33624701	33624702	rs10517287	22041458	Clark SL	2011-11-01	Psychol Med	Pharmacogenomic study of side-effects for antidepressant treatment options in STAR*D.	Response to anti-depressant treatment in major depressive disorder	1,151 European ancestry cases, 288 African American cases	NA	4p15.1	intergenic	rs10517287-T	0.11	2E-7	(Citalopram+Bupropion, Vision/hearing-related side effects)			Affymetrix [421789]	N
841	chr4	33633705	33633706	rs16989060	28394258	Wild PS	2017-04-10	J Clin Invest	Large-scale genome-wide analysis identifies genetic variants associated with cardiac structure and function.	Left atrial antero-posterior diameter	30,201 European ancestry individuals	NA	4p15.1	NR	rs16989060-T	0.9449	7E-6		0.0385	[0.022-0.055] unit decrease	Affymetrix, Illumina [at least 283291] (imputed)	N
841	chr4	33646882	33646883	rs10517289	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	4p15.1	NR	rs10517289-?	NR	3E-9		1.0771335	[1.05-1.1]	Affymetrix, Illumina [12447948] (imputed)	N
841	chr4	33653693	33653694	rs11947397	29748315	Pott J	2018-05-01	Circ Genom Precis Med	Genetic Regulation of PCSK9 (Proprotein Convertase Subtilisin/Kexin Type 9) Plasma Levels and Its Impact on Atherosclerotic Vascular Disease Phenotypes.	Plasma proprotein convertase subtilisin/kexin type 9 levels in stable coronary artery disease	2,022 European ancestry individuals without statin treatment, 1,268 European ancestry individuals with statin treatment	NR	4p15.1	intergenic	rs11947397-G	0.019	7E-7	(statin-free)	0.157	[NR] unit increase	Affymetrix [9882017] (imputed)	N
844	chr4	34013718	34013719	rs35883430	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	4p15.1	NA	rs35883430-T		9E-11		0.0188448	[0.013-0.025] unit decrease	Illumina [13288253] (imputed)	N
844	chr4	34063944	34063945	rs111302082	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,963 Sub-Saharan African ancestry females	NA	4p15.1		rs111302082-C	0.960522	7E-6		0.0297523	[0.017-0.043] unit decrease	Illumina [13900000] (imputed)	N
845	chr4	34154088	34154089	rs6531296	26675016	Cha S	2015-12-16	PLoS One	A Genome-Wide Association Study Uncovers a Genetic Locus Associated with Thoracic-to-Hip Ratio in Koreans.	Thoracic-to-hip circumference ratio	2,388 Korean ancestry males, 2,600 Korean ancestry females	767 Korean ancestry males, 1,485 Korean ancestry females	4p15.1	RPL31P31	rs6531296-?	0.28	1E-6	(males)	0.006182	[0.0037-0.0087] unit increase	Affymetrix [310746]	N
845	chr4	34195503	34195504	rs10034465	28736931	Rotroff DM	2017-07-24	Clin Pharmacol Ther	Genetic Variants in HSD17B3, SMAD3, and IPO11 Impact Circulating Lipids in Response to Fenofibrate in Individuals With Type 2 Diabetes.	Total cholesterol change in response to fenofibrate in statin-treated type 2 diabetes	781 European ancestry individuals, 138 African American ancestry individuals, 345 unknown ancestry individuals		4p15.1	LOC105374394	rs10034465-?	NR	1E-7	(AA)	0.053	unit increase	Affymetrix, Illumina [8129838] (imputed)	N
846	chr4	34303527	34303528	rs2194870	34523824	Lakshman Kumar P	2021-09-15	J Cachexia Sarcopenia Muscle	Genetic variation in genes regulating skeletal muscle regeneration and tissue remodelling associated with weight loss in chronic obstructive pulmonary disease.	Weight loss in chronic obstructive pulmonary disease	401 African American individuals	138 African American individuals	4p15.1		rs2194870-A	NR	2E-6		2.6	[1.7-3.8]	Illumina [7629332] (imputed)	N
846	chr4	34305396	34305397	rs7656700	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,963 Sub-Saharan African ancestry females	NA	4p15.1		rs7656700-C	0.952284	4E-6		0.0279569	[0.016-0.04] unit decrease	Illumina [13900000] (imputed)	N
847	chr4	34394644	34394645	rs17370825	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	4p15.1	C4orf19	rs17370825-?	NR	3E-6	(PC 32:1)	2.1008537	[1.23-2.98] unit increase	Affymetrix [at least 2500000] (imputed)	N
848	chr4	34530623	34530624	rs28649461	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Non-melanoma skin cancer	5,912 European ancestry cases, 181,740 European ancestry controls		4p15.1	NR	rs28649461-C	NR	4E-6		1.15744	[1.08748-1.23189]	Affymetrix [5734850] (imputed)	N
848	chr4	34545345	34545346	rs16989979	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Cerebral amyloid angiopathy	1,673 cases, 1,134 controls	NA	4p15.1	intergenic	rs16989979-T	0.2408	2E-6		0.3325	[0.2-0.47] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
849	chr4	34611458	34611459	rs1903168	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	4p15.1	NR	rs1903168-?	NR	2E-6				Affymetrix [NR]	N
849	chr4	34720225	34720226	rs16990210	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	4p15.1	NR	rs16990210-C	0.1522	2E-8		1.0471205	[1.03-1.06]	Affymetrix, Illumina [NR] (imputed)	N
850	chr4	34860319	34860320	rs115871127	31791832	Koks S	2019-11-12	J Arthroplasty	The Genetic Variations Associated With Time to Aseptic Loosening After Total Joint Arthroplasty.	Time to aseptic loosening in total joint arthroplasty	97 individuals	NA	4p15.1	intergenic	rs115871127-G	NR	1E-6		12.09	[NR] years increase	Illumina [up to 600000]	N
851	chr4	34893854	34893855	rs17390445	19721433	McClay JL	2009-09-01	Mol Psychiatry	Genome-wide pharmacogenomic analysis of response to treatment with antipsychotics.	Response to antipsychotic treatment	494 European ancestry cases, 244 African American and other ancestry cases	NA	4p15.1	intergenic	rs17390445-?	NR	1E-7	(ziprasidone)	17.0	[NR] % variance	Affymetrix, Perlegen [492900]	N
851	chr4	34910474	34910475	rs10034950	26379185	Garcia-Etxebarria K	2015-09-17	PLoS One	No Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity.	Mild influenza (H1N1) infection	107 European ancestry mild cases, 549 European ancestry population controls	NA	4p15.1	ARAP2, PCDH7	rs10034950-?	0.009311	3E-10		9.195	[8.37-10.02]	Affymetrix [547296]	N
851	chr4	34925063	34925064	rs1317830	23517042	Melen E	2013-04-01	Clin Exp Allergy	Genome-wide association study of body mass index in 23 000 individuals with and without asthma.	Body mass index in non-asthmatics	6,025 European ancestry children, 567 children,  6,334 European ancestry adult individuals, 2,050 adult individuals	NA	4p15.1	intergenic	rs1317830-G	0.32	3E-6	(Children)			Illumina [up to 527642]	N
851	chr4	34926957	34926958	rs6852808	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	4p15.1	NR	rs6852808-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
851	chr4	34927606	34927607	rs7700167	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	4p15.1		rs7700167-?	NR	2E-9				NR [~ 8900000] (imputed)	N
852	chr4	35009207	35009208	rs16990641	26379185	Garcia-Etxebarria K	2015-09-17	PLoS One	No Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity.	Mild influenza (H1N1) infection	107 European ancestry mild cases, 549 European ancestry population controls	NA	4p15.1	ARAP2, PCDH7	rs16990641-?	0.0	2E-8				Affymetrix [547296]	N
852	chr4	35032441	35032442	rs959559	29698431	Roosenboom J	2018-04-26	PLoS One	Mapping genetic variants for cranial vault shape in humans.	Cephalic index	4,419 European ancestry individuals	NA	4p15.1	NR	rs959559-G	0.07957	2E-6		0.4672	[0.086-0.848] unit decrease	Illumina [at least 567677] (imputed)	N
852	chr4	35078951	35078952	rs554494388	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	4p15.1	snoU13	rs554494388-A	0.998	8E-6		1.0775	[0.6-1.55] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
853	chr4	35136786	35136787	rs10012974	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	4p15.1	C4orf19	rs10012974-?	NR	4E-6	(phosphoenolpyruvic acid)	0.25395012	[0.15-0.36] unit increase	Affymetrix [at least 2500000] (imputed)	N
853	chr4	35147434	35147435	rs62293713	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	4p15.1	NR	rs62293713-A	0.417	1E-6	(IFNgamma_STAT4_of_Monocytes)			Illumina [5084123] (imputed)	N
853	chr4	35168879	35168880	rs67437545	25130324	Cai DC	2014-08-29	Genes Brain Behav	A genome-wide search for quantitative trait loci affecting the cortical surface area and thickness of Heschl's gyrus.	Heschl's gyrus morphology	1,778 European ancestry individuals, 1,276 individuals	NA	4p15.1	ARAP2	rs67437545-A	0.82	4E-6	(Left HG area)	14.48	unit decrease	Affymetrix, Illumina [4103035] (imputed)	N
854	chr4	35260511	35260512	rs77645453	31430377	Chung J	2019-08-20	Brain	Genome-wide association study of cerebral small vessel disease reveals established and novel loci.	Non-lobar intracerebral hemorrhage (MTAG)	at least 1,005 European ancestry cases, at least 1,711 European ancestry controls	NA	4p15.1	Intergenic	rs77645453-?	NR	5E-6		1.2	[1.11-1.29]	Affymetrix, Illumina [39235000] (imputed)	N
854	chr4	35315490	35315491	rs7689240	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque score in type 2 diabetes	691 African American individuals	205 African American individuals	4p15.1	intergenic	rs7689240-?	NR	1E-6		0.607	[0.32-0.89] unit decrease	Illumina [at least 13000000] (imputed)	N
854	chr4	35358593	35358594	rs10031059	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (genus Peptococcus id.2037)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	4p15.1		rs10031059-T	NR	1E-7		5.288036	z score decrease	Affymetrix, Illumina [NR] (imputed)	N
854	chr4	35372097	35372098	rs437943	18615156	Liu C	2008-07-10	Mol Med	Genome-wide association scan identifies candidate polymorphisms associated with differential response to anti-TNF treatment in rheumatoid arthritis.	Response to TNF antagonist treatment	89 European ancestry cases	NA	4p15.1	CENTD1	rs437943-G	0.33	4E-6				Illumina [283348]	N
855	chr4	35410630	35410631	rs1533317	20031603	Marroni F	2009-08-01	Circ Cardiovasc Genet	A genome-wide association scan of RR and QT interval duration in 3 European genetically isolated populations: the EUROSPAN project.	QT interval	2,325 European ancestry individuals	NA	4p15.1	intergenic	rs1533317-A	0.46	2E-6		0.14	[0.08-0.20] unit increase	Illumina [~ 318327]	N
855	chr4	35418367	35418368	rs317021	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	4p15.1		rs317021-T	0.814	1E-10		0.017	[0.011-0.023] unit decrease	Affymetrix [up to 90000000] (imputed)	N
855	chr4	35420952	35420953	rs111651905	34642315	Ferreiro-Iglesias A	2021-10-12	Nat Commun	Germline determinants of humoral immune response to HPV-16 protect against oropharyngeal cancer.	Human papilloma virus 16 negative oropharyngeal cancer	565 European ancestry cases, 5,256 European ancestry controls	NA	4p15.1		rs111651905-T	NR	1E-6		2.55		Illumina [7574753] (imputed)	N
855	chr4	35431836	35431837	rs317056	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	4p15.1	Intergenic	rs317056-A	0.5204	5E-9	(MTAG)	0.0105	[0.007-0.014] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
855	chr4	35446301	35446302	rs317050	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	4p15.1	Intergenic	rs317050-T	0.5051	2E-12	(MTAG)	0.0116	[0.0085-0.0147] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
855	chr4	35446301	35446302	rs317050	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	4p15.1		rs317050-T	0.5048	3E-8		0.0078	[0.0051-0.0105] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
855	chr4	35446301	35446302	rs317050	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	4p15.1	Intergenic	rs317050-T	0.5048	2E-10	(MTAG)	0.0084	[0.0059-0.0109] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
855	chr4	35476299	35476300	rs1022261	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	4p15.1	ARAP2	rs1022261-A	0.5056	4E-8		0.011013538	[0.0071-0.015] unit decrease	Affymetrix [11514654] (imputed)	N
855	chr4	35483931	35483932	rs10446671	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking initiation	842,717 European ancestry individuals	NA	4p15.1	LOC101928622, ARAP2	rs10446671-T		3E-9		1.021	[NR]	Affymetrix [up to 79000000] (imputed)	N
855	chr4	35501031	35501032	rs7657022	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	4p15.1	NR	rs7657022-G	0.489	6E-16		0.00870001	[0.0066-0.0108] unit increase	NR [9732723] (imputed)	N
855	chr4	35501031	35501032	rs7657022	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	4p15.1	NR	rs7657022-G	0.489	7E-13		0.018290784	[0.013-0.023] unit increase	NR [~ 10000000] (imputed)	N
855	chr4	35511070	35511071	rs12508050	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	4p15.1		rs12508050-A	0.583	8E-12		0.008	[0.006-0.01] unit decrease	NR [NR] (imputed)	N
855	chr4	35514711	35514712	rs55900829	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	4p15.1	NR	rs55900829-T	0.334806	6E-12	(Conditioned on chr4:35501032)	0.019131903	[0.014-0.025] unit increase	NR [~ 10000000] (imputed)	N
856	chr4	35563785	35563786	rs6833641	25628336	Hromatka BS	2015-01-26	Hum Mol Genet	Genetic variants associated with motion sickness point to roles for inner ear development, neurological processes and glucose homeostasis.	Motion sickness	80,494 European ancestry individuals	NA	4p15.1	ARAP2	rs6833641-G	0.852	2E-9		0.046	[0.031-0.062] unit increase	Illumina [7428049] (imputed)	N
856	chr4	35567076	35567077	rs116215256	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin I concentration	1,606 African American individuals	NA	4p15.1		rs116215256-?	NR	3E-6		0.36	[0.21-0.51] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
856	chr4	35568909	35568910	rs11096778	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	4p15.1	Intergenic	rs11096778-T	0.4905	5E-9		0.0133	[0.0088-0.0178] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
857	chr4	35673556	35673557	rs10517350	30595539	Wallace HJ	2018-12-27	Burns	Genetic influence on scar height and pliability after burn injury in individuals of European ancestry: A prospective cohort study.	Postburn scar pliability	665 European ancestry individuals	NA	4p15.1	intergenic	rs10517350-T	0.03083	3E-6		0.724	[0.42-1.03] unit increase	Illumina [298150]	N
857	chr4	35728778	35728779	rs35082390	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	4p15.1	NR	rs35082390-?	NR	4E-8				Illumina [7760689] (imputed)	N
858	chr4	35882677	35882678	rs1368613	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	4p14	C4orf19	rs1368613-?	NR	6E-6	(cyclic adenosine monophosphate)	1.2391025	[0.7-1.77] unit increase	Affymetrix [at least 2500000] (imputed)	N
859	chr4	35931137	35931138	rs1655073	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	4p14	NR	rs1655073-?	NR	2E-6				Affymetrix [NR]	N
859	chr4	35945836	35945837	rs111866232	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	4p14	ARAP2	rs111866232-C	0.0378085272897353	3E-6	(G_Butyrivibrio_HB)	0.734329	[0.43-1.04] unit increase	Illumina [7711310] (imputed)	N
859	chr4	35962453	35962454	rs78754389	34407845	Morra A	2021-08-18	Breast Cancer Res	Association of germline genetic variants with breast cancer-specific survival in patient subgroups defined by clinic-pathological variables related to tumor biology and type of systemic treatment.	5-year breast cancer-specific survival (ER negative treated with chemotherapy)	6,411 European ancestry individuals	NA	4p14		rs78754389-?	NR	2E-8		1.79	[1.46-2.2]	NR [10000000] (imputed)	N
859	chr4	35983110	35983111	rs6834483	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	4p14	CENTD1	rs6834483-G	0.017	6E-7	(Sedentary activity )	0.03	[NR] %awake time increase	Illumina [899892]	N
859	chr4	35983110	35983111	rs6834483	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	4p14	CENTD1	rs6834483-G	0.017	6E-6	(Light activity )	0.03	[NR] %awake time increase	Illumina [899892]	N
859	chr4	35983110	35983111	rs6834483	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	4p14	CENTD1	rs6834483-G	0.017	3E-6	(Sedentary activity )	0.03	[NR] min/d increase	Illumina [899892]	N
859	chr4	35996709	35996710	rs34766496	31958309	Hsieh AR	2020-01-01	BMJ Open Diabetes Res Care	Lack of association of genetic variants for diabetic retinopathy in Taiwanese patients with diabetic nephropathy.	Diabetic retinopathy in type 2 diabetes	206 East Asian ancestry cases, 206 East Asian ancestry controls	NA	4p14	LOC101928667	rs34766496-A	NR	4E-6		2.3	[1.61-3.29]	Affymetrix, Illumina [NR] (imputed)	N
859	chr4	36006904	36006905	rs1397427	26379185	Garcia-Etxebarria K	2015-09-17	PLoS One	No Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity.	Mild influenza (H1N1) infection	107 European ancestry mild cases, 549 European ancestry population controls	NA	4p14	ARAP2, PCDH7	rs1397427-?	0.06052	1E-9		3.77	[3.32-4.22]	Affymetrix [547296]	N
859	chr4	36006904	36006905	rs1397427	26379185	Garcia-Etxebarria K	2015-09-17	PLoS One	No Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity.	Influenza A (H1N1) infection	49 European ancestry severe cases, 107 European ancestry mild cases, 549 European ancestry population controls	NA	4p14	ARAP2, PCDH7	rs1397427-?	0.06052	5E-9		3.222	[2.138-4.856]	Affymetrix [547296]	N
859	chr4	36026746	36026747	rs1567482	23648065	Low SK	2013-05-04	Cancer Sci	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (5-fluorouracil)	177 Japanese ancestry cases, 952 Japanese ancestry controls	NA	4p14	LOC651644	rs1567482-G	0.875	6E-6	(Allelic model)	2.846	[1.716-4.719]	Illumina [733202]	N
860	chr4	36068570	36068571	rs12645801	27694959	Bonder MJ	2016-10-03	Nat Genet	The effect of host genetics on the gut microbiome.	Gut microbiota (functional units)	984 European ancestry individuals	530 European ancestry individuals	4p14	ARAP2	rs12645801-T	NR	1E-8	(PWY-6518_glycocholate_metabolism_(bacteria))	5.735547	NR Z-score decrease	Illumina [8100000] (imputed)	N
860	chr4	36077603	36077604	rs73123462	31589552	Lind L	2019-10-07	Metab Syndr Relat Disord	Genome-Wide Association Study of the Metabolic Syndrome in UK Biobank.	Metabolic syndrome	291,107 European ancestry individuals	NA	4p14	ARAP2	rs73123462-T	0.0155967	5E-9		0.149549	[0.1-0.2] unit increase	Affymetrix [9463307] (imputed)	N
860	chr4	36079593	36079594	rs12651329	22959728	Ahmeti KB	2012-09-05	Neurobiol Aging	Age of onset of amyotrophic lateral sclerosis is modulated by a locus on 1p34.1.	Amyotrophic lateral sclerosis (age of onset)	4,243 European ancestry cases	NA	4p14	ARAP2	rs12651329-C	0.39	5E-7	(Joint)			Illumina [254145]	N
860	chr4	36091369	36091370	rs1878825	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	NA	4p14	ARAP2	rs1878825-C	0.6424	5E-9		0.1072	[0.071-0.143] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
860	chr4	36094130	36094131	rs11096798	34162658	Quinn MC	2021-06-23	Cancer Epidemiol Biomarkers Prev	Identification of a locus near ULK1 associated with progression-free survival in ovarian cancer.	Progression free survival in epithelial ovarian cancer treated with carboplatin and paclitaxel	2,352 European ancestry individuals	NA	4p14	NR	rs11096798-T		9E-6		0.5053	[0.28-0.73] unit decrease	Illumina [12764477] (imputed)	N
860	chr4	36121140	36121140	rs143366422	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	4p14		rs143366422-GT	NR	4E-11		0.0155	[0.011-0.02] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
861	chr4	36189156	36189157	rs116105213	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Hippocampal volume in Alzheimer's disease dementia	190 European ancestry Alzheimer's disease dementia cases	NA	4p14	ARAP2, SEC63P2, DTHD1	rs116105213-C	0.02	4E-7		2.73	[1.73-3.73] unit increase	Illumina [8437147] (imputed)	N
861	chr4	36241002	36241002	rs139805484	30787463	Escala-Garcia M	2019-02-21	Br J Cancer	Genome-wide association study of germline variants and breast cancer-specific mortality.	Breast cancer specific mortality in estrogen receptor negative breast cancer	2,125 European ancestry cases, 14,047 European ancestry controls	NA	4p14	NR	rs139805484-?	NR	2E-6		1.8205888	[1.42-2.34]	Affymetrix, Illumina [~ 10400000] (imputed)	N
861	chr4	36250335	36250336	rs10011319	32339537	Roberts V	2020-04-24	J Invest Dermatol	Genome wide association study identifies genetic associations with perceived age.	Youthful appearance (self-reported)	423,992 European ancestry individuals	NA	4p14	ARAP2	rs10011319-G	0.609305	5E-11		1.0296291	NR	Affymetrix [~ 9600000] (imputed)	N
861	chr4	36271839	36271840	rs115503647	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	4p14		rs115503647-?	NR	9E-15				NR [~ 8900000] (imputed)	N
862	chr4	36312541	36312542	rs28530750	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	4p14		rs28530750-A	NR	3E-18		0.0503	[0.039-0.062] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
862	chr4	36312541	36312542	rs28530750	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	4p14		rs28530750-A	NR	1E-19		0.053	[0.042-0.064] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
862	chr4	36312541	36312542	rs28530750	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	4p14		rs28530750-G	0.957	1E-12				Affymetrix [10369434] (imputed)	N
862	chr4	36312541	36312542	rs28530750	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	4p14	DTHD1	rs28530750-A	0.043417	5E-26		0.058097087	[0.047-0.069] unit increase	Affymetrix [93095623] (imputed)	N
862	chr4	36312541	36312542	rs28530750	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	4p14	DTHD1	rs28530750-A	0.043397	2E-11		0.037150707	[0.026-0.048] unit increase	Affymetrix [93095623] (imputed)	N
862	chr4	36312541	36312542	rs28530750	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	4p14	DTHD1	rs28530750-A	0.0433940000000001	8E-28		0.060296968	[0.049-0.071] unit increase	Affymetrix [93095623] (imputed)	N
862	chr4	36312541	36312542	rs28530750	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	4p14	DTHD1	rs28530750-A	0.043404	2E-11		0.036883086	[0.026-0.048] unit decrease	Affymetrix [93095623] (imputed)	N
862	chr4	36312541	36312542	rs28530750	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	4p14	DTHD1	rs28530750-A	0.043368	5E-9		0.032468397	[0.022-0.043] unit decrease	Affymetrix [93095623] (imputed)	N
862	chr4	36312541	36312542	rs28530750	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4p14	NR	rs28530750-A	0.0402385	2E-33				Affymetrix, Illumina [24649327] (imputed)	N
862	chr4	36312541	36312542	rs28530750	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	4p14	NR	rs28530750-A	0.043032	2E-33		0.055643	[0.047-0.065] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
862	chr4	36312541	36312542	rs28530750	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4p14	NR	rs28530750-A	0.0434783	2E-32				Affymetrix, Illumina [23114412] (imputed)	N
862	chr4	36312541	36312542	rs28530750	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	4p14	NR	rs28530750-A	0.043105	2E-31		0.05608	[0.047-0.066] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
862	chr4	36312541	36312542	rs28530750	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	4p14	NR	rs28530750-A	0.043071	4E-21		0.044348	[0.035-0.054] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
862	chr4	36312541	36312542	rs28530750	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	4p14		rs28530750-?	NR	4E-27				NR [~ 8900000] (imputed)	N
862	chr4	36315733	36315740	rs150359153	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	4p14	DTHD1, RP11-431M7.2	rs150359153-C	0.036953	3E-15		0.046856113	[0.035-0.058] unit increase	Affymetrix [93095623] (imputed)	N
862	chr4	36330369	36330370	rs73806803	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	4p14		rs73806803-G	NR	1E-9		0.0371	[0.025-0.049] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
862	chr4	36340271	36340272	rs6825234	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4p14	NR	rs6825234-C	0.0377076	2E-23				Affymetrix, Illumina [23467995] (imputed)	N
862	chr4	36342591	36342592	rs7668087	30045251	Lee MR	2018-07-01	Medicine (Baltimore)	Causal association of body mass index with hypertension using a Mendelian randomization design.	Body mass index	8,832 Korean ancestry individuals	NA	4p14	DTHD1	rs7668087-?	NR	4E-6		0.4	[0.23-0.57] unit increase	Affymetrix [1590162] (imputed)	N
863	chr4	36441973	36441974	rs80127210	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	4p14	NR	rs80127210-?	NR	3E-6	(Native Hawaiian)	0.94	[NR] unit increase	Illumina [up to 11892802] (imputed)	N
863	chr4	36540582	36540583	rs7685548	31830031	Chernus JM	2019-12-12	PLoS Genet	A candidate gene analysis and GWAS for genes associated with maternal nondisjunction of chromosome 21.	Maternal nondisjunction of chromosome 21 (MI error vs MII error)	535 mothers (meiosis I error), 157 mothers (meiosis II error)	NA	4p14	NR	rs7685548-?		5E-6		2.31	[NR]	Illumina [NR] (imputed)	N
864	chr4	36592238	36592239	rs77198337	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	4p14	NR	rs77198337-T	0.0128	4E-6	(EA)	0.1641	[0.095-0.234] unit decrease	Illumina [~ 11800000] (imputed)	N
864	chr4	36691694	36691695	rs61798586	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	4p14		rs61798586-A	0.1444	2E-8		0.0112	[0.0073-0.0151] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
865	chr4	36732289	36732290	rs41350847	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs non-severe)	86 Finnish ancestry male severe erosion cases, 50 Finnish ancestry female severe erosion cases, 817 Finnish ancestry male non-severe erosion controls, 991 Finnish ancestry female non-severe erosion controls	NA	4p14	NR	rs41350847-?	NR	4E-6				Illumina [NR] (imputed)	N
865	chr4	36750014	36750015	rs774400575	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	4p14	NR	rs774400575-?	NR	5E-6		4.56	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
865	chr4	36813104	36813105	rs16992647	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	4p14	NR	rs16992647-C	NR	2E-6		0.016	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
865	chr4	36813104	36813105	rs16992647	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	4p14	MIR4801, DTHD1	rs16992647-T	0.174434578257976	2E-8		0.02042858	unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
866	chr4	36831380	36831381	rs985746	27397699	Pei YF	2016-07-07	Bone	Genome-wide association meta-analyses identified 1q43 and 2q32.2 for hip Ward's triangle areal bone mineral density.	Bone mineral density (Ward's triangle area)	4,305 European ancestry individuals,1,579 Chinese Han ancestry individuals, 845 African-American individuals, 446 Hispanic individuals		4p14	KIAA1239	rs985746-C	NR	3E-6		0.12	[NR] unit increase	Affymetrix, Illumina [at least 9551331] (imputed)	N
866	chr4	36897135	36897136	rs66837203	30361487	Yan Q	2018-10-25	Mol Psychiatry	Genome-wide association study of brain amyloid deposition as measured by Pittsburgh Compound-B (PiB)-PET imaging.	Cerebral amyloid deposition (PET imaging)	983 European ancestry individuals	NR	4p14	DTHD1, MIR4801	rs66837203-T	0.08	6E-6		0.11	[NR] unit increase	Illumina [at least 7000000] (imputed)	N
866	chr4	36930452	36930453	rs1459676	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4p14	NR	rs1459676-C	0.0122	1E-11	(FASN)	8.337	NR unit increase	Illumina [1671387] (imputed)	N
867	chr4	36994637	36994638	rs11096855	27595289	Goyal RK	2016-09-05	Bone Marrow Transplant	Novel HLA-DP region susceptibility loci associated with severe acute GvHD.	Acute graft versus host disease in bone marrow transplantation (recipient effect)	291 European ancestry recipients with acute graft versus host disease, 288 European ancestry recipients without acute graft versus host disease	NA	4p14	Intergenic	rs11096855-?		2E-7				Affymetrix [905761]	N
867	chr4	37064330	37064331	rs13117816	20802204	Baranzini SE	2010-09-01	Brain	Genetic variation influences glutamate concentrations in brains of patients with multiple sclerosis.	Multiple sclerosis--Brain Glutamate Levels	382 cases	NA	4p14	FLJ11017	rs13117816-?	NR	7E-6				Illumina [~ 500000]	N
867	chr4	37065986	37065987	rs12507593	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Inferior temporal gyrus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	4p14	NR	rs12507593-?		8E-6				Illumina [4322238] (imputed)	N
868	chr4	37127461	37127462	rs144242331	34340725	Campos AI	2021-08-03	Twin Res Hum Genet	Genetic Susceptibility to Pneumonia: A GWAS Meta-Analysis Between the UK Biobank and FinnGen.	Pneumonia	24,760 European ancestry cases, 525,615 European ancestry controls	NA	4p14		rs144242331-A	NR	2E-7		0.036	[0.022-0.05] unit increase	NR [7831927]	N
868	chr4	37151532	37151533	rs2098918	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	4p14	KIAA1239	rs2098918-C	0.544869	6E-10		0.0118408	[0.0081-0.0156] unit decrease	Affymetrix [NR] (imputed)	N
868	chr4	37154102	37154103	rs79102465	33407418	Jonsson A	2021-01-06	BMC Med Genomics	Genome-wide association study of circulating levels of glucagon during an oral glucose tolerance test.	Glucagon levels in response to oral glucose tolerance test (120 minutes)	553 European ancestry individuals, 1,346 individuals	NA	4p14	NR	rs79102465-A	0.0351	8E-6		0.416	[0.23-0.6] unit increase	Illumina [NR] (imputed)	N
868	chr4	37167129	37167130	rs7685280	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	4p14	NR	rs7685280-A	0.265	9E-6	(IFNalpha_CXCL10_of_CD4p_T)			Illumina [5084123] (imputed)	N
868	chr4	37182645	37182646	rs7678296	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	4p14	NR	rs7678296-?	NR	7E-6	(AA)	0.4535	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
869	chr4	37238270	37238271	rs12642615	30369944	Balakrishnan P	2018-10-12	Front Genet	Genetic Variants Related to Cardiometabolic Traits Are Associated to B Cell Function, Insulin Resistance, and Diabetes Among AmeriCan Indians: The Strong Heart Family Study.	HOMA-B (corrected for HOMA-IR)	1,892 American Indian ancestry individuals	NA	4p14	FLJ16686, KIAA1239	rs12642615-?	0.38	2E-7		16.88	unit increase	Illumina [120975] (imputed)	N
869	chr4	37253249	37253250	rs17603438	32699080	Brhane Y	2020-07-22	Cancer Epidemiol Biomarkers Prev	Genetic determinants of lung cancer prognosis in never smokers: A pooled analysis in the International Lung Cancer Consortium.	Lung adenocarcinoma (survival time) in never smokers	1,065 European ancestry individuals	871 Japanese ancestry individuals	4p14	NWD2, KIAA1239	rs17603438-A	NR	7E-7	(EA)	0.5	[0.38-0.66]	Illumina [629283] (imputed)	N
869	chr4	37273894	37273895	rs1614860	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	4p14	NR	rs1614860-?	NR	2E-6				Affymetrix [NR]	N
869	chr4	37279459	37279460	rs116838950	33841421	Li J	2021-03-25	Front Immunol	Variants at the MHC Region Associate With Susceptibility to <i>Clostridioides difficile</i> Infection: A Genome-Wide Association Study Using Comprehensive Electronic Health Records.	Clostridioides difficle infection in antibiotics-users	587 European ancestry cases, 3,166 European ancestry controls	NA	4p14	KIAA1239	rs116838950-C	0.013	5E-6		2.65	[1.84-3.66]	Illumina [64973696] (imputed)	N
869	chr4	37279459	37279460	rs116838950	33841421	Li J	2021-03-25	Front Immunol	Variants at the MHC Region Associate With Susceptibility to <i>Clostridioides difficile</i> Infection: A Genome-Wide Association Study Using Comprehensive Electronic Health Records.	Clostridioides difficle infection	1,160 European ancestry cases, 14,144 European ancestry controls	NA	4p14	NWD2	rs116838950-C	0.0116	4E-6		2.0	[1.54-2.44]	Illumina [64973696] (imputed)	N
869	chr4	37294589	37294590	rs7691308	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris color (L* coordinate)	329 South Asian ancestry individuals		4p14	KIAA1239	rs7691308-T	0.308975	5E-6		0.392144	[0.23-0.56] unit decrease	Illumina [640625] (imputed)	N
869	chr4	37352796	37352797	rs6531527	31263063	Dufek S	2019-07-01	J Am Soc Nephrol	Genetic Identification of Two Novel Loci Associated with Steroid-Sensitive Nephrotic Syndrome.	Childhood steroid-sensitive nephrotic syndrome	422 European ancestry cases, 5,642 European ancestry controls	NA	4p14	NR	rs6531527-G	0.38	7E-6		1.38	[1.20-1.58]	Illumina [5216266] (imputed)	N
870	chr4	37406476	37406477	rs28473232	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	4p14	NR	rs28473232-G	0.23199800000000004	3E-9		0.00550183	[0.0036-0.0075] unit increase	Affymetrix [16582909] (imputed)	N
870	chr4	37406476	37406477	rs28473232	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	4p14	NR	rs28473232-G	0.23199800000000004	6E-7		0.00506798	[0.0029-0.0072] unit increase	Affymetrix [16582965] (imputed)	N
870	chr4	37429096	37429097	rs77617068	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	4p14		rs77617068-C	NR	8E-11		0.0255	[0.018-0.033] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
870	chr4	37429096	37429097	rs77617068	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	4p14	NWD2	rs77617068-T	0.903228	1E-16		0.00316432	[0.0024-0.0039] unit decrease	Affymetrix [13995440] (imputed)	N
870	chr4	37436196	37436197	rs111730139	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	4p14	NR	rs111730139-T	NR	5E-10		0.0256	[0.018-0.034] unit increase	Affymetrix [9000000] (imputed)	N
870	chr4	37470752	37470753	rs11730662	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Nevus count or cutaneous melanoma	36,760 European ancestry cutaneous melanoma cases, 375,188 European ancestry controls, 12,930 European ancestry individuals, 52,847 individuals	NA	4p14	C4orf19	rs11730662-C	0.702926	1E-8				Affymetrix, Illumina [NR] (imputed)	N
871	chr4	37486932	37486933	rs6826964	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	4p14	NR	rs6826964-?	NR	7E-137				Affymetrix [NR]	N
871	chr4	37489081	37489082	rs2928314	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	4p14		rs2928314-A	NR	9E-9		0.0109	[0.0072-0.0146] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
871	chr4	37514319	37514320	rs62298204	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	4p14	NR	rs62298204-T	NR	1E-9		0.0188	[0.013-0.025] unit increase	Affymetrix [9000000] (imputed)	N
871	chr4	37526843	37526844	rs2939710	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Perceived intensity of neohesperidin dihydrochalcone	1,757 European ancestry twins	NA	4p14	C4orf19	rs2939710-C	0.44	6E-6		0.16	[0.082-0.238] unit increase	Illumina [4381914] (imputed)	N
871	chr4	37599752	37599753	rs2939731	29036319	Qi H	2017-09-26	Hum Mol Genet	Discovery of susceptibility loci associated with tuberculosis in Han Chinese.	Tuberculosis	972 Chinese ancestry cases, 1,316 Gambian ancestry cases, 1,537 Chinese ancestry controls, 1,382 Gambian ancestry controls	NA	4p14	NR	rs2939731-?	NR	6E-6				Illumina [7333833] (imputed)	N
871	chr4	37600598	37600599	rs2940989	29036319	Qi H	2017-09-26	Hum Mol Genet	Discovery of susceptibility loci associated with tuberculosis in Han Chinese.	Tuberculosis	972 Chinese ancestry cases, 1,316 Gambian ancestry cases, 1,537 Chinese ancestry controls, 1,382 Gambian ancestry controls	NA	4p14	NR	rs2940989-?	NR	2E-6				Illumina [7333833] (imputed)	N
871	chr4	37601751	37601752	rs2940991	29036319	Qi H	2017-09-26	Hum Mol Genet	Discovery of susceptibility loci associated with tuberculosis in Han Chinese.	Tuberculosis	972 Chinese ancestry cases, 1,316 Gambian ancestry cases, 1,537 Chinese ancestry controls, 1,382 Gambian ancestry controls	NA	4p14	NR	rs2940991-?	NR	3E-6				Illumina [7333833] (imputed)	N
871	chr4	37613929	37613930	rs17495047	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	4p14	NR	rs17495047-?	NR	3E-7				Affymetrix [NR]	N
872	chr4	37633672	37633673	rs111283315	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	4p14	NR	rs111283315-?	NR	2E-6		4.768	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
872	chr4	37645388	37645389	rs4832928	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	4p14	NR	rs4832928-C	0.701397954120267	2E-6	(IGP49)	0.1627	[0.096-0.229] unit increase	Illumina [~ 2500000] (imputed)	N
872	chr4	37647233	37647234	rs13144232	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	4p14	NR	rs13144232-G	0.63805114610245	6E-7	(IGP9)	0.1638	[0.1-0.228] unit increase	Illumina [~ 2500000] (imputed)	N
872	chr4	37651154	37651155	rs2292298	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	4p14	NR	rs2292298-G	0.360936488423865	4E-6	(IGP68)	0.1504	[0.086-0.215] unit decrease	Illumina [~ 2500000] (imputed)	N
872	chr4	37662531	37662532	rs6531565	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	4p14	NR	rs6531565-?	NR	6E-7	(Native Hawaiian)	0.5136	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
872	chr4	37699845	37699846	rs78410324	30498476	Liu H	2018-11-15	Front Endocrinol (Lausanne)	Heritability and Genome-Wide Association Study of Plasma Cholesterol in Chinese Adult Twins.	Total cholesterol levels	139 Chinese ancestry dizygotic twin pairs	NA	4p14	LOC105374404	rs78410324-?		6E-6				Illumina [7405822] (imputed)	N
872	chr4	37737988	37737989	rs16993852	26569114	Brown EL	2015-11-16	PLoS One	Genome-Wide Association Study of Staphylococcus aureus Carriage in a Community-Based Sample of Mexican-Americans in Starr County, Texas.	Staphylococcus aureus nasal carriage (intermittent)	97 Mexican American intermittent carrier individuals, 620 Mexican American non-carrier individuals	NA	4p14	RELL1	rs16993852-T	0.04	3E-7		6.93	[3.31-14.52]	Affymetrix, Illumina [at least 603042] (imputed)	N
873	chr4	37759952	37759953	rs16988320	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	4p14	PGM2	rs16988320-T	0.0121952070957461	3E-6	(G_unclassified_F_Porphyromonadaceae_RNT)	0.643828	[0.37-0.91] unit decrease	Illumina [7711310] (imputed)	N
873	chr4	37777814	37777815	rs2113957	34387878	Kim KY	2021-08-13	Hepatology	Genome-wide association of individual vulnerability with alcoholic liver disease: A Korean Genome and Epidemiology Study.	Alcohol-associated liver disease in heavy drinkers	1,185 Korean ancestry cases, 2,246 Korean ancestry controls	NA	4p14		rs2113957-?	NR	1E-5		1.312	[1.163-1.479]	Affymetrix [7975321] (imputed)	N
873	chr4	37808741	37808742	rs13434655	34387878	Kim KY	2021-08-13	Hepatology	Genome-wide association of individual vulnerability with alcoholic liver disease: A Korean Genome and Epidemiology Study.	Alcohol-associated liver disease in light drinkers	1,379 Korean ancestry cases, 13,132 Korean ancestry controls	NA	4p14		rs13434655-?	NR	5E-6		0.71	[0.6133-0.8219]	Affymetrix [7975321] (imputed)	N
873	chr4	37820678	37820679	rs2911914	34380480	Liu J	2021-08-12	BMC Med	Genome-wide association study followed by trans-ancestry meta-analysis identify 17 new risk loci for schizophrenia.	Schizophrenia	26,271 East Asian ancestry cases, 40,071 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	4p14		rs2911914-T	NR	2E-8		0.95		Illumina [NR] (imputed)	N
873	chr4	37820678	37820679	rs2911914	34380480	Liu J	2021-08-12	BMC Med	Genome-wide association study followed by trans-ancestry meta-analysis identify 17 new risk loci for schizophrenia.	Schizophrenia	26,271 East Asian ancestry cases, 40,071 East Asian ancestry controls	NA	4p14		rs2911914-T	NR	7E-7		0.93		Illumina [NR] (imputed)	N
874	chr4	37908349	37908350	rs115965110	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	4p14	NR	rs115965110-?	NR	3E-6		0.069001	[0.04-0.098] unit increase	Affymetrix [805426] (imputed)	N
874	chr4	37915461	37915462	rs11096913	22959728	Ahmeti KB	2012-09-05	Neurobiol Aging	Age of onset of amyotrophic lateral sclerosis is modulated by a locus on 1p34.1.	Amyotrophic lateral sclerosis in C9orf72 mutation negative individuals	Up to 4,243 European ancestry cases, up to 5,112 European ancestry controls	NA	4p14	TBC1D1	rs11096913-?	NR	3E-6		1.41	[1.22-1.64]	Illumina [254145]	N
874	chr4	37925977	37925978	rs16994074	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (unclassified genus belonging to family Lachnospiraceae)	1,068 Japanese ancestry individuals	NA	4p14	TBC1D1	rs16994074-C	0.03	5E-6	(male)	0.166	[0.095-0.237] unit decrease	Illumina [6380737] (imputed)	N
874	chr4	37927386	37927387	rs9968554	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	4p14		rs9968554-?	NR	5E-10				NR [~ 8900000] (imputed)	N
874	chr4	37938517	37938518	rs10010758	22699663	Divaris K	2012-07-01	J Dent Res	Genome-wide association study of periodontal pathogen colonization.	Periodontal microbiota	1,020 European ancestry individuals	NA	4p14	TBC1D1, PTTG2	rs10010758-C	0.291	4E-6	(Red)	1.91	[1.45-2.51]	Affymetrix [~ 2500000] (imputed)	N
874	chr4	37946355	37946356	rs7700134	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	4p14	TBC1D1	rs7700134-T	0.0084	8E-6		0.4751	[0.27-0.68] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
874	chr4	37957805	37957806	rs73236850	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Small vessel stroke	333 Indian ancestry cases, 2,154 Indian ancestry controls	NA	4p14		rs73236850-?	NR	5E-6		1.0727648	[1.04079975945536-1.10571157656211]	Illumina [7827597] (imputed)	N
874	chr4	37977187	37977188	rs4352485	29160301	Fabbri C	2017-11-21	Pharmacogenomics J	New insights into the pharmacogenomics of antidepressant response from the GENDEP and STAR*D studies: rare variant analysis and high-density imputation.	Response to antidepressants (symptom remission)	2,145 European ancestry individuals	NA	4p14	PTTG2, TBC1D1	rs4352485-?	NR	3E-6		1.8042	NR	Affymetrix, Illumina [7062950] (imputed)	N
874	chr4	37977187	37977188	rs4352485	29160301	Fabbri C	2017-11-21	Pharmacogenomics J	New insights into the pharmacogenomics of antidepressant response from the GENDEP and STAR*D studies: rare variant analysis and high-density imputation.	Response to SSRI (symptom remission)	1,828 European ancestry individuals	NA	4p14	PTTG2, TBC1D1	rs4352485-?	NR	2E-6		1.9615	NR	Affymetrix, Illumina [7062950] (imputed)	N
875	chr4	38013025	38013026	rs13132184	25648963	Debette S	2014-11-25	Biol Psychiatry	Genome-wide studies of verbal declarative memory in nondemented older people: the Cohorts for Heart and Aging Research in Genomic Epidemiology consortium.	Verbal declarative memory	Up to 27,337 European ancestry individuals, up to 472 Korkulan individuals, up to 1,267 Erasmus Rucphen Family individuals	Up to 10,617 European ancestry individuals, up to 3,811 African American individuals	4p14	TBC1D1	rs13132184-A	0.83	4E-6	(VPWL-dr, EA)			Affymetrix, Illumina [NR] (imputed)	N
875	chr4	38019301	38019302	rs7671645	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	334,468 European ancestry, NR ancestry individuals	NA	4p14		rs7671645-?	NR	5E-8				Affymetrix [NR] (imputed)	N
875	chr4	38060484	38060485	rs1863329	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	4p14	TBC1D1	rs1863329-C	0.346397	3E-10		0.014785351	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
875	chr4	38062232	38062233	rs1364953	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	4p14	PTTG2	rs1364953-?	NR	3E-7	(TAG 54:5)	0.20298019	[0.13-0.28] unit increase	Affymetrix [at least 2500000] (imputed)	N
875	chr4	38105160	38105161	rs933822	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	4p14	TBC1D1	rs933822-G	0.694529	2E-16		0.019861035	[0.015-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
875	chr4	38109846	38109847	rs1344603	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	4p14	TBC1D1	rs1344603-C	0.674764	1E-24		0.024251983	[0.02-0.029] unit increase	Affymetrix [93095623] (imputed)	N
875	chr4	38114411	38114412	rs644418	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 21, depth of nasal alae)	2,187 European ancestry individuals	NA	4p14	NR	rs644418-G	0.4115	2E-7		0.1606	[0.1-0.22] unit increase	Illumina [10677593] (imputed)	N
875	chr4	38121362	38121363	rs630428	34337005	Duan H	2021-07-17	Biomed Res Int	A Genome-Wide Association Study of Age-Related Hearing Impairment in Middle- and Old-Aged Chinese Twins.	Hearing function (2 kHz)	131 Chinese ancestry dizygotic twin pairs	NA	4p14		rs630428-?	NR	2E-6				Illumina [1365315]	N
875	chr4	38125810	38125811	rs636487	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	4p14	TBC1D1	rs636487-C	0.3403	5E-9		0.02203569	[0.015-0.029] unit increase	Affymetrix [~ 2500000] (imputed)	N
875	chr4	38131254	38131255	rs605073	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	4p14		rs605073-A	0.642	2E-18				Affymetrix [10369434] (imputed)	N
875	chr4	38132998	38132999	rs633059	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	4p14		rs633059-A	0.669	8E-20				Affymetrix [10369434] (imputed)	N
875	chr4	38132998	38132999	rs633059	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	4p14	TBC1D1	rs633059-G	0.33086	6E-9		0.013711299	[0.0091-0.0183] unit decrease	Affymetrix [93095623] (imputed)	N
875	chr4	38132998	38132999	rs633059	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	4p14	TBC1D1	rs633059-G	0.333	3E-11		0.02517467	[0.018-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
875	chr4	38137352	38137353	rs658349	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	4p14	TBC1D1	rs658349-G	0.330653	5E-44		0.03292322	[0.028-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
875	chr4	38137352	38137353	rs658349	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	4p14		rs658349-?	NR	7E-10				NR [~ 8900000] (imputed)	N
875	chr4	38137352	38137353	rs658349	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	4p14	TBC1D1	rs658349-G	0.3322	2E-15		0.03035849	[0.023-0.038] unit decrease	Affymetrix [~ 2500000] (imputed)	N
876	chr4	38151610	38151611	rs620470	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	4p14	NR	rs620470-T	0.0	2E-7		3.23	[2.78-3.68]	Illumina [8468885] (imputed)	N
876	chr4	38161063	38161064	rs115426111	24159190	Seppala I	2013-10-24	Eur Heart J	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Symmetrical dimethylarginine levels	5110 European ancestry individuals	NA	4p14	NR	rs115426111-T	0.998	1E-6		1.519	[0.91-2.13] unit decrease	Affymetrix, Illumina [10085758] (imputed)	N
876	chr4	38161063	38161064	rs115426111	24159190	Seppala I	2013-10-24	Eur Heart J	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Serum dimethylarginine levels (asymmetric/symetric ratio)	5110 European ancestry individuals	NA	4p14	NR	rs115426111-T	0.998	7E-6		1.402	[0.79-2.01] unit increase	Affymetrix, Illumina [10085758] (imputed)	N
876	chr4	38207738	38207739	rs28361325	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	4p14	NR	rs28361325-C	0.62029	4E-8		0.0116279	[0.0075-0.0158] unit increase	NR [NR]	N
876	chr4	38209381	38209382	rs7670226	33321125	Nasu T	2020-12-13	Int J Cardiol	A genome-wide association study for highly sensitive cardiac troponin T levels identified a novel genetic variation near a RBAK-ZNF890P locus in the Japanese general population.	High-sensitivity cardiac troponin T levels	3,783 Japanese ancestry individuals	898 Japanese ancestry individuals	4p14	TBC1D1	rs7670226-T	0.829	2E-6		0.026	[0.014-0.038] unit increase	Illumina [7151284] (imputed)	N
876	chr4	38211433	38211434	rs4389587	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	4p14		rs4389587-A	NR	2E-8		0.0144	[0.0093-0.0195] unit decrease	Affymetrix, Illumina [20529698] (imputed)	N
876	chr4	38235983	38235984	rs78829380	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	4p14	NR	rs78829380-?	NR	7E-6		7.342	NR unit increase	Affymetrix [at least 600000] (imputed)	N
877	chr4	38293729	38293730	rs13139671	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	334,468 European ancestry, NR ancestry individuals	NA	4p14		rs13139671-?	NR	5E-8				Affymetrix [NR] (imputed)	N
877	chr4	38299698	38299699	rs55902340	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	334,944 European ancestry, NR ancestry individuals	NA	4p14		rs55902340-?	NR	5E-8				Affymetrix [NR] (imputed)	N
877	chr4	38299698	38299699	rs55902340	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	334,468 European ancestry, NR ancestry individuals	NA	4p14		rs55902340-?	NR	5E-8				Affymetrix [NR] (imputed)	N
877	chr4	38314169	38314170	rs1586459	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	4p14	intergenic	rs1586459-G	0.8041	1E-46		0.06502299	[0.056-0.074] unit increase	Affymetrix [~ 2500000] (imputed)	N
877	chr4	38316529	38316530	rs34670304	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very small VLDL	115,082 European ancestry individuals	NA	4p14		rs34670304-G	0.446736	5E-8		0.0224321	[0.014-0.03] unit decrease	NR [11722792] (imputed)	N
877	chr4	38316529	38316530	rs34670304	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very small VLDL	115,082 European ancestry individuals	NA	4p14		rs34670304-G	0.446736	3E-8		0.0227866	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
877	chr4	38316529	38316530	rs34670304	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	4p14		rs34670304-G	0.447	2E-35				Affymetrix [10369434] (imputed)	N
877	chr4	38316529	38316530	rs34670304	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	4p14		rs34670304-G	0.447	7E-23				Affymetrix [10369434] (imputed)	N
877	chr4	38316529	38316530	rs34670304	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	4p14		rs34670304-G	0.447	3E-27				Affymetrix [10369434] (imputed)	N
877	chr4	38318353	38318354	rs4833034	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	4p14		rs4833034-?	NR	5E-8				Affymetrix [NR] (imputed)	N
877	chr4	38318353	38318354	rs4833034	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	4p14		rs4833034-C	0.341	9E-17				Affymetrix [10369434] (imputed)	N
877	chr4	38321193	38321194	rs4832763	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	4p14		rs4832763-G	0.80311	3E-24		0.034955986	[0.028-0.042] unit increase	Affymetrix [93095623] (imputed)	N
877	chr4	38321681	38321682	rs7677938	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	4p14		rs7677938-C	0.809404	2E-16		0.028411867	[0.022-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
877	chr4	38324006	38324007	rs10433875	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	4p14		rs10433875-T	0.784321	1E-25		0.034114998	[0.028-0.04] unit increase	Affymetrix [93095623] (imputed)	N
877	chr4	38325035	38325036	rs6856616	27569725	Yang SK	2016-08-25	Gastroenterology	Identification of Loci at 1q21 and 16q23 That Affect Susceptibility to Inflammatory Bowel Disease in Koreans.	Inflammatory bowel disease	1,505 Korean ancestry cases, 4,041 Korean ancestry controls	1,989 Korean ancestry cases, 3,491 Korean ancestry controls	4p14	intergenic	rs6856616-G	0.23	5E-10				Illumina [522285]	N
877	chr4	38325035	38325036	rs6856616	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	4p14	NR	rs6856616-G	0.06662	1E-6	(EA)	1.0979221	[1.06-1.14]	Affymetrix, Illumina [~ 9000000] (imputed)	N
877	chr4	38325035	38325036	rs6856616	23850713	Yang SK	2013-07-14	Gut	Genome-wide association study of Crohn's disease in Koreans revealed three new susceptibility loci and common attributes of genetic susceptibility across ethnic populations.	Crohn's disease	532 Korean ancestry cases, 733 Korean ancestry controls	1,779 Korean ancestry cases, 1,709 Korean ancestry controls	4p14	KLF3, TBC1D1	rs6856616-C	0.23	4E-14		1.43	[1.31-1.57]	Illumina [5664371] (imputed)	N
877	chr4	38329782	38329783	rs987121	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	4p14		rs987121-T	0.602956	1E-10		0.014832815	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
877	chr4	38330841	38330842	rs7349623	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	4p14		rs7349623-C	0.431	4E-69				Affymetrix [10369434] (imputed)	N
877	chr4	38330841	38330842	rs7349623	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	4p14		rs7349623-T	0.568323	3E-12		0.015554444	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
877	chr4	38334530	38334531	rs986506	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	4p14		rs986506-?	NR	2E-12				NR [~ 8900000] (imputed)	N
877	chr4	38335066	38335067	rs73243351	30500874	Kakuta Y	2018-11-29	J Crohns Colitis	A genome-wide association study identifying RAP1A as a novel susceptibility gene for Crohn's disease in Japanese individuals.	Crohn's disease	713 Japanese ancestry cases, 2,083 Japanese ancestry controls	770 Japanese ancestry cases, 852 Japanese ancestry controls	4p14	intergenic	rs73243351-?	0.203	4E-8		1.53	NR	NR [4335144] (imputed)	N
877	chr4	38335822	38335823	rs1487630	23266558	Yamazaki K	2012-12-21	Gastroenterology	A genome-wide association study identifies 2 susceptibility Loci for Crohn's disease in a Japanese population.	Crohn's disease	372 Japanese ancestry cases,3,389 Japanese ancestry controls	Up to 1,151 Japanese ancestry cases, up to 15,800 Japanese ancestry controls	4p14	TBC1D1	rs1487630-T	NR	1E-11		1.33	[1.22-1.44]	Illumina [4929034] (imputed)	N
877	chr4	38343934	38343935	rs11721984	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	4p14		rs11721984-T	NR	2E-10		0.0141	[0.0098-0.0184] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
877	chr4	38343934	38343935	rs11721984	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	4p14		rs11721984-?	NR	1E-14				NR [~ 8900000] (imputed)	N
877	chr4	38359316	38359317	rs6819003	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	4p14		rs6819003-?	NR	1E-9				NR [~ 8900000] (imputed)	N
877	chr4	38359316	38359317	rs6819003	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	4p14		rs6819003-?	NR	6E-10				NR [~ 8900000] (imputed)	N
877	chr4	38361119	38361120	rs1386625	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	4p14	LINC01258	rs1386625-A	0.0934399	3E-50		0.0470172	[0.041-0.053] unit increase	NR [13737936] (imputed)	N
877	chr4	38361119	38361120	rs1386625	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	4p14		rs1386625-?	NR	2E-46				NR [~ 8900000] (imputed)	N
877	chr4	38361119	38361120	rs1386625	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	4p14		rs1386625-?	NR	7E-49		0.049771	[0.043-0.057] unit increase	Affymetrix [20259828] (imputed)	N
877	chr4	38361119	38361120	rs1386625	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	4p14	LINC01258	rs1386625-A	0.0973523	2E-10	(women)	0.0491273	[0.034-0.065] unit increase	NR [17166351] (imputed)	N
877	chr4	38361119	38361120	rs1386625	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	4p14	LINC01258	rs1386625-A	0.0970749	2E-17		0.0479176	[0.037-0.059] unit increase	NR [17166351] (imputed)	N
877	chr4	38361119	38361120	rs1386625	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	4p14	LINC01258	rs1386625-A	0.0967572	2E-6	(men)	0.0418004	[0.025-0.059] unit increase	NR [17166351] (imputed)	N
877	chr4	38361415	38361416	rs55843528	32581322	Kakuta Y	2020-06-24	Sci Rep	An Integrated Genomic and Transcriptomic Analysis Reveals Candidates of Susceptibility Genes for Crohn's Disease in Japanese Populations.	Crohn's disease	713 Japanese ancestry cases, 2,063 Japanese ancestry controls	NA	4p14	intergenic	rs55843528-?	NR	2E-7		1.08	[1.05-1.11]	NR [7424691] (imputed)	N
877	chr4	38363261	38363262	rs6841652	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	4p14		rs6841652-T	0.32	3E-85				Affymetrix [10369434] (imputed)	N
877	chr4	38363261	38363262	rs6841652	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	4p14		rs6841652-T	0.32	2E-83				Affymetrix [10369434] (imputed)	N
877	chr4	38364136	38364137	rs33942080	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	4p14		rs33942080-G	NR	2E-118		0.0591	[0.054-0.064] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
877	chr4	38364136	38364137	rs33942080	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	4p14	RP11-83C7.1	rs33942080-G	0.6811	7E-29		0.04276293	[0.035-0.05] unit decrease	Affymetrix [~ 2500000] (imputed)	N
877	chr4	38366089	38366090	rs13133642	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	4p14		rs13133642-T	0.319	5E-81				Affymetrix [10369434] (imputed)	N
877	chr4	38366089	38366090	rs13133642	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	4p14	NR	rs13133642-C	0.680761	2E-235		0.066249	[0.062-0.07] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
877	chr4	38366389	38366390	rs10213458	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	4p14	RP11-83C7.1	rs10213458-G	0.681604	3E-13		0.017336568	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
877	chr4	38366389	38366390	rs10213458	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4p14	NR	rs10213458-G	0.660031	5E-233				Affymetrix, Illumina [23472807] (imputed)	N
877	chr4	38366389	38366390	rs10213458	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	4p14	RP11-83C7.1	rs10213458-A	0.319084	3E-12		0.044955827	[0.032-0.058] unit increase	Affymetrix [7288503] (imputed)	N
877	chr4	38368634	38368635	rs901705	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	4p14	RP11-83C7.1	rs901705-G	0.6807	2E-14		0.0291822	[0.022-0.037] unit decrease	Affymetrix [~ 2500000] (imputed)	N
877	chr4	38372042	38372043	rs1386623	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	4p14	RP11-83C7.1	rs1386623-T	0.680784	4E-25		0.030159973	[0.024-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
877	chr4	38372042	38372043	rs1386623	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	4p14	RP11-83C7.1	rs1386623-T	0.680789	2E-44		0.041369416	[0.036-0.047] unit increase	Affymetrix [93095623] (imputed)	N
877	chr4	38372042	38372043	rs1386623	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	4p14	RP11-83C7.1	rs1386623-T	0.68079	6E-58		0.04643183	[0.041-0.052] unit increase	Affymetrix [93095623] (imputed)	N
877	chr4	38372054	38372055	rs1386622	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	4p14	RP11-83C7.1	rs1386622-G	0.6803	2E-55		0.06026967	[0.053-0.068] unit increase	Affymetrix [~ 2500000] (imputed)	N
877	chr4	38372054	38372055	rs1386622	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	4p14	RP11-83C7.1	rs1386622-G	0.6803	2E-72		0.06988003	[0.062-0.077] unit increase	Affymetrix [~ 2500000] (imputed)	N
877	chr4	38372994	38372995	rs1906292	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Bipolar disorder	11,897 European ancestry female cases, 15,538 European ancestry female controls, 8,027 European ancestry male cases, 15,009 European ancestry male controls	NA	4p14	TBC1D1, LINC01258	rs1906292-T	0.5717	7E-6	(female)	0.1083	[0.061-0.155] unit increase	NR [NR] (imputed)	N
877	chr4	38372994	38372995	rs1906292	31991592	Coltell O	2020-01-24	Nutrients	Genome-Wide Association Study for Serum Omega-3 and Omega-6 Polyunsaturated Fatty Acids: Exploratory Analysis of the Sex-Specific Effects and Dietary Modulation in Mediterranean Subjects with Metabolic Syndrome.	Serum polyunsaturated fatty acid concentration x Mediterranean diet adherence interaction in metabolic syndrome	248 Mediterranean individuals with low adherence to Mediterranean diet, 178 Mediterranean individuals with high adherence to Mediterranean diet	NA	4p14	LOC105374410	rs1906292-?	NR	9E-7	(linoleic acid)			Illumina [621723]	N
877	chr4	38376163	38376164	rs62294148	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	4p14	LINC01258	rs62294148-C	0.926942	2E-9		0.0211722	[0.014-0.028] unit decrease	NR [13737936] (imputed)	N
877	chr4	38385478	38385479	rs17499404	32678081	Timmers PRHJ	2020-07-16	Nat Commun	Multivariate genomic scan implicates novel loci and haem metabolism in human ageing.	Aging traits (healthspan, parental lifespan or longevity) (multivariate analysis)	at least 837,415 European ancestry individuals	NA	4p14	LINC02513	rs17499404-A	0.5367	4E-8				NR [7320282]	N
877	chr4	38387394	38387395	rs2291435	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Systolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	4p14	TBC1D1, FLJ13197	rs2291435-T	0.524	2E-14		0.3441	[0.26-0.43] mm Hg decrease	Affymetrix, Illumina, Perlegen [128272]	N
877	chr4	38387394	38387395	rs2291435	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Diastolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	4p14	TBC1D1, FLJ13197	rs2291435-T	0.524	4E-9		0.156	[0.1-0.21] mm Hg decrease	Affymetrix, Illumina, Perlegen [128272]	N
877	chr4	38387899	38387900	rs6812640	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	4p14	FLJ13197	rs6812640-G	0.4953	1E-9		0.1996	[0.14-0.26] mmHg increase	Affymetrix [NR] (imputed)	N
877	chr4	38393274	38393275	rs11726170	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	4p14		rs11726170-C	0.878	2E-12				Affymetrix [10369434] (imputed)	N
877	chr4	38395007	38395008	rs6824339	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	4p14		rs6824339-T	NR	1E-10		0.0327	[0.023-0.043] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
877	chr4	38395514	38395515	rs28702684	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls	NA	4p14	RP11-83C7.1	rs28702684-G	0.498848	8E-10		0.04827632	[0.033-0.064] unit increase	Affymetrix [7288503] (imputed)	N
877	chr4	38402182	38402183	rs13104866	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls, 22,356 East Asian ancestry cases, 156,370 East Asian ancestry controls	NA	4p14		rs13104866-A	NR	2E-10		0.0435	[0.03-0.057] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
877	chr4	38402182	38402183	rs13104866	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	4p14	TBC1D1, FLJ13197	rs13104866-G		4E-6		0.251	unit increase	Affymetrix [at least 2696785] (imputed)	N
877	chr4	38402182	38402183	rs13104866	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	4p14	TBC1D1, FLJ13197	rs13104866-G		4E-13		0.278	unit increase	Affymetrix [at least 2696785] (imputed)	N
877	chr4	38402182	38402183	rs13104866	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	4p14	TBC1D1, FLJ13197	rs13104866-G		3E-9		0.151	unit increase	Affymetrix [at least 2696785] (imputed)	N
877	chr4	38402182	38402183	rs13104866	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	4p14	TBC1D1, FLJ13197	rs13104866-G		2E-7		0.123	unit increase	Affymetrix [at least 2696785] (imputed)	N
878	chr4	38432455	38432456	rs55714934	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	334,468 European ancestry, NR ancestry individuals	NA	4p14		rs55714934-?	NR	5E-8				Affymetrix [NR] (imputed)	N
878	chr4	38450511	38450512	rs6831835	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	4p14	Intergenic	rs6831835-G	NR	2E-6		0.082669	[0.049-0.116] unit increase	Illumina [13520550] (imputed)	N
878	chr4	38452426	38452427	rs2381145	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	334,944 European ancestry, NR ancestry individuals	NA	4p14		rs2381145-?	NR	5E-8				Affymetrix [NR] (imputed)	N
878	chr4	38452426	38452427	rs2381145	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	334,468 European ancestry, NR ancestry individuals	NA	4p14		rs2381145-?	NR	5E-8				Affymetrix [NR] (imputed)	N
878	chr4	38452426	38452427	rs2381145	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	4p14	NR	rs2381145-C	0.798718	3E-8		0.00594	[0.0039-0.008] unit increase	Affymetrix [16582909] (imputed)	N
878	chr4	38452579	38452580	rs73243398	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	95,717 East Asian ancestry individuals	NA	4p14		rs73243398-A	0.219779	1E-15		0.0433975	[0.033-0.054] unit decrease	Illumina [13471431] (imputed)	N
878	chr4	38452579	38452580	rs73243398	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	89,266 East Asian ancestry individuals	NA	4p14	NR	rs73243398-G	0.783647	5E-17		0.049601	[0.038-0.061] SD units increase	Affymetrix, Illumina [16289068] (imputed)	N
878	chr4	38452579	38452580	rs73243398	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Lymphocyte counts	62,076 Japanese ancestry individuals	NA	4p14	LINC01258	rs73243398-?	NR	1E-10		0.04594	[0.032-0.06] unit decrease novel	Illumina [6108953] (imputed)	N
878	chr4	38456106	38456107	rs74692308	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		LINC01258	rs74692308-?	NR	3E-8		1.38827	[NR] unit decrease	Affymetrix [NR] (imputed)	N
878	chr4	38465470	38465471	rs4615179	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	4p14	FLJ13197	rs4615179-A	0.098	8E-6	(Urinary free epinephrine )	0.02	[NR] nmol/d increase	Illumina [899892]	N
878	chr4	38502367	38502368	rs79308330	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	4p14		rs79308330-A	0.375937	7E-10		0.0130296	[0.0089-0.0172] unit decrease	Illumina [13479295] (imputed)	N
878	chr4	38504068	38504069	rs73139938	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	4p14	LINC01258	rs73139938-?	NR	1E-9		0.018113809	[0.012-0.024] unit decrease	Illumina [27896057] (imputed)	N
878	chr4	38504736	38504737	rs142846286	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	4p14	Intergenic	rs142846286-A	0.998	3E-6	(AA)	0.398	NR unit increase	Illumina [NR] (imputed)	N
878	chr4	38525059	38525059	rs59345777	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	4p14		rs59345777-CA	NR	2E-8		0.0148	[0.0097-0.0199] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
878	chr4	38533498	38533499	rs7688574	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	4p14	NR	rs7688574-T	0.3707	3E-9		0.001386	[0.00093-0.00185] unit increase	Affymetrix [NR] (imputed)	N
879	chr4	38566399	38566400	rs34258575	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	4p14		rs34258575-C	0.965	4E-19				Affymetrix [10369434] (imputed)	N
879	chr4	38588452	38588453	rs11734570	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	4p14	intergenic	rs11734570-A	0.368	5E-8		1.07	1.05-1.10	Illumina [9725440] (imputed)	N
879	chr4	38588452	38588453	rs11734570	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	4p14	Intergenic	rs11734570-?		4E-7				Illumina [9560910] (imputed)	N
879	chr4	38591171	38591172	rs12651223	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	4p14		rs12651223-G	0.647	5E-25				Affymetrix [10369434] (imputed)	N
879	chr4	38591187	38591188	rs12510215	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	4p14		rs12510215-T	0.4992	2E-9	(conditional-joint)	0.0085	[0.0058-0.0112] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
879	chr4	38591859	38591860	rs10009513	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	4p14	NR	rs10009513-?	NR	2E-8	(right pallidum)			NR [9227495] (imputed)	N
879	chr4	38591859	38591860	rs10009513	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	4p14		rs10009513-A	0.483	3E-10		0.0088	[0.0061-0.0115] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
879	chr4	38591859	38591860	rs10009513	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	4p14	Intergenic	rs10009513-A	0.483	3E-11	(MTAG)	0.0087	[0.0062-0.0112] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
879	chr4	38593260	38593261	rs35608075	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	4p14	NR	rs35608075-C	0.247088	5E-11		0.0238486	[0.017-0.031] unit decrease	NR [19129689] (imputed)	N
879	chr4	38604469	38604470	rs337637	34127860	Robertson CC	2021-06-14	Nat Genet	Fine-mapping, trans-ancestral and genomic analyses identify causal variants, cells, genes and drug targets for type 1 diabetes.	Type 1 diabetes	20,065 European ancestry cases, 33,065 European ancestry controls, 1,045 other-admixed ancestry cases, 1,103 other-admixed ancestry controls, 1,043 African ancestry cases, 3,206 African ancestry controls	NA	4p14	KLF3	rs337637-A	0.364	3E-10		0.919		Illumina [715631] (imputed)	N
879	chr4	38604469	38604470	rs337637	34127860	Robertson CC	2021-06-14	Nat Genet	Fine-mapping, trans-ancestral and genomic analyses identify causal variants, cells, genes and drug targets for type 1 diabetes.	Type 1 diabetes	20,065 European ancestry cases, 33,065 European ancestry controls, 1,045 other-admixed ancestry cases, 1,103 other-admixed ancestry controls, 1,043 African ancestry cases, 3,206 African ancestry controls	NA	4p14	KLF3	rs337637-A	0.364	3E-10		0.919		Illumina [715631] (imputed)	N
879	chr4	38604469	38604470	rs337637	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4p14	NR	rs337637-A	0.353088	2E-24				Affymetrix, Illumina [24649327] (imputed)	N
879	chr4	38604806	38604807	rs337638	34098431	Ning K	2021-04-20	Neurobiol Aging	Improving brain age estimates with deep learning leads to identification of novel genetic factors associated with brain aging.	Relative brain age	16,998 European ancestry individuals	NA		KLF3	rs337638-?		3E-16				NR [538476]	N
879	chr4	38608379	38608380	rs150414227	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	4p14		rs150414227-C	0.003826	6E-13		0.13855949	[0.1-0.18] unit increase	Affymetrix [93095623] (imputed)	N
879	chr4	38608911	38608912	rs6855993	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	4p14	intergenic	rs6855993-T	0.2126	3E-10		0.02730825	[0.019-0.036] unit decrease	Affymetrix [~ 2500000] (imputed)	N
879	chr4	38615999	38616000	rs13111764	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	4p14		rs13111764-?	NR	5E-8				Affymetrix [NR] (imputed)	N
879	chr4	38615999	38616000	rs13111764	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	4p14		rs13111764-G	0.958	7E-11				Affymetrix [10369434] (imputed)	N
879	chr4	38615999	38616000	rs13111764	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	334,944 European ancestry, NR ancestry individuals	NA	4p14		rs13111764-?	NR	5E-8				Affymetrix [NR] (imputed)	N
879	chr4	38615999	38616000	rs13111764	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	4p14		rs13111764-G	0.958	1E-16				Affymetrix [10369434] (imputed)	N
879	chr4	38615999	38616000	rs13111764	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	334,468 European ancestry, NR ancestry individuals	NA	4p14		rs13111764-?	NR	5E-8				Affymetrix [NR] (imputed)	N
879	chr4	38615999	38616000	rs13111764	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	4p14		rs13111764-G	0.958	2E-16				Affymetrix [10369434] (imputed)	N
879	chr4	38617882	38617883	rs11730676	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	4p14	RP11-617D20.1	rs11730676-C	0.586731	9E-14		0.016956175	[0.013-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
879	chr4	38618688	38618689	rs2126526	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	4p14		rs2126526-G	NR	9E-12		0.0131	[0.0094-0.0168] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
879	chr4	38618688	38618689	rs2126526	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	4p14		rs2126526-A	0.409	6E-50				Affymetrix [10369434] (imputed)	N
879	chr4	38619405	38619405	rs112459818	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	4p14	RP11-617D20.1	rs112459818-CA	0.257912	1E-10		0.0155226	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
879	chr4	38619405	38619405	rs112459818	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	4p14	NR	rs112459818-I	0.258056	2E-10		0.01545	[0.011-0.02] SD unit decrease	Affymetrix, Illumina [50282193] (imputed)	N
879	chr4	38625915	38625915	rs11270836	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mumps	31,227 European ancestry cases, 54,153 European ancestry controls	NA	4p14	NR	rs11270836-?	NR	5E-6		0.0584	[0.033-0.083] unit increase	Illumina [at least 560000] (imputed)	N
879	chr4	38626129	38626130	rs28418927	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	4p14	NR	rs28418927-C	0.210892	5E-18		0.019508	[0.015-0.024] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
879	chr4	38634756	38634757	rs35771878	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	4p14		rs35771878-A	0.648	5E-30				Affymetrix [10369434] (imputed)	N
879	chr4	38634756	38634757	rs35771878	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	4p14	NR	rs35771878-?	NR	4E-9	(right pallidum)			NR [9227495] (imputed)	N
879	chr4	38638966	38638969	rs755342427	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	4p14	AC021860.1, RP11-617D20.1	rs755342427-C	0.334669	9E-11		0.015825327	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
879	chr4	38638966	38638969	rs755342427	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	4p14	AC021860.1, RP11-617D20.1	rs755342427-C	0.334676	1E-17		0.02078195	[0.016-0.026] unit increase	Affymetrix [93095623] (imputed)	N
879	chr4	38638966	38638969	rs755342427	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	4p14	AC021860.1, RP11-617D20.1	rs755342427-C	0.33467	1E-15		0.019460525	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
879	chr4	38645178	38645178	rs751167249	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	4p14	AC021860.1, RP11-617D20.1	rs751167249-AATGG	0.369745	3E-13		0.019883215	[0.015-0.025] unit increase	Affymetrix [93095623] (imputed)	N
879	chr4	38646099	38646100	rs28664852	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	4p14	AC021860.1, RP11-617D20.1	rs28664852-C	0.212354	7E-23		0.026846696	[0.022-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
879	chr4	38651938	38651939	rs6812216	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	4p14		rs6812216-A	0.29	4E-13		7.27	z score increase	Affymetrix [9061022] (imputed)	N
879	chr4	38651938	38651939	rs6812216	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	4p14		rs6812216-A	0.29	3E-15		7.9	z score increase	Affymetrix [9061022] (imputed)	N
879	chr4	38651938	38651939	rs6812216	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	4p14		rs6812216-A	0.29	8E-9		5.77	z score increase	Affymetrix [9061022] (imputed)	N
879	chr4	38651996	38651997	rs6813852	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	4p14	NR	rs6813852-T	0.3616	3E-12				NR [9056863] (imputed)	N
879	chr4	38652811	38652812	rs73134233	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	4p14	RP11-617D20.1, AC021860.1	rs73134233-G	NR	6E-9		0.0242788	[0.016-0.032] unit decrease	Affymetrix [323123] (imputed)	N
879	chr4	38653770	38653771	rs66540503	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	4p14		rs66540503-C	NR	4E-12		0.0119	[0.0086-0.0152] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
879	chr4	38653772	38653773	rs58785573	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4p14	NR	rs58785573-T	0.52636	2E-11				Affymetrix, Illumina [24588908] (imputed)	N
879	chr4	38653772	38653773	rs58785573	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	4p14	NR	rs58785573-T	0.586659	2E-11		0.013226	[0.0094-0.0171] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
879	chr4	38653772	38653773	rs58785573	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	4p14	RP11-617D20.1, AC021860.1	rs58785573-T	0.588	3E-24		0.0367388	[0.03-0.044] unit increase	Affymetrix [~ 2500000] (imputed)	N
879	chr4	38653772	38653773	rs138541467	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	4p14	AC021860.1, RP11-617D20.1	rs138541467-T	0.587212	2E-9		0.013795506	[0.0093-0.0183] unit increase	Affymetrix [93095623] (imputed)	N
879	chr4	38654680	38654681	rs4833079	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	4p14		rs4833079-T	0.577	7E-37				Affymetrix [10369434] (imputed)	N
879	chr4	38654680	38654681	rs4833079	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	4p14	NR	rs4833079-T	NR	8E-16		0.013	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
879	chr4	38654680	38654681	rs4833079	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	4p14	FLJ13197	rs4833079-T	0.604	9E-6		0.013	[0.0075-0.0193] kg/m2 increase	Affymetrix, Illumina [2550021]	N
879	chr4	38655771	38655772	rs12331049	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	4p14	AC021860.1, RP11-617D20.1	rs12331049-T	0.212191	2E-11		0.018347012	[0.013-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
879	chr4	38655771	38655772	rs12331049	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	4p14	AC021860.1, RP11-617D20.1	rs12331049-T	0.212112	3E-16		0.0233076	[0.018-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
879	chr4	38657818	38657819	rs75504410	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	4p14	RP11-617D20.1, AC021860.1	rs75504410-A	0.0678	9E-16		0.05720386	[0.043-0.071] unit decrease	Affymetrix [~ 2500000] (imputed)	N
879	chr4	38657818	38657819	rs75504410	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	4p14	RP11-617D20.1, AC021860.1	rs75504410-A	0.0678	3E-15		0.05605103	[0.042-0.07] unit decrease	Affymetrix [~ 2500000] (imputed)	N
879	chr4	38658782	38658782	rs568250334	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	4p14	AC021860.1, RP11-617D20.1	rs568250334-AAAAAT	0.471908	9E-10		0.014698466	[0.01-0.0194] unit increase	Affymetrix [93095623] (imputed)	N
879	chr4	38659262	38659263	rs337606	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	4p14		rs337606-?	NR	1E-22				NR [~ 8900000] (imputed)	N
879	chr4	38659593	38659594	rs34722008	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	4p14	NR	rs34722008-A	0.3619	2E-13				NR [9056863] (imputed)	N
879	chr4	38659593	38659594	rs34722008	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	4p14	THADA, ZFP36L2, PLEKHH2	rs34722008-?		2E-11				NR [7428630] (imputed)	N
879	chr4	38659593	38659594	rs34722008	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	4p14	AC021860.1, KLF3	rs34722008-?		3E-11				NR [7428630] (imputed)	N
879	chr4	38659593	38659594	rs34722008	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	4p14	AC021860.1	rs34722008-G	0.646531	2E-8		0.00826538	[0.0054-0.0111] unit increase	Affymetrix [12370749]	N
879	chr4	38663659	38663660	rs12507197	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	4p14		rs12507197-?	NR	3E-16				NR [~ 8900000] (imputed)	N
879	chr4	38663827	38663828	rs78976775	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	4p14	AC021860.1, RP11-617D20.1	rs78976775-C	0.068214	1E-23		0.04446951	[0.036-0.053] unit decrease	Affymetrix [93095623] (imputed)	N
879	chr4	38663827	38663828	rs78976775	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	4p14	AC021860.1, RP11-617D20.1	rs78976775-C	0.068201	1E-22		0.043404043	[0.035-0.052] unit decrease	Affymetrix [93095623] (imputed)	N
879	chr4	38664130	38664131	rs73232881	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4p14	NR	rs73232881-T	0.791532	3E-21				Affymetrix, Illumina [17210439] (imputed)	N
879	chr4	38664130	38664131	rs73232881	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4p14	NR	rs73232881-C	0.178772	9E-170				Affymetrix, Illumina [19872809] (imputed)	N
879	chr4	38664130	38664131	rs73232881	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	4p14	NR	rs73232881-C	0.213178	8E-171		0.067388	[0.063-0.072] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
879	chr4	38664130	38664131	rs73232881	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	4p14		rs73232881-?	NR	9E-152				NR [~ 8900000] (imputed)	N
879	chr4	38664498	38664499	rs2078179	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	4p14	RP11-617D20.1, AC021860.1	rs2078179-G	0.2142	2E-54		0.06732672	[0.059-0.076] unit increase	Affymetrix [~ 2500000] (imputed)	N
879	chr4	38665141	38665142	rs112691446	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	4p14	RP11-617D20.1, AC021860.1	rs112691446-A	0.2147	9E-40		0.05739092	[0.049-0.066] unit decrease	Affymetrix [~ 2500000] (imputed)	N
880	chr4	38673844	38673845	rs337623	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	4p14	KLF3	rs337623-G	0.803352	5E-10		0.017524272	[0.012-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
880	chr4	38677011	38677011	rs11429183	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	4p14	NR	rs11429183-I	0.446146	2E-29		0.023321	[0.019-0.027] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
880	chr4	38677012	38677012	rs552599526	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	4p14	KLF3	rs552599526-TC	0.446444	2E-42		0.031650495	[0.027-0.036] unit increase	Affymetrix [93095623] (imputed)	N
880	chr4	38677012	38677012	rs552599526	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	4p14	KLF3	rs552599526-TC	0.446427	1E-45		0.035932314	[0.031-0.041] unit increase	Affymetrix [93095623] (imputed)	N
880	chr4	38677012	38677012	rs552599526	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	4p14	KLF3	rs552599526-TC	0.4475	2E-13		0.02660141	[0.02-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
880	chr4	38677012	38677012	rs552599526	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	4p14	KLF3	rs552599526-TC	0.4475	2E-44		0.05080646	[0.044-0.058] unit increase	Affymetrix [~ 2500000] (imputed)	N
880	chr4	38677061	38677062	rs68191221	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	4p14	KLF3	rs68191221-G	0.2151	4E-43		0.0599293	[0.051-0.068] unit increase	Affymetrix [~ 2500000] (imputed)	N
880	chr4	38677061	38677062	rs68191221	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	4p14	KLF3	rs68191221-G	0.215	2E-48		0.06363204	[0.055-0.072] unit increase	Affymetrix [~ 2500000] (imputed)	N
880	chr4	38677226	38677227	rs34089598	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	4p14		rs34089598-A	0.572	4E-30				Affymetrix [10369434] (imputed)	N
880	chr4	38677226	38677227	rs34089598	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	4p14		rs34089598-?	NR	1E-18				NR [~ 8900000] (imputed)	N
880	chr4	38680014	38680015	rs13132853	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Triglycerides	429,011 European ancestry individuals	NA	4p14		rs13132853-A	0.64	1E-7		0.011	mmol/L decrease	NR [NR] (imputed)	N
880	chr4	38680014	38680015	rs13132853	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	4p14		rs13132853-A	0.64	4E-16				NR [NR] (imputed)	N
880	chr4	38680014	38680015	rs13132853	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	4p14		rs13132853-A	0.64	1E-8		0.009	% increase	NR [NR] (imputed)	N
880	chr4	38680014	38680015	rs13132853	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Alanine aminotransferase levels	429,203 European ancestry individuals	NA	4p14		rs13132853-A	0.64	9E-8		0.011	U/L decrease	NR [NR] (imputed)	N
880	chr4	38680014	38680015	rs13132853	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	4p14	KLF3	rs13132853-G	0.361141	3E-23		0.022984387	[0.018-0.028] unit increase	Affymetrix [93095623] (imputed)	N
880	chr4	38680014	38680015	rs13132853	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	4p14	KLF3	rs13132853-A	0.6352	9E-9		0.002	[0.0014-0.0026] unit decrease	Affymetrix [15275733] (imputed)	N
880	chr4	38680185	38680186	rs9992667	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	4p14	KLF3	rs9992667-T	0.213509	4E-145		0.070366986	[0.065-0.076] unit increase	Affymetrix [93095623] (imputed)	N
880	chr4	38680185	38680186	rs9992667	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	4p14	KLF3	rs9992667-T	0.213507	2E-131		0.066859394	[0.061-0.072] unit increase	Affymetrix [93095623] (imputed)	N
880	chr4	38680185	38680186	rs9992667	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	4p14	KLF3	rs9992667-T	0.2151	4E-45		0.06152656	[0.053-0.07] unit increase	Affymetrix [~ 2500000] (imputed)	N
880	chr4	38682611	38682612	rs7686818	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	4p14	KLF3	rs7686818-G	0.809457	1E-11		0.019714547	[0.014-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
880	chr4	38684200	38684201	rs6531656	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	4p14		rs6531656-T	NR	2E-14		0.0187	[0.014-0.023] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
880	chr4	38684200	38684201	rs6531656	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	4p14	KLF3	rs6531656-T	0.850786	1E-11		0.023271594	[0.017-0.03] unit increase	Affymetrix [93095623] (imputed)	N
880	chr4	38684200	38684201	rs6531656	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	4p14	KLF3	rs6531656-T	0.8508	5E-32		0.05989397	[0.05-0.07] unit increase	Affymetrix [~ 2500000] (imputed)	N
880	chr4	38685040	38685041	rs73232890	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	4p14		rs73232890-A	NR	4E-101		0.0458	[0.042-0.05] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
880	chr4	38687927	38687928	rs28681431	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	4p14		rs28681431-G	0.786	5E-55				Affymetrix [10369434] (imputed)	N
880	chr4	38687927	38687928	rs28681431	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	4p14	KLF3	rs28681431-A	0.213156	5E-15		0.02164967	[0.016-0.027] unit increase	Affymetrix [93095623] (imputed)	N
880	chr4	38687927	38687928	rs28681431	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	4p14	NR	rs28681431-G	0.787062	2E-21		0.022414	[0.018-0.027] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
880	chr4	38689041	38689042	rs17428931	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	4p14	KLF3	rs17428931-G	0.0655	4E-14		0.05483976	[0.041-0.069] unit increase	Affymetrix [~ 2500000] (imputed)	N
880	chr4	38689041	38689042	rs17428931	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	4p14	KLF3	rs17428931-G	0.0655	7E-17		0.060394	[0.046-0.075] unit decrease	Affymetrix [~ 2500000] (imputed)	N
880	chr4	38689744	38689745	rs17428945	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	4p14		rs17428945-?	NR	1E-27				NR [~ 8900000] (imputed)	N
880	chr4	38691023	38691024	rs2242189	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (lymphocyte)	21,347 Hispanic or Latin American individuals	NA	4p14		rs2242189-T	0.3509	9E-6		0.0535	[0.03-0.077] unit increase	Affymetrix, Illumina [NR] (imputed)	N
880	chr4	38692834	38692835	rs1000096	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	4p14	NR	rs1000096-?	NR	3E-13				Affymetrix [~ 8270000] (imputed)	N
880	chr4	38692834	38692835	rs1000096	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	4p14	NA	rs1000096-T	0.3819	2E-16		0.0145	[0.011-0.018] unit decrease	NR [~ 27400000] (imputed)	N
880	chr4	38692834	38692835	rs1000096	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	4p14	NA	rs1000096-T	0.3819	2E-16		0.0145	[0.011-0.018] unit decrease	NR [~ 27400000] (imputed)	N
880	chr4	38697807	38697810	rs368938916	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	4p14	KLF3	rs368938916-G	0.491264	5E-18		0.019913344	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
880	chr4	38698923	38698924	rs36023504	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	4p14		rs36023504-T	NR	5E-9		0.0141	[0.0094-0.0188] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
880	chr4	38698923	38698924	rs36023504	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	4p14	KLF3	rs36023504-T	0.383945	5E-15		0.018228808	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
880	chr4	38698923	38698924	rs36023504	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	4p14	KLF3	rs36023504-T	0.383941	1E-12		0.016519593	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
880	chr4	38698923	38698924	rs36023504	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		4p14	KLF3	rs36023504-C	0.617088	5E-8		0.00777395	[0.005-0.0106] unit increase	Affymetrix [12370749]	N
880	chr4	38698923	38698924	rs36023504	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	4p14		rs36023504-?	NR	3E-11				NR [~ 8900000] (imputed)	N
880	chr4	38698923	38698924	rs36023504	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	4p14		rs36023504-?	NR	2E-14				NR [~ 8900000] (imputed)	N
880	chr4	38699656	38699657	rs3209570	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	4p14		rs3209570-A	NR	2E-9		0.0143	[0.0096-0.019] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
880	chr4	38703775	38703776	rs10029476	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	4p14	Intergenic	rs10029476-A	0.7008	3E-10	(MTAG)	0.009	[0.0063-0.0117] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
880	chr4	38721163	38721164	rs2045769	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	4p14	KLF3	rs2045769-C	NR	5E-6		1.0637165	NR	Affymetrix, Illumina [8278136] (imputed)	N
880	chr4	38722963	38722964	rs11096954	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	4p14	NR	rs11096954-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
880	chr4	38737460	38737461	rs1156211	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	4p14		rs1156211-G	0.46033	3E-10		0.0146414405	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
880	chr4	38745481	38745482	rs10008032	29785011	Zhu Z	2018-05-21	Nat Genet	A genome-wide cross-trait analysis from UK Biobank highlights the shared genetic architecture of asthma and allergic diseases.	Allergic disease (asthma, hay fever or eczema)	25,685 European ancestry allergic diseases cases, 76,768 European ancestry controls	NA	4p14	KLF3	rs10008032-?	NR	2E-10		1.0638298	[1.04-1.09]	Affymetrix [74888535] (imputed)	N
880	chr4	38747087	38747088	rs6847640	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	4p14	NR	rs6847640-?	NR	9E-15				Affymetrix [~ 8270000] (imputed)	N
880	chr4	38749431	38749432	rs73234986	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	4p14	RNA5SP158	rs73234986-T	NR	1E-8		0.0221891	[0.015-0.03] unit increase	Affymetrix [321016] (imputed)	N
880	chr4	38755476	38755477	rs111066798	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	4p14	NR	rs111066798-?	NR	1E-20				Affymetrix [~ 8270000] (imputed)	N
880	chr4	38755969	38755970	rs114559131	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	4p14	NR	rs114559131-?	NR	8E-9				Affymetrix [~ 8270000] (imputed)	N
880	chr4	38755969	38755970	rs114559131	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	4p14	TLR1, TLR10	rs114559131-A	0.813234	3E-10		1.0522192	[1.04-1.07]	Affymetrix [8274727] (imputed)	N
880	chr4	38764111	38764112	rs10024216	29293537	Gorlova OY	2018-01-02	PLoS One	Gene-level association analysis of systemic sclerosis: A comparison of African-Americans and White populations.	Systemic sclerosis (anti-topoisomerase-positive)	347 European ancestry cases, 3,466 European ancestry controls, 69 African American cases, 260 African American controls	NA	4p14	TLR1, TLR10	rs10024216-?		2E-6	(EA)			Illumina [~ 2500000] (imputed)	N
880	chr4	38765719	38765720	rs10008492	29608257	Painter JN	2018-04-02	Cancer Med	Genetic overlap between endometriosis and endometrial cancer: evidence from cross-disease genetic correlation and GWAS meta-analyses.	Endometriosis or endometrial cancer (pleiotropy)	3,194 endometriosis cases, 5,330 non-endometriosis controls, 2,057 endometrial cancer cases, 3,866 non-endometrial cancer controls	NA	4p14	KLF3, TLR10	rs10008492-T	NR	2E-6		1.14	[1.08-1.2]	Illumina [462430]	N
880	chr4	38768286	38768287	rs13107091	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	4p14	NR	rs13107091-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
880	chr4	38774488	38774489	rs9715769	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Interleukin-27 levels	21,758 European ancestry individuals	9,173 individuals	4p14		rs9715769-A	0.82	2E-15		0.0931	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
880	chr4	38776234	38776235	rs11466653	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	4p14	NR	rs11466653-?	NR	2E-7	(AA)	78.65	[69.73-87.57]	Illumina [905956]	N
880	chr4	38776941	38776942	rs11466648	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	4p14	NR	rs11466648-?	NR	5E-9				Affymetrix [NR]	N
880	chr4	38784266	38784267	rs28393318	29785011	Zhu Z	2018-05-21	Nat Genet	A genome-wide cross-trait analysis from UK Biobank highlights the shared genetic architecture of asthma and allergic diseases.	Asthma or allergic disease (pleiotropy)	14,085 European asthma cases, 25,685 European ancestry allergic diseases cases, 76,768 European ancestry controls	NA	4p14	FAM114A1, MIR574, TLR1, TLR6, TLR10	rs28393318-?	NR	2E-19		1.0869565		NR [74888535] (imputed)	N
880	chr4	38784723	38784724	rs10004195	23652523	Mayerle J	2013-05-08	JAMA	Identification of genetic loci associated with Helicobacter pylori serologic status.	Helicobacter pylori serologic status	2,623 European ancestry high titer cases, 7,862 European ancestry low or no titer controls	NA	4p14	FAM114A1, TLR10, TLR1, TLR6, KLF3	rs10004195-A	0.75	1E-18		1.43	[1.32-1.54]	Affymetrix, Illumina [~ 2500000] (imputed)	N
880	chr4	38789131	38789132	rs28690449	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	4p14	TLR1, TLR10	rs28690449-T	0.2014	4E-24				Affymetrix [15688218] (imputed)	N
880	chr4	38789131	38789132	rs28690449	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic disease (asthma, hay fever or eczema)	106,772 European ancestry cases, 239,773 European ancestry controls	83,335 cases, 34,934 controls	4p14	NR	rs28690449-C	0.7986	2E-64		1.1238481	[1.11-1.14]	Affymetrix [15688218] (imputed)	N
880	chr4	38789739	38789740	rs4833093	29785011	Zhu Z	2018-05-21	Nat Genet	A genome-wide cross-trait analysis from UK Biobank highlights the shared genetic architecture of asthma and allergic diseases.	Allergic disease (asthma, hay fever or eczema)	25,685 European ancestry allergic diseases cases, 76,768 European ancestry controls	NA	4p14	FAM114A1, MIR574, TLR1, TLR6, TLR10	rs4833093-?	NR	7E-20		1.1235955	[1.1-1.16]	Affymetrix [74888535] (imputed)	N
880	chr4	38792339	38792340	rs6531663	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (multivariate analysis)	477,968 European ancestry individuals	NA	4p14	TLR10, TLR1	rs6531663-T	0.808	3E-38		0.067	[0.057-0.077] unit decrease	NR [NR] (imputed)	N
880	chr4	38792339	38792340	rs6531663	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (age of onset)	117,130 European ancestry individuals	NA	4p14	TLR10, TLR1	rs6531663-T	0.808	3E-38		0.067	[0.057-0.077] unit decrease	NR [7647814] (imputed)	N
880	chr4	38792523	38792524	rs4543123	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	C-C motif chemokine 3 levels	21,758 European ancestry individuals	9,173 individuals	4p14		rs4543123-A	0.75	1E-11		0.07	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
880	chr4	38792523	38792524	rs4543123	29293537	Gorlova OY	2018-01-02	PLoS One	Gene-level association analysis of systemic sclerosis: A comparison of African-Americans and White populations.	Limited cutaneous systemic scleroderma	1,087 European ancestry cases, 3,466 European ancestry controls, 82 African American cases, 260 African American controls	NA	4p14	TLR10	rs4543123-?	NR	2E-7	(EA)			Illumina [~ 2500000] (imputed)	N
880	chr4	38792523	38792524	rs4543123	23743675	Kapoor M	2013-06-07	Hum Genet	A meta-analysis of two genome-wide association studies to identify novel loci for maximum number of alcoholic drinks.	Alcohol consumption	2,322 European ancestry individuals from 118 families, 2,593 European ancestry individuals		4p14	intergenic	rs4543123-?	0.24	9E-6		0.08	[0.041-0.119] unit increase	Illumina [4058415] (imputed)	N
881	chr4	38798647	38798648	rs5743618	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pediatric asthma	27,712 European ancestry cases, 411,131 European ancestry controls, 547 East Asian ancestry cases, 161,803 East Asian ancestry controls	NA	4p14		rs5743618-A	NR	2E-10		0.0717	[0.05-0.094] unit decrease	Affymetrix, Illumina [25832605] (imputed)	N
881	chr4	38798647	38798648	rs5743618	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Asthma	38,369 European ancestry cases, 411,131 European ancestry controls, 13,015 East Asian ancestry cases, 162,933 East Asian ancestry controls	NA	4p14		rs5743618-A	NR	3E-11		0.0664	[0.047-0.086] unit decrease	Affymetrix, Illumina [25837673] (imputed)	N
881	chr4	38798647	38798648	rs5743618	34103634	Valette K	2021-06-08	Commun Biol	Prioritization of candidate causal genes for asthma in susceptibility loci derived from UK Biobank.	Asthma	56,167 White-British ancestry cases, 352,255 White-British ancestry controls	NA	4p14	TLR1	rs5743618-A	0.225706912525391	3E-17		0.06644481	[0.051-0.082] unit decrease	Affymetrix [35186738] (imputed)	N
881	chr4	38798647	38798648	rs5743618	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	4p14	TLR1	rs5743618-C	0.73	4E-42				NR [> 9500000] (imputed)	N
881	chr4	38798647	38798648	rs5743618	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	4p14	TLR1	rs5743618-C	0.732705	7E-43		1.1047432	[1.0891439397501-1.12056588422624]	NR [9572556] (imputed)	N
881	chr4	38798647	38798648	rs5743618	31959851	Olafsdottir TA	2020-01-20	Nat Commun	Eighty-eight variants highlight the role of T cell regulation and airway remodeling in asthma pathogenesis.	Asthma	16,247 European ancestry cases, 346,486 European ancestry controls, 52,942 cases, 355,713 controls	NA	4p14	TLR1, TLR10, TLR6, FAM114A1, MIR574, KLF3	rs5743618-C	0.77429	4E-17		1.0640788	[1.05-1.08]	Affymetrix [32463443] (imputed)	N
881	chr4	38798647	38798648	rs5743618	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (childhood onset)	9,433 British ancestry cases, 318,237 British ancestry controls	NA	4p14	TLR1, TLR10, TLR6	rs5743618-C	0.774	3E-32		1.249	[1.203-1.295]	Affymetrix [10894596] (imputed)	N
881	chr4	38798647	38798648	rs5743618	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (age of onset)	37,846 British ancestry individuals	NA	4p14	TLR1, TLR10, TLR6	rs5743618-C	0.774	5E-22		1.578	[1.26-1.9] unit decrease	Affymetrix [10894596] (imputed)	N
881	chr4	38798647	38798648	rs5743618	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma onset (childhood vs adult)	13,962 European ancestry childhood onset cases, 14,873 European ancestry adult onset cases	31,002 European ancestry childhood onset cases, 16,297 European ancestry adult onset cases	4p14	TLR1	rs5743618-C	0.764	3E-21		1.114	[1.09-1.14]	Affymetrix [9000000] (imputed)	N
881	chr4	38798647	38798648	rs5743618	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	4p14	TLR1	rs5743618-?	NR	3E-74		1.165	[1.15-1.18]	Affymetrix [9000000] (imputed)	N
881	chr4	38798647	38798648	rs5743618	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	4p14	TLR1	rs5743618-C	NR	2E-31		1.097	[1.08-1.11]	Affymetrix [9000000] (imputed)	N
881	chr4	38798647	38798648	rs5743618	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Respiratory diseases	approximately 459,000 European ancestry individuals	NA	4p14		rs5743618-?	NR	1E-19				NR [~ 8900000] (imputed)	N
881	chr4	38798647	38798648	rs5743618	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	4p14		rs5743618-?	NR	4E-114				NR [~ 8900000] (imputed)	N
881	chr4	38798647	38798648	rs5743618	30013184	Waage J	2018-07-16	Nat Genet	Genome-wide association and HLA fine-mapping studies identify risk loci and genetic pathways underlying allergic rhinitis.	Allergic rhinitis	59,762 European and unknown ancestry cases, 152,358 European and unknown ancestry controls	60,720 European ancestry cases, 618,527 European ancestry controls	4p14	TLR1, TLR10	rs5743618-C	0.7283	4E-27		1.1111112	[1.09-1.12]	Affymetrix, Illumina, Perlegen [16531985] (imputed)	N
881	chr4	38798647	38798648	rs5743618	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	4p14	TLR1	rs5743618-C	0.7	3E-58		1.1	[1.09-1.11]	Affymetrix, Illumina [8307659] (imputed)	N
881	chr4	38798647	38798648	rs5743618	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	Composite immunoglobulin trait (IgG/IgM)	14,183 Icelandic ancestry individuals	2,146 Swedish ancestry individuals	4p14	TLR1	rs5743618-A	0.3481	4E-9		0.08	NR SD units decrease	Illumina [21568490] (imputed)	N
881	chr4	38798647	38798648	rs5743618	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Asthma	28,399 European ancestry cases, 128,843 European ancestry controls	NA	4p14	TLR1	rs5743618-?	NR	4E-11		1.082	[1.057-1.107]	Illumina [13747813] (imputed)	N
881	chr4	38798934	38798935	rs5743614	34116867	Tanaka N	2021-06-02	J Allergy Clin Immunol	Eight novel susceptibility loci and putative causal variants in atopic dermatitis.	Atopic dermatitis	2,597 Japanese ancestry cases, 110,504 Japanese ancestry controls, 25,685 European ancestry cases, 76,768 European ancestry controls	NA	4p14		rs5743614-?	NR	4E-18		0.9	[0.88-0.92]	Illumina [5170515] (imputed)	N
881	chr4	38799709	38799710	rs4833095	24388013	Ferreira MA	2013-12-30	J Allergy Clin Immunol	Genome-wide association analysis identifies 11 risk variants associated with the asthma with hay fever phenotype.	Asthma and hay fever	6,685 European ancestry cases, 14,091 European ancestry controls	878 European ancestry cases, 2,455 European ancestry controls	4p14	TLR1	rs4833095-T	0.74	5E-12		1.2	[1.14-1.26]	Illumina [up to 4972397] (imputed)	N
881	chr4	38801044	38801045	rs5743605	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque score in type 2 diabetes	691 African American individuals	205 African American individuals	4p14	TLR1	rs5743605-?	NR	4E-6		0.915	[0.41-1.42] unit decrease	Illumina [at least 13000000] (imputed)	N
881	chr4	38801284	38801285	rs5743604	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	C-C motif chemokine 4 levels	21,758 European ancestry individuals	9,173 individuals	4p14		rs5743604-A	0.75	5E-10		0.075	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
881	chr4	38801284	38801285	rs5743604	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	4p14	NR	rs5743604-A	0.8013	1E-72		1.1467891	[1.13-1.16]	Affymetrix [15688218] (imputed)	N
881	chr4	38802345	38802346	rs5743597	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	4p14	NR	rs5743597-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
881	chr4	38811050	38811051	rs11727978	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Allergy	66,973 European ancestry cases, 113,768 European ancestry controls	NA	4p14	TLR1, TLR6	rs11727978-?	NR	1E-15		1.083	[1.062-1.104]	Illumina [12845910] (imputed)	N
881	chr4	38811550	38811551	rs2101521	23817569	Hinds DA	2013-06-30	Nat Genet	A genome-wide association meta-analysis of self-reported allergy identifies shared and allergy-specific susceptibility loci.	Self-reported allergy	53,862 European ancestry individuals	NA	4p14	TLR10, TLR1, TLR6	rs2101521-A	0.2384	5E-21		0.1374	[0.11-0.17] unit decrease	Illumina [2400000] (imputed)	N
881	chr4	38812875	38812876	rs17616434	30013184	Waage J	2018-07-16	Nat Genet	Genome-wide association and HLA fine-mapping studies identify risk loci and genetic pathways underlying allergic rhinitis.	Allergic sensitization	8,040 European ancestry cases, 16,441 European ancestry controls	NA	4p14	TLR1, TLR6	rs17616434-T	0.78	2E-13		1.2195122	[1.15-1.28]	Affymetrix, Illumina [16531985] (imputed)	N
881	chr4	38812875	38812876	rs17616434	23817571	Bonnelykke K	2013-06-30	Nat Genet	Meta-analysis of genome-wide association studies identifies ten loci influencing allergic sensitization.	Allergic sensitization	5,789 European ancestry cases, 10,056 European ancestry controls	6,114 European ancestry cases, 9,920 European ancestry controls	4p14	FAM114A1, MIR574, TLR10, TLR1, TLR6	rs17616434-T	0.78	5E-11		1.23	[1.18-1.29]	Affymetrix, Illumina [~ 2500000] (imputed)	N
881	chr4	38815501	38815502	rs4833103	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	4p14	NR	rs4833103-?	NR	2E-18				Affymetrix [~ 8270000] (imputed)	N
881	chr4	38815501	38815502	rs4833103	27670767	Chang SW	2016-09-27	Pharmacogenomics J	Genome-wide association study identifies pharmacogenomic loci linked with specific antihypertensive drug treatment and new-onset diabetes.	Diabetes in response to antihypertensive drug treatment (treatment strategy interaction)	138 European American hypertensive cases with diabetes, 414 European American hypertensive cases without diabetes	157 Hispanic hypertensive cases with diabetes, 314 Hispanic hypertensive cases without diabetes, 39 African American hypertensive cases with diabetes, 78 African American hypertensive cases without diabetes	4p14	TLR10, TLR6, TLR1	rs4833103-?	0.50	1E-7	(European)	5.26	[4.63-5.89]	Illumina [NR] (imputed)	N
881	chr4	38816337	38816338	rs6815814	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	4p14		rs6815814-A	NR	1E-11		0.96	[0.95-0.97]	Affymetrix, Illumina [NR] (imputed)	N
881	chr4	38816337	38816338	rs6815814	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	4p14	intergenic	rs6815814-C	0.26	6E-13	(EA)	1.06	[1.04-1.08] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
881	chr4	38819402	38819403	rs66819621	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic rhinitis	18,915 European ancestry cases, 239,773 European ancestry controls	NA	4p14	TLR1	rs66819621-A	0.8428	2E-25		1.1799409	[1.15-1.22]	Affymetrix [15688218] (imputed)	N
881	chr4	38819849	38819850	rs6842071	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	4p14	NR	rs6842071-?	NR	6E-10				Illumina [7760689] (imputed)	N
881	chr4	38820690	38820691	rs75983064	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	4p14	NR	rs75983064-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
881	chr4	38854368	38854369	rs148906978	29785011	Zhu Z	2018-05-21	Nat Genet	A genome-wide cross-trait analysis from UK Biobank highlights the shared genetic architecture of asthma and allergic diseases.	Allergic disease (asthma, hay fever or eczema)	25,685 European ancestry allergic diseases cases, 76,768 European ancestry controls	NA	4p14	TLR6	rs148906978-?	NR	1E-16		1.1235955	[1.09-1.15]	Affymetrix [74888535] (imputed)	N
881	chr4	38860105	38860106	rs151067434	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	4p14		rs151067434-?	NR	3E-12				NR [~ 8900000] (imputed)	N
881	chr4	38878080	38878081	rs112818872	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	334,468 European ancestry, NR ancestry individuals	NA	4p14		rs112818872-?	NR	5E-8				Affymetrix [NR] (imputed)	N
881	chr4	38881887	38881888	rs11943027	24166409	Gelernter J	2014-01-01	Mol Psychiatry	Genome-wide association study of alcohol dependence:significant findings in African- and European-Americans including novel risk loci.	Alcohol dependence	4,629 African American individuals, 5,131 European ancestry individuals	801 African American individuals, 1,746 European ancestry individuals	4p14	FAM114A1	rs11943027-?	NR	6E-6				Illumina [up to 10421983] (imputed)	N
881	chr4	38915300	38915301	rs116205103	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Non-small cell lung cancer	27,120 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	4p14	NR	rs116205103-G	0.94	2E-7		0.83	[0.77-0.89]	NR [NR] (imputed)	N
882	chr4	38937371	38937372	rs2271031	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	4p14		rs2271031-?	NR	1E-7				NR [~ 8900000] (imputed)	N
882	chr4	38939256	38939257	rs1553479	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	4p14		rs1553479-C	NR	5E-8		0.1158	[0.074-0.157] unit increase	Affymetrix, Illumina [20535842] (imputed)	N
882	chr4	38942847	38942848	rs144610116	28753643	Yeo A	2017-07-28	PLoS One	Pharmacogenetic meta-analysis of baseline risk factors, pharmacodynamic, efficacy and tolerability endpoints from two large global cardiovascular outcomes trials for darapladib.	Moderate or severe diarrhoea in darapladib-treated cardiovascular disease (time to event)	212 European ancestry cases	NA	4p14	FAM114A1	rs144610116-C	0.0083	7E-9		89.29	[19.61-400]	Affymetrix, Illumina [9334585] (imputed)	N
882	chr4	38947689	38947690	rs4833111	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	4p14	FAM114A1	rs4833111-C	0.6054	5E-11		0.02389357	[0.017-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
882	chr4	38952029	38952030	rs7694333	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	4p14	FAM114A1	rs7694333-A	0.59123	1E-9		0.01387731	[0.0094-0.0184] unit decrease	Affymetrix [93095623] (imputed)	N
882	chr4	38953015	38953016	rs6810965	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	4p14		rs6810965-A	0.591715	7E-14		0.017032789	[0.013-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
882	chr4	38954195	38954196	rs10007270	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	4p14		rs10007270-T	0.592603	1E-13		0.0187583	[0.015-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
882	chr4	38966074	38966075	rs2055576	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	4p14		rs2055576-?	NR	6E-13				NR [~ 8900000] (imputed)	N
882	chr4	38977658	38977659	rs147292403	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		TMEM156	rs147292403-?	NR	9E-11		1.64489	[NR] unit decrease	Affymetrix [NR] (imputed)	N
882	chr4	38977658	38977659	rs147292403	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		TMEM156	rs147292403-?	NR	7E-9	(male)	1.6355	[NR] unit decrease	Affymetrix [NR] (imputed)	N
882	chr4	38996233	38996234	rs12643669	29532581	Hallfors J	2018-03-13	Addict Biol	Genome-wide association study in Finnish twins highlights the connection between nicotine addiction and neurotrophin signaling pathway.	Nicotine dependence symptom count	1,715 Finnish ancestry ever smoker individuals from 739 families	NA	4p14	NR	rs12643669-A	0.399	7E-6		0.27	[0.15-0.39] unit increase	Illumina [9469131] (imputed)	N
882	chr4	39030182	39030183	rs2254075	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	4p14		rs2254075-G	NR	3E-24		0.0224	[0.018-0.027] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
882	chr4	39030182	39030183	rs2254075	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	4p14		rs2254075-?	NR	2E-17				NR [~ 8900000] (imputed)	N
882	chr4	39033517	39033518	rs57819604	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	4p14	TMEM156	rs57819604-A	0.666513	2E-13		0.017354956	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
882	chr4	39033517	39033518	rs57819604	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	4p14	TMEM156	rs57819604-A	0.666497	3E-18		0.020493971	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
882	chr4	39035618	39035619	rs2711977	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4p14	NR	rs2711977-T	0.680441	4E-26				Affymetrix, Illumina [23467995] (imputed)	N
882	chr4	39039257	39039258	rs2711981	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	4p14		rs2711981-C	0.337	7E-11				Affymetrix [10369434] (imputed)	N
882	chr4	39039257	39039258	rs2711981	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	4p14	TMEM156	rs2711981-T	0.662853	2E-15		0.01878111	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
882	chr4	39039257	39039258	rs2711981	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	4p14	TMEM156	rs2711981-C	0.337123	8E-25		0.02422179	[0.02-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
882	chr4	39039257	39039258	rs2711981	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	4p14	NR	rs2711981-T	0.663087	2E-27		0.0216	[0.018-0.025] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
883	chr4	39080128	39080129	rs7692786	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	4p14		rs7692786-?	NR	1E-7				NR [~ 8900000] (imputed)	N
883	chr4	39088340	39088341	rs35141484	23829686	Ding L	2013-07-05	Hum Genomics	Rank-based genome-wide analysis reveals the association of ryanodine receptor-2 gene variants with childhood asthma among human populations.	Asthma (childhood onset)	429 European ancestry affected offspring trios	52 African American affected offspring trios, 46 Hispanic affected offspring trios	4p14	KLHL5	rs35141484-?	NR	3E-7				Affymetrix [786195]	N
883	chr4	39106918	39106919	rs1036034	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	4p14		rs1036034-?	NR	4E-8				NR [~ 8900000] (imputed)	N
883	chr4	39124749	39124750	rs1061377	21294900	Charles BA	2011-02-04	BMC Med Genomics	A genome-wide association study of serum uric acid in African Americans.	Uric acid levels	1,017 African American individuals	NA	4p14	RP11-360F5.1	rs1061377-A	0.46	3E-6		0.16	[0.093-0.227] unit increase	Affymetrix [2366856] (imputed)	N
883	chr4	39135563	39135564	rs10018622	28817678	Archer NP	2017-08-17	PLoS One	Family-based exome-wide association study of childhood acute lymphoblastic leukemia among Hispanics confirms role of ARID5B in susceptibility.	Acute lymphoblastic leukemia (childhood)	203 Hispanic cases and 96 Native American cases from 323 families	NA	4p14	Intergenic	rs10018622-?	0.24	4E-6		1.9607843	[1.45-2.63]	Illumina [up to 237436]	N
883	chr4	39154857	39154858	rs185821376	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	4p14		rs185821376-T	0.0161	4E-6		1.913		NR [11110260] (imputed)	N
883	chr4	39170776	39170777	rs531682744	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	4p14		rs531682744-A	0.0161	4E-6		1.909		NR [11110260] (imputed)	N
884	chr4	39213911	39213912	rs79515186	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid pneumonia vs population)	1,004 European ancestry cases, 680,354 European ancestry controls, 218 Hispanic or Latin American cases, 94,318 Hispanic or Latin American controls, 64 Black or African American cases, 22,412 Black or African American controls	NA	4p14		rs79515186-?	NR	1E-5		0.7196878	[0.4-1.04] unit decrease	Illumina [9901720] (imputed)	N
884	chr4	39251425	39251426	rs183630707	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Sensorimotor dexterity	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	4p14	WDR19	rs183630707-G	NR	2E-6		0.4273323	[0.2-0.66] unit decrease	Illumina [> 6200000] (imputed)	N
884	chr4	39286948	39286949	rs11096990	24684796	Cox AJ	2014-03-11	Neurobiol Aging	Heritability and genetic association analysis of cognition in the Diabetes Heart Study.	Cognitive function	423 type 2 diabetes cases and 127 unaffected siblings from 257 families	NA	4p14	WDR19	rs11096990-T	0.342	6E-7	(3MSE)	2.0117	[1.23-2.79] unit decrease	Affymetrix [> 371951] (imputed)	N
884	chr4	39289307	39289308	rs17754	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4p14	NR	rs17754-C	0.570339	7E-16				Affymetrix, Illumina [24332387] (imputed)	N
884	chr4	39294235	39294239	rs201611143	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	4p14	RFC1	rs201611143-A	0.514196	8E-32		0.026645584	[0.022-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
884	chr4	39294235	39294239	rs201611143	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	4p14	RFC1	rs201611143-A	0.514214	1E-25		0.023922311	[0.019-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
884	chr4	39294235	39294239	rs201611143	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	4p14	RFC1	rs201611143-A	0.514071	6E-31		0.0265707	[0.022-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
884	chr4	39296166	39296167	rs6531706	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	4p14		rs6531706-T	0.565	6E-17		0.09	[-0.12--0.07] % decrease	Affymetrix [NR] (imputed)	N
884	chr4	39318705	39318706	rs2066790	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	4p14	MIR1273H	rs2066790-?	NR	6E-9		0.019416908	[0.013-0.026] unit decrease	Illumina [27896057] (imputed)	N
884	chr4	39319763	39319764	rs17335027	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	4p14		rs17335027-A	NR	7E-18		0.0112	[0.0087-0.0137] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
885	chr4	39327343	39327344	rs6815859	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	121,047 East Asian ancestry individuals	NA	4p14	NR	rs6815859-G	0.624774	5E-16		0.034055	[0.026-0.042] SD units decrease	Affymetrix, Illumina [16286195] (imputed)	N
885	chr4	39334386	39334387	rs7658917	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	153,512 East Asian ancestry individuals	NA	4p14		rs7658917-C	0.594308	2E-11		0.0215724	[0.015-0.028] unit increase	Illumina [13479135] (imputed)	N
885	chr4	39334386	39334387	rs7658917	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	4p14		rs7658917-C	0.594442	4E-18		0.0320177	[0.025-0.039] unit decrease	Illumina [13476266] (imputed)	N
885	chr4	39334386	39334387	rs7658917	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	119,629 East Asian ancestry individuals	NA	4p14	NR	rs7658917-T	0.407113	6E-13		0.030393	[0.022-0.039] SD units increase	Affymetrix, Illumina [16286228] (imputed)	N
885	chr4	39336952	39336953	rs3796517	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	4p14	RFC1	rs3796517-G	0.34458	2E-10		0.015003681	[0.01-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
885	chr4	39336952	39336953	rs3796517	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	4p14	RFC1	rs3796517-G	0.344585	2E-11		0.015692133	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
885	chr4	39361068	39361069	rs6835111	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular volume	108,256 Japanese ancestry individuals	NA	4p14	MIR1273H	rs6835111-?	NR	1E-14		0.03388	[0.025-0.042] unit decrease novel	Illumina [6108953] (imputed)	N
885	chr4	39361068	39361069	rs6835111	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin	108,054 Japanese ancestry individuals	NA	4p14	MIR1273H	rs6835111-?	NR	4E-12		0.03048	[0.022-0.039] unit decrease novel	Illumina [6108953] (imputed)	N
885	chr4	39361976	39361977	rs4974938	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	4p14		rs4974938-T	0.415494	2E-15		0.0295097	[0.022-0.037] unit increase	Illumina [13476299] (imputed)	N
885	chr4	39364687	39364688	rs16995255	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	4p14	RFC1	rs16995255-G	0.344932	1E-9		0.014409369	[0.0098-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
885	chr4	39365700	39365701	rs34471101	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	4p14		rs34471101-T	NR	5E-8		0.0128	[0.0083-0.0173] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
885	chr4	39365719	39365720	rs78773383	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	4p14	RFC1	rs78773383-G	0.5415	4E-13		0.02597567	[0.019-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
885	chr4	39365719	39365720	rs78773383	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	4p14	RFC1	rs78773383-G	0.5416	2E-12		0.02522975	[0.018-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
885	chr4	39366589	39366590	rs6844176	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	4p14		rs6844176-C	NR	1E-46		0.0287	[0.025-0.033] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
885	chr4	39366589	39366590	rs6844176	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	4p14		rs6844176-C	NR	6E-40		0.0265	[0.023-0.03] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
885	chr4	39366589	39366590	rs6844176	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	4p14	RFC1	rs6844176-C	0.455457	2E-26		0.023660462	[0.019-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
885	chr4	39366589	39366590	rs6844176	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4p14	NR	rs6844176-C	0.474512	4E-57				Affymetrix, Illumina [24246363] (imputed)	N
885	chr4	39366589	39366590	rs6844176	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	4p14	NR	rs6844176-C	0.456187	1E-45		0.025973	[0.022-0.03] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
885	chr4	39366589	39366590	rs6844176	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4p14	NR	rs6844176-C	0.475328	1E-42				Affymetrix, Illumina [20825802] (imputed)	N
885	chr4	39366589	39366590	rs6844176	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	4p14	NR	rs6844176-C	0.454996	2E-34		0.023761	[0.02-0.028] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
885	chr4	39366589	39366590	rs6844176	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	4p14		rs6844176-?	NR	5E-39				NR [~ 8900000] (imputed)	N
885	chr4	39371095	39371096	rs62310771	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Red blood cell count	108,794 Japanese ancestry individuals	NA	4p14	MIR1273H	rs62310771-?	NR	3E-10		0.02728	[0.019-0.036] unit increase novel	Illumina [6108953] (imputed)	N
885	chr4	39375328	39375329	rs62310772	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	4p14		rs62310772-?	NR	2E-12				NR [~ 8900000] (imputed)	N
885	chr4	39378457	39378458	rs6531714	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	4p14		rs6531714-T	NR	5E-19		0.0153	[0.012-0.019] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
885	chr4	39378457	39378458	rs6531714	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	4p14		rs6531714-T	0.472331	2E-10		0.014048012	[0.0097-0.0184] unit increase	Affymetrix [93095623] (imputed)	N
885	chr4	39378457	39378458	rs6531714	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	4p14		rs6531714-?	NR	3E-16				NR [~ 8900000] (imputed)	N
885	chr4	39390444	39390445	rs190438685	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (adult onset)	26,582 European ancestry cases, 300,671 European ancestry controls	16,297 European ancestry cases, 217,711 European ancestry controls	4p14	RFC1, KLB	rs190438685-T	0.014	1E-6		1.158	[1.1-1.22]	Affymetrix [9000000] (imputed)	N
885	chr4	39390444	39390445	rs190438685	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	4p14	RFC1, KLB	rs190438685-T	NR	3E-7		1.156	[1.1-1.21]	Affymetrix [9000000] (imputed)	N
885	chr4	39404871	39404872	rs13129401	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Problematic alcohol use	435,563 European ancestry individuals	NA	4p14	KLB	rs13129401-A	0.4532	5E-19		8.906	[NR] z score decrease	Affymetrix [14069427] (imputed)	N
885	chr4	39404871	39404872	rs13129401	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol use disorder	57,564 European ancestry cases, 256,395 European ancestry controls	NA	4p14	NR	rs13129401-A	0.4537	7E-12		6.851	[NR] unit decrease	Affymetrix [7003540] (imputed)	N
885	chr4	39406253	39406254	rs7682824	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week)	up to 941,280 European ancestry individuals	NA	4p14	NR	rs7682824-T	0.548	3E-8	(Conditioned on chr4:39418965, chr4:39414993)	0.008356086	[0.0054-0.0113] unit increase	NR [~ 10000000] (imputed)	N
885	chr4	39406369	39406370	rs7686419	28485404	Jorgenson E	2017-05-09	Mol Psychiatry	Genetic contributors to variation in alcohol consumption vary by race/ethnicity in a large multi-ethnic genome-wide association study.	Alcohol consumption (drinks per week)	23,104 European ancestry non-drinker individuals, 47,967 European ancestry drinker individuals, 2,673 Hispanic/Latino non-drinker individuals, 4,374 Hispanic/Latino drinker individuals, 3,288 East Asian ancestry non-drinker individuals, 2,746 East Asian ancestry drinker individuals, 1,165 African American non-drinkers individuals, 1,310 African American drinker individuals.	NA	4p14	KLB	rs7686419-A	0.47	9E-8	(EA, adjusted for lean body mass)	0.03	[0.05-0.02] drinks per week decrease	Affymetrix [NR] (imputed)	N
885	chr4	39406369	39406370	rs7686419	28485404	Jorgenson E	2017-05-09	Mol Psychiatry	Genetic contributors to variation in alcohol consumption vary by race/ethnicity in a large multi-ethnic genome-wide association study.	Alcohol consumption (drinks per week)	23,104 European ancestry non-drinker individuals, 47,967 European ancestry drinker individuals, 2,673 Hispanic/Latino non-drinker individuals, 4,374 Hispanic/Latino drinker individuals, 3,288 East Asian ancestry non-drinker individuals, 2,746 East Asian ancestry drinker individuals, 1,165 African American non-drinkers individuals, 1,310 African American drinker individuals.	NA	4p14	KLB	rs7686419-A	0.47	9E-11		0.04	[0.05-0.03] drinks per week decrease	Affymetrix [NR] (imputed)	N
885	chr4	39412948	39412957	rs770899487	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (computer use)	408,815 European ancestry individuals	NA	4p14	NR	rs770899487-?		9E-10		0.0139691	[0.0095-0.0184] unit increase	Affymetrix [19400418] (imputed)	N
885	chr4	39413649	39413650	rs58015370	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	4p14	KLB	rs58015370-A	0.6913	3E-9		0.1256	[0.084-0.167] mmHg decrease	Affymetrix [NR] (imputed)	N
885	chr4	39413779	39413780	rs28712821	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small HDL particles	115,082 European ancestry individuals	NA	4p14		rs28712821-G	0.394909	3E-8		0.0236365	[0.015-0.032] unit decrease	NR [11722792] (imputed)	N
885	chr4	39413779	39413780	rs28712821	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	4p14		rs28712821-A	NR	1E-17		0.0165	[0.013-0.02] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
885	chr4	39413779	39413780	rs28712821	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	4p14		rs28712821-A	NR	2E-20		0.0181	[0.014-0.022] unit decrease	Affymetrix, Illumina [20538307] (imputed)	N
885	chr4	39413779	39413780	rs28712821	33861876	Dao C	2021-04-16	Addiction	The Impact of Removing Former Drinkers from Genome-wide Association Studies of AUDIT-C.	Alcohol use disorder (consumption score)	5,135 European ancestry individuals inluding former drinkers, 126,375 European ancestry individuals excluding former drinkers	NR	4p14	KLB	rs28712821-?	NR	1E-19		0.098	[0.076-0.12] unit decrease	NR [7682250] (imputed)	N
885	chr4	39413779	39413780	rs28712821	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Alcohol consumption (drinks per week)	up to 357,854 European ancestry individuals	NA	4p14	KLB	rs28712821-A	0.608	2E-42		0.0355	[0.03-0.041] unit increase	Illumina [~ 250000] (imputed)	N
885	chr4	39413779	39413780	rs28712821	28937693	Clarke TK	2017-07-25	Mol Psychiatry	Genome-wide association study of alcohol consumption and genetic overlap with other health-related traits in UK Biobank (N=112 117).	Alcohol consumption	59,088 European ancestry females, 53,029 European ancestry males	NA	4p14	KLB	rs28712821-A	0.4	7E-11	(men)	0.029	[0.021-0.037] unit decrease	Affymetrix [12489781] (imputed)	N
885	chr4	39414992	39414993	rs11940694	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small HDL	115,082 European ancestry individuals	NA	4p14		rs11940694-A	0.394896	8E-10		0.0260347	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
885	chr4	39414992	39414993	rs11940694	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of monounsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	4p14		rs11940694-A	0.394904	1E-8		0.0232844	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
885	chr4	39414992	39414993	rs11940694	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small HDL	115,082 European ancestry individuals	NA	4p14		rs11940694-A	0.394896	8E-10		0.025879	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
885	chr4	39414992	39414993	rs11940694	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Monounsaturated fatty acid levels	115,006 European ancestry individuals	NA	4p14		rs11940694-A	0.394904	2E-9		0.0252725	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
885	chr4	39414992	39414993	rs11940694	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small HDL	115,082 European ancestry individuals	NA	4p14		rs11940694-A	0.394896	1E-9		0.0254216	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
885	chr4	39414992	39414993	rs11940694	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	4p14		rs11940694-G	NR	4E-9		0.0106	[0.0071-0.0141] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
885	chr4	39414992	39414993	rs11940694	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	4p14	MIR5591	rs11940694-A	0.395382	3E-23		0.00538675	[0.0043-0.0064] unit decrease	Affymetrix [13995440] (imputed)	N
885	chr4	39414992	39414993	rs11940694	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	4p14	NR	rs11940694-A	0.39	4E-8		0.0103	[0.0065-0.0141] unit decrease	NR [NR]	N
885	chr4	39414992	39414993	rs11940694	32393786	Meddens SFW	2020-05-11	Mol Psychiatry	Genomic analysis of diet composition finds novel loci and associations with health and lifestyle.	Relative protein intake	175,253 European ancestry individuals	93,179 European ancestry individuals	4p14	NR	rs11940694-?		1E-14		0.022	[0.016-0.028] unit increase	Affymetrix [NR]	N
885	chr4	39414992	39414993	rs11940694	31959922	Matoba N	2020-01-20	Nat Hum Behav	GWAS of 165,084 Japanese individuals identified nine loci associated with dietary habits.	Alcohol consumption (drinks per week)	58,610 Japanese ancestry individuals	NA	4p14	KLB	rs11940694-?	NR	4E-6		0.027	[0.015-0.039] unit decrease	Illumina [6108828] (imputed)	N
885	chr4	39414992	39414993	rs11940694	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	4p14	KLB	rs11940694-A	0.4643	2E-8		0.0173	[0.011-0.023] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
885	chr4	39414992	39414993	rs11940694	31358974	Evangelou E	2019-07-29	Nat Hum Behav	New alcohol-related genes suggest shared genetic mechanisms with neuropsychiatric disorders.	Alcohol consumption	480,842 European ancestry individuals	NA	4p14	KLB	rs11940694-A	0.3938	3E-68		0.0185	[0.016-0.021] unit decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
885	chr4	39414992	39414993	rs11940694	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	4p14	KLB	rs11940694-A	0.4654	3E-12		0.0048	[0.0034-0.0062] unit increase	Affymetrix, Illumina [8176554] (imputed)	N
885	chr4	39414992	39414993	rs11940694	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter alcoholic beverage consumption	336,448 European ancestry individuals	39,924 European ancestry individuals	4p14	KLB	rs11940694-G	0.6023	4E-33		0.0125	[0.011-0.014] unit increase	Affymetrix [~ 7740000] (imputed)	N
885	chr4	39414992	39414993	rs11940694	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Alcohol consumption (drinks per week)	414,343 European ancestry individuals	NA	4p14	KLB	rs11940694-A	0.3928	3E-41		0.030738968	[0.026-0.035] unit decrease	Affymetrix [11514936] (imputed)	N
885	chr4	39414992	39414993	rs11940694	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	4p14	NR	rs11940694-G	0.597	4E-64		0.0228615	[0.02-0.026] unit increase	NR [~ 9732723] (imputed)	N
885	chr4	39414992	39414993	rs11940694	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week)	up to 941,280 European ancestry individuals	NA	4p14	NR	rs11940694-G	0.597	3E-68		0.025949908	[0.023-0.029] unit increase	NR [~ 10000000] (imputed)	N
885	chr4	39414992	39414993	rs11940694	30336701	Sanchez-Roige S	2018-10-19	Am J Psychiatry	Genome-Wide Association Study Meta-Analysis of the Alcohol Use Disorders Identification Test (AUDIT) in Two Population-Based Cohorts.	Alcohol use disorder (total score)	141,932 European ancestry individuals	NA	4p14	KLB	rs11940694-A	NR	7E-21		9.38	[NR] z score decrease	NR [16213998]	N
885	chr4	39414992	39414993	rs11940694	30336701	Sanchez-Roige S	2018-10-19	Am J Psychiatry	Genome-Wide Association Study Meta-Analysis of the Alcohol Use Disorders Identification Test (AUDIT) in Two Population-Based Cohorts.	Alcohol use disorder (dependence and problematic use scores)	121,604 British ancestry individuals	NA	4p14	KLB	rs11940694-G	NR	1E-9		0.007	[NR] unit increase	NR [16213998]	N
885	chr4	39414992	39414993	rs11940694	30336701	Sanchez-Roige S	2018-10-19	Am J Psychiatry	Genome-Wide Association Study Meta-Analysis of the Alcohol Use Disorders Identification Test (AUDIT) in Two Population-Based Cohorts.	Alcohol use disorder (consumption score)	121,604 British ancestry individuals	NA	4p14	KLB	rs11940694-G	NR	5E-17		0.009	[0.007-0.011] unit increase	NR [16213998]	N
885	chr4	39414992	39414993	rs11940694	28937693	Clarke TK	2017-07-25	Mol Psychiatry	Genome-wide association study of alcohol consumption and genetic overlap with other health-related traits in UK Biobank (N=112 117).	Alcohol consumption in current drinkers	108,309 European ancestry individuals	NA	4p14	KLB	rs11940694-A	0.39	6E-18		0.027	[0.021-0.033] unit decrease	Affymetrix [12489781] (imputed)	N
885	chr4	39414992	39414993	rs11940694	28937693	Clarke TK	2017-07-25	Mol Psychiatry	Genome-wide association study of alcohol consumption and genetic overlap with other health-related traits in UK Biobank (N=112 117).	Alcohol consumption	59,088 European ancestry females, 53,029 European ancestry males	NA	4p14	KLB	rs11940694-A	0.39	9E-10	(women)	0.026	[0.018-0.034] unit decrease	Affymetrix [12489781] (imputed)	N
885	chr4	39414992	39414993	rs11940694	28937693	Clarke TK	2017-07-25	Mol Psychiatry	Genome-wide association study of alcohol consumption and genetic overlap with other health-related traits in UK Biobank (N=112 117).	Alcohol consumption	59,088 European ancestry females, 53,029 European ancestry males	NA	4p14	KLB	rs11940694-A	0.39	8E-19		0.027	[0.021-0.033] unit decrease	Affymetrix [12489781] (imputed)	N
885	chr4	39414992	39414993	rs11940694	28485404	Jorgenson E	2017-05-09	Mol Psychiatry	Genetic contributors to variation in alcohol consumption vary by race/ethnicity in a large multi-ethnic genome-wide association study.	Alcohol consumption (drinks per week)	23,104 European ancestry non-drinker individuals, 47,967 European ancestry drinker individuals, 2,673 Hispanic/Latino non-drinker individuals, 4,374 Hispanic/Latino drinker individuals, 3,288 East Asian ancestry non-drinker individuals, 2,746 East Asian ancestry drinker individuals, 1,165 African American non-drinkers individuals, 1,310 African American drinker individuals.	NA	4p14	KLB	rs11940694-A	0.42	1E-7	(EA)	0.035	unit decrease	Affymetrix [NR] (imputed)	N
885	chr4	39414992	39414993	rs11940694	27911795	Schumann G	2016-11-28	Proc Natl Acad Sci U S A	KLB is associated with alcohol drinking, and its gene product ?-Klotho is necessary for FGF21 regulation of alcohol preference.	Alcohol consumption	up to 70,460 European ancestry drinker individuals	up to 35,438 European ancestry drinker individuals	4p14	KLB	rs11940694-A	0.42	9E-12		0.0136	[0.0097-0.0175] unit decrease	Affymetrix, Illumina, Perlegen [at least 316407] (imputed)	N
885	chr4	39418964	39418965	rs35538052	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week)	up to 941,280 European ancestry individuals	NA	4p14	NR	rs35538052-A	0.379	1E-8	(Conditioned on chr4:39414993)	0.008524877	[0.0056-0.0115] unit decrease	NR [~ 10000000] (imputed)	N
885	chr4	39420980	39420981	rs12639940	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol consumption (drinks per week) (MTAG)	972,915 European ancestry individuals	NA	4p14	NR	rs12639940-G	0.379	2E-56		0.028283842	[0.025-0.032] unit decrease	Affymetrix [NR] (imputed)	N
885	chr4	39420980	39420981	rs12639940	30940813	Kranzler HR	2019-04-02	Nat Commun	Genome-wide association study of alcohol consumption and use disorder in 274,424 individuals from multiple populations.	Alcohol use disorder (consumption score)	200,680 European American individuals, 56,495 African American individuals, 14,112 Latino American individuals, 1,366 East Asian American individuals, 189 South Asian American individuals	NA	4p14	KLB	rs12639940-A	0.614	3E-9	(EA)	0.03295	[0.022-0.044] unit increase	Affymetrix [up to 12500000] (imputed)	N
885	chr4	39420980	39420981	rs12639940	30940813	Kranzler HR	2019-04-02	Nat Commun	Genome-wide association study of alcohol consumption and use disorder in 274,424 individuals from multiple populations.	Alcohol use disorder (consumption score)	200,680 European American individuals, 56,495 African American individuals, 14,112 Latino American individuals, 1,366 East Asian American individuals, 189 South Asian American individuals	NA	4p14	KLB	rs12639940-A	0.613	3E-9		5.93	NR z score increase	Affymetrix [up to 12500000] (imputed)	N
885	chr4	39420993	39420994	rs9991733	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	4p14	NR	rs9991733-G	NR	1E-9		0.0161	[0.011-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
885	chr4	39422241	39422242	rs13130794	31998841	Thompson A	2020-01-15	Sci Adv	Functional validity, role, and implications of heavy alcohol consumption genetic loci.	Alcohol consumption (heavy vs. light/non-drinkers)	21,967 British ancestry cases, 103,282 British ancestry controls	47,967 European ancestry individuals	4p14	KLB	rs13130794-T	0.632	6E-16		8.096	NR z score increase	Affymetrix [11141077] (imputed)	N
885	chr4	39422323	39422324	rs13125440	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Problematic alcohol use (MTAG)	972,915 European ancestry individuals	NA	4p14	NR	rs13125440-G	0.3813	2E-47		0.030801678	[0.027-0.035] unit decrease	Affymetrix [10613246] (imputed)	N
885	chr4	39423511	39423512	rs4975012	30336701	Sanchez-Roige S	2018-10-19	Am J Psychiatry	Genome-Wide Association Study Meta-Analysis of the Alcohol Use Disorders Identification Test (AUDIT) in Two Population-Based Cohorts.	Alcohol use disorder (total score)	141,932 European ancestry individuals	NA	4p14	KLB	rs4975012-A	NR	3E-9		5.94	[NR] z score increase	NR [16213998]	N
885	chr4	39426394	39426395	rs151010045	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Alcohol consumption (drinks per week)	414,343 European ancestry individuals	NA	4p14	KLB	rs151010045-T	0.9668	4E-9		0.0366548	[0.024-0.049] unit decrease	Affymetrix [11514936] (imputed)	N
885	chr4	39439718	39439719	rs4975016	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Alcohol consumption (drinks per week)	414,343 European ancestry individuals	NA	4p14	RPL9	rs4975016-T	0.1999	2E-10		0.017656706	[0.012-0.023] unit increase	Affymetrix [11514936] (imputed)	N
886	chr4	39462029	39462030	rs181099388	25763902	Draaken M	2015-03-12	PLoS Genet	Genome-wide association study and meta-analysis identify ISL1 as genome-wide significant susceptibility gene for bladder exstrophy.	Classic bladder exstrophy	208 European ancestry cases, 1,703 European ancestry controls	NA	4p14	NR	rs181099388-G	0.028	8E-6		2.84	[1.80-4.50]	Illumina [7261187] (imputed)	N
886	chr4	39486968	39486969	rs10025454	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cholelithiasis	26,122 European ancestry cases, 461,431 European ancestry controls, 9,305 East Asian ancestry cases, 168,253 East Asian ancestry controls	NA	4p14		rs10025454-A	NR	2E-8		0.0479	[0.031-0.065] unit decrease	Affymetrix, Illumina [25844936] (imputed)	N
886	chr4	39491520	39491521	rs2687965	33888516	Zheng T	2021-04-22	Gut	Genome-wide analysis of 944 133 individuals provides insights into the etiology of haemorrhoidal disease.	Haemorrhoidal disease	218,920 European ancestry cases, 725,213 European ancestry controls	NA	4p14	UGDH	rs2687965-?	0.4949	6E-9		0.98	[0.97-0.98]	Affymetrix, Illumina [8494288] (imputed)	N
886	chr4	39517864	39517865	rs56118664	28957384	Kim SK	2017-09-28	PLoS One	Two genetic loci associated with ankle injury.	Ankle injury	1,421 European ancestry cases, 154 Hispanic/Latino cases, 121 East Asian ancestry cases, 81,843 European ancestry controls, 8,406 Hispanic/Latino controls, 7,397 East Asian ancestry controls	NA	4p14	NR	rs56118664-G	NR	4E-6		1.8994		Affymetrix [8183964] (imputed)	N
886	chr4	39526614	39526615	rs114804393	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (severe respiratory symptoms vs population)	1,128 European ancestry cases, 679,531 European ancestry controls, 245 Hispanic or Latin American cases, 94,237 Hispanic or Latin American controls, 74 Black or African American cases, 22,383 Black or African American controls	NA	4p14		rs114804393-?	NR	7E-7		0.5691513	[0.35-0.79] unit decrease	Illumina [9906551] (imputed)	N
886	chr4	39526614	39526615	rs114804393	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid pneumonia vs population)	1,004 European ancestry cases, 680,354 European ancestry controls, 218 Hispanic or Latin American cases, 94,318 Hispanic or Latin American controls, 64 Black or African American cases, 22,412 Black or African American controls	NA	4p14		rs114804393-?	NR	3E-6		0.5643312	[0.33-0.8] unit decrease	Illumina [9901720] (imputed)	N
886	chr4	39529699	39529700	rs3755899	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	4p14	NR	rs3755899-G	0.08	2E-8	(AA)	1789.83	[1772.72-1806.94]	Illumina [905956]	N
886	chr4	39536522	39536523	rs150665541	33455090	Bing N	2021-01-17	Arthritis Rheumatol	Contribution of a European-Prevalent Variant near CD83 and an East Asian-Prevalent Variant near IL17RB to Herpes Zoster Risk in Tofacitinib Treatment: Results of Genome-Wide Association Study Meta-Analyses.	Response to tofacitinib treatment in psoriasis (herpes zoster)(time to event)	56 European ancestry cases, 1,543 European ancestry controls, 10 East Asian ancestry cases, 80 East Asian ancestry controls, 4 Hispanic cases, 245 Hispanic controls	NA	4p14	UGDH	rs150665541-?		2E-8	(EA)	4.86	[2.79-8.45]	Illumina [up to 8000000] (imputed)	N
886	chr4	39536522	39536523	rs150665541	33455090	Bing N	2021-01-17	Arthritis Rheumatol	Contribution of a European-Prevalent Variant near CD83 and an East Asian-Prevalent Variant near IL17RB to Herpes Zoster Risk in Tofacitinib Treatment: Results of Genome-Wide Association Study Meta-Analyses.	Response to tofacitinib treatment in psoriasis (herpes zoster)	56 European ancestry cases, 1,543 European ancestry controls, 10 East Asian ancestry cases, 80 East Asian ancestry controls, 4 Hispanic cases, 245 Hispanic controls	NA	4p14	UGDH	rs150665541-?		4E-6	(EA)	5.46	[2.88-10.3]	Illumina [up to 8000000] (imputed)	N
887	chr4	39607291	39607292	rs73240624	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	4p14		rs73240624-?	NR	7E-13				NR [~ 8900000] (imputed)	N
887	chr4	39613629	39613629	rs200624933	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mumps	31,227 European ancestry cases, 54,153 European ancestry controls	NA	4p14	NR	rs200624933-?	NR	9E-6		0.143	[0.08-0.206] unit decrease	Illumina [at least 560000] (imputed)	N
887	chr4	39619869	39619870	rs12500234	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal cancer	978 Austrian ancestry cases, 4,294 European ancestry controls	NA	4p14	Intergenic	rs12500234-?		4E-6		1.2956724	[NR]	Affymetrix [492217] (imputed)	N
887	chr4	39646630	39646631	rs12504746	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	4p14	SMIM14	rs12504746-C	0.807144	2E-9		0.0151583	[0.01-0.02] unit increase	Affymetrix [NR] (imputed)	N
887	chr4	39662816	39662817	rs146218421	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels	774 Chinese ancestry individuals	NA	4p14		rs146218421-?	NR	6E-6		0.3	[0.17-0.43] unit increase	Affymetrix [NR] (imputed)	N
887	chr4	39684216	39684217	rs7676961	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	4p14		rs7676961-C	NR	2E-11		0.0131	[0.0094-0.0168] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
887	chr4	39684216	39684217	rs7676961	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4p14	NR	rs7676961-C	0.539787	1E-13				Affymetrix, Illumina [24588908] (imputed)	N
887	chr4	39684216	39684217	rs7676961	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	4p14	NR	rs7676961-C	0.507285	6E-16		0.014867	[0.011-0.018] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
887	chr4	39684976	39684977	rs6857629	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	4p14	Intergenic	rs6857629-A	0.2514	5E-12	(MTAG)	0.0104	[0.0075-0.0133] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
887	chr4	39686331	39686332	rs6531735	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	4p14	NR	rs6531735-G	0.492544	1E-9		0.00454756	[0.0029-0.0062] unit increase	Affymetrix [16582909] (imputed)	N
887	chr4	39686331	39686332	rs6531735	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	4p14	NR	rs6531735-G	0.492492	1E-8		0.00636303	[0.0039-0.0088] unit increase	Affymetrix [16585854] (imputed)	N
887	chr4	39686331	39686332	rs6531735	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	4p14	NR	rs6531735-G	0.492544	1E-7		0.00465993	[0.0028-0.0065] unit increase	Affymetrix [16582965] (imputed)	N
887	chr4	39686331	39686332	rs6531735	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	4p14	NR	rs6531735-G	0.492492	1E-6		0.0064376	[0.0037-0.0092] unit increase	Affymetrix [16585866] (imputed)	N
887	chr4	39687837	39687838	rs6812533	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	4p14		rs6812533-T	0.7444	5E-11		0.0106	[0.0075-0.0137] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
887	chr4	39691824	39691826	rs200226143	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	4p14		rs200226143-A	0.492995	2E-11		0.015281022	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
887	chr4	39696765	39696766	rs767617	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	4p14		rs767617-T	NR	2E-9		0.0125	[0.0084-0.0166] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
887	chr4	39698737	39698738	rs3912392	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	4p14	UBE2K	rs3912392-A	0.507133	5E-11		0.0147953695	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
887	chr4	39699700	39699701	rs28450192	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	4p14		rs28450192-A	0.1854	3E-9	(conditional-joint)	0.011	[0.0075-0.0145] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
887	chr4	39700172	39700173	rs1055582	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	4p14		rs1055582-T	NR	3E-9		0.0126	[0.0085-0.0167] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
887	chr4	39700172	39700173	rs1055582	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	4p14	UBE2K	rs1055582-C	0.49477	3E-13		0.013948	[0.01-0.018] unit decrease	Affymetrix [NR] (imputed)	N
887	chr4	39700172	39700173	rs1055582	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	4p14	UBE2K	rs1055582-C	0.494865	3E-15		0.0154913	[0.012-0.019] unit decrease	Affymetrix [NR] (imputed)	N
888	chr4	39768399	39768400	rs111709089	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mumps	31,227 European ancestry cases, 54,153 European ancestry controls	NA	4p14	NR	rs111709089-?	NR	1E-6		0.1558	[0.092-0.219] unit decrease	Illumina [at least 560000] (imputed)	N
888	chr4	39785275	39785276	rs4263408	24535457	Chouraki V	2014-02-18	Mol Psychiatry	A genome-wide association meta-analysis of plasma A? peptides concentrations in the elderly.	Plasma amyloid beta peptide concentrations (ABx-40)	3,528 European ancestry individuals	NA	4p14	UBE2K	rs4263408-T	0.43	7E-6		0.09	[0.051-0.129] unit decrease	Illumina [2316178] (imputed)	N
888	chr4	39804615	39804616	rs113769228	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric bone mineral content (spine)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	4p14	NR	rs113769228-C	0.165	7E-6	(Males)	0.274518	[0.16-0.39] unit decrease	Illumina [~ 6600000] (imputed)	N
888	chr4	39807564	39807565	rs385753	34586716	Chen J	2021-09-29	Mol Genet Genomic Med	Heritability and genome-wide association study of blood pressure in Chinese adult twins.	Mean arterial pressure	137 Chinese ancestry twins	NA	4p14		rs385753-?	NR	3E-6				Illumina [7401356] (imputed)	N
888	chr4	39820976	39820977	rs167374	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	4p14	PDS5A	rs167374-G	0.548964	3E-10		0.014288911	[0.0098-0.0187] unit increase	Affymetrix [93095623] (imputed)	N
888	chr4	39830218	39830219	rs2292111	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4p14	NR	rs2292111-G	0.880168	1E-22				Affymetrix, Illumina [22063850] (imputed)	N
888	chr4	39830218	39830219	rs2292111	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	4p14	NR	rs2292111-G	0.879283	8E-25		0.029825	[0.024-0.036] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
888	chr4	39841155	39841156	rs177529	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	4p14	Intergenic	rs177529-T	0.6458	2E-10	(MTAG)	0.011	[0.0077-0.0143] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
889	chr4	39854211	39854212	rs7671295	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	4p14	Intergenic	rs7671295-T	0.6465	4E-8	(MTAG)	0.0102	[0.0065-0.0139] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
889	chr4	39854211	39854212	rs7671295	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	4p14	Intergenic	rs7671295-T	0.656	8E-9	(MTAG)	0.0139	[0.0092-0.0186] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
889	chr4	39949845	39949846	rs75827282	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	4p14	PDS5A	rs75827282-G	0.123645	7E-20		0.030922864	[0.024-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
889	chr4	39960225	39960226	rs142278384	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	4p14	PDS5A	rs142278384-C	NR	5E-10		0.0250597	[0.017-0.034] unit increase	Affymetrix [16832071] (imputed)	N
889	chr4	39973189	39973190	rs73229728	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	4p14		rs73229728-?	NR	1E-19				NR [~ 8900000] (imputed)	N
890	chr4	40030730	40030731	rs7693253	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter non-alcoholic beverage consumption	85,852 European ancestry individuals	39,924 European ancestry individuals	4p14	LOC344967	rs7693253-A	0.4426	2E-7		0.0085	[0.0054-0.0116] unit increase	Affymetrix [~ 7740000] (imputed)	N
890	chr4	40030730	40030731	rs7693253	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter beverage consumption	85,852 European ancestry individuals	39,924 European ancestry individuals	4p14	LOC344967	rs7693253-A	0.4426	2E-9		0.0097	[0.0066-0.0128] unit increase	Affymetrix [~ 7740000] (imputed)	N
890	chr4	40051063	40051064	rs794016	31564439	Fang H	2019-09-26	Am J Hum Genet	Harmonizing Genetic Ancestry and Self-identified Race/Ethnicity in Genome-wide Association Studies.	Height	up to 248,507 non-Hispanic white individuals, up to 68,155 non-Hispanic black individuals, up to 25,847 Hispanic individuals, up to 3,054 Asian ancestry individuals	NA	4p14	NR	rs794016-C	NR	8E-10	(EA)	0.08	NR unit decrease	Affymetrix [723305]	N
890	chr4	40086751	40086752	rs28519512	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	4p14	NR	rs28519512-?	NR	3E-6		0.0081748	[0.0048-0.0116] unit decrease	Affymetrix [805426] (imputed)	N
891	chr4	40121561	40121562	rs794001	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	4p14	RHOH	rs794001-?	NR	1E-6	(thiamine)	0.19242458	[0.12-0.27] unit decrease	Affymetrix [at least 2500000] (imputed)	N
891	chr4	40123398	40123399	rs80192073	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Epithelial ovarian cancer	1,112 White British ancestry cases, 147,944 White British ancestry controls	NA	4p14		rs80192073-?	NR	1E-6		72.5348	[70.79-74.28]	NR [666300]	N
891	chr4	40158487	40158488	rs139756456	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	4p14	NR	rs139756456-?	NR	9E-6		0.2184	[0.12-0.31] unit increase	Illumina [at least 560000] (imputed)	N
891	chr4	40159616	40159617	rs7656730	22550155	Edelstein LC	2012-05-01	Circulation	Human genome-wide association and mouse knockout approaches identify platelet supervillin as an inhibitor of thrombus formation under shear stress.	Platelet thrombus formation	125 European ancestry individuals, 116 African American individuals	NA	4p14	N4BP2	rs7656730-?	NR	1E-6	(AA)	0.025637	[0.015-0.036] unit increase	Illumina [at least 620901]	N
891	chr4	40171223	40171224	rs6821957	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	4p14		rs6821957-?	NR	3E-26				NR [~ 8900000] (imputed)	N
891	chr4	40192048	40192049	rs7698247	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	4p14	RHOH	rs7698247-G	NR	6E-7		1.0615711	NR	Affymetrix, Illumina [8278136] (imputed)	N
892	chr4	40242490	40242490	rs148332376	31219150	Ekenberg C	2019-06-13	J Infect Dis	Single nucleotide polymorphisms in HLA alleles are associated with HIV-1 viral load in demographically diverse, ART-naive participants from the START trial.	Pre-treatment viral load in HIV-1 infection	1,398 European ancestry individuals, 572 Black individuals, 418 Hispanic individuals, 13 Asian ancestry individuals, 39 individuals	NA	4p14	RHOH	rs148332376-T	0.07	7E-16		0.4	[0.3-0.5] unit decrease	Affymetrix [339439]	N
892	chr4	40251467	40251468	rs10020341	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	4p14	RHOH	rs10020341-G	0.979333582882892	8E-7	(G_unclassified_K_Bacteria_HB)	0.864904	[0.52-1.21] unit increase	Illumina [7711310] (imputed)	N
892	chr4	40291915	40291916	rs9683415	32581359	Saevarsdottir S	2020-06-24	Nature	FLT3 stop mutation increases FLT3 ligand level and risk of autoimmune thyroid disease.	Autoimmune thyroid disease	30,234 European ancestry cases, 724,172 European ancestry controls	NA	4p14	NR	rs9683415-A	0.331	4E-10		1.06	[NR]	Affymetrix, Illumina [42900000] (imputed)	N
892	chr4	40291915	40291916	rs9683415	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Autoimmune traits	approximately 459,000 European ancestry individuals	NA	4p14		rs9683415-?	NR	2E-9				NR [~ 8900000] (imputed)	N
892	chr4	40301623	40301624	rs73142294	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	4p14		rs73142294-T	0.249153	6E-11		0.016688064	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
892	chr4	40301623	40301624	rs73142294	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	4p14	NR	rs73142294-T	0.247603	8E-12		0.015158	[0.011-0.019] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
892	chr4	40303632	40303633	rs6832151	21841780	Chu X	2011-08-14	Nat Genet	A genome-wide association study identifies two new risk loci for Graves' disease.	Graves' disease	1,468 Chinese ancestry cases, 1,490 Chinese ancestry controls	3,994 Chinese ancestry cases, 3,510 Chinese ancestry controls	4p14	RHOH, CHRNA9	rs6832151-G	0.35	1E-13		1.24	[1.17-1.31]	Illumina [486049]	N
892	chr4	40304746	40304747	rs12498917	29346644	Yan Q	2018-01-15	Hum Mol Genet	Genome-wide Analysis of Disease Progression in Age-related Macular Degeneration.	Disease progression in age-related macular degeneration (adjusted for baseline)	1,105 progressed eyes and 3,912 non-progressed eyes from 2,721 European ancestry individuals	NA	4p14	LOC101060498	rs12498917-T	0.06	4E-7		1.63		Illumina [8974355] (imputed)	N
892	chr4	40307532	40307533	rs4444866	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4p14	NR	rs4444866-T	0.236536	5E-10				Affymetrix, Illumina [23472807] (imputed)	N
892	chr4	40307532	40307533	rs4444866	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	4p14		rs4444866-?	NR	1E-11				NR [~ 8900000] (imputed)	N
892	chr4	40307563	40307564	rs13136820	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	4p14		rs13136820-T	NR	3E-14		0.0709	[0.053-0.089] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
892	chr4	40307563	40307564	rs13136820	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Graves' disease	2,809 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	4p14		rs13136820-T	0.71857554	3E-9		0.18386686	[0.12-0.24] unit decrease	Illumina [13429311] (imputed)	N
892	chr4	40307563	40307564	rs13136820	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Graves' disease	1,678 European ancestry cases, 456,942 European ancestry controls, 2,809 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	4p14		rs13136820-T	NR	2E-8		0.1361	[0.088-0.184] unit decrease	Affymetrix, Illumina [25841587] (imputed)	N
892	chr4	40307563	40307564	rs13136820	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	4p14	RHOH	rs13136820-C	NR	8E-10		1.0775	NR	Affymetrix, Illumina [8278136] (imputed)	N
892	chr4	40307563	40307564	rs13136820	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	4p14	AC195454.1	rs13136820-C	0.319992	9E-13		0.07065508	[0.051-0.09] unit increase	Affymetrix [7288503] (imputed)	N
892	chr4	40307563	40307564	rs13136820	27723757	Jin Y	2016-11-01	Nat Genet	Genome-wide association studies of autoimmune vitiligo identify 23 new risk loci and highlight key pathways and regulatory variants.	Vitiligo	2,853 European ancestry cases and 37,405 European ancestry controls	1,827 European ancestry cases and 2,181 European ancestry controls	4p14	LOC101060498	rs13136820-?	NR	4E-11		1.182	NR	Illumina [8966411] (imputed)	N
892	chr4	40307587	40307587	rs113284964	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	4p14	LINC02265	rs113284964-G	0.371	1E-16		1.134	[1.1-1.16]	Illumina [11270530] (imputed)	N
892	chr4	40307587	40307587	rs113284964	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Graves' disease	2,176 Japanese ancestry cases, 210,277 Japanese ancestry controls	NA	4p14		rs113284964-GCTTC	0.720185463	8E-9		0.81656873	[0.762321679-0.874676061]	Illumina [8919992] (imputed)	N
892	chr4	40326895	40326896	rs6840327	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	4p14	NR	rs6840327-T	0.482014	1E-10		0.011907	[0.0083-0.0155] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
892	chr4	40330573	40330574	rs62302171	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	4p14	NR	rs62302171-?	NR	3E-9				Illumina [7760689] (imputed)	N
892	chr4	40335662	40335663	rs6816902	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	4p14	NR	rs6816902-G	0.525091	1E-10		0.011892	[0.0083-0.0155] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
892	chr4	40335662	40335663	rs6816902	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	4p14	NR	rs6816902-G	0.525029	1E-10		0.011906	[0.0083-0.0155] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
892	chr4	40348833	40348834	rs114219703	30920136	Stapleton CP	2019-02-27	Am J Transplant	The impact of donor and recipient common clinical and genetic variation on estimated glomerular filtration rate in a European renal transplant population.	Estimated glomerular filtration rate change in renal transplantation (donor effect)	Up to 2,298 European ancestry individuals	NA	4p14	CHRNA9	rs114219703-T	NR	4E-6				Illumina [up to 3936786] (imputed)	N
893	chr4	40381209	40381210	rs6447650	25133637	Scannell Bryan M	2014-08-18	PLoS One	Genome-wide association studies and heritability estimates of body mass index related phenotypes in Bangladeshi adults.	Body mass index (change over time)	2,643 Bangladeshi ancestry females, 2,340 Bangladeshi ancestry males	NA	4p14	CHRNA9, RBM47	rs6447650-T	0.044	2E-7	(males)	0.416	[0.26-0.57] unit increase	Illumina [1208102] (imputed)	N
893	chr4	40388734	40388735	rs113221462	34737425	Mansour Aly D	2021-11-04	Nat Genet	Genome-wide association analyses highlight etiological differences underlying newly defined subtypes of diabetes.	Severe insulin-resistant type 2 diabetes	1,130 Scandinavian ancestry cases, 2,744 Scandinavian ancestry controls	NA	4p14	APBB2	rs113221462-T	0.226849	7E-6		1.351	[1.185 - 1.541]	Illumina [5397362] (imputed)	N
893	chr4	40418669	40418670	rs203273	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	4p14	NR	rs203273-C	0.343941	5E-12		0.0139005	[0.01-0.0178] unit decrease	Affymetrix [15000001]	N
893	chr4	40421138	40421139	rs278939	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	4p14		rs278939-T	NR	1E-10		0.011	[0.0077-0.0143] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
893	chr4	40428009	40428010	rs278981	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	95,119 East Asian ancestry individuals	NA	4p14		rs278981-C	0.572341	2E-8		0.0248919	[0.016-0.034] unit increase	Illumina [13471440] (imputed)	N
893	chr4	40428009	40428010	rs278981	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	4p14		rs278981-C	NR	8E-16		0.0184	[0.014-0.023] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
893	chr4	40428009	40428010	rs278981	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	4p14	RBM47	rs278981-T	0.242196	2E-13		0.018860545	[0.014-0.024] unit increase	Affymetrix [93095623] (imputed)	N
893	chr4	40428009	40428010	rs278981	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4p14	NR	rs278981-C	0.729187	1E-17				Affymetrix, Illumina [23467995] (imputed)	N
893	chr4	40428009	40428010	rs278981	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	4p14	NR	rs278981-C	0.758003	5E-15		0.017259	[0.013-0.022] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
893	chr4	40428009	40428010	rs278981	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	4p14	RBM47	rs278981-T	0.241847	4E-10		0.0149629	[0.01-0.02] unit decrease	Affymetrix [NR] (imputed)	N
893	chr4	40428009	40428010	rs278981	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	4p14	RBM47	rs278981-T	0.2521	1E-9		0.0127	[0.0086-0.0168] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
893	chr4	40428090	40428091	rs35529250	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	4p14		rs35529250-T	NR	8E-18		0.1268	[0.098-0.156] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
893	chr4	40428090	40428091	rs35529250	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Urate levels	437,354 European ancestry individuals	NA	4p14		rs35529250-?	NR	3E-12		0.0805118	[0.057-0.105] unit increase	NR [9800000] (imputed)	N
893	chr4	40428090	40428091	rs35529250	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Serum urea levels	437,580 European ancestry individuals	NA	4p14		rs35529250-?	NR	4E-21		0.126517	[0.1-0.153] unit increase	NR [9800000] (imputed)	N
893	chr4	40428090	40428091	rs35529250	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Cystatin C levels	437,846 European ancestry individuals	NA	4p14		rs35529250-?	NR	1E-9		0.0750819	[0.05-0.1] unit increase	NR [9800000] (imputed)	N
893	chr4	40428090	40428091	rs35529250	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Creatinine levels	437,660 European ancestry individuals	NA	4p14		rs35529250-?	NR	2E-11		0.0885101	[0.063-0.114] unit increase	NR [9800000] (imputed)	N
893	chr4	40428090	40428091	rs35529250	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	4p14	NR	rs35529250-T	NR	4E-17		0.1316	[0.1-0.16] unit increase	Affymetrix [9000000] (imputed)	N
893	chr4	40428090	40428091	rs35529250	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Systolic blood pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	4p14	RBM47	rs35529250-T	0.0097	2E-8		1.5511	mmHg decrease	Illumina [242296]	N
893	chr4	40428090	40428091	rs35529250	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Hypertension	up to 83,330 European ancestry cases, up to 73,760 European ancestry controls, up to 9,322 South Asian ancestry cases, up to 16,861 South Asian ancestry controls	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	4p14	RBM47	rs35529250-T	0.0068	8E-7		4.938	z score decrease	Illumina [242296]	N
893	chr4	40428090	40428091	rs35529250	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Diastolic blood pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	4p14	RBM47	rs35529250-T	0.0086	8E-8		0.9009	[0.57-1.23] mmHg decrease	Illumina [242296]	N
893	chr4	40435389	40435390	rs3821983	28322283	Chibnik LB	2017-03-21	Mol Psychiatry	Susceptibility to neurofibrillary tangles: role of the PTPRD locus and limited pleiotropy with other neuropathologies.	Microscopic brain infarct	253 European ancestry cases, 656 European ancestry controls	369 individuals	4p14	NR	rs3821983-C	0.7	5E-6	(EA)			Affymetrix, Illumina [NR] (imputed)	N
893	chr4	40470035	40470036	rs73231764	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental longevity (mother's age at death)	52,776 middle-aged British individuals	NA	4p14	NR	rs73231764-?	NR	6E-6		0.03228	[0.018-0.046] unit decrease	Affymetrix [9658292] (imputed)	N
894	chr4	40556608	40556609	rs76169119	32117412	Boua PR	2020-02-07	Front Genet	Novel and Known Gene-Smoking Interactions With cIMT Identified as Potential Drivers for Atherosclerosis Risk in West-African Populations of the AWI-Gen Study.	Carotid intima media thickness x smoking interaction	465 West African ancestry male smokers, 1,311 West African ancestry male non-smokers	NA	4p14	RBM47	rs76169119-C	NR	3E-6		4.658	NR z score increase	Illumina [7839440] (imputed)	N
894	chr4	40565425	40565426	rs6841258	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	4p14		rs6841258-T	NR	2E-34		0.0361	[0.03-0.042] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
894	chr4	40565425	40565426	rs6841258	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	4p14	NR	rs6841258-T	0.1678	9E-36		0.003692	[0.0031-0.0043] unit decrease	Affymetrix [NR] (imputed)	N
894	chr4	40565425	40565426	rs6841258	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	4p14	RBM47	rs6841258-T	0.179	1E-7		0.0390349	[0.025-0.054] unit increase	Illumina [13520550] (imputed)	N
894	chr4	40565468	40565469	rs6841429	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	4p14	NR	rs6841429-A	NR	3E-9		0.0195	[0.013-0.026] unit increase	Affymetrix [9000000] (imputed)	N
894	chr4	40579109	40579110	rs77236363	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	4p14	NR	rs77236363-A	NR	6E-11		0.0251	[0.018-0.033] unit decrease	Affymetrix [9000000] (imputed)	N
895	chr4	40687233	40687234	rs6835691	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	4p14		rs6835691-C	NR	6E-12		0.0223	[0.016-0.029] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
895	chr4	40695445	40695446	rs1115838	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	4p14	FLJ20273	rs1115838-?	NR	6E-6	(deoxycholate)	0.30578074	[0.17-0.44] unit increase	Affymetrix [at least 2500000] (imputed)	N
895	chr4	40712142	40712143	rs76714234	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H measurement	252 European ancestry individuals	NA	4p14		rs76714234-T	NR	6E-6		4.3598	[2.51-6.21] unit decrease	Illumina [NR] (imputed)	N
895	chr4	40713574	40713574	rs138489947	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	4p14		rs138489947-AT	0.387581	6E-10		0.014167214	[0.0097-0.0187] unit increase	Affymetrix [93095623] (imputed)	N
895	chr4	40724814	40724834	rs144801418	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	4p14		rs144801418-G	NR	1E-8		0.0163	[0.011-0.022] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
897	chr4	40973526	40973527	rs4466078	23259602	Wang X	2012-12-21	BMC Oral Health	Genome-wide association scan of dental caries in the permanent dentition.	Dental caries	1,483 European ancestry comparatively younger individuals, 5,960 European ancestry comparatively older individuals	NA	4p14	APBB2	rs4466078-?	NR	8E-6	(Comparatively Younger)			Affymetrix, Illumina [~ 1400000] (imputed)	N
897	chr4	40987299	40987299	rs34177316	27622933	Li QS	2016-09-13	Transl Psychiatry	Analysis of 23andMe antidepressant efficacy survey data: implication of circadian rhythm and neuroplasticity in bupropion response.	Response to citalopram or escitalopram in depression	2,963 European ancestry responder cases, 2,005 European ancestry non-responder cases	NA	4p14	APBB2	rs34177316-?		6E-7		1.355	[1.203-1.528]	Illumina [~ 12000000] (imputed)	N
897	chr4	40997257	40997258	rs59892895	31688885	Genetics of Glaucoma in People of African Descent (GGLAD) Consortium	2019-11-01	JAMA	Association of Genetic Variants With Primary Open-Angle Glaucoma Among Individuals With African Ancestry.	Glaucoma (primary open-angle)	694 African American cases, 1,590 Sub-Saharan African cases, 596 African American controls, 1,485 Sub-Saharan African controls	6,937 African ancestry cases, 14,917 African ancestry controls	4p14	APBB2	rs59892895-C	NR	4E-13		1.19	[1.14-1.25]	Illumina [6734161] (imputed)	N
898	chr4	41043869	41043870	rs12501370	29109912	Rawofi L	2017-11-02	PeerJ	Genome-wide association study of pigmentary traits (skin and iris color) in individuals of East Asian ancestry.	Iris color (L* coordinate)	377 East Asian ancestry individuals	NA	4p14	APBB2	rs12501370-C	0.555848	7E-6		0.332256	[0.19-0.47] unit decrease	Illumina [at least 520076] (imputed)	N
898	chr4	41056715	41056716	rs114070671	24143882	Gelernter J	2013-10-19	Biol Psychiatry	Genome-wide association study of opioid dependence: multiple associations mapped to calcium and potassium pathways.	Opioid sensitivity	1,383 European ancestry cases, 996 European ancestry controls, 683 African American cases, 2,635 African American controls	2,116 European ancestry individuals, 4,496 African American individuals	4p14	APBB2	rs114070671-?	0.08	1E-7	(AA)			Illumina [988306]	N
898	chr4	41109116	41109117	rs777356022	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	4p14	APBB2	rs777356022-A	0.9985	9E-6		1.0773	[0.6-1.55] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
899	chr4	41195476	41195477	rs28654472	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	4p14		rs28654472-T	0.14	1E-11		6.81	z score increase	Affymetrix [9061022] (imputed)	N
899	chr4	41199820	41199821	rs13137594	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA		Intergenic	rs13137594-A	0.8798	5E-10		0.0186	[0.013-0.024] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
899	chr4	41217245	41217246	rs13115636	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	4p13	Intergenic	rs13115636-T	0.1213	8E-9	(MTAG)	0.0158	[0.011-0.021] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
899	chr4	41230617	41230618	rs66475765	33381925	Buchanan VL	2020-12-30	Pediatr Obes	Genome-wide association study identifying novel variant for fasting insulin and allelic heterogeneity in known glycemic loci in Chilean adolescents: The Santiago Longitudinal Study.	Fasting glucose	543 Chilean individuals	NA	4p13	UCHL1-AS1	rs66475765-T	0.03	4E-6		8.212	[4.74-11.68] unit decrease	Illumina [NR] (imputed)	N
899	chr4	41254861	41254862	rs7693827	31211820	Deek R	2019-06-18	PLoS One	Genome-wide association analysis of HDL-C in a Lebanese cohort.	High density lipoprotein cholesterol levels	2,700 Lebanese ancestry individuals	NA	4p13	USHL1AS1	rs7693827-T	NR	4E-6	(adjusted)	0.0258	[0.0368-0.0148] unit decrease	Illumina [307238]	N
899	chr4	41284710	41284711	rs4861096	19734545	Need AC	2009-09-04	Hum Mol Genet	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA	4p13	UCHL1	rs4861096-?	0.244	9E-6	(PAL6)			Illumina [475971]	N
900	chr4	41359623	41359624	rs11728170	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	4p13	UCHL1	rs11728170-?	NR	4E-6	(TAG 56:2)	0.26310888	[0.15-0.38] unit decrease	Affymetrix [at least 2500000] (imputed)	N
900	chr4	41371697	41371698	rs73232185	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	4p13		rs73232185-?	NR	1E-8				NR [~ 8900000] (imputed)	N
900	chr4	41406509	41406510	rs13118239	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Deep white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	4p13	LIMCH1	rs13118239-A	0.7743	1E-6		0.0308	[0.018-0.043] unit increase	Affymetrix, Illumina [NR] (imputed)	N
901	chr4	41454319	41454320	rs12641813	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	4p13	LIMCH1	rs12641813-?	NR	5E-9		0.8324	[0.54-1.12] unit increase	Affymetrix [11100000] (imputed)	N
901	chr4	41471036	41471037	rs77313297	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-2 receptor antagonist levels	3,677 Finnish ancestry individuals	NA	4p13	NR	rs77313297-C		6E-6		0.5403	[0.31-0.77] SD units decrease	NR [10700000] (imputed)	N
901	chr4	41490454	41490455	rs7696430	25350695	Postmus I	2014-10-28	Nat Commun	Pharmacogenetic meta-analysis of genome-wide association studies of LDL cholesterol response to statins.	Response to statins (LDL cholesterol change)	18,596 European ancestry individuals	23,279 European ancestry individuals	4p13	LIMCH1	rs7696430-A	0.157	8E-8		0.014	[0.0081-0.0199] unit increase	Affymetrix, Illumina, Perlegen [at least 2500000] (imputed)	N
902	chr4	41554363	41554364	rs10007810	25199915	Broer L	2014-09-08	J Gerontol A Biol Sci Med Sci	GWAS of longevity in CHARGE consortium confirms APOE and FOXO3 candidacy.	Longevity (90 years and older)	6,036 European ancestry cases, 3,757 European ancestry controls	NA	4p13	LIMCH1	rs10007810-A	0.23	9E-6		1.2	1.11-1.30	Affymetrix, Illumina [2500000] (imputed)	N
902	chr4	41561961	41561962	rs28603236	31809533	Han X	2019-09-06	Hum Mol Genet	Genome-wide association analysis of 95 549 individuals identifies novel loci and genes influencing optic disc morphology.	Optic disc size	67,040 British ancestry individuals	28,509 European ancestry individuals	4p13	LIMCH1	rs28603236-A	0.85	4E-8		0.01	unit increase	Affymetrix [8928767] (imputed)	N
902	chr4	41639515	41639516	rs4345220	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine with aura	5,118 European ancestry cases, 74,239 European ancestry controls	NA	4p13	intergenic	rs4345220-?	0.56	2E-6		1.15	[1.09-1.2]	Affymetrix, Illumina [~ 2300000] (imputed)	N
902	chr4	41649102	41649103	rs9291207	34242216	Ray D	2021-07-09	PLoS Genet	Pleiotropy method reveals genetic overlap between orofacial clefts at multiple novel loci from GWAS of multi-ethnic trios.	Cleft lip with or without cleft palate or cleft palate (pleiotropy)	300 Asian ancestry cleft lip trios, 299 European ancestry cleft lip trios, 89 Latin American cleft lip trios, 6 cleft lip trios, 875 Asian ancestry cleft lip with cleft palate trios, 679 European ancestry cleft lip with cleft palate trios, 508 Latin American cleft lip with cleft palate trios, 15 cleft lip with cleft palate trios, 273 Asian ancestry cleft palate trios, 296 European ancestry cleft palate trios, 28 Latin American cleft palate trios, 14 cleft palate trios	NA	4p13		rs9291207-C	0.3	5E-7				Illumina [6761961] (imputed)	N
902	chr4	41658882	41658883	rs79296534	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in non-diabetics	152,624 European ancestry individuals, 36,369 African American individuals	NA	4p13	LIMCH1	rs79296534-C	0.109	3E-8		0.486	[0.31-0.66] unit decrease	Affymetrix [NR] (imputed)	N
902	chr4	41658882	41658883	rs79296534	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	4p13	LIMCH1	rs79296534-C	0.11	5E-6		0.0021	[0.00092-0.00328] unit decrease	Affymetrix [NR] (imputed)	N
903	chr4	41687886	41687887	rs187163024	34620984	Skuladottir AT	2021-10-07	Commun Biol	A genome-wide meta-analysis uncovers six sequence variants conferring risk of vertigo.	Vertigo	48,072 European ancestry cases, 894,541 European ancestry controls	NA	4p13		rs187163024-A	NR	6E-6		0.7195		Affymetrix, Illumina [62056310] (imputed)	N
903	chr4	41690409	41690410	rs16853485	31324189	Kim W	2019-07-19	Respir Res	DSP variants may be associated with longitudinal change in quantitative emphysema.	Emphysema annual change measurement in smokers (adjusted lung density)	4,427 European ancestry individuals, 1,158 African American individuals	NA	4p13	LIMCH1	rs16853485-C	0.826	6E-6	(EA)	0.12	[0.069-0.171] unit decrease	Illumina [NR] (imputed)	N
903	chr4	41744498	41744499	rs73139112	34624637	Zainul Abidin FN	2021-09-21	Neuroimage Clin	Glucose hypometabolism in the Auditory Pathway in Age Related Hearing Loss in the ADNI cohort.	Age related hearing loss-related regional glucose metabolism (Cochlear nucleus)	228 European ancestry cases, 587 European ancestry controls	NA	4p13		rs73139112-?	NR	5E-6		0.316	[0.18-0.45] unit decrease	Illumina [5082878] (imputed)	N
903	chr4	41746459	41746460	rs6826373	27702942	Tang CS	2016-10-03	Hum Mol Genet	Trans-ethnic meta-analysis of genome-wide association studies for Hirschsprung disease.	Hirschsprung disease	212 European ancestry cases, 173 Chinese ancestry cases, 122 Korean ancestry cases, 202 European ancestry controls, 615 Chinese ancestry controls, 374 Korean ancestry controls	NA	4p13	PHOX2B	rs6826373-C	NR	6E-6	(East Asian)	1.7503225	[0.448054680198781-0.728505575484536]	Affymetrix, Illumina [at least 6512116] (imputed)	N
903	chr4	41747898	41747899	rs17885864	26911590	Mullin BH	2016-02-25	BMC Genomics	Genome-wide association study using family-based cohorts identifies the WLS and CCDC170/ESR1 loci as associated with bone mineral density.	Bone mineral density (femoral neck)	1,042 Northern European ancestry individuals	5,654 Northern European ancestry individuals	4p13	PHOX2B	rs17885864-T	0.03	1E-7		0.38	[0.24-0.52] g/cm2 decrease	Illumina [NR] (imputed)	N
903	chr4	41793146	41793147	rs6851412	34624637	Zainul Abidin FN	2021-09-21	Neuroimage Clin	Glucose hypometabolism in the Auditory Pathway in Age Related Hearing Loss in the ADNI cohort.	Age related hearing loss-related regional glucose metabolism (Cochlear nucleus)	228 European ancestry cases, 587 European ancestry controls	NA	4p13		rs6851412-?	NR	1E-6		0.243	[0.15-0.34] unit decrease	Illumina [5082878] (imputed)	N
903	chr4	41802428	41802429	rs527577433	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	4p13	NR	rs527577433-?	NR	7E-7		0.013623	[0.0082-0.019] unit decrease	Affymetrix [805426] (imputed)	N
905	chr4	41956412	41956413	rs1507086	29324852	Primes G	2018-01-11	PLoS One	Real-life helping behaviours in North America: A genome-wide association approach.	Helping behaviour (self reported)	10,713 European ancestry, African American and unknown ancestry individuals	NA	4p13	TMEM33, DCAF4L1, SLC30A9, ATP1B1P1, BEND4	rs1507086-?	NR	3E-6		0.0802	[0.046-0.114] unit decrease	Illumina [1224134] (imputed)	N
905	chr4	42047777	42047778	rs34215985	31926635	Coleman JRI	2019-11-01	Biol Psychiatry	The Genetics of the Mood Disorder Spectrum: Genome-wide Association Analyses of More Than 185,000 Cases and 439,000 Controls.	Bipolar disorder or major depressive disorder	164,933 European ancestry major depressive disorder cases, 20,352 European ancestry bipolar disorder cases, 439,741 European ancestry controls	NA	4p13	NR	rs34215985-G	NR	2E-10		1.0309278		NR [NR] (imputed)	N
905	chr4	42047777	42047778	rs34215985	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	4p13	SLC30A9, DCAF4L1	rs34215985-?		3E-10				NR [6786993] (imputed)	N
905	chr4	42047777	42047778	rs34215985	29700475	Wray NR	2018-04-26	Nat Genet	Genome-wide association analyses identify 44 risk variants and refine the genetic architecture of major depression.	Depression	135,458 European ancestry cases, 344,901 European ancestry controls	NA	4p13	SLC30A9, LINC00682, DCAF4L1	rs34215985-G	0.76	3E-9		1.0416667	[1.03-1.05]	NR [9622763] (imputed)	N
905	chr4	42049966	42049967	rs146277137	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		SLC30A9	rs146277137-?	NR	4E-8	(male)	3.15933	[NR] unit increase	Affymetrix [NR] (imputed)	N
906	chr4	42109546	42109547	rs6447129	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	4p13		rs6447129-?	NR	1E-7				NR [~ 8900000] (imputed)	N
906	chr4	42110352	42110353	rs34937911	30718901	Howard DM	2019-02-04	Nat Neurosci	Genome-wide meta-analysis of depression identifies 102 independent variants and highlights the importance of the prefrontal brain regions.	Depression	118,811 European ancestry cases, 327,427 European ancestry controls, 127,552 cases, 233,763 controls	414,055 European ancestry cases, 892,299 European ancestry controls	4p13	NR	rs34937911-T	0.8838	5E-13		1.025	[1.018-1.032]	NR [8098588] (imputed)	N
906	chr4	42117558	42117559	rs16854020	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol consumption (drinks per week) (MTAG)	972,915 European ancestry individuals	NA	4p13	NR	rs16854020-A	0.127	4E-10		0.016957017	[0.012-0.022] unit increase	Affymetrix [NR] (imputed)	N
906	chr4	42117558	42117559	rs16854020	31358974	Evangelou E	2019-07-29	Nat Hum Behav	New alcohol-related genes suggest shared genetic mechanisms with neuropsychiatric disorders.	Alcohol consumption	480,842 European ancestry individuals	NA	4p13	BEND4	rs16854020-A	0.13	3E-11		0.01	[0.0061-0.0139] unit increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
906	chr4	42117558	42117559	rs16854020	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Alcohol consumption (drinks per week)	up to 357,854 European ancestry individuals	NA	4p13	BEND4	rs16854020-A	0.13	1E-9		0.023	[0.016-0.03] unit increase	Illumina [~ 250000] (imputed)	N
906	chr4	42120508	42120509	rs2880666	29324852	Primes G	2018-01-11	PLoS One	Real-life helping behaviours in North America: A genome-wide association approach.	Helping behaviour (self reported)	10,713 European ancestry, African American and unknown ancestry individuals	NA	4p13	TMEM33, DCAF4L1, SLC30A9, ATP1B1P1, BEND4	rs2880666-?	NR	5E-7		0.0863	[0.053-0.12] unit decrease	Illumina [1224134] (imputed)	N
906	chr4	42123514	42123515	rs35741556	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	4p13		rs35741556-?	NR	9E-8				NR [~ 8900000] (imputed)	N
906	chr4	42123727	42123728	rs16854048	30804558	Grove J	2019-02-25	Nat Genet	Identification of common genetic risk variants for autism spectrum disorder.	Autism and major depressive disorder (MTAG)	18,381 European ancestry autism cases, 27,969 European ancestry controls, 111,902 major depression cases, 312,113 controls	NA	4p13		rs16854048-A	0.858	1E-8		0.069	[0.045-0.093] unit increase	Illumina [NR] (imputed)	N
906	chr4	42123891	42123892	rs16854051	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	4p13	TMEM33	rs16854051-T	0.213166	4E-8		5.51	z score decrease	NR [10847151] (imputed)	N
906	chr4	42134065	42134066	rs6447132	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms (MTAG)	955,012 individuals	NA	4p13	NR	rs6447132-?		1E-8				NR [520857]	N
906	chr4	42139131	42139132	rs9291211	32099098	Polimanti R	2020-02-26	Mol Psychiatry	Leveraging genome-wide data to investigate differences between opioid use vs. opioid dependence in 41,176 individuals from the Psychiatric Genomics Consortium.	Opioid exposure	1,297 African ancestry cases, 2,876 European ancestry cases, 7,063 African ancestry controls, 25,437 European ancestry controls	NA	4p13	BEND4, SLC30A9	rs9291211-A	0.7817	7E-8	(EA)	5.387	z score decrease	NR [up to 9065342] (imputed)	N
906	chr4	42139131	42139132	rs9291211	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	4p13	NR	rs9291211-A	NR	2E-8		5.602	z score increase	Affymetrix [10847151] (imputed)	N
906	chr4	42150212	42150213	rs6856819	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	4p13	NR	rs6856819-G	0.235	2E-9		0.00936338	[0.0063-0.0124] unit increase	NR [~ 9732723] (imputed)	N
906	chr4	42151305	42151306	rs4501255	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week)	up to 941,280 European ancestry individuals	NA	4p13	NR	rs4501255-G	0.235	5E-10		0.010693415	[0.0073-0.0141] unit increase	NR [~ 10000000] (imputed)	N
906	chr4	42178775	42178776	rs34587185	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	4p13		rs34587185-C	NR	3E-6		7.5944	[4.5-10.69] unit increase	Illumina [NR] (imputed)	N
906	chr4	42195267	42195268	rs116358000	30718321	Sanchez-Roige S	2019-02-04	J Neurosci	Genome-wide association studies of impulsive personality traits (BIS-11 and UPPSP) and drug experimentation in up to 22,861 adult research participants identify loci in the CACNA1I and CADM2 genes.	Impulsivity (attentional)	21,876 European ancestry individuals	NA	4p13	BEND4, SHISA3	rs116358000-T	0.9902	4E-6		0.245	[0.348-0.141] unit decrease	Illumina [11455070] (imputed)	N
906	chr4	42200203	42200204	rs33998475	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	4p13	BEND4	rs33998475-?		4E-9				Affymetrix, Illumina [NR] (imputed)	N
907	chr4	42222161	42222162	rs112586322	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Systolic blood pressure (baseline)	5,304 African American individuals, 13,137 European ancestry individuals, 1,317 Hispanic individuals, 1,439 admixed individuals, 703 Chinese ancestry individuals	6,500 African American individuals, 2,451 European ancestry individuals, 2,869 Hispanic individuals	4p13	NR	rs112586322-T	0.8905	4E-7		1.9088	[1.17-2.65] mmHg decrease	Affymetrix, Illumina [NR] (imputed)	N
907	chr4	42222161	42222162	rs112586322	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Systolic blood pressure (baseline)	5,304 African American individuals	6,500 African American individuals	4p13	NR	rs112586322-T	0.8838	1E-6		1.9165	[1.15-2.68] mmHg decrease	Affymetrix, Illumina [NR] (imputed)	N
907	chr4	42222913	42222914	rs7693560	31926482	Shen H	2020-01-11	Neuropsychopharmacology	Polygenic prediction and GWAS of depression, PTSD, and suicidal ideation/self-harm in a Peruvian cohort.	Suicidal or self-harm ideation	522 Peruvian cases, 2,882 Peruvian controls	NA	4p13	NR	rs7693560-A		3E-6		1.398	[NR]	NR [NR]	N
907	chr4	42227496	42227497	rs17530621	32378780	Park B	2020-05-07	Cancer Sci	Genome-Wide Association Study of Genetic Variants Related to Anthracycline-Induced Cardiotoxicity in Early Breast Cancer.	Anthracycline-induced cardiotoxicity in early breast cancer	42 Korean ancestry cases, 215 Korean ancestry controls	NA	4p13	BEND4, ATP8A1, SHISA3	rs17530621-T	0.107	4E-6				NR [346946]	N
907	chr4	42231109	42231110	rs7664918	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	4p13	NR	rs7664918-?	NR	5E-13				Affymetrix [NR]	N
907	chr4	42269479	42269480	rs1487614	26912274	Zeng Y	2016-02-25	Sci Rep	Novel loci and pathways significantly associated with longevity.	Longevity	2,178 Han Chinese ancestry centenarian cases, 2,299 Han Chinese ancestry middle-age controls	NA	4p13	BEND4	rs1487614-C	NR	3E-7		1.3966479	[NR]	Illumina [5595657] (imputed)	N
908	chr4	42359209	42359210	rs74464322	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	4p13		rs74464322-G	NR	3E-9		0.0145	[0.0098-0.0192] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
908	chr4	42365465	42365466	rs11722932	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	4p13	NR	rs11722932-C	NR	2E-9		0.0179	[0.012-0.024] unit increase	Affymetrix [9000000] (imputed)	N
908	chr4	42365465	42365466	rs11722932	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	4p13	NR	rs11722932-C	NR	5E-9		0.0176	[0.012-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
908	chr4	42452220	42452221	rs6447160	24869959	Jacobs LC	2014-08-01	JAMA Dermatol	Intrinsic and extrinsic risk factors for sagging eyelids.	Upper eyelid sagging severity	6,631 European ancestry individuals	NA	4p13	ATP8A1	rs6447160-C	0.06	2E-6	(additive)	0.15	[NR] unit decrease	Illumina [at least 2149245] (imputed)	N
908	chr4	42453252	42453253	rs10517025	22610502	Kennedy RB	2012-05-19	Hum Genet	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IFN-alpha)	Up to 512 European ancestry individuals, up to 199 African American individuals	NA	4p13	ATP8A1	rs10517025-A		2E-7	(AA)			Illumina [NR]	N
909	chr4	42539269	42539270	rs6855873	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Snoring	359,916 European ancestry individuals	NA	4p13	NR	rs6855873-T	0.2411	2E-8		1.03	[1.02-1.04]	Affymetrix, Illumina [10862568] (imputed)	N
909	chr4	42555810	42555811	rs17447640	28060188	Hamet P	2017-01-16	J Hypertens	PROX1 gene CC genotype as a major determinant of early onset of type 2 diabetes in slavic study participants from Action in Diabetes and Vascular Disease: Preterax and Diamicron MR Controlled Evaluation study.	Type 2 diabetes (age of onset)	2,307 Celtic ancestry individuals, 1,102 Slavic ancestry individuals	NA	4p13	ATP8A1, SHISA3, GRXCR1	rs17447640-?	NR	2E-6				Affymetrix [5045527] (imputed)	N
910	chr4	42629037	42629038	rs16854624	24869959	Jacobs LC	2014-08-01	JAMA Dermatol	Intrinsic and extrinsic risk factors for sagging eyelids.	Upper eyelid sagging severity	6,631 European ancestry individuals	NA	4p13	ATP8A1	rs16854624-T	0.07	9E-7	(additive)	0.14	[NR] unit decrease	Illumina [at least 2149245] (imputed)	N
910	chr4	42664507	42664508	rs28424875	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	FSC-A on myeloid Dendritic Cell	2,872 Sardinian (founder/genetic isolate) ancestry individuals	NA	4p13		rs28424875-C	0.06279	4E-8		0.3193	[0.21-0.43] unit decrease	Illumina [17926605] (imputed)	N
910	chr4	42680486	42680487	rs34079764	34074324	Wan JY	2021-06-01	Diabetol Metab Syndr	Genome-wide association analysis of metabolic syndrome quantitative traits in the GENNID multiethnic family study.	Systolic blood pressure	281 African American individuals from 73 families, 516 European ancestry individuals from 75 families, 125 Japanese American individuals from 15 families, 598 Mexican American individuals from 96 families	NA	4p13	ATP8A1	rs34079764-G	0.04	1E-7	(Hispanic/Latino)	0.7	[0.43-0.97] unit decrease	Illumina [up to 13042663] (imputed)	N
910	chr4	42721250	42721251	rs2612528	33669428	Franco LAM	2021-02-16	Int J Mol Sci	Pharmacogenomic Profile and Adverse Drug Reactions in a Prospective Therapeutic Cohort of Chagas Disease Patients Treated with Benznidazole.	Adverse response to benznidazole in Chagas disease	61 Hispanic/Latino or unknown ancestry cases, 29 Hispanic/Latino or unknown ancestry controls	NA	4p13	NR	rs2612528-T	NR	1E-6				Affymetrix [at least 811691] (imputed)	N
911	chr4	42800455	42800456	rs2575515	26503814	Hardin M	2016-10-27	Pharmacogenomics J	A genome-wide analysis of the response to inhaled ?2-agonists in chronic obstructive pulmonary disease.	Response to bronchodilator in chronic obstructive pulmonary disease (change in FEV1)	5,766 European ancestry cases, 811 African American cases	NA	4p13	GRXCR1	rs2575515-T	0.47	8E-7	(BDRBASE, AA)	3.525	[2.13-4.92] unit increase	Illumina [NR] (imputed)	N
911	chr4	42823278	42823279	rs4861039	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	4p13	NR	rs4861039-T	0.389	8E-6	(IFNAR2_of_CD4p_T)			Illumina [5084123] (imputed)	N
911	chr4	42825861	42825862	rs10470752	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	4p13	ATP8A1, GRXCR1	rs10470752-?	0.75	2E-6	(Turkish)	1.754386	[1.39-2.22]	Illumina [up to 547389]	N
911	chr4	42857572	42857573	rs10004231	26305897	Iyengar SK	2015-08-25	PLoS Genet	Genome-Wide Association and Trans-ethnic Meta-Analysis for Advanced Diabetic Kidney Disease: Family Investigation of Nephropathy and Diabetes (FIND).	Diabetic kidney disease	1,564 African American cases, 369  African American diabetic controls, 1,288 African American non-diabetic controls, 538 American Indian ancestry cases, 319 American Indian ancestry diabetic controls, 342 European ancestry cases, 404 European ancestry diabetic controls, 779 Mexican ancestry cases, 594 Mexican ancestry diabetic controls	950 African American cases, 50 African American diabetic controls, 1,887 African American non-diabetic controls, 471 American Indian ancestry cases, 340 American Indian ancestry diabetic controls, 486 American Indian ancestry non-diabetic controls, 582 European ancestry ancestry cases, 205 European ancestry diabetic controls, 2,568 European ancestry non-diabetic controls	4p13	NR	rs10004231-?	0.78	8E-6	(Mexican, recessive )	5.882353		Affymetrix [NR]	N
912	chr4	42864695	42864696	rs6850606	25338677	Kariuki SN	2014-10-23	Genes Immun	Genetic analysis of the pathogenic molecular sub-phenotype interferon-alpha identifies multiple novel loci involved in systemic lupus erythematosus.	Interferon alpha levels in systemic lupus erythematosus	88 European ancestry high interferon alpha cases, 322 European ancestry low interferon alpha cases	715 European ancestry cases, 450 African American cases	4p13	GRXCR1, ATP8A1	rs6850606-?	NR	2E-6	(EA)	1.5625	[1.20-2.00]	Illumina [291943]	N
912	chr4	42869172	42869173	rs4599447	33226468	Foss-Skiftesvik J	2020-11-23	Childs Nerv Syst	Genome-wide association study across pediatric central nervous system tumors implicates shared predisposition and points to 1q25.2 (PAPPA2) and 11p12 (LRRC4C) as novel candidate susceptibility loci.	Pediatric central nervous system tumors (early onset)(pleiotropy)	326 European ancestry cases, 4,320 European ancestry controls	NA	4p13	NR	rs4599447-?	NR	6E-6		1.87	1.42-2.45	Illumina [959859] (imputed)	N
912	chr4	42870368	42870369	rs10033259	33226468	Foss-Skiftesvik J	2020-11-23	Childs Nerv Syst	Genome-wide association study across pediatric central nervous system tumors implicates shared predisposition and points to 1q25.2 (PAPPA2) and 11p12 (LRRC4C) as novel candidate susceptibility loci.	Pediatric central nervous system tumors (pleiotropy)	944 European ancestry cases, 4,320 European ancestry controls	NA	4p13	NR	rs10033259-?	NR	5E-6		1.38	1.2-1.59	Illumina [959859] (imputed)	N
912	chr4	42891291	42891292	rs55766652	33831438	Williams JE	2021-04-05	Genomics	Key genetic variants associated with variation of milk oligosaccharides from diverse human populations.	Human milk oligosaccharide concentration (lacto-N-fucopentaose III) in non-secretors	90 European, Sub-Saharan African, Hispanic or unknown ancestry individuals	NA	4p13		rs55766652-?	NR	5E-10				Illumina [1128286]	N
912	chr4	42922702	42922703	rs73240021	32641180	Steffens DC	2020-07-09	Int Psychogeriatr	Genome-wide screen to identify genetic loci associated with cognitive decline in late-life depression.	Cognitive decline in depression	222 European ancestry older individuals	NA	4p13		rs73240021-?		1E-6				Illumina [3730665] (imputed)	N
913	chr4	43050375	43050376	rs28401743	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4p13	NR	rs28401743-A	0.01045	2E-8	(ACSM2B)	1.383	NR unit increase	Illumina [1671387] (imputed)	N
913	chr4	43052185	43052186	rs9997524	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	4p13	GRXCR1	rs9997524-C	0.0050	7E-6	(Head circumference )	0.02	[NR] cm increase	Illumina [899892]	N
913	chr4	43106475	43106478	rs768448715	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	4p13	RP11-395F4.1	rs768448715-T	0.001	8E-6		1.589	[0.89-2.29] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
914	chr4	43125019	43125020	rs1436487	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	4p13	NR	rs1436487-?	NR	4E-6				Affymetrix [NR]	N
914	chr4	43197961	43197962	rs13108021	30621171	Coltell O	2019-01-04	Nutrients	Genome-Wide Association Study (GWAS) on Bilirubin Concentrations in Subjects with Metabolic Syndrome: Sex-Specific GWAS Analysis and Gene-Diet Interactions in a Mediterranean Population.	Serum bilirubin levels x Mediterranean diet adherence interaction in metabolic syndrome	257 European ancestry individuals with low adherence to Mediterranean diet, 161 European ancestry individuals with high adherence to Mediterranean diet	NA	4p13	intergenic	rs13108021-A	0.228	3E-6				Illumina [622468]	N
914	chr4	43203384	43203385	rs79193072	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4p13	NR	rs79193072-A	0.02265	2E-8	(HP)	3.353	NR unit increase	Illumina [1671387] (imputed)	N
914	chr4	43203384	43203385	rs79193072	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4p13	NR	rs79193072-A	0.02265	1E-11	(EMILIN2)	0.1132	NR unit increase	Illumina [1671387] (imputed)	N
914	chr4	43213563	43213564	rs75790006	28081215	Pardo LM	2017-01-12	PLoS One	Genome-Wide Association Studies of Multiple Keratinocyte Cancers.	Multiple keratinocyte cancers	2,106 European ancestry multiple keratinocyte cancer cases, 2,061 European ancestry single keratinocyte cancer cases, 135 European and unknown ancestry multiple keratinocyte cancer cases, 761 European and unknown ancestry single keratinocyte cancer cases	NA	4p13	RP11-395F4.1	rs75790006-T	NR	1E-6		4.836	NR z-score increase	Affymetrix, Illumina [up to 9001799] (imputed)	N
915	chr4	43257131	43257132	rs113133843	29855537	Hirata T	2018-05-31	Sci Rep	Japanese GWAS identifies variants for bust-size, dysmenorrhea, and menstrual fever that are eQTLs for relevant protein-coding or long non-coding RNAs.	Vaginal discharge (smell)	367 Japanese ancestry female cases, 5,367 Japanese ancestry female controls	392 Japanese ancestry female cases, 5,222 Japanese ancestry female controls	4p13	NR	rs113133843-C	0.234163189	4E-6		0.2733042	[0.16-0.39] unit increase	Affymetrix [536506]	N
915	chr4	43268197	43268198	rs150561571	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4p13	NR	rs150561571-T	0.01394	3E-9	(AMBP)	0.03333	NR unit increase	Illumina [1671387] (imputed)	N
915	chr4	43320506	43320507	rs2006970	23319000	Luykx JJ	2013-01-15	Mol Psychiatry	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (5-HIAA/ MHPG Ratio)	up to 398 European ancestry individuals	NA	4p13	intergenic	rs2006970-C		9E-6		0.2674	unit decrease	Illumina [5767231] (imputed)	N
915	chr4	43365591	43365592	rs16855942	35047858	Polikowsky HG	2021-12-02	HGG Adv	Population-based genetic effects for developmental stuttering.	Developmental stuttering	250 African ancestry cases, 1,910 African ancestry controls, 160 Hispanic ancestry cases, 1,186 Hispanic ancestry controls, 42 East Asian ancestry cases, 113 East Asian ancestry controls, 1,565 European ancestry cases, 10,434 European ancestry controls, 44 South Asian ancestry cases, 143 South Asian ancestry controls, 4 Native American ancestry cases, 32 Native American ancestry controls, 44 Asian ancestry cases, 404 Asian ancestry controls, 21 cases, 109 controls	NA	4p13		rs16855942-A	0.3616	3E-6		4.685	z score decrease	Illumina [7275796] (imputed)	N
917	chr4	43518637	43518638	rs2347052	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	4p13	NR	rs2347052-?	NR	1E-7				Affymetrix [NR]	N
917	chr4	43537599	43537600	rs13130255	22216198	Athanasiadis G	2011-12-28	PLoS One	A genome-wide association study of the Protein C anticoagulant pathway.	Anticoagulant levels	397 European ancestry individuals from 21 families	NA	4p13	KCTD8	rs13130255-?	NR	3E-6	(funcPS)			Illumina [283437]	N
917	chr4	43581924	43581925	rs191130939	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Subjective well-being	298,420 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	4p13	NR	rs191130939-T	0.9904	7E-6		0.07512772	[0.042-0.108] unit decrease	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
917	chr4	43638195	43638196	rs78340493	30487263	Pollack S	2018-11-28	Diabetes	Multiethnic Genome-wide Association Study of Diabetic Retinopathy using Liability Threshold Modeling of Duration of Diabetes and Glycemic Control.	Proliferative diabetic retinopathy (vs NPDR and no DR)	398 European ancestry cases, 2,848 European ancestry controls, 1,097 African American cases, 1,514 African American controls	918 East Asian ancestry cases, 1,167 East Asian ancestry controls, 2,038 European ancestry cases, 6,783 European ancestry controls, 232 Hispanic cases, 2,194 Hispanic controls	4p13	NR	rs78340493-?	NR	3E-7	(AA)	1.66	[NR]	Affymetrix, Illumina [NR] (imputed)	N
919	chr4	43787478	43787479	rs13109974	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	4p13	Intergenic	rs13109974-?	NR	3E-8		1.669	[NR]	Affymetrix [492217] (imputed)	N
919	chr4	43795650	43795651	rs6447296	34241534	Lu Y	2021-07-09	Circ Genom Precis Med	Multiethnic Genome-wide Association Study of Subclinical Atherosclerosis in Individuals with Type 2 Diabetes.	Carotid artery intima-media thickness in type 2 diabetes	3,608 European ancestry individuals, 838 African American individuals	NA	4p13		rs6447296-A	0.13	1E-6		0.03	[0.01-0.05] unit increase	Affymetrix, Illumina [19600000] (imputed)	N
919	chr4	43806037	43806038	rs78626585	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4p13	NR	rs78626585-A	0.01916	7E-9	(NARS)	0.04813	NR unit increase	Illumina [1671387] (imputed)	N
919	chr4	43806037	43806038	rs78626585	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4p13	NR	rs78626585-A	0.01916	2E-9	(TGM2)	1.565	NR unit increase	Illumina [1671387] (imputed)	N
919	chr4	43811153	43811154	rs75580275	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4p13	NR	rs75580275-A	0.02091	4E-9	(TGM2)	1.479	NR unit increase	Illumina [1671387] (imputed)	N
919	chr4	43812834	43812835	rs2613155	30145303	Kimbrel NA	2018-07-17	Psychiatry Res	A genome-wide association study of suicide attempts and suicidal ideation in U.S. military veterans.	Suicidal ideation	79 European ancestry cases, 59 cases, 654 European ancestry controls, 779 controls	NA	4p13	Intergenic	rs2613155-G	NR	1E-6		2.76		Illumina [2711511] (imputed)	N
919	chr4	43813340	43813341	rs2715662	30145303	Kimbrel NA	2018-07-17	Psychiatry Res	A genome-wide association study of suicide attempts and suicidal ideation in U.S. military veterans.	Suicidal ideation	79 European ancestry cases, 59 cases, 654 European ancestry controls, 779 controls	NA	4p13	Intergenic	rs2715662-T	NR	4E-6		2.72		Illumina [2711511] (imputed)	N
919	chr4	43818067	43818068	rs2678763	30145303	Kimbrel NA	2018-07-17	Psychiatry Res	A genome-wide association study of suicide attempts and suicidal ideation in U.S. military veterans.	Suicidal ideation	79 European ancestry cases, 59 cases, 654 European ancestry controls, 779 controls	NA	4p13	Intergenic	rs2678763-G	NR	2E-6		2.74		Illumina [2711511] (imputed)	N
919	chr4	43819625	43819626	rs13151415	30145303	Kimbrel NA	2018-07-17	Psychiatry Res	A genome-wide association study of suicide attempts and suicidal ideation in U.S. military veterans.	Suicidal ideation	79 European ancestry cases, 59 cases, 654 European ancestry controls, 779 controls	NA	4p13	Intergenic	rs13151415-G	NR	2E-6		2.62		Illumina [2711511] (imputed)	N
919	chr4	43821789	43821790	rs2722152	30145303	Kimbrel NA	2018-07-17	Psychiatry Res	A genome-wide association study of suicide attempts and suicidal ideation in U.S. military veterans.	Suicidal ideation	79 European ancestry cases, 59 cases, 654 European ancestry controls, 779 controls	NA	4p13	Intergenic	rs2722152-A	NR	2E-6		2.72		Illumina [2711511] (imputed)	N
919	chr4	43831379	43831380	rs2613152	30145303	Kimbrel NA	2018-07-17	Psychiatry Res	A genome-wide association study of suicide attempts and suicidal ideation in U.S. military veterans.	Suicidal ideation	79 European ancestry cases, 59 cases, 654 European ancestry controls, 779 controls	NA	4p13	Intergenic	rs2613152-C	NR	2E-6		2.77		Illumina [2711511] (imputed)	N
919	chr4	43832580	43832581	rs2715654	30145303	Kimbrel NA	2018-07-17	Psychiatry Res	A genome-wide association study of suicide attempts and suicidal ideation in U.S. military veterans.	Suicidal ideation	79 European ancestry cases, 59 cases, 654 European ancestry controls, 779 controls	NA	4p13	Intergenic	rs2715654-G	NR	3E-6		2.7		Illumina [2711511] (imputed)	N
919	chr4	43832887	43832888	rs2715653	30145303	Kimbrel NA	2018-07-17	Psychiatry Res	A genome-wide association study of suicide attempts and suicidal ideation in U.S. military veterans.	Suicidal ideation	79 European ancestry cases, 59 cases, 654 European ancestry controls, 779 controls	NA	4p13	Intergenic	rs2715653-G	NR	3E-6		2.7		Illumina [2711511] (imputed)	N
919	chr4	43835827	43835828	rs2715652	30145303	Kimbrel NA	2018-07-17	Psychiatry Res	A genome-wide association study of suicide attempts and suicidal ideation in U.S. military veterans.	Suicidal ideation	79 European ancestry cases, 59 cases, 654 European ancestry controls, 779 controls	NA	4p13	Intergenic	rs2715652-A	NR	2E-6		2.71		Illumina [2711511] (imputed)	N
919	chr4	43837573	43837574	rs2613151	30145303	Kimbrel NA	2018-07-17	Psychiatry Res	A genome-wide association study of suicide attempts and suicidal ideation in U.S. military veterans.	Suicidal ideation	79 European ancestry cases, 59 cases, 654 European ancestry controls, 779 controls	NA	4p13	Intergenic	rs2613151-C	NR	3E-6		2.7		Illumina [2711511] (imputed)	N
919	chr4	43839592	43839593	rs2715651	30145303	Kimbrel NA	2018-07-17	Psychiatry Res	A genome-wide association study of suicide attempts and suicidal ideation in U.S. military veterans.	Suicidal ideation	79 European ancestry cases, 59 cases, 654 European ancestry controls, 779 controls	NA	4p13	Intergenic	rs2715651-C	NR	4E-7		2.86		Illumina [2711511] (imputed)	N
919	chr4	43840500	43840501	rs2613150	30145303	Kimbrel NA	2018-07-17	Psychiatry Res	A genome-wide association study of suicide attempts and suicidal ideation in U.S. military veterans.	Suicidal ideation	79 European ancestry cases, 59 cases, 654 European ancestry controls, 779 controls	NA	4p13	Intergenic	rs2613150-A	NR	2E-6		2.1		Illumina [2711511] (imputed)	N
919	chr4	43840852	43840853	rs2613149	30145303	Kimbrel NA	2018-07-17	Psychiatry Res	A genome-wide association study of suicide attempts and suicidal ideation in U.S. military veterans.	Suicidal ideation	79 European ancestry cases, 59 cases, 654 European ancestry controls, 779 controls	NA	4p13	Intergenic	rs2613149-A	NR	4E-7		2.86		Illumina [2711511] (imputed)	N
919	chr4	43840952	43840953	rs2715650	30145303	Kimbrel NA	2018-07-17	Psychiatry Res	A genome-wide association study of suicide attempts and suicidal ideation in U.S. military veterans.	Suicidal ideation	79 European ancestry cases, 59 cases, 654 European ancestry controls, 779 controls	NA	4p13	Intergenic	rs2715650-G	NR	2E-6		2.1		Illumina [2711511] (imputed)	N
919	chr4	43847560	43847561	rs2715640	30145303	Kimbrel NA	2018-07-17	Psychiatry Res	A genome-wide association study of suicide attempts and suicidal ideation in U.S. military veterans.	Suicidal ideation	79 European ancestry cases, 59 cases, 654 European ancestry controls, 779 controls	NA	4p13	Intergenic	rs2715640-A	NR	1E-6		2.75		Illumina [2711511] (imputed)	N
919	chr4	43848423	43848424	rs2613142	30145303	Kimbrel NA	2018-07-17	Psychiatry Res	A genome-wide association study of suicide attempts and suicidal ideation in U.S. military veterans.	Suicidal ideation	79 European ancestry cases, 59 cases, 654 European ancestry controls, 779 controls	NA	4p13	Intergenic	rs2613142-A	NR	2E-7		2.92		Illumina [2711511] (imputed)	N
919	chr4	43849364	43849365	rs2613143	30145303	Kimbrel NA	2018-07-17	Psychiatry Res	A genome-wide association study of suicide attempts and suicidal ideation in U.S. military veterans.	Suicidal ideation	79 European ancestry cases, 59 cases, 654 European ancestry controls, 779 controls	NA	4p13	Intergenic	rs2613143-C	NR	8E-6		2.21		Illumina [2711511] (imputed)	N
919	chr4	43849996	43849997	rs1841397	30145303	Kimbrel NA	2018-07-17	Psychiatry Res	A genome-wide association study of suicide attempts and suicidal ideation in U.S. military veterans.	Suicidal ideation	79 European ancestry cases, 59 cases, 654 European ancestry controls, 779 controls	NA	4p13	Intergenic	rs1841397-T	NR	3E-6		2.7		Illumina [2711511] (imputed)	N
919	chr4	43851091	43851092	rs13146780	25778476	Jun G	2015-03-17	Mol Psychiatry	A novel Alzheimer disease locus located near the gene encoding tau protein.	Alzheimer's disease in APOE e4- carriers	7,184 cases, 26,968 controls	718 European ancestry cases, 1,699 European ancestry controls	4p13	PGBD3P4, KCTD8	rs13146780-C	0.05	3E-6		1.23	[1.13-1.34]	NR [NR]	N
919	chr4	43851917	43851918	rs1460607	30145303	Kimbrel NA	2018-07-17	Psychiatry Res	A genome-wide association study of suicide attempts and suicidal ideation in U.S. military veterans.	Suicidal ideation	79 European ancestry cases, 59 cases, 654 European ancestry controls, 779 controls	NA	4p13	Intergenic	rs1460607-C	NR	3E-6		2.7		Illumina [2711511] (imputed)	N
919	chr4	43852156	43852157	rs2722149	30145303	Kimbrel NA	2018-07-17	Psychiatry Res	A genome-wide association study of suicide attempts and suicidal ideation in U.S. military veterans.	Suicidal ideation	79 European ancestry cases, 59 cases, 654 European ancestry controls, 779 controls	NA	4p13	Intergenic	rs2722149-G	NR	4E-7		2.86		Illumina [2711511] (imputed)	N
919	chr4	43853510	43853511	rs1460608	30145303	Kimbrel NA	2018-07-17	Psychiatry Res	A genome-wide association study of suicide attempts and suicidal ideation in U.S. military veterans.	Suicidal ideation	79 European ancestry cases, 59 cases, 654 European ancestry controls, 779 controls	NA	4p13	Intergenic	rs1460608-G	NR	4E-7		2.86		Illumina [2711511] (imputed)	N
919	chr4	43890439	43890440	rs148386737	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	4p13	NR	rs148386737-?	NR	2E-6	(Native Hawaiian)	1.2238	[NR] unit increase	Illumina [up to 11892802] (imputed)	N
919	chr4	43906555	43906556	rs78718518	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4p13	NR	rs78718518-C	0.02787	6E-9	(TGM2)	1.281	NR unit increase	Illumina [1671387] (imputed)	N
922	chr4	44206021	44206022	rs983363	32439431	Simard M	2020-05-19	J Allergy Clin Immunol	Polygenic risk score for atopic dermatitis in the Canadian population.	Atopic dermatitis (moderate to severe)	222 South East Asian ancestry, East Asian ancestry, South Asian ancestry, African American or Afro-Caribbean, European ancestry, Greater Middle Eastern (Middle Eastern, North African or Persian) cases, 2,466 Greater Middle Eastern (Middle Eastern, North African or Persian), Hispanic or Latin American, NR moderate to severe atopic dermatitis cases, 2,466 South East Asian ancestry, East Asian ancestry, South Asian ancestry, African American or Afro-Caribbean, European ancestry, Greater Middle Eastern (Middle Eastern, North African or Persian) cases, 2,466 Greater Middle Eastern (Middle Eastern, North African or Persian), Hispanic or Latin American, NR controls without moderate to severe atopic dermatitis	NA	4p13		rs983363-A	NR	2E-8	(additive)	1.126	[0.732-1.521] unit increase	Illumina [5894709] (imputed)	N
922	chr4	44212164	44212165	rs17641529	22952603	Hart AB	2012-08-28	PLoS One	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 10 individuals	NA	4p13	KCTD8	rs17641529-?	NR	9E-6	(SF7)			Affymetrix [5476100] (imputed)	N
923	chr4	44431493	44431494	rs6447335	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	4p13	NR	rs6447335-G	0.250906	1E-8		0.0135205	[0.0089-0.0182] unit decrease	NR [NR]	N
923	chr4	44431493	44431494	rs6447335	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	4p13		rs6447335-?	NR	1E-9				NR [~ 8900000] (imputed)	N
924	chr4	44501350	44501351	rs7439324	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	4p13	KCTD8	rs7439324-C	0.837732	2E-8		0.0107707	[0.007-0.0145] unit increase	Affymetrix [12370749]	N
924	chr4	44503502	44503503	rs34617913	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	4p13	NR	rs34617913-G	0.2966	3E-8		0.0239	[0.015-0.032] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
924	chr4	44518234	44518235	rs1347901	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	4p13		rs1347901-?	NR	4E-9				NR [~ 8900000] (imputed)	N
924	chr4	44530235	44530236	rs2118934	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	4p13	NR	rs2118934-C	0.416	2E-6	(IFNGR1_of_monocytes)			Illumina [5084123] (imputed)	N
924	chr4	44532645	44532646	rs780590302	30194396	Rafnar T	2018-09-07	Nat Commun	Variants associating with uterine leiomyoma highlight genetic background shared by various cancers and hormone-related traits.	Uterine fibroids	16,595 European ancestry cases, 523,330 European ancestry controls	NA	4p13	KCTD8	rs780590302-A	0.00305	4E-10		2.45	[1.86-3.23]	Affymetrix, Illumina [43421991] (imputed)	N
924	chr4	44535865	44535866	rs7686205	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Sleep duration	384,317 European ancestry individuals	NA	4p13		rs7686205-G	0.3794	1E-8		0.0143	[0.0094-0.0192] unit increase	Affymetrix, Illumina [10862567] (imputed)	N
925	chr4	44582486	44582487	rs10938353	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	4p13	YIPF7	rs10938353-G	0.836	6E-6	(EA, women)	0.029	[0.016-0.042] kg/m2 increase	Affymetrix, Illumina [2550021]	N
926	chr4	44817805	44817806	rs77132247	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	4p12	Intergenic	rs77132247-A	0.9413	2E-8	(MTAG)	0.0197	[0.013-0.027] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
927	chr4	44877931	44877932	rs16857657	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	4p12	NR	rs16857657-?	NR	3E-6				Affymetrix [NR]	N
927	chr4	44933150	44933151	rs28526098	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	4p12	GNPDA2, GUF1	rs28526098-?		5E-18				Affymetrix, Illumina [NR] (imputed)	N
927	chr4	44942321	44942322	rs143515557	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Systolic blood pressure (baseline)	5,304 African American individuals, 13,137 European ancestry individuals, 1,317 Hispanic individuals, 1,439 admixed individuals, 703 Chinese ancestry individuals	6,500 African American individuals, 2,451 European ancestry individuals, 2,869 Hispanic individuals	4p12	NR	rs143515557-C	0.0162	5E-8		5.3069	[3.4-7.22] mmHg increase	Affymetrix, Illumina [NR] (imputed)	N
927	chr4	44942321	44942322	rs143515557	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Systolic blood pressure (baseline)	5,304 African American individuals	6,500 African American individuals	4p12	NR	rs143515557-C	0.0162	5E-8		5.3069	[3.4-7.22] mmHg increase	Affymetrix, Illumina [NR] (imputed)	N
927	chr4	44949764	44949765	rs116377885	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	4p12	NR	rs116377885-A	NR	3E-6	(male)	0.5043	[0.29-0.72] unit increase	Illumina [11133794] (imputed)	N
928	chr4	44958827	44958828	rs6810402	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	4p12	NR	rs6810402-?	NR	6E-6		4.537	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
928	chr4	45031729	45031730	rs11932923	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	4p12	NR	rs11932923-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
928	chr4	45036445	45036446	rs12503491	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	4p12	NR	rs12503491-?	NR	7E-13				Affymetrix [~ 8270000] (imputed)	N
928	chr4	45066860	45066861	rs28705704	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	4p12	NR	rs28705704-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
928	chr4	45076215	45076216	rs1159118	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	4p12	NR	rs1159118-?	NR	7E-12				Affymetrix [~ 8270000] (imputed)	N
928	chr4	45079007	45079008	rs996004	26969751	Parmar PG	2016-03-11	Circ Cardiovasc Genet	International Genome-Wide Association Study Consortium Identifies Novel Loci Associated With Blood Pressure in Children and Adolescents.	Systolic blood pressure	5,008 European ancestry prepubescent females, 5,082 European ancestry prepubescent males, 4,238 European ancestry pubescent females, 4,185 European ancestry pubescent males, 2,680 European ancestry post-pubescent females, 2,496 European ancestry post-pubescent males	NA	4p12	GUF1, GNPDA2	rs996004-?	NR	9E-7	(Female, Post-puberty)	0.256	[0.154-0.358] unit increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
929	chr4	45109017	45109018	rs2882049	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	4p12	NR	rs2882049-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
929	chr4	45113126	45113127	rs36024704	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	4p12		rs36024704-T	NR	3E-15		0.0111	[0.0084-0.0138] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
929	chr4	45121872	45121873	rs7662792	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	4p12		rs7662792-T	NR	1E-8		0.0129	[0.0086-0.0172] unit increase	Affymetrix, Illumina [20529698] (imputed)	N
929	chr4	45127497	45127498	rs62409631	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota relative abundance (bacterial taxa)	up to 858 Metropolitan French ancestry individuals	NA	4p12	NR	rs62409631-?	NR	1E-8	(Butyricimonas_paravirosa)	0.485613	[0.33-0.65] unit increase	Illumina [5293637] (imputed)	N
929	chr4	45134712	45134713	rs6845703	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	4p12	NR	rs6845703-G	0.337561	1E-11		0.0150625	[0.011-0.019] unit decrease	NR [NR]	N
929	chr4	45134712	45134713	rs6845703	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	4p12		rs6845703-?	NR	5E-13				NR [~ 8900000] (imputed)	N
929	chr4	45163332	45163333	rs13130765	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	4p12	Intergenic	rs13130765-C	0.4684	1E-8	(MTAG)	0.0095	[0.0062-0.0128] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
929	chr4	45163332	45163333	rs13130765	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	4p12		rs13130765-C	0.4721	2E-10		0.0091	[0.0064-0.0118] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
929	chr4	45163332	45163333	rs13130765	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	4p12	Intergenic	rs13130765-C	0.4721	3E-11	(MTAG)	0.0088	[0.0063-0.0113] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
929	chr4	45164636	45164637	rs1996023	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	4p12		rs1996023-G	0.71082	1E-16		0.0247765	[0.019-0.031] unit decrease	Illumina [13479924] (imputed)	N
929	chr4	45164636	45164637	rs1996023	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	163,835 East Asian ancestry individuals	NA	4p12		rs1996023-G	0.710564	2E-17		0.0298964	[0.023-0.037] unit decrease	Illumina [13479178] (imputed)	N
929	chr4	45164636	45164637	rs1996023	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	4p12	GNPDA2, GABRG1	rs1996023-G	0.71	1E-17	(Japanese)	0.032	[0.024-0.04] unit decrease	Illumina [6108953] (imputed)	N
929	chr4	45165650	45165653	rs144582188	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	4p12		rs144582188-A	NR	3E-41		0.0234	[0.02-0.027] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
929	chr4	45165650	45165653	rs144582188	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	4p12	RP11-362I1.1	rs144582188-A	0.4238	2E-8		0.0366	[0.024-0.049] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
929	chr4	45165650	45165653	rs144582188	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	4p12	RP11-362I1.1	rs144582188-A	0.4238	3E-12		0.0459	[0.033-0.059] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
929	chr4	45175690	45175691	rs13130484	33491310	Warner ET	2021-02-01	Obesity (Silver Spring)	A Genome-Wide Association Study of Childhood Body Fatness.	Childhood body fatness	34,401 European ancestry individuals	NA	4p12	NR	rs13130484-?	NR	2E-8		8.589	NR z score increase	Affymetrix, Illumina [10031233] (imputed)	N
929	chr4	45175690	45175691	rs13130484	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Body mass index	17,127 African American individuals, 21,955 Hispanic/Latino individuals, 4,647 Asian ancestry individuals, 3,936 Native Hawaiian ancestry individuals, 645 Native American ancestry individuals, 1,025 individuals	NA	4p12	NR	rs13130484-?	NR	2E-13		0.04935633	[0.036-0.063] unit increase	Illumina [32062178] (imputed)	N
929	chr4	45175690	45175691	rs13130484	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	4p12	NR	rs13130484-?	NR	1E-21		0.20405	[0.16-0.25] unit increase	Affymetrix [7794483] (imputed)	N
929	chr4	45175690	45175691	rs13130484	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	4p12	NR	rs13130484-?	NR	1E-12	(male)	0.18634	[0.13-0.24] unit increase	Affymetrix [7794483] (imputed)	N
929	chr4	45175690	45175691	rs13130484	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	4p12	NR	rs13130484-?	NR	1E-10	(female)	0.22389	[0.16-0.29] unit increase	Affymetrix [7794483] (imputed)	N
929	chr4	45175690	45175691	rs13130484	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	4p12	NA	rs13130484-T	0.4294	8E-18		0.0147	[0.011-0.018] unit increase	NR [~ 27400000] (imputed)	N
929	chr4	45175690	45175691	rs13130484	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	316,772 European ancestry male individuals	NA	4p12	NR	rs13130484-T	0.4294	8E-18		0.0147	[0.011-0.018] unit increase	NR [~ 27400000] (imputed)	N
929	chr4	45175690	45175691	rs13130484	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	4p12	NA	rs13130484-T	0.4296	8E-86		0.0321	[0.029-0.035] unit increase	NR [~ 27400000] (imputed)	N
929	chr4	45175690	45175691	rs13130484	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	4p12	GNPDA2	rs13130484-T	0.4333	1E-12		0.002	[0.0014-0.0026] unit decrease	Affymetrix [15275733] (imputed)	N
929	chr4	45175690	45175691	rs13130484	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	4p12	GNPDA2	rs13130484-?	NR	1E-7	(EA, men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
929	chr4	45175690	45175691	rs13130484	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	4p12	GNPDA2	rs13130484-T	0.4325	6E-12	(EA, men)	0.0393	[0.028-0.05] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
929	chr4	45175690	45175691	rs13130484	26604143	Felix JF	2015-11-24	Hum Mol Genet	Genome-wide association analysis identifies three new susceptibility loci for childhood body mass index.	Childhood body mass index	34,744 European ancestry children	11,313 European ancestry children	4p12	GNPDA2	rs13130484-T	0.44	2E-23		0.067	[0.053-0.081] unit increase	Affymetrix, Illumina [2499691] (imputed)	N
929	chr4	45175690	45175691	rs13130484	23669352	Graff M	2013-05-12	Hum Mol Genet	Genome-wide analysis of BMI in adolescents and young adults reveals additional insight into the effects of genetic loci over the life course.	Body mass index	Up to 13,627 European ancestry individuals	Up to 16,253 European ancestry individuals	4p12	GNPDA2	rs13130484-T	0.43	6E-9		0.05	[0.032-0.068] unit increase	Affymetrix, Illumina [557887] (imputed)	N
929	chr4	45175690	45175691	rs13130484	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry  class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry class I obese individuals, 5,476 European ancestry class II obese individuals, 1,162 European ancestry class III obese individuals, up to 39,294 European ancestry controls	4p12	GNPDA2	rs13130484-T	0.43	4E-28	(Overweight)	1.08	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
929	chr4	45175690	45175691	rs13130484	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry  class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry class I obese individuals, 5,476 European ancestry class II obese individuals, 1,162 European ancestry class III obese individuals, up to 39,294 European ancestry controls	4p12	GNPDA2	rs13130484-T	0.43	3E-18	(Obesity class II)	1.14	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
929	chr4	45175803	45175804	rs16858082	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Body mass index	17,127 African American individuals, 21,955 Hispanic/Latino individuals, 4,647 Asian ancestry individuals, 3,936 Native Hawaiian ancestry individuals, 645 Native American ancestry individuals, 1,025 individuals	NA	4p12	NR	rs16858082-?	NR	9E-8		0.03370956	[0.021-0.046] unit decrease	Illumina [32062178] (imputed)	N
929	chr4	45175803	45175804	rs16858082	24861553	Wen W	2014-05-26	Hum Mol Genet	Meta-analysis of genome-wide association studies in East Asian-ancestry populations identifies four new loci for body mass index.	Body mass index	82,438 East Asian ancestry individuals, 4,301 South East Asian ancestry individuals	Up to 47,352 East Asian ancestry individuals	4p12	GNPDA2	rs16858082-T	0.35	4E-9		0.0324	[0.022-0.043] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
929	chr4	45177546	45177547	rs35478252	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	4p12	RP11-362I1.1	rs35478252-A	0.4291	4E-8		0.0371	[0.024-0.05] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
929	chr4	45177546	45177547	rs35478252	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	4p12	RP11-362I1.1	rs35478252-A	0.4291	4E-8		0.0371	[0.024-0.05] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
929	chr4	45178080	45178081	rs74715904	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	4p12	NR	rs74715904-?	NR	2E-13				Affymetrix [~ 8270000] (imputed)	N
929	chr4	45178080	45178081	rs74715904	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	4p12	GNPDA2	rs74715904-A	0.909	3E-8		0.0114	[0.0073-0.0155] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
929	chr4	45179882	45179883	rs12641981	33045005	Vogelezang S	2020-10-12	PLoS Genet	Novel loci for childhood body mass index and shared heritability with adult cardiometabolic traits.	Childhood body mass index	39,620 European ancestry individuals	NA	4p12	GNPDA2	rs12641981-T	0.44	4E-8		0.044	[0.028-0.06] unit increase	Affymetrix, Illumina [8227808] (imputed)	N
929	chr4	45179882	45179883	rs12641981	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	4p12	GNPDA2	rs12641981-C	0.565002	2E-55		0.0222039	[0.019-0.025] unit decrease	Affymetrix [12370749]	N
929	chr4	45179882	45179883	rs12641981	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically inactive individuals	561 African American women, 352 Filipino ancestry women, 725 Indian ancestry women, 19,366 European ancestry women, 251 African American men, 4,654 Indian ancestry men, 11,727 European ancestry men, 959 European ancestry individuals	1,437 African American women, 5,184 European ancestry women, 64 African American men, 5,416 European ancestry men	4p12	GNPDA2	rs12641981-T	0.4252	7E-6	(men)	0.0485	[0.027-0.07] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
929	chr4	45179882	45179883	rs12641981	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	4p12	GNPDA2	rs12641981-?	NR	1E-12	(men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
929	chr4	45179882	45179883	rs12641981	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	4p12	GNPDA2	rs12641981-T	0.4226	1E-13	(men)	0.0397	[0.029-0.05] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
929	chr4	45181333	45181334	rs12507026	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	4p12		rs12507026-T	0.296092152	5E-9		1.0541047	[1.035672199-1.072865332]	Illumina [8919992] (imputed)	N
929	chr4	45181333	45181334	rs12507026	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		4p12	GNPDA2	rs12507026-A	0.565253	2E-41		0.0186737	[0.016-0.021] unit decrease	Affymetrix [12370749]	N
929	chr4	45181333	45181334	rs12507026	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	4p12	NR	rs12507026-?	NR	3E-51				Affymetrix [~ 8270000] (imputed)	N
929	chr4	45181333	45181334	rs12507026	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Waist circumference variance	347,158 European ancestry individuals	NA	4p12	GNPDA2	rs12507026-?	NR	2E-11				NR [5554549] (imputed)	N
929	chr4	45181333	45181334	rs12507026	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Waist circumference	347,158 European ancestry individuals	NA	4p12	GNPDA2	rs12507026-?	NR	9E-31				NR [5554549] (imputed)	N
929	chr4	45181333	45181334	rs12507026	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Body mass index variance	346,393 European ancestry individuals	NA	4p12	GNPDA2	rs12507026-?	NR	2E-11				NR [5554549] (imputed)	N
929	chr4	45181333	45181334	rs12507026	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Body mass index	346,393 European ancestry individuals	NA	4p12	GNPDA2	rs12507026-?	NR	7E-41				NR [5554549] (imputed)	N
929	chr4	45181333	45181334	rs12507026	30677029	Riveros-McKay F	2019-01-24	PLoS Genet	Genetic architecture of human thinness compared to severe obesity.	Obese vs. thin	1,456 British ancestry obese children, 1,471 European ancestry thin adults	up to 7,526 British ancestry obese individuals, 7,962 obese individuals, up to 3,532 British ancestry thin individuals, 8,106 thin individuals	4p12	GNPDA2	rs12507026-T	0.409228	6E-15		1.18	[1.13-1.23]	Illumina [41266535] (imputed)	N
929	chr4	45181333	45181334	rs12507026	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	4p12		rs12507026-?	NR	3E-52				NR [~ 8900000] (imputed)	N
929	chr4	45182526	45182527	rs10938397	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	4p12		rs10938397-G	NR	1E-49		0.0289	[0.025-0.033] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
929	chr4	45182526	45182527	rs10938397	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	4p12		rs10938397-G	0.43	2E-36				NR [NR] (imputed)	N
929	chr4	45182526	45182527	rs10938397	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	4p12		rs10938397-G	0.43	7E-41		0.02	% increase	NR [NR] (imputed)	N
929	chr4	45182526	45182527	rs10938397	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Alanine aminotransferase levels	429,203 European ancestry individuals	NA	4p12		rs10938397-G	0.43	5E-6		0.009	U/L increase	NR [NR] (imputed)	N
929	chr4	45182526	45182527	rs10938397	33910581	Zhuang Z	2021-04-29	BMC Med	Shared genetic etiology and causality between body fat percentage and cardiovascular diseases: a large-scale genome-wide cross-trait analysis.	Body fat percentage or heart failure (MTAG)	89,297 European ancestry individuals with body fat percentage, 47,309 European ancestry cases with heart failure, 930,014 European ancestry controls without heart failure, 11,419 Korean ancestry, Indian Asian ancestry, Jamaican ancestry individuals with body fat percentage	NA	4p12		rs10938397-?	NR	4E-10		0.0376	[0.022-0.053] unit increase	NR [NR] (imputed)	N
929	chr4	45182526	45182527	rs10938397	33910581	Zhuang Z	2021-04-29	BMC Med	Shared genetic etiology and causality between body fat percentage and cardiovascular diseases: a large-scale genome-wide cross-trait analysis.	Body fat percentage or coronary artery disease (MTAG)	89,297 European ancestry individuals with body fat percentage, 11,419 Korean ancestry, Indian ancestry, Jamaican ancestry individuals with body fat percentage, 61,289 European ancestry, East Asian ancestry, South Asian ancestry, African American, Hispanic cases with coronary artery disease, 134,524 European ancestry, East Asian ancestry, South Asian ancestry, African American, Hispanic controls without coronary artery disease	NA	4p12		rs10938397-?	NR	1E-9		0.0306	[0.012-0.049] unit decrease	NR [NR] (imputed)	N
929	chr4	45182526	45182527	rs10938397	31840077	Couto Alves A	2019-09-04	Sci Adv	GWAS on longitudinal growth traits reveals different genetic factors influencing infant, child, and adult BMI.	BMI at adiposity rebound	6,051 European ancestry children	12,192 European ancestry children	4p12	GNPDA2	rs10938397-G	0.35	3E-8		0.06	[0.04-0.08] unit increase	Affymetrix, Illumina [up to 2543888] (imputed)	N
929	chr4	45182526	45182527	rs10938397	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Body mass index	17,127 African American individuals, 21,955 Hispanic/Latino individuals, 4,647 Asian ancestry individuals, 3,936 Native Hawaiian ancestry individuals, 645 Native American ancestry individuals, 1,025 individuals	NA	4p12	NR	rs10938397-?	NR	1E-13		0.04989543	[0.037-0.063] unit increase	Illumina [32062178] (imputed)	N
929	chr4	45182526	45182527	rs10938397	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	4p12		rs10938397-?	NR	5E-22				NR [~ 8900000] (imputed)	N
929	chr4	45182526	45182527	rs10938397	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	4p12	NR	rs10938397-?	NR	4E-14		0.16856	[0.12-0.21] unit increase	Affymetrix [7794483] (imputed)	N
929	chr4	45182526	45182527	rs10938397	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	4p12	NR	rs10938397-?	NR	3E-11	(male)	0.23323	[0.16-0.3] unit increase	Affymetrix [7794483] (imputed)	N
929	chr4	45182526	45182527	rs10938397	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	4p12	NA	rs10938397-A	0.57	2E-86		0.0322	[0.029-0.035] unit decrease	NR [~ 27400000] (imputed)	N
929	chr4	45182526	45182527	rs10938397	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	4p12	NA	rs10938397-A	0.57	2E-86		0.0322	[0.029-0.035] unit decrease	NR [~ 27400000] (imputed)	N
929	chr4	45182526	45182527	rs10938397	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	4p12	NR	rs10938397-A	NR	1E-47		0.037	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
929	chr4	45182526	45182527	rs10938397	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	4p12	GNPDA2, GABRG1	rs10938397-G	0.42	3E-48		0.035	[0.031-0.039] unit increase	Illumina [6108953] (imputed)	N
929	chr4	45182526	45182527	rs10938397	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically inactive individuals	561 African American women, 352 Filipino ancestry women, 725 Indian ancestry women, 19,366 European ancestry women, 251 African American men, 4,654 Indian ancestry men, 11,727 European ancestry men, 959 European ancestry individuals	1,437 African American women, 5,184 European ancestry women, 64 African American men, 5,416 European ancestry men	4p12	GNPDA2	rs10938397-G	0.4304	1E-7	(EA)	0.0416	[0.026-0.057] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
929	chr4	45182526	45182527	rs10938397	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically inactive individuals	561 African American women, 352 Filipino ancestry women, 725 Indian ancestry women, 19,366 European ancestry women, 251 African American men, 4,654 Indian ancestry men, 11,727 European ancestry men, 959 European ancestry individuals	1,437 African American women, 5,184 European ancestry women, 64 African American men, 5,416 European ancestry men	4p12	GNPDA2	rs10938397-G	0.4205	4E-8		0.0414	[0.027-0.056] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
929	chr4	45182526	45182527	rs10938397	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	4p12	GNPDA2	rs10938397-G	0.4333	3E-14	(EA)	0.0328	[0.024-0.041] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
929	chr4	45182526	45182527	rs10938397	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	4p12	GNPDA2	rs10938397-G	0.4317	3E-9	(men)	0.0364	[0.024-0.048] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
929	chr4	45182526	45182527	rs10938397	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	4p12	GNPDA2	rs10938397-G	0.4312	3E-8	(EA,women)	0.0306	[0.02-0.041] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
929	chr4	45182526	45182527	rs10938397	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	4p12	GNPDA2	rs10938397-G	0.4224	1E-14		0.0319	[0.024-0.04] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
929	chr4	45182526	45182527	rs10938397	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	4p12	GNPDA2	rs10938397-G	0.41569999999999996	2E-8	(women)	0.0293	[0.019-0.039] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
929	chr4	45182526	45182527	rs10938397	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	4p12	GNPDA2	rs10938397-?	NR	3E-11	(women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
929	chr4	45182526	45182527	rs10938397	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	4p12	GNPDA2	rs10938397-?	NR	2E-20				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
929	chr4	45182526	45182527	rs10938397	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	4p12	GNPDA2	rs10938397-?	NR	2E-19	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
929	chr4	45182526	45182527	rs10938397	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	4p12	GNPDA2	rs10938397-?	NR	1E-10	(EA, women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
929	chr4	45182526	45182527	rs10938397	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	4p12	GNPDA2	rs10938397-G	0.4333	3E-20	(EA)	0.0354	[0.028-0.043] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
929	chr4	45182526	45182527	rs10938397	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	4p12	GNPDA2	rs10938397-G	0.4333	2E-11	(EA, women)	0.0335	[0.024-0.043] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
929	chr4	45182526	45182527	rs10938397	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	4p12	GNPDA2	rs10938397-G	0.4224	9E-12	(women)	0.0322	[0.023-0.041] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
929	chr4	45182526	45182527	rs10938397	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	4p12	GNPDA2	rs10938397-G	0.4224	2E-21		0.0347	[0.028-0.042] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
929	chr4	45182526	45182527	rs10938397	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	4p12	GNPDA2	rs10938397-A	0.5821	7E-23				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
929	chr4	45182526	45182527	rs10938397	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	4p12	GNPDA2	rs10938397-A	0.5821	3E-11	(men)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
929	chr4	45182526	45182527	rs10938397	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	4p12	GNPDA2	rs10938397-A	0.5821	2E-13	(women)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
929	chr4	45182526	45182527	rs10938397	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in smokers	19,883 European ancestry women, up to 16,928 European ancestry men, up to 973 European ancestry individuals, 1,701 African American/Afro-Caribbean ancestry women, 903 African American/Afro-Caribbean ancestry men, 10 Indian Asian ancestry women, 957 Indian Asian ancestry men, 267 Filipino ancestry women, 475 Hispanic/Latino ancestry women, 446 Hispanic/Latino ancestry men	5,485 European ancestry women, 6,471 European ancestry men, 13,416 European ancestry individuals, 253 African American/Afro-Caribbean ancestry women, 208 African American/Afro-Caribbean ancestry men	4p12	GNPDA2	rs10938397-A	0.5821	3E-7		0.036	[0.022-0.05] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
929	chr4	45182526	45182527	rs10938397	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in non-smokers	77,279 European ancestry women, 47,280 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	4p12	GNPDA2	rs10938397-A	0.5821	5E-8	(men)	0.03	[0.019-0.041] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
929	chr4	45182526	45182527	rs10938397	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in non-smokers	77,279 European ancestry women, 47,280 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	4p12	GNPDA2	rs10938397-A	0.5821	4E-18		0.0323	[0.025-0.04] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
929	chr4	45182526	45182527	rs10938397	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in non-smokers	77,279 European ancestry women, 47,280 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	4p12	GNPDA2	rs10938397-A	0.5821	2E-12	(women)	0.0344	[0.025-0.044] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
929	chr4	45182526	45182527	rs10938397	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	4p12	GNPDA2	rs10938397-A	0.5821	4E-13	(men)	0.0346	[0.025-0.044] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
929	chr4	45182526	45182527	rs10938397	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	4p12	GNPDA2	rs10938397-A	0.5821	2E-23		0.0329	[0.026-0.039] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
929	chr4	45182526	45182527	rs10938397	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	4p12	GNPDA2	rs10938397-A	0.5821	2E-13	(women)	0.032	[0.024-0.04] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
929	chr4	45182526	45182527	rs10938397	28430825	Ng MCY	2017-04-21	PLoS Genet	Discovery and fine-mapping of adiposity loci using high density imputation of genome-wide association studies in individuals of African ancestry: African Ancestry Anthropometry Genetics Consortium.	Body mass index (adult)	16,559 African ancestry men, 26,193 African ancestry women	2,458 African ancestry men, 7,685 African ancestry women, 152,893 European ancestry men, 171,977 European ancestry women	4p12	GNPDA2	rs10938397-G	0.242	6E-46		0.044	[0.028-0.06] unit increase	Affymetrix, Illumina [17972087] (imputed)	N
929	chr4	45182526	45182527	rs10938397	28430825	Ng MCY	2017-04-21	PLoS Genet	Discovery and fine-mapping of adiposity loci using high density imputation of genome-wide association studies in individuals of African ancestry: African Ancestry Anthropometry Genetics Consortium.	Body mass index (adult)	16,559 African ancestry men, 26,193 African ancestry women	2,458 African ancestry men, 7,685 African ancestry women, 152,893 European ancestry men, 171,977 European ancestry women	4p12	GNPDA2	rs10938397-G	0.242	4E-9	(AA)	0.044	[0.028-0.06] unit increase	Affymetrix, Illumina [17972087] (imputed)	N
929	chr4	45182526	45182527	rs10938397	28430825	Ng MCY	2017-04-21	PLoS Genet	Discovery and fine-mapping of adiposity loci using high density imputation of genome-wide association studies in individuals of African ancestry: African Ancestry Anthropometry Genetics Consortium.	Body mass index (adult)	16,559 African ancestry men, 26,193 African ancestry women	2,458 African ancestry men, 7,685 African ancestry women, 152,893 European ancestry men, 171,977 European ancestry women	4p12	GNPDA2	rs10938397-G	0.242	2E-6	(AA,Women)	0.045	[0.027-0.063] unit increase	Affymetrix, Illumina [17972087] (imputed)	N
929	chr4	45182526	45182527	rs10938397	26961502	Wood AR	2016-03-10	Diabetologia	Variants in the FTO and CDKAL1 loci have recessive effects on risk of obesity and type 2 diabetes, respectively.	Body mass index	29,925 British ancestry cases, 89,763 British ancestry controls	NA	4p12	GNPDA2	rs10938397-G	NR	6E-13	(additive model)	0.03	[0.022-0.038] unit increase	NR [9288881] (imputed)	N
929	chr4	45182526	45182527	rs10938397	26604143	Felix JF	2015-11-24	Hum Mol Genet	Genome-wide association analysis identifies three new susceptibility loci for childhood body mass index.	Childhood body mass index	34,744 European ancestry children	11,313 European ancestry children	4p12	NR	rs10938397-G	NR	2E-9				Affymetrix, Illumina [2499691] (imputed)	N
929	chr4	45182526	45182527	rs10938397	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	4p12	NR	rs10938397-A	0.568726549945368	1E-48		0.040631566	unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
929	chr4	45182526	45182527	rs10938397	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	4p12	GNPDA2	rs10938397-G	0.436	2E-22	(EA, men)	0.04	[0.032-0.048] kg/m2 increase	Affymetrix, Illumina [2550021]	N
929	chr4	45182526	45182527	rs10938397	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	4p12	GNPDA2	rs10938397-G	0.434	3E-38	(EA)	0.04	[0.034-0.046] kg/m2 increase	Affymetrix, Illumina [2550021]	N
929	chr4	45182526	45182527	rs10938397	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	4p12	GNPDA2	rs10938397-G	0.432	3E-23	(EA, women)	0.04	[0.032-0.048] kg/m2 increase	Affymetrix, Illumina [2550021]	N
929	chr4	45182526	45182527	rs10938397	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	4p12	GNPDA2	rs10938397-G	0.428	1E-40		0.04	[0.034-0.046] kg/m2 increase	Affymetrix, Illumina [2550021]	N
929	chr4	45182526	45182527	rs10938397	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	4p12	GNPDA2	rs10938397-A	0.5637	6E-20	(EA)	0.0316	[0.025-0.038] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
929	chr4	45182526	45182527	rs10938397	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	4p12	GNPDA2	rs10938397-A	0.5637	4E-10	(EA, women)	0.0281	[0.019-0.037] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
929	chr4	45182526	45182527	rs10938397	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	4p12	GNPDA2	rs10938397-A	0.5637	3E-14	(EA, men)	0.0364	[0.027-0.046] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
929	chr4	45182526	45182527	rs10938397	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	4p12	GNPDA2	rs10938397-A	0.5626	9E-17	(EA)	0.0303	[0.023-0.038] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
929	chr4	45182526	45182527	rs10938397	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	4p12	GNPDA2	rs10938397-A	0.5626	7E-12	(EA, men)	0.0342	[0.024-0.044] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
929	chr4	45182526	45182527	rs10938397	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	4p12	GNPDA2	rs10938397-A	0.5626	3E-9	(EA,women)	0.0278	[0.019-0.037] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
929	chr4	45182526	45182527	rs10938397	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	4p12	GNPDA2	rs10938397-A	0.57	4E-13		0.04	[0.03-0.05] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
929	chr4	45182526	45182527	rs10938397	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry  class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry class I obese individuals, 5,476 European ancestry class II obese individuals, 1,162 European ancestry class III obese individuals, up to 39,294 European ancestry controls	4p12	GNPDA2	rs10938397-G	0.43	3E-34	(Obesity class I)	1.12	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
929	chr4	45182526	45182527	rs10938397	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Body mass index	7,962 European ancestry high body mass index individuals, 8,106 European ancestry low body mass index individuals	4,900 European ancestry high body mass index individuals, 4,891 European ancestry low body mass index individuals	4p12	GNPDA2	rs10938397-G	0.43	2E-13		1.16	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
929	chr4	45182526	45182527	rs10938397	20935630	Speliotes EK	2010-10-10	Nat Genet	Association analyses of 249,796 individuals reveal 18 new loci associated with body mass index.	Body mass index	Up to 123,865 European ancestry individuals	Up to 125,931 European ancestry individuals	4p12	GNPDA2	rs10938397-G	0.43	4E-31		0.18	[0.14-0.22] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2800000] (imputed)	N
929	chr4	45182526	45182527	rs10938397	19079261	Willer CJ	2008-12-14	Nat Genet	Six new loci associated with body mass index highlight a neuronal influence on body weight regulation.	Body mass index	32,387 European ancestry individuals	59,082 European ancestry individuals	4p12	GNPDA2	rs10938397-G	0.45	3E-16		0.19	[0.13-0.25] kg/m2 increase	Affymetrix, Illumina [2399588] (imputed)	N
929	chr4	45184441	45184442	rs348495	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Body mass index	17,127 African American individuals, 21,955 Hispanic/Latino individuals, 4,647 Asian ancestry individuals, 3,936 Native Hawaiian ancestry individuals, 645 Native American ancestry individuals, 1,025 individuals	NA	4p12	NR	rs348495-?	NR	4E-11		0.04203504	[0.03-0.054] unit decrease	Illumina [32062178] (imputed)	N
929	chr4	45184441	45184442	rs348495	23583978	Monda KL	2013-04-14	Nat Genet	A meta-analysis identifies new loci associated with body mass index in individuals of African ancestry.	Body mass index	37,956 African American individuals, 1,188 Nigerian ancestry individuals	27,661 African America/Afro-Caribbean individuals, 4,607 Sub-Saharan African ancestry individuals, 123,706 European ancestry inidividuals	4p12	GNPDA2	rs348495-G	0.34	2E-10	(AA and Sub-Saharan)	0.051	[0.035-0.067] unit increase	Affymetrix, Illumina [3283202] (imputed)	N
929	chr4	45184906	45184907	rs13104545	30677029	Riveros-McKay F	2019-01-24	PLoS Genet	Genetic architecture of human thinness compared to severe obesity.	Obesity (extreme)	1,456 British ancestry obese children, 6,460 European ancestry control adults	up to 7,526 British ancestry obese individuals, at least 4,405 obese individuals, up to 20,720 British ancestry controls, 61,166 controls	4p12	GNPDA2	rs13104545-A	0.234519	1E-11		1.13	[1.09-1.17]	Illumina [~ 41266535] (imputed)	N
929	chr4	45186138	45186139	rs10938398	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	4p12		rs10938398-A	NR	5E-14		0.0491	[0.036-0.062] unit increase	Affymetrix, Illumina [25845091] (imputed)	N
929	chr4	45186138	45186139	rs10938398	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	46,511 Asian ancestry cases, 169,776 Asian ancestry controls	NA	4p12	NR	rs10938398-G	0.7038	2E-9		0.057	[0.038-0.076] unit decrease	Affymetrix, Illumina [1077427] (imputed)	N
929	chr4	45186138	45186139	rs10938398	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	4p12	NR	rs10938398-G	0.5687	4E-20		0.0425	[0.033-0.052] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
929	chr4	45186138	45186139	rs10938398	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	4p12	NR	rs10938398-G	0.6065	1E-30		0.0445	[0.037-0.052] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
929	chr4	45186138	45186139	rs10938398	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	4p12	GNPDA2	rs10938398-A	0.292	4E-10		1.05	[1.03-1.06]	Affymetrix, Illumina [11800000] (imputed)	N
929	chr4	45186138	45186139	rs10938398	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	4p12	NR	rs10938398-A	0.4332	1E-29		0.028359316	[0.023-0.033] unit increase	Affymetrix [10549349] (imputed)	N
929	chr4	45186138	45186139	rs10938398	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	4p12	GNPDA2	rs10938398-A	0.3	2E-9		1.06	1.04-1.08	Illumina [12557761] (imputed)	N
929	chr4	45186138	45186139	rs10938398	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	4p12	GNPDA2	rs10938398-A	0.4289	4E-12		1.05	[1.03-1.06]	Affymetrix, Illumina [~ 27000000] (imputed)	N
929	chr4	45186138	45186139	rs10938398	29381148	Gong J	2017-12-21	Int J Obes (Lond)	Trans-ethnic analysis of metabochip data identifies two new loci associated with BMI.	Body mass index	35,606 African American individuals, 26,048 Hispanic/Latino individuals, 22,466 Asian or Native Hawaiian ancestry individuals, 17,859 European ancestry individuals, 535 Native American individuals	NA	4p12	intergenic	rs10938398-A		4E-13		0.0062	[0.0046-0.0078] unit increase	Illumina [at least 200000]	N
929	chr4	45187404	45187405	rs191643103	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	4p12	NR	rs191643103-?	NR	8E-6		1.05777	[0.59-1.52] unit increase	NR [13958389] (imputed)	N
929	chr4	45187621	45187622	rs925494	31504550	Bradfield JP	2019-07-05	Hum Mol Genet	A Trans-ancestral Meta-Analysis of Genome-Wide Association Studies Reveals Loci Associated with Childhood Obesity.	Childhood obesity	8,613 European ancestry cases, 3,213 African American cases, 69 Moroccan ancestry cases, 986 Hispanic/Latino cases, 124 East Asian ancestry cases, 12,696 European ancestry controls, 1,392 African American controls, 64 Moroccan ancestry controls, 993 Hispanic/Latino controls, 454 East Asian ancestry controls	NA	4p12	NR	rs925494-T	NR	2E-7	(EA)	0.1098	[0.068-0.151] unit increase	Affymetrix, Illumina [up to 15123508] (imputed)	N
929	chr4	45187621	45187622	rs925494	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	4p12	RP11-362I1.1	rs925494-T	0.1251	7E-6		0.0619	[0.035-0.089] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
929	chr4	45202637	45202638	rs11933464	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 11, projection of the nose)	2,187 European ancestry individuals	NA	4p12	NR	rs11933464-T	0.1169	7E-7		0.2361	[0.14-0.33] unit increase	Illumina [10677593] (imputed)	N
930	chr4	45285068	45285069	rs35004261	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	4p12	NR	rs35004261-?	NR	4E-13				Affymetrix [~ 8270000] (imputed)	N
930	chr4	45320938	45320939	rs2173754	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	4p12	GUF1	rs2173754-?	NR	9E-6	(3-hydroxyphenylacetic acid)	0.19042118	[0.11-0.27] unit increase	Affymetrix [at least 2500000] (imputed)	N
930	chr4	45325784	45325785	rs77790617	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	4p12	NR	rs77790617-?	NR	4E-7		1.9662	[1.32-2.61] unit increase	Illumina [at least 560000] (imputed)	N
931	chr4	45364913	45364914	rs10517133	21700879	Qi L	2011-06-23	Diabetes	Novel locus FER is associated with serum HMW adiponectin levels.	Adiponectin levels	1,591 European ancestry female individuals	626 European ancestry individuals from 235 families	4p12	AC108043.3-1	rs10517133-C	0.90	5E-6				Affymetrix [2543887] (imputed)	N
931	chr4	45383248	45383249	rs16858456	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	4p12	NR	rs16858456-?	NR	5E-9				Affymetrix [NR]	N
931	chr4	45472301	45472302	rs76670100	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4p12	NR	rs76670100-C	0.01394	8E-9	(CTH)	0.8331	NR unit increase	Illumina [1671387] (imputed)	N
931	chr4	45472693	45472694	rs1486618	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	4p12	GNPDA2	rs1486618-?	NR	6E-6	(adipic acid)	0.37403724	[0.21-0.54] unit decrease	Affymetrix [at least 2500000] (imputed)	N
932	chr4	45487678	45487679	rs6851779	30571770	Arnau-Soler A	2018-12-20	PLoS One	Genome-wide interaction study of a proxy for stress-sensitivity and its prediction of major depressive disorder.	Stress sensitivity (neuroticism score x major depressive disorder status interaction)	2,010 European ancestry cases, 5,145 European ancestry controls	NA	4p12	intergenic	rs6851779-A	NR	3E-6		0.31734	NR unit decrease	NR [560698] (imputed)	N
932	chr4	45547067	45547068	rs73135175	28990359	Polimanti R	2017-10-09	Am J Med Genet B Neuropsychiatr Genet	Ancestry-specific and sex-specific risk alleles identified in a genome-wide gene-by-alcohol dependence interaction study of risky sexual behaviors.	Risky sexual behaviors in alcohol dependence	454 African American women individuals, 1,087 African American men individuals, 444 European ancestry women individuals, 992 European ancestry men individuals.	NA	4p12	NR	rs73135175-?	0.9044	3E-8	(AA)			Illumina [at least 550000] (imputed)	N
932	chr4	45561431	45561432	rs6813907	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Aspartate aminotransferase levels in low alcohol consumption	8,716 individuals	NA	4p12	NR	rs6813907-?	NR	3E-6		0.0342	[0.02-0.049] unit increase	Illumina [~ 7800000] (imputed)	N
933	chr4	45656830	45656831	rs540409605	30194396	Rafnar T	2018-09-07	Nat Commun	Variants associating with uterine leiomyoma highlight genetic background shared by various cancers and hormone-related traits.	Uterine fibroids	16,595 European ancestry cases, 523,330 European ancestry controls	NA	4p12	GABRG1	rs540409605-G	0.00305	2E-10		2.48	[1.88-3.26]	Affymetrix, Illumina [43421991] (imputed)	N
933	chr4	45728793	45728794	rs67368051	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference	1,254 whole genome sequenced European ancestry individuals, 3,074 whole genome sequenced individuals, 29,716 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 701 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,050 Mylopotamos (founder/genetic isolate) individuals, 883 Pomak (founder/genetic isolate) individuals	205,909 European ancestry individuals	4p12	RNU6-931P	rs67368051-A	0.9096	6E-6		0.0653	[0.037-0.094] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
934	chr4	45788126	45788127	rs754058883	30194396	Rafnar T	2018-09-07	Nat Commun	Variants associating with uterine leiomyoma highlight genetic background shared by various cancers and hormone-related traits.	Uterine fibroids	16,595 European ancestry cases, 523,330 European ancestry controls	NA	4p12	GABRG1	rs754058883-C	0.0027	2E-11		2.71	[2.04-3.6]	Affymetrix, Illumina [43421991] (imputed)	N
934	chr4	45867460	45867461	rs7674482	22174851	Lingappa JR	2011-12-12	PLoS One	Genomewide association study for determinants of HIV-1 acquisition and viral set point in HIV-1 serodiscordant couples with quantified virus exposure.	HIV-1 viral setpoint	496 African ancestry cases	NA	4p12	AC095058.3	rs7674482-?	NR	5E-6				Illumina [990115]	N
935	chr4	45902381	45902382	rs140438455	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Chronic sinus infection	5,291 European ancestry cases, 79,622 European ancestry controls	NA	4p12	NR	rs140438455-?	NR	2E-6		1.9194	[0.92-2.92] unit increase	Illumina [at least 560000] (imputed)	N
935	chr4	45968560	45968561	rs10016110	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	4p12	Intergenic	rs10016110-A	0.384	9E-9	(MTAG)	0.0077	[0.0052-0.0102] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
935	chr4	45980055	45980056	rs12646216	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	4p12		rs12646216-?	NR	8E-8				NR [~ 8900000] (imputed)	N
935	chr4	45980055	45980056	rs12646216	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	4p12		rs12646216-T	0.3889	5E-9		0.0084	[0.0057-0.0111] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
935	chr4	46004256	46004257	rs779929745	30194396	Rafnar T	2018-09-07	Nat Commun	Variants associating with uterine leiomyoma highlight genetic background shared by various cancers and hormone-related traits.	Uterine fibroids	16,595 European ancestry cases, 523,330 European ancestry controls	NA	4p12	GABRG1	rs779929745-G	0.00272	3E-11		2.68	[2.01-3.56]	Affymetrix, Illumina [43421991] (imputed)	N
936	chr4	46042039	46042040	rs7662633	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	4p12		rs7662633-?	NR	5E-10				NR [~ 8900000] (imputed)	N
936	chr4	46044911	46044912	rs115071803	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	4p12	NR	rs115071803-?	NR	5E-6		4.546	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
937	chr4	46138805	46138806	rs772494879	30194396	Rafnar T	2018-09-07	Nat Commun	Variants associating with uterine leiomyoma highlight genetic background shared by various cancers and hormone-related traits.	Uterine fibroids	16,595 European ancestry cases, 523,330 European ancestry controls	NA	4p12	GABRG1	rs772494879-T	0.00272	3E-11		2.68	[2.01-3.56]	Affymetrix, Illumina [43421991] (imputed)	N
937	chr4	46189692	46189693	rs75259874	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mononucleosis	17,457 European ancestry cases, 68,446 European ancestry controls	NA	4p12	NR	rs75259874-?	NR	8E-6		0.2084	[0.12-0.3] unit increase	Illumina [at least 560000] (imputed)	N
937	chr4	46193278	46193279	rs490434	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	4p12	GABRA2	rs490434-A	0.4214	1E-15		0.015756039	[0.012-0.02] unit decrease	Illumina [9339358] (imputed)	N
937	chr4	46228041	46228042	rs144270241	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4p12	NR	rs144270241-A	0.02091	4E-9	(SEPT11)	0.02893	NR unit decrease	Illumina [1671387] (imputed)	N
937	chr4	46240286	46240287	rs535066	25087078	Anney RJ	2014-07-30	Lancet Neurol	Genetic determinants of common epilepsies: a meta-analysis of genome-wide association studies.	Epilepsy	405 European ancestry cases, 127 African American cases, 248 cases, 2,330 European ancestry genetic generalised epilepsy cases, 81 African American genetic generalised epilepsy cases, 195 genetic generalised epilepsy cases, 3,277 European ancestry focal epilepsy cases, 222 African American focal epilepsy cases, 487 Han Chinese ancestry focal epilepsy cases, 1,324 focal epilepsy cases, up to 17,441 European ancestry controls, up to 2,843 African American controls, up to 2,875 Han Chinese ancestry controls, up to 2,998 controls	NA	4p12	GABRA2	rs535066-G	0.4	2E-7	(All epilepsy)	1.1	[1.05-1.16]	Affymetrix, Illumina [NR] (imputed)	N
938	chr4	46285949	46285950	rs514465	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	4p12	GABRA2	rs514465-A	0.566	2E-18		0.0104	[0.008-0.0128] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
938	chr4	46329885	46329886	rs279846	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	4p12		rs279846-C	0.541	7E-10		0.007	[0.005-0.009] unit increase	NR [NR] (imputed)	N
938	chr4	46374296	46374297	rs139881548	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	4p12	AC095060.1	rs139881548-C	0.984	7E-6		0.222	[0.13-0.32] unit increase	Affymetrix, Illumina [7374092] (imputed)	N
938	chr4	46397616	46397617	rs11943905	30531953	International League Against Epilepsy Consortium on Complex Epilepsies	2018-12-10	Nat Commun	Genome-wide mega-analysis identifies 16 loci and highlights diverse biological mechanisms in the common epilepsies.	Generalized epilepsy	3,708 European ancestry cases, 61 African American cases, 24,218 European ancestry controls, 2,584 African American controls	NA	4p12	GABRA2	rs11943905-T	0.27	4E-8		5.5	NR unit increase	Affymetrix, Illumina [~ 5000000] (imputed)	N
939	chr4	46400330	46400331	rs1025852	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	4p12	NR	rs1025852-?	NR	1E-6		4.817	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
939	chr4	46414111	46414112	rs147028191	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	4p12	Intergenic	rs147028191-A	NR	1E-9	(between families)	6.062	unit increase	Affymetrix [up to 15107142] (imputed)	N
939	chr4	46444333	46444334	rs184665953	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4p12	Intergenic	rs184665953-G	0.999	3E-6	(AA)	0.281	unit increase	Illumina [NR] (imputed)	N
940	chr4	46595622	46595623	rs12511987	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	4p12	GABRA2	rs12511987-T	0.8191	3E-11		0.2153	[0.15-0.28] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
941	chr4	46691243	46691244	rs183757472	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	4p12	Intergenic	rs183757472-A	NR	1E-9	(between families)	6.062	unit decrease	Affymetrix [up to 15107142] (imputed)	N
941	chr4	46697127	46697128	rs116769983	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	4p12	NR	rs116769983-?	NR	6E-6		4.536	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
941	chr4	46732289	46732290	rs189578969	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4p12	Intergenic	rs189578969-T	0.999	5E-6	(AA)	1.509	NR unit increase	Illumina [NR] (imputed)	N
941	chr4	46769375	46769376	rs193022444	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4p12	COX7B2	rs193022444-C	0.999	4E-6	(AA)	1.592	NR unit increase	Illumina [NR] (imputed)	N
942	chr4	46823633	46823634	rs11726563	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine - clinic-based	5,175 European ancestry clinic-based cases, 13,972 European ancestry clinic-based controls	NA	4p12	intergenic	rs11726563-?	0.84	8E-6		1.16	[1.09-1.23]	Affymetrix, Illumina [~ 2300000] (imputed)	N
942	chr4	46873110	46873111	rs62305210	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-2 receptor antagonist levels	3,677 Finnish ancestry individuals	NA	4p12	NR	rs62305210-G		7E-6		0.1803	[0.1-0.26] SD units increase	NR [10700000] (imputed)	N
942	chr4	46888115	46888116	rs7679715	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	4p12	NR	rs7679715-?	NR	2E-6		4.772	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
943	chr4	46940375	46940376	rs713287	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Problematic alcohol use (MTAG)	972,915 European ancestry individuals	NA	4p12	NR	rs713287-C	0.523	1E-8		0.01169676	[0.0077-0.0157] unit increase	Affymetrix [10613246] (imputed)	N
943	chr4	46943686	46943687	rs17641411	28078323	Raj T	2016-12-21	Neurol Genet	Genetic architecture of age-related cognitive decline in African Americans.	Cognitive decline (age-related)	3,964 African American ancestry individuals.	NA	4p12	COX7B2, GABRA4	rs17641411-?		5E-7		0.026	unit decrease	Illumina [13900000] (imputed)	N
943	chr4	46949769	46949770	rs1160093	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	4p12	Intergenic	rs1160093-C	0.4106	3E-11	(MTAG)	0.0111	[0.0078-0.0144] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
943	chr4	46949769	46949770	rs1160093	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	4p12	Intergenic	rs1160093-G	0.5894	5E-8		0.0126	[0.0081-0.0171] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
943	chr4	46960559	46960560	rs139704190	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	4p12	NR	rs139704190-?	NR	1E-6		0.6016	[0.35-0.85] unit increase	Illumina [at least 560000] (imputed)	N
943	chr4	46968049	46968050	rs2055942	23937595	Al Safar HS	2013-08-13	Ann Hum Genet	A genome-wide search for type 2 diabetes susceptibility genes in an extended Arab family.	Type 2 diabetes	66 Arab ancestry cases and 112 Arab ancestry controls from one extended family	116 Arab ancestry cases, 199 Arab ancestry controls	4p12	GABRA4, COX7B2	rs2055942-?	NR	1E-6				Illumina [443502]	N
943	chr4	46997912	46997913	rs2055940	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	4p12		rs2055940-A	0.3215	5E-8		0.0082	[0.0053-0.0111] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
943	chr4	46997912	46997913	rs2055940	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	4p12	Intergenic	rs2055940-A	0.3215	3E-9	(MTAG)	0.0083	[0.0056-0.011] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
943	chr4	47003075	47003076	rs1159315	30343302	Kim SH	2018-10-19	Gynecol Obstet Invest	High Genetic Risk Scores of ASIC2, MACROD2, CHRM3, and C2orf83 Genetic Variants Associated with Polycystic Ovary Syndrome Impair Insulin Sensitivity and Interact with Energy Intake in Korean Women.	Polycystic ovary syndrome	182 Korean ancestry cases, 240 Korean ancestry controls	NA	4p12	GABRA4	rs1159315-G	0.3655	2E-7		1.117	NR unit increase	Affymetrix [NR]	N
943	chr4	47004036	47004037	rs1512144	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	4p12	Intergenic	rs1512144-A	0.3863	4E-8	(MTAG)	0.0129	[0.0082-0.0176] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
943	chr4	47004036	47004037	rs1512144	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	4p12	NR	rs1512144-?	NR	5E-6		4.557	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
943	chr4	47036984	47036985	rs12108623	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	4p12	Intergenic	rs12108623-T	0.4731	4E-8		0.0107	[0.0068-0.0146] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
943	chr4	47039314	47039315	rs13116355	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	4p12	GABRB1	rs13116355-A	0.671	5E-14		0.0095	[0.007-0.012] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
943	chr4	47039314	47039315	rs13116355	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	4p12	GABRB1	rs13116355-A	0.6679	7E-12		0.014133557	[0.01-0.018] unit decrease	Illumina [9339358] (imputed)	N
943	chr4	47039545	47039546	rs7672943	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	4p12	Intergenic	rs7672943-T	0.47	1E-9	(MTAG)	0.0109	[0.0074-0.0144] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
944	chr4	47081878	47081879	rs182864240	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		GABRB1	rs182864240-?	NR	3E-8	(female)	0.354443	[NR] unit increase	Affymetrix [NR] (imputed)	N
944	chr4	47089183	47089184	rs4396968	28806749	Leo PJ	2017-08-14	PLoS Genet	Defining the genetic susceptibility to cervical neoplasia-A genome-wide association study.	Cervical cancer	2,866 European ancestry cases, 6,481 European ancestry controls	NA	4p12	GABRB1	rs4396968-T	NR	1E-6		1.26	[NR]	Illumina [10863230] (imputed)	N
945	chr4	47199987	47199988	rs116229101	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	4p12		rs116229101-C	0.937	8E-10		0.015	[0.011-0.019] unit increase	NR [NR] (imputed)	N
945	chr4	47265589	47265590	rs7672100	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	4p12	NR	rs7672100-?	NR	3E-6		0.0081376	[0.0047-0.0115] unit decrease	Affymetrix [805426] (imputed)	N
945	chr4	47272391	47272392	rs10026884	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	4p12	COMMD8	rs10026884-A	0.6528	4E-8		0.0149048725	[0.0096-0.0202] unit increase	Affymetrix [~ 11515000] (imputed)	N
945	chr4	47276183	47276184	rs17539515	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial squamous cell lung carcinoma	367 European ancestry cases, 31,563 European ancestry controls	NA	4p12	GABRB1	rs17539515-C	0.007	5E-6		5.41	[2.62-11.17]	Illumina [7959153] (imputed)	N
945	chr4	47280555	47280556	rs13127214	29317602	Hall LS	2018-01-10	Transl Psychiatry	Genome-wide meta-analyses of stratified depression in Generation Scotland and UK Biobank.	Major depressive disorder	6,997 European ancestry female cases, 16,172 European ancestry female controls, 3,852 European ancestry male cases, 16,034 European ancestry male controls	NA	4p12	GABRB1	rs13127214-C	NR	7E-6	(males)	0.19	[0.11-0.27] unit increase	Affymetrix, Illumina [7105178] (imputed)	N
946	chr4	47373670	47373673	rs148121703	28753643	Yeo A	2017-07-28	PLoS One	Pharmacogenetic meta-analysis of baseline risk factors, pharmacodynamic, efficacy and tolerability endpoints from two large global cardiovascular outcomes trials for darapladib.	Moderate or severe diarrhoea in darapladib-treated cardiovascular disease (time to event)	212 European ancestry cases	NA	4p12	GABRB1	rs148121703-C	0.0116	3E-8		14.93	[5.75-38.76]	Affymetrix, Illumina [9334585] (imputed)	N
946	chr4	47375626	47375627	rs4695224	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	4p12		rs4695224-A	0.29011	3E-7		0.038185	[0.024-0.053] unit increase	Affymetrix [15580782] (imputed)	N
946	chr4	47395852	47395853	rs6825556	30353303	Seo M	2018-10-23	J Mol Med (Berl)	Genomics and response to long-term oxygen therapy in chronic obstructive pulmonary disease.	Response to long-term oxygen therapy in chronic obstructive pulmonary disease	290 European ancestry individuals	NA	4p12	NR	rs6825556-?	NR	8E-6				Illumina [5946283] (imputed)	N
946	chr4	47408708	47408709	rs6289	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	4p12	GABRB1	rs6289-G	0.169	5E-6	(Weight change )	0.03	[NR] kg/y increase	Illumina [899892]	N
946	chr4	47415811	47415812	rs16860198	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Longevity	up to 482,000 European ancestry individuals	NA	4p12	NR	rs16860198-C	NR	9E-6		0.01021	[0.0057-0.0147] unit increase	Illumina [~ 540852]	N
947	chr4	47512363	47512364	rs73237070	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Fourth ventricle volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	4p12	ATP10D	rs73237070-?		6E-6				Illumina [4322238] (imputed)	N
947	chr4	47545140	47545141	rs35818294	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	4p12	ATP10D	rs35818294-C	0.78742	8E-40	(glycosyl-N-palmitoyl-sphingosine (d18:1/16:0))	0.361	[0.31-0.41] unit decrease	Illumina [13039987] (imputed)	N
947	chr4	47545140	47545141	rs35818294	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	4p12	ATP10D	rs35818294-C	0.78742	3E-24	(glycosyl ceramide (d18:1/20:0, d16:1/22:0)*)	0.282	[0.23-0.34] unit decrease	Illumina [13039987] (imputed)	N
947	chr4	47545140	47545141	rs35818294	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	4p12	ATP10D	rs35818294-C	0.78742	1E-25	(glycosyl ceramide (d18:2/24:1, d18:1/24:2)*)	0.286	[0.23-0.34] unit decrease	Illumina [13039987] (imputed)	N
947	chr4	47551862	47551863	rs13106975	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	4p12	ATP10D	rs13106975-T	0.6761	6E-10	(HexCer d18:1/18:0)	0.1047	[0.071-0.138] unit decrease	Illumina [~ 47000000] (imputed)	N
947	chr4	47551862	47551863	rs13106975	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	4p12	ATP10D	rs13106975-T	0.6761	3E-15	(HexCer d18:1/16:0)	0.1185	[0.089-0.148] unit decrease	Illumina [~ 47000000] (imputed)	N
947	chr4	47551862	47551863	rs13106975	22359512	Demirkan A	2012-02-16	PLoS Genet	Genome-wide association study identifies novel loci associated with circulating phospho- and sphingolipid concentrations.	Sphingolipid levels	4,034 European ancestry individuals	NA	4p12	ATP10D	rs13106975-?	NR	2E-19	(levels)	0.0	[0.70-2.0] % increase	Illumina [NR] (imputed)	N
947	chr4	47559261	47559262	rs6827604	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	4p12	ATP10D	rs6827604-A	0.504317	1E-15	(glycosyl-N-stearoyl-sphingosine (d18:1/18:0))	0.181	[0.14-0.23] unit decrease	Illumina [13039987] (imputed)	N
947	chr4	47563447	47563448	rs10938494	19798445	Hicks AA	2009-10-02	PLoS Genet	Genetic determinants of circulating sphingolipid concentrations in European populations.	Sphingolipid levels	4,110 European ancestry individuals	NA	4p12	ATP10D	rs10938494-A	0.23	8E-19	(GluCer)	0.06	[0.04-0.07] unit increase	Illumina [318237]	N
947	chr4	47565355	47565356	rs148836387	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Alanine aminotransferase levels in excessive alcohol consumption	951 individuals	NA	4p12	NR	rs148836387-?	NR	4E-6		0.0726	[0.042-0.104] unit increase	Illumina [~ 7800000] (imputed)	N
947	chr4	47575901	47575902	rs11319483	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	4p12	ATP10D	rs11319483-A	0.6637	9E-15	(HexCer d18:1/25:0)	0.1295	[0.096-0.163] unit decrease	Illumina [~ 47000000] (imputed)	N
947	chr4	47575901	47575902	rs11319483	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	4p12	ATP10D	rs11319483-A	0.6637	6E-16	(HexCer d18:1/23:0)	0.1323	[0.1-0.165] unit decrease	Illumina [~ 47000000] (imputed)	N
947	chr4	47575901	47575902	rs11319483	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	4p12	ATP10D	rs11319483-A	0.6637	5E-15	(HexCer d18:1/26:0)	0.1313	[0.098-0.165] unit decrease	Illumina [~ 47000000] (imputed)	N
947	chr4	47575901	47575902	rs11319483	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	4p12	ATP10D	rs11319483-A	0.6637	4E-8	(HexCer d18:2/24:1)	0.0937	[0.06-0.127] unit decrease	Illumina [~ 47000000] (imputed)	N
947	chr4	47575901	47575902	rs11319483	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	4p12	ATP10D	rs11319483-A	0.6637	3E-8	(HexCer d18:2/16:0)	0.0765	[0.049-0.104] unit decrease	Illumina [~ 47000000] (imputed)	N
947	chr4	47575901	47575902	rs11319483	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	4p12	ATP10D	rs11319483-A	0.6637	2E-17	(HexCer d18:1/24:1)	0.1479	[0.11-0.18] unit decrease	Illumina [~ 47000000] (imputed)	N
947	chr4	47575901	47575902	rs11319483	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	4p12	ATP10D	rs11319483-A	0.6637	2E-16	(HexCer d18:1/24:0)	0.1328	[0.1-0.16] unit decrease	Illumina [~ 47000000] (imputed)	N
948	chr4	47580436	47580437	rs4342163	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	4p12	ATP10D	rs4342163-T	0.3346	4E-13	(HexCer d18:1/22:0)	0.1204	[0.088-0.153] unit increase	Illumina [~ 47000000] (imputed)	N
948	chr4	47580436	47580437	rs4342163	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	4p12	ATP10D	rs4342163-T	0.3346	2E-8	(HexCer d18:2/24:0)	0.0931	[0.06-0.126] unit increase	Illumina [~ 47000000] (imputed)	N
949	chr4	47768714	47768715	rs145263584	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	4p12	CORIN	rs145263584-T	0.013544754141606	5E-8	(F_Desulfovibrionaceae_HB)	1.26419	[0.81-1.72] unit decrease	Illumina [7711310] (imputed)	N
949	chr4	47795822	47795823	rs75424485	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota (beta diversity)	858 Metropolitan French ancestry individuals	NA	4p12	NR	rs75424485-A	0.047	9E-7	(Bray-Curtis metric)	4.7760553	NR z-score increase	Illumina [5293637] (imputed)	N
950	chr4	47886013	47886014	rs17463708	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Small vessel stroke	333 Indian ancestry cases, 2,154 Indian ancestry controls	NA	4p12		rs17463708-?	NR	6E-6		0.92544454	[0.894932640696773-0.95699676256619]	Illumina [7827597] (imputed)	N
950	chr4	47919216	47919217	rs61551816	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4p12	NR	rs61551816-G	0.01045	1E-8	(S100A9)	0.2676	NR unit decrease	Illumina [1671387] (imputed)	N
950	chr4	47963737	47963738	rs12499841	33332786	Zhang Y	2020-12-15	Spine (Phila Pa 1976)	Genome-Wide Association Analysis Across 16,956 Patients Identifies a Novel Genetic Association Between BMP6, NIPAL1, CNGA1 and Spondylosis.	Spondylosis	4,434 European ancestry cases, 9,416 European ancestry controls	NA	4p12	NIPAL1, CNGA1	rs12499841-G	NR	4E-7		1.03	[1.018- 1.042]	Illumina [6740241] (imputed)	N
951	chr4	48019322	48019323	rs98270	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	4p12	NIPAL1	rs98270-A	0.362	4E-8		0.021718	[0.014-0.029] mg/dL increase	Affymetrix, Illumina [8217339] (imputed)	N
951	chr4	48019527	48019528	rs321635	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	4p12	NIPAL1	rs321635-A	0.813869	1E-31	(glycosyl-N-(2-hydroxynervonoyl)-sphingosine (d18:1/24:1(2OH))*)	0.342	[0.29-0.4] unit decrease	Illumina [13039987] (imputed)	N
951	chr4	48028096	48028097	rs11733284	27899376	Nakayama A	2016-11-29	Ann Rheum Dis	GWAS of clinically defined gout and subtypes identifies multiple susceptibility loci that include urate transporter genes.	Renal underexcretion gout	619 Japanese ancestry cases, 1,213 Japanese ancestry controls	696 Japanese ancestry cases, 1,268 Japanese ancestry controls	4p12	NIPAL1	rs11733284-A	0.281	1E-8		1.34	[1.21-1.49]	Illumina [570442]	N
951	chr4	48028096	48028097	rs11733284	27899376	Nakayama A	2016-11-29	Ann Rheum Dis	GWAS of clinically defined gout and subtypes identifies multiple susceptibility loci that include urate transporter genes.	Gout	945 Japanese ancestry cases, 1,213 Japanese ancestry controls	1,396 Japanese ancestry cases, 1,268 Japanese ancestry controls, 1,319 European ancestry cases, 514 European ancestry controls, 971 Polynesian ancestry cases, 565 Polynesian ancestry controls	4p12	NIPAL1	rs11733284-A	0.281	9E-7	(Japanese)	1.24	[1.14-1.36]	Illumina [570442]	N
951	chr4	48036616	48036617	rs142274555	30194396	Rafnar T	2018-09-07	Nat Commun	Variants associating with uterine leiomyoma highlight genetic background shared by various cancers and hormone-related traits.	Uterine fibroids	16,595 European ancestry cases, 523,330 European ancestry controls	NA	4p12	NIPAL1	rs142274555-C	0.00797	4E-8		1.68	[1.4-2.02]	Affymetrix, Illumina [43421991] (imputed)	N
951	chr4	48038715	48038716	rs11722463	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	4p12	ATP10D	rs11722463-A	0.35	5E-6	(HexCer d18:2/24:0, conditioned on rs11319483)	0.082	[0.048-0.116] unit increase	Illumina [~ 47000000] (imputed)	N
951	chr4	48043944	48043945	rs13145218	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	4p12	NIPAL1, TXK	rs13145218-A	0.21	1E-8		5.67	z-score increase	Affymetrix [4314223] (imputed)	N
951	chr4	48058432	48058433	rs199501877	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	4p12	NR	rs199501877-G	0.4866	4E-7	(EA)	0.0315	[0.019-0.044] unit decrease	Illumina [~ 11800000] (imputed)	N
951	chr4	48059639	48059640	rs9685555	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	4p12		rs9685555-A	NR	1E-9		0.0136	[0.0093-0.0179] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
951	chr4	48072160	48072161	rs34900354	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	4p12	TXK	rs34900354-T	0.274658	2E-20		0.023614448	[0.019-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
951	chr4	48072160	48072161	rs34900354	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	4p12	TXK	rs34900354-T	0.274629	7E-17		0.02152304	[0.016-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
951	chr4	48076247	48076248	rs2279965	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4p12	NR	rs2279965-A	0.720362	5E-17				Affymetrix, Illumina [17210439] (imputed)	N
951	chr4	48076247	48076248	rs2279965	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	4p12	NR	rs2279965-A	0.719132	4E-19		0.019208	[0.015-0.023] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
951	chr4	48089457	48089458	rs2013231	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	4p12	TXK	rs2013231-T	0.2378	5E-11		0.02874126	[0.02-0.037] unit decrease	Affymetrix [~ 2500000] (imputed)	N
952	chr4	48127261	48127262	rs6837324	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	4p12	TXK	rs6837324-G	NR	1E-11		1.0665529	NR	Affymetrix, Illumina [8278136] (imputed)	N
952	chr4	48220838	48220839	rs2664035	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	4p11	TEC	rs2664035-A	NR	4E-6		0.0609339	[0.0055-0.1164] unit increase	Illumina [8380626] (imputed)	N
952	chr4	48220838	48220839	rs2664035	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	4p11	TEC	rs2664035-A	0.4	2E-6	(EA)	0.07389	[0.043-0.105] unit increase	Illumina [8380626] (imputed)	N
952	chr4	48220838	48220839	rs2664035	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	4p11	TEC	rs2664035-A	0.4	3E-8	(EA)	1.08	[1.05-1.11]	Affymetrix, Illumina [up to 9739303] (imputed)	N
952	chr4	48220838	48220839	rs2664035	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	4p11	TEC	rs2664035-A	0.37	1E-7		1.07	[1.04-1.10]	Affymetrix, Illumina [up to 9739303] (imputed)	N
953	chr4	48301690	48301691	rs17471509	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	4p11	TEC, SLAIN2	rs17471509-A		9E-7		0.191	unit increase	Affymetrix [at least 2696785] (imputed)	N
953	chr4	48301690	48301691	rs17471509	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	4p11	TEC, SLAIN2	rs17471509-A		4E-8		0.143	unit increase	Affymetrix [at least 2696785] (imputed)	N
953	chr4	48363244	48363245	rs7438704	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	4p11	NR	rs7438704-G	0.64	9E-7	(EA)	1.0524054		Affymetrix, Illumina [~ 9000000] (imputed)	N
953	chr4	48363244	48363245	rs7438704	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	4p11	NR	rs7438704-G	0.64	3E-11	(EA)	1.0875221	[1.06-1.11]	Affymetrix, Illumina [~ 9000000] (imputed)	N
953	chr4	48363982	48363983	rs6837335	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Crohn's disease	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls	4p11	TXK, TEC, SLC10A4	rs6837335-G	0.647	2E-8		1.086	[1.049-1.123]	Affymetrix, Illumina [1230000] (imputed)	N
954	chr4	48376355	48376356	rs551980034	30194396	Rafnar T	2018-09-07	Nat Commun	Variants associating with uterine leiomyoma highlight genetic background shared by various cancers and hormone-related traits.	Uterine fibroids	16,595 European ancestry cases, 523,330 European ancestry controls	NA	4p11	SLAIN2	rs551980034-T	0.00288	4E-12		2.71	[2.05-3.57]	Affymetrix, Illumina [43421991] (imputed)	N
954	chr4	48376801	48376802	rs12649527	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	4p11	TEC	rs12649527-?	NR	2E-6	(salicylurate)	0.68793803	[0.41-0.97] unit decrease	Affymetrix [at least 2500000] (imputed)	N
954	chr4	48445815	48445816	rs184148144	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	4p11	SLAIN2, SLC10A4, ZAR1, FRYL	rs184148144-T	0.833	1E-6		1.08058	[1.05-1.11]	NR [9372253] (imputed)	N
954	chr4	48466780	48466781	rs16861305	30279531	Baselmans BML	2018-10-02	Sci Rep	A genetic perspective on the relationship between eudaimonic -and hedonic well-being.	Eudaimonic well-being	108,154 British ancestry individuals	NA	4p11	NR	rs16861305-A	0.542579	8E-6		4.45921	[NR] z score increase	Affymetrix [~ 8600000] (imputed)	N
954	chr4	48470295	48470296	rs13110633	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	4p11	NR	rs13110633-C	NR	5E-6		1.06	[NR]	Illumina [7158791] (imputed)	N
954	chr4	48476538	48476539	rs6838613	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	4p11		rs6838613-G	NR	2E-9		0.0098	[0.0067-0.0129] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
954	chr4	48476538	48476539	rs6838613	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	4p11		rs6838613-G	NR	2E-8		0.0094	[0.0061-0.0127] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
954	chr4	48476538	48476539	rs6838613	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	4p11		rs6838613-G	0.517291	3E-9		0.013227567	[0.0089-0.0176] unit increase	Affymetrix [93095623] (imputed)	N
954	chr4	48479735	48479736	rs78298626	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	4p11	intergenic	rs78298626-C	NR	3E-6	(AA)			Illumina [up to 11995908] (imputed)	N
954	chr4	48479735	48479736	rs78298626	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	4p11	intergenic	rs78298626-C	NR	3E-6				Illumina [up to 11995908] (imputed)	N
954	chr4	48485249	48485251	rs35118024	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	4p11		rs35118024-C	NR	6E-10		0.0124	[0.0085-0.0163] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
954	chr4	48485249	48485251	rs35118024	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	4p11		rs35118024-C	NR	6E-11		0.0131	[0.0092-0.017] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
954	chr4	48486597	48486598	rs11945562	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4p11	NR	rs11945562-T	0.464832	9E-11				Affymetrix, Illumina [24558453] (imputed)	N
954	chr4	48486597	48486598	rs11945562	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	4p11	NR	rs11945562-T	0.485004	3E-12		0.012891	[0.0093-0.0165] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
954	chr4	48492768	48492769	rs74929644	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4p11	NR	rs74929644-T	0.485725	2E-12				Affymetrix, Illumina [24653286] (imputed)	N
954	chr4	48492768	48492769	rs74929644	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	4p11	NR	rs74929644-T	0.461381	7E-14		0.013829	[0.01-0.017] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
955	chr4	48498289	48498290	rs10031777	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	4p11		rs10031777-?	NR	5E-34				NR [~ 8900000] (imputed)	N
955	chr4	48541031	48541032	rs12503599	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	4p11		rs12503599-G	NR	3E-28		0.0143	[0.012-0.017] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
955	chr4	48564661	48564662	rs150266139	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	4p11	FRYL	rs150266139-T	0.00355099999999997	2E-10		0.12963209	[0.09-0.17] unit increase	Affymetrix [93095623] (imputed)	N
955	chr4	48590605	48590606	rs13127730	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	4p11	FRYL	rs13127730-T	0.504205	1E-11		0.01493028	[0.011-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
955	chr4	48612595	48612596	rs776601	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	4p11		rs776601-?	NR	2E-11				NR [~ 8900000] (imputed)	N
956	chr4	48656325	48656326	rs2102397	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	4p11		rs2102397-C	0.45	3E-24		10.16	z score increase	Affymetrix [9061022] (imputed)	N
956	chr4	48656325	48656326	rs2102397	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	4p11		rs2102397-C	NR	1E-12		0.0152	[0.011-0.019] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
956	chr4	48656325	48656326	rs2102397	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 3)	19,670 European ancestry individuals	NA	4p11		rs2102397-?	NR	2E-8				NR [9705931] (imputed)	N
956	chr4	48686956	48686957	rs10049761	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	4p11		rs10049761-G	0.45	3E-13		7.32	z score increase	Affymetrix [9061022] (imputed)	N
956	chr4	48686956	48686957	rs10049761	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	4p11	NR	rs10049761-G	0.4986	2E-14				NR [9056863] (imputed)	N
956	chr4	48686956	48686957	rs10049761	29773799	Horikoshi M	2018-05-17	Nat Commun	Elucidating the genetic architecture of reproductive ageing in the Japanese population.	Menopause (age at onset)	43,861 Japanese ancestry women	32,545 European ancestry women	4p11	ZAR1	rs10049761-T	0.36	4E-15				Illumina [at least 532488] (imputed)	N
956	chr4	48686956	48686957	rs10049761	29773799	Horikoshi M	2018-05-17	Nat Commun	Elucidating the genetic architecture of reproductive ageing in the Japanese population.	Menopause (age at onset)	43,861 Japanese ancestry women	32,545 European ancestry women	4p11	ZAR1	rs10049761-T	0.36	3E-15	(japanese)	0.22	[0.16-0.28] year increase	Illumina [at least 532488] (imputed)	N
956	chr4	48687350	48687351	rs1996422	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	4p11		rs1996422-G	0.286126	3E-11		0.0149386	[0.011-0.019] unit increase	Illumina [13479295] (imputed)	N
956	chr4	48687350	48687351	rs1996422	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	4p11	FRYL	rs1996422-?	NR	1E-15		0.025489407	[0.019-0.032] unit increase	Illumina [27896057] (imputed)	N
956	chr4	48707574	48707574	rs35570215	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	4p11		rs35570215-TA	NR	4E-11		0.015	[0.01-0.02] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
956	chr4	48720193	48720194	rs955683	32339537	Roberts V	2020-04-24	J Invest Dermatol	Genome wide association study identifies genetic associations with perceived age.	Youthful appearance (self-reported)	423,992 European ancestry individuals	NA	4p11	FRYL	rs955683-T	0.486118	2E-9		1.0266485	NR	Affymetrix [~ 9600000] (imputed)	N
956	chr4	48720732	48720733	rs115097924	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Scarlet fever	6,812 European ancestry cases, 113,837 European ancestry controls	NA	4p11	NR	rs115097924-?	NR	3E-6		0.2891	[0.17-0.41] unit increase	Illumina [at least 560000] (imputed)	N
957	chr4	48782248	48782249	rs58185614	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	4p11		rs58185614-C	NR	8E-20		0.0346	[0.027-0.042] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
957	chr4	48782248	48782249	rs58185614	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	4p11		rs58185614-C	0.263106	8E-20		0.0345626	[0.027-0.042] unit decrease	Illumina [13478928] (imputed)	N
957	chr4	48782248	48782249	rs58185614	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	145,648 East Asian ancestry individuals	NA	4p11	NR	rs58185614-T	0.758227	8E-16		0.036569	[0.028-0.045] SD units increase	Affymetrix, Illumina [16710488] (imputed)	N
957	chr4	48782248	48782249	rs58185614	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Platelet count	108,208 Japanese ancestry individuals	NA	4p11	FRYL	rs58185614-?	NR	9E-16		0.04039	[0.031-0.05] unit decrease novel	Illumina [6108953] (imputed)	N
957	chr4	48782322	48782323	rs150305233	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	4p11	FRYL	rs150305233-G	0.015797	7E-15		0.07361111	[0.055-0.092] unit increase	Affymetrix [93095623] (imputed)	N
957	chr4	48789268	48789269	rs13141523	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	4p11	OCIAD1	rs13141523-A	0.4113	5E-8		0.1948	[0.12-0.26] mmHg decrease	Affymetrix [NR] (imputed)	N
957	chr4	48814686	48814687	rs7665209	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Age at menopause	approximately 143,000 European ancestry individuals	NA	4p11		rs7665209-?	NR	7E-14				NR [~ 8900000] (imputed)	N
957	chr4	48875925	48875926	rs7687992	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	4p11		rs7687992-?	NR	1E-11				NR [~ 8900000] (imputed)	N
957	chr4	48880626	48880627	rs62310934	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	4p11	NR	rs62310934-G	0.3888	1E-10		0.0304	[0.021-0.04] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
958	chr4	48934297	48934298	rs12504699	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	4p11	OCIAD2, CWH43	rs12504699-G		2E-8		0.221	unit increase	Affymetrix [at least 2696785] (imputed)	N
958	chr4	48934297	48934298	rs12504699	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	4p11	OCIAD2, CWH43	rs12504699-G		6E-6		0.109	unit increase	Affymetrix [at least 2696785] (imputed)	N
958	chr4	48940905	48940906	rs1455942	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4p11	NR	rs1455942-G	0.33766	9E-20				Affymetrix, Illumina [24588908] (imputed)	N
958	chr4	48945834	48945835	rs13113577	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	4p11	NR	rs13113577-T	0.450276	1E-15		0.014716	[0.011-0.018] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
958	chr4	48950876	48950877	rs760402913	30194396	Rafnar T	2018-09-07	Nat Commun	Variants associating with uterine leiomyoma highlight genetic background shared by various cancers and hormone-related traits.	Uterine fibroids	16,595 European ancestry cases, 523,330 European ancestry controls	NA	4p11	CWH43	rs760402913-T	0.00298	3E-13		2.79	[2.13-3.66]	Affymetrix, Illumina [43421991] (imputed)	N
958	chr4	48964602	48964603	rs2572353	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	4p11		rs2572353-T	0.433287	8E-11		0.01500801	[0.01-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
959	chr4	49029422	49029423	rs77730715	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (positive Marder score)	1,390 European ancestry cases	NA	4p11		rs77730715-G	NR	5E-6	(GLM)	3.724	[NR] unit increase	Illumina [~ 9000000] (imputed)	N
959	chr4	49039957	49039958	rs55774002	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (PANSS score)	1,390 European ancestry individuals	NA	4p11		rs55774002-C	NR	7E-6	(GLM)	6.2895	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
959	chr4	49062891	49062892	rs11725957	22095909	Lange CM	2011-11-16	Hepatology	Serum ferritin levels are associated with a distinct phenotype of chronic hepatitis C poorly responding to pegylated interferon-alpha and ribavirin therapy.	Response to hepatitis C treatment	707 European ancestry cases	NA	4p11	CWH43	rs11725957-G	NR	8E-6		0.727	[0.41-1.05] ug/L increase	NR [NR]	N
959	chr4	49063871	49063872	rs1051447	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	4p11	CWH43	rs1051447-A	0.707	5E-10		0.0021	[0.0013-0.0029] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
959	chr4	49067322	49067323	rs2605281	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	4p11	NR	rs2605281-G	0.6128	7E-12		0.0283	[0.02-0.036] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
959	chr4	49109113	49109114	rs55916589	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pneumothorax	1,747 European ancestry cases, 475,987 European ancestry controls, 692 East Asian ancestry cases, 176,298 East Asian ancestry controls	NA	4p11		rs55916589-T	NR	1E-8		0.2595	[0.17-0.35] unit decrease	Affymetrix, Illumina [25844290] (imputed)	N
959	chr4	49129048	49129049	rs144819497	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	4p11		rs144819497-A	NR	3E-12		0.0167	[0.012-0.021] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
959	chr4	49151981	49151982	rs28971796	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	4p11	NR	rs28971796-?	NR	5E-8				Affymetrix [~ 8270000] (imputed)	N
960	chr4	49178134	49178135	rs9291340	32737115	Shirai Y	2020-07-31	Ann Rheum Dis	Association of the RPA3-UMAD1 locus with interstitial lung diseases complicated with rheumatoid arthritis in Japanese.	Interstitial lung diseases in rheumatoid arthritis	358 Japanese ancestry cases, 4,550 Japanese ancestry controls	NA	4p11	NR	rs9291340-?	0.32	2E-6		1.65	[1.34-2.02]	Illumina [5934489] (imputed)	N
960	chr4	49215826	49215827	rs4694952	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	4p11	NR	rs4694952-?		2E-9		0.017212	[0.012-0.023] unit increase	Affymetrix [19400418] (imputed)	N
960	chr4	49239097	49239098	rs4235169	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	4p11		rs4235169-C	NR	3E-8		0.0141	[0.0092-0.019] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
961	chr4	49311083	49311084	rs28690107	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Type 2 diabetes	approximately 459,000 European ancestry individuals	NA	4p11		rs28690107-?	NR	1E-7				NR [~ 8900000] (imputed)	N
961	chr4	49313491	49313492	rs12511346	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	4p11		rs12511346-C	NR	1E-12		0.0198	[0.014-0.025] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
986	chr4	52686512	52686513	rs4864890	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	4q12	DCUN1D4	rs4864890-T	0.3064	4E-10		0.0023	[0.0015-0.0031] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
986	chr4	52687938	52687939	rs1910738	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	4q12	DCUN1D4	rs1910738-T	0.709	2E-10		0.0023	[0.0015-0.0031] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
987	chr4	52705082	52705083	rs111949202	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	4q12	DCUN1D4	rs111949202-A	0.9631	1E-6		0.0968	[0.058-0.136] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
987	chr4	52711376	52711377	rs147833373	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial squamous cell lung carcinoma	367 European ancestry cases, 31,563 European ancestry controls	NA	4q12	DCUN1D4	rs147833373-T	0.006	4E-7		6.77	[3.22-14.23]	Illumina [7959153] (imputed)	N
987	chr4	52776900	52776901	rs6554060	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	4q12		rs6554060-G	NR	4E-8		0.0366	[0.024-0.05] unit increase	Affymetrix, Illumina [25845091] (imputed)	N
987	chr4	52798623	52798624	rs1996617	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	4q12	NR	rs1996617-C	0.3914	7E-13		0.0289	[0.021-0.037] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
987	chr4	52818663	52818664	rs2102278	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	4q12		rs2102278-G	NR	2E-12		0.0121	[0.0088-0.0154] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
987	chr4	52818663	52818664	rs2102278	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	4q12		rs2102278-G	NR	3E-15		0.0106	[0.0081-0.0131] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
987	chr4	52818663	52818664	rs2102278	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	4q12	USP46	rs2102278-G	0.3186	4E-8		1.04	[1.02-1.05]	Affymetrix, Illumina [~ 27000000] (imputed)	N
987	chr4	52820142	52820143	rs7688264	34050765	Zhang L	2021-05-29	J Clin Endocrinol Metab	Joint genome-wide association analyses identified 49 novel loci for age at natural menopause.	Age at menopause	181,219 European ancestry individuals, 43,861 East Asian ancestry individuals	NA	4q12		rs7688264-A	0.29	1E-10		0.09	unit increase	Illumina [2093892] (imputed)	N
987	chr4	52820142	52820143	rs7688264	34050765	Zhang L	2021-05-29	J Clin Endocrinol Metab	Joint genome-wide association analyses identified 49 novel loci for age at natural menopause.	Age at menopause	181,219 European ancestry individuals	NA	4q12		rs7688264-A	0.29	2E-8		0.09	unit increase	Illumina [2398641] (imputed)	N
988	chr4	52845912	52845918	rs112752409	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	4q12		rs112752409-C	NR	5E-13		0.0183	[0.013-0.023] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
988	chr4	52855400	52855401	rs11733359	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q12	NR	rs11733359-T	0.508448	2E-10				Affymetrix, Illumina [24588908] (imputed)	N
988	chr4	52865250	52865251	rs138559094	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	4q12	NR	rs138559094-G	0.984906	6E-11		0.053234	[0.037-0.069] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
988	chr4	52868517	52868518	rs4864836	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	4q12	NR	rs4864836-A	0.563864	7E-12		0.012699	[0.0091-0.0163] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
988	chr4	52932824	52932825	rs3113509	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	4q12		rs3113509-?	NR	5E-9				NR [~ 8900000] (imputed)	N
988	chr4	52936211	52936212	rs201218587	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	4q12		rs201218587-G	0.216354	7E-12		0.0282102	[0.02-0.036] unit decrease	Illumina [13478928] (imputed)	N
989	chr4	52971434	52971435	rs138371993	32701715	Zhang Y	2020-07-21	J Bone Joint Surg Am	PPARGC1B Is Associated with Nontraumatic Osteonecrosis of the Femoral Head: A Genomewide Association Study on a Chart-Reviewed Cohort.	Nontraumatic osteonecrosis of the femoral head	118 European ancestry cases, 56,811 European ancestry controls	NA	4q12	intergenic	rs138371993-G	0.012	2E-8		5.47	[3.02-9.89]	Illumina [3905175] (imputed)	N
989	chr4	52995401	52995402	rs7699031	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	4q12		rs7699031-C	NR	4E-8		0.0106	[0.0069-0.0143] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
989	chr4	53005625	53005626	rs185228201	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	4q12	SPATA18	rs185228201-C	0.0034	6E-6		0.3885	[0.22-0.56] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
989	chr4	53024372	53024373	rs17085552	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q12	NR	rs17085552-A	0.01045	7E-9	(AK1)	0.118	NR unit decrease	Illumina [1671387] (imputed)	N
989	chr4	53029684	53029685	rs10517245	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	4q12	SPATA18, USP46	rs10517245-?	NR	2E-8		0.016803864	[0.011-0.023] unit increase	Illumina [27896057] (imputed)	N
989	chr4	53031514	53031515	rs149787529	30194396	Rafnar T	2018-09-07	Nat Commun	Variants associating with uterine leiomyoma highlight genetic background shared by various cancers and hormone-related traits.	Uterine fibroids	16,595 European ancestry cases, 523,330 European ancestry controls	NA	4q12	SPATA18	rs149787529-T	0.00957	1E-8		1.66	[1.4-1.97]	Affymetrix, Illumina [43421991] (imputed)	N
989	chr4	53048610	53048611	rs74887316	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	4q12		rs74887316-T	NR	3E-11		0.0262	[0.019-0.034] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
989	chr4	53048610	53048611	rs74887316	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Platelet count	108,208 Japanese ancestry individuals	NA	4q12	SPATA18, USP46	rs74887316-?	NR	2E-14		0.04127	[0.031-0.052] unit decrease novel	Illumina [6108953] (imputed)	N
989	chr4	53078281	53078282	rs113033531	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	4q12		rs113033531-C	0.125273	2E-8		0.0184773	[0.012-0.025] unit increase	Illumina [13479295] (imputed)	N
990	chr4	53095138	53095139	rs17474439	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial squamous cell lung carcinoma	367 European ancestry cases, 31,563 European ancestry controls	NA	4q12	NR	rs17474439-T	0.045	2E-6		2.2	[1.59-3.05]	Illumina [7959153] (imputed)	N
990	chr4	53132763	53132764	rs141378038	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Cardio-cerebrovascular disease in dyslipidemia	1,039 Korean ancestry cases, 19,727 Korean ancestry controls	NA	4q12		rs141378038-G	0.01427	8E-6		1.943	[1.45-2.603]	Affymetrix [7975321] (imputed)	N
990	chr4	53134292	53134293	rs17086692	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	4q12	SPATA18	rs17086692-T	0.313425861468874	2E-8		0.0467	[0.03-0.063] unit decrease	NR [5035015] (imputed)	N
990	chr4	53172273	53172274	rs746576110	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28- CD8+ T cell %T cell	3,440 Sardinian (founder/genetic isolate) ancestry individuals	NA	4q12		rs746576110-A	0.0051	3E-8		0.9757	[0.63-1.32] unit decrease	Illumina [18357815] (imputed)	N
990	chr4	53207092	53207093	rs114447556	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	4q12	NR	rs114447556-C	0.9166	8E-11		0.0578	[0.04-0.075] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
990	chr4	53207092	53207093	rs114447556	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	4q12	USP46	rs114447556-T	0.0839	8E-6		1.06	[1.03-1.08]	Affymetrix, Illumina [~ 27000000] (imputed)	N
991	chr4	53245363	53245364	rs145264818	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Cardio-cerebrovascular disease in dyslipidemia	1,039 Korean ancestry cases, 19,727 Korean ancestry controls	NA	4q12		rs145264818-T	0.01439	1E-5		1.934	[1.444-2.591]	Affymetrix [7975321] (imputed)	N
991	chr4	53286871	53286872	rs67073213	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	4q12	NR	rs67073213-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
991	chr4	53287575	53287576	rs6832762	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	4q12	NA	rs6832762-A	0.5093	3E-9		0.0101	[0.0068-0.0134] unit decrease	NR [~ 27400000] (imputed)	N
991	chr4	53304117	53304118	rs7670374	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	4q12	NR	rs7670374-G	NR	4E-6				Affymetrix [~ 8270000] (imputed)	N
991	chr4	53304117	53304118	rs7670374	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Adult onset asthma and/or BMI	33,418 European ancestry cases, 393,186 European ancestry controls, 31,218 European ancestry individuals	NA	4q12	NR	rs7670374-G	NR	5E-10				Affymetrix [~ 8270000] (imputed)	N
991	chr4	53337664	53337665	rs77582856	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial squamous cell lung carcinoma	367 European ancestry cases, 31,563 European ancestry controls	NA	4q12	NR	rs77582856-C	0.013	5E-6		3.66	[2.10-6.40]	Illumina [7959153] (imputed)	N
992	chr4	53380057	53380058	rs140103984	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Cardio-cerebrovascular disease in dyslipidemia	1,039 Korean ancestry cases, 19,727 Korean ancestry controls	NA	4q12		rs140103984-C	0.01531	6E-6		1.928	[1.452-2.56]	Affymetrix [7975321] (imputed)	N
992	chr4	53385196	53385197	rs182141392	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Raoultella abundance in stool	5,959 Finnish ancestry individuals	NA	4q12		rs182141392-C	0.0113732	3E-8		0.189011	[0.12-0.26] unit increase	Illumina [7980478] (imputed)	N
992	chr4	53404296	53404297	rs11737088	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	4q12	RASL11B	rs11737088-?	NR	9E-6	(TAG 58:10)	0.5239645	[0.29-0.76] unit decrease	Affymetrix [at least 2500000] (imputed)	N
992	chr4	53412128	53412129	rs346923	19260141	Zemunik T	2009-02-01	Croat Med J	Genome-wide association study of biochemical traits in Korcula Island, Croatia.	Biochemical measures	898 Korculan (founder/genetic isolate) individuals	NA	4q12	USP46	rs346923-A	0.13	2E-6	(triglycerides)	0.28	[0.17-0.39] mmol/L decrease	Illumina [316730]	N
994	chr4	53633556	53633557	rs189864513	27622933	Li QS	2016-09-13	Transl Psychiatry	Analysis of 23andMe antidepressant efficacy survey data: implication of circadian rhythm and neuroplasticity in bupropion response.	Response to citalopram or escitalopram and depression	2,963 European ancestry responder cases, 191,936 European ancestry healthy controls	NA	4q12	ERVMER34-1, RASL11B	rs189864513-?		8E-7		12.345678	[5.65-27.03]	Illumina [~ 12000000] (imputed)	N
994	chr4	53684281	53684282	rs145734812	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (min-P)	26,502 European ancestry individuals	NA	4q12	COL11A1	rs145734812-?		4E-9				NR [7428630] (imputed)	N
994	chr4	53684281	53684282	rs145734812	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (min-P)	26,502 European ancestry individuals	NA	4q12	AL162431.1, STX6, MR1, IER5	rs145734812-?		1E-8				NR [7428630] (imputed)	N
994	chr4	53702874	53702875	rs6554054	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	4q12	NR	rs6554054-A	0.1436	6E-11	(Superior Parietal)	26.671227	[18.67-34.67] unit decrease	Affymetrix, Illumina [NR]	N
994	chr4	53727999	53728000	rs62336790	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	4q12		rs62336790-C	0.24	2E-28		11.06	z score increase	Affymetrix [9061022] (imputed)	N
994	chr4	53728523	53728524	rs11538878	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	4q12	NR	rs11538878-C	0.2406	1E-17				NR [9056863] (imputed)	N
994	chr4	53728523	53728524	rs11538878	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	4q12		rs11538878-?	NR	2E-22				NR [9705931] (imputed)	N
994	chr4	53732585	53732586	rs8287	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	4q12	USP46, ERVMER34-1, RASL11B, SCFD2	rs8287-?		6E-21				NR [7428630] (imputed)	N
994	chr4	53733983	53733984	rs7670068	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	4q12	PKDCC	rs7670068-?		3E-18				NR [7428630] (imputed)	N
994	chr4	53738410	53738411	rs2200225	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	4q12	NR	rs2200225-A	0.8376	3E-12	(Supramarginal)	23.03185	[16.55-29.51] unit increase	Affymetrix, Illumina [NR]	N
995	chr4	53739855	53739856	rs1047959	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	8,072 individuals	NA	4q12		rs1047959-G	0.26	3E-7				NR [13131314] (imputed)	N
995	chr4	53739855	53739856	rs1047959	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	4q12		rs1047959-G	0.26	2E-49		14.78	z score increase	Affymetrix [9061022] (imputed)	N
995	chr4	53739855	53739856	rs1047959	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	8,072 individuals	NA	4q12		rs1047959-G	0.26	1E-12				NR [13131314] (imputed)	N
995	chr4	53739855	53739856	rs1047959	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	4q12		rs1047959-G	0.26	2E-32		11.87	z score increase	Affymetrix [9061022] (imputed)	N
995	chr4	53739855	53739856	rs1047959	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	4q12	NR	rs1047959-G	0.2452	1E-17				NR [9056863] (imputed)	N
995	chr4	53756999	53757000	rs2898681	20395239	Macgregor S	2010-04-15	Hum Mol Genet	Genome-wide association identifies ATOH7 as a major gene determining human optic disc size.	Optic nerve measurement (cup area)	1,368 European ancestry twins from 666 families	848 European ancestry twins from 531 families	4q12	SCFD2	rs2898681-G	NR	2E-6		0.173	[0.069-0.277] unit increase	Illumina [~ 2740000] (imputed)	N
995	chr4	53759965	53759966	rs188539274	30194396	Rafnar T	2018-09-07	Nat Commun	Variants associating with uterine leiomyoma highlight genetic background shared by various cancers and hormone-related traits.	Uterine fibroids	16,595 European ancestry cases, 523,330 European ancestry controls	NA	4q12	SCFD2	rs188539274-T	0.00397	7E-9		1.74	[1.45-2.08]	Affymetrix, Illumina [43421991] (imputed)	N
995	chr4	53795611	53795612	rs301127	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	4q12		rs301127-?	NR	3E-14				NR [~ 8900000] (imputed)	N
995	chr4	53820154	53820155	rs13104971	21685187	Siedlinski M	2011-06-16	Thorax	Genome-wide association study of smoking behaviours in patients with COPD.	Lifetime average cigarettes per day in chronic obstructive pulmonary disease	3,440 European ancestry cases	NA	4q12	SCFD2	rs13104971-G	0.13	1E-6		0.113	unit increase	Illumina [~ 6300000] (imputed)	N
995	chr4	53833942	53833943	rs182668686	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	4q12	NR	rs182668686-?	NR	2E-8				Illumina [7760689] (imputed)	N
995	chr4	53846583	53846584	rs13120717	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	4q12	NR	rs13120717-C	0.120886	1E-10		0.018121	[0.013-0.024] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
995	chr4	53858947	53858948	rs11735529	31649266	Gallagher CS	2019-10-24	Nat Commun	Genome-wide association and epidemiological analyses reveal common genetic origins between uterine leiomyomata and endometriosis.	Uterine fibroids	20,406 European ancestry cases, 223,918 European ancestry controls	15,068 European ancestry cases, 43,587 European ancestry controls	4q12		rs11735529-C	0.5938	2E-6		0.0517	[0.03-0.073] unit decrease	Affymetrix, Illumina [8662096] (imputed)	N
995	chr4	53860083	53860084	rs3849653	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	4q12	NR	rs3849653-A	0.540807	7E-12		0.0191787	[0.014-0.025] unit increase	Affymetrix [16580851] (imputed)	N
996	chr4	53874588	53874589	rs7688198	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	4q12	SCFD2	rs7688198-A	0.480632	4E-9		0.0134758465	[0.009-0.018] unit decrease	Affymetrix [93095623] (imputed)	N
996	chr4	53879084	53879085	rs4864709	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	4q12	NR	rs4864709-C	0.3711	3E-8		0.001293	[0.00083-0.00175] unit increase	Affymetrix [NR] (imputed)	N
996	chr4	53879084	53879085	rs4864709	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	4q12	NR	rs4864709-C	0.371232	9E-10		0.0195519	[0.013-0.026] unit increase	NR [19129689] (imputed)	N
996	chr4	53887269	53887270	rs765333492	30194396	Rafnar T	2018-09-07	Nat Commun	Variants associating with uterine leiomyoma highlight genetic background shared by various cancers and hormone-related traits.	Uterine fibroids	16,595 European ancestry cases, 523,330 European ancestry controls	NA	4q12	SCFD2	rs765333492-C	0.00314	2E-13		2.76	[2.11-3.6]	Affymetrix, Illumina [43421991] (imputed)	N
996	chr4	53893155	53893156	rs17082301	30738427	Penney ME	2019-02-09	BMC Cancer	A genome-wide association study identifies single nucleotide polymorphisms associated with time-to-metastasis in colorectal cancer.	Metastasis in stage I-III microsatellite instability low/stable colorectal cancer (time to event)	379 European ancestry cases	NA	4q12	NR	rs17082301-A	NR	3E-8	(Cox proportional hazards regression model)	129.98	[23.29-725.52]	Illumina [810622]	N
996	chr4	53912592	53912593	rs12506630	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	4q12	NR	rs12506630-C	0.3734	1E-6	(EA)	0.0323	[0.019-0.045] unit decrease	Illumina [~ 11800000] (imputed)	N
996	chr4	53977260	53977261	rs574753165	28604731	Hammerschlag AR	2017-06-12	Nat Genet	Genome-wide association analysis of insomnia complaints identifies risk genes and genetic overlap with psychiatric and metabolic traits.	Insomnia complaints	12,863 European ancestry male cases, 19,521 European ancestry female cases, 40,776 European ancestry male controls, 39,846 European ancestry female controls	1,983 Icelandic ancestry male cases, 1,791 Icelandic ancestry female cases, 2,064 Icelandic ancestry male controls, 1,727 Icelandic ancestry female controls	4q12	SCFD2	rs574753165-G	0.005	5E-9		5.85	z-score decrease	Affymetrix [at least 12428592] (imputed)	N
997	chr4	54006926	54006927	rs183241934	30194396	Rafnar T	2018-09-07	Nat Commun	Variants associating with uterine leiomyoma highlight genetic background shared by various cancers and hormone-related traits.	Uterine fibroids	16,595 European ancestry cases, 523,330 European ancestry controls	NA	4q12	SCFD2	rs183241934-C	0.00414	3E-9		1.96	[1.58-2.44]	Affymetrix, Illumina [43421991] (imputed)	N
997	chr4	54027594	54027595	rs10517281	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	23,963 European ancestry cases, 306,942 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	43,254 European ancestry cases, 1,471,118 European ancestry controls	4q12	SCFD2	rs10517281-A	NR	3E-9		0.0536	unit increase	Illumina [15409056] (imputed)	N
997	chr4	54040653	54040654	rs35660880	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	4q12	NR	rs35660880-C	0.317	4E-7	(IFNgamma_STAT4_of_Monocytes)			Illumina [5084123] (imputed)	N
997	chr4	54086161	54086162	rs6554074	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Intraocular pressure	133,492 European ancestry individuals	NA	4q12	SCFD2	rs6554074-?	NR	3E-8		0.0709	[0.046-0.096] unit decrease	Affymetrix, Illumina [up to 40000000] (imputed)	N
997	chr4	54096013	54096014	rs187857589	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	4q12	NR	rs187857589-?	NR	4E-8				Illumina [7760689] (imputed)	N
998	chr4	54217606	54217607	rs6826663	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q12	NR	rs6826663-C	0.140605	7E-13				Affymetrix, Illumina [24649327] (imputed)	N
998	chr4	54220172	54220173	rs112124703	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	4q12		rs112124703-T	NR	1E-8		0.0157	[0.01-0.021] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
998	chr4	54220469	54220470	rs62325967	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	4q12		rs62325967-A	NR	1E-8		0.0171	[0.011-0.023] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
999	chr4	54271610	54271611	rs10434434	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	4q12		rs10434434-C	NR	5E-9		0.0131	[0.0088-0.0174] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
999	chr4	54272658	54272659	rs74416750	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	4q12	AC058822.1	rs74416750-T	0.1497	5E-15		0.0208	[0.016-0.026] unit decrease	Affymetrix [18391927] (imputed)	N
999	chr4	54296119	54296120	rs6554107	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	4q12		rs6554107-?	NR	8E-10				NR [~ 8900000] (imputed)	N
999	chr4	54318413	54318414	rs13142904	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage Migration Inhibitory Factor levels	3,494 Finnish ancestry individuals	NA	4q12	NR	rs13142904-C	NR	3E-7		0.223	[0.14-0.31] SD units increase	NR [10700000] (imputed)	N
999	chr4	54330866	54330867	rs2412488	23725790	Renteria ME	2013-06-03	Twin Res Hum Genet	GWAS of DNA methylation variation within imprinting control regions suggests parent-of-origin association.	DNA methylation (variation)	256 European ancestry individuals	384 European ancestry individuals	4q12	FIP1L1, LNX1	rs2412488-A	0.29	9E-7	(H19-ICR)			Illumina [515966]	N
999	chr4	54332323	54332328	rs745398820	30194396	Rafnar T	2018-09-07	Nat Commun	Variants associating with uterine leiomyoma highlight genetic background shared by various cancers and hormone-related traits.	Uterine fibroids	16,595 European ancestry cases, 523,330 European ancestry controls	NA	4q12	LNX1	rs745398820-G	0.00412	8E-10		2.18	[1.71-2.79]	Affymetrix, Illumina [43421991] (imputed)	N
999	chr4	54340998	54340999	rs62323564	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	4q12	NR	rs62323564-C	0.148831	1E-11		0.018383	[0.013-0.024] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
999	chr4	54352163	54352164	rs56921221	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q12	NR	rs56921221-A	0.147402	2E-13				Affymetrix, Illumina [23114412] (imputed)	N
999	chr4	54352163	54352164	rs56921221	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	4q12	LNX1	rs56921221-G	0.851473	1E-18		0.0228576	[0.018-0.028] unit decrease	NR [13737936] (imputed)	N
999	chr4	54352163	54352164	rs56921221	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	4q12		rs56921221-?	NR	1E-19				NR [~ 8900000] (imputed)	N
999	chr4	54352163	54352164	rs56921221	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	4q12		rs56921221-?	NR	6E-20		0.025981	[0.02-0.032] unit decrease	Affymetrix [20259828] (imputed)	N
999	chr4	54361791	54361792	rs12642437	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	4q12		rs12642437-T	NR	8E-9		0.0087	[0.0058-0.0116] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
999	chr4	54363193	54363194	rs12507563	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	4q12		rs12507563-?	NR	4E-8				NR [~ 8900000] (imputed)	N
999	chr4	54366970	54366971	rs4864766	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	4q12		rs4864766-G	NR	4E-8		0.0107	[0.0068-0.0146] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
999	chr4	54392710	54392711	rs115342620	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (PANSS score)	1,390 European ancestry individuals	NA	4q12		rs115342620-A	NR	9E-6	(GLM)	12.8016	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
1000	chr4	54406875	54406876	rs183993610	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (CGI-S score)	1,390 European ancestry cases	NA	4q12		rs183993610-C	NR	2E-6	(GLM)	0.5537	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
1000	chr4	54410223	54410224	rs1040084	30972912	Wei L	2019-04-10	J Viral Hepat	Genetic variation in FCER1A predicts peginterferon alfa-2a-induced hepatitis B surface antigen clearance in East Asian patients with chronic hepatitis B.	Peginterferon alfa-2a treatment response in chronic hepatitis B infection	up to 1,108 East Asian cases, up to 465 European ancestry cases, up to 63 cases	NA	4q12	LNX1	rs1040084-?		4E-6	(endpoint 3, additive)	2.37	[NR]	Illumina [> 750000]	N
1000	chr4	54410323	54410324	rs1913484	30972912	Wei L	2019-04-10	J Viral Hepat	Genetic variation in FCER1A predicts peginterferon alfa-2a-induced hepatitis B surface antigen clearance in East Asian patients with chronic hepatitis B.	Peginterferon alfa-2a treatment response in chronic hepatitis B infection	up to 1,108 East Asian cases, up to 465 European ancestry cases, up to 63 cases	NA	4q12	Intergenic	rs1913484-?		4E-6	(endpoint 3, dominant)	2.36	[NR]	Illumina [> 750000]	N
1000	chr4	54414695	54414696	rs6820391	25420145	Debette S	2014-11-24	Nat Genet	Common variation in PHACTR1 is associated with susceptibility to cervical artery dissection.	Cervical artery dissection	1,393 European ancestry cases, 14,416 European ancestry controls	659 European ancestry cases, 2,648 European ancestry controls	4q12	LNX1	rs6820391-A	0.29	2E-8		1.24	[1.15-1.34]	Illumina [472862]	N
1000	chr4	54454563	54454564	rs10009930	34586716	Chen J	2021-09-29	Mol Genet Genomic Med	Heritability and genome-wide association study of blood pressure in Chinese adult twins.	Systolic blood pressure	137 Chinese ancestry twins	NA	4q12		rs10009930-?	NR	6E-7				Illumina [7401356] (imputed)	N
1000	chr4	54454563	54454564	rs10009930	34586716	Chen J	2021-09-29	Mol Genet Genomic Med	Heritability and genome-wide association study of blood pressure in Chinese adult twins.	Mean arterial pressure	137 Chinese ancestry twins	NA	4q12		rs10009930-?	NR	5E-6				Illumina [7401356] (imputed)	N
1000	chr4	54478000	54478001	rs114894604	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Megamonas abundance in stool	5,959 Finnish ancestry individuals	NA	4q12		rs114894604-A	0.0302392	4E-8		0.171626	[0.11-0.23] unit increase	Illumina [7980478] (imputed)	N
1000	chr4	54485326	54485327	rs2590816	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	4q12	NR	rs2590816-?	NR	1E-13				Illumina [at least 7383741] (imputed)	N
1000	chr4	54488816	54488817	rs145752200	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,963 Sub-Saharan African ancestry females	NA	4q12		rs145752200-A	0.981845	7E-8		0.0506785	[0.032-0.069] unit decrease	Illumina [13900000] (imputed)	N
1000	chr4	54490486	54490487	rs2616418	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs2616418-G	0.635557	7E-9		0.0524229	[0.034-0.071] decrease	Affymetrix [11014269] (imputed)	N
1000	chr4	54510555	54510555	rs144220715	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	4q12		rs144220715-TGA	NR	3E-8		0.0176	[0.011-0.024] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
1000	chr4	54511912	54511913	rs4864809	26926045	Adhikari K	2016-03-01	Nat Commun	A genome-wide association scan in admixed Latin Americans identifies loci influencing facial and scalp hair features.	Beard thickness	2,922 Latin American individuals	NA	4q12	LNX1	rs4864809-?	NR	1E-8				Illumina [9143600] (imputed)	N
1000	chr4	54517723	54517724	rs17083248	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	4q12	NR	rs17083248-T	0.16	5E-6		1.1	[1.06-1.14]	Illumina [8468885] (imputed)	N
1001	chr4	54527111	54527112	rs2054407	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	4q12		rs2054407-?	NR	8E-8				NR [~ 8900000] (imputed)	N
1001	chr4	54541845	54541846	rs6822736	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	4q12		rs6822736-?	NR	8E-9				NR [~ 8900000] (imputed)	N
1001	chr4	54541845	54541846	rs6822736	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	4q12	NR	rs6822736-C	0.336689	2E-9		0.0196882	[0.013-0.026] unit decrease	NR [19129689] (imputed)	N
1001	chr4	54541845	54541846	rs6822736	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Dementia and core Alzheimer's disease neuropathologic changes	up to 3,887 cases, up to 1,027 controls	NA	4q12	intergenic	rs6822736-C	0.6565	4E-6	(Complete)	0.3637	[0.21-0.52] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1001	chr4	54548346	54548347	rs62323681	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Uterine fibroids	21,024 European ancestry cases, 237,694 European ancestry controls, 14,475 East Asian ancestry cases, 65,733 East Asian ancestry controls	NA	4q12		rs62323681-G	NR	3E-12		0.1606	[0.12-0.21] unit increase	Affymetrix, Illumina [25795146] (imputed)	N
1001	chr4	54550173	54550174	rs62323682	31649266	Gallagher CS	2019-10-24	Nat Commun	Genome-wide association and epidemiological analyses reveal common genetic origins between uterine leiomyomata and endometriosis.	Uterine fibroids	20,406 European ancestry cases, 223,918 European ancestry controls	15,068 European ancestry cases, 43,587 European ancestry controls	4q12	LNX1, PDGFRA	rs62323682-T	0.94	5E-18		1.15	[1.12-1.19]	Affymetrix, Illumina [8662096] (imputed)	N
1001	chr4	54550173	54550174	rs62323682	31649266	Gallagher CS	2019-10-24	Nat Commun	Genome-wide association and epidemiological analyses reveal common genetic origins between uterine leiomyomata and endometriosis.	Uterine fibroids	20,406 European ancestry cases, 223,918 European ancestry controls	15,068 European ancestry cases, 43,587 European ancestry controls	4q12		rs62323682-T	0.9305	5E-18		0.1411	[0.11-0.17] unit decrease	Affymetrix, Illumina [8662096] (imputed)	N
1001	chr4	54558298	54558299	rs991670	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	4q12	RP11-231C18.3, LNX1, RP11-317M11.1	rs991670-T	0.6607	7E-6		0.0322	[0.018-0.046] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1001	chr4	54569982	54569983	rs2668537	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	4q12	NR	rs2668537-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1001	chr4	54579458	54579459	rs73250983	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in diabetes mellitus	153 Korean ancestry cases, 5,161 Korean ancestry controls	NA	4q12		rs73250983-A	0.0303	7E-7		3.012	[1.948-4.657]	Affymetrix [7975321] (imputed)	N
1001	chr4	54580435	54580436	rs4864486	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	4q12		rs4864486-?	NR	8E-9				NR [~ 8900000] (imputed)	N
1001	chr4	54582973	54582974	rs1993838	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	4q12		rs1993838-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1001	chr4	54584522	54584523	rs191692776	30194396	Rafnar T	2018-09-07	Nat Commun	Variants associating with uterine leiomyoma highlight genetic background shared by various cancers and hormone-related traits.	Uterine fibroids	16,595 European ancestry cases, 523,330 European ancestry controls	NA	4q12	LOC100506444	rs191692776-T	0.00412	2E-8		2.03	[1.6-2.59]	Affymetrix, Illumina [43421991] (imputed)	N
1001	chr4	54591398	54591399	rs2616407	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	4q12	intergenic	rs2616407-T	0.811	3E-6		0.0381	[0.022-0.054] unit decrease	NR [8041861] (imputed)	N
1001	chr4	54628994	54628995	rs62297703	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Lateral ventricle volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	4q12	NR	rs62297703-?		3E-6				Illumina [4322238] (imputed)	N
1001	chr4	54651977	54651978	rs4864822	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	4q12		rs4864822-?	NR	7E-14				NR [~ 8900000] (imputed)	N
1001	chr4	54656436	54656437	rs71597855	28672053	Meng W	2017-07-03	Br J Dermatol	A genome-wide association study suggests that MAPK14 is associated with diabetic foot ulcers.	Foot ulcer and neuropathy in diabetes	662 European ancestry type 2 diabetes and neuropathy cases, 37 European ancestry type 1 diabetes and neuropathy cases, 4,250 European ancestry type 1 and type 2 diabetes controls	NA	4q12	NR	rs71597855-?	NR	1E-7		2.678	[1.856-3.863]	Affymetrix, Illumina [6706850] (imputed)	N
1002	chr4	54660065	54660066	rs1498819	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	4q12	CHIC2	rs1498819-?	NR	9E-6	(TAG 58:12)	0.16295728	[0.091-0.235] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1002	chr4	54664019	54664020	rs138682672	29213071	Mendez-Giraldez R	2017-12-06	Sci Rep	GWAS of the electrocardiographic QT interval in Hispanics/Latinos generalizes previously identified loci and identifies population-specific signals.	QT interval	15,997 Hispanic/Latino individuals	NA	4q12	RPL21P44	rs138682672-A	0.01	3E-7		13.16	[8.1-18.22] ms increase	Affymetrix, Illumina [up to 17586686] (imputed)	N
1002	chr4	54671040	54671041	rs6848923	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	4q12	CHIC2	rs6848923-?	NR	2E-6	(anthranilic acid)	0.16042373	[0.094-0.227] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1002	chr4	54676967	54676968	rs725344	25411163	Maitland ML	2014-11-19	Clin Cancer Res	Identification of a variant in KDR associated with serum VEGFR2 and pharmacodynamics of Pazopanib.	Serum VEGFR2 concentration	736 Old Order Amish	NA	4q12	FIP1L1, PDGFRA, KIT, KDR	rs725344-T	0.12	5E-25		1.32	[NR] ng/mL decrease	Affymetrix [549310]	N
1002	chr4	54714867	54714868	rs17083590	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	4q12	CHIC2	rs17083590-?	NR	2E-10	(XS_VLDL_CE)	0.04222313	NR unit decrease	Illumina [609262]	N
1002	chr4	54751897	54751898	rs4398584	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	4q12	FIP1L1, CHIC2, AC110792.1	rs4398584-?		5E-15				NR [7428630] (imputed)	N
1002	chr4	54754774	54754775	rs7686608	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (min-P)	26,502 European ancestry individuals	NA	4q12	TBX15, WARS2	rs7686608-?		5E-11				NR [7428630] (imputed)	N
1002	chr4	54754774	54754775	rs7686608	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (min-P)	26,502 European ancestry individuals	NA	4q12	CRB1, DENND1B	rs7686608-?		2E-10				NR [7428630] (imputed)	N
1003	chr4	54794474	54794475	rs58354223	27611488	Almoguera B	2016-09-09	Am J Respir Crit Care Med	Identification of Four Novel Loci in Asthma in European American and African American Populations.	Asthma	819 African American non-allergic asthma cases, 2,218 African American allergic asthma cases 4,360 African American controls, 808 European American non-allergic asthma cases, 1,464 European American allergic asthma cases, 11,975 European American controls	NA	4q12	PDGFRA	rs58354223-?		1E-6	(EA)	0.235	[0.14-0.33] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1003	chr4	54794474	54794475	rs58354223	27611488	Almoguera B	2016-09-09	Am J Respir Crit Care Med	Identification of Four Novel Loci in Asthma in European American and African American Populations.	Adult asthma	337 African American allergic asthma cases, 321 African American non-allergic asthma cases, 1,367 African American controls, 466 European American allergic asthma cases, 626 European American non-allergic asthma cases, 7,878 European American controls	NA	4q12	PDGFRA	rs58354223-?	NR	1E-6	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1003	chr4	54796219	54796220	rs11725926	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	145,445 East Asian ancestry individuals	NA	4q12		rs11725926-C	0.176521	6E-13		0.0317892	[0.023-0.04] unit decrease	Illumina [13477769] (imputed)	N
1003	chr4	54796219	54796220	rs11725926	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Pulse pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 Japanese ancestry individuals	4q12	CHIC2	rs11725926-T	0.823	5E-16	(East Asian)	0.451	[0.34-0.56] unit increase	Illumina [6200000] (imputed)	N
1003	chr4	54796219	54796220	rs11725926	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Pulse pressure	136,249 Japanese ancestry individuals	NA	4q12	LOC100506444, RPL21P44	rs11725926-?	NR	2E-15		0.0392	[0.029-0.049] unit decrease	Illumina [6108953] (imputed)	N
1003	chr4	54799244	54799245	rs871606	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	4q12		rs871606-C	NR	3E-43		0.0379	[0.033-0.043] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
1003	chr4	54799244	54799245	rs871606	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Pulse pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 Japanese ancestry individuals	4q12	CHIC2	rs871606-T	0.823	7E-13	(Japanese)	0.487	[0.35-0.62] unit increase	Illumina [6200000] (imputed)	N
1003	chr4	54799244	54799245	rs871606	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Pulse pressure x alcohol consumption interaction (2df test)	91,099 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	238,053 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,447 Hispanic ancestry drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic ancestry non-drinkers	4q12	LOC105377655, RPL21P44	rs871606-T	0.9	3E-29	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1003	chr4	54799244	54799245	rs871606	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Pulse pressure x alcohol consumption interaction (2df test)	91,099 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	238,053 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,447 Hispanic ancestry drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic ancestry non-drinkers	4q12	LOC105377655, RPL21P44	rs871606-T	0.87	5E-46	(AA, Asian, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1003	chr4	54799244	54799245	rs871606	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Pulse pressure x alcohol consumption (light vs heavy) interaction (2df test)	56,705 European ancestry heavy and light drinkers, 9,725 African American or Afro-Caribbean heavy and light drinkers, 1,789 Asian ancestry heavy and light drinkers, 4,812 Hispanic or Latin American heavy and light drinkers	42,079 European ancestry heavy drinkers, 217 African American heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic heavy drinkers, 74,756 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	4q12	LOC105377655, RPL21P44	rs871606-T	0.89	6E-12	(AA, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1003	chr4	54799244	54799245	rs871606	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Pulse pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	4q12	CHIC2	rs871606-C	0.103	2E-10	(EA, initial)	0.496	[0.35-0.65] unit decrease	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
1003	chr4	54799244	54799245	rs871606	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	4q12	LNX1-AS2, RPL21P44	rs871606-T		6E-15		0.436	unit increase	Affymetrix [at least 2696785] (imputed)	N
1003	chr4	54799244	54799245	rs871606	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	4q12	LNX1-AS2, RPL21P44	rs871606-T		6E-13	(EA)	0.462	unit increase	Affymetrix [at least 2696785] (imputed)	N
1003	chr4	54799244	54799245	rs871606	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	4q12	LNX1-AS2, RPL21P44	rs871606-T		4E-34		0.489	unit increase	Affymetrix [at least 2696785] (imputed)	N
1003	chr4	54799244	54799245	rs871606	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	4q12	LNX1-AS2, RPL21P44	rs871606-T		1E-8		0.313	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1003	chr4	54799244	54799245	rs871606	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	4q12	LNX1-AS2, RPL21P44	rs871606-T		1E-12		0.262	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1003	chr4	54799244	54799245	rs871606	21909110	Wain LV	2011-09-11	Nat Genet	Genome-wide association study identifies six new loci influencing pulse pressure and mean arterial pressure.	Blood pressure	74,064 European ancestry individuals	48,607 European ancestry individuals	4q12	CHIC2	rs871606-T	0.85	1E-8	(Pulse Pressure)	0.429	[0.28-0.58] mmHg increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1003	chr4	54800758	54800759	rs7671947	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	4q12	PDGFRA	rs7671947-C	0.8736	2E-9		0.3182	[0.21-0.42] mmHg increase	Affymetrix [NR] (imputed)	N
1003	chr4	54800758	54800759	rs7671947	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	4q12	PDGFRA	rs7671947-C	0.8744	3E-29		0.4471	[0.37-0.53] mmHg increase	Affymetrix [NR] (imputed)	N
1003	chr4	54801227	54801228	rs60991988	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	4q12		rs60991988-G	NR	3E-12		0.0207	[0.015-0.027] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1003	chr4	54801548	54801549	rs17083718	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	4q12		rs17083718-G	NR	2E-8		0.0164	[0.011-0.022] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1003	chr4	54801548	54801549	rs17083718	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	4q12		rs17083718-?	NR	1E-13				NR [~ 8900000] (imputed)	N
1003	chr4	54801548	54801549	rs17083718	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption interaction (2df test)	63,608 European ancestry drinkers, 10,193 African American or Afro-Caribbean heavy drinkers,  2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,494 European ancestry non-drinkers, 11,224 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,002 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,452 Hispanic drinkers, 43,316 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,945 Asian ancestry non-drinkers, 6,925 Hispanic non-drinkers	4q12	LOC105377655, RPL21P44	rs17083718-A	0.9	4E-10	(AA, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1003	chr4	54801548	54801549	rs17083718	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Pulse pressure x alcohol consumption interaction (2df test)	91,099 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	238,053 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,447 Hispanic ancestry drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic ancestry non-drinkers	4q12	LOC105377655, RPL21P44	rs17083718-A	0.84	2E-8	(AA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1003	chr4	54802304	54802305	rs11725861	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	4q12	LNX1-AS2, RPL21P44	rs11725861-A		2E-8	(EA)	0.459	unit increase	Affymetrix [at least 2696785] (imputed)	N
1003	chr4	54802304	54802305	rs11725861	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	4q12	LNX1-AS2, RPL21P44	rs11725861-A		2E-10		0.437	unit increase	Affymetrix [at least 2696785] (imputed)	N
1003	chr4	54802304	54802305	rs11725861	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	4q12	LNX1-AS2, RPL21P44	rs11725861-A		8E-23		0.51	unit increase	Affymetrix [at least 2696785] (imputed)	N
1003	chr4	54829995	54829996	rs13152774	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	4q12		rs13152774-C	0.38	7E-17		8.35	z score increase	Affymetrix [9061022] (imputed)	N
1003	chr4	54829995	54829996	rs13152774	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	4q12		rs13152774-C	0.38	4E-8		5.49	z score increase	Affymetrix [9061022] (imputed)	N
1003	chr4	54829995	54829996	rs13152774	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	4q12	NR	rs13152774-C	0.396	2E-8				NR [9056863] (imputed)	N
1003	chr4	54829995	54829996	rs13152774	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	4q12	NR	rs13152774-C	0.396	3E-10				NR [9056863] (imputed)	N
1003	chr4	54835241	54835242	rs75742104	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	4q12		rs75742104-A	0.38	3E-11		6.64	z score increase	Affymetrix [9061022] (imputed)	N
1003	chr4	54835251	54835252	rs13124508	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	4q12	SIX3	rs13124508-?		1E-10				NR [7428630] (imputed)	N
1003	chr4	54889382	54889383	rs193113980	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q12	CHIC2	rs193113980-T	0.998	2E-6	(AA)	0.297	unit increase	Illumina [NR] (imputed)	N
1004	chr4	54939941	54939942	rs182823009	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q12	PDGFRA	rs182823009-C	0.999	3E-6	(AA)	0.332	unit increase	Illumina [NR] (imputed)	N
1004	chr4	54944742	54944743	rs192046469	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q12	PDGFRA	rs192046469-T	0.999	1E-6	(AA)	0.336	unit increase	Illumina [NR] (imputed)	N
1004	chr4	54966918	54966919	rs1132998	33169155	Bigdeli TB	2020-11-10	Schizophr Bull	Genome-Wide Association Studies of Schizophrenia and Bipolar Disorder in a Diverse Cohort of US Veterans.	Schizophrenia	44,794 European ancestry cases, 7,509 African American cases, 1,234 Latino cases, 112,777 European ancestry controls, 8,337 African American controls, 3,090 Latino controls	NA	4q12	GSX2	rs1132998-C	NR	2E-8		1.05	[1.03-1.07]	Affymetrix [up to 49134253] (imputed)	N
1004	chr4	54978606	54978607	rs114022259	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	4q12		rs114022259-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1004	chr4	55005855	55005856	rs2162137	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (multi-trait analysis)	90,939 European ancestry individuals	NA	4q12	GSX2, PDGFRA	rs2162137-C	0.34	1E-15		0.0073	NR unit increase	Affymetrix, Illumina [8002429] (imputed)	N
1004	chr4	55005855	55005856	rs2162137	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (adjusted for vertical disc diameter)	67,040 British ancestry individuals	NA	4q12	GSX2	rs2162137-C	0.34	2E-13		0.0071	[0.0052-0.009] unit increase	Affymetrix [at least 8002429] (imputed)	N
1004	chr4	55011768	55011769	rs1364989	24925725	Chung SA	2014-06-12	J Am Soc Nephrol	Lupus nephritis susceptibility loci in women with systemic lupus erythematosus.	Lupus nephritis in systemic lupus erythematosus	588 European ancestry cases, 1,412 European ancestry controls	NA	4q12	PDGFRA, GSX2	rs1364989-T	NR	5E-7	(Recessive)	3.41	[2.10-5.54]	Affymetrix, Illumina [1621689] (imputed)	N
1004	chr4	55018616	55018617	rs2033054	31809533	Han X	2019-09-06	Hum Mol Genet	Genome-wide association analysis of 95 549 individuals identifies novel loci and genes influencing optic disc morphology.	Optic disc size	67,040 British ancestry individuals	28,509 European ancestry individuals	4q12	GSX2	rs2033054-T	0.65	1E-10		0.01	unit decrease	Affymetrix [8928767] (imputed)	N
1004	chr4	55048805	55048806	rs188778252	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	4q12		rs188778252-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1004	chr4	55048805	55048806	rs188778252	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	4q12		rs188778252-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1005	chr4	55059150	55059151	rs12503971	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	4q12		rs12503971-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1005	chr4	55063372	55063373	rs890205	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q12	NR	rs890205-A	0.229995	4E-10				Affymetrix, Illumina [23472807] (imputed)	N
1005	chr4	55065329	55065330	rs775444277	30194396	Rafnar T	2018-09-07	Nat Commun	Variants associating with uterine leiomyoma highlight genetic background shared by various cancers and hormone-related traits.	Uterine fibroids	16,595 European ancestry cases, 523,330 European ancestry controls	NA	4q12	PDGFRA	rs775444277-G	0.00248	9E-10		2.63	[1.94-3.57]	Affymetrix, Illumina [43421991] (imputed)	N
1005	chr4	55066076	55066077	rs6554158	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	4q12	NR	rs6554158-A	0.231214	2E-10		0.014203	[0.0098-0.0186] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1005	chr4	55066757	55066758	rs7437961	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	4q12	FIP1L1	rs7437961-C	0.236068	8E-9		0.015029602	[0.0099-0.0201] unit increase	Affymetrix [93095623] (imputed)	N
1005	chr4	55071952	55071953	rs4864847	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	4q12	GSX2, PDGFRA	rs4864847-?	NR	8E-10		0.499	[0.34-0.66] unit decrease	Affymetrix [11100000] (imputed)	N
1005	chr4	55087241	55087241	rs200457494	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	4q12	NR	rs200457494-CA	0.212472	2E-12		0.0246417	[0.018-0.032] unit increase	Affymetrix [16580851] (imputed)	N
1005	chr4	55087580	55087581	rs17084051	23401653	Guggenheim JA	2013-01-03	Mol Vis	A genome-wide association study for corneal curvature identifies the platelet-derived growth factor receptor ? gene as a quantitative trait locus for eye size in white Europeans.	Corneal curvature	2,023 European ancestry children	2,008 Chinese ancestry adult individuals, 2,281 Malay ancestry adult individuals, 2,142 Indian ancestry adult individuals, 929 Chinese ancestry children	4q12	PDGFRA	rs17084051-A	NR	5E-14		0.126	[0.093-0.159] unit decrease	Illumina [2543887] (imputed)	N
1005	chr4	55087580	55087581	rs17084051	22144915	Fan Q	2011-12-01	PLoS Genet	Genome-wide meta-analysis of five Asian cohorts identifies PDGFRA as a susceptibility locus for corneal astigmatism.	Corneal astigmatism	1,231 Chinese ancestry cases, 785 Chinese ancestry controls, 1,018 Malay ancestry cases, 1,220 Malay ancestry controls	825 Indian ancestry cases, 1,314 Indian ancestry controls, 760 Chinese ancestry child cases, 169 Chinese ancestry child controls, 397 Chinese ancestry trios	4q12	intergenic	rs17084051-A	0.23	2E-6		1.21	[1.13-1.29]	Illumina [460528]	N
1005	chr4	55088760	55088761	rs7673984	29422769	Shah RL	2018-02-05	Mol Vis	A genome-wide association study of corneal astigmatism: The CREAM Consortium.	Corneal astigmatism	9,293 European ancestry cases, 12,957 European ancestry controls, 4,349 Asian ancestry cases, 4,771 Asian ancestry controls	NA	4q12	PDGFRA	rs7673984-T	0.22	6E-9		1.12	[1.08-1.16]	NR [~ 55000000] (imputed)	N
1005	chr4	55089813	55089814	rs4864857	30306274	Shah RL	2018-10-10	Hum Genet	Genome-wide association studies for corneal and refractive astigmatism in UK Biobank demonstrate a shared role for myopia susceptibility loci.	Corneal astigmatism	Up to 86,335 European ancestry individuals		4q12	PGDFRA	rs4864857-T	0.784	1E-6		0.017	[0.011-0.023] dioptres decrease	NR [5901671] (imputed)	N
1005	chr4	55089952	55089953	rs4864858	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (multi-trait analysis)	90,939 European ancestry individuals	NA	4q12	GSX2, PDGFRA	rs4864858-T	0.78	1E-14		0.0081	NR unit increase	Affymetrix, Illumina [8002429] (imputed)	N
1005	chr4	55092625	55092626	rs2114039	21665993	Han S	2011-06-10	Hum Mol Genet	Association of variants in FRAP1 and PDGFRA with corneal curvature in Asian populations from Singapore.	Corneal curvature	2,008 Chinese ancestry inidividuals, 2,281 Malay ancestry individuals	2,142 Asian Indian ancestry individuals, 929 Chinese ancestry children	4q12	PDGFRA	rs2114039-C	0.30	1E-9		0.129	[0.07-0.19] unit decrease	Illumina [462291]	N
1005	chr4	55094466	55094467	rs1800813	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	8,620 individuals (<25 years old)	NA	4q12		rs1800813-A	NR	1E-7		0.0258	[0.016-0.035] mm decrease	Affymetrix, Illumina [8936601] (imputed)	N
1005	chr4	55094466	55094467	rs1800813	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	35,422 individuals (>=25 years old)	NA	4q12		rs1800813-A	NR	1E-17		0.0218	[0.017-0.027] mm decrease	Affymetrix, Illumina [8936601] (imputed)	N
1005	chr4	55094466	55094467	rs1800813	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	29,580 European ancestry individuals, 14,462 Asian ancestry individuals	88,218 European ancestry individuals	4q12		rs1800813-A	0.22	2E-73		0.02	mm decrease	Affymetrix, Illumina [8936601] (imputed)	N
1005	chr4	55094466	55094467	rs1800813	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	29,580 European ancestry individuals	NA	4q12		rs1800813-A	0.21	1E-14		0.022	mm decrease	Affymetrix, Illumina [8936601] (imputed)	N
1005	chr4	55094466	55094467	rs1800813	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	14,462 Asian ancestry individuals	NA	4q12		rs1800813-A	0.23	2E-10		0.024	mm decrease	Affymetrix, Illumina [7861976] (imputed)	N
1005	chr4	55094466	55094467	rs1800813	24963161	Chen P	2014-06-24	Hum Mol Genet	CMPK1 and RBP3 are associated with corneal curvature in Asian populations.	Corneal curvature	3,178 Chinese ancestry individuals, 2,138 Malay ancestry individuals, 2,124 Asian Indian ancestry individuals	2,473 Chinese ancestry individuals, 2,747 Japanese ancestry individuals	4q12	PDGFRA	rs1800813-G	0.77	8E-9		0.1	[0.061-0.139] unit increase	Illumina [~ 7000000] (imputed)	N
1005	chr4	55095682	55095682	rs565335773	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (adjusted for vertical disc diameter)	67,040 British ancestry individuals	NA	4q12	PDGFRA	rs565335773-G	0.79	4E-12		0.00781	[0.0056-0.01] unit increase	Affymetrix [at least 8002429] (imputed)	N
1005	chr4	55096269	55096270	rs7668190	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	4q12	NR	rs7668190-?	NR	2E-9				Illumina [at least 7383741] (imputed)	N
1005	chr4	55124459	55124460	rs7677751	22144915	Fan Q	2011-12-01	PLoS Genet	Genome-wide meta-analysis of five Asian cohorts identifies PDGFRA as a susceptibility locus for corneal astigmatism.	Corneal astigmatism	1,231 Chinese ancestry cases, 785 Chinese ancestry controls, 1,018 Malay ancestry cases, 1,220 Malay ancestry controls	825 Indian ancestry cases, 1,314 Indian ancestry controls, 760 Chinese ancestry child cases, 169 Chinese ancestry child controls, 397 Chinese ancestry trios	4q12	PDGFRA	rs7677751-T	0.22	8E-9		1.26	[1.18-1.34]	Illumina [460528]	N
1005	chr4	55138005	55138005	rs367615089	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		AC058822.1	rs367615089-?	NR	6E-9		0.47	[NR] unit increase	Affymetrix [NR] (imputed)	N
1005	chr4	55142690	55142691	rs67388297	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q12	PDGFRA	rs67388297-C	0.92046875	1E-7	(PDGFRA, 10366_11_3)	0.24024533	[0.15-0.33] unit increase	Illumina [> 1000000] (imputed)	N
1006	chr4	55190081	55190082	rs115616389	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	4q12		rs115616389-?	NR	9E-11				NR [~ 8900000] (imputed)	N
1006	chr4	55190081	55190082	rs115616389	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	4q12		rs115616389-?	NR	4E-13				NR [~ 8900000] (imputed)	N
1006	chr4	55199932	55199933	rs1873774	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	4q12	Intergenic	rs1873774-T	0.5967	2E-8	(MTAG)	0.0131	[0.0086-0.0176] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1006	chr4	55202123	55202124	rs11736538	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	4q12	NR	rs11736538-T	0.404	2E-8				NR [9056863] (imputed)	N
1006	chr4	55221577	55221578	rs62299452	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	4q12		rs62299452-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1006	chr4	55234824	55234825	rs17690232	18193045	Sanna S	2008-01-13	Nat Genet	Common variants in the GDF5-UQCC region are associated with variation in human height.	Height	1,084 European ancestry cases, 1,287 European ancestry controls, 4,298 European individuals	23,684 European ancestry individuals, 3,860 African American individuals	4q12	PDGFRA	rs17690232-C	0.80	4E-7		0.86	[NR] cm increase	Affymetrix, Illumina [~ 2261000] (imputed)	N
1006	chr4	55241580	55241581	rs9312648	22952603	Hart AB	2012-08-28	PLoS One	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 10 individuals	NA	4q12	intergenic	rs9312648-?	NR	6E-6	(SF6)			Affymetrix [5476100] (imputed)	N
1006	chr4	55277917	55277918	rs112497592	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Smoking x traumatic event in childhood (sexually molested) interaction	127,766 European ancestry individuals	NA	4q12		rs112497592-?	NR	1E-8		1.1471	[0.75-1.54] unit increase	Affymetrix [NR] (imputed)	N
1007	chr4	55332806	55332817	rs142125007	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-2 levels	3,475 Finnish ancestry individuals	NA	4q12	NR	rs142125007-TTCCTTTTATCC		3E-6		0.182	[0.11-0.26] SD units decrease	NR [10700000] (imputed)	N
1007	chr4	55335500	55335501	rs12644772	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	4q12		rs12644772-C	0.354235	2E-9		0.014352071	[0.0097-0.019] unit increase	Affymetrix [93095623] (imputed)	N
1007	chr4	55347865	55347866	rs2412587	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	4q12		rs2412587-G	0.401107	4E-24		0.024700072	[0.02-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
1007	chr4	55348262	55348263	rs61219582	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	4q12		rs61219582-A	0.408673	7E-24		0.0471832	[0.043-0.051] unit decrease	Affymetrix [93095623] (imputed)	N
1007	chr4	55348262	55348263	rs61219582	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	4q12		rs61219582-A	0.408649	9E-19		0.020877684	[0.016-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1007	chr4	55348686	55348687	rs11736561	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	4q12		rs11736561-G	0.408509	7E-26		0.02478872	[0.02-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1007	chr4	55351695	55351696	rs11734754	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	4q12		rs11734754-G	0.403197	2E-15		0.019061958	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1007	chr4	55380470	55380471	rs11133333	33002292	Shinohara T	2020-10-01	J Cell Mol Med	Inherited genetic variants associated with glucocorticoid sensitivity in leukaemia cells.	dexamethasone sensitivity in B-cell precursor acute lymphoblastic leukaemia	72 Japanese ancestry leukaemic cell lines	NA	4q12	intergenic	rs11133333-T	0.325	5E-6				Illumina [331281]	N
1007	chr4	55386877	55386878	rs1848347	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q12	NR	rs1848347-A	0.138343	1E-357				Affymetrix, Illumina [24332387] (imputed)	N
1007	chr4	55386877	55386878	rs1848347	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Hemoglobin	108,769 Japanese ancestry individuals	NA	4q12	PDGFRA, KIT	rs1848347-?	NR	6E-16		0.03832	[0.029-0.048] unit decrease novel	Illumina [6108953] (imputed)	N
1007	chr4	55394171	55394172	rs218237	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	142,940 East Asian ancestry individuals	NA	4q12	NR	rs218237-C	0.721827	2E-28		0.046213	[0.038-0.054] SD units increase	Affymetrix, Illumina [16289021] (imputed)	N
1007	chr4	55394171	55394172	rs218237	31194788	Read RW	2019-06-13	PLoS One	GWAS and PheWAS of red blood cell components in a Northern Nevadan cohort.	Mean corpuscular volume	Up to 53 African American individuals, 100 Asian ancestry individuals, 4,175 European ancestry individuals, 138 Hispanic or Latin American individuals, 30 Native American individuals, 11 Pacific Islander ancestry individuals, 168 unknown ancestry individuals	NA	4q12	Intergenic	rs218237-T	0.1519	5E-9		0.74	[0.49-0.99] fL increase	Illumina [498916]	N
1007	chr4	55394171	55394172	rs218237	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	4q12		rs218237-?	NR	1E-300				NR [~ 8900000] (imputed)	N
1007	chr4	55394171	55394172	rs218237	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	4q12		rs218237-?	NR	1E-300				NR [~ 8900000] (imputed)	N
1007	chr4	55394171	55394172	rs218237	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Hematocrit	108,757 Japanese ancestry individuals	NA	4q12	PDGFRA, KIT	rs218237-?	NR	2E-20		0.04383	[0.035-0.053] unit decrease novel	Illumina [6108953] (imputed)	N
1007	chr4	55394171	55394172	rs218237	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Red blood cell count	up to 40,258 European ancestry individuals, up to 16,128 African American individuals, up to 15,252 East Asian individuals.	16,389 individuals of European and African American ancestry.	4q12	KIT	rs218237-T	NR	4E-16	(Asian)	0.0106	[0.0081-0.0131] unit decrease	NR [2500000] (imputed)	N
1007	chr4	55394171	55394172	rs218237	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular volume	up to 29,946 European ancestry individuals, up to 6150 African American individuals, 15,074 East Asian individuals.	16,389 individuals of European and African American ancestry.	4q12	KIT	rs218237-?	NR	2E-36				NR [2500000] (imputed)	N
1007	chr4	55394171	55394172	rs218237	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular hemoglobin	up to 21,020 European ancestry individuals, up to 3,621 African American individuals, up to 15,062 East Asian individuals.	16,389 individuals of European and African American ancestry.	4q12	KIT	rs218237-?	NR	1E-8				NR [2500000] (imputed)	N
1007	chr4	55394171	55394172	rs218237	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Hemoglobin levels	up to 40,258 European ancestry individuals, 16,128 African American individuals, up to 15,252 East Asian ancestry individuals.	16,389 European and African American individuals	4q12	KIT	rs218237-?	NR	1E-8				Affymetrix, Illumina [2500000] (imputed)	N
1007	chr4	55394171	55394172	rs218237	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Hematocrit	up to 40,258 European ancestry individuals, up to 16,128 African American individuals, up to 15,252 East Asian ancestry individuals.	16,389 European and African American individuals	4q12	KIT	rs218237-?	NR	1E-8				NR [2500000] (imputed)	N
1007	chr4	55394171	55394172	rs218237	20139978	Kamatani Y	2010-02-07	Nat Genet	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Red blood cell count	14,392 Japanese ancestry individuals	NA	4q12	PDGFRA, HK1	rs218237-T	0.27	2E-17		0.111	[0.086-0.136] unit decrease	Illumina [561583]	N
1007	chr4	55394171	55394172	rs218237	20139978	Kamatani Y	2010-02-07	Nat Genet	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Mean corpuscular volume	14,364 Japanese ancestry individuals	NA	4q12	PDGFRA, HK1	rs218237-T	0.27	2E-29		0.147	[0.12-0.17] unit increase	Illumina [561583]	N
1007	chr4	55394171	55394172	rs218237	20139978	Kamatani Y	2010-02-07	Nat Genet	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Mean corpuscular hemoglobin	Up to 14,362 Japanese ancestry individuals	NA	4q12	PDGFRA, HK1	rs218237-T	0.27	3E-25		0.136	[0.11-0.16] unit increase	Illumina [561583]	N
1007	chr4	55395023	55395024	rs218238	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Red blood cell count	108,794 Japanese ancestry individuals	NA	4q12	PDGFRA, KIT	rs218238-?	NR	1E-93		0.09843	[0.089-0.108] unit decrease novel	Illumina [6108953] (imputed)	N
1007	chr4	55395023	55395024	rs218238	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular volume	108,256 Japanese ancestry individuals	NA	4q12	PDGFRA, KIT	rs218238-?	NR	3E-126		0.1147	[0.11-0.12] unit increase novel	Illumina [6108953] (imputed)	N
1007	chr4	55395023	55395024	rs218238	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Red blood cell count	up to 40,258 European ancestry individuals, up to 16,128 African American individuals, up to 15,252 East Asian individuals.	16,389 individuals of European and African American ancestry.	4q12	KIT	rs218238-?	NR	2E-28				NR [2500000] (imputed)	N
1007	chr4	55395023	55395024	rs218238	23222517	van der Harst P	2012-12-05	Nature	Seventy-five genetic loci influencing the human red blood cell.	Red blood cell traits	62,553 European ancestry individuals, 9,308 South Asian ancestry individuals	63,506 European ancestry individuals	4q12	KIT	rs218238-A	0.78	3E-39	(EA, RBCC)	0.033	[0.027-0.039] unit increase	Affymetrix, Illumina, Perlegen [2711806] (imputed)	N
1007	chr4	55395101	55395102	rs218239	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	4q12	NR	rs218239-A	0.220907	7E-533		0.108256	[0.1-0.11] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
1007	chr4	55395564	55395565	rs218240	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin	108,054 Japanese ancestry individuals	NA	4q12	PDGFRA, KIT	rs218240-?	NR	6E-109		0.1078	[0.098-0.117] unit increase novel	Illumina [6108953] (imputed)	N
1007	chr4	55395617	55395618	rs218241	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	150,708 East Asian ancestry individuals	NA	4q12	NR	rs218241-A	0.716205	4E-125		0.097025	[0.089-0.105] SD units increase	Affymetrix, Illumina [16709798] (imputed)	N
1007	chr4	55396321	55396322	rs218243	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	4q12		rs218243-A	0.814	8E-11				Affymetrix [10369434] (imputed)	N
1007	chr4	55396321	55396322	rs218243	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q12	NR	rs218243-G	0.217328	4E-660				Affymetrix, Illumina [24246363] (imputed)	N
1007	chr4	55396321	55396322	rs218243	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	4q12	intergenic	rs218243-G	0.1874	1E-10		0.02985492	[0.021-0.039] unit increase	Affymetrix [~ 2500000] (imputed)	N
1007	chr4	55396321	55396322	rs218243	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	4q12	intergenic	rs218243-G	0.1874	2E-9		0.02782587	[0.019-0.037] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1007	chr4	55397517	55397518	rs218246	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	121,047 East Asian ancestry individuals	NA	4q12	NR	rs218246-C	0.718495	2E-144		0.116669	[0.11-0.13] SD units decrease	Affymetrix, Illumina [16286195] (imputed)	N
1007	chr4	55397517	55397518	rs218246	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q12	NR	rs218246-G	0.244995	4E-513				Affymetrix, Illumina [20825802] (imputed)	N
1007	chr4	55397517	55397518	rs218246	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	119,629 East Asian ancestry individuals	NA	4q12	NR	rs218246-C	0.718486	4E-125		0.109128	[0.1-0.12] SD units decrease	Affymetrix, Illumina [16286228] (imputed)	N
1007	chr4	55397517	55397518	rs218246	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	149,861 East Asian ancestry individuals	NA	4q12	NR	rs218246-C	0.716177	2E-21		0.038927	[0.031-0.047] SD units increase	Affymetrix, Illumina [16709126] (imputed)	N
1007	chr4	55397735	55397736	rs218247	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	4q12	NR	rs218247-C	0.220818	7E-438		0.10328	[0.099-0.108] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1007	chr4	55397735	55397736	rs218247	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-7 levels	3,409 Finnish ancestry individuals	NA	4q12	NR	rs218247-G		2E-6		0.1352	[0.079-0.191] SD units increase	NR [10700000] (imputed)	N
1007	chr4	55398524	55398525	rs218251	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	4q12	NR	rs218251-C	0.126641	7E-380		0.125505	[0.12-0.13] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
1007	chr4	55399203	55399204	rs218252	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	4q12		rs218252-G	0.781	1E-11				Affymetrix [10369434] (imputed)	N
1007	chr4	55399284	55399285	rs58374964	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	4q12		rs58374964-A	NR	1E-14		0.0215	[0.016-0.027] unit increase	Affymetrix, Illumina [20536605] (imputed)	N
1007	chr4	55402408	55402409	rs218256	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	8,188 South Asian ancestry individuals	NA	4q12	NR	rs218256-C	0.662478	8E-14		0.122857	[0.091-0.155] SD units decrease	Affymetrix, Illumina [28492174] (imputed)	N
1007	chr4	55402408	55402409	rs218256	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	8,181 South Asian ancestry individuals	NA	4q12	NR	rs218256-C	0.662374	4E-12		0.114297	[0.082-0.147] SD units decrease	Affymetrix, Illumina [28486451] (imputed)	N
1007	chr4	55402408	55402409	rs218256	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	4q12	intergenic	rs218256-G	0.2204	2E-161		0.1153167	[0.11-0.12] unit increase	Affymetrix [~ 2500000] (imputed)	N
1007	chr4	55405947	55405948	rs218259	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	4q12		rs218259-G	0.279451	8E-152		0.106221	[0.098-0.114] unit increase	Illumina [13476299] (imputed)	N
1007	chr4	55407098	55407099	rs170121	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	4q12	intergenic	rs170121-C	0.2198	3E-127		0.1031647	[0.095-0.112] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1007	chr4	55407761	55407762	rs172629	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	4q12		rs172629-G	0.126281	2E-12		0.031064445	[0.022-0.04] unit decrease	Affymetrix [93095623] (imputed)	N
1007	chr4	55407761	55407762	rs172629	20139978	Kamatani Y	2010-02-07	Nat Genet	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Mean corpuscular volume	14,364 Japanese ancestry individuals	NA	4q12	KIT	rs172629-C	0.74	1E-27		0.698	[0.573-0.824] unit decrease	Illumina [561583]	N
1007	chr4	55407761	55407762	rs172629	19862010	Ganesh SK	2009-10-11	Nat Genet	Multiple loci influence erythrocyte phenotypes in the CHARGE Consortium.	Mean corpuscular volume	24,167 European ancestry individuals	9,456 European ancestry individuals	4q12	KIT	rs172629-G	NR	1E-15		0.0	[0.003-0.006] fl decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1007	chr4	55408874	55408875	rs218264	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	4q12		rs218264-T	NR	1E-26		0.0239	[0.02-0.028] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
1007	chr4	55408874	55408875	rs218264	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	154,355 East Asian ancestry individuals	NA	4q12		rs218264-T	0.282964	4E-8		0.0209455	[0.013-0.028] unit increase	Illumina [13479091] (imputed)	N
1007	chr4	55408874	55408875	rs218264	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	4q12		rs218264-T	NR	2E-35		0.0303	[0.026-0.035] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
1007	chr4	55408874	55408875	rs218264	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	4q12		rs218264-T	NR	2E-479		0.1065	[0.1-0.11] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
1007	chr4	55408874	55408875	rs218264	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	4q12		rs218264-T	NR	1E-68		0.0325	[0.029-0.036] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
1007	chr4	55408874	55408875	rs218264	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	4q12		rs218264-A	0.752	9E-287		0.46	[-0.49--0.44] % decrease	Affymetrix [NR] (imputed)	N
1007	chr4	55408874	55408875	rs218264	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	4q12	NR	rs218264-T	0.249319	4E-34		0.0313694	[0.026-0.036] unit increase	Affymetrix [93095623] (imputed)	N
1007	chr4	55408874	55408875	rs218264	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	4q12		rs218264-T	0.249332	3E-39		0.05178283	[0.044-0.06] unit decrease	Affymetrix [93095623] (imputed)	N
1007	chr4	55408874	55408875	rs218264	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	4q12		rs218264-T	0.249364	1E-46		0.037007816	[0.032-0.042] unit increase	Affymetrix [93095623] (imputed)	N
1007	chr4	55408874	55408875	rs218264	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	4q12		rs218264-T	0.249489	2E-40		0.05312832	[0.045-0.061] unit increase	Affymetrix [93095623] (imputed)	N
1007	chr4	55408874	55408875	rs218264	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	4q12		rs218264-T	0.249536	1E-39		0.052866988	[0.045-0.061] unit increase	Affymetrix [93095623] (imputed)	N
1007	chr4	55408874	55408875	rs218264	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	4q12		rs218264-T	0.249419	3E-51		0.113808	[0.11-0.12] unit increase	Affymetrix [93095623] (imputed)	N
1007	chr4	55408874	55408875	rs218264	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	4q12		rs218264-T	0.249464	3E-43		0.05438874	[0.047-0.062] unit increase	Affymetrix [93095623] (imputed)	N
1007	chr4	55408874	55408875	rs218264	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	4q12		rs218264-T	0.249376	1E-51		0.040085237	[0.035-0.045] unit decrease	Affymetrix [93095623] (imputed)	N
1007	chr4	55408874	55408875	rs218264	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	4q12		rs218264-T	0.249371	7E-20		0.031258907	[0.025-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
1007	chr4	55408874	55408875	rs218264	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q12	NR	rs218264-T	0.269486	1E-39				Affymetrix, Illumina [24649327] (imputed)	N
1007	chr4	55408874	55408875	rs218264	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	4q12	NR	rs218264-T	0.250868	3E-33		0.025769	[0.022-0.03] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
1007	chr4	55408874	55408875	rs218264	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	9,302 Hispanic or Latin American individuals	NA	4q12	NR	rs218264-A	0.609835	1E-13		0.114369	[0.084-0.144] SD units increase	Affymetrix, Illumina [26810348] (imputed)	N
1007	chr4	55408874	55408875	rs218264	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q12	NR	rs218264-T	0.26649	3E-49				Affymetrix, Illumina [23114412] (imputed)	N
1007	chr4	55408874	55408875	rs218264	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	4q12	NR	rs218264-T	0.250834	6E-46		0.031802	[0.027-0.036] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
1007	chr4	55408874	55408875	rs218264	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	9,298 Hispanic or Latin American individuals	NA	4q12	NR	rs218264-A	0.609856	5E-15		0.120191	[0.09-0.15] SD units decrease	Affymetrix, Illumina [26810224] (imputed)	N
1007	chr4	55408874	55408875	rs218264	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q12	NR	rs218264-T	0.26816	6E-13				Affymetrix, Illumina [21126107] (imputed)	N
1007	chr4	55408874	55408875	rs218264	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q12	NR	rs218264-T	0.269389	2E-98				Affymetrix, Illumina [24653286] (imputed)	N
1007	chr4	55408874	55408875	rs218264	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	4q12	NR	rs218264-T	0.250824	2E-83		0.041517	[0.037-0.046] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
1007	chr4	55408874	55408875	rs218264	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q12	NR	rs218264-T	0.268737	1E-128				Affymetrix, Illumina [24558453] (imputed)	N
1007	chr4	55408874	55408875	rs218264	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	4q12	NR	rs218264-T	0.250898	1E-104		0.046561	[0.042-0.051] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
1007	chr4	55408874	55408875	rs218264	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	4q12	intergenic	rs218264-T		9E-50		0.037	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
1007	chr4	55408874	55408875	rs218264	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	4q12		rs218264-?	NR	7E-26				NR [~ 8900000] (imputed)	N
1007	chr4	55408874	55408875	rs218264	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	4q12	intergenic	rs218264-T	0.2525	2E-16		0.03395222	[0.026-0.042] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1007	chr4	55408874	55408875	rs218264	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	4q12	intergenic	rs218264-T	0.2526	2E-25		0.04290296	[0.035-0.051] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1007	chr4	55408998	55408999	rs218265	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	4q12		rs218265-C	NR	5E-426		0.0975	[0.093-0.102] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
1007	chr4	55408998	55408999	rs218265	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	153,512 East Asian ancestry individuals	NA	4q12		rs218265-C	0.280589	1E-134		0.0867997	[0.08-0.094] unit decrease	Illumina [13479135] (imputed)	N
1007	chr4	55408998	55408999	rs218265	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	4q12		rs218265-C	NR	1E-14		0.0189	[0.014-0.024] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1007	chr4	55408998	55408999	rs218265	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	4q12		rs218265-C	0.280558	1E-9		0.0227366	[0.015-0.03] unit increase	Illumina [13478928] (imputed)	N
1007	chr4	55408998	55408999	rs218265	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	4q12		rs218265-C	0.280657	1E-167		0.111572	[0.1-0.12] unit increase	Illumina [13476266] (imputed)	N
1007	chr4	55408998	55408999	rs218265	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	4q12		rs218265-C	NR	6E-442		0.1153	[0.11-0.12] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
1007	chr4	55408998	55408999	rs218265	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	152,447 East Asian ancestry individuals	NA	4q12		rs218265-C	0.280625	3E-20		0.0318027	[0.025-0.039] unit decrease	Illumina [13478948] (imputed)	N
1007	chr4	55408998	55408999	rs218265	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	4q12		rs218265-C	NR	7E-86		0.0422	[0.038-0.046] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
1007	chr4	55408998	55408999	rs218265	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	153,015 East Asian ancestry individuals	NA	4q12		rs218265-C	0.280707	1E-29		0.0397553	[0.033-0.047] unit decrease	Illumina [13478961] (imputed)	N
1007	chr4	55408998	55408999	rs218265	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Red blood cell count	20,220 Amish, White ancestry individuals, 384 Asian ancestry individuals, 10,747 Black individuals, 13,119 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	4q12		rs218265-C	NR	6E-30		0.04	[0.04-0.04] unit decrease	Illumina [92652022]	N
1007	chr4	55408998	55408999	rs218265	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular volume	22,267 Amish, White ancestry individuals, 447 Asian ancestry individuals, 12,285 Black individuals, 13,831 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	4q12		rs218265-C	NR	3E-31		0.53	[0.43-0.63] unit increase	Illumina [97506867]	N
1007	chr4	55408998	55408999	rs218265	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular hemoglobin	20,714 Amish, White ancestry individuals, 447 Asian ancestry individuals, 11,246 Black individuals, 13,834 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	4q12		rs218265-C	NR	2E-28		0.2	[0.16-0.24] unit increase	Illumina [94681438]	N
1007	chr4	55408998	55408999	rs218265	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Hematocrit	33,324 Amish, White ancestry individuals, 654 Asian ancestry individuals, 14,474 Black individuals, 14,035 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	4q12		rs218265-C	NR	1E-9		0.16	[0.1-0.22] unit decrease	Illumina [110396782]	N
1007	chr4	55408998	55408999	rs218265	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	4q12	NR	rs218265-C	0.155223	8E-34		0.037877128	[0.032-0.044] unit increase	Affymetrix [93095623] (imputed)	N
1007	chr4	55408998	55408999	rs218265	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	4q12		rs218265-C	0.155113	7E-56		0.07237096	[0.063-0.081] unit decrease	Affymetrix [93095623] (imputed)	N
1007	chr4	55408998	55408999	rs218265	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	4q12		rs218265-C	0.155043	8E-16		0.02541001	[0.019-0.032] unit increase	Affymetrix [93095623] (imputed)	N
1007	chr4	55408998	55408999	rs218265	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	4q12		rs218265-C	0.155059	2E-10		0.019948483	[0.014-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1007	chr4	55408998	55408999	rs218265	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	4q12		rs218265-C	0.155128	3E-31		0.036132492	[0.03-0.042] unit increase	Affymetrix [93095623] (imputed)	N
1007	chr4	55408998	55408999	rs218265	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	4q12		rs218265-C	0.15529	1E-35		0.05784295	[0.049-0.067] unit increase	Affymetrix [93095623] (imputed)	N
1007	chr4	55408998	55408999	rs218265	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	4q12		rs218265-C	0.155273	3E-36		0.058835234	[0.05-0.068] unit increase	Affymetrix [93095623] (imputed)	N
1007	chr4	55408998	55408999	rs218265	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	4q12		rs218265-C	0.155204	2E-62		0.135385	[0.13-0.14] unit increase	Affymetrix [93095623] (imputed)	N
1007	chr4	55408998	55408999	rs218265	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	4q12		rs218265-C	0.155248	3E-56		0.072420955	[0.063-0.081] unit increase	Affymetrix [93095623] (imputed)	N
1007	chr4	55408998	55408999	rs218265	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	4q12		rs218265-C	0.15512	1E-32		0.03692685	[0.031-0.043] unit decrease	Affymetrix [93095623] (imputed)	N
1007	chr4	55408998	55408999	rs218265	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	4q12		rs218265-C	0.15523	1E-72		0.056421757	[0.05-0.063] unit increase	Affymetrix [93095623] (imputed)	N
1007	chr4	55408998	55408999	rs218265	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	4q12		rs218265-C	0.15517	1E-62		0.051987294	[0.046-0.058] unit increase	Affymetrix [93095623] (imputed)	N
1007	chr4	55408998	55408999	rs218265	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	4q12		rs218265-C	0.155174	2E-24		0.03180276	[0.026-0.038] unit increase	Affymetrix [93095623] (imputed)	N
1007	chr4	55408998	55408999	rs218265	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	14,222 African American or Afro-Caribbean and African ancestry individuals	NA	4q12	NR	rs218265-T	0.760432	4E-10		0.089679	[0.062-0.118] SD units increase	Affymetrix, Illumina [36679691] (imputed)	N
1007	chr4	55408998	55408999	rs218265	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q12	NR	rs218265-C	0.185972	7E-15				Affymetrix, Illumina [24588908] (imputed)	N
1007	chr4	55408998	55408999	rs218265	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	4q12	NR	rs218265-C	0.155486	9E-12		0.019041	[0.014-0.025] SD unit increase	Affymetrix, Illumina [50282193] (imputed)	N
1007	chr4	55408998	55408999	rs218265	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red blood cell count	8,679 African American individuals, 17,412 Hispanic or Latin American individuals, 14,690 European ancestry individuals, 127 Asian ancestry individuals, 20 Native American ancestry individuals, 382 individuals	NA	4q12		rs218265-?	0.2307	5E-27		0.0382	[0.031-0.045] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
1007	chr4	55408998	55408999	rs218265	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red blood cell count	17,412 Hispanic or Latin American individuals	NA	4q12		rs218265-?	0.3189	4E-13		0.035	[0.026-0.044] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
1007	chr4	55408998	55408999	rs218265	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red blood cell count	14,690 European ancestry individuals	NA	4q12		rs218265-?	0.158	2E-13		0.0446	[0.033-0.056] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
1007	chr4	55408998	55408999	rs218265	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular volume	8,556 African American individuals, 17,141 Hispanic or Latin American individuals, 14,483 European ancestry individuals, 125 Asian ancestry individuals, 594 Native American ancestry individuals, 377 individuals	NA	4q12		rs218265-?	0.2307	7E-27		0.5089	[0.42-0.6] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
1007	chr4	55408998	55408999	rs218265	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular volume	17,141 Hispanic or Latin American individuals	NA	4q12		rs218265-?	0.3189	1E-15		0.5696	[0.43-0.71] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
1007	chr4	55408998	55408999	rs218265	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular volume	14,483 European ancestry individuals	NA	4q12		rs218265-?	0.158	3E-10		0.4577	[0.32-0.6] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
1007	chr4	55408998	55408999	rs218265	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin	8,694 African American individuals, 17,400 Hispanic or Latin American individuals, 14,693 European ancestry individuals, 127 Asian ancestry individuals, 20 Native American ancestry individuals, 382 individuals	NA	4q12		rs218265-?	0.2307	1E-26		0.1932	[0.16-0.23] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
1007	chr4	55408998	55408999	rs218265	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin	17,400 Hispanic or Latin American individuals	NA	4q12		rs218265-?	0.3189	1E-16		0.2169	[0.17-0.27] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
1007	chr4	55408998	55408999	rs218265	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin	14,693 European ancestry individuals	NA	4q12		rs218265-?	0.158	4E-9		0.1677	[0.11-0.22] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
1007	chr4	55408998	55408999	rs218265	28453575	Hodonsky CJ	2017-04-28	PLoS Genet	Genome-wide association study of red blood cell traits in Hispanics/Latinos: The Hispanic Community Health Study/Study of Latinos.	Red blood cell count	12,502 Hispanic/Latino individuals	4,772 Hispanic/Latino individuals	4q12	KIT, PDGFRA, FIP1L1	rs218265-T	0.67	4E-10		0.033	[0.013-0.053] cells x E9 increase	Illumina [27801688] (imputed)	N
1007	chr4	55408998	55408999	rs218265	28453575	Hodonsky CJ	2017-04-28	PLoS Genet	Genome-wide association study of red blood cell traits in Hispanics/Latinos: The Hispanic Community Health Study/Study of Latinos.	Mean corpuscular volume	12,502 Hispanic/Latino individuals	4,772 Hispanic/Latino individuals	4q12	KIT	rs218265-T	0.67	9E-13		0.58	[0.42-0.74] fL decrease	Illumina [27801688] (imputed)	N
1007	chr4	55408998	55408999	rs218265	28453575	Hodonsky CJ	2017-04-28	PLoS Genet	Genome-wide association study of red blood cell traits in Hispanics/Latinos: The Hispanic Community Health Study/Study of Latinos.	Mean corpuscular hemoglobin	12,502 Hispanic/Latino individuals	4,772 Hispanic/Latino individuals	4q12	KIT	rs218265-T	0.67	3E-12		0.21	[0.15-0.27] pg decrease	Illumina [27801688] (imputed)	N
1007	chr4	55408998	55408999	rs218265	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	4q12	intergenic	rs218265-C	0.1571	2E-13		0.03676361	[0.027-0.047] unit increase	Affymetrix [~ 2500000] (imputed)	N
1007	chr4	55408998	55408999	rs218265	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	4q12	intergenic	rs218265-C	0.1571	1E-16		0.04133874	[0.032-0.051] unit increase	Affymetrix [~ 2500000] (imputed)	N
1007	chr4	55408998	55408999	rs218265	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	4q12	intergenic	rs218265-C	0.1571	1E-16		0.04149562	[0.032-0.051] unit increase	Affymetrix [~ 2500000] (imputed)	N
1007	chr4	55408998	55408999	rs218265	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	4q12	intergenic	rs218265-C	0.1572	4E-19		0.04472222	[0.035-0.055] unit increase	Affymetrix [~ 2500000] (imputed)	N
1007	chr4	55408998	55408999	rs218265	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	4q12	intergenic	rs218265-C	0.1571	3E-148		0.1283842	[0.12-0.14] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1007	chr4	55408998	55408999	rs218265	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	4q12	intergenic	rs218265-C	0.1571	3E-10		0.03203843	[0.022-0.042] unit increase	Affymetrix [~ 2500000] (imputed)	N
1007	chr4	55408998	55408999	rs218265	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	4q12	intergenic	rs218265-C	0.1571	8E-17		0.04155328	[0.032-0.051] unit increase	Affymetrix [~ 2500000] (imputed)	N
1007	chr4	55408998	55408999	rs218265	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	4q12	intergenic	rs218265-C	0.1571	3E-16		0.0408957	[0.031-0.051] unit increase	Affymetrix [~ 2500000] (imputed)	N
1007	chr4	55408998	55408999	rs218265	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	4q12	intergenic	rs218265-C	0.1572	9E-190		0.1443621	[0.13-0.15] unit increase	Affymetrix [~ 2500000] (imputed)	N
1007	chr4	55408998	55408999	rs218265	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	4q12	intergenic	rs218265-C	0.1572	2E-169		0.1367009	[0.13-0.15] unit increase	Affymetrix [~ 2500000] (imputed)	N
1007	chr4	55408998	55408999	rs218265	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	4q12	intergenic	rs218265-C	0.1572	7E-36		0.06185761	[0.052-0.072] unit increase	Affymetrix [~ 2500000] (imputed)	N
1007	chr4	55408998	55408999	rs218265	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	4q12	intergenic	rs218265-C	0.1572	5E-34		0.06072014	[0.051-0.071] unit increase	Affymetrix [~ 2500000] (imputed)	N
1007	chr4	55408998	55408999	rs218265	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	4q12	intergenic	rs218265-C	0.1572	2E-16		0.04109447	[0.031-0.051] unit increase	Affymetrix [~ 2500000] (imputed)	N
1007	chr4	55411590	55411591	rs218271	25475840	Colodro-Conde L	2014-12-05	Twin Res Hum Genet	A twin study of breastfeeding with a preliminary genome-wide association scan.	Breastfeeding duration	1,521 mothers from 1,073 families	NA	4q12	KIT	rs218271-?	NR	9E-6		0.238	[0.13-0.34] unit decrease	Illumina [6590000] (imputed)	N
1007	chr4	55436679	55436680	rs2703486	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	4q12		rs2703486-?	NR	3E-12				NR [~ 8900000] (imputed)	N
1007	chr4	55437491	55437492	rs2703485	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	4q12		rs2703485-C	0.357009	4E-11		0.015598222	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1007	chr4	55437491	55437492	rs2703485	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	4q12		rs2703485-C	0.356875	7E-17		0.019780094	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1007	chr4	55437491	55437492	rs2703485	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	4q12		rs2703485-C	0.356917	9E-11		0.0135333	[0.0093-0.0178] unit decrease	Affymetrix [93095623] (imputed)	N
1007	chr4	55437491	55437492	rs2703485	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	4q12	intergenic	rs2703485-C	0.357	5E-9		0.02155405	[0.014-0.029] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1008	chr4	55445651	55445652	rs6833573	33075057	Li X	2020-10-19	PLoS Genet	Automated feature extraction from population wearable device data identified novel loci associated with sleep and circadian rhythms.	Sleep end time	90,515 individuals	NA	4q12	LINC02260	rs6833573-C	NR	2E-9		0.515	[0.35-0.68] unit decrease	NR [11024754] (imputed)	N
1008	chr4	55475316	55475317	rs2703479	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	4q12		rs2703479-?	NR	7E-25				NR [~ 8900000] (imputed)	N
1008	chr4	55476826	55476827	rs35577154	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Pancreatic cancer	768 White British ancestry cases, 264,559 White British ancestry controls	NA	4q12		rs35577154-?	NR	4E-6		1.82356	[1.57-2.08]	NR [663102]	N
1008	chr4	55482817	55482818	rs2537859	19416921	Scott LJ	2009-05-05	Proc Natl Acad Sci U S A	Genome-wide association and meta-analysis of bipolar disorder in individuals of European ancestry.	Bipolar disorder	3,683 European ancestry cases, 14,507 European ancestry controls	NA	4q12	KIT	rs2537859-T	0.60	4E-6		1.16	[1.09-1.24]	Affymetrix, Illumina [2366197] (imputed)	N
1008	chr4	55485187	55485188	rs12504244	30087453	Yilmaz Z	2018-08-07	Mol Psychiatry	Examination of the shared genetic basis of anorexia nervosa and obsessive-compulsive disorder.	Anorexia nervosa or obsessive-compulsive disorder	3,495 European ancestry anorexia nervosa cases, 2,688 European ancestry obsessive-compulsive disorder cases, 18,013 European ancestry controls	NA	4q12	KIT	rs12504244-?	NR	4E-7				NR [7461827] (imputed)	N
1008	chr4	55490940	55490941	rs80336406	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	4q12		rs80336406-T	0.48	1E-13		7.42	z score increase	Affymetrix [9061022] (imputed)	N
1008	chr4	55498781	55498782	rs35484700	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	4q12	intergenic	rs35484700-C	0.4876	1E-9		0.02166894	[0.015-0.029] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1008	chr4	55500225	55500226	rs6831020	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	4q12		rs6831020-A	NR	7E-12		0.0164	[0.012-0.021] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1008	chr4	55500225	55500226	rs6831020	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	4q12	NR	rs6831020-A	NR	7E-10		0.017	[0.012-0.022] unit increase	Affymetrix [9000000] (imputed)	N
1008	chr4	55500225	55500226	rs6831020	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	4q12	NR	rs6831020-A	NR	2E-12		0.0185	[0.013-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
1008	chr4	55500225	55500226	rs6831020	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	4q12		rs6831020-?	NR	1E-13				NR [~ 8900000] (imputed)	N
1008	chr4	55501108	55501109	rs6554196	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	4q12	intergenic	rs6554196-G	0.3811	4E-9		0.02154709	[0.014-0.029] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1008	chr4	55501286	55501286	rs58548501	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	4q12	NR	rs58548501-TA	0.487023	1E-21		0.021120328	[0.017-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1008	chr4	55501286	55501286	rs58548501	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	4q12		rs58548501-TA	0.487039	4E-28		0.02434766	[0.02-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
1008	chr4	55501286	55501286	rs58548501	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	4q12	intergenic	rs58548501-TA	0.4858	3E-11		0.02374651	[0.017-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1008	chr4	55501286	55501286	rs58548501	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	4q12	intergenic	rs58548501-TA	0.4858	9E-11		0.02324545	[0.016-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1008	chr4	55501286	55501286	rs58548501	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	4q12	intergenic	rs58548501-TA	0.4858	1E-10		0.02292779	[0.016-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1008	chr4	55501286	55501286	rs58548501	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	4q12	intergenic	rs58548501-TA	0.4858	4E-12		0.0250047	[0.018-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1008	chr4	55501286	55501286	rs58548501	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	4q12	intergenic	rs58548501-TA	0.4858	2E-11		0.02405265	[0.017-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1008	chr4	55501727	55501728	rs13106834	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	4q12	NR	rs13106834-A	0.510393	1E-10		0.014005	[0.0097-0.0183] unit increase	NR [NR]	N
1008	chr4	55501727	55501728	rs13106834	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	4q12	NR	rs13106834-?	NR	9E-15				Affymetrix [~ 8270000] (imputed)	N
1008	chr4	55503193	55503194	rs723585	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	4q12		rs723585-A	0.514	2E-8				Affymetrix [10369434] (imputed)	N
1008	chr4	55503193	55503194	rs723585	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	4q12		rs723585-G	0.485616	6E-12		0.015270109	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1008	chr4	55503193	55503194	rs723585	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	4q12	NR	rs723585-G	0.483425	9E-19		0.016542	[0.013-0.02] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1008	chr4	55505359	55505360	rs2192158	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	4q12	NA	rs2192158-A	0.4492	7E-16		0.0137	[0.01-0.017] unit increase	NR [~ 27400000] (imputed)	N
1008	chr4	55505528	55505529	rs2192159	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	4q12		rs2192159-G	0.553986	2E-25		0.023355272	[0.019-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1008	chr4	55508663	55508664	rs7679314	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	4q12	NR	rs7679314-A	NR	4E-9		0.0142	[0.0095-0.0189] unit decrease	Affymetrix [9000000] (imputed)	N
1008	chr4	55509188	55509189	rs7684939	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	4q12		rs7684939-G	0.51	4E-15				Affymetrix [10369434] (imputed)	N
1008	chr4	55509188	55509189	rs7684939	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q12	NR	rs7684939-A	0.459851	3E-9				Affymetrix, Illumina [19905671] (imputed)	N
1008	chr4	55509747	55509748	rs11727273	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	4q12	NA	rs11727273-T	0.5549	4E-15		0.0151	[0.011-0.019] unit decrease	NR [~ 27400000] (imputed)	N
1008	chr4	55513274	55513275	rs11133338	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	4q12		rs11133338-C	NR	5E-10		0.0131	[0.009-0.0172] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1008	chr4	55521016	55521017	rs2159935	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	4q12	KIT	rs2159935-G	0.509689	5E-9		0.0114556	[0.0076-0.0153] unit decrease	Affymetrix [NR] (imputed)	N
1008	chr4	55521016	55521017	rs2159935	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	4q12		rs2159935-?	NR	5E-27				NR [~ 8900000] (imputed)	N
1008	chr4	55526250	55526251	rs2237035	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	4q12		rs2237035-T	NR	2E-12		0.0155	[0.011-0.02] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
1008	chr4	55526250	55526251	rs2237035	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	4q12	KIT	rs2237035-G	0.614115	1E-12		0.0138982	[0.01-0.018] unit decrease	Affymetrix [NR] (imputed)	N
1008	chr4	55526701	55526702	rs3819391	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	4q12		rs3819391-G	NR	2E-8		0.0093	[0.0062-0.0124] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
1008	chr4	55529199	55529199	rs11407544	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	4q12	KIT	rs11407544-TA	0.560695	6E-20		0.020549636	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1008	chr4	55534951	55534952	rs74997287	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	4q12	NR	rs74997287-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1008	chr4	55535335	55535336	rs2237029	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	4q12	KIT	rs2237029-G	0.398648	9E-12		0.0139601	[0.01-0.018] unit increase	Affymetrix [NR] (imputed)	N
1008	chr4	55535377	55535378	rs11345859	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	1,505 Ashkenazi Jewish founder cases, 2,553 Ashkenazi Jewish founder controls	NA	4q12	KIT	rs11345859-A	NR	5E-7		1.2987013	[NR]	Illumina [up to 9792010] (imputed)	N
1008	chr4	55536374	55536375	rs2237028	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q12	NR	rs2237028-G	0.404814	7E-17				Affymetrix, Illumina [23467995] (imputed)	N
1008	chr4	55538346	55538347	rs13128858	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	4q12		rs13128858-C	0.38	4E-8		5.5	z score increase	Affymetrix [9061022] (imputed)	N
1008	chr4	55538346	55538347	rs13128858	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	4q12	NR	rs13128858-C	0.3934	4E-8				NR [9056863] (imputed)	N
1008	chr4	55538525	55538526	rs78654087	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	4q12	NR	rs78654087-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
1008	chr4	55539252	55539253	rs2237026	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	4q12		rs2237026-G	NR	1E-13		0.016	[0.012-0.02] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
1008	chr4	55539263	55539264	rs12503461	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	4q12		rs12503461-T	NR	2E-8		0.0119	[0.0078-0.016] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
1008	chr4	55541878	55541879	rs2237025	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		4q12	KIT	rs2237025-T	0.444505	2E-13		0.0102433	[0.0075-0.013] unit increase	Affymetrix [12370749]	N
1008	chr4	55541878	55541879	rs2237025	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	Triglyceride levels	291,107 British ancestry individuals	NA	4q12	KIT	rs2237025-T	0.44301	3E-6		0.00994	[0.0058-0.0141] unit increase	Affymetrix [9463307] (imputed)	N
1008	chr4	55541878	55541879	rs2237025	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	High density lipoprotein cholesterol levels	291,107 British ancestry individuals	NA	4q12	KIT	rs2237025-T	0.44301	5E-7		0.00461859	[0.0028-0.0064] unit decrease	Affymetrix [9463307] (imputed)	N
1008	chr4	55548474	55548475	rs2855772	29494758	Liu L	2018-03-01	Br J Dermatol	Genome-wide association study identifies three novel susceptibility loci for systemic lupus erythematosus in Han Chinese.	Systemic lupus erythematosus	1,047 Han Chinese ancestry cases, 1,205 Han Chinese ancestry controls	3,509 Han Chinese ancestry cases, 8,246 Han Chinese ancestry controls	4q12	KIT	rs2855772-C	0.09772	1E-15		1.4	[NR]	NR [at least 493955] (imputed)	N
1008	chr4	55552329	55552330	rs13135792	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	4q12		rs13135792-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1009	chr4	55581750	55581751	rs60334317	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	4q12		rs60334317-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1009	chr4	55584432	55584433	rs2237014	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	4q12	NR	rs2237014-?	NR	2E-6		4.739	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1009	chr4	55685303	55685303	rs558821319	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	4q12		rs558821319-GT	0.00466100000000003	5E-15		0.14098951	[0.11-0.18] unit decrease	Affymetrix [93095623] (imputed)	N
1009	chr4	55685303	55685303	rs558821319	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	4q12		rs558821319-GT	0.00466500000000003	3E-13		0.13070007	[0.096-0.166] unit decrease	Affymetrix [93095623] (imputed)	N
1009	chr4	55685303	55685303	rs558821319	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	4q12	NR	rs558821319-I	0.004749	5E-16		0.130657	[0.099-0.162] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1009	chr4	55705570	55705571	rs2726629	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	4q12	NR	rs2726629-?	NR	9E-9				Affymetrix [~ 8270000] (imputed)	N
1009	chr4	55705570	55705571	rs2726629	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	4q12		rs2726629-?	NR	9E-9				NR [~ 8900000] (imputed)	N
1010	chr4	55751693	55751694	rs142210607	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q12	Intergenic	rs142210607-T	1.0	2E-6	(AA)	3.918	NR unit increase	Illumina [NR] (imputed)	N
1010	chr4	55775948	55775949	rs62304437	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	4q12		rs62304437-?	NR	9E-11				NR [~ 8900000] (imputed)	N
1010	chr4	55794468	55794469	rs114922507	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	4q12		rs114922507-T	0.044646	2E-9		0.032009523	[0.022-0.042] unit decrease	Affymetrix [93095623] (imputed)	N
1010	chr4	55810089	55810089	rs144593359	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	4q12	RP11-463H12.2	rs144593359-ATACTT	0.181107	1E-9		0.018083822	[0.012-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1011	chr4	55895879	55895880	rs4864530	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	4q12		rs4864530-?	NR	1E-14		0.0154278	[0.011-0.02] unit increase	Affymetrix [20259828] (imputed)	N
1011	chr4	55897390	55897391	rs7679094	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	4q12	KDR	rs7679094-C	0.583296	2E-12		0.0132111	[0.0095-0.0169] unit increase	NR [13737936] (imputed)	N
1011	chr4	55897410	55897411	rs7677709	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	4q12		rs7677709-?	NR	1E-14				NR [~ 8900000] (imputed)	N
1011	chr4	55958207	55958208	rs1458831	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	4q12		rs1458831-?	NR	3E-12				NR [~ 8900000] (imputed)	N
1012	chr4	55972945	55972946	rs34231037	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein KDR	5,361 Icelandic ancestry individuals	NA	4q12		rs34231037-G	0.02237	5E-53		0.955985	[0.83-1.08] unit decrease	Illumina [7506463] (imputed)	N
1012	chr4	55972945	55972946	rs34231037	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	4q12	KDR	rs34231037-G	0.034	1E-70	(Vascular endothelial growth factor receptor 2, KDR.3651.50.5)	1.15	[1.03-1.27] unit decrease	Affymetrix [10572788] (imputed)	N
1012	chr4	55972945	55972946	rs34231037	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	4q12	NR	rs34231037-?	NR	3E-9	(VEGFR-2)	0.722601	[0.48-0.96] unit decrease	Illumina [11901634] (imputed)	N
1012	chr4	55972945	55972946	rs34231037	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	4q12	KDR	rs34231037-G	0.02861446	5E-21	(EA, Vascular endothelial growth factor receptor 2)	1.165	[0.93-1.4] unit decrease	Affymetrix [509946]	N
1012	chr4	55979069	55979070	rs10020464	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	4q12	KDR	rs10020464-T	NR	3E-6		0.0282131	[0.016-0.04] unit increase	Illumina [13520550] (imputed)	N
1012	chr4	55979557	55979558	rs2305948	35264221	Caron B	2022-03-09	Genome Med	Integrative genetic and immune cell analysis of plasma proteins in healthy donors identifies novel associations involving primary immune deficiency genes.	VEGFR 2 plasma levels	400 French ancestry individuals	NA	4q12		rs2305948-C	NR	1E-6		0.122	[0.071-0.173] ng/mL decrease	Illumina [5201092] (imputed)	N
1012	chr4	55979557	55979558	rs2305948	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein KDR	5,361 Icelandic ancestry individuals	NA	4q12		rs2305948-T	0.06957	2E-32		0.432379	[0.36-0.5] unit increase	Illumina [7506463] (imputed)	N
1012	chr4	55979557	55979558	rs2305948	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q12	KDR	rs2305948-C	0.93140625	6E-21	(KDR, 3651_50_5)	0.45309228	[0.36-0.55] unit decrease	Illumina [> 1000000] (imputed)	N
1012	chr4	55979557	55979558	rs2305948	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	4q12	NR	rs2305948-T	0.099	2E-23	(Vascular endothelial growth factor receptor 2, KDR.3651.50.5)	0.41	[0.33-0.49] unit increase	Affymetrix [10572788] (imputed)	N
1012	chr4	56008476	56008477	rs1903068	28537267	Sapkota Y	2017-05-24	Nat Commun	Meta-analysis identifies five novel loci associated with endometriosis highlighting key genes involved in hormone metabolism.	Endometriosis	14,926 European ancestry cases, 189,715 European ancestry controls, 2,119 Japanese ancestry cases, 2,143 Japanese ancestry controls	NA	4q12	KDR	rs1903068-A	0.68	2E-11	(EA)	1.11	1.07-1.14	Affymetrix, Illumina [up to 6979035] (imputed)	N
1012	chr4	56008476	56008477	rs1903068	28537267	Sapkota Y	2017-05-24	Nat Commun	Meta-analysis identifies five novel loci associated with endometriosis highlighting key genes involved in hormone metabolism.	Endometriosis	14,926 European ancestry cases, 189,715 European ancestry controls, 2,119 Japanese ancestry cases, 2,143 Japanese ancestry controls	NA	4q12	KDR	rs1903068-A	0.68	1E-11		1.11	1.07-1.13	Affymetrix, Illumina [up to 6979035] (imputed)	N
1012	chr4	56010350	56010351	rs35213086	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	4q12		rs35213086-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1012	chr4	56012148	56012149	rs12331869	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	4q12	KDR	rs12331869-A	0.1789	8E-7		0.0162	[0.0097-0.0227] unit decrease	Affymetrix [19819130] (imputed)	N
1012	chr4	56012148	56012149	rs12331869	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	4q12	KDR	rs12331869-A	0.1789	9E-7		0.0151	[0.009-0.0212] unit decrease	Affymetrix [19819130] (imputed)	N
1012	chr4	56012148	56012149	rs12331869	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	4q12	KDR	rs12331869-A	0.1789	3E-9		0.0181	[0.012-0.024] unit decrease	Affymetrix [19819130] (imputed)	N
1012	chr4	56026913	56026914	rs34743464	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein KDR	5,361 Icelandic ancestry individuals	NA	4q12		rs34743464-T	0.1715	3E-11		0.164261	[0.12-0.21] unit decrease	Illumina [7506463] (imputed)	N
1012	chr4	56071488	56071489	rs9284956	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	4q12		rs9284956-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1013	chr4	56123104	56123105	rs77422711	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	4q12	SRD5A3	rs77422711-A	0.02	6E-10		1.85	[1.26-2.44] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1013	chr4	56123104	56123105	rs77422711	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	4q12	SRD5A3	rs77422711-A	0.0169	3E-9		1.7959	[1.2-2.39] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1013	chr4	56197512	56197513	rs34383258	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	4q12	SRD5A3	rs34383258-T	NR	9E-9		0.0252747	[0.017-0.034] unit increase	Affymetrix [319769] (imputed)	N
1013	chr4	56197512	56197513	rs34383258	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	4q12	SRD5A3	rs34383258-T	NR	3E-9		0.0261376	[0.018-0.035] unit increase	Affymetrix [319769] (imputed)	N
1013	chr4	56197512	56197513	rs34383258	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	4q12	SRD5A3	rs34383258-T	NR	2E-13		0.033646	[0.025-0.043] unit decrease	Affymetrix [321788] (imputed)	N
1013	chr4	56197512	56197513	rs34383258	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	4q12	SRD5A3	rs34383258-T	NR	7E-9		0.0254252	[0.017-0.034] unit decrease	Affymetrix [321016] (imputed)	N
1013	chr4	56202871	56202872	rs34929896	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	4q12	SRD5A3	rs34929896-T	NR	6E-9		0.0222869	[0.015-0.03] unit increase	Affymetrix [319769] (imputed)	N
1013	chr4	56202871	56202872	rs34929896	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	4q12	SRD5A3	rs34929896-T	NR	2E-9		0.022961	[0.015-0.03] unit increase	Affymetrix [319769] (imputed)	N
1013	chr4	56203198	56203199	rs10001607	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	4q12	SRD5A3	rs10001607-T	NR	2E-9		0.017064	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
1013	chr4	56203198	56203199	rs10001607	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	4q12	SRD5A3	rs10001607-T	NR	2E-9		0.0170953	[0.012-0.023] unit increase	Affymetrix [319769] (imputed)	N
1013	chr4	56203198	56203199	rs10001607	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	4q12	SRD5A3	rs10001607-T	NR	4E-11		0.0195514	[0.014-0.025] unit decrease	Affymetrix [321788] (imputed)	N
1013	chr4	56203198	56203199	rs10001607	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	4q12	SRD5A3	rs10001607-T	NR	4E-10		0.0178526	[0.012-0.023] unit decrease	Affymetrix [321016] (imputed)	N
1013	chr4	56204864	56204865	rs11935857	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	4q12	SRD5A3	rs11935857-A	NR	6E-13		0.0264255	[0.019-0.034] unit decrease	Affymetrix [319769] (imputed)	N
1013	chr4	56204864	56204865	rs11935857	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	4q12	SRD5A3	rs11935857-A	NR	4E-13		0.0265973	[0.019-0.034] unit decrease	Affymetrix [319769] (imputed)	N
1013	chr4	56204864	56204865	rs11935857	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	4q12	SRD5A3	rs11935857-A	NR	1E-10		0.0236085	[0.016-0.031] unit increase	Affymetrix [321016] (imputed)	N
1013	chr4	56215630	56215631	rs11133373	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	4q12	SRD5A3	rs11133373-G	NR	5E-10		0.0189514	[0.013-0.025] unit decrease	Affymetrix [319769] (imputed)	N
1013	chr4	56215630	56215631	rs11133373	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	4q12	SRD5A3	rs11133373-G	NR	6E-10		0.0188915	[0.013-0.025] unit decrease	Affymetrix [319769] (imputed)	N
1013	chr4	56215630	56215631	rs11133373	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	4q12	SRD5A3	rs11133373-G	NR	2E-9		0.0183566	[0.012-0.024] unit increase	Affymetrix [321016] (imputed)	N
1013	chr4	56226242	56226243	rs6554274	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	4q12	SRD5A3	rs6554274-A	NR	1E-15		0.026416	[0.02-0.033] unit increase	Affymetrix [319769] (imputed)	N
1013	chr4	56226242	56226243	rs6554274	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	4q12	SRD5A3	rs6554274-A	NR	3E-16		0.0270574	[0.021-0.034] unit increase	Affymetrix [319769] (imputed)	N
1013	chr4	56226242	56226243	rs6554274	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	4q12	SRD5A3	rs6554274-A	NR	3E-9		0.0195193	[0.013-0.026] unit decrease	Affymetrix [321016] (imputed)	N
1014	chr4	56231118	56231119	rs7663650	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	4q12	NR	rs7663650-?	NR	3E-12				Affymetrix [~ 8270000] (imputed)	N
1014	chr4	56245636	56245637	rs861029	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	4q12	NA	rs861029-T	0.7492	4E-11		0.0135	[0.0096-0.0174] unit decrease	NR [~ 27400000] (imputed)	N
1014	chr4	56245861	56245862	rs4455482	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	4q12	SRD5A3-AS1	rs4455482-T	NR	1E-13		0.0276951	[0.02-0.035] unit decrease	Affymetrix [321788] (imputed)	N
1014	chr4	56260661	56260662	rs693367	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	4q12		rs693367-G	NR	3E-8		0.012	[0.0077-0.0163] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
1014	chr4	56260661	56260662	rs693367	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	4q12	TMEM165	rs693367-A	0.659	2E-10		0.1777	[0.12-0.23] mmHg decrease	Affymetrix [NR] (imputed)	N
1014	chr4	56269682	56269683	rs28433072	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	4q12		rs28433072-C	0.46	4E-19				NR [NR] (imputed)	N
1014	chr4	56269682	56269683	rs28433072	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	4q12		rs28433072-C	0.46	1E-14		0.012	% increase	NR [NR] (imputed)	N
1014	chr4	56273286	56273287	rs56139168	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	4q12	TMEM165	rs56139168-C	NR	4E-14		0.0265553	[0.02-0.033] unit increase	Affymetrix [319769] (imputed)	N
1014	chr4	56273286	56273287	rs56139168	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	4q12	TMEM165	rs56139168-C	NR	8E-15		0.0273506	[0.02-0.034] unit increase	Affymetrix [319769] (imputed)	N
1014	chr4	56279529	56279530	rs62303684	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	4q12	TMEM165	rs62303684-A	NR	8E-19		0.0375804	[0.029-0.046] unit increase	Affymetrix [319769] (imputed)	N
1014	chr4	56279529	56279530	rs62303684	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	4q12	TMEM165	rs62303684-A	NR	1E-19		0.0385027	[0.03-0.047] unit increase	Affymetrix [319769] (imputed)	N
1014	chr4	56279529	56279530	rs62303684	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	4q12	TMEM165	rs62303684-A	NR	2E-10		0.0268996	[0.019-0.035] unit decrease	Affymetrix [321016] (imputed)	N
1014	chr4	56289784	56289785	rs6840236	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	4q12	TMEM165	rs6840236-C	NR	4E-15		0.0222819	[0.017-0.028] unit decrease	Affymetrix [319769] (imputed)	N
1014	chr4	56289784	56289785	rs6840236	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	4q12	TMEM165	rs6840236-C	NR	4E-15		0.0223353	[0.017-0.028] unit decrease	Affymetrix [319769] (imputed)	N
1014	chr4	56289784	56289785	rs6840236	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	4q12	TMEM165	rs6840236-C	NR	3E-11		0.0196088	[0.014-0.025] unit increase	Affymetrix [321788] (imputed)	N
1014	chr4	56289784	56289785	rs6840236	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	4q12	TMEM165	rs6840236-C	NR	1E-12		0.0201276	[0.015-0.026] unit increase	Affymetrix [321016] (imputed)	N
1014	chr4	56295872	56295873	rs62303689	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	4q12	TMEM165, CLOCK	rs62303689-A	NR	7E-16		0.0357933	[0.027-0.044] unit decrease	Affymetrix [321788] (imputed)	N
1014	chr4	56295872	56295873	rs62303689	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	4q12	NR	rs62303689-C	0.874913	3E-10		0.0119739	[0.0083-0.0156] unit increase	Affymetrix [16585854] (imputed)	N
1014	chr4	56297874	56297874	rs759308992	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	4q12	TMEM165, CLOCK	rs759308992-C	NR	7E-10		0.0204893	[0.014-0.027] unit increase	Affymetrix [323123] (imputed)	N
1014	chr4	56298193	56298194	rs6832769	18957941	Terracciano A	2008-11-24	Mol Psychiatry	Genome-wide association scan for five major dimensions of personality.	Personality dimensions	3,972 Sardinian individuals	3,903 individuals	4q12	CLOCK	rs6832769-A	0.73	2E-6	(agreeableness)	0.14	[NR] s.d. decrease	Affymetrix [362129]	N
1014	chr4	56298299	56298300	rs10462028	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	4q12	TMEM165, CLOCK	rs10462028-A	NR	2E-25		0.0313939	[0.026-0.037] unit increase	Affymetrix [319769] (imputed)	N
1014	chr4	56298299	56298300	rs10462028	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	4q12	TMEM165, CLOCK	rs10462028-A	NR	2E-26		0.0319456	[0.026-0.038] unit increase	Affymetrix [319769] (imputed)	N
1014	chr4	56298299	56298300	rs10462028	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	4q12	TMEM165, CLOCK	rs10462028-A	NR	5E-11		0.0198972	[0.014-0.026] unit increase	Affymetrix [321114] (imputed)	N
1014	chr4	56298299	56298300	rs10462028	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	4q12	TMEM165, CLOCK	rs10462028-A	NR	7E-12		0.0208011	[0.015-0.027] unit increase	Affymetrix [321169] (imputed)	N
1014	chr4	56298299	56298300	rs10462028	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	4q12	NR	rs10462028-?	NR	2E-23				Affymetrix [~ 8270000] (imputed)	N
1014	chr4	56298299	56298300	rs10462028	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	4q12		rs10462028-?	NR	1E-21				NR [~ 8900000] (imputed)	N
1014	chr4	56298299	56298300	rs10462028	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	4q12	NR	rs10462028-A	0.33	1E-22		0.019	[0.015-0.023] unit increase	Affymetrix [2446094] (imputed)	N
1014	chr4	56298299	56298300	rs10462028	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	4q12	NR	rs10462028-A	0.33	5E-8				Affymetrix [2446094] (imputed)	N
1014	chr4	56298299	56298300	rs10462028	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	4q12	NR	rs10462028-A	0.3237	3E-23		0.0189	[0.015-0.023] unit increase	NR [~ 27400000] (imputed)	N
1014	chr4	56298299	56298300	rs10462028	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	4q12	NR	rs10462028-A	0.3237	8E-11		0.0123	[0.0086-0.016] unit increase	NR [~ 27400000] (imputed)	N
1014	chr4	56316978	56316979	rs11133381	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	4q12	CLOCK	rs11133381-?	NR	5E-8		0.02748	[0.018-0.037] unit decrease	Illumina [4804024] (imputed)	N
1014	chr4	56323378	56323379	rs57826934	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	4q12	CLOCK	rs57826934-T	NR	2E-16		0.0255994	[0.019-0.032] unit decrease	Affymetrix [321788] (imputed)	N
1014	chr4	56323378	56323379	rs57826934	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	4q12	CLOCK	rs57826934-T	NR	4E-14		0.0227241	[0.017-0.029] unit decrease	Affymetrix [321016] (imputed)	N
1014	chr4	56323378	56323379	rs57826934	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	4q12		rs57826934-?	NR	1E-11				NR [~ 8900000] (imputed)	N
1014	chr4	56335296	56335297	rs35057645	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	4q12		rs35057645-A	NR	1E-11		0.0181	[0.013-0.023] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
1014	chr4	56335296	56335296	rs113727637	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	4q12	CLOCK	rs113727637-A	NR	4E-16		0.0250094	[0.019-0.031] unit decrease	Affymetrix [319769] (imputed)	N
1014	chr4	56335296	56335296	rs113727637	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	4q12	CLOCK	rs113727637-A	NR	6E-16		0.0248296	[0.019-0.031] unit decrease	Affymetrix [319769] (imputed)	N
1015	chr4	56367645	56367646	rs11724094	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	4q12	NR	rs11724094-A	0.371193	2E-8		0.017836	[0.012-0.024] unit decrease	NR [19129689] (imputed)	N
1015	chr4	56370367	56370368	rs13127906	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	4q12		rs13127906-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1015	chr4	56373473	56373474	rs73236149	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	4q12	CLOCK	rs73236149-T	NR	3E-8		0.0196302	[0.013-0.027] unit decrease	Affymetrix [321016] (imputed)	N
1015	chr4	56380667	56380667	rs34028624	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	4q12	CLOCK	rs34028624-TC	0.35655	3E-9		0.013762651	[0.0092-0.0183] unit increase	Affymetrix [93095623] (imputed)	N
1015	chr4	56387391	56387392	rs13115570	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	4q12		rs13115570-?	NR	4E-26				NR [~ 8900000] (imputed)	N
1015	chr4	56392812	56392813	rs13132420	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex x age interaction (4df test)	up to 43,776 European ancestry men aged <50, up to 50,526 European ancestry women aged <50, up to 69,944 European ancestry men aged >50, up to 88,129 European ancestry women aged >50	NA	4q12	NR	rs13132420-A	0.326424356057664	2E-8				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1015	chr4	56392812	56392813	rs13132420	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex interaction	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	4q12	NR	rs13132420-A	0.326424356057664	2E-6				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1015	chr4	56399647	56399648	rs13113518	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	4q12	CLOCK	rs13113518-T	0.636	8E-9		0.018	[0.012-0.024] unit decrease	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
1015	chr4	56408510	56408511	rs13134752	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	4q12		rs13134752-T	0.34	2E-9		5.98	z score increase	Affymetrix [9061022] (imputed)	N
1015	chr4	56424424	56424425	rs78829811	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	4q12	PDCL2	rs78829811-?	NR	6E-11		0.019166838	[0.013-0.025] unit increase	Illumina [27896057] (imputed)	N
1015	chr4	56424427	56424428	rs34658078	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	4q12	SRD5A3, TMEM165, CLOCK, PDCL2, NMU	rs34658078-?		4E-10				NR [7428630] (imputed)	N
1015	chr4	56432457	56432458	rs13142096	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	4q12	PDCL2	rs13142096-G	NR	8E-9		0.0185574	[0.012-0.025] unit decrease	Affymetrix [321169] (imputed)	N
1015	chr4	56443692	56443693	rs147788850	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	4q12	PDCL2	rs147788850-G	0.011032982551817	2E-6	(C_Gammaproteobacteria_HB)	1.40251	[0.83-1.98] unit decrease	Illumina [7711310] (imputed)	N
1015	chr4	56444320	56444321	rs13111128	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	4q12	NR	rs13111128-A	0.3031	7E-9		0.001299	[0.00081-0.00179] unit decrease	Affymetrix [NR] (imputed)	N
1015	chr4	56460084	56460085	rs13132085	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals	NA	4q12	NMU	rs13132085-A	0.2893	6E-9		0.0127622	[0.0085-0.0171] unit decrease	Affymetrix, Illumina [8603712] (imputed)	N
1015	chr4	56467213	56467214	rs13434995	22479202	Dastani Z	2012-03-29	PLoS Genet	Novel loci for adiponectin levels and their influence on type 2 diabetes and metabolic traits: a multi-ethnic meta-analysis of 45,891 individuals.	Adiponectin levels	29,347 European ancestry individuals	10,536 European ancestry individuals	4q12	NR	rs13434995-G	NR	9E-6		0.023	[NR] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1015	chr4	56471550	56471551	rs3805382	31630189	Casanova F	2019-10-20	Hum Mol Genet	A genome-wide association study implicates multiple mechanisms influencing raised urinary albumin-creatinine ratio.	Urinary albumin-to-creatinine ratio	437,027 European ancestry individuals	60,130 individuals	4q12	NMU	rs3805382-A	0.71	4E-8	(EA)	0.012	[0.0081-0.0159] unit increase	NR [12082474] (imputed)	N
1015	chr4	56471550	56471551	rs3805382	30220432	Haas ME	2018-09-06	Am J Hum Genet	Genetic Association of Albuminuria with Cardiometabolic Disease and Blood Pressure.	Urinary albumin excretion	382,500 European ancestry individuals	NA	4q12	NMU	rs3805382-A	0.711	4E-8		0.01015	[0.0065-0.0138] unit increase	Affymetrix [11709857] (imputed)	N
1015	chr4	56475337	56475338	rs3805383	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	4q12	NMU	rs3805383-A	NR	5E-15		0.0251139	[0.019-0.031] unit increase	Affymetrix [319769] (imputed)	N
1015	chr4	56475337	56475338	rs3805383	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	4q12	NMU	rs3805383-A	NR	9E-16		0.0258294	[0.02-0.032] unit increase	Affymetrix [319769] (imputed)	N
1015	chr4	56475337	56475338	rs3805383	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	4q12	NMU	rs3805383-A	NR	6E-12		0.022956	[0.016-0.029] unit decrease	Affymetrix [321788] (imputed)	N
1015	chr4	56475337	56475338	rs3805383	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	4q12	NMU	rs3805383-A	NR	2E-8		0.0180658	[0.012-0.024] unit decrease	Affymetrix [321016] (imputed)	N
1015	chr4	56478939	56478940	rs13139100	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	4q12	NR	rs13139100-A	0.339784	1E-10		0.012827	[0.0089-0.0167] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1015	chr4	56482749	56482750	rs3805389	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex x age interaction (4df test)	up to 43,776 European ancestry men aged <50, up to 50,526 European ancestry women aged <50, up to 69,944 European ancestry men aged >50, up to 88,129 European ancestry women aged >50	NA	4q12	NMU, PDCL2, CLOCK, TMEM165, KDR, SRD5A3, SRD5A3 -AS1, LOC644145, EXOC1, CEP135	rs3805389-A	0.278	2E-6				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1015	chr4	56482749	56482750	rs3805389	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex interaction	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	4q12	NMU	rs3805389-A	0.28	1E-6				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1015	chr4	56482749	56482750	rs3805389	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	4q12	NMU	rs3805389-A	0.28	7E-6	(women)	0.023	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1015	chr4	56482749	56482750	rs3805389	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	4q12	NMU	rs3805389-A	0.2784	5E-8	(EA, women)	0.0272	[0.017-0.037] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1015	chr4	56482749	56482750	rs3805389	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	4q12	NMU	rs3805389-A	0.2743	2E-7	(women)	0.0254	[0.016-0.035] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1016	chr4	56499910	56499911	rs28610159	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	4q12	NR	rs28610159-T	0.05	1E-7	(IFNalpha_CXCL10_of_CD56brightCD16n)			Illumina [5084123] (imputed)	N
1016	chr4	56510253	56510254	rs55796004	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	4q12	NMU	rs55796004-T	NR	4E-8		0.0154887	[0.0099-0.021] unit increase	Affymetrix [319769] (imputed)	N
1016	chr4	56519721	56519722	rs962354	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	4q12	PDCL2	rs962354-?	NR	7E-6	(tauro deoxycholate)	0.29469857	[0.17-0.42] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1016	chr4	56539557	56539558	rs73236188	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	4q12	NR	rs73236188-?	NR	2E-11				Affymetrix [~ 8270000] (imputed)	N
1016	chr4	56572193	56572193	rs35104894	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris color (b* coordinate)	329 South Asian ancestry individuals		4q12	intergenic	rs35104894-TA	0.357	6E-8		0.532	[0.34-0.72] unit increase	Illumina [640625] (imputed)	N
1016	chr4	56572193	56572193	rs35104894	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris color (a* coordinate)	329 South Asian ancestry individuals		4q12	intergenic	rs35104894-TA	0.356811	5E-6		0.45111	[0.26-0.64] unit increase	Illumina [640625] (imputed)	N
1017	chr4	56658777	56658778	rs895614	32279069	Rovira P	2020-04-12	Neuropsychopharmacology	Shared genetic background between children and adults with attention deficit/hyperactivity disorder.	Attention deficit hyperactivity disorder (persistent)	6,532 European ancestry cases, 15,874 European ancestry controls	NA	4q12	NR	rs895614-A	0.29	4E-6		1.13	[1.07-1.19]	Illumina [~ 1113287] (imputed)	N
1017	chr4	56659945	56659946	rs75938525	32277301	Okuda H	2020-04-10	Clin Exp Nephrol	Genome-wide association study identifies new loci for albuminuria in the Japanese population.	Urinary albumin excretion	7,805 Japanese ancestry individuals	NA	4q12	EXOC1, NMU	rs75938525-C	0.048	7E-10		31.06	[21.2-40.92] unit increase	Illumina [4962728] (imputed)	N
1017	chr4	56668430	56668431	rs753129	22005930	Hollingworth P	2011-10-18	Mol Psychiatry	Genome-wide association study of Alzheimer's disease with psychotic symptoms.	Psychosis in Alzheimer's disease	1,039 European ancestry cases with psychosis, 610 European ancestry cases without psychosis, 260 European, African American and Native American ancestry cases with psychosis and 125 European, African American and Native American ancestry cases without psychosis from 264 families	NA	4q12	AC110611.1	rs753129-?	0.76	3E-7		1.5151515	[NR]	Illumina [1882172] (imputed)	N
1017	chr4	56708318	56708319	rs181411540	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	4q12	Intergenic	rs181411540-T	NR	3E-6		0.0540402	[0.031-0.077] unit decrease	Illumina [13519193] (imputed)	N
1017	chr4	56715506	56715507	rs12507080	28247064	Deming Y	2017-02-28	Acta Neuropathol	Genome-wide association study identifies four novel loci associated with Alzheimer's endophenotypes and disease modifiers.	Cerebrospinal P-tau181p levels	3,146 individuals	NA	4q12	LOC644145, EXOC1	rs12507080-C	0.199	8E-6		0.03	[0.016-0.044] unit decrease	Illumina [7358575] (imputed)	N
1017	chr4	56751739	56751740	rs13117307	23817570	Shi Y	2013-06-30	Nat Genet	A genome-wide association study identifies two new cervical cancer susceptibility loci at 4q12 and 17q12.	Cervical cancer	Up to 1,364 Han Chinese ancestry cases, up to 3,028 Han Chinese ancestry controls	4,167 Han Chinese ancestry cases, 7,196 Han Chinese ancestry controls	4q12	EXOC1	rs13117307-T	0.10	3E-10	(Matched)	1.28	[1.19-1.38]	Affymetrix [563339]	N
1019	chr4	56908910	56908911	rs78492724	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Coronary artery disease in dyslipidemia	768 Korean ancestry cases, 19,999 Korean ancestry controls	NA	4q12		rs78492724-A	0.04356	7E-6		1.62	[1.31199999999999-2.0]	Affymetrix [7975321] (imputed)	N
1019	chr4	56915060	56915061	rs73155600	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	4q12		rs73155600-?	NR	5E-14				NR [~ 8900000] (imputed)	N
1019	chr4	56953645	56953646	rs10001537	30172743	Liang X	2018-08-30	Bone	Assessing the genetic correlations between early growth parameters and bone mineral density: A polygenic risk score analysis.	Femoral neck bone mineral density	2,286 European ancestry individuals	NA	4q12	CEP135	rs10001537-?	NR	6E-8				Affymetrix [753382]	N
1019	chr4	56953645	56953646	rs10001537	30172743	Liang X	2018-08-30	Bone	Assessing the genetic correlations between early growth parameters and bone mineral density: A polygenic risk score analysis.	Bone mineral density (hip)	2,286 European ancestry individuals	NA	4q12	CEP135	rs10001537-?	NR	8E-6				Affymetrix [753382]	N
1020	chr4	57036832	57036833	rs139602194	33824429	Fjukstad KK	2021-04-06	Pharmacogenomics J	Genetic variants associated with cardiometabolic abnormalities during treatment with selective serotonin reuptake inhibitors: a genome-wide association study.	HDL levels x SSRI levels interaction in schizophrenia or bipolar disorder	1,180 European ancestry individuals	NA	4q12	KIAA1211	rs139602194-T	0.02	1E-8		2.83	[1.86-3.80] unit increase	Illumina [NR] (imputed)	N
1020	chr4	57093203	57093204	rs7672202	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	4q12	NR	rs7672202-?	NR	2E-10				Affymetrix [NR]	N
1020	chr4	57118538	57118539	rs6830458	31504550	Bradfield JP	2019-07-05	Hum Mol Genet	A Trans-ancestral Meta-Analysis of Genome-Wide Association Studies Reveals Loci Associated with Childhood Obesity.	Childhood obesity	8,613 European ancestry cases, 3,213 African American cases, 69 Moroccan ancestry cases, 986 Hispanic/Latino cases, 124 East Asian ancestry cases, 12,696 European ancestry controls, 1,392 African American controls, 64 Moroccan ancestry controls, 993 Hispanic/Latino controls, 454 East Asian ancestry controls	NA	4q12	NR	rs6830458-C	NR	4E-6	(African)	1.0557	[0.61-1.51] unit decrease	Affymetrix, Illumina [up to 15123508] (imputed)	N
1020	chr4	57127847	57127848	rs6554340	26242244	Ma Y	2015-08-05	Sci Rep	Association of chromosome 5q21.3 polymorphisms with the exploratory eye movement dysfunction in schizophrenia.	Exploratory eye movement dysfunction in schizophrenia (responsive search score)	128 Han Chinese ancestry cases	NA	4q12	NR	rs6554340-?	NR	2E-6		1.476	[0.89-2.06] unit decrease	Illumina [498648]	N
1022	chr4	57334111	57334112	rs12505749	22837378	Wilk JB	2012-07-26	Am J Respir Crit Care Med	Genome-wide association studies identify CHRNA5/3 and HTR4 in the development of airflow obstruction.	Airflow obstruction	up to 3,368 European ancestry cases, up to 29,507 European ancestry controls	331 European ancestry cases, 2,550 European ancestry controls	4q12	SRP72	rs12505749-?	0.08	5E-6	(All)	1.27		Affymetrix, Illumina [up to 2500000] (imputed)	N
1022	chr4	57383770	57383771	rs74570061	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (90 or 130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	4q12	ARL9	rs74570061-?	NR	1E-6		0.186	[0.096-0.276] unit decrease	Illumina [at least 13000000] (imputed)	N
1022	chr4	57387374	57387375	rs111915800	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque score in type 2 diabetes	691 African American individuals	205 African American individuals	4q12	ARL9	rs111915800-?	NR	7E-6		0.835	[0.37-1.3] unit decrease	Illumina [at least 13000000] (imputed)	N
1023	chr4	57433195	57433196	rs114692817	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Thyroid cancer	762 European ancestry cases, 410,350 European ancestry controls	NA	4q12		rs114692817-T	0.014383	7E-7		2.3573785	NR	Affymetrix [7846216] (imputed)	N
1023	chr4	57477793	57477794	rs7699631	30363675	Cha EDK	2018-09-27	J Obes	Using Adipose Measures from Health Care Provider-Based Imaging Data for Discovery.	visceral adipose tissue/total adipose tissue ratio	2,545 European ancestry individuals	NA	4q12	NR	rs7699631-?	NR	2E-6		0.0172232	[0.010-0.024] unit decrease	Illumina [629675]	N
1023	chr4	57511503	57511504	rs4524451	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	4q12		rs4524451-?	NR	6E-8				NR [~ 8900000] (imputed)	N
1023	chr4	57522650	57522657	rs6148453	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	4q12	HOPX	rs6148453-G	0.462533	9E-11		0.014620225	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
1023	chr4	57522650	57522657	rs6148453	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	4q12	HOPX	rs6148453-G	0.462586	7E-13		0.016112236	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1023	chr4	57522650	57522657	rs6148453	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	4q12	HOPX	rs6148453-G	0.462602	1E-10		0.01438174	[0.01-0.0188] unit increase	Affymetrix [93095623] (imputed)	N
1023	chr4	57525107	57525108	rs58039421	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip	15 Asian ancestry cases, 13 European ancestry cases, 15 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	4q12	NR	rs58039421-?	NR	5E-6		3.69	[2.89-4.71]	Illumina [539000] (imputed)	N
1024	chr4	57544352	57544353	rs11945101	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	4q12	NR	rs11945101-C	0.324179	1E-9		0.0202076	[0.014-0.027] unit increase	NR [19129689] (imputed)	N
1024	chr4	57558088	57558089	rs9968446	30247649	Gonzalez-Serna D	2018-09-21	Rheumatology (Oxford)	Analysis of the genetic component of systemic sclerosis in Iranian and Turkish populations through a genome-wide association study.	Systemic sclerosis	764 Middle Eastern ancestry cases, 1,343 Middle Eastern ancestry controls	NA	4q12	HOPX, SPINK2	rs9968446-A	NR	8E-6		1.37	[1.19-1.57]	Illumina [5698748] (imputed)	N
1024	chr4	57569546	57569547	rs1824965	29738550	de Oliveira Otto MC	2018-05-08	PLoS One	Genome-wide association meta-analysis of circulating odd-numbered chain saturated fatty acids: Results from the CHARGE Consortium.	Circulating odd-numbered chain saturated fatty acid levels (C15:0)	11,494 European ancestry individuals	NA	4q12	NR	rs1824965-?	NR	1E-6		0.0031	[0.0019-0.0043] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1024	chr4	57598808	57598809	rs5858395	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Systolic blood pressure change trajectory	13,137 European ancestry individuals	2,451 European ancestry individuals	4q12	NR	rs5858395-CT	0.1974	2E-7		0.0842	[0.053-0.116] mmHg increase	Affymetrix, Illumina [NR] (imputed)	N
1024	chr4	57615591	57615592	rs144644158	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IGFBP7	5,355 Icelandic ancestry individuals	NA	4q12		rs144644158-C	0.0107	6E-12		0.605307	[0.43-0.78] unit increase	Illumina [7506463] (imputed)	N
1024	chr4	57623535	57623536	rs6819021	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SPINK2	5,366 Icelandic ancestry individuals	NA	4q12		rs6819021-T	0.4597	1E-41		0.251288	[0.21-0.29] unit increase	Illumina [7506463] (imputed)	N
1024	chr4	57623535	57623536	rs6819021	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	4q12	NR	rs6819021-T	0.473	2E-17	(Serine protease inhibitor Kazal-type 2, SPINK2.13405.61.3)	0.21	[0.15-0.27] unit increase	Affymetrix [10572788] (imputed)	N
1024	chr4	57648045	57648046	rs9992616	31219150	Ekenberg C	2019-06-13	J Infect Dis	Single nucleotide polymorphisms in HLA alleles are associated with HIV-1 viral load in demographically diverse, ART-naive participants from the START trial.	Pre-treatment viral load in HIV-1 infection	1,398 European ancestry individuals, 572 Black individuals, 418 Hispanic individuals, 13 Asian ancestry individuals, 39 individuals	NA	4q12	intergenic	rs9992616-C	0.705	3E-16		0.21	[0.16-0.26] unit decrease	Affymetrix [339439]	N
1024	chr4	57666036	57666037	rs1473430	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SPINK2	5,366 Icelandic ancestry individuals	NA	4q12		rs1473430-A	0.3718	7E-17		0.157744	[0.12-0.19] unit decrease	Illumina [7506463] (imputed)	N
1025	chr4	57676402	57676403	rs114439515	27021288	Brevik EJ	2016-03-29	Am J Med Genet B Neuropsychiatr Genet	Genome-wide analyses of aggressiveness in attention-deficit hyperactivity disorder.	Aggressiveness in attention deficit hyperactivity disorder	1,060 European ancestry adult cases	NA	4q12	SPINK2	rs114439515-A		9E-6		3.8041	[2.13-5.48] unit decrease	Illumina [7576458] (imputed)	N
1025	chr4	57680409	57680410	rs190972371	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q12	SPINK2	rs190972371-C	0.998	1E-6	(AA)	0.22	unit increase	Illumina [NR] (imputed)	N
1025	chr4	57687303	57687304	rs781542	26089329	Carty CL	2015-06-18	Stroke	Meta-Analysis of Genome-Wide Association Studies Identifies Genetic Risk Factors for Stroke in African Americans.	Stroke	up to 1,592 African American cases, up to 13,154 African American controls	NA	4q12	SPINK2	rs781542-A	0.32	1E-6	(cohort study)	1.35	[1.20-1.53]	Affymetrix, Illumina [up to 2600000] (imputed)	N
1025	chr4	57687356	57687357	rs34393987	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SPINK2	5,366 Icelandic ancestry individuals	NA	4q12		rs34393987-T	0.02617	1E-57		0.902178	[0.79-1.01] unit increase	Illumina [7506463] (imputed)	N
1025	chr4	57688590	57688591	rs9993023	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q12	SPINK2	rs9993023-G	0.970625	4E-29	(SPINK2, 13405_61_3)	0.7891938	[0.65-0.93] unit decrease	Illumina [> 1000000] (imputed)	N
1025	chr4	57689459	57689460	rs11941335	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	4q12	SPINK2	rs11941335-T	0.021	2E-33	(Serine protease inhibitor Kazal-type 2, SPINK2.13405.61.3)	1.0	[0.84-1.16] unit increase	Affymetrix [10572788] (imputed)	N
1025	chr4	57695125	57695126	rs1399002	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SPINK2	5,366 Icelandic ancestry individuals	NA	4q12		rs1399002-A	0.4073	6E-11		0.122501	[0.086-0.159] unit decrease	Illumina [7506463] (imputed)	N
1025	chr4	57707202	57707203	rs781567	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	4q12		rs781567-T	0.54074	9E-14		0.016866472	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1025	chr4	57707202	57707203	rs781567	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	4q12		rs781567-T	0.54074	5E-25		0.023247818	[0.019-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1025	chr4	57707202	57707203	rs781567	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	4q12		rs781567-T	0.540739	9E-26		0.023620933	[0.019-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1025	chr4	57708758	57708759	rs6554389	29678681	Matana A	2018-04-18	Genomics	Genome-wide meta-analysis identifies novel gender specific loci associated with thyroid antibodies level in Croatians.	Plasma anti-thyroglobulin and anti-thyroid peroxidase levels (bivariate analysis)	up to 1,596 Croatian ancestry women, up to 1,033 Croatian ancestry men	NA	4q12	REST	rs6554389-?	NR	3E-6	(women)	0.02	[0.012-0.028] unit increase	Illumina [5527232] (imputed)	N
1025	chr4	57715060	57715062	rs146974466	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	4q12		rs146974466-CAA	0.492347	3E-11		0.015218362	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1025	chr4	57717474	57717475	rs12648788	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	145,648 East Asian ancestry individuals	NA	4q12	NR	rs12648788-A	0.572525	1E-18		0.034197	[0.027-0.042] SD units increase	Affymetrix, Illumina [16710488] (imputed)	N
1025	chr4	57717763	57717764	rs7654263	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	4q12	NR	rs7654263-G	0.419784	9E-23		0.022288151	[0.018-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1025	chr4	57717763	57717764	rs7654263	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	4q12	NR	rs7654263-G	0.419787	9E-23		0.022309799	[0.018-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1025	chr4	57727310	57727311	rs7684253	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	4q12		rs7684253-C	0.448	1E-10				Affymetrix [10369434] (imputed)	N
1025	chr4	57727310	57727311	rs7684253	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	4q12		rs7684253-T	0.550849	1E-25		0.023946181	[0.019-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
1025	chr4	57727310	57727311	rs7684253	27322543	Gormley P	2016-06-20	Nat Genet	Meta-analysis of 375,000 individuals identifies 38 susceptibility loci for migraine.	Migraine	59,674 European ancestry cases, 316,078 European ancestry controls	NA	4q12	REST, SPINK2	rs7684253-?	0.55	3E-9		1.0416667	[1.03-1.06]	Affymetrix, Illumina, Perlegen [8094889] (imputed)	N
1025	chr4	57731445	57731446	rs9637714	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	4q12	NR	rs9637714-C	0.289005	5E-15		0.016305	[0.012-0.02] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1025	chr4	57731458	57731459	rs34228820	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	4q12		rs34228820-C	0.170892	1E-9		0.018802527	[0.013-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1025	chr4	57738344	57738345	rs62308110	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q12	NR	rs62308110-T	0.220711	1E-10				Affymetrix, Illumina [19872809] (imputed)	N
1025	chr4	57738490	57738491	rs62308111	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	4q12	NR	rs62308111-T	0.221457	2E-10		0.015386	[0.011-0.02] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
1025	chr4	57739924	57739925	rs6840805	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	4q12		rs6840805-T	0.25	4E-9		5.88	z score increase	Affymetrix [9061022] (imputed)	N
1025	chr4	57740333	57740334	rs6835108	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (global cognition) x major depressive disorder interaction (2df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	4q12		rs6835108-A	0.77	2E-8				NR [NR] (imputed)	N
1025	chr4	57740333	57740334	rs6835108	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking initiation (ever regular vs never regular)	up to 433,216 European ancestry individuals	NA	4q12	REST	rs6835108-G	0.215	2E-9		0.0167	[0.011-0.022] unit decrease	Illumina [~ 250000] (imputed)	N
1025	chr4	57740370	57740371	rs6857226	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	4q12	NR	rs6857226-A	0.2074	4E-8				NR [9056863] (imputed)	N
1025	chr4	57740532	57740533	rs73165962	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	4q12		rs73165962-A	0.145481	7E-19		0.028639682	[0.022-0.035] unit increase	Affymetrix [93095623] (imputed)	N
1025	chr4	57740666	57740667	rs56162812	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	4q12	NR	rs56162812-G	0.853471	6E-27		0.029447	[0.024-0.035] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
1025	chr4	57745480	57745481	rs4616820	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	417,580 European ancestry individuals	NA	4q12		rs4616820-C	0.535046	5E-10		0.012	[0.0081-0.0159] unit decrease	NR [7250403] (imputed)	N
1025	chr4	57747305	57747306	rs9684742	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	4q12	REST	rs9684742-T	0.3199	1E-8		0.015746057	[0.01-0.021] unit decrease	Affymetrix [~ 11515000] (imputed)	N
1025	chr4	57747797	57747798	rs4276341	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	4q12	REST	rs4276341-T	0.333	2E-12		0.0088	[0.0063-0.0113] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
1025	chr4	57747797	57747798	rs4276341	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	4q12	REST	rs4276341-T	0.3385	1E-10		0.01324254	[0.0092-0.0173] unit decrease	Illumina [9339358] (imputed)	N
1025	chr4	57749346	57749347	rs899632	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Smoking status (ever vs never smokers)	336,066 British ancestry individuals	NA	4q12	NR	rs899632-T	0.6133	5E-9		1.0307153	NR	NR [8968716] (imputed)	N
1025	chr4	57749362	57749363	rs899631	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	4q12	REST	rs899631-G	0.61313	2E-22		0.0184676	[0.015-0.022] unit decrease	NR [13737936] (imputed)	N
1025	chr4	57749362	57749363	rs899631	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	4q12		rs899631-?	NR	7E-25				NR [~ 8900000] (imputed)	N
1025	chr4	57750517	57750518	rs13116564	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	4q12		rs13116564-C	0.33	4E-8		5.5	z score increase	Affymetrix [9061022] (imputed)	N
1025	chr4	57761416	57761417	rs2412771	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	4q12		rs2412771-C	NR	2E-10		0.0107	[0.0074-0.014] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
1025	chr4	57761416	57761417	rs2412771	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	4q12		rs2412771-C	0.417135	3E-12		0.015828323	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1025	chr4	57761416	57761417	rs2412771	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	4q12		rs2412771-C	0.417173	2E-12		0.015910119	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1025	chr4	57761416	57761417	rs2412771	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q12	NR	rs2412771-T	0.588722	4E-13				Affymetrix, Illumina [22063850] (imputed)	N
1025	chr4	57761416	57761417	rs2412771	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	4q12	NR	rs2412771-T	0.583602	4E-15		0.015147	[0.011-0.019] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
1025	chr4	57761416	57761417	rs2412771	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q12	NR	rs2412771-C	0.413957	4E-12				Affymetrix, Illumina [23114412] (imputed)	N
1025	chr4	57761416	57761417	rs2412771	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	4q12		rs2412771-?	NR	4E-10				NR [~ 8900000] (imputed)	N
1025	chr4	57761416	57761417	rs2412771	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	4q12		rs2412771-?	NR	8E-8				NR [~ 8900000] (imputed)	N
1025	chr4	57765391	57765391	rs200062295	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	4q12		rs200062295-CT	NR	1E-11		0.021	[0.015-0.027] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
1025	chr4	57765730	57765731	rs55762216	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	4q12		rs55762216-C	NR	2E-39		0.0295	[0.025-0.034] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1025	chr4	57765730	57765731	rs55762216	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	4q12		rs55762216-C	NR	1E-16		0.0206	[0.016-0.026] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
1025	chr4	57765730	57765731	rs55762216	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 142,336 Japanese ancestry controls	NA	4q12	SPINK2, REST	rs55762216-?	NR	4E-9		0.0592318	[0.04-0.079] unit increase	Illumina [19707525] (imputed)	N
1025	chr4	57765730	57765731	rs55762216	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	4q12		rs55762216-?	NR	5E-13				NR [~ 8900000] (imputed)	N
1025	chr4	57765815	57765816	rs56281640	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	4q12		rs56281640-A	0.3931	1E-17		0.0290862	[0.022-0.036] unit decrease	Illumina [13478928] (imputed)	N
1025	chr4	57765815	57765816	rs56281640	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q12	NR	rs56281640-A	0.215618	5E-13				Affymetrix, Illumina [23467995] (imputed)	N
1025	chr4	57767326	57767327	rs7665147	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	4q12		rs7665147-A	NR	9E-18		0.0218	[0.017-0.027] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
1025	chr4	57767326	57767327	rs7665147	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	4q12		rs7665147-A	0.185427	8E-21		0.027244447	[0.022-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
1025	chr4	57767326	57767327	rs7665147	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	4q12		rs7665147-A	0.185905	7E-15		0.022139225	[0.017-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
1025	chr4	57767326	57767327	rs7665147	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	4q12	intergenic	rs7665147-A	0.1855	2E-11		0.03173043	[0.022-0.041] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1025	chr4	57769823	57769824	rs58408429	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	4q12		rs58408429-C	NR	3E-26		0.0244	[0.02-0.029] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1025	chr4	57769823	57769824	rs58408429	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	4q12	REST	rs58408429-C	0.185227	1E-19		0.025822718	[0.02-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
1025	chr4	57769823	57769824	rs58408429	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q12	NR	rs58408429-C	0.229036	3E-31				Affymetrix, Illumina [24649327] (imputed)	N
1025	chr4	57769823	57769824	rs58408429	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	4q12	NR	rs58408429-C	0.186557	9E-28		0.025822	[0.021-0.03] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1025	chr4	57769823	57769824	rs58408429	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	4q12	NR	rs58408429-C	0.186027	2E-13		0.018133	[0.013-0.023] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
1025	chr4	57769823	57769824	rs58408429	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	4q12	NR	rs58408429-C	0.186094	2E-22		0.023618	[0.019-0.028] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1025	chr4	57769823	57769824	rs58408429	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	4q12		rs58408429-?	NR	1E-27				NR [~ 8900000] (imputed)	N
1025	chr4	57770105	57770106	rs12645070	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	4q12		rs12645070-A	NR	8E-49		0.0218	[0.019-0.025] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1025	chr4	57770105	57770106	rs12645070	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	4q12		rs12645070-G	0.817	5E-17				Affymetrix [10369434] (imputed)	N
1025	chr4	57770105	57770106	rs12645070	32469254	Matsunaga H	2020-05-29	Circ Genom Precis Med	Transethnic Meta-analysis of Genome-wide Association Studies Identifies Three New Loci and Characterizes Population-specific Differences for Coronary Artery Disease.	Coronary artery disease	15,302 Japanese ancestry cases, 76,014 European and East Asian ancestry cases, 36,140 Japanese ancestry controls, 264,785 European and East Asian ancestry controls	NA	4q12	SPINK2, REST	rs12645070-A	0.23	3E-8		1.05	[1.02-1.08]	Illumina [5167567] (imputed)	N
1025	chr4	57770105	57770106	rs12645070	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	4q12	REST	rs12645070-A	0.1838	4E-10		0.02938713	[0.02-0.039] unit increase	Affymetrix [~ 2500000] (imputed)	N
1025	chr4	57774842	57774843	rs6853156	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	4q12		rs6853156-?	NR	2E-62				NR [~ 8900000] (imputed)	N
1025	chr4	57779566	57779567	rs781658	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	20,917 European ancestry cases, 440,906 European ancestry controls, 14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	4q12		rs781658-A	NR	6E-10		0.0612	[0.042-0.081] unit increase	Affymetrix, Illumina [25841367] (imputed)	N
1025	chr4	57779566	57779567	rs781658	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	4q12	REST	rs781658-?	NR	1E-15		0.0456692	[0.034-0.057] unit increase	Illumina [4804024] (imputed)	N
1025	chr4	57781346	57781347	rs7658601	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	4q12	REST	rs7658601-T	0.184934	1E-9		0.017611802	[0.012-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1025	chr4	57781346	57781347	rs7658601	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q12	NR	rs7658601-T	0.21393	1E-22				Affymetrix, Illumina [23472807] (imputed)	N
1025	chr4	57781753	57781754	rs781663	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	4q12		rs781663-G	0.389608516	6E-10		0.08463449	[0.058-0.111] unit increase	Illumina [13427135] (imputed)	N
1025	chr4	57786449	57786450	rs1713985	21909106	Arakawa S	2011-09-11	Nat Genet	Genome-wide association study identifies two susceptibility loci for exudative age-related macular degeneration in the Japanese population.	Age-related macular degeneration	827 Japanese ancestry cases, 3,323 Japanese ancestry controls	709 Japanese ancestry cases, 15,571 Japanese ancestry controls	4q12	C4orf14, REST, IGFBP7, POLR2B	rs1713985-G	0.29	2E-8		1.3	[1.19-1.42]	Illumina [457489]	N
1025	chr4	57790204	57790205	rs13108245	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	4q12		rs13108245-?	NR	5E-9		0.0122246	[0.0081-0.0163] unit decrease	NR [6912294] (imputed)	N
1025	chr4	57797413	57797414	rs3796529	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	4q12	REST	rs3796529-T	0.185565	3E-23		0.02933833	[0.024-0.035] unit increase	Affymetrix [93095623] (imputed)	N
1025	chr4	57797413	57797414	rs3796529	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q12	NR	rs3796529-T	0.229599	3E-47				Affymetrix, Illumina [24588908] (imputed)	N
1025	chr4	57797413	57797414	rs3796529	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	4q12	NR	rs3796529-T	0.186354	2E-32		0.027939	[0.023-0.033] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1025	chr4	57797413	57797414	rs3796529	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q12	NR	rs3796529-C	0.811743	1E-26				Affymetrix, Illumina [17210439] (imputed)	N
1025	chr4	57798188	57798189	rs2227901	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	4q12	REST	rs2227901-?	NR	2E-25		0.03054484	[0.025-0.036] unit increase	Illumina [27896057] (imputed)	N
1025	chr4	57798188	57798189	rs2227901	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	4q12	POLR2B, REST	rs2227901-A	0.39	3E-9		0.025	[0.013-0.037] unit increase	Affymetrix, Illumina [2704730] (imputed)	N
1026	chr4	57805085	57805089	rs151337818	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	4q12		rs151337818-A	0.39077	2E-23		0.0204993	[0.016-0.025] unit increase	Illumina [13479295] (imputed)	N
1026	chr4	57812764	57812765	rs6852997	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Platelet count	108,208 Japanese ancestry individuals	NA	4q12	REST, NOA1	rs6852997-?	NR	2E-11		0.02931	[0.021-0.038] unit decrease novel	Illumina [6108953] (imputed)	N
1026	chr4	57815765	57815766	rs13111442	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	4q12	NR	rs13111442-C	0.659	6E-10		0.00703873	[0.0048-0.0093] unit decrease	NR [9732723] (imputed)	N
1026	chr4	57819793	57819794	rs781669	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	4q12	RP11-738E22.3	rs781669-C	NR	2E-13		0.0215864	[0.016-0.027] unit increase	Affymetrix [321788] (imputed)	N
1026	chr4	57819793	57819794	rs781669	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	4q12	REST	rs781669-T	0.5236	3E-18		0.0164	[0.013-0.02] unit increase	Affymetrix [18391927] (imputed)	N
1026	chr4	57821308	57821309	rs708547	21106707	Gu J	2010-11-24	Hum Mol Genet	A genetic variant near the PMAIP1/Noxa gene is associated with increased bleomycin sensitivity.	Response to bleomycin (chromatid breaks)	673 European ancestry individuals	834 European ancestry individuals	4q12	C4orf14, REST	rs708547-A	0.24	9E-7		0.18	[0.11-0.24] unit decrease	Illumina [539437]	N
1026	chr4	57822868	57822869	rs17081933	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	4q12	NOA1	rs17081933-A	0.1979	1E-8		0.0399	[0.026-0.054] unit increase	Affymetrix [at least 7947838] (imputed)	N
1026	chr4	57823456	57823457	rs7680140	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	4q12		rs7680140-A	0.531	1E-10		0.007	[0.005-0.009] unit increase	NR [NR] (imputed)	N
1026	chr4	57823475	57823476	rs17081935	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	4q12	C4orf14	rs17081935-T	0.195	7E-17		0.031	[0.023-0.039] unit increase	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
1026	chr4	57823475	57823476	rs17081935	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	4q12	POLR2B	rs17081935-T	0.2	4E-11		0.03	[NR] unit increase	Affymetrix, Illumina [2834208] (imputed)	N
1026	chr4	57824931	57824932	rs7687767	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	4q12	REST	rs7687767-G	0.200133	3E-6		1.04	[1.03-1.06]	NR [8126035] (imputed)	N
1026	chr4	57825335	57825336	rs6554401	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	4q12		rs6554401-G	NR	1E-8		0.0132	[0.0087-0.0177] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
1026	chr4	57825592	57825593	rs10020462	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	4q12	NR	rs10020462-?	NR	5E-8	(cerebellar vermal lobules VIII X)			NR [9227495] (imputed)	N
1026	chr4	57829484	57829484	rs200793698	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	4q12	RP11-738E22.3	rs200793698-GA	0.539263	6E-11		0.0146175	[0.011-0.019] unit increase	Affymetrix [93095623] (imputed)	N
1026	chr4	57834085	57834086	rs34091656	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	4q12	NOA1	rs34091656-G	0.311916	1E-10		0.015981453	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1026	chr4	57835968	57835969	rs35514852	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Automobile speeding propensity	404,291 European ancestry individuals	NA	4q12	NOA1	rs35514852-T	0.3574	1E-10		0.015113897	[0.011-0.02] unit decrease	Affymetrix [11514463] (imputed)	N
1026	chr4	57838582	57838583	rs17087335	26343387	Nikpay M	2015-09-07	Nat Genet	A comprehensive 1,000 Genomes-based genome-wide association meta-analysis of coronary artery disease.	Coronary artery disease	42,096 European ancestry cases, 361 African American cases, 758 Hispanic American cases, 12,658 South Asian ancestry cases, 1,802 Lebanese ancestry cases, 3,614 East Asian ancestry cases, 99,121 European ancestry controls, 2,778 African American controls, 3,337 Hispanic American controls, 12,899 South Asian ancestry controls, 466 Lebanese ancestry controls, 7,709 East Asian ancestry controls	NA	4q12	NOA1, REST	rs17087335-T	0.21	5E-8	(additive model)	1.06	[1.04-1.09]	Affymetrix, Illumina [8600000] (imputed)	N
1026	chr4	57838998	57838999	rs2412772	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	154,355 East Asian ancestry individuals	NA	4q12		rs2412772-C	0.470879	4E-9		0.0199892	[0.013-0.027] unit increase	Illumina [13479091] (imputed)	N
1026	chr4	57839050	57839051	rs72627509	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q12	NR	rs72627509-G	0.224243	9E-13				Affymetrix, Illumina [24246363] (imputed)	N
1026	chr4	57839050	57839051	rs72627509	28714975	Nelson CP	2017-07-17	Nat Genet	Association analyses based on false discovery rate implicate new loci for coronary artery disease.	Coronary artery disease (myocardial infarction, percutaneous transluminal coronary angioplasty, coronary artery bypass grafting, angina or chromic ischemic heart disease)	18,467 European and unknown ancestry cases, 45,264 European and unknown ancestry controls	57,347 European and unknown ancestry cases, 219,521 European and unknown ancestry controls	4q12	REST, NOA1	rs72627509-G	0.199	8E-8		1.06	[1.03-1.08]	Affymetrix [9149595] (imputed)	N
1026	chr4	57839279	57839280	rs57265257	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	4q12	NR	rs57265257-T	0.187577	1E-13		0.017249	[0.013-0.022] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
1026	chr4	57839279	57839280	rs57265257	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	4q12	NOA1, POLR2B	rs57265257-A	0.799	2E-9		0.0468	[0.032-0.062] unit decrease	NR [8041861] (imputed)	N
1026	chr4	57839279	57839280	rs57265257	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	4q12	NOA1	rs57265257-A	0.8109	1E-7		0.0433	[0.027-0.059] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1026	chr4	57857187	57857188	rs3733309	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	4q12	POLR2B	rs3733309-A	0.59	2E-8		0.021	[0.0092-0.0328] unit decrease	Affymetrix, Illumina [2704730] (imputed)	N
1026	chr4	57858236	57858237	rs1315005	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter alcoholic beverage consumption	336,448 European ancestry individuals	39,924 European ancestry individuals	4q12	POLR2B	rs1315005-G	0.3021	2E-6		0.0052	[0.003-0.0074] unit increase	Affymetrix [~ 7740000] (imputed)	N
1026	chr4	57879791	57879792	rs4865169	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	4q12	NR	rs4865169-T	0.5239	7E-6	(EA)	0.0278	[0.016-0.04] unit increase	Illumina [~ 11800000] (imputed)	N
1026	chr4	57885962	57885963	rs10016631	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	White blood cell count	107,964 Japanese ancestry individuals	NA	4q12	POLR2B	rs10016631-?	NR	1E-8		0.02431	[0.016-0.033] unit decrease novel	Illumina [6108953] (imputed)	N
1026	chr4	57886492	57886493	rs1713984	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	4q12		rs1713984-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1026	chr4	57893769	57893770	rs73242632	28468790	Agopian AJ	2017-06-01	Circ Cardiovasc Genet	Genome-Wide Association Studies and Meta-Analyses for Congenital Heart Defects.	Congenital heart disease (maternal effect)	1,119 European ancestry trios	NA	4q12	POLR2B, IGFBP7	rs73242632-?	NR	8E-6		1.969446	[1.46-2.65]	Illumina [at least 4756722] (imputed)	N
1026	chr4	57905806	57905807	rs11133474	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	4q12		rs11133474-?	NR	2E-18		0.0199666	[0.016-0.024] unit decrease	Affymetrix [20259828] (imputed)	N
1026	chr4	57905806	57905807	rs11133474	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	4q12	IGFBP7	rs11133474-C	0.658829	7E-10		0.0220323	[0.015-0.029] unit decrease	NR [17166351] (imputed)	N
1026	chr4	57913252	57913253	rs114518130	28763065	Xia K	2017-08-01	Transl Psychiatry	Genome-wide association analysis identifies common variants influencing infant brain volumes.	Brain volume in infants (grey matter)	295 European, African American, Asian, Native American and other admixed ancestry infants, 17 European, African American, Asian, Native American and other admixed ancestry sibling pairs, 116 European, African American, Asian, Native American and other admixed ancestry twin pairs.	NA	4q12	IGFBP7	rs114518130-G	NR	4E-10		6.13	percent increase	Affymetrix [8762422] (imputed)	N
1026	chr4	57916888	57916889	rs35769988	29460428	Gelernter J	2018-02-20	Alcohol Clin Exp Res	Genomewide association study of alcohol dependence and related traits in a Thai population.	Alcohol consumption (max-drinks)	1,045 Thai ancestry individuals	NA	4q12	IGFBP7	rs35769988-A	0.4075	9E-6		0.2141	[0.12-0.31] unit decrease	Illumina [at least 4683137] (imputed)	N
1027	chr4	57937861	57937862	rs13141016	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	4q12	POLR2B	rs13141016-?	NR	8E-7	(pantothenic acid)	0.18836427	[0.11-0.26] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1027	chr4	57939862	57939863	rs10049992	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	4q12	NR	rs10049992-G	0.201848923285199	8E-6	(IGP73)	0.2007	[0.11-0.29] unit decrease	Illumina [~ 2500000] (imputed)	N
1027	chr4	57942322	57942323	rs1718849	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	4q12	IGFBP7	rs1718849-C	0.766	5E-38	(Insulin-like growth factor-binding protein 7, IGFBP7.3320.49.2)	0.36	[0.3-0.42] unit decrease	Affymetrix [10572788] (imputed)	N
1027	chr4	57943152	57943153	rs1718845	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	4q12	IGFBP7	rs1718845-A	0.2973	5E-9		0.0963	[0.064-0.129] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1027	chr4	57948223	57948224	rs1718859	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	4q12	IGFBP7	rs1718859-T	0.415487	5E-9		0.0116606	[0.0077-0.0156] unit decrease	Affymetrix [NR] (imputed)	N
1027	chr4	57949516	57949517	rs1718860	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IGFBP7	5,355 Icelandic ancestry individuals	NA	4q12		rs1718860-G	0.2955	6E-43		0.263526	[0.23-0.3] unit increase	Illumina [7506463] (imputed)	N
1027	chr4	57949516	57949517	rs1718860	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q12	IGFBP7	rs1718860-A	0.70390625	6E-28	(IGFBP7, 3320_49_2)	0.28713655	[0.24-0.34] unit decrease	Illumina [> 1000000] (imputed)	N
1027	chr4	57951467	57951468	rs2412776	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	4q12	UBE2CP3, IGFBP7	rs2412776-G	0.1919598	6E-17	(EA, Insulin-like growth factor-binding protein 7)	0.4429	[0.34-0.54] unit increase	Affymetrix [509946]	N
1027	chr4	57954558	57954559	rs11722333	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia x sex interaction	31,567 European ancestry cases, 37,494 European ancestry controls, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	NA	4q12	IGFBP7	rs11722333-C	0.5414	7E-6		0.119	[0.067-0.171] unit increase	NR [NR] (imputed)	N
1027	chr4	57955088	57955089	rs7690671	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	4q12	NR	rs7690671-A	NR	4E-9		0.0152	[0.01-0.02] unit decrease	Affymetrix [9000000] (imputed)	N
1027	chr4	57961898	57961899	rs73242648	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	4q12	NR	rs73242648-C		3E-9		0.15	[0.091-0.209] unit increase	NR [NR]	N
1027	chr4	57976956	57976957	rs4075349	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x long total sleep time interaction (2df test)	2,913 African American long sleepers, 358 Chinese ancestry long sleepers, 110 Asian ancestry long sleepers, 7,583 European ancestry long sleepers, 1,036 Hispanic/Latino long sleepers, up to 11,862 African American controls, 1,432 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,744 European ancestry controls, 4,066 Hispanic/Latino controls	at least 214 African American long sleepers, 616 East Asian ancestry long sleepers, up to 6,657 European ancestry long sleepers, 2,457 Hispanic long sleepers, at least 913 African American controls, 2,517 East Asian ancestry controls, up to 26,868 European ancestry controls, 9,870 Hispanic controls	4q12	IGFBP7-AS1	rs4075349-?	NR	9E-9		0.5606	[0.22-0.9] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1028	chr4	58086831	58086832	rs17087703	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,963 Sub-Saharan African ancestry females, 3,931 Sub-Saharan African ancestry males	NA	4q12		rs17087703-G	0.826728	4E-6		0.0114513	[0.0047-0.0182] unit decrease	Illumina [7666802] (imputed)	N
1028	chr4	58088681	58088682	rs7698838	32755526	D'Urso S	2020-08-05	Twin Res Hum Genet	Septic Shock: A Genomewide Association Study and Polygenic Risk Score Analysis.	Septic shock resolution	459 European ancestry cases, 34 European ancestry controls	NA	4q12	intergenic	rs7698838-T	0.93	6E-7		6.666666	NR	Illumina [7590211] (imputed)	N
1028	chr4	58131143	58131144	rs112483299	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	4q12	Intergenic	rs112483299-T	NR	4E-6		0.0264086	[0.015-0.038] unit decrease	Illumina [13519193] (imputed)	N
1028	chr4	58148385	58148386	rs6832720	25293881	Patel YM	2014-10-07	Cancer Epidemiol Biomarkers Prev	The contribution of common genetic variation to nicotine and cotinine glucuronidation in multiple ethnic/racial populations.	Cotinine glucuronidation	437 European ancestry current smoker individuals, 364 African American current smoker individuals, 453 Latino current smoker individuals, 674 Japanese ancestry current smoker individuals, 311 Native Hawaiian ancestry current smoker individuals	NA	4q12	OC255130	rs6832720-A	NR	7E-9		0.0585	[NR] unit decrease	Illumina [11892802] (imputed)	N
1029	chr4	58311456	58311457	rs12642652	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Cerebellum white matter volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	4q12	LOC101928851	rs12642652-?		5E-7				Illumina [4322238] (imputed)	N
1030	chr4	58351064	58351064	rs143409503	29563502	Fejzo MS	2018-03-21	Nat Commun	Placenta and appetite genes GDF15 and IGFBP7 are associated with hyperemesis gravidarum.	Severity of nausea and vomiting of pregnancy	14,988 European ancestry individuals with no NVP, 14,292 European ancestry individuals with slight NVP, 17,786 European individuals with moderate NVP, 5,445 European ancestry individuals with severe NVP, 1,220 European ancestry individuals with very severe NVP	NA	4q12	IGFBP7	rs143409503-AGC	0.34	9E-24		0.072	[0.058-0.086] unit decrease	Illumina [11956931] (imputed)	N
1030	chr4	58351064	58351064	rs143409503	29563502	Fejzo MS	2018-03-21	Nat Commun	Placenta and appetite genes GDF15 and IGFBP7 are associated with hyperemesis gravidarum.	Hyperemesis gravidarum	1,306 European ancestry cases, 15,756 European ancestry controls without nausea and vomiting of pregnancy (NVP)	899 European ancestry cases, 749 European ancestry controls with and without nausea and vomiting of pregnancy (NVP)	4q12	IGFBP7	rs143409503--	NR	9E-12	(proxy rs4865234)	1.33	[1.23-1.62]	Illumina [12687884] (imputed)	N
1030	chr4	58355204	58355205	rs547712555	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Alanine aminotransferase levels	387,859 British ancestry individuals, 10,635 Asian or Asian British individuals, 7,468 Black or Black British individuals, 2,338 Chinese ancestry individuals	NA	4q12	NR	rs547712555-?	NR	3E-8	(East Asian)	2.1012719	[1.36-2.85] unit decrease	Affymetrix [21347608] (imputed)	N
1030	chr4	58371922	58371923	rs78030545	27021288	Brevik EJ	2016-03-29	Am J Med Genet B Neuropsychiatr Genet	Genome-wide analyses of aggressiveness in attention-deficit hyperactivity disorder.	Aggressiveness in attention deficit hyperactivity disorder	1,060 European ancestry adult cases	NA	4q12	Intergenic	rs78030545-T		2E-6		3.7706	[2.22-5.32] unit decrease	Illumina [7576458] (imputed)	N
1030	chr4	58380321	58380322	rs11133504	25082827	Julia A	2014-07-31	Hum Mol Genet	A genome-wide association study identifies a novel locus at 6q22.1 associated with ulcerative colitis.	Ulcerative colitis	up to 7,483 European ancestry cases, up to 21,211 European ancestry controls	1,073 European ancestry cases, 1,279 European ancestry controls	4q12	intergenic	rs11133504-?	0.86	1E-7	(Southern European)	1.33	[1.14-1.59]	Illumina [546271]	N
1031	chr4	58464352	58464353	rs7693389	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	4q12	LOC255130, SRIL	rs7693389-G	0.084	7E-6		2.66	[1.71-4.14]	Illumina [1556551]	N
1031	chr4	58471221	58471222	rs77548969	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	4q12	NR	rs77548969-?	NR	3E-6		4.649	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1032	chr4	58671635	58671636	rs979119	31991592	Coltell O	2020-01-24	Nutrients	Genome-Wide Association Study for Serum Omega-3 and Omega-6 Polyunsaturated Fatty Acids: Exploratory Analysis of the Sex-Specific Effects and Dietary Modulation in Mediterranean Subjects with Metabolic Syndrome.	Serum linoleic acid concentration in metabolic syndrome	426 Mediterranean individuals	NA	4q12	intergenic	rs979119-A	0.082	1E-6		1.675	[1-2.35] unit increase	Illumina [621723]	N
1032	chr4	58694197	58694198	rs62313301	30796134	Soderholm M	2019-02-22	Neurology	Genome-wide association meta-analysis of functional outcome after ischemic stroke.	3-month functional outcome in ischaemic stroke (modified Rankin score)	3,830 European and unknown ancestry modified Rankin score 0-2 cases, 2,335 European and unknown ancestry modified Rankin score 3-6 cases	NA	4q12	intergenic	rs62313301-T	0.057	7E-6	(adjusted for severity)	1.66	[1.44-1.88]	Affymetrix, Illumina [~ 8500000] (imputed)	N
1033	chr4	58749617	58749618	rs78598527	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	4q12		rs78598527-T	NR	9E-6		2.699	[1.53-3.86] unit increase	Illumina [NR] (imputed)	N
1034	chr4	58872911	58872912	rs144575900	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q12	Intergenic	rs144575900-G	0.991	3E-6	(AA)	0.469	NR unit decrease	Illumina [NR] (imputed)	N
1034	chr4	58885244	58885245	rs270481	28957384	Kim SK	2017-09-28	PLoS One	Two genetic loci associated with ankle injury.	Ankle injury	1,421 European ancestry cases, 154 Hispanic/Latino cases, 121 East Asian ancestry cases, 81,843 European ancestry controls, 8,406 Hispanic/Latino controls, 7,397 East Asian ancestry controls	NA	4q12	NR	rs270481-A	NR	8E-7		1.2299		Affymetrix [8183964] (imputed)	N
1035	chr4	59007857	59007858	rs79897328	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q12	NR	rs79897328-C	0.02439	1E-8	(HEBP1)	0.05076	NR unit increase	Illumina [1671387] (imputed)	N
1035	chr4	59008411	59008412	rs10517437	20125193	Cirulli ET	2010-02-03	Eur J Hum Genet	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American individuals, up to 74 South Asian ancestry individuals	NA	4q12	intergenic	rs10517437-?	NR	4E-6	(Delayed Story Recall)			Illumina [up to 563855]	N
1035	chr4	59044794	59044795	rs4865309	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q12	Intergenic	rs4865309-G	0.76	4E-6	(AA)	0.1	NR unit decrease	Illumina [NR] (imputed)	N
1036	chr4	59213844	59213845	rs17218161	23829686	Ding L	2013-07-05	Hum Genomics	Rank-based genome-wide analysis reveals the association of ryanodine receptor-2 gene variants with childhood asthma among human populations.	Asthma (childhood onset)	429 European ancestry affected offspring trios	52 African American affected offspring trios, 46 Hispanic affected offspring trios	4q12	intergenic	rs17218161-?	NR	2E-8				Affymetrix [786195]	N
1037	chr4	59251077	59251078	rs10026457	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	4q12	Intergenic	rs10026457-T	0.3024	3E-8		0.0117	[0.0076-0.0158] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1037	chr4	59305131	59305132	rs1869463	22969067	Mishra A	2012-09-13	Invest Ophthalmol Vis Sci	Genetic variants near PDGFRA are associated with corneal curvature in Australians.	Corneal curvature	1,788 European ancestry twins and family members, 1,013 European ancestry unrelated individuals	NA	4q12	intergenic	rs1869463-A	NR	9E-6		0.0331	[0.019-0.048] mm decrease	Illumina [1704858] (imputed)	N
1038	chr4	59399992	59399993	rs184151593	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cerebral amyloid deposition in APOEe4 non-carriers (PET imaging)	370 European and other ancestry APOEe4 non-carriers	NA	4q13.1	LOC255130	rs184151593-C	0.01	8E-7		0.3861	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
1038	chr4	59457084	59457085	rs1021487	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	4q13.1	LOC10050716	rs1021487-C	NR	1E-6	(East Asian)	1.086	[1.05-1.12]	Illumina [6627481] (imputed)	N
1038	chr4	59457084	59457085	rs1021487	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	4q13.1	intergenic	rs1021487-T	NR	1E-7	(Chinese)	1.105	[1.07-1.14]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1038	chr4	59490358	59490359	rs146223313	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Systolic blood pressure (long-term average)	5,304 African American individuals, 13,137 European ancestry individuals, 1,317 Hispanic individuals, 1,439 admixed individuals, 703 Chinese ancestry individuals	6,500 African American individuals, 2,451 European ancestry individuals, 2,869 Hispanic individuals	4q13.1	NR	rs146223313-A	0.0146	3E-7		21.09	[12.99-29.19] mmHg increase	Affymetrix, Illumina [NR] (imputed)	N
1038	chr4	59494615	59494615	rs149284418	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Word spelling	3,399 European ancestry individuals	NA	4q13.1	Intergenic	rs149284418-C	0.610145714	5E-6		0.130816	[0.075-0.187] unit increase	Illumina [6969139] (imputed)	N
1038	chr4	59503725	59503726	rs282708	22076464	Ellinghaus E	2011-11-11	Leukemia	Identification of germline susceptibility loci in ETV6-RUNX1-rearranged childhood acute lymphoblastic leukemia.	Acute lymphoblastic leukemia (childhood)	419 European ancestry ETV6-RUNX1 positive cases, 474 European ancestry controls	951 European ancestry ETV6-RUNX1 positive cases, 326 European ancestry ETV6-RUNX1 negative cases, 3,061 European ancestry controls	4q13.1	intergenic	rs282708-A	0.41	8E-6		1.23	[1.12-1.35 ]	Affymetrix [355750]	N
1038	chr4	59503725	59503726	rs282708	22076464	Ellinghaus E	2011-11-11	Leukemia	Identification of germline susceptibility loci in ETV6-RUNX1-rearranged childhood acute lymphoblastic leukemia.	Acute lymphoblastic leukemia (childhood)	419 European ancestry ETV6-RUNX1 positive cases, 474 European ancestry controls	951 European ancestry ETV6-RUNX1 positive cases, 326 European ancestry ETV6-RUNX1 negative cases, 3,061 European ancestry controls	4q13.1	intergenic	rs282708-A	0.4	5E-6	(ETV6-RUNX1 positive, Northern European)			Affymetrix [355750]	N
1039	chr4	59512469	59512470	rs17089520	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Frontal pole volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	4q13.1	NR	rs17089520-?		6E-6				Illumina [4322238] (imputed)	N
1039	chr4	59512590	59512591	rs4865342	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Medial orbital frontal cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	4q13.1	NR	rs4865342-?		4E-6				Illumina [4322238] (imputed)	N
1039	chr4	59588227	59588228	rs2412930	28283553	Srinivasan L	2017-03-10	Arch Dis Child Fetal Neonatal Ed	Genome-wide association study of sepsis in extremely premature infants.	Sepsis in extremely premature infants	155 European ancestry cases, 190 non-European ancestry cases, 184 European ancestry controls, 222 non-European ancestry controls	NA	4q13.1	intergenic	rs2412930-?	NR	1E-6				Illumina [7200000] (imputed)	N
1040	chr4	59668828	59668829	rs115650236	25763902	Draaken M	2015-03-12	PLoS Genet	Genome-wide association study and meta-analysis identify ISL1 as genome-wide significant susceptibility gene for bladder exstrophy.	Classic bladder exstrophy	208 European ancestry cases, 1,703 European ancestry controls	NA	4q13.1	NR	rs115650236-G	0.026	5E-6		5.11	[2.54-10.26]	Illumina [7261187] (imputed)	N
1040	chr4	59737471	59737471	rs201958930	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	4q13.1	intergenic	rs201958930-G	NR	1E-7	(EA)	0.5923	[0.38-0.81] unit increase	Illumina [~ 9000000] (imputed)	N
1041	chr4	59797011	59797012	rs78704734	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	4q13.1	LOC255130	rs78704734-G	0.01	2E-6		0.3733	[0.22-0.52] unit increase	Illumina [~ 9000000] (imputed)	N
1041	chr4	59800291	59800292	rs13118804	31586183	Niazi Y	2019-10-04	Mutagenesis	Distinct pathways associated with chromosomal aberration frequency in a cohort exposed to genotoxic compounds compared to general population.	Chromosomal aberration frequency (chromatid type) in genotoxic compound exposure	607 European and unknown ancestry individuals	NA	4q13.1	NR	rs13118804-?	NR	4E-6		0.17	[0.1-0.25] unit decrease	Illumina [> 2600000] (imputed)	N
1041	chr4	59824486	59824487	rs9715521	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque score in type 2 diabetes	691 African American individuals	205 African American individuals	4q13.1	intergenic	rs9715521-?	NR	7E-6		0.668	[0.25-1.09] unit increase	Illumina [at least 13000000] (imputed)	N
1041	chr4	59826281	59826282	rs4860439	34124712	Sherva R	2021-02-28	Explor Med	Genome-wide association study of phenotypes measuring progression from first cocaine or opioid use to dependence reveals novel risk genes.	Opioid dependence (time to event)	1,307 African American cases, 974 African American controls	144 African American cases, 354 African American controls	4q13.1	RP11-506N2.1	rs4860439-T	0.31	1E-7		0.8	[NR]	Illumina [NR] (imputed)	N
1041	chr4	59844472	59844473	rs11931812	31005965	Coltell O	2019-04-21	Am J Clin Nutr	Association between taste perception and adiposity in overweight or obese older subjects with metabolic syndrome and identification of novel taste-related genes.	Sweet taste perception in obesity with metabolic syndrome	378 individuals	NA	4q13.1	LOC105377246	rs11931812-C	0.281	6E-6		0.423	[0.24-0.6] unit decrease	Illumina [622468]	N
1041	chr4	59867902	59867903	rs13103557	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Inflammatory skin disease	2,079 European ancestry atopic dermatitis cases, 4,212 European ancestry psoriasis cases, 11,899 European ancestry controls	NA	4q13.1	RP11-340A13.2	rs13103557-?	NR	5E-6	(Psoriasis)			Affymetrix, Illumina [~ 5200000]	N
1042	chr4	59906377	59906378	rs141020194	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Treatment or medication use - vitamin e product (UKB data field 20003_1140871112)	1,707 European ancestry cases, 454,569 European ancestry controls	NA	4q13.1		rs141020194-C	0.002785	8E-10		2.53	[1.72-3.34] unit increase	NR [11842647] (imputed)	N
1042	chr4	59978131	59978132	rs2088197	29678681	Matana A	2018-04-18	Genomics	Genome-wide meta-analysis identifies novel gender specific loci associated with thyroid antibodies level in Croatians.	Plasma anti-thyroid peroxidase levels	1,593 Croatian ancestry women, 1,025 Croatian ancestry men	NA	4q13.1	LOC105377247	rs2088197-G	NR	3E-6	(women)	0.171	[0.098-0.244] unit increase	Illumina [5527232] (imputed)	N
1042	chr4	59985877	59985878	rs79397085	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (lymphocyte)	21,347 Hispanic or Latin American individuals	NA	4q13.1		rs79397085-A	0.9939	4E-8		0.4166	[0.27-0.57] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1043	chr4	60064439	60064440	rs4467648	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fruit consumption	335,576 European ancestry individuals	NA	4q13.1	intergenic	rs4467648-?	NR	2E-10		0.0161215	[0.011-0.021] unit decrease	Affymetrix [25921788] (imputed)	N
1043	chr4	60134917	60134918	rs72631010	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	4q13.1	intergenic	rs72631010-T	NR	2E-6	(AA)			Illumina [up to 11995908] (imputed)	N
1044	chr4	60167457	60167458	rs200551879	33602968	Skuladottir AT	2021-02-18	Sci Rep	A meta-analysis uncovers the first sequence variant conferring risk of Bell's palsy.	Bell's palsy	4,714 European ancestry cases, 1,011,520 European ancestry controls	NA	4q13.1	intergenic	rs200551879-A	0.336	7E-6		0.90159	NR	Affymetrix, Illumina [30341632] (imputed)	N
1044	chr4	60228516	60228517	rs1119950	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	4q13.1	NA	rs1119950-A	0.5688	1E-9		0.0113	[0.0076-0.015] unit decrease	NR [~ 27400000] (imputed)	N
1044	chr4	60232683	60232684	rs1511394	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	4q13.1	NR	rs1511394-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
1044	chr4	60232687	60232688	rs1511395	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	4q13.1		rs1511395-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1044	chr4	60234291	60234292	rs72631056	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q13.1	NR	rs72631056-G	0.01045	9E-9	(SEPT11)	0.04183	NR unit decrease	Illumina [1671387] (imputed)	N
1044	chr4	60247507	60247508	rs72631060	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	4q13.1	intergenic	rs72631060-C	0.969824	4E-9		0.035009	[0.023-0.047] unit decrease	NR [16516521] (imputed)	N
1045	chr4	60311345	60311346	rs1397808	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	4q13.1		rs1397808-A	0.354	3E-15		0.01	[0.008-0.012] unit increase	NR [NR] (imputed)	N
1045	chr4	60318259	60318260	rs143443524	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Sensorimotor dexterity	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	4q13.1	intergenic	rs143443524-A	NR	4E-6		0.45845932	[0.25-0.67] unit decrease	Illumina [> 6200000] (imputed)	N
1045	chr4	60322941	60322942	rs7687653	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	4q13.1	NR	rs7687653-C	0.638	2E-9		0.00681019	[0.0046-0.009] unit decrease	NR [9732723] (imputed)	N
1045	chr4	60338267	60338268	rs190057637	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q13.1	Intergenic	rs190057637-T	0.999	4E-6	(AA)	0.426	unit increase	Illumina [NR] (imputed)	N
1046	chr4	60445817	60445818	rs6551924	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	4q13.1		rs6551924-C	0.811	3E-12		0.01	[0.008-0.012] unit decrease	NR [NR] (imputed)	N
1046	chr4	60452038	60452039	rs143616372	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	4q13.1	intergenic	rs143616372-A	0.0890040183574416	3E-6	(C_Deltaproteobacteria_HB)	0.525779	[0.3-0.75] unit decrease	Illumina [7711310] (imputed)	N
1046	chr4	60498472	60498473	rs2086656	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-10 levels	7,681 Finnish ancestry individuals	NA	4q13.1	NR	rs2086656-C		4E-6		0.0789	[0.045-0.112] SD units increase	NR [10700000] (imputed)	N
1046	chr4	60515627	60515628	rs62305808	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Fibroblast growth factor basic levels	7,565 Finnish ancestry individuals	NA	4q13.1	NR	rs62305808-C		8E-6		0.092	[0.051-0.133] SD units increase	NR [10700000] (imputed)	N
1048	chr4	60714216	60714217	rs145895560	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	4q13.1	NR	rs145895560-?	NR	8E-6		0.0083175	[0.0047-0.012] unit decrease	Affymetrix [805426] (imputed)	N
1048	chr4	60748828	60748829	rs10517480	19043545	Gieger C	2008-11-28	PLoS Genet	Genetics meets metabolomics: a genome-wide association study of metabolite profiles in human serum.	Metabolite levels	284 European ancestry male individuals	NA	4q13.1	intergenic	rs10517480-?	0.31	2E-7	(PC)			Affymetrix [187454]	N
1048	chr4	60755291	60755292	rs368795690	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	4q13.1		rs368795690-T	0.998936	1E-8		0.348508	[0.23-0.47] unit decrease	NR [11722792] (imputed)	N
1048	chr4	60755291	60755292	rs368795690	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	4q13.1		rs368795690-T	0.998936	1E-8		0.352954	[0.23-0.47] unit decrease	NR [11722792] (imputed)	N
1048	chr4	60755291	60755292	rs368795690	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	4q13.1		rs368795690-T	0.998936	2E-8		0.345067	[0.22-0.47] unit increase	NR [11722792] (imputed)	N
1048	chr4	60815479	60815480	rs28823272	30621171	Coltell O	2019-01-04	Nutrients	Genome-Wide Association Study (GWAS) on Bilirubin Concentrations in Subjects with Metabolic Syndrome: Sex-Specific GWAS Analysis and Gene-Diet Interactions in a Mediterranean Population.	Serum bilirubin levels x sex interaction in metabolic syndrome	188 European ancestry male individuals, 242 European ancestry female individuals	NA	4q13.1	intergenic	rs28823272-?	NR	3E-6				Illumina [622468]	N
1049	chr4	60865588	60865588	rs35630707	33239696	Steinthorsdottir V	2020-11-25	Nat Commun	Genetic predisposition to hypertension is associated with preeclampsia in European and Central Asian women.	Preeclampsia (maternal genotype effect)	2,296 Central Asian ancestry cases, 2,059 Central Asian ancestry controls, 7,219 European ancestry cases, 155,660 European ancestry controls	592 Kazakh ancestry cases, 361 Kazakh ancestry controls, 2,043 European ancestry cases, 6,018 European ancestry controls	4q13.1		rs35630707-C	0.02	7E-6		1.47	[1.23-1.72]	Illumina [11796347] (imputed)	N
1049	chr4	60941323	60941324	rs2165472	31085060	Gisbert L	2019-05-10	Eur Neuropsychopharmacol	Genome-wide analysis of emotional lability in adult attention deficit hyperactivity disorder (ADHD).	Emotional lability in attention deficit hyperactivity disorder	563 European ancestry individuals	NA	4q13.1	LPHN3	rs2165472-C	NR	4E-6		3.71	[2.13-6.48]	Illumina [2777520] (imputed)	N
1050	chr4	61029975	61029976	rs144257849	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	4q13.1	NR	rs144257849-?	NR	9E-6		0.0075416	[0.0042-0.0109] unit decrease	Affymetrix [805426] (imputed)	N
1051	chr4	61113558	61113559	rs149896579	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q13.1	NR	rs149896579-A	0.0122	8E-11	(MARC2)	0.2047	NR unit increase	Illumina [1671387] (imputed)	N
1051	chr4	61183978	61183979	rs6820377	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Lateral ventricle temporal horn volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	4q13.1	NR	rs6820377-?		7E-6				Illumina [4322238] (imputed)	N
1052	chr4	61273210	61273211	rs375676384	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q13.1	NR	rs375676384-A	0.01045	2E-8	(NME8)	0.06559	NR unit increase	Illumina [1671387] (imputed)	N
1053	chr4	61345971	61345972	rs10517505	31189108	O'Connor D	2019-06-01	Cell Rep	Common Genetic Variations Associated with the Persistence of Immunity following Childhood Immunization.	Meningococcal C functional antibody titers post childhood immunization	1,585 European ancestry children and adolescents	779 European ancestry children and adolescents	4q13.1	intergenic	rs10517505-T	NR	3E-6		0.2949	[0.17-0.42] unit decrease	Illumina [~ 6700000] (imputed)	N
1053	chr4	61349131	61349132	rs55710816	29520036	Stein MB	2018-03-08	Mol Psychiatry	Genome-wide analysis of insomnia disorder.	Insomnia	2,297 European American cases, 334 African American cases, 606 Latino American cases, 9,176 European American controls, 2,345 African American controls, 2,893 Latino American controls	NA	4q13.1	intergenic	rs55710816-G	NR	9E-7	(EA)	1.4285715		Illumina [at least 360704] (imputed)	N
1053	chr4	61380274	61380275	rs576009941	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	4q13.1	NR	rs576009941-C	0.01	4E-6		1.0204082	[-0.99839-3.03921]	Affymetrix [at least 143006] (imputed)	N
1053	chr4	61449600	61449601	rs149821426	32589924	Bi W	2020-06-23	Am J Hum Genet	A Fast and Accurate Method for Genome-Wide Time-to-Event Data Analysis and Its Application to UK Biobank.	Cataract (time to event)	22,635 British ancestry cases, 260,236 British ancestry controls	NA	4q13.1	LINC02429, MIR548AG1	rs149821426-?	NR	5E-8				NR [~ 24000000] (imputed)	N
1053	chr4	61454904	61454905	rs191252760	33510174	Jones G	2021-01-28	Nat Commun	Genome-wide meta-analysis of muscle weakness identifies 15 susceptibility loci in older men and women.	Low hand grip strength (60 years and older) (FNIH)	20,335 European ancestry cases, 236,188 European ancestry controls	NA	4q13.1	AC095061.1	rs191252760-G	0.02	3E-8		0.1863	unit increase	Affymetrix, Illumina [9465622] (imputed)	N
1054	chr4	61562089	61562090	rs7672005	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	4q13.1	NR	rs7672005-?	NR	7E-6		0.108	[0.061-0.155] unit decrease	Illumina [at least 560000] (imputed)	N
1054	chr4	61603155	61603156	rs13132569	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Daytime sleep phenotypes	874 European ancestry individuals	NA	4q13.1	MIR548AG1	rs13132569-C	NR	7E-7	(daytime napping, weekdays)	0.6402	[0.39-0.89] unit increase	Affymetrix [7141204] (imputed)	N
1055	chr4	61666245	61666246	rs150759334	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	4q13.1	NONE, LPHN3	rs150759334-T	0.01	9E-7	(EA)	0.3513	[0.21-0.49] unit decrease	Illumina [~ 9000000] (imputed)	N
1055	chr4	61666245	61666246	rs150759334	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	4q13.1	LPHN3	rs150759334-T	0.01	1E-6		0.3483	[0.21-0.49] unit decrease	Illumina [~ 9000000] (imputed)	N
1056	chr4	61743346	61743347	rs62313278	28247064	Deming Y	2017-02-28	Acta Neuropathol	Genome-wide association study identifies four novel loci associated with Alzheimer's endophenotypes and disease modifiers.	Cerebrospinal fluid AB1-42 levels	3,146 individuals	NA	4q13.1	MIR548AG1	rs62313278-G	0.08	4E-6		0.034	[0.02-0.048] unit increase	Illumina [7358575] (imputed)	N
1056	chr4	61765528	61765529	rs1378363	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	4q13.1	Intergenic	rs1378363-T	0.3211	6E-12	(MTAG)	0.0121	[0.0086-0.0156] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1056	chr4	61765839	61765840	rs7693605	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	4q13.1	Intergenic	rs7693605-G	0.6789	3E-8		0.0135	[0.0088-0.0182] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1056	chr4	61805584	61805585	rs2631043	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	4q13.1	Intergenic	rs2631043-A	0.3349	2E-17	(MTAG)	0.0162	[0.012-0.02] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1056	chr4	61821440	61821441	rs1386119	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	4q13.1	Intergenic	rs1386119-G	0.3341	2E-17		0.0176	[0.013-0.022] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1056	chr4	61837132	61837133	rs1906073	28039263	Wheeler HE	2016-12-30	Clin Cancer Res	Variants in WFS1 and Other Mendelian Deafness Genes Are Associated with Cisplatin-Associated Ototoxicity.	Cisplatin-induced ototoxicity	511 European ancestry testicular cancer survivor individuals	238 children	4q13.1	intergenic	rs1906073-A	NR	9E-6		4.438	z score increase	Illumina [5060354] (imputed)	N
1056	chr4	61853404	61853405	rs13148643	28039263	Wheeler HE	2016-12-30	Clin Cancer Res	Variants in WFS1 and Other Mendelian Deafness Genes Are Associated with Cisplatin-Associated Ototoxicity.	Cisplatin-induced ototoxicity	511 European ancestry testicular cancer survivor individuals	238 children	4q13.1	intergenic	rs13148643-T	NR	5E-6		4.554	z score increase	Illumina [5060354] (imputed)	N
1057	chr4	61929485	61929486	rs28559758	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	4q13.1	NR	rs28559758-A	0.599	4E-8		0.00620002	[0.004-0.0084] unit increase	NR [9732723] (imputed)	N
1057	chr4	61966272	61966273	rs4599440	19260141	Zemunik T	2009-02-01	Croat Med J	Genome-wide association study of biochemical traits in Korcula Island, Croatia.	Biochemical measures	898 Korculan (founder/genetic isolate) individuals	NA	4q13.1	LPHN3	rs4599440-A	0.23	2E-6	(HDL cholesterol)	0.2	[0.12-0.28] mmol/L increase	Illumina [316730]	N
1058	chr4	61997416	61997417	rs1900959	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	4q13.1	SRD5A2L2	rs1900959-?	NR	7E-6	(3-hydroxyphenylacetic acid)	0.19639952	[0.11-0.28] unit increase	Affymetrix [at least 2500000] (imputed)	N
1058	chr4	62127290	62127291	rs1505676	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	4q13.1		rs1505676-C	0.6293	7E-9		0.0084	[0.0055-0.0113] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1058	chr4	62127537	62127538	rs1505677	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	4q13.1	Intergenic	rs1505677-T	0.6291	2E-8	(MTAG)	0.0076	[0.0049-0.0103] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1059	chr4	62179295	62179296	rs188564008	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	4q13.1	LPHN3	rs188564008-A	0.002	4E-6		0.219	NR unit decrease	Illumina [NR] (imputed)	N
1059	chr4	62181773	62181774	rs139070430	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	4q13.1	LPHN3	rs139070430-A	0.998	5E-6		0.219	NR unit increase	Illumina [NR] (imputed)	N
1059	chr4	62182552	62182553	rs1021926	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	4q13.1	SRD5A2L2	rs1021926-?	NR	3E-6	(CE 20:4)	0.1824571	[0.11-0.26] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1059	chr4	62182552	62182553	rs1021926	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	4q13.1	SRD5A2L2	rs1021926-?	NR	2E-6	(CE 16:0)	0.18265715	[0.11-0.26] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1059	chr4	62188075	62188076	rs147407934	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Measles	38,219 European ancestry cases, 47,279 European ancestry controls	NA	4q13.1	NR	rs147407934-?	NR	3E-6		0.3404	[0.2-0.48] unit decrease	Illumina [at least 560000] (imputed)	N
1061	chr4	62409800	62409801	rs28540500	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	4q13.1	LPHN3	rs28540500-C	0.38	2E-10		0.42	[0.28-0.56] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1061	chr4	62409800	62409801	rs28540500	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	4q13.1	LPHN3	rs28540500-C	0.3797	3E-9		0.4081	[0.27-0.54] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1061	chr4	62421203	62421204	rs4860418	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	4q13.1	Intergenic	rs4860418-T	0.4857	5E-8	(MTAG)	0.0071	[0.0046-0.0096] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1061	chr4	62427055	62427056	rs573890687	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	4q13.1		rs573890687-C	NR	4E-9		2.4227	[1.62-3.23] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1061	chr4	62427055	62427056	rs573890687	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	4q13.1		rs573890687-C	7.0E-6	4E-9		2.42273	[1.62-3.23] unit decrease	Illumina [13479295] (imputed)	N
1061	chr4	62437317	62437318	rs6856328	21107309	McClay JL	2010-11-24	Neuropsychopharmacology	Genome-wide pharmacogenomic study of neurocognition as an indicator of antipsychotic treatment response in schizophrenia.	Response to antipsychotic treatment in schizophrenia (working memory)	738 European ancestry, African American, and other ancestry cases	NA	4q13.1	LPHN3	rs6856328-?	0.07	8E-7	(quetiapine)			Affymetrix [492900]	N
1061	chr4	62453208	62453209	rs2172802	20522523	Kasperaviciute D	2010-06-03	Brain	Common genetic variation and susceptibility to partial epilepsies: a genome-wide association study.	Partial epilepsies	Up to 3,445 European ancestry cases, 6,935 European ancestry controls	NA	4q13.1	LPHN3	rs2172802-?	NR	3E-6				Illumina [528745]	N
1061	chr4	62500021	62500022	rs4276313	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	4q13.1	NR	rs4276313-?	NR	6E-6		1998.2511	NR unit decrease	Illumina [2379855]	N
1063	chr4	62754319	62754320	rs6858066	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	4q13.1	ADGRL3	rs6858066-A	0.4835	1E-9		0.011758989	[0.008-0.0156] unit increase	Illumina [9339358] (imputed)	N
1063	chr4	62775332	62775333	rs192210727	30402224	Yamada Y	2018-09-17	Biomed Rep	Identification of 26 novel loci that confer susceptibility to early-onset coronary artery disease in a Japanese population.	Coronary artery disease	1,482 Japanese ancestry cases, 5,774 Japanese ancestry controls	NA	4q13.1	ADGRL3	rs192210727-G	0.987	3E-23		10.0		Illumina [up to 244000]	N
1063	chr4	62775332	62775333	rs192210727	30226566	Yamada Y	2018-09-04	Int J Mol Med	Identification of 13 novel susceptibility loci for early-onset myocardial infarction, hypertension, or chronic kidney disease.	Myocardial infarction	1,152 Japanese ancestry cases, 5,774 Japanese ancestry controls	NA	4q13.1	ADGRL3	rs192210727-G		1E-20		14.285714		Illumina [31245]	N
1063	chr4	62775332	62775333	rs192210727	30226566	Yamada Y	2018-09-04	Int J Mol Med	Identification of 13 novel susceptibility loci for early-onset myocardial infarction, hypertension, or chronic kidney disease.	Chronic kidney disease	1,051 Japanese ancestry cases, 1,505 Japanese ancestry controls	NA	4q13.1	ADGRL3	rs192210727-G	0.987	2E-7		4.0		Illumina [31514]	N
1063	chr4	62775332	62775333	rs192210727	29930801	Yamada Y	2018-05-29	Biomed Rep	Identification of nine genes as novel susceptibility loci for early-onset ischemic stroke, intracerebral hemorrhage, or subarachnoid hemorrhage.	Ischemic stroke	450 Japanese ancestry cases, 5,774 Japanese ancestry controls	NA	4q13.1	ADGRL3	rs192210727-G	0.088	6E-9		14.285714		Illumina [31245]	N
1064	chr4	62844407	62844408	rs10030755	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	4q13.1	LPHN3	rs10030755-?		2E-10				Affymetrix, Illumina [NR] (imputed)	N
1064	chr4	62862614	62862615	rs6824673	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Longevity	up to 482,000 European ancestry individuals	NA	4q13.1	NR	rs6824673-G	NR	5E-6		0.01706	[0.0097-0.0244] unit increase	Illumina [~ 540852]	N
1064	chr4	62873418	62873419	rs28634184	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	4q13.1		rs28634184-T	0.251	2E-8		0.014	[0.01-0.018] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
1064	chr4	62873418	62873419	rs28634184	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	4q13.1		rs28634184-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1064	chr4	62882063	62882064	rs187977998	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Epilepsy	4,382 European ancestry cases, 453,928 European ancestry controls, 2,466 East Asian ancestry cases, 175,788 East Asian ancestry controls	NA	4q13.1		rs187977998-T	NR	2E-8		0.7708	[0.5-1.04] unit increase	Affymetrix, Illumina [25841675] (imputed)	N
1064	chr4	62896143	62896144	rs62306379	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	4q13.1		rs62306379-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1065	chr4	62914953	62914954	rs9998041	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	4q13.1	Intergenic	rs9998041-T	0.2458	2E-8	(MTAG)	0.0086	[0.0057-0.0115] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1065	chr4	62914953	62914954	rs9998041	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	4q13.1	NR	rs9998041-?	NR	9E-6		4.452	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1065	chr4	62942910	62942911	rs10026213	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	4q13.1		rs10026213-A	0.579	3E-9		0.007	[0.005-0.009] unit increase	NR [NR] (imputed)	N
1065	chr4	62972596	62972597	rs7671317	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	4q13.1	ADGRL3, AS1	rs7671317-G	0.318494	4E-8		0.0122333	[0.0079-0.0166] unit decrease	NR [16516521] (imputed)	N
1067	chr4	63227980	63227981	rs4599441	34586716	Chen J	2021-09-29	Mol Genet Genomic Med	Heritability and genome-wide association study of blood pressure in Chinese adult twins.	Diastolic blood pressure	137 Chinese ancestry twins	NA	4q13.1		rs4599441-?	NR	3E-6				Illumina [7401356] (imputed)	N
1067	chr4	63242293	63242294	rs113282307	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	4q13.1	NR	rs113282307-?	NR	5E-6		0.238648	[0.14-0.34] unit decrease	NR [13958389] (imputed)	N
1068	chr4	63342269	63342270	rs6819266	23326517	Holliday EG	2013-01-11	PLoS One	Insights into the genetic architecture of early stage age-related macular degeneration: a genome-wide association study meta-analysis.	Age-related macular degeneration	3,772 European ancestry cases, 16,033 European ancestry controls	264 Asian ancestry cases, 3,926 Asian ancestry controls	4q13.1	intergenic	rs6819266-?	0.62	8E-6		1.15	[1.09-1.22]	Affymetrix, Illumina [~ 2500000] (imputed)	N
1068	chr4	63424088	63424089	rs11944965	23648065	Low SK	2013-05-04	Cancer Sci	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (cisplatin)	176 Japanese ancestry cases, 471 Japanese ancestry controls	NA	4q13.1	LOC644534	rs11944965-T	0.678	2E-6	(Dominant model)	1.986	[1.475-2.676]	Illumina [733202]	N
1069	chr4	63538462	63538463	rs145186303	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	4q13.1	LOC644534	rs145186303-T	0.9234	2E-8	(C2)	0.1675	[0.11-0.22] unit decrease	Illumina [~ 47000000] (imputed)	N
1070	chr4	63575695	63575696	rs6551716	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	NA	4q13.1	LPHN3	rs6551716-T	0.14400000000000002	4E-9		0.1478	[0.099-0.197] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1072	chr4	63832156	63832157	rs77580059	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	CAG-488 abundance in stool	5,959 Finnish ancestry individuals	NA	4q13.1		rs77580059-T	0.0137861	2E-8		0.208872	[0.14-0.28] unit increase	Illumina [7980478] (imputed)	N
1072	chr4	63893277	63893278	rs145379083	23568457	Wade TD	2013-04-09	Int J Eat Disord	Genetic variants associated with disordered eating.	Bulimia nervosa	151 European ancestry female cases, 2,291 European ancestry female controls	NA	4q13.1	intergenic	rs145379083-G	0.51	3E-6		0.037	[0.021-0.053] unit decrease	Illumina [6150213] (imputed)	N
1072	chr4	63946011	63946012	rs6857728	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	4q13.1		rs6857728-?	NR	3E-12				NR [~ 8900000] (imputed)	N
1073	chr4	64014715	64014716	rs1826059	34834585	Zazuli Z	2021-11-20	J Pers Med	Association between Genetic Variants and Cisplatin-Induced Nephrotoxicity: A Genome-Wide Approach and Validation Study.	Cisplatin-induced nephrotoxicity (decreased eGFR)	608 European ancestry individuals	NA	4q13.1		rs1826059-A	NR	1E-7		7.3	[4.6-10] increase	Illumina [6500000] (imputed)	N
1074	chr4	64115813	64115814	rs145510525	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota alpha diversity (Simpson index)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	4q13.1		rs145510525-T	NR	4E-6		4.604041	z score decrease	Affymetrix, Illumina [NR] (imputed)	N
1075	chr4	64255478	64255479	rs10434233	34304350	Lim WY	2021-07-25	Genes Genomics	Identification of genetic variants for blood insulin level in sex-stratified Korean population and evaluation of the causal relationship between blood insulin level and polycystic ovary syndrome.	Insulin levels	4,182 Korean ancestry male	NA	4q13.1		rs10434233-G	0.02	7E-6		1.63	unit increase	Affymetrix [NR] (imputed)	N
1075	chr4	64313982	64313983	rs1913633	25461247	Lehmann DS	2015-02-01	Pharmacogenet Genomics	Genome-wide association study of virologic response with efavirenz-containing or abacavir-containing regimens in AIDS clinical trials group protocols.	Response to abacavir-containing treatment in HIV-1 infection (virologic failure)	Up 346 European ancestry individuals, Up to 265 Black individuals, Up to 175 Hispanic individuals	NA	4q13.1	NR	rs1913633-A	NR	4E-6	(phenotype 2)	3.84	[NR]	Illumina [> 8000000] (imputed)	N
1075	chr4	64322071	64322072	rs17628760	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Lateral ventricle temporal horn volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	4q13.1	NR	rs17628760-?		5E-6				Illumina [4322238] (imputed)	N
1075	chr4	64347277	64347278	rs34414412	31504550	Bradfield JP	2019-07-05	Hum Mol Genet	A Trans-ancestral Meta-Analysis of Genome-Wide Association Studies Reveals Loci Associated with Childhood Obesity.	Childhood obesity	8,613 European ancestry cases, 3,213 African American cases, 69 Moroccan ancestry cases, 986 Hispanic/Latino cases, 124 East Asian ancestry cases, 12,696 European ancestry controls, 1,392 African American controls, 64 Moroccan ancestry controls, 993 Hispanic/Latino controls, 454 East Asian ancestry controls	NA	4q13.1	NR	rs34414412-A	NR	8E-6	(EA)	0.2212	[0.12-0.32] unit increase	Affymetrix, Illumina [up to 15123508] (imputed)	N
1076	chr4	64360712	64360713	rs11131465	29346644	Yan Q	2018-01-15	Hum Mol Genet	Genome-wide Analysis of Disease Progression in Age-related Macular Degeneration.	Disease progression in age-related macular degeneration (adjusted for baseline)	1,105 progressed eyes and 3,912 non-progressed eyes from 2,721 European ancestry individuals	NA	4q13.1	TECRL, LPHN3-AS1	rs11131465-C	0.11	9E-6		1.4		Illumina [8974355] (imputed)	N
1076	chr4	64368964	64368965	rs73213010	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	4q13.1	NR	rs73213010-?	NR	8E-10	(CXCL10)	1.51215	[1.03-1.99] unit increase	Illumina [11901634] (imputed)	N
1078	chr4	64705729	64705730	rs142535310	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in dyslipidemia	295 Korean ancestry cases, 20,474 Korean ancestry controls	NA	4q13.1		rs142535310-C	0.01136	2E-6		3.22	[1.986-5.21899999999999]	Affymetrix [7975321] (imputed)	N
1080	chr4	64903605	64903606	rs28447044	26121980	Chauhan L	2015-06-30	BMC Genomics	Genome-wide association analysis identified splicing single nucleotide polymorphism in CFLAR predictive of triptolide chemo-sensitivity.	Triptolide cytotoxicity	55 European ancestry lymphoblastoid cell lines	NA	4q13.1	TECRL	rs28447044-?	NR	5E-6		0.57	unit increase	Affymetrix, Illumina, Perlegen [at least 1978803] (imputed)	N
1080	chr4	64955595	64955596	rs2139630	34748635	Miranda JP	2021-11-08	J Clin Endocrinol Metab	Genome-Wide Association Study And Polygenic Risk Scores Of Serum Dheas Levels In A Chilean Children Cohort.	DHEAS levels	390 Hispanic or Latin American female individuals	NA	4q13.1	TECRL	rs2139630-T	0.131	6E-6		0.12	unit decrease	Illumina [5510858] (imputed)	N
1080	chr4	65008381	65008382	rs4860568	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Thalamus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	4q13.1	NR	rs4860568-?		4E-6				Illumina [4322238] (imputed)	N
1081	chr4	65067403	65067404	rs75518195	26121980	Chauhan L	2015-06-30	BMC Genomics	Genome-wide association analysis identified splicing single nucleotide polymorphism in CFLAR predictive of triptolide chemo-sensitivity.	Triptolide cytotoxicity	55 European ancestry lymphoblastoid cell lines	NA	4q13.1	TECRL	rs75518195-?	NR	3E-6		0.58	unit increase	Affymetrix, Illumina, Perlegen [at least 1978803] (imputed)	N
1082	chr4	65163812	65163813	rs140533403	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	AR31 abundance in stool	5,959 Finnish ancestry individuals	NA	4q13.1		rs140533403-A	0.0166359	4E-8		0.108187	[0.07-0.147] unit decrease	Illumina [7980478] (imputed)	N
1082	chr4	65170414	65170415	rs7656244	22446961	Lee YC	2012-03-25	Nat Genet	Two new susceptibility loci for Kawasaki disease identified through genome-wide association analysis.	Kawasaki disease	622 Han Chinese ancestry cases, 1,107 Han Chinese ancestry controls	261 Han Chinese ancestry cases, 550 Han Chinese ancestry controls	4q13.1	SRD5A2L2	rs7656244-A	0.270	3E-7		1.394	[1.225-1.587]	Affymetrix [716935]	N
1082	chr4	65222241	65222242	rs7698280	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	4q13.1	NR	rs7698280-?	NR	5E-6	(AA)	0.3344	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1082	chr4	65226510	65226511	rs4860155	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	4q13.1	TECRL	rs4860155-T	NR	4E-6		0.0334577	[0.019-0.048] unit increase	Illumina [13520550] (imputed)	N
1082	chr4	65235715	65235716	rs114987984	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	4q13.1	TECRL	rs114987984-T	0.00870096846770751	3E-6	(G_Gemmiger_HB)	1.54519	[0.9-2.2] unit decrease	Illumina [7711310] (imputed)	N
1082	chr4	65242008	65242009	rs12500772	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota (alpha diversity)	858 Metropolitan French ancestry individuals	NA	4q13.1	NR	rs12500772-?	NR	7E-6	(Simpson's diversity index)	606949.0	[344287.44-869610.56] unit decrease	Illumina [5293637] (imputed)	N
1082	chr4	65273839	65273840	rs6836944	24144296	Cheng CY	2013-08-08	Am J Hum Genet	Nine loci for ocular axial length identified through genome-wide association studies, including shared loci with refractive error.	Axial length	12,531 European ancestry individuals	8,216 Asian ancestry individuals	4q13.1	SRD5A2L2	rs6836944-T	0.0072	3E-6		0.8601	[0.5-1.22] unit increase	Illumina [2500000] (imputed)	N
1083	chr4	65392211	65392212	rs1425392	23726511	Xie P	2013-05-28	Biol Psychiatry	Genome-wide association study identifies new susceptibility loci for posttraumatic stress disorder.	Post-traumatic stress disorder (asjusted for relatedness)	up to 308 European ancestry cases, up to 1,538 European ancestry controls, up to 456 African American cases, up to 2,936 African American controls	NA	4q13.1	TECRL	rs1425392-?	NR	7E-6	(Trauma exposed controls; EA)			Illumina [up to 871502]	N
1084	chr4	65473339	65473340	rs78825642	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder	29,475 European ancestry cases, 63,482 European ancestry controls	NA	4q13.1	NR	rs78825642-C	0.8699	4E-6		1.0718113	[1.04-1.1]	Affymetrix [7791636] (imputed)	N
1084	chr4	65515036	65515037	rs1425386	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Smoking x traumatic event in childhood (felt hated by family member) interaction	124,481 European ancestry individuals	NA	4q13.1		rs1425386-?	NR	2E-8		0.5431	[0.35-0.73] unit increase	Affymetrix [NR] (imputed)	N
1085	chr4	65587958	65587959	rs62315163	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels	774 Chinese ancestry individuals	NA	4q13.1		rs62315163-?	NR	9E-6		0.93	[0.52-1.34] unit increase	Affymetrix [NR] (imputed)	N
1085	chr4	65588621	65588622	rs11131571	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	4q13.1		rs11131571-C	0.5	3E-10		6.29	z score increase	Affymetrix [9061022] (imputed)	N
1085	chr4	65651231	65651232	rs9917946	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	4q13.1	NR	rs9917946-?	NR	3E-10				Affymetrix [~ 8270000] (imputed)	N
1085	chr4	65651231	65651232	rs9917946	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	4q13.1		rs9917946-?	NR	3E-10				NR [~ 8900000] (imputed)	N
1085	chr4	65651729	65651730	rs1346841	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	4q13.1	NA	rs1346841-A	0.4116	3E-13		0.0126	[0.0093-0.0159] unit decrease	NR [~ 27400000] (imputed)	N
1086	chr4	65696173	65696174	rs28462076	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	4q13.1		rs28462076-G	NR	2E-8		0.0104	[0.0069-0.0139] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1086	chr4	65696173	65696174	rs28462076	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		4q13.1	TECRL	rs28462076-A	0.761729	7E-9		0.00939268	[0.0062-0.0126] unit increase	Affymetrix [12370749]	N
1086	chr4	65734545	65734546	rs191961597	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 5 levels	252 European ancestry individuals	NA	4q13.1		rs191961597-T	NR	8E-6		0.34927	[0.2-0.5] unit increase	Illumina [NR] (imputed)	N
1086	chr4	65740008	65740009	rs12508307	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	4q13.1		rs12508307-T	NR	2E-10		0.0129	[0.009-0.0168] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1086	chr4	65785447	65785448	rs67482514	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	4q13.1	NR	rs67482514-C	NR	3E-8		5.53	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1086	chr4	65798134	65798135	rs2119438	30898391	Lawrenson K	2019-03-19	Gynecol Oncol	Genome-wide association studies identify susceptibility loci for epithelial ovarian cancer in east Asian women.	Epithelial ovarian cancer	3,238 East Asian ancestry cases, 4,083 East Asian ancestry controls	NA	4q13.1		rs2119438-?	NR	6E-6	(ser_lg_lmp)	1.77		Illumina [11595112] (imputed)	N
1087	chr4	65818406	65818407	rs41464545	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	4q13.1	LOC401134	rs41464545-G	NR	4E-6	(East Asian)	1.125	[1.07-1.18]	Illumina [6627481] (imputed)	N
1087	chr4	65818406	65818407	rs41464545	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	4q13.1	intergenic	rs41464545-A	NR	1E-6	(Chinese)	1.15	[1.09-1.21]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1087	chr4	65823212	65823213	rs1561643	34518958	Sanders AR	2021-09-13	Arch Sex Behav	Genome-Wide Linkage and Association Study of Childhood Gender Nonconformity in Males.	Childhood gender nonconformity	409 European ancestry concordant male sibling pairs	NA	4q13.1		rs1561643-T	0.795	2E-6		0.079	[0.048-0.11] unit decrease	Affymetrix [6030650] (imputed)	N
1087	chr4	65831183	65831184	rs3943667	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	4q13.1	NR	rs3943667-C	0.296223	4E-9		0.040340427	[0.027-0.054] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1087	chr4	65831183	65831184	rs3943667	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	4q13.1	Intergenic	rs3943667-T	0.7082	8E-12	(MTAG)	0.0172	[0.012-0.022] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1087	chr4	65831183	65831184	rs3943667	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	4q13.1	Intergenic	rs3943667-T	0.7082	4E-9		0.0185	[0.012-0.025] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
1087	chr4	65845554	65845555	rs78723082	31560688	Geidenstam N	2019-09-27	PLoS One	Using metabolite profiling to construct and validate a metabolite risk score for predicting future weight gain.	Malate levels	1,937 individuals	NA	4q13.1	RP11-707A18.1	rs78723082-C	0.968	3E-7		0.4933	[0.3-0.68] unit increase	Affymetrix, Illumina [up to 22000000] (imputed)	N
1087	chr4	65852249	65852250	rs145535796	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	4q13.1	NR	rs145535796-?	NR	1E-9	(CXCL10)	1.83162	[1.24-2.42] unit increase	Illumina [11901634] (imputed)	N
1087	chr4	65893591	65893592	rs57179003	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	4q13.1	Intergenic	rs57179003-A	0.7181	2E-9	(MTAG)	0.012	[0.0081-0.0159] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1087	chr4	65895650	65895651	rs2196983	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	4q13.1	Intergenic	rs2196983-A	0.7171	7E-11	(MTAG)	0.0119	[0.0084-0.0154] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1087	chr4	65897971	65897972	rs12507733	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	4q13.1	Intergenic	rs12507733-T	0.3999	1E-10	(MTAG)	0.0086	[0.0061-0.0111] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1087	chr4	65900198	65900199	rs988100	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	4q13.1		rs988100-T	0.4496	3E-10	(conditional-joint)	0.009	[0.0063-0.0117] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1087	chr4	65902341	65902342	rs1440930	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	4q13.1		rs1440930-C	0.4535	9E-9		0.0081	[0.0054-0.0108] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1087	chr4	65928496	65928497	rs4482818	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-18 levels	3,636 Finnish ancestry individuals	NA	4q13.1	NR	rs4482818-G		1E-7		0.1286	[0.081-0.176] SD units decrease	NR [10700000] (imputed)	N
1088	chr4	65979198	65979199	rs329461	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	4q13.1	SRD5A2L2	rs329461-?	NR	6E-6	(hydroxyproline)	0.22904816	[0.13-0.33] unit increase	Affymetrix [at least 2500000] (imputed)	N
1088	chr4	65993715	65993718	rs575548842	33602968	Skuladottir AT	2021-02-18	Sci Rep	A meta-analysis uncovers the first sequence variant conferring risk of Bell's palsy.	Bell's palsy	4,714 European ancestry cases, 1,011,520 European ancestry controls	NA	4q13.1	intergenic	rs575548842-A	0.0043	8E-6		1.9603	NR	Affymetrix, Illumina [30341632] (imputed)	N
1089	chr4	66079432	66079433	rs140509440	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	4q13.1	Intergenic	rs140509440-A	0.0115	3E-8	(MTAG)	0.0433	[0.028-0.059] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1089	chr4	66083946	66083947	rs2349420	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-18 levels	3,636 Finnish ancestry individuals	NA	4q13.1	NR	rs2349420-G		5E-6		0.1124	[0.064-0.16] SD units decrease	NR [10700000] (imputed)	N
1089	chr4	66142595	66142596	rs7692514	26980576	Kim K	2016-03-15	J Rheumatol	Response to Intravenous Cyclophosphamide Treatment for Lupus Nephritis Associated with Polymorphisms in the FCGR2B-FCRLA Locus.	Response to cyclophosphamide in systemic lupus erythematosus with lupus nephritis	93 Korean ancestry responder cases, 16 Korean ancestry non-responder cases	NA	4q13.1	LOC401134, EPHA5	rs7692514-?	NR	9E-7				Illumina [491617]	N
1090	chr4	66220696	66220697	rs7692430	30557370	Baas J	2018-12-17	PLoS One	Genome wide association study to identify predictors for severe skin toxicity in colorectal cancer patients treated with cetuximab.	Severe skin toxicity response to cetuximab in colorectal cancer	36 cases, 246 controls with no or mild skin toxicity	NA	4q13.1	EPHA5	rs7692430-?	NR	4E-7		4.57	[2.46-8.49]	Illumina [5830976] (imputed)	N
1090	chr4	66242548	66242549	rs10012882	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	4q13.1		rs10012882-T	0.97761	2E-6		32.01643	z score increase	NR [6814003]	N
1090	chr4	66244542	66244543	rs10019169	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	4q13.1	Intergenic	rs10019169-A	0.0237	1E-8	(MTAG)	0.0246	[0.016-0.033] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1091	chr4	66359576	66359577	rs4337775	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	4q13.1		rs4337775-?	NR	2E-6		0.0097364	[0.0057-0.0137] unit increase	NR [6912294] (imputed)	N
1091	chr4	66422736	66422737	rs62300402	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	4q13.2	NR	rs62300402-?	NR	4E-6		4.59	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1091	chr4	66430624	66430625	rs13145146	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	4q13.2	EPHA5	rs13145146-?	NR	2E-9		0.028579967	[0.019-0.038] unit decrease	NR [7306098]	N
1091	chr4	66446348	66446349	rs28455852	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	4q13.2	EPHA5	rs28455852-A	0.08	2E-10		0.0139	[0.0096-0.0182] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
1091	chr4	66452603	66452604	rs4458506	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	4q13.2		rs4458506-A	0.6705	4E-12	(conditional-joint)	0.0104	[0.0075-0.0133] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1092	chr4	66470542	66470543	rs28535294	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	4q13.2		rs28535294-?	NR	1E-7				NR [~ 8900000] (imputed)	N
1092	chr4	66470812	66470813	rs4404602	22174851	Lingappa JR	2011-12-12	PLoS One	Genomewide association study for determinants of HIV-1 acquisition and viral set point in HIV-1 serodiscordant couples with quantified virus exposure.	HIV-1 viral setpoint	496 African ancestry cases	NA	4q13.2	EPHA5	rs4404602-?	NR	1E-6				Illumina [990115]	N
1092	chr4	66480993	66480994	rs60178806	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	4q13.2	Intergenic	rs60178806-T	0.6866	6E-12		0.0144	[0.01-0.019] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1092	chr4	66480993	66480994	rs60178806	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	4q13.2	Intergenic	rs60178806-T	0.686	3E-9		0.0144	[0.0097-0.0191] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1092	chr4	66496169	66496170	rs7659227	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	4q13.2	Intergenic	rs7659227-A	0.679	2E-14	(MTAG)	0.0147	[0.011-0.018] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1092	chr4	66496169	66496170	rs7659227	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	4q13.2	Intergenic	rs7659227-A	0.6785	4E-16	(MTAG)	0.0144	[0.011-0.018] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1092	chr4	66496913	66496914	rs74944857	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	4q13.2		rs74944857-T	0.3223	4E-9		0.0089	[0.006-0.0118] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1092	chr4	66496913	66496914	rs74944857	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	4q13.2	Intergenic	rs74944857-T	0.3223	9E-13	(MTAG)	0.01	[0.0073-0.0127] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1092	chr4	66496913	66496914	rs74944857	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	4q13.2	Intergenic	rs74944857-T	0.3299	5E-13	(MTAG)	0.0176	[0.013-0.022] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1092	chr4	66520666	66520667	rs6838677	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	4q13.2	EPHA5	rs6838677-C	0.33109999999999995	3E-8		1.0215285		Affymetrix [11880941] (imputed)	N
1092	chr4	66527954	66527955	rs7655988	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	4q13.2	NR	rs7655988-?	NR	4E-6		4.615	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1093	chr4	66636157	66636158	rs142024445	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	4q13.2	NR	rs142024445-?	NR	1E-9	(CXCL10)	1.20753	[0.82-1.6] unit increase	Illumina [11901634] (imputed)	N
1093	chr4	66651390	66651391	rs28584438	22205395	Tekola Ayele F	2011-12-29	Immunogenetics	Genome-wide associated loci influencing interleukin (IL)-10, IL-1Ra, and IL-6 levels in African Americans.	Interleukin-6 levels	697 African American individuals	NA	4q13.2	U2.32;U2	rs28584438-G	0.22	6E-6		0.09	unit decrease	Affymetrix [5396780] (imputed)	N
1093	chr4	66657059	66657060	rs1074532	30169916	Sun Y	2018-08-31	J Eur Acad Dermatol Venereol	Investigation of the Predisposing Factor of Pemphigus and its clinical subtype through a Genome-wide association and next generation sequence analysis.	Pemphigus vulgaris	101 Chinese ancestry cases, 844 Chinese ancestry controls	at least 56 Chinese ancestry cases, up to 996 Chinese ancestry controls	4q13.2	NR	rs1074532-A	NR	1E-6		1.81		Illumina [5546030] (imputed)	N
1093	chr4	66666894	66666895	rs201194999	34450027	Boer CG	2021-08-24	Cell	Deciphering osteoarthritis genetics across 826,690 individuals from 9 populations.	Osteoarthritis	175,803 European ancestry cases, 644,862 European ancestry controls, 1,265 Japanese ancestry cases, 449 Southern Chinese ancestry cases, 3,330 Japanese ancestry controls, 981 Southern Chinese ancestry controls	NA	4q13.2		rs201194999-T	0.3011	3E-9		0.88126224	[0.84522938-0.918831278]	Affymetrix, Illumina [NR] (imputed)	N
1093	chr4	66684478	66684479	rs7679238	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	4q13.2	NR	rs7679238-?	NR	1E-12	(cerebellar vermal lobules VIII X)			NR [9227495] (imputed)	N
1093	chr4	66690209	66690210	rs539894989	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	4q13.2		rs539894989-C	NR	3E-8		1.6093	[1.04-2.18] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1093	chr4	66690209	66690210	rs539894989	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	4q13.2		rs539894989-C	1.2E-5	3E-8		1.60928	[1.04-2.18] unit decrease	Illumina [13479295] (imputed)	N
1093	chr4	66694518	66694519	rs6821937	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	4q13.2	NR	rs6821937-?	NR	2E-14	(cerebellar vermal lobules VI VII)			NR [9227495] (imputed)	N
1093	chr4	66694518	66694519	rs6821937	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	4q13.2	NR	rs6821937-?	NR	1E-9	(cerebellar vermal lobules VIII X)			NR [9227495] (imputed)	N
1093	chr4	66700993	66700994	rs751018887	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	4q13.2	NR	rs751018887-?	NR	8E-10	(cerebellar vermal lobules VI VII)			NR [9227495] (imputed)	N
1093	chr4	66701963	66701964	rs10034561	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	4q13.2	NR	rs10034561-?	NR	3E-17	(cerebellar vermal lobules VIII X)			NR [9227495] (imputed)	N
1093	chr4	66709200	66709201	rs2350064	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	4q13.2	NR	rs2350064-?	NR	1E-9	(cerebellar vermal lobules VI VII)			NR [9227495] (imputed)	N
1094	chr4	66727891	66727892	rs4516777	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	4q13.2	NR	rs4516777-?	NR	1E-23	(cerebellar vermal lobules VI VII)			NR [9227495] (imputed)	N
1094	chr4	66733211	66733212	rs28412032	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	4q13.2	NR	rs28412032-?	NR	4E-9	(cerebellar vermal lobules VIII X)			NR [9227495] (imputed)	N
1094	chr4	66799376	66799376	rs759714828	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	4q13.2	NR	rs759714828-?	NR	4E-12	(cerebellar vermal lobules VI VII)			NR [9227495] (imputed)	N
1094	chr4	66843541	66843542	rs184621768	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	4q13.2	NR	rs184621768-A	NR	2E-8	(GEE model)	1.2709	[0.82-1.72] unit decrease	NR [NR] (imputed)	N
1095	chr4	66866031	66866032	rs2588704	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	4q13.2	NR	rs2588704-?	NR	4E-9	(cerebellar vermal lobules VI VII)			NR [9227495] (imputed)	N
1095	chr4	66876734	66876735	rs4860201	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	4q13.2		rs4860201-C	0.36	3E-9		5.95	z score increase	Affymetrix [9061022] (imputed)	N
1095	chr4	66888942	66888942	rs373045298	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		AC116049.2	rs373045298-?	NR	3E-8		0.526978	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1095	chr4	66960185	66960186	rs2726292	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	4q13.2	NR	rs2726292-?	NR	8E-12	(cerebellar vermal lobules VI VII)			NR [9227495] (imputed)	N
1095	chr4	66960845	66960846	rs2614847	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	4q13.2	NR	rs2614847-?	NR	3E-8	(cerebellar vermal lobules VIII X)			NR [9227495] (imputed)	N
1096	chr4	67012251	67012252	rs62307484	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		AC116049.2	rs62307484-?	NR	2E-8	(female)	0.528031	[NR] unit increase	Affymetrix [NR] (imputed)	N
1096	chr4	67016637	67016638	rs1599491	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	4q13.2	NR	rs1599491-?	NR	2E-9	(cerebellar vermal lobules VI VII)			NR [9227495] (imputed)	N
1096	chr4	67026016	67026017	rs114218863	34964454	Gentiluomo M	2021-11-23	Hum Mol Genet	Genome-wide association study of mitochondrial copy number.	Mitochondrial DNA copy number	6,836 European ancestry individuals	NA	4q13.2	NR	rs114218863-A	0.013	9E-7		0.2	[0.12-0.28] unit increase	Illumina [6374524] (imputed)	N
1096	chr4	67053768	67053769	rs11725618	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	4q13.2	ENSG00000249413	rs11725618-?	NR	1E-8		0.012540856	[0.0082-0.0169] unit increase	NR [7306098]	N
1096	chr4	67070823	67070824	rs11732160	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	4q13.2		rs11732160-A	0.7154	1E-11		0.0105	[0.0074-0.0136] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1096	chr4	67073142	67073143	rs1115363	25293881	Patel YM	2014-10-07	Cancer Epidemiol Biomarkers Prev	The contribution of common genetic variation to nicotine and cotinine glucuronidation in multiple ethnic/racial populations.	Cotinine glucuronidation	437 European ancestry current smoker individuals, 364 African American current smoker individuals, 453 Latino current smoker individuals, 674 Japanese ancestry current smoker individuals, 311 Native Hawaiian ancestry current smoker individuals	NA	4q13.2	LOC100144602	rs1115363-A	NR	7E-9		0.0974	[NR] unit increase	Illumina [11892802] (imputed)	N
1096	chr4	67080146	67080147	rs11723889	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	4q13.2	Intergenic	rs11723889-T	0.286	1E-9	(MTAG)	0.0088	[0.0061-0.0115] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1096	chr4	67086287	67086288	rs11940255	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking behaviour (cigarettes smoked per day)	up to 377,334 European ancestry individuals	NA	4q13.2	NR	rs11940255-A	0.717	2E-10		0.017157527	[0.012-0.022] unit decrease	NR [~ 10000000] (imputed)	N
1096	chr4	67086287	67086288	rs11940255	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Cigarettes smoked per day (MTAG)	up to 403,928 European ancestry individuals	NA	4q13.2	NR	rs11940255-A	0.717	3E-13		0.0177446	[0.013-0.023] unit decrease	NR [9732723] (imputed)	N
1096	chr4	67087488	67087489	rs7654157	26116289	Raginis-Zborowska A	2015-06-24	Exp Gerontol	Genetic determinants of swallowing impairments among community dwelling older population.	Dysphagia	71 European ancestry older adult cases, 484 European ancestry older adult controls	NA	4q13.2	intergenic	rs7654157-?	NR	5E-6		2.35	[1.63-3.38]	Illumina [4196861] (imputed)	N
1096	chr4	67096903	67096904	rs4860734	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	4q13.2	EPHA5	rs4860734-A	0.2897	3E-8		1.0196913		Affymetrix [11880941] (imputed)	N
1098	chr4	67300801	67300802	rs2009314	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	4q13.2	LOC728048	rs2009314-G	0.296	5E-6	(Dinner intake )	0.03	[NR] kcal increase	Illumina [899892]	N
1098	chr4	67301041	67301042	rs1949200	23728906	Byrne EM	2013-05-31	Am J Med Genet B Neuropsychiatr Genet	A genome-wide association study of sleep habits and insomnia.	Sleep quality	2,315 European ancestry individuals	NA	4q13.2	RP11-793B9.1	rs1949200-T	0.13	9E-6		0.18	[0.10-0.26] unit increase	Illumina [2380486] (imputed)	N
1098	chr4	67330260	67330261	rs114681481	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	4q13.2	Intergenic	rs114681481-T	0.991	3E-6	(AA)	0.664	NR unit increase	Illumina [NR] (imputed)	N
1098	chr4	67336419	67336420	rs186974661	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	4q13.2	Intergenic	rs186974661-A	0.991	3E-6	(AA)	0.675	NR unit increase	Illumina [NR] (imputed)	N
1098	chr4	67340934	67340935	rs113716462	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	4q13.2	RPS23P3	rs113716462-T	0.0094	5E-6		0.2087	[0.12-0.3] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1098	chr4	67341624	67341625	rs148684605	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	4q13.2	Intergenic	rs148684605-C	0.989	6E-7	(AA)	0.644	NR unit increase	Illumina [NR] (imputed)	N
1098	chr4	67360666	67360667	rs114120854	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	4q13.2	Intergenic	rs114120854-A	0.989	6E-7	(AA)	0.656	NR unit increase	Illumina [NR] (imputed)	N
1099	chr4	67400254	67400255	rs144063842	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	4q13.2	Intergenic	rs144063842-T	0.991	3E-6	(AA)	0.685	NR unit increase	Illumina [NR] (imputed)	N
1099	chr4	67445832	67445833	rs35150895	33445220	Li Y	2021-01-14	Am J Transplant	Donor genetic variants as risk factors for thrombosis after liver transplantation: A genome-wide association study.	Thrombosis in response to liver transplant	42 European ancestry pediatric cases, 268 European ancestry pediatric controls	64 European ancestry adult cases, 711 European ancestry adult controls	4q13.2	NR	rs35150895-A	0.05382	6E-7		3.4485	NR	Illumina [5393447] (imputed)	N
1099	chr4	67471681	67471682	rs4860766	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 11)	19,670 European ancestry individuals	NA	4q13.2		rs4860766-?	NR	3E-8				NR [9705931] (imputed)	N
1100	chr4	67502620	67502620	rs779429062	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fish- and plant-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	4q13.2	intergenic	rs779429062-?	NR	4E-8		0.0199982	[0.013-0.027] unit increase	Affymetrix [25921788] (imputed)	N
1100	chr4	67614568	67614569	rs4860223	21844884	Wheeler HE	2011-08-16	Pharmacogenomics J	Genome-wide meta-analysis identifies variants associated with platinating agent susceptibility across populations.	Response to platinum-based chemotherapy (cisplatin)	176 Sub-Saharan African ancestry lymphoblastoid cell lines, 83 African ancestry lymphoblastoid cell lines, 175 East Asian ancestry lymphoblastoid cell lines, 174 European ancestry lymphoblastoid cell lines	NA	4q13.2	intergenic	rs4860223-?		1E-6				NR [~ 3000000] (imputed)	N
1101	chr4	67639959	67639960	rs192906039	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	4q13.2	NR	rs192906039-?	NR	2E-9	(CXCL10)	1.46739	[0.99-1.94] unit increase	Illumina [11901634] (imputed)	N
1101	chr4	67697323	67697324	rs13116036	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	4q13.2	Intergenic	rs13116036-T	0.4647	9E-9	(MTAG)	0.0096	[0.0063-0.0129] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1101	chr4	67733856	67733857	rs1155865	17903297	Seshadri S	2007-09-19	BMC Med Genet	Genetic correlates of brain aging on MRI and cognitive test measures: a genome-wide association and linkage analysis in the Framingham Study.	Cognitive test performance	694 European ancestry individuals	NA	4q13.2	intergenic	rs1155865-?	NR	2E-6	(Nam)			Affymetrix [70897]	N
1101	chr4	67733902	67733903	rs1155866	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels (BMI interaction)	up to 15,007 European ancestry male individuals, up to 16,943 European ancestry female individuals	NA	4q13.2	EPHA5, CENPC1	rs1155866-G	0.55	2E-6	(Men)	0.013509792	[0.0079-0.0191] unit decrease	Affymetrix, Illumina [at least 188473] (imputed)	N
1102	chr4	67785795	67785796	rs144107180	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q13.2	NR	rs144107180-A	0.0122	1E-8	(NPC2)	0.06481	NR unit increase	Illumina [1671387] (imputed)	N
1102	chr4	67801133	67801134	rs4860797	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	4q13.2	Intergenic	rs4860797-A	0.6005	1E-10	(MTAG)	0.0151	[0.011-0.02] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1102	chr4	67802991	67802992	rs923994	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	4q13.2	NR	rs923994-?	NR	4E-9				Affymetrix [~ 8270000] (imputed)	N
1102	chr4	67802991	67802992	rs923994	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Longevity	up to 482,000 European ancestry individuals	NA	4q13.2	NR	rs923994-A	NR	7E-6		0.01103	[0.0062-0.0158] unit decrease	Illumina [~ 540852]	N
1102	chr4	67803262	67803263	rs2318543	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	4q13.2		rs2318543-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1102	chr4	67804303	67804304	rs35631117	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	4q13.2	RNU6-699P	rs35631117-T	NR	1E-10		0.019951262	[0.014-0.026] unit increase	Affymetrix [NR]	N
1102	chr4	67807853	67807854	rs11947612	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (father's age at death or father's attained age)	up to 699,000 European ancestry individuals	NA	4q13.2	NR	rs11947612-A		2E-6				Illumina [458865]	N
1102	chr4	67808110	67808110	rs113796315	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	4q13.2		rs113796315-AAGAC	NR	2E-10		0.0181	[0.012-0.024] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1102	chr4	67813016	67813017	rs2164300	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		4q13.2	CENPC	rs2164300-C	0.480766	4E-8		0.00754945	[0.0049-0.0102] unit increase	Affymetrix [12370749]	N
1102	chr4	67813754	67813755	rs1481266	31324189	Kim W	2019-07-19	Respir Res	DSP variants may be associated with longitudinal change in quantitative emphysema.	Emphysema annual change measurement in smokers (percent low attenuation area)	4,427 European ancestry individuals, 1,158 African American individuals	NA	4q13.2	CENPC	rs1481266-C	0.028	9E-6	(EA)	0.306	[0.17-0.44] unit increase	Illumina [NR] (imputed)	N
1102	chr4	67815503	67815504	rs10002111	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	4q13.2	NA	rs10002111-A	0.2227	1E-9		0.0125	[0.0084-0.0166] unit increase	NR [~ 27400000] (imputed)	N
1102	chr4	67815503	67815504	rs10002111	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	4q13.2	NA	rs10002111-A	0.2227	1E-9		0.0125	[0.0084-0.0166] unit increase	NR [~ 27400000] (imputed)	N
1102	chr4	67817415	67817416	rs1594996	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	4q13.2	RNU6-699P	rs1594996-C	0.4353	1E-10		0.013056141	[0.0091-0.017] unit increase	Affymetrix [up to 18485882] (imputed)	N
1102	chr4	67821873	67821874	rs4308415	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	4q13.2	NR	rs4308415-C	0.4419	3E-9		0.013333575	NR unit decrease	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
1102	chr4	67825893	67825894	rs993700	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	4q13.2	intergenic	rs993700-T	0.22252	3E-10		0.0157496	[0.011-0.021] unit decrease	NR [16516521] (imputed)	N
1102	chr4	67825893	67825894	rs993700	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking initiation	842,717 European ancestry individuals	NA	4q13.2	MIR1269A, LOC101927237	rs993700-T		4E-10		1.026	[NR]	Affymetrix [up to 79000000] (imputed)	N
1102	chr4	67831580	67831581	rs2318540	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	4q13.2		rs2318540-T	0.4378	6E-19	(conditional-joint)	0.0126	[0.0099-0.0153] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1102	chr4	67851522	67851522	rs748326686	31589552	Lind L	2019-10-07	Metab Syndr Relat Disord	Genome-Wide Association Study of the Metabolic Syndrome in UK Biobank.	Metabolic syndrome	291,107 European ancestry individuals	NA	4q13.2	LOC101927237	rs748326686-CT	0.37669	6E-10		0.042439	[0.029-0.056] unit increase	Affymetrix [9463307] (imputed)	N
1102	chr4	67890147	67890148	rs1435428	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	4q13.2		rs1435428-G	0.224	4E-10		0.009	[0.007-0.011] unit increase	NR [NR] (imputed)	N
1103	chr4	67899234	67899235	rs12506221	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	4q13.2	Intergenic	rs12506221-T	0.4439	1E-15	(MTAG)	0.0133	[0.01-0.0166] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1103	chr4	67899234	67899235	rs12506221	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	4q13.2		rs12506221-T	0.436	4E-20		0.013	[0.01-0.016] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1103	chr4	67899234	67899235	rs12506221	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	4q13.2	Intergenic	rs12506221-T	0.436	3E-23	(MTAG)	0.0131	[0.011-0.016] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1103	chr4	67947007	67947008	rs72636644	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	4q13.2	NR	rs72636644-G	0.882615	1E-8		0.0174148	[0.011-0.023] unit decrease	NR [NR]	N
1103	chr4	67951129	67951130	rs186407552	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	4q13.2	NR	rs186407552-?	NR	1E-9	(CXCL10)	1.30159	[0.88-1.72] unit increase	Illumina [11901634] (imputed)	N
1103	chr4	67958505	67958506	rs1157317	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	4q13.2	Intergenic	rs1157317-T	0.2233	9E-10	(MTAG)	0.0132	[0.0091-0.0173] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1103	chr4	67958505	67958506	rs1157317	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	4q13.2	Intergenic	rs1157317-T	0.2233	4E-8		0.0129	[0.0084-0.0174] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1103	chr4	67959874	67959875	rs10518019	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	4q13.2		rs10518019-?	NR	2E-14				NR [~ 8900000] (imputed)	N
1103	chr4	67970100	67970101	rs6819372	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	4q13.2	NR	rs6819372-A	0.492048	9E-11		0.04075716	[0.028-0.053] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1103	chr4	67970100	67970101	rs6819372	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	4q13.2	Intergenic	rs6819372-A	0.4683	7E-11		0.0187	[0.013-0.024] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
1103	chr4	67970100	67970101	rs6819372	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	4q13.2	NR	rs6819372-A	NR	4E-13		7.255	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1103	chr4	67970100	67970101	rs6819372	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	4q13.2	RNU6-699P	rs6819372-A	NR	3E-10		6.297	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1103	chr4	67980829	67980830	rs10454798	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking behaviour (cigarettes smoked per day)	up to 377,334 European ancestry individuals	NA	4q13.2	NR	rs10454798-T	0.253	2E-8	(Conditioned on chr4:67086288)	0.015841978	[0.01-0.021] unit increase	NR [~ 10000000] (imputed)	N
1103	chr4	67980829	67980830	rs10454798	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Cigarettes smoked per day (MTAG)	up to 403,928 European ancestry individuals	NA	4q13.2	NR	rs10454798-T	0.253	2E-12		0.0175904	[0.013-0.022] unit increase	NR [9732723] (imputed)	N
1103	chr4	68000887	68000888	rs7682598	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation	up to 341,427 European ancestry individuals	NA	4q13.2	NR	rs7682598-G	0.771	2E-9		0.017	[0.011-0.023] unit increase	NR [~ 10000000] (imputed)	N
1103	chr4	68003443	68003444	rs17088032	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	4q13.2		rs17088032-A	NR	3E-8		0.0179	[0.012-0.024] unit increase	Affymetrix, Illumina [20529698] (imputed)	N
1103	chr4	68013281	68013282	rs2194888	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	4q13.2	NR	rs2194888-C	0.77	1E-18		0.0152216	[0.012-0.019] unit increase	NR [9732723] (imputed)	N
1103	chr4	68014556	68014557	rs6552076	34177598	Wolking S	2021-06-09	Front Pharmacol	Role of Common Genetic Variants for Drug-Resistance to Specific Anti-Seizure Medications.	Response to oxcarbazepine in focal epilepsy	98 European ancestry cases, 296 European ancestry controls	NA			rs6552076-?	NR	6E-6				Illumina [NR] (imputed)	N
1103	chr4	68016608	68016609	rs72636697	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	4q13.2		rs72636697-T	0.1551	1E-12		0.014	[0.01-0.018] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1103	chr4	68016608	68016609	rs72636697	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	4q13.2	Intergenic	rs72636697-T	0.1551	1E-11	(MTAG)	0.0125	[0.009-0.016] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1103	chr4	68017709	68017710	rs112725451	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	4q13.2	NR	rs112725451-T	0.169	2E-20		0.0133273	[0.011-0.016] unit increase	NR [9732723] (imputed)	N
1103	chr4	68017709	68017710	rs112725451	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	4q13.2	NR	rs112725451-T	0.169	2E-14		0.026092	[0.019-0.033] unit increase	NR [~ 10000000] (imputed)	N
1103	chr4	68019508	68019509	rs72636700	33128006	Timmins IR	2020-10-30	Commun Biol	Genome-wide association study of self-reported walking pace suggests beneficial effects of brisk walking on health and survival.	Walking pace	450,967 European ancestry individuals	NA	4q13.2	CENPC	rs72636700-T	NR	4E-8		0.0092244	[0.0059-0.0125] unit increase	Affymetrix [10061374] (imputed)	N
1103	chr4	68019520	68019521	rs4457002	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Verbal-numerical reasoning	171,304 British ancestry individuals	NA	4q13.2		rs4457002-?	NR	4E-8				NR [7857346] (imputed)	N
1104	chr4	68028540	68028541	rs2114033	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	4q13.2	Intergenic	rs2114033-T	0.5557	2E-15	(MTAG)	0.0183	[0.014-0.023] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1104	chr4	68034718	68034719	rs1346081	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	4q13.2	RP11-584P21.2	rs1346081-A	NR	2E-12		0.02070442	[0.015-0.026] unit increase	Affymetrix [NR]	N
1104	chr4	68056612	68056613	rs7690543	25524916	Palmer ND	2014-12-18	Diabetes	Genetic Variants Associated With Quantitative Glucose Homeostasis Traits Translate to Type 2 Diabetes in Mexican Americans: The GUARDIAN (Genetics Underlying Diabetes in Hispanics) Consortium.	Glucose homeostasis traits	up to 4,176 Mexican American individuals	NA	4q13.2	intergenic	rs7690543-?		2E-6	(SI)	0.28	[0.1-0.46] unit increase	Illumina [693128]	N
1104	chr4	68064344	68064345	rs17766081	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Positive affect	180,281 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	4q13.2	NR	rs17766081-C	0.5111	8E-6		0.0157	[0.0088-0.0226] unit increase	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
1104	chr4	68064439	68064440	rs10518025	19010793	Baranzini SE	2008-11-14	Hum Mol Genet	Genome-wide association analysis of susceptibility and clinical phenotype in multiple sclerosis.	Multiple sclerosis (severity)	794 European ancestry cases, 883 European ancestry controls	NA	4q13.2	CENPC1	rs10518025-?	0.14	4E-6			[NR]	Illumina [551642]	N
1104	chr4	68081560	68081561	rs62315512	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	4q13.2	NR	rs62315512-A	0.1778	5E-6	(EA)	0.04	[0.023-0.057] unit decrease	Illumina [~ 11800000] (imputed)	N
1105	chr4	68182765	68182766	rs193029098	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	4q13.2	NR	rs193029098-?	NR	1E-9	(CXCL10)	3.91854	[2.65-5.18] unit increase	Illumina [11901634] (imputed)	N
1105	chr4	68195137	68195138	rs2165328	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota relative abundance (bacterial taxa)	up to 858 Metropolitan French ancestry individuals	NA	4q13.2	NR	rs2165328-?	NR	2E-8	(Clostridium_xylanovorans)	0.57207	[0.38-0.76] unit increase	Illumina [5293637] (imputed)	N
1106	chr4	68361954	68361955	rs116264298	30420678	Tasa T	2018-11-12	Eur J Hum Genet	Genetic variation in the Estonian population: pharmacogenomics study of adverse drug effects using electronic health records.	Adverse response to drug	16,226 European ancestry individuals	NA	4q13.2	CENPC	rs116264298-C	0.039	5E-7	(Macrolides [J01FA])	2.09		Illumina [16500000] (imputed)	N
1107	chr4	68447248	68447249	rs2242330	31626034	Thomsen H	2019-10-11	Melanoma Res	Genome-wide study on uveal melanoma patients finds association to DNA repair gene TDP1.	Uveal melanoma (TNM stage 3 or 4)	255 European ancestry cases, 5,199 European ancestry controls	NA	4q13.2		rs2242330-G	0.21	3E-7		1.67		Illumina [10258281] (imputed)	N
1107	chr4	68447248	68447249	rs2242330	17052657	Fung HC	2006-09-28	Lancet Neurol	Genome-wide genotyping in Parkinson's disease and neurologically normal controls: first stage analysis and public release of data.	Parkinson's disease	267 European ancestry cases, 270 European ancestry controls	NA	4q13.2	BRDG1	rs2242330-?	NR	2E-6		2.0	[1.43-2.50]	Illumina [408803]	N
1107	chr4	68455301	68455302	rs7692528	31626034	Thomsen H	2019-10-11	Melanoma Res	Genome-wide study on uveal melanoma patients finds association to DNA repair gene TDP1.	Disease severity in uveal melanoma (TNM stage 3 or 4 vs TNM stage 1 or 2)	330 European ancestry stage 3 or 4 cases, 255 European ancestry stage 1 or 2 cases	NA	4q13.2		rs7692528-G	0.28	4E-6		1.83		Illumina [10258281] (imputed)	N
1108	chr4	68607391	68607392	rs150790650	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	4q13.2	NR	rs150790650-?	NR	2E-9	(CXCL10)	1.2981	[0.88-1.72] unit increase	Illumina [11901634] (imputed)	N
1108	chr4	68618190	68618191	rs10031252	29970889	Day FR	2018-07-03	Nat Commun	Elucidating the genetic basis of social interaction and isolation.	Regular attendance at a pub or social club	124,047 European ancestry cases, 328,255 European ancestry controls	NA	4q13.2	CENPC1, STAP1, UBA6, LOC550112, GNRHR, TMPRSS11D, TMPRSS11A, TMPRSS11GP	rs10031252-A	0.4732	7E-9		0.00535342	[0.0035-0.0072] unit increase	NR [NR] (imputed)	N
1108	chr4	68644089	68644090	rs2627244	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	4q13.2	TMPRSS11D	rs2627244-?	NR	7E-6	(valine)	0.7380642	[0.42-1.06] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1109	chr4	68746931	68746932	rs74316172	28203683	Heit JA	2017-02-16	Thromb Haemost	Identification of unique venous thromboembolism-susceptibility variants in African-Americans.	Venous thromboembolism adjusted for sickle cell variant rs77121243-T	393 African American cases, 4,941 African American controls.	NR	4q13.2	TMPRSS11D	rs74316172-G	0.0143	9E-7		3.352	[2.068-5.434]	Affymetrix, Illumina [14074516] (imputed)	N
1111	chr4	68978568	68978569	rs13107461	26379185	Garcia-Etxebarria K	2015-09-17	PLoS One	No Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity.	Severe influenza A (H1N1) infection	49 European ancestry severe cases, 549 European ancestry population controls	NA	4q13.2	TMPRSS11F	rs13107461-?	0.007605	3E-9		12.18	[4.3-34.5]	Affymetrix [547296]	N
1111	chr4	69006186	69006189	rs199739975	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 2, vertical position of orbits relative to midface)	2,187 European ancestry individuals	NA	4q13.2	NR	rs199739975-T	0.01194	4E-6		0.6487	[0.37-0.92] unit increase	Illumina [10677593] (imputed)	N
1111	chr4	69016855	69016856	rs185537126	28203683	Heit JA	2017-02-16	Thromb Haemost	Identification of unique venous thromboembolism-susceptibility variants in African-Americans.	Venous thromboembolism adjusted for sickle cell variant rs77121243-T	393 African American cases, 4,941 African American controls.	NR	4q13.2	TMPRSS11F	rs185537126-A	0.0185	6E-6		2.942	[1.841-4.701]	Affymetrix, Illumina [14074516] (imputed)	N
1112	chr4	69158769	69158770	rs139644052	28203683	Heit JA	2017-02-16	Thromb Haemost	Identification of unique venous thromboembolism-susceptibility variants in African-Americans.	Venous thromboembolism adjusted for sickle cell variant rs77121243-T	393 African American cases, 4,941 African American controls.	NR	4q13.2	LOC100422188	rs139644052-T	0.0199	5E-6		2.735	[1.772-4.22]	Affymetrix, Illumina [14074516] (imputed)	N
1112	chr4	69167670	69167671	rs939207	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	4q13.2	YTHDC1	rs939207-A	0.142	3E-6	(Hip circumference change )	0.03	[NR] cm/y increase	Illumina [899892]	N
1112	chr4	69189047	69189048	rs1730872	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	4q13.2	YTHDC1	rs1730872-G	0.822425	7E-10		0.017977066	[0.012-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1112	chr4	69189047	69189048	rs1730872	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	4q13.2		rs1730872-?	NR	9E-15				NR [~ 8900000] (imputed)	N
1113	chr4	69231030	69231031	rs35051311	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	4q13.2		rs35051311-C	0.825639	3E-10		0.020057	[0.015-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1113	chr4	69244696	69244697	rs34631417	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	4q13.2		rs34631417-T	NR	4E-14		0.0236	[0.018-0.03] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
1113	chr4	69287292	69287293	rs149760740	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	4q13.2		rs149760740-T	NR	1E-5		3.5246	[1.99-5.06] unit increase	Illumina [NR] (imputed)	N
1113	chr4	69301940	69301941	rs149605813	30353303	Seo M	2018-10-23	J Mol Med (Berl)	Genomics and response to long-term oxygen therapy in chronic obstructive pulmonary disease.	Response to long-term oxygen therapy in chronic obstructive pulmonary disease	290 European ancestry individuals	NA	4q13.2	NR	rs149605813-?	NR	4E-6				Illumina [5946283] (imputed)	N
1113	chr4	69306773	69306774	rs34041362	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	4q13.2	NR	rs34041362-G	NR	3E-23		0.0267	[0.021-0.032] unit increase	Affymetrix [9000000] (imputed)	N
1113	chr4	69306773	69306774	rs34041362	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	4q13.2	NR	rs34041362-G	NR	1E-19		0.0256	[0.02-0.031] unit increase	Affymetrix [9000000] (imputed)	N
1113	chr4	69306773	69306774	rs34041362	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	4q13.2	NR	rs34041362-G	NR	1E-23		0.0269	[0.022-0.032] unit decrease	Affymetrix [9000000] (imputed)	N
1113	chr4	69306773	69306774	rs34041362	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	4q13.2	NR	rs34041362-G	NR	5E-16		0.0218	[0.017-0.027] unit increase	Affymetrix [9000000] (imputed)	N
1113	chr4	69306773	69306774	rs34041362	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	4q13.2	NR	rs34041362-G	NR	4E-25		0.0279	[0.023-0.033] unit decrease	Affymetrix [9000000] (imputed)	N
1113	chr4	69306773	69306774	rs34041362	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	4q13.2	NR	rs34041362-G	NR	4E-12		0.0187	[0.013-0.024] unit increase	Affymetrix [9000000] (imputed)	N
1113	chr4	69306773	69306774	rs34041362	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	4q13.2	NR	rs34041362-G	NR	2E-11		0.0188	[0.013-0.024] unit increase	Affymetrix [9000000] (imputed)	N
1113	chr4	69319691	69319692	rs1919903	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Total cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	4q13.2	TMPRSS11E	rs1919903-?		6E-9		0.0273	[0.018-0.037] unit increase	Illumina [31500000] (imputed)	N
1113	chr4	69319691	69319692	rs1919903	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Low density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	4q13.2	TMPRSS11E	rs1919903-?		4E-8		0.0301	[0.019-0.041] unit increase	Illumina [31500000] (imputed)	N
1113	chr4	69324066	69324066	rs34327193	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in IDL	115,082 European ancestry individuals	NA	4q13.2		rs34327193-T	0.677146	9E-10		0.0273348	[0.019-0.036] unit decrease	NR [11722792] (imputed)	N
1113	chr4	69326682	69326683	rs4694077	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	4q13.2	TMPRSS11E	rs4694077-C	0.68	2E-25		10.4	z-score increase	Affymetrix [4311822] (imputed)	N
1113	chr4	69331331	69331331	rs34768803	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large HDL	115,082 European ancestry individuals	NA	4q13.2		rs34768803-G	0.763931	1E-11		0.0325935	[0.023-0.042] unit decrease	NR [11722792] (imputed)	N
1113	chr4	69331331	69331331	rs34768803	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large LDL	115,082 European ancestry individuals	NA	4q13.2		rs34768803-G	0.763931	2E-8		0.027441	[0.018-0.037] unit decrease	NR [11722792] (imputed)	N
1113	chr4	69331331	69331331	rs34768803	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very small VLDL	115,082 European ancestry individuals	NA	4q13.2		rs34768803-G	0.763931	3E-11		0.0323455	[0.023-0.042] unit decrease	NR [11722792] (imputed)	N
1113	chr4	69331331	69331331	rs34768803	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very small VLDL particles	115,082 European ancestry individuals	NA	4q13.2		rs34768803-G	0.763931	1E-10		0.0313323	[0.022-0.041] unit decrease	NR [11722792] (imputed)	N
1113	chr4	69333809	69333810	rs2603192	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls	NA	4q13.2	TMPRSS11E	rs2603192-C	0.413377	8E-9		0.033421762	[0.022-0.045] unit decrease	Affymetrix [7288503] (imputed)	N
1114	chr4	69338310	69338311	rs969114	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	4q13.2	TMPRSS11E	rs969114-A	0.5722	1E-26		0.029	[0.024-0.034] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1114	chr4	69339256	69339257	rs34872892	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	4q13.2	TMPRSS11E	rs34872892-G	0.2108	6E-9		0.02561079	[0.017-0.034] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1114	chr4	69339932	69339933	rs35662434	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	4q13.2		rs35662434-A	0.766288	2E-8		0.0275748	[0.018-0.037] unit increase	NR [11722792] (imputed)	N
1114	chr4	69339932	69339933	rs35662434	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	4q13.2		rs35662434-A	0.766288	3E-8		0.0258009	[0.017-0.035] unit decrease	NR [11722792] (imputed)	N
1114	chr4	69339932	69339933	rs35662434	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	4q13.2	TMPRSS11E	rs35662434-G	0.234468	5E-10		0.0204748	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1114	chr4	69340990	69340991	rs4860948	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total phospholipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	4q13.2		rs4860948-T	0.755662	2E-12		0.0323994	[0.023-0.041] unit decrease	NR [11722792] (imputed)	N
1114	chr4	69340990	69340991	rs4860948	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very small VLDL	115,082 European ancestry individuals	NA	4q13.2		rs4860948-T	0.755662	8E-12		0.0322122	[0.023-0.041] unit decrease	NR [11722792] (imputed)	N
1114	chr4	69340990	69340991	rs4860948	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	4q13.2		rs4860948-T	0.755662	1E-9		0.0287168	[0.019-0.038] unit decrease	NR [11722792] (imputed)	N
1114	chr4	69340990	69340991	rs4860948	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in IDL	115,082 European ancestry individuals	NA	4q13.2		rs4860948-T	0.755662	1E-8		0.0266982	[0.018-0.036] unit decrease	NR [11722792] (imputed)	N
1114	chr4	69340990	69340991	rs4860948	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total free cholesterol levels	115,082 European ancestry individuals	NA	4q13.2		rs4860948-T	0.755662	2E-8		0.0264591	[0.017-0.036] unit decrease	NR [11722792] (imputed)	N
1114	chr4	69340990	69340991	rs4860948	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total fatty acid levels	115,006 European ancestry individuals	NA	4q13.2		rs4860948-T	0.755649	6E-9		0.027714	[0.018-0.037] unit decrease	NR [11722792] (imputed)	N
1114	chr4	69340990	69340991	rs4860948	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total esterified cholesterol levels	115,082 European ancestry individuals	NA	4q13.2		rs4860948-T	0.755662	4E-8		0.0255976	[0.016-0.035] unit decrease	NR [11722792] (imputed)	N
1114	chr4	69340990	69340991	rs4860948	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholines levels	115,006 European ancestry individuals	NA	4q13.2		rs4860948-T	0.755649	3E-13		0.0330627	[0.024-0.042] unit decrease	NR [11722792] (imputed)	N
1114	chr4	69340990	69340991	rs4860948	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol levels	115,082 European ancestry individuals	NA	4q13.2		rs4860948-T	0.755662	3E-8		0.0259895	[0.017-0.035] unit decrease	NR [11722792] (imputed)	N
1114	chr4	69340990	69340991	rs4860948	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Polyunsaturated fatty acid levels	115,006 European ancestry individuals	NA	4q13.2		rs4860948-T	0.755649	4E-13		0.0339763	[0.025-0.043] unit decrease	NR [11722792] (imputed)	N
1114	chr4	69340990	69340991	rs4860948	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in IDL	115,082 European ancestry individuals	NA	4q13.2		rs4860948-T	0.755662	1E-9		0.0282249	[0.019-0.037] unit decrease	NR [11722792] (imputed)	N
1114	chr4	69340990	69340991	rs4860948	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphoglycerides levels	115,006 European ancestry individuals	NA	4q13.2		rs4860948-T	0.755649	1E-13		0.0338023	[0.025-0.043] unit decrease	NR [11722792] (imputed)	N
1114	chr4	69340990	69340991	rs4860948	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphatidylcholine levels	115,006 European ancestry individuals	NA	4q13.2		rs4860948-T	0.755649	3E-15		0.0355022	[0.027-0.044] unit decrease	NR [11722792] (imputed)	N
1114	chr4	69340990	69340991	rs4860948	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-6 fatty acid levels	115,006 European ancestry individuals	NA	4q13.2		rs4860948-T	0.755649	1E-9		0.0285942	[0.019-0.038] unit decrease	NR [11722792] (imputed)	N
1114	chr4	69340990	69340991	rs4860948	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	4q13.2		rs4860948-T	0.755662	9E-11		0.0305913	[0.021-0.04] unit decrease	NR [11722792] (imputed)	N
1114	chr4	69340990	69340991	rs4860948	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	4q13.2		rs4860948-T	0.755662	4E-11		0.030842	[0.022-0.04] unit decrease	NR [11722792] (imputed)	N
1114	chr4	69341486	69341487	rs976058	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	4q13.2	TMPRSS11E	rs976058-T	0.5856	2E-16		0.022	[0.017-0.027] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1114	chr4	69343286	69343287	rs976002	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	4q13.2	TMPRSS11E	rs976002-A	0.75471	5E-24		0.0230775	[0.019-0.028] unit decrease	Affymetrix [NR] (imputed)	N
1114	chr4	69343286	69343287	rs976002	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	Total cholesterol levels	up to 237,050 European ancestry individuals, up to 16,935 African ancestry individuals, up to 30,468 South Asian ancestry individuals, up to 8,287 East Asian ancestry individuals, 5,084 Hispanic individuals	up to 286,268 European and unknown ancestry individuals	4q13.2	NR	rs976002-G	NR	4E-46		0.03145003	[0.027-0.036] unit increase	Illumina [242289]	N
1114	chr4	69343286	69343287	rs976002	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	Total cholesterol levels	up to 237,050 European ancestry individuals	NA	4q13.2	NR	rs976002-G	0.23	1E-19		0.032	unit increase	Illumina [242289]	N
1114	chr4	69345131	69345132	rs1377870	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	4q13.2	NR	rs1377870-G	NR	1E-24		0.0273	[0.022-0.033] unit decrease	Affymetrix [9000000] (imputed)	N
1114	chr4	69345131	69345132	rs1377870	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	4q13.2	NR	rs1377870-G	NR	5E-17		0.0234	[0.018-0.029] unit decrease	Affymetrix [9000000] (imputed)	N
1114	chr4	69345131	69345132	rs1377870	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	4q13.2	NR	rs1377870-G	NR	2E-19		0.0241	[0.019-0.029] unit increase	Affymetrix [9000000] (imputed)	N
1114	chr4	69345131	69345132	rs1377870	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	4q13.2	NR	rs1377870-G	NR	4E-18		0.0231	[0.018-0.028] unit decrease	Affymetrix [9000000] (imputed)	N
1114	chr4	69345131	69345132	rs1377870	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	4q13.2	NR	rs1377870-G	NR	1E-27		0.029	[0.024-0.034] unit increase	Affymetrix [9000000] (imputed)	N
1114	chr4	69345131	69345132	rs1377870	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	4q13.2	NR	rs1377870-G	NR	1E-11		0.018	[0.013-0.023] unit increase	Affymetrix [9000000] (imputed)	N
1114	chr4	69345131	69345132	rs1377870	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	4q13.2	NR	rs1377870-G	NR	8E-14		0.0199	[0.015-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
1114	chr4	69345131	69345132	rs1377870	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	4q13.2	NR	rs1377870-G	NR	2E-12		0.0196	[0.014-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
1114	chr4	69349017	69349018	rs1117816	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	4q13.2	TMPRSS11E	rs1117816-A	0.78	2E-10		0.0212	[0.015-0.028] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1114	chr4	69353862	69353863	rs10020631	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large HDL	115,082 European ancestry individuals	NA	4q13.2		rs10020631-G	0.752257	1E-15		0.0365244	[0.028-0.045] unit decrease	NR [11722792] (imputed)	N
1114	chr4	69354349	69354350	rs34109652	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	4q13.2	NR	rs34109652-A	NR	1E-9		0.0154	[0.011-0.02] unit decrease	Affymetrix [9000000] (imputed)	N
1114	chr4	69357049	69357050	rs35088884	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Sphingomyelin levels	115,006 European ancestry individuals	NA	4q13.2		rs35088884-A	0.346565	9E-9		0.0234809	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
1114	chr4	69357049	69357050	rs35088884	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very small VLDL	115,082 European ancestry individuals	NA	4q13.2		rs35088884-A	0.346561	5E-11		0.0277738	[0.02-0.036] unit decrease	NR [11722792] (imputed)	N
1114	chr4	69357049	69357050	rs35088884	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	4q13.2		rs35088884-C	NR	1E-9		0.0135	[0.0092-0.0178] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
1114	chr4	69358040	69358041	rs4694429	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	4q13.2	TMPRSS11E	rs4694429-A	0.34	6E-24	(11-ketoetiocholanolone sulfate)	0.617	[0.5-0.74] unit increase	Illumina [7750367] (imputed)	N
1114	chr4	69359222	69359223	rs34638591	32157176	Buchwald J	2020-03-10	Mol Psychiatry	Genome-wide association meta-analysis of nicotine metabolism and cigarette consumption measures in smokers of European descent.	Nicotine metabolite ratio in current smokers	5,185 European ancestry individuals	NA	4q13.2		rs34638591-T	0.43	1E-12		0.175	[0.13-0.22] unit increase	Illumina [9622178] (imputed)	N
1114	chr4	69359279	69359280	rs34103191	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	4q13.2	TMPRSS11E	rs34103191-A	0.34	4E-93	(X - 19141)	0.574	[0.52-0.63] unit decrease	Illumina [7750367] (imputed)	N
1114	chr4	69360759	69360760	rs34594059	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	4q13.2	TMPRSS11E	rs34594059-C	0.34	2E-27	(X - 19434 )	0.764	[0.62-0.9] unit decrease	Illumina [7750367] (imputed)	N
1114	chr4	69361444	69361445	rs35777071	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	4q13.2	TMPRSS11E	rs35777071-T	0.345738	4E-15		0.0158975	[0.012-0.02] unit decrease	Affymetrix [NR] (imputed)	N
1114	chr4	69366825	69366825	rs202059056	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	4q13.2	UGT2B17	rs202059056-?	NR	4E-8		0.0152	[0.01-0.02] unit increase	Affymetrix [5701386] (imputed)	N
1114	chr4	69367871	69367872	rs2603151	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	4q13.2		rs2603151-?	NR	8E-10				NR [~ 8900000] (imputed)	N
1114	chr4	69367871	69367872	rs2603151	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	4q13.2	intergenic	rs2603151-A	0.3612	1E-9		0.0168	[0.011-0.022] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1114	chr4	69372081	69372082	rs35057908	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	417,580 European ancestry individuals	NA	4q13.2		rs35057908-A	0.568691	4E-8		0.011	[0.0071-0.0149] unit increase	NR [7250403] (imputed)	N
1114	chr4	69373406	69373407	rs9884390	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in HDL	115,082 European ancestry individuals	NA	4q13.2		rs9884390-T	0.765963	2E-9		0.0266093	[0.018-0.035] unit decrease	NR [11722792] (imputed)	N
1114	chr4	69373406	69373407	rs9884390	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in HDL	115,082 European ancestry individuals	NA	4q13.2		rs9884390-T	0.765963	6E-10		0.027635	[0.019-0.036] unit decrease	NR [11722792] (imputed)	N
1114	chr4	69373406	69373407	rs9884390	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	4q13.2		rs9884390-T	0.765963	2E-9		0.0263044	[0.018-0.035] unit decrease	NR [11722792] (imputed)	N
1114	chr4	69373406	69373407	rs9884390	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	4q13.2		rs9884390-T	0.765963	2E-8		0.0253536	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
1114	chr4	69373406	69373407	rs9884390	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in HDL	115,082 European ancestry individuals	NA	4q13.2		rs9884390-T	0.765963	8E-11		0.0283795	[0.02-0.037] unit decrease	NR [11722792] (imputed)	N
1114	chr4	69373406	69373407	rs9884390	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large HDL particles	115,082 European ancestry individuals	NA	4q13.2		rs9884390-T	0.765963	1E-8		0.0253177	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
1114	chr4	69373406	69373407	rs9884390	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein A1 levels	115,082 European ancestry individuals	NA	4q13.2		rs9884390-T	0.765963	2E-8		0.0253862	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
1114	chr4	69373406	69373407	rs9884390	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	4q13.2		rs9884390-C	NR	5E-30		0.0314	[0.026-0.037] unit increase	Affymetrix, Illumina [20536134] (imputed)	N
1114	chr4	69373406	69373407	rs9884390	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	4q13.2		rs9884390-C	NR	3E-19		0.0252	[0.02-0.031] unit increase	Affymetrix, Illumina [20521447] (imputed)	N
1114	chr4	69373406	69373407	rs9884390	34337532	Fantus RJ	2021-05-25	Eur Urol Open Sci	Genetic Susceptibility for Low Testosterone in Men and Its Implications in Biology and Screening: Data from the UK Biobank.	Low testosterone levels	13,409 European ancestry male cases, 98,267 European ancestry male controls	4,426 European ancestry male cases, 32,800 European ancestry male controls	4q13.2	NR	rs9884390-T	0.77	2E-10		1.09	NR	NR [8853336] (imputed)	N
1114	chr4	69373406	69373407	rs9884390	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Forns index in high alcohol intake	33,437 British ancestry individuals	NA	4q13.2		rs9884390-?	0.233	2E-11		0.003795	unit decrease	NR [6200000] (imputed)	N
1114	chr4	69373406	69373407	rs9884390	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	4q13.2	TMPRSS11E	rs9884390-T	0.76588	7E-24		0.0251131	[0.02-0.03] unit decrease	Affymetrix [NR] (imputed)	N
1114	chr4	69373406	69373407	rs9884390	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	4q13.2	TMPRSS11E	rs9884390-T	0.765925	1E-20		0.0231946	[0.018-0.028] unit decrease	Affymetrix [NR] (imputed)	N
1114	chr4	69382399	69382401	rs546475500	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	4q13.2	UGT2B29P	rs546475500-G	0.2906	4E-9		0.02627355	[0.018-0.035] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1114	chr4	69395639	69395639	rs146138775	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	4q13.2		rs146138775-TA	0.230042	3E-11		0.019302102	[0.014-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1114	chr4	69446430	69446431	rs13101719	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	4q13.2	UGT2B17	rs13101719-T	0.583262	4E-16		0.0195594	[0.015-0.024] unit decrease	Affymetrix [NR] (imputed)	N
1114	chr4	69453238	69453239	rs6838228	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	4q13.2	UGT2B17	rs6838228-G	0.64	2E-20	(DNA repair protein RAD51 homolog 4, RAD51L3.12554.10.3)	0.27	[0.21-0.33] unit increase	Affymetrix [10572788] (imputed)	N
1115	chr4	69474675	69474676	rs7438888	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	4q13.2	NR	rs7438888-C	0.0053233	3E-18		0.0688499	[0.053-0.085] unit increase	Affymetrix [16582621] (imputed)	N
1115	chr4	69474675	69474676	rs7438888	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	4q13.2	NR	rs7438888-C	0.0053233	1E-16		0.0708845	[0.054-0.088] unit increase	Affymetrix [16582614] (imputed)	N
1115	chr4	69482383	69482383	rs368166328	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	4q13.2		rs368166328-C	0.759935	3E-8		0.0275884	[0.018-0.037] unit decrease	NR [11722792] (imputed)	N
1115	chr4	69482383	69482383	rs368166328	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large HDL	115,082 European ancestry individuals	NA	4q13.2		rs368166328-C	0.759935	2E-8		0.0280592	[0.018-0.038] unit decrease	NR [11722792] (imputed)	N
1115	chr4	69482383	69482383	rs368166328	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	4q13.2		rs368166328-C	0.759935	1E-8		0.0285236	[0.019-0.038] unit decrease	NR [11722792] (imputed)	N
1115	chr4	69482383	69482383	rs368166328	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	4q13.2		rs368166328-C	0.759935	3E-8		0.0277123	[0.018-0.038] unit decrease	NR [11722792] (imputed)	N
1115	chr4	69482383	69482383	rs368166328	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	4q13.2		rs368166328-C	0.759935	1E-8		0.0288005	[0.019-0.039] unit decrease	NR [11722792] (imputed)	N
1115	chr4	69491182	69491183	rs13121671	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	4q13.2		rs13121671-G	0.697333	1E-8		0.0286667	[0.019-0.039] unit increase	NR [11722792] (imputed)	N
1115	chr4	69491182	69491183	rs13121671	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	4q13.2		rs13121671-G	0.69732	7E-10		0.0305406	[0.021-0.04] unit decrease	NR [11722792] (imputed)	N
1115	chr4	69491283	69491284	rs4860987	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to omega-3 fatty acids	115,006 European ancestry individuals	NA	4q13.2		rs4860987-A	0.741388	1E-17		0.0411323	[0.032-0.051] unit increase	NR [11722792] (imputed)	N
1115	chr4	69491283	69491284	rs4860987	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-3 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	4q13.2		rs4860987-A	0.741388	2E-16		0.0394847	[0.03-0.049] unit decrease	NR [11722792] (imputed)	N
1115	chr4	69491283	69491284	rs4860987	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-3 fatty acid levels	115,006 European ancestry individuals	NA	4q13.2		rs4860987-A	0.741388	5E-21		0.0450329	[0.036-0.054] unit decrease	NR [11722792] (imputed)	N
1115	chr4	69491283	69491284	rs4860987	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Docosahexaenoic acid levels	115,006 European ancestry individuals	NA	4q13.2		rs4860987-A	0.741388	6E-16		0.0382907	[0.029-0.048] unit decrease	NR [11722792] (imputed)	N
1115	chr4	69491283	69491284	rs4860987	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	4q13.2		rs4860987-T	NR	7E-37		0.0355	[0.03-0.041] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
1115	chr4	69491283	69491284	rs4860987	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	4q13.2	TMPRSS11E	rs4860987-A	0.740512	1E-50		0.00404239	[0.0035-0.0046] unit increase	Affymetrix [13995440] (imputed)	N
1115	chr4	69491283	69491284	rs4860987	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	4q13.2	NR	rs4860987-A	0.740467	6E-49		0.0339193	[0.029-0.038] unit decrease	Affymetrix [15000001]	N
1115	chr4	69491283	69491284	rs4860987	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	4q13.2	NR	rs4860987-T	0.260111	1E-105		0.0291524	[0.026-0.032] unit increase	Affymetrix [16582621] (imputed)	N
1115	chr4	69491283	69491284	rs4860987	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	4q13.2	NR	rs4860987-T	0.260111	5E-96		0.0297008	[0.027-0.033] unit increase	Affymetrix [16582614] (imputed)	N
1115	chr4	69491455	69491456	rs34707604	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	4q13.2		rs34707604-T	0.741488	7E-10		0.0300765	[0.021-0.04] unit increase	NR [11722792] (imputed)	N
1115	chr4	69497275	69497276	rs34187424	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	4q13.2	NR	rs34187424-C	NR	3E-11		0.0166	[0.012-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
1115	chr4	69497275	69497276	rs34187424	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	4q13.2	NR	rs34187424-C	NR	2E-12		0.0176	[0.013-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
1115	chr4	69509986	69509987	rs139487692	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	4q13.2	NR	rs139487692-T	0.009776000000000007	1E-8		0.0356806	[0.025-0.047] unit increase	Affymetrix [16582909] (imputed)	N
1115	chr4	69509986	69509987	rs139487692	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	4q13.2	NR	rs139487692-T	0.009776000000000007	1E-6		0.0342769	[0.022-0.047] unit increase	Affymetrix [16582965] (imputed)	N
1115	chr4	69532127	69532128	rs1531022	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	4q13.2	UGT2B15	rs1531022-G	0.411427	7E-25	(vanillylmandelate (VMA))	0.221	[0.18-0.26] unit increase	Illumina [13039987] (imputed)	N
1115	chr4	69532127	69532128	rs1531022	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	4q13.2	UGT2B15	rs1531022-A	0.46	1E-13	(X - 13688)	0.187	[0.14-0.24] unit increase	Illumina [7750367] (imputed)	N
1115	chr4	69533216	69533217	rs1349852	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	4q13.2	UGT2B15	rs1349852-A	0.524632	1E-41		0.00695203	[0.0059-0.008] unit increase	Affymetrix [13995440] (imputed)	N
1115	chr4	69533216	69533217	rs1349852	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	4q13.2	UGT2B15	rs1349852-A	0.524708	6E-9		0.011216	[0.0074-0.015] unit decrease	Affymetrix [NR] (imputed)	N
1115	chr4	69533216	69533217	rs1349852	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	4q13.2	NR	rs1349852-C	0.47546900000000003	5E-69		0.0193075	[0.017-0.022] unit increase	Affymetrix [16582621] (imputed)	N
1115	chr4	69533216	69533217	rs1349852	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	4q13.2	NR	rs1349852-C	0.47546900000000003	6E-67		0.02037	[0.018-0.023] unit increase	Affymetrix [16582614] (imputed)	N
1115	chr4	69533220	69533221	rs989075	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	4q13.2	UGT2B15	rs989075-A	0.524773	2E-21		0.0188142	[0.015-0.023] unit decrease	Affymetrix [NR] (imputed)	N
1115	chr4	69536083	69536084	rs1902023	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	4q13.2		rs1902023-C	NR	2E-35		0.0241	[0.02-0.028] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
1115	chr4	69536841	69536842	rs1580083	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	4q13.2	UGT2B15	rs1580083-T	0.393342	2E-10		0.015760832	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1115	chr4	69537474	69537475	rs9994887	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	4q13.2	UGT2B15	rs9994887-G	0.475373	3E-10		0.0178915	[0.014-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1115	chr4	69537914	69537915	rs7686914	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	4q13.2	NR	rs7686914-C	0.475402	9E-18		0.0110552	[0.0085-0.0136] unit increase	Affymetrix [16578495] (imputed)	N
1115	chr4	69538179	69538180	rs7696472	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	4q13.2	NR	rs7696472-A	0.475511	2E-39		0.0382386	[0.032-0.044] unit increase	Affymetrix [16577313] (imputed)	N
1115	chr4	69538179	69538180	rs7696472	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	4q13.2	NR	rs7696472-A	0.47507600000000005	8E-58		0.0130025	[0.011-0.015] unit increase	Affymetrix [16582909] (imputed)	N
1115	chr4	69538179	69538180	rs7696472	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	4q13.2	NR	rs7696472-A	0.474738	5E-8		0.00659221	[0.0042-0.009] unit increase	Affymetrix [16585854] (imputed)	N
1115	chr4	69538179	69538180	rs7696472	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	4q13.2	NR	rs7696472-A	0.47507600000000005	7E-48		0.0131911	[0.011-0.015] unit increase	Affymetrix [16582965] (imputed)	N
1115	chr4	69553526	69553527	rs13435134	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Testosterone levels	310,461 European ancestry individuals, 5,453 African ancestry individuals, 6,680 South Asian ancestry individuals	NA	4q13.2	NR	rs13435134-T	NR	4E-9		0.0171	[0.011-0.023] unit increase	Affymetrix [9000000] (imputed)	N
1115	chr4	69553526	69553527	rs13435134	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	4q13.2	NR	rs13435134-T	NR	6E-17		0.0242	[0.019-0.03] unit increase	Affymetrix [9000000] (imputed)	N
1115	chr4	69553526	69553527	rs13435134	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	4q13.2	NR	rs13435134-T	NR	3E-11		0.0183	[0.013-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
1115	chr4	69553526	69553527	rs13435134	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	4q13.2	NR	rs13435134-T	NR	2E-9		0.0173	[0.012-0.023] unit increase	Affymetrix [9000000] (imputed)	N
1115	chr4	69588051	69588052	rs293435	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium HDL	115,082 European ancestry individuals	NA	4q13.2		rs293435-C	0.711487	8E-9		0.0259218	[0.017-0.035] unit decrease	NR [11722792] (imputed)	N
1115	chr4	69588051	69588052	rs293435	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in HDL	115,082 European ancestry individuals	NA	4q13.2		rs293435-C	0.711487	3E-8		0.0247398	[0.016-0.034] unit decrease	NR [11722792] (imputed)	N
1115	chr4	69591781	69591782	rs293428	22829776	Coviello AD	2012-07-19	PLoS Genet	A genome-wide association meta-analysis of circulating sex hormone-binding globulin reveals multiple Loci implicated in sex steroid hormone regulation.	Sex hormone-binding globulin levels	21,791 European ancestry individuals	8,175 European ancestry individuals	4q13.2	UGT2B15	rs293428-A	0.69	6E-6	(Men + Women)	0.019	[0.011-0.027] umol/L decrease	Affymetrix, Illumina [2543887] (imputed)	N
1115	chr4	69591781	69591782	rs293428	22829776	Coviello AD	2012-07-19	PLoS Genet	A genome-wide association meta-analysis of circulating sex hormone-binding globulin reveals multiple Loci implicated in sex steroid hormone regulation.	Sex hormone-binding globulin levels	21,791 European ancestry individuals	8,175 European ancestry individuals	4q13.2	UGT2B15	rs293428-A	0.69	3E-8	(Men)	0.029	[0.019-0.039] umol/L decrease	Affymetrix, Illumina [2543887] (imputed)	N
1115	chr4	69592056	69592057	rs293427	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	4q13.2		rs293427-T	NR	1E-14		0.0165	[0.012-0.021] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
1115	chr4	69598005	69598006	rs111527163	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	4q13.2	intergenic	rs111527163-T	0.0836	4E-11		0.04238102	[0.03-0.055] unit increase	Affymetrix [~ 2500000] (imputed)	N
1116	chr4	69599530	69599531	rs176813	30289880	Qi G	2018-10-05	PLoS Genet	Heritability informed power optimization (HIPO) leads to enhanced detection of genetic associations across multiple traits.	Lipid traits (pleiotropy) (HIPO component 2)	188,577 European ancestry individuals	NA	4q13.2	UGT2B15	rs176813-?	NR	8E-9				NR [1800000]	N
1116	chr4	69604490	69604491	rs72651930	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 7, width of cartilaginous portion of nose)	2,187 European ancestry individuals	NA	4q13.2	NR	rs72651930-A	0.1302	7E-7		0.2227	[0.14-0.31] unit decrease	Illumina [10677593] (imputed)	N
1116	chr4	69618240	69618241	rs429930	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls, 33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	4q13.2		rs429930-T	NR	4E-9		0.0417	[0.028-0.056] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1116	chr4	69640533	69640534	rs188482600	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	4q13.2	NR	rs188482600-?	NR	7E-11	(CXCL10)	2.09223	[1.46-2.72] unit increase	Illumina [11901634] (imputed)	N
1116	chr4	69659737	69659738	rs10023464	32555152	Smith RL	2020-06-19	Transl Psychiatry	Identification of a novel polymorphism associated with reduced clozapine concentration in schizophrenia patients-a genome-wide association study adjusting for smoking habits.	Clozapine-to-N-desmethylclozapine metabolic ratio in schizophrenia	3,473 European ancestry individuals	NA	4q13.2	CTD-2005D20.1	rs10023464-T	NR	2E-91		0.177	[0.16-0.19] unit decrease	Illumina [up to 6200000] (imputed)	N
1116	chr4	69659737	69659738	rs10023464	30922102	Pardinas AF	2019-03-29	Am J Psychiatry	Pharmacogenomic Variants and Drug Interactions Identified Through the Genetic Analysis of Clozapine Metabolism.	Plasma clozapine-norclozapine ratio in treatment-resistant schizophrenia	2,989 European ancestry individuals	NA	4q13.2	UGT2B4, UGT2B7, UGT2A3, UGT2B10, UGT2B11, UGT2B15, UGT2B28	rs10023464-T	0.101	9E-66				Illumina [~ 7500000] (imputed)	N
1116	chr4	69659737	69659738	rs10023464	29631575	Obeidat M	2018-04-10	Respir Res	The genetics of smoking in individuals with chronic obstructive pulmonary disease.	Cotinine levels in smokers with chronic obstructive pulmonary disease	4,024 European ancestry individuals	NA	4q13.2	UGT2B10	rs10023464-?	NR	1E-11		0.25	[0.17-0.33] unit increase	Illumina [7807992] (imputed)	N
1116	chr4	69669182	69669183	rs10000284	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	4q13.2		rs10000284-C	NR	4E-15		0.0263	[0.02-0.033] unit decrease	Affymetrix, Illumina [20535842] (imputed)	N
1116	chr4	69669182	69669183	rs10000284	32555152	Smith RL	2020-06-19	Transl Psychiatry	Identification of a novel polymorphism associated with reduced clozapine concentration in schizophrenia patients-a genome-wide association study adjusting for smoking habits.	N-desmethylclozapine concentration in schizophrenia	3,473 European ancestry individuals	NA	4q13.2	RP11-468N14.1	rs10000284-T	NR	4E-20		0.14	[0.11-0.17] unit decrease	Illumina [up to 6200000] (imputed)	N
1116	chr4	69669182	69669183	rs10000284	32157176	Buchwald J	2020-03-10	Mol Psychiatry	Genome-wide association meta-analysis of nicotine metabolism and cigarette consumption measures in smokers of European descent.	Cotinine and 3'-hydroxycotinine levels in current smokers	5,185 European ancestry individuals	NA	4q13.2		rs10000284-C	0.08	7E-22		0.346	[0.28-0.42] unit increase	Illumina [9622178] (imputed)	N
1116	chr4	69680932	69680933	rs294775	32157176	Buchwald J	2020-03-10	Mol Psychiatry	Genome-wide association meta-analysis of nicotine metabolism and cigarette consumption measures in smokers of European descent.	Cotinine levels in current smokers	5,185 European ancestry individuals	NA	4q13.2		rs294775-C	0.078	2E-21		0.354	[0.28-0.43] unit increase	Illumina [9622178] (imputed)	N
1116	chr4	69680941	69680942	rs11725502	30922102	Pardinas AF	2019-03-29	Am J Psychiatry	Pharmacogenomic Variants and Drug Interactions Identified Through the Genetic Analysis of Clozapine Metabolism.	Plasma norclozapine levels in treatment-resistant schizophrenia	2,989 European ancestry individuals	NA	4q13.2	UGT2B10	rs11725502-T	0.0983607	5E-15			decrease	Illumina [~ 7500000] (imputed)	N
1116	chr4	69681935	69681936	rs61750900	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	4q13.2	NR	rs61750900-T	NR	3E-13		0.0293	[0.021-0.037] unit decrease	Affymetrix [9000000] (imputed)	N
1116	chr4	69681935	69681936	rs61750900	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	4q13.2	NR	rs61750900-T	NR	3E-9		0.0259	[0.017-0.034] unit decrease	Affymetrix [9000000] (imputed)	N
1116	chr4	69682470	69682471	rs294777	25293881	Patel YM	2014-10-07	Cancer Epidemiol Biomarkers Prev	The contribution of common genetic variation to nicotine and cotinine glucuronidation in multiple ethnic/racial populations.	Cotinine glucuronidation	437 European ancestry current smoker individuals, 364 African American current smoker individuals, 453 Latino current smoker individuals, 674 Japanese ancestry current smoker individuals, 311 Native Hawaiian ancestry current smoker individuals	NA	4q13.2	UGT2B10	rs294777-A	NR	6E-48		0.1905	[NR] unit increase	Illumina [11892802] (imputed)	N
1116	chr4	69682554	69682555	rs294778	32157176	Buchwald J	2020-03-10	Mol Psychiatry	Genome-wide association meta-analysis of nicotine metabolism and cigarette consumption measures in smokers of European descent.	Smoking intensity (cotinine levels/cigarettes per day)	4,772 European ancestry individuals	NA	4q13.2		rs294778-G	0.079	2E-15		0.303	[0.23-0.38] unit increase	Illumina [9622178] (imputed)	N
1116	chr4	69698254	69698255	rs112901040	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	4q13.2	UGT2B10, RP11-468N14.3	rs112901040-T	0.120781	4E-23		0.033799134	[0.027-0.04] unit increase	Affymetrix [93095623] (imputed)	N
1116	chr4	69720310	69720311	rs1458247	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	4q13.2		rs1458247-?	NR	4E-23				NR [~ 8900000] (imputed)	N
1117	chr4	69733033	69733034	rs76177150	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	4q13.2		rs76177150-A	NR	4E-16		0.0231	[0.018-0.029] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
1117	chr4	69733033	69733034	rs76177150	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	4q13.2		rs76177150-A	0.120131	1E-11		0.0289546	[0.023-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
1117	chr4	69733033	69733034	rs76177150	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	4q13.2		rs76177150-A	0.120126	4E-13		0.025261898	[0.018-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
1117	chr4	69733033	69733034	rs76177150	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	4q13.2		rs76177150-?	NR	4E-24				NR [~ 8900000] (imputed)	N
1117	chr4	69734158	69734159	rs77829136	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q13.2	NR	rs77829136-A	0.134185	3E-25				Affymetrix, Illumina [20825802] (imputed)	N
1117	chr4	69736659	69736660	rs112421097	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	4q13.2	NR	rs112421097-G	NR	2E-8		0.0437953	[0.028-0.059] unit increase	Affymetrix [16832071] (imputed)	N
1117	chr4	69737035	69737036	rs11726946	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q13.2	NR	rs11726946-A	0.877747	5E-25				Affymetrix, Illumina [22063850] (imputed)	N
1117	chr4	69737035	69737036	rs11726946	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	4q13.2	NR	rs11726946-A	0.879385	2E-26		0.030957	[0.025-0.037] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
1117	chr4	69737035	69737036	rs11726946	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q13.2	NR	rs11726946-G	0.13621	5E-23				Affymetrix, Illumina [24246363] (imputed)	N
1117	chr4	69737035	69737036	rs11726946	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	4q13.2	NR	rs11726946-G	0.120338	2E-24		0.028686	[0.023-0.034] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1117	chr4	69737035	69737036	rs11726946	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	4q13.2	NR	rs11726946-G	0.120123	1E-25		0.031184	[0.025-0.037] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
1117	chr4	69751684	69751685	rs10001501	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	4q13.2	NR	rs10001501-G	NR	1E-15		0.0258	[0.02-0.032] unit increase	Affymetrix [9000000] (imputed)	N
1117	chr4	69769285	69769286	rs1989329	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 7, width of cartilaginous portion of nose)	2,187 European ancestry individuals	NA	4q13.2	NR	rs1989329-T	0.1323	3E-7		0.2306	[0.14-0.32] unit decrease	Illumina [10677593] (imputed)	N
1117	chr4	69771835	69771836	rs12650679	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	4q13.2		rs12650679-A	0.871	5E-11		0.11	[0.08-0.14] % increase	Affymetrix [NR] (imputed)	N
1117	chr4	69807217	69807218	rs1159714	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	4q13.2	NR	rs1159714-C	NR	2E-10		0.0239	[0.017-0.031] unit decrease	Affymetrix [9000000] (imputed)	N
1117	chr4	69825367	69825368	rs190537336	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	4q13.2	NR	rs190537336-?	NR	7E-11	(CXCL10)	2.07349	[1.45-2.7] unit increase	Illumina [11901634] (imputed)	N
1117	chr4	69830541	69830542	rs3966085	29432556	Brooke RJ	2018-02-08	J Natl Cancer Inst	A High-risk Haplotype for Premature Menopause in Childhood Cancer Survivors Exposed to Gonadotoxic Therapy.	Premature menopause in childhood cancer survivors	27 European ancestry cases, 3 African ancestry cases, 658 European ancestry controls, 111 African ancestry controls	NA	4q13.2	UGT2A3	rs3966085-G	NR	6E-6		28.89	[3.10-269.69]	Affymetrix [10993255] (imputed)	N
1118	chr4	69886150	69886151	rs11730623	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Hemoglobin	108,769 Japanese ancestry individuals	NA	4q13.2	UGT2B10	rs11730623-?	NR	2E-8		0.02907	[0.019-0.039] unit increase novel	Illumina [6108953] (imputed)	N
1118	chr4	69886150	69886151	rs11730623	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Hematocrit	108,757 Japanese ancestry individuals	NA	4q13.2	UGT2B10	rs11730623-?	NR	4E-8		0.02841	[0.018-0.039] unit increase novel	Illumina [6108953] (imputed)	N
1118	chr4	69926405	69926406	rs79325920	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	4q13.2	NR	rs79325920-G	NR	1E-9		0.0267	[0.018-0.035] unit decrease	Affymetrix [9000000] (imputed)	N
1118	chr4	69945771	69945771	rs55644315	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	4q13.2	NR	rs55644315-G	0.551285	3E-16		0.0162315	[0.012-0.02] unit increase	Affymetrix [16583148] (imputed)	N
1118	chr4	69945775	69945775	rs397745765	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	4q13.2		rs397745765-GA	NR	1E-10		0.0122	[0.0085-0.0159] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1118	chr4	69945775	69945775	rs397745765	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	4q13.2		rs397745765-GA	NR	2E-10		0.0117	[0.0082-0.0152] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
1118	chr4	69946003	69946004	rs4632729	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	4q13.2	NR	rs4632729-A	0.54505	2E-30		0.0148349	[0.012-0.017] unit increase	Affymetrix [16578495] (imputed)	N
1118	chr4	69946003	69946004	rs4632729	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	4q13.2	NR	rs4632729-A	0.54541	2E-22		0.02758	[0.022-0.033] unit increase	Affymetrix [16580851] (imputed)	N
1118	chr4	69946651	69946652	rs11249526	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	177,082 European ancestry individuals	NA	4q13.2		rs11249526-T	0.46	1E-25		0.0345	[0.028-0.041] unit increase	NR [8806780] (imputed)	N
1118	chr4	69946651	69946652	rs11249526	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	162,591 European ancestry individuals	NA	4q13.2		rs11249526-T	0.46	2E-21		0.0324	[0.026-0.039] unit increase	NR [8806780] (imputed)	N
1118	chr4	69946651	69946652	rs11249526	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D level variance	318,851 European ancestry individuals	NA	4q13.2		rs11249526-T	0.46	9E-11		0.0163	[0.011-0.021] unit decrease	NR [6098063] (imputed)	N
1118	chr4	69947595	69947596	rs7699711	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	4q13.2	NR	rs7699711-T	0.454848	7E-49		0.02864	[0.025-0.032] unit decrease	Affymetrix [16668957] (imputed)	N
1118	chr4	69952309	69952310	rs13135225	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Enterococcus abundance in stool	5,959 Finnish ancestry individuals	NA	4q13.2		rs13135225-A	0.0374196	5E-8		0.076048	[0.049-0.103] unit increase	Illumina [7980478] (imputed)	N
1118	chr4	69953079	69953080	rs6422323	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	4q13.2		rs6422323-?	NR	5E-51		0.03053	[0.027-0.035] unit decrease	NR [6912294] (imputed)	N
1118	chr4	69953102	69953103	rs6422324	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	4q13.2		rs6422324-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1118	chr4	69961911	69961912	rs7662029	34255042	Schmitz D	2021-07-13	J Clin Endocrinol Metab	Genome-Wide Association Study of Estradiol Levels, and the Causal Effect of Estradiol on Bone Mineral Density.	Estradiol levels	13,367 European ancestry male cases, 134,323 European ancestry male controls	NA	4q13.2	UGT2B7	rs7662029-G	0.454	4E-18		0.893	[0.871-0.916]	Affymetrix [7871717] (imputed)	N
1118	chr4	69962374	69962375	rs61361928	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	4q13.2	NR	rs61361928-C	NR	7E-10		0.0997	[0.068-0.131] unit decrease	Affymetrix [9000000] (imputed)	N
1118	chr4	69962374	69962375	rs61361928	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	4q13.2	NR	rs61361928-C	NR	4E-9		0.0954	[0.064-0.127] unit decrease	Affymetrix [9000000] (imputed)	N
1118	chr4	69962374	69962375	rs61361928	25935875	Varenhorst C	2015-05-02	Eur Heart J	Effect of genetic variations on ticagrelor plasma levels and clinical outcomes.	AR-C124910XX levels in individuals with acute coronary syndromes treated with ticagrelor	1,794 European ancestry cases, 18 African and Asian ancestry cases	1,922 European ancestry cases, 19 African and Asian ancestry cases	4q13.2	UGT2B7	rs61361928-T	0.005	8E-14		0.385	[0.29-0.48] unit increase	Illumina [10962468] (imputed)	N
1118	chr4	69972462	69972463	rs4356975	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	4q13.2	UGT2B7	rs4356975-A	0.295	2E-7	(Gestational age )	0.07	[NR] wk increase	Illumina [899892]	N
1118	chr4	69972778	69972779	rs4257713	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	4q13.2		rs4257713-A	0.227274755	7E-9		0.06469781	[0.043-0.087] unit decrease	Illumina [13429980] (imputed)	N
1118	chr4	69973666	69973667	rs4588522	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Gamma glutamyl transferase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	4q13.2	UGT2B7	rs4588522-?		5E-9		0.0249	[0.016-0.033] unit decrease	Illumina [31500000] (imputed)	N
1118	chr4	69975441	69975443	rs34095769	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Diastolic blood pressure change trajectory	5,304 African American individuals, 13,137 European ancestry individuals, 1,317 Hispanic individuals, 1,439 admixed individuals, 703 Chinese ancestry individuals	6,500 African American individuals, 2,451 European ancestry individuals, 2,869 Hispanic individuals	4q13.2	NR	rs34095769-T	0.9001	1E-6		0.0885	[0.053-0.124] mmHg decrease	Affymetrix, Illumina [NR] (imputed)	N
1118	chr4	69978900	69978901	rs6600893	34308111	Amin HA	2021-01-07	BMJ Nutr Prev Health	No evidence that vitamin D is able to prevent or affect the severity of COVID-19 in individuals with European ancestry: a Mendelian randomisation study of open data.	Vitamin D insufficiency	35,079 European ancestry cases, 140,898 European ancestry controls	NA	4q13.2		rs6600893-C	0.452	5E-15		0.067	[0.049-0.085] unit increase	Affymetrix [812428]	N
1118	chr4	69979482	69979483	rs7666195	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	4q13.2	UGT2B7	rs7666195-C	0.47	2E-14	(glucuronide of C12H22O4 (2))	0.31	[0.23-0.39] unit increase	Illumina [7750367] (imputed)	N
1118	chr4	69988377	69988378	rs4274916	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	4q13.2	NR	rs4274916-C	0.54198	3E-9		0.0174588	[0.011-0.023] unit increase	Affymetrix [16577424] (imputed)	N
1119	chr4	69998378	69998379	rs11931182	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	4q13.2	UGT2B7	rs11931182-T	0.50368	3E-12		0.0016474	[0.0012-0.0021] unit increase	Affymetrix [13995440] (imputed)	N
1119	chr4	70008399	70008400	rs1841041	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	4q13.2	UGT2A3	rs1841041-G	0.117586584306093	6E-6		0.0037622	[NR] unit increase	Affymetrix [> 30000000] (imputed)	N
1119	chr4	70019332	70019333	rs13134261	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	4q13.2	NR	rs13134261-C	NR	1E-9		0.0394	[0.027-0.052] unit increase	Affymetrix [9000000] (imputed)	N
1119	chr4	70030272	70030273	rs7668556	30922102	Pardinas AF	2019-03-29	Am J Psychiatry	Pharmacogenomic Variants and Drug Interactions Identified Through the Genetic Analysis of Clozapine Metabolism.	Plasma clozapine-norclozapine ratio in treatment-resistant schizophrenia	2,989 European ancestry individuals	NA	4q13.2	UGT2A3, UGT2B7, UGT2B11, UGT2B28	rs7668556-A	0.466	4E-13				Illumina [~ 7500000] (imputed)	N
1119	chr4	70047913	70047914	rs112243525	29346644	Yan Q	2018-01-15	Hum Mol Genet	Genome-wide Analysis of Disease Progression in Age-related Macular Degeneration.	Disease progression in age-related macular degeneration (adjusted for baseline)	1,105 progressed eyes and 3,912 non-progressed eyes from 2,721 European ancestry individuals	NA	4q13.2	UGT2B7, UGT2B11	rs112243525-T	0.2	3E-6		1.38		Illumina [8974355] (imputed)	N
1119	chr4	70076993	70076994	rs79344706	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Testosterone levels	310,461 European ancestry individuals, 5,453 African ancestry individuals, 6,680 South Asian ancestry individuals	NA	4q13.2	NR	rs79344706-A	NR	2E-9		0.0356	[0.024-0.047] unit decrease	Affymetrix [9000000] (imputed)	N
1120	chr4	70144758	70144759	rs7657406	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	4q13.2	UGT2B11	rs7657406-?	NR	5E-6	(PC 36:4)	0.15828158	[0.09-0.226] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1120	chr4	70157712	70157713	rs117869235	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Lean body mass	3,399 whole genome sequenced individuals, 11,801 European ancestry individuals	10,676 European ancestry individuals	4q13.2	UGT2B28	rs117869235-A	0.9965	3E-6		0.583	[0.34-0.83] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1120	chr4	70195392	70195393	rs4694722	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	4q13.2	UGT2B11	rs4694722-?	NR	9E-7	(SM 22:1)	0.17820685	[0.11-0.25] unit increase	Affymetrix [at least 2500000] (imputed)	N
1120	chr4	70195392	70195393	rs4694722	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	4q13.2	UGT2B11	rs4694722-?	NR	4E-6	(PC 38:5)	0.16514502	[0.095-0.236] unit increase	Affymetrix [at least 2500000] (imputed)	N
1121	chr4	70264401	70264402	rs190609436	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	4q13.2	NR	rs190609436-?	NR	1E-10	(CXCL10)	3.10792	[2.17-4.05] unit increase	Illumina [11901634] (imputed)	N
1121	chr4	70276723	70276724	rs2736452	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	4q13.3	UGT2B28	rs2736452-?	NR	6E-6	(PC 36:4)	0.197091	[0.11-0.28] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1121	chr4	70281413	70281414	rs7665631	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	4q13.3	NR	rs7665631-C	NR	2E-16		0.0289	[0.022-0.036] unit decrease	Affymetrix [9000000] (imputed)	N
1121	chr4	70301451	70301452	rs62308489	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	4q13.3		rs62308489-?	NR	7E-21		0.0262407	[0.021-0.032] unit decrease	NR [6912294] (imputed)	N
1121	chr4	70326655	70326656	rs4694744	27236921	Rautanen A	2016-06-02	Am J Hum Genet	Polymorphism in a lincRNA Associates with a Doubled Risk of Pneumococcal Bacteremia in Kenyan Children.	Bacteremia	1,536 African ancestry cases, 2,677 African ancestry controls	434 African ancestry cases, 1,336 African ancestry controls	4q13.3	UGT2B4	rs4694744-?	NR	7E-7		1.5873016	[NR]	Affymetrix [up to 10996499] (imputed)	N
1122	chr4	70387481	70387482	rs115155371	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	4q13.3	NR	rs115155371-A	NR	2E-9		0.0365	[0.025-0.048] unit increase	Affymetrix [9000000] (imputed)	N
1122	chr4	70442164	70442165	rs4286604	31469419	Manichaikul A	2019-08-30	Int J Cancer	Identification of novel epithelial ovarian cancer loci in Women of African Ancestry.	Epithelial ovarian cancer	755 African ancestry cases, 1,235 African ancestry controls	NA	4q13.3	UGT2A2	rs4286604-G	0.732	9E-7		1.4492754	[1.25-1.69]	Illumina [12486624] (imputed)	N
1122	chr4	70457020	70457021	rs10017134	31001917	Grant DJ	2019-04-18	Cancer Med	Evaluation of vitamin D biosynthesis and pathway target genes reveals UGT2A1/2 and EGFR polymorphisms associated with epithelial ovarian cancer in African American Women.	Epithelial ovarian cancer	755 African American cases, 1,235 African American controls	NA	4q13.3	UGT2A1/2	rs10017134-C	0.73	1E-6		1.4	[1.2-1.7]	Illumina [471780]	N
1122	chr4	70466279	70466280	rs10028954	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	4q13.3	NR	rs10028954-C	0.5850839999999999	3E-9		0.0187935	[0.013-0.025] unit increase	Affymetrix [16577313] (imputed)	N
1122	chr4	70466279	70466280	rs10028954	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	4q13.3	NR	rs10028954-?	NR	4E-6		672.4794	NR unit increase	Illumina [2379855]	N
1122	chr4	70510790	70510791	rs184330259	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	225,112 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	445,360 individuals	4q13.3	UGT2A1	rs184330259-G	4.0E-4	3E-56		27.7987	[24.35-31.25] mmHg increase	Affymetrix [NR] (imputed)	N
1123	chr4	70566582	70566583	rs10794695	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Uterine fibroids	21,024 European ancestry cases, 237,694 European ancestry controls, 14,475 East Asian ancestry cases, 65,733 East Asian ancestry controls	NA	4q13.3		rs10794695-A	NR	1E-21		0.084	[0.067-0.101] unit increase	Affymetrix, Illumina [25795146] (imputed)	N
1123	chr4	70599072	70599073	rs1847366	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	48,454 European ancestry individuals	NA	4q13.3	SULT1B1	rs1847366-C	0.4313	3E-6		0.0299	[0.017-0.042] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1123	chr4	70600737	70600738	rs12640488	31649266	Gallagher CS	2019-10-24	Nat Commun	Genome-wide association and epidemiological analyses reveal common genetic origins between uterine leiomyomata and endometriosis.	Uterine fibroids	20,406 European ancestry cases, 223,918 European ancestry controls	15,068 European ancestry cases, 43,587 European ancestry controls	4q13.3	SULT1B1	rs12640488-A	0.52	4E-14		1.06	[1.05-1.08]	Affymetrix, Illumina [8662096] (imputed)	N
1123	chr4	70608871	70608872	rs1604744	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Uterine fibroids	14,475 East Asian ancestry cases, 65,733 East Asian ancestry controls	NA	4q13.3		rs1604744-T	0.333256015	5E-11		0.09502463	[0.067-0.123] unit increase	Illumina [13401454] (imputed)	N
1123	chr4	70608871	70608872	rs1604744	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Uterine fibroids (MTAG)	5,236 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	4q13.3	Intergenic	rs1604744-?		7E-6		1.03	[1.02-1.04]	Illumina [7645193] (imputed)	N
1123	chr4	70608871	70608872	rs1604744	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Uterine fibroids	5,236 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	4q13.3	Intergenic	rs1604744-?		7E-6		1.09	[1.05-1.13]	Illumina [7645193] (imputed)	N
1123	chr4	70624661	70624662	rs77114337	28440896	Yin X	2017-04-25	Am J Med Genet B Neuropsychiatr Genet	Genome-wide meta-analysis identifies a novel susceptibility signal at CACNA2D3 for nicotine dependence.	Nicotine dependence	7,297 European ancestry cases, 5,577 European ancestry controls, 918 European ancestry whole genome sequenced cases, 921 European ancestry whole genome sequenced controls, African American cases, 1,500 African American controls	NA	4q13.3	SULT1B1	rs77114337-T		4E-6	(AA)	0.25	[0.15-0.35] unit increase	Illumina [at least 3251541] (imputed)	N
1123	chr4	70634440	70634441	rs2202282	30194396	Rafnar T	2018-09-07	Nat Commun	Variants associating with uterine leiomyoma highlight genetic background shared by various cancers and hormone-related traits.	Uterine fibroids	16,595 European ancestry cases, 523,330 European ancestry controls	NA	4q13.3	SULT1B1	rs2202282-T	0.48514	6E-13		1.09	[1.06-1.12]	Affymetrix, Illumina [43421991] (imputed)	N
1124	chr4	70724269	70724270	rs3775770	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	4q13.3	SULT1E1	rs3775770-C	0.70537	2E-10		0.0128337	[0.0089-0.0168] unit increase	NR [13737936] (imputed)	N
1124	chr4	70724269	70724270	rs3775770	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	4q13.3		rs3775770-?	NR	4E-10				NR [~ 8900000] (imputed)	N
1124	chr4	70724269	70724270	rs3775770	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	4q13.3		rs3775770-?	NR	2E-9		0.0127911	[0.0083-0.0173] unit increase	Affymetrix [20259828] (imputed)	N
1124	chr4	70725455	70725456	rs1881668	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	4q13.3	NR	rs1881668-G	0.269216	1E-8		0.00540359	[0.0036-0.0072] unit increase	Affymetrix [16582909] (imputed)	N
1124	chr4	70725455	70725456	rs1881668	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	4q13.3	NR	rs1881668-G	0.269216	2E-6		0.00511189	[0.0031-0.0072] unit increase	Affymetrix [16582965] (imputed)	N
1126	chr4	70923660	70923661	rs200028958	30361487	Yan Q	2018-10-25	Mol Psychiatry	Genome-wide association study of brain amyloid deposition as measured by Pittsburgh Compound-B (PiB)-PET imaging.	Cerebral amyloid deposition (PET imaging)	983 European ancestry individuals	NR	4q13.3	HTN1	rs200028958-A	0.11	6E-6		0.1	[NR] unit increase	Illumina [at least 7000000] (imputed)	N
1126	chr4	71008364	71008365	rs115257454	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental extreme longevity (95 years and older)	1,339 middle-aged British cases, 40,934 middle-aged British controls	NA	4q13.3	NR	rs115257454-?	NR	8E-6		0.0137	[0.0077-0.0197] unit decrease	Affymetrix [9658292] (imputed)	N
1127	chr4	71121956	71121957	rs139884001	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	4q13.3	NR	rs139884001-?	NR	1E-13	(CXCL10)	1.58975	[1.17-2.01] unit increase	Illumina [11901634] (imputed)	N
1128	chr4	71183978	71183979	rs17714883	25839716	Ng E	2015-04-02	Environ Res	Genome-wide association study of plasma levels of polychlorinated biphenyls disclose an association with the CYP2B6 gene in a population-based sample.	Polychlorinated biphenyl levels	922 European ancestry individuals	NA	4q13.3	NR	rs17714883-?		1E-7	(PCB189)	1.46	[0.93-1.99] unit increase	Illumina [8736858] (imputed)	N
1128	chr4	71269822	71269823	rs151247099	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	4q13.3	NR	rs151247099-?	NR	1E-13	(CXCL10)	1.58464	[1.17-2] unit increase	Illumina [11901634] (imputed)	N
1129	chr4	71329489	71329490	rs1109501	21529783	Heath AC	2011-04-27	Biol Psychiatry	A quantitative-trait genome-wide association study of alcoholism risk in the community: findings and implications.	Alcoholism (heaviness of drinking)	2,062 European ancestry alcohol dependence cases, 6,692 European ancestry controls	3,393 European ancestry individuals	4q13.3	intergenic	rs1109501-G	0.24	5E-6		0.1	[NR] unit increase	Illumina [~ 300000]	N
1129	chr4	71358775	71358776	rs191449639	31537649	Salem RM	2019-09-19	J Am Soc Nephrol	Genome-Wide Association Study of Diabetic Kidney Disease Highlights Biology Involved in Glomerular Basement Membrane Collagen.	Diabetic nephropathy in type 1 diabetes	4,948 European ancestry cases, 12,076 European ancestry controls	NA	4q13.3	MUC7	rs191449639-A	0.005	1E-8		32.42	[NR]	Illumina [up to 49000000] (imputed)	N
1129	chr4	71372579	71372580	rs17838975	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	4q13.3	NR	rs17838975-?	NR	3E-6				Affymetrix [NR]	N
1130	chr4	71488847	71488848	rs28524990	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Coronary artery disease in hypertension	816 Korean ancestry cases, 15,488 Korean ancestry controls	NA	4q13.3		rs28524990-G	0.4708	2E-6		1.278	[1.155-1.413]	Affymetrix [7975321] (imputed)	N
1130	chr4	71488847	71488848	rs28524990	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Cardio-cerebrovascular disease in hypertension	1,185 Korean ancestry cases, 15,117 Korean ancestry controls	NA	4q13.3		rs28524990-G	0.4708	1E-6		1.232	[1.132-1.34]	Affymetrix [7975321] (imputed)	N
1130	chr4	71511507	71511508	rs115766831	31752434	Costa-Urrutia P	2019-11-19	Genes (Basel)	Genome-Wide Association Study of Body Mass Index and Body Fat in Mexican-Mestizo Children.	Body fat percentage	828 Mexican-Mestizo ancestry children	NA	4q13.3	ENAM	rs115766831-A	0.014	5E-8		0.1	NR unit increase	Affymetrix [~ 2500000] (imputed)	N
1130	chr4	71552397	71552398	rs16845383	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	4q13.3	UTP3	rs16845383-?	NR	8E-10	(Alb)	0.052954298	NR unit decrease	Illumina [609262]	N
1130	chr4	71554973	71554974	rs111485612	29093273	Almgren P	2017-11-02	JCI Insight	Genetic determinants of circulating GIP and GLP-1 concentrations.	Glucagon levels in response to oral glucose tolerance test (120 minutes)	3,344 Swedish ancestry individuals	4,905 Finnish ancestry individuals	4q13.3	UTP3	rs111485612-T	0.004	7E-6		0.159	[0.09-0.228] unit increase	Illumina [at least 81396]	N
1131	chr4	71669617	71669619	rs144431416	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental extreme longevity (95 years and older)	1,339 middle-aged British cases, 40,934 middle-aged British controls	NA	4q13.3	NR	rs144431416-?	NR	2E-6		0.01657	[0.0097-0.0235] unit decrease	Affymetrix [9658292] (imputed)	N
1132	chr4	71704995	71704996	rs115486640	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	4q13.3	NR	rs115486640-C	0.982198	7E-11		0.046482	[0.033-0.06] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
1132	chr4	71735966	71735967	rs6853272	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	4q13.3		rs6853272-T	NR	4E-12		0.0718	[0.052-0.092] unit decrease	Affymetrix, Illumina [25845091] (imputed)	N
1132	chr4	71745815	71745816	rs13129612	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	4q13.3		rs13129612-T	0.791051481	1E-9		0.9402179	[0.921680636-0.959127986]	Illumina [8919992] (imputed)	N
1132	chr4	71748244	71748245	rs12649012	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	4q13.3	GRSF1, MOB1B	rs12649012-G	0.21	3E-9		1.07	1.04-1.09	Illumina [12557761] (imputed)	N
1132	chr4	71751763	71751764	rs11947917	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	4q13.3		rs11947917-C	NR	2E-13		0.0822	[0.06-0.104] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1132	chr4	71753514	71753515	rs2361478	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	46,511 Asian ancestry cases, 169,776 Asian ancestry controls	NA	4q13.3	NR	rs2361478-C	0.7894	3E-9		0.0642	[0.043-0.085] unit decrease	Affymetrix, Illumina [1077427] (imputed)	N
1132	chr4	71753666	71753667	rs72851898	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q13.3	NR	rs72851898-A	0.0236827	1E-12				Affymetrix, Illumina [24246363] (imputed)	N
1132	chr4	71763849	71763850	rs1968819	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	4q13.3		rs1968819-T	0.78758834	9E-13		0.085557714	[0.062-0.109] unit decrease	Illumina [13134967] (imputed)	N
1132	chr4	71774346	71774347	rs13137667	32109421	Li C	2020-02-20	Am J Hum Genet	Genome-Wide Association Analysis in Humans Links Nucleotide Metabolism to Leukocyte Telomere Length.	Leukocyte telomere length	78,592 European ancestry individuals	NA	4q13.3	MOB1B	rs13137667-C	0.96	2E-8		0.077	[0.05-0.104] unit increase	Affymetrix, Illumina, Perlegen [up to 30071938] (imputed)	N
1132	chr4	71778000	71778001	rs57359101	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	4q13.3	MOB1B	rs57359101-A	0.9761124	8E-11		0.0509587	[0.036-0.066] unit decrease	Affymetrix [93095623] (imputed)	N
1132	chr4	71799668	71799669	rs145056736	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	4q13.3	MOB1B	rs145056736-T	0.0179049999999999	6E-10		0.0581441	[0.043-0.073] unit increase	Affymetrix [93095623] (imputed)	N
1132	chr4	71807348	71807349	rs112656744	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	4q13.3	MOB1B	rs112656744-C	0.019308	5E-11		0.053231943	[0.037-0.069] unit increase	Affymetrix [93095623] (imputed)	N
1132	chr4	71807348	71807349	rs112656744	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	4q13.3	NR	rs112656744-C	0.019708	2E-14		0.050102	[0.037-0.063] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
1133	chr4	71835821	71835822	rs7674402	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	4q13.3		rs7674402-A	0.209633642	8E-12		0.07649936	[0.055-0.098] unit increase	Illumina [13429769] (imputed)	N
1133	chr4	71835821	71835822	rs7674402	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	4q13.3	NR	rs7674402-G	0.7719	4E-16		0.0523	[0.04-0.065] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1133	chr4	71836858	71836859	rs72854138	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	4q13.3	NR	rs72854138-C	0.019396	1E-10		0.045176	[0.031-0.059] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
1133	chr4	71844117	71844118	rs28599782	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	4q13.3	MOB1B	rs28599782-A	0.209	5E-16		1.07	[1.05-1.09]	Affymetrix, Illumina [11800000] (imputed)	N
1133	chr4	71850886	71850887	rs114309483	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	4q13.3	NR	rs114309483-?	NR	1E-11	(CXCL10)	1.31578	[0.93-1.7] unit increase	Illumina [11901634] (imputed)	N
1133	chr4	71859679	71859680	rs9997790	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	4q13.3		rs9997790-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1133	chr4	71863609	71863610	rs9993633	31219150	Ekenberg C	2019-06-13	J Infect Dis	Single nucleotide polymorphisms in HLA alleles are associated with HIV-1 viral load in demographically diverse, ART-naive participants from the START trial.	Pre-treatment viral load in HIV-1 infection	1,398 European ancestry individuals, 572 Black individuals, 418 Hispanic individuals, 13 Asian ancestry individuals, 39 individuals	NA	4q13.3	DCK	rs9993633-A	0.109	8E-16		0.3	[0.23-0.38] unit decrease	Affymetrix [339439]	N
1133	chr4	71884639	71884640	rs149116781	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		MOB1B	rs149116781-?	NR	8E-9		2.43667	[NR] unit increase	Affymetrix [NR] (imputed)	N
1133	chr4	71886936	71886937	rs542449847	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Alcohol consumption x traumatic event in childhood (felt hated by family member) interaction	46,394 European ancestry individuals	NA	4q13.3		rs542449847-?	NR	4E-9		3.0218	[2.01-4.03] unit increase	Affymetrix [NR] (imputed)	N
1133	chr4	71894562	71894563	rs12513202	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	4q13.3		rs12513202-T	NR	8E-9		0.0124	[0.0081-0.0167] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
1134	chr4	71963398	71963399	rs138808133	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Bacterial meningitis	842 European ancestry cases, 82,778 European ancestry controls	NA	4q13.3	NR	rs138808133-?	NR	3E-6		3.8017	[1.21-6.39] unit increase	Illumina [at least 560000] (imputed)	N
1134	chr4	71991183	71991184	rs11729023	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	4q13.3	SLC4A4	rs11729023-C	0.878608	1E-18		0.0251348	[0.02-0.031] unit decrease	NR [13737936] (imputed)	N
1134	chr4	71991183	71991184	rs11729023	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	4q13.3		rs11729023-?	NR	2E-19				NR [~ 8900000] (imputed)	N
1134	chr4	71991183	71991184	rs11729023	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	4q13.3		rs11729023-?	NR	8E-19		0.0272477	[0.021-0.034] unit decrease	Affymetrix [20259828] (imputed)	N
1134	chr4	71991183	71991184	rs11729023	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	4q13.3	SLC4A4	rs11729023-C	0.879524	5E-10		0.0317354	[0.022-0.042] unit decrease	NR [17166351] (imputed)	N
1134	chr4	71996874	71996875	rs62302396	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	4q13.3	NR	rs62302396-?	NR	1E-12	(CXCL10)	1.38391	[1-1.77] unit increase	Illumina [11901634] (imputed)	N
1134	chr4	72000799	72000800	rs11729471	34075027	Gonda X	2021-06-01	Transl Psychiatry	Genetic underpinnings of affective temperaments: a pilot GWAS investigation identifies a new genome-wide significant SNP for anxious temperament in ADGRB3 gene.	Hyperthymic temperament	775 European ancestry individuals	NA	4q13.3		rs11729471-A	NR	6E-6		0.04829	unit increase	Illumina [2550710] (imputed)	N
1134	chr4	72016754	72016755	rs7694416	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	4q13.3	NR	rs7694416-A	NR	3E-9		0.0296	[0.02-0.039] unit decrease	Affymetrix [9000000] (imputed)	N
1134	chr4	72022774	72022775	rs17689531	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	4q13.3	NR	rs17689531-?	NR	7E-8				Affymetrix [NR]	N
1134	chr4	72027475	72027476	rs1979537	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota beta diversity (weighted UniFrac distance)	1,068 Japanese ancestry individuals	NA	4q13.3	intergenic	rs1979537-G	0.18	3E-6		5.08	z score increase	Illumina [6380737] (imputed)	N
1134	chr4	72028544	72028545	rs7685921	24315451	van der Valk RJ	2013-12-05	J Allergy Clin Immunol	Fraction of exhaled nitric oxide values in childhood are associated with 17q11.2-q12 and 17q12-q21 variants.	Fractional exhaled nitric oxide (childhood)	5,131 European ancestry individuals, 1,155 Hispanic individuals, 2,572 individuals	NA	4q13.3	SLC4A4	rs7685921-G	0.13	9E-7	(EA)	0.116	[0.069-0.163] unit increase	Affymetrix, Illumina [2253077] (imputed)	N
1134	chr4	72028544	72028545	rs7685921	24315451	van der Valk RJ	2013-12-05	J Allergy Clin Immunol	Fraction of exhaled nitric oxide values in childhood are associated with 17q11.2-q12 and 17q12-q21 variants.	Fractional exhaled nitric oxide (childhood)	5,131 European ancestry individuals, 1,155 Hispanic individuals, 2,572 individuals	NA	4q13.3	SLC4A4	rs7685921-G	0.13	9E-7		0.116	[0.069-0.163] unit increase	Affymetrix, Illumina [2253077] (imputed)	N
1135	chr4	72115860	72115860	rs5859257	34274964	Duijvenboden S	2021-07-19	Hum Mol Genet	Genomic and pleiotropic analyses of resting QT interval identifies novel loci and overlap with atrial electrical disorders.	QT interval	24,495 European ancestry men	NA	4q13.3		rs5859257-T	0.14	6E-6		0.038	[0.02-0.056] unit increase	Affymetrix [NR]	N
1135	chr4	72126888	72126889	rs2579330	23166209	Smith JG	2012-11-19	Circ Cardiovasc Genet	Impact of ancestry and common genetic variants on QT interval in African Americans.	QT interval	13,105 African American individuals	NA	4q13.3	NR	rs2579330-C	0.38	1E-6		1.36	[0.81-1.91] unit increase	Affymetrix, Illumina [2800000] (imputed)	N
1135	chr4	72138215	72138216	rs2363719	24952745	Arking DE	2014-06-22	Nat Genet	Genetic association study of QT interval highlights role for calcium signaling pathways in myocardial repolarization.	QT interval	Up to 70,389 European ancestry individuals, up to 672 Orcadian individuals	Up to 33,316 European ancestry individuals	4q13.3	SLC4A4	rs2363719-A	0.108	8E-10		0.97	[0.66-1.28] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1135	chr4	72177043	72177044	rs529640451	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	4q13.3	NR	rs529640451-C	0.997488	2E-17		0.232802	[0.18-0.29] unit increase	Affymetrix [16668957] (imputed)	N
1136	chr4	72316966	72316967	rs148635969	24951543	Liao J	2014-06-20	Hum Mol Genet	Meta-analysis of genome-wide association studies in multiethnic Asians identifies two loci for age-related nuclear cataract.	Age-related nuclear cataracts	2,369 Malay ancestry individuals, 2,200 Indian ancestry individuals, 2,571 Chinese ancestry individuals	NA	4q13.3	SLC4A4	rs148635969-A	NR	8E-6	(Fixed effect)	0.27	[0.15-0.39] unit increase	Illumina [4736131] (imputed)	N
1136	chr4	72336198	72336199	rs4235092	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	4q13.3	SLC4A4	rs4235092-T	NR	6E-6		1.42547	[0.81-2.04] unit increase	Illumina [13520550] (imputed)	N
1137	chr4	72376112	72376113	rs35245074	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	4q13.3	NR	rs35245074-C	NR	7E-36		0.0455	[0.038-0.053] unit decrease	Affymetrix [9000000] (imputed)	N
1137	chr4	72382470	72382471	rs10031807	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Faecalibacterium)	527 Japanese ancestry men	NA	4q13.3	SLC4A4	rs10031807-A	0.08	7E-6		0.136	[0.077-0.195] unit increase	Illumina [544877]	N
1137	chr4	72418332	72418333	rs115790635	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	4q13.3	NR	rs115790635-C	NR	7E-30		0.0801	[0.066-0.094] unit decrease	Affymetrix [9000000] (imputed)	N
1137	chr4	72421708	72421709	rs16846575	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	4q13.3	NR	rs16846575-C	NR	2E-9		0.0179	[0.012-0.024] unit increase	Affymetrix [9000000] (imputed)	N
1137	chr4	72440916	72440917	rs148189294	28757204	Manousaki D	2017-07-21	Am J Hum Genet	Low-Frequency Synonymous Coding Variation in CYP2R1 Has Large Effects on Vitamin D Levels and Risk of Multiple Sclerosis.	Vitamin D levels	2,619 whole genome sequenced European ancestry individuals, up to 38,213 European ancestry individuals, 1,442 individuals	NA	4q13.3	intergenic	rs148189294-A	0.038	2E-28		0.22	[0.18-0.26] nmol/L decrease	Affymetrix, Illumina [11026511] (imputed)	N
1137	chr4	72455688	72455689	rs35887244	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	4q13.3	NR	rs35887244-C	NR	9E-57		0.0572	[0.05-0.064] unit decrease	Affymetrix [9000000] (imputed)	N
1137	chr4	72461720	72461721	rs17763426	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	4q13.3	NR	rs17763426-G	NR	1E-10		0.0499	[0.035-0.065] unit decrease	Affymetrix [9000000] (imputed)	N
1138	chr4	72486139	72486140	rs528776789	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	4q13.3	NR	rs528776789-A	0.993104	4E-31		0.177644	[0.15-0.21] unit increase	Affymetrix [16668957] (imputed)	N
1138	chr4	72488024	72488025	rs113938679	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	4q13.3	NR	rs113938679-A	0.005873	6E-36		0.183841	[0.16-0.21] unit decrease	Affymetrix [16668957] (imputed)	N
1138	chr4	72488524	72488525	rs564377207	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	4q13.3	NR	rs564377207-G	0.995541	1E-21		0.199047	[0.16-0.24] unit decrease	Affymetrix [16668957] (imputed)	N
1138	chr4	72489718	72489719	rs114372900	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	4q13.3	NR	rs114372900-?	NR	4E-11	(CXCL10)	1.13589	[0.8-1.47] unit increase	Illumina [11901634] (imputed)	N
1138	chr4	72520860	72520861	rs79777036	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	4q13.3	NR	rs79777036-T	NR	3E-11		0.0567	[0.04-0.073] unit increase	Affymetrix [9000000] (imputed)	N
1138	chr4	72524756	72524757	rs16846805	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	4q13.3	NR	rs16846805-?	NR	1E-36				Affymetrix [NR]	N
1138	chr4	72528564	72528565	rs186897112	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	4q13.3	NR	rs186897112-G	0.998019	4E-13		0.247082	[0.18-0.31] unit increase	Affymetrix [16668957] (imputed)	N
1138	chr4	72535504	72535505	rs28564890	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	4q13.3	SLC4A4, GC	rs28564890-?		8E-9				Affymetrix, Illumina [NR] (imputed)	N
1138	chr4	72539856	72539857	rs557657187	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	4q13.3	NR	rs557657187-G	0.99894	6E-16		0.365446	[0.28-0.45] unit increase	Affymetrix [16668957] (imputed)	N
1138	chr4	72545531	72545532	rs10030941	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	4q13.3	NR	rs10030941-G	NR	9E-36		0.0306	[0.026-0.036] unit increase	Affymetrix [9000000] (imputed)	N
1138	chr4	72575016	72575017	rs145432346	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	4q13.3	NR	rs145432346-C	0.825873	7E-286		0.108617	[0.1-0.11] unit increase	Affymetrix [16668957] (imputed)	N
1138	chr4	72578723	72578724	rs1526692	29325163	Hong J	2018-01-09	J Clin Endocrinol Metab	Trans-ethnic Evaluation Identifies Novel Low Frequency Loci Associated with 25-Hydroxyvitamin D Concentrations.	Serum 25-Hydroxyvitamin D levels	8,541 African American individuals, 3,485 Hispanic American individuals, 16,124 European ancestry individuals	NA	4q13.3	GC	rs1526692-A	0.69	3E-10	(Hispanic)	6.3	(z-score) increase	Affymetrix, Illumina [at least 398246] (imputed)	N
1138	chr4	72604298	72604299	rs222054	23213074	Adams LA	2012-12-05	Hepatology	Association between liver-specific gene polymorphisms and their expression levels with nonalcoholic fatty liver disease.	Non-alcoholic fatty liver disease histology (other)	126 European ancestry adolescent cases, 802 European ancestry adolescent controls	NA	4q13.3	GC	rs222054-C	0.301	1E-6		2.54	[0.17-4.91]	Illumina [2078805] (imputed)	N
1138	chr4	72605516	72605517	rs17467825	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q13.3	NR	rs17467825-G	0.283885	1E-38				Affymetrix, Illumina [23114412] (imputed)	N
1138	chr4	72605516	72605517	rs17467825	25208829	Anderson D	2014-09-11	Genes Immun	Genome-wide association study of vitamin D levels in children: replication in the Western Australian Pregnancy Cohort (Raine) study.	Vitamin D levels	645 European ancestry age 6 individuals, 28 age 6 individuals, 1,073 European ancestry age 14 individuals, 67 age 14 individuals	NA	4q13.3	GC	rs17467825-A	0.70	4E-9	(Age 6)	1.07	[1.05-1.09] unit increase	Illumina [2461244] (imputed)	N
1138	chr4	72608114	72608115	rs705117	34014961	Palmer ND	2021-05-20	PLoS One	Genome-wide association study of vitamin D concentrations and bone mineral density in the African American-Diabetes Heart Study.	Serum vitamin D-binding protein levels in type 2 diabetes	697 African American individuals	NA	4q13.3	GC	rs705117-?	NR	5E-43		0.28	[0.24-0.32] ?g/mL decrease	Illumina [3436913] (imputed)	N
1138	chr4	72608114	72608115	rs705117	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	4q13.3		rs705117-?	NR	4E-33		0.0342359	[0.029-0.04] unit increase	NR [6912294] (imputed)	N
1138	chr4	72608114	72608115	rs705117	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	417,580 European ancestry individuals	NA	4q13.3		rs705117-C	0.1477	3E-34		0.034	[0.028-0.04] unit increase	NR [7250403] (imputed)	N
1138	chr4	72608114	72608115	rs705117	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	4q13.3	NR	rs705117-T	0.849453	2E-36		0.034494	[0.029-0.04] unit decrease	Affymetrix [16668957] (imputed)	N
1138	chr4	72608114	72608115	rs705117	24740207	Moy KA	2014-04-16	Am J Clin Nutr	Genome-wide association study of circulating vitamin D-binding protein.	Serum vitamin D-binding protein levels	1,380 European ancestry males	NA	4q13.3	GC	rs705117-G	0.13	5E-91		2026.78	[1829.00-2224.56] nmol/L decrease	Illumina [591610]	N
1138	chr4	72608382	72608383	rs2282679	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	4q13.3		rs2282679-T	0.709	3E-14				Affymetrix [10369434] (imputed)	N
1138	chr4	72608382	72608383	rs2282679	34308111	Amin HA	2021-01-07	BMJ Nutr Prev Health	No evidence that vitamin D is able to prevent or affect the severity of COVID-19 in individuals with European ancestry: a Mendelian randomisation study of open data.	Vitamin D insufficiency	35,079 European ancestry cases, 140,898 European ancestry controls	NA	4q13.3		rs2282679-G	0.274	1E-200		0.429	[0.41-0.45] unit increase	Affymetrix [812428]	N
1138	chr4	72608382	72608383	rs2282679	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	4q13.3	GC	rs2282679-G	0.290766	1E-40		0.032452706	[0.028-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
1138	chr4	72608382	72608383	rs2282679	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	4q13.3	GC	rs2282679-G	0.290768	4E-33		0.029189374	[0.024-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
1138	chr4	72608382	72608383	rs2282679	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	4q13.3	GC	rs2282679-G	0.290857	3E-10		0.01534382	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1138	chr4	72608382	72608383	rs2282679	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q13.3	NR	rs2282679-G	0.282608	4E-10				Affymetrix, Illumina [23472807] (imputed)	N
1138	chr4	72608382	72608383	rs2282679	29343764	Jiang X	2018-01-17	Nat Commun	Genome-wide association study in 79,366 European-ancestry individuals informs the genetic architecture of 25-hydroxyvitamin D levels.	Vitamin D levels (dietary vitamin D intake interaction)	39,868 European ancestry individuals	2,113 European ancestry individuals	4q13.3	GC	rs2282679-T	NR	1E-187				Affymetrix, Illumina [at least 1200000] (imputed)	N
1138	chr4	72608382	72608383	rs2282679	29325163	Hong J	2018-01-09	J Clin Endocrinol Metab	Trans-ethnic Evaluation Identifies Novel Low Frequency Loci Associated with 25-Hydroxyvitamin D Concentrations.	Serum 25-Hydroxyvitamin D levels	8,541 African American individuals, 3,485 Hispanic American individuals, 16,124 European ancestry individuals	NA	4q13.3	GC	rs2282679-T	NR	4E-62	(AA + Hispanic)			Affymetrix, Illumina [at least 398246] (imputed)	N
1138	chr4	72608382	72608383	rs2282679	29325163	Hong J	2018-01-09	J Clin Endocrinol Metab	Trans-ethnic Evaluation Identifies Novel Low Frequency Loci Associated with 25-Hydroxyvitamin D Concentrations.	Serum 25-Hydroxyvitamin D levels	8,541 African American individuals, 3,485 Hispanic American individuals, 16,124 European ancestry individuals	NA	4q13.3	GC	rs2282679-T	0.8	1E-6	(Hispanic)	4.9	(z-score) increase	Affymetrix, Illumina [at least 398246] (imputed)	N
1138	chr4	72608382	72608383	rs2282679	29325163	Hong J	2018-01-09	J Clin Endocrinol Metab	Trans-ethnic Evaluation Identifies Novel Low Frequency Loci Associated with 25-Hydroxyvitamin D Concentrations.	Serum 25-Hydroxyvitamin D levels	8,541 African American individuals, 3,485 Hispanic American individuals, 16,124 European ancestry individuals	NA	4q13.3	GC	rs2282679-T	0.77	4E-63		16.628	(z-score) increase	Affymetrix, Illumina [at least 398246] (imputed)	N
1138	chr4	72608382	72608383	rs2282679	22673963	Lasky-Su J	2012-06-07	Hum Genet	Genome-wide association analysis of circulating vitamin D levels in children with asthma.	Vitamin D levels	422 European ancestry trios with asthmatic children, 150 European ancestry asthmatic child cases	1,108 Hispanic asthmatic child cases	4q13.3	GC	rs2282679-?	0.29	2E-14				Illumina [547645]	N
1138	chr4	72608382	72608383	rs2282679	20541252	Wang TJ	2010-06-09	Lancet	Common genetic determinants of vitamin D insufficiency: a genome-wide association study.	Vitamin D insufficiency	16,125 European ancestry individuals	17,871 European ancestry individuals	4q13.3	GC	rs2282679-?	0.29	2E-109				Affymetrix, Illumina [up to 2548976] (imputed)	N
1138	chr4	72608382	72608383	rs2282679	20418485	Ahn J	2010-04-23	Hum Mol Genet	Genome-wide association study of circulating vitamin D levels.	Vitamin D levels	4,501 European ancestry individuals	2,221 European ancestry individuals	4q13.3	GC	rs2282679-C	0.26	2E-49		0.38	[0.32-0.44] unit decrease	Affymetrix, Illumina [593253] (imputed)	N
1138	chr4	72609397	72609398	rs3755967	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein JAG1	5,364 Icelandic ancestry individuals	NA	4q13.3		rs3755967-T	0.2856	7E-14		0.149289	[0.11-0.19] unit decrease	Illumina [7506463] (imputed)	N
1138	chr4	72609397	72609398	rs3755967	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	4q13.3		rs3755967-?	NR	1E-300		0.206767	[0.2-0.21] unit decrease	NR [6912294] (imputed)	N
1138	chr4	72609397	72609398	rs3755967	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	4q13.3		rs3755967-?	NR	4E-32				NR [~ 8900000] (imputed)	N
1138	chr4	72609397	72609398	rs3755967	29343764	Jiang X	2018-01-17	Nat Commun	Genome-wide association study in 79,366 European-ancestry individuals informs the genetic architecture of 25-hydroxyvitamin D levels.	Vitamin D levels	79,366 European ancestry individuals	42,757 European and unknown ancestry individuals	4q13.3	GC	rs3755967-T	NR	5E-343		0.089	[0.084-0.094] unit decrease	Affymetrix, Illumina [up to 3600000] (imputed)	N
1138	chr4	72610207	72610208	rs222047	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	4q13.3	NR	rs222047-?		1E-380	(GC)	1.153	[NR] unit decrease	Illumina [NR]	N
1138	chr4	72613035	72613036	rs705119	28800603	Arpawong TE	2017-08-11	PLoS One	Genetic variants specific to aging-related verbal memory: Insights from GWASs in a population-based cohort.	Verbal memory performance (residualized delayed recall level)	7,486 European ancestry individuals aged 50 years or older	6,898 European ancestry individuals aged 50 years or older	4q13.3	NR	rs705119-A	NR	9E-7			unit increase	Illumina [at least 1198956] (imputed)	N
1139	chr4	72614266	72614267	rs2298850	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	4q13.3	GC	rs2298850-C	0.278925	4E-11		0.016252609	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1139	chr4	72614266	72614267	rs2298850	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	4q13.3	NR	rs2298850-C	0.278208	2E-11		0.014216	[0.01-0.018] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1139	chr4	72615361	72615362	rs11723621	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	4q13.3		rs11723621-G	NR	2E-24		0.0239	[0.019-0.028] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
1139	chr4	72615361	72615362	rs11723621	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	4q13.3	NR	rs11723621-G	0.29001	8E-47		0.029079	[0.025-0.033] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1139	chr4	72615361	72615362	rs11723621	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	4q13.3	NR	rs11723621-G	0.290775	3E-37		0.026932	[0.023-0.031] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
1139	chr4	72615361	72615362	rs11723621	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	4q13.3	NR	rs11723621-G	0.290773	1E-10		0.013213	[0.0092-0.0173] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1139	chr4	72615361	72615362	rs11723621	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	4q13.3	NR	rs11723621-G	0.291123	3E-1689		0.18693	[0.18-0.19] unit decrease	Affymetrix [16668957] (imputed)	N
1139	chr4	72615361	72615362	rs11723621	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	4q13.3	GC	rs11723621-G	0.2918	2E-11		0.02635404	[0.019-0.034] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1139	chr4	72615361	72615362	rs11723621	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	4q13.3	GC	rs11723621-G	0.2919	5E-11		0.02597477	[0.018-0.034] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1139	chr4	72616326	72616327	rs843005	29325163	Hong J	2018-01-09	J Clin Endocrinol Metab	Trans-ethnic Evaluation Identifies Novel Low Frequency Loci Associated with 25-Hydroxyvitamin D Concentrations.	Serum 25-Hydroxyvitamin D levels	8,541 African American individuals, 3,485 Hispanic American individuals, 16,124 European ancestry individuals	NA	4q13.3	GC	rs843005-T	0.42	1E-12	(AA)	7.1	(z-score) increase	Affymetrix, Illumina [at least 398246] (imputed)	N
1139	chr4	72616617	72616618	rs560384646	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	4q13.3	NR	rs560384646-C	0.023835	7E-112		0.193328	[0.18-0.21] unit decrease	Affymetrix [16668957] (imputed)	N
1139	chr4	72617557	72617557	rs34265662	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	4q13.3		rs34265662-TA	NR	1E-24		0.0226	[0.018-0.027] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1139	chr4	72617774	72617775	rs1352846	34621292	Sampathkumar A	2021-09-21	Front Genet	Genetic Link Determining the Maternal-Fetal Circulation of Vitamin D.	Midgestational total 25-hydroxyvitamin D levels (antenatal blood)	up to 520 Chinese ancestry pregnant female individuals, up to 175 Indian ancestry pregnant female individuals, up to 247 Malay ancestry pregnant female individuals	NA	4q13.3		rs1352846-G	0.241	7E-10		8.88	unit decrease	Illumina [6978879] (imputed)	N
1139	chr4	72617774	72617775	rs1352846	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	417,580 European ancestry individuals	NA	4q13.3		rs1352846-A	0.708567	1E-300		0.194	[0.19-0.2] unit decrease	NR [7250403] (imputed)	N
1139	chr4	72617774	72617775	rs1352846	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	417,580 European ancestry individuals	80,998 European ancestry individuals, 1,632 individuals	4q13.3		rs1352846-A	0.708567	1E-300		0.193471	[0.19-0.2] unit increase	NR [8806780] (imputed)	N
1139	chr4	72617774	72617775	rs1352846	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	177,082 European ancestry individuals	NA	4q13.3		rs1352846-G	0.29	1E-300		0.2335	[0.23-0.24] unit increase	NR [8806780] (imputed)	N
1139	chr4	72617774	72617775	rs1352846	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	162,591 European ancestry individuals	NA	4q13.3		rs1352846-G	0.29	1E-300		0.1887	[0.18-0.2] unit increase	NR [8806780] (imputed)	N
1139	chr4	72617774	72617775	rs1352846	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D level variance	318,851 European ancestry individuals	NA	4q13.3		rs1352846-G	0.29	1E-297		0.1216	[0.12-0.13] unit decrease	NR [6098063] (imputed)	N
1139	chr4	72617774	72617775	rs1352846	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	4q13.3	GC	rs1352846-G	0.2919	2E-10		0.02509125	[0.017-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1139	chr4	72617774	72617775	rs1352846	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	4q13.3	GC	rs1352846-G	0.2919	1E-10		0.02545179	[0.018-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1139	chr4	72617774	72617775	rs1352846	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	4q13.3	GC	rs1352846-G	0.2919	2E-10		0.02509777	[0.017-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1139	chr4	72617774	72617775	rs1352846	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	4q13.3	GC	rs1352846-G	0.2919	1E-10		0.02531522	[0.018-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1139	chr4	72618322	72618323	rs4588	34621292	Sampathkumar A	2021-09-21	Front Genet	Genetic Link Determining the Maternal-Fetal Circulation of Vitamin D.	Neonatal total 25-hydroxyvitamin D levels (cord blood)	up to 399 Chinese ancestry neonates, up to 166 Indian ancestry neonates, up to 247 Malay ancestry neonates	NA	4q13.3		rs4588-T	0.25	1E-8		3.22	unit decrease	Illumina [6978879] (imputed)	N
1139	chr4	72618322	72618323	rs4588	34014961	Palmer ND	2021-05-20	PLoS One	Genome-wide association study of vitamin D concentrations and bone mineral density in the African American-Diabetes Heart Study.	Serum vitamin D-binding protein levels in type 2 diabetes	697 African American individuals	NA	4q13.3	GC	rs4588-?	NR	1E-14	conditional on [rs7041]	0.17	[0.13-0.21] ?g/mL increase	Illumina [3436913] (imputed)	N
1139	chr4	72618322	72618323	rs4588	33382404	Sallinen RJ	2020-12-31	J Nutr	Genetic Risk Score for Serum 25-Hydroxyvitamin D Concentration Helps to Guide Personalized Vitamin D Supplementation in Healthy Finnish Adults.	Serum 25-Hydroxyvitamin D levels	3,399 Finnish ancestry individuals	NA	4q13.3	GC	rs4588-A	0.201	2E-25		3.9	mmol/L decrease	Illumina [~ 7700000] (imputed)	N
1139	chr4	72618322	72618323	rs4588	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	4q13.3	GC	rs4588-T	0.292015	2E-11		0.01671525	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1139	chr4	72618322	72618323	rs4588	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	4q13.3	GC	rs4588-T	0.291994	4E-9		0.014614819	[0.0098-0.0195] unit decrease	Affymetrix [93095623] (imputed)	N
1139	chr4	72618322	72618323	rs4588	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q13.3	NR	rs4588-T	0.281416	2E-48				Affymetrix, Illumina [24649327] (imputed)	N
1139	chr4	72618322	72618323	rs4588	32047095	Traglia M	2020-02-11	Genetics	Genetic Contributions to Maternal and Neonatal Vitamin D Levels.	Neonatal total 25-hydroxyvitamin D levels (fetal genetic effect)	269 European ancestry individuals, 323 Hispanic individuals, 115 East Asian ancestry individuals, 23 African American individuals, 23 South Asian ancestry individuals, 23 individuals	NA	4q13.3	GC	rs4588-?	NR	3E-8		0.62	[0.40-0.84] unit decrease	Affymetrix [622716]	N
1139	chr4	72618322	72618323	rs4588	29545823	O'Brien KM	2018-03-01	Front Genet	Genome-Wide Association Study of Serum 25-Hydroxyvitamin D in US Women.	Serum 25-Hydroxyvitamin D levels	1,576 European ancestry individuals, 134 African American individuals, 81 Hispanic individuals, 38 individuals	1,307 European ancestry individuals, 722 European breast cancer cases, 693 European ancestry controls, 120 African-American individuals, 38 African American breast cancer cases, 46 African American controls, 59 Hispanic individuals, 27 Hispanic breast cancer cases, 27 Hispanic controls, 47 individuals, 23 breast cancer cases, 14 controls	4q13.3	GC	rs4588-A	NR	5E-38		3.5	[3.0-4.1] ng/mL decrease	Illumina [386449]	N
1139	chr4	72618322	72618323	rs4588	28757204	Manousaki D	2017-07-21	Am J Hum Genet	Low-Frequency Synonymous Coding Variation in CYP2R1 Has Large Effects on Vitamin D Levels and Risk of Multiple Sclerosis.	Vitamin D levels	2,619 whole genome sequenced European ancestry individuals, up to 38,213 European ancestry individuals, 1,442 individuals	NA	4q13.3	intergenic	rs4588-T	0.283	2E-263		0.25	[0.23-0.27] nmol/L decrease	Affymetrix, Illumina [11026511] (imputed)	N
1139	chr4	72618333	72618334	rs7041	35264221	Caron B	2022-03-09	Genome Med	Integrative genetic and immune cell analysis of plasma proteins in healthy donors identifies novel associations involving primary immune deficiency genes.	VDBP plasma levels	400 French ancestry individuals	NA	4q13.3		rs7041-C	NR	6E-57		0.566	[0.53-0.6] ug/mL decrease	Illumina [5201092] (imputed)	N
1139	chr4	72618333	72618334	rs7041	34014961	Palmer ND	2021-05-20	PLoS One	Genome-wide association study of vitamin D concentrations and bone mineral density in the African American-Diabetes Heart Study.	Serum vitamin D-binding protein levels in type 2 diabetes	697 African American individuals	NA	4q13.3	GC	rs7041-?	NR	9E-86		0.44	[0.4-0.48] ?g/mL increase	Illumina [3436913] (imputed)	N
1139	chr4	72618333	72618334	rs7041	34014961	Palmer ND	2021-05-20	PLoS One	Genome-wide association study of vitamin D concentrations and bone mineral density in the African American-Diabetes Heart Study.	Bioavailable vitamin D levels in type 2 diabetes	697 African American individuals	NA	4q13.3	GC	rs7041-?	NR	3E-19		0.16	[0.12-0.2] unit increase	Illumina [3436913] (imputed)	N
1139	chr4	72618333	72618334	rs7041	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	4q13.3	GC	rs7041-C	0.565	4E-19	(Protein jagged-1, JAG1.5092.51.3)	0.22	[0.18-0.26] unit increase	Affymetrix [10572788] (imputed)	N
1139	chr4	72618333	72618334	rs7041	29325163	Hong J	2018-01-09	J Clin Endocrinol Metab	Trans-ethnic Evaluation Identifies Novel Low Frequency Loci Associated with 25-Hydroxyvitamin D Concentrations.	Serum 25-Hydroxyvitamin D levels	8,541 African American individuals, 3,485 Hispanic American individuals, 16,124 European ancestry individuals	NA	4q13.3	GC	rs7041-C	0.17	1E-7	(AA)	5.3	(z-score) increase	Affymetrix, Illumina [at least 398246] (imputed)	N
1139	chr4	72618333	72618334	rs7041	24740207	Moy KA	2014-04-16	Am J Clin Nutr	Genome-wide association study of circulating vitamin D-binding protein.	Serum vitamin D-binding protein levels	1,380 European ancestry males	NA	4q13.3	GC	rs7041-T	0.35	1E-246		2109.34	[1985.17-2233.51] nmol/L decrease	Illumina [591610]	N
1139	chr4	72620787	72620788	rs76803094	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	4q13.3	NR	rs76803094-T	NR	1E-11		0.0571	[0.04-0.074] unit increase	Affymetrix [9000000] (imputed)	N
1139	chr4	72620894	72620895	rs200641845	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	4q13.3	NR	rs200641845-T	0.545188	7E-14		0.017645	[0.013-0.022] unit increase	Affymetrix [16668957] (imputed)	N
1139	chr4	72625771	72625772	rs565277381	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	4q13.3	NR	rs565277381-T	0.998975	7E-11		0.308457	[0.22-0.4] unit increase	Affymetrix [16668957] (imputed)	N
1139	chr4	72632641	72632642	rs75774690	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	4q13.3	NR	rs75774690-T	NR	3E-142		0.1427	[0.13-0.15] unit decrease	Affymetrix [9000000] (imputed)	N
1139	chr4	72635511	72635512	rs222017	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	4q13.3	NR	rs222017-T	NR	6E-44		0.0545	[0.047-0.062] unit decrease	Affymetrix [9000000] (imputed)	N
1139	chr4	72638109	72638110	rs114795365	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	4q13.3	NR	rs114795365-T	NR	1E-15		0.0603	[0.045-0.075] unit increase	Affymetrix [9000000] (imputed)	N
1139	chr4	72640749	72640750	rs3775150	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	4q13.3	NR	rs3775150-C	0.262221	4E-295		0.090838	[0.086-0.096] unit decrease	Affymetrix [16668957] (imputed)	N
1139	chr4	72643487	72643488	rs1155563	31841498	Kampe A	2019-12-16	PLoS Genet	Genetic variation in GC and CYP2R1 affects 25-hydroxyvitamin D concentration and skeletal parameters: A genome-wide association study in 24-month-old Finnish children.	Serum 25-Hydroxyvitamin D levels	761 Finnish ancestry infants	NA	4q13.3	GC	rs1155563-C	0.2041	1E-11		9.49	NR unit decrease	Illumina [5072729] (imputed)	N
1139	chr4	72643487	72643488	rs1155563	25208829	Anderson D	2014-09-11	Genes Immun	Genome-wide association study of vitamin D levels in children: replication in the Western Australian Pregnancy Cohort (Raine) study.	Vitamin D levels	645 European ancestry age 6 individuals, 28 age 6 individuals, 1,073 European ancestry age 14 individuals, 67 age 14 individuals	NA	4q13.3	GC	rs1155563-C	0.28	4E-9	(Age 14)	0.94	[0.92-0.96] unit increase	Illumina [2461244] (imputed)	N
1139	chr4	72643759	72643760	rs222026	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	4q13.3	NR	rs222026-T	0.870776	7E-68		0.052159	[0.046-0.058] unit decrease	Affymetrix [16668957] (imputed)	N
1139	chr4	72660247	72660248	rs144616029	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Measles	38,219 European ancestry cases, 47,279 European ancestry controls	NA	4q13.3	NR	rs144616029-?	NR	4E-6		0.24	[0.14-0.34] unit decrease	Illumina [at least 560000] (imputed)	N
1139	chr4	72668161	72668162	rs77317329	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	4q13.3	NR	rs77317329-G	NR	2E-48		0.1425	[0.12-0.16] unit decrease	Affymetrix [9000000] (imputed)	N
1139	chr4	72682450	72682451	rs114360759	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	4q13.3	NR	rs114360759-A	NR	4E-77		0.1313	[0.12-0.15] unit decrease	Affymetrix [9000000] (imputed)	N
1139	chr4	72705715	72705716	rs190688847	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	4q13.3	NR	rs190688847-C	0.997836	1E-18		0.290557	[0.23-0.36] unit increase	Affymetrix [16668957] (imputed)	N
1139	chr4	72705907	72705908	rs1402155	29325163	Hong J	2018-01-09	J Clin Endocrinol Metab	Trans-ethnic Evaluation Identifies Novel Low Frequency Loci Associated with 25-Hydroxyvitamin D Concentrations.	Serum 25-Hydroxyvitamin D levels	8,541 African American individuals, 3,485 Hispanic American individuals, 16,124 European ancestry individuals	NA	4q13.3	GC	rs1402155-G	0.67	3E-6	(Hispanic)	4.7	(z-score) increase	Affymetrix, Illumina [at least 398246] (imputed)	N
1139	chr4	72707338	72707339	rs1715947	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	4q13.3	NR	rs1715947-A	NR	3E-18		0.0689	[0.053-0.084] unit decrease	Affymetrix [9000000] (imputed)	N
1139	chr4	72707820	72707821	rs1851024	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	4q13.3	GC	rs1851024-?	NR	3E-12	(Alb)	0.06539091	NR unit decrease	Illumina [609262]	N
1139	chr4	72707820	72707821	rs1851024	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	4q13.3	GC	rs1851024-?	NR	7E-7	(Alb)	0.062848	NR unit decrease	Illumina [609262]	N
1139	chr4	72707820	72707821	rs1851024	22916037	Inouye M	2012-08-16	PLoS Genet	Novel Loci for metabolic networks and multi-tissue expression studies reveal genes for atherosclerosis.	Metabolite levels	6,608 European ancestry individuals	NA	4q13.3	GC	rs1851024-?	0.05	1E-14				Illumina [~ 2000000] (imputed)	N
1139	chr4	72719032	72719033	rs1607741	28757204	Manousaki D	2017-07-21	Am J Hum Genet	Low-Frequency Synonymous Coding Variation in CYP2R1 Has Large Effects on Vitamin D Levels and Risk of Multiple Sclerosis.	Vitamin D levels	2,619 whole genome sequenced European ancestry individuals, up to 38,213 European ancestry individuals, 1,442 individuals	NA	4q13.3	intergenic	rs1607741-C	0.684	1E-58		0.12	[0.1-0.14] nmol/L increase	Affymetrix, Illumina [11026511] (imputed)	N
1139	chr4	72721344	72721345	rs2017905	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	4q13.3		rs2017905-?	NR	8E-164		0.0555741	[0.052-0.06] unit decrease	NR [6912294] (imputed)	N
1139	chr4	72734467	72734468	rs77431995	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	4q13.3	NR	rs77431995-A	NR	2E-82		0.1169	[0.1-0.13] unit decrease	Affymetrix [9000000] (imputed)	N
1139	chr4	72739097	72739098	rs13113067	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	4q13.3	NR	rs13113067-?		2E-49	(GC)	0.5683	[NR] unit decrease	Illumina [NR]	N
1140	chr4	72745266	72745267	rs17767445	29325163	Hong J	2018-01-09	J Clin Endocrinol Metab	Trans-ethnic Evaluation Identifies Novel Low Frequency Loci Associated with 25-Hydroxyvitamin D Concentrations.	Serum 25-Hydroxyvitamin D levels	8,541 African American individuals, 3,485 Hispanic American individuals, 16,124 European ancestry individuals	NA	4q13.3	GC	rs17767445-A	0.15	6E-13		7.198	(z-score) increase	Affymetrix, Illumina [at least 398246] (imputed)	N
1140	chr4	72752845	72752846	rs184291421	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	4q13.3	NR	rs184291421-C	0.994155	1E-28		0.170103	[0.14-0.2] unit increase	Affymetrix [16668957] (imputed)	N
1140	chr4	72764038	72764039	rs10021949	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	4q13.3		rs10021949-?	NR	9E-144		0.0580424	[0.054-0.062] unit increase	NR [6912294] (imputed)	N
1140	chr4	72783384	72783385	rs188838036	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	4q13.3	NR	rs188838036-A	0.995469	3E-24		0.17944	[0.14-0.21] unit increase	Affymetrix [16668957] (imputed)	N
1140	chr4	72785742	72785743	rs186881826	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	4q13.3	NR	rs186881826-A	0.223069	4E-77		0.045907	[0.041-0.051] unit increase	Affymetrix [16668957] (imputed)	N
1140	chr4	72786421	72786422	rs13108630	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	4q13.3	NR	rs13108630-C	NR	3E-55		0.0779	[0.068-0.088] unit increase	Affymetrix [9000000] (imputed)	N
1140	chr4	72800454	72800455	rs34562866	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	4q13.3	NR	rs34562866-A	NR	7E-63		0.0465	[0.041-0.052] unit increase	Affymetrix [9000000] (imputed)	N
1140	chr4	72816088	72816089	rs116569570	29317602	Hall LS	2018-01-10	Transl Psychiatry	Genome-wide meta-analyses of stratified depression in Generation Scotland and UK Biobank.	Major depressive disorder	6,997 European ancestry female cases, 16,172 European ancestry female controls, 3,852 European ancestry male cases, 16,034 European ancestry male controls	NA	4q13.3	intergenic	rs116569570-A	NR	5E-6	(females)	0.16	[0.082-0.238] unit decrease	Affymetrix, Illumina [7105178] (imputed)	N
1140	chr4	72820769	72820770	rs116651750	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	4q13.3	NR	rs116651750-A	NR	3E-64		0.1288	[0.11-0.14] unit decrease	Affymetrix [9000000] (imputed)	N
1140	chr4	72820968	72820969	rs186441690	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	4q13.3	NR	rs186441690-G	0.997189	2E-18		0.26711	[0.21-0.33] unit decrease	Affymetrix [16668957] (imputed)	N
1140	chr4	72826735	72826736	rs114687675	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	4q13.3	NR	rs114687675-?	NR	2E-9	(CXCL10)	0.985824	[0.66-1.31] unit increase	Illumina [11901634] (imputed)	N
1140	chr4	72834777	72834778	rs115157626	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	4q13.3	NR	rs115157626-G	NR	5E-11		0.0514	[0.036-0.067] unit increase	Affymetrix [9000000] (imputed)	N
1140	chr4	72864565	72864566	rs546541682	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	4q13.3	NR	rs546541682-T	0.994255	2E-18		0.156566	[0.12-0.19] unit decrease	Affymetrix [16668957] (imputed)	N
1140	chr4	72871281	72871282	rs79761689	28757204	Manousaki D	2017-07-21	Am J Hum Genet	Low-Frequency Synonymous Coding Variation in CYP2R1 Has Large Effects on Vitamin D Levels and Risk of Multiple Sclerosis.	Vitamin D levels	2,619 whole genome sequenced European ancestry individuals, up to 38,213 European ancestry individuals, 1,442 individuals	NA	4q13.3	intergenic	rs79761689-C	0.049	3E-30		0.19	[0.15-0.23] nmol/L decrease	Affymetrix, Illumina [11026511] (imputed)	N
1141	chr4	72887538	72887539	rs7681295	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q13.3	NR	rs7681295-G	0.03484	2E-8	(ACSM2B)	1.084	NR unit increase	Illumina [1671387] (imputed)	N
1141	chr4	72896014	72896015	rs114112733	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	4q13.3	NR	rs114112733-G	NR	1E-21		0.0587	[0.047-0.071] unit increase	Affymetrix [9000000] (imputed)	N
1141	chr4	72920084	72920085	rs143106299	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	4q13.3	NR	rs143106299-T	0.005747	2E-28		0.169038	[0.14-0.2] unit decrease	Affymetrix [16668957] (imputed)	N
1141	chr4	72974747	72974748	rs13107347	29325163	Hong J	2018-01-09	J Clin Endocrinol Metab	Trans-ethnic Evaluation Identifies Novel Low Frequency Loci Associated with 25-Hydroxyvitamin D Concentrations.	Serum 25-Hydroxyvitamin D levels	8,541 African American individuals, 3,485 Hispanic American individuals, 16,124 European ancestry individuals	NA	4q13.3	GC	rs13107347-C	0.33	8E-10		6.145	(z-score) increase	Affymetrix, Illumina [at least 398246] (imputed)	N
1142	chr4	73031942	73031943	rs138485827	28757204	Manousaki D	2017-07-21	Am J Hum Genet	Low-Frequency Synonymous Coding Variation in CYP2R1 Has Large Effects on Vitamin D Levels and Risk of Multiple Sclerosis.	Vitamin D levels	2,619 whole genome sequenced European ancestry individuals, up to 38,213 European ancestry individuals, 1,442 individuals	NA	4q13.3	intergenic	rs138485827-T	0.072	2E-21		0.13	[0.11-0.15] nmol/L decrease	Affymetrix, Illumina [11026511] (imputed)	N
1142	chr4	73041739	73041742	rs143611734	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	4q13.3	NR	rs143611734-?	NR	2E-9	(CXCL10)	0.970322	[0.65-1.29] unit increase	Illumina [11901634] (imputed)	N
1142	chr4	73050991	73050992	rs79190329	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	4q13.3	NR	rs79190329-C	NR	2E-13		0.0282	[0.021-0.036] unit increase	Affymetrix [9000000] (imputed)	N
1142	chr4	73055313	73055314	rs7665177	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	4q13.3	NR	rs7665177-T	NR	2E-76		0.0872	[0.078-0.096] unit increase	Affymetrix [9000000] (imputed)	N
1142	chr4	73061026	73061027	rs1513895	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (mother's age at death)	270,548 European ancestry individuals	NA	4q13.3	NR	rs1513895-A	NR	8E-6		0.05688	[0.032-0.082] unit decrease	Illumina [541493]	N
1142	chr4	73092793	73092794	rs1988241	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	4q13.3	NR	rs1988241-A	NR	1E-9		0.0433	[0.029-0.057] unit increase	Affymetrix [9000000] (imputed)	N
1142	chr4	73096167	73096168	rs970649	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	4q13.3	NR	rs970649-?		1E-29	(GC)	0.4145	[NR] unit decrease	Illumina [NR]	N
1142	chr4	73107793	73107794	rs72653954	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	4q13.3	NR	rs72653954-C	NR	6E-10		0.0598	[0.041-0.079] unit decrease	Affymetrix [9000000] (imputed)	N
1142	chr4	73110571	73110572	rs114204813	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	4q13.3	NR	rs114204813-G	NR	9E-31		0.0958	[0.08-0.112] unit decrease	Affymetrix [9000000] (imputed)	N
1143	chr4	73151924	73151925	rs77899120	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	4q13.3	NR	rs77899120-?	NR	1E-15	(CXCL10)	1.74665	[1.32-2.18] unit increase	Illumina [11901634] (imputed)	N
1143	chr4	73171189	73171190	rs78862524	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	4q13.3		rs78862524-?	NR	9E-11				NR [~ 8900000] (imputed)	N
1143	chr4	73171189	73171190	rs78862524	28757204	Manousaki D	2017-07-21	Am J Hum Genet	Low-Frequency Synonymous Coding Variation in CYP2R1 Has Large Effects on Vitamin D Levels and Risk of Multiple Sclerosis.	Vitamin D levels	2,619 whole genome sequenced European ancestry individuals, up to 38,213 European ancestry individuals, 1,442 individuals	NA	4q13.3	intergenic	rs78862524-A	0.053	5E-20		0.16	[0.12-0.2] nmol/L decrease	Affymetrix, Illumina [11026511] (imputed)	N
1143	chr4	73178174	73178175	rs150270324	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	4q13.3	NR	rs150270324-C	NR	8E-11		0.0703	[0.049-0.091] unit decrease	Affymetrix [9000000] (imputed)	N
1143	chr4	73181563	73181564	rs74652320	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	4q13.3	NR	rs74652320-T	NR	4E-18		0.0653	[0.051-0.08] unit decrease	Affymetrix [9000000] (imputed)	N
1143	chr4	73181636	73181637	rs139921635	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	4q13.3	NR	rs139921635-T	NR	3E-12		0.0564	[0.041-0.072] unit increase	Affymetrix [9000000] (imputed)	N
1143	chr4	73181636	73181637	rs139921635	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	4q13.3	ADAMTS3	rs139921635-T	0.0236	3E-10		0.0395	[0.027-0.052] unit increase	Affymetrix [18391927] (imputed)	N
1143	chr4	73181636	73181637	rs139921635	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	244,730 European ancestry women	NA	4q13.3	ADAMTS3	rs139921635-T	0.024	3E-6		0.04	[0.024-0.056] unit increase	Affymetrix [18391927] (imputed)	N
1143	chr4	73236242	73236243	rs113209890	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	4q13.3	NR	rs113209890-T	NR	1E-45		0.0576	[0.05-0.066] unit decrease	Affymetrix [9000000] (imputed)	N
1144	chr4	73274418	73274418	rs34586561	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 2)	19,670 European ancestry individuals	NA	4q13.3		rs34586561-?	NR	2E-11				NR [9705931] (imputed)	N
1144	chr4	73303393	73303394	rs151193598	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Total cholesterol levels in small LDL	8,372 Finnish ancestry males	NA	4q13.3	RP11-373J21.1	rs151193598-?	NR	3E-8	(conditioned on 885 SNPs)	0.5	unit increase	Illumina [15144991] (imputed)	N
1144	chr4	73303393	73303394	rs151193598	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Total cholesterol levels in LDL	8,372 Finnish ancestry males	NA	4q13.3	RP11-373J21.1	rs151193598-?	NR	3E-10		0.395	unit increase	Illumina [15144991] (imputed)	N
1144	chr4	73303393	73303394	rs151193598	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Small LDL particle concentration	8,372 Finnish ancestry males	NA	4q13.3	RP11-373J21.1	rs151193598-?	NR	3E-18		0.544	unit increase	Illumina [15144991] (imputed)	N
1144	chr4	73303393	73303394	rs151193598	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Serum total cholesterol levels	8,372 Finnish ancestry males	NA	4q13.3	RP11-373J21.1	rs151193598-?	NR	2E-13		0.46	unit increase	Illumina [15144991] (imputed)	N
1144	chr4	73317203	73317204	rs11932872	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	4q13.3		rs11932872-A	0.31	2E-31		11.68	z score increase	Affymetrix [9061022] (imputed)	N
1144	chr4	73322564	73322565	rs115136538	22286219	Kettunen J	2012-01-29	Nat Genet	Genome-wide association study identifies multiple loci influencing human serum metabolite levels.	Lipid metabolism phenotypes	8,330 European ancestry individuals	NA	4q13.3	ALB	rs115136538-?	NR	5E-18	(Albumin)	0.51	[0.39-0.63] unit decrease	Illumina [~ 7700000] (imputed)	N
1144	chr4	73334050	73334051	rs1383930	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	4q13.3	ADAMTS3	rs1383930-?		2E-9				NR [7428630] (imputed)	N
1144	chr4	73336092	73336093	rs13128909	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	4q13.3		rs13128909-C	0.33	1E-15		8.03	z score increase	Affymetrix [9061022] (imputed)	N
1144	chr4	73343923	73343924	rs148537832	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	4q13.3	ADAMTS3	rs148537832-C	NR	4E-8		0.0370041	[0.024-0.05] unit increase	Affymetrix [321114] (imputed)	N
1144	chr4	73358245	73358246	rs146397235	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Coronary artery disease in diabetes	361 Korean ancestry cases, 4,951 Korean ancestry controls	NA	4q13.3		rs146397235-T	0.01178	5E-7		3.412	[2.117-5.497]	Affymetrix [7975321] (imputed)	N
1144	chr4	73358245	73358246	rs146397235	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Cardio-cerebrovascular disease in diabetes mellitus	497 Korean ancestry cases, 4,815 Korean ancestry controls	NA	4q13.3		rs146397235-T	0.01178	3E-6		2.892	[1.847-4.527]	Affymetrix [7975321] (imputed)	N
1144	chr4	73364993	73364994	rs788927	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	4q13.3	ADAMTS3	rs788927-A	NR	1E-9		0.0387972	[0.026-0.051] unit increase	Affymetrix [321016] (imputed)	N
1144	chr4	73374023	73374024	rs788930	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	4q13.3	NR	rs788930-C	0.3001	5E-15				NR [9056863] (imputed)	N
1144	chr4	73379011	73379012	rs788935	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	4q13.3	ADAMTS3	rs788935-C	NR	6E-9		0.0180195	[0.012-0.024] unit increase	Affymetrix [323123] (imputed)	N
1144	chr4	73386544	73386545	rs114506919	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	4q13.3		rs114506919-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1145	chr4	73413421	73413422	rs138414234	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	4q13.3	NR	rs138414234-?	NR	3E-10	(CXCL10)	1.1069	[0.76-1.45] unit increase	Illumina [11901634] (imputed)	N
1145	chr4	73414285	73414286	rs788908	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	4q13.3		rs788908-T	0.6182	2E-11		0.09444708	[0.067-0.122] mmHg decrease	Affymetrix, Illumina [242866] (imputed)	N
1145	chr4	73414729	73414730	rs61317550	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	4q13.3		rs61317550-G	0.33	2E-20		9.24	z score increase	Affymetrix [9061022] (imputed)	N
1145	chr4	73414729	73414730	rs61317550	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	4q13.3	THADA, ZFP36L2, PLEKHH2	rs61317550-?		2E-8				NR [7428630] (imputed)	N
1145	chr4	73417021	73417022	rs67546436	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	4q13.3	NR	rs67546436-A	0.3065	1E-17				NR [9056863] (imputed)	N
1145	chr4	73417523	73417524	rs1383934	23259602	Wang X	2012-12-21	BMC Oral Health	Genome-wide association scan of dental caries in the permanent dentition.	Dental caries	1,483 European ancestry comparatively younger individuals, 5,960 European ancestry comparatively older individuals	NA	4q13.3	ADAMTS3	rs1383934-?	NR	3E-7				Affymetrix, Illumina [~ 1400000] (imputed)	N
1145	chr4	73417523	73417524	rs1383934	23259602	Wang X	2012-12-21	BMC Oral Health	Genome-wide association scan of dental caries in the permanent dentition.	Dental caries	1,483 European ancestry comparatively younger individuals, 5,960 European ancestry comparatively older individuals	NA	4q13.3	ADAMTS3	rs1383934-?	NR	2E-6	(Comparatively Older)			Affymetrix, Illumina [~ 1400000] (imputed)	N
1145	chr4	73420618	73420619	rs36055662	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	4q13.3	NR	rs36055662-?	NR	5E-8				Affymetrix [~ 8270000] (imputed)	N
1145	chr4	73420633	73420634	rs13105983	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	4q13.3	ADAMTS3	rs13105983-?	NR	3E-9		0.0293294	[0.02-0.039] unit decrease	Illumina [4804024] (imputed)	N
1145	chr4	73434530	73434535	rs751683328	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	4q13.3	ADAMTS3	rs751683328-C	NR	3E-11		0.0224801	[0.016-0.029] unit decrease	Affymetrix [321114] (imputed)	N
1145	chr4	73434530	73434535	rs751683328	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	4q13.3	ADAMTS3	rs751683328-C	NR	5E-10		0.0207792	[0.014-0.027] unit decrease	Affymetrix [323123] (imputed)	N
1145	chr4	73436928	73436928	rs11371843	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	4q13.3	ADAMTS3	rs11371843-GT	NR	4E-9		0.0187001	[0.012-0.025] unit increase	Affymetrix [323123] (imputed)	N
1145	chr4	73441824	73441824	rs61069325	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	4q13.3	ADAMTS3	rs61069325-C	NR	1E-8		0.0176029	[0.012-0.024] unit increase	Affymetrix [323858] (imputed)	N
1145	chr4	73442048	73442049	rs6844700	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	4q13.3	NR	rs6844700-?	NR	5E-10				Affymetrix [NR]	N
1145	chr4	73465478	73465479	rs7377527	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	4q13.3	ADAMTS3	rs7377527-A	NR	1E-10		0.037182	[0.026-0.048] unit increase	Affymetrix [321016] (imputed)	N
1145	chr4	73472940	73472941	rs1589163	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	4q13.3		rs1589163-T	NR	4E-8		0.0093	[0.006-0.0126] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1145	chr4	73472940	73472941	rs1589163	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	4q13.3	ADAMTS3	rs1589163-C	NR	1E-19		0.025646	[0.02-0.031] unit increase	Affymetrix [321016] (imputed)	N
1145	chr4	73473150	73473151	rs7657200	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	35,422 individuals (>=25 years old)	NA	4q13.3		rs7657200-A	NR	9E-9		0.0131	[0.0088-0.0174] mm increase	Affymetrix, Illumina [8936601] (imputed)	N
1145	chr4	73473150	73473151	rs7657200	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	29,580 European ancestry individuals, 14,462 Asian ancestry individuals	88,218 European ancestry individuals	4q13.3		rs7657200-A	0.39	2E-38		0.014	mm increase	Affymetrix, Illumina [8936601] (imputed)	N
1145	chr4	73473150	73473151	rs7657200	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	29,580 European ancestry individuals	NA	4q13.3		rs7657200-A	0.38	1E-9		0.016	mm increase	Affymetrix, Illumina [8936601] (imputed)	N
1145	chr4	73474241	73474242	rs181946711	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Total cholesterol levels in small LDL	8,372 Finnish ancestry males	NA	4q13.3	ADAMTS3	rs181946711-?	NR	7E-9	(conditioned on 885 SNPs)	0.5	unit increase	Illumina [15144991] (imputed)	N
1145	chr4	73474241	73474242	rs181946711	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Small LDL particle concentration	8,372 Finnish ancestry males	NA	4q13.3	ADAMTS3	rs181946711-?	NR	4E-9	(conditioned on 885 SNPs)	0.5	unit increase	Illumina [15144991] (imputed)	N
1145	chr4	73476013	73476014	rs9993613	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	4q13.3	NR	rs9993613-?	NR	8E-13		0.04366034	[0.032-0.056] unit decrease	Illumina [34656550] (imputed)	N
1145	chr4	73476013	73476014	rs9993613	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	4q13.3	ADAMTS3	rs9993613-T	0.4723	7E-10	(EA)	0.0275	[0.019-0.036] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1145	chr4	73476013	73476014	rs9993613	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	4q13.3	ADAMTS3	rs9993613-T	0.4723	1E-7	(EA, women)	0.0287	[0.018-0.039] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1145	chr4	73476013	73476014	rs9993613	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	4q13.3	ADAMTS3	rs9993613-T	0.473	5E-24		0.03	[0.024-0.036] unit increase	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
1145	chr4	73476900	73476901	rs16848284	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	4q13.3	ADAMTS3	rs16848284-C	0.4458	9E-6	(EA, women)	0.0215	[0.012-0.031] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1145	chr4	73476900	73476901	rs16848284	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	4q13.3	ADAMTS3	rs16848284-C	0.4458	2E-8	(EA)	0.0211	[0.014-0.028] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1145	chr4	73476900	73476901	rs16848284	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	4q13.3	ADAMTS3	rs16848284-C	0.4458	7E-7	(EA)	0.0214	[0.013-0.03] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1145	chr4	73476900	73476901	rs16848284	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	4q13.3	ADAMTS3	rs16848284-?	0.4458	4E-8	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1145	chr4	73483188	73483189	rs75682840	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	4q13.3	NR	rs75682840-G	0.0652593	1E-12		0.139024	[0.1-0.18] unit decrease	Affymetrix [21375087] (imputed)	N
1145	chr4	73487091	73487092	rs28627296	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	4q13.3	ADAMTS3	rs28627296-G	NR	6E-14		0.0213758	[0.016-0.027] unit increase	Affymetrix [321114] (imputed)	N
1145	chr4	73491621	73491622	rs537526354	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Total cholesterol levels in small LDL	8,372 Finnish ancestry males	NA	4q13.3	ADAMTS3	rs537526354-?	NR	2E-9	(conditioned on 885 SNPs)	0.5	unit increase	Illumina [15144991] (imputed)	N
1145	chr4	73491621	73491622	rs537526354	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Total cholesterol levels in medium LDL	8,372 Finnish ancestry males	NA	4q13.3	ADAMTS3	rs537526354-?	NR	4E-8	(conditioned on 885 SNPs)	0.5	unit increase	Illumina [15144991] (imputed)	N
1145	chr4	73491621	73491622	rs537526354	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Small LDL particle concentration	8,372 Finnish ancestry males	NA	4q13.3	ADAMTS3	rs537526354-?	NR	1E-9	(conditioned on 885 SNPs)	0.5	unit increase	Illumina [15144991] (imputed)	N
1145	chr4	73491621	73491622	rs537526354	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Medium LDL particle concentration	8,372 Finnish ancestry males	NA	4q13.3	ADAMTS3	rs537526354-?	NR	2E-8	(conditioned on 885 SNPs)	0.5	unit increase	Illumina [15144991] (imputed)	N
1145	chr4	73491621	73491622	rs537526354	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Cholesterol ester levels in medium LDL	8,372 Finnish ancestry males	NA	4q13.3	ADAMTS3	rs537526354-?	NR	3E-8	(conditioned on 885 SNPs)	0.5	unit increase	Illumina [15144991] (imputed)	N
1145	chr4	73496690	73496691	rs4694504	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	4q13.3	ADAMTS3	rs4694504-G	NR	5E-20		0.0282859	[0.022-0.034] unit increase	Affymetrix [321114] (imputed)	N
1145	chr4	73496690	73496691	rs4694504	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	4q13.3	NR	rs4694504-?	NR	8E-32				Affymetrix [~ 8270000] (imputed)	N
1145	chr4	73496690	73496691	rs4694504	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	4q13.3	intergenic	rs4694504-G	0.481255	6E-29	(females)	0.03761	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1145	chr4	73496690	73496691	rs4694504	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	4q13.3	intergenic	rs4694504-G	0.481255	3E-28		0.02835	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1145	chr4	73496690	73496691	rs4694504	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	4q13.3	intergenic	rs4694504-G	0.481255	5E-22	(females)	0.03248	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1145	chr4	73496690	73496691	rs4694504	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	4q13.3	intergenic	rs4694504-G	0.481255	1E-21		0.02497	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1145	chr4	73496690	73496691	rs4694504	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	4q13.3	ADAMTS3	rs4694504-A	0.5355	3E-10		0.04	[0.027-0.053] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1145	chr4	73500066	73500067	rs189962344	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	4q13.3	NR	rs189962344-?	NR	2E-6	(EA)	0.9147	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1145	chr4	73505825	73505826	rs192785674	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	4q13.3	NR	rs192785674-A	0.996588	8E-11		0.168744	[0.12-0.22] unit increase	Affymetrix [16668957] (imputed)	N
1145	chr4	73515312	73515313	rs7697556	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	4q13.3		rs7697556-C	NR	2E-75		0.0236	[0.021-0.026] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1145	chr4	73515312	73515313	rs7697556	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	4q13.3		rs7697556-T	0.4781	1E-10		0.08759555	[0.06-0.115] mmHg increase	Affymetrix, Illumina [242866] (imputed)	N
1145	chr4	73515312	73515313	rs7697556	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	4q13.3	NR	rs7697556-?	NR	4E-13		0.04401733	[0.032-0.056] unit decrease	Illumina [34656550] (imputed)	N
1145	chr4	73515312	73515313	rs7697556	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	4q13.3		rs7697556-?	NR	2E-86				NR [~ 8900000] (imputed)	N
1145	chr4	73515312	73515313	rs7697556	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in non-smokers	77,113 European ancestry women, 47,319 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	4q13.3	ADAMTS3	rs7697556-T	0.487	9E-20		0.027	[0.021-0.033] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1145	chr4	73515312	73515313	rs7697556	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	4q13.3	ADAMTS3	rs7697556-T	NR	3E-19				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1145	chr4	73515312	73515313	rs7697556	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	4q13.3	ADAMTS3	rs7697556-T	0.486	5E-19		0.024	[0.018-0.03] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1145	chr4	73515312	73515313	rs7697556	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	4q13.3	ADAMTS3	rs7697556-T	0.47	2E-14		0.028	[NR] unit increase	Affymetrix, Illumina [2834208] (imputed)	N
1145	chr4	73515824	73515825	rs16848425	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	4q13.3	ADAMTS3	rs16848425-T	0.2	7E-12		0.034	[0.02-0.048] unit increase	Affymetrix, Illumina [2704730] (imputed)	N
1145	chr4	73520264	73520265	rs192975004	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Total cholesterol levels in small LDL	8,372 Finnish ancestry males	NA	4q13.3	ADAMTS3	rs192975004-?	NR	2E-9	(conditioned on 885 SNPs)	0.5	unit increase	Illumina [15144991] (imputed)	N
1145	chr4	73520264	73520265	rs192975004	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Total cholesterol levels in medium LDL	8,372 Finnish ancestry males	NA	4q13.3	ADAMTS3	rs192975004-?	NR	4E-8	(conditioned on 885 SNPs)	0.5	unit increase	Illumina [15144991] (imputed)	N
1145	chr4	73520264	73520265	rs192975004	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Small LDL particle concentration	8,372 Finnish ancestry males	NA	4q13.3	ADAMTS3	rs192975004-?	NR	1E-9	(conditioned on 885 SNPs)	0.5	unit increase	Illumina [15144991] (imputed)	N
1145	chr4	73520264	73520265	rs192975004	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Medium LDL particle concentration	8,372 Finnish ancestry males	NA	4q13.3	ADAMTS3	rs192975004-?	NR	2E-8	(conditioned on 885 SNPs)	0.5	unit increase	Illumina [15144991] (imputed)	N
1145	chr4	73520264	73520265	rs192975004	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Cholesterol ester levels in medium LDL	8,372 Finnish ancestry males	NA	4q13.3	ADAMTS3	rs192975004-?	NR	3E-8	(conditioned on 885 SNPs)	0.5	unit increase	Illumina [15144991] (imputed)	N
1145	chr4	73524202	73524203	rs11942991	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	4q13.3	ADAMTS3	rs11942991-C	NR	1E-19		0.0278876	[0.022-0.034] unit decrease	Affymetrix [323123] (imputed)	N
1145	chr4	73526278	73526279	rs28608630	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	4q13.3	NR	rs28608630-G	0.0630687	9E-19		0.125717	[0.098-0.153] unit decrease	Affymetrix [17914406] (imputed)	N
1145	chr4	73527512	73527513	rs9995997	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	4q13.3	ADAMTS3, COX18	rs9995997-?	NR	3E-11		0.021904875	[0.015-0.028] unit decrease	Illumina [27896057] (imputed)	N
1145	chr4	73528696	73528697	rs10518107	26785701	Wen W	2016-01-20	Sci Rep	Genome-wide association studies in East Asians identify new loci for waist-hip ratio and waist circumference.	Waist circumference adjusted for body mass index	up to 44,609 East Asian individuals	up to 24,146 East Asian individuals, up to 229,290 individuals	4q13.3	ADAMTS3	rs10518107-A	0.202	9E-8	(East Asian)	0.023	[0.015-0.031] unit increase	Affymetrix, Illumina [at least 1850000] (imputed)	N
1145	chr4	73529751	73529752	rs55854248	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	4q13.3		rs55854248-T	0.240134	7E-29		0.0262921	[0.022-0.031] unit increase	Illumina [13479295] (imputed)	N
1145	chr4	73529751	73529752	rs55854248	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	4q13.3	ADAMTS3, COX18	rs55854248-?	NR	3E-32		0.039420243	[0.033-0.046] unit increase	Illumina [27896057] (imputed)	N
1146	chr4	73535246	73535246	rs550937743	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	4q13.3	NR	rs550937743-GA	0.126922	1E-9		0.093264	[0.063-0.124] unit decrease	Affymetrix [21375087] (imputed)	N
1146	chr4	73538469	73538470	rs150470677	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	4q13.3	NR	rs150470677-?	NR	1E-10	(CXCL10)	1.1524	[0.8-1.5] unit increase	Illumina [11901634] (imputed)	N
1146	chr4	73541683	73541684	rs11729800	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	4q13.3	NR	rs11729800-G	NR	9E-21		0.0458	[0.036-0.055] unit decrease	Affymetrix [9000000] (imputed)	N
1146	chr4	73549558	73549559	rs58083390	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	4q13.3	ADAMTS3	rs58083390-T	NR	6E-12		0.042451	[0.03-0.055] unit increase	Affymetrix [321114] (imputed)	N
1146	chr4	73549558	73549559	rs58083390	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	4q13.3	intergenic	rs58083390-T	0.0708	3E-18		0.0327	[0.025-0.04] unit decrease	Affymetrix [18391927] (imputed)	N
1146	chr4	73549558	73549559	rs58083390	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	4q13.3	NR	rs58083390-?	NR	2E-28				Affymetrix [~ 8270000] (imputed)	N
1146	chr4	73550458	73550459	rs57307615	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	4q13.3	ADAMTS3	rs57307615-A	NR	4E-9		0.0348488	[0.023-0.046] unit increase	Affymetrix [321169] (imputed)	N
1146	chr4	73550702	73550703	rs143778384	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	4q13.3	ADAMTS3	rs143778384-G	NR	4E-10		0.0489319	[0.034-0.064] unit increase	Affymetrix [321114] (imputed)	N
1146	chr4	73552541	73552542	rs2366307	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	4q13.3	ADAMTS3	rs2366307-T	NR	1E-13		0.0429787	[0.032-0.054] unit increase	Affymetrix [321114] (imputed)	N
1146	chr4	73553491	73553492	rs58569653	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	4q13.3	ADAMTS3	rs58569653-C	NR	4E-9		0.0374199	[0.025-0.05] unit increase	Affymetrix [323123] (imputed)	N
1146	chr4	73555555	73555556	rs28616128	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	4q13.3	HNRNPA1P67	rs28616128-G	NR	5E-10		0.0365144	[0.025-0.048] unit increase	Affymetrix [321114] (imputed)	N
1146	chr4	73555555	73555556	rs28616128	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	4q13.3	HNRNPA1P67	rs28616128-G	NR	3E-8		0.0356226	[0.023-0.048] unit increase	Affymetrix [321114] (imputed)	N
1146	chr4	73574141	73574142	rs190671241	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Total cholesterol levels in small LDL	8,372 Finnish ancestry males	NA	4q13.3	ADAMTS3	rs190671241-?	NR	4E-10	(conditioned on 885 SNPs)	0.6	unit increase	Illumina [15144991] (imputed)	N
1146	chr4	73574141	73574142	rs190671241	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Total cholesterol levels in medium LDL	8,372 Finnish ancestry males	NA	4q13.3	ADAMTS3	rs190671241-?	NR	8E-9	(conditioned on 885 SNPs)	0.5	unit increase	Illumina [15144991] (imputed)	N
1146	chr4	73574141	73574142	rs190671241	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Total cholesterol levels in large LDL	8,372 Finnish ancestry males	NA	4q13.3	ADAMTS3	rs190671241-?	NR	4E-8	(conditioned on 885 SNPs)	0.5	unit increase	Illumina [15144991] (imputed)	N
1146	chr4	73574141	73574142	rs190671241	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Total cholesterol levels in LDL	8,372 Finnish ancestry males	NA	4q13.3	ADAMTS3	rs190671241-?	NR	2E-11		0.416	unit increase	Illumina [15144991] (imputed)	N
1146	chr4	73574141	73574142	rs190671241	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Small LDL particle concentration	8,372 Finnish ancestry males	NA	4q13.3	ADAMTS3	rs190671241-?	NR	4E-20		0.57	unit increase	Illumina [15144991] (imputed)	N
1146	chr4	73574141	73574142	rs190671241	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Serum total cholesterol levels	8,372 Finnish ancestry males	NA	4q13.3	ADAMTS3	rs190671241-?	NR	1E-14		0.48	unit increase	Illumina [15144991] (imputed)	N
1146	chr4	73574141	73574142	rs190671241	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Medium LDL particle concentration	8,372 Finnish ancestry males	NA	4q13.3	ADAMTS3	rs190671241-?	NR	3E-9	(conditioned on 885 SNPs)	0.5	unit increase	Illumina [15144991] (imputed)	N
1146	chr4	73574141	73574142	rs190671241	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Large LDL particle concentration	8,372 Finnish ancestry males	NA	4q13.3	ADAMTS3	rs190671241-?	NR	3E-8	(conditioned on 885 SNPs)	0.5	unit increase	Illumina [15144991] (imputed)	N
1146	chr4	73574141	73574142	rs190671241	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Cholesterol ester levels in medium LDL	8,372 Finnish ancestry males	NA	4q13.3	ADAMTS3	rs190671241-?	NR	6E-9	(conditioned on 885 SNPs)	0.5	unit increase	Illumina [15144991] (imputed)	N
1146	chr4	73574141	73574142	rs190671241	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Cholesterol ester levels in large LDL	8,372 Finnish ancestry males	NA	4q13.3	ADAMTS3	rs190671241-?	NR	4E-8	(conditioned on 885 SNPs)	0.5	unit increase	Illumina [15144991] (imputed)	N
1146	chr4	73630369	73630370	rs79614727	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	4q13.3	NR	rs79614727-T	NR	6E-12		0.0319	[0.023-0.041] unit decrease	Affymetrix [9000000] (imputed)	N
1146	chr4	73645350	73645351	rs12507628	22916037	Inouye M	2012-08-16	PLoS Genet	Novel Loci for metabolic networks and multi-tissue expression studies reveal genes for atherosclerosis.	Metabolite levels	6,608 European ancestry individuals	NA	4q13.3	ADAMTS3	rs12507628-?	0.18	3E-9				Illumina [~ 2000000] (imputed)	N
1147	chr4	73668827	73668828	rs77645768	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Total cholesterol levels in small LDL	8,372 Finnish ancestry males	NA	4q13.3	U4atac	rs77645768-?	NR	4E-8	(conditioned on 885 SNPs)	0.4	unit increase	Illumina [15144991] (imputed)	N
1147	chr4	73668827	73668828	rs77645768	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Small LDL particle concentration	8,372 Finnish ancestry males	NA	4q13.3	U4atac	rs77645768-?	NR	2E-9	(conditioned on 885 SNPs)	0.4	unit increase	Illumina [15144991] (imputed)	N
1147	chr4	73709922	73709923	rs72661006	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Hippocampal volume in mild cognitive impairment	581 European ancestry mild cognitive impairment cases	NA	4q13.3	RNU6ATAC5P, ADAMTS3	rs72661006-T	0.055	3E-7		0.7	[0.43-0.97] unit decrease	Illumina [7938386] (imputed)	N
1147	chr4	73742416	73742417	rs114799463	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Cardio-cerebrovascular disease in hypertension	1,185 Korean ancestry cases, 15,117 Korean ancestry controls	NA	4q13.3		rs114799463-T	0.01216	1E-6		2.041	[1.534-2.714]	Affymetrix [7975321] (imputed)	N
1147	chr4	73748658	73748659	rs546498715	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Total cholesterol levels in small LDL	8,372 Finnish ancestry males	NA	4q13.3	U4atac	rs546498715-?	NR	4E-11	(conditioned on 885 SNPs)	0.6	unit increase	Illumina [15144991] (imputed)	N
1147	chr4	73748658	73748659	rs546498715	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Total cholesterol levels in medium LDL	8,372 Finnish ancestry males	NA	4q13.3	U4atac	rs546498715-?	NR	1E-9	(conditioned on 885 SNPs)	0.5	unit increase	Illumina [15144991] (imputed)	N
1147	chr4	73748658	73748659	rs546498715	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Total cholesterol levels in large LDL	8,372 Finnish ancestry males	NA	4q13.3	U4atac	rs546498715-?	NR	8E-9	(conditioned on 885 SNPs)	0.5	unit increase	Illumina [15144991] (imputed)	N
1147	chr4	73748658	73748659	rs546498715	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Small LDL particle concentration	8,372 Finnish ancestry males	NA	4q13.3	U4atac	rs546498715-?	NR	1E-21		0.591	unit increase	Illumina [15144991] (imputed)	N
1147	chr4	73748658	73748659	rs546498715	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Serum total cholesterol levels	8,372 Finnish ancestry males	NA	4q13.3	U4atac	rs546498715-?	NR	3E-16		0.505	unit increase	Illumina [15144991] (imputed)	N
1147	chr4	73748658	73748659	rs546498715	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Medium LDL particle concentration	8,372 Finnish ancestry males	NA	4q13.3	U4atac	rs546498715-?	NR	4E-10	(conditioned on 885 SNPs)	0.5	unit increase	Illumina [15144991] (imputed)	N
1147	chr4	73748658	73748659	rs546498715	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Large LDL particle concentration	8,372 Finnish ancestry males	NA	4q13.3	U4atac	rs546498715-?	NR	5E-9	(conditioned on 885 SNPs)	0.5	unit increase	Illumina [15144991] (imputed)	N
1147	chr4	73748658	73748659	rs546498715	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Free cholesterol levels in large LDL	8,372 Finnish ancestry males	NA	4q13.3	U4atac	rs546498715-?	NR	2E-8	(conditioned on 885 SNPs)	0.5	unit increase	Illumina [15144991] (imputed)	N
1147	chr4	73748658	73748659	rs546498715	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Free cholesterol levels	8,372 Finnish ancestry males	NA	4q13.3	U4atac	rs546498715-?	NR	3E-8	(conditioned on 885 SNPs)	0.5	unit increase	Illumina [15144991] (imputed)	N
1147	chr4	73748658	73748659	rs546498715	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Esterified cholesterol levels	8,372 Finnish ancestry males	NA	4q13.3	U4atac	rs546498715-?	NR	7E-9	(conditioned on 885 SNPs)	0.5	unit increase	Illumina [15144991] (imputed)	N
1147	chr4	73748658	73748659	rs546498715	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Cholesterol ester levels in medium LDL	8,372 Finnish ancestry males	NA	4q13.3	U4atac	rs546498715-?	NR	8E-10	(conditioned on 885 SNPs)	0.5	unit increase	Illumina [15144991] (imputed)	N
1147	chr4	73748658	73748659	rs546498715	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Cholesterol ester levels in large LDL	8,372 Finnish ancestry males	NA	4q13.3	U4atac	rs546498715-?	NR	8E-9	(conditioned on 885 SNPs)	0.5	unit increase	Illumina [15144991] (imputed)	N
1147	chr4	73749418	73749419	rs143424675	31070104	Jia Q	2019-05-09	J Am Heart Assoc	Genetic Determinants of Circulating Glycine Levels and Risk of Coronary Artery Disease.	Glycine levels	30,118 European ancestry individuals	NA	4q13.3	COX18, ADAMTS3	rs143424675-T	0.028306	7E-13		0.185475	[0.13-0.24] unit increase	Affymetrix, Illumina [7487927] (imputed)	N
1147	chr4	73749418	73749419	rs143424675	31070104	Jia Q	2019-05-09	J Am Heart Assoc	Genetic Determinants of Circulating Glycine Levels and Risk of Coronary Artery Disease.	Glycine levels	19,112 European ancestry male individuals	NA	4q13.3	COX18, ADAMTS3	rs143424675-T	0.028306	1E-11		0.212665	[0.15-0.27] unit increase	Affymetrix, Illumina [7487927] (imputed)	N
1147	chr4	73768621	73768622	rs181948526	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Total cholesterol levels in small LDL	8,372 Finnish ancestry males	NA	4q13.3	U4atac	rs181948526-?	NR	4E-11	(conditioned on 885 SNPs)	0.6	unit increase	Illumina [15144991] (imputed)	N
1147	chr4	73768621	73768622	rs181948526	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Total cholesterol levels in medium LDL	8,372 Finnish ancestry males	NA	4q13.3	U4atac	rs181948526-?	NR	1E-9	(conditioned on 885 SNPs)	0.5	unit increase	Illumina [15144991] (imputed)	N
1147	chr4	73768621	73768622	rs181948526	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Total cholesterol levels in large LDL	8,372 Finnish ancestry males	NA	4q13.3	U4atac	rs181948526-?	NR	8E-9	(conditioned on 885 SNPs)	0.5	unit increase	Illumina [15144991] (imputed)	N
1147	chr4	73768621	73768622	rs181948526	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Total cholesterol levels in LDL	8,372 Finnish ancestry males	NA	4q13.3	U4atac	rs181948526-?	NR	9E-13		0.443	unit increase	Illumina [15144991] (imputed)	N
1147	chr4	73768621	73768622	rs181948526	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Small LDL particle concentration	8,372 Finnish ancestry males	NA	4q13.3	U4atac	rs181948526-?	NR	2E-11	(conditioned on 885 SNPs)	0.6	unit increase	Illumina [15144991] (imputed)	N
1147	chr4	73768621	73768622	rs181948526	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Medium LDL particle concentration	8,372 Finnish ancestry males	NA	4q13.3	U4atac	rs181948526-?	NR	5E-10	(conditioned on 885 SNPs)	0.5	unit increase	Illumina [15144991] (imputed)	N
1147	chr4	73768621	73768622	rs181948526	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Large LDL particle concentration	8,372 Finnish ancestry males	NA	4q13.3	U4atac	rs181948526-?	NR	5E-9	(conditioned on 885 SNPs)	0.5	unit increase	Illumina [15144991] (imputed)	N
1147	chr4	73768621	73768622	rs181948526	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Free cholesterol levels in large LDL	8,372 Finnish ancestry males	NA	4q13.3	U4atac	rs181948526-?	NR	2E-8	(conditioned on 885 SNPs)	0.5	unit increase	Illumina [15144991] (imputed)	N
1147	chr4	73768621	73768622	rs181948526	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Free cholesterol levels	8,372 Finnish ancestry males	NA	4q13.3	U4atac	rs181948526-?	NR	3E-8	(conditioned on 885 SNPs)	0.5	unit increase	Illumina [15144991] (imputed)	N
1147	chr4	73768621	73768622	rs181948526	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Esterified cholesterol levels	8,372 Finnish ancestry males	NA	4q13.3	U4atac	rs181948526-?	NR	8E-9	(conditioned on 885 SNPs)	0.5	unit increase	Illumina [15144991] (imputed)	N
1147	chr4	73768621	73768622	rs181948526	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Cholesterol ester levels in medium LDL	8,372 Finnish ancestry males	NA	4q13.3	U4atac	rs181948526-?	NR	8E-10	(conditioned on 885 SNPs)	0.5	unit increase	Illumina [15144991] (imputed)	N
1147	chr4	73768621	73768622	rs181948526	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Cholesterol ester levels in large LDL	8,372 Finnish ancestry males	NA	4q13.3	U4atac	rs181948526-?	NR	8E-9	(conditioned on 885 SNPs)	0.5	unit increase	Illumina [15144991] (imputed)	N
1147	chr4	73770689	73770690	rs1346132	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Cardio-cerebrovascular disease in dyslipidemia	1,039 Korean ancestry cases, 19,727 Korean ancestry controls	NA	4q13.3		rs1346132-G	0.01539	3E-6		1.971	[1.485-2.614]	Affymetrix [7975321] (imputed)	N
1147	chr4	73779945	73779946	rs34188544	29077507	Chen H	2017-10-27	Am J Respir Cell Mol Biol	Multi-ethnic Meta-analysis Identifies RAI1 as a Possible Obstructive Sleep Apnea Related Quantitative Trait Locus in Men.	Obstructive sleep apnea trait (apnea hypopnea index)	677 African American women, 544 African American men, 115 Asian women, 113 Asian men, 1,825 European ancestry women, 3,902 European ancestry men,  7,492 Hispanic women, 5,065 Hispanic men	NA	4q13.3	Intergenic	rs34188544-G		4E-7		0.522	[NR] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1147	chr4	73779945	73779946	rs34188544	29077507	Chen H	2017-10-27	Am J Respir Cell Mol Biol	Multi-ethnic Meta-analysis Identifies RAI1 as a Possible Obstructive Sleep Apnea Related Quantitative Trait Locus in Men.	Obstructive sleep apnea trait (apnea hypopnea index)	677 African American women, 544 African American men, 115 Asian women, 113 Asian men, 1,825 European ancestry women, 3,902 European ancestry men,  7,492 Hispanic women, 5,065 Hispanic men	NA	4q13.3	Intergenic	rs34188544-G		2E-6	(men)	0.728	[NR] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1147	chr4	73783403	73783404	rs6816344	21546767	Murea M	2011-05-05	Am J Nephrol	Genome-wide association scan for survival on dialysis in African-Americans with type 2 diabetes.	Dialysis-related mortality	610 African American type 2 diabetes cases	NA	4q13.3	COX18, ADAMTS3	rs6816344-?	0.49	1E-6		1.7	[1.37-2.12]	Affymetrix [832357]	N
1147	chr4	73792038	73792039	rs112255470	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	4q13.3	NR	rs112255470-G	NR	2E-14		0.0345	[0.026-0.043] unit decrease	Affymetrix [9000000] (imputed)	N
1148	chr4	73814425	73814426	rs116495073	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Hippocampal volume	305 European ancestry cognitively normal individuals, 581 European ancestry mild cognitive impairment cases, 190 European ancestry Alzheimer's disease dementia cases	NA	4q13.3	ADAMTS3, RNU6ATAC5P	rs116495073-A	0.02	2E-6		1.12	[0.65-1.59] unit decrease	Illumina [8056701] (imputed)	N
1148	chr4	73829473	73829474	rs185596670	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	4q13.3	NR	rs185596670-?	NR	2E-13	(CXCL10)	2.59819	[1.9-3.29] unit increase	Illumina [11901634] (imputed)	N
1148	chr4	73855252	73855253	rs10009409	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	4q13.3	NR	rs10009409-T	0.31	4E-10		1.06	[1.04-1.08]	Illumina [20370935] (imputed)	N
1148	chr4	73855252	73855253	rs10009409	25217961	Al Olama AA	2014-09-14	Nat Genet	A meta-analysis of 87,040 individuals identifies 23 new susceptibility loci for prostate cancer.	Prostate cancer	34,379 European ancestry cases, 33,164 European ancestry controls, 5,327 African ancestry cases, 5,136 African ancestry controls, 2,563 Japanese ancestry cases, 4,391 Japanese ancestry controls, 1,034 Latino cases, 1,046 Latino controls	NA	4q13.3	COX18	rs10009409-T	0.32	2E-10	(EA)	1.09	[1.06-1.12]	Affymetrix, Illumina [up to 16852405] (imputed)	N
1148	chr4	73855252	73855253	rs10009409	25217961	Al Olama AA	2014-09-14	Nat Genet	A meta-analysis of 87,040 individuals identifies 23 new susceptibility loci for prostate cancer.	Prostate cancer	34,379 European ancestry cases, 33,164 European ancestry controls, 5,327 African ancestry cases, 5,136 African ancestry controls, 2,563 Japanese ancestry cases, 4,391 Japanese ancestry controls, 1,034 Latino cases, 1,046 Latino controls	NA	4q13.3	COX18	rs10009409-T	0.32	2E-10		1.08	[1.05-1.10]	Affymetrix, Illumina [up to 16852405] (imputed)	N
1148	chr4	73880049	73880050	rs62309628	30576415	Gilly A	2019-08-01	Bioinformatics	Very low-depth whole-genome sequencing in complex trait association studies.	Hormone measurements	1,225 Mylopotamos (founder/genetic isolate) individuals	NA	4q13.3	intergenic	rs62309628-?	NR	1E-7	(adiponectin)	0.3	[0.18-0.42] unit decrease	Illumina [14948665] (imputed)	N
1149	chr4	73970463	73970464	rs6818964	24556642	Zeng Z	2014-02-18	Caries Res	Genome-wide association study of primary dentition pit-and-fissure and smooth surface caries.	Smooth-surface caries	1006 European ancestry individuals	NA	4q13.3	ANKRD17	rs6818964-T	0.022	7E-7		5.63	[NR] unit increase	Illumina [1216189] (imputed)	N
1149	chr4	73985596	73985597	rs13143112	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	4q13.3	COX18	rs13143112-?	NR	8E-6	(LPE 16:0)	0.65952796	[0.37-0.95] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1149	chr4	74033563	74033564	rs187918276	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	4q13.3	ANKRD17	rs187918276-C	3.41999999999953E-4	6E-9		0.39182505	[0.26-0.52] unit increase	Affymetrix [93095623] (imputed)	N
1149	chr4	74033563	74033564	rs187918276	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	4q13.3	ANKRD17	rs187918276-C	3.41999999999953E-4	1E-9		0.41081727	[0.28-0.54] unit increase	Affymetrix [93095623] (imputed)	N
1149	chr4	74033563	74033564	rs187918276	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Total cholesterol levels in small LDL	8,372 Finnish ancestry males	NA	4q13.3	ANKRD17	rs187918276-?	NR	5E-11	(conditioned on 885 SNPs)	0.6	unit increase	Illumina [15144991] (imputed)	N
1149	chr4	74033563	74033564	rs187918276	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Total cholesterol levels in medium LDL	8,372 Finnish ancestry males	NA	4q13.3	ANKRD17	rs187918276-?	NR	2E-9	(conditioned on 885 SNPs)	0.5	unit increase	Illumina [15144991] (imputed)	N
1149	chr4	74033563	74033564	rs187918276	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Total cholesterol levels in large LDL	8,372 Finnish ancestry males	NA	4q13.3	ANKRD17	rs187918276-?	NR	1E-8	(conditioned on 885 SNPs)	0.5	unit increase	Illumina [15144991] (imputed)	N
1149	chr4	74033563	74033564	rs187918276	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Total cholesterol levels in LDL	8,372 Finnish ancestry males	NA	4q13.3	ALB	rs187918276-?	NR	3E-13		0.452	unit increase	Illumina [15144991] (imputed)	N
1149	chr4	74033563	74033564	rs187918276	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Small LDL particle concentration	8,372 Finnish ancestry males	NA	4q13.3	ALB	rs187918276-?	NR	7E-22		0.596	unit increase	Illumina [15144991] (imputed)	N
1149	chr4	74033563	74033564	rs187918276	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Serum total cholesterol levels	8,372 Finnish ancestry males	NA	4q13.3	ALB	rs187918276-?	NR	1E-16		0.514	unit increase	Illumina [15144991] (imputed)	N
1149	chr4	74033563	74033564	rs187918276	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Medium LDL particle concentration	8,372 Finnish ancestry males	NA	4q13.3	ANKRD17	rs187918276-?	NR	6E-10	(conditioned on 885 SNPs)	0.5	unit increase	Illumina [15144991] (imputed)	N
1149	chr4	74033563	74033564	rs187918276	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Large LDL particle concentration	8,372 Finnish ancestry males	NA	4q13.3	ANKRD17	rs187918276-?	NR	5E-9	(conditioned on 885 SNPs)	0.5	unit increase	Illumina [15144991] (imputed)	N
1149	chr4	74033563	74033564	rs187918276	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Free cholesterol levels in large LDL	8,372 Finnish ancestry males	NA	4q13.3	ANKRD17	rs187918276-?	NR	2E-8	(conditioned on 885 SNPs)	0.5	unit increase	Illumina [15144991] (imputed)	N
1149	chr4	74033563	74033564	rs187918276	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Esterified cholesterol levels	8,372 Finnish ancestry males	NA	4q13.3	ANKRD17	rs187918276-?	NR	6E-9	(conditioned on 885 SNPs)	0.5	unit increase	Illumina [15144991] (imputed)	N
1149	chr4	74033563	74033564	rs187918276	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Cholesterol ester levels in medium LDL	8,372 Finnish ancestry males	NA	4q13.3	ANKRD17	rs187918276-?	NR	1E-9	(conditioned on 885 SNPs)	0.5	unit increase	Illumina [15144991] (imputed)	N
1149	chr4	74033563	74033564	rs187918276	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Cholesterol ester levels in large LDL	8,372 Finnish ancestry males	NA	4q13.3	ANKRD17	rs187918276-?	NR	1E-8	(conditioned on 885 SNPs)	0.5	unit increase	Illumina [15144991] (imputed)	N
1149	chr4	74055497	74055498	rs56261590	29855537	Hirata T	2018-05-31	Sci Rep	Japanese GWAS identifies variants for bust-size, dysmenorrhea, and menstrual fever that are eQTLs for relevant protein-coding or long non-coding RNAs.	Menstruation quality of life impact (pressure in breast)	642 Japanese ancestry female cases, 5,092 Japanese ancestry female controls	667 Japanese ancestry female cases, 4,947 Japanese ancestry female controls	4q13.3	NR	rs56261590-A	0.323082228	2E-6		0.22040759	[0.13-0.31] unit decrease	Affymetrix [536506]	N
1150	chr4	74173714	74173715	rs6829551	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q13.3	AFP	rs6829551-T	0.8115625	2E-9	(AFP, 5792_8_2)	0.18736865	[0.13-0.25] unit increase	Illumina [> 1000000] (imputed)	N
1150	chr4	74177396	74177397	rs72663045	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	4q13.3	NR	rs72663045-G	NR	4E-9		0.0503	[0.033-0.067] unit increase	Affymetrix [9000000] (imputed)	N
1150	chr4	74177396	74177397	rs72663045	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	4q13.3	NR	rs72663045-T	0.97928	6E-7		0.0367565	[0.022-0.051] unit decrease	Affymetrix [NR] (imputed)	N
1150	chr4	74177396	74177397	rs72663045	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	4q13.3	ANKRD17	rs72663045-T	0.97928	8E-9		0.042351	[0.028-0.057] unit decrease	Affymetrix [NR] (imputed)	N
1151	chr4	74220748	74220749	rs78716942	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	C-X-C motif chemokine 1 levels	21,758 European ancestry individuals	9,173 individuals	4q13.3		rs78716942-A	0.1	4E-15		0.1227	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1151	chr4	74222781	74222782	rs55881006	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Albumin levels	115,064 European ancestry individuals	NA	4q13.3		rs55881006-G	0.966218	1E-8		0.0650174	[0.043-0.087] unit increase	NR [11722792] (imputed)	N
1151	chr4	74272435	74272437	rs75152012	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Serum albumin levels	400,938 European ancestry individuals	NA	4q13.3		rs75152012-?	NR	7E-23		1.82685	[1.46-2.2] unit decrease	NR [9800000] (imputed)	N
1151	chr4	74274362	74274363	rs142714816	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	4q13.3		rs142714816-G	NR	4E-18		0.3941	[0.31-0.48] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
1151	chr4	74274362	74274363	rs142714816	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Serum albumin levels	400,938 European ancestry individuals	NA	4q13.3		rs142714816-?	NR	2E-10		0.2603	[0.18-0.34] unit decrease	NR [9800000] (imputed)	N
1151	chr4	74274362	74274363	rs142714816	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Calcium levels	400,792 European ancestry individuals	NA	4q13.3		rs142714816-?	NR	5E-27		0.424881	[0.34-0.51] unit decrease	NR [9800000] (imputed)	N
1151	chr4	74274362	74274363	rs142714816	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Bilirubin levels	436,055 European ancestry individuals	NA	4q13.3		rs142714816-?	NR	5E-12		0.23038	[0.16-0.3] unit increase	NR [9800000] (imputed)	N
1151	chr4	74274362	74274363	rs142714816	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	4q13.3	NR	rs142714816-G	NR	7E-15		0.4041	[0.3-0.51] unit decrease	Affymetrix [9000000] (imputed)	N
1151	chr4	74275117	74275118	rs267600247	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Direct bilirubin levels	372,420 European ancestry individuals	NA	4q13.3		rs267600247-?	NR	8E-14		1.56082	[1.13-1.99] unit increase	NR [9800000] (imputed)	N
1151	chr4	74275117	74275118	rs267600247	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Bilirubin levels	436,055 European ancestry individuals	NA	4q13.3		rs267600247-?	NR	5E-13		1.39699	[0.99-1.8] unit increase	NR [9800000] (imputed)	N
1151	chr4	74275119	74275120	rs149432908	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	4q13.3		rs149432908-T	NR	1E-42		0.548	[0.47-0.63] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
1151	chr4	74285239	74285240	rs78284052	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Serum albumin levels	400,938 European ancestry individuals	NA	4q13.3		rs78284052-?	NR	1E-8		0.272194	[0.18-0.37] unit decrease	NR [9800000] (imputed)	N
1152	chr4	74319282	74319283	rs12506899	23300138	He M	2013-01-07	Gut	A genome wide association study of genetic loci that influence tumour biomarkers cancer antigen 19-9, carcinoembryonic antigen and ? fetoprotein and their associations with cancer risk.	Tumor biomarkers	3,451 Han Chinese ancestry individuals	10,326 Chinese ancestry individuals	4q13.3	AFP	rs12506899-G	0.32	3E-18	(AFP)	0.065	[0.032-0.098] ng/ml decrease	Affymetrix, Illumina [NR] (imputed)	N
1152	chr4	74321779	74321780	rs75738725	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	120,539 East Asian ancestry individuals	NA	4q13.3		rs75738725-C	0.029962	4E-9		0.0770273	[0.051-0.103] unit decrease	Illumina [13474682] (imputed)	N
1152	chr4	74343767	74343768	rs72853185	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein AFM	5,360 Icelandic ancestry individuals	NA	4q13.3		rs72853185-G	0.0137	4E-20		0.747962	[0.59-0.91] unit decrease	Illumina [7506463] (imputed)	N
1152	chr4	74349157	74349158	rs1894292	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	4q13.3	NR	rs1894292-G	0.52	5E-15		1.06	[1.05-1.08]	Illumina [20370935] (imputed)	N
1152	chr4	74349157	74349158	rs1894292	23535732	Eeles RA	2013-04-01	Nat Genet	Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array.	Prostate cancer	11,085 European ancestry cases, 11,463 European ancestry controls	19,662 European ancestry cases, 19,715 European ancestry controls	4q13.3	COX18, AFM, RASSF6, ALB, AFP, ANKRD17, LOC72804, LOC728040	rs1894292-G	0.52	5E-13		1.1	[1.06-1.12]	Illumina [~ 2600000] (imputed)	N
1152	chr4	74358276	74358277	rs12510870	29109912	Rawofi L	2017-11-02	PeerJ	Genome-wide association study of pigmentary traits (skin and iris color) in individuals of East Asian ancestry.	Iris color (b* coordinate)	377 East Asian ancestry individuals	NA	4q13.3	AFM	rs12510870-C	0.19	4E-7		0.495853	[0.31-0.68] unit decrease	Illumina [at least 520076] (imputed)	N
1152	chr4	74361141	74361142	rs41265665	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	4q13.3	AFM, RASSF6, RP11-622A1.2, RP11-622A1.1	rs41265665-A	0.03235592	3E-12	(Afamin)	0.8615	[0.62-1.1] unit decrease	Affymetrix [509946]	N
1152	chr4	74377738	74377739	rs1919480	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q13.3	AFM	rs1919480-C	0.98546875	3E-14	(AFM, 4763_31_3)	0.7743897	[0.58-0.97] unit increase	Illumina [> 1000000] (imputed)	N
1152	chr4	74388163	74388164	rs113759232	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Total cholesterol levels in small LDL	8,372 Finnish ancestry males	NA	4q13.3	RP11-622A1.2	rs113759232-?	NR	4E-8	(conditioned on 885 SNPs)	0.6	unit increase	Illumina [15144991] (imputed)	N
1152	chr4	74388163	74388164	rs113759232	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Total cholesterol levels in LDL	8,372 Finnish ancestry males	NA	4q13.3	RP11-622A1.2	rs113759232-?	NR	2E-11		0.531	unit increase	Illumina [15144991] (imputed)	N
1152	chr4	74388163	74388164	rs113759232	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Small LDL particle concentration	8,372 Finnish ancestry males	NA	4q13.3	RP11-622A1.2	rs113759232-?	NR	2E-18		0.688	unit increase	Illumina [15144991] (imputed)	N
1152	chr4	74388163	74388164	rs113759232	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Serum total cholesterol levels	8,372 Finnish ancestry males	NA	4q13.3	RP11-622A1.2	rs113759232-?	NR	5E-15		0.615	unit increase	Illumina [15144991] (imputed)	N
1152	chr4	74442348	74442349	rs17804499	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 91,972 European ancestry controls	6,852 European ancestry cases, 193,117 European ancestry controls	4q13.3	NR	rs17804499-G	0.941437877	2E-7		1.2286369	[1.14-1.33]	Affymetrix, Illumina [20400945] (imputed)	N
1152	chr4	74442348	74442349	rs17804499	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	4q13.3	NR	rs17804499-G	NR	4E-26		1.214	[1.17-1.26]	Affymetrix, Illumina [29235255] (imputed)	N
1152	chr4	74442348	74442349	rs17804499	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	4q13.3		rs17804499-?	NR	8E-11				NR [~ 8900000] (imputed)	N
1153	chr4	74477134	74477135	rs13142786	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	4q13.3	NR	rs13142786-T	NR	9E-24		1.071	[1.06-1.08]	Affymetrix, Illumina [29235255] (imputed)	N
1153	chr4	74512279	74512280	rs573930512	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Total cholesterol levels in small LDL	8,372 Finnish ancestry males	NA	4q13.3	RASSF6	rs573930512-?	NR	6E-10	(conditioned on 885 SNPs)	0.6	unit increase	Illumina [15144991] (imputed)	N
1153	chr4	74512279	74512280	rs573930512	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Total cholesterol levels in medium LDL	8,372 Finnish ancestry males	NA	4q13.3	RASSF6	rs573930512-?	NR	9E-9	(conditioned on 885 SNPs)	0.5	unit increase	Illumina [15144991] (imputed)	N
1153	chr4	74512279	74512280	rs573930512	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Total cholesterol levels in large LDL	8,372 Finnish ancestry males	NA	4q13.3	RASSF6	rs573930512-?	NR	3E-8	(conditioned on 885 SNPs)	0.5	unit increase	Illumina [15144991] (imputed)	N
1153	chr4	74512279	74512280	rs573930512	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Total cholesterol levels in LDL	8,372 Finnish ancestry males	NA	4q13.3	RASSF6	rs573930512-?	NR	8E-12		0.438	unit increase	Illumina [15144991] (imputed)	N
1153	chr4	74512279	74512280	rs573930512	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Small LDL particle concentration	8,372 Finnish ancestry males	NA	4q13.3	RASSF6	rs573930512-?	NR	3E-20		0.59	unit increase	Illumina [15144991] (imputed)	N
1153	chr4	74512279	74512280	rs573930512	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Serum total cholesterol levels	8,372 Finnish ancestry males	NA	4q13.3	RASSF6	rs573930512-?	NR	2E-14		0.488	unit increase	Illumina [15144991] (imputed)	N
1153	chr4	74512279	74512280	rs573930512	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Medium LDL particle concentration	8,372 Finnish ancestry males	NA	4q13.3	RASSF6	rs573930512-?	NR	3E-9	(conditioned on 885 SNPs)	0.6	unit increase	Illumina [15144991] (imputed)	N
1153	chr4	74512279	74512280	rs573930512	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Large LDL particle concentration	8,372 Finnish ancestry males	NA	4q13.3	RASSF6	rs573930512-?	NR	1E-8	(conditioned on 885 SNPs)	0.5	unit increase	Illumina [15144991] (imputed)	N
1153	chr4	74512279	74512280	rs573930512	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Free cholesterol levels in large LDL	8,372 Finnish ancestry males	NA	4q13.3	RASSF6	rs573930512-?	NR	4E-8	(conditioned on 885 SNPs)	0.5	unit increase	Illumina [15144991] (imputed)	N
1153	chr4	74512279	74512280	rs573930512	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Cholesterol ester levels in medium LDL	8,372 Finnish ancestry males	NA	4q13.3	RASSF6	rs573930512-?	NR	5E-9	(conditioned on 885 SNPs)	0.5	unit increase	Illumina [15144991] (imputed)	N
1153	chr4	74512279	74512280	rs573930512	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Cholesterol ester levels in large LDL	8,372 Finnish ancestry males	NA	4q13.3	RASSF6	rs573930512-?	NR	3E-8	(conditioned on 885 SNPs)	0.5	unit increase	Illumina [15144991] (imputed)	N
1154	chr4	74589596	74589597	rs7655660	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Interleukin-8 levels	21,758 European ancestry individuals	9,173 individuals	4q13.3		rs7655660-A	0.068	9E-17		0.1771	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1154	chr4	74594257	74594258	rs115114874	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	4q13.3	NR	rs115114874-T	NR	1E-13		0.0702	[0.052-0.089] unit decrease	Affymetrix [9000000] (imputed)	N
1154	chr4	74607284	74607285	rs188378669	30402224	Yamada Y	2018-09-17	Biomed Rep	Identification of 26 novel loci that confer susceptibility to early-onset coronary artery disease in a Japanese population.	Coronary artery disease	1,482 Japanese ancestry cases, 5,774 Japanese ancestry controls	NA	4q13.3	CXCL8	rs188378669-G	0.988	3E-29		33.333336		Illumina [up to 244000]	N
1154	chr4	74607284	74607285	rs188378669	30226566	Yamada Y	2018-09-04	Int J Mol Med	Identification of 13 novel susceptibility loci for early-onset myocardial infarction, hypertension, or chronic kidney disease.	Myocardial infarction	1,152 Japanese ancestry cases, 5,774 Japanese ancestry controls	NA	4q13.3	CXCL8	rs188378669-G		1E-25		100.0		Illumina [31245]	N
1154	chr4	74607284	74607285	rs188378669	30226566	Yamada Y	2018-09-04	Int J Mol Med	Identification of 13 novel susceptibility loci for early-onset myocardial infarction, hypertension, or chronic kidney disease.	Hypertension	3,444 Japanese ancestry cases, 4,636 Japanese ancestry controls	NA	4q13.3	CXCL8	rs188378669-G	0.988	7E-7		1.7857143		Illumina [31276]	N
1154	chr4	74607284	74607285	rs188378669	30226566	Yamada Y	2018-09-04	Int J Mol Med	Identification of 13 novel susceptibility loci for early-onset myocardial infarction, hypertension, or chronic kidney disease.	Chronic kidney disease	1,051 Japanese ancestry cases, 1,505 Japanese ancestry controls	NA	4q13.3	CXCL8	rs188378669-G	0.988	8E-8		4.347826		Illumina [31514]	N
1154	chr4	74607284	74607285	rs188378669	29930801	Yamada Y	2018-05-29	Biomed Rep	Identification of nine genes as novel susceptibility loci for early-onset ischemic stroke, intracerebral hemorrhage, or subarachnoid hemorrhage.	Ischemic stroke	450 Japanese ancestry cases, 5,774 Japanese ancestry controls	NA	4q13.3	CXCL8	rs188378669-G	0.088	6E-9		14.285714		Illumina [31245]	N
1154	chr4	74607909	74607910	rs2227543	32641083	Hillary RF	2020-07-08	Genome Med	Multi-method genome- and epigenome-wide studies of inflammatory protein levels in healthy older adults.	CXCL6 levels	982 Scottish ancestry individuals	NA	4q13.3	NR	rs2227543-T	0.43627	3E-17		0.38455	[0.3-0.47] unit increase	Illumina [7903493] (imputed)	N
1154	chr4	74633810	74633811	rs4279174	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q13.3	NR	rs4279174-G	0.57234375	9E-10	(EVA1B, 8062_15_3)	0.14961886	[0.1-0.2] unit decrease	Illumina [> 1000000] (imputed)	N
1154	chr4	74633810	74633811	rs4279174	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q13.3	NR	rs4279174-G	0.57234375	7E-21	(PF4V1, 5663_18_3)	0.22955175	[0.18-0.28] unit decrease	Illumina [> 1000000] (imputed)	N
1154	chr4	74633810	74633811	rs4279174	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q13.3	NR	rs4279174-G	0.57234375	7E-12	(EIF4EBP2, 4184_43_3)	0.16599415	[0.12-0.21] unit decrease	Illumina [> 1000000] (imputed)	N
1154	chr4	74633810	74633811	rs4279174	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q13.3	NR	rs4279174-G	0.57234375	6E-16	(EMC1, 11989_35_3)	0.20193498	[0.15-0.25] unit decrease	Illumina [> 1000000] (imputed)	N
1154	chr4	74633810	74633811	rs4279174	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q13.3	NR	rs4279174-G	0.57234375	3E-28	(SLC3A2, 7056_16_3)	0.2675642	[0.22-0.31] unit decrease	Illumina [> 1000000] (imputed)	N
1154	chr4	74633810	74633811	rs4279174	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q13.3	NR	rs4279174-G	0.57234375	3E-12	(RAB39B, 12403_30_3)	0.1741949	[0.13-0.22] unit decrease	Illumina [> 1000000] (imputed)	N
1154	chr4	74633810	74633811	rs4279174	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q13.3	NR	rs4279174-G	0.57234375	3E-11	(KITLG, 9377_25_3)	0.16150306	[0.11-0.21] unit decrease	Illumina [> 1000000] (imputed)	N
1154	chr4	74633810	74633811	rs4279174	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q13.3	NR	rs4279174-G	0.57234375	2E-130	(CXCL6, 3495_15_2)	0.57342106	[0.53-0.62] unit decrease	Illumina [> 1000000] (imputed)	N
1154	chr4	74633810	74633811	rs4279174	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q13.3	NR	rs4279174-G	0.57234375	2E-13	(ID2, 9426_73_3)	0.17871515	[0.13-0.23] unit decrease	Illumina [> 1000000] (imputed)	N
1154	chr4	74633810	74633811	rs4279174	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q13.3	NR	rs4279174-G	0.57234375	1E-24	(TNFAIP8, 12563_2_3)	0.24952683	[0.2-0.3] unit decrease	Illumina [> 1000000] (imputed)	N
1154	chr4	74638216	74638217	rs6446959	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	4q13.3		rs6446959-G	0.441511	4E-13		0.01621204	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1154	chr4	74646060	74646061	rs72650824	32047095	Traglia M	2020-02-11	Genetics	Genetic Contributions to Maternal and Neonatal Vitamin D Levels.	Neonatal total 25-hydroxyvitamin D levels (maternal genetic effect)	269 European ancestry individuals, 323 Hispanic individuals, 115 East Asian ancestry individuals, 23 African American individuals, 23 South Asian ancestry individuals, 23 individuals	NA	4q13.3	CXCL8-CXCL6	rs72650824-?	NR	7E-7		1.53	[0.94-2.12] unit increase	Affymetrix [629686]	N
1154	chr4	74646246	74646247	rs115368816	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	4q13.3	NR	rs115368816-?	NR	2E-10	(CXCL10)	1.97362	[1.37-2.58] unit increase	Illumina [11901634] (imputed)	N
1154	chr4	74673563	74673564	rs72650832	28369058	Folkersen L	2017-04-03	PLoS Genet	Mapping of 79 loci for 83 plasma protein biomarkers in cardiovascular disease.	Blood protein levels in cardiovascular risk	3,394 European ancestry individuals	2,639 individuals	4q13.3	CXCL6	rs72650832-T	0.65	3E-130		0.53	unit decrease	Illumina [5270624] (imputed)	N
1154	chr4	74701511	74701512	rs62312418	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	4q13.3	CXCL6	rs62312418-A	0.4049	2E-46		0.05272039	[0.045-0.06] unit increase	Affymetrix [~ 2500000] (imputed)	N
1154	chr4	74701511	74701512	rs62312418	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	4q13.3	CXCL6	rs62312418-A	0.4049	5E-32		0.04315252	[0.036-0.05] unit increase	Affymetrix [~ 2500000] (imputed)	N
1154	chr4	74701511	74701512	rs62312418	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	4q13.3	CXCL6	rs62312418-A	0.4048	2E-46		0.05257295	[0.045-0.06] unit increase	Affymetrix [~ 2500000] (imputed)	N
1154	chr4	74701511	74701512	rs62312418	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	4q13.3	CXCL6	rs62312418-A	0.4047	2E-42		0.05054486	[0.043-0.058] unit increase	Affymetrix [~ 2500000] (imputed)	N
1154	chr4	74701511	74701512	rs62312418	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	4q13.3	CXCL6	rs62312418-A	0.4048	4E-24		0.03703704	[0.03-0.044] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1154	chr4	74701511	74701512	rs62312418	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	4q13.3	CXCL6	rs62312418-A	0.4048	8E-45		0.05179471	[0.045-0.059] unit increase	Affymetrix [~ 2500000] (imputed)	N
1154	chr4	74701511	74701512	rs62312418	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of granulocytes	170,223 European ancestry individuals	NA	4q13.3	CXCL6	rs62312418-A	0.4049	7E-12		0.02464693	[0.018-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1154	chr4	74702809	74702809	rs564244632	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	White blood cell count	444,734 European ancestry individuals	NA	4q13.3		rs564244632-?	NR	3E-22		0.108026	[0.085-0.131] unit decrease	NR [9800000] (imputed)	N
1154	chr4	74702809	74702809	rs564244632	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Neutrophil count	443,782 European ancestry individuals	NA	4q13.3		rs564244632-?	NR	7E-32		0.134644	[0.11-0.16] unit decrease	NR [9800000] (imputed)	N
1154	chr4	74702809	74702809	rs564244632	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	4q13.3	CXCL6	rs564244632-GT	0.00746000000000002	9E-11		0.08359015	[0.058-0.109] unit decrease	Affymetrix [93095623] (imputed)	N
1154	chr4	74702809	74702809	rs564244632	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	4q13.3	CXCL6	rs564244632-GT	0.00745899999999999	1E-12		0.091286406	[0.066-0.117] unit decrease	Affymetrix [93095623] (imputed)	N
1154	chr4	74702809	74702809	rs564244632	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	4q13.3	CXCL6	rs564244632-GT	0.00746199999999997	5E-9		0.07516284	[0.05-0.1] unit increase	Affymetrix [93095623] (imputed)	N
1154	chr4	74703998	74703999	rs16850073	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	4q13.3		rs16850073-C	0.625	3E-21				Affymetrix [10369434] (imputed)	N
1154	chr4	74703998	74703999	rs16850073	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	4q13.3		rs16850073-C	0.625	6E-38				Affymetrix [10369434] (imputed)	N
1154	chr4	74703998	74703999	rs16850073	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	C-X-C motif chemokine 6 levels	21,758 European ancestry individuals	9,173 individuals	4q13.3		rs16850073-T	0.37	8E-688		0.5708	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1154	chr4	74703998	74703999	rs16850073	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	4q13.3	CXCL6	rs16850073-T	0.375243	5E-69		0.040359892	[0.036-0.045] unit increase	Affymetrix [93095623] (imputed)	N
1154	chr4	74703998	74703999	rs16850073	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	4q13.3	CXCL6	rs16850073-T	0.375285	1E-75		0.042374454	[0.038-0.047] unit increase	Affymetrix [93095623] (imputed)	N
1154	chr4	74703998	74703999	rs16850073	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	4q13.3	CXCL6	rs16850073-T	0.375272	1E-104		0.05500322	[0.05-0.06] unit increase	Affymetrix [93095623] (imputed)	N
1154	chr4	74703998	74703999	rs16850073	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	4q13.3	CXCL6	rs16850073-T	0.375269	3E-28		0.025515465	[0.021-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
1154	chr4	74703998	74703999	rs16850073	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	4q13.3	CXCL6	rs16850073-T	0.375256	2E-57		0.036732424	[0.032-0.041] unit decrease	Affymetrix [93095623] (imputed)	N
1154	chr4	74703998	74703999	rs16850073	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	4q13.3		rs16850073-?	NR	8E-74				NR [~ 8900000] (imputed)	N
1154	chr4	74703998	74703999	rs16850073	30134952	Traglia M	2018-08-22	Genome Med	Cross-genetic determination of maternal and neonatal immune mediators during pregnancy.	Neonatal cytokine/chemokine levels (fetal genetic effect)	764 Hispanic, European, Asian, South Asian or African American individuals	NA	4q13.3	CXCL6	rs16850073-T	0.32	6E-9	(CXCL6)	0.1	[0.061-0.139] unit increase	Affymetrix [622716]	N
1154	chr4	74703998	74703999	rs16850073	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	4q13.3	NR	rs16850073-?	NR	2E-32	(CXCL6)	0.605234	[0.51-0.71] unit increase	Illumina [11901634] (imputed)	N
1154	chr4	74703998	74703999	rs16850073	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	4q13.3	CXCL6	rs16850073-T	0.3765244	1E-97	(C-X-C motif chemokine 6)	0.8877	[0.81-0.96] unit increase	Affymetrix [509946]	N
1154	chr4	74703998	74703999	rs16850073	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	4q13.3	CXCL6	rs16850073-T	0.375	3E-34		0.04534241	[0.038-0.053] unit increase	Affymetrix [~ 2500000] (imputed)	N
1154	chr4	74703998	74703999	rs16850073	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	4q13.3	CXCL6	rs16850073-T	0.3748	2E-45		0.05262755	[0.045-0.06] unit increase	Affymetrix [~ 2500000] (imputed)	N
1154	chr4	74703998	74703999	rs16850073	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	4q13.3	CXCL6	rs16850073-T	0.3749	5E-13		0.02675622	[0.02-0.034] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1154	chr4	74703998	74703999	rs16850073	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	4q13.3	CXCL6	rs16850073-T	0.3749	5E-23		0.03661964	[0.029-0.044] unit increase	Affymetrix [~ 2500000] (imputed)	N
1154	chr4	74704581	74704582	rs1957078	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	4q13.3	CXCL6	rs1957078-A	0.549352	1E-9		0.013616366	[0.0092-0.018] unit increase	Affymetrix [93095623] (imputed)	N
1154	chr4	74707639	74707640	rs12500975	33385171	Hagg S	2020-12-31	Hum Genet	Deciphering the genetic and epidemiological landscape of mitochondrial DNA abundance.	Mitochondrial DNA levels	295,150 European ancestry individuals	NA	4q13.3	NR	rs12500975-C	0.4304	1E-8		0.0149096	[0.0098-0.02] unit decrease	Affymetrix [3505788] (imputed)	N
1154	chr4	74709858	74709859	rs13110736	32641083	Hillary RF	2020-07-08	Genome Med	Multi-method genome- and epigenome-wide studies of inflammatory protein levels in healthy older adults.	CXCL6 levels	982 Scottish ancestry individuals	NA	4q13.3	NR	rs13110736-T	0.54	2E-12		0.39295	[0.28-0.5] unit decrease	Illumina [7903493] (imputed)	N
1155	chr4	74711125	74711126	rs13148728	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	4q13.3	CXCL6	rs13148728-T	0.5515	4E-14		0.0274693	[0.02-0.035] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1155	chr4	74711125	74711126	rs13148728	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	4q13.3	CXCL6	rs13148728-T	0.5514	9E-11		0.02356919	[0.016-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
1155	chr4	74713798	74713799	rs10015342	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	4q13.3	PPBPP1, CXCL6	rs10015342-A	0.148452	6E-10		0.021939717	[0.015-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
1155	chr4	74713934	74713935	rs138723628	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CXCL6	5,354 Icelandic ancestry individuals	NA	4q13.3		rs138723628-G	0.02175	1E-37		0.802583	[0.68-0.93] unit decrease	Illumina [7506463] (imputed)	N
1155	chr4	74713934	74713935	rs138723628	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	C-X-C motif chemokine 6 levels	21,758 European ancestry individuals	9,173 individuals	4q13.3		rs138723628-A	0.99	5E-25		0.591	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1155	chr4	74713949	74713950	rs7658970	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein WISP3	5,362 Icelandic ancestry individuals	NA	4q13.3		rs7658970-T	0.2892	2E-19		0.185318	[0.15-0.23] unit increase	Illumina [7506463] (imputed)	N
1155	chr4	74713949	74713950	rs7658970	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TMCC3	5,366 Icelandic ancestry individuals	NA	4q13.3		rs7658970-T	0.2892	4E-12		0.145066	[0.1-0.19] unit increase	Illumina [7506463] (imputed)	N
1155	chr4	74713949	74713950	rs7658970	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SCGB2A1	5,350 Icelandic ancestry individuals	NA	4q13.3		rs7658970-T	0.2892	7E-37		0.244586	[0.21-0.28] unit increase	Illumina [7506463] (imputed)	N
1155	chr4	74713949	74713950	rs7658970	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RIC3	5,362 Icelandic ancestry individuals	NA	4q13.3		rs7658970-T	0.2892	4E-23		0.198884	[0.16-0.24] unit increase	Illumina [7506463] (imputed)	N
1155	chr4	74713949	74713950	rs7658970	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RELB	5,338 Icelandic ancestry individuals	NA	4q13.3		rs7658970-T	0.2892	1E-17		0.159879	[0.12-0.2] unit increase	Illumina [7506463] (imputed)	N
1155	chr4	74713949	74713950	rs7658970	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PSG5	5,361 Icelandic ancestry individuals	NA	4q13.3		rs7658970-T	0.2892	3E-24		0.207888	[0.17-0.25] unit increase	Illumina [7506463] (imputed)	N
1155	chr4	74713949	74713950	rs7658970	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IFNLR1	5,366 Icelandic ancestry individuals	NA	4q13.3		rs7658970-T	0.2892	1E-18		0.182218	[0.14-0.22] unit increase	Illumina [7506463] (imputed)	N
1155	chr4	74713949	74713950	rs7658970	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	4q13.3	PF4V1	rs7658970-C	0.706	4E-12	(Beta-soluble NSF attachment protein, NAPB.12655.30.3)	0.18	[0.12-0.24] unit decrease	Affymetrix [10572788] (imputed)	N
1155	chr4	74714097	74714098	rs2367288	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TNFAIP8	5,366 Icelandic ancestry individuals	NA	4q13.3		rs2367288-G	0.2896	1E-300		0.691058	[0.65-0.73] unit increase	Illumina [7506463] (imputed)	N
1155	chr4	74714097	74714098	rs2367288	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RAB39B	5,361 Icelandic ancestry individuals	NA	4q13.3		rs2367288-G	0.2896	8E-189		0.550787	[0.51-0.59] unit increase	Illumina [7506463] (imputed)	N
1155	chr4	74714097	74714098	rs2367288	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PGK1	5,343 Icelandic ancestry individuals	NA	4q13.3		rs2367288-G	0.2896	1E-23		0.191327	[0.15-0.23] unit increase	Illumina [7506463] (imputed)	N
1155	chr4	74714097	74714098	rs2367288	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein KPNA4	5,358 Icelandic ancestry individuals	NA	4q13.3		rs2367288-G	0.2896	1E-50		0.29402	[0.26-0.33] unit increase	Illumina [7506463] (imputed)	N
1155	chr4	74714097	74714098	rs2367288	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ID2	5,363 Icelandic ancestry individuals	NA	4q13.3		rs2367288-G	0.2896	1E-206		0.586231	[0.55-0.62] unit increase	Illumina [7506463] (imputed)	N
1155	chr4	74714097	74714098	rs2367288	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein EVA1B	5,364 Icelandic ancestry individuals	NA	4q13.3		rs2367288-G	0.2896	8E-92		0.410257	[0.37-0.45] unit increase	Illumina [7506463] (imputed)	N
1155	chr4	74714097	74714098	rs2367288	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein EIF4EBP2	5,337 Icelandic ancestry individuals	NA	4q13.3		rs2367288-G	0.2896	2E-131		0.444723	[0.41-0.48] unit increase	Illumina [7506463] (imputed)	N
1155	chr4	74714097	74714098	rs2367288	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CREBBP	5,344 Icelandic ancestry individuals	NA	4q13.3		rs2367288-G	0.2896	2E-63		0.306624	[0.27-0.34] unit increase	Illumina [7506463] (imputed)	N
1155	chr4	74715178	74715179	rs61360774	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SLC3A2	5,365 Icelandic ancestry individuals	NA	4q13.3		rs61360774-T	0.07161	2E-169		0.954543	[0.89-1.02] unit increase	Illumina [7506463] (imputed)	N
1155	chr4	74715178	74715179	rs61360774	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PF4V1	5,366 Icelandic ancestry individuals	NA	4q13.3		rs61360774-T	0.07161	2E-164		0.951979	[0.88-1.02] unit increase	Illumina [7506463] (imputed)	N
1155	chr4	74715280	74715281	rs2367289	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein WFDC13	5,331 Icelandic ancestry individuals	NA	4q13.3		rs2367289-A	0.2642	1E-37		0.236852	[0.2-0.27] unit increase	Illumina [7506463] (imputed)	N
1155	chr4	74715280	74715281	rs2367289	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TRDMT1	5,360 Icelandic ancestry individuals	NA	4q13.3		rs2367289-A	0.2642	4E-20		0.192253	[0.15-0.23] unit increase	Illumina [7506463] (imputed)	N
1155	chr4	74715280	74715281	rs2367289	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SCG2	5,354 Icelandic ancestry individuals	NA	4q13.3		rs2367289-A	0.2642	6E-60		0.334063	[0.29-0.37] unit increase	Illumina [7506463] (imputed)	N
1155	chr4	74715280	74715281	rs2367289	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RAP1GDS1	5,361 Icelandic ancestry individuals	NA	4q13.3		rs2367289-A	0.2642	3E-30		0.239931	[0.2-0.28] unit increase	Illumina [7506463] (imputed)	N
1155	chr4	74715280	74715281	rs2367289	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NPPA	5,341 Icelandic ancestry individuals	NA	4q13.3		rs2367289-A	0.2642	3E-15		0.156917	[0.12-0.2] unit increase	Illumina [7506463] (imputed)	N
1155	chr4	74715280	74715281	rs2367289	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IGSF9B	5,346 Icelandic ancestry individuals	NA	4q13.3		rs2367289-A	0.2642	2E-13		0.148683	[0.11-0.19] unit increase	Illumina [7506463] (imputed)	N
1155	chr4	74715280	74715281	rs2367289	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HERC1	5,352 Icelandic ancestry individuals	NA	4q13.3		rs2367289-A	0.2642	1E-20		0.192173	[0.15-0.23] unit increase	Illumina [7506463] (imputed)	N
1155	chr4	74715280	74715281	rs2367289	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FAM209B	5,348 Icelandic ancestry individuals	NA	4q13.3		rs2367289-A	0.2642	3E-17		0.169741	[0.13-0.21] unit increase	Illumina [7506463] (imputed)	N
1155	chr4	74715280	74715281	rs2367289	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DNAJC11	5,359 Icelandic ancestry individuals	NA	4q13.3		rs2367289-A	0.2642	7E-21		0.199062	[0.16-0.24] unit increase	Illumina [7506463] (imputed)	N
1155	chr4	74715280	74715281	rs2367289	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DHFR	5,353 Icelandic ancestry individuals	NA	4q13.3		rs2367289-A	0.2642	6E-13		0.147791	[0.11-0.19] unit increase	Illumina [7506463] (imputed)	N
1155	chr4	74715280	74715281	rs2367289	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DDR1	5,340 Icelandic ancestry individuals	NA	4q13.3		rs2367289-A	0.2642	1E-16		0.16107	[0.12-0.2] unit increase	Illumina [7506463] (imputed)	N
1155	chr4	74718100	74718101	rs872914	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein AXIN2	5,352 Icelandic ancestry individuals	NA	4q13.3		rs872914-G	0.2899	2E-53		0.294706	[0.26-0.33] unit increase	Illumina [7506463] (imputed)	N
1155	chr4	74718100	74718101	rs872914	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q13.3	NR	rs872914-A	0.7109375	8E-52	(ETNK1, 8328_9_3)	0.3919511	[0.34-0.44] unit decrease	Illumina [> 1000000] (imputed)	N
1155	chr4	74718100	74718101	rs872914	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q13.3	NR	rs872914-A	0.7109375	8E-192	(EMC1, 11989_35_3)	0.7590213	[0.71-0.81] unit decrease	Illumina [> 1000000] (imputed)	N
1155	chr4	74718100	74718101	rs872914	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q13.3	NR	rs872914-A	0.7109375	8E-13	(DNAJC11, 9783_75_3)	0.19062407	[0.14-0.24] unit decrease	Illumina [> 1000000] (imputed)	N
1155	chr4	74718100	74718101	rs872914	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q13.3	NR	rs872914-A	0.7109375	7E-9	(TRIL, 14104_1_3)	0.15331115	[0.1-0.21] unit decrease	Illumina [> 1000000] (imputed)	N
1155	chr4	74718100	74718101	rs872914	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q13.3	NR	rs872914-A	0.7109375	6E-9	(ZPBP, 8635_283_3)	0.15519057	[0.1-0.21] unit decrease	Illumina [> 1000000] (imputed)	N
1155	chr4	74718100	74718101	rs872914	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q13.3	NR	rs872914-A	0.7109375	6E-22	(ARMC5, 8785_1_3)	0.254702	[0.2-0.31] unit decrease	Illumina [> 1000000] (imputed)	N
1155	chr4	74718100	74718101	rs872914	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q13.3	NR	rs872914-A	0.7109375	6E-17	(PGK1, 5020_50_1)	0.22160608	[0.17-0.27] unit decrease	Illumina [> 1000000] (imputed)	N
1155	chr4	74718100	74718101	rs872914	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q13.3	NR	rs872914-A	0.7109375	5E-18	(RIC3, 11228_37_3)	0.23623271	[0.18-0.29] unit decrease	Illumina [> 1000000] (imputed)	N
1155	chr4	74718100	74718101	rs872914	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q13.3	NR	rs872914-A	0.7109375	5E-15	(VPS29, 14318_1_3)	0.2093755	[0.16-0.26] unit decrease	Illumina [> 1000000] (imputed)	N
1155	chr4	74718100	74718101	rs872914	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q13.3	NR	rs872914-A	0.7109375	5E-14	(HERC1, 12705_9_3)	0.19959618	[0.15-0.25] unit decrease	Illumina [> 1000000] (imputed)	N
1155	chr4	74718100	74718101	rs872914	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q13.3	NR	rs872914-A	0.7109375	4E-9	(SULT1E1, 9878_3_3)	0.15784675	[0.11-0.21] unit decrease	Illumina [> 1000000] (imputed)	N
1155	chr4	74718100	74718101	rs872914	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q13.3	NR	rs872914-A	0.7109375	4E-9	(NPPA, 5443_62_2)	0.15800169	[0.11-0.21] unit decrease	Illumina [> 1000000] (imputed)	N
1155	chr4	74718100	74718101	rs872914	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q13.3	NR	rs872914-A	0.7109375	4E-16	(CXCL5, 2979_8_2)	0.21586576	[0.16-0.27] unit decrease	Illumina [> 1000000] (imputed)	N
1155	chr4	74718100	74718101	rs872914	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q13.3	NR	rs872914-A	0.7109375	4E-14	(RELB, 11464_9_3)	0.20350313	[0.15-0.26] unit decrease	Illumina [> 1000000] (imputed)	N
1155	chr4	74718100	74718101	rs872914	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q13.3	NR	rs872914-A	0.7109375	4E-14	(PSG5, 9314_9_3)	0.20410797	[0.15-0.26] unit decrease	Illumina [> 1000000] (imputed)	N
1155	chr4	74718100	74718101	rs872914	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q13.3	NR	rs872914-A	0.7109375	3E-73	(EIF4EBP2, 4184_43_3)	0.4689833	[0.42-0.52] unit decrease	Illumina [> 1000000] (imputed)	N
1155	chr4	74718100	74718101	rs872914	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q13.3	NR	rs872914-A	0.7109375	3E-34	(SCG2, 8377_87_4)	0.3182428	[0.27-0.37] unit decrease	Illumina [> 1000000] (imputed)	N
1155	chr4	74718100	74718101	rs872914	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q13.3	NR	rs872914-A	0.7109375	3E-31	(KPNA4, 12698_72_3)	0.30634916	[0.26-0.36] unit decrease	Illumina [> 1000000] (imputed)	N
1155	chr4	74718100	74718101	rs872914	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q13.3	NR	rs872914-A	0.7109375	3E-30	(AXIN2, 12925_105_3)	0.30909365	[0.26-0.36] unit decrease	Illumina [> 1000000] (imputed)	N
1155	chr4	74718100	74718101	rs872914	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q13.3	NR	rs872914-A	0.7109375	3E-23	(GSTT2B, 11273_176_3)	0.26593268	[0.21-0.32] unit decrease	Illumina [> 1000000] (imputed)	N
1155	chr4	74718100	74718101	rs872914	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q13.3	NR	rs872914-A	0.7109375	3E-160	(TNFAIP8, 12563_2_3)	0.68587893	[0.64-0.73] unit decrease	Illumina [> 1000000] (imputed)	N
1155	chr4	74718100	74718101	rs872914	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q13.3	NR	rs872914-A	0.7109375	3E-124	(ID2, 9426_73_3)	0.6087858	[0.56-0.66] unit decrease	Illumina [> 1000000] (imputed)	N
1155	chr4	74718100	74718101	rs872914	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q13.3	NR	rs872914-A	0.7109375	3E-11	(IFNLR1, 7192_37_3)	0.17979708	[0.13-0.23] unit decrease	Illumina [> 1000000] (imputed)	N
1155	chr4	74718100	74718101	rs872914	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q13.3	NR	rs872914-A	0.7109375	3E-10	(TMCC3, 8922_4_3)	0.16724817	[0.12-0.22] unit decrease	Illumina [> 1000000] (imputed)	N
1155	chr4	74718100	74718101	rs872914	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q13.3	NR	rs872914-A	0.7109375	2E-57	(EVA1B, 8062_15_3)	0.41938406	[0.37-0.47] unit decrease	Illumina [> 1000000] (imputed)	N
1155	chr4	74718100	74718101	rs872914	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q13.3	NR	rs872914-A	0.7109375	2E-49	(KITLG, 9377_25_3)	0.3877856	[0.34-0.44] unit decrease	Illumina [> 1000000] (imputed)	N
1155	chr4	74718100	74718101	rs872914	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q13.3	NR	rs872914-A	0.7109375	2E-29	(NLGN4X, 5357_60_3)	0.29868653	[0.25-0.35] unit decrease	Illumina [> 1000000] (imputed)	N
1155	chr4	74718100	74718101	rs872914	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q13.3	NR	rs872914-A	0.7109375	2E-250	(SLC3A2, 7056_16_3)	0.8317161	[0.79-0.88] unit decrease	Illumina [> 1000000] (imputed)	N
1155	chr4	74718100	74718101	rs872914	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q13.3	NR	rs872914-A	0.7109375	2E-22	(SCGB2A1, 5001_6_2)	0.25973347	[0.21-0.31] unit decrease	Illumina [> 1000000] (imputed)	N
1155	chr4	74718100	74718101	rs872914	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q13.3	NR	rs872914-A	0.7109375	2E-214	(PF4V1, 5663_18_3)	0.7836746	[0.74-0.83] unit decrease	Illumina [> 1000000] (imputed)	N
1155	chr4	74718100	74718101	rs872914	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q13.3	NR	rs872914-A	0.7109375	1E-9	(PSMD9, 13931_22_3)	0.16369611	[0.11-0.22] unit decrease	Illumina [> 1000000] (imputed)	N
1155	chr4	74718100	74718101	rs872914	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q13.3	NR	rs872914-A	0.7109375	1E-9	(PCDH15, 14228_1_3)	0.16695733	[0.11-0.22] unit decrease	Illumina [> 1000000] (imputed)	N
1155	chr4	74718100	74718101	rs872914	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q13.3	NR	rs872914-A	0.7109375	1E-9	(FGFR3, 3809_1_2)	0.15145065	[0.1-0.2] unit decrease	Illumina [> 1000000] (imputed)	N
1155	chr4	74718100	74718101	rs872914	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q13.3	NR	rs872914-A	0.7109375	1E-9	(DDR1, 14704_10_3)	0.1642649	[0.11-0.22] unit decrease	Illumina [> 1000000] (imputed)	N
1155	chr4	74718100	74718101	rs872914	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q13.3	NR	rs872914-A	0.7109375	1E-43	(CREBBP, 13614_6_3)	0.3660395	[0.32-0.42] unit decrease	Illumina [> 1000000] (imputed)	N
1155	chr4	74718100	74718101	rs872914	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q13.3	NR	rs872914-A	0.7109375	1E-31	(STX1B, 6966_144_3)	0.3203204	[0.27-0.37] unit decrease	Illumina [> 1000000] (imputed)	N
1155	chr4	74718100	74718101	rs872914	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q13.3	NR	rs872914-A	0.7109375	1E-27	(ARL1, 12392_30_3)	0.28575265	[0.23-0.34] unit decrease	Illumina [> 1000000] (imputed)	N
1155	chr4	74718100	74718101	rs872914	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q13.3	NR	rs872914-A	0.7109375	1E-21	(WFDC13, 9345_436_3)	0.25780606	[0.21-0.31] unit decrease	Illumina [> 1000000] (imputed)	N
1155	chr4	74718100	74718101	rs872914	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q13.3	NR	rs872914-A	0.7109375	1E-21	(CXCL6, 3495_15_2)	0.2573538	[0.21-0.31] unit decrease	Illumina [> 1000000] (imputed)	N
1155	chr4	74718100	74718101	rs872914	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q13.3	NR	rs872914-A	0.7109375	1E-17	(RAP1GDS1, 14106_46_3)	0.2284765	[0.18-0.28] unit decrease	Illumina [> 1000000] (imputed)	N
1155	chr4	74718100	74718101	rs872914	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q13.3	NR	rs872914-A	0.7109375	1E-12	(WISP3, 5927_4_3)	0.19122986	[0.14-0.24] unit decrease	Illumina [> 1000000] (imputed)	N
1155	chr4	74718100	74718101	rs872914	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q13.3	NR	rs872914-A	0.7109375	1E-112	(RAB39B, 12403_30_3)	0.5965522	[0.55-0.65] unit decrease	Illumina [> 1000000] (imputed)	N
1155	chr4	74718100	74718101	rs872914	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	4q13.3	PF4V1	rs872914-A	0.708	6E-12	(Phosphoglycerate kinase 1, PGK1.5020.50.1)	0.18	[0.12-0.24] unit decrease	Affymetrix [10572788] (imputed)	N
1155	chr4	74718844	74718845	rs941757	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein VPS29	5,334 Icelandic ancestry individuals	NA	4q13.3		rs941757-C	0.2898	5E-26		0.197063	[0.16-0.23] unit increase	Illumina [7506463] (imputed)	N
1155	chr4	74718844	74718845	rs941757	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TXNDC11	5,364 Icelandic ancestry individuals	NA	4q13.3		rs941757-C	0.2898	5E-14		0.151853	[0.11-0.19] unit increase	Illumina [7506463] (imputed)	N
1155	chr4	74718844	74718845	rs941757	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SULT1E1	5,350 Icelandic ancestry individuals	NA	4q13.3		rs941757-C	0.2898	1E-13		0.148323	[0.11-0.19] unit increase	Illumina [7506463] (imputed)	N
1155	chr4	74718844	74718845	rs941757	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein STX1B	5,363 Icelandic ancestry individuals	NA	4q13.3		rs941757-C	0.2898	2E-45		0.282664	[0.24-0.32] unit increase	Illumina [7506463] (imputed)	N
1155	chr4	74718844	74718845	rs941757	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PSMD9	5,326 Icelandic ancestry individuals	NA	4q13.3		rs941757-C	0.2898	1E-12		0.112533	[0.081-0.144] unit increase	Illumina [7506463] (imputed)	N
1155	chr4	74718844	74718845	rs941757	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NLGN4X	5,360 Icelandic ancestry individuals	NA	4q13.3		rs941757-C	0.2898	2E-42		0.270366	[0.23-0.31] unit increase	Illumina [7506463] (imputed)	N
1155	chr4	74718844	74718845	rs941757	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein KITLG	5,353 Icelandic ancestry individuals	NA	4q13.3		rs941757-C	0.2898	3E-82		0.374152	[0.34-0.41] unit increase	Illumina [7506463] (imputed)	N
1155	chr4	74718844	74718845	rs941757	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GSTT2	5,363 Icelandic ancestry individuals	NA	4q13.3		rs941757-C	0.2898	2E-41		0.27708	[0.24-0.32] unit increase	Illumina [7506463] (imputed)	N
1155	chr4	74718844	74718845	rs941757	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ETNK1	5,349 Icelandic ancestry individuals	NA	4q13.3		rs941757-C	0.2898	6E-86		0.379459	[0.34-0.42] unit increase	Illumina [7506463] (imputed)	N
1155	chr4	74718844	74718845	rs941757	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ARMC5	5,359 Icelandic ancestry individuals	NA	4q13.3		rs941757-C	0.2898	4E-29		0.224815	[0.19-0.26] unit increase	Illumina [7506463] (imputed)	N
1155	chr4	74718844	74718845	rs941757	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ARL1	5,351 Icelandic ancestry individuals	NA	4q13.3		rs941757-C	0.2898	2E-43		0.267003	[0.23-0.3] unit increase	Illumina [7506463] (imputed)	N
1155	chr4	74718940	74718941	rs941758	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	4q13.3	PF4V1	rs941758-A	0.708	9E-43	(ER membrane protein complex subunit 1, EMC1.11989.35.3)	0.36	[0.3-0.42] unit decrease	Affymetrix [10572788] (imputed)	N
1155	chr4	74718940	74718941	rs941758	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	4q13.3	PF4V1	rs941758-A	0.708	7E-85	(Platelet factor 4 variant, PF4V1.5663.18.3)	0.49	[0.43-0.55] unit decrease	Affymetrix [10572788] (imputed)	N
1155	chr4	74718940	74718941	rs941758	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	4q13.3	PF4V1	rs941758-A	0.708	5E-12	(Beta-soluble NSF attachment protein, NAPB.12655.30.3)	0.18	[0.12-0.24] unit decrease	Affymetrix [10572788] (imputed)	N
1155	chr4	74719728	74719729	rs2233654	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TNFAIP8	5,366 Icelandic ancestry individuals	NA	4q13.3		rs2233654-A	0.07709	5E-125		0.80707	[0.74-0.87] unit increase	Illumina [7506463] (imputed)	N
1155	chr4	74719728	74719729	rs2233654	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein KITLG	5,353 Icelandic ancestry individuals	NA	4q13.3		rs2233654-A	0.07709	9E-48		0.490548	[0.42-0.56] unit increase	Illumina [7506463] (imputed)	N
1155	chr4	74719728	74719729	rs2233654	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HIKESHI	5,331 Icelandic ancestry individuals	NA	4q13.3		rs2233654-A	0.07709	4E-13		0.233196	[0.17-0.3] unit increase	Illumina [7506463] (imputed)	N
1155	chr4	74719728	74719729	rs2233654	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein EMC1	5,364 Icelandic ancestry individuals	NA	4q13.3		rs2233654-A	0.07709	1E-125		0.801097	[0.74-0.87] unit increase	Illumina [7506463] (imputed)	N
1155	chr4	74719728	74719729	rs2233654	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein EIF4EBP2	5,337 Icelandic ancestry individuals	NA	4q13.3		rs2233654-A	0.07709	5E-64		0.5403	[0.48-0.6] unit increase	Illumina [7506463] (imputed)	N
1155	chr4	74724384	74724385	rs7695276	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	4q13.3		rs7695276-C	NR	3E-9		0.0162	[0.011-0.021] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
1155	chr4	74728507	74728508	rs2145614	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CXCL1	5,361 Icelandic ancestry individuals	NA	4q13.3		rs2145614-G	0.02528	7E-12		0.400871	[0.29-0.52] unit increase	Illumina [7506463] (imputed)	N
1155	chr4	74731811	74731812	rs3117600	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	4q13.3	CXCL1	rs3117600-G	0.2966867	3E-120	(Growth-regulated alpha protein)	1.013	[0.94-1.09] unit increase	Affymetrix [509946]	N
1155	chr4	74732885	74732886	rs3117602	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q13.3	NR	rs3117602-C	0.97234375	4E-22	(SLC3A2, 7056_16_3)	0.7220509	[0.58-0.87] unit decrease	Illumina [> 1000000] (imputed)	N
1155	chr4	74732885	74732886	rs3117602	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q13.3	NR	rs3117602-C	0.97234375	3E-20	(EMC1, 11989_35_3)	0.70300245	[0.55-0.85] unit decrease	Illumina [> 1000000] (imputed)	N
1155	chr4	74732885	74732886	rs3117602	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q13.3	NR	rs3117602-C	0.97234375	2E-9	(TNFAIP8, 12563_2_3)	0.45061457	[0.3-0.6] unit decrease	Illumina [> 1000000] (imputed)	N
1155	chr4	74732885	74732886	rs3117602	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q13.3	NR	rs3117602-C	0.97234375	2E-22	(PF4V1, 5663_18_3)	0.732837	[0.59-0.88] unit decrease	Illumina [> 1000000] (imputed)	N
1155	chr4	74732885	74732886	rs3117602	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q13.3	NR	rs3117602-C	0.97234375	2E-13	(RAB39B, 12403_30_3)	0.56447923	[0.41-0.71] unit decrease	Illumina [> 1000000] (imputed)	N
1155	chr4	74732885	74732886	rs3117602	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q13.3	NR	rs3117602-C	0.97234375	2E-11	(ID2, 9426_73_3)	0.5048253	[0.36-0.65] unit decrease	Illumina [> 1000000] (imputed)	N
1155	chr4	74732885	74732886	rs3117602	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q13.3	CXCL1	rs3117602-C	0.97234375	9E-8	(CXCL1, 2985_35_1)	0.39381686	[0.25-0.54] unit decrease	Illumina [> 1000000] (imputed)	N
1155	chr4	74732885	74732886	rs3117602	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	4q13.3	NR	rs3117602-A	0.048	2E-101	(Growth-regulated alpha protein, CXCL1.2985.35.1)	1.16	[1.06-1.26] unit increase	Affymetrix [10572788] (imputed)	N
1155	chr4	74733557	74733558	rs3117603	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	4q13.3	NR	rs3117603-T	0.129	1E-62	(Growth-regulated alpha protein, CXCL1.2985.35.1)	0.7	[0.62-0.78] unit increase	Affymetrix [10572788] (imputed)	N
1155	chr4	74734667	74734668	rs3117604	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	C-X-C motif chemokine 1 levels	21,758 European ancestry individuals	9,173 individuals	4q13.3		rs3117604-T	0.69	9E-212		0.2981	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1155	chr4	74734680	74734681	rs74544699	28369058	Folkersen L	2017-04-03	PLoS Genet	Mapping of 79 loci for 83 plasma protein biomarkers in cardiovascular disease.	Blood protein levels in cardiovascular risk	3,394 European ancestry individuals	2,639 individuals	4q13.3	CXCL1	rs74544699-A	0.95	1E-30		0.45	unit decrease	Illumina [5270624] (imputed)	N
1155	chr4	74734680	74734681	rs74544699	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Growth-regulated protein alpha levels	3,505 Finnish ancestry individuals	NA	4q13.3	NR	rs74544699-G		4E-11	(Conditioned on rs508977)	0.563	SD units increase	NR [10700000] (imputed)	N
1155	chr4	74743690	74743691	rs2115691	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	4q13.3	CXCL1	rs2115691-G	0.24	2E-178	(Growth-regulated alpha protein, CXCL1.2985.35.1)	0.75	[0.69-0.81] unit increase	Affymetrix [10572788] (imputed)	N
1155	chr4	74743690	74743691	rs2115691	25390645	Otowa T	2014-11-12	PLoS One	Genome-wide and gene-based association studies of anxiety disorders in European and African American samples.	Anxiety disorder	324 African American cases, 273 African American controls, 757 European ancestry cases, 940 European ancestry controls	NA	4q13.3	CXCL1	rs2115691-?		4E-6	(EA, case-control analysis)	1.49	[NR]	Affymetrix [up to 730090]	N
1155	chr4	74757235	74757236	rs1398015	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HMP19	5,353 Icelandic ancestry individuals	NA	4q13.3		rs1398015-T	0.04924	8E-12		0.281147	[0.2-0.36] unit decrease	Illumina [7506463] (imputed)	N
1155	chr4	74757235	74757236	rs1398015	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FAM210A	5,368 Icelandic ancestry individuals	NA	4q13.3		rs1398015-T	0.04924	3E-12		0.30611	[0.22-0.39] unit decrease	Illumina [7506463] (imputed)	N
1155	chr4	74758371	74758372	rs519565	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	4q13.3		rs519565-A	0.257839	2E-14		0.019957604	[0.015-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1155	chr4	74758800	74758801	rs16845091	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	4q13.3	CXCL1, HNRNPA1P55, CXCL1P	rs16845091-T	0.05466399	2E-39	(Growth-regulated alpha protein)	1.237	[1.06-1.41] unit increase	Affymetrix [509946]	N
1155	chr4	74762382	74762383	rs508977	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Growth-regulated protein alpha levels	3,505 Finnish ancestry individuals	NA	4q13.3	CXCL1	rs508977-G		8E-42		0.3802	[0.33-0.44] SD units increase	NR [10700000] (imputed)	N
1155	chr4	74766692	74766693	rs562213	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	4q13.3		rs562213-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1155	chr4	74777222	74777223	rs353028	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C6orf25	5,354 Icelandic ancestry individuals	NA	4q13.3		rs353028-T	0.02944	6E-12		0.371512	[0.27-0.48] unit decrease	Illumina [7506463] (imputed)	N
1155	chr4	74805104	74805105	rs115183538	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	4q13.3	NR	rs115183538-?	NR	2E-10	(CXCL10)	1.32051	[0.91-1.73] unit increase	Illumina [11901634] (imputed)	N
1155	chr4	74806698	74806699	rs112150491	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Myringotomy	4,138 European ancestry cases, 85,089 European ancestry controls	NA	4q13.3	NR	rs112150491-?	NR	4E-6		1.6843	[1.07-2.3] unit increase	Illumina [at least 560000] (imputed)	N
1155	chr4	74841955	74841956	rs144308811	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	4q13.3		rs144308811-C	0.0199	7E-6		1.786		NR [11110260] (imputed)	N
1156	chr4	74845416	74845417	rs1435520	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NLGN3	5,365 Icelandic ancestry individuals	NA	4q13.3		rs1435520-C	0.02891	2E-12		0.400167	[0.29-0.51] unit decrease	Illumina [7506463] (imputed)	N
1156	chr4	74846660	74846661	rs11574452	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ZBTB33	5,362 Icelandic ancestry individuals	NA	4q13.3		rs11574452-A	0.02661	5E-12		0.403033	[0.29-0.52] unit decrease	Illumina [7506463] (imputed)	N
1156	chr4	74846660	74846661	rs11574452	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein VAPB	5,357 Icelandic ancestry individuals	NA	4q13.3		rs11574452-A	0.02661	3E-13		0.423298	[0.31-0.54] unit decrease	Illumina [7506463] (imputed)	N
1156	chr4	74846660	74846661	rs11574452	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SYT17	5,337 Icelandic ancestry individuals	NA	4q13.3		rs11574452-A	0.02661	7E-14		0.412211	[0.3-0.52] unit decrease	Illumina [7506463] (imputed)	N
1156	chr4	74846660	74846661	rs11574452	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein STAT3	5,357 Icelandic ancestry individuals	NA	4q13.3		rs11574452-A	0.02661	1E-15		0.459519	[0.35-0.57] unit decrease	Illumina [7506463] (imputed)	N
1156	chr4	74846660	74846661	rs11574452	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SERPINA1	5,349 Icelandic ancestry individuals	NA	4q13.3		rs11574452-A	0.02661	3E-12		0.390899	[0.28-0.5] unit decrease	Illumina [7506463] (imputed)	N
1156	chr4	74846660	74846661	rs11574452	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PSME3	5,356 Icelandic ancestry individuals	NA	4q13.3		rs11574452-A	0.02661	5E-19		0.514847	[0.4-0.63] unit decrease	Illumina [7506463] (imputed)	N
1156	chr4	74846660	74846661	rs11574452	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NAB2	5,347 Icelandic ancestry individuals	NA	4q13.3		rs11574452-A	0.02661	1E-22		0.541269	[0.43-0.65] unit decrease	Illumina [7506463] (imputed)	N
1156	chr4	74846660	74846661	rs11574452	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MBD4	5,353 Icelandic ancestry individuals	NA	4q13.3		rs11574452-A	0.02661	3E-15		0.444062	[0.33-0.55] unit decrease	Illumina [7506463] (imputed)	N
1156	chr4	74846660	74846661	rs11574452	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LRRC4B	5,343 Icelandic ancestry individuals	NA	4q13.3		rs11574452-A	0.02661	7E-12		0.374055	[0.27-0.48] unit decrease	Illumina [7506463] (imputed)	N
1156	chr4	74846660	74846661	rs11574452	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein INPP5E	5,326 Icelandic ancestry individuals	NA	4q13.3		rs11574452-A	0.02661	2E-13		0.373738	[0.27-0.47] unit decrease	Illumina [7506463] (imputed)	N
1156	chr4	74846660	74846661	rs11574452	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HAT1	5,334 Icelandic ancestry individuals	NA	4q13.3		rs11574452-A	0.02661	4E-16		0.43553	[0.33-0.54] unit decrease	Illumina [7506463] (imputed)	N
1156	chr4	74846660	74846661	rs11574452	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GABBR1	5,358 Icelandic ancestry individuals	NA	4q13.3		rs11574452-A	0.02661	4E-13		0.42097	[0.31-0.53] unit decrease	Illumina [7506463] (imputed)	N
1156	chr4	74846660	74846661	rs11574452	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein EDDM3B	5,357 Icelandic ancestry individuals	NA	4q13.3		rs11574452-A	0.02661	7E-15		0.453881	[0.34-0.57] unit decrease	Illumina [7506463] (imputed)	N
1156	chr4	74846660	74846661	rs11574452	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DRAXIN	5,359 Icelandic ancestry individuals	NA	4q13.3		rs11574452-A	0.02661	2E-13		0.428681	[0.31-0.54] unit decrease	Illumina [7506463] (imputed)	N
1156	chr4	74846660	74846661	rs11574452	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DNAJC15	5,363 Icelandic ancestry individuals	NA	4q13.3		rs11574452-A	0.02661	1E-12		0.411292	[0.3-0.52] unit decrease	Illumina [7506463] (imputed)	N
1156	chr4	74846660	74846661	rs11574452	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CRIM1	5,336 Icelandic ancestry individuals	NA	4q13.3		rs11574452-A	0.02661	7E-13		0.387444	[0.28-0.49] unit decrease	Illumina [7506463] (imputed)	N
1156	chr4	74846660	74846661	rs11574452	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein COLQ	5,363 Icelandic ancestry individuals	NA	4q13.3		rs11574452-A	0.02661	7E-13		0.419188	[0.3-0.53] unit decrease	Illumina [7506463] (imputed)	N
1156	chr4	74846660	74846661	rs11574452	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein COLEC12	5,359 Icelandic ancestry individuals	NA	4q13.3		rs11574452-A	0.02661	1E-12		0.40997	[0.3-0.52] unit decrease	Illumina [7506463] (imputed)	N
1156	chr4	74846660	74846661	rs11574452	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CDK2AP1	5,357 Icelandic ancestry individuals	NA	4q13.3		rs11574452-A	0.02661	3E-13		0.423851	[0.31-0.54] unit decrease	Illumina [7506463] (imputed)	N
1156	chr4	74846660	74846661	rs11574452	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CD70	5,361 Icelandic ancestry individuals	NA	4q13.3		rs11574452-A	0.02661	7E-13		0.410643	[0.3-0.52] unit decrease	Illumina [7506463] (imputed)	N
1156	chr4	74846660	74846661	rs11574452	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CD5	5,358 Icelandic ancestry individuals	NA	4q13.3		rs11574452-A	0.02661	5E-13		0.419304	[0.31-0.53] unit decrease	Illumina [7506463] (imputed)	N
1156	chr4	74846660	74846661	rs11574452	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CD4	5,343 Icelandic ancestry individuals	NA	4q13.3		rs11574452-A	0.02661	4E-12		0.377736	[0.27-0.48] unit decrease	Illumina [7506463] (imputed)	N
1156	chr4	74846660	74846661	rs11574452	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CASP2	5,343 Icelandic ancestry individuals	NA	4q13.3		rs11574452-A	0.02661	2E-19		0.499828	[0.39-0.61] unit decrease	Illumina [7506463] (imputed)	N
1156	chr4	74846660	74846661	rs11574452	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CA2	5,360 Icelandic ancestry individuals	NA	4q13.3		rs11574452-A	0.02661	2E-14		0.440749	[0.33-0.55] unit decrease	Illumina [7506463] (imputed)	N
1156	chr4	74846660	74846661	rs11574452	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C19orf18	5,358 Icelandic ancestry individuals	NA	4q13.3		rs11574452-A	0.02661	5E-18		0.499449	[0.39-0.61] unit decrease	Illumina [7506463] (imputed)	N
1156	chr4	74846660	74846661	rs11574452	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein BMP10	5,364 Icelandic ancestry individuals	NA	4q13.3		rs11574452-A	0.02661	1E-13		0.436309	[0.32-0.55] unit decrease	Illumina [7506463] (imputed)	N
1156	chr4	74846660	74846661	rs11574452	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ADAMDEC1	5,332 Icelandic ancestry individuals	NA	4q13.3		rs11574452-A	0.02661	2E-13		0.389681	[0.29-0.49] unit decrease	Illumina [7506463] (imputed)	N
1156	chr4	74846660	74846661	rs11574452	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	4q13.3	PF4	rs11574452-?	NR	2E-14	(Alb)	0.08005035	NR unit decrease	Illumina [609262]	N
1156	chr4	74846660	74846661	rs11574452	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	4q13.3	PF4	rs11574452-?	NR	2E-10	(Alb)	0.080592215	NR unit decrease	Illumina [609262]	N
1156	chr4	74848064	74848065	rs3756074	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ZNRF4	5,347 Icelandic ancestry individuals	NA	4q13.3		rs3756074-C	0.02714	2E-14		0.425315	[0.32-0.53] unit decrease	Illumina [7506463] (imputed)	N
1156	chr4	74848064	74848065	rs3756074	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein WNT7A	5,360 Icelandic ancestry individuals	NA	4q13.3		rs3756074-C	0.02714	5E-13		0.409563	[0.3-0.52] unit decrease	Illumina [7506463] (imputed)	N
1156	chr4	74848064	74848065	rs3756074	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein VCAN	5,363 Icelandic ancestry individuals	NA	4q13.3		rs3756074-C	0.02714	3E-12		0.402653	[0.29-0.52] unit decrease	Illumina [7506463] (imputed)	N
1156	chr4	74848064	74848065	rs3756074	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TRAT1	5,337 Icelandic ancestry individuals	NA	4q13.3		rs3756074-C	0.02714	4E-18		0.455716	[0.35-0.56] unit decrease	Illumina [7506463] (imputed)	N
1156	chr4	74848064	74848065	rs3756074	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SETD2	5,351 Icelandic ancestry individuals	NA	4q13.3		rs3756074-C	0.02714	1E-21		0.533354	[0.42-0.64] unit decrease	Illumina [7506463] (imputed)	N
1156	chr4	74848064	74848065	rs3756074	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SCARF2	5,349 Icelandic ancestry individuals	NA	4q13.3		rs3756074-C	0.02714	6E-12		0.382933	[0.27-0.49] unit decrease	Illumina [7506463] (imputed)	N
1156	chr4	74848064	74848065	rs3756074	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RSRP1	5,347 Icelandic ancestry individuals	NA	4q13.3		rs3756074-C	0.02714	8E-14		0.419091	[0.31-0.53] unit decrease	Illumina [7506463] (imputed)	N
1156	chr4	74848064	74848065	rs3756074	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RRBP1	5,364 Icelandic ancestry individuals	NA	4q13.3		rs3756074-C	0.02714	2E-13		0.428384	[0.31-0.54] unit decrease	Illumina [7506463] (imputed)	N
1156	chr4	74848064	74848065	rs3756074	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PTK6	5,360 Icelandic ancestry individuals	NA	4q13.3		rs3756074-C	0.02714	4E-15		0.453584	[0.34-0.57] unit decrease	Illumina [7506463] (imputed)	N
1156	chr4	74848064	74848065	rs3756074	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PSMD7	5,342 Icelandic ancestry individuals	NA	4q13.3		rs3756074-C	0.02714	2E-15		0.42456	[0.32-0.53] unit decrease	Illumina [7506463] (imputed)	N
1156	chr4	74848064	74848065	rs3756074	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PROC	5,341 Icelandic ancestry individuals	NA	4q13.3		rs3756074-C	0.02714	1E-13		0.394873	[0.29-0.5] unit decrease	Illumina [7506463] (imputed)	N
1156	chr4	74848064	74848065	rs3756074	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PPARA	5,361 Icelandic ancestry individuals	NA	4q13.3		rs3756074-C	0.02714	3E-16		0.460684	[0.35-0.57] unit decrease	Illumina [7506463] (imputed)	N
1156	chr4	74848064	74848065	rs3756074	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein POMC	5,338 Icelandic ancestry individuals	NA	4q13.3		rs3756074-C	0.02714	6E-18		0.470456	[0.36-0.58] unit decrease	Illumina [7506463] (imputed)	N
1156	chr4	74848064	74848065	rs3756074	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NFU1	5,344 Icelandic ancestry individuals	NA	4q13.3		rs3756074-C	0.02714	5E-15		0.434032	[0.33-0.54] unit decrease	Illumina [7506463] (imputed)	N
1156	chr4	74848064	74848065	rs3756074	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NDUFAF8	5,355 Icelandic ancestry individuals	NA	4q13.3		rs3756074-C	0.02714	2E-12		0.400423	[0.29-0.51] unit decrease	Illumina [7506463] (imputed)	N
1156	chr4	74848064	74848065	rs3756074	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MYZAP	5,359 Icelandic ancestry individuals	NA	4q13.3		rs3756074-C	0.02714	2E-15		0.452847	[0.34-0.56] unit decrease	Illumina [7506463] (imputed)	N
1156	chr4	74848064	74848065	rs3756074	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MYC	5,351 Icelandic ancestry individuals	NA	4q13.3		rs3756074-C	0.02714	6E-12		0.386059	[0.28-0.5] unit decrease	Illumina [7506463] (imputed)	N
1156	chr4	74848064	74848065	rs3756074	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MAPKAPK5	5,349 Icelandic ancestry individuals	NA	4q13.3		rs3756074-C	0.02714	3E-12		0.390249	[0.28-0.5] unit decrease	Illumina [7506463] (imputed)	N
1156	chr4	74848064	74848065	rs3756074	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LAIR2	5,354 Icelandic ancestry individuals	NA	4q13.3		rs3756074-C	0.02714	2E-12		0.396306	[0.29-0.51] unit decrease	Illumina [7506463] (imputed)	N
1156	chr4	74848064	74848065	rs3756074	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein KLHL12	5,356 Icelandic ancestry individuals	NA	4q13.3		rs3756074-C	0.02714	2E-12		0.397608	[0.29-0.51] unit decrease	Illumina [7506463] (imputed)	N
1156	chr4	74848064	74848065	rs3756074	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL7	5,349 Icelandic ancestry individuals	NA	4q13.3		rs3756074-C	0.02714	4E-13		0.401438	[0.29-0.51] unit decrease	Illumina [7506463] (imputed)	N
1156	chr4	74848064	74848065	rs3756074	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HSP90AA1;HSP90AB1	5,337 Icelandic ancestry individuals	NA	4q13.3		rs3756074-C	0.02714	2E-13		0.390666	[0.29-0.49] unit decrease	Illumina [7506463] (imputed)	N
1156	chr4	74848064	74848065	rs3756074	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HNF1A	5,359 Icelandic ancestry individuals	NA	4q13.3		rs3756074-C	0.02714	1E-12		0.410804	[0.3-0.52] unit decrease	Illumina [7506463] (imputed)	N
1156	chr4	74848064	74848065	rs3756074	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HMP19	5,353 Icelandic ancestry individuals	NA	4q13.3		rs3756074-C	0.02714	8E-26		0.568723	[0.46-0.67] unit decrease	Illumina [7506463] (imputed)	N
1156	chr4	74848064	74848065	rs3756074	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HIF1A	5,348 Icelandic ancestry individuals	NA	4q13.3		rs3756074-C	0.02714	6E-13		0.396961	[0.29-0.5] unit decrease	Illumina [7506463] (imputed)	N
1156	chr4	74848064	74848065	rs3756074	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FAM174B	5,360 Icelandic ancestry individuals	NA	4q13.3		rs3756074-C	0.02714	1E-21		0.546481	[0.43-0.66] unit decrease	Illumina [7506463] (imputed)	N
1156	chr4	74848064	74848065	rs3756074	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DNAJB2	5,340 Icelandic ancestry individuals	NA	4q13.3		rs3756074-C	0.02714	3E-12		0.350321	[0.25-0.45] unit increase	Illumina [7506463] (imputed)	N
1156	chr4	74848064	74848065	rs3756074	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DEFB119	5,355 Icelandic ancestry individuals	NA	4q13.3		rs3756074-C	0.02714	7E-13		0.40596	[0.3-0.52] unit decrease	Illumina [7506463] (imputed)	N
1156	chr4	74848064	74848065	rs3756074	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CXADR	5,345 Icelandic ancestry individuals	NA	4q13.3		rs3756074-C	0.02714	4E-13		0.398536	[0.29-0.51] unit increase	Illumina [7506463] (imputed)	N
1156	chr4	74848064	74848065	rs3756074	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CRAT	5,359 Icelandic ancestry individuals	NA	4q13.3		rs3756074-C	0.02714	3E-12		0.40263	[0.29-0.52] unit decrease	Illumina [7506463] (imputed)	N
1156	chr4	74848064	74848065	rs3756074	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CPQ	5,362 Icelandic ancestry individuals	NA	4q13.3		rs3756074-C	0.02714	5E-15		0.451402	[0.34-0.56] unit decrease	Illumina [7506463] (imputed)	N
1156	chr4	74848064	74848065	rs3756074	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein COL26A1	5,359 Icelandic ancestry individuals	NA	4q13.3		rs3756074-C	0.02714	2E-15		0.456727	[0.34-0.57] unit decrease	Illumina [7506463] (imputed)	N
1156	chr4	74848064	74848065	rs3756074	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein COL20A1	5,362 Icelandic ancestry individuals	NA	4q13.3		rs3756074-C	0.02714	2E-12		0.404207	[0.29-0.52] unit decrease	Illumina [7506463] (imputed)	N
1156	chr4	74848064	74848065	rs3756074	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CLEC2L	5,363 Icelandic ancestry individuals	NA	4q13.3		rs3756074-C	0.02714	2E-15		0.456333	[0.34-0.57] unit decrease	Illumina [7506463] (imputed)	N
1156	chr4	74848064	74848065	rs3756074	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CETN2	5,358 Icelandic ancestry individuals	NA	4q13.3		rs3756074-C	0.02714	3E-12		0.398652	[0.29-0.51] unit decrease	Illumina [7506463] (imputed)	N
1156	chr4	74848064	74848065	rs3756074	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CEP57	5,359 Icelandic ancestry individuals	NA	4q13.3		rs3756074-C	0.02714	9E-15		0.444728	[0.33-0.56] unit decrease	Illumina [7506463] (imputed)	N
1156	chr4	74848064	74848065	rs3756074	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein BMP4	5,328 Icelandic ancestry individuals	NA	4q13.3		rs3756074-C	0.02714	9E-23		0.490559	[0.39-0.59] unit decrease	Illumina [7506463] (imputed)	N
1156	chr4	74848064	74848065	rs3756074	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ARSA	5,357 Icelandic ancestry individuals	NA	4q13.3		rs3756074-C	0.02714	4E-13		0.406115	[0.3-0.52] unit decrease	Illumina [7506463] (imputed)	N
1156	chr4	74848200	74848201	rs73824586	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,931 Sub-Saharan African ancestry males	NA	4q13.3		rs73824586-T	0.977518	5E-6		0.0437757	[0.025-0.062] unit decrease	Illumina [13900000] (imputed)	N
1156	chr4	74850648	74850649	rs184650103	27005778	Kettunen J	2016-03-23	Nat Commun	Genome-wide study for circulating metabolites identifies 62 loci and reveals novel systemic effects of LPA.	Metabolite levels (small molecules and protein measures)	2,118 Erasmus Rucphen (founder/genetic isolate), 22,807 European ancestry individuals	NA	4q13.3	ALB	rs184650103-T	0.01	1E-36	(Albumin)	0.6	[0.5-0.7] unit decrease	Affymetrix, Illumina, Perlegen [12133295] (imputed)	N
1156	chr4	74856534	74856535	rs2457996	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	4q13.3	NR	rs2457996-A	0.89	4E-7	(EA)	1.1094414		Affymetrix, Illumina [~ 9000000] (imputed)	N
1156	chr4	74856662	74856663	rs187080	35264221	Caron B	2022-03-09	Genome Med	Integrative genetic and immune cell analysis of plasma proteins in healthy donors identifies novel associations involving primary immune deficiency genes.	ENA 78 plasma levels	400 French ancestry individuals	NA	4q13.3		rs187080-C	NR	4E-13		0.498	[0.36-0.63] ng/mL increase	Illumina [5201092] (imputed)	N
1156	chr4	74857707	74857708	rs2472649	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	4q13.3	NR	rs2472649-?	NR	2E-6	(EA, C-X-C motif chemokine 5)			Affymetrix [509946]	N
1156	chr4	74857707	74857708	rs2472649	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	4q13.3	CXCL3, IL8, CXCL6, PF4V1, CXCL5, PF4, CXCL2, CXCL1	rs2472649-G	0.824	3E-8		1.095	[1.046-1.146]	Affymetrix, Illumina [1230000] (imputed)	N
1156	chr4	74858050	74858051	rs450373	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q13.3	NR	rs450373-A	0.84953125	9E-23	(EMC1, 11989_35_3)	0.34236428	[0.27-0.41] unit decrease	Illumina [> 1000000] (imputed)	N
1156	chr4	74858050	74858051	rs450373	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q13.3	NR	rs450373-A	0.84953125	8E-11	(ETNK1, 8328_9_3)	0.21804118	[0.15-0.28] unit decrease	Illumina [> 1000000] (imputed)	N
1156	chr4	74858050	74858051	rs450373	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q13.3	NR	rs450373-A	0.84953125	7E-30	(TNFAIP8, 12563_2_3)	0.38618052	[0.32-0.45] unit decrease	Illumina [> 1000000] (imputed)	N
1156	chr4	74858050	74858051	rs450373	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q13.3	NR	rs450373-A	0.84953125	7E-10	(CREBBP, 13614_6_3)	0.21059182	[0.14-0.28] unit decrease	Illumina [> 1000000] (imputed)	N
1156	chr4	74858050	74858051	rs450373	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q13.3	NR	rs450373-A	0.84953125	6E-12	(RAB39B, 12403_30_3)	0.24074504	[0.17-0.31] unit decrease	Illumina [> 1000000] (imputed)	N
1156	chr4	74858050	74858051	rs450373	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q13.3	NR	rs450373-A	0.84953125	5E-119	(CXCL5, 2979_8_2)	0.7583055	[0.7-0.82] unit decrease	Illumina [> 1000000] (imputed)	N
1156	chr4	74858050	74858051	rs450373	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q13.3	NR	rs450373-A	0.84953125	4E-13	(EVA1B, 8062_15_3)	0.24771458	[0.18-0.31] unit decrease	Illumina [> 1000000] (imputed)	N
1156	chr4	74858050	74858051	rs450373	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q13.3	NR	rs450373-A	0.84953125	3E-17	(EIF4EBP2, 4184_43_3)	0.28490603	[0.22-0.35] unit decrease	Illumina [> 1000000] (imputed)	N
1156	chr4	74858050	74858051	rs450373	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q13.3	NR	rs450373-A	0.84953125	2E-26	(PF4V1, 5663_18_3)	0.36461416	[0.3-0.43] unit decrease	Illumina [> 1000000] (imputed)	N
1156	chr4	74858050	74858051	rs450373	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q13.3	NR	rs450373-A	0.84953125	2E-21	(ID2, 9426_73_3)	0.32441008	[0.26-0.39] unit decrease	Illumina [> 1000000] (imputed)	N
1156	chr4	74858050	74858051	rs450373	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q13.3	NR	rs450373-A	0.84953125	2E-14	(KITLG, 9377_25_3)	0.2606582	[0.19-0.33] unit decrease	Illumina [> 1000000] (imputed)	N
1156	chr4	74858050	74858051	rs450373	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q13.3	NR	rs450373-A	0.84953125	1E-33	(SLC3A2, 7056_16_3)	0.40953374	[0.34-0.48] unit decrease	Illumina [> 1000000] (imputed)	N
1156	chr4	74863996	74863997	rs425535	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CXCL5	5,366 Icelandic ancestry individuals	NA	4q13.3		rs425535-T	0.1531	6E-236		0.766546	[0.72-0.81] unit increase	Illumina [7506463] (imputed)	N
1156	chr4	74863996	74863997	rs425535	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	4q13.3	NR	rs425535-?	NR	1E-9	(EA, C-X-C motif chemokine 5)			Affymetrix [509946]	N
1156	chr4	74863996	74863997	rs425535	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	4q13.3	NR	rs425535-?		2E-32	(CXCL5)	0.8238	[NR] unit increase	Illumina [NR]	N
1156	chr4	74863996	74863997	rs425535	25147954	Enroth S	2014-08-22	Nat Commun	Strong effects of genetic and lifestyle factors on biomarker variation and use of personalized cutoffs.	CXCL5 levels	up to 653 individuals	up to 317 individuals	4q13.3	CXCL5	rs425535-T	0.10023	4E-26		0.86	[0.7-1.02] unit decrease	Illumina [4840842] (imputed)	N
1156	chr4	74868464	74868465	rs193055909	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Growth-regulated protein alpha levels	3,505 Finnish ancestry individuals	NA	4q13.3	NR	rs193055909-G		9E-6		0.2716	[0.15-0.39] SD units increase	NR [10700000] (imputed)	N
1156	chr4	74872444	74872445	rs16850360	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TMEM57	5,362 Icelandic ancestry individuals	NA	4q13.3		rs16850360-G	0.02555	8E-14		0.44336	[0.33-0.56] unit decrease	Illumina [7506463] (imputed)	N
1156	chr4	74872444	74872445	rs16850360	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SMDT1	5,360 Icelandic ancestry individuals	NA	4q13.3		rs16850360-G	0.02555	2E-12		0.404761	[0.29-0.52] unit decrease	Illumina [7506463] (imputed)	N
1156	chr4	74872444	74872445	rs16850360	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SGK3	5,359 Icelandic ancestry individuals	NA	4q13.3		rs16850360-G	0.02555	2E-12		0.417626	[0.3-0.53] unit decrease	Illumina [7506463] (imputed)	N
1156	chr4	74872444	74872445	rs16850360	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RMDN3	5,343 Icelandic ancestry individuals	NA	4q13.3		rs16850360-G	0.02555	3E-13		0.404336	[0.3-0.51] unit decrease	Illumina [7506463] (imputed)	N
1156	chr4	74872444	74872445	rs16850360	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NCR2	5,333 Icelandic ancestry individuals	NA	4q13.3		rs16850360-G	0.02555	2E-12		0.366109	[0.26-0.47] unit decrease	Illumina [7506463] (imputed)	N
1156	chr4	74872444	74872445	rs16850360	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GRP	5,355 Icelandic ancestry individuals	NA	4q13.3		rs16850360-G	0.02555	4E-14		0.438687	[0.33-0.55] unit decrease	Illumina [7506463] (imputed)	N
1156	chr4	74872444	74872445	rs16850360	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GCNT2	5,350 Icelandic ancestry individuals	NA	4q13.3		rs16850360-G	0.02555	2E-16		0.474659	[0.36-0.59] unit decrease	Illumina [7506463] (imputed)	N
1156	chr4	74872444	74872445	rs16850360	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GALNT3	5,344 Icelandic ancestry individuals	NA	4q13.3		rs16850360-G	0.02555	2E-14		0.434356	[0.32-0.55] unit decrease	Illumina [7506463] (imputed)	N
1156	chr4	74872444	74872445	rs16850360	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FMR1	5,356 Icelandic ancestry individuals	NA	4q13.3		rs16850360-G	0.02555	7E-15		0.455731	[0.34-0.57] unit decrease	Illumina [7506463] (imputed)	N
1156	chr4	74872444	74872445	rs16850360	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ELF5	5,359 Icelandic ancestry individuals	NA	4q13.3		rs16850360-G	0.02555	5E-15		0.458627	[0.34-0.57] unit decrease	Illumina [7506463] (imputed)	N
1156	chr4	74872444	74872445	rs16850360	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein EFNB2	5,359 Icelandic ancestry individuals	NA	4q13.3		rs16850360-G	0.02555	2E-13		0.425067	[0.31-0.54] unit decrease	Illumina [7506463] (imputed)	N
1156	chr4	74872444	74872445	rs16850360	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DEFB129	5,362 Icelandic ancestry individuals	NA	4q13.3		rs16850360-G	0.02555	1E-13		0.438911	[0.32-0.55] unit decrease	Illumina [7506463] (imputed)	N
1156	chr4	74872444	74872445	rs16850360	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DEFB118	5,353 Icelandic ancestry individuals	NA	4q13.3		rs16850360-G	0.02555	5E-12		0.390325	[0.28-0.5] unit decrease	Illumina [7506463] (imputed)	N
1156	chr4	74872444	74872445	rs16850360	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CSF2RB	5,362 Icelandic ancestry individuals	NA	4q13.3		rs16850360-G	0.02555	3E-16		0.482012	[0.37-0.6] unit increase	Illumina [7506463] (imputed)	N
1156	chr4	74872444	74872445	rs16850360	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CLEC7A	5,365 Icelandic ancestry individuals	NA	4q13.3		rs16850360-G	0.02555	8E-14		0.450145	[0.33-0.57] unit decrease	Illumina [7506463] (imputed)	N
1156	chr4	74872444	74872445	rs16850360	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ANXA6	5,362 Icelandic ancestry individuals	NA	4q13.3		rs16850360-G	0.02555	4E-23		0.586768	[0.47-0.7] unit decrease	Illumina [7506463] (imputed)	N
1156	chr4	74872444	74872445	rs16850360	22916037	Inouye M	2012-08-16	PLoS Genet	Novel Loci for metabolic networks and multi-tissue expression studies reveal genes for atherosclerosis.	Metabolite levels	6,608 European ancestry individuals	NA	4q13.3	CXCL5, PF4, PPBP	rs16850360-?	0.03	3E-10				Illumina [~ 2000000] (imputed)	N
1156	chr4	74873634	74873635	rs11729931	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels (BMI interaction)	up to 15,007 European ancestry male individuals, up to 16,943 European ancestry female individuals	NA	4q13.3	CXCL5, CXCL3	rs11729931-C	0.85	3E-6	(Women)	0.014849857	[0.0086-0.0211] unit decrease	Affymetrix, Illumina [at least 188473] (imputed)	N
1156	chr4	74932806	74932807	rs16850408	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	4q13.3	NR	rs16850408-A	0.368939	7E-14		0.014678	[0.011-0.019] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
1156	chr4	74937100	74937101	rs61688633	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	4q13.3		rs61688633-G	0.369223	4E-10		0.014412503	[0.0099-0.0189] unit increase	Affymetrix [93095623] (imputed)	N
1156	chr4	74944833	74944834	rs13128896	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q13.3	NR	rs13128896-T	0.5666	5E-14				Affymetrix, Illumina [23467995] (imputed)	N
1156	chr4	74946993	74946994	rs11733208	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	4q13.3		rs11733208-C	NR	2E-145		0.0514	[0.047-0.055] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
1156	chr4	74946993	74946994	rs11733208	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	4q13.3		rs11733208-C	NR	5E-200		0.0656	[0.061-0.07] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
1156	chr4	74948053	74948054	rs1371794	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	4q13.3		rs1371794-A	0.376	1E-91				Affymetrix [10369434] (imputed)	N
1156	chr4	74948053	74948054	rs1371794	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	4q13.3	NR	rs1371794-C	0.622486	4E-243		0.063244	[0.06-0.067] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1156	chr4	74948053	74948054	rs1371794	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	4q13.3	NR	rs1371794-C	0.622286	8E-294		0.07253	[0.069-0.076] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
1156	chr4	74955049	74955050	rs518867	33385171	Hagg S	2020-12-31	Hum Genet	Deciphering the genetic and epidemiological landscape of mitochondrial DNA abundance.	Mitochondrial DNA levels	295,150 European ancestry individuals	NA	4q13.3	NR	rs518867-T	0.3598	2E-20		0.0245654	[0.019-0.03] unit decrease	Affymetrix [3505788] (imputed)	N
1156	chr4	74955049	74955050	rs518867	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	4q13.3	RP11-629B11.4	rs518867-C	0.623006	2E-15		0.018083997	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1156	chr4	74956371	74956372	rs546829	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	4q13.3	RP11-629B11.4	rs546829-T	0.626466	4E-55		0.03568592	[0.031-0.04] unit increase	Affymetrix [93095623] (imputed)	N
1156	chr4	74956371	74956372	rs546829	21738478	Okada Y	2011-06-30	PLoS Genet	Identification of nine novel loci associated with white blood cell subtypes in a Japanese population.	White blood cell types	8,794 Japanese ancestry individuals	5,998 Japanese ancestry individuals	4q13.3	CXCL2	rs546829-A	0.43	3E-7	(neutrophil count)	0.06	[0.04-0.08] unit increase	Illumina [2178645] (imputed)	N
1156	chr4	74956537	74956538	rs882638	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of granulocytes	170,223 European ancestry individuals	NA	4q13.3	RP11-629B11.4	rs882638-A	0.6039	2E-17		0.03042907	[0.023-0.037] unit increase	Affymetrix [~ 2500000] (imputed)	N
1156	chr4	74959092	74959093	rs1837559	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	4q13.3		rs1837559-A	0.624	4E-15				Affymetrix [10369434] (imputed)	N
1156	chr4	74959995	74959996	rs11725704	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	4q13.3	CXCL2	rs11725704-G	0.376205	3E-175		0.064285755	[0.06-0.069] unit increase	Affymetrix [93095623] (imputed)	N
1156	chr4	74959995	74959996	rs11725704	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	4q13.3	CXCL2	rs11725704-G	0.376223	5E-225		0.07317777	[0.069-0.078] unit increase	Affymetrix [93095623] (imputed)	N
1156	chr4	74959995	74959996	rs11725704	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q13.3	NR	rs11725704-G	0.379726	6E-270				Affymetrix, Illumina [24649327] (imputed)	N
1156	chr4	74959995	74959996	rs11725704	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	4q13.3		rs11725704-?	NR	1E-165				NR [~ 8900000] (imputed)	N
1156	chr4	74959995	74959996	rs11725704	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	4q13.3	CXCL2	rs11725704-G	0.3765	2E-71		0.06609053	[0.059-0.073] unit increase	Affymetrix [~ 2500000] (imputed)	N
1156	chr4	74959995	74959996	rs11725704	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	4q13.3	CXCL2	rs11725704-G	0.3762	3E-85		0.07240236	[0.065-0.08] unit increase	Affymetrix [~ 2500000] (imputed)	N
1156	chr4	74959995	74959996	rs11725704	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	4q13.3	CXCL2	rs11725704-G	0.3762	2E-86		0.07296875	[0.066-0.08] unit increase	Affymetrix [~ 2500000] (imputed)	N
1156	chr4	74959995	74959996	rs11725704	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	4q13.3	CXCL2	rs11725704-G	0.3762	3E-48		0.05377511	[0.047-0.061] unit increase	Affymetrix [~ 2500000] (imputed)	N
1156	chr4	74959995	74959996	rs11725704	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	4q13.3	CXCL2	rs11725704-G	0.3763	2E-86		0.07278629	[0.066-0.08] unit increase	Affymetrix [~ 2500000] (imputed)	N
1156	chr4	74959995	74959996	rs11725704	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	4q13.3	CXCL2	rs11725704-G	0.3763	8E-81		0.07073737	[0.063-0.078] unit increase	Affymetrix [~ 2500000] (imputed)	N
1156	chr4	74959995	74959996	rs11725704	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	4q13.3	CXCL2	rs11725704-G	0.3763	1E-24		0.03774749	[0.031-0.045] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1156	chr4	74959995	74959996	rs11725704	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	4q13.3	CXCL2	rs11725704-G	0.3762	4E-36		0.04616097	[0.039-0.053] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1156	chr4	74959995	74959996	rs11725704	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	4q13.3	CXCL2	rs11725704-G	0.3762	2E-39		0.04842788	[0.041-0.056] unit increase	Affymetrix [~ 2500000] (imputed)	N
1156	chr4	74959995	74959996	rs11725704	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	4q13.3	CXCL2	rs11725704-G	0.3762	1E-84		0.07228309	[0.065-0.08] unit increase	Affymetrix [~ 2500000] (imputed)	N
1156	chr4	74963048	74963049	rs9131	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	4q13.3		rs9131-C	0.398	4E-36				Affymetrix [10369434] (imputed)	N
1156	chr4	74963048	74963049	rs9131	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	4q13.3		rs9131-C	0.398	1E-21				Affymetrix [10369434] (imputed)	N
1156	chr4	74963048	74963049	rs9131	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	4q13.3	CXCL2	rs9131-T	0.600963	4E-126		0.053979196	[0.05-0.058] unit decrease	Affymetrix [93095623] (imputed)	N
1156	chr4	74963048	74963049	rs9131	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	4q13.3	CXCL2	rs9131-T	0.60098	6E-92		0.04590991	[0.041-0.05] unit increase	Affymetrix [93095623] (imputed)	N
1156	chr4	74963048	74963049	rs9131	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	4q13.3	CXCL2	rs9131-T	0.600913	3E-19		0.020332322	[0.016-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1156	chr4	74963048	74963049	rs9131	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q13.3	NR	rs9131-T	0.572933	9E-325				Affymetrix, Illumina [23114412] (imputed)	N
1156	chr4	74963048	74963049	rs9131	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	4q13.3	CXCL2	rs9131-T	0.6014	8E-17		0.03042804	[0.023-0.038] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1156	chr4	74963048	74963049	rs9131	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	4q13.3	CXCL2	rs9131-T	0.6014	4E-12		0.02531813	[0.018-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
1156	chr4	74969413	74969414	rs72652934	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation-estimated granulocyte proportions	34,470 European ancestry individuals	NA	4q13.3	NR	rs72652934-A	0.3672	5E-9		0.0041	[0.0027-0.0055] unit increase	Affymetrix, Illumina [7568298] (imputed)	N
1156	chr4	74971195	74971196	rs549280	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	154,355 East Asian ancestry individuals	NA	4q13.3		rs549280-A	0.562926	2E-34		0.0418335	[0.035-0.049] unit decrease	Illumina [13479091] (imputed)	N
1156	chr4	74971195	74971196	rs549280	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	82,810 East Asian ancestry individuals	NA	4q13.3		rs549280-A	0.560008	7E-34		0.0566486	[0.048-0.066] unit decrease	Illumina [13467171] (imputed)	N
1156	chr4	74971195	74971196	rs549280	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	151,807 East Asian ancestry individuals	NA	4q13.3	NR	rs549280-G	0.442475	4E-37		0.046655	[0.039-0.054] SD units increase	Affymetrix, Illumina [16710636] (imputed)	N
1156	chr4	74971195	74971196	rs549280	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	White blood cell count	107,964 Japanese ancestry individuals	NA	4q13.3	CXCL2, MTHFD2L	rs549280-?	NR	9E-25		0.04374	[0.035-0.052] unit decrease novel	Illumina [6108953] (imputed)	N
1156	chr4	74971195	74971196	rs549280	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Neutrophil count	62,076 Japanese ancestry individuals	NA	4q13.3	CXCL2, MTHFD2L	rs549280-?	NR	2E-28		0.06311	[0.052-0.074] unit decrease novel	Illumina [6108953] (imputed)	N
1156	chr4	74971195	74971196	rs549280	25096241	Keller MF	2014-08-05	Hum Mol Genet	Trans-ethnic meta-analysis of white blood cell phenotypes.	White blood cell count	16,843 Japanese ancestry individuals, 19,509 European ancestry individuals, 16,388 African American individuals	NA	4q13.3	NR	rs549280-?	NR	4E-10		0.011	[0.0075-0.0145] unit decrease	Illumina [NR] (imputed)	N
1156	chr4	74971195	74971196	rs549280	25096241	Keller MF	2014-08-05	Hum Mol Genet	Trans-ethnic meta-analysis of white blood cell phenotypes.	Neutrophil count	9,802 Japanese ancestry individuals, 16,550 European ancestry individuals, 7,391 African American individuals	NA	4q13.3	NR	rs549280-?	NR	1E-6		0.0204	[0.012-0.029] unit decrease	Illumina [NR] (imputed)	N
1157	chr4	74977836	74977837	rs1371799	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	White blood cell count	8,825 African American individuals, 18,251 Hispanic/Latino individuals, 543 Asian ancestry individuals, 606 Native American ancestry individuals, 383 individuals	NA	4q13.3	NR	rs1371799-?	NR	2E-6		0.01270568	[0.0075-0.0179] unit decrease	Illumina [30613845] (imputed)	N
1157	chr4	74977836	74977837	rs1371799	21738479	Reiner AP	2011-06-30	PLoS Genet	Genome-wide association study of white blood cell count in 16,388 African Americans: the continental origins and genetic epidemiology network (COGENT).	White blood cell count	16,388 African American individuals	3,551 Hispanic individuals, 14,767 Japanese ancestry individuals, 19,509 European ancestry individuals	4q13.3	CXCL2	rs1371799-?	NR	2E-17				Affymetrix, Illumina [2489215] (imputed)	N
1157	chr4	74978339	74978340	rs1866755	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation-estimated granulocyte proportions	34,470 European ancestry individuals, 6,152 African American individuals	NA	4q13.3	NR	rs1866755-?	NR	6E-9				Affymetrix, Illumina [6210527] (imputed)	N
1157	chr4	74978339	74978340	rs1866755	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	78,744 East Asian ancestry individuals	NA	4q13.3	NR	rs1866755-C	0.541645	1E-32		0.06104	[0.051-0.071] SD units increase	Affymetrix, Illumina [16289093] (imputed)	N
1157	chr4	74991635	74991636	rs526993	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	4q13.3	CXCL2	rs526993-?	NR	6E-6	(LPC 20:5)	1.7184424	[0.98-2.46] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1157	chr4	74994330	74994331	rs78708399	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	4q13.3	NR	rs78708399-?	NR	3E-11	(CXCL10)	1.03022	[0.73-1.33] unit increase	Illumina [11901634] (imputed)	N
1157	chr4	75032949	75032950	rs75078633	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Growth-regulated protein alpha levels	3,505 Finnish ancestry individuals	NA	4q13.3	NR	rs75078633-C		7E-7		0.9114	[0.55-1.27] SD units decrease	NR [10700000] (imputed)	N
1157	chr4	75084731	75084732	rs182616603	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	LDL cholesterol	up 62,166 European ancestry individuals	NA	4q13.3	MTHFD2L	rs182616603-T	0.01	2E-12		0.314	[0.23-0.4] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
1157	chr4	75084731	75084732	rs182616603	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	Cholesterol, total	up to 62,166 European ancestry individuals	NA	4q13.3	MTHFD2L	rs182616603-T	0.01	2E-17		0.374	[0.29-0.46] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
1158	chr4	75127528	75127529	rs186192004	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	4q13.3		rs186192004-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1158	chr4	75136427	75136428	rs79383797	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	4q13.3		rs79383797-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1158	chr4	75138297	75138298	rs10019396	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	4q13.3	NR	rs10019396-A	0.217223	2E-15		0.0300377	[0.023-0.037] unit increase	NR [19129689] (imputed)	N
1158	chr4	75148953	75148954	rs75868097	34746714	Hahn T	2021-08-25	EClinicalMedicine	Novel genetic variants associated with mortality after unrelated donor allogeneic hematopoietic cell transplantation.	Transplant-related mortality after unrelated donor allogeneic hematopoietic cell transplantation (donor-recipient mismatch)	2,799 European ancestry donor-recipient pairs	NA	4q13.3		rs75868097-A	0.027	5E-9		2.6572719	[1.9162535427588256-3.684843296343789]	Illumina [8515276] (imputed)	N
1158	chr4	75160823	75160824	rs16850864	22610502	Kennedy RB	2012-05-19	Hum Genet	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IL-1beta)	Up to 512 European ancestry individuals, up to 199 African American individuals	NA	4q13.3	MTHFD2L	rs16850864-A		7E-9	(EA)			Illumina [NR]	N
1158	chr4	75170139	75170140	rs16850885	22610502	Kennedy RB	2012-05-19	Hum Genet	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IL-1beta)	Up to 512 European ancestry individuals, up to 199 African American individuals	NA	4q13.3	EPGN, MTHFD2L	rs16850885-A		7E-9	(EA)			Illumina [NR]	N
1158	chr4	75197035	75197036	rs28423375	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Lateral ventricle temporal horn volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	4q13.3	NR	rs28423375-?		8E-6				Illumina [4322238] (imputed)	N
1158	chr4	75204938	75204939	rs116808538	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	4q13.3	NR	rs116808538-?	NR	2E-17	(CXCL10)	1.45945	[1.12-1.8] unit increase	Illumina [11901634] (imputed)	N
1158	chr4	75223710	75223711	rs2168889	22916037	Inouye M	2012-08-16	PLoS Genet	Novel Loci for metabolic networks and multi-tissue expression studies reveal genes for atherosclerosis.	Metabolite levels	6,608 European ancestry individuals	NA	4q13.3	EREG	rs2168889-?	0.05	6E-14				Illumina [~ 2000000] (imputed)	N
1158	chr4	75224589	75224590	rs1350666	18821565	Lasky-Su J	2008-12-05	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association scan of quantitative traits for attention deficit hyperactivity disorder identifies novel associations and confirms candidate gene associations.	Attention deficit hyperactivity disorder	930 European ancestry trios	NA	4q13.3	EREG	rs1350666-?	NR	8E-6	(binary)			Perlegen [429981]	N
1159	chr4	75255734	75255735	rs112444088	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Alcohol consumption x experiences in childhood (felt loved by family member) interaction	41,648 European ancestry individuals	NA	4q13.3		rs112444088-?	NR	1E-8		1.646	[1.08-2.21] unit decrease	Affymetrix [NR] (imputed)	N
1159	chr4	75272517	75272518	rs140966705	33841421	Li J	2021-03-25	Front Immunol	Variants at the MHC Region Associate With Susceptibility to <i>Clostridioides difficile</i> Infection: A Genome-Wide Association Study Using Comprehensive Electronic Health Records.	Clostridioides difficle infection in antibiotics-users	587 European ancestry cases, 3,166 European ancestry controls	NA	4q13.3	NR	rs140966705-C	0.041	2E-6		1.85	[1.47-2.28]	Illumina [64973696] (imputed)	N
1159	chr4	75328478	75328479	rs1874202	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	4q13.3		rs1874202-?	NR	4E-35				NR [~ 8900000] (imputed)	N
1159	chr4	75328478	75328479	rs1874202	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	4q13.3	AREG	rs1874202-?	NR	1E-22		1.0803803	NR	Affymetrix [9154080] (imputed)	N
1159	chr4	75334863	75334864	rs12511037	27020472	Fan Q	2016-03-29	Nat Commun	Meta-analysis of gene-environment-wide association scans accounting for education level identifies additional loci for refractive error.	Spherical equivalent (joint analysis main effects and education interaction)	2,604 Erasmus Rucphen population isolate individuals, 456 Sardinian population isolate individuals, 36,976 European ancestry individuals, 5,971 East Asian ancestry individuals, 2,256 Malay ancestry individuals, 2,088 Indian ancestry individuals	NA	4q13.3	AREG	rs12511037-C	0.91	6E-10	(Asian ancestry)			Affymetrix, Illumina [up to 7331415] (imputed)	N
1159	chr4	75341884	75341885	rs6819541	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	4q13.3	NR	rs6819541-G	0.416046	2E-16		0.0263706	[0.02-0.033] unit increase	NR [19129689] (imputed)	N
1160	chr4	75419786	75419787	rs10034692	25342443	Lindstrom S	2014-10-24	Nat Commun	Genome-wide association study identifies multiple loci associated with both mammographic density and breast cancer risk.	Mammographic density (dense area)	7,600 European ancestry individuals	343 European ancestry individuals, 1,472 Old Order Amish individuals, 8,564 individuals	4q13.3	AREG	rs10034692-A	0.74	2E-10		0.16	[0.1-0.22] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1161	chr4	75497995	75497996	rs62314943	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	4q13.3	NR	rs62314943-?	NR	2E-6		0.0476	[0.028-0.067] unit increase	Illumina [at least 560000] (imputed)	N
1161	chr4	75502486	75502487	rs62314947	22747683	Eriksson N	2012-06-30	BMC Med Genet	Genetic variants associated with breast size also influence breast cancer risk.	Breast size	16,175 European ancestry female individuals	NA	4q13.3	EREG, AREGB, EPGN, AREG	rs62314947-T	0.281	5E-8		0.101	[0.064-0.138] cup size decrease	Illumina [7422970] (imputed)	N
1161	chr4	75514770	75514770	rs57561198	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	4q13.3	NR	rs57561198-?	NR	6E-10	(CXCL10)	1.95974	[1.34-2.58] unit increase	Illumina [11901634] (imputed)	N
1161	chr4	75543288	75543289	rs12642133	25342443	Lindstrom S	2014-10-24	Nat Commun	Genome-wide association study identifies multiple loci associated with both mammographic density and breast cancer risk.	Mammographic density (dense area)	7,600 European ancestry individuals	343 European ancestry individuals, 1,472 Old Order Amish individuals, 8,564 individuals	4q13.3	AREG	rs12642133-A	0.3	8E-10				Affymetrix, Illumina [~ 2500000] (imputed)	N
1161	chr4	75547012	75547013	rs7659874	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Breast size	33,790 European ancestry individuals	NA	4q13.3	AREG, BTC	rs7659874-?	NR	9E-13		0.105	[0.134-0.076] unit decrease	Illumina [12039487] (imputed)	N
1162	chr4	75652859	75652860	rs115560901	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	4q13.3	NR	rs115560901-?	NR	1E-15	(CXCL10)	2.04804	[1.55-2.55] unit increase	Illumina [11901634] (imputed)	N
1162	chr4	75656078	75656079	rs11942410	33888516	Zheng T	2021-04-22	Gut	Genome-wide analysis of 944 133 individuals provides insights into the etiology of haemorrhoidal disease.	Haemorrhoidal disease	218,920 European ancestry cases, 725,213 European ancestry controls	NA	4q13.3	BTC	rs11942410-?	0.2552	1E-8		0.97	[0.96-0.98]	Affymetrix, Illumina [8494288] (imputed)	N
1162	chr4	75673362	75673363	rs4585380	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	4q13.3	BTC	rs4585380-G	0.74	3E-9		1.07	[1.05-1.09]	Affymetrix, Illumina [6224355] (imputed)	N
1162	chr4	75675705	75675706	rs35926103	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	4q13.3	NR	rs35926103-G	0.26	6E-9		0.92	[0.9-0.95]	Affymetrix [9886854] (imputed)	N
1162	chr4	75675705	75675706	rs35926103	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	4q13.3	NR	rs35926103-G	0.26	3E-8			[NR]	Affymetrix [9886854] (imputed)	N
1162	chr4	75675705	75675706	rs35926103	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in non-current smokers	16,488 European ancestry cases, 169,688 European ancestry controls	NA	4q13.3	NR	rs35926103-G	0.26	6E-9		0.92	[0.9-0.95]	Affymetrix [9886854] (imputed)	N
1162	chr4	75675705	75675706	rs35926103	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	4q13.3	BTC	rs35926103-G	0.260733841975601	2E-6		0.0029097	[NR] unit increase	Affymetrix [> 30000000] (imputed)	N
1162	chr4	75675840	75675841	rs11938093	33909500	Moll M	2021-04-28	Am J Physiol Lung Cell Mol Physiol	A Systematic Analysis of Protein-altering Exonic Variants in Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease	up to 31,465 European ancestry cases, up to 203,688 European ancestry controls, up to 1,413 African ancestry cases, up to 6,080 African ancestry controls, up to 287 East Asian ancestry cases, up to 7,484 East Asian ancestry controls, up to 61 Hispanic cases, up to 613 Hispanic controls	NA	4q13.3	BTC	rs11938093-A	0.74	4E-9		1.07	[1.04 -1.09]	Illumina [at least 109036]	N
1162	chr4	75676255	75676256	rs11938276	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	4q13.3		rs11938276-?	NR	2E-28				NR [~ 8900000] (imputed)	N
1162	chr4	75676528	75676529	rs62316310	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	4q13.3	BTC	rs62316310-A	0.2603	2E-23		0.0272	[0.022-0.032] unit increase	Affymetrix [19819130] (imputed)	N
1162	chr4	75676528	75676529	rs62316310	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	4q13.3	BTC	rs62316310-A	0.2603	5E-11		0.0176	[0.012-0.023] unit increase	Affymetrix [19819130] (imputed)	N
1162	chr4	75689111	75689112	rs59882675	29903748	Debiec H	2018-06-14	J Am Soc Nephrol	Transethnic, Genome-Wide Analysis Reveals Immune-Related Risk Alleles and Phenotypic Correlates in Pediatric Steroid-Sensitive Nephrotic Syndrome.	Childhood steroid-sensitive nephrotic syndrome	244 European ancestry cases, 2,552 European ancestry controls, 56 African cases, 454 African controls, 85 Maghrebian cases, 261 Maghrebian controls	NA	4q13.3	intergenic	rs59882675-?		6E-8				Illumina [at least 7529344] (imputed)	N
1162	chr4	75713367	75713368	rs10518128	25387704	Malone SM	2014-12-01	Psychophysiology	Heritability and molecular-genetic basis of resting EEG activity: a genome-wide association study.	Electroencephalogram traits	2,383 European ancestry adolescents and 1,643 European ancestry adults from 1,613 families	NA	4q13.3	BTC	rs10518128-?	NR	7E-6	(Delta power, Cz)	0.092	[0.053-0.131] unit decrease	Illumina [527829]	N
1162	chr4	75746664	75746665	rs6854845	25866641	Xu W	2015-03-19	Biomark Res	A genome wide association study on Newfoundland colorectal cancer patients' survival outcomes.	Survival in rectal cancer	171 European ancestry cases	NA	4q13.3	intergenic	rs6854845-?		9E-7	(overall survival)	4.12	[2.34-7.26]	Illumina [729737]	N
1162	chr4	75746664	75746665	rs6854845	25866641	Xu W	2015-03-19	Biomark Res	A genome wide association study on Newfoundland colorectal cancer patients' survival outcomes.	Survival in rectal cancer	171 European ancestry cases	NA	4q13.3	intergenic	rs6854845-?		6E-7	(disease-free survival)	3.31	[2.07-5.30]	Illumina [729737]	N
1163	chr4	75808540	75808541	rs17248137	29210060	Koster R	2017-12-06	Int J Cancer	Genome-wide association study identifies the GLDC/IL33 locus associated with survival of osteosarcoma patients.	Overall survival in osteosarcoma	523 European ancestry individuals	109 Brazilian ancestry individuals	4q13.3	NR	rs17248137-G	NR	2E-6		2.14	[1.57-2.93]	Illumina [510856]	N
1163	chr4	75861966	75861967	rs17248887	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	4q13.3	NR	rs17248887-?	NR	2E-41				Affymetrix [NR]	N
1164	chr4	75949595	75949596	rs72660383	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	4q13.3		rs72660383-C	NR	2E-8		0.0261	[0.017-0.035] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
1164	chr4	75950704	75950705	rs10518133	31263063	Dufek S	2019-07-01	J Am Soc Nephrol	Genetic Identification of Two Novel Loci Associated with Steroid-Sensitive Nephrotic Syndrome.	Childhood steroid-sensitive nephrotic syndrome	422 European ancestry cases, 5,642 European ancestry controls	NA	4q13.3	PARM1	rs10518133-A	0.06	3E-8		1.96	[1.57-2.45]	Illumina [5216266] (imputed)	N
1164	chr4	75989926	75989927	rs142771187	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	4q13.3	NR	rs142771187-?	NR	1E-27	(CXCL10)	2.11235	[1.73-2.49] unit increase	Illumina [11901634] (imputed)	N
1164	chr4	75991843	75991844	rs7690978	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interferon gamma-induced protein 10 levels	3,685 Finnish ancestry individuals	NA	4q13.3	NR	rs7690978-G		1E-6		0.1247	[0.074-0.175] SD units decrease	NR [10700000] (imputed)	N
1165	chr4	76030920	76030921	rs1426063	23166209	Smith JG	2012-11-19	Circ Cardiovasc Genet	Impact of ancestry and common genetic variants on QT interval in African Americans.	QT interval	13,105 African American individuals	NA	4q13.3	NR	rs1426063-A	0.55	8E-6		1.18	[0.67-1.69] unit decrease	Affymetrix, Illumina [2800000] (imputed)	N
1166	chr4	76159520	76159521	rs113831257	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interferon gamma-induced protein 10 levels	3,685 Finnish ancestry individuals	NA	4q13.3	NR	rs113831257-G		3E-8		0.3592	[0.23-0.49] SD units decrease	NR [10700000] (imputed)	N
1166	chr4	76165274	76165275	rs10434093	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung adenocarcinoma	11,273 European ancestry cases,  55,483 European ancestry controls	NA	4q13.3	PARM1, LOC441025	rs10434093-G	0.885137369	3E-6		1.1294919	[1.07-1.19]	Illumina [10439017] (imputed)	N
1166	chr4	76176730	76176731	rs17000400	29603369	Naito T	2018-03-30	J Gastroenterol Hepatol	Clinical and genetic risk factors for decreased bone mineral density in Japanese patients with inflammatory bowel disease.	Bone mineral density (femoral neck) in inflammatory bowel disease	254 Japanese ancestry cases	NA	4q13.3	PARM1	rs17000400-C	NR	2E-7		0.4654	[NR] unit increase	Affymetrix [4384682] (imputed)	N
1166	chr4	76184618	76184619	rs2172591	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	4q13.3	RCHY1	rs2172591-?	NR	9E-6	(PC 38:4)	0.1997783	[0.11-0.29] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1166	chr4	76207569	76207570	rs7689350	25763902	Draaken M	2015-03-12	PLoS Genet	Genome-wide association study and meta-analysis identify ISL1 as genome-wide significant susceptibility gene for bladder exstrophy.	Classic bladder exstrophy	208 European ancestry cases, 1,703 European ancestry controls	NA	4q13.3	NR	rs7689350-C	0.115	5E-6		1.93	[1.45-2.55]	Illumina [7261187] (imputed)	N
1166	chr4	76244431	76244432	rs143048919	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	4q21.1	NR	rs143048919-?	NR	7E-23	(CXCL10)	1.50199	[1.2-1.8] unit increase	Illumina [11901634] (imputed)	N
1166	chr4	76264947	76264948	rs36026923	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	4q21.1		rs36026923-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1167	chr4	76288114	76288115	rs1395360	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	4q21.1	NR	rs1395360-C	0.399377	4E-14		0.014221	[0.011-0.018] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1167	chr4	76332974	76332975	rs2903698	22210626	Mead S	2011-12-30	Hum Mol Genet	Genome-wide association study in multiple human prion diseases suggests genetic risk factors additional to PRNP.	Prion diseases	1,281 European ancestry cases, 6,015 European ancestry controls, 290 Papua New Guinean ancestry cases, 286 Papua New Guinean ancestry controls	NA	4q21.1	NR	rs2903698-?	NR	6E-6		1.2528	[NR]	Illumina [NR] (imputed)	N
1167	chr4	76340972	76340973	rs56323501	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interferon gamma-induced protein 10 levels	3,685 Finnish ancestry individuals	NA	4q21.1	NR	rs56323501-C		2E-6		0.2632	[0.16-0.37] SD units increase	NR [10700000] (imputed)	N
1167	chr4	76377069	76377070	rs145025545	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	4q21.1	NR	rs145025545-?	NR	3E-6		0.0082439	[0.0048-0.0117] unit decrease	Affymetrix [805426] (imputed)	N
1167	chr4	76395004	76395005	rs6851699	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	4q21.1	NR	rs6851699-C	0.218688	1E-8		0.048419356	[0.032-0.065] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1167	chr4	76395004	76395005	rs6851699	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q21.1	NR	rs6851699-C	0.789097	2E-15				Affymetrix, Illumina [17210439] (imputed)	N
1168	chr4	76416386	76416387	rs13137105	22491018	Wang J	2012-04-10	Pharmacogenomics J	Genome-wide association analysis implicates the involvement of eight loci with response to tocilizumab for the treatment of rheumatoid arthritis.	Response to tocilizumab in rheumatoid arthritis	1,157 European and other ancestry rheumatoid arthritis cases	526 European and other ancestry rheumatoid arthritis cases	4q21.1	RCHY1	rs13137105-?	0.38	9E-7	(CTJC, RF-)	6.39	[NR] unit decrease	Illumina [534053]	N
1168	chr4	76425777	76425778	rs11732511	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	4q21.1	NR	rs11732511-T	0.79065	1E-16		0.0196	[0.015-0.024] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
1168	chr4	76456990	76456990	rs574622007	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	4q21.1	THAP6	rs574622007-CT	0.207196	2E-11		0.018754415	[0.013-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1168	chr4	76462315	76462316	rs6535524	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	4q21.1		rs6535524-A	NR	7E-10		0.0119	[0.0082-0.0156] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1168	chr4	76462315	76462316	rs6535524	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q21.1	NR	rs6535524-A	0.557499	4E-15				Affymetrix, Illumina [24588908] (imputed)	N
1168	chr4	76481729	76481730	rs17000647	22658654	Chung SJ	2012-05-30	Parkinsonism Relat Disord	Genomic determinants of motor and cognitive outcomes in Parkinson's disease.	Parkinson's disease (motor and cognition)	443 European ancestry cases	NA	4q21.1	C4orf26	rs17000647-?	NR	5E-6	(cognitive outcome)	5.58	[3.00-10.38]	NR [198345]	N
1168	chr4	76491424	76491425	rs17214627	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interferon gamma-induced protein 10 levels	3,685 Finnish ancestry individuals	NA	4q21.1	NR	rs17214627-G		7E-6		0.3124	[0.18-0.45] SD units increase	NR [10700000] (imputed)	N
1168	chr4	76495490	76495491	rs78295376	26503763	Song J	2015-10-27	Mol Psychiatry	Genome-wide association study identifies SESTD1 as a novel risk gene for lithium-responsive bipolar disorder.	Subjective response to lithium treatment in bipolar disorder	1,639 European ancestry responder cases, 1,059 European ancestry non-responder cases	NA	4q21.1	USO1, TMSL3, G3BP2, FRG2, CDKL2, C4orf26	rs78295376-C	0.1	7E-7		1.75	[NR]	NR [> 8000000] (imputed)	N
1168	chr4	76496041	76496042	rs76515785	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	4q21.1	NR	rs76515785-?	NR	5E-29	(CXCL10)	1.88782	[1.56-2.22] unit increase	Illumina [11901634] (imputed)	N
1168	chr4	76496816	76496817	rs6835992	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	4q21.1	NR	rs6835992-G	0.7049	6E-11		0.0287	[0.02-0.037] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1168	chr4	76520650	76520651	rs6821144	28604728	Litchfield K	2017-06-12	Nat Genet	Identification of 19 new risk loci and potential regulatory mechanisms influencing susceptibility to testicular germ cell tumor.	Testicular germ cell tumor	5,518 European ancestry cases, 19,055 European ancestry controls	1,801 European ancestry cases, 4,027 European ancestry controls	4q21.1	CDKL2, G3BP2	rs6821144-G	0.89	2E-11		1.22	[1.14-1.30]	Illumina [at least 371504] (imputed)	N
1168	chr4	76521524	76521525	rs56229013	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Monokine induced by gamma interferon levels	3,685 Finnish ancestry individuals	NA	4q21.1	NR	rs56229013-C	NR	5E-6		0.3717	[0.21-0.53] SD units increase	NR [10700000] (imputed)	N
1168	chr4	76535085	76535086	rs2055997	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	4q21.1	NR	rs2055997-G	0.7014	7E-10		0.0313	[0.021-0.041] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1168	chr4	76542748	76542749	rs6852678	25886283	Chang X	2015-04-17	PLoS One	Genome-wide association study of serum minerals levels in children of different ethnic background.	Magnesium levels	2,317 European ancestry children, 1,283 African American ancestry children	NA	4q21.1		rs6852678-T	NR	8E-6		0.0235	[NR] mg/dl increase	Illumina [up to 509150]	N
1169	chr4	76568480	76568481	rs11097044	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	4q21.1		rs11097044-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1169	chr4	76572190	76572191	rs2175766	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	4q21.1		rs2175766-C	NR	3E-8		0.0119	[0.0078-0.016] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
1169	chr4	76572190	76572191	rs2175766	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	4q21.1	G3BP2	rs2175766-A	0.460262	2E-8		0.0107801	[0.007-0.0145] unit decrease	Affymetrix [NR] (imputed)	N
1169	chr4	76628350	76628351	rs3821977	30715261	Brouwer WP	2019-02-02	Clin Infect Dis	Genome Wide Association Study Identifies Genetic Variants Associated With Early And Sustained Response To (Peg)Interferon In Chronic Hepatitis B Patients: The GIANT-B Study.	Response to (pegylated) interferon in HBeAg-negative hepatitis B	161 Asian, European, African and other ancestry cases, 253 Asian, European, African and other ancestry controls	NA	4q21.1	G3BP2, USO1	rs3821977-A	0.8304	2E-6		1.126	[0.66-1.59] unit increase	Illumina [8102086] (imputed)	N
1169	chr4	76643451	76643452	rs6838240	25886283	Chang X	2015-04-17	PLoS One	Genome-wide association study of serum minerals levels in children of different ethnic background.	Magnesium levels	2,317 European ancestry children, 1,283 African American ancestry children	NA	4q21.1	NR	rs6838240-C	NR	7E-6	(EA)	0.037	(0.02095-0.05305) mg/dl increase	Illumina [up to 509150]	N
1169	chr4	76643451	76643452	rs6838240	25886283	Chang X	2015-04-17	PLoS One	Genome-wide association study of serum minerals levels in children of different ethnic background.	Magnesium levels	2,317 European ancestry children, 1,283 African American ancestry children	NA	4q21.1	NR	rs6838240-C	NR	2E-6		0.0372	[NR] mg/dl increase	Illumina [up to 509150]	N
1169	chr4	76658429	76658430	rs34868353	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		USO1	rs34868353-?	NR	2E-10	(male)	2.01441	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1170	chr4	76736609	76736610	rs182692989	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Monokine induced by gamma interferon levels	3,685 Finnish ancestry individuals	NA	4q21.1	NR	rs182692989-C	NR	9E-7		0.4717	[0.28-0.66] SD units increase	NR [10700000] (imputed)	N
1170	chr4	76807868	76807869	rs149858046	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interferon gamma-induced protein 10 levels	3,685 Finnish ancestry individuals	NA	4q21.1	NR	rs149858046-C		1E-6		0.7986	[0.48-1.12] SD units increase	NR [10700000] (imputed)	N
1171	chr4	76830352	76830353	rs7688400	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NAAA	5,364 Icelandic ancestry individuals	NA	4q21.1		rs7688400-T	0.05799	3E-101		0.814984	[0.74-0.89] unit increase	Illumina [7506463] (imputed)	N
1171	chr4	76831957	76831958	rs78105394	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	4q21.1	NR	rs78105394-G	0.047	1E-41	(N-acylethanolamine-hydrolyzing acid amidase, NAAA.3173.49.2)	0.77	[0.65-0.89] unit increase	Affymetrix [10572788] (imputed)	N
1171	chr4	76832855	76832856	rs2135232	28031287	Sasayama D	2016-11-26	Hum Mol Genet	Genome-wide quantitative trait loci mapping of the human cerebrospinal fluid proteome.	Cerebrospinal fluid biomarker levels	133 Japanese ancestry individuals.	NA	4q21.1	NR	rs2135232-?	NR	2E-28	(N-acylethanolamine-hydrolyzing acid amidase)			Illumina [514227]	N
1171	chr4	76835363	76835364	rs1513890	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	4q21.1	NAAA	rs1513890-A	0.04577465	2E-13	(EA, N-acylethanolamine-hydrolyzing acid amidase)	0.7738	[0.57-0.98] unit increase	Affymetrix [509946]	N
1171	chr4	76836433	76836434	rs6829172	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	4q21.1	NAAA	rs6829172-?	NR	8E-6		0.347	[0.18-0.51] unit increase	Illumina [at least 13000000] (imputed)	N
1171	chr4	76842873	76842874	rs10518142	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NAAA	5,364 Icelandic ancestry individuals	NA	4q21.1		rs10518142-T	0.2646	1E-263		0.664616	[0.63-0.7] unit decrease	Illumina [7506463] (imputed)	N
1171	chr4	76844442	76844443	rs58317633	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q21.1	NAAA	rs58317633-T	0.73328125	4E-159	(NAAA, 3173_49_2)	0.7001652	[0.65-0.75] unit increase	Illumina [> 1000000] (imputed)	N
1171	chr4	76847214	76847215	rs3733235	32492067	Ruffieux H	2020-06-03	PLoS Comput Biol	A fully joint Bayesian quantitative trait locus mapping of human protein abundance in plasma.	Protein quantitative trait loci	394 European ancestry individuals	548 European ancestry individuals	4q21.1	NR	rs3733235-?	NR	5E-14	(ASAHL)			Illumina [~ 4000000] (imputed)	N
1171	chr4	76848230	76848231	rs9996608	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	4q21.1	NAAA	rs9996608-T	0.3	4E-101	(N-acylethanolamine-hydrolyzing acid amidase, NAAA.3173.49.2)	0.55	[0.49-0.61] unit decrease	Affymetrix [10572788] (imputed)	N
1171	chr4	76848953	76848954	rs72651379	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q21.1	CXCL11	rs72651379-A	0.8690625	3E-13	(CXCL11, 3038_9_2)	0.26002857	[0.19-0.33] unit increase	Illumina [> 1000000] (imputed)	N
1171	chr4	76854117	76854118	rs112197434	31320639	Hillary RF	2019-07-18	Nat Commun	Genome and epigenome wide studies of neurological protein biomarkers in the Lothian Birth Cohort 1936.	Neurological blood protein biomarker levels	750 European ancestry individuals	NA	4q21.1	NAAA	rs112197434-T	0.2297	3E-19	(NAAA)	0.54555	[0.43-0.66] unit decrease	Illumina [8683751] (imputed)	N
1171	chr4	76856439	76856440	rs11732759	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NAAA	5,364 Icelandic ancestry individuals	NA	4q21.1		rs11732759-A	0.3953	8E-100		0.391485	[0.36-0.43] unit increase	Illumina [7506463] (imputed)	N
1171	chr4	76857308	76857309	rs4859571	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	4q21.1	NAAA, CXCL9, ART3, CXCL11, SDAD1, AC110615.1, RP11-630D6.5, AC112719.2, RP11-630D6.1	rs4859571-T	0.2402207	1E-46	(N-acylethanolamine-hydrolyzing acid amidase)	0.7054	[0.61-0.8] unit decrease	Affymetrix [509946]	N
1171	chr4	76861858	76861859	rs2292533	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	4q21.1	NR	rs2292533-T	0.411	1E-32	(N-acylethanolamine-hydrolyzing acid amidase, NAAA.3173.49.2)	0.29	[0.25-0.33] unit increase	Affymetrix [10572788] (imputed)	N
1171	chr4	76883697	76883698	rs55876513	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Monokine induced by gamma interferon levels	3,685 Finnish ancestry individuals	NA	4q21.1	NR	rs55876513-G	NR	8E-11		0.166	[0.12-0.22] SD units decrease	NR [10700000] (imputed)	N
1171	chr4	76889387	76889388	rs2273	20834067	Yashin AI	2010-09-01	Aging (Albany NY)	Joint influence of small-effect genetic variants on human longevity.	Longevity	1,173 individuals	NA	4q21.1	SDAD1	rs2273-?	NR	1E-6	(less than or equal to)			NR [~ 550000]	N
1171	chr4	76898103	76898104	rs139707122	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Hippocampal volume	305 European ancestry cognitively normal individuals, 581 European ancestry mild cognitive impairment cases, 190 European ancestry Alzheimer's disease dementia cases	NA	4q21.1	SDAD1, PPEF2, NAAA, CXCL9, ART3, CXCL10, CXCL11, RPL36P8	rs139707122-C	0.02	7E-7		0.98	[0.59-1.37] unit decrease	Illumina [8056701] (imputed)	N
1171	chr4	76899175	76899176	rs192716315	31217265	Sliz E	2019-06-19	J Med Genet	Genome-wide association study identifies seven novel loci associating with circulating cytokines and cell adhesion molecules in Finns.	Interferon gamma-induced protein 10 levels	13,577 Finnish ancestry individuals	NA	4q21.1	CXCL10	rs192716315-C	0.003	3E-13		1.513	unit increase	Illumina [NR] (imputed)	N
1171	chr4	76902571	76902572	rs139123280	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Lung cancer	2,479 White British ancestry cases, 272,351 White British ancestry controls	NA	4q21.1		rs139123280-?	NR	5E-6		3.49424	[2.96-4.03]	NR [673172]	N
1171	chr4	76924932	76924933	rs10031452	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	4q21.1	CXCL11	rs10031452-C	0.529	2E-21	(C-X-C motif chemokine 11, CXCL11.3038.9.2)	0.23	[0.19-0.27] unit decrease	Affymetrix [10572788] (imputed)	N
1171	chr4	76933483	76933484	rs1554013	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	4q21.1	NR	rs1554013-T	0.454	6E-6	(IFNgamma_CXCL9_of_Monocytes)			Illumina [5084123] (imputed)	N
1172	chr4	76942942	76942943	rs3921	30134952	Traglia M	2018-08-22	Genome Med	Cross-genetic determination of maternal and neonatal immune mediators during pregnancy.	Neonatal cytokine/chemokine levels (fetal genetic effect)	764 Hispanic, European, Asian, South Asian or African American individuals	NA	4q21.1	CXCL9, CXCL10, CXCL11	rs3921-C	0.29	2E-14	(CXCL11)	0.24	[0.18-0.3] unit increase	Affymetrix [622716]	N
1172	chr4	76943946	76943947	rs11548618	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	4q21.1	CXCL10	rs11548618-A	0.009	2E-49	(C-X-C motif chemokine 10, CXCL10.4141.79.1)	1.92	[1.67-2.17] unit increase	Affymetrix [10572788] (imputed)	N
1172	chr4	76943946	76943947	rs11548618	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	4q21.1	NR	rs11548618-?	NR	2E-37	(CXCL10)	1.82167	[1.54-2.1] unit increase	Illumina [11901634] (imputed)	N
1172	chr4	76943946	76943947	rs11548618	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	4q21.1	CXCL10, ART3	rs11548618-A	0.0115346	5E-21	(EA, C-X-C motif chemokine 10)	1.841	[1.47-2.22] unit increase	Affymetrix [509946]	N
1172	chr4	76943946	76943947	rs11548618	25147954	Enroth S	2014-08-22	Nat Commun	Strong effects of genetic and lifestyle factors on biomarker variation and use of personalized cutoffs.	C-X-C motif chemokine 10 levels	up to 653 individuals	up to 317 individuals	4q21.1	CXCL10	rs11548618-A	0.034716	7E-37		1.8	[1.53-2.07] unit increase	Illumina [4840842] (imputed)	N
1172	chr4	76948298	76948299	rs4859589	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q21.1	CXCL10	rs4859589-G	0.5053125	5E-8	(CXCL10, 4141_79_1)	0.13265991	[0.085-0.18] unit increase	Illumina [> 1000000] (imputed)	N
1172	chr4	76955193	76955194	rs4356932	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	4q21.1	ART3, CXCL11, RP11-630D6.5, CXCL9, CXCL10, RP11-630D6.1	rs4356932-T	0.4461229	4E-14	(EA, C-X-C motif chemokine 11)	0.3288	[0.24-0.41] unit increase	Affymetrix [509946]	N
1172	chr4	76983991	76983992	rs6816425	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NAAA	5,364 Icelandic ancestry individuals	NA	4q21.1		rs6816425-C	0.3619	7E-105		0.408422	[0.37-0.45] unit decrease	Illumina [7506463] (imputed)	N
1172	chr4	76986018	76986019	rs5005115	32492067	Ruffieux H	2020-06-03	PLoS Comput Biol	A fully joint Bayesian quantitative trait locus mapping of human protein abundance in plasma.	Protein quantitative trait loci	394 European ancestry individuals	548 European ancestry individuals	4q21.1	NR	rs5005115-?	NR	6E-7	(I-TAC)			Illumina [~ 4000000] (imputed)	N
1172	chr4	76988602	76988606	rs55894859	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	4q21.1	NR	rs55894859-G	0.121	4E-24	(Ecto-ADP-ribosyltransferase 3, ART3.10970.3.3)	0.38	[0.3-0.46] unit decrease	Affymetrix [10572788] (imputed)	N
1172	chr4	76992784	76992785	rs6841333	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Monokine induced by gamma interferon levels	3,685 Finnish ancestry individuals	NA	4q21.1	NR	rs6841333-G	NR	2E-10		0.1644	[0.11-0.21] SD units decrease	NR [10700000] (imputed)	N
1172	chr4	76997260	76997261	rs7693693	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CXCL11	5,364 Icelandic ancestry individuals	NA	4q21.1		rs7693693-T	0.1297	4E-20		0.254176	[0.2-0.31] unit decrease	Illumina [7506463] (imputed)	N
1172	chr4	76997260	76997261	rs7693693	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	4q21.1	NR	rs7693693-T	0.07	2E-17	(Ecto-ADP-ribosyltransferase 3, ART3.7970.315.3)	0.43	[0.33-0.53] unit decrease	Affymetrix [10572788] (imputed)	N
1172	chr4	77000440	77000441	rs4859610	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ART3	5,368 Icelandic ancestry individuals	NA	4q21.1		rs4859610-A	0.2153	2E-26		0.224804	[0.18-0.27] unit increase	Illumina [7506463] (imputed)	N
1172	chr4	77000440	77000441	rs4859610	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ART3	5,367 Icelandic ancestry individuals	NA	4q21.1		rs4859610-A	0.2153	2E-32		0.247483	[0.21-0.29] unit increase	Illumina [7506463] (imputed)	N
1172	chr4	77000440	77000441	rs4859610	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q21.1	ART3	rs4859610-G	0.778125	5E-21	(ART3, 10970_3_3)	0.2544865	[0.2-0.31] unit decrease	Illumina [> 1000000] (imputed)	N
1172	chr4	77000440	77000441	rs4859610	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q21.1	ART3	rs4859610-G	0.778125	3E-18	(ART3, 7970_315_3)	0.23637794	[0.18-0.29] unit decrease	Illumina [> 1000000] (imputed)	N
1172	chr4	77000440	77000441	rs4859610	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	4q21.1	ART3	rs4859610-G	0.774	3E-32	(Ecto-ADP-ribosyltransferase 3, ART3.7970.315.3)	0.34	[0.28-0.4] unit decrease	Affymetrix [10572788] (imputed)	N
1172	chr4	77006804	77006805	rs6847950	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	4q21.1		rs6847950-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1172	chr4	77007531	77007532	rs55680121	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q21.1	NR	rs55680121-G	0.01045	2E-11	(ALDH5A1)	0.3571	NR unit increase	Illumina [1671387] (imputed)	N
1172	chr4	77017679	77017680	rs4440243	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	4q21.1	NR	rs4440243-C	0.4217	1E-8		0.0246	[0.016-0.033] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1172	chr4	77023498	77023499	rs12331871	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ART3	5,368 Icelandic ancestry individuals	NA	4q21.1		rs12331871-G	0.1746	9E-8		0.121073	[0.077-0.166] unit increase	Illumina [7506463] (imputed)	N
1172	chr4	77023498	77023499	rs12331871	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ART3	5,367 Icelandic ancestry individuals	NA	4q21.1		rs12331871-G	0.1746	2E-8		0.127202	[0.083-0.171] unit increase	Illumina [7506463] (imputed)	N
1172	chr4	77024395	77024396	rs79955867	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Hippocampal volume	305 European ancestry cognitively normal individuals, 581 European ancestry mild cognitive impairment cases, 190 European ancestry Alzheimer's disease dementia cases	NA	4q21.1	ART3, CXCL9, CXCL10, CXCL11, RPL36P8, NUP54, SCARB2	rs79955867-T	0.01	3E-7		1.23	[0.76-1.7] unit decrease	Illumina [8056701] (imputed)	N
1172	chr4	77028449	77028450	rs11097236	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	4q21.1		rs11097236-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1172	chr4	77030398	77030399	rs56062839	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	4q21.1	ART3	rs56062839-C	0.434	3E-35	(Ecto-ADP-ribosyltransferase 3, ART3.10970.3.3)	0.3	[0.26-0.34] unit increase	Affymetrix [10572788] (imputed)	N
1172	chr4	77044425	77044426	rs72655522	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	4q21.1	NR	rs72655522-C	0.01	4E-6		1.1111112	[-0.94689-3.16911]	Affymetrix [at least 143006] (imputed)	N
1172	chr4	77053833	77053834	rs61750814	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first birth	542,901 European ancestry individuals	NA	4q21.1	NUP54	rs61750814-T	0.8366	6E-10		0.0796	[0.054-0.105] unit increase	NR [9744772] (imputed)	N
1173	chr4	77096117	77096118	rs17001561	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	4q21.1	NA	rs17001561-A	0.1548	2E-10		0.0145	[0.01-0.019] unit increase	NR [~ 27400000] (imputed)	N
1173	chr4	77110364	77110365	rs6825004	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	4q21.1	SCARB2	rs6825004-C	0.6912	1E-9		0.0622	[0.042-0.082] unit increase	NR [7784415] (imputed)	N
1173	chr4	77129567	77129568	rs17001654	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	4q21.1	NR	rs17001654-C	NR	6E-7		0.02	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
1173	chr4	77129567	77129568	rs17001654	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	4q21.1	SCARB2	rs17001654-C	0.8438	2E-6				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1173	chr4	77129567	77129568	rs17001654	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	4q21.1	SCARB2	rs17001654-C	0.8438	2E-7		0.0273	[0.017-0.038] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1173	chr4	77129567	77129568	rs17001654	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	4q21.1	NR	rs17001654-C	0.845056080783232	5E-12		0.029506063	unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1173	chr4	77129567	77129568	rs17001654	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	4q21.1	SCARB2	rs17001654-G	0.154	5E-9		0.03	[0.02-0.041] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1173	chr4	77129567	77129568	rs17001654	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	4q21.1	SCARB2	rs17001654-G	0.153	8E-9	(EA)	0.031	[0.02-0.041] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1173	chr4	77129567	77129568	rs17001654	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	4q21.1	SCARB2	rs17001654-G	0.153	2E-6	(EA, women)	0.032	[0.019-0.045] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1173	chr4	77135786	77135787	rs116533523	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	4q21.1	NR	rs116533523-G	NR	4E-13		0.0449	[0.033-0.057] unit increase	Affymetrix [9000000] (imputed)	N
1173	chr4	77138459	77138460	rs920608	33654092	Shigemizu D	2021-03-03	Transl Psychiatry	Ethnic and trans-ethnic genome-wide association studies identify new loci influencing Japanese Alzheimer's disease risk.	Alzheimer's disease	3,962 Japanese ancestry cases, 4,074 Japanese ancestry controls	1,216 Japanese ancestry cases, 2,446 Japanese ancestry controls	4q21.1	FAM47E	rs920608-C	0.046	5E-9		0.65	[0.57-0.75]	Affymetrix [4852957] (imputed)	N
1173	chr4	77147968	77147969	rs4101061	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	4q21.1	FAM47E	rs4101061-A	0.7107	5E-19		0.0912	[0.071-0.111] unit decrease	NR [7784415] (imputed)	N
1173	chr4	77155741	77155742	rs72858533	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q21.1	NR	rs72858533-G	0.0876152	8E-11				Affymetrix, Illumina [24246363] (imputed)	N
1173	chr4	77155741	77155742	rs72858533	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q21.1	NR	rs72858533-G	0.0870719	7E-12				Affymetrix, Illumina [20825802] (imputed)	N
1173	chr4	77163721	77163722	rs61216514	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	4q21.1	NR	rs61216514-A	0.097385	6E-12		0.021079	[0.015-0.027] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
1173	chr4	77163721	77163722	rs61216514	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	4q21.1	NR	rs61216514-A	0.097756	3E-12		0.022633	[0.016-0.029] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
1173	chr4	77166007	77166009	rs34521402	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	4q21.1	FAM47E	rs34521402-C	0.098097	2E-10		0.023805235	[0.016-0.031] unit increase	Affymetrix [93095623] (imputed)	N
1173	chr4	77167241	77167242	rs1348206	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	4q21.1	NR	rs1348206-G	NR	9E-11		0.0241	[0.017-0.031] unit increase	Affymetrix [9000000] (imputed)	N
1173	chr4	77167241	77167242	rs1348206	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x long total sleep time interaction (2df test)	2,933 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, up to 7,870 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,975 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 32,171 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 616 East Asian ancestry long sleepers, up to 9,486 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 929 African American controls, 2,517 East Asian ancestry controls, up to 38,126 European ancestry controls, 10,063 Hispanic controls	4q21.1	FAM47E	rs1348206-?	NR	1E-8		0.005354	[0.003-0.0077] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
1173	chr4	77176847	77176848	rs12643261	32201043	Smeland OB	2020-02-08	Biol Psychiatry	Genome-wide Association Analysis of Parkinson's Disease and Schizophrenia Reveals Shared Genetic Architecture and Identifies Novel Risk Loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	NA	4q21.1	FAM47E:FAM47E-STBD1:FAM47E-STBD1	rs12643261-T		4E-11		0.1585	[0.11-0.21] unit decrease	Illumina [NR]	N
1173	chr4	77178235	77178236	rs117724978	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	4q21.1	NR	rs117724978-?	NR	2E-27	(CXCL10)	1.88114	[1.54-2.22] unit increase	Illumina [11901634] (imputed)	N
1173	chr4	77189417	77189418	rs62300803	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	4q21.1		rs62300803-C	0.781337	3E-8		0.0259549	[0.017-0.035] unit decrease	NR [11722792] (imputed)	N
1173	chr4	77193544	77193545	rs1441911	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	4q21.1	NR	rs1441911-G	0.783231	6E-9		0.0215233	[0.014-0.029] unit increase	Affymetrix [16577313] (imputed)	N
1173	chr4	77197396	77197397	rs28636815	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	4q21.1	NR	rs28636815-G	0.377474	2E-21		0.011673	[0.0092-0.0142] unit increase	Affymetrix [16585854] (imputed)	N
1173	chr4	77197396	77197397	rs28636815	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	4q21.1	NR	rs28636815-G	0.377474	3E-14		0.011004	[0.0081-0.0139] unit increase	Affymetrix [16585866] (imputed)	N
1173	chr4	77197520	77197521	rs116809741	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	4q21.1		rs116809741-T	NR	1E-15		0.0195	[0.015-0.024] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
1173	chr4	77197520	77197521	rs116809741	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	4q21.1	FAM47E	rs116809741-G	0.551028	8E-16		0.00196876	[0.0015-0.0024] unit decrease	Affymetrix [13995440] (imputed)	N
1173	chr4	77197650	77197651	rs28507491	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	4q21.1	NR	rs28507491-A	0.37666999999999995	1E-51		0.0125797	[0.011-0.014] unit increase	Affymetrix [16582909] (imputed)	N
1173	chr4	77197650	77197651	rs28507491	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	4q21.1	NR	rs28507491-A	0.37567799999999996	2E-31		0.0135448	[0.011-0.016] unit increase	Affymetrix [16582621] (imputed)	N
1173	chr4	77197650	77197651	rs28507491	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	4q21.1	NR	rs28507491-A	0.37666999999999995	2E-38		0.0124772	[0.011-0.014] unit increase	Affymetrix [16582965] (imputed)	N
1173	chr4	77197650	77197651	rs28507491	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	4q21.1	NR	rs28507491-A	0.37567799999999996	6E-29		0.0139975	[0.012-0.016] unit increase	Affymetrix [16582614] (imputed)	N
1173	chr4	77198053	77198054	rs6854006	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	4q21.1	FAM47E-STBD1	rs6854006-T	0.3632	6E-21		0.0912	[0.072-0.11] unit decrease	NR [7784415] (imputed)	N
1173	chr4	77198565	77198566	rs6858344	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	4q21.1	FAM47E	rs6858344-A	0.38	2E-12		7.0	z-score increase	Affymetrix [4311822] (imputed)	N
1173	chr4	77198985	77198986	rs6812193	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q21.1	NR	rs6812193-T	0.313508	3E-10				Affymetrix, Illumina [24588908] (imputed)	N
1173	chr4	77198985	77198986	rs6812193	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	4q21.1	NR	rs6812193-T	0.374601	1E-11		0.012888	[0.0092-0.0166] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1173	chr4	77198985	77198986	rs6812193	28892059	Chang D	2017-09-11	Nat Genet	A meta-analysis of genome-wide association studies identifies 17 new Parkinson's disease risk loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	5,851 European ancestry cases, 5,866 European ancestry controls	4q21.1	FAM47E	rs6812193-C	0.63	1E-14		1.0869565	[1.06-1.11]	Illumina [11933700] (imputed)	N
1173	chr4	77198985	77198986	rs6812193	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Parkinson's disease	9,619 European ancestry cases, 324,522 European ancestry controls	NA	4q21.1	FAM47E	rs6812193-?	NR	7E-11		1.1148272	[1.08-1.15]	Illumina [12438219] (imputed)	N
1173	chr4	77198985	77198986	rs6812193	25064009	Nalls MA	2014-07-27	Nat Genet	Large-scale meta-analysis of genome-wide association data identifies six new risk loci for Parkinson's disease.	Parkinson's disease	13,708 European ancestry cases, 95,282 European ancestry controls	5,353 European ancestry cases, 5,551 European ancestry controls	4q21.1	SCARB2, FAM47E	rs6812193-C	0.636	3E-11		1.1	[1.07-1.13]	Illumina [7893274] (imputed)	N
1173	chr4	77198985	77198986	rs6812193	21738487	Do CB	2011-06-23	PLoS Genet	Web-based genome-wide association study identifies two novel loci and a substantial genetic component for Parkinson's disease.	Parkinson's disease	3,426 European ancestry cases, 29,624 European ancestry controls	NA	4q21.1	SCARB2	rs6812193-C	0.64	8E-10		1.19	[1.12-1.27]	Illumina [522782]	N
1173	chr4	77198985	77198986	rs6812193	19915575	Simon-Sanchez J	2009-11-15	Nat Genet	Genome-wide association study reveals genetic risk underlying Parkinson's disease.	Parkinson's disease	1,713 European ancestry cases, 3,978 European ancestry controls	3,361 European ancestry cases, 4,573 European ancestry controls	4q21.1	STBD1	rs6812193-C	0.66	4E-7		1.12	[NR]	Illumina [463185]	N
1174	chr4	77202309	77202310	rs115777572	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	4q21.1	NR	rs115777572-C	NR	3E-10		0.0404	[0.028-0.053] unit increase	Affymetrix [9000000] (imputed)	N
1174	chr4	77202309	77202310	rs115777572	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	4q21.1	NR	rs115777572-C	NR	2E-10		0.0408	[0.028-0.053] unit decrease	Affymetrix [9000000] (imputed)	N
1174	chr4	77211818	77211819	rs138861398	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Systolic blood pressure (long-term average)	5,304 African American individuals	6,500 African American individuals	4q21.1	NR	rs138861398-A	0.8526	2E-7		2.4117	[1.5-3.32] mmHg decrease	Affymetrix, Illumina [NR] (imputed)	N
1174	chr4	77232130	77232131	rs115137643	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	4q21.1	NR	rs115137643-T	NR	4E-9		0.0502	[0.033-0.067] unit decrease	Affymetrix [9000000] (imputed)	N
1174	chr4	77232130	77232131	rs115137643	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	4q21.1	NR	rs115137643-T	NR	3E-9		0.0507	[0.034-0.068] unit increase	Affymetrix [9000000] (imputed)	N
1174	chr4	77277489	77277490	rs77855175	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	4q21.1	NR	rs77855175-C	NR	6E-14		0.0442	[0.033-0.056] unit increase	Affymetrix [9000000] (imputed)	N
1174	chr4	77284526	77284527	rs138981058	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interferon gamma-induced protein 10 levels	3,685 Finnish ancestry individuals	NA	4q21.1	NR	rs138981058-C		2E-13		1.0647	[0.78-1.35] SD units decrease	NR [10700000] (imputed)	N
1174	chr4	77289407	77289408	rs72657823	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	4q21.1	NR	rs72657823-A	NR	7E-17		0.0421	[0.032-0.052] unit increase	Affymetrix [9000000] (imputed)	N
1174	chr4	77289407	77289408	rs72657823	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	4q21.1	NR	rs72657823-A	NR	5E-14		0.038	[0.028-0.048] unit decrease	Affymetrix [9000000] (imputed)	N
1174	chr4	77289407	77289408	rs72657823	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	4q21.1	NR	rs72657823-A	NR	4E-17		0.0425	[0.033-0.052] unit decrease	Affymetrix [9000000] (imputed)	N
1174	chr4	77304021	77304022	rs6820797	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	4q21.1	NR	rs6820797-G	NR	2E-11		0.0201	[0.014-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
1174	chr4	77327691	77327692	rs115671087	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	4q21.1	NR	rs115671087-A	NR	4E-9		0.0373	[0.025-0.05] unit decrease	Affymetrix [9000000] (imputed)	N
1174	chr4	77327691	77327692	rs115671087	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	4q21.1	NR	rs115671087-A	NR	2E-10		0.0403	[0.028-0.053] unit increase	Affymetrix [9000000] (imputed)	N
1175	chr4	77346879	77346880	rs2036916	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	4q21.1		rs2036916-?	NR	8E-11				NR [~ 8900000] (imputed)	N
1175	chr4	77357128	77357129	rs78134132	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	4q21.1	NR	rs78134132-?	NR	2E-27	(CXCL10)	1.88226	[1.54-2.22] unit increase	Illumina [11901634] (imputed)	N
1175	chr4	77358986	77358987	rs10023335	31630189	Casanova F	2019-10-20	Hum Mol Genet	A genome-wide association study implicates multiple mechanisms influencing raised urinary albumin-creatinine ratio.	Urinary albumin-to-creatinine ratio	437,027 European ancestry individuals	60,130 individuals	4q21.1	SHROOM3	rs10023335-T	0.591	2E-9	(EA)	0.012	[0.0081-0.0159] unit increase	NR [12082474] (imputed)	N
1175	chr4	77358986	77358987	rs10023335	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals, 6,795 African American individuals, 6,324 East Asian ancestry individuals, 2,335 South Asian ancestry individuals, 1,442 Hispanic individuals	NA	4q21.1	SHROOM3	rs10023335-T	NR	5E-13		0.0145	[0.011-0.018] unit increase	Affymetrix, Illumina [8034757] (imputed)	N
1175	chr4	77358986	77358987	rs10023335	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals	NA	4q21.1	SHROOM3	rs10023335-T	0.5932	1E-12		0.01439	[0.01-0.018] unit increase	Affymetrix, Illumina [8603712] (imputed)	N
1175	chr4	77358986	77358987	rs10023335	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Microalbuminuria	51,861 European, African American, East Asian, South Asian or Hispanic ancestry cases, 297,093 European, African American, East Asian, South Asian or Hispanic ancestry controls	NA	4q21.1	SHROOM3	rs10023335-T	NR	4E-10		1.0437292	[1.03-1.06]	Affymetrix, Illumina [8326000] (imputed)	N
1175	chr4	77360430	77360431	rs9992101	20383145	Chambers JC	2010-04-11	Nat Genet	Genetic loci influencing kidney function and chronic kidney disease.	Creatinine levels	23,812 European ancestry individuals	16,626 European ancestry individuals	4q21.1	SHROOM3	rs9992101-?	NR	6E-9				Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1175	chr4	77365890	77365891	rs55940751	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	4q21.1	SHROOM3	rs55940751-C		4E-8		0.216	unit increase	Affymetrix [at least 2696785] (imputed)	N
1175	chr4	77365890	77365891	rs55940751	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	4q21.1	SHROOM3	rs55940751-C		8E-7		0.129	unit increase	Affymetrix [at least 2696785] (imputed)	N
1175	chr4	77366248	77366250	rs568240689	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	4q21.1		rs568240689-C	NR	2E-40		0.0309	[0.026-0.035] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
1175	chr4	77366248	77366250	rs568240689	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	4q21.1	intergenic	rs568240689-C	0.5943	5E-10		0.2119	[0.15-0.28] mmHg increase	Affymetrix [NR] (imputed)	N
1175	chr4	77368846	77368847	rs17319721	26831199	Pattaro C	2016-01-21	Nat Commun	Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function.	Glomerular filtration rate in non diabetics (creatinine)	118,448 European ancestry individuals	36,433 European ancestry individuals	4q21.1	SHROOM3	rs17319721-A	NR	5E-35		0.0113	[0.0095-0.0131] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1175	chr4	77368846	77368847	rs17319721	26831199	Pattaro C	2016-01-21	Nat Commun	Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function.	Glomerular filtration rate (creatinine)	133,413 European ancestry individuals	42,166 European ancestry individuals, up to 16,471 African ancestry individuals, up to 42,296 Asian ancestry individuals	4q21.1	SHROOM3	rs17319721-A	0.43	1E-37	(EA)	0.0114	[0.0096-0.0132] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1175	chr4	77368846	77368847	rs17319721	26831199	Pattaro C	2016-01-21	Nat Commun	Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function.	Chronic kidney disease	12,385 European ancestry cases, 104,780 European ancestry controls	33,972 European ancestry individuals	4q21.1	SHROOM3	rs17319721-A	0.43	8E-6		1.07	[1.04-1.10]	Affymetrix, Illumina [~ 2500000] (imputed)	N
1175	chr4	77368846	77368847	rs17319721	24777453	Auer PL	2014-04-28	Nat Genet	Rare and low-frequency coding variants in CXCR2 and other genes are associated with hematological traits.	Hematocrit	24,814 European ancestry individuals	6,526 European ancestry individuals	4q21.1	SHROOM3	rs17319721-A	0.43	4E-7		0.126	[0.077-0.175] unit increase	Illumina [183585]	N
1175	chr4	77368846	77368847	rs17319721	20383146	Kottgen A	2010-04-11	Nat Genet	New loci associated with kidney function and chronic kidney disease.	Chronic kidney disease	Up to 67,093 European ancestry individuals	Up to 22,982 European ancestry individuals	4q21.1	CCDC158, SHROOM3	rs17319721-A	0.43	1E-19	(eGFRcrea)			Affymetrix, Illumina [~ 2500000] (imputed)	N
1175	chr4	77368846	77368847	rs17319721	19430482	Kottgen A	2009-05-10	Nat Genet	Multiple loci associated with indices of renal function and chronic kidney disease.	Renal function and chronic kidney disease	2,388 European ancestry cases, 17,489 European ancestry controls	1,932 cases, 19,534 controls	4q21.1	SHROOM3	rs17319721-A	0.44	1E-12	(eGFRcrea)	0.01	[0.008-0.016] ml/min/1.73m2 decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1175	chr4	77373078	77373079	rs2870238	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	4q21.1	SHROOM3	rs2870238-T	0.501562	2E-37		0.028253548	[0.024-0.033] unit increase	Affymetrix [93095623] (imputed)	N
1175	chr4	77373078	77373079	rs2870238	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	4q21.1	SHROOM3	rs2870238-T	0.501569	2E-38		0.028596334	[0.024-0.033] unit increase	Affymetrix [93095623] (imputed)	N
1175	chr4	77373078	77373079	rs2870238	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	4q21.1	NR	rs2870238-T	0.499849	1E-40		0.024552	[0.021-0.028] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
1175	chr4	77373078	77373079	rs2870238	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	4q21.1	SHROOM3	rs2870238-T		8E-25		0.022	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
1175	chr4	77373078	77373079	rs2870238	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	4q21.1	SHROOM3	rs2870238-?	NR	9E-9		0.015	[0.01-0.02] unit decrease	Affymetrix [5701386] (imputed)	N
1175	chr4	77373078	77373079	rs2870238	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	4q21.1	SHROOM3	rs2870238-T	0.502	2E-12		0.02483924	[0.018-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
1175	chr4	77373078	77373079	rs2870238	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	4q21.1	SHROOM3	rs2870238-T	0.502	1E-13		0.02625432	[0.019-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
1175	chr4	77391984	77391985	rs56087592	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	4q21.1	NR	rs56087592-T	NR	6E-14		0.0413	[0.031-0.052] unit decrease	Affymetrix [9000000] (imputed)	N
1175	chr4	77391984	77391985	rs56087592	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	4q21.1	NR	rs56087592-T	NR	3E-15		0.0436	[0.033-0.054] unit increase	Affymetrix [9000000] (imputed)	N
1175	chr4	77391984	77391985	rs56087592	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	4q21.1	NR	rs56087592-T	NR	2E-14		0.0421	[0.031-0.053] unit increase	Affymetrix [9000000] (imputed)	N
1175	chr4	77394017	77394018	rs28394165	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	4q21.1		rs28394165-C	NR	2E-189		0.0497	[0.046-0.053] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
1175	chr4	77394017	77394018	rs28394165	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	4q21.1		rs28394165-C	NR	3E-34		0.022	[0.018-0.026] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
1175	chr4	77396853	77396854	rs11722924	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	4q21.1		rs11722924-C	NR	3E-9		0.0113	[0.0076-0.015] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1175	chr4	77396853	77396854	rs11722924	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	4q21.1	SHROOM3	rs11722924-G	0.464692	1E-10		0.0128738	[0.009-0.0168] unit decrease	Affymetrix [NR] (imputed)	N
1175	chr4	77398014	77398015	rs10032549	23535967	Tin A	2013-03-28	J Hum Genet	Using multiple measures for quantitative trait association analyses: application to estimated glomerular filtration rate.	Glomerular filtration rate	9,049 European ancestry individuals		4q21.1	SHROOM3	rs10032549-A	0.47	1E-8	(3-measure model)	0.93	[0.62-1.24] unit increase	Affymetrix [> 2500000] (imputed)	N
1175	chr4	77401451	77401452	rs28817415	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	150,266 East Asian ancestry individuals	NA	4q21.1		rs28817415-T	0.215695	2E-31		0.0403301	[0.034-0.047] unit increase	Illumina [13478778] (imputed)	N
1175	chr4	77401451	77401452	rs28817415	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	153,512 East Asian ancestry individuals	NA	4q21.1		rs28817415-T	0.215624	4E-10		0.0236199	[0.016-0.031] unit increase	Illumina [13479135] (imputed)	N
1175	chr4	77401451	77401452	rs28817415	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	153,015 East Asian ancestry individuals	NA	4q21.1		rs28817415-T	0.215609	9E-10		0.0232355	[0.016-0.031] unit increase	Illumina [13478961] (imputed)	N
1175	chr4	77401451	77401452	rs28817415	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	150,708 East Asian ancestry individuals	NA	4q21.1	NR	rs28817415-C	0.784187	7E-12		0.030257	[0.022-0.039] SD units decrease	Affymetrix, Illumina [16709798] (imputed)	N
1175	chr4	77401451	77401452	rs28817415	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	4q21.1	SHROOM3	rs28817415-T	0.4037	3E-120	(discovery)	0.0073	[0.0067-0.0079] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
1175	chr4	77401451	77401452	rs28817415	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	4q21.1	SHROOM3	rs28817415-T	0.44	1E-103	(discovery)	0.0074	[0.0068-0.0080] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
1175	chr4	77401451	77401452	rs28817415	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	165,726 East Asian ancestry individuals	NA	4q21.1	SHROOM3	rs28817415-T	0.2172	2E-15		0.0064	[0.0048-0.008] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
1175	chr4	77401451	77401452	rs28817415	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Chronic kidney disease	64,164 European and unknown ancestry cases, 561,055 European and unknown ancestry controls	NA	4q21.1	SHROOM3	rs28817415-T	0.40	2E-16		1.069	[1.0522-1.0861]	Affymetrix, Illumina [9585923] (imputed)	N
1175	chr4	77401451	77401452	rs28817415	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	4q21.1	SHROOM3	rs28817415-T	0.3753	3E-22		0.007	[0.0056-0.0084] unit increase	Affymetrix, Illumina [8176554] (imputed)	N
1175	chr4	77408780	77408781	rs6532418	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	4q21.1	NR	rs6532418-A	NR	1E-15		0.0344	[0.026-0.043] unit decrease	Affymetrix [9000000] (imputed)	N
1175	chr4	77409794	77409795	rs7654754	30220432	Haas ME	2018-09-06	Am J Hum Genet	Genetic Association of Albuminuria with Cardiometabolic Disease and Blood Pressure.	Urinary albumin excretion	382,500 European ancestry individuals	NA	4q21.1	SHROOM3	rs7654754-G	0.462	1E-9		0.0102	[0.0069-0.0135] unit increase	Affymetrix [11709857] (imputed)	N
1175	chr4	77410317	77410318	rs4859682	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	4q21.1		rs4859682-A	NR	1E-29		0.0191	[0.016-0.022] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
1175	chr4	77410317	77410318	rs4859682	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q21.1	NR	rs4859682-A	0.393596	9E-52				Affymetrix, Illumina [24332387] (imputed)	N
1175	chr4	77410317	77410318	rs4859682	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	4q21.1	NR	rs4859682-A	0.452866	2E-43		0.025601	[0.022-0.029] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
1175	chr4	77410317	77410318	rs4859682	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q21.1	NR	rs4859682-A	0.394945	5E-44				Affymetrix, Illumina [24653286] (imputed)	N
1175	chr4	77410317	77410318	rs4859682	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q21.1	NR	rs4859682-A	0.39626	1E-53				Affymetrix, Illumina [24558453] (imputed)	N
1175	chr4	77410317	77410318	rs4859682	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	4q21.1	NR	rs4859682-A	0.452667	3E-46		0.026327	[0.023-0.03] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
1175	chr4	77410317	77410318	rs4859682	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	4q21.1	SHROOM3	rs4859682-A	0.4549	1E-13		0.02641173	[0.019-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
1175	chr4	77410317	77410318	rs4859682	23535967	Tin A	2013-03-28	J Hum Genet	Using multiple measures for quantitative trait association analyses: application to estimated glomerular filtration rate.	Glomerular filtration rate	9,049 European ancestry individuals		4q21.1	SHROOM3	rs4859682-A	0.45	2E-9	(6-measure Model)	0.96	[0.65-1.27] unit decrease	Affymetrix [> 2500000] (imputed)	N
1175	chr4	77412043	77412043	rs34533854	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	4q21.1		rs34533854-C	0.46378	4E-8		0.0223401	[0.014-0.03] unit decrease	NR [11722792] (imputed)	N
1175	chr4	77412043	77412043	rs34533854	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	4q21.1		rs34533854-C	0.46378	1E-8		0.0230246	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
1175	chr4	77412139	77412140	rs13146355	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	4q21.1		rs13146355-A	NR	1E-10		0.0135	[0.0094-0.0176] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
1175	chr4	77412139	77412140	rs13146355	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	4q21.1		rs13146355-A	NR	5E-34		0.0211	[0.018-0.024] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
1175	chr4	77412139	77412140	rs13146355	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	4q21.1	SHROOM3	rs13146355-A	0.45448	1E-36		0.0279325	[0.024-0.032] unit increase	Affymetrix [93095623] (imputed)	N
1175	chr4	77412139	77412140	rs13146355	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	142,940 East Asian ancestry individuals	NA	4q21.1	NR	rs13146355-G	0.784314	2E-10		0.02879	[0.02-0.038] SD units decrease	Affymetrix, Illumina [16289021] (imputed)	N
1175	chr4	77412139	77412140	rs13146355	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in non-diabetics	152,624 European ancestry individuals, 36,369 African American individuals	NA	4q21.1	SHROOM3	rs13146355-A	0.414	8E-47		0.76	[0.66-0.86] unit decrease	Affymetrix [NR] (imputed)	N
1175	chr4	77412139	77412140	rs13146355	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in diabetes	70,762 European ancestry individuals, 20,967 African American individuals	NA	4q21.1	SHROOM3	rs13146355-A	0.406	2E-13		0.666	[0.49-0.84] unit decrease	Affymetrix [NR] (imputed)	N
1175	chr4	77412139	77412140	rs13146355	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	4q21.1	SHROOM3	rs13146355-A	0.403	3E-93		0.0073	[0.0067-0.0079] unit decrease	Affymetrix [NR] (imputed)	N
1175	chr4	77412139	77412140	rs13146355	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	4q21.1	SHROOM3, SCARB2, FAM47E-STBD1, CCDC158	rs13146355-G	0.6873	2E-72		17.992	NR z score increase	Illumina [26237160] (imputed)	N
1175	chr4	77412139	77412140	rs13146355	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Creatinine levels	69,591 European ancestry individuals	NA	4q21.1	SHROOM3, AC112249.1	rs13146355-A	0.493037	1E-17		0.051999	[0.041-0.063] unit increase	Illumina [24961484] (imputed)	N
1175	chr4	77412139	77412140	rs13146355	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	4q21.1		rs13146355-?	NR	7E-41				NR [~ 8900000] (imputed)	N
1175	chr4	77412139	77412140	rs13146355	28452372	Gorski M	2017-04-28	Sci Rep	1000 Genomes-based meta-analysis identifies 10 novel loci for kidney function.	Glomerular filtration rate (creatinine)	110,517 European ancestry individuals		4q21.1	SHROOM3	rs13146355-A	NR	3E-37		0.0121	[0.01-0.014] unit decrease	Affymetrix, Illumina [up to 10971307] (imputed)	N
1175	chr4	77412139	77412140	rs13146355	22797727	Okada Y	2012-07-15	Nat Genet	Meta-analysis identifies multiple loci associated with kidney function-related traits in east Asian populations.	Renal function-related traits (sCR)	42,257 East Asian, South Asian, and South East Asian ancestry individuals	19,662 East Asian ancestry individuals	4q21.1	SHROOM3	rs13146355-A	0.21	9E-12		0.0047	[0.0033-0.0061] mg/dl increase	Affymetrix, Illumina [2353587] (imputed)	N
1175	chr4	77412139	77412140	rs13146355	22797727	Okada Y	2012-07-15	Nat Genet	Meta-analysis identifies multiple loci associated with kidney function-related traits in east Asian populations.	Renal function-related traits (eGRFcrea)	42,451 East Asian, South Asian, and South East Asian ancestry individuals	19,636 East Asian ancestry individuals	4q21.1	SHROOM3	rs13146355-A	0.21	7E-11		0.0051	[0.0035-0.0067] ml/min/1.73m2 decrease	Affymetrix, Illumina [2353587] (imputed)	N
1175	chr4	77412139	77412140	rs13146355	20700443	Meyer TE	2010-08-05	PLoS Genet	Genome-wide association studies of serum magnesium, potassium, and sodium concentrations identify six Loci influencing serum magnesium levels.	Magnesium levels	15,366 European ancestry individuals	8,463 European ancestry individuals	4q21.1	SHROOM3	rs13146355-G	0.56	6E-13		0.01	[0.003-0.007] mmol/L decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1175	chr4	77413141	77413142	rs7675217	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	4q21.1		rs7675217-G	0.464392	2E-9		0.0238387	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
1175	chr4	77413141	77413142	rs7675217	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	4q21.1		rs7675217-G	0.464392	3E-8		0.0216769	[0.014-0.029] unit increase	NR [11722792] (imputed)	N
1175	chr4	77413178	77413179	rs7675258	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	4q21.1		rs7675258-?	NR	9E-11				NR [~ 8900000] (imputed)	N
1175	chr4	77414143	77414144	rs10008637	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very small VLDL	115,082 European ancestry individuals	NA	4q21.1		rs10008637-T	0.538057	1E-10		0.0260147	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
1175	chr4	77414143	77414144	rs10008637	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small VLDL	115,082 European ancestry individuals	NA	4q21.1		rs10008637-T	0.538057	4E-8		0.0220094	[0.014-0.03] unit decrease	NR [11722792] (imputed)	N
1175	chr4	77414143	77414144	rs10008637	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in IDL	115,082 European ancestry individuals	NA	4q21.1		rs10008637-T	0.538057	2E-9		0.0243259	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
1175	chr4	77414143	77414144	rs10008637	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	4q21.1		rs10008637-T	0.538057	3E-9		0.0233471	[0.016-0.031] unit increase	NR [11722792] (imputed)	N
1175	chr4	77414143	77414144	rs10008637	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Creatinine levels	110,051 European ancestry individuals	NA	4q21.1		rs10008637-T	0.53784	1E-48		0.0520574	[0.045-0.059] unit decrease	NR [11722792] (imputed)	N
1175	chr4	77414143	77414144	rs10008637	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Citrate levels	115,068 European ancestry individuals	NA	4q21.1		rs10008637-T	0.53804	2E-11		0.0273744	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
1175	chr4	77414143	77414144	rs10008637	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	4q21.1		rs10008637-T	0.538057	2E-9		0.0242934	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
1175	chr4	77414143	77414144	rs10008637	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	4q21.1	SHROOM3	rs10008637-T	0.5503	3E-99	(EA)	0.0074	[0.0066-0.0082] unit increase	Affymetrix [NR] (imputed)	N
1175	chr4	77414143	77414144	rs10008637	27668658	Iotchkova V	2016-11-01	Nat Genet	Discovery and refinement of genetic loci associated with cardiometabolic risk using dense imputation maps.	Cardiometabolic and hematological traits	up to 35,981 European ancestry individuals	up to 102,505 European ancestry individuals	4q21.1	SHROOM3	rs10008637-C		1E-14	(PCV)	0.032	[0.024-0.04] unit increase	Affymetrix, Illumina [17000000] (imputed)	N
1175	chr4	77414987	77414988	rs5020545	27588450	Mahajan A	2016-09-01	Am J Hum Genet	Trans-ethnic Fine Mapping Highlights Kidney-Function Genes Linked to Salt Sensitivity.	Glomerular filtration rate	23,553 European ancestry individuals, 23,536 Japanese individuals, 16,325 Hispanic individuals, 8,224 African American individuals	NA	4q21.1	SHROOM3	rs5020545-T	NR	1E-15		0.969	[0.74-1.2] unit decrease	Affymetrix, Illumina [at least 6581000] (imputed)	N
1175	chr4	77414987	77414988	rs5020545	27588450	Mahajan A	2016-09-01	Am J Hum Genet	Trans-ethnic Fine Mapping Highlights Kidney-Function Genes Linked to Salt Sensitivity.	Glomerular filtration rate	23,553 European ancestry individuals, 23,536 Japanese individuals, 16,325 Hispanic individuals, 8,224 African American individuals	NA	4q21.1	SHROOM3	rs5020545-T	0.43	6E-12	(EA)	1.116	[0.8-1.43] unit decrease	Affymetrix, Illumina [at least 6581000] (imputed)	N
1175	chr4	77414987	77414988	rs5020545	27588450	Mahajan A	2016-09-01	Am J Hum Genet	Trans-ethnic Fine Mapping Highlights Kidney-Function Genes Linked to Salt Sensitivity.	Glomerular filtration rate	23,553 European ancestry individuals, 23,536 Japanese individuals, 16,325 Hispanic individuals, 8,224 African American individuals	NA	4q21.1	SHROOM3	rs5020545-T	0.16	4E-6	(Japanese)	1.803	[1.04-2.57] unit decrease	Affymetrix, Illumina [at least 6581000] (imputed)	N
1175	chr4	77416626	77416627	rs12500824	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cholelithiasis	26,122 European ancestry cases, 461,431 European ancestry controls, 9,305 East Asian ancestry cases, 168,253 East Asian ancestry controls	NA	4q21.1		rs12500824-G	NR	5E-10		0.0525	[0.036-0.069] unit increase	Affymetrix, Illumina [25844936] (imputed)	N
1175	chr4	77416626	77416627	rs12500824	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	4q21.1		rs12500824-G	NR	1E-25		0.0202	[0.016-0.024] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
1175	chr4	77416626	77416627	rs12500824	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	4q21.1	SHROOM3	rs12500824-A	0.353759	3E-21		0.00379655	[0.003-0.0046] unit increase	Affymetrix [13995440] (imputed)	N
1175	chr4	77416626	77416627	rs12500824	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	4q21.1	SHROOM3	rs12500824-A	0.35	2E-12		7.02	z-score increase	Affymetrix [4314223] (imputed)	N
1175	chr4	77416626	77416627	rs12500824	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	4q21.1	SHROOM3	rs12500824-A	0.35	1E-22		9.78	z-score increase	Affymetrix [4312306] (imputed)	N
1175	chr4	77416626	77416627	rs12500824	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Alanine aminotransferase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	4q21.1	SHROOM3	rs12500824-?		1E-14		0.0273	[0.02-0.034] unit decrease	Illumina [31500000] (imputed)	N
1175	chr4	77416626	77416627	rs12500824	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Alanine transaminase levels	134,182 Japanese ancestry individuals	NA	4q21.1	SHROOM3	rs12500824-?	NR	3E-12		0.02649	[0.019-0.034] unit decrease	Illumina [6108953] (imputed)	N
1175	chr4	77416626	77416627	rs12500824	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	4q21.1	SHROOM3	rs12500824-A	0.3565	2E-10		0.0336	[0.023-0.044] unit increase	Affymetrix [at least 7947838] (imputed)	N
1175	chr4	77416626	77416627	rs12500824	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	4q21.1	SHROOM3	rs12500824-A	0.3559	4E-10		0.0359	[0.025-0.047] unit increase	NR [8041861] (imputed)	N
1175	chr4	77416626	77416627	rs12500824	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	4q21.1	SHROOM3	rs12500824-A	0.356	4E-10		0.036	[0.024-0.048] unit increase	Affymetrix [7947838] (imputed)	N
1175	chr4	77417202	77417203	rs2068063	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	4q21.1	SHROOM3	rs2068063-T	0.381334	9E-7		1.04	[1.02-1.05]	NR [8126035] (imputed)	N
1175	chr4	77417202	77417203	rs2068063	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	4q21.1	FLJ25770	rs2068063-?	NR	6E-6	(pyridoxate)	0.1766934	[0.1-0.25] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1175	chr4	77417755	77417756	rs13152154	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	4q21.1	NR	rs13152154-C	0.273035	7E-9		0.00830777	[0.0055-0.0111] unit increase	Affymetrix [16578495] (imputed)	N
1175	chr4	77417941	77417942	rs398092514	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	4q21.1		rs398092514-T	NR	3E-16		0.0173	[0.013-0.021] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
1175	chr4	77418680	77418681	rs13106227	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	4q21.1	SHROOM3	rs13106227-A	0.572	2E-6		0.146	[-0.0108-0.3028] ml/min/1.73m2 decrease	Affymetrix, Illumina [at least 5248638] (imputed)	N
1175	chr4	77418680	77418681	rs13106227	20208534	Rothenberg ME	2010-03-07	Nat Genet	Common variants at 5q22 associate with pediatric eosinophilic esophagitis.	Eosinophilic esophagitis (pediatric)	181 European ancestry cases, 1,974 European ancestry controls	170 European ancestry cases, 1,130 European ancestry controls	4q21.1	NR	rs13106227-?	0.62	4E-6		1.52	[1.20-1.92]	Illumina [~ 550000]	N
1175	chr4	77420405	77420406	rs4624677	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	4q21.1		rs4624677-C	NR	2E-14		0.0151	[0.011-0.019] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
1175	chr4	77420405	77420406	rs4624677	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	150,545 East Asian ancestry individuals	NA	4q21.1		rs4624677-C	0.516931	2E-13		0.0249227	[0.018-0.032] unit decrease	Illumina [13478866] (imputed)	N
1175	chr4	77420598	77420598	rs60117481	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	4q21.1	NR	rs60117481-G	0.354417	7E-11		0.0193574	[0.014-0.025] unit increase	Affymetrix [16580851] (imputed)	N
1175	chr4	77420783	77420784	rs1986734	29227965	Pilling LC	2017-12-01	Aging (Albany NY)	Human longevity: 25 genetic loci associated in 389,166 UK biobank participants.	Parental longevity (combined parental attained age, Martingale residuals)	389,166 British ancestry individuals	NA	4q21.1	SHROOM3	rs1986734-C	0.476	7E-6		0.0101	[0.0058-0.0144] unit increase	Affymetrix [11535925] (imputed)	N
1175	chr4	77420783	77420784	rs1986734	27005778	Kettunen J	2016-03-23	Nat Commun	Genome-wide study for circulating metabolites identifies 62 loci and reveals novel systemic effects of LPA.	Metabolite levels (small molecules and protein measures)	2,118 Erasmus Rucphen (founder/genetic isolate), 22,807 European ancestry individuals	NA	4q21.1	SHROOM3	rs1986734-T	0.56	3E-10	(Creatinine)	0.06	[0.04-0.08] unit increase	Affymetrix, Illumina, Perlegen [12133295] (imputed)	N
1175	chr4	77420783	77420784	rs1986734	20208534	Rothenberg ME	2010-03-07	Nat Genet	Common variants at 5q22 associate with pediatric eosinophilic esophagitis.	Eosinophilic esophagitis (pediatric)	181 European ancestry cases, 1,974 European ancestry controls	170 European ancestry cases, 1,130 European ancestry controls	4q21.1	NR	rs1986734-?	0.49	1E-6		1.54	[1.22-1.89]	Illumina [~ 550000]	N
1175	chr4	77437214	77437215	rs62300881	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	4q21.1	NR	rs62300881-A	NR	2E-19		0.0497	[0.039-0.06] unit decrease	Affymetrix [9000000] (imputed)	N
1175	chr4	77440266	77440267	rs4371638	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	4q21.1	NR	rs4371638-C	NR	4E-22		0.0243	[0.019-0.029] unit increase	Affymetrix [9000000] (imputed)	N
1175	chr4	77440266	77440267	rs4371638	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	4q21.1	NR	rs4371638-C	NR	4E-36		0.0315	[0.027-0.036] unit decrease	Affymetrix [9000000] (imputed)	N
1175	chr4	77440266	77440267	rs4371638	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	4q21.1	NR	rs4371638-C	NR	4E-24		0.0255	[0.021-0.03] unit decrease	Affymetrix [9000000] (imputed)	N
1175	chr4	77440332	77440333	rs11097396	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	4q21.1	NR	rs11097396-G	NR	1E-10		0.0176	[0.012-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
1175	chr4	77440332	77440333	rs11097396	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	4q21.1	NR	rs11097396-G	NR	6E-35		0.0337	[0.028-0.039] unit increase	Affymetrix [9000000] (imputed)	N
1175	chr4	77440332	77440333	rs11097396	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	4q21.1	NR	rs11097396-G	NR	6E-43		0.0376	[0.032-0.043] unit decrease	Affymetrix [9000000] (imputed)	N
1175	chr4	77440332	77440333	rs11097396	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	4q21.1	NR	rs11097396-G	NR	6E-37		0.0347	[0.029-0.04] unit decrease	Affymetrix [9000000] (imputed)	N
1175	chr4	77441013	77441014	rs9996493	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	4q21.1	NR	rs9996493-G	NR	4E-11		0.0192	[0.014-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
1175	chr4	77441013	77441014	rs9996493	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	4q21.1	NR	rs9996493-G	NR	1E-18		0.0257	[0.02-0.031] unit increase	Affymetrix [9000000] (imputed)	N
1175	chr4	77441013	77441014	rs9996493	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	4q21.1	NR	rs9996493-G	NR	2E-11		0.0196	[0.014-0.025] unit increase	Affymetrix [9000000] (imputed)	N
1175	chr4	77462777	77462778	rs11724031	27723756	Wang J	2016-10-10	Nat Genet	Genome-wide association analysis identifies variation in vitamin D receptor and other host factors influencing the gut microbiota.	Gut microbiota (bacterial taxa)	1,812 European ancestry individuals	NA	4q21.1	SHROOM3	rs11724031-G	NR	2E-10	(Unclassified Marinilabiliaceae)	0.97	unit decrease	Affymetrix, Illumina [6344846] (imputed)	N
1175	chr4	77462777	77462778	rs11724031	27723756	Wang J	2016-10-10	Nat Genet	Genome-wide association analysis identifies variation in vitamin D receptor and other host factors influencing the gut microbiota.	Gut microbiota (bacterial taxa)	1,812 European ancestry individuals	NA	4q21.1	SHROOM3	rs11724031-G	NR	2E-10	(Marinilabiliaceae family)	0.97	unit decrease	Affymetrix, Illumina [6344846] (imputed)	N
1176	chr4	77468195	77468196	rs11932470	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	4q21.1	NR	rs11932470-A	NR	8E-6		0.0761	[0.043-0.11] unit increase	Illumina [11133794] (imputed)	N
1176	chr4	77468593	77468594	rs3923380	26853712	Zhang YB	2016-02-08	Nat Commun	Genome-wide association study identifies multiple susceptibility loci for craniofacial microsomia.	Craniofacial microsomia	330 Chinese ancestry left-side-affected cases, 609 Chinese ancestry right-side-affected cases, 2,012 Chinese ancestry controls	151 Chinese ancestry left-side-affected cases, 292 Chinese ancestry right-side-affected cases, 1,669 Chinese ancestry controls	4q21.1	FLJ25770, SHROOM3	rs3923380-A	0.56	8E-8		1.2820514	[1.16-1.41]	Illumina [792342]	N
1176	chr4	77509139	77509140	rs4413433	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	4q21.1		rs4413433-?	NR	1E-12				NR [~ 8900000] (imputed)	N
1176	chr4	77514865	77514866	rs4422437	34242216	Ray D	2021-07-09	PLoS Genet	Pleiotropy method reveals genetic overlap between orofacial clefts at multiple novel loci from GWAS of multi-ethnic trios.	Cleft lip with or without cleft palate or cleft palate (pleiotropy)	300 Asian ancestry cleft lip trios, 299 European ancestry cleft lip trios, 89 Latin American cleft lip trios, 6 cleft lip trios, 875 Asian ancestry cleft lip with cleft palate trios, 679 European ancestry cleft lip with cleft palate trios, 508 Latin American cleft lip with cleft palate trios, 15 cleft lip with cleft palate trios, 273 Asian ancestry cleft palate trios, 296 European ancestry cleft palate trios, 28 Latin American cleft palate trios, 14 cleft palate trios	NA	4q21.1		rs4422437-G	0.33	8E-7				Illumina [6761961] (imputed)	N
1176	chr4	77528820	77528821	rs11723275	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Urolithiasis	6,223 European ancestry cases, 482,123 European ancestry controls, 11,699 East Asian ancestry cases, 167,027 East Asian ancestry controls	NA	4q21.1		rs11723275-C	NR	6E-11		0.084	[0.059-0.109] unit increase	Affymetrix, Illumina [25845211] (imputed)	N
1176	chr4	77528820	77528821	rs11723275	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	4q21.1	NR	rs11723275-C	0.4671	4E-9		0.0269	[0.018-0.036] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1176	chr4	77533938	77533939	rs56281442	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	4q21.1	NR	rs56281442-G	0.3558	1E-8		0.025	[0.016-0.034] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1176	chr4	77549558	77549559	rs6838801	28054174	Leslie EJ	2017-01-04	Hum Genet	Genome-wide meta-analyses of nonsyndromic orofacial clefts identify novel associations between FOXE1 and all orofacial clefts, and TP63 and cleft lip with or without cleft palate.	Cleft lip with or without cleft palate	83 Asian ancestry cases, 1,173 Asian ancestry case-parent trios, 161 Asian ancestry controls,170 European ancestry cases, 988 European ancestry case-parent trios, 835 European ancestry controls, 570 Latino or African cases, 629 Latino or African case-parent trios, 704 Latino or African controls, 21 case-parent trios.	NA	4q21.1	SHROOM3	rs6838801-?	NR	6E-8		1.24	[1.11-1.38] (GENEVA cohort)	Illumina [6090031] (imputed)	N
1176	chr4	77560293	77560294	rs12501918	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	4q21.1		rs12501918-T	0.5	4E-9		5.87	z score increase	Affymetrix [9061022] (imputed)	N
1176	chr4	77568990	77568991	rs143141511	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-10 levels	7,681 Finnish ancestry individuals	NA	4q21.1	NR	rs143141511-G		2E-14	(conditioned on rs55876513)	0.139	SD units increase	NR [10700000] (imputed)	N
1176	chr4	77570353	77570354	rs7686697	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	4q21.1	NR	rs7686697-A	0.2788	6E-10				NR [9056863] (imputed)	N
1176	chr4	77589910	77589911	rs141053179	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interferon gamma-induced protein 10 levels	3,685 Finnish ancestry individuals	NA	4q21.1	CXCL10	rs141053179-G		3E-15		1.1031	[0.83-1.38] SD units increase	NR [10700000] (imputed)	N
1177	chr4	77601826	77601827	rs72661502	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	4q21.1	NR	rs72661502-T	NR	8E-10		0.0204	[0.014-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
1177	chr4	77608664	77608665	rs1013105	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	4q21.1		rs1013105-?	NR	4E-10				NR [~ 8900000] (imputed)	N
1177	chr4	77614639	77614640	rs9993810	26058915	Tin A	2015-05-29	BMC Genet	Genetic loci for serum magnesium among African-Americans and gene-environment interaction at MUC1 and TRPM6 in European-Americans: the Atherosclerosis Risk in Communities (ARIC) study.	Magnesium levels	2,737 African American individuals	942 African American individuals	4q21.1	SHROOM3	rs9993810-A	0.47	6E-6		0.008	[NR] mmol/L decrease	Affymetrix [14825944] (imputed)	N
1177	chr4	77651957	77651958	rs148172770	29124443	Yasukochi Y	2017-11-09	Mol Genet Genomics	Identification of CDC42BPG as a novel susceptibility locus for hyperuricemia in a Japanese population.	Estimated glomerular filtration rate	5,636 Japanese ancestry individuals	NA	4q21.1	SHROOM3	rs148172770-?	2.89799E-4	3E-13				Illumina [~ 244000]	N
1177	chr4	77654811	77654812	rs344137	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	4q21.1		rs344137-G	0.39	5E-12		6.9	z score increase	Affymetrix [9061022] (imputed)	N
1177	chr4	77654811	77654812	rs344137	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	4q21.1	NR	rs344137-G	0.4073	1E-10				NR [9056863] (imputed)	N
1177	chr4	77659089	77659090	rs344139	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	4q21.1		rs344139-T	0.48	9E-14		7.45	z score increase	Affymetrix [9061022] (imputed)	N
1177	chr4	77665278	77665279	rs4859711	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls	NA	4q21.1	SHROOM3	rs4859711-?	NR	3E-6		1.16	[1.09-1.24]	Illumina [at least 5000000] (imputed)	N
1177	chr4	77671438	77671439	rs10028707	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	4q21.1	ANKRD56	rs10028707-?	NR	7E-6	(uric acid)	0.17442533	[0.098-0.251] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1177	chr4	77717082	77717083	rs716525	28394258	Wild PS	2017-04-10	J Clin Invest	Large-scale genome-wide analysis identifies genetic variants associated with cardiac structure and function.	Left ventricle wall thickness	30,201 European ancestry individuals	NA	4q21.1	NR	rs716525-T	0.1346	7E-6		0.0137	[0.0078-0.0196] unit decrease	Affymetrix, Illumina [at least 283291] (imputed)	N
1178	chr4	77763997	77763998	rs10518159	21844884	Wheeler HE	2011-08-16	Pharmacogenomics J	Genome-wide meta-analysis identifies variants associated with platinating agent susceptibility across populations.	Response to platinum-based chemotherapy (cisplatin)	176 Sub-Saharan African ancestry lymphoblastoid cell lines, 83 African ancestry lymphoblastoid cell lines, 175 East Asian ancestry lymphoblastoid cell lines, 174 European ancestry lymphoblastoid cell lines	NA	4q21.1	intergenic	rs10518159-?		1E-6				NR [~ 3000000] (imputed)	N
1178	chr4	77771344	77771345	rs17002253	22379998	McCormack M	2012-03-01	Pharmacogenomics	Genome-wide mapping for clinically relevant predictors of lamotrigine- and phenytoin-induced hypersensitivity reactions.	Adverse response to lamotrigine and phenytoin	34 European ancestry lamotrigine-induced hypersensitivity cases, 42 European ancestry phenytoin-induced hypersensitivity cases, 1,296 European ancestry controls	NA	4q21.1	RP11-123J14.1	rs17002253-?	NR	7E-6	(PHT)			Illumina [NR]	N
1178	chr4	77799848	77799849	rs6828780	34224794	Wang K	2021-07-02	Prog Neuropsychopharmacol Biol Psychiatry	Genome-wide association study identified INSC gene associated with Trail Making Test Part A and Alzheimer's disease related cognitive phenotypes.	Cognitive impairment level	684 European ancestry individuals, 17 Hispanic individuals, 36 African American individuals, 18 individuals	NA	4q21.1		rs6828780-G	NR	9E-6		4.187	[2.35-6.02] unit increase	NR [534934]	N
1178	chr4	77818547	77818548	rs2703129	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	4q21.1		rs2703129-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1178	chr4	77819186	77819187	rs2703128	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	4q21.1		rs2703128-G	NR	8E-11		0.0098	[0.0069-0.0127] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1178	chr4	77833946	77833947	rs2645694	27669027	Boueiz A	2016-09-26	Am J Respir Crit Care Med	Genome-Wide Association Study of the Genetic Determinants of Emphysema Distribution.	Emphysema distribution in smoking	7,039 European ancestry individuals, 2,955 African American individuals, 1538 individuals	NA	4q21.1	SOWAHB	rs2645694-T	0.3	2E-8	(ratio950)	0.08	NR unit increase	Illumina [at least 10657975] (imputed)	N
1179	chr4	77858104	77858105	rs1874564	28703219	Son HY	2017-07-13	Nat Commun	Genome-wide association and expression quantitative trait loci studies identify multiple susceptibility loci for thyroid cancer.	Papillary thyroid cancer	410 Korean ancestry cases, 8,279 Korean ancestry controls	587 Korean ancestry cases, 605 Korean ancestry controls	4q21.1	SEPT11	rs1874564-G	0.69	6E-7		1.31	[NR]	Affymetrix, Illumina [3593389] (imputed)	N
1179	chr4	77858104	77858105	rs1874564	28703219	Son HY	2017-07-13	Nat Commun	Genome-wide association and expression quantitative trait loci studies identify multiple susceptibility loci for thyroid cancer.	Differentiated thyroid cancer	470 Korean ancestry cases, 8,279 Korean ancestry controls	615 Korean ancestry cases, 605 Korean ancestry controls	4q21.1	SEPT11	rs1874564-G	0.69	2E-7		1.31	[NR]	Affymetrix, Illumina [3593389] (imputed)	N
1179	chr4	77862371	77862372	rs2645646	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q21.1	NR	rs2645646-T	0.02265	3E-8	(S100A6)	0.09114	NR unit increase	Illumina [1671387] (imputed)	N
1179	chr4	77862371	77862372	rs2645646	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q21.1	NR	rs2645646-T	0.02265	2E-9	(CORO1A)	0.07777	NR unit increase	Illumina [1671387] (imputed)	N
1179	chr4	77879213	77879214	rs4859470	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	4q21.1	SEPT11	rs4859470-G	0.613324	2E-12		0.016357495	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1179	chr4	77904309	77904310	rs11930058	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	4q21.1		rs11930058-?	NR	1E-19		0.0251604	[0.02-0.031] unit increase	Affymetrix [20259828] (imputed)	N
1179	chr4	77909556	77909557	rs62302300	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	4q21.1	SEPT11	rs62302300-C	0.838792	2E-22		0.0244496	[0.02-0.029] unit increase	NR [13737936] (imputed)	N
1179	chr4	77909556	77909557	rs62302300	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	4q21.1		rs62302300-?	NR	2E-20				NR [~ 8900000] (imputed)	N
1179	chr4	77919795	77919796	rs11097631	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	4q21.1	NR	rs11097631-?	NR	4E-8	(right cerebellum exterior)			NR [9227495] (imputed)	N
1179	chr4	77939723	77939724	rs6532775	30954325	Kamboh MI	2019-03-11	Neurobiol Aging	Population-based genome-wide association study of cognitive decline in older adults free of dementia: identification of a novel locus for the attention domain.	Age-related cognitive decline (language) (slope of z-scores)	1,145 European ancestry individuals	NA	4q21.1	NR	rs6532775-G	0.5	3E-6		0.19	unit increase	Illumina [5600000] (imputed)	N
1179	chr4	77953008	77953009	rs1135642	27106561	Cornelis MC	2016-04-23	Obesity (Silver Spring)	A genome-wide investigation of food addiction.	Food addiction	up to 9,314 European ancestry individuals	NA	4q21.1	SEPT11	rs1135642-A	0.08	9E-6	(mYscore, continuous)	0.13	unit increase	Affymetrix, Illumina [~ 31000000] (imputed)	N
1179	chr4	77953008	77953009	rs1135642	27106561	Cornelis MC	2016-04-23	Obesity (Silver Spring)	A genome-wide investigation of food addiction.	Food addiction	up to 9,314 European ancestry individuals	NA	4q21.1	SEPT11	rs1135642-A	0.08	2E-7	(mYscore, continuous)	1.62		Affymetrix, Illumina [~ 31000000] (imputed)	N
1179	chr4	77955204	77955205	rs17002342	23192594	Velez Edwards DR	2012-11-29	Hum Genet	Gene-environment interactions and obesity traits among postmenopausal African-American and Hispanic women in the Women's Health Initiative SHARe Study.	Waist-to-hip circumference ratio (alcohol intake interaction)	8,203 African American females, 3,484 Hispanic females	NA	4q21.1	SEPT11	rs17002342-T	0.13	9E-6	(AA)	0.61	[0.34-0.88] unit increase	Affymetrix [706791]	N
1181	chr4	78136250	78136251	rs6817538	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Total intracranial volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	4q21.1	NR	rs6817538-?		5E-6				Illumina [4322238] (imputed)	N
1181	chr4	78136932	78136933	rs11937061	22491018	Wang J	2012-04-10	Pharmacogenomics J	Genome-wide association analysis implicates the involvement of eight loci with response to tocilizumab for the treatment of rheumatoid arthritis.	Response to tocilizumab in rheumatoid arthritis	1,157 European and other ancestry rheumatoid arthritis cases	526 European and other ancestry rheumatoid arthritis cases	4q21.1	intergenic	rs11937061-?	0.36	2E-7	(CTJC, RF-)	6.7	[NR] unit decrease	Illumina [534053]	N
1181	chr4	78157287	78157288	rs17002460	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	4q21.1	NR	rs17002460-?	NR	1E-10				Affymetrix [NR]	N
1181	chr4	78224650	78224651	rs186933756	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	4q21.1	NR	rs186933756-?	NR	4E-15	(CXCL10)	3.5019	[2.63-4.38] unit increase	Illumina [11901634] (imputed)	N
1182	chr4	78341659	78341660	rs7677281	24023788	Ong BA	2013-09-02	PLoS One	Gene network analysis in a pediatric cohort identifies novel lung function genes.	Lung function (FEV1/FVC)	1,015 European ancestry individuals, 541 African American individuals	NA	4q21.1	NR	rs7677281-?		6E-6	(AA)			Illumina [up to 524000]	N
1182	chr4	78345533	78345534	rs28457623	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q21.1	NR	rs28457623-T	0.01568	1E-9	(LTF)	0.318	NR unit increase	Illumina [1671387] (imputed)	N
1182	chr4	78346376	78346377	rs7669806	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	4q21.1	NR	rs7669806-?	NR	7E-6	(AA)	0.4845	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1183	chr4	78393955	78393956	rs115587484	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	4q21.1	NR	rs115587484-?	NR	1E-17	(CXCL10)	1.46637	[1.13-1.8] unit increase	Illumina [11901634] (imputed)	N
1183	chr4	78440424	78440425	rs7685785	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	4q21.1	CXCL13	rs7685785-C	0.89	5E-10		1.09	[1.07-1.1]	Illumina [at least 560000] (imputed)	N
1183	chr4	78440424	78440425	rs7685785	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	4q21.1	CXCL13	rs7685785-?	NR	5E-10		1.0881393	[1.06-1.12]	Illumina [13757430] (imputed)	N
1183	chr4	78480209	78480210	rs2119976	34241534	Lu Y	2021-07-09	Circ Genom Precis Med	Multiethnic Genome-wide Association Study of Subclinical Atherosclerosis in Individuals with Type 2 Diabetes.	Carotid artery intima-media thickness in type 2 diabetes	3,608 European ancestry individuals	NA	4q21.1		rs2119976-A	0.06	5E-7		0.06	[0.04-0.08] unit increase	Affymetrix, Illumina [19600000] (imputed)	N
1183	chr4	78503055	78503056	rs191403645	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	4q21.1	CXCL13	rs191403645-A	0.0071	2E-6		0.2328	[0.14-0.33] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1183	chr4	78508196	78508197	rs117605225	33310728	Ha E	2020-12-11	Ann Rheum Dis	Large-scale meta-analysis across East Asian and European populations updated genetic architecture and variant-driven biology of rheumatoid arthritis, identifying 11 novel susceptibility loci.	Rheumatoid arthritis	14,361 European ancestry cases, 43,923 European ancestry controls, 8,267 East Asian ancestry cases, 244,741 East Asian ancestry controls	NA	4q21.1		rs117605225-T	NR	2E-9		1.54	[1.34-1.77]	NR [13810676] (imputed)	N
1183	chr4	78508196	78508197	rs117605225	32723749	Kwon YC	2020-07-28	Ann Rheum Dis	Genome-wide association study in a Korean population identifies six novel susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis	4,068 Korean ancestry cases, 36,487 Korean ancestry controls	NA	4q21.1	CXCL13	rs117605225-?		2E-9		0.65	[0.56-0.75]	Illumina [NR] (imputed)	N
1184	chr4	78537544	78537545	rs12647197	30694715	Sakornsakolpat P	2019-01-29	Am J Respir Cell Mol Biol	Genome-Wide Association Analysis of Single Breath Diffusing Capacity of Carbon Monoxide (DLCO).	Diffusing capacity of carbon monoxide	2,584 European ancestry individuals with chronic obstructive pulmonary disease, 3,002 European ancestry healthy individuals, 343 African American individuals with chronic obstructive pulmonary disease, 1,006 African American healthy individuals	NA	4q21.1	CXCL13	rs12647197-G	0.37	6E-6	(African American)	0.2	0.11-0.29 unit increase	Illumina [NR] (imputed)	N
1184	chr4	78582740	78582741	rs113147266	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	4q21.1	NR	rs113147266-?	NR	2E-8				Illumina [7760689] (imputed)	N
1184	chr4	78605368	78605369	rs958617	24057671	Chimusa ER	2013-09-18	Hum Mol Genet	Genome-wide association study of ancestry-specific TB risk in the South African Coloured population.	Tuberculosis	642 South African coloured cases, 91 South African coloured controls	NA	4q21.1	CNOT6L	rs958617-G	0.7	3E-7		6.6667	[NR]	Affymetrix [up to 4467279] (imputed)	N
1185	chr4	78654634	78654635	rs74974099	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	4q21.1	NR	rs74974099-?	NR	3E-16	(CXCL10)	1.89296	[1.44-2.35] unit increase	Illumina [11901634] (imputed)	N
1185	chr4	78715263	78715264	rs6816134	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	4q21.1	NR	rs6816134-?	NR	1E-8	(right ventral DC)			NR [9227495] (imputed)	N
1185	chr4	78715431	78715432	rs34830788	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	4q21.1	NR	rs34830788-?	NR	5E-9	(right ventral DC)			NR [9227495] (imputed)	N
1185	chr4	78715431	78715432	rs34830788	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	4q21.1	NR	rs34830788-?	NR	2E-10	(left ventral DC)			NR [9227495] (imputed)	N
1185	chr4	78728696	78728697	rs9654194	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	4q21.1	NR	rs9654194-?	NR	8E-11	(left ventral DC)			NR [9227495] (imputed)	N
1186	chr4	78799833	78799834	rs142688505	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	4q21.1	NR	rs142688505-?	NR	3E-16	(CXCL10)	1.89054	[1.44-2.34] unit increase	Illumina [11901634] (imputed)	N
1186	chr4	78843914	78843915	rs35648590	29855537	Hirata T	2018-05-31	Sci Rep	Japanese GWAS identifies variants for bust-size, dysmenorrhea, and menstrual fever that are eQTLs for relevant protein-coding or long non-coding RNAs.	Menstruation quality of life impact (headache)	1,758 Japanese ancestry female cases, 3,976 Japanese ancestry female controls	1,763 Japanese ancestry female cases, 3,851 Japanese ancestry female controls	4q21.1	NR	rs35648590-C	0.642119745	2E-7		0.15414548	[0.096-0.212] unit decrease	Affymetrix [536506]	N
1186	chr4	78896547	78896548	rs114622739	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	4q21.1	NR	rs114622739-?	NR	2E-7	(Latino)	1.3251	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1187	chr4	78932837	78932838	rs6811802	28468790	Agopian AJ	2017-06-01	Circ Cardiovasc Genet	Genome-Wide Association Studies and Meta-Analyses for Congenital Heart Defects.	Left ventricular obstructive tract defect (inherited effect)	247 European ancestry trios, 70 non-European ancestry trios, 192 European and other ancestry trios	NA	4q21.21	intergenic	rs6811802-?	NR	5E-6		2.009446	[1.490896-2.708352]	Illumina [at least 4483243] (imputed)	N
1187	chr4	78936073	78936074	rs2102191	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	4q21.21	NR	rs2102191-?	NR	2E-8	(left ventral DC)			NR [9227495] (imputed)	N
1187	chr4	78946912	78946913	rs4368632	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28+ CD45RA- CD8+ T cell %CD8+ T cell	3,440 Sardinian (founder/genetic isolate) ancestry individuals	NA	4q21.21		rs4368632-C	0.62293	3E-8		0.1446	[0.094-0.195] unit increase	Illumina [18357815] (imputed)	N
1187	chr4	78961033	78961034	rs147885583	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	4q21.21	NR	rs147885583-?	NR	5E-15	(CXCL10)	1.71319	[1.28-2.14] unit increase	Illumina [11901634] (imputed)	N
1187	chr4	78994887	78994888	rs145703626	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	4q21.21	FRAS1	rs145703626-G	NR	6E-6	(men)	0.183664	[0.1-0.26] unit decrease	Illumina [13520550] (imputed)	N
1187	chr4	79009308	79009309	rs150303591	27047539	Fridley BL	2016-03-22	Front Genet	Genome-Wide Study of Response to Platinum, Taxane, and Combination Therapy in Ovarian Cancer: In vitro Phenotypes, Inherited Variation, and Disease Recurrence.	Response to carboplatin in ovarian cancer (MTT IC50)	74 lymphoblastoid cell lines	NA	4q21.21	FRAS1	rs150303591-?	NR	6E-7				Illumina [6243550] (imputed)	N
1188	chr4	79043029	79043030	rs150248708	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		FRAS1	rs150248708-?	NR	3E-9	(male)	1.66623	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1188	chr4	79043116	79043117	rs6842385	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	4q21.21	FRAS1, HMGB1P44, MRPL1	rs6842385-A	NR	3E-6	(sleep latency, weekdays)	0.8919	[0.52-1.26] unit increase	Affymetrix [7141204] (imputed)	N
1188	chr4	79057825	79057826	rs79385086	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		FRAS1	rs79385086-?	NR	3E-8		1.14471	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1188	chr4	79079756	79079757	rs17002988	23703922	Li WD	2013-01-02	Obesity (Silver Spring)	A genome wide association study of plasma uric acid levels in obese cases and never-overweight controls.	Uric acid levels	487 European ancestry obese individuals, 472 non-obese individuals	NA	4q21.21	FRAS1	rs17002988-?	NR	6E-6	(Obese)			Illumina [~ 550000]	N
1188	chr4	79106409	79106410	rs150851617	29213071	Mendez-Giraldez R	2017-12-06	Sci Rep	GWAS of the electrocardiographic QT interval in Hispanics/Latinos generalizes previously identified loci and identifies population-specific signals.	QT interval	15,997 Hispanic/Latino individuals	NA	4q21.21	FRAS1	rs150851617-T	0.99	2E-6		14.58	[8.52-20.64] ms increase	Affymetrix, Illumina [up to 17586686] (imputed)	N
1189	chr4	79261322	79261323	rs429977	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	4q21.21	ANXA3	rs429977-?	NR	4E-6	(asparagine)	0.24620596	[0.14-0.35] unit increase	Affymetrix [at least 2500000] (imputed)	N
1189	chr4	79279800	79279801	rs440095	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	4q21.21		rs440095-?	NR	2E-57				NR [~ 8900000] (imputed)	N
1189	chr4	79280692	79280693	rs1268789	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	4q21.21	FRAS1	rs1268789-?	NR	2E-21		1.0828371	NR	Affymetrix [9154080] (imputed)	N
1189	chr4	79280692	79280693	rs1268789	29220522	Liu F	2017-12-06	Hum Mol Genet	Meta-analysis of genome-wide association studies identifies 8 novel loci involved in shape variation of human head hair.	Hair shape	16,763 European ancestry individuals	2,340 European ancestry individuals, 2,899 Han Chinese ancestry individuals, 709 Uyghur ancestry individuals, 6,238 Latin American individuals, 15 South American, South Asian or Middle Eastern individuals	4q21.21	FRAS1	rs1268789-T	0.330182577	1E-12		0.038486708	[0.028-0.049] unit increase	Illumina [up to 9350000] (imputed)	N
1189	chr4	79280692	79280693	rs1268789	19896111	Medland SE	2009-11-04	Am J Hum Genet	Common variants in the trichohyalin gene are associated with straight hair in Europeans.	Hair morphology	4,845 European ancestry individuals from 2,892 families, 16,140 European ancestry individuals	NA	4q21.21	FRAS1	rs1268789-T	NR	7E-8				Illumina [~ 1000000] (imputed)	N
1190	chr4	79300405	79300406	rs72657077	31816047	Boutin TS	2019-12-09	Hum Mol Genet	Insights into the genetic basis of retinal detachment.	Retinal detachment or retinal break	3,977 British ancestry cases, 360,233 British ancestry controls	NA	4q21.21	FRAS1	rs72657077-?	0.020000000000000018	4E-6		1.3778296	[1.17-1.62]	Affymetrix, Illumina [7701827] (imputed)	N
1190	chr4	79317683	79317684	rs545583326	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	4q21.21	NR	rs545583326-?	NR	9E-6		1.06619	[0.59-1.54] unit increase	NR [13958389] (imputed)	N
1190	chr4	79344553	79344554	rs186222325	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	4q21.21	FRAS1	rs186222325-T	0.032868	7E-10		0.040034954	[0.027-0.053] unit increase	Affymetrix [93095623] (imputed)	N
1190	chr4	79344553	79344554	rs186222325	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	4q21.21	NR	rs186222325-?	NR	1E-12	(CXCL10)	1.36815	[0.99-1.74] unit increase	Illumina [11901634] (imputed)	N
1190	chr4	79401433	79401434	rs12509281	28468790	Agopian AJ	2017-06-01	Circ Cardiovasc Genet	Genome-Wide Association Studies and Meta-Analyses for Congenital Heart Defects.	Left ventricular obstructive tract defect (maternal effect)	up to 439 European ancestry trios	NA	4q21.21	FRAS1	rs12509281-?	NR	2E-6		2.2064974	[1.59-3.06]	Illumina [at least 4756722] (imputed)	N
1190	chr4	79403951	79403952	rs11098196	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	4q21.21	FRAS1	rs11098196-T	0.5083	2E-16		0.0196	[0.015-0.024] unit decrease	Affymetrix [19819130] (imputed)	N
1190	chr4	79408603	79408604	rs4975128	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	4q21.21		rs4975128-?	NR	2E-16				NR [~ 8900000] (imputed)	N
1191	chr4	79502971	79502972	rs10028001	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	4q21.21	ANXA3	rs10028001-A	0.55	7E-6	(East Asian)	0.11386	[0.064-0.164] unit decrease	Illumina [8380626] (imputed)	N
1191	chr4	79506863	79506864	rs7679218	24529757	Xie T	2014-01-17	Neurobiol Aging	Genome-wide association study combining pathway analysis for typical sporadic amyotrophic lateral sclerosis in Chinese Han populations.	Amyotrophic lateral sclerosis (sporadic)	250 Han Chinese ancestry cases, 250 Han Chinese ancestry controls	NA	4q21.21	ANXA3	rs7679218-?		5E-6				Illumina [859311]	N
1191	chr4	79513214	79513215	rs2867461	22446963	Okada Y	2012-03-25	Nat Genet	Meta-analysis identifies nine new loci associated with rheumatoid arthritis in the Japanese population.	Rheumatoid arthritis	4,074 Japanese ancestry cases, 16,891 Japanese ancestry controls	5,277 Japanese ancestry cases, 21,684 Japanese ancestry controls	4q21.21	ANXA3	rs2867461-A	0.44	1E-12		1.13	[1.09-1.17]	Affymetrix, Illumina [1948139]	N
1191	chr4	79528542	79528543	rs11335718	29559693	Zengini E	2018-03-20	Nat Genet	Genome-wide analyses using UK Biobank data provide insights into the genetic architecture of osteoarthritis.	Osteoarthritis (self-reported)	12,658 European ancestry cases, 50,898 European ancestry controls		4q21.21	NR	rs11335718-A	0.105579	5E-6		1.11954	[1.07172-1.16949]	Affymetrix [16499239] (imputed)	N
1191	chr4	79536645	79536646	rs11098275	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	4q21.21	ANXA3	rs11098275-T	0.378955	3E-19		0.00463396	[0.0036-0.0057] unit increase	Affymetrix [13995440] (imputed)	N
1191	chr4	79538232	79538233	rs78471838	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	4q21.21		rs78471838-A	0.0371590000000001	4E-10		0.03668452	[0.025-0.048] unit increase	Affymetrix [93095623] (imputed)	N
1191	chr4	79541205	79541206	rs6842686	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	4q21.21		rs6842686-G	0.622964	3E-10		0.014478213	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
1191	chr4	79550424	79550425	rs9998136	33568662	Dashti HS	2021-02-10	Nat Commun	Genetic determinants of daytime napping and effects on cardiometabolic health.	Daytime nap	452,633 European ancestry individuals	541,333 European ancestry individuals	4q21.21	ANXA3, BMP2K	rs9998136-G		1E-16		0.0082	[0.0062-0.0102] unit increase	Affymetrix [13304133] (imputed)	N
1191	chr4	79559555	79559556	rs78693599	29559693	Zengini E	2018-03-20	Nat Genet	Genome-wide analyses using UK Biobank data provide insights into the genetic architecture of osteoarthritis.	Osteoarthritis (self-reported)	12,658 European ancestry cases, 50,898 European ancestry controls		4q21.21	NR	rs78693599-C	0.0255466	7E-6		1.22461	[1.1275-1.33008]	Affymetrix [16499239] (imputed)	N
1192	chr4	79561503	79561503	rs75818130	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	4q21.21	snoU13	rs75818130-ATTG	0.748421	2E-14		0.019962123	[0.015-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1192	chr4	79561503	79561503	rs75818130	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	4q21.21	NR	rs75818130-I	0.748219	3E-19		0.020503	[0.016-0.025] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1192	chr4	79565003	79565004	rs4975148	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	4q21.21	LINC01094	rs4975148-T	0.250302	7E-14		0.01921946	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1192	chr4	79565818	79565819	rs7697461	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q21.21	NR	rs7697461-T	0.739675	3E-18				Affymetrix, Illumina [17210439] (imputed)	N
1192	chr4	79578148	79578149	rs7670506	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q21.21	NR	rs7670506-A	0.218279	2E-17				Affymetrix, Illumina [23467995] (imputed)	N
1192	chr4	79578148	79578149	rs7670506	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	4q21.21	NR	rs7670506-A	0.248808	1E-17		0.018548	[0.014-0.023] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1192	chr4	79578250	79578251	rs118190473	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	4q21.21		rs118190473-C	NR	6E-24		0.0499	[0.04-0.06] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
1192	chr4	79578250	79578251	rs118190473	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	133,321 East Asian ancestry individuals	NA	4q21.21		rs118190473-C	0.199012	6E-24		0.0498883	[0.04-0.06] unit decrease	Illumina [13477433] (imputed)	N
1192	chr4	79578250	79578251	rs118190473	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	4q21.21		rs118190473-C	NR	1E-26		0.0529	[0.043-0.063] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
1192	chr4	79578250	79578251	rs118190473	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	120,539 East Asian ancestry individuals	NA	4q21.21		rs118190473-C	0.199194	1E-26		0.0529402	[0.043-0.063] unit increase	Illumina [13474682] (imputed)	N
1192	chr4	79578250	79578251	rs118190473	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	4q21.21		rs118190473-C	NR	2E-14		0.0351	[0.026-0.044] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
1192	chr4	79578250	79578251	rs118190473	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	150,068 East Asian ancestry individuals	NA	4q21.21		rs118190473-C	0.199013	2E-14		0.0351399	[0.026-0.044] unit decrease	Illumina [13478956] (imputed)	N
1192	chr4	79579530	79579532	rs562402552	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	4q21.21		rs562402552-C	NR	3E-13		0.0167	[0.012-0.021] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
1192	chr4	79589044	79589045	rs10007186	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Creatine kinase levels	106,080 Japanese ancestry individuals	NA	4q21.21	LINC01094	rs10007186-?	NR	5E-13		0.03203	[0.023-0.041] unit increase novel	Illumina [6108953] (imputed)	N
1192	chr4	79589044	79589045	rs10007186	22558069	Osman W	2012-04-27	PLoS One	Association of common variants in TNFRSF13B, TNFSF13, and ANXA3 with serum levels of non-albumin protein and immunoglobulin isotypes in Japanese.	Non-albumin protein levels	Up to 9,103 Japanese ancestry individuals	Up to 1,629 Japanese ancestry individuals	4q21.21	ANXA3	rs10007186-C	0.307	1E-9	(NAP)	0.085	[0.058-0.112] unit increase	Illumina [2178644] (imputed)	N
1192	chr4	79600143	79600147	rs1454851355	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q21.21	NR	rs1454851355-G	0.01045	2E-8	(A2M)	1.454	NR unit increase	Illumina [1671387] (imputed)	N
1192	chr4	79611843	79611844	rs4560439	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	4q21.21		rs4560439-C	0.618613	4E-12		0.0151633	[0.011-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
1192	chr4	79611843	79611844	rs4560439	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	4q21.21	NR	rs4560439-C	0.618802	9E-20		0.018096	[0.014-0.022] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
1192	chr4	79619198	79619199	rs75759936	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum total protein level	113,509 Japanese ancestry individuals	NA	4q21.21	LINC01094, BMP2K	rs75759936-?	NR	8E-13		0.04557	[0.033-0.058] unit decrease novel	Illumina [6108953] (imputed)	N
1192	chr4	79619198	79619199	rs75759936	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum albumin levels	102,223 Japanese ancestry individuals	NA	4q21.21	LINC01094, BMP2K	rs75759936-?	NR	2E-17		0.05679	[0.044-0.07] unit increase	Illumina [6108953] (imputed)	N
1192	chr4	79619198	79619199	rs75759936	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Non-albumin protein levels	98,538 Japanese ancestry individuals	NA	4q21.21	LINC01094, BMP2K	rs75759936-?	NR	8E-47		0.09789	[0.085-0.111] unit decrease novel	Illumina [6108953] (imputed)	N
1192	chr4	79619198	79619199	rs75759936	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Aspartate aminotransferase levels	134,154 Japanese ancestry individuals	NA	4q21.21	LINC01094, BMP2K	rs75759936-?	NR	2E-8		0.03204	[0.021-0.043] unit decrease novel	Illumina [6108953] (imputed)	N
1192	chr4	79619198	79619199	rs75759936	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Albumin-globulin ratio	98,626 Japanese ancestry individuals	NA	4q21.21	LINC01094, BMP2K	rs75759936-?	NR	5E-59		0.1103	[0.097-0.124] unit increase novel	Illumina [6108953] (imputed)	N
1192	chr4	79622672	79622673	rs80057746	29559693	Zengini E	2018-03-20	Nat Genet	Genome-wide analyses using UK Biobank data provide insights into the genetic architecture of osteoarthritis.	Osteoarthritis (self-reported)	12,658 European ancestry cases, 50,898 European ancestry controls		4q21.21	NR	rs80057746-T	0.0243844	1E-7		1.21576	[1.11707-1.32316]	Affymetrix [16499239] (imputed)	N
1192	chr4	79624740	79624741	rs11728572	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	4q21.21	NR	rs11728572-T	0.04627	3E-14		0.033707	[0.025-0.042] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
1192	chr4	79627476	79627477	rs7699519	29206233	Shendre A	2017-12-04	PLoS One	Genome-wide admixture and association study of subclinical atherosclerosis in the Women's Interagency HIV Study (WIHS).	Common carotid intima-media thickness in HIV infection	682 Black non-Hispanic HIV-positive women	NA	4q21.21	LINC01094, BMP2K	rs7699519-T	NR	4E-6		0.01657	[NR] unit increase	Illumina [1124301]	N
1192	chr4	79629862	79629863	rs10023310	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q21.21	NR	rs10023310-C	0.602029	6E-10				Affymetrix, Illumina [21126107] (imputed)	N
1192	chr4	79632574	79632575	rs1469290	29206233	Shendre A	2017-12-04	PLoS One	Genome-wide admixture and association study of subclinical atherosclerosis in the Women's Interagency HIV Study (WIHS).	Common carotid intima-media thickness in HIV infection	682 Black non-Hispanic HIV-positive women	NA	4q21.21	LINC01094, BMP2K	rs1469290-G	NR	2E-6		0.0187	[NR] unit increase	Illumina [1124301]	N
1192	chr4	79634502	79634503	rs2903578	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	4q21.21		rs2903578-?	NR	1E-20				NR [~ 8900000] (imputed)	N
1192	chr4	79637364	79637365	rs11931263	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	4q21.21		rs11931263-A	NR	1E-10		0.0118	[0.0083-0.0153] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
1192	chr4	79637445	79637446	rs11931300	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	4q21.21		rs11931300-A	0.625336	1E-13		0.0289024	[0.021-0.037] unit decrease	Illumina [13476299] (imputed)	N
1192	chr4	79639614	79639615	rs113172748	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	4q21.21	NR	rs113172748-G	0.669706	4E-10		0.014697257	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
1192	chr4	79639614	79639615	rs113172748	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	4q21.21		rs113172748-G	0.669671	1E-15		0.019006964	[0.014-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1192	chr4	79639614	79639615	rs113172748	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	4q21.21	NR	rs113172748-G	0.67134	1E-12		0.013916	[0.01-0.018] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
1192	chr4	79640161	79640162	rs11943548	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	4q21.21	NR	rs11943548-T	0.623527	7E-18		0.018282	[0.014-0.022] SD unit increase	Affymetrix, Illumina [50036608] (imputed)	N
1192	chr4	79640857	79640858	rs143407796	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q21.21	NR	rs143407796-C	0.209788	1E-11				Affymetrix, Illumina [24649327] (imputed)	N
1192	chr4	79641076	79641077	rs28453237	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q21.21	NR	rs28453237-A	0.623052	1E-17				Affymetrix, Illumina [19905671] (imputed)	N
1192	chr4	79642416	79642417	rs17003427	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q21.21	NR	rs17003427-T	0.0951172	8E-14				Affymetrix, Illumina [24653286] (imputed)	N
1192	chr4	79642416	79642417	rs17003427	29738550	de Oliveira Otto MC	2018-05-08	PLoS One	Genome-wide association meta-analysis of circulating odd-numbered chain saturated fatty acids: Results from the CHARGE Consortium.	Circulating odd-numbered chain saturated fatty acid levels (C23:0)	7,582 European ancestry individuals	NA	4q21.21	NR	rs17003427-?	NR	1E-7		0.0147	[0.0092-0.0202] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1192	chr4	79644278	79644279	rs6533951	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	4q21.21	LINC01094	rs6533951-A	0.35	1E-10		1.111	[1.08-1.14]	Illumina [11270530] (imputed)	N
1192	chr4	79646161	79646162	rs114841229	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	4q21.21		rs114841229-T	NR	4E-8		0.0321	[0.021-0.043] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
1192	chr4	79646370	79646371	rs11724233	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	4q21.21		rs11724233-G	NR	3E-18		0.0178	[0.014-0.022] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
1192	chr4	79646370	79646371	rs11724233	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	4q21.21		rs11724233-G	NR	1E-26		0.0218	[0.018-0.026] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
1192	chr4	79646370	79646371	rs11724233	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	119,629 East Asian ancestry individuals	NA	4q21.21	NR	rs11724233-T	0.33944	2E-10		0.027668	[0.019-0.036] SD units increase	Affymetrix, Illumina [16286228] (imputed)	N
1192	chr4	79651859	79651860	rs10518201	29738550	de Oliveira Otto MC	2018-05-08	PLoS One	Genome-wide association meta-analysis of circulating odd-numbered chain saturated fatty acids: Results from the CHARGE Consortium.	Circulating odd-numbered chain saturated fatty acid levels (C23:0)	7,582 European ancestry individuals	NA	4q21.21	NR	rs10518201-?	NR	4E-7		0.0141	[0.0086-0.0196] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1192	chr4	79655285	79655286	rs12648219	29738550	de Oliveira Otto MC	2018-05-08	PLoS One	Genome-wide association meta-analysis of circulating odd-numbered chain saturated fatty acids: Results from the CHARGE Consortium.	Circulating odd-numbered chain saturated fatty acid levels (C23:0)	7,582 European ancestry individuals	NA	4q21.21	NR	rs12648219-?	NR	3E-7		0.0143	[0.0088-0.0198] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1192	chr4	79657359	79657360	rs6857679	29738550	de Oliveira Otto MC	2018-05-08	PLoS One	Genome-wide association meta-analysis of circulating odd-numbered chain saturated fatty acids: Results from the CHARGE Consortium.	Circulating odd-numbered chain saturated fatty acid levels (C23:0)	7,582 European ancestry individuals	NA	4q21.21	NR	rs6857679-?	NR	3E-7		0.0143	[0.0088-0.0198] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1192	chr4	79657371	79657372	rs6839280	29738550	de Oliveira Otto MC	2018-05-08	PLoS One	Genome-wide association meta-analysis of circulating odd-numbered chain saturated fatty acids: Results from the CHARGE Consortium.	Circulating odd-numbered chain saturated fatty acid levels (C23:0)	7,582 European ancestry individuals	NA	4q21.21	NR	rs6839280-?	NR	3E-7		0.0143	[0.0088-0.0198] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1192	chr4	79659172	79659173	rs7439893	29738550	de Oliveira Otto MC	2018-05-08	PLoS One	Genome-wide association meta-analysis of circulating odd-numbered chain saturated fatty acids: Results from the CHARGE Consortium.	Circulating odd-numbered chain saturated fatty acid levels (C23:0)	7,582 European ancestry individuals	NA	4q21.21	NR	rs7439893-?	NR	3E-7		0.0143	[0.0088-0.0198] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1192	chr4	79659217	79659218	rs7439923	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count (basophil)	171,846 European ancestry individuals	NA	4q21.21	intergenic	rs7439923-G	0.397	7E-12		0.0246071	[0.018-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1192	chr4	79659217	79659218	rs7439923	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of white cells	171,996 European ancestry individuals	NA	4q21.21	intergenic	rs7439923-G	0.397	6E-9		0.0206862	[0.014-0.028] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1192	chr4	79659664	79659665	rs727761	29738550	de Oliveira Otto MC	2018-05-08	PLoS One	Genome-wide association meta-analysis of circulating odd-numbered chain saturated fatty acids: Results from the CHARGE Consortium.	Circulating odd-numbered chain saturated fatty acid levels (C23:0)	7,582 European ancestry individuals	NA	4q21.21	NR	rs727761-?	NR	3E-7		0.0142	[0.0087-0.0197] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1192	chr4	79659763	79659764	rs727760	29738550	de Oliveira Otto MC	2018-05-08	PLoS One	Genome-wide association meta-analysis of circulating odd-numbered chain saturated fatty acids: Results from the CHARGE Consortium.	Circulating odd-numbered chain saturated fatty acid levels (C23:0)	7,582 European ancestry individuals	NA	4q21.21	NR	rs727760-?	NR	4E-7		0.0141	[0.0086-0.0196] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1192	chr4	79661617	79661618	rs9992277	29738550	de Oliveira Otto MC	2018-05-08	PLoS One	Genome-wide association meta-analysis of circulating odd-numbered chain saturated fatty acids: Results from the CHARGE Consortium.	Circulating odd-numbered chain saturated fatty acid levels (C23:0)	7,582 European ancestry individuals	NA	4q21.21	NR	rs9992277-?	NR	3E-7		0.0141	[0.0086-0.0196] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1192	chr4	79664012	79664013	rs1978552	29738550	de Oliveira Otto MC	2018-05-08	PLoS One	Genome-wide association meta-analysis of circulating odd-numbered chain saturated fatty acids: Results from the CHARGE Consortium.	Circulating odd-numbered chain saturated fatty acid levels (C23:0)	7,582 European ancestry individuals	NA	4q21.21	NR	rs1978552-?	NR	4E-7		0.0141	[0.0086-0.0196] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1192	chr4	79670526	79670527	rs17003443	29738550	de Oliveira Otto MC	2018-05-08	PLoS One	Genome-wide association meta-analysis of circulating odd-numbered chain saturated fatty acids: Results from the CHARGE Consortium.	Circulating odd-numbered chain saturated fatty acid levels (C23:0)	7,582 European ancestry individuals	NA	4q21.21	NR	rs17003443-?	NR	5E-7		0.0141	[0.0086-0.0196] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1192	chr4	79672538	79672539	rs4432766	29738550	de Oliveira Otto MC	2018-05-08	PLoS One	Genome-wide association meta-analysis of circulating odd-numbered chain saturated fatty acids: Results from the CHARGE Consortium.	Circulating odd-numbered chain saturated fatty acid levels (C23:0)	7,582 European ancestry individuals	NA	4q21.21	NR	rs4432766-?	NR	6E-7		0.0141	[0.0086-0.0196] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1192	chr4	79677561	79677562	rs62310760	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	4q21.21		rs62310760-T	0.265	3E-10		0.0258042	[0.018-0.034] unit increase	Illumina [13476266] (imputed)	N
1192	chr4	79679676	79679677	rs10518202	29738550	de Oliveira Otto MC	2018-05-08	PLoS One	Genome-wide association meta-analysis of circulating odd-numbered chain saturated fatty acids: Results from the CHARGE Consortium.	Circulating odd-numbered chain saturated fatty acid levels (C23:0)	7,582 European ancestry individuals	NA	4q21.21	NR	rs10518202-?	NR	7E-7		0.0141	[0.0086-0.0196] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1193	chr4	79697869	79697870	rs149914551	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	4q21.21	BMP2K	rs149914551-A	0.035059	3E-9		0.036369134	[0.024-0.048] unit increase	Affymetrix [93095623] (imputed)	N
1193	chr4	79697869	79697870	rs149914551	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	4q21.21	BMP2K	rs149914551-A	0.035058	2E-12		0.043096147	[0.031-0.055] unit increase	Affymetrix [93095623] (imputed)	N
1193	chr4	79697869	79697870	rs149914551	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	4q21.21	BMP2K	rs149914551-A	0.035081	7E-13		0.043684714	[0.032-0.056] unit decrease	Affymetrix [93095623] (imputed)	N
1193	chr4	79697869	79697870	rs149914551	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	4q21.21	BMP2K	rs149914551-A	0.035076	2E-10		0.038634922	[0.027-0.051] unit increase	Affymetrix [93095623] (imputed)	N
1193	chr4	79697869	79697870	rs149914551	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	4q21.21	BMP2K	rs149914551-A	0.0350740000000001	5E-13		0.04390581	[0.032-0.056] unit increase	Affymetrix [93095623] (imputed)	N
1193	chr4	79697869	79697870	rs149914551	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	4q21.21	Intergenic	rs149914551-A	0.0352	8E-13	(MTAG)	0.0349	[0.025-0.045] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1193	chr4	79697869	79697870	rs149914551	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	4q21.21	Intergenic	rs149914551-A	0.035	2E-13	(MTAG)	0.0336	[0.025-0.043] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1193	chr4	79697869	79697870	rs149914551	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	4q21.21	Intergenic	rs149914551-A	0.0345	7E-9	(MTAG)	0.0224	[0.015-0.03] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1193	chr4	79697892	79697897	rs201253367	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	4q21.21	BMP2K	rs201253367-A	0.176498	3E-11		0.019694569	[0.014-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1193	chr4	79707559	79707561	rs372750863	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	4q21.21	BMP2K	rs372750863-A	0.747868	2E-17		0.023620829	[0.018-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
1193	chr4	79714653	79714654	rs115024193	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	4q21.21	BMP2K	rs115024193-A	0.034674	8E-11		0.039679136	[0.028-0.052] unit decrease	Affymetrix [93095623] (imputed)	N
1193	chr4	79714653	79714654	rs115024193	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	4q21.21	NR	rs115024193-A	0.035018	2E-10		0.03281	[0.023-0.043] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
1193	chr4	79714653	79714654	rs115024193	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	4q21.21		rs115024193-?	NR	8E-12				NR [~ 8900000] (imputed)	N
1193	chr4	79714653	79714654	rs115024193	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	4q21.21	Intergenic	rs115024193-T	0.9649	2E-11		0.0355	[0.025-0.046] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1193	chr4	79720776	79720777	rs3775519	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	4q21.21	NR	rs3775519-?	NR	8E-10	(CXCL10)	1.03802	[0.71-1.37] unit increase	Illumina [11901634] (imputed)	N
1193	chr4	79720949	79720950	rs62310803	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	4q21.21		rs62310803-?	NR	5E-12				NR [~ 8900000] (imputed)	N
1193	chr4	79753408	79753409	rs60830908	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q21.21	NR	rs60830908-C	0.953067	1E-14				Affymetrix, Illumina [22063850] (imputed)	N
1193	chr4	79774313	79774314	rs3775514	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	4q21.21	BMP2K	rs3775514-A	0.045285	1E-11		0.036262225	[0.026-0.047] unit decrease	Affymetrix [93095623] (imputed)	N
1193	chr4	79793371	79793373	rs71216238	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	4q21.21		rs71216238-C	NR	1E-8		0.0166	[0.011-0.022] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
1193	chr4	79821962	79821963	rs7691825	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	4q21.21	NR	rs7691825-T	0.04644	2E-13		0.031954	[0.023-0.04] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
1194	chr4	79824232	79824233	rs17003488	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q21.21	NR	rs17003488-C	0.0834378	7E-26				Affymetrix, Illumina [20825802] (imputed)	N
1194	chr4	79830673	79830674	rs28410307	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin	108,054 Japanese ancestry individuals	NA	4q21.21	BMP2K	rs28410307-?	NR	2E-9		0.02906	[0.02-0.039] unit increase novel	Illumina [6108953] (imputed)	N
1194	chr4	79833281	79833282	rs76520492	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	4q21.21	NR	rs76520492-?	NR	2E-9	(CXCL10)	1.05198	[0.71-1.4] unit increase	Illumina [11901634] (imputed)	N
1194	chr4	79834325	79834326	rs17008951	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	4q21.21	NR	rs17008951-T	0.955452	8E-15		0.035511	[0.027-0.044] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
1194	chr4	79835847	79835848	rs183725142	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interferon gamma-induced protein 10 levels	3,685 Finnish ancestry individuals	NA	4q21.21	NR	rs183725142-G		3E-6		0.6188	[0.36-0.88] SD units decrease	NR [10700000] (imputed)	N
1194	chr4	79835851	79835852	rs59285639	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	4q21.21	PAQR3, BMP2K	rs59285639-A	0.043888	3E-10		0.034668095	[0.024-0.045] unit increase	Affymetrix [93095623] (imputed)	N
1194	chr4	79835851	79835852	rs59285639	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	4q21.21	PAQR3, BMP2K	rs59285639-A	0.043885	5E-11		0.035994783	[0.025-0.047] unit increase	Affymetrix [93095623] (imputed)	N
1194	chr4	79835851	79835852	rs59285639	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	4q21.21	PAQR3, BMP2K	rs59285639-A	0.04388	6E-11		0.03593443	[0.025-0.047] unit increase	Affymetrix [93095623] (imputed)	N
1194	chr4	79839982	79839983	rs7671578	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q21.21	NR	rs7671578-T	0.0836683	8E-18				Affymetrix, Illumina [24246363] (imputed)	N
1194	chr4	79865317	79865318	rs143611672	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Megasphaera sp900066485 abundance in stool	5,959 Finnish ancestry individuals	NA	4q21.21		rs143611672-T	0.0187584	1E-8		0.14139	[0.093-0.19] unit increase	Illumina [7980478] (imputed)	N
1194	chr4	79887706	79887707	rs76101924	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q21.21	NR	rs76101924-A	0.07491	3E-8	(ANP32A)	0.04805	NR unit increase	Illumina [1671387] (imputed)	N
1195	chr4	79970207	79970208	rs10032909	26606652	Alarcon-Riquelme ME	2015-11-25	Arthritis Rheumatol	Genome-Wide Association Study in an Amerindian Ancestry Population Reveals Novel Systemic Lupus Erythematosus Risk Loci and the Role of European Admixture.	Systemic lupus erythematosus	862 Native American ancestry-enriched North American cases, 531 Native American ancestry-enriched South American cases, 1,973 Native American ancestry-enriched North American controls, 344 Native American ancestry-enriched South American controls	NA	4q21.21	LOC100505875	rs10032909-G	0.013	1E-6		2.42	[1.69-3.48]	Illumina [580483] (imputed)	N
1196	chr4	80109463	80109464	rs4975077	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	4q21.21	NAA11	rs4975077-A	0.816	5E-8		0.0083	[0.0054-0.0112] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
1196	chr4	80192823	80192824	rs1484141	33907183	Guo S	2021-04-27	Transl Psychiatry	Genome wide association study identifies four loci for early onset schizophrenia.	Early-onset schizophrenia	1,256 Han Chinese ancestry cases, 2,661 Han Chinese ancestry controls	903 Han Chinese ancestry cases, 3,900 Han Chinese ancestry controls	4q21.21	NR	rs1484141-C	NR	9E-8		0.791	[NR]	Illumina [4867007] (imputed)	N
1196	chr4	80203424	80203425	rs6848123	34380480	Liu J	2021-08-12	BMC Med	Genome-wide association study followed by trans-ancestry meta-analysis identify 17 new risk loci for schizophrenia.	Schizophrenia	26,271 East Asian ancestry cases, 40,071 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	4q21.21		rs6848123-A	NR	1E-8		1.05		Illumina [NR] (imputed)	N
1196	chr4	80203424	80203425	rs6848123	34380480	Liu J	2021-08-12	BMC Med	Genome-wide association study followed by trans-ancestry meta-analysis identify 17 new risk loci for schizophrenia.	Schizophrenia	26,271 East Asian ancestry cases, 40,071 East Asian ancestry controls	NA	4q21.21		rs6848123-A	NR	6E-6		1.08		Illumina [NR] (imputed)	N
1196	chr4	80203424	80203425	rs6848123	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Subjective well-being	298,420 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	4q21.21	NR	rs6848123-A	0.4979	4E-6		0.013565281	[0.0078-0.0193] unit decrease	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
1196	chr4	80204000	80204001	rs28454198	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Subjective well-being	388,538 European ancestry individuals	NA	4q21.21	NR	rs28454198-G	0.4963	9E-10		0.0139	[0.0094-0.0184] unit decrease	Illumina [NR] (imputed)	N
1196	chr4	80204716	80204717	rs12642606	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Subjective well-being (MTAG)	388,538 European ancestry individuals	NA	4q21.21	NR	rs12642606-G	0.5038	6E-11		0.0121	[0.0086-0.0156] unit increase	Illumina [NR] (imputed)	N
1196	chr4	80204716	80204717	rs12642606	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms (MTAG)	354,862 European ancestry individuals	NA	4q21.21	NR	rs12642606-G	0.507	2E-8		0.012	[0.0079-0.0161] unit decrease	Illumina [NR] (imputed)	N
1196	chr4	80206271	80206272	rs6816922	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	4q21.21	PAQR3, NAA11	rs6816922-C	0.46230000000000004	4E-8		1.0202013		Affymetrix [11880941] (imputed)	N
1197	chr4	80217596	80217597	rs1484144	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Attention deficit hyperactivity disorder (MTAG)	at least 19,099 European ancestry cases, at least 34,194 European ancestry controls	2,726 European ancestry cases, 16,299 European ancestry controls	4q21.21	NR	rs1484144-T	0.4821	2E-8		0.067868955	[0.044-0.092] unit increase	NR [NR]	N
1197	chr4	80217596	80217597	rs1484144	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	4q21.21	NAA11	rs1484144-?		4E-9				NR [6786993] (imputed)	N
1197	chr4	80217740	80217741	rs1484145	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	4q21.21		rs1484145-?	NR	2E-11		0.0196	unit increase	NR [NR]	N
1197	chr4	80218411	80218412	rs9998799	33169155	Bigdeli TB	2020-11-10	Schizophr Bull	Genome-Wide Association Studies of Schizophrenia and Bipolar Disorder in a Diverse Cohort of US Veterans.	Schizophrenia	37,759 European ancestry cases, 7,509 African American cases, 1,234 Latino cases, 22,778 East Asian ancestry cases, 91,590 European ancestry controls, 8,337 African American controls, 3,090 Latino controls, 35,362 East Asian ancestry controls	NA	4q21.21	NAA11	rs9998799-T	NR	3E-9		1.05	[1.03-1.07]	Affymetrix [up to 49134253] (imputed)	N
1197	chr4	80234647	80234648	rs1484140	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Subjective well-being	298,420 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	4q21.21	NR	rs1484140-A	0.5441	3E-6		0.0122	[0.0071-0.0173] unit decrease	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
1197	chr4	80247341	80247342	rs17494938	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Life satisfaction	166,205 European ancestry individuals	NA	4q21.21	NR	rs17494938-T	0.6262	5E-8		0.0196	[0.013-0.027] unit decrease	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
1197	chr4	80256004	80256005	rs56326811	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	4q21.21	NR	rs56326811-?	NR	4E-8				Illumina [7760689] (imputed)	N
1197	chr4	80272995	80272996	rs115050282	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q21.21	NR	rs115050282-T	0.01045	3E-9	(ORM1)	0.9548	NR unit increase	Illumina [1671387] (imputed)	N
1197	chr4	80272995	80272996	rs115050282	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q21.21	NR	rs115050282-T	0.01045	1E-8	(SERPINA1)	3.017	NR unit increase	Illumina [1671387] (imputed)	N
1197	chr4	80297250	80297251	rs192876988	31469419	Manichaikul A	2019-08-30	Int J Cancer	Identification of novel epithelial ovarian cancer loci in Women of African Ancestry.	High-grade serous ovarian cancer	537 African ancestry cases, 1,235 African ancestry controls	NA	4q21.21	LOC105377300, GK2	rs192876988-C	0.046	9E-7		3.01	[1.94-4.68]	Illumina [11083029] (imputed)	N
1197	chr4	80322958	80322959	rs17003752	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	4q21.21		rs17003752-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1197	chr4	80330742	80330743	rs28459916	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	4q21.21	GK2	rs28459916-A	0.1384	4E-8		0.01731356	[0.011-0.023] unit decrease	Affymetrix [11514654] (imputed)	N
1198	chr4	80363208	80363209	rs140082972	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	4q21.21	NR	rs140082972-?	NR	7E-14	(CXCL10)	2.5855	[1.91-3.26] unit increase	Illumina [11901634] (imputed)	N
1198	chr4	80419864	80419865	rs11736348	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	4q21.21	NR	rs11736348-T		1E-12		0.1	[0.08-0.12] unit increase	NR [NR]	N
1198	chr4	80435045	80435046	rs58777020	29520036	Stein MB	2018-03-08	Mol Psychiatry	Genome-wide analysis of insomnia disorder.	Insomnia	2,297 European American cases, 334 African American cases, 606 Latino American cases, 9,176 European American controls, 2,345 African American controls, 2,893 Latino American controls	NA	4q21.21	LINC00989	rs58777020-T	NR	6E-7		2.84		Illumina [at least 360704] (imputed)	N
1199	chr4	80484191	80484192	rs77495688	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	4q21.21	NR	rs77495688-?	NR	6E-11	(CXCL10)	1.6881	[1.18-2.19] unit increase	Illumina [11901634] (imputed)	N
1199	chr4	80508787	80508788	rs13129838	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Myopia	106,086 European ancestry cases, 85,757 European ancestry controls	NA	4q21.21	GK2, ANTXR2	rs13129838-?	NR	3E-15		1.068	[1.051-1.086]	Illumina [13762925] (imputed)	N
1199	chr4	80524333	80524334	rs35487709	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent	41,073 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	4q21.21	NR	rs35487709-T	0.6859	2E-8		0.0823	[0.053-0.111] unit increase	Affymetrix, Illumina [~ 9300000] (imputed)	N
1199	chr4	80530670	80530671	rs9307551	23396134	Verhoeven VJ	2013-02-10	Nat Genet	Genome-wide meta-analyses of multiancestry cohorts identify multiple new susceptibility loci for refractive error and myopia.	Refractive error	37,382 European ancestry individuals, 3,995 Chinese ancestry individuals, 2,273 Malay ancestry individuals, 2,108 Indian ancestry individuals	NA	4q21.21	LOC100506035	rs9307551-A	0.25	1E-8		0.099	[0.066-0.132] unit decrease	Affymetrix, Illumina [2500000] (imputed)	N
1199	chr4	80537637	80537638	rs7662551	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	4q21.21	LOC100506035, PCAT4	rs7662551-A	0.7232	1E-17		8.53	[NR] z score increase	Affymetrix, Illumina [~ 11000000] (imputed)	N
1199	chr4	80537637	80537638	rs7662551	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Myopia (age of diagnosis)	104,293 European ancestry individuals	NA	4q21.21	NR	rs7662551-A	0.7478	3E-12		0.056	[0.04-0.072] unit increase	Illumina [~ 10600000] (imputed)	N
1199	chr4	80564507	80564508	rs10518224	19197348	Lowe JK	2009-02-06	PLoS Genet	Genome-wide association studies in an isolated founder population from the Pacific Island of Kosrae.	Quantitative traits	2,906 Kosraen individuals	NA	4q21.21	intergenic	rs10518224-A	0.23	7E-6	(TG)	0.19	[NR] mg/dL increase	Affymetrix [408775]	N
1199	chr4	80572445	80572446	rs184765639	30242048	Chen B	2018-09-21	J Neurosci	Genomic analyses of visual cognition: perceptual rivalry and top-down control.	Perceptual rivalry (voluntary modulation strength)	1,876 Han Chinese ancestry individuals	744 Han Chinese ancestry individuals	4q21.21	LOC105377301	rs184765639-?	NR	3E-10		2.26	[1.55-2.97] unit increase	Illumina [7989184] (imputed)	N
1199	chr4	80605579	80605580	rs17004060	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	4q21.21	GK2	rs17004060-?	NR	3E-6	(lysine)	0.22298808	[0.13-0.32] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1200	chr4	80609965	80609966	rs72649373	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	4q21.21	NR	rs72649373-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
1200	chr4	80671378	80671379	rs13147821	32131869	Arbeeva L	2020-03-04	J Foot Ankle Res	Genome-wide meta-analysis identified novel variant associated with hallux valgus in Caucasians.	Hallux valgus	609 European ancestry male cases, 1,666 European ancestry male controls	NA	4q21.21	RP11-576N17.4	rs13147821-T	0.26	3E-6		1.4492754	[1.23-1.69]	Affymetrix, Illumina [up to 7729175] (imputed)	N
1200	chr4	80691562	80691563	rs62299775	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	4q21.21	NR	rs62299775-?	NR	5E-13	(CXCL10)	1.94967	[1.42-2.48] unit increase	Illumina [11901634] (imputed)	N
1200	chr4	80717181	80717182	rs35851183	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	4q21.21		rs35851183-G	NR	1E-8		0.0096	[0.0063-0.0129] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1200	chr4	80717181	80717182	rs35851183	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	4q21.21		rs35851183-G	NR	3E-13		0.0141	[0.01-0.018] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1200	chr4	80717181	80717182	rs35851183	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	4q21.21		rs35851183-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1200	chr4	80717181	80717182	rs35851183	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	4q21.21	NA	rs35851183-A	0.6424	1E-9		0.0121	[0.0082-0.016] unit decrease	NR [~ 27400000] (imputed)	N
1200	chr4	80726590	80726591	rs11098894	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Abstraction and mental flexibility	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	4q21.21	PCAT4	rs11098894-T	NR	2E-6		0.15861136	[0.094-0.223] unit decrease	Illumina [> 6200000] (imputed)	N
1201	chr4	80796054	80796055	rs58383713	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	4q21.21	ANTXR2	rs58383713-A	0.196	3E-9		0.002	[0.0012-0.0028] unit decrease	Affymetrix [15275733] (imputed)	N
1201	chr4	80806941	80806942	rs4320094	33742053	Wells HRR	2021-03-19	Sci Rep	Genome-wide association study suggests that variation at the RCOR1 locus is associated with tinnitus in UK Biobank.	Tinnitus (severest)	87,314 British ancestry individuals	NA	4q21.21	NR	rs4320094-T	NR	9E-7		0.00902273	[0.0054-0.0126] unit decrease	Affymetrix [9740198] (imputed)	N
1201	chr4	80808819	80808820	rs11724750	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	4q21.21	NR	rs11724750-?	NR	7E-11				Affymetrix [~ 8270000] (imputed)	N
1201	chr4	80810452	80810453	rs7654647	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	4q21.21	NR	rs7654647-T	0.4067	7E-10		0.015544534	[0.011-0.02] unit increase	Affymetrix [10549349] (imputed)	N
1201	chr4	80811226	80811227	rs13104584	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		4q21.21	ANTXR2	rs13104584-G	0.592379	6E-10		0.00864396	[0.0059-0.0114] unit decrease	Affymetrix [12370749]	N
1201	chr4	80812959	80812960	rs6847975	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	4q21.21	NR	rs6847975-?	NR	5E-10		0.13752	[0.094-0.181] unit increase	Affymetrix [7794483] (imputed)	N
1201	chr4	80812959	80812960	rs6847975	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	4q21.21	NR	rs6847975-?	NR	2E-7	(male)	0.14127	[0.088-0.195] unit increase	Affymetrix [7794483] (imputed)	N
1201	chr4	80817247	80817248	rs142694335	28282560	Pott J	2017-02-24	Atherosclerosis	Genome-wide meta-analysis identifies novel loci of plaque burden in carotid artery.	Carotid plaque burden	7,189 European ancestry individuals	NA	4q21.21	ANTXR2	rs142694335-C	NR	3E-6		0.3858657	[0.23-0.55] unit decrease	Affymetrix [9576485] (imputed)	N
1201	chr4	80819629	80819630	rs6842105	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	4q21.21	NR	rs6842105-T		3E-17		0.1	[0.08-0.12] unit increase	NR [NR]	N
1201	chr4	80824526	80824527	rs11946205	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	4q21.21	ANTXR2	rs11946205-T	0.417719	5E-19		0.020580243	[0.016-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1201	chr4	80827061	80827062	rs7747	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	4q21.21	ANTXR2	rs7747-T	0.2022	2E-12		7.031	[NR] z score increase	Affymetrix, Illumina [~ 11000000] (imputed)	N
1201	chr4	80837748	80837749	rs11722683	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	4q21.21		rs11722683-A	0.554	1E-13				Affymetrix [10369434] (imputed)	N
1201	chr4	80843792	80843793	rs77676437	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Myopia (age of diagnosis)	104,293 European ancestry individuals	NA	4q21.21	NR	rs77676437-T	0.2019	5E-12		0.0616	[0.044-0.079] unit increase	Illumina [~ 10600000] (imputed)	N
1201	chr4	80850757	80850758	rs4234847	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	4q21.21	NR	rs4234847-?	NR	6E-6		0.119996	[0.068-0.172] unit decrease	NR [13958389] (imputed)	N
1201	chr4	80850804	80850805	rs4234848	25781172	Avramopoulos D	2015-03-17	PLoS One	Infection and inflammation in schizophrenia and bipolar disorder: a genome wide study for interactions with genetic variation.	Bipolar disorder (inflammation and infection response interaction)	397 Ashkenazi Jewish bipolar disorder cases, 241  Ashkenazi Jewish controls	NA	4q21.21	ANTXR2, PCAT4	rs4234848-?		4E-6	(anti-HSV1)			Affymetrix [516638]	N
1202	chr4	80879802	80879803	rs7655441	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	4q21.21	ANTXR2	rs7655441-T	0.7408	7E-12		0.02751349	[0.02-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
1202	chr4	80887366	80887366	rs139246187	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA		NR	rs139246187-I	0.530042	3E-55		0.031991	[0.028-0.036] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1202	chr4	80887366	80887366	rs139246187	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA		ANTXR2	rs139246187-TAGAC	0.5295	2E-14		0.02722963	[0.02-0.034] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1202	chr4	80887968	80887969	rs11098964	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	4q21.21		rs11098964-A	0.47	6E-13				Affymetrix [10369434] (imputed)	N
1202	chr4	80887968	80887969	rs11098964	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	4q21.21	ANTXR2	rs11098964-?	NR	2E-8	(subset analysis)			Illumina [130052]	N
1202	chr4	80897618	80897619	rs113323321	31996736	Elsheikh SSM	2020-01-29	Sci Rep	Genome-Wide Association Study of Brain Connectivity Changes for Alzheimer's Disease.	Longitudinal brain connectivity change (global efficiency)	57 European ancestry individuals	NA	4q21.21	NR	rs113323321-C	NR	5E-9		5.85	z score increase	NR [9015039] (imputed)	N
1202	chr4	80897618	80897619	rs113323321	31996736	Elsheikh SSM	2020-01-29	Sci Rep	Genome-Wide Association Study of Brain Connectivity Changes for Alzheimer's Disease.	Longitudinal brain connectivity change (characteristic path length)	57 European ancestry individuals	NA	4q21.21	NR	rs113323321-C	NR	2E-7		5.22	z score increase	NR [9015039] (imputed)	N
1202	chr4	80897998	80897999	rs10027407	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	4q21.21	NR	rs10027407-G	0.530334	3E-13		0.013404	[0.0098-0.017] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1202	chr4	80898026	80898027	rs10027415	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q21.21	NR	rs10027415-T	0.586579	3E-34				Affymetrix, Illumina [23472807] (imputed)	N
1202	chr4	80906992	80906994	rs572381265	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	4q21.21	ANTXR2	rs572381265-C	0.660938	2E-9		0.01447943	[0.0098-0.0192] unit decrease	Affymetrix [93095623] (imputed)	N
1202	chr4	80909459	80909460	rs66968950	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	4q21.21		rs66968950-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1202	chr4	80911370	80911371	rs12499307	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	4q21.21		rs12499307-?	NR	7E-12				NR [~ 8900000] (imputed)	N
1202	chr4	80921369	80921370	rs10050061	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q21.21	NR	rs10050061-C	0.413689	3E-13				Affymetrix, Illumina [24649327] (imputed)	N
1202	chr4	80923408	80923409	rs62298617	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	4q21.21		rs62298617-G	0.47	3E-23				Affymetrix [10369434] (imputed)	N
1202	chr4	80924206	80924207	rs12510805	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	4q21.21	ANTXR2	rs12510805-G	0.529462	5E-28		0.024268007	[0.02-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
1202	chr4	80925645	80925649	rs371069425	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	4q21.21		rs371069425-T	NR	4E-12		0.0142	[0.01-0.018] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1202	chr4	80927000	80927001	rs12504282	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	4q21.21	ANTXR2	rs12504282-T	0.5284	7E-23		0.03544755	[0.028-0.043] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1202	chr4	80933224	80933225	rs7682733	32438682	Mateos MK	2020-05-19	Cancers (Basel)	Genome-Wide Association Meta-Analysis of Single-Nucleotide Polymorphisms and Symptomatic Venous Thromboembolism during Therapy for Acute Lymphoblastic Leukemia and Lymphoma in Caucasian Children.	Childhood ALL/LBL (acute lymphoblastic leukemia/lymphoblastic lymphoma) treatment-related venous thromboembolism	92 European ancestry cases, 1,481 European ancestry controls	NA	4q21.21	ANTXR2	rs7682733-?		3E-7		3.2258062	[2.08-5]	Illumina [NR] (imputed)	N
1202	chr4	80937650	80937651	rs9992915	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	4q21.21	Intergenic	rs9992915-A	0.5269	3E-8	(MTAG)	0.0073	[0.0048-0.0098] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1202	chr4	80940591	80940592	rs10012656	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	4q21.21		rs10012656-A	NR	1E-38		0.0305	[0.026-0.035] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
1202	chr4	80944815	80944816	rs4596195	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	4q21.21	ANTXR2	rs4596195-A	0.529434	3E-47		0.031894658	[0.028-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
1202	chr4	80946474	80946475	rs4389526	21743469	Evans DM	2011-07-10	Nat Genet	Interaction between ERAP1 and HLA-B27 in ankylosing spondylitis implicates peptide handling in the mechanism for HLA-B27 in disease susceptibility.	Ankylosing spondylitis	3,023 European ancestry cases, 8,779 European ancestry controls	2,111 European ancestry cases, 4,483 European ancestry controls	4q21.21	ANTXR2	rs4389526-A	0.63	9E-8				Illumina [2223620] (imputed)	N
1202	chr4	80949828	80949829	rs4333130	20062062	Reveille JD	2010-01-10	Nat Genet	Genome-wide association study of ankylosing spondylitis identifies non-MHC susceptibility loci.	Ankylosing spondylitis	2,053 European ancestry cases, 5,140 European ancestry controls	898 European ancestry cases, 1,518 European ancestry controls	4q21.21	ANTXR2	rs4333130-?	0.64	9E-8		1.22	[1.12-1.32]	Illumina [288662]	N
1202	chr4	80953475	80953476	rs4355335	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	4q21.21		rs4355335-C	0.371	3E-18				Affymetrix [10369434] (imputed)	N
1203	chr4	81073219	81073220	rs2867695	32589924	Bi W	2020-06-23	Am J Hum Genet	A Fast and Accurate Method for Genome-Wide Time-to-Event Data Analysis and Its Application to UK Biobank.	Essential hypertension (time to event)	76,566 British ancestry cases, 206,305 British ancestry controls	NA	4q21.21	ANTXR2, PRDM8	rs2867695-?	NR	1E-7				NR [~ 24000000] (imputed)	N
1203	chr4	81073219	81073220	rs2867695	26242244	Ma Y	2015-08-05	Sci Rep	Association of chromosome 5q21.3 polymorphisms with the exploratory eye movement dysfunction in schizophrenia.	Exploratory eye movement dysfunction in schizophrenia (cognitive search score)	128 Han Chinese ancestry cases	NA	4q21.21	PRDM8	rs2867695-?	NR	4E-6		1.412	[0.84-1.99] unit decrease	Illumina [498648]	N
1203	chr4	81084348	81084349	rs2867700	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	4q21.21	NR	rs2867700-A	0.833	6E-8		1.113	[1.07-1.15]	Illumina [11270530] (imputed)	N
1203	chr4	81106181	81106182	rs1996455	31123309	Rayner C	2019-05-23	Transl Psychiatry	A genome-wide association meta-analysis of prognostic outcomes following cognitive behavioural therapy in individuals with anxiety and depressive disorders.	Response to cognitive-behavioural therapy in major depressive disorder	832 adult cases	NA	4q21.21	ANTXR2, C4orf22, FGF5, PRDM8	rs1996455-A	0.3	5E-6		0.26	[0.14-0.38] unit decrease	Illumina [at least 4710000] (imputed)	N
1204	chr4	81153105	81153106	rs141610938	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		4q21.21	PRDM8	rs141610938-C	NR	6E-13		0.0808353	NR unit increase	NR [NR] (imputed)	N
1204	chr4	81157702	81157703	rs1902859	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Diastolic blood pressure	11,380 African American individuals, 21,549 Hispanic/Latino individuals, 1,086 Asian ancestry individuals, 636 Native American ancestry individuals, 782 individuals	NA	4q21.21	NR	rs1902859-?	NR	6E-8		0.6099869	[0.39-0.83] unit increase	Illumina [32101933] (imputed)	N
1204	chr4	81157702	81157703	rs1902859	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	4q21.21	PRDM8-FGF5	rs1902859-T	0.67	1E-19	(Japanese)	0.7671	[0.6-0.93] unit decrease	Illumina [6200000] (imputed)	N
1204	chr4	81157702	81157703	rs1902859	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Pulse pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 Japanese ancestry individuals	4q21.21	PRDM8, FGF5	rs1902859-T	0.6674	9E-9	(Japanese)	0.335	[0.22-0.45] unit decrease	Illumina [6200000] (imputed)	N
1204	chr4	81157702	81157703	rs1902859	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	4q21.21	PRDM8, FGF5	rs1902859-T	0.6674	8E-20	(Japanese)	0.5438	[0.43-0.66] unit decrease	Illumina [6200000] (imputed)	N
1204	chr4	81157702	81157703	rs1902859	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Hypertension	22,566 Japanese ancestry cases, 28,226 Japanese ancestry controls	8,809 East Asian ancestry cases, 13,663 East Asian ancestry controls, 105,253 European ancestry individuals	4q21.21	PRDM8, FGF5	rs1902859-T	0.6674	4E-14	(Japanese)	0.112	[0.083-0.141] unit decrease	Illumina [6200000] (imputed)	N
1204	chr4	81157702	81157703	rs1902859	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	4q21.21	PRDM8-FGF5	rs1902859-T	0.6674	1E-15	(Japanese)	0.4309	[0.33-0.54] unit decrease	Illumina [6200000] (imputed)	N
1204	chr4	81157702	81157703	rs1902859	25249183	Lu X	2014-09-23	Hum Mol Genet	Genome-wide association study in Chinese identifies novel loci for blood pressure and hypertension.	Systolic blood pressure	11,816 Han Chinese ancestry individuals	69,146 Han Chinese ancestry individuals	4q21.21	FGF5	rs1902859-C	0.41	2E-22		1.34	[1.07-1.61] unit increase	Affymetrix, Illumina [2485448] (imputed)	N
1204	chr4	81157702	81157703	rs1902859	25249183	Lu X	2014-09-23	Hum Mol Genet	Genome-wide association study in Chinese identifies novel loci for blood pressure and hypertension.	Hypertension	5,065 Han Chinese ancestry cases, 4,404 Han Chinese ancestry controls	29,799 Han Chinese ancestry cases, 39,347 Han Chinese ancestry controls	4q21.21	FGF5	rs1902859-C	0.41	8E-18				Affymetrix, Illumina [2485448] (imputed)	N
1204	chr4	81157702	81157703	rs1902859	25249183	Lu X	2014-09-23	Hum Mol Genet	Genome-wide association study in Chinese identifies novel loci for blood pressure and hypertension.	Diastolic blood pressure	11,816 Han Chinese ancestry individuals	69,146 Han Chinese ancestry individuals	4q21.21	FGF5	rs1902859-C	0.41	4E-20		0.71	[0.55-0.87] unit increase	Affymetrix, Illumina [2485448] (imputed)	N
1204	chr4	81158544	81158545	rs13149993	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	4q21.21	PRDM8-FGF5	rs13149993-A	0.33	3E-20	(Japanese)	0.7331	[0.58-0.89] unit increase	Illumina [6200000] (imputed)	N
1204	chr4	81158544	81158545	rs13149993	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Pulse pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 Japanese ancestry individuals	4q21.21	PRDM8, FGF5	rs13149993-A	0.3296	1E-8	(Japanese)	0.314	[0.21-0.42] unit increase	Illumina [6200000] (imputed)	N
1204	chr4	81158544	81158545	rs13149993	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	4q21.21	PRDM8, FGF5	rs13149993-A	0.3296	1E-20	(Japanese)	0.5243	[0.41-0.63] unit increase	Illumina [6200000] (imputed)	N
1204	chr4	81158544	81158545	rs13149993	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Hypertension	22,566 Japanese ancestry cases, 28,226 Japanese ancestry controls	8,809 East Asian ancestry cases, 13,663 East Asian ancestry controls, 105,253 European ancestry individuals	4q21.21	PRDM8, FGF5	rs13149993-A	0.3296	3E-15	(Japanese)	0.1098	[0.083-0.137] unit increase	Illumina [6200000] (imputed)	N
1204	chr4	81158544	81158545	rs13149993	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	4q21.21	PRDM8-FGF5	rs13149993-A	0.3296	2E-16	(Japanese)	0.4191	[0.32-0.52] unit increase	Illumina [6200000] (imputed)	N
1204	chr4	81158544	81158545	rs13149993	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Pulse pressure x alcohol consumption interaction (2df test)	91,099 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	238,053 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,447 Hispanic ancestry drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic ancestry non-drinkers	4q21.21	LOC105377304, FGF5	rs13149993-A	0.33	8E-163	(Asian, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1204	chr4	81158544	81158545	rs13149993	26390057	Kato N	2015-09-21	Nat Genet	Trans-ancestry genome-wide association study identifies 12 genetic loci influencing blood pressure and implicates a role for DNA methylation.	Mean arterial pressure	31,516 East Asian ancestry individuals,  35,352 European ancestry individuals, 33,126 South Asian ancestry individuals	87,205 individuals, 48,268 East Asian ancestry individuals, 68,456 European ancestry individuals and 16,328 South Asian ancestry individuals	4q21.21	FGF5	rs13149993-A	0.4038	9E-12	(East Asians)	0.7718	[0.55-0.99] mmHg increase	Affymetrix, Illumina, Perlegen [~ 2100000] (imputed)	N
1204	chr4	81158544	81158545	rs13149993	26390057	Kato N	2015-09-21	Nat Genet	Trans-ancestry genome-wide association study identifies 12 genetic loci influencing blood pressure and implicates a role for DNA methylation.	Mean arterial pressure	31,516 East Asian ancestry individuals,  35,352 European ancestry individuals, 33,126 South Asian ancestry individuals	87,205 individuals, 48,268 East Asian ancestry individuals, 68,456 European ancestry individuals and 16,328 South Asian ancestry individuals	4q21.21	FGF5	rs13149993-A	0.3421	2E-17		0.5673	[0.44-0.7] mmHg increase	Affymetrix, Illumina, Perlegen [~ 2100000] (imputed)	N
1204	chr4	81158544	81158545	rs13149993	26390057	Kato N	2015-09-21	Nat Genet	Trans-ancestry genome-wide association study identifies 12 genetic loci influencing blood pressure and implicates a role for DNA methylation.	Mean arterial pressure	31,516 East Asian ancestry individuals,  35,352 European ancestry individuals, 33,126 South Asian ancestry individuals	87,205 individuals, 48,268 East Asian ancestry individuals, 68,456 European ancestry individuals and 16,328 South Asian ancestry individuals	4q21.21	FGF5	rs13149993-A	0.2838	1E-7	(South Asians)	0.6454	[0.41-0.89] mmHg increase	Affymetrix, Illumina, Perlegen [~ 2100000] (imputed)	N
1204	chr4	81164722	81164723	rs1458038	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atrial fibrillation/atrial flutter	29,212 European ancestry cases, 400,539 European ancestry controls, 4,150 East Asian ancestry cases, 155,540 East Asian ancestry controls	NA	4q21.21		rs1458038-T	NR	1E-10		0.0649	[0.045-0.084] unit increase	Affymetrix, Illumina [25830072] (imputed)	N
1204	chr4	81164722	81164723	rs1458038	33239696	Steinthorsdottir V	2020-11-25	Nat Commun	Genetic predisposition to hypertension is associated with preeclampsia in European and Central Asian women.	Preeclampsia (maternal genotype effect)	2,296 Central Asian ancestry cases, 2,059 Central Asian ancestry controls, 7,219 European ancestry cases, 155,660 European ancestry controls	592 Kazakh ancestry cases, 361 Kazakh ancestry controls, 2,043 European ancestry cases, 6,018 European ancestry controls	4q21.21		rs1458038-T	0.3288	1E-8		1.11	[1.07-1.15]	Illumina [11796347] (imputed)	N
1204	chr4	81164722	81164723	rs1458038	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	4q21.21	NR	rs1458038-T	0.292607	1E-32		0.024162	[0.02-0.028] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
1204	chr4	81164722	81164723	rs1458038	32709000	Jeong H	2020-07-17	Nutrients	Identifying Interactions between Dietary Sodium, Potassium, Sodium-Potassium Ratios, and FGF5 rs16998073 Variants and Their Associated Risk for Hypertension in Korean Adults.	Hypertension	8,178 Korean ancestry cases, 9,558 Korean ancestry controls	NA	4q21.21	NR	rs1458038-T	0.39	3E-22		1.26	[1.21-1.33]	Affymetrix [NR]	N
1204	chr4	81164722	81164723	rs1458038	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	4q21.21	FGF5	rs1458038-C	0.70861	7E-16		0.0185934	[0.014-0.023] unit increase	Affymetrix [NR] (imputed)	N
1204	chr4	81164722	81164723	rs1458038	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	4q21.21	FGF5	rs1458038-C	0.708532	6E-13		0.0165547	[0.012-0.021] unit increase	Affymetrix [NR] (imputed)	N
1204	chr4	81164722	81164723	rs1458038	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Systolic blood pressure	11,380 African American individuals, 21,549 Hispanic/Latino individuals, 1,086 Asian ancestry individuals, 636 Native American ancestry individuals, 782 individuals	NA	4q21.21	NR	rs1458038-?	NR	1E-8		1.029002	[0.67-1.38] unit increase	Illumina [32101933] (imputed)	N
1204	chr4	81164722	81164723	rs1458038	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Diastolic blood pressure	11,380 African American individuals, 21,549 Hispanic/Latino individuals, 1,086 Asian ancestry individuals, 636 Native American ancestry individuals, 782 individuals	NA	4q21.21	NR	rs1458038-?	NR	1E-9		0.7120345	[0.48-0.94] unit increase	Illumina [32101933] (imputed)	N
1204	chr4	81164722	81164723	rs1458038	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	4q21.21	FGF5	rs1458038-T	0.2993	9E-29		0.0032	[0.0024-0.004] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
1204	chr4	81164722	81164723	rs1458038	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	4q21.21	PRDM8-FGF5	rs1458038-T	0.34	3E-26	(Japanese)	0.8387	[0.68-0.99] unit increase	Illumina [6200000] (imputed)	N
1204	chr4	81164722	81164723	rs1458038	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Pulse pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 Japanese ancestry individuals	4q21.21	PRDM8, FGF5	rs1458038-T	0.3374	6E-11	(Japanese)	0.3576	[0.25-0.47] unit increase	Illumina [6200000] (imputed)	N
1204	chr4	81164722	81164723	rs1458038	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	4q21.21	PRDM8, FGF5	rs1458038-T	0.3374	4E-27	(Japanese)	0.6017	[0.49-0.71] unit increase	Illumina [6200000] (imputed)	N
1204	chr4	81164722	81164723	rs1458038	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Hypertension	22,566 Japanese ancestry cases, 28,226 Japanese ancestry controls	8,809 East Asian ancestry cases, 13,663 East Asian ancestry controls, 105,253 European ancestry individuals	4q21.21	PRDM8, FGF5	rs1458038-T	0.3374	2E-20	(Japanese)	0.1288	[0.1-0.16] unit increase	Illumina [6200000] (imputed)	N
1204	chr4	81164722	81164723	rs1458038	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	4q21.21	PRDM8-FGF5	rs1458038-T	0.3374	9E-22	(Japanese)	0.4836	[0.38-0.58] unit increase	Illumina [6200000] (imputed)	N
1204	chr4	81164722	81164723	rs1458038	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	4q21.21	FGF5	rs1458038-T	0.309	2E-9		1.04	[1.03-1.06]	Illumina [34740186] (imputed)	N
1204	chr4	81164722	81164723	rs1458038	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	4q21.21	PRDM8, FGF5	rs1458038-T	0.3	7E-6		1.04	[1.02-1.05]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1204	chr4	81164722	81164723	rs1458038	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure (cigarette smoking interaction)	80,552 European ancestry individuals, 27,118 African individuals, 13,438 Asian individuals, 8,805 Hispanic individuals	305,513 European ancestry individuals, 7,786 African individuals, 148,932 Asian individuals, 13,533 Hispanic individuals, 4,414 Brazilian individuals	4q21.21	FGF5	rs1458038-?	NR	1E-80				Affymetrix, Illumina [18800000] (imputed)	N
1204	chr4	81164722	81164723	rs1458038	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure (cigarette smoking interaction)	80,552 European ancestry individuals, 27,118 African individuals, 13,438 Asian individuals, 8,805 Hispanic individuals	305,513 European ancestry individuals, 7,786 African individuals, 148,932 Asian individuals, 13,533 Hispanic individuals, 4,414 Brazilian individuals	4q21.21	FGF5	rs1458038-?		7E-80				Affymetrix, Illumina [18800000] (imputed)	N
1204	chr4	81164722	81164723	rs1458038	28871152	Sofer T	2017-09-04	Sci Rep	Genome-Wide Association Study of Blood Pressure Traits by Hispanic/Latino Background: the Hispanic Community Health Study/Study of Latinos.	Systolic blood pressure	12,278 Hispanic individuals	2,764 Brazilian individuals, at least 22,000 African American individuals, at least 155,786 European ancestry individuals	4q21.21	FGF5	rs1458038-T	0.24	2E-7	(Hispanics)	1.3	[NR] unit increase	Illumina [27887661] (imputed)	N
1204	chr4	81164722	81164723	rs1458038	28871152	Sofer T	2017-09-04	Sci Rep	Genome-Wide Association Study of Blood Pressure Traits by Hispanic/Latino Background: the Hispanic Community Health Study/Study of Latinos.	Mean arterial pressure	12,278 Hispanic individuals	2,764 Brazilian individuals, at least 22,000 African American individuals, at least 155,786 European ancestry individuals	4q21.21	FGF5	rs1458038-T	0.24	5E-8		0.97	[0.62-1.32] unit increase	Illumina [27887661] (imputed)	N
1204	chr4	81164722	81164723	rs1458038	28871152	Sofer T	2017-09-04	Sci Rep	Genome-Wide Association Study of Blood Pressure Traits by Hispanic/Latino Background: the Hispanic Community Health Study/Study of Latinos.	Diastolic blood pressure	12,278 Hispanic individuals	2,764 Brazilian individuals, at least 22,000 African American individuals, at least 155,786 European ancestry individuals	4q21.21	FGF5	rs1458038-T	0.24	4E-7	(Hispanics)	0.8	[NR] unit increase	Illumina [27887661] (imputed)	N
1204	chr4	81164722	81164723	rs1458038	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Systolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	4q21.21	FGF5	rs1458038-T	0.302	1E-16	(EA, initial)	0.66	[0.51-0.81] unit increase	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
1204	chr4	81164722	81164723	rs1458038	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Pulse pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	4q21.21	FGF5	rs1458038-T	0.302	1E-6	(EA, initial)	0.252	[0.15-0.35] unit increase	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
1204	chr4	81164722	81164723	rs1458038	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Diastolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	4q21.21	FGF5	rs1458038-T	0.302	8E-17	(EA, initial)	0.403	[0.31-0.5] unit increase	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
1204	chr4	81164722	81164723	rs1458038	27736895	Franceschini N	2016-10-13	PLoS One	Variant Discovery and Fine Mapping of Genetic Loci Associated with Blood Pressure Traits in Hispanics and African Americans.	Systolic blood pressure	19,706 Hispanic individuals, 18,744 African American individuals	NA	4q21.21	FGF5	rs1458038-A	0.23	9E-10	(Hispanic)	1.37	[0.94-1.8] unit increase	Illumina [up to 196725]	N
1204	chr4	81164722	81164723	rs1458038	27736895	Franceschini N	2016-10-13	PLoS One	Variant Discovery and Fine Mapping of Genetic Loci Associated with Blood Pressure Traits in Hispanics and African Americans.	Diastolic blood pressure	19,706 Hispanic individuals, 18,744 African American individuals	NA	4q21.21	FGF5	rs1458038-A	0.23	1E-7	(Hispanic)	0.71	[0.46-0.96] unit increase	Illumina [up to 196725]	N
1204	chr4	81164722	81164723	rs1458038	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Systolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	4q21.21	FGF5	rs1458038-T	0.659	5E-24		0.659	[0.53-0.79] mm Hg increase	Affymetrix, Illumina, Perlegen [128272]	N
1204	chr4	81164722	81164723	rs1458038	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Diastolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	4q21.21	FGF5	rs1458038-T	0.659	7E-23		0.392	[0.31-0.47] mm Hg increase	Affymetrix, Illumina, Perlegen [128272]	N
1204	chr4	81164722	81164723	rs1458038	26390057	Kato N	2015-09-21	Nat Genet	Trans-ancestry genome-wide association study identifies 12 genetic loci influencing blood pressure and implicates a role for DNA methylation.	Systolic blood pressure	31,516 East Asian ancestry individuals,  35,352 European ancestry individuals, 33,126 South Asian ancestry individuals	87,205 individuals, 48,268 East Asian ancestry individuals, 68,456 European ancestry individuals and 16,328 South Asian ancestry individuals	4q21.21	FGF5	rs1458038-T	0.429	1E-7	(East Asians)	0.9738	[0.61-1.33] mmHg increase	Affymetrix, Illumina, Perlegen [2127883] (imputed)	N
1204	chr4	81164722	81164723	rs1458038	26390057	Kato N	2015-09-21	Nat Genet	Trans-ancestry genome-wide association study identifies 12 genetic loci influencing blood pressure and implicates a role for DNA methylation.	Systolic blood pressure	31,516 East Asian ancestry individuals,  35,352 European ancestry individuals, 33,126 South Asian ancestry individuals	87,205 individuals, 48,268 East Asian ancestry individuals, 68,456 European ancestry individuals and 16,328 South Asian ancestry individuals	4q21.21	FGF5	rs1458038-T	0.2828	5E-8	(South Asians)	0.9734	[0.62-1.32] mmHg increase	Affymetrix, Illumina, Perlegen [2127883] (imputed)	N
1204	chr4	81164722	81164723	rs1458038	26390057	Kato N	2015-09-21	Nat Genet	Trans-ancestry genome-wide association study identifies 12 genetic loci influencing blood pressure and implicates a role for DNA methylation.	Diastolic blood pressure	31,516 East Asian ancestry individuals,  35,352 European ancestry individuals, 33,126 South Asian ancestry individuals	87,205 individuals, 48,268 East Asian ancestry individuals, 68,456 European ancestry individuals, 16,328 South Asian ancestry individuals	4q21.21	FGF5	rs1458038-T	0.4297	3E-8	(East Asians)	0.6098	[0.39-0.83] mmHg increase	Affymetrix, Illumina, Perlegen [~ 2100000] (imputed)	N
1204	chr4	81164722	81164723	rs1458038	26390057	Kato N	2015-09-21	Nat Genet	Trans-ancestry genome-wide association study identifies 12 genetic loci influencing blood pressure and implicates a role for DNA methylation.	Diastolic blood pressure	31,516 East Asian ancestry individuals,  35,352 European ancestry individuals, 33,126 South Asian ancestry individuals	87,205 individuals, 48,268 East Asian ancestry individuals, 68,456 European ancestry individuals, 16,328 South Asian ancestry individuals	4q21.21	FGF5	rs1458038-T	0.3362	2E-14		0.4717	[0.35-0.59] mmHg increase	Affymetrix, Illumina, Perlegen [~ 2100000] (imputed)	N
1204	chr4	81164722	81164723	rs1458038	26390057	Kato N	2015-09-21	Nat Genet	Trans-ancestry genome-wide association study identifies 12 genetic loci influencing blood pressure and implicates a role for DNA methylation.	Diastolic blood pressure	31,516 East Asian ancestry individuals,  35,352 European ancestry individuals, 33,126 South Asian ancestry individuals	87,205 individuals, 48,268 East Asian ancestry individuals, 68,456 European ancestry individuals, 16,328 South Asian ancestry individuals	4q21.21	FGF5	rs1458038-T	0.2835	1E-9	(South Asians)	0.5935	[0.4-0.79] mmHg increase	Affymetrix, Illumina, Perlegen [~ 2100000] (imputed)	N
1204	chr4	81164722	81164723	rs1458038	21909115	Ehret GB	2011-09-11	Nature	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Systolic blood pressure	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	4q21.21	FGF5	rs1458038-T	0.29	2E-23		0.706	[NR] mmHg increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1204	chr4	81164722	81164723	rs1458038	21909115	Ehret GB	2011-09-11	Nature	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Diastolic blood pressure	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	4q21.21	FGF5	rs1458038-T	0.29	9E-25		0.457	[NR] mmHg increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1204	chr4	81164722	81164723	rs1458038	21909110	Wain LV	2011-09-11	Nat Genet	Genome-wide association study identifies six new loci influencing pulse pressure and mean arterial pressure.	Blood pressure	74,064 European ancestry individuals	48,607 European ancestry individuals	4q21.21	FGF5	rs1458038-T	0.30	3E-14	(Mean Arterial Pressure)	0.403	[0.30-0.51] mmHg increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1204	chr4	81167308	81167309	rs11099097	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	4q21.21		rs11099097-T	NR	4E-15		0.0183	[0.014-0.023] unit decrease	Affymetrix, Illumina [20521447] (imputed)	N
1204	chr4	81167308	81167309	rs11099097	32469254	Matsunaga H	2020-05-29	Circ Genom Precis Med	Transethnic Meta-analysis of Genome-wide Association Studies Identifies Three New Loci and Characterizes Population-specific Differences for Coronary Artery Disease.	Coronary artery disease	15,302 Japanese ancestry cases, 76,014 European and East Asian ancestry cases, 36,140 Japanese ancestry controls, 264,785 European and East Asian ancestry controls	NA	4q21.21	PRDM8, FGF5	rs11099097-T	0.29	4E-9		1.05	[1.04-1.06]	Illumina [5167567] (imputed)	N
1204	chr4	81167308	81167309	rs11099097	32238385	Nakayama A	2020-04-01	Ann Rheum Dis	Subtype-specific gout susceptibility loci and enrichment of selection pressure on ABCG2 and ALDH2 identified by subtype genome-wide meta-analyses of clinically defined gout patients.	Gout (combined type)	905 Japanese ancestry male cases, 4,554 Japanese ancestry male controls	NA	4q21.21	PRDM8, FGF5	rs11099097-C	0.67	3E-7		1.36	[1.21-1.53]	Illumina [7206774] (imputed)	N
1204	chr4	81167308	81167309	rs11099097	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption interaction (2df test)	63,608 European ancestry drinkers, 10,193 African American or Afro-Caribbean heavy drinkers,  2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,494 European ancestry non-drinkers, 11,224 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,002 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,452 Hispanic drinkers, 43,316 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,945 Asian ancestry non-drinkers, 6,925 Hispanic non-drinkers	4q21.21	LOC105377304, FGF5	rs11099097-T	0.28	2E-46	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1204	chr4	81167308	81167309	rs11099097	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption (light vs heavy) interaction (2df test)	12,758 European ancestry heavy drinkers, 1,326 African American or Afro-Caribbean heavy drinkers, 648 Asian ancestry heavy drinkers, 364 Hispanic or Latin American heavy drinkers, 43,947 European ancestry light drinkers, 8,239 African American or Afro-Caribbean light drinkers, 1,141 Asian ancestry light drinkers, 4,448 Hispanic or Latin American light drinkers	42,078 European ancestry heavy drinkers, 217 African American heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic heavy drinkers, 74,706 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	4q21.21	LOC105377304, FGF5	rs11099097-T	0.28	1E-14	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1204	chr4	81167308	81167309	rs11099097	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption (light vs heavy) interaction (2df test)	56,705 European ancestry heavy and light drinkers, 9,725 African American or Afro-Caribbean heavy and light drinkers, 1,789 Asian ancestry heavy and light drinkers, 4,812 Hispanic or Latin American heavy and light drinkers	42,077 European ancestry heavy drinkers, 217 African American heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic ancestry heavy drinkers, 74,701 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	4q21.21	LOC105377304, FGF5	rs11099097-T	0.28	3E-16	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1204	chr4	81167308	81167309	rs11099097	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption (light vs heavy) interaction (2df test)	12,758 European ancestry heavy drinkers, 1,326 African American or Afro-Caribbean heavy drinkers, 648 Asian ancestry heavy drinkers, 364 Hispanic or Latin American heavy drinkers, 43,947 European ancestry light drinkers, 8,239 African American or Afro-Caribbean light drinkers, 1,141 Asian ancestry light drinkers, 4,448 Hispanic or Latin American light drinkers	42,079 European ancestry heavy drinkers, 217 African American or Afro-Caribbean heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic ancestry heavy drinkers, 74,757 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	4q21.21	LOC105377304, FGF5	rs11099097-T	0.28	8E-15	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1204	chr4	81168621	81168622	rs565853247	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Diastolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	4q21.21	intergenic	rs565853247-CTT	0.5939	2E-17		0.2508	[0.19-0.31] mmHg decrease	Affymetrix [NR] (imputed)	N
1204	chr4	81169911	81169912	rs11099098	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	4q21.21		rs11099098-T	0.292735	2E-21		0.023090918	[0.018-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1204	chr4	81169911	81169912	rs11099098	31985003	Boocock J	2020-01-27	Hum Mol Genet	Genomic dissection of 43 serum urate-associated loci provides multiple insights into molecular mechanisms of urate control.	Urate levels	110,238 European ancestry individuals, 21,471 East Asian individuals	NA	4q21.21	FGF5	rs11099098-G		3E-9		0.034	[0.022-0.046] mg/dl increase	NR [NR] (imputed)	N
1204	chr4	81169911	81169912	rs11099098	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Systolic blood pressure	11,380 African American individuals, 21,549 Hispanic/Latino individuals, 1,086 Asian ancestry individuals, 636 Native American ancestry individuals, 782 individuals	NA	4q21.21	NR	rs11099098-?	NR	6E-9		1.069212	[0.71-1.43] unit increase	Illumina [32101933] (imputed)	N
1204	chr4	81169911	81169912	rs11099098	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Diastolic blood pressure	11,380 African American individuals, 21,549 Hispanic/Latino individuals, 1,086 Asian ancestry individuals, 636 Native American ancestry individuals, 782 individuals	NA	4q21.21	NR	rs11099098-?	NR	9E-10		0.7291528	[0.5-0.96] unit increase	Illumina [32101933] (imputed)	N
1204	chr4	81169911	81169912	rs11099098	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	4q21.21	PRDM8-FGF5	rs11099098-T	0.34	4E-27	(Japanese)	0.857	[0.7-1.01] unit increase	Illumina [6200000] (imputed)	N
1204	chr4	81169911	81169912	rs11099098	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Pulse pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 Japanese ancestry individuals	4q21.21	PRDM8, FGF5	rs11099098-T	0.3389	2E-11	(Japanese)	0.367	[0.26-0.47] unit increase	Illumina [6200000] (imputed)	N
1204	chr4	81169911	81169912	rs11099098	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	4q21.21	PRDM8, FGF5	rs11099098-T	0.3389	8E-28	(Japanese)	0.614	[0.5-0.72] unit increase	Illumina [6200000] (imputed)	N
1204	chr4	81169911	81169912	rs11099098	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Hypertension	22,566 Japanese ancestry cases, 28,226 Japanese ancestry controls	8,809 East Asian ancestry cases, 13,663 East Asian ancestry controls, 105,253 European ancestry individuals	4q21.21	PRDM8, FGF5	rs11099098-T	0.3389	2E-21	(Japanese)	0.132	[0.1-0.16] unit increase	Illumina [6200000] (imputed)	N
1204	chr4	81169911	81169912	rs11099098	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	4q21.21	PRDM8-FGF5	rs11099098-T	0.3389	3E-22	(Japanese)	0.4929	[0.39-0.59] unit increase	Illumina [6200000] (imputed)	N
1204	chr4	81169911	81169912	rs11099098	24954895	Simino J	2014-06-19	Am J Hum Genet	Gene-age interactions in blood pressure regulation: a large-scale investigation with the CHARGE, Global BPgen, and ICBP Consortia.	Blood pressure	55,796 European ancestry individuals	43,445 European ancestry individuals, 1,849 Chinese ancestry individuals, 2,502 Malay ancestry individuals, 2,476 Asian Indian ancestry individuals, 1,855 Asian ancestry individuals	4q21.21	FGF5, PRDM8	rs11099098-T		9E-8	(EA, PP, Age 50-59)	0.52	[0.32-0.72] mmHg increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1204	chr4	81169911	81169912	rs11099098	24954895	Simino J	2014-06-19	Am J Hum Genet	Gene-age interactions in blood pressure regulation: a large-scale investigation with the CHARGE, Global BPgen, and ICBP Consortia.	Blood pressure	55,796 European ancestry individuals	43,445 European ancestry individuals, 1,849 Chinese ancestry individuals, 2,502 Malay ancestry individuals, 2,476 Asian Indian ancestry individuals, 1,855 Asian ancestry individuals	4q21.21	FGF5, PRDM8	rs11099098-T		2E-11	(EA, SBP, Age 50-59)	0.97	[0.7-1.24] mmHg increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1204	chr4	81169911	81169912	rs11099098	23263486	Kottgen A	2012-12-23	Nat Genet	Genome-wide association analyses identify 18 new loci associated with serum urate concentrations.	Urate levels	49,825 European ancestry males, 60,522 European ancestry females	Up to 32,813 European ancestry individuals	4q21.21	FGF5	rs11099098-T	0.29	7E-7		0.029	[0.017-0.041] mg/dl decrease	Affymetrix, Illumina, Perlegen [2450547] (imputed)	N
1204	chr4	81170179	81170180	rs72658323	34118634	Chu X	2021-05-27	J Psychiatr Res	Maternal smoking during pregnancy and risks to depression and anxiety in offspring: An observational study and genome-wide gene-environment interaction analysis in UK biobank cohort.	Anxiety x maternal smoking during pregnancy interaction	5,584 cases, 9,801 controls	NA	4q21.21	NR	rs72658323-?	NR	2E-7	(Additive model)			Affymetrix [NR] (imputed)	N
1204	chr4	81174591	81174592	rs13125101	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	4q21.21		rs13125101-A	0.292705	2E-25		0.02534718	[0.021-0.03] unit increase	Affymetrix [93095623] (imputed)	N
1204	chr4	81174591	81174592	rs13125101	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q21.21	NR	rs13125101-A	0.298049	2E-31				Affymetrix, Illumina [24653286] (imputed)	N
1204	chr4	81174591	81174592	rs13125101	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	4q21.21	NR	rs13125101-A	0.293239	6E-32		0.023799	[0.02-0.028] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
1204	chr4	81174591	81174592	rs13125101	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q21.21	NR	rs13125101-A	0.296756	3E-32				Affymetrix, Illumina [24558453] (imputed)	N
1204	chr4	81174591	81174592	rs13125101	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Systolic blood pressure	11,380 African American individuals, 21,549 Hispanic/Latino individuals, 1,086 Asian ancestry individuals, 636 Native American ancestry individuals, 782 individuals	NA	4q21.21	NR	rs13125101-?	NR	4E-9		1.060079	[0.71-1.41] unit increase	Illumina [32101933] (imputed)	N
1204	chr4	81174591	81174592	rs13125101	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Diastolic blood pressure	11,380 African American individuals, 21,549 Hispanic/Latino individuals, 1,086 Asian ancestry individuals, 636 Native American ancestry individuals, 782 individuals	NA	4q21.21	NR	rs13125101-?	NR	8E-10		0.7185864	[0.49-0.95] unit increase	Illumina [32101933] (imputed)	N
1204	chr4	81174591	81174592	rs13125101	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls	NA	4q21.21	FGF5	rs13125101-A	0.288018	2E-26		0.097112074	[0.079-0.115] unit increase	Affymetrix [7288503] (imputed)	N
1204	chr4	81174591	81174592	rs13125101	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	4q21.21	FGF5	rs13125101-A	0.2921	4E-70		0.11778578	[0.1-0.13] unit increase	Affymetrix [7288503] (imputed)	N
1204	chr4	81174591	81174592	rs13125101	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls	NA	4q21.21	FGF5	rs13125101-A	0.292467	2E-9		0.03686969	[0.025-0.049] unit increase	Affymetrix [7288503] (imputed)	N
1204	chr4	81174591	81174592	rs13125101	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	4q21.21		rs13125101-?	NR	3E-114				NR [~ 8900000] (imputed)	N
1204	chr4	81174591	81174592	rs13125101	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	4q21.21		rs13125101-?	NR	2E-25				NR [~ 8900000] (imputed)	N
1204	chr4	81174591	81174592	rs13125101	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	4q21.21		rs13125101-?	NR	1E-80				NR [~ 8900000] (imputed)	N
1204	chr4	81174591	81174592	rs13125101	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption interaction (2df test)	91,110 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	237,996 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,315 European ancestry non-drinkers, 2,761 African ancestry non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	4q21.21	LOC105377304, FGF5	rs13125101-A	0.31	1E-33	(Asian, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1204	chr4	81179989	81179990	rs36077257	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Diastolic blood pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	4q21.21	FGF5	rs36077257-T	0.025452528	1E-7		0.4886	[0.31-0.67] unit increase	Affymetrix [~ 9800000] (imputed)	N
1204	chr4	81181071	81181072	rs10857147	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	4q21.21		rs10857147-T	NR	3E-11		0.0143	[0.01-0.018] unit decrease	Affymetrix, Illumina [20536134] (imputed)	N
1204	chr4	81181071	81181072	rs10857147	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	145,505 East Asian ancestry individuals	NA	4q21.21		rs10857147-T	0.297126	2E-31		0.0426388	[0.035-0.05] unit increase	Illumina [13477770] (imputed)	N
1204	chr4	81181071	81181072	rs10857147	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	4q21.21		rs10857147-T	NR	6E-21		0.0182	[0.014-0.022] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
1204	chr4	81181071	81181072	rs10857147	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	129,405 East Asian ancestry individuals	NA	4q21.21		rs10857147-T	0.297381	5E-14		0.0287361	[0.021-0.036] unit decrease	Illumina [13475706] (imputed)	N
1204	chr4	81181071	81181072	rs10857147	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	4q21.21		rs10857147-T	NR	2E-26		0.0188	[0.015-0.022] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
1204	chr4	81181071	81181072	rs10857147	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	150,266 East Asian ancestry individuals	NA	4q21.21		rs10857147-T	0.297726	4E-17		0.0262306	[0.02-0.032] unit decrease	Illumina [13478778] (imputed)	N
1204	chr4	81181071	81181072	rs10857147	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	4q21.21		rs10857147-T	NR	9E-24		0.0189	[0.015-0.023] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
1204	chr4	81181071	81181072	rs10857147	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	4q21.21		rs10857147-T	NR	1E-33		0.024	[0.02-0.028] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
1204	chr4	81181071	81181072	rs10857147	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls, 20,367 East Asian ancestry cases, 158,359 East Asian ancestry controls	NA	4q21.21		rs10857147-T	NR	5E-31		0.0844	[0.07-0.099] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1204	chr4	81181071	81181072	rs10857147	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antithrombotic agents)	54,220 East Asian ancestry cases, 124,506 East Asian ancestry controls	NA	4q21.21		rs10857147-T	0.297054578	3E-8		0.047835495	[0.031-0.065] unit increase	Illumina [13429980] (imputed)	N
1204	chr4	81181071	81181072	rs10857147	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls, 33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	4q21.21		rs10857147-T	NR	7E-10		0.0326	[0.022-0.043] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1204	chr4	81181071	81181072	rs10857147	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	4q21.21		rs10857147-T	NR	2E-74		0.0382	[0.034-0.042] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
1204	chr4	81181071	81181072	rs10857147	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	145,502 East Asian ancestry individuals	NA	4q21.21		rs10857147-T	0.297115	8E-32		0.0440383	[0.037-0.051] unit increase	Illumina [13477767] (imputed)	N
1204	chr4	81181071	81181072	rs10857147	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	4q21.21		rs10857147-T	NR	9E-16		0.0143	[0.011-0.018] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
1204	chr4	81181071	81181072	rs10857147	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	4q21.21		rs10857147-T	NR	1E-15		0.0145	[0.011-0.018] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
1204	chr4	81181071	81181072	rs10857147	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	145,515 East Asian ancestry individuals	NA	4q21.21		rs10857147-T	0.297119	2E-25		0.0397968	[0.032-0.047] unit increase	Illumina [13477770] (imputed)	N
1204	chr4	81181071	81181072	rs10857147	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	4q21.21		rs10857147-T	NR	3E-9		0.0124	[0.0083-0.0165] unit decrease	Affymetrix, Illumina [20538307] (imputed)	N
1204	chr4	81181071	81181072	rs10857147	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	148,767 East Asian ancestry individuals	NA	4q21.21		rs10857147-T	0.297877	6E-10		0.0228241	[0.016-0.03] unit decrease	Illumina [13478792] (imputed)	N
1204	chr4	81181071	81181072	rs10857147	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	4q21.21	FGF5	rs10857147-T	0.270595	2E-10		1.06	[1.04-1.07]	NR [8126035] (imputed)	N
1204	chr4	81181071	81181072	rs10857147	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	4q21.21		rs10857147-T	0.290839	3E-20		0.02255579	[0.018-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1204	chr4	81181071	81181072	rs10857147	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	4q21.21	FGF5	rs10857147-A	0.712	2E-15		0.0283	[0.021-0.035] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1204	chr4	81181071	81181072	rs10857147	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	4q21.21	FGF5	rs10857147-A	0.6924	1E-8	(East Asian)	0.0382	[0.025-0.051] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1204	chr4	81181071	81181072	rs10857147	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	4q21.21	FGF5	rs10857147-A	0.713	2E-8		0.024332	[0.016-0.033] mg/dL increase	Affymetrix, Illumina [8217339] (imputed)	N
1204	chr4	81181071	81181072	rs10857147	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	4q21.21	NR	rs10857147-A	0.2933	2E-6	(men)	0.0272	[0.016-0.038] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1204	chr4	81181071	81181072	rs10857147	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	4q21.21	NR	rs10857147-A	0.2914	2E-10	(women)	0.0326	[0.023-0.043] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1204	chr4	81181071	81181072	rs10857147	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	4q21.21	FGF5	rs10857147-A	0.7094	7E-16	(EA)	0.0032	[0.0024-0.004] unit decrease	Affymetrix [NR] (imputed)	N
1204	chr4	81181071	81181072	rs10857147	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls	NA	4q21.21	FGF5	rs10857147-T	0.286176	1E-32		0.104208015	[0.087-0.121] unit increase	Affymetrix [7288503] (imputed)	N
1204	chr4	81181071	81181072	rs10857147	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls	NA	4q21.21	FGF5	rs10857147-T	0.286785	7E-37		0.113139436	[0.096-0.131] unit increase	Affymetrix [7288503] (imputed)	N
1204	chr4	81181071	81181072	rs10857147	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals	at least 101,293 European ancestry individuals	4q21.21	PRDM8, FGF5	rs10857147-A	0.699	1E-11	(Japanese)	0.032	[0.022-0.042] unit increase	Illumina [5864938] (imputed)	N
1204	chr4	81181071	81181072	rs10857147	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	4q21.21	FGF5	rs10857147-T	0.7239	3E-64		0.6298	[0.56-0.7] mmHg decrease	Affymetrix [NR] (imputed)	N
1204	chr4	81181071	81181072	rs10857147	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	4q21.21	FGF5	rs10857147-T	0.7235	2E-14		0.2136	[0.16-0.27] mmHg decrease	Affymetrix [NR] (imputed)	N
1204	chr4	81181071	81181072	rs10857147	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	4q21.21	PRDM8-FGF5	rs10857147-A	0.7	9E-32	(Japanese)	1.0317	[0.86-1.2] unit decrease	Illumina [6200000] (imputed)	N
1204	chr4	81181071	81181072	rs10857147	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Pulse pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 Japanese ancestry individuals	4q21.21	PRDM8, FGF5	rs10857147-A	0.6987	5E-13	(Japanese)	0.4391	[0.32-0.56] unit decrease	Illumina [6200000] (imputed)	N
1204	chr4	81181071	81181072	rs10857147	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	4q21.21	PRDM8, FGF5	rs10857147-A	0.6987	8E-33	(Japanese)	0.7414	[0.62-0.86] unit decrease	Illumina [6200000] (imputed)	N
1204	chr4	81181071	81181072	rs10857147	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Hypertension	22,566 Japanese ancestry cases, 28,226 Japanese ancestry controls	8,809 East Asian ancestry cases, 13,663 East Asian ancestry controls, 105,253 European ancestry individuals	4q21.21	PRDM8, FGF5	rs10857147-A	0.6987	2E-23	(Japanese)	0.1584	[0.13-0.19] unit decrease	Illumina [6200000] (imputed)	N
1204	chr4	81181071	81181072	rs10857147	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	4q21.21	PRDM8-FGF5	rs10857147-A	0.6987	2E-26	(Japanese)	0.5962	[0.49-0.71] unit decrease	Illumina [6200000] (imputed)	N
1204	chr4	81181071	81181072	rs10857147	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Systolic blood pressure	136,597 Japanese ancestry individuals	NA	4q21.21	PRDM8, FGF5	rs10857147-?	NR	1E-25		0.04658	[0.038-0.055] unit increase	Illumina [6108953] (imputed)	N
1204	chr4	81181071	81181072	rs10857147	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum uric acid levels	109,029 Japanese ancestry individuals	NA	4q21.21	PRDM8, FGF5	rs10857147-?	NR	3E-10		0.03117	[0.021-0.041] unit decrease novel	Illumina [6108953] (imputed)	N
1204	chr4	81181071	81181072	rs10857147	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Pulse pressure	136,249 Japanese ancestry individuals	NA	4q21.21	PRDM8, FGF5	rs10857147-?	NR	7E-10		0.02734	[0.019-0.036] unit increase	Illumina [6108953] (imputed)	N
1204	chr4	81181071	81181072	rs10857147	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean arterial pressure	136,482 Japanese ancestry individuals	NA	4q21.21	PRDM8, FGF5	rs10857147-?	NR	2E-27		0.04877	[0.04-0.058] unit increase novel	Illumina [6108953] (imputed)	N
1204	chr4	81181071	81181072	rs10857147	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Diastolic blood pressure	136,615 Japanese ancestry individuals	NA	4q21.21	PRDM8, FGF5	rs10857147-?	NR	2E-22		0.04337	[0.035-0.052] unit increase	Illumina [6108953] (imputed)	N
1204	chr4	81181071	81181072	rs10857147	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Creatinine levels	142,097 Japanese ancestry individuals	NA	4q21.21	PRDM8, FGF5	rs10857147-?	NR	2E-16		0.03533	[0.027-0.044] unit decrease novel	Illumina [6108953] (imputed)	N
1204	chr4	81181071	81181072	rs10857147	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	4q21.21	FGF5	rs10857147-A	0.7208	1E-14		0.0491	[0.037-0.062] unit decrease	Affymetrix [at least 7947838] (imputed)	N
1204	chr4	81181071	81181072	rs10857147	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	4q21.21	FGF5	rs10857147-A	0.7222	1E-14		0.0553	[0.041-0.069] unit decrease	NR [8041861] (imputed)	N
1204	chr4	81181071	81181072	rs10857147	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	4q21.21	FGF5	rs10857147-A	0.722	1E-14		0.055	[0.041-0.069] unit decrease	Affymetrix [7947838] (imputed)	N
1204	chr4	81181071	81181072	rs10857147	28714975	Nelson CP	2017-07-17	Nat Genet	Association analyses based on false discovery rate implicate new loci for coronary artery disease.	Coronary artery disease (myocardial infarction, percutaneous transluminal coronary angioplasty, coronary artery bypass grafting, angina or chromic ischemic heart disease)	18,467 European and unknown ancestry cases, 45,264 European and unknown ancestry controls	57,347 European and unknown ancestry cases, 219,521 European and unknown ancestry controls	4q21.21	PRDM8, FGF5	rs10857147-T	0.269	6E-9		1.054	[1.036-1.073]	Affymetrix [9149595] (imputed)	N
1204	chr4	81181071	81181072	rs10857147	28714974	Klarin D	2017-07-17	Nat Genet	Genetic analysis in UK Biobank links insulin resistance and transendothelial migration pathways to coronary artery disease.	Coronary artery disease	4,831 European ancestry cases, 115,455 European ancestry controls	up to 60,801 European and unknown ancestry cases, up to 123,504 European and unknown ancestry controls	4q21.21	FGF5	rs10857147-T	0.29	3E-8		1.06	[1.04-1.08]	Affymetrix [9061845] (imputed)	N
1204	chr4	81181071	81181072	rs10857147	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	4q21.21	intergenic	rs10857147-T	0.2905	1E-10		0.02512283	[0.017-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
1204	chr4	81182553	81182554	rs12509595	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	4q21.21		rs12509595-C	NR	6E-75		0.0374	[0.033-0.041] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1204	chr4	81182553	81182554	rs12509595	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	145,445 East Asian ancestry individuals	NA	4q21.21		rs12509595-C	0.298874	2E-12		0.0259344	[0.019-0.033] unit increase	Illumina [13477769] (imputed)	N
1204	chr4	81182553	81182554	rs12509595	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls, 22,356 East Asian ancestry cases, 156,370 East Asian ancestry controls	NA	4q21.21		rs12509595-C	NR	1E-24		0.0712	[0.058-0.085] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1204	chr4	81182553	81182554	rs12509595	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	4q21.21		rs12509595-C	0.298793311	1E-11		0.060395896	[0.043-0.078] unit increase	Illumina [13134967] (imputed)	N
1204	chr4	81182553	81182554	rs12509595	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls, 49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	4q21.21		rs12509595-C	NR	1E-42		0.086	[0.074-0.098] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1204	chr4	81182553	81182554	rs12509595	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antithrombotic agents)	67,653 European ancestry cases, 85,986 European ancestry controls, 54,220 East Asian ancestry cases, 124,506 East Asian ancestry controls	NA	4q21.21		rs12509595-C	NR	8E-9		0.0324	[0.021-0.043] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1204	chr4	81182553	81182554	rs12509595	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	4q21.21		rs12509595-C	NR	2E-74		0.0975	[0.087-0.108] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1204	chr4	81182553	81182554	rs12509595	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	4q21.21		rs12509595-C	0.298793311	9E-12		0.06164697	[0.044-0.079] unit increase	Illumina [13134967] (imputed)	N
1204	chr4	81182553	81182554	rs12509595	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Ischemic stroke	22,664 East Asian ancestry cases, 152,022 East Asian ancestry controls	NA	4q21.21		rs12509595-C	0.296733251	1E-8		0.06623719	[0.043-0.089] unit increase	Illumina [13429439] (imputed)	N
1204	chr4	81182553	81182554	rs12509595	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Ischemic stroke	11,929 European ancestry cases, 472,192 European ancestry controls, 22,664 East Asian ancestry cases, 152,022 East Asian ancestry controls	NA	4q21.21		rs12509595-C	NR	3E-10		0.0577	[0.04-0.076] unit increase	Affymetrix, Illumina [25844498] (imputed)	N
1204	chr4	81182553	81182554	rs12509595	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q21.21	NR	rs12509595-C	0.290519	5E-45				Affymetrix, Illumina [24332387] (imputed)	N
1204	chr4	81182553	81182554	rs12509595	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	4q21.21	FGF5	rs12509595-T	0.7	2E-20		0.0035	[0.0029-0.0041] unit decrease	Affymetrix [NR] (imputed)	N
1204	chr4	81182553	81182554	rs12509595	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	4q21.21	FGF5	rs12509595-T	0.7001	2E-37		0.0035	[0.0029-0.0041] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
1204	chr4	81182553	81182554	rs12509595	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	165,726 East Asian ancestry individuals	NA	4q21.21	FGF5	rs12509595-T	0.68	9E-9		0.0042	[0.0028-0.0056] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
1204	chr4	81182553	81182554	rs12509595	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Chronic kidney disease	64,164 European and unknown ancestry cases, 561,055 European and unknown ancestry controls	NA	4q21.21	FGF5	rs12509595-T	0.70	5E-14		1.0692	[1.0508-1.0881]	Affymetrix, Illumina [9585923] (imputed)	N
1204	chr4	81182553	81182554	rs12509595	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	4q21.21	FGF5	rs12509595-T	0.7028	3E-10		0.005	[0.0034-0.0066] unit increase	Affymetrix, Illumina [8176554] (imputed)	N
1204	chr4	81182553	81182554	rs12509595	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	4q21.21	FGF5	rs12509595-C	0.2921	1E-13		7.405	NR z score increase	Illumina [26237160] (imputed)	N
1204	chr4	81182553	81182554	rs12509595	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	4q21.21	PRDM8, FGF5	rs12509595-T	0.721	5E-16		0.398	[0.19-0.6] ml/min/1.73m2 decrease	Affymetrix, Illumina [at least 5248638] (imputed)	N
1204	chr4	81182553	81182554	rs12509595	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Pulse pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 Japanese ancestry individuals	4q21.21	NR	rs12509595-T	0.6993	9E-15	(East Asian)	0.3625	[0.27-0.45] unit decrease	Illumina [6200000] (imputed)	N
1204	chr4	81182553	81182554	rs12509595	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption interaction (2df test)	63,608 European ancestry drinkers, 10,193 African American or Afro-Caribbean heavy drinkers,  2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,494 European ancestry non-drinkers, 11,224 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,002 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,452 Hispanic drinkers, 43,316 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,945 Asian ancestry non-drinkers, 6,925 Hispanic non-drinkers	4q21.21	FGF5	rs12509595-T	0.7	2E-73	(Asian, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1204	chr4	81182553	81182554	rs12509595	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption interaction (2df test)	91,110 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	237,996 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,315 European ancestry non-drinkers, 2,761 African ancestry non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	4q21.21	FGF5	rs12509595-T	0.71	6E-11	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1204	chr4	81182553	81182554	rs12509595	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption interaction (2df test)	63,607 European ancestry drinkers, 10,193 African American or Afro-Caribbean drinkers, 2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,492 European ancestry non-drinkers, 11,223 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,058 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	4q21.21	FGF5	rs12509595-T	0.7	3E-65	(Asian, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1204	chr4	81182553	81182554	rs12509595	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Red blood cell count	108,794 Japanese ancestry individuals	NA	4q21.21	PRDM8, FGF5	rs12509595-?	NR	2E-8		0.02663	[0.017-0.036] unit increase novel	Illumina [6108953] (imputed)	N
1204	chr4	81182553	81182554	rs12509595	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Potassium levels	132,938 Japanese ancestry individuals	NA	4q21.21	PRDM8, FGF5	rs12509595-?	NR	1E-21		0.04125	[0.033-0.05] unit decrease novel	Illumina [6108953] (imputed)	N
1204	chr4	81182553	81182554	rs12509595	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Glomerular filtration rate	143,658 Japanese ancestry individuals	NA	4q21.21	PRDM8, FGF5	rs12509595-?	NR	2E-14		0.03192	[0.024-0.04] unit increase novel	Illumina [6108953] (imputed)	N
1204	chr4	81182553	81182554	rs12509595	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Blood urea nitrogen levels	139,818 Japanese ancestry individuals	NA	4q21.21	PRDM8, FGF5	rs12509595-?	NR	2E-8		0.02227	[0.015-0.03] unit decrease novel	Illumina [6108953] (imputed)	N
1204	chr4	81182553	81182554	rs12509595	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	4q21.21	intergenic	rs12509595-C	0.2917	2E-9		0.02326836	[0.016-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
1204	chr4	81182553	81182554	rs12509595	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	4q21.21	NR	rs12509595-T		9E-13	(EA)	0.469	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1204	chr4	81182553	81182554	rs12509595	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	4q21.21	NR	rs12509595-T		2E-19		0.54	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1204	chr4	81182553	81182554	rs12509595	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	4q21.21	NR	rs12509595-T		9E-55		0.657	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1204	chr4	81182553	81182554	rs12509595	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	4q21.21	NR	rs12509595-T		3E-16		0.23	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1204	chr4	81182553	81182554	rs12509595	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	4q21.21	NR	rs12509595-T		4E-24		0.394	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1204	chr4	81182553	81182554	rs12509595	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	4q21.21	NR	rs12509595-T		2E-17	(EA)	0.363	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1204	chr4	81182553	81182554	rs12509595	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	4q21.21	NR	rs12509595-T		2E-61		0.427	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1204	chr4	81184340	81184341	rs16998073	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Stable angina pectoris	17,894 European ancestry cases, 325,132 European ancestry controls, 18,833 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	4q21.21		rs16998073-T	NR	5E-9		0.053	[0.035-0.071] unit increase	Affymetrix, Illumina [20456336] (imputed)	N
1204	chr4	81184340	81184341	rs16998073	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	153,512 East Asian ancestry individuals	NA	4q21.21		rs16998073-T	0.300333	1E-9		0.0207252	[0.014-0.027] unit increase	Illumina [13479135] (imputed)	N
1204	chr4	81184340	81184341	rs16998073	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	20,917 European ancestry cases, 440,906 European ancestry controls, 14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	4q21.21		rs16998073-T	NR	2E-12		0.0662	[0.048-0.085] unit increase	Affymetrix, Illumina [25841367] (imputed)	N
1204	chr4	81184340	81184341	rs16998073	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	4q21.21		rs16998073-T	NR	9E-60		0.035	[0.031-0.039] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1204	chr4	81184340	81184341	rs16998073	34026292	Juang JJ	2020-12-07	J Adv Res	Rare variants discovery by extensive whole-genome sequencing of the Han Chinese population in Taiwan: Applications to cardiovascular medicine.	Hypertension	2,936 Han Chinese ancestry cases, 7,742 Han Chinese ancestry controls	NA	4q21.21		rs16998073-?	NR	2E-10		1.273		NR [577656]	N
1204	chr4	81184340	81184341	rs16998073	33893285	Guindo-Martinez M	2021-04-23	Nat Commun	The impact of non-additive genetic associations on age-related complex diseases.	Hypertension	28,391 European ancestry cases, 28,246 European ancestry controls	NA	4q21.21		rs16998073-T	0.2904707	3E-9		1.09		Affymetrix [15650645] (imputed)	N
1204	chr4	81184340	81184341	rs16998073	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	4q21.21	PRDM8, FGF5	rs16998073-?	NR	6E-19		0.0474688	[0.037-0.058] unit increase	Illumina [4804024] (imputed)	N
1204	chr4	81184340	81184341	rs16998073	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	4q21.21	NR	rs16998073-T	0.292449	5E-39		0.026576	[0.023-0.031] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
1204	chr4	81184340	81184341	rs16998073	32709000	Jeong H	2020-07-17	Nutrients	Identifying Interactions between Dietary Sodium, Potassium, Sodium-Potassium Ratios, and FGF5 rs16998073 Variants and Their Associated Risk for Hypertension in Korean Adults.	Hypertension	8,178 Korean ancestry cases, 9,558 Korean ancestry controls	NA	4q21.21	FGF5	rs16998073-T	0.47	8E-25		1.29	[1.23-1.35]	Affymetrix [NR]	N
1204	chr4	81184340	81184341	rs16998073	32641083	Hillary RF	2020-07-08	Genome Med	Multi-method genome- and epigenome-wide studies of inflammatory protein levels in healthy older adults.	Fibroblast growth factor 5 levels	982 Scottish ancestry individuals	NA	4q21.21	NR	rs16998073-T	0.29815	6E-22		0.49947	[0.4-0.6] unit increase	Illumina [7903493] (imputed)	N
1204	chr4	81184340	81184341	rs16998073	31879980	German CA	2019-12-26	Genet Epidemiol	Ordered multinomial regression for genetic association analysis of ordinal phenotypes at Biobank scale.	Hypertension	30,822 British ancestry normal blood pressure individuals, 25,242 British ancestry elevated blood pressure individuals, 50,461 British ancestry stage 1 hypertension individuals, 75,286 British ancestry stage 2 hypertension individuals, 3,754 British ancestry hypertension crisis individuals	NA	4q21.21	NR	rs16998073-?	NR	2E-30		0.0773208	NR unit decrease	Affymetrix [464137]	N
1204	chr4	81184340	81184341	rs16998073	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in non-diabetics	152,624 European ancestry individuals, 36,369 African American individuals	NA	4q21.21	FGF5	rs16998073-A	0.726	7E-10		0.358	[0.24-0.47] unit decrease	Affymetrix [NR] (imputed)	N
1204	chr4	81184340	81184341	rs16998073	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Systolic blood pressure	11,380 African American individuals, 21,549 Hispanic/Latino individuals, 1,086 Asian ancestry individuals, 636 Native American ancestry individuals, 782 individuals	NA	4q21.21	NR	rs16998073-?	NR	1E-8		1.000993	[0.66-1.34] unit increase	Illumina [32101933] (imputed)	N
1204	chr4	81184340	81184341	rs16998073	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Diastolic blood pressure	11,380 African American individuals, 21,549 Hispanic/Latino individuals, 1,086 Asian ancestry individuals, 636 Native American ancestry individuals, 782 individuals	NA	4q21.21	NR	rs16998073-?	NR	5E-10		0.7073344	[0.48-0.93] unit increase	Illumina [32101933] (imputed)	N
1204	chr4	81184340	81184341	rs16998073	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals, at least 88,461 European ancestry individuals	NA	4q21.21	PRDM8, FGF5	rs16998073-A	0.808	5E-6	(EA)	0.025	[0.014-0.036] unit increase	Illumina [1986983] (imputed)	N
1204	chr4	81184340	81184341	rs16998073	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	4q21.21	NR	rs16998073-A	0.6993	6E-41	(East Asian)	0.925	[0.79-1.06] unit decrease	Illumina [6200000] (imputed)	N
1204	chr4	81184340	81184341	rs16998073	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Pulse pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 Japanese ancestry individuals	4q21.21	PRDM8, FGF5	rs16998073-A	0.6993	2E-12	(Japanese)	0.4057	[0.29-0.52] unit decrease	Illumina [6200000] (imputed)	N
1204	chr4	81184340	81184341	rs16998073	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	4q21.21	PRDM8, FGF5	rs16998073-A	0.6993	1E-44	(East Asian)	0.6823	[0.59-0.78] unit decrease	Illumina [6200000] (imputed)	N
1204	chr4	81184340	81184341	rs16998073	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Hypertension	22,566 Japanese ancestry cases, 28,226 Japanese ancestry controls	8,809 East Asian ancestry cases, 13,663 East Asian ancestry controls, 105,253 European ancestry individuals	4q21.21	PRDM8, FGF5	rs16998073-A	0.6991	3E-29	(East Asian)	0.1444	[0.12-0.17] unit decrease	Illumina [6200000] (imputed)	N
1204	chr4	81184340	81184341	rs16998073	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	4q21.21	PRDM8-FGF5	rs16998073-A	0.6993	3E-38	(East Asian)	0.5654	[0.48-0.65] unit decrease	Illumina [6200000] (imputed)	N
1204	chr4	81184340	81184341	rs16998073	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption (light vs heavy) interaction (2df test)	12,758 European ancestry heavy drinkers, 1,326 African American or Afro-Caribbean heavy drinkers, 648 Asian ancestry heavy drinkers, 364 Hispanic or Latin American heavy drinkers, 43,947 European ancestry light drinkers, 8,239 African American or Afro-Caribbean light drinkers, 1,141 Asian ancestry light drinkers, 4,448 Hispanic or Latin American light drinkers	42,078 European ancestry heavy drinkers, 217 African American heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic heavy drinkers, 74,706 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	4q21.21	FGF5	rs16998073-A	0.71	5E-13	(AA, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1204	chr4	81184340	81184341	rs16998073	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption (light vs heavy) interaction (2df test)	56,705 European ancestry heavy and light drinkers, 9,725 African American or Afro-Caribbean heavy and light drinkers, 1,789 Asian ancestry heavy and light drinkers, 4,812 Hispanic or Latin American heavy and light drinkers	42,077 European ancestry heavy drinkers, 217 African American heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic ancestry heavy drinkers, 74,701 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	4q21.21	FGF5	rs16998073-A	0.71	3E-15	(AA, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1204	chr4	81184340	81184341	rs16998073	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption (light vs heavy) interaction (2df test)	12,758 European ancestry heavy drinkers, 1,326 African American or Afro-Caribbean heavy drinkers, 648 Asian ancestry heavy drinkers, 364 Hispanic or Latin American heavy drinkers, 43,947 European ancestry light drinkers, 8,239 African American or Afro-Caribbean light drinkers, 1,141 Asian ancestry light drinkers, 4,448 Hispanic or Latin American light drinkers	42,079 European ancestry heavy drinkers, 217 African American or Afro-Caribbean heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic ancestry heavy drinkers, 74,757 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	4q21.21	FGF5	rs16998073-A	0.71	2E-14	(AA, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1204	chr4	81184340	81184341	rs16998073	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	4q21.21	PRDM8, FGF5	rs16998073-A		4E-19		0.535	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1204	chr4	81184340	81184341	rs16998073	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	4q21.21	PRDM8, FGF5	rs16998073-A		1E-12	(EA)	0.471	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1204	chr4	81184340	81184341	rs16998073	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	4q21.21	PRDM8, FGF5	rs16998073-A		2E-53		0.66	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1204	chr4	81184340	81184341	rs16998073	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	4q21.21	PRDM8, FGF5	rs16998073-A		1E-15		0.23	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1204	chr4	81184340	81184341	rs16998073	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	4q21.21	PRDM8, FGF5	rs16998073-A		9E-24		0.392	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1204	chr4	81184340	81184341	rs16998073	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	4q21.21	PRDM8, FGF5	rs16998073-A		2E-17	(EA)	0.364	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1204	chr4	81184340	81184341	rs16998073	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	4q21.21	PRDM8, FGF5	rs16998073-A		1E-59		0.426	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1204	chr4	81184340	81184341	rs16998073	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Mean arterial pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	NA	4q21.21	intergenic	rs16998073-T	0.263443451851534	9E-16		0.41678172	[0.32-0.52] unit increase	Illumina [247039]	N
1204	chr4	81184340	81184341	rs16998073	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Diastolic blood pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	4q21.21	FGF5	rs16998073-A	0.6896	3E-23		0.0359	unit decrease	Illumina [242296]	N
1204	chr4	81184340	81184341	rs16998073	19430483	Newton-Cheh C	2009-05-10	Nat Genet	Genome-wide association study identifies eight loci associated with blood pressure.	Diastolic blood pressure	34,433 European ancestry individuals	Up to 100,347 European ancestry individuals, up to 12,889 Indian Asian ancestry individuals	4q21.21	FGF5, PRDM8, c4orf22	rs16998073-T	0.21	1E-21		0.5	[0.40-0.60] mm Hg increase	Affymetrix, Illumina [2497993] (imputed)	N
1204	chr4	81191520	81191520	rs11437847	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	4q21.21	FGF5	rs11437847-CTT		1E-10		0.017	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
1204	chr4	81192257	81192258	rs3796604	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	4q21.21		rs3796604-?	NR	1E-49				NR [~ 8900000] (imputed)	N
1204	chr4	81194089	81194090	rs3796606	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Monobrow	69,284 European ancestry individuals	NA	4q21.21	FGF5	rs3796606-?	NR	6E-10		0.023	[0.016-0.030] unit increase	Illumina [12039491] (imputed)	N
1204	chr4	81197948	81197949	rs7680591	29146897	Pirastu N	2017-11-17	Nat Commun	GWAS for male-pattern baldness identifies 71 susceptibility loci explaining 38% of the risk.	Male-pattern baldness	25,662 British ancestry cases, 17,928 British ancestry controls	13,367 European ancestry cases, 11,851 European ancestry controls, 3,436 cases, 2,435 controls	4q21.21	FGF5, PRDM8	rs7680591-T	NR	5E-25		0.147336	[0.12-0.18] unit increase	Affymetrix [27512692] (imputed)	N
1204	chr4	81197948	81197949	rs7680591	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		4q21.21	FGF5	rs7680591-A	NR	1E-26		0.0668975	NR unit increase	NR [NR] (imputed)	N
1204	chr4	81199370	81199371	rs72658365	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	4q21.21	NR	rs72658365-C	0.0852259	1E-34		0.0730934	[0.061-0.085] unit increase	NR [19129689] (imputed)	N
1204	chr4	81199965	81199966	rs1458046	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	4q21.21		rs1458046-?	NR	8E-30				NR [~ 8900000] (imputed)	N
1204	chr4	81199965	81199966	rs1458046	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	4q21.21	FGF5	rs1458046-A	0.4044	8E-19		1.072	NR	Affymetrix [9154080] (imputed)	N
1204	chr4	81202047	81202048	rs36034102	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Angina pectoris	30,025 European ancestry cases, 440,906 European ancestry controls, 14,007 East Asian ancestry cases, 145,158 East Asian ancestry controls	NA	4q21.21		rs36034102-T	NR	1E-8		0.0523	[0.034-0.07] unit increase	Affymetrix, Illumina [25842036] (imputed)	N
1204	chr4	81202047	81202048	rs36034102	32709000	Jeong H	2020-07-17	Nutrients	Identifying Interactions between Dietary Sodium, Potassium, Sodium-Potassium Ratios, and FGF5 rs16998073 Variants and Their Associated Risk for Hypertension in Korean Adults.	Hypertension	8,178 Korean ancestry cases, 9,558 Korean ancestry controls	NA	4q21.21	FGF5	rs36034102-T	0.35	3E-12		1.22	[1.15-1.29]	Affymetrix [NR]	N
1204	chr4	81202047	81202048	rs36034102	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	4q21.21	FGF5	rs36034102-T	0.27	4E-9		0.43	[0.29-0.57] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1204	chr4	81202047	81202048	rs36034102	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	4q21.21	FGF5	rs36034102-T	0.2688	5E-9		0.4428	[0.29-0.59] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1204	chr4	81205032	81205033	rs17004869	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	4q21.21		rs17004869-T	0.109236	5E-8		0.0333365	[0.021-0.045] unit decrease	Illumina [13476266] (imputed)	N
1204	chr4	81205032	81205033	rs17004869	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	4q21.21	FGF5	rs17004869-A	0.87	8E-13	(Japanese)	0.9834	[0.71-1.25] unit decrease	Illumina [6200000] (imputed)	N
1204	chr4	81205032	81205033	rs17004869	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	4q21.21	FGF5	rs17004869-A	0.8721	1E-14	(Japanese)	0.7476	[0.56-0.94] unit decrease	Illumina [6200000] (imputed)	N
1204	chr4	81205032	81205033	rs17004869	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Hypertension	22,566 Japanese ancestry cases, 28,226 Japanese ancestry controls	8,809 East Asian ancestry cases, 13,663 East Asian ancestry controls, 105,253 European ancestry individuals	4q21.21	FGF5	rs17004869-A	0.8721	7E-12	(Japanese)	0.1695	[0.12-0.22] unit decrease	Illumina [6200000] (imputed)	N
1204	chr4	81205032	81205033	rs17004869	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	4q21.21	FGF5	rs17004869-A	0.8721	6E-13	(Japanese)	0.631	[0.46-0.8] unit decrease	Illumina [6200000] (imputed)	N
1204	chr4	81205032	81205033	rs17004869	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Systolic blood pressure	140,882 European ancestry individuals	190,318 European ancestry individuals	4q21.21	FGF5	rs17004869-T	0.04977215	1E-9		0.7206	[0.49-0.95] unit increase	Affymetrix [~ 9800000] (imputed)	N
1204	chr4	81205867	81205868	rs7681907	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	4q21.21	NR	rs7681907-A	0.415367	6E-51		0.0504594	[0.044-0.057] unit increase	NR [19129689] (imputed)	N
1204	chr4	81206376	81206377	rs4690116	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		4q21.21	NR	rs4690116-A	NR	1E-25		0.07	NR unit increase	NR [NR] (imputed)	N
1204	chr4	81206376	81206377	rs4690116	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Male-pattern baldness	9,009 European ancestry cases, 8,491 European ancestry controls	NA	4q21.21	FGF5	rs4690116-?	NR	6E-9		1.1415524	[1.09-1.19]	Illumina [13436641] (imputed)	N
1204	chr4	81207038	81207039	rs982804	28272467	Heilmann-Heimbach S	2017-03-08	Nat Commun	Meta-analysis identifies novel risk loci and yields systematic insights into the biology of male-pattern baldness.	Male-pattern baldness	10,846 European ancestry cases, 11,672 European ancestry controls	NA	4q21.21		rs982804-T	0.42	2E-9		0.13	[0.091-0.169] unit decrease	Affymetrix, Illumina [8004650] (imputed)	N
1204	chr4	81218029	81218030	rs80189257	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	4q21.21	NR	rs80189257-?	NR	1E-6		0.233806	[0.14-0.33] unit increase	NR [13958389] (imputed)	N
1204	chr4	81225282	81225283	rs75178643	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Myringotomy	4,138 European ancestry cases, 85,089 European ancestry controls	NA	4q21.21	NR	rs75178643-?	NR	2E-6		0.4017	[0.22-0.58] unit decrease	Illumina [at least 560000] (imputed)	N
1204	chr4	81251197	81251198	rs6811219	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	4q21.21	NR	rs6811219-C	0.192179	1E-26		0.0421533	[0.034-0.05] unit decrease	NR [19129689] (imputed)	N
1204	chr4	81251197	81251198	rs6811219	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		4q21.21	C4orf22, FGF5	rs6811219-T	NR	2E-9		0.0469862	NR unit increase	NR [NR] (imputed)	N
1205	chr4	81267810	81267811	rs556246924	31816047	Boutin TS	2019-12-09	Hum Mol Genet	Insights into the genetic basis of retinal detachment.	Retinal detachment or retinal break	3,977 British ancestry cases, 360,233 British ancestry controls	NA	4q21.21	c4orf22	rs556246924-?	0.986	5E-6		1.8268358	[1.51-2.2]	Affymetrix, Illumina [7701827] (imputed)	N
1205	chr4	81289361	81289362	rs897962	31362332	Cheng Z	2019-07-30	Addict Biol	Genome-wide scan identifies opioid overdose risk locus close to MCOLN1.	Opioid overdose severity score	2,032 European ancestry individuals, 1,445 African American individuals	NA	4q21.21	C4orf22	rs897962-?	NR	9E-6	(AA)			Illumina [up to 10295719] (imputed)	N
1205	chr4	81337625	81337626	rs1039049	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	4q21.21	C4orf22	rs1039049-G	0.99	8E-7	(EA)	0.6584	[0.4-0.92] unit decrease	Illumina [~ 9000000] (imputed)	N
1205	chr4	81364419	81364420	rs141990949	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	4q21.21	C4orf22	rs141990949-A	0.01	5E-7		0.6976	[0.43-0.97] unit increase	Illumina [~ 9000000] (imputed)	N
1206	chr4	81476985	81476986	rs112867328	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	4q21.21		rs112867328-?	NR	3E-32				NR [~ 8900000] (imputed)	N
1206	chr4	81486271	81486272	rs4346635	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA		Intergenic	rs4346635-?	NR	8E-6		1.474	[NR]	Affymetrix [492217] (imputed)	N
1206	chr4	81525085	81525086	rs112948778	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	4q21.21	CFAP299	rs112948778-T	0.0169	1E-22		0.0723	[0.058-0.087] unit increase	Affymetrix [18391927] (imputed)	N
1207	chr4	81535392	81535393	rs1385890	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA		C4orf22	rs1385890-G	0.193	4E-6	(Vitamin B12 )	0.02	[NR] pmol/L increase	Illumina [899892]	N
1207	chr4	81554506	81554507	rs10033769	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	4q21.21	C4orf22	rs10033769-?	NR	9E-11		0.5196	[0.36-0.68] unit increase	Affymetrix [11100000] (imputed)	N
1207	chr4	81562977	81562978	rs116811165	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q21.21	NR	rs116811165-T	0.01045	9E-9	(PCMT1)	0.04298	NR unit increase	Illumina [1671387] (imputed)	N
1207	chr4	81568643	81568644	rs4146322	31362332	Cheng Z	2019-07-30	Addict Biol	Genome-wide scan identifies opioid overdose risk locus close to MCOLN1.	Opioid overdose severity score	2,032 European ancestry individuals, 1,445 African American individuals	NA	4q21.21	C4orf22	rs4146322-?	NR	1E-6				Illumina [up to 10295719] (imputed)	N
1207	chr4	81607194	81607195	rs17479000	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	4q21.21		rs17479000-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1208	chr4	81661425	81661426	rs72661730	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	4q21.21		rs72661730-?	NR	3E-72				NR [~ 8900000] (imputed)	N
1208	chr4	81707525	81707526	rs1994840	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	4q21.21	C4orf22	rs1994840-A	0.747	3E-8		5.566	[NR] z score increase	Affymetrix, Illumina [~ 11000000] (imputed)	N
1208	chr4	81731916	81731917	rs79504986	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Myopia (age of diagnosis)	104,293 European ancestry individuals	NA	4q21.21	NR	rs79504986-A	0.0126	5E-8		0.167	[0.11-0.23] unit decrease	Illumina [~ 10600000] (imputed)	N
1208	chr4	81743388	81743389	rs112728585	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	4q21.21		rs112728585-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1209	chr4	81852605	81852606	rs62302224	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	4q21.21	c4orf22	rs62302224-G	0.3439	4E-14		1.064	NR	Affymetrix [9154080] (imputed)	N
1209	chr4	81864778	81864779	rs191648835	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair/balding pattern: Pattern 4 (UKB data field 2395_4)	37,860 European ancestry cases, 169,176 European ancestry controls	NA	4q21.21		rs191648835-G	0.005387	3E-12		0.38	[0.27-0.49] unit increase	NR [11842647] (imputed)	N
1209	chr4	81901448	81901449	rs13136295	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent	41,073 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	4q21.21	NR	rs13136295-T	0.8527	2E-8		0.1111	[0.072-0.15] unit increase	Affymetrix, Illumina [~ 9300000] (imputed)	N
1209	chr4	81903048	81903049	rs7692381	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	4q21.21	C4orf22, BMP3	rs7692381-A	0.7625	6E-21		9.398	[NR] z score increase	Affymetrix, Illumina [~ 11000000] (imputed)	N
1209	chr4	81906023	81906024	rs7667446	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	4q21.21	NR	rs7667446-T		3E-11		0.1	[0.08-0.12] unit increase	NR [NR]	N
1209	chr4	81906968	81906969	rs4693773	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent	41,073 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	4q21.21	NR	rs4693773-T	0.8835	1E-8	(EA)	0.1331	[0.087-0.179] unit increase	Affymetrix, Illumina [~ 9300000] (imputed)	N
1210	chr4	81930813	81930814	rs1960445	23396134	Verhoeven VJ	2013-02-10	Nat Genet	Genome-wide meta-analyses of multiancestry cohorts identify multiple new susceptibility loci for refractive error and myopia.	Refractive error	37,382 European ancestry individuals, 3,995 Chinese ancestry individuals, 2,273 Malay ancestry individuals, 2,108 Indian ancestry individuals	NA	4q21.21	BMP3	rs1960445-C	0.017	1E-6		0.114	[0.067-0.161] unit decrease	Affymetrix, Illumina [2500000] (imputed)	N
1210	chr4	81942739	81942740	rs181242643	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q21.21	NR	rs181242643-A	0.01045	8E-10	(EIF2B1)	0.03132	NR unit increase	Illumina [1671387] (imputed)	N
1210	chr4	81947079	81947080	rs1353386	30306274	Shah RL	2018-10-10	Hum Genet	Genome-wide association studies for corneal and refractive astigmatism in UK Biobank demonstrate a shared role for myopia susceptibility loci.	Corneal astigmatism	Up to 86,335 European ancestry individuals		4q21.21	BMP3	rs1353386-A	0.148	1E-6		0.019	[0.011-0.027] dioptres increase	NR [5901671] (imputed)	N
1210	chr4	81951343	81951344	rs72868578	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	28,092 non-Hispanic White ancestry cases, 50,487 non-Hispanic White ancestry controls, 31,852 European ancestry cases, 428,084 European ancestry controls	NA		NR	rs72868578-A	NR	1E-11		1.1281		Affymetrix [9869154] (imputed)	N
1210	chr4	81951343	81951344	rs72868578	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	28,092 non-Hispanic White ancestry cases, 50,487 non-Hispanic White ancestry controls, 2,233 East Asian ancestry cases, 7,023 East Asian ancestry controls, 2,149 Hispanic/Latino cases, 6,620 Hispanic/Latino controls, 815 African American cases, 2,368 African American controls, 31,852 European ancestry cases, 428,084 European ancestry controls, 757 African ancestry cases, 7,897 African ancestry controls, 1,278 South Asian ancestry cases, 8,571 South Asian ancestry controls, 668 other admixed cases, 7,349 other admixed controls	313,278 European ancestry cases, 2,210,509 European ancestry controls, 7,715 African American cases, 120,390 African American controls, 3,934 East Asian ancestry cases, 104,766 East Asian ancestry controls, 21,408 Latino cases, 425,544 Latino controls, 874 South Asian ancestry cases, 26,037 South Asian ancestry controls		C4orf22, BMP3	rs72868578-A	NR	3E-12		1.07	[1.05-1.09]	Affymetrix [9869154] (imputed)	N
1210	chr4	81951910	81951911	rs6535231	30306274	Shah RL	2018-10-10	Hum Genet	Genome-wide association studies for corneal and refractive astigmatism in UK Biobank demonstrate a shared role for myopia susceptibility loci.	Refractive astigmatism	88,005 European ancestry individuals		4q21.21	BMP3	rs6535231-G	0.041	3E-6		0.034	[0.02-0.048] dioptres increase	NR [5900115] (imputed)	N
1210	chr4	81952636	81952637	rs74764079	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	4q21.21		rs74764079-A	0.03	5E-15		7.84	z score increase	Affymetrix [9061022] (imputed)	N
1210	chr4	81952636	81952637	rs74764079	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cataracts	39,519 European ancestry cases, 452,358 European ancestry controls, 38,194 East Asian ancestry cases, 140,532 East Asian ancestry controls	NA	4q21.21		rs74764079-A	NR	4E-10		0.1551	[0.11-0.2] unit increase	Affymetrix, Illumina [25845331] (imputed)	N
1210	chr4	81952636	81952637	rs74764079	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	4q21.21	BMP3	rs74764079-?	NR	1E-9		0.392197	[0.27-0.52] unit increase	NR [13958389] (imputed)	N
1210	chr4	81952636	81952637	rs74764079	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	4q21.21	NR	rs74764079-T		2E-20		0.32	[0.26-0.38] unit increase	NR [NR]	N
1210	chr4	81952636	81952637	rs74764079	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	4q21.21	ANXA3, BMP2K, NAA11, GK2, ANTXR2, PRDM8, FGF5, BMP3, PRKG2, RASGEF1B, HNRNPD	rs74764079-?		2E-65				Affymetrix, Illumina [NR] (imputed)	N
1210	chr4	81952636	81952637	rs74764079	31809533	Han X	2019-09-06	Hum Mol Genet	Genome-wide association analysis of 95 549 individuals identifies novel loci and genes influencing optic disc morphology.	Optic disc size	67,040 British ancestry individuals	28,509 European ancestry individuals	4q21.21	BMP3	rs74764079-A	0.03	2E-19		0.05	unit decrease	Affymetrix [8928767] (imputed)	N
1210	chr4	81952636	81952637	rs74764079	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	4q21.21		rs74764079-?	NR	2E-12				NR [~ 8900000] (imputed)	N
1210	chr4	81959965	81959966	rs5022942	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	4q21.21	NR	rs5022942-?	NR	5E-6		0.147092	[0.084-0.211] unit increase	NR [13958389] (imputed)	N
1210	chr4	81959965	81959966	rs5022942	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Myopia (age of diagnosis)	104,293 European ancestry individuals	NA	4q21.21	NR	rs5022942-A	0.2304	3E-19		0.0743	[0.058-0.091] unit decrease	Illumina [~ 10600000] (imputed)	N
1210	chr4	81959965	81959966	rs5022942	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Myopia	106,086 European ancestry cases, 85,757 European ancestry controls	NA	4q21.21	BMP3	rs5022942-?	NR	2E-23		1.0905125	[1.07-1.11]	Illumina [13762925] (imputed)	N
1210	chr4	81970255	81970256	rs11942256	31816047	Boutin TS	2019-12-09	Hum Mol Genet	Insights into the genetic basis of retinal detachment.	Retinal detachment or retinal break	3,977 British ancestry cases, 360,233 British ancestry controls	NA	4q21.21	BMP3	rs11942256-?	0.03799999999999992	2E-7		1.3100178	[1.16-1.48]	Affymetrix, Illumina [7701827] (imputed)	N
1210	chr4	82009706	82009707	rs3796804	22174851	Lingappa JR	2011-12-12	PLoS One	Genomewide association study for determinants of HIV-1 acquisition and viral set point in HIV-1 serodiscordant couples with quantified virus exposure.	HIV-1 susceptibility	496 African ancestry cases and 302 African ancestry exposed controls from serodiscordant couples	NA	4q21.21	PRKG2	rs3796804-?	NR	9E-6				Illumina [990115]	N
1210	chr4	82010772	82010773	rs3822224	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	4q21.21	PRKG2	rs3822224-?	NR	7E-10		0.018303063	[0.012-0.024] unit increase	Illumina [27896057] (imputed)	N
1210	chr4	82016220	82016221	rs2868134	33169155	Bigdeli TB	2020-11-10	Schizophr Bull	Genome-Wide Association Studies of Schizophrenia and Bipolar Disorder in a Diverse Cohort of US Veterans.	Schizophrenia	37,759 European ancestry cases, 7,509 African American cases, 1,234 Latino cases, 22,778 East Asian ancestry cases, 91,590 European ancestry controls, 8,337 African American controls, 3,090 Latino controls, 35,362 East Asian ancestry controls	NA	4q21.21	PRKG2	rs2868134-A	NR	3E-8		1.06	[1.04-1.08]	Affymetrix [up to 49134253] (imputed)	N
1211	chr4	82120911	82120912	rs984924	29947131	Smit DJA	2018-06-26	Hum Brain Mapp	Genome-wide association analysis links multiple psychiatric liability genes to oscillatory brain activity.	Electroencephalogram traits	up to 8,425 European and unknown ancestry individuals	NA	4q21.21	NR	rs984924-?	NR	5E-8	(alphaCz)	5.461	z score increase	Affymetrix, Illumina, Perlegen [at least 4959085] (imputed)	N
1211	chr4	82124333	82124334	rs41332544	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	4q21.21	NR	rs41332544-?	NR	4E-12				Affymetrix [NR]	N
1211	chr4	82126120	82126121	rs17484474	25189868	Sung YJ	2014-09-03	Am J Hypertens	Gene-smoking interactions identify several novel blood pressure loci in the Framingham Heart Study.	Blood pressure (smoking interaction)	Up to 6,889 individuals	NA	4q21.21	PRKG2	rs17484474-?	NR	6E-7	(SBP,Pack-years)			Affymetrix [2485435] (imputed)	N
1211	chr4	82128929	82128930	rs710835	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	4q21.21	PRKG2	rs710835-A	NR	9E-16		0.0274925	[0.021-0.034] unit increase	Affymetrix [321114] (imputed)	N
1211	chr4	82133135	82133135	rs150525413	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	4q21.21		rs150525413-CTAGA	0.223797	2E-30		0.0279499	[0.023-0.033] unit increase	Illumina [13479295] (imputed)	N
1211	chr4	82138299	82138300	rs788858	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	4q21.21	PRKG2	rs788858-A	0.706844	2E-15		0.0122893	[0.0093-0.0153] unit increase	Affymetrix [12370749]	N
1211	chr4	82141281	82141282	rs788856	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	4q21.21	PRKG2	rs788856-A	NR	1E-18		0.0271472	[0.021-0.033] unit increase	Affymetrix [321016] (imputed)	N
1211	chr4	82142780	82142781	rs1712383	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	4q21.21	PRKG2	rs1712383-T	NR	2E-12		0.0219455	[0.016-0.028] unit increase	Affymetrix [321114] (imputed)	N
1211	chr4	82142780	82142781	rs1712383	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	4q21.21	PRKG2	rs1712383-T	NR	4E-13		0.0242597	[0.018-0.031] unit increase	Affymetrix [323123] (imputed)	N
1211	chr4	82144925	82144926	rs1662853	23449627	Cousminer DL	2013-02-27	Hum Mol Genet	Genome-wide association and longitudinal analyses reveal genetic loci linking pubertal height growth, pubertal timing and childhood adiposity.	Pubertal anthropometrics	up to 5,043 European ancestry males, up to 5,756 European ancestry females	NA	4q21.21	BMP3, PRKG2	rs1662853-C	0.76	1E-7	(Pubertal growth)	0.08	[0.051-0.109] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1211	chr4	82149830	82149831	rs710841	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	4q21.21	NR	rs710841-?	NR	3E-16		0.05135293	[0.039-0.064] unit increase	Illumina [34656550] (imputed)	N
1211	chr4	82149830	82149831	rs710841	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	4q21.21	PRKG2	rs710841-T	0.2818	5E-9		0.0236	[0.016-0.031] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1211	chr4	82149830	82149831	rs710841	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	4q21.21	PRKG2	rs710841-T	0.2519	4E-6	(EA, women)	0.0257	[0.015-0.037] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1211	chr4	82149830	82149831	rs710841	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	4q21.21	PRKG2	rs710841-T	0.2519	1E-9	(EA)	0.0262	[0.018-0.035] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1211	chr4	82149830	82149831	rs710841	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	4q21.21	PRKG2	rs710841-T	0.2818	4E-6		0.0214	[0.012-0.03] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1211	chr4	82149830	82149831	rs710841	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	4q21.21	PRKG2	rs710841-T	0.2519	4E-6	(EA)	0.0228	[0.013-0.032] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1211	chr4	82149830	82149831	rs710841	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	4q21.21	PRKG2	rs710841-?	0.2818	1E-8				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1211	chr4	82149830	82149831	rs710841	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	4q21.21	PRKG2	rs710841-?	0.2519	6E-6	(EA, women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1211	chr4	82149830	82149831	rs710841	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	4q21.21	PRKG2	rs710841-?	0.2519	2E-9	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1211	chr4	82149830	82149831	rs710841	19343178	Soranzo N	2009-04-03	PLoS Genet	Meta-analysis of genome-wide scans for human adult stature identifies novel Loci and associations with measures of skeletal frame size.	Height	12,611 European ancestry individuals	7,187 European ancestry individuals	4q21.21	PRKG2	rs710841-?	0.12	2E-8		0.07	[0.04-0.10] s.d. increase	Illumina [229216]	N
1211	chr4	82149830	82149831	rs710841	18391951	Gudbjartsson DF	2008-04-06	Nat Genet	Many sequence variants affecting diversity of adult human height.	Height	30,968 European ancestry individuals	8,541 European ancestry individuals	4q21.21	BMP3, PRKG2, RASGEF1B	rs710841-A	0.27	2E-6		5.0	[3.04-6.96] % s.d. increase	Affymetrix, Illumina [up to 304226]	N
1211	chr4	82150005	82150006	rs788867	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	4q21.21	NR	rs788867-?	NR	1E-13		0.04613154	[0.034-0.058] unit increase	Illumina [34656550] (imputed)	N
1211	chr4	82150005	82150006	rs788867	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	4q21.21	PRKG2/BMP3	rs788867-T	0.68	9E-28		0.043	[NR] unit decrease	Affymetrix, Illumina [2834208] (imputed)	N
1211	chr4	82154281	82154282	rs1662845	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	4q21.21		rs1662845-T	0.484385	4E-8		0.0148609	[0.0096-0.0202] unit increase	Illumina [13479924] (imputed)	N
1211	chr4	82154281	82154282	rs1662845	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	4q21.21	PRKG2	rs1662845-T	NR	1E-12		0.0222955	[0.016-0.028] unit increase	Affymetrix [321114] (imputed)	N
1211	chr4	82154281	82154282	rs1662845	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	4q21.21	PRKG2	rs1662845-T	NR	2E-21		0.0271102	[0.022-0.033] unit increase	Affymetrix [321016] (imputed)	N
1211	chr4	82154281	82154282	rs1662845	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	4q21.21	PRKG2	rs1662845-T	NR	1E-11		0.0211522	[0.015-0.027] unit increase	Affymetrix [323123] (imputed)	N
1211	chr4	82155567	82155568	rs17556750	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	4q21.21	PRKG2	rs17556750-A	0.314	8E-48		0.046	[0.04-0.052] unit increase	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
1211	chr4	82160347	82160348	rs2197271	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in non-smokers	77,113 European ancestry women, 47,319 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	4q21.21	PRKG2	rs2197271-C	0.7215	8E-9		0.0268	[0.018-0.036] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1211	chr4	82160347	82160348	rs2197271	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in non-smokers	77,113 European ancestry women, 47,319 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	4q21.21	PRKG2	rs2197271-C	0.7215	6E-6	(men)	0.0319	[0.018-0.046] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1211	chr4	82160347	82160348	rs2197271	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	4q21.21	PRKG2	rs2197271-C	0.7215	2E-9				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1211	chr4	82160347	82160348	rs2197271	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	4q21.21	PRKG2	rs2197271-C	0.7215	2E-6	(men)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1211	chr4	82160347	82160348	rs2197271	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	4q21.21	PRKG2	rs2197271-C	0.7215	1E-9		0.0248	[0.017-0.033] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1211	chr4	82160347	82160348	rs2197271	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	4q21.21	PRKG2	rs2197271-C	0.7215	1E-6	(men)	0.0293	[0.017-0.041] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1211	chr4	82160347	82160348	rs2197271	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	4q21.21	PRKG2	rs2197271-C	0.7497	6E-13	(EA, men)	0.0394	[0.029-0.05] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1211	chr4	82160347	82160348	rs2197271	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	4q21.21	PRKG2	rs2197271-C	0.7497	2E-13	(EA)	0.0287	[0.021-0.036] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1211	chr4	82165789	82165790	rs994014	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	4q21.21	PRKG2	rs994014-C	NR	3E-13		0.0225992	[0.017-0.029] unit increase	Affymetrix [321114] (imputed)	N
1211	chr4	82165789	82165790	rs994014	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	4q21.21	PRKG2	rs994014-C	NR	4E-28		0.0336636	[0.028-0.04] unit increase	Affymetrix [321016] (imputed)	N
1211	chr4	82165789	82165790	rs994014	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	4q21.21	NR	rs994014-?	NR	3E-14		0.04822887	[0.036-0.061] unit increase	Illumina [34656550] (imputed)	N
1211	chr4	82165789	82165790	rs994014	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	4q21.21	intergenic	rs994014-C	0.311887	1E-26	(females)	0.03558	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1211	chr4	82165789	82165790	rs994014	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	4q21.21	intergenic	rs994014-C	0.311887	1E-17		0.02274	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1211	chr4	82165789	82165790	rs994014	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	4q21.21	intergenic	rs994014-C	0.311887	2E-13		0.01912	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1211	chr4	82165789	82165790	rs994014	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	4q21.21	intergenic	rs994014-C	0.311887	1E-20	(females)	0.0303	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1211	chr4	82165789	82165790	rs994014	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	4q21.21		rs994014-?	NR	6E-146				NR [~ 8900000] (imputed)	N
1211	chr4	82165789	82165790	rs994014	21998595	N'Diaye A	2011-10-06	PLoS Genet	Identification, replication, and fine-mapping of Loci associated with adult height in individuals of african ancestry.	Height	20,427 African ancestry individuals	Up to 16,436 African American individuals	4q21.21	intergenic	rs994014-T	0.29	8E-10		0.054	[0.036-0.072] unit decrease	Affymetrix, Illumina [3310998] (imputed)	N
1211	chr4	82168888	82168889	rs1662837	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	41,389 African ancestry individuals	11,364 African ancestry individuals, 253,288 European ancestry individuals	4q21.21	PRKG2	rs1662837-C	0.73	2E-10	(AA)	0.047	[0.031-0.063] unit increase	Affymetrix, Illumina [17972582] (imputed)	N
1211	chr4	82168888	82168889	rs1662837	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	41,389 African ancestry individuals	11,364 African ancestry individuals, 253,288 European ancestry individuals	4q21.21	PRKG2	rs1662837-C		1E-53				Affymetrix, Illumina [17972582] (imputed)	N
1211	chr4	82168888	82168889	rs1662837	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	25,369 African ancestry women	8,449 African ancestry women, up to 253,288 European ancestry women	4q21.21	PRKG2	rs1662837-C	0.731	4E-6	(AA)	0.042	[0.024-0.06] unit increase	Affymetrix, Illumina [19885954] (imputed)	N
1211	chr4	82168888	82168889	rs1662837	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	16,021 African ancestry men	2,915 African ancestry men, up to 253,288 European ancestry men	4q21.21	PRKG2	rs1662837-C	0.729	3E-6	(AA)	0.057	[0.033-0.081] unit increase	Affymetrix, Illumina [16055004] (imputed)	N
1211	chr4	82168888	82168889	rs1662837	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	4q21.21	PRKG2	rs1662837-T	0.6833	3E-6	(EA,men)	0.0255	[0.015-0.036] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1211	chr4	82168888	82168889	rs1662837	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	4q21.21	PRKG2	rs1662837-T	0.6833	2E-10	(EA, women)	0.0311	[0.021-0.041] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1211	chr4	82168888	82168889	rs1662837	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	4q21.21	PRKG2	rs1662837-T	0.6833	1E-13	(EA)	0.0283	[0.021-0.036] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1211	chr4	82172448	82172449	rs1662835	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	4q21.21	NR	rs1662835-?	NR	7E-8	(male)	0.20415	[0.13-0.28] unit increase	Affymetrix [7794483] (imputed)	N
1211	chr4	82172448	82172449	rs1662835	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	4q21.21	NR	rs1662835-?	NR	3E-11		0.15955	[0.11-0.21] unit increase	Affymetrix [7794483] (imputed)	N
1211	chr4	82174164	82174165	rs1443536	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	4q21.21		rs1443536-G	NR	8E-113		0.0325	[0.03-0.035] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1211	chr4	82174164	82174165	rs1443536	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	4q21.21	intergenic	rs1443536-A	0.695	2E-26		0.0218	[0.018-0.026] unit decrease	Affymetrix [18391927] (imputed)	N
1211	chr4	82178936	82178937	rs1975474	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	4q21.21	PRKG2	rs1975474-T	0.6933	6E-18		0.0596	[0.046-0.073] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1212	chr4	82184233	82184234	rs1878528	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	4q21.21		rs1878528-G	NR	2E-17		0.0156	[0.012-0.019] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1212	chr4	82184233	82184234	rs1878528	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	4q21.21	NR	rs1878528-?	NR	2E-6		0.02911165	[0.017-0.041] unit increase	Illumina [34656550] (imputed)	N
1212	chr4	82184233	82184234	rs1878528	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	4q21.21	PRKG2	rs1878528-G	0.33	4E-18		1.2	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
1212	chr4	82195101	82195102	rs11938641	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	4q21.21	NR	rs11938641-?	NR	5E-31				Affymetrix [~ 8270000] (imputed)	N
1212	chr4	82195772	82195772	rs137988704	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	4q21.21	PRKG2	rs137988704-CACTTCCTGATT	NR	6E-17		0.0281562	[0.022-0.035] unit increase	Affymetrix [321114] (imputed)	N
1212	chr4	82200141	82200142	rs4463061	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	4q21.21	PRKG2, RASGEF1B	rs4463061-?	NR	3E-38		0.045412082	[0.039-0.052] unit increase	Illumina [27896057] (imputed)	N
1212	chr4	82211635	82211636	rs11733845	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	4q21.21		rs11733845-A	0.347	5E-9	(conditional-joint)	0.0086	[0.0057-0.0115] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1212	chr4	82212169	82212170	rs10488936	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	4q21.21	RNU5A-2P	rs10488936-C	NR	9E-18		0.0284597	[0.022-0.035] unit increase	Affymetrix [323123] (imputed)	N
1212	chr4	82220323	82220324	rs2011962	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	4q21.21	NR	rs2011962-?	NR	9E-12		0.0430539	[0.031-0.055] unit increase	Illumina [34656550] (imputed)	N
1212	chr4	82220323	82220324	rs2011962	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	4q21.21	RASGEF1B	rs2011962-A	0.82	3E-15		0.046	[0.032-0.06] unit decrease	Affymetrix, Illumina [2704730] (imputed)	N
1212	chr4	82225528	82225529	rs2034631	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	4q21.21		rs2034631-T	0.6508	3E-9		0.0089	[0.006-0.0118] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1212	chr4	82225528	82225529	rs2034631	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	4q21.21	Intergenic	rs2034631-T	0.6508	3E-12	(MTAG)	0.0097	[0.007-0.0124] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1212	chr4	82241942	82241943	rs4693234	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	4q21.21	Intergenic	rs4693234-A	0.6395	5E-9	(MTAG)	0.0101	[0.0068-0.0134] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1212	chr4	82254907	82254908	rs17427571	30846698	Dashti HS	2019-03-07	Nat Commun	Genome-wide association study identifies genetic loci for self-reported habitual sleep duration supported by accelerometer-derived estimates.	Sleep duration	446,118 European ancestry individuals	47,180  adults, 10,554 children or adolescents	4q21.21	NR	rs17427571-A	NR	7E-8		0.726	unit increase	Affymetrix [14661600] (imputed)	N
1212	chr4	82261131	82261132	rs140301256	30694715	Sakornsakolpat P	2019-01-29	Am J Respir Cell Mol Biol	Genome-Wide Association Analysis of Single Breath Diffusing Capacity of Carbon Monoxide (DLCO).	Diffusing capacity of carbon monoxide	2,584 European ancestry individuals with chronic obstructive pulmonary disease, 3,002 European ancestry healthy individuals, 343 African American individuals with chronic obstructive pulmonary disease, 1,006 African American healthy individuals	NA	4q21.21	RASGEF1B	rs140301256-C	0.02	6E-6	(African American)	0.75	0.43-1.07 unit decrease	Illumina [NR] (imputed)	N
1212	chr4	82272104	82272105	rs41501452	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Sleep duration	384,317 European ancestry individuals	NA	4q21.21		rs41501452-G	0.3155	4E-9		0.01549	[0.01-0.021] unit decrease	Affymetrix, Illumina [10862567] (imputed)	N
1212	chr4	82281335	82281336	rs143321427	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	4q21.21	RNU5A-2P	rs143321427-T	NR	2E-8		0.0244328	[0.016-0.033] unit increase	Affymetrix [321016] (imputed)	N
1212	chr4	82288563	82288564	rs17005118	30846698	Dashti HS	2019-03-07	Nat Commun	Genome-wide association study identifies genetic loci for self-reported habitual sleep duration supported by accelerometer-derived estimates.	Sleep duration (short sleep)	106,192  European ancestry cases, 305,742 European ancestry controls	47,180  adults, 10,554 children or adolescents	4q21.21	PRKG2	rs17005118-A	NR	3E-9		1.03		NR [14661600] (imputed)	N
1212	chr4	82288563	82288564	rs17005118	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	4q21.21	NR	rs17005118-A	0.264	6E-10		1.043	[1.03-1.06]	Affymetrix, Illumina [NR] (imputed)	N
1212	chr4	82291770	82291771	rs6850494	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	4q21.21	NR	rs6850494-?		1E-10		0.0143297	[0.01-0.0187] unit decrease	Affymetrix [19400418] (imputed)	N
1213	chr4	82315469	82315470	rs17005123	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Pursuit maintenance gain	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	4q21.21	RASGEF1B	rs17005123-C	0.01367	6E-7	(EA)			Illumina [4404269] (imputed)	N
1213	chr4	82330923	82330924	rs10488930	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	4q21.21	RASGEF1B	rs10488930-G	NR	6E-10		0.0216428	[0.015-0.028] unit increase	Affymetrix [321114] (imputed)	N
1213	chr4	82330923	82330924	rs10488930	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	4q21.21	RASGEF1B	rs10488930-G	NR	4E-10		0.0217583	[0.015-0.029] unit increase	Affymetrix [323123] (imputed)	N
1213	chr4	82331441	82331442	rs1452372	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	4q21.21	RASGEF1B	rs1452372-G	NR	9E-13		0.02196	[0.016-0.028] unit increase	Affymetrix [321016] (imputed)	N
1213	chr4	82340851	82340852	rs6847878	28736931	Rotroff DM	2017-07-24	Clin Pharmacol Ther	Genetic Variants in HSD17B3, SMAD3, and IPO11 Impact Circulating Lipids in Response to Fenofibrate in Individuals With Type 2 Diabetes.	Total cholesterol change in response to fenofibrate in statin-treated type 2 diabetes	781 European ancestry individuals, 138 African American ancestry individuals, 345 unknown ancestry individuals		4q21.21	intergenic	rs6847878-?	NR	1E-6	(AA)	0.062	unit increase	Affymetrix, Illumina [8129838] (imputed)	N
1213	chr4	82387265	82387266	rs28544156	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	4q21.21	RASGEF1B	rs28544156-C	0.247261450637241	2E-6	(F_Veillonellaceae_RNT)	0.148779	[0.088-0.21] unit decrease	Illumina [7711310] (imputed)	N
1213	chr4	82421847	82421848	rs17499741	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Hyperopia	10,828 European ancestry hyperopia cases, 21,416 European ancestry emmetropia controls	NA	4q21.22	NR	rs17499741-?	NR	4E-6		0.0817568	[0.047-0.116] unit decrease	NR [13958389] (imputed)	N
1213	chr4	82421847	82421848	rs17499741	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	4q21.22	NR	rs17499741-G		1E-22		0.11	[0.09-0.13] unit increase	NR [NR]	N
1213	chr4	82422326	82422327	rs2166181	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	4q21.22	RASGEF1B, U6	rs2166181-?	NR	6E-9		0.119124	[0.079-0.159] unit increase	NR [13958389] (imputed)	N
1213	chr4	82422326	82422327	rs2166181	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	4q21.22	RASGEF1B, U6	rs2166181-A	0.519	3E-11		6.642	[NR] z score increase	Affymetrix, Illumina [~ 11000000] (imputed)	N
1213	chr4	82429387	82429388	rs72665513	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	4q21.22		rs72665513-T	0.13166	3E-9		0.059883	[0.04-0.08] unit increase	Affymetrix [15580782] (imputed)	N
1214	chr4	82462596	82462597	rs1822818	23377640	GENDEP Investigators	2013-02-01	Am J Psychiatry	Common genetic variation and antidepressant efficacy in major depressive disorder: a meta-analysis of three genome-wide pharmacogenetic studies.	Major depressive disorder	Up to 2,256 European ancestry cases	NA	4q21.22	RASGEF1B	rs1822818-T	0.87	6E-6	(partial response - SSRI treated - 2 weeks)	1.7737	[1.53-2.02]	Affymetrix, Illumina [1200000] (imputed)	N
1214	chr4	82467678	82467679	rs2868210	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	4q21.22		rs2868210-G	0.46	5E-8		5.47	z score increase	Affymetrix [9061022] (imputed)	N
1214	chr4	82467678	82467679	rs2868210	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	4q21.22	NR	rs2868210-G	0.4459	2E-9				NR [9056863] (imputed)	N
1214	chr4	82486055	82486056	rs11099476	30134803	Matana A	2018-04-11	Mol Med	Genome-wide meta-analysis identifies novel loci associated with parathyroid hormone level.	Plasma parathyroid hormone levels	806 Korculan (founder/genetic isolate) individuals, 831 Vis (founder/genetic isolate) individuals, 959 Croatian ancestry individuals	NA	4q21.22	RASGEF1B	rs11099476-T	0.54	1E-8		0.16	[0.1-0.22] unit increase	Illumina [7411206] (imputed)	N
1214	chr4	82493066	82493067	rs10033652	31044621	Rimpela JM	2019-05-02	Blood Press	Genome-wide association study of white-coat effect in hypertensive patients.	White coat effect (clinic diastolic blood pressure minus ambulatory diastolic blood pressure)	206 Finnish ancestry individuals	NA	4q21.22	RASGEF1B	rs10033652-A	0.48	5E-6		2.2	[1.22-3.18] unit increase	Illumina [629414]	N
1215	chr4	82587049	82587050	rs11099493	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	4q21.22	RASGEF1B	rs11099493-A	0.700502	5E-11		1.06	[1.04-1.07]	NR [8126035] (imputed)	N
1215	chr4	82587049	82587050	rs11099493	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	4q21.22	RASGEF1B, HNRNPD	rs11099493-?	NR	2E-13		0.0396595	[0.029-0.05] unit decrease	Illumina [4804024] (imputed)	N
1215	chr4	82587049	82587050	rs11099493	32469254	Matsunaga H	2020-05-29	Circ Genom Precis Med	Transethnic Meta-analysis of Genome-wide Association Studies Identifies Three New Loci and Characterizes Population-specific Differences for Coronary Artery Disease.	Coronary artery disease	15,302 Japanese ancestry cases, 76,014 European and East Asian ancestry cases, 36,140 Japanese ancestry controls, 264,785 European and East Asian ancestry controls	NA	4q21.22	RASGEF1B, HNRNPD	rs11099493-A	0.7	4E-8		1.05	[1.02-1.08]	Illumina [5167567] (imputed)	N
1215	chr4	82587049	82587050	rs11099493	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	4q21.22	intergenic	rs11099493-A	0.6924	2E-10		0.039	[0.027-0.051] unit increase	Affymetrix [at least 7947838] (imputed)	N
1215	chr4	82587049	82587050	rs11099493	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	4q21.22	intergenic	rs11099493-A	0.6944	5E-10		0.0431	[0.03-0.057] unit increase	NR [8041861] (imputed)	N
1215	chr4	82587049	82587050	rs11099493	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	4q21.22	intergenic	rs11099493-A	0.694	5E-10		0.043	[0.029-0.057] unit increase	Affymetrix [7947838] (imputed)	N
1215	chr4	82616044	82616045	rs6535273	33987465	Alfradique-Dunham I	2021-01-28	Neurol Genet	Genome-Wide Association Study Meta-Analysis for Parkinson Disease Motor Subtypes.	Parkinson's disease motor subtype (tremor to postural instability/gait difficulty score ratio)	3,212 European ancestry individuals	NA	4q21.22	RASGEF1B	rs6535273-T	0.39	1E-6		0.11	[0.071-0.149] unit increase	Illumina [14638245] (imputed)	N
1215	chr4	82625720	82625721	rs36002015	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	20,917 European ancestry cases, 440,906 European ancestry controls, 14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	4q21.22		rs36002015-G	NR	3E-9		0.0569	[0.038-0.076] unit decrease	Affymetrix, Illumina [25841367] (imputed)	N
1215	chr4	82634809	82634810	rs6834681	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	1,940 Japanese ancestry cases, 7,408 Japanese ancestry controls	4,071 Japanese ancestry cases, 54,470 Japanese ancestry controls	4q21.22	COX5BP1	rs6834681-A	NR	6E-6		1.126	[1.075-1.178]	Illumina [6627481] (imputed)	N
1215	chr4	82693535	82693536	rs6853410	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal cancer	978 Austrian ancestry cases, 4,294 European ancestry controls	NA	4q21.22	Intergenic	rs6853410-?		7E-6		1.315	[NR]	Affymetrix [492217] (imputed)	N
1216	chr4	82736550	82736551	rs141033168	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	4q21.22	NR	rs141033168-?	NR	2E-6		0.0081738	[0.0048-0.0115] unit decrease	Affymetrix [805426] (imputed)	N
1216	chr4	82761464	82761465	rs536504	30219690	Heinzman JT	2018-09-07	J Affect Disord	GWAS and systems biology analysis of depressive symptoms among smokers from the COPDGene cohort.	Depression in smokers	1,622 European ancestry cases, 391 African American cases, 4,954 European ancestry controls, 2,749 African American controls	NA	4q21.22	RASGEF1B	rs536504-C	0.6995	7E-6	(EA)			Illumina [NR] (imputed)	N
1218	chr4	82970815	82970816	rs7675557	31212010	Cabana-Dominguez J	2019-06-15	Prog Neuropsychopharmacol Biol Psychiatry	Genome-wide association meta-analysis of cocaine dependence: Shared genetics with comorbid conditions.	Cocaine dependence	2,085 European ancestry cases, 4,293 European ancestry controls	NA	4q21.22	RASGEF1B	rs7675557-A	NR	2E-6		0.2157	[0.13-0.31] unit decrease	Illumina [9290362] (imputed)	N
1218	chr4	82981822	82981823	rs17005355	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	4q21.22	RASGEF1B	rs17005355-A	0.9903	2E-6		0.2047	[0.12-0.29] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1218	chr4	82981822	82981823	rs17005355	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	4q21.22	RASGEF1B	rs17005355-A	0.9903	2E-6		0.2047	[0.12-0.29] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1218	chr4	82981822	82981823	rs17005355	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	4q21.22	RASGEF1B	rs17005355-A	0.9899	2E-6		0.1729	[0.1-0.24] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1218	chr4	83093229	83093230	rs182442984	25839716	Ng E	2015-04-02	Environ Res	Genome-wide association study of plasma levels of polychlorinated biphenyls disclose an association with the CYP2B6 gene in a population-based sample.	Polychlorinated biphenyl levels	922 European ancestry individuals	NA	4q21.22	NR	rs182442984-?		4E-7	(PCB180)	0.48	[0.3-0.66] unit decrease	Illumina [8736858] (imputed)	N
1218	chr4	83093229	83093230	rs182442984	25839716	Ng E	2015-04-02	Environ Res	Genome-wide association study of plasma levels of polychlorinated biphenyls disclose an association with the CYP2B6 gene in a population-based sample.	Polychlorinated biphenyl levels	922 European ancestry individuals	NA	4q21.22	NR	rs182442984-?		2E-7	(PCB170)	0.48	[0.3-0.66] unit decrease	Illumina [8736858] (imputed)	N
1218	chr4	83093229	83093230	rs182442984	25839716	Ng E	2015-04-02	Environ Res	Genome-wide association study of plasma levels of polychlorinated biphenyls disclose an association with the CYP2B6 gene in a population-based sample.	Polychlorinated biphenyl levels	922 European ancestry individuals	NA	4q21.22	NR	rs182442984-?		1E-7	(PCB169)	0.51	[0.31-0.71] unit decrease	Illumina [8736858] (imputed)	N
1219	chr4	83114529	83114530	rs1389044	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	4q21.22	NR	rs1389044-?	NR	5E-9				Affymetrix [NR]	N
1219	chr4	83192564	83192564	rs564988630	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	4q21.22		rs564988630-C	0.5	2E-8				NR [NR] (imputed)	N
1219	chr4	83192564	83192564	rs564988630	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	4q21.22		rs564988630-C	0.5	5E-10		0.01	% increase	NR [NR] (imputed)	N
1219	chr4	83209345	83209346	rs7692359	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	4q21.22		rs7692359-T	0.7786	1E-10		0.0109	[0.0076-0.0142] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1219	chr4	83209345	83209346	rs7692359	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	4q21.22	Intergenic	rs7692359-T	0.7786	1E-13	(MTAG)	0.0117	[0.0086-0.0148] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1219	chr4	83218229	83218230	rs6822283	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	4q21.22	HNRNPD	rs6822283-T	0.767901	3E-11		0.00186815	[0.0013-0.0024] unit increase	Affymetrix [13995440] (imputed)	N
1219	chr4	83218229	83218230	rs6822283	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	4q21.22	Intergenic	rs6822283-T	0.7622	4E-10	(MTAG)	0.0131	[0.009-0.0172] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1219	chr4	83227670	83227671	rs60884807	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	4q21.22	NR	rs60884807-?	NR	2E-12				Affymetrix [~ 8270000] (imputed)	N
1220	chr4	83239772	83239773	rs57180764	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	4q21.22		rs57180764-A	0.7676	3E-11		0.017	[0.011-0.023] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
1220	chr4	83239772	83239773	rs57180764	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	4q21.22	Intergenic	rs57180764-A	0.7621	5E-15	(MTAG)	0.0152	[0.011-0.019] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1220	chr4	83239772	83239773	rs57180764	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	4q21.22	Intergenic	rs57180764-A	0.7621	7E-10		0.0164	[0.011-0.022] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1220	chr4	83240238	83240243	rs147751744	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	4q21.22		rs147751744-T	NR	3E-9		0.0114	[0.0077-0.0151] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1220	chr4	83245179	83245180	rs116243488	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	4q21.22	NR	rs116243488-T	0.08516100000000004	4E-8		0.00846261	[0.0054-0.0115] unit increase	Affymetrix [16582909] (imputed)	N
1220	chr4	83249358	83249359	rs6833942	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip	15 Asian ancestry cases, 13 European ancestry cases, 15 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	4q21.22	NR	rs6833942-?	NR	5E-6		2.93	[2.35-3.64]	Illumina [539000] (imputed)	N
1220	chr4	83251854	83251855	rs72658930	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	4q21.22		rs72658930-?	NR	6E-15				NR [~ 8900000] (imputed)	N
1220	chr4	83254647	83254647	rs200918018	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	4q21.22	RP11-127B20.2	rs200918018-TA	NR	5E-11		0.0250468	[0.018-0.033] unit decrease	Affymetrix [321114] (imputed)	N
1220	chr4	83274207	83274208	rs7691121	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	4q21.22		rs7691121-?	NR	3E-11				NR [~ 8900000] (imputed)	N
1220	chr4	83279040	83279041	rs6846730	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	4q21.22	HNRNPD	rs6846730-C	0.7646999999999999	3E-14		1.0326312		Affymetrix [11880941] (imputed)	N
1220	chr4	83279040	83279041	rs6846730	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	4q21.22	HNRNPD	rs6846730-C	0.7646999999999999	3E-14		1.0328273		Affymetrix [11880941] (imputed)	N
1220	chr4	83284497	83284498	rs6836837	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	4q21.22		rs6836837-C	0.23	2E-8		5.6	z score increase	Affymetrix [9061022] (imputed)	N
1221	chr4	83370833	83370834	rs6850546	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	4q21.22	NR	rs6850546-A	NR	3E-6	(GEE model)	1.2771	[0.74-1.82] unit increase	NR [NR] (imputed)	N
1222	chr4	83499312	83499313	rs7658637	20125193	Cirulli ET	2010-02-03	Eur J Hum Genet	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American individuals, up to 74 South Asian ancestry individuals	NA	4q21.22	AC067942.6-1	rs7658637-?	NR	6E-7	(Animals)			Illumina [up to 563855]	N
1222	chr4	83512840	83512841	rs72909131	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	4q21.22	NR	rs72909131-?	NR	7E-7		0.5037	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1222	chr4	83537355	83537356	rs2903818	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	349,856 European ancestry individuals, 91,908 East Asian ancestry individuals	NA	4q21.22		rs2903818-C	NR	7E-11		0.0131	[0.0092-0.017] unit decrease	Affymetrix, Illumina [20529536] (imputed)	N
1222	chr4	83542615	83542616	rs67445452	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	4q21.22	LINC00575	rs67445452-T	0.192748	4E-25		0.029070785	[0.024-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
1222	chr4	83543278	83543279	rs1806559	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Lymphocyte counts	62,076 Japanese ancestry individuals	NA	4q21.22	LINC00575	rs1806559-?	NR	3E-11		0.04133	[0.029-0.054] unit decrease novel	Illumina [6108953] (imputed)	N
1222	chr4	83545975	83545976	rs13138355	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q21.22	NR	rs13138355-T	0.208093	1E-105				Affymetrix, Illumina [19872809] (imputed)	N
1222	chr4	83545975	83545976	rs13138355	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	4q21.22	NR	rs13138355-T	0.185539	2E-102		0.054823	[0.05-0.06] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
1222	chr4	83545975	83545976	rs13138355	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	4q21.22		rs13138355-?	NR	8E-78				NR [~ 8900000] (imputed)	N
1222	chr4	83545975	83545976	rs13138355	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	4q21.22	LINC00575	rs13138355-T	0.1862	6E-20		0.04207902	[0.033-0.051] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1222	chr4	83545975	83545976	rs13138355	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	4q21.22	LINC00575	rs13138355-T	0.1862	5E-13		0.03342184	[0.024-0.042] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1222	chr4	83545975	83545976	rs13138355	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	4q21.22	LINC00575	rs13138355-T	0.1862	7E-25		0.04726535	[0.038-0.056] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1222	chr4	83547861	83547862	rs17005891	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	4q21.22		rs17005891-A	NR	2E-59		0.0379	[0.033-0.042] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1222	chr4	83547861	83547862	rs17005891	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	154,355 East Asian ancestry individuals	NA	4q21.22		rs17005891-A	0.338043	1E-20		0.0332802	[0.026-0.04] unit decrease	Illumina [13479091] (imputed)	N
1222	chr4	83547861	83547862	rs17005891	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	4q21.22		rs17005891-A	NR	2E-16		0.0214	[0.016-0.026] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
1222	chr4	83547861	83547862	rs17005891	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	95,717 East Asian ancestry individuals	NA	4q21.22		rs17005891-A	0.337076	3E-18		0.0406234	[0.031-0.05] unit decrease	Illumina [13471431] (imputed)	N
1222	chr4	83547861	83547862	rs17005891	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	4q21.22		rs17005891-A	NR	5E-51		0.0307	[0.027-0.035] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
1222	chr4	83547861	83547862	rs17005891	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	4q21.22		rs17005891-G	0.816	2E-35				Affymetrix [10369434] (imputed)	N
1222	chr4	83547861	83547862	rs17005891	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	4q21.22		rs17005891-G	0.816	7E-26				Affymetrix [10369434] (imputed)	N
1222	chr4	83547861	83547862	rs17005891	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	4q21.22		rs17005891-G	0.816	3E-41				Affymetrix [10369434] (imputed)	N
1222	chr4	83547861	83547862	rs17005891	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	4q21.22		rs17005891-G	0.816	3E-34				Affymetrix [10369434] (imputed)	N
1222	chr4	83547861	83547862	rs17005891	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	4q21.22		rs17005891-G	0.816	1E-17				Affymetrix [10369434] (imputed)	N
1222	chr4	83547861	83547862	rs17005891	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	4q21.22	SCD5	rs17005891-A	0.183919	4E-62		0.047421582	[0.042-0.053] unit decrease	Affymetrix [93095623] (imputed)	N
1222	chr4	83547861	83547862	rs17005891	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	4q21.22	SCD5	rs17005891-A	0.18396	2E-61		0.04716666	[0.042-0.053] unit decrease	Affymetrix [93095623] (imputed)	N
1222	chr4	83547861	83547862	rs17005891	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	4q21.22	SCD5	rs17005891-A	0.183941	6E-44		0.039758205	[0.034-0.045] unit decrease	Affymetrix [93095623] (imputed)	N
1222	chr4	83547861	83547862	rs17005891	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	4q21.22	SCD5	rs17005891-A	0.18394	2E-83		0.055337287	[0.05-0.061] unit decrease	Affymetrix [93095623] (imputed)	N
1222	chr4	83547861	83547862	rs17005891	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q21.22	NR	rs17005891-A	0.211959	5E-105				Affymetrix, Illumina [24649327] (imputed)	N
1222	chr4	83547861	83547862	rs17005891	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	4q21.22	NR	rs17005891-A	0.184697	2E-85		0.046415	[0.042-0.051] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1222	chr4	83547861	83547862	rs17005891	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	151,807 East Asian ancestry individuals	NA	4q21.22	NR	rs17005891-G	0.663684	1E-19		0.035162	[0.028-0.043] SD units increase	Affymetrix, Illumina [16710636] (imputed)	N
1222	chr4	83547861	83547862	rs17005891	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q21.22	NR	rs17005891-A	0.199223	4E-31				Affymetrix, Illumina [23114412] (imputed)	N
1222	chr4	83547861	83547862	rs17005891	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	4q21.22	NR	rs17005891-A	0.18418	9E-31		0.028596	[0.024-0.033] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
1222	chr4	83547861	83547862	rs17005891	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	4q21.22	NR	rs17005891-A	0.184381	1E-98		0.050963	[0.046-0.056] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1222	chr4	83547861	83547862	rs17005891	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	4q21.22		rs17005891-?	NR	3E-55				NR [~ 8900000] (imputed)	N
1222	chr4	83547861	83547862	rs17005891	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	4q21.22	SCD5	rs17005891-A	0.1849	2E-35		0.0571146	[0.048-0.066] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1222	chr4	83547861	83547862	rs17005891	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	4q21.22	SCD5	rs17005891-A	0.185	1E-35		0.05731531	[0.048-0.066] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1222	chr4	83548418	83548419	rs17005892	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	89,266 East Asian ancestry individuals	NA	4q21.22	NR	rs17005892-T	0.661069	4E-17		0.042104	[0.032-0.052] SD units increase	Affymetrix, Illumina [16289068] (imputed)	N
1222	chr4	83552278	83552278	rs553093210	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	4q21.22	SCD5	rs553093210-CA	0.214596	2E-10		0.017626105	[0.012-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1222	chr4	83552290	83552291	rs28476539	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	4q21.22	SCD5	rs28476539-A	0.1825	5E-10		0.02900354	[0.02-0.038] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1222	chr4	83552290	83552291	rs28476539	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	4q21.22	SCD5	rs28476539-A	0.1825	3E-10		0.02932731	[0.02-0.038] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1222	chr4	83553332	83553333	rs201015026	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	4q21.22	SCD5	rs201015026-T	0.1721	1E-22		0.04721583	[0.038-0.057] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1222	chr4	83554342	83554343	rs71596787	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	4q21.22	NR	rs71596787-I	0.18289	2E-68		0.046261	[0.041-0.051] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1222	chr4	83554655	83554656	rs7655583	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	4q21.22		rs7655583-C	NR	3E-58		0.041	[0.036-0.046] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
1222	chr4	83556543	83556544	rs6832591	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	4q21.22		rs6832591-G	NR	2E-64		0.043	[0.038-0.048] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
1222	chr4	83556570	83556571	rs6832609	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	4q21.22	SCD5	rs6832609-G	0.184778	1E-71		0.051166385	[0.046-0.057] unit decrease	Affymetrix [93095623] (imputed)	N
1222	chr4	83556586	83556587	rs6832625	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	4q21.22		rs6832625-A	0.815	5E-42				Affymetrix [10369434] (imputed)	N
1222	chr4	83556630	83556631	rs6832779	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	White blood cell count	107,964 Japanese ancestry individuals	NA	4q21.22	SCD5	rs6832779-?	NR	1E-13		0.0359	[0.026-0.045] unit decrease novel	Illumina [6108953] (imputed)	N
1222	chr4	83556705	83556706	rs6832951	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	4q21.22	SCD5	rs6832951-G	0.1849	7E-20		0.04246681	[0.033-0.052] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1222	chr4	83557431	83557432	rs34221980	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	4q21.22	SCD5	rs34221980-T	0.1957	2E-20		0.04231858	[0.033-0.051] unit increase	Affymetrix [~ 2500000] (imputed)	N
1222	chr4	83557431	83557432	rs34221980	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	4q21.22	SCD5	rs34221980-T	0.1957	9E-23		0.04497852	[0.036-0.054] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1222	chr4	83562312	83562313	rs6824723	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q21.22	NR	rs6824723-G	0.210922	6E-119				Affymetrix, Illumina [23467995] (imputed)	N
1222	chr4	83562452	83562453	rs6535362	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q21.22	NR	rs6535362-C	0.211747	3E-63				Affymetrix, Illumina [23472807] (imputed)	N
1222	chr4	83568121	83568122	rs7672535	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	4q21.22	SCD5	rs7672535-A	0.16465	1E-11		0.020273786	[0.014-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1222	chr4	83569736	83569737	rs7679857	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	95,119 East Asian ancestry individuals	NA	4q21.22		rs7679857-T	0.36726	6E-21		0.0426852	[0.034-0.052] unit decrease	Illumina [13471440] (imputed)	N
1222	chr4	83574747	83574748	rs17006028	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	88,929 East Asian ancestry individuals	NA	4q21.22	NR	rs17006028-C	0.625499	3E-22		0.047705	[0.038-0.057] SD units increase	Affymetrix, Illumina [16289044] (imputed)	N
1222	chr4	83575211	83575212	rs115007843	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Monocyte count	62,076 Japanese ancestry individuals	NA	4q21.22	SCD5	rs115007843-?	NR	3E-17		0.0534	[0.041-0.066] unit decrease novel	Illumina [6108953] (imputed)	N
1222	chr4	83575906	83575907	rs17006038	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	4q21.22	SCD5	rs17006038-G	0.18534	2E-12		0.02018979	[0.015-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1222	chr4	83575906	83575907	rs17006038	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	4q21.22	NR	rs17006038-G	0.18546	6E-17		0.022008	[0.017-0.027] SD unit decrease	Affymetrix, Illumina [50036608] (imputed)	N
1222	chr4	83578270	83578271	rs12642790	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	4q21.22		rs12642790-G	NR	5E-8		0.0116	[0.0075-0.0157] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
1222	chr4	83578270	83578271	rs12642790	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	4q21.22	SCD5	rs12642790-A	0.3378	4E-10		1.04	[1.03-1.06]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1222	chr4	83581749	83581750	rs1526061	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q21.22	NR	rs1526061-A	0.210378	8E-19				Affymetrix, Illumina [19905671] (imputed)	N
1222	chr4	83584495	83584496	rs993380	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	4q21.22	NR	rs993380-G	0.6352	4E-12		0.0272	[0.02-0.035] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1222	chr4	83584495	83584496	rs993380	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	4q21.22	SCD5	rs993380-A	0.334449877168873	5E-10		0.0507	[0.035-0.067] unit increase	NR [5035015] (imputed)	N
1222	chr4	83585595	83585596	rs35536723	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	4q21.22		rs35536723-A	NR	1E-8		0.0437	[0.029-0.059] unit decrease	Affymetrix, Illumina [25845091] (imputed)	N
1222	chr4	83586670	83586671	rs2135507	26422391	Yellin JL	2015-09-28	J Pediatr Orthop	Candidate Loci are Revealed by an Initial Genome-wide Association Study of Juvenile Osteochondritis Dissecans.	Juvenile osteochondritis dissecans	209 European ancestry cases, 1,855 European ancestry controls	NA	4q21.22	NR	rs2135507-?		9E-6		1.8338529	[NR]	Illumina [NR]	N
1222	chr4	83587561	83587562	rs10471048	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	4q21.22	NR	rs10471048-G	0.3487	2E-12		0.0337	[0.024-0.043] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1223	chr4	83637217	83637217	rs33954608	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	4q21.22	SCD5	rs33954608-GA	0.279162	6E-17		0.021140462	[0.016-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1223	chr4	83637217	83637217	rs33954608	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	4q21.22	SCD5	rs33954608-GA	0.279233	1E-13		0.018550318	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1223	chr4	83637217	83637217	rs33954608	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	4q21.22	SCD5	rs33954608-GA	0.279225	7E-12		0.017228134	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1223	chr4	83649111	83649112	rs115533905	28203683	Heit JA	2017-02-16	Thromb Haemost	Identification of unique venous thromboembolism-susceptibility variants in African-Americans.	Venous thromboembolism adjusted for sickle cell variant rs77121243-T	393 African American cases, 4,941 African American controls.	NR	4q21.22	SCD5	rs115533905-T	0.1617	4E-6		1.593	[1.307-1.942]	Affymetrix, Illumina [14074516] (imputed)	N
1223	chr4	83753925	83753926	rs139850880	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		SEC31A	rs139850880-?	NR	9E-9		1.83698	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1224	chr4	83793920	83793921	rs10022260	27611488	Almoguera B	2016-09-09	Am J Respir Crit Care Med	Identification of Four Novel Loci in Asthma in European American and African American Populations.	Adult asthma	337 African American allergic asthma cases, 321 African American non-allergic asthma cases, 1,367 African American controls, 466 European American allergic asthma cases, 626 European American non-allergic asthma cases, 7,878 European American controls	NA	4q21.22	SEC31A	rs10022260-?	NR	3E-6		0.212	[0.12-0.3] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1224	chr4	83807209	83807210	rs57960857	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	4q21.22	SEC31A	rs57960857-A	0.5978	8E-9		0.02111551	[0.014-0.028] unit increase	Affymetrix [~ 2500000] (imputed)	N
1224	chr4	83820169	83820170	rs4302451	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	4q21.22		rs4302451-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1224	chr4	83831295	83831296	rs17352163	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		THAP9	rs17352163-?	NR	3E-10		1.91246	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1224	chr4	83834772	83834773	rs35895091	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	4q21.22		rs35895091-?	NR	1E-7				NR [~ 8900000] (imputed)	N
1224	chr4	83841863	83841864	rs2061343	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q21.22	NR	rs2061343-A	0.19013	1E-14				Affymetrix, Illumina [24653286] (imputed)	N
1224	chr4	83848317	83848320	rs35807109	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	4q21.22	LIN54	rs35807109-A	0.179174	1E-18		0.025352744	[0.02-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
1224	chr4	83848317	83848320	rs35807109	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	4q21.22	LIN54	rs35807109-A	0.17916	1E-9		0.017506689	[0.012-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1224	chr4	83853985	83853986	rs28539166	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	4q21.22		rs28539166-A	NR	2E-21		0.0211	[0.017-0.025] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
1224	chr4	83853985	83853986	rs28539166	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	4q21.22		rs28539166-A	NR	1E-11		0.0146	[0.01-0.019] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
1224	chr4	83856660	83856661	rs6848366	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	4q21.22		rs6848366-G	0.564	2E-8				Affymetrix [10369434] (imputed)	N
1224	chr4	83863286	83863287	rs60942635	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	4q21.22	LIN54	rs60942635-G	0.428964	3E-10		0.014366145	[0.0099-0.0188] unit decrease	Affymetrix [93095623] (imputed)	N
1224	chr4	83863286	83863287	rs60942635	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	4q21.22	LIN54	rs60942635-G	0.428924	3E-17		0.019162046	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1224	chr4	83863302	83863303	rs13119433	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	4q21.22	LIN54	rs13119433-T	0.337946	6E-13		0.017880967	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1224	chr4	83863302	83863303	rs13119433	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q21.22	NR	rs13119433-T	0.352578	2E-10				Affymetrix, Illumina [22063850] (imputed)	N
1224	chr4	83863302	83863303	rs13119433	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	4q21.22	NR	rs13119433-T	0.339993	2E-12		0.015219	[0.011-0.019] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
1224	chr4	83864042	83864043	rs55957664	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	4q21.22	NR	rs55957664-C	NR	1E-9		0.015	[0.01-0.02] unit increase	Affymetrix [9000000] (imputed)	N
1224	chr4	83864916	83864917	rs11934234	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	4q21.22	NR	rs11934234-A	0.181959	2E-16		0.019616	[0.015-0.024] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
1224	chr4	83873372	83873373	rs11938691	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	4q21.22		rs11938691-A	NR	5E-10		0.0127	[0.0088-0.0166] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
1224	chr4	83885209	83885210	rs60065504	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	4q21.22	LIN54	rs60065504-C	0.4458	1E-9		0.02181981	[0.015-0.029] unit increase	Affymetrix [~ 2500000] (imputed)	N
1225	chr4	83886421	83886422	rs16999103	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	4q21.22	NR	rs16999103-A	0.186353	5E-14		0.017776	[0.013-0.022] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
1225	chr4	83888214	83888215	rs149825319	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		LIN54	rs149825319-?	NR	2E-8		1.80175	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1225	chr4	83890974	83890975	rs6535419	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	4q21.22	LIN54	rs6535419-A	0.7117	6E-10		0.1329	[0.091-0.175] mmHg increase	Affymetrix [NR] (imputed)	N
1225	chr4	83892690	83892690	rs547871726	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	4q21.22	LIN54	rs547871726-TA	0.175772	7E-11		0.019208051	[0.013-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1225	chr4	83895218	83895219	rs7681303	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	4q21.22	NR	rs7681303-C	0.814925	3E-10		0.015057	[0.01-0.02] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1225	chr4	83895225	83895226	rs13127052	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	4q21.22		rs13127052-A	NR	2E-8		0.0143	[0.0094-0.0192] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
1225	chr4	83895231	83895232	rs13103322	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	4q21.22	LIN54	rs13103322-G	0.1997	6E-12		0.03149645	[0.023-0.04] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1225	chr4	83895316	83895317	rs11937741	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	4q21.22	LIN54	rs11937741-T	0.104826	2E-10		0.024016777	[0.017-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
1225	chr4	83896817	83896818	rs12649662	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	4q21.22	LIN54	rs12649662-A	0.25464	9E-10		0.015708419	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1225	chr4	83896817	83896818	rs12649662	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	4q21.22	LIN54	rs12649662-A	0.2258	4E-11		0.2194	[0.15-0.28] mmHg decrease	Affymetrix [NR] (imputed)	N
1225	chr4	83901723	83901724	rs116142917	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	4q21.22	LIN54	rs116142917-G	0.255415	7E-18		0.021846225	[0.017-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1225	chr4	83903894	83903895	rs2868708	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	4q21.22		rs2868708-T	0.744	3E-11				Affymetrix [10369434] (imputed)	N
1225	chr4	83903894	83903895	rs2868708	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	4q21.22		rs2868708-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1225	chr4	83912596	83912597	rs7691339	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	4q21.22	NR	rs7691339-C	0.813113	2E-27		0.025942	[0.021-0.031] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
1225	chr4	83912596	83912597	rs7691339	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q21.22	NR	rs7691339-C	0.802493	3E-12				Affymetrix, Illumina [24588908] (imputed)	N
1225	chr4	83912596	83912597	rs7691339	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q21.22	NR	rs7691339-C	0.803637	5E-17				Affymetrix, Illumina [24558453] (imputed)	N
1225	chr4	83916643	83916644	rs6845791	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Red blood cell count	108,794 Japanese ancestry individuals	NA	4q21.22	LIN54	rs6845791-?	NR	8E-9		0.03327	[0.022-0.045] unit decrease novel	Illumina [6108953] (imputed)	N
1225	chr4	83917036	83917037	rs13111599	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	4q21.22	LIN54	rs13111599-A	0.262806	3E-9		0.0128995	[0.0087-0.0171] unit decrease	Affymetrix [NR] (imputed)	N
1225	chr4	83917036	83917037	rs13111599	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	4q21.22	LIN54	rs13111599-A	0.262835	4E-8		0.0122518	[0.0079-0.0166] unit decrease	Affymetrix [NR] (imputed)	N
1225	chr4	83925894	83925895	rs6823199	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	4q21.22	LIN54	rs6823199-T	0.7444	4E-14		0.1526	[0.11-0.19] unit increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1225	chr4	83929236	83929237	rs13114988	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q21.22	NR	rs13114988-C	0.191489	1E-30				Affymetrix, Illumina [24332387] (imputed)	N
1225	chr4	83934558	83934558	rs3079736	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	4q21.22		rs3079736-AAG	NR	7E-9		0.0147	[0.0098-0.0196] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
1225	chr4	83935759	83935760	rs11099565	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q21.22	NR	rs11099565-T	0.810788	4E-10				Affymetrix, Illumina [24246363] (imputed)	N
1225	chr4	83938721	83938722	rs28528763	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	4q21.22	LIN54	rs28528763-A	0.271216	7E-12		0.017240904	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1225	chr4	83939308	83939309	rs28450349	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q21.22	NR	rs28450349-G	0.810824	4E-12				Affymetrix, Illumina [20825802] (imputed)	N
1225	chr4	83940916	83940917	rs13131243	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	153,512 East Asian ancestry individuals	NA	4q21.22		rs13131243-A	0.210763	3E-10		0.0240715	[0.017-0.032] unit decrease	Illumina [13479135] (imputed)	N
1225	chr4	83941369	83941370	rs1563646	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	4q21.22	NR	rs1563646-A	0.818452	6E-12		0.017249	[0.012-0.022] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
1225	chr4	83947556	83947557	rs13141124	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	4q21.22		rs13141124-A	NR	1E-11		0.0165	[0.012-0.021] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1225	chr4	83947556	83947557	rs13141124	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	4q21.22		rs13141124-A	0.180693	7E-11		0.018801352	[0.013-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1225	chr4	83947556	83947557	rs13141124	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	4q21.22		rs13141124-?	NR	1E-15				NR [~ 8900000] (imputed)	N
1225	chr4	83955106	83955107	rs12511815	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	4q21.22		rs12511815-?	NR	1E-14				NR [~ 8900000] (imputed)	N
1225	chr4	83955641	83955642	rs4693545	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	4q21.22	NR	rs4693545-G	0.811122	3E-10		0.015043	[0.01-0.02] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1225	chr4	84000124	84000125	rs9991694	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder in trauma-unexposed individuals	9,487 European ancestry cases, 39,677 European ancestry controls	NA	4q21.22	NR	rs9991694-C	0.766787	5E-7		1.161	[1.1-1.22]	Affymetrix [7791636] (imputed)	N
1225	chr4	84005376	84005377	rs11732191	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	4q21.22	NR	rs11732191-?	NR	8E-24		0.3	[0.22-0.38] unit decrease	Illumina [at least 830937] (imputed)	N
1226	chr4	84054210	84054211	rs9307816	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	4q21.22	COPS4	rs9307816-?	NR	6E-7	(uridine)	0.32942218	[0.2-0.46] unit increase	Affymetrix [at least 2500000] (imputed)	N
1226	chr4	84124439	84124440	rs4591595	27958378	Floyd JS	2016-12-13	Pharmacogenomics J	Large-scale pharmacogenomic study of sulfonylureas and the QT, JT and QRS intervals: CHARGE Pharmacogenomics Working Group.	QRS interval (sulfonylurea treatment interaction)	2,095 European ancestry exposed individuals, 42,907 European ancestry unexposed individuals, 1,167 African American exposed individuals, 10,564 African American unexposed individuals, 794 Hispanic/Latino American exposed individuals, 14,330 Hispanic/Latino American unexposed individuals	NA	4q21.23	PLAC8, COQ2	rs4591595-?	NR	3E-7	(EA)	2.8	[1.62-3.98] ms decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1226	chr4	84142743	84142744	rs11099582	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	4q21.23	NR	rs11099582-A	0.266	1E-9		1.103	[1.07-1.13]	Illumina [11270530] (imputed)	N
1227	chr4	84151426	84151427	rs6535445	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD62L- plasmacytoid Dendritic Cell %Dendritic Cell	3,410 Sardinian (founder/genetic isolate) ancestry individuals	NA	4q21.23		rs6535445-C	0.34393	1E-31		0.3029	[0.25-0.35] unit decrease	Illumina [18351549] (imputed)	N
1227	chr4	84151426	84151427	rs6535445	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	4q21.23	RP11-576N17.5	rs6535445-C	0.341521	3E-38		0.030329242	[0.026-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
1227	chr4	84152972	84152973	rs13122305	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	4q21.23	RP11-576N17.5	rs13122305-A	0.6576	2E-11		0.0253314	[0.018-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1227	chr4	84157442	84157443	rs2903918	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	SSC-A on plasmacytoid Dendritic Cell	2,872 Sardinian (founder/genetic isolate) ancestry individuals	NA	4q21.23		rs2903918-G	0.34077	4E-14		0.2195	[0.16-0.28] unit decrease	Illumina [17926607] (imputed)	N
1227	chr4	84159218	84159219	rs4566648	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	4q21.23		rs4566648-T	0.658	1E-12				Affymetrix [10369434] (imputed)	N
1227	chr4	84159218	84159219	rs4566648	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	4q21.23		rs4566648-T	0.658	1E-12				Affymetrix [10369434] (imputed)	N
1227	chr4	84159218	84159219	rs4566648	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	4q21.23	RP11-576N17.5	rs4566648-G	0.341657	2E-32		0.027750729	[0.023-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
1227	chr4	84159218	84159219	rs4566648	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	4q21.23	RP11-576N17.5	rs4566648-G	0.3416	7E-10		0.02324339	[0.016-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1227	chr4	84161923	84161923	rs398092556	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD80 on plasmacytoid Dendritic Cell	2,871 Sardinian (founder/genetic isolate) ancestry individuals	NA	4q21.23		rs398092556-CT	0.29574	7E-21		0.2878	[0.23-0.35] unit decrease	Illumina [17926466] (imputed)	N
1227	chr4	84161923	84161923	rs398092556	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD80 on CD62L+ plasmacytoid Dendritic Cell	2,871 Sardinian (founder/genetic isolate) ancestry individuals	NA	4q21.23		rs398092556-CT	0.29574	2E-20		0.2845	[0.22-0.34] unit decrease	Illumina [17926466] (imputed)	N
1227	chr4	84161923	84161923	rs398092556	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD62L- plasmacytoid Dendritic Cell Absolute Count	3,374 Sardinian (founder/genetic isolate) ancestry individuals	NA	4q21.23		rs398092556-CT	0.29999	5E-28		0.289	[0.24-0.34] unit decrease	Illumina [18332528] (imputed)	N
1227	chr4	84161923	84161923	rs398092556	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD123 on plasmacytoid Dendritic Cell	2,872 Sardinian (founder/genetic isolate) ancestry individuals	NA	4q21.23		rs398092556-CT	0.29564	3E-23		0.3056	[0.25-0.37] unit decrease	Illumina [17926607] (imputed)	N
1227	chr4	84161923	84161923	rs398092556	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD123 on CD62L+ plasmacytoid Dendritic Cell	2,872 Sardinian (founder/genetic isolate) ancestry individuals	NA	4q21.23		rs398092556-CT	0.29564	9E-23		0.3021	[0.24-0.36] unit decrease	Illumina [17926607] (imputed)	N
1227	chr4	84162177	84162178	rs76294234	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	4q21.23	intergenic	rs76294234-?	NR	1E-6		0.294	[0.18-0.41] unit increase	Illumina [at least 13000000] (imputed)	N
1227	chr4	84190188	84190189	rs74353568	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	4q21.23	COQ2	rs74353568-G	0.0841435731877065	2E-6	(G_Acidaminococcus_HB)	0.584948	[0.34-0.83] unit increase	Illumina [7711310] (imputed)	N
1227	chr4	84205461	84205462	rs116663439	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	4q21.23	NR	rs116663439-?	NR	2E-7		0.12419	[0.077-0.171] unit increase	Affymetrix [805426] (imputed)	N
1227	chr4	84230877	84230878	rs11732810	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q21.23	NR	rs11732810-G	0.7725	9E-11	(GCH1, 11185_145_3)	0.19100158	[0.13-0.25] unit increase	Illumina [> 1000000] (imputed)	N
1227	chr4	84230877	84230878	rs11732810	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q21.23	NR	rs11732810-G	0.7725	8E-78	(HPSE, 5604_30_3)	0.5408048	[0.49-0.6] unit increase	Illumina [> 1000000] (imputed)	N
1227	chr4	84232103	84232104	rs6535455	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HPSE	5,365 Icelandic ancestry individuals	NA	4q21.23		rs6535455-T	0.2225	2E-133		0.53059	[0.49-0.57] unit decrease	Illumina [7506463] (imputed)	N
1227	chr4	84239095	84239096	rs4693078	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GCH1	5,364 Icelandic ancestry individuals	NA	4q21.23		rs4693078-G	0.2206	2E-21		0.212683	[0.17-0.26] unit decrease	Illumina [7506463] (imputed)	N
1228	chr4	84312758	84312759	rs10004897	30954325	Kamboh MI	2019-03-11	Neurobiol Aging	Population-based genome-wide association study of cognitive decline in older adults free of dementia: identification of a novel locus for the attention domain.	Age-related cognitive decline (executive function) (slope of z-scores)	1,145 European ancestry individuals	NA	4q21.23	HPSE, HELQ	rs10004897-A	0.17	4E-6		0.25	unit increase	Illumina [5600000] (imputed)	N
1228	chr4	84351152	84351153	rs4235062	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	4q21.23	NR	rs4235062-G	0.48	5E-6		1.07	[1.03-1.11]	Illumina [8468885] (imputed)	N
1228	chr4	84364750	84364751	rs7665103	29773799	Horikoshi M	2018-05-17	Nat Commun	Elucidating the genetic architecture of reproductive ageing in the Japanese population.	Menopause (age at onset)	43,861 Japanese ancestry women	32,545 European ancestry women	4q21.23	HELQ	rs7665103-G	0.62	4E-8	(japanese)	0.15	[0.091-0.209] year increase	Illumina [at least 532488] (imputed)	N
1228	chr4	84373621	84373622	rs4693089	29773799	Horikoshi M	2018-05-17	Nat Commun	Elucidating the genetic architecture of reproductive ageing in the Japanese population.	Menarche (age at onset)	67,029 Japanese ancestry women	73,397 European ancestry women	4q21.23	NR	rs4693089-A	0.3826	7E-8	(japanese)	0.144	[0.091-0.197] year decrease	Illumina [at least 532488] (imputed)	N
1228	chr4	84373621	84373622	rs4693089	26414677	Day FR	2015-11-01	Nat Genet	Large-scale genomic analyses link reproductive aging to hypothalamic signaling, breast cancer susceptibility and BRCA1-mediated DNA repair.	Menopause (age at onset)	up to 69,626 European ancestry women	NA	4q21.23	HELQ, FAM175A	rs4693089-A	0.51	9E-23		0.2	[0.16-0.24] years decrease	Affymetrix, Illumina [~ 2600000] (imputed)	N
1228	chr4	84373621	84373622	rs4693089	22267201	Stolk L	2012-01-22	Nat Genet	Meta-analyses identify 13 loci associated with age at menopause and highlight DNA repair and immune pathways.	Menopause (age at onset)	38,968 European ancestry female individuals	Up to 14,435 European ancestry female individuals	4q21.23	HELQ	rs4693089-G	0.486	2E-19		0.228	[0.18-0.28] years increase	Affymetrix, Illumina [2551160] (imputed)	N
1228	chr4	84374479	84374480	rs1494961	21437268	McKay JD	2011-03-17	PLoS Genet	A genome-wide association study of upper aerodigestive tract cancers conducted within the INHANCE consortium.	Oral cavity and pharyngeal cancer	2,091 European ancestry cases, 8,334 European ancestry controls	6,574 European ancestry cases, 7,892 European ancestry controls	4q21.23	HEL308, ADH, FAM175A	rs1494961-C	0.49	1E-8		1.12	[1.08-1.17]	Illumina [294620]	N
1228	chr4	84400329	84400330	rs1565909	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Age at menopause	approximately 143,000 European ancestry individuals	NA	4q21.23		rs1565909-?	NR	9E-45				NR [~ 8900000] (imputed)	N
1229	chr4	84469851	84469852	rs11731267	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	4q21.23	GPAT3	rs11731267-C	0.869049	6E-13		0.0197475	[0.014-0.025] unit decrease	NR [13737936] (imputed)	N
1229	chr4	84469851	84469852	rs11731267	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	4q21.23		rs11731267-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1229	chr4	84469851	84469852	rs11731267	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	4q21.23		rs11731267-?	NR	3E-12		0.0207114	[0.015-0.027] unit decrease	Affymetrix [20259828] (imputed)	N
1229	chr4	84470832	84470833	rs1963045	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	4q21.23	NR	rs1963045-C	0.4688	2E-6	(EA)	0.0296	[0.017-0.042] unit increase	Illumina [~ 11800000] (imputed)	N
1229	chr4	84478141	84478142	rs6812240	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	4q21.23	CCDC98	rs6812240-?	NR	9E-6	(ornithine)	0.18351218	[0.1-0.26] unit increase	Affymetrix [at least 2500000] (imputed)	N
1230	chr4	84621328	84621329	rs56054767	30804558	Grove J	2019-02-25	Nat Genet	Identification of common genetic risk variants for autism spectrum disorder.	Autism spectrum disorder	18,381 European ancestry cases, 27,969 European ancestry controls	2,119 European ancestry cases, 142,379 European ancestry controls	4q21.23	Intergenic	rs56054767-C	0.113	4E-6		1.11	[NR]	Illumina [9112387] (imputed)	N
1231	chr4	84721813	84721814	rs4693646	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	4q21.23	MAG1, AGPAT9	rs4693646-A	0.407	9E-6	(IGF1 free )	0.03	[NR] ng/mL increase	Illumina [899892]	N
1232	chr4	84823286	84823287	rs11735575	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Blautia)	1,068 Japanese ancestry individuals	NA	4q21.23	RP11-8L2.1	rs11735575-G	0.16	3E-6	(female)	0.131	[0.076-0.186] unit increase	Illumina [6380737] (imputed)	N
1232	chr4	84901817	84901818	rs11099631	33594131	Donati G	2021-02-16	Sci Rep	Evidence for specificity of polygenic contributions to attainment in English, maths and science during adolescence.	Academic attainment (maths)	6,017 European ancestry adolescents	NA	4q21.23	NR	rs11099631-T	NR	9E-6		0.322	[0.18-0.46] unit decrease	Illumina [6319684] (imputed)	N
1233	chr4	84952714	84952715	rs1997474	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Pursuit maintenance gain	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	4q21.23	LOC101928978	rs1997474-T	0.06	7E-6	(EA)			Illumina [4404269] (imputed)	N
1234	chr4	85168055	85168056	rs141903557	31417091	Kou I	2019-08-15	Nat Commun	Genome-wide association study identifies 14 previously unreported susceptibility loci for adolescent idiopathic scoliosis in Japanese.	Adolescent idiopathic scoliosis	5,327 Japanese ancestry cases, 73,884 Japanese ancestry controls	NA	4q21.23	LOC101928978	rs141903557-C	0.047	1E-10		1.33	[1.22-1.45]	Illumina [9332516] (imputed)	N
1235	chr4	85285382	85285383	rs181684195	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	4q21.23	RP11-42A4.1	rs181684195-T	0.0016	5E-6		1.6041	[0.92-2.29] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1235	chr4	85290666	85290667	rs6844847	31417091	Kou I	2019-08-15	Nat Commun	Genome-wide association study identifies 14 previously unreported susceptibility loci for adolescent idiopathic scoliosis in Japanese.	Adolescent idiopathic scoliosis	5,004 Japanese ancestry female cases, 33,679 Japanese ancestry female controls	NA	4q21.23	LOC101928978/NKX6-1	rs6844847-T	0.196928	2E-8		1.17	[1.11-1.23]	Illumina [9332516] (imputed)	N
1235	chr4	85297953	85297954	rs117233795	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	4q21.23	NR	rs117233795-C	0.9555	1E-12		0.1426	[0.1-0.18] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1235	chr4	85300314	85300315	rs117834099	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	46,511 Asian ancestry cases, 169,776 Asian ancestry controls	NA	4q21.23	NR	rs117834099-G	0.9549	1E-11		0.1509	[0.11-0.19] unit increase	Affymetrix, Illumina [1077427] (imputed)	N
1235	chr4	85301869	85301870	rs201597274	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	4q21.23		rs201597274-C	0.045822935	5E-11		0.874661	[0.840425132-0.910291608]	Illumina [8919992] (imputed)	N
1235	chr4	85301869	85301870	rs201597274	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	4q21.23	AGPAT9, NKX6-1	rs201597274-T	0.96	2E-12		1.17	1.12-1.23	Illumina [12557761] (imputed)	N
1236	chr4	85339617	85339618	rs117624659	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	4q21.23		rs117624659-C	0.03334067	3E-13		0.19442648	[0.14-0.25] unit decrease	Illumina [13429769] (imputed)	N
1236	chr4	85339617	85339618	rs117624659	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	4q21.23		rs117624659-C	NR	3E-15		0.1531	[0.12-0.19] unit decrease	Affymetrix, Illumina [25845091] (imputed)	N
1236	chr4	85339617	85339618	rs117624659	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	4q21.23		rs117624659-C	0.032011911	2E-12		0.20258221	[0.15-0.26] unit decrease	Illumina [13134967] (imputed)	N
1236	chr4	85339617	85339618	rs117624659	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	4q21.23		rs117624659-C	NR	2E-12		0.2026	[0.15-0.26] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1236	chr4	85339617	85339618	rs117624659	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	4q21.23	NKX6-1	rs117624659-T	0.977	2E-16		1.23	[1.17-1.29]	Affymetrix, Illumina [11800000] (imputed)	N
1236	chr4	85343177	85343178	rs147602346	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Melanoma	6,777 European ancestry cases, 410,350 European ancestry controls	NA	4q21.23		rs147602346-G	0.01341	3E-7		1.4295926	NR	Affymetrix [7846216] (imputed)	N
1236	chr4	85384068	85384069	rs987949	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	4q21.23	NR	rs987949-G	0.9605	6E-9		0.153	[0.1-0.2] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
1237	chr4	85577540	85577541	rs13152543	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cerebral amyloid deposition (PET imaging)	up to 883 European and other ancestry individuals	NA	4q21.23	CDS1, WDFY3	rs13152543-A	0.01	3E-6	(correcting APOE e4)	0.2007	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
1238	chr4	85596235	85596236	rs76117213	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cerebral amyloid deposition (PET imaging)	up to 883 European and other ancestry individuals	NA	4q21.23	WDFY3	rs76117213-G	0.01	1E-7		0.2623	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
1238	chr4	85688414	85688415	rs201028157	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	4q21.23	WDFY3	rs201028157-A	0.380721	4E-9		0.013622988	[0.0091-0.0181] unit decrease	Affymetrix [93095623] (imputed)	N
1239	chr4	85732168	85732169	rs6847067	27749845	Lesseur C	2016-10-17	Nat Genet	Genome-wide association analyses identify new susceptibility loci for oral cavity and pharyngeal cancer.	Oropharynx cancer	2,506 European ancestry cases, 135 cases, 5,984 European ancestry controls, 601 controls	NA	4q21.23	WDFY3	rs6847067-A	0.404213487423565	1E-6		1.1861		Illumina [7574753] (imputed)	N
1239	chr4	85827191	85827192	rs12501332	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	4q21.23	NR	rs12501332-?		2E-8	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
1241	chr4	86019235	86019236	rs76377494	33987465	Alfradique-Dunham I	2021-01-28	Neurol Genet	Genome-Wide Association Study Meta-Analysis for Parkinson Disease Motor Subtypes.	Parkinson's disease motor subtype (tremor to postural instability/gait difficulty score ratio)	3,212 European ancestry individuals	NA	4q21.23	WDFY3-AS2	rs76377494-T	0.07	2E-6		0.22	[0.12-0.32] unit decrease	Illumina [14638245] (imputed)	N
1242	chr4	86129615	86129616	rs7691216	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	4q21.23	NR	rs7691216-G	0.155663414959929	7E-6	(IGP15)	0.1881	[0.11-0.27] unit decrease	Illumina [~ 2500000] (imputed)	N
1242	chr4	86136863	86136864	rs10011717	30679421	Felsky D	2019-01-24	Nat Commun	Neuropathological correlates and genetic architecture of microglial activation in elderly human brain.	Proportion of activated microglia (inferior temporal cortex)	219 individuals	NA	4q21.23	intergenic	rs10011717-A	0.3774	6E-6		0.0282	NR unit decrease	NR [NR] (imputed)	N
1243	chr4	86280637	86280638	rs342958	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	4q21.23	C4orf12, ARHGAP24	rs342958-G	0.001	1E-6		34.08	[3.52-329.69]	Illumina [1556551]	N
1243	chr4	86337027	86337028	rs744597	29030101	Asai Y	2017-10-10	J Allergy Clin Immunol	Genome-wide association study and meta-analysis in multiple populations identifies new loci for peanut allergy and establishes C11orf30/EMSY as a genetic risk factor for food allergy.	Peanut allergy	1,068 European ancestry cases, 3,327 European ancestry controls, 514 cases, 2,119 controls	NA	4q21.23	ARHGAP24	rs744597-?		2E-6				Illumina [7830195] (imputed)	N
1243	chr4	86353704	86353705	rs115496994	30276832	Edwards AC	2018-10-01	Alcohol Clin Exp Res	Meta-Analysis of Genetic Influences on Initial Alcohol Sensitivity.	Initial alcohol sensitivity	6,039 European ancestry individuals, 892 African ancestry individuals, 408 American ancestry individuals	NA	4q21.23	ARHGAP24	rs115496994-?	NR	7E-6				Affymetrix, Illumina [15642250] (imputed)	N
1244	chr4	86378067	86378068	rs111260369	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Monokine induced by gamma interferon levels	3,685 Finnish ancestry individuals	NA	4q21.23	NR	rs111260369-T	NR	6E-6		0.2837	[0.16-0.41] SD units decrease	NR [10700000] (imputed)	N
1244	chr4	86416553	86416554	rs111882035	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Logical memory (delayed recall) in mild cognitive impairment	581 European ancestry mild cognitive impairment cases	NA	4q21.23	ARHGAP24, WDFY3-AS2, MIR4451	rs111882035-G	0.02	3E-8		0.93	[0.6-1.26] unit decrease	Illumina [7992243] (imputed)	N
1244	chr4	86439657	86439658	rs116267187	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		ARHGAP24	rs116267187-?	NR	8E-10	(male)	1.80323	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1244	chr4	86496829	86496830	rs552283803	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	Height	19,965 British ancestry individuals from 6863 families.	NA	4q21.23	ARHGAP24	rs552283803-C	0.0016	4E-8		0.05250504	[0.034-0.071] m decrease	Illumina [24111857] (imputed)	N
1244	chr4	86498496	86498497	rs7683928	32579418	Maukonen M	2020-06-24	J Biol Rhythms	Genetic Associations of Chronotype in the Finnish General Population.	Evening vs. morning chronotype (sMEQ score)	2,364 Finnish ancestry evening individuals, 5,072 Finnish ancestry morning individuals	NA	4q21.23	ARHGAP24	rs7683928-G	NR	8E-6		1.19645	[1.10589-1.29442]	Illumina [5842835] (imputed)	N
1245	chr4	86601091	86601092	rs1482099	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	4q21.23		rs1482099-?	NR	6E-30				NR [~ 8900000] (imputed)	N
1245	chr4	86601630	86601631	rs1026872	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	4q21.23	ARHGAP24	rs1026872-?	NR	1E-13		1.0597711	NR	Affymetrix [9154080] (imputed)	N
1246	chr4	86641148	86641149	rs7692808	32602732	Baldassari AR	2020-06-30	Circ Genom Precis Med	Multi-ethnic Genome-wide Association Study of Decomposed Cardioelectric Phenotypes Illustrates Strategies to Identify and Characterize Evidence of Shared Genetic Effects for Complex Traits.	Electrocardiographic traits (multivariate)	17,873 European ancestry individuals, 12,749 Hispanic individuals, 5,408 African American individuals, 315 Chinese-American individuals	NA	4q21.23	ARHGAP24	rs7692808-?	NR	1E-11				Affymetrix, Illumina [22000000] (imputed)	N
1246	chr4	86641148	86641149	rs7692808	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	PR interval	3,360 African American individuals, 13,702 Hispanic/Latino individuals, 129 Asian ancestry individuals, 231 Native American ancestry individuals	NA	4q21.23	NR	rs7692808-?	NR	6E-14		1.814801	[1.34-2.29] unit increase	Illumina [26703325] (imputed)	N
1246	chr4	86641148	86641149	rs7692808	20062060	Pfeufer A	2010-01-10	Nat Genet	Genome-wide association study of PR interval.	PR interval	28,517 European ancestry individuals	NA	4q21.23	ARHGAP24	rs7692808-A	0.31	6E-20		2.01	[1.58-2.44] ms decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1246	chr4	86651463	86651464	rs7660702	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	PR interval	3,360 African American individuals, 13,702 Hispanic/Latino individuals, 129 Asian ancestry individuals, 231 Native American ancestry individuals	NA	4q21.23	NR	rs7660702-?	NR	3E-10		1.46842	[1.01-1.93] unit decrease	Illumina [26703325] (imputed)	N
1246	chr4	86651463	86651464	rs7660702	20062063	Holm H	2010-01-10	Nat Genet	Several common variants modulate heart rate, PR interval and QRS duration.	Electrocardiographic traits	Up to 12,670 European ancestry individuals	Up to 10,352 European ancestry individuals	4q21.23	ARHGAP24	rs7660702-T	0.74	3E-17	(PR interval)	8.46	[6.50-10.42] % s.d. increase	Illumina [306060]	N
1246	chr4	86657419	86657420	rs2624021	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	4q21.23	ARHGAP24	rs2624021-T	0.6791	2E-178		1.9786	[1.84-2.11] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1246	chr4	86657419	86657420	rs2624021	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	4q21.23	ARHGAP24	rs2624021-T	0.2367	1E-6	(AA)	2.4314	[1.45-3.41] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1246	chr4	86661342	86661343	rs71599425	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	4q21.23	NR	rs71599425-A	0.0382	6E-6	(EA)	0.0797	[0.045-0.114] unit decrease	Illumina [~ 11800000] (imputed)	N
1246	chr4	86663054	86663055	rs343849	30046033	van Setten J	2018-07-25	Nat Commun	PR interval genome-wide association meta-analysis identifies 50 loci associated with atrial and atrioventricular electrical activity.	PR interval	92,340 European ancestry individuals	NA	4q21.23	ARHGAP24	rs343849-A	0.3	3E-61		2.1	[1.85-2.35] ms decrease	Affymetrix, Illumina [2712613] (imputed)	N
1246	chr4	86674198	86674199	rs13137008	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	PR interval	3,360 African American individuals, 13,702 Hispanic/Latino individuals, 129 Asian ancestry individuals, 231 Native American ancestry individuals	NA	4q21.23	NR	rs13137008-?	NR	5E-15		1.877909	[1.41-2.35] unit increase	Illumina [26703325] (imputed)	N
1246	chr4	86674198	86674199	rs13137008	24850809	Verweij N	2014-05-21	Circ Cardiovasc Genet	Genetic determinants of P wave duration and PR segment.	PR segment duration	16,468 European ancestry individuals	NA	4q21.23	ARHGAP24	rs13137008-T	0.697	1E-14		1.764	[1.32-2.21] unit increase	Illumina [2300000] (imputed)	N
1246	chr4	86681216	86681216	rs199745043	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	4q21.23	ARHGAP24	rs199745043-AG	0.321763	9E-21	(-80 ms)	0.0579752	[0.046-0.07] unit increase	Affymetrix [10000000] (imputed)	N
1246	chr4	86681216	86681216	rs199745043	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	4q21.23	ARHGAP24	rs199745043-AG	0.321763	8E-55	(-110 ms)	0.0938002	[0.082-0.106] unit increase	Affymetrix [10000000] (imputed)	N
1246	chr4	86681216	86681216	rs199745043	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	4q21.23	ARHGAP24	rs199745043-AG	0.321763	8E-54	(-100 ms)	0.0938956	[0.082-0.106] unit increase	Affymetrix [10000000] (imputed)	N
1246	chr4	86681216	86681216	rs199745043	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	4q21.23	ARHGAP24	rs199745043-AG	0.321763	7E-36	(-88 ms)	0.0761197	[0.064-0.088] unit increase	Affymetrix [10000000] (imputed)	N
1246	chr4	86681216	86681216	rs199745043	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	4q21.23	ARHGAP24	rs199745043-AG	0.321763	7E-13	(-76 ms)	0.0440473	[0.032-0.056] unit increase	Affymetrix [10000000] (imputed)	N
1246	chr4	86681216	86681216	rs199745043	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	4q21.23	ARHGAP24	rs199745043-AG	0.321763	7E-12	(-206 ms)	0.0424599	[0.03-0.055] unit decrease	Affymetrix [10000000] (imputed)	N
1246	chr4	86681216	86681216	rs199745043	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	4q21.23	ARHGAP24	rs199745043-AG	0.321763	6E-56	(-108 ms)	0.0955415	[0.084-0.108] unit increase	Affymetrix [10000000] (imputed)	N
1246	chr4	86681216	86681216	rs199745043	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	4q21.23	ARHGAP24	rs199745043-AG	0.321763	6E-26	(-82 ms)	0.0650779	[0.053-0.077] unit increase	Affymetrix [10000000] (imputed)	N
1246	chr4	86681216	86681216	rs199745043	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	4q21.23	ARHGAP24	rs199745043-AG	0.321763	5E-55	(-104 ms)	0.0938928	[0.082-0.106] unit increase	Affymetrix [10000000] (imputed)	N
1246	chr4	86681216	86681216	rs199745043	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	4q21.23	ARHGAP24	rs199745043-AG	0.321763	5E-51	(-112 ms)	0.0908493	[0.079-0.103] unit increase	Affymetrix [10000000] (imputed)	N
1246	chr4	86681216	86681216	rs199745043	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	4q21.23	ARHGAP24	rs199745043-AG	0.321763	5E-40	(-90 ms)	0.0804937	[0.068-0.093] unit increase	Affymetrix [10000000] (imputed)	N
1246	chr4	86681216	86681216	rs199745043	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	4q21.23	ARHGAP24	rs199745043-AG	0.321763	3E-50	(-96 ms)	0.0907208	[0.079-0.103] unit increase	Affymetrix [10000000] (imputed)	N
1246	chr4	86681216	86681216	rs199745043	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	4q21.23	ARHGAP24	rs199745043-AG	0.321763	3E-45	(-92 ms)	0.0853523	[0.073-0.097] unit increase	Affymetrix [10000000] (imputed)	N
1246	chr4	86681216	86681216	rs199745043	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	4q21.23	ARHGAP24	rs199745043-AG	0.321763	3E-12	(-202 ms)	0.0432726	[0.031-0.055] unit decrease	Affymetrix [10000000] (imputed)	N
1246	chr4	86681216	86681216	rs199745043	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	4q21.23	ARHGAP24	rs199745043-AG	0.321763	2E-49	(-94 ms)	0.0894543	[0.077-0.102] unit increase	Affymetrix [10000000] (imputed)	N
1246	chr4	86681216	86681216	rs199745043	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	4q21.23	ARHGAP24	rs199745043-AG	0.321763	2E-31	(-86 ms)	0.0709943	[0.059-0.083] unit increase	Affymetrix [10000000] (imputed)	N
1246	chr4	86681216	86681216	rs199745043	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	4q21.23	ARHGAP24	rs199745043-AG	0.321763	2E-28	(-84 ms)	0.0679398	[0.056-0.08] unit increase	Affymetrix [10000000] (imputed)	N
1246	chr4	86681216	86681216	rs199745043	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	4q21.23	ARHGAP24	rs199745043-AG	0.321763	2E-15	(-78 ms)	0.0487146	[0.037-0.061] unit increase	Affymetrix [10000000] (imputed)	N
1246	chr4	86681216	86681216	rs199745043	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	4q21.23	ARHGAP24	rs199745043-AG	0.321763	2E-13	(-200 ms)	0.0453661	[0.033-0.057] unit decrease	Affymetrix [10000000] (imputed)	N
1246	chr4	86681216	86681216	rs199745043	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	4q21.23	ARHGAP24	rs199745043-AG	0.321763	1E-55	(-106 ms)	0.0953429	[0.083-0.107] unit increase	Affymetrix [10000000] (imputed)	N
1246	chr4	86681216	86681216	rs199745043	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	4q21.23	ARHGAP24	rs199745043-AG	0.321763	1E-51	(-98 ms)	0.0919426	[0.08-0.104] unit increase	Affymetrix [10000000] (imputed)	N
1246	chr4	86681216	86681216	rs199745043	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	4q21.23	ARHGAP24	rs199745043-AG	0.321763	1E-19	(-190 ms)	0.0550745	[0.043-0.067] unit decrease	Affymetrix [10000000] (imputed)	N
1246	chr4	86681216	86681216	rs199745043	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	4q21.23	ARHGAP24	rs199745043-AG	0.321763	1E-11	(-208 ms)	0.0421184	[0.03-0.054] unit decrease	Affymetrix [10000000] (imputed)	N
1246	chr4	86681216	86681216	rs199745043	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	4q21.23	ARHGAP24	rs199745043-AG	0.321763	1E-11	(-204 ms)	0.0419803	[0.03-0.054] unit decrease	Affymetrix [10000000] (imputed)	N
1246	chr4	86681216	86681216	rs199745043	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	4q21.23	ARHGAP24	rs199745043-AG	0.321763	1E-10	(-74 ms)	0.0400224	[0.028-0.052] unit increase	Affymetrix [10000000] (imputed)	N
1246	chr4	86682967	86682968	rs13111293	30679814	van Setten J	2019-01-24	Eur J Hum Genet	Genome-wide association meta-analysis of 30,000 samples identifies seven novel loci for quantitative ECG traits.	PR interval	2,370 Erasmus Rucphen Family (founder/genetic isolate) individuals, 29,325 European ancestry individuals	391 Carlantino (founder/genetic isolate) individuals, 981 Friuli Venezia Giulia (founder/genetic isolate) individuals, 31,033 European ancestry individuals, 2,070 African American individuals	4q21.23	ARHGAP24	rs13111293-T	0.703	6E-21		1.881	[1.49-2.27] unit increase	Affymetrix, Illumina [at least 19000000] (imputed)	N
1246	chr4	86683559	86683560	rs11732231	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	PR interval	3,360 African American individuals, 13,702 Hispanic/Latino individuals, 129 Asian ancestry individuals, 231 Native American ancestry individuals	NA	4q21.23	NR	rs11732231-?	NR	7E-13		1.767805	[1.29-2.25] unit increase	Illumina [26703325] (imputed)	N
1246	chr4	86683559	86683560	rs11732231	23139255	Butler AM	2012-11-08	Circ Cardiovasc Genet	Novel loci associated with PR interval in a genome-wide association study of 10 African American cohorts.	PR interval	13,415 African American individuals	NA	4q21.23	ARHGAP24	rs11732231-C	0.23	3E-9		2.28	[1.52-3.04] unit increase	Affymetrix, Illumina [2845108] (imputed)	N
1246	chr4	86689575	86689576	rs117824133	29213071	Mendez-Giraldez R	2017-12-06	Sci Rep	GWAS of the electrocardiographic QT interval in Hispanics/Latinos generalizes previously identified loci and identifies population-specific signals.	QT interval	15,997 Hispanic/Latino individuals	NA	4q21.23	ARHGAP24	rs117824133-A	0.01	2E-6		14.82	[8.76-20.88] ms decrease	Affymetrix, Illumina [up to 17586686] (imputed)	N
1246	chr4	86693316	86693317	rs16995986	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	4q21.23	ARHGAP24, C4orf12, MAPK10	rs16995986-G	0.001	1E-6		34.08	[3.52-329.69]	Illumina [1556551]	N
1246	chr4	86699725	86699726	rs13105921	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	4q21.23	ARHGAP24	rs13105921-A	0.3987	5E-12	(Hispanic/Latino)	2.0123	[1.44-2.58] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1246	chr4	86699725	86699726	rs13105921	29127183	Seyerle AA	2017-11-10	Heart	Genome-wide association study of PR interval in Hispanics/Latinos identifies novel locus at ID2.	PR interval	14,756 Hispanic individuals	4,296 European ancestry individuals, 3,763 African American individuals, 6,805 East Asian ancestry individuals	4q21.23	ARHGAP24	rs13105921-A	0.41	6E-11	(Hispanic)	1.76	[1.23-2.29] ms increase	Affymetrix, Illumina [18828993] (imputed)	N
1246	chr4	86715311	86715312	rs7687906	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	4q21.23	ARHGAP24	rs7687906-C	0.217	5E-6	(Amylin )	0.03	[NR] pM increase	Illumina [899892]	N
1246	chr4	86715669	86715670	rs2014912	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Systolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	4q21.23	ARHGAP24	rs2014912-C	0.853	7E-10	(EA, initial)	0.63	[0.43-0.83] unit decrease	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
1246	chr4	86715669	86715670	rs2014912	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Pulse pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	4q21.23	ARHGAP24	rs2014912-C	0.853	4E-10	(EA, initial)	0.418	[0.29-0.55] unit decrease	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
1246	chr4	86715669	86715670	rs2014912	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	4q21.23	ARHGAP24	rs2014912-T		4E-7		0.269	unit increase	Affymetrix [at least 2696785] (imputed)	N
1246	chr4	86715669	86715670	rs2014912	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	4q21.23	ARHGAP24	rs2014912-T		6E-8		0.191	unit increase	Affymetrix [at least 2696785] (imputed)	N
1246	chr4	86715669	86715670	rs2014912	26390057	Kato N	2015-09-21	Nat Genet	Trans-ancestry genome-wide association study identifies 12 genetic loci influencing blood pressure and implicates a role for DNA methylation.	Systolic blood pressure	31,516 East Asian ancestry individuals,  35,352 European ancestry individuals, 33,126 South Asian ancestry individuals	87,205 individuals, 48,268 East Asian ancestry individuals, 68,456 European ancestry individuals and 16,328 South Asian ancestry individuals	4q21.23	ARHGAP24	rs2014912-T	0.164597400025986	5E-17		0.61964464	[0.48-0.76] mmHg increase	Affymetrix, Illumina, Perlegen [2127883] (imputed)	N
1246	chr4	86719164	86719165	rs17010957	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	4q21.23	ARHGAP24	rs17010957-T	0.8515	6E-20		0.0245	[0.019-0.03] unit increase	Affymetrix [18391927] (imputed)	N
1246	chr4	86719164	86719165	rs17010957	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	4q21.23	ARHGAP24	rs17010957-T	0.852799	2E-32		0.0310197	[0.026-0.036] unit decrease	NR [13737936] (imputed)	N
1246	chr4	86719164	86719165	rs17010957	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	4q21.23		rs17010957-?	NR	1E-20				NR [~ 8900000] (imputed)	N
1246	chr4	86719164	86719165	rs17010957	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	4q21.23	NR	rs17010957-T	0.7712	3E-8	(East Asian)	0.4189	[0.27-0.57] unit decrease	Illumina [6200000] (imputed)	N
1246	chr4	86719164	86719165	rs17010957	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	4q21.23		rs17010957-?	NR	1E-29		0.0316563	[0.026-0.037] unit decrease	Affymetrix [20259828] (imputed)	N
1246	chr4	86719164	86719165	rs17010957	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure (cigarette smoking interaction)	80,552 European ancestry individuals, 27,118 African individuals, 13,438 Asian individuals, 8,805 Hispanic individuals	305,513 European ancestry individuals, 7,786 African individuals, 148,932 Asian individuals, 13,533 Hispanic individuals, 4,414 Brazilian individuals	4q21.23	ARHGAP24	rs17010957-?	NR	2E-17				Affymetrix, Illumina [18800000] (imputed)	N
1246	chr4	86719164	86719165	rs17010957	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Systolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	4q21.23	ARHGAP24	rs17010957-T	0.857	2E-9		0.498	[0.34-0.66] mm Hg decrease	Affymetrix, Illumina, Perlegen [128272]	N
1246	chr4	86723102	86723103	rs17010961	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	4q21.23		rs17010961-A	NR	4E-14		0.0195	[0.014-0.025] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
1246	chr4	86723102	86723103	rs17010961	32141789	Theriault S	2019-10-15	Circ Genom Precis Med	Genetic Association Analyses Highlight IL6, ALPL, and NAV1 As 3 New Susceptibility Genes Underlying Calcific Aortic Valve Stenosis.	Calcific aortic valve stenosis	5,115 European ancestry cases, 354,072 European ancestry controls	NA	4q21.23	ARHGAP24	rs17010961-A	0.141	1E-6		1.2	[1.13-1.27]	Affymetrix, Illumina [8000000] (imputed)	N
1246	chr4	86723102	86723103	rs17010961	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	4q21.23		rs17010961-?	NR	2E-23				NR [~ 8900000] (imputed)	N
1246	chr4	86725958	86725959	rs72976751	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	4q21.23		rs72976751-?	NR	3E-28		0.0313374	[0.025-0.037] unit decrease	Affymetrix [20259828] (imputed)	N
1246	chr4	86725958	86725959	rs72976751	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	4q21.23	ARHGAP24	rs72976751-A	0.860876	1E-11		0.0342643	[0.025-0.044] unit decrease	NR [17166351] (imputed)	N
1246	chr4	86725958	86725959	rs72976751	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	4q21.23	ARHGAP24	rs72976751-A	0.860578	5E-11	(women)	0.0427462	[0.03-0.056] unit decrease	NR [17166351] (imputed)	N
1246	chr4	86726824	86726825	rs11729287	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	4q21.23		rs11729287-T	0.499349	2E-8		0.0113313	[0.0074-0.0153] unit increase	Illumina [13479295] (imputed)	N
1246	chr4	86730713	86730714	rs4693128	31605138	Avitabile M	2019-09-07	Carcinogenesis	Neural crest-derived tumor neuroblastoma and melanoma share 1p13.2 as susceptibility locus that shows a long-range interaction with the SLC16A1 gene.	Neuroblastoma or malignant cutaneous melanoma	2,101 European ancestry neuroblastoma cases, 12,874 European ancestry malignant cutaneous melanoma cases, 27,405 European ancestry controls	2,039 European ancestry neuroblastoma cases, 508 European ancestry malignant cutaneous melanoma cases, 3,469 European ancestry controls	4q21.23	ARHGAP24	rs4693128-T	0.17587	1E-7		1.09834	[1.06-1.13]	NR [NR] (imputed)	N
1246	chr4	86731384	86731385	rs17011002	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	4q21.23	ARHGAP24	rs17011002-G	0.8606	5E-12		0.2485	[0.18-0.32] mmHg decrease	Affymetrix [NR] (imputed)	N
1246	chr4	86737467	86737468	rs72978881	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	4q21.23		rs72978881-G	NR	8E-19		0.0234	[0.018-0.028] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
1246	chr4	86739900	86739901	rs12506184	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	4q21.23	ARHGAP24	rs12506184-T	0.8789	4E-13		0.381	[0.28-0.48] mmHg decrease	Affymetrix [NR] (imputed)	N
1246	chr4	86746255	86746256	rs79980676	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	4q21.23		rs79980676-?	NR	9E-34				NR [~ 8900000] (imputed)	N
1246	chr4	86747928	86747929	rs1563000	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	4q21.23		rs1563000-G	NR	3E-20		0.0244	[0.019-0.029] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1246	chr4	86752803	86752804	rs4693741	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	4q21.23		rs4693741-?	NR	6E-9				NR [~ 8900000] (imputed)	N
1246	chr4	86754637	86754638	rs345367	34737425	Mansour Aly D	2021-11-04	Nat Genet	Genome-wide association analyses highlight etiological differences underlying newly defined subtypes of diabetes.	Mild age-related type 2 diabetes	2,861 Scandinavian ancestry cases, 2,744 Scandinavian ancestry controls	NA	4q21.23	ARHGAP24	rs345367-G	0.297461	2E-8		0.788	[0.725 - 0.856]	Illumina [5397657] (imputed)	N
1247	chr4	86834822	86834823	rs11930286	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	4q21.23		rs11930286-T	NR	4E-8		0.0098	[0.0063-0.0133] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
1247	chr4	86863165	86863166	rs346508	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	4q21.23		rs346508-?	NR	6E-12				NR [~ 8900000] (imputed)	N
1248	chr4	86928772	86928773	rs2164536	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	4q21.3		rs2164536-?	NR	5E-10				NR [~ 8900000] (imputed)	N
1248	chr4	86931090	86931091	rs7439032	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	129,405 East Asian ancestry individuals	NA	4q21.3		rs7439032-C	0.586184	3E-9		0.0210058	[0.014-0.028] unit decrease	Illumina [13475706] (imputed)	N
1248	chr4	86931090	86931091	rs7439032	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	4q21.3	NR	rs7439032-C	NR	8E-11		0.0193	[0.013-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
1248	chr4	86931090	86931091	rs7439032	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	4q21.3	MAPK10	rs7439032-T	0.198637	5E-12		0.0172309	[0.012-0.022] unit increase	Affymetrix [NR] (imputed)	N
1248	chr4	86931090	86931091	rs7439032	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	4q21.3	MAPK10	rs7439032-?	NR	3E-8		0.0181	[0.012-0.024] unit increase	Affymetrix [5701386] (imputed)	N
1248	chr4	86979582	86979583	rs3775182	24483146	Li L	2014-02-01	BMC Genomics	Discovery of genetic biomarkers contributing to variation in drug response of cytidine analogues using human lymphoblastoid cell lines.	Response to cytidine analogues (gemcitabine)	60 European ancestry lymphoblastoid cell lines, 54 African American lymphoblastoid cell lines, 60 Han Chinese ancestry lymphoblastoid cell lines	NA	4q21.3	MAPK10	rs3775182-?		3E-6				Affymetrix, Illumina [1348798]	N
1249	chr4	87076995	87076996	rs116695872	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Roseibacillus abundance in stool	5,959 Finnish ancestry individuals	NA	4q21.3		rs116695872-G	0.0528289	3E-8		0.0633949	[0.041-0.086] unit increase	Illumina [7980478] (imputed)	N
1249	chr4	87132770	87132771	rs2904090	25353672	Fernandez-Navarro P	2014-10-29	Int J Cancer	Genome wide association study identifies a novel putative mammographic density locus at 1q12-q21.	Mammographic density	239 European ancestry low mammographic density females, 239 European ancestry high mammographic density females	NA	4q21.3	NR	rs2904090-C	0.185	8E-6		2.22	[1.54-3.13]	Illumina [575374]	N
1250	chr4	87185270	87185271	rs72663907	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	4q21.3	NR	rs72663907-T	0.877942	2E-13		0.00934535	[0.0068-0.0119] unit increase	Affymetrix [16582909] (imputed)	N
1250	chr4	87185270	87185271	rs72663907	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	4q21.3	NR	rs72663907-T	0.877549	1E-11		0.0119604	[0.0084-0.0155] unit increase	Affymetrix [16582621] (imputed)	N
1250	chr4	87185270	87185271	rs72663907	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	4q21.3	NR	rs72663907-T	0.877942	6E-12		0.00987821	[0.007-0.0128] unit increase	Affymetrix [16582965] (imputed)	N
1250	chr4	87185270	87185271	rs72663907	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	4q21.3	NR	rs72663907-T	0.877549	6E-11		0.0121314	[0.0083-0.0159] unit increase	Affymetrix [16582614] (imputed)	N
1250	chr4	87222695	87222696	rs17408832	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	4q21.3	NR	rs17408832-C	0.62247	8E-10		0.0189949	[0.013-0.025] unit increase	Affymetrix [16577313] (imputed)	N
1250	chr4	87223185	87223186	rs11284646	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	4q21.3	NR	rs11284646-C	0.2932	4E-6	(EA)	0.032	[0.018-0.046] unit decrease	Illumina [~ 11800000] (imputed)	N
1250	chr4	87232983	87232984	rs11726269	25009551	Kullo IJ	2014-06-25	Front Genet	The ATXN2-SH2B3 locus is associated with peripheral arterial disease: an electronic medical record-based genome-wide association study.	Peripheral artery disease	1,641 European ancestry cases, 1,604 European ancestry controls	740 European ancestry cases, 1,501 European ancestry controls	4q21.3	MAPK10	rs11726269-G	NR	2E-6		1.39	[1.22-1.59]	Illumina [537872]	N
1250	chr4	87252258	87252259	rs4693142	31372216	Haaland OA	2019-06-24	F1000Res	A genome-wide scan of cleft lip triads identifies parent-of-origin interaction effects between ANK3 and maternal smoking, and between ARHGEF10 and alcohol consumption.	Cleft lip with or without cleft palate x maternal periconceptional smoking interaction (parent of origin effect)	825 European ancestry case-parent duos or trios, 1,024 Asian ancestry case-parent duos or trios, 59 case-parent duos or trios	NA	4q21.3	MAPK10	rs4693142-?	NR	6E-6	(EA)	0.26	[0.15-0.47]	NR [341191]	N
1250	chr4	87269711	87269712	rs62307409	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	4q21.3	MAPK10	rs62307409-A	0.753921	2E-14		0.00339355	[0.0025-0.0043] unit increase	Affymetrix [13995440] (imputed)	N
1250	chr4	87277072	87277073	rs72663963	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	4q21.3	NR	rs72663963-?	NR	7E-6		4.482	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1251	chr4	87344016	87344017	rs12508545	28077804	Ben-Avraham D	2017-01-10	Aging (Albany NY)	The complex genetics of gait speed: genome-wide meta-analysis approach.	Gait speed in old age	31,478 European ancestry older adults	2,588 European ancestry older adults	4q21.3	MAPK10	rs12508545-?	NR	2E-6		0.0333	[0.02-0.047] m/sec increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1251	chr4	87383275	87383276	rs7675845	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure in major depressive disorder-negative individuals	10,701 European ancestry cases, 39,677 European ancestry controls	NA	4q21.3	NR	rs7675845-A	0.617914	4E-6		1.1312217	[1.08-1.19]	Affymetrix [7791636] (imputed)	N
1251	chr4	87413423	87413424	rs2869441	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	4q21.3	NR	rs2869441-G	NR	6E-13		0.0261	[0.019-0.033] unit decrease	Affymetrix [9000000] (imputed)	N
1252	chr4	87472314	87472315	rs182928083	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total concentration of branched-chain amino acids (leucine + isoleucine + valine)	115,051 European ancestry individuals	NA	4q21.3		rs182928083-G	0.994867	2E-10		0.184725	[0.13-0.24] unit decrease	NR [11722792] (imputed)	N
1252	chr4	87472314	87472315	rs182928083	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Leucine levels	115,078 European ancestry individuals	NA	4q21.3		rs182928083-G	0.994863	2E-10		0.182673	[0.13-0.24] unit decrease	NR [11722792] (imputed)	N
1252	chr4	87473775	87473776	rs4478147	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine - clinic-based	5,175 European ancestry clinic-based cases, 13,972 European ancestry clinic-based controls	NA	4q21.3	intergenic	rs4478147-G	0.47	2E-6		1.12	[1.07-1.18]	Affymetrix, Illumina [~ 2300000] (imputed)	N
1252	chr4	87513578	87513579	rs72665771	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	4q21.3	MAPK10	rs72665771-A	NR	8E-6		1.0556318	NR	Affymetrix, Illumina [8278136] (imputed)	N
1252	chr4	87529077	87529078	rs61277444	27647854	Sandholm N	2016-09-19	J Am Soc Nephrol	The Genetic Landscape of Renal Complications in Type 1 Diabetes.	Kidney disease (end stage renal disease vs normoalbuminuria) in type 1 diabetes	729 European ancestry cases, 84 cases, 1,903 European ancestry controls, 491 controls	94 European ancestry cases, 964 cases, 627 European ancestry controls, 3187 controls	4q21.3	PTPN13	rs61277444-G	0.08	6E-6		1.42	[1.20-1.67]	Illumina [NR] (imputed)	N
1252	chr4	87529077	87529078	rs61277444	27647854	Sandholm N	2016-09-19	J Am Soc Nephrol	The Genetic Landscape of Renal Complications in Type 1 Diabetes.	Kidney disease (end stage renal disease vs non-end stage renal disease) in type 1 diabetes	729 European ancestry cases, 84 cases, 3,290 European ancestry controls, 705 controls	94 European ancestry cases, 964 cases, 993 European ancestry controls, 4806 controls	4q21.3	PTPN13	rs61277444-G	0.08	2E-6		1.41	[1.21-1.65]	Illumina [NR] (imputed)	N
1252	chr4	87554187	87554188	rs55798827	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	4q21.3	NR	rs55798827-?	NR	7E-6		4.492	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1253	chr4	87659121	87659122	rs140557441	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	4q21.3		rs140557441-?	NR	1E-40				NR [~ 8900000] (imputed)	N
1253	chr4	87683714	87683715	rs181519890	24159190	Seppala I	2013-10-24	Eur Heart J	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Symmetrical dimethylarginine levels	5110 European ancestry individuals	NA	4q21.3	NR	rs181519890-C	0.003	6E-6		1.063	[0.60-1.52] unit increase	Affymetrix, Illumina [10085758] (imputed)	N
1254	chr4	87690997	87690998	rs2230600	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	4q21.3	PTPN13	rs2230600-G		1E-8		0.016	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
1254	chr4	87702427	87702428	rs10013467	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Word spelling	3,399 European ancestry individuals	NA	4q21.3	PTPN13	rs10013467-G	0.873578571	6E-6		0.179264	[0.1-0.26] unit increase	Illumina [6969139] (imputed)	N
1254	chr4	87717133	87717134	rs10009119	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs10009119-C	0.885313	2E-17		0.121275	[0.093-0.15] decrease	Affymetrix [11014269] (imputed)	N
1254	chr4	87718367	87718368	rs113925979	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (CGI-S score)	1,390 European ancestry cases	NA	4q21.3		rs113925979-G	NR	8E-6	(GLM)	0.8082	[NR] unit increase	Illumina [~ 9000000] (imputed)	N
1254	chr4	87718401	87718402	rs113655471	33742053	Wells HRR	2021-03-19	Sci Rep	Genome-wide association study suggests that variation at the RCOR1 locus is associated with tinnitus in UK Biobank.	Tinnitus	91,424 British ancestry individuals	NA	4q21.3	PTPN13	rs113655471-T	0.99	2E-7		0.188	[0.12-0.26] unit decrease	Affymetrix [9740198] (imputed)	N
1254	chr4	87730979	87730980	rs61730641	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	4q21.3		rs61730641-T	NR	5E-26		0.0679	[0.055-0.08] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1254	chr4	87754418	87754419	rs10050311	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	4q21.3	NR	rs10050311-T	NR	8E-15		0.0262	[0.02-0.033] unit increase	Affymetrix [9000000] (imputed)	N
1254	chr4	87754418	87754419	rs10050311	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	4q21.3	NR	rs10050311-T	NR	1E-23		0.0355	[0.029-0.042] unit decrease	Affymetrix [9000000] (imputed)	N
1254	chr4	87754418	87754419	rs10050311	22791750	Chen G	2012-07-12	Hum Mol Genet	Genome-wide association study identifies novel loci association with fasting insulin and insulin resistance in African Americans.	Insulin-related traits	927 African American non-diabetic individuals	570 West African ancestry non-diabetic individuals	4q21.3	SLC10A6	rs10050311-T	0.09	8E-6	(FI)	0.25	[0.13-0.37] unit decrease	Affymetrix [5396838] (imputed)	N
1254	chr4	87759087	87759088	rs34881728	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	4q21.3		rs34881728-?	NR	1E-11				NR [~ 8900000] (imputed)	N
1254	chr4	87769928	87769929	rs13106574	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	4q21.3		rs13106574-T	0.8067	2E-10		0.11370804	[0.079-0.148] mmHg increase	Affymetrix, Illumina [242866] (imputed)	N
1254	chr4	87790804	87790805	rs13103212	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	4q21.3	NR	rs13103212-T	0.08	4E-8		0.0181	[0.011-0.025] unit decrease	NR [NR]	N
1254	chr4	87800576	87800577	rs2121871	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs2121871-C	0.540073	2E-11		0.0608366	[0.043-0.079] decrease	Affymetrix [11014269] (imputed)	N
1254	chr4	87806047	87806048	rs13151797	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	4q21.3		rs13151797-A	NR	1E-8		0.0235	[0.015-0.032] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
1254	chr4	87809024	87809025	rs28664715	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	4q21.3	NR	rs28664715-C	NR	2E-9		0.0255	[0.017-0.034] unit increase	Affymetrix [9000000] (imputed)	N
1254	chr4	87809024	87809025	rs28664715	24777453	Auer PL	2014-04-28	Nat Genet	Rare and low-frequency coding variants in CXCR2 and other genes are associated with hematological traits.	Hemoglobin levels	24,814 European ancestry individuals	6,526 European ancestry individuals	4q21.3	C4orf36	rs28664715-T	0.91	4E-6		0.068	[0.039-0.097] unit decrease	Illumina [183585]	N
1254	chr4	87814052	87814053	rs10015477	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	4q21.3		rs10015477-G	0.631703	5E-8		0.0210486	[0.013-0.029] unit increase	NR [11722792] (imputed)	N
1255	chr4	87819368	87819369	rs28450181	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	4q21.3		rs28450181-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1255	chr4	87824771	87824772	rs28641910	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	4q21.3	NR	rs28641910-G	0.371	4E-13				NR [9056863] (imputed)	N
1255	chr4	87825432	87825433	rs13115795	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	4q21.3		rs13115795-C	0.642662	8E-14		0.0313429	[0.023-0.04] unit decrease	NR [11722792] (imputed)	N
1255	chr4	87825432	87825433	rs13115795	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	4q21.3		rs13115795-C	0.642497	7E-9		0.0252019	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
1255	chr4	87825432	87825433	rs13115795	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	4q21.3		rs13115795-C	0.642662	4E-11		0.0285759	[0.02-0.037] unit decrease	NR [11722792] (imputed)	N
1255	chr4	87825432	87825433	rs13115795	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for VLDL particles	115,082 European ancestry individuals	NA	4q21.3		rs13115795-C	0.642662	1E-8		0.023239	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
1255	chr4	87825784	87825785	rs35667731	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	4q21.3	C4orf36, AFF1-AS1	rs35667731-A	0.9154	5E-11		0.17	[0.12-0.22] unit decrease	Affymetrix [~ 11900000] (imputed)	N
1255	chr4	87829250	87829251	rs1075989	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	4q21.3	C4orf36, AFF1-AS1	rs1075989-A	0.9101	7E-11		0.162	[0.11-0.21] unit decrease	Affymetrix [~ 11900000] (imputed)	N
1255	chr4	87832600	87832601	rs3113494	22470424	Kwee LC	2012-03-28	PLoS One	A high-density genome-wide association screen of sporadic ALS in US veterans.	Amyotrophic lateral sclerosis	Up to 639 European ancestry cases, 6,257 European ancestry controls	Up to 183 European ancestry cases, 961 European ancestry controls	4q21.3	LOC100506746	rs3113494-?	NR	9E-7	(outcome)	1.43	[1.25-1.67]	Affymetrix, Illumina [1280579]	N
1255	chr4	87836651	87836652	rs2705619	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	4q21.3	C4orf36	rs2705619-A	0.705693	6E-9		0.014451937	[0.0096-0.0193] unit decrease	Affymetrix [93095623] (imputed)	N
1255	chr4	87836651	87836652	rs2705619	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	4q21.3	C4orf36	rs2705619-G	0.294002	3E-10		0.0143883	[0.0099-0.0189] unit decrease	Affymetrix [NR] (imputed)	N
1255	chr4	87848738	87848739	rs1868245	26926045	Adhikari K	2016-03-01	Nat Commun	A genome-wide association scan in admixed Latin Americans identifies loci influencing facial and scalp hair features.	Eyebrow thickness	2,922 Latin American individuals	NA	4q21.3	AFF1, C4orf36, KLHL8, LOC100506746, PTPN13, SLC10A6	rs1868245-?	NR	2E-6				Illumina [9143600] (imputed)	N
1255	chr4	87853208	87853211	rs200247723	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	4q21.3	C4orf36	rs200247723-A	0.744358	2E-10		0.016084695	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1255	chr4	87860511	87860512	rs79243012	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atopic dermatitis	6,224 European ancestry cases, 475,075 European ancestry controls, 4,296 East Asian ancestry cases, 163,807 East Asian ancestry controls	NA	4q21.3		rs79243012-C	NR	2E-8		0.1912	[0.12-0.26] unit increase	Affymetrix, Illumina [25843389] (imputed)	N
1255	chr4	87860513	87860514	rs80199341	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atopic dermatitis	4,296 East Asian ancestry cases, 163,807 East Asian ancestry controls	NA	4q21.3		rs80199341-G	0.141935482	1E-8		0.21253885	[0.14-0.29] unit increase	Illumina [13428180] (imputed)	N
1255	chr4	87860513	87860514	rs80199341	34116867	Tanaka N	2021-06-02	J Allergy Clin Immunol	Eight novel susceptibility loci and putative causal variants in atopic dermatitis.	Atopic dermatitis	2,597 Japanese ancestry cases, 110,504 Japanese ancestry controls	NA	4q21.3		rs80199341-?	NR	5E-8		1.24	[1.15-1.34]	Illumina [9900441] (imputed)	N
1255	chr4	87862395	87862396	rs2705616	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	4q21.3	AFF1	rs2705616-C	0.468907	2E-8		0.0112493	[0.0073-0.0152] unit decrease	Affymetrix [NR] (imputed)	N
1255	chr4	87862395	87862396	rs2705616	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	4q21.3	AFF1	rs2705616-C	0.469012	1E-11		0.0129676	[0.0092-0.0167] unit increase	Affymetrix [NR] (imputed)	N
1255	chr4	87862395	87862396	rs2705616	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	4q21.3	AFF1	rs2705616-C	NR	1E-11		1.077238	NR	Affymetrix, Illumina [8278136] (imputed)	N
1255	chr4	87875008	87875008	rs760492889	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	4q21.3	NR	rs760492889-D	0.199635	3E-13		0.018699	[0.014-0.024] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1255	chr4	87876415	87876416	rs72667737	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q21.3	NR	rs72667737-T	0.193489	7E-41				Affymetrix, Illumina [19905671] (imputed)	N
1255	chr4	87882814	87882815	rs34745873	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	4q21.3	AFF1	rs34745873-C	0.187121	1E-12		0.020454526	[0.015-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1255	chr4	87885280	87885280	rs571643813	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	4q21.3	AFF1	rs571643813-GT	0.169589	5E-24		0.031233495	[0.025-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
1255	chr4	87889436	87889437	rs17012216	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular volume	108,256 Japanese ancestry individuals	NA	4q21.3	AFF1	rs17012216-?	NR	1E-9		0.02717	[0.018-0.036] unit decrease novel	Illumina [6108953] (imputed)	N
1255	chr4	87898929	87898930	rs55913164	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	4q21.3		rs55913164-C	0.358401	5E-12		0.0258664	[0.019-0.033] unit decrease	Illumina [13476266] (imputed)	N
1255	chr4	87898929	87898930	rs55913164	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	121,047 East Asian ancestry individuals	NA	4q21.3	NR	rs55913164-T	0.642337	8E-13		0.030546	[0.022-0.039] SD units increase	Affymetrix, Illumina [16286195] (imputed)	N
1255	chr4	87899284	87899285	rs17752307	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	4q21.3		rs17752307-G	NR	2E-44		0.0329	[0.028-0.037] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
1255	chr4	87899308	87899312	rs66611183	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	4q21.3	AFF1	rs66611183-T	0.785615	6E-37		0.03505217	[0.03-0.04] unit increase	Affymetrix [93095623] (imputed)	N
1255	chr4	87902157	87902157	rs5860048	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	4q21.3		rs5860048-?	NR	2E-22		0.0199992	[0.016-0.024] unit increase	Affymetrix [20259828] (imputed)	N
1255	chr4	87902157	87902157	rs5860048	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	4q21.3	AFF1	rs5860048-T	0.41611	1E-9		0.0196048	[0.013-0.026] unit increase	NR [17166351] (imputed)	N
1255	chr4	87902157	87902157	rs5860048	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	4q21.3	AFF1	rs5860048-T	0.415892	9E-7	(men)	0.0249099	[0.015-0.035] unit increase	NR [17166351] (imputed)	N
1255	chr4	87904688	87904692	rs144261754	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	4q21.3	NR	rs144261754-T	0.29	3E-10		0.899	[0.87-0.93]	Illumina [11270530] (imputed)	N
1255	chr4	87904688	87904692	rs144261754	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	4q21.3	AFF1	rs144261754-T	0.191544	7E-30		0.032255795	[0.027-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
1255	chr4	87904688	87904692	rs144261754	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	4q21.3	AFF1	rs144261754-T	0.191524	3E-29		0.031914804	[0.026-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
1255	chr4	87905695	87905696	rs34077745	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	4q21.3	AFF1	rs34077745-T		1E-11		0.027	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
1255	chr4	87911690	87911691	rs17012234	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q21.3	NR	rs17012234-T	0.222339	3E-76				Affymetrix, Illumina [24246363] (imputed)	N
1255	chr4	87913609	87913610	rs143152228	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Valine levels	115,052 European ancestry individuals	NA	4q21.3		rs143152228-C	0.994748	6E-10		0.180436	[0.12-0.24] unit decrease	NR [11722792] (imputed)	N
1255	chr4	87916085	87916086	rs56023922	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	82,810 East Asian ancestry individuals	NA	4q21.3		rs56023922-C	0.330304	6E-9		0.0291373	[0.019-0.039] unit increase	Illumina [13467171] (imputed)	N
1255	chr4	87929191	87929192	rs340637	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of white cells	171,996 European ancestry individuals	NA	4q21.3	AFF1	rs340637-T	0.7724	1E-24		0.04230716	[0.034-0.05] unit increase	Affymetrix [~ 2500000] (imputed)	N
1255	chr4	87931403	87931404	rs340635	23535033	Sherva R	2013-03-24	Alzheimers Dement	Genome-wide association study of the rate of cognitive decline in Alzheimer's disease.	Alzheimer's disease (cognitive decline)	303 European ancestry cases		4q21.3	AFF1	rs340635-?	0.03	2E-7		0.23	unit decrease	Illumina [NR] (imputed)	N
1255	chr4	87940204	87940205	rs56406125	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	4q21.3	NR	rs56406125-T	0.190072	6E-41		0.034946	[0.03-0.04] SD unit decrease	Affymetrix, Illumina [50036608] (imputed)	N
1255	chr4	87943086	87943087	rs56390363	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count (basophil)	171,846 European ancestry individuals	NA	4q21.3	AFF1	rs56390363-A	0.1908	1E-24		0.04561271	[0.037-0.054] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1256	chr4	87952198	87952199	rs72667759	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	349,856 European ancestry individuals, 91,908 East Asian ancestry individuals	NA	4q21.3		rs72667759-G	NR	2E-11		0.015	[0.011-0.019] unit decrease	Affymetrix, Illumina [20529536] (imputed)	N
1256	chr4	87956673	87956674	rs62306508	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	4q21.3		rs62306508-C	0.801	1E-8				Affymetrix [10369434] (imputed)	N
1256	chr4	87956716	87956716	rs11434868	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	4q21.3		rs11434868-?	NR	3E-26		0.0220249	[0.018-0.026] unit increase	Affymetrix [20259828] (imputed)	N
1256	chr4	87958394	87958395	rs340630	22291604	Okada Y	2012-01-26	PLoS Genet	A genome-wide association study identified AFF1 as a susceptibility locus for systemic lupus eyrthematosus in Japanese.	Systemic lupus erythematosus	891 Japanese ancestry cases, 3,384 Japanese ancestry controls	1,387 Japanese ancestry cases, 28,564 Japanese ancestry controls	4q21.3	AFF1	rs340630-A	0.52	8E-9		1.21	[1.14-1.30]	Illumina [430797]	N
1256	chr4	87959804	87959805	rs55816619	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	4q21.3		rs55816619-A	0.338832	1E-11		0.0265579	[0.019-0.034] unit decrease	Illumina [13476299] (imputed)	N
1256	chr4	87959804	87959805	rs55816619	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	119,629 East Asian ancestry individuals	NA	4q21.3	NR	rs55816619-G	0.651587	1E-11		0.029835	[0.021-0.038] SD units increase	Affymetrix, Illumina [16286228] (imputed)	N
1256	chr4	87968797	87968798	rs6854749	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Saturated fatty acid levels	115,006 European ancestry individuals	NA	4q21.3		rs6854749-A	0.80201	3E-10		0.0320809	[0.022-0.042] unit decrease	NR [11722792] (imputed)	N
1256	chr4	87968797	87968798	rs6854749	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	4q21.3		rs6854749-T	NR	3E-42		0.0315	[0.027-0.036] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
1256	chr4	87968797	87968798	rs6854749	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	4q21.3	NR	rs6854749-T	0.199178	2E-69		0.039841	[0.035-0.044] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1256	chr4	87968797	87968798	rs6854749	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q21.3	NR	rs6854749-T	0.232855	9E-70				Affymetrix, Illumina [20825802] (imputed)	N
1256	chr4	87968797	87968798	rs6854749	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	4q21.3	NR	rs6854749-T	0.199832	4E-61		0.039482	[0.035-0.044] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
1256	chr4	87968797	87968798	rs6854749	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	4q21.3	NR	rs6854749-T	0.20069599999999999	4E-9		0.0144127	[0.0096-0.0193] unit increase	Affymetrix [16583148] (imputed)	N
1256	chr4	87970126	87970127	rs17604480	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	4q21.3	AFF1	rs17604480-A	0.199049	3E-31		0.032444485	[0.027-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
1256	chr4	87970126	87970127	rs17604480	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	4q21.3	AFF1	rs17604480-A	0.199046	1E-42		0.0418081	[0.037-0.047] unit decrease	Affymetrix [93095623] (imputed)	N
1256	chr4	87973667	87973668	rs6840258	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	4q21.3	AFF1	rs6840258-T	0.1982	2E-15		0.03517071	[0.026-0.044] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1256	chr4	87973667	87973668	rs6840258	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of granulocytes	170,223 European ancestry individuals	NA	4q21.3	AFF1	rs6840258-T	0.1982	6E-26		0.04634863	[0.038-0.055] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1256	chr4	87976054	87976055	rs443459	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	4q21.3	AFF1	rs443459-A	0.2616	9E-15		0.03119863	[0.023-0.039] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1256	chr4	87976177	87976178	rs6819155	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin	108,054 Japanese ancestry individuals	NA	4q21.3	AFF1	rs6819155-?	NR	8E-9		0.02516	[0.017-0.034] unit decrease novel	Illumina [6108953] (imputed)	N
1256	chr4	87976358	87976359	rs1471251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	VLDL cholesterol levels	115,082 European ancestry individuals	NA	4q21.3		rs1471251-A	0.602879	7E-13		0.0303567	[0.022-0.039] unit decrease	NR [11722792] (imputed)	N
1256	chr4	87976358	87976359	rs1471251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	4q21.3		rs1471251-A	0.602871	1E-11		0.0269515	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
1256	chr4	87976358	87976359	rs1471251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	4q21.3		rs1471251-A	0.602879	2E-17		0.0340366	[0.026-0.042] unit decrease	NR [11722792] (imputed)	N
1256	chr4	87976358	87976359	rs1471251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	4q21.3		rs1471251-A	0.602879	9E-19		0.0358428	[0.028-0.044] unit decrease	NR [11722792] (imputed)	N
1256	chr4	87976358	87976359	rs1471251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	4q21.3		rs1471251-A	0.602879	1E-14		0.0307127	[0.023-0.039] unit decrease	NR [11722792] (imputed)	N
1256	chr4	87976358	87976359	rs1471251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very small VLDL	115,082 European ancestry individuals	NA	4q21.3		rs1471251-A	0.602879	1E-18		0.0363443	[0.028-0.044] unit decrease	NR [11722792] (imputed)	N
1256	chr4	87976358	87976359	rs1471251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large VLDL	115,082 European ancestry individuals	NA	4q21.3		rs1471251-A	0.602879	1E-13		0.0301103	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
1256	chr4	87976358	87976359	rs1471251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large HDL	115,082 European ancestry individuals	NA	4q21.3		rs1471251-A	0.602879	5E-10		0.0256771	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
1256	chr4	87976358	87976359	rs1471251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small VLDL	115,082 European ancestry individuals	NA	4q21.3		rs1471251-A	0.602879	8E-15		0.0317217	[0.024-0.04] unit decrease	NR [11722792] (imputed)	N
1256	chr4	87976358	87976359	rs1471251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small LDL	115,082 European ancestry individuals	NA	4q21.3		rs1471251-A	0.602879	5E-14		0.0309369	[0.023-0.039] unit decrease	NR [11722792] (imputed)	N
1256	chr4	87976358	87976359	rs1471251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small HDL	115,082 European ancestry individuals	NA	4q21.3		rs1471251-A	0.602879	2E-16		0.033562	[0.026-0.042] unit decrease	NR [11722792] (imputed)	N
1256	chr4	87976358	87976359	rs1471251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium VLDL	115,082 European ancestry individuals	NA	4q21.3		rs1471251-A	0.602879	1E-11		0.0278389	[0.02-0.036] unit decrease	NR [11722792] (imputed)	N
1256	chr4	87976358	87976359	rs1471251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium LDL	115,082 European ancestry individuals	NA	4q21.3		rs1471251-A	0.602879	9E-12		0.0282036	[0.02-0.036] unit decrease	NR [11722792] (imputed)	N
1256	chr4	87976358	87976359	rs1471251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large VLDL	115,082 European ancestry individuals	NA	4q21.3		rs1471251-A	0.602879	1E-10		0.0263599	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
1256	chr4	87976358	87976359	rs1471251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large LDL	115,082 European ancestry individuals	NA	4q21.3		rs1471251-A	0.602879	3E-12		0.0290039	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
1256	chr4	87976358	87976359	rs1471251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in VLDL	115,082 European ancestry individuals	NA	4q21.3		rs1471251-A	0.602879	8E-14		0.0303667	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
1256	chr4	87976358	87976359	rs1471251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in LDL	115,082 European ancestry individuals	NA	4q21.3		rs1471251-A	0.602879	1E-12		0.029503	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
1256	chr4	87976358	87976359	rs1471251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in IDL	115,082 European ancestry individuals	NA	4q21.3		rs1471251-A	0.602879	2E-16		0.0340067	[0.026-0.042] unit decrease	NR [11722792] (imputed)	N
1256	chr4	87976358	87976359	rs1471251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total triglycerides levels	115,082 European ancestry individuals	NA	4q21.3		rs1471251-A	0.602879	1E-14		0.0316321	[0.024-0.04] unit decrease	NR [11722792] (imputed)	N
1256	chr4	87976358	87976359	rs1471251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very small VLDL	115,082 European ancestry individuals	NA	4q21.3		rs1471251-A	0.602879	1E-13		0.0308089	[0.023-0.039] unit decrease	NR [11722792] (imputed)	N
1256	chr4	87976358	87976359	rs1471251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large VLDL	115,082 European ancestry individuals	NA	4q21.3		rs1471251-A	0.602879	9E-15		0.0315794	[0.024-0.04] unit decrease	NR [11722792] (imputed)	N
1256	chr4	87976358	87976359	rs1471251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small VLDL	115,082 European ancestry individuals	NA	4q21.3		rs1471251-A	0.602879	2E-14		0.0320677	[0.024-0.04] unit decrease	NR [11722792] (imputed)	N
1256	chr4	87976358	87976359	rs1471251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium VLDL	115,082 European ancestry individuals	NA	4q21.3		rs1471251-A	0.602879	1E-10		0.0271541	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
1256	chr4	87976358	87976359	rs1471251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large VLDL	115,082 European ancestry individuals	NA	4q21.3		rs1471251-A	0.602879	4E-13		0.0296749	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
1256	chr4	87976358	87976359	rs1471251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	4q21.3		rs1471251-A	0.602879	3E-15		0.0322078	[0.024-0.04] unit decrease	NR [11722792] (imputed)	N
1256	chr4	87976358	87976359	rs1471251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in VLDL	115,082 European ancestry individuals	NA	4q21.3		rs1471251-A	0.602879	4E-15		0.0325611	[0.024-0.041] unit decrease	NR [11722792] (imputed)	N
1256	chr4	87976358	87976359	rs1471251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total fatty acid levels	115,006 European ancestry individuals	NA	4q21.3		rs1471251-A	0.602878	3E-10		0.0263886	[0.018-0.035] unit decrease	NR [11722792] (imputed)	N
1256	chr4	87976358	87976359	rs1471251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	4q21.3		rs1471251-A	0.602878	1E-13		0.0290741	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
1256	chr4	87976358	87976359	rs1471251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to monounsaturated fatty acids	115,006 European ancestry individuals	NA	4q21.3		rs1471251-A	0.602878	9E-12		0.0276545	[0.02-0.036] unit increase	NR [11722792] (imputed)	N
1256	chr4	87976358	87976359	rs1471251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	4q21.3		rs1471251-A	0.602878	8E-11		0.0264073	[0.018-0.034] unit increase	NR [11722792] (imputed)	N
1256	chr4	87976358	87976359	rs1471251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	4q21.3		rs1471251-A	0.602879	4E-8		0.0231574	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
1256	chr4	87976358	87976359	rs1471251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	4q21.3		rs1471251-A	0.602867	3E-17		0.0346559	[0.027-0.043] unit decrease	NR [11722792] (imputed)	N
1256	chr4	87976358	87976359	rs1471251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very small VLDL	115,082 European ancestry individuals	NA	4q21.3		rs1471251-A	0.602879	6E-15		0.032456	[0.024-0.041] unit decrease	NR [11722792] (imputed)	N
1256	chr4	87976358	87976359	rs1471251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large VLDL	115,082 European ancestry individuals	NA	4q21.3		rs1471251-A	0.602879	1E-15		0.0327978	[0.025-0.041] unit decrease	NR [11722792] (imputed)	N
1256	chr4	87976358	87976359	rs1471251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small VLDL	115,082 European ancestry individuals	NA	4q21.3		rs1471251-A	0.602879	7E-11		0.0275266	[0.019-0.036] unit decrease	NR [11722792] (imputed)	N
1256	chr4	87976358	87976359	rs1471251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium VLDL	115,082 European ancestry individuals	NA	4q21.3		rs1471251-A	0.602879	1E-9		0.0257787	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
1256	chr4	87976358	87976359	rs1471251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large VLDL	115,082 European ancestry individuals	NA	4q21.3		rs1471251-A	0.602879	4E-15		0.0321127	[0.024-0.04] unit decrease	NR [11722792] (imputed)	N
1256	chr4	87976358	87976359	rs1471251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	4q21.3		rs1471251-A	0.602879	5E-16		0.0329337	[0.025-0.041] unit decrease	NR [11722792] (imputed)	N
1256	chr4	87976358	87976359	rs1471251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in VLDL	115,082 European ancestry individuals	NA	4q21.3		rs1471251-A	0.602879	2E-15		0.0331586	[0.025-0.041] unit decrease	NR [11722792] (imputed)	N
1256	chr4	87976358	87976359	rs1471251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Monounsaturated fatty acid levels	115,006 European ancestry individuals	NA	4q21.3		rs1471251-A	0.602878	6E-13		0.0300907	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
1256	chr4	87976358	87976359	rs1471251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	4q21.3		rs1471251-A	0.602879	2E-16		0.0333384	[0.025-0.041] unit increase	NR [11722792] (imputed)	N
1256	chr4	87976358	87976359	rs1471251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	4q21.3		rs1471251-A	0.602879	2E-11		0.0277562	[0.02-0.036] unit decrease	NR [11722792] (imputed)	N
1256	chr4	87976358	87976359	rs1471251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	4q21.3		rs1471251-A	0.602879	7E-16		0.0330816	[0.025-0.041] unit decrease	NR [11722792] (imputed)	N
1256	chr4	87976358	87976359	rs1471251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	4q21.3		rs1471251-A	0.602879	5E-8		0.0231128	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
1256	chr4	87976358	87976359	rs1471251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	4q21.3		rs1471251-A	0.602879	2E-14		0.031328	[0.023-0.039] unit decrease	NR [11722792] (imputed)	N
1256	chr4	87976358	87976359	rs1471251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	4q21.3		rs1471251-A	0.602879	1E-16		0.0337612	[0.026-0.042] unit decrease	NR [11722792] (imputed)	N
1256	chr4	87976358	87976359	rs1471251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in VLDL	115,082 European ancestry individuals	NA	4q21.3		rs1471251-A	0.602879	4E-14		0.0317382	[0.024-0.04] unit decrease	NR [11722792] (imputed)	N
1256	chr4	87976358	87976359	rs1471251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very small VLDL particles	115,082 European ancestry individuals	NA	4q21.3		rs1471251-A	0.602879	3E-12		0.0290011	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
1256	chr4	87976358	87976359	rs1471251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large VLDL particles	115,082 European ancestry individuals	NA	4q21.3		rs1471251-A	0.602879	6E-15		0.0317635	[0.024-0.04] unit decrease	NR [11722792] (imputed)	N
1256	chr4	87976358	87976359	rs1471251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small VLDL particles	115,082 European ancestry individuals	NA	4q21.3		rs1471251-A	0.602879	7E-15		0.0324333	[0.024-0.041] unit decrease	NR [11722792] (imputed)	N
1256	chr4	87976358	87976359	rs1471251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium VLDL particles	115,082 European ancestry individuals	NA	4q21.3		rs1471251-A	0.602879	2E-9		0.0255434	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
1256	chr4	87976358	87976359	rs1471251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large VLDL particles	115,082 European ancestry individuals	NA	4q21.3		rs1471251-A	0.602879	7E-14		0.0306008	[0.023-0.039] unit decrease	NR [11722792] (imputed)	N
1256	chr4	87976358	87976359	rs1471251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of chylomicrons and extremely large VLDL particles	115,082 European ancestry individuals	NA	4q21.3		rs1471251-A	0.602879	1E-15		0.0326648	[0.025-0.041] unit decrease	NR [11722792] (imputed)	N
1256	chr4	87976358	87976359	rs1471251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of VLDL particles	115,082 European ancestry individuals	NA	4q21.3		rs1471251-A	0.602879	3E-14		0.0319001	[0.024-0.04] unit decrease	NR [11722792] (imputed)	N
1256	chr4	87976358	87976359	rs1471251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	4q21.3		rs1471251-A	0.602879	1E-20		0.0381297	[0.03-0.046] unit increase	NR [11722792] (imputed)	N
1256	chr4	87976358	87976359	rs1471251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large VLDL	115,082 European ancestry individuals	NA	4q21.3		rs1471251-A	0.602879	6E-14		0.0313379	[0.023-0.04] unit decrease	NR [11722792] (imputed)	N
1256	chr4	87976358	87976359	rs1471251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small VLDL	115,082 European ancestry individuals	NA	4q21.3		rs1471251-A	0.602879	1E-12		0.0301391	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
1256	chr4	87976358	87976359	rs1471251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large VLDL	115,082 European ancestry individuals	NA	4q21.3		rs1471251-A	0.602879	1E-14		0.0322412	[0.024-0.04] unit decrease	NR [11722792] (imputed)	N
1256	chr4	87976358	87976359	rs1471251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	4q21.3		rs1471251-A	0.602879	5E-16		0.0332012	[0.025-0.041] unit decrease	NR [11722792] (imputed)	N
1256	chr4	87976358	87976359	rs1471251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in VLDL	115,082 European ancestry individuals	NA	4q21.3		rs1471251-A	0.602879	2E-11		0.0284277	[0.02-0.037] unit decrease	NR [11722792] (imputed)	N
1256	chr4	87976358	87976359	rs1471251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	4q21.3		rs1471251-A	0.602879	3E-15		0.0326306	[0.025-0.041] unit decrease	NR [11722792] (imputed)	N
1256	chr4	87976358	87976359	rs1471251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	4q21.3		rs1471251-A	0.602879	7E-11		0.027574	[0.019-0.036] unit decrease	NR [11722792] (imputed)	N
1256	chr4	87976358	87976359	rs1471251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	4q21.3		rs1471251-A	0.602879	7E-15		0.0321893	[0.024-0.04] unit decrease	NR [11722792] (imputed)	N
1256	chr4	87976358	87976359	rs1471251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	4q21.3		rs1471251-A	0.602879	1E-16		0.0338026	[0.026-0.042] unit decrease	NR [11722792] (imputed)	N
1256	chr4	87976358	87976359	rs1471251	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	4q21.3	AFF1	rs1471251-A	0.599804	8E-40		0.0250027	[0.021-0.029] unit decrease	NR [13737936] (imputed)	N
1256	chr4	87976358	87976359	rs1471251	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	4q21.3		rs1471251-?	NR	3E-28				NR [~ 8900000] (imputed)	N
1256	chr4	87976386	87976387	rs10489044	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	4q21.3	AFF1	rs10489044-A	0.800916	8E-14		0.0184304	[0.014-0.023] unit increase	Affymetrix [NR] (imputed)	N
1256	chr4	87979211	87979212	rs4693802	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	4q21.3	NR	rs4693802-G	NR	2E-19		0.0249	[0.019-0.03] unit increase	Affymetrix [9000000] (imputed)	N
1256	chr4	87979211	87979212	rs4693802	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	4q21.3	NR	rs4693802-G	NR	5E-25		0.0301	[0.024-0.036] unit decrease	Affymetrix [9000000] (imputed)	N
1256	chr4	87980029	87980030	rs366327	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	4q21.3		rs366327-T	NR	1E-8		0.0676	[0.044-0.091] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1256	chr4	87980029	87980030	rs366327	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	4q21.3	AFF1	rs366327-T	0.184729	1E-8		0.06757675	[0.044-0.091] unit increase	Affymetrix [7288503] (imputed)	N
1256	chr4	87980747	87980748	rs17012334	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	4q21.3		rs17012334-?	NR	2E-46				NR [~ 8900000] (imputed)	N
1256	chr4	87982875	87982876	rs7660883	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x short total sleep time interaction (2df test)	2,990 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,300 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, at least 11,842 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,350 European ancestry controls, 4,047 Hispanic/Latino controls	at least 220 African American short sleepers, 326 East Asian ancestry short sleepers, up to 5,288 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 1,292 East Asian ancestry controls, up to 20,844 European ancestry controls, 10,062 Hispanic controls	4q21.3	AFF1	rs7660883-?	NR	2E-10		0.01194	[0.0079-0.016] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1256	chr4	87982875	87982876	rs7660883	31589552	Lind L	2019-10-07	Metab Syndr Relat Disord	Genome-Wide Association Study of the Metabolic Syndrome in UK Biobank.	Metabolic syndrome	291,107 European ancestry individuals	NA	4q21.3	AFF1	rs7660883-G	0.377013	6E-11		0.0443878	[0.031-0.058] unit decrease	Affymetrix [9463307] (imputed)	N
1256	chr4	87982875	87982876	rs7660883	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	HDL cholesterol levels	34,930 East Asian ancestry individuals, 187,167 European ancestry individuals	8,741 Chinese ancestry individuals	4q21.3	KLHL8	rs7660883-C	0.58	6E-6	(Asian initial, BMI adjusted)	0.036	[0.02-0.052] unit decrease	Affymetrix, Illumina [~ 1900000] (imputed)	N
1256	chr4	87982875	87982876	rs7660883	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	HDL cholesterol levels	25,169 East Asian ancestry individuals	45,953 East Asian ancestry individuals	4q21.3	KLHL8	rs7660883-C	0.58	5E-8	(BMI adjusted)	0.048	[0.03-0.066] unit decrease	Affymetrix, Illumina [~ 2400000] (imputed)	N
1256	chr4	87984330	87984331	rs28432336	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	4q21.3		rs28432336-G	0.37	3E-13		7.29	z score increase	Affymetrix [9061022] (imputed)	N
1256	chr4	87984330	87984331	rs28432336	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	4q21.3		rs28432336-G	NR	1E-34		0.0209	[0.018-0.024] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
1256	chr4	87984330	87984331	rs28432336	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	4q21.3	AFF1	rs28432336-G	0.378392	2E-9		0.0147366775	[0.0099-0.0196] unit increase	Affymetrix [93095623] (imputed)	N
1256	chr4	87984330	87984331	rs28432336	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	4q21.3	AFF1	rs28432336-G	0.37842	3E-46		0.032738455	[0.028-0.037] unit increase	Affymetrix [93095623] (imputed)	N
1256	chr4	87984330	87984331	rs28432336	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	4q21.3	AFF1	rs28432336-G	0.378384	4E-46		0.032652665	[0.028-0.037] unit increase	Affymetrix [93095623] (imputed)	N
1256	chr4	87984330	87984331	rs28432336	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	4q21.3	NR	rs28432336-G	0.377142	1E-59		0.031025	[0.027-0.035] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
1256	chr4	87984330	87984331	rs28432336	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	4q21.3	NR	rs28432336-G	0.377081	4E-56		0.030191	[0.026-0.034] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
1256	chr4	87984330	87984331	rs28432336	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Total bilirubin levels	110,207 Japanese ancestry individuals	NA	4q21.3	AFF1	rs28432336-?	NR	4E-8		0.02425	[0.016-0.033] unit increase novel	Illumina [6108953] (imputed)	N
1256	chr4	87985165	87985166	rs3775228	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	4q21.3		rs3775228-C	0.601718	9E-11		0.0262845	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
1256	chr4	87985165	87985166	rs3775228	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	4q21.3		rs3775228-C	0.601718	5E-18		0.0347799	[0.027-0.043] unit decrease	NR [11722792] (imputed)	N
1256	chr4	87985165	87985166	rs3775228	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	4q21.3		rs3775228-C	0.601718	2E-11		0.0269916	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
1256	chr4	87985165	87985166	rs3775228	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	4q21.3		rs3775228-C	0.601718	6E-20		0.0367933	[0.029-0.045] unit increase	NR [11722792] (imputed)	N
1256	chr4	87985165	87985166	rs3775228	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	4q21.3		rs3775228-C	0.601718	7E-12		0.0281222	[0.02-0.036] unit increase	NR [11722792] (imputed)	N
1256	chr4	87985165	87985166	rs3775228	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	4q21.3		rs3775228-C	0.601718	6E-11		0.0269134	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
1256	chr4	87985165	87985166	rs3775228	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	4q21.3		rs3775228-T	NR	6E-66		0.0354	[0.031-0.04] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
1256	chr4	87985165	87985166	rs3775228	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	4q21.3		rs3775228-T	NR	7E-23		0.0207	[0.017-0.025] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
1256	chr4	87985165	87985166	rs3775228	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	4q21.3	NR	rs3775228-C	0.600185	5E-25		0.020327	[0.016-0.024] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1256	chr4	87985165	87985166	rs3775228	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	4q21.3	SLC10A6, AFF1	rs3775228-?		7E-12				Affymetrix, Illumina [NR] (imputed)	N
1256	chr4	87985165	87985166	rs3775228	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	4q21.3	AFF1	rs3775228-C	0.600283	3E-62		0.0339811	[0.03-0.038] unit decrease	Affymetrix [NR] (imputed)	N
1256	chr4	87985165	87985166	rs3775228	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	4q21.3	AFF1	rs3775228-C	0.600579	2E-24		0.0199355	[0.016-0.024] unit increase	Affymetrix [NR] (imputed)	N
1256	chr4	87985165	87985166	rs3775228	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	4q21.3	AFF1	rs3775228-?	NR	1E-42		0.0368	[0.032-0.042] unit increase	Affymetrix [5701386] (imputed)	N
1256	chr4	87985165	87985166	rs3775228	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	4q21.3	AFF1	rs3775228-?	NR	2E-12		0.0184	[0.014-0.023] unit increase	Affymetrix [5701386] (imputed)	N
1256	chr4	87986394	87986395	rs13120301	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in IDL	115,082 European ancestry individuals	NA	4q21.3		rs13120301-C	0.581173	2E-9		0.0246289	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
1256	chr4	87986394	87986395	rs13120301	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	4q21.3	AFF1	rs13120301-T	0.4202	6E-10		0.02267446	[0.015-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1256	chr4	87996744	87996745	rs17605615	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q21.3	NR	rs17605615-G	0.607834	3E-23				Affymetrix, Illumina [17210439] (imputed)	N
1256	chr4	87996744	87996745	rs17605615	30670697	Kilpelainen TO	2019-01-22	Nat Commun	Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity.	Triglycerides x physical activity interaction (2df test)	7,294 African American inactive individuals, 12,832 African American active individuals, 1,352 Asian ancestry inactive individuals, 3,049 Asian ancestry active individuals, 20,622 European ancestry inactive individuals, 51,480 European ancestry active individuals, 2,166 Hispanic or Latin American inactive individuals, 3,486 Hispanic or Latin American active individuals	580 African American inactive individuals, 1,540 African American active individuals, 1,217 South African Black ancestry inactive individuals, 389 South African Black ancestry active individuals, 765 East Asian ancestry inactive individuals, 1,814 East Asian ancestry active individuals,  724 South Asian ancestry inactive individuals, 1,424 South Asian ancestry active individuals, 32,456 European ancestry inactive individuals, 49,510 European ancestry active individuals, 2,619 Hispanic inactive individuals, 8,803 Hispanic active individuals	4q21.3	NR	rs17605615-A	0.372	4E-19				Affymetrix, Illumina [at least 2500000] (imputed)	N
1256	chr4	88005202	88005203	rs236996	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Triglyceride levels	18,421 East Asian ancestry individuals	38,060 East Asian ancestry individuals	4q21.3	KLHL8	rs236996-A	0.43	2E-8	(BMI adjusted)	0.0413	[0.026-0.057] unit decrease	Affymetrix, Illumina [~ 2400000] (imputed)	N
1256	chr4	88007226	88007227	rs4693156	31902109	Li D	2020-01-04	Genes Genomics	Progressive effects of single-nucleotide polymorphisms on 16 phenotypic traits based on longitudinal data.	Hematological and biochemical traits	up to 6,843 Korean ancestry individuals	NA	4q21.3	AFF1	rs4693156-G	0.4453	9E-7	(Hemoglobin)	0.07622	NR unit increase	Affymetrix [305158]	N
1256	chr4	88007788	88007789	rs114565305	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	4q21.3	NR	rs114565305-T	NR	6E-10		0.0565	[0.039-0.074] unit decrease	Affymetrix [9000000] (imputed)	N
1256	chr4	88014345	88014346	rs2045592	33730874	Said MA	2021-03-18	Arterioscler Thromb Vasc Biol	Genome-Wide Association Study and Identification of a Protective Missense Variant on Lipoprotein(a) Concentration: Protective Missense Variant on Lipoprotein(a) Concentration.	Lipoprotein (a) levels	348,591 European ancestry individuals, 6,000 African ancestry individuals, 9,116 Asian ancestry individuals, 7,505 individuals		4q21.3	AFF1	rs2045592-C	NR	4E-9		0.00907	[0.0049-0.0133] nmol/l decrease	NR [19000000] (imputed)	N
1256	chr4	88016513	88016514	rs151450	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of white cells	171,996 European ancestry individuals	NA	4q21.3	AFF1	rs151450-A	0.3994	4E-27		0.03818492	[0.031-0.045] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1256	chr4	88018990	88018991	rs2035403	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	4q21.3		rs2035403-A	0.601685	2E-11		0.0273462	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
1256	chr4	88018990	88018991	rs2035403	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	4q21.3		rs2035403-A	0.601685	3E-10		0.0256953	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
1256	chr4	88018990	88018991	rs2035403	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in HDL	115,082 European ancestry individuals	NA	4q21.3		rs2035403-A	0.601685	6E-15		0.032197	[0.024-0.04] unit decrease	NR [11722792] (imputed)	N
1256	chr4	88018990	88018991	rs2035403	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	4q21.3		rs2035403-A	0.601685	2E-16		0.0333297	[0.025-0.041] unit increase	NR [11722792] (imputed)	N
1256	chr4	88018990	88018991	rs2035403	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	4q21.3		rs2035403-A	0.601682	4E-10		0.0262476	[0.018-0.034] unit increase	NR [11722792] (imputed)	N
1256	chr4	88018990	88018991	rs2035403	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	4q21.3		rs2035403-A	0.601685	4E-16		0.0335431	[0.025-0.042] unit increase	NR [11722792] (imputed)	N
1256	chr4	88018990	88018991	rs2035403	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	4q21.3		rs2035403-A	0.601685	8E-15		0.0311366	[0.023-0.039] unit increase	NR [11722792] (imputed)	N
1256	chr4	88018990	88018991	rs2035403	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	4q21.3		rs2035403-A	0.601685	2E-18		0.0364078	[0.028-0.045] unit increase	NR [11722792] (imputed)	N
1256	chr4	88018990	88018991	rs2035403	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	4q21.3		rs2035403-A	0.601685	1E-12		0.0282022	[0.02-0.036] unit increase	NR [11722792] (imputed)	N
1256	chr4	88018990	88018991	rs2035403	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	4q21.3	NR	rs2035403-A	NR	1E-21		0.037	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1256	chr4	88018990	88018991	rs2035403	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	4q21.3	NR	rs2035403-A	0.601	5E-19	(EA)	0.038	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1256	chr4	88018990	88018991	rs2035403	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	4q21.3	NR	rs2035403-A	NR	1E-11		0.024	unit increase	Affymetrix [at least 7091467] (imputed)	N
1256	chr4	88018990	88018991	rs2035403	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	4q21.3	NR	rs2035403-A	0.601	2E-10	(EA)	0.024	unit increase	Affymetrix [at least 7091467] (imputed)	N
1256	chr4	88018990	88018991	rs2035403	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	Triglycerides	up to 62,166 European ancestry individuals	NA	4q21.3	AFF1, KLHL8	rs2035403-G	0.39	2E-10		0.039	[0.027-0.051] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
1256	chr4	88022708	88022709	rs60695258	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	4q22.1	AFF1	rs60695258-T	NR	2E-17	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1256	chr4	88022708	88022709	rs60695258	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	4q22.1	AFF1	rs60695258-T	NR	1E-33				Affymetrix, Illumina [NR] (imputed)	N
1256	chr4	88022708	88022709	rs60695258	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	4q22.1	AFF1	rs60695258-T	NR	1E-15	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
1256	chr4	88022708	88022709	rs60695258	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	4q22.1	AFF1	rs60695258-T	NR	6E-20	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1256	chr4	88022708	88022709	rs60695258	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	4q22.1	AFF1	rs60695258-T	NR	5E-36				Affymetrix, Illumina [NR] (imputed)	N
1256	chr4	88022708	88022709	rs60695258	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	4q22.1	AFF1	rs60695258-T	NR	1E-15	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
1256	chr4	88022708	88022709	rs60695258	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	4q22.1	AFF1	rs60695258-T	NR	5E-9	(Asian)	0.016	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1256	chr4	88022708	88022709	rs60695258	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	4q22.1	AFF1	rs60695258-T	NR	2E-20		0.016	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1256	chr4	88022708	88022709	rs60695258	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	4q22.1	AFF1	rs60695258-T	NR	1E-10	(EA)	0.017	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1256	chr4	88022708	88022709	rs60695258	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	4q22.1	AFF1	rs60695258-T	NR	7E-15		0.016	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1256	chr4	88022708	88022709	rs60695258	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	4q22.1	AFF1	rs60695258-T	NR	3E-8	(Asian)	0.016	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1256	chr4	88022708	88022709	rs60695258	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	4q22.1	AFF1	rs60695258-T	NR	3E-7	(EA)	0.018	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1256	chr4	88022708	88022709	rs60695258	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	4q22.1	AFF1	rs60695258-T	NR	2E-7	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1256	chr4	88022708	88022709	rs60695258	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	4q22.1	AFF1	rs60695258-T	NR	1E-11				Affymetrix, Illumina [NR] (imputed)	N
1256	chr4	88022708	88022709	rs60695258	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	4q22.1	AFF1	rs60695258-T	NR	1E-8	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1256	chr4	88022708	88022709	rs60695258	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	4q22.1	AFF1	rs60695258-T	NR	1E-12				Affymetrix, Illumina [NR] (imputed)	N
1256	chr4	88022708	88022709	rs60695258	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	4q22.1	AFF1	rs60695258-T	NR	3E-8		0.005	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1256	chr4	88022708	88022709	rs60695258	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	4q22.1	AFF1	rs60695258-T	NR	9E-9		0.005546	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1256	chr4	88022708	88022709	rs60695258	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	4q22.1	AFF1	rs60695258-T	0.3992	3E-16		0.02947209	[0.022-0.037] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1256	chr4	88030260	88030261	rs442177	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	4q22.1	AFF1	rs442177-T	0.5892	3E-11		0.4296	[0.3-0.56] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1256	chr4	88030260	88030261	rs442177	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	Triglyceride levels	up to 23,508 African ancestry individuals, 4,649 Asian ancestry individuals, up to 77,047 European ancestry individuals, 6,705 Hispanic individuals	NA	4q22.1		rs442177-T	0.568	4E-9		0.0132	[0.0087-0.0177] unit increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1256	chr4	88030260	88030261	rs442177	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	4q22.1		rs442177-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1256	chr4	88030260	88030261	rs442177	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	4q22.1	NR	rs442177-G	NR	4E-17		0.032	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1256	chr4	88030260	88030261	rs442177	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	4q22.1	NR	rs442177-G	0.404	5E-15	(EA)	0.033	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1256	chr4	88030260	88030261	rs442177	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	4q22.1	NR	rs442177-G	NR	2E-12		0.024	unit increase	Affymetrix [at least 7091467] (imputed)	N
1256	chr4	88030260	88030261	rs442177	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	4q22.1	NR	rs442177-G	0.404	2E-8	(EA)	0.022	unit increase	Affymetrix [at least 7091467] (imputed)	N
1256	chr4	88030260	88030261	rs442177	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	4q22.1	AFF1	rs442177-T	0.5937	1E-17		0.03088176	[0.024-0.038] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1256	chr4	88030260	88030261	rs442177	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Triglycerides	94,595 European ancestry individuals	93,982 European ancestry individuals	4q22.1	KLHL8	rs442177-G	0.42	1E-18		0.031	[NR] mg/dL decrease	NR [NR] (imputed)	N
1256	chr4	88030260	88030261	rs442177	20864672	Waterworth DM	2010-09-23	Arterioscler Thromb Vasc Biol	Genetic variants influencing circulating lipid levels and risk of coronary artery disease.	Triglycerides	up to 17,723 European ancestry individuals	up to 37,774 European ancestry individuals, up to 9,665 Indian Asian ancestry individuals	4q22.1	AFF1	rs442177-A	0.50	3E-10		0.02	[0.01-0.03] unit increase	Affymetrix, Illumina, Perlegen [2155369] (imputed)	N
1256	chr4	88030260	88030261	rs442177	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	Triglycerides	96,598 European ancestry individuals	NA	4q22.1	KLHL8, AFF1	rs442177-G	0.41	9E-12		2.25	[1.51-2.99] mg/dL decrease	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1256	chr4	88036377	88036378	rs142319329	28234671	Nandakumar P	2017-07-01	J Hypertens	Rare coding variants associated with blood pressure variation in 15 914 individuals of African ancestry.	Diastolic blood pressure	11,156 African American individuals, 4,758 African ancestry individuals	NA	4q22.1	AFF1	rs142319329-?	0.000251	3E-7		21.1	[13.02-29.18] unit increase	Illumina [105487]	N
1256	chr4	88039000	88039000	rs3836599	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	124,341 East Asian ancestry individuals	NA	4q22.1		rs3836599-TC	0.55578	9E-9		0.0219055	[0.014-0.029] unit decrease	Illumina [13476323] (imputed)	N
1256	chr4	88039090	88039091	rs3775211	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	4q22.1		rs3775211-C	NR	4E-20		0.0197	[0.016-0.024] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
1256	chr4	88039461	88039461	rs2307789	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	4q22.1		rs2307789-C	0.38273	3E-8		0.02358	[0.015-0.032] unit increase	NR [11722792] (imputed)	N
1256	chr4	88040185	88040185	rs11280827	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	91,908 East Asian ancestry individuals	NA	4q22.1		rs11280827-TCCAGCTG	0.552041	9E-10		0.0276904	[0.019-0.037] unit decrease	Illumina [13469940] (imputed)	N
1256	chr4	88040908	88040909	rs342437	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q22.1	NR	rs342437-G	0.599478	2E-62				Affymetrix, Illumina [24653286] (imputed)	N
1256	chr4	88040908	88040909	rs342437	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q22.1	NR	rs342437-G	0.599621	3E-60				Affymetrix, Illumina [24558453] (imputed)	N
1256	chr4	88040908	88040909	rs342437	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Hematocrit	108,757 Japanese ancestry individuals	NA	4q22.1	AFF1	rs342437-?	NR	8E-13		0.03035	[0.022-0.039] unit decrease novel	Illumina [6108953] (imputed)	N
1256	chr4	88044335	88044336	rs13108043	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	4q22.1	AFF1	rs13108043-A	0.1876	1E-11		0.03093505	[0.022-0.04] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1256	chr4	88046945	88046946	rs3775209	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	111,667 East Asian ancestry individuals	NA	4q22.1		rs3775209-A	0.402335	2E-14		0.0312052	[0.023-0.039] unit increase	Illumina [13471903] (imputed)	N
1256	chr4	88049849	88049850	rs1037814	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	4q22.1	AFF1	rs1037814-T		4E-33		0.027	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
1256	chr4	88049849	88049850	rs1037814	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Hemoglobin	108,769 Japanese ancestry individuals	NA	4q22.1	AFF1	rs1037814-?	NR	2E-11		0.02849	[0.02-0.037] unit decrease novel	Illumina [6108953] (imputed)	N
1256	chr4	88049849	88049850	rs1037814	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Triglyceride levels	28,183 East Asian ancestry individuals, 177,861 European ancestry individuals	10,857 Chinese ancestry individuals	4q22.1	KLHL8	rs1037814-T	0.419	3E-20	(Trans-ethnic initial)	0.0307	[0.024-0.037] unit decrease (EA Beta values)	Affymetrix, Illumina [up to 1900000] (imputed)	N
1256	chr4	88051907	88051908	rs342468	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	4q22.1		rs342468-A	NR	1E-18		0.0154	[0.012-0.019] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
1256	chr4	88052218	88052219	rs342467	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	149,861 East Asian ancestry individuals	NA	4q22.1	NR	rs342467-T	0.442009	1E-9		0.02248	[0.015-0.03] SD units increase	Affymetrix, Illumina [16709126] (imputed)	N
1256	chr4	88052218	88052219	rs342467	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	142,940 East Asian ancestry individuals	NA	4q22.1	NR	rs342467-T	0.443304	3E-10		0.023612	[0.016-0.031] SD units increase	Affymetrix, Illumina [16289021] (imputed)	N
1256	chr4	88052218	88052219	rs342467	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x long total sleep time interaction (2df test)	at least 2,926 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, at least 7,664 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,906 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 31,986 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 317 East Asian ancestry long sleepers, up to 5,171 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 928 African American controls, 1,301 East Asian ancestry controls, up to 20,961 European ancestry controls, 10,064 Hispanic controls	4q22.1	AFF1	rs342467-?	NR	1E-12		0.01356	[0.0096-0.0175] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
1256	chr4	88053084	88053085	rs342466	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	4q22.1		rs342466-C	0.39	3E-14		7.59	z score increase	Affymetrix [9061022] (imputed)	N
1256	chr4	88053084	88053085	rs342466	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	153,512 East Asian ancestry individuals	NA	4q22.1		rs342466-T	0.555674	3E-9		0.018666	[0.013-0.025] unit decrease	Illumina [13479135] (imputed)	N
1256	chr4	88053084	88053085	rs342466	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	152,447 East Asian ancestry individuals	NA	4q22.1		rs342466-T	0.555677	3E-13		0.0224701	[0.016-0.029] unit decrease	Illumina [13478948] (imputed)	N
1256	chr4	88053084	88053085	rs342466	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	153,015 East Asian ancestry individuals	NA	4q22.1		rs342466-T	0.555508	1E-13		0.0232491	[0.017-0.029] unit decrease	Illumina [13478961] (imputed)	N
1256	chr4	88053455	88053456	rs141992823	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean corpuscular hemoglobin concentration	443,081 European ancestry individuals	NA	4q22.1		rs141992823-?	NR	3E-11		0.323683	[0.22-0.42] unit decrease	NR [9800000] (imputed)	N
1256	chr4	88054631	88054632	rs342465	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	4q22.1	NR	rs342465-T	0.2009	2E-8				NR [9056863] (imputed)	N
1256	chr4	88057352	88057353	rs1408	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of monounsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	4q22.1		rs1408-G	0.4207	5E-12		0.0277559	[0.02-0.036] unit decrease	NR [11722792] (imputed)	N
1256	chr4	88057352	88057353	rs1408	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	4q22.1	NR	rs1408-G	0.421741	7E-19		0.0114428	[0.0089-0.014] unit increase	Affymetrix [16578495] (imputed)	N
1256	chr4	88057352	88057353	rs1408	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	4q22.1	AFF1	rs1408-A	0.6123	8E-28		0.0305	[0.025-0.036] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1256	chr4	88057352	88057353	rs1408	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	White blood cell count (basophil)	62,076 Japanese ancestry individuals	NA	4q22.1	AFF1	rs1408-?	NR	1E-8		0.03229	[0.021-0.043] unit decrease novel	Illumina [6108953] (imputed)	N
1256	chr4	88061352	88061353	rs17030453	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	4q22.1		rs17030453-G	NR	2E-9		0.0182	[0.012-0.024] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
1256	chr4	88061352	88061353	rs17030453	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	4q22.1	NR	rs17030453-G	NR	1E-10		0.0207	[0.014-0.027] unit increase	Affymetrix [9000000] (imputed)	N
1256	chr4	88061352	88061353	rs17030453	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	4q22.1	AFF1	rs17030453-G	0.187909	2E-15		0.024239356	[0.018-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
1256	chr4	88061352	88061353	rs17030453	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	4q22.1	AFF1	rs17030453-G	0.187882	1E-12		0.0278147	[0.023-0.033] unit increase	Affymetrix [93095623] (imputed)	N
1256	chr4	88061352	88061353	rs17030453	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	4q22.1	AFF1	rs17030453-G	0.187896	4E-15		0.022810739	[0.017-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1256	chr4	88061352	88061353	rs17030453	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	4q22.1	NR	rs17030453-G	0.188678	6E-33		0.028296	[0.024-0.033] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1256	chr4	88061352	88061353	rs17030453	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	4q22.1		rs17030453-?	NR	4E-30				NR [~ 8900000] (imputed)	N
1256	chr4	88061947	88061948	rs11539663	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	4q22.1	NR	rs11539663-?	NR	6E-8		5.427	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1256	chr4	88064430	88064431	rs10023050	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	4q22.1		rs10023050-G	NR	5E-20		0.0183	[0.014-0.022] unit increase	Affymetrix, Illumina [20535842] (imputed)	N
1256	chr4	88064430	88064431	rs10023050	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	4q22.1		rs10023050-G	NR	2E-36		0.0207	[0.018-0.024] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
1256	chr4	88065155	88065156	rs765387398	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	4q22.1		rs765387398-?	NR	1E-13		0.208736	[0.15-0.27] unit increase	Affymetrix [20259828] (imputed)	N
1256	chr4	88065921	88065922	rs35658582	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q22.1	NR	rs35658582-T	0.182869	3E-31				Affymetrix, Illumina [24332387] (imputed)	N
1256	chr4	88071227	88071228	rs342442	27515689	Kerns SL	2016-07-20	EBioMedicine	Meta-analysis of Genome Wide Association Studies Identifies Genetic Markers of Late Toxicity Following Radiotherapy for Prostate Cancer.	Response to radiotherapy in prostate cancer (toxicity, urinary frequency)	1,409 European ancestry individuals	NA	4q22.1	intergenic	rs342442-?	0.62	4E-7		1.9607843	[1.52-2.56]	NR [~ 38000000] (imputed)	N
1256	chr4	88076128	88076129	rs115694618	23568457	Wade TD	2013-04-09	Int J Eat Disord	Genetic variants associated with disordered eating.	Bulimia nervosa	151 European ancestry female cases, 2,291 European ancestry female controls	NA	4q22.1	KLHL8, AFF1, C4orf36, HSD17B11, HSD17B13	rs115694618-A	0.979	4E-6		0.123	[0.07-0.176] unit decrease	Illumina [6150213] (imputed)	N
1257	chr4	88080970	88080971	rs17703797	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	4q22.1	NR	rs17703797-C	NR	4E-18		0.0321	[0.025-0.039] unit decrease	Affymetrix [9000000] (imputed)	N
1257	chr4	88080970	88080971	rs17703797	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	4q22.1	NR	rs17703797-C	NR	5E-20		0.0356	[0.028-0.043] unit increase	Affymetrix [9000000] (imputed)	N
1257	chr4	88149376	88149377	rs7683063	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	4q22.1		rs7683063-A	0.4	5E-9		5.85	z score increase	Affymetrix [9061022] (imputed)	N
1257	chr4	88151992	88151993	rs11097129	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	4q22.1	KLHL8, HSD17B13	rs11097129-G	NR	8E-6		0.099843	[0.056-0.144] unit decrease	Illumina [at least 950000] (imputed)	N
1257	chr4	88157506	88157507	rs188023546	35131881	Testori A	2022-02-07	Cancer Epidemiol Biomarkers Prev	Genetic analysis in African American children supports ancestry specific neuroblastoma susceptibility.	Neuroblastoma	254 African American cases, 2,990 African American controls	NA	4q22.1		rs188023546-T	NR	8E-6		1.8651	unit increase	Illumina [NR] (imputed)	N
1257	chr4	88160017	88160018	rs10006766	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q22.1	NR	rs10006766-G	0.2213	4E-11	(HSD17B13)	0.2665	NR unit decrease	Illumina [1671387] (imputed)	N
1257	chr4	88160139	88160140	rs10029254	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	4q22.1	KLHL8	rs10029254-T	0.2088	2E-14		0.0264	[0.02-0.033] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1257	chr4	88168177	88168178	rs35469118	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Triglyceride levels	105,597 Japanese ancestry individuals	NA	4q22.1	KLHL8, MIR5705	rs35469118-?	NR	9E-15		0.03525	[0.026-0.044] unit increase novel	Illumina [6108953] (imputed)	N
1257	chr4	88173691	88173692	rs7656630	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Triglyceride levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	4q22.1	KLHL8, MIR5705	rs7656630-?		4E-14		0.028	[0.021-0.035] unit increase	Illumina [31500000] (imputed)	N
1257	chr4	88176029	88176030	rs10001545	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	150,068 East Asian ancestry individuals	NA	4q22.1		rs10001545-A	0.356112	4E-18		0.0314494	[0.024-0.039] unit decrease	Illumina [13478956] (imputed)	N
1257	chr4	88176029	88176030	rs10001545	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	150,545 East Asian ancestry individuals	NA	4q22.1		rs10001545-A	0.356038	4E-18		0.0306958	[0.024-0.038] unit decrease	Illumina [13478866] (imputed)	N
1257	chr4	88176029	88176030	rs10001545	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Aspartate aminotransferase levels	134,154 Japanese ancestry individuals	NA	4q22.1	KLHL8, MIR5705	rs10001545-?	NR	1E-16		0.03228	[0.025-0.04] unit decrease novel	Illumina [6108953] (imputed)	N
1257	chr4	88176029	88176030	rs10001545	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Alanine transaminase levels	134,182 Japanese ancestry individuals	NA	4q22.1	KLHL8, MIR5705	rs10001545-?	NR	1E-16		0.03272	[0.025-0.04] unit decrease	Illumina [6108953] (imputed)	N
1257	chr4	88176382	88176383	rs28664118	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Aspartate aminotransferase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	4q22.1	KLHL8, MIR5705	rs28664118-?		4E-15		0.0305	[0.023-0.038] unit decrease	Illumina [31500000] (imputed)	N
1257	chr4	88177036	88177037	rs11935592	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Alanine aminotransferase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	4q22.1	KLHL8, MIR5705	rs11935592-?		3E-17		0.0313	[0.024-0.039] unit increase	Illumina [31500000] (imputed)	N
1257	chr4	88178918	88178919	rs6834488	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	4q22.1		rs6834488-?	NR	2E-12		0.01445	[0.01-0.018] unit decrease	NR [6912294] (imputed)	N
1257	chr4	88180630	88180631	rs6847980	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large HDL	115,082 European ancestry individuals	NA	4q22.1		rs6847980-G	0.62367	8E-9		0.0233839	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
1257	chr4	88180630	88180631	rs6847980	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	4q22.1		rs6847980-G	0.62367	1E-9		0.0259798	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
1257	chr4	88181490	88181491	rs10020067	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium HDL	115,082 European ancestry individuals	NA	4q22.1		rs10020067-C	0.618559	7E-17		0.034765	[0.027-0.043] unit decrease	NR [11722792] (imputed)	N
1257	chr4	88181490	88181491	rs10020067	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	4q22.1		rs10020067-C	0.618559	3E-11		0.0271278	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
1257	chr4	88181490	88181491	rs10020067	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small HDL	115,082 European ancestry individuals	NA	4q22.1		rs10020067-C	0.618559	3E-8		0.0233889	[0.015-0.032] unit decrease	NR [11722792] (imputed)	N
1257	chr4	88181490	88181491	rs10020067	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	4q22.1		rs10020067-C	0.618559	6E-9		0.0245294	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
1257	chr4	88181490	88181491	rs10020067	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	4q22.1		rs10020067-C	0.618548	2E-8		0.0228122	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
1257	chr4	88181490	88181491	rs10020067	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	4q22.1		rs10020067-C	0.618548	4E-8		0.0223799	[0.014-0.03] unit increase	NR [11722792] (imputed)	N
1257	chr4	88181490	88181491	rs10020067	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	4q22.1	RP11-529H2.1	rs10020067-A	0.380977	1E-17		0.01986019	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1257	chr4	88183816	88183817	rs71633358	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	4q22.1	RP11-529H2.1	rs71633358-C	0.292264	5E-15		0.02006728	[0.015-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1257	chr4	88183819	88183820	rs71633359	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	4q22.1	MIR5705	rs71633359-T	0.681642	1E-96		0.00889967	[0.0081-0.0097] unit increase	Affymetrix [13995440] (imputed)	N
1257	chr4	88183819	88183820	rs71633359	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	4q22.1	RP11-529H2.1	rs71633359-C	0.318648	2E-22		0.024101362	[0.019-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1257	chr4	88183819	88183820	rs71633359	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	4q22.1	NR	rs71633359-C	0.31849000000000005	4E-16		0.0226012	[0.017-0.028] unit increase	Affymetrix [16585745] (imputed)	N
1257	chr4	88183819	88183820	rs71633359	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	4q22.1	RP11-529H2.1	rs71633359-C	0.318	6E-10		0.02510314	[0.017-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
1257	chr4	88185406	88185407	rs13108668	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs13108668-G	0.320073	6E-17		0.0795654	[0.06-0.099] decrease	Affymetrix [11014269] (imputed)	N
1257	chr4	88186440	88186441	rs28679728	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	4q22.1		rs28679728-G	0.717	3E-16				Affymetrix [10369434] (imputed)	N
1257	chr4	88186508	88186509	rs7694379	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q22.1	NR	rs7694379-A	0.4059	5E-16	(HSD17B13)	0.2926	NR unit decrease	Illumina [1671387] (imputed)	N
1257	chr4	88186508	88186509	rs7694379	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Forns index in high alcohol intake	33,437 British ancestry individuals	NA	4q22.1		rs7694379-?	0.4327	4E-6		0.002202	unit decrease	NR [6200000] (imputed)	N
1257	chr4	88186508	88186509	rs7694379	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Fibrosis-4 index in high alcohol intake	33,324 British ancestry individuals	NA	4q22.1		rs7694379-?	0.4327	4E-6		0.005134	unit decrease	NR [6200000] (imputed)	N
1257	chr4	88186508	88186509	rs7694379	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Aspartate transaminase levels in high alcohol intake	34,101 British ancestry individuals	NA	4q22.1		rs7694379-?	0.4327	1E-13		0.007591	unit decrease	NR [6200000] (imputed)	N
1257	chr4	88186508	88186509	rs7694379	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Aspartate aminotransferase platelet ratio index in high alcohol intake	33,330 British ancestry individuals	NA	4q22.1		rs7694379-?	0.4327	9E-16		0.01109	unit decrease	NR [6200000] (imputed)	N
1257	chr4	88186508	88186509	rs7694379	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Alanine transaminase levels in high alcohol intake	34,238 British ancestry individuals	NA	4q22.1		rs7694379-?	0.4327	2E-16		0.01182	unit decrease	NR [6200000] (imputed)	N
1257	chr4	88186508	88186509	rs7694379	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	4q22.1	NR	rs7694379-G	0.567223	6E-71		0.0200418	[0.018-0.022] unit increase	Affymetrix [16582621] (imputed)	N
1257	chr4	88186508	88186509	rs7694379	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	4q22.1	NR	rs7694379-G	0.567223	4E-66		0.020636	[0.018-0.023] unit increase	Affymetrix [16582614] (imputed)	N
1257	chr4	88186508	88186509	rs7694379	22139419	Gieger C	2011-11-30	Nature	New gene functions in megakaryopoiesis and platelet formation.	Platelet count	38,891 European ancestry individuals, 1,661 Val Borbera (founder/genetic isolate) individuals, 521 Carlantino (founder/genetic isolate) individuals, 1,198 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,213 South Tyrolean (founder/genetic isolate) individuals, 890 Sorbian (founder/genetic isolate) individuals, 4,292 Sardinian (founder/genetic isolate) individuals	Up to 16,949 European ancestry individuals, 854 Cliento (founder/genetic isolate) individuals, 1,035 Talana (founder/genetic isolate) individuals	4q22.1	HSD17B13	rs7694379-A	NR	9E-9		2.129	[1.4-2.85] 10^9/l increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1257	chr4	88195493	88195494	rs13142655	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	4q22.1		rs13142655-T	NR	1E-56		0.0309	[0.027-0.035] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
1257	chr4	88201551	88201552	rs28657030	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	4q22.1		rs28657030-?	NR	4E-8		0.00557535	[0.0036-0.0076] unit increase	NR [NR]	N
1257	chr4	88203827	88203828	rs13150068	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	4q22.1		rs13150068-A	0.563008	2E-8		0.0225483	[0.015-0.03] unit decrease	NR [11722792] (imputed)	N
1257	chr4	88203827	88203828	rs13150068	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	4q22.1		rs13150068-G	NR	5E-31		0.0224	[0.019-0.026] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1257	chr4	88203827	88203828	rs13150068	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	4q22.1	NR	rs13150068-A	0.563263	1E-112		0.0182465	[0.017-0.02] unit increase	Affymetrix [16582909] (imputed)	N
1257	chr4	88203827	88203828	rs13150068	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	4q22.1	NR	rs13150068-A	0.564062	6E-47		0.016714	[0.014-0.019] unit increase	Affymetrix [16585854] (imputed)	N
1257	chr4	88203827	88203828	rs13150068	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	4q22.1	NR	rs13150068-A	0.563263	7E-95		0.0188174	[0.017-0.021] unit increase	Affymetrix [16582965] (imputed)	N
1257	chr4	88203827	88203828	rs13150068	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	4q22.1	NR	rs13150068-A	0.564062	6E-36		0.017217	[0.014-0.02] unit increase	Affymetrix [16585866] (imputed)	N
1257	chr4	88208449	88208450	rs34182956	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	4q22.1		rs34182956-T	0.806936	4E-8		0.0287194	[0.018-0.039] unit increase	NR [11722792] (imputed)	N
1257	chr4	88208449	88208450	rs34182956	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	4q22.1	intergenic	rs34182956-C		1E-10		0.017	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
1257	chr4	88209014	88209015	rs6849526	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	4q22.1	NR	rs6849526-A	0.433986	4E-32		0.021832	[0.018-0.025] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1258	chr4	88212544	88212545	rs13141053	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	4q22.1	MIR5705	rs13141053-G	0.569227	1E-17		0.00442956	[0.0034-0.0054] unit increase	Affymetrix [13995440] (imputed)	N
1258	chr4	88212544	88212545	rs13141053	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x short total sleep time interaction (2df test)	2,990 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,300 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, at least 11,842 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,350 European ancestry controls, 4,047 Hispanic/Latino controls	at least 220 African American short sleepers, 326 East Asian ancestry short sleepers, up to 5,288 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 1,292 East Asian ancestry controls, up to 20,844 European ancestry controls, 10,062 Hispanic controls	4q22.1	AFF1	rs13141053-?	NR	2E-11		0.01487	[0.011-0.019] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1258	chr4	88212544	88212545	rs13141053	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x long total sleep time interaction (2df test)	at least 2,926 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, at least 7,664 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,906 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 31,986 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 317 East Asian ancestry long sleepers, up to 5,171 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 928 African American controls, 1,301 East Asian ancestry controls, up to 20,961 European ancestry controls, 10,064 Hispanic controls	4q22.1	AFF1	rs13141053-?	NR	3E-12		0.01382	[0.0095-0.0181] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1258	chr4	88212721	88212722	rs13141441	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	4q22.1		rs13141441-A	NR	1E-69		0.036	[0.032-0.04] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
1258	chr4	88213807	88213808	rs6834314	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Aspartate aminotransferase levels	386,570 British ancestry individuals, 10,617 Asian or Asian British individuals, 7,426 Black or Black British individuals, 2,321 Chinese ancestry individuals	NA	4q22.1	HSD17B13	rs6834314-?	NR	2E-37		0.0046	[0.004-0.0052] unit decrease	Affymetrix [21347608] (imputed)	N
1258	chr4	88213807	88213808	rs6834314	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Alanine aminotransferase levels	387,859 British ancestry individuals, 10,635 Asian or Asian British individuals, 7,468 Black or Black British individuals, 2,338 Chinese ancestry individuals	NA	4q22.1	HSD17B13	rs6834314-?	NR	2E-54		0.0087	[0.0077-0.0097] unit decrease	Affymetrix [21347608] (imputed)	N
1258	chr4	88213807	88213808	rs6834314	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	4q22.1	KLHL8, HSD17B13	rs6834314-A	0.72	2E-57		16.0	z-score increase	Affymetrix [4314223] (imputed)	N
1258	chr4	88213807	88213808	rs6834314	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	4q22.1	KLHL8, HSD17B13	rs6834314-A	0.72	5E-69		17.6	z-score increase	Affymetrix [4312306] (imputed)	N
1258	chr4	88213807	88213808	rs6834314	33310085	Emdin CA	2020-12-10	Gastroenterology	Association of genetic variation with cirrhosis: a multi-trait genome-wide association and gene-environment interaction study.	Cirrhosis (multi-trait analysis)	4,829 European, African, Asian and unknown ancestry cases, 72,705 European, African, Asian and unknown ancestry controls, 362,539 European, African, Asian and unknown ancestry individuals with ALT measurements	3,554 European, African, Asian and unknown ancestry cases, 343,286 European, African, Asian and unknown ancestry controls	4q22.1	HSD17B13	rs6834314-G	0.26	3E-54				Affymetrix, Illumina [3163456] (imputed)	N
1258	chr4	88213807	88213808	rs6834314	22001757	Chambers JC	2011-10-16	Nat Genet	Genome-wide association study identifies loci influencing concentrations of liver enzymes in plasma.	Liver enzyme levels (alanine transaminase)	Up to 52,350 European ancestry individuals, up to 8,739 Indian Asian ancestry individuals	NA	4q22.1	HSD17B13, MAPK10	rs6834314-A	0.75	3E-9		2.6	[1.90-3.40] % increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1258	chr4	88213883	88213884	rs6811902	34337532	Fantus RJ	2021-05-25	Eur Urol Open Sci	Genetic Susceptibility for Low Testosterone in Men and Its Implications in Biology and Screening: Data from the UK Biobank.	Low testosterone levels	13,409 European ancestry male cases, 98,267 European ancestry male controls	4,426 European ancestry male cases, 32,800 European ancestry male controls	4q22.1	NR	rs6811902-C	0.43	1E-8		1.07	NR	NR [8853336] (imputed)	N
1258	chr4	88214839	88214840	rs10026092	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q22.1	NR	rs10026092-C	0.4913	4E-13	(HSD17B13)	0.2601	NR unit decrease	Illumina [1671387] (imputed)	N
1258	chr4	88217222	88217223	rs13133311	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q22.1	NR	rs13133311-A	0.3902	5E-18	(HSD17B13)	0.3134	NR unit decrease	Illumina [1671387] (imputed)	N
1258	chr4	88226230	88226231	rs11735092	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	4q22.1		rs11735092-T	0.562899	1E-10		0.0259928	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
1258	chr4	88226230	88226231	rs11735092	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q22.1	NR	rs11735092-C	0.40623	9E-37				Affymetrix, Illumina [24588908] (imputed)	N
1258	chr4	88226230	88226231	rs11735092	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	4q22.1	NR	rs11735092-T	0.562334	9E-35		0.0371495	[0.031-0.043] unit increase	Affymetrix [16577313] (imputed)	N
1258	chr4	88226634	88226634	rs536859514	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	4q22.1	NR	rs536859514-CT	0.336245	7E-10		0.00599028	[0.0042-0.0078] unit increase	Affymetrix [16582909] (imputed)	N
1258	chr4	88226634	88226634	rs536859514	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	4q22.1	NR	rs536859514-CT	0.336245	1E-9		0.00650722	[0.0045-0.0085] unit increase	Affymetrix [16582965] (imputed)	N
1258	chr4	88230099	88230100	rs10433937	32853455	Schwantes-An TH	2020-08-27	Hepatology	Genome-wide association study and meta-analysis on alcohol-related liver cirrhosis identifies novel genetic risk factors.	Cirrhosis (alcohol related)	1,128 European ancestry cases, 849 European ancestry heavy-drinking controls	up to 2,369 European ancestry cases, up to 10,434 European ancestry heavy-drinking controls	4q22.1	HSD17B13	rs10433937-T	NR	3E-10		0.2556	[0.18-0.34] unit increase	Illumina [9377111] (imputed)	N
1258	chr4	88230491	88230492	rs6531971	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	4q22.1		rs6531971-?	NR	9E-11				NR [~ 8900000] (imputed)	N
1258	chr4	88230500	88230501	rs111297471	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	Triglyceride levels	291,107 British ancestry individuals	NA	4q22.1	HSD17B13	rs111297471-C	0.32010499	2E-13		0.016621	[0.012-0.021] unit decrease	Affymetrix [9463307] (imputed)	N
1258	chr4	88231139	88231140	rs10433879	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	4q22.1		rs10433879-C	0.338897	2E-10		0.0222047	[0.015-0.029] unit increase	Illumina [13478928] (imputed)	N
1258	chr4	88231139	88231140	rs10433879	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	145,648 East Asian ancestry individuals	NA	4q22.1	NR	rs10433879-G	0.663817	3E-11		0.026157	[0.018-0.034] SD units decrease	Affymetrix, Illumina [16710488] (imputed)	N
1258	chr4	88231392	88231392	rs72613567	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	4q22.1	NR	rs72613567-TA	NR	1E-13		0.0199	[0.015-0.025] unit increase	Affymetrix [9000000] (imputed)	N
1258	chr4	88231392	88231392	rs72613567	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	4q22.1	NR	rs72613567-TA	NR	3E-55		0.0442	[0.039-0.05] unit decrease	Affymetrix [9000000] (imputed)	N
1258	chr4	88231392	88231392	rs72613567	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	4q22.1	NR	rs72613567-TA	NR	2E-9		0.0162	[0.011-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
1258	chr4	88231392	88231392	rs72613567	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	4q22.1	NR	rs72613567-TA	NR	2E-28		0.0297	[0.024-0.035] unit increase	Affymetrix [9000000] (imputed)	N
1258	chr4	88231392	88231392	rs72613567	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	4q22.1	NR	rs72613567-TA	NR	4E-38		0.0347	[0.029-0.04] unit decrease	Affymetrix [9000000] (imputed)	N
1258	chr4	88231392	88231392	rs72613567	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	4q22.1	NR	rs72613567-TA	NR	4E-52		0.0408	[0.036-0.046] unit decrease	Affymetrix [9000000] (imputed)	N
1258	chr4	88231392	88231392	rs72613567	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Aspartate transaminase levels in high alcohol intake	34,101 British ancestry individuals	NA	4q22.1		rs72613567-?	0.2789	1E-14		0.008696	unit decrease	NR [6200000] (imputed)	N
1258	chr4	88231392	88231392	rs72613567	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Aspartate aminotransferase platelet ratio index in high alcohol intake	33,330 British ancestry individuals	NA	4q22.1		rs72613567-?	0.2789	6E-15		0.01192	unit decrease	NR [6200000] (imputed)	N
1258	chr4	88231392	88231392	rs72613567	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Alanine transaminase levels in high alcohol intake	34,238 British ancestry individuals	NA	4q22.1		rs72613567-?	0.2789	1E-17		0.01354	unit decrease	NR [6200000] (imputed)	N
1258	chr4	88231393	88231393	rs1425053952	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q22.1	NR	rs1425053952-?	0.2422	1E-14	(HSD17B13)	0.3108	NR unit decrease	Illumina [1671387] (imputed)	N
1258	chr4	88231428	88231429	rs62305723	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	4q22.1	NR	rs62305723-A	NR	1E-11		0.0348	[0.025-0.045] unit decrease	Affymetrix [9000000] (imputed)	N
1258	chr4	88232509	88232510	rs9992651	32298765	Anstee QM	2020-04-13	J Hepatol	Genome-wide association study of non-alcoholic fatty liver and steatohepatitis in a histologically-characterised cohort.	Nonalcoholic steatohepatitis	836 European ancestry cases, 17,781 European ancestry controls	NA	4q22.1	HSD17B13	rs9992651-?	NR	3E-7		1.3927578	[1.23-1.58]	Illumina [7412560] (imputed)	N
1258	chr4	88239608	88239609	rs13118664	32298765	Anstee QM	2020-04-13	J Hepatol	Genome-wide association study of non-alcoholic fatty liver and steatohepatitis in a histologically-characterised cohort.	Nonalcoholic steatohepatitis	836 European ancestry cases, 17,781 European ancestry controls	NA	4q22.1	HSD17B13	rs13118664-?	NR	2E-7		1.3966479	[1.23-1.58]	Illumina [7412560] (imputed)	N
1258	chr4	88258482	88258483	rs9991501	28724990	Zillikens MC	2017-07-19	Nat Commun	Large meta-analysis of genome-wide association studies identifies five loci for lean body mass.	Lean body mass	37,450 European ancestry individuals, 842 Old Order Amish individuals	47,227 European ancestry individuals, 380 African American individuals, 8,034 Korean ancestry individuals, 7,834 Indian ancestry individuals	4q22.1	HSD17B11	rs9991501-?	0.04	6E-9	(EA)	0.39	[0.25-0.53] unit decrease	Affymetrix, Illumina [at least 1912063] (imputed)	N
1258	chr4	88258482	88258483	rs9991501	28724990	Zillikens MC	2017-07-19	Nat Commun	Large meta-analysis of genome-wide association studies identifies five loci for lean body mass.	Appendicular lean mass	27,488 European ancestry individuals, 842 Old Order Amish individuals	42,360 European ancestry individuals, 380 African American individuals, 2,350 Korean ancestry individuals	4q22.1	HSD17B11	rs9991501-?	0.04	1E-7	(EA)	0.19	[0.11-0.27] unit decrease	Affymetrix, Illumina [at least 1912063] (imputed)	N
1258	chr4	88266288	88266289	rs7671900	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	4q22.1	ENSG00000255723	rs7671900-A	NR	4E-8		0.017060502	[0.011-0.023] unit increase	Affymetrix [NR]	N
1258	chr4	88274572	88274573	rs4422389	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	4q22.1	NR	rs4422389-C	NR	4E-10		0.0204	[0.014-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
1258	chr4	88287362	88287363	rs58073039	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	4q22.1	NR	rs58073039-G	0.298368	2E-11		0.014119	[0.01-0.0183] unit decrease	Affymetrix [16668957] (imputed)	N
1258	chr4	88287992	88287993	rs11732896	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	417,580 European ancestry individuals	NA	4q22.1		rs11732896-G	0.701209	4E-13		0.016	[0.012-0.02] unit decrease	NR [7250403] (imputed)	N
1258	chr4	88300527	88300528	rs112399155	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric bone mineral content (radius)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	4q22.1	NR	rs112399155-T	0.161	4E-6		0.218852	[0.13-0.31] unit increase	Illumina [~ 6600000] (imputed)	N
1258	chr4	88310134	88310135	rs28696943	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	4q22.1	NUDT9	rs28696943-G	0.167	2E-28	(ADP-ribose pyrophosphatase, mitochondrial, NUDT9.9482.110.3)	0.36	[0.3-0.42] unit decrease	Affymetrix [10572788] (imputed)	N
1258	chr4	88342368	88342369	rs11945232	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	4q22.1	NUDT9	rs11945232-A	NR	2E-8		0.016943239	[0.011-0.023] unit decrease	Affymetrix [NR]	N
1259	chr4	88351603	88351604	rs10030035	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q22.1	NUDT9	rs10030035-T	0.834375	2E-22	(NUDT9, 9482_110_3)	0.3207073	[0.26-0.38] unit increase	Illumina [> 1000000] (imputed)	N
1259	chr4	88357841	88357842	rs9998212	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NUDT9	5,367 Icelandic ancestry individuals	NA	4q22.1		rs9998212-C	0.1684	1E-42		0.338249	[0.29-0.39] unit decrease	Illumina [7506463] (imputed)	N
1259	chr4	88400109	88400110	rs4610302	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	4q22.1	NR	rs4610302-G	NR	4E-13		0.0177	[0.013-0.022] unit increase	Affymetrix [9000000] (imputed)	N
1259	chr4	88400109	88400110	rs4610302	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	4q22.1	NR	rs4610302-G	NR	8E-11		0.0167	[0.012-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
1259	chr4	88400109	88400110	rs4610302	24121790	Levine DM	2013-10-13	Nat Genet	A genome-wide association study identifies new susceptibility loci for esophageal adenocarcinoma and Barrett's esophagus.	Esophageal adenocarcinoma	1,516 European ancestry cases, 3,209 European ancestry controls	874 European ancestry cases, 6,911 European ancestry controls	4q22.1	NR	rs4610302-G	0.59	4E-6		1.1765	[1.1-1.27]	Illumina [922031]	N
1259	chr4	88416370	88416371	rs17012705	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Number of common colds	43,826 European ancestry cases, 15,720 European ancestry controls	NA	4q22.1	NR	rs17012705-?	NR	6E-6		0.0758	[0.043-0.109] unit increase	Illumina [at least 560000] (imputed)	N
1259	chr4	88423912	88423913	rs4693167	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	4q22.1	SPARCL1	rs4693167-C	0.3660983	3E-53	(SPARC-like protein 1)	0.68	[0.6-0.76] unit increase	Affymetrix [509946]	N
1259	chr4	88445657	88445658	rs4693833	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SPARCL1	5,366 Icelandic ancestry individuals	NA	4q22.1		rs4693833-G	0.2589	7E-129		0.488812	[0.45-0.53] unit increase	Illumina [7506463] (imputed)	N
1259	chr4	88446314	88446314	rs571639369	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	4q22.1	NR	rs571639369-CA	0.179	6E-77	(SPARC-like protein 1, SPARCL1.4467.49.2)	0.61	[0.55-0.67] unit increase	Affymetrix [10572788] (imputed)	N
1259	chr4	88447302	88447303	rs6820415	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SPARCL1	5,350 Icelandic ancestry individuals	NA	4q22.1		rs6820415-A	0.2092	3E-24		0.22443	[0.18-0.27] unit increase	Illumina [7506463] (imputed)	N
1259	chr4	88447302	88447303	rs6820415	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q22.1	SPARCL1	rs6820415-G	0.78765625	9E-15	(SPARCL1, 13707_27_3)	0.23197041	[0.17-0.29] unit decrease	Illumina [> 1000000] (imputed)	N
1259	chr4	88462728	88462729	rs7681694	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SPARCL1	5,366 Icelandic ancestry individuals	NA	4q22.1		rs7681694-A	0.3753	5E-143		0.462918	[0.43-0.5] unit increase	Illumina [7506463] (imputed)	N
1259	chr4	88462728	88462729	rs7681694	32492067	Ruffieux H	2020-06-03	PLoS Comput Biol	A fully joint Bayesian quantitative trait locus mapping of human protein abundance in plasma.	Protein quantitative trait loci	394 European ancestry individuals	548 European ancestry individuals	4q22.1	NR	rs7681694-?	NR	8E-14	(SPARCL1)			Illumina [~ 4000000] (imputed)	N
1259	chr4	88462728	88462729	rs7681694	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q22.1	SPARCL1	rs7681694-A	0.3709375	1E-78	(SPARCL1, 4467_49_2)	0.46109593	[0.41-0.51] unit increase	Illumina [> 1000000] (imputed)	N
1259	chr4	88462728	88462729	rs7681694	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	4q22.1	SPARCL1	rs7681694-A	0.337	3E-105	(SPARC-like protein 1, SPARCL1.4467.49.2)	0.53	[0.49-0.57] unit increase	Affymetrix [10572788] (imputed)	N
1259	chr4	88468157	88468158	rs116183010	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	4q22.1	NR	rs116183010-A	NR	6E-21		0.0727	[0.058-0.088] unit increase	Affymetrix [9000000] (imputed)	N
1259	chr4	88468157	88468158	rs116183010	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	4q22.1	SPARCL1	rs116183010-A	0.024	4E-12		0.0958	[0.069-0.123] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1260	chr4	88478749	88478750	rs1462372	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	4q22.1	Intergenic	rs1462372-C	0.3274824	6E-12	(SPARC-like protein 1)	0.3214	[0.23-0.41] unit increase	Affymetrix [509946]	N
1260	chr4	88523576	88523577	rs72654150	29495422	Xu H	2018-02-26	J Pers Med	A Genome-Wide Association Study of Idiopathic Dilated Cardiomyopathy in African Americans.	Idiopathic dilated cardiomyopathy	662 African American cases, 1,138 African American controls	NA	4q22.1	SPARCL1, DSPP	rs72654150-T	0.048	3E-6		1.03	[1.05-40.45]	Affymetrix [up to 27494467] (imputed)	N
1260	chr4	88524745	88524746	rs72654152	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	4q22.1	NR	rs72654152-G	NR	8E-10		0.0178	[0.012-0.023] unit increase	Affymetrix [9000000] (imputed)	N
1260	chr4	88534234	88534235	rs2736982	31991592	Coltell O	2020-01-24	Nutrients	Genome-Wide Association Study for Serum Omega-3 and Omega-6 Polyunsaturated Fatty Acids: Exploratory Analysis of the Sex-Specific Effects and Dietary Modulation in Mediterranean Subjects with Metabolic Syndrome.	Serum omega-6 to omega-3 polyunsaturated fatty acid ratio in metabolic syndrome	426 Mediterranean individuals	NA	4q22.1	DSPP	rs2736982-?	0.326	4E-6	(adjusted for age, sex & diabetes)	0.024	NR unit decrease	Illumina [621723]	N
1260	chr4	88534234	88534235	rs2736982	31991592	Coltell O	2020-01-24	Nutrients	Genome-Wide Association Study for Serum Omega-3 and Omega-6 Polyunsaturated Fatty Acids: Exploratory Analysis of the Sex-Specific Effects and Dietary Modulation in Mediterranean Subjects with Metabolic Syndrome.	Serum omega-3 polyunsaturated fatty acid concentration in metabolic syndrome	426 Mediterranean individuals	NA	4q22.1	DSPP	rs2736982-?	0.326	2E-6	(adjusted for age, sex and diabetes)	0.22	unit increase	Illumina [621723]	N
1260	chr4	88534234	88534235	rs2736982	31991592	Coltell O	2020-01-24	Nutrients	Genome-Wide Association Study for Serum Omega-3 and Omega-6 Polyunsaturated Fatty Acids: Exploratory Analysis of the Sex-Specific Effects and Dietary Modulation in Mediterranean Subjects with Metabolic Syndrome.	Serum docosahexaenoic fatty acid concentration in metabolic syndrome	426 Mediterranean individuals	NA	4q22.1	DSPP	rs2736982-A	0.326	3E-6		0.079	[0.046-0.112] unit increase	Illumina [621723]	N
1260	chr4	88555610	88555610	rs10649357	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	4q22.1		rs10649357-CAAT	NR	1E-8		0.0097	[0.0064-0.013] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1260	chr4	88557752	88557753	rs1841738	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	4q22.1	AC093895.1	rs1841738-A	0.4817	1E-24		0.0195	[0.016-0.023] unit increase	Affymetrix [18391927] (imputed)	N
1260	chr4	88591553	88591554	rs114791459	33832965	Sandoval-Plata G	2021-04-08	Ann Rheum Dis	Variants in urate transporters, ADH1B, GCKR and MEPE genes associate with transition from asymptomatic hyperuricaemia to gout: results of the first gout versus asymptomatic hyperuricaemia GWAS in Caucasians using data from the UK Biobank.	Gout vs asymptomatic hyperuricemia	4,934 European ancestry cases, 56,948 European ancestry controls	2,115 European ancestry cases, 24,406 European ancestry controls	4q22.1	LOC105377323	rs114791459-A	0.02	2E-12		1.43	[1.30-1.59]	Affymetrix [710030]	N
1260	chr4	88591553	88591554	rs114791459	33832965	Sandoval-Plata G	2021-04-08	Ann Rheum Dis	Variants in urate transporters, ADH1B, GCKR and MEPE genes associate with transition from asymptomatic hyperuricaemia to gout: results of the first gout versus asymptomatic hyperuricaemia GWAS in Caucasians using data from the UK Biobank.	Gout	7,049 European ancestry cases, 64,424 European ancestry controls	NA	4q22.1	LOC105377323	rs114791459-A	0.02	5E-26		1.86	[1.66-2.09]	Affymetrix [710030]	N
1260	chr4	88591553	88591554	rs114791459	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	4q22.1	NR	rs114791459-A	NR	3E-47		0.1241	[0.11-0.14] unit increase	Affymetrix [9000000] (imputed)	N
1261	chr4	88606760	88606761	rs11727162	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	4q22.1	RP11-742B18.1	rs11727162-C	NR	1E-10		0.01817	[0.013-0.024] unit increase	Affymetrix [321016] (imputed)	N
1261	chr4	88611113	88611113	rs35417399	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	4q22.1		rs35417399-?	NR	3E-29		0.0228395	[0.019-0.027] unit decrease	Affymetrix [20259828] (imputed)	N
1261	chr4	88611113	88611113	rs35417399	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	4q22.1	DMP1	rs35417399-C	0.629392	9E-6	(men)	0.0266027	[0.015-0.038] unit decrease	NR [17166351] (imputed)	N
1261	chr4	88611113	88611113	rs35417399	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	4q22.1	DMP1	rs35417399-C	0.628928	8E-14		0.0281304	[0.021-0.035] unit decrease	NR [17166351] (imputed)	N
1261	chr4	88611113	88611113	rs35417399	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	4q22.1	DMP1	rs35417399-C	0.628523	8E-10	(women)	0.0304391	[0.02-0.04] unit decrease	NR [17166351] (imputed)	N
1261	chr4	88611343	88611344	rs11097166	33762635	Martinez-Magana JJ	2021-03-24	Sci Rep	Genome-wide association study of psychiatric and substance use comorbidity in Mexican individuals.	Psychiatric symptomatology	658 Mexican ancestry cases, 1,487 Mexican ancestry controls	NA	4q22.1		rs11097166-G	0.4074	3E-6		1.41	[1.22-1.62]	Illumina [248101]	N
1261	chr4	88642777	88642778	rs11722021	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	4q22.1		rs11722021-?	NR	3E-31				NR [~ 8900000] (imputed)	N
1261	chr4	88645343	88645344	rs4395467	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	4q22.1	DMP1	rs4395467-C	0.48281	7E-33		0.0221743	[0.019-0.026] unit decrease	NR [13737936] (imputed)	N
1261	chr4	88645797	88645798	rs4287972	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	4q22.1		rs4287972-?	NR	5E-40				NR [~ 8900000] (imputed)	N
1261	chr4	88645797	88645798	rs4287972	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	4q22.1		rs4287972-?	NR	5E-30		0.0230613	[0.019-0.027] unit decrease	Affymetrix [20259828] (imputed)	N
1261	chr4	88671937	88671938	rs11733008	25145502	Tang S	2014-08-22	Ann Surg Oncol	Genome-wide association study of survival in early-stage non-small cell lung cancer.	Non-small cell lung cancer (survival)	354 Han Chinese ancestry cases	327 Han Chinese ancestry cases	4q22.1	NR	rs11733008-?	NR	3E-6		1.76	[1.39-2.23]	Affymetrix [589102]	N
1261	chr4	88679137	88679138	rs72655751	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	4q22.1	snoU13	rs72655751-C	NR	1E-8		0.0200041	[0.013-0.027] unit increase	Affymetrix [321016] (imputed)	N
1261	chr4	88698344	88698345	rs2100889	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	4q22.1	NR	rs2100889-T	NR	2E-11		0.0183	[0.013-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
1261	chr4	88707080	88707081	rs13136331	25865494	Chan Y	2015-04-09	Am J Hum Genet	Genome-wide Analysis of Body Proportion Classifies Height-Associated Variants by Mechanism of Action and Implicates Genes Important for Skeletal Development.	Sitting height ratio	3,545 African American individuals, 12,965 European ancestry women, 8,625 European ancestry men	NA	4q22.1	NR	rs13136331-T	0.32	5E-6	(EA)	0.048	[0.028-0.068] unit increase	Affymetrix, Illumina [up to 10250422] (imputed)	N
1261	chr4	88711265	88711266	rs11097170	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	4q22.1	NR	rs11097170-T	0.519748	9E-10		0.0430616	[0.03-0.056] unit increase	Affymetrix [17914406] (imputed)	N
1261	chr4	88732691	88732692	rs1054627	21533022	Duncan EL	2011-04-21	PLoS Genet	Genome-wide association study using extreme truncate selection identifies novel genes affecting bone mineral density and fracture risk.	Bone mineral density	900 European ancestry female individuals with low hip bone mineral density, 1,055 European ancestry female individuals with high hip bone mineral density	20,898 European ancestry female individuals	4q22.1	IBSP	rs1054627-G	NR	8E-7	(femoral neck)	0.05	[NR] unit decrease	Illumina [2543887] (imputed)	N
1262	chr4	88754059	88754060	rs17013212	33097703	Surakka I	2020-10-23	Nat Commun	MEPE loss-of-function variant associates with decreased bone mineral density and increased fracture risk.	Ultradistal forearm bone mineral density	21,907 European ancestry individuals	NA	4q22.1	NR	rs17013212-?	0.861095324158669	3E-8		0.08512997	[0.055-0.115] SD units increase	Illumina [11603265] (imputed)	N
1262	chr4	88754059	88754060	rs17013212	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	4q22.1	MEPE	rs17013212-C	0.86065	4E-21		0.0257216	[0.02-0.031] unit increase	NR [13737936] (imputed)	N
1262	chr4	88754059	88754060	rs17013212	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	4q22.1		rs17013212-?	NR	8E-43		0.0402501	[0.034-0.046] unit increase	Affymetrix [20259828] (imputed)	N
1262	chr4	88755827	88755828	rs7698623	21779381	Schurks M	2011-07-14	PLoS One	Genetic determinants of cardiovascular events among women with migraine: a genome-wide association study.	Cardiovascular disease risk factors	5,122 European ancestry female migrain cases	NA	4q22.1	MEPE	rs7698623-?	NR	3E-7	(migraineurs with aura - ischemic stroke)	6.37	[3.15-12.90]	Illumina [339596]	N
1262	chr4	88772405	88772407	rs33983260	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Osteoporosis	8,520 European ancestry cases, 479,981 European ancestry controls, 9,794 East Asian ancestry cases, 168,932 East Asian ancestry controls	NA	4q22.1		rs33983260-C	NR	7E-12		0.0844	[0.06-0.109] unit increase	Affymetrix, Illumina [25844994] (imputed)	N
1262	chr4	88772534	88772535	rs10023907	32981348	Klarin D	2020-09-28	Circulation	Genetic Architecture of Abdominal Aortic Aneurysm in the Million Veteran Program.	Abdominal aortic aneurysm	7,642 European ancestry cases, 172,172 European ancestry controls	4,972 European ancestry cases, 99,858 European ancestry controls	4q22.1	MEPE	rs10023907-T	0.6659	2E-8		1.09	1.06-1.12	Affymetrix [18689289] (imputed)	N
1262	chr4	88773848	88773849	rs6532023	24945404	Kemp JP	2014-06-19	PLoS Genet	Phenotypic dissection of bone mineral density reveals skeletal site specificity and facilitates the identification of novel loci in the genetic regulation of bone mass attainment.	Bone mineral density (paediatric, total body less head)	8,007 European ancestry children, 289 Surinamese ancestry children, 300 Turkish ancestry children, 232 Moroccan ancestry children, 588 children	NA	4q22.1	MEPE	rs6532023-T	0.34	3E-6		0.07	[NR] unit increase	Illumina [~ 2500000] (imputed)	N
1262	chr4	88773848	88773849	rs6532023	22504420	Estrada K	2012-04-15	Nat Genet	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Lumbar spine bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	4q22.1	MEPE	rs6532023-T	0.34	1E-27		0.06	[NR] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1262	chr4	88774497	88774498	rs72655796	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	4q22.1		rs72655796-?	NR	1E-63		0.0352166	[0.031-0.04] unit increase	Affymetrix [20259828] (imputed)	N
1262	chr4	88774497	88774498	rs72655796	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	4q22.1	MEPE	rs72655796-A	0.368099	3E-11	(women)	0.0312717	[0.022-0.041] unit increase	NR [17166351] (imputed)	N
1262	chr4	88774497	88774498	rs72655796	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	4q22.1	MEPE	rs72655796-A	0.367535	3E-17		0.0298783	[0.023-0.037] unit increase	NR [17166351] (imputed)	N
1262	chr4	88774497	88774498	rs72655796	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	4q22.1	MEPE	rs72655796-A	0.366888	4E-6	(men)	0.0251853	[0.015-0.036] unit increase	NR [17166351] (imputed)	N
1262	chr4	88775159	88775160	rs899040	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs affecting bone structure and mineralization)	7,870 European ancestry cases, 207,798 European ancestry controls, 6,143 East Asian ancestry cases, 172,583 East Asian ancestry controls	NA	4q22.1		rs899040-A	NR	1E-8		0.075	[0.049-0.101] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1262	chr4	88775159	88775160	rs899040	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (drugs affecting bone structure and mineralization)	7,870 European ancestry cases, 207,798 European ancestry controls	NA	4q22.1	MEPE	rs899040-T	0.338096	1E-8		0.09635005	[0.063-0.129] unit decrease	Affymetrix [7288503] (imputed)	N
1262	chr4	88775194	88775195	rs899041	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	4q22.1		rs899041-?	NR	3E-14				NR [~ 8900000] (imputed)	N
1262	chr4	88775242	88775243	rs1471403	19801982	Rivadeneira F	2009-10-04	Nat Genet	Twenty bone-mineral-density loci identified by large-scale meta-analysis of genome-wide association studies.	Bone mineral density (spine)	19,195 European ancestry individuals	NA	4q22.1	MEPE	rs1471403-T	0.34	2E-8		0.07	[0.05-0.09] s.d. increase	Affymetrix, Illumina [2543686] (imputed)	N
1262	chr4	88775242	88775243	rs1471403	19801982	Rivadeneira F	2009-10-04	Nat Genet	Twenty bone-mineral-density loci identified by large-scale meta-analysis of genome-wide association studies.	Bone mineral density (hip)	19,195 European ancestry individuals	NA	4q22.1	MEPE	rs1471403-T	0.34	8E-7		0.06	[0.04-0.08] s.d. increase	Affymetrix, Illumina [2543686] (imputed)	N
1262	chr4	88790117	88790118	rs114580333	33832965	Sandoval-Plata G	2021-04-08	Ann Rheum Dis	Variants in urate transporters, ADH1B, GCKR and MEPE genes associate with transition from asymptomatic hyperuricaemia to gout: results of the first gout versus asymptomatic hyperuricaemia GWAS in Caucasians using data from the UK Biobank.	Gout vs asymptomatic hyperuricemia	4,934 European ancestry cases, 56,948 European ancestry controls	2,115 European ancestry cases, 24,406 European ancestry controls	4q22.1	MEPE	rs114580333-A	0.02	1E-10		1.42	[1.28-1.59]	Affymetrix [710030]	N
1262	chr4	88790117	88790118	rs114580333	33832965	Sandoval-Plata G	2021-04-08	Ann Rheum Dis	Variants in urate transporters, ADH1B, GCKR and MEPE genes associate with transition from asymptomatic hyperuricaemia to gout: results of the first gout versus asymptomatic hyperuricaemia GWAS in Caucasians using data from the UK Biobank.	Gout	7,049 European ancestry cases, 64,424 European ancestry controls	NA	4q22.1	MEPE	rs114580333-A	0.02	1E-21		1.83	[1.62-2.07]	Affymetrix [710030]	N
1262	chr4	88790117	88790118	rs114580333	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	4q22.1	NR	rs114580333-A	NR	1E-43		0.125	[0.11-0.14] unit increase	Affymetrix [9000000] (imputed)	N
1262	chr4	88794877	88794878	rs1463103	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	4q22.1		rs1463103-?	NR	1E-51		0.0428281	[0.037-0.049] unit increase	Affymetrix [20259828] (imputed)	N
1262	chr4	88798283	88798284	rs7672749	28743860	Medina-Gomez C	2017-07-25	Nat Commun	Bivariate genome-wide association meta-analysis of pediatric musculoskeletal traits reveals pleiotropic effects at the SREBF1/TOM1L2 locus.	TB-LM or TBLH-BMD (pleiotropy)	8,327 European ancestry individuals, 2,087 individuals	NA	4q22.1	Intergenic	rs7672749-A	0.09	3E-8				Illumina [2276811] (imputed)	N
1262	chr4	88799709	88799710	rs1463104	24249740	Zhang L	2013-11-17	Hum Mol Genet	Multistage genome-wide association meta-analyses identified two new loci for bone mineral density.	Bone mineral density	5,833 European ancestry females, 2,639 European ancestry males, 784 Han Chinese ancestry females, 763 Han Chinese ancestry males, 712 African American females, 409 Hispanic females	7,010 European ancestry females, 3,772 European ancestry males, 2,980 East Asian ancestry females, 2,159 East Asian ancestry males	4q22.1	MEPE	rs1463104-?	NR	2E-9	(spine)			Affymetrix, Illumina [5842825] (imputed)	N
1262	chr4	88803754	88803755	rs181832503	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	4q22.1	MEPE	rs181832503-A	0.999329	1E-18		0.283801	[0.22-0.35] unit increase	NR [13737936] (imputed)	N
1262	chr4	88805207	88805208	rs12644436	22174851	Lingappa JR	2011-12-12	PLoS One	Genomewide association study for determinants of HIV-1 acquisition and viral set point in HIV-1 serodiscordant couples with quantified virus exposure.	HIV-1 viral setpoint	496 African ancestry cases	NA	4q22.1	HSP90AB3P	rs12644436-?	NR	6E-6				Illumina [990115]	N
1262	chr4	88809138	88809139	rs781142826	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	4q22.1	MEPE	rs781142826-T	0.999169	1E-38		0.387368	[0.33-0.45] unit increase	NR [13737936] (imputed)	N
1262	chr4	88822745	88822746	rs181831514	33097703	Surakka I	2020-10-23	Nat Commun	MEPE loss-of-function variant associates with decreased bone mineral density and increased fracture risk.	Ultradistal forearm bone mineral density	21,907 European ancestry individuals	NA	4q22.1	NR	rs181831514-T	0.008	2E-18		0.533	[0.41-0.65] SD units decrease	Illumina [11603265] (imputed)	N
1262	chr4	88830631	88830632	rs10013836	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	4q22.1	NR	rs10013836-C	NR	5E-27		0.0256	[0.021-0.03] unit decrease	Affymetrix [9000000] (imputed)	N
1262	chr4	88831248	88831249	rs11934731	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	4q22.1	MEPE	rs11934731-G	0.31931	2E-60		0.0331137	[0.029-0.037] unit increase	NR [13737936] (imputed)	N
1262	chr4	88831248	88831249	rs11934731	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	4q22.1		rs11934731-?	NR	3E-75				NR [~ 8900000] (imputed)	N
1262	chr4	88831248	88831249	rs11934731	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	4q22.1		rs11934731-?	NR	2E-70		0.0379469	[0.034-0.042] unit increase	Affymetrix [20259828] (imputed)	N
1262	chr4	88831248	88831249	rs11934731	29499414	Pei YF	2018-02-27	Bone	Joint study of two genome-wide association meta-analyses identified 20p12.1 and 20q13.33 for bone mineral density.	Lumbar spine bone mineral density	up to 4,692 European ancestry individuals, up to 1,539 Han Chinese ancestry individuals, up to 849 African American individuals, up to 446 Hispanic individuals, 2,882 European ancestry whole-genome sequenced individuals, 3,549 European ancestry whole-exome sequenced individuals, 26,534 European ancestry non-array genotype imputed individuals	NA	4q22.1	HSP90AB3P	rs11934731-A	0.484937	7E-11		0.0536	[0.038-0.07] unit decrease	Affymetrix, Illumina [7998108] (imputed)	N
1262	chr4	88831248	88831249	rs11934731	29499414	Pei YF	2018-02-27	Bone	Joint study of two genome-wide association meta-analyses identified 20p12.1 and 20q13.33 for bone mineral density.	Femoral neck bone mineral density	up to 4,692 European ancestry individuals, up to 1,539 Han Chinese ancestry individuals, up to 849 African American individuals, up to 446 Hispanic individuals, 2,882 European ancestry whole-genome sequenced individuals, 3,549 European ancestry whole-exome sequenced individuals, 26,534 European ancestry non-array genotype imputed individuals	NA	4q22.1	HSP90AB3P	rs11934731-A	0.484937	2E-7		0.0379	[0.024-0.052] unit decrease	Affymetrix, Illumina [7998108] (imputed)	N
1262	chr4	88831248	88831249	rs11934731	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density (age 45-60)	18,805 European individuals	NA	4q22.1	NR	rs11934731-A	0.6784	4E-10		0.0718	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
1262	chr4	88831248	88831249	rs11934731	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density (age 0-15)	11,807 European and unknown ancestry individuals	NA	4q22.1	NR	rs11934731-A	0.6716	2E-8		0.0777	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
1262	chr4	88831248	88831249	rs11934731	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	4q22.1	NR	rs11934731-A	0.6774	2E-20	(European)	0.0616	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
1262	chr4	88831248	88831249	rs11934731	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	4q22.1	NR	rs11934731-A	0.6738	8E-29		0.0674	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
1262	chr4	88832798	88832799	rs1381949	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q22.1	SPP1	rs1381949-G	0.49109375	1E-7	(SPP1, 13113_7_3)	0.1312277	[0.083-0.18] unit increase	Illumina [> 1000000] (imputed)	N
1262	chr4	88846765	88846766	rs59878318	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	4q22.1		rs59878318-?	NR	5E-40		0.0302616	[0.026-0.035] unit increase	Affymetrix [20259828] (imputed)	N
1262	chr4	88852642	88852643	rs10005067	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density (age 30-45)	10,062 European and unknown ancestry individuals	NA	4q22.1	NR	rs10005067-T	0.5212	2E-9		0.0883	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
1263	chr4	88872919	88872920	rs188917216	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	4q22.1	SPP1	rs188917216-A	0.9883	6E-10		0.14329	[0.098-0.189] mg/dL decrease	Affymetrix, Illumina [8217339] (imputed)	N
1263	chr4	88878761	88878762	rs7660383	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	4q22.1	NR	rs7660383-T	NR	8E-10		0.0392	[0.027-0.052] unit decrease	Affymetrix [9000000] (imputed)	N
1263	chr4	88895114	88895115	rs2728127	33832965	Sandoval-Plata G	2021-04-08	Ann Rheum Dis	Variants in urate transporters, ADH1B, GCKR and MEPE genes associate with transition from asymptomatic hyperuricaemia to gout: results of the first gout versus asymptomatic hyperuricaemia GWAS in Caucasians using data from the UK Biobank.	Gout	7,049 European ancestry cases, 64,424 European ancestry controls	NA	4q22.1	SPP1	rs2728127-G	0.29	3E-17		0.83	[0.80-0.87]	Affymetrix [710030]	N
1263	chr4	88915779	88915780	rs72871581	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	4q22.1	NR	rs72871581-A	NR	7E-14		0.0385	[0.029-0.048] unit decrease	Affymetrix [9000000] (imputed)	N
1263	chr4	88919105	88919106	rs2725236	21490707	Cornelis MC	2011-04-07	PLoS Genet	Genome-wide meta-analysis identifies regions on 7p21 (AHR) and 15q24 (CYP1A2) as determinants of habitual caffeine consumption.	Caffeine consumption	47,431 European ancestry individuals	NA	4q22.1	intergenic	rs2725236-A	0.48	5E-6		0.065	[0.04-0.10] mg/day decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1263	chr4	88920984	88920985	rs114796149	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Leucine levels	115,078 European ancestry individuals	NA	4q22.1		rs114796149-G	0.982494	2E-12		0.109411	[0.079-0.14] unit decrease	NR [11722792] (imputed)	N
1263	chr4	88932271	88932272	rs2725234	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	4q22.1	NR	rs2725234-T	0.1	1E-300		0.116	[0.11-0.12] unit increase	NR [NR]	N
1263	chr4	88959921	88959922	rs2725220	22797727	Okada Y	2012-07-15	Nat Genet	Meta-analysis identifies multiple loci associated with kidney function-related traits in east Asian populations.	Renal function-related traits (urea)	21,417 East Asian ancestry individuals	11,657 East Asian ancestry individuals	4q22.1	ABCG2	rs2725220-C	0.32	4E-30		0.135	[0.11-0.16] mg/dl increase	Affymetrix, Illumina [2278301] (imputed)	N
1263	chr4	88968342	88968343	rs10031265	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	4q22.1		rs10031265-G	NR	1E-8		0.0164	[0.011-0.022] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
1263	chr4	88968487	88968488	rs2728107	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	4q22.1	NR	rs2728107-?	NR	9E-9	(Brain stem)			NR [9227495] (imputed)	N
1263	chr4	88970374	88970375	rs2725211	30899057	Lee MG	2019-03-21	Sci Rep	Integrative Genome-Wide Association Studies of eQTL and GWAS Data for Gout Disease Susceptibility.	Gout	373 Han Chinese ancestry cases, 6,721 Han Chinese ancestry controls	385 Han Chinese ancestry cases, 7,445 Han Chinese ancestry controls	4q22.1	ABCG2, PKD2	rs2725211-T	0.24	7E-17		1.63	[NR]	Affymetrix [607675]	N
1263	chr4	88972050	88972051	rs2728106	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	4q22.1		rs2728106-A	NR	1E-8		0.0145	[0.0096-0.0194] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
1263	chr4	88973005	88973006	rs2728104	27899376	Nakayama A	2016-11-29	Ann Rheum Dis	GWAS of clinically defined gout and subtypes identifies multiple susceptibility loci that include urate transporter genes.	Renal overload gout	560 Japanese ancestry cases, 1,213 Japanese ancestry controls	618 Japanese ancestry cases, 1,268 Japanese ancestry controls	4q22.1	ABCG2	rs2728104-C	0.346	5E-33		1.84	[1.66-2.03]	Illumina [570442]	N
1263	chr4	88973638	88973639	rs2728102	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	4q22.1	PKD2	rs2728102-T	0.86	4E-9		5.88	z-score increase	Affymetrix [4311822] (imputed)	N
1263	chr4	88975737	88975738	rs2728099	28776340	Son CN	2017-09-01	J Korean Med Sci	ABCG2 Polymorphism Is Associated with Hyperuricemia in a Study of a Community-Based Korean Cohort.	Hyperuricemia	234 Korean ancestry cases, 3,413 Korean ancestry controls	NA	4q22.1	PKD2	rs2728099-G	0.2276	6E-8		1.864		Illumina [748585]	N
1263	chr4	88979528	88979529	rs2725207	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	4q22.1	NR	rs2725207-A	0.1439	6E-7	(EA)	0.0455	[0.028-0.063] unit decrease	Illumina [~ 11800000] (imputed)	N
1263	chr4	88981593	88981593	rs139497546	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	4q22.1	NR	rs139497546-?	NR	4E-8	(Brain stem)			NR [9227495] (imputed)	N
1264	chr4	89001892	89001893	rs2728125	31289104	Kawamura Y	2019-07-08	Ann Rheum Dis	Genome-wide association study revealed novel loci which aggravate asymptomatic hyperuricaemia into gout.	Gout vs. Hyperuricemia	945 Japanese ancestry cases, 1,003 Japanese ancestry controls	1,915 Japanese ancestry cases, 2,146 Japanese ancestry controls	4q22.1	ABCG2	rs2728125-G	0.313	7E-20		1.49	[1.37-1.63]	Illumina [569200]	N
1264	chr4	89001892	89001893	rs2728125	25646370	Matsuo H	2015-02-02	Ann Rheum Dis	Genome-wide association study of clinically defined gout identifies multiple risk loci and its association with clinical subtypes.	Gout	945 Japanese ancestry cases, 1,213 Japanese ancestry controls	1,048 Japanese ancestry cases, 1,334 Japanese ancestry controls	4q22.1	ABCG2	rs2728125-C	0.24	7E-54		2.04	[1.86-2.23]	Illumina [570442]	N
1264	chr4	89006159	89006160	rs2728124	25865494	Chan Y	2015-04-09	Am J Hum Genet	Genome-wide Analysis of Body Proportion Classifies Height-Associated Variants by Mechanism of Action and Implicates Genes Important for Skeletal Development.	Sitting height ratio	3,545 African American individuals, 12,965 European ancestry women, 8,625 European ancestry men	NA	4q22.1	NR	rs2728124-A	0.463	8E-6	(EA)	0.044	[0.024-0.064] unit decrease	Affymetrix, Illumina [up to 10250422] (imputed)	N
1264	chr4	89013495	89013496	rs34783571	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Urate levels	437,354 European ancestry individuals	NA	4q22.1		rs34783571-?	NR	9E-24		0.130793	[0.1-0.16] unit increase	NR [9800000] (imputed)	N
1264	chr4	89013495	89013496	rs34783571	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	4q22.1	NR	rs34783571-T	NR	2E-15		0.1337	[0.1-0.17] unit increase	Affymetrix [9000000] (imputed)	N
1264	chr4	89015727	89015728	rs199897813	29124443	Yasukochi Y	2017-11-09	Mol Genet Genomics	Identification of CDC42BPG as a novel susceptibility locus for hyperuricemia in a Japanese population.	Serum uric acid levels	5,847 Japanese ancestry individuals	NA	4q22.1	ABCG2	rs199897813-?	9.97606E-5	2E-16				Illumina [~ 244000]	N
1264	chr4	89015727	89015728	rs199897813	29124443	Yasukochi Y	2017-11-09	Mol Genet Genomics	Identification of CDC42BPG as a novel susceptibility locus for hyperuricemia in a Japanese population.	Hyperuricemia	847 Japanese ancestry cases, 4,640 Japanese ancestry controls	972 Japanese ancestry cases, 4,584 Japanese ancestry controls	4q22.1	ABCG2	rs199897813-?	9.97606E-5	2E-12				Illumina [~ 244000]	N
1264	chr4	89018669	89018670	rs45605536	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Urate levels	437,354 European ancestry individuals	NA	4q22.1		rs45605536-?	NR	4E-16		0.184992	[0.14-0.23] unit increase	NR [9800000] (imputed)	N
1264	chr4	89019614	89019615	rs45592144	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	4q22.1	NR	rs45592144-T	NR	3E-44		0.0354	[0.03-0.04] unit decrease	Affymetrix [9000000] (imputed)	N
1264	chr4	89020933	89020934	rs4148157	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	4q22.1	NR	rs4148157-A	NR	4E-377		0.167	[0.16-0.17] unit increase	Affymetrix [9000000] (imputed)	N
1264	chr4	89020933	89020934	rs4148157	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	4q22.1	NR	rs4148157-A	NR	2E-11		0.0275	[0.019-0.036] unit increase	Affymetrix [9000000] (imputed)	N
1264	chr4	89028774	89028775	rs2054576	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	4q22.1	ABCG2	rs2054576-A	0.7374	2E-122	(East Asian)	0.1531	[0.14-0.17] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1264	chr4	89028774	89028775	rs2054576	28776340	Son CN	2017-09-01	J Korean Med Sci	ABCG2 Polymorphism Is Associated with Hyperuricemia in a Study of a Community-Based Korean Cohort.	Hyperuricemia	234 Korean ancestry cases, 3,413 Korean ancestry controls	NA	4q22.1	ABCG2	rs2054576-G	0.227	5E-8		1.883	[NR]	Illumina [748585]	N
1264	chr4	89033526	89033527	rs13120400	33832965	Sandoval-Plata G	2021-04-08	Ann Rheum Dis	Variants in urate transporters, ADH1B, GCKR and MEPE genes associate with transition from asymptomatic hyperuricaemia to gout: results of the first gout versus asymptomatic hyperuricaemia GWAS in Caucasians using data from the UK Biobank.	Gout vs asymptomatic hyperuricemia	4,934 European ancestry cases, 56,948 European ancestry controls	2,115 European ancestry cases, 24,406 European ancestry controls	4q22.1	ABCG2	rs13120400-C	0.28	4E-21		0.83	[0.79-0.86]	Affymetrix [710030]	N
1264	chr4	89036352	89036353	rs2725261	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Glomerular filtration rate	143,658 Japanese ancestry individuals	NA	4q22.1	ABCG2	rs2725261-?	NR	9E-9		0.02265	[0.015-0.03] unit decrease novel	Illumina [6108953] (imputed)	N
1264	chr4	89039081	89039082	rs1481012	33287642	Said MA	2020-12-08	J Am Heart Assoc	Associations of Observational and Genetically Determined Caffeine Intake With Coronary Artery Disease and Diabetes Mellitus.	Caffeine consumption from tea	395,866 European ancestry individuals	NA	4q22.1	ABCG2	rs1481012-A	0.887297	2E-13		0.026005	[0.019-0.033] unit increase	Affymetrix [19400838] (imputed)	N
1264	chr4	89039081	89039082	rs1481012	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	4q22.1	ABCG2	rs1481012-?		1E-11				NR [7428630] (imputed)	N
1264	chr4	89039081	89039082	rs1481012	31837886	Kennedy OJ	2019-12-02	Am J Kidney Dis	Coffee Consumption and Kidney Function: A Mendelian Randomization Study.	Coffee consumption (cups per day)	227,666 British ancestry individuals	NA	4q22.1	ABCG2	rs1481012-G	0.111	2E-12		0.066	NR cups per day decrease	NR [NR]	N
1264	chr4	89039081	89039082	rs1481012	31729369	Howles SA	2019-11-15	Nat Commun	Genetic variants of calcium and vitamin D metabolism in kidney stone disease.	Kidney stones	6,536 British ancestry cases, 5,587 Japanese ancestry cases, 388,508 British ancestry controls, 28,870 Japanese ancestry controls	NA	4q22.1	ABCG2	rs1481012-G	0.11	3E-8		1.11	[1.07-1.16]	Affymetrix, Illumina [~ 5000000] (imputed)	N
1264	chr4	89039081	89039082	rs1481012	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	4q22.1	ABCG2	rs1481012-A	0.8893	7E-353		0.248838	[0.24-0.26] mg/dL decrease	Affymetrix, Illumina [8217339] (imputed)	N
1264	chr4	89039081	89039082	rs1481012	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Tea consumption	336,898 European ancestry individuals	39,924 European ancestry individuals	4q22.1	ABCG2	rs1481012-A	0.888	2E-6		0.0116	[0.0069-0.0163] unit increase	Affymetrix [~ 7740000] (imputed)	N
1264	chr4	89039081	89039082	rs1481012	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter beverage consumption	85,852 European ancestry individuals	39,924 European ancestry individuals	4q22.1	ABCG2	rs1481012-A	0.8869	8E-9		0.0146	[0.0097-0.0195] unit increase	Affymetrix [~ 7740000] (imputed)	N
1264	chr4	89039081	89039082	rs1481012	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	4q22.1	NA	rs1481012-A	0.8895	5E-13		0.0188	[0.014-0.024] unit increase	NR [~ 27400000] (imputed)	N
1264	chr4	89039081	89039082	rs1481012	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in obese individuals	4,613 European ancestry male individuals, 4,690 European ancestry female individuals, 142 European ancestry individuals	NA	4q22.1	ABCG2	rs1481012-G	0.11	9E-8		0.136	[0.085-0.187] kg/m2 increase	Affymetrix, Illumina [at least 188473] (imputed)	N
1264	chr4	89039081	89039082	rs1481012	25288136	Cornelis MC	2014-10-07	Mol Psychiatry	Genome-wide meta-analysis identifies six novel loci associated with habitual coffee consumption.	Coffee consumption (cups per day)	91,462 European ancestry individuals	30,062 European ancestry individuals, 7,964 African American individuals	4q22.1	ABCG2, PKD2, PPM1K	rs1481012-A	0.89	9E-8		0.06	[0.040-0.080] unit increase	Affymetrix, Illumina [2373958] (imputed)	N
1264	chr4	89039081	89039082	rs1481012	23263486	Kottgen A	2012-12-23	Nat Genet	Genome-wide association analyses identify 18 new loci associated with serum urate concentrations.	Gout	2,115 European ancestry cases, 67,259 European ancestry controls	1,036 European ancestry cases	4q22.1	ABCG2	rs1481012-A	0.8903	2E-32		0.5484	[0.46-0.64] unit decrease	Affymetrix, Illumina [2538056] (imputed)	N
1264	chr4	89039081	89039082	rs1481012	22331829	Chasman DI	2012-02-13	Circ Cardiovasc Genet	Genetic determinants of statin-induced low-density lipoprotein cholesterol reduction: the Justification for the Use of Statins in Prevention: an Intervention Trial Evaluating Rosuvastatin (JUPITER) trial.	Response to statins (LDL cholesterol change)	6,989 European ancestry individuals	NA	4q22.1	ABCG2	rs1481012-?	NR	2E-15	(fractional LDL-C reduction)	5.1	[3.34-6.86] % decrease	Illumina [814418]	N
1264	chr4	89039499	89039500	rs2231146	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	4q22.1	NR	rs2231146-T	0.99	7E-11		0.0623	[0.043-0.081] unit increase	NR [NR]	N
1264	chr4	89039621	89039622	rs45570646	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	4q22.1	NR	rs45570646-C	NR	1E-97		0.1679	[0.15-0.18] unit increase	Affymetrix [9000000] (imputed)	N
1264	chr4	89039628	89039629	rs1871744	27899376	Nakayama A	2016-11-29	Ann Rheum Dis	GWAS of clinically defined gout and subtypes identifies multiple susceptibility loci that include urate transporter genes.	Renal underexcretion gout	619 Japanese ancestry cases, 1,213 Japanese ancestry controls	696 Japanese ancestry cases, 1,268 Japanese ancestry controls	4q22.1	ABCG2	rs1871744-T	0.724	2E-22		1.81	[1.60-2.04]	Illumina [570442]	N
1264	chr4	89043633	89043634	rs45499402	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	4q22.1		rs45499402-C	NR	3E-778		0.1462	[0.14-0.15] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
1264	chr4	89043633	89043634	rs45499402	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	4q22.1	ABCG2	rs45499402-G	0.861518	9E-13	(urate)	0.235	[0.17-0.3] unit decrease	Illumina [13039987] (imputed)	N
1264	chr4	89045330	89045331	rs2199936	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	4q22.1		rs2199936-G	NR	4E-10		0.0191	[0.013-0.025] unit increase	Affymetrix, Illumina [20529698] (imputed)	N
1264	chr4	89045330	89045331	rs2199936	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	4q22.1		rs2199936-G	NR	4E-9		0.0149	[0.01-0.02] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1264	chr4	89045330	89045331	rs2199936	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	4q22.1	NR	rs2199936-?	NR	4E-12				Affymetrix [~ 8270000] (imputed)	N
1264	chr4	89045330	89045331	rs2199936	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Coffee consumption	335,909 European ancestry individuals	39,924 European ancestry individuals	4q22.1	ABCG2	rs2199936-G	0.8866	4E-11		0.0153	[0.011-0.02] unit increase	Affymetrix [~ 7740000] (imputed)	N
1264	chr4	89045330	89045331	rs2199936	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals, at least 88,461 European ancestry individuals	NA	4q22.1	ABCG2	rs2199936-A	0.2962	1E-148	(Japanese)	0.1145	[0.11-0.12] unit increase	Illumina [1986983] (imputed)	N
1264	chr4	89045330	89045331	rs2199936	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals, at least 88,461 European ancestry individuals	NA	4q22.1	ABCG2	rs2199936-A	0.095	5E-128	(EA)	0.16428572	[0.15-0.18] unit increase	Illumina [1986983] (imputed)	N
1264	chr4	89045330	89045331	rs2199936	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in overweight individuals	up to 10,058 European ancestry male individuals, up to 7,189 European ancestry female individuals	NA	4q22.1	ABCG2	rs2199936-G	0.89	1E-22	(men)	0.243	[0.19-0.29] kg/m2 decrease	Affymetrix, Illumina [at least 188473] (imputed)	N
1264	chr4	89045330	89045331	rs2199936	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in lean individuals	up to 5,529 European ancestry male individuals, up to 9,753 European ancestry female individuals	NA	4q22.1	ABCG2	rs2199936-G	0.9	1E-22	(Men)	0.323	[0.26-0.39] kg/m2 decrease	Affymetrix, Illumina [at least 188473] (imputed)	N
1264	chr4	89045330	89045331	rs2199936	23118302	Chu AY	2012-11-01	Circ Cardiovasc Genet	Genome-wide association study evaluating lipoprotein-associated phospholipase A2 mass and activity at baseline and after rosuvastatin therapy.	Lipoprotein-associated phospholipase A2 activity change in response to statin therapy	2,673 European ancestry cases, 2,656 European ancestry controls	NA	4q22.1	ABCG2	rs2199936-A	0.11	2E-10	(percent change)	2.8	[1.82-3.78] percent decrease	Illumina [796174]	N
1264	chr4	89045330	89045331	rs2199936	21943158	Middelberg RP	2011-09-24	BMC Med Genet	Genetic variants in LPL, OASL and TOMM40/APOE-C1-C2-C4 genes are associated with multiple cardiovascular-related traits.	Cardiovascular disease risk factors	11,683 European ancestry individuals	NA	4q22.1	ABCG2	rs2199936-A	0.12	2E-17	(UA)	0.188	[0.14-0.23] umol/l increase	Illumina [NR] (imputed)	N
1264	chr4	89045330	89045331	rs2199936	20884846	Yang Q	2010-09-30	Circ Cardiovasc Genet	Multiple genetic loci influence serum urate levels and their relationship with gout and cardiovascular disease risk factors.	Urate levels	28,283 European ancestry individuals	22,054 European ancestry individuals	4q22.1	ABCG2	rs2199936-A	0.11	3E-23	(Gout)	1.86	[1.64-2.10]	Affymetrix, Illumina [~ 2500000] (imputed)	N
1264	chr4	89045330	89045331	rs2199936	20884846	Yang Q	2010-09-30	Circ Cardiovasc Genet	Multiple genetic loci influence serum urate levels and their relationship with gout and cardiovascular disease risk factors.	Urate levels	28,283 European ancestry individuals	22,054 European ancestry individuals	4q22.1	ABCG2	rs2199936-A	0.11	1E-75	(Urate)	18.08	[16.16-20.00] umol/l increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1264	chr4	89047172	89047173	rs138651211	34387878	Kim KY	2021-08-13	Hepatology	Genome-wide association of individual vulnerability with alcoholic liver disease: A Korean Genome and Epidemiology Study.	Alcohol-associated liver disease in heavy drinkers	1,185 Korean ancestry cases, 2,246 Korean ancestry controls	NA	4q22.1		rs138651211-?	NR	2E-6		3.169	[1.961-5.123]	Affymetrix [7975321] (imputed)	N
1264	chr4	89050025	89050026	rs74904971	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	4q22.1		rs74904971-A	NR	3E-16		0.0232	[0.018-0.029] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
1264	chr4	89050025	89050026	rs74904971	32238385	Nakayama A	2020-04-01	Ann Rheum Dis	Subtype-specific gout susceptibility loci and enrichment of selection pressure on ABCG2 and ALDH2 identified by subtype genome-wide meta-analyses of clinically defined gout patients.	Gout (combined type)	905 Japanese ancestry male cases, 4,554 Japanese ancestry male controls	NA	4q22.1	ABCG2	rs74904971-A	0.276	2E-56		2.46	[2.20-2.76]	Illumina [7206774] (imputed)	N
1264	chr4	89050025	89050026	rs74904971	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	4q22.1	ABCG2	rs74904971-A	0.1961	5E-555		0.2167	[0.21-0.23] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1264	chr4	89050025	89050026	rs74904971	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	4q22.1	NR	rs74904971-A	0.2183	1E-285	(men)	0.2338	[0.22-0.25] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1264	chr4	89050025	89050026	rs74904971	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	4q22.1	NR	rs74904971-A	0.2047	1E-169	(women)	0.1692	[0.16-0.18] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1264	chr4	89052322	89052323	rs2231142	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Urolithiasis	6,223 European ancestry cases, 482,123 European ancestry controls, 11,699 East Asian ancestry cases, 167,027 East Asian ancestry controls	NA	4q22.1		rs2231142-T	NR	5E-12		0.0971	[0.069-0.125] unit increase	Affymetrix, Illumina [25845211] (imputed)	N
1264	chr4	89052322	89052323	rs2231142	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	129,405 East Asian ancestry individuals	NA	4q22.1		rs2231142-T	0.29623	1E-184		0.110289	[0.1-0.12] unit increase	Illumina [13475706] (imputed)	N
1264	chr4	89052322	89052323	rs2231142	33832965	Sandoval-Plata G	2021-04-08	Ann Rheum Dis	Variants in urate transporters, ADH1B, GCKR and MEPE genes associate with transition from asymptomatic hyperuricaemia to gout: results of the first gout versus asymptomatic hyperuricaemia GWAS in Caucasians using data from the UK Biobank.	Gout vs asymptomatic hyperuricemia	4,934 European ancestry cases, 56,948 European ancestry controls	2,115 European ancestry cases, 24,406 European ancestry controls	4q22.1	ABCG2	rs2231142-T	0.14	3E-109		1.65	[1.58-1.73]	Affymetrix [710030]	N
1264	chr4	89052322	89052323	rs2231142	33832965	Sandoval-Plata G	2021-04-08	Ann Rheum Dis	Variants in urate transporters, ADH1B, GCKR and MEPE genes associate with transition from asymptomatic hyperuricaemia to gout: results of the first gout versus asymptomatic hyperuricaemia GWAS in Caucasians using data from the UK Biobank.	Gout	7,049 European ancestry cases, 64,424 European ancestry controls	NA	4q22.1	ABCG2	rs2231142-T	0.12	3E-255		2.5	[2.37-2.64]	Affymetrix [710030]	N
1264	chr4	89052322	89052323	rs2231142	33287642	Said MA	2020-12-08	J Am Heart Assoc	Associations of Observational and Genetically Determined Caffeine Intake With Coronary Artery Disease and Diabetes Mellitus.	Caffeine consumption from coffee or tea	362,316 European ancestry individuals	NA	4q22.1	ABCG2, CERS2, CTSS, GOLPH3L, HORMAD1, SETDB1	rs2231142-G	0.886707	1E-26		0.03913	[0.032-0.046] unit increase	Affymetrix [19400838] (imputed)	N
1264	chr4	89052322	89052323	rs2231142	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	4q22.1	ABCG2	rs2231142-G	0.861564	7E-91	(4-hydroxychlorothalonil)	0.583	[0.53-0.64] unit decrease	Illumina [13039987] (imputed)	N
1264	chr4	89052322	89052323	rs2231142	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (min-P)	26,502 European ancestry individuals	NA	4q22.1	CA14, APH1A, C1orf54, C1orf51, MRPS21, PRPF3, RPRD2, TARS2, ECM1, ADAMTSL4, AL356356.1	rs2231142-?		2E-8				NR [7428630] (imputed)	N
1264	chr4	89052322	89052323	rs2231142	32514006	Cho SK	2020-06-08	Sci Rep	Polygenic analysis of the effect of common and low-frequency genetic variants on serum uric acid levels in Korean individuals.	Serum uric acid levels	6,881 Korean ancestry individuals	3,914 Korean ancestry individuals	4q22.1	ABCG2	rs2231142-T	0.2728	2E-29		0.2207	[0.18-0.26] unit increase	Affymetrix, Illumina [6129701] (imputed)	N
1264	chr4	89052322	89052323	rs2231142	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	4q22.1	ABCG2	rs2231142-T	0.0852	7E-21	(South Asian)	0.3369	[0.27-0.41] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1264	chr4	89052322	89052323	rs2231142	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Gout	13,179 European, African American and unknown ancestry cases, 750,634 European, African American and unknown ancestry controls	NA	4q22.1	ABCG2	rs2231142-?	NR	1E-290	(EA)			Affymetrix, Illumina [8249849] (imputed)	N
1264	chr4	89052322	89052323	rs2231142	31207883	Rivera-Paredez B	2019-06-14	Nutrients	Influence of Genetic and Non-Genetic Risk Factors for Serum Uric Acid Levels and Hyperuricemia in Mexicans.	Serum uric acid levels	396 Mexican ancestry individuals	3,693 Mexican ancestry individuals	4q22.1	ABCG2	rs2231142-T	NR	1E-18		0.23	[0.18-0.28] unit increase	Illumina [7200000] (imputed)	N
1264	chr4	89052322	89052323	rs2231142	30924126	Brackman DJ	2019-03-28	Clin Pharmacol Ther	Genome-wide Association and Functional Studies Reveal Novel Pharmacological Mechanisms for Allopurinol.	Response to allopurinol in gout (change in serum uric acid levels)	2,647 European ancestry cases, 303 East Asian cases, 115 African American cases, 114 Latino cases	318 European ancestry cases, 502 European ancestry cases	4q22.1	ABCG2	rs2231142-T	NR	8E-11		0.293	[0.19-0.39] mg/dL increase	Affymetrix, Illumina [NR] (imputed)	N
1264	chr4	89052322	89052323	rs2231142	30305239	Macias-Kauffer LR	2018-10-01	Int J Cardiol	Genetic contributors to serum uric acid levels in Mexicans and their effect on premature coronary artery disease.	Serum uric acid levels	2153 Mexican ancestry individuals	NA	4q22.1	ABCG2	rs2231142-T	NR	2E-10		0.23	[NR] unit increase	Illumina [865896] (imputed)	N
1264	chr4	89052322	89052323	rs2231142	30181573	Jing J	2018-09-04	Sci Rep	Genetics of serum urate concentrations and gout in a high-risk population, patients with chronic kidney disease.	Serum urate levels in chronic kidney disease	4,941 European ancestry cases	NA	4q22.1	ABCG2	rs2231142-T	0.11	9E-14		0.4	[0.3-0.5] mg/dl increase	Illumina [9281895] (imputed)	N
1264	chr4	89052322	89052323	rs2231142	29558500	Lee J	2018-03-20	PLoS One	Genome-wide association analysis identifies multiple loci associated with kidney disease-related traits in Korean populations.	Uric acid levels	7,064 Korean ancestry individuals	3,703 Korean ancestry individuals	4q22.1	ABCG2, PKD2	rs2231142-?		3E-39		0.2804	[0.24-0.32] unit increase	Affymetrix [345072]	N
1264	chr4	89052322	89052323	rs2231142	29453348	Chen CJ	2018-02-16	Sci Rep	ABCG2 contributes to the development of gout and hyperuricemia in a genome-wide association study.	Hyperuricemia	747 East Asian ancestry cases, 2,071 East Asian ancestry controls	NA	4q22.1	ABCG2	rs2231142-T	0.278	1E-7		2.15	[1.57-2.94] (TT genotype)	Affymetrix [537478]	N
1264	chr4	89052322	89052323	rs2231142	29453348	Chen CJ	2018-02-16	Sci Rep	ABCG2 contributes to the development of gout and hyperuricemia in a genome-wide association study.	Gout vs. Hyperuricemia	747 East Asian ancestry gout cases, 747 East Asian ancestry hyperuricemia cases	NA	4q22.1	ABCG2	rs2231142-T	0.278	1E-7		3.37	[2.43-4.68] (TT genotype)	Affymetrix [537478]	N
1264	chr4	89052322	89052323	rs2231142	29453348	Chen CJ	2018-02-16	Sci Rep	ABCG2 contributes to the development of gout and hyperuricemia in a genome-wide association study.	Gout	747 East Asian ancestry cases, 2,071 East Asian ancestry controls	NA	4q22.1	ABCG2	rs2231142-T	0.278	2E-42		4.34	[2.97-6.36] (TT genotype)	Affymetrix [537478]	N
1264	chr4	89052322	89052323	rs2231142	26902266	Giri AK	2016-02-23	Sci Rep	Genome wide association study of uric acid in Indian population and interaction of identified variants with Type 2 diabetes.	Serum uric acid levels	1,109 Indo-European ancestry individuals	3,725 Indo-European ancestry individuals	4q22.1	ABCG2	rs2231142-A	NR	8E-8		15.75	[10.01-21.50] unit increase	Illumina [539662]	N
1264	chr4	89052322	89052323	rs2231142	25967671	Li C	2015-05-13	Nat Commun	Genome-wide association analysis identifies three new risk loci for gout arthritis in Han Chinese.	Gout	1,255 Han Chinese ancestry male cases, 1,848 Han Chinese ancestry male controls	3,020 Han Chinese ancestry male cases, 4,424 Han Chinese ancestry male controls	4q22.1	NR	rs2231142-T	0.309	5E-10		1.82	[NR]	Affymetrix [603505]	N
1264	chr4	89052322	89052323	rs2231142	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in overweight individuals	up to 10,058 European ancestry male individuals, up to 7,189 European ancestry female individuals	NA	4q22.1	ABCG2	rs2231142-G	0.89	2E-30		0.215	[0.18-0.25] kg/m2 decrease	Affymetrix, Illumina [at least 188473] (imputed)	N
1264	chr4	89052322	89052323	rs2231142	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in overweight individuals	up to 10,058 European ancestry male individuals, up to 7,189 European ancestry female individuals	NA	4q22.1	ABCG2	rs2231142-G	0.89	2E-11	(women)	0.19	[0.14-0.24] kg/m2 decrease	Affymetrix, Illumina [at least 188473] (imputed)	N
1264	chr4	89052322	89052323	rs2231142	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in obese individuals	4,613 European ancestry male individuals, 4,690 European ancestry female individuals, 142 European ancestry individuals	NA	4q22.1	ABCG2	rs2231142-G	0.89	1E-7		0.135	[0.086-0.184] kg/m2 decrease	Affymetrix, Illumina [at least 188473] (imputed)	N
1264	chr4	89052322	89052323	rs2231142	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in lean individuals	up to 5,529 European ancestry male individuals, up to 9,753 European ancestry female individuals	NA	4q22.1	ABCG2	rs2231142-G	0.89	6E-13	(Women)	0.173	[0.13-0.22] kg/m2 decrease	Affymetrix, Illumina [at least 188473] (imputed)	N
1264	chr4	89052322	89052323	rs2231142	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in lean individuals	up to 5,529 European ancestry male individuals, up to 9,753 European ancestry female individuals	NA	4q22.1	ABCG2	rs2231142-G	0.89	2E-29		0.223	[0.18-0.26] kg/m2 decrease	Affymetrix, Illumina [at least 188473] (imputed)	N
1264	chr4	89052322	89052323	rs2231142	25676789	Wen CC	2015-05-01	Clin Pharmacol Ther	Genome-wide association study identifies ABCG2 (BCRP) as an allopurinol transporter and a determinant of drug response.	Serum uric acid levels in response to allopurinol in gout	1,607 European ancestry individuals, 238 East Asian individuals, 84 African American individuals, 85 Hispanic individuals, 13 individuals	NA	4q22.1	ABCG2	rs2231142-?		3E-7		0.2978	unit decrease	Affymetrix [NR] (imputed)	N
1264	chr4	89052322	89052323	rs2231142	24513273	Yang B	2014-02-11	BMC Med Genomics	A genome-wide association study identifies common variants influencing serum uric acid concentrations in a Chinese population.	Serum uric acid levels	3,451 Han Chinese ancestry individuals	8,830 Chinese ancestry individuals	4q22.1	ABCG2	rs2231142-T	0.31	3E-42		0.045	[0.037-0.053] unit increase	Affymetrix, Illumina [658288]	N
1264	chr4	89052322	89052323	rs2231142	23263486	Kottgen A	2012-12-23	Nat Genet	Genome-wide association analyses identify 18 new loci associated with serum urate concentrations.	Urate levels	49,825 European ancestry males, 60,522 European ancestry females	Up to 32,813 European ancestry individuals	4q22.1	ABCG2	rs2231142-T	0.11	1E-134		0.217	[0.20-0.23] mg/dl increase	Affymetrix, Illumina, Perlegen [2450547] (imputed)	N
1264	chr4	89052322	89052323	rs2231142	22229870	Karns R	2012-01-09	Ann Hum Genet	Genome-wide association of serum uric acid concentration: replication of sequence variants in an island population of the Adriatic coast of Croatia.	Uric acid levels	1,300 European ancestry individuals	NA	4q22.1	ABCG2	rs2231142-T	0.08	5E-6		27.4	[NR] umol/L increase	Affymetrix [2241249] (imputed)	N
1264	chr4	89052322	89052323	rs2231142	21983786	Sulem P	2011-10-09	Nat Genet	Identification of low-frequency variants associated with gout and serum uric acid levels.	Serum uric acid levels	15,506 European ancestry individuals	NA	4q22.1	ABCG2	rs2231142-T	0.101	2E-20		0.16	[0.12-0.19] s.d. increase	Illumina [15957390] (imputed)	N
1264	chr4	89052322	89052323	rs2231142	21983786	Sulem P	2011-10-09	Nat Genet	Identification of low-frequency variants associated with gout and serum uric acid levels.	Gout	968 European ancestry cases, 40,000 European ancestry controls	NA	4q22.1	ABCG2	rs2231142-T	0.101	3E-12		1.67	[1.43-1.92]	Illumina [15957390] (imputed)	N
1264	chr4	89052322	89052323	rs2231142	19503597	Kolz M	2009-06-05	PLoS Genet	Meta-analysis of 28,141 individuals identifies common variants within five new loci that influence uric acid concentrations.	Uric acid levels	12,328 European ancestry males, 15,813 European ancestry females	NA	4q22.1	ABCG2	rs2231142-T	0.11	2E-18	(men)	0.22	[0.171-0.270] mg/dl increase	Affymetrix, Illumina [2493963] (imputed)	N
1264	chr4	89052322	89052323	rs2231142	19503597	Kolz M	2009-06-05	PLoS Genet	Meta-analysis of 28,141 individuals identifies common variants within five new loci that influence uric acid concentrations.	Uric acid levels	12,328 European ancestry males, 15,813 European ancestry females	NA	4q22.1	ABCG2	rs2231142-T	0.11	1E-10	(women)	0.14	[0.096-0.181] mg/dl increase	Affymetrix, Illumina [2493963] (imputed)	N
1264	chr4	89052322	89052323	rs2231142	18834626	Dehghan A	2008-10-01	Lancet	Association of three genetic loci with uric acid concentration and risk of gout: a genome-wide association study.	Urate levels	11,847 European ancestry individuals	11,024 European ancestry individuals, 3,843 African American individuals	4q22.1	ABCG2	rs2231142-?	0.11	3E-60	(EA)	0.24	[0.20-0.28] unit increase	Affymetrix, Illumina [up to 530683]	N
1264	chr4	89054666	89054667	rs4148155	35079123	Chambers T	2022-01-25	Mol Psychiatry	Genetic common variants associated with cerebellar volume and their overlap with mental disorders: a study on 33,265 individuals from the UK-Biobank.	Total cerebellar volume (excluding Crus I vermis)	33,265 European ancestry individuals	NA	4q22.1		rs4148155-A	NR	7E-12		0.0376	[0.027-0.048] unit increase	Affymetrix [6193476] (imputed)	N
1264	chr4	89054666	89054667	rs4148155	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Urolithiasis	11,699 East Asian ancestry cases, 167,027 East Asian ancestry controls	NA	4q22.1		rs4148155-G	0.294256324	6E-10		0.09724846	[0.066-0.128] unit increase	Illumina [13429980] (imputed)	N
1264	chr4	89054666	89054667	rs4148155	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	4q22.1	ATP6V1E2, RHOQ, PIGF, CRIPT	rs4148155-?		2E-14				NR [7428630] (imputed)	N
1264	chr4	89054666	89054667	rs4148155	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Urolithiasis	6,638 Japanese ancestry cases, 205,815 Japanese ancestry controls	NA	4q22.1		rs4148155-G	0.294034354	2E-8		1.1179696	[1.075471412-1.162147166]	Illumina [8919992] (imputed)	N
1264	chr4	89054666	89054667	rs4148155	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		4q22.1	ABCG2	rs4148155-A	0.88671	3E-11		0.0143494	[0.01-0.019] unit increase	Affymetrix [12370749]	N
1264	chr4	89054666	89054667	rs4148155	32238385	Nakayama A	2020-04-01	Ann Rheum Dis	Subtype-specific gout susceptibility loci and enrichment of selection pressure on ABCG2 and ALDH2 identified by subtype genome-wide meta-analyses of clinically defined gout patients.	Renal underexcretion gout	654 Japanese ancestry male cases, 4,554 Japanese ancestry male controls	NA	4q22.1	ABCG2	rs4148155-G	0.277	3E-16		1.69	[1.49-1.91]	Illumina [7206774] (imputed)	N
1264	chr4	89054666	89054667	rs4148155	32238385	Nakayama A	2020-04-01	Ann Rheum Dis	Subtype-specific gout susceptibility loci and enrichment of selection pressure on ABCG2 and ALDH2 identified by subtype genome-wide meta-analyses of clinically defined gout patients.	Renal overload gout	486 Japanese ancestry male cases, 4,554 Japanese ancestry male controls	NA	4q22.1	ABCG2	rs4148155-G	0.277	1E-45		2.79	[2.42-3.22]	Illumina [7206774] (imputed)	N
1264	chr4	89054666	89054667	rs4148155	32238385	Nakayama A	2020-04-01	Ann Rheum Dis	Subtype-specific gout susceptibility loci and enrichment of selection pressure on ABCG2 and ALDH2 identified by subtype genome-wide meta-analyses of clinically defined gout patients.	Gout (normal type)	92 Japanese ancestry male cases, 4,554 Japanese ancestry male controls	NA	4q22.1	ABCG2	rs4148155-G	0.277	4E-8		2.34	[1.73-3.16]	Illumina [7206774] (imputed)	N
1264	chr4	89054666	89054667	rs4148155	32238385	Nakayama A	2020-04-01	Ann Rheum Dis	Subtype-specific gout susceptibility loci and enrichment of selection pressure on ABCG2 and ALDH2 identified by subtype genome-wide meta-analyses of clinically defined gout patients.	Gout	3,053 Japanese ancestry male cases, 4,554 Japanese ancestry male controls	NA	4q22.1	ABCG2	rs4148155-G	0.277	2E-101		2.23	[2.08-2.41]	Illumina [7206774] (imputed)	N
1264	chr4	89054666	89054667	rs4148155	31985003	Boocock J	2020-01-27	Hum Mol Genet	Genomic dissection of 43 serum urate-associated loci provides multiple insights into molecular mechanisms of urate control.	Urate levels	110,238 European ancestry individuals, 21,471 East Asian individuals	NA	4q22.1	ABCG2	rs4148155-A		2E-135		0.226	[0.21-0.24] mg/dl decrease	NR [NR] (imputed)	N
1264	chr4	89054666	89054667	rs4148155	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	4q22.1	NR	rs4148155-A	0.885393	9E-12		0.0221716	[0.016-0.029] unit increase	NR [NR]	N
1264	chr4	89054666	89054667	rs4148155	31784582	Chittoor G	2019-11-29	Sci Rep	Fine mapping and identification of serum urate loci in American Indians: The Strong Heart Family Study.	Serum urate levels	2,000 American Indian individuals	NA	4q22.1	ABCG2	rs4148155-G		2E-9		5.98	unit decrease (z-score)	Illumina [162718]	N
1264	chr4	89054666	89054667	rs4148155	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals	at least 101,293 European ancestry individuals	4q22.1	ABCG2	rs4148155-A	0.705	2E-149	(Japanese)	0.115	[0.11-0.12] unit decrease	Illumina [5864938] (imputed)	N
1264	chr4	89054666	89054667	rs4148155	30899057	Lee MG	2019-03-21	Sci Rep	Integrative Genome-Wide Association Studies of eQTL and GWAS Data for Gout Disease Susceptibility.	Gout	373 Han Chinese ancestry cases, 6,721 Han Chinese ancestry controls	385 Han Chinese ancestry cases, 7,445 Han Chinese ancestry controls	4q22.1	PKD2, NAP1L5, ABCG2	rs4148155-G	0.31	4E-35		2.0	[NR]	Affymetrix [607675]	N
1264	chr4	89054666	89054667	rs4148155	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	4q22.1		rs4148155-?	NR	1E-11				NR [~ 8900000] (imputed)	N
1264	chr4	89054666	89054667	rs4148155	30181573	Jing J	2018-09-04	Sci Rep	Genetics of serum urate concentrations and gout in a high-risk population, patients with chronic kidney disease.	Gout in chronic kidney disease	1,217 European ancestry cases, 3,724 European ancestry controls	NA	4q22.1	ABCG2	rs4148155-G	0.11	5E-9		1.55	[1.34-1.79]	Illumina [9281895] (imputed)	N
1264	chr4	89054666	89054667	rs4148155	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum uric acid levels	109,029 Japanese ancestry individuals	NA	4q22.1	ABCG2	rs4148155-?	NR	2E-132		0.1136	[0.1-0.12] unit increase novel	Illumina [6108953] (imputed)	N
1264	chr4	89054666	89054667	rs4148155	20139978	Kamatani Y	2010-02-07	Nat Genet	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Urate levels	8,868 Japanese ancestry individuals	NA	4q22.1	ABCG2	rs4148155-G	0.3	1E-13		0.121	[0.09-0.152] unit increase	Illumina [561583]	N
1264	chr4	89060908	89060909	rs4148152	24513273	Yang B	2014-02-11	BMC Med Genomics	A genome-wide association study identifies common variants influencing serum uric acid concentrations in a Chinese population.	Serum uric acid levels	3,451 Han Chinese ancestry individuals	8,830 Chinese ancestry individuals	4q22.1	ABCG2	rs4148152-C	0.33	3E-18		0.029	[0.021-0.037] unit decrease	Affymetrix, Illumina [658288]	N
1264	chr4	89061113	89061114	rs2231137	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	4q22.1	ABCG2	rs2231137-C	0.832527	5E-20	(4-hydroxychlorothalonil)	0.244	[0.19-0.3] unit increase	Illumina [13039987] (imputed)	N
1264	chr4	89064580	89064581	rs3114018	29558500	Lee J	2018-03-20	PLoS One	Genome-wide association analysis identifies multiple loci associated with kidney disease-related traits in Korean populations.	Uric acid levels	7,064 Korean ancestry individuals	3,703 Korean ancestry individuals	4q22.1	ABCG2	rs3114018-?		2E-16		0.1648	[0.13-0.20] unit decrease	Affymetrix [345072]	N
1264	chr4	89064580	89064581	rs3114018	24513273	Yang B	2014-02-11	BMC Med Genomics	A genome-wide association study identifies common variants influencing serum uric acid concentrations in a Chinese population.	Serum uric acid levels	3,451 Han Chinese ancestry individuals	8,830 Chinese ancestry individuals	4q22.1	ABCG2	rs3114018-T	0.38	4E-20		0.029	[0.021-0.037] unit decrease	Affymetrix, Illumina [658288]	N
1264	chr4	89064580	89064581	rs3114018	23064961	Shaffer JR	2012-10-11	J Dent Res	GWAS of dental caries patterns in the permanent dentition.	Dental caries	920 European ancestry individuals	NA	4q22.1	PKD2, SPP1, MEPE, IBSP, DMP1, DSPP, ABCG2	rs3114018-?	NR	7E-8	(DMFS5mand,DMFS5)			Illumina [518997]	N
1264	chr4	89078923	89078924	rs2622604	26112879	Rudkowska I	2015-06-20	J Nutrigenet Nutrigenomics	Interaction between Common Genetic Variants and Total Fat Intake on Low-Density Lipoprotein Peak Particle Diameter: A Genome-Wide Association Study.	LDL peak particle diameter (total fat intake interaction)	541 European ancestry individuals	NA	4q22.1	ABCG2	rs2622604-T	0.23	9E-6		0.04	[0.02-0.06] unit decrease	Illumina [1632371] (imputed)	N
1264	chr4	89083665	89083666	rs3114020	27899376	Nakayama A	2016-11-29	Ann Rheum Dis	GWAS of clinically defined gout and subtypes identifies multiple susceptibility loci that include urate transporter genes.	Gout	945 Japanese ancestry cases, 1,213 Japanese ancestry controls	1,396 Japanese ancestry cases, 1,268 Japanese ancestry controls, 1,319 European ancestry cases, 514 European ancestry controls, 971 Polynesian ancestry cases, 565 Polynesian ancestry controls	4q22.1	ABCG2	rs3114020-C	0.724	9E-35	(Japanese)	1.89	[1.71-2.09]	Illumina [570442]	N
1264	chr4	89086743	89086744	rs2622608	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	4q22.1	ABCG2	rs2622608-A	0.797	2E-18	(AA)	0.1421	[0.11-0.17] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1264	chr4	89090876	89090877	rs10011796	25676789	Wen CC	2015-05-01	Clin Pharmacol Ther	Genome-wide association study identifies ABCG2 (BCRP) as an allopurinol transporter and a determinant of drug response.	Serum uric acid levels in response to allopurinol in gout	1,607 European ancestry individuals, 238 East Asian individuals, 84 African American individuals, 85 Hispanic individuals, 13 individuals	NA	4q22.1	PKD2, ABCG2	rs10011796-?		2E-8	(EA)	0.2799	[0.18-0.38] unit increase	Affymetrix [NR] (imputed)	N
1264	chr4	89091186	89091187	rs2725271	25676789	Wen CC	2015-05-01	Clin Pharmacol Ther	Genome-wide association study identifies ABCG2 (BCRP) as an allopurinol transporter and a determinant of drug response.	Serum uric acid levels in response to allopurinol in gout	1,607 European ancestry individuals, 238 East Asian individuals, 84 African American individuals, 85 Hispanic individuals, 13 individuals	NA	4q22.1	ABCG2	rs2725271-?		1E-7		0.2376	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1264	chr4	89094063	89094064	rs2622629	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	4q22.1	NR	rs2622629-C	NR	3E-37		0.0336	[0.029-0.039] unit increase	Affymetrix [9000000] (imputed)	N
1264	chr4	89094063	89094064	rs2622629	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	4q22.1	ABCG2	rs2622629-T	0.6359	8E-44		0.056927	[0.049-0.065] mg/dL decrease	Affymetrix, Illumina [8217339] (imputed)	N
1264	chr4	89095689	89095690	rs55930652	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum uric acid levels	109,029 Japanese ancestry individuals	NA	4q22.1	NR	rs55930652-?	NR	2E-36		0.07758	[0.066-0.09] unit decrease novel	Illumina [6108953] (imputed)	N
1264	chr4	89096640	89096641	rs7658584	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Squamous cell lung carcinoma	7,426 European ancestry cases, 55,627 European ancestry controls	NA		ABCG2	rs7658584-A	0.154581981	2E-6		1.1268572	[1.072285124-1.184206472]	Illumina [10439017] (imputed)	N
1264	chr4	89113496	89113497	rs13152371	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	4q22.1	NR	rs13152371-C	NR	2E-13		0.0201	[0.015-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
1264	chr4	89119658	89119659	rs10856870	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	4q22.1	NR	rs10856870-T	0.45	2E-97		0.0386	[0.035-0.042] unit decrease	NR [NR]	N
1264	chr4	89126646	89126647	rs7672194	33832965	Sandoval-Plata G	2021-04-08	Ann Rheum Dis	Variants in urate transporters, ADH1B, GCKR and MEPE genes associate with transition from asymptomatic hyperuricaemia to gout: results of the first gout versus asymptomatic hyperuricaemia GWAS in Caucasians using data from the UK Biobank.	Gout vs asymptomatic hyperuricemia	4,934 European ancestry cases, 56,948 European ancestry controls	2,115 European ancestry cases, 24,406 European ancestry controls	4q22.1	ABCG2	rs7672194-T	0.48	2E-16		1.16	[1.12-1.20]	Affymetrix [710030]	N
1265	chr4	89140832	89140833	rs6840723	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Valine levels	115,052 European ancestry individuals	NA	4q22.1		rs6840723-A	0.746249	6E-20		0.0423931	[0.033-0.051] unit increase	NR [11722792] (imputed)	N
1265	chr4	89140832	89140833	rs6840723	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total concentration of branched-chain amino acids (leucine + isoleucine + valine)	115,051 European ancestry individuals	NA	4q22.1		rs6840723-A	0.746247	1E-16		0.0382586	[0.029-0.047] unit increase	NR [11722792] (imputed)	N
1265	chr4	89140832	89140833	rs6840723	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Leucine levels	115,078 European ancestry individuals	NA	4q22.1		rs6840723-A	0.746225	3E-12		0.0319507	[0.023-0.041] unit increase	NR [11722792] (imputed)	N
1265	chr4	89140832	89140833	rs6840723	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Isoleucine levels	115,079 European ancestry individuals	NA	4q22.1		rs6840723-A	0.746227	2E-10		0.0296535	[0.02-0.039] unit increase	NR [11722792] (imputed)	N
1265	chr4	89152062	89152063	rs10032109	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	4q22.1	NR	rs10032109-T	NR	4E-47		0.0446	[0.039-0.051] unit decrease	Affymetrix [9000000] (imputed)	N
1265	chr4	89160560	89160561	rs13120254	32514006	Cho SK	2020-06-08	Sci Rep	Polygenic analysis of the effect of common and low-frequency genetic variants on serum uric acid levels in Korean individuals.	Serum uric acid levels	6,881 Korean ancestry individuals	3,914 Korean ancestry individuals	4q22.1	ABCG2, PPM1K	rs13120254-A	0.5953	9E-15		0.138	[0.1-0.17] unit increase	Affymetrix, Illumina [6129701] (imputed)	N
1265	chr4	89163522	89163523	rs34226052	27005778	Kettunen J	2016-03-23	Nat Commun	Genome-wide study for circulating metabolites identifies 62 loci and reveals novel systemic effects of LPA.	Metabolite levels (small molecules and protein measures)	2,118 Erasmus Rucphen (founder/genetic isolate), 22,807 European ancestry individuals	NA	4q22.1	NR	rs34226052-?	NR	5E-12	(Valine, conditioned)	0.0967459	[0.069-0.124] unit decrease	Affymetrix, Illumina, Perlegen [12133295] (imputed)	N
1265	chr4	89183130	89183131	rs1129043	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	4q22.1	NR	rs1129043-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
1265	chr4	89192791	89192792	rs6821589	34834527	Park S	2021-11-10	J Pers Med	Interaction of Polygenetic Variants for Gestational Diabetes Mellitus Risk with Breastfeeding and Korean Balanced Diet to Influence Type 2 Diabetes Risk in Later Life in a Large Hospital-Based Cohort.	Gestational diabetes mellitus	384 cases, 33,956 controls	NA	4q22.1		rs6821589-?	NR	8E-7		2.86	[1.8-4.54]	Affymetrix [NR]	N
1265	chr4	89196197	89196198	rs72661666	32472697	Verma SS	2020-05-30	Clin Pharmacol Ther	Genome-wide association study of platelet reactivity and cardiovascular response in patients treated with clopidogrel: a study by the International Clopidogrel Pharmacogenomics Consortium (ICPC).	Stent thrombosis in response to clopidogrel treatment	37 European ancestry cases, 2,542 European ancestry controls	NA	4q22.1	GPRIN3	rs72661666-C	0.988771	7E-6		12.519281	NR	Illumina [5009928] (imputed)	N
1265	chr4	89201006	89201007	rs7661312	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	4q22.1	PPM1K	rs7661312-?	NR	2E-17	(Val)	0.09077292	NR unit increase	Illumina [609262]	N
1265	chr4	89201006	89201007	rs7661312	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	4q22.1	PPM1K	rs7661312-?	NR	4E-13	(Val)	0.091263585	NR unit increase	Illumina [609262]	N
1265	chr4	89203669	89203670	rs893971	18846501	Sonuga-Barke EJ	2008-10-07	Am J Med Genet B Neuropsychiatr Genet	Does parental expressed emotion moderate genetic effects in ADHD? An exploration using a genome wide association scan.	Conduct disorder (maternal expressed emotions interaction)	909 European ancestry trios	NA	4q22.1	PPM1K	rs893971-T	0.6	7E-6	(maternal warmth)	1.15	[NR] unit decrease	Perlegen [429901]	N
1265	chr4	89205659	89205660	rs74962708	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	4q22.1	NR	rs74962708-T	NR	3E-12		0.074	[0.053-0.095] unit increase	Affymetrix [9000000] (imputed)	N
1265	chr4	89206229	89206230	rs9637599	27005778	Kettunen J	2016-03-23	Nat Commun	Genome-wide study for circulating metabolites identifies 62 loci and reveals novel systemic effects of LPA.	Metabolite levels (small molecules and protein measures)	2,118 Erasmus Rucphen (founder/genetic isolate), 22,807 European ancestry individuals	NA	4q22.1	PPM1K	rs9637599-C	0.47	2E-35	(Valine)	0.11	[0.09-0.13] unit increase	Affymetrix, Illumina, Perlegen [12133295] (imputed)	N
1265	chr4	89208564	89208565	rs4693210	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Alanine levels	115,078 European ancestry individuals	NA	4q22.1		rs4693210-A	0.559787	4E-15		0.0324554	[0.024-0.041] unit increase	NR [11722792] (imputed)	N
1265	chr4	89213076	89213077	rs34813495	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	4q22.1	LOC105369192	rs34813495-?	NR	2E-16	(Leu)	0.06857474	NR unit increase	Illumina [609262]	N
1265	chr4	89213076	89213077	rs34813495	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	4q22.1	LOC105369192	rs34813495-?	NR	1E-6	(Leu)	0.060484387	NR unit increase	Illumina [609262]	N
1265	chr4	89216767	89216768	rs28793136	33832965	Sandoval-Plata G	2021-04-08	Ann Rheum Dis	Variants in urate transporters, ADH1B, GCKR and MEPE genes associate with transition from asymptomatic hyperuricaemia to gout: results of the first gout versus asymptomatic hyperuricaemia GWAS in Caucasians using data from the UK Biobank.	Gout vs asymptomatic hyperuricemia	4,934 European ancestry cases, 56,948 European ancestry controls	2,115 European ancestry cases, 24,406 European ancestry controls	4q22.1	PPM1K-DT	rs28793136-C	0.08	5E-20		1.32	[1.25-1.40]	Affymetrix [710030]	N
1265	chr4	89216767	89216768	rs28793136	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	4q22.1	NR	rs28793136-C	NR	6E-55		0.0707	[0.062-0.08] unit increase	Affymetrix [9000000] (imputed)	N
1265	chr4	89220943	89220944	rs9995093	22925353	Lee HJ	2012-08-25	J Affect Disord	A genome-wide association study of seasonal pattern mania identifies NF1A as a possible susceptibility gene for bipolar disorder.	Bipolar disorder	2,191 European ancestry cases, 1,434 European ancestry controls	NA	4q22.1	PIGY	rs9995093-?	NR	7E-6	(NSM vs. Control)	2.067	[NR]	Affymetrix [703012]	N
1265	chr4	89222826	89222827	rs7678928	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	4q22.1	BC027846	rs7678928-C	0.637799	7E-13	(tiglylcarnitine (C5:1-DC))	0.168	[0.12-0.21] unit increase	Illumina [13039987] (imputed)	N
1265	chr4	89222826	89222827	rs7678928	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	1,509 European ancestry individuals	4q22.1	BC027846	rs7678928-C	0.637799	7E-13	(tiglylcarnitine (C5:1-DC))	0.168	[0.12-0.21] unit increase	Illumina [13039987] (imputed)	N
1265	chr4	89222826	89222827	rs7678928	27898682	Lotta LA	2016-11-29	PLoS Med	Genetic Predisposition to an Impaired Metabolism of the Branched-Chain Amino Acids and Risk of Type 2 Diabetes: A Mendelian Randomisation Analysis.	Branched-chain amino acid levels (Isoleucine)	16,596 European ancestry individuals	NA	4q22.1	PPM1K	rs7678928-T	0.46	6E-19		0.09	[0.065-0.115] unit increase	Affymetrix, Illumina [10500000] (imputed)	N
1265	chr4	89225087	89225088	rs9995984	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial valine	4,348 individuals	NA	4q22.1		rs9995984-G	0.467395124	7E-13		0.15431	[0.11-0.2] mmol/l increase	Illumina [7701709] (imputed)	N
1265	chr4	89225087	89225088	rs9995984	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting valine	4,734 individuals	NA	4q22.1		rs9995984-G	0.466225697	5E-12		0.142046	[0.1-0.18] mmol/l increase	Illumina [7701709] (imputed)	N
1265	chr4	89225170	89225171	rs10018448	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Valine levels	115,052 European ancestry individuals	NA	4q22.1		rs10018448-A	0.464689	1E-149		0.105058	[0.097-0.113] unit decrease	NR [11722792] (imputed)	N
1265	chr4	89225170	89225171	rs10018448	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total concentration of branched-chain amino acids (leucine + isoleucine + valine)	115,051 European ancestry individuals	NA	4q22.1		rs10018448-A	0.464693	9E-129		0.0968618	[0.089-0.105] unit decrease	NR [11722792] (imputed)	N
1265	chr4	89225170	89225171	rs10018448	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Leucine levels	115,078 European ancestry individuals	NA	4q22.1		rs10018448-A	0.464692	1E-108		0.0880953	[0.08-0.096] unit decrease	NR [11722792] (imputed)	N
1265	chr4	89225170	89225171	rs10018448	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Isoleucine levels	115,079 European ancestry individuals	NA	4q22.1		rs10018448-A	0.464688	1E-60		0.0668681	[0.059-0.075] unit decrease	NR [11722792] (imputed)	N
1265	chr4	89226421	89226422	rs1440581	27898682	Lotta LA	2016-11-29	PLoS Med	Genetic Predisposition to an Impaired Metabolism of the Branched-Chain Amino Acids and Risk of Type 2 Diabetes: A Mendelian Randomisation Analysis.	Branched-chain amino acid levels (Valine)	16,596 European ancestry individuals	NA	4q22.1	PPM1K	rs1440581-C	0.53	4E-24		0.1	[-0.15480-0.35480] unit increase	Affymetrix, Illumina [10500000] (imputed)	N
1265	chr4	89226421	89226422	rs1440581	27898682	Lotta LA	2016-11-29	PLoS Med	Genetic Predisposition to an Impaired Metabolism of the Branched-Chain Amino Acids and Risk of Type 2 Diabetes: A Mendelian Randomisation Analysis.	Branched-chain amino acid levels (Leucine)	16,596 European ancestry individuals	NA	4q22.1	PPM1K	rs1440581-C	0.53	4E-25		0.08	[0.055-0.105] unit increase	Affymetrix, Illumina [10500000] (imputed)	N
1265	chr4	89226421	89226422	rs1440581	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	4q22.1	PPM1K	rs1440581-T	0.46	3E-12	(valine)	0.008	[0.006-0.01] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
1265	chr4	89226421	89226422	rs1440581	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	4q22.1	PPM1K	rs1440581-T	0.46	1E-19	(leucine)	0.008	[0.006-0.01] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
1265	chr4	89226421	89226422	rs1440581	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	4q22.1	PPM1K	rs1440581-T	0.46	1E-16	(3-methyl-2-oxovalerate)	0.014	[0.01-0.018] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
1265	chr4	89226421	89226422	rs1440581	22916037	Inouye M	2012-08-16	PLoS Genet	Novel Loci for metabolic networks and multi-tissue expression studies reveal genes for atherosclerosis.	Metabolite levels	6,608 European ancestry individuals	NA	4q22.1	HERC6, PPM1K	rs1440581-?	0.47	1E-10				Illumina [~ 2000000] (imputed)	N
1265	chr4	89226421	89226422	rs1440581	22286219	Kettunen J	2012-01-29	Nat Genet	Genome-wide association study identifies multiple loci influencing human serum metabolite levels.	Metabolite levels	8,330 European ancestry individuals	NA	4q22.1	PPM1K	rs1440581-?	NR	2E-16	(Fischer's ratio)	0.13	[0.091-0.169] unit increase	Illumina [~ 7700000] (imputed)	N
1265	chr4	89239491	89239492	rs1545207	33832965	Sandoval-Plata G	2021-04-08	Ann Rheum Dis	Variants in urate transporters, ADH1B, GCKR and MEPE genes associate with transition from asymptomatic hyperuricaemia to gout: results of the first gout versus asymptomatic hyperuricaemia GWAS in Caucasians using data from the UK Biobank.	Gout vs asymptomatic hyperuricemia	4,934 European ancestry cases, 56,948 European ancestry controls	2,115 European ancestry cases, 24,406 European ancestry controls	4q22.1	PPM1K-DT	rs1545207-A	0.28	3E-11		1.14	[1.09-1.18]	Affymetrix [710030]	N
1265	chr4	89243817	89243818	rs10022462	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	4q22.1		rs10022462-T	NR	3E-10		1.04	[1.03-1.05]	Affymetrix, Illumina [NR] (imputed)	N
1265	chr4	89243817	89243818	rs10022462	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	4q22.1	LOC105369192	rs10022462-T	0.44	2E-9	(EA)	1.04	[1.02-1.06] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
1265	chr4	89243817	89243818	rs10022462	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	4q22.1	PPM1K	rs10022462-T	0.45	5E-11	(2-aminobutyrate)	0.012	[0.0081-0.0159] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
1265	chr4	89249060	89249061	rs4693211	33832965	Sandoval-Plata G	2021-04-08	Ann Rheum Dis	Variants in urate transporters, ADH1B, GCKR and MEPE genes associate with transition from asymptomatic hyperuricaemia to gout: results of the first gout versus asymptomatic hyperuricaemia GWAS in Caucasians using data from the UK Biobank.	Gout vs asymptomatic hyperuricemia	4,934 European ancestry cases, 56,948 European ancestry controls	2,115 European ancestry cases, 24,406 European ancestry controls	4q22.1	PPM1K-DT	rs4693211-C	0.07	2E-22		1.37	[1.28-1.45]	Affymetrix [710030]	N
1265	chr4	89249060	89249061	rs4693211	33832965	Sandoval-Plata G	2021-04-08	Ann Rheum Dis	Variants in urate transporters, ADH1B, GCKR and MEPE genes associate with transition from asymptomatic hyperuricaemia to gout: results of the first gout versus asymptomatic hyperuricaemia GWAS in Caucasians using data from the UK Biobank.	Gout	7,049 European ancestry cases, 64,424 European ancestry controls	NA	4q22.1	PPM1K-DT	rs4693211-C	0.06	2E-42		1.64	[1.53-1.76]	Affymetrix [710030]	N
1265	chr4	89249060	89249061	rs4693211	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	4q22.1	NR	rs4693211-C	NR	1E-82		0.0941	[0.084-0.104] unit increase	Affymetrix [9000000] (imputed)	N
1266	chr4	89305283	89305284	rs28532472	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	4q22.1	NR	rs28532472-C	NR	3E-12		0.0212	[0.015-0.027] unit increase	Affymetrix [9000000] (imputed)	N
1266	chr4	89348160	89348161	rs779437994	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Lean body mass	3,399 whole genome sequenced individuals, 11,801 European ancestry individuals	10,676 European ancestry individuals	4q22.1	HERC6	rs779437994-A	0.9979	9E-6		1.3479	[0.75-1.94] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1267	chr4	89421085	89421086	rs10516809	22424883	Imboden M	2012-03-15	J Allergy Clin Immunol	Genome-wide association study of lung function decline in adults with and without asthma.	Pulmonary function decline	1,441 European ancestry asthma cases, 2,677 European ancestry controls	1,160 European ancestry asthma cases, 10,858 European ancestry controls	4q22.1	HERC5	rs10516809-?	NR	9E-6	(FEV1 decline in asthmatics)	0.3063	[0.17-0.44] unit increase	Illumina [~ 2500000] (imputed)	N
1267	chr4	89453521	89453522	rs2869665	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	4q22.1	NR	rs2869665-A	0.78	8E-12		0.0154	[0.011-0.02] unit decrease	NR [NR]	N
1267	chr4	89466334	89466335	rs11932693	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	4q22.1	NR	rs11932693-?	NR	2E-7		0.0091307	[0.0057-0.0125] unit increase	Affymetrix [805426] (imputed)	N
1267	chr4	89513011	89513012	rs113228472	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	Intergenic	rs113228472-A	0.04	4E-6		0.126	NR unit decrease	Illumina [NR] (imputed)	N
1267	chr4	89518458	89518459	rs28549240	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Alcohol consumption x traumatic event in childhood (felt hated by family member) interaction	46,394 European ancestry individuals	NA	4q22.1		rs28549240-?	NR	1E-8		1.7951	[1.18-2.41] unit increase	Affymetrix [NR] (imputed)	N
1268	chr4	89533003	89533004	rs3017896	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	4q22.1	HERC3	rs3017896-C	NR	2E-8		0.0173656	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
1268	chr4	89533003	89533004	rs3017896	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	4q22.1	HERC3	rs3017896-C	NR	2E-8		0.0172068	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
1268	chr4	89566202	89566203	rs10016030	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	4q22.1	HERC3	rs10016030-T	NR	1E-8		0.0204262	[0.013-0.027] unit decrease	Affymetrix [319769] (imputed)	N
1268	chr4	89566202	89566203	rs10016030	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	4q22.1	HERC3	rs10016030-T	NR	9E-9		0.0205537	[0.014-0.028] unit decrease	Affymetrix [319769] (imputed)	N
1268	chr4	89581390	89581391	rs115009978	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls, 33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	4q22.1		rs115009978-T	NR	9E-9		0.0999	[0.066-0.134] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1268	chr4	89600819	89600820	rs3017917	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	4q22.1	NR	rs3017917-?	NR	3E-6		0.0082995	[0.0048-0.0118] unit increase	Affymetrix [805426] (imputed)	N
1268	chr4	89612872	89612873	rs9992239	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	HERC3	rs9992239-C	0.044	2E-6		0.023	unit decrease	Illumina [NR] (imputed)	N
1268	chr4	89619960	89619961	rs74797397	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	4q22.1	HERC3	rs74797397-G	NR	3E-9		0.0316552	[0.021-0.042] unit decrease	Affymetrix [319769] (imputed)	N
1268	chr4	89619960	89619961	rs74797397	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	4q22.1	HERC3	rs74797397-G	NR	2E-9		0.0318442	[0.021-0.042] unit decrease	Affymetrix [319769] (imputed)	N
1268	chr4	89625426	89625427	rs1804080	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	4q22.1	NR	rs1804080-C	NR	2E-9		0.0202	[0.014-0.027] unit increase	Affymetrix [9000000] (imputed)	N
1268	chr4	89625426	89625427	rs1804080	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 157,516 European ancestry women, up to 180,131 African American, South Asian, East Asian and Hispanic ancestry women	up to 62,368 European ancestry women	4q22.1	HERC3	rs1804080-G	0.8373	2E-16		0.034	[0.026-0.042] unit increase	Affymetrix, Illumina [at least 228985]	N
1268	chr4	89625426	89625427	rs1804080	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 157,516 European ancestry women	up to 62,368 European ancestry women	4q22.1	HERC3	rs1804080-G	0.8399	5E-15		0.0344	[0.026-0.043] unit increase	Affymetrix, Illumina [at least 228985]	N
1268	chr4	89625426	89625427	rs1804080	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	288,492 European ancestry individuals, up to 15,687 African American individuals, up to 29,315 South Asian ancestry individuals, up to 6,800 East Asian ancestry individuals, up to 4,075 Hispanic ancestry individuals	132,177 European ancestry individuals	4q22.1	HERC3	rs1804080-G	0.8381	2E-12		0.0206	[0.015-0.026] unit increase	Affymetrix, Illumina [at least 228985]	N
1268	chr4	89625426	89625427	rs1804080	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	288,492 European ancestry individuals	132,177 European ancestry individuals	4q22.1	HERC3	rs1804080-G	0.8388	1E-11		0.0212	[0.015-0.027] unit increase	Affymetrix, Illumina [at least 228985]	N
1268	chr4	89638549	89638550	rs2604217	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	4q22.1		rs2604217-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1269	chr4	89653256	89653257	rs1801915	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	4q22.1		rs1801915-G	0.853	4E-11		0.011	[0.0071-0.0149] unit increase	NR [NR] (imputed)	N
1269	chr4	89667590	89667591	rs17014483	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs17014483-T	0.674	2E-6		0.012	unit decrease	Illumina [NR] (imputed)	N
1269	chr4	89668858	89668859	rs7657817	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 157,516 European ancestry women, up to 180,131 African American, South Asian, East Asian and Hispanic ancestry women	up to 62,368 European ancestry women	4q22.1	FAM13A	rs7657817-C	0.8148	6E-12		0.0263	[0.019-0.034] unit increase	Affymetrix, Illumina [at least 228985]	N
1269	chr4	89668858	89668859	rs7657817	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 157,516 European ancestry women	up to 62,368 European ancestry women	4q22.1	FAM13A	rs7657817-C	0.8297	9E-13		0.0294	[0.021-0.037] unit increase	Affymetrix, Illumina [at least 228985]	N
1269	chr4	89668858	89668859	rs7657817	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	288,492 European ancestry individuals, up to 15,687 African American individuals, up to 29,315 South Asian ancestry individuals, up to 6,800 East Asian ancestry individuals, up to 4,075 Hispanic ancestry individuals	132,177 European ancestry individuals	4q22.1	FAM13A	rs7657817-C	0.8153	5E-9		0.0159	[0.011-0.021] unit increase	Affymetrix, Illumina [at least 228985]	N
1269	chr4	89668858	89668859	rs7657817	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	288,492 European ancestry individuals	132,177 European ancestry individuals	4q22.1	FAM13A	rs7657817-C	0.8277	2E-9		0.0178	[0.012-0.023] unit increase	Affymetrix, Illumina [at least 228985]	N
1269	chr4	89669232	89669233	rs12152672	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	4q22.1	FAM13A	rs12152672-C	NR	2E-13		0.020853	[0.015-0.026] unit decrease	Affymetrix [319769] (imputed)	N
1269	chr4	89669232	89669233	rs12152672	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	4q22.1	FAM13A	rs12152672-C	NR	1E-13		0.0209326	[0.015-0.026] unit decrease	Affymetrix [319769] (imputed)	N
1269	chr4	89669232	89669233	rs12152672	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	4q22.1	FAM13A	rs12152672-C	NR	4E-12		0.0197762	[0.014-0.025] unit decrease	Affymetrix [321114] (imputed)	N
1269	chr4	89669232	89669233	rs12152672	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	4q22.1	FAM13A	rs12152672-C	NR	2E-12		0.0200429	[0.014-0.026] unit decrease	Affymetrix [321169] (imputed)	N
1269	chr4	89669873	89669874	rs28673752	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	4q22.1	FAM13A	rs28673752-T	NR	4E-18		0.0323893	[0.025-0.04] unit decrease	Affymetrix [321169] (imputed)	N
1269	chr4	89670613	89670614	rs3775389	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	4q22.1	FAM13A	rs3775389-C	NR	2E-27		0.0421944	[0.035-0.05] unit decrease	Affymetrix [319769] (imputed)	N
1269	chr4	89670613	89670614	rs3775389	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	4q22.1	FAM13A	rs3775389-C	NR	4E-27		0.0418983	[0.034-0.05] unit decrease	Affymetrix [319769] (imputed)	N
1269	chr4	89670613	89670614	rs3775389	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	4q22.1	FAM13A	rs3775389-C	NR	5E-16		0.0317622	[0.024-0.039] unit decrease	Affymetrix [321114] (imputed)	N
1269	chr4	89670613	89670614	rs3775389	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	4q22.1	NR	rs3775389-?	NR	9E-17				Affymetrix [~ 8270000] (imputed)	N
1269	chr4	89670613	89670614	rs3775389	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	4q22.1	NR	rs3775389-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
1269	chr4	89672804	89672805	rs7662156	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	4q22.1		rs7662156-T	0.179926	4E-8		0.0281769	[0.018-0.038] unit decrease	NR [11722792] (imputed)	N
1269	chr4	89676779	89676780	rs188160653	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs188160653-T	0.992	2E-6		0.072	unit increase	Illumina [NR] (imputed)	N
1269	chr4	89676779	89676780	rs188160653	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs188160653-T	0.992	3E-6		0.345	NR unit increase	Illumina [NR] (imputed)	N
1269	chr4	89676867	89676867	rs753362520	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	4q22.1	FAM13A	rs753362520-CTA	NR	1E-19		0.0283216	[0.022-0.034] unit decrease	Affymetrix [319769] (imputed)	N
1269	chr4	89676867	89676867	rs753362520	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	4q22.1	FAM13A	rs753362520-CTA	NR	1E-19		0.0282608	[0.022-0.034] unit decrease	Affymetrix [319769] (imputed)	N
1269	chr4	89676867	89676867	rs753362520	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	4q22.1	FAM13A	rs753362520-CTA	NR	1E-13		0.0233969	[0.017-0.03] unit decrease	Affymetrix [321114] (imputed)	N
1269	chr4	89676867	89676867	rs753362520	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	4q22.1	FAM13A	rs753362520-CTA	NR	6E-15		0.0245964	[0.018-0.031] unit decrease	Affymetrix [321169] (imputed)	N
1269	chr4	89677536	89677537	rs1965869	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycine levels	114,978 European ancestry individuals	NA	4q22.1		rs1965869-T	0.28428	3E-8		0.0239642	[0.015-0.032] unit increase	NR [11722792] (imputed)	N
1269	chr4	89681947	89681948	rs11097195	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	4q22.1	FAM13A	rs11097195-A	NR	2E-8		0.0228351	[0.015-0.031] unit increase	Affymetrix [321788] (imputed)	N
1269	chr4	89681947	89681948	rs11097195	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	4q22.1	FAM13A	rs11097195-A	NR	7E-9		0.0226969	[0.015-0.03] unit increase	Affymetrix [321016] (imputed)	N
1269	chr4	89686966	89686967	rs7660516	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	4q22.1	FAM13A	rs7660516-G	NR	1E-8		0.0410091	[0.027-0.055] unit decrease	Affymetrix [319769] (imputed)	N
1269	chr4	89686966	89686967	rs7660516	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	4q22.1	FAM13A	rs7660516-G	NR	1E-8		0.0408179	[0.027-0.055] unit decrease	Affymetrix [319769] (imputed)	N
1269	chr4	89686966	89686967	rs7660516	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	4q22.1	FAM13A	rs7660516-G	NR	2E-8		0.0410299	[0.027-0.055] unit decrease	Affymetrix [321169] (imputed)	N
1269	chr4	89691714	89691714	rs60230748	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	4q22.1	FAM13A	rs60230748-GA	NR	6E-13		0.034875	[0.025-0.044] unit decrease	Affymetrix [319769] (imputed)	N
1269	chr4	89691714	89691714	rs60230748	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	4q22.1	FAM13A	rs60230748-GA	NR	5E-13		0.034997	[0.026-0.044] unit decrease	Affymetrix [319769] (imputed)	N
1269	chr4	89691714	89691714	rs60230748	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	4q22.1	FAM13A	rs60230748-GA	NR	2E-8		0.0273954	[0.018-0.037] unit decrease	Affymetrix [321114] (imputed)	N
1269	chr4	89691714	89691714	rs60230748	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	4q22.1	FAM13A	rs60230748-GA	NR	6E-9		0.0285115	[0.019-0.038] unit decrease	Affymetrix [321169] (imputed)	N
1269	chr4	89704366	89704367	rs13118477	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	4q22.1		rs13118477-G	0.609627	6E-9		0.0231809	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
1269	chr4	89704366	89704367	rs13118477	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	4q22.1		rs13118477-G	0.609628	2E-10		0.0255118	[0.018-0.033] unit decrease	NR [11722792] (imputed)	N
1269	chr4	89704366	89704367	rs13118477	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large HDL	115,082 European ancestry individuals	NA	4q22.1		rs13118477-G	0.609628	1E-8		0.0217413	[0.014-0.029] unit increase	NR [11722792] (imputed)	N
1269	chr4	89704366	89704367	rs13118477	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	4q22.1		rs13118477-G	0.609628	3E-8		0.0206633	[0.013-0.028] unit increase	NR [11722792] (imputed)	N
1269	chr4	89704366	89704367	rs13118477	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large HDL	115,082 European ancestry individuals	NA	4q22.1		rs13118477-G	0.609628	3E-8		0.0211695	[0.014-0.029] unit increase	NR [11722792] (imputed)	N
1269	chr4	89704366	89704367	rs13118477	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	4q22.1		rs13118477-G	0.609628	9E-9		0.0213503	[0.014-0.029] unit increase	NR [11722792] (imputed)	N
1269	chr4	89704366	89704367	rs13118477	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	4q22.1		rs13118477-G	0.609628	7E-9		0.0214979	[0.014-0.029] unit increase	NR [11722792] (imputed)	N
1269	chr4	89704366	89704367	rs13118477	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	4q22.1		rs13118477-G	0.609628	3E-10		0.0238842	[0.016-0.031] unit increase	NR [11722792] (imputed)	N
1269	chr4	89704366	89704367	rs13118477	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	4q22.1		rs13118477-G	0.609628	4E-10		0.0234771	[0.016-0.031] unit increase	NR [11722792] (imputed)	N
1269	chr4	89704366	89704367	rs13118477	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	4q22.1		rs13118477-G	0.609628	7E-12		0.0273323	[0.02-0.035] unit increase	NR [11722792] (imputed)	N
1269	chr4	89704366	89704367	rs13118477	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	4q22.1		rs13118477-G	0.609628	1E-9		0.0231913	[0.016-0.031] unit increase	NR [11722792] (imputed)	N
1269	chr4	89704366	89704367	rs13118477	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	4q22.1		rs13118477-G	0.609628	7E-10		0.0230854	[0.016-0.03] unit increase	NR [11722792] (imputed)	N
1269	chr4	89704366	89704367	rs13118477	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	4q22.1		rs13118477-G	0.609628	2E-8		0.0212133	[0.014-0.029] unit increase	NR [11722792] (imputed)	N
1269	chr4	89706642	89706643	rs987469	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Triglycerides	429,011 European ancestry individuals	NA	4q22.1		rs987469-C	0.54	1E-14		0.015	mmol/L decrease	NR [NR] (imputed)	N
1269	chr4	89706642	89706643	rs987469	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Sex hormone-binding globulin levels	389,354 European ancestry individuals	NA	4q22.1		rs987469-C	0.54	2E-6		0.009	nmol/L increase	NR [NR] (imputed)	N
1269	chr4	89706642	89706643	rs987469	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	4q22.1		rs987469-C	0.54	6E-50				NR [NR] (imputed)	N
1269	chr4	89706642	89706643	rs987469	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	High density lipoprotein cholesterol levels	392,965 European ancestry individuals	NA	4q22.1		rs987469-C	0.54	5E-29		0.02	mmol/L increase	NR [NR] (imputed)	N
1269	chr4	89706642	89706643	rs987469	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	4q22.1		rs987469-C	0.54	6E-17		0.012	% increase	NR [NR] (imputed)	N
1269	chr4	89706642	89706643	rs987469	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Aspartate aminotransferase levels	424,778 European ancestry individuals	NA	4q22.1		rs987469-C	0.54	4E-6		0.009	U/L decrease	NR [NR] (imputed)	N
1269	chr4	89706921	89706922	rs6847567	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs6847567-T	0.063	3E-6		0.089	NR unit decrease	Illumina [NR] (imputed)	N
1269	chr4	89708849	89708850	rs11725153	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	4q22.1	FAM13A	rs11725153-G	NR	2E-12		0.0225744	[0.016-0.029] unit decrease	Affymetrix [319769] (imputed)	N
1269	chr4	89708849	89708850	rs11725153	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	4q22.1	FAM13A	rs11725153-G	NR	1E-12		0.0227246	[0.016-0.029] unit decrease	Affymetrix [319769] (imputed)	N
1269	chr4	89708849	89708850	rs11725153	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid respiratory support vs population)	495 European ancestry cases, 680,440 European ancestry controls, 102 Hispanic or Latin American cases, 94,330 Hispanic or Latin American controls, 39 Black or African American cases, 22,410 Black or African American controls	NA	4q22.1		rs11725153-?	NR	7E-6		0.3024595	[0.17-0.43] unit increase	Illumina [9842460] (imputed)	N
1269	chr4	89709907	89709908	rs3822076	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	4q22.1	FAM13A	rs3822076-A	NR	1E-27		0.0320768	[0.026-0.038] unit decrease	Affymetrix [321788] (imputed)	N
1269	chr4	89710788	89710789	rs6825776	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	4q22.1		rs6825776-A	0.628924	2E-8		0.0232109	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
1269	chr4	89710788	89710789	rs6825776	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	4q22.1		rs6825776-A	0.628924	4E-11		0.0269125	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
1269	chr4	89710788	89710789	rs6825776	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	4q22.1	FAM13A	rs6825776-T	NR	2E-14		0.0222621	[0.017-0.028] unit decrease	Affymetrix [321016] (imputed)	N
1269	chr4	89712157	89712158	rs1377291	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	4q22.1	FAM13A	rs1377291-T	NR	6E-11		0.0357154	[0.025-0.046] unit decrease	Affymetrix [319769] (imputed)	N
1269	chr4	89712157	89712158	rs1377291	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	4q22.1	FAM13A	rs1377291-T	NR	3E-10		0.0345703	[0.024-0.045] unit decrease	Affymetrix [319769] (imputed)	N
1269	chr4	89713120	89713121	rs9991328	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	4q22.1	NR	rs9991328-C	0.4796	2E-9		0.0227	[0.015-0.03] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1269	chr4	89713120	89713121	rs9991328	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	4q22.1	NR	rs9991328-T	0.4737	1E-51		0.0259	[0.023-0.029] unit increase	NR [~ 27400000] (imputed)	N
1269	chr4	89713120	89713121	rs9991328	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	4q22.1	NR	rs9991328-T	0.4738	5E-28		0.0185	[0.015-0.022] unit increase	NR [~ 27400000] (imputed)	N
1269	chr4	89713120	89713121	rs9991328	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	4q22.1	NR	rs9991328-C	NR	6E-9		0.022	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1269	chr4	89713120	89713121	rs9991328	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	4q22.1	NR	rs9991328-C	0.518	4E-9	(EA)	0.025	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1269	chr4	89713120	89713121	rs9991328	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	4q22.1	NR	rs9991328-C	NR	4E-13		0.025	unit increase	Affymetrix [at least 7091467] (imputed)	N
1269	chr4	89713120	89713121	rs9991328	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	4q22.1	NR	rs9991328-C	0.518	2E-12	(EA)	0.027	unit increase	Affymetrix [at least 7091467] (imputed)	N
1269	chr4	89713120	89713121	rs9991328	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI in non-smokers	75,379 European ancestry women, 45,811 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	4q22.1	FAM13A	rs9991328-T	0.498	7E-6		0.0126	[0.0071-0.0181] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1269	chr4	89713120	89713121	rs9991328	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI in non-smokers	75,379 European ancestry women, 45,811 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	4q22.1	FAM13A	rs9991328-T	0.498	1E-6	(women)	0.0164	[0.0097-0.0231] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1269	chr4	89713120	89713121	rs9991328	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (joint analysis main effects and smoking interaction)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	4q22.1	FAM13A	rs9991328-T	0.498	1E-7	(women)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1269	chr4	89713120	89713121	rs9991328	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	4q22.1	FAM13A	rs9991328-T	0.498	5E-9		0.0217	[0.014-0.029] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1269	chr4	89713120	89713121	rs9991328	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	4q22.1	FAM13A	rs9991328-T	0.498	3E-13	(women)	0.0373	[0.027-0.047] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1269	chr4	89713120	89713121	rs9991328	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex x age interaction (4df test)	up to 43,776 European ancestry men aged <50, up to 50,526 European ancestry women aged <50, up to 69,944 European ancestry men aged >50, up to 88,129 European ancestry women aged >50	NA	4q22.1	FAM13A, HERC6, HERC5, PIGY, PYURF, HERC3, NAP1L5, FAM13A-AS1, TIGD2, GPRIN3	rs9991328-T	0.49	2E-8				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1269	chr4	89713120	89713121	rs9991328	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI (age <50)	up to 43,776 European ancestry men, up to 50,526 European ancestry women	NA	4q22.1	FAM13A, HERC6, HERC5, PIGY, PYURF, HERC3, NAP1L5, FAM13A-AS1, TIGD2, GPRIN3	rs9991328-T	0.49	2E-6	(women)	0.034	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1269	chr4	89713120	89713121	rs9991328	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	4q22.1	FAM13A, HERC6, HERC5, PIGY, PYURF, HERC3, NAP1L5, FAM13A-AS1, TIGD2, GPRIN3	rs9991328-T	0.485313	5E-8		0.0229	units increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1269	chr4	89713120	89713121	rs9991328	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	4q22.1	FAM13A	rs9991328-T	0.4956	5E-10		0.0203	[0.014-0.027] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1269	chr4	89713120	89713121	rs9991328	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	4q22.1	FAM13A	rs9991328-T	0.4912	3E-11	(women)	0.029	[0.02-0.038] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1269	chr4	89713120	89713121	rs9991328	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	4q22.1	FAM13A	rs9991328-T	0.4882	4E-8	(EA)	0.0185	[0.012-0.025] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1269	chr4	89713120	89713121	rs9991328	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	4q22.1	FAM13A	rs9991328-T	0.4851	3E-10	(EA, women)	0.028	[0.019-0.037] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1269	chr4	89717297	89717298	rs77140172	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs77140172-A	0.064	3E-6		0.09	NR unit decrease	Illumina [NR] (imputed)	N
1269	chr4	89718312	89718313	rs112542013	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs112542013-T	0.063	3E-6		0.089	NR unit decrease	Illumina [NR] (imputed)	N
1269	chr4	89718377	89718378	rs75621874	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs75621874-A	0.937	3E-6		0.089	NR unit increase	Illumina [NR] (imputed)	N
1269	chr4	89719367	89719368	rs1377290	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	4q22.1	NR	rs1377290-T	NR	7E-13		0.0171	[0.012-0.022] unit increase	Affymetrix [9000000] (imputed)	N
1269	chr4	89719367	89719368	rs1377290	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	4q22.1	NR	rs1377290-T	NR	2E-21		0.0237	[0.019-0.029] unit decrease	Affymetrix [9000000] (imputed)	N
1269	chr4	89719367	89719368	rs1377290	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	4q22.1	NR	rs1377290-T	NR	4E-9		0.0147	[0.0098-0.0196] unit decrease	Affymetrix [9000000] (imputed)	N
1269	chr4	89721331	89721332	rs2869948	28430825	Ng MCY	2017-04-21	PLoS Genet	Discovery and fine-mapping of adiposity loci using high density imputation of genome-wide association studies in individuals of African ancestry: African Ancestry Anthropometry Genetics Consortium.	Waist-to-hip ratio adjusted for body mass index	4,783 African American men, 15,601 African American women	981 African American men, 1,730 African American women, 104,079 European ancestry men, 116,742 European ancestry women	4q22.1	FAM13A	rs2869948-C	0.5315	1E-6	(AA, Women)	0.057	[0.033-0.081] unit increase	Affymetrix, Illumina [20502658] (imputed)	N
1269	chr4	89722499	89722500	rs74811486	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs74811486-T	0.064	3E-6		0.09	NR unit decrease	Illumina [NR] (imputed)	N
1269	chr4	89723064	89723065	rs6824451	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	4q22.1	FAM13A	rs6824451-G	0.535928	1E-25		0.0200543	[0.016-0.024] unit increase	Affymetrix [NR] (imputed)	N
1269	chr4	89724235	89724236	rs17014580	31786426	Farias Tempaku P	2019-08-14	Sleep Med	Genome-wide association study reveals two novel risk alleles for incident obstructive sleep apnea in the EPISONO cohort.	Obstructive sleep apnea trait (apnea hypopnea index, change over time)	404 European ancestry individuals, 97 Black individuals, 20 Asian ancestry individuals, 20 Indigenous individuals, 138 mixed race individuals, 27 individuals	NA	4q22.1	NR	rs17014580-C	0.059	2E-6		0.2398	[0.14-0.34] unit increase	Illumina [up to 730525]	N
1269	chr4	89725055	89725056	rs10012624	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	4q22.1	FAM13A	rs10012624-C	0.53677	9E-12		0.0134354	[0.0096-0.0173] unit increase	Affymetrix [NR] (imputed)	N
1269	chr4	89725504	89725505	rs75581102	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs75581102-A	0.064	3E-6		0.091	NR unit decrease	Illumina [NR] (imputed)	N
1269	chr4	89726823	89726823	rs34154818	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	4q22.1	FAM13A	rs34154818-AT	NR	9E-23		0.0280547	[0.022-0.034] unit decrease	Affymetrix [321016] (imputed)	N
1269	chr4	89726823	89726823	rs34154818	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	4q22.1	NR	rs34154818-A	0.550762	7E-14		0.00645585	[0.0048-0.0081] unit increase	Affymetrix [16582909] (imputed)	N
1269	chr4	89726823	89726823	rs34154818	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	4q22.1	NR	rs34154818-A	0.550758	1E-17		0.0106036	[0.0082-0.0131] unit increase	Affymetrix [16585854] (imputed)	N
1269	chr4	89726823	89726823	rs34154818	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	4q22.1	NR	rs34154818-A	0.550762	3E-7		0.00487455	[0.003-0.0067] unit increase	Affymetrix [16582965] (imputed)	N
1269	chr4	89726823	89726823	rs34154818	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	4q22.1	NR	rs34154818-A	0.550758	1E-10		0.00910338	[0.0063-0.0119] unit increase	Affymetrix [16585866] (imputed)	N
1269	chr4	89730073	89730074	rs2167750	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	4q22.1		rs2167750-T	NR	3E-12		0.0143	[0.01-0.018] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
1269	chr4	89730073	89730074	rs2167750	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	4q22.1		rs2167750-T	NR	4E-21		0.0196	[0.015-0.024] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
1269	chr4	89730073	89730074	rs2167750	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	4q22.1	FAM13A	rs2167750-T	NR	4E-55		0.0442147	[0.039-0.05] unit increase	Affymetrix [319769] (imputed)	N
1269	chr4	89730073	89730074	rs2167750	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	4q22.1	FAM13A	rs2167750-T	NR	3E-54		0.0439052	[0.038-0.049] unit increase	Affymetrix [319769] (imputed)	N
1269	chr4	89730073	89730074	rs2167750	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	4q22.1	FAM13A	rs2167750-T	NR	4E-25		0.0295276	[0.024-0.035] unit increase	Affymetrix [321114] (imputed)	N
1269	chr4	89730073	89730074	rs2167750	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	4q22.1	FAM13A	rs2167750-T	NR	1E-26		0.0305779	[0.025-0.036] unit increase	Affymetrix [321169] (imputed)	N
1269	chr4	89730073	89730074	rs2167750	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	4q22.1	NR	rs2167750-?	NR	9E-44				Affymetrix [~ 8270000] (imputed)	N
1269	chr4	89730073	89730074	rs2167750	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	4q22.1	NR	rs2167750-?	NR	1E-13				Affymetrix [~ 8270000] (imputed)	N
1269	chr4	89730073	89730074	rs2167750	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	4q22.1		rs2167750-?	NR	1E-41				NR [~ 8900000] (imputed)	N
1269	chr4	89730073	89730074	rs2167750	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	4q22.1	NR	rs2167750-T	0.47	6E-49		0.027	[0.023-0.031] unit increase	Affymetrix [2446094] (imputed)	N
1269	chr4	89730073	89730074	rs2167750	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	4q22.1	NR	rs2167750-T	0.47	5E-8				Affymetrix [2446094] (imputed)	N
1269	chr4	89730073	89730074	rs2167750	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	4q22.1	NA	rs2167750-T	0.4729	6E-29		0.0199	[0.016-0.023] unit increase	NR [~ 27400000] (imputed)	N
1269	chr4	89730402	89730403	rs74684746	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	4q22.1	FAM13A	rs74684746-A	NR	1E-8		0.0331787	[0.022-0.045] unit increase	Affymetrix [319769] (imputed)	N
1269	chr4	89730402	89730403	rs74684746	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	4q22.1	FAM13A	rs74684746-A	NR	1E-8		0.0332085	[0.022-0.045] unit increase	Affymetrix [319769] (imputed)	N
1269	chr4	89732875	89732876	rs7697644	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q22.1	NR	rs7697644-G	0.518541	9E-14				Affymetrix, Illumina [24332387] (imputed)	N
1269	chr4	89737456	89737457	rs7694958	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	4q22.1	NR	rs7694958-T	0.467765	3E-19		0.016524	[0.013-0.02] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
1269	chr4	89737456	89737457	rs7694958	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	4q22.1	NR	rs7694958-T	0.467815	1E-15		0.014784	[0.011-0.018] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
1269	chr4	89737557	89737558	rs7695177	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q22.1	NR	rs7695177-G	0.515437	2E-19				Affymetrix, Illumina [24653286] (imputed)	N
1269	chr4	89737557	89737558	rs7695177	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q22.1	NR	rs7695177-G	0.513694	6E-17				Affymetrix, Illumina [24558453] (imputed)	N
1269	chr4	89739807	89739808	rs3775380	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting insulin	151,013 European ancestry individuals	NA	4q22.1	FAM13A	rs3775380-A	0.5048	1E-11		0.0119	[0.0084-0.0154] unit decrease	Affymetrix, Illumina [32635793] (imputed)	N
1269	chr4	89740127	89740128	rs13133548	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	4q22.1	FAM13A	rs13133548-A	NR	2E-8		0.0180395	[0.012-0.024] unit decrease	Affymetrix [323858] (imputed)	N
1269	chr4	89740127	89740128	rs13133548	31178129	Spracklen CN	2019-06-06	Am J Hum Genet	Exome-Derived Adiponectin-Associated Variants Implicate Obesity and Lipid Biology.	Adiponectin levels	up to 60,465 European ancestry individuals, up to 2,568 East Asian ancestry individuals, up to 3,271 African American individuals, up to 1,435 Hispanic individuals	NA	4q22.1	FAM13A	rs13133548-A	0.48896809724088	4E-10		0.03493831	unit decrease	Illumina [265780]	N
1269	chr4	89740127	89740128	rs13133548	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	4q22.1	FAM13A	rs13133548-A	0.4745	2E-16		0.0216	[0.017-0.027] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1269	chr4	89740893	89740894	rs1903002	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	4q22.1	FAM13A	rs1903002-G	0.5005	3E-8		1.04	[1.02-1.05]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1269	chr4	89741268	89741269	rs3822072	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body fat percentage and triglycerides (pairwise)	268,505 European ancestry individuals, 10,072 East Asian, South Asian and African American ancestry individuals	NA	4q22.1	FAM13A	rs3822072-G	0.5209	1E-10				Affymetrix, Illumina [2331072] (imputed)	N
1269	chr4	89741268	89741269	rs3822072	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body fat percentage and HDL-C (pairwise)	277,811 European ancestry individuals, 10,022 East Asian, South Asian and African American ancestry individuals	NA	4q22.1	FAM13A	rs3822072-G	0.5209	8E-16				Affymetrix, Illumina [2331072] (imputed)	N
1269	chr4	89741268	89741269	rs3822072	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	4q22.1	FAM13A	rs3822072-G	0.548781	5E-14		0.0150742	[0.011-0.019] unit decrease	Affymetrix [NR] (imputed)	N
1269	chr4	89741268	89741269	rs3822072	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	4q22.1	FAM13A	rs3822072-?	NR	2E-10		0.0167	[0.012-0.021] unit increase	Affymetrix [5701386] (imputed)	N
1269	chr4	89741268	89741269	rs3822072	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	4q22.1	NR	rs3822072-G	NR	3E-9		0.023	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1269	chr4	89741268	89741269	rs3822072	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	4q22.1	NR	rs3822072-G	0.528	2E-9	(EA)	0.025	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1269	chr4	89741268	89741269	rs3822072	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	4q22.1	NR	rs3822072-G	NR	3E-12		0.024	unit increase	Affymetrix [at least 7091467] (imputed)	N
1269	chr4	89741268	89741269	rs3822072	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	4q22.1	NR	rs3822072-G	0.528	9E-12	(EA)	0.026	unit increase	Affymetrix [at least 7091467] (imputed)	N
1269	chr4	89741268	89741269	rs3822072	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	HDL cholesterol levels	34,930 East Asian ancestry individuals, 187,167 European ancestry individuals	8,741 Chinese ancestry individuals	4q22.1	FAM13A	rs3822072-A	0.488	7E-11	(Trans-ethnic initial)	0.0251	[0.018-0.032] unit decrease (EA Beta values)	Affymetrix, Illumina [~ 1900000] (imputed)	N
1269	chr4	89741268	89741269	rs3822072	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	4q22.1	FAM13A	rs3822072-A	0.46	4E-12		0.025	[NR] unit decrease	NR [NR] (imputed)	N
1269	chr4	89742243	89742244	rs28418580	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	4q22.1	FAM13A	rs28418580-T	0.461651	2E-11		0.015041347	[0.011-0.019] unit increase	Affymetrix [93095623] (imputed)	N
1269	chr4	89742243	89742244	rs28418580	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	4q22.1	FAM13A	rs28418580-T	0.461673	1E-9		0.013503854	[0.0091-0.0179] unit increase	Affymetrix [93095623] (imputed)	N
1269	chr4	89743581	89743582	rs3775375	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Pulse pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	4q22.1	chr4mb89	rs3775375-T	0.443049502	3E-6		0.1678	[0.098-0.238] unit decrease	Affymetrix [~ 9800000] (imputed)	N
1269	chr4	89743820	89743821	rs3775373	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	4q22.1	FAM13A	rs3775373-T	NR	2E-12		0.0249078	[0.018-0.032] unit decrease	Affymetrix [319769] (imputed)	N
1269	chr4	89743820	89743821	rs3775373	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	4q22.1	FAM13A	rs3775373-T	NR	1E-12		0.0252373	[0.018-0.032] unit decrease	Affymetrix [319769] (imputed)	N
1269	chr4	89743820	89743821	rs3775373	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	4q22.1	FAM13A	rs3775373-T	NR	6E-9		0.0208116	[0.014-0.028] unit decrease	Affymetrix [321114] (imputed)	N
1269	chr4	89743820	89743821	rs3775373	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	4q22.1	FAM13A	rs3775373-T	NR	1E-9		0.0217537	[0.015-0.029] unit decrease	Affymetrix [321169] (imputed)	N
1269	chr4	89747393	89747394	rs71609539	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	4q22.1	FAM13A	rs71609539-C	NR	9E-12		0.0225572	[0.016-0.029] unit decrease	Affymetrix [319769] (imputed)	N
1269	chr4	89747393	89747394	rs71609539	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	4q22.1	FAM13A	rs71609539-C	NR	4E-12		0.0229162	[0.016-0.029] unit decrease	Affymetrix [319769] (imputed)	N
1269	chr4	89747393	89747394	rs71609539	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	4q22.1	FAM13A	rs71609539-C	NR	9E-9		0.0191935	[0.013-0.026] unit decrease	Affymetrix [321114] (imputed)	N
1269	chr4	89747393	89747394	rs71609539	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	4q22.1	FAM13A	rs71609539-C	NR	3E-9		0.0198451	[0.013-0.026] unit decrease	Affymetrix [321169] (imputed)	N
1269	chr4	89750104	89750105	rs13115763	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Sunburns	approximately 344,000 European ancestry individuals	NA	4q22.1		rs13115763-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1269	chr4	89750360	89750361	rs10021465	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs10021465-A	0.552	2E-7		0.01	unit increase	Illumina [NR] (imputed)	N
1269	chr4	89750360	89750361	rs10021465	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs10021465-A	0.552	1E-6		0.044	NR unit increase	Illumina [NR] (imputed)	N
1269	chr4	89751857	89751858	rs7660000	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	4q22.1	NR	rs7660000-C	0.7131	1E-9		0.0309	[0.021-0.041] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1269	chr4	89752275	89752276	rs57400569	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	4q22.1		rs57400569-A	NR	1E-8		0.0119	[0.0078-0.016] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
1269	chr4	89752275	89752276	rs57400569	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	23,963 European ancestry cases, 306,942 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	43,254 European ancestry cases, 1,471,118 European ancestry controls	4q22.1	FAM13A	rs57400569-A	NR	2E-8		0.0479	unit decrease	Illumina [15409056] (imputed)	N
1269	chr4	89752275	89752276	rs57400569	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	4q22.1		rs57400569-?	NR	2E-14				NR [~ 8900000] (imputed)	N
1269	chr4	89752275	89752276	rs57400569	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	4q22.1	FAM13A	rs57400569-A	0.2134	4E-8		0.2174	[0.14-0.3] mmHg decrease	Affymetrix [NR] (imputed)	N
1269	chr4	89752275	89752276	rs57400569	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	4q22.1	FAM13A	rs57400569-G		7E-8		0.244	unit increase	Affymetrix [at least 2696785] (imputed)	N
1269	chr4	89752275	89752276	rs57400569	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	4q22.1	FAM13A	rs57400569-G		1E-11		0.204	unit increase	Affymetrix [at least 2696785] (imputed)	N
1269	chr4	89753037	89753037	rs148605293	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	4q22.1	FAM13A	rs148605293-AT	NR	6E-13		0.0216112	[0.016-0.027] unit increase	Affymetrix [319769] (imputed)	N
1269	chr4	89753037	89753037	rs148605293	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	4q22.1	FAM13A	rs148605293-AT	NR	5E-13		0.0216991	[0.016-0.028] unit increase	Affymetrix [319769] (imputed)	N
1269	chr4	89756392	89756393	rs60955950	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	4q22.1	NR	rs60955950-G		2E-10		0.08	[0.06-0.1] unit increase	NR [NR]	N
1269	chr4	89757081	89757082	rs59473955	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	4q22.1	FAM13A, TIGD2	rs59473955-?		6E-33				Affymetrix, Illumina [NR] (imputed)	N
1269	chr4	89758523	89758524	rs72872126	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	4q22.1	NR	rs72872126-?	NR	5E-12				Affymetrix [~ 8270000] (imputed)	N
1269	chr4	89759733	89759734	rs10011267	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Myopia (age of diagnosis)	104,293 European ancestry individuals	NA	4q22.1	NR	rs10011267-T	0.2432	8E-9		0.0481	[0.032-0.064] unit increase	Illumina [~ 10600000] (imputed)	N
1269	chr4	89765660	89765661	rs7682431	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	4q22.1	FAM13A	rs7682431-C	NR	4E-8		0.0166228	[0.011-0.023] unit increase	Affymetrix [321114] (imputed)	N
1269	chr4	89765660	89765661	rs7682431	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	4q22.1	FAM13A	rs7682431-C	NR	1E-8		0.0173189	[0.011-0.023] unit increase	Affymetrix [321169] (imputed)	N
1269	chr4	89765660	89765661	rs7682431	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs7682431-C	0.372	2E-7		0.01	unit decrease	Illumina [NR] (imputed)	N
1269	chr4	89765660	89765661	rs7682431	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs7682431-C	0.37	6E-7		0.045	NR unit decrease	Illumina [NR] (imputed)	N
1269	chr4	89768820	89768821	rs28514678	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	4q22.1	FAM13A	rs28514678-T	NR	1E-23		0.0332992	[0.027-0.04] unit decrease	Affymetrix [319769] (imputed)	N
1269	chr4	89768820	89768821	rs28514678	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	4q22.1	FAM13A	rs28514678-T	NR	6E-24		0.0335603	[0.027-0.04] unit decrease	Affymetrix [319769] (imputed)	N
1269	chr4	89768820	89768821	rs28514678	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	4q22.1	FAM13A	rs28514678-T	NR	2E-15		0.0265958	[0.02-0.033] unit decrease	Affymetrix [321114] (imputed)	N
1269	chr4	89768820	89768821	rs28514678	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	4q22.1	FAM13A	rs28514678-T	NR	1E-16		0.0277958	[0.021-0.034] unit decrease	Affymetrix [321169] (imputed)	N
1269	chr4	89768882	89768883	rs28400320	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	4q22.1	FAM13A	rs28400320-T	NR	2E-8		0.0405465	[0.026-0.055] unit decrease	Affymetrix [319769] (imputed)	N
1269	chr4	89768882	89768883	rs28400320	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	4q22.1	FAM13A	rs28400320-T	NR	2E-8		0.0408825	[0.027-0.055] unit decrease	Affymetrix [319769] (imputed)	N
1269	chr4	89768882	89768883	rs28400320	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	4q22.1	NR	rs28400320-?	NR	5E-8				Affymetrix [~ 8270000] (imputed)	N
1269	chr4	89770908	89770909	rs28455964	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs28455964-T	0.619	2E-8		0.01	unit increase	Illumina [NR] (imputed)	N
1269	chr4	89770908	89770909	rs28455964	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs28455964-T	0.621	1E-7		0.047	NR unit increase	Illumina [NR] (imputed)	N
1269	chr4	89777080	89777081	rs6830970	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs6830970-A	0.378	8E-8		0.01	unit increase	Illumina [NR] (imputed)	N
1269	chr4	89777080	89777081	rs6830970	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs6830970-A	0.377	4E-7		0.045	NR unit increase	Illumina [NR] (imputed)	N
1269	chr4	89777617	89777618	rs77033326	31164008	Mullins N	2019-06-05	Am J Psychiatry	GWAS of Suicide Attempt in Psychiatric Disorders and Association With Major Depression Polygenic Risk Scores.	Suicide attempts in major depressive disorder	1,622 European ancestry attempters, 8,786 European ancestry nonattempters	NA	4q22.1	NR	rs77033326-A	0.02	2E-7		2.24	1.65-3.03	NR [8482392] (imputed)	N
1269	chr4	89779908	89779909	rs2085600	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	4q22.1	NR	rs2085600-A	0.177602	2E-13		0.017731	[0.013-0.022] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1270	chr4	89786281	89786282	rs28459962	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs28459962-T	0.741	4E-6		0.046	NR unit increase	Illumina [NR] (imputed)	N
1270	chr4	89787301	89787302	rs7663772	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	4q22.1		rs7663772-?	NR	6E-9				NR [~ 8900000] (imputed)	N
1270	chr4	89791074	89791075	rs17815912	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	4q22.1	FAM13A	rs17815912-G	NR	2E-8		0.0229798	[0.015-0.031] unit increase	Affymetrix [319769] (imputed)	N
1270	chr4	89791074	89791075	rs17815912	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	4q22.1	FAM13A	rs17815912-G	NR	8E-9		0.0236213	[0.016-0.032] unit increase	Affymetrix [319769] (imputed)	N
1270	chr4	89793558	89793559	rs4693971	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs4693971-T	0.261	5E-6		0.046	NR unit decrease	Illumina [NR] (imputed)	N
1270	chr4	89795608	89795609	rs28767574	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	4q22.1		rs28767574-T	NR	8E-9		0.013	[0.0085-0.0175] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1270	chr4	89795862	89795863	rs142866806	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	4q22.1	FAM13A	rs142866806-T	NR	4E-8		0.0227898	[0.015-0.031] unit increase	Affymetrix [321114] (imputed)	N
1270	chr4	89796153	89796154	rs74710229	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	4q22.1	FAM13A	rs74710229-C	0.174649	8E-12		0.019957874	[0.014-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1270	chr4	89796153	89796154	rs74710229	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	4q22.1		rs74710229-?	NR	1E-11				NR [~ 8900000] (imputed)	N
1270	chr4	89796710	89796711	rs150775800	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Insular cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	4q22.1	FAM13A	rs150775800-?		4E-6				Illumina [4322238] (imputed)	N
1270	chr4	89797666	89797667	rs4693973	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs4693973-A	0.267	3E-6		0.01	unit decrease	Illumina [NR] (imputed)	N
1270	chr4	89797666	89797667	rs4693973	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs4693973-A	0.264	1E-6		0.049	NR unit decrease	Illumina [NR] (imputed)	N
1270	chr4	89798891	89798892	rs17815990	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	4q22.1	FAM13A	rs17815990-C	NR	2E-8		0.017097	[0.011-0.023] unit increase	Affymetrix [321114] (imputed)	N
1270	chr4	89799205	89799206	rs12648534	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs12648534-T	0.298	3E-7		0.01	unit decrease	Illumina [NR] (imputed)	N
1270	chr4	89799205	89799206	rs12648534	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs12648534-T	0.296	5E-7		0.048	NR unit decrease	Illumina [NR] (imputed)	N
1270	chr4	89799522	89799523	rs13106968	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	4q22.1	FAM13A	rs13106968-T	NR	4E-8		0.0191891	[0.012-0.026] unit decrease	Affymetrix [319769] (imputed)	N
1270	chr4	89801302	89801303	rs62308745	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs62308745-T	0.698	4E-7		0.01	unit increase	Illumina [NR] (imputed)	N
1270	chr4	89801302	89801303	rs62308745	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs62308745-T	0.7	6E-7		0.048	NR unit increase	Illumina [NR] (imputed)	N
1270	chr4	89803694	89803695	rs78366141	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs78366141-A	0.096	5E-6		0.016	unit decrease	Illumina [NR] (imputed)	N
1270	chr4	89803694	89803695	rs78366141	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs78366141-A	0.096	5E-6		0.078	NR unit decrease	Illumina [NR] (imputed)	N
1270	chr4	89805968	89805969	rs62308746	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs62308746-T	0.7	1E-7		0.01	unit increase	Illumina [NR] (imputed)	N
1270	chr4	89805968	89805969	rs62308746	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs62308746-T	0.702	3E-7		0.049	NR unit increase	Illumina [NR] (imputed)	N
1270	chr4	89806783	89806784	rs7687539	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs7687539-A	0.3	1E-7		0.01	unit decrease	Illumina [NR] (imputed)	N
1270	chr4	89806783	89806784	rs7687539	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs7687539-A	0.298	3E-7		0.049	NR unit decrease	Illumina [NR] (imputed)	N
1270	chr4	89808738	89808739	rs10033824	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs10033824-T	0.744	2E-6		0.01	unit increase	Illumina [NR] (imputed)	N
1270	chr4	89808738	89808739	rs10033824	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs10033824-T	0.746	2E-6		0.048	NR unit increase	Illumina [NR] (imputed)	N
1270	chr4	89809872	89809873	rs13328032	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs13328032-A	0.311	8E-7		0.01	unit decrease	Illumina [NR] (imputed)	N
1270	chr4	89809872	89809873	rs13328032	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs13328032-A	0.31	2E-6		0.046	NR unit decrease	Illumina [NR] (imputed)	N
1270	chr4	89810394	89810395	rs4693974	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	4q22.1	FAM13A	rs4693974-A	NR	1E-16		0.02371	[0.018-0.029] unit decrease	Affymetrix [319769] (imputed)	N
1270	chr4	89810394	89810395	rs4693974	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	4q22.1	FAM13A	rs4693974-A	NR	8E-17		0.023806	[0.018-0.029] unit decrease	Affymetrix [319769] (imputed)	N
1270	chr4	89810394	89810395	rs4693974	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	4q22.1	FAM13A	rs4693974-A	NR	4E-10		0.0180128	[0.012-0.024] unit decrease	Affymetrix [321114] (imputed)	N
1270	chr4	89810394	89810395	rs4693974	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	4q22.1	FAM13A	rs4693974-A	NR	2E-10		0.0183269	[0.013-0.024] unit decrease	Affymetrix [321169] (imputed)	N
1270	chr4	89810394	89810395	rs4693974	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	4q22.1	NR	rs4693974-?	NR	2E-14				Affymetrix [~ 8270000] (imputed)	N
1270	chr4	89810394	89810395	rs4693974	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	4q22.1	NR	rs4693974-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
1270	chr4	89810394	89810395	rs4693974	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs4693974-A	0.428	4E-6		0.008	unit increase	Illumina [NR] (imputed)	N
1270	chr4	89810394	89810395	rs4693974	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs4693974-A	0.427	1E-6		0.042	NR unit increase	Illumina [NR] (imputed)	N
1270	chr4	89810955	89810956	rs58281712	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs58281712-C	0.302	1E-7		0.01	unit decrease	Illumina [NR] (imputed)	N
1270	chr4	89810955	89810956	rs58281712	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs58281712-C	0.299	2E-7		0.05	NR unit decrease	Illumina [NR] (imputed)	N
1270	chr4	89811194	89811195	rs2609255	23583980	Fingerlin TE	2013-04-14	Nat Genet	Genome-wide association study identifies multiple susceptibility loci for pulmonary fibrosis.	Interstitial lung disease	1,161 European ancestry cases, 4,683 European ancestry controls	876 European ancestry cases, 1,890 European ancestry controls	4q22.1	FAM13A	rs2609255-G	0.21	2E-11		1.29	[1.18-1.42]	Illumina [439828]	N
1270	chr4	89815694	89815695	rs13110699	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	4q22.1	NR	rs13110699-T	0.18	4E-10			[NR]	Affymetrix [9886854] (imputed)	N
1270	chr4	89815694	89815695	rs13110699	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	4q22.1	NR	rs13110699-T	0.18	7E-6		0.93	[0.9-0.96]	Affymetrix [9886854] (imputed)	N
1270	chr4	89815694	89815695	rs13110699	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	4q22.1	NR	rs13110699-T	0.18	4E-11			[NR]	Affymetrix [9886854] (imputed)	N
1270	chr4	89815694	89815695	rs13110699	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in non-current smokers	16,488 European ancestry cases, 169,688 European ancestry controls	NA	4q22.1	NR	rs13110699-T	0.18	7E-6		0.93	[0.9-0.96]	Affymetrix [9886854] (imputed)	N
1270	chr4	89815694	89815695	rs13110699	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in ever smokers	12,446 European ancestry cases, 59,145 European ancestry controls	NA	4q22.1	NR	rs13110699-T	0.18	6E-10		0.88	[0.85-0.92]	Affymetrix [9886854] (imputed)	N
1270	chr4	89815694	89815695	rs13110699	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in current smokers	4,589 European ancestry cases, 10,001 European ancestry controls	NA	4q22.1	NR	rs13110699-T	0.18	2E-8		0.81	[0.75-0.87]	Affymetrix [9886854] (imputed)	N
1270	chr4	89815694	89815695	rs13110699	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FEV1/FVC)	48,943 European ancestry individuals	57,176 European ancestry individuals, 38,199 individuals.	4q22.1	FAM13A	rs13110699-G	0.82	8E-15	(conditioned on rs2045517)	0.038	[0.028-0.048] unit decrease	Affymetrix [27624732] (imputed)	N
1270	chr4	89819306	89819307	rs7668636	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs7668636-T	0.696	1E-7		0.01	unit increase	Illumina [NR] (imputed)	N
1270	chr4	89819306	89819307	rs7668636	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs7668636-T	0.7	3E-7		0.049	NR unit increase	Illumina [NR] (imputed)	N
1270	chr4	89819323	89819324	rs7690839	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs7690839-A	0.573	5E-6		0.008	unit decrease	Illumina [NR] (imputed)	N
1270	chr4	89819323	89819324	rs7690839	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs7690839-A	0.574	2E-6		0.041	NR unit decrease	Illumina [NR] (imputed)	N
1270	chr4	89820789	89820790	rs28529050	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs28529050-A	0.697	1E-7		0.01	unit increase	Illumina [NR] (imputed)	N
1270	chr4	89820789	89820790	rs28529050	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs28529050-A	0.7	3E-7		0.049	NR unit increase	Illumina [NR] (imputed)	N
1270	chr4	89821883	89821884	rs4693975	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs4693975-T	0.303	1E-7		0.01	unit decrease	Illumina [NR] (imputed)	N
1270	chr4	89821883	89821884	rs4693975	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs4693975-T	0.3	3E-7		0.049	NR unit decrease	Illumina [NR] (imputed)	N
1270	chr4	89825614	89825615	rs4505789	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs4505789-A	0.559	3E-6		0.008	unit decrease	Illumina [NR] (imputed)	N
1270	chr4	89825614	89825615	rs4505789	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs4505789-A	0.561	5E-6		0.039	NR unit decrease	Illumina [NR] (imputed)	N
1270	chr4	89828352	89828352	rs35379418	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	4q22.1	FAM13A	rs35379418-TG	NR	4E-8		0.0190347	[0.012-0.026] unit decrease	Affymetrix [319769] (imputed)	N
1270	chr4	89828543	89828544	rs79524934	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	4q22.1	FAM13A	rs79524934-T	NR	5E-9		0.0320046	[0.021-0.043] unit increase	Affymetrix [319769] (imputed)	N
1270	chr4	89828543	89828544	rs79524934	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	4q22.1	FAM13A	rs79524934-T	NR	3E-9		0.0325434	[0.022-0.043] unit increase	Affymetrix [319769] (imputed)	N
1270	chr4	89832327	89832328	rs62310476	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs62310476-A	0.303	1E-7		0.01	unit decrease	Illumina [NR] (imputed)	N
1270	chr4	89832327	89832328	rs62310476	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs62310476-A	0.3	3E-7		0.049	NR unit decrease	Illumina [NR] (imputed)	N
1270	chr4	89832531	89832532	rs10019681	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs10019681-T	0.722	2E-7		0.01	unit decrease	Illumina [NR] (imputed)	N
1270	chr4	89832531	89832532	rs10019681	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs10019681-T	0.724	5E-7		0.048	NR unit decrease	Illumina [NR] (imputed)	N
1270	chr4	89832790	89832791	rs7695732	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs7695732-C	0.303	1E-7		0.01	unit decrease	Illumina [NR] (imputed)	N
1270	chr4	89832790	89832791	rs7695732	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs7695732-C	0.3	3E-7		0.049	NR unit decrease	Illumina [NR] (imputed)	N
1270	chr4	89839839	89839840	rs4693976	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs4693976-T	0.425	9E-8		0.01	unit increase	Illumina [NR] (imputed)	N
1270	chr4	89839839	89839840	rs4693976	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs4693976-T	0.422	3E-7		0.049	NR unit increase	Illumina [NR] (imputed)	N
1270	chr4	89841059	89841060	rs10028589	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs10028589-T	0.297	6E-8		0.011	unit decrease	Illumina [NR] (imputed)	N
1270	chr4	89841059	89841060	rs10028589	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs10028589-T	0.296	3E-7		0.049	NR unit decrease	Illumina [NR] (imputed)	N
1270	chr4	89841069	89841070	rs6824218	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs6824218-T	0.57	4E-6		0.04	NR unit decrease	Illumina [NR] (imputed)	N
1270	chr4	89841169	89841170	rs10028679	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs10028679-T	0.264	2E-7		0.012	unit decrease	Illumina [NR] (imputed)	N
1270	chr4	89841169	89841170	rs10028679	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs10028679-T	0.259	2E-6		0.053	NR unit decrease	Illumina [NR] (imputed)	N
1270	chr4	89847654	89847655	rs6835019	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs6835019-A	0.721	2E-7		0.01	unit increase	Illumina [NR] (imputed)	N
1270	chr4	89847654	89847655	rs6835019	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs6835019-A	0.723	4E-7		0.05	NR unit increase	Illumina [NR] (imputed)	N
1270	chr4	89848582	89848583	rs2704589	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q22.1	NR	rs2704589-C	0.742801	1E-10				Affymetrix, Illumina [24649327] (imputed)	N
1270	chr4	89848582	89848583	rs2704589	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	4q22.1	NR	rs2704589-C	0.786042	1E-12		0.015861	[0.011-0.02] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
1270	chr4	89849771	89849772	rs2704588	26912274	Zeng Y	2016-02-25	Sci Rep	Novel loci and pathways significantly associated with longevity.	Longevity	2,178 Han Chinese ancestry centenarian cases, 2,299 Han Chinese ancestry middle-age controls	NA	4q22.1	FAM13A	rs2704588-T	NR	2E-7		4.032258	[NR]	Illumina [5595657] (imputed)	N
1270	chr4	89851186	89851186	rs145416558	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	4q22.1	FAM13A	rs145416558-AT	NR	5E-8		0.027179	[0.017-0.037] unit decrease	Affymetrix [319769] (imputed)	N
1270	chr4	89853597	89853598	rs1458562	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs1458562-T	0.428	2E-6		0.008	unit decrease	Illumina [NR] (imputed)	N
1270	chr4	89853597	89853598	rs1458562	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs1458562-T	0.427	2E-6		0.041	NR unit decrease	Illumina [NR] (imputed)	N
1270	chr4	89854078	89854079	rs4693977	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs4693977-A	0.301	2E-7		0.01	unit decrease	Illumina [NR] (imputed)	N
1270	chr4	89854078	89854079	rs4693977	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs4693977-A	0.298	6E-7		0.048	NR unit decrease	Illumina [NR] (imputed)	N
1270	chr4	89854166	89854167	rs4693978	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	4q22.1		rs4693978-?	NR	2E-18				NR [~ 8900000] (imputed)	N
1270	chr4	89854166	89854167	rs4693978	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs4693978-A	0.428	5E-6		0.008	unit increase	Illumina [NR] (imputed)	N
1270	chr4	89854166	89854167	rs4693978	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs4693978-A	0.427	3E-6		0.04	NR unit increase	Illumina [NR] (imputed)	N
1270	chr4	89854191	89854192	rs10008568	31902109	Li D	2020-01-04	Genes Genomics	Progressive effects of single-nucleotide polymorphisms on 16 phenotypic traits based on longitudinal data.	Lung function	up to 4,291 Korean ancestry individuals	NA	4q22.1	FAM13A	rs10008568-A	0.4974	2E-7	(FVC)	1.492	NR unit increase	Affymetrix [305158]	N
1270	chr4	89854191	89854192	rs10008568	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs10008568-A	0.57	5E-6		0.008	unit decrease	Illumina [NR] (imputed)	N
1270	chr4	89854191	89854192	rs10008568	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs10008568-A	0.57	3E-6		0.04	NR unit decrease	Illumina [NR] (imputed)	N
1270	chr4	89854960	89854961	rs2609280	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Receptor for advanced glycosylation end products levels	21,758 European ancestry individuals	9,173 individuals	4q22.1		rs2609280-A	0.24	4E-10		0.063	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1270	chr4	89854993	89854994	rs13149750	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs13149750-A	0.57	3E-6		0.008	unit decrease	Illumina [NR] (imputed)	N
1270	chr4	89854993	89854994	rs13149750	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs13149750-A	0.571	3E-6		0.04	NR unit decrease	Illumina [NR] (imputed)	N
1270	chr4	89855494	89855495	rs2609279	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	4q22.1	FAM13A	rs2609279-T	0.2145	6E-11		0.0202	[0.014-0.026] unit increase	Affymetrix [19819130] (imputed)	N
1270	chr4	89855494	89855495	rs2609279	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	4q22.1	FAM13A	rs2609279-T	0.2145	1E-17		0.0245	[0.019-0.03] unit decrease	Affymetrix [19819130] (imputed)	N
1270	chr4	89855494	89855495	rs2609279	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	4q22.1	FAM13A	rs2609279-T	0.2145	2E-76		0.0537	[0.048-0.059] unit increase	Affymetrix [19819130] (imputed)	N
1270	chr4	89857290	89857291	rs576406049	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	4q22.1	FAM13A	rs576406049-T	0.0013	2E-6		1.65	[1.35-2.03]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1270	chr4	89860818	89860819	rs7660385	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs7660385-T	0.692	2E-8		0.011	unit increase	Illumina [NR] (imputed)	N
1270	chr4	89860818	89860819	rs7660385	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs7660385-T	0.695	6E-8		0.052	NR unit increase	Illumina [NR] (imputed)	N
1270	chr4	89860829	89860830	rs7682317	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs7682317-T	0.451	2E-12		0.012	unit decrease	Illumina [NR] (imputed)	N
1270	chr4	89860829	89860830	rs7682317	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs7682317-T	0.449	2E-12		0.061	NR unit decrease	Illumina [NR] (imputed)	N
1270	chr4	89860842	89860843	rs2464522	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	4q22.1		rs2464522-?	NR	2E-94				NR [~ 8900000] (imputed)	N
1270	chr4	89864445	89864446	rs1246642	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic obstructive pulmonary disease	13,530 European ancestry cases, 454,945 European ancestry controls, 4,017 East Asian ancestry cases, 162,653 East Asian ancestry controls	NA	4q22.1		rs1246642-T	NR	4E-9		0.0751	[0.05-0.1] unit increase	Affymetrix, Illumina [25843162] (imputed)	N
1270	chr4	89866712	89866713	rs4416442	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs4416442-T	0.547	1E-12		0.013	unit increase	Illumina [NR] (imputed)	N
1270	chr4	89866712	89866713	rs4416442	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs4416442-T	0.548	1E-12		0.062	NR unit increase	Illumina [NR] (imputed)	N
1270	chr4	89866712	89866713	rs4416442	25241909	Lee JH	2014-09-21	Respir Res	Genetic susceptibility for chronic bronchitis in chronic obstructive pulmonary disease.	Chronic bronchitis and chronic obstructive pulmonary disease	up to 1,662 European ancestry cases, up to 3,520 European ancestry smoker controls, 182 African American cases, 1,749 African American smoker controls	NA	4q22.1	FAM13A	rs4416442-?	0.4	2E-10		1.36	[1.24-1.50]	Illumina [NR] (imputed)	N
1270	chr4	89866712	89866713	rs4416442	24621683	Cho MH	2014-02-07	Lancet Respir Med	Risk loci for chronic obstructive pulmonary disease: a genome-wide association study and meta-analysis.	Chronic obstructive pulmonary disease (severe)	3,145 European ancestry cases, 3,955 European ancestry controls, 352 African American cases, 1,749 African American controls	2,651 cases and their relatives	4q22.1	FAM13A	rs4416442-C	0.42	9E-15		1.36	[1.26-1.47]	Illumina [up to 701491] (imputed)	N
1270	chr4	89866712	89866713	rs4416442	24621683	Cho MH	2014-02-07	Lancet Respir Med	Risk loci for chronic obstructive pulmonary disease: a genome-wide association study and meta-analysis.	Chronic obstructive pulmonary disease (moderate to severe)	5,812 European ancestry cases, 3,955 European ancestry controls, 821 African American cases, 1,749 African American controls	2,651 cases and their relatives	4q22.1	FAM13A	rs4416442-C	0.42	1E-14		1.28	[1.20-1.36]	Illumina [up to 701491] (imputed)	N
1270	chr4	89869077	89869078	rs2869966	30940143	Zhu Z	2019-04-02	Respir Res	Genetic overlap of chronic obstructive pulmonary disease and cardiovascular disease-related traits: a large-scale genome-wide cross-trait analysis.	Chronic obstructive pulmonary disease or high blood pressure (pleiotropy)	12,550 European and unknown ancestry chronic obstructive pulmonary disease cases, 46,368 European and unknown ancestry controls, 144,793 European ancestry high blood pressure cases, 313,761 European ancestry controls	NA	4q22.1	FAM13A	rs2869966-?	NR	3E-14				Affymetrix [up to 7325140] (imputed)	N
1270	chr4	89869077	89869078	rs2869966	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	4q22.1	FAM13A	rs2869966-T	0.4065	1E-11		0.0173	[0.012-0.022] unit decrease	Affymetrix [19819130] (imputed)	N
1270	chr4	89869077	89869078	rs2869966	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	4q22.1	FAM13A	rs2869966-T	0.4065	2E-13		0.0175	[0.013-0.022] unit increase	Affymetrix [19819130] (imputed)	N
1270	chr4	89869077	89869078	rs2869966	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	4q22.1	FAM13A	rs2869966-T	0.4065	6E-66		0.0415	[0.037-0.046] unit decrease	Affymetrix [19819130] (imputed)	N
1270	chr4	89869077	89869078	rs2869966	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs2869966-T	0.55	2E-12		0.012	unit decrease	Illumina [NR] (imputed)	N
1270	chr4	89869077	89869078	rs2869966	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs2869966-T	0.55	1E-12		0.062	NR unit decrease	Illumina [NR] (imputed)	N
1270	chr4	89869077	89869078	rs2869966	25241909	Lee JH	2014-09-21	Respir Res	Genetic susceptibility for chronic bronchitis in chronic obstructive pulmonary disease.	Chronic obstructive pulmonary disease	3,777 European ancestry cases, 3,520 European ancestry smoker controls	NA	4q22.1	FAM13A	rs2869966-T	0.41	7E-10		1.29	[1.19-1.40]	Illumina [NR] (imputed)	N
1270	chr4	89869331	89869332	rs2869967	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs2869967-T	0.393	7E-12		0.012	unit increase	Illumina [NR] (imputed)	N
1270	chr4	89869331	89869332	rs2869967	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs2869967-T	0.394	1E-10		0.057	NR unit increase	Illumina [NR] (imputed)	N
1270	chr4	89869331	89869332	rs2869967	25241909	Lee JH	2014-09-21	Respir Res	Genetic susceptibility for chronic bronchitis in chronic obstructive pulmonary disease.	Chronic bronchitis and chronic obstructive pulmonary disease	up to 1,662 European ancestry cases, up to 3,520 European ancestry smoker controls, 182 African American cases, 1,749 African American smoker controls	NA	4q22.1	FAM13A	rs2869967-C	0.41	6E-10	(EA)	1.38	[1.25-1.53]	Illumina [NR] (imputed)	N
1270	chr4	89869331	89869332	rs2869967	23284291	Hancock DB	2012-12-20	PLoS Genet	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (smoking interaction)	50,047 European ancestry individuals	NA	4q22.1	FAM13A	rs2869967-?	NR	5E-11	(FEV1/FVC, Ever-smoking)			NR [~ 2500000] (imputed)	N
1270	chr4	89869331	89869332	rs2869967	20010835	Hancock DB	2009-12-13	Nat Genet	Meta-analyses of genome-wide association studies identify multiple loci associated with pulmonary function.	Pulmonary function	20,890 European ancestry individuals	16,178 European ancestry individuals	4q22.1	FAM13A	rs2869967-T	0.61	1E-7	(FEV1/FVC)	0.3	[NR] % increase	Affymetrix, Illumina [2534500] (imputed)	N
1270	chr4	89869917	89869918	rs1812329	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs1812329-A	0.468	2E-12		0.012	unit decrease	Illumina [NR] (imputed)	N
1270	chr4	89869917	89869918	rs1812329	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs1812329-A	0.466	1E-12		0.062	NR unit decrease	Illumina [NR] (imputed)	N
1270	chr4	89870963	89870964	rs2045517	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FEV1/FVC)	48,943 European ancestry individuals	57,176 European ancestry individuals, 38,199 individuals.	4q22.1	FAM13A	rs2045517-T	0.4069	1E-11		0.046	[0.032-0.06] unit decrease	Affymetrix [27624732] (imputed)	N
1270	chr4	89870963	89870964	rs2045517	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs2045517-T	0.485	6E-12		0.012	unit decrease	Illumina [NR] (imputed)	N
1270	chr4	89870963	89870964	rs2045517	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs2045517-T	0.481	1E-10		0.057	NR unit decrease	Illumina [NR] (imputed)	N
1270	chr4	89872175	89872176	rs7674369	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs7674369-A	0.472	2E-12		0.012	unit decrease	Illumina [NR] (imputed)	N
1270	chr4	89872175	89872176	rs7674369	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs7674369-A	0.468	2E-12		0.061	NR unit decrease	Illumina [NR] (imputed)	N
1270	chr4	89872175	89872176	rs7674369	25101718	Lee JH	2015-03-01	Am J Respir Cell Mol Biol	IREB2 and GALC are associated with pulmonary artery enlargement in chronic obstructive pulmonary disease.	Chronic obstructive pulmonary disease	3,281 European ancestry cases, 494 African American cases, 2,712 European ancestry smoker controls, 1,749 African American smoker controls	NA	4q22.1	FAM13A	rs7674369-A	0.41	1E-10		1.29	[1.19-1.39]	Illumina [NR] (imputed)	N
1270	chr4	89873091	89873092	rs6837671	28166215	Hobbs BD	2017-02-06	Nat Genet	Genetic loci associated with chronic obstructive pulmonary disease overlap with loci for lung function and pulmonary fibrosis.	Chronic obstructive pulmonary disease	11,157 European ancestry cases, 36,699 European ancestry controls, 1,142 African American cases, 2,380 African American controls, 199 Korean ancestry cases, 6,741 Korean ancestry controls, 52 Hispanic cases, 548 Hispanic controls.	12,051 European ancestry cases, 11,111 European ancestry controls, 153 Korean ancestry cases, 205 Korean ancestry controls.	4q22.1	FAM13A	rs6837671-G	0.41	7E-15		1.12	[1.09,1.15]	Affymetrix, Illumina [NR] (imputed)	N
1270	chr4	89873091	89873092	rs6837671	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs6837671-A	0.535	5E-13		0.013	unit increase	Illumina [NR] (imputed)	N
1270	chr4	89873091	89873092	rs6837671	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs6837671-A	0.537	3E-13		0.064	NR unit increase	Illumina [NR] (imputed)	N
1270	chr4	89874370	89874371	rs147089648	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs147089648-T	0.082	9E-7		0.018	unit decrease	Illumina [NR] (imputed)	N
1270	chr4	89874370	89874371	rs147089648	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs147089648-T	0.083	6E-7		0.087	NR unit decrease	Illumina [NR] (imputed)	N
1270	chr4	89875693	89875694	rs56162738	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	4q22.1	FAM13A	rs56162738-G	NR	1E-8		0.019224	[0.013-0.026] unit increase	Affymetrix [319769] (imputed)	N
1270	chr4	89875693	89875694	rs56162738	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	4q22.1	FAM13A	rs56162738-G	NR	4E-9		0.0198552	[0.013-0.026] unit increase	Affymetrix [319769] (imputed)	N
1270	chr4	89875693	89875694	rs56162738	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	4q22.1	NR	rs56162738-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1270	chr4	89875908	89875909	rs1964516	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs1964516-T	0.466	6E-9		0.01	unit decrease	Illumina [NR] (imputed)	N
1270	chr4	89875908	89875909	rs1964516	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs1964516-T	0.468	5E-7		0.044	NR unit decrease	Illumina [NR] (imputed)	N
1270	chr4	89875908	89875909	rs1964516	22080838	Cho MH	2011-11-11	Hum Mol Genet	A genome-wide association study of COPD identifies a susceptibility locus on chromosome 19q13.	Chronic obstructive pulmonary disease	3,499 European ancestry cases, 1,922 European ancestry controls	983 cases, 1,876 sibling controls	4q22.1	FAM13A	rs1964516-?	NR	2E-9		1.37	[1.23-1.52]	Illumina [797983]	N
1270	chr4	89879195	89879196	rs1585258	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic obstructive pulmonary disease	4,017 East Asian ancestry cases, 162,653 East Asian ancestry controls	NA	4q22.1		rs1585258-T	0.654912533	4E-8		0.13438311	[0.086-0.183] unit increase	Illumina [13427899] (imputed)	N
1270	chr4	89879195	89879196	rs1585258	33766948	Zhu Z	2021-03-25	Eur Respir J	A large-scale genome-wide association analysis of lung function in the Chinese population identifies novel loci and highlights shared genetic etiology with obesity.	Lung function (FEV1/FVC)	100,285 Chinese ancestry individuals	NA	4q22.1		rs1585258-G	0.4	5E-21		0.043	unit increase	Affymetrix [NR] (imputed)	N
1270	chr4	89879195	89879196	rs1585258	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Chronic obstructive pulmonary disease	3,315 Japanese ancestry cases, 201,592 Japanese ancestry controls	NA	4q22.1		rs1585258-T	0.650805941	3E-9		1.1719328	[1.112011586-1.23508296]	Illumina [8919992] (imputed)	N
1270	chr4	89882589	89882590	rs3857043	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs3857043-T	0.414	8E-9		0.01	unit increase	Illumina [NR] (imputed)	N
1270	chr4	89882589	89882590	rs3857043	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs3857043-T	0.416	2E-6		0.042	NR unit increase	Illumina [NR] (imputed)	N
1270	chr4	89883111	89883112	rs3846287	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs3846287-T	0.584	1E-8		0.01	unit decrease	Illumina [NR] (imputed)	N
1270	chr4	89883111	89883112	rs3846287	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs3846287-T	0.581	4E-6		0.04	NR unit decrease	Illumina [NR] (imputed)	N
1270	chr4	89883817	89883818	rs7671261	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	4q22.1	FAM13A	rs7671261-A	0.55	1E-18		1.09	[1.07-1.11]	Affymetrix, Illumina [6224355] (imputed)	N
1270	chr4	89883817	89883818	rs7671261	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs7671261-A	0.584	1E-8		0.01	unit decrease	Illumina [NR] (imputed)	N
1270	chr4	89883817	89883818	rs7671261	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs7671261-A	0.582	4E-6		0.04	NR unit decrease	Illumina [NR] (imputed)	N
1270	chr4	89883978	89883979	rs7671167	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	4q22.1	FAM13A	rs7671167-C	NR	3E-9		0.0166524	[0.011-0.022] unit decrease	Affymetrix [319769] (imputed)	N
1270	chr4	89883978	89883979	rs7671167	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	4q22.1	FAM13A	rs7671167-C	NR	3E-9		0.0167496	[0.011-0.022] unit decrease	Affymetrix [319769] (imputed)	N
1270	chr4	89883978	89883979	rs7671167	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs7671167-T	0.467	2E-10		0.011	unit decrease	Illumina [NR] (imputed)	N
1270	chr4	89883978	89883979	rs7671167	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs7671167-T	0.468	9E-8		0.046	NR unit decrease	Illumina [NR] (imputed)	N
1270	chr4	89883978	89883979	rs7671167	20173748	Cho MH	2010-02-21	Nat Genet	Variants in FAM13A are associated with chronic obstructive pulmonary disease.	Chronic obstructive pulmonary disease	2,940 European ancestry cases, 1,380 European ancestry controls	502 European ancestry cases, 504 European ancestry controls, 1,110 cases, 2,698 controls	4q22.1	FAM13A	rs7671167-?	0.48	1E-11		1.32	[1.19-1.47]	Illumina [499578]	N
1270	chr4	89885085	89885086	rs2013701	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	7,894 Sub-Saharan African ancestry individuals	NA	4q22.1		rs2013701-G	0.504013	2E-6		0.00864623	[0.005-0.0122] unit decrease	Illumina [13900000] (imputed)	N
1270	chr4	89885085	89885086	rs2013701	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,963 Sub-Saharan African ancestry females	NA	4q22.1		rs2013701-G	0.503917	3E-6		0.0117127	[0.0068-0.0167] unit decrease	Illumina [13900000] (imputed)	N
1270	chr4	89885085	89885086	rs2013701	31710517	Allen RJ	2019-11-11	Am J Respir Crit Care Med	Genome-Wide Association Study of Susceptibility to Idiopathic Pulmonary Fibrosis.	Idiopathic pulmonary fibrosis	2,668 European ancestry cases, 8,591 European ancestry controls	1,456 European ancestry cases, 11,874 European ancestry controls	4q22.1	FAM13A	rs2013701-G	0.513	3E-13		1.2820514	[1.19-1.35]	Affymetrix, Illumina [10790934] (imputed)	N
1270	chr4	89885085	89885086	rs2013701	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs2013701-T	0.514	1E-10		0.011	unit decrease	Illumina [NR] (imputed)	N
1270	chr4	89885085	89885086	rs2013701	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs2013701-T	0.514	7E-9		0.05	NR unit decrease	Illumina [NR] (imputed)	N
1270	chr4	89885713	89885714	rs2904259	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs2904259-T	0.464	2E-10		0.011	unit increase	Illumina [NR] (imputed)	N
1270	chr4	89885713	89885714	rs2904259	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs2904259-T	0.465	2E-7		0.045	NR unit increase	Illumina [NR] (imputed)	N
1270	chr4	89885987	89885988	rs4693980	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs4693980-A	0.578	4E-9		0.01	unit decrease	Illumina [NR] (imputed)	N
1270	chr4	89885987	89885988	rs4693980	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs4693980-A	0.576	2E-6		0.041	NR unit decrease	Illumina [NR] (imputed)	N
1270	chr4	89886296	89886297	rs1903003	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs1903003-T	0.425	2E-8		0.01	unit decrease	Illumina [NR] (imputed)	N
1270	chr4	89886296	89886297	rs1903003	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs1903003-T	0.426	5E-6		0.04	NR unit decrease	Illumina [NR] (imputed)	N
1270	chr4	89895943	89895944	rs2085601	26926045	Adhikari K	2016-03-01	Nat Commun	A genome-wide association scan in admixed Latin Americans identifies loci influencing facial and scalp hair features.	Hair greying	6,357 Latin American individuals	NA	4q22.1	FAM13A, FAM13A-AS1, GPRIN3, HERC3, NAP1L5, TIGD2	rs2085601-?	NR	9E-6				Illumina [9143600] (imputed)	N
1270	chr4	89896890	89896891	rs9307052	33723403	Sha Z	2021-03-15	Nat Hum Behav	The genetic architecture of structural left-right asymmetry of the human brain.	Left-right brain asymmetry	32,256 European ancestry individuals	NA	4q22.1	FAM13A	rs9307052-T	0.11	2E-8				NR [9312144] (imputed)	N
1270	chr4	89897372	89897373	rs17817631	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	4q22.1	NR	rs17817631-?	NR	5E-8				Affymetrix [~ 8270000] (imputed)	N
1270	chr4	89901051	89901052	rs140607031	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs140607031-A	0.033	2E-6		0.032	unit decrease	Illumina [NR] (imputed)	N
1270	chr4	89906988	89906989	rs55734202	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	4q22.1	FAM13A	rs55734202-T	NR	8E-13		0.0285445	[0.021-0.036] unit decrease	Affymetrix [319769] (imputed)	N
1270	chr4	89906988	89906989	rs55734202	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	4q22.1	FAM13A	rs55734202-T	NR	7E-13		0.0286369	[0.021-0.036] unit decrease	Affymetrix [319769] (imputed)	N
1270	chr4	89910700	89910701	rs28658282	32989287	Cuellar-Partida G	2020-09-28	Nat Hum Behav	Genome-wide association study identifies 48 common genetic variants associated with handedness.	Left-handedness	1,766,671 European ancestry individuals	NA	4q22.1	FAM13A	rs28658282-T	0.1026	6E-10		0.95866567	[NR]	Illumina [12493444] (imputed)	N
1270	chr4	89912864	89912865	rs6835979	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	4q22.1		rs6835979-G	0.41	4E-17		8.42	z score increase	Affymetrix [9061022] (imputed)	N
1270	chr4	89912864	89912865	rs6835979	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	4q22.1		rs6835979-G	0.41	4E-9		5.88	z score increase	Affymetrix [9061022] (imputed)	N
1271	chr4	89916223	89916224	rs35232147	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	4q22.1	FAM13A	rs35232147-T	0.3727	3E-8		0.0175	[0.011-0.024] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1271	chr4	89924724	89924725	rs13146548	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs13146548-A	0.606	4E-6		0.042	NR unit decrease	Illumina [NR] (imputed)	N
1271	chr4	89925319	89925320	rs2178586	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs2178586-T	0.532	5E-7		0.009	unit increase	Illumina [NR] (imputed)	N
1271	chr4	89925319	89925320	rs2178586	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs2178586-T	0.535	4E-7		0.044	NR unit increase	Illumina [NR] (imputed)	N
1271	chr4	89925809	89925810	rs6852288	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs6852288-C	0.47	6E-7		0.009	unit decrease	Illumina [NR] (imputed)	N
1271	chr4	89925809	89925810	rs6852288	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs6852288-C	0.468	4E-7		0.044	NR unit decrease	Illumina [NR] (imputed)	N
1271	chr4	89926192	89926193	rs6852928	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs6852928-T	0.531	4E-7		0.009	unit increase	Illumina [NR] (imputed)	N
1271	chr4	89926192	89926193	rs6852928	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs6852928-T	0.534	3E-7		0.044	NR unit increase	Illumina [NR] (imputed)	N
1271	chr4	89927174	89927174	rs59542459	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	4q22.1	FAM13A	rs59542459-A	NR	2E-10		0.0183117	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
1271	chr4	89927174	89927174	rs59542459	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	4q22.1	FAM13A	rs59542459-A	NR	2E-10		0.018214	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
1271	chr4	89927611	89927612	rs13129885	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs13129885-A	0.607	4E-6		0.042	NR unit decrease	Illumina [NR] (imputed)	N
1271	chr4	89928202	89928203	rs10015415	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs10015415-T	0.469	5E-7		0.009	unit decrease	Illumina [NR] (imputed)	N
1271	chr4	89928202	89928203	rs10015415	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs10015415-T	0.467	3E-7		0.044	NR unit decrease	Illumina [NR] (imputed)	N
1271	chr4	89928488	89928489	rs6849143	27612410	van der Plaat DA	2016-09-06	J Allergy Clin Immunol	Genome-wide association study on the FEV1/FVC ratio in never-smokers identifies HHIP and FAM13A.	Pre bronchodilator FEV1/FVC ratio in never-smokers	5,070 European ancestry individuals	1,966 European ancestry individuals	4q22.1	FAM13A	rs6849143-T	0.43	1E-7		0.55	[0.35-0.75] % decrease	Illumina [227981]	N
1271	chr4	89928488	89928489	rs6849143	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs6849143-T	0.589	5E-7		0.009	unit decrease	Illumina [NR] (imputed)	N
1271	chr4	89928488	89928489	rs6849143	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs6849143-T	0.589	3E-7		0.044	NR unit decrease	Illumina [NR] (imputed)	N
1271	chr4	89928531	89928532	rs6823536	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs6823536-T	0.531	5E-7		0.009	unit increase	Illumina [NR] (imputed)	N
1271	chr4	89928531	89928532	rs6823536	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs6823536-T	0.533	3E-7		0.044	NR unit increase	Illumina [NR] (imputed)	N
1271	chr4	89929253	89929254	rs1795720	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs1795720-T	0.531	4E-7		0.009	unit increase	Illumina [NR] (imputed)	N
1271	chr4	89929253	89929254	rs1795720	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs1795720-T	0.533	3E-7		0.044	NR unit increase	Illumina [NR] (imputed)	N
1271	chr4	89929609	89929610	rs1708667	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs1708667-T	0.469	4E-7		0.009	unit decrease	Illumina [NR] (imputed)	N
1271	chr4	89929609	89929610	rs1708667	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs1708667-T	0.467	3E-7		0.044	NR unit decrease	Illumina [NR] (imputed)	N
1271	chr4	89930312	89930313	rs1795739	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs1795739-A	0.465	4E-7		0.009	unit decrease	Illumina [NR] (imputed)	N
1271	chr4	89930312	89930313	rs1795739	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs1795739-A	0.463	3E-7		0.045	NR unit decrease	Illumina [NR] (imputed)	N
1271	chr4	89930391	89930392	rs1398942	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs1398942-A	0.607	4E-6		0.042	NR unit increase	Illumina [NR] (imputed)	N
1271	chr4	89978799	89978800	rs16996151	19875103	Aberg K	2009-10-27	Biol Psychiatry	Genomewide association study of movement-related adverse antipsychotic effects.	Response to antipsychotic therapy (extrapyramidal side effects)	421 European ancestry schizophrenia cases, 214 African American schizophrenia cases, 103 schizophrenia cases	NA	4q22.1	KIAA0914	rs16996151-?	NR	6E-6	(SAS)			Affymetrix [492000]	N
1271	chr4	89996722	89996723	rs6842150	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	4q22.1	FAM13A	rs6842150-C	NR	1E-8		0.0232881	[0.015-0.031] unit decrease	Affymetrix [321114] (imputed)	N
1271	chr4	89996722	89996723	rs6842150	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	4q22.1	FAM13A	rs6842150-C	NR	3E-8		0.0224921	[0.015-0.03] unit decrease	Affymetrix [321169] (imputed)	N
1271	chr4	90019364	90019365	rs6843986	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	4q22.1		rs6843986-?	NR	3E-25				NR [~ 8900000] (imputed)	N
1271	chr4	90027927	90027928	rs28875200	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	FAM13A	rs28875200-A	0.742	4E-6	(AA)	0.084	NR unit increase	Illumina [NR] (imputed)	N
1271	chr4	90031847	90031848	rs72668171	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	4q22.1	FAM13A	rs72668171-A	0.179579	2E-17		0.024875075	[0.019-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
1271	chr4	90031847	90031848	rs72668171	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q22.1	NR	rs72668171-G	0.821982	2E-17				Affymetrix, Illumina [17210439] (imputed)	N
1271	chr4	90031847	90031848	rs72668171	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	4q22.1	NR	rs72668171-G	0.819983	8E-19		0.022121	[0.017-0.027] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1271	chr4	90034685	90034686	rs17015027	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	4q22.1	NR	rs17015027-G	NR	4E-14		0.0216	[0.016-0.027] unit increase	Affymetrix [9000000] (imputed)	N
1271	chr4	90040686	90040687	rs72877642	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	4q22.1	NR	rs72877642-G	0.223	2E-9				NR [9056863] (imputed)	N
1271	chr4	90042784	90042785	rs62306393	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	4q22.1	AC104785.1	rs62306393-A	0.6467	1E-11		0.0134	[0.0095-0.0173] unit decrease	Affymetrix [18391927] (imputed)	N
1271	chr4	90042784	90042785	rs62306393	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	4q22.1		rs62306393-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1272	chr4	90046847	90046848	rs13138280	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	4q22.1		rs13138280-?	NR	7E-8				NR [~ 8900000] (imputed)	N
1272	chr4	90071563	90071564	rs140237746	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	4q22.1	RNU6-907P	rs140237746-A	NR	4E-8		0.021207	[0.014-0.029] unit increase	Affymetrix [319769] (imputed)	N
1272	chr4	90071563	90071564	rs140237746	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	Intergenic	rs140237746-A	0.145	5E-6		0.073	NR unit decrease	Illumina [NR] (imputed)	N
1272	chr4	90093834	90093835	rs184728178	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	4q22.1		rs184728178-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1272	chr4	90104812	90104813	rs76565382	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	Intergenic	rs76565382-C	0.028	3E-6		0.034	unit decrease	Illumina [NR] (imputed)	N
1272	chr4	90104812	90104813	rs76565382	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	Intergenic	rs76565382-C	0.028	4E-6		0.166	NR unit decrease	Illumina [NR] (imputed)	N
1272	chr4	90176942	90176943	rs28432746	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Aspartate aminotransferase levels in excessive alcohol consumption	951 individuals	NA	4q22.1	NR	rs28432746-?	NR	2E-6		0.0134	[0.0079-0.0189] unit decrease	Illumina [~ 7800000] (imputed)	N
1273	chr4	90190814	90190815	rs2116324	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	4q22.1	NR	rs2116324-T	0.8277	2E-6	(Trans/cis-18:2, EA)	0.0066	[0.0039-0.0093] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1273	chr4	90190851	90190852	rs10022302	30999091	Wang Y	2019-04-09	J Affect Disord	Post-traumatic stress following military deployment: Genetic associations and cross-disorder genetic correlations.	Post-traumatic stress disorder symptoms in trauma-exposed soldiers	462 Danish ancestry cases, 2,019 Danish ancestry controls	NA	4q22.1	GPRIN3	rs10022302-G	0.08	8E-7		2.0408163	NR	Illumina [NR] (imputed)	N
1273	chr4	90193726	90193727	rs6830724	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	4q22.1	NR	rs6830724-T	0.8499	1E-6	(Trans/cis-18:2, EA)	0.0067	[0.004-0.0094] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1273	chr4	90194159	90194160	rs6854292	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	4q22.1	NR	rs6854292-A	0.8525	2E-6	(Trans/cis-18:2, EA)	0.0067	[0.004-0.0094] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1273	chr4	90198462	90198463	rs1560489	31564439	Fang H	2019-09-26	Am J Hum Genet	Harmonizing Genetic Ancestry and Self-identified Race/Ethnicity in Genome-wide Association Studies.	Height	up to 248,507 non-Hispanic white individuals, up to 68,155 non-Hispanic black individuals, up to 25,847 Hispanic individuals, up to 3,054 Asian ancestry individuals	NA	4q22.1	NR	rs1560489-C	NR	9E-9	(AA)	0.12	NR unit increase	Affymetrix [723305]	N
1273	chr4	90218018	90218019	rs7670752	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	4q22.1		rs7670752-?	NR	7E-8				NR [~ 8900000] (imputed)	N
1273	chr4	90220658	90220659	rs1431545	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	4q22.1		rs1431545-T	NR	3E-13		0.0163	[0.012-0.021] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
1273	chr4	90220658	90220659	rs1431545	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	4q22.1	GPRIN3	rs1431545-T	0.653709	6E-19		0.021279238	[0.017-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1273	chr4	90220658	90220659	rs1431545	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q22.1	NR	rs1431545-T	0.628235	3E-23				Affymetrix, Illumina [23472807] (imputed)	N
1273	chr4	90220658	90220659	rs1431545	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	4q22.1	NR	rs1431545-T	0.653307	5E-25		0.021141	[0.017-0.025] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1273	chr4	90270990	90270991	rs11721752	31993563	Ware EB	2019-11-22	Mayo Clin Proc Innov Qual Outcomes	Genome-wide Association Study of 24-Hour Urinary Excretion of Calcium, Magnesium, and Uric Acid.	Urinary calcium excretion	6,462 European ancestry individuals	NA	4q22.1	intergenic	rs11721752-T	0.26	7E-6		7.58	NR mg increase	NR [NR] (imputed)	N
1273	chr4	90271507	90271508	rs74735086	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	4q22.1	NR	rs74735086-?	NR	1E-8				Illumina [7760689] (imputed)	N
1274	chr4	90349292	90349293	rs112973307	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Stromal-cell-derived factor 1 alpha levels	5,998 Finnish ancestry individuals	NA	4q22.1	NR	rs112973307-C		8E-6		0.4003	[0.17-0.63] SD units increase	NR [10700000] (imputed)	N
1274	chr4	90421352	90421353	rs1908557	27622933	Li QS	2016-09-13	Transl Psychiatry	Analysis of 23andMe antidepressant efficacy survey data: implication of circadian rhythm and neuroplasticity in bupropion response.	Response to bupropion in depression	2,675 European ancestry responder cases, 1,861 European ancestry non-responder cases	NA	4q22.1	GPRIN3, SNCA	rs1908557-T		3E-8		1.348	[1.213-1.497]	Illumina [~ 12000000] (imputed)	N
1275	chr4	90508339	90508340	rs10516839	32201043	Smeland OB	2020-02-08	Biol Psychiatry	Genome-wide Association Analysis of Parkinson's Disease and Schizophrenia Reveals Shared Genetic Architecture and Identifies Novel Risk Loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	NA	4q22.1	SNCA	rs10516839-T		4E-17		0.1382	[0.11-0.17] unit decrease	Illumina [NR]	N
1276	chr4	90576889	90576890	rs28673968	29066090	Allen RJ	2017-10-20	Lancet Respir Med	Genetic variants associated with susceptibility to idiopathic pulmonary fibrosis in people of European ancestry: a genome-wide association study.	Idiopathic pulmonary fibrosis	602 European ancestry cases, 3,366 European ancestry controls	2,158 cases, 5,195 controls	4q22.1	Intergenic	rs28673968-T	0.877	1E-7		1.2658228	[1.16-1.39]	Affymetrix [NR] (imputed)	N
1276	chr4	90607125	90607126	rs356228	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	4q22.1	SNCA	rs356228-C	0.4589	1E-48		0.1503	[0.13-0.17] unit increase	NR [7784415] (imputed)	N
1276	chr4	90626110	90626111	rs356182	34776419	Brolin K	2021-11-07	J Parkinsons Dis	Insights on Genetic and Environmental Factors in Parkinson's Disease from a Regional Swedish Case-Control Cohort.	Parkinson's disease	929 Swedish ancestry cases, 935 Swedish ancestry controls	NA	4q22.1		rs356182-A	0.617	6E-8		0.686	[0.55-0.82]	Illumina [5445841] (imputed)	N
1276	chr4	90626110	90626111	rs356182	34227697	Loesch DP	2021-07-06	Ann Neurol	Characterizing the Genetic Architecture of Parkinson's Disease in Latinos.	Parkinson's disease	807 Latino cases, 690 Latino controls	1,234 Latino cases, 439,522 Latino controls	4q22.1		rs356182-?	NR	5E-8		0.234	[0.15-0.32] unit increase	Illumina [1240909] (imputed)	N
1276	chr4	90626110	90626111	rs356182	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	4q22.1	SNCA	rs356182-A	0.6278	4E-154		0.2774	[0.26-0.3] unit decrease	NR [7784415] (imputed)	N
1276	chr4	90626110	90626111	rs356182	31660654	Bandres-Ciga S	2019-10-29	Mov Disord	The Genetic Architecture of Parkinson Disease in Spain: Characterizing Population-Specific Risk, Differential Haplotype Structures, and Providing Etiologic Insight.	Parkinson's disease	4,639 Spanish ancestry cases, 2,949 Spanish ancestry controls	NA	4q22.1	SNCA	rs356182-G	0.34261	2E-9		0.223036	[0.15-0.3] unit increase	Illumina [9911207] (imputed)	N
1276	chr4	90626110	90626111	rs356182	28892059	Chang D	2017-09-11	Nat Genet	A meta-analysis of genome-wide association studies identifies 17 new Parkinson's disease risk loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	5,851 European ancestry cases, 5,866 European ancestry controls	4q22.1	SNCA	rs356182-G	0.349	5E-123		1.33	[1.30-1.36]	Illumina [11933700] (imputed)	N
1276	chr4	90626110	90626111	rs356182	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Parkinson's disease	9,619 European ancestry cases, 324,522 European ancestry controls	NA	4q22.1	GPRIN3, SNCA	rs356182-?	NR	1E-56		1.318	[1.274-1.363]	Illumina [12438219] (imputed)	N
1276	chr4	90626110	90626111	rs356182	25064009	Nalls MA	2014-07-27	Nat Genet	Large-scale meta-analysis of genome-wide association data identifies six new risk loci for Parkinson's disease.	Parkinson's disease	13,708 European ancestry cases, 95,282 European ancestry controls	5,353 European ancestry cases, 5,551 European ancestry controls	4q22.1	SNCA	rs356182-G	0.367	4E-73		1.32	[1.29-1.35]	Illumina [7893274] (imputed)	N
1276	chr4	90628438	90628439	rs356179	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	4q22.1	NA	rs356179-G	0.6752	1E-8	(Female)	1.0460252	[1.03-1.06]	Affymetrix, Illumina [NR] (imputed)	N
1276	chr4	90636629	90636630	rs5019538	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	4q22.1	SNCA	rs5019538-A	0.6792	1E-36		0.1565	[0.13-0.18] unit decrease	NR [7784415] (imputed)	N
1276	chr4	90637600	90637601	rs356219	31755958	Blauwendraat C	2019-11-22	Brain	Genetic modifiers of risk and age at onset in GBA associated Parkinson's disease and Lewy body dementia.	Parkinson's disease in GBA mutation carriers	1,588 European ancestry cases, 7,584 European ancestry controls	up to 1,194 European ancestry cases, up to 13,901 European ancestry controls	4q22.1	SNCA	rs356219-?	NR	2E-11		1.29	[1.198-1.391]	Illumina [NR] (imputed)	N
1276	chr4	90637600	90637601	rs356219	22438815	Lill CM	2012-03-15	PLoS Genet	Comprehensive research synopsis and systematic meta-analyses in Parkinson's disease genetics: The PDGene database.	Parkinson's disease	2,197 cases, 2,061 controls	Up to 98,080 European and Asian ancestry individuals	4q22.1	SNCA	rs356219-?	0.41	6E-65	(EA)	1.29	[1.25-1.33]	Illumina, Perlegen [7123920] (imputed)	N
1276	chr4	90637600	90637601	rs356219	21292315	Nalls MA	2011-02-01	Lancet	Imputation of sequence variants for identification of genetic risks for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease	5,333 European ancestry cases, 12,019 European ancestry controls	7,053 cases, 9,007 controls	4q22.1	SNCA	rs356219-G	0.39	2E-47		1.29	[1.25-1.33]	Illumina [7689524] (imputed)	N
1276	chr4	90639514	90639515	rs11931074	19915576	Satake W	2009-11-15	Nat Genet	Genome-wide association study identifies common variants at four loci as genetic risk factors for Parkinson's disease.	Parkinson's disease	988 Japanese ancestry cases, 2,521 Japanese ancestry controls	933 Japanese ancestry cases, 15,753 Japanese ancestry controls	4q22.1	SNCA	rs11931074-?	NR	7E-17		1.37	[1.27-1.48]	Illumina [435470]	N
1276	chr4	90641339	90641340	rs356220	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Parkinson's disease	2,638 European ancestry cases, 477,380 European ancestry controls, 340 East Asian ancestry cases, 175,788 East Asian ancestry controls	NA	4q22.1		rs356220-C	NR	6E-13		0.2542	[0.19-0.32] unit decrease	Affymetrix, Illumina [25844586] (imputed)	N
1276	chr4	90641339	90641340	rs356220	24511991	Hill-Burns EM	2014-02-10	BMC Genomics	Identification of a novel Parkinson's disease locus via stratified genome-wide association study.	Parkinson's disease	1,565 European ancestry sproadic Parkinson's disease cases, 435 European ancestry familial Parkinson's disease cases, 1,986 European ancestry controls	1,528 European ancestry sporadic Parkinson's disease cases, 707 European ancestry familial Parkinson's disease cases, 796 European ancestry controls	4q22.1	SNCA	rs356220-T	0.364	3E-11		1.38	[1.24-1.52]	Illumina [811597]	N
1276	chr4	90641339	90641340	rs356220	24511991	Hill-Burns EM	2014-02-10	BMC Genomics	Identification of a novel Parkinson's disease locus via stratified genome-wide association study.	Parkinson's disease	1,565 European ancestry sproadic Parkinson's disease cases, 435 European ancestry familial Parkinson's disease cases, 1,986 European ancestry controls	1,528 European ancestry sporadic Parkinson's disease cases, 707 European ancestry familial Parkinson's disease cases, 796 European ancestry controls	4q22.1	SNCA	rs356220-T	0.364	1E-9	(Sporadic)	1.37	[1.23-1.51]	Illumina [811597]	N
1276	chr4	90641339	90641340	rs356220	22451204	Pankratz N	2012-03-01	Ann Neurol	Meta-analysis of Parkinson's disease: identification of a novel locus, RIT2.	Parkinson's disease	4,238 European ancestry cases, 4,239 European ancestry controls	3,738 European ancestry cases, 2,111 European ancestry controls	4q22.1	SNCA	rs356220-?	NR	8E-35		1.38	[NR]	Illumina [2500000] (imputed)	N
1276	chr4	90641339	90641340	rs356220	21738487	Do CB	2011-06-23	PLoS Genet	Web-based genome-wide association study identifies two novel loci and a substantial genetic component for Parkinson's disease.	Parkinson's disease	3,426 European ancestry cases, 29,624 European ancestry controls	NA	4q22.1	SNCA	rs356220-T	0.375	2E-19		1.29	[1.22-1.36]	Illumina [522782]	N
1276	chr4	90641339	90641340	rs356220	21084426	Saad M	2010-11-17	Hum Mol Genet	Genome-wide association study confirms BST1 and suggests a locus on 12q24 as the risk loci for Parkinson's disease in the European population.	Parkinson's disease	1,039 European ancestry cases, 1,984 European ancestry controls	3,232 European ancestry cases, 7,064 European ancestry controls	4q22.1	SNCA	rs356220-T	0.35	3E-8		1.37	[NR]	Illumina [492929]	N
1276	chr4	90641339	90641340	rs356220	21044948	Spencer CC	2010-11-02	Hum Mol Genet	Dissection of the genetics of Parkinson's disease identifies an additional association 5' of SNCA and multiple associated haplotypes at 17q21.	Parkinson's disease	1,705 European ancestry cases, 5,175 European ancestry controls	1,039 European ancestry cases, 1,984 European ancestry controls	4q22.1	SNCA	rs356220-A	0.36	9E-16		1.27	[1.17-1.37]	Illumina [532616]	N
1276	chr4	90641339	90641340	rs356220	20711177	Hamza TH	2010-08-15	Nat Genet	Common genetic variation in the HLA region is associated with late-onset sporadic Parkinson's disease.	Parkinson's disease	2,000 European ancestry cases, 1,986 European ancestry controls	Up to 1,447 cases, 1,468 controls	4q22.1	SNCA	rs356220-T	0.36	3E-11		1.38	[1.25-1.52]	Illumina [811597]	N
1276	chr4	90644453	90644454	rs8180209	28011712	Foo JN	2016-12-22	Hum Mol Genet	Genome-wide association study of Parkinson's disease in East Asians.	Parkinson's disease	779 Han Chinese ancestry cases, 13,227 Han Chinese ancestry controls	5,125 Asian ancestry cases, 17,604 Asian ancestry controls	4q22.1	SNCA, GPRIN3	rs8180209-?	NR	1E-32		1.41		Illumina [2402394] (imputed)	N
1276	chr4	90666040	90666041	rs356203	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	4q22.1	SNCA	rs356203-T	0.6149	5E-149		0.2504	[0.23-0.27] unit decrease	NR [7784415] (imputed)	N
1276	chr4	90666040	90666041	rs356203	31660654	Bandres-Ciga S	2019-10-29	Mov Disord	The Genetic Architecture of Parkinson Disease in Spain: Characterizing Population-Specific Risk, Differential Haplotype Structures, and Providing Etiologic Insight.	Parkinson's disease (age of onset)	3,997 Spanish ancestry individuals	NA	4q22.1	SNCA	rs356203-T	0.6226	2E-7		1.4337	[0.89-1.98] unit increase	Illumina [9911207] (imputed)	N
1276	chr4	90666040	90666041	rs356203	30957308	Blauwendraat C	2019-04-07	Mov Disord	Parkinson's disease age at onset genome-wide association study: Defining heritability, genetic loci, and ?-synuclein mechanisms.	Parkinson's disease (age of onset)	17,996 cases	10,572 cases	4q22.1	SNCA	rs356203-?	NR	2E-12		0.626	[0.45-0.80] unit decrease	Illumina [6850647] (imputed)	N
1276	chr4	90678540	90678541	rs2736990	20070850	Edwards TL	2010-01-13	Ann Hum Genet	Genome-wide association study confirms SNPs in SNCA and the MAPT region as common risk factors for Parkinson disease.	Parkinson's disease	1,752 European ancestry cases, 1,745 European ancestry controls	NA	4q22.1	SNCA	rs2736990-?	NR	7E-8		1.29	[1.18-1.43]	Illumina [495715] (imputed)	N
1276	chr4	90678540	90678541	rs2736990	19915575	Simon-Sanchez J	2009-11-15	Nat Genet	Genome-wide association study reveals genetic risk underlying Parkinson's disease.	Parkinson's disease	1,713 European ancestry cases, 3,978 European ancestry controls	3,361 European ancestry cases, 4,573 European ancestry controls	4q22.1	SNCA	rs2736990-C	0.51	2E-16		1.23	[NR]	Illumina [463185]	N
1276	chr4	90682473	90682474	rs6826785	32310270	Foo JN	2020-04-20	JAMA Neurol	Identification of Risk Loci for Parkinson Disease in Asians and Comparison of Risk Between Asians and Europeans: A Genome-Wide Association Study.	Parkinson's disease	6,724 East Asian ancestry cases, 24,851 East Asian ancestry controls	57,545 European ancestry cases, 1,868,816 European ancestry controls, 988 Japanese ancestry cases, 2,521 Japanese ancestry controls	4q22.1	SNCA	rs6826785-?	NR	2E-37				Illumina [5843213] (imputed)	N
1277	chr4	90718389	90718390	rs33978842	31324189	Kim W	2019-07-19	Respir Res	DSP variants may be associated with longitudinal change in quantitative emphysema.	Emphysema annual change measurement in smokers (adjusted lung density)	4,427 European ancestry individuals, 1,158 African American individuals	NA	4q22.1	SNCA	rs33978842-G	0.96	7E-6	(EA)	0.245	[0.14-0.35] unit decrease	Illumina [NR] (imputed)	N
1277	chr4	90736516	90736517	rs3822095	30014611	Weiss RB	2018-07-16	Ann Neurol	Long-range genomic regulators of THBS1 and LTBP4 modify disease severity in Duchenne muscular dystrophy.	Age at loss of ambulation in Duchenne muscular dystrophy	243 European ancestry cases, 10 cases	NA	4q22.1	NR	rs3822095-?	NR	6E-6				Illumina [1735619]	N
1277	chr4	90737326	90737327	rs974711	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling nervous	373,121 European ancestry individuals	NA	4q22.1	SNCA	rs974711-A	0.456529	1E-9		6.06	z score increase	NR [10847151] (imputed)	N
1277	chr4	90739247	90739248	rs3775458	33884653	Li C	2021-04-21	Mov Disord	Genetic Modifiers of Age at Onset for Parkinson's Disease in Asians: A Genome-Wide Association Study.	Parkinson's disease (age of onset)	3,456 Chinese ancestry individuals	1,490 Chinese ancestry individuals	4q22.1	SNCA	rs3775458-?		1E-6		1.41	[0.84-1.98] unit decrease	Illumina [~ 660000] (imputed)	N
1277	chr4	90743330	90743331	rs10005233	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Anxiety	at least 23,606 European ancestry cases, at least 113,351 European ancestry controls	624,615 European ancestry cases, 1,310,854 European ancestry controls	4q22.1	SNCA	rs10005233-C	0.495	4E-11		0.015021692	[0.0099-0.0201] unit decrease	NR [9417325] (imputed)	N
1277	chr4	90743330	90743331	rs10005233	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	4q22.1		rs10005233-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1277	chr4	90743330	90743331	rs10005233	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	4q22.1	NR	rs10005233-C	NR	3E-10		0.01508	[0.01-0.02] unit decrease	Affymetrix [10847151] (imputed)	N
1277	chr4	90743330	90743331	rs10005233	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	4q22.1	SNCA	rs10005233-T	0.478406	2E-10		6.35	z score increase	NR [10847151] (imputed)	N
1277	chr4	90750024	90750025	rs6828271	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	4q22.1	NR	rs6828271-T	NR	8E-10		6.142	z score increase	Affymetrix [10847151] (imputed)	N
1277	chr4	90753179	90753180	rs2737002	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q22.1	SNCA	rs2737002-G	0.790625	1E-9	(SNCA, 8458_111_3)	0.18101063	[0.12-0.24] unit decrease	Illumina [> 1000000] (imputed)	N
1277	chr4	90756549	90756550	rs7681440	29263008	Guerreiro R	2018-01-01	Lancet Neurol	Investigating the genetic architecture of dementia with Lewy bodies: a two-stage genome-wide association study.	Dementia with Lewy bodies	1,216 European ancestry cases, 3,791 European ancestry controls	527 European ancestry cases, 663 European ancestry controls	4q22.1	SNCA	rs7681440-?	0.52	9E-13		1.369863	[1.27-1.49]	Illumina [8397716] (imputed)	N
1277	chr4	90757293	90757294	rs1372518	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q22.1	SNCA	rs1372518-C	0.775	8E-30	(SNCA, 8458_16_3)	0.33049238	[0.27-0.39] unit decrease	Illumina [> 1000000] (imputed)	N
1277	chr4	90757393	90757394	rs3756063	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	4q22.1		rs3756063-C	NR	2E-8		0.0126	[0.0083-0.0169] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
1277	chr4	90757504	90757505	rs1372520	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on self-rated math ability (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	4q22.1		rs1372520-?	NR	1E-9				NR [NR]	N
1277	chr4	90757504	90757505	rs1372520	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on educational attainment (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	4q22.1		rs1372520-?	NR	3E-10				NR [NR]	N
1277	chr4	90757504	90757505	rs1372520	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on average household income before tax (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	4q22.1		rs1372520-?	NR	2E-10				NR [NR]	N
1277	chr4	90757504	90757505	rs1372520	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on Townsend deprivation index (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	4q22.1		rs1372520-?	NR	1E-9				NR [NR]	N
1277	chr4	90757504	90757505	rs1372520	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Neuroticism	170,911 European ancestry individuals	NA	4q22.1	NR	rs1372520-T	0.207	2E-6		0.020366123	[0.012-0.029] unit decrease	Affymetrix [up to 6544775] (imputed)	N
1277	chr4	90757839	90757840	rs2245801	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SNCA	5,367 Icelandic ancestry individuals	NA	4q22.1		rs2245801-T	0.2133	2E-47		0.330977	[0.29-0.38] unit increase	Illumina [7506463] (imputed)	N
1277	chr4	90757839	90757840	rs2245801	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	4q22.1	SNCA	rs2245801-C	0.788	1E-16	(Alpha-synuclein, SNCA.8458.111.3)	0.25	[0.19-0.31] unit decrease	Affymetrix [10572788] (imputed)	N
1277	chr4	90759555	90759556	rs3806789	34064523	Rodrigo LM	2021-05-04	Genes (Basel)	Imputation and Reanalysis of ExomeChip Data Identifies Novel, Conditional and Joint Genetic Effects on Parkinson's Disease Risk.	Parkinson's disease	5,167 European ancestry cases, 5,366 European ancestry controls	NA	4q22.1	SNCA	rs3806789-C	0.4951	9E-10	(conditioned on rs356182)	0.8265	NR	Illumina [1465938] (imputed)	N
1277	chr4	90761943	90761944	rs983361	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SNCA	5,361 Icelandic ancestry individuals	NA	4q22.1		rs983361-T	0.2314	5E-15		0.172571	[0.13-0.22] unit increase	Illumina [7506463] (imputed)	N
1277	chr4	90761943	90761944	rs983361	34064523	Rodrigo LM	2021-05-04	Genes (Basel)	Imputation and Reanalysis of ExomeChip Data Identifies Novel, Conditional and Joint Genetic Effects on Parkinson's Disease Risk.	Parkinson's disease	5,167 European ancestry cases, 5,366 European ancestry controls	NA	4q22.1	SNCA	rs983361-T	0.217	6E-9		0.819506	[0.766273-0.876438}	Illumina [1465938] (imputed)	N
1277	chr4	90761943	90761944	rs983361	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on highest math class (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	4q22.1		rs983361-?	NR	1E-9				NR [NR]	N
1277	chr4	90761943	90761944	rs983361	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on cognitive performance (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	4q22.1		rs983361-?	NR	1E-9				NR [NR]	N
1277	chr4	90761943	90761944	rs983361	30957308	Blauwendraat C	2019-04-07	Mov Disord	Parkinson's disease age at onset genome-wide association study: Defining heritability, genetic loci, and ?-synuclein mechanisms.	Parkinson's disease (age of onset)	17,996 cases	10,572 cases	4q22.1	SNCA	rs983361-?	NR	7E-6	(Conditional)	0.484	[0.27-0.70] unit decrease	Illumina [6850647] (imputed)	N
1277	chr4	90763359	90763360	rs7680557	33589841	Chia R	2021-02-15	Nat Genet	Genome sequencing analysis identifies new loci associated with Lewy body dementia and provides insights into its genetic architecture.	Dementia with Lewy bodies	2,591 European ancestry cases, 4,027 European ancestry controls	970 European ancestry cases, 8,928 European ancestry controls	4q22.1		rs7680557-C	0.509	3E-17		0.76	[0.64-0.90]	NR [20137051]	N
1277	chr4	90780901	90780902	rs6532194	22438815	Lill CM	2012-03-15	PLoS Genet	Comprehensive research synopsis and systematic meta-analyses in Parkinson's disease genetics: The PDGene database.	Parkinson's disease	2,197 cases, 2,061 controls	Up to 98,080 European and Asian ancestry individuals	4q22.1	SNCA	rs6532194-?	0.40	5E-11	(Asian)	1.29	[1.20-1.39]	Illumina, Perlegen [7123920] (imputed)	N
1277	chr4	90797300	90797301	rs6532197	19915575	Simon-Sanchez J	2009-11-15	Nat Genet	Genome-wide association study reveals genetic risk underlying Parkinson's disease.	Parkinson's disease	1,713 European ancestry cases, 3,978 European ancestry controls	3,361 European ancestry cases, 4,573 European ancestry controls	4q22.1	MMRN1	rs6532197-G	0.09	1E-7		1.32	[NR]	Illumina [463185]	N
1277	chr4	90820306	90820307	rs78896073	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	4q22.1	MMRN1	rs78896073-A	0.0464	3E-10		0.0283	[0.019-0.037] unit decrease	Affymetrix [18391927] (imputed)	N
1277	chr4	90820808	90820809	rs72657797	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	4q22.1	NR	rs72657797-C	0.8241	2E-12		1.0570824	[1.04-1.07]	Affymetrix, Illumina [NR] (imputed)	N
1278	chr4	90872162	90872163	rs62312664	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Large artery stroke	350 Indian ancestry cases, 2,154 Indian ancestry controls	NA	4q22.1		rs62312664-?	NR	8E-6		0.9579256	[0.93997074366942-0.976223410841088]	Illumina [up to 7827597] (imputed)	N
1278	chr4	90929793	90929794	rs6855649	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter alcoholic beverage consumption	336,448 European ancestry individuals	39,924 European ancestry individuals	4q22.1	MMRN1	rs6855649-A	0.3608	5E-6		0.0049	[0.0027-0.0071] unit increase	Affymetrix [~ 7740000] (imputed)	N
1278	chr4	90939566	90939567	rs13102162	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Neuroticism	274,107 British ancestry individuals	NA	4q22.1	NR	rs13102162-G	0.3591	7E-9		0.01124	[0.0074-0.015] unit decrease	NR [8968716] (imputed)	N
1278	chr4	90941047	90941048	rs1838223	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Precuneus cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	4q22.1	NR	rs1838223-?		4E-6				Illumina [4322238] (imputed)	N
1279	chr4	91017610	91017611	rs6855891	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Neuroticism	170,911 European ancestry individuals	NA	4q22.1	NR	rs6855891-T	0.178	5E-6		0.02097382	[0.012-0.03] unit increase	Affymetrix [up to 6544775] (imputed)	N
1279	chr4	91024177	91024178	rs140962713	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	4q22.1	CCSER1	rs140962713-T	0.0269332323963703	4E-8	(G_Coprococcus_HB)	1.22873	[0.79-1.67] unit decrease	Illumina [7711310] (imputed)	N
1279	chr4	91063099	91063100	rs149418637	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	4q22.1	CCSER1	rs149418637-G	0.00826241783050743	9E-6	(G_Coprococcus_HB)	1.80523	[1.01-2.6] unit decrease	Illumina [7711310] (imputed)	N
1279	chr4	91070315	91070316	rs140295038	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	4q22.1	CCSER1	rs140295038-A	0.0102883320325941	6E-7	(O_Lactobacillales_HB)	1.70358	[1.03-2.37] unit decrease	Illumina [7711310] (imputed)	N
1279	chr4	91091769	91091770	rs10026036	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	4q22.1		rs10026036-?	NR	4E-9		0.0177	unit increase	NR [NR]	N
1280	chr4	91136740	91136741	rs62313897	28990359	Polimanti R	2017-10-09	Am J Med Genet B Neuropsychiatr Genet	Ancestry-specific and sex-specific risk alleles identified in a genome-wide gene-by-alcohol dependence interaction study of risky sexual behaviors.	Risky sexual behaviors (alcohol dependence interaction)	454 African American women cases, 1,087 African American men cases, 444 European ancestry women cases, 992 European ancestry men cases, 231 African American women controls, 401 African American men controls, 142 European ancestry women controls, 173 European ancestry men controls		4q22.1	CCSER1	rs62313897-?	0.942	8E-10	(EA, men)			Illumina [at least 550000] (imputed)	N
1281	chr4	91243864	91243865	rs7656001	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	4q22.1	NR	rs7656001-G	0.4499	1E-8		0.026	[0.017-0.035] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
1281	chr4	91245505	91245506	rs7658082	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	4q22.1	CCSER1	rs7658082-T	0.450788	3E-9		0.0113473	[0.0076-0.0151] unit increase	Affymetrix [NR] (imputed)	N
1281	chr4	91259126	91259127	rs1461741	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	4q22.1		rs1461741-?	NR	7E-9				NR [~ 8900000] (imputed)	N
1281	chr4	91287476	91287477	rs1841625	30804566	Lane JM	2019-02-25	Nat Genet	Biological and clinical insights from genetics of insomnia symptoms.	Insomnia symptoms (never/rarely vs. usually)	129,270 European ancestry cases, 108,357 European ancestry controls	17,140 European ancestry cases, 61,850 European ancestry controls	4q22.1	MGC48628	rs1841625-G	0.431882	2E-8		1.02	[1.01-1.03]	Affymetrix [14661600] (imputed)	N
1281	chr4	91287476	91287477	rs1841625	30804566	Lane JM	2019-02-25	Nat Genet	Biological and clinical insights from genetics of insomnia symptoms.	Insomnia symptoms (never/rarely vs. sometimes/usually)	345,022 European ancestry cases, 108,357 European ancestry controls	17,140 European ancestry cases, 61,850 European ancestry controls	4q22.1	MGC48628	rs1841625-G	0.431882	7E-6		1.02	[1.01-1.03]	Affymetrix [14661600] (imputed)	N
1281	chr4	91313759	91313760	rs187829875	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference	1,254 whole genome sequenced European ancestry individuals, 3,074 whole genome sequenced individuals, 29,716 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 701 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,050 Mylopotamos (founder/genetic isolate) individuals, 883 Pomak (founder/genetic isolate) individuals	205,909 European ancestry individuals	4q22.1	CCSER1	rs187829875-T	0.9931	2E-6		0.4785	[0.28-0.68] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1282	chr4	91401610	91401611	rs187200046	23319000	Luykx JJ	2013-01-15	Mol Psychiatry	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA-5-HIAA Factor score)	up to 398 European ancestry individuals	NA	4q22.1	FAM190A	rs187200046-T		4E-6		0.2293	unit increase	Illumina [5767231] (imputed)	N
1282	chr4	91401610	91401611	rs187200046	23319000	Luykx JJ	2013-01-15	Mol Psychiatry	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA)	up to 398 European ancestry individuals	NA	4q22.1	FAM190A	rs187200046-T	NR	2E-6		0.2366	unit increase	Illumina [5767231] (imputed)	N
1283	chr4	91513256	91513257	rs115416376	33763119	Read RW	2021-03-02	Front Genet	Genome-Wide Identification of Rare and Common Variants Driving Triglyceride Levels in a Nevada Population.	Triglyceride levels	9,183 European ancestry individuals	35,321 European ancestry individuals	4q22.1		rs115416376-T	NR	1E-9		110.5	mg/dl increase	NR [5712318]	N
1283	chr4	91515264	91515265	rs17017235	25378659	Lemaitre RN	2014-11-06	J Lipid Res	Genetic loci associated with circulating levels of very long-chain saturated fatty acids.	Very long-chain saturated fatty acid levels (fatty acid 20:0)	10,129 European ancestry individuals	NA	4q22.1	MGC48628	rs17017235-T	NR	8E-6		4.473	[NR] Z score decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1283	chr4	91528926	91528927	rs28645201	23696881	Wood AR	2013-05-16	PLoS One	Imputation of variants from the 1000 Genomes Project modestly improves known associations and can identify low-frequency variant-phenotype associations undetected by HapMap based imputation.	Blood protein levels	up to 1,209 European ancestry individuals	NA	4q22.1	FAM190A	rs28645201-?	NR	1E-9	(Beta globulins (%))			Illumina [up to 10879115] (imputed)	N
1283	chr4	91556323	91556324	rs72661803	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	4q22.1		rs72661803-G	0.038324	3E-6		0.082631	[0.048-0.117] unit increase	Affymetrix [15580782] (imputed)	N
1283	chr4	91571501	91571502	rs4693244	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	4q22.1	Intergenic	rs4693244-A	0.7074	8E-9	(MTAG)	0.0105	[0.007-0.014] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1283	chr4	91575740	91575741	rs885210	31668963	Bay CP	2019-09-27	J Clin Densitom	Genome-Wide Association Analysis of Longitudinal Bone Mineral Content Data From the Iowa Bone Development Study.	Peak hip bone mineral content	190 women, 174 men	NA	4q22.1	NR	rs885210-C	0.32	3E-6	(Male)	4.64	[2.84-6.44] g increase	Illumina [509842]	N
1283	chr4	91588353	91588354	rs116405693	34601942	van Zuydam NR	2021-10-04	Circ Genom Precis Med	Genome-Wide Association Study of Peripheral Artery Disease.	Peripheral artery disease x diabetes status interaction	10,576 European ancestry cases, 445,736 European ancestry controls	NA	4q22.1		rs116405693-T	0.04	5E-7				Affymetrix, Illumina [NR] (imputed)	N
1283	chr4	91588353	91588354	rs116405693	34601942	van Zuydam NR	2021-10-04	Circ Genom Precis Med	Genome-Wide Association Study of Peripheral Artery Disease.	Peripheral artery disease in diabetes	3,846 Finnish ancestry cases, 28,881 Finnish ancestry controls, 3,846 non-Scandinavian ancestry cases, 28,881 non-Scandinavian ancestry controls, 3,846 British ancestry cases, 28,881 British ancestry controls	NA	4q22.1		rs116405693-T	0.04	3E-9		1.51	[1.32-1.74]	Affymetrix, Illumina [NR] (imputed)	N
1283	chr4	91590265	91590266	rs10516875	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	4q22.1	CCSER1	rs10516875-T	0.765336	7E-10		0.0147826	[0.01-0.0196] unit increase	NR [16516521] (imputed)	N
1284	chr4	91703240	91703241	rs17186106	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	4q22.1		rs17186106-T	0.1771	4E-9		0.0108	[0.0073-0.0143] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1284	chr4	91703240	91703241	rs17186106	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	4q22.1	Intergenic	rs17186106-T	0.1771	3E-9	(MTAG)	0.0102	[0.0069-0.0135] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1284	chr4	91720597	91720598	rs2123959	26528553	Davenport ER	2015-11-03	PLoS One	Genome-Wide Association Studies of the Human Gut Microbiota.	Gut microbiome composition (summer)	91 Hutterite individuals	NA	4q22.1	NR	rs2123959-?	NR	7E-6	(order_Selenomonadales)	1.031246	[0.6-1.46] unit decrease	Affymetrix [210924]	N
1284	chr4	91739241	91739242	rs1377913	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,963 Sub-Saharan African ancestry females, 3,931 Sub-Saharan African ancestry males	NA	4q22.1		rs1377913-T	0.576148	2E-6		0.0113009	[0.0062-0.0164] unit increase	Illumina [7666802] (imputed)	N
1284	chr4	91743766	91743767	rs56712335	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,963 Sub-Saharan African ancestry females	NA	4q22.1		rs56712335-C	0.591585	1E-6		0.0128588	[0.0077-0.018] unit increase	Illumina [13900000] (imputed)	N
1285	chr4	91768978	91768979	rs72879447	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q22.1	NR	rs72879447-T	0.01568	1E-8	(NDRG2)	0.07997	NR unit increase	Illumina [1671387] (imputed)	N
1285	chr4	91829968	91829969	rs79947031	33381925	Buchanan VL	2020-12-30	Pediatr Obes	Genome-wide association study identifying novel variant for fasting insulin and allelic heterogeneity in known glycemic loci in Chilean adolescents: The Santiago Longitudinal Study.	Fasting glucose	543 Chilean individuals	NA	4q22.1	CCSER1	rs79947031-C	0.11	3E-6		4.11	[2.38-5.84] unit increase	Illumina [NR] (imputed)	N
1286	chr4	91903466	91903467	rs1461596	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	4q22.1	Intergenic	rs1461596-?	NR	3E-6		1.881	[NR]	Affymetrix [492217] (imputed)	N
1286	chr4	91906746	91906746	rs200062414	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Smoking x traumatic event in childhood (sexually molested) interaction	127,766 European ancestry individuals	NA	4q22.1		rs200062414-?	NR	5E-9		1.367	[0.91-1.83] unit increase	Affymetrix [NR] (imputed)	N
1286	chr4	91911416	91911417	rs11727994	28235828	Traglia M	2017-04-03	G3 (Bethesda)	Independent Maternal and Fetal Genetic Effects on Midgestational Circulating Levels of Environmental Pollutants.	Midgestational circulating levels of PCBs	329 Hispanic mothers, 273 European ancestry mothers, 122 Asian ancestry mothers, 23 South Asian ancestry mothers, 21 African American mothers, 22 other ancestry mothers	NA	4q22.1	TMSB4XP8	rs11727994-?		2E-6	(PCB28)	0.34	[0.2-0.48] unit decrease	Affymetrix [629686]	N
1286	chr4	91913729	91913730	rs72665486	27363682	Mitchell JS	2016-07-01	Nat Commun	Genome-wide association study identifies multiple susceptibility loci for multiple myeloma.	Multiple myeloma	7,319 European ancestry cases, 234,385 European ancestry controls	2,547 European ancestry cases, 4,803 European ancestry controls	4q22.1	Intergenic	rs72665486-G	0.884	2E-6		1.14	[NR]	Illumina [at least 7182761] (imputed)	N
1286	chr4	91929774	91929775	rs62309831	28957384	Kim SK	2017-09-28	PLoS One	Two genetic loci associated with ankle injury.	Ankle injury	1,421 European ancestry cases, 154 Hispanic/Latino cases, 121 East Asian ancestry cases, 81,843 European ancestry controls, 8,406 Hispanic/Latino controls, 7,397 East Asian ancestry controls	NA	4q22.1	NR	rs62309831-A	NR	9E-7		1.1964		Affymetrix [8183964] (imputed)	N
1286	chr4	91942028	91942029	rs114594327	33607172	Nygaard M	2021-02-16	Mech Ageing Dev	Genome-wide association analysis of cognitive function in Danish long-lived individuals.	Cognitive function in longevity	490 Danish ancestry individuals	NA	4q22.1	CCSER1	rs114594327-T	0.0268	5E-6		7.955	[NR] unit increase	Illumina [4827900] (imputed)	N
1286	chr4	91945571	91945572	rs2870281	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	4q22.1	NR	rs2870281-C	0.469185	7E-10		0.04345595	[0.03-0.057] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1286	chr4	91945571	91945572	rs2870281	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	4q22.1		rs2870281-A	0.441	4E-9		0.0083	[0.0056-0.011] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1286	chr4	91954793	91954794	rs1531404	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	4q22.1	Intergenic	rs1531404-C	0.5715	3E-8	(MTAG)	0.0074	[0.0049-0.0099] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1286	chr4	91966318	91966319	rs10014892	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	4q22.1	NR	rs10014892-?	NR	6E-6				Affymetrix [NR]	N
1286	chr4	92003896	92003897	rs6532271	22952603	Hart AB	2012-08-28	PLoS One	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 10 individuals	NA	4q22.1	FAM190A	rs6532271-?	NR	3E-6	(SF7)			Affymetrix [5476100] (imputed)	N
1287	chr4	92039006	92039007	rs6855885	25192705	Du M	2014-09-05	Cancer Epidemiol Biomarkers Prev	No evidence of gene-calcium interactions from genome-wide analysis of colorectal cancer risk.	Colorectal cancer (calcium intake interaction)	9,006 European ancestry cases, 9,503 European ancestry controls	NA	4q22.1	FAM190A	rs6855885-A	0.5	2E-6	(Dietary calcium intake)	1.11	[1.06-1.16]	NR [~ 2700000] (imputed)	N
1287	chr4	92054972	92054973	rs2870298	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	4q22.1	MGC48628	rs2870298-?	NR	6E-6	(pyruvate)	0.19755715	[0.11-0.28] unit increase	Affymetrix [at least 2500000] (imputed)	N
1287	chr4	92087762	92087763	rs76610913	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	4q22.1	NR	rs76610913-?	NR	1E-9				Illumina [7760689] (imputed)	N
1287	chr4	92135676	92135677	rs72669292	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	4q22.1	RP11-763F8.1	rs72669292-G	0.0482220502692044	1E-6	(O_Rhodospirillales_RNT)	0.398034	[0.24-0.56] unit increase	Illumina [7711310] (imputed)	N
1288	chr4	92159829	92159830	rs1544017	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	4q22.1	MGC48628	rs1544017-?	NR	5E-6	(alanine)	0.20320787	[0.12-0.29] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1288	chr4	92172900	92172901	rs1534560	31073882	Plotnikov D	2019-05-09	Hum Genet	A commonly occurring genetic variant within the NPLOC4-TSPAN10-PDE6G gene cluster is associated with the risk of strabismus.	Strabismus	1,345 British ancestry cases, 65,349 British ancestry controls	116 cases, 5,084 controls	4q22.1	NR	rs1534560-T	0.02	4E-6	(EA)	1.72	[1.37-2.17]	Affymetrix [7469170] (imputed)	N
1288	chr4	92250807	92250808	rs553908921	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Chronic kidney disease	2,044 European ancestry cases, 65,575 European ancestry controls	NA	4q22.1	CCSER1	rs553908921-T	9.19726686569349E-4	2E-8		4.312875	[2.8-5.82] unit increase	Illumina [24961484] (imputed)	N
1288	chr4	92256862	92256865	rs534356339	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	4q22.1	CCSER1	rs534356339-A	0.0061	1E-6		0.3385	[0.2-0.47] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1289	chr4	92283770	92283771	rs4128705	24529757	Xie T	2014-01-17	Neurobiol Aging	Genome-wide association study combining pathway analysis for typical sporadic amyotrophic lateral sclerosis in Chinese Han populations.	Amyotrophic lateral sclerosis (sporadic)	250 Han Chinese ancestry cases, 250 Han Chinese ancestry controls	NA	4q22.1	KIAA1680	rs4128705-?		6E-6				Illumina [859311]	N
1289	chr4	92368345	92368346	rs1922233	26528553	Davenport ER	2015-11-03	PLoS One	Genome-Wide Association Studies of the Human Gut Microbiota.	Gut microbiome composition (summer and winter)	127 Hutterite individuals	NA	4q22.1	NR	rs1922233-?		9E-7	(order_Selenomonadales)	0.9058323	[0.56-1.25] unit decrease	Affymetrix [212153]	N
1290	chr4	92412576	92412577	rs12644077	28115739	Smith AH	2017-01-24	Mol Psychiatry	Genome-wide association study of therapeutic opioid dosing identifies a novel locus upstream of OPRM1.	Methadone dose in opioid dependence	1,027 European American cases, 383 African American cases	NA	4q22.1	CCSER1	rs12644077-G	0.2912114897760468	3E-6	(EA)	0.2268	[0.13-0.32] unit decrease	Illumina [at least 988306] (imputed)	N
1290	chr4	92415528	92415529	rs11933531	23725790	Renteria ME	2013-06-03	Twin Res Hum Genet	GWAS of DNA methylation variation within imprinting control regions suggests parent-of-origin association.	DNA methylation (variation)	256 European ancestry individuals	384 European ancestry individuals	4q22.1	FAM190A	rs11933531-A	0.04	3E-8	(KvDMR)			Illumina [515966]	N
1290	chr4	92494465	92494466	rs6532321	30279531	Baselmans BML	2018-10-02	Sci Rep	A genetic perspective on the relationship between eudaimonic -and hedonic well-being.	Eudaimonic well-being	108,154 British ancestry individuals	NA	4q22.1	NR	rs6532321-C	0.52807	4E-6		4.63103	[NR] z score decrease	Affymetrix [~ 8600000] (imputed)	N
1290	chr4	92499172	92499173	rs72886316	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	4q22.1		rs72886316-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1290	chr4	92533224	92533225	rs35531607	30846698	Dashti HS	2019-03-07	Nat Commun	Genome-wide association study identifies genetic loci for self-reported habitual sleep duration supported by accelerometer-derived estimates.	Sleep duration	446,118 European ancestry individuals	47,180  adults, 10,554 children or adolescents	4q22.1	NR	rs35531607-C	NR	2E-8		0.708	unit increase	Affymetrix [14661600] (imputed)	N
1291	chr4	92557495	92557496	rs17285646	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Sleep duration	384,317 European ancestry individuals	NA	4q22.1		rs17285646-A	0.4764	2E-8		0.01379	[0.009-0.0186] unit increase	Affymetrix, Illumina [10862567] (imputed)	N
1291	chr4	92567441	92567442	rs10470887	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Ease of getting up in the morning	385,949 European ancestry individuals	NA	4q22.1	NR	rs10470887-G	0.4874	4E-8		0.0095	[0.0062-0.0128] unit decrease	Affymetrix, Illumina [10862568] (imputed)	N
1291	chr4	92599430	92599431	rs28824216	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	4q22.1	CCSER1	rs28824216-C	0.978208	3E-8		0.03756	[0.024-0.051] unit decrease	Affymetrix [NR] (imputed)	N
1291	chr4	92604108	92604109	rs73837957	30468137	Fabbri C	2018-11-23	Br J Psychiatry	Genome-wide association study of treatment-resistance in depression and meta-analysis of three independent samples.	Treatment resistant depression	1,378 European ancestry treatment resistant cases, 934 European ancestry responders to first treatment	NA	4q22.1	CCSER1	rs73837957-A	0.15	2E-6		2.73	[1.81-4.11]	Affymetrix, Illumina [7000000] (imputed)	N
1291	chr4	92604108	92604109	rs73837957	30468137	Fabbri C	2018-11-23	Br J Psychiatry	Genome-wide association study of treatment-resistance in depression and meta-analysis of three independent samples.	Depressive symptom improvement	1,378 European ancestry treatment resistant cases, 934 European ancestry responders to first treatment	NA	4q22.1	CCSER1	rs73837957-A	0.15	1E-6		0.12	[0.081-0.159] unit decrease	Affymetrix, Illumina [7000000] (imputed)	N
1291	chr4	92638199	92638200	rs9884765	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	4q22.1	NR	rs9884765-C	0.3701	5E-7	(EA)	0.0353	[0.022-0.049] unit increase	Illumina [~ 11800000] (imputed)	N
1292	chr4	92689258	92689259	rs4414922	28173075	Niu N	2016-09-11	Hum Mol Genet	Metformin pharmacogenomics: a genome-wide association study to identify genetic and epigenetic biomarkers involved in metformin anticancer response using human lymphoblastoid cell lines.	Response to metformin (IC50)	up to 96 African American lymphoblastoid cell lines, up to 96 Han Chinese American lymphoblastoid cell lines, up to 96 European ancestry lymphoblastoid cell lines	NA	4q22.1	LOC72839, LOC133083	rs4414922-?	NR	9E-6			NR	Affymetrix, Illumina [~ 6700000] (imputed)	N
1293	chr4	92847035	92847036	rs190999252	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental extreme longevity (95 years and older)	1,339 middle-aged British cases, 40,934 middle-aged British controls	NA	4q22.1	NR	rs190999252-?	NR	7E-6		0.01769	[0.01-0.0254] unit decrease	Affymetrix [9658292] (imputed)	N
1293	chr4	92917214	92917215	rs6853847	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	4q22.1	NR	rs6853847-C	0.0304513777282851	2E-6	(IGP24)	0.4788	[0.28-0.67] unit decrease	Illumina [~ 2500000] (imputed)	N
1293	chr4	92917214	92917215	rs6853847	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	4q22.1	NR	rs6853847-C	0.0304378588601959	5E-6	(IGP26)	0.4557	[0.26-0.65] unit decrease	Illumina [~ 2500000] (imputed)	N
1295	chr4	93101087	93101088	rs140671052	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	4q22.1	Intergenic	rs140671052-G	0.996	5E-6	(AA)	0.383	NR unit increase	Illumina [NR] (imputed)	N
1296	chr4	93301681	93301682	rs13110899	30456828	Khramtsova EA	2018-11-20	Am J Med Genet B Neuropsychiatr Genet	Sex differences in the genetic architecture of obsessive-compulsive disorder.	Obsessive-compulsive disorder	1,249 European ancestry male cases, 2,789 European ancestry male controls, 1,525 European ancestry female cases, 4,307 European ancestry female controls	NA	4q22.1	GRID2	rs13110899-?		3E-6	(female)	0.225	[0.13-0.32] unit decrease	NR [~ 5500000] (imputed)	N
1296	chr4	93321026	93321027	rs7666831	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	4q22.1	GRID2	rs7666831-A	0.0040	8E-6	(Free T3 )	0.02	[NR] pg/mL increase	Illumina [899892]	N
1297	chr4	93452090	93452091	rs6532374	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-12p70 levels	8,270 Finnish ancestry individuals	NA	4q22.1	NR	rs6532374-C		8E-6		0.101	[0.057-0.145] SD units increase	NR [10700000] (imputed)	N
1298	chr4	93505195	93505196	rs17019635	33232274	Mohammadnejad A	2020-11-24	Aging (Albany NY)	Generalized correlation coefficient for genome-wide association analysis of cognitive ability in twins.	Cognitive function (generalized correlation coefficient)	278 Chinese ancestry dizygotic twins	NA	4q22.1	NR	rs17019635-?	NR	3E-9			[NR]	Illumina [5432814] (imputed)	N
1299	chr4	93615725	93615726	rs5860287	33531474	Burton CL	2021-02-02	Transl Psychiatry	Genome-wide association study of pediatric obsessive-compulsive traits: shared genetic risk between traits and disorder.	Obsessive-compulsive traits	5,018 European ancestry children and adolescents	NA	4q22.1	GRID2	rs5860287-?	NR	2E-6		0.108	[0.063-0.153] unit increase	Illumina [7870334] (imputed)	N
1299	chr4	93704689	93704690	rs145688504	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.1	GRID2	rs145688504-T	0.999	5E-6	(AA)	0.412	unit increase	Illumina [NR] (imputed)	N
1301	chr4	93940965	93940966	rs11945434	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	4q22.2	ATOH1	rs11945434-?	NR	2E-6	(ribose 5 P; ribulose 5 P)	0.36950228	[0.22-0.52] unit increase	Affymetrix [at least 2500000] (imputed)	N
1301	chr4	93956434	93956435	rs1840717	30456828	Khramtsova EA	2018-11-20	Am J Med Genet B Neuropsychiatr Genet	Sex differences in the genetic architecture of obsessive-compulsive disorder.	Obsessive-compulsive disorder	1,249 European ancestry male cases, 2,789 European ancestry male controls, 1,525 European ancestry female cases, 4,307 European ancestry female controls	NA	4q22.2	GRID2	rs1840717-?		6E-6	(female)	0.205	[0.12-0.29] unit decrease	NR [~ 5500000] (imputed)	N
1302	chr4	94006768	94006769	rs117802898	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.2	GRID2	rs117802898-C	0.998	3E-6	(AA)	0.181	unit increase	Illumina [NR] (imputed)	N
1302	chr4	94013990	94013991	rs143324395	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.2	GRID2	rs143324395-G	0.997	3E-6	(AA)	0.18	unit increase	Illumina [NR] (imputed)	N
1302	chr4	94015688	94015689	rs117932668	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.2	GRID2	rs117932668-A	0.997	4E-6	(AA)	0.177	unit increase	Illumina [NR] (imputed)	N
1302	chr4	94034682	94034683	rs3843409	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking initiation	842,717 European ancestry individuals	NA	4q22.2	GRID2	rs3843409-T		2E-8		1.02	[NR]	Affymetrix [up to 79000000] (imputed)	N
1302	chr4	94052853	94052854	rs1160685	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	4q22.2	NR	rs1160685-G	0.45	6E-13		0.0077966	[0.0057-0.0099] unit increase	NR [9732723] (imputed)	N
1302	chr4	94052853	94052854	rs1160685	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	4q22.2	NR	rs1160685-G	0.45	2E-9		0.015301715	[0.01-0.02] unit increase	NR [~ 10000000] (imputed)	N
1302	chr4	94075843	94075844	rs1503212	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Coffee consumption	335,909 European ancestry individuals	39,924 European ancestry individuals	4q22.2	GRID2	rs1503212-A	0.4239	3E-6		0.007	[0.0041-0.0099] unit increase	Affymetrix [~ 7740000] (imputed)	N
1302	chr4	94076173	94076174	rs2870682	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	6-month creatinine clearance change response to tenofovir treatment in HIV infection (treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	4q22.2	NR	rs2870682-?		6E-6	(African)			Illumina [~ 5140000] (imputed)	N
1304	chr4	94358022	94358023	rs10022753	32944759	Deshmukh HA	2020-09-18	J Clin Endocrinol Metab	Genome-Wide Association Analysis of Pancreatic Beta Cell Glucose Sensitivity.	Pancreatic beta-cell glucose sensitivity	3,017 European ancestry individuals	2,689 European ancestry individuals	4q22.2	GRID2	rs10022753-A	NR	4E-7		5.088	NR z score decrease	Illumina [8978282] (imputed)	N
1305	chr4	94407840	94407841	rs10014552	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	4q22.2	NR	rs10014552-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
1305	chr4	94411605	94411606	rs2870710	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	4q22.2	NA	rs2870710-C	0.8057	9E-13		0.0155	[0.011-0.02] unit increase	NR [~ 27400000] (imputed)	N
1305	chr4	94415513	94415514	rs3857066	34838041	Naderi E	2021-11-27	J Transl Med	A two-stage genome-wide association study of radiation-induced acute toxicity in head and neck cancer.	radiation-induced toxicity (physician-rated acute dysphagia)	860 Dutch ancestry individuals	246 Dutch ancestry individuals	4q22.2		rs3857066-G	NR	1E-6		0.11694031	[0.07-0.164] increase	Illumina [6334277] (imputed)	N
1305	chr4	94423109	94423110	rs7655333	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	4q22.2	NR	rs7655333-?	NR	9E-8		5.349	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1305	chr4	94431543	94431544	rs4693327	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	4q22.2		rs4693327-C	NR	2E-10		0.0124	[0.0087-0.0161] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1305	chr4	94431543	94431544	rs4693327	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	4q22.2		rs4693327-C	NR	4E-10		0.014	[0.0097-0.0183] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1305	chr4	94431543	94431544	rs4693327	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	4q22.2		rs4693327-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1305	chr4	94439410	94439411	rs28715540	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	4q22.2	Intergenic	rs28715540-T	0.2624	3E-8	(MTAG)	0.0083	[0.0054-0.0112] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1306	chr4	94543232	94543233	rs12503522	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	4q22.2		rs12503522-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1306	chr4	94543232	94543233	rs12503522	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	4q22.2		rs12503522-T	0.282	4E-13		0.0113	[0.0082-0.0144] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1306	chr4	94543232	94543233	rs12503522	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	4q22.2	Intergenic	rs12503522-T	0.282	4E-14	(MTAG)	0.011	[0.0081-0.0139] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1306	chr4	94550449	94550450	rs1435479	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	4q22.2	NR	rs1435479-T	0.28748	6E-9	(Conditioned on chr4:94052854)	0.01639046	[0.011-0.022] unit increase	NR [~ 10000000] (imputed)	N
1306	chr4	94557685	94557686	rs10516930	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	4q22.2	NR	rs10516930-T	0.287	1E-10		0.00767667	[0.0053-0.01] unit increase	NR [9732723] (imputed)	N
1306	chr4	94579510	94579511	rs1972863	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	4q22.2	Intergenic	rs1972863-A	0.3062	4E-8	(MTAG)	0.0098	[0.0063-0.0133] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1306	chr4	94579510	94579511	rs1972863	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	4q22.2	Intergenic	rs1972863-A	0.3041	9E-10	(MTAG)	0.0152	[0.01-0.02] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1306	chr4	94579510	94579511	rs1972863	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	4q22.2	GRID2	rs1972863-A	NR	4E-8		0.018128244	[0.012-0.025] unit decrease	Affymetrix [NR]	N
1306	chr4	94579639	94579640	rs1972860	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	4q22.2	NR	rs1972860-A	NR	2E-9		5.991	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1306	chr4	94589101	94589102	rs78160260	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Non-melanoma skin cancer	5,912 European ancestry cases, 181,740 European ancestry controls		4q22.2	NR	rs78160260-T	NR	5E-6		1.389493	[1.21-1.6]	Affymetrix [5734850] (imputed)	N
1307	chr4	94658800	94658801	rs115090697	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	4q22.2	NR	rs115090697-?	NR	9E-6		0.791	[0.45-1.13] unit increase	Illumina [at least 560000] (imputed)	N
1307	chr4	94731640	94731641	rs993775	34684477	Fujihara K	2021-09-30	Nutrients	Carrot Consumption Frequency Associated with Reduced BMI and Obesity through the SNP Intermediary rs4445711.	body mass index x broccoli consumption interaction	6,495 Japanese ancestry males, 5,730 Japanese ancestry females	NA	4q22.2		rs993775-G	NR	2E-6		0.1944	[0.11-0.27] unit decrease	Illumina [285387]	N
1307	chr4	94756156	94756157	rs7679055	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin I concentration	1,606 African American individuals	NA	4q22.2		rs7679055-?	NR	8E-7		0.23	[0.14-0.32] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1307	chr4	94759034	94759035	rs76049629	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	4q22.2	NR	rs76049629-G	NR	3E-6		1.0869565	[NR]	Illumina [7158791] (imputed)	N
1307	chr4	94761911	94761912	rs4279170	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	4q22.2	GRID2	rs4279170-?	NR	3E-6	(sucrose)	0.3111401	[0.18-0.44] unit increase	Affymetrix [at least 2500000] (imputed)	N
1308	chr4	94864576	94864577	rs2578135	33692830	Indencleef K	2021-02-22	Front Genet	The Intersection of the Genetic Architectures of Orofacial Clefts and Normal Facial Variation.	Facial morphology traits (59 NSCL/P endophenotypic segments)	8,246 European ancestry individuals	NA	4q22.2	NR	rs2578135-?	NR	2E-8	(Quadrant III (Mandible), Segment 53)	0.021175252	NR unit increase	NR [7417619] (imputed)	N
1308	chr4	94887030	94887031	rs13130787	23266556	Peters U	2012-12-21	Gastroenterology	Identification of Genetic Susceptibility Loci for Colorectal Tumors in a Genome-Wide Meta-analysis.	Colorectal cancer	12,696 European ancestry colorectal tumor cases, 15,113 European ancestry controls	958 European ancestry colorectal tumor cases, 909 European ancestry controls, up to 2,098 East Asian ancestry colorectal tumor cases, up to 5,749 East Asian ancestry controls	4q22.2	intergenic	rs13130787-?	0.43	3E-7		1.09	[1.06-1.13]	Affymetrix, Illumina [2708280] (imputed)	N
1308	chr4	94889282	94889283	rs2578179	32180562	Kulyte A	2020-01-25	Mol Metab	Genome-wide association study of adipocyte lipolysis in the GENetics of adipocyte lipolysis (GENiAL) cohort.	Spontaneous adipocyte lipolysis	856 European ancestry individuals	NA	4q22.2	NR	rs2578179-G	0.783684	8E-6		0.095	[0.054-0.136] unit decrease	NR [9260588] (imputed)	N
1309	chr4	94938617	94938618	rs13149359	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	4q22.2	ATOH1, SMARCAD1, BMPR1B	rs13149359-A	0.3663	1E-8		1.05	[1.03-1.07]	Affymetrix, Illumina [16900397] (imputed)	N
1309	chr4	94949179	94949180	rs280067	31206233	Real LM	2019-06-17	Liver Int	A genome-wide association study in low susceptibility to hepatitis C virus infection (GEHEP012 Study).	Low susceptibility to hepatitis C infection	27 Spanish ancestry uninfected high-risk individuals, 804 Spanish ancestry infected individuals	NA	4q22.2	SMARCAD1	rs280067-T	0.5068	5E-6		4.280822	[2.17-8.33]	Affymetrix [7675561] (imputed)	N
1309	chr4	94959211	94959212	rs17021300	31649266	Gallagher CS	2019-10-24	Nat Commun	Genome-wide association and epidemiological analyses reveal common genetic origins between uterine leiomyomata and endometriosis.	Uterine fibroids	20,406 European ancestry cases, 223,918 European ancestry controls	15,068 European ancestry cases, 43,587 European ancestry controls	4q22.2		rs17021300-A	0.0431	7E-6	(conditional)	0.0803	[0.041-0.12] unit decrease	Affymetrix, Illumina [8662096] (imputed)	N
1309	chr4	94990660	94990661	rs28678108	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	4q22.2	NR	rs28678108-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
1309	chr4	94990660	94990661	rs28678108	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	4q22.2		rs28678108-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1309	chr4	94995977	94995978	rs7658243	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	4q22.2	SMARCAD1	rs7658243-A	0.5768	7E-9		0.002	[0.0014-0.0026] unit decrease	Affymetrix [15275733] (imputed)	N
1309	chr4	95006098	95006099	rs1848793	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	4q22.2	SMARCAD1	rs1848793-?		2E-8				NR [7428630] (imputed)	N
1309	chr4	95008270	95008271	rs11936789	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	4q22.2	NA	rs11936789-C		1E-8		0.0108426	[0.0071-0.0146] unit increase	Illumina [13288253] (imputed)	N
1309	chr4	95012683	95012684	rs1904096	28566273	Scott RA	2017-05-31	Diabetes	An Expanded Genome-Wide Association Study of Type 2 Diabetes in Europeans.	Type 2 diabetes	up to 26,676 European ancestry cases, up to 132,532 European ancestry controls	14,545 European ancestry cases, 38,994 European ancestry controls	4q22.2	NR	rs1904096-A	0.484	2E-6		1.0526316	[1.03-1.08]	Affymetrix, Illumina [at least 11579618] (imputed)	N
1309	chr4	95026433	95026434	rs3857067	24952745	Arking DE	2014-06-22	Nat Genet	Genetic association study of QT interval highlights role for calcium signaling pathways in myocardial repolarization.	QT interval	Up to 70,389 European ancestry individuals, up to 672 Orcadian individuals	Up to 33,316 European ancestry individuals	4q22.2	SMARCAD1	rs3857067-A	0.457	1E-9		0.51	[0.35-0.67] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1310	chr4	95078817	95078818	rs111717717	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	4q22.2	NR	rs111717717-C	0.4777	8E-17				NR [9056863] (imputed)	N
1310	chr4	95091910	95091911	rs6821438	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	4q22.2	NR	rs6821438-G	0.4691	4E-10		0.0289	[0.02-0.038] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
1310	chr4	95091910	95091911	rs6821438	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	4q22.2	SMARCAD1	rs6821438-A	0.5342	4E-11		1.04	[1.03-1.06]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1310	chr4	95093854	95093855	rs7678054	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	4q22.2	NA	rs7678054-A	0.4788	5E-9		0.0099	[0.0066-0.0132] unit decrease	NR [~ 27400000] (imputed)	N
1310	chr4	95114571	95114572	rs28408270	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	4q22.2	NR	rs28408270-G	0.4896	1E-9		0.0239	[0.016-0.032] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1310	chr4	95114983	95114984	rs28660345	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	4q22.2	NR	rs28660345-A	0.184	8E-39	(Hematopoietic prostaglandin D synthase, HPGDS.12549.33.3)	0.41	[0.35-0.47] unit increase	Affymetrix [10572788] (imputed)	N
1310	chr4	95124901	95124902	rs6857003	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HPGDS	5,364 Icelandic ancestry individuals	NA	4q22.3		rs6857003-A	0.1945	1E-50		0.357133	[0.31-0.4] unit increase	Illumina [7506463] (imputed)	N
1310	chr4	95129237	95129238	rs2276910	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	4q22.3		rs2276910-T	0.43	2E-16		8.24	z score increase	Affymetrix [9061022] (imputed)	N
1310	chr4	95129237	95129238	rs2276910	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	4q22.3	NR	rs2276910-T	0.4122	1E-13				NR [9056863] (imputed)	N
1310	chr4	95134691	95134692	rs10013456	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	4q22.3	SMARCAD1	rs10013456-A	0.813429	7E-29		0.0263959	[0.022-0.031] unit decrease	NR [13737936] (imputed)	N
1310	chr4	95134691	95134692	rs10013456	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	4q22.3		rs10013456-?	NR	4E-28				NR [~ 8900000] (imputed)	N
1310	chr4	95134691	95134692	rs10013456	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	4q22.3		rs10013456-?	NR	1E-30		0.0292812	[0.024-0.035] unit decrease	Affymetrix [20259828] (imputed)	N
1310	chr4	95134691	95134692	rs10013456	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	4q22.3	SMARCAD1	rs10013456-A	0.807623	5E-11		0.0283936	[0.02-0.037] unit decrease	NR [17166351] (imputed)	N
1310	chr4	95134691	95134692	rs10013456	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	4q22.3	SMARCAD1	rs10013456-A	0.806753	2E-6	(women)	0.0269393	[0.015-0.038] unit decrease	NR [17166351] (imputed)	N
1310	chr4	95136511	95136512	rs11943926	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	4q22.3		rs11943926-A	0.46	3E-18		8.71	z score increase	Affymetrix [9061022] (imputed)	N
1310	chr4	95146134	95146135	rs11097407	20889312	Wang KS	2010-10-01	Schizophr Res	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	4q22.3	NR	rs11097407-?	NR	4E-6		1.2498	[NR]	Affymetrix [722112]	N
1310	chr4	95149318	95149319	rs2632412	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	4q22.3		rs2632412-G	0.43	6E-15		7.81	z score increase	Affymetrix [9061022] (imputed)	N
1310	chr4	95153348	95153349	rs3106136	22864933	O'Donnell PH	2012-01-03	Cancer	Identification of novel germline polymorphisms governing capecitabine sensitivity.	Capecitabine sensitivity	Up to 84 East Asian ancestry lymphoblastoid cell lines, up to 164 European ancestry lymphoblastoid cell lines, up to 173 African ancestry lymphoblastoid cell lines, up to 82 African American lymphoblastoid cell lines	NA	4q22.3	SMARCAD1	rs3106136-?	NR	7E-6				NR [~ 2000000]	N
1311	chr4	95158649	95158649	rs34166467	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	4q22.3		rs34166467-?	NR	6E-22		0.0198763	[0.016-0.024] unit decrease	Affymetrix [20259828] (imputed)	N
1311	chr4	95175868	95175869	rs28733161	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	4q22.3		rs28733161-?	NR	5E-30		0.0298387	[0.024-0.035] unit decrease	Affymetrix [20259828] (imputed)	N
1311	chr4	95207687	95207688	rs13135934	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	4q22.3	SMARCAD1	rs13135934-C	0.4	1E-10		0.03	[0.02-0.04] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
1311	chr4	95224811	95224812	rs17021463	28604732	Wang Z	2017-06-12	Nat Genet	Meta-analysis of five genome-wide association studies identifies multiple new loci associated with testicular germ cell tumor.	Testicular germ cell tumor	3,558 European ancestry cases, 13,970 European ancestry controls	NA	4q22.3	SMARCAD1, HPGDS	rs17021463-G	0.55	1E-6		1.1494253	[1.09-1.22]	Illumina [9210350] (imputed)	N
1311	chr4	95224811	95224812	rs17021463	28604728	Litchfield K	2017-06-12	Nat Genet	Identification of 19 new risk loci and potential regulatory mechanisms influencing susceptibility to testicular germ cell tumor.	Testicular germ cell tumor	5,518 European ancestry cases, 19,055 European ancestry controls	1,801 European ancestry cases, 4,027 European ancestry controls	4q22.3	SMARCAD1, HPGDS	rs17021463-G	0.43	3E-8		1.14	[1.10-1.19]	Illumina [at least 371504] (imputed)	N
1311	chr4	95224811	95224812	rs17021463	23666239	Chung CC	2013-05-12	Nat Genet	Meta-analysis identifies four new loci associated with testicular germ cell tumor.	Testicular germ cell tumor	582 European ancestry male cases, 1,056 European ancestry male controls	3,560 European ancestry male cases, 8,510 European ancestry male controls	4q22.3	SMARCAD1, HPGDS	rs17021463-T	0.42	1E-8		1.19	[1.12-1.26]	Illumina [NR]	N
1311	chr4	95227900	95227901	rs767657	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (age at voice breaking MTAG)	205,354 European ancestry individuals	NA	4q22.3		rs767657-T	NR	2E-11		0.022121442	[0.016-0.029] years increase	NR [7400000] (imputed)	N
1311	chr4	95231996	95231997	rs4693382	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HPGDS	5,364 Icelandic ancestry individuals	NA	4q22.3		rs4693382-T	0.3511	5E-104		0.415948	[0.38-0.45] unit decrease	Illumina [7506463] (imputed)	N
1311	chr4	95245726	95245727	rs115941662	34964454	Gentiluomo M	2021-11-23	Hum Mol Genet	Genome-wide association study of mitochondrial copy number.	Mitochondrial DNA copy number	6,836 European ancestry individuals	NA	4q22.3	NR	rs115941662-G	0.096	4E-7		0.08	[0.05-0.11] unit decrease	Illumina [6374524] (imputed)	N
1311	chr4	95260300	95260301	rs11097414	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q22.3	HPGDS	rs11097414-A	0.3571875	4E-59	(HPGDS, 12549_33_3)	0.40523234	[0.36-0.45] unit decrease	Illumina [> 1000000] (imputed)	N
1311	chr4	95265821	95265822	rs7438414	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	4q22.3		rs7438414-?	NR	2E-18				NR [~ 8900000] (imputed)	N
1311	chr4	95266203	95266204	rs1965049	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	4q22.3	HPGDS	rs1965049-G	0.621	1E-71	(Hematopoietic prostaglandin D synthase, HPGDS.12549.33.3)	0.44	[0.4-0.48] unit increase	Affymetrix [10572788] (imputed)	N
1311	chr4	95267346	95267347	rs72665697	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HPGDS	5,364 Icelandic ancestry individuals	NA	4q22.3		rs72665697-G	0.03554	2E-113		1.12415	[1.03-1.22] unit decrease	Illumina [7506463] (imputed)	N
1311	chr4	95267346	95267347	rs72665697	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	4q22.3	NR	rs72665697-G	0.038	3E-60	(Hematopoietic prostaglandin D synthase, HPGDS.12549.33.3)	1.04	[0.92-1.16] unit decrease	Affymetrix [10572788] (imputed)	N
1312	chr4	95298846	95298847	rs12108275	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q22.3	NR	rs12108275-T	0.807194	6E-21				Affymetrix, Illumina [17210439] (imputed)	N
1312	chr4	95321098	95321099	rs17377951	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	4q22.3	NR	rs17377951-C	0.797279	3E-23		0.023853	[0.019-0.029] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1312	chr4	95324967	95324968	rs7694000	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	4q22.3	PDLIM5	rs7694000-A	0.5374	4E-10		0.0954	[0.065-0.125] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1312	chr4	95412691	95412692	rs3805301	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	4q22.3	PDLIM5	rs3805301-A	0.202519	3E-16		0.02309045	[0.018-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
1313	chr4	95455258	95455259	rs11731606	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	4q22.3	PDLIM5	rs11731606-T	0.2237	3E-9		0.0259829	[0.017-0.035] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1313	chr4	95476718	95476719	rs2452591	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Lewy body disease	up to 3,526 individuals	NA	4q22.3	PDLIM5	rs2452591-A	0.3832	8E-6	(Ordinal I)	0.2693	[0.15-0.39] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1313	chr4	95494527	95494528	rs200495769	27114598	Liu C	2016-04-25	J Clin Oncol	Clinical and Genetic Risk Factors for Acute Pancreatitis in Patients With Acute Lymphoblastic Leukemia.	Asparaginase-induced acute pancreatitis in acute lymphoblastic leukemia (onset time)	46 European ancestry cases with pancreatitis, 3,023 European ancestry cases without pancreatitis, 11 Black cases with pancreatitis, 339 Black cases without pancreatitis, 46 Hispanic cases with pancreatitis, 1,131 Hispanic cases without pancreatitis, 1 Asian ancestry case with pancreatitis, 98 Asian ancestry cases without pancreatitis, 13 cases with with pancreatitis, 477 cases without pancreatitis	NA	4q22.3	PDLIM5	rs200495769-T	2.0E-4	3E-7		5.7		Affymetrix [at least 751455]	N
1313	chr4	95495907	95495908	rs2452009	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	4q22.3	PDLIM5	rs2452009-A	0.700493	6E-9		1.05	[1.03-1.07]	NR [8126035] (imputed)	N
1313	chr4	95496881	95496882	rs2452600	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	4q22.3		rs2452600-T	0.312	2E-15		0.13799044	[0.1-0.17] mmHg decrease	Affymetrix, Illumina [242866] (imputed)	N
1313	chr4	95496881	95496882	rs2452600	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	4q22.3	PDLIM5	rs2452600-T	0.3075	1E-7		0.0365	[0.023-0.05] unit decrease	NR [8041861] (imputed)	N
1313	chr4	95501165	95501166	rs4699299	31649266	Gallagher CS	2019-10-24	Nat Commun	Genome-wide association and epidemiological analyses reveal common genetic origins between uterine leiomyomata and endometriosis.	Uterine fibroids	20,406 European ancestry cases, 223,918 European ancestry controls	15,068 European ancestry cases, 43,587 European ancestry controls	4q22.3	PDLIM5	rs4699299-T	0.69	5E-8		1.05	[1.03-1.07]	Affymetrix, Illumina [8662096] (imputed)	N
1313	chr4	95501165	95501166	rs4699299	31649266	Gallagher CS	2019-10-24	Nat Commun	Genome-wide association and epidemiological analyses reveal common genetic origins between uterine leiomyomata and endometriosis.	Uterine fibroids	20,406 European ancestry cases, 223,918 European ancestry controls	15,068 European ancestry cases, 43,587 European ancestry controls	4q22.3		rs4699299-T	0.6903	5E-8		0.0477	[0.031-0.065] unit decrease	Affymetrix, Illumina [8662096] (imputed)	N
1313	chr4	95506213	95506214	rs2172448	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	4q22.3	PDLIM5	rs2172448-A	0.55	9E-9		0.37	[0.25-0.49] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1313	chr4	95506213	95506214	rs2172448	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	4q22.3	PDLIM5	rs2172448-A	0.5494	6E-9		0.3913	[0.26-0.52] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1313	chr4	95509644	95509645	rs60063444	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	4q22.3	PDLIM5	rs60063444-C	0.601929	4E-8	(12 ms)	0.0313071	[0.02-0.043] unit decrease	Affymetrix [10000000] (imputed)	N
1313	chr4	95514608	95514609	rs12500426	33293427	Emami NC	2020-12-08	Cancer Res	A large-scale association study detects novel rare variants, risk genes, functional elements, and polygenic architecture of prostate cancer susceptibility.	Prostate cancer	14,113 European ancestry cases, 194,140 European ancestry controls	NA	4q22.3	NR	rs12500426-A	NR	6E-9		1.09	NR	Affymetrix [at least 232408] (imputed)	N
1313	chr4	95514608	95514609	rs12500426	19767753	Eeles RA	2009-09-20	Nat Genet	Identification of seven new prostate cancer susceptibility loci through a genome-wide association study.	Prostate cancer	1,854 European ancestry cases, 1,894 European ancestry controls	19,879 cases and 18,761 controls of European, East Asian, African American, Latino, and Hawaiian ancestry	4q22.3	PDLIM5	rs12500426-?	0.46	1E-11		1.08	[1.05-1.12]	Illumina [541129]	N
1313	chr4	95516515	95516516	rs17336353	25089948	Theusch E	2014-10-01	Pharmacogenet Genomics	Ancestry and other genetic associations with plasma PCSK9 response to simvastatin.	Response to simvastatin treatment (PCSK9 protein level change)	562 European ancestry individuals	287 African American individuals	4q22.3	PDLIM5	rs17336353-G	0.19	5E-6	(EA)	0.151	[NR] unit increase	Illumina [570422]	N
1313	chr4	95530618	95530619	rs752665641	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	4q22.3	PDLIM5	rs752665641-A	0.9989	9E-6		0.8641	[0.48-1.25] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1313	chr4	95544717	95544718	rs6853490	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Prostate cancer	11,599 European ancestry cases, 199,628 European ancestry controls, 5,672 East Asian ancestry cases, 84,660 East Asian ancestry controls	NA	4q22.3		rs6853490-G	NR	6E-14		0.09	[0.066-0.114] unit increase	Affymetrix, Illumina [25775424] (imputed)	N
1313	chr4	95544717	95544718	rs6853490	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 91,972 European ancestry controls	6,852 European ancestry cases, 193,117 European ancestry controls	4q22.3	NR	rs6853490-G	0.422613792	3E-12		1.1275649	[1.09-1.17]	Affymetrix, Illumina [20400945] (imputed)	N
1313	chr4	95544717	95544718	rs6853490	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	4q22.3	NR	rs6853490-G	NR	5E-29		1.077	[1.06-1.09]	Affymetrix, Illumina [29235255] (imputed)	N
1313	chr4	95544717	95544718	rs6853490	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Prostate cancer	10,792 European ancestry cases, 410,350 European ancestry controls	NA	4q22.3		rs6853490-G	NR	1E-13		1.1150758	NR	Affymetrix [7846216] (imputed)	N
1313	chr4	95544717	95544718	rs6853490	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	4q22.3		rs6853490-G	NR	5E-10		1.0964912	[1.06-1.13]	Affymetrix [7846216] (imputed)	N
1314	chr4	95557567	95557567	rs71581597	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	4q22.3		rs71581597-?	NR	4E-15		0.0188892	[0.014-0.024] unit increase	Affymetrix [20259828] (imputed)	N
1314	chr4	95561458	95561459	rs7690296	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Prostate cancer	7,438 White British ancestry cases, 118,206 White British ancestry controls	NA	4q22.3		rs7690296-?	NR	3E-7		1.0932	[1.06-1.13]	NR [680312]	N
1314	chr4	95562876	95562877	rs17021918	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	4q22.3	NR	rs17021918-C	0.65	1E-24		1.09	[1.07-1.11]	Illumina [20370935] (imputed)	N
1314	chr4	95562876	95562877	rs17021918	19767753	Eeles RA	2009-09-20	Nat Genet	Identification of seven new prostate cancer susceptibility loci through a genome-wide association study.	Prostate cancer	1,854 European ancestry cases, 1,894 European ancestry controls	19,879 cases and 18,761 controls of European, East Asian, African American, Latino, and Hawaiian ancestry	4q22.3	PDLIM5	rs17021918-?	0.65	4E-15		1.11	[1.08-1.15]	Illumina [541129]	N
1314	chr4	95573997	95573998	rs12511169	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	4q22.3	PDLIM5	rs12511169-T	0.6456	1E-11		0.1351	[0.096-0.174] mmHg increase	Affymetrix [NR] (imputed)	N
1314	chr4	95580634	95580635	rs547605479	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	4q22.3		rs547605479-G	NR	2E-8		0.0115	[0.0076-0.0154] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
1314	chr4	95588157	95588158	rs1509617	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	4q22.3		rs1509617-?	NR	3E-8				NR [9705931] (imputed)	N
1314	chr4	95594615	95594616	rs13133845	24529757	Xie T	2014-01-17	Neurobiol Aging	Genome-wide association study combining pathway analysis for typical sporadic amyotrophic lateral sclerosis in Chinese Han populations.	Amyotrophic lateral sclerosis (sporadic)	250 Han Chinese ancestry cases, 250 Han Chinese ancestry controls	NA	4q22.3	BMPR1B	rs13133845-?		6E-6				Illumina [859311]	N
1314	chr4	95601228	95601229	rs28537315	34838041	Naderi E	2021-11-27	J Transl Med	A two-stage genome-wide association study of radiation-induced acute toxicity in head and neck cancer.	radiation-induced toxicity (standardized total average toxicity_patient)	881 Dutch ancestry individuals	241 Dutch ancestry individuals	4q22.3		rs28537315-A	NR	9E-7		0.2865698	[0.17-0.4] decrease	Illumina [6334277] (imputed)	N
1314	chr4	95614277	95614278	rs17022027	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral fat	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	4q22.3	PDLIM5	rs17022027-C	0.94	9E-6	(men)			Affymetrix, Illumina [2500000] (imputed)	N
1314	chr4	95615768	95615769	rs4699587	23518928	Liu M	2013-03-21	Mol Endocrinol	TSPYL5 SNPs: association with plasma estradiol concentrations and aromatase expression.	Estradiol plasma levels (breast cancer)	700 European ancestry cases, 50 African ancestry cases, 17 Asian ancestry cases, 5 American Indian ancestry cases	NA	4q22.3	NR	rs4699587-?	0.048	5E-7		1.763	[1.416-2.194] unit increase	Illumina [563945]	N
1314	chr4	95643956	95643957	rs10027628	23166209	Smith JG	2012-11-19	Circ Cardiovasc Genet	Impact of ancestry and common genetic variants on QT interval in African Americans.	QT interval	13,105 African American individuals	NA	4q22.3	NR	rs10027628-C	0.26	6E-6		1.81	[1.05-2.57] unit decrease	Affymetrix, Illumina [2800000] (imputed)	N
1315	chr4	95720308	95720309	rs7673420	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Prepulse inhibition of the startle response	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	4q22.3	BMPR1B	rs7673420-T	NR	3E-7		7.277194	[4.55-10.01] unit decrease	Illumina [> 6200000] (imputed)	N
1315	chr4	95747399	95747400	rs11728570	34124712	Sherva R	2021-02-28	Explor Med	Genome-wide association study of phenotypes measuring progression from first cocaine or opioid use to dependence reveals novel risk genes.	Opioid dependence (time to event)	1,307 African American cases, 974 African American controls	144 African American cases, 354 African American controls	4q22.3	BMPR1B	rs11728570-T	0.37	1E-6		0.82	[NR]	Illumina [NR] (imputed)	N
1315	chr4	95757372	95757373	rs1050715238	33430342	Younes N	2021-01-07	J Pers Med	A Whole-Genome Sequencing Association Study of Low Bone Mineral Density Identifies New Susceptibility Loci in the Phase I Qatar Biobank Cohort.	Bone mineral density (trunk)	3,000 Qatari ancestry individuals	NA	4q22.3		rs1050715238-?	NR	5E-8				Illumina [1084750]	N
1315	chr4	95773584	95773585	rs1544387	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	4q22.3	BMPR1B	rs1544387-T	0.576508859430866	6E-9		0.0031715	[NR] unit increase	Affymetrix [> 30000000] (imputed)	N
1315	chr4	95781697	95781698	rs17022370	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Systolic blood pressure (baseline)	5,304 African American individuals	6,500 African American individuals	4q22.3	NR	rs17022370-A	0.1231	9E-7		1.8253	[1.1-2.55] mmHg decrease	Affymetrix, Illumina [NR] (imputed)	N
1315	chr4	95792515	95792516	rs17616243	30470734	Hackinger S	2018-11-23	Transl Psychiatry	Evidence for genetic contribution to the increased risk of type 2 diabetes in schizophrenia.	Schizophrenia	924 Greek ancestry cases, 1,125 Greek ancestry controls	NA	4q22.3	BMPR1B	rs17616243-T	0.16	3E-9		2.03	[1.79-2.27]	Illumina [14528340] (imputed)	N
1316	chr4	95833010	95833011	rs78848851	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Scarlet fever	6,812 European ancestry cases, 113,837 European ancestry controls	NA	4q22.3	NR	rs78848851-?	NR	4E-7		0.2352	[0.15-0.32] unit increase	Illumina [at least 560000] (imputed)	N
1316	chr4	95834033	95834034	rs1859156	20732626	Mick E	2010-05-14	J Am Acad Child Adolesc Psychiatry	Family-based genome-wide association scan of attention-deficit/hyperactivity disorder.	Attention deficit hyperactivity disorder	735 trios from 732 families	NA	4q22.3	BMPR1B	rs1859156-?	0.79	2E-6		1.54	[NR]	Illumina [835136]	N
1316	chr4	95856680	95856681	rs10021303	22384028	Guo Y	2012-02-24	PLoS One	A genome-wide linkage and association scan reveals novel loci for hypertension and blood pressure traits.	Hypertension	315 Hong Kong Chinese ancestry individuals from 111 families	NA	4q22.3	NR	rs10021303-A	0.31	7E-6				Illumina [503984]	N
1316	chr4	95877150	95877151	rs13138431	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	4q22.3	BMPR1B	rs13138431-A	0.738571	5E-9		0.0122615	[0.0081-0.0164] unit increase	NR [13737936] (imputed)	N
1316	chr4	95916918	95916919	rs716191	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	4q22.3		rs716191-T	NR	7E-10		0.0105	[0.0072-0.0138] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
1316	chr4	95916918	95916919	rs716191	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	4q22.3		rs716191-T	NR	3E-9		0.0103	[0.007-0.0136] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
1316	chr4	95916918	95916919	rs716191	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	4q22.3	NR	rs716191-T	0.380175	3E-10		0.012009	[0.0083-0.0157] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
1316	chr4	95937121	95937122	rs145393749	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-hip ratio	1,254 whole genome sequenced European ancestry individuals, 3,071 whole genome sequenced individuals, 29,723 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,053 Mylopotamos (founder/genetic isolate) individuals, 879 Pomak (founder/genetic isolate) individuals	206,053 European ancestry individuals	4q22.3	BMPR1B	rs145393749-A	0.0117	7E-6		0.2037	[0.11-0.29] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1316	chr4	95937283	95937284	rs7681920	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Stable angina pectoris	17,894 European ancestry cases, 325,132 European ancestry controls, 18,833 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	4q22.3		rs7681920-A	NR	1E-10		0.0566	[0.039-0.074] unit decrease	Affymetrix, Illumina [20456336] (imputed)	N
1316	chr4	95938385	95938386	rs1347345	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	4q22.3	BMPR1B	rs1347345-A	0.6163	1E-12		0.1792	[0.13-0.23] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1317	chr4	95948203	95948204	rs28663472	33888516	Zheng T	2021-04-22	Gut	Genome-wide analysis of 944 133 individuals provides insights into the etiology of haemorrhoidal disease.	Haemorrhoidal disease	218,920 European ancestry cases, 725,213 European ancestry controls	NA	4q22.3	BMPR1B	rs28663472-?	0.4507	5E-10		0.98	[0.97-0.98]	Affymetrix, Illumina [8494288] (imputed)	N
1317	chr4	96008593	96008594	rs9995627	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	4q22.3	BMPR1B	rs9995627-?	NR	6E-10		0.068156	[0.047-0.09] unit decrease	Illumina [4804024] (imputed)	N
1317	chr4	96018336	96018337	rs12645001	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	4q22.3	NA	rs12645001-A	0.3538	5E-10		0.0112	[0.0077-0.0147] unit decrease	NR [~ 27400000] (imputed)	N
1317	chr4	96025093	96025094	rs17023017	29051540	Marenholz I	2017-10-20	Nat Commun	Genome-wide association study identifies the SERPINB gene cluster as a susceptibility locus for food allergy.	Hen's egg allergy	288 European ancestry cases, 2,387 European ancestry controls	416 European ancestry cases, 2,510 European ancestry controls	4q22.3	BMPR1B	rs17023017-G	0.122	7E-7		1.54	(discovery)	Illumina [5405832] (imputed)	N
1317	chr4	96040703	96040704	rs3821964	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	4q22.3	BMPR1B	rs3821964-T	0.6057	6E-10		0.1676	[0.11-0.22] mmHg decrease	Affymetrix [NR] (imputed)	N
1317	chr4	96057866	96057867	rs150938423	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls, 33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	4q22.3		rs150938423-G	NR	4E-8		0.0265	[0.017-0.036] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1317	chr4	96066671	96066672	rs1434538	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	4q22.3	BMPR1B	rs1434538-T	0.532	6E-8		0.034	[0.022-0.046] unit decrease	Affymetrix [7947838] (imputed)	N
1317	chr4	96072244	96072245	rs3821968	32469969	Pott J	2020-05-29	PLoS One	Genome-wide analysis of carotid plaque burden suggests a role of IL5 in men.	Sum of stenosis	727 European ancestry men, 550 European ancestry women	NA	4q22.3	BMPR1B, UNC5C	rs3821968-T	0.118176	2E-7		0.298524	[0.19-0.41] % increase	Affymetrix [532676] (imputed)	N
1317	chr4	96072244	96072245	rs3821968	32469969	Pott J	2020-05-29	PLoS One	Genome-wide analysis of carotid plaque burden suggests a role of IL5 in men.	Sum of carotid plaque area	727 European ancestry men, 550 European ancestry women	NA	4q22.3	BMPR1B, UNC5C	rs3821968-T	0.118176	1E-6		0.258773	[0.15-0.36] mm2 increase	Affymetrix [532676] (imputed)	N
1317	chr4	96072244	96072245	rs3821968	32469969	Pott J	2020-05-29	PLoS One	Genome-wide analysis of carotid plaque burden suggests a role of IL5 in men.	Maximum stenosis	727 European ancestry men, 550 European ancestry women	NA	4q22.3	BMPR1B, UNC5C	rs3821968-T	0.118176	1E-6		0.200136	[0.12-0.28] % increase	Affymetrix [532676] (imputed)	N
1318	chr4	96075964	96075965	rs1434536	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	4q22.3		rs1434536-T	0.5514	3E-12		0.15914968	[0.12-0.2] mmHg decrease	Affymetrix, Illumina [242865] (imputed)	N
1318	chr4	96075964	96075965	rs1434536	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	4q22.3		rs1434536-T	0.5514	3E-10		0.09213119	[0.061-0.123] mmHg decrease	Affymetrix, Illumina [242866] (imputed)	N
1318	chr4	96087100	96087101	rs7694531	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	4q22.3	NR	rs7694531-?	NR	8E-9				Affymetrix [~ 8270000] (imputed)	N
1318	chr4	96087100	96087101	rs7694531	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	4q22.3		rs7694531-?	NR	1E-7				NR [~ 8900000] (imputed)	N
1318	chr4	96087100	96087101	rs7694531	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	4q22.3		rs7694531-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1318	chr4	96091523	96091524	rs2241743	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	4q22.3	NA	rs2241743-A	0.5699	9E-11		0.0106	[0.0075-0.0137] unit decrease	NR [~ 27400000] (imputed)	N
1318	chr4	96104670	96104671	rs17023134	32574161	Dapas M	2020-06-23	PLoS Med	Distinct subtypes of polycystic ovary syndrome with novel genetic associations: An unsupervised, phenotypic clustering analysis.	Polycystic ovary syndrome (reproductive subtype)	123 European ancestry cases, 2,964 European ancestry controls	84 European ancestry cases, 1,134 European ancestry controls	4q22.3	BMPR1B, UNC5C	rs17023134-G	0.05	1E-8		3.02	2.06-4.42	Illumina [NR] (imputed)	N
1318	chr4	96113366	96113367	rs111161432	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Angina pectoris	30,025 European ancestry cases, 440,906 European ancestry controls, 14,007 East Asian ancestry cases, 145,158 East Asian ancestry controls	NA	4q22.3		rs111161432-A	NR	1E-9		0.0757	[0.051-0.1] unit decrease	Affymetrix, Illumina [25842036] (imputed)	N
1318	chr4	96114384	96114385	rs3755879	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	4q22.3	NR	rs3755879-G	0.6847	6E-11		0.0326	[0.023-0.042] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
1318	chr4	96114384	96114385	rs3755879	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	4q22.3	NR	rs3755879-G	0.6555	6E-11		0.0273	[0.019-0.036] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1318	chr4	96117370	96117371	rs3775058	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	4q22.3	UNC5C	rs3775058-A	0.249444	5E-6		1.04	[1.02-1.06]	NR [8126035] (imputed)	N
1318	chr4	96117370	96117371	rs3775058	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	4q22.3	UNC5C	rs3775058-A	0.2341	8E-9		0.0386	[0.025-0.052] unit increase	Affymetrix [at least 7947838] (imputed)	N
1318	chr4	96126205	96126206	rs3775051	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	4q22.3	NR	rs3775051-C	0.3613	6E-9				NR [9056863] (imputed)	N
1318	chr4	96145119	96145120	rs2865384	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	4q22.3	NR	rs2865384-?	NR	5E-8				Affymetrix [~ 8270000] (imputed)	N
1318	chr4	96145414	96145415	rs62319060	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	4q22.3		rs62319060-C	NR	2E-8		0.0371	[0.024-0.05] unit increase	Affymetrix, Illumina [25845091] (imputed)	N
1318	chr4	96150043	96150044	rs4419475	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		4q22.3	UNC5C	rs4419475-A	0.59261	7E-9		0.00809618	[0.0054-0.0108] unit decrease	Affymetrix [12370749]	N
1318	chr4	96159816	96159817	rs12643654	20932310	Han MR	2010-10-08	BMC Neurol	Genome-wide association reveals genetic effects on human A?42 and ? protein levels in cerebrospinal fluids: a case control study.	Cerebrospinal P-tau181p levels	172 European ancestry Alzheimer's disease cases, 109 European ancestry mild cognitive impairment cases, 109 European ancestry controls	NA	4q22.3	UNC5C	rs12643654-G	NR	5E-7	(AD)			Illumina [498205]	N
1319	chr4	96298941	96298942	rs6822806	29317602	Hall LS	2018-01-10	Transl Psychiatry	Genome-wide meta-analyses of stratified depression in Generation Scotland and UK Biobank.	Major depressive disorder	6,997 European ancestry female cases, 16,172 European ancestry female controls, 3,852 European ancestry male cases, 16,034 European ancestry male controls	NA	4q22.3	UNC5C	rs6822806-T	NR	5E-6	(males)	0.18	[0.1-0.26] unit decrease	Affymetrix, Illumina [7105178] (imputed)	N
1319	chr4	96304559	96304560	rs6419133	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	4q22.3	UNC5C	rs6419133-C	NR	9E-7	(women)	0.02278	[0.014-0.032] unit decrease	Illumina [13520550] (imputed)	N
1320	chr4	96363011	96363012	rs3846455	28441426	White CC	2017-04-25	PLoS Med	Identification of genes associated with dissociation of cognitive performance and neuropathological burden: Multistep analysis of genetic, epigenetic, and transcriptional data.	Residual cognition	979 European ancestry individuals	NA	4q22.3	UNC5C	rs3846455-G	0.07	3E-6		0.42	[NR] z score decrease	Affymetrix, Illumina [~ 7000000] (imputed)	N
1320	chr4	96366441	96366442	rs3857231	29460428	Gelernter J	2018-02-20	Alcohol Clin Exp Res	Genomewide association study of alcohol dependence and related traits in a Thai population.	Alcohol dependence symptom count	1,045 Thai ancestry individuals	NA	4q22.3	UNC5C	rs3857231-C	0.1003	4E-6		0.6447	[0.37-0.92] unit increase	Illumina [at least 4683137] (imputed)	N
1320	chr4	96373609	96373610	rs73838836	31049640	Chen J	2019-05-02	Diabetologia	Genome-wide association study of type 2 diabetes in Africa.	Type 2 diabetes	2,633 African ancestry cases, 1,714 African ancestry controls	NA	4q22.3	UNC5C	rs73838836-A	0.023	5E-6		1.48	[1.13-1.94]	Affymetrix, Illumina [12148595] (imputed)	N
1320	chr4	96393116	96393117	rs10013079	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Tenofovir clearance in HIV infection	243 European ancestry cases, 149 African American cases, 100 Hispanic American cases, 9 unknown ancestry cases	NA	4q22.3	NR	rs10013079-?		5E-6	(EA)			Illumina [~ 5190000] (imputed)	N
1320	chr4	96393116	96393117	rs10013079	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Tenofovir clearance in HIV infection	243 European ancestry cases, 149 African American cases, 100 Hispanic American cases, 9 unknown ancestry cases	NA	4q22.3	NR	rs10013079-?		4E-6	(EA)			Illumina [~ 5190000] (imputed)	N
1320	chr4	96424679	96424680	rs17384439	26859814	den Braber A	2016-02-09	Transl Psychiatry	Obsessive-compulsive symptoms in a large population-based twin-family sample are predicted by clinically based polygenic scores and by genome-wide SNPs.	Obsessive-compulsive symptoms	6,931 individuals	NA	4q22.3	UNC5C	rs17384439-T	NR	2E-6		0.8323	unit increase	Affymetrix, Illumina, Perlegen [31265038] (imputed)	N
1320	chr4	96432153	96432154	rs35063103	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein UNC5C	5,365 Icelandic ancestry individuals	NA	4q22.3		rs35063103-C	0.4071	5E-18		0.154726	[0.12-0.19] unit increase	Illumina [7506463] (imputed)	N
1320	chr4	96444052	96444053	rs57091121	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	4q22.3	UNC5C	rs57091121-T	0.337	2E-25	(Netrin receptor UNC5C, UNC5C.5139.32.3)	0.27	[0.21-0.33] unit increase	Affymetrix [10572788] (imputed)	N
1320	chr4	96457803	96457804	rs10030217	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q22.3	UNC5C	rs10030217-A	0.58078125	2E-11	(UNC5C, 5139_32_3)	0.15980871	[0.11-0.21] unit decrease	Illumina [> 1000000] (imputed)	N
1320	chr4	96458432	96458433	rs10032931	20395239	Macgregor S	2010-04-15	Hum Mol Genet	Genome-wide association identifies ATOH7 as a major gene determining human optic disc size.	Optic nerve measurement (cup-to-disc ratio)	1,368 European ancestry twins from 666 families	848 European ancestry twins from 531 families	4q22.3	UNC5C	rs10032931-C	NR	4E-6		0.195	[0.10-0.29] unit decrease	Illumina [~ 2740000] (imputed)	N
1320	chr4	96467502	96467503	rs11097470	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	4q22.3	UNC5C	rs11097470-A	0.072	5E-6	(Energy balance )	0.04	[NR] kcal/d increase	Illumina [899892]	N
1320	chr4	96468503	96468504	rs35737522	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	4q22.3	NR	rs35737522-?	NR	5E-6		0.0478	[0.027-0.068] unit decrease	Illumina [at least 560000] (imputed)	N
1321	chr4	96508781	96508782	rs6419137	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Lean body mass	3,399 whole genome sequenced individuals, 11,801 European ancestry individuals	10,676 European ancestry individuals	4q22.3	RP11-710C12.1	rs6419137-T	0.1229	2E-6		0.0844	[0.05-0.119] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1321	chr4	96527531	96527532	rs264299	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	4q22.3	NR	rs264299-C	0.286	3E-18	(Netrin receptor UNC5C, UNC5C.5139.32.3)	0.24	[0.18-0.3] unit decrease	Affymetrix [10572788] (imputed)	N
1322	chr4	96605352	96605353	rs60547137	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	4q22.3	Intergenic	rs60547137-T	0.9113	3E-9	(MTAG)	0.0137	[0.0092-0.0182] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1322	chr4	96611492	96611493	rs60507300	33575800	Mulford AJ	2021-02-11	Hum Mol Genet	Genetically regulated expression underlies cellular sensitivity to chemotherapy in diverse populations.	Daunorubicin drug response (IC50)	173 African ancestry individuals	NA	4q22.3	NR	rs60507300-G	NR	2E-9		0.79	unit increase	NR [9536189] (imputed)	N
1323	chr4	96800225	96800226	rs115111323	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	4q22.3		rs115111323-A	0.12	1E-8		5.73	z score increase	Affymetrix [9061022] (imputed)	N
1323	chr4	96800225	96800226	rs115111323	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 40)	19,670 European ancestry individuals	NA	4q22.3		rs115111323-?	NR	1E-10				NR [9705931] (imputed)	N
1323	chr4	96806296	96806297	rs62307736	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota relative abundance (bacterial taxa)	up to 858 Metropolitan French ancestry individuals	NA	4q22.3	NR	rs62307736-?	NR	2E-9	(Coprococcus_comes)	0.277483	[0.19-0.37] unit decrease	Illumina [5293637] (imputed)	N
1323	chr4	96807974	96807975	rs11727234	29855589	Chernus J	2018-05-31	Sci Rep	GWAS reveals loci associated with velopharyngeal dysfunction.	Velopharyngeal dysfunction	54 Hispanic or Latin American and unknown ancestry cases, 922 Hispanic or Latin American and unknown ancestry controls	NA	4q22.3	NR	rs11727234-?	NR	7E-7		0.10489492	[NR] unit decrease	Illumina [at least 269494] (imputed)	N
1324	chr4	96906563	96906564	rs263071	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 20)	19,670 European ancestry individuals	NA	4q22.3		rs263071-?	NR	3E-13				NR [9705931] (imputed)	N
1324	chr4	96906563	96906564	rs263071	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	4q22.3	NR	rs263071-?		3E-9	(Inferior fronto-occipital fasciculus)			NR [8955960] (imputed)	N
1324	chr4	96943037	96943038	rs13120432	26305897	Iyengar SK	2015-08-25	PLoS Genet	Genome-Wide Association and Trans-ethnic Meta-Analysis for Advanced Diabetic Kidney Disease: Family Investigation of Nephropathy and Diabetes (FIND).	Diabetic kidney disease	up to 1,564 African American cases, 369  African American diabetic controls, 1,288 African American non-diabetic controls, 538 American Indian ancestry cases, 319 American Indian ancestry diabetic controls, 342 European ancestry cases, 404 European ancestry diabetic controls, 779 Mexican ancestry cases, 594 Mexican ancestry diabetic controls	NA	4q22.3	NR	rs13120432-?	NR	4E-6	(dominant)	1.5384616	[1.25-1.92]	Affymetrix [NR]	N
1324	chr4	96949300	96949301	rs13107177	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	4q22.3	NA	rs13107177-T		1E-8		0.0111663	[0.0073-0.015] unit increase	Illumina [13288253] (imputed)	N
1325	chr4	97003663	97003664	rs62315917	29346644	Yan Q	2018-01-15	Hum Mol Genet	Genome-wide Analysis of Disease Progression in Age-related Macular Degeneration.	Disease progression in age-related macular degeneration (adjusted for baseline)	1,105 progressed eyes and 3,912 non-progressed eyes from 2,721 European ancestry individuals	NA	4q22.3	PDHA2, STPG2-AS1	rs62315917-T	0.05	6E-6		1.52		Illumina [8974355] (imputed)	N
1325	chr4	97033700	97033701	rs186689484	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Triacylglyceride levels	2,045 European ancestry individuals	NA	4q22.3	PDHA2	rs186689484-A	NR	4E-8	(TAG(52:4;0))	0.3979	[0.26-0.54] unit decrease	Illumina [~ 9300000] (imputed)	N
1325	chr4	97097438	97097439	rs7661756	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure	35,269 European ancestry cases, 63,451 European ancestry controls	NA	4q22.3	NR	rs7661756-C	0.755582	2E-6		1.0695187	[1.04-1.1]	Affymetrix [7791636] (imputed)	N
1326	chr4	97132426	97132427	rs80121925	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q22.3	NR	rs80121925-G	0.03484	9E-9	(SNRPD3)	0.02921	NR unit increase	Illumina [1671387] (imputed)	N
1326	chr4	97132426	97132427	rs80121925	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q22.3	NR	rs80121925-G	0.03484	5E-9	(RAB7A)	0.03467	NR unit increase	Illumina [1671387] (imputed)	N
1326	chr4	97180085	97180086	rs11943536	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income	286,301 British ancestry individuals	NA	4q22.3	RP11-61G24.1	rs11943536-T	NR	4E-8		0.011121	[0.0072-0.0151] unit increase	Affymetrix [18485882] (imputed)	N
1328	chr4	97516827	97516828	rs148930818	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q22.3	NR	rs148930818-A	0.0122	8E-9	(NCL)	0.361	NR unit increase	Illumina [1671387] (imputed)	N
1328	chr4	97516827	97516828	rs148930818	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q22.3	NR	rs148930818-A	0.0122	8E-10	(RAB7A)	0.0632	NR unit increase	Illumina [1671387] (imputed)	N
1328	chr4	97516827	97516828	rs148930818	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q22.3	NR	rs148930818-A	0.0122	5E-9	(SNRPD3)	0.05139	NR unit increase	Illumina [1671387] (imputed)	N
1328	chr4	97516827	97516828	rs148930818	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q22.3	NR	rs148930818-A	0.0122	4E-9	(ABCB6)	0.04595	NR unit increase	Illumina [1671387] (imputed)	N
1328	chr4	97516827	97516828	rs148930818	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q22.3	NR	rs148930818-A	0.0122	2E-8	(EIF4A1)	0.6461	NR unit increase	Illumina [1671387] (imputed)	N
1329	chr4	97543098	97543099	rs10014469	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	4q22.3	NR	rs10014469-?		4E-8	(Inferior fronto-occipital fasciculus)			NR [8955960] (imputed)	N
1329	chr4	97549766	97549767	rs6830106	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	4q22.3		rs6830106-C	0.46	2E-13		7.33	z score increase	Affymetrix [9061022] (imputed)	N
1329	chr4	97549766	97549767	rs6830106	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	4q22.3	NR	rs6830106-C	0.4302	3E-8				NR [9056863] (imputed)	N
1329	chr4	97552997	97552998	rs56413328	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	4q22.3	NR	rs56413328-?	NR	4E-6		10667.331	NR unit decrease	Illumina [2379855]	N
1329	chr4	97569559	97569560	rs77465470	30787463	Escala-Garcia M	2019-02-21	Br J Cancer	Genome-wide association study of germline variants and breast cancer-specific mortality.	Breast cancer specific mortality in breast cancer	7,697 European ancestry cases, 88,964 European ancestry controls	NA	4q22.3	NR	rs77465470-?	NR	6E-6		3.9550767	[2.18-7.16]	Affymetrix, Illumina [~ 10400000] (imputed)	N
1329	chr4	97574732	97574732	rs113130511	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	4q22.3	NR	rs113130511-?		3E-12	(Inferior fronto-occipital fasciculus)			NR [8955960] (imputed)	N
1329	chr4	97578892	97578893	rs4699294	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	4q22.3		rs4699294-C	0.49	4E-8		5.5	z score increase	Affymetrix [9061022] (imputed)	N
1329	chr4	97579042	97579043	rs4699295	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	4q22.3		rs4699295-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1330	chr4	97651864	97651865	rs2222912	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	4q22.3	PDHA2	rs2222912-?	NR	5E-6	(TAG 58:7)	2.2625494	[1.29-3.23] unit increase	Affymetrix [at least 2500000] (imputed)	N
1330	chr4	97669325	97669326	rs77888609	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in diabetes mellitus	153 Korean ancestry cases, 5,161 Korean ancestry controls	NA	4q22.3		rs77888609-A	0.01251	1E-6		4.313	[2.388-7.79]	Affymetrix [7975321] (imputed)	N
1330	chr4	97695400	97695401	rs12509878	29973135	Rimpela JM	2018-07-04	BMC Med Genet	Genome-wide association study of nocturnal blood pressure dipping in hypertensive patients.	Diastolic blood pressure night-to-day ratio in hypertension	204 Finnish ancestry individuals	NA	4q22.3	lncRNA	rs12509878-C	0.34	6E-6		2.2	percent decrease	Illumina [631844]	N
1330	chr4	97727068	97727069	rs4626214	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	4q22.3	COX7A2P2	rs4626214-G	NR	4E-6	(EA)	1.0530751	[1.03-1.08]	Illumina [6627481] (imputed)	N
1330	chr4	97727068	97727069	rs4626214	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	4q22.3	COX7A2P2	rs4626214-G	NR	2E-7		1.0526316	[1.03-1.07]	Illumina [6627481] (imputed)	N
1330	chr4	97727068	97727069	rs4626214	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	4q22.3	intergenic	rs4626214-G	NR	5E-7		1.0504202	[1.03-1.07]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1330	chr4	97727068	97727069	rs4626214	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	4q22.3	NR	rs4626214-G	NR	7E-7		1.0526316	[NR]	Illumina [7158791] (imputed)	N
1330	chr4	97741142	97741143	rs1997529	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	4q22.3	NR	rs1997529-?	NR	4E-8		1.0523214	[1.03-1.07]	Affymetrix, Illumina [12447948] (imputed)	N
1331	chr4	97853879	97853880	rs143118954	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Alcohol consumption (drinks per week)	up to 357,854 European ancestry individuals	NA	4q22.3	C4orf37	rs143118954-A	0.00233	2E-9		0.157	[0.11-0.21] unit decrease	Illumina [~ 250000] (imputed)	N
1331	chr4	97880408	97880409	rs7694207	24009623	Jiang J	2013-08-30	Front Genet	Genome-wide association study for biomarker identification of Rapamycin and Everolimus using a lymphoblastoid cell line system.	Response to mTOR inhibitor (everolimus)	87 European ancestry individuals, 91 African American individuals, 94 Han Chinese ancestry individuals	NA	4q22.3	MGC46496	rs7694207-?	NR	4E-6		0.28	[NR] unit increase	Affymetrix, Illumina [1348798]	N
1331	chr4	97882319	97882320	rs10015037	21775986	Hinch AG	2011-07-20	Nature	The landscape of recombination in African Americans.	Recombination measurement	30,033 African American individuals	NA	4q22.3	intergenic	rs10015037-?	0.83	2E-7	(Hotspot Usage)			Affymetrix, Illumina [3058149] (imputed)	N
1331	chr4	97908903	97908904	rs2525795	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mode of anisotropy)	17,706 European ancestry individuals	NA	4q22.3	NR	rs2525795-?		2E-8	(External capsule )			NR [8955960] (imputed)	N
1332	chr4	97916535	97916536	rs114795211	32141789	Theriault S	2019-10-15	Circ Genom Precis Med	Genetic Association Analyses Highlight IL6, ALPL, and NAV1 As 3 New Susceptibility Genes Underlying Calcific Aortic Valve Stenosis.	Calcific aortic valve stenosis	5,115 European ancestry cases, 354,072 European ancestry controls	NA	4q22.3	PDHA2-STPG2	rs114795211-A	0.027	4E-6		1.48	[1.31-1.65]	Affymetrix, Illumina [8000000] (imputed)	N
1332	chr4	97917771	97917772	rs7673377	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 20)	19,670 European ancestry individuals	NA	4q22.3		rs7673377-?	NR	8E-13				NR [9705931] (imputed)	N
1332	chr4	97918158	97918159	rs13121156	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	4q22.3		rs13121156-C	0.28	9E-9		5.74	z score increase	Affymetrix [9061022] (imputed)	N
1332	chr4	97918158	97918159	rs13121156	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	4q22.3	NR	rs13121156-C	0.3144	9E-10				NR [9056863] (imputed)	N
1332	chr4	97921252	97921253	rs17246599	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	4q22.3	NR	rs17246599-?		2E-8	(Inferior fronto-occipital fasciculus)			NR [8955960] (imputed)	N
1332	chr4	97921252	97921253	rs17246599	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	4q22.3	NR	rs17246599-?		5E-12	(Inferior fronto-occipital fasciculus)			NR [8955960] (imputed)	N
1332	chr4	97922548	97922549	rs7659379	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	4q22.3	NR	rs7659379-?		5E-16	(Inferior fronto-occipital fasciculus)			NR [8955960] (imputed)	N
1332	chr4	97936877	97936878	rs6840385	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	4q22.3		rs6840385-T	0.27	3E-20		9.23	z score increase	Affymetrix [9061022] (imputed)	N
1332	chr4	97940557	97940557	rs35318942	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mode of anisotropy)	17,706 European ancestry individuals	NA	4q22.3	NR	rs35318942-?		8E-9	(External capsule )			NR [8955960] (imputed)	N
1332	chr4	97940557	97940557	rs35318942	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	4q22.3	NR	rs35318942-?		2E-9	(External capsule )			NR [8955960] (imputed)	N
1332	chr4	97943058	97943059	rs70953042	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	4q22.3	NR	rs70953042-?		3E-10	(Inferior fronto-occipital fasciculus)			NR [8955960] (imputed)	N
1332	chr4	97943837	97943838	rs117264960	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in diabetes mellitus	153 Korean ancestry cases, 5,161 Korean ancestry controls	NA	4q22.3		rs117264960-T	0.01797	1E-6		3.475	[2.092-5.771]	Affymetrix [7975321] (imputed)	N
1332	chr4	97945324	97945325	rs17247509	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	4q22.3		rs17247509-G	0.27	4E-11		6.62	z score increase	Affymetrix [9061022] (imputed)	N
1332	chr4	97945324	97945325	rs17247509	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	4q22.3	NR	rs17247509-G	0.3113	1E-11				NR [9056863] (imputed)	N
1332	chr4	97950727	97950728	rs17247838	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	4q22.3	NR	rs17247838-?		1E-11	(Inferior fronto-occipital fasciculus)			NR [8955960] (imputed)	N
1332	chr4	97950727	97950728	rs17247838	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	4q22.3	NR	rs17247838-?		8E-9	(Inferior fronto-occipital fasciculus)			NR [8955960] (imputed)	N
1332	chr4	97959456	97959457	rs13116809	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	4q22.3	NR	rs13116809-?		9E-11	(Inferior fronto-occipital fasciculus)			NR [8955960] (imputed)	N
1332	chr4	97959456	97959457	rs13116809	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	4q22.3	NR	rs13116809-C	0.198	3E-9		0.00817104	[0.0055-0.0109] unit decrease	NR [9732723] (imputed)	N
1332	chr4	97959606	97959607	rs76755915	31260374	Pedergnana V	2019-07-01	J Interferon Cytokine Res	Impact of IFNL4 Genetic Variants on Sustained Virologic Response and Viremia in Hepatitis C Virus Genotype 3 Patients.	Response to interferon treatment in hepatitis C virus genotype 3	717 European, Asian and unknown ancestry responders, 541 European, Asian and unknown ancestry non-responders	NA	4q22.3	NR	rs76755915-?	NR	5E-7		4.5454545	NR	Affymetrix [~ 18000000] (imputed)	N
1332	chr4	97975447	97975448	rs6841600	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	4q22.3		rs6841600-T	0.821	1E-9		0.009	[0.007-0.011] unit increase	NR [NR] (imputed)	N
1333	chr4	98085288	98085289	rs72674100	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.3	Intergenic	rs72674100-A	0.943	2E-6	(AA)	0.035	unit increase	Illumina [NR] (imputed)	N
1333	chr4	98092306	98092307	rs4459994	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	4q22.3	NR	rs4459994-A	NR	2E-8		5.639	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1334	chr4	98182578	98182579	rs11933823	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	4q22.3	STPG2	rs11933823-C	0.3188	1E-8		0.01189557	[0.0078-0.016] unit decrease	Illumina [9339358] (imputed)	N
1334	chr4	98288691	98288692	rs139978857	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	4q22.3	NR	rs139978857-?	NR	7E-9				Illumina [7760689] (imputed)	N
1335	chr4	98373817	98373818	rs143475242	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Alcohol consumption (drinks per week)	up to 357,854 European ancestry individuals	NA	4q22.3	C4orf37	rs143475242-T	0.00341	2E-12		0.153	[0.11-0.2] unit decrease	Illumina [~ 250000] (imputed)	N
1336	chr4	98459929	98459930	rs11934983	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.3	Intergenic	rs11934983-C	0.692	3E-6	(AA)	0.016	unit increase	Illumina [NR] (imputed)	N
1336	chr4	98466558	98466559	rs960450	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.3	Intergenic	rs960450-T	0.318	2E-6	(AA)	0.016	unit decrease	Illumina [NR] (imputed)	N
1336	chr4	98489367	98489368	rs12642926	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.3	C4orf37	rs12642926-A	0.69	1E-6	(AA)	0.017	unit increase	Illumina [NR] (imputed)	N
1336	chr4	98505348	98505349	rs28766878	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter non-alcoholic beverage consumption	85,852 European ancestry individuals	39,924 European ancestry individuals	4q22.3	STPG2	rs28766878-T	0.4925	4E-6		0.0075	[0.0044-0.0106] unit increase	Affymetrix [~ 7740000] (imputed)	N
1336	chr4	98505348	98505349	rs28766878	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.3	C4orf37	rs28766878-C	0.688	3E-6	(AA)	0.017	unit increase	Illumina [NR] (imputed)	N
1336	chr4	98505437	98505438	rs72889099	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.3	C4orf37	rs72889099-G	0.559	5E-6	(AA)	0.015	unit decrease	Illumina [NR] (imputed)	N
1336	chr4	98506462	98506463	rs1911792	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.3	C4orf37	rs1911792-G	0.678	5E-6	(AA)	0.016	unit increase	Illumina [NR] (imputed)	N
1336	chr4	98507211	98507212	rs72889102	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.3	C4orf37	rs72889102-G	0.559	5E-6	(AA)	0.015	unit decrease	Illumina [NR] (imputed)	N
1336	chr4	98508400	98508401	rs1532993	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.3	C4orf37	rs1532993-C	0.668	3E-6	(AA)	0.016	unit increase	Illumina [NR] (imputed)	N
1336	chr4	98508979	98508980	rs1508459	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.3	C4orf37	rs1508459-G	0.559	5E-6	(AA)	0.015	unit decrease	Illumina [NR] (imputed)	N
1336	chr4	98509129	98509130	rs1567287	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.3	C4orf37	rs1567287-T	0.67	3E-6	(AA)	0.016	unit increase	Illumina [NR] (imputed)	N
1336	chr4	98509510	98509511	rs17026828	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.3	C4orf37	rs17026828-A	0.562	4E-6	(AA)	0.016	unit decrease	Illumina [NR] (imputed)	N
1336	chr4	98509975	98509976	rs61456001	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.3	C4orf37	rs61456001-G	0.559	5E-6	(AA)	0.015	unit decrease	Illumina [NR] (imputed)	N
1336	chr4	98510827	98510828	rs56880249	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.3	C4orf37	rs56880249-C	0.56	5E-6	(AA)	0.015	unit decrease	Illumina [NR] (imputed)	N
1336	chr4	98511619	98511620	rs61154600	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.3	C4orf37	rs61154600-T	0.56	5E-6	(AA)	0.015	unit decrease	Illumina [NR] (imputed)	N
1336	chr4	98511625	98511626	rs58276078	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.3	C4orf37	rs58276078-C	0.56	5E-6	(AA)	0.015	unit decrease	Illumina [NR] (imputed)	N
1336	chr4	98521416	98521417	rs7662978	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.3	C4orf37	rs7662978-C	0.558	5E-6	(AA)	0.015	unit decrease	Illumina [NR] (imputed)	N
1336	chr4	98537102	98537103	rs72890850	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.3	C4orf37	rs72890850-G	0.57	1E-6	(AA)	0.017	unit decrease	Illumina [NR] (imputed)	N
1336	chr4	98542629	98542630	rs72890852	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.3	C4orf37	rs72890852-T	0.565	2E-6	(AA)	0.016	unit decrease	Illumina [NR] (imputed)	N
1336	chr4	98542758	98542759	rs76142193	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.3	C4orf37	rs76142193-A	0.564	3E-6	(AA)	0.016	unit decrease	Illumina [NR] (imputed)	N
1336	chr4	98545625	98545626	rs78681061	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.3	C4orf37	rs78681061-A	0.624	5E-6	(AA)	0.016	unit decrease	Illumina [NR] (imputed)	N
1336	chr4	98546672	98546673	rs7676966	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.3	C4orf37	rs7676966-C	0.562	5E-6	(AA)	0.015	unit decrease	Illumina [NR] (imputed)	N
1336	chr4	98549991	98549992	rs55901496	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.3	C4orf37	rs55901496-G	0.563	3E-6	(AA)	0.015	unit decrease	Illumina [NR] (imputed)	N
1336	chr4	98550197	98550198	rs17026847	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.3	C4orf37	rs17026847-T	0.562	5E-6	(AA)	0.015	unit decrease	Illumina [NR] (imputed)	N
1336	chr4	98550872	98550873	rs17026850	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.3	C4orf37	rs17026850-C	0.568	2E-6	(AA)	0.016	unit decrease	Illumina [NR] (imputed)	N
1336	chr4	98551992	98551993	rs2136082	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.3	C4orf37	rs2136082-T	0.625	4E-6	(AA)	0.016	unit decrease	Illumina [NR] (imputed)	N
1336	chr4	98552758	98552759	rs2078362	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.3	C4orf37	rs2078362-C	0.563	3E-6	(AA)	0.015	unit decrease	Illumina [NR] (imputed)	N
1336	chr4	98553815	98553816	rs60217712	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.3	C4orf37	rs60217712-T	0.563	3E-6	(AA)	0.015	unit decrease	Illumina [NR] (imputed)	N
1336	chr4	98556781	98556782	rs148460633	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.3	C4orf37	rs148460633-G	0.63	1E-6	(AA)	0.017	unit decrease	Illumina [NR] (imputed)	N
1336	chr4	98560569	98560570	rs147576484	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.3	C4orf37	rs147576484-T	0.625	4E-6	(AA)	0.016	unit decrease	Illumina [NR] (imputed)	N
1336	chr4	98561790	98561791	rs59901031	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.3	C4orf37	rs59901031-G	0.566	4E-6	(AA)	0.015	unit decrease	Illumina [NR] (imputed)	N
1336	chr4	98562156	98562157	rs1012333	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.3	C4orf37	rs1012333-C	0.624	3E-6	(AA)	0.016	unit decrease	Illumina [NR] (imputed)	N
1336	chr4	98563706	98563707	rs59602504	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.3	C4orf37	rs59602504-G	0.562	4E-6	(AA)	0.015	unit decrease	Illumina [NR] (imputed)	N
1336	chr4	98563845	98563846	rs59810062	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.3	C4orf37	rs59810062-A	0.563	3E-6	(AA)	0.015	unit decrease	Illumina [NR] (imputed)	N
1336	chr4	98565578	98565579	rs72890876	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.3	C4orf37	rs72890876-C	0.624	3E-6	(AA)	0.016	unit decrease	Illumina [NR] (imputed)	N
1337	chr4	98567638	98567639	rs56945629	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.3	C4orf37	rs56945629-T	0.562	4E-6	(AA)	0.015	unit decrease	Illumina [NR] (imputed)	N
1337	chr4	98567961	98567962	rs59606962	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.3	C4orf37	rs59606962-T	0.562	4E-6	(AA)	0.015	unit decrease	Illumina [NR] (imputed)	N
1337	chr4	98571528	98571529	rs72890889	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.3	C4orf37	rs72890889-A	0.562	4E-6	(AA)	0.015	unit decrease	Illumina [NR] (imputed)	N
1337	chr4	98580735	98580736	rs72892812	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.3	C4orf37	rs72892812-C	0.618	4E-6	(AA)	0.015	unit decrease	Illumina [NR] (imputed)	N
1337	chr4	98581629	98581630	rs59172540	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.3	C4orf37	rs59172540-G	0.614	5E-6	(AA)	0.015	unit decrease	Illumina [NR] (imputed)	N
1337	chr4	98581993	98581994	rs58864230	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.3	C4orf37	rs58864230-T	0.614	5E-6	(AA)	0.015	unit decrease	Illumina [NR] (imputed)	N
1337	chr4	98586549	98586550	rs60804385	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.3	C4orf37	rs60804385-C	0.614	5E-6	(AA)	0.015	unit decrease	Illumina [NR] (imputed)	N
1337	chr4	98586975	98586976	rs57750317	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.3	C4orf37	rs57750317-G	0.614	5E-6	(AA)	0.015	unit decrease	Illumina [NR] (imputed)	N
1337	chr4	98591388	98591389	rs17026855	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.3	C4orf37	rs17026855-A	0.618	2E-6	(AA)	0.016	unit decrease	Illumina [NR] (imputed)	N
1337	chr4	98597542	98597543	rs58111058	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.3	C4orf37	rs58111058-G	0.622	4E-6	(AA)	0.015	unit decrease	Illumina [NR] (imputed)	N
1337	chr4	98625239	98625240	rs61012000	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.3	C4orf37	rs61012000-T	0.622	4E-6	(AA)	0.015	unit decrease	Illumina [NR] (imputed)	N
1337	chr4	98628759	98628760	rs58724568	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.3	C4orf37	rs58724568-A	0.618	4E-6	(AA)	0.015	unit decrease	Illumina [NR] (imputed)	N
1337	chr4	98629498	98629499	rs72877580	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.3	C4orf37	rs72877580-G	0.653	8E-7	(AA)	0.017	unit decrease	Illumina [NR] (imputed)	N
1337	chr4	98635371	98635372	rs7658560	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.3	C4orf37	rs7658560-T	0.626	5E-6	(AA)	0.015	unit decrease	Illumina [NR] (imputed)	N
1337	chr4	98635584	98635585	rs7658798	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q22.3	C4orf37	rs7658798-G	0.626	5E-6	(AA)	0.015	unit decrease	Illumina [NR] (imputed)	N
1337	chr4	98689151	98689152	rs9654143	33783297	Zai CC	2021-03-30	World J Biol Psychiatry	Genome-wide association study of suicidal behaviour severity in mood disorders.	Suicide attempt severity in mood disorders	719 European ancestry bipolar disorder cases, 2,787 European ancestry major depressive disorder cases	NA	4q22.3	STPG2, RAP1GDS1	rs9654143-?	NR	4E-7		5.054	[NR] z score decrease	Illumina [6737359] (imputed)	N
1337	chr4	98689151	98689152	rs9654143	33783297	Zai CC	2021-03-30	World J Biol Psychiatry	Genome-wide association study of suicidal behaviour severity in mood disorders.	Suicidality in mood disorders	719 European ancestry bipolar disorder cases, 2,787 European ancestry major depressive disorder cases	NA	4q22.3	STPG2, RAP1GDS1	rs9654143-?	NR	4E-7		5.054	z score decrease	Illumina [6737359] (imputed)	N
1338	chr4	98792892	98792893	rs13118898	33783297	Zai CC	2021-03-30	World J Biol Psychiatry	Genome-wide association study of suicidal behaviour severity in mood disorders.	Suicide attempt severity in mood disorders	719 European ancestry bipolar disorder cases, 2,787 European ancestry major depressive disorder cases	NA	4q22.3	STPG2, RAP1GDS1	rs13118898-?	NR	6E-7		5.002	[NR] z score increase	Illumina [6737359] (imputed)	N
1338	chr4	98792892	98792893	rs13118898	33783297	Zai CC	2021-03-30	World J Biol Psychiatry	Genome-wide association study of suicidal behaviour severity in mood disorders.	Suicidality in mood disorders	719 European ancestry bipolar disorder cases, 2,787 European ancestry major depressive disorder cases	NA	4q22.3	STPG2, RAP1GDS1	rs13118898-?	NR	6E-7		5.002	z score increase	Illumina [6737359] (imputed)	N
1339	chr4	98849825	98849826	rs1215050	27195708	Scott WR	2016-05-19	PLoS One	Investigation of Genetic Variation Underlying Central Obesity amongst South Asians.	Waist-to-hip ratio adjusted for body mass index	10,318 South Asian ancestry individuals	1,922 South Asian ancestry individuals	4q23	STPG2	rs1215050-A	0.6	8E-6		0.05	[0.04-0.08] unit decrease	Affymetrix, Illumina, Perlegen [6571328] (imputed)	N
1339	chr4	98913029	98913030	rs13149516	33783297	Zai CC	2021-03-30	World J Biol Psychiatry	Genome-wide association study of suicidal behaviour severity in mood disorders.	Suicide attempt severity in mood disorders	719 European ancestry bipolar disorder cases, 2,787 European ancestry major depressive disorder cases	NA	4q23	STPG2, RAP1GDS1	rs13149516-?	NR	8E-7		4.942	[NR] z score increase	Illumina [6737359] (imputed)	N
1339	chr4	98913029	98913030	rs13149516	33783297	Zai CC	2021-03-30	World J Biol Psychiatry	Genome-wide association study of suicidal behaviour severity in mood disorders.	Suicidality in mood disorders	719 European ancestry bipolar disorder cases, 2,787 European ancestry major depressive disorder cases	NA	4q23	STPG2, RAP1GDS1	rs13149516-?	NR	8E-7		4.942	z score increase	Illumina [6737359] (imputed)	N
1339	chr4	98927531	98927532	rs11097592	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	4q23	NR	rs11097592-?	NR	1E-26				Affymetrix [NR]	N
1340	chr4	98968076	98968077	rs7666738	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	4q23	Intergenic	rs7666738-?	NR	7E-6		1.3860015	[NR]	Affymetrix [492217] (imputed)	N
1340	chr4	98979581	98979582	rs1727284	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Alcohol consumption (drinks per week)	up to 357,854 European ancestry individuals	NA	4q23	C4orf37	rs1727284-G	0.00147	1E-12		0.235	[0.17-0.3] unit decrease	Illumina [~ 250000] (imputed)	N
1342	chr4	99337880	99337881	rs10516430	19260141	Zemunik T	2009-02-01	Croat Med J	Genome-wide association study of biochemical traits in Korcula Island, Croatia.	Biochemical measures	898 Korculan (founder/genetic isolate) individuals	NA	4q23	RAP1GDS1	rs10516430-A	0.28	6E-6	(triglycerides)	0.16	[0.09-0.23] mmol/L decrease	Illumina [316730]	N
1343	chr4	99392100	99392101	rs17027607	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	4q23	NR	rs17027607-?	NR	4E-11				Affymetrix [NR]	N
1343	chr4	99435031	99435032	rs138134155	32693751	Keene KL	2020-07-22	Stroke	Genome-Wide Association Study Meta-Analysis of Stroke in 22 000 Individuals of African Descent Identifies Novel Associations With Stroke.	Stroke	3,734 African ancestry cases, 18,317 African ancestry controls	NA	4q23	TSPAN5	rs138134155-A	NR	4E-7		1.43	[1.33-1.53]	Affymetrix, Illumina [~ 16900000] (imputed)	N
1343	chr4	99465095	99465096	rs143092959	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Alcohol consumption (drinks per week)	414,343 European ancestry individuals	NA	4q23	TSPAN5	rs143092959-A	0.9957	9E-18		0.14633937	[0.11-0.18] unit increase	Affymetrix [11514936] (imputed)	N
1344	chr4	99499841	99499842	rs846008	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Alcohol consumption (drinks per week)	414,343 European ancestry individuals	NA	4q23	TSPAN5	rs846008-A	0.9975	2E-18		0.19523498	[0.15-0.24] unit increase	Affymetrix [11514936] (imputed)	N
1344	chr4	99567917	99567918	rs114026228	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	445,360 European ancestry individuals	225,112 European ancestry individuals	4q23	TSPAN5	rs114026228-C	0.0121	5E-9		0.05772513	[0.038-0.077] unit decrease	Illumina [up to 29454346] (imputed)	N
1344	chr4	99567917	99567918	rs114026228	28937693	Clarke TK	2017-07-25	Mol Psychiatry	Genome-wide association study of alcohol consumption and genetic overlap with other health-related traits in UK Biobank (N=112 117).	Alcohol consumption	59,088 European ancestry females, 53,029 European ancestry males	NA	4q23	TSPAN5	rs114026228-C	0.005	4E-13	(men)	0.032	[0.024-0.04] unit decrease	Affymetrix [12489781] (imputed)	N
1344	chr4	99592996	99592997	rs72900220	30940813	Kranzler HR	2019-04-02	Nat Commun	Genome-wide association study of alcohol consumption and use disorder in 274,424 individuals from multiple populations.	Alcohol use disorder	34,658 European American cases, 167,346 European American controls, 17,267 African American cases, 39,381 African American controls, 3,449 Latino American cases, 10,726 Latino American controls, 164 East Asian American cases, 1,210 East Asian American controls, 46 South Asian American cases, 144 South Asian American controls	NA	4q23	TSPAN5	rs72900220-A	0.961	3E-9	(AA)	1.2376	[1.17-1.31]	Affymetrix [up to 12500000] (imputed)	N
1344	chr4	99610592	99610593	rs62325464	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Alcohol consumption (drinks per week)	414,343 European ancestry individuals	NA	4q23	EIF4E	rs62325464-A	0.0292	2E-11		0.04425342	[0.031-0.057] unit decrease	Affymetrix [11514936] (imputed)	N
1345	chr4	99630016	99630017	rs193099203	28937693	Clarke TK	2017-07-25	Mol Psychiatry	Genome-wide association study of alcohol consumption and genetic overlap with other health-related traits in UK Biobank (N=112 117).	Alcohol consumption in current drinkers	108,309 European ancestry individuals	NA	4q23	intergenic	rs193099203-T	0.007	3E-25		0.032	[0.026-0.038] unit decrease	Affymetrix [12489781] (imputed)	N
1345	chr4	99630016	99630017	rs193099203	28937693	Clarke TK	2017-07-25	Mol Psychiatry	Genome-wide association study of alcohol consumption and genetic overlap with other health-related traits in UK Biobank (N=112 117).	Alcohol consumption	59,088 European ancestry females, 53,029 European ancestry males	NA	4q23	intergenic	rs193099203-T	0.007	4E-25		0.031	[0.025-0.037] unit decrease	Affymetrix [12489781] (imputed)	N
1345	chr4	99632321	99632322	rs4146003	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Alcohol consumption (drinks per week)	414,343 European ancestry individuals	NA	4q23	EIF4E	rs4146003-A	0.4425	2E-8		0.012675812	[0.0083-0.0171] unit increase	Affymetrix [11514936] (imputed)	N
1345	chr4	99640934	99640935	rs181963476	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Daytime sleep phenotypes	874 European ancestry individuals	NA	4q23	BTF3P13, TSPAN5, EIF4E, TBCAP3	rs181963476-C	NR	8E-6	(daytime resting duration)	0.222	[0.12-0.32] unit increase	Affymetrix [7141204] (imputed)	N
1345	chr4	99668462	99668463	rs1528010	26297903	Fabbri C	2015-08-20	Prog Neuropsychopharmacol Biol Psychiatry	Genetics of long-term treatment outcome in bipolar disorder.	Depressive episodes in bipolar disorder	723 European ancestry cases	NA	4q23	TSPAN5	rs1528010-?	NR	9E-6		0.06	[NR] unit increase	Affymetrix [329806] (imputed)	N
1345	chr4	99678690	99678691	rs12499107	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week)	up to 941,280 European ancestry individuals	NA	4q23	NR	rs12499107-G	0.131202	4E-9	(Conditioned on chr4:100273594, chr4:99713350,chr4:101243023 ,chr4:100000136, chr4:100254520, chr4:100443853, chr4:100286085, chr4:100260679, chr4:100444363, chr4:100239319)	0.012661209	[0.0084-0.0169] unit increase	NR [~ 10000000] (imputed)	N
1345	chr4	99691046	99691047	rs71612659	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Alcohol consumption (drinks per week)	414,343 European ancestry individuals	NA	4q23	EIF4E	rs71612659-A	0.0577	9E-24		0.04810517	[0.039-0.057] unit decrease	Affymetrix [11514936] (imputed)	N
1345	chr4	99698253	99698254	rs10010115	30718321	Sanchez-Roige S	2019-02-04	J Neurosci	Genome-wide association studies of impulsive personality traits (BIS-11 and UPPSP) and drug experimentation in up to 22,861 adult research participants identify loci in the CACNA1I and CADM2 genes.	Sensation seeking	22,745 European ancestry individuals	NA	4q23	TSPAN5, EIF4E	rs10010115-T	0.9258	1E-7		0.087	[0.055-0.120] unit increase	Illumina [11434023] (imputed)	N
1345	chr4	99702113	99702114	rs2866028	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	4q23	NR	rs2866028-A	NR	9E-6	(female)	0.1058	[0.059-0.152] unit increase	Illumina [11133794] (imputed)	N
1345	chr4	99704166	99704167	rs2141284	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol use disorder	57,564 European ancestry cases, 256,395 European ancestry controls	NA	4q23	NR	rs2141284-A	0.0059	5E-14		7.533	[NR] unit decrease	Affymetrix [7003540] (imputed)	N
1345	chr4	99704166	99704167	rs2141284	32372009	de Las Fuentes L	2020-05-05	Mol Psychiatry	Gene-educational attainment interactions in a multi-ancestry genome-wide meta-analysis identify novel blood pressure loci.	Mean arterial pressure x educational attainment (graduated college) interaction (2df)	27,367 European ancestry college graduated individuals, 51,673 European ancestry non-college graduated individuals, 3,605 African ancestry college graduated individuals, 13,060 African ancestry non-college graduated individuals, 291 Asian ancestry college graduated individuals, 457 Asian ancestry non-college graduated individuals, 786 Hispanic/Latin American college graduated individuals, 4,359 Hispanic/Latin American non-college graduated individuals	67,506 European ancestry college graduated individuals, 189,531 European ancestry non-college graduated individuals, 781 African ancestry college graduated individuals, 6,417 African ancestry non-college graduated individuals, 651 Asian ancestry college graduated individuals, 5,296 Asian ancestry non-college graduated individuals, 1,703 Hispanic college graduated individuals, 9,928 Hispanic non-college graduated individuals	4q23	EIF4E	rs2141284-A	NR	7E-9		1.01	[0.27-1.75] unit increase	Affymetrix, Illumina [~ 18800000] (imputed)	N
1345	chr4	99704166	99704167	rs2141284	32372009	de Las Fuentes L	2020-05-05	Mol Psychiatry	Gene-educational attainment interactions in a multi-ancestry genome-wide meta-analysis identify novel blood pressure loci.	Mean arterial pressure x educational attainment (graduated college) interaction (2df)	27,367 European ancestry college graduated individuals, 51,673 European ancestry non-college graduated individuals, 3,605 African ancestry college graduated individuals, 13,060 African ancestry non-college graduated individuals, 291 Asian ancestry college graduated individuals, 457 Asian ancestry non-college graduated individuals, 786 Hispanic/Latin American college graduated individuals, 4,359 Hispanic/Latin American non-college graduated individuals	67,506 European ancestry college graduated individuals, 189,531 European ancestry non-college graduated individuals, 781 African ancestry college graduated individuals, 6,417 African ancestry non-college graduated individuals, 651 Asian ancestry college graduated individuals, 5,296 Asian ancestry non-college graduated individuals, 1,703 Hispanic college graduated individuals, 9,928 Hispanic non-college graduated individuals	4q23	EIF4E	rs2141284-A	0.01	2E-7	(EA)	0.9856	[0.23-1.74] unit increase	Affymetrix, Illumina [~ 18800000] (imputed)	N
1345	chr4	99713349	99713350	rs144198753	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Problematic alcohol use	435,563 European ancestry individuals	NA	4q23	NR	rs144198753-T	0.0122	2E-22		9.726	[NR] z score decrease	Affymetrix [14069427] (imputed)	N
1345	chr4	99713349	99713350	rs144198753	31998841	Thompson A	2020-01-15	Sci Adv	Functional validity, role, and implications of heavy alcohol consumption genetic loci.	Alcohol consumption (heavy vs. light/non-drinkers)	21,967 British ancestry cases, 103,282 British ancestry controls	47,967 European ancestry individuals	4q23	BTF3P13	rs144198753-C	0.991	4E-29		10.994	NR z score increase	Affymetrix [11141077] (imputed)	N
1345	chr4	99713349	99713350	rs144198753	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Alcohol consumption (drinks per week)	up to 357,854 European ancestry individuals	NA	4q23	EIF4E	rs144198753-T	0.00935	4E-68		0.23	[0.2-0.26] unit decrease	Illumina [~ 250000] (imputed)	N
1345	chr4	99713349	99713350	rs144198753	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week)	up to 941,280 European ancestry individuals	NA	4q23	NR	rs144198753-T	0.016315	1E-12	(Conditioned on chr4:101243023, chr4:100000136,chr4:100254520 ,chr4:100443853, chr4:100286085, chr4:100260679, chr4:100444363, chr4:100239319)	0.04182707	[0.03-0.053] unit decrease	NR [~ 10000000] (imputed)	N
1345	chr4	99713349	99713350	rs144198753	28937693	Clarke TK	2017-07-25	Mol Psychiatry	Genome-wide association study of alcohol consumption and genetic overlap with other health-related traits in UK Biobank (N=112 117).	Alcohol consumption	59,088 European ancestry females, 53,029 European ancestry males	NA	4q23	intergenic	rs144198753-T	0.008	5E-16	(women)	0.033	[0.025-0.041] unit decrease	Affymetrix [12489781] (imputed)	N
1345	chr4	99723759	99723760	rs28463044	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q23	NR	rs28463044-C	0.2509	6E-10	(VCL)	0.1675	NR unit decrease	Illumina [1671387] (imputed)	N
1346	chr4	99751793	99751794	rs145441283	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	445,360 European ancestry individuals	225,112 European ancestry individuals	4q23	EIF4E	rs145441283-G	0.0125	2E-11		0.060972594	[0.043-0.079] unit decrease	Illumina [up to 29454346] (imputed)	N
1346	chr4	99759131	99759132	rs4699680	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Alcohol consumption (drinks per week)	414,343 European ancestry individuals	NA	4q23	EIF4E	rs4699680-A	0.9603	4E-15		0.044903457	[0.034-0.056] unit increase	Affymetrix [11514936] (imputed)	N
1346	chr4	99759131	99759132	rs4699680	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	4q23	NR	rs4699680-A	0.957	6E-22		0.0313325	[0.025-0.038] unit increase	NR [~ 9732723] (imputed)	N
1346	chr4	99786511	99786517	rs539009611	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	4q23	NR	rs539009611-A	NR	1E-9		0.017	[0.012-0.022] unit increase	Affymetrix [9000000] (imputed)	N
1346	chr4	99788479	99788480	rs12650112	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	4q23	EIF4E	rs12650112-C	0.646595	1E-14		0.0155669	[0.012-0.02] unit decrease	Affymetrix [NR] (imputed)	N
1346	chr4	99790070	99790073	rs1446479677	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q23	NR	rs1446479677-G	0.4443	2E-8	(VCL)	0.1346	NR unit decrease	Illumina [1671387] (imputed)	N
1346	chr4	99795462	99795463	rs62323189	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	4q23	Intergenic	rs62323189-T	0.7151	3E-8		0.012	[0.0077-0.0163] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1346	chr4	99796783	99796784	rs7665590	23000144	Nakamura M	2012-09-18	Am J Hum Genet	Genome-wide association study identifies TNFSF15 and POU2AF1 as susceptibility loci for primary biliary cirrhosis in the Japanese population.	Primary biliary cholangitis	487 Japanese ancestry cases, 476 Japanese ancestry controls	787 Japanese ancestry cases, 615 Japanese ancestry controls	4q23	NFKB1	rs7665590-G	NR	1E-7		1.35	[1.21-1.52]	Affymetrix [421245]	N
1346	chr4	99818122	99818123	rs34073334	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q23	NR	rs34073334-T	0.1777	3E-10	(VCL)	0.2019	NR unit decrease	Illumina [1671387] (imputed)	N
1346	chr4	99848623	99848626	rs199646819	29773799	Horikoshi M	2018-05-17	Nat Commun	Elucidating the genetic architecture of reproductive ageing in the Japanese population.	Menopause (age at onset)	43,861 Japanese ancestry women	32,545 European ancestry women	4q23	EIF4E	rs199646819-A	0.61	3E-8	(japanese)	0.15	[0.091-0.209] year increase	Illumina [at least 532488] (imputed)	N
1346	chr4	99848623	99848626	rs199646819	29773799	Horikoshi M	2018-05-17	Nat Commun	Elucidating the genetic architecture of reproductive ageing in the Japanese population.	Menopause (age at onset)	43,861 Japanese ancestry women	32,545 European ancestry women	4q23	EIF4E	rs199646819-A	0.61	1E-8				Illumina [at least 532488] (imputed)	N
1347	chr4	99877401	99877402	rs1230148	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Alcohol consumption (drinks per week)	414,343 European ancestry individuals	NA	4q23	METAP1	rs1230148-T	0.3642	2E-9		0.013839498	[0.0093-0.0184] unit decrease	Affymetrix [11514936] (imputed)	N
1347	chr4	99892474	99892475	rs115809613	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	4q23	Intergenic	rs115809613-A	NR	1E-8	(between families)	5.688	unit decrease	Affymetrix [up to 15107142] (imputed)	N
1347	chr4	99911505	99911506	rs192822960	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Alcohol consumption (drinks per week)	414,343 European ancestry individuals	NA	4q23	METAP1	rs192822960-A	0.0015	2E-16		0.2379943	[0.18-0.29] unit decrease	Affymetrix [11514936] (imputed)	N
1347	chr4	99941137	99941138	rs146788033	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	4q23	NR	rs146788033-G	0.02	1E-5		0.78	[0.66-0.9]	Illumina [8468885] (imputed)	N
1347	chr4	99941137	99941138	rs146788033	30336701	Sanchez-Roige S	2018-10-19	Am J Psychiatry	Genome-Wide Association Study Meta-Analysis of the Alcohol Use Disorders Identification Test (AUDIT) in Two Population-Based Cohorts.	Alcohol use disorder (total score)	141,932 European ancestry individuals	NA	4q23	METAP1	rs146788033-A	NR	1E-25		10.48	[NR] z score increase	NR [16213998]	N
1347	chr4	99941137	99941138	rs146788033	30336701	Sanchez-Roige S	2018-10-19	Am J Psychiatry	Genome-Wide Association Study Meta-Analysis of the Alcohol Use Disorders Identification Test (AUDIT) in Two Population-Based Cohorts.	Alcohol use disorder (dependence and problematic use scores)	121,604 British ancestry individuals	NA	4q23	METAP1	rs146788033-G	NR	1E-9		0.04	[NR] unit decrease	NR [16213998]	N
1347	chr4	99941137	99941138	rs146788033	30336701	Sanchez-Roige S	2018-10-19	Am J Psychiatry	Genome-Wide Association Study Meta-Analysis of the Alcohol Use Disorders Identification Test (AUDIT) in Two Population-Based Cohorts.	Alcohol use disorder (consumption score)	121,604 British ancestry individuals	NA	4q23	METAP1	rs146788033-G	NR	4E-17		0.04	[0.032-0.048] unit decrease	NR [16213998]	N
1347	chr4	99959931	99959932	rs17216080	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	4q23	NR	rs17216080-C	NR	5E-13		0.0186	[0.014-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
1347	chr4	99959931	99959932	rs17216080	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	4q23	NR	rs17216080-C	NR	1E-12		0.0183	[0.013-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
1347	chr4	99967690	99967691	rs1230210	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q23	NR	rs1230210-T	0.2491	4E-20	(VCL)	0.2462	NR unit decrease	Illumina [1671387] (imputed)	N
1347	chr4	99991085	99991086	rs11292055	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q23	NR	rs11292055-A	0.0993	7E-9	(VCL)	0.2388	NR unit decrease	Illumina [1671387] (imputed)	N
1347	chr4	99991641	99991642	rs7662987	24665060	Argos M	2014-03-24	J Med Genet	Genome-wide association study of smoking behaviours among Bangladeshi adults.	Smoking initiation	754 Bangladeshi ancestry never smoker males, 2,565 Bangladeshi ancestry never smoker females, 1,837 Bangladeshi ancestry ever smoker males, 198 Bangladeshi ancestry ever smoker females	NA	4q23	NR	rs7662987-?	NR	9E-6	(females)			Illumina [1211988] (imputed)	N
1347	chr4	99992650	99992651	rs28730650	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ADH5	5,357 Icelandic ancestry individuals	NA	4q23		rs28730650-A	0.04756	2E-27		0.461289	[0.38-0.54] unit decrease	Illumina [7506463] (imputed)	N
1347	chr4	99993074	99993075	rs13832	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q23	NR	rs13832-C	0.3275	3E-27	(VCL)	0.2611	NR unit decrease	Illumina [1671387] (imputed)	N
1347	chr4	99993150	99993151	rs1803037	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q23	NR	rs1803037-T	0.08537	1E-8	(VCL)	0.2473	NR unit decrease	Illumina [1671387] (imputed)	N
1347	chr4	99994404	99994405	rs29001570	28937693	Clarke TK	2017-07-25	Mol Psychiatry	Genome-wide association study of alcohol consumption and genetic overlap with other health-related traits in UK Biobank (N=112 117).	Alcohol consumption in current drinkers	108,309 European ancestry individuals	NA	4q23	ADH5	rs29001570-C	0.006	1E-16		0.025	[0.019-0.031] unit decrease	Affymetrix [12489781] (imputed)	N
1347	chr4	99994404	99994405	rs29001570	28937693	Clarke TK	2017-07-25	Mol Psychiatry	Genome-wide association study of alcohol consumption and genetic overlap with other health-related traits in UK Biobank (N=112 117).	Alcohol consumption	59,088 European ancestry females, 53,029 European ancestry males	NA	4q23	ADH5	rs29001570-C	0.006	1E-9	(women)	0.025	[0.017-0.033] unit decrease	Affymetrix [12489781] (imputed)	N
1347	chr4	99994404	99994405	rs29001570	28937693	Clarke TK	2017-07-25	Mol Psychiatry	Genome-wide association study of alcohol consumption and genetic overlap with other health-related traits in UK Biobank (N=112 117).	Alcohol consumption	59,088 European ancestry females, 53,029 European ancestry males	NA	4q23	ADH5	rs29001570-C	0.006	1E-18		0.026	[0.02-0.032] unit decrease	Affymetrix [12489781] (imputed)	N
1347	chr4	99994404	99994405	rs29001570	28937693	Clarke TK	2017-07-25	Mol Psychiatry	Genome-wide association study of alcohol consumption and genetic overlap with other health-related traits in UK Biobank (N=112 117).	Alcohol consumption	59,088 European ancestry females, 53,029 European ancestry males	NA	4q23	ADH5	rs29001570-C	0.006	1E-10	(men)	0.028	[0.02-0.036] unit decrease	Affymetrix [12489781] (imputed)	N
1347	chr4	99996372	99996373	rs1154416	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	4q23		rs1154416-T	NR	2E-21		0.0222	[0.018-0.027] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
1347	chr4	99998334	99998335	rs4699700	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	4q23	NR	rs4699700-G	NR	3E-11		0.0223	[0.016-0.029] unit increase	Affymetrix [9000000] (imputed)	N
1347	chr4	99998334	99998335	rs4699700	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	4q23	NR	rs4699700-G	NR	1E-9		0.0205	[0.014-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
1347	chr4	100000135	100000136	rs1154414	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q23	NR	rs1154414-C	0.1341	7E-9	(SERPINC1)	0.003857	NR unit increase	Illumina [1671387] (imputed)	N
1347	chr4	100000135	100000136	rs1154414	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week)	up to 941,280 European ancestry individuals	NA	4q23	NR	rs1154414-C	0.141063	4E-17	(Conditioned on chr4:100254520, chr4:100443853,chr4:100286085 ,chr4:100260679, chr4:100444363, chr4:100239319)	0.017630372	[0.014-0.022] unit increase	NR [~ 10000000] (imputed)	N
1347	chr4	100001655	100001655	rs772513171	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	4q23	NR	rs772513171-CTTTT	0.328223	3E-9		0.00828938	[0.0056-0.011] unit increase	Affymetrix [16578495] (imputed)	N
1347	chr4	100006644	100006645	rs1154410	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q23	NR	rs1154410-A	0.2456	5E-30	(VCL)	0.2991	NR unit decrease	Illumina [1671387] (imputed)	N
1347	chr4	100007211	100007211	rs77642031	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	4q23	ADH5	rs77642031-AAAACAAACAAAC	0.602931	4E-10		0.0145811755	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
1348	chr4	100009737	100009738	rs1154401	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	4q23	NR	rs1154401-G	0.337803	3E-18		0.028057	[0.022-0.034] unit increase	Affymetrix [16577313] (imputed)	N
1348	chr4	100010009	100010010	rs1154400	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q23	NR	rs1154400-C	0.2979	3E-24	(VCL)	0.2565	NR unit decrease	Illumina [1671387] (imputed)	N
1348	chr4	100011170	100011171	rs13132688	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	4q23	ADH5	rs13132688-A	0.0060	9E-6	(Diet carbohydrate )	0.02	[NR] %energy increase	Illumina [899892]	N
1348	chr4	100014548	100014549	rs376570195	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q23	NR	rs376570195-A	0.3885	1E-11	(VCL)	0.1706	NR unit increase	Illumina [1671387] (imputed)	N
1348	chr4	100014804	100014805	rs2602836	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q23	NR	rs2602836-A	0.4477	2E-22	(VCL)	0.2243	NR unit decrease	Illumina [1671387] (imputed)	N
1348	chr4	100014804	100014805	rs2602836	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	4q23	NR	rs2602836-A	NR	6E-6		0.018	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1348	chr4	100014804	100014805	rs2602836	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	HDL cholesterol levels	34,930 East Asian ancestry individuals, 187,167 European ancestry individuals	8,741 Chinese ancestry individuals	4q23	ADH5	rs2602836-A	0.427	7E-7	(Trans-ethnic initial)	0.0192	[0.013-0.026] unit increase (EA Beta values)	Affymetrix, Illumina [~ 1900000] (imputed)	N
1348	chr4	100014804	100014805	rs2602836	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	4q23	ADH5	rs2602836-A	0.44	5E-8		0.019	[NR] unit increase	NR [NR] (imputed)	N
1348	chr4	100018259	100018260	rs6831257	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	4q23	NR	rs6831257-G	0.340111	3E-11		0.00797245	[0.0054-0.0105] unit increase	Affymetrix [16585854] (imputed)	N
1348	chr4	100018259	100018260	rs6831257	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	4q23	NR	rs6831257-G	0.340111	8E-8		0.00798864	[0.0051-0.0109] unit increase	Affymetrix [16585866] (imputed)	N
1348	chr4	100019088	100019089	rs551676206	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	4q23		rs551676206-C	NR	2E-10		0.0784	[0.054-0.103] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
1348	chr4	100021128	100021129	rs149675684	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	4q23	NR	rs149675684-G	0.002646000000000037	2E-10		0.0540325	[0.037-0.071] unit increase	Affymetrix [16582909] (imputed)	N
1348	chr4	100021128	100021129	rs149675684	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	4q23	NR	rs149675684-G	0.002526999999999946	3E-12		0.0846499	[0.061-0.109] unit increase	Affymetrix [16582621] (imputed)	N
1348	chr4	100021128	100021129	rs149675684	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	4q23	NR	rs149675684-G	0.002646000000000037	1E-6		0.0474941	[0.028-0.067] unit increase	Affymetrix [16582965] (imputed)	N
1348	chr4	100021128	100021129	rs149675684	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	4q23	NR	rs149675684-G	0.002526999999999946	6E-10		0.0785354	[0.053-0.104] unit increase	Affymetrix [16582614] (imputed)	N
1348	chr4	100022570	100022571	rs1453873	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q23	ADH5	rs1453873-C	0.74171875	2E-25	(ADH5, 11369_23_3)	0.2839609	[0.23-0.34] unit decrease	Illumina [> 1000000] (imputed)	N
1348	chr4	100029144	100029145	rs2602856	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Problematic alcohol use	435,563 European ancestry individuals	NA	4q23	NR	rs2602856-A	0.6611	1E-8		5.738	[NR] z score decrease	Affymetrix [14069427] (imputed)	N
1348	chr4	100035196	100035208	rs975464688	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q23	NR	rs975464688-T	0.3275	4E-29	(VCL)	0.2693	NR unit decrease	Illumina [1671387] (imputed)	N
1348	chr4	100039548	100039549	rs2851256	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large HDL	115,082 European ancestry individuals	NA	4q23		rs2851256-G	0.270593	8E-10		0.0251906	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
1348	chr4	100039548	100039549	rs2851256	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	4q23		rs2851256-G	0.27061	1E-8		0.0235708	[0.015-0.032] unit decrease	NR [11722792] (imputed)	N
1348	chr4	100042220	100042221	rs6532795	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ADH5	5,357 Icelandic ancestry individuals	NA	4q23		rs6532795-T	0.2879	4E-33		0.246345	[0.21-0.29] unit increase	Illumina [7506463] (imputed)	N
1348	chr4	100042220	100042221	rs6532795	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	4q23		rs6532795-C	NR	8E-12		0.0173	[0.012-0.022] unit decrease	Affymetrix, Illumina [20535842] (imputed)	N
1348	chr4	100042220	100042221	rs6532795	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	4q23		rs6532795-C	NR	3E-11		0.0169	[0.012-0.022] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1348	chr4	100042220	100042221	rs6532795	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	4q23	intergenic	rs6532795-T	0.2812	1E-8		0.0168	[0.011-0.023] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1348	chr4	100042241	100042242	rs6532796	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	4q23	RP11-696N14.1	rs6532796-G	0.706582	3E-18		0.021591598	[0.017-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1348	chr4	100042241	100042242	rs6532796	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	4q23	RP11-696N14.1	rs6532796-G	0.706573	3E-13		0.01807556	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1348	chr4	100042241	100042242	rs6532796	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q23	NR	rs6532796-A	0.288181	1E-11				Affymetrix, Illumina [17210439] (imputed)	N
1348	chr4	100042241	100042242	rs6532796	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	4q23	NR	rs6532796-A	0.294318	7E-14		0.015841	[0.012-0.02] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1348	chr4	100042241	100042242	rs6532796	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	4q23	ADH4	rs6532796-A	0.293761	1E-9		0.0131755	[0.0089-0.0174] unit increase	Affymetrix [NR] (imputed)	N
1348	chr4	100042241	100042242	rs6532796	30642921	de Vries PS	2019-01-14	Blood	A genome-wide association study identifies new loci for factor VII and implicates factor VII in ischemic stroke etiology.	Factor VII activity or levels	24,075 European ancestry individuals, 3,420 African American individuals	NA	4q23	ADH4	rs6532796-G	0.7	4E-11		0.013	NR unit increase	Affymetrix, Illumina [10044948] (imputed)	N
1348	chr4	100042241	100042242	rs6532796	30642921	de Vries PS	2019-01-14	Blood	A genome-wide association study identifies new loci for factor VII and implicates factor VII in ischemic stroke etiology.	Factor VII activity	20,014 European ancestry individuals, 3,420 African American individuals	NA	4q23	ADH4	rs6532796-G	0.7	3E-13		0.016	[0.012-0.02] unit increase	Affymetrix, Illumina [10044948] (imputed)	N
1348	chr4	100042241	100042242	rs6532796	30642921	de Vries PS	2019-01-14	Blood	A genome-wide association study identifies new loci for factor VII and implicates factor VII in ischemic stroke etiology.	Factor VII activity	20,014 European ancestry individuals, 3,420 African American individuals	NA	4q23	ADH4	rs6532796-G	0.69	1E-12	(EA)	0.017	NR unit increase	Affymetrix, Illumina [10044948] (imputed)	N
1348	chr4	100042261	100042262	rs3828541	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q23	NR	rs3828541-G	0.4251	7E-10	(VCL)	0.1521	NR unit increase	Illumina [1671387] (imputed)	N
1348	chr4	100044110	100044111	rs2851251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	4q23		rs2851251-A	0.273014	2E-9		0.0244728	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
1348	chr4	100045615	100045616	rs1126673	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	4q23	ADH4	rs1126673-C	0.302608	1E-10		0.013906	[0.0097-0.0182] unit decrease	Affymetrix [NR] (imputed)	N
1348	chr4	100046055	100046056	rs200917013	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	4q23	NR	rs200917013-?	NR	5E-9		0.0167	[0.012-0.022] unit decrease	Affymetrix [5701386] (imputed)	N
1348	chr4	100046057	100046058	rs869202044	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q23	NR	rs869202044-CA	0.2875	2E-38	(VCL)	0.3115	NR unit decrease	Illumina [1671387] (imputed)	N
1348	chr4	100046684	100046685	rs1573495	24166409	Gelernter J	2014-01-01	Mol Psychiatry	Genome-wide association study of alcohol dependence:significant findings in African- and European-Americans including novel risk loci.	Alcohol dependence	4,629 African American individuals, 5,131 European ancestry individuals	801 African American individuals, 1,746 European ancestry individuals	4q23	ADH4	rs1573495-?	0.0701	2E-6	(AA)	0.0118	NR unit increase (AA, GCD Discovery)	Illumina [up to 10421983] (imputed)	N
1348	chr4	100047157	100047157	rs5860563	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	4q23		rs5860563-C	0.300048	8E-10		0.024391	[0.017-0.032] unit increase	NR [11722792] (imputed)	N
1348	chr4	100047157	100047157	rs5860563	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	4q23		rs5860563-C	0.30006	2E-12		0.0292399	[0.021-0.037] unit increase	NR [11722792] (imputed)	N
1348	chr4	100047157	100047157	rs5860563	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	4q23		rs5860563-C	0.300048	3E-10		0.0248859	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
1348	chr4	100047157	100047157	rs5860563	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	4q23		rs5860563-C	0.300048	7E-10		0.0245959	[0.017-0.032] unit increase	NR [11722792] (imputed)	N
1348	chr4	100047157	100047157	rs5860563	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	4q23		rs5860563-C	0.300048	5E-10		0.0247483	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
1348	chr4	100047157	100047157	rs5860563	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	4q23	NR	rs5860563-C	0.300674	2E-55		0.0138096	[0.012-0.016] unit increase	Affymetrix [16582909] (imputed)	N
1348	chr4	100047157	100047157	rs5860563	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	4q23	NR	rs5860563-C	0.300674	4E-42		0.01377	[0.012-0.016] unit increase	Affymetrix [16582965] (imputed)	N
1348	chr4	100047157	100047157	rs5860563	30940813	Kranzler HR	2019-04-02	Nat Commun	Genome-wide association study of alcohol consumption and use disorder in 274,424 individuals from multiple populations.	Alcohol use disorder	34,658 European American cases, 167,346 European American controls, 17,267 African American cases, 39,381 African American controls, 3,449 Latino American cases, 10,726 Latino American controls, 164 East Asian American cases, 1,210 East Asian American controls, 46 South Asian American cases, 144 South Asian American controls	NA	4q23	ADH4	rs5860563-?	0.722	1E-9		6.21	NR z score decrease	Affymetrix [up to 12500000] (imputed)	N
1348	chr4	100047159	100047159	rs397767360	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	4q23		rs397767360-CA	NR	2E-64		0.0431	[0.038-0.048] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
1348	chr4	100048413	100048414	rs1126671	24166409	Gelernter J	2014-01-01	Mol Psychiatry	Genome-wide association study of alcohol dependence:significant findings in African- and European-Americans including novel risk loci.	Alcohol dependence	4,629 African American individuals, 5,131 European ancestry individuals	801 African American individuals, 1,746 European ancestry individuals	4q23	ADH4	rs1126671-?	NR	5E-6				Illumina [up to 10421983] (imputed)	N
1348	chr4	100048505	100048506	rs6836440	24166409	Gelernter J	2014-01-01	Mol Psychiatry	Genome-wide association study of alcohol dependence:significant findings in African- and European-Americans including novel risk loci.	Alcohol dependence	4,629 African American individuals, 5,131 European ancestry individuals	801 African American individuals, 1,746 European ancestry individuals	4q23	ADH4	rs6836440-?	0.0701	2E-6	(AA)	0.0118	NR unit increase (AA, GCD Discovery)	Illumina [up to 10421983] (imputed)	N
1348	chr4	100051818	100051819	rs4699710	24166409	Gelernter J	2014-01-01	Mol Psychiatry	Genome-wide association study of alcohol dependence:significant findings in African- and European-Americans including novel risk loci.	Alcohol dependence	4,629 African American individuals, 5,131 European ancestry individuals	801 African American individuals, 1,746 European ancestry individuals	4q23	ADH4	rs4699710-?	NR	6E-6				Illumina [up to 10421983] (imputed)	N
1348	chr4	100052732	100052733	rs1126670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	4q23		rs1126670-C	0.301259	1E-9		0.0256416	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
1348	chr4	100052732	100052733	rs1126670	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Serum alkaline phosphatase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	4q23	ADH4	rs1126670-?		5E-8		0.0453	[0.029-0.062] unit increase	Illumina [31500000] (imputed)	N
1348	chr4	100052732	100052733	rs1126670	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q23	NR	rs1126670-A	0.758814	2E-26				Affymetrix, Illumina [24588908] (imputed)	N
1348	chr4	100052732	100052733	rs1126670	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	4q23	NR	rs1126670-A	0.69589	1E-27		0.02162	[0.018-0.026] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1348	chr4	100052732	100052733	rs1126670	24166409	Gelernter J	2014-01-01	Mol Psychiatry	Genome-wide association study of alcohol dependence:significant findings in African- and European-Americans including novel risk loci.	Alcohol dependence	4,629 African American individuals, 5,131 European ancestry individuals	801 African American individuals, 1,746 European ancestry individuals	4q23	ADH4	rs1126670-?	NR	3E-6				Illumina [up to 10421983] (imputed)	N
1348	chr4	100053893	100053894	rs6822348	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Tyrosine levels	114,913 European ancestry individuals	NA	4q23		rs6822348-A	0.301183	1E-19		0.0406162	[0.032-0.049] unit increase	NR [11722792] (imputed)	N
1348	chr4	100053893	100053894	rs6822348	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	4q23	ADH4	rs6822348-A	0.30186	9E-86		0.00482212	[0.0043-0.0053] unit increase	Affymetrix [13995440] (imputed)	N
1348	chr4	100053893	100053894	rs6822348	24166409	Gelernter J	2014-01-01	Mol Psychiatry	Genome-wide association study of alcohol dependence:significant findings in African- and European-Americans including novel risk loci.	Alcohol dependence	4,629 African American individuals, 5,131 European ancestry individuals	801 African American individuals, 1,746 European ancestry individuals	4q23	ADH4	rs6822348-?	NR	3E-6				Illumina [up to 10421983] (imputed)	N
1348	chr4	100053893	100053894	rs6822348	24166409	Gelernter J	2014-01-01	Mol Psychiatry	Genome-wide association study of alcohol dependence:significant findings in African- and European-Americans including novel risk loci.	Alcohol dependence	2,415 African American cases, 1,798 African American controls, 2,669 European ancestry cases, 2,002 European ancestry controls	324 African American cases, 327 African American controls, 2,269 European ancestry cases, 2,975 European ancestry controls	4q23	ADH4	rs6822348-T	0.17	3E-6	(AA)	1.34	NR (AA, GCD Discovery)	Illumina [up to 10421983] (imputed)	N
1348	chr4	100054790	100054791	rs796100782	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q23	NR	rs796100782-A	0.4251	7E-10	(VCL)	0.1521	NR unit increase	Illumina [1671387] (imputed)	N
1348	chr4	100054826	100054827	rs6532798	24166409	Gelernter J	2014-01-01	Mol Psychiatry	Genome-wide association study of alcohol dependence:significant findings in African- and European-Americans including novel risk loci.	Alcohol dependence	4,629 African American individuals, 5,131 European ancestry individuals	801 African American individuals, 1,746 European ancestry individuals	4q23	ADH4	rs6532798-?	NR	7E-6				Illumina [up to 10421983] (imputed)	N
1348	chr4	100055172	100055173	rs7672728	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q23	NR	rs7672728-G	0.2474	2E-31	(VCL)	0.3049	NR unit decrease	Illumina [1671387] (imputed)	N
1348	chr4	100055799	100055800	rs10017466	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q23	NR	rs10017466-C	0.3066	8E-36	(VCL)	0.2983	NR unit decrease	Illumina [1671387] (imputed)	N
1348	chr4	100056997	100056998	rs3805322	22960999	Wu C	2012-09-09	Nat Genet	Genome-wide association analyses of esophageal squamous cell carcinoma in Chinese identify multiple susceptibility loci and gene-environment interactions.	Esophageal cancer  (alcohol interaction)	2,031 Han Chinese ancestry cases, 2,044 Han Chinese ancestry controls	8,092 Chinese ancestry cases, 8,620 Chinese ancestry controls	4q23	ADH4	rs3805322-?	0.51	6E-7		1.23	[1.14-1.33]	NR [NR]	N
1348	chr4	100058883	100058884	rs6532800	24166409	Gelernter J	2014-01-01	Mol Psychiatry	Genome-wide association study of alcohol dependence:significant findings in African- and European-Americans including novel risk loci.	Alcohol dependence	4,629 African American individuals, 5,131 European ancestry individuals	801 African American individuals, 1,746 European ancestry individuals		ADH4	rs6532800-?	0.07	1E-6	(AA)	0.012	NR unit increase (AA, GCD Discovery)	Illumina [up to 10421983] (imputed)	N
1348	chr4	100060835	100060836	rs13148577	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q23	NR	rs13148577-A	0.3885	1E-11	(VCL)	0.1706	NR unit increase	Illumina [1671387] (imputed)	N
1348	chr4	100063524	100063525	rs6831352	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q23	NR	rs6831352-T	0.2875	2E-38	(VCL)	0.3115	NR unit decrease	Illumina [1671387] (imputed)	N
1348	chr4	100063524	100063525	rs6831352	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	4q23	NR	rs6831352-T	0.302451	3E-58		0.0198883	[0.017-0.022] unit increase	Affymetrix [16582621] (imputed)	N
1348	chr4	100063524	100063525	rs6831352	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	4q23	NR	rs6831352-T	0.302451	1E-50		0.0198251	[0.017-0.022] unit increase	Affymetrix [16582614] (imputed)	N
1348	chr4	100063524	100063525	rs6831352	24166409	Gelernter J	2014-01-01	Mol Psychiatry	Genome-wide association study of alcohol dependence:significant findings in African- and European-Americans including novel risk loci.	Alcohol dependence	4,629 African American individuals, 5,131 European ancestry individuals	801 African American individuals, 1,746 European ancestry individuals	4q23	ADH4	rs6831352-?	NR	2E-6				Illumina [up to 10421983] (imputed)	N
1348	chr4	100063524	100063525	rs6831352	24166409	Gelernter J	2014-01-01	Mol Psychiatry	Genome-wide association study of alcohol dependence:significant findings in African- and European-Americans including novel risk loci.	Alcohol dependence	4,629 African American individuals, 5,131 European ancestry individuals	801 African American individuals, 1,746 European ancestry individuals	4q23	ADH4	rs6831352-?	0.178	9E-6	(AA)	0.0174	NR unit increase (AA, GCD Discovery)	Illumina [up to 10421983] (imputed)	N
1348	chr4	100065508	100065509	rs1800759	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	4q23	ADH4, ADH6	rs1800759-T	0.39	5E-40		13.2	z-score increase	Affymetrix [4311822] (imputed)	N
1348	chr4	100065508	100065509	rs1800759	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	4q23	ADH4, ADH6	rs1800759-T	0.39	3E-14		7.6	z-score increase	Affymetrix [4314223] (imputed)	N
1348	chr4	100065508	100065509	rs1800759	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q23	NR	rs1800759-T	0.4425	2E-28	(VCL)	0.2599	NR unit decrease	Illumina [1671387] (imputed)	N
1348	chr4	100065508	100065509	rs1800759	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q23	ADH4	rs1800759-G	0.62234375	4E-10	(ADH4, 8325_37_3)	0.15660022	[0.11-0.21] unit increase	Illumina [> 1000000] (imputed)	N
1348	chr4	100065916	100065917	rs6858148	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ADH4	5,368 Icelandic ancestry individuals	NA	4q23		rs6858148-C	0.3487	4E-16		0.160396	[0.12-0.2] unit decrease	Illumina [7506463] (imputed)	N
1348	chr4	100066083	100066084	rs3762894	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	4q23	NR	rs3762894-C	NR	1E-11		0.0219	[0.016-0.028] unit decrease	Affymetrix [9000000] (imputed)	N
1348	chr4	100066083	100066084	rs3762894	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q23	NR	rs3762894-C	0.1882	1E-9	(SERPINC1)	0.003794	NR unit increase	Illumina [1671387] (imputed)	N
1348	chr4	100066124	100066125	rs4699716	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large HDL	115,082 European ancestry individuals	NA	4q23		rs4699716-G	0.728065	5E-11		0.0275358	[0.019-0.036] unit decrease	NR [11722792] (imputed)	N
1348	chr4	100066124	100066125	rs4699716	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large HDL	115,082 European ancestry individuals	NA	4q23		rs4699716-G	0.728065	6E-12		0.0288655	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
1348	chr4	100066124	100066125	rs4699716	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large HDL particles	115,082 European ancestry individuals	NA	4q23		rs4699716-G	0.728065	9E-9		0.0241213	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
1348	chr4	100066124	100066125	rs4699716	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	4q23		rs4699716-G	0.728065	4E-10		0.0260795	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
1348	chr4	100066124	100066125	rs4699716	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	4q23		rs4699716-G	0.728065	4E-10		0.0263337	[0.018-0.035] unit decrease	NR [11722792] (imputed)	N
1348	chr4	100066124	100066125	rs4699716	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	4q23		rs4699716-G	0.728065	7E-11		0.0269019	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
1348	chr4	100066331	100066332	rs4148883	24166409	Gelernter J	2014-01-01	Mol Psychiatry	Genome-wide association study of alcohol dependence:significant findings in African- and European-Americans including novel risk loci.	Alcohol dependence	4,629 African American individuals, 5,131 European ancestry individuals	801 African American individuals, 1,746 European ancestry individuals	4q23	LOC100507053	rs4148883-?	NR	7E-6				Illumina [up to 10421983] (imputed)	N
1348	chr4	100068113	100068114	rs116203444	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	4q23	NR	rs116203444-C	0.03	4E-6		0.8	[0.7-0.9]	Illumina [8468885] (imputed)	N
1348	chr4	100071923	100071924	rs17028615	24625756	Yu B	2014-03-13	PLoS Genet	Genetic determinants influencing human serum metabolome among African Americans.	Serum metabolite levels	1,260 African American individuals	NA	4q23	ADH4	rs17028615-A	0.77	2E-15	(Hexadecanedioate)	0.19	[NR] unit increase	Affymetrix [2341704] (imputed)	N
1348	chr4	100071923	100071924	rs17028615	24166409	Gelernter J	2014-01-01	Mol Psychiatry	Genome-wide association study of alcohol dependence:significant findings in African- and European-Americans including novel risk loci.	Alcohol dependence	4,629 African American individuals, 5,131 European ancestry individuals	801 African American individuals, 1,746 European ancestry individuals	4q23	LOC100507053	rs17028615-?	NR	3E-8				Illumina [up to 10421983] (imputed)	N
1348	chr4	100071923	100071924	rs17028615	24166409	Gelernter J	2014-01-01	Mol Psychiatry	Genome-wide association study of alcohol dependence:significant findings in African- and European-Americans including novel risk loci.	Alcohol dependence	4,629 African American individuals, 5,131 European ancestry individuals	801 African American individuals, 1,746 European ancestry individuals	4q23	LOC100507053	rs17028615-?	0.212	1E-10	(AA)	0.0208	NR unit decrease (AA, GCD Discovery)	Illumina [up to 10421983] (imputed)	N
1348	chr4	100071923	100071924	rs17028615	24166409	Gelernter J	2014-01-01	Mol Psychiatry	Genome-wide association study of alcohol dependence:significant findings in African- and European-Americans including novel risk loci.	Alcohol dependence	2,415 African American cases, 1,798 African American controls, 2,669 European ancestry cases, 2,002 European ancestry controls	324 African American cases, 327 African American controls, 2,269 European ancestry cases, 2,975 European ancestry controls	4q23	LOC100507053	rs17028615-A	0.792	6E-8	(AA)	1.3297873	NR (AA, GCD Discovery)	Illumina [up to 10421983] (imputed)	N
1348	chr4	100073260	100073261	rs4699720	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	4q23		rs4699720-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1348	chr4	100082153	100082154	rs1540053	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q23	NR	rs1540053-C	0.2613	1E-16	(VCL)	0.2259	NR unit decrease	Illumina [1671387] (imputed)	N
1348	chr4	100088242	100088243	rs77026667	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q23	NR	rs77026667-G	0.1585	1E-13	(VCL)	0.2432	NR unit decrease	Illumina [1671387] (imputed)	N
1348	chr4	100122915	100122916	rs11733695	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	4q23	NR	rs11733695-G	0.99269	4E-8		0.0811767	[0.051-0.111] unit increase	Affymetrix [16585745] (imputed)	N
1348	chr4	100122915	100122916	rs11733695	30336701	Sanchez-Roige S	2018-10-19	Am J Psychiatry	Genome-Wide Association Study Meta-Analysis of the Alcohol Use Disorders Identification Test (AUDIT) in Two Population-Based Cohorts.	Alcohol use disorder (total score)	141,932 European ancestry individuals	NA	4q23	RP11-696N14.1	rs11733695-A	NR	3E-30		11.42	[NR] z score decrease	NR [16213998]	N
1348	chr4	100122915	100122916	rs11733695	30336701	Sanchez-Roige S	2018-10-19	Am J Psychiatry	Genome-Wide Association Study Meta-Analysis of the Alcohol Use Disorders Identification Test (AUDIT) in Two Population-Based Cohorts.	Alcohol use disorder (dependence and problematic use scores)	121,604 British ancestry individuals	NA	4q23	ADH6	rs11733695-A	NR	8E-13		0.04	[NR] unit decrease	NR [16213998]	N
1348	chr4	100122915	100122916	rs11733695	30336701	Sanchez-Roige S	2018-10-19	Am J Psychiatry	Genome-Wide Association Study Meta-Analysis of the Alcohol Use Disorders Identification Test (AUDIT) in Two Population-Based Cohorts.	Alcohol use disorder (consumption score)	121,604 British ancestry individuals	NA	4q23	ADH6	rs11733695-A	NR	2E-21		0.06	[0.048-0.072] unit decrease	NR [16213998]	N
1348	chr4	100123775	100123776	rs2000864	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q23	NR	rs2000864-C	0.4808	2E-8	(S100A11)	0.1045	NR unit decrease	Illumina [1671387] (imputed)	N
1348	chr4	100129684	100129685	rs3857224	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q23	NR	rs3857224-T	0.3641	2E-16	(SERPINC1)	0.004146	NR unit increase	Illumina [1671387] (imputed)	N
1348	chr4	100129684	100129685	rs3857224	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q23	NR	rs3857224-T	0.3641	1E-17	(S100A11)	0.1534	NR unit increase	Illumina [1671387] (imputed)	N
1348	chr4	100137493	100137494	rs6820368	23534349	Jeff JM	2013-03-28	Ann Hum Genet	Generalization of variants identified by genome-wide association studies for electrocardiographic traits in African Americans.	QRS duration	455 African American individuals	NA	4q23	ADH6	rs6820368-C		6E-6		9.9	[NR] ms increase	Illumina [> 930000]	N
1348	chr4	100138537	100138538	rs9995799	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q23	NR	rs9995799-A	0.2352	3E-10	(S100A11)	0.1257	NR unit increase	Illumina [1671387] (imputed)	N
1348	chr4	100138537	100138538	rs9995799	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q23	NR	rs9995799-A	0.2352	2E-9	(SERPINC1)	0.003361	NR unit increase	Illumina [1671387] (imputed)	N
1349	chr4	100163386	100163386	rs150627184	30940813	Kranzler HR	2019-04-02	Nat Commun	Genome-wide association study of alcohol consumption and use disorder in 274,424 individuals from multiple populations.	Alcohol use disorder (consumption score)	200,680 European American individuals, 56,495 African American individuals, 14,112 Latino American individuals, 1,366 East Asian American individuals, 189 South Asian American individuals	NA	4q23	ADH6	rs150627184-C	0.809	7E-21	(AA)	0.112	[0.089-0.135] unit increase	Affymetrix [up to 12500000] (imputed)	N
1349	chr4	100163872	100163873	rs2201728	23247143	Yu B	2012-12-16	Circ Cardiovasc Genet	Association of genome-wide variation with highly sensitive cardiac troponin-T levels in European Americans and Blacks: a meta-analysis from atherosclerosis risk in communities and cardiovascular health studies.	Cardiac Troponin-T levels	9,491 European ancestry individuals, up to 2,053 African American individuals	NA	4q23	CXCL13	rs2201728-G	NR	5E-6	(Dichotomous variable)	3.13	[1.92-5]	Affymetrix, Illumina [~ 2500000] (imputed)	N
1349	chr4	100167111	100167112	rs62307263	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Alcohol consumption (drinks per week)	414,343 European ancestry individuals	NA	4q23	ADH1A	rs62307263-T	0.1018	3E-11		0.0244556	[0.017-0.032] unit decrease	Affymetrix [11514936] (imputed)	N
1349	chr4	100186222	100186223	rs17583844	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q23	NR	rs17583844-A	0.3171	6E-9	(SERPINC1)	0.003173	NR unit decrease	Illumina [1671387] (imputed)	N
1349	chr4	100201294	100201295	rs28364331	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	4q23		rs28364331-?	NR	8E-17		0.0644114	[0.049-0.08] unit increase	NR [6912294] (imputed)	N
1349	chr4	100201294	100201295	rs28364331	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	417,580 European ancestry individuals	NA	4q23		rs28364331-A	0.981914	2E-20		0.068	[0.054-0.082] unit increase	NR [7250403] (imputed)	N
1349	chr4	100201294	100201295	rs28364331	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	4q23	NR	rs28364331-G	0.018845	1E-17		0.061386	[0.047-0.075] unit increase	Affymetrix [16668957] (imputed)	N
1349	chr4	100201294	100201295	rs28364331	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	4q23	ADH1A	rs28364331-G	0.02	1E-21	(gluconate)	0.811	[0.64-0.98] unit decrease	Illumina [7750367] (imputed)	N
1349	chr4	100212196	100212197	rs4147531	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	4q23	ADH1B	rs4147531-?	NR	5E-6	(isoleucine)	0.15412723	[0.088-0.22] unit increase	Affymetrix [at least 2500000] (imputed)	N
1349	chr4	100214163	100214164	rs904092	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	4q23	NR	rs904092-G	NR	4E-10		0.0194	[0.013-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
1349	chr4	100214163	100214164	rs904092	24166409	Gelernter J	2014-01-01	Mol Psychiatry	Genome-wide association study of alcohol dependence:significant findings in African- and European-Americans including novel risk loci.	Alcohol dependence	4,629 African American individuals, 5,131 European ancestry individuals	801 African American individuals, 1,746 European ancestry individuals	4q23	LOC100507053	rs904092-?	NR	9E-6				Illumina [up to 10421983] (imputed)	N
1349	chr4	100214163	100214164	rs904092	24166409	Gelernter J	2014-01-01	Mol Psychiatry	Genome-wide association study of alcohol dependence:significant findings in African- and European-Americans including novel risk loci.	Alcohol dependence	4,629 African American individuals, 5,131 European ancestry individuals	801 African American individuals, 1,746 European ancestry individuals	4q23	LOC100507053	rs904092-?	0.24	3E-11	(AA)	0.022	NR unit decrease (AA, GCD Discovery)	Illumina [up to 10421983] (imputed)	N
1349	chr4	100214163	100214164	rs904092	24166409	Gelernter J	2014-01-01	Mol Psychiatry	Genome-wide association study of alcohol dependence:significant findings in African- and European-Americans including novel risk loci.	Alcohol dependence	2,415 African American cases, 1,798 African American controls, 2,669 European ancestry cases, 2,002 European ancestry controls	324 African American cases, 327 African American controls, 2,269 European ancestry cases, 2,975 European ancestry controls	4q23	LOC100507053	rs904092-G	0.763	5E-9	(AA)	1.3003901	NR (AA, GCD Discovery)	Illumina [up to 10421983] (imputed)	N
1349	chr4	100223792	100223797	rs543964416	29071344	Zhou H	2017-10-25	JAMA Psychiatry	Genetic Risk Variants Associated With Comorbid Alcohol Dependence and Major Depression.	Major depression and alcohol dependence	3,041 African American individuals, 1,618 European ancestry individuals	1,612 African American individuals, 1,551 European ancestry individuals	4q23	intergenic	rs543964416-AA	0.258	7E-6		0.404	[0.23-0.58] unit decrease	Illumina [at least 5086170] (imputed)	N
1349	chr4	100224069	100224070	rs13132430	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	HDL cholesterol	up to 62,166 European ancestry individuals	NA	4q23	ADH5	rs13132430-A	0.01	1E-8		0.17	[0.11-0.23] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
1349	chr4	100228465	100228466	rs1042026	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q23	NR	rs1042026-C	0.277	4E-11	(S100A11)	0.131	NR unit increase	Illumina [1671387] (imputed)	N
1349	chr4	100228465	100228466	rs1042026	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q23	NR	rs1042026-C	0.277	2E-10	(SERPINC1)	0.003532	NR unit increase	Illumina [1671387] (imputed)	N
1349	chr4	100228465	100228466	rs1042026	22960999	Wu C	2012-09-09	Nat Genet	Genome-wide association analyses of esophageal squamous cell carcinoma in Chinese identify multiple susceptibility loci and gene-environment interactions.	Esophageal cancer  (alcohol interaction)	2,031 Han Chinese ancestry cases, 2,044 Han Chinese ancestry controls	8,092 Chinese ancestry cases, 8,620 Chinese ancestry controls	4q23	ADH1B	rs1042026-?	0.22	3E-7		1.27	[1.16-1.38]	NR [NR]	N
1349	chr4	100229015	100229016	rs75967634	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Problematic alcohol use (MTAG)	972,915 European ancestry individuals	NA	4q23	NR	rs75967634-T	0.003	6E-13		0.14565828	[0.11-0.19] unit decrease	Affymetrix [10613246] (imputed)	N
1349	chr4	100229015	100229016	rs75967634	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol consumption (drinks per week) (MTAG)	972,915 European ancestry individuals	NA	4q23	NR	rs75967634-T	0.00288	2E-11		0.12015295	[0.085-0.155] unit decrease	Affymetrix [NR] (imputed)	N
1349	chr4	100229016	100229017	rs2066702	31151762	Gelernter J	2019-04-08	Biol Psychiatry	Genome-wide Association Study of Maximum Habitual Alcohol Intake in >140,000 U.S. European and African American Veterans Yields Novel Risk Loci.	Maximum habitual alcohol consumption	126,936 European ancestry individuals, 17,029 African American individuals	NA	4q23	ADH1B	rs2066702-A	NR	2E-12	(AA)	0.1996	[0.14-0.26] unit decrease	Affymetrix [up to 6007810] (imputed)	N
1349	chr4	100229016	100229017	rs2066702	30940813	Kranzler HR	2019-04-02	Nat Commun	Genome-wide association study of alcohol consumption and use disorder in 274,424 individuals from multiple populations.	Alcohol use disorder	34,658 European American cases, 167,346 European American controls, 17,267 African American cases, 39,381 African American controls, 3,449 Latino American cases, 10,726 Latino American controls, 164 East Asian American cases, 1,210 East Asian American controls, 46 South Asian American cases, 144 South Asian American controls	NA	4q23	ADH1B	rs2066702-G	0.193	5E-24	(AA)	1.1889193	[1.16-1.22]	Affymetrix [up to 12500000] (imputed)	N
1349	chr4	100229016	100229017	rs2066702	24166409	Gelernter J	2014-01-01	Mol Psychiatry	Genome-wide association study of alcohol dependence:significant findings in African- and European-Americans including novel risk loci.	Alcohol dependence	4,629 African American individuals, 5,131 European ancestry individuals	801 African American individuals, 1,746 European ancestry individuals	4q23	ADH1B	rs2066702-?	NR	2E-13				Illumina [up to 10421983] (imputed)	N
1349	chr4	100229016	100229017	rs2066702	24166409	Gelernter J	2014-01-01	Mol Psychiatry	Genome-wide association study of alcohol dependence:significant findings in African- and European-Americans including novel risk loci.	Alcohol dependence	4,629 African American individuals, 5,131 European ancestry individuals	801 African American individuals, 1,746 European ancestry individuals	4q23	ADH1B	rs2066702-?	0.192	6E-17	(AA)	0.0248	NR unit decrease (AA, GCD Discovery)	Illumina [up to 10421983] (imputed)	N
1349	chr4	100229016	100229017	rs2066702	24166409	Gelernter J	2014-01-01	Mol Psychiatry	Genome-wide association study of alcohol dependence:significant findings in African- and European-Americans including novel risk loci.	Alcohol dependence	2,415 African American cases, 1,798 African American controls, 2,669 European ancestry cases, 2,002 European ancestry controls	324 African American cases, 327 African American controls, 2,269 European ancestry cases, 2,975 European ancestry controls	4q23	ADH1B	rs2066702-G	0.813	4E-11	(AA)	1.3908206	NR (AA, GCD Discovery)	Illumina [up to 10421983] (imputed)	N
1349	chr4	100235052	100235053	rs1789882	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	4q23	NA	rs1789882-A	0.1691	1E-11		0.016	[0.011-0.021] unit increase	NR [~ 27400000] (imputed)	N
1349	chr4	100235052	100235053	rs1789882	24166409	Gelernter J	2014-01-01	Mol Psychiatry	Genome-wide association study of alcohol dependence:significant findings in African- and European-Americans including novel risk loci.	Alcohol dependence	4,629 African American individuals, 5,131 European ancestry individuals	801 African American individuals, 1,746 European ancestry individuals	4q23	ADH1B	rs1789882-?	NR	6E-6				Illumina [up to 10421983] (imputed)	N
1349	chr4	100235052	100235053	rs1789882	24166409	Gelernter J	2014-01-01	Mol Psychiatry	Genome-wide association study of alcohol dependence:significant findings in African- and European-Americans including novel risk loci.	Alcohol dependence	4,629 African American individuals, 5,131 European ancestry individuals	801 African American individuals, 1,746 European ancestry individuals	4q23	ADH1B	rs1789882-?	0.234	2E-12	(AA)	0.0223	NR unit decrease (AA, GCD Discovery)	Illumina [up to 10421983] (imputed)	N
1349	chr4	100235052	100235053	rs1789882	24166409	Gelernter J	2014-01-01	Mol Psychiatry	Genome-wide association study of alcohol dependence:significant findings in African- and European-Americans including novel risk loci.	Alcohol dependence	2,415 African American cases, 1,798 African American controls, 2,669 European ancestry cases, 2,002 European ancestry controls	324 African American cases, 327 African American controls, 2,269 European ancestry cases, 2,975 European ancestry controls	4q23	ADH1B	rs1789882-G	0.769	2E-9	(AA)	1.303781	NR (AA, GCD Discovery)	Illumina [up to 10421983] (imputed)	N
1349	chr4	100236761	100236762	rs1693457	29071344	Zhou H	2017-10-25	JAMA Psychiatry	Genetic Risk Variants Associated With Comorbid Alcohol Dependence and Major Depression.	Major depression and alcohol dependence	3,041 African American individuals, 1,618 European ancestry individuals	1,612 African American individuals, 1,551 European ancestry individuals		intergenic	rs1693457-C	0.206	7E-6	(AA)	0.514	unit decrease	Illumina [at least 5086170] (imputed)	N
1349	chr4	100236761	100236762	rs1693457	24166409	Gelernter J	2014-01-01	Mol Psychiatry	Genome-wide association study of alcohol dependence:significant findings in African- and European-Americans including novel risk loci.	Alcohol dependence	4,629 African American individuals, 5,131 European ancestry individuals	801 African American individuals, 1,746 European ancestry individuals		ADH1B	rs1693457-?	NR	4E-6				Illumina [up to 10421983] (imputed)	N
1349	chr4	100236761	100236762	rs1693457	24166409	Gelernter J	2014-01-01	Mol Psychiatry	Genome-wide association study of alcohol dependence:significant findings in African- and European-Americans including novel risk loci.	Alcohol dependence	4,629 African American individuals, 5,131 European ancestry individuals	801 African American individuals, 1,746 European ancestry individuals		ADH1B	rs1693457-?	0.235	3E-12	(AA)	0.0223	NR unit decrease (AA, GCD Discovery)	Illumina [up to 10421983] (imputed)	N
1349	chr4	100236761	100236762	rs1693457	24166409	Gelernter J	2014-01-01	Mol Psychiatry	Genome-wide association study of alcohol dependence:significant findings in African- and European-Americans including novel risk loci.	Alcohol dependence	2,415 African American cases, 1,798 African American controls, 2,669 European ancestry cases, 2,002 European ancestry controls	324 African American cases, 327 African American controls, 2,269 European ancestry cases, 2,975 European ancestry controls		ADH1B	rs1693457-T	0.768	2E-9	(AA)	1.3020833	NR (AA, GCD Discovery)	Illumina [up to 10421983] (imputed)	N
1349	chr4	100238997	100238998	rs2075633	31591379	Sun Y	2019-10-07	Transl Psychiatry	Genome-wide association study of alcohol dependence in male Han Chinese and cross-ethnic polygenic risk score comparison.	Alcohol dependence	533 Han Chinese ancestry cases, 2,848 Han Chinese ancestry controls	146 Han Chinese ancestry cases, 200 Han Chinese ancestry controls	4q23	ADH1B	rs2075633-?	NR	5E-21		2.52	[2.38-2.66]	Illumina [6449738] (imputed)	N
1349	chr4	100239318	100239319	rs1229984	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of saturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	4q23		rs1229984-T	0.0274594	4E-32		0.145346	[0.12-0.17] unit decrease	NR [11722792] (imputed)	N
1349	chr4	100239318	100239319	rs1229984	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	4q23		rs1229984-T	0.0274543	8E-13		0.0893003	[0.065-0.114] unit decrease	NR [11722792] (imputed)	N
1349	chr4	100239318	100239319	rs1229984	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	4q23		rs1229984-T	0.0274543	3E-9		0.0746017	[0.05-0.099] unit increase	NR [11722792] (imputed)	N
1349	chr4	100239318	100239319	rs1229984	34642315	Ferreiro-Iglesias A	2021-10-12	Nat Commun	Germline determinants of humoral immune response to HPV-16 protect against oropharyngeal cancer.	Oropharynx cancer and human papilloma virus 16 negative oropharyngeal cancer	2,359 European ancestry cases, 565 European ancestry controls	NA	4q23		rs1229984-G	NR	4E-8		0.5916		Illumina [up to 7574753] (imputed)	N
1349	chr4	100239318	100239319	rs1229984	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	4q23		rs1229984-C	NR	5E-10		0.0185	[0.013-0.024] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1349	chr4	100239318	100239319	rs1229984	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	4q23		rs1229984-C	NR	1E-9		0.0225	[0.015-0.03] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
1349	chr4	100239318	100239319	rs1229984	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Esophageal cancer	998 European ancestry cases, 475,308 European ancestry controls, 1,388 East Asian ancestry cases, 159,201 East Asian ancestry controls	NA	4q23		rs1229984-C	NR	3E-45		0.6715	[0.58-0.76] unit increase	Affymetrix, Illumina [25843129] (imputed)	N
1349	chr4	100239318	100239319	rs1229984	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Esophageal cancer	1,388 East Asian ancestry cases, 159,201 East Asian ancestry controls	NA	4q23		rs1229984-C	0.244615766	2E-46		0.71232766	[0.61-0.81] unit increase	Illumina [13427188] (imputed)	N
1349	chr4	100239318	100239319	rs1229984	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	4q23		rs1229984-C	NR	5E-17		0.0292	[0.022-0.036] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1349	chr4	100239318	100239319	rs1229984	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	4q23		rs1229984-C	NR	3E-16		0.0296	[0.023-0.037] unit decrease	Affymetrix, Illumina [20538307] (imputed)	N
1349	chr4	100239318	100239319	rs1229984	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	4q23	ADH1B	rs1229984-T	0.0264666	2E-14		0.012214	[0.009-0.0154] unit decrease	Affymetrix [13995440] (imputed)	N
1349	chr4	100239318	100239319	rs1229984	33861876	Dao C	2021-04-16	Addiction	The Impact of Removing Former Drinkers from Genome-wide Association Studies of AUDIT-C.	Alcohol use disorder (consumption score)	5,135 European ancestry individuals inluding former drinkers, 126,375 European ancestry individuals excluding former drinkers	NR	4q23	ADH1B	rs1229984-?	NR	2E-65		0.592	[0.52-0.66] unit decrease	NR [7682250] (imputed)	N
1349	chr4	100239318	100239319	rs1229984	33832965	Sandoval-Plata G	2021-04-08	Ann Rheum Dis	Variants in urate transporters, ADH1B, GCKR and MEPE genes associate with transition from asymptomatic hyperuricaemia to gout: results of the first gout versus asymptomatic hyperuricaemia GWAS in Caucasians using data from the UK Biobank.	Gout vs asymptomatic hyperuricemia	4,934 European ancestry cases, 56,948 European ancestry controls	2,115 European ancestry cases, 24,406 European ancestry controls	4q23	ADH1B	rs1229984-T	0.03	1E-15		1.49	[1.35-1.64]	Affymetrix [710030]	N
1349	chr4	100239318	100239319	rs1229984	33832965	Sandoval-Plata G	2021-04-08	Ann Rheum Dis	Variants in urate transporters, ADH1B, GCKR and MEPE genes associate with transition from asymptomatic hyperuricaemia to gout: results of the first gout versus asymptomatic hyperuricaemia GWAS in Caucasians using data from the UK Biobank.	Gout	7,049 European ancestry cases, 64,424 European ancestry controls	NA	4q23	ADH1B	rs1229984-T	0.02	5E-23		1.75	[1.57-1.95]	Affymetrix [710030]	N
1349	chr4	100239318	100239319	rs1229984	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	4q23	NR	rs1229984-T	0.05	2E-9		0.8	[0.72-0.88]	Illumina [8468885] (imputed)	N
1349	chr4	100239318	100239319	rs1229984	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	4q23	NR	rs1229984-C	NR	4E-9		0.0469	[0.031-0.063] unit decrease	Affymetrix [9000000] (imputed)	N
1349	chr4	100239318	100239319	rs1229984	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urinary sodium excretion	332,397 European ancestry individuals, 5,781 African ancestry individuals, 6,993 South Asian ancestry individuals	NA	4q23	NR	rs1229984-C	NR	1E-9		0.0482	[0.033-0.064] unit decrease	Affymetrix [9000000] (imputed)	N
1349	chr4	100239318	100239319	rs1229984	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	4q23	NR	rs1229984-C	NR	2E-23		0.0775	[0.062-0.093] unit decrease	Affymetrix [9000000] (imputed)	N
1349	chr4	100239318	100239319	rs1229984	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	4q23	NR	rs1229984-C	NR	5E-19		0.0694	[0.054-0.085] unit decrease	Affymetrix [9000000] (imputed)	N
1349	chr4	100239318	100239319	rs1229984	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	4q23	NR	rs1229984-C	NR	1E-16		0.0645	[0.049-0.08] unit increase	Affymetrix [9000000] (imputed)	N
1349	chr4	100239318	100239319	rs1229984	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	4q23	NR	rs1229984-C	NR	1E-17		0.0697	[0.054-0.086] unit increase	Affymetrix [9000000] (imputed)	N
1349	chr4	100239318	100239319	rs1229984	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	4q23	NR	rs1229984-C	NR	1E-24		0.0797	[0.064-0.095] unit increase	Affymetrix [9000000] (imputed)	N
1349	chr4	100239318	100239319	rs1229984	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	4q23	NR	rs1229984-C	NR	6E-12		0.0559	[0.04-0.072] unit increase	Affymetrix [9000000] (imputed)	N
1349	chr4	100239318	100239319	rs1229984	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	4q23	NR	rs1229984-C	NR	3E-23		0.0774	[0.062-0.093] unit increase	Affymetrix [9000000] (imputed)	N
1349	chr4	100239318	100239319	rs1229984	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	4q23	NR	rs1229984-C	NR	3E-32		0.0921	[0.077-0.107] unit decrease	Affymetrix [9000000] (imputed)	N
1349	chr4	100239318	100239319	rs1229984	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	4q23	NR	rs1229984-C	NR	3E-13		0.0567	[0.041-0.072] unit increase	Affymetrix [9000000] (imputed)	N
1349	chr4	100239318	100239319	rs1229984	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	4q23		rs1229984-T	0.0255	6E-16		0.88558203	[0.67-1.1] mmHg decrease	Affymetrix, Illumina [242865] (imputed)	N
1349	chr4	100239318	100239319	rs1229984	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	4q23		rs1229984-T	0.0254	3E-25		0.7580625	[0.61-0.9] mmHg decrease	Affymetrix, Illumina [242866] (imputed)	N
1349	chr4	100239318	100239319	rs1229984	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	4q23	ADH1B	rs1229984-C	0.9748243	4E-9		0.042106487	[0.028-0.056] unit decrease	Affymetrix [93095623] (imputed)	N
1349	chr4	100239318	100239319	rs1229984	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	4q23	ADH1B	rs1229984-C	0.9748287	1E-10		0.046019696	[0.032-0.06] unit decrease	Affymetrix [93095623] (imputed)	N
1349	chr4	100239318	100239319	rs1229984	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	4q23	ADH1B	rs1229984-C	0.9747934	2E-10		0.04492588	[0.031-0.059] unit decrease	Affymetrix [93095623] (imputed)	N
1349	chr4	100239318	100239319	rs1229984	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	4q23	ADH1B	rs1229984-C	0.9747907	6E-12		0.048780907	[0.035-0.063] unit decrease	Affymetrix [93095623] (imputed)	N
1349	chr4	100239318	100239319	rs1229984	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Esophageal cancer	1,300 Japanese ancestry cases, 195,745 Japanese ancestry controls	NA	4q23		rs1229984-C	0.261191323	3E-44		2.0655997	[1.865488484-2.287176659]	Illumina [8919992] (imputed)	N
1349	chr4	100239318	100239319	rs1229984	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Problematic alcohol use (MTAG)	972,915 European ancestry individuals	NA	4q23	NR	rs1229984-C	0.9698	6E-267		0.24346012	[0.23-0.26] unit increase	Affymetrix [10613246] (imputed)	N
1349	chr4	100239318	100239319	rs1229984	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Problematic alcohol use	435,563 European ancestry individuals	NA	4q23	ADH1B	rs1229984-T	0.0302	3E-107		22.0	[NR] z score decrease	Affymetrix [14069427] (imputed)	N
1349	chr4	100239318	100239319	rs1229984	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol use disorder	57,564 European ancestry cases, 256,395 European ancestry controls	NA	4q23	NR	rs1229984-T	0.0302	3E-107		22.0	[NR] unit decrease	Affymetrix [7003540] (imputed)	N
1349	chr4	100239318	100239319	rs1229984	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol consumption (drinks per week) (MTAG)	972,915 European ancestry individuals	NA	4q23	NR	rs1229984-C	0.953	7E-280		0.15401822	[0.15-0.16] unit increase	Affymetrix [NR] (imputed)	N
1349	chr4	100239318	100239319	rs1229984	32393786	Meddens SFW	2020-05-11	Mol Psychiatry	Genomic analysis of diet composition finds novel loci and associations with health and lifestyle.	Relative protein intake	175,253 European ancestry individuals	93,179 European ancestry individuals	4q23	ADH1B	rs1229984-?		9E-7		0.044	[0.026-0.062] unit increase	Affymetrix [NR]	N
1349	chr4	100239318	100239319	rs1229984	32393786	Meddens SFW	2020-05-11	Mol Psychiatry	Genomic analysis of diet composition finds novel loci and associations with health and lifestyle.	Relative fat intake	175,253 European ancestry individuals	93,179 European ancestry individuals	4q23	ADH1B	rs1229984-?		1E-28		0.098	[0.08-0.116] unit increase	Affymetrix [NR]	N
1349	chr4	100239318	100239319	rs1229984	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		4q23	ADH1B	rs1229984-T	0.0271609	3E-8		0.02304	[0.015-0.031] unit decrease	Affymetrix [12370749]	N
1349	chr4	100239318	100239319	rs1229984	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	417,580 European ancestry individuals	NA	4q23		rs1229984-T	0.0248886	5E-10		0.039	[0.027-0.051] unit increase	NR [7250403] (imputed)	N
1349	chr4	100239318	100239319	rs1229984	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	4q23	ADH1B	rs1229984-T	0.0272003	7E-17		0.0528485	[0.04-0.065] unit decrease	Affymetrix [NR] (imputed)	N
1349	chr4	100239318	100239319	rs1229984	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	4q23	ADH1B	rs1229984-T	0.0271895	8E-10		0.0388703	[0.026-0.051] unit decrease	Affymetrix [NR] (imputed)	N
1349	chr4	100239318	100239319	rs1229984	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	4q23	ADH1B	rs1229984-?	NR	1E-20		0.0804	[0.065-0.095] unit decrease	Affymetrix [5701386] (imputed)	N
1349	chr4	100239318	100239319	rs1229984	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	4q23	NR	rs1229984-C	0.973099	5E-13		0.046854	[0.034-0.06] unit decrease	Affymetrix [16668957] (imputed)	N
1349	chr4	100239318	100239319	rs1229984	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	4q23	NR	rs1229984-C	0.9763163	1E-8		0.0489634	[0.031-0.067] unit increase	Affymetrix [16580851] (imputed)	N
1349	chr4	100239318	100239319	rs1229984	31998841	Thompson A	2020-01-15	Sci Adv	Functional validity, role, and implications of heavy alcohol consumption genetic loci.	Alcohol consumption (heavy vs. light/non-drinkers)	21,967 British ancestry cases, 103,282 British ancestry controls	47,967 European ancestry individuals	4q23	ADH1B	rs1229984-C	0.98	2E-66		17.209	NR z score increase	Affymetrix [11141077] (imputed)	N
1349	chr4	100239318	100239319	rs1229984	31959922	Matoba N	2020-01-20	Nat Hum Behav	GWAS of 165,084 Japanese individuals identified nine loci associated with dietary habits.	Alcohol consumption (drinks per week)	58,610 Japanese ancestry individuals	NA	4q23	ADH1B	rs1229984-?	NR	4E-19		0.07	[0.055-0.085] unit increase	Illumina [6108828] (imputed)	N
1349	chr4	100239318	100239319	rs1229984	31959922	Matoba N	2020-01-20	Nat Hum Behav	GWAS of 165,084 Japanese individuals identified nine loci associated with dietary habits.	Alcohol consumption (drinkers vs non-drinkers)	83,713 Japanese ancestry ever drinkers, 81,371 Japanese ancestry never drinkers	NA	4q23	ADH1B	rs1229984-?	NR	2E-72		0.038	[0.034-0.042] unit increase	Illumina [6108828] (imputed)	N
1349	chr4	100239318	100239319	rs1229984	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	4q23	NR	rs1229984-T	0.02239	3E-9		0.049819224	[0.033-0.066] unit decrease	Affymetrix [10549349] (imputed)	N
1349	chr4	100239318	100239319	rs1229984	31409800	Pazoki R	2019-08-13	Nat Commun	GWAS for urinary sodium and potassium excretion highlights pathways shared with cardiovascular traits.	Urinary sodium excretion	446,237 European ancestry individuals	7,612 African ancestry individuals, 10,095 South Asian ancestry individuals	4q23	ADH1B	rs1229984-T	0.0265565	2E-10	(EA)	0.0241902	[0.017-0.032] unit increase	Affymetrix [~ 8800000] (imputed)	N
1349	chr4	100239318	100239319	rs1229984	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	4q23	ADH1B	rs1229984-T	0.571	1E-8		0.0079	[0.0052-0.0106] unit increase	Affymetrix, Illumina [8176554] (imputed)	N
1349	chr4	100239318	100239319	rs1229984	31151762	Gelernter J	2019-04-08	Biol Psychiatry	Genome-wide Association Study of Maximum Habitual Alcohol Intake in >140,000 U.S. European and African American Veterans Yields Novel Risk Loci.	Maximum habitual alcohol consumption	126,936 European ancestry individuals, 17,029 African American individuals	NA	4q23	ADH1B	rs1229984-C	NR	5E-47	(EA)	0.3553	NR unit decrease	Affymetrix [up to 6007810] (imputed)	N
1349	chr4	100239318	100239319	rs1229984	31151762	Gelernter J	2019-04-08	Biol Psychiatry	Genome-wide Association Study of Maximum Habitual Alcohol Intake in >140,000 U.S. European and African American Veterans Yields Novel Risk Loci.	Maximum habitual alcohol consumption	126,936 European ancestry individuals, 17,029 African American individuals	NA	4q23	ADH1B	rs1229984-?	NR	1E-49		14.821	NR z score decrease	Affymetrix [up to 6007810] (imputed)	N
1349	chr4	100239318	100239319	rs1229984	31090166	Lai D	2019-05-14	Genes Brain Behav	Genome-wide association studies of alcohol dependence, DSM-IV criterion count, and individual criteria.	Alcohol dependence symptom count	7,418 European ancestry individuals, 3,175 African American individuals	5,053 European ancestry individuals, 2,940 African American individuals	4q23	ADH1B	rs1229984-?	NR	4E-10				Illumina [up to 8021023] (imputed)	N
1349	chr4	100239318	100239319	rs1229984	31090166	Lai D	2019-05-14	Genes Brain Behav	Genome-wide association studies of alcohol dependence, DSM-IV criterion count, and individual criteria.	Alcohol dependence (tolerance)	3,348 European ancestry cases, 1,110 African American cases, 3,958 European ancestry controls, 2,024 African American controls	3,051 European ancestry cases, 1,545 African American cases, 2,001 European ancestry controls, 1,395 African American controls	4q23	ADH1B	rs1229984-?	NR	1E-9				Illumina [up to 8021023] (imputed)	N
1349	chr4	100239318	100239319	rs1229984	31090166	Lai D	2019-05-14	Genes Brain Behav	Genome-wide association studies of alcohol dependence, DSM-IV criterion count, and individual criteria.	Alcohol dependence (desire to cut drinking)	2,896 European ancestry cases, 1,436 African American cases, 4,413 European ancestry controls, 1,701 African American controls	2,021 European ancestry cases, 1,836 African American cases, 3,032 European ancestry controls, 1,104 African American controls	4q23	ADH1B	rs1229984-?	NR	1E-17				Illumina [up to 8021023] (imputed)	N
1349	chr4	100239318	100239319	rs1229984	31090166	Lai D	2019-05-14	Genes Brain Behav	Genome-wide association studies of alcohol dependence, DSM-IV criterion count, and individual criteria.	Alcohol dependence	2,411 European ancestry cases, 880 African American cases, 2,438 European ancestry controls, 951 African American controls	2,280 European ancestry cases, 1,911 African American cases, 1,964 European ancestry controls, 815 African American controls	4q23	ADH1B	rs1229984-?	NR	5E-9				Illumina [up to 8021023] (imputed)	N
1349	chr4	100239318	100239319	rs1229984	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter alcoholic beverage consumption	336,448 European ancestry individuals	39,924 European ancestry individuals	4q23	ADH1B	rs1229984-C	0.9725	2E-140		0.0821	[0.076-0.089] unit increase	Affymetrix [~ 7740000] (imputed)	N
1349	chr4	100239318	100239319	rs1229984	30940813	Kranzler HR	2019-04-02	Nat Commun	Genome-wide association study of alcohol consumption and use disorder in 274,424 individuals from multiple populations.	Alcohol use disorder (consumption score)	200,680 European American individuals, 56,495 African American individuals, 14,112 Latino American individuals, 1,366 East Asian American individuals, 189 South Asian American individuals	NA	4q23	ADH1B	rs1229984-C	0.989	1E-19	(AA)	0.412	[0.32-0.5] unit increase	Affymetrix [up to 12500000] (imputed)	N
1349	chr4	100239318	100239319	rs1229984	30940813	Kranzler HR	2019-04-02	Nat Commun	Genome-wide association study of alcohol consumption and use disorder in 274,424 individuals from multiple populations.	Alcohol use disorder (consumption score)	200,680 European American individuals, 56,495 African American individuals, 14,112 Latino American individuals, 1,366 East Asian American individuals, 189 South Asian American individuals	NA	4q23	ADH1B	rs1229984-C	0.97	5E-102	(EA)	0.3402	[0.31-0.37] unit increase	Affymetrix [up to 12500000] (imputed)	N
1349	chr4	100239318	100239319	rs1229984	30940813	Kranzler HR	2019-04-02	Nat Commun	Genome-wide association study of alcohol consumption and use disorder in 274,424 individuals from multiple populations.	Alcohol use disorder (consumption score)	200,680 European American individuals, 56,495 African American individuals, 14,112 Latino American individuals, 1,366 East Asian American individuals, 189 South Asian American individuals	NA	4q23	ADH1B	rs1229984-C	0.97	4E-133		24.56	NR z score increase	Affymetrix [up to 12500000] (imputed)	N
1349	chr4	100239318	100239319	rs1229984	30940813	Kranzler HR	2019-04-02	Nat Commun	Genome-wide association study of alcohol consumption and use disorder in 274,424 individuals from multiple populations.	Alcohol use disorder (consumption score)	200,680 European American individuals, 56,495 African American individuals, 14,112 Latino American individuals, 1,366 East Asian American individuals, 189 South Asian American individuals	NA	4q23	ADH1B	rs1229984-C	0.938	4E-16	(Latino)	0.349	[0.26-0.43] unit increase	Affymetrix [up to 12500000] (imputed)	N
1349	chr4	100239318	100239319	rs1229984	30940813	Kranzler HR	2019-04-02	Nat Commun	Genome-wide association study of alcohol consumption and use disorder in 274,424 individuals from multiple populations.	Alcohol use disorder	34,658 European American cases, 167,346 European American controls, 17,267 African American cases, 39,381 African American controls, 3,449 Latino American cases, 10,726 Latino American controls, 164 East Asian American cases, 1,210 East Asian American controls, 46 South Asian American cases, 144 South Asian American controls	NA	4q23	ADH1B	rs1229984-C	0.97	5E-74	(EA)	1.742	[1.68-1.8]	Affymetrix [up to 12500000] (imputed)	N
1349	chr4	100239318	100239319	rs1229984	30940813	Kranzler HR	2019-04-02	Nat Commun	Genome-wide association study of alcohol consumption and use disorder in 274,424 individuals from multiple populations.	Alcohol use disorder	34,658 European American cases, 167,346 European American controls, 17,267 African American cases, 39,381 African American controls, 3,449 Latino American cases, 10,726 Latino American controls, 164 East Asian American cases, 1,210 East Asian American controls, 46 South Asian American cases, 144 South Asian American controls	NA	4q23	ADH1B	rs1229984-C	0.969	5E-85		19.54	NR z score increase	Affymetrix [up to 12500000] (imputed)	N
1349	chr4	100239318	100239319	rs1229984	30940813	Kranzler HR	2019-04-02	Nat Commun	Genome-wide association study of alcohol consumption and use disorder in 274,424 individuals from multiple populations.	Alcohol use disorder	34,658 European American cases, 167,346 European American controls, 17,267 African American cases, 39,381 African American controls, 3,449 Latino American cases, 10,726 Latino American controls, 164 East Asian American cases, 1,210 East Asian American controls, 46 South Asian American cases, 144 South Asian American controls	NA	4q23	ADH1B	rs1229984-C	0.938	6E-17	(Latino)	1.7746	[1.64-1.91]	Affymetrix [up to 12500000] (imputed)	N
1349	chr4	100239318	100239319	rs1229984	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Alcohol consumption (drinks per week)	up to 357,854 European ancestry individuals	NA	4q23	ADH1B	rs1229984-C	0.98	2E-173		0.246	[0.23-0.26] unit increase	Illumina [~ 250000] (imputed)	N
1349	chr4	100239318	100239319	rs1229984	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	4q23	ADH1B	rs1229984-T	0.023	4E-22		0.083182804	[0.066-0.1] unit decrease	Affymetrix [~ 11515000] (imputed)	N
1349	chr4	100239318	100239319	rs1229984	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Alcohol consumption (drinks per week)	414,343 European ancestry individuals	NA	4q23	ADH1B	rs1229984-T	0.0228	8E-202		0.2266165	[0.21-0.24] unit decrease	Affymetrix [11514936] (imputed)	N
1349	chr4	100239318	100239319	rs1229984	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week)	up to 941,280 European ancestry individuals	NA	4q23	NR	rs1229984-C	0.963	2E-308		0.15053357	[0.14-0.16] unit increase	NR [~ 10000000] (imputed)	N
1349	chr4	100239318	100239319	rs1229984	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	4q23	ADH1B	rs1229984-T	0.02372	6E-9		0.0360185	[0.024-0.048] unit increase	NR [13737936] (imputed)	N
1349	chr4	100239318	100239319	rs1229984	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	4q23		rs1229984-?	NR	6E-13				NR [~ 8900000] (imputed)	N
1349	chr4	100239318	100239319	rs1229984	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	4q23		rs1229984-?	NR	7E-12				NR [~ 8900000] (imputed)	N
1349	chr4	100239318	100239319	rs1229984	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	4q23		rs1229984-?	NR	2E-18				NR [~ 8900000] (imputed)	N
1349	chr4	100239318	100239319	rs1229984	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	4q23		rs1229984-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1349	chr4	100239318	100239319	rs1229984	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	4q23		rs1229984-?	NR	8E-15				NR [~ 8900000] (imputed)	N
1349	chr4	100239318	100239319	rs1229984	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	4q23		rs1229984-?	NR	1E-12				NR [~ 8900000] (imputed)	N
1349	chr4	100239318	100239319	rs1229984	30336701	Sanchez-Roige S	2018-10-19	Am J Psychiatry	Genome-Wide Association Study Meta-Analysis of the Alcohol Use Disorders Identification Test (AUDIT) in Two Population-Based Cohorts.	Alcohol use disorder (dependence and problematic use scores)	121,604 British ancestry individuals	NA	4q23	ADH1B	rs1229984-C	NR	1E-45		0.04	[NR] unit increase	NR [16213998]	N
1349	chr4	100239318	100239319	rs1229984	30336701	Sanchez-Roige S	2018-10-19	Am J Psychiatry	Genome-Wide Association Study Meta-Analysis of the Alcohol Use Disorders Identification Test (AUDIT) in Two Population-Based Cohorts.	Alcohol use disorder (consumption score)	121,604 British ancestry individuals	NA	4q23	ADH1B	rs1229984-C	NR	4E-56		0.05	[0.044-0.056] unit increase	NR [16213998]	N
1349	chr4	100239318	100239319	rs1229984	29970889	Day FR	2018-07-03	Nat Commun	Elucidating the genetic basis of social interaction and isolation.	Regular attendance at a pub or social club	124,047 European ancestry cases, 328,255 European ancestry controls	NA	4q23	METAP1, ADH5, LOC100507053, ADH4, PCNAP1, ADH6, ADH1A, ADH1B, ADH1C, ADH7, C4orf17, RG9MTD2, MTTP	rs1229984-T	0.0236479	4E-25		0.0312757	[0.025-0.037] unit decrease	NR [NR] (imputed)	N
1349	chr4	100239318	100239319	rs1229984	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	4q23	NR	rs1229984-C	0.27	1E-7	(Japanese, Male)	0.034	[0.022-0.046] unit increase	Illumina [6108953] (imputed)	N
1349	chr4	100239318	100239319	rs1229984	28485404	Jorgenson E	2017-05-09	Mol Psychiatry	Genetic contributors to variation in alcohol consumption vary by race/ethnicity in a large multi-ethnic genome-wide association study.	Alcohol consumption (drinks per week)	23,104 European ancestry non-drinker individuals, 47,967 European ancestry drinker individuals, 2,673 Hispanic/Latino non-drinker individuals, 4,374 Hispanic/Latino drinker individuals, 3,288 East Asian ancestry non-drinker individuals, 2,746 East Asian ancestry drinker individuals, 1,165 African American non-drinkers individuals, 1,310 African American drinker individuals.	NA	4q23	ADH1B	rs1229984-T	0.05	3E-6	(Hispanic/Latino, adjusted for lean body mass)	0.21	[0.30-0.12] drinks per week decrease	Affymetrix [NR] (imputed)	N
1349	chr4	100239318	100239319	rs1229984	28485404	Jorgenson E	2017-05-09	Mol Psychiatry	Genetic contributors to variation in alcohol consumption vary by race/ethnicity in a large multi-ethnic genome-wide association study.	Alcohol consumption (drinks per week)	23,104 European ancestry non-drinker individuals, 47,967 European ancestry drinker individuals, 2,673 Hispanic/Latino non-drinker individuals, 4,374 Hispanic/Latino drinker individuals, 3,288 East Asian ancestry non-drinker individuals, 2,746 East Asian ancestry drinker individuals, 1,165 African American non-drinkers individuals, 1,310 African American drinker individuals.	NA	4q23	ADH1B	rs1229984-T	0.05	3E-32	(EA)	0.19	[0.22-0.16] drinks per week decrease	Affymetrix [NR] (imputed)	N
1349	chr4	100239318	100239319	rs1229984	28485404	Jorgenson E	2017-05-09	Mol Psychiatry	Genetic contributors to variation in alcohol consumption vary by race/ethnicity in a large multi-ethnic genome-wide association study.	Alcohol consumption (drinkers vs non-drinkers)	23,104 European ancestry non-drinker individuals, 47,967 European ancestry drinker individuals, 2,673 Hispanic/Latino non-drinker individuals, 4,374 Hispanic/Latino drinker individuals, 3,288 East Asian ancestry non-drinker individuals, 2,746 East Asian ancestry drinker individuals, 1,165 African American non-drinkers individuals, 1,310 African American drinker individuals.	NA	4q23	ADH1B	rs1229984-?	0.95	2E-20	(EA)	1.27	[1.19-1.35]	Affymetrix [NR] (imputed)	N
1349	chr4	100239318	100239319	rs1229984	28485404	Jorgenson E	2017-05-09	Mol Psychiatry	Genetic contributors to variation in alcohol consumption vary by race/ethnicity in a large multi-ethnic genome-wide association study.	Alcohol consumption (drinkers vs non-drinkers)	23,104 European ancestry non-drinker individuals, 47,967 European ancestry drinker individuals, 2,673 Hispanic/Latino non-drinker individuals, 4,374 Hispanic/Latino drinker individuals, 3,288 East Asian ancestry non-drinker individuals, 2,746 East Asian ancestry drinker individuals, 1,165 African American non-drinkers individuals, 1,310 African American drinker individuals.	NA	4q23	ADH1B	rs1229984-?	0.93	4E-7	(Hispanic/Latino)	1.39	[1.18-1.69]	Affymetrix [NR] (imputed)	N
1349	chr4	100239318	100239319	rs1229984	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Pulse pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	4q23	chr4mb100	rs1229984-C	0.9744467	5E-7		0.465	[0.28-0.65] unit increase	Affymetrix [~ 9800000] (imputed)	N
1349	chr4	100239318	100239319	rs1229984	27749845	Lesseur C	2016-10-17	Nat Genet	Genome-wide association analyses identify new susceptibility loci for oral cavity and pharyngeal cancer.	Oropharynx cancer	2,506 European ancestry cases, 135 cases, 5,984 European ancestry controls, 601 controls	NA	4q23	ADH1B	rs1229984-G	0.9401455463215125	9E-9		1.832173		Illumina [7574753] (imputed)	N
1349	chr4	100239318	100239319	rs1229984	27749845	Lesseur C	2016-10-17	Nat Genet	Genome-wide association analyses identify new susceptibility loci for oral cavity and pharyngeal cancer.	Oral cavity cancer	2,717 European ancestry cases, 273 cases, 5,984 European ancestry controls, 601 controls	NA	4q23	ADH1B	rs1229984-G	0.94	1E-9		1.7436792	NR	Illumina [7574753] (imputed)	N
1349	chr4	100239318	100239319	rs1229984	27749845	Lesseur C	2016-10-17	Nat Genet	Genome-wide association analyses identify new susceptibility loci for oral cavity and pharyngeal cancer.	Oral cavity and pharyngeal cancer	2,717 European ancestry oral cavity cancer cases, 273 oral cavity cancer cases, 2,506 European ancestry oropharynx cancer cases, 135 oropharynx cancer cases, 305 European and unknown ancestry hypopharynx cancer cases, 73 European and unknown ancestry overlapping cases, 25 European and unknown ancestry cases, 5,984 European ancestry controls, 601 controls	NA	4q23	ADH1B, ADH1C, METAP1, LOC100507053	rs1229984-G	0.94	2E-15		1.7898692		Illumina [7574753] (imputed)	N
1349	chr4	100239318	100239319	rs1229984	24166409	Gelernter J	2014-01-01	Mol Psychiatry	Genome-wide association study of alcohol dependence:significant findings in African- and European-Americans including novel risk loci.	Alcohol dependence	4,629 African American individuals, 5,131 European ancestry individuals	801 African American individuals, 1,746 European ancestry individuals	4q23	ADH1B	rs1229984-T	0.071	2E-23	(EA)	0.0164	NR unit decrease (EA, SAGE Discovery)	Illumina [up to 10421983] (imputed)	N
1349	chr4	100239318	100239319	rs1229984	24166409	Gelernter J	2014-01-01	Mol Psychiatry	Genome-wide association study of alcohol dependence:significant findings in African- and European-Americans including novel risk loci.	Alcohol dependence	4,629 African American individuals, 5,131 European ancestry individuals	801 African American individuals, 1,746 European ancestry individuals	4q23	ADH1B	rs1229984-?	NR	2E-22				Illumina [up to 10421983] (imputed)	N
1349	chr4	100239318	100239319	rs1229984	24166409	Gelernter J	2014-01-01	Mol Psychiatry	Genome-wide association study of alcohol dependence:significant findings in African- and European-Americans including novel risk loci.	Alcohol dependence	2,415 African American cases, 1,798 African American controls, 2,669 European ancestry cases, 2,002 European ancestry controls	324 African American cases, 327 African American controls, 2,269 European ancestry cases, 2,975 European ancestry controls	4q23	ADH1B	rs1229984-C	0.971	1E-31	(EA)	6.5789475	NR (EA, German Sample)	Illumina [up to 10421983] (imputed)	N
1349	chr4	100239318	100239319	rs1229984	23743675	Kapoor M	2013-06-07	Hum Genet	A meta-analysis of two genome-wide association studies to identify novel loci for maximum number of alcoholic drinks.	Alcohol consumption	2,322 European ancestry individuals from 118 families, 2,593 European ancestry individuals		4q23	ADH1B	rs1229984-?	0.03	2E-8				Illumina [4058415] (imputed)	N
1349	chr4	100239318	100239319	rs1229984	23456092	Park BL	2013-03-01	Hum Genet	Extended genetic effects of ADH cluster genes on the risk of alcohol dependence: from GWAS to replication.	Alcohol dependence	117 Korean ancestry cases, 279 Korean ancestry controls	504 Korean ancestry cases, 471 Korean ancestry controls	4q23	ADH4, ADH1C, ADH6, ADH1A, ADH7, ADH1B, ADH5	rs1229984-?	NR	3E-21		2.35	[1.95-2.84]	Illumina [427349]	N
1349	chr4	100239318	100239319	rs1229984	21437268	McKay JD	2011-03-17	PLoS Genet	A genome-wide association study of upper aerodigestive tract cancers conducted within the INHANCE consortium.	Oral cavity and pharyngeal cancer	2,091 European ancestry cases, 8,334 European ancestry controls	6,574 European ancestry cases, 7,892 European ancestry controls	4q23	ADH1B	rs1229984-T	0.94	1E-20		1.56	[1.41-1.69]	Illumina [294620]	N
1349	chr4	100239318	100239319	rs1229984	19698717	Cui R	2009-08-18	Gastroenterology	Functional variants in ADH1B and ALDH2 coupled with alcohol and smoking synergistically enhance esophageal cancer risk.	Esophageal cancer	182 Japanese ancestry cases, 927 Japanese ancestry controls	782 Japanese ancestry cases, 1,898 Japanese ancestry controls	4q23	ADH6, ADH1B	rs1229984-G	NR	8E-24		1.79	[1.69-1.88]	Illumina [359195]	N
1349	chr4	100244318	100244319	rs3811801	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	163,835 East Asian ancestry individuals	NA	4q23		rs3811801-A	0.724613	3E-11		0.024907	[0.018-0.032] unit decrease	Illumina [13479178] (imputed)	N
1349	chr4	100246936	100246937	rs9307239	24166409	Gelernter J	2014-01-01	Mol Psychiatry	Genome-wide association study of alcohol dependence:significant findings in African- and European-Americans including novel risk loci.	Alcohol dependence	4,629 African American individuals, 5,131 European ancestry individuals	801 African American individuals, 1,746 European ancestry individuals	4q23	intergenic	rs9307239-?	0.549	1E-7	(AA)	0.0254	NR unit decrease (AA, GCD Discovery)	Illumina [up to 10421983] (imputed)	N
1349	chr4	100247350	100247351	rs2213041	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q23	NR	rs2213041-A	0.1446	7E-14	(S100A11)	0.1837	NR unit decrease	Illumina [1671387] (imputed)	N
1349	chr4	100247350	100247351	rs2213041	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q23	NR	rs2213041-A	0.1446	4E-12	(SERPINC1)	0.004773	NR unit decrease	Illumina [1671387] (imputed)	N
1349	chr4	100248641	100248642	rs145452708	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	4q23		rs145452708-C	NR	6E-11		0.0706	[0.049-0.092] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
1349	chr4	100248641	100248642	rs145452708	31358974	Evangelou E	2019-07-29	Nat Hum Behav	New alcohol-related genes suggest shared genetic mechanisms with neuropsychiatric disorders.	Alcohol consumption	480,842 European ancestry individuals	NA	4q23	ADH1B, ADH1C	rs145452708-C	0.0136	1E-125		0.0136	[0.0042-0.023] unit decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1349	chr4	100248641	100248642	rs145452708	28937693	Clarke TK	2017-07-25	Mol Psychiatry	Genome-wide association study of alcohol consumption and genetic overlap with other health-related traits in UK Biobank (N=112 117).	Alcohol consumption in current drinkers	108,309 European ancestry individuals	NA	4q23	ADH1B, ADH1C	rs145452708-C	0.01	1E-30		0.035	[0.029-0.041] unit decrease	Affymetrix [12489781] (imputed)	N
1349	chr4	100248641	100248642	rs145452708	28937693	Clarke TK	2017-07-25	Mol Psychiatry	Genome-wide association study of alcohol consumption and genetic overlap with other health-related traits in UK Biobank (N=112 117).	Alcohol consumption	59,088 European ancestry females, 53,029 European ancestry males	NA	4q23	ADH1B, ADH1C	rs145452708-C	0.01	4E-13	(men)	0.031	[0.023-0.039] unit decrease	Affymetrix [12489781] (imputed)	N
1349	chr4	100248641	100248642	rs145452708	28937693	Clarke TK	2017-07-25	Mol Psychiatry	Genome-wide association study of alcohol consumption and genetic overlap with other health-related traits in UK Biobank (N=112 117).	Alcohol consumption	59,088 European ancestry females, 53,029 European ancestry males	NA	4q23	ADH1B, ADH1C	rs145452708-C	0.01	3E-19	(women)	0.037	[0.029-0.045] unit decrease	Affymetrix [12489781] (imputed)	N
1349	chr4	100248641	100248642	rs145452708	28937693	Clarke TK	2017-07-25	Mol Psychiatry	Genome-wide association study of alcohol consumption and genetic overlap with other health-related traits in UK Biobank (N=112 117).	Alcohol consumption	59,088 European ancestry females, 53,029 European ancestry males	NA	4q23	ADH1B, ADH1C	rs145452708-C	0.01	1E-30		0.034	[0.028-0.04] unit decrease	Affymetrix [12489781] (imputed)	N
1349	chr4	100250418	100250419	rs1789891	28714907	Treutlein J	2017-07-17	Genes (Basel)	Genetic Contribution to Alcohol Dependence: Investigation of a Heterogeneous German Sample of Individuals with Alcohol Dependence, Chronic Alcoholic Pancreatitis, and Alcohol-Related Cirrhosis.	Alcohol dependence	1,331 German ancestry cases, 1,934 German ancestry controls	NA	4q23	ADH1B, ADH1C	rs1789891-A	0.1407	2E-8		1.469		Illumina [194024]	N
1349	chr4	100250418	100250419	rs1789891	22004471	Frank J	2011-10-18	Addict Biol	Genome-wide significant association between alcohol dependence and a variant in the ADH gene cluster.	Alcohol dependence	1,333 European ancestry male cases, 2,168 European ancestry male controls	NA	4q23	ADH1C, ADH1B	rs1789891-?	NR	1E-8		1.46	[1.28-1.67]	Illumina [463044]	N
1349	chr4	100250418	100250419	rs1789891	18846501	Sonuga-Barke EJ	2008-10-07	Am J Med Genet B Neuropsychiatr Genet	Does parental expressed emotion moderate genetic effects in ADHD? An exploration using a genome wide association scan.	Conduct disorder (maternal expressed emotions interaction)	909 European ancestry trios	NA	4q23	ADH1C	rs1789891-A	0.14	3E-6	(maternal warmth)	1.47	[NR] unit increase	Perlegen [429901]	N
1349	chr4	100250657	100250658	rs1789892	34020725	Reddy JS	2021-05-21	Acta Neuropathol Commun	Genome-wide analysis identifies a novel LINC-PINT splice variant associated with vascular amyloid pathology in Alzheimer's disease.	Cerebral amyloid angiopathy x sex interaction in Alzheimer's disease	370 European ancestry men, 451 European ancestry women	NA		ADH1C	rs1789892-A	0.4	4E-6				Illumina [1679420] (imputed)	N
1349	chr4	100250657	100250658	rs1789892	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Alcohol consumption (drinks per week)	414,343 European ancestry individuals	NA		ADH1C	rs1789892-A	0.4198	5E-22		0.021832775	[0.017-0.026] unit increase	Affymetrix [11514936] (imputed)	N
1349	chr4	100250969	100250970	rs2173201	24166409	Gelernter J	2014-01-01	Mol Psychiatry	Genome-wide association study of alcohol dependence:significant findings in African- and European-Americans including novel risk loci.	Alcohol dependence	4,629 African American individuals, 5,131 European ancestry individuals	801 African American individuals, 1,746 European ancestry individuals	4q23	intergenic	rs2173201-?	NR	5E-6				Illumina [up to 10421983] (imputed)	N
1349	chr4	100250969	100250970	rs2173201	24166409	Gelernter J	2014-01-01	Mol Psychiatry	Genome-wide association study of alcohol dependence:significant findings in African- and European-Americans including novel risk loci.	Alcohol dependence	4,629 African American individuals, 5,131 European ancestry individuals	801 African American individuals, 1,746 European ancestry individuals	4q23	intergenic	rs2173201-?	0.453	1E-10	(AA)	0.0268	NR unit decrease (AA, GCD Discovery)	Illumina [up to 10421983] (imputed)	N
1349	chr4	100250969	100250970	rs2173201	24166409	Gelernter J	2014-01-01	Mol Psychiatry	Genome-wide association study of alcohol dependence:significant findings in African- and European-Americans including novel risk loci.	Alcohol dependence	2,415 African American cases, 1,798 African American controls, 2,669 European ancestry cases, 2,002 European ancestry controls	324 African American cases, 327 African American controls, 2,269 European ancestry cases, 2,975 European ancestry controls	4q23	intergenic	rs2173201-C	0.773	2E-6		1.2004802	NR (EA, German Sample)	Illumina [up to 10421983] (imputed)	N
1349	chr4	100250969	100250970	rs2173201	24166409	Gelernter J	2014-01-01	Mol Psychiatry	Genome-wide association study of alcohol dependence:significant findings in African- and European-Americans including novel risk loci.	Alcohol dependence	2,415 African American cases, 1,798 African American controls, 2,669 European ancestry cases, 2,002 European ancestry controls	324 African American cases, 327 African American controls, 2,269 European ancestry cases, 2,975 European ancestry controls	4q23	intergenic	rs2173201-C	0.548	1E-7	(AA)	1.3297873	NR (AA, GCD Discovery)	Illumina [up to 10421983] (imputed)	N
1349	chr4	100251066	100251067	rs2866152	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	4q23	NR	rs2866152-C	NR	2E-12		0.0196	[0.014-0.025] unit increase	Affymetrix [9000000] (imputed)	N
1349	chr4	100251066	100251067	rs2866152	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	4q23	NR	rs2866152-C	NR	8E-10		0.0179	[0.012-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
1349	chr4	100252307	100252308	rs113659074	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Alcohol consumption (drinks per week)	414,343 European ancestry individuals	NA	4q23	ADH1C	rs113659074-T	0.0606	1E-22		0.04589464	[0.037-0.055] unit decrease	Affymetrix [11514936] (imputed)	N
1349	chr4	100252307	100252308	rs113659074	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	4q23	ADH1B, ADH1C	rs113659074-G	0.933111902	2E-6		1.112315	[1.06-1.16]	Illumina [10439017] (imputed)	N
1349	chr4	100252559	100252560	rs3114045	30336701	Sanchez-Roige S	2018-10-19	Am J Psychiatry	Genome-Wide Association Study Meta-Analysis of the Alcohol Use Disorders Identification Test (AUDIT) in Two Population-Based Cohorts.	Alcohol use disorder (total score)	141,932 European ancestry individuals	NA	4q23	ADH1C	rs3114045-T	NR	7E-13		7.18	[NR] z score decrease	NR [16213998]	N
1349	chr4	100253707	100253708	rs1154433	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Problematic alcohol use (MTAG)	972,915 European ancestry individuals	NA	4q23	NR	rs1154433-G	0.4076	1E-35		0.026113842	[0.022-0.03] unit increase	Affymetrix [10613246] (imputed)	N
1349	chr4	100253707	100253708	rs1154433	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol consumption (drinks per week) (MTAG)	972,915 European ancestry individuals	NA	4q23	NR	rs1154433-G	0.399	3E-36		0.022084095	[0.019-0.026] unit increase	Affymetrix [NR] (imputed)	N
1349	chr4	100253707	100253708	rs1154433	30940813	Kranzler HR	2019-04-02	Nat Commun	Genome-wide association study of alcohol consumption and use disorder in 274,424 individuals from multiple populations.	Alcohol use disorder	34,658 European American cases, 167,346 European American controls, 17,267 African American cases, 39,381 African American controls, 3,449 Latino American cases, 10,726 Latino American controls, 164 East Asian American cases, 1,210 East Asian American controls, 46 South Asian American cases, 144 South Asian American controls	NA	4q23	ADH1C	rs1154433-G	0.596	1E-14	(EA)	1.0699764	[1.05-1.09]	Affymetrix [up to 12500000] (imputed)	N
1349	chr4	100254519	100254520	rs10028756	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week)	up to 941,280 European ancestry individuals	NA	4q23	NR	rs10028756-A	0.129457	1E-17	(Conditioned on chr4:100443853, chr4:100286085,chr4:100260679 ,chr4:100444363, chr4:100239319)	0.018574761	[0.014-0.023] unit decrease	NR [~ 10000000] (imputed)	N
1349	chr4	100254934	100254935	rs3846448	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q23	NR	rs3846448-A	0.2021	9E-18	(S100A11)	0.1826	NR unit decrease	Illumina [1671387] (imputed)	N
1349	chr4	100254934	100254935	rs3846448	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q23	NR	rs3846448-A	0.2021	4E-17	(SERPINC1)	0.004994	NR unit decrease	Illumina [1671387] (imputed)	N
1349	chr4	100256198	100256199	rs1229978	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q23	NR	rs1229978-C	0.3467	3E-45	(S100A11)	0.2257	NR unit decrease	Illumina [1671387] (imputed)	N
1349	chr4	100256198	100256199	rs1229978	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q23	NR	rs1229978-C	0.3467	2E-40	(SERPINC1)	0.006039	NR unit decrease	Illumina [1671387] (imputed)	N
1349	chr4	100256198	100256199	rs1229978	30940813	Kranzler HR	2019-04-02	Nat Commun	Genome-wide association study of alcohol consumption and use disorder in 274,424 individuals from multiple populations.	Alcohol use disorder (consumption score)	200,680 European American individuals, 56,495 African American individuals, 14,112 Latino American individuals, 1,366 East Asian American individuals, 189 South Asian American individuals	NA	4q23	ADH1C	rs1229978-C	0.403	1E-14	(EA)	0.04224	[0.031-0.053] unit increase	Affymetrix [up to 12500000] (imputed)	N
1349	chr4	100256198	100256199	rs1229978	24166409	Gelernter J	2014-01-01	Mol Psychiatry	Genome-wide association study of alcohol dependence:significant findings in African- and European-Americans including novel risk loci.	Alcohol dependence	4,629 African American individuals, 5,131 European ancestry individuals	801 African American individuals, 1,746 European ancestry individuals	4q23	intergenic	rs1229978-?	NR	5E-6				Illumina [up to 10421983] (imputed)	N
1349	chr4	100256983	100256984	rs1789896	24166409	Gelernter J	2014-01-01	Mol Psychiatry	Genome-wide association study of alcohol dependence:significant findings in African- and European-Americans including novel risk loci.	Alcohol dependence	4,629 African American individuals, 5,131 European ancestry individuals	801 African American individuals, 1,746 European ancestry individuals	4q23	intergenic	rs1789896-?	NR	5E-6				Illumina [up to 10421983] (imputed)	N
1349	chr4	100258006	100258007	rs1612735	30940813	Kranzler HR	2019-04-02	Nat Commun	Genome-wide association study of alcohol consumption and use disorder in 274,424 individuals from multiple populations.	Alcohol use disorder	34,658 European American cases, 167,346 European American controls, 17,267 African American cases, 39,381 African American controls, 3,449 Latino American cases, 10,726 Latino American controls, 164 East Asian American cases, 1,210 East Asian American controls, 46 South Asian American cases, 144 South Asian American controls	NA	4q23	ADH1C	rs1612735-T	0.656	8E-19		8.86	NR z score decrease	Affymetrix [up to 12500000] (imputed)	N
1349	chr4	100258154	100258155	rs1614972	24166409	Gelernter J	2014-01-01	Mol Psychiatry	Genome-wide association study of alcohol dependence:significant findings in African- and European-Americans including novel risk loci.	Alcohol dependence	4,629 African American individuals, 5,131 European ancestry individuals	801 African American individuals, 1,746 European ancestry individuals	4q23	ADH1C	rs1614972-?	0.522	3E-9	(AA)	0.0277	NR unit decrease (AA, GCD Discovery)	Illumina [up to 10421983] (imputed)	N
1349	chr4	100258154	100258155	rs1614972	24166409	Gelernter J	2014-01-01	Mol Psychiatry	Genome-wide association study of alcohol dependence:significant findings in African- and European-Americans including novel risk loci.	Alcohol dependence	2,415 African American cases, 1,798 African American controls, 2,669 European ancestry cases, 2,002 European ancestry controls	324 African American cases, 327 African American controls, 2,269 European ancestry cases, 2,975 European ancestry controls	4q23	ADH1C	rs1614972-C	0.478	4E-7	(AA)	1.3297873	NR (AA, GCD Discovery)	Illumina [up to 10421983] (imputed)	N
1349	chr4	100258380	100258381	rs1662033	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q23	NR	rs1662033-G	0.27	2E-24	(SERPINC1)	0.00523	NR unit decrease	Illumina [1671387] (imputed)	N
1349	chr4	100258380	100258381	rs1662033	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q23	NR	rs1662033-G	0.27	1E-25	(S100A11)	0.1918	NR unit decrease	Illumina [1671387] (imputed)	N
1349	chr4	100259125	100259126	rs3846449	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	4q23	NR	rs3846449-C	0.222	2E-17		0.0134997	[0.01-0.017] unit decrease	NR [~ 9732723] (imputed)	N
1349	chr4	100259350	100259351	rs1693456	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	4q23	NR	rs1693456-G	0.58074	1E-9		0.012824	[0.0087-0.017] unit decrease	NR [NR]	N
1349	chr4	100260544	100260545	rs62307295	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	4q23	ADH1C	rs62307295-A	0.0958	2E-9		0.0277	[0.019-0.037] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1349	chr4	100260678	100260679	rs561222871	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week)	up to 941,280 European ancestry individuals	NA	4q23	NR	rs561222871-T	0.047377	7E-27	(Conditioned on chr4:100444363, chr4:100239319)	0.03880677	[0.032-0.046] unit decrease	NR [~ 10000000] (imputed)	N
1349	chr4	100261037	100261038	rs2298755	28937693	Clarke TK	2017-07-25	Mol Psychiatry	Genome-wide association study of alcohol consumption and genetic overlap with other health-related traits in UK Biobank (N=112 117).	Alcohol consumption in current drinkers	108,309 European ancestry individuals	NA	4q23	ADH1C	rs2298755-G	0.41	1E-9		0.019	[0.013-0.025] unit increase	Affymetrix [12489781] (imputed)	N
1349	chr4	100262241	100262242	rs141973904	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	4q23	NR	rs141973904-T	0.0168	3E-139		0.133706	[0.12-0.14] unit decrease	NR [~ 9732723] (imputed)	N
1349	chr4	100262241	100262242	rs141973904	29058377	Sanchez-Roige S	2017-10-23	Addict Biol	Genome-wide association study of alcohol use disorder identification test (AUDIT) scores in 20 328 research participants of European ancestry.	Alcohol consumption over the past year	20,328 European ancestry individuals	NA	4q23	ADH1C	rs141973904-T	0.023	4E-7		0.047	[0.027-0.067] unit decrease	Illumina [13280794] (imputed)	N
1349	chr4	100263382	100263383	rs904095	24166409	Gelernter J	2014-01-01	Mol Psychiatry	Genome-wide association study of alcohol dependence:significant findings in African- and European-Americans including novel risk loci.	Alcohol dependence	4,629 African American individuals, 5,131 European ancestry individuals	801 African American individuals, 1,746 European ancestry individuals	4q23	ADH1C	rs904095-?	NR	2E-6				Illumina [up to 10421983] (imputed)	N
1349	chr4	100263777	100263778	rs1789911	24166409	Gelernter J	2014-01-01	Mol Psychiatry	Genome-wide association study of alcohol dependence:significant findings in African- and European-Americans including novel risk loci.	Alcohol dependence	4,629 African American individuals, 5,131 European ancestry individuals	801 African American individuals, 1,746 European ancestry individuals	4q23	ADH1C	rs1789911-?	NR	5E-6				Illumina [up to 10421983] (imputed)	N
1349	chr4	100266132	100266133	rs2241894	24166409	Gelernter J	2014-01-01	Mol Psychiatry	Genome-wide association study of alcohol dependence:significant findings in African- and European-Americans including novel risk loci.	Alcohol dependence	4,629 African American individuals, 5,131 European ancestry individuals	801 African American individuals, 1,746 European ancestry individuals	4q23	ADH1C	rs2241894-?	0.46	5E-10	(AA)	0.0265	NR unit decrease (AA, GCD Discovery)	Illumina [up to 10421983] (imputed)	N
1349	chr4	100266132	100266133	rs2241894	24166409	Gelernter J	2014-01-01	Mol Psychiatry	Genome-wide association study of alcohol dependence:significant findings in African- and European-Americans including novel risk loci.	Alcohol dependence	2,415 African American cases, 1,798 African American controls, 2,669 European ancestry cases, 2,002 European ancestry controls	324 African American cases, 327 African American controls, 2,269 European ancestry cases, 2,975 European ancestry controls	4q23	ADH1C	rs2241894-T	0.542	8E-7	(AA)	1.3192612	NR (AA, GCD Discovery)	Illumina [up to 10421983] (imputed)	N
1349	chr4	100267155	100267156	rs6532815	24166409	Gelernter J	2014-01-01	Mol Psychiatry	Genome-wide association study of alcohol dependence:significant findings in African- and European-Americans including novel risk loci.	Alcohol dependence	4,629 African American individuals, 5,131 European ancestry individuals	801 African American individuals, 1,746 European ancestry individuals	4q23	ADH1C	rs6532815-G	0.069	2E-6	(EA)	0.0019	NR unit decrease (EA, SAGE Discovery)	Illumina [up to 10421983] (imputed)	N
1349	chr4	100267238	100267239	rs1662051	24166409	Gelernter J	2014-01-01	Mol Psychiatry	Genome-wide association study of alcohol dependence:significant findings in African- and European-Americans including novel risk loci.	Alcohol dependence	4,629 African American individuals, 5,131 European ancestry individuals	801 African American individuals, 1,746 European ancestry individuals	4q23	ADH1C	rs1662051-?	NR	2E-6				Illumina [up to 10421983] (imputed)	N
1349	chr4	100267371	100267372	rs12639833	24166409	Gelernter J	2014-01-01	Mol Psychiatry	Genome-wide association study of alcohol dependence:significant findings in African- and European-Americans including novel risk loci.	Alcohol dependence	4,629 African American individuals, 5,131 European ancestry individuals	801 African American individuals, 1,746 European ancestry individuals	4q23	ADH1C	rs12639833-?	NR	6E-6				Illumina [up to 10421983] (imputed)	N
1349	chr4	100267371	100267372	rs12639833	24166409	Gelernter J	2014-01-01	Mol Psychiatry	Genome-wide association study of alcohol dependence:significant findings in African- and European-Americans including novel risk loci.	Alcohol dependence	4,629 African American individuals, 5,131 European ancestry individuals	801 African American individuals, 1,746 European ancestry individuals	4q23	ADH1C	rs12639833-?	0.46	3E-10	(AA)	0.0266	NR unit decrease (AA, GCD Discovery)	Illumina [up to 10421983] (imputed)	N
1349	chr4	100267371	100267372	rs12639833	24166409	Gelernter J	2014-01-01	Mol Psychiatry	Genome-wide association study of alcohol dependence:significant findings in African- and European-Americans including novel risk loci.	Alcohol dependence	2,415 African American cases, 1,798 African American controls, 2,669 European ancestry cases, 2,002 European ancestry controls	324 African American cases, 327 African American controls, 2,269 European ancestry cases, 2,975 European ancestry controls	4q23	ADH1C	rs12639833-C	0.5409999999999999	7E-7	(AA)	1.3192612	NR (AA, GCD Discovery)	Illumina [up to 10421983] (imputed)	N
1349	chr4	100267671	100267672	rs283412	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Alcohol consumption (drinks per week)	414,343 European ancestry individuals	NA	4q23	ADH1C	rs283412-A	0.0231	7E-13		0.053402204	[0.039-0.068] unit decrease	Affymetrix [11514936] (imputed)	N
1349	chr4	100267671	100267672	rs283412	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	4q23	NR	rs283412-G	0.973	1E-21		0.0392146	[0.031-0.047] unit increase	NR [~ 9732723] (imputed)	N
1349	chr4	100268189	100268190	rs283413	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	4q23	NR	rs283413-C	NR	5E-11		0.0832	[0.059-0.108] unit increase	Affymetrix [9000000] (imputed)	N
1349	chr4	100268189	100268190	rs283413	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	4q23	NR	rs283413-C	NR	4E-11		0.0838	[0.059-0.109] unit decrease	Affymetrix [9000000] (imputed)	N
1349	chr4	100268552	100268553	rs4147542	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q23	NR	rs4147542-C	0.397111	5E-10				Affymetrix, Illumina [24653286] (imputed)	N
1350	chr4	100270255	100270256	rs13147189	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	4q23	ADH1B	rs13147189-T	0.683123	3E-12		0.0143403	[0.01-0.018] unit increase	Affymetrix [NR] (imputed)	N
1350	chr4	100270606	100270607	rs283415	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q23	NR	rs283415-C	0.392	7E-42	(S100A11)	0.2155	NR unit decrease	Illumina [1671387] (imputed)	N
1350	chr4	100270606	100270607	rs283415	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q23	NR	rs283415-C	0.392	7E-39	(SERPINC1)	0.005848	NR unit decrease	Illumina [1671387] (imputed)	N
1350	chr4	100270818	100270818	rs35081954	28937693	Clarke TK	2017-07-25	Mol Psychiatry	Genome-wide association study of alcohol consumption and genetic overlap with other health-related traits in UK Biobank (N=112 117).	Alcohol consumption	59,088 European ancestry females, 53,029 European ancestry males	NA	4q23	ADH1C	rs35081954-CTG	0.42	2E-9		0.018	[0.012-0.024] unit increase	Affymetrix [12489781] (imputed)	N
1350	chr4	100270960	100270964	rs142783062	30940813	Kranzler HR	2019-04-02	Nat Commun	Genome-wide association study of alcohol consumption and use disorder in 274,424 individuals from multiple populations.	Alcohol use disorder (consumption score)	200,680 European American individuals, 56,495 African American individuals, 14,112 Latino American individuals, 1,366 East Asian American individuals, 189 South Asian American individuals	NA	4q23	ADH1C	rs142783062-?	0.345	1E-22		9.82	NR z score increase	Affymetrix [up to 12500000] (imputed)	N
1350	chr4	100272033	100272034	rs34664835	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LRIT2	5,355 Icelandic ancestry individuals	NA	4q23		rs34664835-T	0.01114	5E-14		0.154761	[0.11-0.19] unit increase	Illumina [7506463] (imputed)	N
1350	chr4	100272033	100272034	rs34664835	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ADH5	5,357 Icelandic ancestry individuals	NA	4q23		rs34664835-T	0.01114	9E-18		0.745892	[0.58-0.92] unit decrease	Illumina [7506463] (imputed)	N
1350	chr4	100272054	100272055	rs1662047	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q23	NR	rs1662047-C	0.2718	9E-26	(S100A11)	0.1905	NR unit decrease	Illumina [1671387] (imputed)	N
1350	chr4	100272054	100272055	rs1662047	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q23	NR	rs1662047-C	0.2718	7E-25	(SERPINC1)	0.005229	NR unit decrease	Illumina [1671387] (imputed)	N
1350	chr4	100272058	100272059	rs1662046	26545630	Deming Y	2015-09-25	Neurobiol Aging	A potential endophenotype for Alzheimer's disease: cerebrospinal fluid clusterin.	Cerebrospinal fluid clusterin levels	300 Alzheimer's disease cases, 373 controls	NA	4q23	ADH1C	rs1662046-?		3E-6		0.451	[NR] unit increase	Illumina [5970354] (imputed)	N
1350	chr4	100273169	100273170	rs34761493	24166409	Gelernter J	2014-01-01	Mol Psychiatry	Genome-wide association study of alcohol dependence:significant findings in African- and European-Americans including novel risk loci.	Alcohol dependence	4,629 African American individuals, 5,131 European ancestry individuals	801 African American individuals, 1,746 European ancestry individuals	4q23	ADH1C	rs34761493-A	0.07	2E-6	(EA)	0.00168	NR unit decrease (EA, SAGE Discovery)	Illumina [up to 10421983] (imputed)	N
1350	chr4	100273593	100273594	rs36052336	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week)	up to 941,280 European ancestry individuals	NA	4q23	NR	rs36052336-G	0.061496	1E-9	(Conditioned on chr4:99713350, chr4:101243023,chr4:100000136 ,chr4:100254520, chr4:100443853, chr4:100286085, chr4:100260679, chr4:100444363, chr4:100239319)	0.018428808	[0.012-0.024] unit decrease	NR [~ 10000000] (imputed)	N
1350	chr4	100274156	100274157	rs4147541	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q23	NR	rs4147541-C	0.3049	5E-26	(SERPINC1)	0.005303	NR unit increase	Illumina [1671387] (imputed)	N
1350	chr4	100274156	100274157	rs4147541	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q23	NR	rs4147541-C	0.3049	3E-26	(S100A11)	0.1909	NR unit increase	Illumina [1671387] (imputed)	N
1350	chr4	100274285	100274286	rs1789924	28714907	Treutlein J	2017-07-17	Genes (Basel)	Genetic Contribution to Alcohol Dependence: Investigation of a Heterogeneous German Sample of Individuals with Alcohol Dependence, Chronic Alcoholic Pancreatitis, and Alcohol-Related Cirrhosis.	Alcohol dependence	1,331 German ancestry cases, 1,934 German ancestry controls	NA	4q23	ADH1C	rs1789924-T	0.387	1E-7		1.314		Illumina [194024]	N
1350	chr4	100274285	100274286	rs1789924	24166409	Gelernter J	2014-01-01	Mol Psychiatry	Genome-wide association study of alcohol dependence:significant findings in African- and European-Americans including novel risk loci.	Alcohol dependence	4,629 African American individuals, 5,131 European ancestry individuals	801 African American individuals, 1,746 European ancestry individuals	4q23	ADH1C	rs1789924-?	NR	6E-6				Illumina [up to 10421983] (imputed)	N
1350	chr4	100274285	100274286	rs1789924	21437268	McKay JD	2011-03-17	PLoS Genet	A genome-wide association study of upper aerodigestive tract cancers conducted within the INHANCE consortium.	Oral cavity and pharyngeal cancer	2,091 European ancestry cases, 8,334 European ancestry controls	6,574 European ancestry cases, 7,892 European ancestry controls	4q23	ADH1C	rs1789924-C	NR	3E-7		1.12	[1.07-1.17]	Illumina [294620]	N
1350	chr4	100274982	100274983	rs11499824	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	4q23	ADH1C	rs11499824-T	0.273167	8E-9		0.014348895	[0.0095-0.0192] unit decrease	Affymetrix [93095623] (imputed)	N
1350	chr4	100277431	100277432	rs10006545	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	4q23		rs10006545-A	NR	2E-8		0.0121	[0.008-0.0162] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
1350	chr4	100278696	100278697	rs4699741	24166409	Gelernter J	2014-01-01	Mol Psychiatry	Genome-wide association study of alcohol dependence:significant findings in African- and European-Americans including novel risk loci.	Alcohol dependence	4,629 African American individuals, 5,131 European ancestry individuals	801 African American individuals, 1,746 European ancestry individuals	4q23	intergenic	rs4699741-C	0.227	1E-6	(EA)	0.00172	NR unit decrease (EA, SAGE Discovery)	Illumina [up to 10421983] (imputed)	N
1350	chr4	100278696	100278697	rs4699741	24166409	Gelernter J	2014-01-01	Mol Psychiatry	Genome-wide association study of alcohol dependence:significant findings in African- and European-Americans including novel risk loci.	Alcohol dependence	2,415 African American cases, 1,798 African American controls, 2,669 European ancestry cases, 2,002 European ancestry controls	324 African American cases, 327 African American controls, 2,269 European ancestry cases, 2,975 European ancestry controls	4q23	intergenic	rs4699741-T	0.9437	6E-8	(EA)	1.5698587	NR (EA, German Sample)	Illumina [up to 10421983] (imputed)	N
1350	chr4	100279331	100279332	rs1614377	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	4q23		rs1614377-?	NR	2E-9	(conditional)	0.0141241	[0.0095-0.0187] unit decrease	NR [6912294] (imputed)	N
1350	chr4	100281077	100281078	rs12649804	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	4q23	NR	rs12649804-C	0.269855	1E-11		0.014169	[0.01-0.018] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
1350	chr4	100281077	100281078	rs12649804	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	4q23	NR	rs12649804-C	0.2698	2E-10		0.01334	[0.0093-0.0174] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
1350	chr4	100286084	100286085	rs2165670	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week)	up to 941,280 European ancestry individuals	NA	4q23	NR	rs2165670-A	0.106337	2E-22	(Conditioned on chr4:100260679, chr4:100444363,chr4:100239319)	0.02308038	[0.018-0.028] unit increase	NR [~ 10000000] (imputed)	N
1350	chr4	100287811	100287812	rs1583974	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	4q23	ADH1B	rs1583974-C	0.584949	7E-20		0.0183036	[0.014-0.022] unit increase	Affymetrix [NR] (imputed)	N
1350	chr4	100288026	100288027	rs1154443	34130359	Curtis SW	2021-06-15	Genet Epidemiol	FAT4 identified as a potential modifier of orofacial cleft laterality.	Left unilateral cleft lip	68 Asian ancestry cases, 78 European ancestry cases, 70 Hispanic cases, 1,626 controls	NA	4q23	NR	rs1154443-?		3E-6		2.02	[1.50-2.71]	Illumina [539473] (imputed)	N
1350	chr4	100288465	100288465	rs139063741	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	4q23		rs139063741-GAGCCCATCCCTTTGTTTC	NR	2E-10		0.0149	[0.01-0.019] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
1350	chr4	100290278	100290279	rs72681920	24166409	Gelernter J	2014-01-01	Mol Psychiatry	Genome-wide association study of alcohol dependence:significant findings in African- and European-Americans including novel risk loci.	Alcohol dependence	4,629 African American individuals, 5,131 European ancestry individuals	801 African American individuals, 1,746 European ancestry individuals	4q23	intergenic	rs72681920-A	0.0504	1E-6	(EA)	0.00125	NR unit decrease (EA, SAGE Discovery)	Illumina [up to 10421983] (imputed)	N
1350	chr4	100290814	100290815	rs62305780	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter alcoholic beverage consumption	336,448 European ancestry individuals	39,924 European ancestry individuals	4q23	ADH1C	rs62305780-G	0.1025	3E-17		0.0144	[0.011-0.018] unit increase	Affymetrix [~ 7740000] (imputed)	N
1350	chr4	100293108	100293109	rs62305782	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Alcohol consumption (drinks per week)	414,343 European ancestry individuals	NA	4q23	ADH1C	rs62305782-T	0.1165	1E-20		0.032479502	[0.026-0.039] unit increase	Affymetrix [11514936] (imputed)	N
1350	chr4	100293541	100293542	rs35002104	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	4q23	ADH1C	rs35002104-T	NR	3E-8		0.0236585	[0.015-0.032] unit decrease	Affymetrix [321016] (imputed)	N
1350	chr4	100295239	100295240	rs56279505	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Parasitemia in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	4q23	NR	rs56279505-?	NR	8E-7				Affymetrix [5486770] (imputed)	N
1350	chr4	100299638	100299639	rs1908961	33730874	Said MA	2021-03-18	Arterioscler Thromb Vasc Biol	Genome-Wide Association Study and Identification of a Protective Missense Variant on Lipoprotein(a) Concentration: Protective Missense Variant on Lipoprotein(a) Concentration.	Lipoprotein (a) levels	348,591 European ancestry individuals, 6,000 African ancestry individuals, 9,116 Asian ancestry individuals, 7,505 individuals		4q23	ADH7	rs1908961-A	NR	4E-13		0.0139	[0.0089-0.0189] nmol/l decrease	NR [19000000] (imputed)	N
1350	chr4	100301047	100301048	rs1826906	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q23	NR	rs1826906-C	0.3467	1E-8	(S100A11)	0.1017	NR unit increase	Illumina [1671387] (imputed)	N
1350	chr4	100301047	100301048	rs1826906	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q23	NR	rs1826906-C	0.3467	1E-10	(SERPINC1)	0.00316	NR unit increase	Illumina [1671387] (imputed)	N
1350	chr4	100301125	100301126	rs1826907	24166409	Gelernter J	2014-01-01	Mol Psychiatry	Genome-wide association study of alcohol dependence:significant findings in African- and European-Americans including novel risk loci.	Alcohol dependence	4,629 African American individuals, 5,131 European ancestry individuals	801 African American individuals, 1,746 European ancestry individuals	4q23	intergenic	rs1826907-?	NR	3E-7				Illumina [up to 10421983] (imputed)	N
1350	chr4	100301240	100301241	rs12642639	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	4q23		rs12642639-?	NR	2E-9		0.0152566	[0.01-0.02] unit decrease	NR [6912294] (imputed)	N
1350	chr4	100304247	100304248	rs12648443	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	4q23	NR	rs12648443-C	NR	1E-11		0.0199	[0.014-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
1350	chr4	100304544	100304545	rs1372680	28714907	Treutlein J	2017-07-17	Genes (Basel)	Genetic Contribution to Alcohol Dependence: Investigation of a Heterogeneous German Sample of Individuals with Alcohol Dependence, Chronic Alcoholic Pancreatitis, and Alcohol-Related Cirrhosis.	Alcohol dependence	1,331 German ancestry cases, 1,934 German ancestry controls	NA	4q23	intergenic	rs1372680-A	0.08583	3E-6		1.482		Illumina [194024]	N
1350	chr4	100310906	100310907	rs284782	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q23	NR	rs284782-T	0.4686	2E-15	(S100A11)	0.1356	NR unit decrease	Illumina [1671387] (imputed)	N
1350	chr4	100310906	100310907	rs284782	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q23	NR	rs284782-T	0.4686	1E-18	(SERPINC1)	0.004143	NR unit decrease	Illumina [1671387] (imputed)	N
1350	chr4	100312708	100312709	rs34361428	33290381	Li W	2020-12-07	Psychiatr Genet	The influence of regression models on genome-wide association studies of alcohol dependence: a comparison of binary and quantitative analyses.	Alcohol dependence	739 European ancestry cases, 1,251 European ancestry controls	NA	4q23	ADH1A, ADH1B, ADH1C, METAP1	rs34361428-G	0.2	1E-6	(model 1)	0.47	[0.27-0.67] unit increase	Illumina [2100000] (imputed)	N
1350	chr4	100313349	100313350	rs114112910	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Alcohol consumption (drinks per week)	414,343 European ancestry individuals	NA	4q23	ADH7	rs114112910-A	0.9829	1E-8		0.04920817	[0.032-0.066] unit decrease	Affymetrix [11514936] (imputed)	N
1350	chr4	100321364	100321365	rs1442493	33290381	Li W	2020-12-07	Psychiatr Genet	The influence of regression models on genome-wide association studies of alcohol dependence: a comparison of binary and quantitative analyses.	Alcohol dependence	739 European ancestry cases, 1,251 European ancestry controls	NA	4q23	ADH4, ADH1C, EIF4E	rs1442493-G	0.85	7E-6	(model 1)	0.42	[0.24-0.6] unit decrease	Illumina [2100000] (imputed)	N
1350	chr4	100321364	100321365	rs1442493	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q23	NR	rs1442493-A	0.2317	4E-20	(S100A11)	0.1821	NR unit increase	Illumina [1671387] (imputed)	N
1350	chr4	100321364	100321365	rs1442493	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q23	NR	rs1442493-A	0.2317	2E-21	(SERPINC1)	0.005237	NR unit increase	Illumina [1671387] (imputed)	N
1350	chr4	100322444	100322445	rs991316	19609347	Adeyemo A	2009-07-17	PLoS Genet	A genome-wide association study of hypertension and blood pressure in African Americans.	Hypertension	509 African American cases, 508 African American controls	366 West African ancestry cases, 614 West African ancestry controls	4q23	ADH7	rs991316-T	0.45	5E-6		1.62	[NR]	Affymetrix [808465]	N
1350	chr4	100322785	100322786	rs17028973	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter alcoholic beverage consumption	336,448 European ancestry individuals	39,924 European ancestry individuals		ADH7	rs17028973-T	0.8118	5E-15		0.0103	[0.0078-0.0128] unit increase	Affymetrix [~ 7740000] (imputed)	N
1350	chr4	100324463	100324464	rs2584462	28373541	Yang J	2017-04-03	Proc Natl Acad Sci U S A	Genetic signatures of high-altitude adaptation in Tibetans.	High altitude adaptation	3,008 Tibetan (founder/genetic isolate) individuals and 7,287 East Asian individuals	NA	4q23	ADH7	rs2584462-G	0.549	4E-9				Illumina [7300000] (imputed)	N
1350	chr4	100335891	100335892	rs28712290	31151762	Gelernter J	2019-04-08	Biol Psychiatry	Genome-wide Association Study of Maximum Habitual Alcohol Intake in >140,000 U.S. European and African American Veterans Yields Novel Risk Loci.	Maximum habitual alcohol consumption	126,936 European ancestry individuals, 17,029 African American individuals	NA	4q23	NR	rs28712290-C	NR	6E-7	(AA)	0.158073	[0.096-0.22] unit decrease	Affymetrix [up to 6007810] (imputed)	N
1350	chr4	100341860	100341861	rs971074	21437268	McKay JD	2011-03-17	PLoS Genet	A genome-wide association study of upper aerodigestive tract cancers conducted within the INHANCE consortium.	Oral cavity and pharyngeal cancer	2,091 European ancestry cases, 8,334 European ancestry controls	6,574 European ancestry cases, 7,892 European ancestry controls	4q23	ADH7	rs971074-G	NR	9E-17		1.33	[1.25-1.43]	Illumina [294620]	N
1350	chr4	100351435	100351436	rs17529509	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q23	ADH7	rs17529509-C	0.926875	8E-17	(ADH7, 11377_19_3)	0.40120703	[0.31-0.5] unit increase	Illumina [> 1000000] (imputed)	N
1350	chr4	100368785	100368786	rs17589306	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ADH7	5,361 Icelandic ancestry individuals	NA	4q23		rs17589306-C	0.0709	4E-24		0.373184	[0.3-0.45] unit decrease	Illumina [7506463] (imputed)	N
1350	chr4	100370684	100370684	rs200191165	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	4q23		rs200191165-GT	NR	5E-15		0.1308	[0.098-0.164] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
1350	chr4	100395413	100395414	rs148915469	23568457	Wade TD	2013-04-09	Int J Eat Disord	Genetic variants associated with disordered eating.	Eating disorders	543 European ancestry female cases, 1,116 European ancestry female controls	NA	4q23	C4orf17, ADH7	rs148915469-C	0.979	8E-6		0.279	[0.16-0.4] unit decrease	Illumina [6150213] (imputed)	N
1351	chr4	100408193	100408194	rs1969097	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Alcohol consumption (drinks per week)	414,343 European ancestry individuals	NA	4q23	C4orf17	rs1969097-A	0.9433	3E-10		0.030320859	[0.021-0.04] unit increase	Affymetrix [11514936] (imputed)	N
1351	chr4	100410221	100410222	rs7693958	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Problematic alcohol use	435,563 European ancestry individuals	NA	4q23	NR	rs7693958-A	0.074	5E-10		6.234	[NR] z score decrease	Affymetrix [14069427] (imputed)	N
1351	chr4	100429756	100429757	rs73832816	29381699	Ravenhall M	2018-01-30	PLoS Genet	Novel genetic polymorphisms associated with severe malaria and under selective pressure in North-eastern Tanzania.	Severe malaria (adjusted for sickle cell variant rs334)	449 Tanzanian ancestry cases, 465 Tanzanian ancestry controls	NA	4q23	C4orf17	rs73832816-?	NR	9E-7	(Recessive)		[NR]	Illumina [15200000] (imputed)	N
1351	chr4	100429756	100429757	rs73832816	29381699	Ravenhall M	2018-01-30	PLoS Genet	Novel genetic polymorphisms associated with severe malaria and under selective pressure in North-eastern Tanzania.	Severe malaria	449 Tanzanian ancestry cases, 465 Tanzanian ancestry controls	NA	4q23	C4orf17	rs73832816-?	NR	4E-7	(Recessive)	3.4602075	[NR]	Illumina [15200000] (imputed)	N
1351	chr4	100443852	100443853	rs17029090	31219150	Ekenberg C	2019-06-13	J Infect Dis	Single nucleotide polymorphisms in HLA alleles are associated with HIV-1 viral load in demographically diverse, ART-naive participants from the START trial.	Pre-treatment viral load in HIV-1 infection	1,398 European ancestry individuals, 572 Black individuals, 418 Hispanic individuals, 13 Asian ancestry individuals, 39 individuals	NA	4q23	C4orf17	rs17029090-G	0.081	2E-16		0.35	[0.27-0.44] unit decrease	Affymetrix [339439]	N
1351	chr4	100443852	100443853	rs17029090	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week)	up to 941,280 European ancestry individuals	NA	4q23	NR	rs17029090-G	0.019896	5E-21	(Conditioned on chr4:100286085, chr4:100260679,chr4:100444363 ,chr4:100239319)	0.049127366	[0.039-0.059] unit decrease	NR [~ 10000000] (imputed)	N
1351	chr4	100444362	100444363	rs79139602	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week)	up to 941,280 European ancestry individuals	NA	4q23	NR	rs79139602-T	0.021061	2E-32	(Conditioned on chr4:100239319)	0.06027231	[0.05-0.07] unit increase	NR [~ 10000000] (imputed)	N
1351	chr4	100444683	100444684	rs13126513	23319000	Luykx JJ	2013-01-15	Mol Psychiatry	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (MHPG)	up to 398 European ancestry individuals	NA	4q23	C4orf17	rs13126513-C		8E-6		0.285	unit increase	Illumina [5767231] (imputed)	N
1351	chr4	100448823	100448824	rs10007975	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	4q23	C4orf17	rs10007975-C	0.75	2E-8		5.59	z-score increase	Affymetrix [4312306] (imputed)	N
1351	chr4	100448823	100448824	rs10007975	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	4q23		rs10007975-?	NR	7E-8				NR [~ 8900000] (imputed)	N
1351	chr4	100469439	100469439	rs140159255	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	4q23		rs140159255-TA	NR	2E-10		0.0162	[0.011-0.021] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
1351	chr4	100477461	100477462	rs11935423	26528553	Davenport ER	2015-11-03	PLoS One	Genome-Wide Association Studies of the Human Gut Microbiota.	Gut microbiome composition (summer)	91 Hutterite individuals	NA	4q23	NR	rs11935423-?	NR	3E-6	(order_Selenomonadales)	0.9751579	[0.58-1.37] unit decrease	Affymetrix [210924]	N
1351	chr4	100487314	100487315	rs28431971	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	4q23	MTTP	rs28431971-G	0.74504	1E-12		0.00327142	[0.0024-0.0041] unit increase	Affymetrix [13995440] (imputed)	N
1351	chr4	100497577	100497578	rs11947558	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very small VLDL	115,082 European ancestry individuals	NA	4q23		rs11947558-C	0.745457	4E-8		0.0254796	[0.016-0.035] unit increase	NR [11722792] (imputed)	N
1351	chr4	100497577	100497578	rs11947558	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very small VLDL	115,082 European ancestry individuals	NA	4q23		rs11947558-C	0.745457	3E-8		0.025861	[0.017-0.035] unit increase	NR [11722792] (imputed)	N
1351	chr4	100499972	100499973	rs28376611	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in IDL	115,082 European ancestry individuals	NA	4q23		rs28376611-G	0.745382	2E-8		0.025908	[0.017-0.035] unit increase	NR [11722792] (imputed)	N
1351	chr4	100504440	100504441	rs77010227	31151762	Gelernter J	2019-04-08	Biol Psychiatry	Genome-wide Association Study of Maximum Habitual Alcohol Intake in >140,000 U.S. European and African American Veterans Yields Novel Risk Loci.	Maximum habitual alcohol consumption	126,936 European ancestry individuals, 17,029 African American individuals	NA	4q23	NR	rs77010227-C	NR	7E-6	(AA)	0.239639	[0.14-0.34] unit decrease	Affymetrix [up to 6007810] (imputed)	N
1351	chr4	100508146	100508146	rs11463615	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol use disorder	57,564 European ancestry cases, 256,395 European ancestry controls	NA	4q23	NR	rs11463615-A	0.8866	6E-9		5.804	[NR] unit increase	Affymetrix [7003540] (imputed)	N
1351	chr4	100508555	100508556	rs2035816	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very small VLDL	115,082 European ancestry individuals	NA	4q23		rs2035816-A	0.915699	1E-8		0.0415749	[0.027-0.056] unit increase	NR [11722792] (imputed)	N
1351	chr4	100508555	100508556	rs2035816	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small VLDL	115,082 European ancestry individuals	NA	4q23		rs2035816-A	0.915699	1E-8		0.0409092	[0.027-0.055] unit increase	NR [11722792] (imputed)	N
1351	chr4	100508555	100508556	rs2035816	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium HDL	115,082 European ancestry individuals	NA	4q23		rs2035816-A	0.915699	2E-10		0.0464872	[0.032-0.061] unit increase	NR [11722792] (imputed)	N
1351	chr4	100508555	100508556	rs2035816	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in VLDL	115,082 European ancestry individuals	NA	4q23		rs2035816-A	0.915699	3E-8		0.0398346	[0.026-0.054] unit increase	NR [11722792] (imputed)	N
1351	chr4	100508555	100508556	rs2035816	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in HDL	115,082 European ancestry individuals	NA	4q23		rs2035816-A	0.915699	4E-9		0.0428509	[0.029-0.057] unit increase	NR [11722792] (imputed)	N
1351	chr4	100508555	100508556	rs2035816	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total triglycerides levels	115,082 European ancestry individuals	NA	4q23		rs2035816-A	0.915699	1E-8		0.040701	[0.027-0.055] unit increase	NR [11722792] (imputed)	N
1351	chr4	100508555	100508556	rs2035816	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	4q23		rs2035816-A	0.915698	3E-8		0.0395074	[0.025-0.054] unit decrease	NR [11722792] (imputed)	N
1351	chr4	100508555	100508556	rs2035816	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to monounsaturated fatty acids	115,006 European ancestry individuals	NA	4q23		rs2035816-A	0.915698	3E-8		0.0393916	[0.025-0.053] unit decrease	NR [11722792] (imputed)	N
1351	chr4	100508555	100508556	rs2035816	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	4q23		rs2035816-A	0.915699	2E-8		0.0402677	[0.026-0.054] unit increase	NR [11722792] (imputed)	N
1351	chr4	100508555	100508556	rs2035816	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Monounsaturated fatty acid levels	115,006 European ancestry individuals	NA	4q23		rs2035816-A	0.915698	2E-8		0.0412481	[0.027-0.056] unit increase	NR [11722792] (imputed)	N
1351	chr4	100508555	100508556	rs2035816	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	4q23		rs2035816-A	0.915699	1E-8		0.041107	[0.027-0.055] unit decrease	NR [11722792] (imputed)	N
1351	chr4	100508555	100508556	rs2035816	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	4q23		rs2035816-A	0.915699	1E-9		0.0433556	[0.029-0.057] unit decrease	NR [11722792] (imputed)	N
1351	chr4	100508555	100508556	rs2035816	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	4q23		rs2035816-A	0.915699	4E-8		0.0394449	[0.025-0.053] unit increase	NR [11722792] (imputed)	N
1351	chr4	100508555	100508556	rs2035816	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	4q23		rs2035816-A	0.915699	6E-10		0.0451057	[0.031-0.059] unit decrease	NR [11722792] (imputed)	N
1351	chr4	100508555	100508556	rs2035816	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	4q23		rs2035816-A	0.915699	3E-8		0.0399923	[0.026-0.054] unit decrease	NR [11722792] (imputed)	N
1351	chr4	100508555	100508556	rs2035816	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	4q23		rs2035816-A	0.915699	3E-11		0.0484833	[0.034-0.063] unit decrease	NR [11722792] (imputed)	N
1351	chr4	100508555	100508556	rs2035816	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	4q23		rs2035816-A	0.915699	3E-8		0.0395646	[0.026-0.054] unit increase	NR [11722792] (imputed)	N
1351	chr4	100508555	100508556	rs2035816	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	4q23		rs2035816-G	NR	8E-11		0.0274	[0.019-0.036] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
1351	chr4	100508555	100508556	rs2035816	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	4q23	MTTP	rs2035816-A	0.915914	6E-15		0.0280325	[0.021-0.035] unit increase	Affymetrix [NR] (imputed)	N
1351	chr4	100515942	100515943	rs1419664600	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Apolipoprotein A1 levels	398,508 European ancestry individuals	NA	4q23		rs1419664600-?	NR	2E-10		0.885989	[0.59-1.18] unit decrease	NR [9800000] (imputed)	N
1351	chr4	100517323	100517324	rs12509976	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	4q23	MTTP	rs12509976-T	0.0995	8E-13		0.0394	[0.029-0.05] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1352	chr4	100532601	100532602	rs113337987	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	4q23	NR	rs113337987-A	NR	2E-13		0.0624	[0.046-0.079] unit decrease	Affymetrix [9000000] (imputed)	N
1352	chr4	100532601	100532602	rs113337987	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	4q23	NR	rs113337987-A	NR	4E-9		0.052	[0.035-0.069] unit decrease	Affymetrix [9000000] (imputed)	N
1352	chr4	100532601	100532602	rs113337987	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	4q23	NR	rs113337987-A	NR	6E-15		0.066	[0.049-0.083] unit decrease	Affymetrix [9000000] (imputed)	N
1352	chr4	100532601	100532602	rs113337987	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	4q23	NR	rs113337987-A	NR	6E-10		0.0523	[0.036-0.069] unit decrease	Affymetrix [9000000] (imputed)	N
1352	chr4	100536362	100536363	rs7668586	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	4q23		rs7668586-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1352	chr4	100539895	100539896	rs1032355	23936387	Ostensson M	2013-08-02	PLoS One	A possible mechanism behind autoimmune disorders discovered by genome-wide linkage and association analysis in celiac disease.	Celiac disease	206 European ancestry trios	NA	4q23	RG9MTD2, C4orf17, MTTP	rs1032355-C		5E-6				Illumina [944512] (imputed)	N
1352	chr4	100551123	100551124	rs10516446	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	4q23		rs10516446-A	NR	7E-14		0.011	[0.0081-0.0139] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1352	chr4	100551123	100551124	rs10516446	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	4q23	RP11-766F14.1	rs10516446-A	NR	1E-10		0.0238793	[0.017-0.031] unit increase	Affymetrix [321016] (imputed)	N
1352	chr4	100551123	100551124	rs10516446	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	4q23		rs10516446-?	NR	8E-19				NR [~ 8900000] (imputed)	N
1352	chr4	100608798	100608799	rs150848708	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	4q23		rs150848708-A	NR	4E-12		0.1056	[0.076-0.135] unit decrease	Affymetrix, Illumina [20521447] (imputed)	N
1352	chr4	100621368	100621369	rs56289553	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	4q23	RP11-766F14.2	rs56289553-C	NR	4E-8		0.0221284	[0.014-0.03] unit increase	Affymetrix [321016] (imputed)	N
1352	chr4	100633356	100633357	rs1388295	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	4q23		rs1388295-C	0.033152	2E-9		0.038047694	[0.026-0.05] unit decrease	Affymetrix [93095623] (imputed)	N
1352	chr4	100658371	100658372	rs13116934	32693751	Keene KL	2020-07-22	Stroke	Genome-Wide Association Study Meta-Analysis of Stroke in 22 000 Individuals of African Descent Identifies Novel Associations With Stroke.	Stroke	3,734 African ancestry cases, 18,317 African ancestry controls	NA	4q23	DAPP1	rs13116934-A	NR	8E-7	(sample size weighted)	4.924	NR z score increase	Affymetrix, Illumina [~ 16900000] (imputed)	N
1353	chr4	100693587	100693588	rs6816436	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	4q23	NR	rs6816436-T	0.177	1E-6	(IFNalpha_STAT4_of_CD8p_T)			Illumina [5084123] (imputed)	N
1353	chr4	100705271	100705272	rs6831238	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	4q23	NR	rs6831238-C	0.272	3E-7	(IFNalpha_STAT1_of_CD56brightCD16n)			Illumina [5084123] (imputed)	N
1353	chr4	100713764	100713765	rs11735070	20195266	Adkins DE	2010-03-02	Mol Psychiatry	Genomewide pharmacogenomic study of metabolic side effects to antipsychotic drugs.	Response to antipsychotic treatment	421 European ancestry, 214 African American, and 103 cases	NA	4q23	intergenic	rs11735070-?	0.338	1E-6	(perphenazine-triglycerides)			Affymetrix [492900]	N
1353	chr4	100722461	100722462	rs34212041	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	4q23	intergenic	rs34212041-G	0.3675	7E-13		0.0141	[0.01-0.018] unit decrease	Affymetrix [18391927] (imputed)	N
1353	chr4	100755106	100755107	rs6813099	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q23	NR	rs6813099-C	0.781617	2E-11				Affymetrix, Illumina [22063850] (imputed)	N
1353	chr4	100760068	100760069	rs17029573	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	4q23	DAPP1	rs17029573-C	0.206623	4E-12		0.019009568	[0.014-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1353	chr4	100760068	100760069	rs17029573	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	4q23	NR	rs17029573-T	0.789376	1E-12		0.016469	[0.012-0.021] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
1353	chr4	100760164	100760165	rs62305038	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	4q23		rs62305038-?	NR	3E-11				NR [~ 8900000] (imputed)	N
1353	chr4	100769094	100769095	rs28679452	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q23	NR	rs28679452-T	0.478653	5E-13				Affymetrix, Illumina [24588908] (imputed)	N
1353	chr4	100769094	100769095	rs28679452	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	4q23	NR	rs28679452-T	0.466288	3E-15		0.014533	[0.011-0.018] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1354	chr4	100805206	100805207	rs6532835	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	4q23		rs6532835-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1354	chr4	100810352	100810355	rs34015134	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	4q23	LAMTOR3	rs34015134-T	0.213653	1E-9		0.016619109	[0.011-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1354	chr4	100832563	100832564	rs140280172	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	4q23		rs140280172-A	NR	2E-10		0.1105	[0.076-0.145] unit decrease	Affymetrix, Illumina [20536134] (imputed)	N
1354	chr4	100875739	100875740	rs11097683	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	4q23	RP11-15B17.1	rs11097683-G	0.282322	4E-9		0.014712953	[0.0098-0.0196] unit decrease	Affymetrix [93095623] (imputed)	N
1354	chr4	100875739	100875740	rs11097683	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	4q23	RP11-15B17.1	rs11097683-G	0.282069	1E-16		0.020616239	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1354	chr4	100885119	100885120	rs148382129	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Problematic alcohol use	435,563 European ancestry individuals	NA	4q23	NR	rs148382129-T	0.0075	3E-23		9.95	[NR] z score decrease	Affymetrix [14069427] (imputed)	N
1354	chr4	100885119	100885120	rs148382129	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol use disorder	57,564 European ancestry cases, 256,395 European ancestry controls	NA	4q23	NR	rs148382129-T	0.0079	6E-16		8.098	[NR] unit decrease	Affymetrix [7003540] (imputed)	N
1354	chr4	100919253	100919254	rs150021439	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Alcohol consumption (drinks per week)	up to 357,854 European ancestry individuals	NA	4q23	LOC256880	rs150021439-T	0.0044	1E-22		0.188	[0.15-0.23] unit decrease	Illumina [~ 250000] (imputed)	N
1355	chr4	100943868	100943869	rs11097685	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	4q23	RP11-15B17.1	rs11097685-T	0.231807	6E-12		0.018238537	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1355	chr4	100964672	100964672	rs58127077	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	4q23	NR	rs58127077-I	0.273532	1E-10		0.014903	[0.01-0.019] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1355	chr4	100973952	100973953	rs55888547	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	4q23	RP11-15B17.1	rs55888547-T	0.232023	1E-12		0.01881831	[0.014-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1355	chr4	100973952	100973953	rs55888547	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	4q23	RP11-15B17.1	rs55888547-T	0.231995	5E-10		0.01640371	[0.011-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1355	chr4	100973952	100973953	rs55888547	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	4q23	RP11-15B17.1	rs55888547-T	0.232005	5E-11		0.017379174	[0.012-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1355	chr4	101000986	101000987	rs12506869	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels	18,590 European ancestry individuals, 3,806 African American individuals, 774 Chinese ancestry individuals, 1,446 Hispanics ancestry individuals	NA	4q23		rs12506869-?	NR	2E-7		0.05	[0.032-0.068] unit decrease	Affymetrix, Illumina [10661418] (imputed)	N
1355	chr4	101000986	101000987	rs12506869	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels	18,590 European ancestry individuals	NA	4q23		rs12506869-?	NR	7E-6		0.04	[0.02-0.06] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1355	chr4	101005317	101005318	rs7697932	28598434	Scelo G	2017-06-09	Nat Commun	Genome-wide association study identifies multiple risk loci for renal cell carcinoma.	Renal cell carcinoma	10,784 European ancestry cases, 20,406 European ancestry controls	3,182 European ancestry cases, 6,301 European ancestry controls	4q23	NR	rs7697932-?	NR	7E-8		1.0962509	[1.06-1.13]	Illumina [7437091] (imputed)	N
1355	chr4	101014808	101014809	rs11935767	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Age at menopause	approximately 143,000 European ancestry individuals	NA	4q23		rs11935767-?	NR	1E-11				NR [~ 8900000] (imputed)	N
1356	chr4	101084990	101084991	rs62307576	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Alcohol consumption (drinks per week)	414,343 European ancestry individuals	NA	4q24	DDIT4L	rs62307576-A	0.0023	8E-12		0.15947579	[0.11-0.21] unit decrease	Affymetrix [11514936] (imputed)	N
1356	chr4	101109587	101109588	rs62307591	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	4q24		rs62307591-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1356	chr4	101114671	101114672	rs17621450	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota (bacterial taxa)	858 Metropolitan French ancestry individuals	NA	4q24	NR	rs17621450-?	NR	5E-8	(Butyricicoccus_pullicaecorum)	2.70115	[2.34-3.06]	Illumina [5293637] (imputed)	N
1356	chr4	101114671	101114672	rs17621450	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota (bacterial taxa)	858 Metropolitan French ancestry individuals	NA	4q24	NR	rs17621450-?	NR	5E-8	(Butyricicoccus)	2.70115	[2.34-3.06]	Illumina [5293637] (imputed)	N
1356	chr4	101121390	101121391	rs11097693	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	4q24	LOC101929353	rs11097693-A	0.5838	9E-10		0.019	[0.013-0.025] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1356	chr4	101121390	101121391	rs11097693	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	4q24	LOC101929353	rs11097693-A	0.6169	2E-7		0.020389	[0.013-0.028] mg/dL decrease	Affymetrix, Illumina [8217339] (imputed)	N
1356	chr4	101122680	101122681	rs28642089	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	4q24		rs28642089-G	NR	3E-10		0.0103	[0.0072-0.0134] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
1356	chr4	101122815	101122816	rs147399732	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	4q24	RP11-588P8.1	rs147399732-A	0.092206	2E-13		0.028315226	[0.021-0.036] unit increase	Affymetrix [93095623] (imputed)	N
1356	chr4	101124421	101124422	rs6851943	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Glomerular filtration rate	143,658 Japanese ancestry individuals	NA	4q24	LOC101929353	rs6851943-?	NR	6E-9		0.02199	[0.015-0.029] unit decrease novel	Illumina [6108953] (imputed)	N
1356	chr4	101124421	101124422	rs6851943	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Creatinine levels	142,097 Japanese ancestry individuals	NA	4q24	LOC101929353	rs6851943-?	NR	6E-9		0.02146	[0.014-0.029] unit increase novel	Illumina [6108953] (imputed)	N
1356	chr4	101130250	101130251	rs34601034	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	150,266 East Asian ancestry individuals	NA	4q24		rs34601034-A	0.455499	3E-9		0.0171248	[0.011-0.023] unit increase	Illumina [13478778] (imputed)	N
1356	chr4	101130715	101130716	rs6532852	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	4q24		rs6532852-A	NR	9E-10		0.0111	[0.0076-0.0146] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
1356	chr4	101131792	101131793	rs2866209	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	4q24	NR	rs2866209-T	0.875667	3E-10		0.018457	[0.013-0.024] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
1356	chr4	101132076	101132077	rs540584111	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Ischemic stroke (cardioembolic)	174 Indian ancestry cases, 2,154 Indian ancestry controls	NA	4q24		rs540584111-?	NR	3E-6		1.1721408	[1.0967650747198-1.25269694164198]	Illumina [up to 7827597] (imputed)	N
1356	chr4	101182766	101182767	rs188514326	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Alcohol consumption (drinks per week)	414,343 European ancestry individuals	NA	4q24	DDIT4L	rs188514326-C	0.0037	3E-23		0.18278082	[0.15-0.22] unit decrease	Affymetrix [11514936] (imputed)	N
1356	chr4	101182766	101182767	rs188514326	30336701	Sanchez-Roige S	2018-10-19	Am J Psychiatry	Genome-Wide Association Study Meta-Analysis of the Alcohol Use Disorders Identification Test (AUDIT) in Two Population-Based Cohorts.	Alcohol use disorder (total score)	141,932 European ancestry individuals	NA	4q24	RP11-588P8.1	rs188514326-C	NR	4E-8		5.49	[NR] z score decrease	NR [16213998]	N
1357	chr4	101196301	101196302	rs61705228	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-2 receptor antagonist levels	3,677 Finnish ancestry individuals	NA	4q24	NR	rs61705228-C		4E-6		0.3303	[0.19-0.47] SD units decrease	NR [10700000] (imputed)	N
1357	chr4	101218061	101218062	rs6851148	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Nose size	67,023 European ancestry individuals	NA	4q24	DDIT4L, EMCN	rs6851148-?	NR	3E-7		0.023	[0.032-0.014] unit decrease	Illumina [12039491] (imputed)	N
1357	chr4	101223312	101223313	rs58143459	34020725	Reddy JS	2021-05-21	Acta Neuropathol Commun	Genome-wide analysis identifies a novel LINC-PINT splice variant associated with vascular amyloid pathology in Alzheimer's disease.	Cerebral amyloid angiopathy x APOEe4 status interaction in Alzheimer's disease	534 European ancestry APOEe4 carriers, 287 European ancestry APOEe4 non-carriers	NA	4q24	LOC101929353	rs58143459-C	0.19	7E-7				Illumina [1679420] (imputed)	N
1357	chr4	101223312	101223313	rs58143459	34020725	Reddy JS	2021-05-21	Acta Neuropathol Commun	Genome-wide analysis identifies a novel LINC-PINT splice variant associated with vascular amyloid pathology in Alzheimer's disease.	Cerebral amyloid angiopathy in APOEe4 non-carrier Alzheimer's disease	287 European ancestry individuals	NA	4q24	LOC101929353	rs58143459-C	0.19	4E-6		0.23	[0.13-0.33] unit increase	Illumina [1679420] (imputed)	N
1357	chr4	101232140	101232141	rs72690322	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 18)	2,187 European ancestry individuals	NA	4q24	NR	rs72690322-C	0.1667	4E-6		0.1895	[0.11-0.27] unit increase	Illumina [10677593] (imputed)	N
1357	chr4	101243022	101243023	rs4699791	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week)	up to 941,280 European ancestry individuals	NA	4q24	NR	rs4699791-A	0.095726	7E-14	(Conditioned on chr4:100000136, chr4:100254520,chr4:100443853 ,chr4:100286085, chr4:100260679, chr4:100444363, chr4:100239319)	0.018570721	[0.014-0.023] unit increase	NR [~ 10000000] (imputed)	N
1357	chr4	101251147	101251148	rs76577441	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	UBA8621 abundance in stool	5,959 Finnish ancestry individuals	NA	4q24		rs76577441-C	0.0467905	3E-8		0.068942	[0.045-0.093] unit increase	Illumina [7980478] (imputed)	N
1358	chr4	101348215	101348216	rs78658424	34779240	Cheng B	2021-11-01	Bone Joint Res	Gut microbiota is associated with bone mineral density : an observational and genome-wide environmental interaction analysis in the UK Biobank cohort.	Total bone mineral density x gut microbiota (genus Dialister) interaction	2,293 European ancestry individuals	NA	4q24		rs78658424-A	NR	2E-9		0.587	[0.4-0.78] unit increase	Affymetrix [509886] (imputed)	N
1358	chr4	101426731	101426732	rs34619498	30166627	Massey J	2018-08-31	Pharmacogenomics J	Genome-wide association study of response to tumour necrosis factor inhibitor therapy in rheumatoid arthritis.	Response to TNF inhibitor in rheumatoid arthritis (change in swollen 28-joint count)	551 European ancestry individuals treated with adalimumab, 619 European ancestry individuals treated with etanercept, 434 European ancestry individuals treated with infliximab, 119 European ancestry individuals treated with other TNF inhibitors	NA	4q24	EMCN	rs34619498-?		8E-8	(Adalimumab)	0.64	[0.4-0.88] unit decrease	Affymetrix, Illumina [9814288] (imputed)	N
1358	chr4	101436200	101436201	rs1318710	25710614	Hong X	2015-02-24	Nat Commun	Genome-wide association study identifies peanut allergy-specific loci and evidence of epigenetic mediation in US children.	Food allergy	671 European ancestry child cases, 144 European ancestry non-allergic non-sensitized child controls, 234 European ancestry uncertain phenotype child controls, 1,148 European ancestry uncertain phenotype adult controls	NA	4q24	EMCN	rs1318710-?	NR	3E-6				Illumina [6459842] (imputed)	N
1359	chr4	101460675	101460676	rs1501086	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Intraocular pressure	101,939 European ancestry cases	NA	4q24	NR	rs1501086-T		3E-10		0.13	[0.091-0.169] unit increase	NR [NR]	N
1359	chr4	101460675	101460676	rs1501086	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Intraocular pressure	133,492 European ancestry individuals	NA	4q24	EMCN	rs1501086-?	NR	2E-10		0.1136	[0.079-0.148] unit decrease	Affymetrix, Illumina [up to 40000000] (imputed)	N
1359	chr4	101460675	101460676	rs1501086	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	4q24	EMCN	rs1501086-T	0.849	5E-9		0.104	[0.069-0.139] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1359	chr4	101478309	101478310	rs182626075	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	4q24	EMCN	rs182626075-T	0.0056	9E-6		0.2685	[0.15-0.39] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1359	chr4	101499049	101499050	rs142151894	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Problematic alcohol use	435,563 European ancestry individuals	NA	4q24	NR	rs142151894-C	0.0032	3E-11		6.642	[NR] z score decrease	Affymetrix [14069427] (imputed)	N
1359	chr4	101540304	101540305	rs2866220	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Tenofovir clearance in HIV infection	243 European ancestry cases, 149 African American cases, 100 Hispanic American cases, 9 unknown ancestry cases	NA	4q24	NR	rs2866220-?		3E-6	(EA)			Illumina [~ 5190000] (imputed)	N
1359	chr4	101541601	101541602	rs12505444	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Tenofovir clearance in HIV infection	243 European ancestry cases, 149 African American cases, 100 Hispanic American cases, 9 unknown ancestry cases	NA	4q24	NR	rs12505444-?		3E-6	(EA)			Illumina [~ 5190000] (imputed)	N
1359	chr4	101542426	101542427	rs4493542	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Tenofovir clearance in HIV infection	243 European ancestry cases, 149 African American cases, 100 Hispanic American cases, 9 unknown ancestry cases	NA	4q24	NR	rs4493542-?		3E-6	(EA)			Illumina [~ 5190000] (imputed)	N
1359	chr4	101551314	101551315	rs4401457	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Tenofovir clearance in HIV infection	243 European ancestry cases, 149 African American cases, 100 Hispanic American cases, 9 unknown ancestry cases	NA	4q24	NR	rs4401457-?		5E-6	(EA)			Illumina [~ 5190000] (imputed)	N
1359	chr4	101553899	101553900	rs4417977	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Tenofovir clearance in HIV infection	243 European ancestry cases, 149 African American cases, 100 Hispanic American cases, 9 unknown ancestry cases	NA	4q24	NR	rs4417977-?		3E-6	(EA)			Illumina [~ 5190000] (imputed)	N
1359	chr4	101555044	101555045	rs4635820	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Tenofovir clearance in HIV infection	243 European ancestry cases, 149 African American cases, 100 Hispanic American cases, 9 unknown ancestry cases	NA	4q24	NR	rs4635820-?		3E-6	(EA)			Illumina [~ 5190000] (imputed)	N
1359	chr4	101555175	101555176	rs6532889	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Tenofovir clearance in HIV infection	243 European ancestry cases, 149 African American cases, 100 Hispanic American cases, 9 unknown ancestry cases	NA	4q24	NR	rs6532889-?		3E-6	(EA)			Illumina [~ 5190000] (imputed)	N
1359	chr4	101555769	101555770	rs4334765	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Tenofovir clearance in HIV infection	243 European ancestry cases, 149 African American cases, 100 Hispanic American cases, 9 unknown ancestry cases	NA	4q24	NR	rs4334765-?		3E-6	(EA)			Illumina [~ 5190000] (imputed)	N
1359	chr4	101562856	101562857	rs2903216	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Tenofovir clearance in HIV infection	243 European ancestry cases, 149 African American cases, 100 Hispanic American cases, 9 unknown ancestry cases	NA	4q24	NR	rs2903216-?		3E-6	(EA)			Illumina [~ 5190000] (imputed)	N
1359	chr4	101568955	101568956	rs10025419	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Tenofovir clearance in HIV infection	243 European ancestry cases, 149 African American cases, 100 Hispanic American cases, 9 unknown ancestry cases	NA	4q24	NR	rs10025419-?		1E-6	(EA)			Illumina [~ 5190000] (imputed)	N
1359	chr4	101570600	101570601	rs2866233	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Tenofovir clearance in HIV infection	243 European ancestry cases, 149 African American cases, 100 Hispanic American cases, 9 unknown ancestry cases	NA	4q24	NR	rs2866233-?		1E-6	(EA)			Illumina [~ 5190000] (imputed)	N
1360	chr4	101627781	101627782	rs7691456	31005965	Coltell O	2019-04-21	Am J Clin Nutr	Association between taste perception and adiposity in overweight or obese older subjects with metabolic syndrome and identification of novel taste-related genes.	Umami taste perception in obesity with metabolic syndrome	378 individuals	NA	4q24	intergenic	rs7691456-T	0.398	8E-6		0.455	[0.26-0.65] unit increase	Illumina [622468]	N
1360	chr4	101644203	101644204	rs9995730	31005965	Coltell O	2019-04-21	Am J Clin Nutr	Association between taste perception and adiposity in overweight or obese older subjects with metabolic syndrome and identification of novel taste-related genes.	Taste perception (total score including phenylthiocarbamide) in obesity with metabolic syndrome	369 individuals	NA	4q24	intergenic	rs9995730-A	0.331	9E-6	(adjusted for sex and age)	1.438	[0.8-2.08] unit decrease	Illumina [622468]	N
1361	chr4	101727885	101727886	rs115291593	27846281	Galesloot TE	2016-11-15	PLoS One	Meta-GWAS and Meta-Analysis of Exome Array Studies Do Not Reveal Genetic Determinants of Serum Hepcidin.	Hepcidin/ferritin ratio	1495 European ancestry individuals without iron deficiency or clinical inflammation, 324 European ancestry individuals, 1206 Val Borbera (founder/genetic isolated) individuals without iron deficiency or clinical inflammation, 274 Val Borbera (founder/genetic isolated) individuals, 2,695 European ancestry individuals without iron deficiency or clinical inflammation, 207 individuals	NA	4q24	LINC01216	rs115291593-T	0.0268	7E-6		0.2747	[0.15-0.39] unit increase	Illumina [up to 38043574] (imputed)	N
1361	chr4	101750652	101750653	rs13122395	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	4q24	NR	rs13122395-A	NR	4E-8		0.01356	[0.0087-0.0184] unit increase	Affymetrix [10847151] (imputed)	N
1361	chr4	101806531	101806532	rs13107740	22566498	Turner ST	2012-05-07	Hypertension	Genomic association analysis identifies multiple loci influencing antihypertensive response to an angiotensin II receptor blocker.	Response to angiotensin II receptor blocker therapy	198 European ancestry hypertensive individuals, 193 African American hypertensive individuals	NA	4q24	EMCN	rs13107740-G	NR	5E-6	(AA)	1.51	[0.78-2.24] unit decrease	Affymetrix [~ 2300000] (imputed)	N
1362	chr4	101901409	101901410	rs72927357	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Ejection fraction in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	4q24	NR	rs72927357-?	NR	9E-6				Affymetrix [5486770] (imputed)	N
1362	chr4	101931825	101931826	rs1405687	20195266	Adkins DE	2010-03-02	Mol Psychiatry	Genomewide pharmacogenomic study of metabolic side effects to antipsychotic drugs.	Response to antipsychotic treatment	421 European ancestry, 214 African American, and 103 cases	NA	4q24	intergenic	rs1405687-?	0.088	5E-8	(ziprasidone-hip circumference)			Affymetrix [492900]	N
1363	chr4	101995170	101995171	rs114133701	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q24	NR	rs114133701-T	0.01045	2E-9	(BPNT1)	0.05353	NR unit increase	Illumina [1671387] (imputed)	N
1363	chr4	102037718	102037719	rs2659546	21979947	Li X	2011-10-06	Hum Mol Genet	A genome-wide association study identifies a potential novel gene locus for keratoconus, one of the commonest causes for corneal transplantation in developed countries.	Corneal structure	222 European ancestry cases, 3,324 European ancestry controls	304 European ancestry cases, 518 European ancestry controls, 146 European ancestry cases and 161 European ancestry controls from 70 families	4q24	PPP3CA	rs2659546-?	NR	4E-6		1.63		Illumina [~ 290000]	N
1363	chr4	102048075	102048076	rs17030795	24514567	Boraska V	2014-02-11	Mol Psychiatry	A genome-wide association study of anorexia nervosa.	Anorexia nervosa	2,907 European ancestry cases, 14,860 European ancestry controls	2,677 European ancestry cases, 8,629 European ancestry controls, 458 Japanese ancestry cases, 421 Japanese ancestry controls	4q24	PPP3CA	rs17030795-G	0.192	6E-6		1.149	[1.082-1.220]	Illumina [1185559] (imputed)	N
1363	chr4	102079675	102079676	rs2695213	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter non-alcoholic beverage consumption	85,852 European ancestry individuals	39,924 European ancestry individuals	4q24	PPP3CA	rs2695213-G	0.7486	2E-6		0.0088	[0.0051-0.0125] unit increase	Affymetrix [~ 7740000] (imputed)	N
1363	chr4	102083200	102083201	rs3017892	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	4q24		rs3017892-A	NR	8E-9		0.0113	[0.0074-0.0152] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1363	chr4	102083200	102083201	rs3017892	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	4q24		rs3017892-A	NR	1E-9		0.0121	[0.0082-0.016] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
1363	chr4	102083200	102083201	rs3017892	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	4q24		rs3017892-A	NR	3E-10		0.013	[0.0089-0.0171] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1363	chr4	102094763	102094764	rs2850979	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	4q24	PPP3CA	rs2850979-C	0.23970000000000002	3E-9		1.0236759		Affymetrix [11880941] (imputed)	N
1364	chr4	102131677	102131678	rs13130412	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	4q24	NR	rs13130412-?	NR	5E-8				Affymetrix [~ 8270000] (imputed)	N
1364	chr4	102149547	102149548	rs6819434	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Trunk fat mass	3,399 whole genome sequenced individuals, 12,838 European ancestry individuals	10,667 European ancestry individuals	4q24	PPP3CA	rs6819434-T	0.9942	6E-6		0.4116	[0.23-0.59] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1364	chr4	102167931	102167932	rs573407928	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris color (b* coordinate)	329 South Asian ancestry individuals		4q24	intergenic	rs573407928-G	0.023	4E-6		1.207	[0.7-1.71] unit increase	Illumina [640625] (imputed)	N
1364	chr4	102182198	102182199	rs2583410	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		4q24	PPP3CA	rs2583410-A	0.853006	5E-12		0.0133529	[0.0096-0.0171] unit decrease	Affymetrix [12370749]	N
1364	chr4	102182198	102182199	rs2583410	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	4q24		rs2583410-?	NR	1E-12				NR [~ 8900000] (imputed)	N
1364	chr4	102199214	102199215	rs13116679	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	4q24		rs13116679-A	0.7366	3E-13		0.11245069	[0.082-0.143] mmHg increase	Affymetrix, Illumina [242866] (imputed)	N
1364	chr4	102209359	102209360	rs1441433	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals, 21,077 African American individuals, 33,689 South Asian ancestry individuals, 4,586 Hispanic individuals	354,096 European ancestry individuals, 63,282 African American individuals, 4,792 East Asian ancestry individuals, 22,802 Hispanic individuals, 2,695 Native American ancestry individuals	4q24		rs1441433-T	0.8424	4E-9		0.16877843	[0.11-0.23] mmHg increase	Affymetrix, Illumina [247314] (imputed)	N
1364	chr4	102218714	102218715	rs920559	34187846	Ong JS	2021-06-29	Gut	Multitrait genetic association analysis identifies 50 new risk loci for gastro-oesophageal reflux, seven new loci for Barrett's oesophagus and provides insights into clinical heterogeneity in reflux diagnosis.	Gastroesophageal reflux disease	129,080 European ancestry cases, 473,524 European ancestry controls	462,753 cases, 1,127,474 controls	4q24	FLJ20021	rs920559-C	0.85	2E-8		0.038	unit decrease	NR [2324712] (imputed)	N
1364	chr4	102223385	102223386	rs1031034	27723757	Jin Y	2016-11-01	Nat Genet	Genome-wide association studies of autoimmune vitiligo identify 23 new risk loci and highlight key pathways and regulatory variants.	Vitiligo	2,853 European ancestry cases and 37,405 European ancestry controls	1,827 European ancestry cases and 2,181 European ancestry controls	4q24	PPP3CA	rs1031034-C	0.7236	3E-8		1.1645511	[1.1-1.23]	Illumina [8966411] (imputed)	N
1364	chr4	102232628	102232629	rs2850368	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	4q24	NR	rs2850368-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
1365	chr4	102276681	102276682	rs6845263	26105758	Adhikari K	2015-06-24	Nat Commun	A genome-wide association study identifies multiple loci for variation in human ear morphology.	Superior crus of antihelix expression	4,919 Latin American individuals	NA	4q24	NR	rs6845263-?	NR	8E-7	(FDR adjusted)			Illumina [671038]	N
1365	chr4	102350496	102350497	rs553205008	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	4q24	NR	rs553205008-?	NR	2E-6		0.0078587	[0.0046-0.0111] unit increase	Affymetrix [805426] (imputed)	N
1365	chr4	102366528	102366529	rs4586943	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	4q24	NR	rs4586943-A	0.28211200000000003	7E-9		0.0184078	[0.012-0.025] unit increase	Affymetrix [16580851] (imputed)	N
1366	chr4	102386633	102386634	rs149496329	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	4q24	NR	rs149496329-?	NR	3E-11				Affymetrix [~ 8270000] (imputed)	N
1366	chr4	102402214	102402215	rs6846071	22788528	Kong M	2012-07-13	Int J Immunogenet	Genetic associations with C-reactive protein level and white blood cell count in the KARE study.	C-reactive protein and white blood cell count	8,722 individuals	NA	4q24	intergenic	rs6846071-G	0.016	1E-11	(CRP)	0.224	[NR] mg/dl increase	Affymetrix [1701735] (imputed)	N
1366	chr4	102432701	102432702	rs890448	24236485	Cornejo-Garcia JA	2013-11-01	Pharmacogenomics	Genome-wide association study in NSAID-induced acute urticaria/angioedema in Spanish and Han Chinese populations.	Acute urticaria and angioedema (non-steroidal anti-inflammatory drug-induced)	112 European ancestry cases, 124 European ancestry controls, 120 Han Chinese ancestry cases, 101 Han Chinese ancestry controls	NA	4q24	NR	rs890448-?		8E-6				Affymetrix [up to 644046]	N
1366	chr4	102435264	102435265	rs17248480	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	4q24	BANK1	rs17248480-A	0.0289	2E-16		0.7327	[0.56-0.91] mmHg decrease	Affymetrix [NR] (imputed)	N
1366	chr4	102435264	102435265	rs17248480	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	4q24	BANK1	rs17248480-A	0.0286	4E-26		0.5064	[0.41-0.6] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1366	chr4	102456329	102456330	rs76062146	31998841	Thompson A	2020-01-15	Sci Adv	Functional validity, role, and implications of heavy alcohol consumption genetic loci.	Alcohol consumption (heavy vs. light/non-drinkers)	21,967 British ancestry cases, 103,282 British ancestry controls	47,967 European ancestry individuals	4q24	BANK1	rs76062146-G	0.972	2E-7		5.193	NR z score increase	Affymetrix [11141077] (imputed)	N
1367	chr4	102507113	102507114	rs17249398	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	4q24	NR	rs17249398-?	NR	3E-6		4.682	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1367	chr4	102507113	102507114	rs17249398	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	4q24	BANK1	rs17249398-A	0.0272	1E-8		0.005	[0.0032-0.0068] unit decrease	Affymetrix [15275733] (imputed)	N
1367	chr4	102533124	102533125	rs147831935	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Spatial memory	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	4q24	intergenic	rs147831935-C	NR	7E-7		0.58450955	[0.35-0.82] unit decrease	Illumina [> 6200000] (imputed)	N
1367	chr4	102551569	102551570	rs17249850	33654092	Shigemizu D	2021-03-03	Transl Psychiatry	Ethnic and trans-ethnic genome-wide association studies identify new loci influencing Japanese Alzheimer's disease risk.	Alzheimer's disease	3,962 Japanese ancestry cases, 4,074 Japanese ancestry controls	1,216 Japanese ancestry cases, 2,446 Japanese ancestry controls	4q24	BANK1	rs17249850-T	0.016	4E-6		0.55	[0.42-0.71]	Affymetrix [4852957] (imputed)	N
1367	chr4	102560289	102560290	rs17031508	22763476	Zhang D	2012-07-05	Hypertens Res	Genome-wide linkage and association scans for pulse pressure in Chinese twins.	Blood pressure	63 Chinese ancestry dizygotic twin pairs	NA	4q24	PPP3CA, BANK1	rs17031508-?	NR	8E-8				Affymetrix [~ 900000]	N
1367	chr4	102589282	102589283	rs7700191	23453885	Smoller JW	2013-02-27	Lancet	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NA	4q24	BANK1	rs7700191-A		4E-6	(Modelling analysis)	1.12	[1.06-1.17]	NR [1252901] (imputed)	N
1368	chr4	102643915	102643916	rs142224718	33852427	Wittekind DA	2021-04-01	Eur J Endocrinol	Genome-wide association and transcriptome analysis suggests total serum ghrelin to be linked with GFRAL.	ghrelin levels	1,501 individuals	NA	4q24	BANK1	rs142224718-C	NR	1E-6		0.37	[0.23-0.53] unit decrease	Affymetrix [9868623] (imputed)	N
1368	chr4	102666784	102666785	rs12511373	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	4q24	NR	rs12511373-?	NR	3E-11				Affymetrix [~ 8270000] (imputed)	N
1368	chr4	102681040	102681041	rs201081507	33830993	Johnston KJA	2021-04-08	PLoS Genet	Sex-stratified genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	387,649 British ancestry individuals	NA	4q24	BANK1	rs201081507-?	NR	9E-9			[NR]	NR [NR] (imputed)	N
1368	chr4	102692474	102692475	rs72917071	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Bacteroides eggerthii abundance in stool	5,959 Finnish ancestry individuals	NA	4q24		rs72917071-G	0.0865237	2E-8		0.213877	[0.14-0.29] unit increase	Illumina [7980478] (imputed)	N
1368	chr4	102707790	102707791	rs17199964	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	4q24	NR	rs17199964-?	NR	5E-9	(right accumbens area)			NR [9227495] (imputed)	N
1368	chr4	102707790	102707791	rs17199964	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	4q24	NR	rs17199964-?	NR	3E-11	(left accumbens area)			NR [9227495] (imputed)	N
1368	chr4	102707790	102707791	rs17199964	30289880	Qi G	2018-10-05	PLoS Genet	Heritability informed power optimization (HIPO) leads to enhanced detection of genetic associations across multiple traits.	Lipid traits (pleiotropy) (HIPO component 1)	188,577 European ancestry individuals	NA	4q24	BANK1	rs17199964-?	NR	3E-8				NR [1800000]	N
1368	chr4	102707790	102707791	rs17199964	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	4q24	NR	rs17199964-A	NR	7E-12		6.864	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1368	chr4	102707790	102707791	rs17199964	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	4q24	BANK1	rs17199964-A	NR	2E-9		5.964	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1368	chr4	102707790	102707791	rs17199964	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	4q24	BANK1	rs17199964-A	NR	2E-9		0.03383534	[0.023-0.045] unit decrease	Affymetrix [NR]	N
1368	chr4	102708996	102708997	rs7377083	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	4q24		rs7377083-A	NR	5E-13		0.0127	[0.0092-0.0162] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1368	chr4	102708996	102708997	rs7377083	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	4q24	BANK1	rs7377083-C	0.568979	5E-22		0.0137436	[0.011-0.017] unit decrease	Affymetrix [12370749]	N
1368	chr4	102708996	102708997	rs7377083	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	4q24	NR	rs7377083-?	NR	2E-27				Affymetrix [~ 8270000] (imputed)	N
1368	chr4	102709307	102709308	rs11097755	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	4q24	NR	rs11097755-C	NR	8E-10		0.0154	[0.011-0.02] unit decrease	Affymetrix [9000000] (imputed)	N
1368	chr4	102715887	102715888	rs4522865	23273568	Yang W	2012-12-27	Am J Hum Genet	Meta-analysis followed by replication identifies loci in or near CDKN1B, TET3, CD80, DRAM1, and ARID5B as associated with systemic lupus erythematosus in Asians.	Systemic lupus erythematosus	1,656 Han Chinese ancestry cases, 3,394 Han Chinese ancestry controls	3,256 Han Chinese ancestry cases, 5,667 Han Chinese ancestry controls, 453 Thai ancestry cases, 963 Thai ancestry controls	4q24	BANK1	rs4522865-A	0.54	5E-6		1.3514		Illumina [2100739] (imputed)	N
1368	chr4	102721808	102721809	rs17266357	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	4q24	BANK1	rs17266357-C	0.3099298	9E-16	(EA, Calcineurin)	0.3681	[0.28-0.46] unit increase	Affymetrix [509946]	N
1368	chr4	102722392	102722393	rs4699259	34127828	Bolin K	2021-06-14	Genes Immun	Variants in BANK1 are associated with lupus nephritis of European ancestry.	Lupus nephritis in systemic lupus erythematosus	377 European ancestry cases, 714 European ancestry controls	570 Europen ancestry cases, 1,225 European ancestry controls		BANK1	rs4699259-A	0.3	2E-7		0.66	[0.54-0.81]	Illumina [112815]	N
1368	chr4	102737249	102737250	rs10028805	26956414	Berndt SI	2016-03-09	Nat Commun	Meta-analysis of genome-wide association studies discovers multiple loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	3,100 European ancestry cases, 7,667 European ancestry controls	1,958 cases,  5,530 controls	4q24	BANK1	rs10028805-G	0.624	7E-8		1.16	[1.10-1.22]	Affymetrix, Illumina [~ 8500000] (imputed)	N
1368	chr4	102737249	102737250	rs10028805	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	2,018 European ancestry cases, 6,925 European ancestry controls	4q24	BANK1	rs10028805-G		4E-17		1.2	[1.15-1.25]	Illumina [644674]	N
1368	chr4	102739979	102739980	rs13107612	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	4q24	BANK1	rs13107612-?	NR	3E-10	(subset analysis)			Illumina [130052]	N
1368	chr4	102741001	102741002	rs71597109	28165464	Law PJ	2017-02-06	Nat Commun	Genome-wide association analysis implicates dysregulation of immunity genes in chronic lymphocytic leukaemia.	Chronic lymphocytic leukemia	4,478 European ancestry cases and 13,213 European ancestry controls.	1,722 European ancestry cases and 4,385 European ancestry controls.	4q24	BANK1	rs71597109-C	0.69	1E-10		1.17	[1.11-1.22]	Affymetrix, Illumina [> 10000000] (imputed)	N
1368	chr4	102750921	102750922	rs17266594	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	4q24	BANK1	rs17266594-?	NR	5E-7	(AA)	1.2658228	[1.15-1.39]	Illumina [at least 5000000] (imputed)	N
1368	chr4	102751075	102751076	rs10516487	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	NA	4q24	BANK1	rs10516487-G		8E-8		1.16	[NR]	Illumina [> 644674] (imputed)	N
1368	chr4	102751075	102751076	rs10516487	18204447	Kozyrev SV	2008-01-20	Nat Genet	Functional variants in the B-cell gene BANK1 are associated with systemic lupus erythematosus.	Systemic lupus erythematosus	279 European ancestry cases, 515 European ancestry controls	1,757 European ancestry cases, 1,540 European ancestry controls	4q24	BANK1	rs10516487-G	0.77	4E-10		1.38	[1.25-1.53]	Affymetrix [85042]	N
1368	chr4	102753407	102753408	rs4637409	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	4q24	BANK1	rs4637409-?	NR	1E-17		1.1904762	[1.15-1.25]	Illumina [at least 5000000] (imputed)	N
1368	chr4	102756098	102756099	rs4643809	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	4q24	BANK1	rs4643809-T	0.305	4E-24		0.846	[0.81-0.88]	Illumina [11270530] (imputed)	N
1369	chr4	102763545	102763546	rs11947954	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	4q24	SLC39A8	rs11947954-?	NR	6E-7	(lysine)	2.722168	[1.66-3.79] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1369	chr4	102780723	102780724	rs4426778	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls	NA	4q24	BANK1	rs4426778-?	NR	1E-12		1.2658228	[1.19-1.35]	Illumina [at least 5000000] (imputed)	N
1369	chr4	102799071	102799072	rs7679882	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	4q24	BANK1	rs7679882-G	0.399679	4E-45		0.03237967	[0.028-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
1369	chr4	102799071	102799072	rs7679882	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q24	NR	rs7679882-C	0.596178	1E-52				Affymetrix, Illumina [17210439] (imputed)	N
1369	chr4	102799071	102799072	rs7679882	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	4q24	NR	rs7679882-C	0.600721	6E-55		0.030546	[0.027-0.034] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1369	chr4	102800148	102800148	rs34061204	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	4q24	BANK1	rs34061204-CA	0.3999	2E-15		0.02941898	[0.022-0.037] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1369	chr4	102801940	102801941	rs4698839	35023831	Chong M	2022-01-13	Elife	GWAS and ExWAS of blood Mitochondrial DNA copy number identifies 71 loci and highlights a potential causal role in dementia.	Mitochondrial DNA copy number	395,718 British, Irish, Other White, South Asian, African ancestry individuals	NA	4q24	NR	rs4698839-T	0.445088	9E-9		0.0124	[0.0081-0.0167] unit increase	Affymetrix [23037915] (imputed)	N
1369	chr4	102841604	102841605	rs13119516	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	4q24	NR	rs13119516-A	NR	5E-6		1.07	[NR]	Illumina [7158791] (imputed)	N
1369	chr4	102865303	102865304	rs13126505	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	4q24	NR	rs13126505-G	0.0616302	3E-16		0.107319176	[0.082-0.133] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1369	chr4	102865303	102865304	rs13126505	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	4q24	NR	rs13126505-A	NR	6E-16		8.086	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1369	chr4	102865303	102865304	rs13126505	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	4q24	NFKB1, SLC39A8, BANK1	rs13126505-?		4E-6				Illumina [9725440] (imputed)	N
1369	chr4	102865303	102865304	rs13126505	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	4q24	NFKB1, SLC39A8, BANK1	rs13126505-?		4E-8				Illumina [9560910] (imputed)	N
1369	chr4	102865303	102865304	rs13126505	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	4q24	NR	rs13126505-A	0.06306	1E-10	(EA)	1.1371485	[1.1-1.18]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1369	chr4	102865303	102865304	rs13126505	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Crohn's disease	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls	4q24	intergenic	rs13126505-A	0.096	2E-12		1.172	[1.10-1.248]	Affymetrix, Illumina [1230000] (imputed)	N
1370	chr4	102894288	102894289	rs62322696	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	4q24	BANK1	rs62322696-A	0.45	2E-8		0.010908743	[0.0071-0.0147] unit increase	Illumina [9339358] (imputed)	N
1370	chr4	102896590	102896591	rs13109404	33830993	Johnston KJA	2021-04-08	PLoS Genet	Sex-stratified genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	387,649 British ancestry individuals	NA	4q24	BANK1	rs13109404-?	NR	1E-9			[NR]	NR [NR] (imputed)	N
1370	chr4	102896590	102896591	rs13109404	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Pappalysin-1 levels	21,758 European ancestry individuals	9,173 individuals	4q24		rs13109404-T	0.94	4E-11		0.1387	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1370	chr4	102896590	102896591	rs13109404	30846698	Dashti HS	2019-03-07	Nat Commun	Genome-wide association study identifies genetic loci for self-reported habitual sleep duration supported by accelerometer-derived estimates.	Sleep duration	446,118 European ancestry individuals	47,180  adults, 10,554 children or adolescents	4q24	NR	rs13109404-T	NR	9E-11		1.716	unit increase	Affymetrix [14661600] (imputed)	N
1370	chr4	102896590	102896591	rs13109404	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Sleep duration	384,317 European ancestry individuals	NA	4q24		rs13109404-G	0.07041	1E-11		0.03256	[0.023-0.042] unit decrease	Affymetrix, Illumina [10862567] (imputed)	N
1370	chr4	102901821	102901822	rs60500975	27723756	Wang J	2016-10-10	Nat Genet	Genome-wide association analysis identifies variation in vitamin D receptor and other host factors influencing the gut microbiota.	Gut microbiota (beta diversity)	1,812 European ancestry individuals	371 European ancestry individuals	4q24	BANK1	rs60500975-?	NR	5E-8		0.82	NR percent increase	Affymetrix, Illumina [6344846] (imputed)	N
1370	chr4	102921703	102921704	rs13127398	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	4q24		rs13127398-?	NR	7E-16				NR [~ 8900000] (imputed)	N
1370	chr4	102926922	102926923	rs34592089	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	4q24	NR	rs34592089-A	NR	1E-10		0.0325	[0.023-0.042] unit decrease	Affymetrix [9000000] (imputed)	N
1370	chr4	102926922	102926923	rs34592089	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	4q24	NR	rs34592089-A	NR	2E-23		0.0502	[0.04-0.06] unit decrease	Affymetrix [9000000] (imputed)	N
1370	chr4	102926922	102926923	rs34592089	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	4q24	NR	rs34592089-A	NR	2E-24		0.0535	[0.043-0.064] unit decrease	Affymetrix [9000000] (imputed)	N
1370	chr4	102926922	102926923	rs34592089	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	4q24	NR	rs34592089-A	NR	4E-9		0.0295	[0.02-0.039] unit decrease	Affymetrix [9000000] (imputed)	N
1370	chr4	102926922	102926923	rs34592089	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	4q24	NR	rs34592089-A	NR	3E-51		0.0791	[0.069-0.089] unit decrease	Affymetrix [9000000] (imputed)	N
1370	chr4	102926922	102926923	rs34592089	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	4q24	NR	rs34592089-A	NR	6E-30		0.0598	[0.049-0.07] unit decrease	Affymetrix [9000000] (imputed)	N
1370	chr4	102926922	102926923	rs34592089	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	4q24	NR	rs34592089-A	NR	3E-27		0.0545	[0.045-0.064] unit increase	Affymetrix [9000000] (imputed)	N
1370	chr4	102926922	102926923	rs34592089	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	4q24	NR	rs34592089-A	NR	2E-41		0.0709	[0.061-0.081] unit decrease	Affymetrix [9000000] (imputed)	N
1370	chr4	102926922	102926923	rs34592089	31879980	German CA	2019-12-26	Genet Epidemiol	Ordered multinomial regression for genetic association analysis of ordinal phenotypes at Biobank scale.	Hypertension	30,822 British ancestry normal blood pressure individuals, 25,242 British ancestry elevated blood pressure individuals, 50,461 British ancestry stage 1 hypertension individuals, 75,286 British ancestry stage 2 hypertension individuals, 3,754 British ancestry hypertension crisis individuals	NA	4q24	BANK1	rs34592089-?	NR	1E-9		0.07719143	NR unit increase	Affymetrix [464137]	N
1370	chr4	102926922	102926923	rs34592089	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	4q24	NR	rs34592089-?	NR	7E-10	(right accumbens area)			NR [9227495] (imputed)	N
1370	chr4	102926922	102926923	rs34592089	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	4q24	NR	rs34592089-?	NR	3E-8	(white matter)			NR [9227495] (imputed)	N
1370	chr4	102926922	102926923	rs34592089	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	4q24	NR	rs34592089-?	NR	3E-13	(left accumbens area)			NR [9227495] (imputed)	N
1370	chr4	102926922	102926923	rs34592089	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	4q24	ENSG00000251309	rs34592089-A	NR	3E-16		8.166	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1370	chr4	102926922	102926923	rs34592089	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	4q24	ENSG00000251309	rs34592089-A	NR	1E-12		0.046348527	[0.034-0.059] unit decrease	Affymetrix [NR]	N
1370	chr4	102926922	102926923	rs34592089	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	4q24	NR	rs34592089-?	NR	1E-15	(EA)			Affymetrix, Illumina [~ 9000000] (imputed)	N
1370	chr4	102952865	102952866	rs10516491	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	4q24	RP11-498M5.2	rs10516491-?	NR	3E-9		0.067	[0.045-0.089] unit increase	Illumina [34656550] (imputed)	N
1370	chr4	103001648	103001649	rs1813006	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	4q24		rs1813006-G	0.940131	2E-9		0.0510235	[0.034-0.068] unit increase	NR [11722792] (imputed)	N
1370	chr4	103001648	103001649	rs1813006	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	4q24	SLC39A8	rs1813006-T		1E-17		0.045	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
1370	chr4	103001648	103001649	rs1813006	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	4q24	BANK1	rs1813006-T	NR	2E-13		0.0474077	[0.035-0.06] unit decrease	Affymetrix [NR]	N
1371	chr4	103034390	103034391	rs13101632	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	4q24	NR	rs13101632-?	NR	7E-9	(left accumbens area)			NR [9227495] (imputed)	N
1371	chr4	103034390	103034391	rs13101632	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	4q24	BANK1	rs13101632-A	NR	4E-8		5.47	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1371	chr4	103054208	103054209	rs115641191	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	4q24	Intergenic	rs115641191-T	NR	2E-7	(between families)	5.237	unit increase	Affymetrix [up to 15107142] (imputed)	N
1371	chr4	103112469	103112470	rs6855246	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	4q24	NR	rs6855246-A	0.92	5E-8	(Temporal Pole)	2.442144	[1.57-3.32] unit increase	Affymetrix, Illumina [NR]	N
1371	chr4	103112469	103112470	rs6855246	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	4q24	NR	rs6855246-?	NR	9E-11	(right accumbens area)			NR [9227495] (imputed)	N
1371	chr4	103112469	103112470	rs6855246	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	4q24	NR	rs6855246-?	NR	5E-9	(white matter)			NR [9227495] (imputed)	N
1371	chr4	103112469	103112470	rs6855246	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	4q24	NR	rs6855246-?	NR	2E-12	(left accumbens area)			NR [9227495] (imputed)	N
1371	chr4	103112469	103112470	rs6855246	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	4q24	NA	rs6855246-G	0.0836	9E-14	(Female)	1.1061947	[1.08-1.13]	Affymetrix, Illumina [NR] (imputed)	N
1371	chr4	103112469	103112470	rs6855246	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	4q24	SLC39A8	rs6855246-A	0.92	9E-10		0.034	NR unit decrease	Affymetrix, Illumina [10537485] (imputed)	N
1371	chr4	103112469	103112470	rs6855246	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	4q24	SLC39A8	rs6855246-A	NR	2E-14		7.676	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1371	chr4	103112469	103112470	rs6855246	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	4q24	SLC39A8	rs6855246-A	NR	9E-13		0.03958507	[0.029-0.05] unit increase	Affymetrix [NR]	N
1371	chr4	103112469	103112470	rs6855246	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	4q24	intergenic	rs6855246-?		1E-9		1.1363636	[1.1-1.19]	Affymetrix, Illumina [NR]	N
1371	chr4	103112812	103112813	rs238449	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	4q24	SLC39A8	rs238449-A	NR	3E-9		0.019479712	[0.013-0.026] unit decrease	Affymetrix [NR]	N
1371	chr4	103113349	103113350	rs457134	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	4q24	NR	rs457134-?	NR	1E-15				Affymetrix [~ 8270000] (imputed)	N
1371	chr4	103113813	103113814	rs77616117	34827661	Emmert DB	2021-11-09	Biomolecules	Genetic and Metabolic Determinants of Atrial Fibrillation in a General Population Sample: The CHRIS Study.	Atrial fibrillation	110 European ancestry cases, 10,399 European ancestry controls	NA	4q24		rs77616117-?	NR	9E-7				Illumina [19057004] (imputed)	N
1371	chr4	103118767	103118768	rs151381	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	4q24		rs151381-T	0.4927	7E-10		0.0087	[0.006-0.0114] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1371	chr4	103125030	103125031	rs10031823	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	4q24	SLC39A8	rs10031823-T	NR	2E-8		5.632	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1371	chr4	103125488	103125489	rs1506505	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	4q24	NR	rs1506505-A	NR	1E-8		5.679	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1371	chr4	103133043	103133044	rs7667281	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	4q24	SLC39A8	rs7667281-T	NR	6E-9		0.017445652	[0.012-0.023] unit increase	Affymetrix [NR]	N
1371	chr4	103138620	103138621	rs151412	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	4q24	NR	rs151412-T	NR	8E-9		5.764	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1371	chr4	103138627	103138628	rs151411	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	4q24	SLC39A8	rs151411-A	NR	2E-8		5.658	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1371	chr4	103146887	103146888	rs35225200	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	4q24		rs35225200-A	0.917422	6E-10		0.0438608	[0.03-0.058] unit increase	NR [11722792] (imputed)	N
1371	chr4	103146887	103146888	rs35225200	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	4q24		rs35225200-C	NR	5E-13		0.0313	[0.023-0.04] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
1371	chr4	103146887	103146888	rs35225200	33510174	Jones G	2021-01-28	Nat Commun	Genome-wide meta-analysis of muscle weakness identifies 15 susceptibility loci in older men and women.	Low hand grip strength (60 years and older) (EWGSOP)	14,007 European ancestry male cases, 107,048 European ancestry male controls	NA	4q24	SLC39A8	rs35225200-C	0.08	3E-8		0.1289	unit increase	Affymetrix, Illumina [9464541] (imputed)	N
1371	chr4	103146887	103146888	rs35225200	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	4q24	SLC39A8	rs35225200-?		1E-10				NR [6786993] (imputed)	N
1371	chr4	103146887	103146888	rs35225200	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	4q24	SLC39A8	rs35225200-?	NR	4E-13		0.023882955	[0.017-0.03] unit increase	NR [7306098]	N
1371	chr4	103146887	103146888	rs35225200	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption interaction (2df test)	91,110 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	237,996 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,315 European ancestry non-drinkers, 2,761 African ancestry non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	4q24	SLC39A8	rs35225200-A	0.93	1E-12	(AA, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1371	chr4	103146887	103146888	rs35225200	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	4q24	BANK1, SLC39A8	rs35225200-?		2E-12		1.1363636	[1.1-1.18]	Affymetrix, Illumina [NR]	N
1371	chr4	103146889	103146890	rs35518360	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	4q24		rs35518360-A	0.91727	2E-10		0.0460417	[0.032-0.06] unit decrease	NR [11722792] (imputed)	N
1371	chr4	103146889	103146890	rs35518360	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	4q24		rs35518360-A	0.917267	9E-17		0.062139	[0.047-0.077] unit decrease	NR [11722792] (imputed)	N
1371	chr4	103146889	103146890	rs35518360	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in IDL	115,082 European ancestry individuals	NA	4q24		rs35518360-A	0.91727	6E-9		0.0450186	[0.03-0.06] unit decrease	NR [11722792] (imputed)	N
1371	chr4	103146889	103146890	rs35518360	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	4q24		rs35518360-A	0.91727	5E-8		0.0391767	[0.025-0.053] unit increase	NR [11722792] (imputed)	N
1371	chr4	103146889	103146890	rs35518360	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in IDL	115,082 European ancestry individuals	NA	4q24		rs35518360-A	0.91727	2E-16		0.0616082	[0.047-0.076] unit increase	NR [11722792] (imputed)	N
1371	chr4	103146889	103146890	rs35518360	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	4q24		rs35518360-A	0.91727	2E-14		0.0573001	[0.043-0.072] unit increase	NR [11722792] (imputed)	N
1371	chr4	103146889	103146890	rs35518360	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	ST2 protein levels	21,758 European ancestry individuals	9,173 individuals	4q24		rs35518360-A	0.93	4E-10		0.1109	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1371	chr4	103146889	103146890	rs35518360	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	4q24	SLC39A8	rs35518360-A	0.9141	4E-6		0.055	[0.032-0.078] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1371	chr4	103146889	103146890	rs35518360	25056061	Ripke S	2014-07-22	Nature	Biological insights from 108 schizophrenia-associated genetic loci.	Schizophrenia	32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	1,513 European ancestry cases, 66,236 European ancestry controls	4q24	SLC39A8	rs35518360-T	0.078	8E-15		1.166861	[1.12-1.21]	Affymetrix, Illumina [9005918] (imputed)	N
1372	chr4	103164223	103164224	rs150834401	28498854	Liang J	2017-05-12	PLoS Genet	Single-trait and multi-trait genome-wide association analyses identify novel loci for blood pressure in African-ancestry populations.	Diastolic blood pressure	Up to 31,155 African individuals	Up to 4,187 African individuals, up to 14,016 Korean ancestry individuals, up to 23,914 European ancestry individuals, up to 12,278 Hispanic individuals	4q24	NR	rs150834401-?	NR	1E-6		0.8088	[0.48-1.13] unit increase	Affymetrix, Illumina [at least 30072738] (imputed)	N
1372	chr4	103184238	103184239	rs112519623	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	4q24	NR	rs112519623-A	0.0159	4E-6		0.0255335	[0.015-0.036] unit decrease	NR [~ 9732723] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	4q24		rs13107325-C	0.925718	3E-10		0.0470502	[0.032-0.062] unit decrease	NR [11722792] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	4q24		rs13107325-C	0.925714	3E-9		0.0438462	[0.029-0.058] unit decrease	NR [11722792] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	4q24		rs13107325-C	0.925718	2E-14		0.0571594	[0.043-0.072] unit decrease	NR [11722792] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	4q24		rs13107325-C	0.925718	2E-8		0.0432072	[0.028-0.058] unit decrease	NR [11722792] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	4q24		rs13107325-C	0.925718	3E-11		0.0499628	[0.035-0.065] unit decrease	NR [11722792] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	4q24		rs13107325-C	0.925718	3E-12		0.0535091	[0.039-0.068] unit decrease	NR [11722792] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	4q24		rs13107325-C	0.925718	8E-15		0.0586839	[0.044-0.073] unit decrease	NR [11722792] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total phospholipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	4q24		rs13107325-C	0.925718	4E-9		0.0442121	[0.03-0.059] unit increase	NR [11722792] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large HDL	115,082 European ancestry individuals	NA	4q24		rs13107325-C	0.925718	9E-14		0.052796	[0.039-0.067] unit increase	NR [11722792] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium HDL	115,082 European ancestry individuals	NA	4q24		rs13107325-C	0.925718	4E-19		0.0652315	[0.051-0.08] unit increase	NR [11722792] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	4q24		rs13107325-C	0.925718	2E-23		0.0689495	[0.055-0.082] unit increase	NR [11722792] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in HDL	115,082 European ancestry individuals	NA	4q24		rs13107325-C	0.925718	6E-24		0.071311	[0.057-0.085] unit increase	NR [11722792] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total esterified cholesterol levels	115,082 European ancestry individuals	NA	4q24		rs13107325-C	0.925718	5E-8		0.0414386	[0.027-0.056] unit increase	NR [11722792] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total concentration of lipoprotein particles	115,082 European ancestry individuals	NA	4q24		rs13107325-C	0.925718	2E-17		0.063093	[0.049-0.078] unit increase	NR [11722792] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholines levels	115,006 European ancestry individuals	NA	4q24		rs13107325-C	0.925726	2E-11		0.0498448	[0.035-0.064] unit increase	NR [11722792] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Sphingomyelin levels	115,006 European ancestry individuals	NA	4q24		rs13107325-C	0.925726	5E-16		0.05971	[0.045-0.074] unit increase	NR [11722792] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	4q24		rs13107325-C	0.925726	3E-13		0.053297	[0.039-0.068] unit decrease	NR [11722792] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of monounsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	4q24		rs13107325-C	0.925726	9E-9		0.0432974	[0.029-0.058] unit decrease	NR [11722792] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	4q24		rs13107325-C	0.925718	7E-16		0.0619694	[0.047-0.077] unit decrease	NR [11722792] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	4q24		rs13107325-C	0.925718	1E-15		0.059838	[0.045-0.074] unit decrease	NR [11722792] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large HDL	115,082 European ancestry individuals	NA	4q24		rs13107325-C	0.925718	2E-13		0.0522766	[0.038-0.066] unit increase	NR [11722792] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium HDL	115,082 European ancestry individuals	NA	4q24		rs13107325-C	0.925718	9E-17		0.0610888	[0.047-0.075] unit increase	NR [11722792] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large HDL	115,082 European ancestry individuals	NA	4q24		rs13107325-C	0.925718	1E-23		0.0694866	[0.056-0.083] unit increase	NR [11722792] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in HDL	115,082 European ancestry individuals	NA	4q24		rs13107325-C	0.925718	4E-22		0.0687325	[0.055-0.083] unit increase	NR [11722792] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphoglycerides levels	115,006 European ancestry individuals	NA	4q24		rs13107325-C	0.925726	7E-10		0.0457592	[0.031-0.06] unit increase	NR [11722792] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphatidylcholine levels	115,006 European ancestry individuals	NA	4q24		rs13107325-C	0.925726	4E-11		0.0485053	[0.034-0.063] unit increase	NR [11722792] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	HDL cholesterol levels	115,082 European ancestry individuals	NA	4q24		rs13107325-C	0.925718	3E-26		0.0745959	[0.061-0.088] unit increase	NR [11722792] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycine levels	114,978 European ancestry individuals	NA	4q24		rs13107325-C	0.92569	3E-11		0.0493389	[0.035-0.064] unit increase	NR [11722792] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	4q24		rs13107325-C	0.925714	7E-17		0.0581901	[0.045-0.072] unit decrease	NR [11722792] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	4q24		rs13107325-C	0.925718	9E-25		0.0716693	[0.058-0.085] unit increase	NR [11722792] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	4q24		rs13107325-C	0.925718	3E-12		0.0520563	[0.037-0.067] unit increase	NR [11722792] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	4q24		rs13107325-C	0.925718	7E-9		0.0425959	[0.028-0.057] unit increase	NR [11722792] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	4q24		rs13107325-C	0.925718	9E-23		0.0703087	[0.056-0.084] unit increase	NR [11722792] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	4q24		rs13107325-C	0.925718	5E-22		0.0665832	[0.053-0.08] unit increase	NR [11722792] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in HDL	115,082 European ancestry individuals	NA	4q24		rs13107325-C	0.925718	1E-24		0.0715063	[0.058-0.085] unit increase	NR [11722792] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large HDL particles	115,082 European ancestry individuals	NA	4q24		rs13107325-C	0.925718	4E-14		0.0536293	[0.04-0.068] unit increase	NR [11722792] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium HDL particles	115,082 European ancestry individuals	NA	4q24		rs13107325-C	0.925718	5E-21		0.0682079	[0.054-0.082] unit increase	NR [11722792] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	4q24		rs13107325-C	0.925718	2E-23		0.0688612	[0.055-0.082] unit increase	NR [11722792] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of HDL particles	115,082 European ancestry individuals	NA	4q24		rs13107325-C	0.925718	4E-19		0.066025	[0.052-0.081] unit increase	NR [11722792] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	4q24		rs13107325-C	0.925718	9E-15		0.0572357	[0.043-0.072] unit increase	NR [11722792] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	4q24		rs13107325-C	0.925718	4E-9		0.0447636	[0.03-0.06] unit increase	NR [11722792] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	4q24		rs13107325-C	0.925718	6E-9		0.0435269	[0.029-0.058] unit increase	NR [11722792] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	4q24		rs13107325-C	0.925718	1E-15		0.0563786	[0.043-0.07] unit increase	NR [11722792] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium HDL	115,082 European ancestry individuals	NA	4q24		rs13107325-C	0.925718	2E-22		0.0708212	[0.057-0.085] unit increase	NR [11722792] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	4q24		rs13107325-C	0.925718	6E-22		0.0670132	[0.053-0.081] unit increase	NR [11722792] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	4q24		rs13107325-C	0.925718	5E-8		0.0415676	[0.027-0.056] unit decrease	NR [11722792] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	4q24		rs13107325-C	0.925718	4E-26		0.0746876	[0.061-0.089] unit increase	NR [11722792] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	4q24		rs13107325-C	0.925718	3E-13		0.054294	[0.04-0.069] unit increase	NR [11722792] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	4q24		rs13107325-C	0.925718	6E-9		0.0459371	[0.03-0.061] unit increase	NR [11722792] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	4q24		rs13107325-C	0.925718	6E-14		0.0561251	[0.041-0.071] unit increase	NR [11722792] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	4q24		rs13107325-C	0.925718	3E-12		0.0532963	[0.038-0.068] unit increase	NR [11722792] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	4q24		rs13107325-C	0.925718	2E-10		0.0468314	[0.032-0.061] unit increase	NR [11722792] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	4q24		rs13107325-C	0.925718	4E-14		0.053841	[0.04-0.068] unit increase	NR [11722792] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	4q24		rs13107325-C	0.925718	1E-22		0.0710526	[0.057-0.085] unit increase	NR [11722792] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	4q24		rs13107325-C	0.925718	4E-22		0.0671483	[0.054-0.081] unit increase	NR [11722792] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	4q24		rs13107325-C	0.925718	4E-19		0.0621989	[0.049-0.076] unit increase	NR [11722792] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein A1 levels	115,082 European ancestry individuals	NA	4q24		rs13107325-C	0.925718	7E-22		0.0692251	[0.055-0.083] unit increase	NR [11722792] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	4q24		rs13107325-T	0.08	2E-54		15.53	z score increase	Affymetrix [9061022] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	4q24		rs13107325-T	0.08	6E-175		28.2	z score increase	Affymetrix [9061022] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	4q24		rs13107325-T	0.08	2E-24		10.21	z score increase	Affymetrix [9061022] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	4q24		rs13107325-T	NR	3E-21		0.0418	[0.033-0.05] unit decrease	Affymetrix, Illumina [20536134] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	4q24		rs13107325-T	NR	3E-11		0.0284	[0.02-0.037] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	4q24		rs13107325-T	NR	1E-15		0.031	[0.023-0.039] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	4q24		rs13107325-T	NR	8E-33		0.0559	[0.047-0.065] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	4q24		rs13107325-T	NR	2E-19		0.0349	[0.027-0.043] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	4q24		rs13107325-T	NR	4E-10		0.0716	[0.049-0.094] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	4q24		rs13107325-T	NR	7E-17		0.0363	[0.028-0.045] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	4q24		rs13107325-T	NR	4E-25		0.0373	[0.03-0.044] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	4q24		rs13107325-T	NR	4E-24		0.0375	[0.03-0.045] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	4q24		rs13107325-T	NR	2E-17		0.0266	[0.021-0.033] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	4q24		rs13107325-T	NR	6E-80		0.082	[0.074-0.09] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	4q24		rs13107325-T	NR	2E-11		0.0283	[0.02-0.037] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	4q24		rs13107325-T	NR	1E-21		0.0432	[0.034-0.052] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	4q24		rs13107325-T	NR	5E-42		0.064	[0.055-0.073] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	4q24		rs13107325-T	NR	1E-28		0.0493	[0.041-0.058] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	4q24		rs13107325-T	NR	3E-42		0.0593	[0.051-0.068] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	4q24	NR	rs13107325-T	0.0706	1E-17				NR [9056863] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	4q24	NR	rs13107325-T	0.0706	1E-17				NR [9056863] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	34450027	Boer CG	2021-08-24	Cell	Deciphering osteoarthritis genetics across 826,690 individuals from 9 populations.	Osteoarthritis	175,803 European ancestry cases, 644,862 European ancestry controls, 1,265 Japanese ancestry cases, 449 Southern Chinese ancestry cases, 3,330 Japanese ancestry controls, 981 Southern Chinese ancestry controls	NA	4q24		rs13107325-T	0.0714	3E-17		1.081447	[1.061913357-1.10134005]	Affymetrix, Illumina [NR] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	34187846	Ong JS	2021-06-29	Gut	Multitrait genetic association analysis identifies 50 new risk loci for gastro-oesophageal reflux, seven new loci for Barrett's oesophagus and provides insights into clinical heterogeneity in reflux diagnosis.	Gastroesophageal reflux disease	129,080 European ancestry cases, 473,524 European ancestry controls	462,753 cases, 1,127,474 controls	4q24	SLC39A8	rs13107325-C	0.93	2E-14		0.07	unit decrease	NR [2324712] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	4q24	SLC39A8	rs13107325-T	NR	8E-13		0.0387088	[0.028-0.049] unit decrease	Affymetrix [319769] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	4q24	SLC39A8	rs13107325-T	NR	3E-14		0.0411267	[0.031-0.052] unit decrease	Affymetrix [319769] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	4q24	SLC39A8	rs13107325-T	NR	2E-13		0.040075	[0.029-0.051] unit decrease	Affymetrix [321114] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	4q24	SLC39A8	rs13107325-T	NR	2E-11		0.0366395	[0.026-0.047] unit decrease	Affymetrix [321169] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	34006833	Elvsashagen T	2021-05-18	Nat Commun	The genetic architecture of the human thalamus and its overlap with ten common brain disorders.	Lateral thalamic nuclei volume	30,114 white British ancestry individuals		4q24	SLC39A8	rs13107325-T	0.0759	1E-12		0.113293	[0.082-0.145] unit decrease	Affymetrix [8165723] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	34006833	Elvsashagen T	2021-05-18	Nat Commun	The genetic architecture of the human thalamus and its overlap with ten common brain disorders.	Anterior thalamic nuclei volume	30,114 white British ancestry individuals		4q24	SLC39A8	rs13107325-T	0.0759	9E-13		0.113983	[0.083-0.145] unit decrease	Affymetrix [8165723] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Triglycerides	429,011 European ancestry individuals	NA	4q24		rs13107325-T	0.07	2E-14		0.029	mmol/L increase	NR [NR] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	4q24		rs13107325-T	0.07	5E-32				NR [NR] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	High density lipoprotein cholesterol levels	392,965 European ancestry individuals	NA	4q24		rs13107325-T	0.07	5E-118		0.078	mmol/L decrease	NR [NR] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	4q24		rs13107325-T	0.07	3E-28		0.031	% increase	NR [NR] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Aspartate aminotransferase levels	424,778 European ancestry individuals	NA	4q24		rs13107325-T	0.07	3E-54		0.058	U/L increase	NR [NR] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Alanine aminotransferase levels	429,203 European ancestry individuals	NA	4q24		rs13107325-T	0.07	8E-10		0.022	U/L increase	NR [NR] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	4q24	SLC39A8	rs13107325-C	0.925031	8E-14		0.00710285	[0.0052-0.009] unit increase	Affymetrix [13995440] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	4q24	NR	rs13107325-T	0.0758	3E-48		0.006227	[0.0054-0.0071] unit decrease	Affymetrix [NR] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	33861876	Dao C	2021-04-16	Addiction	The Impact of Removing Former Drinkers from Genome-wide Association Studies of AUDIT-C.	Alcohol use disorder (consumption score)	5,135 European ancestry individuals inluding former drinkers, 126,375 European ancestry individuals excluding former drinkers	NR	4q24	SLC39A8	rs13107325-?	NR	4E-14		0.153	[0.11-0.19] unit increase	NR [7682250] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 20)	19,670 European ancestry individuals	NA	4q24		rs13107325-?	NR	4E-12				NR [9705931] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body mass index and systole blood pressure (pairwise)	472,402 European ancestry individuals, 16,962 East Asian, South Asian, Hispanic and African American ancestry individuals	NA	4q24	SLC39A8	rs13107325-T	0.0795	2E-22				Affymetrix, Illumina [2331072] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	33510174	Jones G	2021-01-28	Nat Commun	Genome-wide meta-analysis of muscle weakness identifies 15 susceptibility loci in older men and women.	Low hand grip strength (60 years and older) (EWGSOP)	48,596 European ancestry cases, 207,927 European ancestry controls	NA	4q24	SLC39A8	rs13107325-T	0.0739	7E-11		0.0897	[0.063-0.117] unit increase	Affymetrix, Illumina [9457422] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	33482370	Kim SK	2021-01-19	J Shoulder Elbow Surg	A Genome Wide Association Study For Shoulder Impingement and Rotator Cuff Disease.	Shoulder impingement or rotator cuff tear	3,864 European ancestry shoulder impingement cases, 5,701 European ancestry rotator cuff tear cases, up to 614,568 European ancestry controls	NA	4q24	SLC39A8, UBE2D3	rs13107325-T	0.0745	4E-8		1.1557	NR	Affymetrix [up to 17556449] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	4q24	NR	rs13107325-C	0.0795229	6E-23		0.11577766	[0.093-0.139] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	4q24	NR	rs13107325-T	0.07	3E-17		0.0297	[0.023-0.037] unit decrease	NR [NR]	N
1372	chr4	103188708	103188709	rs13107325	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	High density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	4q24	SLC39A8	rs13107325-?		4E-10		0.0865	[0.059-0.114] unit increase	Illumina [31500000] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	33128006	Timmins IR	2020-10-30	Commun Biol	Genome-wide association study of self-reported walking pace suggests beneficial effects of brisk walking on health and survival.	Walking pace	450,967 European ancestry individuals	NA	4q24	SLC39A8	rs13107325-C	NR	6E-24		0.024021	[0.019-0.029] unit increase	Affymetrix [10061374] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	33045005	Vogelezang S	2020-10-12	PLoS Genet	Novel loci for childhood body mass index and shared heritability with adult cardiometabolic traits.	Childhood body mass index	39,620 European ancestry individuals	NA	4q24	SLC39A8	rs13107325-T	0.07	4E-8		0.095	[0.062-0.128] unit increase	Affymetrix, Illumina [8227808] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	32989287	Cuellar-Partida G	2020-09-28	Nat Hum Behav	Genome-wide association study identifies 48 common genetic variants associated with handedness.	Left-handedness	1,766,671 European ancestry individuals	NA	4q24	SLC39A8	rs13107325-T	0.0788	5E-14		1.0570797	[NR]	Illumina [12493444] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	4q24	SLC39A8	rs13107325-T	0.074663	1E-29		0.048567016	[0.04-0.057] unit decrease	Affymetrix [93095623] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	4q24	SLC39A8	rs13107325-T	0.074597	1E-10		0.0265556	[0.019-0.034] unit increase	Affymetrix [93095623] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	4q24	SLC39A8	rs13107325-T	0.074589	7E-32		0.049483463	[0.041-0.058] unit increase	Affymetrix [93095623] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	4q24	SLC39A8	rs13107325-T	0.0745900000000001	2E-31		0.049112022	[0.041-0.057] unit increase	Affymetrix [93095623] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	4q24	SLC39A8	rs13107325-T	0.074637	4E-11		0.027977897	[0.02-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q24	NR	rs13107325-T	0.0715291	2E-14				Affymetrix, Illumina [24332387] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	4q24	NR	rs13107325-T	0.074343	1E-16		0.029182	[0.022-0.036] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q24	NR	rs13107325-T	0.071471	1E-37				Affymetrix, Illumina [24653286] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	4q24	NR	rs13107325-T	0.074272	1E-38		0.04586	[0.039-0.053] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q24	NR	rs13107325-T	0.0715958	3E-38				Affymetrix, Illumina [24558453] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	4q24	NR	rs13107325-T	0.074412	2E-40		0.046911	[0.04-0.054] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (min-P)	26,502 European ancestry individuals	NA	4q24	INTS3, SLC27A3, GATAD2B, DENND4B, CRTC2, SLC39A1, CREB3L4, JTB, RAB13, RPS27, NUP210L, TPM3, C1orf189, C1orf43, UBAP2L, HAX1	rs13107325-?		1E-23				NR [7428630] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	4q24	NR	rs13107325-?		5E-73				NR [7428630] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical thickness (MOSTest)	26,502 European ancestry individuals	NA	4q24	CA14, APH1A, C1orf54, C1orf51, MRPS21, PRPF3, RPRD2, TARS2, ECM1, ADAMTSL4, AL356356.1	rs13107325-?		8E-38				NR [7428630] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	4q24	SIX3	rs13107325-?		5E-20				NR [7428630] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (min-P)	26,502 European ancestry individuals	NA	4q24	C1orf106, KIF21B, CACNA1S	rs13107325-?		2E-23				NR [7428630] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	4q24	BANK1, SLC39A8	rs13107325-?		3E-124				NR [7428630] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	67,764 individuals	NA	4q24	NR	rs13107325-?		8E-11				NR [8377093]	N
1372	chr4	103188708	103188709	rs13107325	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	65,967 individuals	NA	4q24	NR	rs13107325-?		5E-9				NR [8377093]	N
1372	chr4	103188708	103188709	rs13107325	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	4q24	NR	rs13107325-C	0.9265	3E-8		0.0473	[0.03-0.064] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol use disorder	57,564 European ancestry cases, 256,395 European ancestry controls	NA	4q24	NR	rs13107325-T	0.0792	8E-19		8.864	[NR] unit decrease	Affymetrix [7003540] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		4q24	SLC39A8	rs13107325-C	0.92511	3E-28		0.0287138	[0.024-0.034] unit decrease	Affymetrix [12370749]	N
1372	chr4	103188708	103188709	rs13107325	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	4q24	NR	rs13107325-T		3E-10		0.13	[0.091-0.169] unit increase	NR [NR]	N
1372	chr4	103188708	103188709	rs13107325	32339537	Roberts V	2020-04-24	J Invest Dermatol	Genome wide association study identifies genetic associations with perceived age.	Youthful appearance (self-reported)	423,992 European ancestry individuals	NA	4q24	SLC39A8	rs13107325-C	0.924534	1E-12		0.94332457	NR	Affymetrix [~ 9600000] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	4q24	SLC39A8	rs13107325-T		2E-24		0.048	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	4q24	NR	rs13107325-?		2E-12		0.0291705	[0.021-0.037] unit decrease	Affymetrix [19400418] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	32247823	Parisinos CA	2020-04-02	J Hepatol	Genome-wide and Mendelian randomisation studies of liver MRI yield insights into the pathogenesis of steatohepatitis.	Liver fibrosis and steatohepatitis severity (MRI cT1 measure)	14,440 European ancestry individuals	NA	4q24	SLC39A8	rs13107325-T	0.07	1E-133		0.544	[0.5-0.59] unit increase	Affymetrix [~ 12000000] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	4q24	BANK1, SLC39A8, NFKB1	rs13107325-?		4E-17				Affymetrix, Illumina [NR] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	4q24	SLC39A8	rs13107325-C	0.925092	6E-15		0.0295524	[0.022-0.037] unit decrease	Affymetrix [NR] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	4q24	SLC39A8	rs13107325-C	0.925102	6E-10		0.0245488	[0.017-0.032] unit increase	Affymetrix [NR] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	4q24	SLC39A8	rs13107325-C	0.925055	2E-108		0.0801624	[0.073-0.087] unit increase	Affymetrix [NR] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	4q24	SLC39A8	rs13107325-C	0.925003	5E-82		0.0715695	[0.064-0.079] unit increase	Affymetrix [NR] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	32201043	Smeland OB	2020-02-08	Biol Psychiatry	Genome-wide Association Analysis of Parkinson's Disease and Schizophrenia Reveals Shared Genetic Architecture and Identifies Novel Risk Loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	NA	4q24	SLC39A8	rs13107325-T		7E-8		0.1495	[0.095-0.204] unit decrease	Illumina [NR]	N
1372	chr4	103188708	103188709	rs13107325	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	4q24	SLC39A8	rs13107325-?	NR	5E-10		0.031	[0.022-0.04] unit increase	Affymetrix [5701386] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	4q24	SLC39A8	rs13107325-?	NR	1E-10		0.0313	[0.023-0.04] unit decrease	Affymetrix [5701386] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	31998841	Thompson A	2020-01-15	Sci Adv	Functional validity, role, and implications of heavy alcohol consumption genetic loci.	Alcohol consumption (heavy vs. light/non-drinkers)	21,967 British ancestry cases, 103,282 British ancestry controls	47,967 European ancestry individuals	4q24	SLC39A8	rs13107325-C	0.928	7E-9		5.798	NR z score increase	Affymetrix [11141077] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	31879980	German CA	2019-12-26	Genet Epidemiol	Ordered multinomial regression for genetic association analysis of ordinal phenotypes at Biobank scale.	Hypertension	30,822 British ancestry normal blood pressure individuals, 25,242 British ancestry elevated blood pressure individuals, 50,461 British ancestry stage 1 hypertension individuals, 75,286 British ancestry stage 2 hypertension individuals, 3,754 British ancestry hypertension crisis individuals	NA	4q24	SLC39A8	rs13107325-?	NR	5E-12		0.07963385	NR unit increase	Affymetrix [464137]	N
1372	chr4	103188708	103188709	rs13107325	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	4q24	NR	rs13107325-?	NR	4E-13		1.16637	[1.12-1.21]	Affymetrix, Illumina [12447948] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	4q24	NR	rs13107325-?	NR	7E-14	(white matter)			NR [9227495] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	4q24	NR	rs13107325-?	NR	2E-18	(left accumbens area)			NR [9227495] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	4q24	NR	rs13107325-?	NR	2E-15	(right accumbens area)			NR [9227495] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	4q24	NR	rs13107325-?	NR	3E-19				Affymetrix [~ 8270000] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	4q24	NR	rs13107325-?	NR	5E-20				Affymetrix [~ 8270000] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	4q24	NR	rs13107325-?	NR	8E-39				Affymetrix [~ 8270000] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	31636452	Satizabal CL	2019-10-21	Nat Genet	Genetic architecture of subcortical brain structures in 38,851 individuals.	Nucleus accumbens volume	32,562 European ancestry individuals	341 South East and East Asian ancestry individuals, 85 African American individuals	4q24	NR	rs13107325-T	0.0638	8E-10		6.15	NR z score increase	Affymetrix, Illumina [NR] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	31589552	Lind L	2019-10-07	Metab Syndr Relat Disord	Genome-Wide Association Study of the Metabolic Syndrome in UK Biobank.	Metabolic syndrome	291,107 European ancestry individuals	NA	4q24	SLC39A8	rs13107325-T	0.0748556	4E-10		0.0760904	[0.052-0.1] unit increase	Affymetrix [9463307] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	31358974	Evangelou E	2019-07-29	Nat Hum Behav	New alcohol-related genes suggest shared genetic mechanisms with neuropsychiatric disorders.	Alcohol consumption	480,842 European ancestry individuals	NA	4q24	SLC39A8	rs13107325-T	0.07	1E-15		0.016	[0.012-0.02] unit decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	4q24	SLC39A8	rs13107325-T	0.0745797	4E-10		0.071593836	[0.049-0.094] unit decrease	Affymetrix [7288503] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	30940813	Kranzler HR	2019-04-02	Nat Commun	Genome-wide association study of alcohol consumption and use disorder in 274,424 individuals from multiple populations.	Alcohol use disorder (consumption score)	200,680 European American individuals, 56,495 African American individuals, 14,112 Latino American individuals, 1,366 East Asian American individuals, 189 South Asian American individuals	NA	4q24	SLC39A8	rs13107325-C	0.937	2E-30		11.45	NR z score increase	Affymetrix [up to 12500000] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	30940813	Kranzler HR	2019-04-02	Nat Commun	Genome-wide association study of alcohol consumption and use disorder in 274,424 individuals from multiple populations.	Alcohol use disorder (consumption score)	200,680 European American individuals, 56,495 African American individuals, 14,112 Latino American individuals, 1,366 East Asian American individuals, 189 South Asian American individuals	NA	4q24	SLC39A8	rs13107325-C	0.921	1E-25	(EA)	0.1034	[0.084-0.123] unit increase	Affymetrix [up to 12500000] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	30940813	Kranzler HR	2019-04-02	Nat Commun	Genome-wide association study of alcohol consumption and use disorder in 274,424 individuals from multiple populations.	Alcohol use disorder	34,658 European American cases, 167,346 European American controls, 17,267 African American cases, 39,381 African American controls, 3,449 Latino American cases, 10,726 Latino American controls, 164 East Asian American cases, 1,210 East Asian American controls, 46 South Asian American cases, 144 South Asian American controls	NA	4q24	SLC39A8	rs13107325-C	0.937	3E-14		7.6	NR z score increase	Affymetrix [up to 12500000] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	30940813	Kranzler HR	2019-04-02	Nat Commun	Genome-wide association study of alcohol consumption and use disorder in 274,424 individuals from multiple populations.	Alcohol use disorder	34,658 European American cases, 167,346 European American controls, 17,267 African American cases, 39,381 African American controls, 3,449 Latino American cases, 10,726 Latino American controls, 164 East Asian American cases, 1,210 East Asian American controls, 46 South Asian American cases, 144 South Asian American controls	NA	4q24	SLC39A8	rs13107325-C	0.921	3E-14	(EA)	1.1325	[1.1-1.16]	Affymetrix [up to 12500000] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	HDL cholesterol levels	up to 23,761 African ancestry individuals, 13,171 Asian ancestry individuals, up to 90,272 European ancestry individuals, 6,620 Hispanic individuals	NA	4q24		rs13107325-T	0.0723	2E-6		0.0123	[0.0072-0.0174] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	30846698	Dashti HS	2019-03-07	Nat Commun	Genome-wide association study identifies genetic loci for self-reported habitual sleep duration supported by accelerometer-derived estimates.	Sleep duration (short sleep)	106,192  European ancestry cases, 305,742 European ancestry controls	47,180  adults, 10,554 children or adolescents	4q24	SLC39A8	rs13107325-T	NR	3E-13		1.078		NR [14661600] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Alcohol consumption (drinks per week)	up to 357,854 European ancestry individuals	NA	4q24	SLC39A8	rs13107325-T	0.0721	5E-17		0.0383	[0.029-0.047] unit decrease	Illumina [~ 250000] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Osteoarthritis	77,052 European ancestry cases, 378,169 European ancestry controls	NA	4q24	NR	rs13107325-T	0.08	8E-19		1.1	[1.07-1.12]	Affymetrix, Illumina [up to 17000000] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	30649180	Luo Q	2019-01-16	JAMA Psychiatry	Association of a Schizophrenia-Risk Nonsynonymous Variant With Putamen Volume in Adolescents: A Voxelwise and Genome-Wide Association Study.	Voxel-wise structural brain imaging measurements	1,721 European ancestry adolescent individuals	6,932 British ancestry individuals	4q24	SLC39A8	rs13107325-?	NR	9E-18	(right putamen peak voxel)			Illumina [466114]	N
1372	chr4	103188708	103188709	rs13107325	30649180	Luo Q	2019-01-16	JAMA Psychiatry	Association of a Schizophrenia-Risk Nonsynonymous Variant With Putamen Volume in Adolescents: A Voxelwise and Genome-Wide Association Study.	Voxel-wise structural brain imaging measurements	1,721 European ancestry adolescent individuals	6,932 British ancestry individuals	4q24	SLC39A8	rs13107325-?	NR	2E-11	(left putamen peak voxel)			Illumina [466114]	N
1372	chr4	103188708	103188709	rs13107325	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	4q24	SLC39A8	rs13107325-T	0.0734	4E-13		0.035913233	[0.026-0.046] unit decrease	Affymetrix [~ 11515000] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Alcohol consumption (drinks per week)	414,343 European ancestry individuals	NA	4q24	SLC39A8	rs13107325-T	0.0744	1E-24		0.04357754	[0.035-0.052] unit decrease	Affymetrix [11514936] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	4q24	NR	rs13107325-T	0.0722	1E-23		0.0256461	[0.021-0.031] unit decrease	NR [~ 9732723] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week)	up to 941,280 European ancestry individuals	NA	4q24	NR	rs13107325-T	0.0722	2E-22		0.027504515	[0.022-0.033] unit decrease	NR [~ 10000000] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	4q24		rs13107325-?	NR	1E-20				NR [~ 8900000] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	4q24		rs13107325-?	NR	1E-36				NR [~ 8900000] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	4q24		rs13107325-?	NR	6E-24				NR [~ 8900000] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	4q24		rs13107325-?	NR	9E-18				NR [~ 8900000] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	4q24		rs13107325-?	NR	1E-21				NR [~ 8900000] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	4q24		rs13107325-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	4q24		rs13107325-?	NR	1E-36				NR [~ 8900000] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	4q24		rs13107325-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	4q24	NR	rs13107325-?	NR	5E-10		0.25064	[0.17-0.33] unit increase	Affymetrix [7794483] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	4q24	NR	rs13107325-?	NR	4E-10	(male)	0.30825	[0.21-0.4] unit increase	Affymetrix [7794483] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	4q24	SLC39A8	rs13107325-T	0.0752	1E-17		0.5532	[0.43-0.68] mmHg decrease	Affymetrix [NR] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Diastolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	4q24	SLC39A8	rs13107325-T	0.3032	8E-12		0.322	[0.23-0.41] mmHg decrease	Affymetrix [NR] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	4q24	NR	rs13107325-T	0.0758327	4E-20		0.0535076	[0.042-0.065] unit decrease	NR [19129689] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	30336701	Sanchez-Roige S	2018-10-19	Am J Psychiatry	Genome-Wide Association Study Meta-Analysis of the Alcohol Use Disorders Identification Test (AUDIT) in Two Population-Based Cohorts.	Alcohol use disorder (consumption score)	121,604 British ancestry individuals	NA	4q24	SLC39A8	rs13107325-T	NR	3E-10		0.01	[0.0061-0.0139] unit decrease	NR [16213998]	N
1372	chr4	103188708	103188709	rs13107325	30305740	Elliott LT	2018-10-10	Nature	Genome-wide association studies of brain imaging phenotypes in UK Biobank.	Brain imaging measurements	8,428 British ancestry individuals	4,386 European ancestry individuals	4q24	NR	rs13107325-T	0.073861	7E-39	(Imaging-derived phenotype IDP_T1_FAST_ROIs_L_putamen)	0.37008	[0.31-0.43] unit increase	NR [11734353] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	30305740	Elliott LT	2018-10-10	Nature	Genome-wide association studies of brain imaging phenotypes in UK Biobank.	Brain imaging measurements	8,428 British ancestry individuals	4,386 European ancestry individuals	4q24	NR	rs13107325-T	0.073861	2E-41	(Imaging-derived phenotype IDP_T1_FAST_ROIs_R_ventral_striatum)	0.33352	[0.29-0.38] unit increase	NR [11734353] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	30305740	Elliott LT	2018-10-10	Nature	Genome-wide association studies of brain imaging phenotypes in UK Biobank.	Brain imaging measurements	8,428 British ancestry individuals	4,386 European ancestry individuals	4q24	NR	rs13107325-T	0.073861	2E-39	(Imaging-derived phenotype IDP_T1_FAST_ROIs_R_putamen)	0.36694	[0.31-0.42] unit increase	NR [11734353] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	30305740	Elliott LT	2018-10-10	Nature	Genome-wide association studies of brain imaging phenotypes in UK Biobank.	Brain imaging measurements	8,428 British ancestry individuals	4,386 European ancestry individuals	4q24	NR	rs13107325-T	0.073861	1E-42	(Imaging-derived phenotype IDP_T1_FAST_ROIs_L_ventral_striatum)	0.33842	[0.29-0.39] unit increase	NR [11734353] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	4q24	SLC39A8	rs13107325-T	0.0765	2E-50		0.0798	[0.069-0.09] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	4q24	NR	rs13107325-T	0.0808	4E-19		0.0306	[0.024-0.037] unit decrease	NR [~ 27400000] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	315,284 European ancestry male individuals	NA	4q24	NR	rs13107325-T	0.0808	4E-19		0.0306	[0.024-0.037] unit decrease	NR [~ 27400000] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	4q24	NA	rs13107325-T	0.082	4E-47		0.0468	[0.041-0.053] unit increase	NR [~ 27400000] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	4q24	NA	rs13107325-T	0.082	4E-47		0.0468	[0.041-0.053] unit increase	NR [~ 27400000] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	4q24	NA	rs13107325-T	0.082	4E-47		0.0468	[0.041-0.053] unit increase	NR [~ 27400000] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	4q24	NR	rs13107325-C	NR	3E-21		0.051	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	4q24	Intergenic	rs13107325-C	0.9166	5E-10		0.0219	[0.015-0.029] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	4q24		rs13107325-T	0.0721	2E-18		0.0239	[0.019-0.029] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	4q24	Intergenic	rs13107325-T	0.0721	2E-24	(MTAG)	0.0259	[0.021-0.031] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	4q24	Intergenic	rs13107325-T	0.075	3E-18	(MTAG)	0.038	[0.029-0.047] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	4q24	Intergenic	rs13107325-T	0.075	1E-23		0.0543	[0.044-0.065] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	4q24	NR	rs13107325-T	NR	2E-21		9.494	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption interaction (2df test)	63,608 European ancestry drinkers, 10,193 African American or Afro-Caribbean heavy drinkers,  2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,494 European ancestry non-drinkers, 11,224 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,002 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,452 Hispanic drinkers, 43,316 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,945 Asian ancestry non-drinkers, 6,925 Hispanic non-drinkers	4q24	SLC39A8	rs13107325-T	0.07	1E-15	(AA, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption interaction (2df test)	91,110 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	237,996 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,315 European ancestry non-drinkers, 2,761 African ancestry non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	4q24	SLC39A8	rs13107325-T	0.07	4E-11	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption interaction (2df test)	63,607 European ancestry drinkers, 10,193 African American or Afro-Caribbean drinkers, 2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,492 European ancestry non-drinkers, 11,223 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,058 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	4q24	SLC39A8	rs13107325-T	0.07	4E-22	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption interaction (2df test)	63,607 European ancestry drinkers, 10,193 African American or Afro-Caribbean drinkers, 2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,492 European ancestry non-drinkers, 11,223 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,058 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	4q24	SLC39A8	rs13107325-T	0.07	2E-23	(AA, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	4q24	SLC39A8	rs13107325-T	NR	8E-17		8.327	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	223,215 British ancestry individuals	111,610 British ancestry individuals	4q24	SLC39A8	rs13107325-T	0.075	4E-23		0.006	[0.0048-0.0072] unit decrease	Affymetrix [15275733] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	29615537	Kulminski AM	2018-03-01	Aging (Albany NY)	Strong impact of natural-selection-free heterogeneity in genetics of age-related phenotypes.	Diastolic blood pressure	up to 33,431 European ancestry individuals	NA	4q24	SLC39A8	rs13107325-A	0.0818	9E-10		0.91369206	[0.62-1.21] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	4q24	NR	rs13107325-C	NR	5E-11		0.055	unit increase	Affymetrix [at least 7091467] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	4q24	NR	rs13107325-C	0.925	1E-9	(EA)	0.053	unit increase	Affymetrix [at least 7091467] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	4q24	NR	rs13107325-C	NR	8E-6		0.038	unit increase	Affymetrix [at least 7091467] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	4q24	NR	rs13107325-C	NR	6E-22		0.067	unit increase	Affymetrix [at least 7091467] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	4q24	NR	rs13107325-C	0.925	6E-21	(EA)	0.067	unit increase	Affymetrix [at least 7091467] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	29483656	Pardinas AF	2018-02-26	Nat Genet	Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.	Schizophrenia	40,675 European ancestry cases, 64,643 European ancestry controls	1,651 European ancestry cases, 4,111 cases, 142,717 European ancestry controls, 11,507 controls	4q24	BANK1, SLC39A8	rs13107325-?	NR	1E-16		1.1737089	[1.14-1.21]	Illumina [8000000] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	29381148	Gong J	2017-12-21	Int J Obes (Lond)	Trans-ethnic analysis of metabochip data identifies two new loci associated with BMI.	Body mass index	35,606 African American individuals, 26,048 Hispanic/Latino individuals, 22,466 Asian or Native Hawaiian ancestry individuals, 17,859 European ancestry individuals, 535 Native American individuals	NA	4q24	SLC39A8	rs13107325-A		8E-6		0.011	unit increase	Illumina [at least 200000]	N
1372	chr4	103188708	103188709	rs13107325	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	4q24	SLC39A8	rs13107325-T	NR	3E-18		0.05044097	[0.039-0.062] unit decrease	Affymetrix [NR]	N
1372	chr4	103188708	103188709	rs13107325	29273807	Turcot V	2017-12-22	Nat Genet	Protein-altering variants associated with body mass index implicate pathways that control energy intake and expenditure in obesity.	Body mass index	up to 449,889 European ancestry individuals, up to 29,398 South Asian ancestry individuals, up to 27,610 African American individuals, up to 8,839 East Asian individuals, up to 10,772 Hispanic ancestry individuals	up to 196,766 European ancestry individuals	4q24	SLC39A8	rs13107325-T	0.06	5E-40		0.0495	[0.042-0.057] unit increase	Illumina [246328]	N
1372	chr4	103188708	103188709	rs13107325	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Systolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	4q24	SLC39A8	rs13107325-T	0.065	6E-10	(EA, initial)	0.933	[0.64-1.23] unit decrease	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Diastolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	4q24	SLC39A8	rs13107325-T	0.065	1E-13	(EA, initial)	0.686	[0.51-0.87] unit decrease	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	4q24	SLC39A8	rs13107325-T	0.0875	2E-6	(EA, men)	0.0868	[0.051-0.122] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	4q24	SLC39A8	rs13107325-T	0.0781	4E-7	(men)	0.0661	[0.04-0.092] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	4q24	SLC39A8	rs13107325-T	0.0765	1E-9	(EA)	0.0531	[0.036-0.07] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	4q24	SLC39A8	rs13107325-T	0.0754	4E-9		0.0508	[0.034-0.068] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	4q24	SLC39A8	rs13107325-?	NR	8E-10				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	4q24	SLC39A8	rs13107325-?	NR	2E-9	(men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	4q24	SLC39A8	rs13107325-?	NR	2E-8	(EA, men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	4q24	SLC39A8	rs13107325-?	NR	2E-10	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	4q24	SLC39A8	rs13107325-T	0.0765	5E-10	(EA, men)	0.0741	[0.051-0.097] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	4q24	SLC39A8	rs13107325-T	0.0765	2E-10	(EA)	0.0505	[0.035-0.066] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	4q24	SLC39A8	rs13107325-T	0.0754	3E-10		0.0488	[0.034-0.064] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	4q24	SLC39A8	rs13107325-T	0.0754	1E-9	(men)	0.0698	[0.047-0.092] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	4q24	SLC39A8	rs13107325-T	0.0737	2E-10				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	4q24	SLC39A8	rs13107325-T	0.0737	1E-8	(men)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in non-smokers	77,279 European ancestry women, 47,280 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	4q24	SLC39A8	rs13107325-T	0.0737	7E-7	(men)	0.0574	[0.035-0.08] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in non-smokers	77,279 European ancestry women, 47,280 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	4q24	SLC39A8	rs13107325-T	0.0737	1E-7		0.0449	[0.028-0.062] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	4q24	SLC39A8	rs13107325-T	0.0737	4E-9	(men)	0.0607	[0.041-0.081] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	4q24	SLC39A8	rs13107325-T	0.0737	3E-10		0.0469	[0.032-0.062] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	4q24	SLC39A8	rs13107325-C		3E-9		0.643	unit increase	Affymetrix [at least 2696785] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	4q24	SLC39A8	rs13107325-C		1E-8	(EA)	0.646	unit increase	Affymetrix [at least 2696785] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	4q24	SLC39A8	rs13107325-C		2E-21		0.719	unit increase	Affymetrix [at least 2696785] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	4q24	SLC39A8	rs13107325-C		8E-11	(EA)	0.477	unit increase	Affymetrix [at least 2696785] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	4q24	SLC39A8	rs13107325-C		4E-11		0.466	unit increase	Affymetrix [at least 2696785] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	4q24	SLC39A8	rs13107325-C		5E-33		0.55	unit increase	Affymetrix [at least 2696785] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Systolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	4q24	SLC39A8	rs13107325-T	0.07	5E-11		0.837	[0.59-1.09] mm Hg decrease	Affymetrix, Illumina, Perlegen [128272]	N
1372	chr4	103188708	103188709	rs13107325	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Diastolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	4q24	SLC39A8	rs13107325-T	0.07	2E-14		0.602	[0.45-0.75] mm Hg decrease	Affymetrix, Illumina, Perlegen [128272]	N
1372	chr4	103188708	103188709	rs13107325	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Mean arterial pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	NA	4q24	SLC39A8	rs13107325-T	0.0627171181140933	1E-11		0.6347496	[0.45-0.82] unit decrease	Illumina [247039]	N
1372	chr4	103188708	103188709	rs13107325	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Systolic blood pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	4q24	SLC39A8	rs13107325-T	0.0603	1E-7		0.042	unit decrease	Illumina [242296]	N
1372	chr4	103188708	103188709	rs13107325	26961502	Wood AR	2016-03-10	Diabetologia	Variants in the FTO and CDKAL1 loci have recessive effects on risk of obesity and type 2 diabetes, respectively.	Body mass index	29,925 British ancestry cases, 89,763 British ancestry controls	NA	4q24	SLC39A8	rs13107325-T	NR	4E-7	(additive model)	0.04	[0.024-0.056] unit increase	NR [9288881] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	26908625	Johansson A	2016-01-21	Hum Mol Genet	Genome-wide association and Mendelian randomization study of NT-proBNP in patients with acute coronary syndrome.	NT-proBNP levels in acute coronary syndrome	at least 3,691 European ancestry individuals, up to 29 Asian ancestry individuals, 20 African ancestry individuals	at least 5,404 European ancestry individuals, up to 54 Asian ancestry individuals, 33 African ancestry individuals	4q24	SLC39A8	rs13107325-T	0.078	6E-10		0.216	[0.15-0.28] ng/L increase	Illumina [10962468] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	26604143	Felix JF	2015-11-24	Hum Mol Genet	Genome-wide association analysis identifies three new susceptibility loci for childhood body mass index.	Childhood body mass index	34,744 European ancestry children	11,313 European ancestry children	4q24	SLC39A8	rs13107325-T	0.07	4E-7		0.081	[0.05-0.112] unit increase	Affymetrix, Illumina [2499691] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	26604143	Felix JF	2015-11-24	Hum Mol Genet	Genome-wide association analysis identifies three new susceptibility loci for childhood body mass index.	Childhood body mass index	34,744 European ancestry children	11,313 European ancestry children	4q24	NR	rs13107325-T	NR	1E-8				Affymetrix, Illumina [2499691] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	4q24	NR	rs13107325-T	0.0725000653554868	4E-16		0.04919773	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	4q24	NR	rs13107325-T	NR	2E-12		1.16	[NR]	Illumina [7158791] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	4q24	SLC39A8	rs13107325-T	0.074	3E-9	(EA, men)	0.053	[0.035-0.07] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1372	chr4	103188708	103188709	rs13107325	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	4q24	SLC39A8	rs13107325-T	0.072	2E-12	(EA)	0.048	[0.034-0.061] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1372	chr4	103188708	103188709	rs13107325	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	4q24	SLC39A8	rs13107325-T	0.072	1E-12		0.047	[0.034-0.06] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1372	chr4	103188708	103188709	rs13107325	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	4q24	SLC39A8	rs13107325-T	0.071	3E-7	(EA, women)	0.045	[0.028-0.062] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1372	chr4	103188708	103188709	rs13107325	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	4q24	SLC39A8	rs13107325-T	0.08	1E-15		0.071	[NR] unit decrease	NR [NR] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	21909115	Ehret GB	2011-09-11	Nature	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Systolic blood pressure	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	4q24	SLC39A8	rs13107325-T	0.05	3E-14		0.981	[NR] mmHg decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	21909115	Ehret GB	2011-09-11	Nature	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Hypertension	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	4q24	SLC39A8	rs13107325-T	0.05	5E-7		0.105	[NR] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	21909115	Ehret GB	2011-09-11	Nature	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Diastolic blood pressure	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	4q24	SLC39A8	rs13107325-T	0.05	2E-17		0.684	[NR] mmHg decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	21909110	Wain LV	2011-09-11	Nat Genet	Genome-wide association study identifies six new loci influencing pulse pressure and mean arterial pressure.	Blood pressure	74,064 European ancestry individuals	48,607 European ancestry individuals	4q24	SLC39A8	rs13107325-T	0.12	1E-10	(Mean Arterial Pressure)	0.633	[0.44-0.82] mmHg decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	20935630	Speliotes EK	2010-10-10	Nat Genet	Association analyses of 249,796 individuals reveal 18 new loci associated with body mass index.	Body mass index	Up to 123,865 European ancestry individuals	Up to 125,931 European ancestry individuals	4q24	SLC39A8	rs13107325-T	0.07	2E-13		0.19	[0.11-0.27] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2800000] (imputed)	N
1372	chr4	103188708	103188709	rs13107325	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	HDL cholesterol	99,900 European ancestry individuals	NA	4q24	SLC39A8	rs13107325-T	0.07	7E-11		0.84	[0.53-1.15] mg/dL decrease	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1372	chr4	103190127	103190128	rs151401	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	4q24	SLC39A8	rs151401-G	0.23	2E-12		7.07	z-score increase	Affymetrix [4314223] (imputed)	N
1372	chr4	103190228	103190229	rs17032400	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	4q24	SLC39A8	rs17032400-T	NR	2E-9		6.029	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1372	chr4	103190228	103190229	rs17032400	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	4q24	SLC39A8	rs17032400-T	NR	6E-10		0.018137816	[0.012-0.024] unit decrease	Affymetrix [NR]	N
1372	chr4	103191786	103191787	rs151404	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	4q24	SLC39A8	rs151404-A	NR	1E-8		0.0193588	[0.013-0.026] unit decrease	Affymetrix [321114] (imputed)	N
1372	chr4	103192242	103192243	rs9992479	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Initial pursuit acceleration	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	4q24	SLC39A8	rs9992479-A	0.4469	6E-6				Illumina [4404269] (imputed)	N
1372	chr4	103198081	103198082	rs13135092	35079123	Chambers T	2022-01-25	Mol Psychiatry	Genetic common variants associated with cerebellar volume and their overlap with mental disorders: a study on 33,265 individuals from the UK-Biobank.	Total cerebellar volume (excluding Crus I vermis)	33,265 European ancestry individuals	NA	4q24		rs13135092-A	NR	3E-22		0.0532	[0.042-0.064] unit decrease	Affymetrix [6193476] (imputed)	N
1372	chr4	103198081	103198082	rs13135092	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Schizophrenia (MTAG)	940,613 European ancestry individuals	NA	4q24		rs13135092-?	NR	6E-11				NR [2625067]	N
1372	chr4	103198081	103198082	rs13135092	33830993	Johnston KJA	2021-04-08	PLoS Genet	Sex-stratified genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	387,649 British ancestry individuals	NA	4q24	SLC39A8	rs13135092-?	NR	3E-14			[NR]	NR [NR] (imputed)	N
1372	chr4	103198081	103198082	rs13135092	33830993	Johnston KJA	2021-04-08	PLoS Genet	Sex-stratified genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	209,093 British ancestry women	NA	4q24	SLC39A8	rs13135092-A	NR	2E-9		0.038	[0.026-0.05] unit decrease	NR [NR] (imputed)	N
1372	chr4	103198081	103198082	rs13135092	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs anorexia nervosa (ordinary least squares (OLS))	40,675 schizophrenia cases, 16,992 anorexia nervosa cases	NA	4q24		rs13135092-?	NR	6E-9		0.0192	NR unit increase	NR [4425810] (imputed)	N
1372	chr4	103198081	103198082	rs13135092	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs ADHD (ordinary least squares (OLS))	40,675 schizophrenia cases, 19,099 ADHD cases	NA	4q24		rs13135092-?	NR	4E-8		0.0189	NR unit increase	NR [4428082] (imputed)	N
1372	chr4	103198081	103198082	rs13135092	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Schizophrenia (MTAG)	at least 33,640 European ancestry cases, at least 43,456 European ancestry controls	NA	4q24	NR	rs13135092-A	0.9145	9E-13		0.14663482	[0.11-0.19] unit decrease	NR [NR]	N
1372	chr4	103198081	103198082	rs13135092	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Bipolar disorder (MTAG)	at least 20,352 European ancestry cases, at least 31,358 European ancestry controls	NA	4q24	NR	rs13135092-A	0.9145	2E-8		0.114025064	[0.074-0.154] unit decrease	NR [NR]	N
1372	chr4	103198081	103198082	rs13135092	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Verbal-numerical reasoning	171,304 British ancestry individuals	NA	4q24		rs13135092-?	NR	8E-17				NR [7857346] (imputed)	N
1372	chr4	103198081	103198082	rs13135092	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Cognitive traits (MTAG)	331,679 British ancestry individuals	NA	4q24		rs13135092-?	NR	3E-10				NR [7857346] (imputed)	N
1372	chr4	103198081	103198082	rs13135092	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical thickness (min-P)	26,502 European ancestry individuals	NA	4q24	MACF1, KIAA0754, BMP8A, PABPC4	rs13135092-?		9E-12				NR [7428630] (imputed)	N
1372	chr4	103198081	103198082	rs13135092	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Bipolar disorder (MTAG)	65,682 individuals	NA	4q24	NR	rs13135092-?		1E-8				NR [520857]	N
1372	chr4	103198081	103198082	rs13135092	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Problematic alcohol use (MTAG)	972,915 European ancestry individuals	NA	4q24	NR	rs13135092-G	0.0808	3E-42		0.051934656	[0.044-0.059] unit decrease	Affymetrix [10613246] (imputed)	N
1372	chr4	103198081	103198082	rs13135092	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Problematic alcohol use	435,563 European ancestry individuals	NA	4q24	SLC39A8	rs13135092-A	0.9192	2E-31		11.673	[NR] z score increase	Affymetrix [14069427] (imputed)	N
1372	chr4	103198081	103198082	rs13135092	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol consumption (drinks per week) (MTAG)	972,915 European ancestry individuals	NA	4q24	NR	rs13135092-G	0.0725	2E-35		0.041750107	[0.035-0.048] unit decrease	Affymetrix [NR] (imputed)	N
1372	chr4	103198081	103198082	rs13135092	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	4q24	NR	rs13135092-G	0.08151	7E-13		0.03256222	[0.024-0.041] unit increase	Affymetrix [10549349] (imputed)	N
1372	chr4	103198081	103198082	rs13135092	31194737	Johnston KJA	2019-06-13	PLoS Genet	Genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	387,649 British ancestry individuals	NA	4q24	SLC39A8	rs13135092-A	0.08071	2E-13		0.0328	[0.024-0.041] unit decrease	NR [NR]	N
1372	chr4	103198081	103198082	rs13135092	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter alcoholic beverage consumption	336,448 European ancestry individuals	39,924 European ancestry individuals	4q24	SLC39A8	rs13135092-A	0.9176	3E-14		0.0141	[0.01-0.018] unit increase	Affymetrix [~ 7740000] (imputed)	N
1372	chr4	103198081	103198082	rs13135092	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	4q24	NR	rs13135092-G	0.0825	3E-16		1.0928961	[1.07-1.11]	Affymetrix, Illumina [NR] (imputed)	N
1372	chr4	103198081	103198082	rs13135092	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	4q24	SLC39A8	rs13135092-G	NR	2E-33				Affymetrix, Illumina [NR] (imputed)	N
1372	chr4	103198081	103198082	rs13135092	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	4q24	SLC39A8	rs13135092-G	NR	2E-32	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1372	chr4	103198081	103198082	rs13135092	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	4q24	SLC39A8	rs13135092-G	NR	2E-31				Affymetrix, Illumina [NR] (imputed)	N
1372	chr4	103198081	103198082	rs13135092	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	4q24	SLC39A8	rs13135092-G	NR	1E-29	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1372	chr4	103198081	103198082	rs13135092	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	4q24	SLC39A8	rs13135092-G	NR	7E-11		0.014	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1372	chr4	103198081	103198082	rs13135092	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	4q24	SLC39A8	rs13135092-G	NR	2E-10	(EA)	0.015	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1372	chr4	103198081	103198082	rs13135092	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	4q24	SLC39A8	rs13135092-G	NR	4E-8		0.0158	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1372	chr4	103198081	103198082	rs13135092	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	4q24	SLC39A8	rs13135092-G	NR	2E-7	(EA)	0.01628	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1372	chr4	103198081	103198082	rs13135092	30677029	Riveros-McKay F	2019-01-24	PLoS Genet	Genetic architecture of human thinness compared to severe obesity.	Obese vs. thin	1,456 British ancestry obese children, 1,471 European ancestry thin adults	up to 7,526 British ancestry obese individuals, 7,962 obese individuals, up to 3,532 British ancestry thin individuals, 8,106 thin individuals	4q24	SLC39A8	rs13135092-G	0.07243	1E-8		1.32	[1.20-1.45]	Illumina [41266535] (imputed)	N
1372	chr4	103198081	103198082	rs13135092	30670697	Kilpelainen TO	2019-01-22	Nat Commun	Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity.	HDL cholesterol x physical activity interaction (2df test)	7,395 African American inactive individuals, 13,092 African American active individuals, 2,753 Asian ancestry inactive individuals, 3,650 Asian ancestry active individuals, 22,963 European ancestry inactive individuals, 61,939 European ancestry active individuals, 2,829 Hispanic or Latin American inactive individuals, 6,358 Hispanic or Latin American active individuals	1,886 African American inactive individuals, 1,892 African American active individuals, 1,217 South African Black ancestry inactive individuals, 389 South African Black ancestry active individuals, 2,494 East Asian ancestry inactive individuals, 1,947 East Asian ancestry active individuals,  724 South Asian ancestry inactive individuals, 1,425 South Asian ancestry active individuals, 41,042 European ancestry inactive individuals, 66,575 European ancestry active individuals, 2,619 Hispanic inactive individuals, 8,802 Hispanic active individuals	4q24	NR	rs13135092-A	0.9311	5E-19				Affymetrix, Illumina [at least 2500000] (imputed)	N
1372	chr4	103198081	103198082	rs13135092	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	4q24	SLC39A8	rs13135092-A	0.9119	3E-11		0.022803178	[0.016-0.03] unit increase	Illumina [9339358] (imputed)	N
1372	chr4	103198081	103198082	rs13135092	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	4q24		rs13135092-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1372	chr4	103198081	103198082	rs13135092	30336701	Sanchez-Roige S	2018-10-19	Am J Psychiatry	Genome-Wide Association Study Meta-Analysis of the Alcohol Use Disorders Identification Test (AUDIT) in Two Population-Based Cohorts.	Alcohol use disorder (total score)	141,932 European ancestry individuals	NA	4q24	RN7SL728P, SLC39A8	rs13135092-A	NR	3E-14		7.59	[NR] z score increase	NR [16213998]	N
1372	chr4	103198081	103198082	rs13135092	30336701	Sanchez-Roige S	2018-10-19	Am J Psychiatry	Genome-Wide Association Study Meta-Analysis of the Alcohol Use Disorders Identification Test (AUDIT) in Two Population-Based Cohorts.	Alcohol use disorder (dependence and problematic use scores)	121,604 British ancestry individuals	NA	4q24	SLC39A8	rs13135092-G	NR	5E-15		0.01	[NR] unit decrease	NR [16213998]	N
1372	chr4	103198081	103198082	rs13135092	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	4q24	SLC39A8	rs13135092-A	0.9185	4E-9		0.0308	[0.021-0.041] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1372	chr4	103198081	103198082	rs13135092	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	4q24	SLC39A8	rs13135092-A	0.9169	3E-26		0.005	[0.004-0.006] unit increase	Affymetrix [15275733] (imputed)	N
1372	chr4	103198081	103198082	rs13135092	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	4q24	NR	rs13135092-A	NR	5E-11		0.054	unit increase	Affymetrix [at least 7091467] (imputed)	N
1372	chr4	103198081	103198082	rs13135092	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	4q24	NR	rs13135092-A	0.919	8E-10	(EA)	0.052	unit increase	Affymetrix [at least 7091467] (imputed)	N
1372	chr4	103198081	103198082	rs13135092	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	4q24	NR	rs13135092-A	NR	3E-6		0.039	unit increase	Affymetrix [at least 7091467] (imputed)	N
1372	chr4	103198081	103198082	rs13135092	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	4q24	NR	rs13135092-A	0.919	7E-6	(EA)	0.039	unit increase	Affymetrix [at least 7091467] (imputed)	N
1372	chr4	103198081	103198082	rs13135092	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	4q24	NR	rs13135092-A	NR	7E-21		0.063	unit increase	Affymetrix [at least 7091467] (imputed)	N
1372	chr4	103198081	103198082	rs13135092	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	4q24	NR	rs13135092-A	0.919	2E-19	(EA)	0.063	unit increase	Affymetrix [at least 7091467] (imputed)	N
1372	chr4	103198081	103198082	rs13135092	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	HDL cholesterol	up to 62,166 European ancestry individuals	NA	4q24	SLC39A8	rs13135092-A	0.97	3E-13		0.129	[0.094-0.164] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
1372	chr4	103204844	103204845	rs233817	25865494	Chan Y	2015-04-09	Am J Hum Genet	Genome-wide Analysis of Body Proportion Classifies Height-Associated Variants by Mechanism of Action and Implicates Genes Important for Skeletal Development.	Sitting height ratio	3,545 African American individuals, 12,965 European ancestry women, 8,625 European ancestry men	NA	4q24	NR	rs233817-C	0.712	4E-6	(EA)	0.05	[0.028-0.072] unit decrease	Affymetrix, Illumina [up to 10250422] (imputed)	N
1372	chr4	103211253	103211254	rs233811	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	4q24	SLC39A8	rs233811-A	NR	1E-9		6.074	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1372	chr4	103213361	103213362	rs173048	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	4q24	NR	rs173048-?	NR	2E-15				Affymetrix [~ 8270000] (imputed)	N
1372	chr4	103216781	103216782	rs62327949	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	4q24	NR	rs62327949-A	NR	3E-8		5.528	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1372	chr4	103228829	103228830	rs13105581	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	4q24	SLC39A8	rs13105581-T	0.079124	2E-12		0.02915161	[0.021-0.037] unit increase	Affymetrix [93095623] (imputed)	N
1372	chr4	103228829	103228830	rs13105581	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	4q24	NR	rs13105581-T	NR	2E-9		6.003	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1372	chr4	103228829	103228830	rs13105581	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	4q24	SLC39A8	rs13105581-T	NR	3E-11		6.629	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1372	chr4	103228829	103228830	rs13105581	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	4q24	SLC39A8	rs13105581-T	NR	2E-10		0.036114357	[0.025-0.047] unit decrease	Affymetrix [NR]	N
1372	chr4	103231926	103231927	rs62327954	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	4q24	SLC39A8	rs62327954-G	0.122623	2E-9		0.020573035	[0.014-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1372	chr4	103247439	103247440	rs7692921	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	4q24		rs7692921-?	NR	6E-11				NR [~ 8900000] (imputed)	N
1372	chr4	103255691	103255692	rs7664683	27005419	Borne Y	2016-03-22	Hum Mol Genet	Genome wide association study identifies two loci associated with cadmium in erythrocytes among never-smokers.	Erythrocyte cadmium concentration in never smokers	1,728 individuals	NA	4q24	SLC39A8	rs7664683-T	0.08977	3E-7		0.1486	[NR] unit decrease	Illumina [658884]	N
1372	chr4	103270186	103270187	rs77252379	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	4q24	NR	rs77252379-G	NR	9E-10		0.05	[0.034-0.066] unit decrease	Affymetrix [9000000] (imputed)	N
1372	chr4	103283116	103283117	rs34333163	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	4q24	NR	rs34333163-G	NR	6E-24		0.0474	[0.038-0.057] unit decrease	Affymetrix [9000000] (imputed)	N
1372	chr4	103283116	103283117	rs34333163	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	4q24	NR	rs34333163-G	NR	2E-17		0.0418	[0.032-0.051] unit decrease	Affymetrix [9000000] (imputed)	N
1372	chr4	103283116	103283117	rs34333163	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	4q24	NR	rs34333163-G	NR	2E-10		0.0299	[0.021-0.039] unit decrease	Affymetrix [9000000] (imputed)	N
1372	chr4	103283116	103283117	rs34333163	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	4q24	NR	rs34333163-G	NR	1E-47		0.0712	[0.062-0.081] unit decrease	Affymetrix [9000000] (imputed)	N
1372	chr4	103283116	103283117	rs34333163	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	4q24	NR	rs34333163-G	NR	2E-21		0.0468	[0.037-0.056] unit decrease	Affymetrix [9000000] (imputed)	N
1372	chr4	103283116	103283117	rs34333163	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	4q24	NR	rs34333163-G	NR	2E-24		0.0481	[0.039-0.057] unit increase	Affymetrix [9000000] (imputed)	N
1372	chr4	103283116	103283117	rs34333163	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	4q24	NR	rs34333163-G	NR	2E-38		0.0639	[0.054-0.074] unit decrease	Affymetrix [9000000] (imputed)	N
1372	chr4	103283116	103283117	rs34333163	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	4q24	SLC39A8	rs34333163-G	0.070832	2E-11		0.02907804	[0.021-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
1372	chr4	103283116	103283117	rs34333163	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	4q24	NR	rs34333163-?	NR	3E-9	(white matter)			NR [9227495] (imputed)	N
1373	chr4	103284864	103284865	rs13114738	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	4q24	NR	rs13114738-C	NR	3E-12		0.046	unit increase	Affymetrix [at least 7091467] (imputed)	N
1373	chr4	103284864	103284865	rs13114738	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	4q24	NR	rs13114738-C	0.917	3E-11	(EA)	0.045	unit increase	Affymetrix [at least 7091467] (imputed)	N
1373	chr4	103284864	103284865	rs13114738	27790247	He L	2016-11-03	Front Genet	Pleiotropic Meta-Analyses of Longitudinal Studies Discover Novel Genetic Variants Associated with Age-Related Diseases.	Age-related diseases, mortality and associated endophenotypes	9,618 European ancestry individuals	19,796 European ancestry individuals	4q24	NR	rs13114738-?	NR	8E-8				Affymetrix [NR]	N
1373	chr4	103284864	103284865	rs13114738	27790247	He L	2016-11-03	Front Genet	Pleiotropic Meta-Analyses of Longitudinal Studies Discover Novel Genetic Variants Associated with Age-Related Diseases.	Age-related disease endophenotypes	9,618 European ancestry individuals	19,796 European ancestry individuals	4q24	NR	rs13114738-?	NR	1E-10				Affymetrix [NR]	N
1373	chr4	103349739	103349740	rs6533014	24204828	Zheng JS	2013-10-28	PLoS One	Genome-wide contribution of genotype by environment interaction to variation of diabetes-related traits.	Homeostasis model assessment of beta-cell function (dietary factor interaction)	820 European ancestry individuals	NA	4q24	LOC100133085, NFKB1	rs6533014-A	0.479	7E-6	(n-6 PUFA)			Affymetrix [590000]	N
1373	chr4	103370525	103370526	rs116445911	32433515	Meyers JL	2020-05-20	Mol Psychiatry	A genome-wide association study of interhemispheric theta EEG coherence: implications for neural connectivity and alcohol use behavior.	Theta EEG coherence	6,644 European ancestry individuals, 2,166 African American individuals	NA	4q24	NR	rs116445911-A		4E-8	(centro-parietal low theta coherence at C4-P4-C3-P3)			Illumina [6832792] (imputed)	N
1373	chr4	103385335	103385336	rs531685993	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	4q24	NR	rs531685993-?	NR	4E-15	(left accumbens area)			NR [9227495] (imputed)	N
1373	chr4	103385335	103385336	rs531685993	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	4q24	NR	rs531685993-?	NR	3E-13	(right accumbens area)			NR [9227495] (imputed)	N
1373	chr4	103387093	103387094	rs34316881	34006833	Elvsashagen T	2021-05-18	Nat Commun	The genetic architecture of the human thalamus and its overlap with ten common brain disorders.	Thalamus volume	30,114 white British ancestry individuals			AF213884.1	rs34316881-T	0.08341	5E-15		67.5466	[50.63-84.46] unit increase	Affymetrix [8165723] (imputed)	N
1373	chr4	103388440	103388441	rs230489	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	4q24	NR	rs230489-?	NR	3E-8	(right accumbens area)			NR [9227495] (imputed)	N
1373	chr4	103388440	103388441	rs230489	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	4q24	ENSG00000251572	rs230489-T	NR	5E-10		6.216	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1373	chr4	103388440	103388441	rs230489	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	4q24	ENSG00000251572	rs230489-T	NR	7E-9		0.028072529	[0.019-0.038] unit increase	Affymetrix [NR]	N
1373	chr4	103399048	103399049	rs62328536	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	4q24		rs62328536-A	NR	1E-9		0.0128	[0.0087-0.0169] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
1373	chr4	103401722	103401723	rs141936164	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	4q24		rs141936164-G	0.353625	1E-17		0.019907316	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1373	chr4	103401722	103401723	rs141936164	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	4q24	NR	rs141936164-G	0.350763	2E-21		0.018654	[0.015-0.023] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1373	chr4	103401722	103401723	rs141936164	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	4q24		rs141936164-?	NR	9E-10				NR [~ 8900000] (imputed)	N
1373	chr4	103407341	103407342	rs11097787	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q24	NR	rs11097787-T	0.398427	6E-21				Affymetrix, Illumina [23467995] (imputed)	N
1373	chr4	103407341	103407342	rs11097787	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q24	NR	rs11097787-T	0.398964	2E-10				Affymetrix, Illumina [19905671] (imputed)	N
1373	chr4	103407341	103407342	rs11097787	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	4q24	NR	rs11097787-T	0.402632	4E-12		0.014501	[0.01-0.019] SD unit decrease	Affymetrix, Illumina [50036608] (imputed)	N
1373	chr4	103410816	103410817	rs374187209	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	4q24		rs374187209-A	0.452528	6E-11		0.0151347155	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1374	chr4	103415821	103415822	rs6833745	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	4q24		rs6833745-C	NR	6E-36		0.0268	[0.023-0.031] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
1374	chr4	103418956	103418957	rs980455	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	4q24		rs980455-C	NR	3E-13		0.0153	[0.011-0.019] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
1374	chr4	103423492	103423493	rs10013613	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	4q24	NFKB1	rs10013613-T	0.401929	3E-13		0.016551338	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1374	chr4	103423548	103423549	rs28484580	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	4q24	NR	rs28484580-G	0.22406199999999998	2E-8		0.0205764	[0.013-0.028] unit increase	Affymetrix [16580851] (imputed)	N
1374	chr4	103434252	103434253	rs3774937	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	4q24	NFKB1	rs3774937-?	NR	2E-18	(subset analysis)			Illumina [130052]	N
1374	chr4	103434252	103434253	rs3774937	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	4q24	NR	rs3774937-G	0.3257	5E-14	(EA)	1.1043711	[1.08-1.13]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1374	chr4	103444697	103444698	rs1585213	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Non-albumin protein levels	98,538 Japanese ancestry individuals	NA	4q24	NFKB1	rs1585213-?	NR	1E-15		0.03708	[0.028-0.046] unit decrease novel	Illumina [6108953] (imputed)	N
1374	chr4	103446114	103446115	rs1598856	28425483	Qiu F	2017-04-20	Nat Commun	A genome-wide association study identifies six novel risk loci for primary biliary cholangitis.	Primary biliary cholangitis	1,122 Han Chinese ancestry cases, 4,036 Han Chinese ancestry controls	907 Han Chinese ancestry cases, 2,127 Han Chinese ancestry controls	4q24	NFKB1	rs1598856-G	0.474	2E-10		1.26	[1.17-1.35]	Illumina [776516]	N
1374	chr4	103449040	103449041	rs230534	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	2,495 East Asian ancestry cases, 4,283 East Asian ancestry controls	NA	4q24		rs230534-T	NR	5E-15		0.314396	[0.24-0.39] unit increase	NR [5275424] (imputed)	N
1374	chr4	103449040	103449041	rs230534	31672989	Lopez-Isac E	2019-10-31	Nat Commun	GWAS for systemic sclerosis identifies multiple risk loci and highlights fibrotic and vasculopathy pathways.	Systemic sclerosis	9,095 European ancestry cases, 17,584 European ancestry controls	NA	4q24	NFKB1	rs230534-T	0.34	5E-9		1.15		Illumina [4723365]	N
1374	chr4	103449040	103449041	rs230534	28062665	Kawashima M	2017-01-05	Hum Mol Genet	Genome-wide association studies identify PRKCB as a novel genetic susceptibility locus for primary biliary cholangitis in the Japanese population.	Primary biliary cholangitis	1,381 Japanese ancestry cases, 1,505 Japanese ancestry controls	512 Japanese ancestry cases, 6,512 Japanese ancestry controls	4q24	NFKB1	rs230534-T	0.325249169435216	1E-7		1.3360554	[1.199-1.489]	Affymetrix [425290]	N
1374	chr4	103449130	103449131	rs113473633	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	4q24		rs113473633-G	NR	1E-8		0.1786	[0.12-0.24] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1374	chr4	103449130	103449131	rs113473633	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	4q24		rs113473633-G	NR	4E-9		0.0338	[0.023-0.045] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
1374	chr4	103449130	103449131	rs113473633	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	4q24		rs113473633-A	0.974	3E-17				Affymetrix [10369434] (imputed)	N
1374	chr4	103449130	103449131	rs113473633	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	4q24		rs113473633-A	0.974	3E-9				Affymetrix [10369434] (imputed)	N
1374	chr4	103449130	103449131	rs113473633	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	4q24	NFKB1	rs113473633-G	0.025906	1E-10		0.046344765	[0.032-0.061] unit decrease	Affymetrix [93095623] (imputed)	N
1374	chr4	103449130	103449131	rs113473633	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	4q24	NFKB1	rs113473633-G	0.025895	2E-16		0.06045135	[0.046-0.075] unit decrease	Affymetrix [93095623] (imputed)	N
1374	chr4	103449130	103449131	rs113473633	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	4q24	NFKB1	rs113473633-G	0.025913	2E-9		0.043864664	[0.03-0.058] unit decrease	Affymetrix [93095623] (imputed)	N
1374	chr4	103449130	103449131	rs113473633	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	4q24	NFKB1	rs113473633-G	0.02591	7E-18		0.06246349	[0.048-0.077] unit decrease	Affymetrix [93095623] (imputed)	N
1374	chr4	103449130	103449131	rs113473633	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q24	NR	rs113473633-G	0.024586	3E-13				Affymetrix, Illumina [24649327] (imputed)	N
1374	chr4	103449130	103449131	rs113473633	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	4q24	NR	rs113473633-G	0.025546	3E-16		0.050832	[0.039-0.063] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1374	chr4	103449130	103449131	rs113473633	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q24	NR	rs113473633-G	0.0252464	5E-19				Affymetrix, Illumina [19872809] (imputed)	N
1374	chr4	103449130	103449131	rs113473633	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	4q24	NR	rs113473633-G	0.026223	3E-22		0.063217	[0.05-0.076] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
1374	chr4	103449130	103449131	rs113473633	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	4q24	NFKB1	rs113473633-G	0.0221276	1E-8		0.17855276	[0.12-0.24] unit decrease	Affymetrix [7288503] (imputed)	N
1374	chr4	103449130	103449131	rs113473633	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	4q24		rs113473633-?	NR	7E-11				NR [~ 8900000] (imputed)	N
1374	chr4	103449130	103449131	rs113473633	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	4q24		rs113473633-?	NR	1E-11				NR [~ 8900000] (imputed)	N
1374	chr4	103449130	103449131	rs113473633	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	4q24		rs113473633-?	NR	5E-16				NR [~ 8900000] (imputed)	N
1374	chr4	103449130	103449131	rs113473633	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	4q24	NFKB1	rs113473633-G	0.0281	9E-11		0.07444892	[0.052-0.097] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1374	chr4	103449130	103449131	rs113473633	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	4q24	NFKB1	rs113473633-G	0.028	5E-9		0.06737209	[0.045-0.09] unit increase	Affymetrix [~ 2500000] (imputed)	N
1374	chr4	103449130	103449131	rs113473633	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	4q24	NFKB1	rs113473633-G	0.0281	6E-9		0.06656886	[0.044-0.089] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1374	chr4	103449130	103449131	rs113473633	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	4q24	NFKB1	rs113473633-G	0.028	1E-10		0.07410854	[0.052-0.097] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1374	chr4	103449130	103449131	rs113473633	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	4q24	NFKB1	rs113473633-G	0.0281	9E-12		0.07830585	[0.056-0.101] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1374	chr4	103450082	103450083	rs230533	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q24	NR	rs230533-G	0.659264	2E-19				Affymetrix, Illumina [24246363] (imputed)	N
1374	chr4	103457417	103457418	rs230529	22479419	Liou YJ	2012-03-27	PLoS One	Genome-wide association study of treatment refractory schizophrenia in Han Chinese.	Schizophrenia (treatment resistant)	522 Han Chinese ancestry cases, 806 Han Chinese ancestry controls	273 Han Chinese ancestry cases	4q24	NFKB1	rs230529-T	0.47	2E-7		1.45	[1.26-1.66]	Affymetrix [694436]	N
1374	chr4	103458177	103458178	rs230527	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	4q24		rs230527-G	NR	2E-19		0.0188	[0.015-0.023] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
1374	chr4	103458876	103458877	rs230525	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	4q24		rs230525-?	NR	3E-11				NR [~ 8900000] (imputed)	N
1374	chr4	103461727	103461727	rs3836561	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	4q24	NR	rs3836561-I	0.652129	6E-20		0.019014	[0.015-0.023] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1374	chr4	103462037	103462038	rs230523	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	4q24	NFKB1	rs230523-T	0.67	5E-14		1.07	[1.06-1.08]	Illumina [at least 560000] (imputed)	N
1374	chr4	103462037	103462038	rs230523	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	4q24	NFKB1	rs230523-?	NR	5E-14		1.067	[1.050-1.086]	Illumina [13757430] (imputed)	N
1374	chr4	103468517	103468518	rs93059	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation Hannum age acceleration	34,449 European ancestry individuals, 6,148 African American individuals	NA	4q24	NR	rs93059-?	NR	9E-13				Affymetrix, Illumina [6210504] (imputed)	N
1374	chr4	103468517	103468518	rs93059	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation Hannum age acceleration	34,449 European ancestry individuals	NA	4q24	NR	rs93059-A	0.4402	3E-9		0.1804	[0.12-0.24] unit increase	Affymetrix, Illumina [7565493] (imputed)	N
1374	chr4	103474767	103474768	rs230511	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	4q24	NFKB1	rs230511-C	0.65189	2E-16		0.0195319	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1374	chr4	103478264	103478265	rs230509	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	4q24	NFKB1	rs230509-A	0.651668	4E-15		0.018451877	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1374	chr4	103478264	103478265	rs230509	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	4q24	NFKB1	rs230509-A	0.651613	7E-22		0.022662967	[0.018-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1374	chr4	103481560	103481561	rs230504	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic disease (asthma, hay fever or eczema)	106,772 European ancestry cases, 239,773 European ancestry controls	83,335 cases, 34,934 controls	4q24	NR	rs230504-C	0.6437	2E-9		1.0349823	[1.02-1.05]	Affymetrix [15688218] (imputed)	N
1374	chr4	103481560	103481561	rs230504	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	4q24		rs230504-?	NR	5E-14				NR [~ 8900000] (imputed)	N
1374	chr4	103482452	103482453	rs60371688	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Albumin-globulin ratio	98,626 Japanese ancestry individuals	NA	4q24	NFKB1	rs60371688-?	NR	1E-12		0.03614	[0.026-0.046] unit decrease novel	Illumina [6108953] (imputed)	N
1374	chr4	103491862	103491863	rs230501	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	4q24	NFKB1	rs230501-C	0.633961	1E-10		0.020501785	[0.014-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1374	chr4	103491862	103491863	rs230501	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	4q24	NFKB1	rs230501-C	0.6347	1E-14		0.02852236	[0.021-0.036] unit increase	Affymetrix [~ 2500000] (imputed)	N
1374	chr4	103492668	103492669	rs230503	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	4q24	NFKB1	rs230503-A	0.651984	4E-9		0.013892256	[0.0093-0.0185] unit increase	Affymetrix [93095623] (imputed)	N
1374	chr4	103492668	103492669	rs230503	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	4q24	NFKB1	rs230503-A	0.65209	6E-17		0.019663446	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1374	chr4	103492668	103492669	rs230503	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	4q24	NFKB1	rs230503-A	0.652086	4E-20		0.02161434	[0.017-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1374	chr4	103495531	103495532	rs230539	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	4q24	NFKB1	rs230539-G	0.643594	7E-9		0.0134424	[0.0089-0.0179] unit increase	Affymetrix [93095623] (imputed)	N
1374	chr4	103496666	103496667	rs230540	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	4q24	NFKB1	rs230540-T	0.643472	7E-16		0.01888965	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1374	chr4	103496666	103496667	rs230540	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	4q24	NFKB1	rs230540-T	0.643467	2E-19		0.021105824	[0.017-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1374	chr4	103496666	103496667	rs230540	32231244	Xie J	2020-03-30	Nat Commun	The genetic architecture of membranous nephropathy and its potential to improve non-invasive diagnosis.	Membranous nephropathy	2,150 European ancestry cases, 5,829 European ancestry controls, 1,612 East Asian ancestry cases, 1,970 East Asian ancestry controls	826 Chinese ancestry cases, 1,239 Chinese ancestry controls	4q24	NFKB1	rs230540-C	NR	3E-12		1.25	[1.17-1.33]	Illumina [~ 7000000] (imputed)	N
1374	chr4	103496666	103496667	rs230540	32231244	Xie J	2020-03-30	Nat Commun	The genetic architecture of membranous nephropathy and its potential to improve non-invasive diagnosis.	Membranous nephropathy	2,150 European ancestry cases, 5,829 European ancestry controls	NA	4q24	NFKB1	rs230540-C	0.32	8E-7		1.25	[1.14-1.36]	Illumina [~ 7000000] (imputed)	N
1374	chr4	103496666	103496667	rs230540	32231244	Xie J	2020-03-30	Nat Commun	The genetic architecture of membranous nephropathy and its potential to improve non-invasive diagnosis.	Membranous nephropathy	1,612 East Asian ancestry cases, 1,970 East Asian ancestry controls	NA	4q24	NFKB1	rs230540-C	0.35	2E-61		1.24	[1.14-1.36]	Illumina [~ 7000000] (imputed)	N
1374	chr4	103498454	103498455	rs230542	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	4q24	NR	rs230542-C	0.644799	3E-10		0.013166	[0.0091-0.0173] SD unit increase	Affymetrix, Illumina [50282193] (imputed)	N
1374	chr4	103502761	103502762	rs11097789	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	4q24	NFKB1	rs11097789-C	0.3566	1E-9		0.02248531	[0.015-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1374	chr4	103503823	103503824	rs4699030	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	4q24		rs4699030-C	0.584546	6E-11		1.0285442	[1.02-1.04]	Affymetrix, Illumina [9851866] (imputed)	N
1374	chr4	103508702	103508703	rs4648045	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	4q24	NFKB1	rs4648045-C	0.3742	2E-21		0.03499196	[0.028-0.042] unit increase	Affymetrix [~ 2500000] (imputed)	N
1374	chr4	103511113	103511114	rs3774959	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Ulcerative colitis	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls	4q24	NFKB1, MANBA	rs3774959-A	0.358	4E-12		1.118	[1.077-1.159]	Affymetrix, Illumina [1230000] (imputed)	N
1374	chr4	103514740	103514741	rs4648050	30013184	Waage J	2018-07-16	Nat Genet	Genome-wide association and HLA fine-mapping studies identify risk loci and genetic pathways underlying allergic rhinitis.	Allergic sensitization	8,040 European ancestry cases, 16,441 European ancestry controls	NA	4q24	NFKB1	rs4648050-T	0.66	2E-8		1.1363636	[1.09-1.19]	Affymetrix, Illumina [16531985] (imputed)	N
1374	chr4	103515054	103515055	rs4648052	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (multivariate analysis)	477,968 European ancestry individuals	NA	4q24	NFKB1	rs4648052-G	0.633	7E-9		0.025	[0.017-0.033] unit decrease	NR [NR] (imputed)	N
1374	chr4	103515054	103515055	rs4648052	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (age of onset)	117,130 European ancestry individuals	NA	4q24	NFKB1	rs4648052-G	0.633	7E-9		0.025	[0.017-0.033] unit decrease	NR [7647814] (imputed)	N
1374	chr4	103525349	103525350	rs12509403	30013184	Waage J	2018-07-16	Nat Genet	Genome-wide association and HLA fine-mapping studies identify risk loci and genetic pathways underlying allergic rhinitis.	Allergic rhinitis	59,762 European and unknown ancestry cases, 152,358 European and unknown ancestry controls	60,720 European ancestry cases, 618,527 European ancestry controls	4q24	MANBA, NFKB1	rs12509403-C	0.6785	1E-15		1.0416667	[1.03-1.05]	Affymetrix, Illumina, Perlegen [16531985] (imputed)	N
1374	chr4	103536412	103536413	rs4648133	30247649	Gonzalez-Serna D	2018-09-21	Rheumatology (Oxford)	Analysis of the genetic component of systemic sclerosis in Iranian and Turkish populations through a genome-wide association study.	Systemic sclerosis	764 Middle Eastern ancestry cases, 1,343 Middle Eastern ancestry controls	NA	4q24	NFKB1	rs4648133-C	NR	3E-7		1.47	[1.27-1.7]	Illumina [5698748] (imputed)	N
1374	chr4	103537591	103537592	rs151134704	29124443	Yasukochi Y	2017-11-09	Mol Genet Genomics	Identification of CDC42BPG as a novel susceptibility locus for hyperuricemia in a Japanese population.	Serum uric acid levels	5,847 Japanese ancestry individuals	NA	4q24	NFKB1	rs151134704-?	9.97606E-5	2E-16				Illumina [~ 244000]	N
1374	chr4	103537591	103537592	rs151134704	29124443	Yasukochi Y	2017-11-09	Mol Genet Genomics	Identification of CDC42BPG as a novel susceptibility locus for hyperuricemia in a Japanese population.	Estimated glomerular filtration rate	5,636 Japanese ancestry individuals	NA	4q24	NFKB1	rs151134704-?	9.65997E-5	2E-16				Illumina [~ 244000]	N
1374	chr4	103537591	103537592	rs151134704	29124443	Yasukochi Y	2017-11-09	Mol Genet Genomics	Identification of CDC42BPG as a novel susceptibility locus for hyperuricemia in a Japanese population.	Creatinine levels	5,636 Japanese ancestry individuals	NA	4q24	NFKB1	rs151134704-?	9.65997E-5	2E-16				Illumina [~ 244000]	N
1374	chr4	103538902	103538903	rs371681307	28604731	Hammerschlag AR	2017-06-12	Nat Genet	Genome-wide association analysis of insomnia complaints identifies risk genes and genetic overlap with psychiatric and metabolic traits.	Chronotype	101,185 European ancestry individuals	NA	4q24	NR	rs371681307-T	0.042	4E-8		0.062	[0.04-0.084] unit decrease	Affymetrix [at least 12428592] (imputed)	N
1374	chr4	103538910	103538911	rs11726195	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	4q24	NFKB1	rs11726195-G	0.521472	8E-34		0.02692933	[0.023-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
1374	chr4	103538910	103538911	rs11726195	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	4q24	NFKB1	rs11726195-G	0.521504	8E-11		0.019935844	[0.014-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1374	chr4	103540779	103540780	rs7674640	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	8,021 European ancestry cases, 16,489 European ancestry controls	NA	4q24		rs7674640-C	NR	2E-22		0.216421	[0.17-0.26] unit decrease	NR [5054572] (imputed)	N
1374	chr4	103546137	103546138	rs62327181	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	4q24		rs62327181-C	0.333454	3E-30		0.027044892	[0.022-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
1374	chr4	103546303	103546304	rs17033015	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	4q24	NR	rs17033015-A	0.4244	7E-10		1.038	[1.026-1.05]	Affymetrix [15688218] (imputed)	N
1374	chr4	103546303	103546304	rs17033015	30643196	Hitomi Y	2019-01-14	Sci Rep	POGLUT1, the putative effector gene driven by rs2293370 in primary biliary cholangitis susceptibility locus chromosome 3q13.33.	Primary biliary cholangitis	1,855 Japanese ancestry cases, 1,719 Japanese ancestry controls	NA	4q24	NFKB1, MANBA	rs17033015-?	NR	9E-10		1.35		Affymetrix [NR] (imputed)	N
1375	chr4	103547928	103547929	rs186108786	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Scarlet fever	6,812 European ancestry cases, 113,837 European ancestry controls	NA	4q24	NR	rs186108786-?	NR	4E-6		0.9716	[0.52-1.43] unit increase	Illumina [at least 560000] (imputed)	N
1375	chr4	103550247	103550248	rs11724614	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	4q24		rs11724614-A	0.479	1E-34				Affymetrix [10369434] (imputed)	N
1375	chr4	103551602	103551603	rs7665090	25854761	Zuo X	2015-04-09	Nat Commun	Whole-exome SNP array identifies 15 new susceptibility loci for psoriasis.	Psoriasis	11,245 Han Chinese ancestry cases, 11,177 Han Chinese ancestry controls	6,369 Han Chinese ancestry cases, 13,969 Han Chinese ancestry controls	4q24	intergenic	rs7665090-G	NR	1E-6	(fixed)	1.0714668		Illumina [87827]	N
1375	chr4	103551602	103551603	rs7665090	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	4q24	MANBA	rs7665090-G	0.53	1E-8		1.09		Illumina [161311]	N
1375	chr4	103551602	103551603	rs7665090	22961000	Liu JZ	2012-10-01	Nat Genet	Dense fine-mapping study identifies new susceptibility loci for primary biliary cirrhosis.	Primary biliary cirrhosis	2,861 British and Irish ancestry cases, 8,514 British and Irish ancestry controls	NA	4q24	MANBA, NFKB1	rs7665090-G	0.52	8E-14		1.26	[1.19-1.34]	Illumina [237619] (imputed)	N
1375	chr4	103551602	103551603	rs7665090	21399635	Mells GF	2011-03-13	Nat Genet	Genome-wide association study identifies 12 new susceptibility loci for primary biliary cirrhosis.	Primary biliary cholangitis	1,840 European ancestry cases, 5,163 European ancestry controls and (Liu et al)	620 European ancestry cases, 2,514 European ancestry controls	4q24	NFKB1	rs7665090-C	0.52	4E-12		1.26	[1.18-1.34]	Illumina [507467]	N
1375	chr4	103552429	103552430	rs12644381	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	4q24		rs12644381-A	0.479	9E-32				Affymetrix [10369434] (imputed)	N
1375	chr4	103552708	103552709	rs1054037	26394269	Cordell HJ	2015-09-22	Nat Commun	International genome-wide meta-analysis identifies new primary biliary cirrhosis risk loci and targetable pathogenic pathways.	Primary biliary cholangitis	2,764 European ancestry cases, 10,475 European ancestry controls	3,716 European ancestry cases,  4,261 European ancestry controls	4q24	MANBA, NFKB1, CISD2	rs1054037-T	0.52	8E-10		1.22	NR	Illumina [1143634] (imputed)	N
1375	chr4	103554330	103554330	rs5860730	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	4q24	NR	rs5860730-CT	0.501918	2E-11		0.00837524	[0.0058-0.011] unit increase	Affymetrix [16578495] (imputed)	N
1375	chr4	103554721	103554722	rs5026470	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q24	NR	rs5026470-G	0.513408	6E-84				Affymetrix, Illumina [23472807] (imputed)	N
1375	chr4	103554721	103554722	rs5026470	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	4q24	NR	rs5026470-G	0.517317	1E-84		0.036884	[0.033-0.041] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1375	chr4	103554772	103554773	rs5026472	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	4q24		rs5026472-G	NR	2E-41		0.0287	[0.025-0.033] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
1375	chr4	103554772	103554773	rs5026472	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	4q24	MANBA	rs5026472-G	0.523	1E-31		0.04223869	[0.035-0.049] unit increase	Affymetrix [~ 2500000] (imputed)	N
1375	chr4	103554792	103554793	rs5026473	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	4q24		rs5026473-A	0.477	2E-31				Affymetrix [10369434] (imputed)	N
1375	chr4	103554792	103554793	rs5026473	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	4q24		rs5026473-A	0.477	3E-41				Affymetrix [10369434] (imputed)	N
1375	chr4	103554930	103554931	rs33969351	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	4q24	MANBA	rs33969351-T	0.523478	3E-57		0.03583512	[0.031-0.04] unit increase	Affymetrix [93095623] (imputed)	N
1375	chr4	103558950	103558951	rs6533022	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	8,021 European ancestry cases, 16,489 European ancestry controls, 2,495 East Asian ancestry cases, 4,283 East Asian ancestry controls	NA	4q24		rs6533022-C	NR	2E-32		0.226996	[0.19-0.26] unit increase	NR [2787054] (imputed)	N
1375	chr4	103561708	103561709	rs228611	26831199	Pattaro C	2016-01-21	Nat Commun	Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function.	Glomerular filtration rate (creatinine)	133,413 European ancestry individuals	42,166 European ancestry individuals, up to 16,471 African ancestry individuals, up to 42,296 Asian ancestry individuals	4q24	NFKB1	rs228611-A	0.48	4E-12	(EA)	0.0056	[0.004-0.0072] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1375	chr4	103575066	103575067	rs179195	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	4q24	MANBA	rs179195-T	0.49	1E-10		6.44	z-score increase	Affymetrix [4311822] (imputed)	N
1375	chr4	103578636	103578637	rs228614	27992413	Ji SG	2016-12-19	Nat Genet	Genome-wide association study of primary sclerosing cholangitis identifies new risk loci and quantifies the genetic relationship with inflammatory bowel disease.	Primary sclerosing cholangitis	2,871 European ancestry cases, 12,019 European ancestry controls	1,925 European ancestry cases, 7,936 European ancestry controls	4q24	NFKB1, MANBA	rs228614-G	0.52	1E-7		1.13	[1.08-1.18]	Affymetrix, Illumina [7891602] (imputed)	N
1375	chr4	103578636	103578637	rs228614	21833088	Sawcer S	2011-08-11	Nature	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	4q24	NFKB1, MANBA	rs228614-G	NR	1E-7		1.09	[1.07-1.1]	Illumina [465434]	N
1375	chr4	103593897	103593898	rs227275	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	4q24	MANBA	rs227275-C	0.56	4E-11		1.034	[1.02-1.04]	Affymetrix, Illumina [8307659] (imputed)	N
1375	chr4	103607252	103607253	rs227283	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma and attention deficit hyperactivity disorder	46,802 European ancestry asthma cases, 19,099 European ancestry attention deficit hyperactivity disorder cases, 381,675 European ancestry controls	NA	4q24	CISD2, MANBA, SLC9B1, UBE2D3	rs227283-?	NR	3E-8				Affymetrix [up to 8274727] (imputed)	N
1375	chr4	103612042	103612043	rs227370	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	4q24	MANBA	rs227370-C	0.675	8E-113	(Beta-mannosidase, MANBA.6382.17.3)	0.56	[0.52-0.6] unit decrease	Affymetrix [10572788] (imputed)	N
1375	chr4	103620384	103620385	rs227378	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Major depressive disorder vs ADHD (ordinary least squares (OLS))	170,756 MDD cases, 19,099 ADHD cases	NA	4q24		rs227378-?	NR	5E-8		0.0124	NR unit decrease	NR [5568121] (imputed)	N
1375	chr4	103620384	103620385	rs227378	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	ADHD vs obsessive compulsive disorder (ordinary least squares (OLS))	19,099 ADHD cases, 2,688 OCD cases	NA	4q24		rs227378-?	NR	2E-8		0.0235	NR unit decrease	NR [5627061] (imputed)	N
1375	chr4	103640757	103640758	rs223502	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	4q24	NR	rs223502-C	NR	2E-13		0.0193	[0.014-0.024] unit increase	Affymetrix [9000000] (imputed)	N
1375	chr4	103640757	103640758	rs223502	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	4q24	NR	rs223502-C	NR	7E-14		0.0196	[0.015-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
1375	chr4	103640757	103640758	rs223502	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	4q24	NR	rs223502-C	NR	6E-14		0.0197	[0.015-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
1375	chr4	103651440	103651441	rs17254118	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	4q24	NR	rs17254118-C	0.981103	5E-24		0.109118	[0.087-0.131] unit increase	Affymetrix [16577424] (imputed)	N
1375	chr4	103651961	103651962	rs223498	26051272	Fischer A	2015-09-15	Am J Respir Crit Care Med	Identification of Immune-Relevant Factors Conferring Sarcoidosis Genetic Risk.	Sarcoidosis	1,726 European ancestry cases, 5,482 European ancestry controls	1,912 European ancestry cases, 5,938 European ancestry controls, 781 African American cases, 876 African American controls	4q24	NFKB, MANBA	rs223498-C	0.47	1E-9	(EA)	1.19	[1.12-1.26]	Illumina [128705]	N
1376	chr4	103679116	103679117	rs223490	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	4q24		rs223490-T	NR	1E-8		0.0111	[0.0074-0.0148] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
1376	chr4	103680983	103680984	rs223489	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q24	MANBA	rs223489-A	0.6615625	3E-69	(MANBA, 6382_17_3)	0.44713068	[0.4-0.5] unit decrease	Illumina [> 1000000] (imputed)	N
1376	chr4	103684952	103684953	rs223486	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting glucose	151,188 European ancestry individuals	NA	4q24	MANBA, UBE2D3	rs223486-C	0.507	4E-8		0.0135	[0.0086-0.0184] unit increase	Affymetrix, Illumina [8700000] (imputed)	N
1376	chr4	103698785	103698786	rs223471	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	4q24	LOC102723704	rs223471-C	0.3408	1E-25		0.0028	[0.0022-0.0034] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
1376	chr4	103710929	103710930	rs223454	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	4q24	MANBA, UBE2D3	rs223454-G	0.52	6E-9		5.83	z-score increase	Affymetrix [4312306] (imputed)	N
1376	chr4	103712251	103712252	rs188539658	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	4q24	NR	rs188539658-C	0.983799	3E-11		0.0532722	[0.037-0.069] unit increase	Affymetrix [16583148] (imputed)	N
1376	chr4	103736837	103736838	rs56095122	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	4q24		rs56095122-G	NR	4E-10		0.0565	[0.039-0.074] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1376	chr4	103738971	103738972	rs223401	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MANBA	5,358 Icelandic ancestry individuals	NA	4q24		rs223401-C	0.3238	5E-106		0.416574	[0.38-0.45] unit increase	Illumina [7506463] (imputed)	N
1376	chr4	103738971	103738972	rs223401	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	4q24	KRT8P46, LRRC37A15P, MANBA, RP11-10L12.4, RP11-10L12.2	rs223401-C	0.3627	4E-10		6.26	NR z score increase	Illumina [26237160] (imputed)	N
1376	chr4	103738971	103738972	rs223401	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	4q24	NFKB1	rs223401-T	0.642	2E-8		0.1	[-0.09208-0.29208] ml/min/1.73m2 decrease	Affymetrix, Illumina [at least 5248638] (imputed)	N
1376	chr4	103748875	103748875	rs34654981	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	4q24		rs34654981-TCTC	NR	3E-14		0.0176	[0.013-0.022] unit decrease	Affymetrix, Illumina [20538307] (imputed)	N
1376	chr4	103754302	103754302	rs34591181	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	4q24	NR	rs34591181-GT	0.319	2E-100	(Beta-mannosidase, MANBA.6382.17.3)	0.55	[0.49-0.61] unit increase	Affymetrix [10572788] (imputed)	N
1376	chr4	103757322	103757323	rs223376	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	4q24		rs223376-A	NR	1E-29		0.0182	[0.015-0.021] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
1376	chr4	103766719	103766720	rs74332078	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	4q24	NR	rs74332078-?	NR	2E-7		5.248	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1376	chr4	103769303	103769304	rs223361	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	4q24	UBE2D3	rs223361-T	0.6642	4E-21		0.1522	[0.12-0.18] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1376	chr4	103777391	103777392	rs223351	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	4q24		rs223351-A	NR	4E-13		0.0147	[0.011-0.019] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
1376	chr4	103780495	103780496	rs223346	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs ADHD (ordinary least squares (OLS))	40,675 schizophrenia cases, 19,099 ADHD cases	NA	4q24		rs223346-?	NR	8E-10		0.0211	NR unit increase	NR [4428082] (imputed)	N
1376	chr4	103781579	103781585	rs56375208	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	4q24	NR	rs56375208-G	0.109	7E-46	(Beta-mannosidase, MANBA.6382.17.3)	0.63	[0.55-0.71] unit increase	Affymetrix [10572788] (imputed)	N
1376	chr4	103790185	103790186	rs223332	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs autism spectrum disorder (ordinary least squares (OLS))	40,675 schizophrenia cases, 18,381 autism spectrum disorder cases	NA	4q24		rs223332-?	NR	3E-8		0.0167	NR unit increase	NR [4484088] (imputed)	N
1376	chr4	103802164	103802165	rs223320	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	4q24	NR	rs223320-T	NR	3E-11		0.0248	[0.018-0.032] unit increase	Affymetrix [9000000] (imputed)	N
1377	chr4	103812498	103812499	rs223308	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	4q24	CISD2	rs223308-A	0.5184	3E-21		0.0027	[0.0021-0.0033] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
1377	chr4	103827487	103827488	rs11722779	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	4q24	SLC9B1	rs11722779-G	NR	4E-8		1.0515248	[1.03-1.07]	Illumina [6627481] (imputed)	N
1377	chr4	103827487	103827488	rs11722779	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	4q24	BDH2, CENPE, CISD2, KRT8P46, LRRC37A15P, NHEDC1, SLC9B1	rs11722779-G	NR	3E-8		1.0515248	[1.03-1.07]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1377	chr4	103830695	103830696	rs6533030	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	4q24		rs6533030-C	NR	1E-14		0.0155	[0.012-0.019] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
1377	chr4	103842030	103842031	rs3974479	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Creatinine levels	110,051 European ancestry individuals	NA	4q24		rs3974479-A	0.522083	1E-14		0.0274689	[0.02-0.034] unit increase	NR [11722792] (imputed)	N
1377	chr4	103864659	103864660	rs9884397	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	4q24		rs9884397-G	0.552815	4E-8		0.0219063	[0.014-0.03] unit increase	NR [11722792] (imputed)	N
1377	chr4	103864659	103864660	rs9884397	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	4q24		rs9884397-G	0.552815	2E-8		0.0221668	[0.014-0.03] unit decrease	NR [11722792] (imputed)	N
1377	chr4	103864659	103864660	rs9884397	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	4q24		rs9884397-G	0.552815	2E-8		0.0222355	[0.014-0.03] unit decrease	NR [11722792] (imputed)	N
1377	chr4	103869784	103869785	rs142803285	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Myringotomy	4,138 European ancestry cases, 85,089 European ancestry controls	NA	4q24	NR	rs142803285-?	NR	5E-6		0.795	[0.48-1.11] unit increase	Illumina [at least 560000] (imputed)	N
1377	chr4	103877990	103877991	rs3974481	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	4q24	SLC9B1	rs3974481-T	0.512711	2E-15		0.00179372	[0.0013-0.0022] unit increase	Affymetrix [13995440] (imputed)	N
1377	chr4	103890979	103890980	rs10006327	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	4q24	SLC9B1	rs10006327-C	0.49	4E-8		1.04	[1.02-1.05]	Illumina [34740186] (imputed)	N
1377	chr4	103895222	103895223	rs7681002	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	4q24		rs7681002-?	NR	2E-13				NR [~ 8900000] (imputed)	N
1377	chr4	103895316	103895317	rs7659468	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	4q24	NR	rs7659468-G	0.4984	1E-14		0.0287	[0.021-0.036] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1377	chr4	103895397	103895398	rs7659650	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	4q24		rs7659650-T	0.509388	3E-8		0.0222113	[0.014-0.03] unit increase	NR [11722792] (imputed)	N
1377	chr4	103895397	103895398	rs7659650	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	4q24		rs7659650-T	0.509388	1E-8		0.0227927	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
1377	chr4	103895397	103895398	rs7659650	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	4q24		rs7659650-T	0.509482	3E-8		0.0217497	[0.014-0.029] unit decrease	NR [11722792] (imputed)	N
1377	chr4	103911780	103911781	rs6533052	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	4q24	SLC9B1	rs6533052-A	NR	7E-16		1.0927	NR	Affymetrix, Illumina [8278136] (imputed)	N
1377	chr4	103915617	103915618	rs3960788	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	4q24	SLC9B1	rs3960788-C	0.42	2E-12		1.05	[1.04-1.07]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1377	chr4	103915617	103915618	rs3960788	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	4q24	SLC9B1	rs3960788-C	0.41	4E-11	(EA)	1.05	[1.04-1.07]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1377	chr4	103919064	103919065	rs9994654	34437536	Akhtari FS	2021-08-26	PLoS Genet	High-throughput screening and genome-wide analyses of 44 anticancer drugs in the 1000 Genomes cell lines reveals an association of the NQO1 gene with the response of multiple anticancer drugs.	Response to fluoro-deoxyuridine	680 lymphoblastoid cell lines from Han Chinese ancestry, Japanese ancestry, Kenyan ancestry, Mexican ancestry, Tuscan ancestry, Yoruban ancestry, British ancestry, Columbian ancestry individuals	NA	4q24		rs9994654-?	NR	6E-8				Illumina [1510701]	N
1377	chr4	103932555	103932556	rs7695096	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	4q24	NR	rs7695096-C	0.5208	1E-16		0.0381	[0.029-0.047] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1377	chr4	103937932	103937933	rs7676765	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	4q24	NR	rs7676765-?	NR	3E-10		1.0544297	[1.04-1.07]	Affymetrix, Illumina [12447948] (imputed)	N
1378	chr4	103942713	103942714	rs10516497	34437536	Akhtari FS	2021-08-26	PLoS Genet	High-throughput screening and genome-wide analyses of 44 anticancer drugs in the 1000 Genomes cell lines reveals an association of the NQO1 gene with the response of multiple anticancer drugs.	Response to fluoro-deoxyuridine	680 lymphoblastoid cell lines from Han Chinese ancestry, Japanese ancestry, Kenyan ancestry, Mexican ancestry, Tuscan ancestry, Yoruban ancestry, British ancestry, Columbian ancestry individuals	NA	4q24		rs10516497-?	NR	2E-7				Illumina [1510701]	N
1378	chr4	103956955	103956956	rs13130741	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	4q24	SLC9B2	rs13130741-T	0.485206	7E-9		0.034977693	[0.023-0.047] unit decrease	Affymetrix [7288503] (imputed)	N
1378	chr4	103975059	103975060	rs7688014	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	4q24	SLC9B2	rs7688014-T	0.476	2E-12		0.0023	[0.0017-0.0029] unit decrease	Affymetrix [NR] (imputed)	N
1378	chr4	103975059	103975060	rs7688014	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	4q24	NR	rs7688014-C	NR	3E-6		1.0526316	[NR]	Illumina [7158791] (imputed)	N
1378	chr4	103978427	103978428	rs200777151	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in non-diabetics	152,624 European ancestry individuals, 36,369 African American individuals	NA	4q24	SLC9B2	rs200777151-T	0.577	1E-9		0.355	[0.24-0.47] unit decrease	Affymetrix [NR] (imputed)	N
1378	chr4	103981698	103981699	rs10715507	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	4q24	SLC9B2	rs10715507-G	0.4182	7E-13	(EA)	0.0025	[0.0019-0.0031] unit increase	Affymetrix [NR] (imputed)	N
1378	chr4	103988898	103988899	rs7674212	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	4q24	SLC9B2	rs7674212-T	0.408864361771549	6E-10		0.0465	[0.032-0.061] unit decrease	NR [5035015] (imputed)	N
1378	chr4	103988898	103988899	rs7674212	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	4q24	CISD2	rs7674212-G	0.58	7E-9	(EA)	1.07	[1.04-1.09]	Affymetrix, Illumina [NR] (imputed)	N
1378	chr4	104008476	104008477	rs58477215	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	4q24		rs58477215-T	NR	5E-8		0.0127	[0.0082-0.0172] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
1378	chr4	104008476	104008477	rs58477215	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	4q24	BDH2	rs58477215-T	0.2099	6E-9		0.1437	[0.095-0.192] mmHg increase	Affymetrix [NR] (imputed)	N
1378	chr4	104032367	104032368	rs13114629	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	4q24	NR	rs13114629-?	NR	9E-7		4.903	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1378	chr4	104054685	104054686	rs2720460	28604732	Wang Z	2017-06-12	Nat Genet	Meta-analysis of five genome-wide association studies identifies multiple new loci associated with testicular germ cell tumor.	Testicular germ cell tumor	3,558 European ancestry cases, 13,970 European ancestry controls	NA	4q24	CENPE	rs2720460-G	0.41	1E-16		1.2820514	[1.20-1.35]	Illumina [9210350] (imputed)	N
1378	chr4	104054685	104054686	rs2720460	28604728	Litchfield K	2017-06-12	Nat Genet	Identification of 19 new risk loci and potential regulatory mechanisms influencing susceptibility to testicular germ cell tumor.	Testicular germ cell tumor	5,518 European ancestry cases, 19,055 European ancestry controls	1,801 European ancestry cases, 4,027 European ancestry controls	4q24	CENPE	rs2720460-A	0.63	7E-20		1.26	[1.21-1.31]	Illumina [at least 371504] (imputed)	N
1378	chr4	104054685	104054686	rs2720460	25877299	Kristiansen W	2015-04-15	Hum Mol Genet	Two new loci and gene sets related to sex determination and cancer progression are associated with susceptibility to testicular germ cell tumor.	Testicular germ cell tumor	1,326 European ancestry cases, 6,687 European ancestry controls	710 European ancestry case-parent triads, 289 European ancestry cases, 290 European ancestry controls	4q24	CENPE	rs2720460-A	0.594	6E-12		1.32	[NR]	Illumina [610240]	N
1378	chr4	104054685	104054686	rs2720460	23666240	Ruark E	2013-05-12	Nat Genet	Identification of nine new susceptibility loci for testicular cancer, including variants near DAZL and PRDM14.	Testicular germ cell tumor	986 European ancestry cases, 4,946 European ancestry controls	1,064 European ancestry cases, 10,082 European ancestry controls	4q24	CENPE	rs2720460-A	0.61	2E-10		1.24	[1.12-1.36]	Illumina [307291]	N
1379	chr4	104137789	104137790	rs4699052	19483681	Rapley EA	2009-05-31	Nat Genet	A genome-wide association study of testicular germ cell tumor.	Testicular germ cell tumor	730 cases, 1,435 controls	571 cases, 1,806 controls	4q24	intergenic	rs4699052-C	0.61	2E-7		1.21	[1.05-1.39]	Illumina [307666]	N
1379	chr4	104140847	104140848	rs1580278	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	4q24	SLC9B1	rs1580278-C	0.4728	2E-10		1.04	[1.03-1.05]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1379	chr4	104158359	104158360	rs6821248	29967566	Roberts CH	2018-06-03	Mediators Inflamm	Pathway-Wide Genetic Risks in Chlamydial Infections Overlap between Tissue Tropisms: A Genome-Wide Association Scan.	Anti-chlamydia trachomatis IgG seropositivity	71 Dutch ancestry cases, 169 Dutch ancestry controls	NA	4q24	CENPE	rs6821248-G	0.747	9E-7		1.2658228		Illumina [9443221] (imputed)	N
1379	chr4	104166118	104166119	rs7659556	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Testicular cancer	713 European ancestry cases, 359,825 European ancestry controls	NA	4q24		rs7659556-T	NR	4E-8		1.37049	NR	Affymetrix [7846216] (imputed)	N
1379	chr4	104174306	104174307	rs201814405	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	4q24	NR	rs201814405-A	0.15211699999999995	4E-13		0.0335822	[0.024-0.043] unit increase	Affymetrix [16577313] (imputed)	N
1379	chr4	104174842	104174843	rs200911786	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	4q24	intergenic	rs200911786-A	0.1523	6E-9		0.0251	[0.017-0.034] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1379	chr4	104199921	104199922	rs1289231	31194736	Tiensuu H	2019-06-13	PLoS Genet	Risk of spontaneous preterm birth and fetal growth associates with fetal SLIT2.	Spontaneous preterm birth without premature rupture of membranes	101 Finnish ancestry infant cases, 419 Finnish ancestry infant controls	NA	4q24	CENPE, TACR3	rs1289231-?	NR	6E-6		3.29		Illumina [6778521] (imputed)	N
1380	chr4	104206457	104206458	rs146871688	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Myringotomy	4,138 European ancestry cases, 85,089 European ancestry controls	NA	4q24	NR	rs146871688-?	NR	3E-6		0.9222	[0.57-1.28] unit increase	Illumina [at least 560000] (imputed)	N
1380	chr4	104235668	104235669	rs13144764	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	4q24	CENPE	rs13144764-A	0.797635	5E-10		0.0152081	[0.01-0.02] unit increase	Affymetrix [NR] (imputed)	N
1380	chr4	104253888	104253889	rs62338910	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	4q24	CENPE	rs62338910-A	0.764896	4E-12		0.0156104	[0.011-0.02] unit decrease	Affymetrix [NR] (imputed)	N
1380	chr4	104257722	104257723	rs72668656	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	4q24	NR	rs72668656-A	NR	2E-11		0.0191	[0.014-0.025] unit increase	Affymetrix [9000000] (imputed)	N
1380	chr4	104257722	104257723	rs72668656	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	4q24	NR	rs72668656-A	NR	4E-12		0.0196	[0.014-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
1380	chr4	104257722	104257723	rs72668656	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	4q24	NR	rs72668656-A	NR	3E-12		0.0197	[0.014-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
1380	chr4	104267253	104267254	rs6844340	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	4q24		rs6844340-?	NR	1E-7				NR [~ 8900000] (imputed)	N
1380	chr4	104268556	104268557	rs58611096	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (late vs. average onset facial hair)	26,066 European ancestry late onset individuals, 161,175 European ancestry average onset individuals	NA	4q24		rs58611096-A	NR	2E-9		0.0073599	[0.005-0.0098] years increase	NR [7400000] (imputed)	N
1380	chr4	104268556	104268557	rs58611096	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (age at voice breaking MTAG)	205,354 European ancestry individuals	NA	4q24		rs58611096-A	NR	1E-10		0.022851013	[0.016-0.03] years increase	NR [7400000] (imputed)	N
1381	chr4	104358688	104358689	rs143962901	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mumps	31,227 European ancestry cases, 54,153 European ancestry controls	NA	4q24	NR	rs143962901-?	NR	4E-6		0.1697	[0.098-0.242] unit decrease	Illumina [at least 560000] (imputed)	N
1381	chr4	104371654	104371655	rs10016947	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	4q24	NR	rs10016947-C	0.0567	9E-6	(EA)	0.0611	[0.034-0.088] unit decrease	Illumina [~ 11800000] (imputed)	N
1381	chr4	104374595	104374596	rs10026360	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	4q24		rs10026360-?	NR	5E-17				NR [~ 8900000] (imputed)	N
1382	chr4	104491077	104491078	rs17289915	34337532	Fantus RJ	2021-05-25	Eur Urol Open Sci	Genetic Susceptibility for Low Testosterone in Men and Its Implications in Biology and Screening: Data from the UK Biobank.	Low testosterone levels	13,409 European ancestry male cases, 98,267 European ancestry male controls	4,426 European ancestry male cases, 32,800 European ancestry male controls	4q24	NR	rs17289915-G	0.01	9E-19		1.5	NR	NR [8853336] (imputed)	N
1382	chr4	104491077	104491078	rs17289915	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	4q24	RP11-297P16.3	rs17289915-G	NR	3E-8		0.0763475	[0.049-0.103] unit increase	Affymetrix [323123] (imputed)	N
1382	chr4	104577414	104577415	rs144292455	33637690	He L	2021-02-26	Transl Psychiatry	Exome-wide age-of-onset analysis reveals exonic variants in ERN1 and SPPL2C associated with Alzheimer's disease.	Alzheimer's disease (age of onset) in APOE e4 non-carriers	7,185 European ancestry individuals	5,416 European ancestry individuals	4q24		rs144292455-?	NR	7E-7		3.19		NR [98334]	N
1382	chr4	104577414	104577415	rs144292455	33637690	He L	2021-02-26	Transl Psychiatry	Exome-wide age-of-onset analysis reveals exonic variants in ERN1 and SPPL2C associated with Alzheimer's disease.	Alzheimer's disease (age of onset) (adjusted for APOE e4 carrier status)	10,216 European ancestry individuals	9,261 European ancestry individuals	4q24		rs144292455-?	NR	1E-6		3.32		NR [110450]	N
1382	chr4	104587976	104587977	rs1351623	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	4q24		rs1351623-?	NR	1E-21				NR [~ 8900000] (imputed)	N
1382	chr4	104587976	104587977	rs1351623	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	4q24		rs1351623-?	NR	6E-11				NR [~ 8900000] (imputed)	N
1382	chr4	104590005	104590005	rs565931739	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	4q24	NR	rs565931739-C	0.835743	3E-20		0.0388305	[0.031-0.047] unit increase	Affymetrix [16577313] (imputed)	N
1382	chr4	104590005	104590005	rs565931739	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	4q24	NR	rs565931739-C	0.835593	1E-29		0.0474364	[0.039-0.056] unit increase	Affymetrix [16577424] (imputed)	N
1382	chr4	104590005	104590005	rs565931739	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	4q24		rs565931739-?	NR	3E-12		0.0187828	[0.013-0.024] unit increase	Affymetrix [20259828] (imputed)	N
1383	chr4	104609387	104609388	rs10017280	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	4q24	NR	rs10017280-C	0.869807	1E-9		0.0122688	[0.0084-0.0161] unit increase	Affymetrix [16578495] (imputed)	N
1383	chr4	104616869	104616870	rs35518418	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	4q24	TACR3	rs35518418-C	NR	2E-9		0.0333661	[0.022-0.044] unit increase	Affymetrix [323123] (imputed)	N
1383	chr4	104628576	104628577	rs28650409	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	4q24	TACR3	rs28650409-T	NR	2E-13		0.032098	[0.024-0.041] unit increase	Affymetrix [323123] (imputed)	N
1383	chr4	104640934	104640935	rs3733632	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	4q24		rs3733632-G	0.380988	2E-11		0.0138973	[0.0098-0.018] unit increase	Illumina [13479295] (imputed)	N
1383	chr4	104640934	104640935	rs3733632	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	4q24	TACR3	rs3733632-?	NR	5E-12		0.020251794	[0.015-0.026] unit increase	Illumina [27896057] (imputed)	N
1383	chr4	104641063	104641064	rs112217694	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Menarche (age at onset)	76,831 European ancestry individuals	NA	4q24	TACR3, CXXC4	rs112217694-?	NR	3E-8		0.053	[0.072-0.034] unit decrease	Illumina [12039492]	N
1383	chr4	104641102	104641103	rs3733631	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	4q24	TACR3	rs3733631-C	0.15	5E-13		0.05	[0.036-0.064] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
1383	chr4	104641919	104641920	rs3775971	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	4q24	TACR3	rs3775971-C	NR	3E-9		0.0266328	[0.018-0.035] unit increase	Affymetrix [323858] (imputed)	N
1383	chr4	104659514	104659515	rs10014175	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	4q24		rs10014175-?	NR	6E-12				NR [~ 8900000] (imputed)	N
1383	chr4	104659603	104659604	rs17034046	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	4q24	TACR3	rs17034046-C	0.851532	1E-10		0.0166703	[0.012-0.022] unit increase	NR [13737936] (imputed)	N
1384	chr4	104753597	104753598	rs75853901	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	4q24	TACR3, CXXC4	rs75853901-G	NR	6E-6		0.6341	[0.36-0.91] unit increase	Illumina [at least 950000] (imputed)	N
1384	chr4	104766256	104766257	rs17034117	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	4q24	NR	rs17034117-?	NR	5E-8				Affymetrix [NR]	N
1384	chr4	104774697	104774698	rs115260227	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	4q24		rs115260227-?	NR	2E-32				NR [~ 8900000] (imputed)	N
1384	chr4	104780790	104780790	rs528845403	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	4q24	NR	rs528845403-A	0.989926	1E-12		0.0490919	[0.035-0.063] unit increase	Affymetrix [16578495] (imputed)	N
1384	chr4	104780790	104780790	rs528845403	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	4q24	NR	rs528845403-A	0.989972	4E-34		0.198847	[0.17-0.23] unit increase	Affymetrix [16577313] (imputed)	N
1384	chr4	104780790	104780790	rs528845403	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	4q24	NR	rs528845403-A	0.989903	1E-40		0.143125	[0.12-0.16] unit increase	Affymetrix [16583148] (imputed)	N
1384	chr4	104780790	104780790	rs528845403	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	4q24	NR	rs528845403-A	0.989989	2E-70		0.288565	[0.26-0.32] unit increase	Affymetrix [16577424] (imputed)	N
1384	chr4	104780790	104780790	rs528845403	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	4q24		rs528845403-?	NR	8E-11		0.0660313	[0.044-0.088] unit increase	Affymetrix [20259828] (imputed)	N
1384	chr4	104793164	104793165	rs12498303	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	4q24	CXXC4	rs12498303-?	NR	2E-6	(LPC 20:4)	0.18400474	[0.11-0.26] unit increase	Affymetrix [at least 2500000] (imputed)	N
1385	chr4	104920478	104920479	rs41427747	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	4q24	NR	rs41427747-?	NR	6E-7		0.3337	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1385	chr4	104932296	104932297	rs2134025	32959083	Adewuyi EO	2020-09-21	Hum Genet	Genetic analysis of endometriosis and depression identifies shared loci and implicates causal links with gastric mucosa abnormality.	Endometriosis or depression (pleiotropy)	17,054 endometriosis cases, 170,756 European ancestry depression cases, 191,858 controls, 329,443 European ancestry controls	NA	4q24	NR	rs2134025-A		1E-8		0.0282905	[0.019-0.038] unit increase	NR [6694342]	N
1385	chr4	104933752	104933753	rs10034259	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	4q24	NR	rs10034259-C	NR	4E-10		0.0187	[0.013-0.025] unit decrease	Affymetrix [10847151] (imputed)	N
1385	chr4	104933752	104933753	rs10034259	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling worry	372,869 European ancestry individuals	NA	4q24	NR	rs10034259-A	0.198988	3E-8		5.54	unit increase	NR [10847151] (imputed)	N
1386	chr4	104995989	104995990	rs74676541	31504550	Bradfield JP	2019-07-05	Hum Mol Genet	A Trans-ancestral Meta-Analysis of Genome-Wide Association Studies Reveals Loci Associated with Childhood Obesity.	Childhood obesity	8,613 European ancestry cases, 3,213 African American cases, 69 Moroccan ancestry cases, 986 Hispanic/Latino cases, 124 East Asian ancestry cases, 12,696 European ancestry controls, 1,392 African American controls, 64 Moroccan ancestry controls, 993 Hispanic/Latino controls, 454 East Asian ancestry controls	NA	4q24	NR	rs74676541-T	NR	8E-7	(African)	0.8802	[0.53-1.23] unit increase	Affymetrix, Illumina [up to 15123508] (imputed)	N
1386	chr4	105014949	105014950	rs28835572	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	4q24	NR	rs28835572-?	NR	5E-6		6098.2964	NR unit decrease	Illumina [2379855]	N
1386	chr4	105054012	105054013	rs17034334	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	4q24	NR	rs17034334-T	NR	2E-7	(GEE model)	0.54164	[0.34-0.75] unit increase	NR [NR] (imputed)	N
1386	chr4	105055251	105055252	rs13116718	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	4q24	NR	rs13116718-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
1386	chr4	105111455	105111456	rs1852679	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	4q24		rs1852679-?	NR	2E-12				NR [~ 8900000] (imputed)	N
1388	chr4	105267383	105267384	rs72677209	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	4q24	NR	rs72677209-?	NR	1E-8				Illumina [7760689] (imputed)	N
1388	chr4	105317995	105317998	rs10610420	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	4q24	TACR3, CXXC4	rs10610420-D	0.7138	1E-8		1.0402169		Affymetrix [11880941] (imputed)	N
1388	chr4	105326905	105326906	rs74597119	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		AC004052.1	rs74597119-?	NR	4E-8		0.38	[NR] unit increase	Affymetrix [NR] (imputed)	N
1388	chr4	105330132	105330133	rs11097861	30804566	Lane JM	2019-02-25	Nat Genet	Biological and clinical insights from genetics of insomnia symptoms.	Insomnia symptoms (never/rarely vs. usually)	129,270 European ancestry cases, 108,357 European ancestry controls	17,140 European ancestry cases, 61,850 European ancestry controls	4q24	TACR3/CXXC4	rs11097861-G	0.7154240000000001	4E-9		1.03	[1.01-1.04]	Affymetrix [14661600] (imputed)	N
1388	chr4	105330132	105330133	rs11097861	30804566	Lane JM	2019-02-25	Nat Genet	Biological and clinical insights from genetics of insomnia symptoms.	Insomnia symptoms (never/rarely vs. sometimes/usually)	345,022 European ancestry cases, 108,357 European ancestry controls	17,140 European ancestry cases, 61,850 European ancestry controls	4q24	TACR3/CXXC4	rs11097861-G	0.7154240000000001	5E-9		1.03	[1.01-1.04]	Affymetrix [14661600] (imputed)	N
1389	chr4	105399635	105399636	rs78743461	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		CXXC4	rs78743461-?	NR	4E-8		0.38	[NR] unit increase	Affymetrix [NR] (imputed)	N
1389	chr4	105450084	105450085	rs2905627	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	4q24	CXXC4	rs2905627-T	NR	9E-7	(EA)	1.0597	[1.04-1.08]	Illumina [6627481] (imputed)	N
1389	chr4	105450084	105450085	rs2905627	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	4q24	CXXC4	rs2905627-T	NR	8E-7		1.054	[1.03-1.07]	Illumina [6627481] (imputed)	N
1389	chr4	105450084	105450085	rs2905627	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	4q24	intergenic	rs2905627-T	NR	3E-6		1.05	[1.03-1.07]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1389	chr4	105450084	105450085	rs2905627	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	4q24	NR	rs2905627-T	NR	5E-7		1.06	[NR]	Illumina [7158791] (imputed)	N
1390	chr4	105554173	105554174	rs76290651	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		CXXC4-AS1	rs76290651-?	NR	1E-9	(female)	0.290254	[NR] unit increase	Affymetrix [NR] (imputed)	N
1390	chr4	105579100	105579101	rs61095879	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q24	AK094561	rs61095879-G	0.992	2E-6	(AA)	0.09	unit increase	Illumina [NR] (imputed)	N
1390	chr4	105605996	105605997	rs191279589	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q24	Intergenic	rs191279589-T	0.999	3E-6	(AA)	1.544	NR unit increase	Illumina [NR] (imputed)	N
1391	chr4	105648101	105648102	rs73839333	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q24	Intergenic	rs73839333-A	0.991	2E-6	(AA)	0.09	unit increase	Illumina [NR] (imputed)	N
1391	chr4	105651537	105651538	rs73839334	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q24	Intergenic	rs73839334-A	0.991	2E-6	(AA)	0.09	unit increase	Illumina [NR] (imputed)	N
1391	chr4	105691742	105691743	rs4698925	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	4q24	NR	rs4698925-?	NR	1E-7				Affymetrix [NR]	N
1391	chr4	105704195	105704196	rs17216465	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		AC004053.1	rs17216465-?	NR	3E-8	(female)	0.259835	[NR] unit increase	Affymetrix [NR] (imputed)	N
1391	chr4	105706326	105706327	rs2725759	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	4q24	KIAA1546	rs2725759-?	NR	9E-6	(taurocholate)	0.2591529	[0.14-0.37] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1391	chr4	105714756	105714757	rs151184257	32724131	Li QS	2020-07-28	Sci Rep	Genome-wide association study and polygenic risk score analysis of esketamine treatment response.	Response to esketamine in treatment resistant depression	255 European ancestry individuals	NA	4q24	CXXC4-AS1, TET2	rs151184257-?		5E-7		40.4986	[24.97-56.03] unit decrease	NR [NR] (imputed)	N
1391	chr4	105727391	105727392	rs181310918	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q24	Intergenic	rs181310918-C	0.99	3E-6	(AA)	0.082	unit increase	Illumina [NR] (imputed)	N
1391	chr4	105729019	105729020	rs77285130	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q24	Intergenic	rs77285130-T	0.994	6E-7	(AA)	0.108	unit increase	Illumina [NR] (imputed)	N
1391	chr4	105736258	105736259	rs78736651	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q24	Intergenic	rs78736651-A	0.988	3E-6	(AA)	0.079	unit increase	Illumina [NR] (imputed)	N
1391	chr4	105749532	105749533	rs73836173	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q24	Intergenic	rs73836173-A	0.993	6E-7	(AA)	0.102	unit increase	Illumina [NR] (imputed)	N
1391	chr4	105754539	105754540	rs73836179	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q24	Intergenic	rs73836179-G	0.988	3E-6	(AA)	0.074	unit increase	Illumina [NR] (imputed)	N
1391	chr4	105758058	105758059	rs62329718	33057200	Bao EL	2020-10-14	Nature	Inherited myeloproliferative neoplasm risk affects haematopoietic stem cells.	Myeloproliferative neoplasms	1,086 British ancestry cases, 407,155 British ancestry controls, 640 Finnish ancestry cases, 176,259 Finnish ancestry controls	NA	4q24	TET2	rs62329718-A	0.0374	7E-27		2.11	1.84-2.42	Affymetrix [6845584] (imputed)	N
1391	chr4	105758058	105758059	rs62329718	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	4q24	RP11-556I14.2	rs62329718-A	0.031153	1E-11		0.043866765	[0.031-0.057] unit decrease	Affymetrix [93095623] (imputed)	N
1391	chr4	105758058	105758059	rs62329718	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	4q24		rs62329718-?	NR	3E-15				NR [~ 8900000] (imputed)	N
1392	chr4	105778329	105778330	rs2522490	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	4q24	TET2	rs2522490-A	0.37	2E-11		1.056	NR	Affymetrix [9154080] (imputed)	N
1392	chr4	105783388	105783389	rs73838632	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q24	Intergenic	rs73838632-G	0.988	4E-6	(AA)	0.073	unit increase	Illumina [NR] (imputed)	N
1392	chr4	105794044	105794045	rs73838634	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q24	Intergenic	rs73838634-G	0.987	3E-6	(AA)	0.072	unit increase	Illumina [NR] (imputed)	N
1392	chr4	105795515	105795516	rs56404102	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q24	Intergenic	rs56404102-C	0.987	3E-6	(AA)	0.072	unit increase	Illumina [NR] (imputed)	N
1392	chr4	105797466	105797467	rs112040989	28644415	Guenard F	2017-06-23	Nutrients	Genome-Wide Association Study of Dietary Pattern Scores.	Western dietary pattern	141 individuals	NA	4q24	TET2, LOC101929468	rs112040989-?	NR	7E-6				Illumina [2668805]	N
1392	chr4	105806095	105806096	rs73838636	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q24	Intergenic	rs73838636-A	0.988	3E-6	(AA)	0.073	unit increase	Illumina [NR] (imputed)	N
1392	chr4	105806107	105806108	rs144317085	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	Intrinsic epigenetic age acceleration	34,461 European ancestry individuals	NA	4q24	NR	rs144317085-T	0.0388	6E-10		0.5136	[0.35-0.68] unit decrease	Affymetrix, Illumina [7567980] (imputed)	N
1392	chr4	105806107	105806108	rs144317085	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	4q24	RP11-556I14.2	rs144317085-T	0.033568	2E-18		0.055380613	[0.043-0.068] unit increase	Affymetrix [93095623] (imputed)	N
1392	chr4	105806107	105806108	rs144317085	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	4q24	RP11-556I14.2	rs144317085-T	0.033574	2E-9		0.038057137	[0.026-0.05] unit increase	Affymetrix [93095623] (imputed)	N
1392	chr4	105806107	105806108	rs144317085	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	4q24	RP11-556I14.2	rs144317085-T	0.033554	1E-19		0.056623686	[0.044-0.069] unit decrease	Affymetrix [93095623] (imputed)	N
1392	chr4	105806107	105806108	rs144317085	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	4q24	RP11-556I14.2	rs144317085-T	0.033586	6E-27		0.06756202	[0.055-0.08] unit decrease	Affymetrix [93095623] (imputed)	N
1392	chr4	105806107	105806108	rs144317085	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q24	NR	rs144317085-T	0.0331314	7E-21				Affymetrix, Illumina [24649327] (imputed)	N
1392	chr4	105806107	105806108	rs144317085	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	4q24	NR	rs144317085-T	0.034356	3E-22		0.049756	[0.04-0.06] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
1392	chr4	105806107	105806108	rs144317085	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q24	NR	rs144317085-T	0.032917	3E-30				Affymetrix, Illumina [23467995] (imputed)	N
1392	chr4	105806107	105806108	rs144317085	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	4q24	NR	rs144317085-T	0.034154	3E-32		0.061822	[0.052-0.072] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
1392	chr4	105806107	105806108	rs144317085	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q24	NR	rs144317085-T	0.033039	1E-16				Affymetrix, Illumina [24246363] (imputed)	N
1392	chr4	105806107	105806108	rs144317085	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	4q24	NR	rs144317085-T	0.034295	2E-19		0.045572	[0.036-0.055] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1392	chr4	105806107	105806108	rs144317085	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q24	NR	rs144317085-T	0.0328997	1E-13				Affymetrix, Illumina [20825802] (imputed)	N
1392	chr4	105806107	105806108	rs144317085	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	4q24		rs144317085-?	NR	8E-16				NR [~ 8900000] (imputed)	N
1392	chr4	105806107	105806108	rs144317085	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	4q24	intergenic	rs144317085-A	0.9657	3E-8		0.4513	[0.29-0.61] mmHg decrease	Affymetrix [NR] (imputed)	N
1392	chr4	105811699	105811700	rs73838638	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q24	Intergenic	rs73838638-G	0.994	1E-6	(AA)	0.104	unit increase	Illumina [NR] (imputed)	N
1392	chr4	105816897	105816898	rs9998015	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	4q24		rs9998015-?	NR	6E-23				NR [~ 8900000] (imputed)	N
1392	chr4	105822558	105822559	rs73838643	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q24	Intergenic	rs73838643-T	0.988	3E-6	(AA)	0.073	unit increase	Illumina [NR] (imputed)	N
1392	chr4	105825133	105825134	rs73838644	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q24	Intergenic	rs73838644-A	0.988	3E-6	(AA)	0.073	unit increase	Illumina [NR] (imputed)	N
1392	chr4	105825449	105825450	rs192264222	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q24	Intergenic	rs192264222-T	0.988	3E-6	(AA)	0.073	unit increase	Illumina [NR] (imputed)	N
1392	chr4	105834497	105834498	rs73838646	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q24	Intergenic	rs73838646-C	0.988	3E-6	(AA)	0.073	unit increase	Illumina [NR] (imputed)	N
1392	chr4	105842672	105842673	rs556853082	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-hip ratio	1,254 whole genome sequenced European ancestry individuals, 3,071 whole genome sequenced individuals, 29,723 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,053 Mylopotamos (founder/genetic isolate) individuals, 879 Pomak (founder/genetic isolate) individuals	206,053 European ancestry individuals	4q24	RP11-556I14.2, RP11-556I14.1	rs556853082-A	0.9982	8E-6		1.6288	[0.91-2.34] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1392	chr4	105843918	105843919	rs147515761	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q24	Intergenic	rs147515761-C	0.987	2E-6	(AA)	0.074	unit increase	Illumina [NR] (imputed)	N
1392	chr4	105844272	105844273	rs10005603	20694014	Thye T	2010-08-08	Nat Genet	Genome-wide association analyses identifies a susceptibility locus for tuberculosis on chromosome 18q11.2.	Tuberculosis	2,237 Sub-Saharan African ancestry cases, 3,122 Sub-Saharan African ancestry controls	1,462 Sub-Saharan African ancestry cases, 4,604 Sub-Saharan African ancestry controls	4q24	NR	rs10005603-?	0.65	7E-6		1.2	[1.11-1.25]	Affymetrix [> 333754] (imputed)	N
1392	chr4	105851875	105851876	rs61068760	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q24	Intergenic	rs61068760-G	0.987	9E-7	(AA)	0.079	unit increase	Illumina [NR] (imputed)	N
1392	chr4	105853121	105853122	rs76187983	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q24	Intergenic	rs76187983-G	0.987	9E-7	(AA)	0.079	unit increase	Illumina [NR] (imputed)	N
1392	chr4	105864529	105864531	rs199741557	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	4q24		rs199741557-A	NR	6E-12		0.0472	[0.034-0.061] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
1392	chr4	105864529	105864531	rs199741557	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	4q24		rs199741557-A	NR	4E-17		0.0562	[0.043-0.069] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
1392	chr4	105864529	105864531	rs199741557	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	4q24	RP11-556I14.1, RP11-556I14.2	rs199741557-A	0.031817	5E-18		0.055759795	[0.043-0.068] unit increase	Affymetrix [93095623] (imputed)	N
1392	chr4	105864529	105864531	rs199741557	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	4q24	RP11-556I14.1, RP11-556I14.2	rs199741557-A	0.03181	5E-17		0.054159205	[0.041-0.067] unit increase	Affymetrix [93095623] (imputed)	N
1392	chr4	105864529	105864531	rs199741557	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	4q24	RP11-556I14.1, RP11-556I14.2	rs199741557-A	0.031832	2E-22		0.06305433	[0.05-0.076] unit increase	Affymetrix [93095623] (imputed)	N
1392	chr4	105864529	105864531	rs199741557	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	4q24	RP11-556I14.1, RP11-556I14.2	rs199741557-A	0.031825	9E-18		0.0495599	[0.038-0.061] unit decrease	Affymetrix [93095623] (imputed)	N
1392	chr4	105864529	105864531	rs199741557	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	4q24	RP11-556I14.1, RP11-556I14.2	rs199741557-A	0.03182	6E-16		0.051948067	[0.039-0.065] unit decrease	Affymetrix [93095623] (imputed)	N
1392	chr4	105864529	105864531	rs199741557	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	4q24	RP11-556I14.1, RP11-556I14.2	rs199741557-A	0.0325	6E-9		0.06007545	[0.04-0.08] unit increase	Affymetrix [~ 2500000] (imputed)	N
1392	chr4	105864529	105864531	rs199741557	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	4q24	RP11-556I14.1, RP11-556I14.2	rs199741557-A	0.0325	2E-9		0.06158422	[0.041-0.082] unit increase	Affymetrix [~ 2500000] (imputed)	N
1392	chr4	105864529	105864531	rs199741557	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	4q24	RP11-556I14.1, RP11-556I14.2	rs199741557-A	0.0325	4E-11		0.0675629	[0.048-0.088] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1392	chr4	105867914	105867915	rs73838651	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q24	Intergenic	rs73838651-C	0.989	4E-7	(AA)	0.087	unit increase	Illumina [NR] (imputed)	N
1392	chr4	105871449	105871450	rs73838652	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q24	Intergenic	rs73838652-A	0.989	4E-7	(AA)	0.088	unit increase	Illumina [NR] (imputed)	N
1392	chr4	105871724	105871725	rs73838653	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q24	Intergenic	rs73838653-A	0.989	4E-7	(AA)	0.088	unit increase	Illumina [NR] (imputed)	N
1392	chr4	105873782	105873783	rs56235007	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q24	Intergenic	rs56235007-C	0.989	4E-7	(AA)	0.088	unit increase	Illumina [NR] (imputed)	N
1392	chr4	105873812	105873813	rs142756290	28272467	Heilmann-Heimbach S	2017-03-08	Nat Commun	Meta-analysis identifies novel risk loci and yields systematic insights into the biology of male-pattern baldness.	Male-pattern baldness	10,846 European ancestry cases, 11,672 European ancestry controls	NA	4q24		rs142756290-G	0.07	4E-8		0.22	[0.14-0.3] unit increase	Affymetrix, Illumina [8004650] (imputed)	N
1392	chr4	105874543	105874544	rs73838654	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q24	Intergenic	rs73838654-C	0.989	4E-7	(AA)	0.088	unit increase	Illumina [NR] (imputed)	N
1392	chr4	105874585	105874586	rs73838655	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q24	Intergenic	rs73838655-C	0.989	4E-7	(AA)	0.088	unit increase	Illumina [NR] (imputed)	N
1392	chr4	105877568	105877569	rs75136230	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q24	NR	rs75136230-A	0.01916	2E-8	(SBDS)	0.03916	NR unit increase	Illumina [1671387] (imputed)	N
1392	chr4	105879193	105879194	rs74341662	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q24	Intergenic	rs74341662-G	0.988	4E-7	(AA)	0.086	unit increase	Illumina [NR] (imputed)	N
1392	chr4	105880749	105880750	rs77556290	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q24	Intergenic	rs77556290-A	0.986	4E-6	(AA)	0.074	unit increase	Illumina [NR] (imputed)	N
1392	chr4	105887307	105887308	rs73838658	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q24	Intergenic	rs73838658-T	0.988	4E-7	(AA)	0.086	unit increase	Illumina [NR] (imputed)	N
1393	chr4	105908316	105908317	rs10516514	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	4q24	NR	rs10516514-?	NR	4E-6				Affymetrix [NR]	N
1393	chr4	105935666	105935667	rs4699146	32399468	Melhuish Beaupre LM	2020-01-08	Mol Neuropsychiatry	Genome-Wide Association Study of Sleep Disturbances in Depressive Disorders.	Sleep disturbance (increased sleep) in depressive disorders	128 European ancestry cases, 223 European ancestry controls	NA	4q24		rs4699146-?	NR	6E-7		0.4026		Illumina [5932083] (imputed)	N
1393	chr4	105939407	105939408	rs10033455	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	4q24		rs10033455-C	NR	3E-13		0.0166	[0.012-0.021] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
1393	chr4	105939407	105939408	rs10033455	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	4q24	RP11-556I14.1	rs10033455-C	0.662474	1E-12		0.01708979	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1393	chr4	105939407	105939408	rs10033455	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	4q24	RP11-556I14.1	rs10033455-C	0.662465	3E-12		0.0136001	[0.0093-0.0179] unit increase	Affymetrix [93095623] (imputed)	N
1393	chr4	105939645	105939646	rs4699147	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	4q24	RP11-556I14.1	rs4699147-C	0.546254	2E-10		0.014430723	[0.01-0.0189] unit increase	Affymetrix [93095623] (imputed)	N
1393	chr4	105939645	105939646	rs4699147	32399468	Melhuish Beaupre LM	2020-01-08	Mol Neuropsychiatry	Genome-Wide Association Study of Sleep Disturbances in Depressive Disorders.	Sleep disturbance (increased sleep) in depressive disorders	128 European ancestry cases, 223 European ancestry controls	NA	4q24		rs4699147-?	NR	2E-6		0.4351		Illumina [5932083] (imputed)	N
1393	chr4	105949267	105949268	rs6818511	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	4q24		rs6818511-C	NR	9E-10		0.0139	[0.0094-0.0184] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
1393	chr4	105949267	105949268	rs6818511	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	4q24	RP11-556I14.1	rs6818511-C	0.660833	6E-15		0.018425696	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1393	chr4	105951188	105951189	rs113549824	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	4q24		rs113549824-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1393	chr4	105960854	105960855	rs7676227	32399468	Melhuish Beaupre LM	2020-01-08	Mol Neuropsychiatry	Genome-Wide Association Study of Sleep Disturbances in Depressive Disorders.	Sleep disturbance (increased sleep) in depressive disorders	128 European ancestry cases, 223 European ancestry controls	NA	4q24		rs7676227-?	NR	6E-7		0.4063		Illumina [5932083] (imputed)	N
1393	chr4	105963308	105963309	rs57440313	32399468	Melhuish Beaupre LM	2020-01-08	Mol Neuropsychiatry	Genome-Wide Association Study of Sleep Disturbances in Depressive Disorders.	Sleep disturbance (increased sleep) in depressive disorders	128 European ancestry cases, 223 European ancestry controls	NA	4q24		rs57440313-?	NR	2E-6		0.4257		Illumina [5932083] (imputed)	N
1393	chr4	105967859	105967860	rs12499100	32399468	Melhuish Beaupre LM	2020-01-08	Mol Neuropsychiatry	Genome-Wide Association Study of Sleep Disturbances in Depressive Disorders.	Sleep disturbance (increased sleep) in depressive disorders	128 European ancestry cases, 223 European ancestry controls	NA	4q24		rs12499100-?	NR	5E-7		0.4035		Illumina [5932083] (imputed)	N
1393	chr4	105968942	105968943	rs7676563	32399468	Melhuish Beaupre LM	2020-01-08	Mol Neuropsychiatry	Genome-Wide Association Study of Sleep Disturbances in Depressive Disorders.	Sleep disturbance (increased sleep) in depressive disorders	128 European ancestry cases, 223 European ancestry controls	NA	4q24		rs7676563-?	NR	5E-7		0.4035		Illumina [5932083] (imputed)	N
1393	chr4	105969700	105969701	rs7699743	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	4q24	RP11-556I14.1	rs7699743-T	0.639892	4E-13		0.01685899	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1393	chr4	105969700	105969701	rs7699743	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	4q24	RP11-556I14.1	rs7699743-C	0.36008	2E-13		0.017263575	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1393	chr4	105969700	105969701	rs7699743	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	4q24	NR	rs7699743-T	0.643303	6E-11		0.012654	[0.0089-0.0164] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1393	chr4	105971427	105971428	rs2866763	32399468	Melhuish Beaupre LM	2020-01-08	Mol Neuropsychiatry	Genome-Wide Association Study of Sleep Disturbances in Depressive Disorders.	Sleep disturbance (increased sleep) in depressive disorders	128 European ancestry cases, 223 European ancestry controls	NA	4q24		rs2866763-?	NR	5E-7		0.4035		Illumina [5932083] (imputed)	N
1393	chr4	105972382	105972382	rs397785714	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	4q24		rs397785714-GA	NR	9E-9		0.0123	[0.0082-0.0164] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
1393	chr4	105972509	105972510	rs6533173	32399468	Melhuish Beaupre LM	2020-01-08	Mol Neuropsychiatry	Genome-Wide Association Study of Sleep Disturbances in Depressive Disorders.	Sleep disturbance (increased sleep) in depressive disorders	128 European ancestry cases, 223 European ancestry controls	NA	4q24		rs6533173-?	NR	5E-7		0.4035		Illumina [5932083] (imputed)	N
1393	chr4	105976548	105976549	rs4563501	32399468	Melhuish Beaupre LM	2020-01-08	Mol Neuropsychiatry	Genome-Wide Association Study of Sleep Disturbances in Depressive Disorders.	Sleep disturbance (increased sleep) in depressive disorders	128 European ancestry cases, 223 European ancestry controls	NA	4q24		rs4563501-?	NR	5E-7		0.4035		Illumina [5932083] (imputed)	N
1393	chr4	105976754	105976755	rs6847240	32399468	Melhuish Beaupre LM	2020-01-08	Mol Neuropsychiatry	Genome-Wide Association Study of Sleep Disturbances in Depressive Disorders.	Sleep disturbance (increased sleep) in depressive disorders	128 European ancestry cases, 223 European ancestry controls	NA	4q24		rs6847240-?	NR	5E-7		0.4035		Illumina [5932083] (imputed)	N
1393	chr4	105978110	105978111	rs1844655	32399468	Melhuish Beaupre LM	2020-01-08	Mol Neuropsychiatry	Genome-Wide Association Study of Sleep Disturbances in Depressive Disorders.	Sleep disturbance (increased sleep) in depressive disorders	128 European ancestry cases, 223 European ancestry controls	NA	4q24		rs1844655-?	NR	5E-7		0.4035		Illumina [5932083] (imputed)	N
1393	chr4	105980387	105980388	rs4699151	32399468	Melhuish Beaupre LM	2020-01-08	Mol Neuropsychiatry	Genome-Wide Association Study of Sleep Disturbances in Depressive Disorders.	Sleep disturbance (increased sleep) in depressive disorders	128 European ancestry cases, 223 European ancestry controls	NA	4q24		rs4699151-?	NR	5E-7		0.4035		Illumina [5932083] (imputed)	N
1393	chr4	105982076	105982076	rs35822090	32399468	Melhuish Beaupre LM	2020-01-08	Mol Neuropsychiatry	Genome-Wide Association Study of Sleep Disturbances in Depressive Disorders.	Sleep disturbance (increased sleep) in depressive disorders	128 European ancestry cases, 223 European ancestry controls	NA	4q24		rs35822090-?	NR	5E-7		0.4035		Illumina [5932083] (imputed)	N
1393	chr4	105986596	105986597	rs195149	32399468	Melhuish Beaupre LM	2020-01-08	Mol Neuropsychiatry	Genome-Wide Association Study of Sleep Disturbances in Depressive Disorders.	Sleep disturbance (increased sleep) in depressive disorders	128 European ancestry cases, 223 European ancestry controls	NA	4q24		rs195149-?	NR	5E-7		0.4035		Illumina [5932083] (imputed)	N
1393	chr4	105987914	105987915	rs168989	32399468	Melhuish Beaupre LM	2020-01-08	Mol Neuropsychiatry	Genome-Wide Association Study of Sleep Disturbances in Depressive Disorders.	Sleep disturbance (increased sleep) in depressive disorders	128 European ancestry cases, 223 European ancestry controls	NA	4q24		rs168989-?	NR	5E-7		0.4035		Illumina [5932083] (imputed)	N
1393	chr4	105989284	105989285	rs188427350	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	4q24		rs188427350-?	NR	5E-24				NR [~ 8900000] (imputed)	N
1393	chr4	106009762	106009763	rs2301718	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	4q24	NR	rs2301718-A	0.2332	3E-10	(total)	587.0467	[404.38-769.71] unit increase	Affymetrix, Illumina [NR]	N
1393	chr4	106010432	106010433	rs12509636	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		4q24	NR	rs12509636-T	NR	1E-8		0.0384429	NR unit decrease	NR [NR] (imputed)	N
1393	chr4	106019836	106019837	rs12643081	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	4q24		rs12643081-T	0.313	6E-10				Affymetrix [10369434] (imputed)	N
1393	chr4	106034083	106034084	rs4699154	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q24	NR	rs4699154-C	0.733519	1E-32				Affymetrix, Illumina [24588908] (imputed)	N
1393	chr4	106034083	106034084	rs4699154	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q24	NR	rs4699154-T	0.315421	1E-35				Affymetrix, Illumina [17210439] (imputed)	N
1393	chr4	106034083	106034084	rs4699154	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	4q24	RP11-556I14.1	rs4699154-C	0.6901	1E-11		0.02689778	[0.019-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
1393	chr4	106034083	106034084	rs4699154	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	4q24	RP11-556I14.1	rs4699154-C	0.6902	3E-12		0.02736662	[0.02-0.035] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1393	chr4	106034929	106034930	rs62331124	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	4q24		rs62331124-C	NR	2E-20		0.0217	[0.017-0.026] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
1393	chr4	106034929	106034930	rs62331124	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	4q24		rs62331124-?	NR	1E-16				NR [~ 8900000] (imputed)	N
1393	chr4	106034929	106034930	rs62331124	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	4q24	NR	rs62331124-C	0.310765	6E-21		0.0315332	[0.025-0.038] unit decrease	NR [19129689] (imputed)	N
1393	chr4	106034929	106034930	rs62331124	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	4q24		rs62331124-?	NR	3E-17		0.0187747	[0.014-0.023] unit decrease	Affymetrix [20259828] (imputed)	N
1393	chr4	106035434	106035435	rs4699156	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	4q24		rs4699156-C	NR	3E-22		0.0227	[0.018-0.027] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1393	chr4	106035434	106035435	rs4699156	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	4q24	RP11-556I14.1	rs4699156-C	0.690024	1E-18		0.022028323	[0.017-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1393	chr4	106035434	106035435	rs4699156	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	4q24	RP11-556I14.1	rs4699156-C	0.690025	2E-24		0.024926487	[0.02-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
1393	chr4	106035434	106035435	rs4699156	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	4q24	NR	rs4699156-C	0.689805	1E-34		0.024322	[0.02-0.028] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1393	chr4	106035434	106035435	rs4699156	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	4q24	NR	rs4699156-A	0.310245	4E-35		0.025768	[0.022-0.03] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1393	chr4	106036544	106036545	rs17035270	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	4q24	intergenic	rs17035270-T	0.797	4E-7		0.036	[0.022-0.05] unit decrease	NR [8041861] (imputed)	N
1394	chr4	106038168	106038169	rs17429745	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	4q24	TET2	rs17429745-G	0.688824	3E-23		0.00238422	[0.0019-0.0029] unit increase	Affymetrix [13995440] (imputed)	N
1394	chr4	106038168	106038169	rs17429745	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	4q24	CXXC4, TET2	rs17429745-G	0.69	4E-17		8.41	z-score increase	Affymetrix [4311822] (imputed)	N
1394	chr4	106038168	106038169	rs17429745	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	4q24	TET2	rs17429745-G	0.692567	2E-10		0.0131995	[0.0091-0.0173] unit decrease	NR [13737936] (imputed)	N
1394	chr4	106042691	106042692	rs1859161	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	4q24		rs1859161-?	NR	4E-10				NR [~ 8900000] (imputed)	N
1394	chr4	106045495	106045496	rs66758084	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	4q24		rs66758084-?	NR	9E-19				NR [~ 8900000] (imputed)	N
1394	chr4	106045495	106045496	rs66758084	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	4q24		rs66758084-?	NR	7E-18		0.0223789	[0.017-0.028] unit increase	Affymetrix [20259828] (imputed)	N
1394	chr4	106048290	106048291	rs17035289	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	4q24	NR	rs17035289-C	0.1708	6E-12		0.0428	[0.031-0.055] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1394	chr4	106048290	106048291	rs17035289	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	4q24	NR	rs17035289-C	0.2062	2E-13		0.0357	[0.026-0.045] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1394	chr4	106048290	106048291	rs17035289	31089142	Law PJ	2019-05-14	Nat Commun	Association analyses identify 31 new risk loci for colorectal cancer susceptibility.	Colorectal cancer	31,197 European ancestry cases, 61,770 European ancestry controls	NA	4q24	NR	rs17035289-T	0.83	3E-10		1.1	[1.07-1.13]	Affymetrix, Illumina [> 10000000] (imputed)	N
1394	chr4	106048359	106048360	rs1541374	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	4q24	ENSG00000248373	rs1541374-T	NR	9E-10		0.022779945	[0.015-0.03] unit decrease	Affymetrix [NR]	N
1394	chr4	106048359	106048360	rs1541374	21946350	Soler Artigas M	2011-09-25	Nat Genet	Genome-wide association and large-scale follow up identifies 16 new loci influencing lung function.	Pulmonary function	48,201 European ancestry individuals	46,411 European ancestry individuals	4q24	TET2	rs1541374-T	NR	6E-7	(FEV1)	0.026	[0.016-0.036] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1394	chr4	106048562	106048563	rs11097881	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	4q24	RP11-556I14.1	rs11097881-A	NR	3E-8		0.0244113	[0.016-0.033] unit decrease	Affymetrix [321114] (imputed)	N
1394	chr4	106048562	106048563	rs11097881	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	4q24		rs11097881-?	NR	7E-10				NR [~ 8900000] (imputed)	N
1394	chr4	106049146	106049147	rs4698932	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	4q24	ENSG00000248373	rs4698932-A	NR	3E-11		0.019322889	[0.014-0.025] unit increase	Affymetrix [NR]	N
1394	chr4	106055211	106055212	rs4699157	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	4q24	NR	rs4699157-C	0.042	4E-8		1.0845987	[1.06-1.11]	Affymetrix, Illumina [NR] (imputed)	N
1394	chr4	106058185	106058185	rs57251748	27432226	Kar SP	2016-07-17	Cancer Discov	Genome-Wide Meta-Analyses of Breast, Ovarian, and Prostate Cancer Association Studies Identify Multiple New Susceptibility Loci Shared by at Least Two Cancer Types.	Breast cancer, ovarian cancer or prostate cancer (pleiotropy)	62,533 European ancestry breast cancer female cases, 60,976 European ancestry controls, 15,437 European ancestry invasive epithelial ovarian cancer female cases, 30,845 European ancestry controls, 34,379 European ancestry prostate cancer male cases, 33,164 European ancestry controls	NA	4q24	TET2	rs57251748-CT	0.15	9E-12		0.0598	[0.043-0.077] unit decrease	Illumina [NR]	N
1394	chr4	106061533	106061534	rs7679673	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Prostate cancer	11,599 European ancestry cases, 199,628 European ancestry controls, 5,672 East Asian ancestry cases, 84,660 East Asian ancestry controls	NA	4q24		rs7679673-A	NR	2E-15		0.1018	[0.077-0.127] unit decrease	Affymetrix, Illumina [25775424] (imputed)	N
1394	chr4	106061533	106061534	rs7679673	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Prostate cancer	7,438 White British ancestry cases, 118,206 White British ancestry controls	NA	4q24		rs7679673-?	NR	1E-13		0.874508	[0.84-0.91]	NR [680312]	N
1394	chr4	106061533	106061534	rs7679673	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 91,972 European ancestry controls	6,852 European ancestry cases, 193,117 European ancestry controls	4q24	NR	rs7679673-C	0.625027821	1E-6		1.1038603	[1.06-1.15]	Affymetrix, Illumina [20400945] (imputed)	N
1394	chr4	106061533	106061534	rs7679673	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	4q24	NR	rs7679673-C	NR	3E-35		1.1	[1.08-1.12]	Affymetrix, Illumina [29235255] (imputed)	N
1394	chr4	106061533	106061534	rs7679673	33293427	Emami NC	2020-12-08	Cancer Res	A large-scale association study detects novel rare variants, risk genes, functional elements, and polygenic architecture of prostate cancer susceptibility.	Prostate cancer	14,113 European ancestry cases, 194,140 European ancestry controls	NA	4q24	NR	rs7679673-C	NR	4E-18		1.14	NR	Affymetrix [at least 232408] (imputed)	N
1394	chr4	106061533	106061534	rs7679673	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	4q24	NR	rs7679673-A	0.39	8E-9		0.91	[0.88-0.94]	Affymetrix [9886854] (imputed)	N
1394	chr4	106061533	106061534	rs7679673	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	4q24	NR	rs7679673-A	0.39	2E-13			[NR]	Affymetrix [9886854] (imputed)	N
1394	chr4	106061533	106061534	rs7679673	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in never smokers	8,631 European ancestry cases, 120,544 European ancestry controls	NA	4q24	NR	rs7679673-A	0.39	4E-9		0.9	[0.87-0.94]	Affymetrix [9886854] (imputed)	N
1394	chr4	106061533	106061534	rs7679673	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in ever smokers	12,446 European ancestry cases, 59,145 European ancestry controls	NA	4q24	NR	rs7679673-A	0.39	6E-7		0.93	[0.9-0.95]	Affymetrix [9886854] (imputed)	N
1394	chr4	106061533	106061534	rs7679673	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	4q24	AC004069.2	rs7679673-A	0.375627	9E-21		0.021776177	[0.017-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1394	chr4	106061533	106061534	rs7679673	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q24	NR	rs7679673-A	0.442172	1E-32				Affymetrix, Illumina [23114412] (imputed)	N
1394	chr4	106061533	106061534	rs7679673	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	4q24	NR	rs7679673-A	0.379766	2E-33		0.023824	[0.02-0.028] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
1394	chr4	106061533	106061534	rs7679673	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	4q24		rs7679673-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1394	chr4	106061533	106061534	rs7679673	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	4q24		rs7679673-?	NR	6E-9				NR [~ 8900000] (imputed)	N
1394	chr4	106061533	106061534	rs7679673	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	4q24	NR	rs7679673-C	0.59	1E-49		1.13	[1.11-1.15]	Illumina [20370935] (imputed)	N
1394	chr4	106061533	106061534	rs7679673	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	4q24	AC004069.2	rs7679673-A	0.3745	2E-10		0.02349569	[0.016-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1394	chr4	106061533	106061534	rs7679673	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	4q24	AC004069.2	rs7679673-A	0.3745	2E-10		0.02358711	[0.016-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1394	chr4	106061533	106061534	rs7679673	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	4q24	AC004069.2	rs7679673-A	0.3746	2E-10		0.02345559	[0.016-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1394	chr4	106061533	106061534	rs7679673	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	4q24	AC004069.2	rs7679673-A	0.3747	3E-10		0.0233218	[0.016-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1394	chr4	106061533	106061534	rs7679673	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	4q24	AC004069.2	rs7679673-A	0.3746	1E-10		0.02369403	[0.016-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1394	chr4	106061533	106061534	rs7679673	27197191	Fehringer G	2016-04-20	Cancer Res	Cross-Cancer Genome-Wide Analysis of Lung, Ovary, Breast, Prostate, and Colorectal Cancer Reveals Novel Pleiotropic Associations.	Cancer (pleiotropy)	5,020 European ancestry lung cancer cases, 3,718 European ancestry lung adenocarcinoma cases, 3,422 European ancestry lung squamous cell carcinoma cases, 15,414 European ancestry colorectal cancer cases, 10,809 European ancestry breast cancer cases, 4,939 European ancestry estrogen receptor negative breast cancer cases, 1,098 European ancestry ovarian cancer cases, 2,556 European ancestry serous ovarian cancer cases, 715 European ancestry ovarian endometrioid carcinoma cases, 9,710 European ancestry prostate cancer cases, 4,450 European ancestry aggressive prostate cancer cases,  61,820 European ancestry controls	NA	4q24	Intergenic	rs7679673-A	NR	1E-10	(subset analysis)			Affymetrix, Illumina [9916564] (imputed)	N
1394	chr4	106061533	106061534	rs7679673	26034056	Hoffmann TJ	2015-06-01	Cancer Discov	A large multiethnic genome-wide association study of prostate cancer identifies novel risk variants and substantial ethnic differences.	Prostate cancer	6,406 European ancestry cases, 601 African American cases, 288 East Asian ancestry cases, 488 Latino cases30,866 European ancestry controls, 1,650 African American controls, 2,938 East Asian ancestry controls, 3,141 Latino controls	4,599 European ancestry cases, 2,265 African American cases, 2,940 European ancestry controls, 2,414 African American controls	4q24	NR	rs7679673-C	0.59	5E-8		1.12	[1.07-1.16]	Affymetrix [up to 19977088] (imputed)	N
1394	chr4	106061533	106061534	rs7679673	25939597	Berndt SI	2015-05-05	Nat Commun	Two susceptibility loci identified for prostate cancer aggressiveness.	Prostate cancer	4,600 European ancestry cases, 2,941 European ancestry controls	7,779 European ancestry cases, 7,623 European ancestry controls	4q24	TET2	rs7679673-C	0.58	4E-9		1.12	[1.08-1.16]	Illumina [1531807] (imputed)	N
1394	chr4	106061533	106061534	rs7679673	19767753	Eeles RA	2009-09-20	Nat Genet	Identification of seven new prostate cancer susceptibility loci through a genome-wide association study.	Prostate cancer	1,854 European ancestry cases, 1,894 European ancestry controls	19,879 cases and 18,761 controls of European, East Asian, African American, Latino, and Hawaiian ancestry	4q24	TET2	rs7679673-?	0.55	3E-14		1.1	[1.06-1.14]	Illumina [541129]	N
1394	chr4	106063986	106063987	rs12647922	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	4q24	AC004069.2	rs12647922-T	NR	3E-14		0.0266941	[0.02-0.034] unit increase	Affymetrix [319769] (imputed)	N
1394	chr4	106063986	106063987	rs12647922	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	4q24	AC004069.2	rs12647922-T	NR	1E-10		0.0227493	[0.016-0.03] unit increase	Affymetrix [321114] (imputed)	N
1394	chr4	106064626	106064626	rs34480284	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FEV1/FVC)	48,943 European ancestry individuals	57,176 European ancestry individuals, 38,199 individuals.	4q24	TET2	rs34480284-A	0.3737	1E-8		0.039	[0.025-0.053] unit increase	Affymetrix [27624732] (imputed)	N
1394	chr4	106064626	106064626	rs34480284	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FEV1)	48,943 European ancestry individuals.	57,176 European ancestry individuals, 38,199 individuals.	4q24	TET2	rs34480284-A	0.38	9E-9		0.039	[0.025-0.053] unit increase	Affymetrix [up to 27624732] (imputed)	N
1394	chr4	106064682	106064683	rs17617028	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	4q24	TET2	rs17617028-A	NR	4E-13		0.0254501	[0.019-0.032] unit increase	Affymetrix [319769] (imputed)	N
1394	chr4	106064753	106064754	rs17035310	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	4q24	NR	rs17035310-C	NR	3E-9		1.069	[1.05-1.09]	Affymetrix, Illumina [29235255] (imputed)	N
1394	chr4	106064753	106064754	rs17035310	26621817	Cheng TH	2015-12-01	Sci Rep	Meta-analysis of genome-wide association studies identifies common susceptibility polymorphisms for colorectal and endometrial cancer near SH2B3 and TSHZ1.	Colorectal or endometrial cancer	5,725 European ancestry colorectal carcinoma cases, 2,212 European ancestry endometrial carcinoma cases, 13,396 European ancestry controls	4,330 European ancestry endometrial carcinoma cases, 26,849 European ancestry controls	4q24	TET2	rs17035310-C	0.876	6E-7	(same direction)	1.13	[1.08-1.18]	Illumina [up to 6000000] (imputed)	N
1394	chr4	106065307	106065308	rs10007915	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	4q24	TET2	rs10007915-G	NR	7E-10		0.0186481	[0.013-0.025] unit decrease	Affymetrix [321788] (imputed)	N
1394	chr4	106065307	106065308	rs10007915	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Prostate cancer	10,792 European ancestry cases, 410,350 European ancestry controls	NA	4q24		rs10007915-C	NR	2E-17		1.1371	NR	Affymetrix [7846216] (imputed)	N
1394	chr4	106065307	106065308	rs10007915	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)(bidirectional)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	4q24		rs10007915-C	NR	2E-17				Affymetrix [7846216] (imputed)	N
1394	chr4	106066981	106066982	rs7661349	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	4q24	TET2	rs7661349-C	0.632618	1E-18		0.02388287	[0.019-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1394	chr4	106069012	106069013	rs62331150	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	4q24	NR	rs62331150-T	0.2263	2E-11	(EA)	0.0494	[0.035-0.064] unit increase	Illumina [~ 11800000] (imputed)	N
1394	chr4	106071063	106071064	rs974801	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	4q24	TET2	rs974801-G	NR	3E-14		0.0222621	[0.017-0.028] unit increase	Affymetrix [319769] (imputed)	N
1394	chr4	106071063	106071064	rs974801	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	4q24	TET2	rs974801-G	NR	9E-16		0.023546	[0.018-0.029] unit increase	Affymetrix [319769] (imputed)	N
1394	chr4	106071063	106071064	rs974801	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	4q24	NR	rs974801-A	0.6417	1E-7		0.0093	[0.006-0.0126] unit decrease	NR [~ 27400000] (imputed)	N
1394	chr4	106074825	106074826	rs6533181	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	4q24		rs6533181-G	NR	4E-73		0.0259	[0.023-0.029] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1394	chr4	106074825	106074826	rs6533181	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	4q24		rs6533181-G	0.818031	1E-23		0.0261747	[0.021-0.031] unit increase	Illumina [13479295] (imputed)	N
1394	chr4	106074825	106074826	rs6533181	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	4q24	TET2	rs6533181-?	NR	2E-30		0.042469867	[0.035-0.05] unit increase	Illumina [27896057] (imputed)	N
1394	chr4	106075497	106075498	rs2189234	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	4q24	TET2	rs2189234-G	0.6175	6E-21		0.025329763	[0.02-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
1394	chr4	106075497	106075498	rs2189234	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	4q24	TET2	rs2189234-G	0.6157619999999999	3E-16		0.025509	[0.019-0.032] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
1394	chr4	106075497	106075498	rs2189234	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	4q24	intergenic	rs2189234-A	0.3692	2E-10	(EA)	1.0847058	[1.06-1.11]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1394	chr4	106075497	106075498	rs2189234	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	4q24	NR	rs2189234-A	0.3692	4E-7	(EA)	1.0531957	[1.03-1.07]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1394	chr4	106076748	106076749	rs12643257	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	4q24		rs12643257-G	NR	3E-14		0.0173	[0.013-0.022] unit increase	Affymetrix, Illumina [20528270] (imputed)	N
1394	chr4	106076748	106076749	rs12643257	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	4q24	TET2	rs12643257-G	NR	5E-18		0.0255161	[0.02-0.031] unit increase	Affymetrix [321114] (imputed)	N
1394	chr4	106076748	106076749	rs12643257	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	4q24	TET2	rs12643257-G	NR	6E-9		0.0172126	[0.011-0.023] unit increase	Affymetrix [321169] (imputed)	N
1394	chr4	106078096	106078097	rs11728350	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	4q24		rs11728350-G	NR	5E-16		0.0279	[0.021-0.035] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
1394	chr4	106078096	106078097	rs11728350	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	4q24		rs11728350-G	NR	3E-11		0.0244	[0.017-0.032] unit increase	Affymetrix, Illumina [20535873] (imputed)	N
1394	chr4	106081635	106081636	rs9884482	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting insulin	151,013 European ancestry individuals	NA	4q24	TET2	rs9884482-T	0.6099	3E-11		0.0125	[0.0088-0.0162] unit decrease	Affymetrix, Illumina [32635793] (imputed)	N
1394	chr4	106081635	106081636	rs9884482	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting insulin	50,404 European ancestry women	NA	4q24	TET2	rs9884482-T	0.605914	7E-7		0.017715	[0.011-0.025] unit decrease	Affymetrix, Illumina [8700000] (imputed)	N
1394	chr4	106081635	106081636	rs9884482	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting insulin	105,056 European ancestry individuals	NA	4q24	TET2	rs9884482-T	0.606	2E-9		0.0149	[0.010-0.020] unit decrease	Affymetrix, Illumina [8700000] (imputed)	N
1394	chr4	106081635	106081636	rs9884482	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	4q24	TET2	rs9884482-T	0.628049	2E-10		0.0125876	[0.0087-0.0165] unit increase	Affymetrix [NR] (imputed)	N
1394	chr4	106081635	106081636	rs9884482	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	4q24	TET2	rs9884482-T	0.62801	8E-15		0.0157589	[0.012-0.02] unit increase	Affymetrix [NR] (imputed)	N
1394	chr4	106082119	106082120	rs13123752	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Coffee consumption	335,909 European ancestry individuals	39,924 European ancestry individuals	4q24	TET2	rs13123752-A	0.6161	2E-7		0.0079	[0.005-0.0108] unit increase	Affymetrix [~ 7740000] (imputed)	N
1394	chr4	106082119	106082120	rs13123752	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	4q24	NR	rs13123752-?	NR	2E-6		0.0082518	[0.0048-0.0117] unit increase	Affymetrix [805426] (imputed)	N
1394	chr4	106084777	106084778	rs9790517	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	4q24		rs9790517-T	NR	2E-9		1.04	[1.03-1.05]	Affymetrix, Illumina [NR] (imputed)	N
1394	chr4	106084777	106084778	rs9790517	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	4q24	TET2	rs9790517-T	0.23	5E-11	(EA)	1.04	[1.01-1.06] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
1394	chr4	106084777	106084778	rs9790517	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	46,785 European ancestry cases, 42,892 European ancestry controls	NA	4q24	NR	rs9790517-T	0.22	7E-6		1.05	[1.03-1.08]	Affymetrix, Illumina [~ 14000000] (imputed)	N
1394	chr4	106084777	106084778	rs9790517	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	15,748 European ancestry cases, 18,084 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls	4q24	NR	rs9790517-T	0.22	1E-9		1.05	[1.03-1.08]	Affymetrix, Illumina [~ 11600000] (imputed)	N
1394	chr4	106084777	106084778	rs9790517	23535729	Michailidou K	2013-04-01	Nat Genet	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	4q24	TET2	rs9790517-T	0.23	4E-8		1.05	[1.03-1.08]	Affymetrix, Illumina [~ 2600000] (imputed)	N
1394	chr4	106087821	106087822	rs10022109	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Lymphocyte counts	62,076 Japanese ancestry individuals	NA	4q24	TET2	rs10022109-?	NR	4E-8		0.03203	[0.021-0.043] unit increase novel	Illumina [6108953] (imputed)	N
1394	chr4	106091977	106091978	rs17035323	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	4q24	TET2	rs17035323-G	0.835461	1E-9		0.015853	[0.011-0.021] unit increase	NR [13737936] (imputed)	N
1394	chr4	106094426	106094427	rs2903385	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	4q24		rs2903385-A	NR	2E-20		0.0153	[0.012-0.018] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1394	chr4	106094426	106094427	rs2903385	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	4q24	NR	rs2903385-A	0.48453900000000005	2E-14		0.00939408	[0.0069-0.0119] unit increase	Affymetrix [16578495] (imputed)	N
1394	chr4	106094426	106094427	rs2903385	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	4q24	NR	rs2903385-A	0.485657	2E-18		0.024558	[0.019-0.03] unit increase	Affymetrix [16580851] (imputed)	N
1394	chr4	106094426	106094427	rs2903385	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	4q24	NR	rs2903385-A	0.4844	5E-13		1.044	[1.03-1.06]	Affymetrix, Illumina [NR] (imputed)	N
1394	chr4	106094426	106094427	rs2903385	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	4q24	NA	rs2903385-A	0.4839	5E-8	(Female)	1.041	[1.03-1.05]	Affymetrix, Illumina [NR] (imputed)	N
1394	chr4	106094426	106094427	rs2903385	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	4q24		rs2903385-?	NR	8E-80				NR [~ 8900000] (imputed)	N
1394	chr4	106094426	106094427	rs2903385	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	4q24	TET2-AS1	rs2903385-A	NR	4E-9		5.905	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1394	chr4	106099808	106099809	rs2903386	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	4q24	NR	rs2903386-?	NR	1E-18				Affymetrix [~ 8270000] (imputed)	N
1394	chr4	106099808	106099809	rs2903386	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	4q24	TET2	rs2903386-T	0.606	6E-6		0.0012	[0.00061-0.00179] unit decrease	Affymetrix [NR] (imputed)	N
1394	chr4	106102405	106102406	rs17583558	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	4q24		rs17583558-C	NR	2E-10		0.0115	[0.008-0.015] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
1394	chr4	106102990	106102991	rs191097752	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q24	TET2	rs191097752-C	0.999	5E-6	(AA)	1.539	NR unit increase	Illumina [NR] (imputed)	N
1394	chr4	106106352	106106353	rs10010325	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	4q24	NR	rs10010325-A	NR	4E-13		7.268	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1394	chr4	106106352	106106353	rs10010325	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	4q24	TET2	rs10010325-A	NR	3E-8		0.016128514	[0.01-0.022] unit increase	Affymetrix [NR]	N
1394	chr4	106106352	106106353	rs10010325	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	4q24	NR	rs10010325-?	NR	2E-11	(EA)			Affymetrix, Illumina [~ 9000000] (imputed)	N
1394	chr4	106106352	106106353	rs10010325	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	4q24	TET2	rs10010325-A	0.49	4E-11		0.024	[NR] unit increase	Affymetrix, Illumina [2834208] (imputed)	N
1394	chr4	106109380	106109381	rs4699165	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	4q24	TET2	rs4699165-A	NR	2E-11		0.0214375	[0.015-0.028] unit decrease	Affymetrix [323123] (imputed)	N
1394	chr4	106109380	106109381	rs4699165	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	NA	4q24	RN7SL89P	rs4699165-A	0.3569	1E-10		0.1377	[0.096-0.18] unit increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1394	chr4	106113682	106113683	rs17583593	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	154,355 East Asian ancestry individuals	NA	4q24		rs17583593-C	0.221259	5E-10		0.0254406	[0.017-0.033] unit decrease	Illumina [13479091] (imputed)	N
1394	chr4	106116214	106116214	rs139887111	26423011	Wain LV	2015-09-27	Lancet Respir Med	Novel insights into the genetics of smoking behaviour, lung function, and chronic obstructive pulmonary disease (UK BiLEVE): a genetic association study in UK Biobank.	Lung function (low FEV1 vs high FEV1)	19,493 European ancestry individuals with low FEV1 measurements, 9,808 European ancestry individuals with high FEV1 measurements	NA	4q24	TET2	rs139887111-A	NR	1E-8		0.117	[0.076-0.158] unit increase	Affymetrix [28509962] (imputed)	N
1394	chr4	106116960	106116961	rs1391440	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	4q24	TET2	rs1391440-C	NR	5E-15		0.023447372	[0.018-0.029] unit increase	Affymetrix [NR]	N
1394	chr4	106120755	106120756	rs11726786	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	4q24	TET2	rs11726786-T	NR	2E-15		0.024831967	[0.019-0.031] unit increase	Affymetrix [NR]	N
1394	chr4	106120755	106120756	rs11726786	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability (MTAG)	436,124 European ancestry individuals	NA	4q24	TET2	rs11726786-?	NR	5E-12		6.898	z score increase	Affymetrix, Illumina, Perlegen [7333576] (imputed)	N
1394	chr4	106120755	106120756	rs11726786	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability	107,207 European ancestry individuals	NA	4q24	TET2	rs11726786-?	NR	1E-8		5.684	z score increase	Affymetrix, Illumina [7357080] (imputed)	N
1394	chr4	106123581	106123582	rs2047408	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	4q24	TET2	rs2047408-C	0.669888	2E-12		0.01963624	[0.014-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1394	chr4	106123581	106123582	rs2047408	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	4q24	TET2	rs2047408-C	0.669908	7E-19		0.024518501	[0.019-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
1394	chr4	106123637	106123638	rs78632895	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	4q24	TET2	rs78632895-T	NR	2E-8		0.0243484	[0.016-0.033] unit decrease	Affymetrix [319769] (imputed)	N
1394	chr4	106123637	106123638	rs78632895	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	4q24	TET2	rs78632895-T	NR	7E-9		0.025042	[0.017-0.034] unit decrease	Affymetrix [319769] (imputed)	N
1394	chr4	106125021	106125022	rs75321784	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	4q24	TET2	rs75321784-G	NR	1E-10		0.0279753	[0.019-0.037] unit decrease	Affymetrix [321114] (imputed)	N
1394	chr4	106125021	106125022	rs75321784	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	4q24	TET2	rs75321784-G	NR	9E-11		0.0282352	[0.02-0.037] unit decrease	Affymetrix [321169] (imputed)	N
1394	chr4	106125385	106125387	rs546941547	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	4q24		rs546941547-A	NR	6E-9		0.0113	[0.0076-0.015] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
1394	chr4	106125385	106125387	rs546941547	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	4q24	NR	rs546941547-A	NR	3E-9		0.0142	[0.0095-0.0189] unit decrease	Affymetrix [9000000] (imputed)	N
1394	chr4	106125385	106125387	rs546941547	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	4q24	TET2	rs546941547-A	0.4614	1E-20		0.0334381	[0.026-0.04] unit increase	Affymetrix [~ 2500000] (imputed)	N
1394	chr4	106125385	106125387	rs546941547	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	4q24	TET2	rs546941547-A	0.4615	7E-25		0.03688624	[0.03-0.044] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1394	chr4	106125385	106125387	rs546941547	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	4q24	TET2	rs546941547-A	0.4614	3E-14		0.02754083	[0.02-0.035] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1394	chr4	106126412	106126413	rs988799	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	4q24	TET2	rs988799-G	NR	1E-10		0.0231889	[0.016-0.03] unit decrease	Affymetrix [321788] (imputed)	N
1394	chr4	106126412	106126413	rs988799	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	4q24	NR	rs988799-C	0.7895	4E-10		0.0137	[0.0094-0.018] unit decrease	NR [~ 27400000] (imputed)	N
1394	chr4	106127120	106127121	rs34104813	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	4q24		rs34104813-T	NR	2E-21		0.0214	[0.017-0.026] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
1394	chr4	106128759	106128760	rs1391441	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	4q24	TET2	rs1391441-A	0.3064	2E-8		0.012140111	[0.0079-0.0164] unit decrease	Affymetrix [up to 18485882] (imputed)	N
1394	chr4	106128759	106128760	rs1391441	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	4q24	NR	rs1391441-A	0.66	2E-8		1.05	[1.03-1.07]	Affymetrix, Illumina [16900397] (imputed)	N
1394	chr4	106128953	106128954	rs7663401	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	8,021 European ancestry cases, 16,489 European ancestry controls	NA	4q24		rs7663401-C	NR	3E-8		0.126294	[0.082-0.171] unit decrease	NR [5054572] (imputed)	N
1394	chr4	106128953	106128954	rs7663401	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure	35,269 European ancestry cases, 63,451 European ancestry controls	NA	4q24	NR	rs7663401-C	0.389544	1E-7		1.0764263	[1.05-1.1]	Affymetrix [7791636] (imputed)	N
1394	chr4	106131209	106131210	rs2007403	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	8,021 European ancestry cases, 16,489 European ancestry controls, 2,495 East Asian ancestry cases, 4,283 East Asian ancestry controls	NA	4q24		rs2007403-T	NR	6E-10		0.128134	[0.088-0.169] unit increase	NR [2787054] (imputed)	N
1394	chr4	106131209	106131210	rs2007403	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	4q24		rs2007403-?	NR	2E-39				NR [~ 8900000] (imputed)	N
1394	chr4	106133183	106133184	rs6533183	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	4q24	NR	rs6533183-C	0.35	9E-13		0.91	[0.89-0.94]	Affymetrix [9886854] (imputed)	N
1394	chr4	106133183	106133184	rs6533183	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	4q24	NR	rs6533183-C	0.35	1E-14			[NR]	Affymetrix [9886854] (imputed)	N
1394	chr4	106133183	106133184	rs6533183	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in non-current smokers	16,488 European ancestry cases, 169,688 European ancestry controls	NA	4q24	NR	rs6533183-C	0.35	7E-13		0.91	[0.89-0.93]	Affymetrix [9886854] (imputed)	N
1394	chr4	106133183	106133184	rs6533183	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	4q24	TET2	rs6533183-C	0.352109	7E-16		0.021786	[0.017-0.027] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1394	chr4	106133183	106133184	rs6533183	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	4q24	TET2	rs6533183-T	0.6545	4E-9		0.0156	[0.01-0.021] unit decrease	Affymetrix [19819130] (imputed)	N
1394	chr4	106133183	106133184	rs6533183	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	4q24	TET2	rs6533183-T	0.6545	3E-32		0.0297	[0.025-0.035] unit decrease	Affymetrix [19819130] (imputed)	N
1394	chr4	106133183	106133184	rs6533183	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	4q24	TET2	rs6533183-T	0.6545	5E-18		0.0213	[0.016-0.026] unit decrease	Affymetrix [19819130] (imputed)	N
1394	chr4	106134315	106134316	rs6855629	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	4q24	KIAA1546	rs6855629-G	0.63	2E-8		1.14	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
1394	chr4	106135315	106135316	rs62332760	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	4q24	NR	rs62332760-?		8E-11		0.0144128	[0.01-0.019] unit decrease	Affymetrix [19400418] (imputed)	N
1394	chr4	106137032	106137033	rs2047409	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	4q24	TET2	rs2047409-A	0.63	2E-19	(conditional on rs34712979)	1.1	[NR]	Affymetrix, Illumina [6224355] (imputed)	N
1394	chr4	106137032	106137033	rs2047409	28166215	Hobbs BD	2017-02-06	Nat Genet	Genetic loci associated with chronic obstructive pulmonary disease overlap with loci for lung function and pulmonary fibrosis.	Chronic obstructive pulmonary disease	11,157 European ancestry cases, 36,699 European ancestry controls, 1,142 African American cases, 2,380 African American controls, 199 Korean ancestry cases, 6,741 Korean ancestry controls, 52 Hispanic cases, 548 Hispanic controls.	12,051 European ancestry cases, 11,111 European ancestry controls, 153 Korean ancestry cases, 205 Korean ancestry controls.	4q24	TET2	rs2047409-A	0.62	2E-13		1.12	[1.08-1.15]	Affymetrix, Illumina [NR] (imputed)	N
1394	chr4	106137032	106137033	rs2047409	26423011	Wain LV	2015-09-27	Lancet Respir Med	Novel insights into the genetics of smoking behaviour, lung function, and chronic obstructive pulmonary disease (UK BiLEVE): a genetic association study in UK Biobank.	Lung function in never smokers (low FEV1 vs high FEV1)	9,745 European ancestry individuals with low FEV1 measurements, 4,902 European ancestry individuals with high FEV1 measurements	NA	4q24	TET2	rs2047409-A	NR	1E-8		1.17	[1.11-1.23]	Affymetrix [28509962] (imputed)	N
1394	chr4	106137032	106137033	rs2047409	26423011	Wain LV	2015-09-27	Lancet Respir Med	Novel insights into the genetics of smoking behaviour, lung function, and chronic obstructive pulmonary disease (UK BiLEVE): a genetic association study in UK Biobank.	Lung function in never smokers (low FEV1 vs average FEV1)	9,745 European ancestry individuals with low FEV1 measurements, 9,827 European ancestry individuals with average FEV1 measurements	NA	4q24	NR	rs2047409-?	NR	5E-7		1.115	[1.069-1.164]	Affymetrix [28509962] (imputed)	N
1394	chr4	106139386	106139387	rs4698934	24980573	Song F	2014-06-30	Carcinogenesis	Identification of a melanoma susceptibility locus and somatic mutation in TET2.	Melanoma	494 European ancestry cases, 5,628 European ancestry controls	5,383 European ancestry cases, 13,033 European ancestry controls	4q24	TET2	rs4698934-?		8E-7		1.18	[1.10-1.25]	Affymetrix, Illumina [1579307] (imputed)	N
1394	chr4	106143491	106143492	rs62332762	33287642	Said MA	2020-12-08	J Am Heart Assoc	Associations of Observational and Genetically Determined Caffeine Intake With Coronary Artery Disease and Diabetes Mellitus.	Caffeine consumption from coffee or tea	362,316 European ancestry individuals	NA	4q24	TET2	rs62332762-C	0.597585	1E-14		0.01828	[0.014-0.023] unit increase	Affymetrix [19400838] (imputed)	N
1394	chr4	106144734	106144735	rs6839705	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	4q24		rs6839705-A	0.3601	4E-10		49.73505	z score increase	NR [6814003]	N
1394	chr4	106144734	106144735	rs6839705	33888516	Zheng T	2021-04-22	Gut	Genome-wide analysis of 944 133 individuals provides insights into the etiology of haemorrhoidal disease.	Haemorrhoidal disease	218,920 European ancestry cases, 725,213 European ancestry controls	NA	4q24	TET2	rs6839705-?	0.3723	5E-12		1.03	[1.02-1.04]	Affymetrix, Illumina [8494288] (imputed)	N
1394	chr4	106144734	106144735	rs6839705	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	4q24	TET2	rs6839705-A	0.359	1E-21		0.0118	[0.0094-0.0142] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
1394	chr4	106144734	106144735	rs6839705	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	4q24	TET2	rs6839705-A	NR	1E-10		0.019800112	[0.014-0.026] unit increase	Affymetrix [NR]	N
1394	chr4	106144734	106144735	rs6839705	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	4q24	NR	rs6839705-A	0.3565	1E-10		0.014938266	NR unit increase	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
1394	chr4	106148757	106148758	rs7674220	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	4q24	TET2	rs7674220-?	NR	1E-11		0.013915018	[0.0099-0.0179] unit decrease	NR [7306098]	N
1394	chr4	106148757	106148758	rs7674220	31097437	Plotnikov D	2019-05-16	Br J Ophthalmol	Association between birth weight and refractive error in adulthood: a Mendelian randomisation study.	Birth weight	188,039 European ancestry individuals	NA	4q24	NR	rs7674220-C	0.36	1E-14		0.026	[0.02-0.032] z score decrease	Affymetrix [up to 10400000] (imputed)	N
1394	chr4	106150554	106150555	rs143875052	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	4q24		rs143875052-?	NR	7E-14				NR [~ 8900000] (imputed)	N
1394	chr4	106151641	106151642	rs1391439	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	4q24	TET2	rs1391439-G	0.4	3E-12		1.06	[1.05-1.07]	Illumina [at least 560000] (imputed)	N
1394	chr4	106151641	106151642	rs1391439	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	4q24	TET2	rs1391439-?	NR	3E-12		1.06	[1.043-1.077]	Illumina [13757430] (imputed)	N
1394	chr4	106151842	106151843	rs1391438	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	4q24		rs1391438-?	NR	2E-16				NR [~ 8900000] (imputed)	N
1394	chr4	106151842	106151843	rs1391438	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	4q24	NR	rs1391438-T	NR	2E-11		6.701	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1394	chr4	106151842	106151843	rs1391438	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	4q24	TET2	rs1391438-T	NR	2E-10		6.372	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1394	chr4	106152983	106152984	rs7683416	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	4q24	Intergenic	rs7683416-T	0.4732	2E-19	(MTAG)	0.0149	[0.012-0.018] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1394	chr4	106152983	106152984	rs7683416	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	4q24		rs7683416-T	0.4592	6E-23		0.0139	[0.011-0.017] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1394	chr4	106152983	106152984	rs7683416	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	4q24	Intergenic	rs7683416-T	0.4592	4E-26	(MTAG)	0.0139	[0.011-0.016] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1394	chr4	106152983	106152984	rs7683416	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	4q24	TET2	rs7683416-T	NR	4E-15		7.849	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1394	chr4	106156186	106156187	rs17253672	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	4q24	TET2	rs17253672-T	NR	2E-8		0.0351126	[0.023-0.047] unit decrease	Affymetrix [319769] (imputed)	N
1394	chr4	106156186	106156187	rs17253672	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	4q24	TET2	rs17253672-T	NR	2E-11		0.0421531	[0.03-0.055] unit decrease	Affymetrix [321114] (imputed)	N
1394	chr4	106156186	106156187	rs17253672	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	4q24	TET2	rs17253672-T	NR	9E-10		0.0387491	[0.026-0.051] unit decrease	Affymetrix [321169] (imputed)	N
1394	chr4	106156186	106156187	rs17253672	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	4q24	NR	rs17253672-T	NR	4E-10		0.0338	[0.023-0.044] unit increase	Affymetrix [9000000] (imputed)	N
1394	chr4	106156186	106156187	rs17253672	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	4q24	NR	rs17253672-?	NR	4E-14				Affymetrix [~ 8270000] (imputed)	N
1394	chr4	106160132	106160133	rs56185013	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	4q24	TET2	rs56185013-A	NR	2E-9		0.0205052	[0.014-0.027] unit decrease	Affymetrix [319769] (imputed)	N
1394	chr4	106160132	106160133	rs56185013	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	4q24	TET2	rs56185013-A	NR	2E-9		0.020534	[0.014-0.027] unit decrease	Affymetrix [319769] (imputed)	N
1394	chr4	106160132	106160133	rs56185013	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	4q24	TET2	rs56185013-A	NR	7E-9		0.019849	[0.013-0.027] unit decrease	Affymetrix [321169] (imputed)	N
1394	chr4	106160132	106160133	rs56185013	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	4q24	NR	rs56185013-?	NR	8E-16				Affymetrix [~ 8270000] (imputed)	N
1394	chr4	106160132	106160133	rs56185013	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	4q24		rs56185013-?	NR	2E-15				NR [~ 8900000] (imputed)	N
1395	chr4	106173198	106173199	rs2726518	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	4q24		rs2726518-A	0.4411	1E-23	(conditional-joint)	0.0142	[0.011-0.017] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1395	chr4	106173198	106173199	rs2726518	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	4q24	TET2	rs2726518-C	0.58	4E-8		1.07		Illumina [161311]	N
1395	chr4	106178288	106178289	rs2133086	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	4q24	TET2	rs2133086-A	0.4812	8E-14		0.014520518	[0.011-0.018] unit increase	Illumina [9339358] (imputed)	N
1395	chr4	106180263	106180264	rs992493	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	4q24		rs992493-T	0.185	2E-10		0.01	[0.0061-0.0139] unit increase	NR [NR] (imputed)	N
1395	chr4	106180263	106180264	rs992493	30271922	Clifton EAD	2018-05-03	Commun Biol	Genome-wide association study for risk taking propensity indicates shared pathways with body mass index.	Self-reported risk-taking behaviour	113,882 European ancestry cases, 322,354 European ancestry controls	NA	4q24	TET2	rs992493-T	0.19	3E-10		1.033	[1.023-1.043]	Affymetrix [7736308] (imputed)	N
1395	chr4	106180263	106180264	rs992493	30181555	Strawbridge RJ	2018-09-04	Transl Psychiatry	Genetics of self-reported risk-taking behaviour, trans-ethnic consistency and relevance to brain gene expression.	Self-reported risk-taking behaviour	83,677 British ancestry cases, 244,662 British ancestry controls	2,764 South Asian ancestry cases, 3,139 African Caribbean ancestry cases, 16,169 European ancestry cases, 3,866 mixed ancestry cases, 4,267 South Asian ancestry controls, 4,341 African Caribbean ancestry controls, 31,814 European ancestry controls, 5,988 mixed ancestry controls	4q24	NR	rs992493-T	0.19	4E-8		0.034	[0.022-0.046] unit increase	Affymetrix [NR] (imputed)	N
1395	chr4	106184228	106184229	rs2454205	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	4q24	NR	rs2454205-T	NR	3E-17		8.453	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1395	chr4	106185662	106185663	rs2647249	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	4q24	NR	rs2647249-?	NR	3E-10				Affymetrix [~ 8270000] (imputed)	N
1395	chr4	106185662	106185663	rs2647249	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	4q24	NR	rs2647249-T	NR	2E-9		5.962	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1395	chr4	106185662	106185663	rs2647249	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	4q24	TET2	rs2647249-T	NR	4E-9		5.902	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1395	chr4	106192456	106192457	rs1498126	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	4q24	NR	rs1498126-C	0.78	6E-14		0.017	[0.013-0.021] unit increase	Affymetrix [2446094] (imputed)	N
1395	chr4	106192456	106192457	rs1498126	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	4q24	NR	rs1498126-C	0.78	5E-8				Affymetrix [2446094] (imputed)	N
1395	chr4	106193333	106193334	rs2726519	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	4q24	NR	rs2726519-C	0.544122	5E-9		0.0395523	[0.026-0.053] unit decrease	Affymetrix [17914406] (imputed)	N
1395	chr4	106195540	106195541	rs2726492	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	4q24	NR	rs2726492-C	0.7943	4E-10	(EA)	0.0475	[0.033-0.062] unit decrease	Illumina [~ 11800000] (imputed)	N
1395	chr4	106196828	106196829	rs34402524	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Prostate cancer	7,438 White British ancestry cases, 118,206 White British ancestry controls	NA	4q24		rs34402524-?	NR	5E-6		0.884388	[0.83-0.94]	NR [680312]	N
1395	chr4	106196950	106196951	rs2454206	33909500	Moll M	2021-04-28	Am J Physiol Lung Cell Mol Physiol	A Systematic Analysis of Protein-altering Exonic Variants in Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease	up to 31,465 European ancestry cases, up to 203,688 European ancestry controls, up to 1,413 African ancestry cases, up to 6,080 African ancestry controls, up to 287 East Asian ancestry cases, up to 7,484 East Asian ancestry controls, up to 61 Hispanic cases, up to 613 Hispanic controls	NA	4q24	TET2	rs2454206-G	0.38	2E-10		1.07	[1.05 -1.09]	Illumina [at least 109036]	N
1395	chr4	106196950	106196951	rs2454206	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	4q24		rs2454206-A	0.6235	5E-8		0.08477454	[0.053-0.116] mmHg decrease	Affymetrix, Illumina [242866] (imputed)	N
1395	chr4	106196950	106196951	rs2454206	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	4q24	TET2	rs2454206-A	0.79	6E-9		0.027	[0.013-0.041] unit increase	Affymetrix, Illumina [2704730] (imputed)	N
1395	chr4	106196976	106196977	rs73838071	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q24	TET2	rs73838071-A	0.997	3E-6	(AA)	0.154	unit increase	Illumina [NR] (imputed)	N
1395	chr4	106196999	106197000	rs62621450	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	4q24		rs62621450-A	0.969	9E-14				Affymetrix [10369434] (imputed)	N
1395	chr4	106197749	106197750	rs60786079	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	4q24	TET2	rs60786079-A	0.0307	2E-10		0.06698574	[0.046-0.088] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1395	chr4	106199504	106199505	rs2647257	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	4q24	PPA2	rs2647257-A	0.6146	5E-11		0.017428176	[0.012-0.023] unit increase	Affymetrix [~ 11515000] (imputed)	N
1395	chr4	106199504	106199505	rs2647257	29520040	Coleman JRI	2018-03-08	Mol Psychiatry	Biological annotation of genetic loci associated with intelligence in a meta-analysis of 87,740 individuals.	Extremely high intelligence	1,247 European ancestry cases, 86,493 European ancestry controls	NA	4q24	PPA2, TET2	rs2647257-A	0.636	3E-8		5.54	NR z score increase increase	Illumina [up to 12595966] (imputed)	N
1395	chr4	106200634	106200635	rs143847362	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	4q24	TET2	rs143847362-A	0.9745	3E-12		0.0423	[0.031-0.054] unit increase	Affymetrix [18391927] (imputed)	N
1395	chr4	106201555	106201556	rs2647256	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	4q24	PPA2	rs2647256-T	0.1888	7E-13		0.021707911	[0.016-0.028] unit increase	Affymetrix [11515109] (imputed)	N
1395	chr4	106202632	106202633	rs904274	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	4q24	TET2	rs904274-A	0.043965	5E-16		0.04534611	[0.034-0.056] unit decrease	Affymetrix [93095623] (imputed)	N
1395	chr4	106207762	106207763	rs113693454	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	4q24		rs113693454-A	0.031731	7E-22		0.061860364	[0.049-0.074] unit decrease	Affymetrix [93095623] (imputed)	N
1395	chr4	106212561	106212562	rs2726491	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	4q24	NR	rs2726491-?	NR	4E-7	(female)	0.12463	[0.076-0.173] unit decrease	Affymetrix [7794483] (imputed)	N
1395	chr4	106212561	106212562	rs2726491	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	4q24	NR	rs2726491-?	NR	2E-6	(male)	0.17052	[0.1-0.24] unit decrease	Affymetrix [7794483] (imputed)	N
1395	chr4	106212561	106212562	rs2726491	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	4q24	NR	rs2726491-?	NR	2E-11		0.15157	[0.11-0.2] unit decrease	Affymetrix [7794483] (imputed)	N
1395	chr4	106212561	106212562	rs2726491	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	4q24	NR	rs2726491-A	NR	4E-23		9.9	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1395	chr4	106213873	106213874	rs6533185	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	151,807 East Asian ancestry individuals	NA	4q24	NR	rs6533185-G	0.71592	5E-10		0.025086	[0.017-0.033] SD units increase	Affymetrix, Illumina [16710636] (imputed)	N
1395	chr4	106213986	106213987	rs2133084	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	4q24		rs2133084-G	0.532741	1E-11		0.018755	[0.013-0.024] unit decrease	Illumina [13479924] (imputed)	N
1395	chr4	106214002	106214003	rs6533186	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	4q24		rs6533186-A	0.285542	4E-9		0.0216076	[0.014-0.029] unit decrease	Illumina [13478928] (imputed)	N
1395	chr4	106214475	106214476	rs57692580	31263887	Adams MJ	2019-07-01	Int J Epidemiol	Factors associated with sharing e-mail information and mental health survey participation in large population cohorts.	Mental health study participation (completed survey)	122,647 British ancestry cases, 248,781 British ancestry controls	NA	4q24	RN7SL89P	rs57692580-A	0.39	3E-8		0.0061513	[0.004-0.0083] unit decrease	NR [16367095] (imputed)	N
1395	chr4	106215108	106215109	rs200768290	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Verbal-numerical reasoning	171,304 British ancestry individuals	NA	4q24		rs200768290-?	NR	8E-16				NR [7857346] (imputed)	N
1395	chr4	106216666	106216667	rs2101975	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	4q24		rs2101975-G	NR	3E-13		0.0154	[0.011-0.02] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
1395	chr4	106216666	106216667	rs2101975	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	4q24		rs2101975-G	NR	2E-26		0.0225	[0.018-0.027] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
1395	chr4	106216666	106216667	rs2101975	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	4q24		rs2101975-A	0.567	6E-36				Affymetrix [10369434] (imputed)	N
1395	chr4	106216666	106216667	rs2101975	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	4q24		rs2101975-A	0.567	4E-12				Affymetrix [10369434] (imputed)	N
1395	chr4	106216666	106216667	rs2101975	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	4q24	RN7SL89P	rs2101975-G	0.432116	1E-40		0.029815175	[0.025-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
1395	chr4	106216666	106216667	rs2101975	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q24	NR	rs2101975-G	0.449711	1E-45				Affymetrix, Illumina [23472807] (imputed)	N
1395	chr4	106216666	106216667	rs2101975	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	4q24	NR	rs2101975-G	0.430762	7E-45		0.026897	[0.023-0.031] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1395	chr4	106216666	106216667	rs2101975	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	4q24	RN7SL89P	rs2101975-A	NR	4E-19		0.026954852	[0.021-0.033] unit increase	Affymetrix [NR]	N
1395	chr4	106216800	106216800	rs544505467	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	4q24	RN7SL89P	rs544505467-T	0.6138	5E-49		0.0288	[0.025-0.033] unit increase	Affymetrix [18391927] (imputed)	N
1395	chr4	106217357	106217358	rs2726513	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	4q24	NR	rs2726513-G	0.402584	7E-19		0.05724985	[0.045-0.07] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1395	chr4	106217357	106217358	rs2726513	33287642	Said MA	2020-12-08	J Am Heart Assoc	Associations of Observational and Genetically Determined Caffeine Intake With Coronary Artery Disease and Diabetes Mellitus.	Caffeine consumption from coffee	373,522 European ancestry individuals	NA	4q24	TET2	rs2726513-G	0.587077	7E-11		0.015301	[0.011-0.02] unit increase	Affymetrix [19400838] (imputed)	N
1395	chr4	106217357	106217358	rs2726513	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	4q24	Intergenic	rs2726513-T	0.3919	3E-13	(MTAG)	0.0134	[0.0099-0.0169] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1395	chr4	106217357	106217358	rs2726513	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	4q24	Intergenic	rs2726513-T	0.4069	4E-25	(MTAG)	0.0242	[0.02-0.029] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1395	chr4	106217357	106217358	rs2726513	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	4q24	Intergenic	rs2726513-T	0.4069	2E-19		0.0261	[0.02-0.032] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
1395	chr4	106217357	106217358	rs2726513	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	4q24	RN7SL89P	rs2726513-T	NR	5E-18		8.648	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1395	chr4	106219138	106219139	rs1603705	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	4q24	NR	rs1603705-A	NR	9E-9		5.747	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1395	chr4	106220557	106220558	rs2466920	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	4q24	RN7SL89P	rs2466920-G	0.4058	5E-12		0.0141470125	[0.01-0.018] unit decrease	Affymetrix [up to 18485882] (imputed)	N
1395	chr4	106220557	106220558	rs2466920	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	4q24	RN7SL89P	rs2466920-T	NR	3E-16		0.025382452	[0.019-0.031] unit increase	Affymetrix [NR]	N
1395	chr4	106230147	106230148	rs532320857	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	4q24	NR	rs532320857-C	0.996024	4E-9		0.17087	[0.11-0.23] unit increase	Affymetrix [16577424] (imputed)	N
1395	chr4	106233358	106233359	rs2647261	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	4q24	RN7SL89P	rs2647261-A	NR	1E-10		0.020617401	[0.014-0.027] unit decrease	Affymetrix [NR]	N
1395	chr4	106249372	106249373	rs184332034	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	4q24		rs184332034-?	NR	1E-27				NR [~ 8900000] (imputed)	N
1395	chr4	106254605	106254606	rs2726478	29970889	Day FR	2018-07-03	Nat Commun	Elucidating the genetic basis of social interaction and isolation.	Regular attendance at a religious group	66,259 European ancestry cases, 386,043 European ancestry controls	NA	4q24	TET2, PPA2, ARHGEF38, ARHGEF38-IT1	rs2726478-T	0.582956	5E-9		0.00431314	[0.0029-0.0058] unit increase	NR [NR] (imputed)	N
1395	chr4	106255588	106255589	rs2726479	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	4q24	TET2	rs2726479-C	NR	4E-11		1.0674636	NR	Affymetrix, Illumina [8278136] (imputed)	N
1395	chr4	106258988	106258989	rs17321073	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	4q24	PPA2	rs17321073-A	NR	6E-9		5.827	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1395	chr4	106259571	106259572	rs2726481	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	4q24	NR	rs2726481-?	NR	6E-10		0.0522	[0.036-0.069] unit increase	Illumina [at least 560000] (imputed)	N
1395	chr4	106260426	106260427	rs17321108	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Nevus count or cutaneous melanoma	36,760 European ancestry cutaneous melanoma cases, 375,188 European ancestry controls, 12,930 European ancestry individuals, 52,847 individuals	NA	4q24	RN7SL89P	rs17321108-C	0.9599168	1E-8				Affymetrix, Illumina [NR] (imputed)	N
1395	chr4	106260990	106260991	rs2647234	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	4q24	PPA2	rs2647234-C	0.4288	2E-10		0.013124438	[0.0091-0.0171] unit decrease	Affymetrix [up to 18485882] (imputed)	N
1395	chr4	106264588	106264589	rs2647237	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	4q24	NR	rs2647237-C	NR	3E-13		0.0195	[0.014-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
1395	chr4	106264780	106264781	rs78280128	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	4q24	PPA2	rs78280128-G	0.07773	2E-8		0.020772696	[0.013-0.028] unit increase	Affymetrix [up to 18485882] (imputed)	N
1395	chr4	106267236	106267237	rs2647262	30279531	Baselmans BML	2018-10-02	Sci Rep	A genetic perspective on the relationship between eudaimonic -and hedonic well-being.	Eudaimonic well-being	108,154 British ancestry individuals	NA	4q24	NR	rs2647262-A	0.388318	7E-8		5.38214	[NR] z score increase	Affymetrix [~ 8600000] (imputed)	N
1395	chr4	106267728	106267729	rs2647263	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	4q24	PPA2	rs2647263-T	NR	3E-16		0.02542955	[0.019-0.032] unit increase	Affymetrix [NR]	N
1395	chr4	106268593	106268594	rs2647264	22658931	Pajewski NM	2012-05-30	Vaccine	A genome-wide association study of host genetic determinants of the antibody response to Anthrax Vaccine Adsorbed.	Immune response to anthrax vaccine	726 European ancestry individuals	NA	4q24	TET2, PPA2	rs2647264-G	NR	9E-6		0.165	[0.092-0.238] unit increase	Affymetrix [736996]	N
1395	chr4	106269288	106269289	rs59449492	31504550	Bradfield JP	2019-07-05	Hum Mol Genet	A Trans-ancestral Meta-Analysis of Genome-Wide Association Studies Reveals Loci Associated with Childhood Obesity.	Childhood obesity	8,613 European ancestry cases, 3,213 African American cases, 69 Moroccan ancestry cases, 986 Hispanic/Latino cases, 124 East Asian ancestry cases, 12,696 European ancestry controls, 1,392 African American controls, 64 Moroccan ancestry controls, 993 Hispanic/Latino controls, 454 East Asian ancestry controls	NA	4q24	NR	rs59449492-T	NR	4E-6	(African)	0.5547	[0.32-0.79] unit decrease	Affymetrix, Illumina [up to 15123508] (imputed)	N
1395	chr4	106270290	106270291	rs2647266	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	4q24	PPA2	rs2647266-G	NR	7E-10		0.0191142	[0.013-0.025] unit decrease	Affymetrix [323123] (imputed)	N
1395	chr4	106287353	106287354	rs2713844	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	4q24	NR	rs2713844-A	0.7632	3E-10		0.00165	[0.0011-0.0022] unit decrease	Affymetrix [NR] (imputed)	N
1395	chr4	106297512	106297513	rs2636697	23241943	Clark SL	2012-12-12	Pharmacogenet Genomics	Genome-wide association study of patient-rated and clinician-rated global impression of severity during antipsychotic treatment.	Response to antipsychotic treatment	Up to 421 European ancestry Schizophrenia cases, up to 214 African American individuals, up to 103 individuals	NA	4q24	PPA2	rs2636697-G	0.038	4E-7	(Effect of Risperidone on CGI-S)			Affymetrix [492900]	N
1396	chr4	106312812	106312813	rs2636699	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	4q24	PPA2	rs2636699-T	NR	3E-11		6.641	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1396	chr4	106316426	106316427	rs2726528	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	4q24	NR	rs2726528-T	NR	1E-13		7.445	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1396	chr4	106319835	106319836	rs2726453	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	4q24	PPA2	rs2726453-T	NR	8E-10		0.018657072	[0.013-0.025] unit increase	Affymetrix [NR]	N
1396	chr4	106325899	106325900	rs9992793	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	4q24	NR	rs9992793-T	NR	1E-10		6.415	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1396	chr4	106325899	106325900	rs9992793	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	4q24	NR	rs9992793-?	NR	1E-7		5.273	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1396	chr4	106336140	106336141	rs147510742	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	4q24	PPA2	rs147510742-C	0.022686	8E-9		0.04390991	[0.029-0.059] unit increase	Affymetrix [93095623] (imputed)	N
1396	chr4	106356760	106356761	rs77928427	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	4q24	NR	rs77928427-A	0.2392	3E-8	(EA)	0.04	[0.026-0.054] unit increase	Illumina [~ 11800000] (imputed)	N
1396	chr4	106358130	106358131	rs148389026	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	4q24		rs148389026-?	NR	5E-11				NR [~ 8900000] (imputed)	N
1396	chr4	106359626	106359627	rs2636734	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	4q24	NR	rs2636734-?	NR	6E-8		0.0449	[0.029-0.061] unit increase	Illumina [at least 560000] (imputed)	N
1396	chr4	106378283	106378284	rs2522545	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	4q24		rs2522545-T	0.4083	6E-9		0.0083	[0.0056-0.011] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1396	chr4	106388103	106388104	rs72954323	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	4q24		rs72954323-?	NR	4E-11				NR [~ 8900000] (imputed)	N
1396	chr4	106394925	106394926	rs17035642	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	4q24	NR	rs17035642-A	NR	2E-11		0.03	[0.021-0.039] unit increase	Affymetrix [9000000] (imputed)	N
1396	chr4	106410854	106410855	rs1490612	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	4q24	Intergenic	rs1490612-T	0.0772	2E-11	(MTAG)	0.0208	[0.015-0.027] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1396	chr4	106410854	106410855	rs1490612	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	4q24		rs1490612-T	0.078	2E-13		0.0193	[0.014-0.024] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1396	chr4	106410854	106410855	rs1490612	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	4q24	Intergenic	rs1490612-T	0.078	2E-14	(MTAG)	0.0187	[0.014-0.023] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1397	chr4	106451310	106451311	rs12499086	22566634	Benjamin DJ	2012-05-07	Proc Natl Acad Sci U S A	The genetic architecture of economic and political preferences.	Economic and political preferences (time)	9,617 European ancestry individuals	NA	4q24	intergenic	rs12499086-G	NR	2E-6		0.129	[0.076-0.182] unit decrease	Illumina [628922]	N
1397	chr4	106457329	106457330	rs7669317	19875103	Aberg K	2009-10-27	Biol Psychiatry	Genomewide association study of movement-related adverse antipsychotic effects.	Response to antipsychotic therapy (extrapyramidal side effects)	421 European ancestry schizophrenia cases, 214 African American schizophrenia cases, 103 schizophrenia cases	NA	4q24	intergenic	rs7669317-?	NR	8E-8	(AIMS)			Affymetrix [492000]	N
1397	chr4	106463712	106463713	rs11730243	22566634	Benjamin DJ	2012-05-07	Proc Natl Acad Sci U S A	The genetic architecture of economic and political preferences.	Economic and political preferences (time)	9,617 European ancestry individuals	NA	4q24	intergenic	rs11730243-T	NR	2E-6		0.129	[0.076-0.182] unit increase	Illumina [628922]	N
1397	chr4	106472903	106472904	rs17035736	30621171	Coltell O	2019-01-04	Nutrients	Genome-Wide Association Study (GWAS) on Bilirubin Concentrations in Subjects with Metabolic Syndrome: Sex-Specific GWAS Analysis and Gene-Diet Interactions in a Mediterranean Population.	Serum bilirubin levels in metabolic syndrome	188 European ancestry male individuals, 242 European ancestry female individuals	NA	4q24	ARHGEF38	rs17035736-G	0.058	4E-6	(men)	0.484	[0.28-0.68] mg/dL increase	Illumina [622468]	N
1397	chr4	106479424	106479425	rs17509136	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	4q24	NR	rs17509136-A	NR	2E-9		0.021	[0.014-0.028] unit increase	Affymetrix [9000000] (imputed)	N
1397	chr4	106517448	106517449	rs28402213	30498476	Liu H	2018-11-15	Front Endocrinol (Lausanne)	Heritability and Genome-Wide Association Study of Plasma Cholesterol in Chinese Adult Twins.	High density lipoprotein cholesterol levels	139 Chinese ancestry dizygotic twin pairs	NA	4q24	ARHGEF38	rs28402213-?		8E-7				Illumina [7405822] (imputed)	N
1397	chr4	106520741	106520742	rs17035917	28166215	Hobbs BD	2017-02-06	Nat Genet	Genetic loci associated with chronic obstructive pulmonary disease overlap with loci for lung function and pulmonary fibrosis.	Chronic obstructive pulmonary disease	11,157 European ancestry cases, 36,699 European ancestry controls, 1,142 African American cases, 2,380 African American controls, 199 Korean ancestry cases, 6,741 Korean ancestry controls, 52 Hispanic cases, 548 Hispanic controls.	12,051 European ancestry cases, 11,111 European ancestry controls, 153 Korean ancestry cases, 205 Korean ancestry controls.	4q24	ARHGEF38	rs17035917-C	0.936	3E-10		1.208	[1.107-1.319] (Stage 1 meta-analysis)	Affymetrix, Illumina [NR] (imputed)	N
1397	chr4	106521865	106521866	rs11730082	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	4q24		rs11730082-?	NR	1E-21				NR [~ 8900000] (imputed)	N
1397	chr4	106523931	106523932	rs1374531	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q24	ARHGEF38	rs1374531-A	0.076	2E-6		0.016	unit increase	Illumina [NR] (imputed)	N
1398	chr4	106571092	106571093	rs147137722	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Number of common colds	43,826 European ancestry cases, 15,720 European ancestry controls	NA	4q24	NR	rs147137722-?	NR	4E-6		0.1788	[0.1-0.26] unit increase	Illumina [at least 560000] (imputed)	N
1398	chr4	106578753	106578754	rs1982346	24023788	Ong BA	2013-09-02	PLoS One	Gene network analysis in a pediatric cohort identifies novel lung function genes.	Lung function (FEV1)	1,015 European ancestry individuals, 541 African American individuals	NA	4q24	GSTCD, INTS12	rs1982346-?	NR	1E-7				Illumina [up to 524000]	N
1398	chr4	106593573	106593574	rs17036090	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	4q24	NR	rs17036090-?	NR	9E-7				Affymetrix [NR]	N
1398	chr4	106617135	106617136	rs112037309	28548082	Southam L	2017-05-26	Nat Commun	Whole genome sequencing and imputation in isolated populations identify genetic associations with medically-relevant complex traits.	Weight	up to 1,476 Mylopotamos (founder/genetic isolate) individuals, up to 1,737 Pomak (founder/genetic isolate) individuals	NA	4q24	INTS12, ARHGEF38	rs112037309-A	0.075	3E-8		0.287	[0.19-0.39] unit increase	Illumina [at least 13541454] (imputed)	N
1398	chr4	106619139	106619140	rs11727189	20010835	Hancock DB	2009-12-13	Nat Genet	Meta-analyses of genome-wide association studies identify multiple loci associated with pulmonary function.	Pulmonary function	20,890 European ancestry individuals	16,178 European ancestry individuals	4q24	GSTCD, INTS12, NPNT, FLJ20184	rs11727189-T	0.06	5E-17	(FEV1)	64.7	[NR] ml increase	Affymetrix, Illumina [2534500] (imputed)	N
1398	chr4	106624284	106624285	rs76419734	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q24	INTS12	rs76419734-T	0.061	5E-6		0.09	NR unit increase	Illumina [NR] (imputed)	N
1398	chr4	106624501	106624502	rs72671826	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q24	INTS12	rs72671826-T	0.939	5E-6		0.09	NR unit decrease	Illumina [NR] (imputed)	N
1398	chr4	106624528	106624529	rs17036129	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q24	INTS12	rs17036129-T	0.642	4E-6		0.092	NR unit increase	Illumina [NR] (imputed)	N
1398	chr4	106631869	106631870	rs11727735	28166215	Hobbs BD	2017-02-06	Nat Genet	Genetic loci associated with chronic obstructive pulmonary disease overlap with loci for lung function and pulmonary fibrosis.	Chronic obstructive pulmonary disease	11,157 European ancestry cases, 36,699 European ancestry controls, 1,142 African American cases, 2,380 African American controls, 199 Korean ancestry cases, 6,741 Korean ancestry controls, 52 Hispanic cases, 548 Hispanic controls.	12,051 European ancestry cases, 11,111 European ancestry controls, 153 Korean ancestry cases, 205 Korean ancestry controls.	4q24	NPNT, GSTCD	rs11727735-A	0.94	4E-14		1.26	[1.18-1.33]	Affymetrix, Illumina [NR] (imputed)	N
1398	chr4	106631869	106631870	rs11727735	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q24	GSTCD	rs11727735-A	0.062	4E-6		0.092	NR unit decrease	Illumina [NR] (imputed)	N
1398	chr4	106640630	106640631	rs149442660	31376382	Yang C	2019-07-31	J Invest Dermatol	Exome-Wide Rare Loss-of-Function Variant Enrichment Study of 21,347 Han Chinese Individuals Identifies Four Susceptibility Genes for Psoriasis.	Psoriasis	10,668 Chinese ancestry cases, 10,679 Chinese ancestry controls	NA	4q24	GSTCD	rs149442660-?		6E-12		0.03755		NR [66000]	N
1398	chr4	106646348	106646349	rs72671852	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q24	GSTCD	rs72671852-A	0.939	5E-6		0.085	NR unit decrease	Illumina [NR] (imputed)	N
1398	chr4	106662975	106662976	rs17036152	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	4q24	NR	rs17036152-?	NR	2E-9				Affymetrix [NR]	N
1398	chr4	106688903	106688904	rs10516526	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FVC)	48,943 European ancestry individuals.	57,176 European ancestry individuals, 38,199 individuals.	4q24	GSTCD	rs10516526-G	0.0628	8E-6		0.061	[0.034-0.088] unit increase	Affymetrix [27624732] (imputed)	N
1398	chr4	106688903	106688904	rs10516526	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FEV1)	48,943 European ancestry individuals.	57,176 European ancestry individuals, 38,199 individuals.	4q24	GSTCD	rs10516526-G	0.06	4E-8		0.075	[0.048-0.102] unit increase	Affymetrix [up to 27624732] (imputed)	N
1398	chr4	106688903	106688904	rs10516526	20010834	Repapi E	2009-12-13	Nat Genet	Genome-wide association study identifies five loci associated with lung function.	Pulmonary function	20,288 European ancestry individuals	up to 54,276 European ancestry individuals	4q24	GSTCD	rs10516526-G	0.06	2E-23	(FEV1)	0.089	[0.071-0.107] s.d. increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1399	chr4	106718252	106718253	rs72673821	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q24	GSTCD	rs72673821-A	0.074	3E-6		0.088	NR unit increase	Illumina [NR] (imputed)	N
1399	chr4	106739592	106739593	rs10516528	26423011	Wain LV	2015-09-27	Lancet Respir Med	Novel insights into the genetics of smoking behaviour, lung function, and chronic obstructive pulmonary disease (UK BiLEVE): a genetic association study in UK Biobank.	Lung function in never smokers (low FEV1 vs high FEV1)	9,745 European ancestry individuals with low FEV1 measurements, 4,902 European ancestry individuals with high FEV1 measurements	NA	4q24	GSTCD	rs10516528-?	NR	2E-11		1.4306152	[1.29-1.59]	Affymetrix [28509962] (imputed)	N
1399	chr4	106766429	106766430	rs11722225	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	4q24	GSTCD	rs11722225-T	0.9335	1E-8		0.0285	[0.019-0.038] unit decrease	Affymetrix [19819130] (imputed)	N
1399	chr4	106766429	106766430	rs11722225	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	4q24	GSTCD	rs11722225-T	0.9335	2E-32		0.0561	[0.047-0.065] unit decrease	Affymetrix [19819130] (imputed)	N
1399	chr4	106766429	106766430	rs11722225	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	4q24	GSTCD	rs11722225-T	0.9335	2E-23		0.0478	[0.038-0.057] unit decrease	Affymetrix [19819130] (imputed)	N
1399	chr4	106766429	106766430	rs11722225	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	4q24	GSTCD	rs11722225-T	0.9335	2E-54		0.0729	[0.064-0.082] unit decrease	Affymetrix [19819130] (imputed)	N
1399	chr4	106776024	106776025	rs146685629	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	4q24		rs146685629-?	NR	2E-39				NR [~ 8900000] (imputed)	N
1399	chr4	106783595	106783596	rs188605162	33075057	Li X	2020-10-19	PLoS Genet	Automated feature extraction from population wearable device data identified novel loci associated with sleep and circadian rhythms.	Sleep (1/3-day periodicity)	90,515 individuals	NA	4q24	GSTCD	rs188605162-C	NR	4E-8		0.519	[0.33-0.71] unit increase	NR [11024754] (imputed)	N
1399	chr4	106800378	106800379	rs11730660	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q24	Intergenic	rs11730660-A	0.936	4E-6		0.092	NR unit decrease	Illumina [NR] (imputed)	N
1399	chr4	106803681	106803682	rs185538822	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q24	Intergenic	rs185538822-A	0.936	4E-6		0.092	NR unit decrease	Illumina [NR] (imputed)	N
1399	chr4	106805883	106805884	rs187455071	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q24	Intergenic	rs187455071-A	0.936	3E-6		0.093	NR unit decrease	Illumina [NR] (imputed)	N
1399	chr4	106806193	106806194	rs151317012	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q24	Intergenic	rs151317012-T	0.064	3E-6		0.093	NR unit increase	Illumina [NR] (imputed)	N
1399	chr4	106808106	106808107	rs17331332	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q24	Intergenic	rs17331332-A	0.064	3E-6		0.093	NR unit increase	Illumina [NR] (imputed)	N
1399	chr4	106808106	106808107	rs17331332	23284291	Hancock DB	2012-12-20	PLoS Genet	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (smoking interaction)	50,047 European ancestry individuals	NA	4q24	GSTCD, INTS12, NPNT	rs17331332-?	NR	1E-16	(FEV1, Ever-smoking)			NR [~ 2500000] (imputed)	N
1399	chr4	106808180	106808181	rs72673888	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q24	Intergenic	rs72673888-T	0.936	3E-6		0.093	NR unit decrease	Illumina [NR] (imputed)	N
1399	chr4	106810546	106810547	rs72673889	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q24	Intergenic	rs72673889-A	0.936	3E-6		0.094	NR unit decrease	Illumina [NR] (imputed)	N
1399	chr4	106814301	106814302	rs72673891	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	4q24	INTS12	rs72673891-A	0.93	5E-15	(conditional on rs34712979)	1.18	[NR]	Affymetrix, Illumina [6224355] (imputed)	N
1399	chr4	106814301	106814302	rs72673891	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q24	Intergenic	rs72673891-A	0.936	3E-6		0.094	NR unit decrease	Illumina [NR] (imputed)	N
1399	chr4	106819052	106819053	rs34712979	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NPNT	5,364 Icelandic ancestry individuals	NA	4q24		rs34712979-A	0.2528	6E-50		0.316459	[0.27-0.36] unit decrease	Illumina [7506463] (imputed)	N
1399	chr4	106819052	106819053	rs34712979	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Asthma	38,369 European ancestry cases, 411,131 European ancestry controls, 13,015 East Asian ancestry cases, 162,933 East Asian ancestry controls	NA	4q24		rs34712979-A	NR	3E-10		0.0577	[0.04-0.076] unit increase	Affymetrix, Illumina [25837673] (imputed)	N
1399	chr4	106819052	106819053	rs34712979	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	4q24	NR	rs34712979-A	0.25	1E-29		1.23	[1.18-1.27]	Affymetrix [9886854] (imputed)	N
1399	chr4	106819052	106819053	rs34712979	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	4q24	NR	rs34712979-A	0.25	8E-43			[NR]	Affymetrix [9886854] (imputed)	N
1399	chr4	106819052	106819053	rs34712979	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	4q24	NR	rs34712979-A	0.25	3E-39		1.19	[1.16-1.22]	Affymetrix [9886854] (imputed)	N
1399	chr4	106819052	106819053	rs34712979	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	4q24	NR	rs34712979-A	0.25	2E-41			[NR]	Affymetrix [9886854] (imputed)	N
1399	chr4	106819052	106819053	rs34712979	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in non-current smokers	16,488 European ancestry cases, 169,688 European ancestry controls	NA	4q24	NR	rs34712979-A	0.25	6E-39		1.19	[1.16-1.22]	Affymetrix [9886854] (imputed)	N
1399	chr4	106819052	106819053	rs34712979	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in never smokers	8,631 European ancestry cases, 120,544 European ancestry controls	NA	4q24	NR	rs34712979-A	0.25	1E-29		1.23	[1.19-1.27]	Affymetrix [9886854] (imputed)	N
1399	chr4	106819052	106819053	rs34712979	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in ever smokers	12,446 European ancestry cases, 59,145 European ancestry controls	NA	4q24	NR	rs34712979-A	0.25	2E-16		1.15	[1.11-1.19]	Affymetrix [9886854] (imputed)	N
1399	chr4	106819052	106819053	rs34712979	31959851	Olafsdottir TA	2020-01-20	Nat Commun	Eighty-eight variants highlight the role of T cell regulation and airway remodeling in asthma pathogenesis.	Asthma	16,247 European ancestry cases, 346,486 European ancestry controls, 52,942 cases, 355,713 controls	NA	4q24	NPNT, GSTCD, LOC101929529, LOC101929577, TBCK, INTS12	rs34712979-A	0.2581	4E-9		1.04312	[1.03-1.06]	Affymetrix [32463443] (imputed)	N
1399	chr4	106819052	106819053	rs34712979	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	4q24	NPNT	rs34712979-A	0.25	3E-46		1.18	[1.16-1.21]	Affymetrix, Illumina [6224355] (imputed)	N
1399	chr4	106819052	106819053	rs34712979	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	4q24	NPNT	rs34712979-A	0.2561	2E-51		0.0433	[0.038-0.049] unit decrease	Affymetrix [19819130] (imputed)	N
1399	chr4	106819052	106819053	rs34712979	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	4q24	NPNT	rs34712979-A	0.2561	1E-21		0.0261	[0.021-0.031] unit decrease	Affymetrix [19819130] (imputed)	N
1399	chr4	106819052	106819053	rs34712979	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	4q24	NPNT	rs34712979-A	0.2561	4E-134		0.0682	[0.063-0.074] unit decrease	Affymetrix [19819130] (imputed)	N
1399	chr4	106819052	106819053	rs34712979	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	4q24	NPNT	rs34712979-A	0.2561	9E-97		0.0567	[0.051-0.062] unit decrease	Affymetrix [19819130] (imputed)	N
1399	chr4	106819052	106819053	rs34712979	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Respiratory diseases	approximately 459,000 European ancestry individuals	NA	4q24		rs34712979-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1399	chr4	106819052	106819053	rs34712979	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	4q24		rs34712979-?	NR	4E-181				NR [~ 8900000] (imputed)	N
1399	chr4	106819052	106819053	rs34712979	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FVC)	48,943 European ancestry individuals.	57,176 European ancestry individuals, 38,199 individuals.	4q24	NPNT	rs34712979-A	0.262	8E-9		0.044	[0.028-0.06] unit decrease	Affymetrix [27624732] (imputed)	N
1399	chr4	106819052	106819053	rs34712979	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FEV1/FVC)	48,943 European ancestry individuals	57,176 European ancestry individuals, 38,199 individuals.	4q24	NPNT	rs34712979-A	0.262	2E-31		0.087	[0.073-0.101] unit decrease	Affymetrix [27624732] (imputed)	N
1399	chr4	106819052	106819053	rs34712979	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FEV1)	48,943 European ancestry individuals.	57,176 European ancestry individuals, 38,199 individuals.	4q24	NPNT	rs34712979-A	0.26	2E-21		0.072	[0.056-0.088] unit decrease	Affymetrix [up to 27624732] (imputed)	N
1399	chr4	106819052	106819053	rs34712979	26423011	Wain LV	2015-09-27	Lancet Respir Med	Novel insights into the genetics of smoking behaviour, lung function, and chronic obstructive pulmonary disease (UK BiLEVE): a genetic association study in UK Biobank.	Lung function in never smokers (low FEV1 vs high FEV1)	9,745 European ancestry individuals with low FEV1 measurements, 4,902 European ancestry individuals with high FEV1 measurements	NA	4q24	NPNT	rs34712979-A	0.268	1E-15		1.27	[1.20-1.34]	Affymetrix [28509962] (imputed)	N
1399	chr4	106819052	106819053	rs34712979	26423011	Wain LV	2015-09-27	Lancet Respir Med	Novel insights into the genetics of smoking behaviour, lung function, and chronic obstructive pulmonary disease (UK BiLEVE): a genetic association study in UK Biobank.	Lung function in never smokers (low FEV1 vs average FEV1)	9,745 European ancestry individuals with low FEV1 measurements, 9,827 European ancestry individuals with average FEV1 measurements	NA	4q24	NR	rs34712979-?	NR	3E-8		1.138	[1.087-1.191]	Affymetrix [28509962] (imputed)	N
1399	chr4	106819052	106819053	rs34712979	26423011	Wain LV	2015-09-27	Lancet Respir Med	Novel insights into the genetics of smoking behaviour, lung function, and chronic obstructive pulmonary disease (UK BiLEVE): a genetic association study in UK Biobank.	Lung function in heavy smokers (low FEV1 vs high FEV1)	9,748 European ancestry individuals with low FEV1 measurements, 4,906 European ancestry individuals with high FEV1 measurements	NA	4q24	NPNT	rs34712979-A	0.2610	1E-8		1.18	[1.11-1.25]	Affymetrix [28509962] (imputed)	N
1399	chr4	106819052	106819053	rs34712979	26423011	Wain LV	2015-09-27	Lancet Respir Med	Novel insights into the genetics of smoking behaviour, lung function, and chronic obstructive pulmonary disease (UK BiLEVE): a genetic association study in UK Biobank.	Lung function (low FEV1 vs high FEV1)	19,493 European ancestry individuals with low FEV1 measurements, 9,808 European ancestry individuals with high FEV1 measurements	NA	4q24	NPNT	rs34712979-A	NR	3E-20		0.201	[0.16-0.24] unit increase	Affymetrix [28509962] (imputed)	N
1399	chr4	106819612	106819613	rs78213340	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q24	NPNT	rs78213340-T	0.92953125	2E-10	(NPNT, 6342_10_3)	0.3140489	[0.22-0.41] unit increase	Illumina [> 1000000] (imputed)	N
1400	chr4	106841961	106841962	rs6856422	26635082	Soler Artigas M	2015-12-04	Nat Commun	Sixteen new lung function signals identified through 1000 Genomes Project reference panel imputation.	Lung function (FEV1/FVC)	38,199 European ancestry adults	54,550 European ancestry adults, 5,062 children	4q24	NPNT	rs6856422-G	NR	2E-23	(adults)	0.051	[0.041-0.061] unit decrease	Affymetrix, Illumina [8694268] (imputed)	N
1400	chr4	106841961	106841962	rs6856422	26635082	Soler Artigas M	2015-12-04	Nat Commun	Sixteen new lung function signals identified through 1000 Genomes Project reference panel imputation.	Lung function (FEV1)	38,199 European ancestry adults	54,550 European ancestry adults, 5,062 children	4q24	NPNT	rs6856422-G	NR	6E-15	(adults)	0.04	[0.03-0.05] unit decrease	Affymetrix, Illumina [8694268] (imputed)	N
1400	chr4	106843957	106843958	rs7664805	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q24	NPNT	rs7664805-C	0.084	3E-6		0.028	unit decrease	Illumina [NR] (imputed)	N
1400	chr4	106843957	106843958	rs7664805	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q24	NPNT	rs7664805-C	0.085	1E-6		0.141	NR unit decrease	Illumina [NR] (imputed)	N
1400	chr4	106852424	106852425	rs184432546	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (processing speed) x major depressive disorder interaction (2df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	4q24		rs184432546-A	0.99	2E-11				NR [NR] (imputed)	N
1400	chr4	106852424	106852425	rs184432546	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (processing speed)	9,567 European ancestry individuals	NA	4q24		rs184432546-A	0.99	7E-6		0.47	[0.27-0.67] unit decrease	NR [NR] (imputed)	N
1400	chr4	106852424	106852425	rs184432546	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (executive function) x major depressive disorder interaction (2df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	4q24		rs184432546-A	0.99	5E-13				NR [NR] (imputed)	N
1400	chr4	106852424	106852425	rs184432546	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (executive function) x major depressive disorder interaction (1df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	4q24		rs184432546-A	0.99	2E-6		0.98	[0.57-1.39] unit increase	NR [NR] (imputed)	N
1400	chr4	106895665	106895666	rs182971034	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MANBA	5,358 Icelandic ancestry individuals	NA	4q24		rs182971034-C	0.01052	8E-13		0.65819	[0.48-0.84] unit decrease	Illumina [7506463] (imputed)	N
1400	chr4	106910957	106910958	rs56388530	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	4q24		rs56388530-T	NR	4E-13		0.0399	[0.029-0.051] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1400	chr4	106910957	106910958	rs56388530	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls	NA	4q24	NPNT	rs56388530-C	0.240756	2E-8		0.052418575	[0.034-0.071] unit decrease	Affymetrix [7288503] (imputed)	N
1400	chr4	106910957	106910958	rs56388530	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	4q24		rs56388530-?	NR	3E-22				NR [~ 8900000] (imputed)	N
1400	chr4	106910957	106910958	rs56388530	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	4q24		rs56388530-?	NR	3E-17				NR [~ 8900000] (imputed)	N
1400	chr4	106910957	106910958	rs56388530	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	4q24	NPNT	rs56388530-C	0.7315	9E-18		0.3159	[0.24-0.39] mmHg increase	Affymetrix [NR] (imputed)	N
1400	chr4	106911741	106911742	rs13112725	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	4q24		rs13112725-C	NR	9E-18		0.0181	[0.014-0.022] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1400	chr4	106911741	106911742	rs13112725	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	145,505 East Asian ancestry individuals	NA	4q24		rs13112725-C	0.644787	3E-8		0.0196691	[0.013-0.027] unit increase	Illumina [13477770] (imputed)	N
1400	chr4	106911741	106911742	rs13112725	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	4q24		rs13112725-C	NR	5E-12		0.0142	[0.01-0.018] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
1400	chr4	106911741	106911742	rs13112725	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	4q24		rs13112725-C	NR	2E-14		0.0165	[0.012-0.021] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
1400	chr4	106911741	106911742	rs13112725	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	4q24		rs13112725-C	NR	1E-9		0.0136	[0.0093-0.0179] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1400	chr4	106911741	106911742	rs13112725	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls	NA	4q24	NPNT	rs13112725-G	0.240779	8E-10		0.056514364	[0.038-0.075] unit decrease	Affymetrix [7288503] (imputed)	N
1400	chr4	106911741	106911742	rs13112725	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	4q24	NPNT	rs13112725-G	0.2401	5E-12		0.04879546	[0.035-0.063] unit decrease	Affymetrix [7288503] (imputed)	N
1400	chr4	106911741	106911742	rs13112725	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	4q24	NR	rs13112725-C	0.6421	3E-8	(East Asian)	0.3837	[0.25-0.52] unit increase	Illumina [6200000] (imputed)	N
1400	chr4	106911741	106911742	rs13112725	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Pulse pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 Japanese ancestry individuals	4q24	NPNT	rs13112725-C	0.6421	3E-6	(Japanese)	0.2731	[0.16-0.39] unit increase	Illumina [6200000] (imputed)	N
1400	chr4	106911741	106911742	rs13112725	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Hypertension	22,566 Japanese ancestry cases, 28,226 Japanese ancestry controls	8,809 East Asian ancestry cases, 13,663 East Asian ancestry controls, 105,253 European ancestry individuals	4q24	NPNT	rs13112725-C	0.6421	2E-6	(Japanese)	0.0707	[0.041-0.1] unit increase	Illumina [6200000] (imputed)	N
1400	chr4	106911741	106911742	rs13112725	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Systolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	4q24	NPNT, TBCK	rs13112725-C	0.767	3E-16		0.413	[0.31-0.51] unit increase	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
1400	chr4	106911741	106911742	rs13112725	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Systolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	4q24	NPNT, TBCK	rs13112725-C	0.767	1E-8	(EA, initial)	0.501	[0.33-0.67] unit increase	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
1400	chr4	106911741	106911742	rs13112725	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Systolic blood pressure	140,882 European ancestry individuals	190,318 European ancestry individuals	4q24	NPNT	rs13112725-C	0.76	2E-14		0.435	[0.32-0.55] unit increase	Affymetrix [~ 9800000] (imputed)	N
1400	chr4	106911741	106911742	rs13112725	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	4q24	NPNT, TBCK	rs13112725-G		2E-11		0.297	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1400	chr4	106911741	106911742	rs13112725	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	4q24	NPNT, TBCK	rs13112725-G		4E-6		0.136	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1400	chr4	106911741	106911742	rs13112725	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	4q24	NPNT, TBCK	rs13112725-G		3E-8		0.15	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1400	chr4	106913354	106913355	rs2866784	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	4q24	NR	rs2866784-?	NR	2E-7				Affymetrix [NR]	N
1400	chr4	106934056	106934057	rs143750764	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	4q24	RP11-710F7.3, NPNT, TBCK, INTS12	rs143750764-T	NR	4E-6	(sleep offset)	0.6222	[0.36-0.89] unit decrease	Affymetrix [7141204] (imputed)	N
1401	chr4	107000461	107000462	rs11097912	22837378	Wilk JB	2012-07-26	Am J Respir Crit Care Med	Genome-wide association studies identify CHRNA5/3 and HTR4 in the development of airflow obstruction.	Airflow obstruction	up to 3,368 European ancestry cases, up to 29,507 European ancestry controls	331 European ancestry cases, 2,550 European ancestry controls	4q24	MGC16169	rs11097912-?	0.67	6E-6	(smokers)	1.18		Affymetrix, Illumina [up to 2500000] (imputed)	N
1401	chr4	107031852	107031853	rs72677318	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (processing speed) x major depressive disorder interaction (2df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	4q24		rs72677318-A	0.01	2E-8				NR [NR] (imputed)	N
1401	chr4	107031852	107031853	rs72677318	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (executive function) x major depressive disorder interaction (2df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	4q24		rs72677318-A	0.01	4E-10				NR [NR] (imputed)	N
1402	chr4	107089300	107089301	rs72677343	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	4q24		rs72677343-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1403	chr4	107270026	107270027	rs13534	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	4q24	NR	rs13534-A	0.260484	9E-15		0.0273409	[0.02-0.034] unit decrease	NR [19129689] (imputed)	N
1404	chr4	107370684	107370685	rs2903421	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	4q24		rs2903421-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1405	chr4	107487060	107487061	rs17358000	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	4q24	MGC16169	rs17358000-?	NR	8E-6	(creatinine)	0.32975006	[0.19-0.47] unit increase	Affymetrix [at least 2500000] (imputed)	N
1405	chr4	107511425	107511426	rs147170006	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		4q24	NR	rs147170006-G	NR	1E-10		0.0501186	NR unit increase	NR [NR] (imputed)	N
1405	chr4	107556328	107556329	rs62311678	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	4q24	NR	rs62311678-T	0.0567565	4E-32		0.0811787	[0.068-0.095] unit increase	NR [19129689] (imputed)	N
1405	chr4	107566274	107566275	rs78366551	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	4q24		rs78366551-?	NR	3E-22				NR [~ 8900000] (imputed)	N
1405	chr4	107573740	107573741	rs1425252	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	4q24	NR	rs1425252-A	0.469321	2E-18		0.0282129	[0.022-0.035] unit increase	NR [19129689] (imputed)	N
1406	chr4	107628070	107628071	rs10516537	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		4q25	NR	rs10516537-C	NR	6E-10		0.0541948	NR unit increase	NR [NR] (imputed)	N
1407	chr4	107839113	107839114	rs114497723	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DKK2	5,366 Icelandic ancestry individuals	NA	4q25		rs114497723-G	0.04774	1E-164		0.975733	[0.91-1.05] unit decrease	Illumina [7506463] (imputed)	N
1407	chr4	107861948	107861949	rs145945174	28272467	Heilmann-Heimbach S	2017-03-08	Nat Commun	Meta-analysis identifies novel risk loci and yields systematic insights into the biology of male-pattern baldness.	Male-pattern baldness	10,846 European ancestry cases, 11,672 European ancestry controls	NA	4q25		rs145945174-G	0.07	1E-13		0.3	[0.22-0.38] unit increase	Affymetrix, Illumina [8004650] (imputed)	N
1407	chr4	107864983	107864984	rs77571736	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q25	DKK2	rs77571736-G	0.954375	2E-83	(DKK2, 6546_41_3)	0.9453446	[0.85-1.04] unit increase	Illumina [> 1000000] (imputed)	N
1408	chr4	107883048	107883049	rs78311490	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		4q25	NR	rs78311490-G	NR	5E-6		0.05	NR unit decrease	NR [NR] (imputed)	N
1408	chr4	107883048	107883049	rs78311490	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Male-pattern baldness	9,009 European ancestry cases, 8,491 European ancestry controls	NA	4q25	DKK2	rs78311490-?	NR	7E-10		1.3210039	[1.21-1.45]	Illumina [13436641] (imputed)	N
1408	chr4	107883067	107883068	rs17037148	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	4q25		rs17037148-?	NR	3E-16				NR [~ 8900000] (imputed)	N
1408	chr4	107883067	107883068	rs17037148	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	4q25	NR	rs17037148-T	0.0752452	4E-26		0.0621514	[0.051-0.074] unit decrease	NR [19129689] (imputed)	N
1408	chr4	107888787	107888788	rs4109346	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		4q25	DKK2	rs4109346-A	NR	2E-9		0.05575	NR unit decrease	NR [NR] (imputed)	N
1408	chr4	107903544	107903545	rs2051756	31668963	Bay CP	2019-09-27	J Clin Densitom	Genome-Wide Association Analysis of Longitudinal Bone Mineral Content Data From the Iowa Bone Development Study.	Peak hip bone mineral content	190 women, 174 men	NA	4q25	NR	rs2051756-C	0.19	1E-6	(Female)	3.18	[1.96-4.4] g decrease	Illumina [509842]	N
1409	chr4	108052994	108052995	rs76067940	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	4q25		rs76067940-T	0.04	6E-11		6.54	z score increase	Affymetrix [9061022] (imputed)	N
1409	chr4	108052994	108052995	rs76067940	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	4q25	NR	rs76067940-T	0.0363	2E-8				NR [9056863] (imputed)	N
1409	chr4	108052994	108052995	rs76067940	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	4q25		rs76067940-?	NR	2E-25				NR [~ 8900000] (imputed)	N
1409	chr4	108052994	108052995	rs76067940	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	4q25	NR	rs76067940-T	0.0354681	2E-33		0.102068	[0.085-0.119] unit decrease	NR [19129689] (imputed)	N
1409	chr4	108052994	108052995	rs76067940	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		4q25	NR	rs76067940-T	NR	1E-10		0.107791	NR unit decrease	NR [NR] (imputed)	N
1409	chr4	108064203	108064204	rs55682257	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Large artery stroke	350 Indian ancestry cases, 2,154 Indian ancestry controls	NA	4q25		rs55682257-?	NR	2E-6		1.1477149	[1.08490000470922-1.21416669464976]	Illumina [up to 7827597] (imputed)	N
1409	chr4	108071499	108071500	rs145379440	29703947	Jawinski P	2018-04-27	Mol Psychiatry	Human brain arousal in the resting state: a genome-wide association study.	Resting-state electroencephalogram vigilance	1,877 European ancestry individuals	NA	4q25	DKK2	rs145379440-T	0.981	5E-6	(Slope index)	0.5092	[0.29-0.73] unit increase	Affymetrix [8042262] (imputed)	N
1409	chr4	108079322	108079323	rs78485379	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		DKK2	rs78485379-?	NR	4E-8		0.53	[NR] unit increase	Affymetrix [NR] (imputed)	N
1409	chr4	108110865	108110866	rs116671518	28654678	Mandage R	2017-06-27	PLoS One	Genetic factors affecting EBV copy number in lymphoblastoid cell lines derived from the 1000 Genome Project samples.	Epstein-Barr virus copy number in lymphoblastoid cell lines	389 East Asian ancestry individuals, 189 South Asian ancestry individuals, 492 European ancestry individuals, 467 Sub-Saharan African ancestry individuals, 59 African American individuals, 157 Hispanic/Latino individuals	NA	4q25	DKK2, PAPSS1	rs116671518-?	NR	1E-6	(AA and Sub-Saharan African)			NR [at least 880000]	N
1409	chr4	108115221	108115222	rs10516541	17903307	Wilk JB	2007-09-19	BMC Med Genet	Framingham Heart Study genome-wide association: results for pulmonary function measures.	Mean forced vital capacity from 2 exams	Up to 1,222 individuals	NA	4q25	intergenic	rs10516541-?	NR	4E-6	(meanFVC)			Affymetrix [70897]	N
1411	chr4	108287243	108287244	rs11941798	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,963 Sub-Saharan African ancestry females	NA	4q25		rs11941798-G	0.986639	2E-6		0.0552904	[0.033-0.078] unit decrease	Illumina [13900000] (imputed)	N
1411	chr4	108304198	108304199	rs7680468	24478790	Lee JH	2014-01-17	Front Genet	Genome wide association and linkage analyses identified three loci-4q25, 17q23.2, and 10q11.21-associated with variation in leukocyte telomere length: the Long Life Family Study.	Telomere length	4,829 European ancestry individuals from 586 families with exceptional longevity	NA	4q25	DKK2, PAPSS1	rs7680468-T	0.029	5E-8			[NR]	Illumina [9250000] (imputed)	N
1411	chr4	108309772	108309773	rs1034637	31806883	de Las Fuentes L	2019-12-06	Pharmacogenomics J	Genome-wide meta-analysis of variant-by-diuretic interactions as modulators of lipid traits in persons of European and African ancestry.	LDL cholesterol levels x loop diuretics use interaction	2,117 European ancestry exposed individuals, 30,715 European ancestry unexposed individuals, 784 African American and African ancestry exposed individuals, 5,218 African American and African ancestry unexposed individuals	NA	4q25	U6, PAPSS1	rs1034637-?	NR	8E-7		0.1166	[0.072-0.161] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1411	chr4	108329617	108329618	rs203202	31806883	de Las Fuentes L	2019-12-06	Pharmacogenomics J	Genome-wide meta-analysis of variant-by-diuretic interactions as modulators of lipid traits in persons of European and African ancestry.	LDL cholesterol levels x loop diuretics use interaction	2,117 European ancestry exposed individuals, 30,715 European ancestry unexposed individuals, 784 African American and African ancestry exposed individuals, 5,218 African American and African ancestry unexposed individuals	NA	4q25	U6, PAPSS1	rs203202-?	NR	2E-7	(EA)	0.1231	[0.076-0.17] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1412	chr4	108414389	108414390	rs2189203	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	4q25	NR	rs2189203-A	0.340587	7E-10		0.0202166	[0.014-0.027] unit decrease	NR [19129689] (imputed)	N
1412	chr4	108498839	108498840	rs2726687	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	4q25	SGMS2	rs2726687-?	NR	6E-7	(beta aminoisobutyric acid)	0.20358409	[0.12-0.28] unit increase	Affymetrix [at least 2500000] (imputed)	N
1414	chr4	108754523	108754524	rs143297958	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Fibroblast growth factor basic levels	7,565 Finnish ancestry individuals	NA	4q25	NR	rs143297958-G		2E-6		0.5822	[0.34-0.83] SD units decrease	NR [10700000] (imputed)	N
1414	chr4	108757948	108757949	rs151001187	33531474	Burton CL	2021-02-02	Transl Psychiatry	Genome-wide association study of pediatric obsessive-compulsive traits: shared genetic risk between traits and disorder.	Obsessive-compulsive traits	5,018 European ancestry children and adolescents	NA	4q25	SGMS2	rs151001187-?	NR	9E-6		0.389	[0.22-0.56] unit decrease	Illumina [7870334] (imputed)	N
1414	chr4	108765021	108765022	rs72675567	29532581	Hallfors J	2018-03-13	Addict Biol	Genome-wide association study in Finnish twins highlights the connection between nicotine addiction and neurotrophin signaling pathway.	Nicotine withdrawal symptom count	1,703 Finnish ancestry ever smoker individuals from up to 739 families	NA	4q25	NR	rs72675567-G	0.086	3E-6		0.62	[0.37-0.87] unit decrease	Illumina [9469131] (imputed)	N
1415	chr4	108802380	108802381	rs72888948	30737484	Thomsen H	2019-02-08	Leukemia	Genome-wide association study of monoclonal gammopathy of unknown significance (MGUS): comparison with multiple myeloma.	Monoclonal gammopathy of undetermined significance	992 European ancestry cases, 2,910 European ancestry controls	NA	4q25	SGMS2	rs72888948-T		5E-6		1.48	[1.25-1.76]	Illumina [10258281] (imputed)	N
1415	chr4	108834528	108834529	rs13103176	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q25	NR	rs13103176-T	0.04355	1E-8	(TTN)	0.6836	NR unit increase	Illumina [1671387] (imputed)	N
1415	chr4	108851573	108851574	rs4956029	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	4q25	SGMS2	rs4956029-?	NR	3E-6	(glycine)	0.19575763	[0.11-0.28] unit increase	Affymetrix [at least 2500000] (imputed)	N
1415	chr4	108861081	108861082	rs1493132	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	4q25	CYP2U1	rs1493132-T	0.6614	3E-11		0.0132	[0.0093-0.0171] unit decrease	Affymetrix [18391927] (imputed)	N
1416	chr4	108924556	108924557	rs170240	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	4q25		rs170240-?	NR	5E-12				NR [~ 8900000] (imputed)	N
1416	chr4	108959281	108959282	rs6851442	24529757	Xie T	2014-01-17	Neurobiol Aging	Genome-wide association study combining pathway analysis for typical sporadic amyotrophic lateral sclerosis in Chinese Han populations.	Amyotrophic lateral sclerosis (sporadic)	250 Han Chinese ancestry cases, 250 Han Chinese ancestry controls	NA	4q25	HADH	rs6851442-?		3E-6				Illumina [859311]	N
1416	chr4	109002558	109002559	rs3819199	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls	NA	4q25	LEF1	rs3819199-C	0.429505	5E-8		0.044605073	[0.029-0.061] unit increase	Affymetrix [7288503] (imputed)	N
1416	chr4	109016823	109016824	rs898518	23770605	Berndt SI	2013-06-16	Nat Genet	Genome-wide association study identifies multiple risk loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	2,179 European ancestry cases, 6,221 European ancestry controls	1,709 European ancestry cases, 6,318 European ancestry controls	4q25	LEF1	rs898518-A	0.59	4E-10		1.2	[1.14-1.27]	Illumina [549934]	N
1416	chr4	109020698	109020700	rs67372037	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	4q25	LEF1	rs67372037-A	0.5353	2E-8		0.1883	[0.12-0.25] mmHg decrease	Affymetrix [NR] (imputed)	N
1416	chr4	109020801	109020802	rs116711774	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	4q25	LEF1	rs116711774-?	NR	2E-9		1.3394054	NR	Affymetrix [9154080] (imputed)	N
1416	chr4	109025378	109025379	rs7665304	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	4q25	LEF1	rs7665304-A		5E-6		0.251	unit increase	Affymetrix [at least 2696785] (imputed)	N
1416	chr4	109025378	109025379	rs7665304	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	4q25	LEF1	rs7665304-A		1E-8		0.22	unit increase	Affymetrix [at least 2696785] (imputed)	N
1416	chr4	109025378	109025379	rs7665304	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	4q25	LEF1	rs7665304-A		6E-8		0.128	unit increase	Affymetrix [at least 2696785] (imputed)	N
1416	chr4	109025864	109025865	rs7690934	28165464	Law PJ	2017-02-06	Nat Commun	Genome-wide association analysis implicates dysregulation of immunity genes in chronic lymphocytic leukaemia.	Chronic lymphocytic leukemia	4,478 European ancestry cases and 13,213 European ancestry controls.	1,722 European ancestry cases and 4,385 European ancestry controls.	4q25	LEF1	rs7690934-C	NR	6E-9		1.16	[1.11-1.22]	Affymetrix, Illumina [> 10000000] (imputed)	N
1416	chr4	109026413	109026414	rs2003869	26956414	Berndt SI	2016-03-09	Nat Commun	Meta-analysis of genome-wide association studies discovers multiple loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	3,100 European ancestry cases, 7,667 European ancestry controls	1,958 cases,  5,530 controls	4q25	LEF1	rs2003869-G	0.567	1E-7		1.19	[1.11-1.26]	Affymetrix, Illumina [~ 8500000] (imputed)	N
1416	chr4	109028924	109028925	rs114748567	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Blonde (UKB data field 1747_1)	51,424 European ancestry cases, 403,740 European ancestry controls	NA	4q25		rs114748567-T	0.008496	6E-11		0.25	[0.18-0.32] unit decrease	NR [11842647] (imputed)	N
1416	chr4	109038653	109038654	rs4245930	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	4q25	NR	rs4245930-G	0.367415	2E-8		0.00730443	[0.0047-0.0099] unit increase	Affymetrix [16578495] (imputed)	N
1416	chr4	109038653	109038654	rs4245930	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	4q25	NR	rs4245930-G	0.367501	1E-19		0.0254406	[0.02-0.031] unit increase	Affymetrix [16580851] (imputed)	N
1416	chr4	109046959	109046960	rs956237	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	4q25	NR	rs956237-A	0.32	4E-11		1.107	[1.08-1.14]	Illumina [11270530] (imputed)	N
1416	chr4	109046959	109046960	rs956237	22291604	Okada Y	2012-01-26	PLoS Genet	A genome-wide association study identified AFF1 as a susceptibility locus for systemic lupus eyrthematosus in Japanese.	Systemic lupus erythematosus	891 Japanese ancestry cases, 3,384 Japanese ancestry controls	1,387 Japanese ancestry cases, 28,564 Japanese ancestry controls	4q25	LEF1	rs956237-A	0.33	2E-6		1.18	[1.10-1.26]	Illumina [430797]	N
1417	chr4	109057403	109057404	rs922168	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	4q25	LEF1	rs922168-?	NR	3E-15		1.0737679	NR	Affymetrix [9154080] (imputed)	N
1417	chr4	109058717	109058718	rs9992763	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	4q25	LEF1	rs9992763-G	NR	2E-11		1.0656437	NR	Affymetrix, Illumina [8278136] (imputed)	N
1417	chr4	109061617	109061618	rs58107865	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Rheumatoid arthritis	5,348 East Asian ancestry cases, 173,268 East Asian ancestry controls	NA	4q25		rs58107865-C	0.254039566	4E-8		0.14335981	[0.092-0.195] unit decrease	Illumina [13429970] (imputed)	N
1417	chr4	109067897	109067898	rs7668764	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	4q25		rs7668764-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1417	chr4	109085100	109085101	rs72660443	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	4q25		rs72660443-?	NR	1E-17				NR [~ 8900000] (imputed)	N
1417	chr4	109102004	109102005	rs28686893	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	4q25		rs28686893-?	NR	1E-14				NR [~ 8900000] (imputed)	N
1417	chr4	109111804	109111805	rs57634688	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	4q25	NR	rs57634688-T	0.366	2E-9	(conditional)	1.109	[1.08-1.14]	Illumina [11270530] (imputed)	N
1417	chr4	109171066	109171067	rs1393824	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	4q25		rs1393824-?	NR	3E-9		0.0115372	[0.0074-0.0156] unit increase	Affymetrix [20259828] (imputed)	N
1418	chr4	109217928	109217929	rs13144621	22837378	Wilk JB	2012-07-26	Am J Respir Crit Care Med	Genome-wide association studies identify CHRNA5/3 and HTR4 in the development of airflow obstruction.	Airflow obstruction	up to 3,368 European ancestry cases, up to 29,507 European ancestry controls	331 European ancestry cases, 2,550 European ancestry controls	4q25	LEF1	rs13144621-?	0.68	1E-6	(All)	1.16		Affymetrix, Illumina [up to 2500000] (imputed)	N
1418	chr4	109248361	109248362	rs11097978	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	4q25		rs11097978-?	NR	1E-15				NR [~ 8900000] (imputed)	N
1418	chr4	109271776	109271777	rs917412	29364747	Jonsson L	2018-01-01	J Dent Res	Rare and Common Variants Conferring Risk of Tooth Agenesis.	Tooth agenesis (mandibular second premolars)	1,196 Icelandic ancestry cases, 338,554 Icelandic ancestry controls (includes non-array genotyped, whole-genome imputed individuals)	66 European ancestry cases, 4,667 European ancestry controls, 82 European and other ancestry cases, 2,696 European and other ancestry controls	4q25	LEF1	rs917412-T	0.092	6E-10		1.6	[1.38-1.86]	Illumina [NR] (imputed)	N
1418	chr4	109276829	109276830	rs1558172	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	4q25		rs1558172-?	NR	1E-16				NR [~ 8900000] (imputed)	N
1418	chr4	109294588	109294589	rs7674010	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 20)	3,566 European ancestry individuals	4,680 European ancestry individuals	4q25		rs7674010-T	0.289520426	4E-8				Illumina [7417619] (imputed)	N
1419	chr4	109350879	109350880	rs219493	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Hyperopia	10,828 European ancestry hyperopia cases, 21,416 European ancestry emmetropia controls	NA	4q25	NR	rs219493-?	NR	2E-6		0.109894	[0.065-0.155] unit increase	NR [13958389] (imputed)	N
1419	chr4	109350879	109350880	rs219493	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	4q25		rs219493-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1419	chr4	109350879	109350880	rs219493	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	4q25		rs219493-?	NR	9E-38				NR [~ 8900000] (imputed)	N
1419	chr4	109350879	109350880	rs219493	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	4q25	RPL34	rs219493-?	NR	3E-20		1.1025358	NR	Affymetrix [9154080] (imputed)	N
1419	chr4	109385402	109385403	rs17039065	26528553	Davenport ER	2015-11-03	PLoS One	Genome-Wide Association Studies of the Human Gut Microbiota.	Gut microbiome composition (summer)	91 Hutterite individuals	NA	4q25	NR	rs17039065-?	NR	7E-6	(order_Selenomonadales)	1.056398	[0.62-1.49] unit decrease	Affymetrix [210924]	N
1419	chr4	109408607	109408608	rs1562975	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	4q25	RPL34	rs1562975-A	0.301	6E-15		0.025	[0.019-0.031] unit increase	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
1419	chr4	109416135	109416136	rs75242248	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	4q25		rs75242248-T	0.228474	1E-12		0.0180185	[0.013-0.023] unit decrease	Illumina [13479295] (imputed)	N
1419	chr4	109416135	109416136	rs75242248	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	4q25	LEF1-AS1, RPL34-AS1	rs75242248-?	NR	2E-15		0.028483672	[0.021-0.036] unit decrease	Illumina [27896057] (imputed)	N
1419	chr4	109429478	109429479	rs139788743	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	4q25		rs139788743-C	NR	3E-19		0.0148	[0.012-0.018] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1420	chr4	109456613	109456614	rs56011514	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	4q25	NR	rs56011514-?	NR	3E-11				Affymetrix [~ 8270000] (imputed)	N
1420	chr4	109456613	109456614	rs56011514	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	4q25		rs56011514-?	NR	1E-32				NR [~ 8900000] (imputed)	N
1420	chr4	109477778	109477779	rs7686569	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	4q25	NR	rs7686569-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
1420	chr4	109478107	109478108	rs11731416	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	4q25	RPL34-AS1	rs11731416-C	0.4909	3E-20		1.074	NR	Affymetrix [9154080] (imputed)	N
1420	chr4	109478988	109478989	rs893035	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	4q25		rs893035-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1420	chr4	109482484	109482485	rs1436501	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	4q25		rs1436501-?	NR	5E-23				NR [~ 8900000] (imputed)	N
1420	chr4	109559062	109559063	rs17039171	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	4q25	RPL34	rs17039171-A	0.970981	2E-8		0.0329044	[0.021-0.044] unit increase	Affymetrix [NR] (imputed)	N
1421	chr4	109628024	109628025	rs10029851	24529757	Xie T	2014-01-17	Neurobiol Aging	Genome-wide association study combining pathway analysis for typical sporadic amyotrophic lateral sclerosis in Chinese Han populations.	Amyotrophic lateral sclerosis (sporadic)	250 Han Chinese ancestry cases, 250 Han Chinese ancestry controls	NA	4q25	AGXT2L1	rs10029851-?		1E-7				Illumina [859311]	N
1421	chr4	109641690	109641691	rs2851341	31969989	Oni-Orisan A	2020-01-16	NPJ Genom Med	The impact of adjusting for baseline in pharmacogenomic genome-wide association studies of quantitative change.	Low density lipoprotein cholesterol levels (on statin treatment)	28,616 European ancestry individuals, 1,205 African ancestry individuals, 2,350 East Asian ancestry individuals, 2,703 Hispanic/Latino individuals	NA	4q25	NR	rs2851341-A	0.001	2E-8	(EA)	0.351	[0.23-0.47] unit decrease	Affymetrix [13250765] (imputed)	N
1421	chr4	109693454	109693455	rs7681615	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	4q25	AGXT2L1	rs7681615-T	0.3769	6E-8	(EA)	0.002	[0.0012-0.0028] unit increase	Affymetrix [NR] (imputed)	N
1421	chr4	109693454	109693455	rs7681615	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	4q25	AGXT2L1	rs7681615-T	0.352	5E-9		0.002	[0.0014-0.0026] unit increase	Affymetrix [NR] (imputed)	N
1421	chr4	109693925	109693926	rs7687209	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	4q25	ETNPPL	rs7687209-T	0.4155	1E-15		0.0022	[0.0014-0.003] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
1421	chr4	109703548	109703549	rs55929207	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	4q25		rs55929207-G	NR	2E-15		0.0127	[0.0096-0.0158] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
1421	chr4	109703548	109703549	rs55929207	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	4q25	ETNPPL	rs55929207-C	0.4776	4E-16		0.0019	[0.0013-0.0025] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
1422	chr4	109723125	109723126	rs4956211	21408207	Chung SA	2011-03-03	PLoS Genet	Differential genetic associations for systemic lupus erythematosus based on anti-dsDNA autoantibody production.	Systemic lupus erythematosus	811 anti-dsDNA positive European ancestry cases, 906 anti-dsDNA negative European ancestry cases, 4,813 European ancestry controls	NA	4q25	COL25A1	rs4956211-A	0.35	1E-6	(anti-dsDNA +)	1.33	[1.19-1.48]	Illumina [421318] (imputed)	N
1422	chr4	109740184	109740185	rs57537217	31151762	Gelernter J	2019-04-08	Biol Psychiatry	Genome-wide Association Study of Maximum Habitual Alcohol Intake in >140,000 U.S. European and African American Veterans Yields Novel Risk Loci.	Maximum habitual alcohol consumption	126,936 European ancestry individuals, 17,029 African American individuals	NA	4q25	NR	rs57537217-T	NR	8E-6	(AA)	0.187021	[0.1-0.27] unit increase	Affymetrix [up to 6007810] (imputed)	N
1423	chr4	109880729	109880730	rs17039583	21688384	Wang KS	2011-06-17	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association analysis of age at onset in schizophrenia in a European-American sample.	Schizophrenia (age at onset)	1,162 European ancestry cases	1,068 European ancestry cases	4q25	COL25A1	rs17039583-?	NR	4E-6		2.431	[NR] unit increase	Affymetrix [722112]	N
1423	chr4	109955940	109955941	rs74367352	28282560	Pott J	2017-02-24	Atherosclerosis	Genome-wide meta-analysis identifies novel loci of plaque burden in carotid artery.	Carotid plaque burden	7,189 European ancestry individuals	NA	4q25	COL25A1	rs74367352-G	NR	1E-6		0.16182269	[0.096-0.228] unit increase	Affymetrix [9576485] (imputed)	N
1424	chr4	109979130	109979131	rs3096490	25133637	Scannell Bryan M	2014-08-18	PLoS One	Genome-wide association studies and heritability estimates of body mass index related phenotypes in Bangladeshi adults.	Body mass index	2,763 Bangladeshi ancestry females, 2,591 Bangladeshi ancestry males	NA	4q25	COL25A1	rs3096490-G	0.529	5E-7		0.317	[0.19-0.44] kg/m2 increase	Illumina [1208102] (imputed)	N
1424	chr4	110025605	110025606	rs72670345	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	4q25	NR	rs72670345-T	NR	1E-11		0.0379	[0.027-0.049] unit increase	Affymetrix [9000000] (imputed)	N
1424	chr4	110039767	110039768	rs576447099	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	4q25	COL25A1	rs576447099-A	0.9981	3E-6		0.499	[0.29-0.71] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1424	chr4	110081020	110081021	rs76455782	29206233	Shendre A	2017-12-04	PLoS One	Genome-wide admixture and association study of subclinical atherosclerosis in the Women's Interagency HIV Study (WIHS).	Common carotid intima-media thickness in HIV negative individuals	288 Black non-Hispanic HIV-negative women	NA	4q25	COL25A1	rs76455782-C	NR	9E-7		0.04439	[NR] unit increase	Illumina [1124301]	N
1425	chr4	110170635	110170636	rs9991319	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	4q25	NR	rs9991319-?	NR	4E-6		0.0082749	[0.0048-0.0118] unit decrease	Affymetrix [805426] (imputed)	N
1425	chr4	110172885	110172886	rs144998240	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		4q25	COL25A1	rs144998240-A	0.006	8E-7	(liability model)	0.5	[0.3-0.7] unit increase	NR [19725427] (imputed)	N
1426	chr4	110242895	110242896	rs535305978	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	4q25	NR	rs535305978-C	0.007310999999999956	6E-9		0.0453813	[0.03-0.061] unit increase	Affymetrix [16578495] (imputed)	N
1426	chr4	110266912	110266913	rs187325356	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	4q25	NR	rs187325356-A	0.007533000000000012	8E-21		0.0656046	[0.052-0.079] unit increase	Affymetrix [16582621] (imputed)	N
1426	chr4	110266912	110266913	rs187325356	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	4q25	NR	rs187325356-A	0.007533000000000012	4E-18		0.0648992	[0.051-0.079] unit increase	Affymetrix [16582614] (imputed)	N
1426	chr4	110294465	110294466	rs183256737	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		4q25	Intergenic	rs183256737-A	0.993	2E-6	(liability model)	0.46	[0.26-0.66] unit decrease	NR [19725427] (imputed)	N
1426	chr4	110324273	110324274	rs181961357	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Scarlet fever	6,812 European ancestry cases, 113,837 European ancestry controls	NA	4q25	NR	rs181961357-?	NR	3E-6		1.9707	[0.93-3.01] unit increase	Illumina [at least 560000] (imputed)	N
1427	chr4	110455505	110455506	rs182972826	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		4q25	SEC24B	rs182972826-T	0.007	4E-6	(liability model)	0.44	[0.24-0.64] unit increase	NR [19725427] (imputed)	N
1427	chr4	110465570	110465571	rs182572831	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Scarlet fever	6,812 European ancestry cases, 113,837 European ancestry controls	NA	4q25	NR	rs182572831-?	NR	9E-6		1.4816	[0.7-2.27] unit decrease	Illumina [at least 560000] (imputed)	N
1427	chr4	110487550	110487551	rs143556177	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (hospitalized covid vs population)	613 European ancestry cases, 680,416 European ancestry controls, 140 Hispanic or Latin American cases, 94,327 Hispanic or Latin American controls, 49 Black or African American cases, 22,410 Black or African American controls	NA	4q25		rs143556177-?	NR	9E-6		0.6594786	[0.37-0.95] unit increase	Illumina [9875426] (imputed)	N
1428	chr4	110525038	110525039	rs547113723	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small HDL particles	115,082 European ancestry individuals	NA	4q25		rs547113723-G	0.992056	7E-9		0.138724	[0.092-0.186] unit increase	NR [11722792] (imputed)	N
1428	chr4	110525038	110525039	rs547113723	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small HDL	115,082 European ancestry individuals	NA	4q25		rs547113723-G	0.992056	3E-11		0.159197	[0.11-0.21] unit increase	NR [11722792] (imputed)	N
1428	chr4	110525038	110525039	rs547113723	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small HDL	115,082 European ancestry individuals	NA	4q25		rs547113723-G	0.992056	1E-10		0.153768	[0.11-0.2] unit increase	NR [11722792] (imputed)	N
1428	chr4	110525038	110525039	rs547113723	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	4q25		rs547113723-T	NR	3E-20		0.1229	[0.097-0.149] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
1428	chr4	110569619	110569620	rs78025076	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	4q25	NR	rs78025076-T	NR	1E-9		0.0537	[0.036-0.071] unit decrease	Affymetrix [9000000] (imputed)	N
1428	chr4	110569619	110569620	rs78025076	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	4q25	NR	rs78025076-T	NR	3E-15		0.0701	[0.053-0.088] unit decrease	Affymetrix [9000000] (imputed)	N
1428	chr4	110569619	110569620	rs78025076	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	4q25	CCDC109B	rs78025076-C	0.979709	6E-12		0.0484707	[0.035-0.062] unit decrease	Affymetrix [NR] (imputed)	N
1428	chr4	110569619	110569620	rs78025076	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	4q25	CCDC109B	rs78025076-C	0.979706	3E-13		0.0492833	[0.036-0.063] unit increase	Affymetrix [NR] (imputed)	N
1428	chr4	110569619	110569620	rs78025076	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	4q25	CCDC109B	rs78025076-C	0.979683	3E-20		0.064208	[0.051-0.078] unit increase	Affymetrix [NR] (imputed)	N
1428	chr4	110569867	110569867	rs58722526	32009195	Condreay LD	2020-02-03	Rheumatol Int	Pharmacogenetic investigation of efficacy response to mepolizumab in eosinophilic granulomatosis with polyangiitis.	Average oral glucocorticoid dose in mepolizumab-treated eosinophilic granulomatosis with polyangiitis	61 individuals	NA	4q25	NR	rs58722526-?	NR	6E-6		1.1664	[0.71-1.63] unit decrease	Affymetrix [7154205] (imputed)	N
1428	chr4	110578225	110578226	rs189866430	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	4q25		rs189866430-T	0.993233	3E-14		0.190846	[0.14-0.24] unit decrease	NR [11722792] (imputed)	N
1428	chr4	110578225	110578226	rs189866430	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	4q25		rs189866430-T	0.993233	4E-15		0.199339	[0.15-0.25] unit decrease	NR [11722792] (imputed)	N
1428	chr4	110578225	110578226	rs189866430	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	4q25		rs189866430-T	0.993233	2E-10		0.163353	[0.11-0.21] unit decrease	NR [11722792] (imputed)	N
1428	chr4	110578225	110578226	rs189866430	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	4q25		rs189866430-T	0.993233	5E-11		0.167777	[0.12-0.22] unit decrease	NR [11722792] (imputed)	N
1428	chr4	110578225	110578226	rs189866430	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total concentration of lipoprotein particles	115,082 European ancestry individuals	NA	4q25		rs189866430-T	0.993233	3E-10		0.157645	[0.11-0.21] unit increase	NR [11722792] (imputed)	N
1428	chr4	110578225	110578226	rs189866430	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	4q25		rs189866430-T	0.993229	4E-10		0.15343	[0.11-0.2] unit decrease	NR [11722792] (imputed)	N
1428	chr4	110578225	110578226	rs189866430	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to monounsaturated fatty acids	115,006 European ancestry individuals	NA	4q25		rs189866430-T	0.993229	3E-8		0.140694	[0.091-0.19] unit increase	NR [11722792] (imputed)	N
1428	chr4	110578225	110578226	rs189866430	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of monounsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	4q25		rs189866430-T	0.993229	2E-9		0.153288	[0.1-0.2] unit decrease	NR [11722792] (imputed)	N
1428	chr4	110578225	110578226	rs189866430	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	4q25		rs189866430-T	0.993233	6E-13		0.186142	[0.14-0.24] unit decrease	NR [11722792] (imputed)	N
1428	chr4	110578225	110578226	rs189866430	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	4q25		rs189866430-T	0.993233	4E-20		0.231325	[0.18-0.28] unit decrease	NR [11722792] (imputed)	N
1428	chr4	110578225	110578226	rs189866430	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	4q25		rs189866430-T	0.993232	1E-11		0.174992	[0.12-0.23] unit decrease	NR [11722792] (imputed)	N
1428	chr4	110578225	110578226	rs189866430	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in IDL	115,082 European ancestry individuals	NA	4q25		rs189866430-T	0.993233	7E-13		0.191078	[0.14-0.24] unit decrease	NR [11722792] (imputed)	N
1428	chr4	110578225	110578226	rs189866430	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large VLDL	115,082 European ancestry individuals	NA	4q25		rs189866430-T	0.993233	8E-9		0.147755	[0.098-0.198] unit decrease	NR [11722792] (imputed)	N
1428	chr4	110578225	110578226	rs189866430	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	4q25		rs189866430-T	0.993233	2E-11		0.171572	[0.12-0.22] unit decrease	NR [11722792] (imputed)	N
1428	chr4	110578225	110578226	rs189866430	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	HDL cholesterol levels	115,082 European ancestry individuals	NA	4q25		rs189866430-T	0.993233	2E-11		0.159015	[0.11-0.21] unit increase	NR [11722792] (imputed)	N
1428	chr4	110578225	110578226	rs189866430	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	4q25		rs189866430-T	0.993233	2E-13		0.18852	[0.14-0.24] unit increase	NR [11722792] (imputed)	N
1428	chr4	110578225	110578226	rs189866430	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	4q25		rs189866430-T	0.993233	7E-14		0.189308	[0.14-0.24] unit increase	NR [11722792] (imputed)	N
1428	chr4	110578225	110578226	rs189866430	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	4q25		rs189866430-T	0.993233	2E-10		0.149033	[0.1-0.2] unit increase	NR [11722792] (imputed)	N
1428	chr4	110578225	110578226	rs189866430	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	4q25		rs189866430-T	0.993233	7E-9		0.148653	[0.098-0.199] unit decrease	NR [11722792] (imputed)	N
1428	chr4	110578225	110578226	rs189866430	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	4q25		rs189866430-T	0.993233	2E-8		0.135474	[0.088-0.183] unit increase	NR [11722792] (imputed)	N
1428	chr4	110578225	110578226	rs189866430	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	4q25		rs189866430-T	0.993233	2E-11		0.171641	[0.12-0.22] unit decrease	NR [11722792] (imputed)	N
1428	chr4	110578225	110578226	rs189866430	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of chylomicrons and extremely large VLDL particles	115,082 European ancestry individuals	NA	4q25		rs189866430-T	0.993233	1E-10		0.164183	[0.11-0.21] unit decrease	NR [11722792] (imputed)	N
1428	chr4	110578225	110578226	rs189866430	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of HDL particles	115,082 European ancestry individuals	NA	4q25		rs189866430-T	0.993233	2E-11		0.167348	[0.12-0.22] unit increase	NR [11722792] (imputed)	N
1428	chr4	110578225	110578226	rs189866430	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	4q25		rs189866430-T	0.993231	1E-12		0.187343	[0.14-0.24] unit increase	NR [11722792] (imputed)	N
1428	chr4	110578225	110578226	rs189866430	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	4q25		rs189866430-T	0.993233	4E-10		0.162716	[0.11-0.21] unit increase	NR [11722792] (imputed)	N
1428	chr4	110578225	110578226	rs189866430	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	4q25		rs189866430-T	0.993233	1E-16		0.212267	[0.16-0.26] unit increase	NR [11722792] (imputed)	N
1428	chr4	110578225	110578226	rs189866430	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in IDL	115,082 European ancestry individuals	NA	4q25		rs189866430-T	0.993233	2E-9		0.155671	[0.11-0.21] unit increase	NR [11722792] (imputed)	N
1428	chr4	110578225	110578226	rs189866430	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium HDL	115,082 European ancestry individuals	NA	4q25		rs189866430-T	0.993233	8E-12		0.16759	[0.12-0.22] unit increase	NR [11722792] (imputed)	N
1428	chr4	110578225	110578226	rs189866430	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	4q25		rs189866430-T	0.993233	2E-11		0.172895	[0.12-0.22] unit decrease	NR [11722792] (imputed)	N
1428	chr4	110578225	110578226	rs189866430	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	4q25		rs189866430-T	0.993233	2E-12		0.168064	[0.12-0.21] unit increase	NR [11722792] (imputed)	N
1428	chr4	110578225	110578226	rs189866430	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	4q25		rs189866430-T	0.993233	4E-13		0.1896	[0.14-0.24] unit increase	NR [11722792] (imputed)	N
1428	chr4	110578225	110578226	rs189866430	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	4q25		rs189866430-T	0.993233	2E-18		0.221386	[0.17-0.27] unit increase	NR [11722792] (imputed)	N
1428	chr4	110578225	110578226	rs189866430	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	4q25		rs189866430-T	0.993233	5E-10		0.15993	[0.11-0.21] unit increase	NR [11722792] (imputed)	N
1428	chr4	110578225	110578226	rs189866430	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	4q25		rs189866430-T	0.993233	8E-10		0.158187	[0.11-0.21] unit increase	NR [11722792] (imputed)	N
1428	chr4	110578225	110578226	rs189866430	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	4q25		rs189866430-T	0.993233	3E-11		0.161844	[0.11-0.21] unit increase	NR [11722792] (imputed)	N
1428	chr4	110578225	110578226	rs189866430	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	4q25		rs189866430-T	0.993233	1E-11		0.17409	[0.12-0.22] unit decrease	NR [11722792] (imputed)	N
1428	chr4	110578225	110578226	rs189866430	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein A1 levels	115,082 European ancestry individuals	NA	4q25		rs189866430-T	0.993233	2E-8		0.135942	[0.088-0.184] unit increase	NR [11722792] (imputed)	N
1428	chr4	110578225	110578226	rs189866430	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	4q25		rs189866430-A	NR	5E-22		0.1396	[0.11-0.17] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
1428	chr4	110590478	110590479	rs4698775	23455636	Fritsche LG	2013-03-03	Nat Genet	Seven new loci associated with age-related macular degeneration.	Age-related macular degeneration	6,713 European ancestry cases, 48,402 European ancestry contols, 110 Southern Indian ancestry cases, 119 Southern Indian ancestry controls, 827 Japanese ancestry cases, 3,323 Japanese ancestry controls	9,070 European ancestry cases, 7,683 European ancestry contols, 461 East Asian ancestry cases, 547 East Asian ancestry controls	4q25	CFI	rs4698775-G	0.31	7E-11		1.14	[1.10-1.17]	Affymetrix, Illumina [2442884] (imputed)	N
1428	chr4	110611197	110611198	rs5030594	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	4q25	CASP6	rs5030594-T	0.3336	2E-8		0.015287408	[0.0099-0.0206] unit increase	Affymetrix [~ 11515000] (imputed)	N
1429	chr4	110638763	110638764	rs41278045	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Triglyceride levels	437,532 European ancestry individuals	NA	4q25		rs41278045-?	NR	2E-17		0.197251	[0.15-0.25] unit increase	NR [9800000] (imputed)	N
1429	chr4	110638763	110638764	rs41278045	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Sex hormone-binding globulin levels	397,043 European ancestry individuals	NA	4q25		rs41278045-?	NR	3E-16		0.202416	[0.15-0.25] unit increase	NR [9800000] (imputed)	N
1429	chr4	110638763	110638764	rs41278045	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	HDL cholesterol levels	400,754 European ancestry individuals	NA	4q25		rs41278045-?	NR	2E-17		0.181313	[0.13-0.23] unit decrease	NR [9800000] (imputed)	N
1429	chr4	110638763	110638764	rs41278045	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Apolipoprotein A1 levels	398,508 European ancestry individuals	NA	4q25		rs41278045-?	NR	3E-23		0.232139	[0.18-0.28] unit decrease	NR [9800000] (imputed)	N
1429	chr4	110638763	110638764	rs41278045	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	4q25	NR	rs41278045-G	NR	1E-12		0.2132	[0.15-0.27] unit increase	Affymetrix [9000000] (imputed)	N
1429	chr4	110638763	110638764	rs41278045	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	4q25	NR	rs41278045-G	NR	3E-9		0.1867	[0.13-0.25] unit increase	Affymetrix [9000000] (imputed)	N
1429	chr4	110638763	110638764	rs41278045	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	4q25	NR	rs41278045-G	NR	3E-9		0.1845	[0.12-0.25] unit decrease	Affymetrix [9000000] (imputed)	N
1429	chr4	110638763	110638764	rs41278045	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	4q25	NR	rs41278045-G	NR	9E-13		0.2229	[0.16-0.28] unit decrease	Affymetrix [9000000] (imputed)	N
1429	chr4	110638763	110638764	rs41278045	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	4q25	PLA2G12A	rs41278045-A	0.9987	1E-12		0.2008	[0.15-0.26] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1429	chr4	110638763	110638764	rs41278045	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	4q25	PLA2G12A	rs41278045-A	0.9986	2E-8		0.1564	[0.1-0.21] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1429	chr4	110638809	110638810	rs2285714	20385819	Chen W	2010-04-12	Proc Natl Acad Sci U S A	Genetic variants near TIMP3 and high-density lipoprotein-associated loci influence susceptibility to age-related macular degeneration.	Age-related macular degeneration	2,157 European ancestry cases, 1,150 European ancestry controls	7,892 European ancestry cases, 5,998 European ancestry controls, 678 Japanese ancestry cases, 336 Japanese ancestry controls	4q25	CFI	rs2285714-T	0.395	3E-7		1.31	[1.18-1.45]	Illumina [~ 2500000] (imputed)	N
1429	chr4	110638823	110638824	rs114816312	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	4q25		rs114816312-C	0.992348	1E-8		0.135774	[0.089-0.182] unit decrease	NR [11722792] (imputed)	N
1429	chr4	110638823	110638824	rs114816312	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	4q25		rs114816312-C	0.992388	4E-8		0.127494	[0.082-0.173] unit decrease	NR [11722792] (imputed)	N
1429	chr4	110638823	110638824	rs114816312	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Triglyceride levels	437,532 European ancestry individuals	NA	4q25		rs114816312-?	NR	1E-38		0.145485	[0.12-0.17] unit increase	NR [9800000] (imputed)	N
1429	chr4	110638823	110638824	rs114816312	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Sex hormone-binding globulin levels	397,043 European ancestry individuals	NA	4q25		rs114816312-?	NR	2E-52		0.171122	[0.15-0.19] unit increase	NR [9800000] (imputed)	N
1429	chr4	110638823	110638824	rs114816312	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Lipoprotein (a) levels	348,806 European ancestry individuals	NA	4q25		rs114816312-?	NR	1E-11		0.0618169	[0.037-0.086] unit decrease	NR [9800000] (imputed)	N
1429	chr4	110638823	110638824	rs114816312	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	HDL cholesterol levels	400,754 European ancestry individuals	NA	4q25		rs114816312-?	NR	2E-44		0.158841	[0.14-0.18] unit decrease	NR [9800000] (imputed)	N
1429	chr4	110638823	110638824	rs114816312	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Apolipoprotein A1 levels	398,508 European ancestry individuals	NA	4q25		rs114816312-?	NR	3E-67		0.20303	[0.18-0.23] unit decrease	NR [9800000] (imputed)	N
1429	chr4	110638823	110638824	rs114816312	33730874	Said MA	2021-03-18	Arterioscler Thromb Vasc Biol	Genome-Wide Association Study and Identification of a Protective Missense Variant on Lipoprotein(a) Concentration: Protective Missense Variant on Lipoprotein(a) Concentration.	Lipoprotein (a) levels	348,591 European ancestry individuals, 6,000 African ancestry individuals, 9,116 Asian ancestry individuals, 7,505 individuals		4q25	PLA2G12A	rs114816312-C	NR	1E-11		0.064087	[0.04-0.088] nmol/l increase	NR [19000000] (imputed)	N
1429	chr4	110638823	110638824	rs114816312	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	4q25	PLA2G12A	rs114816312-T	0.00749200000000005	4E-11		0.08593651	[0.06-0.111] unit increase	Affymetrix [93095623] (imputed)	N
1429	chr4	110638823	110638824	rs114816312	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	4q25	NR	rs114816312-T	0.007476999999999956	2E-11		0.119397	[0.085-0.154] unit increase	Affymetrix [16577313] (imputed)	N
1429	chr4	110638823	110638824	rs114816312	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	4q25	NR	rs114816312-T	0.007611000000000034	2E-52		0.0716861	[0.062-0.081] unit increase	Affymetrix [16582909] (imputed)	N
1429	chr4	110638823	110638824	rs114816312	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	4q25	NR	rs114816312-T	0.007750000000000035	1E-34		0.0826054	[0.069-0.096] unit increase	Affymetrix [16585854] (imputed)	N
1429	chr4	110638823	110638824	rs114816312	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	4q25	NR	rs114816312-T	0.007611000000000034	9E-41		0.0716992	[0.061-0.082] unit increase	Affymetrix [16582965] (imputed)	N
1429	chr4	110638823	110638824	rs114816312	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	4q25	NR	rs114816312-T	0.007750000000000035	6E-26		0.0816229	[0.066-0.098] unit increase	Affymetrix [16585866] (imputed)	N
1429	chr4	110656729	110656730	rs7439493	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	4q25	CFI	rs7439493-A	0.416	9E-37	(Complement factor I, CFI.2567.5.6)	0.31	[0.27-0.35] unit increase	Affymetrix [10572788] (imputed)	N
1429	chr4	110656729	110656730	rs7439493	29234017	Carayol J	2017-12-12	Nat Commun	Protein quantitative trait locus study in obesity during weight-loss identifies a leptin regulator.	Protein levels in obesity	494 European ancestry individuals	NA	4q25	NR	rs7439493-?	NR	1E-8	(Factor I)	0.06	[0.04-0.08] unit increase	Illumina [4020654] (imputed)	N
1429	chr4	110656729	110656730	rs7439493	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	4q25	PLA2G12A, CFI	rs7439493-A	0.4021084	2E-17	(EA, Complement factor I)	0.3601	[0.28-0.44] unit increase	Affymetrix [509946]	N
1429	chr4	110659066	110659067	rs10033900	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CFI	5,359 Icelandic ancestry individuals	NA	4q25		rs10033900-C	0.4799	8E-54		0.283381	[0.25-0.32] unit increase	Illumina [7506463] (imputed)	N
1429	chr4	110659066	110659067	rs10033900	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q25	CFI	rs10033900-T	0.52234375	4E-34	(CFI, 2567_5_6)	0.2953883	[0.25-0.34] unit decrease	Illumina [> 1000000] (imputed)	N
1429	chr4	110659066	110659067	rs10033900	26691988	Fritsche LG	2015-12-21	Nat Genet	A large genome-wide association study of age-related macular degeneration highlights contributions of rare and common variants.	Advanced age-related macular degeneration	16,144 European ancestry cases, 17,832 European ancestry controls	473 Asian ancestry cases, 1,099 Asian ancestry controls, 52 African ancestry cases, 361 African ancestry cases, 254 other non-European ancestry cases, 694 other non-European ancestry controls	4q25	CFI	rs10033900-?	NR	5E-17	(EA)	1.15		Illumina [12023830] (imputed)	N
1429	chr4	110659066	110659067	rs10033900	22705344	Sobrin L	2012-06-15	Ophthalmology	Heritability and genome-wide association study to assess genetic differences between advanced age-related macular degeneration subtypes.	Age-related macular degeneration (geographic atrophy)	819 European ancestry geographic atrophy cases, 4,134 European ancestry controls	NA	4q25	CFI	rs10033900-T	.463	4E-6		1.32	[1.17-1.48]	Affymetrix, Illumina [6036699] (imputed)	N
1429	chr4	110659066	110659067	rs10033900	22705344	Sobrin L	2012-06-15	Ophthalmology	Heritability and genome-wide association study to assess genetic differences between advanced age-related macular degeneration subtypes.	Age-related macular degeneration (choroidal neovascularisation)	1,775 European ancestry choroidal neovascularization cases, 4,134 European ancestry controls	4,515 European and unknown ancestry choroidal neovascularization cases, 15,240 European and unknown ancestry controls	4q25	CF1	rs10033900-T	0.463	6E-9		1.31	[1.19-1.44]	Affymetrix, Illumina [6036699] (imputed)	N
1429	chr4	110659066	110659067	rs10033900	21665990	Yu Y	2011-06-10	Hum Mol Genet	Common variants near FRK/COL10A1 and VEGFA are associated with advanced age-related macular degeneration.	Age-related macular degeneration	2,594 European ancestry cases, 4,134 European ancestry controls	5,640 European ancestry cases, 52,174 European ancestry controls	4q25	CFI	rs10033900-T	0.46	4E-10		1.18	[NR]	Affymetrix [6036699] (imputed)	N
1429	chr4	110659066	110659067	rs10033900	20385826	Neale BM	2010-04-12	Proc Natl Acad Sci U S A	Genome-wide association study of advanced age-related macular degeneration identifies a role of the hepatic lipase gene (LIPC).	Age-related macular degeneration	979 cases, 1,709 controls	868 European ancestry cases, 410 European ancestry controls, 4,921 cases, 3,824 controls	4q25	CFI	rs10033900-?	NR	9E-9				Affymetrix [632932]	N
1429	chr4	110685819	110685820	rs141853578	26691988	Fritsche LG	2015-12-21	Nat Genet	A large genome-wide association study of age-related macular degeneration highlights contributions of rare and common variants.	Advanced age-related macular degeneration	16,144 European ancestry cases, 17,832 European ancestry controls	473 Asian ancestry cases, 1,099 Asian ancestry controls, 52 African ancestry cases, 361 African ancestry cases, 254 other non-European ancestry cases, 694 other non-European ancestry controls	4q25	CFI	rs141853578-?	NR	6E-10	(EA)	3.64		Illumina [12023830] (imputed)	N
1429	chr4	110688811	110688812	rs7695246	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	4q25	CFI	rs7695246-C	0.69	5E-6	(AA)	0.033	NR unit decrease	Illumina [NR] (imputed)	N
1429	chr4	110709274	110709275	rs568819524	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Serum alkaline phosphatase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	4q25	CFI	rs568819524-?		1E-8		1.4825	[0.97-1.99] unit increase	Illumina [31500000] (imputed)	N
1429	chr4	110726321	110726322	rs884711	30621171	Coltell O	2019-01-04	Nutrients	Genome-Wide Association Study (GWAS) on Bilirubin Concentrations in Subjects with Metabolic Syndrome: Sex-Specific GWAS Analysis and Gene-Diet Interactions in a Mediterranean Population.	Serum bilirubin levels x sex interaction in metabolic syndrome	188 European ancestry male individuals, 242 European ancestry female individuals	NA	4q25	intergenic	rs884711-?	NR	5E-6				Illumina [622468]	N
1429	chr4	110727559	110727560	rs4698790	24204828	Zheng JS	2013-10-28	PLoS One	Genome-wide contribution of genotype by environment interaction to variation of diabetes-related traits.	Homeostasis model assessment of insulin resistance (dietary factor interaction)	820 European ancestry individuals	NA	4q25	CFI, NOLA1	rs4698790-T	0.279	5E-6	(Protein (control))			Affymetrix [590000]	N
1429	chr4	110727559	110727560	rs4698790	24204828	Zheng JS	2013-10-28	PLoS One	Genome-wide contribution of genotype by environment interaction to variation of diabetes-related traits.	Fasting insulin (dietary factor interaction)	820 European ancestry individuals	NA	4q25	CFI, NOLA1	rs4698790-T	0.279	9E-6	(Protein (control))			Affymetrix [590000]	N
1429	chr4	110750573	110750574	rs34337445	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	4q25		rs34337445-C	NR	3E-8		0.0123	[0.008-0.0166] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1429	chr4	110755320	110755321	rs11937249	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	4q25		rs11937249-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1430	chr4	110757223	110757224	rs61747002	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	4q25	NR	rs61747002-?	NR	3E-9				Illumina [7760689] (imputed)	N
1430	chr4	110800096	110800097	rs6847149	17903301	Vasan RS	2007-09-19	BMC Med Genet	Genome-wide association of echocardiographic dimensions, brachial artery endothelial function and treadmill exercise responses in the Framingham Heart Study.	Exercise treadmill test traits	Up to 1,238 European ancestry individuals	NA	4q25	NOLA1	rs6847149-?	NR	3E-6	(S2EHR)			Affymetrix [70897]	N
1430	chr4	110825633	110825634	rs17316633	19896111	Medland SE	2009-11-04	Am J Hum Genet	Common variants in the trichohyalin gene are associated with straight hair in Europeans.	Hair morphology	4,845 European ancestry individuals from 2,892 families, 16,140 European ancestry individuals	NA	4q25	EGF	rs17316633-A	NR	9E-6				Illumina [~ 1000000] (imputed)	N
1430	chr4	110829457	110829458	rs6855847	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	4q25		rs6855847-A	NR	2E-17		0.0179	[0.014-0.022] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
1430	chr4	110834109	110834110	rs4444903	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Spleen volume	32,860 European ancestry individuals	NA	4q25	EGF	rs4444903-?	NR	4E-14		0.0533	NR L increase	Affymetrix [9390170] (imputed)	N
1430	chr4	110836047	110836048	rs881878	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	4q25	EGF	rs881878-A	0.342906	6E-20		0.021283558	[0.017-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1430	chr4	110836047	110836048	rs881878	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	4q25	NR	rs881878-A	0.342713	1E-25		0.020895	[0.017-0.025] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1430	chr4	110842883	110842884	rs2024114	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	4q25		rs2024114-C	NR	2E-9		0.0145	[0.0098-0.0192] unit increase	Affymetrix, Illumina [20535842] (imputed)	N
1430	chr4	110843139	110843140	rs62327604	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	4q25		rs62327604-C	NR	3E-13		0.0153	[0.011-0.019] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
1430	chr4	110843139	110843140	rs62327604	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	4q25		rs62327604-C	NR	5E-12		0.0145	[0.01-0.019] unit increase	Affymetrix, Illumina [20536605] (imputed)	N
1430	chr4	110843139	110843140	rs62327604	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	4q25		rs62327604-C	NR	1E-18		0.0195	[0.015-0.024] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
1430	chr4	110843139	110843140	rs62327604	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q25	NR	rs62327604-C	0.342702	6E-25				Affymetrix, Illumina [23472807] (imputed)	N
1430	chr4	110845762	110845763	rs12506702	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein EGF	5,365 Icelandic ancestry individuals	NA	4q25		rs12506702-G	0.3781	3E-105		0.406788	[0.37-0.44] unit increase	Illumina [7506463] (imputed)	N
1430	chr4	110852458	110852459	rs3775967	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	4q25	NR	rs3775967-G	0.345796	3E-11		0.012866	[0.0091-0.0167] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1430	chr4	110853776	110853777	rs28629923	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	4q25		rs28629923-?	NR	4E-11				NR [~ 8900000] (imputed)	N
1430	chr4	110854430	110854431	rs3796948	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q25	NR	rs3796948-A	0.469824	1E-17				Affymetrix, Illumina [24246363] (imputed)	N
1430	chr4	110854430	110854431	rs3796948	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	4q25	NR	rs3796948-A	0.406096	9E-14		0.013813	[0.01-0.017] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1430	chr4	110858515	110858517	rs377602035	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	4q25	EGF	rs377602035-C	0.391305	1E-11		0.0154188415	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1430	chr4	110858515	110858517	rs377602035	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	4q25	EGF	rs377602035-C	0.3911	8E-19		0.03342724	[0.026-0.041] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1430	chr4	110858515	110858517	rs377602035	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	4q25	EGF	rs377602035-C	0.3911	3E-16		0.03071381	[0.023-0.038] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1430	chr4	110865464	110865465	rs11568904	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	4q25	EGF	rs11568904-G	0.409487	4E-17		0.019293142	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1430	chr4	110865464	110865465	rs11568904	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	4q25	EGF	rs11568904-G	0.409488	3E-18		0.020028742	[0.016-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1430	chr4	110865464	110865465	rs11568904	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	4q25	EGF	rs11568904-G	0.409434	2E-12		0.01604689	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1430	chr4	110865464	110865465	rs11568904	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	4q25	EGF	rs11568904-G	0.409449	2E-13		0.016774671	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1430	chr4	110865467	110865468	rs11568905	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q25	NR	rs11568905-G	0.389717	6E-14				Affymetrix, Illumina [21126107] (imputed)	N
1430	chr4	110865467	110865468	rs11568905	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	4q25	NR	rs11568905-G	0.350571	5E-15		0.017258	[0.013-0.022] SD unit increase	Affymetrix, Illumina [50282193] (imputed)	N
1430	chr4	110868335	110868335	rs11433359	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	4q25	EGF	rs11433359-GA	0.404681	9E-33		0.027269183	[0.023-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
1430	chr4	110873925	110873926	rs3796944	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	4q25	NR	rs3796944-C	0.406319	3E-43		0.02579	[0.022-0.029] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1430	chr4	110880363	110880364	rs2067004	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q25	NR	rs2067004-C	0.372253	4E-20				Affymetrix, Illumina [23467995] (imputed)	N
1430	chr4	110881493	110881494	rs2237045	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Epidermal growth factor levels	21,758 European ancestry individuals	9,173 individuals	4q25		rs2237045-A	0.67	1E-21		0.134	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1430	chr4	110886342	110886343	rs1860129	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q25	EGF	rs1860129-C	0.376875	5E-62	(EGF, 5509_7_3)	0.41033477	[0.36-0.46] unit increase	Illumina [> 1000000] (imputed)	N
1431	chr4	110887988	110887989	rs6533483	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	4q25	EGF	rs6533483-A	0.402788	2E-36		0.029119415	[0.025-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
1431	chr4	110887988	110887989	rs6533483	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	4q25	EGF	rs6533483-A	0.402812	3E-27		0.024972992	[0.02-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
1431	chr4	110887988	110887989	rs6533483	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	4q25	EGF	rs6533483-A	0.402957	2E-18		0.019961474	[0.016-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1431	chr4	110887988	110887989	rs6533483	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	4q25	NR	rs6533483-A	0.403454	9E-22		0.018352	[0.015-0.022] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1431	chr4	110889006	110889007	rs11568972	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	4q25	EGF	rs11568972-C	0.337	3E-25	(Epidermal growth factor, EGF.5509.7.3)	0.27	[0.21-0.33] unit increase	Affymetrix [10572788] (imputed)	N
1431	chr4	110891672	110891673	rs2298989	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	4q25	EGF	rs2298989-C	0.424838	1E-18		0.02027158	[0.016-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1431	chr4	110894448	110894449	rs17253063	35264221	Caron B	2022-03-09	Genome Med	Integrative genetic and immune cell analysis of plasma proteins in healthy donors identifies novel associations involving primary immune deficiency genes.	EGF plasma levels	400 French ancestry individuals	NA	4q25		rs17253063-A	NR	5E-8		0.14	[0.089-0.191] pg/mL increase	Illumina [5201092] (imputed)	N
1431	chr4	110895112	110895113	rs2298993	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	4q25		rs2298993-G	0.597	4E-18				Affymetrix [10369434] (imputed)	N
1431	chr4	110897584	110897585	rs11568995	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	4q25	NR	rs11568995-G	0.9884981	5E-6	(IGP9)	1.6228	[0.93-2.32] unit decrease	Illumina [~ 2500000] (imputed)	N
1431	chr4	110897584	110897585	rs11568995	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	4q25	NR	rs11568995-G	0.9884981	4E-7	(IGP49)	1.802	[1.11-2.5] unit decrease	Illumina [~ 2500000] (imputed)	N
1431	chr4	110897584	110897585	rs11568995	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	4q25	NR	rs11568995-G	0.9883953	1E-6	(IGP68)	1.7191	[1.02-2.41] unit decrease	Illumina [~ 2500000] (imputed)	N
1431	chr4	110898814	110898815	rs887027	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular volume	108,256 Japanese ancestry individuals	NA	4q25	EGF	rs887027-?	NR	7E-10		0.03206	[0.022-0.042] unit decrease novel	Illumina [6108953] (imputed)	N
1431	chr4	110901146	110901147	rs2302135	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	4q25		rs2302135-G	0.215241	2E-11		0.0294305	[0.021-0.038] unit decrease	Illumina [13476266] (imputed)	N
1431	chr4	110901146	110901147	rs2302135	33545615	Hsu LA	2021-01-19	Atherosclerosis	Circulating chemerin levels are determined through circulating platelet counts in nondiabetic Taiwanese people: A bidirectional Mendelian randomization study.	Platelet count	17,037 Han Chinese ancestry individuals	NA	4q25	EGF	rs2302135-?	NR	3E-9		4.572	[3.24-5.90] unit decrease (adjusted)	Affymetrix [603527]	N
1431	chr4	110905975	110905976	rs2298995	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Non-albumin protein levels	98,538 Japanese ancestry individuals	NA	4q25	EGF	rs2298995-?	NR	2E-10		0.03484	[0.024-0.046] unit decrease novel	Illumina [6108953] (imputed)	N
1431	chr4	110911566	110911567	rs7692976	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	4q25	EGF	rs7692976-G	0.405448	3E-9		0.0135967955	[0.0091-0.0181] unit decrease	Affymetrix [93095623] (imputed)	N
1431	chr4	110911566	110911567	rs7692976	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	4q25	EGF	rs7692976-G	0.4041	5E-10		0.02296516	[0.016-0.03] unit increase	Affymetrix [~ 2500000] (imputed)	N
1431	chr4	110911566	110911567	rs7692976	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	4q25	EGF	rs7692976-G	0.4041	3E-10		0.02319877	[0.016-0.03] unit increase	Affymetrix [~ 2500000] (imputed)	N
1431	chr4	110917625	110917626	rs2299002	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	154,355 East Asian ancestry individuals	NA	4q25		rs2299002-C	0.212938	1E-10		0.0267013	[0.019-0.035] unit decrease	Illumina [13479091] (imputed)	N
1431	chr4	110917625	110917626	rs2299002	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	33,307 East Asian ancestry individuals	NA	4q25	EGF	rs2299002-A	0.7429	1E-12		0.0217	[0.016-0.028] unit increase	Affymetrix, Illumina [15728197] (imputed)	N
1431	chr4	110924359	110924360	rs11569103	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	95,717 East Asian ancestry individuals	NA	4q25		rs11569103-T	0.211075	3E-9		0.032182	[0.022-0.043] unit decrease	Illumina [13471431] (imputed)	N
1431	chr4	110924359	110924360	rs11569103	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Albumin-globulin ratio	98,626 Japanese ancestry individuals	NA	4q25	EGF	rs11569103-?	NR	2E-11		0.03702	[0.026-0.048] unit increase novel	Illumina [6108953] (imputed)	N
1431	chr4	110931938	110931939	rs11569142	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Platelet count	108,208 Japanese ancestry individuals	NA	4q25	EGF	rs11569142-?	NR	2E-28		0.05721	[0.047-0.067] unit decrease novel	Illumina [6108953] (imputed)	N
1431	chr4	110933875	110933876	rs537226223	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	4q25	EGF	rs537226223-A	0.00190900000000005	4E-10		0.16681647	[0.11-0.22] unit increase	Affymetrix [93095623] (imputed)	N
1431	chr4	110941801	110941802	rs11098063	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	4q25		rs11098063-T	0.21275	1E-43		0.056034	[0.048-0.064] unit decrease	Illumina [13478928] (imputed)	N
1431	chr4	110941801	110941802	rs11098063	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	151,807 East Asian ancestry individuals	NA	4q25	NR	rs11098063-C	0.783496	6E-11		0.028986	[0.02-0.038] SD units increase	Affymetrix, Illumina [16710636] (imputed)	N
1431	chr4	110941801	110941802	rs11098063	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	88,929 East Asian ancestry individuals	NA	4q25	NR	rs11098063-C	0.786274	3E-10		0.036548	[0.025-0.048] SD units increase	Affymetrix, Illumina [16289044] (imputed)	N
1431	chr4	110942276	110942277	rs7699288	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	4q25		rs7699288-C	NR	3E-13		0.0152	[0.011-0.019] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1431	chr4	110942276	110942277	rs7699288	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q25	NR	rs7699288-C	0.319837	2E-63				Affymetrix, Illumina [24588908] (imputed)	N
1431	chr4	110943519	110943520	rs540045992	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-to-hip ratio adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,049 whole genome sequenced individuals, 29,518 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,001 Mylopotamos (founder/genetic isolate) individuals, 867 Pomak (founder/genetic isolate) individuals	206,045 European ancestry individuals	4q25	EGF	rs540045992-T	0.0013	1E-6		0.8819	[0.53-1.24] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1431	chr4	110945255	110945256	rs17041245	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	4q25		rs17041245-T	NR	2E-18		0.0193	[0.015-0.024] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
1431	chr4	110945965	110945966	rs720419	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	4q25		rs720419-T	NR	1E-52		0.0311	[0.027-0.035] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1431	chr4	110945965	110945966	rs720419	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q25	NR	rs720419-T	0.318841	9E-13				Affymetrix, Illumina [24649327] (imputed)	N
1431	chr4	110956331	110956332	rs79375912	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	95,119 East Asian ancestry individuals	NA	4q25		rs79375912-G	0.211762	5E-10		0.0338075	[0.023-0.044] unit decrease	Illumina [13471440] (imputed)	N
1431	chr4	110956331	110956332	rs79375912	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	145,648 East Asian ancestry individuals	NA	4q25	NR	rs79375912-A	0.781596	2E-40		0.061212	[0.052-0.07] SD units increase	Affymetrix, Illumina [16710488] (imputed)	N
1431	chr4	110964361	110964362	rs10012953	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	4q25	ELOVL6	rs10012953-G	0.164	3E-6	(Adiponectin )	0.03	[NR] ng/mL increase	Illumina [899892]	N
1431	chr4	110982271	110982272	rs17041322	30718454	Arnau-Soler A	2019-02-04	Transl Psychiatry	Genome-wide by environment interaction studies of depressive symptoms and psychosocial stress in UK Biobank and Generation Scotland.	Depressive symptoms x dependent stressful life events interaction (1df test)	4,919 European ancestry individuals	NA	4q25	ELOVL6	rs17041322-A	0.01534	8E-6		0.190737	NR unit increase	Illumina [560351]	N
1431	chr4	111000602	111000603	rs62325303	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD45 on CD33dim HLA DR-	1,559 Sardinian (founder/genetic isolate) ancestry individuals	NA	4q25		rs62325303-T	0.03973	5E-8		0.5164	[0.33-0.7] unit decrease	Illumina [16943254] (imputed)	N
1432	chr4	111026926	111026927	rs10011926	20732626	Mick E	2010-05-14	J Am Acad Child Adolesc Psychiatry	Family-based genome-wide association scan of attention-deficit/hyperactivity disorder.	Attention deficit hyperactivity disorder	735 trios from 732 families	NA	4q25	ELOVL6	rs10011926-?	0.78	8E-6		1.49	[NR]	Illumina [835136]	N
1432	chr4	111058707	111058708	rs113230679	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Monocyte chemoattractant protein-3 levels	843 Finnish ancestry individuals	NA	4q25	NR	rs113230679-GT		2E-6		0.6182	[0.36-0.87] SD units increase	NR [10700000] (imputed)	N
1432	chr4	111101546	111101546	rs36067435	30988330	Hellwege JN	2019-04-15	Sci Rep	Heritability and genome-wide association study of benign prostatic hyperplasia (BPH) in the eMERGE network.	Benign prostatic hyperplasia	2,258 European ancestry cases, 398 African and unknown ancestry cases, 6,599 European ancestry controls, 1,164 African and unknown ancestry controls	NA	4q25	ELOVL6	rs36067435-?	0.35	1E-6		1.2048193	[1.1-1.33]	Affymetrix, Illumina [10973920] (imputed)	N
1432	chr4	111112067	111112068	rs10019351	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	4q25		rs10019351-G	NR	8E-16		0.0172	[0.013-0.021] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
1432	chr4	111112609	111112610	rs7695508	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	4q25	NR	rs7695508-G	NR	8E-17		0.021	[0.016-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
1432	chr4	111120165	111120166	rs3813829	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	4q25	ELOVL6	rs3813829-A	0.678019	4E-23		0.00238308	[0.0019-0.0029] unit increase	Affymetrix [13995440] (imputed)	N
1432	chr4	111128586	111128587	rs5022521	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	4q25	ELOVL6, ENPEP	rs5022521-C	0.14	3E-11		6.64	z-score increase	Affymetrix [4311822] (imputed)	N
1432	chr4	111133367	111133368	rs7670514	31260374	Pedergnana V	2019-07-01	J Interferon Cytokine Res	Impact of IFNL4 Genetic Variants on Sustained Virologic Response and Viremia in Hepatitis C Virus Genotype 3 Patients.	Response to direct-acting antiviral treatment in hepatitis C virus genotype 3	325 European, Asian and unknown ancestry responders, 84 European, Asian and unknown ancestry non-responders	NA	4q25	NR	rs7670514-?	NR	2E-6		2.4	NR	Affymetrix [~ 18000000] (imputed)	N
1433	chr4	111227815	111227816	rs13148252	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	4q25	NR	rs13148252-G	0.745779246105919	6E-6	(IGP8)	0.171	[0.097-0.245] unit decrease	Illumina [~ 2500000] (imputed)	N
1433	chr4	111229520	111229521	rs244040	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in dyslipidemia	295 Korean ancestry cases, 20,474 Korean ancestry controls	NA	4q25		rs244040-A	0.1415	2E-6		1.639	[1.339-2.006]	Affymetrix [7975321] (imputed)	N
1433	chr4	111255916	111255917	rs244017	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	4q25	PITX2	rs244017-T	0.776	8E-11		1.06	[1.04-1.08]	Illumina [34740186] (imputed)	N
1433	chr4	111262041	111262042	rs4555715	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Pursuit maintenance gain	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	4q25	ENPEP	rs4555715-A	0.07516	3E-6	(African)			Illumina [4404269] (imputed)	N
1434	chr4	111282415	111282416	rs10488889	30145303	Kimbrel NA	2018-07-17	Psychiatry Res	A genome-wide association study of suicide attempts and suicidal ideation in U.S. military veterans.	Suicide attempts	52 European ancestry cases, 70 cases, 680 European ancestry controls, 767 controls	NA	4q25	Intergenic	rs10488889-A	NR	4E-6		3.47		Illumina [2711511] (imputed)	N
1434	chr4	111283707	111283708	rs10488888	30145303	Kimbrel NA	2018-07-17	Psychiatry Res	A genome-wide association study of suicide attempts and suicidal ideation in U.S. military veterans.	Suicide attempts	52 European ancestry cases, 70 cases, 680 European ancestry controls, 767 controls	NA	4q25	Intergenic	rs10488888-C	NR	4E-6		3.47		Illumina [2711511] (imputed)	N
1434	chr4	111300361	111300362	rs243946	29109912	Rawofi L	2017-11-02	PeerJ	Genome-wide association study of pigmentary traits (skin and iris color) in individuals of East Asian ancestry.	Iris heterochromicity	377 East Asian ancestry individuals	NA	4q25	ENPEP	rs243946-T	0.480921	8E-6		0.339	[0.19-0.49] unit decrease	Illumina [at least 520076] (imputed)	N
1434	chr4	111331089	111331090	rs10033366	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Hypertension	22,566 Japanese ancestry cases, 28,226 Japanese ancestry controls	8,809 East Asian ancestry cases, 13,663 East Asian ancestry controls, 105,253 European ancestry individuals	4q25	NR	rs10033366-T	0.2169	3E-8	(East Asian)	0.0903	[0.059-0.122] unit increase	Illumina [6200000] (imputed)	N
1434	chr4	111334729	111334730	rs2087160	21886157	Suhre K	2011-08-31	Nature	Human metabolic individuality in biomedical and pharmaceutical research.	Metabolic traits	2,820 European ancestry individuals	NA	4q25	ENPEP	rs2087160-G	0.207	7E-13	(SM-12 + 1 other trait)	0.124	[NR] unit decrease	Affymetrix, Illumina [534665]	N
1434	chr4	111335721	111335722	rs1879057	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	4q25	ELOVL6, ENPEP	rs1879057-C	0.26108	5E-13	(aspartate)	0.18	[0.13-0.23] unit decrease	Illumina [13039987] (imputed)	N
1434	chr4	111337477	111337478	rs6815273	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	4q25		rs6815273-A	NR	2E-12		0.0136	[0.0099-0.0173] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1434	chr4	111337477	111337478	rs6815273	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	4q25	ENPEP	rs6815273-A	0.3927	6E-18		0.3283	[0.25-0.4] mmHg decrease	Affymetrix [NR] (imputed)	N
1434	chr4	111337863	111337864	rs6533515	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	4q25		rs6533515-?	NR	2E-16				NR [~ 8900000] (imputed)	N
1434	chr4	111341865	111341866	rs139051778	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	4q25	ENPEP	rs139051778-G	0.0119741	4E-9		0.16301987	[0.11-0.22] unit increase	Affymetrix [7288503] (imputed)	N
1434	chr4	111343262	111343263	rs2881854	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	4q25	NR	rs2881854-A	0.6006	7E-9	(East Asian)	0.2727	[0.18-0.36] unit decrease	Illumina [6200000] (imputed)	N
1434	chr4	111343262	111343263	rs2881854	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	4q25	NR	rs2881854-A	0.6006	7E-9	(East Asian)	0.2442	[0.16-0.33] unit decrease	Illumina [6200000] (imputed)	N
1434	chr4	111351223	111351224	rs2348206	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	4q25		rs2348206-A	NR	1E-15		0.0188	[0.014-0.023] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
1434	chr4	111351223	111351224	rs2348206	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	4q25		rs2348206-A	NR	1E-12		0.0172	[0.012-0.022] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1434	chr4	111351223	111351224	rs2348206	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	4q25	ELOVL6, ENPEP	rs2348206-G	0.179616	8E-11	(DSGEGDFXAEGGGVR*)	0.186	[0.13-0.24] unit increase	Illumina [13039987] (imputed)	N
1434	chr4	111360688	111360689	rs4834497	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	4q25	NR	rs4834497-T	0.5853	2E-8	(East Asian)	0.3714	[0.24-0.5] unit decrease	Illumina [6200000] (imputed)	N
1434	chr4	111378361	111378362	rs1996603	29109912	Rawofi L	2017-11-02	PeerJ	Genome-wide association study of pigmentary traits (skin and iris color) in individuals of East Asian ancestry.	Iris color (b* coordinate)	377 East Asian ancestry individuals	NA	4q25	ENPEP	rs1996603-A	0.779	2E-6		0.450736	[0.27-0.63] unit increase	Illumina [at least 520076] (imputed)	N
1434	chr4	111381637	111381638	rs6825911	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	4q25	ENPEP	rs6825911-T	0.47	3E-6	(Japanese)	0.3608	[0.21-0.51] unit decrease	Illumina [6200000] (imputed)	N
1434	chr4	111381637	111381638	rs6825911	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	4q25	ENPEP	rs6825911-T	0.4718	2E-6	(Japanese)	0.26	[0.15-0.37] unit decrease	Illumina [6200000] (imputed)	N
1434	chr4	111381637	111381638	rs6825911	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Hypertension	22,566 Japanese ancestry cases, 28,226 Japanese ancestry controls	8,809 East Asian ancestry cases, 13,663 East Asian ancestry controls, 105,253 European ancestry individuals	4q25	ENPEP	rs6825911-T	0.4718	5E-6	(Japanese)	0.0633	[0.036-0.091] unit decrease	Illumina [6200000] (imputed)	N
1434	chr4	111381637	111381638	rs6825911	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Mean arterial pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	NA	4q25	intergenic	rs6825911-C	0.262036473580063	3E-6		0.25042096	[0.14-0.36] unit increase	Illumina [247039]	N
1434	chr4	111381637	111381638	rs6825911	21572416	Kato N	2011-05-15	Nat Genet	Meta-analysis of genome-wide association studies identifies common variants associated with blood pressure variation in east Asians.	Blood pressure	19,608 East Asian ancestry individuals	30,765 East Asian ancestry individuals	4q25	ENPEP	rs6825911-C	0.51	9E-9	(Diastolic)	0.39	[0.25-0.53] mm Hg increase	Affymetrix, Illumina [1700000] (imputed)	N
1434	chr4	111381637	111381638	rs6825911	21572416	Kato N	2011-05-15	Nat Genet	Meta-analysis of genome-wide association studies identifies common variants associated with blood pressure variation in east Asians.	Blood pressure	19,608 East Asian ancestry individuals	30,765 East Asian ancestry individuals	4q25	ENPEP	rs6825911-C	0.51	7E-8	(Systolic)	0.6	[0.38-0.82] mm Hg increase	Affymetrix, Illumina [1700000] (imputed)	N
1434	chr4	111386197	111386198	rs6848906	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls, 49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	4q25		rs6848906-C	NR	8E-14		0.0504	[0.037-0.064] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1434	chr4	111386197	111386198	rs6848906	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	4q25	intergenic	rs6848906-T	0.1864	1E-8		0.1817	[0.12-0.24] mmHg increase	Affymetrix [NR] (imputed)	N
1434	chr4	111386426	111386427	rs6823889	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls, 22,356 East Asian ancestry cases, 156,370 East Asian ancestry controls	NA	4q25		rs6823889-A	NR	4E-10		0.0481	[0.033-0.063] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1434	chr4	111389100	111389101	rs7685862	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls	NA	4q25	ENPEP	rs7685862-C	0.203951	6E-12		0.06873241	[0.049-0.088] unit increase	Affymetrix [7288503] (imputed)	N
1434	chr4	111389100	111389101	rs7685862	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	4q25		rs7685862-?	NR	7E-13				NR [~ 8900000] (imputed)	N
1434	chr4	111399597	111399598	rs55821297	29109912	Rawofi L	2017-11-02	PeerJ	Genome-wide association study of pigmentary traits (skin and iris color) in individuals of East Asian ancestry.	Iris color (a* coordinate)	377 East Asian ancestry individuals	NA	4q25	ENPEP	rs55821297-G	0.770687	4E-6		0.435	[0.25-0.62] unit increase	Illumina [at least 520076] (imputed)	N
1434	chr4	111406495	111406496	rs13118687	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	4q25		rs13118687-A	NR	4E-13		0.0358	[0.026-0.045] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1434	chr4	111406495	111406496	rs13118687	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	4q25	ENPEP	rs13118687-A	0.470423	2E-12		0.042658705	[0.031-0.055] unit decrease	Affymetrix [7288503] (imputed)	N
1434	chr4	111406818	111406819	rs192667187	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Atrial fibrillation and flutter (PheCode 427.2)	8,404 European ancestry cases, 447,944 European ancestry controls	NA	4q25		rs192667187-C	0.008947	2E-9		0.52	[0.35-0.69] unit increase	NR [11842647] (imputed)	N
1435	chr4	111413064	111413065	rs192833524	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Atrial fibrillation and flutter (PheCode 427.2)	8,404 European ancestry cases, 447,944 European ancestry controls	NA	4q25		rs192833524-T	0.009705	9E-10		0.52	[0.35-0.69] unit increase	NR [11842647] (imputed)	N
1435	chr4	111425894	111425895	rs13134008	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls	NA	4q25	ENPEP	rs13134008-G	0.425252	9E-9		0.045851182	[0.03-0.061] unit decrease	Affymetrix [7288503] (imputed)	N
1435	chr4	111431443	111431444	rs33966350	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls	NA	4q25	ENPEP	rs33966350-A	0.012401	5E-10		0.2244912	[0.15-0.3] unit increase	Affymetrix [7288503] (imputed)	N
1435	chr4	111431443	111431444	rs33966350	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Systolic blood pressure	140,882 European ancestry individuals	190,318 European ancestry individuals	4q25	ENPEP	rs33966350-A	0.01	2E-11		1.661	[1.17-2.15] unit increase	Affymetrix [~ 9800000] (imputed)	N
1435	chr4	111511086	111511087	rs190797076	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	4q25	ENPEP, PITX2	rs190797076-G	0.0041	9E-7	(EA)	0.6743	[0.41-0.94] unit increase	Illumina [~ 9000000] (imputed)	N
1435	chr4	111511086	111511087	rs190797076	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	4q25	ENPEP, PITX2	rs190797076-G	0.0041	4E-6		0.6349	[0.37-0.9] unit increase	Illumina [~ 9000000] (imputed)	N
1435	chr4	111513720	111513721	rs11941078	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	4q25	ENPEP, PITX2	rs11941078-C	0.145914083	2E-6		1.1084317	[1.061939155-1.15695976]	Illumina [10439017] (imputed)	N
1435	chr4	111524628	111524629	rs61501369	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	4q25	PITX2	rs61501369-T	0.234	1E-28		1.1	[1.09-1.12]	Illumina [34740186] (imputed)	N
1436	chr4	111553132	111553133	rs2595104	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	4q25	PITX2	rs2595104-T	0.31	5E-88	(EA)	1.18		Affymetrix, Illumina [up to 12149979] (imputed)	N
1436	chr4	111570222	111570223	rs1448818	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	4q25	NR	rs1448818-?	NR	1E-6		0.0084108	[0.005-0.0118] unit decrease	Affymetrix [805426] (imputed)	N
1436	chr4	111581627	111581628	rs200351414	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	4q25	NR	rs200351414-A	0.698344	5E-10		0.0457117	[0.031-0.06] unit decrease	Affymetrix [17914406] (imputed)	N
1436	chr4	111584965	111584968	rs572585036	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Arrhythmia	17,861 Japanese ancestry cases, 194,592 Japanese ancestry controls	NA	4q25		rs572585036-C	NR	7E-54		0.83589745	[0.817107105956119-0.855119916341506]	Illumina [8919992] (imputed)	N
1436	chr4	111596359	111596360	rs6850025	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	4q25	PITX2	rs6850025-A	0.049	9E-11		1.12	[1.08-1.16]	Illumina [34740186] (imputed)	N
1436	chr4	111629038	111629039	rs16997168	33990960	Hong M	2021-05-14	Eur J Clin Invest	Ethnic similarities in genetic polymorphisms associated with atrial fibrillation: Far East Asian vs European populations.	Atrial fibrillation	9,118 East Asian ancestry cases, 33,467 East Asian ancestry controls	NA	4q25	PITX2	rs16997168-T	NR	1E-48		1.39	[1.33-1.45]	NR [2286360] (imputed)	N
1436	chr4	111643732	111643733	rs113639794	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q25	NR	rs113639794-A	0.0122	2E-9	(PON1)	0.1417	NR unit increase	Illumina [1671387] (imputed)	N
1436	chr4	111646966	111646967	rs10024267	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cardiac valvular disease	25,070 European ancestry cases, 440,457 European ancestry controls, 1,995 East Asian ancestry cases, 176,731 East Asian ancestry controls	NA	4q25		rs10024267-C	NR	5E-22		0.1467	[0.12-0.18] unit increase	Affymetrix, Illumina [25842568] (imputed)	N
1436	chr4	111654340	111654341	rs143269342	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	4q25	PITX2, C4orf32	rs143269342-C	0.99	8E-12	(EA)	1.37		Affymetrix, Illumina [up to 12149979] (imputed)	N
1436	chr4	111656591	111656592	rs112599895	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	4q25	PITX2, C4orf32	rs112599895-G	0.01	7E-71	(EA)	1.9		Affymetrix, Illumina [up to 12149979] (imputed)	N
1436	chr4	111658393	111658394	rs75021220	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	4q25	PITX2, C4orf32	rs75021220-T	0.12	2E-340	(EA)	1.57		Affymetrix, Illumina [up to 12149979] (imputed)	N
1436	chr4	111658393	111658394	rs75021220	27068588	Chauhan G	2016-04-07	Lancet Neurol	Identification of additional risk loci for stroke and small vessel disease: a meta-analysis of genome-wide association studies.	Ischemic stroke (cardioembolic)	602 European ancestry cases, 80,613 European ancestry controls	579 European ancestry cases, 3,427 African unspecified, Hispanic and European ancestry cases, 18,515 European ancestry controls, 32,473 African unspecified, Hispanic and European ancestry controls	4q25	PITX2	rs75021220-?		1E-25		1.4	[1.31-1.49]	Affymetrix, Illumina [NR] (imputed)	N
1436	chr4	111664157	111664158	rs17042098	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls	NA	4q25	RP11-777N19.1	rs17042098-A	0.101276	5E-9		0.07974993	[0.053-0.106] unit increase	Affymetrix [7288503] (imputed)	N
1436	chr4	111668625	111668626	rs17042102	31919418	Shah S	2020-01-09	Nat Commun	Genome-wide association and Mendelian randomisation analysis provide insights into the pathogenesis of heart failure.	Heart failure	47,309 European ancestry cases, 930,014 European ancestry controls	NA	4q25	PITX2, FAM241A	rs17042102-A	0.12	6E-20		1.12	[1.09-1.14]	Affymetrix, Illumina [8246881] (imputed)	N
1437	chr4	111677040	111677041	rs2634074	26708676	Pulit SL	2015-12-18	Lancet Neurol	Loci associated with ischaemic stroke and its subtypes (SiGN): a genome-wide association study.	Ischemic stroke	14,300 European ancestry cases, 1,609 African ancestry cases, 942 Hispanic cases, 26,690 European ancestry controls, 3,354 African ancestry controls, 2,429 Hispanic controls	996 African ancestry cases, 219 East Asian ancestry cases, 17,334 European ancestry cases, 548 Hispanic cases, 2,385 South Asian ancestry cases, 5,811 African ancestry controls, 329 East Asian ancestry controls, 350,928 European ancestry controls, 686 Hispanic controls, 5,193 South Asian ancestry controls	4q25	PITX2	rs2634074-T	0.021	3E-14		1.1	[1.07-1.12]	Illumina [up to 15400000] (imputed)	N
1437	chr4	111685614	111685615	rs2466455	33893285	Guindo-Martinez M	2021-04-23	Nat Commun	The impact of non-additive genetic associations on age-related complex diseases.	Cardiovascular disease	15,009 European ancestry cases, 41,628 European ancestry controls	NA	4q25		rs2466455-T	0.7866845	9E-9		0.9		Affymetrix [15613247] (imputed)	N
1437	chr4	111688751	111688752	rs2723334	28416818	Christophersen IE	2017-04-17	Nat Genet	Large-scale analyses of common and rare variants identify 12 new loci associated with atrial fibrillation.	Atrial fibrillation	837 Japanese ancestry cases, 3,293 Japanese controls	8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls.	4q25	PITX2	rs2723334-T	0.7	8E-46		1.94	[1.98-2.25]	Affymetrix, Illumina [11795432] (imputed)	N
1437	chr4	111696650	111696651	rs6847935	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	4q25	PITX2, C4orf32	rs6847935-T	0.22	2E-427	(EA)	1.48	[1.45-1.5]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1437	chr4	111697652	111697653	rs78229461	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic heart failure	14,262 European ancestry cases, 471,898 European ancestry controls, 10,540 East Asian ancestry cases, 168,186 East Asian ancestry controls	NA	4q25		rs78229461-T	NR	9E-17		0.0985	[0.075-0.122] unit increase	Affymetrix, Illumina [25844553] (imputed)	N
1437	chr4	111699325	111699326	rs12646447	24262325	Dichgans M	2013-11-21	Stroke	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Ischemic stroke	12,389 cases, 62,004 controls	NA	4q25	PITX2	rs12646447-C	NR	3E-8		1.14	[1.09-1.20]	Affymetrix, Illumina [~ 2500000] (imputed)	N
1437	chr4	111699684	111699685	rs67249485	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	4q25	PITX2	rs67249485-T	0.199	7E-443		1.44	[1.42-1.46]	Illumina [34740186] (imputed)	N
1437	chr4	111703509	111703510	rs7689774	33580673	Thorolfsdottir RB	2021-02-13	Eur Heart J	Genetic insight into sick sinus syndrome.	Sick sinus syndrome	6,189 European ancestry cases, 931,046 European ancestry controls	280 Norwegian ancestry cases, 69,141 Norwegian ancestry controls	4q25	PITX2, MIR297	rs7689774-T	0.2007	2E-15		1.21	[1.15-1.26]	Affymetrix, Illumina [NR] (imputed)	N
1437	chr4	111704198	111704199	rs2129981	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Congestive heart failure	9,413 Japanese ancestry cases, 203,040 Japanese ancestry controls	NA	4q25		rs2129981-T	0.450122621	1E-8		1.0909361	[1.058978995-1.123857469]	Illumina [8919992] (imputed)	N
1437	chr4	111705294	111705295	rs12639654	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antithrombotic agents)	67,653 European ancestry cases, 85,986 European ancestry controls, 54,220 East Asian ancestry cases, 124,506 East Asian ancestry controls	NA	4q25		rs12639654-T	NR	4E-20		0.0591	[0.047-0.072] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1437	chr4	111705767	111705768	rs6817105	28460022	Lee JY	2017-04-27	Eur Heart J	Korean atrial fibrillation network genome-wide association study for early-onset atrial fibrillation identifies novel susceptibility loci.	Early onset atrial fibrillation	672 Korean ancestry cases, 3,700 Korean ancestry controls	200 Korean ancestry cases, 1,812 Korean ancestry controls	4q25	PITX2	rs6817105-C	0.525	6E-38		2.43	[2.12-2.78]	Affymetrix [642422]	N
1437	chr4	111705767	111705768	rs6817105	22544366	Ellinor PT	2012-04-29	Nat Genet	Meta-analysis identifies six new susceptibility loci for atrial fibrillation.	Atrial fibrillation	6,707 European ancestry cases, 52,426 European ancestry controls	5,381 European ancestry casses, 10,030 European ancestry  controls	4q25	PITX2	rs6817105-C	0.13	2E-74		1.64	[1.55-1.73]	Affymetrix, Illumina [~ 2500000] (imputed)	N
1437	chr4	111708286	111708287	rs17042171	19597492	Benjamin EJ	2009-07-13	Nat Genet	Variants in ZFHX3 are associated with atrial fibrillation in individuals of European ancestry.	Atrial fibrillation	3,413 cases, 37,105 referents	2,145 cases, 4,073 controls	4q25	PITX2	rs17042171-A	0.12	4E-63		1.65		Affymetrix, Illumina [~ 2500000] (imputed)	N
1437	chr4	111710168	111710169	rs2200733	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (beta blocking agents)	20,367 East Asian ancestry cases, 158,359 East Asian ancestry controls	NA	4q25		rs2200733-T	0.45506682	1E-12		0.077890135	[0.056-0.099] unit increase	Illumina [13134967] (imputed)	N
1437	chr4	111710168	111710169	rs2200733	26708676	Pulit SL	2015-12-18	Lancet Neurol	Loci associated with ischaemic stroke and its subtypes (SiGN): a genome-wide association study.	Ischemic stroke (cardioembolic)	up to 3,400 European ancestry cases, up to 208 African ancestry cases, up to 118 Hispanic cases, 26,690 European ancestry controls, 3,354 African ancestry controls, 2,429 Hispanic controls	98 African ancestry cases, 31 East Asian ancestry cases, 3,436 European ancestry cases, 97 Hispanic cases, 422 South Asian ancestry cases, 2,917 African ancestry controls, 329 East Asian ancestry controls, 274,063 European ancestry controls, 686 Hispanic controls, 5,193 South Asian ancestry controls	4q25	PITX2	rs2200733-T	0.12	3E-32	(CCSp)	1.37	[1.30-1.45]	Illumina [up to 15400000] (imputed)	N
1437	chr4	111710168	111710169	rs2200733	19597491	Gudbjartsson DF	2009-07-13	Nat Genet	A sequence variant in ZFHX3 on 16q22 associates with atrial fibrillation and ischemic stroke.	Atrial fibrillation	2,385 European ancestry cases, 33,752 European ancestry controls	up to 2,427 European ancestry cases, 3,379 European ancestry controls, 286 Han Chinese ancestry cases, 2,763 Han Chinese ancestry controls	4q25	intergenic	rs2200733-?	0.12	1E-14		1.42	[NR]	Illumina [303136]	N
1437	chr4	111710168	111710169	rs2200733	18991354	Gretarsdottir S	2008-10-01	Ann Neurol	Risk variants for atrial fibrillation on chromosome 4q25 associate with ischemic stroke.	Stroke (ischemic)	1,661 European ancestry cases, 10,815 European ancestry controls	4,576 European ancestry cases, 19,343 European ancestry controls	4q25	NR	rs2200733-T	0.11	2E-10		1.26	[1.17-1.35]	Illumina [310881]	N
1437	chr4	111710168	111710169	rs2200733	17603472	Gudbjartsson DF	2007-07-01	Nature	Variants conferring risk of atrial fibrillation on chromosome 4q25.	Atrial fibrillation/atrial flutter	550 European ancestry cases, 4,476 European ancestry controls	3,030 European ancestry cases, 14,780 European ancestry controls, 333 Han Chinese ancestry cases, 2,836 Han Chinese ancestry controls	4q25	PITX2, ENPEP	rs2200733-T	0.11	3E-41		1.72	[1.59-1.86]	Illumina [316515]	N
1437	chr4	111710541	111710542	rs61303432	28416818	Christophersen IE	2017-04-17	Nat Genet	Large-scale analyses of common and rare variants identify 12 new loci associated with atrial fibrillation.	Prevalent atrial fibrillation	8,656 European ancestry cases, 102,776 European ancestry controls.		4q25	PITX2	rs61303432-T	0.14	7E-92		1.71	1.62-1.8	Affymetrix, Illumina [at least 3187278] (imputed)	N
1437	chr4	111710920	111710921	rs75725917	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls, 20,367 East Asian ancestry cases, 158,359 East Asian ancestry controls	NA	4q25		rs75725917-A	NR	1E-19		0.0775	[0.061-0.094] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1437	chr4	111711101	111711102	rs4540107	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atrial fibrillation/atrial flutter	4,150 East Asian ancestry cases, 155,540 East Asian ancestry controls	NA	4q25		rs4540107-A	0.4456686	2E-101		0.49842852	[0.45-0.54] unit increase	Illumina [13427194] (imputed)	N
1437	chr4	111712235	111712236	rs1906596	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Ventricular arrhythmia	1,673 East Asian ancestry cases, 155,540 East Asian ancestry controls	NA	4q25		rs1906596-T	0.553132048	4E-11		0.23275596	[0.16-0.3] unit decrease	Illumina [13426630] (imputed)	N
1437	chr4	111712235	111712236	rs1906596	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Ventricular arrhythmia	1,018 European ancestry cases, 327,198 European ancestry controls, 1,673 East Asian ancestry cases, 155,540 East Asian ancestry controls	NA	4q25		rs1906596-T	NR	2E-10		0.2039	[0.14-0.27] unit decrease	Affymetrix, Illumina [20454847] (imputed)	N
1437	chr4	111712235	111712236	rs1906596	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antithrombotic agents)	54,220 East Asian ancestry cases, 124,506 East Asian ancestry controls	NA	4q25		rs1906596-T	0.543643419	6E-19		0.070387684	[0.055-0.086] unit decrease	Illumina [13429980] (imputed)	N
1437	chr4	111712431	111712432	rs2129977	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	4q25	PITX2, C4orf32	rs2129977-A	0.32	6E-9	(AA)	1.32	[1.20-1.45]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1437	chr4	111712431	111712432	rs2129977	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	4q25	PITX2, C4orf32	rs2129977-A	0.26	3E-525		1.49	[1.47-1.52]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1437	chr4	111712431	111712432	rs2129977	28416818	Christophersen IE	2017-04-17	Nat Genet	Large-scale analyses of common and rare variants identify 12 new loci associated with atrial fibrillation.	Atrial fibrillation	15,979 European ancestry cases, 102,776 European ancestry controls.	NA	4q25	PITX2	rs2129977-A	0.22	7E-136		1.45	[1.41-1.49]	Affymetrix, Illumina [11795432] (imputed)	N
1437	chr4	111712685	111712686	rs1906599	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	4q25	PITX2	rs1906599-T	0.216964	7E-12	(-54 ms)	0.0474848	[0.034-0.061] unit increase	Affymetrix [10000000] (imputed)	N
1437	chr4	111712685	111712686	rs1906599	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	4q25	PITX2	rs1906599-T	0.216964	7E-12	(-52 ms)	0.0475756	[0.034-0.061] unit increase	Affymetrix [10000000] (imputed)	N
1437	chr4	111712685	111712686	rs1906599	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	4q25	PITX2	rs1906599-T	0.216964	3E-10	(-58 ms)	0.0437669	[0.03-0.057] unit increase	Affymetrix [10000000] (imputed)	N
1437	chr4	111712685	111712686	rs1906599	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	4q25	PITX2	rs1906599-T	0.216964	3E-10	(-56 ms)	0.0438113	[0.03-0.057] unit increase	Affymetrix [10000000] (imputed)	N
1437	chr4	111712685	111712686	rs1906599	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	4q25	PITX2	rs1906599-T	0.216964	1E-10	(-50 ms)	0.0448085	[0.031-0.058] unit increase	Affymetrix [10000000] (imputed)	N
1437	chr4	111714418	111714419	rs13143308	32602732	Baldassari AR	2020-06-30	Circ Genom Precis Med	Multi-ethnic Genome-wide Association Study of Decomposed Cardioelectric Phenotypes Illustrates Strategies to Identify and Characterize Evidence of Shared Genetic Effects for Complex Traits.	Electrocardiographic traits (multivariate)	17,873 European ancestry individuals, 12,749 Hispanic individuals, 5,408 African American individuals, 315 Chinese-American individuals	NA	4q25	PITX2	rs13143308-T	NR	5E-9				Affymetrix, Illumina [22000000] (imputed)	N
1437	chr4	111714418	111714419	rs13143308	32047268	von Berg J	2020-02-11	Eur J Hum Genet	Alternate approach to stroke phenotyping identifies a genetic risk locus for small vessel stroke.	Cardioembolic stroke (TOAST classification)	3,333 European and African ancestry cases, 28,026 European and unknown ancestry controls	NA	4q25	PITX2	rs13143308-?	NR	6E-24		1.2314478	[1.183-1.282]	Illumina [~ 10156805] (imputed)	N
1437	chr4	111714418	111714419	rs13143308	32047268	von Berg J	2020-02-11	Eur J Hum Genet	Alternate approach to stroke phenotyping identifies a genetic risk locus for small vessel stroke.	Cardioembolic stroke (CCSp classification)	3,608 European and African ancestry cases, 28,026 European and unknown ancestry controls	NA	4q25	PITX2	rs13143308-?	NR	3E-25		1.2493165	[1.198-1.303]	Illumina [~ 10156805] (imputed)	N
1437	chr4	111714418	111714419	rs13143308	32047268	von Berg J	2020-02-11	Eur J Hum Genet	Alternate approach to stroke phenotyping identifies a genetic risk locus for small vessel stroke.	Cardioembolic stroke (CCSc classification)	3,000 European and African ancestry cases, 28,026 European and unknown ancestry controls	NA	4q25	PITX2	rs13143308-?	NR	4E-20		1.2197585	[1.169-1.273]	Illumina [~ 10156805] (imputed)	N
1437	chr4	111714418	111714419	rs13143308	32047268	von Berg J	2020-02-11	Eur J Hum Genet	Alternate approach to stroke phenotyping identifies a genetic risk locus for small vessel stroke.	Cardioembolic stroke (CCS or TOAST classification)	4,502 European and African ancestry cases, 28,026 European and unknown ancestry controls	NA	4q25	PITX2	rs13143308-?	NR	2E-25		1.2128284	[1.170-1.258]	Illumina [~ 10156805] (imputed)	N
1437	chr4	111714418	111714419	rs13143308	32047268	von Berg J	2020-02-11	Eur J Hum Genet	Alternate approach to stroke phenotyping identifies a genetic risk locus for small vessel stroke.	Cardioembolic stroke (CCS and TOAST classification)	2,219 European and African ancestry cases, 28,026 European and unknown ancestry controls	NA	4q25	PITX2	rs13143308-?	NR	2E-21		1.2907783	[1.225-1.360]	Illumina [~ 10156805] (imputed)	N
1437	chr4	111714418	111714419	rs13143308	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Stroke	40,585 European ancestry cases, 406,111 European ancestry controls, 17,369 East Asian ancestry cases, 28,195 East Asian ancestry controls, 2,437 South Asian ancestry cases, 6,707 South Asian ancestry controls, 5,541 African American cases, 15,154 African American controls, 365 Asian ancestry cases, 333 Asian ancestry controls, 865 Latin American cases, 692 Latin American controls	NA	4q25	PITX2	rs13143308-?	NR	2E-15				NR [~ 8000000] (imputed)	N
1437	chr4	111714418	111714419	rs13143308	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Stroke	40,585 European ancestry cases, 406,111 European ancestry controls	NA	4q25	PITX2	rs13143308-?	NR	2E-13				NR [~ 8000000] (imputed)	N
1437	chr4	111714418	111714419	rs13143308	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Ischemic stroke (cardioembolic)	7,193 European ancestry cases, 406,111 European ancestry controls, 847 East Asian ancestry cases, 28,195 East Asian ancestry controls, 422 South Asian ancestry cases, 6,707 South Asian ancestry controls, 414 African American cases, 15,146 African American controls, 31 Asian ancestry cases, 333 Asian ancestry controls, 99 Latin American cases, 692 Latin American controls	NA	4q25	PITX2	rs13143308-?	NR	2E-47				NR [~ 8000000] (imputed)	N
1437	chr4	111714418	111714419	rs13143308	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Ischemic stroke (cardioembolic)	7,193 European ancestry cases, 406,111 European ancestry controls	NA	4q25	PITX2	rs13143308-?	NR	5E-41				NR [~ 8000000] (imputed)	N
1437	chr4	111714418	111714419	rs13143308	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Ischemic stroke	34,217 European ancestry cases, 406,111 European ancestry controls, 17,369 East Asian ancestry cases, 28,195 East Asian ancestry controls, 2,437 South Asian ancestry cases, 6,707 South Asian ancestry controls, 5,541 African American cases, 15,146 African American controls, 222 Asian ancestry cases, 333 Asian ancestry controls, 555 Latin American cases, 692 Latin American controls	NA	4q25	PITX2	rs13143308-?	NR	1E-15				NR [~ 8000000] (imputed)	N
1437	chr4	111714418	111714419	rs13143308	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Ischemic stroke	34,217 European ancestry cases, 406,111 European ancestry controls	NA	4q25	MIR297, PITX2	rs13143308-?	NR	5E-14				NR [~ 8000000] (imputed)	N
1437	chr4	111714888	111714889	rs2220427	28416822	Low SK	2017-04-17	Nat Genet	Identification of six new genetic loci associated with atrial fibrillation in the Japanese population.	Atrial fibrillation	8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls	3,120 Japanese ancestry cases, 125,064 Japanese ancestry controls, 15,993 European ancestry cases, 113,719 European ancestry controls	4q25	PITX2	rs2220427-T	0.45	2E-134	(Japanese)	1.707	[1.635-1.783]	Illumina [5018049] (imputed)	N
1437	chr4	111716512	111716513	rs12644625	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atrial fibrillation/atrial flutter	29,212 European ancestry cases, 400,539 European ancestry controls, 4,150 East Asian ancestry cases, 155,540 East Asian ancestry controls	NA	4q25		rs12644625-T	NR	6E-306		0.4969	[0.47-0.52] unit increase	Affymetrix, Illumina [25830072] (imputed)	N
1437	chr4	111716512	111716513	rs12644625	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Arrhythmia	17,861 Japanese ancestry cases, 194,592 Japanese ancestry controls	NA	4q25		rs12644625-T	0.447963778	1E-187		1.3943157	[1.363567749-1.425756963]	Illumina [8919992] (imputed)	N
1437	chr4	111718066	111718067	rs6843082	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	4q25	PITX2, C4orf32	rs6843082-G	0.22	4E-427	(EA)	1.47		Affymetrix, Illumina [up to 12149979] (imputed)	N
1437	chr4	111718066	111718067	rs6843082	28416822	Low SK	2017-04-17	Nat Genet	Identification of six new genetic loci associated with atrial fibrillation in the Japanese population.	Atrial fibrillation	8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls	3,120 Japanese ancestry cases, 125,064 Japanese ancestry controls, 15,993 European ancestry cases, 113,719 European ancestry controls	4q25	PITX2	rs6843082-G	0.68	1E-126	(Japanese)	1.842	[1.751-1.939]	Illumina [5018049] (imputed)	N
1437	chr4	111718066	111718067	rs6843082	28416818	Christophersen IE	2017-04-17	Nat Genet	Large-scale analyses of common and rare variants identify 12 new loci associated with atrial fibrillation.	Incident atrial fibrillation	7,323 European ancestry cases, 102,776 European ancestry controls.		4q25	PITX2	rs6843082-G	0.21	8E-57		1.38	1.33-1.44	Affymetrix, Illumina [at least 3187278] (imputed)	N
1437	chr4	111718066	111718067	rs6843082	28416818	Christophersen IE	2017-04-17	Nat Genet	Large-scale analyses of common and rare variants identify 12 new loci associated with atrial fibrillation.	Atrial fibrillation	641 African American cases, 5,234 African American controls	447 African American cases, 442 African American controls	4q25	PITX2	rs6843082-G	0.3	4E-8		1.4	[1.24-1.58]	Affymetrix, Illumina [11795432] (imputed)	N
1437	chr4	111718066	111718067	rs6843082	28416818	Christophersen IE	2017-04-17	Nat Genet	Large-scale analyses of common and rare variants identify 12 new loci associated with atrial fibrillation.	Atrial fibrillation	15,979 European ancestry cases, 102,776 European ancestry controls, 641 African American cases, 5,234 African American controls, 837 Japanese ancestry cases, 3,293 Japanese controls, 277 Hispanic cases, 3,081 Hispanic controls,197 Brazilian ancestry cases, 758 Brazilian ancestry controls.	8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls.	4q25	PITX2	rs6843082-G	0.25	3E-155		1.45	[1.41-1.99]	Affymetrix, Illumina [11795432] (imputed)	N
1437	chr4	111718066	111718067	rs6843082	28416818	Christophersen IE	2017-04-17	Nat Genet	Large-scale analyses of common and rare variants identify 12 new loci associated with atrial fibrillation.	Atrial fibrillation	15,979 European ancestry cases, 102,776 European ancestry controls, 641 African American cases, 5,234 African American controls, 837 Japanese ancestry cases, 3,293 Japanese controls, 277 Hispanic cases, 3,081 Hispanic controls,197 Brazilian ancestry cases, 758 Brazilian ancestry controls.	3,666 cases, 139,852 controls	4q25	PITX2	rs6843082-G	0.25	2E-62		1.6	[1.51-1.69]	Affymetrix, Illumina [11795432] (imputed)	N
1437	chr4	111718066	111718067	rs6843082	23041239	Traylor M	2012-10-05	Lancet Neurol	Genetic risk factors for ischaemic stroke and its subtypes (the METASTROKE collaboration): a meta-analysis of genome-wide association studies.	Stroke (ischemic)	12,389 European ancestry cases, 62,004 European ancestry controls	1,322 Pakistani ancestry cases, 1,143 Pakistani ancestry controls, 12,025 European ancestry cases, 27,940 European ancestry controls	4q25	PITX2	rs6843082-G	0.21	3E-16	(CS)	1.36	[1.27-1.47]	Affymetrix, Illumina [NR] (imputed)	N
1437	chr4	111718066	111718067	rs6843082	23041239	Traylor M	2012-10-05	Lancet Neurol	Genetic risk factors for ischaemic stroke and its subtypes (the METASTROKE collaboration): a meta-analysis of genome-wide association studies.	Stroke (ischemic)	12,389 European ancestry cases, 62,004 European ancestry controls	1,322 Pakistani ancestry cases, 1,143 Pakistani ancestry controls, 12,025 European ancestry cases, 27,940 European ancestry controls	4q25	PITX2	rs6843082-G	0.21	2E-7	(IS)	1.11	[1.06-1.15]	Affymetrix, Illumina [NR] (imputed)	N
1437	chr4	111718066	111718067	rs6843082	20173747	Ellinor PT	2010-02-21	Nat Genet	Common variants in KCNN3 are associated with lone atrial fibrillation.	Atrial fibrillation	1,335 European ancestry cases, 12,844 European ancestry controls	1,164 European ancestry cases, 3,607 European ancestry controls	4q25	PITX2	rs6843082-G	0.26	3E-28		2.03	[1.79-2.30]	Affymetrix, Illumina [~ 2500000] (imputed)	N
1437	chr4	111718146	111718147	rs13105878	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	4q25	PITX2, C4orf32	rs13105878-C	0.9	2E-39	(EA)	1.2		Affymetrix, Illumina [up to 12149979] (imputed)	N
1437	chr4	111720760	111720761	rs10033464	17603472	Gudbjartsson DF	2007-07-01	Nature	Variants conferring risk of atrial fibrillation on chromosome 4q25.	Atrial fibrillation/atrial flutter	550 European ancestry cases, 4,476 European ancestry controls	3,030 European ancestry cases, 14,780 European ancestry controls, 333 Han Chinese ancestry cases, 2,836 Han Chinese ancestry controls	4q25	PITX2, ENPEP	rs10033464-T	0.08	7E-11		1.39	[1.26-1.53]	Illumina [316515]	N
1437	chr4	111720996	111720997	rs2129979	30392061	Orlova E	2018-11-03	Hum Genet	Genetic association and differential expression of PITX2 with acute appendicitis.	Appendicitis	18,773 European ancestry cases, 114,907 European ancestry controls	59 European ancestry cases, 607 European ancestry controls, 7,267 Icelandic ancestry cases, 327,134 Icelandic ancestry controls, 1,139 Dutch ancestry cases, 4,587 Dutch ancestry controls	4q25	PITX2	rs2129979-G	0.31	2E-23		1.12	1.09-1.14	Illumina [NR] (imputed)	N
1437	chr4	111730411	111730412	rs12506083	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Arrhythmia	17,861 Japanese ancestry cases, 194,592 Japanese ancestry controls	NA	4q25		rs12506083-C	NR	6E-37	(conditional)	1.2357736	[1.19603958174599-1.27682763831639]	Illumina [8919992] (imputed)	N
1437	chr4	111731935	111731936	rs6533530	27790247	He L	2016-11-03	Front Genet	Pleiotropic Meta-Analyses of Longitudinal Studies Discover Novel Genetic Variants Associated with Age-Related Diseases.	Age-related diseases, mortality and associated endophenotypes	9,618 European ancestry individuals	19,796 European ancestry individuals	4q25	NR	rs6533530-?	NR	1E-7				Affymetrix [NR]	N
1437	chr4	111734135	111734136	rs3853444	24778558	Domarkiene I	2013-12-01	Balkan J Med Genet	RTN4 and FBXL17 Genes are Associated with Coronary Heart Disease in Genome-Wide Association Analysis of Lithuanian Families.	Coronary heart disease	31 European ancestry cases and 63 European ancestry controls from 32 families	NA	4q25	intergenic	rs3853444-G	NR	5E-6		7.69	[2.70-20.0]	Illumina [646445]	N
1437	chr4	111736881	111736882	rs17570669	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	4q25	PITX2, C4orf32	rs17570669-A	0.92	1E-15	(EA)	1.13		Affymetrix, Illumina [up to 12149979] (imputed)	N
1437	chr4	111761486	111761487	rs3853445	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Arrhythmia	17,861 Japanese ancestry cases, 194,592 Japanese ancestry controls	NA	4q25		rs3853445-C	NR	3E-41		0.84994215	[0.830047636906527-0.870313535918292]	Illumina [8919992] (imputed)	N
1437	chr4	111761486	111761487	rs3853445	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	4q25	PITX2	rs3853445-T	0.734	4E-52		1.16	[1.13-1.18]	Illumina [34740186] (imputed)	N
1437	chr4	111761486	111761487	rs3853445	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	4q25	PITX2, C4orf32	rs3853445-T	0.74	6E-113	(EA)	1.22		Affymetrix, Illumina [up to 12149979] (imputed)	N
1437	chr4	111761486	111761487	rs3853445	28416822	Low SK	2017-04-17	Nat Genet	Identification of six new genetic loci associated with atrial fibrillation in the Japanese population.	Atrial fibrillation	8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls	3,120 Japanese ancestry cases, 125,064 Japanese ancestry controls, 15,993 European ancestry cases, 113,719 European ancestry controls	4q25	PITX2	rs3853445-T	0.67	2E-34	(Japanese)	1.33	[1.271-1.391]	Illumina [5018049] (imputed)	N
1437	chr4	111780840	111780841	rs186824222	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Hepatitis B	1,425 European ancestry cases, 218,180 European ancestry controls	NA	4q25	NR	rs186824222-?	NR	3E-6		1.855	[0.88-2.83] unit increase	Illumina [at least 560000] (imputed)	N
1437	chr4	111781005	111781006	rs149829837	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	4q25	MIR297	rs149829837-A	0.05	1E-38	(EA)	1.28		Affymetrix, Illumina [up to 12149979] (imputed)	N
1438	chr4	111806548	111806549	rs9992954	30218097	Munz M	2018-09-14	Eur J Hum Genet	Meta-analysis of genome-wide association studies of aggressive and chronic periodontitis identifies two novel risk loci.	Periodontitis	4,102 European ancestry cases, 8,489 European ancestry controls	993 European ancestry cases, 1,419 European ancestry controls	4q25		rs9992954-T		9E-6		1.18	[1.10-1.27]	Affymetrix, Illumina [1722107] (imputed)	N
1438	chr4	111843670	111843671	rs514892	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 15)	3,566 European ancestry individuals	4,680 European ancestry individuals	4q25		rs514892-G	0.130736544	2E-9				Illumina [7417619] (imputed)	N
1438	chr4	111847989	111847990	rs17587768	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin I concentration	1,606 African American individuals	NA	4q25		rs17587768-?	NR	6E-6		0.21	[0.12-0.3] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1438	chr4	111868123	111868124	rs530577613	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	4q25	LYPLA1P2	rs530577613-C	0.0018	3E-6		0.7959	[0.46-1.13] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1438	chr4	111925655	111925656	rs79399769	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	4q25	PITX2	rs79399769-C	0.966	2E-18		1.24	[1.18-1.30]	Illumina [34740186] (imputed)	N
1439	chr4	111963718	111963719	rs17527016	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	23,963 European ancestry cases, 306,942 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	43,254 European ancestry cases, 1,471,118 European ancestry controls	4q25	LOC105377364, PITX2	rs17527016-T	NR	6E-10		0.0585	unit decrease	Illumina [15409056] (imputed)	N
1439	chr4	111963718	111963719	rs17527016	29235454	Choquet H	2017-12-13	Nat Commun	A large multi-ethnic genome-wide association study identifies novel genetic loci for intraocular pressure.	Intraocular pressure	56,819 European ancestry individuals, 5,748 Hispanic/Latino individuals, 5,119 East Asian ancestry individuals, 2,070 African American individuals	37,930 European and Asian ancestry individuals	4q25	PITX2, C4orf32	rs17527016-?	NR	3E-10		0.1	[NR] unit increase	Affymetrix [at least 665000] (imputed)	N
1440	chr4	112120657	112120658	rs7690819	25317111	Seo I	2014-09-30	Genomics Inform	Genome-wide association study of medication adherence in chronic diseases in the korean population.	Medication adherence in chronic diseases	155 Korean ancestry medication non-adherent diabetes cases, 80 Korean ancestry medication non-adherent hypertensive cases, 240 Korean ancestry medication adherent diabetes cases, 827 Korean ancestry medication adherent hypertensive cases	NA	4q25	LYPLA1P2	rs7690819-G	0.521	1E-6		1.63	[1.34-2.00]	NR [349184]	N
1440	chr4	112123702	112123703	rs115332380	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	4q25	NR	rs115332380-?	NR	4E-12		15744.726	NR unit decrease	Illumina [2379855]	N
1440	chr4	112129354	112129355	rs9790778	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	4q25	NA	rs9790778-?		1E-8				Affymetrix, Illumina [NR] (imputed)	N
1440	chr4	112165211	112165212	rs1532170	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	4q25	PITX2	rs1532170-G	0.451	8E-18		1.07	[1.05-1.08]	Illumina [34740186] (imputed)	N
1440	chr4	112184750	112184751	rs35859699	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Platelet-derived growth factor BB levels	8,293 Finnish ancestry individuals	NA	4q25	NR	rs35859699-G		2E-6		0.3952	[0.23-0.56] SD units increase	NR [10700000] (imputed)	N
1441	chr4	112280741	112280742	rs1352733	31533690	Orlova E	2019-09-18	BMC Oral Health	Pilot GWAS of caries in African-Americans shows genetic heterogeneity.	Dental caries (decayed and filled deciduous teeth)	96 African American children	NA	4q25	NR	rs1352733-?		3E-6		2.372	[1.5-3.24] unit increase	Illumina [~ 4900000] (imputed)	N
1441	chr4	112323248	112323249	rs925161	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	4q25		rs925161-C	0.48	3E-8		0.0078	[0.0051-0.0105] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1442	chr4	112402557	112402558	rs906568	31809533	Han X	2019-09-06	Hum Mol Genet	Genome-wide association analysis of 95 549 individuals identifies novel loci and genes influencing optic disc morphology.	Optic disc size	67,040 British ancestry individuals	28,509 European ancestry individuals	4q25	C4orf32	rs906568-T	0.36	2E-13		0.01	unit decrease	Affymetrix [8928767] (imputed)	N
1442	chr4	112406960	112406961	rs72678859	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	4q25		rs72678859-C	0.833	2E-23		0.017	[0.013-0.021] unit increase	NR [NR] (imputed)	N
1442	chr4	112406960	112406961	rs72678859	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	4q25	NA	rs72678859-T		5E-13		0.0187238	[0.014-0.024] unit decrease	Illumina [13288253] (imputed)	N
1442	chr4	112407174	112407175	rs72890079	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	4q25	NR	rs72890079-A	NR	8E-6	(female)	0.1944	[0.11-0.28] unit decrease	Illumina [11133794] (imputed)	N
1442	chr4	112422144	112422145	rs72678864	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	4q25		rs72678864-G	0.829	2E-11		0.018	[0.012-0.024] unit increase	Affymetrix [up to 90000000] (imputed)	N
1442	chr4	112422144	112422145	rs72678864	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	4q25	C4orf32	rs72678864-A	0.1726	3E-10		0.018037062	[0.012-0.024] unit decrease	Affymetrix [11514654] (imputed)	N
1442	chr4	112422144	112422145	rs72678864	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	4q25	NR	rs72678864-A	0.161	2E-15		0.0117919	[0.0089-0.0147] unit decrease	NR [9732723] (imputed)	N
1442	chr4	112422144	112422145	rs72678864	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking cessation (MTAG)	up to 820,192 European ancestry individuals	NA	4q25	NR	rs72678864-A	0.16	1E-8		0.012035	[0.0079-0.0162] unit decrease	NR [9732723] (imputed)	N
1442	chr4	112422144	112422145	rs72678864	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	4q25	NR	rs72678864-A	0.158	3E-9		0.0119456	[0.008-0.0159] unit increase	NR [9732723] (imputed)	N
1442	chr4	112422144	112422145	rs72678864	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	4q25		rs72678864-?	NR	7E-12				NR [~ 8900000] (imputed)	N
1442	chr4	112422144	112422145	rs72678864	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	4q25	Intergenic	rs72678864-A	0.1622	2E-9	(MTAG)	0.0107	[0.0072-0.0142] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1442	chr4	112454294	112454295	rs138311480	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	4q25	PITX2	rs138311480-C	0.978	3E-9		1.18	[1.12-1.25]	Illumina [34740186] (imputed)	N
1443	chr4	112467611	112467612	rs3934797	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	4q25	NR	rs3934797-A	0.182	1E-10		0.021297466	[0.015-0.028] unit decrease	NR [~ 10000000] (imputed)	N
1443	chr4	112503871	112503872	rs11729080	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	4q25	intergenic	rs11729080-G	0.827802	4E-16		0.0221934	[0.017-0.028] unit decrease	NR [16516521] (imputed)	N
1443	chr4	112503871	112503872	rs11729080	26423011	Wain LV	2015-09-27	Lancet Respir Med	Novel insights into the genetics of smoking behaviour, lung function, and chronic obstructive pulmonary disease (UK BiLEVE): a genetic association study in UK Biobank.	Smoking status (heavy vs never)	24,457 European ancestry heavy smokers, 24,474 European ancestry never smokers	NA	4q25	PITX2, C4orf32	rs11729080-G	0.831	5E-8		1.1025358	[1.06-1.14]	Affymetrix [28509962] (imputed)	N
1444	chr4	112604820	112604821	rs114904067	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	4q25	PITX2	rs114904067-G	0.972	9E-9		1.13	[1.09-1.18]	Illumina [34740186] (imputed)	N
1444	chr4	112611749	112611750	rs10034228	21505071	Li Z	2011-04-19	Hum Mol Genet	A genome-wide association study reveals association between common variants in an intergenic region of 4q25 and high-grade myopia in the Chinese Han population.	Myopia (pathological)	102 Han Chinese ancestry cases, 335 Han Chinese ancestry controls	2,891 Han Chinese ancestry cases, 10,071 Han Chinese ancestry controls	4q25	MYP11	rs10034228-?	0.50	8E-13		1.23	[1.16-1.32]	Affymetrix [681783]	N
1444	chr4	112653075	112653076	rs1450786	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	4q25	NR	rs1450786-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
1444	chr4	112659153	112659154	rs1376216	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Photic sneeze reflex	32,446 European ancestry cases, 67,249 European ancestry controls	NA	4q25	C4orf32	rs1376216-?	NR	3E-31		1.13	[1.107-1.153]	Illumina [13729857] (imputed)	N
1444	chr4	112677084	112677085	rs1381010	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		4q25	C4orf32	rs1381010-G	0.695001	3E-8		0.00823717	[0.0053-0.0112] unit increase	Affymetrix [12370749]	N
1444	chr4	112686353	112686354	rs9991259	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	4q25		rs9991259-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1444	chr4	112702634	112702635	rs1585471	21505071	Li Z	2011-04-19	Hum Mol Genet	A genome-wide association study reveals association between common variants in an intergenic region of 4q25 and high-grade myopia in the Chinese Han population.	Myopia (pathological)	102 Han Chinese ancestry cases, 335 Han Chinese ancestry controls	2,891 Han Chinese ancestry cases, 10,071 Han Chinese ancestry controls	4q25	MYP11	rs1585471-?	0.50	2E-6		1.15	[1.09-1.22]	Affymetrix [681783]	N
1444	chr4	112714997	112714998	rs326888	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	4q25		rs326888-C	NR	1E-8		0.011	[0.0073-0.0147] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
1445	chr4	112747918	112747919	rs326845	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	4q25	NA	rs326845-A	0.3764	3E-11		0.0117	[0.0082-0.0152] unit decrease	NR [~ 27400000] (imputed)	N
1445	chr4	112749511	112749512	rs139235514	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial lung adenocarcinoma	775 European ancestry cases, 31,563 European ancestry controls	NA	4q25	RP11-269F21.3	rs139235514-C	0.006	9E-6		5.11	[2.48-10.51]	Illumina [8672852] (imputed)	N
1445	chr4	112781022	112781023	rs35286154	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	4q25	Intergenic	rs35286154-C	0.8898	1E-8		0.0177	[0.012-0.024] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1445	chr4	112790033	112790034	rs2351027	34356046	Oluwafemi OO	2021-07-01	Genes (Basel)	Genome-Wide Association Studies of Conotruncal Heart Defects with Normally Related Great Vessels in the United States.	Conotruncal heart defects with normally related great vessels	294 European ancestry cases, 2,976 European ancestry controls, 913 cases, 559 controls, 641 trios	NA	4q25		rs2351027-?	NR	3E-6				Affymetrix, Illumina [3311160] (imputed)	N
1445	chr4	112822730	112822731	rs11722569	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	4q25	NR	rs11722569-T	0.6586	3E-8		1.035	[1.02-1.05]	Affymetrix, Illumina [NR] (imputed)	N
1446	chr4	112871405	112871406	rs138915921	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	4q25	Intergenic	rs138915921-A	0.0713	4E-8	(MTAG)	0.0191	[0.012-0.026] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1446	chr4	112923236	112923237	rs17589290	21347282	Lettre G	2011-02-10	PLoS Genet	Genome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project.	Hypertension	4,069 African American cases, 3,848 African American controls	1,372 African American cases, 1,482 African American controls	4q25	intergenic	rs17589290-?	0.04	6E-6		1.4285715	[1.22-1.67]	Affymetrix [~ 2740000] (imputed)	N
1447	chr4	113073698	113073699	rs4834221	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	4q25	C4orf32	rs4834221-A	0.398337	1E-25		0.023640413	[0.019-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
1447	chr4	113074744	113074745	rs4834222	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	4q25		rs4834222-C	NR	6E-16		0.0173	[0.013-0.021] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
1447	chr4	113074744	113074745	rs4834222	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	4q25	C4orf32	rs4834222-T	NR	2E-7		1.0647359	NR	Affymetrix, Illumina [8278136] (imputed)	N
1447	chr4	113104760	113104760	rs35758634	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	4q25	C4orf32	rs35758634-GA	0.439428	1E-16		0.018523782	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1447	chr4	113111171	113111172	rs1521478	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	4q25	C4orf32	rs1521478-C	0.440002	3E-21		0.021019306	[0.017-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1447	chr4	113113914	113113915	rs28851880	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q25	NR	rs28851880-C	0.335025	3E-25				Affymetrix, Illumina [23472807] (imputed)	N
1447	chr4	113113914	113113915	rs28851880	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	4q25	NR	rs28851880-C	0.303111	6E-27		0.022787	[0.019-0.027] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1448	chr4	113115250	113115251	rs199568170	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	4q25		rs199568170-G	0.561	1E-15				Affymetrix [10369434] (imputed)	N
1448	chr4	113155763	113155764	rs72894908	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q25	NR	rs72894908-C	0.07666	8E-9	(CYP2E1)	0.1911	NR unit increase	Illumina [1671387] (imputed)	N
1448	chr4	113160273	113160274	rs34762579	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	4q25	NR	rs34762579-?	NR	5E-11				Affymetrix [NR]	N
1448	chr4	113207276	113207277	rs17604670	30891314	Saad MN	2019-01-18	J Adv Res	Studying the effects of haplotype partitioning methods on the RA-associated genomic results from the North American Rheumatoid Arthritis Consortium (NARAC) dataset.	Rheumatoid arthritis	868 European ancestry cases, 1,194 European ancestry controls	NA	4q25	TIFA	rs17604670-G	0.923	4E-8				NR [509413]	N
1449	chr4	113256736	113256737	rs59068084	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	4q25		rs59068084-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1449	chr4	113278510	113278511	rs4834267	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (unclassified genus belonging to the order Clostridiales)	1,068 Japanese ancestry individuals	NA	4q25	ALPK1, RTEL1P1	rs4834267-T	0.44	3E-7	(female)	0.238	[0.15-0.33] unit increase	Illumina [6380737] (imputed)	N
1449	chr4	113298427	113298428	rs73841009	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q25	NR	rs73841009-A	0.01394	2E-8	(EPHX1)	5.325	NR unit increase	Illumina [1671387] (imputed)	N
1449	chr4	113298658	113298659	rs77273710	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q25	NR	rs77273710-A	0.01045	2E-8	(EPHX1)	5.327	NR unit increase	Illumina [1671387] (imputed)	N
1449	chr4	113311789	113311790	rs4833407	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	4q25	C4orf32, TIFA, AP1AR, NEUROG2, LARP7, C4orf21, MIR367, MIR302D, MIR302A, MIR302C, MIR302B, ANK2	rs4833407-A	0.419958782877731	4E-8		0.016669314	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1449	chr4	113311789	113311790	rs4833407	22484627	Bradfield JP	2012-04-08	Nat Genet	A genome-wide association meta-analysis identifies new childhood  obesity loci.	Obesity	5,530 European ancestry cases, 8,318 European ancestry controls	2,214 European ancestry cases, 2,674 European ancestry controls	4q25	ALPK1	rs4833407-?	NR	1E-6		1.111	[1.065-1.160]	Affymetrix, Illumina [2700000] (imputed)	N
1449	chr4	113313985	113313986	rs4834272	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	4q25	NA	rs4834272-T	0.6852	3E-10		0.0108	[0.0075-0.0141] unit decrease	NR [~ 27400000] (imputed)	N
1449	chr4	113313985	113313986	rs4834272	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	4q25	NA	rs4834272-T	0.6852	3E-10		0.0108	[0.0075-0.0141] unit decrease	NR [~ 27400000] (imputed)	N
1449	chr4	113313985	113313986	rs4834272	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	4q25	ALPK1	rs4834272-C	0.31	1E-8		0.014	[0.01-0.018] unit increase	Illumina [6108953] (imputed)	N
1449	chr4	113323429	113323430	rs57590313	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	4q25		rs57590313-A	NR	9E-10		0.0136	[0.0093-0.0179] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1449	chr4	113323429	113323430	rs57590313	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		4q25	ALPK1	rs57590313-C	0.80729	1E-8		0.0101728	[0.0067-0.0137] unit decrease	Affymetrix [12370749]	N
1449	chr4	113328077	113328078	rs6838440	21799462	Srinivasan Y	2011-07-27	Pharmacogenet Genomics	Genome-wide association study of epirubicin-induced leukopenia in Japanese patients.	Epirubicin-induced leukopenia	67 Japanese ancestry cases, 203 Japanese ancestry controls	48 Japanese ancestry cases	4q25	ALPK1	rs6838440-C	0.51	3E-6		2.1	[1.49-2.96]	Illumina [478359]	N
1449	chr4	113329344	113329345	rs7687819	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	4q25	PITX2	rs7687819-A	0.771	9E-9		1.05	[1.03-1.06]	Illumina [34740186] (imputed)	N
1449	chr4	113352898	113352899	rs2074379	34417961	Guo D	2021-08-21	Biol Trace Elem Res	Preliminary study of genome-wide association identifies novel susceptibility genes for serum mineral elements in the Chinese Han population.	Serum magnesium levels	587 Han Chinese ancestry individuals	NA	4q25		rs2074379-?	NR	4E-6		0.09	[-3.72612-3.90612] unit decrease	Affymetrix [6423076] (imputed)	N
1449	chr4	113353284	113353285	rs11726117	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	4q25		rs11726117-?	NR	9E-9				NR [9705931] (imputed)	N
1450	chr4	113416782	113416783	rs6840242	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	4q25	NR	rs6840242-T	0.3975	4E-10	(Superior Parietal)	18.345873	[12.61-24.08] unit decrease	Affymetrix, Illumina [NR]	N
1450	chr4	113418637	113418638	rs13144474	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	4q25		rs13144474-T	0.45	6E-14		7.51	z score increase	Affymetrix [9061022] (imputed)	N
1450	chr4	113430751	113430752	rs12641188	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	4q25	NR	rs12641188-T	0.3946	2E-13				NR [9056863] (imputed)	N
1450	chr4	113430751	113430752	rs12641188	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	4q25	ALPK1, NEUROG2, C4orf21, LARP7	rs12641188-?		3E-8				NR [7428630] (imputed)	N
1450	chr4	113433293	113433294	rs6848238	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	4q25		rs6848238-C	0.41	3E-30		11.44	z score increase	Affymetrix [9061022] (imputed)	N
1450	chr4	113433293	113433294	rs6848238	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	4q25		rs6848238-C	0.41	6E-19		8.89	z score increase	Affymetrix [9061022] (imputed)	N
1450	chr4	113433293	113433294	rs6848238	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	4q25	NR	rs6848238-C	0.3946	7E-17				NR [9056863] (imputed)	N
1450	chr4	113439211	113439212	rs701760	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Meat-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	4q25	NEUROG2, LARP7	rs701760-?	NR	3E-8		0.0134451	[0.0087-0.0182] unit increase	Affymetrix [25921788] (imputed)	N
1451	chr4	113527071	113527072	rs62316615	31533690	Orlova E	2019-09-18	BMC Oral Health	Pilot GWAS of caries in African-Americans shows genetic heterogeneity.	Dental caries (decayed and filled deciduous teeth)	96 African American children	NA	4q25	LARP7, MIR302A	rs62316615-?		3E-6		8.023	[5.55-10.5] unit increase	Illumina [~ 4900000] (imputed)	N
1451	chr4	113544151	113544152	rs6834538	24722205	Kwak SH	2014-04-17	Hum Mol Genet	A genome-wide association study on thyroid function and anti-thyroid peroxidase antibodies in Koreans.	Free thyroxine concentration	2,789 Korean ancestry individuals	829 Korean ancestry individuals	4q25	C4orf21	rs6834538-T	0.03	5E-6		0.296	[0.17-0.42] ng/dl decrease	Affymetrix [1418709] (imputed)	N
1451	chr4	113568543	113568544	rs62317770	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	4q25		rs62317770-A	NR	4E-8		0.0124	[0.0081-0.0167] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1451	chr4	113570447	113570448	rs76032629	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Thyroid cancer	762 European ancestry cases, 410,350 European ancestry controls	NA	4q25		rs76032629-A	0.040918	6E-7		1.6798253	NR	Affymetrix [7846216] (imputed)	N
1451	chr4	113570638	113570639	rs4513633	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-16 levels	3,483 Finnish ancestry individuals	NA	4q25	NR	rs4513633-C		7E-7		0.2239	[0.14-0.31] SD units increase	NR [10700000] (imputed)	N
1451	chr4	113595868	113595869	rs6845321	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	4q25	NR	rs6845321-T	0.306	2E-8		0.00803745	[0.0052-0.0109] unit increase	NR [~ 9732723] (imputed)	N
1451	chr4	113595868	113595869	rs6845321	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	4q25		rs6845321-?	NR	1E-7				NR [~ 8900000] (imputed)	N
1451	chr4	113604957	113604958	rs58976051	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	4q25	NR	rs58976051-?	NR	7E-6		4.502	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1452	chr4	113683866	113683867	rs28515781	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-16 levels	3,483 Finnish ancestry individuals	NA	4q25	NR	rs28515781-C		3E-6		0.1332	[0.077-0.189] SD units decrease	NR [10700000] (imputed)	N
1452	chr4	113732089	113732090	rs34311906	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Stroke	40,585 European ancestry cases, 406,111 European ancestry controls, 17,369 East Asian ancestry cases, 28,195 East Asian ancestry controls, 2,437 South Asian ancestry cases, 6,707 South Asian ancestry controls, 5,541 African American cases, 15,154 African American controls, 365 Asian ancestry cases, 333 Asian ancestry controls, 865 Latin American cases, 692 Latin American controls	NA	4q25	ANK2	rs34311906-?	NR	1E-6				NR [~ 8000000] (imputed)	N
1452	chr4	113732089	113732090	rs34311906	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Stroke	40,585 European ancestry cases, 406,111 European ancestry controls	NA	4q25	ANK2	rs34311906-?	NR	4E-7				NR [~ 8000000] (imputed)	N
1452	chr4	113732089	113732090	rs34311906	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Ischemic stroke	34,217 European ancestry cases, 406,111 European ancestry controls, 17,369 East Asian ancestry cases, 28,195 East Asian ancestry controls, 2,437 South Asian ancestry cases, 6,707 South Asian ancestry controls, 5,541 African American cases, 15,146 African American controls, 222 Asian ancestry cases, 333 Asian ancestry controls, 555 Latin American cases, 692 Latin American controls	NA	4q25	ANK2	rs34311906-?	NR	1E-7				NR [~ 8000000] (imputed)	N
1452	chr4	113732089	113732090	rs34311906	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Ischemic stroke	34,217 European ancestry cases, 406,111 European ancestry controls	NA	4q25	ANK2	rs34311906-?	NR	1E-8				NR [~ 8000000] (imputed)	N
1452	chr4	113743653	113743654	rs570984510	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	225,112 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	445,360 individuals	4q25	intergenic	rs570984510-T	8.0E-4	1E-52		22.8921	[19.95-25.83] mmHg increase	Affymetrix [NR] (imputed)	N
1453	chr4	113779890	113779891	rs1448221	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (unclassified genus belonging to the order Clostridiales)	1,068 Japanese ancestry individuals	NA	4q25	ANK2	rs1448221-C	0.18	9E-7		0.202	[0.12-0.28] unit increase	Illumina [6380737] (imputed)	N
1453	chr4	113779890	113779891	rs1448221	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Coprococcus)	1,068 Japanese ancestry individuals	NA	4q25	ANK2	rs1448221-C	0.18	9E-6		0.0436	[0.024-0.063] unit increase	Illumina [6380737] (imputed)	N
1453	chr4	113780877	113780878	rs116164539	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q25	NR	rs116164539-T	0.01045	1E-8	(MYO1B)	0.1511	NR unit increase	Illumina [1671387] (imputed)	N
1453	chr4	113854559	113854560	rs41496644	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 157,769 European ancestry controls	NA	4q25	NR	rs41496644-?	NR	2E-7		0.1512	[0.094-0.208] unit decrease	Affymetrix, Illumina [12923718] (imputed)	N
1453	chr4	113855476	113855477	rs12500579	24315451	van der Valk RJ	2013-12-05	J Allergy Clin Immunol	Fraction of exhaled nitric oxide values in childhood are associated with 17q11.2-q12 and 17q12-q21 variants.	Fractional exhaled nitric oxide (childhood)	5,131 European ancestry individuals, 1,155 Hispanic individuals, 2,572 individuals	NA	4q25	ANK2	rs12500579-G	0.06	8E-8		0.194	[0.12-0.26] unit decrease	Affymetrix, Illumina [2253077] (imputed)	N
1453	chr4	113855476	113855477	rs12500579	24315451	van der Valk RJ	2013-12-05	J Allergy Clin Immunol	Fraction of exhaled nitric oxide values in childhood are associated with 17q11.2-q12 and 17q12-q21 variants.	Fractional exhaled nitric oxide (childhood)	5,131 European ancestry individuals, 1,155 Hispanic individuals, 2,572 individuals	NA	4q25	ANK2	rs12500579-G	0.01	5E-13	(EA)	0.42	[0.31-0.53] unit decrease	Affymetrix, Illumina [2253077] (imputed)	N
1454	chr4	113948789	113948790	rs10014072	23720494	Evans DM	2013-05-29	Hum Mol Genet	Genome-wide association study identifies loci affecting blood copper, selenium and zinc.	Blood trace element (Cu levels)	2,603 European ancestry individuals	NA	4q25	ANK2	rs10014072-?	NR	1E-6		0.164	[0.097-0.231] unit increase	Illumina [> 2500000] (imputed)	N
1454	chr4	113951408	113951409	rs11938726	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	4q25	NR	rs11938726-C	0.161	3E-6	(IFNalpha_ABC_of_CD56dimCD16p)			Illumina [5084123] (imputed)	N
1454	chr4	113954076	113954077	rs11728485	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	4q25	NR	rs11728485-T	0.161	3E-6	(IFNalpha_STAT4_of_CD8p_T)			Illumina [5084123] (imputed)	N
1454	chr4	113956402	113956403	rs62314881	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	4q25	NR	rs62314881-G	0.816701	2E-10		0.0106611	[0.0074-0.0139] unit increase	Affymetrix [16578495] (imputed)	N
1454	chr4	113956908	113956908	rs749512116	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	4q25	NR	rs749512116-CAGAT	0.816461	7E-20		0.0328564	[0.026-0.04] unit increase	Affymetrix [16580851] (imputed)	N
1454	chr4	113990942	113990943	rs4834311	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	4q25	ANK2	rs4834311-A	0.5831	1E-8		0.00978561	[0.0064-0.0132] unit decrease	Affymetrix [11880941] (imputed)	N
1454	chr4	114011087	114011088	rs10029516	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Periventricular white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	4q25	ANK2	rs10029516-T	0.5211	2E-6		0.0267	[0.016-0.038] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1455	chr4	114061535	114061536	rs17676256	32308125	Wolking S	2020-04-20	Pharmacogenomics	Pharmacoresponse in genetic generalized epilepsy: a genome-wide association study.	Response to levetiracetam in genetic generalized epilepsy	82 European ancestry responders, 127 European ancestry non-responders	NA	4q25	ANK2	rs17676256-?	NR	1E-7				Affymetrix, Illumina [at least 3287443] (imputed)	N
1455	chr4	114072903	114072904	rs11929834	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental longevity (combined parental age at death)	45,627 middle-aged British individuals	NA	4q25	NR	rs11929834-?	NR	8E-6		0.035426	[0.02-0.051] unit increase	Affymetrix [9658292] (imputed)	N
1455	chr4	114075687	114075688	rs9307388	35232999	Garcia-Etxebarria K	2022-03-01	Sci Rep	Local genetic variation of inflammatory bowel disease in Basque population and its effect in risk prediction.	Crohn's disease	284 European ancestry cases, 935 European ancestry controls	NA	4q25		rs9307388-T	0.027	7E-7		3.8		Illumina [5411261] (imputed)	N
1456	chr4	114186004	114186005	rs29413	33539483	Li Z	2021-02-04	PLoS One	Bivariate genome-wide association study (GWAS) of body mass index and blood pressure phenotypes in northern Chinese twins.	Systolic blood pressure and diastolic blood pressure (bivariate analysis)	274 Chinese ancestry dizygotic twins	NA	4q26	ANK2	rs29413-?	NR	3E-6				Illumina [7401356] (imputed)	N
1456	chr4	114209731	114209732	rs29356	31469255	Lule SA	2019-08-30	Mol Genet Genomic Med	A genome-wide association and replication study of blood pressure in Ugandan early adolescents.	Diastolic blood pressure	815 African ancestry early adolescents	NA	4q26	ANK2	rs29356-T	0.69	1E-6		1.91	[-5.6752-9.4952] unit increase	Illumina [20074711] (imputed)	N
1456	chr4	114250792	114250793	rs17045918	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	4q26	NR	rs17045918-?	NR	2E-7				Affymetrix [NR]	N
1457	chr4	114343868	114343869	rs17483653	32201043	Smeland OB	2020-02-08	Biol Psychiatry	Genome-wide Association Analysis of Parkinson's Disease and Schizophrenia Reveals Shared Genetic Architecture and Identifies Novel Risk Loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	NA	4q26	RNU1-138P	rs17483653-A		5E-7		0.1043	[0.064-0.145] unit increase	Illumina [NR]	N
1457	chr4	114352880	114352881	rs13129231	28437668	Jung J	2017-04-14	Psychiatry Res	Genome-wide association study of treatment response to venlafaxine XR in generalized anxiety disorder.	Venlafaxine response in generalised anxiety disorder (remitters vs non-remitters after 12 weeks)	98 European ancestry cases and controls	NA	4q26	intergenic	rs13129231-A	0.90	6E-6	(CGI)	5.88		Illumina [266820] (imputed)	N
1457	chr4	114360371	114360372	rs78738012	28892059	Chang D	2017-09-11	Nat Genet	A meta-analysis of genome-wide association studies identifies 17 new Parkinson's disease risk loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	5,851 European ancestry cases, 5,866 European ancestry controls	4q26	ANK2, CAMK2D	rs78738012-C	0.106	5E-11		1.13	[1.09-1.17]	Illumina [11933700] (imputed)	N
1457	chr4	114369064	114369065	rs13117519	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	4q26	CAMK2D	rs13117519-T	0.1744	1E-12		0.0875	[0.063-0.112] unit increase	NR [7784415] (imputed)	N
1457	chr4	114379378	114379379	rs1880529	23218918	Sprooten E	2012-12-04	Psychiatry Res	White matter integrity as an intermediate phenotype: exploratory genome-wide association analysis in individuals at high risk of bipolar disorder.	White matter integrity (bipolar disorder risk interaction)	70 unaffected relatives of cases with bipolar disorder, 80 controls	NA	4q26	CAMK2D	rs1880529-?	0.43	4E-6				Illumina [565404]	N
1457	chr4	114388819	114388820	rs2285703	28794112	Christophersen IE	2017-08-01	Circ Cardiovasc Genet	Fifteen Genetic Loci Associated With the Electrocardiographic P Wave.	P wave duration	37,678 European ancestry individuals, 6,778 African ancestry individuals	NA	4q26	CAMK2D	rs2285703-G	0.26	4E-8	(EA)	0.56	[0.36-0.76] ms increase	Affymetrix, Illumina [at least 2402234] (imputed)	N
1457	chr4	114393249	114393250	rs10017904	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Ischemic stroke (small-vessel)	5,386 European ancestry cases, 192,662 European ancestry controls, 5,096 East Asian ancestry cases, 28,195 East Asian ancestry controls, 314 South Asian ancestry cases, 6,707 South Asian ancestry controls, 694 African American cases, 15,146 African American controls, 134 Asian ancestry cases, 333 Asian ancestry controls, 86 Latin American cases, 692 Latin American controls	NA	4q26	CAMK2D	rs10017904-A	0.14	7E-7		1.17	[1.10-1.25]	NR [~ 8000000] (imputed)	N
1457	chr4	114401928	114401929	rs10029218	32047268	von Berg J	2020-02-11	Eur J Hum Genet	Alternate approach to stroke phenotyping identifies a genetic risk locus for small vessel stroke.	Small vessel stroke (CCS and TOAST classification)	1,548 European and African ancestry cases, 28,026 European and unknown ancestry controls	NA	4q26	CAMK2D	rs10029218-?	NR	1E-8		1.27	NR	Illumina [~ 10156805] (imputed)	N
1457	chr4	114411139	114411140	rs74697663	32602732	Baldassari AR	2020-06-30	Circ Genom Precis Med	Multi-ethnic Genome-wide Association Study of Decomposed Cardioelectric Phenotypes Illustrates Strategies to Identify and Characterize Evidence of Shared Genetic Effects for Complex Traits.	Electrocardiographic traits (multivariate)	17,873 European ancestry individuals, 12,749 Hispanic individuals, 5,408 African American individuals, 315 Chinese-American individuals	NA	4q26	CAMK2D	rs74697663-?	NR	6E-9				Affymetrix, Illumina [22000000] (imputed)	N
1457	chr4	114418005	114418006	rs17446418	30046033	van Setten J	2018-07-25	Nat Commun	PR interval genome-wide association meta-analysis identifies 50 loci associated with atrial and atrioventricular electrical activity.	PR interval	92,340 European ancestry individuals	NA	4q26	CAMK2D	rs17446418-G	0.26	3E-9		0.8	[0.55-1.05] ms increase	Affymetrix, Illumina [2712613] (imputed)	N
1457	chr4	114423677	114423677	rs35408611	31607149	Ramirez J	2019-10-14	Circ Arrhythm Electrophysiol	Cardiovascular Predictive Value and Genetic Basis of Ventricular Repolarization Dynamics.	T wave morphology restitution during recovery from exercise (MTAG)	51,574 European ancestry individuals	NA	4q26	CAMK2D	rs35408611-C	0.738	2E-7		0.036	[0.022-0.05] unit decrease	NR [~ 9000000] (imputed)	N
1457	chr4	114423677	114423677	rs35408611	31607149	Ramirez J	2019-10-14	Circ Arrhythm Electrophysiol	Cardiovascular Predictive Value and Genetic Basis of Ventricular Repolarization Dynamics.	T wave morphology restitution during recovery from exercise	51,574 European ancestry individuals	NA	4q26	CAMK2D	rs35408611-C	0.738	3E-8		0.031	[0.019-0.043] unit decrease	NR [~ 9000000] (imputed)	N
1458	chr4	114425933	114425934	rs4834347	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	4q26	CAMK2D	rs4834347-A	0.2494	2E-25		0.7834	[0.64-0.93] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1458	chr4	114428713	114428714	rs55754224	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	4q26	CAMK2D	rs55754224-T	0.26	2E-9	(EA)	1.05	[1.03-1.07]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1458	chr4	114428713	114428714	rs55754224	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	4q26	CAMK2D	rs55754224-T	0.25	9E-9		1.05	[1.03-1.07]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1458	chr4	114439893	114439894	rs7700110	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	4q26	CAMK2D	rs7700110-A	0.2566	4E-9		1.0244952		Affymetrix [11880941] (imputed)	N
1458	chr4	114444760	114444761	rs6533694	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	4q26	CAMK2D	rs6533694-T	0.754607	8E-21	(110 ms)	0.0582842	[0.046-0.071] unit increase	Affymetrix [10000000] (imputed)	N
1458	chr4	114444760	114444761	rs6533694	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	4q26	CAMK2D	rs6533694-T	0.754607	7E-9	(376 ms)	0.0379802	[0.025-0.051] unit decrease	Affymetrix [10000000] (imputed)	N
1458	chr4	114444760	114444761	rs6533694	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	4q26	CAMK2D	rs6533694-T	0.754607	2E-9	(386 ms)	0.0395292	[0.027-0.052] unit decrease	Affymetrix [10000000] (imputed)	N
1458	chr4	114444760	114444761	rs6533694	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	4q26	CAMK2D	rs6533694-T	0.754607	2E-18	(84 ms)	0.0547057	[0.042-0.067] unit increase	Affymetrix [10000000] (imputed)	N
1458	chr4	114444760	114444761	rs6533694	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	4q26	CAMK2D	rs6533694-T	0.754607	2E-12	(152 ms)	0.0450375	[0.032-0.058] unit increase	Affymetrix [10000000] (imputed)	N
1458	chr4	114444760	114444761	rs6533694	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	4q26	CAMK2D	rs6533694-T	0.754607	1E-9	(384 ms)	0.0398839	[0.027-0.053] unit decrease	Affymetrix [10000000] (imputed)	N
1458	chr4	114444760	114444761	rs6533694	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	4q26	CAMK2D	rs6533694-T	0.754607	1E-24	(112 ms)	0.0641708	[0.052-0.077] unit increase	Affymetrix [10000000] (imputed)	N
1458	chr4	114448655	114448656	rs6829664	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	4q26	CAMK2D	rs6829664-G	0.262	2E-13		1.06	[1.04-1.07]	Illumina [34740186] (imputed)	N
1458	chr4	114456505	114456506	rs35132791	32386560	Ramirez J	2020-04-29	Am J Hum Genet	Common Genetic Variants Modulate the Electrocardiographic Tpeak-to-Tend Interval.	TPE interval (resting)	71,338 European ancestry individuals	NA	4q26	CAMK2D	rs35132791-C	0.742	3E-10		0.037	[0.025-0.049] unit decrease	Affymetrix [~ 9000000] (imputed)	N
1458	chr4	114482071	114482072	rs78855440	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		CAMK2D	rs78855440-?	NR	8E-9		2.31308	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1458	chr4	114546703	114546704	rs10023113	25145502	Tang S	2014-08-22	Ann Surg Oncol	Genome-wide association study of survival in early-stage non-small cell lung cancer.	Non-small cell lung cancer (survival)	354 Han Chinese ancestry cases	327 Han Chinese ancestry cases	4q26	CAMK2D	rs10023113-A	NR	3E-7		2.3	[1.67-3.17]	Affymetrix [589102]	N
1458	chr4	114556074	114556075	rs2189364	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	4q26	CAMK2D	rs2189364-A	0.6418	5E-7		0.0465	[0.028-0.065] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1458	chr4	114556430	114556431	rs80195545	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic bronchitis	271 East Asian ancestry cases, 161,803 East Asian ancestry controls	NA	4q26		rs80195545-G	0.002599336	2E-8		9.082302	[5.9-12.27] unit increase	Illumina [13427039] (imputed)	N
1458	chr4	114556430	114556431	rs80195545	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic bronchitis	10,159 European ancestry cases, 440,263 European ancestry controls, 271 East Asian ancestry cases, 161,803 East Asian ancestry controls	NA	4q26		rs80195545-G	NR	2E-8		9.0823	[5.9-12.27] unit increase	Affymetrix, Illumina [25840074] (imputed)	N
1459	chr4	114647292	114647293	rs146513397	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	4q26	Intergenic	rs146513397-?		1E-6		1.16	[1.09-1.23]	Illumina [7645193] (imputed)	N
1459	chr4	114647292	114647293	rs146513397	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	4q26	Intergenic	rs146513397-?		7E-7		3.95	[2.30-6.79]	Illumina [7645193] (imputed)	N
1459	chr4	114683843	114683844	rs6858698	24292274	Speedy HE	2013-12-01	Nat Genet	A genome-wide association study identifies multiple susceptibility loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	1,739 European ancestry cases, 5,199 European ancestry controls	1,144 European ancestry cases, 3,151 European ancestry controls	4q26	CAMK2D	rs6858698-C		3E-9		1.31	[1.20-1.44]	Illumina [450000] (imputed)	N
1460	chr4	114698695	114698696	rs1476569	28165464	Law PJ	2017-02-06	Nat Commun	Genome-wide association analysis implicates dysregulation of immunity genes in chronic lymphocytic leukaemia.	Chronic lymphocytic leukemia	4,478 European ancestry cases and 13,213 European ancestry controls.	1,722 European ancestry cases and 4,385 European ancestry controls.	4q26	CAMK2D	rs1476569-G	NR	6E-10		1.18	[1.12-1.25]	Affymetrix, Illumina [> 10000000] (imputed)	N
1460	chr4	114745580	114745581	rs7669672	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	4q26		rs7669672-?	NR	8E-11				NR [~ 8900000] (imputed)	N
1461	chr4	114855971	114855972	rs11729278	30718321	Sanchez-Roige S	2019-02-04	J Neurosci	Genome-wide association studies of impulsive personality traits (BIS-11 and UPPSP) and drug experimentation in up to 22,861 adult research participants identify loci in the CACNA1I and CADM2 genes.	Impulsivity (motor)	21,806 European ancestry individuals	NA	4q26	ARSJ	rs11729278-T	0.2628	9E-7		0.053	[0.032-0.074] unit increase	Illumina [11434023] (imputed)	N
1461	chr4	114861299	114861300	rs4460079	24165912	He J	2013-10-28	Circ Cardiovasc Genet	Genome-wide association study identifies 8 novel loci associated with blood pressure responses to interventions in Han Chinese.	Blood pressure measurement (high sodium and potassium intervention)	1,836 Han Chinese ancestry individuals	654 Han Chinese ancestry individuals	4q26	ARSJ	rs4460079-C	0.21	3E-6	(MAP, during intervention)	1.58	[0.91-2.25] mmHg decrease	Affymetrix [2216774] (imputed)	N
1461	chr4	114861299	114861300	rs4460079	24165912	He J	2013-10-28	Circ Cardiovasc Genet	Genome-wide association study identifies 8 novel loci associated with blood pressure responses to interventions in Han Chinese.	Blood pressure measurement (high sodium and potassium intervention)	1,836 Han Chinese ancestry individuals	654 Han Chinese ancestry individuals	4q26	ARSJ	rs4460079-C	0.21	2E-7	(SBP, during intervention)	2.33	[1.45-3.21] mmHg decrease	Affymetrix [2216774] (imputed)	N
1461	chr4	114889373	114889374	rs7677674	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	4q26		rs7677674-?	NR	1E-15				NR [~ 8900000] (imputed)	N
1461	chr4	114896903	114896904	rs6827199	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	4q26		rs6827199-A	NR	3E-14		0.0109	[0.0082-0.0136] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1461	chr4	114913744	114913745	rs142157655	34162658	Quinn MC	2021-06-23	Cancer Epidemiol Biomarkers Prev	Identification of a locus near ULK1 associated with progression-free survival in ovarian cancer.	Progression free survival in epithelial ovarian cancer treated with carboplatin and paclitaxel	2,352 European ancestry individuals	NA	4q26	NR	rs142157655-CA		9E-6		1.5034	[0.84-2.17] unit decrease	Illumina [12764477] (imputed)	N
1462	chr4	115027838	115027839	rs115982993	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	4q26	NR	rs115982993-?	NR	3E-6		17.098	NR unit increase	Affymetrix [at least 600000] (imputed)	N
1463	chr4	115139111	115139112	rs34757013	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	4q26		rs34757013-A	NR	1E-8		0.0095	[0.0062-0.0128] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1463	chr4	115190821	115190822	rs28728256	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	4q26		rs28728256-T	NR	3E-8		0.0146	[0.0095-0.0197] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1464	chr4	115268169	115268170	rs2883217	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	4q26	NR	rs2883217-?	NR	9E-37				Affymetrix [NR]	N
1465	chr4	115379444	115379445	rs2388993	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	4q26	NR	rs2388993-G	0.5869	4E-9		0.001311	[0.00086-0.00176] unit decrease	Affymetrix [NR] (imputed)	N
1465	chr4	115381918	115381919	rs4834412	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Urolithiasis	6,223 European ancestry cases, 482,123 European ancestry controls, 11,699 East Asian ancestry cases, 167,027 East Asian ancestry controls	NA	4q26		rs4834412-A	NR	1E-9		0.0701	[0.047-0.093] unit decrease	Affymetrix, Illumina [25845211] (imputed)	N
1465	chr4	115390970	115390971	rs62309863	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	4q26		rs62309863-T	NR	1E-12		0.0159	[0.012-0.02] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
1465	chr4	115398199	115398200	rs1870653	26242244	Ma Y	2015-08-05	Sci Rep	Association of chromosome 5q21.3 polymorphisms with the exploratory eye movement dysfunction in schizophrenia.	Exploratory eye movement dysfunction in schizophrenia (number of eye fixations)	128 Han Chinese ancestry cases	NA	4q26	NR	rs1870653-?	NR	8E-6		12.67	[7.34-18] unit decrease	Illumina [498648]	N
1465	chr4	115400323	115400324	rs72676244	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs72676244-T	NR	2E-10		0.1047	[0.072-0.137] unit decrease	Illumina [6720657] (imputed)	N
1465	chr4	115400738	115400739	rs62309866	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs62309866-A	NR	1E-10		0.0464	[0.032-0.061] unit increase	Illumina [6720657] (imputed)	N
1465	chr4	115400927	115400928	rs7685549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs7685549-C	NR	4E-10		0.1009	[0.069-0.132] unit decrease	Illumina [6720657] (imputed)	N
1465	chr4	115401512	115401513	rs7686774	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs7686774-A	NR	4E-10		0.0843	[0.058-0.111] unit decrease	Illumina [6720657] (imputed)	N
1465	chr4	115401572	115401573	rs7687413	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs7687413-G	NR	4E-10		0.1668	[0.11-0.22] unit decrease	Illumina [6720657] (imputed)	N
1465	chr4	115401859	115401860	rs7665675	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs7665675-T	NR	3E-10		0.0575	[0.039-0.076] unit increase	Illumina [6720657] (imputed)	N
1465	chr4	115401947	115401948	rs7692571	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs7692571-G	NR	4E-10		0.0574	[0.039-0.075] unit increase	Illumina [6720657] (imputed)	N
1465	chr4	115402597	115402598	rs62309868	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs62309868-T	NR	1E-10		0.0337	[0.024-0.044] unit increase	Illumina [6720657] (imputed)	N
1465	chr4	115403277	115403278	rs11724670	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs11724670-C	NR	6E-28		0.065	[0.053-0.077] unit increase	Illumina [6720657] (imputed)	N
1465	chr4	115403330	115403331	rs11724674	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs11724674-A	NR	6E-28		0.0834	[0.069-0.098] unit increase	Illumina [6720657] (imputed)	N
1465	chr4	115404275	115404276	rs10002657	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs10002657-G	NR	6E-41		0.1065	[0.091-0.122] unit decrease	Illumina [6720657] (imputed)	N
1465	chr4	115404962	115404963	rs6849064	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs6849064-A	NR	2E-10		0.1051	[0.073-0.138] unit decrease	Illumina [6720657] (imputed)	N
1465	chr4	115405344	115405345	rs1460770	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs1460770-A	NR	3E-24		0.0801	[0.065-0.096] unit decrease	Illumina [6720657] (imputed)	N
1465	chr4	115405449	115405450	rs6850121	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs6850121-G	NR	2E-10		0.0735	[0.051-0.096] unit increase	Illumina [6720657] (imputed)	N
1465	chr4	115405747	115405748	rs28564476	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs28564476-C	NR	2E-12		0.0477	[0.034-0.061] unit increase	Illumina [6720657] (imputed)	N
1465	chr4	115406517	115406518	rs922199	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs922199-C	NR	6E-10		0.0356	[0.024-0.047] unit decrease	Illumina [6720657] (imputed)	N
1465	chr4	115407049	115407050	rs1551742	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs1551742-T	NR	2E-23		0.1581	[0.13-0.19] unit decrease	Illumina [6720657] (imputed)	N
1465	chr4	115407329	115407330	rs10516602	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs10516602-G	NR	2E-36		0.1569	[0.13-0.18] unit decrease	Illumina [6720657] (imputed)	N
1465	chr4	115407910	115407911	rs1460771	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs1460771-A	NR	3E-24		0.1215	[0.098-0.145] unit increase	Illumina [6720657] (imputed)	N
1465	chr4	115408183	115408184	rs1460772	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs1460772-T	NR	3E-24		0.0785	[0.063-0.094] unit increase	Illumina [6720657] (imputed)	N
1465	chr4	115408799	115408800	rs10028232	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs10028232-A	NR	8E-41		0.11	[0.094-0.126] unit decrease	Illumina [6720657] (imputed)	N
1465	chr4	115408891	115408892	rs7671026	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs7671026-C	NR	3E-10		0.0789	[0.054-0.104] unit decrease	Illumina [6720657] (imputed)	N
1465	chr4	115409341	115409342	rs12641633	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs12641633-C	NR	1E-26		0.0957	[0.078-0.113] unit decrease	Illumina [6720657] (imputed)	N
1465	chr4	115409588	115409589	rs10031142	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs10031142-A	NR	8E-41		0.0779	[0.067-0.089] unit decrease	Illumina [6720657] (imputed)	N
1465	chr4	115410255	115410256	rs17678686	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs17678686-T	NR	6E-14		0.0836	[0.062-0.105] unit decrease	Illumina [6720657] (imputed)	N
1465	chr4	115410907	115410908	rs28766989	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs28766989-G	NR	2E-12		0.073	[0.053-0.093] unit decrease	Illumina [6720657] (imputed)	N
1465	chr4	115411176	115411177	rs13105730	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs13105730-G	NR	3E-25		0.1327	[0.11-0.16] unit increase	Illumina [6720657] (imputed)	N
1465	chr4	115411529	115411530	rs11722125	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs11722125-G	NR	6E-28		0.0774	[0.063-0.091] unit decrease	Illumina [6720657] (imputed)	N
1465	chr4	115411732	115411733	rs11722201	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs11722201-C	NR	6E-28		0.0651	[0.054-0.077] unit increase	Illumina [6720657] (imputed)	N
1465	chr4	115411857	115411858	rs1599316	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs1599316-T	NR	1E-22		0.0984	[0.079-0.118] unit decrease	Illumina [6720657] (imputed)	N
1465	chr4	115412026	115412027	rs1585446	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs1585446-G	NR	1E-22		0.0592	[0.047-0.071] unit increase	Illumina [6720657] (imputed)	N
1465	chr4	115412046	115412047	rs4833457	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs4833457-G	NR	2E-11		0.0865	[0.061-0.112] unit decrease	Illumina [6720657] (imputed)	N
1465	chr4	115412067	115412068	rs1585447	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs1585447-T	NR	1E-22		0.0498	[0.04-0.06] unit increase	Illumina [6720657] (imputed)	N
1465	chr4	115412205	115412206	rs1585448	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs1585448-C	NR	1E-22		0.0597	[0.048-0.072] unit increase	Illumina [6720657] (imputed)	N
1465	chr4	115412780	115412781	rs1870655	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs1870655-G	NR	1E-13		0.1645	[0.12-0.21] unit decrease	Illumina [6720657] (imputed)	N
1465	chr4	115413057	115413058	rs2219591	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs2219591-C	NR	3E-13		0.0564	[0.041-0.071] unit decrease	Illumina [6720657] (imputed)	N
1465	chr4	115413401	115413402	rs2199310	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs2199310-G	NR	3E-13		0.0768	[0.056-0.097] unit increase	Illumina [6720657] (imputed)	N
1465	chr4	115413443	115413444	rs2199311	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs2199311-G	NR	3E-13		0.0423	[0.031-0.054] unit decrease	Illumina [6720657] (imputed)	N
1465	chr4	115413612	115413613	rs7698391	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs7698391-G	NR	4E-10		0.0639	[0.044-0.084] unit increase	Illumina [6720657] (imputed)	N
1465	chr4	115413802	115413803	rs7698790	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs7698790-T	NR	4E-10		0.0426	[0.029-0.056] unit increase	Illumina [6720657] (imputed)	N
1465	chr4	115414153	115414154	rs13102706	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs13102706-A	NR	2E-25		0.1258	[0.1-0.15] unit decrease	Illumina [6720657] (imputed)	N
1465	chr4	115414204	115414205	rs13102910	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs13102910-T	NR	2E-25		0.1384	[0.11-0.16] unit decrease	Illumina [6720657] (imputed)	N
1465	chr4	115414214	115414215	rs13127839	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs13127839-G	NR	4E-25		0.0721	[0.058-0.086] unit increase	Illumina [6720657] (imputed)	N
1465	chr4	115414343	115414344	rs13103158	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs13103158-G	NR	2E-25		0.0773	[0.063-0.092] unit decrease	Illumina [6720657] (imputed)	N
1465	chr4	115414372	115414373	rs13127680	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs13127680-T	NR	4E-25		0.0839	[0.068-0.1] unit increase	Illumina [6720657] (imputed)	N
1465	chr4	115414400	115414401	rs4834415	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs4834415-G	NR	2E-11		0.1731	[0.12-0.22] unit decrease	Illumina [6720657] (imputed)	N
1465	chr4	115414726	115414727	rs4833458	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs4833458-A	NR	2E-11		0.0535	[0.038-0.069] unit increase	Illumina [6720657] (imputed)	N
1465	chr4	115414889	115414890	rs4833459	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs4833459-T	NR	2E-11		0.0709	[0.05-0.092] unit increase	Illumina [6720657] (imputed)	N
1465	chr4	115414985	115414986	rs4834416	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs4834416-C	NR	2E-11		0.0472	[0.033-0.061] unit increase	Illumina [6720657] (imputed)	N
1465	chr4	115415031	115415032	rs12501292	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs12501292-T	NR	8E-27		0.0713	[0.058-0.084] unit decrease	Illumina [6720657] (imputed)	N
1465	chr4	115415128	115415129	rs12512563	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs12512563-A	NR	1E-26		0.0882	[0.072-0.104] unit decrease	Illumina [6720657] (imputed)	N
1465	chr4	115415130	115415131	rs12504927	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs12504927-G	NR	9E-27		0.0731	[0.06-0.086] unit increase	Illumina [6720657] (imputed)	N
1465	chr4	115415149	115415150	rs13147121	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs13147121-G	NR	5E-25		0.06	[0.049-0.071] unit increase	Illumina [6720657] (imputed)	N
1465	chr4	115415206	115415207	rs13147488	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs13147488-G	NR	5E-25		0.0676	[0.055-0.08] unit decrease	Illumina [6720657] (imputed)	N
1465	chr4	115415359	115415360	rs12711027	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs12711027-G	NR	4E-26		0.1179	[0.096-0.14] unit decrease	Illumina [6720657] (imputed)	N
1465	chr4	115415624	115415625	rs13148430	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs13148430-G	NR	6E-25		0.0759	[0.061-0.09] unit decrease	Illumina [6720657] (imputed)	N
1465	chr4	115415909	115415910	rs6839599	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs6839599-C	NR	2E-10		0.0602	[0.042-0.079] unit increase	Illumina [6720657] (imputed)	N
1465	chr4	115416233	115416234	rs6840798	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs6840798-G	NR	2E-10		0.0554	[0.038-0.072] unit increase	Illumina [6720657] (imputed)	N
1465	chr4	115416253	115416254	rs6817762	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs6817762-G	NR	2E-10		0.1051	[0.073-0.138] unit decrease	Illumina [6720657] (imputed)	N
1465	chr4	115416569	115416570	rs13103833	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs13103833-G	NR	2E-25		0.085	[0.069-0.101] unit increase	Illumina [6720657] (imputed)	N
1465	chr4	115416702	115416703	rs13104656	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs13104656-A	NR	2E-25		0.0765	[0.062-0.091] unit decrease	Illumina [6720657] (imputed)	N
1465	chr4	115416745	115416746	rs13104685	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs13104685-A	NR	2E-25		0.0788	[0.064-0.094] unit increase	Illumina [6720657] (imputed)	N
1465	chr4	115416755	115416756	rs13104693	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs13104693-A	NR	3E-25		0.0991	[0.08-0.118] unit increase	Illumina [6720657] (imputed)	N
1465	chr4	115416861	115416862	rs7662125	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs7662125-G	NR	3E-10		0.0794	[0.055-0.104] unit increase	Illumina [6720657] (imputed)	N
1465	chr4	115416925	115416926	rs7689158	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs7689158-A	NR	4E-10		0.0468	[0.032-0.061] unit decrease	Illumina [6720657] (imputed)	N
1465	chr4	115416958	115416959	rs2054303	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs2054303-T	NR	1E-13		0.048	[0.035-0.061] unit decrease	Illumina [6720657] (imputed)	N
1465	chr4	115417057	115417058	rs2054304	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs2054304-T	NR	1E-13		0.1296	[0.095-0.164] unit increase	Illumina [6720657] (imputed)	N
1465	chr4	115417330	115417331	rs2054305	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs2054305-C	NR	1E-13		0.1772	[0.13-0.22] unit decrease	Illumina [6720657] (imputed)	N
1465	chr4	115417359	115417360	rs2054306	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs2054306-A	NR	1E-13		0.0885	[0.065-0.112] unit increase	Illumina [6720657] (imputed)	N
1465	chr4	115417682	115417683	rs11931563	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs11931563-C	NR	3E-27		0.083	[0.068-0.098] unit increase	Illumina [6720657] (imputed)	N
1465	chr4	115417685	115417686	rs2035059	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs2035059-G	NR	1E-13		0.1245	[0.092-0.157] unit increase	Illumina [6720657] (imputed)	N
1465	chr4	115420349	115420350	rs12502750	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs12502750-G	NR	8E-27		0.0705	[0.058-0.083] unit decrease	Illumina [6720657] (imputed)	N
1465	chr4	115422386	115422387	rs7654273	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs7654273-G	NR	3E-10		0.0575	[0.039-0.076] unit increase	Illumina [6720657] (imputed)	N
1465	chr4	115422948	115422949	rs6839138	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs6839138-G	NR	2E-10		0.1051	[0.073-0.138] unit decrease	Illumina [6720657] (imputed)	N
1465	chr4	115423196	115423197	rs6839694	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs6839694-A	NR	2E-10		0.077	[0.053-0.101] unit decrease	Illumina [6720657] (imputed)	N
1465	chr4	115424165	115424166	rs1599317	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs1599317-T	NR	1E-22		0.0665	[0.053-0.08] unit increase	Illumina [6720657] (imputed)	N
1465	chr4	115427622	115427623	rs7674990	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs7674990-G	NR	3E-10		0.0608	[0.042-0.08] unit decrease	Illumina [6720657] (imputed)	N
1465	chr4	115429127	115429128	rs10015704	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs10015704-G	NR	6E-41		0.1065	[0.091-0.122] unit decrease	Illumina [6720657] (imputed)	N
1465	chr4	115429538	115429539	rs7665770	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs7665770-C	NR	3E-10		0.0597	[0.041-0.078] unit decrease	Illumina [6720657] (imputed)	N
1465	chr4	115430925	115430926	rs36096691	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs36096691-T	NR	2E-12		0.0489	[0.035-0.063] unit decrease	Illumina [6720657] (imputed)	N
1465	chr4	115431676	115431677	rs993460	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs993460-C	NR	8E-10		0.0642	[0.044-0.085] unit increase	Illumina [6720657] (imputed)	N
1465	chr4	115432825	115432826	rs7686100	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs7686100-C	NR	4E-10		0.0624	[0.043-0.082] unit decrease	Illumina [6720657] (imputed)	N
1465	chr4	115432940	115432941	rs4409025	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs4409025-A	NR	1E-11		0.0556	[0.04-0.072] unit increase	Illumina [6720657] (imputed)	N
1465	chr4	115432942	115432943	rs4409026	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs4409026-A	NR	1E-11		0.0837	[0.06-0.108] unit increase	Illumina [6720657] (imputed)	N
1465	chr4	115433100	115433101	rs4295329	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs4295329-C	NR	1E-11		0.0659	[0.047-0.085] unit decrease	Illumina [6720657] (imputed)	N
1465	chr4	115433140	115433141	rs4409027	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs4409027-A	NR	1E-11		0.0837	[0.06-0.108] unit increase	Illumina [6720657] (imputed)	N
1465	chr4	115433245	115433246	rs4413472	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs4413472-A	NR	1E-11		0.0716	[0.051-0.092] unit decrease	Illumina [6720657] (imputed)	N
1465	chr4	115433379	115433380	rs11936113	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs11936113-A	NR	3E-27		0.1053	[0.086-0.124] unit decrease	Illumina [6720657] (imputed)	N
1465	chr4	115433546	115433547	rs11936150	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs11936150-G	NR	3E-27		0.105	[0.086-0.124] unit decrease	Illumina [6720657] (imputed)	N
1465	chr4	115433964	115433965	rs28361366	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs28361366-C	NR	1E-12		0.0762	[0.055-0.097] unit increase	Illumina [6720657] (imputed)	N
1465	chr4	115433976	115433977	rs28656197	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs28656197-A	NR	2E-12		0.0427	[0.031-0.055] unit decrease	Illumina [6720657] (imputed)	N
1465	chr4	115434477	115434478	rs2199312	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs2199312-A	NR	3E-13		0.0862	[0.063-0.109] unit increase	Illumina [6720657] (imputed)	N
1465	chr4	115434710	115434711	rs2199314	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs2199314-T	NR	3E-13		0.0592	[0.043-0.075] unit increase	Illumina [6720657] (imputed)	N
1465	chr4	115435339	115435340	rs28736894	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs28736894-A	NR	2E-12		0.1214	[0.088-0.155] unit increase	Illumina [6720657] (imputed)	N
1465	chr4	115435360	115435361	rs17622270	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs17622270-A	NR	6E-14		0.0676	[0.05-0.085] unit increase	Illumina [6720657] (imputed)	N
1465	chr4	115435661	115435662	rs958771	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs958771-G	NR	7E-10		0.0745	[0.051-0.098] unit decrease	Illumina [6720657] (imputed)	N
1465	chr4	115436345	115436346	rs10021252	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs10021252-G	NR	7E-41		0.1068	[0.091-0.122] unit decrease	Illumina [6720657] (imputed)	N
1465	chr4	115436654	115436655	rs66806558	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs66806558-T	NR	2E-10		0.1052	[0.073-0.138] unit decrease	Illumina [6720657] (imputed)	N
1465	chr4	115437616	115437617	rs75946304	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs75946304-G	NR	3E-10		0.0854	[0.059-0.112] unit decrease	Illumina [6720657] (imputed)	N
1465	chr4	115438677	115438678	rs66482879	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs66482879-C	NR	2E-10		0.1053	[0.073-0.138] unit decrease	Illumina [6720657] (imputed)	N
1465	chr4	115438805	115438806	rs28657376	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs28657376-C	NR	2E-12		0.0766	[0.055-0.098] unit increase	Illumina [6720657] (imputed)	N
1465	chr4	115439265	115439266	rs10857029	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs10857029-T	NR	1E-32		0.0892	[0.074-0.104] unit increase	Illumina [6720657] (imputed)	N
1465	chr4	115440173	115440174	rs35913849	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs35913849-G	NR	2E-12		0.0397	[0.029-0.051] unit decrease	Illumina [6720657] (imputed)	N
1465	chr4	115440212	115440213	rs13149823	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs13149823-A	NR	6E-25		0.0759	[0.061-0.09] unit decrease	Illumina [6720657] (imputed)	N
1465	chr4	115440366	115440367	rs34740514	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs34740514-T	NR	2E-12		0.0398	[0.029-0.051] unit decrease	Illumina [6720657] (imputed)	N
1465	chr4	115440943	115440944	rs7684322	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs7684322-C	NR	4E-10		0.0785	[0.054-0.103] unit decrease	Illumina [6720657] (imputed)	N
1465	chr4	115442020	115442021	rs116635794	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs116635794-G	NR	1E-28		0.0684	[0.056-0.081] unit increase	Illumina [6720657] (imputed)	N
1465	chr4	115443242	115443243	rs12108520	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs12108520-C	NR	4E-27		0.112	[0.092-0.132] unit decrease	Illumina [6720657] (imputed)	N
1465	chr4	115443302	115443303	rs12108281	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs12108281-C	NR	4E-27		0.0765	[0.063-0.09] unit decrease	Illumina [6720657] (imputed)	N
1465	chr4	115443587	115443588	rs62309917	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs62309917-T	NR	1E-10		0.0484	[0.034-0.063] unit increase	Illumina [6720657] (imputed)	N
1465	chr4	115444069	115444070	rs7682188	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs7682188-T	NR	3E-10		0.0768	[0.053-0.101] unit increase	Illumina [6720657] (imputed)	N
1465	chr4	115444721	115444722	rs7658756	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs7658756-C	NR	3E-10		0.0629	[0.043-0.082] unit decrease	Illumina [6720657] (imputed)	N
1465	chr4	115446765	115446766	rs57623571	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs57623571-A	NR	4E-11		0.0603	[0.042-0.078] unit increase	Illumina [6720657] (imputed)	N
1465	chr4	115447177	115447178	rs11931321	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs11931321-T	NR	3E-27		0.1222	[0.1-0.14] unit increase	Illumina [6720657] (imputed)	N
1465	chr4	115447913	115447914	rs13117126	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs13117126-C	NR	3E-25		0.0912	[0.074-0.108] unit decrease	Illumina [6720657] (imputed)	N
1465	chr4	115448845	115448846	rs10857031	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs10857031-C	NR	2E-32		0.0908	[0.076-0.106] unit increase	Illumina [6720657] (imputed)	N
1465	chr4	115448986	115448987	rs10857032	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs10857032-T	NR	2E-32		0.1743	[0.15-0.2] unit decrease	Illumina [6720657] (imputed)	N
1465	chr4	115449109	115449110	rs12505597	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs12505597-C	NR	9E-27		0.1252	[0.1-0.15] unit decrease	Illumina [6720657] (imputed)	N
1465	chr4	115449145	115449146	rs11098253	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs11098253-A	NR	2E-31		0.1193	[0.099-0.139] unit decrease	Illumina [6720657] (imputed)	N
1465	chr4	115449289	115449290	rs7655989	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs7655989-A	NR	3E-10		0.0284	[0.02-0.037] unit increase	Illumina [6720657] (imputed)	N
1465	chr4	115449822	115449823	rs6814022	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs6814022-G	NR	2E-10		0.1051	[0.073-0.138] unit decrease	Illumina [6720657] (imputed)	N
1465	chr4	115450049	115450050	rs1460779	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs1460779-G	NR	3E-24		0.067	[0.054-0.08] unit increase	Illumina [6720657] (imputed)	N
1465	chr4	115450463	115450464	rs1841435	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs1841435-T	NR	1E-13		0.0747	[0.055-0.094] unit decrease	Illumina [6720657] (imputed)	N
1465	chr4	115450575	115450576	rs1841434	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs1841434-A	NR	1E-13		0.0733	[0.054-0.093] unit decrease	Illumina [6720657] (imputed)	N
1465	chr4	115450921	115450922	rs1824490	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs1824490-C	NR	1E-13		0.0651	[0.048-0.082] unit increase	Illumina [6720657] (imputed)	N
1465	chr4	115450931	115450932	rs1824489	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs1824489-A	NR	1E-13		0.178	[0.13-0.22] unit decrease	Illumina [6720657] (imputed)	N
1465	chr4	115451419	115451420	rs7669767	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs7669767-G	NR	3E-10		0.0789	[0.054-0.104] unit decrease	Illumina [6720657] (imputed)	N
1465	chr4	115451607	115451608	rs2100782	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs2100782-C	NR	3E-13		0.0404	[0.03-0.051] unit increase	Illumina [6720657] (imputed)	N
1465	chr4	115452216	115452217	rs12508960	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs12508960-T	NR	1E-26		0.1005	[0.082-0.119] unit decrease	Illumina [6720657] (imputed)	N
1465	chr4	115452455	115452456	rs11098254	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs11098254-T	NR	2E-31		0.1193	[0.099-0.139] unit decrease	Illumina [6720657] (imputed)	N
1465	chr4	115452548	115452549	rs11098255	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs11098255-T	NR	3E-31		0.0941	[0.078-0.11] unit increase	Illumina [6720657] (imputed)	N
1465	chr4	115452737	115452738	rs6834235	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs6834235-C	NR	2E-10		0.1051	[0.073-0.138] unit decrease	Illumina [6720657] (imputed)	N
1465	chr4	115453382	115453383	rs1599320	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs1599320-T	NR	1E-22		0.0754	[0.06-0.09] unit increase	Illumina [6720657] (imputed)	N
1465	chr4	115453593	115453594	rs7683270	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs7683270-T	NR	4E-10		0.094	[0.065-0.123] unit decrease	Illumina [6720657] (imputed)	N
1465	chr4	115453632	115453633	rs13103303	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs13103303-G	NR	2E-25		0.1302	[0.11-0.15] unit increase	Illumina [6720657] (imputed)	N
1465	chr4	115453706	115453707	rs13103327	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs13103327-A	NR	2E-25		0.0614	[0.05-0.073] unit increase	Illumina [6720657] (imputed)	N
1465	chr4	115453775	115453776	rs13103719	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs13103719-T	NR	2E-25		0.058	[0.047-0.069] unit increase	Illumina [6720657] (imputed)	N
1465	chr4	115453796	115453797	rs13104081	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs13104081-G	NR	2E-25		0.0606	[0.049-0.072] unit increase	Illumina [6720657] (imputed)	N
1465	chr4	115453924	115453925	rs13109008	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs13109008-C	NR	3E-25		0.0636	[0.052-0.076] unit increase	Illumina [6720657] (imputed)	N
1465	chr4	115453992	115453993	rs13109803	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs13109803-T	NR	3E-25		0.0623	[0.051-0.074] unit increase	Illumina [6720657] (imputed)	N
1465	chr4	115454458	115454459	rs7440658	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs7440658-T	NR	3E-10		0.0746	[0.051-0.098] unit decrease	Illumina [6720657] (imputed)	N
1465	chr4	115454608	115454609	rs2126028	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs2126028-C	NR	3E-13		0.0535	[0.039-0.068] unit decrease	Illumina [6720657] (imputed)	N
1465	chr4	115454665	115454666	rs2126027	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs2126027-G	NR	3E-13		0.0486	[0.036-0.062] unit increase	Illumina [6720657] (imputed)	N
1465	chr4	115454686	115454687	rs2126026	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs2126026-G	NR	3E-13		0.0764	[0.056-0.097] unit decrease	Illumina [6720657] (imputed)	N
1465	chr4	115456110	115456111	rs12503437	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs12503437-G	NR	8E-27		0.1234	[0.1-0.15] unit decrease	Illumina [6720657] (imputed)	N
1465	chr4	115456151	115456152	rs12503513	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs12503513-G	NR	8E-27		0.0726	[0.059-0.086] unit decrease	Illumina [6720657] (imputed)	N
1465	chr4	115456235	115456236	rs12503481	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs12503481-A	NR	8E-27		0.0796	[0.065-0.094] unit decrease	Illumina [6720657] (imputed)	N
1465	chr4	115456514	115456515	rs7667556	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs7667556-T	NR	3E-10		0.0531	[0.036-0.07] unit decrease	Illumina [6720657] (imputed)	N
1465	chr4	115456521	115456522	rs7668023	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs7668023-G	NR	3E-10		0.0465	[0.032-0.061] unit increase	Illumina [6720657] (imputed)	N
1465	chr4	115457854	115457855	rs17047190	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs17047190-T	NR	3E-22		0.0824	[0.066-0.099] unit decrease	Illumina [6720657] (imputed)	N
1465	chr4	115458167	115458168	rs11938628	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs11938628-T	NR	3E-27		0.0741	[0.061-0.087] unit decrease	Illumina [6720657] (imputed)	N
1465	chr4	115459232	115459233	rs34534063	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs34534063-T	NR	2E-12		0.0417	[0.03-0.053] unit increase	Illumina [6720657] (imputed)	N
1465	chr4	115459267	115459268	rs36078253	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs36078253-C	NR	2E-12		0.0798	[0.057-0.102] unit decrease	Illumina [6720657] (imputed)	N
1465	chr4	115459463	115459464	rs60461745	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs60461745-T	NR	5E-11		0.0824	[0.058-0.107] unit increase	Illumina [6720657] (imputed)	N
1465	chr4	115460024	115460025	rs13114989	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs13114989-T	NR	3E-25		0.0478	[0.039-0.057] unit increase	Illumina [6720657] (imputed)	N
1465	chr4	115461108	115461109	rs79261962	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs79261962-T	NR	4E-10		0.0538	[0.037-0.071] unit decrease	Illumina [6720657] (imputed)	N
1465	chr4	115461157	115461158	rs1460782	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs1460782-C	NR	4E-24		0.0792	[0.064-0.094] unit decrease	Illumina [6720657] (imputed)	N
1465	chr4	115461264	115461265	rs1460783	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs1460783-T	NR	4E-24		0.1034	[0.083-0.123] unit decrease	Illumina [6720657] (imputed)	N
1465	chr4	115462099	115462100	rs77422558	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs77422558-T	NR	4E-10		0.0561	[0.038-0.074] unit increase	Illumina [6720657] (imputed)	N
1465	chr4	115462375	115462376	rs12649041	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs12649041-T	NR	2E-26		0.1194	[0.097-0.141] unit decrease	Illumina [6720657] (imputed)	N
1465	chr4	115463019	115463020	rs13136602	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs13136602-G	NR	5E-25		0.1011	[0.082-0.12] unit decrease	Illumina [6720657] (imputed)	N
1465	chr4	115463102	115463103	rs1460784	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs1460784-A	NR	4E-24		0.0684	[0.055-0.082] unit increase	Illumina [6720657] (imputed)	N
1465	chr4	115463615	115463616	rs12649943	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs12649943-G	NR	2E-26		0.1129	[0.092-0.134] unit decrease	Illumina [6720657] (imputed)	N
1465	chr4	115463692	115463693	rs12649963	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs12649963-C	NR	2E-26		0.1353	[0.11-0.16] unit increase	Illumina [6720657] (imputed)	N
1465	chr4	115465493	115465494	rs17047198	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs17047198-C	NR	3E-22		0.0824	[0.066-0.099] unit decrease	Illumina [6720657] (imputed)	N
1465	chr4	115466100	115466101	rs17047201	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs17047201-C	NR	3E-22		0.0824	[0.066-0.099] unit decrease	Illumina [6720657] (imputed)	N
1465	chr4	115466912	115466913	rs1460785	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs1460785-G	NR	4E-24		0.054	[0.044-0.064] unit increase	Illumina [6720657] (imputed)	N
1465	chr4	115467174	115467175	rs13127912	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs13127912-C	NR	4E-25		0.0905	[0.073-0.108] unit decrease	Illumina [6720657] (imputed)	N
1465	chr4	115467267	115467268	rs10516604	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs10516604-T	NR	2E-36		0.0876	[0.074-0.101] unit decrease	Illumina [6720657] (imputed)	N
1465	chr4	115467383	115467384	rs12648803	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs12648803-C	NR	2E-26		0.0573	[0.047-0.068] unit increase	Illumina [6720657] (imputed)	N
1465	chr4	115467458	115467459	rs10516603	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs10516603-G	NR	2E-36		0.1465	[0.12-0.17] unit decrease	Illumina [6720657] (imputed)	N
1465	chr4	115468486	115468487	rs13135560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs13135560-T	NR	4E-25		0.0773	[0.063-0.092] unit increase	Illumina [6720657] (imputed)	N
1465	chr4	115468775	115468776	rs35235288	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs35235288-G	NR	2E-12		0.0437	[0.032-0.056] unit decrease	Illumina [6720657] (imputed)	N
1465	chr4	115469266	115469267	rs35777558	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs35777558-T	NR	2E-12		0.0477	[0.034-0.061] unit increase	Illumina [6720657] (imputed)	N
1465	chr4	115470025	115470026	rs4834419	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs4834419-G	NR	2E-11		0.2159	[0.15-0.28] unit decrease	Illumina [6720657] (imputed)	N
1465	chr4	115470331	115470332	rs1599323	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs1599323-A	NR	1E-22		0.1276	[0.1-0.15] unit increase	Illumina [6720657] (imputed)	N
1465	chr4	115470435	115470436	rs34685786	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs34685786-T	NR	2E-12		0.0814	[0.059-0.104] unit increase	Illumina [6720657] (imputed)	N
1465	chr4	115470912	115470913	rs13104222	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs13104222-C	NR	2E-25		0.1115	[0.091-0.132] unit decrease	Illumina [6720657] (imputed)	N
1465	chr4	115471350	115471351	rs79776742	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs79776742-T	NR	5E-10		0.0847	[0.058-0.111] unit decrease	Illumina [6720657] (imputed)	N
1465	chr4	115472392	115472393	rs57059575	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs57059575-C	NR	4E-11		0.0809	[0.057-0.105] unit decrease	Illumina [6720657] (imputed)	N
1465	chr4	115472571	115472572	rs79989701	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	4q26		rs79989701-C	NR	3E-11		0.0142	[0.01-0.018] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
1465	chr4	115472826	115472827	rs9995962	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs9995962-C	NR	9E-10		0.0464	[0.032-0.061] unit decrease	Illumina [6720657] (imputed)	N
1465	chr4	115473361	115473362	rs13147106	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs13147106-C	NR	5E-25		0.06	[0.049-0.071] unit increase	Illumina [6720657] (imputed)	N
1465	chr4	115473476	115473477	rs13147485	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs13147485-T	NR	5E-25		0.0873	[0.071-0.104] unit decrease	Illumina [6720657] (imputed)	N
1465	chr4	115473673	115473674	rs13120552	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs13120552-G	NR	3E-25		0.145	[0.12-0.17] unit decrease	Illumina [6720657] (imputed)	N
1465	chr4	115473926	115473927	rs13101831	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs13101831-T	NR	2E-25		0.0684	[0.055-0.081] unit decrease	Illumina [6720657] (imputed)	N
1465	chr4	115474354	115474355	rs6533801	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs6533801-C	NR	1E-10		0.0705	[0.049-0.092] unit decrease	Illumina [6720657] (imputed)	N
1466	chr4	115474579	115474580	rs13127707	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs13127707-A	NR	4E-25		0.0782	[0.064-0.093] unit increase	Illumina [6720657] (imputed)	N
1466	chr4	115474675	115474676	rs13127941	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs13127941-G	NR	4E-25		0.0601	[0.049-0.071] unit increase	Illumina [6720657] (imputed)	N
1466	chr4	115475090	115475091	rs13147198	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs13147198-G	NR	5E-25		0.076	[0.062-0.09] unit increase	Illumina [6720657] (imputed)	N
1466	chr4	115475292	115475293	rs13123226	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs13123226-A	NR	3E-25		0.0762	[0.062-0.091] unit decrease	Illumina [6720657] (imputed)	N
1466	chr4	115475298	115475299	rs13147645	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs13147645-T	NR	6E-25		0.0543	[0.044-0.065] unit decrease	Illumina [6720657] (imputed)	N
1466	chr4	115475652	115475653	rs35594431	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs35594431-C	NR	2E-12		0.042	[0.03-0.054] unit decrease	Illumina [6720657] (imputed)	N
1466	chr4	115475784	115475785	rs34403145	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs34403145-T	NR	2E-12		0.0859	[0.062-0.11] unit decrease	Illumina [6720657] (imputed)	N
1466	chr4	115476381	115476382	rs12643074	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs12643074-C	NR	1E-26		0.0948	[0.077-0.112] unit decrease	Illumina [6720657] (imputed)	N
1466	chr4	115476976	115476977	rs2100783	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs2100783-T	NR	3E-13		0.1532	[0.11-0.19] unit increase	Illumina [6720657] (imputed)	N
1466	chr4	115477738	115477739	rs35252674	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs35252674-T	NR	2E-12		0.0521	[0.038-0.067] unit increase	Illumina [6720657] (imputed)	N
1466	chr4	115478073	115478074	rs28787070	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs28787070-A	NR	2E-12		0.073	[0.053-0.093] unit decrease	Illumina [6720657] (imputed)	N
1466	chr4	115478127	115478128	rs12641516	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs12641516-G	NR	1E-26		0.1193	[0.097-0.141] unit decrease	Illumina [6720657] (imputed)	N
1466	chr4	115478498	115478499	rs28870381	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs28870381-A	NR	2E-12		0.0417	[0.03-0.053] unit decrease	Illumina [6720657] (imputed)	N
1466	chr4	115478969	115478970	rs71606719	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs71606719-A	NR	2E-10		0.1049	[0.072-0.137] unit decrease	Illumina [6720657] (imputed)	N
1466	chr4	115479481	115479482	rs13125495	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs13125495-T	NR	3E-25		0.1958	[0.16-0.23] unit decrease	Illumina [6720657] (imputed)	N
1466	chr4	115481387	115481388	rs12650115	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs12650115-C	NR	2E-26		0.0871	[0.071-0.103] unit decrease	Illumina [6720657] (imputed)	N
1466	chr4	115481753	115481754	rs12644238	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs12644238-G	NR	2E-26		0.0727	[0.059-0.086] unit decrease	Illumina [6720657] (imputed)	N
1466	chr4	115481914	115481915	rs10021731	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs10021731-C	NR	8E-41		0.1064	[0.091-0.122] unit decrease	Illumina [6720657] (imputed)	N
1466	chr4	115481914	115481915	rs10021731	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Optic disc area	20,373 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	7,302 Asian ancestry individuals	4q26	UGT8	rs10021731-C		4E-7		0.02	[0.012-0.028] unit decrease	Affymetrix, Illumina [~ 8000000] (imputed)	N
1466	chr4	115481914	115481915	rs10021731	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Optic disc area	20,373 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	7,302 Asian ancestry individuals	4q26	UGT8	rs10021731-C		2E-8	(EA)	0.025	[0.015-0.035] unit decrease	Affymetrix, Illumina [~ 8000000] (imputed)	N
1466	chr4	115483052	115483053	rs1903365	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs1903365-C	NR	1E-13		0.0481	[0.035-0.061] unit decrease	Illumina [6720657] (imputed)	N
1466	chr4	115484727	115484728	rs13110751	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs13110751-T	NR	3E-25		0.0772	[0.063-0.092] unit decrease	Illumina [6720657] (imputed)	N
1466	chr4	115485028	115485029	rs13105144	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs13105144-A	NR	3E-25		0.0881	[0.071-0.105] unit decrease	Illumina [6720657] (imputed)	N
1466	chr4	115485080	115485081	rs13129837	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs13129837-C	NR	4E-25		0.0748	[0.061-0.089] unit decrease	Illumina [6720657] (imputed)	N
1466	chr4	115485683	115485684	rs11098258	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs11098258-C	NR	3E-31		0.1008	[0.084-0.118] unit decrease	Illumina [6720657] (imputed)	N
1466	chr4	115485730	115485731	rs17047236	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs17047236-G	NR	3E-22		0.0824	[0.066-0.099] unit decrease	Illumina [6720657] (imputed)	N
1466	chr4	115485823	115485824	rs33914856	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs33914856-G	NR	2E-12		0.0399	[0.029-0.051] unit decrease	Illumina [6720657] (imputed)	N
1466	chr4	115487078	115487079	rs1380932	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs1380932-G	NR	2E-24		0.0997	[0.08-0.119] unit decrease	Illumina [6720657] (imputed)	N
1466	chr4	115487609	115487610	rs35733223	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs35733223-T	NR	2E-12		0.1556	[0.11-0.2] unit decrease	Illumina [6720657] (imputed)	N
1466	chr4	115487932	115487933	rs35082726	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs35082726-G	NR	2E-12		0.0564	[0.041-0.072] unit increase	Illumina [6720657] (imputed)	N
1466	chr4	115490025	115490026	rs17047238	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs17047238-C	NR	3E-22		0.0977	[0.078-0.117] unit decrease	Illumina [6720657] (imputed)	N
1466	chr4	115490042	115490043	rs1460786	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs1460786-G	NR	4E-24		0.0665	[0.054-0.079] unit increase	Illumina [6720657] (imputed)	N
1466	chr4	115490456	115490457	rs71606720	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs71606720-T	NR	2E-10		0.1049	[0.072-0.137] unit decrease	Illumina [6720657] (imputed)	N
1466	chr4	115490596	115490597	rs7672145	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs7672145-T	NR	3E-10		0.0909	[0.062-0.119] unit decrease	Illumina [6720657] (imputed)	N
1466	chr4	115490687	115490688	rs112169253	33232274	Mohammadnejad A	2020-11-24	Aging (Albany NY)	Generalized correlation coefficient for genome-wide association analysis of cognitive ability in twins.	Cognitive function (mixed linear model)	278 Chinese ancestry dizygotic twins	NA	4q26	NR	rs112169253-?	NR	5E-6		143.0388	[83.08-203] unit decrease	Illumina [5432814] (imputed)	N
1466	chr4	115491714	115491715	rs17047239	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs17047239-G	NR	3E-22		0.0749	[0.06-0.09] unit decrease	Illumina [6720657] (imputed)	N
1466	chr4	115492687	115492688	rs17047244	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs17047244-G	NR	3E-22		0.0908	[0.072-0.109] unit decrease	Illumina [6720657] (imputed)	N
1466	chr4	115492706	115492707	rs17622401	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs17622401-G	NR	6E-14		0.084	[0.062-0.106] unit decrease	Illumina [6720657] (imputed)	N
1466	chr4	115493031	115493032	rs17047246	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs17047246-A	NR	4E-22		0.1261	[0.1-0.15] unit decrease	Illumina [6720657] (imputed)	N
1466	chr4	115493841	115493842	rs4834421	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs4834421-C	NR	2E-11		0.0571	[0.04-0.074] unit decrease	Illumina [6720657] (imputed)	N
1466	chr4	115494426	115494427	rs13144260	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs13144260-G	NR	5E-25		0.0781	[0.063-0.093] unit increase	Illumina [6720657] (imputed)	N
1466	chr4	115495494	115495495	rs12507591	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs12507591-T	NR	9E-27		0.0715	[0.058-0.085] unit decrease	Illumina [6720657] (imputed)	N
1466	chr4	115496435	115496436	rs34948407	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs34948407-C	NR	2E-12		0.0686	[0.049-0.088] unit decrease	Illumina [6720657] (imputed)	N
1466	chr4	115497089	115497090	rs28734840	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs28734840-C	NR	2E-12		0.0981	[0.071-0.125] unit decrease	Illumina [6720657] (imputed)	N
1466	chr4	115497659	115497660	rs12648883	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs12648883-T	NR	2E-26		0.0497	[0.04-0.059] unit increase	Illumina [6720657] (imputed)	N
1466	chr4	115497735	115497736	rs56149980	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs56149980-C	NR	4E-11		0.0594	[0.042-0.077] unit increase	Illumina [6720657] (imputed)	N
1466	chr4	115498456	115498457	rs71606723	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q26	NR	rs71606723-T	0.21573	5E-17				Affymetrix, Illumina [24653286] (imputed)	N
1466	chr4	115498456	115498457	rs71606723	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q26	NR	rs71606723-T	0.216064	9E-16				Affymetrix, Illumina [24558453] (imputed)	N
1466	chr4	115498456	115498457	rs71606723	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	4q26	UGT8	rs71606723-A	0.7716	4E-13		0.0025	[0.0017-0.0033] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
1466	chr4	115498456	115498457	rs71606723	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	4q26	UGT8	rs71606723-A	0.7608	3E-14		0.0029	[0.0021-0.0037] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
1466	chr4	115498667	115498668	rs12331895	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs12331895-C	NR	4E-27		0.0963	[0.079-0.114] unit decrease	Illumina [6720657] (imputed)	N
1466	chr4	115499616	115499617	rs12650568	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs12650568-C	NR	2E-26		0.0722	[0.059-0.086] unit increase	Illumina [6720657] (imputed)	N
1466	chr4	115499673	115499674	rs12650546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs12650546-A	NR	2E-26		0.0848	[0.069-0.1] unit increase	Illumina [6720657] (imputed)	N
1466	chr4	115500558	115500559	rs12645269	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs12645269-A	NR	2E-26		0.1046	[0.085-0.124] unit decrease	Illumina [6720657] (imputed)	N
1466	chr4	115500731	115500732	rs12642541	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs12642541-T	NR	1E-26		0.115	[0.094-0.136] unit decrease	Illumina [6720657] (imputed)	N
1466	chr4	115501588	115501589	rs57930571	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs57930571-T	NR	4E-11		0.0898	[0.063-0.116] unit decrease	Illumina [6720657] (imputed)	N
1466	chr4	115502043	115502044	rs9884212	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs9884212-T	NR	8E-10		0.0739	[0.05-0.097] unit decrease	Illumina [6720657] (imputed)	N
1466	chr4	115502582	115502583	rs35732213	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs35732213-G	NR	2E-12		0.0521	[0.038-0.067] unit increase	Illumina [6720657] (imputed)	N
1466	chr4	115502675	115502676	rs35936834	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs35936834-G	NR	2E-12		0.0756	[0.054-0.097] unit increase	Illumina [6720657] (imputed)	N
1466	chr4	115503876	115503877	rs6813229	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs6813229-T	NR	2E-10		0.1051	[0.073-0.138] unit decrease	Illumina [6720657] (imputed)	N
1466	chr4	115503961	115503962	rs6813283	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs6813283-G	NR	2E-10		0.1051	[0.073-0.138] unit decrease	Illumina [6720657] (imputed)	N
1466	chr4	115504003	115504004	rs6839189	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs6839189-A	NR	2E-10		0.1051	[0.073-0.138] unit decrease	Illumina [6720657] (imputed)	N
1466	chr4	115504726	115504727	rs34581144	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs34581144-A	NR	2E-12		0.0558	[0.04-0.071] unit increase	Illumina [6720657] (imputed)	N
1466	chr4	115515210	115515211	rs35789595	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs35789595-G	NR	2E-12		0.0773	[0.056-0.099] unit increase	Illumina [6720657] (imputed)	N
1466	chr4	115515655	115515656	rs35578985	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs35578985-C	NR	2E-12		0.0652	[0.047-0.083] unit increase	Illumina [6720657] (imputed)	N
1466	chr4	115515947	115515948	rs34001486	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs34001486-C	NR	2E-12		0.0399	[0.029-0.051] unit increase	Illumina [6720657] (imputed)	N
1466	chr4	115516622	115516623	rs7437576	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs7437576-G	NR	3E-10		0.1046	[0.072-0.137] unit decrease	Illumina [6720657] (imputed)	N
1466	chr4	115517542	115517543	rs7434753	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs7434753-A	NR	3E-10		0.0594	[0.041-0.078] unit increase	Illumina [6720657] (imputed)	N
1466	chr4	115517542	115517543	rs7434753	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	4q26	UGT8	rs7434753-C		1E-9		0.019	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
1466	chr4	115519270	115519271	rs6849357	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	4q26		rs6849357-A	NR	6E-14		0.0183	[0.014-0.023] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
1466	chr4	115519270	115519271	rs6849357	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs6849357-G	NR	2E-10		0.0506	[0.035-0.066] unit decrease	Illumina [6720657] (imputed)	N
1466	chr4	115519270	115519271	rs6849357	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q26	NR	rs6849357-A	0.851583	2E-15				Affymetrix, Illumina [24332387] (imputed)	N
1466	chr4	115519270	115519271	rs6849357	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	4q26	NR	rs6849357-A	0.867467	2E-16		0.022539	[0.017-0.028] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
1466	chr4	115519270	115519271	rs6849357	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	4q26		rs6849357-?	NR	8E-17				NR [~ 8900000] (imputed)	N
1466	chr4	115519349	115519350	rs13112553	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs13112553-T	NR	3E-25		0.0878	[0.071-0.104] unit decrease	Illumina [6720657] (imputed)	N
1466	chr4	115519555	115519556	rs12511581	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs12511581-T	NR	1E-26		0.0956	[0.078-0.113] unit decrease	Illumina [6720657] (imputed)	N
1466	chr4	115519824	115519825	rs11098259	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	4q26		rs11098259-A	NR	6E-12		0.0164	[0.012-0.021] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
1466	chr4	115519824	115519825	rs11098259	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	4q26	UGT8	rs11098259-A	0.870567	1E-15		0.02638374	[0.02-0.033] unit increase	Affymetrix [93095623] (imputed)	N
1466	chr4	115519824	115519825	rs11098259	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	4q26	UGT8	rs11098259-A	0.870571	1E-12		0.023606978	[0.017-0.03] unit increase	Affymetrix [93095623] (imputed)	N
1466	chr4	115519824	115519825	rs11098259	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	4q26	UGT8	rs11098259-A	0.870569	2E-12		0.023308488	[0.017-0.03] unit increase	Affymetrix [93095623] (imputed)	N
1466	chr4	115519825	115519826	rs11098260	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs11098260-C	NR	3E-31		0.0939	[0.078-0.11] unit decrease	Illumina [6720657] (imputed)	N
1466	chr4	115519839	115519840	rs12499938	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	4q26		rs12499938-T	NR	8E-27		0.1205	[0.099-0.142] unit decrease	Illumina [6720657] (imputed)	N
1466	chr4	115519849	115519849	rs771935377	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	4q26	NR	rs771935377-D	0.869571	1E-17		0.025727	[0.02-0.032] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
1466	chr4	115538141	115538142	rs35182026	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	4q26	NR	rs35182026-T	0.181769	2E-18		0.020983	[0.016-0.026] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
1466	chr4	115569029	115569030	rs6841433	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	4q26	UGT8	rs6841433-G		3E-9		0.02	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
1466	chr4	115569029	115569030	rs6841433	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	4q26	UGT8	rs6841433-G	0.1822	1E-9		0.02794617	[0.019-0.037] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1466	chr4	115595397	115595413	rs377128920	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body fat mass	3,399 whole genome sequenced individuals, 11,802 European ancestry individuals	10,670 European ancestry individuals	4q26	UGT8	rs377128920-T	0.032	1E-7		0.1835	[0.12-0.25] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1467	chr4	115665874	115665875	rs59618069	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Endometriosis (MTAG)	645 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	4q26	Intergenic	rs59618069-?		8E-7		1.05	[1.03-1.07]	Illumina [7645193] (imputed)	N
1467	chr4	115665874	115665875	rs59618069	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Endometriosis	645 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	4q26	Intergenic	rs59618069-?		6E-7		1.51	[1.28-1.77]	Illumina [7645193] (imputed)	N
1468	chr4	115832374	115832374	rs112584520	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (hospitalized covid vs population)	613 European ancestry cases, 680,416 European ancestry controls, 140 Hispanic or Latin American cases, 94,327 Hispanic or Latin American controls, 49 Black or African American cases, 22,410 Black or African American controls	NA	4q26		rs112584520-?	NR	6E-7		0.4386633	[0.27-0.61] unit increase	Illumina [9875426] (imputed)	N
1469	chr4	115881826	115881827	rs1971146	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Postcentral gyrus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	4q26	NDST4	rs1971146-?		3E-6				Illumina [4322238] (imputed)	N
1469	chr4	115907554	115907555	rs8180156	34441435	Corma-Gomez A	2021-08-20	Diagnostics (Basel)	A Genome-Wide Association Study on Liver Stiffness Changes during Hepatitis C Virus Infection Cure.	Liver stiffness changes at sustained virological response following antiviral therapy in HCV infection	242 European ancestry individuals	NA	4q26		rs8180156-C	0.11	5E-6		16.62	[9.637-23.6] unit increase	Affymetrix [6939676] (imputed)	N
1469	chr4	115915616	115915617	rs11725345	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	4q26	Intergenic	rs11725345-C	0.4333	5E-9		0.0115	[0.0076-0.0154] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1469	chr4	115996672	115996673	rs10857036	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	4q26		rs10857036-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1470	chr4	116008476	116008477	rs116137224	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Alanine aminotransferase levels in low alcohol consumption	8,716 individuals	NA	4q26	NR	rs116137224-?	NR	4E-6		0.1753	[0.1-0.25] unit increase	Illumina [~ 7800000] (imputed)	N
1470	chr4	116039607	116039608	rs35134647	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	4q26	Intergenic	rs35134647-A	0.4356	4E-10	(MTAG)	0.0104	[0.0071-0.0137] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1470	chr4	116044410	116044411	rs7682531	29436472	Casalone E	2018-02-07	Ann Rheum Dis	A novel variant in GLIS3 is associated with osteoarthritis.	Osteoarthritis of the knee (with total joint replacement)	2,188 European ancestry cases, 9,939 European ancestry healthy controls	2,281 European ancestry cases, 9,194 European ancestry healthy controls	4q26	NR	rs7682531-C	0.408567	1E-6		1.02	[1.01-1.03]	Illumina [270934]	N
1470	chr4	116050206	116050207	rs510499	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Posterior-cingulate cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	4q26	NR	rs510499-?		8E-6				Illumina [4322238] (imputed)	N
1470	chr4	116053738	116053739	rs6818100	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	4q26	Intergenic	rs6818100-A	0.5644	2E-9	(MTAG)	0.0109	[0.0074-0.0144] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1470	chr4	116067489	116067490	rs482700	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Stromal-cell-derived factor 1 alpha levels	5,998 Finnish ancestry individuals	NA	4q26	NR	rs482700-G		2E-6		0.0893	[0.05-0.129] SD units increase	NR [10700000] (imputed)	N
1470	chr4	116121349	116121350	rs2892663	33987465	Alfradique-Dunham I	2021-01-28	Neurol Genet	Genome-Wide Association Study Meta-Analysis for Parkinson Disease Motor Subtypes.	Parkinson's disease motor subtype (tremor to postural instability/gait difficulty score ratio)	3,212 European ancestry individuals	NA	4q26	NDST4	rs2892663-T	0.5	6E-6		0.1	[0.061-0.139] unit increase	Illumina [14638245] (imputed)	N
1471	chr4	116134816	116134817	rs116233998	29317602	Hall LS	2018-01-10	Transl Psychiatry	Genome-wide meta-analyses of stratified depression in Generation Scotland and UK Biobank.	Major depressive disorder	6,997 European ancestry female cases, 16,172 European ancestry female controls, 3,852 European ancestry male cases, 16,034 European ancestry male controls	NA	4q26	intergenic	rs116233998-A	NR	7E-6	(males)	0.47	[0.27-0.67] unit decrease	Affymetrix, Illumina [7105178] (imputed)	N
1471	chr4	116169688	116169689	rs11731910	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Posterior-cingulate cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	4q26	NR	rs11731910-?		4E-6				Illumina [4322238] (imputed)	N
1471	chr4	116196305	116196306	rs13144478	22843503	Qi Q	2012-07-26	Hum Mol Genet	Genome-wide association analysis identifies TYW3/CRYZ and NDST4 loci associated with circulating resistin levels.	Resistin levels	3,248 European ancestry individuals	659 European ancestry individuals	4q26	NDST4	rs13144478-T	0.09	6E-18		0.13	[0.091-0.169] unit increase	Affymetrix, Illumina [2543887] (imputed)	N
1472	chr4	116261418	116261419	rs13144926	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	4q26	UGT8	rs13144926-?	NR	4E-7	(histidine)	0.1734831	[0.11-0.24] unit increase	Affymetrix [at least 2500000] (imputed)	N
1473	chr4	116403052	116403053	rs13139451	25676789	Wen CC	2015-05-01	Clin Pharmacol Ther	Genome-wide association study identifies ABCG2 (BCRP) as an allopurinol transporter and a determinant of drug response.	Serum uric acid levels in response to allopurinol in gout	1,607 European ancestry individuals, 238 East Asian individuals, 84 African American individuals, 85 Hispanic individuals, 13 individuals	NA	4q26	Intergenic	rs13139451-?		9E-6	(EA)	0.2559	[0.14-0.37] unit decrease	Affymetrix [NR] (imputed)	N
1474	chr4	116550159	116550160	rs147077988	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	225,112 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	445,360 individuals	4q26	intergenic	rs147077988-G	0.001	3E-73		27.6002	[24.61-30.59] mmHg increase	Affymetrix [NR] (imputed)	N
1474	chr4	116567608	116567609	rs139446049	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	4q26	NDST4	rs139446049-A	0.985728	2E-8	(-224 ms)	0.15772	[0.1-0.21] unit increase	Affymetrix [10000000] (imputed)	N
1474	chr4	116567608	116567609	rs139446049	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	4q26	NDST4	rs139446049-A	0.985728	1E-8	(-226 ms)	0.158703	[0.1-0.21] unit increase	Affymetrix [10000000] (imputed)	N
1474	chr4	116576273	116576274	rs6853094	27927641	Ombrello MJ	2016-12-07	Ann Rheum Dis	Genetic architecture distinguishes systemic juvenile idiopathic arthritis from other forms of juvenile idiopathic arthritis: clinical and therapeutic implications.	Systemic juvenile idiopathic arthritis	178 European ancestry cases, 434 European ancestry controls, 81 Hispanic/Latin American cases, 177 Hispanic/Latin American controls, 511 cases, 6,336 controls	NA	4q26	RPF2P2, PGAM4P2	rs6853094-?		3E-6	(Additive)	1.6	[1.30-1.90]	Illumina [5600610] (imputed)	N
1476	chr4	116841323	116841324	rs7668874	21844884	Wheeler HE	2011-08-16	Pharmacogenomics J	Genome-wide meta-analysis identifies variants associated with platinating agent susceptibility across populations.	Response to platinum-based chemotherapy (carboplatin)	176 Sub-Saharan African ancestry lymphoblastoid cell lines, 83 African ancestry lymphoblastoid cell lines, 175 East Asian ancestry lymphoblastoid cell lines, 174 European ancestry lymphoblastoid cell lines	NA	4q26	intergenic	rs7668874-?		6E-6				NR [~ 3000000] (imputed)	N
1477	chr4	116924183	116924184	rs17586843	23326517	Holliday EG	2013-01-11	PLoS One	Insights into the genetic architecture of early stage age-related macular degeneration: a genome-wide association study meta-analysis.	Age-related macular degeneration	3,772 European ancestry cases, 16,033 European ancestry controls	264 Asian ancestry cases, 3,926 Asian ancestry controls	4q26	intergenic	rs17586843-T	0.78	2E-6	(EA)	1.18	[1.10-1.27]	Affymetrix, Illumina [~ 2500000] (imputed)	N
1477	chr4	116934078	116934079	rs7676999	23326517	Holliday EG	2013-01-11	PLoS One	Insights into the genetic architecture of early stage age-related macular degeneration: a genome-wide association study meta-analysis.	Age-related macular degeneration	3,772 European ancestry cases, 16,033 European ancestry controls	264 Asian ancestry cases, 3,926 Asian ancestry controls	4q26	intergenic	rs7676999-?	0.79	1E-6		1.19	[1.11-1.28]	Affymetrix, Illumina [~ 2500000] (imputed)	N
1477	chr4	116940479	116940480	rs75925548	34779240	Cheng B	2021-11-01	Bone Joint Res	Gut microbiota is associated with bone mineral density : an observational and genome-wide environmental interaction analysis in the UK Biobank cohort.	Femur total bone mineral density x gut microbiota (genus Lactococcus) interaction	2,293 European ancestry individuals	NA	4q26		rs75925548-C	NR	2E-8		0.434	[0.28-0.58] unit decrease	Affymetrix [509886] (imputed)	N
1477	chr4	116955638	116955639	rs76052298	34779240	Cheng B	2021-11-01	Bone Joint Res	Gut microbiota is associated with bone mineral density : an observational and genome-wide environmental interaction analysis in the UK Biobank cohort.	Femur total bone mineral density x gut microbiota (genus Lactococcus) interaction	2,293 European ancestry individuals	NA	4q26		rs76052298-T	NR	2E-8		0.433	[0.28-0.58] unit decrease	Affymetrix [509886] (imputed)	N
1477	chr4	116956279	116956280	rs1378922	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	4q26	TRAM1L1	rs1378922-?	NR	9E-6	(adenosine monophosphate)	0.17417547	[0.097-0.251] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1477	chr4	116961108	116961109	rs114064439	34779240	Cheng B	2021-11-01	Bone Joint Res	Gut microbiota is associated with bone mineral density : an observational and genome-wide environmental interaction analysis in the UK Biobank cohort.	Femur total bone mineral density x gut microbiota (genus Lactococcus) interaction	2,293 European ancestry individuals	NA	4q26		rs114064439-A	NR	2E-9		0.53	[0.36-0.7] unit decrease	Affymetrix [509886] (imputed)	N
1477	chr4	116971229	116971230	rs11945065	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q26	NR	rs11945065-C	0.0122	2E-8	(MPO)	0.1765	NR unit decrease	Illumina [1671387] (imputed)	N
1477	chr4	116974236	116974237	rs72683028	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	4q26	intergenic	rs72683028-T	0.0363423228104665	4E-7	(F_Sutterellaceae_HB)	0.962056	[0.59-1.33] unit decrease	Illumina [7711310] (imputed)	N
1479	chr4	117254288	117254289	rs2389202	21658281	Aouizerat BE	2011-06-10	BMC Cardiovasc Disord	GWAS for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease.	Sudden cardiac arrest	88 European ancestry cases, 517 European ancestry controls	NA	4q26	intergenic	rs2389202-?	0.13	4E-7	(Recessive)	1.43	[1.25-1.65]	Affymetrix [319222]	N
1479	chr4	117262159	117262160	rs1873103	30801121	O'Donnell S	2019-02-25	Inflamm Bowel Dis	The Unsolved Link of Genetic Markers and Crohn's Disease Progression: A North American Cohort Experience.	Crohn's disease (indolent vs progressive)	562 European ancestry individuals with indolent disease, 701 European ancestry individuals with progressive disease	NA	4q26	NR	rs1873103-G	0.54458	5E-6				Illumina [5378266] (imputed)	N
1480	chr4	117401393	117401394	rs6533976	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	4q26	NR	rs6533976-?	NR	9E-12				Affymetrix [NR]	N
1481	chr4	117528558	117528559	rs76540759	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (positive Marder score)	1,390 European ancestry cases	NA	4q26		rs76540759-G	NR	9E-6	(GLM)	5.6127	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
1482	chr4	117607069	117607070	rs67769911	31212010	Cabana-Dominguez J	2019-06-15	Prog Neuropsychopharmacol Biol Psychiatry	Genome-wide association meta-analysis of cocaine dependence: Shared genetics with comorbid conditions.	Cocaine dependence	2,085 European ancestry cases, 4,293 European ancestry controls	NA	4q26	MIR1973	rs67769911-A	NR	6E-6		0.264	[0.15-0.38] unit increase	Illumina [9290362] (imputed)	N
1482	chr4	117608238	117608239	rs62314504	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Platelet-derived growth factor BB levels	8,293 Finnish ancestry individuals	NA	4q26	NR	rs62314504-C		9E-6		0.4345	[0.24-0.63] SD units increase	NR [10700000] (imputed)	N
1483	chr4	117724086	117724087	rs10009620	27018472	Leslie EJ	2016-04-07	Am J Hum Genet	A Genome-wide Association Study of Nonsyndromic Cleft Palate Identifies an Etiologic Missense Variant in GRHL3.	Cleft palate	38 European ancestry cases, 835 European ancestry controls, 21 Hispanic cases, 626 Hispanic controls, 2 Asian ancestry cases, 161 Asian ancestry controls, 38 Indian ancestry controls, 15 Sub-Saharan African ancestry cases, 2 African American cases, 68 Sub-Saharan African ancestry controls, 5 African American controls, 1 African control, 4 controls	246 European ancestry cases, 1,685 European ancestry controls	4q26	NR	rs10009620-T	NR	4E-6	(EA)	2.339	[1.633-3.35]	Illumina [34985077] (imputed)	N
1483	chr4	117724086	117724087	rs10009620	27018472	Leslie EJ	2016-04-07	Am J Hum Genet	A Genome-wide Association Study of Nonsyndromic Cleft Palate Identifies an Etiologic Missense Variant in GRHL3.	Cleft palate	38 European ancestry cases, 835 European ancestry controls, 21 Hispanic cases, 626 Hispanic controls, 2 Asian ancestry cases, 161 Asian ancestry controls, 38 Indian ancestry controls, 15 Sub-Saharan African ancestry cases, 2 African American cases, 68 Sub-Saharan African ancestry controls, 5 African American controls, 1 African control, 4 controls	246 European ancestry cases, 1,685 European ancestry controls	4q26	NR	rs10009620-T	NR	4E-6		2.3	[1.63-3.35]	Illumina [34985077] (imputed)	N
1483	chr4	117806128	117806129	rs141697850	26503814	Hardin M	2016-10-27	Pharmacogenomics J	A genome-wide analysis of the response to inhaled ?2-agonists in chronic obstructive pulmonary disease.	Response to bronchodilator in chronic obstructive pulmonary disease (change in FEV1)	5,766 European ancestry cases, 811 African American cases	NA	4q26	TRAM1L1	rs141697850-C	0.99	7E-7	(BDRBASE, AA)	15.05	[9.15-20.95] unit decrease	Illumina [NR] (imputed)	N
1484	chr4	117849448	117849449	rs2389339	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	4q26	NR	rs2389339-G	0.790576647349506	3E-6	(IGP60)	0.18	[0.1-0.26] unit increase	Illumina [~ 2500000] (imputed)	N
1484	chr4	117849448	117849449	rs2389339	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	4q26	NR	rs2389339-G	0.790110045780969	2E-6	(IGP46)	0.1846	[0.11-0.26] unit decrease	Illumina [~ 2500000] (imputed)	N
1484	chr4	117850455	117850456	rs979961	28008999	Ostrowski J	2016-12-23	Sci Rep	Genetic architecture differences between pediatric and adult-onset inflammatory bowel diseases in the Polish population.	Ulcerative colitis	269 Polish ancestry child cases, 259 Polish ancestry adult cases, 582 Polish ancestry controls	121 Polish ancestry child cases, 85 Polish ancestry adult cases, 352 Polish ancestry controls	4q26	Intergenic	rs979961-?		8E-7	(Adults)	1.8414419	[1.45-2.34]	Illumina [2612357]	N
1484	chr4	117875260	117875261	rs1440306	23897914	Wang H	2013-07-29	Pediatrics	A genome-wide association study (GWAS) for bronchopulmonary dysplasia.	Bronchopulmonary dysplasia	117 African American newborn cases, 108 African American newborn controls, 448 Hispanic newborn cases, 460 Hispanic newborn controls, 74 Asian or Pacific Islander ancestry newborn cases, 93 Asian or Pacific Islander ancestry newborn controls, 174 European ancestry newborn cases, 216 European ancestry newborn controls, 14 newborn cases, 22 newborn controls	371 newborn cases, 424 newborn controls	4q26	TRAM1L1, NDST4	rs1440306-A	0.75	1E-6	(Dominant model)	1.3699	[NR]	Illumina [1795103]	N
1485	chr4	117990453	117990454	rs34043524	29187748	Morey RA	2017-11-30	Transl Psychiatry	Genome-wide association study of subcortical brain volume in PTSD cases and trauma-exposed controls.	Lateral ventricle volume in trauma-exposed individuals	36 African American post-traumatic stress disorder cases, 38 African American trauma-exposed controls, 30 European ancestry post-traumatic stress disorder cases, 53 European ancestry trauma-exposed controls	NA	4q26	TRAM1L1	rs34043524-G	NR	2E-7	(right hemisphere)		unit decrease	Illumina [2711511] (imputed)	N
1485	chr4	118035558	118035559	rs114452217	25839716	Ng E	2015-04-02	Environ Res	Genome-wide association study of plasma levels of polychlorinated biphenyls disclose an association with the CYP2B6 gene in a population-based sample.	Polychlorinated biphenyl levels	922 European ancestry individuals	NA	4q26	NR	rs114452217-?		1E-7	(PCB194)	1.27	[0.8-1.74] unit decrease	Illumina [8736858] (imputed)	N
1485	chr4	118043417	118043418	rs76957229	33331911	Freidin MB	2020-12-17	Rheumatology (Oxford)	An association between chronic widespread pain and the gut microbiome.	Coprococcus comes	3,521 European or unknown ancestry individuals	NA	4q26		rs76957229-T	NR	7E-8		0.1257	[0.08-0.171] unit increase	NR [4841651] (imputed)	N
1485	chr4	118079906	118079907	rs10516635	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue adjusted for BMI	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	4q26	TRAM1L1	rs10516635-A	0.11	8E-6	(Overall)			Affymetrix, Illumina [2500000] (imputed)	N
1485	chr4	118093136	118093137	rs10433903	19553259	Cotsapas C	2009-06-24	Hum Mol Genet	Common body mass index-associated variants confer risk of extreme obesity.	Obesity (extreme)	775 European ancestry cases, 3,197 European ancestry controls	NA	4q26	TRAM1L1	rs10433903-T	0.66	3E-6		1.33	[1.19-1.52]	Illumina [457251]	N
1487	chr4	118230909	118230910	rs4432822	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Alcohol consumption x experiences in childhood (felt loved by family member) interaction	41,648 European ancestry individuals	NA	4q26		rs4432822-?	NR	2E-8		1.7363	[1.13-2.34] unit decrease	Affymetrix [NR] (imputed)	N
1487	chr4	118273077	118273078	rs17865343	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (90 or 130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	4q26	intergenic	rs17865343-?	NR	6E-6		0.198	[0.088-0.308] unit decrease	Illumina [at least 13000000] (imputed)	N
1487	chr4	118315559	118315560	rs4339281	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	4q26		rs4339281-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1487	chr4	118332254	118332255	rs4318720	20031603	Marroni F	2009-08-01	Circ Cardiovasc Genet	A genome-wide association scan of RR and QT interval duration in 3 European genetically isolated populations: the EUROSPAN project.	QT interval	2,325 European ancestry individuals	NA	4q26	intergenic	rs4318720-A	0.09	8E-7		0.28	[0.16-0.40] unit increase	Illumina [~ 318327]	N
1487	chr4	118334618	118334619	rs6828740	24487271	Weizman A	2014-03-01	Inflamm Bowel Dis	Clinical, serologic, and genetic factors associated with pyoderma gangrenosum and erythema nodosum in inflammatory bowel disease patients.	Erythema nodosum in inflammatory bowel disease	103 European ancestry cases, 5,653 European ancestry controls	NA	4q26	intergenic	rs6828740-C	NR	5E-8		4.14	[2.50-6.90]	Illumina [2017629] (imputed)	N
1487	chr4	118340707	118340708	rs17861885	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	4q26	NR	rs17861885-?	NR	2E-7		0.008905	[0.0055-0.0123] unit decrease	Affymetrix [805426] (imputed)	N
1487	chr4	118342374	118342375	rs7664424	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Coffee consumption	335,909 European ancestry individuals	39,924 European ancestry individuals	4q26	LINC01378	rs7664424-C	0.3788	3E-6		0.0071	[0.0042-0.01] unit increase	Affymetrix [~ 7740000] (imputed)	N
1487	chr4	118354826	118354827	rs17865150	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	4q26	NDST3	rs17865150-?	NR	6E-6	(PC 38:2)	0.5757709	[0.33-0.83] unit increase	Affymetrix [at least 2500000] (imputed)	N
1487	chr4	118357404	118357405	rs7693703	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	4q26	NR	rs7693703-?		3E-9		0.0228437	[0.015-0.03] unit increase	Affymetrix [19400418] (imputed)	N
1488	chr4	118373434	118373435	rs11932518	29246731	de Toro-Martin J	2017-11-02	J Clin Lipidol	A common variant in ARHGEF10 alters delta-6 desaturase activity and influence susceptibility to hypertriglyceridemia.	Delta-5 desaturase activity response to n3-polyunsaturated fat supplement	81 extreme responder individuals, 60 non-responder individuals	NA	4q26	LINC01378	rs11932518-G	0.01	1E-9		3.697	[2.60-4.79] unit increase	Illumina [2668805]	N
1488	chr4	118456116	118456117	rs1948246	33169155	Bigdeli TB	2020-11-10	Schizophr Bull	Genome-Wide Association Studies of Schizophrenia and Bipolar Disorder in a Diverse Cohort of US Veterans.	Bipolar disorder	24,267 European ancestry cases, 3,027 African American cases, 1,032 Latino cases, 79,492 European ancestry controls, 8,097 African American controls, 3,090 Latino controls	NA	4q26	TRAM1L1	rs1948246-G	NR	5E-9		1.07	[1.05-1.09]	Affymetrix [up to 49134253] (imputed)	N
1488	chr4	118469569	118469570	rs998817	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar I disorder	14,879 European ancestry cases, 31,358 European ancestry controls	NA	4q26	NR	rs998817-T	0.507	8E-7		1.07735		NR [9372253] (imputed)	N
1488	chr4	118472732	118472733	rs2635253	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	4q26	intergenic	rs2635253-T	0.491	1E-7		1.06099	[1.04-1.08]	NR [9372253] (imputed)	N
1489	chr4	118501157	118501158	rs11733276	29160301	Fabbri C	2017-11-21	Pharmacogenomics J	New insights into the pharmacogenomics of antidepressant response from the GENDEP and STAR*D studies: rare variant analysis and high-density imputation.	Response to antidepressants (symptom remission)	2,145 European ancestry individuals	NA	4q26	NR	rs11733276-?	NR	5E-7		1.61577	NR	Affymetrix, Illumina [7062950] (imputed)	N
1489	chr4	118507351	118507352	rs12644500	29160301	Fabbri C	2017-11-21	Pharmacogenomics J	New insights into the pharmacogenomics of antidepressant response from the GENDEP and STAR*D studies: rare variant analysis and high-density imputation.	Response to SSRI (symptom remission)	1,828 European ancestry individuals	NA	4q26	NR	rs12644500-?	NR	5E-6		1.6038493	NR	Affymetrix, Illumina [7062950] (imputed)	N
1489	chr4	118514235	118514236	rs1955250	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	4q26		rs1955250-A	0.9137	2E-8		0.014	[0.0091-0.0189] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1489	chr4	118514235	118514236	rs1955250	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	4q26	Intergenic	rs1955250-A	0.9137	1E-8	(MTAG)	0.0134	[0.0089-0.0179] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1489	chr4	118545386	118545387	rs1948223	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar I disorder	14,879 European ancestry cases, 31,358 European ancestry controls	NA	4q26	NR	rs1948223-C	0.33899999999999997	6E-7		1.0842576	[NR]	NR [9372253] (imputed)	N
1489	chr4	118564761	118564762	rs190245578	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs non-severe)	86 Finnish ancestry male severe erosion cases, 50 Finnish ancestry female severe erosion cases, 817 Finnish ancestry male non-severe erosion controls, 991 Finnish ancestry female non-severe erosion controls	NA	4q26	NDST3	rs190245578-?	NR	3E-8	(female)	4.5	[2.48-8.07]	Illumina [NR] (imputed)	N
1490	chr4	118644820	118644821	rs35553880	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	1,505 Ashkenazi Jewish founder cases, 2,553 Ashkenazi Jewish founder controls	NA	4q26	NR	rs35553880-T	NR	8E-6		1.25	[NR]	Illumina [up to 9792010] (imputed)	N
1490	chr4	118646906	118646907	rs11098403	24253340	Lencz T	2013-11-19	Nat Commun	Genome-wide association study implicates NDST3 in schizophrenia and bipolar disorder.	Schizophrenia	904 Ashkenazi Jewish cases, 1,640 Ashkenazi Jewish controls	3,944 European ancestry cases, 3,049 European ancestry controls, 921 African American cases, 954 African American controls, 550 Japanese ancestry cases, 530 Japanese ancestry controls	4q26	NDST3	rs11098403-G	NR	3E-8		1.15	[1.08-1.21]	Illumina [762372]	N
1490	chr4	118651822	118651823	rs4422476	21507922	Ramsuran V	2011-05-01	Clin Infect Dis	Duffy-null-associated low neutrophil counts influence HIV-1 susceptibility in high-risk South African black women.	Neutrophil count	115 African ancestry HIV-negative individuals	NA	4q26	AC109592.1, AC092661.1	rs4422476-?	NR	8E-6				Illumina [874956]	N
1490	chr4	118661651	118661652	rs10005422	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	4q26	intergenic	rs10005422-T	0.397	6E-6		1.0564348		NR [9372253] (imputed)	N
1491	chr4	118827750	118827751	rs28419375	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	4q26	NR	rs28419375-?	NR	8E-9		1.054641	[1.04-1.07]	Affymetrix, Illumina [12447948] (imputed)	N
1491	chr4	118841270	118841271	rs114425659	31178898	Lin BM	2019-05-24	Front Genet	Genetics of Chronic Kidney Disease Stages Across Ancestries: The PAGE Study.	End-stage kidney disease	584 African American cases, 282 Hispanic cases, 112 East Asian cases, 96 Native Hawaiian cases, 1 American Indian cases, 30 cases, 8,429 African American controls, 15,852 Hispanic controls, 3,536 East Asian controls, 2,892 Native Hawaiian controls, 49 American Indian controls, 936 controls	NA	4q26	NDST3	rs114425659-A	0.039	9E-7		1.87	[1.45-2.39]	Illumina [1438399] (imputed)	N
1491	chr4	118878132	118878133	rs6838310	25644384	Davies G	2015-02-03	Mol Psychiatry	Genetic contributions to variation in general cognitive function: a meta-analysis of genome-wide association studies in the CHARGE consortium (N=53949).	Cognitive function	51,719 European ancestry individuals, 1,473 Erasmus Rucphen (founder/genetic isolate) individuals, 327 Korculan (founder/genetic isolate) individuals, 430 Orcadian (founder/genetic isolate) individuals	NA	4q26	intergenic	rs6838310-?	NR	9E-7		0.029	[0.017-0.041] unit decrease	Affymetrix, Illumina [2478500] (imputed)	N
1492	chr4	118919496	118919497	rs4833558	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	4q26	NDST3	rs4833558-C	NR	4E-8		1.0570824	[1.04-1.08]	Illumina [6627481] (imputed)	N
1492	chr4	118919496	118919497	rs4833558	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	4q26	intergenic	rs4833558-C	NR	3E-6		1.0471205	[1.03-1.07]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1492	chr4	118936190	118936191	rs57360718	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	4q26	NR	rs57360718-C	NR	7E-9		0.02831	[0.019-0.038] unit increase	Affymetrix [10847151] (imputed)	N
1492	chr4	118936190	118936191	rs57360718	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	4q26	NR	rs57360718-T	NR	2E-8		5.604	z score decrease	Affymetrix [10847151] (imputed)	N
1492	chr4	118940051	118940052	rs2389487	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	4q26	PRSS12	rs2389487-?	NR	4E-6	(aspartate)	0.28921983	[0.17-0.41] unit increase	Affymetrix [at least 2500000] (imputed)	N
1492	chr4	118969488	118969489	rs142455419	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q26	NR	rs142455419-T	0.01045	2E-8	(GLDC)	3.602	NR unit increase	Illumina [1671387] (imputed)	N
1492	chr4	118969886	118969887	rs2389499	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling worry	372,869 European ancestry individuals	NA	4q26	NDST3	rs2389499-A	0.248113	4E-8		5.472	unit increase	NR [10847151] (imputed)	N
1492	chr4	118974819	118974820	rs7436139	32399468	Melhuish Beaupre LM	2020-01-08	Mol Neuropsychiatry	Genome-Wide Association Study of Sleep Disturbances in Depressive Disorders.	Sleep disturbance (changes in sleep) in depressive disorders	36 European ancestry cases, 329 European ancestry controls	NA	4q26		rs7436139-?	NR	5E-6		0.2605		Illumina [5932083] (imputed)	N
1492	chr4	119006101	119006102	rs138056327	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	4q26	Intergenic	rs138056327-T	0.062	1E-8	(MTAG)	0.0156	[0.01-0.021] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1492	chr4	119009218	119009219	rs2389518	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	4q26	NR	rs2389518-?	NR	1E-7		5.266	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1493	chr4	119054787	119054788	rs6851494	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	4q26	NR	rs6851494-G	NR	2E-8		0.017	[0.011-0.023] unit increase	Affymetrix [10847151] (imputed)	N
1493	chr4	119082075	119082076	rs6835510	32399468	Melhuish Beaupre LM	2020-01-08	Mol Neuropsychiatry	Genome-Wide Association Study of Sleep Disturbances in Depressive Disorders.	Sleep disturbance (changes in sleep) in depressive disorders	36 European ancestry cases, 329 European ancestry controls	NA	4q26		rs6835510-?	NR	6E-6		0.1882		Illumina [5932083] (imputed)	N
1493	chr4	119115916	119115917	rs115997623	28167095	Forno E	2017-02-04	J Allergy Clin Immunol	Genome-wide interaction study of dust mite allergen on lung function in children with asthma.	Lung function (FEV1/FVC) in asthma (dust mite allergen exposure interaction)	440 Puerto Rican ancestry child cases	497 European ancestry child cases, 605 Hispanic child cases	4q26	NR	rs115997623-T	0.011	2E-6				Illumina [1830000] (imputed)	N
1494	chr4	119156480	119156481	rs35876590	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	4q26		rs35876590-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1494	chr4	119184568	119184569	rs674514	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	4q26	NR	rs674514-T	NR	3E-8		5.522	z score decrease	Affymetrix [10847151] (imputed)	N
1494	chr4	119187631	119187632	rs611531	33740410	Warrier V	2021-03-16	Lancet Psychiatry	Gene-environment correlations and causal effects of childhood maltreatment on physical and mental health: a genetically informed approach.	Childhood maltreatment	185,414 European ancestry individuals	NA	4q26	NR	rs611531-A	0.22	1E-8		0.024	[0.016-0.032] unit decrease	Affymetrix, Illumina [at least 500527] (imputed)	N
1494	chr4	119249834	119249835	rs55699931	32963231	Hofer E	2020-09-22	Nat Commun	Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.	Cortical surface area	18,617 European and African American ancestry individuals	22,363 European ancestry individuals	4q26	PRSS12	rs55699931-?		7E-10	(Superior temporal)			Affymetrix, Illumina [NR] (imputed)	N
1494	chr4	119251156	119251157	rs1514658	28468790	Agopian AJ	2017-06-01	Circ Cardiovasc Genet	Genome-Wide Association Studies and Meta-Analyses for Congenital Heart Defects.	Congenital heart disease (maternal effect)	1,119 European ancestry trios	NA	4q26	PRSS12	rs1514658-?	NR	8E-6		1.508177	[1.259539-1.805898]	Illumina [at least 4756722] (imputed)	N
1495	chr4	119280166	119280167	rs7661210	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	4q26		rs7661210-G	0.36	3E-18		8.72	z score increase	Affymetrix [9061022] (imputed)	N
1495	chr4	119281699	119281700	rs113840095	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	4q26	PRSS12	rs113840095-A	0.0136654725663473	8E-6	(G_Intestinibacter_RNT)	0.557176	[0.31-0.8] unit decrease	Illumina [7711310] (imputed)	N
1495	chr4	119314913	119314914	rs12512082	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	4q26		rs12512082-C	0.45	5E-30		11.38	z score increase	Affymetrix [9061022] (imputed)	N
1495	chr4	119314913	119314914	rs12512082	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	4q26		rs12512082-C	0.45	6E-18		8.63	z score increase	Affymetrix [9061022] (imputed)	N
1495	chr4	119314913	119314914	rs12512082	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	4q26	NR	rs12512082-C	0.4047	2E-16				NR [9056863] (imputed)	N
1495	chr4	119314913	119314914	rs12512082	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	4q26	NR	rs12512082-C	0.4047	1E-17				NR [9056863] (imputed)	N
1495	chr4	119314913	119314914	rs12512082	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 10)	19,670 European ancestry individuals	NA	4q26		rs12512082-?	NR	4E-10				NR [9705931] (imputed)	N
1496	chr4	119425910	119425911	rs145639082	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,931 Sub-Saharan African ancestry males	NA	4q26		rs145639082-T	0.947125	6E-6		0.0291008	[0.017-0.041] unit increase	Illumina [13900000] (imputed)	N
1496	chr4	119427956	119427957	rs28580297	25760438	Anderson D	2015-03-11	PLoS One	First genome-wide association study in an Australian aboriginal population provides insights into genetic risk factors for body mass index and type 2 diabetes.	Body mass index	361 Martu Australian Aboriginal ancestry individuals	NA	4q26	CEP170P1	rs28580297-?	NR	9E-6		1.46	[0.81-2.11] unit decrease	Illumina [1075436] (imputed)	N
1498	chr4	119691623	119691624	rs4834703	25948407	Kertai MD	2015-05-06	BMJ Open	Genome-wide association study of perioperative myocardial infarction after coronary artery bypass surgery.	Perioperative myocardial infarction in coronary artery bypass surgery	112 cases, 1,321 controls	113 European ancestry cases, 509 European ancestry controls	4q26	SEC24D	rs4834703-?	NR	7E-6		1.98	[1.47-2.66]	Illumina [534390]	N
1498	chr4	119716949	119716950	rs28595532	27028160	Sherva R	2016-03-30	JAMA Psychiatry	Genome-wide Association Study of Cannabis Dependence Severity, Novel Risk Variants, and Shared Genetic Risks.	Cannabis dependence symptom count	Up to 6,000 African American ancestry individuals, 8,754 European ancestry individuals	At least 1,893 European ancestry individuals	4q26	SEC24D	rs28595532-A	0.94	4E-6				Illumina [NR] (imputed)	N
1498	chr4	119716949	119716950	rs28595532	27028160	Sherva R	2016-03-30	JAMA Psychiatry	Genome-wide Association Study of Cannabis Dependence Severity, Novel Risk Variants, and Shared Genetic Risks.	Cannabis dependence symptom count	Up to 6,000 African American ancestry individuals, 8,754 European ancestry individuals	At least 1,893 European ancestry individuals	4q26	SEC24D	rs28595532-A	0.94	2E-7	(AA)			Illumina [NR] (imputed)	N
1498	chr4	119723659	119723660	rs4834704	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs4834704-T	0.583453	2E-8		0.0513721	[0.033-0.07] decrease	Affymetrix [11014269] (imputed)	N
1498	chr4	119789423	119789424	rs56055826	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	4q26		rs56055826-?	NR	5E-9		0.0254409	[0.017-0.034] unit increase	Affymetrix [20259828] (imputed)	N
1498	chr4	119790516	119790517	rs116587722	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	4q26	SYNPO2	rs116587722-T	0.945794	3E-9		0.0243093	[0.016-0.032] unit increase	NR [13737936] (imputed)	N
1498	chr4	119792958	119792959	rs144144855	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	4q26		rs144144855-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1499	chr4	119801646	119801647	rs112162751	33040646	Aherrahrou R	2020-10-12	Circ Res	Genetic Regulation of Atherosclerosis-Relevant Phenotypes in Human Vascular Smooth Muscle Cells.	Aortic vascular smooth muscle cell calcification in response to osteogenic stimuli	69 European ancestry individuals, 64 Hispanic/Latin American individuals, 12 African ancestry individuals, 6 East Asian ancestry individuals	NA	4q26	SYNPO2	rs112162751-?	NR	3E-8	calcification (osteogenic media)	0.54	[0.36-0.72] unit decrease	Illumina [6315002] (imputed)	N
1499	chr4	119826133	119826134	rs34395091	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q26	NR	rs34395091-T	0.01568	5E-10	(SEPT11)	0.03676	NR unit increase	Illumina [1671387] (imputed)	N
1499	chr4	119863475	119863476	rs1472066	23967269	Kim JH	2013-08-13	PLoS One	A genome-wide association study of total serum and mite-specific IgEs in asthma patients.	IgE levels in asthmatics	877 Korean ancestry cases	NA	4q26	SYNPO2	rs1472066-?		8E-6				Illumina [442089]	N
1499	chr4	119879587	119879588	rs75244633	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels (MTAG)	18,590 European ancestry individuals	NA	4q26		rs75244633-?	NR	4E-7		5.08	Z score increase	Affymetrix, Illumina [NR] (imputed)	N
1499	chr4	119879587	119879588	rs75244633	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels	18,590 European ancestry individuals, 3,806 African American individuals, 774 Chinese ancestry individuals, 1,446 Hispanics ancestry individuals	NA	4q26		rs75244633-?	NR	1E-7		0.14	[0.087-0.193] unit increase	Affymetrix, Illumina [10661418] (imputed)	N
1499	chr4	119879587	119879588	rs75244633	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels	18,590 European ancestry individuals	NA	4q26		rs75244633-?	NR	8E-7		0.15	[0.091-0.209] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1499	chr4	119879587	119879588	rs75244633	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin I concentration (MTAG)	12,730 European ancestry individuals	NA	4q26		rs75244633-?	NR	4E-7		5.06	Z score increase	Affymetrix, Illumina [NR] (imputed)	N
1499	chr4	119918959	119918960	rs190352580	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	4q26	SYNPO2	rs190352580-T	0.00816443376702207	4E-6	(F_Streptococcaceae_HB)	1.48768	[0.85-2.12] unit decrease	Illumina [7711310] (imputed)	N
1500	chr4	119947187	119947188	rs7671665	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	4q26	NR	rs7671665-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
1500	chr4	119948045	119948046	rs17263971	30920136	Stapleton CP	2019-02-27	Am J Transplant	The impact of donor and recipient common clinical and genetic variation on estimated glomerular filtration rate in a European renal transplant population.	Estimated glomerular filtration rate after 5 years in renal transplantation (donor effect)	Up to 2,921 European ancestry individuals	NA	4q26	SYNPO2	rs17263971-A	NR	4E-6				Illumina [up to 3951530] (imputed)	N
1500	chr4	119949959	119949960	rs17329882	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	Invasive epithelial ovarian cancer	22,406 European ancestry cases, 40,941 European ancestry controls	NA	4q26	NR	rs17329882-C	0.241	3E-6		1.07509	[1.0431816063-1.1079744406]	Illumina [11595112] (imputed)	N
1500	chr4	119949959	119949960	rs17329882	25581431	Kuchenbaecker KB	2015-01-12	Nat Genet	Identification of six new susceptibility loci for invasive epithelial ovarian cancer.	Epithelial ovarian cancer	4,368 European ancestry cases, 9,123 European ancestry controls,	2,462 European ancestry BRCA1 mutation carrier cases, 12,790 European ancestry BRCA1 mutation carrier controls, up to 631 European ancestry BRCA2 mutation carrier cases, 7,580 European ancestry BRCA2 mutation carrier controls, 9,627 European ancestry serous cases, 1,442 European ancestry non-serous cases, 21,722 European ancestry controls	4q26	SYNPO2	rs17329882-?	NR	2E-8	(Serous)	1.11	[1.07-1.16]	Illumina [up to 10962898] (imputed)	N
1500	chr4	119949959	119949960	rs17329882	25581431	Kuchenbaecker KB	2015-01-12	Nat Genet	Identification of six new susceptibility loci for invasive epithelial ovarian cancer.	Epithelial ovarian cancer	4,368 European ancestry cases, 9,123 European ancestry controls,	2,462 European ancestry BRCA1 mutation carrier cases, 12,790 European ancestry BRCA1 mutation carrier controls, up to 631 European ancestry BRCA2 mutation carrier cases, 7,580 European ancestry BRCA2 mutation carrier controls, 9,627 European ancestry serous cases, 1,442 European ancestry non-serous cases, 21,722 European ancestry controls	4q26	SYNPO2	rs17329882-?	NR	2E-8		1.09	[1.06-1.13]	Illumina [up to 10962898] (imputed)	N
1500	chr4	119951646	119951647	rs7698598	24529757	Xie T	2014-01-17	Neurobiol Aging	Genome-wide association study combining pathway analysis for typical sporadic amyotrophic lateral sclerosis in Chinese Han populations.	Amyotrophic lateral sclerosis (sporadic)	250 Han Chinese ancestry cases, 250 Han Chinese ancestry controls	NA	4q26	SYNPO2	rs7698598-?		2E-6				Illumina [859311]	N
1500	chr4	119958808	119958809	rs4834735	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	NA	4q26	SYNPO2	rs4834735-T	0.1367	3E-9		0.1511	[0.1-0.2] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1500	chr4	119997911	119997912	rs11723454	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	4q26		rs11723454-A	NR	4E-8		0.0224	[0.014-0.03] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
1500	chr4	120006975	120006976	rs138727949	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	4q26		rs138727949-?	NR	7E-9				NR [~ 8900000] (imputed)	N
1500	chr4	120013270	120013271	rs1026501	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	148,767 East Asian ancestry individuals	NA	4q26		rs1026501-C	0.737347	2E-9		0.0230433	[0.016-0.031] unit increase	Illumina [13478792] (imputed)	N
1500	chr4	120034115	120034116	rs28455602	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	4q26	MYOZ2	rs28455602-A	0.814684	2E-8		0.0138196	[0.009-0.0186] unit decrease	Affymetrix [NR] (imputed)	N
1501	chr4	120070078	120070079	rs78277783	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	4q26	MYOZ2	rs78277783-A	0.2705	2E-8		0.4232	[0.28-0.57] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1501	chr4	120106347	120106348	rs7655064	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	4q26	MYOZ2	rs7655064-C	0.12536	2E-10		0.021685224	[0.015-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1501	chr4	120106347	120106348	rs7655064	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	4q26	NR	rs7655064-T	0.874837	4E-8		0.00840693	[0.005-0.0118] unit increase	Affymetrix [16582621] (imputed)	N
1501	chr4	120106347	120106348	rs7655064	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	4q26	NR	rs7655064-T	0.874837	7E-7		0.00786542	[0.0042-0.0115] unit increase	Affymetrix [16582614] (imputed)	N
1501	chr4	120106347	120106348	rs7655064	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	4q26	NR	rs7655064-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
1501	chr4	120106347	120106348	rs7655064	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	4q26		rs7655064-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1501	chr4	120106765	120106766	rs7678138	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	4q26		rs7678138-A	NR	4E-10		0.0202	[0.014-0.026] unit decrease	Affymetrix, Illumina [20536134] (imputed)	N
1501	chr4	120106765	120106766	rs7678138	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	4q26	NR	rs7678138-G	0.874484	2E-18		0.0105258	[0.0081-0.013] unit increase	Affymetrix [16582909] (imputed)	N
1501	chr4	120106765	120106766	rs7678138	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	4q26	NR	rs7678138-G	0.874484	2E-13		0.00987901	[0.0071-0.0126] unit increase	Affymetrix [16582965] (imputed)	N
1501	chr4	120123416	120123417	rs138204164	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	4q26	NR	rs138204164-C	0.87441	1E-10		0.0116446	[0.008-0.0153] unit increase	Affymetrix [16585854] (imputed)	N
1501	chr4	120123416	120123417	rs138204164	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	4q26	NR	rs138204164-C	0.87441	3E-8		0.0114227	[0.0072-0.0156] unit increase	Affymetrix [16585866] (imputed)	N
1501	chr4	120127760	120127761	rs1397610	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	4q26	NR	rs1397610-C	0.306865	9E-13		0.0514841	[0.037-0.066] unit decrease	Affymetrix [17914406] (imputed)	N
1501	chr4	120128059	120128060	rs71610255	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	4q26		rs71610255-C	NR	6E-20		0.0319	[0.025-0.039] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
1501	chr4	120131643	120131644	rs11737560	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	4q26	NR	rs11737560-T	NR	2E-9		0.0218	[0.015-0.029] unit decrease	Affymetrix [9000000] (imputed)	N
1501	chr4	120131643	120131644	rs11737560	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	4q26	NR	rs11737560-T	NR	4E-16		0.0309	[0.023-0.038] unit decrease	Affymetrix [9000000] (imputed)	N
1501	chr4	120131643	120131644	rs11737560	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	4q26	NR	rs11737560-T	NR	8E-11		0.0247	[0.017-0.032] unit decrease	Affymetrix [9000000] (imputed)	N
1501	chr4	120134796	120134796	rs141285286	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	4q26	USP53	rs141285286-GATATAT	NR	2E-10		0.0269267	[0.019-0.035] unit increase	Affymetrix [319769] (imputed)	N
1501	chr4	120134796	120134796	rs141285286	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	4q26	USP53	rs141285286-GATATAT	NR	5E-11		0.0278676	[0.02-0.036] unit increase	Affymetrix [319769] (imputed)	N
1501	chr4	120134796	120134796	rs141285286	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	4q26	USP53	rs141285286-GATATAT	NR	2E-11		0.0287853	[0.02-0.037] unit increase	Affymetrix [321114] (imputed)	N
1501	chr4	120134796	120134796	rs141285286	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	4q26	USP53	rs141285286-GATATAT	NR	4E-11		0.0283121	[0.02-0.037] unit increase	Affymetrix [321169] (imputed)	N
1501	chr4	120142305	120142306	rs10007409	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	4q26	USP53	rs10007409-T	0.3101	7E-22		0.0196	[0.016-0.024] unit decrease	Affymetrix [18391927] (imputed)	N
1501	chr4	120155805	120155806	rs4145952	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	4q26	NR	rs4145952-A	0.399341	1E-11		0.013326	[0.0095-0.0172] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
1501	chr4	120187610	120187611	rs11098499	23322567	Lopes MC	2013-01-15	Invest Ophthalmol Vis Sci	Identification of a candidate gene for astigmatism.	Corneal astigmatism	22,100 European ancestry individuals		4q26	NR	rs11098499-C		9E-6		0.048	[NR] unit increase	Affymetrix, Illumina [2800000] (imputed)	N
1502	chr4	120214029	120214030	rs3749591	29273807	Turcot V	2017-12-22	Nat Genet	Protein-altering variants associated with body mass index implicate pathways that control energy intake and expenditure in obesity.	Body mass index	up to 449,889 European ancestry individuals, up to 29,398 South Asian ancestry individuals, up to 27,610 African American individuals, up to 8,839 East Asian individuals, up to 10,772 Hispanic ancestry individuals	up to 196,766 European ancestry individuals	4q26	USP53	rs3749591-G	0.3077	2E-9		0.0118	[0.0079-0.0157] unit increase	Illumina [246328]	N
1502	chr4	120241848	120241849	rs4834770	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	4q26	C4orf3, FABP2	rs4834770-A	0.4341709	4E-12	(EA, cGMP-specific 3',5'-cyclic phosphodiesterase)	0.314	[0.23-0.4] unit decrease	Affymetrix [509946]	N
1502	chr4	120246688	120246689	rs185481756	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	4q26	NR	rs185481756-C	0.312545	2E-12		0.0525631	[0.038-0.067] unit increase	Affymetrix [17914406] (imputed)	N
1502	chr4	120257738	120257739	rs2017058	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	4q26	KLHL2P1	rs2017058-C	0.509332	9E-20		0.020571448	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1502	chr4	120258206	120258207	rs1814813	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	4q26	NR	rs1814813-G	0.36911	2E-25		0.018735	[0.015-0.022] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1502	chr4	120258206	120258207	rs1814813	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	4q26	NR	rs1814813-?	NR	2E-9				Affymetrix [NR]	N
1502	chr4	120263314	120263315	rs10006495	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q26	NR	rs10006495-G	0.342066	6E-13				Affymetrix, Illumina [24649327] (imputed)	N
1502	chr4	120263314	120263315	rs10006495	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	4q26	NR	rs10006495-G	0.353947	1E-15		0.015667	[0.012-0.02] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1502	chr4	120263368	120263368	rs200519383	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	4q26	KLHL2P1	rs200519383-TG	0.360583	1E-17		0.02034214	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1502	chr4	120264995	120264996	rs9995716	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	4q26		rs9995716-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1502	chr4	120265258	120265259	rs10028773	25201988	Rietveld CA	2014-09-08	Proc Natl Acad Sci U S A	Common genetic variants associated with cognitive performance identified using the proxy-phenotype method.	Educational attainment	106,736 European ancestry individuals	NA	4q26	intergenic	rs10028773-C	0.675	7E-6		0.02	[NR] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1502	chr4	120275662	120275663	rs56818816	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	4q26	NR	rs56818816-?	NR	1E-14				Affymetrix [~ 8270000] (imputed)	N
1502	chr4	120278099	120278100	rs11727963	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	4q26		rs11727963-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1502	chr4	120319433	120319434	rs12509234	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	4q26	NA	rs12509234-T	0.7214	4E-10		0.0116	[0.0079-0.0153] unit decrease	NR [~ 27400000] (imputed)	N
1503	chr4	120328665	120328666	rs7655723	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 31)	4,680 European ancestry individuals	3,566 European ancestry individuals	4q26		rs7655723-A	0.287537862	8E-9				Illumina [7417619] (imputed)	N
1503	chr4	120330154	120330155	rs74693727	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	4q26	RP11-33B1.4	rs74693727-T	0.328347	4E-12		0.016385991	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1503	chr4	120362960	120362961	rs62319568	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	4q26	NR	rs62319568-A	0.8557	7E-8		0.0152	[0.0097-0.0207] unit decrease	NR [~ 27400000] (imputed)	N
1503	chr4	120368555	120368556	rs9307475	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	4q26	RP11-33B1.2	rs9307475-A	0.327403	3E-9		0.014029144	[0.0094-0.0187] unit decrease	Affymetrix [93095623] (imputed)	N
1503	chr4	120376317	120376318	rs28450134	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	4q26	NR	rs28450134-C	0.311643	1E-9		0.0453653	[0.031-0.06] unit increase	Affymetrix [17914406] (imputed)	N
1503	chr4	120381522	120381523	rs10017335	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	4q26	NR	rs10017335-?	NR	5E-7				Affymetrix [NR]	N
1503	chr4	120385471	120385472	rs12505876	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	4q26		rs12505876-A	NR	5E-16		0.0155	[0.012-0.019] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1503	chr4	120416444	120416445	rs13124532	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	4q26	NR	rs13124532-T	0.1453	6E-7		0.0128	[0.0077-0.0179] unit increase	NR [~ 27400000] (imputed)	N
1503	chr4	120422406	120422407	rs149385790	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Height	458,235 European ancestry individuals	NA	4q26		rs149385790-?	NR	2E-14		0.194486	[0.14-0.24] unit increase	NR [9800000] (imputed)	N
1503	chr4	120424579	120424580	rs13107334	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	4q26	RP11-33B1.1, PDE5A	rs13107334-G	NR	1E-8		0.0204309	[0.013-0.027] unit increase	Affymetrix [321114] (imputed)	N
1503	chr4	120424579	120424580	rs13107334	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	4q26	NR	rs13107334-G	NR	3E-12		0.022	[0.016-0.028] unit decrease	Affymetrix [9000000] (imputed)	N
1503	chr4	120425214	120425215	rs2127826	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (CGI-S score)	1,390 European ancestry cases	NA	4q26		rs2127826-A	NR	3E-6	(GLM)	0.2289	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
1503	chr4	120427488	120427489	rs7692994	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	4q26	NR	rs7692994-A	0.330225	6E-12		0.013755	[0.0098-0.0177] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1503	chr4	120436120	120436121	rs722667	20351715	Liu Y	2010-03-30	Mol Psychiatry	Meta-analysis of genome-wide association data of bipolar disorder and major depressive disorder.	Bipolar disorder	4,387 European and unknown ancestry cases, 6,209 European and unknown ancestry controls	NA	4q26	COLEC12, THOC1	rs722667-?	NR	7E-6				Affymetrix [1769948] (imputed)	N
1503	chr4	120449809	120449810	rs1155577	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	4q26	PDE5A, RP11-33B1.1	rs1155577-T	0.4868	3E-9		0.0217072	[0.015-0.029] unit increase	Affymetrix [~ 2500000] (imputed)	N
1504	chr4	120480233	120480234	rs11295209	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	4q26	PDE5A	rs11295209-T	0.4878	6E-10		0.02261016	[0.015-0.03] unit increase	Affymetrix [~ 2500000] (imputed)	N
1504	chr4	120509278	120509279	rs66887589	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	4q26		rs66887589-C	NR	2E-9		0.0119	[0.008-0.0158] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1504	chr4	120509278	120509279	rs66887589	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Diastolic blood pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	4q26	PDE5A	rs66887589-T	0.52	3E-15		0.215	[0.16-0.27] unit decrease	Affymetrix [~ 9800000] (imputed)	N
1504	chr4	120509278	120509279	rs66887589	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	4q26	PDE5A	rs66887589-T		2E-8		0.214	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1504	chr4	120509278	120509279	rs66887589	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	4q26	PDE5A	rs66887589-T		9E-19		0.206	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1504	chr4	120512507	120512508	rs6842674	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	4q26	PDE5A	rs6842674-T	NR	2E-8		0.0192507	[0.013-0.026] unit increase	Affymetrix [319769] (imputed)	N
1504	chr4	120516692	120516693	rs9998919	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	4q26	PDE5A	rs9998919-A	NR	2E-8		0.0194196	[0.013-0.026] unit increase	Affymetrix [319769] (imputed)	N
1504	chr4	120516692	120516693	rs9998919	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	4q26	PDE5A	rs9998919-A	NR	2E-8		0.0193389	[0.013-0.026] unit increase	Affymetrix [321169] (imputed)	N
1504	chr4	120528326	120528327	rs3733526	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 157,516 European ancestry women, up to 180,131 African American, South Asian, East Asian and Hispanic ancestry women	up to 62,368 European ancestry women	4q26	PDE5A	rs3733526-G	0.1878	5E-9		0.022	[0.015-0.029] unit increase	Affymetrix, Illumina [at least 228985]	N
1504	chr4	120528326	120528327	rs3733526	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 157,516 European ancestry women	up to 62,368 European ancestry women	4q26	PDE5A	rs3733526-G	0.1848	5E-9		0.0232	[0.015-0.031] unit increase	Affymetrix, Illumina [at least 228985]	N
1504	chr4	120528326	120528327	rs3733526	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	288,492 European ancestry individuals, up to 15,687 African American individuals, up to 29,315 South Asian ancestry individuals, up to 6,800 East Asian ancestry individuals, up to 4,075 Hispanic ancestry individuals	132,177 European ancestry individuals	4q26	PDE5A	rs3733526-G	0.1873	3E-8		0.015	[0.0097-0.0203] unit increase	Affymetrix, Illumina [at least 228985]	N
1504	chr4	120528326	120528327	rs3733526	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	288,492 European ancestry individuals	132,177 European ancestry individuals	4q26	PDE5A	rs3733526-G	0.1863	1E-9		0.0174	[0.012-0.023] unit increase	Affymetrix, Illumina [at least 228985]	N
1504	chr4	120544111	120544112	rs7672519	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q26	NR	rs7672519-T	0.490496	3E-27				Affymetrix, Illumina [24588908] (imputed)	N
1504	chr4	120551069	120551069	rs3840504	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	4q26		rs3840504-TA	NR	2E-9		0.013	[0.0089-0.0171] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
1504	chr4	120557872	120557873	rs116420214	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	4q26		rs116420214-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1504	chr4	120559869	120559870	rs2389880	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	4q26	NR	rs2389880-A	0.341223	2E-12		0.0504151	[0.036-0.064] unit increase	Affymetrix [17914406] (imputed)	N
1504	chr4	120570277	120570278	rs35581370	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	4q26	PDE5A	rs35581370-C	NR	2E-13		0.0291215	[0.021-0.037] unit increase	Affymetrix [321169] (imputed)	N
1505	chr4	120595774	120595775	rs62321172	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	4q26	PDE5A	rs62321172-A	NR	2E-14		0.0297637	[0.022-0.037] unit increase	Affymetrix [321114] (imputed)	N
1505	chr4	120601757	120601758	rs13122357	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	4q26	NR	rs13122357-G		1E-10		0.08	[0.06-0.1] unit increase	NR [NR]	N
1505	chr4	120608963	120608964	rs191377125	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	4q26	PDE5A	rs191377125-A	0.9836	1E-6		0.1697	[0.1-0.24] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1505	chr4	120612717	120612718	rs2583612	24483146	Li L	2014-02-01	BMC Genomics	Discovery of genetic biomarkers contributing to variation in drug response of cytidine analogues using human lymphoblastoid cell lines.	Response to cytadine analogues (cytosine arabinoside)	60 European ancestry lymphoblastoid cell lines, 54 African American lymphoblastoid cell lines, 60 Han Chinese ancestry lymphoblastoid cell lines	NA	4q26	NR	rs2583612-?		7E-6				Affymetrix, Illumina [1348798]	N
1505	chr4	120616804	120616805	rs2715026	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	4q26	PDE5A	rs2715026-G	0.597888	9E-9		0.017949	[0.012-0.024] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
1505	chr4	120621416	120621417	rs7682717	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	4q26		rs7682717-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1505	chr4	120627420	120627421	rs1009077	28881265	Sobalska-Kwapis M	2017-09-01	Eur J Obstet Gynecol Reprod Biol	New variants near RHOJ and C2, HLA-DRA region and susceptibility to endometriosis in the Polish population-The genome-wide association study.	Endometriosis	171 European ancestry cases, 2,934 European ancestry controls	NA	4q26	NR	rs1009077-A	0.2234	4E-6		1.783	[1.389-2.29]	Illumina [274400]	N
1505	chr4	120663648	120663649	rs749526	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	4q26	NR	rs749526-T	0.342706	2E-8		0.0400498	[0.026-0.054] unit increase	Affymetrix [17914406] (imputed)	N
1505	chr4	120675158	120675159	rs2389960	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	4q26	NR	rs2389960-C	NR	4E-9		0.0174	[0.012-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
1505	chr4	120680559	120680560	rs7676064	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	4q26	RP11-236P13.1	rs7676064-A	NR	1E-8		0.0187029	[0.012-0.025] unit decrease	Affymetrix [323123] (imputed)	N
1505	chr4	120680949	120680950	rs4447843	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	4q26	NR	rs4447843-?	NR	6E-11				Affymetrix [~ 8270000] (imputed)	N
1505	chr4	120682463	120682464	rs28378775	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	4q26	RP11-236P13.1	rs28378775-A	NR	5E-10		0.0201636	[0.014-0.027] unit increase	Affymetrix [321114] (imputed)	N
1505	chr4	120685051	120685052	rs11724232	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	4q26	RP11-236P13.1	rs11724232-C	NR	2E-9		0.0219231	[0.015-0.029] unit increase	Affymetrix [319769] (imputed)	N
1505	chr4	120685051	120685052	rs11724232	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	4q26	RP11-236P13.1	rs11724232-C	NR	6E-10		0.0226236	[0.015-0.03] unit increase	Affymetrix [319769] (imputed)	N
1505	chr4	120689916	120689917	rs62321222	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	4q26	RP11-236P13.1	rs62321222-C	NR	2E-9		0.0255732	[0.017-0.034] unit increase	Affymetrix [321169] (imputed)	N
1505	chr4	120691387	120691388	rs7666824	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	4q26	NR	rs7666824-A	0.33358	8E-9		0.013847175	[0.0091-0.0186] unit decrease	Affymetrix [93095623] (imputed)	N
1506	chr4	120717553	120717556	rs10579214	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	4q26		rs10579214-G	NR	2E-14		0.0106	[0.0079-0.0133] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1506	chr4	120719867	120719868	rs13114198	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	4q26	RP11-236P13.1	rs13114198-C	NR	4E-10		0.0214151	[0.015-0.028] unit decrease	Affymetrix [321016] (imputed)	N
1506	chr4	120726934	120726935	rs57155805	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	4q26	RP11-236P13.1	rs57155805-G	NR	4E-9		0.0169653	[0.011-0.023] unit increase	Affymetrix [321114] (imputed)	N
1506	chr4	120741241	120741242	rs7695544	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	4q26	RP11-236P13.1	rs7695544-A	NR	5E-9		0.0176653	[0.012-0.024] unit decrease	Affymetrix [321016] (imputed)	N
1506	chr4	120741966	120741967	rs2389922	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	4q26	NR	rs2389922-?	NR	7E-11				Affymetrix [~ 8270000] (imputed)	N
1506	chr4	120742257	120742258	rs13151574	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	4q26	RP11-236P13.1	rs13151574-A	NR	1E-8		0.0308938	[0.02-0.041] unit decrease	Affymetrix [321016] (imputed)	N
1506	chr4	120756094	120756095	rs2389919	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	4q26		rs2389919-?	NR	4E-19				NR [~ 8900000] (imputed)	N
1506	chr4	120806126	120806127	rs62319710	33213513	Ibanez L	2020-11-19	Acta Neuropathol Commun	Functional genomic analyses uncover APOE-mediated regulation of brain and cerebrospinal fluid beta-amyloid levels in Parkinson disease.	Alpha synuclein levels (MTAG)	1744 European ancestry individuals	NA	4q26	NR	rs62319710-G	NR	5E-6		0.02878494	[0.016-0.041] unit decrease	Illumina [NR] (imputed)	N
1506	chr4	120816582	120816583	rs72684540	34417961	Guo D	2021-08-21	Biol Trace Elem Res	Preliminary study of genome-wide association identifies novel susceptibility genes for serum mineral elements in the Chinese Han population.	Calcium levels	587 Han Chinese ancestry individuals	NA	4q26		rs72684540-?	NR	3E-6		0.058	[-0.7946-0.9106] unit increase	Affymetrix [6423076] (imputed)	N
1507	chr4	120878534	120878535	rs149029090	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	4q27	NR	rs149029090-?	NR	3E-9				Illumina [7760689] (imputed)	N
1507	chr4	120900281	120900282	rs13134800	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	20,917 European ancestry cases, 440,906 European ancestry controls, 14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	4q27		rs13134800-C	NR	2E-9		0.0565	[0.038-0.075] unit decrease	Affymetrix, Illumina [25841367] (imputed)	N
1507	chr4	120900281	120900282	rs13134800	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	4q27	LINC02502, MAD2L1	rs13134800-?	NR	1E-14		0.0413897	[0.031-0.052] unit decrease	Illumina [4804024] (imputed)	N
1507	chr4	120901335	120901336	rs11723436	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	4q27	intergenic	rs11723436-A	0.6947	6E-14		0.0519	[0.038-0.065] unit decrease	NR [8041861] (imputed)	N
1507	chr4	120901525	120901526	rs12511880	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	4q27	MYOZ2, USP53, FABP2, PDE5A, MAD2L1	rs12511880-?		5E-18				Affymetrix, Illumina [NR] (imputed)	N
1507	chr4	120908702	120908703	rs13143759	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	4q27	NR	rs13143759-?	NR	7E-7		0.106208	[0.064-0.148] unit decrease	NR [13958389] (imputed)	N
1507	chr4	120908702	120908703	rs13143759	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	4q27	NR	rs13143759-A		3E-12		0.08	[0.06-0.1] unit increase	NR [NR]	N
1507	chr4	120909500	120909501	rs7678555	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	4q27	MAD2L1	rs7678555-C	0.280094	2E-7		1.04	[1.03-1.06]	NR [8126035] (imputed)	N
1507	chr4	120909500	120909501	rs7678555	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	4q27	intergenic	rs7678555-A	0.7166	1E-14		0.0486	[0.036-0.061] unit decrease	Affymetrix [at least 7947838] (imputed)	N
1507	chr4	120909500	120909501	rs7678555	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	4q27	intergenic	rs7678555-A	0.717	3E-15		0.056	[0.042-0.07] unit decrease	Affymetrix [7947838] (imputed)	N
1507	chr4	120909500	120909501	rs7678555	28714975	Nelson CP	2017-07-17	Nat Genet	Association analyses based on false discovery rate implicate new loci for coronary artery disease.	Coronary artery disease (myocardial infarction, percutaneous transluminal coronary angioplasty, coronary artery bypass grafting, angina or chromic ischemic heart disease)	18,467 European and unknown ancestry cases, 45,264 European and unknown ancestry controls	57,347 European and unknown ancestry cases, 219,521 European and unknown ancestry controls	4q27	PDE5A, MAD2L1	rs7678555-C	0.279	1E-8		1.052	[1.034-1.070]	Affymetrix [9149595] (imputed)	N
1507	chr4	120909500	120909501	rs7678555	28714974	Klarin D	2017-07-17	Nat Genet	Genetic analysis in UK Biobank links insulin resistance and transendothelial migration pathways to coronary artery disease.	Coronary artery disease	4,831 European ancestry cases, 115,455 European ancestry controls	up to 60,801 European and unknown ancestry cases, up to 123,504 European and unknown ancestry controls	4q27	MAD2L1	rs7678555-C	0.29	3E-8		1.06	[1.04-1.08]	Affymetrix [9061845] (imputed)	N
1507	chr4	120910421	120910421	rs70948317	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia	11,197 European ancestry low myopic cases, 21,416 European ancestry emmetropia controls	NA	4q27	NR	rs70948317-?	NR	3E-6		0.0806636	[0.047-0.115] unit decrease	NR [13958389] (imputed)	N
1507	chr4	120917345	120917346	rs111346133	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	4q27		rs111346133-?	NR	7E-9				NR [~ 8900000] (imputed)	N
1507	chr4	120923476	120923477	rs183838363	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	4q27	NR	rs183838363-?	NR	3E-6		0.5231	[0.32-0.73] unit increase	Illumina [at least 560000] (imputed)	N
1507	chr4	120936580	120936581	rs1847331	32469254	Matsunaga H	2020-05-29	Circ Genom Precis Med	Transethnic Meta-analysis of Genome-wide Association Studies Identifies Three New Loci and Characterizes Population-specific Differences for Coronary Artery Disease.	Coronary artery disease	15,302 Japanese ancestry cases, 76,014 European and East Asian ancestry cases, 36,140 Japanese ancestry controls, 264,785 European and East Asian ancestry controls	NA	4q27	PDE5A, MAD2L1	rs1847331-G	0.27	2E-8		1.05	[1.02-1.08]	Illumina [5167567] (imputed)	N
1507	chr4	120962384	120962385	rs1845344	21326311	Bhatnagar P	2011-02-17	J Hum Genet	Genome-wide association study identifies genetic variants influencing F-cell levels in sickle-cell patients.	F-cell distribution in sickle cell anaemia	440 African American individuals	NA	4q27	MAD2L1	rs1845344-T	0.27	7E-6		0.97	[0.56-1.38] unit increase	Illumina [660740]	N
1508	chr4	121041285	121041286	rs1493682	22174851	Lingappa JR	2011-12-12	PLoS One	Genomewide association study for determinants of HIV-1 acquisition and viral set point in HIV-1 serodiscordant couples with quantified virus exposure.	HIV-1 viral setpoint	496 African ancestry cases	NA	4q27	MAD2L1	rs1493682-?	NR	6E-6				Illumina [990115]	N
1509	chr4	121228153	121228154	rs2662760	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	4q27		rs2662760-C	0.47	4E-12		6.95	z score increase	Affymetrix [9061022] (imputed)	N
1510	chr4	121253863	121253864	rs191444263	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	4q27	NR	rs191444263-?	NR	4E-6		0.5256	[0.31-0.75] unit decrease	Illumina [at least 560000] (imputed)	N
1511	chr4	121398154	121398155	rs13108044	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Yeast infection	52,218 European ancestry cases, 10,235 European ancestry controls	NA	4q27	NR	rs13108044-?	NR	4E-6		0.0586	[0.034-0.083] unit increase	Illumina [at least 560000] (imputed)	N
1511	chr4	121437814	121437815	rs72672568	33841421	Li J	2021-03-25	Front Immunol	Variants at the MHC Region Associate With Susceptibility to <i>Clostridioides difficile</i> Infection: A Genome-Wide Association Study Using Comprehensive Electronic Health Records.	Clostridioides difficle infection	1,160 European ancestry cases, 14,144 European ancestry controls	NA	4q27	AC073475.1	rs72672568-C	0.0556	3E-6		1.45	[1.27-1.67]	Illumina [64973696] (imputed)	N
1511	chr4	121445049	121445050	rs6828799	27629369	Gao J	2016-09-15	Neuropsychopharmacology	Genome-Wide Association Study of Loneliness Demonstrates a Role for Common Variation.	Loneliness (multivariate analysis)	8,490 European ancestry individuals, 1,228 African American individuals, 867 Hispanic American individuals, 175 individuals	NA	4q27	MAD2L1, PRDM5	rs6828799-?	NR	4E-6	(EA)			Illumina [7205781] (imputed)	N
1511	chr4	121479397	121479398	rs6856719	34624637	Zainul Abidin FN	2021-09-21	Neuroimage Clin	Glucose hypometabolism in the Auditory Pathway in Age Related Hearing Loss in the ADNI cohort.	Age related hearing loss-related regional glucose metabolism (Cochlear nucleus)	228 European ancestry cases, 587 European ancestry controls	NA	4q27		rs6856719-?	NR	7E-6		0.414	[0.24-0.59] unit decrease	Illumina [5082878] (imputed)	N
1512	chr4	121513214	121513215	rs10017284	21326311	Bhatnagar P	2011-02-17	J Hum Genet	Genome-wide association study identifies genetic variants influencing F-cell levels in sickle-cell patients.	F-cell distribution in sickle cell anaemia	440 African American individuals	NA	4q27	PRDM5	rs10017284-G	0.43	6E-6		0.85	[0.50-1.20] unit decrease	Illumina [660740]	N
1512	chr4	121566606	121566607	rs4543139	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	4q27		rs4543139-T	0.2	9E-16		8.04	z score increase	Affymetrix [9061022] (imputed)	N
1512	chr4	121574205	121574206	rs72674400	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	4q27	NR	rs72674400-T	0.2407	1E-8				NR [9056863] (imputed)	N
1512	chr4	121574206	121574207	rs72674402	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	4q27		rs72674402-G	0.2	4E-9		5.88	z score increase	Affymetrix [9061022] (imputed)	N
1512	chr4	121574206	121574207	rs72674402	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	4q27	NR	rs72674402-G	0.2406	8E-10				NR [9056863] (imputed)	N
1512	chr4	121584281	121584282	rs11729628	34450027	Boer CG	2021-08-24	Cell	Deciphering osteoarthritis genetics across 826,690 individuals from 9 populations.	Osteoarthritis	175,803 European ancestry cases, 644,862 European ancestry controls, 1,265 Japanese ancestry cases, 449 Southern Chinese ancestry cases, 3,330 Japanese ancestry controls, 981 Southern Chinese ancestry controls	NA	4q27		rs11729628-T	0.2393	5E-9		0.96918476	[0.959169178-0.979304953]	Affymetrix, Illumina [NR] (imputed)	N
1512	chr4	121604433	121604434	rs1496255	29095316	Suh Y	2017-11-01	Medicine (Baltimore)	Genome-wide association study for genetic variants related with maximal voluntary ventilation reveals two novel genomic signals associated with lung function.	Lung function (maximal voluntary ventilation)	8,842 Korean ancestry individuals	NA	4q27	intergenic	rs1496255-?	NR	2E-9		7.41	unit increase	Affymetrix [2476376] (imputed)	N
1512	chr4	121604433	121604434	rs1496255	29095316	Suh Y	2017-11-01	Medicine (Baltimore)	Genome-wide association study for genetic variants related with maximal voluntary ventilation reveals two novel genomic signals associated with lung function.	Lung function (forced vital capacity)	8,842 Korean ancestry individuals	NA	4q27	intergenic	rs1496255-?	NR	2E-9		5.5	[NR] unit increase	Affymetrix [2476376] (imputed)	N
1512	chr4	121604433	121604434	rs1496255	29095316	Suh Y	2017-11-01	Medicine (Baltimore)	Genome-wide association study for genetic variants related with maximal voluntary ventilation reveals two novel genomic signals associated with lung function.	Lung function (forced expiratory volume in 1 second)	8,842 Korean ancestry individuals	NA	4q27	intergenic	rs1496255-?	NR	4E-9		6.31	unit increase	Affymetrix [2476376] (imputed)	N
1512	chr4	121622318	121622318	rs35533749	33106475	Li QS	2020-10-26	Transl Psychiatry	Genome-wide association studies of antidepressant class response and treatment-resistant depression.	Response to norepinephrine-dopamine reuptake inhibitors (responders vs non-responders)	3,971 European ancestry responders, 3,512 European ancestry non-responders	NA	4q27	NR	rs35533749-?	NR	6E-6		1.389	NR	Illumina [at least 560000] (imputed)	N
1512	chr4	121627112	121627113	rs724818	26926045	Adhikari K	2016-03-01	Nat Commun	A genome-wide association scan in admixed Latin Americans identifies loci influencing facial and scalp hair features.	Monobrow thickness	2,922 Latin American individuals	NA	4q27	PRDM5	rs724818-?	NR	4E-6				Illumina [9143600] (imputed)	N
1513	chr4	121643238	121643239	rs35021943	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical thickness	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	4q27	NR	rs35021943-A	0.7626	1E-7	(average)	0.003111379	[0.002-0.0043] unit decrease	Affymetrix, Illumina [NR]	N
1513	chr4	121643238	121643239	rs35021943	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	4q27	NR	rs35021943-?	NR	4E-9	(grey matter)			NR [9227495] (imputed)	N
1513	chr4	121643238	121643239	rs35021943	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	4q27	NR	rs35021943-C	0.246	5E-8		0.0068665	[0.0044-0.0093] unit decrease	NR [9732723] (imputed)	N
1513	chr4	121648165	121648166	rs138978821	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	4q27	NR	rs138978821-?	NR	3E-9				Illumina [7760689] (imputed)	N
1513	chr4	121650474	121650475	rs180976345	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q27	NR	rs180976345-G	0.01045	9E-14	(DDB1)	0.3292	NR unit increase	Illumina [1671387] (imputed)	N
1513	chr4	121692080	121692081	rs5861490	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Sensorimotor dexterity	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	4q27	PRDM5	rs5861490-A	NR	5E-6		0.8205927	[0.49-1.15] unit decrease	Illumina [> 6200000] (imputed)	N
1513	chr4	121765787	121765788	rs4833687	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	4q27	NR	rs4833687-C	0.7415	3E-9		0.0267	[0.018-0.036] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1514	chr4	121772134	121772135	rs72680432	33491795	Timmer T	2021-01-25	Vox Sang	Genetic determinants of ferritin, haemoglobin levels and haemoglobin trajectories: results from Donor InSight.	Hemoglobin levels	2,649 European ancestry individuals	NA	4q27	PRDM5	rs72680432-G	0.053	8E-6		0.16	[0.09-0.23] unit increase	Affymetrix [7435577] (imputed)	N
1514	chr4	121801789	121801790	rs180730	17903298	Meigs JB	2007-09-19	BMC Med Genet	Genome-wide association with diabetes-related traits in the Framingham Heart Study.	Fasting plasma glucose	1,027 individuals	NA	4q27	PRDM5	rs180730-?	NR	6E-6	(tFPG)			Affymetrix [70897]	N
1514	chr4	121801789	121801790	rs180730	17903298	Meigs JB	2007-09-19	BMC Med Genet	Genome-wide association with diabetes-related traits in the Framingham Heart Study.	Fasting plasma glucose	1,027 individuals	NA	4q27	PRDM5	rs180730-?	NR	5E-6	(FPG)			Affymetrix [70897]	N
1514	chr4	121855570	121855571	rs1114026	33491795	Timmer T	2021-01-25	Vox Sang	Genetic determinants of ferritin, haemoglobin levels and haemoglobin trajectories: results from Donor InSight.	Hemoglobin levels	2,649 European ancestry individuals	NA	4q27	PRDM5	rs1114026-T	0.864	9E-6		0.11	[0.06-0.15] unit decrease	Affymetrix [7435577] (imputed)	N
1514	chr4	121861041	121861042	rs149902245	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q27	NR	rs149902245-G	0.0122	2E-9	(AGXT)	6.909	NR unit increase	Illumina [1671387] (imputed)	N
1514	chr4	121861041	121861042	rs149902245	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q27	NR	rs149902245-G	0.0122	1E-9	(PIPOX)	0.368	NR unit increase	Illumina [1671387] (imputed)	N
1514	chr4	121862500	121862501	rs10018902	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	4q27	PRDM5	rs10018902-A	0.0080	1E-6	(Weight z-score change )	0.04	[NR] SD/y increase	Illumina [899892]	N
1515	chr4	121998103	121998104	rs7694450	33692830	Indencleef K	2021-02-22	Front Genet	The Intersection of the Genetic Architectures of Orofacial Clefts and Normal Facial Variation.	Facial morphology traits (59 NSCL/P endophenotypic segments)	8,246 European ancestry individuals	NA	4q27	NR	rs7694450-?	NR	2E-9	(Quadrant I (Philtrum), Segment 39)	0.029820675	NR unit increase	NR [7417619] (imputed)	N
1515	chr4	121998103	121998104	rs7694450	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 9)	3,566 European ancestry individuals	4,680 European ancestry individuals	4q27		rs7694450-A	0.434738666	1E-8				Illumina [7417619] (imputed)	N
1516	chr4	122028783	122028784	rs1397643	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	4q27	NR	rs1397643-?	NR	7E-7				Illumina [at least 7383741] (imputed)	N
1516	chr4	122119448	122119449	rs17051321	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	4q27	TNIP3	rs17051321-T	NR	1E-10		1.0843635	NR	Affymetrix, Illumina [8278136] (imputed)	N
1516	chr4	122134098	122134099	rs896623	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	4q27	NR	rs896623-?	NR	2E-6				Illumina [at least 7383741] (imputed)	N
1517	chr4	122218976	122218977	rs56272075	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Lateral ventricle temporal horn volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	4q27	NR	rs56272075-?		5E-7				Illumina [4322238] (imputed)	N
1517	chr4	122257941	122257942	rs4558890	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	4q27	NR	rs4558890-A	0.021564	2E-10		0.042568	[0.03-0.056] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
1517	chr4	122260041	122260042	rs17051338	34074324	Wan JY	2021-06-01	Diabetol Metab Syndr	Genome-wide association analysis of metabolic syndrome quantitative traits in the GENNID multiethnic family study.	Weight	281 African American individuals from 73 families, 516 European ancestry individuals from 75 families, 125 Japanese American individuals from 15 families, 598 Mexican American individuals from 96 families	NA	4q27	QRFPR	rs17051338-G	0.012	5E-8	(East Asian)	2.13	[0.97-3.29] unit increase	Illumina [up to 13042663] (imputed)	N
1518	chr4	122314039	122314040	rs7679475	25936594	Tomer Y	2015-04-27	J Autoimmun	Genome wide identification of new genes and pathways in patients with both autoimmune thyroiditis and type 1 diabetes.	Type 1 diabetes and autoimmune thyroid diseases	346 European ancestry cases, 727 European ancestry controls	185 European ancestry cases, 340 European ancestry controls	4q27	GPR103	rs7679475-A	NR	4E-10		1.6198		Illumina [514008]	N
1518	chr4	122316971	122316972	rs144429904	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q27	NR	rs144429904-A	0.0122	2E-15	(UGT1A4)	0.3049	NR unit increase	Illumina [1671387] (imputed)	N
1518	chr4	122317430	122317431	rs7665234	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris color (b* coordinate)	329 South Asian ancestry individuals		4q27	intergenic	rs7665234-G	0.035	7E-6		1.012	[0.58-1.45] unit decrease	Illumina [640625] (imputed)	N
1519	chr4	122446155	122446156	rs4833740	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	4q27	GPR103	rs4833740-?	NR	2E-6	(cyclic adenosine monophosphate)	0.29072514	[0.17-0.41] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1519	chr4	122534577	122534578	rs4833750	29703947	Jawinski P	2018-04-27	Mol Psychiatry	Human brain arousal in the resting state: a genome-wide association study.	Resting-state electroencephalogram vigilance	1,877 European ancestry individuals	NA	4q27	ANXA5	rs4833750-A	0.889	2E-6	(Slope index)	0.207	[0.12-0.29] unit decrease	Affymetrix [8042262] (imputed)	N
1519	chr4	122546487	122546488	rs4833226	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mononucleosis	17,457 European ancestry cases, 68,446 European ancestry controls	NA	4q27	NR	rs4833226-?	NR	8E-6		0.349	[0.2-0.5] unit decrease	Illumina [at least 560000] (imputed)	N
1520	chr4	122578721	122578722	rs7666178	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	4q27		rs7666178-?	NR	9E-8				NR [~ 8900000] (imputed)	N
1520	chr4	122583711	122583712	rs541590009	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Alcohol consumption x experiences in childhood (felt loved by family member) interaction	41,648 European ancestry individuals	NA	4q27		rs541590009-?	NR	3E-8		1.5647	[1.01-2.12] unit decrease	Affymetrix [NR] (imputed)	N
1520	chr4	122590443	122590444	rs116573968	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Alcohol consumption x experiences in childhood (felt loved by family member) interaction	41,648 European ancestry individuals	NA	4q27		rs116573968-?	NR	5E-8		1.5249	[0.98-2.07] unit decrease	Affymetrix [NR] (imputed)	N
1520	chr4	122607177	122607178	rs55645543	21685187	Siedlinski M	2011-06-16	Thorax	Genome-wide association study of smoking behaviours in patients with COPD.	Age at smoking initiation in chronic obstructive pulmonary disease	3,397 European ancestry cases	NA	4q27	ANXA5	rs55645543-C	0.02	5E-7		0.228	unit increase	Illumina [~ 6300000] (imputed)	N
1520	chr4	122608257	122608258	rs141005242	30954325	Kamboh MI	2019-03-11	Neurobiol Aging	Population-based genome-wide association study of cognitive decline in older adults free of dementia: identification of a novel locus for the attention domain.	Age-related cognitive decline (language) (slope of z-scores)	1,145 European ancestry individuals	NA	4q27	ANXA5	rs141005242-T	0.08	5E-7		0.38	unit increase	Illumina [5600000] (imputed)	N
1520	chr4	122617492	122617493	rs2306413	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	4q27	NR	rs2306413-?	NR	5E-8				Affymetrix [~ 8270000] (imputed)	N
1520	chr4	122622118	122622119	rs55838243	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	4q27	ANXA5	rs55838243-G	NR	1E-9		0.0180025	[0.012-0.024] unit decrease	Affymetrix [321169] (imputed)	N
1520	chr4	122622599	122622600	rs9995019	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	4q27	ANXA5	rs9995019-C	NR	5E-9		0.017147	[0.011-0.023] unit decrease	Affymetrix [319769] (imputed)	N
1520	chr4	122624064	122624065	rs7680787	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	4q27	ANXA5	rs7680787-C	NR	6E-9		0.0170914	[0.011-0.023] unit decrease	Affymetrix [319769] (imputed)	N
1520	chr4	122624064	122624065	rs7680787	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	4q27	NR	rs7680787-T	0.64	4E-15		0.014	[0.01-0.018] unit increase	Affymetrix [2446094] (imputed)	N
1520	chr4	122624064	122624065	rs7680787	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	4q27	NR	rs7680787-T	0.64	5E-8				Affymetrix [2446094] (imputed)	N
1520	chr4	122624064	122624065	rs7680787	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	4q27	NR	rs7680787-T	0.6476	1E-14		0.0138	[0.01-0.017] unit increase	NR [~ 27400000] (imputed)	N
1520	chr4	122626189	122626190	rs10024899	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	4q27	NR	rs10024899-?	NR	9E-12				Affymetrix [~ 8270000] (imputed)	N
1520	chr4	122626189	122626190	rs10024899	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	4q27		rs10024899-?	NR	9E-12				NR [~ 8900000] (imputed)	N
1520	chr4	122660249	122660250	rs2706785	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	4q27	TMEM155	rs2706785-G	0.05	2E-8		1.13	[1.08-1.17]	Affymetrix, Illumina [NR] (imputed)	N
1520	chr4	122660249	122660250	rs2706785	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	4q27	TMEM155	rs2706785-G	0.0487	1E-7	(EA)	0.1282	[0.081-0.176] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1520	chr4	122665513	122665514	rs7659604	17554300	Wellcome Trust Case Control Consortium	2007-06-07	Nature	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Type 2 diabetes	1,924 European ancestry cases, 2,938 European ancestry controls	(see Zeggini 2007)	4q27	NR	rs7659604-T	0.38	9E-6		1.35	[1.19-1.54]	Affymetrix [469557]	N
1521	chr4	122687237	122687238	rs13108419	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular volume	108,256 Japanese ancestry individuals	NA	4q27	PP12613	rs13108419-?	NR	1E-8		0.02454	[0.016-0.033] unit increase novel	Illumina [6108953] (imputed)	N
1521	chr4	122695135	122695136	rs4833235	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	4q27		rs4833235-A	0.550164	2E-9		0.0217354	[0.015-0.029] unit increase	Illumina [13476266] (imputed)	N
1521	chr4	122695684	122695685	rs11734075	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	4q27		rs11734075-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1521	chr4	122695684	122695685	rs11734075	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	4q27	AC079341.1	rs11734075-T	NR	3E-11		0.0188111	[0.013-0.024] unit decrease	Affymetrix [321016] (imputed)	N
1521	chr4	122695684	122695685	rs11734075	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	121,047 East Asian ancestry individuals	NA	4q27	NR	rs11734075-C	0.451429	1E-10		0.026324	[0.018-0.034] SD units decrease	Affymetrix, Illumina [16286195] (imputed)	N
1521	chr4	122713862	122713863	rs6821305	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	4q27		rs6821305-C	NR	1E-11		0.0144	[0.01-0.019] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1521	chr4	122713862	122713863	rs6821305	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	4q27	EXOSC9	rs6821305-C	NR	3E-12		0.0200235	[0.014-0.026] unit increase	Affymetrix [321016] (imputed)	N
1521	chr4	122713862	122713863	rs6821305	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	4q27	intergenic	rs6821305-A	0.601	3E-26		0.0204	[0.017-0.024] unit decrease	Affymetrix [18391927] (imputed)	N
1521	chr4	122721411	122721412	rs56077950	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	4q27		rs56077950-?	NR	4E-44				NR [~ 8900000] (imputed)	N
1521	chr4	122725302	122725303	rs6830443	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q27	NR	rs6830443-A	0.419339	2E-16				Affymetrix, Illumina [24332387] (imputed)	N
1521	chr4	122729413	122729417	rs33964027	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	4q27	EXOSC9	rs33964027-C	0.3967	9E-21		0.03376425	[0.027-0.041] unit increase	Affymetrix [~ 2500000] (imputed)	N
1521	chr4	122729413	122729417	rs33964027	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	4q27	EXOSC9	rs33964027-C	0.3967	6E-18		0.03129383	[0.024-0.038] unit increase	Affymetrix [~ 2500000] (imputed)	N
1521	chr4	122732215	122732216	rs5004355	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	4q27	EXOSC9	rs5004355-G	0.395839	5E-14		0.016957607	[0.013-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1521	chr4	122732215	122732216	rs5004355	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	4q27	NR	rs5004355-G	0.393429	1E-15		0.015195	[0.011-0.019] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1521	chr4	122732215	122732216	rs5004355	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	4q27		rs5004355-?	NR	1E-15				NR [~ 8900000] (imputed)	N
1521	chr4	122736052	122736053	rs6845901	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q27	NR	rs6845901-C	0.415573	1E-79				Affymetrix, Illumina [24246363] (imputed)	N
1521	chr4	122736052	122736053	rs6845901	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	4q27	NR	rs6845901-C	0.393398	4E-73		0.033582	[0.03-0.037] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
1521	chr4	122739182	122739183	rs3217772	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	4q27	CCNA2	rs3217772-G	0.395813	3E-51		0.033995762	[0.03-0.038] unit increase	Affymetrix [93095623] (imputed)	N
1521	chr4	122741342	122741343	rs769246	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	4q27		rs769246-?	NR	8E-8				NR [~ 8900000] (imputed)	N
1521	chr4	122745728	122745729	rs1507996	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	4q27	BBS7	rs1507996-T	NR	1E-9		0.0199037	[0.014-0.026] unit increase	Affymetrix [321016] (imputed)	N
1521	chr4	122748995	122748996	rs1048433	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	4q27		rs1048433-C	NR	3E-15		0.0138	[0.01-0.017] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
1521	chr4	122751060	122751061	rs13152701	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	4q27		rs13152701-A	NR	2E-21		0.0124	[0.0099-0.0149] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1521	chr4	122754458	122754459	rs143700362	31376382	Yang C	2019-07-31	J Invest Dermatol	Exome-Wide Rare Loss-of-Function Variant Enrichment Study of 21,347 Han Chinese Individuals Identifies Four Susceptibility Genes for Psoriasis.	Psoriasis	10,668 Chinese ancestry cases, 10,679 Chinese ancestry controls	NA	4q27	BBS7	rs143700362-?		3E-19		0.0334		NR [66000]	N
1521	chr4	122770676	122770677	rs9995319	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	4q27		rs9995319-?	NR	1E-62				NR [~ 8900000] (imputed)	N
1521	chr4	122776066	122776067	rs4833236	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	4q27	NR	rs4833236-G	0.395134	5E-64		0.033246	[0.029-0.037] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
1521	chr4	122791600	122791601	rs2271176	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	4q27		rs2271176-C	0.558049	5E-10		0.0228571	[0.016-0.03] unit increase	Illumina [13476299] (imputed)	N
1521	chr4	122791600	122791601	rs2271176	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q27	NR	rs2271176-C	0.420085	5E-72				Affymetrix, Illumina [20825802] (imputed)	N
1521	chr4	122791600	122791601	rs2271176	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	119,629 East Asian ancestry individuals	NA	4q27	NR	rs2271176-G	0.443442	1E-11		0.028541	[0.02-0.037] SD units decrease	Affymetrix, Illumina [16286228] (imputed)	N
1521	chr4	122795115	122795116	rs35661893	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Squamous cell lung carcinoma	8,350 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	4q27	NR	rs35661893-C	0.55	5E-7		0.9	[0.86-0.94]	NR [NR] (imputed)	N
1521	chr4	122795115	122795116	rs35661893	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Non-small cell lung cancer	27,120 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	4q27	NR	rs35661893-C	0.55	4E-6		0.93	[0.91-0.96]	NR [NR] (imputed)	N
1521	chr4	122796916	122796917	rs67775544	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	4q27		rs67775544-A	NR	5E-51		0.0304	[0.026-0.034] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
1521	chr4	122796916	122796917	rs67775544	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	4q27		rs67775544-G	0.603	8E-44		0.16	[-0.18--0.13] % decrease	Affymetrix [NR] (imputed)	N
1521	chr4	122796916	122796917	rs67775544	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	4q27	RP11-63B13.1, TRPC3	rs67775544-A	0.395117	2E-58		0.036462	[0.032-0.041] unit increase	Affymetrix [93095623] (imputed)	N
1521	chr4	122798412	122798413	rs35495505	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	4q27		rs35495505-C	NR	2E-52		0.0309	[0.027-0.035] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
1521	chr4	122798412	122798413	rs35495505	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	4q27	RP11-63B13.1, TRPC3	rs35495505-C	0.394566	2E-58		0.036911592	[0.032-0.041] unit increase	Affymetrix [93095623] (imputed)	N
1521	chr4	122798412	122798413	rs35495505	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	4q27	RP11-63B13.1, TRPC3	rs35495505-C	0.394458	6E-57		0.03687578	[0.032-0.041] unit increase	Affymetrix [93095623] (imputed)	N
1522	chr4	122901630	122901631	rs1358234	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q27	NR	rs1358234-C	0.2596	1E-8	(CAND1)	0.0311	NR unit increase	Illumina [1671387] (imputed)	N
1522	chr4	122921044	122921045	rs17643636	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	4q27	NR	rs17643636-?	NR	2E-6	(Native Hawaiian)	1.1347	[NR] unit increase	Illumina [up to 11892802] (imputed)	N
1523	chr4	122949326	122949327	rs10016562	26030696	Cho MH	2015-06-01	Am J Respir Crit Care Med	A Genome-Wide Association Study of Emphysema and Airway Quantitative Imaging Phenotypes.	Emphysema imaging phenotypes	5,385 European ancestry chronic obstructive pulmonary disease cases, 901 African American chronic obstructive pulmonary disease cases, 3,613 European ancestry controls, 2,132 African American controls	NA	4q27	TRPC3	rs10016562-T	NR	1E-6	(Perc15, All)	1.6	[0.62-2.58] unit increase	Illumina [7600000] (imputed)	N
1523	chr4	122950068	122950069	rs13140744	26030696	Cho MH	2015-06-01	Am J Respir Crit Care Med	A Genome-Wide Association Study of Emphysema and Airway Quantitative Imaging Phenotypes.	Emphysema imaging phenotypes	5,385 European ancestry chronic obstructive pulmonary disease cases, 901 African American chronic obstructive pulmonary disease cases, 3,613 European ancestry controls, 2,132 African American controls	NA	4q27	TRPC3	rs13140744-T	NR	9E-7	(Perc15, Cases)	2.2	[0.95-3.45] unit decrease	Illumina [7600000] (imputed)	N
1523	chr4	122963343	122963344	rs13145650	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	4q27		rs13145650-T	0.917	9E-12		0.0173	[0.012-0.022] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1523	chr4	122979437	122979438	rs114748586	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	4q27		rs114748586-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1523	chr4	122983123	122983124	rs149194562	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	4q27		rs149194562-A	0.634559	4E-13		0.017399985	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1523	chr4	123005533	123005534	rs10021288	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	4q27	NR	rs10021288-?	NR	8E-19				Affymetrix [~ 8270000] (imputed)	N
1523	chr4	123005533	123005534	rs10021288	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	4q27	ADAD1, IL2, KIAA1109	rs10021288-A	0.243789	4E-15		1.0575192	[1.04-1.07]	Affymetrix [8274727] (imputed)	N
1523	chr4	123009732	123009733	rs3115229	28584135	Chaturvedi S	2017-06-05	Blood	Genome-wide association study to identify variants associated with acute severe vaso-occlusive pain in sickle cell anemia.	Vaso-occlusive pain in sickle-cell anemia	359 African ancestry individuals, 934 African ancestry children		4q27	TENR, KIAA1109, IL2, IL21	rs3115229-?	NR	6E-8				Illumina [1098907] (imputed)	N
1523	chr4	123010586	123010587	rs13132933	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Inflammatory skin disease	2,079 European ancestry atopic dermatitis cases, 4,212 European ancestry psoriasis cases, 11,899 European ancestry controls	NA	4q27	RN7SL335P	rs13132933-?	NR	1E-7	(Atopic dermatitis)			Affymetrix, Illumina [~ 5200000]	N
1523	chr4	123026868	123026869	rs6534338	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	4q27	Intergenic	rs6534338-T	0.3021	5E-10	(MTAG)	0.0112	[0.0077-0.0147] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1523	chr4	123026868	123026869	rs6534338	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	4q27		rs6534338-T	0.3034	1E-11		0.0103	[0.0074-0.0132] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1523	chr4	123026868	123026869	rs6534338	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	4q27	Intergenic	rs6534338-T	0.3034	6E-12	(MTAG)	0.0098	[0.0071-0.0125] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1523	chr4	123030582	123030583	rs62323874	34785669	Grosche S	2021-11-16	Nat Commun	Rare variant analysis in eczema identifies exonic variants in DUSP1, NOTCH4 and SLC9A4.	Eczema	20,016 European ancestry cases, 380,433 European ancestry controls	NA	4q27		rs62323874-A	0.0778	2E-6		1.1		Affymetrix, Illumina [9397031] (imputed)	N
1523	chr4	123032355	123032356	rs141154688	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	4q27		rs141154688-C	0.081568	6E-21		0.039365172	[0.031-0.048] unit increase	Affymetrix [93095623] (imputed)	N
1523	chr4	123032355	123032356	rs141154688	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	4q27		rs141154688-C	0.081538	1E-18		0.036690556	[0.029-0.045] unit increase	Affymetrix [93095623] (imputed)	N
1523	chr4	123032640	123032641	rs7666843	34454985	Sliz E	2021-08-26	J Allergy Clin Immunol	Uniting biobank resources reveals novel genetic pathways modulating susceptibility for atopic dermatitis.	Atopic dermatitis	22,474 European ancestry cases, 774,187 European ancestry controls	NA	4q27	NR	rs7666843-t	0.0942	6E-11		0.89	[0.86-0.92]	Affymetrix, Illumina [16201029] (imputed)	N
1523	chr4	123038294	123038295	rs62323881	26546613	Gutierrez-Achury J	2016-01-01	Hum Mol Genet	Functional implications of disease-specific variants in loci jointly associated with coeliac disease and rheumatoid arthritis.	Celiac disease and Rheumatoid arthritis	371 South Asian ancestry celiac disease cases, 3,138 European ancestry celiac disease cases,  4,418 European ancestry rheumatoid arthritis cases,  509 South Asian ancestry celiac disease controls, 2,473 European ancestry celiac disease controls, 3,300 European ancestry rheumatoid arthritis controls, 8,872 celiac disease cases, 9,401 rheumatoid arthritis cases, 4,845 celiac disease controls, 9,627 rheumatoid arthritis controls	NA	4q27	IL2-IL21, TRPC3, KIAA1109	rs62323881-?	NR	6E-9		1.16		Illumina [109572]	N
1523	chr4	123041470	123041471	rs78560100	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	4q27	NR	rs78560100-?	NR	3E-19	(conditional)			Affymetrix [15688218] (imputed)	N
1523	chr4	123055701	123055701	rs560026225	30552067	Shrine N	2018-12-11	Lancet Respir Med	Moderate-to-severe asthma in individuals of European ancestry: a genome-wide association study.	Asthma (moderate or severe)	5,135 European ancestry cases, 25,675 European ancestry controls	5,414 European ancestry cases, 21,471 European ancestry controls	4q27	KIAA1109	rs560026225-GATT	0.236	3E-9		1.12	[1.08-1.16]	Affymetrix [33771858] (imputed)	N
1523	chr4	123068052	123068053	rs77937677	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	4q27	TRPC3, KIAA1109	rs77937677-G	NR	4E-6		1.47781	[0.85-2.1] unit decrease	Illumina [at least 950000] (imputed)	N
1523	chr4	123069650	123069651	rs770379212	34103634	Valette K	2021-06-08	Commun Biol	Prioritization of candidate causal genes for asthma in susceptibility loci derived from UK Biobank.	Asthma	56,167 White-British ancestry cases, 352,255 White-British ancestry controls	NA	4q27	TRPC3, KIAA1109	rs770379212-C	0.380652786943267	3E-14		0.05323962	[0.04-0.067] unit increase	Affymetrix [35186738] (imputed)	N
1523	chr4	123069651	123069652	rs140838728	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pediatric asthma	27,712 European ancestry cases, 411,131 European ancestry controls, 547 East Asian ancestry cases, 161,803 East Asian ancestry controls	NA	4q27		rs140838728-C	NR	3E-11		0.0679	[0.048-0.088] unit increase	Affymetrix, Illumina [25832605] (imputed)	N
1523	chr4	123076006	123076007	rs112481526	34002096	Mullins N	2021-05-17	Nat Genet	Genome-wide association study of more than 40,000 bipolar disorder cases provides new insights into the underlying biology.	Bipolar disorder	41,917 European ancestry cases, 371,549 European ancestry controls	NA	4q27	KIAA1109	rs112481526-A	0.744	2E-9		0.93885	[0.92-0.96]	Affymetrix, Illumina [7549318] (imputed)	N
1523	chr4	123076006	123076007	rs112481526	34002096	Mullins N	2021-05-17	Nat Genet	Genome-wide association study of more than 40,000 bipolar disorder cases provides new insights into the underlying biology.	Bipolar I disorder	25,060 European ancestry cases, 449,978 European ancestry controls	NA	4q27	NR	rs112481526-A	0.741	2E-9		0.92533	[0.9-0.95]	Affymetrix, Illumina [7549318] (imputed)	N
1524	chr4	123096689	123096690	rs78689878	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	4q27	KIAA1109	rs78689878-A	0.0319	5E-9		0.03480868	[0.023-0.046] unit increase	Affymetrix [up to 18485882] (imputed)	N
1524	chr4	123104108	123104108	rs139735807	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	4q27	KIAA1109	rs139735807-?	NR	3E-7		0.031936	[0.02-0.044] unit decrease	Illumina [13520550] (imputed)	N
1524	chr4	123104108	123104108	rs139735807	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	4q27	KIAA1109	rs139735807-?	NR	3E-9		0.0260325	[0.017-0.035] unit increase	Illumina [13520550] (imputed)	N
1524	chr4	123115271	123115272	rs138538714	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	4q27	ADAD1, IL2, IL21, IL21-AS1, KIAA1109	rs138538714-C	0.971902	2E-8		1.1126372	[1.08-1.15]	Affymetrix [8274727] (imputed)	N
1524	chr4	123115501	123115502	rs13151961	24999842	Garner C	2014-07-07	PLoS One	Genome-wide association study of celiac disease in North America confirms FRMD4B as new celiac locus.	Celiac disease	1,550 European ancestry cases, 3,084 European ancestry controls	NA	4q27	IL2, ADAD1, KIAA1109, IL21	rs13151961-?		3E-11		1.54	[1.37-1.75]	Illumina [517345]	N
1524	chr4	123115501	123115502	rs13151961	20190752	Dubois PC	2010-02-28	Nat Genet	Multiple common variants for celiac disease influencing immune gene expression.	Celiac disease	4,533 European ancestry cases, 10,750 European ancestry controls	4,918 European ancestry cases, 5,684 European ancestry controls	4q27	IL2, IL21	rs13151961-?	0.86	2E-27		1.35	[1.28-1.43]	Illumina [292387]	N
1524	chr4	123122855	123122856	rs77087420	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Depression	at least 5,919 European ancestry cases, at least 130,691 European ancestry controls	634,037 European ancestry cases, 1,308,690 European ancestry controls	4q27	KIAA1109	rs77087420-A	0.0507	3E-24		0.05234912	[0.041-0.064] unit increase	NR [9417325] (imputed)	N
1524	chr4	123122855	123122856	rs77087420	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms	688,809 individuals	NA	4q27	NR	rs77087420-?		2E-10				NR [11140414]	N
1524	chr4	123122855	123122856	rs77087420	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depression	688,809 European ancestry individuals	NA	4q27	NR	rs77087420-A	NR	2E-10		6.399	z score increase	Affymetrix [10847151] (imputed)	N
1524	chr4	123122855	123122856	rs77087420	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	4q27	NR	rs77087420-G	NR	1E-10		0.03284	[0.023-0.043] unit decrease	Affymetrix [10847151] (imputed)	N
1524	chr4	123122855	123122856	rs77087420	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling fed-up	374,971 European ancestry individuals	NA	4q27	KIAA1109	rs77087420-A	0.0523652	2E-8		5.58	z score increase	NR [10847151] (imputed)	N
1524	chr4	123122855	123122856	rs77087420	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms (MTAG)	354,862 European ancestry individuals	NA	4q27	NR	rs77087420-G	0.0518	4E-9		0.0284	[0.019-0.038] unit decrease	Illumina [NR] (imputed)	N
1524	chr4	123132491	123132492	rs4505848	19430480	Barrett JC	2009-05-10	Nat Genet	Genome-wide association study and meta-analysis find that over 40 loci affect risk of type 1 diabetes.	Type 1 diabetes	7,514 European ancestry cases, 9,045 European ancestry controls	4,267 European ancestry cases, 4,670 European ancestry controls, 4,342 European ancestry trios from 2,319 families	4q27	IL2	rs4505848-?	NR	5E-13				Affymetrix, Illumina [841622] (imputed)	N
1524	chr4	123136515	123136516	rs12501632	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	4q27	KIAA1109	rs12501632-T	0.028605	6E-11		0.044317007	[0.031-0.058] unit increase	Affymetrix [93095623] (imputed)	N
1524	chr4	123141053	123141054	rs45605540	34116867	Tanaka N	2021-06-02	J Allergy Clin Immunol	Eight novel susceptibility loci and putative causal variants in atopic dermatitis.	Atopic dermatitis	2,597 Japanese ancestry cases, 110,504 Japanese ancestry controls, 25,685 European ancestry cases, 76,768 European ancestry controls	NA	4q27		rs45605540-?	NR	9E-11		1.08	[1.05-1.1]	Illumina [5170515] (imputed)	N
1524	chr4	123141053	123141054	rs45605540	29785011	Zhu Z	2018-05-21	Nat Genet	A genome-wide cross-trait analysis from UK Biobank highlights the shared genetic architecture of asthma and allergic diseases.	Allergic disease (asthma, hay fever or eczema)	25,685 European ancestry allergic diseases cases, 76,768 European ancestry controls	NA	4q27	ADAD1, IL2, KIAA1109	rs45605540-?	NR	4E-10		1.07	[1.05-1.1]	Affymetrix [74888535] (imputed)	N
1524	chr4	123141069	123141070	rs45613035	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (multivariate analysis)	477,968 European ancestry individuals	NA	4q27	KIAA1109	rs45613035-C	0.104	7E-13		0.05	[0.036-0.064] unit decrease	NR [NR] (imputed)	N
1524	chr4	123141069	123141070	rs45613035	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (age of onset)	117,130 European ancestry individuals	NA	4q27	KIAA1109	rs45613035-C	0.104	2E-8		0.038	[0.024-0.052] unit decrease	NR [7647814] (imputed)	N
1524	chr4	123141069	123141070	rs45613035	31959851	Olafsdottir TA	2020-01-20	Nat Commun	Eighty-eight variants highlight the role of T cell regulation and airway remodeling in asthma pathogenesis.	Asthma	16,247 European ancestry cases, 346,486 European ancestry controls, 52,942 cases, 355,713 controls	NA	4q27	KIAA1109, ADAD1, IL2, TRPC3, BBS7, IL21	rs45613035-C	0.09872	5E-14		1.08175	[1.06-1.10]	Affymetrix [32463443] (imputed)	N
1524	chr4	123141069	123141070	rs45613035	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	4q27	NR	rs45613035-?	NR	5E-16				Affymetrix [~ 8270000] (imputed)	N
1524	chr4	123141069	123141070	rs45613035	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	4q27	NR	rs45613035-?	NR	9E-12				Affymetrix [~ 8270000] (imputed)	N
1524	chr4	123141069	123141070	rs45613035	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	4q27	ADAD1, IL2, IL21, IL21-AS1, KIAA1109	rs45613035-C	0.098644	1E-12		1.0773227	[1.06-1.1]	Affymetrix [8274727] (imputed)	N
1524	chr4	123141069	123141070	rs45613035	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	4q27	NR	rs45613035-C	0.09838	6E-20		1.094	[1.074-1.115]	Affymetrix [15688218] (imputed)	N
1524	chr4	123141069	123141070	rs45613035	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	4q27	KIAA1109	rs45613035-C	NR	6E-19		1.107	[1.09-1.13]	Affymetrix [9000000] (imputed)	N
1524	chr4	123141069	123141070	rs45613035	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	4q27		rs45613035-?	NR	2E-26				NR [~ 8900000] (imputed)	N
1524	chr4	123161618	123161619	rs7657746	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	4q27	NR	rs7657746-A	0.76	5E-10	(EA)	1.0973365		Affymetrix, Illumina [~ 9000000] (imputed)	N
1524	chr4	123161618	123161619	rs7657746	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	4q27	NR	rs7657746-A	0.76	2E-13	(EA)	1.0907376		Affymetrix, Illumina [~ 9000000] (imputed)	N
1524	chr4	123161618	123161619	rs7657746	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	4q27	NR	rs7657746-A	0.76	2E-9	(EA)	1.0890222	[1.06-1.12]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1524	chr4	123161618	123161619	rs7657746	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	4q27	IL2, IL21	rs7657746-A	0.753	3E-13		1.116	[1.08-1.154]	Affymetrix, Illumina [1230000] (imputed)	N
1524	chr4	123164799	123164800	rs59294813	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	4q27		rs59294813-G	NR	8E-13		0.0175	[0.013-0.022] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
1524	chr4	123179899	123179900	rs45510500	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	4q27	KIAA1109	rs45510500-T	0.054337	2E-13		0.03661228	[0.027-0.046] unit increase	Affymetrix [93095623] (imputed)	N
1524	chr4	123179899	123179900	rs45510500	31168069	Ward J	2019-06-05	Mol Psychiatry	The genomic basis of mood instability: identification of 46 loci in 363,705 UK Biobank participants, genetic correlation with psychiatric disorders, and association with gene expression and function.	Mood instability	157,039 European ancestry cases, 206,666 European ancestry controls	NA	4q27	intergenic	rs45510500-?	NR	3E-8		0.0137582	[0.0089-0.0186] unit increase	Affymetrix [NR] (imputed)	N
1524	chr4	123184410	123184411	rs6827756	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	4q27	KIAA1109	rs6827756-C	0.637297	3E-41		0.03215487	[0.027-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
1524	chr4	123184410	123184411	rs6827756	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	4q27	NR	rs6827756-C	0.63772	5E-23		0.020387	[0.016-0.024] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
1524	chr4	123184826	123184827	rs45515895	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	4q27	KIAA1109	rs45515895-A	0.2051	8E-10		0.02758785	[0.019-0.036] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1524	chr4	123186392	123186393	rs45510091	30718901	Howard DM	2019-02-04	Nat Neurosci	Genome-wide meta-analysis of depression identifies 102 independent variants and highlights the importance of the prefrontal brain regions.	Depression	118,811 European ancestry cases, 327,427 European ancestry controls, 127,552 cases, 233,763 controls	414,055 European ancestry cases, 892,299 European ancestry controls	4q27	NR	rs45510091-A	0.9472	8E-21		1.047	[1.037-1.057]	NR [8098588] (imputed)	N
1524	chr4	123186392	123186393	rs45510091	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling miserable	376,097 European ancestry individuals	NA	4q27	KIAA1109	rs45510091-A	0.0523298	1E-8		5.71	z score increase	NR [10847151] (imputed)	N
1524	chr4	123186392	123186393	rs45510091	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms	354,862 European ancestry individuals	NA	4q27	NR	rs45510091-A	0.9483	3E-9		0.0318	[0.021-0.042] unit increase	Illumina [NR] (imputed)	N
1524	chr4	123186550	123186551	rs45609335	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	4q27		rs45609335-?	NR	9E-10				NR [~ 8900000] (imputed)	N
1524	chr4	123192239	123192240	rs45608936	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	4q27	KIAA1109	rs45608936-C	0.019943	3E-24		0.08222364	[0.066-0.098] unit decrease	Affymetrix [93095623] (imputed)	N
1524	chr4	123192239	123192240	rs45608936	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q27	NR	rs45608936-A	0.980975	3E-29				Affymetrix, Illumina [17210439] (imputed)	N
1524	chr4	123192239	123192240	rs45608936	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	4q27	NR	rs45608936-A	0.980249	1E-32		0.082101	[0.069-0.096] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1524	chr4	123198434	123198435	rs6534347	17554300	Wellcome Trust Case Control Consortium	2007-06-07	Nature	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Type 1 diabetes	1,963 European ancestry cases, 2,938 European ancestry controls	(see Todd 2007)	4q27	NR	rs6534347-A	0.35	2E-6		1.3	[1.10-1.55]	Affymetrix [469557]	N
1525	chr4	123218312	123218313	rs13119723	20453842	Stahl EA	2010-05-09	Nat Genet	Genome-wide association study meta-analysis identifies seven new rheumatoid arthritis risk loci.	Rheumatoid arthritis	5,539 European ancestry cases, 20,169 European ancestry controls	6,768 European ancestry cases, 8,806 European ancestry controls	4q27	IL2, IL21	rs13119723-A	0.15	7E-7		1.12	[NR]	Affymetrix, Illumina [~ 2716259] (imputed)	N
1525	chr4	123243595	123243596	rs75793288	25751624	Onengut-Gumuscu S	2015-04-01	Nat Genet	Fine mapping of type 1 diabetes susceptibility loci and evidence for colocalization of causal variants with lymphoid gene enhancers.	Type 1 diabetes	6,683 European ancestry cases, 12,173 European ancestry controls, 2,601 European ancestry affected sibling pair families, 69 European ancestry trios	NA	4q27	IL2, IL21	rs75793288-G	0.36	6E-13		1.15		Illumina [135870]	N
1525	chr4	123256164	123256165	rs45616239	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Inflammatory skin disease	2,079 European ancestry atopic dermatitis cases, 4,212 European ancestry psoriasis cases, 11,899 European ancestry controls	NA	4q27	KIAA1109	rs45616239-?	NR	1E-6	(Shared)			Affymetrix, Illumina [~ 5200000]	N
1525	chr4	123261529	123261530	rs62321692	25920553	Coleman C	2015-04-29	Eur J Hum Genet	Common polygenic variation in coeliac disease and confirmation of ZNF335 and NIFA as disease susceptibility loci.	Celiac disease	425 Irish ancestry cases, 453 Irish ancestry controls	11,812 European ancestry cases, 229 Indian ancestry cases, 11,837 European ancestry controls, 391 Indian ancestry controls	4q27	KIAA1109	rs62321692-?	NR	1E-8		0.1924	unit decrease	Illumina [up to 143074]	N
1525	chr4	123266520	123266521	rs74643882	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Celiac disease	11,489 European ancestry cases, 22,308 European ancestry controls	NA	4q27	KIAA1109	rs74643882-T		4E-11		1.6147691		Illumina [252970]	N
1525	chr4	123280859	123280860	rs1127348	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	4q27	KIAA1109	rs1127348-T	NR	4E-9		0.025649	[0.017-0.034] unit decrease	Illumina [13520550] (imputed)	N
1525	chr4	123286226	123286227	rs11727369	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q27	NR	rs11727369-A	0.396099	1E-21				Affymetrix, Illumina [19872809] (imputed)	N
1525	chr4	123308464	123308465	rs151275015	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	4q27	NR	rs151275015-?	NR	5E-8				Affymetrix [~ 8270000] (imputed)	N
1525	chr4	123316075	123316076	rs4145717	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	4q27	ADAD1	rs4145717-T	0.32	1E-28				NR [> 9500000] (imputed)	N
1525	chr4	123316075	123316076	rs4145717	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	4q27	ADAD1	rs4145717-T	0.34	9E-27		1.059	[1.05-1.07]	Affymetrix, Illumina [8307659] (imputed)	N
1525	chr4	123329361	123329362	rs17388568	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	4q27		rs17388568-A	NR	4E-21		0.018	[0.014-0.022] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
1525	chr4	123329361	123329362	rs17388568	23817569	Hinds DA	2013-06-30	Nat Genet	A genome-wide association meta-analysis of self-reported allergy identifies shared and allergy-specific susceptibility loci.	Self-reported allergy	53,862 European ancestry individuals	NA	4q27	ADAD1	rs17388568-A	0.2748	4E-8		0.0727	[0.047-0.099] unit increase	Illumina [2400000] (imputed)	N
1525	chr4	123329361	123329362	rs17388568	21829393	Plagnol V	2011-08-04	PLoS Genet	Genome-wide association analysis of autoantibody positivity in type 1 diabetes cases.	Type 1 diabetes	8,506 European ancestry cases, up to 10,596 European ancestry controls	NA	4q27	ADAD1	rs17388568-A	NR	6E-6		1.1	[NR]	Affymetrix, Illumina [NR]	N
1525	chr4	123329361	123329362	rs17388568	21297633	Anderson CA	2011-02-06	Nat Genet	Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47.	Ulcerative colitis	6,687 European ancestry cases, 19,718 European ancestry controls	9,628 European ancestry cases, 12,917 European ancestry controls	4q27	IL2, ADAD1, IL21	rs17388568-A	0.27	9E-7		1.12	[1.07-1.17]	Affymetrix, Illumina [~ 1100000] (imputed)	N
1525	chr4	123329361	123329362	rs17388568	17554300	Wellcome Trust Case Control Consortium	2007-06-07	Nature	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Type 1 diabetes	1,963 European ancestry cases, 2,938 European ancestry controls	(see Todd 2007)	4q27	NR	rs17388568-A	0.26	3E-6		1.26	[1.11-1.42]	Affymetrix [469557]	N
1525	chr4	123336917	123336918	rs1904522	34785669	Grosche S	2021-11-16	Nat Commun	Rare variant analysis in eczema identifies exonic variants in DUSP1, NOTCH4 and SLC9A4.	Eczema	20,016 European ancestry cases, 380,433 European ancestry controls	NA	4q27		rs1904522-A	0.369	3E-13		1.09		Affymetrix, Illumina [9397031] (imputed)	N
1525	chr4	123336917	123336918	rs1904522	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Asthma	38,369 European ancestry cases, 411,131 European ancestry controls, 13,015 East Asian ancestry cases, 162,933 East Asian ancestry controls	NA	4q27		rs1904522-A	NR	2E-14		0.0546	[0.041-0.069] unit increase	Affymetrix, Illumina [25837673] (imputed)	N
1525	chr4	123336917	123336918	rs1904522	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic rhinitis	18,915 European ancestry cases, 239,773 European ancestry controls	NA	4q27	ADAD1	rs1904522-A	0.3326	5E-15		1.096	[1.072-1.121]	Affymetrix [15688218] (imputed)	N
1525	chr4	123336917	123336918	rs1904522	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	4q27		rs1904522-?	NR	1E-37				NR [~ 8900000] (imputed)	N
1526	chr4	123351430	123351431	rs1479918	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	4q27	IL2, IL21, KIAA1109, ADAD1	rs1479918-?		1E-7				Illumina [9725440] (imputed)	N
1526	chr4	123351430	123351431	rs1479918	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	4q27	IL2, IL21, KIAA1109, ADAD1	rs1479918-?		9E-7				Illumina [9560910] (imputed)	N
1526	chr4	123353431	123353432	rs17454584	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	4q27	ADAD1	rs17454584-G	0.208878	5E-25		1.0791895	[1.06368880699211-1.09491608613037]	NR [9572556] (imputed)	N
1526	chr4	123353431	123353432	rs17454584	31959851	Olafsdottir TA	2020-01-20	Nat Commun	Eighty-eight variants highlight the role of T cell regulation and airway remodeling in asthma pathogenesis.	Asthma	16,247 European ancestry cases, 346,486 European ancestry controls, 52,942 cases, 355,713 controls	NA	4q27	ADAD1, IL2, KIAA1109, IL21, IL21-AS1, BBS12	rs17454584-G	0.21861	8E-12		1.05345	[1.04-1.07]	Affymetrix [32463443] (imputed)	N
1526	chr4	123353431	123353432	rs17454584	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	4q27	NR	rs17454584-G	0.2184	2E-30		1.085	[1.07-1.099]	Affymetrix [15688218] (imputed)	N
1526	chr4	123353431	123353432	rs17454584	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma onset (childhood vs adult)	13,962 European ancestry childhood onset cases, 14,873 European ancestry adult onset cases	31,002 European ancestry childhood onset cases, 16,297 European ancestry adult onset cases	4q27	ADAD1, IL2	rs17454584-G	0.212	5E-8		1.066	[1.04-1.09]	Affymetrix [9000000] (imputed)	N
1526	chr4	123353431	123353432	rs17454584	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	4q27	ADAD1, IL2	rs17454584-?	NR	6E-36		1.114	[1.1-1.13]	Affymetrix [9000000] (imputed)	N
1526	chr4	123353431	123353432	rs17454584	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (adult onset)	26,582 European ancestry cases, 300,671 European ancestry controls	16,297 European ancestry cases, 217,711 European ancestry controls	4q27	ADAD1, IL2	rs17454584-G	0.212	2E-10		1.054	[1.04-1.07]	Affymetrix [9000000] (imputed)	N
1526	chr4	123353431	123353432	rs17454584	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	4q27	ADAD1, IL2	rs17454584-G	NR	2E-21		1.082	[1.07-1.1]	Affymetrix [9000000] (imputed)	N
1526	chr4	123353431	123353432	rs17454584	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Respiratory diseases	approximately 459,000 European ancestry individuals	NA	4q27		rs17454584-?	NR	6E-17				NR [~ 8900000] (imputed)	N
1526	chr4	123353431	123353432	rs17454584	23817571	Bonnelykke K	2013-06-30	Nat Genet	Meta-analysis of genome-wide association studies identifies ten loci influencing allergic sensitization.	Allergic sensitization	5,789 European ancestry cases, 10,056 European ancestry controls	6,114 European ancestry cases, 9,920 European ancestry controls	4q27	IL2, ADAD1, KIAA1109, IL21	rs17454584-G	0.26	6E-10		1.15	[1.1-1.2]	Affymetrix, Illumina [~ 2500000] (imputed)	N
1526	chr4	123359568	123359569	rs62322662	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	4q27		rs62322662-G	0.077647	3E-9		0.024796262	[0.017-0.033] unit increase	Affymetrix [93095623] (imputed)	N
1526	chr4	123359568	123359569	rs62322662	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (adult onset)	26,582 European ancestry cases, 300,671 European ancestry controls	16,297 European ancestry cases, 217,711 European ancestry controls	4q27	ADAD1, IL2	rs62322662-?	NR	8E-10		1.084	[1.06-1.11]	Affymetrix [9000000] (imputed)	N
1526	chr4	123359568	123359569	rs62322662	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	4q27	ADAD1, IL2	rs62322662-G	NR	2E-18		1.119	[1.09-1.14]	Affymetrix [9000000] (imputed)	N
1526	chr4	123359568	123359569	rs62322662	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	4q27		rs62322662-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1526	chr4	123363108	123363109	rs56267605	29785011	Zhu Z	2018-05-21	Nat Genet	A genome-wide cross-trait analysis from UK Biobank highlights the shared genetic architecture of asthma and allergic diseases.	Asthma or allergic disease (pleiotropy)	14,085 European asthma cases, 25,685 European ancestry allergic diseases cases, 76,768 European ancestry controls	NA	4q27	ADAD1, IL2, IL21, IL21-AS1, KIAA1109	rs56267605-?	NR	3E-12		1.05		NR [74888535] (imputed)	N
1526	chr4	123367888	123367889	rs56293330	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (adrenergics, inhalants)	28,880 European ancestry cases, 147,565 European ancestry controls, 5,880 East Asian ancestry cases, 172,846 East Asian ancestry controls	NA	4q27		rs56293330-A	NR	2E-14		0.1318	[0.098-0.166] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1526	chr4	123367888	123367889	rs56293330	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (adrenergics, inhalants)	28,880 European ancestry cases, 147,565 European ancestry controls	NA	4q27	IL2	rs56293330-A	0.0743451	2E-14		0.13154644	[0.098-0.165] unit increase	Affymetrix [7288503] (imputed)	N
1526	chr4	123373132	123373133	rs2069772	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	4q27	IL2	rs2069772-C	0.274341	1E-40		0.03475721	[0.03-0.04] unit increase	Affymetrix [93095623] (imputed)	N
1526	chr4	123373132	123373133	rs2069772	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	4q27	NR	rs2069772-?	NR	8E-11				Affymetrix [~ 8270000] (imputed)	N
1526	chr4	123373132	123373133	rs2069772	30013184	Waage J	2018-07-16	Nat Genet	Genome-wide association and HLA fine-mapping studies identify risk loci and genetic pathways underlying allergic rhinitis.	Allergic sensitization	8,040 European ancestry cases, 16,441 European ancestry controls	NA	4q27	IL2	rs2069772-C	0.31	1E-8		1.14	[1.09-1.19]	Affymetrix, Illumina [16531985] (imputed)	N
1526	chr4	123373132	123373133	rs2069772	25920553	Coleman C	2015-04-29	Eur J Hum Genet	Common polygenic variation in coeliac disease and confirmation of ZNF335 and NIFA as disease susceptibility loci.	Celiac disease	425 Irish ancestry cases, 453 Irish ancestry controls	11,812 European ancestry cases, 229 Indian ancestry cases, 11,837 European ancestry controls, 391 Indian ancestry controls	4q27	ADAD1, IL2, KIAA1109	rs2069772-?	NR	1E-8		0.1158	unit decrease	Illumina [up to 143074]	N
1526	chr4	123373132	123373133	rs2069772	22036096	Ramasamy A	2011-11-01	J Allergy Clin Immunol	A genome-wide meta-analysis of genetic variants associated with allergic rhinitis and grass sensitization and their interaction with birth order.	IgE grass sensitization	2,315 European ancestry cases, 10,032 European ancestry controls	NA	4q27	IL2	rs2069772-C	0.30	1E-6		1.19	[1.11-1.28]	Affymetrix, Illumina [2217510] (imputed)	N
1526	chr4	123377481	123377482	rs2069763	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (childhood onset)	9,433 British ancestry cases, 318,237 British ancestry controls	NA	4q27	IL2, ADAD1, IL21	rs2069763-A	0.334	2E-14		1.126	[1.092-1.160]	Affymetrix [10894596] (imputed)	N
1526	chr4	123377481	123377482	rs2069763	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (age of onset)	37,846 British ancestry individuals	NA	4q27	IL2, ADAD1, IL21	rs2069763-A	0.334	8E-6		0.631	[0.35-0.91] unit decrease	Affymetrix [10894596] (imputed)	N
1526	chr4	123377979	123377980	rs2069762	21829393	Plagnol V	2011-08-04	PLoS Genet	Genome-wide association analysis of autoantibody positivity in type 1 diabetes cases.	Type 1 diabetes	8,506 European ancestry cases, up to 10,596 European ancestry controls	NA	4q27	IL2	rs2069762-A	NR	5E-7		1.12	[NR]	Affymetrix, Illumina [NR]	N
1526	chr4	123386719	123386720	rs45599938	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic disease (asthma, hay fever or eczema)	106,772 European ancestry cases, 239,773 European ancestry controls	83,335 cases, 34,934 controls	4q27	NR	rs45599938-A	0.3341	1E-29		1.067	[1.056-1.079]	Affymetrix [15688218] (imputed)	N
1526	chr4	123387150	123387151	rs55854228	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling miserable	376,097 European ancestry individuals	NA	4q27	NR	rs55854228-A	0.0523221	3E-8		5.56	z score decrease	NR [10847151] (imputed)	N
1526	chr4	123387150	123387151	rs55854228	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling fed-up	374,971 European ancestry individuals	NA	4q27	NR	rs55854228-A	0.0523221	5E-8		5.46	z score decrease	NR [10847151] (imputed)	N
1526	chr4	123387599	123387600	rs1479924	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	4q27		rs1479924-A	NR	4E-9		0.057	[0.038-0.076] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1526	chr4	123387599	123387600	rs1479924	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	4q27	NR	rs1479924-?	NR	9E-13				Affymetrix [~ 8270000] (imputed)	N
1526	chr4	123387599	123387600	rs1479924	23603761	Hinks A	2013-04-21	Nat Genet	Dense genotyping of immune-related disease regions identifies 14 new susceptibility loci for juvenile idiopathic arthritis.	Juvenile idiopathic arthritis (oligoarticular or rheumatoid factor-negative polyarticular)	2,816 European ancestry cases, 13,056 European ancestry controls	NA	4q27	IL2, IL21	rs1479924-?	0.71	6E-11	(additive model)	1.2658228	[1.18-1.35]	Illumina [123003]	N
1526	chr4	123388892	123388893	rs45534736	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	4q27		rs45534736-?	NR	3E-16		0.0503	unit increase	NR [NR]	N
1526	chr4	123388892	123388893	rs45534736	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms (MTAG)	955,012 individuals	NA	4q27	NR	rs45534736-?		2E-9				NR [520857]	N
1526	chr4	123391463	123391464	rs11724582	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	4q27	IL2, IL21	rs11724582-?	NR	2E-8		1.1363636	[1.08-1.19]	Illumina [at least 5000000] (imputed)	N
1526	chr4	123395040	123395041	rs6848139	25608926	Betz RC	2015-01-22	Nat Commun	Genome-wide meta-analysis in alopecia areata resolves HLA associations and reveals two new susceptibility loci.	Alopecia areata	2,332 European ancestry cases and 5,233 European ancestry controls	764 European ancestry cases and 2,256 European ancestry controls	4q27	KIAA1109, ADAD1, IL2, IL21	rs6848139-C	NR	1E-6		1.3306897		Illumina [1233578] (imputed)	N
1526	chr4	123399490	123399491	rs45475795	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	4q27	IL2, IL21	rs45475795-A	0.93	4E-6	(EA)	0.12829	[0.074-0.183] unit decrease	Illumina [8380626] (imputed)	N
1526	chr4	123399490	123399491	rs45475795	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	4q27	IL2, IL21	rs45475795-G	0.07	4E-6	(EA)	1.14	[1.08-1.20]	Affymetrix, Illumina [up to 9739303] (imputed)	N
1526	chr4	123403007	123403008	rs45610037	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (multivariate analysis)	477,968 European ancestry individuals	NA	4q27	IL2, IL21	rs45610037-A	0.227	5E-22		0.049	[0.039-0.059] unit decrease	NR [NR] (imputed)	N
1526	chr4	123403007	123403008	rs45610037	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (age of onset)	117,130 European ancestry individuals	NA	4q27	IL2, IL21	rs45610037-A	0.227	2E-17		0.042	[0.032-0.052] unit decrease	NR [7647814] (imputed)	N
1526	chr4	123417563	123417564	rs148505069	30013184	Waage J	2018-07-16	Nat Genet	Genome-wide association and HLA fine-mapping studies identify risk loci and genetic pathways underlying allergic rhinitis.	Allergic rhinitis	59,762 European and unknown ancestry cases, 152,358 European and unknown ancestry controls	60,720 European ancestry cases, 618,527 European ancestry controls	4q27	IL21, IL2	rs148505069-G	0.333	3E-15		1.07	[1.05-1.08]	Affymetrix, Illumina, Perlegen [16531985] (imputed)	N
1526	chr4	123417563	123417564	rs148505069	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Allergy	66,973 European ancestry cases, 113,768 European ancestry controls	NA	4q27	IL2, IL21	rs148505069-?	NR	4E-11		1.056	[1.039-1.073]	Illumina [12845910] (imputed)	N
1526	chr4	123448561	123448562	rs4380538	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	4q27	IL2, ADAD1	rs4380538-T	0.3334	5E-20				Affymetrix [15688218] (imputed)	N
1526	chr4	123452230	123452231	rs59867199	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	4q27	intergenic	rs59867199-?	NR	7E-20	(subset analysis)			Illumina [130052]	N
1526	chr4	123454110	123454110	rs150254607	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	4q27	IL2, IL21	rs150254607-ATAT	0.07	5E-14		1.078	[1.06-1.1]	Affymetrix, Illumina [8307659] (imputed)	N
1527	chr4	123478715	123478716	rs6852535	21685912	Hoglinger GU	2011-06-19	Nat Genet	Identification of common variants influencing risk of the tauopathy progressive supranuclear palsy.	Progressive supranuclear palsy	1,069 European ancestry cases, 2,958 European ancestry controls, 45 cases, 329 controls	1,051 European ancestry cases, 3,560 European ancestry controls	4q27	IL2, IL21	rs6852535-?	0.34	1E-7		1.23	[1.13-1.32]	Illumina [531451]	N
1527	chr4	123492416	123492417	rs146583707	27723758	Bronson PG	2016-10-10	Nat Genet	Common variants at PVT1, ATG13-AMBRA1, AHI1 and CLEC16A are associated with selective IgA deficiency.	Selective IgA deficiency	1,635 European ancestry cases, 4,852 European ancestry controls	NA	4q27	IL2, IL21	rs146583707-A		1E-6		1.25	[NR]	Illumina [up to 9464381] (imputed)	N
1527	chr4	123497696	123497697	rs17389644	26482879	Paternoster L	2015-10-19	Nat Genet	Multi-ancestry genome-wide association study of 21,000 cases and 95,000 controls identifies new risk loci for atopic dermatitis.	Atopic dermatitis	18,900 European ancestry cases, 1,472 Japanese ancestry cases, 422 African American cases, 300 Latino cases, 305 cases, 84,166 European ancestry controls, 7,966 Japanese ancestry controls, 844 African American controls, 1,592 Latino controls, 896 controls	30,588 European ancestry cases, 459 African American cases, 1,012 Chinese ancestry cases, 226,537 European ancestry controls, 729 African American controls, 1,362 Chinese ancestry controls	4q27	IL2, IL21	rs17389644-A	NR	4E-6	(EA, fixed effects)	1.07	[1.04-1.10]	Illumina [15539996] (imputed)	N
1527	chr4	123497696	123497697	rs17389644	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Atopic dermatitis	2,079 European ancestry cases, 3,867 European ancestry controls	NA	4q27	IL2, IL21	rs17389644-A	NR	1E-6		1.208	[1.119-1.304]	Affymetrix, Illumina, Perlegen [up to 5493100] (imputed)	N
1527	chr4	123497696	123497697	rs17389644	23727859	Ellinghaus D	2013-06-02	Nat Genet	High-density genotyping study identifies four new susceptibility loci for atopic dermatitis.	Atopic dermatitis	2,425 European ancestry cases, 5,449 European ancestry controls	1,951 European ancestry cases, 4,599 European ancestry controls	4q27	IL2, IL21	rs17389644-A	0.2396	1E-8		1.19	[1.12-1.26]	Illumina [128830]	N
1527	chr4	123499744	123499745	rs13140464	27992413	Ji SG	2016-12-19	Nat Genet	Genome-wide association study of primary sclerosing cholangitis identifies new risk loci and quantifies the genetic relationship with inflammatory bowel disease.	Primary sclerosing cholangitis	2,871 European ancestry cases, 12,019 European ancestry controls	1,925 European ancestry cases, 7,936 European ancestry controls	4q27	IL2, IL21	rs13140464-G	0.84	1E-13		1.28	[1.20-1.36]	Affymetrix, Illumina [7891602] (imputed)	N
1527	chr4	123499744	123499745	rs13140464	23603763	Liu JZ	2013-06-01	Nat Genet	Dense genotyping of immune-related disease regions identifies nine new risk loci for primary sclerosing cholangitis.	Primary sclerosing cholangitis	3,789 European ancestry cases, 25,079 European ancestry controls	NA	4q27	IL2, IL21	rs13140464-C	0.836	9E-13		1.3	[1.21-1.40]	Illumina [140322] (imputed)	N
1527	chr4	123501085	123501086	rs7681161	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	4q27		rs7681161-G	0.295041	6E-10		0.015008013	[0.01-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1527	chr4	123506055	123506056	rs1512973	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q27	Intergenic	rs1512973-G	0.4	5E-6	(AA)	0.073	NR unit decrease	Illumina [NR] (imputed)	N
1527	chr4	123509420	123509421	rs6822844	18311140	Hunt KA	2008-03-02	Nat Genet	Newly identified genetic risk variants for celiac disease related to the immune response.	Celiac disease	767 European ancestry cases, 1,422 European ancestry controls	1,643 European ancestry cases, 3,406 European ancestry controls	4q27	IL2, ADAD1, KIAA1109, IL21	rs6822844-C	0.81	3E-13		1.44	[1.30-1.58]	Illumina [310605]	N
1527	chr4	123509420	123509421	rs6822844	17558408	van Heel DA	2007-06-10	Nat Genet	A genome-wide association study for celiac disease identifies risk variants in the region harboring IL2 and IL21.	Celiac disease	778 European ancestry cases, 1,422 European ancestry controls	991 European ancestry cases, 1,489 European ancestry controls	4q27	IL2, TENR, KIAA1109, IL21	rs6822844-G	0.82	1E-14		1.59	[1.41-1.75]	Illumina [310605]	N
1527	chr4	123509712	123509713	rs6848834	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar I disorder	14,879 European ancestry cases, 31,358 European ancestry controls	NA	4q27	NR	rs6848834-T	0.328	1E-7		1.08839		NR [9372253] (imputed)	N
1527	chr4	123510765	123510766	rs6829845	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Bipolar disorder vs ADHD (ordinary least squares (OLS))	20,352 bipolar disorder cases, 19,099 ADHD cases	NA	4q27		rs6829845-?	NR	1E-8		0.0199	NR unit decrease	NR [5637374] (imputed)	N
1527	chr4	123510765	123510766	rs6829845	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	4q27	KIAA1109, ADAD1, IL2, IL21	rs6829845-A	0.328	5E-6		1.05538	[1.03-1.08]	NR [9372253] (imputed)	N
1527	chr4	123516550	123516551	rs72669198	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	4q27		rs72669198-C	NR	6E-10		0.0542	[0.037-0.071] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1527	chr4	123516550	123516551	rs72669198	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	4q27		rs72669198-C	0.018466	7E-11		0.055813715	[0.039-0.073] unit increase	Affymetrix [93095623] (imputed)	N
1527	chr4	123516550	123516551	rs72669198	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q27	NR	rs72669198-C	0.0172026	1E-11				Affymetrix, Illumina [24588908] (imputed)	N
1527	chr4	123516550	123516551	rs72669198	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	4q27	NR	rs72669198-C	0.017903	7E-14		0.050351	[0.037-0.064] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1527	chr4	123516550	123516551	rs72669198	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	4q27	intergenic	rs72669198-C	0.0182	2E-10		0.09016081	[0.062-0.118] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1527	chr4	123517232	123517233	rs13103766	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q27	Intergenic	rs13103766-A	0.596	3E-6	(AA)	0.076	NR unit increase	Illumina [NR] (imputed)	N
1527	chr4	123523874	123523875	rs7682241	20596022	Petukhova L	2010-07-01	Nature	Genome-wide association study in alopecia areata implicates both innate and adaptive immunity.	Alopecia areata	Up to 1,054 European ancestry cases, 3,278 European ancestry controls	NA	4q27	IL2, IL21	rs7682241-A	0.33	4E-8		1.34	[1.21-1.48]	Illumina [463301]	N
1527	chr4	123524025	123524026	rs7682481	25608926	Betz RC	2015-01-22	Nat Commun	Genome-wide meta-analysis in alopecia areata resolves HLA associations and reveals two new susceptibility loci.	Alopecia areata	2,332 European ancestry cases and 5,233 European ancestry controls	764 European ancestry cases and 2,256 European ancestry controls	4q27	IL21, IL2	rs7682481-C	NR	5E-9		1.23		Illumina [1233578] (imputed)	N
1527	chr4	123546281	123546282	rs6833591	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	4q27	NR	rs6833591-G	NR	8E-13		0.0187	[0.014-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
1527	chr4	123546281	123546282	rs6833591	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	4q27	AC053545.3	rs6833591-G	0.346625	8E-10		0.05895471	[0.04-0.078] unit decrease	Affymetrix [7288503] (imputed)	N
1527	chr4	123546281	123546282	rs6833591	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	4q27		rs6833591-?	NR	8E-10				NR [~ 8900000] (imputed)	N
1527	chr4	123547595	123547596	rs62324204	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	4q27	IL21-AS1, IL21, CETN4P, BBS12	rs62324204-C	NR	1E-6	(sleep latency)	0.4116	[0.25-0.58] unit increase	Affymetrix [7141204] (imputed)	N
1527	chr4	123549698	123549699	rs17005934	28425483	Qiu F	2017-04-20	Nat Commun	A genome-wide association study identifies six novel risk loci for primary biliary cholangitis.	Primary biliary cholangitis	1,122 Han Chinese ancestry cases, 4,036 Han Chinese ancestry controls	907 Han Chinese ancestry cases, 2,127 Han Chinese ancestry controls	4q27	IL21	rs17005934-G	0.352	1E-11		1.29	[1.21-1.39]	Illumina [776516]	N
1527	chr4	123551113	123551114	rs13132308	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Celiac disease	11,489 European ancestry cases, 22,308 European ancestry controls	NA	4q27	IL21-AS1	rs13132308-?		3E-36		1.4120632		Illumina [252970]	N
1527	chr4	123551113	123551114	rs13132308	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	4q27	IL21	rs13132308-?	NR	5E-8	(subset analysis)			Illumina [130052]	N
1527	chr4	123551113	123551114	rs13132308	22057235	Trynka G	2011-11-06	Nat Genet	Dense genotyping identifies and localizes multiple common and rare variant association signals in celiac disease.	Celiac disease	11,812 European ancestry cases, 229 Indian ancestry cases, 11,837 European ancestry controls, 391 Indian ancestry controls	NA	4q27	KIAA1109, ADAD1, IL2, IL21	rs13132308-A	0.834	2E-38		1.4084507		Illumina [139553]	N
1527	chr4	123554706	123554707	rs6840978	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Autoimmune traits	approximately 459,000 European ancestry individuals	NA	4q27		rs6840978-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1527	chr4	123560938	123560939	rs62324212	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	4q27	NR	rs62324212-?	NR	1E-14				Affymetrix [~ 8270000] (imputed)	N
1527	chr4	123560938	123560939	rs62324212	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	4q27	NR	rs62324212-?	NR	3E-13				Affymetrix [~ 8270000] (imputed)	N
1527	chr4	123560938	123560939	rs62324212	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	4q27		rs62324212-?	NR	1E-23				NR [~ 8900000] (imputed)	N
1527	chr4	123560938	123560939	rs62324212	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	4q27	IL21-AS1	rs62324212-A	0.4408	5E-9		0.02108594	[0.014-0.028] unit increase	Affymetrix [~ 2500000] (imputed)	N
1527	chr4	123560938	123560939	rs62324212	26301688	Li YR	2015-08-24	Nat Med	Meta-analysis of shared genetic architecture across ten pediatric autoimmune diseases.	Pediatric autoimmune diseases	97 European ancestry thyroiditis cases, 107 European ancestry ankylosing spondylitis cases, 100 European ancestry psoriasis cases, 173 European ancestry celiac disease cases, 254 European ancestry systemic lupus erythematosus cases, 308 European ancestry common variable inmunodeficiency cases, 865 European ancestry ulcerative colitis cases, 1,086 European ancestry Type 1 diabetes cases, 1,123  European ancestry juvenile idiopathic arthritis cases, 1,922  European ancestry Crohn's disease cases, 10,718 European ancestry controls	NA	4q27	IL21	rs62324212-A	0.42	3E-8				Illumina [7347414] (imputed)	N
1527	chr4	123568408	123568409	rs78538083	25778476	Jun G	2015-03-17	Mol Psychiatry	A novel Alzheimer disease locus located near the gene encoding tau protein.	Alzheimer's disease in APOE e4- carriers	7,184 cases, 26,968 controls	718 European ancestry cases, 1,699 European ancestry controls	4q27	IL21, CETN4P	rs78538083-C	0.06	8E-6		1.32	[1.17-1.48]	NR [NR]	N
1527	chr4	123588525	123588526	rs925550	28425483	Qiu F	2017-04-20	Nat Commun	A genome-wide association study identifies six novel risk loci for primary biliary cholangitis.	Primary biliary cholangitis	1,122 Han Chinese ancestry cases, 4,036 Han Chinese ancestry controls	907 Han Chinese ancestry cases, 2,127 Han Chinese ancestry controls	4q27	IL21	rs925550-A	0.370	4E-13		1.31	[1.21-1.40]	Illumina [776516]	N
1527	chr4	123592733	123592734	rs182783477	28498854	Liang J	2017-05-12	PLoS Genet	Single-trait and multi-trait genome-wide association analyses identify novel loci for blood pressure in African-ancestry populations.	Pulse pressure	Up to 31,155 African individuals	Up to 4,187 African individuals, up to 14,016 Korean ancestry individuals, up to 23,914 European ancestry individuals, up to 12,278 Hispanic individuals	4q27	NR	rs182783477-?	NR	7E-7		2.5105	[1.52-3.50] unit decrease	Affymetrix, Illumina [at least 30072738] (imputed)	N
1527	chr4	123592855	123592856	rs991290	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	4q27	BBS12	rs991290-?	NR	1E-6	(TAG 54:1)	0.2414555	[0.14-0.34] unit increase	Affymetrix [at least 2500000] (imputed)	N
1527	chr4	123599321	123599322	rs75802552	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	4q27	IL21-AS1	rs75802552-C	0.2326	4E-9		0.02507786	[0.017-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
1528	chr4	123601411	123601412	rs6835638	32589924	Bi W	2020-06-23	Am J Hum Genet	A Fast and Accurate Method for Genome-Wide Time-to-Event Data Analysis and Its Application to UK Biobank.	Asthma (time to event)	25,240 British ancestry cases, 257,631 British ancestry controls	NA	4q27	IL21-AS1	rs6835638-?	NR	2E-7				NR [~ 24000000] (imputed)	N
1528	chr4	123601513	123601514	rs1913191	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	4q27	IL21-AS1	rs1913191-T	0.303159	5E-27		0.026793795	[0.022-0.032] unit increase	Affymetrix [93095623] (imputed)	N
1528	chr4	123601696	123601697	rs6836610	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	4q27	IL21-AS1	rs6836610-A	0.303187	2E-22		0.023837578	[0.019-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1528	chr4	123611541	123611542	rs309392	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	4q27	IL21, BBS12	rs309392-T	0.609	1E-8	(men)	0.0258324	[0.017-0.035] unit decrease	Illumina [13520550] (imputed)	N
1528	chr4	123611541	123611542	rs309392	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	4q27	IL21, BBS12	rs309392-T	0.609	2E-37		0.0484442	[0.041-0.056] unit decrease	Illumina [13520550] (imputed)	N
1528	chr4	123613315	123613316	rs309393	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	4q27	IL21, BBS12	rs309393-G	0.433	6E-7	(women)	0.0228703	[0.014-0.032] unit increase	Illumina [13520550] (imputed)	N
1528	chr4	123613669	123613670	rs309394	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	4q27	IL21, BBS12	rs309394-T	0.433	2E-11		0.0235709	[0.017-0.03] unit increase	Illumina [13519193] (imputed)	N
1528	chr4	123613669	123613670	rs309394	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	4q27	IL21, BBS12	rs309394-T	NR	5E-13		0.0230909	[0.017-0.029] unit increase	Illumina [13520550] (imputed)	N
1528	chr4	123616821	123616822	rs309403	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Perceived unattractiveness to mosquitoes	16,576 European ancestry individuals	NA	4q27	BC045668, CETN4P	rs309403-T	0.393	2E-23		0.238035	[0.19-0.28] unit increase	Illumina [7433384] (imputed)	N
1528	chr4	123628237	123628238	rs13143163	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Monokine induced by gamma interferon levels	3,685 Finnish ancestry individuals	NA	4q27	NR	rs13143163-G	NR	4E-6		0.2706	[0.16-0.39] SD units decrease	NR [10700000] (imputed)	N
1528	chr4	123629001	123629002	rs377070	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	4q27	IL21, BBS12	rs377070-G	0.388	3E-39		0.0704348	[0.06-0.081] unit decrease	Illumina [13520550] (imputed)	N
1528	chr4	123656407	123656408	rs7658801	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Caudate nucleus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	4q27	BBS12	rs7658801-?		4E-6				Illumina [4322238] (imputed)	N
1528	chr4	123681155	123681156	rs309375	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	4q27		rs309375-A	NR	5E-15		0.0189	[0.014-0.024] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
1528	chr4	123681155	123681156	rs309375	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	4q27		rs309375-A	0.572102	3E-17		0.019205233	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1528	chr4	123681155	123681156	rs309375	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	4q27		rs309375-A	0.572125	6E-19		0.020206438	[0.016-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1528	chr4	123681155	123681156	rs309375	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	4q27		rs309375-A	0.572148	2E-14		0.01748598	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1528	chr4	123681155	123681156	rs309375	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q27	NR	rs309375-A	0.640946	2E-19				Affymetrix, Illumina [23472807] (imputed)	N
1528	chr4	123681155	123681156	rs309375	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	4q27	NR	rs309375-A	0.574699	8E-23		0.019206	[0.015-0.023] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1528	chr4	123727294	123727295	rs79712192	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	4q28.1	Intergenic	rs79712192-T	NR	7E-7		0.0331185	[0.02-0.046] unit increase	Illumina [13520550] (imputed)	N
1528	chr4	123727294	123727295	rs79712192	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	4q28.1	Intergenic	rs79712192-T	NR	3E-13		0.0564257	[0.041-0.072] unit increase	Illumina [13520550] (imputed)	N
1529	chr4	123738545	123738546	rs308447	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Perceived unattractiveness to mosquitoes	16,576 European ancestry individuals	NA	4q28.1	intergenic	rs308447-T	NR	7E-6		0.106584	[0.06-0.153] unit decrease	Illumina [7433384] (imputed)	N
1529	chr4	123757747	123757748	rs308403	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	4q28.1		rs308403-?	NR	4E-17				NR [~ 8900000] (imputed)	N
1529	chr4	123757747	123757748	rs308403	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	4q28.1	FGF2, AC021205.1, RP11-170N16.2	rs308403-T	0.3192771	6E-39	(Fibroblast growth factor 2)	0.5896	[0.5-0.67] unit decrease	Affymetrix [509946]	N
1529	chr4	123762896	123762897	rs10518406	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	4q28.1	FGF2	rs10518406-G	0.038	7E-7	(EA, men)	0.061	[0.037-0.085] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1529	chr4	123773578	123773579	rs308439	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	4q28.1	FGF2	rs308439-T	NR	4E-8		0.0701268	[0.045-0.095] unit decrease	Illumina [13520550] (imputed)	N
1529	chr4	123775376	123775377	rs28544074	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	4q28.1	NR	rs28544074-?	NR	6E-9				Affymetrix [~ 8270000] (imputed)	N
1529	chr4	123779340	123779341	rs17407577	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	4q28.1	FGF2	rs17407577-C	NR	5E-9		0.0345894	[0.023-0.046] unit decrease	Affymetrix [321169] (imputed)	N
1529	chr4	123781871	123781872	rs9307513	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	4q28.1	FGF2	rs9307513-A	NR	5E-8		0.0275041	[0.018-0.037] unit decrease	Affymetrix [319769] (imputed)	N
1529	chr4	123825918	123825919	rs12509014	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	4q28.1		rs12509014-?	NR	2E-24				NR [~ 8900000] (imputed)	N
1529	chr4	123825918	123825919	rs12509014	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	4q28.1	NR	rs12509014-?	NR	2E-7		0.14093	[0.088-0.194] unit decrease	Affymetrix [7794483] (imputed)	N
1529	chr4	123828041	123828042	rs34848742	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	4q28.1		rs34848742-G	NR	9E-10		0.0143	[0.0098-0.0188] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1529	chr4	123828041	123828042	rs34848742	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	4q28.1		rs34848742-G	NR	1E-17		0.0158	[0.012-0.019] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1529	chr4	123828041	123828042	rs34848742	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	4q28.1		rs34848742-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1529	chr4	123833153	123833154	rs11098676	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	4q28.1	NUDT6	rs11098676-T	0.212360864516997	2E-8		0.054	[0.035-0.073] unit decrease	NR [5035015] (imputed)	N
1530	chr4	123920496	123920497	rs186353960	31095341	Kerns SL	2019-05-16	J Natl Cancer Inst	Radiogenomics Consortium Genome-Wide Association Study Meta-analysis of Late Toxicity after Prostate Cancer Radiotherapy.	Toxicity response to radiotherapy in prostate cancer (increased urinary frequency) (time to event)	3,782 European ancestry individuals	NA	4q28.1	NR	rs186353960-?	0.04	3E-7		2.44	[1.73-3.44]	Affymetrix, Illumina [~ 6000000] (imputed)	N
1530	chr4	123923954	123923955	rs149921263	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	4q28.1	SPATA5	rs149921263-A	NR	4E-8		0.0406633	[0.026-0.055] unit increase	Affymetrix [319769] (imputed)	N
1530	chr4	123923954	123923955	rs149921263	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	4q28.1	NR	rs149921263-?	NR	1E-13				Affymetrix [~ 8270000] (imputed)	N
1530	chr4	123962965	123962966	rs13119779	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	4q28.1	SPATA5	rs13119779-T	NR	2E-7		0.0272519	[0.017-0.038] unit decrease	Illumina [13520550] (imputed)	N
1530	chr4	123968512	123968513	rs34180132	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	4q28.1	SPATA5	rs34180132-?	NR	2E-6		0.0150353	[0.0088-0.0213] unit decrease	Illumina [13520550] (imputed)	N
1530	chr4	123968512	123968513	rs34180132	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	4q28.1	SPATA5	rs34180132-?	NR	2E-11		0.0247749	[0.018-0.032] unit decrease	Illumina [13520550] (imputed)	N
1531	chr4	124039322	124039323	rs306005	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	4q28.1	NR	rs306005-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1531	chr4	124042418	124042419	rs4000991	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	4q28.1	SPATA5	rs4000991-A	NR	3E-8		0.0174628	[0.011-0.024] unit decrease	Affymetrix [321114] (imputed)	N
1531	chr4	124045440	124045441	rs13129339	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	4q28.1	SPATA5	rs13129339-C	NR	2E-11		0.0236329	[0.017-0.031] unit decrease	Affymetrix [319769] (imputed)	N
1531	chr4	124045440	124045441	rs13129339	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	4q28.1	SPATA5	rs13129339-C	NR	9E-11		0.0228695	[0.016-0.03] unit decrease	Affymetrix [319769] (imputed)	N
1531	chr4	124045440	124045441	rs13129339	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	4q28.1	SPATA5	rs13129339-C	NR	3E-11		0.0236492	[0.017-0.031] unit decrease	Affymetrix [321169] (imputed)	N
1531	chr4	124051466	124051467	rs9999118	24797007	Holliday EG	2014-05-01	Am J Gastroenterol	Genome-wide association study identifies two novel genomic regions in irritable bowel syndrome.	Irritable bowel syndrome	Up to 172 European ancestry cases, 1,398 European ancestry controls	Up to 485 European ancestry cases, up to 716 European ancestry controls	4q28.1	FGF2, NUDT6, SPRY1	rs9999118-G	0.025	8E-8	(IBS-D )	7.3	[3.53-15.03]	Affymetrix [~ 2500000] (imputed)	N
1531	chr4	124066947	124066948	rs303084	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	4q28.1	SPATA5	rs303084-G	NR	2E-9		0.0228711	[0.015-0.03] unit increase	Affymetrix [323123] (imputed)	N
1531	chr4	124066947	124066948	rs303084	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	4q28.1	NR	rs303084-A	0.79	5E-19		0.019	[0.015-0.023] unit increase	Affymetrix [2446094] (imputed)	N
1531	chr4	124066947	124066948	rs303084	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	4q28.1	NR	rs303084-A	0.79	5E-8				Affymetrix [2446094] (imputed)	N
1531	chr4	124066947	124066948	rs303084	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	4q28.1	SPATA5, FGF2	rs303084-A	0.748	8E-6		0.02	[0.011-0.029] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1531	chr4	124066947	124066948	rs303084	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex x age interaction (4df test)	up to 43,776 European ancestry men aged <50, up to 50,526 European ancestry women aged <50, up to 69,944 European ancestry men aged >50, up to 88,129 European ancestry women aged >50	NA	4q28.1	NR	rs303084-A	0.79545236333131	7E-8				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1531	chr4	124066947	124066948	rs303084	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	4q28.1	NR	rs303084-A	0.79545236333131	5E-9		0.023823267	units increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1531	chr4	124066947	124066948	rs303084	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	4q28.1	SPATA5, FGF2	rs303084-A	0.7961	4E-8	(EA)	0.0232	[0.015-0.031] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1531	chr4	124066947	124066948	rs303084	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	4q28.1	SPATA5, FGF2	rs303084-A	0.7946	3E-7	(EA, women)	0.0288	[0.018-0.04] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1531	chr4	124066947	124066948	rs303084	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	4q28.1	SPATA5, FGF2	rs303084-A	0.7701	3E-7		0.0209	[0.013-0.029] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1531	chr4	124066947	124066948	rs303084	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	4q28.1	SPATA5, FGF2	rs303084-A	0.7682	5E-6	(women)	0.0249	[0.014-0.036] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1531	chr4	124072483	124072484	rs144663795	33017352	Kim SK	2020-10-01	Med Sci Sports Exerc	A Genome-wide Association Study for Concussion Risk.	Concussion	4,064 European ancestry cases, 291,472 European ancestry controls	NA	4q28.1	SPATA5	rs144663795-C	0.014	1E-10		2.91	NR	Affymetrix [7743986] (imputed)	N
1531	chr4	124087772	124087773	rs216101	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	4q28.1	SPATA5	rs216101-A	NR	1E-11		0.0210998	[0.015-0.027] unit decrease	Affymetrix [319769] (imputed)	N
1531	chr4	124087772	124087773	rs216101	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	4q28.1	SPATA5	rs216101-A	NR	2E-11		0.0209758	[0.015-0.027] unit decrease	Affymetrix [319769] (imputed)	N
1531	chr4	124087772	124087773	rs216101	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	4q28.1	SPATA5	rs216101-A	NR	9E-11		0.0203311	[0.014-0.026] unit decrease	Affymetrix [321114] (imputed)	N
1531	chr4	124087772	124087773	rs216101	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	4q28.1	SPATA5	rs216101-A	NR	5E-12		0.0216759	[0.016-0.028] unit decrease	Affymetrix [321169] (imputed)	N
1531	chr4	124087772	124087773	rs216101	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	4q28.1		rs216101-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1531	chr4	124090262	124090263	rs7676303	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	4q28.1	SPATA5	rs7676303-G	NR	4E-8		0.0358756	[0.023-0.049] unit decrease	Affymetrix [321169] (imputed)	N
1531	chr4	124102490	124102491	rs303127	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	4q28.1	NR	rs303127-C	0.2739	9E-10				NR [9056863] (imputed)	N
1532	chr4	124149235	124149236	rs13103663	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	4q28.1		rs13103663-?	NR	5E-13				NR [~ 8900000] (imputed)	N
1532	chr4	124155196	124155197	rs303143	30706531	Tao F	2019-01-31	Ann Neurol	Variation in SIPA1L2 is Correlated with Phenotype Modification in CMT Type 1A.	Reduced foot dorsiflexion strength in Charcot-Marie-Tooth disease type 1A	183 European ancestry cases severe cases, 147 European ancestry mild cases	55 Asian ancestry severe cases, 25 Asian ancestry mild cases	4q28.1	SPATA5	rs303143-A	NR	8E-7	(EA)	30.30303	[7.81-111.11]	Illumina [633827]	N
1532	chr4	124170406	124170407	rs13129280	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	4q28.1	SPATA5	rs13129280-T	NR	1E-10		0.0253984	[0.018-0.033] unit increase	Illumina [13520550] (imputed)	N
1532	chr4	124171833	124171834	rs11098699	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	4q28.1	SPATA5	rs11098699-G	NR	4E-11		0.0463575	[0.033-0.06] unit decrease	Illumina [13520550] (imputed)	N
1532	chr4	124179513	124179514	rs13104678	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	4q28.1		rs13104678-G	0.31	1E-11		6.8	z score increase	Affymetrix [9061022] (imputed)	N
1532	chr4	124179518	124179519	rs13104688	35132056	Mitchell BL	2022-02-07	Nat Commun	Genome-wide association meta-analysis identifies 29 new acne susceptibility loci.	acne vulgaris	20,165 European ancestry cases, 595,231 European ancestry controls	NA	4q28.1	NR	rs13104688-G	0.3426	6E-16		1.11	[1.08-1.13]	Affymetrix, Illumina [7072771] (imputed)	N
1532	chr4	124233099	124233100	rs2047202	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	4q28.1	NR	rs2047202-G	0.845282	3E-10		0.017391	[0.012-0.023] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
1532	chr4	124247405	124247406	rs13114897	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	4q28.1		rs13114897-T	0.18	3E-15		7.88	z score increase	Affymetrix [9061022] (imputed)	N
1532	chr4	124247405	124247406	rs13114897	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	4q28.1	NR	rs13114897-T	0.1951	2E-17				NR [9056863] (imputed)	N
1532	chr4	124253788	124253789	rs4487353	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	4q28.1		rs4487353-G	0.31	9E-44		13.88	z score increase	Affymetrix [9061022] (imputed)	N
1532	chr4	124253788	124253789	rs4487353	30542056	Petridis C	2018-12-12	Nat Commun	Genome-wide meta-analysis implicates mediators of hair follicle development and morphogenesis in risk for severe acne.	Acne (severe)	5,602 European ancestry cases, 21,120 European ancestry controls	NA	4q28.1	FGF2	rs4487353-G	0.33	2E-9		1.14	[1.09-1.20]	Illumina [up to 7441713] (imputed)	N
1533	chr4	124257090	124257091	rs7677059	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 6)	19,670 European ancestry individuals	NA	4q28.1		rs7677059-?	NR	2E-8				NR [9705931] (imputed)	N
1533	chr4	124272134	124272135	rs75583553	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	4q28.1	Intergenic	rs75583553-?	NR	4E-6		0.0256056	[0.015-0.037] unit increase	Illumina [13520550] (imputed)	N
1533	chr4	124272134	124272135	rs75583553	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	4q28.1	Intergenic	rs75583553-?	NR	8E-8		0.0210598	[0.013-0.029] unit decrease	Illumina [13520550] (imputed)	N
1533	chr4	124280849	124280850	rs931561	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	4q28.1	SPRY1	rs931561-G	NR	8E-9		0.0267553	[0.018-0.036] unit decrease	Affymetrix [321169] (imputed)	N
1533	chr4	124361447	124361448	rs115669577	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Tumor necrosis factor alpha levels	3,454 Finnish ancestry individuals	NA	4q28.1	NR	rs115669577-G		8E-7		0.9889	[0.6-1.38] SD units decrease	NR [10700000] (imputed)	N
1534	chr4	124387478	124387479	rs10776501	26545240	Giri A	2015-11-06	PLoS One	Genetic Determinants of Pelvic Organ Prolapse among African American and Hispanic Women in the Women's Health Initiative.	Pelvic organ prolapse	793 African American cases, 948 African American controls, 606 Hispanic cases, 305 Hispanic controls	NA	4q28.1	SPRY1, SPATA5	rs10776501-A	0.69	2E-6		1.38		Affymetrix [at least 730985] (imputed)	N
1534	chr4	124437475	124437476	rs183262347	33602968	Skuladottir AT	2021-02-18	Sci Rep	A meta-analysis uncovers the first sequence variant conferring risk of Bell's palsy.	Bell's palsy	4,714 European ancestry cases, 1,011,520 European ancestry controls	NA	4q28.1	intergenic	rs183262347-G	0.0021	6E-6		0.13932	NR	Affymetrix, Illumina [30341632] (imputed)	N
1534	chr4	124437567	124437568	rs17808302	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	L1-L4 bone mineral density x serum urate levels interaction	2,207 men, 2,354 women	NA		AC093821.1	rs17808302-?	NR	1E-6	(female)	0.46355	[NR] unit increase	Affymetrix [NR] (imputed)	N
1535	chr4	124531421	124531422	rs2589850	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	4q28.1	NR	rs2589850-C	0.239644	2E-10		0.0232922	[0.016-0.03] unit decrease	NR [19129689] (imputed)	N
1535	chr4	124534991	124534992	rs77431781	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	4q28.1	LINC01091	rs77431781-A	0.931545	4E-11		0.0236852	[0.017-0.031] unit increase	NR [13737936] (imputed)	N
1535	chr4	124534991	124534992	rs77431781	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	4q28.1		rs77431781-?	NR	8E-11		0.0244211	[0.017-0.032] unit increase	Affymetrix [20259828] (imputed)	N
1535	chr4	124580864	124580877	rs143120951	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	4q28.1		rs143120951-T	NR	8E-9		0.0105	[0.007-0.014] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
1535	chr4	124581261	124581262	rs62319742	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (current vs non-current) interaction (1df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	4q28.1	SPRY1, LINC01091	rs62319742-A	0.0139	6E-6	(African)	16.5	unit decrease	Affymetrix, Illumina [18800000] (imputed)	N
1535	chr4	124581261	124581262	rs62319742	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	4q28.1	SPRY1, LINC01091	rs62319742-?	NR	4E-8	(African)			Affymetrix, Illumina [18800000] (imputed)	N
1535	chr4	124581261	124581262	rs62319742	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (1df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	4q28.1	SPRY1, LINC01091	rs62319742-A	0.0139	3E-8	(African)	10.98	unit decrease	Affymetrix, Illumina [18800000] (imputed)	N
1535	chr4	124627379	124627380	rs12503601	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	4q28.1		rs12503601-?	NR	4E-14				NR [~ 8900000] (imputed)	N
1536	chr4	124654570	124654571	rs4833941	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	4q28.1	NR	rs4833941-?	NR	1E-7				Affymetrix [NR]	N
1536	chr4	124663355	124663356	rs111361850	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	4q28.1	intergenic	rs111361850-A	0.001	1E-6		34.08	[3.52 - 329.69]	Illumina [1556551]	N
1536	chr4	124670680	124670681	rs17755079	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	4q28.1	LINC01091	rs17755079-T	0.092508	1E-13		0.029082526	[0.021-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
1536	chr4	124670680	124670681	rs17755079	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	4q28.1	LINC01091	rs17755079-T	0.092531	2E-11		0.026318794	[0.019-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
1536	chr4	124670680	124670681	rs17755079	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q28.1	NR	rs17755079-T	0.0730706	8E-16				Affymetrix, Illumina [24588908] (imputed)	N
1536	chr4	124678191	124678191	rs766331935	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA		NR	rs766331935-D	0.108744	3E-18		0.028576	[0.022-0.035] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1536	chr4	124700388	124700389	rs4833291	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	4q28.1		rs4833291-C	NR	3E-9		0.0222	[0.015-0.029] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
1536	chr4	124710583	124710584	rs7692299	28232668	Yu Y	2017-02-24	Nat Commun	Genome-wide analyses of non-syndromic cleft lip with palate identify 14 novel loci and genetic heterogeneity.	Nonsyndromic cleft lip with cleft palate	2,033 Han Chinese ancestry cases, 4,051 Han Chinese ancestry controls	1,346 Han Chinese ancestry cases, 4,542 Han Chinese ancestry controls	4q28.1	NR	rs7692299-A	0.06	9E-7		1.32		Illumina [803202]	N
1536	chr4	124727523	124727524	rs58530613	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	4q28.1	LINC01091	rs58530613-C	0.1119	3E-9		0.03460187	[0.023-0.046] unit increase	Affymetrix [~ 2500000] (imputed)	N
1536	chr4	124743258	124743259	rs1347188	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	4q28.1	SPRY1	rs1347188-A	0.754204	2E-9		0.0139717	[0.0094-0.0185] unit decrease	Affymetrix [NR] (imputed)	N
1536	chr4	124746376	124746377	rs2060285	33888516	Zheng T	2021-04-22	Gut	Genome-wide analysis of 944 133 individuals provides insights into the etiology of haemorrhoidal disease.	Haemorrhoidal disease	218,920 European ancestry cases, 725,213 European ancestry controls	NA	4q28.1	intergenic	rs2060285-?	0.3365	4E-9		1.02	[1.02-1.03]	Affymetrix, Illumina [8494288] (imputed)	N
1536	chr4	124746376	124746377	rs2060285	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	4q28.1	NR	rs2060285-A	0.326134	2E-14		0.0253784	[0.019-0.032] unit increase	NR [19129689] (imputed)	N
1536	chr4	124756519	124756520	rs77173582	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	4q28.1	NR	rs77173582-T	0.110039	2E-10		0.019625	[0.014-0.026] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
1536	chr4	124756519	124756520	rs77173582	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	4q28.1	NR	rs77173582-T	0.110932	1E-12		0.020814	[0.015-0.027] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
1536	chr4	124758772	124758773	rs58148580	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	4q28.1		rs58148580-T	NR	1E-13		0.0255	[0.019-0.032] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1536	chr4	124758772	124758773	rs58148580	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	4q28.1	SPRY1	rs58148580-C	0.890219	1E-10		0.0214703	[0.015-0.028] unit decrease	Affymetrix [NR] (imputed)	N
1536	chr4	124765262	124765264	rs138780918	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	4q28.1	LINC01091	rs138780918-A	0.109355	3E-10		0.02226541	[0.015-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
1536	chr4	124765262	124765264	rs138780918	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	4q28.1	intergenic	rs138780918-A		2E-11		0.024	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
1536	chr4	124766955	124766956	rs1433210	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	4q28.1	NR	rs1433210-C	0.24616499999999997	3E-17		0.00803696	[0.0061-0.0099] unit increase	Affymetrix [16582909] (imputed)	N
1536	chr4	124766955	124766956	rs1433210	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	4q28.1	NR	rs1433210-C	0.245263	3E-12		0.0101067	[0.0073-0.0129] unit increase	Affymetrix [16585854] (imputed)	N
1536	chr4	124766955	124766956	rs1433210	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	4q28.1	NR	rs1433210-C	0.24616499999999997	2E-10		0.00665505	[0.0045-0.0088] unit increase	Affymetrix [16582965] (imputed)	N
1536	chr4	124766955	124766956	rs1433210	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	4q28.1	NR	rs1433210-C	0.245263	2E-6		0.0081369	[0.0049-0.0114] unit increase	Affymetrix [16585866] (imputed)	N
1536	chr4	124766955	124766956	rs1433210	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	4q28.1		rs1433210-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1536	chr4	124767506	124767507	rs75211492	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q28.1	NR	rs75211492-T	0.0924402	2E-10				Affymetrix, Illumina [24653286] (imputed)	N
1536	chr4	124767506	124767507	rs75211492	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	4q28.1	NR	rs75211492-T	0.110891	1E-10		0.018905	[0.013-0.025] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
1536	chr4	124770792	124770793	rs5023357	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	4q28.1		rs5023357-G	NR	7E-11		0.0241	[0.017-0.031] unit decrease	Affymetrix, Illumina [20535842] (imputed)	N
1537	chr4	124786262	124786263	rs55665660	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	4q28.1	SPRY1, ANKRD50	rs55665660-T	0.959	6E-7		0.0434329	[0.026-0.06] unit decrease	Illumina [13519193] (imputed)	N
1537	chr4	124794643	124794644	rs3097937	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	NA	4q28.1	LINC01091	rs3097937-A	0.8026	5E-9		0.2226	[0.15-0.3] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1537	chr4	124804150	124804151	rs113826451	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	4q28.1	LINC01091	rs113826451-A	0.103537	8E-12		0.025458604	[0.018-0.033] unit increase	Affymetrix [93095623] (imputed)	N
1537	chr4	124819606	124819607	rs62321845	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	4q28.1		rs62321845-?	NR	1E-20				NR [~ 8900000] (imputed)	N
1537	chr4	124843110	124843110	rs199872487	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Tumor necrosis factor alpha levels	3,454 Finnish ancestry individuals	NA	4q28.1	NR	rs199872487-GTATA		9E-6		0.3492	[0.19-0.5] SD units increase	NR [10700000] (imputed)	N
1537	chr4	124843114	124843120	rs202046961	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	beta-nerve growth factor levels	3,531 Finnish ancestry individuals	NA	4q28.1	NR	rs202046961-ATATGTG		8E-6		0.3521	[0.2-0.51] SD units decrease	NR [10700000] (imputed)	N
1537	chr4	124864615	124864616	rs6842970	30583798	Bovijn J	2018-12-21	Am J Hum Genet	GWAS Identifies Risk Locus for Erectile Dysfunction and Implicates Hypothalamic Neurobiology and Diabetes in Etiology.	Erectile dysfunction	6,175 European ancestry male cases, 217,630 European ancestry male controls	NA	4q28.1	NR	rs6842970-?	NR	9E-6				Affymetrix, Illumina [at least 807411] (imputed)	N
1537	chr4	124906256	124906257	rs908822	28232668	Yu Y	2017-02-24	Nat Commun	Genome-wide analyses of non-syndromic cleft lip with palate identify 14 novel loci and genetic heterogeneity.	Nonsyndromic cleft lip with cleft palate	2,033 Han Chinese ancestry cases, 4,051 Han Chinese ancestry controls	1,346 Han Chinese ancestry cases, 4,542 Han Chinese ancestry controls	4q28.1	LOC285419	rs908822-A	0.07	4E-8		1.31		Illumina [803202]	N
1537	chr4	124908230	124908231	rs1519224	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	4q28.1		rs1519224-?	NR	5E-16				NR [~ 8900000] (imputed)	N
1538	chr4	124915278	124915279	rs112000748	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	4q28.1	NR	rs112000748-?	NR	1E-6	(Japanese)	0.2719	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1538	chr4	124925170	124925171	rs79343001	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	4q28.1		rs79343001-A	NR	1E-10		0.0203	[0.014-0.026] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
1538	chr4	124925264	124925265	rs74758868	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	4q28.1		rs74758868-C	0.059362	2E-10		0.030539548	[0.021-0.04] unit increase	Affymetrix [93095623] (imputed)	N
1538	chr4	124936529	124936530	rs6818091	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	4q28.1		rs6818091-G	0.43	7E-10		6.17	z score increase	Affymetrix [9061022] (imputed)	N
1538	chr4	124939253	124939254	rs4833967	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	4q28.1		rs4833967-T	NR	1E-14		0.011	[0.0083-0.0137] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1538	chr4	124946032	124946032	rs35912034	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	4q28.1		rs35912034-CT	0.298115	2E-9		0.0131409	[0.0088-0.0174] unit increase	Illumina [13479295] (imputed)	N
1538	chr4	124946032	124946032	rs35912034	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	4q28.1	LINC01091, LOC101927087	rs35912034-?	NR	1E-10		0.019960506	[0.014-0.026] unit increase	Illumina [27896057] (imputed)	N
1538	chr4	124957111	124957112	rs10518426	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	4q28.1	intergenic	rs10518426-T	0.5838	3E-22		0.0186	[0.015-0.022] unit decrease	Affymetrix [18391927] (imputed)	N
1538	chr4	124965261	124965262	rs1850756	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	4q28.1	NR	rs1850756-C	0.329351	1E-11		0.0484746	[0.034-0.063] unit increase	Affymetrix [17914406] (imputed)	N
1538	chr4	124975231	124975232	rs6842789	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Neuroticism	170,911 European ancestry individuals	NA	4q28.1	NR	rs6842789-A	0.14	4E-6		0.02267423	[0.013-0.032] unit decrease	Affymetrix [up to 6544775] (imputed)	N
1538	chr4	125039895	125039896	rs13132681	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	4q28.1	CTD-2325B11.1	rs13132681-A	NR	1E-8		0.0163272	[0.011-0.022] unit increase	Affymetrix [319769] (imputed)	N
1538	chr4	125039895	125039896	rs13132681	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	4q28.1	CTD-2325B11.1	rs13132681-A	NR	7E-9		0.0166682	[0.011-0.022] unit increase	Affymetrix [319769] (imputed)	N
1538	chr4	125039895	125039896	rs13132681	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	4q28.1	NR	rs13132681-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
1539	chr4	125077862	125077863	rs11098739	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	4q28.1		rs11098739-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1539	chr4	125120345	125120346	rs757056100	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	4q28.1	CTD-2325B11.1	rs757056100-A	0.0095	9E-6		0.5479	[0.31-0.79] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1539	chr4	125130439	125130440	rs6857137	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	4q28.1		rs6857137-?	NR	8E-12				NR [~ 8900000] (imputed)	N
1539	chr4	125130439	125130440	rs6857137	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	4q28.1	NR	rs6857137-G	0.489688	4E-12		0.0214497	[0.015-0.028] unit increase	NR [19129689] (imputed)	N
1540	chr4	125182689	125182690	rs1520325	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	4q28.1	NR	rs1520325-T	0.2288	6E-13		0.0147	[0.011-0.019] unit increase	NR [~ 27400000] (imputed)	N
1540	chr4	125182689	125182690	rs1520325	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	4q28.1	SPRY1	rs1520325-?	NR	6E-6	(uric acid)	0.20649561	[0.12-0.3] unit increase	Affymetrix [at least 2500000] (imputed)	N
1540	chr4	125191762	125191763	rs80063346	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	4q28.1	NR	rs80063346-?	NR	1E-11				Affymetrix [~ 8270000] (imputed)	N
1540	chr4	125220707	125220708	rs11726981	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	4q28.1		rs11726981-?	NR	8E-12				NR [~ 8900000] (imputed)	N
1540	chr4	125220707	125220708	rs11726981	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	4q28.1	NR	rs11726981-C	0.27	1E-13		0.015	[0.011-0.019] unit increase	Affymetrix [2446094] (imputed)	N
1540	chr4	125220707	125220708	rs11726981	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	4q28.1	NR	rs11726981-C	0.27	5E-8				Affymetrix [2446094] (imputed)	N
1540	chr4	125265312	125265313	rs2125000	23377640	GENDEP Investigators	2013-02-01	Am J Psychiatry	Common genetic variation and antidepressant efficacy in major depressive disorder: a meta-analysis of three genome-wide pharmacogenetic studies.	Major depressive disorder	Up to 2,256 European ancestry cases	NA	4q28.1	intergenic	rs2125000-T	0.307	3E-6	(remission - 12 weeks)	1.425	[1.27-1.58]	Affymetrix, Illumina [1200000] (imputed)	N
1541	chr4	125351060	125351061	rs78924360	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Trunk fat mass	3,399 whole genome sequenced individuals, 12,838 European ancestry individuals	10,667 European ancestry individuals	4q28.1	RP11-93I21.2	rs78924360-A	0.9918	5E-6		0.3621	[0.21-0.52] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1541	chr4	125415533	125415534	rs6534441	23377640	GENDEP Investigators	2013-02-01	Am J Psychiatry	Common genetic variation and antidepressant efficacy in major depressive disorder: a meta-analysis of three genome-wide pharmacogenetic studies.	Major depressive disorder	Up to 2,256 European ancestry cases	NA	4q28.1	intergenic	rs6534441-C	0.3328325	7E-6	(% improvement - SSRI treated - 12 weeks)	0.1801	[0.1-0.26] unit decrease	Affymetrix, Illumina [1200000] (imputed)	N
1542	chr4	125451363	125451364	rs10029005	31383772	Yan C	2019-08-05	Gut	Meta-analysis of genome-wide association studies and functional assays decipher susceptibility genes for gastric cancer in Chinese populations.	Gastric cancer	3,771 Chinese ancestry cases, 5,426 Chinese ancestry controls	7,035 Chinese ancestry cases, 8,323 Chinese ancestry controls	4q28.1	LOC285419, ANKRD50	rs10029005-A	0.33	3E-11		1.14	[1.10-1.19]	Affymetrix, Illumina [6192596] (imputed)	N
1542	chr4	125457122	125457123	rs11937064	33002439	Jin G	2020-10-01	Lancet Oncol	Genetic risk, incident gastric cancer, and healthy lifestyle: a meta-analysis of genome-wide association studies and prospective cohort study.	Gastric cancer	10,254 Han Chinese ancestry cases, 10,914 Han Chinese ancestry controls	NA	4q28.1	NR	rs11937064-A	0.67	9E-10		0.87	NR	Affymetrix, Illumina [6957974] (imputed)	N
1542	chr4	125469722	125469723	rs7670821	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	4q28.1		rs7670821-G	0.32	1E-10		6.42	z score increase	Affymetrix [9061022] (imputed)	N
1542	chr4	125497912	125497913	rs12643325	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Longevity	up to 482,000 European ancestry individuals	NA	4q28.1	NR	rs12643325-A	NR	9E-6		0.01937	[0.011-0.028] unit increase	Illumina [~ 540852]	N
1542	chr4	125499905	125499906	rs13147255	34302048	Qu HQ	2021-07-23	Commun Biol	Genetic architecture of type 1 diabetes with low genetic risk score informed by 41 unreported loci.	Type 1 diabetes with low genetic risk score	957 European ancestry cases, 12,323 European ancestry controls	NA	4q28.1	NR	rs13147255-A	NR	1E-8		1.318	[1.198-1.449]	Illumina [104689647] (imputed)	N
1542	chr4	125521338	125521339	rs7681056	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	4q28.1	LOC101927087	rs7681056-T	0.687971	3E-11		0.0132963	[0.0094-0.0172] unit decrease	NR [13737936] (imputed)	N
1542	chr4	125540492	125540492	rs34571451	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	4q28.1		rs34571451-?	NR	8E-13		0.015249	[0.011-0.02] unit decrease	Affymetrix [20259828] (imputed)	N
1542	chr4	125565278	125565279	rs192427471	28753643	Yeo A	2017-07-28	PLoS One	Pharmacogenetic meta-analysis of baseline risk factors, pharmacodynamic, efficacy and tolerability endpoints from two large global cardiovascular outcomes trials for darapladib.	Major coronary event in darapladib-treated cardiovascular disease (time to event)	1,318 European, African American, Asian and other ancestry cases	NA	4q28.1	intergenic	rs192427471-T	0.024	6E-9		2.04	[1.61-2.56]	Affymetrix, Illumina [9334585] (imputed)	N
1542	chr4	125565278	125565279	rs192427471	28753643	Yeo A	2017-07-28	PLoS One	Pharmacogenetic meta-analysis of baseline risk factors, pharmacodynamic, efficacy and tolerability endpoints from two large global cardiovascular outcomes trials for darapladib.	Major coronary event in cardiovascular disease (time to event) (darapladib treatment interaction)	1,318 European, African American, Asian and other ancestry darapladib-treated cases, 1,440 European, African American, Asian and other ancestry placebo-treated cases	NA	4q28.1	intergenic	rs192427471-T	0.024	2E-6				Affymetrix, Illumina [9334585] (imputed)	N
1543	chr4	125682421	125682422	rs184472829	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	4q28.1	NR	rs184472829-?	NR	2E-8				Illumina [7760689] (imputed)	N
1544	chr4	125727538	125727539	rs7657250	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	4q28.1	NR	rs7657250-?	NR	1E-7				Illumina [at least 7383741] (imputed)	N
1544	chr4	125740708	125740709	rs140913323	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cerebrospinal fluid AB1-42 levels	up to 189 European and other ancestry early mild cognitive impairment cases,  up to 251 European and other ancestry late mild cognitive impairment cases,  up to 121 European and other ancestry Alzheimer's disease cases,  up to 215 European and other ancestry healthy controls	up to 3 European and other ancestry significant memory concern cases,  up to 57 European and other ancestry early mild cognitive impairment cases,   up to 61 European and other ancestry late mild cognitive impairment cases,  up to 62 European and other ancestry Alzheimer's disease cases,  up to 21 European and other ancestry healthy controls	4q28.1	ANKRD50, FAT4	rs140913323-T	0.02	6E-7		0.4822	[NR] unit increase	Illumina [~ 9000000] (imputed)	N
1544	chr4	125781633	125781634	rs73845815	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mononucleosis	17,457 European ancestry cases, 68,446 European ancestry controls	NA	4q28.1	NR	rs73845815-?	NR	8E-6		1.3776	[0.65-2.11] unit decrease	Illumina [at least 560000] (imputed)	N
1545	chr4	125864318	125864319	rs10022344	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	4q28.1	NR	rs10022344-?	NR	4E-6				Illumina [at least 7383741] (imputed)	N
1545	chr4	125899964	125899965	rs13102675	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	4q28.1	intergenic	rs13102675-T	0.639	9E-7		0.032	[0.018-0.046] unit decrease	Affymetrix [7947838] (imputed)	N
1545	chr4	125906867	125906868	rs116391347	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q28.1	NR	rs116391347-A	0.01045	9E-9	(TTN)	1.287	NR unit increase	Illumina [1671387] (imputed)	N
1545	chr4	125906867	125906868	rs116391347	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q28.1	NR	rs116391347-A	0.01045	2E-8	(CA1)	2.819	NR unit increase	Illumina [1671387] (imputed)	N
1545	chr4	125935252	125935253	rs538210571	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Small vessel stroke	333 Indian ancestry cases, 2,154 Indian ancestry controls	NA	4q28.1		rs538210571-?	NR	8E-6		1.2004721	[1.10801957485215-1.3006387620167]	Illumina [7827597] (imputed)	N
1546	chr4	125976651	125976652	rs6534458	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	4q28.1	ANKRD50	rs6534458-?	NR	3E-6	(uric acid)	0.4734504	[0.27-0.67] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1546	chr4	125993501	125993502	rs1986655	19414484	Johnson AD	2009-05-04	Hum Mol Genet	Genome-wide association meta-analysis for total serum bilirubin levels.	Bilirubin levels	9,464 individuals	NA	4q28.1	intergenic	rs1986655-A	0.17	2E-6		0.02	[0.00-0.04] umol/l decrease in log(tbil)	Affymetrix, Illumina [2555103] (imputed)	N
1546	chr4	126032218	126032219	rs13103633	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	4q28.1	NR	rs13103633-?	NR	9E-6				Illumina [at least 7383741] (imputed)	N
1546	chr4	126077142	126077143	rs78868369	29123153	Lee TH	2017-11-09	Sci Rep	A genome-wide association study links small-vessel ischemic stroke to autophagy.	Small vessel stroke	342 Chinese ancestry cases, 1,731 Chinese ancestry control	188 Chinese ancestry cases, 1,265 Chinese ancestry control	4q28.1	ANKRD50, FAT4	rs78868369-T	0.08595	8E-6		1.575	[1.288-1.927]	Affymetrix [552090] (imputed)	N
1547	chr4	126133078	126133079	rs4130333	33109212	Chang H	2020-10-28	BMC Med	Genetic architecture of cardiometabolic risks in people living with HIV.	Triglyceride levels in HIV infection	3,095 European ancestry individuals, 3,189 African American individuals	NA	4q28.1	ANKRD50, FAT4	rs4130333-?		5E-6	(EA)	0.16636615	[0.095-0.238] unit increase	Illumina [13620258] (imputed)	N
1547	chr4	126133078	126133079	rs4130333	33109212	Chang H	2020-10-28	BMC Med	Genetic architecture of cardiometabolic risks in people living with HIV.	Triglyceride levels in HIV infection	3,095 European ancestry individuals, 3,189 African American individuals	NA	4q28.1	ANKRD50, FAT4	rs4130333-?		5E-6	(African American)	0.16636615	[0.095-0.238] unit increase	Illumina [13620258] (imputed)	N
1548	chr4	126267342	126267343	rs2710596	30279531	Baselmans BML	2018-10-02	Sci Rep	A genetic perspective on the relationship between eudaimonic -and hedonic well-being.	Eudaimonic well-being	108,154 British ancestry individuals	NA	4q28.1	NR	rs2710596-T	0.558843	5E-6		4.55649	[NR] z score decrease	Affymetrix [~ 8600000] (imputed)	N
1548	chr4	126272904	126272905	rs2710545	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	4q28.1	ANKRD50	rs2710545-?	NR	2E-7	(glycerol)	0.354349	[0.22-0.49] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1549	chr4	126359455	126359456	rs1395241	20351715	Liu Y	2010-03-30	Mol Psychiatry	Meta-analysis of genome-wide association data of bipolar disorder and major depressive disorder.	Bipolar disorder or major depressive disorder	4,387 European and unknown ancestry bipolar disorder cases, 1,695 major depressive disorder cases, 7,970 European and unknown ancestry controls	NA	4q28.1	FAT4	rs1395241-?	NR	8E-6				Affymetrix, Perlegen [1472580] (imputed)	N
1549	chr4	126367985	126367986	rs10084892	29724592	Pottier C	2018-04-30	Lancet Neurol	Potential genetic modifiers of disease risk and age at onset in patients with frontotemporal lobar degeneration and GRN mutations: a genome-wide association study.	Memory dysfunction in frontotemporal lobe dementia	139 European ancestry cases, 243 European ancestry controls	NA	4q28.1	FAT4	rs10084892-C	0.1	9E-6		2.94	[2.47-3.41]	Illumina [7033776] (imputed)	N
1549	chr4	126396269	126396270	rs1857901	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (multi-trait analysis)	90,939 European ancestry individuals	NA	4q28.1	FAT4	rs1857901-G	0.64	3E-10		0.0056	NR unit increase	Affymetrix, Illumina [8002429] (imputed)	N
1549	chr4	126396269	126396270	rs1857901	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (adjusted for vertical disc diameter)	67,040 British ancestry individuals	NA	4q28.1	FAT4	rs1857901-G	0.64	2E-7		0.0048	NR unit increase	Affymetrix [at least 8002429] (imputed)	N
1549	chr4	126415913	126415914	rs4314296	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	4q28.1	ANKRD50	rs4314296-?	NR	4E-6	(glycerol)	0.3387185	[0.19-0.48] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1549	chr4	126426694	126426695	rs12639834	19734545	Need AC	2009-09-04	Hum Mol Genet	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA	4q28.1	FAT4	rs12639834-?	0.358	6E-6	(SWM strategy)			Illumina [475971]	N
1549	chr4	126431918	126431919	rs950063	19247474	Caporaso N	2009-02-27	PLoS One	Genome-wide and candidate gene association study of cigarette smoking behaviors.	Smoking behavior	2,617 European ancestry smokers, 1,725 European ancestry controls	NA	4q28.1	intergenic	rs950063-?	0.39	9E-6	(SMKDU)	0.08	[NR] years decrease	Illumina [~ 518000]	N
1550	chr4	126546159	126546160	rs79076829	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia	11,197 European ancestry low myopic cases, 21,416 European ancestry emmetropia controls	NA	4q28.1	NR	rs79076829-?	NR	5E-6		0.516753	[0.29-0.74] unit decrease	NR [13958389] (imputed)	N
1550	chr4	126572872	126572873	rs192613850	32890573	Yan Q	2020-09-02	J Allergy Clin Immunol	A genome-wide association study of asthma hospitalizations in adults.	Exacerbations requiring hospitalisation in asthma	1,658 British ancestry cases, 32,509 British ancestry controls	NA	4q28.1	NR	rs192613850-A	0.99	8E-6		1.82	[NR]	Affymetrix [87696888] (imputed)	N
1551	chr4	126625038	126625039	rs200340559	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	4q28.1	intergenic	rs200340559-T	0.0114866768213037	4E-6	(G_Eisenbergiella_RNT)	1.0281	[0.59-1.47] unit increase	Illumina [7711310] (imputed)	N
1551	chr4	126629206	126629207	rs35356449	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Caudal anterior-cingulate cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	4q28.1	NR	rs35356449-?		2E-6				Illumina [4322238] (imputed)	N
1551	chr4	126696421	126696422	rs4488951	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Insular cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	4q28.1	NR	rs4488951-?		3E-6				Illumina [4322238] (imputed)	N
1551	chr4	126712044	126712045	rs11728629	32131869	Arbeeva L	2020-03-04	J Foot Ankle Res	Genome-wide meta-analysis identified novel variant associated with hallux valgus in Caucasians.	Hallux valgus	2,314 European ancestry cases, 3,611 European ancestry controls	NA	4q28.1	RP11-404I7.1	rs11728629-T	0.24	1E-6		1.26	[1.15-1.38]	Affymetrix, Illumina [up to 7729175] (imputed)	N
1551	chr4	126722619	126722620	rs4423886	26911590	Mullin BH	2016-02-25	BMC Genomics	Genome-wide association study using family-based cohorts identifies the WLS and CCDC170/ESR1 loci as associated with bone mineral density.	Bone mineral density (spine)	1,042 Northern European ancestry individuals	5,654 Northern European ancestry individuals	4q28.1	FAT4	rs4423886-C	0.19	3E-7		0.21	[0.13-0.29] g/cm2 decrease	Illumina [NR] (imputed)	N
1551	chr4	126724538	126724539	rs79325054	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	4q28.1	NR	rs79325054-A	0.097	1E-6	(IFNalpha_ABC_of_CD20p)			Illumina [5084123] (imputed)	N
1551	chr4	126741799	126741800	rs76699517	31996736	Elsheikh SSM	2020-01-29	Sci Rep	Genome-Wide Association Study of Brain Connectivity Changes for Alzheimer's Disease.	Longitudinal brain connectivity change (global efficiency)	57 European ancestry individuals	NA	4q28.1	NR	rs76699517-T	NR	6E-11		6.53	z score decrease	NR [9015039] (imputed)	N
1551	chr4	126746228	126746229	rs114045002	31996736	Elsheikh SSM	2020-01-29	Sci Rep	Genome-Wide Association Study of Brain Connectivity Changes for Alzheimer's Disease.	Longitudinal brain connectivity change (characteristic path length)	57 European ancestry individuals	NA	4q28.1	NR	rs114045002-C	NR	2E-11		6.73	z score decrease	NR [9015039] (imputed)	N
1552	chr4	126825377	126825378	rs7665589	34130359	Curtis SW	2021-06-15	Genet Epidemiol	FAT4 identified as a potential modifier of orofacial cleft laterality.	Left unilateral cleft lip	68 Asian ancestry cases, 78 European ancestry cases, 70 Hispanic cases, 1,626 controls	NA	4q28.1	NR	rs7665589-?		1E-6		1.88	[1.46-2.44]	Illumina [539473] (imputed)	N
1552	chr4	126843503	126843504	rs77528541	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	4q28.1		rs77528541-T	NR	7E-10		0.94	[0.93-0.96]	Affymetrix, Illumina [NR] (imputed)	N
1552	chr4	126843503	126843504	rs77528541	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	4q28.1	intergenic	rs77528541-G	0.87	1E-9	(EA)	1.0526316	[1.03-1.09] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
1552	chr4	126859547	126859548	rs13113956	29855537	Hirata T	2018-05-31	Sci Rep	Japanese GWAS identifies variants for bust-size, dysmenorrhea, and menstrual fever that are eQTLs for relevant protein-coding or long non-coding RNAs.	Menstruation quality of life impact (loss of concentration)	995 Japanese ancestry female cases, 4,739 Japanese ancestry female controls	1,081 Japanese ancestry female cases, 4,533 Japanese ancestry female controls	4q28.1	NR	rs13113956-A	0.26968404	3E-6		0.18722807	[0.11-0.27] unit decrease	Affymetrix [536506]	N
1553	chr4	126924998	126924999	rs17824374	33888516	Zheng T	2021-04-22	Gut	Genome-wide analysis of 944 133 individuals provides insights into the etiology of haemorrhoidal disease.	Haemorrhoidal disease	218,920 European ancestry cases, 725,213 European ancestry controls	NA	4q28.1	intergenic	rs17824374-?	0.19799999999999995	3E-11		0.97	[0.96-0.98]	Affymetrix, Illumina [8494288] (imputed)	N
1553	chr4	126925066	126925094	rs66475849	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Uterine prolapse	10,647 European ancestry cases, 224,175 European ancestry controls, 423 East Asian ancestry cases, 82,338 East Asian ancestry controls	NA	4q28.1		rs66475849-A	NR	4E-17		0.1594	[0.12-0.2] unit increase	Affymetrix, Illumina [25752093] (imputed)	N
1553	chr4	126933291	126933292	rs1320267	17903303	O'Donnell CJ	2007-09-19	BMC Med Genet	Genome-wide association study for subclinical atherosclerosis in major arterial territories in the NHLBI's Framingham Heart Study.	Subclinical atherosclerosis traits (other)	Up to 984 individuals	NA	4q28.1	intergenic	rs1320267-?	NR	7E-6	(ABI)			Affymetrix [70897]	N
1553	chr4	126935474	126935475	rs6852838	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 24)	4,680 European ancestry individuals	3,566 European ancestry individuals	4q28.1		rs6852838-G	0.195372189	4E-11				Illumina [7417619] (imputed)	N
1553	chr4	126954651	126954652	rs145365164	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Chin dimples	58,032 European ancestry cases, 13,457 European ancestry controls	NA	4q28.1	FAT4	rs145365164-?	NR	1E-8		1.109	[1.070-1.148]	Illumina [13537761] (imputed)	N
1553	chr4	126958371	126958372	rs7682992	32184442	Olafsdottir T	2020-03-17	Commun Biol	Genome-wide association identifies seven loci for pelvic organ prolapse in Iceland and the UK Biobank.	Pelvic organ prolapse	15,010 European ancestry cases, 340,734 European ancestry controls	NA	4q28.1	FAT4	rs7682992-T	0.2063	5E-16		1.13	[1.10-1.16]	Affymetrix, Illumina [37144863] (imputed)	N
1553	chr4	126966881	126966882	rs35584094	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	4q28.1		rs35584094-A	NR	2E-9		0.0092	[0.0063-0.0121] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1553	chr4	126996869	126996870	rs12509991	25628645	Tong Y	2015-01-13	Front Genet	Identification of genetic variants or genes that are associated with Homoharringtonine (HHT) response through a genome-wide association study in human lymphoblastoid cell lines (LCLs).	Response to Homoharringtonine (cytotoxicity)	93 African American ancestry lymphoblastoid cell lines, 91 European ancestry lymphoblastoid cell lines, 94 Han Chinese ancestry lymphoblastoid cell lines	NA	4q28.1	intergenic	rs12509991-?		3E-7				Affymetrix, Illumina [6750581] (imputed)	N
1556	chr4	127323307	127323308	rs142200419	26030696	Cho MH	2015-06-01	Am J Respir Crit Care Med	A Genome-Wide Association Study of Emphysema and Airway Quantitative Imaging Phenotypes.	Airway imaging phenotypes	5,385 European ancestry chronic obstructive pulmonary disease cases, 901 African American chronic obstructive pulmonary disease cases, 3,613 European ancestry controls, 2,132 African American controls	NA	4q28.1	MIR2054	rs142200419-T	NR	5E-9	(WAP, All)	0.24	[-1.72-2.2] unit increase	Illumina [7600000] (imputed)	N
1556	chr4	127336601	127336602	rs11098863	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (genus Enterorhabdus id.820)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	4q28.1		rs11098863-T	NR	3E-9		5.928537	z score decrease	Affymetrix, Illumina [NR] (imputed)	N
1556	chr4	127363096	127363097	rs12498806	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Hippocampal sclerosis	310 cases, 2,576 controls	NA	4q28.1	intergenic	rs12498806-C	0.9832	5E-6		1.2967	[0.74-1.85] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1557	chr4	127415515	127415516	rs58302722	32131869	Arbeeva L	2020-03-04	J Foot Ankle Res	Genome-wide meta-analysis identified novel variant associated with hallux valgus in Caucasians.	Hallux valgus	2,314 European ancestry cases, 3,611 European ancestry controls	NA	4q28.1	RP11-404I7.1	rs58302722-A	0.02	3E-6		1.82	[1.42-2.34]	Affymetrix, Illumina [up to 7729175] (imputed)	N
1557	chr4	127448951	127448952	rs62321667	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	4q28.1	MIR2054	rs62321667-G	0.880178	2E-15		0.0225749	[0.017-0.028] unit increase	NR [13737936] (imputed)	N
1557	chr4	127479251	127479252	rs143267092	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Sensorimotor dexterity	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	4q28.1	intergenic	rs143267092-G	NR	6E-6		0.16356115	[0.091-0.236] unit decrease	Illumina [> 6200000] (imputed)	N
1557	chr4	127528391	127528392	rs313146	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	4q28.1		rs313146-?	NR	4E-14				NR [~ 8900000] (imputed)	N
1557	chr4	127528391	127528392	rs313146	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	4q28.1		rs313146-?	NR	8E-14		0.015571	[0.011-0.02] unit decrease	Affymetrix [20259828] (imputed)	N
1557	chr4	127528505	127528506	rs72921443	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	4q28.1		rs72921443-?	NR	3E-15		0.0282767	[0.021-0.036] unit increase	Affymetrix [20259828] (imputed)	N
1558	chr4	127537733	127537734	rs313135	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	4q28.1	NR	rs313135-T	0.4841	6E-7	(Postcentral)	10.832664	[6.57-15.1] unit increase	Affymetrix, Illumina [NR]	N
1558	chr4	127538810	127538811	rs140574374	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Endometriosis (MTAG)	645 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	4q28.1	Intergenic	rs140574374-?		6E-6		1.11	[1.06-1.16]	Illumina [7645193] (imputed)	N
1558	chr4	127538810	127538811	rs140574374	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Endometriosis	645 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	4q28.1	Intergenic	rs140574374-?		7E-6		2.58	[1.71-3.90]	Illumina [7645193] (imputed)	N
1558	chr4	127577100	127577100	rs542533021	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Alcohol consumption x traumatic event in childhood (felt hated by family member) interaction	46,394 European ancestry individuals	NA	4q28.1		rs542533021-?	NR	1E-8		2.2841	[1.5-3.07] unit increase	Affymetrix [NR] (imputed)	N
1558	chr4	127579681	127579682	rs72921478	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	4q28.1		rs72921478-T	0.08	1E-9		6.11	z score increase	Affymetrix [9061022] (imputed)	N
1558	chr4	127579681	127579682	rs72921478	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	4q28.1	NR	rs72921478-T	0.0849	1E-10				NR [9056863] (imputed)	N
1559	chr4	127749953	127749954	rs62322229	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	4q28.1	intergenic	rs62322229-A	NR	6E-6	(G_Faecalitalea_HB)	1.00104	[0.57-1.44] unit increase	Illumina [7711310] (imputed)	N
1559	chr4	127772367	127772368	rs1503613	33037222	Sieh W	2020-10-09	Nat Commun	Identification of 31 loci for mammographic density phenotypes and their associations with breast cancer risk.	Mammographic density (dense area)	24,192 European ancestry individuals	NA	4q28.1		rs1503613-?	NR	6E-10		0.054	[0.036-0.072] unit increase	Affymetrix [9906178] (imputed)	N
1559	chr4	127787714	127787715	rs187716232	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	KLE1615 sp900066985 abundance in stool	5,959 Finnish ancestry individuals	NA	4q28.1		rs187716232-T	0.0106007	3E-8		0.307498	[0.2-0.42] unit decrease	Illumina [7980478] (imputed)	N
1559	chr4	127787714	127787715	rs187716232	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	KLE1615 abundance in stool	5,959 Finnish ancestry individuals	NA	4q28.1		rs187716232-T	0.0106007	9E-9		0.370633	[0.24-0.5] unit decrease	Illumina [7980478] (imputed)	N
1560	chr4	127860358	127860359	rs17274880	31763980	Xiong Z	2019-11-25	Elife	Novel genetic loci affecting facial shape variation in humans.	Facial morphology	10,115 European ancestry individuals	NA	4q28.1	INTU	rs17274880-C	0.37	2E-8	(left alare-right alare distance)	0.081	NR unit decrease	Illumina [7029494] (imputed)	N
1561	chr4	127926514	127926515	rs56049331	31763980	Xiong Z	2019-11-25	Elife	Novel genetic loci affecting facial shape variation in humans.	Facial morphology	10,115 European ancestry individuals	NA	4q28.1	INTU	rs56049331-G	0.39	2E-9	(pronasale-right alare distance)	0.086	NR unit decrease	Illumina [7029494] (imputed)	N
1561	chr4	127928592	127928593	rs62324070	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 2)	4,680 European ancestry individuals	3,566 European ancestry individuals	4q28.1		rs62324070-A	0.365185505	3E-29				Illumina [7417619] (imputed)	N
1561	chr4	127943377	127943378	rs148322426	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	4q28.1		rs148322426-T	0.38	5E-10		6.21	z score increase	Affymetrix [9061022] (imputed)	N
1561	chr4	127948195	127948196	rs12504954	31763980	Xiong Z	2019-11-25	Elife	Novel genetic loci affecting facial shape variation in humans.	Facial morphology	10,115 European ancestry individuals	NA	4q28.1	INTU	rs12504954-A	NR	3E-10	(pronasale-left alare distance)	0.09	NR unit decrease	Illumina [7029494] (imputed)	N
1561	chr4	127997883	127997884	rs62335486	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	4q28.1		rs62335486-T	0.23	1E-20		9.31	z score increase	Affymetrix [9061022] (imputed)	N
1561	chr4	128022303	128022304	rs13123189	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	4q28.1	NR	rs13123189-A	0.4636	5E-9				NR [9056863] (imputed)	N
1561	chr4	128045534	128045535	rs13150739	34177598	Wolking S	2021-06-09	Front Pharmacol	Role of Common Genetic Variants for Drug-Resistance to Specific Anti-Seizure Medications.	Response to carbamazepine in focal epilepsy	424 European ancestry cases, 591 European ancestry controls	NA			rs13150739-?	NR	9E-7				Illumina [NR] (imputed)	N
1562	chr4	128094308	128094309	rs9307594	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	4q28.1		rs9307594-G	NR	3E-8		0.0105	[0.0068-0.0142] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
1562	chr4	128112222	128112223	rs56003217	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	4q28.1		rs56003217-G	0.26	4E-8		5.51	z score increase	Affymetrix [9061022] (imputed)	N
1562	chr4	128113423	128113424	rs6831679	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	35,422 individuals (>=25 years old)	NA	4q28.1		rs6831679-A	NR	8E-9		0.0129	[0.0088-0.017] mm increase	Affymetrix, Illumina [8936601] (imputed)	N
1562	chr4	128113423	128113424	rs6831679	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	29,580 European ancestry individuals, 14,462 Asian ancestry individuals	88,218 European ancestry individuals	4q28.1		rs6831679-A	0.28	1E-18		0.008	mm increase	Affymetrix, Illumina [8936601] (imputed)	N
1562	chr4	128113423	128113424	rs6831679	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	29,580 European ancestry individuals	NA	4q28.1		rs6831679-A	0.27	3E-7		0.013	mm increase	Affymetrix, Illumina [8936601] (imputed)	N
1562	chr4	128164478	128164479	rs1443065	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	4q28.1		rs1443065-G	NR	1E-13		0.0137	[0.01-0.017] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
1563	chr4	128192679	128192680	rs35589286	33037222	Sieh W	2020-10-09	Nat Commun	Identification of 31 loci for mammographic density phenotypes and their associations with breast cancer risk.	Percent mammographic density	24,192 European ancestry individuals	NA	4q28.1		rs35589286-?	NR	2E-8		0.045	[0.029-0.061] unit increase	Affymetrix [9906178] (imputed)	N
1563	chr4	128284962	128284963	rs62335202	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	4q28.1		rs62335202-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1564	chr4	128320907	128320908	rs1443170	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	4q28.1	LOC729424	rs1443170-G	0.0030	9E-6	(Estradiol )	0.03	[NR] pg/mL increase	Illumina [899892]	N
1564	chr4	128342119	128342120	rs724950	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	4q28.1	NR	rs724950-C	NR	1E-11		0.0162	[0.011-0.021] unit increase	Affymetrix [9000000] (imputed)	N
1564	chr4	128342119	128342120	rs724950	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	4q28.1	NR	rs724950-C	NR	3E-12		0.0166	[0.012-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
1564	chr4	128342119	128342120	rs724950	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	4q28.1	NR	rs724950-C	NR	3E-12		0.0166	[0.012-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
1564	chr4	128342119	128342120	rs724950	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	4q28.1	LOC729424	rs724950-A	0.365	8E-6	(RQmax)	0.04	[NR] increase	Illumina [899892]	N
1564	chr4	128361184	128361185	rs34481291	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Alcohol consumption x traumatic event in childhood (felt hated by family member) interaction	46,394 European ancestry individuals	NA	4q28.1		rs34481291-?	NR	8E-9		0.761	[0.5-1.02] unit increase	Affymetrix [NR] (imputed)	N
1565	chr4	128456128	128456129	rs145498761	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	4q28.1		rs145498761-T	0.991	4E-16		0.49	[0.37-0.61] % increase	Affymetrix [NR] (imputed)	N
1565	chr4	128466699	128466700	rs2090104	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	4q28.1	NR	rs2090104-G	0.335522302949062	5E-6	(IGP74)	0.1533	[0.087-0.219] unit decrease	Illumina [~ 2500000] (imputed)	N
1565	chr4	128473456	128473457	rs573113970	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	4q28.1		rs573113970-A	0.00891200000000003	3E-10		0.07610613	[0.053-0.1] unit decrease	Affymetrix [93095623] (imputed)	N
1565	chr4	128510277	128510278	rs186869299	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Rubella	12,000 European ancestry cases, 71,597 European ancestry controls	NA	4q28.1	NR	rs186869299-?	NR	9E-6		0.3124	[0.17-0.45] unit decrease	Illumina [at least 560000] (imputed)	N
1565	chr4	128523963	128523964	rs1399212	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	4q28.1	NR	rs1399212-T	0.9553	3E-7	(Trans/trans-18:2, EA)	0.0029	[0.0017-0.0041] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1565	chr4	128546399	128546400	rs140291958	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	4q28.1		rs140291958-G	NR	8E-17		0.1049	[0.08-0.13] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
1565	chr4	128546399	128546400	rs140291958	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	4q28.1		rs140291958-G	NR	3E-17		0.1062	[0.082-0.131] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
1565	chr4	128546399	128546400	rs140291958	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	4q28.1	NR	rs140291958-G	0.008997	2E-28		0.106988	[0.088-0.126] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1565	chr4	128546399	128546400	rs140291958	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q28.1	NR	rs140291958-G	0.00895364	2E-28				Affymetrix, Illumina [20825802] (imputed)	N
1565	chr4	128546399	128546400	rs140291958	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	4q28.1		rs140291958-?	NR	7E-27				NR [~ 8900000] (imputed)	N
1565	chr4	128568965	128568966	rs181743661	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q28.1	NR	rs181743661-T	0.00877462	8E-26				Affymetrix, Illumina [24246363] (imputed)	N
1565	chr4	128568965	128568966	rs181743661	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	4q28.1	INTU	rs181743661-T	0.0085	5E-9		0.1150042	[0.076-0.154] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1565	chr4	128568965	128568966	rs181743661	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	4q28.1	INTU	rs181743661-T	0.0085	3E-9		0.1167006	[0.078-0.155] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1566	chr4	128652226	128652227	rs4834214	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	4q28.1		rs4834214-?	NR	4E-11				NR [~ 8900000] (imputed)	N
1566	chr4	128710572	128710573	rs75530256	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	4q28.1	HSPA4L	rs75530256-A	0.161273	1E-9		0.018608302	[0.013-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1567	chr4	128757382	128757383	rs187279821	29317602	Hall LS	2018-01-10	Transl Psychiatry	Genome-wide meta-analyses of stratified depression in Generation Scotland and UK Biobank.	Major depressive disorder	6,997 European ancestry female cases, 16,172 European ancestry female controls, 3,852 European ancestry male cases, 16,034 European ancestry male controls	NA	4q28.1	HSPA4L	rs187279821-A	NR	5E-6	(females)	0.42	[0.24-0.6] unit decrease	Affymetrix, Illumina [7105178] (imputed)	N
1567	chr4	128790796	128790797	rs146163318	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	4q28.1		rs146163318-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1567	chr4	128799629	128799630	rs141430271	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	4q28.1	NR	rs141430271-T	0.009189	4E-31		0.117432	[0.098-0.137] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
1567	chr4	128803158	128803159	rs3811741	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	4q28.1	NR	rs3811741-A	NR	2E-9		0.0156	[0.011-0.021] unit increase	Affymetrix [9000000] (imputed)	N
1567	chr4	128843479	128843480	rs1602084	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 2 levels	252 European ancestry individuals	NA	4q28.2		rs1602084-G	NR	9E-6		1.3102	[0.74-1.88] unit increase	Illumina [NR] (imputed)	N
1567	chr4	128843479	128843480	rs1602084	25524916	Palmer ND	2014-12-18	Diabetes	Genetic Variants Associated With Quantitative Glucose Homeostasis Traits Translate to Type 2 Diabetes in Mexican Americans: The GUARDIAN (Genetics Underlying Diabetes in Hispanics) Consortium.	Glucose homeostasis traits	up to 4,176 Mexican American individuals	NA	4q28.2	MFSD8	rs1602084-?		5E-7	(SI+M)	0.43	[0.12-0.74] unit increase	Illumina [693128]	N
1567	chr4	128843479	128843480	rs1602084	25524916	Palmer ND	2014-12-18	Diabetes	Genetic Variants Associated With Quantitative Glucose Homeostasis Traits Translate to Type 2 Diabetes in Mexican Americans: The GUARDIAN (Genetics Underlying Diabetes in Hispanics) Consortium.	Glucose homeostasis traits	up to 4,176 Mexican American individuals	NA	4q28.2	MFSD8	rs1602084-?		3E-6	(SI)	0.43	[0.12-0.74] unit increase	Illumina [693128]	N
1568	chr4	128960248	128960248	rs199621017	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Yeast infection	52,218 European ancestry cases, 10,235 European ancestry controls	NA	4q28.2	NR	rs199621017-?	NR	1E-6		0.0998	[0.059-0.14] unit increase	Illumina [at least 560000] (imputed)	N
1569	chr4	128986402	128986406	rs72083741	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	4q28.2		rs72083741-C	NR	4E-19		0.0189	[0.015-0.023] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
1569	chr4	129003374	129003375	rs148060340	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	4q28.2	LARP1B	rs148060340-G	0.00891699999999995	1E-10		0.077085026	[0.054-0.1] unit decrease	Affymetrix [93095623] (imputed)	N
1569	chr4	129024272	129024273	rs4834232	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	4q28.2	NR	rs4834232-C	0.787	9E-9		0.0272	[0.018-0.036] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1569	chr4	129031570	129031571	rs67868208	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	4q28.2	LARP1B	rs67868208-A	0.37	1E-13		7.4	z-score increase	Affymetrix [4311822] (imputed)	N
1569	chr4	129031787	129031788	rs62334584	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	4q28.2	NR	rs62334584-T	0.620688	6E-16		0.00727347	[0.0056-0.009] unit increase	Affymetrix [16582909] (imputed)	N
1569	chr4	129031787	129031788	rs62334584	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	4q28.2	NR	rs62334584-T	0.620688	3E-11		0.00644897	[0.0046-0.0083] unit increase	Affymetrix [16582965] (imputed)	N
1569	chr4	129043613	129043614	rs3733321	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	4q28.2	NR	rs3733321-T	0.645545	2E-8		0.00746574	[0.0049-0.01] unit increase	Affymetrix [16585854] (imputed)	N
1569	chr4	129043613	129043614	rs3733321	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	4q28.2	NR	rs3733321-T	0.645545	2E-6		0.00724558	[0.0043-0.0102] unit increase	Affymetrix [16585866] (imputed)	N
1569	chr4	129055172	129055172	rs151051122	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	4q28.2		rs151051122-ATT	NR	1E-13		0.0193	[0.014-0.024] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
1569	chr4	129089443	129089444	rs13109814	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	4q28.2	LARP1B	rs13109814-A	0.621128	8E-15		0.0018809	[0.0014-0.0024] unit decrease	Affymetrix [13995440] (imputed)	N
1569	chr4	129099035	129099036	rs143778001	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	4q28.2	LARP1B	rs143778001-C	0.008552	8E-25		0.118539	[0.096-0.141] unit decrease	Affymetrix [93095623] (imputed)	N
1569	chr4	129099035	129099036	rs143778001	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	4q28.2	LARP1B	rs143778001-C	0.00856100000000004	3E-27		0.13102162	[0.11-0.15] unit decrease	Affymetrix [93095623] (imputed)	N
1570	chr4	129179457	129179458	rs12509379	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	4q28.2	NR	rs12509379-G	0.7883	3E-8		0.0312	[0.02-0.042] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
1570	chr4	129227283	129227284	rs77611224	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	4q28.2	RP11-420A23.1	rs77611224-T	0.021972	7E-19		0.06720844	[0.052-0.082] unit decrease	Affymetrix [93095623] (imputed)	N
1570	chr4	129227283	129227284	rs77611224	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	4q28.2	RP11-420A23.1	rs77611224-T	0.021937	1E-9		0.046592627	[0.032-0.062] unit decrease	Affymetrix [93095623] (imputed)	N
1570	chr4	129227283	129227284	rs77611224	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q28.2	NR	rs77611224-A	0.978547	6E-21				Affymetrix, Illumina [22063850] (imputed)	N
1570	chr4	129227283	129227284	rs77611224	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	4q28.2	NR	rs77611224-A	0.977827	2E-23		0.064776	[0.052-0.077] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
1570	chr4	129227283	129227284	rs77611224	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	4q28.2		rs77611224-?	NR	1E-20				NR [~ 8900000] (imputed)	N
1571	chr4	129252050	129252051	rs141332233	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	4q28.2	RP11-420A23.1	rs141332233-A	0.02039	4E-12		0.0552535	[0.04-0.071] unit increase	Affymetrix [93095623] (imputed)	N
1571	chr4	129252050	129252051	rs141332233	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	4q28.2	RP11-420A23.1	rs141332233-A	0.020392	3E-12		0.055507183	[0.04-0.071] unit increase	Affymetrix [93095623] (imputed)	N
1571	chr4	129252050	129252051	rs141332233	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	4q28.2	RP11-420A23.1	rs141332233-A	0.020383	1E-9		0.048535865	[0.033-0.064] unit increase	Affymetrix [93095623] (imputed)	N
1571	chr4	129286602	129286603	rs6822446	29883787	Gregson CL	2018-06-05	Bone	Genome-wide association study of extreme high bone mass: Contribution of common genetic variation to extreme BMD phenotypes and potential novel BMD-associated genes.	Bone mineral density (total hip)	232 European ancestry high BMD individuals, 1,026 European ancestry moderate high BMD individuals, 852 European ancestry low BMD individuals	NA	4q28.2	PGRMC2, JADE1	rs6822446-A	0.18	6E-6		0.259	[0.15-0.37] unit increase	Illumina [6379332] (imputed)	N
1572	chr4	129460093	129460094	rs11930783	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	4q28.2		rs11930783-G	NR	9E-6		1.8701	[1.06-2.68] unit increase	Illumina [NR] (imputed)	N
1572	chr4	129462366	129462367	rs142317896	34241534	Lu Y	2021-07-09	Circ Genom Precis Med	Multiethnic Genome-wide Association Study of Subclinical Atherosclerosis in Individuals with Type 2 Diabetes.	Coronary artery calcification in type 2 diabetes	1,590 African American individuals	NA	4q28.2		rs142317896-C	0.05	2E-7		1.02	[0.63-1.41] unit increase	Affymetrix, Illumina [19600000] (imputed)	N
1572	chr4	129465695	129465696	rs6843448	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	4q28.2	NR	rs6843448-?	NR	8E-6		4.454	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1572	chr4	129474097	129474098	rs17013444	31235810	Fung K	2019-06-24	Sci Rep	Genome-wide association study identifies loci for arterial stiffness index in 127,121 UK Biobank participants.	Arterial stiffness index	127,121 European ancestry individuals	NA	4q28.2	JADE1	rs17013444-T	0.904	6E-6		0.031	[0.017-0.045] unit increase	Affymetrix [~ 10446505] (imputed)	N
1573	chr4	129524512	129524513	rs13151061	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	4q28.2		rs13151061-A	NR	3E-9		0.0124	[0.0083-0.0165] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
1573	chr4	129526995	129526996	rs4975241	28566273	Scott RA	2017-05-31	Diabetes	An Expanded Genome-Wide Association Study of Type 2 Diabetes in Europeans.	Type 2 diabetes	up to 26,676 European ancestry cases, up to 132,532 European ancestry controls	up to 12,543 European ancestry cases, up to 66,458 European ancestry controls	4q28.2	NR	rs4975241-C	0.0607	5E-7		1.14	[1.08-1.19]	Affymetrix, Illumina [at least 11579618] (imputed)	N
1573	chr4	129559798	129559799	rs1216352	24847101	Rudkowska I	2014-05-19	J Lipid Res	Genome-wide association study of the plasma triglyceride response to an n-3 polyunsaturated fatty acid supplementation.	Response to long-chain n-3 polyunsaturated fatty acid supplementation (change in triglyceride levels)	81 responder individuals, 60 non-responder individuals	NA	4q28.2	PHF17	rs1216352-A	0.23	1E-6		3.49		Illumina [2668805]	N
1573	chr4	129587306	129587307	rs58404727	31577861	Dai J	2019-10-31	Int J Cancer	Genome-wide association study of INDELs identified four novel susceptibility loci associated with lung cancer risk.	Lung cancer	20,871 European ancestry cases, 15,971 European ancestry controls, 2,331 Chinese ancestry cases, 3,077 Chinese ancestry controls	NA	4q28.2	RP11, 184M15.2	rs58404727-D	0.02	5E-7		1.19	[1.11-1.28]	Illumina [484196]	N
1573	chr4	129608287	129608288	rs72681619	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	4q28.2		rs72681619-G	NR	5E-8		0.0183	[0.012-0.025] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1573	chr4	129621565	129621566	rs72681628	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	4q28.2		rs72681628-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1574	chr4	129696220	129696221	rs1974942	23400010	Del-Aguila JL	2013-02-12	Pharmacogenomics J	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NA	4q28.2	PHF17	rs1974942-A	0.1	4E-6	(EA-glucose response)	5.29	[3.04-7.54] mg/dL decrease	Affymetrix, Illumina [> 2000000] (imputed)	N
1574	chr4	129740589	129740590	rs17346077	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	4q28.2	Intergenic	rs17346077-A	0.9176	2E-14	(MTAG)	0.0248	[0.018-0.031] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1574	chr4	129740589	129740590	rs17346077	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	4q28.2	Intergenic	rs17346077-A	0.9176	4E-13		0.0257	[0.019-0.033] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1574	chr4	129740589	129740590	rs17346077	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	4q28.2	Intergenic	rs17346077-A	0.9171	2E-14	(MTAG)	0.0229	[0.017-0.029] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1575	chr4	129805155	129805156	rs17348586	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	4q28.2	Intergenic	rs17348586-A	0.9129	1E-8	(MTAG)	0.0133	[0.0088-0.0178] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1575	chr4	129808205	129808206	rs318504	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	4q28.2	NR	rs318504-A	0.41	1E-6	(IFNalpha_CXCL10_of_Monocytes)			Illumina [5084123] (imputed)	N
1575	chr4	129890789	129890790	rs7655841	24621683	Cho MH	2014-02-07	Lancet Respir Med	Risk loci for chronic obstructive pulmonary disease: a genome-wide association study and meta-analysis.	Chronic obstructive pulmonary disease (moderate to severe)	5,812 European ancestry cases, 3,955 European ancestry controls, 821 African American cases, 1,749 African American controls	2,651 cases and their relatives	4q28.2	SCLT1	rs7655841-?	NR	7E-7	(AA)			Illumina [up to 701491] (imputed)	N
1577	chr4	130029205	130029206	rs10518544	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	4q28.2	C4orf33	rs10518544-T	0.0972	4E-10		0.024941336	[0.017-0.033] unit increase	Affymetrix [11515109] (imputed)	N
1577	chr4	130034927	130034927	rs10701163	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	4q28.2	C4orf33, Mir 340	rs10701163-G	0.433798	7E-22	(N-acetylglucosamine/N-acetylgalactosamine)	0.217	[0.17-0.26] unit increase	Illumina [13039987] (imputed)	N
1577	chr4	130036434	130036435	rs11728985	29559929	Amare AT	2018-03-06	Front Psychiatry	Association of the Polygenic Scores for Personality Traits and Response to Selective Serotonin Reuptake Inhibitors in Patients with Major Depressive Disorder.	Remission after SSRI treatment in MDD or openness	865 individuals with SSRI response data, 260,861 individuals with personality trait data	NA	4q28.2	C4orf33	rs11728985-T	NR	4E-7				NR [NR] (imputed)	N
1577	chr4	130039883	130039884	rs530686	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	4q28.2	C4orf33	rs530686-A	0.39	6E-18	(N-acetylglucosamine/N-acetylgalactosamine)	0.095	[0.073-0.117] unit increase	Illumina [7750367] (imputed)	N
1577	chr4	130136922	130136923	rs79088961	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	4q28.2	Intergenic	rs79088961-C	0.9141	8E-10		0.0248	[0.017-0.033] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1577	chr4	130153689	130153690	rs13129839	33223526	Hong S	2020-11-22	Transl Psychiatry	Genome-wide association study of Alzheimer's disease CSF biomarkers in the EMIF-AD Multimodal Biomarker Discovery dataset.	Central cerebrospinal fluid amyloid beta 42 to 40 ratio	677 European ancestry individuals	NA	4q28.2		rs13129839-A	0.698	9E-6		0.043	[0.023-0.063] unit decrease	Illumina [7778465] (imputed)	N
1578	chr4	130161348	130161349	rs7677291	32438682	Mateos MK	2020-05-19	Cancers (Basel)	Genome-Wide Association Meta-Analysis of Single-Nucleotide Polymorphisms and Symptomatic Venous Thromboembolism during Therapy for Acute Lymphoblastic Leukemia and Lymphoma in Caucasian Children.	Childhood ALL/LBL (acute lymphoblastic leukemia/lymphoblastic lymphoma) treatment-related venous thromboembolism	92 European ancestry cases, 1,481 European ancestry controls	NA	4q28.2	NR	rs7677291-?		4E-6		2.11	[1.53-2.9]	Illumina [NR] (imputed)	N
1578	chr4	130176010	130176011	rs7659117	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Rostral anterior cingulate cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	4q28.2	NR	rs7659117-?		9E-6				Illumina [4322238] (imputed)	N
1578	chr4	130178329	130178330	rs12512163	32963334	Wei XT	2020-09-22	Eur J Hum Genet	Pleiotropic genomic variants at 17q21.31 associated with bone mineral density and body fat mass: a bivariate genome-wide association analysis.	Hip bone mineral density and total body fat mass (bivariate analysis)	10,070 European ancestry individuals, 1,623 Han Chinese ancestry individuals, 843 African American individuals, 445 Hispanic individuals	NA	4q28.2	C4orf33	rs12512163-?		6E-9				Affymetrix, Illumina [2374420] (imputed)	N
1578	chr4	130178329	130178330	rs12512163	32314116	Zhang H	2020-04-20	Osteoporos Int	Pleiotropic loci underlying bone mineral density and bone size identified by a bivariate genome-wide association analysis.	Hip bone size	3,267 European ancestry individuals, 1,619 Chinese ancestry individuals, 843 African American individuals, 446 Hispanic individuals	NA	4q28.2	NR	rs12512163-G	NR	7E-9		0.12	[0.081-0.159] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1578	chr4	130178329	130178330	rs12512163	32314116	Zhang H	2020-04-20	Osteoporos Int	Pleiotropic loci underlying bone mineral density and bone size identified by a bivariate genome-wide association analysis.	Bone mineral density (hip) and hip bone size	3,267 European ancestry individuals, 1,619 Chinese ancestry individuals, 843 African American individuals, 446 Hispanic individuals	NA	4q28.2	NR	rs12512163-G	NR	5E-9				Affymetrix, Illumina [NR] (imputed)	N
1578	chr4	130236227	130236228	rs10009321	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Neurofibrillary tangles	up to 4,707 individuals	NA	4q28.2	intergenic	rs10009321-G	0.796	4E-6	(Ordinal I)	0.2186	[0.13-0.31] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1578	chr4	130236770	130236771	rs4975209	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Neurofibrillary tangles	up to 4,707 individuals	NA	4q28.2	intergenic	rs4975209-C	0.7774	1E-6	(Ordinal I)	0.2237	[0.13-0.31] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1578	chr4	130246679	130246680	rs11943511	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	4q28.2	NR	rs11943511-?	NR	2E-16				Affymetrix [NR]	N
1578	chr4	130258335	130258336	rs112637405	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	4q28.2	C4orf33	rs112637405-T	0.0	4E-8		1.94618	[1.25-2.64] unit increase	Illumina [13520550] (imputed)	N
1578	chr4	130265382	130265383	rs5861895	28654678	Mandage R	2017-06-27	PLoS One	Genetic factors affecting EBV copy number in lymphoblastoid cell lines derived from the 1000 Genome Project samples.	Epstein-Barr virus copy number in lymphoblastoid cell lines	389 East Asian ancestry individuals, 189 South Asian ancestry individuals, 492 European ancestry individuals, 467 Sub-Saharan African ancestry individuals, 59 African American individuals, 157 Hispanic/Latino individuals	NA	4q28.2	C4orf33, LOC101927282	rs5861895-?	NR	1E-6	(East and South Asian)			NR [at least 880000]	N
1578	chr4	130266044	130266045	rs56255423	32890573	Yan Q	2020-09-02	J Allergy Clin Immunol	A genome-wide association study of asthma hospitalizations in adults.	Exacerbations requiring hospitalisation in asthma	1,658 British ancestry cases, 32,509 British ancestry controls	NA	4q28.2	NR	rs56255423-A	0.98	2E-6		1.64	[NR]	Affymetrix [87696888] (imputed)	N
1578	chr4	130279734	130279735	rs56131981	31497858	Dumitrescu L	2019-09-01	Brain	Sex differences in the genetic predictors of Alzheimer's pathology.	Neurofibrillary tangles	3,275 European ancestry women	NA	4q28.2	C4orf33, LINC02466	rs56131981-A	0.124657	3E-6		0.474647	[0.28-0.67] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1579	chr4	130286501	130286501	rs71589039	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	4q28.2	NR	rs71589039-?		8E-9		0.0127191	[0.0084-0.017] unit increase	Affymetrix [19400418] (imputed)	N
1579	chr4	130300614	130300615	rs4554091	31806883	de Las Fuentes L	2019-12-06	Pharmacogenomics J	Genome-wide meta-analysis of variant-by-diuretic interactions as modulators of lipid traits in persons of European and African ancestry.	Triglyceride levels x loop diuretics use interaction	2,117 European ancestry exposed individuals, 30,715 European ancestry unexposed individuals, 784 African American and African ancestry exposed individuals, 5,218 African American and African ancestry unexposed individuals	NA	4q28.2	SCLT1, LOC105377417	rs4554091-?	NR	6E-8	(African)	0.0137	[0.013-0.015] mmol/L increase	Affymetrix, Illumina [NR] (imputed)	N
1579	chr4	130338058	130338059	rs1433375	29082582	Almli LM	2017-10-30	Addict Biol	Problematic alcohol use associates with sodium channel and clathrin linker 1 (SCLT1) in trauma-exposed populations.	Problematic alcohol use in trauma-exposed individuals	1,036 African American individuals	828 European ancestry individuals, 108 African ancestry individuals, 282 Hispanic and Native American individuals, 170 other ancestry individuals, 6 Asian individuals	4q28.2	SCLT1	rs1433375-A	0.17	3E-8	(AA, initial)	2.69	[1.75-3.63] unit increase	Illumina [501278]	N
1579	chr4	130340879	130340880	rs17014760	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Cerebral amyloid angiopathy	1,673 cases, 1,134 controls	NA	4q28.2	intergenic	rs17014760-A	0.2465	7E-6		0.3262	[0.18-0.47] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1579	chr4	130400774	130400775	rs186822321	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q28.2	Intergenic	rs186822321-A	0.999	2E-6	(AA)	0.424	unit increase	Illumina [NR] (imputed)	N
1579	chr4	130405732	130405733	rs615551	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	4q28.2		rs615551-C	0.179	1E-9		0.009	[0.007-0.011] unit decrease	NR [NR] (imputed)	N
1580	chr4	130513870	130513871	rs547475396	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Insomnia	389 East Asian ancestry cases, 177,864 East Asian ancestry controls	NA	4q28.2		rs547475396-C	0.001275903	2E-8		9.221178	[5.99-12.45] unit increase	Illumina [13429894] (imputed)	N
1580	chr4	130513870	130513871	rs547475396	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Insomnia	1,402 European ancestry cases, 485,225 European ancestry controls, 389 East Asian ancestry cases, 177,864 East Asian ancestry controls	NA	4q28.2		rs547475396-C	NR	2E-8		9.2212	[5.99-12.45] unit increase	Affymetrix, Illumina [25845016] (imputed)	N
1581	chr4	130670107	130670108	rs10006235	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	4q28.2		rs10006235-T	0.2873	4E-7		35.140823	z score increase	NR [6814003]	N
1581	chr4	130670107	130670108	rs10006235	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	4q28.2	RP11-519M16.1	rs10006235-?	NR	3E-11		0.015006348	[0.011-0.019] unit decrease	NR [7306098]	N
1581	chr4	130670107	130670108	rs10006235	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	4q28.2		rs10006235-T	0.2689	4E-9		0.0093	[0.0062-0.0124] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1581	chr4	130670107	130670108	rs10006235	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	4q28.2	Intergenic	rs10006235-T	0.2689	1E-8	(MTAG)	0.0084	[0.0055-0.0113] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1582	chr4	130724739	130724740	rs4398538	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	4q28.2		rs4398538-?	NR	7E-13				NR [~ 8900000] (imputed)	N
1582	chr4	130726832	130726833	rs2391540	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	4q28.2	NR	rs2391540-?	NR	4E-12				Affymetrix [~ 8270000] (imputed)	N
1582	chr4	130726832	130726833	rs2391540	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	4q28.2	NA	rs2391540-A	0.6718	1E-14		0.0139	[0.01-0.017] unit decrease	NR [~ 27400000] (imputed)	N
1582	chr4	130731071	130731072	rs2391504	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	4q28.2		rs2391504-?	NR	7E-8				NR [~ 8900000] (imputed)	N
1582	chr4	130731283	130731284	rs4864201	22484627	Bradfield JP	2012-04-08	Nat Genet	A genome-wide association meta-analysis identifies new childhood  obesity loci.	Obesity	5,530 European ancestry cases, 8,318 European ancestry controls	2,214 European ancestry cases, 2,674 European ancestry controls	4q28.2	BC041448	rs4864201-?	NR	2E-7		1.124	[1.076-1.175]	Affymetrix, Illumina [2700000] (imputed)	N
1582	chr4	130734389	130734390	rs537230984	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	4q28.2	NR	rs537230984-?	NR	7E-6		4.507	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1582	chr4	130740403	130740404	rs2968973	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	4q28.2	C4orf33	rs2968973-C	0.357105	1E-11		0.00992715	[0.0071-0.0128] unit increase	Affymetrix [12370749]	N
1582	chr4	130759646	130759647	rs2952863	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	4q28.2		rs2952863-G	NR	2E-12		0.0124	[0.0089-0.0159] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1582	chr4	130759646	130759647	rs2952863	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	4q28.2		rs2952863-G	NR	1E-11		0.0137	[0.0098-0.0176] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1582	chr4	130759646	130759647	rs2952863	33045005	Vogelezang S	2020-10-12	PLoS Genet	Novel loci for childhood body mass index and shared heritability with adult cardiometabolic traits.	Childhood body mass index	39,620 European ancestry individuals	NA	4q28.2	C4orf33	rs2952863-T	0.30	3E-6		0.04	[0.022-0.058] unit increase	Affymetrix, Illumina [8227808] (imputed)	N
1582	chr4	130759646	130759647	rs2952863	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		4q28.2	C4orf33	rs2952863-T	0.291024	2E-10		0.00963412	[0.0067-0.0126] unit increase	Affymetrix [12370749]	N
1582	chr4	130764604	130764605	rs2860199	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	4q28.2	NA	rs2860199-T	0.7136	2E-14		0.0142	[0.01-0.018] unit decrease	NR [~ 27400000] (imputed)	N
1582	chr4	130786345	130786346	rs2952858	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	4q28.2	NR	rs2952858-G	0.5987	1E-8		0.0237	[0.016-0.032] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1582	chr4	130805103	130805104	rs11933222	31513605	Jeon S	2019-09-12	PLoS One	Structural equation modeling for hypertension and type 2 diabetes based on multiple SNPs and multiple phenotypes.	Waist circumference	8,842 Korean ancestry individuals	NA	4q28.2	NR	rs11933222-?		9E-6				NR [327872]	N
1582	chr4	130806985	130806986	rs116669916	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Trunk fat mass	3,399 whole genome sequenced individuals, 12,838 European ancestry individuals	10,667 European ancestry individuals	4q28.2	RP11-422J15.1	rs116669916-T	0.995	3E-6		0.5288	[0.31-0.75] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1583	chr4	130817059	130817060	rs2391518	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	4q28.2	C4orf33	rs2391518-T	0.32	1E-6		0.015	[0.009-0.0216] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1583	chr4	130817059	130817060	rs2391518	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	4q28.2	C4orf33	rs2391518-T	0.307	1E-6	(EA)	0.016	[0.0096-0.0226] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1583	chr4	130817059	130817060	rs2391518	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	4q28.2	C4orf33	rs2391518-T	0.306	3E-7	(EA, men)	0.022	[0.014-0.031] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1583	chr4	130903510	130903511	rs17455138	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	4q28.2	C4orf33	rs17455138-T	0.7655	1E-10		1.0311761		Affymetrix [11880941] (imputed)	N
1584	chr4	131013139	131013140	rs11933661	24277619	Quillen EE	2013-11-26	Am J Med Genet B Neuropsychiatr Genet	ALDH2 is associated to alcohol dependence and is the major genetic determinant of "daily maximum drinks" in a GWAS study of an isolated rural Chinese sample.	Alcohol dependence	102 Han Chinese ancestry cases, 212 Han Chinese ancestry controls	NA	4q28.2	intergenic	rs11933661-?		4E-6		0.538	unit decrease	Illumina [247725]	N
1584	chr4	131023283	131023284	rs869090	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	4q28.3		rs869090-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1584	chr4	131026487	131026488	rs114646238	23319000	Luykx JJ	2013-01-15	Mol Psychiatry	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA/MHPG ratio)	up to 398 European ancestry individuals	NA	4q28.3	intergenic	rs114646238-C		9E-6		0.2801	unit increase	Illumina [5767231] (imputed)	N
1584	chr4	131064689	131064690	rs10011007	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	4q28.3	NR	rs10011007-?	NR	1E-6		4.851	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1585	chr4	131105071	131105072	rs1602815	31533690	Orlova E	2019-09-18	BMC Oral Health	Pilot GWAS of caries in African-Americans shows genetic heterogeneity.	Dental caries (decayed and filled deciduous tooth surfaces)	96 African American children	NA	4q28.3	NR	rs1602815-?		2E-6		7.756	[5.11-10.4] unit increase	Illumina [~ 4900000] (imputed)	N
1585	chr4	131132531	131132532	rs17050901	32355309	Cha PC	2020-05-01	J Hum Genet	Genome-wide association study identifies zonisamide responsive gene in Parkinson's disease patients.	Levodopa wearing off effect (motor symptom score change) in Parkinson's disease (response to zonisamide)	67 Japanese ancestry responders, 133 Japanese ancestry poor responders	NA	4q28.3	LOC102724353, PGBD4P4	rs17050901-G	0.16	6E-6		8.17		Illumina [611492]	N
1585	chr4	131137760	131137761	rs1024020	20031603	Marroni F	2009-08-01	Circ Cardiovasc Genet	A genome-wide association scan of RR and QT interval duration in 3 European genetically isolated populations: the EUROSPAN project.	RR interval (heart rate)	2,325 European ancestry individuals	NA	4q28.3	intergenic	rs1024020-A	0.21	4E-7		0.18	[0.10-0.26] unit increase	Illumina [~ 318327]	N
1585	chr4	131153169	131153170	rs6818069	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	4q28.3	NR	rs6818069-G	0.2526	4E-7		0.0069	[0.0042-0.0096] unit increase	NR [7666894] (imputed)	N
1586	chr4	131209886	131209887	rs12512642	32959083	Adewuyi EO	2020-09-21	Hum Genet	Genetic analysis of endometriosis and depression identifies shared loci and implicates causal links with gastric mucosa abnormality.	Endometriosis or depression (pleiotropy)	17,054 endometriosis cases, 170,756 European ancestry depression cases, 191,858 controls, 329,443 European ancestry controls	NA	4q28.3	NR	rs12512642-T		5E-8		0.0274113	[0.018-0.037] unit increase	NR [6694342]	N
1586	chr4	131237380	131237381	rs35553410	30718901	Howard DM	2019-02-04	Nat Neurosci	Genome-wide meta-analysis of depression identifies 102 independent variants and highlights the importance of the prefrontal brain regions.	Depression	118,811 European ancestry cases, 327,427 European ancestry controls, 127,552 cases, 233,763 controls	414,055 European ancestry cases, 892,299 European ancestry controls	4q28.3	NR	rs35553410-C	0.2538	2E-10		1.0162601	[1.01-1.02]	NR [8098588] (imputed)	N
1586	chr4	131286029	131286030	rs4864429	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	4q28.3	Intergenic	rs4864429-T	0.3695	5E-8	(MTAG)	0.0093	[0.006-0.0126] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1586	chr4	131320242	131320243	rs34464266	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Initial pursuit acceleration	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	4q28.3	LOC101927282	rs34464266-A	0.08966	5E-6	(African)			Illumina [4404269] (imputed)	N
1586	chr4	131322431	131322432	rs4863988	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	4q28.3	Intergenic	rs4863988-A	0.6127	4E-8	(MTAG)	0.0075	[0.0048-0.0102] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1587	chr4	131381116	131381117	rs7665833	30468137	Fabbri C	2018-11-23	Br J Psychiatry	Genome-wide association study of treatment-resistance in depression and meta-analysis of three independent samples.	Treatment resistant depression	1,378 European ancestry treatment resistant cases, 934 European ancestry responders to first treatment, 914 European ancestry non-responders to first treatment	NA	4q28.3	PGBD4P4	rs7665833-A	0.14	1E-7		2.03	[1.78-2.28]	Affymetrix, Illumina [7000000] (imputed)	N
1587	chr4	131418081	131418082	rs4863995	30468137	Fabbri C	2018-11-23	Br J Psychiatry	Genome-wide association study of treatment-resistance in depression and meta-analysis of three independent samples.	Treatment resistant depression	1,378 European ancestry treatment resistant cases, 934 European ancestry responders to first treatment, 914 European ancestry non-responders to first treatment	NA	4q28.3	PGBD4P4	rs4863995-T	0.22	4E-6		1.67	[1.45-1.89]	Affymetrix, Illumina [7000000] (imputed)	N
1587	chr4	131436786	131436787	rs6852702	30468137	Fabbri C	2018-11-23	Br J Psychiatry	Genome-wide association study of treatment-resistance in depression and meta-analysis of three independent samples.	Treatment resistant depression	1,378 European ancestry treatment resistant cases, 934 European ancestry responders to first treatment, 914 European ancestry non-responders to first treatment	NA	4q28.3	GAPDHP56	rs6852702-A	0.09	4E-6		2.07	[1.76-2.38]	Affymetrix, Illumina [7000000] (imputed)	N
1588	chr4	131468685	131468686	rs13105686	31626034	Thomsen H	2019-10-11	Melanoma Res	Genome-wide study on uveal melanoma patients finds association to DNA repair gene TDP1.	Uveal melanoma with epithelioid cells	285 European ancestry cases, 5,199 European ancestry controls	NA	4q28.3		rs13105686-C	0.17	2E-6		1.63		Illumina [10258281] (imputed)	N
1588	chr4	131499568	131499569	rs17421787	27723756	Wang J	2016-10-10	Nat Genet	Genome-wide association analysis identifies variation in vitamin D receptor and other host factors influencing the gut microbiota.	Gut microbiota (bacterial taxa)	1,812 European ancestry individuals	NA	4q28.3	RP11-422J15.1	rs17421787-C	NR	4E-8	(Erysipelotrichia class)	0.3	unit decrease	Affymetrix, Illumina [6344846] (imputed)	N
1588	chr4	131499568	131499569	rs17421787	27723756	Wang J	2016-10-10	Nat Genet	Genome-wide association analysis identifies variation in vitamin D receptor and other host factors influencing the gut microbiota.	Gut microbiota (bacterial taxa)	1,812 European ancestry individuals	NA	4q28.3	RP11-422J15.1	rs17421787-C	NR	4E-8	(Erysipelotrichales order)	0.3	unit decrease	Affymetrix, Illumina [6344846] (imputed)	N
1588	chr4	131499568	131499569	rs17421787	27723756	Wang J	2016-10-10	Nat Genet	Genome-wide association analysis identifies variation in vitamin D receptor and other host factors influencing the gut microbiota.	Gut microbiota (bacterial taxa)	1,812 European ancestry individuals	NA	4q28.3	RP11-422J15.1	rs17421787-C	NR	4E-8	(Erysipelotrichaceae family)	0.3	unit decrease	Affymetrix, Illumina [6344846] (imputed)	N
1588	chr4	131531359	131531360	rs13140180	29187748	Morey RA	2017-11-30	Transl Psychiatry	Genome-wide association study of subcortical brain volume in PTSD cases and trauma-exposed controls.	Nucleus accumbens volume in trauma-exposed individuals	36 African American post-traumatic stress disorder cases, 38 African American trauma-exposed controls, 30 European ancestry post-traumatic stress disorder cases, 53 European ancestry trauma-exposed controls	NA	4q28.3	intergenic	rs13140180-?	NR	3E-7	(right hemisphere)			Illumina [2711511] (imputed)	N
1589	chr4	131656693	131656694	rs306356	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Intake of total sugars	174,424 European ancestry individuals	NA	4q28.3	RP11-401I19.2	rs306356-A	0.05	4E-6		1.78	[1.02-2.54] g/day increase	Affymetrix [10353649] (imputed)	N
1589	chr4	131695430	131695431	rs3113500	30845926	van der Plaat DA	2019-03-07	BMC Pulm Med	Limited overlap in significant hits between genome-wide association studies on two airflow obstruction definitions in the same population.	Airway obstruction (FEV1/FVC<70%) in never smokers	77 European ancestry cases, 355 European ancestry controls	NA	4q28.3		rs3113500-A	NR	3E-6		2.747	[2.32-3.17]	Illumina [242926]	N
1590	chr4	131790500	131790501	rs1478091	19010793	Baranzini SE	2008-11-14	Hum Mol Genet	Genome-wide association analysis of susceptibility and clinical phenotype in multiple sclerosis.	Multiple sclerosis (severity)	794 European ancestry cases, 883 European ancestry controls	NA	4q28.3	LOC132321	rs1478091-?	0.06	2E-6			[NR]	Illumina [551642]	N
1590	chr4	131795548	131795549	rs78594020	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	4q28.3	Intergenic	rs78594020-T	NR	3E-6		2.05499	[1.19-2.92] unit increase	Illumina [13520550] (imputed)	N
1590	chr4	131798602	131798603	rs17051103	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	4q28.3	NR	rs17051103-?	NR	1E-6				Affymetrix [NR]	N
1590	chr4	131800498	131800499	rs111245719	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q28.3	NR	rs111245719-T	0.0122	2E-8	(HBD)	4.091	NR unit increase	Illumina [1671387] (imputed)	N
1590	chr4	131841777	131841778	rs115133062	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Lean body mass	3,399 whole genome sequenced individuals, 11,801 European ancestry individuals	10,676 European ancestry individuals	4q28.3	RP11-401I19.1	rs115133062-T	0.0073	4E-6		0.3808	[0.22-0.54] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1590	chr4	131847993	131847994	rs2312403	33495597	Harper AR	2021-01-25	Nat Genet	Common genetic variants and modifiable risk factors underpin hypertrophic cardiomyopathy susceptibility and expressivity.	Hypertrophic cardiomyopathy (sarcomere positive)	54 African ancestry cases, 28 Hispanic/Latino cases, 18 East Asian ancestry cases, 728 European ancestry cases, 43 South Asian ancestry cases, 593 African ancestry controls, 92 Hispanic/Latino controls, 121 East Asian ancestry controls, 18,791 European ancestry controls, 595 South Asian ancestry controls	NA	4q28.3	AC093831.1	rs2312403-C	0.4384	6E-7		0.2819	[0.17-0.39] unit decrease	Affymetrix [8590397] (imputed)	N
1591	chr4	131919701	131919702	rs1846786	30552317	Guo W	2018-12-14	Transl Psychiatry	Exploratory genome-wide association analysis of response to ketamine and a polygenic analysis of response to scopolamine in depression.	Response to ketamine in bipolar disorder or major depression (antidepressant effects)	157 European ancestry individuals	NA	4q28.3	Intergenic	rs1846786-T	0.6951	6E-6		19.0893	[11.14-27.04] unit decrease	Illumina [~ 6000000] (imputed)	N
1591	chr4	131939528	131939529	rs12642294	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	4q28.3	SCLT1	rs12642294-?	NR	6E-6	(TAG 52:4)	0.15923768	[0.09-0.228] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1591	chr4	131982698	131982699	rs183646930	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q28.3	NR	rs183646930-C	0.01045	6E-10	(HBD)	4.723	NR unit increase	Illumina [1671387] (imputed)	N
1591	chr4	131982698	131982699	rs183646930	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q28.3	NR	rs183646930-C	0.01045	2E-8	(ECI2)	6.616	NR unit increase	Illumina [1671387] (imputed)	N
1591	chr4	131982698	131982699	rs183646930	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q28.3	NR	rs183646930-C	0.01045	1E-11	(PRDX2)	1.474	NR unit increase	Illumina [1671387] (imputed)	N
1592	chr4	132061769	132061770	rs185438855	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q28.3	Intergenic	rs185438855-G	0.999	2E-6	(AA)	0.372	unit increase	Illumina [NR] (imputed)	N
1592	chr4	132095278	132095279	rs7696446	28203683	Heit JA	2017-02-16	Thromb Haemost	Identification of unique venous thromboembolism-susceptibility variants in African-Americans.	Venous thromboembolism adjusted for sickle cell variant rs77121243-T	393 African American cases, 4,941 African American controls.	NR	4q28.3	GAPDHP56	rs7696446-G	0.2126	9E-7		1.613	[1.333-1.952]	Affymetrix, Illumina [14074516] (imputed)	N
1595	chr4	132512117	132512118	rs9991917	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	4q28.3	intergenic	rs9991917-A	0.19	1E-8		1.0463107		Affymetrix [11880941] (imputed)	N
1595	chr4	132512758	132512759	rs72943262	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q28.3	NR	rs72943262-T	0.01742	1E-8	(RAC2)	0.01246	NR unit increase	Illumina [1671387] (imputed)	N
1596	chr4	132570990	132570991	rs13121139	31586183	Niazi Y	2019-10-04	Mutagenesis	Distinct pathways associated with chromosomal aberration frequency in a cohort exposed to genotoxic compounds compared to general population.	Chromosomal aberration frequency (chromosome type)	866 European and unknown ancestry individuals	NA	4q28.3	NR	rs13121139-?	NR	8E-6		0.1	[0.06-0.15] unit increase	Illumina [> 2600000] (imputed)	N
1596	chr4	132570990	132570991	rs13121139	31586183	Niazi Y	2019-10-04	Mutagenesis	Distinct pathways associated with chromosomal aberration frequency in a cohort exposed to genotoxic compounds compared to general population.	Chromosomal aberration frequency (chromosome type)	607 European and unknown ancestry genotoxic compound-exposed individuals, 866 European and unknown ancestry unexposed individuals	NA	4q28.3	NR	rs13121139-?	NR	4E-6		0.09	[NR] unit increase	Illumina [> 2600000] (imputed)	N
1597	chr4	132650595	132650596	rs28896784	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income	286,301 British ancestry individuals	NA	4q28.3	RN7SL205P	rs28896784-G	NR	4E-8		0.011228	[0.0072-0.0152] unit increase	Affymetrix [18485882] (imputed)	N
1597	chr4	132669749	132669750	rs146776041	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial lung cancer	1,993 European ancestry cases, 33,960 European ancestry controls	NA	4q28.3	NR	rs146776041-G	0.014	8E-6		3.15	[1.90-5.23]	Illumina [9327222] (imputed)	N
1597	chr4	132752137	132752138	rs144512680	31504550	Bradfield JP	2019-07-05	Hum Mol Genet	A Trans-ancestral Meta-Analysis of Genome-Wide Association Studies Reveals Loci Associated with Childhood Obesity.	Childhood obesity	8,613 European ancestry cases, 3,213 African American cases, 69 Moroccan ancestry cases, 986 Hispanic/Latino cases, 124 East Asian ancestry cases, 12,696 European ancestry controls, 1,392 African American controls, 64 Moroccan ancestry controls, 993 Hispanic/Latino controls, 454 East Asian ancestry controls	NA	4q28.3	NR	rs144512680-C	NR	3E-6	(African)	0.6121	[0.35-0.87] unit increase	Affymetrix, Illumina [up to 15123508] (imputed)	N
1597	chr4	132764480	132764481	rs17464835	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	4q28.3		rs17464835-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1599	chr4	133022908	133022909	rs4279230	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	4q28.3	Intergenic	rs4279230-A	0.6547	1E-8		0.0117	[0.0076-0.0158] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1601	chr4	133207822	133207823	rs183877493	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q28.3	NR	rs183877493-A	0.0122	7E-9	(AKR1B10)	2.152	NR unit increase	Illumina [1671387] (imputed)	N
1601	chr4	133207822	133207823	rs183877493	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q28.3	NR	rs183877493-A	0.0122	6E-10	(AKR1C3)	0.5762	NR unit increase	Illumina [1671387] (imputed)	N
1601	chr4	133240008	133240009	rs1021694	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q28.3	NR	rs1021694-A	0.0122	7E-9	(EPHX1)	5.025	NR unit increase	Illumina [1671387] (imputed)	N
1601	chr4	133240008	133240009	rs1021694	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q28.3	NR	rs1021694-A	0.0122	1E-8	(UGT2B15)	0.4037	NR unit increase	Illumina [1671387] (imputed)	N
1601	chr4	133265929	133265930	rs116442755	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Neuroticism	170,911 European ancestry individuals	NA	4q28.3	NR	rs116442755-T	0.191	4E-6		0.02010576	[0.012-0.029] unit decrease	Affymetrix [up to 6544775] (imputed)	N
1601	chr4	133288770	133288771	rs2173534	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	4q28.3	NR	rs2173534-A	0.275689942339286	4E-8		0.009143689	[0.0059-0.0124] unit decrease	NR [NR]	N
1602	chr4	133326394	133326395	rs7690467	22911880	Boraska V	2012-08-22	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association analysis of eating disorder-related symptoms, behaviors, and personality traits.	Eating disorders	Up to 2,567 European ancestry individuals	Up to 767 European ancestry cases, up to 486  European ancestry controls	4q28.3	intergenic	rs7690467-T	0.715	7E-6	(OCPD)	1.12	[1.07-1.18]	Illumina [283744]	N
1602	chr4	133349982	133349983	rs36098945	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	4q28.3	Intergenic	rs36098945-?	NR	4E-6		2.2665458	[NR]	Affymetrix [492217] (imputed)	N
1602	chr4	133413547	133413548	rs34517207	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	4q28.3	NR	rs34517207-C	0.314972969294605	2E-9		0.0059104767	[0.004-0.0078] unit decrease	NR [NR]	N
1602	chr4	133419275	133419276	rs13148313	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Anxiety	at least 23,606 European ancestry cases, at least 113,351 European ancestry controls	624,615 European ancestry cases, 1,310,854 European ancestry controls	4q28.3	RP11, 62N21.1	rs13148313-T	0.2903	2E-7		0.012647331	[0.0072-0.0181] unit increase	NR [9417325] (imputed)	N
1602	chr4	133429180	133429181	rs79956920	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q28.3	NR	rs79956920-T	0.0122	3E-9	(TPM4)	0.1332	NR unit increase	Illumina [1671387] (imputed)	N
1603	chr4	133486855	133486856	rs1991976	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	4q28.3	NR	rs1991976-?	NR	4E-18				Affymetrix [NR]	N
1603	chr4	133487355	133487356	rs4863875	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	4q28.3	NR	rs4863875-?	NR	2E-9				Affymetrix [NR]	N
1603	chr4	133551834	133551835	rs59706856	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Vascular endothelial growth factor levels	7,118 Finnish ancestry individuals	NA	4q28.3	NR	rs59706856-C		5E-6		0.2228	[0.13-0.32] SD units increase	NR [10700000] (imputed)	N
1605	chr4	133740380	133740381	rs151170584	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	4q28.3	NR	rs151170584-T	0.0362	9E-6	(EA)	0.0989	[0.055-0.143] unit increase	Illumina [~ 11800000] (imputed)	N
1605	chr4	133753667	133753668	rs34397315	32580138	Shi XY	2020-06-21	EBioMedicine	Identification of susceptibility variants to benign childhood epilepsy with centro-temporal spikes (BECTS) in Chinese Han population.	Benign childhood epilepsy with centro-temporal spikes	1,738 Han Chinese ancestry cases, 6,592 Han Chinese ancestry controls	NA	4q28.3	LOC646187, PCDH10	rs34397315-?		8E-6		1.2048193	[1.11-1.32]	Illumina [5352724] (imputed)	N
1605	chr4	133764146	133764147	rs1868248	29855537	Hirata T	2018-05-31	Sci Rep	Japanese GWAS identifies variants for bust-size, dysmenorrhea, and menstrual fever that are eQTLs for relevant protein-coding or long non-coding RNAs.	Vaginal discharge (itching)	676 Japanese ancestry female cases, 5,058 Japanese ancestry female controls	669 Japanese ancestry female cases, 4,945 Japanese ancestry female controls	4q28.3	NR	rs1868248-A	0.649818686	5E-6		0.202	[0.12-0.29] unit increase	Affymetrix [536506]	N
1605	chr4	133802756	133802757	rs115202226	33128006	Timmins IR	2020-10-30	Commun Biol	Genome-wide association study of self-reported walking pace suggests beneficial effects of brisk walking on health and survival.	Walking pace	450,967 European ancestry individuals	NA	4q28.3	PCDH10	rs115202226-A	NR	2E-8		0.0489128	[0.032-0.066] unit decrease	Affymetrix [10061374] (imputed)	N
1606	chr4	133842650	133842651	rs17511050	29907492	Nakahara S	2018-06-12	Schizophr Res	Polygenic risk score, genome-wide association, and gene set analyses of cognitive domain deficits in schizophrenia.	Working memory	2 Alaskan native ancestry schizophrenia cases, 18 Asian ancestry schizophrenia cases, 20 African American schizophrenia cases, 1 Native Hawaiian ancestry schizophrenia cases, 86 European ancestry schizophrenia cases, 2 Alaskan native ancestry controls, 10 Asian ancestry controls, 17 African American controls, 1 Native Hawaiian ancestry controls, 106 European ancestry controls	NA	4q28.3	intergenic	rs17511050-T		3E-7		1.4	[NR] unit decrease	Illumina [NR] (imputed)	N
1606	chr4	133905752	133905753	rs79630021	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Word spelling	3,399 European ancestry individuals	NA	4q28.3	Intergenic	rs79630021-C	0.891589167	8E-6		0.24699	[0.14-0.36] unit increase	Illumina [6969139] (imputed)	N
1607	chr4	133961185	133961186	rs370989584	30093612	O'Mara TA	2018-08-09	Nat Commun	Identification of nine new susceptibility loci for endometrial cancer.	Endometrial cancer (Non-endometrioid histology)	1,230 European ancestry cases, 35,447 European ancestry controls	NA	4q28.3	PCDH10	rs370989584-CT	0.01094700000000004	1E-7		2.23	[1.66-2.99]	Affymetrix, Illumina [~ 11700000] (imputed)	N
1607	chr4	134068634	134068635	rs7694118	26169365	Huang KC	2015-07-14	BMC Complement Altern Med	Susceptible gene of stasis-stagnation constitution from genome-wide association study related to cardiovascular disturbance and possible regulated traditional Chinese medicine.	Yu-Zhi constitution type in type 2 diabetes	539 non-aboriginal Taiwanese ancestry low Yu-Zhi score individuals, 408 non-aboriginal Taiwanese ancestry high Yu-Zhi score individuals	NA	4q28.3	PCDH10	rs7694118-C	0.663	6E-6	(Genotype model)	1.3	[0.85-1.99]	Illumina [508761]	N
1609	chr4	134270735	134270736	rs17023324	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	4q28.3	NR	rs17023324-?	NR	7E-6				Affymetrix [NR]	N
1609	chr4	134305128	134305129	rs34793120	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	4q28.3		rs34793120-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1609	chr4	134333439	134333440	rs1908127	31545351	Irvin MR	2019-09-23	Am J Hypertens	Genome wide association study of apparent treatment resistant hypertension in the CHARGE consortium: The CHARGE Pharmacogenetics Working Group.	Resistance to antihypertensive treatment in hypertension	931 European ancestry cases, 228 African American ancestry cases, 5,266 European ancestry controls, 1,817 African American ancestry controls	NA	4q28.3	PCDH10, PABPC4L	rs1908127-A	NR	2E-6		1.28	[1.15-1.41]	Affymetrix, Illumina [NR] (imputed)	N
1610	chr4	134411677	134411678	rs9685484	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Perceived sweetness of sucrose	686 European ancestry twins	NA	4q28.3	AC105252.1	rs9685484-G	0.57	9E-6		0.46	[0.26-0.66] unit increase	Illumina [5833901] (imputed)	N
1611	chr4	134521110	134521111	rs114845336	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 22)	2,187 European ancestry individuals	NA	4q28.3	NR	rs114845336-G	0.007795	4E-6		0.7945	[0.66-0.93] unit increase	Illumina [10677593] (imputed)	N
1611	chr4	134572283	134572284	rs1157684	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	4q28.3	Intergenic	rs1157684-A	0.617	3E-14		0.0153	[0.011-0.019] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1611	chr4	134572979	134572980	rs981033	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	4q28.3	Intergenic	rs981033-T	0.617	1E-14	(MTAG)	0.0142	[0.011-0.018] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1611	chr4	134600411	134600412	rs12507927	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	4q28.3	Intergenic	rs12507927-A	0.5995	3E-11	(MTAG)	0.0112	[0.0079-0.0145] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1612	chr4	134622342	134622343	rs78287639	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	4q28.3	NR	rs78287639-?	NR	2E-8				Illumina [7760689] (imputed)	N
1613	chr4	134759851	134759852	rs146636827	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Alcohol consumption x experiences in childhood (felt loved by family member) interaction	41,648 European ancestry individuals	NA	4q28.3		rs146636827-?	NR	4E-8		1.6265	[1.05-2.21] unit decrease	Affymetrix [NR] (imputed)	N
1613	chr4	134772441	134772442	rs149600208	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	4q28.3		rs149600208-?	NR	4E-11				NR [~ 8900000] (imputed)	N
1613	chr4	134868800	134868801	rs4078304	31681408	Yang XL	2019-10-11	Front Genet	Three Novel Loci for Infant Head Circumference Identified by a Joint Association Analysis.	Birth length (MTAG)	up to 182,902 European ancestry individuals	NA	4q28.3	NR	rs4078304-T	0.177	3E-8		0.0444734	[0.029-0.06] unit decrease	NR [1977400] (imputed)	N
1614	chr4	134883970	134883971	rs4398581	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Alcohol consumption x experiences in childhood (felt loved by family member) interaction	41,648 European ancestry individuals	NA	4q28.3		rs4398581-?	NR	9E-9		1.5315	[1.01-2.05] unit decrease	Affymetrix [NR] (imputed)	N
1614	chr4	134947800	134947801	rs1494978	24023788	Ong BA	2013-09-02	PLoS One	Gene network analysis in a pediatric cohort identifies novel lung function genes.	Lung function (FEV1)	1,015 European ancestry individuals, 541 African American individuals	NA	4q28.3	NR	rs1494978-?		6E-6	(EA)			Illumina [up to 524000]	N
1614	chr4	134958650	134958651	rs142696488	34067580	Kim HR	2021-05-17	Genes (Basel)	A Genome-Wide Association Study for Hypertensive Kidney Disease in Korean Men.	Hypertensive renal disease	310 Korean ancestry male cases, 2,294 Korean ancestry male controls	43 Korean ancestry male cases, 636 Korean ancestry male controls	4q28.3	PABPC4L	rs142696488-C	0.029	6E-7		2.78	[1.86 - 4.14]	Affymetrix [NR] (imputed)	N
1615	chr4	135019689	135019690	rs1494989	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	4q28.3		rs1494989-?	NR	6E-10				NR [~ 8900000] (imputed)	N
1615	chr4	135121182	135121183	rs6830036	32232851	Deguchi H	2020-03-30	Br J Haematol	Novel exomic rare variants associated with venous thrombosis.	Venous thromboembolism	104 European ancestry cases, 211 European ancestry controls	NA	4q28.3	PABPC4L	rs6830036-?	0.0078	9E-6				Illumina [308166]	N
1615	chr4	135121720	135121721	rs116807401	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	4q28.3	PABPC4L	rs116807401-C	0.017555	2E-13		0.076602	[0.056-0.097] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1618	chr4	135426025	135426026	rs4374667	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	4q28.3	NR	rs4374667-T	0.321	4E-9		0.00689227	[0.0046-0.0092] unit increase	NR [9732723] (imputed)	N
1618	chr4	135508086	135508087	rs5862145	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	4q28.3		rs5862145-T	NR	4E-9		0.0222	[0.015-0.03] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1618	chr4	135522739	135522740	rs10026364	21347282	Lettre G	2011-02-10	PLoS Genet	Genome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project.	Hypertension	4,069 African American cases, 3,848 African American controls	1,372 African American cases, 1,482 African American controls	4q28.3	intergenic	rs10026364-T	0.2	4E-6		1.28	[1.15-1.42]	Affymetrix [~ 2740000] (imputed)	N
1619	chr4	135537718	135537719	rs6535028	27515689	Kerns SL	2016-07-20	EBioMedicine	Meta-analysis of Genome Wide Association Studies Identifies Genetic Markers of Late Toxicity Following Radiotherapy for Prostate Cancer.	Response to radiotherapy in prostate cancer (overall toxicity)	1,346 European ancestry individuals	NA	4q28.3	Intergenic	rs6535028-T	0.1	3E-6		0.29	[0.17-0.40] unit increase	NR [~ 38000000] (imputed)	N
1620	chr4	135695806	135695807	rs72711240	26989097	Coleman JR	2016-03-17	Br J Psychiatry	Genome-wide association study of response to cognitive-behavioural therapy in children with anxiety disorders.	Response to cognitive-behavioural therapy in anxiety disorder	Up to 902 European ancestry cases, up to 78 cases	NA	4q28.3	Intergenic	rs72711240-?	0.0269	4E-7	(6-month follow-up)			Illumina [3017604] (imputed)	N
1620	chr4	135707819	135707820	rs13108698	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Diastolic blood pressure change trajectory	5,304 African American individuals	6,500 African American individuals	4q28.3	NR	rs13108698-T	0.8398	2E-7		0.0947	[0.059-0.131] mmHg decrease	Affymetrix, Illumina [NR] (imputed)	N
1620	chr4	135780371	135780372	rs10029269	23144319	Lee Y	2012-11-08	Carcinogenesis	Prognostic implications of genetic variants in advanced non-small cell lung cancer: a genome-wide association study.	Non-small cell lung cancer	348 Korean ancestry cases	NA	4q28.3	intergenic	rs10029269-?	NR	4E-6	(Dominant model)			Affymetrix [271817]	N
1620	chr4	135780419	135780420	rs9995018	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	4q28.3	NR	rs9995018-?	NR	2E-6				Affymetrix [NR]	N
1621	chr4	135807154	135807155	rs11721971	32579418	Maukonen M	2020-06-24	J Biol Rhythms	Genetic Associations of Chronotype in the Finnish General Population.	Evening vs. morning chronotype (sMEQ score)	2,364 Finnish ancestry evening individuals, 5,072 Finnish ancestry morning individuals	NA	4q28.3	intergenic	rs11721971-G	NR	9E-6		1.18662	[1.10028-1.27972]	Illumina [5842835] (imputed)	N
1621	chr4	135826888	135826889	rs80310556	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference	1,254 whole genome sequenced European ancestry individuals, 3,074 whole genome sequenced individuals, 29,716 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 701 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,050 Mylopotamos (founder/genetic isolate) individuals, 883 Pomak (founder/genetic isolate) individuals	205,909 European ancestry individuals	4q28.3	RP11-192C21.2	rs80310556-T	0.0765	8E-6		0.0752	[0.042-0.108] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1621	chr4	135900687	135900688	rs13102973	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Subjective well-being	298,420 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	4q28.3	NR	rs13102973-T	0.3716	3E-6		0.0129	[0.0075-0.0183] unit decrease	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
1621	chr4	135903664	135903668	rs143518554	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	4q28.3	RP11-192C21.1	rs143518554-T	0.0676	3E-6		0.0612	[0.035-0.087] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1622	chr4	135958270	135958271	rs12639760	31164008	Mullins N	2019-06-05	Am J Psychiatry	GWAS of Suicide Attempt in Psychiatric Disorders and Association With Major Depression Polygenic Risk Scores.	Suicide attempts in bipolar disorder	3,264 European ancestry attempters, 5,500 European ancestry nonattempters	NA	4q28.3	NR	rs12639760-A	0.22	9E-6		1.21	1.11-1.31	NR [8807005] (imputed)	N
1623	chr4	136057783	136057784	rs114521768	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q28.3	NR	rs114521768-A	0.01045	6E-9	(HIST1H1C)	0.03389	NR unit increase	Illumina [1671387] (imputed)	N
1624	chr4	136193339	136193340	rs17639207	23754948	Randall JC	2013-06-06	PLoS Genet	Sex-stratified genome-wide association studies including 270,000 individuals show sexual dimorphism in genetic loci for anthropometric traits.	Sexual dimorphism in anthropometric traits	up to 60,586 European ancestry males, up to 73,137 European ancestry females	up to 62,395 European ancestry males, up to 74,657 European ancestry females	4q28.3	PABPC4L	rs17639207-T		8E-6	(WCadjBMI, men)			Affymetrix, Illumina [2846694] (imputed)	N
1625	chr4	136328201	136328202	rs11099341	29317602	Hall LS	2018-01-10	Transl Psychiatry	Genome-wide meta-analyses of stratified depression in Generation Scotland and UK Biobank.	Major depressive disorder	6,997 European ancestry female cases, 16,172 European ancestry female controls, 3,852 European ancestry male cases, 16,034 European ancestry male controls	NA	4q28.3	intergenic	rs11099341-A	NR	7E-6		0.09	[0.051-0.129] unit decrease	Affymetrix, Illumina [7105178] (imputed)	N
1625	chr4	136345955	136345956	rs34119486	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Rubella	12,000 European ancestry cases, 71,597 European ancestry controls	NA	4q28.3	NR	rs34119486-?	NR	4E-6		0.09	[0.052-0.128] unit increase	Illumina [at least 560000] (imputed)	N
1625	chr4	136406154	136406155	rs71602617	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	4q28.3	NR	rs71602617-T	0.216	1E-11		0.00914663	[0.0065-0.0118] unit decrease	NR [9732723] (imputed)	N
1625	chr4	136406154	136406155	rs71602617	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	4q28.3	NR	rs71602617-T	0.216	2E-8		0.017765487	[0.012-0.024] unit decrease	NR [~ 10000000] (imputed)	N
1626	chr4	136477844	136477845	rs74968689	28247064	Deming Y	2017-02-28	Acta Neuropathol	Genome-wide association study identifies four novel loci associated with Alzheimer's endophenotypes and disease modifiers.	Cerebrospinal T-tau levels	3,146 individuals	NA	4q28.3	PABPC4L, LINC00613	rs74968689-G	0.026	7E-6		0.08	[0.045-0.115] unit increase	Illumina [7358575] (imputed)	N
1627	chr4	136654788	136654789	rs112883645	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q28.3	NR	rs112883645-G	0.01045	2E-9	(S100A8)	0.2441	NR unit increase	Illumina [1671387] (imputed)	N
1627	chr4	136669669	136669670	rs6837069	30787463	Escala-Garcia M	2019-02-21	Br J Cancer	Genome-wide association study of germline variants and breast cancer-specific mortality.	Breast cancer specific mortality in estrogen receptor negative breast cancer	2,125 European ancestry cases, 14,047 European ancestry controls	NA	4q28.3	NR	rs6837069-?	NR	1E-6		1.9211789	[1.48-2.50]	Affymetrix, Illumina [~ 10400000] (imputed)	N
1628	chr4	136741112	136741113	rs114392405	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q28.3	NR	rs114392405-T	0.0122	3E-8	(ATIC)	0.2002	NR unit decrease	Illumina [1671387] (imputed)	N
1629	chr4	136958488	136958489	rs111704153	33483693	Clements CC	2021-01-22	Mol Psychiatry	Genome-wide association study of patients with a severe major depressive episode treated with electroconvulsive therapy.	Major depressive disorder and major depressive episode treated with electroconvulsive therapy	1,796 European ancestry cases, 3,290 European ancestry controls	NA	4q28.3	NR	rs111704153-?	NR	5E-6		0.6717	[0.5-0.84]	Illumina [NR] (imputed)	N
1630	chr4	136972540	136972541	rs10018743	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	4q28.3		rs10018743-A	NR	9E-12		0.0121	[0.0086-0.0156] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1630	chr4	136972540	136972541	rs10018743	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	4q28.3		rs10018743-A	NR	3E-14		0.0154	[0.011-0.019] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1630	chr4	137048598	137048599	rs10019997	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	4q28.3	NR	rs10019997-T	NR	7E-21		0.015	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
1630	chr4	137053958	137053959	rs4241964	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	4q28.3		rs4241964-T	0.5248	4E-12		0.015	[0.011-0.019] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
1630	chr4	137053958	137053959	rs4241964	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	4q28.3		rs4241964-G	0.47829999999999995	9E-16		1.029442		Affymetrix [11880941] (imputed)	N
1630	chr4	137053958	137053959	rs4241964	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	4q28.3	intergenic	rs4241964-G	0.47829999999999995	9E-16		1.0291158		Affymetrix [11880941] (imputed)	N
1630	chr4	137053958	137053959	rs4241964	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	4q28.3		rs4241964-?	NR	4E-13				NR [~ 8900000] (imputed)	N
1630	chr4	137055897	137055898	rs62309385	28654678	Mandage R	2017-06-27	PLoS One	Genetic factors affecting EBV copy number in lymphoblastoid cell lines derived from the 1000 Genome Project samples.	Epstein-Barr virus copy number in lymphoblastoid cell lines	389 East Asian ancestry individuals, 189 South Asian ancestry individuals, 492 European ancestry individuals, 467 Sub-Saharan African ancestry individuals, 59 African American individuals, 157 Hispanic/Latino individuals	NA	4q28.3	LINC00613, PCDH18	rs62309385-?	NR	1E-6	(Hispanic/Latino)			NR [at least 880000]	N
1630	chr4	137071334	137071335	rs1451109	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	4q28.3	NR	rs1451109-?	NR	4E-18				Affymetrix [~ 8270000] (imputed)	N
1630	chr4	137071334	137071335	rs1451109	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	4q28.3	NA	rs1451109-A	0.6849	1E-19		0.0158	[0.012-0.019] unit decrease	NR [~ 27400000] (imputed)	N
1630	chr4	137071334	137071335	rs1451109	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	4q28.3	NA	rs1451109-A	0.6849	1E-19		0.0158	[0.012-0.019] unit decrease	NR [~ 27400000] (imputed)	N
1630	chr4	137083192	137083193	rs1296328	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	4q28.3		rs1296328-A	0.44	1E-11				NR [NR] (imputed)	N
1630	chr4	137083192	137083193	rs1296328	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	4q28.3		rs1296328-A	0.44	6E-15		0.012	% increase	NR [NR] (imputed)	N
1630	chr4	137083192	137083193	rs1296328	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		4q28.3	PCDH18	rs1296328-A	0.440914	3E-17		0.0117384	[0.009-0.0145] unit increase	Affymetrix [12370749]	N
1630	chr4	137083192	137083193	rs1296328	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	4q28.3		rs1296328-?	NR	7E-23				NR [~ 8900000] (imputed)	N
1630	chr4	137083192	137083193	rs1296328	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	4q28.3	PABPC4L	rs1296328-A	0.4457	4E-8		1.04	[1.02-1.05]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1630	chr4	137094047	137094048	rs1724557	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	4q28.3	NR	rs1724557-C	0.4175	5E-8		0.0254	[0.016-0.035] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1630	chr4	137094047	137094048	rs1724557	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	4q28.3	NR	rs1724557-C	0.4121	7E-10		0.015576561	[0.011-0.021] unit increase	Affymetrix [10549349] (imputed)	N
1630	chr4	137094748	137094749	rs10009124	25742292	Aschebrook-Kilfoy B	2015-03-05	PLoS One	Genome-wide association study of parity in Bangladeshi women.	Number of pregnancies	1,686 Bangladeshi women	NA	4q28.3	intergenic	rs10009124-?		8E-7		0.27	unit increase	Illumina [1211988] (imputed)	N
1630	chr4	137094748	137094749	rs10009124	25742292	Aschebrook-Kilfoy B	2015-03-05	PLoS One	Genome-wide association study of parity in Bangladeshi women.	Number of children	1,686 Bangladeshi women	NA	4q28.3	intergenic	rs10009124-?		8E-8		0.31	unit increase	Illumina [1211988] (imputed)	N
1631	chr4	137138360	137138361	rs12506698	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	4q28.3	Intergenic	rs12506698-T	0.5017	1E-9	(MTAG)	0.0109	[0.0074-0.0144] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1631	chr4	137143103	137143104	rs1901259	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	4q28.3	Intergenic	rs1901259-G	0.5009	3E-9		0.0115	[0.0078-0.0152] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1631	chr4	137147695	137147696	rs35189091	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	4q28.3	PCDH18	rs35189091-A	0.627856	6E-10		0.00899022	[0.0061-0.0118] unit increase	Affymetrix [12370749]	N
1631	chr4	137206187	137206188	rs1597598	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	4q28.3	NR	rs1597598-?	NR	2E-11				Affymetrix [~ 8270000] (imputed)	N
1631	chr4	137222199	137222200	rs72984811	31596875	Traylor M	2019-10-09	PLoS One	Genetic associations with radiological damage in rheumatoid arthritis: Meta-analysis of seven genome-wide association studies of 2,775 cases.	Joint damage in rheumatoid arthritis	2,527 European ancestry individuals, 196 African ancestry individuals, 52 individuals	NA	4q28.3	intergenic	rs72984811-?	NR	4E-6				Affymetrix, Illumina [4802696] (imputed)	N
1632	chr4	137258761	137258762	rs6833536	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q28.3	NR	rs6833536-T	0.05923	2E-8	(APOA1)	0.8393	NR unit increase	Illumina [1671387] (imputed)	N
1632	chr4	137345548	137345549	rs13116011	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels (BMI interaction)	up to 15,007 European ancestry male individuals, up to 16,943 European ancestry female individuals	NA	4q28.3	PABPC4L, PCDH18	rs13116011-T	0.84	9E-7	(Men)	0.019576594	[0.012-0.027] unit increase	Affymetrix, Illumina [at least 188473] (imputed)	N
1633	chr4	137417230	137417231	rs12505589	30787463	Escala-Garcia M	2019-02-21	Br J Cancer	Genome-wide association study of germline variants and breast cancer-specific mortality.	Breast cancer specific mortality in estrogen receptor positive breast cancer	4,116 European ancestry cases, 60,055 European ancestry controls	NA	4q28.3	NR	rs12505589-?	NR	4E-6		1.1673031	[1.09-1.25]	Affymetrix, Illumina [~ 10400000] (imputed)	N
1633	chr4	137425466	137425467	rs7698266	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	4q28.3		rs7698266-A	0.6478	1E-10	(conditional-joint)	0.0095	[0.0066-0.0124] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1633	chr4	137474782	137474783	rs7696257	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	4q28.3		rs7696257-G	0.645	2E-9		0.007	[0.005-0.009] unit decrease	NR [NR] (imputed)	N
1633	chr4	137474782	137474783	rs7696257	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	4q28.3	NR	rs7696257-A	0.366	5E-12		0.00778155	[0.0056-0.01] unit increase	NR [9732723] (imputed)	N
1633	chr4	137474782	137474783	rs7696257	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	4q28.3	NR	rs7696257-A	0.366	7E-9		0.015331268	[0.01-0.021] unit increase	NR [~ 10000000] (imputed)	N
1633	chr4	137479868	137479869	rs9683947	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	4q28.3	Intergenic	rs9683947-A	0.6945	2E-9	(MTAG)	0.015	[0.01-0.02] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1634	chr4	137526583	137526584	rs10012307	23725790	Renteria ME	2013-06-03	Twin Res Hum Genet	GWAS of DNA methylation variation within imprinting control regions suggests parent-of-origin association.	DNA methylation (parent-of-origin)	1,024 European ancestry individuals	NA	4q28.3	TERF1P3	rs10012307-T	0.06	2E-8	(H19-ICR CpG 09-10)			Illumina [515966]	N
1634	chr4	137526994	137526995	rs10014934	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	4q28.3	Intergenic	rs10014934-T	0.6285	1E-15	(MTAG)	0.0108	[0.0081-0.0135] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1634	chr4	137528056	137528057	rs59222824	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	4q28.3	NR	rs59222824-?	NR	4E-7		5.087	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1634	chr4	137528074	137528075	rs10006237	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	4q28.3	Intergenic	rs10006237-T	0.3688	4E-9	(MTAG)	0.0101	[0.0068-0.0134] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1634	chr4	137529846	137529847	rs17048801	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	4q28.3		rs17048801-A	0.3909	3E-13		0.0106	[0.0079-0.0133] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1635	chr4	137654648	137654649	rs144192875	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Cardio-cerebrovascular disease in diabetes mellitus	497 Korean ancestry cases, 4,815 Korean ancestry controls	NA	4q28.3		rs144192875-T	0.02281	3E-6		2.339	[1.636-3.345]	Affymetrix [7975321] (imputed)	N
1635	chr4	137660382	137660383	rs6813479	20834067	Yashin AI	2010-09-01	Aging (Albany NY)	Joint influence of small-effect genetic variants on human longevity.	Longevity	1,173 individuals	NA	4q28.3	RP11-138I17.1	rs6813479-?	NR	1E-6	(less than or equal to)			NR [~ 550000]	N
1635	chr4	137691749	137691750	rs4864363	26926045	Adhikari K	2016-03-01	Nat Commun	A genome-wide association scan in admixed Latin Americans identifies loci influencing facial and scalp hair features.	Scalp hair shape	6,357 Latin American individuals	NA	4q28.3	intergenic	rs4864363-?	NR	4E-7				Illumina [9143600] (imputed)	N
1635	chr4	137707852	137707853	rs1460148	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Faecalibacterium)	1,068 Japanese ancestry individuals	NA	4q28.3	intergenic	rs1460148-A	0.50	1E-6		0.0524	[0.031-0.073] unit increase	Illumina [6380737] (imputed)	N
1635	chr4	137728917	137728918	rs11099412	28794112	Christophersen IE	2017-08-01	Circ Cardiovasc Genet	Fifteen Genetic Loci Associated With the Electrocardiographic P Wave.	P wave terminal force	33,955 European ancestry individuals, 6,778 African individuals	NA	4q28.3	PCDH18	rs11099412-A	0.11	3E-9		244.0	[163.64-324.36] ms x uV increase	Affymetrix, Illumina [at least 2402234] (imputed)	N
1635	chr4	137747271	137747272	rs184753612	34074324	Wan JY	2021-06-01	Diabetol Metab Syndr	Genome-wide association analysis of metabolic syndrome quantitative traits in the GENNID multiethnic family study.	Triglyceride levels	281 African American individuals from 73 families, 516 European ancestry individuals from 75 families, 125 Japanese American individuals from 15 families, 598 Mexican American individuals from 96 families	NA	4q28.3	NONE, BC031238	rs184753612-A	0.02	1E-6	(Hispanic/Latino)	0.69	[0.42-0.96] unit increase	Illumina [up to 13042663] (imputed)	N
1637	chr4	137968479	137968480	rs62314748	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Small vessel stroke	333 Indian ancestry cases, 2,154 Indian ancestry controls	NA	4q28.3		rs62314748-?	NR	7E-6		0.9435478	[0.919969299236789-0.967730594473278]	Illumina [7827597] (imputed)	N
1637	chr4	137999525	137999526	rs12647735	29703844	van Zuydam NR	2018-04-27	Diabetes	A Genome-Wide Association Study of Diabetic Kidney Disease in Subjects With Type 2 Diabetes.	Chronic kidney disease and diabetic kidney disease in type 2 diabetes	408 European ancestry cases, 1,890 European ancestry controls	1,408 European ancestry cases, 3,840 European ancestry controls, 268 Asian cases, 632 Asian controls, 75 Chinese ancestry cases, 119 Chinese ancestry controls	4q28.3	NR	rs12647735-?		2E-6	(EA)	1.45	[1.33-1.59]	Affymetrix, Illumina [up to 9343778] (imputed)	N
1638	chr4	138080722	138080723	rs151302295	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	4q28.3	NR	rs151302295-?	NR	6E-6		0.537849	[0.3-0.77] unit increase	NR [13958389] (imputed)	N
1638	chr4	138083867	138083868	rs139672165	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental extreme longevity (95 years and older)	1,339 middle-aged British cases, 40,934 middle-aged British controls	NA	4q28.3	NR	rs139672165-?	NR	5E-6		0.01969	[0.011-0.028] unit decrease	Affymetrix [9658292] (imputed)	N
1638	chr4	138091011	138091012	rs75900745	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	4q28.3	NR	rs75900745-?	NR	2E-6				Affymetrix [5486770] (imputed)	N
1638	chr4	138119506	138119507	rs1554075	34586716	Chen J	2021-09-29	Mol Genet Genomic Med	Heritability and genome-wide association study of blood pressure in Chinese adult twins.	Pulse pressure	137 Chinese ancestry twins	NA	4q28.3		rs1554075-?	NR	9E-6				Illumina [7401356] (imputed)	N
1638	chr4	138134580	138134581	rs10519410	23719583	Kerns SL	2013-05-26	Radiother Oncol	Genome-wide association study identifies a region on chromosome 11q14.3 associated with late rectal bleeding following radiation therapy for prostate cancer.	Adverse response to radiation therapy	79 European, African, Asian, and Hispanic ancestry cases, 241 European, African, Asian, and Hispanic ancestry controls	107 European, African, Asian, and Hispanic ancestry cases, 671 European, African, Asian, and Hispanic ancestry controls	4q28.3	LOC646316, PCDH18	rs10519410-?	0.20	1E-6		1.5	[1.0-2.3]	Affymetrix [614453]	N
1639	chr4	138154811	138154812	rs10004839	23393555	Jensen RA	2013-02-05	PLoS One	Genome-wide association study of retinopathy in individuals without diabetes.	Retinopathy in non-diabetics	19,411 European ancestry individuals	NA	4q28.3	PCDH18	rs10004839-T	0.02	5E-6		0.57	[0.32-0.82] unit increase	Illumina [2675979] (imputed)	N
1639	chr4	138213838	138213839	rs72718015	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls, 22,356 East Asian ancestry cases, 156,370 East Asian ancestry controls	NA	4q28.3		rs72718015-G	NR	4E-10		0.0588	[0.04-0.077] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1639	chr4	138227608	138227609	rs987360	22832960	Service SK	2012-05-15	Transl Psychiatry	A genome-wide meta-analysis of association studies of Cloninger's Temperament Scales.	Temperament	Up to 12,433 European ancestry individuals	NA	4q28.3	PCDH18	rs987360-T	0.401	2E-6	(Novelty seeking)	0.27	unit increase	Affymetrix, Illumina [1252222] (imputed)	N
1639	chr4	138229546	138229547	rs13129710	30498476	Liu H	2018-11-15	Front Endocrinol (Lausanne)	Heritability and Genome-Wide Association Study of Plasma Cholesterol in Chinese Adult Twins.	Total cholesterol levels	139 Chinese ancestry dizygotic twin pairs	NA	4q28.3	LOC105377441	rs13129710-?		8E-6				Illumina [7405822] (imputed)	N
1639	chr4	138247145	138247146	rs10857203	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	4q28.3		rs10857203-?	NR	6E-11				NR [~ 8900000] (imputed)	N
1640	chr4	138342635	138342636	rs13132295	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	4q28.3	NR	rs13132295-?	NR	1E-7				Illumina [at least 7383741] (imputed)	N
1640	chr4	138372072	138372073	rs13106448	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	4q28.3		rs13106448-?	NR	4E-15				NR [~ 8900000] (imputed)	N
1640	chr4	138410134	138410135	rs9761603	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Diastolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	4q28.3	intergenic	rs9761603-A	0.4	8E-7	(EA, initial)	0.232	[0.14-0.32] unit increase	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
1641	chr4	138433161	138433162	rs9683944	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	4q28.3		rs9683944-A	0.7967	2E-10		0.17634776	[0.12-0.23] mmHg decrease	Affymetrix, Illumina [242865] (imputed)	N
1641	chr4	138433161	138433162	rs9683944	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Hypertension	810,865 European ancestry individuals, 21,077 African American individuals, 33,689 South Asian ancestry individuals, 4,586 Hispanic individuals	354,096 European ancestry individuals, 63,282 African American individuals, 4,792 East Asian ancestry individuals, 22,802 Hispanic individuals, 2,695 Native American ancestry individuals	4q28.3		rs9683944-A	0.7623	3E-9		5.92646	z score decrease	Affymetrix, Illumina [246710] (imputed)	N
1641	chr4	138433161	138433162	rs9683944	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	4q28.3		rs9683944-A	0.7968	1E-9		0.10669388	[0.073-0.14] mmHg decrease	Affymetrix, Illumina [242866] (imputed)	N
1641	chr4	138433161	138433162	rs9683944	32589924	Bi W	2020-06-23	Am J Hum Genet	A Fast and Accurate Method for Genome-Wide Time-to-Event Data Analysis and Its Application to UK Biobank.	Essential hypertension (time to event)	76,566 British ancestry cases, 206,305 British ancestry controls	NA	4q28.3	LINC02510, PCDH18	rs9683944-?	NR	4E-8				NR [~ 24000000] (imputed)	N
1641	chr4	138433161	138433162	rs9683944	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	4q28.3	PCDH18	rs9683944-G	0.204222	4E-9		0.043979447	[0.029-0.059] unit increase	Affymetrix [7288503] (imputed)	N
1641	chr4	138439629	138439630	rs9330353	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	4q28.3		rs9330353-A	NR	2E-9		0.0114	[0.0077-0.0151] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1641	chr4	138439629	138439630	rs9330353	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	4q28.3		rs9330353-?	NR	7E-9				NR [~ 8900000] (imputed)	N
1641	chr4	138439629	138439630	rs9330353	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	4q28.3	intergenic	rs9330353-A	0.4499	2E-15		0.2169	[0.16-0.27] mmHg increase	Affymetrix [NR] (imputed)	N
1641	chr4	138441529	138441530	rs9286351	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls, 20,367 East Asian ancestry cases, 158,359 East Asian ancestry controls	NA	4q28.3		rs9286351-G	NR	3E-11		0.0445	[0.031-0.058] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1641	chr4	138441529	138441530	rs9286351	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls	NA	4q28.3	PCDH18	rs9286351-G	0.416748	1E-9		0.05106684	[0.035-0.067] unit increase	Affymetrix [7288503] (imputed)	N
1641	chr4	138464841	138464842	rs7439567	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	4q28.3	RP11-714L20.1	rs7439567-T	0.4155	7E-21		0.2355	[0.19-0.28] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1641	chr4	138482405	138482406	rs140723350	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	RANTES levels	3,421 Finnish ancestry individuals	NA	4q28.3	NR	rs140723350-C		2E-6		0.4494	[0.27-0.63] SD units decrease	NR [10700000] (imputed)	N
1641	chr4	138497580	138497581	rs34687569	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	4q28.3	PCDH18	rs34687569-?		5E-11				Affymetrix, Illumina [NR] (imputed)	N
1641	chr4	138503833	138503834	rs11735612	28641744	Guo W	2017-07-01	Eur Neuropsychopharmacol	Polygenic risk score and heritability estimates reveals a genetic relationship between ASD and OCD.	Obsessive-compulsive disorder or autism spectrum disorder	2,998 European ancestry obsessive-compulsive disorder cases, 6,898 European ancestry autism spectrum disorder cases	NA	4q28.3	PCDH18	rs11735612-A	NR	4E-6		66.5774	[38.14-95.02] unit increase	Illumina [6995140] (imputed)	N
1641	chr4	138527907	138527908	rs10019234	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x short total sleep time interaction (2df test)	2,990 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,300 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, at least 11,842 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,350 European ancestry controls, 4,047 Hispanic/Latino controls	at least 220 African American short sleepers, 326 East Asian ancestry short sleepers, up to 5,288 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 1,292 East Asian ancestry controls, up to 20,844 European ancestry controls, 10,062 Hispanic controls	4q28.3	PCDH18	rs10019234-?	NR	1E-9		0.01178	[0.0069-0.0167] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1641	chr4	138539316	138539317	rs11944781	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental extreme longevity (95 years and older)	1,339 middle-aged British cases, 40,934 middle-aged British controls	NA	4q28.3	NR	rs11944781-?	NR	4E-6		0.01169	[0.0067-0.0167] unit decrease	Affymetrix [9658292] (imputed)	N
1642	chr4	138553596	138553597	rs145941402	34838041	Naderi E	2021-11-27	J Transl Med	A two-stage genome-wide association study of radiation-induced acute toxicity in head and neck cancer.	radiation-induced toxicity (physician-rated acute mucositis)	864 Dutch ancestry individuals	246 Dutch ancestry individuals	4q28.3		rs145941402-A	NR	8E-6		0.3036816	[0.17-0.44] increase	Illumina [6334277] (imputed)	N
1642	chr4	138582710	138582711	rs17049741	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	4q28.3	PCDH18	rs17049741-A	0.15	8E-7	(Snack intake )	0.05	[NR] kcal increase	Illumina [899892]	N
1643	chr4	138692249	138692250	rs2313132	19165918	Graham RR	2008-08-01	Nat Genet	Genetic variants near TNFAIP3 on 6q23 are associated with systemic lupus erythematosus.	Systemic lupus erythematosus	431 European ancestry cases, 2,155 European ancestry controls	447 European ancestry trios, 293 trios	4q28.3	intergenic	rs2313132-?	0.12	8E-6			[NR]	Affymetrix [313238]	N
1643	chr4	138724864	138724865	rs11938462	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin I concentration	1,606 African American individuals	NA	4q28.3		rs11938462-?	NR	4E-6		0.21	[0.12-0.3] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1643	chr4	138733885	138733886	rs11940232	30263053	Deng X	2018-09-17	BMC Proc	Genome-wide association study for multiple phenotype analysis.	HDL cholesterol and triglyceride levels (pleiotropy)	821 individuals	NA	4q28.3	NA	rs11940232-?	NR	1E-6				Affymetrix [587358]	N
1644	chr4	138877721	138877722	rs75275910	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Smoking x experiences in childhood (felt loved by family member) interaction	11,465 European ancestry individuals	NA	4q28.3		rs75275910-?	NR	3E-9		1.0821	[0.72-1.44] unit decrease	Affymetrix [NR] (imputed)	N
1644	chr4	138913130	138913131	rs12186244	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	4q28.3		rs12186244-?	NR	7E-12				NR [~ 8900000] (imputed)	N
1644	chr4	138919058	138919059	rs6836734	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on self-rated math ability (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	4q28.3		rs6836734-?	NR	6E-9				NR [NR]	N
1644	chr4	138919058	138919059	rs6836734	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on highest math class (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	4q28.3		rs6836734-?	NR	2E-8				NR [NR]	N
1645	chr4	138983439	138983440	rs142910628	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		LINC00616	rs142910628-?	NR	2E-9	(female)	0.658134	[NR] unit increase	Affymetrix [NR] (imputed)	N
1645	chr4	139010585	139010586	rs2241848	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on cognitive performance (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	4q28.3		rs2241848-?	NR	2E-8				NR [NR]	N
1645	chr4	139013400	139013401	rs10032297	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Neuroticism	274,107 British ancestry individuals	NA	4q28.3	NR	rs10032297-A	0.3958	4E-9		0.01136	[0.0076-0.0151] unit decrease	NR [8968716] (imputed)	N
1645	chr4	139026057	139026058	rs10519447	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on educational attainment (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	4q28.3		rs10519447-?	NR	1E-8				NR [NR]	N
1645	chr4	139026057	139026058	rs10519447	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on Townsend deprivation index (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	4q28.3		rs10519447-?	NR	5E-8				NR [NR]	N
1645	chr4	139043651	139043652	rs1595693	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	4q28.3	NR	rs1595693-T	NR	3E-8		5.539	z score increase	Affymetrix [10847151] (imputed)	N
1645	chr4	139053094	139053095	rs1371325	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	4q28.3	NR	rs1371325-G	0.596994224603647	9E-11		0.0060647754	[0.0042-0.0079] unit increase	NR [NR]	N
1645	chr4	139053094	139053095	rs1371325	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	4q28.3	NR	rs1371325-G	0.596994224603647	8E-10		0.007410874	[0.005-0.0098] unit increase	NR [NR]	N
1645	chr4	139053094	139053095	rs1371325	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	4q28.3	NR	rs1371325-G	0.596994224603647	5E-10		0.0097917365	[0.0067-0.0129] unit increase	NR [NR]	N
1645	chr4	139053094	139053095	rs1371325	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	4q28.3	NR	rs1371325-G	0.596994224603647	2E-9		0.007904349	[0.0053-0.0105] unit increase	NR [NR]	N
1645	chr4	139053568	139053569	rs4530683	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	4q28.3	SLC7A11	rs4530683-A	0.414956	3E-8		5.52	z score decrease	NR [10847151] (imputed)	N
1645	chr4	139055923	139055924	rs141074776	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		SLC7A11-AS1	rs141074776-?	NR	1E-9	(female)	0.748262	[NR] unit increase	Affymetrix [NR] (imputed)	N
1646	chr4	139073934	139073935	rs6842049	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on average household income before tax (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	4q28.3		rs6842049-?	NR	2E-8				NR [NR]	N
1646	chr4	139073934	139073935	rs6842049	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	4q28.3		rs6842049-?	NR	7E-9				NR [~ 8900000] (imputed)	N
1646	chr4	139089462	139089463	rs7674870	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	4q28.3	SLC7A11-AS1	rs7674870-A	0.616021	3E-12	(hypotaurine)	0.161	[0.12-0.21] unit increase	Illumina [13039987] (imputed)	N
1646	chr4	139089462	139089463	rs7674870	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	4q28.3	SLC7A11	rs7674870-G	0.411998	3E-12		0.01573121	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1646	chr4	139089462	139089463	rs7674870	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	4q28.3	SLC7A11	rs7674870-G	0.411951	2E-13		0.016563723	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1646	chr4	139089462	139089463	rs7674870	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	4q28.3	NR	rs7674870-G	0.418714847255294	2E-9		0.0059141736	[0.004-0.0078] unit decrease	NR [NR]	N
1646	chr4	139089462	139089463	rs7674870	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	4q28.3		rs7674870-?	NR	7E-11				NR [~ 8900000] (imputed)	N
1646	chr4	139092718	139092719	rs13120371	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q28.3	NR	rs13120371-G	0.327571	1E-13				Affymetrix, Illumina [19872809] (imputed)	N
1646	chr4	139092718	139092719	rs13120371	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	4q28.3	NR	rs13120371-G	0.327238	3E-13		0.015459	[0.011-0.02] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
1646	chr4	139097916	139097917	rs35551178	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	4q28.3		rs35551178-T	NR	5E-10		0.0103	[0.0072-0.0134] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
1646	chr4	139099629	139099630	rs185712459	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Monocyte chemoattractant protein-1 levels	8,293 Finnish ancestry individuals	NA	4q28.3	NR	rs185712459-C		2E-6		0.389	[0.23-0.55] SD units increase	NR [10700000] (imputed)	N
1646	chr4	139129024	139129025	rs182651559	33075057	Li X	2020-10-19	PLoS Genet	Automated feature extraction from population wearable device data identified novel loci associated with sleep and circadian rhythms.	Sleep duration (> 10 hours)	90,515 individuals	NA	4q28.3	SLC7A11	rs182651559-T	NR	1E-8		4.989	[4.44-5.54] unit increase	NR [11024754] (imputed)	N
1646	chr4	139130132	139130133	rs11734488	27490719	Bacelis J	2016-08-04	PLoS One	Literature-Informed Analysis of a Genome-Wide Association Study of Gestational Age in Norwegian Women and Children Suggests Involvement of Inflammatory Pathways.	Gestational age at birth in premature rupture of membrane-initiated deliveries (child effect)	225 Norwegian ancestry children	NA	4q28.3	NR	rs11734488-G		4E-6				NR [525577]	N
1646	chr4	139144394	139144395	rs111500641	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q28.3	NR	rs111500641-C	0.01568	7E-10	(HSPA6)	0.02861	NR unit increase	Illumina [1671387] (imputed)	N
1647	chr4	139268122	139268123	rs80052780	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (Multivariate)	1,390 European ancestry individuals	NA	4q28.3		rs80052780-?	NR	4E-7	(MLM)			Illumina [~ 9000000] (imputed)	N
1647	chr4	139301709	139301710	rs750104238	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-to-hip ratio adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,049 whole genome sequenced individuals, 29,518 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,001 Mylopotamos (founder/genetic isolate) individuals, 867 Pomak (founder/genetic isolate) individuals	206,045 European ancestry individuals	4q28.3	LINC00499	rs750104238-T	0.0012	4E-6		1.514	[0.87-2.16] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1647	chr4	139305142	139305143	rs13108768	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage colony stimulating factor levels	840 Finnish ancestry individuals	NA	4q28.3	NR	rs13108768-C	NR	6E-6		0.1515	[0.086-0.217] SD units increase	NR [10700000] (imputed)	N
1648	chr4	139430042	139430043	rs299109	29855537	Hirata T	2018-05-31	Sci Rep	Japanese GWAS identifies variants for bust-size, dysmenorrhea, and menstrual fever that are eQTLs for relevant protein-coding or long non-coding RNAs.	Breast size	5,609 Japanese ancestry female individuals	NA	4q31.1	NR	rs299109-A	0.245177164	7E-6		0.1386	[0.078-0.199] unit increase	Affymetrix [536506]	N
1648	chr4	139433466	139433467	rs299118	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	4q31.1		rs299118-?	NR	3E-13				NR [~ 8900000] (imputed)	N
1649	chr4	139493397	139493398	rs1450439	25044411	Liao SY	2014-07-08	Genet Epidemiol	Genome-wide association and network analysis of lung function in the Framingham Heart Study.	Lung function (forced expiratory volume in 1 second)	2,698 European ancestry individuals	NA	4q31.1	intergenic	rs1450439-A	0.2373	4E-6		67.9	[NR] unit increase	Affymetrix [300895]	N
1649	chr4	139556478	139556479	rs41401551	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q31.1	NR	rs41401551-C	0.01568	5E-9	(GNMT)	1.151	NR unit increase	Illumina [1671387] (imputed)	N
1649	chr4	139584100	139584101	rs6835813	34224794	Wang K	2021-07-02	Prog Neuropsychopharmacol Biol Psychiatry	Genome-wide association study identified INSC gene associated with Trail Making Test Part A and Alzheimer's disease related cognitive phenotypes.	Global cognition (Clinical Dementia Rating Scale Sum of Boxes)	684 European ancestry individuals, 17 Hispanic individuals, 36 African American individuals, 18 individuals	NA	4q31.1		rs6835813-A	NR	4E-6		0.4807	[0.28-0.68] unit decrease	NR [534934]	N
1649	chr4	139590669	139590670	rs17050570	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	4q31.1	intergenic	rs17050570-A	NR	7E-6	(AA)			Illumina [up to 11995908] (imputed)	N
1649	chr4	139590669	139590670	rs17050570	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	4q31.1	intergenic	rs17050570-A	NR	7E-6				Illumina [up to 11995908] (imputed)	N
1650	chr4	139632690	139632691	rs5000944	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	4q31.1		rs5000944-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1650	chr4	139636198	139636199	rs4475190	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	4q31.1	NR	rs4475190-C	0.2681	5E-7		0.0068	[0.0043-0.0093] unit decrease	NR [7666894] (imputed)	N
1650	chr4	139687926	139687927	rs10030317	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Parahippocampal gyrus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	4q31.1	NR	rs10030317-?		4E-6				Illumina [4322238] (imputed)	N
1650	chr4	139697373	139697374	rs12501358	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	4q31.1	NR	rs12501358-?	NR	1E-8				Illumina [7760689] (imputed)	N
1650	chr4	139710428	139710429	rs59730210	29503163	Yu H	2018-03-01	Lancet Psychiatry	Five novel loci associated with antipsychotic treatment response in patients with schizophrenia: a genome-wide association study.	Response to ziprazidone in schizophrenia	408 Han Chinese ancestry cases	NA	4q31.1	CCRN4L	rs59730210-G	NR	3E-6		34.625	[20.37-48.88] unit increase	Illumina [6097251] (imputed)	N
1650	chr4	139710493	139710494	rs1948897	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	4q31.1		rs1948897-G	0.435	7E-11		0.008	[0.006-0.01] unit decrease	NR [NR] (imputed)	N
1650	chr4	139711725	139711726	rs13136052	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	4q31.1	NR	rs13136052-T	0.435	2E-10		0.00696769	[0.0048-0.0091] unit decrease	NR [9732723] (imputed)	N
1650	chr4	139712055	139712056	rs11726181	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	4q31.1	Intergenic	rs11726181-A	0.2653	4E-8	(MTAG)	0.0082	[0.0053-0.0111] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1651	chr4	139750073	139750074	rs12186148	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	4q31.1		rs12186148-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1651	chr4	139786803	139786804	rs73852526	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	4q31.1	NR	rs73852526-A	0.83	2E-7		1.0	[-1.0188-3.0188]	Affymetrix [at least 143006] (imputed)	N
1651	chr4	139809180	139809181	rs77803164	24468470	Zhang C	2013-12-26	Neurobiol Aging	Genetic susceptibility to accelerated cognitive decline in the US Health and Retirement Study.	Cognitive decline (age-related)	5,765 European ancestry individuals, 890 African American individuals	NA	4q31.1	intergenic	rs77803164-?	NR	4E-6	(EA)	0.0222	[0.01279-0.03167] unit decrease	Illumina [1530316]	N
1651	chr4	139831571	139831572	rs4616695	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	4q31.1	NR	rs4616695-G	0.532	2E-8		0.00643895	[0.0042-0.0087] unit decrease	NR [9732723] (imputed)	N
1652	chr4	139872578	139872579	rs6845079	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	4q31.1		rs6845079-G	0.798	3E-9		0.009	[0.007-0.011] unit decrease	NR [NR] (imputed)	N
1652	chr4	139918443	139918444	rs12511998	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	4q31.1	LINC00499, CCRN4L	rs12511998-?	NR	6E-7		0.015319924	[0.0093-0.0214] unit increase	Illumina [27896057] (imputed)	N
1652	chr4	139927129	139927130	rs4286469	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	4q31.1		rs4286469-G	NR	3E-17		0.0121	[0.0094-0.0148] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1652	chr4	139939652	139939653	rs938836	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	4q31.1	CCRN4L	rs938836-G	0.5329999999999999	1E-9		1.0214263		Affymetrix [11880941] (imputed)	N
1652	chr4	139945107	139945108	rs17050678	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	4q31.1		rs17050678-T	NR	2E-8		0.0107	[0.007-0.0144] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
1653	chr4	140113890	140113891	rs10005828	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	4q31.1		rs10005828-A	0.623079	1E-11		0.0139837	[0.0099-0.018] unit decrease	Illumina [13479295] (imputed)	N
1654	chr4	140118239	140118240	rs13120076	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	4q31.1		rs13120076-?	NR	6E-14				NR [~ 8900000] (imputed)	N
1654	chr4	140174640	140174641	rs2320163	32528159	Choquet H	2020-06-11	Commun Biol	A multiethnic genome-wide analysis of 44,039 individuals identifies 41 new loci associated with central corneal thickness.	Central corneal thickness	32,292 European ancestry individuals, 9,623 East Asian ancestry individuals, 1,367 Hispanic/Latino individuals, 757 African American  individuals	NA	4q31.1	MGARP	rs2320163-?	NA	4E-11		1.59	[1.12-2.06] unit increase	Affymetrix [5541230] (imputed)	N
1654	chr4	140219456	140219457	rs13143477	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	4q31.1		rs13143477-?	NR	2E-16				NR [~ 8900000] (imputed)	N
1656	chr4	140423133	140423134	rs17050782	19247474	Caporaso N	2009-02-27	PLoS One	Genome-wide and candidate gene association study of cigarette smoking behaviors.	Smoking behavior	2,617 European ancestry smokers, 1,725 European ancestry controls	NA	4q31.1	SET7	rs17050782-?	0.21	8E-6	(SMKAGE)	0.03	[NR] years increase	Illumina [~ 518000]	N
1656	chr4	140447104	140447105	rs7680948	26861389	D'Adamo CR	2016-02-06	Nutrients	A Common Variant in the SETD7 Gene Predicts Serum Lycopene Concentrations.	Serum lycopene concentrations	441 Old Order Amish individuals from 308 families	NA		SETD7	rs7680948-A	0.2	5E-9		0.19	[0.13-0.25] ug/dL decrease	Affymetrix [2302013] (imputed)	N
1656	chr4	140465077	140465078	rs148514273	29097388	Magvanjav O	2017-11-02	J Am Heart Assoc	Genetic Variants Associated With Uncontrolled Blood Pressure on Thiazide Diuretic/?-Blocker Combination Therapy in the PEAR (Pharmacogenomic Evaluation of Antihypertensive Responses) and INVEST (International Verapamil-SR Trandolapril Study) Trials.	Diastolic blood pressure in combination therapy (beta blocker and thiazide diuretic)	314 European ancestry individuals	221 European ancestry individuals, 193 Hispanic individuals	4q31.1	SETD7	rs148514273-A	0.03	3E-7		7.85	unit decrease	Illumina [NR] (imputed)	N
1656	chr4	140466603	140466604	rs6828434	31005965	Coltell O	2019-04-21	Am J Clin Nutr	Association between taste perception and adiposity in overweight or obese older subjects with metabolic syndrome and identification of novel taste-related genes.	Salty taste perception in obesity with metabolic syndrome	378 individuals	NA	4q31.1	SETD7	rs6828434-T	0.309	4E-6		0.541	[0.31-0.77] unit decrease	Illumina [622468]	N
1656	chr4	140502028	140502029	rs535984676	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Lean body mass	3,399 whole genome sequenced individuals, 11,801 European ancestry individuals	10,676 European ancestry individuals	4q31.1	SETD7	rs535984676-A	0.0015	3E-6		1.1933	[0.69-1.69] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1656	chr4	140503722	140503723	rs148722960	33491795	Timmer T	2021-01-25	Vox Sang	Genetic determinants of ferritin, haemoglobin levels and haemoglobin trajectories: results from Donor InSight.	Ferritin levels	2,649 European ancestry individuals	NA	4q31.1	SETD7	rs148722960-G	0.016	7E-6		0.4	[0.23-0.57] unit increase	Affymetrix [7435577] (imputed)	N
1657	chr4	140517907	140517908	rs706334	26112879	Rudkowska I	2015-06-20	J Nutrigenet Nutrigenomics	Interaction between Common Genetic Variants and Total Fat Intake on Low-Density Lipoprotein Peak Particle Diameter: A Genome-Wide Association Study.	LDL peak particle diameter (total fat intake interaction)	541 European ancestry individuals	NA	4q31.1	intergenic	rs706334-A	0.476722533	8E-7		0.036302876	[0.022-0.051] unit decrease	Illumina [1632371] (imputed)	N
1657	chr4	140520527	140520528	rs72728723	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	4q31.1	Intergenic	rs72728723-A	NR	2E-7	(between families)	5.201	unit increase	Affymetrix [up to 15107142] (imputed)	N
1657	chr4	140587413	140587414	rs3822045	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	4q31.1	NR	rs3822045-?	NR	9E-6		4.452	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1657	chr4	140631358	140631359	rs17357657	33597122	Verbitsky M	2021-02-17	J Am Soc Nephrol	Copy Number Variant Analysis and Genome-wide Association Study Identify Loci with Large Effect for Vesicoureteral Reflux.	Vesicoureteral reflux	1,395 European ancestry cases, 5,366 European ancestry controls	NA	4q31.1	NR	rs17357657-C	0.1375	8E-7	(dominant, male)	1.8712375	[1.45832424628034-2.40106406616361]	Affymetrix, Illumina [6131010] (imputed)	N
1658	chr4	140640282	140640283	rs10519504	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	4q31.1		rs10519504-T	0.1561	7E-10		0.0119	[0.0082-0.0156] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1658	chr4	140650729	140650730	rs2246759	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	4q31.1	MGST2	rs2246759-?	NR	2E-6	(F1P; F6P; G1P; G6P)	0.17625819	[0.1-0.25] unit increase	Affymetrix [at least 2500000] (imputed)	N
1658	chr4	140678280	140678281	rs4863687	25234806	Dijkstra AE	2014-09-18	Eur Respir J	Dissecting the genetics of chronic mucus hypersecretion in smokers with and without COPD.	Chronic mucus hypersecretion	342 European ancestry cases, 1,006 European ancestry controls	130 European ancestry cases, 2,313 European ancestry controls	4q31.1	MAML3	rs4863687-A	0.28	8E-6		1.48	[NR]	Illumina [522636]	N
1658	chr4	140697630	140697631	rs17050907	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	4q31.1	NR	rs17050907-?	NR	3E-6				Affymetrix [NR]	N
1658	chr4	140717159	140717160	rs76241605	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	4q31.1		rs76241605-A	0.1142	6E-10		0.0139	[0.0096-0.0182] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1658	chr4	140725749	140725750	rs72730235	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	4q31.1	MAML3	rs72730235-T	0.3284	2E-8		0.011996961	[0.0078-0.0162] unit increase	Affymetrix [up to 18485882] (imputed)	N
1658	chr4	140729345	140729346	rs795989	32279069	Rovira P	2020-04-12	Neuropsychopharmacology	Shared genetic background between children and adults with attention deficit/hyperactivity disorder.	Attention deficit hyperactivity disorder (childhood)	10,617 European ancestry cases, 16,537 European ancestry controls	NA	4q31.1	NR	rs795989-A	0.68	2E-6		1.11	[1.07-1.17]	Illumina [~ 1072558] (imputed)	N
1658	chr4	140729402	140729403	rs75596547	33594131	Donati G	2021-02-16	Sci Rep	Evidence for specificity of polygenic contributions to attainment in English, maths and science during adolescence.	Academic attainment (English)	5,983 European ancestry adolescents	NA	4q31.1	MAML3	rs75596547-T	NR	5E-6		0.259	[0.15-0.37] unit decrease	Illumina [6319684] (imputed)	N
1658	chr4	140731959	140731960	rs1158326	29855537	Hirata T	2018-05-31	Sci Rep	Japanese GWAS identifies variants for bust-size, dysmenorrhea, and menstrual fever that are eQTLs for relevant protein-coding or long non-coding RNAs.	Menstruation quality of life impact (loss of concentration)	995 Japanese ancestry female cases, 4,739 Japanese ancestry female controls	1,081 Japanese ancestry female cases, 4,533 Japanese ancestry female controls	4q31.1	NR	rs1158326-G	0.127768339	7E-6		0.2249695	[0.13-0.32] unit increase	Affymetrix [536506]	N
1658	chr4	140749744	140749745	rs13112683	26584805	Dorajoo R	2015-11-19	Genes Nutr	A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.	Plasma omega-6 polyunsaturated fatty acid levels (gamma-linolenic acid)	717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls	NA	4q31.1	NR	rs13112683-T	0.838	9E-6		0.1341	[0.075-0.193] unit decrease	Illumina [up to 1980188] (imputed)	N
1658	chr4	140751120	140751121	rs1869717	27790247	He L	2016-11-03	Front Genet	Pleiotropic Meta-Analyses of Longitudinal Studies Discover Novel Genetic Variants Associated with Age-Related Diseases.	Age-related diseases, mortality and associated endophenotypes	9,618 European ancestry individuals	19,796 European ancestry individuals	4q31.1	NR	rs1869717-?	NR	5E-8				Affymetrix [NR]	N
1658	chr4	140753102	140753103	rs12643771	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	4q31.1	Intergenic	rs12643771-T	0.3096	1E-13	(MTAG)	0.0133	[0.0098-0.0168] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1658	chr4	140753102	140753103	rs12643771	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	4q31.1		rs12643771-T	0.3094	1E-17		0.013	[0.01-0.016] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1658	chr4	140753102	140753103	rs12643771	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	4q31.1	Intergenic	rs12643771-T	0.3094	9E-20	(MTAG)	0.0129	[0.01-0.016] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1658	chr4	140764123	140764124	rs4863692	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	4q31.1		rs4863692-T	0.334	6E-11		53.57122	z score increase	NR [6814003]	N
1658	chr4	140764123	140764124	rs4863692	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	4q31.1	NR	rs4863692-T	0.3179	5E-12		0.01650315	NR unit increase	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
1658	chr4	140767702	140767703	rs11100307	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	4q31.1	MAML3	rs11100307-?	NR	5E-14		0.016192827	[0.012-0.02] unit decrease	NR [7306098]	N
1659	chr4	140773769	140773770	rs4863516	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	4q31.1	Intergenic	rs4863516-T	0.6708	2E-13	(MTAG)	0.0179	[0.013-0.023] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1659	chr4	140773857	140773858	rs4863517	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	4q31.1	MAML3	rs4863517-T	NR	6E-9		0.018991074	[0.013-0.025] unit increase	Affymetrix [NR]	N
1659	chr4	140780767	140780768	rs35853157	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	4q31.1	NR	rs35853157-A	0.308151	2E-8		0.038271554	[0.025-0.052] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1659	chr4	140780767	140780768	rs35853157	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	4q31.1	Intergenic	rs35853157-A	0.6713	1E-8		0.0172	[0.011-0.023] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
1659	chr4	140782541	140782542	rs17367750	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	4q31.1	MAML3	rs17367750-T	0.3268	4E-11		0.014254408	[0.01-0.018] unit increase	Affymetrix [up to 18485882] (imputed)	N
1659	chr4	140786360	140786361	rs3106323	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	4q31.1	MAML3	rs3106323-C	0.4555	4E-9		0.011945372	[0.008-0.0159] unit decrease	Affymetrix [up to 18485882] (imputed)	N
1659	chr4	140793530	140793531	rs2667360	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	4q31.1		rs2667360-T	NR	7E-10		0.011	[0.0075-0.0145] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1659	chr4	140793530	140793531	rs2667360	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	4q31.1	NR	rs2667360-?	NR	4E-11				Affymetrix [~ 8270000] (imputed)	N
1659	chr4	140795326	140795327	rs1531070	23708190	Hu Z	2013-05-26	Nat Genet	A genome-wide association study identifies two risk loci for congenital heart malformations in Han Chinese populations.	Congenital heart malformation	945 Han Chinese ancestry cases, 1,246 Han Chinese ancestry controls	2,160 Han Chinese ancestry cases, 3,866 Han Chinese ancestry controls	4q31.1	MAML3	rs1531070-A	0.11	5E-12		1.4	[1.27-1.54]	Illumina [708275]	N
1659	chr4	140799266	140799267	rs1455480	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	4q31.1		rs1455480-G	0.553	2E-12		0.008	[0.006-0.01] unit decrease	NR [NR] (imputed)	N
1659	chr4	140804900	140804901	rs72712511	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	4q31.1	MAML3	rs72712511-A	NR	1E-9		0.019913377	[0.013-0.026] unit decrease	Affymetrix [NR]	N
1659	chr4	140806276	140806277	rs12508981	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	4q31.1	MAML3	rs12508981-A	0.4648	7E-9		0.011753041	[0.0078-0.0157] unit decrease	Affymetrix [up to 18485882] (imputed)	N
1659	chr4	140846240	140846241	rs769688	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	4q31.1	NR	rs769688-T	0.666611947473903	2E-9		0.0058665345	[0.004-0.0078] unit decrease	NR [NR]	N
1659	chr4	140846240	140846241	rs769688	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	4q31.1	NR	rs769688-T	0.666611947473903	2E-8		0.0072086905	[0.0047-0.0097] unit decrease	NR [NR]	N
1659	chr4	140846240	140846241	rs769688	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	4q31.1	NR	rs769688-T	0.666611947473903	2E-8		0.00602538	[0.0039-0.0081] unit decrease	NR [NR]	N
1659	chr4	140862678	140862681	rs141468630	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	4q31.1		rs141468630-G	NR	3E-11		0.0134	[0.0095-0.0173] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1659	chr4	140863364	140863365	rs57800857	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	4q31.1		rs57800857-A	0.63	7E-12				NR [NR] (imputed)	N
1659	chr4	140863364	140863365	rs57800857	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	High density lipoprotein cholesterol levels	392,965 European ancestry individuals	NA	4q31.1		rs57800857-A	0.63	1E-6		0.009	mmol/L decrease	NR [NR] (imputed)	N
1659	chr4	140863364	140863365	rs57800857	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	4q31.1		rs57800857-A	0.63	9E-18		0.013	% increase	NR [NR] (imputed)	N
1659	chr4	140863364	140863365	rs57800857	33128006	Timmins IR	2020-10-30	Commun Biol	Genome-wide association study of self-reported walking pace suggests beneficial effects of brisk walking on health and survival.	Walking pace	450,967 European ancestry individuals	NA	4q31.1	MAML3	rs57800857-A	NR	6E-11		0.0085207	[0.006-0.0111] unit decrease	Affymetrix [10061374] (imputed)	N
1659	chr4	140863364	140863365	rs57800857	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	4q31.1	NR	rs57800857-?	NR	3E-13				Affymetrix [~ 8270000] (imputed)	N
1659	chr4	140863364	140863365	rs57800857	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	4q31.1		rs57800857-?	NR	1E-12				NR [~ 8900000] (imputed)	N
1659	chr4	140863364	140863365	rs57800857	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	4q31.1	NA	rs57800857-A	0.6344	3E-15		0.0157	[0.012-0.02] unit increase	NR [~ 27400000] (imputed)	N
1659	chr4	140863364	140863365	rs57800857	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	4q31.1	NA	rs57800857-A	0.6344	3E-15		0.0157	[0.012-0.02] unit increase	NR [~ 27400000] (imputed)	N
1659	chr4	140868893	140868894	rs769662	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	4q31.1	NR	rs769662-G	0.624579	1E-8		0.0121278	[0.008-0.0163] unit increase	NR [NR]	N
1659	chr4	140868893	140868894	rs769662	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	4q31.1		rs769662-A	0.3736	9E-11	(conditional-joint)	0.0095	[0.0066-0.0124] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1659	chr4	140873756	140873757	rs58491357	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	4q31.1	MAML3	rs58491357-?		9E-7	(additive)	0.252	[0.15-0.35] unit increase	Illumina [1492601] (imputed)	N
1659	chr4	140873756	140873757	rs58491357	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	4q31.1	MAML3	rs58491357-?		3E-6	(heterogeneous)	0.257	[0.15-0.36] unit increase	Illumina [1492601] (imputed)	N
1659	chr4	140873756	140873757	rs58491357	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	4q31.1	MAML3	rs58491357-?		1E-6	(dominant)	0.264	[NR] unit increase	Illumina [1492601] (imputed)	N
1659	chr4	140874759	140874760	rs809955	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	4q31.1	MAML3	rs809955-G	0.633963	1E-13		0.0156996	[0.011-0.02] unit decrease	NR [16516521] (imputed)	N
1659	chr4	140874759	140874760	rs809955	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		4q31.1	MAML3	rs809955-G	0.633959	1E-12		0.0101003	[0.0073-0.0129] unit increase	Affymetrix [12370749]	N
1659	chr4	140874759	140874760	rs809955	31527586	An J	2019-09-16	Nat Commun	Gastroesophageal reflux GWAS identifies risk loci that also associate with subsequent severe esophageal diseases.	Gastroesophageal reflux disease	80,265 European and unknown ancestry cases, 305,011 European and unknown ancestry controls	NA	4q31.1	MAML3, BC040304	rs809955-G	NR	2E-10		1.0375893	[1.0259-1.0491]	Affymetrix, Illumina [up to 7600000] (imputed)	N
1659	chr4	140874759	140874760	rs809955	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	4q31.1	NR	rs809955-A	0.3655	7E-10		0.015842557	[0.011-0.021] unit decrease	Affymetrix [10549349] (imputed)	N
1659	chr4	140874759	140874760	rs809955	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	4q31.1	NA	rs809955-A	0.3669	2E-14		0.0155	[0.012-0.019] unit decrease	NR [~ 27400000] (imputed)	N
1659	chr4	140886962	140886963	rs13109980	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	4q31.1		rs13109980-G	0.675	8E-17		0.01	[0.008-0.012] unit increase	NR [NR] (imputed)	N
1659	chr4	140886962	140886963	rs13109980	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	4q31.1	NR	rs13109980-A	0.326	6E-24		0.0116389	[0.0094-0.0139] unit decrease	NR [9732723] (imputed)	N
1659	chr4	140886962	140886963	rs13109980	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	4q31.1	NR	rs13109980-A	0.326	3E-16		0.022181554	[0.017-0.028] unit decrease	NR [~ 10000000] (imputed)	N
1659	chr4	140886962	140886963	rs13109980	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	4q31.1	NR	rs13109980-A	0.326	3E-19		0.0139735	[0.011-0.017] unit increase	NR [9732723] (imputed)	N
1659	chr4	140893286	140893287	rs56218782	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	4q31.1		rs56218782-C	NR	1E-8		0.039	[0.026-0.052] unit decrease	Affymetrix, Illumina [25845091] (imputed)	N
1660	chr4	140903154	140903155	rs35319653	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	4q31.1		rs35319653-T	0.3433	8E-16		0.0119	[0.009-0.0148] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1660	chr4	140906389	140906390	rs12505942	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	4q31.1	NR	rs12505942-C	0.3385	7E-10		0.0298	[0.02-0.039] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
1660	chr4	140906389	140906390	rs12505942	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	4q31.1	NR	rs12505942-C	0.3133	2E-12		0.0294	[0.021-0.038] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1660	chr4	140908754	140908755	rs13136239	31194737	Johnston KJA	2019-06-13	PLoS Genet	Genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	387,649 British ancestry individuals	NA	4q31.1	MAML3	rs13136239-G	0.3508	4E-8		0.0141	[0.009-0.0192] unit increase	NR [NR]	N
1660	chr4	140908754	140908755	rs13136239	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation	up to 341,427 European ancestry individuals	NA	4q31.1	NR	rs13136239-A	0.342	6E-9		0.015	[0.0099-0.0201] unit increase	NR [~ 10000000] (imputed)	N
1660	chr4	140908754	140908755	rs13136239	28632202	Witt SH	2017-06-20	Transl Psychiatry	Genome-wide association study of borderline personality disorder reveals genetic overlap with bipolar disorder, major depression and schizophrenia.	Borderline personality disorder	998 European ancestry cases, 1,545 European ancestry controls	NA	4q31.1	MAML3	rs13136239-G	0.6466	6E-6		1.3711778	[1.23-1.51]	Illumina [10736316] (imputed)	N
1660	chr4	140909430	140909431	rs35612722	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	4q31.1	Intergenic	rs35612722-A	0.3755	6E-14	(MTAG)	0.0102	[0.0075-0.0129] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1660	chr4	140911731	140911732	rs13134500	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Subjective well-being (MTAG)	388,538 European ancestry individuals	NA	4q31.1	NR	rs13134500-A	0.5728	4E-8		0.0103	[0.0066-0.014] unit increase	Illumina [NR] (imputed)	N
1660	chr4	140919034	140919035	rs6536630	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	4q31.1		rs6536630-?	NR	3E-11		0.0179	unit decrease	NR [NR]	N
1660	chr4	140925869	140925870	rs1877075	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms (MTAG)	354,862 European ancestry individuals	NA	4q31.1	NR	rs1877075-G	0.6532	3E-8		0.0127	[0.0082-0.0172] unit increase	Illumina [NR] (imputed)	N
1660	chr4	140925869	140925870	rs1877075	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Depression	105,739 European ancestry individuals, 16,471 European ancestry major depressive disorder cases, 58,835 European ancestry controls	368,890 European ancestry individuals	4q31.1	NR	rs1877075-A	NR	2E-6		4.810405	[NR] z score decrease	Affymetrix [up to 6544862] (imputed)	N
1660	chr4	140934145	140934146	rs17373621	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	4q31.1		rs17373621-?	NR	7E-10				NR [~ 8900000] (imputed)	N
1660	chr4	140935263	140935264	rs17373738	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	4q31.1	SCOC	rs17373738-C	0.6177	2E-9		0.012387507	[0.0083-0.0164] unit increase	Affymetrix [11514654] (imputed)	N
1660	chr4	140939109	140939110	rs36072649	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking initiation	842,717 European ancestry individuals	NA	4q31.1	MAML3	rs36072649-A		1E-9		0.978	[NR]	Affymetrix [up to 79000000] (imputed)	N
1660	chr4	140940097	140940097	rs10641969	33608531	Wu Y	2021-02-19	Nat Commun	GWAS of peptic ulcer disease implicates Helicobacter pylori infection, other gastrointestinal disorders and depression.	Gastroesophageal reflux disease, peptic ulcer disease and/or corresponding medications and treatment	90,175 European ancestry cases, 366,152 European ancestry controls	NA	4q31.1	NR	rs10641969-T	0.62	3E-9		1.03		NR [8546065] (imputed)	N
1660	chr4	140943168	140943169	rs56166763	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (anti-inflammatory and antirheumatic products, non-steroids)	74,150 European ancestry cases, 90,370 European ancestry controls	NA	4q31.1	MAML3	rs56166763-C	0.368625	1E-8		0.0408539	[0.027-0.055] unit decrease	Affymetrix [7288503] (imputed)	N
1660	chr4	140945965	140945966	rs1912528	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	4q31.1	NR	rs1912528-T	0.3574	2E-9		0.014004885	NR unit increase	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
1660	chr4	140946827	140946828	rs17314804	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first birth	542,901 European ancestry individuals	NA	4q31.1	MAML3	rs17314804-T	0.3567	3E-12		0.0662	[0.048-0.085] unit increase	NR [9744772] (imputed)	N
1660	chr4	140948834	140948835	rs77821238	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	4q31.1	NR	rs77821238-C	NR	4E-8		1.054	[1.03-1.07]	Affymetrix, Illumina [29235255] (imputed)	N
1660	chr4	140952109	140952110	rs11100449	30289880	Qi G	2018-10-05	PLoS Genet	Heritability informed power optimization (HIPO) leads to enhanced detection of genetic associations across multiple traits.	Social science traits (pleiotropy) (HIPO component 1)	up to 630,791 European ancestry individuals	NA	4q31.1	MAML3	rs11100449-?	NR	8E-9				NR [2100000]	N
1660	chr4	140960501	140960502	rs17374883	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Positive affect	180,281 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	4q31.1	NR	rs17374883-T	0.7132	4E-7		0.02	[0.012-0.028] unit increase	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
1660	chr4	140972263	140972264	rs10030552	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	4q31.1	SCOC	rs10030552-A	0.2604	4E-9		0.014528261	[0.0097-0.0194] unit increase	Affymetrix [11514654] (imputed)	N
1662	chr4	141188506	141188507	rs186589516	33961016	Moksnes MR	2021-05-07	Hum Mol Genet	Genome-wide association study of cardiac troponin I in the general population.	Change in high-sensitivity cardiac troponin I concentration	5,178 European ancestry individuals	NA	4q31.1		rs186589516-A	0.0011	1E-7		1.65	[1.04-2.26] unit increase	Illumina [21233433] (imputed)	N
1663	chr4	141306764	141306765	rs72716373	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Rectal cancer	2,091 European ancestry cases, 410,350 European ancestry controls	NA	4q31.1		rs72716373-C	0.011799	1E-6		1.7262213	NR	Affymetrix [7846216] (imputed)	N
1663	chr4	141317111	141317112	rs142360750	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals, 21,077 African American individuals, 33,689 South Asian ancestry individuals, 4,586 Hispanic individuals	354,096 European ancestry individuals, 63,282 African American individuals, 4,792 East Asian ancestry individuals, 22,802 Hispanic individuals, 2,695 Native American ancestry individuals	4q31.1		rs142360750-A	0.0055	3E-10		3.4609003	[2.17-4.76] mmHg decrease	Affymetrix, Illumina [247315] (imputed)	N
1663	chr4	141323161	141323162	rs2567241	27271309	Li C	2016-08-01	Hypertension	Genome-Wide Gene-Sodium Interaction Analyses on Blood Pressure: The Genetic Epidemiology Network of Salt-Sensitivity Study.	Systolic blood pressure x sodium interaction (2df test)	1,876 Han Chinese ancestry individuals	775 Chinese ancestry individuals	4q31.1	CLGN	rs2567241-?	NR	4E-12				Affymetrix [2216774] (imputed)	N
1663	chr4	141323161	141323162	rs2567241	27271309	Li C	2016-08-01	Hypertension	Genome-Wide Gene-Sodium Interaction Analyses on Blood Pressure: The Genetic Epidemiology Network of Salt-Sensitivity Study.	Mean arterial pressure x sodium interaction (2df test)	1,876 Han Chinese ancestry individuals	775 Chinese ancestry individuals	4q31.1	CLGN	rs2567241-?	NR	3E-15				Affymetrix [2216774] (imputed)	N
1663	chr4	141323161	141323162	rs2567241	27271309	Li C	2016-08-01	Hypertension	Genome-Wide Gene-Sodium Interaction Analyses on Blood Pressure: The Genetic Epidemiology Network of Salt-Sensitivity Study.	Diastolic blood pressure x sodium interaction (2df test)	1,876 Han Chinese ancestry individuals	775 Chinese ancestry individuals	4q31.1	CLGN	rs2567241-?	NR	3E-22				Affymetrix [2216774] (imputed)	N
1664	chr4	141436502	141436503	rs184579809	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Spinal canal stenosis	9,660 European ancestry cases, 445,127 European ancestry controls, 661 East Asian ancestry cases, 178,065 East Asian ancestry controls	NA	4q31.1		rs184579809-C	NR	3E-8		0.9728	[0.63-1.32] unit increase	Affymetrix, Illumina [25840105] (imputed)	N
1664	chr4	141467190	141467192	rs200580547	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Reading ability (multivariate)	up to 3,468 European ancestry individuals	NA	4q31.1	NR	rs200580547-?		3E-6				Illumina [up to 6969139] (imputed)	N
1664	chr4	141467190	141467192	rs200580547	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Rapid automised naming of letters	2,563 European ancestry individuals	NA	4q31.1	ELMOD2	rs200580547-CAT	0.86874	5E-7		0.252972	[0.15-0.35] unit increase	Illumina [6952813] (imputed)	N
1664	chr4	141500704	141500705	rs143638193	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	4q31.1	Intergenic	rs143638193-T	NR	4E-9	(between families)	5.895	unit increase	Affymetrix [up to 15107142] (imputed)	N
1665	chr4	141621369	141621370	rs555778703	33293427	Emami NC	2020-12-08	Cancer Res	A large-scale association study detects novel rare variants, risk genes, functional elements, and polygenic architecture of prostate cancer susceptibility.	Prostate cancer	14,113 European ancestry cases, 194,140 European ancestry controls	NA	4q31.21	TBC1D9	rs555778703-G	NR	2E-8		1.82	1.48-2.24	Affymetrix [at least 232408] (imputed)	N
1665	chr4	141651856	141651857	rs74543778	34074324	Wan JY	2021-06-01	Diabetol Metab Syndr	Genome-wide association analysis of metabolic syndrome quantitative traits in the GENNID multiethnic family study.	Waist circumference	281 African American individuals from 73 families, 516 European ancestry individuals from 75 families, 125 Japanese American individuals from 15 families, 598 Mexican American individuals from 96 families	NA	4q31.21	TBC1D9	rs74543778-T	0.04	8E-7	(Hispanic/Latino)	0.11	[0.071-0.149] unit increase	Illumina [up to 13042663] (imputed)	N
1666	chr4	141812644	141812645	rs1863307	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	4q31.21	RNF150	rs1863307-G	NR	2E-9		0.017872	[0.012-0.024] unit increase	Affymetrix [321788] (imputed)	N
1666	chr4	141816656	141816657	rs767761	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	4q31.21	RNF150	rs767761-A	NR	5E-9		0.017246	[0.011-0.023] unit increase	Affymetrix [321788] (imputed)	N
1667	chr4	141820156	141820157	rs41337747	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	4q31.21	NR	rs41337747-?	NR	2E-212				Affymetrix [NR]	N
1667	chr4	141828468	141828469	rs2303414	31324189	Kim W	2019-07-19	Respir Res	DSP variants may be associated with longitudinal change in quantitative emphysema.	Emphysema annual change measurement in smokers (adjusted lung density)	4,427 European ancestry individuals, 1,158 African American individuals	NA	4q31.21	RNF150	rs2303414-G	NR	9E-6		0.39	[0.22-0.56] unit decrease	Illumina [NR] (imputed)	N
1667	chr4	141851354	141851355	rs13118519	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	4q31.21		rs13118519-T	NR	9E-13		0.0137	[0.01-0.0174] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1667	chr4	141851354	141851355	rs13118519	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	4q31.21	RNF150	rs13118519-T	0.501559	2E-24		0.023318963	[0.019-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
1667	chr4	141851354	141851355	rs13118519	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	4q31.21	RNF150	rs13118519-T	0.501568	3E-14		0.017396789	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1667	chr4	141851354	141851355	rs13118519	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q31.21	NR	rs13118519-T	0.517816	1E-26				Affymetrix, Illumina [24588908] (imputed)	N
1667	chr4	141851354	141851355	rs13118519	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	4q31.21	NR	rs13118519-T	0.503918	6E-23		0.018389	[0.015-0.022] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1667	chr4	141851431	141851432	rs13144869	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	4q31.21	RNF150	rs13144869-C	0.5009	3E-14		0.02794252	[0.021-0.035] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1667	chr4	141863823	141863824	rs71608415	31712607	Nudel R	2019-11-11	Transl Psychiatry	A large-scale genomic investigation of susceptibility to infection and its association with mental disorders in the Danish population.	Hospital contact for infections	21,728 Danish ancestry cases with psychiatric disorders, 6,744 Danish ancestry cases, 24,161 Danish ancestry controls with psychiatric disorders, 12,901 Danish ancestry controls	NA	4q31.21		rs71608415-T	NR	1E-6		1.2112	[1.13-1.29]	Illumina [11600722] (imputed)	N
1667	chr4	141867866	141867867	rs6850499	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 106)	19,670 European ancestry individuals	NA	4q31.21		rs6850499-?	NR	5E-8				NR [9705931] (imputed)	N
1667	chr4	141898747	141898748	rs79187391	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	4q31.21	NR	rs79187391-?	NR	2E-6		3042.7168	NR unit decrease	Illumina [2379855]	N
1667	chr4	141918503	141918504	rs73858679	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	4q31.21	RNF150	rs73858679-?		2E-8				Affymetrix, Illumina [NR] (imputed)	N
1668	chr4	142000671	142000672	rs78634984	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Endometrial cancer	909 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	4q31.21	Intergenic	rs78634984-?		7E-6		2.85	[1.81-4.50]	Illumina [7645193] (imputed)	N
1668	chr4	142005572	142005573	rs10007052	23144326	Kim DK	2012-11-09	Am J Respir Crit Care Med	Genome-wide association analysis of blood biomarkers in chronic obstructive pulmonary disease.	Chronic obstructive pulmonary disease-related biomarkers	Up to 1,951 European ancestry smokers	NA	4q31.21	RNF150	rs10007052-A	0.23	1E-7	(TNFA)			Illumina [588352]	N
1668	chr4	142020901	142020902	rs10519584	34271060	DeVore SB	2021-07-13	J Allergy Clin Immunol	Novel Role for Caspase Recruitment Domain Family Member 14 and its Genetic Variant rs11652075 in Skin Filaggrin Homeostasis.	Non(never)-lesional skin FLG expression levels in childhood atopic dermatitis	240 Black or unknown ancestry individuals	NA	4q31.21		rs10519584-T	NR	3E-6	4	1.13	unit decrease	Illumina [487523]	N
1669	chr4	142117423	142117424	rs1550057	31005965	Coltell O	2019-04-21	Am J Clin Nutr	Association between taste perception and adiposity in overweight or obese older subjects with metabolic syndrome and identification of novel taste-related genes.	Bitter taste perception (6-n-propylthiouracil) in obesity with metabolic syndrome	368 individuals	NA	4q31.21	RNF150	rs1550057-G	0.315	3E-6		0.555	[0.33-0.78] unit increase	Illumina [622468]	N
1669	chr4	142117423	142117424	rs1550057	20585324	Dick DM	2010-06-27	Mol Psychiatry	Genome-wide association study of conduct disorder symptomatology.	Conduct disorder	872 European, African American and other ancestry substance dependence cases, 3,091 European, African American and other ancestry controls	NA	4q31.21	intergenic	rs1550057-C	0.757	4E-6		1.39	[1.21-1.61]	Illumina [948658]	N
1669	chr4	142130930	142130931	rs34402449	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	4q31.21	NR	rs34402449-C	0.24	3E-7		0.0064401	[0.004-0.0089] unit decrease	NR [9732723] (imputed)	N
1669	chr4	142142728	142142729	rs17007017	20585324	Dick DM	2010-06-27	Mol Psychiatry	Genome-wide association study of conduct disorder symptomatology.	Conduct disorder	872 European, African American and other ancestry substance dependence cases, 3,091 European, African American and other ancestry controls	NA	4q31.21	ZNF330	rs17007017-G	0.685	7E-6		1.34	[1.18-1.52]	Illumina [948658]	N
1671	chr4	142405682	142405683	rs1221680773	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q31.21	NR	rs1221680773-T	0.0122	7E-9	(MGMT)	0.007257	NR unit increase	Illumina [1671387] (imputed)	N
1673	chr4	142652052	142652053	rs6537060	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	4q31.21		rs6537060-A	NR	4E-8		0.0107	[0.0068-0.0146] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
1673	chr4	142675411	142675412	rs9990563	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	4q31.21	INPP4B	rs9990563-?	NR	1E-6	(pyridoxate)	0.26311988	[0.16-0.37] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1673	chr4	142687794	142687795	rs4956410	31311600	Namjou B	2019-07-17	BMC Med	GWAS and enrichment analyses of non-alcoholic fatty liver disease identify new trait-associated genes and pathways across eMERGE Network.	Aspartate aminotransferase levels in non-alcoholic fatty liver disease	1,075 European ancestry individuals	NA	4q31.21	intergenic	rs4956410-A	0.0744879	8E-6		0.34206	[0.19-0.49] unit decrease	NR [7263501] (imputed)	N
1673	chr4	142709722	142709723	rs17007695	19176441	Yang JJ	2009-01-28	JAMA	Genome-wide interrogation of germline genetic variation associated with treatment response in childhood acute lymphoblastic leukemia.	Response to treatment for acute lymphoblastic leukemia	356 European ancestry cases, 53 Black cases, 78 cases	NA	4q31.21	IL15	rs17007695-C	NR	9E-7		2.67	[1.53-4.68]	Affymetrix [476796]	N
1674	chr4	142760931	142760932	rs12647166	33907307	Liu Y	2021-04-27	Int J Obes (Lond)	Genome-wide association study of neck circumference identifies sex-specific loci independent of generalized adiposity.	Neck circumference	6,358 European and African American ancestry women	NA	4q31.21	NR	rs12647166-?	NR	3E-7		0.2844	NR unit increase	Affymetrix, Illumina [7322639] (imputed)	N
1674	chr4	142780231	142780232	rs140081436	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Diastolic blood pressure (baseline)	5,304 African American individuals, 13,137 European ancestry individuals, 1,317 Hispanic individuals, 1,439 admixed individuals, 703 Chinese ancestry individuals	6,500 African American individuals, 2,451 European ancestry individuals, 2,869 Hispanic individuals	4q31.21	NR	rs140081436-T	0.0308	2E-7		10.53	[6.55-14.51] mmHg decrease	Affymetrix, Illumina [NR] (imputed)	N
1674	chr4	142786526	142786527	rs34465541	30999091	Wang Y	2019-04-09	J Affect Disord	Post-traumatic stress following military deployment: Genetic associations and cross-disorder genetic correlations.	Post-traumatic stress disorder symptoms in trauma-exposed soldiers	462 Danish ancestry cases, 2,019 Danish ancestry controls	NA	4q31.21	IL15	rs34465541-C	0.07	3E-8		2.0408163	NR	Illumina [NR] (imputed)	N
1674	chr4	142787329	142787330	rs72714449	33831438	Williams JE	2021-04-05	Genomics	Key genetic variants associated with variation of milk oligosaccharides from diverse human populations.	Human milk oligosaccharide concentration (lacto-N-fucopentaose III) in non-secretors	90 European, Sub-Saharan African, Hispanic or unknown ancestry individuals	NA	4q31.21		rs72714449-?	NR	2E-9				Illumina [1128286]	N
1675	chr4	142976072	142976073	rs2667100	24529757	Xie T	2014-01-17	Neurobiol Aging	Genome-wide association study combining pathway analysis for typical sporadic amyotrophic lateral sclerosis in Chinese Han populations.	Amyotrophic lateral sclerosis (sporadic)	250 Han Chinese ancestry cases, 250 Han Chinese ancestry controls	NA	4q31.21	INPP4B	rs2667100-?		9E-7				Illumina [859311]	N
1676	chr4	143062810	143062811	rs336396	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in smokers	19,883 European ancestry women, up to 16,928 European ancestry men, up to 973 European ancestry individuals, 1,701 African American/Afro-Caribbean ancestry women, 903 African American/Afro-Caribbean ancestry men, 10 Indian Asian ancestry women, 957 Indian Asian ancestry men, 267 Filipino ancestry women, 475 Hispanic/Latino ancestry women, 446 Hispanic/Latino ancestry men	5,485 European ancestry women, 6,471 European ancestry men, 13,416 European ancestry individuals, 253 African American/Afro-Caribbean ancestry women, 208 African American/Afro-Caribbean ancestry men	4q31.21	INPP4B	rs336396-T	0.184	5E-6		0.043	[0.025-0.061] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1676	chr4	143062810	143062811	rs336396	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	4q31.21	INPP4B	rs336396-T	0.182	3E-6				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1676	chr4	143067053	143067054	rs35390852	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		4q31.21	INPP4B	rs35390852-G	0.876193	5E-8		0.0113857	[0.0073-0.0155] unit decrease	Affymetrix [12370749]	N
1676	chr4	143067053	143067054	rs35390852	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	4q31.21	NR	rs35390852-?	NR	9E-9				Affymetrix [~ 8270000] (imputed)	N
1676	chr4	143125947	143125948	rs35107973	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	4q31.21		rs35107973-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1677	chr4	143145066	143145067	rs188426604	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Bacterial meningitis	842 European ancestry cases, 82,778 European ancestry controls	NA	4q31.21	NR	rs188426604-?	NR	6E-6		2.0633	[1.35-2.78] unit decrease	Illumina [at least 560000] (imputed)	N
1677	chr4	143200705	143200706	rs2636649	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	4q31.21	INPP4B	rs2636649-A	0.840249	8E-13		0.022196136	[0.016-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1678	chr4	143268701	143268702	rs1908968	34337005	Duan H	2021-07-17	Biomed Res Int	A Genome-Wide Association Study of Age-Related Hearing Impairment in Middle- and Old-Aged Chinese Twins.	Hearing function (0.5 kHz)	131 Chinese ancestry dizygotic twin pairs	NA			rs1908968-?	NR	8E-6				Illumina [1365315]	N
1678	chr4	143300224	143300225	rs72724537	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q31.21	NR	rs72724537-A	0.01394	1E-9	(ANXA6)	0.5073	NR unit increase	Illumina [1671387] (imputed)	N
1678	chr4	143315472	143315473	rs2173208	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	4q31.21	NR	rs2173208-G	0.411685	5E-10		0.011921	[0.0082-0.0157] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
1678	chr4	143316580	143316581	rs6822835	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	4q31.21		rs6822835-A	NR	4E-8		0.0119	[0.0076-0.0162] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
1678	chr4	143317026	143317027	rs2322549	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	4q31.21		rs2322549-A	NR	6E-7		0.019	unit increase	Affymetrix [at least 7091467] (imputed)	N
1678	chr4	143317026	143317027	rs2322549	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	4q31.21		rs2322549-A	0.389	2E-6	(EA)	0.02	unit increase	Affymetrix [at least 7091467] (imputed)	N
1678	chr4	143317026	143317027	rs2322549	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	265,204 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	4q31.21	NR	rs2322549-A	NR	4E-9		0.018	unit increase	Affymetrix [at least 7091467] (imputed)	N
1678	chr4	143317026	143317027	rs2322549	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	265,204 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	4q31.21	NR	rs2322549-A	NR	9E-7		0.014	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1678	chr4	143321489	143321490	rs1497401	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	4q31.21	INPP4B	rs1497401-C	0.6182	2E-14		0.02838224	[0.021-0.036] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1678	chr4	143326713	143326714	rs7696969	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	4q31.21	INPP4B	rs7696969-G	0.619048	4E-66		0.039936945	[0.035-0.044] unit decrease	Affymetrix [93095623] (imputed)	N
1678	chr4	143338478	143338479	rs113318338	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	4q31.21	NR	rs113318338-?	NR	1E-7		0.0090911	[0.0057-0.0125] unit increase	Affymetrix [805426] (imputed)	N
1678	chr4	143341714	143341715	rs190634129	30487263	Pollack S	2018-11-28	Diabetes	Multiethnic Genome-wide Association Study of Diabetic Retinopathy using Liability Threshold Modeling of Duration of Diabetes and Glycemic Control.	Diabetic retinopathy (all NPDR and PDR)	1,079 European ancestry cases, 1,970 European ancestry controls, 911 African American cases, 941 African American controls	7,178 East Asian ancestry cases, 6,525 East Asian ancestry controls, 214 South East Asian ancestry cases, 557 South East Asian ancestry controls, 315 South Asian ancestry cases, 669 South Asian ancestry controls, 8,205 European ancestry cases, 7,713 European ancestry controls, 1,470 Hispanic cases, 1,240 Hispanic controls	4q31.21	NR	rs190634129-?	NR	2E-6	(AA, adjusted for duration of diabetes and glycemic control)	3.448276	[NR]	Affymetrix, Illumina [NR] (imputed)	N
1679	chr4	143468230	143468231	rs7657917	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	4q31.21		rs7657917-?	NR	6E-9				NR [~ 8900000] (imputed)	N
1679	chr4	143470132	143470133	rs13102150	34356046	Oluwafemi OO	2021-07-01	Genes (Basel)	Genome-Wide Association Studies of Conotruncal Heart Defects with Normally Related Great Vessels in the United States.	Conotruncal heart defects with normally related great vessels	294 European ancestry cases, 2,976 European ancestry controls, 913 cases, 559 controls, 641 trios	NA	4q31.21		rs13102150-?	NR	6E-7				Affymetrix, Illumina [3311160] (imputed)	N
1679	chr4	143486961	143486962	rs11942731	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	4q31.21	INPP4B	rs11942731-A	0.241	1E-8		0.0079	[0.0052-0.0106] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
1679	chr4	143493212	143493213	rs1425522	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Problematic alcohol use (MTAG)	972,915 European ancestry individuals	NA	4q31.21	NR	rs1425522-G	0.8654	8E-11		0.019668229	[0.014-0.026] unit increase	Affymetrix [10613246] (imputed)	N
1679	chr4	143499821	143499822	rs79529098	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation-estimated plasminogen activator inhibitor-1 levels	34,448 European ancestry individuals	NA	4q31.21	NR	rs79529098-G	0.0499	4E-16		412.114	[312.7-511.53] unit decrease	Affymetrix, Illumina [7567618] (imputed)	N
1679	chr4	143503070	143503071	rs1019643	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	4q31.21	NR	rs1019643-G	0.86	3E-12		0.01089	[0.0078-0.0139] unit increase	NR [9732723] (imputed)	N
1679	chr4	143504177	143504178	rs6831966	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	4q31.21		rs6831966-C	0.328	3E-14		0.009	[0.007-0.011] unit decrease	NR [NR] (imputed)	N
1679	chr4	143508338	143508339	rs7688435	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Alcohol consumption (drinks per week)	414,343 European ancestry individuals	NA	4q31.21	INPP4B	rs7688435-T	0.1382	2E-8		0.018201021	[0.012-0.025] unit decrease	Affymetrix [11514936] (imputed)	N
1679	chr4	143510147	143510148	rs1116690	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	4q31.21	NR	rs1116690-G	0.742	2E-8		0.016291233	[0.011-0.022] unit increase	NR [~ 10000000] (imputed)	N
1680	chr4	143538510	143538511	rs77389579	26416757	Band G	2015-09-30	Nature	A novel locus of resistance to severe malaria in a region of ancient balancing selection.	Severe malaria	5,130 African ancestry cases, 5,291 African ancestry controls	5,535 African ancestry cases, 9,948 African ancestry controls	4q31.21	INPP4B	rs77389579-?	NR	6E-6	(East African)			Illumina [~ 38000000] (imputed)	N
1680	chr4	143617303	143617304	rs11943397	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking initiation (ever regular vs never regular)	up to 433,216 European ancestry individuals	NA	4q31.21	INPP4B	rs11943397-C	0.628	2E-9		0.0141	[0.0095-0.0187] unit increase	Illumina [~ 250000] (imputed)	N
1680	chr4	143617303	143617304	rs11943397	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Alcohol consumption (drinks per week)	up to 357,854 European ancestry individuals	NA	4q31.21	INPP4B	rs11943397-C	0.629	1E-8		0.0149	[0.0098-0.02] unit increase	Illumina [~ 250000] (imputed)	N
1680	chr4	143617303	143617304	rs11943397	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	4q31.21		rs11943397-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1680	chr4	143622795	143622796	rs7680631	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter alcoholic beverage consumption	336,448 European ancestry individuals	39,924 European ancestry individuals	4q31.21	INPP4B	rs7680631-T	0.6998	1E-6		0.0054	[0.0032-0.0076] unit increase	Affymetrix [~ 7740000] (imputed)	N
1680	chr4	143622795	143622796	rs7680631	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	4q31.21	USP38	rs7680631-T	0.7007	6E-10		0.01743317	[0.012-0.023] unit increase	Affymetrix [~ 11515000] (imputed)	N
1680	chr4	143633738	143633739	rs76344745	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation-estimated plasminogen activator inhibitor-1 levels	6,149 African American individuals	NA	4q31.21	NR	rs76344745-G	0.8687	5E-13		519.241	[378.31-660.17] unit increase	Affymetrix, Illumina [12990252] (imputed)	N
1680	chr4	143633738	143633739	rs76344745	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation-estimated plasminogen activator inhibitor-1 levels	34,448 European ancestry individuals, 6,149 African American individuals	NA	4q31.21	NR	rs76344745-?	NR	2E-17				Affymetrix, Illumina [6211016] (imputed)	N
1680	chr4	143634745	143634746	rs12644329	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		4q31.21	INPP4B	rs12644329-G	0.371783	3E-8		0.00791227	[0.0051-0.0107] unit increase	Affymetrix [12370749]	N
1680	chr4	143634745	143634746	rs12644329	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	4q31.21	INPP4B	rs12644329-A	0.6434	8E-9		0.0193	[0.013-0.026] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1680	chr4	143634745	143634746	rs12644329	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	4q31.21	NR	rs12644329-A	0.6618	1E-7	(women)	0.0257	[0.016-0.035] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1680	chr4	143648578	143648579	rs4690727	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol consumption (drinks per week) (MTAG)	972,915 European ancestry individuals	NA	4q31.21	NR	rs4690727-G	0.728	3E-11		0.012848434	[0.009-0.0166] unit increase	Affymetrix [NR] (imputed)	N
1680	chr4	143648578	143648579	rs4690727	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	4q31.21	NR	rs4690727-G	0.718	9E-14		0.0109605	[0.0081-0.0138] unit increase	NR [~ 9732723] (imputed)	N
1680	chr4	143648578	143648579	rs4690727	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week)	up to 941,280 European ancestry individuals	NA	4q31.21	NR	rs4690727-G	0.718	2E-11		0.010816985	[0.0076-0.014] unit increase	NR [~ 10000000] (imputed)	N
1681	chr4	143663205	143663206	rs331949	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	4q31.21	USP38	rs331949-T	0.6234	2E-9		0.011949507	[0.008-0.0159] unit increase	Illumina [9339358] (imputed)	N
1681	chr4	143735740	143735741	rs1014464	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Diastolic blood pressure (long-term average)	5,304 African American individuals, 13,137 European ancestry individuals, 1,317 Hispanic individuals, 1,439 admixed individuals, 703 Chinese ancestry individuals	6,500 African American individuals, 2,451 European ancestry individuals, 2,869 Hispanic individuals	4q31.21	NR	rs1014464-A	0.6688	8E-7		0.4059	[0.24-0.57] mmHg decrease	Affymetrix, Illumina [NR] (imputed)	N
1682	chr4	143821342	143821343	rs181338468	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	4q31.21	INPP4B	rs181338468-T	0.0178929694641786	7E-6	(G_Alloprevotella_HB)	1.0012	[0.56-1.44] unit increase	Illumina [7711310] (imputed)	N
1682	chr4	143876048	143876049	rs146083697	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	4q31.21		rs146083697-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1683	chr4	143967650	143967651	rs4690757	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	4q31.21		rs4690757-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1683	chr4	144003158	144003159	rs7686660	21804548	Hirota T	2011-07-31	Nat Genet	Genome-wide association study identifies three new susceptibility loci for adult asthma in the Japanese population.	Asthma	1,532 Japanese ancestry cases, 3,304 Japanese ancestry controls	5,639 Japanese ancestry cases, 24,608 Japanese ancestry controls	4q31.21	LOC729675	rs7686660-T	0.27	2E-12		1.16	[1.11-1.21]	Illumina [458847]	N
1683	chr4	144030039	144030040	rs4690766	29563502	Fejzo MS	2018-03-21	Nat Commun	Placenta and appetite genes GDF15 and IGFBP7 are associated with hyperemesis gravidarum.	Severity of nausea and vomiting of pregnancy	14,988 European ancestry individuals with no NVP, 14,292 European ancestry individuals with slight NVP, 17,786 European individuals with moderate NVP, 5,445 European ancestry individuals with severe NVP, 1,220 European ancestry individuals with very severe NVP	NA	4q31.21	INPP4B, USP38	rs4690766-C	0.358	1E-8		0.04	[0.026-0.054] unit decrease	Illumina [11956931] (imputed)	N
1683	chr4	144043465	144043466	rs11100769	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls, 22,356 East Asian ancestry cases, 156,370 East Asian ancestry controls	NA	4q31.21		rs11100769-T	NR	1E-10		0.0543	[0.038-0.071] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1684	chr4	144053090	144053091	rs6854861	29855537	Hirata T	2018-05-31	Sci Rep	Japanese GWAS identifies variants for bust-size, dysmenorrhea, and menstrual fever that are eQTLs for relevant protein-coding or long non-coding RNAs.	Menstruation quality of life impact (nervousness)	1,904 Japanese ancestry female cases, 3,830 Japanese ancestry female controls	2,017 Japanese ancestry female cases, 3,597 Japanese ancestry female controls	4q31.21	NR	rs6854861-C	0.784706911	8E-6		0.15640192	[0.088-0.225] unit increase	Affymetrix [536506]	N
1684	chr4	144054552	144054554	rs78763922	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	4q31.21	INPP4B, GAB1	rs78763922-?	NR	4E-13				Affymetrix, Illumina [18800000] (imputed)	N
1684	chr4	144054552	144054554	rs78763922	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	4q31.21	INPP4B, GAB1	rs78763922-?	NR	3E-11	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
1684	chr4	144054552	144054554	rs78763922	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	4q31.21	INPP4B, GAB1	rs78763922-?	NR	6E-12				Affymetrix, Illumina [18800000] (imputed)	N
1684	chr4	144054552	144054554	rs78763922	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	4q31.21	INPP4B, GAB1	rs78763922-?		4E-10	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
1684	chr4	144054552	144054554	rs78763922	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	4q31.21	INPP4B, GAB1	rs78763922-?	NR	4E-11	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
1684	chr4	144054552	144054554	rs78763922	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	4q31.21	INPP4B, GAB1	rs78763922-?	NR	2E-11				Affymetrix, Illumina [18800000] (imputed)	N
1684	chr4	144054552	144054554	rs78763922	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	4q31.21	INPP4B, GAB1	rs78763922-?	NR	3E-10				Affymetrix, Illumina [18800000] (imputed)	N
1684	chr4	144054552	144054554	rs78763922	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	4q31.21	INPP4B, GAB1	rs78763922-?	NR	1E-9	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
1684	chr4	144058180	144058181	rs34229152	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	4q31.21	NR	rs34229152-A	0.627278	5E-12		0.013394	[0.0096-0.0172] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1684	chr4	144062656	144062657	rs12647238	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	4q31.21	intergenic	rs12647238-G	0.5372	1E-14		0.2669	[0.2-0.33] mmHg increase	Affymetrix [NR] (imputed)	N
1684	chr4	144063980	144063982	rs140175243	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	4q31.21		rs140175243-A	NR	2E-17		0.0164	[0.013-0.02] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
1684	chr4	144085326	144085327	rs4690774	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	4q31.21		rs4690774-T	NR	2E-8		0.0114	[0.0075-0.0153] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1684	chr4	144085326	144085327	rs4690774	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	4q31.21		rs4690774-T	NR	3E-16		0.0143	[0.011-0.018] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
1684	chr4	144085326	144085327	rs4690774	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	4q31.21		rs4690774-?	NR	2E-14				NR [~ 8900000] (imputed)	N
1684	chr4	144132621	144132622	rs11100781	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	4q31.21	USP38	rs11100781-A	0.307	1E-8		0.0017	[0.0011-0.0023] unit decrease	Affymetrix [NR] (imputed)	N
1684	chr4	144140664	144140665	rs11724872	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	4q31.21	NR	rs11724872-T	0.6	2E-16		0.0152	[0.012-0.019] unit decrease	NR [NR]	N
1684	chr4	144158284	144158285	rs1440411	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	4q31.21	USP38	rs1440411-T	0.6053	1E-15		0.0266	[0.02-0.033] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1684	chr4	144158284	144158285	rs1440411	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	4q31.21	USP38	rs1440411-T	0.5706	1E-12		0.027552	[0.02-0.035] mg/dL decrease	Affymetrix, Illumina [8217339] (imputed)	N
1684	chr4	144158284	144158285	rs1440411	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	4q31.21	NR	rs1440411-T	0.6205	9E-7	(men)	0.0267	[0.016-0.037] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1684	chr4	144158284	144158285	rs1440411	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	4q31.21	NR	rs1440411-T	0.6146	1E-7	(women)	0.0258	[0.016-0.035] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1684	chr4	144158308	144158309	rs1440410	27997041	Traylor M	2016-12-20	Ann Neurol	Genetic variation at 16q24.2 is associated with small vessel stroke.	Ischemic stroke	10,210 European ancestry cases, 12,285 European ancestry controls	7,743 European ancestry cases, 17,970 European ancestry controls	4q31.21	NR	rs1440410-?	NR	5E-6		4.573	z score decrease	Affymetrix, Illumina [NR] (imputed)	N
1684	chr4	144162581	144162582	rs10015412	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls, 49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	4q31.21		rs10015412-C	NR	2E-9		0.041	[0.028-0.054] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1684	chr4	144162581	144162582	rs10015412	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls	NA	4q31.21	USP38	rs10015412-A	0.313756	4E-8		0.047643527	[0.031-0.065] unit increase	Affymetrix [7288503] (imputed)	N
1684	chr4	144164041	144164042	rs6848475	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	4q31.21		rs6848475-T	0.32	3E-8		5.56	z score increase	Affymetrix [9061022] (imputed)	N
1684	chr4	144171747	144171748	rs300934	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	4q31.21		rs300934-G	NR	2E-14		0.0431	[0.032-0.054] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1684	chr4	144171747	144171748	rs300934	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls	NA	4q31.21	USP38	rs300934-T	0.312059	8E-11		0.05524486	[0.039-0.072] unit increase	Affymetrix [7288503] (imputed)	N
1684	chr4	144171747	144171748	rs300934	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	4q31.21	USP38	rs300934-T	0.312643	2E-11		0.043723106	[0.031-0.056] unit increase	Affymetrix [7288503] (imputed)	N
1684	chr4	144175894	144175895	rs75069185	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q31.21	NR	rs75069185-C	0.0122	1E-9	(HSPA6)	0.02806	NR unit increase	Illumina [1671387] (imputed)	N
1685	chr4	144187379	144187380	rs893929	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	4q31.21		rs893929-?	NR	1E-12				NR [~ 8900000] (imputed)	N
1685	chr4	144187379	144187380	rs893929	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	4q31.21	USP38, GAB1	rs893929-G		2E-9		0.233	unit increase	Affymetrix [at least 2696785] (imputed)	N
1685	chr4	144187379	144187380	rs893929	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	4q31.21	USP38, GAB1	rs893929-G		1E-7		0.124	unit increase	Affymetrix [at least 2696785] (imputed)	N
1685	chr4	144195556	144195557	rs11100785	29855537	Hirata T	2018-05-31	Sci Rep	Japanese GWAS identifies variants for bust-size, dysmenorrhea, and menstrual fever that are eQTLs for relevant protein-coding or long non-coding RNAs.	Menstruation quality of life impact (nervousness)	1,904 Japanese ancestry female cases, 3,830 Japanese ancestry female controls	2,017 Japanese ancestry female cases, 3,597 Japanese ancestry female controls	4q31.21	NR	rs11100785-C	0.786230458	4E-6		0.16219163	[0.093-0.231] unit increase	Affymetrix [536506]	N
1685	chr4	144200862	144200868	rs139043764	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	4q31.21	NR	rs139043764-C	0.50026	7E-9		0.012840881	[0.0085-0.0172] unit increase	Affymetrix [93095623] (imputed)	N
1685	chr4	144208761	144208762	rs7690761	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	4q31.21	RP11-364L4.3	rs7690761-A	0.462513	1E-9		0.013843682	[0.0094-0.0183] unit increase	Affymetrix [93095623] (imputed)	N
1685	chr4	144239801	144239802	rs300903	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	4q31.21		rs300903-?	NR	3E-13				NR [~ 8900000] (imputed)	N
1685	chr4	144240037	144240038	rs34853779	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	4q31.21	NR	rs34853779-C	0.584	9E-6	(EA)	0.0288	[0.016-0.042] unit decrease	Illumina [~ 11800000] (imputed)	N
1685	chr4	144249769	144249770	rs300890	27436580	Cui Q	2016-07-19	Hum Mol Genet	An extended genome-wide association study identifies novel susceptibility loci for nasopharyngeal carcinoma.	Nasopharyngeal carcinoma	1,583 Southern Chinese ancestry cases, 2,979 Southern Chinese ancestry controls	5,463 Southern Chinese ancestry cases, 5,591 Southern Chinese ancestry controls	4q31.21	NR	rs300890-A	NR	9E-6		1.127	1.069-1.187	Illumina [463250]	N
1685	chr4	144269848	144269849	rs300917	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in non-diabetics	152,624 European ancestry individuals, 36,369 African American individuals	NA	4q31.21	GAB1	rs300917-C	0.387	3E-8		0.296	[0.19-0.4] unit decrease	Affymetrix [NR] (imputed)	N
1685	chr4	144287996	144287997	rs149070047	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q31.21	NR	rs149070047-G	0.01045	3E-9	(HSD17B4)	1.684	NR unit increase	Illumina [1671387] (imputed)	N
1685	chr4	144287996	144287997	rs149070047	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q31.21	NR	rs149070047-G	0.01045	2E-8	(PHYH)	0.039	NR unit increase	Illumina [1671387] (imputed)	N
1685	chr4	144287996	144287997	rs149070047	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q31.21	NR	rs149070047-G	0.01045	2E-8	(EHHADH)	1.832	NR unit increase	Illumina [1671387] (imputed)	N
1685	chr4	144309691	144309692	rs28989231	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	4q31.21		rs28989231-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1686	chr4	144340911	144340912	rs79949870	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin I concentration	1,606 African American individuals	NA	4q31.21		rs79949870-?	NR	2E-7		0.45	[0.28-0.62] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1686	chr4	144355289	144355290	rs139323761	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	4q31.21		rs139323761-C	NR	1E-11		0.0518	[0.037-0.067] unit decrease	Affymetrix, Illumina [20538307] (imputed)	N
1686	chr4	144357736	144357737	rs3805236	21804548	Hirota T	2011-07-31	Nat Genet	Genome-wide association study identifies three new susceptibility loci for adult asthma in the Japanese population.	Asthma	1,532 Japanese ancestry cases, 3,304 Japanese ancestry controls	5,639 Japanese ancestry cases, 24,608 Japanese ancestry controls	4q31.21	GAB1	rs3805236-G	0.25	7E-8		1.12	[1.08-1.17]	Illumina [458847]	N
1686	chr4	144359489	144359490	rs28925904	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	4q31.21	NR	rs28925904-T	NR	1E-12		0.0576	[0.042-0.073] unit decrease	Affymetrix [9000000] (imputed)	N
1686	chr4	144359489	144359490	rs28925904	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	4q31.21	NR	rs28925904-C	0.97499	4E-16		0.0211688	[0.016-0.026] unit increase	Affymetrix [16582909] (imputed)	N
1686	chr4	144359489	144359490	rs28925904	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	4q31.21	NR	rs28925904-C	0.974702	5E-9		0.0226954	[0.015-0.03] unit increase	Affymetrix [16585854] (imputed)	N
1686	chr4	144359489	144359490	rs28925904	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	4q31.21	NR	rs28925904-C	0.97499	7E-17		0.0242456	[0.018-0.03] unit increase	Affymetrix [16582965] (imputed)	N
1686	chr4	144359489	144359490	rs28925904	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	4q31.21	NR	rs28925904-C	0.974702	8E-11		0.028266	[0.019-0.037] unit increase	Affymetrix [16585866] (imputed)	N
1686	chr4	144359489	144359490	rs28925904	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	4q31.21		rs28925904-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1686	chr4	144417446	144417447	rs28429458	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	4q31.21		rs28429458-A	0.544809	2E-9		0.0124979	[0.0084-0.0166] unit increase	Illumina [13479295] (imputed)	N
1686	chr4	144417446	144417447	rs28429458	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	4q31.21	GAB1, SMARCA5	rs28429458-?	NR	5E-10		0.018255906	[0.013-0.024] unit increase	Illumina [27896057] (imputed)	N
1687	chr4	144480633	144480634	rs17017911	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	4q31.21		rs17017911-?	NR	6E-34				NR [~ 8900000] (imputed)	N
1687	chr4	144513360	144513361	rs567544458	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	4q31.21	FREM3, GUSBP5, SMARCA5, SMARCA5-AS1, GAB1, LOC105377458, MIR3139, GYPE, LOC101927636, USP38, GYPB, LOC105377623, GYPA, INPP4B, HHIP-AS1, HHIP, ANAPC10, ABCE1, OTUD4, IL15, SMAD1, SMAD1-AS2, SMAD1-AS1, MMAA, C4orf51, ZNF827, LOC100507639, ZNF330, RNF150, LINC01095, LSM6, SLC10A7, MIR7849, TBC1D9, TNRC18P1, UCP1, ELMOD2, POU4F2, MGAT4D, TTC29, CLGN, SCOC, SCOC-AS1, MAML3	rs567544458-?		7E-11	(dominant)	0.612	[NR] unit decrease	Illumina [1492601] (imputed)	N
1687	chr4	144513360	144513361	rs567544458	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	4q31.21	FREM3, GUSBP5, SMARCA5, SMARCA5-AS1, GAB1, LOC105377458, MIR3139, GYPE, LOC101927636, USP38, GYPB, LOC105377623, GYPA, INPP4B, HHIP-AS1, HHIP, ANAPC10, ABCE1, OTUD4, IL15, SMAD1, SMAD1-AS2, SMAD1-AS1, MMAA, C4orf51, ZNF827, LOC100507639, ZNF330, RNF150, LINC01095, LSM6, SLC10A7, MIR7849, TBC1D9, TNRC18P1, UCP1, ELMOD2, POU4F2, MGAT4D, TTC29, CLGN, SCOC, SCOC-AS1, MAML3	rs567544458-?		7E-11	(additive)	0.588	[0.41-0.76] unit decrease	Illumina [1492601] (imputed)	N
1687	chr4	144513360	144513361	rs567544458	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	4q31.21	FREM3, GUSBP5, SMARCA5, SMARCA5-AS1, GAB1, LOC105377458, MIR3139, GYPE, LOC101927636, USP38, GYPB, LOC105377623, GYPA, INPP4B, HHIP-AS1, HHIP, ANAPC10, ABCE1, OTUD4, IL15, SMAD1, SMAD1-AS2, SMAD1-AS1, MMAA, C4orf51, ZNF827, LOC100507639, ZNF330, RNF150, LINC01095, LSM6, SLC10A7, MIR7849, TBC1D9, TNRC18P1, UCP1, ELMOD2, POU4F2, MGAT4D, TTC29, CLGN, SCOC, SCOC-AS1, MAML3	rs567544458-?		4E-10	(heterogeneous)	0.596	[0.41-0.78] unit decrease	Illumina [1492601] (imputed)	N
1687	chr4	144554820	144554821	rs1497609	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	4q31.21	NR	rs1497609-C	NR	6E-22		0.0246	[0.02-0.03] unit increase	Affymetrix [9000000] (imputed)	N
1688	chr4	144592285	144592286	rs79753544	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	4q31.21	NR	rs79753544-A	NR	7E-36		0.1069	[0.09-0.124] unit decrease	Affymetrix [9000000] (imputed)	N
1688	chr4	144640680	144640681	rs62337585	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	4q31.21	NR	rs62337585-T	NR	1E-15		0.0458	[0.035-0.057] unit increase	Affymetrix [9000000] (imputed)	N
1688	chr4	144649426	144649427	rs115229121	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	4q31.21	NR	rs115229121-T	NR	2E-9		0.0493	[0.033-0.065] unit increase	Affymetrix [9000000] (imputed)	N
1688	chr4	144654315	144654319	rs66528032	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	4q31.21	RP13-578N3.3	rs66528032-T	0.6666	1E-12		0.02722434	[0.02-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
1688	chr4	144659794	144659795	rs13134327	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	4q31.21	FREM3	rs13134327-A	0.3296	3E-26		0.0144	[0.012-0.017] unit increase	Affymetrix, Illumina [33811881] (imputed)	N
1688	chr4	144659794	144659795	rs13134327	28898252	Wheeler E	2017-09-12	PLoS Med	Impact of common genetic determinants of Hemoglobin A1c on type 2 diabetes risk and diagnosis in ancestrally diverse populations: A transethnic genome-wide meta-analysis.	Glycated hemoglobin levels	88,355 European ancestry individuals	NA	4q31.21	FREM3	rs13134327-A	0.3335	3E-15		0.0131	[0.0098-0.0164] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1688	chr4	144674985	144674986	rs151025055	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	4q31.21	NR	rs151025055-T	0.12	1E-9		1.15	[1.1-1.21]	Affymetrix [9886854] (imputed)	N
1688	chr4	144674985	144674986	rs151025055	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	4q31.21	NR	rs151025055-T	0.12	1E-9			[NR]	Affymetrix [9886854] (imputed)	N
1688	chr4	144674985	144674986	rs151025055	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in never smokers	8,631 European ancestry cases, 120,544 European ancestry controls	NA	4q31.21	NR	rs151025055-T	0.12	1E-9		1.16	[1.1-1.21]	Affymetrix [9886854] (imputed)	N
1688	chr4	144679565	144679566	rs79829566	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	4q31.21	NR	rs79829566-C	NR	5E-10		0.0348	[0.024-0.046] unit increase	Affymetrix [9000000] (imputed)	N
1688	chr4	144702473	144702474	rs186873296	26416757	Band G	2015-09-30	Nature	A novel locus of resistance to severe malaria in a region of ancient balancing selection.	Severe malaria	5,130 African ancestry cases, 5,291 African ancestry controls	5,535 African ancestry cases, 9,948 African ancestry controls	4q31.21	FREM3, GYPE, GYPA, GYPB	rs186873296-?	NR	1E-10		1.49	[1.32-1.67]	Illumina [~ 38000000] (imputed)	N
1688	chr4	144702473	144702474	rs186873296	26416757	Band G	2015-09-30	Nature	A novel locus of resistance to severe malaria in a region of ancient balancing selection.	Severe malaria	5,130 African ancestry cases, 5,291 African ancestry controls	5,535 African ancestry cases, 9,948 African ancestry controls	4q31.21	FREM3, GYPA, GYPE, GYPB	rs186873296-?	NR	4E-11	(East African)			Illumina [~ 38000000] (imputed)	N
1689	chr4	144742629	144742630	rs79154436	33483693	Clements CC	2021-01-22	Mol Psychiatry	Genome-wide association study of patients with a severe major depressive episode treated with electroconvulsive therapy.	Major depressive episode treated with electroconvulsive therapy	2,725 European ancestry cases, 3,290 European ancestry controls	NA	4q31.21	NR	rs79154436-?	NR	8E-6		0.5571	[0.3-0.81]	Illumina [NR] (imputed)	N
1689	chr4	144798600	144798601	rs11727524	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	4q31.21	NR	rs11727524-C	0.12	6E-10		1.11	[1.08-1.15]	Affymetrix [9886854] (imputed)	N
1689	chr4	144798600	144798601	rs11727524	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	4q31.21	NR	rs11727524-C	0.12	4E-9			[NR]	Affymetrix [9886854] (imputed)	N
1689	chr4	144798600	144798601	rs11727524	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in non-current smokers	16,488 European ancestry cases, 169,688 European ancestry controls	NA	4q31.21	NR	rs11727524-C	0.12	5E-10		1.11	[1.08-1.15]	Affymetrix [9886854] (imputed)	N
1689	chr4	144827949	144827950	rs778116904	33961016	Moksnes MR	2021-05-07	Hum Mol Genet	Genome-wide association study of cardiac troponin I in the general population.	Change in high-sensitivity cardiac troponin I concentration	5,178 European ancestry individuals	NA	4q31.21		rs778116904-A	0.001	2E-7		1.67	[1.04-2.3] unit increase	Illumina [21233433] (imputed)	N
1689	chr4	144833152	144833153	rs74590858	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein POMGNT2	5,366 Icelandic ancestry individuals	NA	4q31.21		rs74590858-G	0.2736	1E-31		0.244006	[0.2-0.28] unit decrease	Illumina [7506463] (imputed)	N
1690	chr4	144842637	144842638	rs1822841	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q31.21	NR	rs1822841-T	0.696767	3E-42				Affymetrix, Illumina [22063850] (imputed)	N
1690	chr4	144842637	144842638	rs1822841	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	4q31.21	NR	rs1822841-T	0.690949	4E-45		0.029151	[0.025-0.033] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
1690	chr4	144859477	144859478	rs13130548	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	4q31.21	RP11-673E1.1	rs13130548-T	0.681715	3E-55		0.039693903	[0.035-0.045] unit increase	Affymetrix [93095623] (imputed)	N
1690	chr4	144866681	144866682	rs187768945	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	4q31.21	NR	rs187768945-C	0.997708	4E-9		0.0534203	[0.035-0.072] unit increase	Affymetrix [16582909] (imputed)	N
1690	chr4	144866681	144866682	rs187768945	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	4q31.21	NR	rs187768945-C	0.997708	2E-7		0.0531493	[0.033-0.074] unit increase	Affymetrix [16582965] (imputed)	N
1690	chr4	144881839	144881840	rs4835097	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	4q31.21	RP11-673E1.1	rs4835097-G	0.714	8E-23	(Protein O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2, POMGNT2.6359.50.3)	0.27	[0.21-0.33] unit increase	Affymetrix [10572788] (imputed)	N
1690	chr4	144885137	144885138	rs28504375	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	4q31.21		rs28504375-A	NR	8E-100		0.053	[0.048-0.058] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
1690	chr4	144885824	144885825	rs12648849	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	4q31.21	RP11-673E1.1, RP11-673E1.4	rs12648849-T	0.644344	1E-17		0.021389987	[0.017-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1690	chr4	144896335	144896336	rs60428870	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	4q31.21	RP11-673E1.1, RP11-673E1.4	rs60428870-A	0.616006	6E-10		0.015018989	[0.01-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1690	chr4	144901167	144901168	rs6827598	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	4q31.21	RP11-673E1.1, RP11-673E1.4	rs6827598-G	0.682781	5E-81		0.046430364	[0.042-0.051] unit increase	Affymetrix [93095623] (imputed)	N
1690	chr4	144903571	144903572	rs4835473	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	4q31.21	RP11-673E1.1	rs4835473-T	0.6899	1E-41		0.05190101	[0.044-0.059] unit increase	Affymetrix [~ 2500000] (imputed)	N
1690	chr4	144905443	144905444	rs11724009	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	4q31.21	RP11-673E1.4	rs11724009-A	0.691359	6E-143		0.061756708	[0.057-0.067] unit increase	Affymetrix [93095623] (imputed)	N
1690	chr4	144910615	144910616	rs13101482	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	4q31.21	RP11-673E1.4	rs13101482-A	0.6882	1E-46		0.05585973	[0.048-0.063] unit increase	Affymetrix [~ 2500000] (imputed)	N
1690	chr4	144910615	144910616	rs13101482	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	4q31.21	RP11-673E1.4	rs13101482-A	0.6882	9E-43		0.05342972	[0.046-0.061] unit increase	Affymetrix [~ 2500000] (imputed)	N
1690	chr4	144913258	144913259	rs4323050	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	4q31.21	RP11-673E1.4	rs4323050-C	0.6911	1E-59		0.06314941	[0.056-0.071] unit increase	Affymetrix [~ 2500000] (imputed)	N
1690	chr4	144917942	144917942	rs11383739	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	4q31.21	GYPB, RP11-673E1.4	rs11383739-AG	0.691254	1E-84		0.0515657	[0.046-0.057] unit increase	Affymetrix [93095623] (imputed)	N
1690	chr4	144917942	144917942	rs11383739	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	4q31.21	GYPB, RP11-673E1.4	rs11383739-AG	0.691255	3E-109		0.05467444	[0.05-0.059] unit increase	Affymetrix [93095623] (imputed)	N
1690	chr4	144917942	144917942	rs11383739	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	4q31.21	GYPB, RP11-673E1.4	rs11383739-AG	0.691301	2E-136		0.060925875	[0.056-0.066] unit increase	Affymetrix [93095623] (imputed)	N
1690	chr4	144920157	144920158	rs7666297	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	4q31.21		rs7666297-?	NR	4E-33				NR [~ 8900000] (imputed)	N
1690	chr4	144938729	144938730	rs9308174	28203683	Heit JA	2017-02-16	Thromb Haemost	Identification of unique venous thromboembolism-susceptibility variants in African-Americans.	Venous thromboembolism adjusted for sickle cell variant rs77121243-T	393 African American cases, 4,941 African American controls.	NR	4q31.21	GYPB	rs9308174-?	0.5	8E-6		1.4388489		Affymetrix, Illumina [14074516] (imputed)	N
1690	chr4	144950785	144950786	rs115339319	31123309	Rayner C	2019-05-23	Transl Psychiatry	A genome-wide association meta-analysis of prognostic outcomes following cognitive behavioural therapy in individuals with anxiety and depressive disorders.	Response to cognitive-behavioural therapy in anxiety disorder	920 child cases	NA	4q31.21	GYPA, GYPB, GYPE	rs115339319-C	0.14	7E-6		0.57	[0.32-0.82] unit decrease	Illumina [at least 4710000] (imputed)	N
1691	chr4	144971028	144971029	rs113900142	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	4q31.21	GYPB, RP11-673E1.4	rs113900142-C	0.032378	4E-10		0.041027203	[0.028-0.054] unit increase	Affymetrix [93095623] (imputed)	N
1691	chr4	145007169	145007170	rs11725921	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	4q31.21		rs11725921-?	NR	2E-17				NR [~ 8900000] (imputed)	N
1691	chr4	145009801	145009802	rs7657795	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	4q31.21	NR	rs7657795-C	NR	4E-33		0.0314	[0.026-0.036] unit increase	Affymetrix [9000000] (imputed)	N
1691	chr4	145024532	145024533	rs76475845	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	4q31.21	NR	rs76475845-G	NR	1E-25		0.1057	[0.086-0.125] unit decrease	Affymetrix [9000000] (imputed)	N
1691	chr4	145024798	145024799	rs6844670	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	4q31.21	NR	rs6844670-G	NR	3E-77		0.0476	[0.043-0.053] unit increase	Affymetrix [9000000] (imputed)	N
1691	chr4	145025809	145025810	rs11723371	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	4q31.21		rs11723371-C	NR	3E-21		0.0165	[0.013-0.02] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
1691	chr4	145025809	145025810	rs11723371	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	4q31.21		rs11723371-T	0.527	4E-26		0.12	[-0.14--0.1] % decrease	Affymetrix [NR] (imputed)	N
1691	chr4	145025809	145025810	rs11723371	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	4q31.21	GYPB, RP11-673E1.4	rs11723371-C	0.472506	1E-12		0.015846817	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1691	chr4	145025809	145025810	rs11723371	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	4q31.21	GYPB, RP11-673E1.4	rs11723371-C	0.472523	2E-31		0.0261198	[0.022-0.03] unit increase	Affymetrix [93095623] (imputed)	N
1691	chr4	145025809	145025810	rs11723371	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	4q31.21	GYPB, RP11-673E1.4	rs11723371-C	0.472543	4E-25		0.023617504	[0.019-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1691	chr4	145025809	145025810	rs11723371	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	4q31.21	NR	rs11723371-C	0.47109	3E-41		0.024852	[0.021-0.028] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
1691	chr4	145025809	145025810	rs11723371	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	4q31.21		rs11723371-?	NR	2E-15				NR [~ 8900000] (imputed)	N
1691	chr4	145026049	145026050	rs6857262	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q31.21	NR	rs6857262-G	0.447265	4E-20				Affymetrix, Illumina [24332387] (imputed)	N
1691	chr4	145026125	145026126	rs11735662	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	4q31.21		rs11735662-T	NR	6E-11		0.0427	[0.03-0.055] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
1691	chr4	145026125	145026126	rs11735662	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	4q31.21		rs11735662-T	NR	9E-12		0.0443	[0.032-0.057] unit increase	Affymetrix, Illumina [20536605] (imputed)	N
1691	chr4	145026125	145026126	rs11735662	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	4q31.21	GYPB, RP11-673E1.4	rs11735662-T	0.034165	2E-13		0.045676455	[0.034-0.058] unit increase	Affymetrix [93095623] (imputed)	N
1691	chr4	145026125	145026126	rs11735662	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	4q31.21	GYPB, RP11-673E1.4	rs11735662-T	0.034204	3E-29		0.07037478	[0.058-0.083] unit increase	Affymetrix [93095623] (imputed)	N
1691	chr4	145026125	145026126	rs11735662	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	4q31.21	GYPB, RP11-673E1.4	rs11735662-T	0.034202	4E-30		0.070657745	[0.059-0.083] unit increase	Affymetrix [93095623] (imputed)	N
1691	chr4	145026125	145026126	rs11735662	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	4q31.21	GYPB, RP11-673E1.4	rs11735662-T	0.034137	3E-10		0.039955996	[0.028-0.052] unit increase	Affymetrix [93095623] (imputed)	N
1691	chr4	145026125	145026126	rs11735662	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	4q31.21	GYPB, RP11-673E1.4	rs11735662-T	0.0341900000000001	3E-16		0.04957049	[0.038-0.061] unit increase	Affymetrix [93095623] (imputed)	N
1691	chr4	145026125	145026126	rs11735662	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	4q31.21	GYPB, RP11-673E1.4	rs11735662-T	0.0342130000000001	7E-23		0.06038574	[0.048-0.072] unit decrease	Affymetrix [93095623] (imputed)	N
1691	chr4	145026125	145026126	rs11735662	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	4q31.21	GYPB, RP11-673E1.4	rs11735662-T	0.03421	7E-47		0.08944171	[0.077-0.102] unit decrease	Affymetrix [93095623] (imputed)	N
1691	chr4	145026125	145026126	rs11735662	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	4q31.21	GYPB, RP11-673E1.4	rs11735662-T	0.034152	5E-28		0.0649355	[0.053-0.077] unit increase	Affymetrix [93095623] (imputed)	N
1691	chr4	145026125	145026126	rs11735662	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	4q31.21	GYPB, RP11-673E1.4	rs11735662-T	0.034153	2E-12		0.04354468	[0.031-0.056] unit increase	Affymetrix [93095623] (imputed)	N
1691	chr4	145026125	145026126	rs11735662	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	4q31.21	GYPB, RP11-673E1.4	rs11735662-T	0.0341939999999999	1E-22		0.060211588	[0.048-0.072] unit increase	Affymetrix [93095623] (imputed)	N
1691	chr4	145026125	145026126	rs11735662	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	4q31.21	GYPB, RP11-673E1.4	rs11735662-T	0.0341939999999999	4E-20		0.056573354	[0.044-0.069] unit increase	Affymetrix [93095623] (imputed)	N
1691	chr4	145026125	145026126	rs11735662	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	4q31.21	NR	rs11735662-T	0.033197	5E-24		0.052247	[0.042-0.062] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
1691	chr4	145026125	145026126	rs11735662	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q31.21	NR	rs11735662-T	0.032234	8E-18				Affymetrix, Illumina [23114412] (imputed)	N
1691	chr4	145026125	145026126	rs11735662	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	4q31.21	NR	rs11735662-T	0.033581	6E-19		0.047562	[0.037-0.058] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
1691	chr4	145026125	145026126	rs11735662	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q31.21	NR	rs11735662-T	0.0322694	1E-35				Affymetrix, Illumina [21126107] (imputed)	N
1691	chr4	145026125	145026126	rs11735662	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	4q31.21	NR	rs11735662-T	0.033524	2E-39		0.07353	[0.063-0.084] SD unit increase	Affymetrix, Illumina [50282193] (imputed)	N
1691	chr4	145026125	145026126	rs11735662	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	4q31.21		rs11735662-?	NR	4E-14				NR [~ 8900000] (imputed)	N
1691	chr4	145026125	145026126	rs11735662	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	4q31.21	RP11-673E1.4, GYPB	rs11735662-T	0.0344	1E-19		0.08937307	[0.07-0.109] unit increase	Affymetrix [~ 2500000] (imputed)	N
1691	chr4	145026125	145026126	rs11735662	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	4q31.21	RP11-673E1.4, GYPB	rs11735662-T	0.0344	1E-16		0.08150946	[0.062-0.101] unit increase	Affymetrix [~ 2500000] (imputed)	N
1691	chr4	145026125	145026126	rs11735662	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin concentration	172,851 European ancestry individuals	NA	4q31.21	RP11-673E1.4, GYPB	rs11735662-T	0.0344	2E-18		0.08339886	[0.065-0.102] unit increase	Affymetrix [~ 2500000] (imputed)	N
1691	chr4	145030545	145030546	rs1132787	33430853	Ustinova M	2021-01-11	BMC Med Genomics	Novel susceptibility loci identified in a genome-wide association study of type 2 diabetes complications in population of Latvia.	Diabetic neuropathy in type 2 diabetes	218 European ancestry cases, 382 European ancestry controls	NA	4q31.21	GYPA	rs1132787-T	0.16	3E-11		2.71	[2.02-3.64]	Illumina [5378539] (imputed)	N
1691	chr4	145033642	145033643	rs11100830	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	4q31.21		rs11100830-G	NR	2E-28		0.0222	[0.018-0.026] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
1691	chr4	145033642	145033643	rs11100830	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	4q31.21		rs11100830-G	NR	6E-27		0.0216	[0.018-0.026] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
1691	chr4	145033642	145033643	rs11100830	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q31.21	NR	rs11100830-G	0.440173	3E-43				Affymetrix, Illumina [24246363] (imputed)	N
1691	chr4	145033642	145033643	rs11100830	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q31.21	NR	rs11100830-G	0.440461	2E-43				Affymetrix, Illumina [20825802] (imputed)	N
1691	chr4	145033642	145033643	rs11100830	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	4q31.21	GYPA, GYPB, RP11-673E1.4	rs11100830-G	0.4557	2E-12		0.0263011	[0.019-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
1691	chr4	145035787	145035788	rs6857303	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	4q31.21		rs6857303-A	NR	6E-15		0.0154	[0.011-0.019] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
1691	chr4	145035787	145035788	rs6857303	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q31.21	NR	rs6857303-A	0.443277	2E-24				Affymetrix, Illumina [24588908] (imputed)	N
1691	chr4	145035787	145035788	rs6857303	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	4q31.21	NR	rs6857303-A	0.454572	6E-24		0.018693	[0.015-0.022] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1691	chr4	145035787	145035788	rs6857303	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	4q31.21	NR	rs6857303-A	0.45454	2E-42		0.026599	[0.023-0.03] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
1691	chr4	145035787	145035788	rs6857303	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	4q31.21		rs6857303-?	NR	1E-33				NR [~ 8900000] (imputed)	N
1691	chr4	145035787	145035788	rs6857303	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	4q31.21	GYPA, GYPB, RP11-673E1.4	rs6857303-A	0.4555	1E-12		0.02548718	[0.018-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
1691	chr4	145035787	145035788	rs6857303	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	4q31.21	GYPA, GYPB, RP11-673E1.4	rs6857303-A	0.4555	6E-13		0.02599851	[0.019-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
1691	chr4	145035850	145035851	rs149908820	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean reticulocyte volume	436,944 European ancestry individuals	NA	4q31.21		rs149908820-?	NR	3E-23		0.152532	[0.12-0.18] unit decrease	NR [9800000] (imputed)	N
1691	chr4	145035850	145035851	rs149908820	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	4q31.21	GYPA	rs149908820-T	0.00444900000000004	1E-24		0.17141835	[0.14-0.2] unit decrease	Affymetrix [93095623] (imputed)	N
1691	chr4	145035850	145035851	rs149908820	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	4q31.21	GYPA	rs149908820-T	0.00443499999999997	6E-25		0.17435141	[0.14-0.21] unit decrease	Affymetrix [93095623] (imputed)	N
1691	chr4	145038626	145038627	rs6537255	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	4q31.21	GYPA, GYPB, RP11-673E1.4	rs6537255-C	0.458466	4E-16		0.019032434	[0.014-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1691	chr4	145038626	145038627	rs6537255	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	4q31.21	GYPA, GYPB, RP11-673E1.4	rs6537255-C	0.458477	2E-11		0.01550916	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1691	chr4	145038626	145038627	rs6537255	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q31.21	NR	rs6537255-C	0.449815	4E-10				Affymetrix, Illumina [23472807] (imputed)	N
1691	chr4	145040218	145040219	rs12505498	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	4q31.21		rs12505498-T	NR	7E-12		0.0132	[0.0095-0.0169] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1691	chr4	145040218	145040219	rs12505498	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	4q31.21		rs12505498-C	0.545	1E-13				Affymetrix [10369434] (imputed)	N
1691	chr4	145040218	145040219	rs12505498	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	4q31.21	GYPA, GYPB, RP11-673E1.4	rs12505498-T	0.454891	1E-10		0.014666991	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
1691	chr4	145040998	145040999	rs62334652	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	4q31.21	RP11-673E1.4, GYPB, GYPA	rs62334652-C	NR	8E-9		0.0178853	[0.012-0.024] unit decrease	Affymetrix [323123] (imputed)	N
1691	chr4	145041576	145041577	rs111643702	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	4q31.21	NR	rs111643702-T	NR	6E-22		0.041	[0.033-0.049] unit increase	Affymetrix [9000000] (imputed)	N
1691	chr4	145042249	145042250	rs4240356	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	4q31.21		rs4240356-G	NR	3E-8		0.0118	[0.0077-0.0159] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
1691	chr4	145042249	145042250	rs4240356	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q31.21	NR	rs4240356-G	0.552163	2E-33				Affymetrix, Illumina [23467995] (imputed)	N
1691	chr4	145042249	145042250	rs4240356	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	4q31.21	NR	rs4240356-G	0.55045	2E-35		0.023514	[0.02-0.027] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1691	chr4	145042249	145042250	rs4240356	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Red blood cell count	108,794 Japanese ancestry individuals	NA	4q31.21	GYPA	rs4240356-?	NR	1E-8		0.02522	[0.017-0.034] unit increase novel	Illumina [6108953] (imputed)	N
1691	chr4	145042519	145042520	rs7693383	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	153,512 East Asian ancestry individuals	NA	4q31.21		rs7693383-C	0.427764	1E-10		0.020902	[0.015-0.027] unit decrease	Illumina [13479135] (imputed)	N
1691	chr4	145044758	145044759	rs4565031	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	4q31.21	GYPA, GYPB, RP11-673E1.4	rs4565031-G	0.449968	2E-21		0.021441285	[0.017-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1691	chr4	145045680	145045681	rs4491970	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	4q31.21		rs4491970-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1691	chr4	145053197	145053198	rs7696658	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	4q31.21	GYPA, GYPB	rs7696658-T	0.4772	4E-9		0.02147079	[0.014-0.029] unit increase	Affymetrix [~ 2500000] (imputed)	N
1691	chr4	145054706	145054707	rs11100814	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q31.21	NR	rs11100814-T	0.432863	3E-24				Affymetrix, Illumina [24649327] (imputed)	N
1691	chr4	145055059	145055059	rs577236702	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	4q31.21	GYPA, GYPB	rs577236702-AT	0.022871	5E-12		0.052792445	[0.038-0.068] unit increase	Affymetrix [93095623] (imputed)	N
1691	chr4	145056486	145056487	rs13103731	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	4q31.21		rs13103731-T	NR	6E-18		0.0201	[0.016-0.025] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
1691	chr4	145058295	145058296	rs11723763	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	4q31.21	GYPA, GYPB	rs11723763-T	0.4493	1E-12		0.02552626	[0.018-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
1691	chr4	145062270	145062271	rs36211745	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	4q31.21	NR	rs36211745-C	NR	2E-65		0.0417	[0.037-0.046] unit increase	Affymetrix [9000000] (imputed)	N
1691	chr4	145066950	145066951	rs4336173	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	4q31.21		rs4336173-A	0.404226	3E-40		0.033126768	[0.028-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
1691	chr4	145083341	145083342	rs7667722	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	4q31.21	NR	rs7667722-A	NR	2E-9		0.0156	[0.011-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
1691	chr4	145083341	145083342	rs7667722	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	4q31.21	NR	rs7667722-A	0.504486	2E-9		0.01472823	[0.0099-0.0195] unit decrease	Affymetrix [93095623] (imputed)	N
1691	chr4	145087687	145087687	rs35322263	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	4q31.21		rs35322263-CAA	NR	6E-9		0.0137	[0.0092-0.0182] unit increase	Affymetrix, Illumina [20535842] (imputed)	N
1691	chr4	145087687	145087687	rs35322263	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	4q31.21	GYPA	rs35322263-CAA	NR	2E-8		0.0174853	[0.011-0.024] unit increase	Affymetrix [323123] (imputed)	N
1691	chr4	145089864	145089865	rs34257361	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	4q31.21	intergenic	rs34257361-A	0.4739	1E-10		0.02358875	[0.016-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1691	chr4	145089864	145089865	rs34257361	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	4q31.21	intergenic	rs34257361-A	0.4739	3E-9		0.02182316	[0.015-0.029] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1692	chr4	145132928	145132929	rs72940011	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	4q31.21	NR	rs72940011-?	NR	7E-6		1.5159	[0.73-2.3] unit increase	Illumina [at least 560000] (imputed)	N
1692	chr4	145134216	145134217	rs4345121	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	4q31.21		rs4345121-?	NR	6E-22				NR [~ 8900000] (imputed)	N
1692	chr4	145138685	145138686	rs142209628	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	4q31.21		rs142209628-?	NR	1E-11				NR [~ 8900000] (imputed)	N
1692	chr4	145145339	145145340	rs34136325	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Recurrent major depressive disorder x sex interaction	5,314 European ancestry cases, 10,149 European ancestry controls	NA	4q31.21	GYPA, HHIP-AS1	rs34136325-A	0.4007	2E-6		0.182	[0.11-0.26] unit decrease	NR [NR] (imputed)	N
1692	chr4	145193647	145193648	rs11736774	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	4q31.21	GYPA	rs11736774-C	NR	2E-8		0.0174241	[0.011-0.023] unit increase	Affymetrix [323123] (imputed)	N
1692	chr4	145195648	145195649	rs7689179	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	4q31.21	NR	rs7689179-G	NR	1E-11		0.0166	[0.012-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
1692	chr4	145196205	145196206	rs7690204	24322204	Winham SJ	2013-12-10	Mol Psychiatry	Genome-wide association study of bipolar disorder accounting for effect of body mass index identifies a new risk allele in TCF7L2.	Bipolar disorder (body mass index interaction)	388 European ancestry cases, 1,020 European ancestry controls	NA	4q31.21	GYPA	rs7690204-?	NR	5E-6				NR [up to 8466825] (imputed)	N
1692	chr4	145197437	145197438	rs4334701	30395268	Khanshour AM	2018-11-01	Hum Mol Genet	Genome-wide meta-analysis and replication studies in multiple ethnicities identify novel adolescent idiopathic scoliosis susceptibility loci.	Adolescent idiopathic scoliosis	2,295 East Asian ancestry cases, 11,084 East Asian ancestry controls, 1,503 European ancestry cases, 18,594 European ancestry controls	2,737 East Asian ancestry cases, 56,815 East Asian ancestry controls, 1,421 European ancestry cases, 1,966 European ancestry controls	4q31.21	HHIP, GYP	rs4334701-?		2E-7		1.11	[1.06-1.15]	Affymetrix, Illumina [3493832] (imputed)	N
1692	chr4	145222283	145222284	rs77909720	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	4q31.21	NR	rs77909720-T	NR	4E-13		0.0442	[0.032-0.056] unit decrease	Affymetrix [9000000] (imputed)	N
1692	chr4	145222283	145222284	rs77909720	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	4q31.21		rs77909720-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1692	chr4	145227599	145227600	rs13118083	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs13118083-A	0.438	2E-6		0.009	unit decrease	Illumina [NR] (imputed)	N
1693	chr4	145229709	145229710	rs13106167	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs13106167-T	0.432	8E-8		0.01	unit increase	Illumina [NR] (imputed)	N
1693	chr4	145229709	145229710	rs13106167	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs13106167-T	0.437	7E-7		0.047	NR unit increase	Illumina [NR] (imputed)	N
1693	chr4	145233940	145233941	rs10000225	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs10000225-A	0.35	3E-6		0.044	NR unit decrease	Illumina [NR] (imputed)	N
1693	chr4	145234514	145234515	rs6828489	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs6828489-T	0.362	1E-6		0.045	NR unit decrease	Illumina [NR] (imputed)	N
1693	chr4	145235326	145235327	rs12640654	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	4q31.21	GYPA	rs12640654-G	NR	1E-9		0.0204751	[0.014-0.027] unit decrease	Affymetrix [321016] (imputed)	N
1693	chr4	145235655	145235656	rs12640763	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs12640763-T	0.638	1E-6		0.045	NR unit increase	Illumina [NR] (imputed)	N
1693	chr4	145236236	145236237	rs6854014	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs6854014-A	0.621	3E-6		0.044	NR unit increase	Illumina [NR] (imputed)	N
1693	chr4	145236425	145236426	rs4256190	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs4256190-A	0.62	3E-6		0.043	NR unit increase	Illumina [NR] (imputed)	N
1693	chr4	145238984	145238985	rs1505771	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs1505771-T	0.347	2E-6		0.044	NR unit decrease	Illumina [NR] (imputed)	N
1693	chr4	145240005	145240006	rs190945295	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	4q31.21		rs190945295-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1693	chr4	145240151	145240152	rs4321584	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs4321584-A	0.646	2E-6		0.044	NR unit increase	Illumina [NR] (imputed)	N
1693	chr4	145242661	145242662	rs6537275	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs6537275-A	0.618	4E-6		0.042	NR unit increase	Illumina [NR] (imputed)	N
1693	chr4	145249274	145249275	rs12512788	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs12512788-A	0.566	6E-8		0.01	unit decrease	Illumina [NR] (imputed)	N
1693	chr4	145249274	145249275	rs12512788	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs12512788-A	0.564	6E-7		0.047	NR unit decrease	Illumina [NR] (imputed)	N
1693	chr4	145250267	145250268	rs78973041	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	4q31.21		rs78973041-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1693	chr4	145250389	145250390	rs7655235	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	4q31.21	NR	rs7655235-G	0.711855	2E-10		0.048459	[0.034-0.063] unit increase	Affymetrix [17914406] (imputed)	N
1693	chr4	145250389	145250390	rs7655235	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs7655235-A	0.453	2E-6		0.044	NR unit decrease	Illumina [NR] (imputed)	N
1693	chr4	145252339	145252339	rs11410434	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	4q31.21	RP11-361D14.2	rs11410434-T	NR	1E-9		0.0205913	[0.014-0.027] unit increase	Affymetrix [321114] (imputed)	N
1693	chr4	145252762	145252763	rs72731504	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	4q31.21	RP11-361D14.2	rs72731504-T	NR	4E-10		0.044203	[0.03-0.058] unit decrease	Affymetrix [321016] (imputed)	N
1693	chr4	145254684	145254685	rs7377575	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs7377575-T	0.654	1E-6		0.044	NR unit decrease	Illumina [NR] (imputed)	N
1693	chr4	145257680	145257681	rs2202507	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs2202507-T	0.562	5E-8		0.01	unit decrease	Illumina [NR] (imputed)	N
1693	chr4	145257680	145257681	rs2202507	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs2202507-T	0.559	4E-7		0.048	NR unit decrease	Illumina [NR] (imputed)	N
1693	chr4	145257938	145257939	rs6537278	25189868	Sung YJ	2014-09-03	Am J Hypertens	Gene-smoking interactions identify several novel blood pressure loci in the Framingham Heart Study.	Blood pressure (smoking interaction)	Up to 6,889 individuals	NA	4q31.21	GYPA, KRT18P51	rs6537278-?	NR	7E-7	(SBP,Pack-years)			Affymetrix [2485435] (imputed)	N
1693	chr4	145258753	145258754	rs9995482	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs9995482-A	0.639	3E-6		0.043	NR unit increase	Illumina [NR] (imputed)	N
1693	chr4	145259125	145259126	rs13118748	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs13118748-A	0.614	2E-6		0.044	NR unit increase	Illumina [NR] (imputed)	N
1693	chr4	145260494	145260495	rs7661046	33766948	Zhu Z	2021-03-25	Eur Respir J	A large-scale genome-wide association analysis of lung function in the Chinese population identifies novel loci and highlights shared genetic etiology with obesity.	Lung function (FEV1)	100,285 Chinese ancestry individuals	NA	4q31.21		rs7661046-G	0.35	9E-10		0.028	L decrease	Affymetrix [NR] (imputed)	N
1693	chr4	145260494	145260495	rs7661046	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs7661046-T	0.662	4E-6		0.009	unit increase	Illumina [NR] (imputed)	N
1693	chr4	145260494	145260495	rs7661046	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs7661046-T	0.663	3E-7		0.047	NR unit increase	Illumina [NR] (imputed)	N
1693	chr4	145262926	145262927	rs13105210	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs13105210-T	0.278	1E-12		0.015	unit increase	Illumina [NR] (imputed)	N
1693	chr4	145262926	145262927	rs13105210	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs13105210-T	0.281	3E-9		0.061	NR unit increase	Illumina [NR] (imputed)	N
1693	chr4	145262926	145262927	rs13105210	25101718	Lee JH	2015-03-01	Am J Respir Cell Mol Biol	IREB2 and GALC are associated with pulmonary artery enlargement in chronic obstructive pulmonary disease.	Chronic obstructive pulmonary disease	3,281 European ancestry cases, 494 African American cases, 2,712 European ancestry smoker controls, 1,749 African American smoker controls	NA	4q31.21	GYPA	rs13105210-C	0.69	9E-8		1.27	[1.17-1.39]	Illumina [NR] (imputed)	N
1693	chr4	145263755	145263756	rs6822064	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs6822064-T	0.32	4E-6		0.009	unit decrease	Illumina [NR] (imputed)	N
1693	chr4	145263755	145263756	rs6822064	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs6822064-T	0.318	1E-7		0.049	NR unit decrease	Illumina [NR] (imputed)	N
1693	chr4	145264013	145264014	rs6840871	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs6840871-T	0.315	1E-7		0.049	NR unit increase	Illumina [NR] (imputed)	N
1693	chr4	145264889	145264890	rs2352767	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	4q31.21	NR	rs2352767-?	NR	2E-12				Affymetrix [~ 8270000] (imputed)	N
1693	chr4	145267633	145267634	rs4493485	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs4493485-T	0.315	1E-7		0.049	NR unit decrease	Illumina [NR] (imputed)	N
1693	chr4	145267779	145267780	rs4266245	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs4266245-A	0.315	1E-7		0.049	NR unit decrease	Illumina [NR] (imputed)	N
1693	chr4	145270063	145270064	rs17709487	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs17709487-T	0.273	2E-11		0.014	unit increase	Illumina [NR] (imputed)	N
1693	chr4	145270063	145270064	rs17709487	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs17709487-T	0.276	1E-8		0.058	NR unit increase	Illumina [NR] (imputed)	N
1693	chr4	145270866	145270867	rs987246	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs987246-T	0.685	1E-7		0.049	NR unit increase	Illumina [NR] (imputed)	N
1693	chr4	145270954	145270955	rs6834183	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs6834183-T	0.727	2E-11		0.014	unit decrease	Illumina [NR] (imputed)	N
1693	chr4	145270954	145270955	rs6834183	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs6834183-T	0.724	1E-8		0.058	NR unit decrease	Illumina [NR] (imputed)	N
1693	chr4	145271070	145271071	rs4340757	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs4340757-C	0.315	1E-7		0.049	NR unit decrease	Illumina [NR] (imputed)	N
1693	chr4	145271953	145271954	rs4292285	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	4q31.21	GYPA, HHIP-AS1	rs4292285-T		5E-6		0.25	unit increase	Affymetrix [at least 2696785] (imputed)	N
1693	chr4	145271953	145271954	rs4292285	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	4q31.21	GYPA, HHIP-AS1	rs4292285-T		3E-9		0.23	unit increase	Affymetrix [at least 2696785] (imputed)	N
1693	chr4	145271953	145271954	rs4292285	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	4q31.21	GYPA, HHIP-AS1	rs4292285-T		1E-6		0.173	unit increase	Affymetrix [at least 2696785] (imputed)	N
1693	chr4	145271953	145271954	rs4292285	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	4q31.21	GYPA, HHIP-AS1	rs4292285-T		7E-11		0.154	unit increase	Affymetrix [at least 2696785] (imputed)	N
1693	chr4	145272118	145272119	rs34991888	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs34991888-T	0.273	2E-11		0.014	unit increase	Illumina [NR] (imputed)	N
1693	chr4	145272118	145272119	rs34991888	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs34991888-T	0.276	1E-8		0.058	NR unit increase	Illumina [NR] (imputed)	N
1693	chr4	145272691	145272692	rs17766168	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs17766168-A	0.273	7E-11		0.014	unit increase	Illumina [NR] (imputed)	N
1693	chr4	145272691	145272692	rs17766168	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs17766168-A	0.275	3E-8		0.056	NR unit increase	Illumina [NR] (imputed)	N
1693	chr4	145272907	145272907	rs33914677	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	4q31.21	RP11-361D14.2	rs33914677-C	NR	5E-9		0.0204044	[0.014-0.027] unit increase	Affymetrix [127266] (imputed)	N
1693	chr4	145273927	145273928	rs4835177	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs4835177-A	0.581	3E-12		0.015	unit decrease	Illumina [NR] (imputed)	N
1693	chr4	145273927	145273928	rs4835177	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs4835177-A	0.581	4E-9		0.061	NR unit decrease	Illumina [NR] (imputed)	N
1693	chr4	145275038	145275039	rs6537279	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	4q31.21	ATP6V1E2, RHOQ, PIGF, CRIPT	rs6537279-?		4E-12				NR [7428630] (imputed)	N
1693	chr4	145275038	145275039	rs6537279	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	4q31.21	GYPA	rs6537279-A	0.21	6E-26	(conditional on rs13140176)	1.13	[NR]	Affymetrix, Illumina [6224355] (imputed)	N
1693	chr4	145275038	145275039	rs6537279	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs6537279-A	0.797	4E-6		0.011	unit decrease	Illumina [NR] (imputed)	N
1693	chr4	145278115	145278115	rs536467699	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	4q31.21	RP11-361D14.2	rs536467699-GA	NR	4E-12		0.0199699	[0.014-0.026] unit decrease	Affymetrix [321016] (imputed)	N
1693	chr4	145278526	145278526	rs5862699	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	4q31.21		rs5862699-AT	NR	3E-10		0.0121	[0.0084-0.0158] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1693	chr4	145278754	145278755	rs1505772	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	4q31.21	RP11-361D14.2	rs1505772-G	NR	8E-31		0.0493016	[0.041-0.058] unit decrease	Affymetrix [321016] (imputed)	N
1693	chr4	145278754	145278755	rs1505772	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	4q31.21	RP11-361D14.2	rs1505772-G	NR	8E-12		0.0316614	[0.023-0.041] unit decrease	Affymetrix [323123] (imputed)	N
1693	chr4	145278836	145278837	rs17766287	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs17766287-T	0.273	2E-11		0.014	unit decrease	Illumina [NR] (imputed)	N
1693	chr4	145278836	145278837	rs17766287	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs17766287-T	0.275	1E-8		0.058	NR unit decrease	Illumina [NR] (imputed)	N
1693	chr4	145279672	145279673	rs7688932	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs7688932-T	0.255	4E-6		0.01	unit decrease	Illumina [NR] (imputed)	N
1693	chr4	145279672	145279673	rs7688932	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs7688932-T	0.256	5E-6		0.048	NR unit decrease	Illumina [NR] (imputed)	N
1693	chr4	145279700	145279701	rs7683975	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs7683975-A	0.301	1E-6		0.045	NR unit decrease	Illumina [NR] (imputed)	N
1693	chr4	145280377	145280378	rs6537280	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs6537280-T	0.305	7E-7		0.046	NR unit decrease	Illumina [NR] (imputed)	N
1693	chr4	145284207	145284208	rs7378179	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	4q31.21	NR	rs7378179-A	0.7213	1E-9	(Pericalcarine)	7.002994	[4.75-9.26] unit decrease	Affymetrix, Illumina [NR]	N
1693	chr4	145284207	145284208	rs7378179	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs7378179-A	0.698	1E-6		0.045	NR unit increase	Illumina [NR] (imputed)	N
1693	chr4	145286246	145286247	rs4240361	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs4240361-A	0.272	4E-11		0.014	unit increase	Illumina [NR] (imputed)	N
1693	chr4	145286246	145286247	rs4240361	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs4240361-A	0.275	1E-8		0.058	NR unit increase	Illumina [NR] (imputed)	N
1693	chr4	145286362	145286363	rs4240362	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs4240362-C	0.272	4E-11		0.014	unit increase	Illumina [NR] (imputed)	N
1693	chr4	145286362	145286363	rs4240362	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs4240362-C	0.275	1E-8		0.058	NR unit increase	Illumina [NR] (imputed)	N
1693	chr4	145291205	145291206	rs4465995	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs4465995-T	0.684	2E-7		0.048	NR unit increase	Illumina [NR] (imputed)	N
1693	chr4	145292059	145292060	rs6537283	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	4q31.21	NR	rs6537283-?	NR	4E-21				Affymetrix [~ 8270000] (imputed)	N
1693	chr4	145292675	145292676	rs4475093	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs4475093-C	0.304	3E-6		0.044	NR unit decrease	Illumina [NR] (imputed)	N
1693	chr4	145293038	145293039	rs970022	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	4q31.21	RP11-361D14.2	rs970022-C	NR	1E-10		0.0203356	[0.014-0.026] unit decrease	Affymetrix [321114] (imputed)	N
1693	chr4	145297418	145297419	rs10029738	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs10029738-A	0.694	2E-6		0.045	NR unit increase	Illumina [NR] (imputed)	N
1693	chr4	145297617	145297618	rs10029931	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs10029931-T	0.694	2E-6		0.045	NR unit increase	Illumina [NR] (imputed)	N
1693	chr4	145298828	145298829	rs7681655	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs7681655-A	0.694	2E-6		0.045	NR unit increase	Illumina [NR] (imputed)	N
1693	chr4	145300125	145300126	rs7376541	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs7376541-T	0.302	2E-6		0.045	NR unit decrease	Illumina [NR] (imputed)	N
1693	chr4	145300433	145300434	rs4469023	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs4469023-A	0.405	1E-6		0.045	NR unit decrease	Illumina [NR] (imputed)	N
1693	chr4	145300628	145300629	rs4370082	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs4370082-T	0.694	2E-6		0.045	NR unit increase	Illumina [NR] (imputed)	N
1693	chr4	145301381	145301382	rs7665807	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs7665807-A	0.694	2E-6		0.045	NR unit increase	Illumina [NR] (imputed)	N
1693	chr4	145302122	145302123	rs4318599	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs4318599-T	0.694	2E-6		0.045	NR unit increase	Illumina [NR] (imputed)	N
1693	chr4	145302154	145302155	rs1394998	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs1394998-T	0.727	2E-9		0.012	unit increase	Illumina [NR] (imputed)	N
1693	chr4	145302154	145302155	rs1394998	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs1394998-T	0.725	9E-7		0.048	NR unit increase	Illumina [NR] (imputed)	N
1693	chr4	145303690	145303691	rs6537284	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs6537284-A	0.305	1E-6		0.045	NR unit decrease	Illumina [NR] (imputed)	N
1693	chr4	145304603	145304604	rs4383570	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs4383570-T	0.305	1E-6		0.045	NR unit decrease	Illumina [NR] (imputed)	N
1693	chr4	145305356	145305357	rs7693416	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs7693416-T	0.695	1E-6		0.045	NR unit increase	Illumina [NR] (imputed)	N
1693	chr4	145306302	145306303	rs62334702	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs62334702-A	0.727	2E-9		0.012	unit decrease	Illumina [NR] (imputed)	N
1693	chr4	145306302	145306303	rs62334702	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs62334702-A	0.724	7E-7		0.048	NR unit decrease	Illumina [NR] (imputed)	N
1693	chr4	145306810	145306811	rs7699291	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs7699291-A	0.704	3E-6		0.044	NR unit increase	Illumina [NR] (imputed)	N
1693	chr4	145307420	145307421	rs12645910	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs12645910-T	0.305	1E-6		0.045	NR unit decrease	Illumina [NR] (imputed)	N
1693	chr4	145308298	145308299	rs1505766	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs1505766-T	0.274	2E-9		0.012	unit increase	Illumina [NR] (imputed)	N
1693	chr4	145308298	145308299	rs1505766	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs1505766-T	0.276	9E-7		0.048	NR unit increase	Illumina [NR] (imputed)	N
1693	chr4	145310146	145310147	rs6537285	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs6537285-A	0.296	3E-6		0.044	NR unit decrease	Illumina [NR] (imputed)	N
1693	chr4	145312026	145312027	rs6537287	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs6537287-A	0.305	1E-6		0.045	NR unit decrease	Illumina [NR] (imputed)	N
1693	chr4	145313640	145313641	rs28839214	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		4q31.21	GYPA	rs28839214-G	0.601042	2E-10		0.00891646	[0.0062-0.0117] unit decrease	Affymetrix [12370749]	N
1693	chr4	145313885	145313886	rs74877722	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs74877722-T	0.274	3E-11		0.014	unit increase	Illumina [NR] (imputed)	N
1693	chr4	145313885	145313886	rs74877722	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs74877722-T	0.277	1E-8		0.058	NR unit increase	Illumina [NR] (imputed)	N
1693	chr4	145314787	145314788	rs6827753	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs6827753-C	0.702	3E-6		0.044	NR unit increase	Illumina [NR] (imputed)	N
1693	chr4	145315286	145315287	rs7673195	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs7673195-A	0.26	2E-11		0.015	unit increase	Illumina [NR] (imputed)	N
1693	chr4	145315286	145315287	rs7673195	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs7673195-A	0.262	2E-8		0.06	NR unit increase	Illumina [NR] (imputed)	N
1693	chr4	145315658	145315659	rs6812520	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs6812520-A	0.304	1E-6		0.045	NR unit decrease	Illumina [NR] (imputed)	N
1693	chr4	145315784	145315785	rs6836151	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs6836151-A	0.684	4E-6		0.044	NR unit increase	Illumina [NR] (imputed)	N
1693	chr4	145316524	145316525	rs181700380	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs181700380-T	0.306	6E-7		0.013	unit increase	Illumina [NR] (imputed)	N
1693	chr4	145318362	145318363	rs148200221	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs148200221-A	0.663	2E-9		0.013	unit decrease	Illumina [NR] (imputed)	N
1693	chr4	145318362	145318363	rs148200221	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs148200221-A	0.661	7E-7		0.054	NR unit decrease	Illumina [NR] (imputed)	N
1693	chr4	145318378	145318379	rs184277845	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs184277845-A	0.653	2E-10		0.015	unit decrease	Illumina [NR] (imputed)	N
1693	chr4	145318378	145318379	rs184277845	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs184277845-A	0.65	4E-8		0.062	NR unit decrease	Illumina [NR] (imputed)	N
1693	chr4	145319543	145319544	rs12508709	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs12508709-T	0.404	2E-6		0.01	unit increase	Illumina [NR] (imputed)	N
1693	chr4	145320292	145320293	rs4572828	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs4572828-T	0.304	1E-6		0.045	NR unit decrease	Illumina [NR] (imputed)	N
1693	chr4	145320519	145320520	rs4373117	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs4373117-A	0.688	2E-6		0.045	NR unit increase	Illumina [NR] (imputed)	N
1693	chr4	145320630	145320631	rs13128377	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs13128377-T	0.275	3E-11		0.014	unit increase	Illumina [NR] (imputed)	N
1693	chr4	145320630	145320631	rs13128377	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs13128377-T	0.277	1E-8		0.058	NR unit increase	Illumina [NR] (imputed)	N
1693	chr4	145321005	145321006	rs7654571	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	4q31.21	NA	rs7654571-A	0.2252	3E-11		0.0128	[0.0091-0.0165] unit decrease	NR [~ 27400000] (imputed)	N
1693	chr4	145321067	145321068	rs7676032	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs7676032-C	0.694	2E-6		0.045	NR unit increase	Illumina [NR] (imputed)	N
1693	chr4	145321236	145321237	rs4420930	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs4420930-T	0.696	1E-6		0.045	NR unit increase	Illumina [NR] (imputed)	N
1693	chr4	145321354	145321355	rs4376087	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs4376087-T	0.687	1E-6		0.045	NR unit increase	Illumina [NR] (imputed)	N
1693	chr4	145321821	145321822	rs12500355	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs12500355-T	0.725	9E-11		0.014	unit decrease	Illumina [NR] (imputed)	N
1693	chr4	145321821	145321822	rs12500355	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs12500355-T	0.723	2E-8		0.057	NR unit decrease	Illumina [NR] (imputed)	N
1693	chr4	145326409	145326410	rs17767138	30172743	Liang X	2018-08-30	Bone	Assessing the genetic correlations between early growth parameters and bone mineral density: A polygenic risk score analysis.	Femoral neck bone mineral density	2,286 European ancestry individuals	NA	4q31.21	HHIP, GYPA	rs17767138-?	NR	6E-6				Affymetrix [753382]	N
1693	chr4	145330380	145330381	rs34345254	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	4q31.21		rs34345254-?	NR	6E-8				NR [~ 8900000] (imputed)	N
1693	chr4	145330627	145330628	rs13109426	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	4q31.21	HHIP-AS1	rs13109426-A	0.5918	1E-7		0.0136	[0.0085-0.0187] unit decrease	Affymetrix [19819130] (imputed)	N
1693	chr4	145330627	145330628	rs13109426	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	4q31.21	HHIP-AS1	rs13109426-A	0.5918	4E-21		0.0226	[0.018-0.027] unit decrease	Affymetrix [19819130] (imputed)	N
1693	chr4	145330627	145330628	rs13109426	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	4q31.21	HHIP-AS1	rs13109426-A	0.5918	1E-11		0.0161	[0.011-0.021] unit decrease	Affymetrix [19819130] (imputed)	N
1693	chr4	145330791	145330792	rs17767210	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	4q31.21		rs17767210-?	NR	2E-28				NR [~ 8900000] (imputed)	N
1693	chr4	145333608	145333609	rs17019336	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	4q31.21	NA	rs17019336-A	0.2291	2E-11		0.0128	[0.0091-0.0165] unit decrease	NR [~ 27400000] (imputed)	N
1693	chr4	145333782	145333783	rs17019340	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs17019340-A	0.275	3E-11		0.014	unit increase	Illumina [NR] (imputed)	N
1693	chr4	145333782	145333783	rs17019340	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs17019340-A	0.278	7E-9		0.059	NR unit increase	Illumina [NR] (imputed)	N
1693	chr4	145336471	145336472	rs4290852	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs4290852-T	0.281	2E-11		0.014	unit increase	Illumina [NR] (imputed)	N
1693	chr4	145336471	145336472	rs4290852	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs4290852-T	0.283	1E-8		0.059	NR unit increase	Illumina [NR] (imputed)	N
1693	chr4	145348097	145348098	rs12499537	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs12499537-T	0.298	4E-10		0.012	unit increase	Illumina [NR] (imputed)	N
1693	chr4	145348097	145348098	rs12499537	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs12499537-T	0.3	3E-7		0.049	NR unit increase	Illumina [NR] (imputed)	N
1693	chr4	145354000	145354001	rs34490121	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs34490121-A	0.275	2E-11		0.014	unit increase	Illumina [NR] (imputed)	N
1693	chr4	145354000	145354001	rs34490121	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs34490121-A	0.278	5E-9		0.06	NR unit increase	Illumina [NR] (imputed)	N
1693	chr4	145354522	145354523	rs1490151	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs1490151-T	0.724	2E-11		0.014	unit decrease	Illumina [NR] (imputed)	N
1693	chr4	145354522	145354523	rs1490151	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs1490151-T	0.722	5E-9		0.06	NR unit decrease	Illumina [NR] (imputed)	N
1693	chr4	145354911	145354912	rs57901555	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs57901555-T	0.725	2E-11		0.014	unit decrease	Illumina [NR] (imputed)	N
1693	chr4	145354911	145354912	rs57901555	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs57901555-T	0.722	5E-9		0.06	NR unit decrease	Illumina [NR] (imputed)	N
1693	chr4	145355010	145355011	rs139516594	28430825	Ng MCY	2017-04-21	PLoS Genet	Discovery and fine-mapping of adiposity loci using high density imputation of genome-wide association studies in individuals of African ancestry: African Ancestry Anthropometry Genetics Consortium.	Waist-to-hip ratio adjusted for body mass index	4,783 African American men, 15,601 African American women	981 African American men, 1,730 African American women, 104,079 European ancestry men, 116,742 European ancestry women	4q31.21	HHIP	rs139516594-A	0.0036	7E-6	(AA, Women)	0.65	[0.37-0.93] unit increase	Affymetrix, Illumina [20502658] (imputed)	N
1693	chr4	145355064	145355065	rs57007317	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs57007317-A	0.725	2E-11		0.014	unit decrease	Illumina [NR] (imputed)	N
1693	chr4	145355064	145355065	rs57007317	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs57007317-A	0.722	4E-9		0.06	NR unit decrease	Illumina [NR] (imputed)	N
1693	chr4	145356307	145356308	rs1817762	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	4q31.21	RP11-361D14.2	rs1817762-T	NR	2E-9		0.021583	[0.014-0.029] unit increase	Affymetrix [321114] (imputed)	N
1694	chr4	145361937	145361938	rs13114851	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs13114851-T	0.725	1E-11		0.014	unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145361937	145361938	rs13114851	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs13114851-T	0.722	4E-9		0.06	NR unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145363573	145363574	rs12499125	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs12499125-A	0.275	1E-11		0.014	unit increase	Illumina [NR] (imputed)	N
1694	chr4	145363573	145363574	rs12499125	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs12499125-A	0.278	4E-9		0.06	NR unit increase	Illumina [NR] (imputed)	N
1694	chr4	145366499	145366500	rs12499685	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs12499685-T	0.727	2E-11		0.014	unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145366499	145366500	rs12499685	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs12499685-T	0.725	5E-9		0.06	NR unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145366976	145366977	rs17019354	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs17019354-T	0.275	9E-12		0.014	unit increase	Illumina [NR] (imputed)	N
1694	chr4	145366976	145366977	rs17019354	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs17019354-T	0.278	3E-9		0.061	NR unit increase	Illumina [NR] (imputed)	N
1694	chr4	145369745	145369746	rs6855812	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs6855812-A	0.724	1E-11		0.014	unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145369745	145369746	rs6855812	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs6855812-A	0.721	4E-9		0.061	NR unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145371345	145371346	rs749316	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	4q31.21	RP11-361D14.2	rs749316-G	NR	4E-8		0.0171977	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
1694	chr4	145371435	145371436	rs13142439	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs13142439-A	0.723	1E-11		0.014	unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145371435	145371436	rs13142439	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs13142439-A	0.721	4E-9		0.061	NR unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145372247	145372248	rs12510916	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs12510916-T	0.28	8E-13		0.016	unit increase	Illumina [NR] (imputed)	N
1694	chr4	145372247	145372248	rs12510916	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs12510916-T	0.282	8E-10		0.064	NR unit increase	Illumina [NR] (imputed)	N
1694	chr4	145372247	145372248	rs12510916	25101718	Lee JH	2015-03-01	Am J Respir Cell Mol Biol	IREB2 and GALC are associated with pulmonary artery enlargement in chronic obstructive pulmonary disease.	Chronic obstructive pulmonary disease	3,281 European ancestry cases, 494 African American cases, 2,712 European ancestry smoker controls, 1,749 African American smoker controls	NA	4q31.21	HHIP, HHIP-AS1	rs12510916-C	0.69	1E-7		1.27	[1.16-1.39]	Illumina [NR] (imputed)	N
1694	chr4	145373133	145373134	rs17019365	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	4q31.21	NR	rs17019365-?	NR	4E-13				Affymetrix [~ 8270000] (imputed)	N
1694	chr4	145374759	145374760	rs6828795	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs6828795-T	0.279	9E-12		0.014	unit increase	Illumina [NR] (imputed)	N
1694	chr4	145374759	145374760	rs6828795	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs6828795-T	0.281	6E-9		0.06	NR unit increase	Illumina [NR] (imputed)	N
1694	chr4	145375404	145375405	rs17019368	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	4q31.21	RP11-361D14.2	rs17019368-G	NR	6E-14		0.023692	[0.018-0.03] unit increase	Affymetrix [321114] (imputed)	N
1694	chr4	145375404	145375405	rs17019368	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	4q31.21	RP11-361D14.2	rs17019368-G	NR	7E-10		0.0194951	[0.013-0.026] unit increase	Affymetrix [321169] (imputed)	N
1694	chr4	145377898	145377899	rs76125298	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	4q31.21	NR	rs76125298-A	NR	1E-10		0.06	[0.042-0.078] unit decrease	Affymetrix [9000000] (imputed)	N
1694	chr4	145380632	145380633	rs62334742	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs62334742-A	0.34	2E-11		0.014	unit increase	Illumina [NR] (imputed)	N
1694	chr4	145380632	145380633	rs62334742	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs62334742-A	0.342	4E-11		0.064	NR unit increase	Illumina [NR] (imputed)	N
1694	chr4	145380801	145380802	rs1505770	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs1505770-T	0.661	2E-11		0.013	unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145380801	145380802	rs1505770	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs1505770-T	0.658	3E-11		0.065	NR unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145382526	145382527	rs55694701	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs55694701-T	0.339	1E-11		0.014	unit increase	Illumina [NR] (imputed)	N
1694	chr4	145382526	145382527	rs55694701	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs55694701-T	0.342	3E-11		0.065	NR unit increase	Illumina [NR] (imputed)	N
1694	chr4	145382531	145382532	rs56268708	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs56268708-C	0.662	2E-11		0.014	unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145382531	145382532	rs56268708	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs56268708-C	0.659	3E-11		0.065	NR unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145383333	145383334	rs75674934	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	4q31.21	RP11-361D14.2	rs75674934-A	NR	4E-8		0.0288578	[0.019-0.039] unit increase	Affymetrix [319769] (imputed)	N
1694	chr4	145383333	145383334	rs75674934	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	4q31.21	RP11-361D14.2	rs75674934-A	NR	1E-12		0.0378801	[0.027-0.048] unit increase	Affymetrix [321114] (imputed)	N
1694	chr4	145383333	145383334	rs75674934	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	4q31.21	RP11-361D14.2	rs75674934-A	NR	7E-9		0.0308738	[0.02-0.041] unit increase	Affymetrix [321169] (imputed)	N
1694	chr4	145386472	145386473	rs11733975	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs11733975-T	0.617	2E-6		0.043	NR unit increase	Illumina [NR] (imputed)	N
1694	chr4	145388833	145388834	rs2130499	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs2130499-T	0.339	2E-11		0.013	unit increase	Illumina [NR] (imputed)	N
1694	chr4	145388833	145388834	rs2130499	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs2130499-T	0.342	3E-11		0.065	NR unit increase	Illumina [NR] (imputed)	N
1694	chr4	145389083	145389084	rs79139724	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	4q31.21		rs79139724-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1694	chr4	145397865	145397866	rs56304346	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs56304346-A	0.656	6E-11		0.013	unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145397865	145397866	rs56304346	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs56304346-A	0.653	4E-10		0.059	NR unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145399831	145399832	rs35440220	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs35440220-A	0.656	2E-11		0.013	unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145399831	145399832	rs35440220	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs35440220-A	0.653	2E-11		0.065	NR unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145401949	145401950	rs7666298	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs7666298-A	0.346	2E-11		0.013	unit increase	Illumina [NR] (imputed)	N
1694	chr4	145401949	145401950	rs7666298	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs7666298-A	0.347	4E-10		0.059	NR unit increase	Illumina [NR] (imputed)	N
1694	chr4	145404512	145404513	rs1961266	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs1961266-A	0.346	2E-11		0.013	unit increase	Illumina [NR] (imputed)	N
1694	chr4	145404512	145404513	rs1961266	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs1961266-A	0.347	4E-10		0.059	NR unit increase	Illumina [NR] (imputed)	N
1694	chr4	145404825	145404826	rs148994656	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	4q31.21	RP11-361D14.2	rs148994656-A	NR	1E-9		0.0470599	[0.032-0.062] unit increase	Affymetrix [323123] (imputed)	N
1694	chr4	145407721	145407722	rs1813337	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs1813337-A	0.345	2E-11		0.013	unit increase	Illumina [NR] (imputed)	N
1694	chr4	145407721	145407722	rs1813337	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs1813337-A	0.347	6E-10		0.058	NR unit increase	Illumina [NR] (imputed)	N
1694	chr4	145410476	145410477	rs13142879	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs13142879-T	0.344	1E-11		0.013	unit increase	Illumina [NR] (imputed)	N
1694	chr4	145410476	145410477	rs13142879	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs13142879-T	0.345	2E-11		0.064	NR unit increase	Illumina [NR] (imputed)	N
1694	chr4	145410792	145410793	rs75588466	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs75588466-A	0.96	2E-8		0.046	unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145410792	145410793	rs75588466	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs75588466-A	0.96	1E-6		0.196	NR unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145412510	145412511	rs7656246	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs7656246-A	0.344	1E-11		0.013	unit increase	Illumina [NR] (imputed)	N
1694	chr4	145412510	145412511	rs7656246	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs7656246-A	0.345	2E-11		0.064	NR unit increase	Illumina [NR] (imputed)	N
1694	chr4	145418423	145418424	rs533351701	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	135,482 East Asian ancestry individuals	NA	4q31.21		rs533351701-C	0.006432	5E-8		0.137935	[0.088-0.187] unit increase	Illumina [13477028] (imputed)	N
1694	chr4	145419509	145419510	rs7684769	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	4q31.21	NR	rs7684769-?	NR	1E-13				Affymetrix [~ 8270000] (imputed)	N
1694	chr4	145420340	145420341	rs17712401	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	4q31.21	NR	rs17712401-A	NR	6E-13		0.0426	[0.031-0.054] unit decrease	Affymetrix [9000000] (imputed)	N
1694	chr4	145421840	145421841	rs13133820	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Daytime sleep phenotypes	874 European ancestry individuals	NA	4q31.21	KRT18P51, HHIP-AS1, HHIP	rs13133820-T	NR	2E-6	(daytime napping)	0.5775	[0.34-0.82] unit increase	Affymetrix [7141204] (imputed)	N
1694	chr4	145423967	145423968	rs973796	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs973796-A	0.66	3E-12		0.014	unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145423967	145423968	rs973796	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs973796-A	0.657	8E-12		0.065	NR unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145425751	145425752	rs1960493	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs1960493-A	0.34	1E-10		0.012	unit increase	Illumina [NR] (imputed)	N
1694	chr4	145425751	145425752	rs1960493	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs1960493-A	0.342	1E-10		0.06	NR unit increase	Illumina [NR] (imputed)	N
1694	chr4	145425848	145425849	rs35937742	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs35937742-A	0.66	1E-10		0.012	unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145425848	145425849	rs35937742	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs35937742-A	0.658	1E-10		0.06	NR unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145425935	145425936	rs34265962	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs34265962-A	0.656	1E-12		0.014	unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145425935	145425936	rs34265962	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs34265962-A	0.655	3E-12		0.067	NR unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145430296	145430297	rs6827794	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	4q31.21	RP11-361D14.2	rs6827794-T	NR	1E-8		0.0196816	[0.013-0.026] unit decrease	Affymetrix [321016] (imputed)	N
1694	chr4	145431092	145431093	rs1512283	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs1512283-T	0.34	1E-10		0.012	unit increase	Illumina [NR] (imputed)	N
1694	chr4	145431092	145431093	rs1512283	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs1512283-T	0.342	1E-10		0.06	NR unit increase	Illumina [NR] (imputed)	N
1694	chr4	145431496	145431497	rs1512282	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	4q31.21		rs1512282-?	NR	7E-8				NR [~ 8900000] (imputed)	N
1694	chr4	145431496	145431497	rs1512282	27612410	van der Plaat DA	2016-09-06	J Allergy Clin Immunol	Genome-wide association study on the FEV1/FVC ratio in never-smokers identifies HHIP and FAM13A.	Pre bronchodilator FEV1/FVC ratio in never-smokers	5,070 European ancestry individuals	1,966 European ancestry individuals	4q31.21	HHIP	rs1512282-G	0.41	3E-8		0.58	[0.36-0.8] % increase	Illumina [227981]	N
1694	chr4	145431496	145431497	rs1512282	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs1512282-A	0.338	7E-11		0.012	unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145431496	145431497	rs1512282	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs1512282-A	0.34	4E-11		0.061	NR unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145433290	145433291	rs13142776	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs13142776-A	0.34	2E-12		0.014	unit increase	Illumina [NR] (imputed)	N
1694	chr4	145433290	145433291	rs13142776	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs13142776-A	0.343	7E-12		0.066	NR unit increase	Illumina [NR] (imputed)	N
1694	chr4	145433574	145433575	rs7678427	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs7678427-A	0.341	1E-12		0.014	unit increase	Illumina [NR] (imputed)	N
1694	chr4	145433574	145433575	rs7678427	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs7678427-A	0.343	5E-12		0.066	NR unit increase	Illumina [NR] (imputed)	N
1694	chr4	145434583	145434584	rs1032295	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs1032295-T	0.582	3E-12		0.014	unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145434583	145434584	rs1032295	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs1032295-T	0.581	3E-10		0.063	NR unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145434687	145434688	rs1032296	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Kidney volume	32,860 European ancestry individuals	NA	4q31.21	HHIP	rs1032296-?	NR	1E-9		0.0388	NR L increase	Affymetrix [9390170] (imputed)	N
1694	chr4	145434687	145434688	rs1032296	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	4q31.21	RP11-361D14.2	rs1032296-T	NR	2E-10		0.0181971	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
1694	chr4	145434687	145434688	rs1032296	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	4q31.21	RP11-361D14.2	rs1032296-T	NR	5E-10		0.0178428	[0.012-0.023] unit increase	Affymetrix [319769] (imputed)	N
1694	chr4	145434687	145434688	rs1032296	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs1032296-T	0.586	2E-8		0.011	unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145434687	145434688	rs1032296	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs1032296-T	0.585	2E-7		0.048	NR unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145434687	145434688	rs1032296	26423011	Wain LV	2015-09-27	Lancet Respir Med	Novel insights into the genetics of smoking behaviour, lung function, and chronic obstructive pulmonary disease (UK BiLEVE): a genetic association study in UK Biobank.	Lung function in heavy smokers (low FEV1 vs high FEV1)	9,748 European ancestry individuals with low FEV1 measurements, 4,906 European ancestry individuals with high FEV1 measurements	NA	4q31.21	HHIP	rs1032296-T	0.430	7E-7		1.14	[1.08-1.20]	Affymetrix [28509962] (imputed)	N
1694	chr4	145434743	145434744	rs1032297	33766948	Zhu Z	2021-03-25	Eur Respir J	A large-scale genome-wide association analysis of lung function in the Chinese population identifies novel loci and highlights shared genetic etiology with obesity.	Lung function (FEV1)	100,285 Chinese ancestry individuals	NA	4q31.21		rs1032297-A	0.69	1E-8		0.027	L decrease	Affymetrix [NR] (imputed)	N
1694	chr4	145434743	145434744	rs1032297	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Pre bronchodilator FEV1/FVC ratio	6,659 European ancestry current and former smoker individuals	NA	4q31.21	LOC646576, HHIP	rs1032297-?	NR	4E-9		0.01537	unit increase	Illumina [NR] (imputed)	N
1694	chr4	145434743	145434744	rs1032297	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	4q31.21	Intergenic	rs1032297-A	0.49	5E-6		0.011	NR unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145434743	145434744	rs1032297	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs1032297-A	0.408	2E-16		0.016	unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145434743	145434744	rs1032297	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs1032297-A	0.411	6E-13		0.068	NR unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145434900	145434901	rs1512281	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	4q31.21	Intergenic	rs1512281-A	0.602	5E-6		0.011	NR unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145434900	145434901	rs1512281	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs1512281-A	0.631	2E-17		0.017	unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145434900	145434901	rs1512281	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs1512281-A	0.628	6E-14		0.072	NR unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145434900	145434901	rs1512281	26030696	Cho MH	2015-06-01	Am J Respir Crit Care Med	A Genome-Wide Association Study of Emphysema and Airway Quantitative Imaging Phenotypes.	Percentage gas trapping	3,243 European ancestry chronic obstructive pulmonary disease cases, 901 African American chronic obstructive pulmonary disease cases,  3,062 European ancestry controls, 2,132 African American controls	NA	4q31.21	HHIP-AS1	rs1512281-A	NR	2E-7	(All)	0.08	[0.049-0.111] unit increase	Illumina [6900000] (imputed)	N
1694	chr4	145436323	145436324	rs12504628	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	4q31.21	Intergenic	rs12504628-T	0.614	1E-6		0.012	NR unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145436323	145436324	rs12504628	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs12504628-T	0.641	9E-18		0.017	unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145436323	145436324	rs12504628	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs12504628-T	0.639	9E-14		0.071	NR unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145436323	145436324	rs12504628	20010834	Repapi E	2009-12-13	Nat Genet	Genome-wide association study identifies five loci associated with lung function.	Pulmonary function	20,288 European ancestry individuals	up to 54,276 European ancestry individuals	4q31.21	HHIP	rs12504628-T	0.56	6E-13	(FEV1/FVC)	0.077	[0.055-0.099] s.d. decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1694	chr4	145436893	145436894	rs7697189	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	4q31.21	Intergenic	rs7697189-C	0.386	1E-6		0.012	NR unit increase	Illumina [NR] (imputed)	N
1694	chr4	145436893	145436894	rs7697189	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs7697189-C	0.359	1E-17		0.017	unit increase	Illumina [NR] (imputed)	N
1694	chr4	145436893	145436894	rs7697189	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs7697189-C	0.361	9E-14		0.071	NR unit increase	Illumina [NR] (imputed)	N
1694	chr4	145437013	145437014	rs7681384	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs7681384-T	0.411	6E-10		0.011	unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145437013	145437014	rs7681384	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs7681384-T	0.412	1E-8		0.05	NR unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145437080	145437081	rs7698984	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs7698984-A	0.602	2E-9		0.011	unit increase	Illumina [NR] (imputed)	N
1694	chr4	145437080	145437081	rs7698984	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs7698984-A	0.601	3E-8		0.05	NR unit increase	Illumina [NR] (imputed)	N
1694	chr4	145437318	145437319	rs7677035	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs7677035-A	0.572	2E-10		0.012	unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145437318	145437319	rs7677035	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs7677035-A	0.57	6E-9		0.052	NR unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145439026	145439027	rs4835637	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs4835637-A	0.394	2E-9		0.011	unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145439026	145439027	rs4835637	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs4835637-A	0.397	4E-8		0.05	NR unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145440287	145440288	rs6829956	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs6829956-T	0.606	2E-9		0.011	unit increase	Illumina [NR] (imputed)	N
1694	chr4	145440287	145440288	rs6829956	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs6829956-T	0.603	3E-8		0.05	NR unit increase	Illumina [NR] (imputed)	N
1694	chr4	145442363	145442364	rs13116999	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	4q31.21	HHIP-AS1	rs13116999-A	0.5379	3E-153		0.0665	[0.062-0.071] unit increase	Affymetrix [19819130] (imputed)	N
1694	chr4	145442363	145442364	rs13116999	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	4q31.21	HHIP-AS1	rs13116999-A	0.5379	1E-10		0.0152	[0.01-0.02] unit increase	Affymetrix [19819130] (imputed)	N
1694	chr4	145442363	145442364	rs13116999	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	4q31.21	HHIP-AS1	rs13116999-A	0.5379	7E-111		0.0535	[0.049-0.058] unit increase	Affymetrix [19819130] (imputed)	N
1694	chr4	145442363	145442364	rs13116999	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	4q31.21	HHIP-AS1	rs13116999-A	0.5379	1E-66		0.0404	[0.036-0.045] unit increase	Affymetrix [19819130] (imputed)	N
1694	chr4	145442363	145442364	rs13116999	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs13116999-A	0.606	3E-9		0.011	unit increase	Illumina [NR] (imputed)	N
1694	chr4	145442363	145442364	rs13116999	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs13116999-A	0.603	4E-8		0.05	NR unit increase	Illumina [NR] (imputed)	N
1694	chr4	145444038	145444039	rs13107186	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs13107186-A	0.4	1E-9		0.011	unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145444038	145444039	rs13107186	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs13107186-A	0.401	9E-8		0.048	NR unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145445116	145445117	rs4619908	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs4619908-A	0.456	1E-6		0.01	unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145445300	145445300	rs200220861	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	4q31.21	RP11-361D14.2	rs200220861-G	NR	2E-13		0.0209261	[0.015-0.026] unit decrease	Affymetrix [321016] (imputed)	N
1694	chr4	145445324	145445325	rs4337751	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs4337751-T	0.568	5E-8		0.012	unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145445324	145445325	rs4337751	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs4337751-T	0.572	9E-8		0.06	NR unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145445693	145445694	rs7658614	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs7658614-A	0.597	2E-9		0.011	unit increase	Illumina [NR] (imputed)	N
1694	chr4	145445693	145445694	rs7658614	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs7658614-A	0.595	1E-7		0.048	NR unit increase	Illumina [NR] (imputed)	N
1694	chr4	145445778	145445779	rs138641402	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FEV1/FVC)	48,943 European ancestry individuals	57,176 European ancestry individuals, 38,199 individuals.	4q31.21	HHIP	rs138641402-T	0.3808	5E-33		0.082	[0.068-0.096] unit increase	Affymetrix [27624732] (imputed)	N
1694	chr4	145445778	145445779	rs138641402	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FEV1)	48,943 European ancestry individuals.	57,176 European ancestry individuals, 38,199 individuals.	4q31.21	HHIP	rs138641402-T	0.38	2E-11		0.046	[0.032-0.06] unit increase	Affymetrix [up to 27624732] (imputed)	N
1694	chr4	145445778	145445779	rs138641402	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	4q31.21	Intergenic	rs138641402-A	0.652	2E-6		0.013	NR unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145445778	145445779	rs138641402	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs138641402-A	0.67	2E-18		0.019	unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145445778	145445779	rs138641402	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs138641402-A	0.668	9E-15		0.083	NR unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145445778	145445779	rs138641402	25241909	Lee JH	2014-09-21	Respir Res	Genetic susceptibility for chronic bronchitis in chronic obstructive pulmonary disease.	Chronic obstructive pulmonary disease	3,777 European ancestry cases, 3,520 European ancestry smoker controls	NA	4q31.21	HHIP-AS1	rs138641402-A	0.63	4E-9		1.3	[1.19-1.42]	Illumina [NR] (imputed)	N
1694	chr4	145445778	145445779	rs138641402	25006744	Castaldi PJ	2014-07-09	Am J Respir Crit Care Med	Genome-wide association identifies regulatory Loci associated with distinct local histogram emphysema patterns.	Local histogram emphysema pattern	3,732 European ancestry smoker individuals, 2,724 European ancestry chronic obstructive pulmonary disease smoker cases, 2,372 African American smoker individuals, 786 African American chronic obstructive pulmonary disease smoker cases	NA	4q31.21	HHIP	rs138641402-A	0.64	2E-9	(normal)	0.03	[0.022-0.038] unit decrease	Illumina [6942916] (imputed)	N
1694	chr4	145445778	145445779	rs138641402	25006744	Castaldi PJ	2014-07-09	Am J Respir Crit Care Med	Genome-wide association identifies regulatory Loci associated with distinct local histogram emphysema patterns.	Local histogram emphysema pattern	3,732 European ancestry smoker individuals, 2,724 European ancestry chronic obstructive pulmonary disease smoker cases, 2,372 African American smoker individuals, 786 African American chronic obstructive pulmonary disease smoker cases	NA	4q31.21	HHIP	rs138641402-A	0.64	1E-8	(normal, EA)	0.03	[0.022-0.038] unit decrease	Illumina [6942916] (imputed)	N
1694	chr4	145448055	145448056	rs12499182	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	4q31.21	Intergenic	rs12499182-C	0.351	1E-6		0.013	NR unit increase	Illumina [NR] (imputed)	N
1694	chr4	145448055	145448056	rs12499182	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs12499182-C	0.328	3E-18		0.019	unit increase	Illumina [NR] (imputed)	N
1694	chr4	145448055	145448056	rs12499182	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs12499182-C	0.331	2E-14		0.081	NR unit increase	Illumina [NR] (imputed)	N
1694	chr4	145449525	145449525	rs35679104	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic obstructive pulmonary disease	13,530 European ancestry cases, 454,945 European ancestry controls, 4,017 East Asian ancestry cases, 162,653 East Asian ancestry controls	NA	4q31.21		rs35679104-GAT	NR	2E-11		0.0778	[0.055-0.101] unit decrease	Affymetrix, Illumina [25843162] (imputed)	N
1694	chr4	145450958	145450959	rs1512285	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs1512285-A	0.425	2E-9		0.011	unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145450958	145450959	rs1512285	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs1512285-A	0.428	5E-8		0.05	NR unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145451502	145451503	rs145968728	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs145968728-A	0.03	5E-7		0.044	unit increase	Illumina [NR] (imputed)	N
1694	chr4	145451502	145451503	rs145968728	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs145968728-A	0.03	9E-7		0.211	NR unit increase	Illumina [NR] (imputed)	N
1694	chr4	145451912	145451913	rs4835639	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs4835639-T	0.606	3E-9		0.011	unit increase	Illumina [NR] (imputed)	N
1694	chr4	145451912	145451913	rs4835639	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs4835639-T	0.603	6E-8		0.049	NR unit increase	Illumina [NR] (imputed)	N
1694	chr4	145452388	145452389	rs6821114	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs6821114-A	0.392	6E-9		0.011	unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145452388	145452389	rs6821114	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs6821114-A	0.395	9E-8		0.049	NR unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145452702	145452703	rs6821716	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs6821716-A	0.418	4E-7		0.01	unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145452702	145452703	rs6821716	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs6821716-A	0.42	1E-6		0.045	NR unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145452703	145452704	rs6843820	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs6843820-C	0.582	2E-7		0.01	unit increase	Illumina [NR] (imputed)	N
1694	chr4	145452703	145452704	rs6843820	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs6843820-C	0.581	6E-7		0.047	NR unit increase	Illumina [NR] (imputed)	N
1694	chr4	145452782	145452783	rs6845536	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs6845536-T	0.405	7E-9		0.01	unit increase	Illumina [NR] (imputed)	N
1694	chr4	145452782	145452783	rs6845536	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs6845536-T	0.407	2E-7		0.046	NR unit increase	Illumina [NR] (imputed)	N
1694	chr4	145454227	145454228	rs1489764	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs1489764-T	0.389	5E-8		0.01	unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145454227	145454228	rs1489764	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs1489764-T	0.392	5E-7		0.045	NR unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145454231	145454232	rs1489763	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	4q31.21	Intergenic	rs1489763-T	0.386	3E-6		0.011	NR unit increase	Illumina [NR] (imputed)	N
1694	chr4	145454231	145454232	rs1489763	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs1489763-T	0.361	2E-17		0.016	unit increase	Illumina [NR] (imputed)	N
1694	chr4	145454231	145454232	rs1489763	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs1489763-T	0.364	5E-13		0.068	NR unit increase	Illumina [NR] (imputed)	N
1694	chr4	145454373	145454374	rs13129662	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	4q31.21	Intergenic	rs13129662-T	0.386	3E-6		0.011	NR unit increase	Illumina [NR] (imputed)	N
1694	chr4	145454373	145454374	rs13129662	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs13129662-T	0.364	1E-17		0.017	unit increase	Illumina [NR] (imputed)	N
1694	chr4	145454373	145454374	rs13129662	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs13129662-T	0.366	1E-13		0.071	NR unit increase	Illumina [NR] (imputed)	N
1694	chr4	145454963	145454964	rs1489762	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	4q31.21	Intergenic	rs1489762-T	0.614	3E-6		0.011	NR unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145454963	145454964	rs1489762	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs1489762-T	0.638	4E-17		0.016	unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145454963	145454964	rs1489762	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs1489762-T	0.636	9E-13		0.067	NR unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145455490	145455491	rs1489761	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs1489761-A	0.602	1E-8		0.01	unit increase	Illumina [NR] (imputed)	N
1694	chr4	145455490	145455491	rs1489761	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs1489761-A	0.6	3E-7		0.046	NR unit increase	Illumina [NR] (imputed)	N
1694	chr4	145455549	145455550	rs7435469	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	4q31.21	Intergenic	rs7435469-T	0.388	2E-6		0.012	NR unit increase	Illumina [NR] (imputed)	N
1694	chr4	145455549	145455550	rs7435469	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs7435469-T	0.366	1E-17		0.017	unit increase	Illumina [NR] (imputed)	N
1694	chr4	145455549	145455550	rs7435469	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs7435469-T	0.367	2E-13		0.071	NR unit increase	Illumina [NR] (imputed)	N
1694	chr4	145457140	145457141	rs7692102	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs7692102-A	0.393	2E-8		0.01	unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145457140	145457141	rs7692102	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs7692102-A	0.395	3E-7		0.047	NR unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145458000	145458001	rs7674469	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs7674469-A	0.608	4E-8		0.01	unit increase	Illumina [NR] (imputed)	N
1694	chr4	145458000	145458001	rs7674469	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs7674469-A	0.605	5E-7		0.046	NR unit increase	Illumina [NR] (imputed)	N
1694	chr4	145458483	145458484	rs11936476	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	4q31.21	Intergenic	rs11936476-T	0.614	3E-6		0.011	NR unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145458483	145458484	rs11936476	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs11936476-T	0.636	1E-17		0.017	unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145458483	145458484	rs11936476	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs11936476-T	0.634	1E-13		0.071	NR unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145460229	145460230	rs13147758	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	4q31.21	Intergenic	rs13147758-A	0.614	4E-6		0.011	NR unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145460229	145460230	rs13147758	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs13147758-A	0.636	1E-17		0.017	unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145460229	145460230	rs13147758	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs13147758-A	0.634	1E-13		0.071	NR unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145460229	145460230	rs13147758	19300500	Wilk JB	2009-03-20	PLoS Genet	A genome-wide association study of pulmonary function measures in the Framingham Heart Study.	Pulmonary function	7,691 European ancestry individuals	835 European ancestry individuals	4q31.21	HHIP	rs13147758-G	0.39	8E-11		0.1	[NR] % increase in FEV1/FVC ratio	Affymetrix [2540223] (imputed)	N
1694	chr4	145460337	145460338	rs13148031	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	4q31.21	Intergenic	rs13148031-A	0.614	4E-6		0.011	NR unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145460337	145460338	rs13148031	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs13148031-A	0.642	4E-16		0.016	unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145460337	145460338	rs13148031	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs13148031-A	0.639	5E-13		0.068	NR unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145461118	145461119	rs79634326	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	4q31.21	RP11-361D14.2	rs79634326-C	NR	1E-13		0.0356301	[0.026-0.045] unit increase	Affymetrix [321016] (imputed)	N
1694	chr4	145461118	145461119	rs79634326	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	4q31.21		rs79634326-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1694	chr4	145462363	145462364	rs720484	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	4q31.21	Intergenic	rs720484-A	0.386	4E-6		0.011	NR unit increase	Illumina [NR] (imputed)	N
1694	chr4	145462363	145462364	rs720484	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs720484-A	0.41	2E-12		0.013	unit increase	Illumina [NR] (imputed)	N
1694	chr4	145462363	145462364	rs720484	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs720484-A	0.41	3E-9		0.052	NR unit increase	Illumina [NR] (imputed)	N
1694	chr4	145462587	145462588	rs720485	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	4q31.21	Intergenic	rs720485-A	0.502	4E-6		0.011	NR unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145462587	145462588	rs720485	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs720485-A	0.579	1E-17		0.017	unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145462587	145462588	rs720485	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs720485-A	0.578	1E-13		0.071	NR unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145463230	145463231	rs6828540	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	4q31.21		rs6828540-?	NR	1E-245				NR [~ 8900000] (imputed)	N
1694	chr4	145463230	145463231	rs6828540	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	4q31.21	Intergenic	rs6828540-A	0.386	4E-6		0.011	NR unit increase	Illumina [NR] (imputed)	N
1694	chr4	145463230	145463231	rs6828540	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs6828540-A	0.387	8E-14		0.014	unit increase	Illumina [NR] (imputed)	N
1694	chr4	145463230	145463231	rs6828540	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs6828540-A	0.387	7E-10		0.054	NR unit increase	Illumina [NR] (imputed)	N
1694	chr4	145463520	145463521	rs6833979	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs6833979-A	0.314	7E-15		0.016	unit increase	Illumina [NR] (imputed)	N
1694	chr4	145463520	145463521	rs6833979	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs6833979-A	0.316	1E-12		0.074	NR unit increase	Illumina [NR] (imputed)	N
1694	chr4	145463532	145463533	rs6817238	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	4q31.21	Intergenic	rs6817238-T	0.664	2E-6		0.013	NR unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145463532	145463533	rs6817238	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs6817238-T	0.689	6E-16		0.017	unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145463532	145463533	rs6817238	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs6817238-T	0.687	3E-13		0.076	NR unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145463566	145463567	rs6835650	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	4q31.21	Intergenic	rs6835650-T	0.334	4E-6		0.013	NR unit increase	Illumina [NR] (imputed)	N
1694	chr4	145463566	145463567	rs6835650	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs6835650-T	0.317	3E-18		0.019	unit increase	Illumina [NR] (imputed)	N
1694	chr4	145463566	145463567	rs6835650	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs6835650-T	0.318	8E-14		0.081	NR unit increase	Illumina [NR] (imputed)	N
1694	chr4	145464073	145464074	rs6537291	30320955	Baird DA	2018-10-15	J Bone Miner Res	Identification of novel loci associated with hip shape: a meta-analysis of genome-wide association studies.	Hip shape (DXA scan)	10,217 European ancestry individuals, 5,717 individuals	NA	4q31.21	Intergenic	rs6537291-A	0.38	1E-9	(hip shape mode 2)	0.073	[0.049-0.097] unit decrease	Illumina [7191926] (imputed)	N
1694	chr4	145464073	145464074	rs6537291	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	4q31.21	Intergenic	rs6537291-A	0.402	4E-6		0.012	NR unit increase	Illumina [NR] (imputed)	N
1694	chr4	145464073	145464074	rs6537291	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs6537291-A	0.428	6E-12		0.013	unit increase	Illumina [NR] (imputed)	N
1694	chr4	145464073	145464074	rs6537291	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs6537291-A	0.427	9E-9		0.052	NR unit increase	Illumina [NR] (imputed)	N
1694	chr4	145464884	145464885	rs2130339	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	4q31.21	Intergenic	rs2130339-A	0.616	4E-6		0.011	NR unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145464884	145464885	rs2130339	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs2130339-A	0.58	2E-12		0.013	unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145464884	145464885	rs2130339	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs2130339-A	0.581	3E-9		0.052	NR unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145465460	145465461	rs36023701	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	4q31.21	Intergenic	rs36023701-C	0.614	4E-6		0.011	NR unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145465460	145465461	rs36023701	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs36023701-C	0.639	9E-17		0.016	unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145465460	145465461	rs36023701	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs36023701-C	0.637	3E-13		0.069	NR unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145465490	145465491	rs6830832	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	4q31.21	Intergenic	rs6830832-T	0.613	4E-6		0.011	NR unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145465490	145465491	rs6830832	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs6830832-T	0.576	3E-12		0.012	unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145465490	145465491	rs6830832	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs6830832-T	0.577	3E-9		0.052	NR unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145465767	145465768	rs11938745	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	4q31.21	Intergenic	rs11938745-T	0.614	4E-6		0.011	NR unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145465767	145465768	rs11938745	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs11938745-T	0.636	1E-17		0.017	unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145465767	145465768	rs11938745	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs11938745-T	0.634	1E-13		0.071	NR unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145467211	145467212	rs12506874	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	4q31.21	Intergenic	rs12506874-A	0.614	4E-6		0.011	NR unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145467211	145467212	rs12506874	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs12506874-A	0.613	7E-14		0.014	unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145467211	145467212	rs12506874	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs12506874-A	0.613	7E-10		0.054	NR unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145468790	145468791	rs7663578	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs7663578-A	0.589	3E-7		0.01	unit increase	Illumina [NR] (imputed)	N
1694	chr4	145468790	145468791	rs7663578	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs7663578-A	0.586	7E-7		0.045	NR unit increase	Illumina [NR] (imputed)	N
1694	chr4	145468844	145468845	rs7663740	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs7663740-T	0.607	2E-8		0.011	unit increase	Illumina [NR] (imputed)	N
1694	chr4	145468844	145468845	rs7663740	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs7663740-T	0.604	1E-6		0.045	NR unit increase	Illumina [NR] (imputed)	N
1694	chr4	145469372	145469373	rs62346060	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs62346060-A	0.204	3E-10		0.018	unit increase	Illumina [NR] (imputed)	N
1694	chr4	145469372	145469373	rs62346060	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs62346060-A	0.205	4E-7		0.072	NR unit increase	Illumina [NR] (imputed)	N
1694	chr4	145469967	145469968	rs6537292	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Lung function (FEV1/FVC) variance	316,614 European ancestry individuals	NA	4q31.21	HHIP	rs6537292-?	NR	2E-14				NR [5554549] (imputed)	N
1694	chr4	145469967	145469968	rs6537292	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Lung function (FEV1/FVC)	316,614 European ancestry individuals	NA	4q31.21	HHIP	rs6537292-?	NR	4E-122				NR [5554549] (imputed)	N
1694	chr4	145469967	145469968	rs6537292	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	4q31.21	Intergenic	rs6537292-T	0.387	4E-6		0.011	NR unit increase	Illumina [NR] (imputed)	N
1694	chr4	145469967	145469968	rs6537292	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs6537292-T	0.364	9E-18		0.017	unit increase	Illumina [NR] (imputed)	N
1694	chr4	145469967	145469968	rs6537292	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs6537292-T	0.366	1E-13		0.071	NR unit increase	Illumina [NR] (imputed)	N
1694	chr4	145470603	145470604	rs6828982	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs6828982-T	0.388	6E-8		0.01	unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145470603	145470604	rs6828982	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs6828982-T	0.391	5E-7		0.046	NR unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145470603	145470604	rs6828982	26423011	Wain LV	2015-09-27	Lancet Respir Med	Novel insights into the genetics of smoking behaviour, lung function, and chronic obstructive pulmonary disease (UK BiLEVE): a genetic association study in UK Biobank.	Lung function (low FEV1 vs high FEV1)	19,493 European ancestry individuals with low FEV1 measurements, 9,808 European ancestry individuals with high FEV1 measurements	NA	4q31.21	GYPA, HHIP-AS1	rs6828982-C	NR	2E-13		0.142	[0.1-0.18] unit decrease	Affymetrix [28509962] (imputed)	N
1694	chr4	145470656	145470657	rs6829184	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	4q31.21	Intergenic	rs6829184-A	0.385	3E-6		0.011	NR unit increase	Illumina [NR] (imputed)	N
1694	chr4	145470656	145470657	rs6829184	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs6829184-A	0.358	1E-16		0.016	unit increase	Illumina [NR] (imputed)	N
1694	chr4	145470656	145470657	rs6829184	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs6829184-A	0.36	5E-13		0.069	NR unit increase	Illumina [NR] (imputed)	N
1694	chr4	145471244	145471245	rs12511230	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	4q31.21	Intergenic	rs12511230-A	0.613	4E-6		0.011	NR unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145471244	145471245	rs12511230	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs12511230-A	0.64	8E-17		0.016	unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145471244	145471245	rs12511230	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs12511230-A	0.637	2E-13		0.069	NR unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145471944	145471945	rs6831503	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	4q31.21	Intergenic	rs6831503-A	0.613	4E-6		0.011	NR unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145471944	145471945	rs6831503	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs6831503-A	0.578	2E-12		0.012	unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145471944	145471945	rs6831503	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs6831503-A	0.58	3E-9		0.052	NR unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145472643	145472644	rs13107665	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs13107665-A	0.42	1E-7		0.01	unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145472643	145472644	rs13107665	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs13107665-A	0.424	3E-7		0.049	NR unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145472643	145472644	rs13107665	26423011	Wain LV	2015-09-27	Lancet Respir Med	Novel insights into the genetics of smoking behaviour, lung function, and chronic obstructive pulmonary disease (UK BiLEVE): a genetic association study in UK Biobank.	Lung function in never smokers (low FEV1 vs high FEV1)	9,745 European ancestry individuals with low FEV1 measurements, 4,902 European ancestry individuals with high FEV1 measurements	NA	4q31.21	HHIP	rs13107665-A	0.464	8E-10		1.16	[1.10-1.22]	Affymetrix [28509962] (imputed)	N
1694	chr4	145472665	145472666	rs62346062	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	4q31.21		rs62346062-?	NR	1E-14				NR [~ 8900000] (imputed)	N
1694	chr4	145472765	145472766	rs13113445	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs13113445-T	0.403	1E-7		0.01	unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145472765	145472766	rs13113445	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs13113445-T	0.406	9E-7		0.046	NR unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145472950	145472951	rs1818444	33766948	Zhu Z	2021-03-25	Eur Respir J	A large-scale genome-wide association analysis of lung function in the Chinese population identifies novel loci and highlights shared genetic etiology with obesity.	Lung function (FEV1/FVC)	100,285 Chinese ancestry individuals	NA	4q31.21		rs1818444-G	0.7	4E-12		0.034	unit decrease	Affymetrix [NR] (imputed)	N
1694	chr4	145472950	145472951	rs1818444	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs1818444-A	0.369	3E-13		0.014	unit increase	Illumina [NR] (imputed)	N
1694	chr4	145472950	145472951	rs1818444	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs1818444-A	0.369	2E-9		0.054	NR unit increase	Illumina [NR] (imputed)	N
1694	chr4	145473195	145473196	rs1828590	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	4q31.21	Intergenic	rs1828590-A	0.387	4E-6		0.011	NR unit increase	Illumina [NR] (imputed)	N
1694	chr4	145473195	145473196	rs1828590	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs1828590-A	0.366	2E-17		0.017	unit increase	Illumina [NR] (imputed)	N
1694	chr4	145473195	145473196	rs1828590	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs1828590-A	0.369	2E-13		0.071	NR unit increase	Illumina [NR] (imputed)	N
1694	chr4	145474296	145474297	rs1489760	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	4q31.21	Intergenic	rs1489760-A	0.387	4E-6		0.011	NR unit increase	Illumina [NR] (imputed)	N
1694	chr4	145474296	145474297	rs1489760	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs1489760-A	0.363	3E-17		0.017	unit increase	Illumina [NR] (imputed)	N
1694	chr4	145474296	145474297	rs1489760	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs1489760-A	0.366	3E-13		0.07	NR unit increase	Illumina [NR] (imputed)	N
1694	chr4	145474472	145474473	rs1489759	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Pre bronchodilator FEV1/FVC ratio	6,659 European ancestry current and former smoker individuals	NA	4q31.21	LOC646576, HHIP	rs1489759-?	NR	3E-8		0.01439	unit increase	Illumina [NR] (imputed)	N
1694	chr4	145474472	145474473	rs1489759	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	4q31.21	Intergenic	rs1489759-A	0.497	4E-6		0.011	NR unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145474472	145474473	rs1489759	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs1489759-A	0.467	7E-13		0.013	unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145474472	145474473	rs1489759	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs1489759-A	0.466	1E-9		0.052	NR unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145478048	145478049	rs1813903	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	4q31.21	Intergenic	rs1813903-C	0.613	4E-6		0.011	NR unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145478048	145478049	rs1813903	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs1813903-C	0.641	4E-16		0.016	unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145478048	145478049	rs1813903	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs1813903-C	0.639	1E-12		0.067	NR unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145478200	145478201	rs995758	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	4q31.21	Intergenic	rs995758-T	0.387	4E-6		0.011	NR unit increase	Illumina [NR] (imputed)	N
1694	chr4	145478200	145478201	rs995758	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs995758-T	0.359	4E-16		0.016	unit increase	Illumina [NR] (imputed)	N
1694	chr4	145478200	145478201	rs995758	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs995758-T	0.361	1E-12		0.067	NR unit increase	Illumina [NR] (imputed)	N
1694	chr4	145478661	145478662	rs12509311	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	4q31.21	Intergenic	rs12509311-T	0.387	4E-6		0.011	NR unit increase	Illumina [NR] (imputed)	N
1694	chr4	145478661	145478662	rs12509311	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs12509311-T	0.363	2E-17		0.017	unit increase	Illumina [NR] (imputed)	N
1694	chr4	145478661	145478662	rs12509311	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs12509311-T	0.365	2E-13		0.07	NR unit increase	Illumina [NR] (imputed)	N
1694	chr4	145478776	145478777	rs4834988	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs4834988-A	0.615	4E-7		0.01	unit increase	Illumina [NR] (imputed)	N
1694	chr4	145478776	145478777	rs4834988	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs4834988-A	0.612	1E-6		0.044	NR unit increase	Illumina [NR] (imputed)	N
1694	chr4	145479138	145479139	rs11100860	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs11100860-A	0.579	3E-12		0.012	unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145479138	145479139	rs11100860	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs11100860-A	0.58	4E-9		0.051	NR unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145479760	145479761	rs6537293	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic bronchitis	10,159 European ancestry cases, 440,263 European ancestry controls, 271 East Asian ancestry cases, 161,803 East Asian ancestry controls	NA	4q31.21		rs6537293-G	NR	1E-9		0.0905	[0.061-0.12] unit decrease	Affymetrix, Illumina [25840074] (imputed)	N
1694	chr4	145479760	145479761	rs6537293	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	4q31.21	NR	rs6537293-G	0.39	3E-24		0.84	[0.81-0.87]	Affymetrix [9886854] (imputed)	N
1694	chr4	145479760	145479761	rs6537293	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	4q31.21	NR	rs6537293-G	0.39	5E-40			[NR]	Affymetrix [9886854] (imputed)	N
1694	chr4	145479760	145479761	rs6537293	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	4q31.21	NR	rs6537293-G	0.39	2E-37		0.85	[0.83-0.87]	Affymetrix [9886854] (imputed)	N
1694	chr4	145479760	145479761	rs6537293	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	4q31.21	NR	rs6537293-G	0.39	9E-40			[NR]	Affymetrix [9886854] (imputed)	N
1694	chr4	145479760	145479761	rs6537293	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in non-current smokers	16,488 European ancestry cases, 169,688 European ancestry controls	NA	4q31.21	NR	rs6537293-G	0.39	1E-37		0.85	[0.83-0.87]	Affymetrix [9886854] (imputed)	N
1694	chr4	145479760	145479761	rs6537293	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in never smokers	8,631 European ancestry cases, 120,544 European ancestry controls	NA	4q31.21	NR	rs6537293-G	0.39	2E-24		0.84	[0.81-0.87]	Affymetrix [9886854] (imputed)	N
1694	chr4	145479760	145479761	rs6537293	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in ever smokers	12,446 European ancestry cases, 59,145 European ancestry controls	NA	4q31.21	NR	rs6537293-G	0.39	1E-18		0.87	[0.85-0.9]	Affymetrix [9886854] (imputed)	N
1694	chr4	145479760	145479761	rs6537293	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	4q31.21	Intergenic	rs6537293-A	0.616	4E-6		0.011	NR unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145479760	145479761	rs6537293	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs6537293-A	0.619	7E-14		0.013	unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145479760	145479761	rs6537293	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs6537293-A	0.618	9E-10		0.054	NR unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145479762	145479763	rs6537294	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	4q31.21	Intergenic	rs6537294-A	0.387	4E-6		0.011	NR unit increase	Illumina [NR] (imputed)	N
1694	chr4	145479762	145479763	rs6537294	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs6537294-A	0.384	9E-14		0.013	unit increase	Illumina [NR] (imputed)	N
1694	chr4	145479762	145479763	rs6537294	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs6537294-A	0.384	1E-9		0.053	NR unit increase	Illumina [NR] (imputed)	N
1694	chr4	145479879	145479880	rs6842889	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	4q31.21	LOC105377462	rs6842889-T	0.61	5E-9				NR [> 9500000] (imputed)	N
1694	chr4	145479879	145479880	rs6842889	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	4q31.21	Intergenic	rs6842889-T	0.617	3E-6		0.011	NR unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145479879	145479880	rs6842889	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs6842889-T	0.646	4E-16		0.016	unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145479879	145479880	rs6842889	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs6842889-T	0.643	9E-13		0.068	NR unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145480339	145480340	rs10519717	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	4q31.21	NR	rs10519717-C	0.147158	2E-10		0.0276689	[0.019-0.036] unit decrease	NR [19129689] (imputed)	N
1694	chr4	145480779	145480780	rs1828591	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	4q31.21	Intergenic	rs1828591-A	0.502	4E-6		0.011	NR unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145480779	145480780	rs1828591	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs1828591-A	0.534	3E-12		0.012	unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145480779	145480780	rs1828591	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs1828591-A	0.535	4E-9		0.051	NR unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145480779	145480780	rs1828591	19300482	Pillai SG	2009-03-20	PLoS Genet	A genome-wide association study in chronic obstructive pulmonary disease (COPD): identification of two major susceptibility loci.	Chronic obstructive pulmonary disease	823 cases, 810 controls	1,891 European ancestry individuals from 606 families, 389 European ancestry cases, 472 European ancestry controls, 949 individuals from 127 families	4q31.21	HHIP	rs1828591-?	NR	1E-7		1.38	[1.17-1.63]	Illumina [493609]	N
1694	chr4	145482242	145482243	rs28626624	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	4q31.21	Intergenic	rs28626624-T	0.387	4E-6		0.011	NR unit increase	Illumina [NR] (imputed)	N
1694	chr4	145482242	145482243	rs28626624	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs28626624-T	0.362	1E-17		0.017	unit increase	Illumina [NR] (imputed)	N
1694	chr4	145482242	145482243	rs28626624	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs28626624-T	0.365	2E-13		0.071	NR unit increase	Illumina [NR] (imputed)	N
1694	chr4	145482546	145482547	rs1565330	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	4q31.21	Intergenic	rs1565330-T	0.387	4E-6		0.011	NR unit increase	Illumina [NR] (imputed)	N
1694	chr4	145482546	145482547	rs1565330	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs1565330-T	0.362	1E-17		0.017	unit increase	Illumina [NR] (imputed)	N
1694	chr4	145482546	145482547	rs1565330	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs1565330-T	0.365	2E-13		0.071	NR unit increase	Illumina [NR] (imputed)	N
1694	chr4	145484637	145484638	rs12510044	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs12510044-C	0.385	3E-7		0.01	unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145484637	145484638	rs12510044	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs12510044-C	0.388	1E-6		0.044	NR unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145484922	145484923	rs1980056	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	4q31.21	Intergenic	rs1980056-A	0.386	4E-6		0.011	NR unit increase	Illumina [NR] (imputed)	N
1694	chr4	145484922	145484923	rs1980056	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs1980056-A	0.362	1E-17		0.017	unit increase	Illumina [NR] (imputed)	N
1694	chr4	145484922	145484923	rs1980056	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs1980056-A	0.365	2E-13		0.071	NR unit increase	Illumina [NR] (imputed)	N
1694	chr4	145485737	145485738	rs1980057	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Pre bronchodilator FEV1/FVC ratio	6,659 European ancestry current and former smoker individuals	NA	4q31.21	LOC646576, HHIP	rs1980057-?	NR	2E-8		0.0146	unit increase	Illumina [NR] (imputed)	N
1694	chr4	145485737	145485738	rs1980057	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	4q31.21	Intergenic	rs1980057-T	0.503	4E-6		0.011	NR unit increase	Illumina [NR] (imputed)	N
1694	chr4	145485737	145485738	rs1980057	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs1980057-T	0.581	1E-17		0.017	unit increase	Illumina [NR] (imputed)	N
1694	chr4	145485737	145485738	rs1980057	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs1980057-T	0.58	1E-13		0.071	NR unit increase	Illumina [NR] (imputed)	N
1694	chr4	145485737	145485738	rs1980057	23284291	Hancock DB	2012-12-20	PLoS Genet	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (smoking interaction)	50,047 European ancestry individuals	NA	4q31.21	HHIP	rs1980057-?	NR	5E-18	(FEV1/FVC, Ever-smoking)			NR [~ 2500000] (imputed)	N
1694	chr4	145485737	145485738	rs1980057	20010835	Hancock DB	2009-12-13	Nat Genet	Meta-analyses of genome-wide association studies identify multiple loci associated with pulmonary function.	Pulmonary function	20,890 European ancestry individuals	16,178 European ancestry individuals	4q31.21	HHIP	rs1980057-T	0.40	3E-20	(FEV1/FVC)	0.52	[NR] % increase	Affymetrix, Illumina [2534500] (imputed)	N
1694	chr4	145485914	145485915	rs7655625	30940143	Zhu Z	2019-04-02	Respir Res	Genetic overlap of chronic obstructive pulmonary disease and cardiovascular disease-related traits: a large-scale genome-wide cross-trait analysis.	Chronic obstructive pulmonary disease or resting heart rate (pleiotropy)	12,550 European and unknown ancestry chronic obstructive pulmonary disease cases, 46,368 European and unknown ancestry controls, 458,969 European ancestry individuals	NA	4q31.21	ANAPC10, HHIP, HHIP-AS1	rs7655625-?	NR	2E-19				Affymetrix [up to 7325140] (imputed)	N
1694	chr4	145485914	145485915	rs7655625	30940143	Zhu Z	2019-04-02	Respir Res	Genetic overlap of chronic obstructive pulmonary disease and cardiovascular disease-related traits: a large-scale genome-wide cross-trait analysis.	Chronic obstructive pulmonary disease or high blood pressure (pleiotropy)	12,550 European and unknown ancestry chronic obstructive pulmonary disease cases, 46,368 European and unknown ancestry controls, 144,793 European ancestry high blood pressure cases, 313,761 European ancestry controls	NA	4q31.21	ANAPC10, HHIP, HHIP-AS1	rs7655625-?	NR	1E-18				Affymetrix [up to 7325140] (imputed)	N
1694	chr4	145485914	145485915	rs7655625	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Pre bronchodilator FEV1/FVC ratio	6,659 European ancestry current and former smoker individuals	NA	4q31.21	LOC646576, HHIP	rs7655625-?	NR	2E-8		0.01471	unit increase	Illumina [NR] (imputed)	N
1694	chr4	145485914	145485915	rs7655625	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	4q31.21	Intergenic	rs7655625-T	0.497	3E-6		0.011	NR unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145485914	145485915	rs7655625	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs7655625-T	0.43	6E-14		0.013	unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145485914	145485915	rs7655625	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs7655625-T	0.43	1E-9		0.053	NR unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145486388	145486389	rs13118928	29478026	Shahin MH	2018-02-24	J Am Heart Assoc	Genome-Wide Association Approach Identified Novel Genetic Predictors of Heart Rate Response to ?-Blockers.	Heart rate response to beta blockers (atenolol add-on therapy)	198 European American hypertensive individuals, 127 African American hypertensive individuals	NA	4q31.21	NR	rs13118928-A	0.87	9E-6	(AA)	5.44	[3.15-7.73] bpm decrease	Illumina [at least 1100000] (imputed)	N
1694	chr4	145486388	145486389	rs13118928	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	4q31.21	Intergenic	rs13118928-A	0.502	3E-6		0.011	NR unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145486388	145486389	rs13118928	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs13118928-A	0.587	3E-16		0.016	unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145486388	145486389	rs13118928	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs13118928-A	0.586	1E-12		0.067	NR unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145486388	145486389	rs13118928	20173748	Cho MH	2010-02-21	Nat Genet	Variants in FAM13A are associated with chronic obstructive pulmonary disease.	Chronic obstructive pulmonary disease	2,940 European ancestry cases, 1,380 European ancestry controls	502 European ancestry cases, 504 European ancestry controls, 1,110 cases, 2,698 controls	4q31.21	HHIP	rs13118928-?	0.40	5E-7		1.25	[1.14-1.37]	Illumina [499578]	N
1694	chr4	145487933	145487934	rs6537296	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	4q31.21	Intergenic	rs6537296-A	0.613	3E-6		0.011	NR unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145487933	145487934	rs6537296	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs6537296-A	0.63	2E-15		0.014	unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145487933	145487934	rs6537296	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs6537296-A	0.628	2E-10		0.057	NR unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145488333	145488334	rs1542725	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	4q31.21	Intergenic	rs1542725-T	0.387	3E-6		0.011	NR unit increase	Illumina [NR] (imputed)	N
1694	chr4	145488333	145488334	rs1542725	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs1542725-T	0.362	1E-17		0.017	unit increase	Illumina [NR] (imputed)	N
1694	chr4	145488333	145488334	rs1542725	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs1542725-T	0.365	2E-13		0.07	NR unit increase	Illumina [NR] (imputed)	N
1694	chr4	145489096	145489097	rs13113591	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	4q31.21	Intergenic	rs13113591-T	0.37	4E-6		0.012	NR unit increase	Illumina [NR] (imputed)	N
1694	chr4	145489096	145489097	rs13113591	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs13113591-T	0.349	1E-17		0.018	unit increase	Illumina [NR] (imputed)	N
1694	chr4	145489096	145489097	rs13113591	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs13113591-T	0.351	9E-14		0.074	NR unit increase	Illumina [NR] (imputed)	N
1694	chr4	145489097	145489098	rs13140176	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	4q31.21	HHIP	rs13140176-A	0.61	4E-59		1.18	[1.16-1.20]	Affymetrix, Illumina [6224355] (imputed)	N
1694	chr4	145489097	145489098	rs13140176	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	4q31.21	Intergenic	rs13140176-A	0.631	3E-6		0.012	NR unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145489097	145489098	rs13140176	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs13140176-A	0.652	1E-17		0.018	unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145489097	145489098	rs13140176	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs13140176-A	0.65	1E-13		0.074	NR unit decrease	Illumina [NR] (imputed)	N
1694	chr4	145489327	145489328	rs11940733	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	4q31.21	Intergenic	rs11940733-A	0.386	3E-6		0.011	NR unit increase	Illumina [NR] (imputed)	N
1694	chr4	145489327	145489328	rs11940733	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs11940733-A	0.361	1E-17		0.017	unit increase	Illumina [NR] (imputed)	N
1694	chr4	145489327	145489328	rs11940733	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs11940733-A	0.364	2E-13		0.07	NR unit increase	Illumina [NR] (imputed)	N
1695	chr4	145490358	145490359	rs12501071	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	4q31.21	Intergenic	rs12501071-T	0.394	1E-6		0.012	NR unit increase	Illumina [NR] (imputed)	N
1695	chr4	145490358	145490359	rs12501071	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs12501071-T	0.409	7E-14		0.013	unit increase	Illumina [NR] (imputed)	N
1695	chr4	145490358	145490359	rs12501071	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs12501071-T	0.409	2E-9		0.053	NR unit increase	Illumina [NR] (imputed)	N
1695	chr4	145491280	145491281	rs1512288	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	4q31.21	Intergenic	rs1512288-A	0.498	1E-6		0.012	NR unit increase	Illumina [NR] (imputed)	N
1695	chr4	145491280	145491281	rs1512288	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs1512288-A	0.451	8E-14		0.013	unit increase	Illumina [NR] (imputed)	N
1695	chr4	145491280	145491281	rs1512288	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs1512288-A	0.451	2E-9		0.052	NR unit increase	Illumina [NR] (imputed)	N
1695	chr4	145492002	145492003	rs6817273	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	4q31.21	Intergenic	rs6817273-T	0.503	1E-6		0.012	NR unit decrease	Illumina [NR] (imputed)	N
1695	chr4	145492002	145492003	rs6817273	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs6817273-T	0.584	5E-17		0.016	unit decrease	Illumina [NR] (imputed)	N
1695	chr4	145492002	145492003	rs6817273	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs6817273-T	0.583	2E-12		0.066	NR unit decrease	Illumina [NR] (imputed)	N
1695	chr4	145496940	145496941	rs2175586	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	4q31.21	KRT18P51	rs2175586-A	NR	4E-11		0.0402492	[0.028-0.052] unit decrease	Affymetrix [321016] (imputed)	N
1695	chr4	145496940	145496941	rs2175586	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	4q31.21	KRT18P51	rs2175586-A	NR	2E-8		0.0373814	[0.024-0.05] unit decrease	Affymetrix [323123] (imputed)	N
1695	chr4	145498411	145498412	rs10029430	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs10029430-A	0.616	3E-7		0.01	unit increase	Illumina [NR] (imputed)	N
1695	chr4	145499027	145499028	rs17019496	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Daytime sleep phenotypes	874 European ancestry individuals	NA	4q31.21	KRT18P51, HHIP-AS1, HHIP	rs17019496-A	NR	2E-6	(daytime resting)	1.185	[0.7-1.67] unit decrease	Affymetrix [7141204] (imputed)	N
1695	chr4	145502028	145502029	rs6537297	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs6537297-T	0.62	6E-8		0.01	unit increase	Illumina [NR] (imputed)	N
1695	chr4	145502028	145502029	rs6537297	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs6537297-T	0.617	8E-7		0.045	NR unit increase	Illumina [NR] (imputed)	N
1695	chr4	145505637	145505638	rs10013495	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	4q31.21		rs10013495-?	NR	4E-11				NR [~ 8900000] (imputed)	N
1695	chr4	145506455	145506456	rs13141641	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	4q31.21	HHIP-AS1	rs13141641-T	0.601	7E-126		0.0614	[0.056-0.066] unit decrease	Affymetrix [19819130] (imputed)	N
1695	chr4	145506455	145506456	rs13141641	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	4q31.21	HHIP-AS1	rs13141641-T	0.601	4E-184		0.0704	[0.066-0.075] unit decrease	Affymetrix [19819130] (imputed)	N
1695	chr4	145506455	145506456	rs13141641	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	4q31.21	HHIP-AS1	rs13141641-T	0.601	4E-48		0.0348	[0.03-0.04] unit decrease	Affymetrix [19819130] (imputed)	N
1695	chr4	145506455	145506456	rs13141641	28166215	Hobbs BD	2017-02-06	Nat Genet	Genetic loci associated with chronic obstructive pulmonary disease overlap with loci for lung function and pulmonary fibrosis.	Chronic obstructive pulmonary disease	11,157 European ancestry cases, 36,699 European ancestry controls, 1,142 African American cases, 2,380 African American controls, 199 Korean ancestry cases, 6,741 Korean ancestry controls, 52 Hispanic cases, 548 Hispanic controls.	12,051 European ancestry cases, 11,111 European ancestry controls, 153 Korean ancestry cases, 205 Korean ancestry controls.	4q31.21	HHIP	rs13141641-T	0.59	9E-41		1.22	[1.19,1.26]	Affymetrix, Illumina [NR] (imputed)	N
1695	chr4	145506455	145506456	rs13141641	27669027	Boueiz A	2016-09-26	Am J Respir Crit Care Med	Genome-Wide Association Study of the Genetic Determinants of Emphysema Distribution.	Emphysema distribution in smoking	7,039 European ancestry individuals, 2,955 African American individuals, 1538 individuals	NA	4q31.21	HHIP	rs13141641-T	0.63	2E-11	(diff950)	0.09	NR unit increase	Illumina [at least 10657975] (imputed)	N
1695	chr4	145506455	145506456	rs13141641	27669027	Boueiz A	2016-09-26	Am J Respir Crit Care Med	Genome-Wide Association Study of the Genetic Determinants of Emphysema Distribution.	Emphysema distribution in smoking	7,039 European ancestry individuals, 2,955 African American individuals, 1538 individuals	NA	4q31.21	HHIP	rs13141641-T	0.62	6E-18	(ratio950)	0.12	NR unit increase	Illumina [at least 10657975] (imputed)	N
1695	chr4	145506455	145506456	rs13141641	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	4q31.21	Intergenic	rs13141641-T	0.608	3E-7		0.012	NR unit decrease	Illumina [NR] (imputed)	N
1695	chr4	145506455	145506456	rs13141641	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs13141641-T	0.632	1E-19		0.018	unit decrease	Illumina [NR] (imputed)	N
1695	chr4	145506455	145506456	rs13141641	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs13141641-T	0.63	4E-14		0.072	NR unit decrease	Illumina [NR] (imputed)	N
1695	chr4	145506455	145506456	rs13141641	26030696	Cho MH	2015-06-01	Am J Respir Crit Care Med	A Genome-Wide Association Study of Emphysema and Airway Quantitative Imaging Phenotypes.	Emphysema imaging phenotypes	5,385 European ancestry chronic obstructive pulmonary disease cases, 901 African American chronic obstructive pulmonary disease cases, 3,613 European ancestry controls, 2,132 African American controls	NA	4q31.21	HHIP	rs13141641-T	NR	8E-10	(Perc15, All)	2.2	[1.44-2.96] unit decrease	Illumina [7600000] (imputed)	N
1695	chr4	145506455	145506456	rs13141641	26030696	Cho MH	2015-06-01	Am J Respir Crit Care Med	A Genome-Wide Association Study of Emphysema and Airway Quantitative Imaging Phenotypes.	Emphysema imaging phenotypes	5,385 European ancestry chronic obstructive pulmonary disease cases, 901 African American chronic obstructive pulmonary disease cases, 3,613 European ancestry controls, 2,132 African American controls	NA	4q31.21	HHIP	rs13141641-T	NR	2E-12	(%LAA-950, All)	0.12	[0.075-0.165] unit increase	Illumina [7600000] (imputed)	N
1695	chr4	145506455	145506456	rs13141641	25241909	Lee JH	2014-09-21	Respir Res	Genetic susceptibility for chronic bronchitis in chronic obstructive pulmonary disease.	Chronic bronchitis and chronic obstructive pulmonary disease	up to 1,662 European ancestry cases, up to 3,520 European ancestry smoker controls, 182 African American cases, 1,749 African American smoker controls	NA	4q31.21	HHIP-AS1	rs13141641-T	0.58	3E-6	(EA)	1.27	[NR]	Illumina [NR] (imputed)	N
1695	chr4	145506455	145506456	rs13141641	24621683	Cho MH	2014-02-07	Lancet Respir Med	Risk loci for chronic obstructive pulmonary disease: a genome-wide association study and meta-analysis.	Chronic obstructive pulmonary disease (severe)	3,145 European ancestry cases, 3,955 European ancestry controls, 352 African American cases, 1,749 African American controls	2,651 cases and their relatives	4q31.21	HHIP	rs13141641-T	0.59	4E-15		1.39	[1.28-1.51]	Illumina [up to 701491] (imputed)	N
1695	chr4	145506455	145506456	rs13141641	24621683	Cho MH	2014-02-07	Lancet Respir Med	Risk loci for chronic obstructive pulmonary disease: a genome-wide association study and meta-analysis.	Chronic obstructive pulmonary disease (moderate to severe)	5,812 European ancestry cases, 3,955 European ancestry controls, 821 African American cases, 1,749 African American controls	2,651 cases and their relatives	4q31.21	HHIP	rs13141641-T	0.59	2E-12		1.27	[1.19-1.36]	Illumina [up to 701491] (imputed)	N
1695	chr4	145506455	145506456	rs13141641	22080838	Cho MH	2011-11-11	Hum Mol Genet	A genome-wide association study of COPD identifies a susceptibility locus on chromosome 19q13.	Chronic obstructive pulmonary disease	3,499 European ancestry cases, 1,922 European ancestry controls	983 cases, 1,876 sibling controls	4q31.21	HHIP	rs13141641-?	NR	3E-7		1.32	[1.14-1.54]	Illumina [797983]	N
1695	chr4	145506870	145506871	rs6537298	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs6537298-T	0.572	2E-10		0.011	unit increase	Illumina [NR] (imputed)	N
1695	chr4	145506870	145506871	rs6537298	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs6537298-T	0.572	3E-9		0.051	NR unit increase	Illumina [NR] (imputed)	N
1695	chr4	145507956	145507957	rs76722643	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	4q31.21	KRT18P51	rs76722643-A	NR	6E-17		0.0437769	[0.034-0.054] unit increase	Affymetrix [323123] (imputed)	N
1695	chr4	145511039	145511040	rs11724319	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs11724319-A	0.773	2E-8		0.015	unit increase	Illumina [NR] (imputed)	N
1695	chr4	145511039	145511040	rs11724319	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs11724319-A	0.773	2E-6		0.062	NR unit increase	Illumina [NR] (imputed)	N
1695	chr4	145511874	145511875	rs7670758	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs7670758-A	0.626	6E-9		0.011	unit decrease	Illumina [NR] (imputed)	N
1695	chr4	145511874	145511875	rs7670758	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs7670758-A	0.622	1E-6		0.045	NR unit decrease	Illumina [NR] (imputed)	N
1695	chr4	145513178	145513179	rs7700244	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	4q31.21	KRT18P51	rs7700244-T	NR	1E-8		0.0292876	[0.019-0.039] unit increase	Affymetrix [323858] (imputed)	N
1695	chr4	145515768	145515769	rs1542726	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	4q31.21	KRT18P51	rs1542726-A	NR	1E-14		0.0239999	[0.018-0.03] unit decrease	Affymetrix [323123] (imputed)	N
1695	chr4	145515768	145515769	rs1542726	33888516	Zheng T	2021-04-22	Gut	Genome-wide analysis of 944 133 individuals provides insights into the etiology of haemorrhoidal disease.	Haemorrhoidal disease	218,920 European ancestry cases, 725,213 European ancestry controls	NA	4q31.21	HHIP	rs1542726-?	0.4246	3E-12		1.03	[1.02-1.04]	Affymetrix, Illumina [8494288] (imputed)	N
1695	chr4	145515768	145515769	rs1542726	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs1542726-A	0.372	3E-9		0.012	unit decrease	Illumina [NR] (imputed)	N
1695	chr4	145515768	145515769	rs1542726	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs1542726-A	0.376	7E-7		0.047	NR unit decrease	Illumina [NR] (imputed)	N
1695	chr4	145516377	145516378	rs1489765	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs1489765-T	0.614	2E-8		0.011	unit increase	Illumina [NR] (imputed)	N
1695	chr4	145516377	145516378	rs1489765	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.21	Intergenic	rs1489765-T	0.61	4E-7		0.047	NR unit increase	Illumina [NR] (imputed)	N
1695	chr4	145516737	145516737	rs11407396	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	4q31.21	NR	rs11407396-CA	0.521742	7E-10		0.0420836	[0.029-0.056] unit increase	Affymetrix [17914406] (imputed)	N
1695	chr4	145516830	145516831	rs570992006	33961016	Moksnes MR	2021-05-07	Hum Mol Genet	Genome-wide association study of cardiac troponin I in the general population.	Change in high-sensitivity cardiac troponin I concentration	5,178 European ancestry individuals	NA	4q31.21		rs570992006-T	0.001	3E-7		1.63	[1-2.26] unit increase	Illumina [21233433] (imputed)	N
1695	chr4	145517577	145517578	rs2353397	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	4q31.21	KRT18P51	rs2353397-C	NR	7E-9		0.0185364	[0.012-0.025] unit decrease	Affymetrix [323858] (imputed)	N
1695	chr4	145517577	145517578	rs2353397	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	4q31.21	KRT18P51	rs2353397-C	NR	5E-16		0.0229079	[0.017-0.028] unit decrease	Affymetrix [321016] (imputed)	N
1695	chr4	145517577	145517578	rs2353397	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	4q31.21	KRT18P51	rs2353397-C	NR	5E-26		0.0323573	[0.026-0.038] unit decrease	Affymetrix [323123] (imputed)	N
1695	chr4	145521188	145521189	rs10023833	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	4q31.21	KRT18P51	rs10023833-C	NR	2E-9		0.019315	[0.013-0.026] unit increase	Affymetrix [323858] (imputed)	N
1695	chr4	145521188	145521189	rs10023833	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	4q31.21	KRT18P51	rs10023833-C	NR	5E-20		0.0260104	[0.02-0.032] unit increase	Affymetrix [321016] (imputed)	N
1695	chr4	145521188	145521189	rs10023833	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	4q31.21	KRT18P51	rs10023833-C	NR	5E-28		0.0338622	[0.028-0.04] unit increase	Affymetrix [323123] (imputed)	N
1695	chr4	145522662	145522663	rs1994812	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	4q31.21	KRT18P51	rs1994812-A	NR	4E-12		0.03918	[0.028-0.05] unit decrease	Affymetrix [323123] (imputed)	N
1695	chr4	145522757	145522758	rs2353398	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	4q31.21	HHIP	rs2353398-?	NR	2E-9	(Conditioned on rs7689420)		[NR]	Affymetrix, Illumina [2834208] (imputed)	N
1695	chr4	145533943	145533944	rs13125844	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	4q31.21	HHIP-AS1	rs13125844-G	NR	1E-9		0.0503985	[0.034-0.067] unit decrease	Affymetrix [323123] (imputed)	N
1695	chr4	145534854	145534855	rs977720	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	4q31.21	HHIP-AS1	rs977720-A	NR	8E-10		0.0723739	[0.049-0.095] unit decrease	Affymetrix [321016] (imputed)	N
1695	chr4	145536335	145536336	rs7692554	34270706	Lin E	2021-07-16	Hum Mol Genet	Genome-wide association study in the Taiwan biobank identifies four novel genes for human height: NABP2, RASA2, RNF41 and SLC39A5.	Height	14,571 Taiwanese Han Chinese ancestry individuals	20,506 Taiwanese Han Chinese ancestry individuals	4q31.21	HHIP-LOC105377462	rs7692554-?	NR	4E-8		0.44	[0.28-0.6] unit increase	Affymetrix [5682219] (imputed)	N
1695	chr4	145537747	145537748	rs13327924	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	4q31.21	HHIP-AS1	rs13327924-A	NR	4E-8		0.0286693	[0.018-0.039] unit decrease	Affymetrix [321114] (imputed)	N
1695	chr4	145537849	145537850	rs11947381	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex x age interaction (4df test)	up to 43,776 European ancestry men aged <50, up to 50,526 European ancestry women aged <50, up to 69,944 European ancestry men aged >50, up to 88,129 European ancestry women aged >50	NA	4q31.21	HHIP-AS1, GYPA, ANAPC10, ABCE1	rs11947381-T	0.463079500710578	2E-6				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1695	chr4	145537849	145537850	rs11947381	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	4q31.21	HHIP-AS1, GYPA, ANAPC10, ABCE1	rs11947381-T	0.463079500710578	2E-8		0.01867371	units increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1695	chr4	145544835	145544836	rs17776795	31097437	Plotnikov D	2019-05-16	Br J Ophthalmol	Association between birth weight and refractive error in adulthood: a Mendelian randomisation study.	Birth weight	188,039 European ancestry individuals	NA	4q31.21	NR	rs17776795-A	0.42	6E-19		0.029	[0.023-0.035] z score decrease	Affymetrix [up to 10400000] (imputed)	N
1695	chr4	145548932	145548933	rs2575570	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	4q31.21	HHIP-AS1	rs2575570-T	NR	3E-18		0.0502713	[0.039-0.062] unit decrease	Affymetrix [321016] (imputed)	N
1695	chr4	145548932	145548933	rs2575570	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	4q31.21	NR	rs2575570-?	NR	4E-36				Affymetrix [NR]	N
1695	chr4	145548938	145548939	rs34377763	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	4q31.21	HHIP-AS1	rs34377763-A	NR	4E-8		0.0415088	[0.027-0.056] unit decrease	Affymetrix [321114] (imputed)	N
1695	chr4	145548938	145548939	rs34377763	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	4q31.21	HHIP-AS1	rs34377763-A	NR	2E-15		0.059438	[0.045-0.074] unit decrease	Affymetrix [321016] (imputed)	N
1695	chr4	145548938	145548939	rs34377763	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	4q31.21	GYPA, HHIP-AS1	rs34377763-?	NR	1E-13		0.024573065	[0.018-0.031] unit decrease	Illumina [27896057] (imputed)	N
1695	chr4	145557650	145557651	rs11100862	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	4q31.21	NR	rs11100862-A	0.452	4E-6	(IFNGR1_of_monocytes)			Illumina [5084123] (imputed)	N
1695	chr4	145560165	145560166	rs62346126	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	4q31.21		rs62346126-A	NR	7E-161		0.0417	[0.039-0.045] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1695	chr4	145560165	145560166	rs62346126	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	4q31.21	HHIP-AS1	rs62346126-C	NR	2E-17		0.0337177	[0.026-0.041] unit decrease	Affymetrix [321114] (imputed)	N
1695	chr4	145560165	145560166	rs62346126	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	4q31.21		rs62346126-?	NR	1E-300				NR [~ 8900000] (imputed)	N
1695	chr4	145565115	145565116	rs7680661	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	4q31.21	HHIP	rs7680661-G	0.172124	7E-35		0.04089	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1695	chr4	145565115	145565116	rs7680661	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	4q31.21	HHIP	rs7680661-G	0.172124	2E-47	(females)	0.06698	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1695	chr4	145565115	145565116	rs7680661	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	4q31.21	HHIP	rs7680661-G	0.172124	2E-28		0.03625	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1695	chr4	145565115	145565116	rs7680661	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	4q31.21	HHIP	rs7680661-G	0.172124	1E-36	(females)	0.05799	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1695	chr4	145565115	145565116	rs7680661	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	4q31.21	HHIP	rs7680661-G	0.172124	1E-6	(females)	0.02332	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1695	chr4	145565825	145565826	rs6845999	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	4q31.21	NR	rs6845999-?	NR	3E-8		0.03642157	[0.024-0.049] unit increase	Illumina [34656550] (imputed)	N
1695	chr4	145565825	145565826	rs6845999	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	4q31.21	LOC646576, HHIP	rs6845999-T	0.431122	2E-24		0.026255	[0.021-0.031] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1695	chr4	145565825	145565826	rs6845999	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	4q31.21	HHIP	rs6845999-T	0.22	4E-14		0.037	[0.021-0.053] unit increase	Affymetrix, Illumina [2704730] (imputed)	N
1695	chr4	145566246	145566247	rs201461344	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Chronic sinus infection	5,291 European ancestry cases, 79,622 European ancestry controls	NA	4q31.21	NR	rs201461344-?	NR	3E-6		0.2994	[0.18-0.42] unit decrease	Illumina [at least 560000] (imputed)	N
1695	chr4	145566847	145566848	rs13125694	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	4q31.21		rs13125694-T	0.191937	6E-27		0.0298493	[0.024-0.035] unit increase	Illumina [13479295] (imputed)	N
1695	chr4	145566847	145566848	rs13125694	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	4q31.21	HHIP-AS1	rs13125694-T	NR	5E-12		0.0223721	[0.016-0.029] unit increase	Affymetrix [323858] (imputed)	N
1695	chr4	145566847	145566848	rs13125694	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	4q31.21	HHIP-AS1	rs13125694-T	NR	6E-54		0.0478961	[0.042-0.054] unit increase	Affymetrix [323123] (imputed)	N
1695	chr4	145566847	145566848	rs13125694	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	4q31.21	HHIP-AS1	rs13125694-?	NR	1E-29		0.04457814	[0.037-0.052] unit increase	Illumina [27896057] (imputed)	N
1695	chr4	145566863	145566864	rs13106087	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	4q31.21	HHIP-AS1	rs13106087-T	NR	1E-52		0.0622935	[0.054-0.07] unit decrease	Affymetrix [323123] (imputed)	N
1695	chr4	145566863	145566864	rs13106087	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	4q31.21	HHIP-AS1	rs13106087-T	0.1705	5E-15		0.0707	[0.053-0.088] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1695	chr4	145567470	145567471	rs12507427	31053729	Styrkarsdottir U	2019-05-03	Nat Commun	GWAS of bone size yields twelve loci that also affect height, BMD, osteoarthritis or fractures.	Hip bone size	28,900 European ancestry individuals	7,912 European ancestry individuals, 5,699 East Asian ancestry individuals	4q31.21	HHIP	rs12507427-A	0.43146	5E-9		0.043	NR unit increase	Illumina [33400000] (imputed)	N
1695	chr4	145567470	145567471	rs12507427	31053729	Styrkarsdottir U	2019-05-03	Nat Commun	GWAS of bone size yields twelve loci that also affect height, BMD, osteoarthritis or fractures.	Femoral neck size	28,954 European ancestry individuals	9,383 European ancestry individuals, 6,351 East Asian ancestry individuals	4q31.21	HHIP	rs12507427-A	0.431	8E-14		0.054	[0.007-0.036] unit increase	Illumina [33400000] (imputed)	N
1695	chr4	145568351	145568352	rs7689420	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	4q31.21	HHIP	rs7689420-T	0.1688	1E-76		0.0466	[0.042-0.051] unit decrease	Affymetrix [18391927] (imputed)	N
1695	chr4	145568351	145568352	rs7689420	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	4q31.21	NR	rs7689420-?	NR	1E-37				Affymetrix [~ 8270000] (imputed)	N
1695	chr4	145568351	145568352	rs7689420	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	4q31.21	NR	rs7689420-?	NR	8E-9		0.03659492	[0.024-0.049] unit increase	Illumina [34656550] (imputed)	N
1695	chr4	145568351	145568352	rs7689420	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	4q31.21	HHIP	rs7689420-C	0.8186	2E-10		0.0293	[0.02-0.038] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1695	chr4	145568351	145568352	rs7689420	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	4q31.21	HHIP	rs7689420-C	0.8186	1E-9	(women)	0.0405	[0.028-0.053] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1695	chr4	145568351	145568352	rs7689420	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	4q31.21	HHIP	rs7689420-C	0.8186	2E-7		0.0276	[0.017-0.038] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1695	chr4	145568351	145568352	rs7689420	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	4q31.21	HHIP	rs7689420-C	0.8054	3E-8	(women)	0.042	[0.027-0.057] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1695	chr4	145568351	145568352	rs7689420	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	4q31.21	HHIP	rs7689420-?	0.8186	6E-9	(women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1695	chr4	145568351	145568352	rs7689420	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	4q31.21	HHIP	rs7689420-?	0.8186	1E-9				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1695	chr4	145568351	145568352	rs7689420	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	4q31.21	HHIP	rs7689420-C	0.84	4E-21		1.33	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
1695	chr4	145568351	145568352	rs7689420	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	4q31.21	HHIP	rs7689420-T	0.16	6E-51		0.073	[NR] unit decrease	Affymetrix, Illumina [2834208] (imputed)	N
1695	chr4	145568844	145568844	rs147015513	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	4q31.21	HHIP-AS1, HHIP	rs147015513-TTAAC	NR	6E-18		0.0269073	[0.021-0.033] unit increase	Affymetrix [321114] (imputed)	N
1695	chr4	145572045	145572046	rs7675744	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	4q31.21	HHIP-AS1, HHIP	rs7675744-C	NR	2E-50		0.0423698	[0.037-0.048] unit increase	Affymetrix [321016] (imputed)	N
1695	chr4	145574195	145574196	rs1844428	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	4q31.21		rs1844428-A	0.867	8E-11		0.11	[0.07-0.14] % increase	Affymetrix [NR] (imputed)	N
1695	chr4	145574843	145574844	rs1812175	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	4q31.21	HHIP-AS1, HHIP	rs1812175-A	NR	5E-17		0.0317843	[0.024-0.039] unit decrease	Affymetrix [321114] (imputed)	N
1695	chr4	145574843	145574844	rs1812175	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	4q31.21	HHIP-AS1, HHIP	rs1812175-A	NR	6E-58		0.0601813	[0.053-0.068] unit decrease	Affymetrix [321016] (imputed)	N
1695	chr4	145574843	145574844	rs1812175	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	4q31.21	NR	rs1812175-?	NR	6E-9		0.03694554	[0.025-0.049] unit increase	Illumina [34656550] (imputed)	N
1695	chr4	145574843	145574844	rs1812175	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	4q31.21	HHIP	rs1812175-G	0.8336	6E-11	(EA, men)	0.0492	[0.034-0.064] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1695	chr4	145574843	145574844	rs1812175	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	4q31.21	HHIP	rs1812175-G	0.8336	1E-10	(EA)	0.0321	[0.022-0.042] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1695	chr4	145574843	145574844	rs1812175	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	4q31.21	HHIP	rs1812175-G	0.8156	9E-11	(men)	0.0458	[0.032-0.06] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1695	chr4	145574843	145574844	rs1812175	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	4q31.21	HHIP	rs1812175-G	0.8336	4E-8	(EA)	0.0316	[0.02-0.043] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1695	chr4	145574843	145574844	rs1812175	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	4q31.21	HHIP	rs1812175-G	0.8325	8E-11	(EA, men)	0.054	[0.038-0.07] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1695	chr4	145574843	145574844	rs1812175	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	4q31.21	HHIP	rs1812175-G	0.829	2E-10	(men)	0.0506	[0.035-0.066] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1695	chr4	145574843	145574844	rs1812175	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	4q31.21	HHIP	rs1812175-?	0.8336	9E-11	(EA, men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1695	chr4	145574843	145574844	rs1812175	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	4q31.21	HHIP	rs1812175-?	0.8336	3E-9	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1695	chr4	145574843	145574844	rs1812175	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	4q31.21	HHIP	rs1812175-?	0.8156	1E-10	(men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1695	chr4	145574843	145574844	rs1812175	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in non-smokers	77,113 European ancestry women, 47,319 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	4q31.21	HHIP	rs1812175-A	0.1839	3E-7	(men)	0.0395	[0.024-0.055] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1695	chr4	145574843	145574844	rs1812175	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in non-smokers	77,113 European ancestry women, 47,319 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	4q31.21	HHIP	rs1812175-A	0.1839	2E-6		0.0253	[0.015-0.036] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1695	chr4	145574843	145574844	rs1812175	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	4q31.21	HHIP	rs1812175-A	0.1839	5E-7	(men)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1695	chr4	145574843	145574844	rs1812175	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	4q31.21	HHIP	rs1812175-A	0.1839	4E-6				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1695	chr4	145574843	145574844	rs1812175	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	4q31.21	HHIP	rs1812175-A	0.1839	4E-7		0.024	[0.015-0.033] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1695	chr4	145574843	145574844	rs1812175	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	4q31.21	HHIP	rs1812175-A	0.1839	2E-8	(men)	0.0375	[0.024-0.051] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1695	chr4	145574843	145574844	rs1812175	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	4q31.21	HHIP	rs1812175-A	0.1653	4E-13	(EA)	0.033	[0.024-0.042] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1695	chr4	145574843	145574844	rs1812175	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	4q31.21	HHIP	rs1812175-A	0.1653	2E-11	(EA, men)	0.0432	[0.031-0.056] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1695	chr4	145574843	145574844	rs1812175	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	4q31.21	HHIP	rs1812175-A	0.1651	4E-22	(EA,men)	0.067	[0.053-0.081] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1695	chr4	145574843	145574844	rs1812175	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	4q31.21	HHIP	rs1812175-A	0.1651	2E-34	(EA)	0.0587	[0.049-0.068] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1695	chr4	145574843	145574844	rs1812175	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	4q31.21	HHIP	rs1812175-A	0.1651	1E-16	(EA, women)	0.051	[0.039-0.063] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1695	chr4	145574843	145574844	rs1812175	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	4q31.21	HHIP	rs1812175-A	0.163	2E-86		0.079	[0.071-0.087] unit decrease	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
1695	chr4	145574843	145574844	rs1812175	25281659	van der Valk RJ	2014-10-03	Hum Mol Genet	A novel common variant in DCST2 is associated with length in early life and height in adulthood.	Infant length	28,238 European ancestry individuals	NA	4q31.21	HHIP	rs1812175-A	0.18	2E-9		0.068	[0.046-0.090] unit decrease	Affymetrix, Illumina [2193675] (imputed)	N
1695	chr4	145574843	145574844	rs1812175	20397748	Liu JZ	2010-04-01	Twin Res Hum Genet	Genome-wide association study of height and body mass index in Australian twin families.	Height	11,536 European ancestry individuals	NA	4q31.21	HHIP	rs1812175-C	0.83	1E-9		0.12	[0.07-0.17] SD decrease	Illumina [559712] (imputed)	N
1695	chr4	145574843	145574844	rs1812175	19343178	Soranzo N	2009-04-03	PLoS Genet	Meta-analysis of genome-wide scans for human adult stature identifies novel Loci and associations with measures of skeletal frame size.	Height	12,611 European ancestry individuals	7,187 European ancestry individuals	4q31.21	HHIP	rs1812175-?	0.49	4E-6		0.06	[0.03-0.09] s.d. decrease	Illumina [229216]	N
1695	chr4	145574843	145574844	rs1812175	18391951	Gudbjartsson DF	2008-04-06	Nat Genet	Many sequence variants affecting diversity of adult human height.	Height	30,968 European ancestry individuals	8,541 European ancestry individuals	4q31.21	HHIP	rs1812175-C	0.86	1E-11		8.3	[5.95-10.65] % s.d. increase	Affymetrix, Illumina [up to 304226]	N
1695	chr4	145580171	145580172	rs114633728	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	4q31.21	HHIP-AS1, HHIP	rs114633728-C	NR	2E-10		0.0491499	[0.034-0.064] unit increase	Affymetrix [323123] (imputed)	N
1695	chr4	145586458	145586459	rs982903	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	4q31.21	NR	rs982903-?	NR	3E-13				Affymetrix [~ 8270000] (imputed)	N
1695	chr4	145590957	145590958	rs34701002	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	4q31.21	HHIP	rs34701002-A	0.0765	5E-6		0.0848	[0.048-0.121] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1695	chr4	145591293	145591294	rs77362667	34270706	Lin E	2021-07-16	Hum Mol Genet	Genome-wide association study in the Taiwan biobank identifies four novel genes for human height: NABP2, RASA2, RNF41 and SLC39A5.	Height	14,571 Taiwanese Han Chinese ancestry individuals	20,506 Taiwanese Han Chinese ancestry individuals	4q31.21	HHIP	rs77362667-?	NR	3E-8		0.45	[0.29-0.61] unit increase	Affymetrix [5682219] (imputed)	N
1695	chr4	145599533	145599534	rs11946517	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	4q31.21	HHIP	rs11946517-G	NR	1E-36		0.039349	[0.033-0.045] unit decrease	Affymetrix [323123] (imputed)	N
1695	chr4	145599533	145599534	rs11946517	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	4q31.21	HHIP	rs11946517-G	0.416446	6E-14		0.0140912	[0.01-0.018] unit increase	NR [13737936] (imputed)	N
1695	chr4	145599533	145599534	rs11946517	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	4q31.21		rs11946517-?	NR	2E-22				NR [~ 8900000] (imputed)	N
1695	chr4	145599907	145599908	rs2131354	32902719	Hebbar P	2020-09-09	Hum Genet	Genome-wide landscape establishes novel association signals for metabolic traits in the Arab population.	Height	2,732 Kuwaiti ancestry individuals	NA	4q31.21	HHIP	rs2131354-?	NR	8E-8		5.358	NR unit increase	Illumina [up to 1520000] (imputed)	N
1695	chr4	145599907	145599908	rs2131354	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	4q31.21	LOC646576, HHIP	rs2131354-A	0.526791	3E-16		0.025738	[0.02-0.032] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
1695	chr4	145599907	145599908	rs2131354	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	4q31.21	HHIP	rs2131354-A	0.5421	2E-9		0.0516	[0.035-0.068] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1695	chr4	145599907	145599908	rs2131354	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	4q31.21	HHIP	rs2131354-A	0.5368	2E-19		0.0599	[0.047-0.073] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1695	chr4	145601862	145601863	rs6537307	31681408	Yang XL	2019-10-11	Front Genet	Three Novel Loci for Infant Head Circumference Identified by a Joint Association Analysis.	Birth weight (MTAG)	up to 182,902 European ancestry individuals	NA	4q31.21	NR	rs6537307-A	0.5	1E-12		0.027060764	[0.02-0.035] unit decrease	NR [1977400] (imputed)	N
1695	chr4	145601862	145601863	rs6537307	31681408	Yang XL	2019-10-11	Front Genet	Three Novel Loci for Infant Head Circumference Identified by a Joint Association Analysis.	Birth length (MTAG)	up to 182,902 European ancestry individuals	NA	4q31.21	NR	rs6537307-A	0.54	2E-12		0.043142006	[0.031-0.055] unit decrease	NR [1977400] (imputed)	N
1695	chr4	145601862	145601863	rs6537307	27680694	Horikoshi M	2016-10-13	Nature	Genome-wide associations for birth weight and correlations with adult disease.	Birth weight	133,903 European ancestry individuals, 6,635 African American individuals, 420 Turkish ancestry individuals, 365 Moroccan ancestry individuals, 395 Surinamese ancestry individuals, 840 Chinese ancestry individuals.	9,799 European ancestry individuals, 1,449 Filipino ancestry individuals.	4q31.21	HHIP	rs6537307-G	0.48	1E-12		0.0259	[0.019-0.033] unit increase	Affymetrix, Illumina [at least 22434434] (imputed)	N
1695	chr4	145605024	145605025	rs2575580	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	4q31.21	HHIP	rs2575580-G	NR	7E-30		0.0467905	[0.039-0.055] unit decrease	Affymetrix [321016] (imputed)	N
1695	chr4	145605213	145605213	rs141349721	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	4q31.21	HHIP	rs141349721-TA	NR	1E-10		0.0205806	[0.014-0.027] unit increase	Affymetrix [323858] (imputed)	N
1695	chr4	145611936	145611936	rs762527406	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	4q31.21	HHIP	rs762527406-CTA	NR	2E-38		0.0365366	[0.031-0.042] unit decrease	Affymetrix [321016] (imputed)	N
1695	chr4	145612552	145612552	rs200995462	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	4q31.21	NR	rs200995462-T	0.4886	2E-10		0.0299	[0.021-0.039] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1695	chr4	145613806	145613807	rs6812830	35079123	Chambers T	2022-01-25	Mol Psychiatry	Genetic common variants associated with cerebellar volume and their overlap with mental disorders: a study on 33,265 individuals from the UK-Biobank.	Total cerebellar volume (excluding Crus I vermis)	33,265 European ancestry individuals	NA	4q31.21		rs6812830-A	NR	2E-8		0.0306	[0.02-0.041] unit increase	Affymetrix [6193476] (imputed)	N
1695	chr4	145619412	145619413	rs1492819	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	4q31.21	HHIP	rs1492819-T	NR	2E-8		0.017354	[0.011-0.023] unit decrease	Affymetrix [321114] (imputed)	N
1696	chr4	145621327	145621328	rs75686861	34450027	Boer CG	2021-08-24	Cell	Deciphering osteoarthritis genetics across 826,690 individuals from 9 populations.	Osteoarthritis (with total hip replacement)	23,021 European ancestry cases, 296,016 European ancestry controls	NA	4q31.21		rs75686861-A	0.0946	3E-9		1.1213126	[1.079688631-1.164541334]	Affymetrix, Illumina [NR] (imputed)	N
1696	chr4	145621327	145621328	rs75686861	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	4q31.21	NR	rs75686861-G	0.907	4E-9		0.0469	[0.031-0.063] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
1696	chr4	145621327	145621328	rs75686861	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	4q31.21	NR	rs75686861-G	0.907913	4E-10		0.00821613	[0.0054-0.0111] unit increase	Affymetrix [16582909] (imputed)	N
1696	chr4	145621327	145621328	rs75686861	31089142	Law PJ	2019-05-14	Nat Commun	Association analyses identify 31 new risk loci for colorectal cancer susceptibility.	Colorectal cancer	31,197 European ancestry cases, 61,770 European ancestry controls	NA	4q31.21	NR	rs75686861-A	0.1	2E-9		1.12	[1.08-1.16]	Affymetrix, Illumina [> 10000000] (imputed)	N
1696	chr4	145621327	145621328	rs75686861	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	4q31.21		rs75686861-?	NR	1E-22				NR [~ 8900000] (imputed)	N
1696	chr4	145624366	145624366	rs568298987	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	4q31.21	NR	rs568298987-CA	NR	3E-9		0.0145	[0.0098-0.0192] unit decrease	Affymetrix [9000000] (imputed)	N
1696	chr4	145627970	145627971	rs74730596	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	4q31.21	HHIP	rs74730596-A	NR	3E-8		0.0611756	[0.039-0.083] unit increase	Affymetrix [321016] (imputed)	N
1696	chr4	145643078	145643079	rs6854783	18391952	Weedon MN	2008-04-06	Nat Genet	Genome-wide association analysis identifies 20 loci that influence adult height.	Height	13,665 European ancestry individuals	16,482 European ancestry individuals	4q31.21	HHIP	rs6854783-A	0.43	2E-9		0.06	[0.03-0.08] s.d. increase (males)	Affymetrix [402951]	N
1696	chr4	145650020	145650021	rs1492820	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	4q31.21	NR	rs1492820-?	NR	2E-6		0.02721347	[0.016-0.039] unit increase	Illumina [34656550] (imputed)	N
1696	chr4	145650020	145650021	rs1492820	18391950	Lettre G	2008-04-06	Nat Genet	Identification of ten loci associated with height highlights new biological pathways in human growth.	Height	15,821 European ancestry individuals	Up to 17,801 European ancestry individuals	4q31.21	HHIP	rs1492820-G	0.48	1E-11		0.29	[0.21-0.37] cm decrease	Affymetrix, Illumina [2260683] (imputed)	N
1696	chr4	145655388	145655389	rs55817790	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	4q31.21	HHIP	rs55817790-A	NR	3E-9		0.0169365	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
1696	chr4	145655388	145655389	rs55817790	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	4q31.21	HHIP	rs55817790-A	NR	4E-8		0.0156908	[0.01-0.021] unit increase	Affymetrix [319769] (imputed)	N
1696	chr4	145656893	145656894	rs35135458	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	4q31.21	NR	rs35135458-?	NR	7E-9				Affymetrix [~ 8270000] (imputed)	N
1696	chr4	145658285	145658286	rs6826012	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	4q31.21	HHIP	rs6826012-C	NR	1E-40		0.040944	[0.035-0.047] unit decrease	Affymetrix [323123] (imputed)	N
1696	chr4	145659063	145659064	rs11727676	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HHIP	5,361 Icelandic ancestry individuals	NA	4q31.21		rs11727676-C	0.09441	1E-12		0.229299	[0.17-0.29] unit increase	Illumina [7506463] (imputed)	N
1696	chr4	145659063	145659064	rs11727676	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	4q31.21		rs11727676-?	NR	3E-10		0.00978739	[0.0067-0.0128] unit decrease	NR [NR]	N
1696	chr4	145659063	145659064	rs11727676	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	4q31.21		rs11727676-C	0.08	9E-44		13.88	z score increase	Affymetrix [9061022] (imputed)	N
1696	chr4	145659063	145659064	rs11727676	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	4q31.21		rs11727676-C	0.08	5E-19		8.91	z score increase	Affymetrix [9061022] (imputed)	N
1696	chr4	145659063	145659064	rs11727676	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	4q31.21		rs11727676-C	0.08	3E-30		11.43	z score increase	Affymetrix [9061022] (imputed)	N
1696	chr4	145659063	145659064	rs11727676	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	4q31.21		rs11727676-C	NR	1E-11		0.0257	[0.018-0.033] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
1696	chr4	145659063	145659064	rs11727676	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	4q31.21	NR	rs11727676-C	0.0948	1E-17				NR [9056863] (imputed)	N
1696	chr4	145659063	145659064	rs11727676	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	4q31.21	NR	rs11727676-C	0.0948	1E-17				NR [9056863] (imputed)	N
1696	chr4	145659063	145659064	rs11727676	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting insulin	151,013 European ancestry individuals	NA	4q31.21	HHIP	rs11727676-T	0.9127	3E-8		0.0203	[0.013-0.028] unit decrease	Affymetrix, Illumina [32635793] (imputed)	N
1696	chr4	145659063	145659064	rs11727676	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	4q31.21	HHIP	rs11727676-C	NR	3E-14		0.0365074	[0.027-0.046] unit increase	Affymetrix [319769] (imputed)	N
1696	chr4	145659063	145659064	rs11727676	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	4q31.21	HHIP	rs11727676-C	NR	9E-16		0.0385472	[0.029-0.048] unit increase	Affymetrix [319769] (imputed)	N
1696	chr4	145659063	145659064	rs11727676	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	4q31.21	HHIP	rs11727676-C	NR	1E-23		0.0483693	[0.039-0.058] unit increase	Affymetrix [321114] (imputed)	N
1696	chr4	145659063	145659064	rs11727676	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	4q31.21	HHIP	rs11727676-C	NR	1E-9		0.0318355	[0.022-0.042] unit increase	Affymetrix [321114] (imputed)	N
1696	chr4	145659063	145659064	rs11727676	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	4q31.21	HHIP	rs11727676-C	NR	1E-17		0.0414785	[0.032-0.051] unit increase	Affymetrix [321169] (imputed)	N
1696	chr4	145659063	145659064	rs11727676	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 5)	19,670 European ancestry individuals	NA	4q31.21		rs11727676-?	NR	2E-12				NR [9705931] (imputed)	N
1696	chr4	145659063	145659064	rs11727676	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	4q31.21	HHIP, ANAPC10, ABCE1, OTUD4	rs11727676-?		1E-11				NR [7428630] (imputed)	N
1696	chr4	145659063	145659064	rs11727676	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	4q31.21	HHIP	rs11727676-T	0.903565	3E-8		0.0131462	[0.0085-0.0178] unit increase	Affymetrix [12370749]	N
1696	chr4	145659063	145659064	rs11727676	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	4q31.21	NR	rs11727676-?	NR	3E-8	(right cerebellum exterior)			NR [9227495] (imputed)	N
1696	chr4	145659063	145659064	rs11727676	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	4q31.21	NR	rs11727676-?	NR	4E-18				Affymetrix [~ 8270000] (imputed)	N
1696	chr4	145659063	145659064	rs11727676	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	4q31.21	NR	rs11727676-?	NR	6E-37				Affymetrix [~ 8270000] (imputed)	N
1696	chr4	145659063	145659064	rs11727676	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	4q31.21	NR	rs11727676-C	0.0946	3E-8		1.09	[1.06-1.12]	Affymetrix, Illumina [16900397] (imputed)	N
1696	chr4	145659063	145659064	rs11727676	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	4q31.21	NR	rs11727676-T	0.9107	2E-20		0.0284	[0.022-0.034] unit decrease	NR [~ 27400000] (imputed)	N
1696	chr4	145659063	145659064	rs11727676	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	4q31.21	NR	rs11727676-T	0.9109	1E-8		0.0172	[0.011-0.023] unit decrease	NR [~ 27400000] (imputed)	N
1696	chr4	145659063	145659064	rs11727676	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	4q31.21	HHIP	rs11727676-C	0.0963206128469402	1E-6		0.0044496	[NR] unit decrease	Affymetrix [> 30000000] (imputed)	N
1696	chr4	145659063	145659064	rs11727676	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	4q31.21	NR	rs11727676-T	NR	7E-9		0.029	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
1696	chr4	145659063	145659064	rs11727676	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	4q31.21		rs11727676-T	NR	1E-6		0.03	unit increase	Affymetrix [at least 7091467] (imputed)	N
1696	chr4	145659063	145659064	rs11727676	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	265,204 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	4q31.21	NR	rs11727676-T	NR	4E-8		0.028	unit increase	Affymetrix [at least 7091467] (imputed)	N
1696	chr4	145659063	145659064	rs11727676	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	4q31.21	NR	rs11727676-T	0.909465157545266	6E-11		0.03790491	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1696	chr4	145659063	145659064	rs11727676	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	4q31.21	HHIP	rs11727676-T	0.911	6E-9		0.037	[0.024-0.049] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1696	chr4	145659063	145659064	rs11727676	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	4q31.21	HHIP	rs11727676-T	0.911	1E-6	(EA, men)	0.04	[0.024-0.057] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1696	chr4	145659063	145659064	rs11727676	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	4q31.21	HHIP	rs11727676-T	0.91	3E-8	(EA)	0.036	[0.023-0.048] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1696	chr4	145663797	145663798	rs72718211	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	4q31.21	HHIP	rs72718211-A	NR	5E-8		0.0161313	[0.01-0.022] unit increase	Affymetrix [321788] (imputed)	N
1696	chr4	145663797	145663798	rs72718211	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	4q31.21	HHIP	rs72718211-A	NR	3E-34		0.0345901	[0.029-0.04] unit increase	Affymetrix [321016] (imputed)	N
1696	chr4	145663797	145663798	rs72718211	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (min-P)	26,502 European ancestry individuals	NA	4q31.21	WNT2B, ST7L, CAPZA1, MOV10, RHOC, RP11-426L16.10, PPM1J	rs72718211-?		1E-8				NR [7428630] (imputed)	N
1696	chr4	145663797	145663798	rs72718211	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (min-P)	26,502 European ancestry individuals	NA	4q31.21	CNTN2, TMEM81, RBBP5, DSTYK, TMCC2, NUAK2	rs72718211-?		5E-8				NR [7428630] (imputed)	N
1696	chr4	145670870	145670871	rs11944404	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	4q31.21	NR	rs11944404-?	NR	3E-13	(female)	0.17634	[0.13-0.22] unit increase	Affymetrix [7794483] (imputed)	N
1696	chr4	145670870	145670871	rs11944404	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	4q31.21	NR	rs11944404-?	NR	2E-10	(male)	0.22263	[0.15-0.29] unit increase	Affymetrix [7794483] (imputed)	N
1696	chr4	145670870	145670871	rs11944404	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	4q31.21	NR	rs11944404-?	NR	1E-19		0.20096	[0.16-0.24] unit increase	Affymetrix [7794483] (imputed)	N
1696	chr4	145685667	145685668	rs180762722	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	4q31.21		rs180762722-?	NR	6E-19				NR [~ 8900000] (imputed)	N
1696	chr4	145695352	145695353	rs191473307	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	4q31.21	HHIP	rs191473307-T	NR	2E-12		0.0495948	[0.036-0.063] unit increase	Affymetrix [323123] (imputed)	N
1696	chr4	145706069	145706070	rs75385537	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	4q31.21	HHIP	rs75385537-C	NR	6E-12		0.0352874	[0.025-0.045] unit decrease	Affymetrix [321114] (imputed)	N
1696	chr4	145706069	145706070	rs75385537	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	4q31.21	HHIP	rs75385537-T	0.9017	7E-10		0.095	[0.065-0.125] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1696	chr4	145713691	145713692	rs7684268	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	4q31.21	HHIP	rs7684268-A	NR	5E-13		0.0472533	[0.034-0.06] unit increase	Affymetrix [321016] (imputed)	N
1696	chr4	145713768	145713769	rs4576021	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	4q31.21	NR	rs4576021-T	0.42047	2E-11		0.0465263	[0.033-0.06] unit decrease	Affymetrix [17914406] (imputed)	N
1696	chr4	145713768	145713769	rs4576021	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	4q31.21		rs4576021-?	NR	1E-23		0.0207263	[0.017-0.025] unit decrease	Affymetrix [20259828] (imputed)	N
1696	chr4	145718861	145718865	rs138811966	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	4q31.21		rs138811966-G	NR	3E-35		0.0231	[0.019-0.027] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1696	chr4	145718861	145718861	rs757932380	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	4q31.21	HSPD1P5	rs757932380-G	NR	6E-12		0.022587	[0.016-0.029] unit increase	Affymetrix [323858] (imputed)	N
1696	chr4	145719248	145719249	rs116216151	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	4q31.21	HSPD1P5	rs116216151-G	NR	1E-11		0.049363	[0.035-0.064] unit decrease	Affymetrix [321016] (imputed)	N
1696	chr4	145719248	145719249	rs116216151	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	4q31.21	HSPD1P5	rs116216151-T	0.9535	7E-6		0.0811	[0.046-0.116] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1696	chr4	145722307	145722308	rs12504213	28030426	Mahmoudpour SH	2017-03-27	Pharmacogenet Genomics	Meta-analysis of genome-wide association studies on the intolerance of angiotensin-converting enzyme inhibitors.	Angiotensin-converting enzyme inhibitor intolerance	972 European ancestry intolerant individuals, 4,189 European ancestry tolerant individuals	NA	4q31.21	ANAPC10	rs12504213-?	0.080258	4E-6		1.570069	[1.295642-1.902623]	Affymetrix, Illumina [NR] (imputed)	N
1696	chr4	145722861	145722862	rs11933087	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	4q31.21	NR	rs11933087-?	NR	3E-12				Affymetrix [~ 8270000] (imputed)	N
1696	chr4	145722861	145722862	rs11933087	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	4q31.21	NR	rs11933087-?	NR	7E-9				Affymetrix [~ 8270000] (imputed)	N
1696	chr4	145724711	145724712	rs6537315	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	4q31.21	HHIP, OTUD4	rs6537315-?		5E-9				Affymetrix, Illumina [NR] (imputed)	N
1696	chr4	145729723	145729724	rs2353939	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	4q31.21	HSPD1P5	rs2353939-G	NR	1E-12		0.0225061	[0.016-0.029] unit decrease	Affymetrix [323858] (imputed)	N
1696	chr4	145729723	145729724	rs2353939	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	4q31.21	HSPD1P5	rs2353939-G	NR	2E-11		0.0212242	[0.015-0.027] unit decrease	Affymetrix [127266] (imputed)	N
1696	chr4	145732274	145732275	rs142624835	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	4q31.21	HSPD1P5	rs142624835-A	NR	7E-9		0.0254737	[0.017-0.034] unit decrease	Affymetrix [321114] (imputed)	N
1696	chr4	145735924	145735924	rs771956348	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	4q31.21	HSPD1P5	rs771956348-A	NR	1E-30		0.0553011	[0.046-0.065] unit decrease	Affymetrix [321016] (imputed)	N
1696	chr4	145738396	145738397	rs4835192	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	4q31.21	HSPD1P5	rs4835192-T	NR	4E-9		0.0192959	[0.013-0.026] unit increase	Affymetrix [321114] (imputed)	N
1696	chr4	145740897	145740898	rs2353940	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	4q31.21	OTUD4/SMAD1	rs2353940-T	0.7462	5E-40		0.0384	[0.033-0.044] unit increase	Affymetrix [19819130] (imputed)	N
1696	chr4	145740897	145740898	rs2353940	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	4q31.21	OTUD4/SMAD1	rs2353940-T	0.7462	5E-10		0.0169	[0.012-0.022] unit increase	Affymetrix [19819130] (imputed)	N
1696	chr4	145740897	145740898	rs2353940	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	4q31.21	OTUD4/SMAD1	rs2353940-T	0.7462	5E-19		0.0246	[0.019-0.03] unit increase	Affymetrix [19819130] (imputed)	N
1696	chr4	145740897	145740898	rs2353940	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	4q31.21	OTUD4/SMAD1	rs2353940-T	0.7462	2E-24		0.0275	[0.022-0.033] unit increase	Affymetrix [19819130] (imputed)	N
1697	chr4	145761159	145761160	rs6537319	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	4q31.21	NR	rs6537319-?	NR	7E-6	(AA)	12.57	[10.9-14.24]	Illumina [905956]	N
1697	chr4	145762727	145762728	rs139007769	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	4q31.21	HSPD1P5	rs139007769-A	NR	2E-8		0.0238468	[0.016-0.032] unit decrease	Affymetrix [321114] (imputed)	N
1697	chr4	145762727	145762728	rs139007769	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	4q31.21	HSPD1P5	rs139007769-A	NR	2E-37		0.0584759	[0.05-0.067] unit decrease	Affymetrix [323123] (imputed)	N
1697	chr4	145789240	145789241	rs145875511	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	4q31.21	RP13-539F13.3	rs145875511-T	NR	1E-8		0.0689708	[0.045-0.093] unit increase	Affymetrix [323123] (imputed)	N
1697	chr4	145796355	145796356	rs189446080	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	4q31.21	RP13-539F13.3	rs189446080-A	0.0207	8E-6		0.1347	[0.076-0.194] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1697	chr4	145822013	145822014	rs11100870	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	4q31.21	NR	rs11100870-?	NR	2E-21				Affymetrix [~ 8270000] (imputed)	N
1697	chr4	145825150	145825151	rs951252	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	4q31.21	NR	rs951252-G	0.54	4E-27		0.019	[0.016-0.022] unit increase	Affymetrix [2446094] (imputed)	N
1697	chr4	145825150	145825151	rs951252	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	4q31.21	NR	rs951252-G	0.54	5E-8				Affymetrix [2446094] (imputed)	N
1697	chr4	145825150	145825151	rs951252	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	315,284 European ancestry male individuals	NA	4q31.21	NR	rs951252-A	0.4514	3E-27		0.0185	[0.015-0.022] unit decrease	NR [~ 27400000] (imputed)	N
1697	chr4	145825150	145825151	rs951252	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	4q31.21	HHIP, ANAPC10	rs951252-A	0.4618	4E-15	(EA)	0.0278	[0.021-0.035] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1697	chr4	145825150	145825151	rs951252	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	4q31.21	ANAPC10, HHIP	rs951252-A	0.4618	7E-16	(EA, men)	0.0395	[0.03-0.049] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1697	chr4	145839263	145839264	rs4240326	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	4q31.21	RP13-539F13.2	rs4240326-A	NR	4E-9		0.0166768	[0.011-0.022] unit decrease	Affymetrix [319769] (imputed)	N
1697	chr4	145839263	145839264	rs4240326	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	4q31.21	RP13-539F13.2	rs4240326-A	NR	4E-8		0.0155542	[0.01-0.021] unit decrease	Affymetrix [319769] (imputed)	N
1697	chr4	145839263	145839264	rs4240326	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	4q31.21	RP13-539F13.2	rs4240326-A	NR	1E-37		0.0394801	[0.033-0.046] unit increase	Affymetrix [323123] (imputed)	N
1697	chr4	145839263	145839264	rs4240326	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	4q31.21		rs4240326-?	NR	6E-23				NR [~ 8900000] (imputed)	N
1697	chr4	145839263	145839264	rs4240326	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	4q31.21	ANAPC10	rs4240326-A	0.464	3E-43		0.04	[0.034-0.046] unit increase	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
1697	chr4	145840024	145840024	rs143907243	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	4q31.21	RP13-539F13.2	rs143907243-AT	NR	3E-8		0.0180178	[0.012-0.024] unit increase	Affymetrix [321169] (imputed)	N
1697	chr4	145868369	145868370	rs789351	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	4q31.21	ANAPC10	rs789351-T	NR	3E-27		0.0307049	[0.025-0.036] unit decrease	Affymetrix [321016] (imputed)	N
1697	chr4	145868369	145868370	rs789351	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	4q31.21	NA	rs789351-T	0.4202	8E-13		0.0123	[0.009-0.0156] unit increase	NR [~ 27400000] (imputed)	N
1697	chr4	145872244	145872245	rs149422861	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	4q31.21		rs149422861-?	NR	4E-12				NR [~ 8900000] (imputed)	N
1697	chr4	145878583	145878584	rs1648053	28030426	Mahmoudpour SH	2017-03-27	Pharmacogenet Genomics	Meta-analysis of genome-wide association studies on the intolerance of angiotensin-converting enzyme inhibitors.	Angiotensin-converting enzyme inhibitor intolerance	972 European ancestry intolerant individuals, 4,189 European ancestry tolerant individuals	NA	4q31.21	ANAPC10	rs1648053-?	0.140188	9E-6		1.402716	[1.20778-1.629115]	Affymetrix, Illumina [NR] (imputed)	N
1698	chr4	145885960	145885961	rs62343137	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	4q31.21	ANAPC10	rs62343137-C	0.371136	5E-13		0.016643723	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1698	chr4	145885960	145885961	rs62343137	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	4q31.21	ANAPC10	rs62343137-C	0.371104	6E-16		0.018665845	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1698	chr4	145891999	145892000	rs116637370	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	4q31.21	ANAPC10	rs116637370-G	NR	2E-9		0.0676142	[0.045-0.09] unit decrease	Affymetrix [323123] (imputed)	N
1698	chr4	145903035	145903036	rs55941720	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	4q31.21		rs55941720-T	0.158241	6E-9		0.0222673	[0.015-0.03] unit increase	Illumina [13479924] (imputed)	N
1698	chr4	145903035	145903036	rs55941720	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	4q31.21	HHIP, ANAPC10	rs55941720-?	NR	9E-14		0.030947229	[0.023-0.039] unit increase	Illumina [27896057] (imputed)	N
1698	chr4	145905212	145905213	rs200457388	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	4q31.21	ANAPC10	rs200457388-C	NR	4E-10		0.0178206	[0.012-0.023] unit increase	Affymetrix [319769] (imputed)	N
1698	chr4	145905212	145905213	rs200457388	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	4q31.21	ANAPC10	rs200457388-C	NR	4E-9		0.0167703	[0.011-0.022] unit increase	Affymetrix [319769] (imputed)	N
1698	chr4	145905212	145905213	rs200457388	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	4q31.21	ANAPC10	rs200457388-C	NR	4E-31		0.0359439	[0.03-0.042] unit decrease	Affymetrix [323123] (imputed)	N
1698	chr4	145905212	145905213	rs200457388	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	4q31.21	NR	rs200457388-C	0.423616	1E-12		0.0492202	[0.036-0.063] unit decrease	Affymetrix [17914406] (imputed)	N
1698	chr4	145919656	145919657	rs146087803	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	4q31.21	ANAPC10	rs146087803-A	NR	2E-19		0.0416184	[0.033-0.051] unit decrease	Affymetrix [321016] (imputed)	N
1698	chr4	145919656	145919657	rs146087803	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	4q31.21	ANAPC10	rs146087803-A	0.1043	7E-12		0.03975662	[0.028-0.051] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1698	chr4	145928472	145928473	rs62343144	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	4q31.21	ANAPC10	rs62343144-A	NR	5E-10		0.0263538	[0.018-0.035] unit increase	Affymetrix [323123] (imputed)	N
1698	chr4	145929869	145929870	rs534698374	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	4q31.21		rs534698374-?	NR	6E-15				NR [~ 8900000] (imputed)	N
1698	chr4	145937377	145937378	rs149038375	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	4q31.21	ANAPC10	rs149038375-A	NR	2E-25		0.0392161	[0.032-0.047] unit increase	Affymetrix [321016] (imputed)	N
1698	chr4	145937377	145937378	rs149038375	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	4q31.21	ANAPC10	rs149038375-A	NR	2E-18		0.0357944	[0.028-0.044] unit increase	Affymetrix [323123] (imputed)	N
1698	chr4	145938683	145938684	rs75336464	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	4q31.21	ANAPC10	rs75336464-G	0.318254	2E-10		0.016093018	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1698	chr4	145939304	145939305	rs13148067	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	4q31.21	ANAPC10	rs13148067-G	NR	1E-9		0.0191123	[0.013-0.025] unit increase	Affymetrix [319769] (imputed)	N
1698	chr4	145939304	145939305	rs13148067	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	4q31.21	ANAPC10	rs13148067-G	NR	6E-10		0.0193961	[0.013-0.026] unit increase	Affymetrix [319769] (imputed)	N
1698	chr4	145957247	145957248	rs35311767	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	4q31.21	ANAPC10	rs35311767-G	0.103688	5E-23		0.03641202	[0.029-0.044] unit increase	Affymetrix [93095623] (imputed)	N
1698	chr4	145957247	145957248	rs35311767	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	4q31.21	ANAPC10	rs35311767-G	0.103668	3E-14		0.02787774	[0.021-0.035] unit increase	Affymetrix [93095623] (imputed)	N
1698	chr4	145957247	145957248	rs35311767	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	4q31.21	ANAPC10	rs35311767-G	0.103659	2E-17		0.03125803	[0.024-0.038] unit increase	Affymetrix [93095623] (imputed)	N
1698	chr4	145982562	145982563	rs6823268	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		4q31.21	ANAPC10	rs6823268-A	0.628532	8E-9		0.0081752	[0.0054-0.011] unit decrease	Affymetrix [12370749]	N
1698	chr4	145982562	145982563	rs6823268	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	4q31.21		rs6823268-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1698	chr4	145982562	145982563	rs6823268	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	4q31.21	ANAPC10	rs6823268-A	0.82	2E-12		0.038	[0.022-0.054] unit decrease	Affymetrix, Illumina [2704730] (imputed)	N
1698	chr4	145982624	145982625	rs116662954	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	4q31.21	ANAPC10	rs116662954-A	NR	2E-8		0.0484046	[0.031-0.065] unit decrease	Affymetrix [321016] (imputed)	N
1698	chr4	145982624	145982625	rs116662954	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	4q31.21	ANAPC10	rs116662954-A	0.0274	9E-19		0.0518	[0.04-0.063] unit decrease	Affymetrix [18391927] (imputed)	N
1698	chr4	145982624	145982625	rs116662954	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	4q31.21		rs116662954-?	NR	1E-43				NR [~ 8900000] (imputed)	N
1698	chr4	145986744	145986745	rs79953717	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	4q31.21	ANAPC10	rs79953717-G	NR	2E-8		0.0422557	[0.027-0.057] unit increase	Affymetrix [319769] (imputed)	N
1698	chr4	145986744	145986745	rs79953717	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	4q31.21	ANAPC10	rs79953717-G	NR	5E-9		0.0442824	[0.029-0.059] unit increase	Affymetrix [319769] (imputed)	N
1698	chr4	145986744	145986745	rs79953717	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	4q31.21	ANAPC10	rs79953717-G	NR	2E-13		0.0564221	[0.041-0.071] unit increase	Affymetrix [321114] (imputed)	N
1698	chr4	145986744	145986745	rs79953717	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	4q31.21	ANAPC10	rs79953717-G	NR	4E-10		0.047876	[0.033-0.063] unit increase	Affymetrix [321169] (imputed)	N
1698	chr4	146007705	146007706	rs67365433	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	4q31.21	ANAPC10	rs67365433-A	NR	2E-10		0.0202194	[0.014-0.026] unit increase	Affymetrix [323858] (imputed)	N
1698	chr4	146007705	146007706	rs67365433	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	4q31.21	ANAPC10	rs67365433-A	NR	2E-9		0.0188608	[0.013-0.025] unit increase	Affymetrix [127266] (imputed)	N
1698	chr4	146007705	146007706	rs67365433	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	4q31.21	NR	rs67365433-A	0.423698	1E-12		0.0491673	[0.036-0.063] unit decrease	Affymetrix [17914406] (imputed)	N
1698	chr4	146008536	146008537	rs72718281	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	4q31.21	ANAPC10	rs72718281-T	0.3712	3E-10		0.02331122	[0.016-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1699	chr4	146015027	146015028	rs115057747	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	4q31.21	ANAPC10	rs115057747-T	NR	2E-13		0.0607043	[0.045-0.077] unit decrease	Affymetrix [323123] (imputed)	N
1699	chr4	146016256	146016257	rs76505278	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin concentration	172,851 European ancestry individuals	NA	4q31.21	ANAPC10	rs76505278-C	0.103	3E-10		0.03591126	[0.025-0.047] unit increase	Affymetrix [~ 2500000] (imputed)	N
1699	chr4	146027433	146027434	rs17725600	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	4q31.21	NR	rs17725600-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
1699	chr4	146027433	146027434	rs17725600	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	4q31.21	NR	rs17725600-?	NR	6E-6	(AA)	12.73	[11.06-14.4]	Illumina [905956]	N
1699	chr4	146045767	146045768	rs34835465	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	4q31.21	ABCE1, OTUD4	rs34835465-C	NR	1E-28		0.0665613	[0.055-0.078] unit decrease	Affymetrix [323123] (imputed)	N
1699	chr4	146055116	146055117	rs11545157	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	4q31.21		rs11545157-C	NR	1E-8		0.0213	[0.014-0.029] unit increase	Affymetrix, Illumina [20536605] (imputed)	N
1699	chr4	146055116	146055117	rs11545157	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	4q31.21	OTUD4	rs11545157-C	0.112888	5E-29		0.039578404	[0.033-0.047] unit increase	Affymetrix [93095623] (imputed)	N
1699	chr4	146055116	146055117	rs11545157	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	4q31.21	OTUD4	rs11545157-C	0.112961	2E-12		0.0244726	[0.018-0.031] unit increase	Affymetrix [93095623] (imputed)	N
1699	chr4	146055116	146055117	rs11545157	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	4q31.21	OTUD4	rs11545157-C	0.112841	1E-89		0.07090902	[0.064-0.078] unit decrease	Affymetrix [93095623] (imputed)	N
1699	chr4	146055116	146055117	rs11545157	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	4q31.21	OTUD4	rs11545157-C	0.112881	5E-81		0.070087865	[0.063-0.077] unit decrease	Affymetrix [93095623] (imputed)	N
1699	chr4	146055116	146055117	rs11545157	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	4q31.21	OTUD4	rs11545157-C	0.112972	2E-19		0.0314635	[0.025-0.038] unit increase	Affymetrix [93095623] (imputed)	N
1699	chr4	146055116	146055117	rs11545157	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	4q31.21	NR	rs11545157-C	0.112641	1E-17		0.02512	[0.019-0.031] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
1699	chr4	146055116	146055117	rs11545157	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	4q31.21	NR	rs11545157-C	0.113042	9E-20		0.028862	[0.023-0.035] SD unit increase	Affymetrix, Illumina [50282193] (imputed)	N
1699	chr4	146081095	146081096	rs11734405	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	4q31.21	NR	rs11734405-C	0.49	5E-9			[NR]	Affymetrix [9886854] (imputed)	N
1699	chr4	146081095	146081096	rs11734405	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	4q31.21	NR	rs11734405-C	0.49	3E-8		0.93	[0.91-0.96]	Affymetrix [9886854] (imputed)	N
1699	chr4	146081095	146081096	rs11734405	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	4q31.21	NR	rs11734405-C	0.49	2E-8			[NR]	Affymetrix [9886854] (imputed)	N
1699	chr4	146081095	146081096	rs11734405	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in non-current smokers	16,488 European ancestry cases, 169,688 European ancestry controls	NA	4q31.21	NR	rs11734405-C	0.49	3E-8		0.93	[0.91-0.96]	Affymetrix [9886854] (imputed)	N
1699	chr4	146081095	146081096	rs11734405	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in ever smokers	12,446 European ancestry cases, 59,145 European ancestry controls	NA	4q31.21	NR	rs11734405-C	0.49	6E-6		0.94	[0.91-0.96]	Affymetrix [9886854] (imputed)	N
1699	chr4	146081851	146081852	rs36225153	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	4q31.21		rs36225153-C	0.886	3E-17		0.15	[0.11-0.18] % increase	Affymetrix [NR] (imputed)	N
1699	chr4	146081851	146081852	rs36225153	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	4q31.21	OTUD4	rs36225153-T	0.113208	2E-23		0.0341306	[0.028-0.04] unit decrease	Affymetrix [93095623] (imputed)	N
1699	chr4	146081851	146081852	rs36225153	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q31.21	NR	rs36225153-T	0.11169	5E-17				Affymetrix, Illumina [21126107] (imputed)	N
1699	chr4	146081851	146081852	rs36225153	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	4q31.21	NR	rs36225153-?	NR	6E-9				Affymetrix [~ 8270000] (imputed)	N
1699	chr4	146081851	146081852	rs36225153	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	4q31.21		rs36225153-?	NR	2E-12				NR [~ 8900000] (imputed)	N
1699	chr4	146081851	146081852	rs36225153	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	4q31.21	OTUD4	rs36225153-T	0.1172	8E-13		0.0767	[0.056-0.098] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1699	chr4	146081851	146081852	rs36225153	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	4q31.21	OTUD4	rs36225153-T	0.1129	5E-13		0.04124811	[0.03-0.052] unit increase	Affymetrix [~ 2500000] (imputed)	N
1699	chr4	146081851	146081852	rs36225153	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	4q31.21	OTUD4	rs36225153-T	0.1129	5E-16		0.04631483	[0.035-0.058] unit increase	Affymetrix [~ 2500000] (imputed)	N
1699	chr4	146083831	146083832	rs146306989	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	4q31.21		rs146306989-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1699	chr4	146106900	146106901	rs78131250	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	4q31.21		rs78131250-C	0.045382	4E-25		0.05583287	[0.045-0.066] unit increase	Affymetrix [93095623] (imputed)	N
1699	chr4	146111756	146111757	rs34984545	28030426	Mahmoudpour SH	2017-03-27	Pharmacogenet Genomics	Meta-analysis of genome-wide association studies on the intolerance of angiotensin-converting enzyme inhibitors.	Angiotensin-converting enzyme inhibitor intolerance	972 European ancestry intolerant individuals, 4,189 European ancestry tolerant individuals	NA	4q31.21	OTUD4	rs34984545-?	0.121595	6E-7		1.506737	[1.283176-1.769246]	Affymetrix, Illumina [NR] (imputed)	N
1699	chr4	146117264	146117265	rs111853274	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	4q31.21	OTUD4	rs111853274-T	NR	8E-24		0.0302946	[0.024-0.036] unit increase	Affymetrix [321016] (imputed)	N
1699	chr4	146117264	146117265	rs111853274	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	4q31.21	OTUD4	rs111853274-T	NR	3E-25		0.0340436	[0.028-0.04] unit increase	Affymetrix [323123] (imputed)	N
1699	chr4	146123050	146123051	rs112601872	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	4q31.21	OTUD4	rs112601872-T	0.6535	4E-8		0.0389	[0.025-0.053] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1699	chr4	146125243	146125243	rs201086158	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	4q31.21	OTUD4	rs201086158-AT	NR	2E-9		0.0378234	[0.025-0.05] unit increase	Affymetrix [323123] (imputed)	N
1699	chr4	146128883	146128884	rs996743	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	4q31.21	OTUD4	rs996743-G	NR	1E-10		0.0346637	[0.024-0.045] unit decrease	Affymetrix [323123] (imputed)	N
1699	chr4	146130012	146130013	rs2355235	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	4q31.21		rs2355235-G	0.168125	2E-10		0.019137073	[0.013-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1699	chr4	146133825	146133826	rs11733300	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	4q31.21	OTUD4	rs11733300-A	NR	2E-17		0.0261745	[0.02-0.032] unit decrease	Affymetrix [323123] (imputed)	N
1699	chr4	146138319	146138320	rs77458513	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	4q31.21	OTUD4	rs77458513-T	NR	2E-9		0.0397699	[0.027-0.053] unit decrease	Affymetrix [321016] (imputed)	N
1699	chr4	146141566	146141567	rs6537335	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	4q31.21		rs6537335-T	0.832264	8E-10		0.018589776	[0.013-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1699	chr4	146143199	146143201	rs138157424	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	4q31.21		rs138157424-G	0.9584049	2E-23		0.057480622	[0.046-0.069] unit decrease	Affymetrix [93095623] (imputed)	N
1700	chr4	146152797	146152798	rs2355610	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q31.21	NR	rs2355610-C	0.783529	1E-10				Affymetrix, Illumina [24588908] (imputed)	N
1700	chr4	146156669	146156670	rs2883723	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	4q31.21	NR	rs2883723-A	0.83167	8E-12		0.016809	[0.012-0.022] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1700	chr4	146161391	146161392	rs140246206	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	4q31.21	RPS23P4	rs140246206-C	NR	1E-15		0.0648646	[0.049-0.081] unit decrease	Affymetrix [321016] (imputed)	N
1700	chr4	146161391	146161392	rs140246206	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	4q31.21	RPS23P4	rs140246206-C	NR	2E-10		0.0565181	[0.039-0.074] unit decrease	Affymetrix [323123] (imputed)	N
1700	chr4	146161391	146161392	rs140246206	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	4q31.21	RPS23P4	rs140246206-T	0.9747	2E-6		0.1442	[0.085-0.203] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1700	chr4	146167656	146167657	rs6844904	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	4q31.21		rs6844904-?	NR	2E-34				NR [~ 8900000] (imputed)	N
1700	chr4	146167656	146167657	rs6844904	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	4q31.21		rs6844904-?	NR	2E-37		0.0343781	[0.029-0.04] unit decrease	Affymetrix [20259828] (imputed)	N
1700	chr4	146168416	146168417	rs148940539	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	4q31.21	RPS23P4	rs148940539-A	NR	4E-8		0.0656498	[0.042-0.089] unit decrease	Affymetrix [323123] (imputed)	N
1700	chr4	146171138	146171139	rs146815522	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	4q31.21	RPS23P4	rs146815522-T	NR	3E-8		0.0610445	[0.039-0.083] unit decrease	Affymetrix [321016] (imputed)	N
1700	chr4	146172748	146172749	rs13148635	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	4q31.21	RPS23P4	rs13148635-T	NR	1E-8		0.0217598	[0.014-0.029] unit decrease	Affymetrix [321016] (imputed)	N
1700	chr4	146174039	146174040	rs111898810	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FVC)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		4q31.21		rs111898810-?	NR	6E-6		18.67	[10.58-26.76] unit decrease	Affymetrix, Illumina [10900000] (imputed)	N
1700	chr4	146174039	146174040	rs111898810	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FEV1)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		4q31.21	OTUD4, SMAD1	rs111898810-A	0.22	2E-7	(EA)	20.92	[12.98-28.86] unit decrease	Affymetrix, Illumina [10900000] (imputed)	N
1700	chr4	146174039	146174040	rs111898810	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FEV1)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		4q31.21	OTUD4, SMAD1	rs111898810-A	0.2	2E-8		20.24	[13.16-27.32] ml decrease	Affymetrix, Illumina [10900000] (imputed)	N
1700	chr4	146174477	146174478	rs4835000	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	4q31.21	RPS23P4	rs4835000-A	NR	3E-8		0.0391437	[0.025-0.053] unit decrease	Affymetrix [321114] (imputed)	N
1700	chr4	146174477	146174478	rs4835000	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	4q31.21	RPS23P4	rs4835000-A	NR	7E-20		0.0588225	[0.046-0.071] unit decrease	Affymetrix [321016] (imputed)	N
1700	chr4	146174477	146174478	rs4835000	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	4q31.21	RPS23P4	rs4835000-A	NR	3E-14		0.0533999	[0.04-0.067] unit decrease	Affymetrix [323123] (imputed)	N
1700	chr4	146174477	146174478	rs4835000	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	4q31.21	NR	rs4835000-?	NR	6E-16				Affymetrix [~ 8270000] (imputed)	N
1700	chr4	146174630	146174631	rs6839437	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	4q31.21	RPS23P4	rs6839437-T	NR	2E-8		0.0232656	[0.015-0.031] unit decrease	Affymetrix [323123] (imputed)	N
1700	chr4	146174630	146174631	rs6839437	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	4q31.21	OTUD4	rs6839437-T	0.16648	7E-38		0.0320462	[0.027-0.037] unit decrease	NR [13737936] (imputed)	N
1700	chr4	146174630	146174631	rs6839437	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	4q31.21		rs6839437-?	NR	4E-37		0.0343526	[0.029-0.04] unit decrease	Affymetrix [20259828] (imputed)	N
1700	chr4	146174630	146174631	rs6839437	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	4q31.21	OTUD4	rs6839437-T	0.165221	4E-10	(men)	0.0421531	[0.029-0.056] unit decrease	NR [17166351] (imputed)	N
1700	chr4	146174630	146174631	rs6839437	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	4q31.21	OTUD4	rs6839437-T	0.164983	3E-17		0.0364874	[0.028-0.045] unit decrease	NR [17166351] (imputed)	N
1700	chr4	146174630	146174631	rs6839437	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	4q31.21	OTUD4	rs6839437-T	0.164776	1E-6	(women)	0.0294972	[0.017-0.042] unit decrease	NR [17166351] (imputed)	N
1700	chr4	146174920	146174921	rs11730399	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	4q31.21	OTUD4	rs11730399-A	0.9264	8E-10	(EA, women)	0.0661	[0.045-0.087] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1700	chr4	146174920	146174921	rs11730399	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	4q31.21	OTUD4	rs11730399-A	0.9264	5E-13	(EA)	0.0597	[0.043-0.076] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1700	chr4	146174920	146174921	rs11730399	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	4q31.21	OTUD4	rs11730399-A	0.9264	4E-6	(EA,men)	0.0541	[0.031-0.077] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1700	chr4	146175162	146175163	rs202001093	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	4q31.21	intergenic	rs202001093-A	0.3565	1E-38		0.0282	[0.024-0.033] unit increase	Affymetrix [18391927] (imputed)	N
1700	chr4	146177040	146177041	rs13151178	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	4q31.21	NR	rs13151178-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
1700	chr4	146177913	146177915	rs34826810	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	4q31.21	RPS23P4	rs34826810-CTT	0.1606	2E-6		0.05	[0.029-0.071] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1700	chr4	146185058	146185059	rs76226214	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	4q31.21		rs76226214-?	NR	5E-10				NR [~ 8900000] (imputed)	N
1700	chr4	146194333	146194334	rs13122262	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	4q31.21	RPS23P4	rs13122262-G	NR	4E-8		0.0292667	[0.019-0.04] unit decrease	Affymetrix [321016] (imputed)	N
1700	chr4	146242906	146242907	rs10025919	28322283	Chibnik LB	2017-03-21	Mol Psychiatry	Susceptibility to neurofibrillary tangles: role of the PTPRD locus and limited pleiotropy with other neuropathologies.	Neurofibrillary tangles	909 European ancestry individuals	369 individuals	4q31.21	NR	rs10025919-T	0.88	7E-6	(EA)	0.16	[0.09-0.23] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1700	chr4	146249741	146249742	rs77440594	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	4q31.21	OTUD4	rs77440594-T	0.0164	3E-8	(Cer d18:2/23:0)	0.5864	[0.38-0.79] unit decrease	Illumina [~ 47000000] (imputed)	N
1701	chr4	146313099	146313100	rs1562064	30134952	Traglia M	2018-08-22	Genome Med	Cross-genetic determination of maternal and neonatal immune mediators during pregnancy.	Midgestational cytokine/chemokine levels (maternal genetic effect)	790 Hispanic, European, Asian, South Asian or African American individuals	NA	4q31.21	SMAD1	rs1562064-G	0.32	2E-8	(IL1-alpha)	0.74	[0.49-0.99] unit decrease	Affymetrix [629686]	N
1701	chr4	146334066	146334067	rs71614543	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	4q31.21	NR	rs71614543-C	0.054	5E-7	(IFNalpha_STAT4_of_CD4p_T)			Illumina [5084123] (imputed)	N
1701	chr4	146360756	146360757	rs34132583	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Hippocampal sclerosis	310 cases, 2,576 controls	NA	4q31.21	intergenic	rs34132583-A	0.0416	3E-7		0.9231	[0.57-1.27] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1701	chr4	146393095	146393096	rs13134992	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	4q31.21		rs13134992-T	NR	4E-10		0.0132	[0.0091-0.0173] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
1701	chr4	146393095	146393096	rs13134992	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	4q31.21		rs13134992-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1701	chr4	146393380	146393381	rs13110416	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q31.21	NR	rs13110416-G	0.446884	2E-12				Affymetrix, Illumina [24653286] (imputed)	N
1701	chr4	146403164	146403165	rs13144151	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	4q31.21	SMAD1	rs13144151-A	0.149999	4E-11		0.0178651	[0.013-0.023] unit decrease	Affymetrix [NR] (imputed)	N
1701	chr4	146403528	146403529	rs144783209	31712720	Forstner AJ	2019-11-11	Mol Psychiatry	Genome-wide association study of panic disorder reveals genetic overlap with neuroticism and depression.	Panic disorder	2,147 European ancestry cases, 7,760 European ancestry controls	2,408 European ancestry cases, 228,470 European ancestry controls	4q31.21	SMAD1	rs144783209-T	NR	3E-7		1.47	NR	Illumina [8757275] (imputed)	N
1702	chr4	146414266	146414267	rs11944685	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	4q31.21		rs11944685-G	0.270931	1E-8		0.0231548	[0.015-0.031] unit increase	Illumina [13476299] (imputed)	N
1702	chr4	146416404	146416405	rs6537356	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q31.21	NR	rs6537356-A	0.526739	2E-11				Affymetrix, Illumina [20825802] (imputed)	N
1702	chr4	146440817	146440817	rs59909582	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	4q31.21	SMAD1	rs59909582-AGA	0.591607	5E-10		0.014139353	[0.0097-0.0186] unit decrease	Affymetrix [93095623] (imputed)	N
1702	chr4	146440817	146440817	rs59909582	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	4q31.21	NR	rs59909582-I	0.590872	9E-11		0.013566	[0.0095-0.0177] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
1702	chr4	146445679	146445680	rs714195	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	4q31.21		rs714195-C	NR	2E-10		0.0108	[0.0075-0.0141] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
1702	chr4	146445679	146445680	rs714195	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	4q31.21	SMAD1	rs714195-C	0.583483	3E-9		0.013279504	[0.0089-0.0177] unit increase	Affymetrix [93095623] (imputed)	N
1702	chr4	146474041	146474042	rs11736932	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	4q31.21		rs11736932-A	0.525737	2E-9		0.0247009	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
1702	chr4	146474041	146474042	rs11736932	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	4q31.21		rs11736932-A	0.525739	4E-9		0.0240116	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
1702	chr4	146474232	146474232	rs113208405	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	4q31.21		rs113208405-AT	NR	2E-8		0.013	[0.0085-0.0175] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
1702	chr4	146480110	146480111	rs15392	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q31.21	NR	rs15392-C	0.01916	4E-10	(UGT2B15)	0.3471	NR unit increase	Illumina [1671387] (imputed)	N
1702	chr4	146480110	146480111	rs15392	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q31.21	NR	rs15392-C	0.01916	2E-12	(UGT1A9)	0.4144	NR unit increase	Illumina [1671387] (imputed)	N
1702	chr4	146480447	146480448	rs13145825	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	4q31.21	NR	rs13145825-C	0.56151	9E-14		0.013826	[0.01-0.017] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
1702	chr4	146485655	146485656	rs11100888	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	4q31.21		rs11100888-A	0.486113	3E-9		0.0245405	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
1702	chr4	146487323	146487324	rs11939702	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	4q31.21		rs11939702-?	NR	7E-9				NR [~ 8900000] (imputed)	N
1702	chr4	146524559	146524560	rs6813264	26989097	Coleman JR	2016-03-17	Br J Psychiatry	Genome-wide association study of response to cognitive-behavioural therapy in children with anxiety disorders.	Response to cognitive-behavioural therapy in anxiety disorder	Up to 902 European ancestry cases, up to 78 cases	NA	4q31.21	SMAD1, MMAA, C4orf51, ZNF827	rs6813264-?	0.41	5E-6	(6-month follow-up)			Illumina [3017604] (imputed)	N
1703	chr4	146660883	146660884	rs77866798	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	4q31.21		rs77866798-?	NR	3E-10				NR [~ 8900000] (imputed)	N
1704	chr4	146672391	146672392	rs183966199	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	4q31.21	C4orf51	rs183966199-C	0.013897	3E-10		0.06858907	[0.047-0.09] unit increase	Affymetrix [93095623] (imputed)	N
1704	chr4	146697062	146697063	rs6818581	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	4q31.21	NR	rs6818581-G	0.0113	9E-6	(EA)	0.1608	[0.09-0.232] unit decrease	Illumina [~ 11800000] (imputed)	N
1704	chr4	146722151	146722152	rs6854834	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	4q31.21	NR	rs6854834-A	0.14	2E-10		0.0168	[0.012-0.022] unit decrease	NR [NR]	N
1704	chr4	146727470	146727471	rs59690854	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	4q31.21		rs59690854-C	NR	3E-13		0.0169	[0.012-0.021] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
1704	chr4	146731528	146731529	rs59831926	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	4q31.21	NR	rs59831926-C	NR	7E-24		0.0402	[0.032-0.048] unit increase	Affymetrix [9000000] (imputed)	N
1704	chr4	146732653	146732654	rs17806780	30557370	Baas J	2018-12-17	PLoS One	Genome wide association study to identify predictors for severe skin toxicity in colorectal cancer patients treated with cetuximab.	Severe skin toxicity response to cetuximab in colorectal cancer	36 cases, 246 controls with no or mild skin toxicity	NA	4q31.21	ZNF827	rs17806780-?	NR	3E-7		25.0	[2.86-100]	Illumina [5830976] (imputed)	N
1704	chr4	146732653	146732654	rs17806780	29367611	Gao B	2018-01-24	Sci Rep	Genome-wide association study of paclitaxel and carboplatin disposition in women with epithelial ovarian cancer.	Carboplatin disposition in epthelial ovarian cancer	42 European ancestry cases, 14 Asian ancestry cases	NA	4q31.21	ZNF827	rs17806780-?	NR	9E-6		1.484	unit increase (EA)	Illumina [610255]	N
1704	chr4	146740624	146740625	rs12646351	30557370	Baas J	2018-12-17	PLoS One	Genome wide association study to identify predictors for severe skin toxicity in colorectal cancer patients treated with cetuximab.	Severe skin toxicity response to cetuximab in colorectal cancer	36 cases, 246 controls with no or mild skin toxicity	NA	4q31.21	ZNF827	rs12646351-?	NR	2E-7		25.0	[3.03-100]	Illumina [5830976] (imputed)	N
1704	chr4	146756404	146756405	rs4835021	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	4q31.21		rs4835021-?	NR	2E-13		0.00812928	[0.006-0.0103] unit decrease	NR [NR]	N
1704	chr4	146765559	146765560	rs4835260	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	4q31.21		rs4835260-A	NR	1E-17		0.021	[0.016-0.026] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
1704	chr4	146766535	146766536	rs4345206	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	4q31.21	ZNF827	rs4345206-T	0.464	9E-8		0.034	[0.022-0.046] unit increase	Affymetrix [7947838] (imputed)	N
1704	chr4	146769073	146769074	rs1027841	23942779	McGue M	2013-08-14	Behav Genet	A genome-wide association study of behavioral disinhibition.	Behavioural disinhibition (generation interaction)	3,852 European ancestry parents, 3,336 European ancestry offspring	NA	4q31.21	NR	rs1027841-A	0.162	2E-6	(Non-substance related behavioral disinhibition)			Illumina [527829]	N
1704	chr4	146769436	146769437	rs78256126	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	4q31.21	NR	rs78256126-G	NR	8E-30		0.0929	[0.077-0.109] unit increase	Affymetrix [9000000] (imputed)	N
1704	chr4	146775299	146775300	rs7685277	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	4q31.21	ZNF827	rs7685277-A	0.16	5E-15		7.82	z-score increase	Affymetrix [4311822] (imputed)	N
1704	chr4	146782836	146782837	rs35879803	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	4q31.21	ZNF827	rs35879803-A	0.3247	1E-6		0.0333	[0.02-0.047] unit decrease	NR [8041861] (imputed)	N
1704	chr4	146783505	146783506	rs6810898	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	4q31.21	NR	rs6810898-G	NR	4E-14		0.0391	[0.029-0.049] unit increase	Affymetrix [9000000] (imputed)	N
1704	chr4	146783505	146783506	rs6810898	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	4q31.21	NR	rs6810898-G	NR	1E-9		0.0314	[0.021-0.042] unit increase	Affymetrix [9000000] (imputed)	N
1704	chr4	146787240	146787241	rs35146602	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Gamma glutamyl transferase levels in low alcohol consumption	8,716 individuals	NA	4q31.21	NR	rs35146602-?	NR	3E-7		0.0285	[0.018-0.039] unit increase	Illumina [~ 7800000] (imputed)	N
1704	chr4	146789484	146789485	rs7669911	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	150,068 East Asian ancestry individuals	NA	4q31.21		rs7669911-T	0.364399	2E-12		0.0255554	[0.018-0.033] unit increase	Illumina [13478956] (imputed)	N
1704	chr4	146790820	146790821	rs28588718	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	4q31.21	NR	rs28588718-T	NR	4E-25		0.0656	[0.053-0.078] unit increase	Affymetrix [9000000] (imputed)	N
1704	chr4	146791128	146791129	rs13147616	34387878	Kim KY	2021-08-13	Hepatology	Genome-wide association of individual vulnerability with alcoholic liver disease: A Korean Genome and Epidemiology Study.	Alcohol-associated liver disease in non drinkers	782 Korean ancestry cases, 18,058 Korean ancestry controls	NA	4q31.21		rs13147616-?	NR	3E-8		1.334	[1.205-1.476]	Affymetrix [7975321] (imputed)	N
1704	chr4	146793626	146793627	rs4293803	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q31.21	NR	rs4293803-C	0.21127	2E-10				Affymetrix, Illumina [24332387] (imputed)	N
1704	chr4	146794620	146794621	rs4547811	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	4q31.21		rs4547811-C	NR	3E-44		0.0326	[0.028-0.037] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
1704	chr4	146794620	146794621	rs4547811	22001757	Chambers JC	2011-10-16	Nat Genet	Genome-wide association study identifies loci influencing concentrations of liver enzymes in plasma.	Liver enzyme levels (gamma-glutamyl transferase)	Up to 52,350 European ancestry individuals, up to 8,739 Indian Asian ancestry individuals	NA	4q31.21	ZNF827	rs4547811-C	0.18	3E-27		6.4	[5.00-7.90] % increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1704	chr4	146797537	146797538	rs10024759	34387878	Kim KY	2021-08-13	Hepatology	Genome-wide association of individual vulnerability with alcoholic liver disease: A Korean Genome and Epidemiology Study.	Alcohol-associated liver disease in light drinkers	1,379 Korean ancestry cases, 13,132 Korean ancestry controls	NA	4q31.21		rs10024759-?	NR	3E-9		1.273	[1.175-1.38]	Affymetrix [7975321] (imputed)	N
1705	chr4	146800814	146800815	rs1979974	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta maximum area	31,908 individuals	NA	4q31.21		rs1979974-A	0.52476	4E-9		0.0451114	[0.03-0.06] decrease	Affymetrix [NR]	N
1705	chr4	146800814	146800815	rs1979974	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	150,545 East Asian ancestry individuals	NA	4q31.21		rs1979974-G	0.358908	7E-10		0.0218141	[0.015-0.029] unit increase	Illumina [13478866] (imputed)	N
1705	chr4	146800921	146800922	rs17020769	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta minimum area	35,110 individuals	NA	4q31.21		rs17020769-C	0.524457	7E-10		0.0448731	[0.031-0.058] decrease	Affymetrix [NR]	N
1705	chr4	146800921	146800922	rs17020769	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	4q31.21		rs17020769-T	NR	2E-11		0.0122	[0.0087-0.0157] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
1705	chr4	146801001	146801002	rs13128814	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	4q31.21	ZNF827	rs13128814-G	0.5618	3E-8		0.144	[0.093-0.195] mmHg decrease	Affymetrix [NR] (imputed)	N
1705	chr4	146808681	146808682	rs7679068	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x short total sleep time interaction (2df test)	2,974 African American short sleepers, 365 Chinese ancestry short sleepers, 110 Asian ancestry short sleepers, at least 8,230 European ancestry short sleepers, 1,079 Hispanic/Latino short sleepers, 11,801 African American controls, 1,425 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,097 European ancestry controls, 4,023 Hispanic/Latino controls	at least 214 African American short sleepers, 629 East Asian ancestry short sleepers, up to 6,761 European ancestry short sleepers, 2,473 Hispanic short sleepers, at least 913 African American controls, 2,504 East Asian ancestry controls, up to 26,764 European ancestry controls, 9,854 Hispanic controls	4q31.21	ZNF827	rs7679068-?	NR	2E-9		0.4651	[0.13-0.8] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1705	chr4	146808681	146808682	rs7679068	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x short total sleep time interaction (2df test)	2,974 African American short sleepers, 365 Chinese ancestry short sleepers, 110 Asian ancestry short sleepers, at least 8,230 European ancestry short sleepers, 1,079 Hispanic/Latino short sleepers, 11,801 African American controls, 1,425 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,097 European ancestry controls, 4,023 Hispanic/Latino controls	at least 214 African American short sleepers, 629 East Asian ancestry short sleepers, up to 6,761 European ancestry short sleepers, 2,473 Hispanic short sleepers, at least 913 African American controls, 2,504 East Asian ancestry controls, up to 26,764 European ancestry controls, 9,854 Hispanic controls	4q31.21	ZNF827	rs7679068-?	NR	1E-7	(Asian)	1.634	[0.65-2.62] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1705	chr4	146809577	146809578	rs36007872	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	133,471 East Asian ancestry individuals	NA	4q31.21		rs36007872-T	0.353014	9E-70		0.0645998	[0.057-0.072] unit increase	Illumina [13476165] (imputed)	N
1705	chr4	146809997	146809998	rs10006310	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	4q31.21	ZNF827	rs10006310-?	NR	3E-9		0.0290661	[0.019-0.039] unit decrease	Illumina [4804024] (imputed)	N
1705	chr4	146814639	146814640	rs7666150	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	4q31.21	ZNF827	rs7666150-T		1E-7		0.206	unit increase	Affymetrix [at least 2696785] (imputed)	N
1705	chr4	146814639	146814640	rs7666150	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	4q31.21	ZNF827	rs7666150-T		6E-9		0.15	unit increase	Affymetrix [at least 2696785] (imputed)	N
1705	chr4	146814640	146814641	rs7682289	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Alanine aminotransferase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	4q31.21	ZNF827	rs7682289-?		8E-13		0.0274	[0.02-0.035] unit decrease	Illumina [31500000] (imputed)	N
1705	chr4	146821409	146821410	rs4835265	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	4q31.22		rs4835265-A	NR	4E-317		0.0893	[0.085-0.094] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
1705	chr4	146821409	146821410	rs4835265	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	4q31.22		rs4835265-A	NR	3E-64		0.0395	[0.035-0.044] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
1705	chr4	146821409	146821410	rs4835265	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Aspartate aminotransferase levels	386,570 British ancestry individuals, 10,617 Asian or Asian British individuals, 7,426 Black or Black British individuals, 2,321 Chinese ancestry individuals	NA	4q31.22	ZNF827	rs4835265-?	NR	9E-46		0.0047	[0.0039-0.0055] unit increase	Affymetrix [21347608] (imputed)	N
1705	chr4	146821409	146821410	rs4835265	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Alanine aminotransferase levels	387,859 British ancestry individuals, 10,635 Asian or Asian British individuals, 7,468 Black or Black British individuals, 2,338 Chinese ancestry individuals	NA	4q31.22	ZNF827	rs4835265-?	NR	2E-76		0.0102	[0.009-0.0114] unit increase	Affymetrix [21347608] (imputed)	N
1705	chr4	146821409	146821410	rs4835265	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	4q31.22	ZNF827	rs4835265-C	0.84187	1E-300		0.0283533	[0.027-0.03] unit decrease	Affymetrix [13995440] (imputed)	N
1705	chr4	146821409	146821410	rs4835265	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	4q31.22	ZNF827	rs4835265-C	0.841866	6E-15		0.00246647	[0.0018-0.0031] unit decrease	Affymetrix [13995440] (imputed)	N
1705	chr4	146821409	146821410	rs4835265	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	4q31.22	ZNF827	rs4835265-C	0.841885	8E-76		0.0096823	[0.0086-0.0107] unit decrease	Affymetrix [13995440] (imputed)	N
1705	chr4	146821409	146821410	rs4835265	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	4q31.22	ZNF827	rs4835265-A	0.16	5E-46		14.2	z-score increase	Affymetrix [4314223] (imputed)	N
1705	chr4	146821409	146821410	rs4835265	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	4q31.22	ZNF827	rs4835265-A	0.16	2E-62		16.7	z-score increase	Affymetrix [4312306] (imputed)	N
1705	chr4	146821409	146821410	rs4835265	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	4q31.22	NR	rs4835265-A	NR	6E-13		0.0235	[0.017-0.03] unit increase	Affymetrix [9000000] (imputed)	N
1705	chr4	146821409	146821410	rs4835265	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	4q31.22	NR	rs4835265-A	NR	3E-265		0.1132	[0.11-0.12] unit increase	Affymetrix [9000000] (imputed)	N
1705	chr4	146821409	146821410	rs4835265	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	4q31.22	NR	rs4835265-A	NR	6E-41		0.0438	[0.037-0.05] unit decrease	Affymetrix [9000000] (imputed)	N
1705	chr4	146821409	146821410	rs4835265	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	4q31.22	NR	rs4835265-A	NR	3E-39		0.0428	[0.036-0.049] unit increase	Affymetrix [9000000] (imputed)	N
1705	chr4	146821409	146821410	rs4835265	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	4q31.22	NR	rs4835265-A	NR	3E-67		0.0565	[0.05-0.063] unit increase	Affymetrix [9000000] (imputed)	N
1705	chr4	146821409	146821410	rs4835265	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Gamma glutamyl transferase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	4q31.22	ZNF827	rs4835265-?		3E-61		0.0723	[0.064-0.081] unit decrease	Illumina [31500000] (imputed)	N
1705	chr4	146821409	146821410	rs4835265	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Aspartate aminotransferase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	4q31.22	ZNF827	rs4835265-?		2E-11		0.0271	[0.019-0.035] unit decrease	Illumina [31500000] (imputed)	N
1705	chr4	146821409	146821410	rs4835265	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	4q31.22		rs4835265-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1705	chr4	146821409	146821410	rs4835265	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Gamma glutamyl transferase levels	118,309 Japanese ancestry individuals	NA	4q31.22	ZNF827	rs4835265-?	NR	1E-58		0.07054	[0.062-0.079] unit increase novel	Illumina [6108953] (imputed)	N
1705	chr4	146821409	146821410	rs4835265	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Aspartate aminotransferase levels	134,154 Japanese ancestry individuals	NA	4q31.22	ZNF827	rs4835265-?	NR	4E-11		0.02643	[0.019-0.034] unit increase novel	Illumina [6108953] (imputed)	N
1705	chr4	146821409	146821410	rs4835265	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Alanine transaminase levels	134,182 Japanese ancestry individuals	NA	4q31.22	ZNF827	rs4835265-?	NR	3E-8		0.02242	[0.014-0.03] unit increase	Illumina [6108953] (imputed)	N
1705	chr4	146821409	146821410	rs4835265	21909109	Kim YJ	2011-09-11	Nat Genet	Large-scale genome-wide association studies in East Asians identify new genetic loci influencing metabolic traits.	Gamma glutamyl transpeptidase	12,545 Korean ancestry individuals	Up to 30,395 East Asian ancestry individuals	4q31.22	ZNF827	rs4835265-T	0.42	1E-14		0.0043	[0.0031-0.0055] IU/L decrease	Affymetrix [~ 2200000] (imputed)	N
1705	chr4	146821724	146821725	rs4835266	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	4q31.22		rs4835266-?	NR	8E-17				NR [~ 8900000] (imputed)	N
1705	chr4	146831322	146831323	rs12510175	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	4q31.22	NR	rs12510175-C	0.66	5E-10		0.012	[0.0082-0.0158] unit increase	NR [NR]	N
1705	chr4	146835789	146835790	rs6816078	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	4q31.22		rs6816078-?	NR	3E-18		0.0187174	[0.015-0.023] unit increase	Affymetrix [20259828] (imputed)	N
1705	chr4	146840076	146840077	rs1567224	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	4q31.22		rs1567224-?	NR	5E-18				NR [~ 8900000] (imputed)	N
1705	chr4	146840490	146840491	rs576668364	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	4q31.22	ZNF827	rs576668364-T	0.01324	2E-10		0.07147419	[0.05-0.093] unit increase	Affymetrix [93095623] (imputed)	N
1705	chr4	146842501	146842502	rs12641158	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Dorea)	1,068 Japanese ancestry individuals	NA	4q31.22	ZNF827	rs12641158-G	0.28	5E-6	(male)	0.0495	[0.029-0.07] unit increase	Illumina [6380737] (imputed)	N
1705	chr4	146844103	146844104	rs2135963	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	4q31.22	ZNF827	rs2135963-C	0.59766	5E-17		0.0158204	[0.012-0.02] unit increase	NR [13737936] (imputed)	N
1705	chr4	146845751	146845752	rs11930385	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	4q31.22		rs11930385-?	NR	2E-13				NR [~ 8900000] (imputed)	N
1705	chr4	146851784	146851785	rs10022648	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	4q31.22		rs10022648-?	NR	2E-17		0.0182538	[0.014-0.022] unit increase	Affymetrix [20259828] (imputed)	N
1705	chr4	146851784	146851785	rs10022648	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	4q31.22	ZNF827	rs10022648-A	0.614758	2E-7	(women)	0.0240762	[0.015-0.033] unit increase	NR [17166351] (imputed)	N
1705	chr4	146851784	146851785	rs10022648	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	4q31.22	ZNF827	rs10022648-A	0.614319	3E-11		0.022857	[0.016-0.03] unit increase	NR [17166351] (imputed)	N
1705	chr4	146853164	146853165	rs2048161	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	4q31.22	NR	rs2048161-G	NR	8E-17		0.0323	[0.025-0.04] unit increase	Affymetrix [9000000] (imputed)	N
1705	chr4	146853164	146853165	rs2048161	22610502	Kennedy RB	2012-05-19	Hum Genet	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IFN-alpha)	Up to 512 European ancestry individuals, up to 199 African American individuals	NA	4q31.22	ZNF827	rs2048161-A		6E-12	(AA)			Illumina [NR]	N
1705	chr4	146860185	146860186	rs7679276	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	4q31.22	ZNF827	rs7679276-A	0.0456	6E-12		0.033	[0.024-0.042] unit increase	Affymetrix [18391927] (imputed)	N
1705	chr4	146874227	146874227	rs56935123	28139693	Hoffmann TJ	2017-01-31	Nat Commun	Genome-wide association study of prostate-specific antigen levels identifies novel loci independent of prostate cancer.	Prostate-specific antigen levels	28,503 European ancestry individuals	2,716 Latino individuals, 2,518 East Asian ancestry individuals, 1,585 African American individuals, 6,193 European ancestry individuals (later diagnosed with prostate cancer), 5,603 European ancestry individuals	4q31.22	ZNF827	rs56935123-AT	0.45	4E-9		0.0351137	[0.023-0.047] unit increase	Affymetrix [10109774] (imputed)	N
1705	chr4	146875550	146875551	rs723794	23470693	Zeng Z	2013-03-07	J Dent Res	Genome-wide association studies of pit-and-fissure- and smooth-surface caries in permanent dentition.	Smooth-surface caries	982 European ancestry individuals	NA	4q31.22	NR	rs723794-G	0.2686	6E-7		3.645	[NR] unit increase	Illumina [1200000] (imputed)	N
1705	chr4	146879236	146879237	rs72725734	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	4q31.22	NR	rs72725734-G	NR	1E-8		1.052	[1.03-1.07]	Affymetrix, Illumina [29235255] (imputed)	N
1705	chr4	146886083	146886084	rs112588828	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	4q31.22		rs112588828-G	0.36	1E-14		7.7	z score increase	Affymetrix [9061022] (imputed)	N
1705	chr4	146886083	146886084	rs112588828	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	4q31.22	NR	rs112588828-G	0.4282	1E-13				NR [9056863] (imputed)	N
1705	chr4	146893951	146893952	rs4543136	34288885	Lin WD	2021-07-01	Eur J Endocrinol	Genetic factors of idiopathic central precocious puberty and their polygenic risk in early puberty.	Idiopathic central precocious puberty	256 Han Chinese ancestry cases, 118 Han Chinese ancestry controls	65 Han Chinese ancestry cases, 30 Han Chinese ancestry controls	4q31.22		rs4543136-A	NR	1E-7		15.54	[5.6-43.11]	Affymetrix [NR] (imputed)	N
1705	chr4	146904303	146904304	rs11100904	23064961	Shaffer JR	2012-10-11	J Dent Res	GWAS of dental caries patterns in the permanent dentition.	Dental caries	920 European ancestry individuals	NA	4q31.22	ZNF827	rs11100904-?	NR	2E-6	(DMFS3)			Illumina [518997]	N
1705	chr4	146919150	146919151	rs9762091	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	4q31.22		rs9762091-A	0.36	3E-12		6.98	z score increase	Affymetrix [9061022] (imputed)	N
1706	chr4	146936846	146936847	rs7688003	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	4q31.22		rs7688003-A	0.44	3E-9		5.92	z score increase	Affymetrix [9061022] (imputed)	N
1706	chr4	146957495	146957496	rs7662591	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	4q31.22	NR	rs7662591-G	0.3884	5E-11				NR [9056863] (imputed)	N
1706	chr4	146985626	146985627	rs12642634	27802415	Salvi E	2016-10-31	Hypertension	Genome-Wide and Gene-Based Meta-Analyses Identify Novel Loci Influencing Blood Pressure Response to Hydrochlorothiazide.	Systolic blood pressure response to hydrochlorothiazide in hypertension	1,739 European ancestry individuals	430 African American individuals	4q31.22	ZNF827, LSM6	rs12642634-A	0.78	5E-6	(EA)	1.1	[NR] mmHg increase	Affymetrix, Illumina [up to 2500000] (imputed)	N
1706	chr4	147040942	147040943	rs186699656	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.22	LOC100505545	rs186699656-T	0.999	1E-6	(AA)	0.239	unit increase	Illumina [NR] (imputed)	N
1707	chr4	147170556	147170557	rs13147128	32472697	Verma SS	2020-05-30	Clin Pharmacol Ther	Genome-wide association study of platelet reactivity and cardiovascular response in patients treated with clopidogrel: a study by the International Clopidogrel Pharmacogenomics Consortium (ICPC).	Cardiovascular death or myocardial infarction in response to clopidogrel treatment	102 European ancestry cases, 2,068 European ancestry controls	NA	4q31.22	intergenic	rs13147128-C	0.607027	3E-6		1.9768566	NR	Illumina [5009928] (imputed)	N
1708	chr4	147268136	147268137	rs6846584	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Bipolar disorder vs anorexia nervosa (ordinary least squares (OLS))	20,352 bipolar disorder cases, 16,992 anorexia nervosa cases	NA	4q31.22		rs6846584-?	NR	9E-9		0.021	NR unit decrease	NR [5569514] (imputed)	N
1708	chr4	147296929	147296930	rs72729847	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	4q31.22	SLC10A7	rs72729847-C	0.1995	1E-10		1.0307637		Affymetrix [11880941] (imputed)	N
1709	chr4	147351351	147351352	rs75693043	33483693	Clements CC	2021-01-22	Mol Psychiatry	Genome-wide association study of patients with a severe major depressive episode treated with electroconvulsive therapy.	Major depressive episode treated with electroconvulsive therapy	2,725 European ancestry cases, 3,290 European ancestry controls	NA	4q31.22	NR	rs75693043-?	NR	4E-6		1.3981	[1.26-1.54]	Illumina [NR] (imputed)	N
1709	chr4	147354088	147354089	rs113079574	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		4q31.22	SLC10A7	rs113079574-C	0.807329	3E-8		0.00965155	[0.0062-0.0131] unit increase	Affymetrix [12370749]	N
1709	chr4	147354088	147354089	rs113079574	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	4q31.22	NR	rs113079574-?	NR	5E-12				Affymetrix [~ 8270000] (imputed)	N
1709	chr4	147354088	147354089	rs113079574	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	4q31.22		rs113079574-?	NR	6E-12				NR [~ 8900000] (imputed)	N
1709	chr4	147360130	147360131	rs191493117	24159190	Seppala I	2013-10-24	Eur Heart J	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Serum dimethylarginine levels (asymmetric/symetric ratio)	5110 European ancestry individuals	NA	4q31.22	NR	rs191493117-C	0.998	3E-6		2.057	[1.2-2.92] unit decrease	Affymetrix, Illumina [10085758] (imputed)	N
1709	chr4	147438018	147438019	rs3914628	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	4q31.22	NA	rs3914628-T	0.8593	7E-13		0.0165	[0.012-0.021] unit increase	NR [~ 27400000] (imputed)	N
1710	chr4	147499337	147499338	rs10213084	23583979	den Hoed M	2013-04-14	Nat Genet	Identification of heart rate-associated loci and their effects on cardiac conduction and rhythm disorders.	Heart rate	85,787 European ancestry individuals, 6,568 Indian Asian ancestry indiviudals	88,823 European ancestry individuals	4q31.22	SLC10A7	rs10213084-G	0.869	4E-6				Affymetrix, Illumina [2516789] (imputed)	N
1712	chr4	147764386	147764387	rs10029061	32579418	Maukonen M	2020-06-24	J Biol Rhythms	Genetic Associations of Chronotype in the Finnish General Population.	Evening vs. morning chronotype (self-assessed)	3,759 Finnish ancestry evening individuals , 4,674 Finnish ancestry morning individuals	NA	4q31.22	TTC29	rs10029061-T	NR	1E-6		1.18016	[1.1039-1.26168]	Illumina [5842835] (imputed)	N
1712	chr4	147769211	147769212	rs6840804	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	4q31.22	NR	rs6840804-A	NR	2E-8		5.592	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1712	chr4	147772418	147772419	rs1876765	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	4q31.22	NR	rs1876765-?	NR	1E-7		5.333	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1712	chr4	147797213	147797214	rs10001365	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	4q31.22		rs10001365-G	0.614	3E-19		0.011	[0.009-0.013] unit increase	NR [NR] (imputed)	N
1712	chr4	147797213	147797214	rs10001365	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	4q31.22	NR	rs10001365-A	0.394	3E-30		0.0125846	[0.01-0.015] unit decrease	NR [9732723] (imputed)	N
1712	chr4	147797213	147797214	rs10001365	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	4q31.22	NR	rs10001365-A	0.39	9E-17		0.0124203	[0.0095-0.0153] unit increase	NR [9732723] (imputed)	N
1712	chr4	147797912	147797913	rs13110073	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	4q31.22	NR	rs13110073-C	0.395	3E-21		0.024642577	[0.02-0.03] unit decrease	NR [~ 10000000] (imputed)	N
1712	chr4	147803577	147803578	rs6852084	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	4q31.22	Intergenic	rs6852084-A	0.615	3E-10		0.0147	[0.01-0.019] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1712	chr4	147805501	147805502	rs185348880	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	4q31.22	Intergenic	rs185348880-?		6E-6		1.13	[1.07-1.19]	Illumina [7645193] (imputed)	N
1712	chr4	147805501	147805502	rs185348880	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	4q31.22	Intergenic	rs185348880-?		8E-7		3.42	[2.10-5.57]	Illumina [7645193] (imputed)	N
1712	chr4	147811444	147811445	rs34216058	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	4q31.22	Intergenic	rs34216058-T	0.3784	1E-13	(MTAG)	0.0176	[0.013-0.022] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1712	chr4	147818464	147818465	rs34470581	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	4q31.22		rs34470581-?	NR	6E-11				NR [~ 8900000] (imputed)	N
1712	chr4	147844423	147844424	rs1995809	24535457	Chouraki V	2014-02-18	Mol Psychiatry	A genome-wide association meta-analysis of plasma A? peptides concentrations in the elderly.	Plasma amyloid beta peptide concentrations (ABx-40)	3,528 European ancestry individuals	NA	4q31.22	TTC29	rs1995809-G	0.054	2E-6		0.22	[0.12-0.32] unit increase	Illumina [2316178] (imputed)	N
1713	chr4	147868621	147868622	rs881591	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	4q31.22	Intergenic	rs881591-C	0.6127	2E-8		0.0112	[0.0073-0.0151] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1713	chr4	147869328	147869329	rs882189	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	4q31.22	Intergenic	rs882189-T	0.3898	5E-13	(MTAG)	0.0132	[0.0097-0.0167] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1713	chr4	147869328	147869329	rs882189	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	4q31.22	Intergenic	rs882189-T	0.3899	4E-18	(MTAG)	0.0147	[0.011-0.018] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1713	chr4	147871271	147871274	rs201027279	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	4q31.22		rs201027279-A	NR	3E-8		0.0107	[0.007-0.0144] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1713	chr4	147872711	147872712	rs2028126	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	4q31.22	NR	rs2028126-?	NR	3E-6		4.668	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1713	chr4	147872741	147872742	rs969512	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	4q31.22		rs969512-A	0.6596	1E-12		0.0106	[0.0077-0.0135] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1713	chr4	147874874	147874875	rs1469921	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	4q31.22	Intergenic	rs1469921-T	0.6111	8E-17	(MTAG)	0.0112	[0.0087-0.0137] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1713	chr4	147919277	147919278	rs7668995	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	4q31.22	TTC29	rs7668995-A	0.2924	1E-13		0.016343247	[0.012-0.021] unit decrease	Affymetrix [11514654] (imputed)	N
1713	chr4	147919277	147919278	rs7668995	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	4q31.22		rs7668995-?	NR	1E-15				NR [~ 8900000] (imputed)	N
1713	chr4	147925899	147925900	rs974278	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	4q31.22	POU4F2	rs974278-?	NR	1E-6	(TAG 58:12)	0.16744591	[0.1-0.23] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1713	chr4	147945732	147945733	rs7689452	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking cessation (MTAG)	up to 820,192 European ancestry individuals	NA	4q31.22	NR	rs7689452-G	0.315	4E-10		0.0103017	[0.0071-0.0135] unit decrease	NR [9732723] (imputed)	N
1713	chr4	147948149	147948150	rs3827592	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking initiation (ever regular vs never regular)	up to 433,216 European ancestry individuals	NA	4q31.22	TTC29	rs3827592-A	0.351	2E-10		0.0151	[0.01-0.02] unit decrease	Illumina [~ 250000] (imputed)	N
1713	chr4	147952240	147952241	rs17576594	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	4q31.22		rs17576594-G	0.724	2E-12		0.016	[0.012-0.02] unit increase	Affymetrix [up to 90000000] (imputed)	N
1713	chr4	147952591	147952592	rs10003663	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q31.22	NR	rs10003663-G	0.01045	7E-9	(FERMT2)	0.09501	NR unit increase	Illumina [1671387] (imputed)	N
1713	chr4	147976723	147976724	rs141644443	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.22	Intergenic	rs141644443-G	1.0	3E-8	(AA)	0.559	unit increase	Illumina [NR] (imputed)	N
1713	chr4	147976723	147976724	rs141644443	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q31.22	Intergenic	rs141644443-G	1.0	3E-6	(AA)	2.399	NR unit increase	Illumina [NR] (imputed)	N
1714	chr4	147985230	147985231	rs28717373	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking initiation	842,717 European ancestry individuals	NA	4q31.22	TTC29, EDNRA	rs28717373-T		3E-13		0.974	[NR]	Affymetrix [up to 79000000] (imputed)	N
1714	chr4	147985230	147985231	rs28717373	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	4q31.22	NR	rs28717373-T	0.356165	6E-10	(Conditioned on chr4:147797913)	0.016465696	[0.011-0.022] unit decrease	NR [~ 10000000] (imputed)	N
1714	chr4	148001516	148001517	rs17022539	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	4q31.22	NR	rs17022539-?	NR	6E-16				Affymetrix [NR]	N
1714	chr4	148013752	148013753	rs117809963	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	4q31.22	NR	rs117809963-?	NR	5E-6		10514.731	NR unit decrease	Illumina [2379855]	N
1714	chr4	148047549	148047550	rs1395821	21378988	Coronary Artery Disease (C4D) Genetics Consortium	2011-03-06	Nat Genet	A genome-wide association study in Europeans and South Asians identifies five new loci for coronary artery disease.	Coronary heart disease	8,424 European ancestry cases, 7,268 European ancestry controls, 6,996 South Asian ancestry cases, 7,794 South Asian ancestry controls	18,049 European ancestry cases, 16,357 European ancestry controls, 3,359 South Asian ancestry cases, 2,828 South Asian ancestry controls	4q31.22	intergenic	rs1395821-?	NR	7E-7				Illumina [574919]	N
1715	chr4	148234614	148234615	rs76700790	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	4q31.22	NR	rs76700790-?	NR	5E-6		3983.05	NR unit decrease	Illumina [2379855]	N
1716	chr4	148249053	148249054	rs77601419	30679421	Felsky D	2019-01-24	Nat Commun	Neuropathological correlates and genetic architecture of microglial activation in elderly human brain.	Proportion of activated microglia (inferior temporal cortex)	219 individuals	NA	4q31.22	intergenic	rs77601419-T	0.015	2E-6		0.1168	NR unit increase	NR [NR] (imputed)	N
1716	chr4	148256734	148256735	rs1366689	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q31.22	NR	rs1366689-C	0.193292	5E-10				Affymetrix, Illumina [24649327] (imputed)	N
1716	chr4	148268026	148268027	rs2163012	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	4q31.22		rs2163012-A	NR	2E-11		0.0147	[0.01-0.019] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1716	chr4	148268026	148268027	rs2163012	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	4q31.22		rs2163012-A	NR	3E-9		0.0145	[0.0098-0.0192] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
1716	chr4	148281000	148281001	rs4593108	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	4q31.22	intergenic	rs4593108-C	0.8022	8E-15		0.0627	[0.047-0.079] unit increase	NR [8041861] (imputed)	N
1716	chr4	148281000	148281001	rs4593108	26343387	Nikpay M	2015-09-07	Nat Genet	A comprehensive 1,000 Genomes-based genome-wide association meta-analysis of coronary artery disease.	Myocardial infarction	27,509 European ancestry cases, 130 African American cases, 278 Hispanic American cases, 10,257 South Asian ancestry cases, 288 Lebanese ancestry cases, 1,687 East Asian ancestry cases, 99,121 European ancestry controls, 2,778 African American controls, 3,337 Hispanic American controls, 12,899 South Asian ancestry controls, 466 Lebanese ancestry controls, 7,709 East Asian ancestry controls	NA	4q31.22	EDNRA	rs4593108-C	0.8	4E-7		1.07	[1.04-1.09]	Affymetrix, Illumina [8600000] (imputed)	N
1716	chr4	148281000	148281001	rs4593108	26343387	Nikpay M	2015-09-07	Nat Genet	A comprehensive 1,000 Genomes-based genome-wide association meta-analysis of coronary artery disease.	Coronary artery disease	42,096 European ancestry cases, 361 African American cases, 758 Hispanic American cases, 12,658 South Asian ancestry cases, 1,802 Lebanese ancestry cases, 3,614 East Asian ancestry cases, 99,121 European ancestry controls, 2,778 African American controls, 3,337 Hispanic American controls, 12,899 South Asian ancestry controls, 466 Lebanese ancestry controls, 7,709 East Asian ancestry controls	NA	4q31.22	EDNRA	rs4593108-C	0.795349	9E-10		1.07	[1.05- 1.10]	Affymetrix, Illumina [8600000] (imputed)	N
1716	chr4	148281811	148281812	rs1366691	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	4q31.22		rs1366691-T	NR	9E-9		0.0138	[0.0091-0.0185] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
1716	chr4	148281811	148281812	rs1366691	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q31.22	NR	rs1366691-T	0.730673	6E-10				Affymetrix, Illumina [23467995] (imputed)	N
1716	chr4	148282341	148282342	rs1429138	23064961	Shaffer JR	2012-10-11	J Dent Res	GWAS of dental caries patterns in the permanent dentition.	Dental caries	920 European ancestry individuals	NA	4q31.22	EDNRA	rs1429138-?	NR	2E-7	(DMFS2,DMFS5mand)			Illumina [518997]	N
1716	chr4	148284103	148284104	rs1429139	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	4q31.22	NR	rs1429139-A	0.788617	2E-11		0.018199384	[0.013-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1716	chr4	148284103	148284104	rs1429139	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	4q31.22	NR	rs1429139-A	0.788962	1E-10		0.01454	[0.01-0.019] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1716	chr4	148284103	148284104	rs1429139	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	4q31.22		rs1429139-?	NR	5E-11				NR [~ 8900000] (imputed)	N
1716	chr4	148288066	148288067	rs1429141	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 142,336 Japanese ancestry controls	NA	4q31.22	TTC29, EDNRA	rs1429141-?	NR	8E-11		0.0695854	[0.049-0.091] unit decrease	Illumina [19707525] (imputed)	N
1716	chr4	148290817	148290818	rs6810798	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	4q31.22	intergenic	rs6810798-A	0.202	8E-14		0.06	[0.044-0.076] unit decrease	Affymetrix [7947838] (imputed)	N
1716	chr4	148297051	148297052	rs12500103	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	4q31.22	NR	rs12500103-A	0.792783	2E-11		0.015742	[0.011-0.02] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1716	chr4	148322386	148322387	rs1429107	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	4q31.22	EDNRA	rs1429107-A	0.086	8E-6	(Hcy )	0.02	[NR] umol/L increase	Illumina [899892]	N
1716	chr4	148324308	148324309	rs13121109	26545630	Deming Y	2015-09-25	Neurobiol Aging	A potential endophenotype for Alzheimer's disease: cerebrospinal fluid clusterin.	Plasma clusterin levels	521 Alzheimer's disease cases, 297 controls	NA	4q31.22	EDNRA	rs13121109-?		6E-6				Illumina [5970354] (imputed)	N
1716	chr4	148365338	148365339	rs17612693	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	4q31.22	intergenic	rs17612693-A	0.151	6E-20		0.079	[0.061-0.097] unit increase	Affymetrix [7947838] (imputed)	N
1716	chr4	148370547	148370548	rs80157433	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls, 20,367 East Asian ancestry cases, 158,359 East Asian ancestry controls	NA	4q31.22		rs80157433-G	NR	2E-10		0.0537	[0.037-0.07] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1717	chr4	148378441	148378442	rs55965782	33199917	Bakker MK	2020-11-16	Nat Genet	Genome-wide association study of intracranial aneurysms identifies 17 risk loci and genetic overlap with clinical risk factors.	Intracranial aneurysm	7,495 European ancestry cases, 71,934 European ancestry controls	NA	4q31.22	NR	rs55965782-T	0.87	9E-18		0.2644	[0.2-0.32] unit increase	Affymetrix, Illumina [4471083] (imputed)	N
1717	chr4	148378603	148378604	rs56024659	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	4q31.22	intergenic	rs56024659-T	0.1807	3E-12		0.2303	[0.17-0.29] mmHg increase	Affymetrix [NR] (imputed)	N
1717	chr4	148383423	148383424	rs73855810	32469254	Matsunaga H	2020-05-29	Circ Genom Precis Med	Transethnic Meta-analysis of Genome-wide Association Studies Identifies Three New Loci and Characterizes Population-specific Differences for Coronary Artery Disease.	Coronary artery disease	15,302 Japanese ancestry cases, 76,014 European and East Asian ancestry cases, 36,140 Japanese ancestry controls, 264,785 European and East Asian ancestry controls	NA	4q31.22	TTC29, EDNRA	rs73855810-A	0.17	2E-12		1.07	[1.06-1.09]	Illumina [5167567] (imputed)	N
1717	chr4	148387700	148387701	rs58721068	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Unstable angina pectoris	5,891 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	4q31.22		rs58721068-G	0.309303473	4E-11		0.13952497	[0.098-0.181] unit increase	Illumina [13425416] (imputed)	N
1717	chr4	148387700	148387701	rs58721068	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cerebral aneurysm	3,132 East Asian ancestry cases, 152,022 East Asian ancestry controls	NA	4q31.22		rs58721068-G	0.311783756	5E-12		0.19741464	[0.14-0.25] unit decrease	Illumina [13426064] (imputed)	N
1717	chr4	148387700	148387701	rs58721068	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Cerebral aneurysm	2,820 Japanese ancestry cases, 192,383 Japanese ancestry controls	NA	4q31.22		rs58721068-G	0.318412345	4E-12		0.8139186	[0.768011754-0.862569481]	Illumina [8919992] (imputed)	N
1717	chr4	148391702	148391703	rs5981626	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (salicylic acid and derivatives)	41,461 East Asian ancestry cases, 137,265 East Asian ancestry controls	NA	4q31.22		rs5981626-T	0.311135887	8E-9		0.052426334	[0.035-0.07] unit increase	Illumina [13429980] (imputed)	N
1717	chr4	148391702	148391703	rs5981626	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cerebral aneurysm	945 European ancestry cases, 472,738 European ancestry controls, 3,132 East Asian ancestry cases, 152,022 East Asian ancestry controls	NA	4q31.22		rs5981626-T	NR	8E-13		0.1967	[0.14-0.25] unit decrease	Affymetrix, Illumina [25841674] (imputed)	N
1717	chr4	148392727	148392728	rs6823438	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antithrombotic agents)	67,653 European ancestry cases, 85,986 European ancestry controls, 54,220 East Asian ancestry cases, 124,506 East Asian ancestry controls	NA	4q31.22		rs6823438-T	NR	3E-9		0.0378	[0.025-0.05] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1717	chr4	148392727	148392728	rs6823438	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antithrombotic agents)	54,220 East Asian ancestry cases, 124,506 East Asian ancestry controls	NA	4q31.22		rs6823438-T	0.311292804	4E-8		0.046704426	[0.03-0.063] unit increase	Illumina [13429980] (imputed)	N
1717	chr4	148393663	148393664	rs1878406	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	4q31.22	TTC29, EDNRA	rs1878406-C		2E-9		0.321	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1717	chr4	148393663	148393664	rs1878406	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	4q31.22	TTC29, EDNRA	rs1878406-C		7E-6		0.224	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1717	chr4	148393663	148393664	rs1878406	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	4q31.22	TTC29, EDNRA	rs1878406-C		2E-6	(EA)	0.269	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1717	chr4	148393663	148393664	rs1878406	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	4q31.22	TTC29, EDNRA	rs1878406-C		4E-16		0.292	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1717	chr4	148393663	148393664	rs1878406	24262325	Dichgans M	2013-11-21	Stroke	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Coronary artery disease	33,398 cases, 75,726 controls	NA	4q31.22	EDNRA	rs1878406-T	NR	1E-6		1.1	[1.06-1.14]	Illumina [575000] (imputed)	N
1717	chr4	148393663	148393664	rs1878406	21909108	Bis JC	2011-09-11	Nat Genet	Meta-analysis of genome-wide association studies from the CHARGE consortium identifies common variants associated with carotid intima media thickness and plaque.	Carotid intima media thickness	Up to 31,211 European ancestry individuals	10,553 European ancestry individuals, 687 Orcadian individuals	4q31.22	EDNRA	rs1878406-T	0.13	7E-7	(cIMT)	0.0087	[0.01-0.01] per unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1717	chr4	148393663	148393664	rs1878406	21909108	Bis JC	2011-09-11	Nat Genet	Meta-analysis of genome-wide association studies from the CHARGE consortium identifies common variants associated with carotid intima media thickness and plaque.	Carotid intima media thickness	Up to 31,211 European ancestry individuals	10,553 European ancestry individuals, 687 Orcadian individuals	4q31.22	EDNRA	rs1878406-T	0.13	7E-12	(Plaque)	0.1993	[0.14-0.26] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1717	chr4	148395284	148395284	rs11413744	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Peripheral artery disease	7,114 European ancestry cases, 475,964 European ancestry controls, 4,112 East Asian ancestry cases, 173,601 East Asian ancestry controls	NA	4q31.22		rs11413744-GT	NR	8E-10		0.1102	[0.075-0.145] unit increase	Affymetrix, Illumina [25844651] (imputed)	N
1717	chr4	148395284	148395284	rs11413744	30510157	Franceschini N	2018-12-03	Nat Commun	GWAS and colocalization analyses implicate carotid intima-media thickness and carotid plaque loci in cardiovascular outcomes.	Carotid plaque	Up to 21,540 European ancestry cases, up to 26,894 European ancestry controls	NA	4q31.22	EDNRA	rs11413744-?	0.86	4E-10		0.1586	[0.11-0.21] unit decrease	Affymetrix, Illumina [8578107] (imputed)	N
1717	chr4	148396093	148396094	rs6537481	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (vasodilators used in cardiac diseases)	17,050 East Asian ancestry cases, 161,676 East Asian ancestry controls	NA	4q31.22		rs6537481-G	0.311247724	5E-11		0.08553404	[0.06-0.111] unit increase	Illumina [13429980] (imputed)	N
1717	chr4	148396093	148396094	rs6537481	30541042	Walsh N	2018-12-12	J Natl Cancer Inst	Agnostic Pathway/Gene Set Analysis of Genome-Wide Association Data Identifies Associations for Pancreatic Cancer.	Pancreatic ductal adenocarcinoma	9,040 European ancestry cases, 12,496 European ancestry controls	NA	4q31.22	EDNRA	rs6537481-A	NR	1E-7		1.1363636	[1.09-1.2]	NR [NR]	N
1717	chr4	148396093	148396094	rs6537481	29422604	Klein AP	2018-02-08	Nat Commun	Genome-wide meta-analysis identifies five new susceptibility loci for pancreatic cancer.	Pancreatic cancer	9,040 European ancestry cases, 12,496 European ancestry controls	up to 2,737 cases, up to 4,752 controls	4q31.22	EDNRA	rs6537481-A	0.75	4E-6		1.1111112	[1.06-1.15]	Illumina [11381182] (imputed)	N
1717	chr4	148397697	148397697	rs149299884	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Angina pectoris	30,025 European ancestry cases, 440,906 European ancestry controls, 14,007 East Asian ancestry cases, 145,158 East Asian ancestry controls	NA	4q31.22		rs149299884-CA	NR	9E-26		0.1048	[0.085-0.124] unit increase	Affymetrix, Illumina [25842036] (imputed)	N
1717	chr4	148397750	148397751	rs73855814	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (vasodilators used in cardiac diseases)	5,546 European ancestry cases, 237,113 European ancestry controls, 17,050 East Asian ancestry cases, 161,676 East Asian ancestry controls	NA	4q31.22		rs73855814-T	NR	4E-14		0.0888	[0.066-0.112] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1717	chr4	148398876	148398877	rs7659823	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	4q31.22		rs7659823-G	NR	7E-14		0.0161	[0.012-0.02] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
1717	chr4	148400010	148400011	rs72957606	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	20,917 European ancestry cases, 440,906 European ancestry controls, 14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	4q31.22		rs72957606-G	NR	3E-21		0.1028	[0.082-0.124] unit increase	Affymetrix, Illumina [25841367] (imputed)	N
1717	chr4	148400255	148400256	rs10305838	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Unstable angina pectoris	9,481 European ancestry cases, 446,987 European ancestry controls, 5,891 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	4q31.22		rs10305838-C	NR	1E-16		0.1297	[0.099-0.16] unit increase	Affymetrix, Illumina [25840389] (imputed)	N
1717	chr4	148400255	148400256	rs10305838	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Stable angina pectoris	17,894 European ancestry cases, 325,132 European ancestry controls, 18,833 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	4q31.22		rs10305838-C	NR	2E-20		0.0942	[0.074-0.114] unit increase	Affymetrix, Illumina [20456336] (imputed)	N
1717	chr4	148400818	148400819	rs6842241	35132056	Mitchell BL	2022-02-07	Nat Commun	Genome-wide association meta-analysis identifies 29 new acne susceptibility loci.	acne vulgaris	20,165 European ancestry cases, 595,231 European ancestry controls	NA	4q31.22	NR	rs6842241-C	0.8622	2E-8		1.1	[1.06-1.14]	Affymetrix, Illumina [7072771] (imputed)	N
1717	chr4	148400818	148400819	rs6842241	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	4q31.22	EDNRA	rs6842241-A	0.1668	1E-23		0.081	[0.065-0.097] unit increase	NR [8041861] (imputed)	N
1717	chr4	148400818	148400819	rs6842241	26488411	Matsukura M	2015-10-21	PLoS One	Genome-Wide Association Study of Peripheral Arterial Disease in a Japanese Population.	Peripheral artery disease	785 Japanese ancestry cases, 3,383 Japanese ancestry controls	2,379 Japanese ancestry cases, 16,752 Japanese ancestry controls	4q31.22	EDNRA	rs6842241-C	NR	5E-9		1.18	[1.11-1.25]	Illumina [431666]	N
1717	chr4	148400818	148400819	rs6842241	22286173	Low SK	2012-01-27	Hum Mol Genet	Genome-wide association study for intracranial aneurysm in the Japanese population identifies three candidate susceptible loci and a functional genetic variant at EDNRA.	Intracranial aneurysm	1,383 Japanese ancestry cases, 5,484 Japanese ancestry controls	1,048 Japanese ancestry cases, 7,212 Japanese ancestry controls	4q31.22	EDNRA	rs6842241-C	0.694	1E-8		1.249	[1.161-1.343]	Illumina [565149]	N
1717	chr4	148401189	148401190	rs6841581	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	4q31.22	EDNRA	rs6841581-A	0.151907	3E-10		1.07	[1.05-1.09]	NR [8126035] (imputed)	N
1717	chr4	148401189	148401190	rs6841581	33199917	Bakker MK	2020-11-16	Nat Genet	Genome-wide association study of intracranial aneurysms identifies 17 risk loci and genetic overlap with clinical risk factors.	Intracranial aneurysm	7,495 European ancestry cases, 3,259 East Asian ancestry cases, 71,934 European ancestry controls, 234,948 East Asian ancestry controls	NA	4q31.22	NR	rs6841581-A	0.222	3E-26		0.218	[0.18-0.26] unit decrease	Affymetrix, Illumina [3527309] (imputed)	N
1717	chr4	148401189	148401190	rs6841581	31285632	Klarin D	2019-07-08	Nat Med	Genome-wide association study of peripheral artery disease in the Million Veteran Program.	Peripheral artery disease	24,009 European ancestry cases, 150,983 European ancestry controls, 5,373 African ancestry cases, 42,485 African ancestry controls, 1,925 Hispanic cases, 18,285 Hispanic controls	5,117 European ancestry cases, 389,291 European ancestry controls	4q31.22	EDNRA	rs6841581-?	NR	2E-9		1.07	[NR]	Affymetrix [at least 20323458] (imputed)	N
1717	chr4	148401189	148401190	rs6841581	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	4q31.22	EDNRA	rs6841581-A	0.1559	5E-24		0.0751	[0.061-0.09] unit increase	Affymetrix [at least 7947838] (imputed)	N
1717	chr4	148401189	148401190	rs6841581	28714975	Nelson CP	2017-07-17	Nat Genet	Association analyses based on false discovery rate implicate new loci for coronary artery disease.	Coronary artery disease (myocardial infarction, percutaneous transluminal coronary angioplasty, coronary artery bypass grafting, angina or chromic ischemic heart disease)	18,467 European and unknown ancestry cases, 45,264 European and unknown ancestry controls	57,347 European and unknown ancestry cases, 219,521 European and unknown ancestry controls	4q31.22	EDNRA	rs6841581-A	0.153	5E-10		1.07	[1.05-1.09]	Affymetrix [9149595] (imputed)	N
1717	chr4	148401189	148401190	rs6841581	24262325	Dichgans M	2013-11-21	Stroke	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Coronary artery disease or large artery stroke	2,167 Large artery stroke cases, 22,233 Coronary artery disease cases, ~ 75,921 controls	NA	4q31.22	EDNRA	rs6841581-?		2E-8				Affymetrix, Illumina [up to 2500000] (imputed)	N
1717	chr4	148407651	148407652	rs6841473	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Angina pectoris	14,007 East Asian ancestry cases, 145,158 East Asian ancestry controls	NA	4q31.22		rs6841473-T	0.310436525	3E-9		0.08481395	[0.057-0.113] unit increase	Illumina [13426705] (imputed)	N
1717	chr4	148407651	148407652	rs6841473	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	4q31.22	EDNRA	rs6841473-?	NR	1E-38		0.0815677	[0.069-0.094] unit increase	Illumina [4804024] (imputed)	N
1717	chr4	148407651	148407652	rs6841473	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 142,336 Japanese ancestry controls	NA	4q31.22	EDNRA	rs6841473-?	NR	1E-19		0.0954649	[0.075-0.116] unit increase	Illumina [19707525] (imputed)	N
1717	chr4	148414465	148414466	rs17023371	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	4q31.22	NR	rs17023371-?	NR	2E-6				Affymetrix [NR]	N
1717	chr4	148414650	148414651	rs17612742	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	4q31.22		rs17612742-C	0.31077034	2E-10		0.09217696	[0.064-0.12] unit increase	Illumina [13427135] (imputed)	N
1717	chr4	148414650	148414651	rs17612742	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (salicylic acid and derivatives)	61,583 European ancestry cases, 50,427 European ancestry controls, 41,461 East Asian ancestry cases, 137,265 East Asian ancestry controls	NA	4q31.22		rs17612742-C	NR	2E-9		0.0431	[0.029-0.057] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1717	chr4	148414650	148414651	rs17612742	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Peripheral artery disease	3,593 Japanese ancestry cases, 208,860 Japanese ancestry controls	NA	4q31.22		rs17612742-C	0.313372187	2E-8		1.1579436	[1.100609361-1.218264537]	Illumina [8919992] (imputed)	N
1717	chr4	148414650	148414651	rs17612742	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Ischemic stroke (large artery atherosclerosis)	4,373 European ancestry cases, 406,111 European ancestry controls, 1,626 East Asian ancestry cases, 28,195 East Asian ancestry controls, 355 South Asian ancestry cases, 6,707 South Asian ancestry controls, 259 African American cases, 15,146 African American controls, 34 Asian ancestry cases, 333 Asian ancestry controls, 41 Latin American cases, 692 Latin American controls	NA	4q31.22	EDNRA	rs17612742-?	NR	1E-11				NR [~ 8000000] (imputed)	N
1717	chr4	148414650	148414651	rs17612742	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Ischemic stroke (large artery atherosclerosis)	4,373 European ancestry cases, 406,111 European ancestry controls	NA	4q31.22	EDNRA	rs17612742-?	NR	1E-6				NR [~ 8000000] (imputed)	N
1717	chr4	148419039	148419040	rs13143677	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	4q31.22		rs13143677-?	NR	2E-13				NR [~ 8900000] (imputed)	N
1717	chr4	148427502	148427503	rs78049276	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Stable angina pectoris	18,833 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	4q31.23		rs78049276-C	0.267733743	6E-13		0.096584044	[0.07-0.123] unit increase	Illumina [13427711] (imputed)	N
1717	chr4	148427502	148427503	rs78049276	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Pulse pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	4q31.23	chr4mb148	rs78049276-C	0.133646953	1E-8		0.2668	[0.18-0.36] unit increase	Affymetrix [~ 9800000] (imputed)	N
1717	chr4	148434687	148434688	rs10305895	30621171	Coltell O	2019-01-04	Nutrients	Genome-Wide Association Study (GWAS) on Bilirubin Concentrations in Subjects with Metabolic Syndrome: Sex-Specific GWAS Analysis and Gene-Diet Interactions in a Mediterranean Population.	Serum bilirubin levels x Mediterranean diet adherence interaction in metabolic syndrome	257 European ancestry individuals with low adherence to Mediterranean diet, 161 European ancestry individuals with high adherence to Mediterranean diet	NA	4q31.23	EDNRA	rs10305895-G	0.341	6E-6				Illumina [622468]	N
1717	chr4	148437511	148437512	rs6822565	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	4q31.23	NR	rs6822565-?	NR	2E-49				Affymetrix [NR]	N
1717	chr4	148445814	148445815	rs33954106	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	4q31.23	EDNRA	rs33954106-A	0.2539	3E-9		0.02510091	[0.017-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
1717	chr4	148446773	148446774	rs6843446	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	4q31.23	EDNRA	rs6843446-G	0.254349	2E-24		0.026516272	[0.021-0.032] unit increase	Affymetrix [93095623] (imputed)	N
1717	chr4	148448446	148448447	rs11936340	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	4q31.23		rs11936340-T	NR	2E-15		0.0174	[0.013-0.022] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1717	chr4	148448446	148448447	rs11936340	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	4q31.23	EDNRA	rs11936340-T	0.254535	6E-19		0.023144035	[0.018-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1717	chr4	148448446	148448447	rs11936340	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q31.23	NR	rs11936340-T	0.264968	8E-20				Affymetrix, Illumina [24588908] (imputed)	N
1717	chr4	148448446	148448447	rs11936340	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	4q31.23	NR	rs11936340-T	0.254647	4E-20		0.019358	[0.015-0.023] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1717	chr4	148451175	148451176	rs10029799	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	4q31.23	EDNRA	rs10029799-C	0.254538	1E-13		0.019313524	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1717	chr4	148453169	148453170	rs35034877	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	4q31.23		rs35034877-C	NR	2E-8		0.0155	[0.01-0.021] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
1717	chr4	148454143	148454143	rs10692988	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	4q31.23	EDNRA	rs10692988-GTGT	0.246469	2E-9		0.015556421	[0.01-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1717	chr4	148457325	148457326	rs10305916	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	4q31.23	NR	rs10305916-G	0.19631	3E-13		0.016859	[0.012-0.021] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
1717	chr4	148457325	148457326	rs10305916	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q31.23	NR	rs10305916-G	0.178571	9E-10				Affymetrix, Illumina [24558453] (imputed)	N
1717	chr4	148457325	148457326	rs10305916	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	4q31.23	NR	rs10305916-G	0.196357	2E-11		0.015518	[0.011-0.02] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
1717	chr4	148457325	148457326	rs10305916	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	4q31.23		rs10305916-?	NR	6E-11				NR [~ 8900000] (imputed)	N
1717	chr4	148457458	148457459	rs10305919	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q31.23	NR	rs10305919-A	0.261778	1E-11				Affymetrix, Illumina [24653286] (imputed)	N
1717	chr4	148461036	148461037	rs5333	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q31.23	NR	rs5333-C	0.262028	5E-13				Affymetrix, Illumina [24332387] (imputed)	N
1717	chr4	148461036	148461037	rs5333	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	4q31.23	NR	rs5333-C	0.250584	8E-14		0.015938	[0.012-0.02] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1718	chr4	148510724	148510725	rs10519904	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Oscillospira)	541 Japanese ancestry women	NA	4q31.23	RP11-752L20.5	rs10519904-T	0.02	6E-6		0.0904	[0.052-0.129] unit increase	Illumina [545605]	N
1718	chr4	148513619	148513620	rs11099660	26154020	Ferrari R	2015-06-12	Neurobiol Aging	A genome-wide screening and SNPs-to-genes approach to identify novel genetic risk factors associated with frontotemporal dementia.	Frontotemporal dementia	530 European ancestry cases, 926 European ancestry controls	NA	4q31.23	TMEM184C	rs11099660-C	0.7	3E-6		1.57	[1.37-1.77]	Illumina [2292247] (imputed)	N
1718	chr4	148523782	148523782	rs11422390	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	4q31.23	RP11-425A23.1	rs11422390-T	0.2495	3E-6		0.038	[0.022-0.054] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1718	chr4	148612487	148612488	rs11731298	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	4q31.23	PRMT10	rs11731298-A	0.017	9E-6	(Estradiol )	0.03	[NR] pg/mL increase	Illumina [899892]	N
1719	chr4	148651126	148651127	rs905606	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	4q31.23	NR	rs905606-G	0.076	9E-6	(IFNalpha_STAT4_of_CD8p_T)			Illumina [5084123] (imputed)	N
1720	chr4	148861571	148861572	rs150641943	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Hyperopia	10,828 European ancestry hyperopia cases, 21,416 European ancestry emmetropia controls	NA	4q31.23	NR	rs150641943-?	NR	2E-6		0.654443	[0.38-0.93] unit increase	NR [13958389] (imputed)	N
1720	chr4	148884188	148884189	rs7658486	22610502	Kennedy RB	2012-05-19	Hum Genet	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IL-12p40)	Up to 512 European ancestry individuals, up to 199 African American individuals	NA	4q31.23	ARHGAP10	rs7658486-A		1E-8	(EA)			Illumina [NR]	N
1721	chr4	148929760	148929761	rs6838916	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	4q31.23	NR	rs6838916-A	NR	4E-9		0.0155	[0.01-0.021] unit increase	Affymetrix [9000000] (imputed)	N
1721	chr4	148937536	148937537	rs10213171	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	4q31.23	ARHGAP10	rs10213171-G	0.061	1E-11		1.1	[1.07-1.12]	Illumina [34740186] (imputed)	N
1721	chr4	148937536	148937537	rs10213171	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	4q31.23	ARHGAP10	rs10213171-G	0.08	6E-14		1.11	[1.08-1.14]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1721	chr4	148946689	148946690	rs10027347	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	4q31.23	ARHGAP10	rs10027347-T	0.06	7E-13	(EA)	1.12	[1.08-1.15]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1721	chr4	148974601	148974602	rs6845865	27798624	Eppinga RN	2016-10-31	Nat Genet	Identification of genomic loci associated with resting heart rate and shared genetic predictors with all-cause mortality.	Resting heart rate	127,919 European ancestry individuals, 2,478 Asian ancestry individuals, 1,734 Black individuals, 684 Mixed ancestry individuals, 1,436 individuals	130,795 European ancestry individuals	4q31.23	ARHGAP10, EDNRA	rs6845865-C	0.16	2E-14		0.3423	[0.25-0.43] unit decrease	Affymetrix [19941912] (imputed)	N
1721	chr4	148974601	148974602	rs6845865	20031603	Marroni F	2009-08-01	Circ Cardiovasc Genet	A genome-wide association scan of RR and QT interval duration in 3 European genetically isolated populations: the EUROSPAN project.	QT interval	2,325 European ancestry individuals	NA	4q31.23	ARHGAP10	rs6845865-G	0.21	7E-7		0.19	[0.11-0.27] unit increase	Illumina [~ 318327]	N
1721	chr4	148975634	148975635	rs6827412	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	4q31.23		rs6827412-A	NR	2E-11		0.0122	[0.0087-0.0157] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
1721	chr4	148975634	148975635	rs6827412	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q31.23	NR	rs6827412-A	0.652552	2E-16				Affymetrix, Illumina [24653286] (imputed)	N
1721	chr4	148975634	148975635	rs6827412	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	4q31.23	NR	rs6827412-A	0.608171	2E-17		0.016149	[0.012-0.02] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
1721	chr4	148975634	148975635	rs6827412	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q31.23	NR	rs6827412-A	0.651026	1E-15				Affymetrix, Illumina [24558453] (imputed)	N
1721	chr4	148975634	148975635	rs6827412	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	4q31.23	NR	rs6827412-A	0.608063	2E-16		0.0157	[0.012-0.019] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
1721	chr4	148976980	148976981	rs13103534	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	4q31.23	ARHGAP10	rs13103534-G	0.601154	8E-13		0.016224628	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1721	chr4	148976980	148976981	rs13103534	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	4q31.23	ARHGAP10	rs13103534-G	0.601118	5E-13		0.01635561	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1721	chr4	148976980	148976981	rs13103534	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	4q31.23	ARHGAP10	rs13103534-A		1E-11		0.015	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
1721	chr4	148976980	148976981	rs13103534	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	4q31.23		rs13103534-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1721	chr4	148979173	148979174	rs1021956	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	4q31.23	ARHGAP10	rs1021956-G	0.184164	2E-43		0.00417562	[0.0036-0.0048] unit decrease	Affymetrix [13995440] (imputed)	N
1721	chr4	148979699	148979700	rs10857228	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	4q31.23	NR	rs10857228-T	0.256721	3E-13		0.0096684	[0.0069-0.0124] unit increase	Affymetrix [16585854] (imputed)	N
1721	chr4	148979699	148979700	rs10857228	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	4q31.23	NR	rs10857228-T	0.256721	2E-8		0.00860024	[0.0054-0.0118] unit increase	Affymetrix [16585866] (imputed)	N
1721	chr4	148980173	148980174	rs7697204	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycoprotein acetyls levels	115,082 European ancestry individuals	NA	4q31.23		rs7697204-C	0.258837	6E-11		0.030636	[0.021-0.04] unit decrease	NR [11722792] (imputed)	N
1721	chr4	148981405	148981406	rs10027182	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	4q31.23	NR	rs10027182-G	0.255954	2E-8		0.0114942	[0.0075-0.0155] unit increase	NR [NR]	N
1721	chr4	148981495	148981496	rs10027275	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	4q31.23	NR	rs10027275-G	0.258619	6E-36		0.0114221	[0.0095-0.0133] unit increase	Affymetrix [16582909] (imputed)	N
1721	chr4	148981495	148981496	rs10027275	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	4q31.23	NR	rs10027275-G	0.258726	4E-26		0.0128226	[0.01-0.015] unit increase	Affymetrix [16582621] (imputed)	N
1721	chr4	148981495	148981496	rs10027275	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	4q31.23	NR	rs10027275-G	0.258619	1E-26		0.0107007	[0.0086-0.0128] unit increase	Affymetrix [16582965] (imputed)	N
1721	chr4	148981495	148981496	rs10027275	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	4q31.23	NR	rs10027275-G	0.258726	2E-21		0.0125534	[0.0098-0.0153] unit increase	Affymetrix [16582614] (imputed)	N
1721	chr4	148982915	148982916	rs11099674	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	4q31.23		rs11099674-A	NR	4E-11		0.0116	[0.0083-0.0149] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
1721	chr4	148985103	148985104	rs11099675	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	4q31.23	NR	rs11099675-T	0.247885	9E-10		0.021099	[0.014-0.028] unit increase	Affymetrix [16577313] (imputed)	N
1721	chr4	148985719	148985720	rs3775327	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	4q31.23	ARHGAP10	rs3775327-C	0.75	1E-28		11.1	z-score increase	Affymetrix [4311822] (imputed)	N
1721	chr4	148987060	148987061	rs12649972	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	4q31.23		rs12649972-T	NR	1E-31		0.0283	[0.024-0.033] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
1721	chr4	148987429	148987430	rs13138995	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	4q31.23	NR	rs13138995-A	0.3896	2E-8		1.035	[1.02-1.05]	Affymetrix, Illumina [NR] (imputed)	N
1721	chr4	148987429	148987430	rs13138995	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	4q31.23	NA	rs13138995-A	0.3976	2E-8	(Female)	1.044	[1.03-1.06]	Affymetrix, Illumina [NR] (imputed)	N
1721	chr4	148988158	148988159	rs2076947	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	4q31.23		rs2076947-C	NR	4E-9		0.0143	[0.0096-0.019] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
1721	chr4	149003297	149003298	rs6535577	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	4q31.23	NR	rs6535577-C	0.578347403419429	4E-8		0.0051195	[0.0033-0.0069] unit decrease	NR [NR]	N
1721	chr4	149006850	149006851	rs61296613	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	4q31.23		rs61296613-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1722	chr4	149035448	149035449	rs1879829	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Hippocampal volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	4q31.23	NR3C2	rs1879829-?		8E-6				Illumina [4322238] (imputed)	N
1722	chr4	149075754	149075755	rs143057152	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Diastolic blood pressure	422,713 European ancestry individuals	NA	4q31.23		rs143057152-?	NR	2E-9		0.113337	[0.075-0.151] unit increase	NR [9800000] (imputed)	N
1722	chr4	149075754	149075755	rs143057152	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	4q31.23		rs143057152-T	0.0026	4E-14		1.7783635	[1.32-2.23] mmHg increase	Affymetrix, Illumina [242865] (imputed)	N
1722	chr4	149075754	149075755	rs143057152	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Hypertension	810,865 European ancestry individuals	354,096 European ancestry individuals	4q31.23		rs143057152-T	0.0025	2E-12		7.02835	z score increase	Affymetrix, Illumina [239843] (imputed)	N
1722	chr4	149075754	149075755	rs143057152	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	4q31.23		rs143057152-T	0.0026	3E-12		0.9991503	[0.72-1.28] mmHg increase	Affymetrix, Illumina [242866] (imputed)	N
1722	chr4	149077898	149077899	rs28789690	29760442	Iglesias AI	2018-05-14	Nat Commun	Cross-ancestry genome-wide association analysis of corneal thickness strengthens link between complex and Mendelian eye diseases.	Central corneal thickness	17,803 European ancestry individuals, 8,107 Asian ancestry individuals	NA	4q31.23	NR3C2	rs28789690-A	0.09	8E-9		3.22	[2.14-4.3] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1722	chr4	149079496	149079497	rs3931397	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	4q31.23	NR3C2	rs3931397-T	NR	6E-7	(between families)	4.984	unit increase	Affymetrix [up to 15107142] (imputed)	N
1722	chr4	149079496	149079497	rs3931397	23291589	Lu Y	2013-01-06	Nat Genet	Genome-wide association analyses identify multiple loci associated with central corneal thickness and keratoconus.	Corneal structure	13,057 European ancestry individuals, 2,538 Indian ancestry individuals, 2,542 Malay ancestry individuals, 1,883 Chinese ancestry individuals	NA	4q31.23	NR3C2	rs3931397-T	0.07	4E-8		0.12	[0.061-0.179] unit decrease	Affymetrix, Illumina [~ 1000000] (imputed)	N
1722	chr4	149081807	149081808	rs17024437	32528159	Choquet H	2020-06-11	Commun Biol	A multiethnic genome-wide analysis of 44,039 individuals identifies 41 new loci associated with central corneal thickness.	Central corneal thickness	32,292 European ancestry individuals, 9,623 East Asian ancestry individuals, 1,367 Hispanic/Latino individuals, 757 African American  individuals	NA	4q31.23	NR3C2	rs17024437-?	NA	4E-18		3.73	[2.89-4.57] unit increase	Affymetrix [5541230] (imputed)	N
1722	chr4	149081991	149081992	rs17483687	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	4q31.23	NR	rs17483687-C	NR	6E-11		0.0312	[0.022-0.041] unit decrease	Affymetrix [9000000] (imputed)	N
1722	chr4	149084446	149084447	rs6816503	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs6816503-G	0.927309	2E-14		0.125596	[0.091-0.16] increase	Affymetrix [11014269] (imputed)	N
1722	chr4	149128594	149128595	rs7670121	30220432	Haas ME	2018-09-06	Am J Hum Genet	Genetic Association of Albuminuria with Cardiometabolic Disease and Blood Pressure.	Urinary albumin excretion (no hypertensive medication)	302,687 European ancestry individuals without hypertensive medication	NA	4q31.23	NR3C2	rs7670121-G	0.24	1E-8		0.01161	[0.0076-0.0156] unit increase	Affymetrix [11709857] (imputed)	N
1722	chr4	149132755	149132756	rs6535594	31630189	Casanova F	2019-10-20	Hum Mol Genet	A genome-wide association study implicates multiple mechanisms influencing raised urinary albumin-creatinine ratio.	Urinary albumin-to-creatinine ratio	437,027 European ancestry individuals	60,130 individuals	4q31.23	NR3C2	rs6535594-A	0.496	3E-12	(EA)	0.014	[0.01-0.018] unit increase	NR [12082474] (imputed)	N
1722	chr4	149132755	149132756	rs6535594	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals, 6,795 African American individuals, 6,324 East Asian ancestry individuals, 2,335 South Asian ancestry individuals, 1,442 Hispanic individuals	NA	4q31.23	NR3C2	rs6535594-A	NR	5E-14		0.0148	[0.011-0.019] unit increase	Affymetrix, Illumina [8034757] (imputed)	N
1722	chr4	149132755	149132756	rs6535594	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals	NA	4q31.23	NR3C2	rs6535594-A	0.4979	6E-13		0.0143694	[0.01-0.018] unit increase	Affymetrix, Illumina [8603712] (imputed)	N
1722	chr4	149132755	149132756	rs6535594	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Microalbuminuria	51,861 European, African American, East Asian, South Asian or Hispanic ancestry cases, 297,093 European, African American, East Asian, South Asian or Hispanic ancestry controls	NA	4q31.23	NR3C2	rs6535594-A	NR	1E-10		1.0440423	[1.03-1.06]	Affymetrix, Illumina [8326000] (imputed)	N
1722	chr4	149132755	149132756	rs6535594	30220432	Haas ME	2018-09-06	Am J Hum Genet	Genetic Association of Albuminuria with Cardiometabolic Disease and Blood Pressure.	Urinary albumin excretion	382,500 European ancestry individuals	NA	4q31.23	NR3C2	rs6535594-A	0.496	7E-12		0.01146	[0.0082-0.0147] unit increase	Affymetrix [11709857] (imputed)	N
1723	chr4	149190795	149190795	rs942015519	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q31.23	NR	rs942015519-C	0.02787	9E-9	(ANXA6)	0.3676	NR unit increase	Illumina [1671387] (imputed)	N
1723	chr4	149201413	149201414	rs10519952	32580138	Shi XY	2020-06-21	EBioMedicine	Identification of susceptibility variants to benign childhood epilepsy with centro-temporal spikes (BECTS) in Chinese Han population.	Benign childhood epilepsy with centro-temporal spikes	1,738 Han Chinese ancestry cases, 6,592 Han Chinese ancestry controls	NA	4q31.23	NR3C2, ARHGAP10, ASSP8	rs10519952-?		9E-6		1.27	[1.13-1.41]	Illumina [5352724] (imputed)	N
1723	chr4	149206435	149206436	rs12512126	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 8, orbital inclination due to vertical and horizontal position of exocanthion)	2,187 European ancestry individuals	NA	4q31.23	NR	rs12512126-G	0.2725	2E-6		0.1616	[0.096-0.227] unit decrease	Illumina [34985077] (imputed)	N
1723	chr4	149206521	149206522	rs4260521	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin I concentration	1,606 African American individuals	NA	4q31.23		rs4260521-?	NR	9E-6		0.16	[0.087-0.233] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1723	chr4	149214285	149214286	rs61760320	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	4q31.23	NR3C2	rs61760320-T	0.815981	7E-9	(178 ms)	0.0400744	[0.026-0.054] unit increase	Affymetrix [10000000] (imputed)	N
1723	chr4	149214285	149214286	rs61760320	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	4q31.23	NR3C2	rs61760320-T	0.815981	6E-9	(176 ms)	0.0402781	[0.026-0.054] unit increase	Affymetrix [10000000] (imputed)	N
1723	chr4	149214285	149214286	rs61760320	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	4q31.23	NR3C2	rs61760320-T	0.815981	4E-8	(196 ms)	0.0380237	[0.024-0.052] unit increase	Affymetrix [10000000] (imputed)	N
1723	chr4	149214285	149214286	rs61760320	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	4q31.23	NR3C2	rs61760320-T	0.815981	4E-8	(192 ms)	0.0369399	[0.023-0.051] unit increase	Affymetrix [10000000] (imputed)	N
1723	chr4	149214285	149214286	rs61760320	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	4q31.23	NR3C2	rs61760320-T	0.815981	4E-8	(172 ms)	0.0377999	[0.024-0.052] unit increase	Affymetrix [10000000] (imputed)	N
1723	chr4	149214285	149214286	rs61760320	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	4q31.23	NR3C2	rs61760320-T	0.815981	4E-8	(150 ms)	0.0367354	[0.023-0.051] unit increase	Affymetrix [10000000] (imputed)	N
1723	chr4	149214285	149214286	rs61760320	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	4q31.23	NR3C2	rs61760320-T	0.815981	3E-8	(194 ms)	0.0376888	[0.024-0.052] unit increase	Affymetrix [10000000] (imputed)	N
1723	chr4	149214285	149214286	rs61760320	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	4q31.23	NR3C2	rs61760320-T	0.815981	3E-8	(174 ms)	0.0386444	[0.025-0.053] unit increase	Affymetrix [10000000] (imputed)	N
1723	chr4	149214285	149214286	rs61760320	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	4q31.23	NR3C2	rs61760320-T	0.815981	3E-8	(160 ms)	0.0379344	[0.024-0.052] unit increase	Affymetrix [10000000] (imputed)	N
1723	chr4	149214285	149214286	rs61760320	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	4q31.23	NR3C2	rs61760320-T	0.815981	2E-8	(182 ms)	0.0379144	[0.024-0.052] unit increase	Affymetrix [10000000] (imputed)	N
1723	chr4	149214285	149214286	rs61760320	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	4q31.23	NR3C2	rs61760320-T	0.815981	2E-8	(158 ms)	0.0377555	[0.024-0.052] unit increase	Affymetrix [10000000] (imputed)	N
1723	chr4	149214285	149214286	rs61760320	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	4q31.23	NR3C2	rs61760320-T	0.815981	1E-8	(180 ms)	0.0391449	[0.025-0.053] unit increase	Affymetrix [10000000] (imputed)	N
1723	chr4	149273223	149273224	rs76911223	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		NR3C2	rs76911223-?	NR	4E-8		1.08938	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1724	chr4	149299070	149299071	rs17581884	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	4q31.23	NR3C2	rs17581884-G	0.139242	3E-9		0.019365663	[0.013-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1724	chr4	149300137	149300138	rs6831034	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	4q31.23	NR	rs6831034-A	0.808948	8E-11		0.015921	[0.011-0.021] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
1724	chr4	149311727	149311728	rs11725509	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Subcutaneous adipose tissue	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	4q31.23	NR3C2	rs11725509-A	0.97	1E-6	(women)			Affymetrix, Illumina [2500000] (imputed)	N
1724	chr4	149321345	149321346	rs1490453	19260141	Zemunik T	2009-02-01	Croat Med J	Genome-wide association study of biochemical traits in Korcula Island, Croatia.	Biochemical measures	898 Korculan (founder/genetic isolate) individuals	NA	4q31.23	NR3C2	rs1490453-A	0.17	3E-6	(fibrinogen)	0.25	[0.15-0.35] g/L increase	Illumina [316730]	N
1724	chr4	149326235	149326236	rs35464072	32472697	Verma SS	2020-05-30	Clin Pharmacol Ther	Genome-wide association study of platelet reactivity and cardiovascular response in patients treated with clopidogrel: a study by the International Clopidogrel Pharmacogenomics Consortium (ICPC).	Platelet reactivity in response to clopidogrel treatment	2,592 European ancestry individuals	NA	4q31.23	NR3C2	rs35464072-?	0.45	3E-7	(adjusted for CYP2C19*2)	0.14	NR unit increase	Illumina [5009928] (imputed)	N
1724	chr4	149332943	149332944	rs1546044	32472697	Verma SS	2020-05-30	Clin Pharmacol Ther	Genome-wide association study of platelet reactivity and cardiovascular response in patients treated with clopidogrel: a study by the International Clopidogrel Pharmacogenomics Consortium (ICPC).	Platelet reactivity in response to clopidogrel treatment	2,592 European ancestry individuals	NA	4q31.23	intergenic	rs1546044-T	0.72993	1E-6	(adjusted for CYP2C19*2)	0.149735	[0.09-0.209] unit decrease	Illumina [5009928] (imputed)	N
1724	chr4	149332943	149332944	rs1546044	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	4q31.23	NR	rs1546044-A	NR	5E-6		1.05	[NR]	Illumina [7158791] (imputed)	N
1724	chr4	149345586	149345587	rs13118022	32472697	Verma SS	2020-05-30	Clin Pharmacol Ther	Genome-wide association study of platelet reactivity and cardiovascular response in patients treated with clopidogrel: a study by the International Clopidogrel Pharmacogenomics Consortium (ICPC).	Platelet reactivity in response to clopidogrel treatment	2,592 European ancestry individuals	NA	4q31.23	intergenic	rs13118022-T	0.605871	1E-6	(adjusted for CYP2C19*2)	0.135527	[0.081-0.19] unit decrease	Illumina [5009928] (imputed)	N
1724	chr4	149352118	149352119	rs17582206	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	4q31.23		rs17582206-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1724	chr4	149360114	149360115	rs62332388	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	4q31.23	NR3C2	rs62332388-G	0.356491	4E-10		0.01443635	[0.0099-0.019] unit increase	Affymetrix [93095623] (imputed)	N
1724	chr4	149360114	149360115	rs62332388	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	4q31.23	NR3C2	rs62332388-G	0.356503	2E-11		0.015514497	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1724	chr4	149365384	149365384	rs3216799	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	4q31.23	NR3C2	rs3216799-TAG	0.37561	1E-11		0.015505726	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1724	chr4	149365384	149365384	rs3216799	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	4q31.23	NR	rs3216799-I	0.376187	2E-10		0.013438	[0.0093-0.0176] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1724	chr4	149375622	149375623	rs6535608	35157032	Ramachandran D	2022-02-14	Hum Mol Genet	Genome-wide association study and functional follow-up identifies 14q12 as a candidate risk locus for cervical cancer.	Cervical cancer	363 German ancestry cases, 861 German ancestry controls	NA	4q31.23	NR	rs6535608-C	0.4785	4E-6		15.371	[15.19-15.55]	Illumina [10000612] (imputed)	N
1724	chr4	149411314	149411315	rs6832433	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	4q31.23		rs6832433-C	0.48	4E-13		7.26	z score increase	Affymetrix [9061022] (imputed)	N
1724	chr4	149411314	149411315	rs6832433	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	4q31.23	NR	rs6832433-C	0.4643	2E-15				NR [9056863] (imputed)	N
1725	chr4	149450105	149450106	rs11099697	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	4q31.23	NR	rs11099697-?		2E-8				NR [7428630] (imputed)	N
1725	chr4	149460336	149460337	rs11937933	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	4q31.23		rs11937933-A	0.49	4E-39		13.09	z score increase	Affymetrix [9061022] (imputed)	N
1725	chr4	149460336	149460337	rs11937933	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	4q31.23		rs11937933-A	0.49	1E-15		7.98	z score increase	Affymetrix [9061022] (imputed)	N
1725	chr4	149460336	149460337	rs11937933	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	4q31.23	NR	rs11937933-A	0.4597	6E-17				NR [9056863] (imputed)	N
1725	chr4	149460336	149460337	rs11937933	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 3)	19,670 European ancestry individuals	NA	4q31.23		rs11937933-?	NR	1E-14				NR [9705931] (imputed)	N
1726	chr4	149556751	149556752	rs17024841	34074324	Wan JY	2021-06-01	Diabetol Metab Syndr	Genome-wide association analysis of metabolic syndrome quantitative traits in the GENNID multiethnic family study.	Fasting glucose	281 African American individuals from 73 families, 516 European ancestry individuals from 75 families, 125 Japanese American individuals from 15 families, 598 Mexican American individuals from 96 families	NA	4q31.23	5S_rRNA, BC031092	rs17024841-A	0.03	2E-8	(Hispanic/Latino)	0.7	[0.46-0.94] unit decrease	Illumina [up to 13042663] (imputed)	N
1726	chr4	149570679	149570680	rs2358462	20708005	Chalasani N	2010-08-10	Gastroenterology	Genome-wide association study identifies variants associated with histologic features of nonalcoholic Fatty liver disease.	Non-alcoholic fatty liver disease histology (other)	236 European ancestry cases	NA	4q31.23	intergenic	rs2358462-G	0.44	4E-6	(Steatosis)	0.6	[NR] unit increase	Illumina [324623]	N
1726	chr4	149574748	149574749	rs75764011	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	4q31.23	NR	rs75764011-?	NR	3E-7		0.2708	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1726	chr4	149594421	149594422	rs60354593	29730043	Li J	2018-05-02	Schizophr Res	Identifying the genetic risk factors for treatment response to lurasidone by genome-wide association study: A meta-analysis of samples from three independent clinical trials.	Response to lurasidone in schizophrenia	264 European ancestry cases, 158 African American ancestry cases	NA	4q31.23	ASSP8, LOC100130396	rs60354593-T	0.1435	5E-6		4.557	z score decrease	Affymetrix, Illumina [up to 1994688]	N
1726	chr4	149613442	149613443	rs11937496	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	4q31.23	NR	rs11937496-G	0.555929	3E-8		0.0070501	[0.0045-0.0096] unit increase	Affymetrix [16578495] (imputed)	N
1726	chr4	149631792	149631793	rs76342258	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Hypothyroidism	17,558 European ancestry cases, 117,083 European ancestry controls	NA	4q31.23	NR3C2	rs76342258-?	NR	8E-18		1.1494253	[1.11-1.19]	Illumina [13676411] (imputed)	N
1726	chr4	149632374	149632374	rs377413889	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hashimoto thyroiditis	15,654 European ancestry cases, 379,986 European ancestry controls, 537 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	4q31.23		rs377413889-AGG	NR	3E-8		0.1575	[0.1-0.21] unit decrease	Affymetrix, Illumina [25797652] (imputed)	N
1726	chr4	149633420	149633421	rs7655751	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	4q31.23	RP11-503L19.1	rs7655751-T	0.211042	2E-32		0.13197444	[0.11-0.15] unit decrease	Affymetrix [7288503] (imputed)	N
1726	chr4	149633467	149633468	rs7655915	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Autoimmune traits	approximately 459,000 European ancestry individuals	NA	4q31.23		rs7655915-?	NR	4E-15				NR [~ 8900000] (imputed)	N
1726	chr4	149634037	149634038	rs6535628	32581359	Saevarsdottir S	2020-06-24	Nature	FLT3 stop mutation increases FLT3 ligand level and risk of autoimmune thyroid disease.	Autoimmune thyroid disease	30,234 European ancestry cases, 724,172 European ancestry controls	NA	4q31.23	NR	rs6535628-A	0.782	6E-30		1.1363636	[NR]	Affymetrix, Illumina [42900000] (imputed)	N
1726	chr4	149635024	149635025	rs10519980	22493691	Eriksson N	2012-04-06	PLoS One	Novel associations for hypothyroidism include known autoimmune risk loci.	Hypothyroidism	3,736 European ancestry cases, 35,546 European ancestry controls	NA	4q31.23	ATP5LP4, LOC285423	rs10519980-C	0.81	7E-6		1.16	[1.09-1.23]	Illumina [870065]	N
1726	chr4	149636387	149636388	rs4835534	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hypothyroidism	30,155 European ancestry cases, 379,986 European ancestry controls, 1,114 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	4q31.23		rs4835534-C	NR	7E-27		0.1421	[0.12-0.17] unit decrease	Affymetrix, Illumina [25801083] (imputed)	N
1726	chr4	149639864	149639865	rs28367132	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	4q31.23	NR	rs28367132-A	0.20326599999999995	5E-11		0.00664445	[0.0046-0.0087] unit increase	Affymetrix [16582909] (imputed)	N
1726	chr4	149639864	149639865	rs28367132	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	4q31.23	NR	rs28367132-A	0.20326599999999995	4E-8		0.00624549	[0.004-0.0085] unit increase	Affymetrix [16582965] (imputed)	N
1726	chr4	149646537	149646538	rs28435578	25743335	Taylor PN	2015-03-06	Nat Commun	Whole-genome sequence-based analysis of thyroid function.	Thyroid stimulating hormone levels	2,287 European ancestry whole-genome sequenced individuals, 14,048 European ancestry individuals	NA	4q31.23	NR3C2	rs28435578-C	0.227	5E-32		0.166	[0.14-0.19] unit decrease	Illumina [at least 9558836] (imputed)	N
1726	chr4	149652609	149652610	rs10028213	22494929	Rawal R	2012-04-16	Hum Mol Genet	Meta-analysis of two genome-wide association studies identifies four genetic loci associated with thyroid function.	Thyroid function	3,736 European ancestry individuals	3,727 European ancestry individuals	4q31.23	NR3C2	rs10028213-C	0.823	3E-10		0.084	[0.059-0.109] unit increase	Affymetrix, Illumina [2524918] (imputed)	N
1726	chr4	149657641	149657642	rs10021637	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	4q31.23		rs10021637-G	NR	1E-31		0.1302	[0.11-0.15] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1726	chr4	149664321	149664322	rs6813888	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	4q31.23	NR	rs6813888-G	0.175	7E-6	(IFNalpha_STAT4_of_CD56brightCD16n)			Illumina [5084123] (imputed)	N
1726	chr4	149665601	149665602	rs11732089	32769997	Zhou W	2020-08-07	Nat Commun	GWAS of thyroid stimulating hormone highlights pleiotropic effects and inverse association with thyroid cancer.	Thyroid stimulating hormone levels	119,715 European ancestry individuals	NA	4q31.23	NR3C2, LOC105377480	rs11732089-C	0.195815970937706	7E-93		0.1176	[0.11-0.13] SD decrease	Illumina [22400000] (imputed)	N
1726	chr4	149665826	149665827	rs17025117	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	4q31.23		rs17025117-?	NR	9E-32				NR [~ 8900000] (imputed)	N
1726	chr4	149669505	149669506	rs10032216	28333968	Nielsen TR	2017-03-23	PLoS One	A genome-wide association study of thyroid stimulating hormone and free thyroxine in Danish children and adolescents.	Plasma thyroid-stimulating hormone levels	1,680 Danish ancestry children and adolescents	2,129 Danish ancestry children and adolescents	4q31.23	NR3C2	rs10032216-?	NR	6E-8		0.238	[0.1517- 0.3234] unit increase	Illumina [8508717] (imputed)	N
1726	chr4	149669505	149669506	rs10032216	23408906	Porcu E	2013-02-07	PLoS Genet	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 14,459 European ancestry females, up to 10,936 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males	NA	4q31.23	NR3C2	rs10032216-T	0.781	9E-16	(TSH)	0.087	[0.065-0.109] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1726	chr4	149669505	149669506	rs10032216	23408906	Porcu E	2013-02-07	PLoS Genet	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 14,459 European ancestry females, up to 10,936 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males	NA	4q31.23	NR3C2	rs10032216-T	0.781	2E-13	(TSH - Females)	0.106	[0.079-0.133] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1727	chr4	149701822	149701823	rs34216340	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	4q31.23		rs34216340-?	NR	6E-12				NR [~ 8900000] (imputed)	N
1727	chr4	149718724	149718725	rs73856289	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 20)	2,187 European ancestry individuals	NA	4q31.23	NR	rs73856289-C	0.1784	4E-6		0.1779	[0.1-0.25] unit decrease	Illumina [10677593] (imputed)	N
1727	chr4	149722924	149722925	rs9968300	28333968	Nielsen TR	2017-03-23	PLoS One	A genome-wide association study of thyroid stimulating hormone and free thyroxine in Danish children and adolescents.	Plasma thyroid-stimulating hormone levels	1,680 Danish ancestry children and adolescents	2,129 Danish ancestry children and adolescents	4q31.23	NR3C2	rs9968300-C	0.795	2E-11		0.194	[0.14-0.25] unit increase	Illumina [8508717] (imputed)	N
1727	chr4	149805676	149805677	rs72719803	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	4q31.23		rs72719803-?	NR	5E-14				NR [~ 8900000] (imputed)	N
1728	chr4	149856840	149856841	rs4407483	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	4q31.23	NR3C2	rs4407483-C	0.1314	3E-12		1.083	NR	Affymetrix [9154080] (imputed)	N
1728	chr4	149916676	149916677	rs186544372	30079052	Rujescu D	2018-07-20	Front Neurol	Genome-Wide Association Study in Vestibular Neuritis: Involvement of the Host Factor for HSV-1 Replication.	Vestibular neuritis	131 European ancestry cases, 2,609 German ancestry controls	NA	4q31.23	NR3C2	rs186544372-A	0.015	2E-9		6.356	[3.488-11.583]	Affymetrix, Illumina [7813927] (imputed)	N
1729	chr4	149952675	149952676	rs4455396	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	4q31.23		rs4455396-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1729	chr4	149974077	149974078	rs11940147	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	4q31.23	NA	rs11940147-?		7E-12				Affymetrix, Illumina [NR] (imputed)	N
1729	chr4	149989411	149989412	rs11730050	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Rostral middle frontal gyrus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	4q31.23	NR	rs11730050-?		2E-6				Illumina [4322238] (imputed)	N
1730	chr4	150085542	150085543	rs6825179	30894546	Ivarsdottir EV	2019-03-20	Nat Commun	Sequence variation at ANAPC1 accounts for 24% of the variability in corneal endothelial cell density.	Corneal endothelial cell shape (percentage of hexagonally shaped cells)	6,125 Icelandic ancestry individuals	NA	4q31.23	NR	rs6825179-C		4E-7		0.118	[NR] unit increase	Illumina [NR]	N
1730	chr4	150207075	150207076	rs72951801	32438682	Mateos MK	2020-05-19	Cancers (Basel)	Genome-Wide Association Meta-Analysis of Single-Nucleotide Polymorphisms and Symptomatic Venous Thromboembolism during Therapy for Acute Lymphoblastic Leukemia and Lymphoma in Caucasian Children.	Childhood ALL/LBL (acute lymphoblastic leukemia/lymphoblastic lymphoma) treatment-related venous thromboembolism	92 European ancestry cases, 1,481 European ancestry controls	NA	4q31.23	NR	rs72951801-?		1E-6		33.333336	[8.33-100]	Illumina [NR] (imputed)	N
1732	chr4	150347349	150347350	rs1011115786	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	72,866 East Asian ancestry individuals	NA	4q31.23		rs1011115786-G	0.001409	5E-8		0.399577	[0.26-0.54] unit decrease	Illumina [13461863] (imputed)	N
1732	chr4	150347349	150347350	rs1011115786	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	4q31.23		rs1011115786-G	NR	5E-8		0.3996	[0.26-0.54] unit decrease	Affymetrix, Illumina [20521447] (imputed)	N
1732	chr4	150419364	150419365	rs115988318	30787463	Escala-Garcia M	2019-02-21	Br J Cancer	Genome-wide association study of germline variants and breast cancer-specific mortality.	Breast cancer specific mortality in breast cancer	7,697 European ancestry cases, 88,964 European ancestry controls	NA	4q31.23	NR	rs115988318-?	NR	4E-6		0.6740945	[0.57-0.80]	Affymetrix, Illumina [~ 10400000] (imputed)	N
1734	chr4	150672513	150672514	rs17026425	25866641	Xu W	2015-03-19	Biomark Res	A genome wide association study on Newfoundland colorectal cancer patients' survival outcomes.	Survival in rectal cancer	171 European ancestry cases	NA	4q31.23	intergenic	rs17026425-?		7E-7	(overall survival)	5.06	[2.67-9.60]	Illumina [729737]	N
1734	chr4	150704228	150704229	rs142324847	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	4q31.23	Intergenic	rs142324847-T	NR	6E-6		0.0997747	[0.057-0.143] unit increase	Illumina [13520550] (imputed)	N
1734	chr4	150725211	150725212	rs10030601	22949513	EPICURE Consortium	2012-09-04	Hum Mol Genet	Genome-wide association analysis of genetic generalized epilepsies implicates susceptibility loci at 1q43, 2p16.1, 2q22.3 and 17q21.32.	Generalized epilepsy	702 European ancestry genetic absence epilepsies cases, 586 European ancestry juvenile myoclonic epilepsy cases, 239 European ancestry other genetic generalized epilepsies cases, 2,461 European ancestry controls	347 European ancestry genetic absence epilepsies trios, 166 European ancestry juvenile myoclonic epilepsy trios, 91 European ancestry other genetic generalized epilepsies trios, 385 European ancestry genetic absence epilepsies cases, 382 European ancestry juvenile myoclonic epilepsy cases, 122 European ancestry other genetic generalized epilepsies cases, up to 889 European ancestry controls	4q31.23	intergenic	rs10030601-C	0.035	1E-6	(GAE)	1.58	[1.29-1.93]	Affymetrix [4560000] (imputed)	N
1735	chr4	150822109	150822110	rs56676520	29520036	Stein MB	2018-03-08	Mol Psychiatry	Genome-wide analysis of insomnia disorder.	Insomnia	2,297 European American cases, 334 African American cases, 606 Latino American cases, 9,176 European American controls, 2,345 African American controls, 2,893 Latino American controls	NA	4q31.23	EST CN411885	rs56676520-A	NR	9E-7	(EA)	1.5		Illumina [at least 360704] (imputed)	N
1735	chr4	150833757	150833758	rs6833433	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	4q31.23	Intergenic	rs6833433-A	0.3487	4E-8	(MTAG)	0.0103	[0.0066-0.014] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1735	chr4	150836841	150836842	rs4600898	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	4q31.23	Intergenic	rs4600898-A	0.3476	2E-8		0.0115	[0.0076-0.0154] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1736	chr4	150901756	150901757	rs11930273	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue adjusted for BMI	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	4q31.23	DCLK2	rs11930273-G	0.91	1E-6	(overall)			Affymetrix, Illumina [2500000] (imputed)	N
1736	chr4	150924108	150924109	rs6535703	31589552	Lind L	2019-10-07	Metab Syndr Relat Disord	Genome-Wide Association Study of the Metabolic Syndrome in UK Biobank.	Metabolic syndrome	291,107 European ancestry individuals	NA	4q31.23	LINC01122	rs6545703-G	0.415927	9E-9		0.0382425	[0.025-0.051] unit decrease	Affymetrix [9463307] (imputed)	N
1736	chr4	150930751	150930752	rs4260523	31081985	Stein MB	2019-05-13	Am J Med Genet B Neuropsychiatr Genet	Genome-wide analyses of psychological resilience in U.S. Army soldiers.	Psychological resilience (self-assessed)	11,473 European ancestry individuals	NA	4q31.23	DCLK2	rs4260523-A	0.2917	6E-9		0.352	unit increase	Illumina [at least 360704] (imputed)	N
1736	chr4	150983420	150983421	rs62339861	30940813	Kranzler HR	2019-04-02	Nat Commun	Genome-wide association study of alcohol consumption and use disorder in 274,424 individuals from multiple populations.	Alcohol use disorder (consumption score)	200,680 European American individuals, 56,495 African American individuals, 14,112 Latino American individuals, 1,366 East Asian American individuals, 189 South Asian American individuals	NA	4q31.23	DCLK2	rs62339861-C	0.792	3E-8	(EA)	0.03685	[0.024-0.05] unit increase	Affymetrix [up to 12500000] (imputed)	N
1736	chr4	150984856	150984857	rs4423856	30940813	Kranzler HR	2019-04-02	Nat Commun	Genome-wide association study of alcohol consumption and use disorder in 274,424 individuals from multiple populations.	Alcohol use disorder (consumption score)	200,680 European American individuals, 56,495 African American individuals, 14,112 Latino American individuals, 1,366 East Asian American individuals, 189 South Asian American individuals	NA	4q31.23	DCLK2	rs4423856-T	0.796	1E-8		5.66	NR z score increase	Affymetrix [up to 12500000] (imputed)	N
1737	chr4	151000829	151000830	rs60160057	32109421	Li C	2020-02-20	Am J Hum Genet	Genome-Wide Association Analysis in Humans Links Nucleotide Metabolism to Leukocyte Telomere Length.	Leukocyte telomere length	78,592 European ancestry individuals	NA	4q31.23	DCLK2	rs60160057-A	0.211476	3E-6		0.028728	[0.017-0.041] unit decrease	Affymetrix, Illumina, Perlegen [up to 30071938] (imputed)	N
1737	chr4	151022646	151022647	rs150175932	27622933	Li QS	2016-09-13	Transl Psychiatry	Analysis of 23andMe antidepressant efficacy survey data: implication of circadian rhythm and neuroplasticity in bupropion response.	Response to selective serotonin reuptake inhibitors and depression	6,348 European ancestry responder cases, 191,357 European ancestry healthy controls	NA	4q31.23	DCLK2	rs150175932-?		1E-7		15.22	[3.318-69.804]	Illumina [~ 12000000] (imputed)	N
1737	chr4	151030069	151030070	rs9985766	26708285	Wakil SM	2016-02-01	Atherosclerosis	A genome-wide association study reveals susceptibility loci for myocardial infarction/coronary artery disease in Saudi Arabs.	Myocardial infarction	2,563 Saudi Arab ancestry cases, 1,868 Saudi Arab ancestry controls	866 Saudi Arab ancestry cases, 371 Saudi Arab ancestry controls	4q31.23	DCLK2	rs9985766-G	0.16	6E-6		1.23	[NR]	Affymetrix [537798]	N
1737	chr4	151030069	151030070	rs9985766	26708285	Wakil SM	2016-02-01	Atherosclerosis	A genome-wide association study reveals susceptibility loci for myocardial infarction/coronary artery disease in Saudi Arabs.	Coronary artery disease	2,165 Saudi Arab ancestry cases, 2,266 Saudi Arab ancestry controls	503 Saudi Arab ancestry cases, 734 Saudi Arab ancestry controls	4q31.23	DCLK2	rs9985766-G	0.16	8E-10		1.35	[NR]	Affymetrix [537798]	N
1737	chr4	151057230	151057231	rs190788988	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	4q31.23	DCLK2	rs190788988-T	NR	8E-6		1.09629	[0.62-1.58] unit increase	Illumina [at least 950000] (imputed)	N
1737	chr4	151063848	151063849	rs10857243	30319691	Liu C	2018-09-24	Front Genet	Genome-Wide Association and Mechanistic Studies Indicate That Immune Response Contributes to Alzheimer's Disease Development.	Cognitive impairment test score	235 early mild cognitive impairment cases, 249 late mild cognitive impairment cases, 47 Alzheimer's disease cases, 281 controls.	NA	4q31.23	Intergenic	rs10857243-?		1E-6		1.867575	[NR] unit decrease	Illumina [575353]	N
1737	chr4	151064367	151064368	rs11099757	29855537	Hirata T	2018-05-31	Sci Rep	Japanese GWAS identifies variants for bust-size, dysmenorrhea, and menstrual fever that are eQTLs for relevant protein-coding or long non-coding RNAs.	Menstruation quality of life impact (pressure in breast)	642 Japanese ancestry female cases, 5,092 Japanese ancestry female controls	667 Japanese ancestry female cases, 4,947 Japanese ancestry female controls	4q31.23	NR	rs11099757-T	0.298158338	7E-6		0.19953223	[0.11-0.29] unit increase	Affymetrix [536506]	N
1737	chr4	151090030	151090031	rs28549386	32109663	Feitosa MF	2020-02-14	Atherosclerosis	Gene discovery for high-density lipoprotein cholesterol level change over time in prospective family studies.	HDL cholesterol levels	3,567 European ancestry men, 4,171 European ancestry women	NA	4q31.23	DCLK2	rs28549386-C	0.3	5E-7	(women)	0.12	[0.081-0.159] unit decrease	Affymetrix, Illumina [6523511] (imputed)	N
1737	chr4	151101671	151101672	rs11947645	24133439	Jones RM	2013-10-11	Front Hum Neurosci	Genome-wide association study of autistic-like traits in a general population study of young adults.	Social autistic-like traits	965 European ancestry young adult individuals	NA	4q31.23	DCLK2	rs11947645-A		1E-6		5.329	[3.17-7.48] unit increase	Illumina [2462046] (imputed)	N
1738	chr4	151186063	151186071	rs113745272	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	4q31.3		rs113745272-C	NR	2E-16		0.0177	[0.014-0.022] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
1738	chr4	151199079	151199080	rs2290846	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	4q31.3		rs2290846-A	0.27	3E-11		6.66	z score increase	Affymetrix [9061022] (imputed)	N
1738	chr4	151199079	151199080	rs2290846	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	4q31.3		rs2290846-A	NR	4E-10		0.0134	[0.0093-0.0175] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
1738	chr4	151199079	151199080	rs2290846	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	4q31.3		rs2290846-A	NR	3E-12		0.0162	[0.012-0.021] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
1738	chr4	151199079	151199080	rs2290846	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cholelithiasis	9,305 East Asian ancestry cases, 168,253 East Asian ancestry controls	NA	4q31.3		rs2290846-A	0.295958293	2E-8		0.09571408	[0.062-0.129] unit increase	Illumina [13429768] (imputed)	N
1738	chr4	151199079	151199080	rs2290846	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cholelithiasis	26,122 European ancestry cases, 461,431 European ancestry controls, 9,305 East Asian ancestry cases, 168,253 East Asian ancestry controls	NA	4q31.3		rs2290846-A	NR	1E-36		0.116	[0.098-0.134] unit increase	Affymetrix, Illumina [25844936] (imputed)	N
1738	chr4	151199079	151199080	rs2290846	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cholecystitis	9,820 European ancestry cases, 461,431 European ancestry controls, 1,860 East Asian ancestry cases, 168,253 East Asian ancestry controls	NA	4q31.3		rs2290846-A	NR	2E-12		0.1059	[0.076-0.135] unit increase	Affymetrix, Illumina [25842273] (imputed)	N
1738	chr4	151199079	151199080	rs2290846	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	4q31.3		rs2290846-A	NR	5E-10		0.013	[0.0089-0.0171] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
1738	chr4	151199079	151199080	rs2290846	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	4q31.3	LRBA	rs2290846-G	0.713074	2E-26		0.00264842	[0.0021-0.0032] unit increase	Affymetrix [13995440] (imputed)	N
1738	chr4	151199079	151199080	rs2290846	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	4q31.3	LRBA	rs2290846-G	0.71	3E-18		8.7	z-score increase	Affymetrix [4311822] (imputed)	N
1738	chr4	151199079	151199080	rs2290846	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	4q31.3	LRBA	rs2290846-A	0.287346	1E-13		0.018120443	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1738	chr4	151199079	151199080	rs2290846	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	4q31.3	LRBA	rs2290846-A	0.287321	1E-13		0.018143129	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1738	chr4	151199079	151199080	rs2290846	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q31.3	NR	rs2290846-A	0.27664	2E-18				Affymetrix, Illumina [23114412] (imputed)	N
1738	chr4	151199079	151199080	rs2290846	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	4q31.3	NR	rs2290846-A	0.284312	1E-18		0.018804	[0.015-0.023] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
1738	chr4	151199079	151199080	rs2290846	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	4q31.3		rs2290846-?	NR	3E-10				NR [~ 8900000] (imputed)	N
1738	chr4	151199079	151199080	rs2290846	30504769	Ferkingstad E	2018-11-30	Nat Commun	Genome-wide association meta-analysis yields 20 loci associated with gallstone disease.	Gallstone disease	27,174 European ancestry cases, 736,838 European ancestry controls	NA	4q31.3	LRBA	rs2290846-?		5E-27		1.12	[1.09-1.14]	Affymetrix, Illumina [43000000] (imputed)	N
1738	chr4	151210676	151210677	rs17588356	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	4q31.3		rs17588356-?	NR	4E-11				NR [~ 8900000] (imputed)	N
1738	chr4	151222265	151222266	rs1960918	26105758	Adhikari K	2015-06-24	Nat Commun	A genome-wide association study identifies multiple loci for variation in human ear morphology.	Helix rolling	4,919 Latin American individuals	NA	4q31.3	LRBA	rs1960918-A	0.43	2E-8		0.066	unit decrease	Illumina [671038]	N
1738	chr4	151222265	151222266	rs1960918	26105758	Adhikari K	2015-06-24	Nat Commun	A genome-wide association study identifies multiple loci for variation in human ear morphology.	Ear morphology	4,919 Latin American individuals	NA	4q31.3	LRBA	rs1960918-A	0.43	4E-8				Illumina [671038]	N
1739	chr4	151259763	151259764	rs12711271	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	4q31.3	NR	rs12711271-?	NR	1E-25				Illumina [at least 7383741] (imputed)	N
1739	chr4	151271451	151271452	rs13145548	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	4q31.3		rs13145548-A	0.366674	3E-8		0.0232502	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
1739	chr4	151284981	151284982	rs7657948	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	4q31.3	LRBA	rs7657948-A	0.927118121009979	5E-6	(G_Fusicatenibacter_RNT)	0.192797	[0.11-0.28] unit increase	Illumina [7711310] (imputed)	N
1739	chr4	151295084	151295085	rs6823767	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	4q31.3		rs6823767-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1739	chr4	151295084	151295085	rs6823767	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	NA	4q31.3	LRBA	rs6823767-T	0.7226	4E-10		0.2129	[0.15-0.28] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1739	chr4	151303317	151303318	rs6817572	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	4q31.3		rs6817572-G	0.360339	3E-8		0.0225413	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
1739	chr4	151303317	151303318	rs6817572	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	4q31.3		rs6817572-G	0.360339	5E-8		0.0220973	[0.014-0.03] unit decrease	NR [11722792] (imputed)	N
1739	chr4	151361744	151361745	rs12511109	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	4q31.3		rs12511109-C	NR	2E-8		0.0197	[0.013-0.027] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
1739	chr4	151373639	151373640	rs62344660	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	4q31.3	NR	rs62344660-?	NR	2E-10				Illumina [at least 7383741] (imputed)	N
1740	chr4	151477880	151477881	rs7674861	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	4q31.3	NR	rs7674861-?	NR	3E-8				Illumina [at least 7383741] (imputed)	N
1741	chr4	151557310	151557312	rs70941419	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	4q31.3	NR	rs70941419-C	NR	4E-9		0.0318	[0.021-0.042] unit increase	Affymetrix [9000000] (imputed)	N
1741	chr4	151588825	151588826	rs11944485	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	4q31.3	NR	rs11944485-?	NR	8E-8				Illumina [at least 7383741] (imputed)	N
1742	chr4	151651830	151651831	rs112842947	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	4q31.3		rs112842947-G	NR	6E-9		0.0211	[0.014-0.028] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
1742	chr4	151651830	151651831	rs112842947	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	4q31.3	NR	rs112842947-G	NR	2E-9		0.0229	[0.015-0.03] unit decrease	Affymetrix [9000000] (imputed)	N
1742	chr4	151662113	151662114	rs13147122	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	4q31.3	NR	rs13147122-?	NR	3E-6	(AA)	25.73	[23.4-28.06]	Illumina [905956]	N
1742	chr4	151680326	151680327	rs28521457	28043905	Nicoletti P	2016-12-30	Gastroenterology	Association of Liver Injury From Specific Drugs, or Groups of Drugs, With Polymorphisms in HLA and Other Genes in a Genome-Wide Association Study.	Drug-induced hepatocellular liver injury	474 European ancestry cases, 10,588 European ancestry controls	NA	4q31.3	LRBA	rs28521457-?	0.040	5E-9		2.1	1.6-2.7	Illumina [505740] (imputed)	N
1742	chr4	151761598	151761599	rs6846361	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	4q31.3	NR	rs6846361-?	NR	1E-6				Illumina [at least 7383741] (imputed)	N
1743	chr4	151794206	151794207	rs17027158	29594489	Apewokin S	2018-03-28	Support Care Cancer	Host genetic susceptibility to Clostridium difficile infections in patients undergoing autologous stem cell transplantation: a genome-wide association study.	Clostridium difficile infection in multiple myeloma	57 European ancestry cases, 589 European ancestry controls	NA	4q31.3	NR	rs17027158-?		4E-6				Illumina [892589]	N
1744	chr4	151979111	151979112	rs112580639	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota relative abundance (bacterial taxa)	up to 858 Metropolitan French ancestry individuals	NA	4q31.3	NR	rs112580639-?	NR	4E-8	(Clostridium_propionicum)	0.290386	[0.19-0.39] unit increase	Illumina [5293637] (imputed)	N
1744	chr4	151984150	151984151	rs6816467	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	4q31.3	NR	rs6816467-T	0.958271	1E-8		0.0308375	[0.02-0.041] unit decrease	NR [NR]	N
1744	chr4	152030339	152030340	rs147762399	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	4q31.3	NR	rs147762399-T	NR	4E-9		1.084	[1.06-1.11]	Affymetrix, Illumina [29235255] (imputed)	N
1746	chr4	152185579	152185579	rs71596245	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 15, philtrum width)	2,187 European ancestry individuals	NA	4q31.3	NR	rs71596245-CA	0.4701	4E-6		0.1403	[0.081-0.2] unit decrease	Illumina [10677593] (imputed)	N
1746	chr4	152214672	152214673	rs78968521	32841424	Herrera-Luis E	2020-08-25	Pediatr Allergy Immunol	Genome-wide association study reveals a novel locus for asthma with severe exacerbations in diverse populations.	Asthma with severe exacerbations	1,283 Latino cases, 2,027 Latino controls	448 African American cases, 595 African American controls	4q31.3	NR	rs78968521-G	0.023	1E-6	(Latino)	2.38	[1.68-3.38]	Affymetrix [9737707] (imputed)	N
1746	chr4	152229766	152229767	rs11935905	30621171	Coltell O	2019-01-04	Nutrients	Genome-Wide Association Study (GWAS) on Bilirubin Concentrations in Subjects with Metabolic Syndrome: Sex-Specific GWAS Analysis and Gene-Diet Interactions in a Mediterranean Population.	Serum bilirubin levels x Mediterranean diet adherence interaction in metabolic syndrome	257 European ancestry individuals with low adherence to Mediterranean diet, 161 European ancestry individuals with high adherence to Mediterranean diet	NA	4q31.3	intergenic	rs11935905-C	0.295	2E-6	(men)			Illumina [622468]	N
1746	chr4	152238251	152238252	rs79468174	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (hospitalized covid vs population)	613 European ancestry cases, 680,416 European ancestry controls, 140 Hispanic or Latin American cases, 94,327 Hispanic or Latin American controls, 49 Black or African American cases, 22,410 Black or African American controls	NA	4q31.3		rs79468174-?	NR	5E-6		0.855425	[0.49-1.22] unit increase	Illumina [9875426] (imputed)	N
1746	chr4	152244317	152244318	rs7655373	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	4q31.3		rs7655373-G	NR	1E-10		0.0126	[0.0087-0.0165] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
1746	chr4	152263402	152263402	rs113613982	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	4q31.3	RP11-731D1.4	rs113613982-CA	0.537787	1E-10		0.014296853	[0.0099-0.0187] unit increase	Affymetrix [93095623] (imputed)	N
1746	chr4	152287921	152287922	rs11735310	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	4q31.3	NR	rs11735310-T	NR	3E-9		5.939	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1746	chr4	152291431	152291432	rs4696256	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	4q31.3	NR	rs4696256-A	0.524772	5E-22		0.017872	[0.014-0.021] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
1746	chr4	152291688	152291689	rs4696257	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	4q31.3	NR	rs4696257-A	0.450298	1E-8		0.035826445	[0.023-0.048] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1746	chr4	152295197	152295198	rs3990738	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	4q31.3	NR	rs3990738-?	NR	3E-7		5.156	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1746	chr4	152301184	152301185	rs4519779	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q31.3	NR	rs4519779-A	0.489981	4E-24				Affymetrix, Illumina [24649327] (imputed)	N
1747	chr4	152325384	152325385	rs62327196	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	4q31.3		rs62327196-G	NR	5E-24		0.0197	[0.016-0.023] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1747	chr4	152342189	152342190	rs2709821	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	4q31.3		rs2709821-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1747	chr4	152349961	152349962	rs2724564	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	4q31.3		rs2724564-G	0.44	3E-16				Affymetrix [10369434] (imputed)	N
1747	chr4	152349961	152349962	rs2724564	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q31.3	NR	rs2724564-T	0.508454	6E-47				Affymetrix, Illumina [24588908] (imputed)	N
1747	chr4	152349961	152349962	rs2724564	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	4q31.3	NR	rs2724564-T	0.556689	6E-46		0.026249	[0.023-0.03] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1747	chr4	152355267	152355268	rs2709828	29930801	Yamada Y	2018-05-29	Biomed Rep	Identification of nine genes as novel susceptibility loci for early-onset ischemic stroke, intracerebral hemorrhage, or subarachnoid hemorrhage.	Intracerebral hemorrhage	261 Japanese ancestry intracerebral hemorrhage cases, 176 Japanese ancestry subarachnoid hemorrhage cases, 5,742 Japanese ancestry controls	NA	4q31.3	FAM160A1	rs2709828-C	0.67	6E-6	(subarachnoid)	1.75		Illumina [30970]	N
1747	chr4	152364768	152364769	rs57129396	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	4q31.3	FAM160A1	rs57129396-C	0.5284	2E-12		0.02590936	[0.019-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
1747	chr4	152372958	152372958	rs112946935	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	4q31.3	FAM160A1	rs112946935-CT	0.564	2E-22		0.0187	[0.015-0.022] unit decrease	Affymetrix [18391927] (imputed)	N
1747	chr4	152399323	152399324	rs4479686	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	4q31.3		rs4479686-?	NR	2E-21				NR [~ 8900000] (imputed)	N
1747	chr4	152416777	152416777	rs11450043	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	4q31.3	FAM160A1	rs11450043-CT	0.5221	4E-10		0.0236165	[0.016-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
1747	chr4	152430911	152430911	rs113966280	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	4q31.3		rs113966280-TTG	NR	2E-12		0.0121	[0.0088-0.0154] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1748	chr4	152441913	152441914	rs6535803	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	4q31.3	FAM160A1	rs6535803-A	0.546269	4E-13		0.016218998	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1748	chr4	152452656	152452657	rs10711474	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	4q31.3	FAM160A1	rs10711474-C	0.552118	1E-26		0.024566256	[0.02-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1748	chr4	152452656	152452657	rs10711474	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	4q31.3	FAM160A1	rs10711474-C	0.552127	3E-27		0.02482305	[0.02-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1748	chr4	152456723	152456724	rs1443094	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	4q31.3	NR	rs1443094-?	NR	4E-7		5.077	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1748	chr4	152543782	152543783	rs6825241	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	4q31.3	NR	rs6825241-?		5E-15		0.0169583	[0.013-0.021] unit decrease	Affymetrix [19400418] (imputed)	N
1748	chr4	152558977	152558978	rs4696278	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	4q31.3	Intergenic	rs4696278-A	0.6671	5E-15		0.0162	[0.012-0.02] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1749	chr4	152589438	152589439	rs6816002	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	4q31.3	Intergenic	rs6816002-A	0.3686	5E-17	(MTAG)	0.0156	[0.012-0.019] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1749	chr4	152589438	152589439	rs6816002	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	4q31.3	Intergenic	rs6816002-A	0.3679	6E-12	(MTAG)	0.0118	[0.0085-0.0151] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1749	chr4	152592932	152592933	rs6535809	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	4q31.3	NR	rs6535809-A	0.484095	1E-11		0.042832118	[0.03-0.055] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1749	chr4	152592932	152592933	rs6535809	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	4q31.3	Intergenic	rs6535809-A	0.5148	5E-15	(MTAG)	0.0179	[0.013-0.022] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1749	chr4	152592932	152592933	rs6535809	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	4q31.3	Intergenic	rs6535809-A	0.5148	7E-12		0.0196	[0.014-0.025] unit increase	Affymetrix, Illumina [10100000] (imputed)	N
1749	chr4	152592932	152592933	rs6535809	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	4q31.3	NR	rs6535809-A	NR	7E-13		7.186	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1749	chr4	152594406	152594407	rs6813516	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Verbal-numerical reasoning	171,304 British ancestry individuals	NA	4q31.3		rs6813516-?	NR	1E-9				NR [7857346] (imputed)	N
1749	chr4	152604030	152604031	rs6840360	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	4q31.3	PET112	rs6840360-A	NR	7E-12		0.020500738	[0.015-0.026] unit decrease	Affymetrix [NR]	N
1749	chr4	152604722	152604723	rs6823423	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	4q31.3	Intergenic	rs6823423-T	0.5123	4E-9	(MTAG)	0.0077	[0.0052-0.0102] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1749	chr4	152606701	152606702	rs4696105	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	4q31.3		rs4696105-G	NR	2E-8		0.0113	[0.0074-0.0152] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
1749	chr4	152606974	152606975	rs4696108	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	4q31.3	NR	rs4696108-T	NR	2E-10		6.399	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1749	chr4	152607190	152607191	rs12647420	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	4q31.3	NR	rs12647420-?	NR	1E-7		5.258	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1749	chr4	152633666	152633667	rs1355413	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	4q31.3		rs1355413-?	NR	1E-7				NR [~ 8900000] (imputed)	N
1749	chr4	152634120	152634121	rs28608075	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking status (current vs never)	40,456 European ancestry current smokers, 13,511 African American current smokers, 2,920 Hispanic current smokers, 59,056 European ancestry mostly never smokers, 17,751 African American mostly never smokers, 7,195 Hispanic mostly never smokers	NA	4q31.3		rs28608075-C	NR	1E-8	(EA)	0.92	NR	Affymetrix [~ 79000000] (imputed)	N
1749	chr4	152670764	152670765	rs12506000	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	4q31.3	PET112	rs12506000-T	NR	3E-8		0.0178116	[0.012-0.024] unit decrease	Affymetrix [323123] (imputed)	N
1749	chr4	152677579	152677580	rs17275724	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Large artery stroke	350 Indian ancestry cases, 2,154 Indian ancestry controls	NA	4q31.3		rs17275724-?	NR	7E-6		1.0512315	[1.02857468306086-1.07438745700092]	Illumina [up to 7827597] (imputed)	N
1749	chr4	152682801	152682802	rs3762907	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip and palate	121 Asian ancestry cases, 159 European ancestry cases, 285 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	4q31.3	NR	rs3762907-?	NR	5E-6		1.96	[1.73-2.21]	Illumina [539000] (imputed)	N
1750	chr4	152720702	152720703	rs13146981	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	4q31.3	ENSG00000249184	rs13146981-T	NR	9E-10		6.126	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1750	chr4	152737855	152737856	rs7684366	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Reaction time	330,024 British ancestry individuals	NA	4q31.3		rs7684366-?	NR	9E-9				NR [7857346] (imputed)	N
1750	chr4	152749594	152749595	rs1385253	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	4q31.3	ENSG00000249184	rs1385253-?	NR	2E-8		0.0098623	[0.0064-0.0133] unit decrease	Affymetrix [805426] (imputed)	N
1750	chr4	152768950	152768951	rs361212	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	4q31.3	ENSG00000249708	rs361212-?	NR	2E-8		0.0098301	[0.0064-0.0133] unit decrease	Affymetrix [805426] (imputed)	N
1750	chr4	152782877	152782878	rs488400	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	4q31.3	NR	rs488400-T	0.4161	1E-6	(Trans/trans-18:2, EA)	0.0019	[0.0011-0.0027] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1750	chr4	152785360	152785361	rs361171	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	4q31.3	NR	rs361171-T	0.5657	2E-6	(Trans/trans-18:2, EA)	0.0014	[0.00081-0.00199] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1750	chr4	152798620	152798621	rs41462346	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	4q31.3	NR	rs41462346-?	NR	4E-7				Affymetrix [NR]	N
1750	chr4	152827978	152827979	rs522743	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	4q31.3	ENSG00000249818	rs522743-A	NR	3E-8		0.017068205	[0.011-0.023] unit increase	Affymetrix [NR]	N
1751	chr4	152854257	152854258	rs360938	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Cuneus cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	4q31.3	NR	rs360938-?		6E-6				Illumina [4322238] (imputed)	N
1751	chr4	152907699	152907700	rs360929	17903297	Seshadri S	2007-09-19	BMC Med Genet	Genetic correlates of brain aging on MRI and cognitive test measures: a genome-wide association and linkage analysis in the Framingham Study.	Volumetric brain MRI	705 European ancestry individuals	NA	4q31.3	intergenic	rs360929-?	NR	9E-6	(ALTHBV)			Affymetrix [70897]	N
1751	chr4	152908168	152908169	rs360932	23453885	Smoller JW	2013-02-27	Lancet	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NA	4q31.3	intergenic	rs360932-A		8E-6	(Modelling analysis)	1.06	[1.03-1.08]	NR [1252901] (imputed)	N
1751	chr4	152931435	152931436	rs750090	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	4q31.3		rs750090-C	NR	8E-11		0.0118	[0.0083-0.0153] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1751	chr4	152931435	152931436	rs750090	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	4q31.3		rs750090-C	NR	3E-11		0.0138	[0.0097-0.0179] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1751	chr4	152931435	152931436	rs750090	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	4q31.3		rs750090-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1752	chr4	152964891	152964892	rs73865608	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		4q31.3	Intergenic	rs73865608-A	0.004	1E-6	(liability model)	0.63	[0.38-0.88] unit increase	NR [19725427] (imputed)	N
1752	chr4	152967729	152967730	rs7654909	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	4q31.3		rs7654909-C	0.376	8E-9				Affymetrix [10369434] (imputed)	N
1752	chr4	152967940	152967941	rs7655455	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	4q31.3	NR	rs7655455-T	0.664	7E-10		0.00861357	[0.0059-0.0113] unit increase	NR [~ 9732723] (imputed)	N
1752	chr4	152968371	152968372	rs10004020	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week)	up to 941,280 European ancestry individuals	NA	4q31.3	NR	rs10004020-A	0.72	2E-8		0.009052333	[0.0059-0.0122] unit increase	NR [~ 10000000] (imputed)	N
1752	chr4	153000345	153000346	rs7677733	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	4q31.3		rs7677733-C	NR	2E-14		0.0182	[0.013-0.023] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
1752	chr4	153002783	153002784	rs2059489	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	4q31.3		rs2059489-A	0.440371	6E-10		0.013967289	[0.0095-0.0184] unit decrease	Affymetrix [93095623] (imputed)	N
1752	chr4	153002783	153002784	rs2059489	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q31.3	NR	rs2059489-A	0.38134	2E-11				Affymetrix, Illumina [23467995] (imputed)	N
1752	chr4	153002783	153002784	rs2059489	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	4q31.3	NR	rs2059489-A	0.442499	1E-12		0.013481	[0.0098-0.0172] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1752	chr4	153005715	153005716	rs4696314	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	334,944 European ancestry, NR ancestry individuals	NA	4q31.3		rs4696314-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1752	chr4	153005715	153005716	rs4696314	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	334,468 European ancestry, NR ancestry individuals	NA	4q31.3		rs4696314-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1752	chr4	153005715	153005716	rs4696314	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	4q31.3		rs4696314-C	0.512409	2E-13		0.016412292	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1752	chr4	153005715	153005716	rs4696314	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	4q31.3		rs4696314-C	0.512441	1E-21		0.021304127	[0.017-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1752	chr4	153005715	153005716	rs4696314	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	4q31.3		rs4696314-C	0.512447	3E-12		0.015504482	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1752	chr4	153005715	153005716	rs4696314	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q31.3	NR	rs4696314-C	0.445329	3E-11				Affymetrix, Illumina [23472807] (imputed)	N
1752	chr4	153005715	153005716	rs4696314	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	4q31.3	NR	rs4696314-C	0.515076	9E-14		0.014209	[0.01-0.018] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1752	chr4	153006311	153006312	rs7665985	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Intake of total sugars	174,424 European ancestry individuals	NA	4q31.3	RP11-18H21.1	rs7665985-T	0.36	7E-6		0.78	[0.45-1.11] g/day increase	Affymetrix [10353649] (imputed)	N
1752	chr4	153020096	153020097	rs13111795	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	4q31.3		rs13111795-G	0.575	2E-10		0.008	[0.006-0.01] unit decrease	NR [NR] (imputed)	N
1752	chr4	153020560	153020561	rs7668917	32771030	Tangtanatakul P	2020-08-08	Arthritis Res Ther	Meta-analysis of genome-wide association study identifies FBN2 as a novel locus associated with systemic lupus erythematosus in Thai population.	Systemic lupus erythematosus	487 Thai cases, 1,606 Thai controls	405 Thai cases, 1,590 Thai controls	4q31.3	RNA5SP169, RP11-18H21.1	rs7668917-A	0.27	6E-6		1.3285	[NR]	Illumina [421909] (imputed)	N
1752	chr4	153028859	153028860	rs17276464	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	4q31.3	NA	rs17276464-T	0.4143	5E-9		0.0096	[0.0065-0.0127] unit increase	NR [~ 27400000] (imputed)	N
1752	chr4	153028859	153028860	rs17276464	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	4q31.3	NA	rs17276464-T	0.4143	5E-9		0.0096	[0.0065-0.0127] unit increase	NR [~ 27400000] (imputed)	N
1752	chr4	153032048	153032049	rs6843300	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	4q31.3	NR	rs6843300-?	NR	1E-6		0.0088596	[0.0053-0.0124] unit decrease	Affymetrix [805426] (imputed)	N
1752	chr4	153033432	153033433	rs62319005	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	4q31.3	NR	rs62319005-C	0.434	6E-9		0.00634378	[0.0042-0.0085] unit increase	NR [9732723] (imputed)	N
1752	chr4	153068836	153068837	rs35111904	34231218	McDonough CW	2021-07-07	Clin Pharmacol Ther	Adverse Cardiovascular Outcomes and Antihypertensive treatment: A Genome-Wide Interaction Meta-Analysis in the International Consortium for Antihypertensive Pharmacogenomics Studies (ICAPS).	Adverse cardiovascular outcome x beta blockers interaction in hypertension	9,195 European ancestry individuals	NA	4q31.3		rs35111904-A	0.39	8E-7				Affymetrix, Illumina [6400000] (imputed)	N
1752	chr4	153069287	153069288	rs34205115	34231218	McDonough CW	2021-07-07	Clin Pharmacol Ther	Adverse Cardiovascular Outcomes and Antihypertensive treatment: A Genome-Wide Interaction Meta-Analysis in the International Consortium for Antihypertensive Pharmacogenomics Studies (ICAPS).	Adverse cardiovascular outcome x beta blockers interaction in hypertension	9,195 European ancestry individuals	NA	4q31.3		rs34205115-T	0.39	8E-7				Affymetrix, Illumina [6400000] (imputed)	N
1752	chr4	153073955	153073956	rs1962001	34231218	McDonough CW	2021-07-07	Clin Pharmacol Ther	Adverse Cardiovascular Outcomes and Antihypertensive treatment: A Genome-Wide Interaction Meta-Analysis in the International Consortium for Antihypertensive Pharmacogenomics Studies (ICAPS).	Adverse cardiovascular outcome x beta blockers interaction in hypertension	9,195 European ancestry individuals	NA	4q31.3		rs1962001-C	0.609	4E-7				Affymetrix, Illumina [6400000] (imputed)	N
1752	chr4	153075490	153075491	rs6827083	34231218	McDonough CW	2021-07-07	Clin Pharmacol Ther	Adverse Cardiovascular Outcomes and Antihypertensive treatment: A Genome-Wide Interaction Meta-Analysis in the International Consortium for Antihypertensive Pharmacogenomics Studies (ICAPS).	Adverse cardiovascular outcome x beta blockers interaction in hypertension	9,195 European ancestry individuals	NA	4q31.3		rs6827083-A	0.608	6E-7				Affymetrix, Illumina [6400000] (imputed)	N
1753	chr4	153093813	153093814	rs72736220	28644415	Guenard F	2017-06-23	Nutrients	Genome-Wide Association Study of Dietary Pattern Scores.	Western dietary pattern	141 individuals	NA	4q31.3	LOC100996286	rs72736220-?	NR	5E-7				Illumina [2668805]	N
1753	chr4	153095124	153095125	rs13107216	34231218	McDonough CW	2021-07-07	Clin Pharmacol Ther	Adverse Cardiovascular Outcomes and Antihypertensive treatment: A Genome-Wide Interaction Meta-Analysis in the International Consortium for Antihypertensive Pharmacogenomics Studies (ICAPS).	Adverse cardiovascular outcome x beta blockers interaction in hypertension	9,195 European ancestry individuals	NA	4q31.3		rs13107216-A	0.387	5E-7				Affymetrix, Illumina [6400000] (imputed)	N
1754	chr4	153248142	153248143	rs4315757	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	4q31.3	NR	rs4315757-?	NR	3E-7				Affymetrix [NR]	N
1754	chr4	153254120	153254121	rs7685296	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	4q31.3	TMEM154	rs7685296-T	0.279364611974842	2E-10		0.0511	[0.035-0.067] unit decrease	NR [5035015] (imputed)	N
1754	chr4	153275700	153275701	rs2203644	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	4q31.3		rs2203644-?	NR	3E-21				NR [~ 8900000] (imputed)	N
1754	chr4	153291512	153291513	rs11931711	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	4q31.3	FBXW7	rs11931711-T	0.281978	1E-17		0.020483524	[0.016-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1754	chr4	153291512	153291513	rs11931711	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	4q31.3	FBXW7	rs11931711-T	0.281991	4E-19		0.02205774	[0.017-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1754	chr4	153291512	153291513	rs11931711	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q31.3	NR	rs11931711-T	0.322489	2E-15				Affymetrix, Illumina [19872809] (imputed)	N
1754	chr4	153291512	153291513	rs11931711	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	4q31.3	NR	rs11931711-T	0.282445	3E-18		0.019253	[0.015-0.024] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
1755	chr4	153397822	153397823	rs7660590	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	4q31.3	TMEM154	rs7660590-C	0.5	4E-13		1.07	1.05-1.08	Illumina [12557761] (imputed)	N
1755	chr4	153480418	153480419	rs74289478	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	4q31.3		rs74289478-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1755	chr4	153483293	153483294	rs7686964	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	4q31.3		rs7686964-G	0.54037757	2E-15		0.078602605	[0.059-0.098] unit decrease	Illumina [13134967] (imputed)	N
1755	chr4	153483293	153483294	rs7686964	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	4q31.3		rs7686964-G	NR	1E-14		0.0605	[0.045-0.076] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1756	chr4	153489146	153489146	rs140780501	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	4q31.3		rs140780501-CCT	NR	7E-12		0.0137	[0.0098-0.0176] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
1756	chr4	153495514	153495515	rs10011174	29358691	Bonas-Guarch S	2018-01-22	Nat Commun	Re-analysis of public genetic data reveals a rare X-chromosomal variant associated with type 2 diabetes.	Type 2 diabetes	19,693 European ancestry cases, 107,308 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls		4q31.3	TMEM154	rs10011174-G	NR	8E-6		1.0790704		Affymetrix, Illumina [1918233] (imputed)	N
1756	chr4	153504294	153504295	rs6819331	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	4q31.3	NR	rs6819331-C	0.6796	2E-16		0.0404	[0.031-0.05] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1756	chr4	153511639	153511640	rs4696326	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	4q31.3		rs4696326-?	NR	6E-8				NR [~ 8900000] (imputed)	N
1756	chr4	153513368	153513369	rs7669833	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	4q31.3	TMEM154	rs7669833-T	0.7045	1E-14		1.06	[1.04-1.07]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1756	chr4	153520278	153520279	rs10011838	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	46,511 Asian ancestry cases, 169,776 Asian ancestry controls	NA	4q31.3	NR	rs10011838-G	0.4621	1E-17		0.0746	[0.058-0.092] unit increase	Affymetrix, Illumina [1077427] (imputed)	N
1756	chr4	153520278	153520279	rs10011838	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	4q31.3		rs10011838-A	0.543665882	1E-21		0.92266905	[0.907575767-0.938013345]	Illumina [8919992] (imputed)	N
1756	chr4	153520278	153520279	rs10011838	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	4q31.3	TMEM154	rs10011838-G	0.493	1E-27		1.08	[1.06-1.09]	Affymetrix, Illumina [11800000] (imputed)	N
1756	chr4	153520278	153520279	rs10011838	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	4q31.3	TMEM154	rs10011838-G	0.46	3E-17		1.08	1.06-1.10	Illumina [12557761] (imputed)	N
1756	chr4	153520278	153520279	rs10011838	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	4q31.3		rs10011838-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1756	chr4	153520474	153520475	rs6813195	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	4q31.3		rs6813195-T	0.527347381	1E-19		0.083642595	[0.066-0.102] unit decrease	Illumina [13429769] (imputed)	N
1756	chr4	153520474	153520475	rs6813195	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	4q31.3		rs6813195-T	NR	4E-21		0.062	[0.049-0.075] unit decrease	Affymetrix, Illumina [25845091] (imputed)	N
1756	chr4	153520474	153520475	rs6813195	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	4q31.3	NR	rs6813195-C	0.6486	8E-31		0.0463	[0.038-0.054] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1756	chr4	153520474	153520475	rs6813195	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	4q31.3	TMEM154	rs6813195-T	0.2913	7E-9	(EA)	0.0639	[0.042-0.085] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1756	chr4	153520474	153520475	rs6813195	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	4q31.3	TMEM154	rs6813195-T	0.2913	2E-15		0.061	[0.045-0.077] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1756	chr4	153520474	153520475	rs6813195	24509480	Mahajan A	2014-02-09	Nat Genet	Genome-wide trans-ancestry meta-analysis provides insight into the genetic architecture of type 2 diabetes susceptibility.	Type 2 diabetes	12,171 European ancestry cases, 56,862 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls	21,491 European ancestry cases, 55,647 European ancestry controls	4q31.3	TMEM154	rs6813195-C		4E-14		1.08	[1.06-1.10]	Affymetrix, Illumina [2500000] (imputed)	N
1756	chr4	153559669	153559670	rs72956768	29077507	Chen H	2017-10-27	Am J Respir Cell Mol Biol	Multi-ethnic Meta-analysis Identifies RAI1 as a Possible Obstructive Sleep Apnea Related Quantitative Trait Locus in Men.	Obstructive sleep apnea during REM sleep (apnea hypopnea index)	677 African American women, 544 African American men, 115 Asian women, 113 Asian men, 1,825 European ancestry women, 3,902 European ancestry men,  7,492 Hispanic women, 5,065 Hispanic men	NA	4q31.3	TMEM154	rs72956768-G		5E-7	(men)	0.563	[NR] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1756	chr4	153559955	153559956	rs535789455	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference	1,254 whole genome sequenced European ancestry individuals, 3,074 whole genome sequenced individuals, 29,716 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 701 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,050 Mylopotamos (founder/genetic isolate) individuals, 883 Pomak (founder/genetic isolate) individuals	205,909 European ancestry individuals	4q31.3	TMEM154	rs535789455-T	0.0013	6E-6		1.2063	[0.68-1.73] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1756	chr4	153563945	153563946	rs58951867	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q31.3	NR	rs58951867-G	0.01742	7E-9	(PIPOX)	0.2701	NR unit increase	Illumina [1671387] (imputed)	N
1756	chr4	153588499	153588500	rs4447840	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (unclassified genus belonging to family Lachnospiraceae)	1,068 Japanese ancestry individuals	NA	4q31.3	TMEM154, RP11-768B22.2	rs4447840-G	0.01	4E-6	(female)	0.293	[0.17-0.42] unit increase	Illumina [6380737] (imputed)	N
1756	chr4	153604877	153604878	rs115580478	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q31.3	NR	rs115580478-A	0.0122	2E-8	(CYP2A6)	0.7677	NR unit increase	Illumina [1671387] (imputed)	N
1756	chr4	153616167	153616168	rs117435658	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q31.3	NR	rs117435658-T	0.01045	2E-8	(CYP2A6)	0.8298	NR unit increase	Illumina [1671387] (imputed)	N
1757	chr4	153626113	153626114	rs4513549	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (unclassified genus belonging to the order Clostridiales)	1,068 Japanese ancestry individuals	NA	4q31.3	intergenic	rs4513549-T	0.03	3E-6	(female)	0.616	[0.36-0.87] unit increase	Illumina [6380737] (imputed)	N
1757	chr4	153662238	153662239	rs12505188	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	4q31.3	NR	rs12505188-C	NR	3E-15		0.0304884	[0.023-0.038] unit increase	Affymetrix [16832071] (imputed)	N
1757	chr4	153662238	153662239	rs12505188	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	4q31.3	intergenic	rs12505188-C	0.3979	1E-9		0.02205701	[0.015-0.029] unit increase	Affymetrix [~ 2500000] (imputed)	N
1757	chr4	153664743	153664744	rs4453916	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	4q31.3		rs4453916-A	0.400449	3E-10		0.0148289	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
1757	chr4	153664743	153664744	rs4453916	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	4q31.3	NR	rs4453916-A	0.400001	9E-11		0.014425	[0.01-0.019] SD unit decrease	Affymetrix, Illumina [50282193] (imputed)	N
1757	chr4	153669403	153669404	rs4540026	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Faecalibacterium)	527 Japanese ancestry men	NA	4q31.3	intergenic	rs4540026-C	0.22	8E-6		0.0807	[0.046-0.116] unit decrease	Illumina [544877]	N
1757	chr4	153701129	153701130	rs4619875	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	4q31.3	ARFIP1	rs4619875-T	0.403078	1E-38		0.029436192	[0.025-0.034] unit increase	Affymetrix [93095623] (imputed)	N
1757	chr4	153701129	153701130	rs4619875	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	4q31.3	ARFIP1	rs4619875-T	0.402829	5E-15		0.01794151	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1757	chr4	153701129	153701130	rs4619875	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q31.3	NR	rs4619875-C	0.602217	3E-34				Affymetrix, Illumina [22063850] (imputed)	N
1757	chr4	153701129	153701130	rs4619875	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	4q31.3	NR	rs4619875-C	0.599273	3E-37		0.024541	[0.021-0.028] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
1757	chr4	153701129	153701130	rs4619875	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q31.3	NR	rs4619875-T	0.420829	4E-11				Affymetrix, Illumina [21126107] (imputed)	N
1757	chr4	153701129	153701130	rs4619875	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	4q31.3		rs4619875-?	NR	2E-34				NR [~ 8900000] (imputed)	N
1757	chr4	153701129	153701130	rs4619875	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	4q31.3	ARFIP1	rs4619875-T	0.404	7E-22	(Arfaptin-1, ARFIP1.13488.3.3)	0.24	[0.2-0.28] unit increase	Affymetrix [10572788] (imputed)	N
1757	chr4	153720371	153720377	rs142607265	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	4q31.3	ARFIP1	rs142607265-G	0.429237	2E-12		0.01603563	[0.012-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1757	chr4	153720371	153720377	rs142607265	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	4q31.3	ARFIP1	rs142607265-G	0.429241	2E-12		0.015948877	[0.012-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1757	chr4	153720371	153720377	rs142607265	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	4q31.3	ARFIP1	rs142607265-G	0.429226	2E-12		0.015945992	[0.012-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1758	chr4	153838012	153838013	rs4276264	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	4q31.3		rs4276264-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1758	chr4	153841203	153841204	rs7667462	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	4q31.3		rs7667462-A	NR	3E-8		0.011	[0.0071-0.0149] unit decrease	Affymetrix, Illumina [20536605] (imputed)	N
1758	chr4	153860171	153860172	rs1105889	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	4q31.3	FHDC1	rs1105889-A	0.424562	3E-12		0.015859438	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1759	chr4	153893353	153893354	rs11099864	17362836	Schymick JC	2007-02-20	Lancet Neurol	Genome-wide genotyping in amyotrophic lateral sclerosis and neurologically normal controls: first stage analysis and public release of data.	Amyotrophic lateral sclerosis	276 European ancestry cases, 271 European ancestry controls	NA	4q31.3	KIAA1727	rs11099864-?	NR	9E-6		1.0	[0.80-1.40]	Illumina [549062]	N
1759	chr4	153896159	153896160	rs77708442	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	4q31.3	FHDC1	rs77708442-A	0.032	8E-6	(IGFBP-3 )	0.03	[NR] ng/mL increase	Illumina [899892]	N
1759	chr4	153907878	153907879	rs13137453	31164008	Mullins N	2019-06-05	Am J Psychiatry	GWAS of Suicide Attempt in Psychiatric Disorders and Association With Major Depression Polygenic Risk Scores.	Suicide attempts in major depressive disorder	1,622 European ancestry attempters, 8,786 European ancestry nonattempters	NA	4q31.3	NR	rs13137453-G	0.020000000000000018	1E-6		2.173913	[1.59-2.94]	NR [8482392] (imputed)	N
1759	chr4	153946197	153946198	rs7697543	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	4q31.3	intergenic	rs7697543-G	0.4112	2E-9		0.0220661	[0.015-0.029] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1759	chr4	153955272	153955273	rs869039	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	4q31.3	RP11-285C1.2	rs869039-G	0.39474	2E-13		0.016998505	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1759	chr4	153965723	153965724	rs747019395	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	4q31.3	RP11-285C1.2	rs747019395-A	0.0017	6E-6		1.1069	[0.63-1.58] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1760	chr4	154036539	154036540	rs6827197	33105104	Hoi-Yee Li G	2020-12-01	Eur J Endocrinol	Genome-wide meta-analysis reveals novel susceptibility loci for thyrotoxic periodic paralysis.	Thyrotoxic periodic paralysis	319 Chinese ancestry cases, 3,516 Chinese ancestry controls	NA	4q31.3	TRIM2, RP11-285C1.2	rs6827197-T	0.0253	3E-9		4.074712	3.60862371742437-4.54079971742437	Illumina [7077246] (imputed)	N
1760	chr4	154036539	154036540	rs6827197	33105104	Hoi-Yee Li G	2020-12-01	Eur J Endocrinol	Genome-wide meta-analysis reveals novel susceptibility loci for thyrotoxic periodic paralysis.	Thyrotoxic periodic paralysis	306 Chinese ancestry male cases, 3,516 Chinese ancestry controls	NA	4q31.3	TRIM2, RP11-285C1.2	rs6827197-T	0.0258	2E-9		4.391628	2.71745559637683-7.09722597532198	Illumina [7076963] (imputed)	N
1760	chr4	154065797	154065798	rs11726848	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	4q31.3		rs11726848-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1760	chr4	154071859	154071860	rs76210166	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	4q31.3	TRIM2	rs76210166-C	0.796934	3E-9		0.0136115	[0.0091-0.0181] unit increase	NR [13737936] (imputed)	N
1760	chr4	154123720	154123721	rs6846721	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	4q31.3	TRIM2	rs6846721-T	0.694005	4E-8	(110 ms)	0.034434	[0.022-0.047] unit increase	Affymetrix [10000000] (imputed)	N
1760	chr4	154123720	154123721	rs6846721	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	4q31.3	TRIM2	rs6846721-T	0.694005	3E-9	(64 ms)	0.0374481	[0.025-0.05] unit increase	Affymetrix [10000000] (imputed)	N
1760	chr4	154123720	154123721	rs6846721	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	4q31.3	TRIM2	rs6846721-T	0.694005	3E-8	(82 ms)	0.0348262	[0.023-0.047] unit increase	Affymetrix [10000000] (imputed)	N
1760	chr4	154123720	154123721	rs6846721	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	4q31.3	TRIM2	rs6846721-T	0.694005	3E-8	(122 ms)	0.0336729	[0.021-0.046] unit increase	Affymetrix [10000000] (imputed)	N
1760	chr4	154123720	154123721	rs6846721	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	4q31.3	TRIM2	rs6846721-T	0.694005	3E-8	(104 ms)	0.0346402	[0.022-0.047] unit increase	Affymetrix [10000000] (imputed)	N
1760	chr4	154123720	154123721	rs6846721	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	4q31.3	TRIM2	rs6846721-T	0.694005	2E-9	(112 ms)	0.0379024	[0.026-0.05] unit increase	Affymetrix [10000000] (imputed)	N
1760	chr4	154123720	154123721	rs6846721	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	4q31.3	TRIM2	rs6846721-T	0.694005	2E-8	(62 ms)	0.0350273	[0.023-0.047] unit increase	Affymetrix [10000000] (imputed)	N
1760	chr4	154123720	154123721	rs6846721	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	4q31.3	TRIM2	rs6846721-T	0.694005	2E-8	(114 ms)	0.0349774	[0.023-0.047] unit increase	Affymetrix [10000000] (imputed)	N
1760	chr4	154123720	154123721	rs6846721	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	4q31.3	TRIM2	rs6846721-T	0.694005	1E-8	(120 ms)	0.0350432	[0.023-0.047] unit increase	Affymetrix [10000000] (imputed)	N
1760	chr4	154123720	154123721	rs6846721	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	4q31.3	TRIM2	rs6846721-T	0.694005	1E-8	(118 ms)	0.0354651	[0.023-0.048] unit increase	Affymetrix [10000000] (imputed)	N
1761	chr4	154153999	154154000	rs12644284	21654844	Briggs FB	2011-06-09	Genes Immun	Genome-wide association study of severity in multiple sclerosis.	Multiple sclerosis	1,470 European ancestry cases	NA	4q31.3	TRIM2	rs12644284-?	0.67	4E-6	(Extreme)	2.04	[NR]	Affymetrix [2110417] (imputed)	N
1761	chr4	154163393	154163394	rs10009522	30898391	Lawrenson K	2019-03-19	Gynecol Oncol	Genome-wide association studies identify susceptibility loci for epithelial ovarian cancer in east Asian women.	Epithelial ovarian cancer	3,238 East Asian ancestry cases, 4,083 East Asian ancestry controls	NA	4q31.3		rs10009522-?	NR	9E-6	(overall)	1.27		Illumina [11595112] (imputed)	N
1761	chr4	154190964	154190965	rs72729610	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	4q31.3	NR	rs72729610-A	0.832892	8E-18		0.00991354	[0.0077-0.0121] unit increase	Affymetrix [16582909] (imputed)	N
1761	chr4	154190964	154190965	rs72729610	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	4q31.3	NR	rs72729610-A	0.833598	9E-11		0.00919762	[0.0062-0.0122] unit increase	Affymetrix [16582621] (imputed)	N
1761	chr4	154190964	154190965	rs72729610	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	4q31.3	NR	rs72729610-A	0.832892	5E-16		0.0100277	[0.0076-0.0125] unit increase	Affymetrix [16582965] (imputed)	N
1761	chr4	154190964	154190965	rs72729610	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	4q31.3	NR	rs72729610-A	0.833598	5E-10		0.00979142	[0.0066-0.013] unit increase	Affymetrix [16582614] (imputed)	N
1761	chr4	154190964	154190965	rs72729610	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	4q31.3	TRIM2	rs72729610-G	NR	5E-7	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1761	chr4	154190964	154190965	rs72729610	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	4q31.3	TRIM2	rs72729610-G	NR	3E-7				Affymetrix, Illumina [NR] (imputed)	N
1761	chr4	154190964	154190965	rs72729610	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	4q31.3	TRIM2	rs72729610-G	NR	2E-8				Affymetrix, Illumina [NR] (imputed)	N
1761	chr4	154190964	154190965	rs72729610	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	4q31.3	TRIM2	rs72729610-G	NR	2E-7	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1761	chr4	154190964	154190965	rs72729610	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	4q31.3	TRIM2	rs72729610-G	NR	5E-7	(EA)	1.224	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1761	chr4	154190964	154190965	rs72729610	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	4q31.3	TRIM2	rs72729610-G	NR	4E-7		1.133	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1761	chr4	154190964	154190965	rs72729610	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	4q31.3	TRIM2	rs72729610-G	NR	5E-7		1.375	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1761	chr4	154190964	154190965	rs72729610	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	4q31.3	TRIM2	rs72729610-G	NR	2E-6	(EA)	1.578	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1761	chr4	154190964	154190965	rs72729610	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	4q31.3	TRIM2	rs72729610-G	NR	6E-9				Affymetrix, Illumina [NR] (imputed)	N
1761	chr4	154190964	154190965	rs72729610	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	4q31.3	TRIM2	rs72729610-G	NR	2E-7	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1761	chr4	154190964	154190965	rs72729610	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	4q31.3	TRIM2	rs72729610-G	NR	6E-8				Affymetrix, Illumina [NR] (imputed)	N
1761	chr4	154190964	154190965	rs72729610	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	4q31.3	TRIM2	rs72729610-G	NR	3E-7	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1761	chr4	154190964	154190965	rs72729610	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	4q31.3	TRIM2	rs72729610-G	NR	3E-8		0.008	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1761	chr4	154190964	154190965	rs72729610	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	4q31.3	TRIM2	rs72729610-G	NR	2E-6	(EA)	0.007	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1761	chr4	154191225	154191226	rs41280463	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	4q31.3		rs41280463-A	NR	8E-11		0.0192	[0.013-0.025] unit decrease	Affymetrix, Illumina [20536134] (imputed)	N
1761	chr4	154191225	154191226	rs41280463	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	4q31.3	TRIM2	rs41280463-G	0.834769	1E-16		0.00252201	[0.0019-0.0031] unit increase	Affymetrix [13995440] (imputed)	N
1761	chr4	154191225	154191226	rs41280463	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	4q31.3	TRIM2	rs41280463-?	NR	6E-10		0.0213	[0.015-0.027] unit decrease	Affymetrix [5701386] (imputed)	N
1761	chr4	154191225	154191226	rs41280463	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	4q31.3	NR	rs41280463-G	0.832659	1E-10		0.0103347	[0.0071-0.0136] unit increase	Affymetrix [16585854] (imputed)	N
1761	chr4	154191225	154191226	rs41280463	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	4q31.3	NR	rs41280463-G	0.832659	4E-7		0.00952899	[0.0058-0.0132] unit increase	Affymetrix [16585866] (imputed)	N
1761	chr4	154208277	154208278	rs72729623	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	4q31.3	TRIM2	rs72729623-C	0.856584	4E-8		0.0153385	[0.0098-0.0208] unit increase	Affymetrix [NR] (imputed)	N
1761	chr4	154224047	154224048	rs17369400	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	4q31.3	NR	rs17369400-G	NR	1E-9		0.024	[0.016-0.032] unit decrease	Affymetrix [9000000] (imputed)	N
1761	chr4	154224047	154224048	rs17369400	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	4q31.3	TRIM2	rs17369400-A	0.9053	7E-9		0.0208	[0.014-0.028] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1761	chr4	154254533	154254534	rs77945361	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	4q31.3		rs77945361-A	NR	9E-12		0.0226	[0.016-0.029] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
1761	chr4	154254533	154254534	rs77945361	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	4q31.3		rs77945361-A	NR	1E-8		0.0201	[0.013-0.027] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
1761	chr4	154262550	154262551	rs6535914	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	4q31.3		rs6535914-C	0.36	6E-9		5.82	z score increase	Affymetrix [9061022] (imputed)	N
1761	chr4	154262550	154262551	rs6535914	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	4q31.3	NR	rs6535914-C	0.389	3E-8				NR [9056863] (imputed)	N
1762	chr4	154372210	154372210	rs10649602	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	4q31.3		rs10649602-CTT	NR	3E-13		0.0198	[0.015-0.025] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
1762	chr4	154374983	154374984	rs6817170	23648065	Low SK	2013-05-04	Cancer Sci	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (all antimicrotubule drugs)	371 Japanese ancestry cases, 825 Japanese ancestry controls	NA	4q31.3	KIAA0922	rs6817170-G	0.286	9E-6	(Allelic model)	1.517	[1.264-1.822]	Illumina [733202]	N
1762	chr4	154379958	154379959	rs9999331	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q31.3	NR	rs9999331-C	0.362112	1E-11				Affymetrix, Illumina [23467995] (imputed)	N
1762	chr4	154385593	154385594	rs12644734	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	4q31.3		rs12644734-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1762	chr4	154385924	154385925	rs7687559	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	4q31.3	KIAA0922	rs7687559-C	0.399392	5E-17		0.01930069	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1762	chr4	154385924	154385925	rs7687559	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	4q31.3	KIAA0922	rs7687559-C	0.399382	1E-20		0.021372933	[0.017-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1762	chr4	154385924	154385925	rs7687559	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	4q31.3	KIAA0922	rs7687559-C	0.399442	4E-11		0.01501239	[0.011-0.019] unit increase	Affymetrix [93095623] (imputed)	N
1762	chr4	154385924	154385925	rs7687559	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	4q31.3	NR	rs7687559-C	0.398128	2E-12		0.013596	[0.0098-0.0174] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
1762	chr4	154385924	154385925	rs7687559	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	4q31.3	NR	rs7687559-C	0.398047	4E-14		0.0240199	[0.018-0.03] unit decrease	NR [19129689] (imputed)	N
1762	chr4	154389617	154389617	rs5863049	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	4q31.3	KIAA0922	rs5863049-CAT	0.348034	5E-15		0.018488875	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1762	chr4	154389617	154389617	rs5863049	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	4q31.3	KIAA0922	rs5863049-CAT	0.348021	5E-18		0.020418433	[0.016-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1762	chr4	154389652	154389653	rs1836401	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	4q31.3	NR	rs1836401-G	NR	1E-9		0.0165	[0.011-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
1762	chr4	154389785	154389786	rs4558856	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	4q31.3	KIAA0922	rs4558856-G	0.347237	6E-18		0.02033736	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1762	chr4	154391439	154391440	rs10028187	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	4q31.3	KIAA0922	rs10028187-G	0.3151	1E-10		0.02516749	[0.018-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
1762	chr4	154391439	154391440	rs10028187	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	4q31.3	KIAA0922	rs10028187-G	0.3151	1E-11		0.02636767	[0.019-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
1762	chr4	154391439	154391440	rs10028187	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	4q31.3	KIAA0922	rs10028187-G	0.3151	2E-9		0.02346318	[0.016-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
1762	chr4	154397536	154397537	rs116269527	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	4q31.3		rs116269527-G	NR	3E-8		0.033	[0.021-0.045] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
1763	chr4	154416417	154416418	rs10034572	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	4q31.3	KIAA0922	rs10034572-G	0.398647	1E-12		0.016451588	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1763	chr4	154419570	154419571	rs13149756	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	4q31.3	KIAA0922	rs13149756-A	0.453071	6E-9		0.013238127	[0.0088-0.0177] unit decrease	Affymetrix [93095623] (imputed)	N
1763	chr4	154433864	154433865	rs1975233	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	4q31.3	NR	rs1975233-C	NR	4E-9		0.0146	[0.0097-0.0195] unit decrease	Affymetrix [9000000] (imputed)	N
1763	chr4	154445526	154445527	rs7686062	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	4q31.3	NR	rs7686062-?	NR	6E-15				Affymetrix [NR]	N
1763	chr4	154451677	154451678	rs6848819	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	4q31.3	NR	rs6848819-C	0.033849	2E-17		0.04348	[0.033-0.053] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1763	chr4	154456851	154456852	rs77074394	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	4q31.3	KIAA0922	rs77074394-G	0.0327690000000001	7E-27		0.0683942	[0.056-0.081] unit decrease	Affymetrix [93095623] (imputed)	N
1763	chr4	154457000	154457001	rs79403652	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q31.3	NR	rs79403652-A	0.0802317	6E-22				Affymetrix, Illumina [24588908] (imputed)	N
1763	chr4	154457518	154457519	rs2014511	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q31.3	NR	rs2014511-G	0.96444	6E-44				Affymetrix, Illumina [17210439] (imputed)	N
1763	chr4	154457518	154457519	rs2014511	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	4q31.3	NR	rs2014511-G	0.967104	7E-44		0.075334	[0.065-0.086] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1763	chr4	154457518	154457519	rs2014511	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	4q31.3	KIAA0922	rs2014511-A	0.0334	7E-9		0.05887671	[0.039-0.079] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1763	chr4	154457518	154457519	rs2014511	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	4q31.3	KIAA0922	rs2014511-A	0.0334	4E-14		0.07746759	[0.057-0.098] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1763	chr4	154460807	154460808	rs10001304	29678681	Matana A	2018-04-18	Genomics	Genome-wide meta-analysis identifies novel gender specific loci associated with thyroid antibodies level in Croatians.	Plasma anti-thyroid peroxidase levels	1,593 Croatian ancestry women, 1,025 Croatian ancestry men	NA	4q31.3	KIAA0922	rs10001304-A	NR	1E-6	(women)	0.204	[0.12-0.29] unit decrease	Illumina [5527232] (imputed)	N
1763	chr4	154461313	154461313	rs139596721	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	4q31.3	KIAA0922	rs139596721-CT	0.033434	1E-12		0.04532027	[0.033-0.058] unit decrease	Affymetrix [93095623] (imputed)	N
1763	chr4	154461313	154461313	rs139596721	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	4q31.3	KIAA0922	rs139596721-CT	0.033421	6E-11		0.041641373	[0.029-0.054] unit increase	Affymetrix [93095623] (imputed)	N
1763	chr4	154464331	154464332	rs61659583	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	4q31.3		rs61659583-C	NR	2E-11		0.023	[0.016-0.03] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1763	chr4	154478741	154478742	rs74964132	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	4q31.3	intergenic	rs74964132-G	0.007	5E-6		6.76	[2.62-17.44]	Illumina [1556551]	N
1763	chr4	154510575	154510576	rs4315759	29478026	Shahin MH	2018-02-24	J Am Heart Assoc	Genome-Wide Association Approach Identified Novel Genetic Predictors of Heart Rate Response to ?-Blockers.	Heart rate response to beta blockers (atenolol monotherapy)	228 European American hypertensive individuals, 146 African American hypertensive individuals	NA	4q31.3	NR	rs4315759-C	0.94	7E-6	(AA)	8.53	[4.96-12.1] bpm decrease	Illumina [at least 1100000] (imputed)	N
1764	chr4	154544147	154544148	rs148556115	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean reticulocyte volume	436,944 European ancestry individuals	NA	4q31.3		rs148556115-?	NR	2E-13		0.327938	[0.23-0.42] unit decrease	NR [9800000] (imputed)	N
1764	chr4	154557615	154557616	rs34343821	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	4q31.3	KIAA0922	rs34343821-T	0.013586	3E-12		0.06761697	[0.049-0.087] unit increase	Affymetrix [93095623] (imputed)	N
1764	chr4	154557615	154557616	rs34343821	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	4q31.3	KIAA0922	rs34343821-T	0.013588	1E-11		0.06583665	[0.047-0.085] unit increase	Affymetrix [93095623] (imputed)	N
1764	chr4	154557615	154557616	rs34343821	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	4q31.3	KIAA0922	rs34343821-T	0.013566	2E-11		0.065227605	[0.046-0.084] unit increase	Affymetrix [93095623] (imputed)	N
1764	chr4	154557615	154557616	rs34343821	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	4q31.3	KIAA0922	rs34343821-T	0.013564	3E-9		0.05765226	[0.039-0.077] unit increase	Affymetrix [93095623] (imputed)	N
1764	chr4	154557615	154557616	rs34343821	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	4q31.3	KIAA0922	rs34343821-T	0.013592	2E-14		0.07385632	[0.055-0.093] unit decrease	Affymetrix [93095623] (imputed)	N
1764	chr4	154557615	154557616	rs34343821	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	4q31.3	KIAA0922	rs34343821-T	0.013591	1E-25		0.10144677	[0.082-0.12] unit decrease	Affymetrix [93095623] (imputed)	N
1764	chr4	154557615	154557616	rs34343821	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	4q31.3		rs34343821-?	NR	3E-11				NR [~ 8900000] (imputed)	N
1764	chr4	154613017	154613018	rs185791183	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body fat mass	3,399 whole genome sequenced individuals, 11,802 European ancestry individuals	10,670 European ancestry individuals	4q31.3	TLR2	rs185791183-A	0.997	9E-6		0.6216	[0.35-0.9] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1764	chr4	154619186	154619187	rs115434700	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 5 levels	252 European ancestry individuals	NA	4q31.3		rs115434700-T	NR	6E-6		0.77411	[0.45-1.1] unit decrease	Illumina [NR] (imputed)	N
1764	chr4	154652027	154652028	rs981844	25350695	Postmus I	2014-10-28	Nat Commun	Pharmacogenetic meta-analysis of genome-wide association studies of LDL cholesterol response to statins.	Response to statins (LDL cholesterol change)	18,596 European ancestry individuals	23,279 European ancestry individuals	4q31.3	RNF175	rs981844-A	0.747	1E-6		0.009	[0.0051-0.0129] unit increase	Affymetrix, Illumina, Perlegen [at least 2500000] (imputed)	N
1765	chr4	154665278	154665279	rs12641631	27595289	Goyal RK	2016-09-05	Bone Marrow Transplant	Novel HLA-DP region susceptibility loci associated with severe acute GvHD.	Acute graft versus host disease in bone marrow transplantation (recipient effect)	291 European ancestry recipients with acute graft versus host disease, 288 European ancestry recipients without acute graft versus host disease	NA	4q31.3	RNF175	rs12641631-?		1E-7				Affymetrix [905761]	N
1765	chr4	154703595	154703596	rs17030434	19389651	Smith JG	2009-02-15	Heart Rhythm	Genome-wide association study of electrocardiographic conduction measures in an isolated founder population: Kosrae.	Electrocardiographic conduction measures	1,262 Kosraen individuals	NA	4q31.3	NR	rs17030434-?	0.43	5E-6	(P wave duration)			Affymetrix [338049]	N
1765	chr4	154722818	154722819	rs10023059	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	4q31.3	NR	rs10023059-C	0.4434	1E-11				NR [9056863] (imputed)	N
1765	chr4	154728005	154728006	rs62325149	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	4q31.3		rs62325149-?	NR	4E-16				NR [~ 8900000] (imputed)	N
1765	chr4	154766633	154766634	rs12509282	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	4q31.3	RNF175, SFRP2	rs12509282-?		4E-8				NR [7428630] (imputed)	N
1765	chr4	154766678	154766679	rs4377571	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	4q31.3		rs4377571-A	0.47	8E-11		6.49	z score increase	Affymetrix [9061022] (imputed)	N
1765	chr4	154767424	154767425	rs13131656	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	4q31.3	SFRP2, DCHS2	rs13131656-?	NR	8E-10		0.41	[0.27-0.55] unit decrease	Affymetrix [11100000] (imputed)	N
1765	chr4	154768010	154768011	rs994598	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	4q31.3		rs994598-C	0.48	7E-24		10.08	z score increase	Affymetrix [9061022] (imputed)	N
1765	chr4	154769596	154769597	rs7673508	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	4q31.3		rs7673508-T	NR	4E-8		0.0123	[0.008-0.0166] unit decrease	Affymetrix, Illumina [20529698] (imputed)	N
1766	chr4	154819520	154819521	rs35148853	31763980	Xiong Z	2019-11-25	Elife	Novel genetic loci affecting facial shape variation in humans.	Facial morphology	10,115 European ancestry individuals	NA	4q31.3	SFRP2	rs35148853-G	0.12	8E-9	(left alare-labiale superius distance)	0.124	NR unit decrease	Illumina [7029494] (imputed)	N
1766	chr4	154824680	154824681	rs6535972	31763980	Xiong Z	2019-11-25	Elife	Novel genetic loci affecting facial shape variation in humans.	Facial morphology	10,115 European ancestry individuals	NA	4q31.3	SFRP2	rs6535972-C	0.18	4E-12	(left endocanthion-left alare distance)	0.12	NR unit increase	Illumina [7029494] (imputed)	N
1766	chr4	154824680	154824681	rs6535972	31763980	Xiong Z	2019-11-25	Elife	Novel genetic loci affecting facial shape variation in humans.	Facial morphology	10,115 European ancestry individuals	NA	4q31.3	SFRP2	rs6535972-C	0.18	2E-9	(left exocanthion-left alare distance)	0.106	NR unit increase	Illumina [7029494] (imputed)	N
1766	chr4	154828365	154828366	rs9995821	34411106	Liu C	2021-08-19	PLoS Genet	Genome scans of facial features in East Africans and cross-population comparisons reveal novel associations.	Facial morphology (segment 27)	2,595 Tanzanian ancestry individuals	NA	4q31.3		rs9995821-?	NR	3E-22				Illumina [NR] (imputed)	N
1766	chr4	154828365	154828366	rs9995821	33547071	Bonfante B	2021-02-05	Sci Adv	A GWAS in Latin Americans identifies novel face shape loci, implicating VPS13B and a Denisovan introgressed region in facial variation.	Facial morphology (nostril size)	6,169 Latin American individuals	NA	4q31.3		rs9995821-?	NR	2E-9				Illumina [8703729] (imputed)	N
1766	chr4	154828365	154828366	rs9995821	33547071	Bonfante B	2021-02-05	Sci Adv	A GWAS in Latin Americans identifies novel face shape loci, implicating VPS13B and a Denisovan introgressed region in facial variation.	Facial morphology (nose roundness 3)	6,169 Latin American individuals	NA	4q31.3		rs9995821-?	NR	2E-10				Illumina [8703729] (imputed)	N
1766	chr4	154828365	154828366	rs9995821	33547071	Bonfante B	2021-02-05	Sci Adv	A GWAS in Latin Americans identifies novel face shape loci, implicating VPS13B and a Denisovan introgressed region in facial variation.	Facial morphology (nose roundness 1)	6,169 Latin American individuals	NA	4q31.3		rs9995821-?	NR	2E-12				Illumina [8703729] (imputed)	N
1766	chr4	154828365	154828366	rs9995821	33547071	Bonfante B	2021-02-05	Sci Adv	A GWAS in Latin Americans identifies novel face shape loci, implicating VPS13B and a Denisovan introgressed region in facial variation.	Facial morphology (nose height)	6,169 Latin American individuals	NA	4q31.3		rs9995821-?	NR	6E-7				Illumina [8703729] (imputed)	N
1766	chr4	154828365	154828366	rs9995821	33547071	Bonfante B	2021-02-05	Sci Adv	A GWAS in Latin Americans identifies novel face shape loci, implicating VPS13B and a Denisovan introgressed region in facial variation.	Facial morphology (columella inclination)	6,169 Latin American individuals	NA	4q31.3		rs9995821-?	NR	3E-7				Illumina [8703729] (imputed)	N
1766	chr4	154828365	154828366	rs9995821	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 2)	4,680 European ancestry individuals	3,566 European ancestry individuals	4q31.3		rs9995821-C	0.194978632	6E-65				Illumina [7417619] (imputed)	N
1766	chr4	154828365	154828366	rs9995821	31763980	Xiong Z	2019-11-25	Elife	Novel genetic loci affecting facial shape variation in humans.	Facial morphology	10,115 European ancestry individuals	NA	4q31.3	SFRP2	rs9995821-C	0.18	2E-10	(right endocanthion-right alare distance)	0.118	NR unit increase	Illumina [7029494] (imputed)	N
1766	chr4	154828365	154828366	rs9995821	29459680	Claes P	2018-02-19	Nat Genet	Genome-wide mapping of global-to-local genetic effects on human facial shape.	Facial morphology traits (63 three-dimensional facial segments)	2,329 European ancestry individuals	1,719 European ancestry individuals	4q31.3	DCHS2	rs9995821-?	NR	4E-18	(facial module 45)			Illumina [9478608] (imputed)	N
1766	chr4	154828365	154828366	rs9995821	27193062	Adhikari K	2016-05-19	Nat Commun	A genome-wide association scan implicates DCHS2, RUNX2, GLI3, PAX1 and EDAR in human facial variation.	facial morphology traits (multivariate analysis)	5,958 Latin American ancestry individuals.	NA	4q31.3	DCHS2	rs9995821-?		2E-7				Illumina [9117642] (imputed)	N
1766	chr4	154831898	154831899	rs2045323	33593615	Huang Y	2020-11-09	J Genet Genomics	A genome-wide association study of facial morphology identifies novel genetic loci in Han Chinese.	Nose morphology	2,659 Han Chinese ancestry individuals	NA	4q31.3	DCHS2, SFRP2	rs2045323-?		2E-17				Illumina [4757938] (imputed)	N
1766	chr4	154831898	154831899	rs2045323	27193062	Adhikari K	2016-05-19	Nat Commun	A genome-wide association scan implicates DCHS2, RUNX2, GLI3, PAX1 and EDAR in human facial variation.	middle facial morphology traits (quantitative measurement)	2955 Latin American ancestry individuals.	NA	4q31.3	DCHS2	rs2045323-A	NR	3E-9	(Columella Inclination)	0.018	NR increase	Illumina [9117642] (imputed)	N
1766	chr4	154831898	154831899	rs2045323	27193062	Adhikari K	2016-05-19	Nat Commun	A genome-wide association scan implicates DCHS2, RUNX2, GLI3, PAX1 and EDAR in human facial variation.	middle facial morphology traits (quantitative measurement)	2955 Latin American ancestry individuals.	NA	4q31.3	DCHS2	rs2045323-A	NR	2E-8	(Nose tip angle)	0.016	NR increase	Illumina [9117642] (imputed)	N
1766	chr4	154831898	154831899	rs2045323	27193062	Adhikari K	2016-05-19	Nat Commun	A genome-wide association scan implicates DCHS2, RUNX2, GLI3, PAX1 and EDAR in human facial variation.	middle facial morphology traits (quantitative measurement)	2955 Latin American ancestry individuals.	NA	4q31.3	DCHS2	rs2045323-A	NR	1E-8	(Nose protrusion)	5.9E-4	NR decrease	Illumina [9117642] (imputed)	N
1766	chr4	154863424	154863425	rs4315762	29921221	Cha S	2018-06-19	BMC Genomics	Identification of five novel genetic loci related to facial morphology by genome-wide association studies.	Nose morphology	5,643 Korean ancestry individuals	up to 1,940 Korean ancestry individuals	4q31.3	SFRP2, DCHS2	rs4315762-G	0.26	7E-6	(Subnasal width)	0.214	[NR] unit decrease	Affymetrix [311944]	N
1766	chr4	154863424	154863425	rs4315762	29921221	Cha S	2018-06-19	BMC Genomics	Identification of five novel genetic loci related to facial morphology by genome-wide association studies.	Nose morphology	5,643 Korean ancestry individuals	up to 1,940 Korean ancestry individuals	4q31.3	DCHS2	rs4315762-G	NR	5E-6	(Subnasal width)	0.247	[0.14-0.35] unit decrease	Affymetrix [311944]	N
1766	chr4	154864749	154864750	rs13135284	23725790	Renteria ME	2013-06-03	Twin Res Hum Genet	GWAS of DNA methylation variation within imprinting control regions suggests parent-of-origin association.	DNA methylation (parent-of-origin)	1,024 European ancestry individuals	NA	4q31.3	intergenic	rs13135284-C	0.26	5E-8	(NESPAS CpG02)			Illumina [515966]	N
1767	chr4	154947290	154947291	rs6839945	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Hepatitis A	2,442 European ancestry cases, 217,137 European ancestry controls	NA	4q31.3	NR	rs6839945-?	NR	3E-6		0.2005	[0.11-0.29] unit increase	Illumina [at least 560000] (imputed)	N
1767	chr4	154970396	154970397	rs11737164	32439431	Simard M	2020-05-19	J Allergy Clin Immunol	Polygenic risk score for atopic dermatitis in the Canadian population.	Atopic dermatitis (moderate to severe)	222 South East Asian ancestry, East Asian ancestry, South Asian ancestry, African American or Afro-Caribbean, European ancestry, Greater Middle Eastern (Middle Eastern, North African or Persian) cases, 2,466 Greater Middle Eastern (Middle Eastern, North African or Persian), Hispanic or Latin American, NR moderate to severe atopic dermatitis cases, 2,466 South East Asian ancestry, East Asian ancestry, South Asian ancestry, African American or Afro-Caribbean, European ancestry, Greater Middle Eastern (Middle Eastern, North African or Persian) cases, 2,466 Greater Middle Eastern (Middle Eastern, North African or Persian), Hispanic or Latin American, NR controls without moderate to severe atopic dermatitis	NA	4q31.3		rs11737164-A	NR	4E-11	(general)			Illumina [5894709] (imputed)	N
1767	chr4	154995462	154995463	rs2404916	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	4q31.3	DCHS2	rs2404916-G	0.334	9E-6	(Hcy )	0.02	[NR] umol/L increase	Illumina [899892]	N
1768	chr4	155103452	155103453	rs4235235	29489655	Liu X	2018-03-01	Medicine (Baltimore)	Genome-wide association study of maternal genetic effects and parent-of-origin effects on food allergy.	Food allergy (maternal genetic effects)	588 European ancestry complete and incomplete trios	NA	4q31.3	LOC101927947	rs4235235-?	NR	5E-8				Illumina [NR]	N
1768	chr4	155132706	155132707	rs11099942	28060188	Hamet P	2017-01-16	J Hypertens	PROX1 gene CC genotype as a major determinant of early onset of type 2 diabetes in slavic study participants from Action in Diabetes and Vascular Disease: Preterax and Diamicron MR Controlled Evaluation study.	Type 2 diabetes (age of onset)	2,307 Celtic ancestry individuals, 1,102 Slavic ancestry individuals	NA	4q31.3	SFRP2, DCHS2	rs11099942-?	NR	4E-6	(Celtic)			Affymetrix [5045527] (imputed)	N
1768	chr4	155155317	155155318	rs17031277	30172743	Liang X	2018-08-30	Bone	Assessing the genetic correlations between early growth parameters and bone mineral density: A polygenic risk score analysis.	Bone mineral density (spine)	2,286 European ancestry individuals	NA	4q31.3	SFRP2	rs17031277-?	NR	1E-6				Affymetrix [753382]	N
1768	chr4	155181995	155181996	rs146577159	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	UBA737 abundance in stool	5,959 Finnish ancestry individuals	NA	4q31.3		rs146577159-T	0.0177789	5E-8		0.234463	[0.15-0.32] unit increase	Illumina [7980478] (imputed)	N
1769	chr4	155243603	155243604	rs1352714	31050781	Zhao SX	2019-05-03	JAMA Netw Open	Assessment of Molecular Subtypes in Thyrotoxic Periodic Paralysis and Graves Disease Among Chinese Han Adults: A Population-Based Genome-Wide Association Study.	Thyrotoxic hypokalemic periodic paralysis and Graves disease	171 Han Chinese ancestry cases, 2,160 Han Chinese ancestry controls	362 Han Chinese ancestry cases, 1,089 Han Chinese ancestry controls	4q31.3	DCHS2	rs1352714-T	0.14	1E-8		1.58	[1.35-1.85]	Illumina [2752055] (imputed)	N
1769	chr4	155288189	155288190	rs2130709	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or recurrent major depressive disorder x sex interaction	31,567 European ancestry schizophrenia cases,19,924 European ancestry bipolar disorder cases, 5,314 European ancestry recurrent major depressive disorder cases, 78,190 European ancestry controls	NA	4q31.3	DCHS2	rs2130709-A	0.6005	1E-5		0.2197	[0.12-0.32] unit increase	NR [NR] (imputed)	N
1769	chr4	155288189	155288190	rs2130709	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or recurrent major depressive disorder	11,361 European ancestry schizophrenia female cases, 20,206 European ancestry schizophrenia male cases, 11,897 European ancestry bipolar disorder female cases, 8,027 European ancestry bipolar disorder male cases, 3,833 European ancestry recurrent major depressive disorder female cases, 1,481 recurrent major depressive disorder male cases, 38,937 European ancestry female controls, 29,714 European ancestry male controls	NA	4q31.3	NR	rs2130709-A	0.6005	1E-6	(male)	0.184	[0.11-0.26] unit decrease	NR [NR] (imputed)	N
1769	chr4	155288189	155288190	rs2130709	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or major depressive disorder	11,361 European ancestry schizophrenia female cases, 20,206 European ancestry schizophrenia male cases, 11,897 European ancestry bipolar disorder female cases, 8,027 European ancestry bipolar disorder male cases, 10,865 European ancestry major depressive disorder female cases, 5,105 major depressive disorder male cases, 46,410 European ancestry female controls, 46,615 European ancestry male controls	NA	4q31.3	DCHS2	rs2130709-A	NR	6E-6	(male)	0.1655	[0.094-0.237] unit decrease	NR [NR] (imputed)	N
1769	chr4	155301058	155301059	rs12651106	21757653	Lovely RS	2011-07-14	Arterioscler Thromb Vasc Biol	Assessment of genetic determinants of the association of ?' fibrinogen in relation to cardiovascular disease.	Fibrinogen	3,042 individuals	NA	4q31.3	DCHS2	rs12651106-A	0.17	2E-12		0.14	[0.10-0.18] g/L decrease	Affymetrix [~ 2500000] (imputed)	N
1769	chr4	155301834	155301835	rs190775685	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Fatty acid-binding protein, adipocyte levels	21,758 European ancestry individuals	9,173 individuals	4q31.3		rs190775685-A	0.99	8E-11		1.7478	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1769	chr4	155307036	155307037	rs12651672	34838041	Naderi E	2021-11-27	J Transl Med	A two-stage genome-wide association study of radiation-induced acute toxicity in head and neck cancer.	radiation-induced toxicity (physician-rated acute xerostomia)	869 Dutch ancestry individuals	246 Dutch ancestry individuals	4q31.3		rs12651672-T	NR	8E-6		0.09945459	[0.055-0.144] increase	Illumina [6334277] (imputed)	N
1769	chr4	155316121	155316122	rs902464	22610502	Kennedy RB	2012-05-19	Hum Genet	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IL-1beta)	Up to 512 European ancestry individuals, up to 199 African American individuals	NA	4q31.3	DCHS2	rs902464-A		3E-7	(EA)			Illumina [NR]	N
1770	chr4	155347392	155347393	rs1466662	22005931	Kamboh MI	2011-10-18	Mol Psychiatry	Genome-wide association analysis of age-at-onset in Alzheimer's disease.	Alzheimer's disease (age of onset)	1,190 European ancestry cases, 1,032 cases	NA	4q31.3	DCHS2	rs1466662-?	NR	5E-7		0.9595	unit decrease	Illumina [2543888] (imputed)	N
1770	chr4	155362719	155362720	rs11356559	29855589	Chernus J	2018-05-31	Sci Rep	GWAS reveals loci associated with velopharyngeal dysfunction.	Velopharyngeal dysfunction	54 Hispanic or Latin American and unknown ancestry cases, 922 Hispanic or Latin American and unknown ancestry controls	NA	4q31.3	NR	rs11356559-?	NR	5E-6		0.11708651	[NR] unit decrease	Illumina [at least 269494] (imputed)	N
1770	chr4	155389246	155389247	rs17031671	20639394	Kang TW	2010-07-16	Hum Mol Genet	Genome-wide association of serum bilirubin levels in Korean population.	Bilirubin levels	8,841 Korean ancestry individuals	1,096 Korean ancestry individuals	4q31.3	DCHS2	rs17031671-?	0.017	6E-11		0.116	[NR] bilirubin level decrease	Affymetrix [1227049] (imputed)	N
1770	chr4	155397516	155397517	rs4696584	26105758	Adhikari K	2015-06-24	Nat Commun	A genome-wide association study identifies multiple loci for variation in human ear morphology.	Folding of antihelix	4,919 Latin American individuals	NA	4q31.3	NR	rs4696584-?	NR	6E-7	(FDR adjusted)			Illumina [671038]	N
1770	chr4	155418646	155418647	rs4696594	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 157,769 European ancestry controls	NA	4q31.3	NR	rs4696594-?	NR	2E-10		0.0746	[0.052-0.098] unit decrease	Affymetrix, Illumina [12923718] (imputed)	N
1770	chr4	155448757	155448758	rs116692022	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SYK	5,342 Icelandic ancestry individuals	NA	4q31.3		rs116692022-G	0.01574	5E-14		0.511013	[0.38-0.64] unit increase	Illumina [7506463] (imputed)	N
1770	chr4	155448757	155448758	rs116692022	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	4q31.3	NR	rs116692022-G	NR	2E-13		0.0801	[0.059-0.101] unit increase	Affymetrix [9000000] (imputed)	N
1770	chr4	155448757	155448758	rs116692022	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	4q31.3	NR	rs116692022-G	NR	2E-12		0.0767	[0.055-0.098] unit increase	Affymetrix [9000000] (imputed)	N
1770	chr4	155448757	155448758	rs116692022	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	4q31.3	NR	rs116692022-G	NR	3E-9		0.0645	[0.043-0.086] unit increase	Affymetrix [9000000] (imputed)	N
1770	chr4	155449063	155449064	rs13123551	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Ischemic stroke	11,929 European ancestry cases, 472,192 European ancestry controls, 22,664 East Asian ancestry cases, 152,022 East Asian ancestry controls	NA	4q31.3		rs13123551-A	NR	1E-8		0.0552	[0.036-0.074] unit increase	Affymetrix, Illumina [25844498] (imputed)	N
1770	chr4	155449332	155449333	rs72679178	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ALDH1A3	5,358 Icelandic ancestry individuals	NA	4q31.3		rs72679178-G	0.1612	3E-12		0.175863	[0.13-0.23] unit decrease	Illumina [7506463] (imputed)	N
1771	chr4	155451758	155451759	rs12511469	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q31.3	FGG	rs12511469-T	0.7784375	8E-6	(FGG, 4989_7_1)	0.12857224	[0.072-0.185] unit increase	Illumina [> 1000000] (imputed)	N
1771	chr4	155451758	155451759	rs12511469	21757653	Lovely RS	2011-07-14	Arterioscler Thromb Vasc Biol	Assessment of genetic determinants of the association of ?' fibrinogen in relation to cardiovascular disease.	Fibrinogen	3,042 individuals	NA	4q31.3	PLRG1	rs12511469-A	0.19	2E-36		0.18	[0.15-0.21] g/L decrease	Affymetrix [~ 2500000] (imputed)	N
1771	chr4	155457529	155457530	rs7685666	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LGALS7	5,347 Icelandic ancestry individuals	NA	4q31.3		rs7685666-A	0.2941	1E-12		0.138353	[0.1-0.18] unit decrease	Illumina [7506463] (imputed)	N
1771	chr4	155475248	155475249	rs72679199	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Fibrinogen levels	18,348 Japanese ancestry individuals	NA	4q31.3	FGB, PLRG1	rs72679199-?	NR	1E-11		0.105	[0.076-0.134] unit increase	Illumina [6108953] (imputed)	N
1771	chr4	155476626	155476627	rs114756490	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	4q31.3	intergenic	rs114756490-?	NR	1E-11		0.0783	[0.058-0.099] unit increase	Affymetrix [5701386] (imputed)	N
1771	chr4	155479064	155479065	rs140473879	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	4q31.3		rs140473879-C	0.996147	2E-8		0.193745	[0.13-0.26] unit decrease	NR [11722792] (imputed)	N
1771	chr4	155479260	155479261	rs72681211	28107422	de Vries PS	2017-01-20	PLoS One	Comparison of HapMap and 1000 Genomes Reference Panels in a Large-Scale Genome-Wide Association Study.	Fibrinogen levels	91,953 European ancestry individuals (imputed to 1000 Genomes)		4q31.3	PLRG1, FGB	rs72681211-?	NR	1E-142		0.0313	unit increase	Affymetrix, Illumina [10883314] (imputed)	N
1771	chr4	155481288	155481289	rs4508864	23144326	Kim DK	2012-11-09	Am J Respir Crit Care Med	Genome-wide association analysis of blood biomarkers in chronic obstructive pulmonary disease.	Chronic obstructive pulmonary disease-related biomarkers	Up to 1,951 European ancestry smokers	NA	4q31.3	FGB	rs4508864-T	0.22	6E-6	(FG)			Illumina [588352]	N
1771	chr4	155481540	155481541	rs7439150	26561523	de Vries PS	2015-11-10	Hum Mol Genet	A meta-analysis of 120 246 individuals identifies 18 new loci for fibrinogen concentration.	Fibrinogen levels	120,246 European ancestry individuals	NA	4q31.3	FGB	rs7439150-A	0.2	1E-180		0.0313	NR unit increase	Affymetrix, Illumina [~ 10700000] (imputed)	N
1771	chr4	155482742	155482743	rs1800789	23969696	Sabater-Lleal M	2013-08-22	Circulation	Multiethnic meta-analysis of genome-wide association studies in >100 000 subjects identifies 23 fibrinogen-associated Loci but no strong evidence of a causal association between circulating fibrinogen and cardiovascular disease.	Fibrinogen	91,323 European ancestry individuals	8,423 African American individuals, 1,447 Hispanic individuals	4q31.3	FGB	rs1800789-A	0.21	2E-127		0.031	[0.029-0.033] unit increase	Affymetrix, Illumina [2515567] (imputed)	N
1771	chr4	155482742	155482743	rs1800789	20031576	Dehghan A	2009-04-01	Circ Cardiovasc Genet	Association of novel genetic Loci with circulating fibrinogen levels: a genome-wide association study in 6 population-based cohorts.	Fibrinogen	22,096 European ancestry individuals	17,686 European ancestry female individuals	4q31.3	FGB	rs1800789-A	0.22	2E-30		0.09	[0.07-0.11] g/L increase	Affymetrix, Illumina [~ 2661766] (imputed)	N
1771	chr4	155483913	155483914	rs1800788	21757653	Lovely RS	2011-07-14	Arterioscler Thromb Vasc Biol	Assessment of genetic determinants of the association of ?' fibrinogen in relation to cardiovascular disease.	Fibrinogen	3,042 individuals	NA	4q31.3	FGB	rs1800788-T	0.20	1E-39		0.19	[0.16-0.22] g/L decrease	Affymetrix [~ 2500000] (imputed)	N
1771	chr4	155486380	155486381	rs2227401	28107422	de Vries PS	2017-01-20	PLoS One	Comparison of HapMap and 1000 Genomes Reference Panels in a Large-Scale Genome-Wide Association Study.	Fibrinogen levels	91,953 European ancestry individuals (imputed to HapMap)		4q31.3	FGB	rs2227401-?	NR	5E-134		0.0311	unit increase	Affymetrix, Illumina [2749429] (imputed)	N
1771	chr4	155488300	155488301	rs150768229	26561523	de Vries PS	2015-11-10	Hum Mol Genet	A meta-analysis of 120 246 individuals identifies 18 new loci for fibrinogen concentration.	Fibrinogen levels	120,246 European ancestry individuals	NA	4q31.3	FGB	rs150768229-C	0.009	6E-12		0.0458	NR unit decrease	Affymetrix, Illumina [~ 10700000] (imputed)	N
1771	chr4	155488820	155488821	rs6056	33095540	Sherman BT	2020-10-20	AIDS	Genome-wide association study of high-sensitivity C-reactive protein, D-dimer and Interleukin-6 levels in multi-ethnic HIV+ cohorts.	D-dimer levels in HIV infection	4,675 European ancestry individuals, 1,732 African ancestry individuals, 645 Admixed American individuals	NA	4q31.3	FGB	rs6056-T	0.163	6E-9		0.082	[0.055-0.109] unit decrease	Affymetrix [up to 12642786] (imputed)	N
1771	chr4	155488820	155488821	rs6056	20031577	Danik JS	2009-04-01	Circ Cardiovasc Genet	Novel loci, including those related to Crohn disease, psoriasis, and inflammation, identified in a genome-wide association study of fibrinogen in 17 686 women: the Women's Genome Health Study.	Fibrinogen	17,686 European ancestry female individuals	NA	4q31.3	FGB, FGA, FGG	rs6056-A	0.18	8E-39		12.94	[NR] mg/dl increase	Illumina [337343]	N
1771	chr4	155489607	155489608	rs6054	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	4q31.3		rs6054-C	0.994256	5E-11		0.18498	[0.13-0.24] unit increase	NR [11722792] (imputed)	N
1771	chr4	155489607	155489608	rs6054	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Linoleic acid levels	115,006 European ancestry individuals	NA	4q31.3		rs6054-C	0.994252	4E-8		0.152392	[0.098-0.207] unit decrease	NR [11722792] (imputed)	N
1771	chr4	155489607	155489608	rs6054	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycoprotein acetyls levels	115,082 European ancestry individuals	NA	4q31.3		rs6054-C	0.994256	2E-8		0.156292	[0.1-0.21] unit decrease	NR [11722792] (imputed)	N
1771	chr4	155489607	155489608	rs6054	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	4q31.3		rs6054-C	0.994256	2E-8		0.15891	[0.1-0.21] unit decrease	NR [11722792] (imputed)	N
1771	chr4	155489607	155489608	rs6054	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	4q31.3		rs6054-T	NR	4E-11		0.1002	[0.071-0.13] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
1771	chr4	155489607	155489608	rs6054	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	4q31.3		rs6054-T	NR	2E-10		0.0956	[0.066-0.125] unit increase	Affymetrix, Illumina [20536134] (imputed)	N
1771	chr4	155489607	155489608	rs6054	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	4q31.3		rs6054-T	NR	5E-8		0.0856	[0.055-0.116] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
1771	chr4	155489607	155489608	rs6054	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	4q31.3		rs6054-T	NR	9E-9		0.0891	[0.059-0.119] unit increase	Affymetrix, Illumina [20521447] (imputed)	N
1771	chr4	155489607	155489608	rs6054	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	White blood cell count	444,734 European ancestry individuals	NA	4q31.3		rs6054-?	NR	2E-9		0.0799288	[0.054-0.106] unit increase	NR [9800000] (imputed)	N
1771	chr4	155489607	155489608	rs6054	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Triglyceride levels	437,532 European ancestry individuals	NA	4q31.3		rs6054-?	NR	5E-15		0.103236	[0.077-0.129] unit increase	NR [9800000] (imputed)	N
1771	chr4	155489607	155489608	rs6054	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Total cholesterol levels	437,878 European ancestry individuals	NA	4q31.3		rs6054-?	NR	4E-12		0.0930834	[0.066-0.12] unit increase	NR [9800000] (imputed)	N
1771	chr4	155489607	155489608	rs6054	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Neutrophil count	443,782 European ancestry individuals	NA	4q31.3		rs6054-?	NR	5E-10		0.0821798	[0.056-0.109] unit increase	NR [9800000] (imputed)	N
1771	chr4	155489607	155489608	rs6054	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Insulin-like growth factor 1 levels	435,516 European ancestry individuals	NA	4q31.3		rs6054-?	NR	2E-11		0.0842539	[0.058-0.11] unit increase	NR [9800000] (imputed)	N
1771	chr4	155489607	155489608	rs6054	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Direct low density lipoprotein cholesterol levels	437,068 European ancestry individuals	NA	4q31.3		rs6054-?	NR	8E-11		0.0868096	[0.06-0.114] unit increase	NR [9800000] (imputed)	N
1771	chr4	155489607	155489608	rs6054	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Apolipoprotein B levels	435,744 European ancestry individuals	NA	4q31.3		rs6054-?	NR	1E-9		0.0791183	[0.053-0.106] unit increase	NR [9800000] (imputed)	N
1771	chr4	155489607	155489608	rs6054	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	4q31.3	NR	rs6054-C	0.994312	6E-26		0.138318	[0.11-0.16] unit decrease	Affymetrix [15000001]	N
1771	chr4	155489607	155489608	rs6054	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	Total cholesterol levels	up to 237,050 European ancestry individuals, up to 16,935 African ancestry individuals, up to 30,468 South Asian ancestry individuals, up to 8,287 East Asian ancestry individuals, 5,084 Hispanic individuals	up to 286,268 European and unknown ancestry individuals	4q31.3	NR	rs6054-T	NR	3E-17		0.13406506	[0.1-0.17] unit increase	Illumina [242289]	N
1771	chr4	155489607	155489608	rs6054	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	Total cholesterol levels	up to 237,050 European ancestry individuals	NA	4q31.3	NR	rs6054-T	0.0045	1E-11		0.15	unit increase	Illumina [242289]	N
1771	chr4	155489607	155489608	rs6054	26561523	de Vries PS	2015-11-10	Hum Mol Genet	A meta-analysis of 120 246 individuals identifies 18 new loci for fibrinogen concentration.	Fibrinogen levels	120,246 European ancestry individuals	NA	4q31.3	FGB	rs6054-T	0.005	2E-53		0.1228	NR unit decrease	Affymetrix, Illumina [~ 10700000] (imputed)	N
1771	chr4	155501187	155501188	rs6825454	33592630	Herrera-Rivero M	2021-02-16	Thromb Haemost	Single- and Multimarker Genome-Wide Scans Evidence Novel Genetic Risk Modifiers for Venous Thromboembolism.	Venous thromboembolism	964 European ancestry cases, 899 European ancestry controls	NA	4q31.3	FGA	rs6825454-C	NR	9E-10		1.615	[1.385-1.882]	Illumina [484621]	N
1771	chr4	155501187	155501188	rs6825454	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Stroke	40,585 European ancestry cases, 406,111 European ancestry controls, 17,369 East Asian ancestry cases, 28,195 East Asian ancestry controls, 2,437 South Asian ancestry cases, 6,707 South Asian ancestry controls, 5,541 African American cases, 15,154 African American controls, 365 Asian ancestry cases, 333 Asian ancestry controls, 865 Latin American cases, 692 Latin American controls	NA	4q31.3	FGA	rs6825454-?	NR	3E-9				NR [~ 8000000] (imputed)	N
1771	chr4	155501187	155501188	rs6825454	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Stroke	40,585 European ancestry cases, 406,111 European ancestry controls	NA	4q31.3	FGA	rs6825454-?	NR	2E-7				NR [~ 8000000] (imputed)	N
1771	chr4	155501187	155501188	rs6825454	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Ischemic stroke	34,217 European ancestry cases, 406,111 European ancestry controls, 17,369 East Asian ancestry cases, 28,195 East Asian ancestry controls, 2,437 South Asian ancestry cases, 6,707 South Asian ancestry controls, 5,541 African American cases, 15,146 African American controls, 222 Asian ancestry cases, 333 Asian ancestry controls, 555 Latin American cases, 692 Latin American controls	NA	4q31.3	FGA	rs6825454-?	NR	7E-10				NR [~ 8000000] (imputed)	N
1771	chr4	155501187	155501188	rs6825454	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Ischemic stroke	34,217 European ancestry cases, 406,111 European ancestry controls	NA	4q31.3	FGA, FGB	rs6825454-?	NR	9E-8				NR [~ 8000000] (imputed)	N
1771	chr4	155507589	155507590	rs6050	34777790	A Christensen M	2021-10-13	Ann Med Surg (Lond)	An assessment of the effect of the genotype on postoperative venous thromboembolism risk in 140,831 surgical patients.	Venous thromboembolism	6,260 cases, 355,414 controls	NA	4q31.3		rs6050-?	NR	7E-26				Affymetrix [254068]	N
1771	chr4	155507589	155507590	rs6050	21757653	Lovely RS	2011-07-14	Arterioscler Thromb Vasc Biol	Assessment of genetic determinants of the association of ?' fibrinogen in relation to cardiovascular disease.	Fibrinogen	3,042 individuals	NA	4q31.3	FGA	rs6050-C	0.24	9E-90		0.26	[0.23-0.29] g/L decrease	Affymetrix [~ 2500000] (imputed)	N
1771	chr4	155513865	155513866	rs2070006	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	4q31.3		rs2070006-?	NR	7E-8				NR [~ 8900000] (imputed)	N
1771	chr4	155514878	155514879	rs13109457	21502573	Smith NL	2011-04-21	Circulation	Genetic predictors of fibrin D-dimer levels in healthy adults.	D-dimer levels	21,052 European ancestry individuals	NA	4q31.3	FGA, FGG	rs13109457-A	0.25	3E-18		6.3	[2.3-10.4] % increase	Affymetrix, Illumina [2522393] (imputed)	N
1771	chr4	155520929	155520930	rs7659024	21980494	Germain M	2011-09-27	PLoS One	Genetics of venous thrombosis: insights from a new genome wide association study.	Venous thromboembolism	1,542 European ancestry cases, 1,110 European ancestry controls	NA	4q31.3	FGA, FGG	rs7659024-A	0.25	2E-13		1.53	[NR]	Illumina [481002]	N
1771	chr4	155525275	155525276	rs2066865	34777790	A Christensen M	2021-10-13	Ann Med Surg (Lond)	An assessment of the effect of the genotype on postoperative venous thromboembolism risk in 140,831 surgical patients.	Venous thromboembolism	6,260 cases, 355,414 controls	NA	4q32.1		rs2066865-?	NR	7E-27				Affymetrix [254068]	N
1771	chr4	155525275	155525276	rs2066865	31676865	Klarin D	2019-11-01	Nat Genet	Genome-wide association analysis of venous thromboembolism identifies new risk loci and genetic overlap with arterial vascular disease.	Venous thromboembolism	23,151 European ancestry cases, 553,439 European ancestry controls, 2,261 African American cases, 49,400 African American controls, 654 Hispanic cases, 21,214 Hispanic controls	17,672 cases, 167,295 controls	4q32.1	FGG	rs2066865-A	0.2465	2E-88		1.220304	[1.20-1.24]	Affymetrix [up to 34000000] (imputed)	N
1771	chr4	155525275	155525276	rs2066865	28373160	Klarin D	2017-04-01	Circ Cardiovasc Genet	Genetic Analysis of Venous Thromboembolism in UK Biobank Identifies the ZFPM2 Locus and Implicates Obesity as a Causal Risk Factor.	Venous thromboembolism	3,290 European ancestry cases, 116,868 European ancestry controls	65,734 cases and controls (see Germain, 2015)	4q32.1	FGG	rs2066865-A	0.24	3E-11		1.21	[1.15-1.29]	Affymetrix [9155762] (imputed)	N
1771	chr4	155525275	155525276	rs2066865	25772935	Germain M	2015-03-12	Am J Hum Genet	Meta-analysis of 65,734 individuals identifies TSPAN15 and SLC44A2 as two susceptibility loci for venous thromboembolism.	Venous thromboembolism	7,507 European ancestry cases, 52,632 European ancestry controls	3,009 European ancestry cases, 2,586 European ancestry controls	4q32.1	FGG	rs2066865-A	0.244	1E-16		1.24	[1.18-1.31]	Affymetrix, Illumina [6751884] (imputed)	N
1771	chr4	155525694	155525695	rs2066864	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 799 African American cases, 157,769 European ancestry controls, 14,353 African American controls	NA	4q32.1	FGG	rs2066864-A	NR	2E-59		1.2	[1.17-1.22]	Affymetrix, Illumina [12923718] (imputed)	N
1771	chr4	155525694	155525695	rs2066864	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 157,769 European ancestry controls	NA	4q32.1	NR	rs2066864-?	NR	1E-57		0.1813	[0.16-0.2] unit increase	Affymetrix, Illumina [12923718] (imputed)	N
1771	chr4	155527435	155527436	rs2066861	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Prothrombin time	58,110 Japanese ancestry individuals	NA	4q32.1	FGG	rs2066861-?	NR	2E-20		0.05413	[0.043-0.066] unit decrease novel	Illumina [6108953] (imputed)	N
1771	chr4	155533034	155533035	rs148685782	30837465	Wittemans LBL	2019-03-05	Nat Commun	Assessing the causal association of glycine with risk of cardio-metabolic diseases.	Glycine levels	80,003 European ancestry individuals	NA	4q32.1	FGG	rs148685782-G	0.996	2E-10		0.309	[0.21-0.41] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1771	chr4	155533034	155533035	rs148685782	26561523	de Vries PS	2015-11-10	Hum Mol Genet	A meta-analysis of 120 246 individuals identifies 18 new loci for fibrinogen concentration.	Fibrinogen levels	120,246 European ancestry individuals	NA	4q32.1	FGG	rs148685782-C	0.005	1E-87		0.2239	NR unit decrease	Affymetrix, Illumina [~ 10700000] (imputed)	N
1771	chr4	155537320	155537321	rs12644950	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Activated partial thromboplastin time	37,767 Japanese ancestry individuals	NA	4q32.1	FGG, LRAT	rs12644950-?	NR	4E-16		0.05896	[0.045-0.073] unit decrease novel	Illumina [6108953] (imputed)	N
1771	chr4	155542247	155542248	rs7681423	30659681	Lindstrom S	2019-01-19	Genet Epidemiol	A large-scale exome array analysis of venous thromboembolism.	Venous thromboembolism	8,332 European ancestry cases, 16,087 European ancestry controls, 382 African-American cases, 1,476 African-American controls	NA	4q32.1	FGA, FGG	rs7681423-?	0.247	5E-24		1.29	[1.23-1.35]	Illumina [64794]	N
1771	chr4	155542247	155542248	rs7681423	21757653	Lovely RS	2011-07-14	Arterioscler Thromb Vasc Biol	Assessment of genetic determinants of the association of ?' fibrinogen in relation to cardiovascular disease.	Fibrinogen	3,042 individuals	NA	4q32.1	FGG	rs7681423-T	0.23	1E-109		0.29	[0.26-0.32] g/L decrease	Affymetrix [~ 2500000] (imputed)	N
1771	chr4	155543368	155543369	rs6536024	23650146	Tang W	2013-05-05	Genet Epidemiol	A genome-wide association study for venous thromboembolism: the extended cohorts for heart and aging research in genomic epidemiology (CHARGE) consortium.	Venous thromboembolism	1,618 European ancestry cases, 42,881 European ancestry controls	3,231 European ancestry cases, 3,536 European ancestry controls	4q32.1	FGG	rs6536024-C	0.42	2E-13		1.25	[1.18-1.32]	Affymetrix, Illumina [2543885] (imputed)	N
1771	chr4	155545071	155545072	rs7654093	26908601	Hinds DA	2016-02-09	Hum Mol Genet	Genome-wide association analysis of self-reported events in 6135 individuals and 252 827 controls identifies 8 loci associated with thrombosis.	Thrombosis	6,135 European ancestry cases, 252,827 European ancestry controls	NA	4q32.1	FGG	rs7654093-T	0.2322	2E-19		1.216	[1.166- 1.267]	Illumina [at least 560000] (imputed)	N
1771	chr4	155546158	155546159	rs76289367	26561523	de Vries PS	2015-11-10	Hum Mol Genet	A meta-analysis of 120 246 individuals identifies 18 new loci for fibrinogen concentration.	Fibrinogen levels	120,246 European ancestry individuals	NA	4q32.1	FGG	rs76289367-G	0.148	2E-76		0.0263	NR unit increase	Affymetrix, Illumina [~ 10700000] (imputed)	N
1771	chr4	155548311	155548312	rs114118113	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	4q32.1	LRAT	rs114118113-T	0.0166598601525619	4E-6	(G_Eisenbergiella_HB)	1.04397	[0.6-1.49] unit increase	Illumina [7711310] (imputed)	N
1772	chr4	155611218	155611219	rs2404476	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-6 levels	8,189 Finnish ancestry individuals	NA	4q32.1	NR	rs2404476-G	NR	8E-6		0.0701	[0.039-0.101] SD units decrease	NR [10700000] (imputed)	N
1772	chr4	155654420	155654421	rs727153	18823527	Abraham R	2008-09-29	BMC Med Genomics	A genome-wide association study for late-onset Alzheimer's disease using DNA pooling.	Alzheimer's disease	1,082 European ancestry cases, 1,239 European ancestry controls	1,400 controls	4q32.1	intergenic	rs727153-C	0.52	3E-6		1.63	[1.37-1.95]	Illumina [561494]	N
1773	chr4	155722284	155722285	rs147993971	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	4q32.1		rs147993971-T	NR	3E-7		4.0645	[2.55-5.58] unit increase	Illumina [NR] (imputed)	N
1773	chr4	155763891	155763892	rs7683128	33223526	Hong S	2020-11-22	Transl Psychiatry	Genome-wide association study of Alzheimer's disease CSF biomarkers in the EMIF-AD Multimodal Biomarker Discovery dataset.	Central cerebrospinal fluid amyloid beta 42 to 40 ratio (abnormal vs normal)	418 European ancestry cases, 259 European ancestry controls	NA	4q32.1		rs7683128-C	0.5583	1E-5		1.816	[1.3938000000000001-2.3661]	Illumina [7778465] (imputed)	N
1774	chr4	155954955	155954956	rs79028271	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,931 Sub-Saharan African ancestry males	NA	4q32.1		rs79028271-G	0.974892	6E-6		0.0400726	[0.023-0.057] unit decrease	Illumina [13900000] (imputed)	N
1775	chr4	156044734	156044735	rs55978416	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	4q32.1	intergenic	rs55978416-C	NR	4E-6	(AA)			Illumina [up to 11995908] (imputed)	N
1775	chr4	156044734	156044735	rs55978416	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	4q32.1	intergenic	rs55978416-C	NR	4E-6				Illumina [up to 11995908] (imputed)	N
1775	chr4	156049069	156049070	rs7669967	28654678	Mandage R	2017-06-27	PLoS One	Genetic factors affecting EBV copy number in lymphoblastoid cell lines derived from the 1000 Genome Project samples.	Epstein-Barr virus copy number in lymphoblastoid cell lines	389 East Asian ancestry individuals, 189 South Asian ancestry individuals, 492 European ancestry individuals, 467 Sub-Saharan African ancestry individuals, 59 African American individuals, 157 Hispanic/Latino individuals	NA	4q32.1	RBM46, NPY2R	rs7669967-?	NR	7E-6	(EA)			NR [at least 880000]	N
1775	chr4	156057351	156057352	rs4323056	29432556	Brooke RJ	2018-02-08	J Natl Cancer Inst	A High-risk Haplotype for Premature Menopause in Childhood Cancer Survivors Exposed to Gonadotoxic Therapy.	Premature menopause in childhood cancer survivors	27 European ancestry cases, 3 African ancestry cases, 658 European ancestry controls, 111 African ancestry controls	NA	4q32.1	NPY2R	rs4323056-A	NR	4E-7		6.87	[2.86-16.52]	Affymetrix [10993255] (imputed)	N
1775	chr4	156069878	156069879	rs2880418	29432556	Brooke RJ	2018-02-08	J Natl Cancer Inst	A High-risk Haplotype for Premature Menopause in Childhood Cancer Survivors Exposed to Gonadotoxic Therapy.	Premature menopause in childhood cancer survivors	27 European ancestry cases, 3 African ancestry cases, 658 European ancestry controls, 111 African ancestry controls	NA	4q32.1	NPY2R	rs2880418-G	NR	2E-6		5.66	[2.52-12.73]	Affymetrix [10993255] (imputed)	N
1776	chr4	156108932	156108933	rs4402990	29432556	Brooke RJ	2018-02-08	J Natl Cancer Inst	A High-risk Haplotype for Premature Menopause in Childhood Cancer Survivors Exposed to Gonadotoxic Therapy.	Premature menopause in childhood cancer survivors	27 European ancestry cases, 3 African ancestry cases, 658 European ancestry controls, 111 African ancestry controls	NA	4q32.1	NPY2R	rs4402990-C	NR	8E-6		4.19	[2.10-8.37]	Affymetrix [10993255] (imputed)	N
1776	chr4	156118324	156118325	rs9999820	29432556	Brooke RJ	2018-02-08	J Natl Cancer Inst	A High-risk Haplotype for Premature Menopause in Childhood Cancer Survivors Exposed to Gonadotoxic Therapy.	Premature menopause in childhood cancer survivors	27 European ancestry cases, 3 African ancestry cases, 658 European ancestry controls, 111 African ancestry controls	NA	4q32.1	NPY2R	rs9999820-G	NR	3E-7		7.52	[2.95-19.22]	Affymetrix [10993255] (imputed)	N
1776	chr4	156145115	156145116	rs79892985	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Cuneus cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	4q32.1	NR	rs79892985-?		8E-6				Illumina [4322238] (imputed)	N
1776	chr4	156171544	156171545	rs11934271	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Choroid plexus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	4q32.1	NR	rs11934271-?		9E-6				Illumina [4322238] (imputed)	N
1777	chr4	156265335	156265336	rs75174989	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Lateral ventricle temporal horn volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	4q32.1	MAP9	rs75174989-?		3E-8				Illumina [4322238] (imputed)	N
1777	chr4	156276075	156276076	rs3775248	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	4q32.1	NR	rs3775248-?	NR	9E-7		4.92	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1777	chr4	156350664	156350665	rs181836204	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	4q32.1		rs181836204-T	0.997351	5E-8		0.224821	[0.14-0.31] unit increase	NR [11722792] (imputed)	N
1778	chr4	156384634	156384635	rs115005126	28957384	Kim SK	2017-09-28	PLoS One	Two genetic loci associated with ankle injury.	Ankle injury	1,421 European ancestry cases, 154 Hispanic/Latino cases, 121 East Asian ancestry cases, 81,843 European ancestry controls, 8,406 Hispanic/Latino controls, 7,397 East Asian ancestry controls	NA	4q32.1	NR	rs115005126-C	NR	7E-6		1.7271		Affymetrix [8183964] (imputed)	N
1778	chr4	156393640	156393641	rs4690974	31879980	German CA	2019-12-26	Genet Epidemiol	Ordered multinomial regression for genetic association analysis of ordinal phenotypes at Biobank scale.	Hypertension	30,822 British ancestry normal blood pressure individuals, 25,242 British ancestry elevated blood pressure individuals, 50,461 British ancestry stage 1 hypertension individuals, 75,286 British ancestry stage 2 hypertension individuals, 3,754 British ancestry hypertension crisis individuals	NA	4q32.1	NR	rs4690974-?	NR	2E-9		0.0365988	NR unit decrease	Affymetrix [464137]	N
1778	chr4	156397272	156397273	rs6536072	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	4q32.1		rs6536072-C	NR	6E-19		0.0178	[0.014-0.022] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
1778	chr4	156398687	156398688	rs4691666	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	4q32.1	RP13-487K5.1	rs4691666-C	0.466701	6E-11		0.039503828	[0.028-0.051] unit increase	Affymetrix [7288503] (imputed)	N
1778	chr4	156406054	156406055	rs146853253	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Pulse pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	4q32.1	GUCY1A3, GUCY1B3	rs146853253-?	0.16	7E-14		0.316	[0.24-0.39] unit increase	Affymetrix [~ 9800000] (imputed)	N
1778	chr4	156408672	156408673	rs1155422	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	4q32.1	MAP9	rs1155422-T	0.5118	1E-10		0.1685	[0.12-0.22] mmHg decrease	Affymetrix [NR] (imputed)	N
1778	chr4	156417908	156417909	rs6837085	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (father's age at death)	309,383 European ancestry individuals	NA	4q32.1	NR	rs6837085-G	NR	7E-6		0.0114	[0.0064-0.0164] unit increase	Illumina [541614]	N
1778	chr4	156420604	156420605	rs6536076	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls	NA	4q32.1	RP13-487K5.1	rs6536076-A	0.307892	1E-10		0.054945584	[0.038-0.072] unit increase	Affymetrix [7288503] (imputed)	N
1778	chr4	156420604	156420605	rs6536076	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	4q32.1		rs6536076-?	NR	4E-31				NR [~ 8900000] (imputed)	N
1778	chr4	156420604	156420605	rs6536076	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	4q32.1		rs6536076-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1778	chr4	156424016	156424016	rs141454330	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	4q32.1		rs141454330-AT	NR	2E-15		0.0194	[0.015-0.024] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1778	chr4	156432367	156432368	rs2880099	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (vasodilators used in cardiac diseases)	5,546 European ancestry cases, 237,113 European ancestry controls, 17,050 East Asian ancestry cases, 161,676 East Asian ancestry controls	NA	4q32.1		rs2880099-C	NR	1E-8		0.0638	[0.042-0.086] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1778	chr4	156432367	156432368	rs2880099	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	4q32.1	intergenic	rs2880099-A	0.138	1E-10		0.06	[0.042-0.078] unit increase	Affymetrix [7947838] (imputed)	N
1778	chr4	156433307	156433308	rs2341599	32589924	Bi W	2020-06-23	Am J Hum Genet	A Fast and Accurate Method for Genome-Wide Time-to-Event Data Analysis and Its Application to UK Biobank.	Essential hypertension (time to event)	76,566 British ancestry cases, 206,305 British ancestry controls	NA	4q32.1	MAP9, GUCY1A3	rs2341599-?	NR	1E-7				NR [~ 24000000] (imputed)	N
1778	chr4	156433307	156433308	rs2341599	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls	NA	4q32.1	RP13-487K5.1	rs2341599-G	0.339251	2E-9		0.050767988	[0.034-0.067] unit increase	Affymetrix [7288503] (imputed)	N
1778	chr4	156436516	156436517	rs13118820	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	4q32.1	intergenic	rs13118820-A	0.3641	1E-10		0.042	[0.029-0.055] unit increase	NR [8041861] (imputed)	N
1778	chr4	156441313	156441314	rs4691707	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Systolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	4q32.1	GUCY1A3, GUCY1B3	rs4691707-A	0.652	7E-9		0.349	[0.23-0.47] mm Hg decrease	Affymetrix, Illumina, Perlegen [128272]	N
1778	chr4	156442007	156442019	rs139784759	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 142,336 Japanese ancestry controls	NA	4q32.1	MAP9, GUCY1A3	rs139784759-?	NR	5E-9		0.063251	[0.042-0.084] unit decrease	Illumina [19707525] (imputed)	N
1778	chr4	156450199	156450200	rs7436887	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	4q32.1	NR	rs7436887-A	0.6587	9E-10	(East Asian)	0.2545	[0.17-0.34] unit increase	Illumina [6200000] (imputed)	N
1778	chr4	156478646	156478647	rs2625268	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls, 20,367 East Asian ancestry cases, 158,359 East Asian ancestry controls	NA	4q32.1		rs2625268-T	NR	1E-8		0.0401	[0.026-0.054] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1779	chr4	156507677	156507678	rs990619	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	4q32.1	GUCY1A3	rs990619-C	0.47636	2E-8		0.0117349	[0.0076-0.0158] unit increase	Affymetrix [NR] (imputed)	N
1779	chr4	156510035	156510036	rs1483035	26379185	Garcia-Etxebarria K	2015-09-17	PLoS One	No Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity.	Influenza A (H1N1) severity	49 European ancestry severe cases, 107 European ancestry mild cases	NA	4q32.1	GUCY1A3	rs1483035-?	0.5385	6E-6		4.16	[2.18-7.94]	Affymetrix [547296]	N
1779	chr4	156511458	156511459	rs1842896	22751097	Lu X	2012-07-01	Nat Genet	Genome-wide association study in Han Chinese identifies four new susceptibility loci for coronary artery disease.	Coronary heart disease	1,515 Han Chinese ancestry cases, 5,019 Han Chinese ancestry controls	15,460 Han Chinese ancestry cases, 11,472 Han Chinese ancestry controls	4q32.1	GUCY1A3	rs1842896-T	0.76	1E-11		1.14	[1.10-1.19]	Affymetrix [~ 2200000] (imputed)	N
1779	chr4	156513292	156513293	rs1965937	31194736	Tiensuu H	2019-06-13	PLoS Genet	Risk of spontaneous preterm birth and fetal growth associates with fetal SLIT2.	Spontaneous preterm birth without premature rupture of membranes	101 Finnish ancestry infant cases, 419 Finnish ancestry infant controls	NA	4q32.1	LOC105377505, GUCY1A3	rs1965937-?	NR	9E-6		4.347826		Illumina [6778521] (imputed)	N
1779	chr4	156514941	156514942	rs6835414	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	4q32.1		rs6835414-T	NR	2E-13		0.015	[0.011-0.019] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
1779	chr4	156540020	156540021	rs12650590	30921485	Bejaoui Y	2019-03-28	Exp Dermatol	Genome-wide association study of psoriasis in an Egyptian population.	Psoriasis	215 Egyptian ancestry cases, 416 Egyptian ancestry controls	321 Egyptian ancestry cases, 253 Egyptian ancestry controls	4q32.1	GUCY1A3	rs12650590-?	NR	4E-8		2.41	[1.78-3.26]	Illumina [312245]	N
1779	chr4	156566034	156566035	rs145936829	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Alcohol consumption x experiences in childhood (felt loved by family member) interaction	41,648 European ancestry individuals	NA	4q32.1		rs145936829-?	NR	2E-8		1.7923	[1.17-2.42] unit decrease	Affymetrix [NR] (imputed)	N
1779	chr4	156594908	156594909	rs150929669	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Alcohol consumption x experiences in childhood (felt loved by family member) interaction	41,648 European ancestry individuals	NA	4q32.1		rs150929669-?	NR	3E-8		1.7603	[1.14-2.38] unit decrease	Affymetrix [NR] (imputed)	N
1779	chr4	156613177	156613178	rs4691052	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Uterine fibroids (MTAG)	5,236 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	4q32.1	Intergenic	rs4691052-?		3E-6		1.04	[1.02-1.05]	Illumina [7645193] (imputed)	N
1779	chr4	156614183	156614184	rs13131930	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	4q32.1	GUCY1A3	rs13131930-T	0.257	5E-19		0.065	[0.051-0.079] unit decrease	Affymetrix [7947838] (imputed)	N
1779	chr4	156616620	156616621	rs7688323	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls	NA	4q32.1	GUCY1A3	rs7688323-G	0.204893	3E-8		0.054884225	[0.036-0.074] unit decrease	Affymetrix [7288503] (imputed)	N
1779	chr4	156619203	156619204	rs13143871	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	4q32.1	NR	rs13143871-C	0.261747	1E-10		0.014007	[0.0098-0.0182] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1779	chr4	156619203	156619204	rs13143871	25249183	Lu X	2014-09-23	Hum Mol Genet	Genome-wide association study in Chinese identifies novel loci for blood pressure and hypertension.	Systolic blood pressure	11,816 Han Chinese ancestry individuals	69,146 Han Chinese ancestry individuals	4q32.1	GUCY1A3	rs13143871-T	0.8	5E-8		0.96	[0.61-1.31] unit increase	Affymetrix, Illumina [2485448] (imputed)	N
1779	chr4	156619203	156619204	rs13143871	25249183	Lu X	2014-09-23	Hum Mol Genet	Genome-wide association study in Chinese identifies novel loci for blood pressure and hypertension.	Hypertension	5,065 Han Chinese ancestry cases, 4,404 Han Chinese ancestry controls	29,799 Han Chinese ancestry cases, 39,347 Han Chinese ancestry controls	4q32.1	GUCY1A3	rs13143871-T	0.8	1E-6				Affymetrix, Illumina [2485448] (imputed)	N
1779	chr4	156619203	156619204	rs13143871	25249183	Lu X	2014-09-23	Hum Mol Genet	Genome-wide association study in Chinese identifies novel loci for blood pressure and hypertension.	Diastolic blood pressure	11,816 Han Chinese ancestry individuals	69,146 Han Chinese ancestry individuals	4q32.1	GUCY1A3	rs13143871-T	0.8	6E-7		0.49	[0.29-0.69] unit increase	Affymetrix, Illumina [2485448] (imputed)	N
1779	chr4	156626077	156626078	rs34914832	32469254	Matsunaga H	2020-05-29	Circ Genom Precis Med	Transethnic Meta-analysis of Genome-wide Association Studies Identifies Three New Loci and Characterizes Population-specific Differences for Coronary Artery Disease.	Coronary artery disease	15,302 Japanese ancestry cases, 76,014 European and East Asian ancestry cases, 36,140 Japanese ancestry controls, 264,785 European and East Asian ancestry controls	NA	4q32.1	GUCY1A3	rs34914832-G	0.79	3E-11		1.07	[1.05-1.08]	Illumina [5167567] (imputed)	N
1779	chr4	156626587	156626588	rs11725969	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption interaction (2df test)	63,608 European ancestry drinkers, 10,193 African American or Afro-Caribbean heavy drinkers,  2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,494 European ancestry non-drinkers, 11,224 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,002 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,452 Hispanic drinkers, 43,316 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,945 Asian ancestry non-drinkers, 6,925 Hispanic non-drinkers	4q32.1	GUCY1A3	rs11725969-T	0.25	6E-19	(Asian, EA, Hispanic)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1779	chr4	156626587	156626588	rs11725969	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption interaction (2df test)	91,110 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	237,996 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,315 European ancestry non-drinkers, 2,761 African ancestry non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	4q32.1	GUCY1A3	rs11725969-T	0.25	7E-12	(Asian, EA, Hispanic)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1779	chr4	156626587	156626588	rs11725969	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption (light vs heavy) interaction (2df test)	56,705 European ancestry heavy and light drinkers, 9,725 African American or Afro-Caribbean heavy and light drinkers, 1,789 Asian ancestry heavy and light drinkers, 4,812 Hispanic or Latin American heavy and light drinkers	42,077 European ancestry heavy drinkers, 217 African American heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic ancestry heavy drinkers, 74,701 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	4q32.1	GUCY1A3	rs11725969-T	0.25	1E-8	(AA, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1779	chr4	156626587	156626588	rs11725969	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption interaction (2df test)	63,607 European ancestry drinkers, 10,193 African American or Afro-Caribbean drinkers, 2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,492 European ancestry non-drinkers, 11,223 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,058 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	4q32.1	GUCY1A3	rs11725969-T	0.25	2E-22	(AA, Asian, EA, Hispanic)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1779	chr4	156626587	156626588	rs11725969	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption (light vs heavy) interaction (2df test)	12,758 European ancestry heavy drinkers, 1,326 African American or Afro-Caribbean heavy drinkers, 648 Asian ancestry heavy drinkers, 364 Hispanic or Latin American heavy drinkers, 43,947 European ancestry light drinkers, 8,239 African American or Afro-Caribbean light drinkers, 1,141 Asian ancestry light drinkers, 4,448 Hispanic or Latin American light drinkers	42,079 European ancestry heavy drinkers, 217 African American or Afro-Caribbean heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic ancestry heavy drinkers, 74,757 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	4q32.1	GUCY1A3	rs11725969-T	0.25	2E-8	(AA, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1780	chr4	156631344	156631345	rs3796592	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	4q32.1	GUCY1A3	rs3796592-C	0.7958	2E-12		0.2949	[0.21-0.38] mmHg increase	Affymetrix [NR] (imputed)	N
1780	chr4	156633185	156633186	rs10019835	26305897	Iyengar SK	2015-08-25	PLoS Genet	Genome-Wide Association and Trans-ethnic Meta-Analysis for Advanced Diabetic Kidney Disease: Family Investigation of Nephropathy and Diabetes (FIND).	Diabetic kidney disease	1,564 African American cases, 369  African American diabetic controls, 1,288 African American non-diabetic controls, 538 American Indian ancestry cases, 319 American Indian ancestry diabetic controls, 342 European ancestry cases, 404 European ancestry diabetic controls, 779 Mexican ancestry cases, 594 Mexican ancestry diabetic controls	950 African American cases, 50 African American diabetic controls, 1,887 African American non-diabetic controls, 471 American Indian ancestry cases, 340 American Indian ancestry diabetic controls, 486 American Indian ancestry non-diabetic controls, 582 European ancestry ancestry cases, 205 European ancestry diabetic controls, 2,568 European ancestry non-diabetic controls	4q32.1	GUCY1A3	rs10019835-?	0.63	5E-7	(American Indian, additive )	1.4285715		Affymetrix [NR]	N
1780	chr4	156633443	156633444	rs56329057	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	4q32.1		rs56329057-T	NR	9E-13		0.0436	[0.032-0.056] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1780	chr4	156633443	156633444	rs56329057	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	4q32.1	GUCY1A3	rs56329057-T	0.183334	2E-13		0.05747693	[0.042-0.073] unit decrease	Affymetrix [7288503] (imputed)	N
1780	chr4	156633443	156633444	rs56329057	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	4q32.1		rs56329057-?	NR	3E-23				NR [~ 8900000] (imputed)	N
1780	chr4	156635308	156635309	rs7692387	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	4q32.1	GUCY1A1	rs7692387-A	0.1854	4E-12		0.0169	[0.012-0.022] unit increase	Affymetrix [18391927] (imputed)	N
1780	chr4	156635308	156635309	rs7692387	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	4q32.1	GUCY1A3	rs7692387-A	0.1892	3E-23		0.0643	[0.052-0.077] unit decrease	Affymetrix [at least 7947838] (imputed)	N
1780	chr4	156635308	156635309	rs7692387	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	4q32.1	GUCY1A3	rs7692387-A	0.1904	4E-22		0.0687	[0.055-0.083] unit decrease	NR [8041861] (imputed)	N
1780	chr4	156635308	156635309	rs7692387	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Diastolic blood pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	4q32.1	GUCY1A3-GUCY1B3	rs7692387-A	0.1992	2E-8		0.0226	unit decrease	Illumina [242296]	N
1780	chr4	156638072	156638073	rs3796587	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	4q32.1	GUCY1A3	rs3796587-?	NR	5E-27		0.0656284	[0.054-0.078] unit decrease	Illumina [4804024] (imputed)	N
1780	chr4	156638572	156638573	rs2306556	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Stable angina pectoris	17,894 European ancestry cases, 325,132 European ancestry controls, 18,833 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	4q32.1		rs2306556-G	NR	2E-10		0.0644	[0.044-0.084] unit decrease	Affymetrix, Illumina [20456336] (imputed)	N
1780	chr4	156638572	156638573	rs2306556	28714975	Nelson CP	2017-07-17	Nat Genet	Association analyses based on false discovery rate implicate new loci for coronary artery disease.	Coronary artery disease (myocardial infarction, percutaneous transluminal coronary angioplasty, coronary artery bypass grafting, angina or chromic ischemic heart disease)	18,467 European and unknown ancestry cases, 45,264 European and unknown ancestry controls	57,347 European and unknown ancestry cases, 219,521 European and unknown ancestry controls	4q32.1	GUCY1A3	rs2306556-A	0.816	1E-9		1.07	[1.04-1.09]	Affymetrix [9149595] (imputed)	N
1780	chr4	156639887	156639888	rs72689147	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls, 49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	4q32.1		rs72689147-T	NR	1E-9		0.0431	[0.029-0.057] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1780	chr4	156639887	156639888	rs72689147	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Angina pectoris	30,025 European ancestry cases, 440,906 European ancestry controls, 14,007 East Asian ancestry cases, 145,158 East Asian ancestry controls	NA	4q32.1		rs72689147-T	NR	7E-12		0.0659	[0.047-0.085] unit decrease	Affymetrix, Illumina [25842036] (imputed)	N
1780	chr4	156639887	156639888	rs72689147	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	4q32.1	GUCY1A3	rs72689147-G	0.819431	7E-13		1.07	[1.05-1.09]	NR [8126035] (imputed)	N
1780	chr4	156639887	156639888	rs72689147	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls	NA	4q32.1	GUCY1A3	rs72689147-T	0.184352	2E-10		0.06605871	[0.046-0.086] unit decrease	Affymetrix [7288503] (imputed)	N
1780	chr4	156639887	156639888	rs72689147	26343387	Nikpay M	2015-09-07	Nat Genet	A comprehensive 1,000 Genomes-based genome-wide association meta-analysis of coronary artery disease.	Myocardial infarction	27,509 European ancestry cases, 130 African American cases, 278 Hispanic American cases, 10,257 South Asian ancestry cases, 288 Lebanese ancestry cases, 1,687 East Asian ancestry cases, 99,121 European ancestry controls, 2,778 African American controls, 3,337 Hispanic American controls, 12,899 South Asian ancestry controls, 466 Lebanese ancestry controls, 7,709 East Asian ancestry controls	NA	4q32.1	GUCY1A3	rs72689147-G	0.82	2E-8		1.08	[1.05-1.1]	Affymetrix, Illumina [8600000] (imputed)	N
1780	chr4	156639887	156639888	rs72689147	26343387	Nikpay M	2015-09-07	Nat Genet	A comprehensive 1,000 Genomes-based genome-wide association meta-analysis of coronary artery disease.	Coronary artery disease	42,096 European ancestry cases, 361 African American cases, 758 Hispanic American cases, 12,658 South Asian ancestry cases, 1,802 Lebanese ancestry cases, 3,614 East Asian ancestry cases, 99,121 European ancestry controls, 2,778 African American controls, 3,337 Hispanic American controls, 12,899 South Asian ancestry controls, 466 Lebanese ancestry controls, 7,709 East Asian ancestry controls	NA	4q32.1	GUCY1A3	rs72689147-G	0.816978	6E-9		1.07	[1.05- 1.10]	Affymetrix, Illumina [8600000] (imputed)	N
1780	chr4	156645512	156645513	rs13139571	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	4q32.1	GUCY1A3	rs13139571-A	0.234634	4E-9		0.015340015	[0.01-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1780	chr4	156645512	156645513	rs13139571	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	4q32.1		rs13139571-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1780	chr4	156645512	156645513	rs13139571	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Hypertension	22,566 Japanese ancestry cases, 28,226 Japanese ancestry controls	8,809 East Asian ancestry cases, 13,663 East Asian ancestry controls, 105,253 European ancestry individuals	4q32.1	GUCY1A3, GUCY1B3	rs13139571-A	0.2447	6E-6	(Japanese)	0.0719	[0.041-0.103] unit decrease	Illumina [6200000] (imputed)	N
1780	chr4	156645512	156645513	rs13139571	30104761	Zhou W	2018-08-13	Nat Genet	Efficiently controlling for case-control imbalance and sample relatedness in large-scale genetic association studies.	Coronary artery disease	31,355 European ancestry cases, 377,103 European ancestry controls	NA	4q32.1	GUCY1A3	rs13139571-A	0.233	3E-10				Affymetrix [28000000] (imputed)	N
1780	chr4	156645512	156645513	rs13139571	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption interaction (2df test)	63,608 European ancestry drinkers, 10,193 African American or Afro-Caribbean heavy drinkers,  2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,494 European ancestry non-drinkers, 11,224 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,002 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,452 Hispanic drinkers, 43,316 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,945 Asian ancestry non-drinkers, 6,925 Hispanic non-drinkers	4q32.1	GUCY1A3	rs13139571-A	0.23	9E-15	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1780	chr4	156645512	156645513	rs13139571	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption (light vs heavy) interaction (2df test)	56,705 European ancestry heavy and light drinkers, 9,725 African American or Afro-Caribbean heavy and light drinkers, 1,789 Asian ancestry heavy and light drinkers, 4,812 Hispanic or Latin American heavy and light drinkers	42,077 European ancestry heavy drinkers, 217 African American heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic ancestry heavy drinkers, 74,701 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	4q32.1	GUCY1A3	rs13139571-A	0.24	2E-9	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1780	chr4	156645512	156645513	rs13139571	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption (light vs heavy) interaction (2df test)	12,758 European ancestry heavy drinkers, 1,326 African American or Afro-Caribbean heavy drinkers, 648 Asian ancestry heavy drinkers, 364 Hispanic or Latin American heavy drinkers, 43,947 European ancestry light drinkers, 8,239 African American or Afro-Caribbean light drinkers, 1,141 Asian ancestry light drinkers, 4,448 Hispanic or Latin American light drinkers	42,079 European ancestry heavy drinkers, 217 African American or Afro-Caribbean heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic ancestry heavy drinkers, 74,757 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	4q32.1	GUCY1A3	rs13139571-A	0.24	3E-9	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1780	chr4	156645512	156645513	rs13139571	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure (cigarette smoking interaction)	80,552 European ancestry individuals, 27,118 African individuals, 13,438 Asian individuals, 8,805 Hispanic individuals	305,513 European ancestry individuals, 7,786 African individuals, 148,932 Asian individuals, 13,533 Hispanic individuals, 4,414 Brazilian individuals	4q32.1	GUCY1A3-1B3	rs13139571-?	NR	8E-19				Affymetrix, Illumina [18800000] (imputed)	N
1780	chr4	156645512	156645513	rs13139571	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure (cigarette smoking interaction)	80,552 European ancestry individuals, 27,118 African individuals, 13,438 Asian individuals, 8,805 Hispanic individuals	305,513 European ancestry individuals, 7,786 African individuals, 148,932 Asian individuals, 13,533 Hispanic individuals, 4,414 Brazilian individuals	4q32.1	GUCY1A3-1B3	rs13139571-?		1E-24				Affymetrix, Illumina [18800000] (imputed)	N
1780	chr4	156645512	156645513	rs13139571	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Systolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	4q32.1	GUCY1A3, GUCY1B3	rs13139571-A	0.236	5E-6	(EA, initial)	0.386	[0.22-0.55] unit decrease	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
1780	chr4	156645512	156645513	rs13139571	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Diastolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	4q32.1	GUCY1A3, GUCY1B3	rs13139571-A	0.236	2E-6	(EA, initial)	0.247	[0.15-0.35] unit decrease	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
1780	chr4	156645512	156645513	rs13139571	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	4q32.1	GUCY1A3	rs13139571-C		6E-13		0.319	unit increase	Affymetrix [at least 2696785] (imputed)	N
1780	chr4	156645512	156645513	rs13139571	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	4q32.1	GUCY1A3	rs13139571-C		3E-19		0.242	unit increase	Affymetrix [at least 2696785] (imputed)	N
1780	chr4	156645512	156645513	rs13139571	21909115	Ehret GB	2011-09-11	Nature	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Systolic blood pressure	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	4q32.1	GUCY1A3, GUCY1B3	rs13139571-C	0.76	1E-6		0.321	[NR] mmHg increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1780	chr4	156645512	156645513	rs13139571	21909115	Ehret GB	2011-09-11	Nature	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Diastolic blood pressure	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	4q32.1	GUCY1A3, GUCY1B3	rs13139571-C	0.76	2E-10		0.26	[NR] mmHg increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1780	chr4	156645512	156645513	rs13139571	21909110	Wain LV	2011-09-11	Nat Genet	Genome-wide association study identifies six new loci influencing pulse pressure and mean arterial pressure.	Blood pressure	74,064 European ancestry individuals	48,607 European ancestry individuals	4q32.1	GUCY1A3, GUCY1B3	rs13139571-C	0.74	3E-7	(Mean Arterial Pressure)	0.289	[0.18-0.40] mmHg increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1780	chr4	156646339	156646340	rs11724647	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	4q32.1		rs11724647-?	NR	2E-20				NR [~ 8900000] (imputed)	N
1780	chr4	156659818	156659819	rs11731886	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	20,917 European ancestry cases, 440,906 European ancestry controls, 14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	4q32.1		rs11731886-C	NR	6E-16		0.0833	[0.063-0.103] unit decrease	Affymetrix, Illumina [25841367] (imputed)	N
1780	chr4	156659818	156659819	rs11731886	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls, 33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	4q32.1		rs11731886-C	NR	1E-8		0.0324	[0.021-0.044] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1780	chr4	156659818	156659819	rs11731886	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	4q32.1		rs11731886-C	NR	2E-14		0.0177	[0.013-0.022] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1780	chr4	156659818	156659819	rs11731886	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls	NA	4q32.1	RP11-588K22.2	rs11731886-C	0.236995	4E-8		0.0532221	[0.034-0.072] unit decrease	Affymetrix [7288503] (imputed)	N
1780	chr4	156659818	156659819	rs11731886	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption interaction (2df test)	63,608 European ancestry drinkers, 10,193 African American or Afro-Caribbean heavy drinkers,  2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,494 European ancestry non-drinkers, 11,224 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,002 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,452 Hispanic drinkers, 43,316 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,945 Asian ancestry non-drinkers, 6,925 Hispanic non-drinkers	4q32.1	LOC105377506, GUCY1A3	rs11731886-A	0.76	1E-15	(Asian, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1780	chr4	156659818	156659819	rs11731886	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption interaction (2df test)	63,607 European ancestry drinkers, 10,193 African American or Afro-Caribbean drinkers, 2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,492 European ancestry non-drinkers, 11,223 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,058 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	4q32.1	LOC105377506, GUCY1A3	rs11731886-A	0.76	2E-18	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1780	chr4	156666990	156666991	rs6536088	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Hypertension	22,566 Japanese ancestry cases, 28,226 Japanese ancestry controls	8,809 East Asian ancestry cases, 13,663 East Asian ancestry controls, 105,253 European ancestry individuals	4q32.1	NR	rs6536088-A	0.5549	2E-9	(East Asian)	0.0665	[0.045-0.088] unit increase	Illumina [6200000] (imputed)	N
1780	chr4	156668721	156668722	rs10030758	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Uterine fibroids	5,236 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	4q32.1	Intergenic	rs10030758-?		1E-6		1.12	[1.07-1.17]	Illumina [7645193] (imputed)	N
1780	chr4	156677591	156677592	rs10517621	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q32.1	NR	rs10517621-T	0.244402	3E-10				Affymetrix, Illumina [24649327] (imputed)	N
1780	chr4	156683280	156683281	rs2219538	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	4q32.1	NR	rs2219538-A	0.157	2E-8	(East Asian)	0.4936	[0.32-0.67] unit decrease	Illumina [6200000] (imputed)	N
1780	chr4	156683280	156683281	rs2219538	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	4q32.1	NR	rs2219538-A	0.157	5E-8	(East Asian)	0.3391	[0.22-0.46] unit decrease	Illumina [6200000] (imputed)	N
1780	chr4	156685654	156685655	rs3796562	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 142,336 Japanese ancestry controls	NA	4q32.1	GUCY1B3	rs3796562-?	NR	3E-8		0.0587989	[0.038-0.08] unit increase	Illumina [19707525] (imputed)	N
1780	chr4	156697783	156697784	rs2125799	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	4q32.1	NR	rs2125799-C	0.3305	4E-9		0.0244	[0.016-0.032] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1780	chr4	156735072	156735073	rs62328468	31958309	Hsieh AR	2020-01-01	BMJ Open Diabetes Res Care	Lack of association of genetic variants for diabetic retinopathy in Taiwanese patients with diabetic nephropathy.	Diabetic retinopathy in type 2 diabetes	206 East Asian ancestry cases, 206 East Asian ancestry controls	NA	4q32.1	GUCY1B3	rs62328468-T	NR	4E-6		2.21	[1.58-3.09]	Affymetrix, Illumina [NR] (imputed)	N
1781	chr4	156808287	156808288	rs13122250	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	4q32.1	TDO2	rs13122250-T	0.55	9E-12	(tryptophan)	0.006	[0.004-0.008] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
1781	chr4	156871336	156871337	rs6832480	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CTSO	5,361 Icelandic ancestry individuals	NA	4q32.1		rs6832480-T	0.3027	8E-14		0.148867	[0.11-0.19] unit decrease	Illumina [7506463] (imputed)	N
1781	chr4	156879698	156879699	rs192691827	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q32.1	Intergenic	rs192691827-G	0.992	3E-6	(AA)	0.09	unit increase	Illumina [NR] (imputed)	N
1781	chr4	156887188	156887189	rs145368269	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q32.1	Intergenic	rs145368269-C	0.993	3E-6	(AA)	0.092	unit increase	Illumina [NR] (imputed)	N
1781	chr4	156892042	156892043	rs12233897	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	4q32.1	NR	rs12233897-G	0.4784	4E-13				NR [9056863] (imputed)	N
1782	chr4	156903843	156903844	rs12507353	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	4q32.1		rs12507353-T	0.48	2E-11		6.72	z score increase	Affymetrix [9061022] (imputed)	N
1782	chr4	156911310	156911311	rs4541456	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	4q32.1		rs4541456-G	0.48	1E-11		6.8	z score increase	Affymetrix [9061022] (imputed)	N
1782	chr4	156998540	156998541	rs4234898	19786962	Roeske D	2009-09-29	Mol Psychiatry	First genome-wide association scan on neurophysiological endophenotypes points to trans-regulation effects on SLC2A3 in dyslexic children.	Speech perception in dyslexia	200 European ancestry cases	186 European ancestry cases	4q32.1	PDGFC, CTSO, TDO2	rs4234898-T	NR	5E-8	(MMNb)			Illumina [297086]	N
1782	chr4	157000976	157000977	rs13104271	32321835	Alic L	2020-04-22	Proc Natl Acad Sci U S A	A genome-wide association study identifies key modulators of complement factor H binding to malondialdehyde-epitopes.	Complement factor H binding to malondialdehyde	934 European ancestry individuals	NA	4q32.1	NR	rs13104271-?		2E-6				Illumina [4278941] (imputed)	N
1782	chr4	157008850	157008851	rs60576102	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	4q32.1		rs60576102-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1782	chr4	157011922	157011923	rs10030044	32235003	Arbeev KG	2020-04-01	Aging (Albany NY)	Genetics of physiological dysregulation: findings from the long life family study using joint models.	Hand grip strength (Mahalanobis distance)	4,608 European ancestry individuals	NA	4q32.1	CTSO	rs10030044-?	NR	5E-6				Illumina [1464300]	N
1782	chr4	157012234	157012235	rs62328145	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	4q32.1	CTSO	rs62328145-A	0.0517407	1E-8		0.07875054	[0.052-0.106] unit increase	Affymetrix [7288503] (imputed)	N
1783	chr4	157036525	157036526	rs4690854	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Chickenpox	107,769 European ancestry cases, 15,982 European ancestry controls	NA	4q32.1	NR	rs4690854-?	NR	9E-6		0.0622	[0.035-0.09] unit decrease	Illumina [at least 560000] (imputed)	N
1783	chr4	157051463	157051464	rs555678255	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Thyroid cancer	762 European ancestry cases, 410,350 European ancestry controls	NA	4q32.1		rs555678255-C	0.898888	8E-7		1.9582	NR	Affymetrix [7846216] (imputed)	N
1783	chr4	157116925	157116926	rs9307941	31626034	Thomsen H	2019-10-11	Melanoma Res	Genome-wide study on uveal melanoma patients finds association to DNA repair gene TDP1.	Uveal melanoma	590 European ancestry cases, 5,199 European ancestry controls	NA	4q32.1		rs9307941-T	0.8	1E-6		1.52	[1.29-1.81]	Illumina [10258281] (imputed)	N
1784	chr4	157173663	157173664	rs7657890	28736931	Rotroff DM	2017-07-24	Clin Pharmacol Ther	Genetic Variants in HSD17B3, SMAD3, and IPO11 Impact Circulating Lipids in Response to Fenofibrate in Individuals With Type 2 Diabetes.	Triglyceride change in response to fenofibrate in statin-treated type 2 diabetes	781 European ancestry individuals, 138 African American ancestry individuals, 345 unknown ancestry individuals		4q32.1	intergenic	rs7657890-?	NR	5E-7		0.019	unit decrease	Affymetrix, Illumina [8129838] (imputed)	N
1784	chr4	157215617	157215618	rs17034349	34177493	Mountford HS	2021-06-09	Front Hum Neurosci	Genome-Wide Association Study of Motor Coordination.	Motor coordination	4,542 European ancestry children	NA	4q32.1	CTSO, PDGFC	rs17034349-C	NR	8E-6		1.309	[0.74-1.88] unit increase	Illumina [4774020] (imputed)	N
1784	chr4	157249802	157249803	rs13103662	34069769	Al-Sarraj Y	2021-05-18	Genes (Basel)	Family-Based Genome-Wide Association Study of Autism Spectrum Disorder in Middle Eastern Families.	Autism spectrum disorder	487 Middle Eastern ancestry individuals from 171 families	NA	4q32.1	NR	rs13103662-A	0.18	5E-6		0.89	[0.83-0.95]	Illumina [516320]	N
1785	chr4	157308303	157308304	rs72688980	31609978	Huang L	2019-10-14	PLoS Genet	Genetic factors define CPO and CLO subtypes of nonsyndromicorofacial cleft.	Nonsyndromic cleft palate	930 Southern Han Chinese ancestry cases, 5,048 Southern Han Chinese ancestry controls	1,141 Han Chinese ancestry cases, 5,097 Han Chinese ancestry controls	4q32.1	CTSO, PDGFC	rs72688980-G	0.026	2E-8		1.456	NR	Illumina [at least 870261] (imputed)	N
1785	chr4	157308303	157308304	rs72688980	31609978	Huang L	2019-10-14	PLoS Genet	Genetic factors define CPO and CLO subtypes of nonsyndromicorofacial cleft.	Nonsyndromic cleft lip	945 Southern Han Chinese ancestry cases, 5,048 Southern Han Chinese ancestry controls	1,273 Han Chinese ancestry cases, 5,097 Han Chinese ancestry controls	4q32.1	CTSO, PDGFC	rs72688980-G	0.026	1E-6		1.331	NR	Illumina [at least 870261] (imputed)	N
1785	chr4	157310774	157310775	rs546874055	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	4q32.1	NR	rs546874055-?	NR	8E-6		4.466	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1785	chr4	157332610	157332611	rs62328032	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 1, breadth of lateral portion of upper face)	2,187 European ancestry individuals	NA	4q32.1	NR	rs62328032-T	0.04933	4E-6		0.3212	[0.19-0.46] unit decrease	Illumina [10677593] (imputed)	N
1785	chr4	157340209	157340210	rs13124827	25108383	Geller F	2014-08-10	Nat Genet	Genome-wide association analyses identify variants in developmental genes associated with hypospadias.	Hypospadias	1,006 European ancestry male child cases, 2,390 European ancestry male child controls, 3,096 European ancestry female child controls	1,972 European ancestry male child cases, 1,401 European ancestry male child controls, 405 European ancestry female child controls, 6 European ancestry child controls	4q32.1	PDGFC	rs13124827-C	0.47	1E-9		1.23	[NR]	Illumina [8207076] (imputed)	N
1786	chr4	157479014	157479015	rs71607121	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	4q32.1	NR	rs71607121-G	0.17	8E-6	(IFNalpha_CXCL10_of_Monocytes)			Illumina [5084123] (imputed)	N
1786	chr4	157501053	157501054	rs41377546	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	4q32.1	PDGFC	rs41377546-G	0.820453	9E-14		0.0185999	[0.014-0.023] unit decrease	NR [13737936] (imputed)	N
1786	chr4	157507230	157507231	rs34687052	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	4q32.1		rs34687052-?	NR	1E-19		0.0196305	[0.015-0.024] unit increase	Affymetrix [20259828] (imputed)	N
1786	chr4	157507230	157507231	rs34687052	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	4q32.1	PDGFC	rs34687052-A	0.656524	1E-7	(men)	0.027797	[0.017-0.039] unit increase	NR [17166351] (imputed)	N
1786	chr4	157507230	157507231	rs34687052	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	4q32.1	PDGFC	rs34687052-A	0.656452	2E-10		0.0229723	[0.016-0.03] unit increase	NR [17166351] (imputed)	N
1786	chr4	157510048	157510049	rs36016056	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	4q32.1	PDGFC	rs36016056-G	0.74627	4E-26		0.0233228	[0.019-0.028] unit decrease	NR [13737936] (imputed)	N
1786	chr4	157521213	157521214	rs145092206	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (neutrophil)	27,236 European ancestry individuals	NA	4q32.1		rs145092206-A	0.0029	2E-8		1.8813	[1.23-2.53] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1786	chr4	157522103	157522104	rs62328649	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	4q32.1		rs62328649-?	NR	2E-20				NR [~ 8900000] (imputed)	N
1786	chr4	157523921	157523922	rs4446368	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental longevity (combined parental age at death)	45,627 middle-aged British individuals	NA	4q32.1	NR	rs4446368-?	NR	8E-6		0.03787	[0.021-0.054] unit decrease	Affymetrix [9658292] (imputed)	N
1786	chr4	157534248	157534249	rs10023685	28139693	Hoffmann TJ	2017-01-31	Nat Commun	Genome-wide association study of prostate-specific antigen levels identifies novel loci independent of prostate cancer.	Prostate-specific antigen levels	28,503 European ancestry individuals	2,716 Latino individuals, 2,518 East Asian ancestry individuals, 1,585 African American individuals, 6,193 European ancestry individuals (later diagnosed with prostate cancer), 5,603 European ancestry individuals	4q32.1	PDGFC	rs10023685-G	0.37	2E-9		0.0346789	[0.023-0.046] unit increase	Affymetrix [10109774] (imputed)	N
1787	chr4	157557582	157557583	rs11934833	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	4q32.1	ENSG00000251283	rs11934833-G	0.304434815491257	6E-9		0.0034045	[NR] unit decrease	Affymetrix [> 30000000] (imputed)	N
1787	chr4	157613652	157613653	rs10012484	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	4q32.1	NR	rs10012484-G	NR	2E-9		0.0158	[0.011-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
1787	chr4	157614724	157614725	rs4146700	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	4q32.1		rs4146700-G	NR	4E-8		0.0117	[0.0076-0.0158] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
1787	chr4	157617478	157617479	rs17035086	35157032	Ramachandran D	2022-02-14	Hum Mol Genet	Genome-wide association study and functional follow-up identifies 14q12 as a candidate risk locus for cervical cancer.	Cervical cancer	363 German ancestry cases, 861 German ancestry controls	NA	4q32.1	NR	rs17035086-T	0.0817	3E-6		21.334	[21.02-21.65]	Illumina [10000612] (imputed)	N
1787	chr4	157624378	157624379	rs76024494	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	4q32.1	PDGFC	rs76024494-?		3E-10				NR [7428630] (imputed)	N
1787	chr4	157627254	157627255	rs9332470	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	4q32.1	NR	rs9332470-G	0.228978	3E-10		0.016845794	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1787	chr4	157627254	157627255	rs9332470	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	4q32.1	NR	rs9332470-G	0.22898	2E-9		0.015932089	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1787	chr4	157640646	157640647	rs79669485	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	4q32.1		rs79669485-A	0.1	3E-23		9.92	z score increase	Affymetrix [9061022] (imputed)	N
1787	chr4	157644240	157644241	rs76326007	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	4q32.1		rs76326007-C	0.1	3E-13		7.29	z score increase	Affymetrix [9061022] (imputed)	N
1787	chr4	157644240	157644241	rs76326007	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	4q32.1	NR	rs76326007-C	0.0925	2E-11				NR [9056863] (imputed)	N
1787	chr4	157646954	157646955	rs28712547	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	4q32.1	NR	rs28712547-G	0.32094999999999996	3E-14		0.00962545	[0.007-0.0122] unit increase	Affymetrix [16585854] (imputed)	N
1787	chr4	157646954	157646955	rs28712547	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	4q32.1	NR	rs28712547-G	0.32094999999999996	2E-10		0.00955121	[0.0066-0.0125] unit increase	Affymetrix [16585866] (imputed)	N
1787	chr4	157652752	157652753	rs28819812	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	4q32.1	NR	rs28819812-C	0.6747	3E-14		0.0384	[0.028-0.048] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1787	chr4	157652752	157652753	rs28819812	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	4q32.1	NR	rs28819812-C	0.6586	3E-15		0.033	[0.025-0.041] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1787	chr4	157652752	157652753	rs28819812	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	4q32.1	PDGFC	rs28819812-C	0.6767	2E-8		1.04	[1.03-1.06]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1787	chr4	157660134	157660135	rs77795715	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	4q32.1		rs77795715-?	NR	2E-20				NR [9705931] (imputed)	N
1787	chr4	157660134	157660135	rs77795715	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q32.1	NR	rs77795715-T	0.0924362	2E-22				Affymetrix, Illumina [24588908] (imputed)	N
1787	chr4	157670536	157670537	rs6855363	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting insulin	151,013 European ancestry individuals	NA	4q32.1	PDGFC	rs6855363-T	0.6811	4E-8		0.0125	[0.0086-0.0164] unit increase	Affymetrix, Illumina [32635793] (imputed)	N
1787	chr4	157670536	157670537	rs6855363	30289880	Qi G	2018-10-05	PLoS Genet	Heritability informed power optimization (HIPO) leads to enhanced detection of genetic associations across multiple traits.	Lipid traits (pleiotropy) (HIPO component 1)	188,577 European ancestry individuals	NA	4q32.1	PDGFC	rs6855363-?	NR	2E-8				NR [1800000]	N
1787	chr4	157678279	157678280	rs112353975	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	4q32.1		rs112353975-A	NR	4E-13		0.0292	[0.021-0.037] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1787	chr4	157678279	157678280	rs112353975	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	4q32.1	PDGFC	rs112353975-A	0.092317	4E-19		0.03483699	[0.027-0.042] unit decrease	Affymetrix [93095623] (imputed)	N
1787	chr4	157678510	157678511	rs17035181	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	4q32.1	PDGFC	rs17035181-T	0.8548	2E-17		0.2949	[0.23-0.36] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1787	chr4	157678773	157678774	rs79389047	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	4q32.1	PDGFC	rs79389047-T	0.092	5E-12		0.04369262	[0.031-0.056] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1788	chr4	157681273	157681274	rs28730491	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	4q32.1	NR	rs28730491-C	0.318848	3E-24		0.00874802	[0.007-0.0105] unit increase	Affymetrix [16582909] (imputed)	N
1788	chr4	157681273	157681274	rs28730491	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	4q32.1	NR	rs28730491-C	0.318848	4E-16		0.00818639	[0.0062-0.0101] unit increase	Affymetrix [16582965] (imputed)	N
1788	chr4	157682187	157682188	rs113128512	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	4q32.1	PDGFC	rs113128512-C	0.0918	1E-9		0.03836823	[0.026-0.051] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1788	chr4	157682597	157682598	rs11100083	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	4q32.1	PDGFC	rs11100083-T	0.773785	1E-11		0.0160934	[0.011-0.021] unit increase	Affymetrix [NR] (imputed)	N
1788	chr4	157682597	157682598	rs11100083	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	4q32.1		rs11100083-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1788	chr4	157695391	157695392	rs983473	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	4q32.1	Intergenic	rs983473-T	0.2275	6E-9	(MTAG)	0.0091	[0.006-0.0122] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1788	chr4	157705550	157705551	rs7672622	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals		PDGFC	rs7672622-A	0.7352	3E-13		0.2297	[0.17-0.29] mmHg increase	Affymetrix [NR] (imputed)	N
1788	chr4	157705550	157705551	rs7672622	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals		PDGFC	rs7672622-A	0.7358	5E-9		0.1327	[0.088-0.177] mmHg increase	Affymetrix [NR] (imputed)	N
1788	chr4	157705550	157705551	rs7672622	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA			rs7672622-A	0.7459	5E-8		0.0088	[0.0057-0.0119] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1788	chr4	157706903	157706904	rs4691379	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	4q32.1	PDGFC	rs4691379-C	0.681061	6E-9		0.0118813	[0.0079-0.0159] unit decrease	Affymetrix [NR] (imputed)	N
1788	chr4	157709480	157709481	rs76115953	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	4q32.1		rs76115953-T	0.1	9E-25		10.27	z score increase	Affymetrix [9061022] (imputed)	N
1788	chr4	157709898	157709899	rs115960910	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	4q32.1	NR	rs115960910-G	0.0928	1E-17				NR [9056863] (imputed)	N
1788	chr4	157709898	157709899	rs115960910	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	4q32.1	NR	rs115960910-?		6E-9				NR [7428630] (imputed)	N
1788	chr4	157714990	157714990	rs373519669	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	4q32.1		rs373519669-TA	NR	4E-9		0.0148	[0.0099-0.0197] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
1788	chr4	157716128	157716129	rs113063027	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	4q32.1	PDGFC	rs113063027-A	0.084459	7E-17		0.033869173	[0.026-0.042] unit decrease	Affymetrix [93095623] (imputed)	N
1788	chr4	157716128	157716129	rs113063027	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	4q32.1	PDGFC	rs113063027-A	0.084469	3E-9		0.023734946	[0.016-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
1788	chr4	157716128	157716129	rs113063027	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	4q32.1	NR	rs113063027-A	0.086366	1E-23		0.032613	[0.026-0.039] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1788	chr4	157720123	157720124	rs4691380	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	4q32.1		rs4691380-T	0.3269	7E-16		0.18271486	[0.14-0.23] mmHg decrease	Affymetrix, Illumina [242865] (imputed)	N
1788	chr4	157720123	157720124	rs4691380	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Hypertension	810,865 European ancestry individuals	354,096 European ancestry individuals	4q32.1		rs4691380-T	0.328	9E-9		5.74395	z score decrease	Affymetrix, Illumina [239843] (imputed)	N
1788	chr4	157720123	157720124	rs4691380	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	4q32.1		rs4691380-T	0.327	2E-12		0.10217639	[0.073-0.131] mmHg decrease	Affymetrix, Illumina [242866] (imputed)	N
1788	chr4	157720123	157720124	rs4691380	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	4q32.1	PDGFC	rs4691380-T	0.4071	1E-8		0.0159	[0.01-0.021] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1788	chr4	157720123	157720124	rs4691380	22581228	Manning AK	2012-05-13	Nat Genet	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting blood insulin (BMI interaction)	Up to 51,750 European ancestry individuals	Up to 33,823 European ancestry individuals	4q32.1	PDGFC	rs4691380-T	0.3305	5E-9		8.326E-4	[-0.00041-0.00208] unit decrease	Affymetrix, Illumina [~ 2400000] (imputed)	N
1788	chr4	157720123	157720124	rs4691380	22581228	Manning AK	2012-05-13	Nat Genet	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting blood insulin	Up to 51,750 European ancestry individuals	Up to 33,823 European ancestry individuals	4q32.1	PDGFC	rs4691380-T	0.3181	6E-7		0.0156	[0.0095-0.0217] unit decrease	Affymetrix, Illumina [~ 2400000] (imputed)	N
1788	chr4	157723707	157723709	rs3042776	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	4q32.1		rs3042776-T	NR	5E-12		0.0193	[0.014-0.025] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
1788	chr4	157725370	157725371	rs113862443	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q32.1	NR	rs113862443-G	0.0794183	1E-12				Affymetrix, Illumina [23467995] (imputed)	N
1788	chr4	157725370	157725371	rs113862443	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	4q32.1	NR	rs113862443-G	0.084693	8E-14		0.025224	[0.019-0.032] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1788	chr4	157733989	157733990	rs10517653	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	4q32.1		rs10517653-?	NR	9E-14				NR [~ 8900000] (imputed)	N
1788	chr4	157733989	157733990	rs10517653	29698431	Roosenboom J	2018-04-26	PLoS One	Mapping genetic variants for cranial vault shape in humans.	Maximum cranial length	4,419 European ancestry individuals	NA	4q32.1	NR	rs10517653-T	0.1397	9E-6		0.4617	[-0.05398-0.97738] unit increase	Illumina [at least 567677] (imputed)	N
1788	chr4	157734674	157734675	rs6822892	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Hypertension	810,865 European ancestry individuals, 21,077 African American individuals, 33,689 South Asian ancestry individuals, 4,586 Hispanic individuals	354,096 European ancestry individuals, 63,282 African American individuals, 4,792 East Asian ancestry individuals, 22,802 Hispanic individuals, 2,695 Native American ancestry individuals	4q32.1		rs6822892-A	0.6298	4E-9		5.89378	z score increase	Affymetrix, Illumina [246710] (imputed)	N
1788	chr4	157734674	157734675	rs6822892	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	HDL cholesterol levels	34,930 East Asian ancestry individuals, 187,167 European ancestry individuals	8,741 Chinese ancestry individuals	4q32.1	PDGFC	rs6822892-A	0.3536	1E-8	(Trans-ethnic initial)	0.019	[0.012-0.026] unit increase (EA Beta values)	Affymetrix, Illumina [~ 1900000] (imputed)	N
1788	chr4	157736534	157736535	rs7657225	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	4q32.1	NR	rs7657225-?	NR	5E-12				Affymetrix [NR]	N
1788	chr4	157745500	157745501	rs36103835	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	4q32.1	NR	rs36103835-T	0.24922200000000005	2E-10		0.00848311	[0.0059-0.0111] unit increase	Affymetrix [16582621] (imputed)	N
1788	chr4	157745500	157745501	rs36103835	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	4q32.1	NR	rs36103835-T	0.24922200000000005	8E-9		0.00804959	[0.0053-0.0108] unit increase	Affymetrix [16582614] (imputed)	N
1788	chr4	157770270	157770271	rs76488803	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	4q32.1		rs76488803-?	NR	5E-13				NR [~ 8900000] (imputed)	N
1788	chr4	157785884	157785885	rs78256087	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	4q32.1		rs78256087-G	NR	6E-11		0.0157	[0.011-0.02] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1788	chr4	157788803	157788804	rs73856768	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	4q32.1	PDGFC	rs73856768-T	0.9195	2E-12		0.0247	[0.018-0.032] unit increase	Affymetrix [18391927] (imputed)	N
1788	chr4	157788803	157788804	rs73856768	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q32.1	NR	rs73856768-C	0.0797358	2E-10				Affymetrix, Illumina [23472807] (imputed)	N
1788	chr4	157788954	157788955	rs342318	29317602	Hall LS	2018-01-10	Transl Psychiatry	Genome-wide meta-analyses of stratified depression in Generation Scotland and UK Biobank.	Major depressive disorder	6,997 European ancestry female cases, 16,172 European ancestry female controls, 3,852 European ancestry male cases, 16,034 European ancestry male controls	NA	4q32.1	PDGFC	rs342318-A	NR	6E-6		0.1	[0.061-0.139] unit increase	Affymetrix, Illumina [7105178] (imputed)	N
1788	chr4	157801751	157801752	rs74408817	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	4q32.1	NR	rs74408817-A	0.08075	2E-11		0.023367	[0.017-0.03] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1788	chr4	157802979	157802981	rs758716456	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	4q32.1		rs758716456-C	NR	2E-9		0.0253	[0.017-0.034] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
1789	chr4	157814335	157814336	rs77987816	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	4q32.1	NR	rs77987816-T	NR	3E-10		0.0289	[0.02-0.038] unit decrease	Affymetrix [9000000] (imputed)	N
1789	chr4	157815949	157815950	rs6812798	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q32.1	NR	rs6812798-C	0.716943	1E-10				Affymetrix, Illumina [24558453] (imputed)	N
1789	chr4	157834829	157834832	rs35096409	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	4q32.1	PDGFC	rs35096409-G	0.520839	2E-9		0.013543308	[0.0091-0.018] unit increase	Affymetrix [93095623] (imputed)	N
1789	chr4	157834829	157834832	rs35096409	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	4q32.1	PDGFC	rs35096409-G	0.520778	4E-12		0.01564374	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1789	chr4	157834829	157834832	rs35096409	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	4q32.1	PDGFC	rs35096409-G	0.520773	4E-10		0.014059574	[0.0096-0.0185] unit increase	Affymetrix [93095623] (imputed)	N
1789	chr4	157836033	157836033	rs35538465	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	4q32.1	PDGFC	rs35538465-GGGAAAGTCT	0.591884	8E-9		0.013106233	[0.0087-0.0176] unit decrease	Affymetrix [93095623] (imputed)	N
1789	chr4	157836033	157836033	rs35538465	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	4q32.1	PDGFC	rs35538465-GGGAAAGTCT	0.591892	1E-9		0.013875057	[0.0094-0.0183] unit decrease	Affymetrix [93095623] (imputed)	N
1789	chr4	157842395	157842396	rs10517660	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	4q32.1		rs10517660-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1789	chr4	157860278	157860279	rs112333071	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Systolic blood pressure (baseline)	5,304 African American individuals	6,500 African American individuals	4q32.1	NR	rs112333071-C	0.2777	7E-7		0.7494	[0.45-1.05] mmHg decrease	Affymetrix, Illumina [NR] (imputed)	N
1789	chr4	157884104	157884105	rs6845322	34074324	Wan JY	2021-06-01	Diabetol Metab Syndr	Genome-wide association analysis of metabolic syndrome quantitative traits in the GENNID multiethnic family study.	High density lipoprotein cholesterol levels	281 African American individuals from 73 families, 516 European ancestry individuals from 75 families, 125 Japanese American individuals from 15 families, 598 Mexican American individuals from 96 families	NA	4q32.1	PDGFC	rs6845322-G	0.4	4E-7	(Hispanic/Latino)	0.1	[0.061-0.139] unit decrease	Illumina [up to 13042663] (imputed)	N
1789	chr4	157894027	157894028	rs79249651	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q32.1	NR	rs79249651-T	0.02091	2E-8	(SERPINA3)	0.1496	NR unit increase	Illumina [1671387] (imputed)	N
1790	chr4	157945186	157945187	rs2343732	28078323	Raj T	2016-12-21	Neurol Genet	Genetic architecture of age-related cognitive decline in African Americans.	Cognitive decline (age-related)	3,964 African American ancestry individuals.	NA	4q32.1	PDGFC, GLRB	rs2343732-?		6E-6		0.007	unit decrease	Illumina [13900000] (imputed)	N
1790	chr4	157951524	157951525	rs11729279	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DNAJB2	5,340 Icelandic ancestry individuals	NA	4q32.1		rs11729279-T	0.205	2E-22		0.197045	[0.16-0.24] unit increase	Illumina [7506463] (imputed)	N
1790	chr4	157994041	157994042	rs11100093	31806883	de Las Fuentes L	2019-12-06	Pharmacogenomics J	Genome-wide meta-analysis of variant-by-diuretic interactions as modulators of lipid traits in persons of European and African ancestry.	Triglyceride levels x loop diuretics use interaction	2,117 European ancestry exposed individuals, 30,715 European ancestry unexposed individuals, 784 African American and African ancestry exposed individuals, 5,218 African American and African ancestry unexposed individuals	NA	4q32.1	PDGFC, GLRB, GRIA2	rs11100093-?	NR	2E-6		0.0104	[0.01-0.011] mmol/L increase	Affymetrix, Illumina [NR] (imputed)	N
1790	chr4	158041033	158041034	rs185017708	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q32.1	NR	rs185017708-C	0.01394	9E-11	(SERPINA3)	0.1971	NR unit increase	Illumina [1671387] (imputed)	N
1793	chr4	158372372	158372372	rs71602302	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	4q32.1		rs71602302-GT	NR	7E-9		0.0143	[0.0094-0.0192] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1794	chr4	158473448	158473449	rs2014197	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	7,894 Sub-Saharan African ancestry individuals	NA	4q32.1		rs2014197-G	0.446827	4E-6		0.00879133	[0.0051-0.0125] unit decrease	Illumina [13900000] (imputed)	N
1794	chr4	158530862	158530863	rs6842817	28322283	Chibnik LB	2017-03-21	Mol Psychiatry	Susceptibility to neurofibrillary tangles: role of the PTPRD locus and limited pleiotropy with other neuropathologies.	Cerebral amyloid angiopathy	404 European ancestry mild cases, 209 European ancestry moderate cases, 113 European ancestry severe cases, 183 European ancestry controls	369 individuals	4q32.1		rs6842817-C	0.08	6E-6	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1795	chr4	158607382	158607383	rs9995419	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Ease of getting up in the morning	385,949 European ancestry individuals	NA	4q32.1	NR	rs9995419-A	0.2369	2E-8		0.0114	[0.0075-0.0153] unit increase	Affymetrix, Illumina [10862568] (imputed)	N
1797	chr4	158860185	158860186	rs56188374	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	4q32.1	Intergenic	rs56188374-A	0.0835	2E-8	(MTAG)	0.0138	[0.0089-0.0187] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1797	chr4	158919486	158919487	rs7673290	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	4q32.1		rs7673290-?	NR	1E-7				NR [~ 8900000] (imputed)	N
1798	chr4	159098783	159098784	rs13126694	28360221	Boger CA	2017-03-30	J Am Soc Nephrol	NFAT5 and SLC4A10 Loci Associate with Plasma Osmolality.	Blood osmolality (transformed sodium)	45,889 European ancestry individuals, up to 8,765 Asian Indian ancestry individuals, up to 7,215 African ancestry individuals	17,637 European ancestry individuals	4q32.1	NR	rs13126694-A	0.63	9E-6	(Asian)	0.08	[0.047-0.113] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1799	chr4	159150357	159150358	rs184145372	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	4q32.1	TMEM144	rs184145372-T		2E-8		5.776	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1799	chr4	159155218	159155219	rs115952334	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MMP7	5,359 Icelandic ancestry individuals	NA	4q32.1		rs115952334-C	0.01344	1E-12		0.109053	[0.079-0.139] unit increase	Illumina [7506463] (imputed)	N
1799	chr4	159178374	159178375	rs115320831	27992416	Lane JM	2016-12-19	Nat Genet	Genome-wide association analyses of sleep disturbance traits identify new loci and highlight shared genetics with neuropsychiatric and metabolic traits.	Excessive daytime sleepiness	111,648 European ancestry individuals	NA	4q32.1	TMEM144	rs115320831-A	0.702	4E-7		0.024	[0.014-0.034] unit increase	Affymetrix [up to 73355677] (imputed)	N
1800	chr4	159277557	159277558	rs12501491	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	4q32.1	RXFP1	rs12501491-T	0.9316	5E-7		0.0701	[0.043-0.097] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1800	chr4	159311753	159311754	rs115348904	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota (beta diversity)	858 Metropolitan French ancestry individuals	NA	4q32.1	NR	rs115348904-T	0.041	7E-7	(Jaccard metric)	4.8124323	NR z-score increase	Illumina [5293637] (imputed)	N
1801	chr4	159444313	159444314	rs936094	22076464	Ellinghaus E	2011-11-11	Leukemia	Identification of germline susceptibility loci in ETV6-RUNX1-rearranged childhood acute lymphoblastic leukemia.	Acute lymphoblastic leukemia (childhood)	419 European ancestry ETV6-RUNX1 positive cases, 474 European ancestry controls	951 European ancestry ETV6-RUNX1 positive cases, 326 European ancestry ETV6-RUNX1 negative cases, 3,061 European ancestry controls	4q32.1	RXFP1	rs936094-C	0.17	1E-6	(ETV6-RUNX1 positive, Northern European)			Affymetrix [355750]	N
1802	chr4	159621184	159621185	rs6856561	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	4q32.1	ETFDH	rs6856561-A	0.844299	9E-16	(decanoylcarnitine (C10))	0.254	[0.19-0.32] unit increase	Illumina [13039987] (imputed)	N
1802	chr4	159621184	159621185	rs6856561	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	4q32.1	ETFDH	rs6856561-A	0.844299	2E-17	(octanoylcarnitine (C8))	0.269	[0.21-0.33] unit increase	Illumina [13039987] (imputed)	N
1802	chr4	159621727	159621728	rs200200955	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	4q32.1	ETFDH	rs200200955-A	0.8747	5E-8	(C10)	0.178	[0.11-0.24] unit increase	Illumina [~ 47000000] (imputed)	N
1802	chr4	159629150	159629151	rs4690909	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite ratios	Up to 5,591 European ancestry individuals	Up to 1,767 European ancestry individuals	4q32.1	ETFDH	rs4690909-C	0.69	2E-57	(octanoylcarnitine/X-13435)	0.056	[0.048-0.064] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
1802	chr4	159629813	159629814	rs17843966	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PPID	5,365 Icelandic ancestry individuals	NA	4q32.1		rs17843966-C	0.2554	5E-86		0.415509	[0.37-0.46] unit increase	Illumina [7506463] (imputed)	N
1802	chr4	159629813	159629814	rs17843966	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q32.1	PPID	rs17843966-A	0.74328125	2E-50	(PPID, 5202_4_3)	0.41477525	[0.36-0.47] unit decrease	Illumina [> 1000000] (imputed)	N
1802	chr4	159630816	159630817	rs8396	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	4q32.1	PPID, ETFDH, U3	rs8396-C	0.2864372	3E-26	(EA, Peptidyl-prolyl cis-trans isomerase D)	0.5011	[0.41-0.59] unit increase	Affymetrix [509946]	N
1802	chr4	159630816	159630817	rs8396	26068415	Draisma HHM	2015-06-12	Nat Commun	Genome-wide association study identifies novel genetic variants contributing to variation in blood metabolite levels.	Acylcarnitine levels	up to 7,478 European ancestry individuals	1,182 European ancestry individuals	4q32.1	ETFDH, C4orf46	rs8396-T	0.7182	3E-14	(Octanoylcarnitine)	0.0794	[0.059-0.1] unit increase	Affymetrix, Illumina [at least 296619] (imputed)	N
1802	chr4	159630816	159630817	rs8396	26068415	Draisma HHM	2015-06-12	Nat Commun	Genome-wide association study identifies novel genetic variants contributing to variation in blood metabolite levels.	Acylcarnitine levels	up to 7,478 European ancestry individuals	1,182 European ancestry individuals	4q32.1	ETFDH, C4orf46	rs8396-T	0.7163	2E-18	(Decanoylcarnitine)	0.1028	[0.08-0.126] unit increase	Affymetrix, Illumina [at least 296619] (imputed)	N
1802	chr4	159630816	159630817	rs8396	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	4q32.1	ETFDH	rs8396-T	0.7	9E-38	(decanoylcarnitine)	0.053	[0.045-0.061] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
1802	chr4	159630816	159630817	rs8396	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	4q32.1	ETFDH	rs8396-T	0.7	9E-13	(cis-4-decenoyl carnitine)	0.026	[0.018-0.034] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
1802	chr4	159630816	159630817	rs8396	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	4q32.1	ETFDH	rs8396-T	0.7	1E-31	(octanoylcarnitine)	0.048	[0.04-0.056] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
1802	chr4	159630816	159630817	rs8396	23093944	Krumsiek J	2012-10-18	PLoS Genet	Mining the unknown: a systems approach to metabolite identification combining genetic and metabolic information.	Serum metabolite levels	1,678 European ancestry individuals	NA	4q32.1	ETFDH, PPID	rs8396-?	NR	5E-12	(octanoylcarnitine)	0.04802	[NR] unit decrease	Affymetrix [655658]	N
1802	chr4	159630816	159630817	rs8396	23093944	Krumsiek J	2012-10-18	PLoS Genet	Mining the unknown: a systems approach to metabolite identification combining genetic and metabolic information.	Serum metabolite levels	1,678 European ancestry individuals	NA	4q32.1	ETFDH, PPID	rs8396-?	NR	2E-12	(decanoylcarnitine)	0.05031	[NR] unit decrease	Affymetrix [655658]	N
1802	chr4	159630816	159630817	rs8396	21886157	Suhre K	2011-08-31	Nature	Human metabolic individuality in biomedical and pharmaceutical research.	Metabolic traits	2,820 European ancestry individuals	NA	4q32.1	ETFDH	rs8396-C	0.304	6E-15	(decanoylcarnitine + 25 other traits)	0.098	[NR] unit decrease	Affymetrix, Illumina [534665]	N
1802	chr4	159630816	159630817	rs8396	20037589	Illig T	2009-12-27	Nat Genet	A genome-wide perspective of genetic variation in human metabolism.	Metabolite levels	1,029 European ancestry individuals	1,202 European ancestry individuals	4q32.1	ETFDH	rs8396-T	NR	4E-24	(C14:1-OH/C10)	0.102	[NR] unit increase	Affymetrix [517480]	N
1803	chr4	159651874	159651875	rs28600726	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	4q32.1	PPID	rs28600726-?	NR	2E-8		0.011445643	[0.0074-0.0154] unit increase	NR [7306098]	N
1803	chr4	159651874	159651875	rs28600726	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	4q32.1		rs28600726-?	NR	8E-9				NR [~ 8900000] (imputed)	N
1803	chr4	159654763	159654764	rs115851413	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (lymphocyte)	16,201 African American or Afro-Caribbean individuals	NA	4q32.1		rs115851413-A	0.0163	3E-8		0.3535	[0.23-0.48] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1803	chr4	159667112	159667113	rs6858519	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	4q32.1	NR	rs6858519-C	0.3726	5E-8				NR [9056863] (imputed)	N
1803	chr4	159668167	159668168	rs11726992	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	4q32.1		rs11726992-T	0.6455	3E-7		35.983162	z score increase	NR [6814003]	N
1803	chr4	159676255	159676255	rs35280105	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first birth	542,901 European ancestry individuals	NA	4q32.1	FNIP2	rs35280105-C	0.6319	1E-8		0.0603	[0.04-0.081] unit increase	NR [9744772] (imputed)	N
1803	chr4	159705839	159705840	rs11933662	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	4q32.1		rs11933662-A	0.38	5E-9		5.84	z score increase	Affymetrix [9061022] (imputed)	N
1803	chr4	159719954	159719955	rs76610881	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	4q32.1	NR	rs76610881-G	NR	7E-25		0.0418	[0.034-0.05] unit increase	Affymetrix [9000000] (imputed)	N
1803	chr4	159726344	159726345	rs4130344	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	4q32.1	NR	rs4130344-?	NR	5E-6		4.549	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1803	chr4	159726344	159726345	rs4130344	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	4q32.1	FNIP2	rs4130344-T	NR	2E-9		0.017704632	[0.012-0.023] unit decrease	Affymetrix [NR]	N
1803	chr4	159732702	159732703	rs4318611	27046643	Davies G	2016-04-05	Mol Psychiatry	Genome-wide association study of cognitive functions and educational attainment in UK Biobank (N=112 151).	Educational attainment	111,114 European ancestry individuals	NA	4q32.1	FNIP2	rs4318611-?	NR	2E-9		0.0287954	[NR] unit increase	Affymetrix [~ 17300000] (imputed)	N
1804	chr4	159779240	159779241	rs6828666	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Depression	105,739 European ancestry individuals, 16,471 European ancestry major depressive disorder cases, 58,835 European ancestry controls	368,890 European ancestry individuals	4q32.1	NR	rs6828666-A	NR	3E-6		4.6532216	[NR] z score decrease	Affymetrix [up to 6544862] (imputed)	N
1804	chr4	159787658	159787659	rs34615736	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	4q32.1	FNIP2	rs34615736-T	0.4306	1E-11		0.013804044	[0.0098-0.0178] unit increase	Affymetrix [up to 18485882] (imputed)	N
1804	chr4	159802110	159802111	rs13148521	33563987	Tyrrell J	2021-02-09	Nat Commun	Genetic predictors of participation in optional components of UK Biobank.	Acceptance of an invitation to participate in a mental health questionnaire	146,074 European ancestry cases, 148,713 European ancestry controls	NA	4q32.1	NR	rs13148521-A	0.62	6E-9		1.03	[1.02, 1.04]	Affymetrix [39302896] (imputed)	N
1804	chr4	159802266	159802267	rs35189787	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Coffee consumption	335,909 European ancestry individuals	39,924 European ancestry individuals	4q32.1	FNIP2	rs35189787-T	0.1893	2E-6		0.0089	[0.0052-0.0126] unit increase	Affymetrix [~ 7740000] (imputed)	N
1804	chr4	159831396	159831397	rs6536374	34006833	Elvsashagen T	2021-05-18	Nat Commun	The genetic architecture of the human thalamus and its overlap with ten common brain disorders.	Intralaminar thalamic nuclei volume	30,114 white British ancestry individuals			C4orf45	rs6536374-T	0.3811	2E-10		0.0535481	[0.037-0.07] unit decrease	Affymetrix [8165723] (imputed)	N
1804	chr4	159833054	159833055	rs4691522	33563987	Tyrrell J	2021-02-09	Nat Commun	Genetic predictors of participation in optional components of UK Biobank.	Participation in an health questionnaire (not invited vs invited)	336,633 European ancestry cases, 114,464 European ancestry controls	NA	4q32.1	NR	rs4691522-A	0.381774	9E-12		1.006	[1.004, 1.008]	Affymetrix [39302896] (imputed)	N
1804	chr4	159834473	159834474	rs78890745	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	4q32.1	NR	rs78890745-A	0.10883200000000004	2E-37		0.0170398	[0.014-0.02] unit increase	Affymetrix [16582909] (imputed)	N
1804	chr4	159834473	159834474	rs78890745	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	4q32.1	NR	rs78890745-A	0.10879499999999998	2E-25		0.0202438	[0.016-0.024] unit increase	Affymetrix [16585854] (imputed)	N
1804	chr4	159834473	159834474	rs78890745	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	4q32.1	NR	rs78890745-A	0.108873	6E-14		0.0136981	[0.01-0.017] unit increase	Affymetrix [16582621] (imputed)	N
1804	chr4	159834473	159834474	rs78890745	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	4q32.1	NR	rs78890745-A	0.10883200000000004	9E-32		0.0178018	[0.015-0.021] unit increase	Affymetrix [16582965] (imputed)	N
1804	chr4	159834473	159834474	rs78890745	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	4q32.1	NR	rs78890745-A	0.10879499999999998	6E-22		0.0217863	[0.017-0.026] unit increase	Affymetrix [16585866] (imputed)	N
1804	chr4	159834473	159834474	rs78890745	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	4q32.1	NR	rs78890745-A	0.108873	9E-12		0.0136529	[0.0098-0.0175] unit increase	Affymetrix [16582614] (imputed)	N
1804	chr4	159839409	159839410	rs10011224	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	4q32.1		rs10011224-G	0.37	5E-19		8.9	z score increase	Affymetrix [9061022] (imputed)	N
1804	chr4	159842376	159842377	rs2116597	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	4q32.1	NR	rs2116597-?	NR	7E-6		4.504	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1804	chr4	159856738	159856739	rs2068625	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (computer use)	408,815 European ancestry individuals	NA	4q32.1	NR	rs2068625-?		4E-11		0.0158375	[0.011-0.021] unit decrease	Affymetrix [19400418] (imputed)	N
1804	chr4	159857818	159857819	rs7693082	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	4q32.1	NR	rs7693082-?		2E-10		0.0150716	[0.01-0.02] unit increase	Affymetrix [19400418] (imputed)	N
1804	chr4	159858735	159858736	rs11737459	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	4q32.1	Intergenic	rs11737459-A	0.6982	1E-14	(MTAG)	0.0139	[0.01-0.017] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1804	chr4	159858735	159858736	rs11737459	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	4q32.1	Intergenic	rs11737459-A	0.6983	3E-11	(MTAG)	0.0166	[0.012-0.021] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1804	chr4	159862819	159862820	rs2081651	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability (MTAG)	436,124 European ancestry individuals	NA	4q32.1	C4orf45	rs2081651-?	NR	3E-8		5.527	z score decrease	Affymetrix, Illumina, Perlegen [7333576] (imputed)	N
1804	chr4	159862912	159862913	rs2081652	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	4q32.1		rs2081652-A	0.661	1E-16		0.0123	[0.0094-0.0152] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1804	chr4	159862912	159862913	rs2081652	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	4q32.1	Intergenic	rs2081652-A	0.661	3E-17	(MTAG)	0.0117	[0.009-0.0144] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1804	chr4	159863381	159863382	rs17287504	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	4q32.1		rs17287504-T	0.2906	1E-15	(conditional-joint)	0.0124	[0.0095-0.0153] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1804	chr4	159863648	159863649	rs7675394	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	4q32.1		rs7675394-?	NR	3E-14				NR [~ 8900000] (imputed)	N
1804	chr4	159871165	159871166	rs17287714	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	4q32.1	NR	rs17287714-T	0.881885	4E-8		0.0220873	[0.014-0.03] unit increase	Affymetrix [16585745] (imputed)	N
1804	chr4	159873195	159873196	rs1820510	32752121	Nedoszytko B	2020-07-31	Int J Mol Sci	Results from a Genome-Wide Association Study (GWAS) in Mastocytosis Reveal New Gene Polymorphisms Associated with WHO Subgroups.	Systemic mastocytosis	93 European ancestry cases, 5,606 European ancestry controls	NA	4q32.1	C4orf45	rs1820510-A	0.02863	6E-8		3.635	[3.14-4.13]	Illumina [281811]	N
1804	chr4	159881327	159881328	rs978297	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	4q32.1	Intergenic	rs978297-T	0.7198	2E-11	(MTAG)	0.0133	[0.0094-0.0172] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1804	chr4	159881327	159881328	rs978297	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	4q32.1	Intergenic	rs978297-T	0.7198	2E-9		0.013	[0.0087-0.0173] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1804	chr4	159892992	159892993	rs77272671	33536081	Hu J	2021-02-03	Hum Genomics	Genetic variants are identified to increase risk of COVID-19 related mortality from UK Biobank data.	Mortality in COVID-19	292 European ancestry cases, 804 European ancestry controls	NA	4q32.1	NR	rs77272671-?	NR	1E-5				NR [18617478] (imputed)	N
1805	chr4	159994390	159994391	rs62337430	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	4q32.1		rs62337430-A	NR	4E-9		0.0086	[0.0057-0.0115] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1805	chr4	160022195	160022196	rs563875	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	4q32.1		rs563875-?	NR	4E-10				NR [~ 8900000] (imputed)	N
1806	chr4	160039494	160039495	rs145186794	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	4q32.1	intergenic	rs145186794-A	0.9886	9E-6		0.1419	[0.079-0.205] unit decrease	NR [8041861] (imputed)	N
1806	chr4	160088136	160088137	rs7656697	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	4q32.1	FLJ25371	rs7656697-?	NR	7E-6	(PC 40:6)	0.1526237	[0.086-0.219] unit increase	Affymetrix [at least 2500000] (imputed)	N
1807	chr4	160282717	160282718	rs6536413	23358156	Benyamin B	2013-01-29	Mol Psychiatry	Childhood intelligence is heritable, highly polygenic and associated with FNBP1L.	Intelligence (childhood)	12,441 European ancestry children	5,548 European ancestry children	4q32.1	NR	rs6536413-A	0.13	6E-6		0.075	[0.042-0.108] unit decrease	Affymetrix, Illumina [138093] (imputed)	N
1808	chr4	160353221	160353222	rs2699039	28701861	Randall CL	2017-06-15	Pain Res Manag	A Preliminary Genome-Wide Association Study of Pain-Related Fear: Implications for Orofacial Pain.	Fear of minor pain	Up to 1,367 European ancestry individuals, up to 159 African American individuals, up to 13 Hispanic individuals, up to 23 Asian, Native American and other ancestry individuals, up to 21 individuals	NA	4q32.1	NR	rs2699039-A	0.02	4E-7		2.54	unit decrease	Illumina [8591557] (imputed)	N
1808	chr4	160374254	160374255	rs11947461	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Chloroflexales abundance in stool	5,959 Finnish ancestry individuals	NA	4q32.1		rs11947461-T	0.393235	3E-8		0.0205596	[0.013-0.028] unit increase	Illumina [7980478] (imputed)	N
1808	chr4	160402299	160402300	rs538785537	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	4q32.1	NR	rs538785537-?	NR	6E-7		1.3422	[0.82-1.87] unit increase	NR [13958389] (imputed)	N
1809	chr4	160473545	160473546	rs7693485	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	4q32.1	U3	rs7693485-C	0.4754	6E-9		0.011765986	[0.0078-0.0157] unit increase	Affymetrix [up to 18485882] (imputed)	N
1809	chr4	160477040	160477041	rs11100237	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	4q32.1		rs11100237-A	0.5242	8E-13		0.0101	[0.0074-0.0128] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1809	chr4	160477040	160477041	rs11100237	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	4q32.1	Intergenic	rs11100237-A	0.5242	1E-12	(MTAG)	0.0093	[0.0068-0.0118] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1809	chr4	160480532	160480533	rs4339163	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	4q32.1		rs4339163-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1809	chr4	160485390	160485391	rs4691576	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	4q32.1	NR	rs4691576-?	NR	4E-6		4.625	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1809	chr4	160494829	160494830	rs998888	33562295	Coltell O	2021-02-07	Nutrients	Circulating Adiponectin and Its Association with Metabolic Traits and Type 2 Diabetes: Gene-Diet Interactions Focusing on Selected Gene Variants and at the Genome-Wide Level in High-Cardiovascular Risk Mediterranean Subjects.	Adiponectin levels	954 European ancestry high cardiovascular risk elderly individuals	NA	4q32.1	LOC107986324	rs998888-T	0.097	8E-6		0.215	[NR] unit increase	Illumina [625127]	N
1810	chr4	160599340	160599341	rs4691601	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	4q32.1		rs4691601-A	0.4571	2E-16		0.0115	[0.0088-0.0142] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1810	chr4	160599340	160599341	rs4691601	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	4q32.1	Intergenic	rs4691601-A	0.4571	4E-19	(MTAG)	0.0118	[0.0093-0.0143] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1810	chr4	160599956	160599957	rs1393578	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	4q32.1	Intergenic	rs1393578-T	0.5382	3E-17	(MTAG)	0.014	[0.011-0.017] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1810	chr4	160599956	160599957	rs1393578	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	4q32.1	Intergenic	rs1393578-T	0.5376	6E-13	(MTAG)	0.0165	[0.012-0.021] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1810	chr4	160602068	160602069	rs7691443	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	4q32.1	Intergenic	rs7691443-T	0.463	8E-12	(MTAG)	0.0123	[0.0088-0.0158] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1810	chr4	160608842	160608843	rs1393579	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	4q32.1	NR	rs1393579-?	NR	1E-6		4.814	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1810	chr4	160611187	160611188	rs6826473	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	4q32.1	Intergenic	rs6826473-T	0.5694	7E-9		0.0114	[0.0075-0.0153] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1810	chr4	160630205	160630206	rs17038704	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	4q32.1	NR	rs17038704-?	NR	1E-6				Affymetrix [NR]	N
1811	chr4	160742790	160742791	rs6811354	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	4q32.1	NR	rs6811354-?		7E-6	(CCL18)	0.3527	[NR] unit increase	Illumina [NR]	N
1813	chr4	161028816	161028817	rs17261688	23725790	Renteria ME	2013-06-03	Twin Res Hum Genet	GWAS of DNA methylation variation within imprinting control regions suggests parent-of-origin association.	DNA methylation (variation)	256 European ancestry individuals	384 European ancestry individuals	4q32.1	intergenic	rs17261688-G	0.12	3E-6	(NESPAS-ICR)			Illumina [515966]	N
1813	chr4	161068506	161068507	rs13127767	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	4q32.1	RAPGEF2	rs13127767-G	0.478106	5E-8	(-312 ms)	0.0310121	[0.02-0.042] unit decrease	Affymetrix [10000000] (imputed)	N
1813	chr4	161072021	161072022	rs76098257	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	4q32.1	NR	rs76098257-T	NR	2E-7	(GEE model)	0.87288	[0.55-1.2] unit decrease	NR [NR] (imputed)	N
1815	chr4	161236140	161236141	rs35322806	30196971	Bray MJ	2018-09-01	Fertil Steril	Transethnic and race-stratified genome-wide association study of fibroid characteristics in African American and European American women.	Uterine fibroid number (single vs multiple)	636 African American or European ancestry female individuals with single fibroid, 822 African American or European ancestry female individuals with multiple fibroids	NA	4q32.1	RAPGEF2, FSTL5	rs35322806-A	0.79	2E-7	(AA)	2.2727273	[1.67-3.12]	Affymetrix [up to 9627525] (imputed)	N
1815	chr4	161256145	161256146	rs10000513	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	4q32.1	NR	rs10000513-?	NR	4E-8				Illumina [7760689] (imputed)	N
1815	chr4	161274562	161274563	rs187475560	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-17 levels	7,760 Finnish ancestry individuals	NA	4q32.1	NR	rs187475560-C		3E-6		0.2434	[0.14-0.35] SD units increase	NR [10700000] (imputed)	N
1815	chr4	161276077	161276078	rs72693493	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Diastolic blood pressure (long-term average)	5,304 African American individuals	6,500 African American individuals	4q32.1	NR	rs72693493-T	0.0832	1E-6		0.9899	[0.59-1.39] mmHg decrease	Affymetrix, Illumina [NR] (imputed)	N
1816	chr4	161373196	161373197	rs145030395	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 12, vertical position of sublabial sulcus relative to central midface)	2,187 European ancestry individuals	NA	4q32.1	NR	rs145030395-A	0.007113	4E-6		0.8365	[0.48-1.19] unit increase	Illumina [10677593] (imputed)	N
1816	chr4	161470473	161470474	rs9790464	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Precentral gyrus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	4q32.1	NR	rs9790464-?		1E-6				Illumina [4322238] (imputed)	N
1816	chr4	161472908	161472909	rs17355669	31586183	Niazi Y	2019-10-04	Mutagenesis	Distinct pathways associated with chromosomal aberration frequency in a cohort exposed to genotoxic compounds compared to general population.	High chromosomal aberration frequency (total)	342 European and unknown ancestry genotoxic compound-exposed cases, 265 European and unknown ancestry genotoxic compound-exposed controls,255 European and unknown ancestry unexposed cases, 611 European and unknown ancestry unexposed controls	NA	4q32.1	NR	rs17355669-?	NR	8E-6		1.8181818	[NR]	Illumina [> 2600000] (imputed)	N
1817	chr4	161506896	161506897	rs17291045	20041166	Fellay J	2009-12-24	PLoS Genet	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	4q32.1	intergenic	rs17291045-?	NR	5E-8	(progression)			Illumina [NR]	N
1817	chr4	161574882	161574883	rs144758183	31586183	Niazi Y	2019-10-04	Mutagenesis	Distinct pathways associated with chromosomal aberration frequency in a cohort exposed to genotoxic compounds compared to general population.	High chromosomal aberration frequency (total)	342 European and unknown ancestry genotoxic compound-exposed cases, 265 European and unknown ancestry genotoxic compound-exposed controls,255 European and unknown ancestry unexposed cases, 611 European and unknown ancestry unexposed controls	NA	4q32.1	NR	rs144758183-?	NR	3E-6		1.923077	[NR]	Illumina [> 2600000] (imputed)	N
1818	chr4	161625820	161625821	rs78758335	34269803	Casto A	2021-07-16	Blood	Genetic Variants Associated with Cytomegalovirus Infection after Allogeneic Hematopoietic Cell Transplantation.	Cytomegalovirus high-level reactivation after allogeneic hematopoietic cell transplantation (recipients)	up to 1,301 European ancestry recipients	up to 868 European ancestry recipients	4q32.1		rs78758335-?	NR	7E-7		0.59	[0.47-0.73]	Affymetrix, Illumina [29826485] (imputed)	N
1818	chr4	161659384	161659385	rs3908007	32358372	Ouyang H	2020-05-01	Medicine (Baltimore)	Constructing gene network for type 1 narcolepsy based on genome-wide association study and differential gene expression analysis (STROBE).	Narcolepsy with cataplexy	903 Chinese ancestry cases, 1,982 Chinese ancestry controls	NA	4q32.1	NR	rs3908007-?	NR	4E-6		0.7397	[0.6511-0.8475]	Affymetrix [237955] (imputed)	N
1818	chr4	161670540	161670541	rs137917103	30583798	Bovijn J	2018-12-21	Am J Hum Genet	GWAS Identifies Risk Locus for Erectile Dysfunction and Implicates Hypothalamic Neurobiology and Diabetes in Etiology.	Erectile dysfunction	6,175 European ancestry male cases, 217,630 European ancestry male controls	NA	4q32.1	NR	rs137917103-?	NR	4E-6				Affymetrix, Illumina [at least 807411] (imputed)	N
1818	chr4	161694896	161694897	rs115981586	29317602	Hall LS	2018-01-10	Transl Psychiatry	Genome-wide meta-analyses of stratified depression in Generation Scotland and UK Biobank.	Major depressive disorder	6,997 European ancestry female cases, 16,172 European ancestry female controls, 3,852 European ancestry male cases, 16,034 European ancestry male controls	NA	4q32.1	intergenic	rs115981586-A	NR	8E-6		0.21	[0.11-0.31] unit increase	Affymetrix, Illumina [7105178] (imputed)	N
1819	chr4	161815981	161815982	rs34361130	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Rapid automised naming of letters	2,563 European ancestry individuals	NA	4q32.2	Intergenic	rs34361130-C	0.845801429	7E-6		0.203472	[0.11-0.29] unit increase	Illumina [6952813] (imputed)	N
1820	chr4	161910455	161910456	rs187147685	31014085	Welsh P	2019-04-24	Circulation	Cardiac Troponin T and Troponin I in the General Population: Comparing and Contrasting their Genetic Determinants and Associations with Outcomes.	Cardiac troponin-I levels	14,579 European ancestry individuals	NA	4q32.2	Intergenic	rs187147685-T		4E-7		0.652	[NR] unit increase	Illumina [24111857] (imputed)	N
1821	chr4	162091638	162091639	rs6536575	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	4q32.2		rs6536575-?	NR	6E-12				NR [~ 8900000] (imputed)	N
1821	chr4	162097201	162097202	rs1255831	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	4q32.2		rs1255831-C	NR	2E-9		0.0139	[0.0094-0.0184] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1821	chr4	162129843	162129844	rs13110266	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	4q32.2	NR	rs13110266-?	NR	2E-11				Affymetrix [~ 8270000] (imputed)	N
1821	chr4	162129843	162129844	rs13110266	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	4q32.2	NA	rs13110266-A	0.4037	4E-14		0.0124	[0.0093-0.0155] unit decrease	NR [~ 27400000] (imputed)	N
1821	chr4	162129843	162129844	rs13110266	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	4q32.2	NA	rs13110266-A	0.4037	4E-14		0.0124	[0.0093-0.0155] unit decrease	NR [~ 27400000] (imputed)	N
1821	chr4	162132757	162132758	rs6843852	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		4q32.2	FSTL5	rs6843852-C	0.492297	2E-10		0.00871909	[0.006-0.0114] unit decrease	Affymetrix [12370749]	N
1822	chr4	162155449	162155450	rs76873624	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	4q32.2	NR	rs76873624-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
1822	chr4	162173479	162173480	rs7676384	22952603	Hart AB	2012-08-28	PLoS One	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 10 individuals	NA	4q32.2	intergenic	rs7676384-?	NR	8E-6	(SF4)			Affymetrix [5476100] (imputed)	N
1822	chr4	162250931	162250932	rs4470583	21310492	Huang YC	2011-02-08	Ophthalmology	Genome-wide association study of diabetic retinopathy in a Taiwanese population.	Diabetic retinopathy	174 Han Chinese ancestry Type 2 diabetes cases, 575 Han Chinese ancestry Type 2 diabetes controls, 100 Han Chinese ancestry non-diabetic controls	NA	4q32.2	intergenic	rs4470583-A	NR	4E-7				Illumina [~ 550000]	N
1823	chr4	162279384	162279385	rs17395886	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar I disorder	14,879 European ancestry cases, 31,358 European ancestry controls	NA	4q32.2	NR	rs17395886-C	0.836	3E-7		1.1139331	[NR]	NR [9372253] (imputed)	N
1823	chr4	162285365	162285366	rs17396139	29907492	Nakahara S	2018-06-12	Schizophr Res	Polygenic risk score, genome-wide association, and gene set analyses of cognitive domain deficits in schizophrenia.	Working memory	2 Alaskan native ancestry schizophrenia cases, 18 Asian ancestry schizophrenia cases, 20 African American schizophrenia cases, 1 Native Hawaiian ancestry schizophrenia cases, 86 European ancestry schizophrenia cases, 2 Alaskan native ancestry controls, 10 Asian ancestry controls, 17 African American controls, 1 Native Hawaiian ancestry controls, 106 European ancestry controls	NA	4q32.2	intergenic	rs17396139-C		4E-7		0.42	[NR] unit decrease	Illumina [NR] (imputed)	N
1823	chr4	162294037	162294038	rs11724116	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Bipolar disorder vs major depressive disorder (ordinary least squares (OLS))	20,352 bipolar disorder cases, 170,756 major depressive disorder cases	NA	4q32.2		rs11724116-?	NR	1E-8		0.0157	NR unit decrease	NR [6265453] (imputed)	N
1823	chr4	162294037	162294038	rs11724116	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Bipolar disorder vs autism spectrum disorder (ordinary least squares (OLS))	20,352 bipolar disorder cases, 18,381 autism spectrum disorder cases	NA	4q32.2		rs11724116-?	NR	3E-8		0.0179	NR unit decrease	NR [6135876] (imputed)	N
1823	chr4	162294037	162294038	rs11724116	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	4q32.2	FSTL5	rs11724116-C	0.84	2E-8		1.0887198		NR [9372253] (imputed)	N
1823	chr4	162300130	162300131	rs79360559	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Bipolar disorder vs ADHD (ordinary least squares (OLS))	20,352 bipolar disorder cases, 19,099 ADHD cases	NA	4q32.2		rs79360559-?	NR	2E-9		0.0212	NR unit decrease	NR [5637374] (imputed)	N
1823	chr4	162341963	162341964	rs181957530	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	4q32.2	FSTL5	rs181957530-?	NR	2E-6	(Conditioned on rs11724116)			NR [9372253] (imputed)	N
1823	chr4	162341963	162341964	rs181957530	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar I disorder	14,879 European ancestry cases, 31,358 European ancestry controls	NA	4q32.2	NR	rs181957530-C	0.016000000000000014	3E-7		1.3703886	[NR]	NR [9372253] (imputed)	N
1825	chr4	162602208	162602209	rs17638464	20966902	Croteau-Chonka DC	2010-10-21	Obesity (Silver Spring)	Genome-wide association study of anthropometric traits and evidence of interactions with age and study year in Filipino women.	Height	1,792 Filipino ancestry females	NA	4q32.2	FSTL5	rs17638464-G	0.83	2E-6		1.38	[0.81-1.95] cm increase	Affymetrix [2073674] (imputed)	N
1825	chr4	162633718	162633719	rs116376586	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque score in type 2 diabetes	691 African American individuals	205 African American individuals	4q32.2	FSTL5	rs116376586-?	NR	8E-6		0.928	[0.4-1.46] unit decrease	Illumina [at least 13000000] (imputed)	N
1826	chr4	162663105	162663106	rs10517752	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Suicide attempts	3,470 European ancestry cases, 150,090 European ancestry controls	NA	4q32.2	NR	rs10517752-G	0.1	3E-6		1.8518518	[-0.38255-4.08625]	Affymetrix [at least 143006] (imputed)	N
1826	chr4	162663774	162663775	rs28647531	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Suicide attempts	3,470 European ancestry cases, 150,090 European ancestry controls	NA	4q32.2	NR	rs28647531-A	0.1	2E-6		1.8518518	[-0.38255-4.08625]	Affymetrix [at least 143006] (imputed)	N
1826	chr4	162673378	162673379	rs553959375	30287806	Zhou H	2018-10-04	Transl Psychiatry	Genome-wide association study identifies glutamate ionotropic receptor GRIA4 as a risk gene for comorbid nicotine dependence and major depression.	Nicotine dependence and major depression (severity of comorbidity)	3,724 African American individuals	NA	4q32.2	FSTL5	rs553959375-G	0.908	5E-6		0.8425	[0.48-1.2] unit increase	Illumina [9520174] (imputed)	N
1826	chr4	162690146	162690147	rs114147769	32066700	Zhang R	2020-02-05	Transl Psychiatry	Genome-wide study of immune biomarkers in cerebrospinal fluid and serum from patients with bipolar disorder and controls.	Serum immune biomarker levels	184 Scandinavian ancestry bipolar disorder cases, 107 Scandinavian ancestry controls	NA	4q32.2	FSTL5	rs114147769-A	0.968	3E-8	(TIMP-2)	42.516	NR unit decrease	Affymetrix, Illumina [> 5000000] (imputed)	N
1826	chr4	162732212	162732213	rs1369125	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	4q32.2	NR	rs1369125-?	NR	3E-6		4.645	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1827	chr4	162811568	162811569	rs115460205	28990359	Polimanti R	2017-10-09	Am J Med Genet B Neuropsychiatr Genet	Ancestry-specific and sex-specific risk alleles identified in a genome-wide gene-by-alcohol dependence interaction study of risky sexual behaviors.	Risky sexual behaviors (alcohol dependence interaction)	454 African American women cases, 1,087 African American men cases, 444 European ancestry women cases, 992 European ancestry men cases, 231 African American women controls, 401 African American men controls, 142 European ancestry women controls, 173 European ancestry men controls		4q32.2	NR	rs115460205-?	0.9307	4E-8	(EA, men)			Illumina [at least 550000] (imputed)	N
1827	chr4	162824365	162824366	rs17536732	28990359	Polimanti R	2017-10-09	Am J Med Genet B Neuropsychiatr Genet	Ancestry-specific and sex-specific risk alleles identified in a genome-wide gene-by-alcohol dependence interaction study of risky sexual behaviors.	Risky sexual behaviors (alcohol dependence interaction)	454 African American women cases, 1,087 African American men cases, 444 European ancestry women cases, 992 European ancestry men cases, 231 African American women controls, 401 African American men controls, 142 European ancestry women controls, 173 European ancestry men controls		4q32.2	NR	rs17536732-?	0.9315	4E-8	(EA, men)			Illumina [at least 550000] (imputed)	N
1827	chr4	162901224	162901225	rs116557595	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (negative Marder score)	1,390 European ancestry cases	NA	4q32.2		rs116557595-G	NR	7E-6	(GLM)	3.8348	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
1827	chr4	162909217	162909217	rs5863506	31092297	Guan M	2019-05-15	Hum Genomics	Genome-wide association study identifies novel loci for type 2 diabetes-attributed end-stage kidney disease in African Americans.	Type 2 diabetes and end-stage kidney disease	3,432 African-American cases, 6,977 African-American controls	NA	4q32.2		rs5863506-TA	0.33	2E-6		1.22	[1.12-1.32]	Affymetrix, Illumina [NR] (imputed)	N
1828	chr4	162951026	162951027	rs551838480	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		FSTL5	rs551838480-?	NR	8E-9	(male)	1.09583	[NR] unit increase	Affymetrix [NR] (imputed)	N
1828	chr4	162996108	162996109	rs140229059	31816047	Boutin TS	2019-12-09	Hum Mol Genet	Insights into the genetic basis of retinal detachment.	Retinal detachment or retinal break	3,977 British ancestry cases, 360,233 British ancestry controls	NA	4q32.2	FSTL5	rs140229059-?	0.010999999999999899	1E-6		1.5741153	[1.24-2]	Affymetrix, Illumina [7701827] (imputed)	N
1828	chr4	162997577	162997578	rs902851	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Monokine induced by gamma interferon levels	3,685 Finnish ancestry individuals	NA	4q32.2	NR	rs902851-T	NR	5E-6		0.8205	[0.45-1.19] SD units decrease	NR [10700000] (imputed)	N
1828	chr4	163012054	163012065	rs111427307	29559693	Zengini E	2018-03-20	Nat Genet	Genome-wide analyses using UK Biobank data provide insights into the genetic architecture of osteoarthritis.	Osteoarthritis (self-reported)	12,658 European ancestry cases, 50,898 European ancestry controls		4q32.2	NR	rs111427307-GATTCCTTGTCA	0.9801701	2E-6		1.2839905	[1.43-1.28]	Affymetrix [16499239] (imputed)	N
1828	chr4	163018482	163018483	rs77978620	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	4q32.2	NR	rs77978620-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1828	chr4	163031930	163031931	rs79044762	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		FSTL5	rs79044762-?	NR	5E-9		1.99239	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1828	chr4	163031930	163031931	rs79044762	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		FSTL5	rs79044762-?	NR	3E-8	(male)	1.76824	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1828	chr4	163038863	163038864	rs11931941	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	4q32.2	NA	rs11931941-A	0.2212	5E-10		0.0125	[0.0086-0.0164] unit increase	NR [~ 27400000] (imputed)	N
1828	chr4	163046175	163046176	rs79011195	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	4q32.2		rs79011195-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1829	chr4	163135812	163135813	rs78493864	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	4q32.2	NR	rs78493864-?	NR	4E-6		2692.4275	NR unit decrease	Illumina [2379855]	N
1829	chr4	163152907	163152908	rs182734081	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (negative Marder score)	1,390 European ancestry cases	NA	4q32.2		rs182734081-C	NR	4E-6	(GLM)	5.7984	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
1829	chr4	163161118	163161119	rs12711357	30294719	Zeng Y	2018-08-24	JAMA Netw Open	Sex Differences in Genetic Associations With Longevity.	Longevity	564 Han Chinese ancestry male centenarian cases, 1,614 Han Chinese ancestry female centenarian cases, 773 Han Chinese ancestry male middle-aged controls, 1,526 Han Chinese ancestry female middle-aged controls	NA	4q32.2	FSTL5	rs12711357-?	0.8	9E-6	(female)	1.310616	[1.16-1.47]	Illumina [5595657] (imputed)	N
1829	chr4	163162796	163162797	rs202013048	31194736	Tiensuu H	2019-06-13	PLoS Genet	Risk of spontaneous preterm birth and fetal growth associates with fetal SLIT2.	Spontaneous preterm birth with premature rupture of membranes	133 Finnish ancestry infant cases, 419 Finnish ancestry infant controls	NA	4q32.2	FSTL5, LOC101928052	rs202013048-?	NR	4E-6		3.78		Illumina [6778521] (imputed)	N
1830	chr4	163202106	163202106	rs200217504	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	4q32.2	FSTL5	rs200217504-?	NR	6E-8			[NR]	Affymetrix [> 30000000] (imputed)	N
1830	chr4	163242928	163242929	rs12513273	34020725	Reddy JS	2021-05-21	Acta Neuropathol Commun	Genome-wide analysis identifies a novel LINC-PINT splice variant associated with vascular amyloid pathology in Alzheimer's disease.	Cerebral amyloid angiopathy x APOEe4 status interaction in Alzheimer's disease	534 European ancestry APOEe4 carriers, 287 European ancestry APOEe4 non-carriers	NA		FSTL5	rs12513273-A	0.04	9E-6				Illumina [1679420] (imputed)	N
1830	chr4	163243052	163243053	rs4440177	23942779	McGue M	2013-08-14	Behav Genet	A genome-wide association study of behavioral disinhibition.	Alcohol dependence	7,188 European ancestry individuals	NA	4q32.2	intergenic	rs4440177-A	0.338	6E-6		0.347	[NR] unit increase	Illumina [527829]	N
1831	chr4	163333404	163333405	rs35509282	25023989	Schmit SL	2014-07-14	Carcinogenesis	A novel colorectal cancer risk locus at 4q32.2 identified from an international genome-wide association study.	Colorectal cancer	485 Ashkenazi Jewish cases, 498 Ashkenazi Jewish controls, 1,977 European ancestry cases, 999 European ancestry controls	1,131 Ashkenazi Jewish cases, 831 Ashkenazi Jewish controls	4q32.2	FSTL5, NAF1	rs35509282-A	NR	8E-9		1.53	[1.39-1.67]	Illumina [up to 9177523] (imputed)	N
1831	chr4	163349583	163349584	rs2712672	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,931 Sub-Saharan African ancestry males	NA	4q32.2		rs2712672-A	0.89841	8E-6		0.0193667	[0.011-0.028] unit increase	Illumina [13900000] (imputed)	N
1831	chr4	163390932	163390933	rs4139	30369944	Balakrishnan P	2018-10-12	Front Genet	Genetic Variants Related to Cardiometabolic Traits Are Associated to B Cell Function, Insulin Resistance, and Diabetes Among AmeriCan Indians: The Strong Heart Family Study.	HOMA-B (corrected for HOMA-IR)	1,892 American Indian ancestry individuals	NA	4q32.2	FSTL5, LOC729971	rs4139-?	0.35	3E-7		16.99	unit increase	Illumina [120975] (imputed)	N
1832	chr4	163470926	163470927	rs34796809	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	4q32.2	intergenic	rs34796809-C	NR	8E-6	(EA)			Illumina [up to 11995908] (imputed)	N
1832	chr4	163475466	163475467	rs116505892	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q32.2	NR	rs116505892-C	0.02265	3E-10	(PREP)	0.0332	NR unit increase	Illumina [1671387] (imputed)	N
1832	chr4	163558993	163558994	rs195932	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	4q32.2		rs195932-A	0.3563	2E-9	(conditional-joint)	0.0088	[0.0059-0.0117] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1833	chr4	163627639	163627640	rs195542	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	4q32.2	Intergenic	rs195542-T	0.3428	1E-9	(MTAG)	0.0115	[0.0078-0.0152] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1833	chr4	163627639	163627640	rs195542	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	4q32.2	Intergenic	rs195542-G	0.6572	1E-8		0.0118	[0.0077-0.0159] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1833	chr4	163627639	163627640	rs195542	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	4q32.2	Intergenic	rs195542-T	0.3426	1E-9	(MTAG)	0.0106	[0.0073-0.0139] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1833	chr4	163703638	163703639	rs1458146	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	4q32.2	FSTL5, NAF1	rs1458146-A	0.2866	1E-9		0.0114226	[0.0078-0.0151] unit decrease	Affymetrix [11880941] (imputed)	N
1833	chr4	163704082	163704083	rs9997394	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	4q32.2	FSTL5, NAF1	rs9997394-G	0.7134	1E-9		1.0257254		Affymetrix [11880941] (imputed)	N
1834	chr4	163731497	163731498	rs6536686	30306274	Shah RL	2018-10-10	Hum Genet	Genome-wide association studies for corneal and refractive astigmatism in UK Biobank demonstrate a shared role for myopia susceptibility loci.	Corneal astigmatism	Up to 86,335 European ancestry individuals		4q32.2	MIR4454	rs6536686-C	0.192	9E-6		0.016	[0.0082-0.0238] dioptres decrease	NR [5901671] (imputed)	N
1834	chr4	163735583	163735584	rs1841023	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	4q32.2		rs1841023-A	0.6904	2E-9		0.0092	[0.0063-0.0121] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1834	chr4	163738120	163738121	rs6840361	19896111	Medland SE	2009-11-04	Am J Hum Genet	Common variants in the trichohyalin gene are associated with straight hair in Europeans.	Hair morphology	4,845 European ancestry individuals from 2,892 families, 16,140 European ancestry individuals	NA	4q32.2	NAF1	rs6840361-C	NR	4E-6				Illumina [~ 1000000] (imputed)	N
1834	chr4	163749606	163749607	rs11723207	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	4q32.2	Intergenic	rs11723207-T	0.3216	3E-10	(MTAG)	0.0088	[0.0061-0.0115] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1836	chr4	163978318	163978319	rs150100144	32386560	Ramirez J	2020-04-29	Am J Hum Genet	Common Genetic Variants Modulate the Electrocardiographic Tpeak-to-Tend Interval.	TPE interval (recovery after exercise)	51,503 European ancestry individuals	NA	4q32.2	NAF1	rs150100144-G	0.962	1E-8		0.101	[0.066-0.136] unit increase	Affymetrix [~ 9000000] (imputed)	N
1836	chr4	164048198	164048199	rs4691895	32109421	Li C	2020-02-20	Am J Hum Genet	Genome-Wide Association Analysis in Humans Links Nucleotide Metabolism to Leukocyte Telomere Length.	Leukocyte telomere length	78,592 European ancestry individuals	NA	4q32.2	NAF1	rs4691895-C	0.78	2E-21		0.058	[0.046-0.07] unit increase	Affymetrix, Illumina, Perlegen [up to 30071938] (imputed)	N
1836	chr4	164070121	164070122	rs2320614	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung adenocarcinoma	11,273 European ancestry cases,  55,483 European ancestry controls	NA	4q32.2	NAF1	rs2320614-C	0.400167412	2E-7		1.0883278	[1.053889519-1.123891441]	Illumina [10439017] (imputed)	N
1836	chr4	164072514	164072515	rs62335067	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q32.2	NR	rs62335067-C	0.01394	3E-8	(APRT)	0.2057	NR unit decrease	Illumina [1671387] (imputed)	N
1836	chr4	164101481	164101482	rs10857352	31171785	Dorajoo R	2019-06-06	Nat Commun	Loci for human leukocyte telomere length in the Singaporean Chinese population and trans-ethnic genetic studies.	Leukocyte telomere length	16,759 Singaporean Han Chinese ancestry individuals	6,337 Singaporean Chinese ancestry individuals, up to 37,505 European ancestry individuals	4q32.2	NAF1	rs10857352-A	NR	5E-9	(East Asian)	0.064	NR unit decrease	Illumina [6407959] (imputed)	N
1836	chr4	164101481	164101482	rs10857352	31171785	Dorajoo R	2019-06-06	Nat Commun	Loci for human leukocyte telomere length in the Singaporean Chinese population and trans-ethnic genetic studies.	Leukocyte telomere length	16,759 Singaporean Han Chinese ancestry individuals	6,337 Singaporean Chinese ancestry individuals, up to 37,505 European ancestry individuals	4q32.2	NAF1	rs10857352-A	NR	4E-12		0.045	NR unit decrease	Illumina [6407959] (imputed)	N
1836	chr4	164101523	164101524	rs1479090	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	4q32.2	NAF1, NPY1R	rs1479090-A	0.809319276	9E-6		1.0680943	[1.04-1.1]	Illumina [10439017] (imputed)	N
1837	chr4	164193672	164193673	rs72697068	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	4q32.2	NR	rs72697068-A	NR	8E-6		1.11	[NR]	Illumina [7158791] (imputed)	N
1837	chr4	164216738	164216739	rs4356873	33568662	Dashti HS	2021-02-10	Nat Commun	Genetic determinants of daytime napping and effects on cardiometabolic health.	Daytime nap	452,633 European ancestry individuals	541,333 European ancestry individuals	4q32.2	NPY1R, NAF1	rs4356873-C		1E-10		0.0064	[0.0044-0.0084] unit increase	Affymetrix [13304133] (imputed)	N
1837	chr4	164230787	164230788	rs4146926	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	4q32.2		rs4146926-C	0.7271	4E-8	(conditional-joint)	0.0087	[0.0056-0.0118] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1837	chr4	164230787	164230788	rs4146926	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	4q32.2	Intergenic	rs4146926-C	0.7271	1E-10	(MTAG)	0.0094	[0.0065-0.0123] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1837	chr4	164232615	164232616	rs5012553	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	4q32.2	Intergenic	rs5012553-A	0.7297	2E-10		0.0163	[0.011-0.021] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1838	chr4	164233328	164233329	rs11729053	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	4q32.2	Intergenic	rs11729053-A	0.7302	3E-16	(MTAG)	0.0152	[0.011-0.019] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1838	chr4	164238384	164238385	rs4478137	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Subjective well-being (MTAG)	388,538 European ancestry individuals	NA	4q32.2	NR	rs4478137-G	0.3702	3E-10		0.012	[0.0083-0.0157] unit decrease	Illumina [NR] (imputed)	N
1838	chr4	164238384	164238385	rs4478137	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Subjective well-being	388,538 European ancestry individuals	NA	4q32.2	NR	rs4478137-G	0.3702	3E-8		0.0131	[0.0086-0.0176] unit decrease	Illumina [NR] (imputed)	N
1838	chr4	164238384	164238385	rs4478137	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Subjective well-being	298,420 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	4q32.2	NR	rs4478137-A	0.627	5E-6		0.013951937	[0.008-0.0199] unit increase	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
1838	chr4	164245404	164245405	rs9764	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	4q32.2	Intergenic	rs9764-T	0.7313	2E-12		0.0155	[0.011-0.02] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1838	chr4	164245853	164245854	rs10033119	30108155	Hebbar P	2018-08-14	J Lipid Res	Genome-wide association study identifies novel recessive genetic variants for high TGs in an Arab population.	Triglyceride levels	1,353 Kuwaiti ancestry individuals	1,176 Kuwaiti ancestry individuals	4q32.2	NPY1R	rs10033119-G	NR	1E-10		6.446	z-score increase	Illumina [632375]	N
1838	chr4	164245853	164245854	rs10033119	27005419	Borne Y	2016-03-22	Hum Mol Genet	Genome wide association study identifies two loci associated with cadmium in erythrocytes among never-smokers.	Erythrocyte cadmium concentration	2,704 ever-smoker individuals, 1,728 never-smoker individuals	NA	4q32.2	NPY1R	rs10033119-G	0.05992	8E-6		0.1655	[NR] unit increase	Illumina [658884]	N
1838	chr4	164248801	164248802	rs28436846	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	4q32.2	Intergenic	rs28436846-T	0.7299	2E-14	(MTAG)	0.0154	[0.011-0.019] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1838	chr4	164254819	164254820	rs28431810	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	TRAIL levels	8,186 Finnish ancestry individuals	NA	4q32.2	NR	rs28431810-G		3E-6		0.1195	[0.07-0.169] SD units increase	NR [10700000] (imputed)	N
1838	chr4	164261830	164261831	rs142931664	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in dyslipidemia	295 Korean ancestry cases, 20,474 Korean ancestry controls	NA	4q32.2		rs142931664-T	0.01956	1E-6		2.596	[1.761-3.826]	Affymetrix [7975321] (imputed)	N
1838	chr4	164291196	164291197	rs4410486	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	4q32.2	NPY1R	rs4410486-?	NR	7E-6	(LPE 18:1)	1.5257452	[0.86-2.19] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1838	chr4	164346608	164346609	rs113423646	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	4q32.2	Intergenic	rs113423646-T	NR	1E-6	(men)	0.407099	[0.24-0.57] unit increase	Illumina [13520550] (imputed)	N
1838	chr4	164359677	164359678	rs148636479	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	4q32.2		rs148636479-T	NR	4E-8		0.0405	[0.026-0.055] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1838	chr4	164359677	164359678	rs148636479	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	4q32.2	NR	rs148636479-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
1838	chr4	164359677	164359678	rs148636479	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	4q32.2		rs148636479-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1838	chr4	164359677	164359678	rs148636479	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	4q32.2	NA	rs148636479-A	0.9723	5E-10		0.0386	[0.026-0.051] unit increase	NR [~ 27400000] (imputed)	N
1839	chr4	164438199	164438200	rs9308062	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Small cell lung carcinoma	2,664 European ancestry cases,  21,444 European ancestry controls	NA	4q32.2	TMA16	rs9308062-T	0.416531265	5E-7		1.1650723	[1.097465593-1.236843752]	Illumina [10439017] (imputed)	N
1839	chr4	164447656	164447657	rs115500520	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	4q32.2	Intergenic	rs115500520-T	NR	2E-6	(men)	0.417023	[0.25-0.59] unit increase	Illumina [13520550] (imputed)	N
1839	chr4	164455254	164455255	rs17472994	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Pars triangularis volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	4q32.2	MARCH1	rs17472994-?		7E-6				Illumina [4322238] (imputed)	N
1839	chr4	164493806	164493807	rs72989863	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	4q32.2	MARCH1	rs72989863-G	NR	6E-9		1.066	NR	Affymetrix, Illumina [8278136] (imputed)	N
1840	chr4	164532800	164532801	rs3792615	21490949	Sim X	2011-04-07	PLoS Genet	Transferability of type 2 diabetes implicated loci in multi-ethnic cohorts from Southeast Asia.	Type 2 diabetes	2,010 Chinese ancestry cases, 1,945 Chinese ancestry controls, 794 Malay ancestry cases, 1,240 Malay ancestry controls, 977 Asian Indian ancestry cases, 1,169 Asian Indian ancestry controls	NA	4q32.3	MARCH1	rs3792615-T	0.95	9E-6	(Indian)	1.93	[1.45-2.59]	Illumina [~ 2000000] (imputed)	N
1841	chr4	164636862	164636863	rs142665580	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	4q32.3	NR	rs142665580-?	NR	8E-6		0.4763	[0.26-0.7] unit increase	Illumina [at least 560000] (imputed)	N
1841	chr4	164710807	164710808	rs139869159	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		MARCHF1	rs139869159-?	NR	2E-8		0.24	[NR] unit increase	Affymetrix [NR] (imputed)	N
1841	chr4	164731631	164731632	rs41445146	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	4q32.3	NR	rs41445146-?	NR	5E-32				Affymetrix [NR]	N
1841	chr4	164744894	164744895	rs13103455	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in diabetes mellitus	153 Korean ancestry cases, 5,161 Korean ancestry controls	NA	4q32.3		rs13103455-C	0.02127	8E-6		3.159	[1.908-5.23]	Affymetrix [7975321] (imputed)	N
1842	chr4	164822987	164822988	rs79743645	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		MARCHF7	rs79743645-?	NR	2E-8	(female)	1.91526	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1842	chr4	164837072	164837073	rs62350593	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	4q32.3	NR	rs62350593-?	NR	4E-6		4.596	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1842	chr4	164850408	164850409	rs55899995	33232274	Mohammadnejad A	2020-11-24	Aging (Albany NY)	Generalized correlation coefficient for genome-wide association analysis of cognitive ability in twins.	Cognitive function (generalized correlation coefficient)	278 Chinese ancestry dizygotic twins	NA	4q32.3	NR	rs55899995-?	NR	1E-6			[NR]	Illumina [5432814] (imputed)	N
1842	chr4	164851162	164851163	rs150081844	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Chickenpox	107,769 European ancestry cases, 15,982 European ancestry controls	NA	4q32.3	NR	rs150081844-?	NR	2E-6		0.2328	[0.13-0.33] unit decrease	Illumina [at least 560000] (imputed)	N
1843	chr4	164941509	164941510	rs74488808	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Trunk fat mass	3,399 whole genome sequenced individuals, 12,838 European ancestry individuals	10,667 European ancestry individuals	4q32.3	01, 03, 2016	rs74488808-C	0.0107	2E-6		0.3234	[0.19-0.46] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1843	chr4	164950163	164950164	rs6536772	34476894	Schmitz J	2021-09-03	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study and polygenic risk score analysis for hearing measures in children.	Hearing function (left/right asymmetry)	5,344 European ancestry children	NA	4q32.3		rs6536772-G	0.69	5E-6		0.09	[0.051-0.129] unit increase	Illumina [5305352] (imputed)	N
1843	chr4	164959803	164959804	rs4533720	24578125	Olden M	2014-02-27	J Am Soc Nephrol	Common variants in UMOD associate with urinary uromodulin levels: a meta-analysis.	Urinary uromodulin levels	10,884 European ancestry individuals	NA	4q32.3	MARCH1	rs4533720-A	0.53	4E-7		0.07	[0.050-0.090] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1843	chr4	164990613	164990614	rs150541056	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body fat mass	3,399 whole genome sequenced individuals, 11,802 European ancestry individuals	10,670 European ancestry individuals	4q32.3	01, 03, 2016	rs150541056-T	0.9925	7E-7		0.3502	[0.21-0.49] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1843	chr4	165010555	165010556	rs35807987	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	4q32.3	NR	rs35807987-?	NR	9E-6		4.439	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1844	chr4	165022250	165022251	rs9762450	30160337	Asleh R	2018-08-30	Clin Transplant	Genome Wide Association Study Reveals Novel Genetic Loci Associated With Change in Renal Function in Heart Transplant Recipients.	Glomerular filtration rate change in heart transplantation	243 European ancestry individuals, 1 American Indian ancestry individual, 7 individuals	NA	4q32.3	MARCH1	rs9762450-C	0.24	1E-6		8.7	[5.29-12.11] unit increase	Illumina [314903] (imputed)	N
1844	chr4	165051991	165051991	rs200790231	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-2 receptor antagonist levels	3,677 Finnish ancestry individuals	NA	4q32.3	NR	rs200790231-GTA		9E-6		0.107	[0.06-0.154] SD units increase	NR [10700000] (imputed)	N
1844	chr4	165069355	165069356	rs6822628	29478026	Shahin MH	2018-02-24	J Am Heart Assoc	Genome-Wide Association Approach Identified Novel Genetic Predictors of Heart Rate Response to ?-Blockers.	Heart rate response to beta blockers (atenolol add-on therapy)	198 European American hypertensive individuals, 127 African American hypertensive individuals	NA	4q32.3	NR	rs6822628-G	0.93	4E-8	(EA)	5.29	[3.49-7.09] bpm decrease	Illumina [at least 1100000] (imputed)	N
1844	chr4	165069736	165069737	rs17044565	29478026	Shahin MH	2018-02-24	J Am Heart Assoc	Genome-Wide Association Approach Identified Novel Genetic Predictors of Heart Rate Response to ?-Blockers.	Heart rate response to beta blockers (atenolol add-on therapy)	198 European American hypertensive individuals, 127 African American hypertensive individuals	NA	4q32.3	NR	rs17044565-T	0.93	4E-8	(EA)	5.29	[3.49-7.09] bpm decrease	Illumina [at least 1100000] (imputed)	N
1844	chr4	165075507	165075508	rs723730	29478026	Shahin MH	2018-02-24	J Am Heart Assoc	Genome-Wide Association Approach Identified Novel Genetic Predictors of Heart Rate Response to ?-Blockers.	Heart rate response to beta blockers (atenolol add-on therapy)	198 European American hypertensive individuals, 127 African American hypertensive individuals	NA	4q32.3	NR	rs723730-A	0.93	4E-8	(EA)	5.29	[3.49-7.09] bpm decrease	Illumina [at least 1100000] (imputed)	N
1844	chr4	165076903	165076904	rs6835078	29478026	Shahin MH	2018-02-24	J Am Heart Assoc	Genome-Wide Association Approach Identified Novel Genetic Predictors of Heart Rate Response to ?-Blockers.	Heart rate response to beta blockers (atenolol add-on therapy)	198 European American hypertensive individuals, 127 African American hypertensive individuals	NA	4q32.3	NR	rs6835078-C	0.93	4E-8	(EA)	5.29	[3.49-7.09] bpm decrease	Illumina [at least 1100000] (imputed)	N
1844	chr4	165077426	165077427	rs6840738	29478026	Shahin MH	2018-02-24	J Am Heart Assoc	Genome-Wide Association Approach Identified Novel Genetic Predictors of Heart Rate Response to ?-Blockers.	Heart rate response to beta blockers (atenolol add-on therapy)	198 European American hypertensive individuals, 127 African American hypertensive individuals	NA	4q32.3	NR	rs6840738-A	0.93	4E-8	(EA)	5.29	[3.49-7.09] bpm decrease	Illumina [at least 1100000] (imputed)	N
1844	chr4	165078111	165078112	rs985676	29478026	Shahin MH	2018-02-24	J Am Heart Assoc	Genome-Wide Association Approach Identified Novel Genetic Predictors of Heart Rate Response to ?-Blockers.	Heart rate response to beta blockers (atenolol add-on therapy)	198 European American hypertensive individuals, 127 African American hypertensive individuals	NA	4q32.3	NR	rs985676-T	0.93	4E-8	(EA)	5.29	[3.49-7.09] bpm decrease	Illumina [at least 1100000] (imputed)	N
1844	chr4	165078592	165078593	rs17044630	29478026	Shahin MH	2018-02-24	J Am Heart Assoc	Genome-Wide Association Approach Identified Novel Genetic Predictors of Heart Rate Response to ?-Blockers.	Heart rate response to beta blockers (atenolol add-on therapy)	198 European American hypertensive individuals, 127 African American hypertensive individuals	NA	4q32.3	NR	rs17044630-T	0.93	5E-8	(EA)	5.28	[3.46-7.1] bpm decrease	Illumina [at least 1100000] (imputed)	N
1844	chr4	165080375	165080376	rs11930019	29478026	Shahin MH	2018-02-24	J Am Heart Assoc	Genome-Wide Association Approach Identified Novel Genetic Predictors of Heart Rate Response to ?-Blockers.	Heart rate response to beta blockers (atenolol add-on therapy)	198 European American hypertensive individuals, 127 African American hypertensive individuals	NA	4q32.3	NR	rs11930019-T	0.93	5E-8	(EA)	5.28	[3.46-7.1] bpm decrease	Illumina [at least 1100000] (imputed)	N
1844	chr4	165080529	165080530	rs11943491	29478026	Shahin MH	2018-02-24	J Am Heart Assoc	Genome-Wide Association Approach Identified Novel Genetic Predictors of Heart Rate Response to ?-Blockers.	Heart rate response to beta blockers (atenolol add-on therapy)	198 European American hypertensive individuals, 127 African American hypertensive individuals	NA	4q32.3	NR	rs11943491-G	0.93	5E-8	(EA)	5.27	[3.45-7.09] bpm decrease	Illumina [at least 1100000] (imputed)	N
1844	chr4	165080831	165080832	rs9991538	29478026	Shahin MH	2018-02-24	J Am Heart Assoc	Genome-Wide Association Approach Identified Novel Genetic Predictors of Heart Rate Response to ?-Blockers.	Heart rate response to beta blockers (atenolol add-on therapy)	198 European American hypertensive individuals, 127 African American hypertensive individuals	NA	4q32.3	NR	rs9991538-T	0.93	5E-8	(EA)	5.27	[3.45-7.09] bpm decrease	Illumina [at least 1100000] (imputed)	N
1844	chr4	165080904	165080905	rs10002082	29478026	Shahin MH	2018-02-24	J Am Heart Assoc	Genome-Wide Association Approach Identified Novel Genetic Predictors of Heart Rate Response to ?-Blockers.	Heart rate response to beta blockers (atenolol add-on therapy)	198 European American hypertensive individuals, 127 African American hypertensive individuals	NA	4q32.3	NR	rs10002082-A	0.93	5E-8	(EA)	5.27	[3.45-7.09] bpm decrease	Illumina [at least 1100000] (imputed)	N
1844	chr4	165081402	165081403	rs11931264	29478026	Shahin MH	2018-02-24	J Am Heart Assoc	Genome-Wide Association Approach Identified Novel Genetic Predictors of Heart Rate Response to ?-Blockers.	Heart rate response to beta blockers (atenolol add-on therapy)	198 European American hypertensive individuals, 127 African American hypertensive individuals	NA	4q32.3	NR	rs11931264-T	0.93	5E-8	(EA)	5.27	[3.45-7.09] bpm decrease	Illumina [at least 1100000] (imputed)	N
1844	chr4	165082895	165082896	rs1120384	29478026	Shahin MH	2018-02-24	J Am Heart Assoc	Genome-Wide Association Approach Identified Novel Genetic Predictors of Heart Rate Response to ?-Blockers.	Heart rate response to beta blockers (atenolol add-on therapy)	198 European American hypertensive individuals, 127 African American hypertensive individuals	NA	4q32.3	NR	rs1120384-G	0.93	6E-8	(EA)	5.26	[3.44-7.08] bpm decrease	Illumina [at least 1100000] (imputed)	N
1844	chr4	165085788	165085789	rs1431001	29478026	Shahin MH	2018-02-24	J Am Heart Assoc	Genome-Wide Association Approach Identified Novel Genetic Predictors of Heart Rate Response to ?-Blockers.	Heart rate response to beta blockers (atenolol add-on therapy)	198 European American hypertensive individuals, 127 African American hypertensive individuals	NA	4q32.3	NR	rs1431001-A	0.93	6E-8	(EA)	5.26	[3.44-7.08] bpm decrease	Illumina [at least 1100000] (imputed)	N
1844	chr4	165085901	165085902	rs1430999	29478026	Shahin MH	2018-02-24	J Am Heart Assoc	Genome-Wide Association Approach Identified Novel Genetic Predictors of Heart Rate Response to ?-Blockers.	Heart rate response to beta blockers (atenolol add-on therapy)	198 European American hypertensive individuals, 127 African American hypertensive individuals	NA	4q32.3	NR	rs1430999-G	0.93	6E-8	(EA)	5.26	[3.44-7.08] bpm decrease	Illumina [at least 1100000] (imputed)	N
1844	chr4	165086117	165086118	rs1430998	29478026	Shahin MH	2018-02-24	J Am Heart Assoc	Genome-Wide Association Approach Identified Novel Genetic Predictors of Heart Rate Response to ?-Blockers.	Heart rate response to beta blockers (atenolol add-on therapy)	198 European American hypertensive individuals, 127 African American hypertensive individuals	NA	4q32.3	NR	rs1430998-A	0.93	2E-7	(EA)	5.17	[3.31-7.03] bpm decrease	Illumina [at least 1100000] (imputed)	N
1844	chr4	165090880	165090881	rs13435288	29478026	Shahin MH	2018-02-24	J Am Heart Assoc	Genome-Wide Association Approach Identified Novel Genetic Predictors of Heart Rate Response to ?-Blockers.	Heart rate response to beta blockers (atenolol add-on therapy)	198 European American hypertensive individuals, 127 African American hypertensive individuals	NA	4q32.3	NR	rs13435288-A	0.93	4E-7	(EA)	5.03	[3.15-6.91] bpm decrease	Illumina [at least 1100000] (imputed)	N
1844	chr4	165093155	165093156	rs17044711	29478026	Shahin MH	2018-02-24	J Am Heart Assoc	Genome-Wide Association Approach Identified Novel Genetic Predictors of Heart Rate Response to ?-Blockers.	Heart rate response to beta blockers (atenolol add-on therapy)	198 European American hypertensive individuals, 127 African American hypertensive individuals	NA	4q32.3	NR	rs17044711-C	0.93	4E-7	(EA)	5.04	[3.16-6.92] bpm decrease	Illumina [at least 1100000] (imputed)	N
1844	chr4	165095589	165095590	rs10517800	29478026	Shahin MH	2018-02-24	J Am Heart Assoc	Genome-Wide Association Approach Identified Novel Genetic Predictors of Heart Rate Response to ?-Blockers.	Heart rate response to beta blockers (atenolol add-on therapy)	198 European American hypertensive individuals, 127 African American hypertensive individuals	NA	4q32.3	NR	rs10517800-C	0.93	4E-7	(EA)	5.04	[3.16-6.92] bpm decrease	Illumina [at least 1100000] (imputed)	N
1844	chr4	165098601	165098602	rs7673540	29478026	Shahin MH	2018-02-24	J Am Heart Assoc	Genome-Wide Association Approach Identified Novel Genetic Predictors of Heart Rate Response to ?-Blockers.	Heart rate response to beta blockers (atenolol add-on therapy)	198 European American hypertensive individuals, 127 African American hypertensive individuals	NA	4q32.3	NR	rs7673540-G	0.93	4E-7	(EA)	5.03	[3.15-6.91] bpm decrease	Illumina [at least 1100000] (imputed)	N
1844	chr4	165101990	165101991	rs7659131	29478026	Shahin MH	2018-02-24	J Am Heart Assoc	Genome-Wide Association Approach Identified Novel Genetic Predictors of Heart Rate Response to ?-Blockers.	Heart rate response to beta blockers (atenolol add-on therapy)	198 European American hypertensive individuals, 127 African American hypertensive individuals	NA	4q32.3	NR	rs7659131-G	0.93	4E-7	(EA)	5.03	[3.15-6.91] bpm decrease	Illumina [at least 1100000] (imputed)	N
1844	chr4	165111672	165111673	rs1835507	29478026	Shahin MH	2018-02-24	J Am Heart Assoc	Genome-Wide Association Approach Identified Novel Genetic Predictors of Heart Rate Response to ?-Blockers.	Heart rate response to beta blockers (atenolol add-on therapy)	198 European American hypertensive individuals, 127 African American hypertensive individuals	NA	4q32.3	NR	rs1835507-A	0.93	4E-7	(EA)	5.03	[3.15-6.91] bpm decrease	Illumina [at least 1100000] (imputed)	N
1844	chr4	165118454	165118455	rs61734696	30402224	Yamada Y	2018-09-17	Biomed Rep	Identification of 26 novel loci that confer susceptibility to early-onset coronary artery disease in a Japanese population.	Coronary artery disease	1,482 Japanese ancestry cases, 5,774 Japanese ancestry controls	NA	4q32.3	MARCH1	rs61734696-G	0.988	2E-29		33.333336		Illumina [up to 244000]	N
1844	chr4	165118454	165118455	rs61734696	30226566	Yamada Y	2018-09-04	Int J Mol Med	Identification of 13 novel susceptibility loci for early-onset myocardial infarction, hypertension, or chronic kidney disease.	Myocardial infarction	1,152 Japanese ancestry cases, 5,774 Japanese ancestry controls	NA	4q32.3	MARCH1	rs61734696-G		2E-25		100.0		Illumina [31245]	N
1844	chr4	165118454	165118455	rs61734696	30226566	Yamada Y	2018-09-04	Int J Mol Med	Identification of 13 novel susceptibility loci for early-onset myocardial infarction, hypertension, or chronic kidney disease.	Hypertension	3,444 Japanese ancestry cases, 4,636 Japanese ancestry controls	NA	4q32.3	MARCH1	rs61734696-G	0.988	1E-7		1.8518518		Illumina [31276]	N
1844	chr4	165118454	165118455	rs61734696	30226566	Yamada Y	2018-09-04	Int J Mol Med	Identification of 13 novel susceptibility loci for early-onset myocardial infarction, hypertension, or chronic kidney disease.	Chronic kidney disease	1,051 Japanese ancestry cases, 1,505 Japanese ancestry controls	NA	4q32.3	MARCH1	rs61734696-G	0.988	2E-8		4.5454545		Illumina [31514]	N
1844	chr4	165118454	165118455	rs61734696	29930801	Yamada Y	2018-05-29	Biomed Rep	Identification of nine genes as novel susceptibility loci for early-onset ischemic stroke, intracerebral hemorrhage, or subarachnoid hemorrhage.	Ischemic stroke	450 Japanese ancestry cases, 5,774 Japanese ancestry controls	NA	4q32.3	MARCH1	rs61734696-G	0.088	6E-9		14.285714		Illumina [31245]	N
1844	chr4	165124501	165124502	rs7671115	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Ovarian cancer (MTAG)	647 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	4q32.3	Intergenic	rs7671115-?		8E-6		1.0309278	[1.02-1.04]	Illumina [7645193] (imputed)	N
1844	chr4	165124501	165124502	rs7671115	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Ovarian cancer	647 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	4q32.3	Intergenic	rs7671115-?		6E-6		1.2987013	[1.16-1.45]	Illumina [7645193] (imputed)	N
1845	chr4	165192953	165192954	rs4055910	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	4q32.3	NR	rs4055910-?	NR	7E-6		4.486	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1846	chr4	165295398	165295399	rs183470003	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q32.3	MARCH1	rs183470003-T	0.999	4E-6	(AA)	0.231	unit increase	Illumina [NR] (imputed)	N
1846	chr4	165310784	165310785	rs4691972	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	4q32.3		rs4691972-?	NR	6E-8				NR [~ 8900000] (imputed)	N
1846	chr4	165323948	165323949	rs79669866	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Small cell lung carcinoma	2,664 European ancestry cases,  21,444 European ancestry controls	NA	4q32.3	MARCH1, MIR5684	rs79669866-A	0.010059146	9E-6		1.8112257	[1.39404894-2.353244681]	Illumina [10439017] (imputed)	N
1846	chr4	165370125	165370126	rs1857798	29278617	Sucheston-Campbell LE	2018-02-01	Pharmacogenet Genomics	Genome-wide meta-analyses identifies novel taxane-induced peripheral neuropathy-associated loci.	Taxane-induced peripheral neuropathy in breast cancer	204 European ancestry cases with >= grade 3 neuropathy, 1,919 European ancestry cases with < grade 3 neuropathy, 31 African American cases with >= grade 3 neuropathy, 108 African American cases with <grade 3 neuropathy	NA	4q32.3	MIR5684	rs1857798-C	0.38	8E-6		2.2727273	[1.52-3.45]	Illumina [at least 521600] (imputed)	N
1846	chr4	165400819	165400820	rs77156671	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	4q32.3	intergenic	rs77156671-A	0.002	2E-6		15.23	[3.38-68.72]	Illumina [1556551]	N
1847	chr4	165472674	165472675	rs149608518	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in diabetes mellitus	153 Korean ancestry cases, 5,161 Korean ancestry controls	NA	4q32.3		rs149608518-T	0.01035	1E-8		5.587	[3.086-10.12]	Affymetrix [7975321] (imputed)	N
1847	chr4	165473424	165473425	rs4691991	33407418	Jonsson A	2021-01-06	BMC Med Genomics	Genome-wide association study of circulating levels of glucagon during an oral glucose tolerance test.	Glucagon levels in response to oral glucose tolerance test (decremental area under the curve for 0-30 minutes)	553 European ancestry individuals, 1,346 individuals	NA	4q32.3	MARCH1	rs4691991-C	0.29	2E-8		0.21	[0.14-0.28] unit decrease	Illumina [NR] (imputed)	N
1847	chr4	165528431	165528432	rs6819334	33669428	Franco LAM	2021-02-16	Int J Mol Sci	Pharmacogenomic Profile and Adverse Drug Reactions in a Prospective Therapeutic Cohort of Chagas Disease Patients Treated with Benznidazole.	Adverse response to benznidazole in Chagas disease	61 Hispanic/Latino or unknown ancestry cases, 29 Hispanic/Latino or unknown ancestry controls	NA	4q32.3	NR	rs6819334-C	NR	3E-7				Affymetrix [at least 811691] (imputed)	N
1848	chr4	165650748	165650749	rs7654687	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	4q32.3	NR	rs7654687-?	NR	1E-6				Affymetrix [NR]	N
1849	chr4	165694434	165694435	rs4692008	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	4q32.3	C4orf39	rs4692008-?	NR	1E-6	(carnosine)	0.43106872	[0.26-0.6] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1849	chr4	165746010	165746011	rs17486696	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Positive affect	180,281 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	4q32.3	NR	rs17486696-T	0.9554	4E-6		0.0444	[0.026-0.063] unit decrease	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
1849	chr4	165766738	165766739	rs10011468	31260374	Pedergnana V	2019-07-01	J Interferon Cytokine Res	Impact of IFNL4 Genetic Variants on Sustained Virologic Response and Viremia in Hepatitis C Virus Genotype 3 Patients.	Response to direct-acting antiviral treatment in hepatitis C virus genotype 3	325 European, Asian and unknown ancestry responders, 84 European, Asian and unknown ancestry non-responders	NA	4q32.3	NR	rs10011468-?	NR	2E-6		2.43	NR	Affymetrix [~ 18000000] (imputed)	N
1849	chr4	165796145	165796146	rs7684645	32595297	Kweon K	2018-04-01	Soa Chongsonyon Chongsin Uihak	Genome-Wide Analysis Reveals Four Novel Loci for Attention-Deficit Hyperactivity Disorder in Korean Youths.	Attention deficit hyperactivity disorder (inattention symptoms)	27 Korean ancestry child sibling pairs	NA	4q32.3	APELA	rs7684645-A	0.387	1E-8				Affymetrix [432921]	N
1850	chr4	165864379	165864380	rs115056352	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	4q32.3	NR	rs115056352-?	NR	4E-8				Illumina [7760689] (imputed)	N
1850	chr4	165878334	165878335	rs3733418	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	4q32.3	C4orf39	rs3733418-G	0.197	9E-6	(MCP1 )	0.02	[NR] pg/mL increase	Illumina [899892]	N
1850	chr4	165908720	165908721	rs4691139	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	Ovarian cancer in BRCA1 mutation carriers	2,933 European ancestry carrier cases, 16,103 European ancestry carrier controls	NA	4q32.3	NR	rs4691139-G	0.467	4E-7		1.1581223	[1.09413051760919-1.22585676557555]	Illumina [11595112] (imputed)	N
1850	chr4	165908720	165908721	rs4691139	23544013	Couch FJ	2013-03-27	PLoS Genet	Genome-wide association study in BRCA1 mutation carriers identifies novel loci associated with breast and ovarian cancer risk.	Ovarian cancer in BRCA1 mutation carriers	683 European ancestry cases, 2,044 European ancestry controls	1,706 European ancestry cases, 10,258 European ancestry controls	4q32.3	intergenic	rs4691139-G	0.48	3E-8		1.2	[1.17-1.38]	Illumina [2568349] (imputed)	N
1850	chr4	165934573	165934574	rs12507813	30926877	Brcic L	2019-03-29	Sci Rep	Genome-wide association analysis suggests novel loci underlying thyroid antibodies in Hashimoto's thyroiditis.	Anti-thyroid peroxidase (TPOAb) levels in Hashimoto's thyroiditis	405 European ancestry cases	NA	4q32.3	TRIM61, TRIM60	rs12507813-G	0.857	5E-7		0.485	[0.3-0.67] unit decrease	Illumina [6007542] (imputed)	N
1851	chr4	165947489	165947490	rs2056252	30926877	Brcic L	2019-03-29	Sci Rep	Genome-wide association analysis suggests novel loci underlying thyroid antibodies in Hashimoto's thyroiditis.	Anti-thyroid peroxidase (TPOAb) and anti-thyroglobulin (TgAb) levels in Hashimoto's thyroiditis	405 European ancestry cases	NA	4q32.3	TRIM61, TRIM60	rs2056252-G	0.861	7E-7				Illumina [6007542] (imputed)	N
1851	chr4	166030857	166030858	rs17045969	33562295	Coltell O	2021-02-07	Nutrients	Circulating Adiponectin and Its Association with Metabolic Traits and Type 2 Diabetes: Gene-Diet Interactions Focusing on Selected Gene Variants and at the Genome-Wide Level in High-Cardiovascular Risk Mediterranean Subjects.	Adiponectin levels	348 European ancestry high cardiovascular risk elderly men	NA	4q32.3	TMEM192	rs17045969-T	0.118	5E-6		0.372	[NR] unit decrease	Illumina [625127]	N
1852	chr4	166078085	166078086	rs34995648	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	4q32.3	Intergenic	rs34995648-A	0.8745	3E-11	(MTAG)	0.0166	[0.012-0.021] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1852	chr4	166082561	166082562	rs34316562	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	4q32.3	Intergenic	rs34316562-T	0.1308	1E-13	(MTAG)	0.0146	[0.011-0.019] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1852	chr4	166085804	166085805	rs62353264	27067015	Smith DJ	2016-04-12	Mol Psychiatry	Genome-wide analysis of over 106 000 individuals identifies 9 neuroticism-associated loci.	Neuroticism	91,370 European ancestry individuals, 15,346 individuals	NA	4q32.3	TMEM192, KLHL2, MSMO1	rs62353264-A	0.986	4E-8		0.335	[0.22-0.45] unit decrease	Affymetrix [7207648] (imputed)	N
1852	chr4	166098546	166098547	rs4132378	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	4q32.3		rs4132378-T	0.8721	3E-12	(conditional-joint)	0.0147	[0.011-0.019] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1852	chr4	166126744	166126745	rs56405138	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	4q32.3		rs56405138-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1852	chr4	166126744	166126745	rs56405138	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	4q32.3		rs56405138-A	0.1231	1E-12		0.0153	[0.011-0.02] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1852	chr4	166132605	166132606	rs3857013	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on Townsend deprivation index (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	4q32.3		rs3857013-?	NR	5E-8				NR [NR]	N
1852	chr4	166147711	166147712	rs12500138	24684796	Cox AJ	2014-03-11	Neurobiol Aging	Heritability and genetic association analysis of cognition in the Diabetes Heart Study.	Cognitive function	423 type 2 diabetes cases and 127 unaffected siblings from 257 families	NA	4q32.3	KLHL2	rs12500138-T	0.051	6E-6	(Stroop)	0.2839	[0.16-0.41] unit increase	Affymetrix [> 371951] (imputed)	N
1852	chr4	166159325	166159326	rs3817246	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	4q32.3	Intergenic	rs3817246-A	0.4059	2E-9	(MTAG)	0.0141	[0.0096-0.0186] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1852	chr4	166195669	166195670	rs7699872	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	4q32.3	KLHL2	rs7699872-A	NR	3E-8		5.555	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1853	chr4	166255703	166255704	rs17046216	22791750	Chen G	2012-07-12	Hum Mol Genet	Genome-wide association study identifies novel loci association with fasting insulin and insulin resistance in African Americans.	Insulin-related traits	927 African American non-diabetic individuals	570 West African ancestry non-diabetic individuals	4q32.3	SC4MOL	rs17046216-A	0.48	3E-8	(IR)	0.19	[0.13-0.25] unit increase	Affymetrix [5396838] (imputed)	N
1853	chr4	166255703	166255704	rs17046216	22791750	Chen G	2012-07-12	Hum Mol Genet	Genome-wide association study identifies novel loci association with fasting insulin and insulin resistance in African Americans.	Insulin-related traits	927 African American non-diabetic individuals	570 West African ancestry non-diabetic individuals	4q32.3	SC4MOL	rs17046216-A	0.48	2E-8	(FI)	0.18	[0.12-0.24] unit increase	Affymetrix [5396838] (imputed)	N
1853	chr4	166259718	166259719	rs17046259	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	4q32.3	NR	rs17046259-?	NR	4E-9				Affymetrix [NR]	N
1853	chr4	166261799	166261800	rs1550270	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein BTC	5,358 Icelandic ancestry individuals	NA	4q32.3		rs1550270-C	0.2954	2E-46		0.280185	[0.24-0.32] unit increase	Illumina [7506463] (imputed)	N
1853	chr4	166261799	166261800	rs1550270	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	4q32.3	MSMO1	rs1550270-T	0.702502	4E-15		0.015898	[0.012-0.02] unit decrease	NR [13737936] (imputed)	N
1853	chr4	166261799	166261800	rs1550270	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	4q32.3		rs1550270-?	NR	1E-15				NR [~ 8900000] (imputed)	N
1853	chr4	166263459	166263460	rs1059214	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	4q32.3	NR	rs1059214-?	NR	2E-11				Affymetrix [NR]	N
1853	chr4	166266499	166266500	rs7690328	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	7,894 Sub-Saharan African ancestry individuals	NA	4q32.3		rs7690328-T	0.759808	6E-6		0.00983979	[0.0056-0.0141] unit decrease	Illumina [13900000] (imputed)	N
1853	chr4	166270841	166270842	rs11100606	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	4q32.3		rs11100606-?	NR	7E-12		0.0160602	[0.012-0.02] unit decrease	Affymetrix [20259828] (imputed)	N
1853	chr4	166277088	166277089	rs12498302	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	4q32.3	NR	rs12498302-C	0.191	2E-6	(IFNAR2_of_CD56dimCD16p)			Illumina [5084123] (imputed)	N
1853	chr4	166317197	166317198	rs10222703	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	4q32.3		rs10222703-T	NR	4E-10		0.008	[0.0055-0.0105] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1853	chr4	166319469	166319470	rs28503877	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	4q32.3		rs28503877-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1854	chr4	166336715	166336716	rs67650739	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	4q32.3		rs67650739-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1854	chr4	166338327	166338328	rs28573326	26545240	Giri A	2015-11-06	PLoS One	Genetic Determinants of Pelvic Organ Prolapse among African American and Hispanic Women in the Women's Health Initiative.	Pelvic organ prolapse (moderate/severe)	154 African American cases, 948 African American controls, 163 Hispanic cases, 305 Hispanic controls	NA	4q32.3	CPE	rs28573326-G	0.29	2E-6		1.67		Affymetrix [at least 730985] (imputed)	N
1854	chr4	166338327	166338328	rs28573326	26545240	Giri A	2015-11-06	PLoS One	Genetic Determinants of Pelvic Organ Prolapse among African American and Hispanic Women in the Women's Health Initiative.	Pelvic organ prolapse (moderate/severe)	154 African American cases, 948 African American controls, 163 Hispanic cases, 305 Hispanic controls	NA	4q32.3	CPE	rs28573326-G	0.29	1E-7	(AA)	2.14	[1.62-2.83]	Affymetrix [at least 730985] (imputed)	N
1854	chr4	166348345	166348346	rs1438119	32439431	Simard M	2020-05-19	J Allergy Clin Immunol	Polygenic risk score for atopic dermatitis in the Canadian population.	Atopic dermatitis (moderate to severe)	222 South East Asian ancestry, East Asian ancestry, South Asian ancestry, African American or Afro-Caribbean, European ancestry, Greater Middle Eastern (Middle Eastern, North African or Persian) cases, 2,466 Greater Middle Eastern (Middle Eastern, North African or Persian), Hispanic or Latin American, NR moderate to severe atopic dermatitis cases, 2,466 South East Asian ancestry, East Asian ancestry, South Asian ancestry, African American or Afro-Caribbean, European ancestry, Greater Middle Eastern (Middle Eastern, North African or Persian) cases, 2,466 Greater Middle Eastern (Middle Eastern, North African or Persian), Hispanic or Latin American, NR controls without moderate to severe atopic dermatitis	NA	4q32.3		rs1438119-C	NR	2E-16	(additive)	0.874	[0.666-1.081] unit increase	Illumina [5894709] (imputed)	N
1854	chr4	166366729	166366730	rs138457734	32690583	Cheng B	2020-07-20	G3 (Bethesda)	Genome-Wide Association Analysis Identified ANXA1 Associated with Shoulder Impingement Syndrome in UK Biobank Samples.	Shoulder impingement syndrome	7,252 European ancestry individuals	NA	4q32.3		rs138457734-C	NR	5E-6		2.21871	[1.88-2.56] unit increase	Affymetrix [825927] (imputed)	N
1855	chr4	166472008	166472009	rs150946534	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (underestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	4q32.3	NR	rs150946534-?	NR	4E-7		0.7	[0.45-0.95] unit decrease	Illumina [at least 830937] (imputed)	N
1855	chr4	166472138	166472139	rs17046724	30621171	Coltell O	2019-01-04	Nutrients	Genome-Wide Association Study (GWAS) on Bilirubin Concentrations in Subjects with Metabolic Syndrome: Sex-Specific GWAS Analysis and Gene-Diet Interactions in a Mediterranean Population.	Serum bilirubin levels x sex interaction in metabolic syndrome	188 European ancestry male individuals, 242 European ancestry female individuals	NA	4q32.3	intergenic	rs17046724-?	NR	2E-6				Illumina [622468]	N
1855	chr4	166574266	166574267	rs2611215	25751624	Onengut-Gumuscu S	2015-04-01	Nat Genet	Fine mapping of type 1 diabetes susceptibility loci and evidence for colocalization of causal variants with lymphoid gene enhancers.	Type 1 diabetes	6,683 European ancestry cases, 12,173 European ancestry controls, 2,601 European ancestry affected sibling pair families, 69 European ancestry trios	NA	4q32.3	Intergenic	rs2611215-A	0.15	2E-11		1.18		Illumina [135870]	N
1855	chr4	166579646	166579647	rs2611206	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (multi-trait analysis)	90,939 European ancestry individuals	NA	4q32.3	CPE, TLL1	rs2611206-G	0.85	3E-9		0.0072	NR unit decrease	Affymetrix, Illumina [8002429] (imputed)	N
1855	chr4	166579646	166579647	rs2611206	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (adjusted for vertical disc diameter)	67,040 British ancestry individuals	NA	4q32.3	CPE, TLL1	rs2611206-G	0.85	3E-7		0.0063	NR unit decrease	Affymetrix [at least 8002429] (imputed)	N
1855	chr4	166579646	166579647	rs2611206	30251476	Lopez-Mejias R	2018-09-24	Arthritis Rheumatol	A genome-wide association study identifies a 3'UTR genetic variant of RARB associated with carotid intima-media thickness in rheumatoid arthritis.	Carotid plaques in rheumatoid arthritis	1,355 Spanish ancestry individuals	NA	4q32.3	RP11-340B18.1	rs2611206-G	0.874	5E-6		1.8867927	[1.45-2.44]	Illumina [63089444] (imputed)	N
1855	chr4	166589928	166589929	rs17504041	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	4q32.3	NR	rs17504041-?	NR	6E-9				Affymetrix [NR]	N
1856	chr4	166594187	166594188	rs17588573	29534301	Nishida N	2018-03-13	Hepatology	Key HLA-DRB1-DQB1 haplotypes and role of the BTNL2 gene for response to a hepatitis B vaccine.	Response to hepatitis B vaccine	107 Japanese ancestry low responder individuals, 351 Japanese ancestry intermediate responder individuals, 735 Japanese ancestry high responder individuals	NA	4q32.3	TLL1	rs17588573-?		6E-6		0.208	unit increase	Affymetrix [427664]	N
1856	chr4	166659697	166659698	rs716399	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Ruminococcus belonging to family Lachnospiraceae)	1,068 Japanese ancestry individuals	NA	4q32.3	RP11-340B18.1	rs716399-C	0.27	7E-6		0.162	[0.091-0.233] unit decrease	Illumina [6380737] (imputed)	N
1856	chr4	166672835	166672836	rs2859815	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q32.3	Intergenic	rs2859815-C	0.826	5E-6	(AA)	0.021	unit increase	Illumina [NR] (imputed)	N
1856	chr4	166699464	166699465	rs4639032	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	4q32.3	NR	rs4639032-?	NR	1E-7				Affymetrix [NR]	N
1857	chr4	166743921	166743922	rs199613270	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	4q32.3	TLL1	rs199613270-G	NR	4E-8		0.0260425	[0.017-0.035] unit decrease	Affymetrix [323858] (imputed)	N
1857	chr4	166751093	166751094	rs72635116	26545630	Deming Y	2015-09-25	Neurobiol Aging	A potential endophenotype for Alzheimer's disease: cerebrospinal fluid clusterin.	Cerebrospinal fluid clusterin levels	300 Alzheimer's disease cases, 373 controls	NA	4q32.3	TLL1	rs72635116-?		5E-6		0.313	[NR] unit decrease	Illumina [5970354] (imputed)	N
1857	chr4	166763388	166763389	rs6837610	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	4q32.3	TLL1	rs6837610-C	0.821	5E-8		0.09	[0.057-0.123] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1857	chr4	166777050	166777051	rs2045629	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	4q32.3	TLL1	rs2045629-?		8E-11				Affymetrix, Illumina [NR] (imputed)	N
1857	chr4	166783344	166783345	rs6820153	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	4q32.3		rs6820153-A	0.39	2E-9		6.04	z score increase	Affymetrix [9061022] (imputed)	N
1857	chr4	166783344	166783345	rs6820153	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	4q32.3	NR	rs6820153-A	0.4059	4E-11				NR [9056863] (imputed)	N
1857	chr4	166830363	166830364	rs12513380	23412934	Gourraud PA	2013-02-13	Brain	A genome-wide association study of brain lesion distribution in multiple sclerosis.	Multiple sclerosis	284 European ancestry individuals		4q32.3	TLL1	rs12513380-?		5E-6	(Cluxel size)			Illumina [208975]	N
1857	chr4	166837479	166837480	rs34740712	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	4q32.3	TLL1	rs34740712-C	0.104	5E-6		0.088	[0.051-0.125] unit decrease	Affymetrix, Illumina [7374092] (imputed)	N
1857	chr4	166848498	166848499	rs558257212	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	4q32.3	TLL1	rs558257212-A	0.9986	3E-6		0.5851	[0.34-0.83] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1857	chr4	166848498	166848499	rs558257212	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	4q32.3	TLL1	rs558257212-A	0.9986	7E-6		0.562	[0.32-0.81] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1857	chr4	166850464	166850465	rs7674118	26420894	Wuttke M	2015-09-28	Nephrol Dial Transplant	Genetic loci associated with renal function measures and chronic kidney disease in children: the Pediatric Investigation for Genetic Factors Linked with Renal Progression Consortium.	Glomerular filtration rate in chronic kidney disease	up to 744 Central European ancestry child cases, up to 397 Turkish ancestry child cases	NA	4q32.3	TLL1	rs7674118-T	0.1	1E-6	(EA)	0.15	[0.091-0.209] unit decrease	Illumina [~ 8300000] (imputed)	N
1857	chr4	166854138	166854139	rs11942650	30621171	Coltell O	2019-01-04	Nutrients	Genome-Wide Association Study (GWAS) on Bilirubin Concentrations in Subjects with Metabolic Syndrome: Sex-Specific GWAS Analysis and Gene-Diet Interactions in a Mediterranean Population.	Serum bilirubin levels in metabolic syndrome	188 European ancestry male individuals, 242 European ancestry female individuals	NA	4q32.3	TLL1	rs11942650-G	0.077	3E-6	(men)	0.263	[0.16-0.37] mg/dL increase	Illumina [622468]	N
1858	chr4	166872535	166872536	rs6812849	23726511	Xie P	2013-05-28	Biol Psychiatry	Genome-wide association study identifies new susceptibility loci for posttraumatic stress disorder.	Post-traumatic stress disorder (asjusted for relatedness)	up to 308 European ancestry cases, up to 1,538 European ancestry controls, up to 456 African American cases, up to 2,936 African American controls	NA	4q32.3	TLL1	rs6812849-?	NR	5E-7	(Trauma exposed controls; EA)			Illumina [up to 871502]	N
1858	chr4	166872535	166872536	rs6812849	23726511	Xie P	2013-05-28	Biol Psychiatry	Genome-wide association study identifies new susceptibility loci for posttraumatic stress disorder.	Post-traumatic stress disorder (asjusted for relatedness)	up to 308 European ancestry cases, up to 1,538 European ancestry controls, up to 456 African American cases, up to 2,936 African American controls	NA	4q32.3	TLL1	rs6812849-?	NR	1E-7	(Whole cohort; EA)			Illumina [up to 871502]	N
1858	chr4	166872535	166872536	rs6812849	23726511	Xie P	2013-05-28	Biol Psychiatry	Genome-wide association study identifies new susceptibility loci for posttraumatic stress disorder.	Post-traumatic stress disorder	300 European ancestry cases, up to 1,538 European ancestry controls, 444 African American cases, up to 2,936 African American controls	207 European ancestry cases, up to 1,692 European ancestry controls, 89 African American cases, up to 655 African American controls	4q32.3	TLL1	rs6812849-?	NR	3E-9	(Whole cohort; EA)			Illumina [up to 871502]	N
1858	chr4	166872535	166872536	rs6812849	23726511	Xie P	2013-05-28	Biol Psychiatry	Genome-wide association study identifies new susceptibility loci for posttraumatic stress disorder.	Post-traumatic stress disorder	300 European ancestry cases, up to 1,538 European ancestry controls, 444 African American cases, up to 2,936 African American controls	207 European ancestry cases, up to 1,692 European ancestry controls, 89 African American cases, up to 655 African American controls	4q32.3	TLL1	rs6812849-?	NR	1E-6	(Trauma Exposed controls; EA)			Illumina [up to 871502]	N
1858	chr4	166929987	166929988	rs17047200	28163062	Matsuura K	2017-02-02	Gastroenterology	Genome-Wide Association Study Identifies TLL1 Variant Associated With Development of Hepatocellular Carcinoma After Eradication of Hepatitis C Virus Infection.	Hepatocellular carcinoma in post hepatitis C eradication by interferon therapy	123 Japanese ancestry hepatocellular carcinoma cases, 333 Japanese ancestry 5-yr hepatocellular carcinoma-free controls	130 Japanese ancestry hepatocellular carcinoma cases, 210 Japanese ancestry 5-yr hepatocellular carcinoma-free controls	4q32.3	TLL1	rs17047200-T		3E-8		2.37	[1.74-3.23]	Affymetrix [443299]	N
1858	chr4	166942389	166942390	rs111757584	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	4q32.3	TLL1	rs111757584-A	0.0461	2E-6		0.1121	[0.066-0.158] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1858	chr4	166956667	166956668	rs78894508	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-to-hip ratio adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,049 whole genome sequenced individuals, 29,518 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,001 Mylopotamos (founder/genetic isolate) individuals, 867 Pomak (founder/genetic isolate) individuals	206,045 European ancestry individuals	4q32.3	TLL1	rs78894508-A	0.959	5E-6		0.0953	[0.054-0.136] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1859	chr4	166997145	166997146	rs17047225	29266176	Inaba H	2017-12-19	Cancer	Bone mineral density in children with acute lymphoblastic leukemia.	Bone mineral density change response to combined chemotherapy in acute lymphoblastic leukemia	235 European ancestry cases, 48 African American ancestry cases, 13 cases	NA	4q32.3	TLL1	rs17047225-C	0.050	8E-6		0.815	z score decrease	Affymetrix [448281]	N
1860	chr4	167164746	167164747	rs148696004	28644415	Guenard F	2017-06-23	Nutrients	Genome-Wide Association Study of Dietary Pattern Scores.	Western dietary pattern	141 individuals	NA	4q32.3	TLL1	rs148696004-?	NR	8E-6				Illumina [2668805]	N
1860	chr4	167187045	167187046	rs13113999	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	Serous borderline ovarian cancer	1,954 European ancestry cases, 40,941 European ancestry controls	NA	4q32.3	NR	rs13113999-T	0.515695999999999	5E-8		1.2250321	[1.13870977824743-1.31789814351814]	Illumina [11595112] (imputed)	N
1861	chr4	167292798	167292799	rs141232006	29855589	Chernus J	2018-05-31	Sci Rep	GWAS reveals loci associated with velopharyngeal dysfunction.	Velopharyngeal dysfunction	54 Hispanic or Latin American and unknown ancestry cases, 922 Hispanic or Latin American and unknown ancestry controls	NA	4q32.3	NR	rs141232006-?	NR	4E-6		0.09919747	[NR] unit decrease	Illumina [at least 269494] (imputed)	N
1861	chr4	167343938	167343939	rs17635075	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	4q32.3	TLL1	rs17635075-G	0.076	8E-6	(Gestational age )	0.05	[NR] wk increase	Illumina [899892]	N
1862	chr4	167381501	167381502	rs6841675	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	4q32.3	NR	rs6841675-?	NR	2E-11				Affymetrix [NR]	N
1862	chr4	167409870	167409871	rs9996713	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	4q32.3		rs9996713-A	NR	2E-8		0.0465	[0.03-0.063] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1862	chr4	167455492	167455493	rs11941399	22864933	O'Donnell PH	2012-01-03	Cancer	Identification of novel germline polymorphisms governing capecitabine sensitivity.	Capecitabine sensitivity	Up to 84 East Asian ancestry lymphoblastoid cell lines, up to 164 European ancestry lymphoblastoid cell lines, up to 173 African ancestry lymphoblastoid cell lines, up to 82 African American lymphoblastoid cell lines	NA	4q32.3	intergenic	rs11941399-?	NR	1E-6				NR [~ 2000000]	N
1863	chr4	167620536	167620537	rs191826433	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	4q32.3	SPOCK3	rs191826433-A	0.9979	4E-6		0.6518	[0.37-0.93] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1863	chr4	167634739	167634740	rs565992396	34620984	Skuladottir AT	2021-10-07	Commun Biol	A genome-wide meta-analysis uncovers six sequence variants conferring risk of vertigo.	Vertigo	48,072 European ancestry cases, 894,541 European ancestry controls	NA	4q32.3		rs565992396-C	NR	4E-6		1.46375		Affymetrix, Illumina [62056310] (imputed)	N
1864	chr4	167691099	167691100	rs2124456	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SPOCK3	5,365 Icelandic ancestry individuals	NA	4q32.3		rs2124456-T	0.1685	8E-17		0.208222	[0.16-0.26] unit increase	Illumina [7506463] (imputed)	N
1864	chr4	167731887	167731888	rs143200770	25839716	Ng E	2015-04-02	Environ Res	Genome-wide association study of plasma levels of polychlorinated biphenyls disclose an association with the CYP2B6 gene in a population-based sample.	Polychlorinated biphenyl levels	922 European ancestry individuals	NA	4q32.3	NR	rs143200770-?		8E-7	(PCB99)	0.96	[0.59-1.33] unit decrease	Illumina [8736858] (imputed)	N
1864	chr4	167731887	167731888	rs143200770	25839716	Ng E	2015-04-02	Environ Res	Genome-wide association study of plasma levels of polychlorinated biphenyls disclose an association with the CYP2B6 gene in a population-based sample.	Polychlorinated biphenyl levels	922 European ancestry individuals	NA	4q32.3	NR	rs143200770-?		3E-7	(PCB138)	0.95	[0.6-1.3] unit decrease	Illumina [8736858] (imputed)	N
1866	chr4	167961737	167961738	rs17599599	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	4q32.3	SPOCK3	rs17599599-A	0.028	2E-28	(Testican-3, SPOCK3.9906.21.3)	0.85	[0.69-1.01] unit increase	Affymetrix [10572788] (imputed)	N
1866	chr4	167976805	167976806	rs138803617	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	4q32.3	SPOCK3	rs138803617-A	0.0147205308496094	4E-6	(G_unclassified_O_Bacteroidales_HB)	1.08913	[0.63-1.55] unit increase	Illumina [7711310] (imputed)	N
1867	chr4	168065927	168065928	rs35261719	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	4q32.3	NR	rs35261719-G	0.565	8E-19	(Testican-3, SPOCK3.9906.21.3)	0.22	[0.16-0.28] unit increase	Affymetrix [10572788] (imputed)	N
1867	chr4	168080927	168080928	rs10024236	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Medial orbital frontal cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	4q32.3	SPOCK3	rs10024236-?		4E-6				Illumina [4322238] (imputed)	N
1867	chr4	168092210	168092211	rs71620422	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SPOCK3	5,365 Icelandic ancestry individuals	NA	4q32.3		rs71620422-T	0.04005	1E-14		0.3697	[0.28-0.46] unit decrease	Illumina [7506463] (imputed)	N
1867	chr4	168131447	168131448	rs10022799	28808816	Xu C	2017-08-14	Biogerontology	A genome-wide association study of cognitive function in Chinese adult twins.	Cognitive function	139 Chinese ancestry dizygotic twin pairs	NA	4q32.3	SPOCK3	rs10022799-?		4E-6				Illumina [1048575]	N
1867	chr4	168139379	168139380	rs9312517	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	4q32.3	SPOCK3	rs9312517-G	0.228	8E-7	(TC )	0.03	[NR] mg/dL increase	Illumina [899892]	N
1867	chr4	168139379	168139380	rs9312517	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	4q32.3	SPOCK3	rs9312517-G	0.228	3E-6	(LDL )	0.03	[NR] mg/dL increase	Illumina [899892]	N
1867	chr4	168139858	168139859	rs62353586	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SPOCK3	5,365 Icelandic ancestry individuals	NA	4q32.3		rs62353586-A	0.03147	1E-186		1.44812	[1.35-1.55] unit increase	Illumina [7506463] (imputed)	N
1867	chr4	168139858	168139859	rs62353586	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q32.3	SPOCK3	rs62353586-G	0.96921875	5E-96	(SPOCK3, 9906_21_3)	1.4434122	[1.31-1.57] unit decrease	Illumina [> 1000000] (imputed)	N
1867	chr4	168163814	168163815	rs55768899	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	4q32.3	intergenic	rs55768899-A	NR	8E-6	(EA)			Illumina [up to 11995908] (imputed)	N
1868	chr4	168179342	168179343	rs116135844	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	4q32.3	SPOCK3	rs116135844-A	0.0430228335915815	2E-8	(G_unclassified_O_Bacteroidales_HB)	0.74623	[0.48-1.01] unit increase	Illumina [7711310] (imputed)	N
1868	chr4	168239405	168239406	rs9994322	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SPOCK3	5,365 Icelandic ancestry individuals	NA	4q32.3		rs9994322-C	0.0724	9E-74		0.645546	[0.58-0.72] unit decrease	Illumina [7506463] (imputed)	N
1868	chr4	168264248	168264249	rs13111850	33562295	Coltell O	2021-02-07	Nutrients	Circulating Adiponectin and Its Association with Metabolic Traits and Type 2 Diabetes: Gene-Diet Interactions Focusing on Selected Gene Variants and at the Genome-Wide Level in High-Cardiovascular Risk Mediterranean Subjects.	Adiponectin levels x Mediterranean diet adherence interaction	954 European ancestry high cardiovascular risk elderly individuals	NA	4q32.3	intergenic	rs13111850-C	0.033	6E-6			[NR]	Illumina [625127]	N
1868	chr4	168264248	168264249	rs13111850	22610502	Kennedy RB	2012-05-19	Hum Genet	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IL-10)	Up to 512 European ancestry individuals, up to 199 African American individuals	NA	4q32.3	SPOCK3	rs13111850-G		3E-11	(AA)			Illumina [NR]	N
1868	chr4	168284587	168284588	rs4362851	30898391	Lawrenson K	2019-03-19	Gynecol Oncol	Genome-wide association studies identify susceptibility loci for epithelial ovarian cancer in east Asian women.	Epithelial ovarian cancer	3,238 East Asian ancestry cases, 4,083 East Asian ancestry controls	NA	4q32.3		rs4362851-?	NR	2E-6	(ser_lg_lmp)	1.81		Illumina [11595112] (imputed)	N
1869	chr4	168324566	168324567	rs6815538	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	4q32.3	NR	rs6815538-T	0.956	1E-23	(Testican-3, SPOCK3.9906.21.3)	0.6	[0.48-0.72] unit increase	Affymetrix [10572788] (imputed)	N
1869	chr4	168325833	168325834	rs7675231	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (CGI-S score)	1,390 European ancestry cases	NA	4q32.3		rs7675231-?	NR	5E-6	(MLM)	0.6654135	[0.38-0.95] unit decrease	Illumina [~ 9000000] (imputed)	N
1869	chr4	168372432	168372433	rs191069440	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	4q32.3	NR	rs191069440-?	NR	6E-7	(AA)	0.9699	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1869	chr4	168394543	168394544	rs7671943	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	4q32.3	intergenic	rs7671943-G	NR	9E-6	(EA)			Illumina [up to 11995908] (imputed)	N
1869	chr4	168394543	168394544	rs7671943	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	4q32.3	intergenic	rs7671943-G	NR	9E-6				Illumina [up to 11995908] (imputed)	N
1870	chr4	168472369	168472370	rs1878686	34025683	Kanoni S	2021-05-07	Front Immunol	Nutrigenetic Interactions Might Modulate the Antioxidant and Anti-Inflammatory Status in Mastiha-Supplemented Patients With NAFLD.	Total antioxidant status in non-alcoholic fatty liver disease x mastiha supplementation interaction	35 European or unknown ancestry mastiha exposed individuals, 52 European or unknown ancestry unexposed individuals	NA	4q32.3	SPOCK3	rs1878686-A	0.56	1E-8		1.53	[1-2.06] unit decrease	Illumina [10307610] (imputed)	N
1870	chr4	168522750	168522751	rs6813517	25648963	Debette S	2014-11-25	Biol Psychiatry	Genome-wide studies of verbal declarative memory in nondemented older people: the Cohorts for Heart and Aging Research in Genomic Epidemiology consortium.	Verbal declarative memory	Up to 27,337 European ancestry individuals, up to 472 Korkulan individuals, up to 1,267 Erasmus Rucphen Family individuals	Up to 10,617 European ancestry individuals, up to 3,811 African American individuals	4q32.3	SPOCK3, ANXA10	rs6813517-T	0.21	3E-8	(CERAD-dr)	0.3686	[0.24-0.5] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1870	chr4	168547413	168547414	rs72705325	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Alcohol consumption x experiences in childhood (felt loved by family member) interaction	41,648 European ancestry individuals	NA	4q32.3		rs72705325-?	NR	1E-8		1.3698	[0.9-1.84] unit decrease	Affymetrix [NR] (imputed)	N
1871	chr4	168577796	168577797	rs12509485	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	4q32.3	NR	rs12509485-?	NR	2E-24				Affymetrix [NR]	N
1871	chr4	168660100	168660101	rs11131794	31513605	Jeon S	2019-09-12	PLoS One	Structural equation modeling for hypertension and type 2 diabetes based on multiple SNPs and multiple phenotypes.	Type 2 diabetes	8,842 Korean ancestry individuals	NA	4q32.3	intergenic	rs11131794-?		5E-6				NR [327872]	N
1872	chr4	168789571	168789572	rs17053607	28272467	Heilmann-Heimbach S	2017-03-08	Nat Commun	Meta-analysis identifies novel risk loci and yields systematic insights into the biology of male-pattern baldness.	Male-pattern baldness	10,846 European ancestry cases, 11,672 European ancestry controls	NA	4q32.3		rs17053607-G	0.05	1E-8		0.26	[0.16-0.36] unit increase	Affymetrix, Illumina [8004650] (imputed)	N
1873	chr4	168835334	168835335	rs77471149	28468790	Agopian AJ	2017-06-01	Circ Cardiovasc Genet	Genome-Wide Association Studies and Meta-Analyses for Congenital Heart Defects.	Left ventricular obstructive tract defect (maternal effect)	up to 439 European ancestry trios	NA	4q32.3	intergenic	rs77471149-?	NR	9E-7		2.001385	[1.52-2.64]	Illumina [at least 4756722] (imputed)	N
1873	chr4	168838595	168838596	rs10019912	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Pursuit maintenance gain	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	4q32.3	ANXA10	rs10019912-T	0.2613	4E-6	(African)			Illumina [4404269] (imputed)	N
1873	chr4	168926493	168926494	rs190721506	29520036	Stein MB	2018-03-08	Mol Psychiatry	Genome-wide analysis of insomnia disorder.	Insomnia	2,297 European American cases, 334 African American cases, 606 Latino American cases, 9,176 European American controls, 2,345 African American controls, 2,893 Latino American controls	NA	4q32.3	RP11-310I9.1	rs190721506-C	NR	7E-7	(AA)	5.5555553		Illumina [at least 360704] (imputed)	N
1874	chr4	168965732	168965733	rs11934907	25854761	Zuo X	2015-04-09	Nat Commun	Whole-exome SNP array identifies 15 new susceptibility loci for psoriasis.	Psoriasis	11,245 Han Chinese ancestry cases, 11,177 Han Chinese ancestry controls	6,369 Han Chinese ancestry cases, 13,969 Han Chinese ancestry controls	4q32.3	intergenic	rs11934907-A	NR	2E-6	(fixed)	1.0789814		Illumina [87827]	N
1874	chr4	168977084	168977085	rs9999798	29678681	Matana A	2018-04-18	Genomics	Genome-wide meta-analysis identifies novel gender specific loci associated with thyroid antibodies level in Croatians.	Plasma anti-thyroglobulin and anti-thyroid peroxidase levels (bivariate analysis)	up to 1,596 Croatian ancestry women, up to 1,033 Croatian ancestry men	NA	4q32.3	ANXA10	rs9999798-?	NR	4E-6		0.011	[0.0064-0.0156] unit increase	Illumina [5527232] (imputed)	N
1874	chr4	168984073	168984074	rs13133687	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	4q32.3	Intergenic	rs13133687-A	NR	7E-7	(between families)	4.966	unit increase	Affymetrix [up to 15107142] (imputed)	N
1874	chr4	168992440	168992441	rs12331700	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	4q32.3	NR	rs12331700-?	NR	7E-10				Affymetrix [NR]	N
1874	chr4	169077371	169077371	rs375286460	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	4q32.3	NR	rs375286460-ATAT	0.5620700000000001	2E-10		0.0193687	[0.013-0.025] unit increase	Affymetrix [16577424] (imputed)	N
1875	chr4	169084367	169084368	rs13113929	30275891	Das S	2018-09-17	BMC Proc	Family-based genome-wide association of inflammation biomarkers and fenofibrate treatment response in the GOLDN study.	HDL cholesterol and triglyceride levels	821 individuals	NA	4q32.3	Intergenic	rs13113929-?		6E-6				NR [NR]	N
1875	chr4	169188403	169188404	rs55903627	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q32.3	NR	rs55903627-C	0.01394	2E-8	(USP5)	0.147	NR unit increase	Illumina [1671387] (imputed)	N
1876	chr4	169270835	169270836	rs538044222	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	4q32.3	DDX60L	rs538044222-T	0.999	2E-6		1.7401	[1.03-2.45] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1876	chr4	169300450	169300451	rs11734310	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	4q32.3		rs11734310-C	NR	4E-8		0.0171	[0.011-0.023] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
1876	chr4	169301244	169301245	rs62334097	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	4q32.3	NR	rs62334097-G	0.112515	3E-10		0.018812	[0.013-0.025] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1876	chr4	169335285	169335286	rs62334125	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Pursuit maintenance gain	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	4q32.3	DDX60L	rs62334125-C	0.1359	2E-6				Illumina [4404269] (imputed)	N
1876	chr4	169338519	169338520	rs1963569	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	4q32.3	DDX60L	rs1963569-A	0.478	8E-6	(Diet fat )	0.03	[NR] %energy increase	Illumina [899892]	N
1876	chr4	169345004	169345005	rs62334147	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	4q32.3	NR	rs62334147-C	NR	2E-9		0.0186	[0.013-0.025] unit increase	Affymetrix [9000000] (imputed)	N
1877	chr4	169363065	169363066	rs545581839	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	4q32.3	NR	rs545581839-?	NR	4E-6		1.44862	[0.83-2.06] unit increase	NR [13958389] (imputed)	N
1877	chr4	169409957	169409958	rs2710833	20708005	Chalasani N	2010-08-10	Gastroenterology	Genome-wide association study identifies variants associated with histologic features of nonalcoholic Fatty liver disease.	Non-alcoholic fatty liver disease histology (AST)	236 European ancestry cases	NA	4q32.3	DDX60L, PALLD	rs2710833-A	0.17	6E-7		0.41	[NR] unit increase	Illumina [324623]	N
1877	chr4	169447519	169447520	rs10019193	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	4q32.3	NR	rs10019193-?	NR	5E-7				Affymetrix [NR]	N
1878	chr4	169477046	169477047	rs11132324	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	4q32.3	FLJ31033	rs11132324-?	NR	1E-6	(propionic acid)	0.20938097	[0.12-0.29] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1878	chr4	169503179	169503180	rs4342159	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 2)	3,566 European ancestry individuals	4,680 European ancestry individuals	4q32.3		rs4342159-A	0.121999435	4E-10				Illumina [7417619] (imputed)	N
1878	chr4	169530257	169530258	rs17054392	18521091	Volpi S	2008-06-03	Mol Psychiatry	Whole genome association study identifies polymorphisms associated with QT prolongation during iloperidone treatment of schizophrenia.	Response to iloperidone treatment (QT prolongation)	91 African American Schizophrenia cases, 69 European ancestry Schizophrenia cases, 16 Asian ancestry Schizophrenia cases, 7 Schizophrenia cases	NA	4q32.3	PALLD	rs17054392-C	NR	3E-6				Affymetrix [339272]	N
1878	chr4	169552639	169552640	rs72699806	33594131	Donati G	2021-02-16	Sci Rep	Evidence for specificity of polygenic contributions to attainment in English, maths and science during adolescence.	Academic attainment (maths)	6,017 European ancestry adolescents	NA	4q32.3	NR	rs72699806-C	NR	7E-6		0.098	[0.055-0.141] unit decrease	Illumina [6319684] (imputed)	N
1878	chr4	169571144	169571145	rs145287839	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,931 Sub-Saharan African ancestry males	NA	4q32.3		rs145287839-T	0.981614	9E-7		0.0520907	[0.031-0.073] unit decrease	Illumina [13900000] (imputed)	N
1878	chr4	169596552	169596553	rs9998058	33445220	Li Y	2021-01-14	Am J Transplant	Donor genetic variants as risk factors for thrombosis after liver transplantation: A genome-wide association study.	Thrombosis in response to liver transplant	42 European ancestry pediatric cases, 268 European ancestry pediatric controls	64 European ancestry adult cases, 711 European ancestry adult controls	4q32.3	NR	rs9998058-C	0.0736	6E-6		2.7108	NR	Illumina [5393447] (imputed)	N
1879	chr4	169608789	169608790	rs17054480	26915486	Adams JN	2016-02-23	Gene	Genetic analysis of advanced glycation end products in the DHS MIND study.	Advanced glycation end-product levels	399 diabetes cases, 107 non-diabetes controls from 240 families	NA	4q32.3	PALLD	rs17054480-?	NR	8E-7		0.312	[0.19-0.43] unit decrease	Affymetrix [371951]	N
1879	chr4	169655479	169655480	rs2062591	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	4q32.3	PALLD	rs2062591-G	0.465753	2E-8	(-34 ms)	0.0313553	[0.02-0.042] unit increase	Affymetrix [10000000] (imputed)	N
1879	chr4	169668376	169668377	rs1500801	27236921	Rautanen A	2016-06-02	Am J Hum Genet	Polymorphism in a lincRNA Associates with a Doubled Risk of Pneumococcal Bacteremia in Kenyan Children.	Bacteremia	1,536 African ancestry cases, 2,677 African ancestry controls	434 African ancestry cases, 1,336 African ancestry controls	4q32.3	PALLD	rs1500801-?	NR	4E-6		1.64	[NR]	Affymetrix [up to 10996499] (imputed)	N
1879	chr4	169687724	169687725	rs7696431	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	4q32.3		rs7696431-G	NR	9E-24		0.0183	[0.015-0.022] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
1879	chr4	169687724	169687725	rs7696431	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	4q32.3	PALLD	rs7696431-T	0.5098	3E-8		0.0311	[0.02-0.042] unit increase	Affymetrix [at least 7947838] (imputed)	N
1879	chr4	169687724	169687725	rs7696431	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	4q32.3	PALLD	rs7696431-T	0.5093	3E-8		0.0351	[0.023-0.047] unit increase	NR [8041861] (imputed)	N
1879	chr4	169687724	169687725	rs7696431	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	4q32.3	PALLD	rs7696431-T	0.509	3E-8		0.035	[0.023-0.047] unit increase	Affymetrix [7947838] (imputed)	N
1879	chr4	169687999	169688000	rs869396	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	4q32.3	PALLD	rs869396-?	NR	8E-11		0.0317803	[0.022-0.041] unit decrease	Illumina [4804024] (imputed)	N
1879	chr4	169687999	169688000	rs869396	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	4q32.3	PALLD	rs869396-C		6E-18		0.222	unit increase	Affymetrix [at least 2696785] (imputed)	N
1879	chr4	169688068	169688069	rs869398	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	4q32.3	PALLD	rs869398-A	0.3911	9E-10		0.2082	[0.14-0.27] mmHg increase	Affymetrix [NR] (imputed)	N
1879	chr4	169691263	169691264	rs62334289	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	4q32.3	PALLD	rs62334289-A	0.3944	9E-18		0.2171	[0.17-0.27] mmHg increase	Affymetrix [NR] (imputed)	N
1879	chr4	169706996	169706997	rs113026070	25839716	Ng E	2015-04-02	Environ Res	Genome-wide association study of plasma levels of polychlorinated biphenyls disclose an association with the CYP2B6 gene in a population-based sample.	Polychlorinated biphenyl levels	922 European ancestry individuals	NA	4q32.3	NR	rs113026070-?	NR	8E-7	(PCB170)	0.26	[0.16-0.36] unit decrease	Illumina [8736858] (imputed)	N
1879	chr4	169717147	169717148	rs1566497	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Pulse pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	4q32.3	PALLD	rs1566497-A	0.42	2E-13		0.236	[0.18-0.29] unit increase	Affymetrix [~ 9800000] (imputed)	N
1879	chr4	169720381	169720382	rs116609577	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interferon gamma levels	7,701 Finnish ancestry individuals	NA	4q32.3	NR	rs116609577-C		5E-7		0.2726	[0.17-0.38] SD units decrease	NR [10700000] (imputed)	N
1879	chr4	169726026	169726027	rs13129779	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	4q32.3		rs13129779-T	NR	1E-8		0.0116	[0.0077-0.0155] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1879	chr4	169726026	169726027	rs13129779	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	4q32.3		rs13129779-?	NR	6E-12				NR [~ 8900000] (imputed)	N
1879	chr4	169728235	169728236	rs6854137	25881214	Shah AA	2015-02-27	Heart Surg Forum	Genetic variants associated with vein graft stenosis after coronary artery bypass grafting.	Vein graft stenosis in coronary artery bypass grafting	361 European ancestry cases, 160 European ancestry controls	NA	4q32.3	PALLD	rs6854137-A	0.44	4E-6				Illumina [905781]	N
1880	chr4	169815035	169815036	rs78036822	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q32.3	NR	rs78036822-A	0.01394	2E-8	(POLR2H)	0.00115	NR unit increase	Illumina [1671387] (imputed)	N
1881	chr4	169887438	169887439	rs1480520869	34620984	Skuladottir AT	2021-10-07	Commun Biol	A genome-wide meta-analysis uncovers six sequence variants conferring risk of vertigo.	Vertigo	48,072 European ancestry cases, 894,541 European ancestry controls	NA	4q32.3		rs1480520869-T	NR	6E-6		7.33751		Affymetrix, Illumina [62056310] (imputed)	N
1881	chr4	169948033	169948034	rs10518032	28322283	Chibnik LB	2017-03-21	Mol Psychiatry	Susceptibility to neurofibrillary tangles: role of the PTPRD locus and limited pleiotropy with other neuropathologies.	Cerebral amyloid angiopathy	404 European ancestry mild cases, 209 European ancestry moderate cases, 113 European ancestry severe cases, 183 European ancestry controls	369 individuals	4q32.3		rs10518032-G	0.93	3E-6	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1882	chr4	170013909	170013910	rs17626617	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Photic sneeze reflex	32,446 European ancestry cases, 67,249 European ancestry controls	NA	4q32.3	CBR4, SH3RF1	rs17626617-?	NR	9E-15		1.112	[1.083-1.143]	Illumina [13729857] (imputed)	N
1882	chr4	170028964	170028965	rs202156267	32349335	Lundback V	2020-04-27	Cells	Genome-Wide Association Study of Diabetogenic Adipose Morphology in the GENetics of Adipocyte Lipolysis (GENiAL) Cohort.	Adipose morphology	894 individuals	NA	4q32.3	NR	rs202156267-A	0.0313	9E-7		164.0	[-229--99] unit decrease	NR [9714326] (imputed)	N
1882	chr4	170074024	170074025	rs551544003	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	4q32.3	SH3RF1	rs551544003-A	0.002	2E-7		1.7981	[1.12-2.47] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1882	chr4	170074024	170074025	rs551544003	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	4q32.3	SH3RF1	rs551544003-A	0.002	7E-6		1.5532	[0.87-2.23] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1882	chr4	170094561	170094562	rs9994441	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	4q32.3	SH3RF1	rs9994441-C	NR	6E-7	(between families)	4.99	unit increase	Affymetrix [up to 15107142] (imputed)	N
1882	chr4	170124207	170124208	rs557373392	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body fat mass	3,399 whole genome sequenced individuals, 11,802 European ancestry individuals	10,670 European ancestry individuals	4q33	SH3RF1, RP11-327O17.2	rs557373392-T	0.0011	2E-6		1.7094	[1.01-2.41] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1883	chr4	170202861	170202862	rs7653924	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	67,764 individuals	NA	4q33	NR	rs7653924-?		5E-8				NR [8377093]	N
1883	chr4	170202861	170202862	rs7653924	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	65,967 individuals	NA	4q33	NR	rs7653924-?		5E-8				NR [8377093]	N
1883	chr4	170202861	170202862	rs7653924	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	4q33	SH3RF1	rs7653924-T	NR	6E-8	(EA)	1.0615711	[1.04-1.08]	Illumina [6627481] (imputed)	N
1883	chr4	170203366	170203367	rs7683893	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	4q33	SH3RF1	rs7683893-?	NR	4E-9		0.01163537	[0.0078-0.0155] unit increase	NR [7306098]	N
1883	chr4	170214189	170214190	rs141785723	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	4q33		rs141785723-C	NR	8E-6		4.3259	[2.47-6.18] unit increase	Illumina [NR] (imputed)	N
1883	chr4	170228548	170228549	rs4692709	33568662	Dashti HS	2021-02-10	Nat Commun	Genetic determinants of daytime napping and effects on cardiometabolic health.	Daytime nap	452,633 European ancestry individuals	541,333 European ancestry individuals	4q33	SH3RF1, NEK1	rs4692709-C		4E-7		0.0043	[0.0025-0.0061] unit increase	Affymetrix [13304133] (imputed)	N
1883	chr4	170259064	170259065	rs7672847	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Subjective well-being	298,420 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	4q33	NR	rs7672847-A	0.8288	4E-6		0.01816265	[0.01-0.026] unit decrease	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
1884	chr4	170263442	170263443	rs4535301	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	4q33	NEK1, SH3RF1, RPL6P12	rs4535301-T	NR	8E-6	(sleep duration)	0.2074	[0.12-0.3] unit increase	Affymetrix [7141204] (imputed)	N
1884	chr4	170303983	170303984	rs57346805	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	4q33	NR	rs57346805-?	NR	6E-11		1.059816	[1.04-1.08]	Affymetrix, Illumina [12447948] (imputed)	N
1884	chr4	170376704	170376705	rs12647126	31268507	Periyasamy S	2019-07-03	JAMA Psychiatry	Association of Schizophrenia Risk With Disordered Niacin Metabolism in an Indian Genome-wide Association Study.	Schizophrenia	816 Indian ancestry cases, 900 Indian ancestry controls, 505 Indian ancestry cases and 871 Indian ancestry controls from 405 families, up to 36,989 European and unknown ancestry cases, up to 113,075 European and unknown ancestry controls	NA	4q33	NR	rs12647126-?	NR	3E-8				Illumina [up to 5582932] (imputed)	N
1886	chr4	170583156	170583157	rs62333164	34873335	van Rheenen W	2021-12-06	Nat Genet	Common and rare variant association analyses in amyotrophic lateral sclerosis identify 15 risk loci with distinct genetic architectures and neuron-specific biology.	Amyotrophic lateral sclerosis	27,205 European ancestry cases, 110,881 European ancestry controls, 2,407 East Asian ancestry cases, 11,775 East Asian ancestry controls	NA			rs62333164-A	NR	7E-9		0.07	[0.046-0.094] unit increase	Illumina [10461755] (imputed)	N
1886	chr4	170583156	170583157	rs62333164	34873335	van Rheenen W	2021-12-06	Nat Genet	Common and rare variant association analyses in amyotrophic lateral sclerosis identify 15 risk loci with distinct genetic architectures and neuron-specific biology.	Amyotrophic lateral sclerosis	27,205 European ancestry cases, 110,881 European ancestry controls	NA	4q33		rs62333164-A	0.335	7E-8		0.063	[0.039-0.087] unit increase	Illumina [10461755] (imputed)	N
1886	chr4	170583156	170583157	rs62333164	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	4q33	CLCN3	rs62333164-A	0.3264	2E-10		0.0638	[0.044-0.083] unit decrease	NR [7784415] (imputed)	N
1886	chr4	170626551	170626552	rs10520163	29483656	Pardinas AF	2018-02-26	Nat Genet	Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.	Schizophrenia	40,675 European ancestry cases, 64,643 European ancestry controls	1,651 European ancestry cases, 4,111 cases, 142,717 European ancestry controls, 11,507 controls	4q33	C4orf27, CLCN3, NEK1	rs10520163-?	NR	3E-8		1.0548522	[1.04-1.07]	Illumina [8000000] (imputed)	N
1886	chr4	170626551	170626552	rs10520163	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	4q33	C4orf27, CLCN3, NEK1	rs10520163-T		9E-9		1.06	[1.04-1.08]	Affymetrix, Illumina [NR]	N
1886	chr4	170626551	170626552	rs10520163	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	4q33	NR	rs10520163-T	NR	1E-8		1.06	[NR]	Illumina [7158791] (imputed)	N
1886	chr4	170626551	170626552	rs10520163	25056061	Ripke S	2014-07-22	Nature	Biological insights from 108 schizophrenia-associated genetic loci.	Schizophrenia	32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	1,513 European ancestry cases, 66,236 European ancestry controls	4q33	C4orf27, CLCN3, NEK1	rs10520163-T	0.47	1E-9		1.065	[1.043-1.086]	Affymetrix, Illumina [9005918] (imputed)	N
1886	chr4	170642245	170642246	rs7438	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	4q33	CLCN3	rs7438-G	NR	1E-7	(EA)	1.0594343	[1.04-1.08]	Illumina [6627481] (imputed)	N
1886	chr4	170642245	170642246	rs7438	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	4q33	CLCN3	rs7438-A	NR	1E-8		1.058	[1.04-1.08]	Illumina [6627481] (imputed)	N
1886	chr4	170642245	170642246	rs7438	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	4q33	CLCN3, NEK1	rs7438-A	NR	7E-11		1.066	[1.05-1.09]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1887	chr4	170719214	170719215	rs6835612	30275891	Das S	2018-09-17	BMC Proc	Family-based genome-wide association of inflammation biomarkers and fenofibrate treatment response in the GOLDN study.	HDL cholesterol and triglyceride levels	821 individuals	NA	4q33	Intergenic	rs6835612-?		3E-6				NR [NR]	N
1887	chr4	170781318	170781319	rs6847701	33816493	Cai R	2021-03-18	Front Cell Dev Biol	Genome-Wide Association Identifies Risk Pathways for SAPHO Syndrome.	SAPHO syndrome	49 Chinese ancestry cases, 121 Chinese ancestry controls	NA	4q33	NR	rs6847701-?	NR	5E-7		0.2703	NR	Illumina [802276]	N
1888	chr4	170843784	170843785	rs4076681	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 1 levels	252 European ancestry individuals	NA	4q33		rs4076681-G	NR	3E-6		13.679	[8.1-19.26] unit decrease	Illumina [NR] (imputed)	N
1888	chr4	170873843	170873844	rs2955259	25201988	Rietveld CA	2014-09-08	Proc Natl Acad Sci U S A	Common genetic variants associated with cognitive performance identified using the proxy-phenotype method.	Educational attainment	106,736 European ancestry individuals	NA	4q33	intergenic	rs2955259-A	0.569	7E-8		0.024	[NR] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1888	chr4	170880882	170880883	rs11723530	23049088	Meng W	2012-10-09	Invest Ophthalmol Vis Sci	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		4q33	intergenic	rs11723530-?	0.489	4E-6			[NR]	Affymetrix, Illumina [152234]	N
1888	chr4	170910321	170910322	rs4320103	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	4q33	NR	rs4320103-G	0.03895	3E-13		0.00452	[0.0034-0.0057] unit increase	Affymetrix [NR] (imputed)	N
1889	chr4	170918217	170918220	rs149326061	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	4q33		rs149326061-G	NR	5E-10		0.0356	[0.024-0.047] unit increase	Affymetrix, Illumina [20528270] (imputed)	N
1889	chr4	170918217	170918220	rs149326061	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	4q33	NR	rs149326061-G	NR	1E-11		0.0433	[0.031-0.056] unit increase	Affymetrix [9000000] (imputed)	N
1889	chr4	170931124	170931125	rs17055385	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	4q33	AADAT	rs17055385-?	NR	8E-6	(isocitrate)	0.35726643	[0.2-0.51] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1889	chr4	170933158	170933159	rs6823836	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	4q33	Intergenic	rs6823836-T	0.506	2E-9	(MTAG)	0.0099	[0.0068-0.013] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1889	chr4	170935244	170935245	rs4692589	25390645	Otowa T	2014-11-12	PLoS One	Genome-wide and gene-based association studies of anxiety disorders in European and African American samples.	Anxiety disorder	324 African American cases, 273 African American controls, 757 European ancestry cases, 940 European ancestry controls	NA	4q33	MFAP3L	rs4692589-C		9E-7	(EA, factor score analysis)	0.067	[NR] unit decrease	Affymetrix [up to 730090]	N
1889	chr4	170944697	170944698	rs12646523	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	4q33		rs12646523-T	0.2483	4E-16		0.0132	[0.01-0.016] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1889	chr4	170956771	170956772	rs1904823	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	4q33	NR	rs1904823-C	0.252485	2E-9		0.048689857	[0.033-0.065] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1889	chr4	170956771	170956772	rs1904823	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	4q33	Intergenic	rs1904823-T	0.248	3E-15	(MTAG)	0.012	[0.0091-0.0149] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1889	chr4	170969798	170969799	rs7694879	25743335	Taylor PN	2015-03-06	Nat Commun	Whole-genome sequence-based analysis of thyroid function.	Free thyroxine concentration	2,287 European ancestry whole-genome sequenced individuals, 11,364 European ancestry individuals	NA	4q33	AADAT	rs7694879-T	0.095	4E-10		0.137	[0.094-0.18] unit increase	Illumina [at least 9558836] (imputed)	N
1889	chr4	170984228	170984229	rs113731629	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	4q33		rs113731629-T	0.9859	2E-8		0.0339	[0.022-0.046] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1889	chr4	171010100	171010101	rs11732763	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	4q33	NR	rs11732763-A	0.10569700000000004	2E-10		0.0113246	[0.0077-0.015] unit increase	Affymetrix [16582621] (imputed)	N
1889	chr4	171010100	171010101	rs11732763	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	4q33	NR	rs11732763-A	0.10569700000000004	3E-11		0.0124859	[0.0086-0.0164] unit increase	Affymetrix [16582614] (imputed)	N
1889	chr4	171014654	171014655	rs79751662	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Ease of getting up in the morning	385,949 European ancestry individuals	NA	4q33	NR	rs79751662-C	0.1067	2E-8		0.0156	[0.01-0.021] unit decrease	Affymetrix, Illumina [10862568] (imputed)	N
1889	chr4	171019390	171019391	rs11729169	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	4q33	NR	rs11729169-T	0.10714199999999996	3E-15		0.010678	[0.008-0.0133] unit increase	Affymetrix [16582909] (imputed)	N
1889	chr4	171019390	171019391	rs11729169	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	4q33	NR	rs11729169-T	0.10714199999999996	7E-15		0.0117013	[0.0087-0.0147] unit increase	Affymetrix [16582965] (imputed)	N
1889	chr4	171042157	171042158	rs537508	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		4q33	AADAT	rs537508-G	0.580943	3E-8		0.00777315	[0.005-0.0105] unit decrease	Affymetrix [12370749]	N
1890	chr4	171053518	171053519	rs11726248	23408906	Porcu E	2013-02-07	PLoS Genet	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 14,459 European ancestry females, up to 10,936 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males	NA	4q33	AADAT	rs11726248-A	0.106	5E-9	(FT4)	0.111	[0.074-0.148] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1890	chr4	171053518	171053519	rs11726248	23408906	Porcu E	2013-02-07	PLoS Genet	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 14,459 European ancestry females, up to 10,936 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males	NA	4q33	AADAT	rs11726248-A	0.106	4E-7	(FT4-Females)	0.123	[0.076-0.17] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1890	chr4	171070909	171070910	rs7698119	31358974	Evangelou E	2019-07-29	Nat Hum Behav	New alcohol-related genes suggest shared genetic mechanisms with neuropsychiatric disorders.	Alcohol consumption	480,842 European ancestry individuals	NA	4q33	AADAT	rs7698119-A	0.49	1E-9		0.006	[0.004-0.008] unit decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1890	chr4	171086392	171086393	rs12651313	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	4q33	NR	rs12651313-G	0.443	2E-8		0.00747515	[0.0049-0.0101] unit decrease	NR [~ 9732723] (imputed)	N
1890	chr4	171086392	171086393	rs12651313	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week)	up to 941,280 European ancestry individuals	NA	4q33	NR	rs12651313-G	0.443	4E-9		0.008642927	[0.0058-0.0115] unit decrease	NR [~ 10000000] (imputed)	N
1890	chr4	171093593	171093594	rs11132836	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	4q33	NR	rs11132836-?		1E-7	(SERPINA3)	0.1502	[NR] unit increase	Illumina [NR]	N
1890	chr4	171125986	171125987	rs79424411	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	4q33	NR	rs79424411-A	NR	1E-9		0.0249	[0.017-0.033] unit increase	Affymetrix [9000000] (imputed)	N
1890	chr4	171164918	171164919	rs77879387	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Hyperopia	10,828 European ancestry hyperopia cases, 21,416 European ancestry emmetropia controls	NA	4q33	NR	rs77879387-?	NR	8E-6		0.718903	[0.4-1.03] unit increase	NR [13958389] (imputed)	N
1890	chr4	171179939	171179940	rs17629735	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	4q33	NR	rs17629735-?	NR	2E-8				Affymetrix [NR]	N
1891	chr4	171180189	171180190	rs4692811	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (family Peptostreptococcaceae id.2042)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	4q33		rs4692811-C	NR	4E-7		5.059153	z score increase	Affymetrix, Illumina [NR] (imputed)	N
1891	chr4	171195849	171195850	rs28416452	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q33	NR	rs28416452-A	0.0122	3E-8	(HINT2)	0.105	NR unit decrease	Illumina [1671387] (imputed)	N
1891	chr4	171224045	171224046	rs17629990	30958311	Tao F	2019-04-03	J Neuromuscul Dis	Modifier Gene Candidates in Charcot-Marie-Tooth Disease Type 1A: A Case-Only Genome-Wide Association Study.	Decreased sensory function in Charcot-Marie-Tooth disease type 1A	308 European ancestry severe cases, 112 European ancestry mild cases	NA	4q33	LINC01612	rs17629990-G	0.817	2E-7		2.98	[1.98-4.48]	Illumina [600000]	N
1891	chr4	171226153	171226154	rs11946492	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	7,894 Sub-Saharan African ancestry individuals	NA	4q33		rs11946492-C	0.972352	9E-6		0.0254961	[0.014-0.037] unit decrease	Illumina [13900000] (imputed)	N
1891	chr4	171232590	171232591	rs149893336	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Stromal-cell-derived factor 1 alpha levels	5,998 Finnish ancestry individuals	NA	4q33	NR	rs149893336-G		5E-6		0.5034	[0.29-0.72] SD units increase	NR [10700000] (imputed)	N
1891	chr4	171283726	171283727	rs151041509	32650023	Gabryszewski SJ	2020-07-07	J Allergy Clin Immunol	Unsupervised Modeling and Genome-Wide Association Identify Novel Features of Allergic March Trajectories.	Allergic march (atopic dermatitis to allergic rhinitis)	115 African American child male cases, 466 African American child male controls	74 African American child male cases, 543 African American child male controls	4q33	LINC02512	rs151041509-?	NR	1E-8				Illumina [52184427] (imputed)	N
1892	chr4	171341654	171341655	rs7698024	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid vs negative)	9,913 European ancestry cases, 85,072 European ancestry controls, 2,553 Hispanic or Latin American cases, 13,086 Hispanic or Latin American controls, 506 Black or African American cases, 3,110 Black or African American controls	NA	4q33		rs7698024-?	NR	9E-6		0.17802243	[0.1-0.256] unit increase	Illumina [9939936] (imputed)	N
1892	chr4	171389079	171389080	rs17548581	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	4q33	NR	rs17548581-?	NR	1E-6				Affymetrix [NR]	N
1892	chr4	171423825	171423826	rs2661079	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	4q33	NR	rs2661079-G	0.4192	3E-8				NR [9056863] (imputed)	N
1893	chr4	171445333	171445334	rs2661075	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota (beta diversity)	858 Metropolitan French ancestry individuals	NA	4q33	NR	rs2661075-C	0.37	2E-6	(Bray-Curtis metric)	4.6352806	NR z-score increase	Illumina [5293637] (imputed)	N
1893	chr4	171521998	171521999	rs56257534	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of monounsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	4q33		rs56257534-C	0.760339	5E-10		0.028794	[0.02-0.038] unit increase	NR [11722792] (imputed)	N
1893	chr4	171552641	171552642	rs1867172	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for VLDL particles	115,082 European ancestry individuals	NA	4q33		rs1867172-C	0.759582	4E-8		0.0248766	[0.016-0.034] unit increase	NR [11722792] (imputed)	N
1893	chr4	171555532	171555533	rs78795332	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	4q33		rs78795332-C	0.760583	4E-9		0.026537	[0.018-0.035] unit increase	NR [11722792] (imputed)	N
1893	chr4	171562264	171562265	rs13118087	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	4q33		rs13118087-A	0.758961	4E-8		0.0254818	[0.016-0.035] unit increase	NR [11722792] (imputed)	N
1893	chr4	171562264	171562265	rs13118087	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	4q33		rs13118087-A	0.758961	7E-9		0.0265583	[0.018-0.036] unit increase	NR [11722792] (imputed)	N
1893	chr4	171563775	171563776	rs4491981	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large VLDL	115,082 European ancestry individuals	NA	4q33		rs4491981-C	0.758782	1E-8		0.0264388	[0.017-0.036] unit increase	NR [11722792] (imputed)	N
1893	chr4	171563775	171563776	rs4491981	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large VLDL	115,082 European ancestry individuals	NA	4q33		rs4491981-C	0.758782	4E-8		0.0256882	[0.017-0.035] unit increase	NR [11722792] (imputed)	N
1893	chr4	171563775	171563776	rs4491981	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in VLDL	115,082 European ancestry individuals	NA	4q33		rs4491981-C	0.758782	3E-8		0.0259554	[0.017-0.035] unit increase	NR [11722792] (imputed)	N
1893	chr4	171563775	171563776	rs4491981	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large VLDL	115,082 European ancestry individuals	NA	4q33		rs4491981-C	0.758782	1E-8		0.0266458	[0.017-0.036] unit increase	NR [11722792] (imputed)	N
1893	chr4	171563775	171563776	rs4491981	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large VLDL	115,082 European ancestry individuals	NA	4q33		rs4491981-C	0.758782	3E-8		0.0259742	[0.017-0.035] unit increase	NR [11722792] (imputed)	N
1893	chr4	171563775	171563776	rs4491981	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large VLDL	115,082 European ancestry individuals	NA	4q33		rs4491981-C	0.758782	2E-8		0.0265014	[0.017-0.036] unit increase	NR [11722792] (imputed)	N
1893	chr4	171563775	171563776	rs4491981	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large VLDL	115,082 European ancestry individuals	NA	4q33		rs4491981-C	0.758782	2E-8		0.0262391	[0.017-0.035] unit increase	NR [11722792] (imputed)	N
1893	chr4	171563775	171563776	rs4491981	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	4q33		rs4491981-C	0.758782	2E-8		0.0262236	[0.017-0.035] unit increase	NR [11722792] (imputed)	N
1893	chr4	171563775	171563776	rs4491981	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	4q33		rs4491981-C	0.758782	2E-8		0.0264175	[0.017-0.036] unit increase	NR [11722792] (imputed)	N
1893	chr4	171563775	171563776	rs4491981	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	4q33		rs4491981-C	0.758782	3E-8		0.0260577	[0.017-0.035] unit increase	NR [11722792] (imputed)	N
1893	chr4	171563775	171563776	rs4491981	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	4q33		rs4491981-C	0.758782	2E-8		0.0261163	[0.017-0.035] unit increase	NR [11722792] (imputed)	N
1893	chr4	171563775	171563776	rs4491981	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large VLDL particles	115,082 European ancestry individuals	NA	4q33		rs4491981-C	0.758782	1E-8		0.0264858	[0.017-0.036] unit increase	NR [11722792] (imputed)	N
1893	chr4	171563775	171563776	rs4491981	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large VLDL particles	115,082 European ancestry individuals	NA	4q33		rs4491981-C	0.758782	3E-8		0.025974	[0.017-0.035] unit increase	NR [11722792] (imputed)	N
1893	chr4	171563775	171563776	rs4491981	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of chylomicrons and extremely large VLDL particles	115,082 European ancestry individuals	NA	4q33		rs4491981-C	0.758782	5E-8		0.0254799	[0.016-0.035] unit increase	NR [11722792] (imputed)	N
1893	chr4	171563775	171563776	rs4491981	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	4q33		rs4491981-C	0.758782	1E-8		0.0266328	[0.017-0.036] unit increase	NR [11722792] (imputed)	N
1893	chr4	171563775	171563776	rs4491981	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	4q33		rs4491981-C	0.758782	5E-8		0.0258688	[0.017-0.035] unit increase	NR [11722792] (imputed)	N
1893	chr4	171563775	171563776	rs4491981	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	4q33		rs4491981-C	0.758782	1E-8		0.0266779	[0.018-0.036] unit increase	NR [11722792] (imputed)	N
1893	chr4	171566777	171566778	rs2049245	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to monounsaturated fatty acids	115,006 European ancestry individuals	NA	4q33		rs2049245-G	0.705999	8E-9		0.0252177	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
1894	chr4	171589209	171589210	rs113796581	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	4q33	NR	rs113796581-?	NR	2E-8				Illumina [7760689] (imputed)	N
1894	chr4	171632636	171632637	rs1522569	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	4q33	NA	rs1522569-T	0.8183	2E-10		0.0141	[0.0098-0.0184] unit increase	NR [~ 27400000] (imputed)	N
1894	chr4	171635470	171635471	rs111598585	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	4q33	NR	rs111598585-?	NR	8E-11				Affymetrix [~ 8270000] (imputed)	N
1894	chr4	171635470	171635471	rs111598585	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	4q33		rs111598585-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1894	chr4	171641234	171641235	rs10520189	25987507	Minica CC	2015-05-19	Behav Genet	Heritability, SNP- and Gene-Based Analyses of Cannabis Use Initiation and Age at Onset.	Cannabis use (age at onset)	5,148 European ancestry users	NA	4q33	NR	rs10520189-A		2E-6		0.29	[0.19-0.39] unit increase	NR [5896100] (imputed)	N
1894	chr4	171653329	171653330	rs191353488	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Stromal-cell-derived factor 1 alpha levels	5,998 Finnish ancestry individuals	NA	4q33	NR	rs191353488-C		6E-6		0.382	[0.18-0.58] SD units increase	NR [10700000] (imputed)	N
1895	chr4	171790787	171790788	rs1432089	28881265	Sobalska-Kwapis M	2017-09-01	Eur J Obstet Gynecol Reprod Biol	New variants near RHOJ and C2, HLA-DRA region and susceptibility to endometriosis in the Polish population-The genome-wide association study.	Endometriosis	171 European ancestry cases, 2,934 European ancestry controls	NA	4q33	NR	rs1432089-A	0.263	6E-8		1.928	[1.516-2.452]	Illumina [274400]	N
1895	chr4	171794186	171794187	rs1367998	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid respiratory support vs population)	495 European ancestry cases, 680,440 European ancestry controls, 102 Hispanic or Latin American cases, 94,330 Hispanic or Latin American controls, 39 Black or African American cases, 22,410 Black or African American controls	NA	4q33		rs1367998-?	NR	7E-6		0.4086107	[0.23-0.59] unit increase	Illumina [9842460] (imputed)	N
1895	chr4	171824548	171824549	rs2082317	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	4q33		rs2082317-T	0.5301	3E-8		0.0078	[0.0051-0.0105] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1896	chr4	171888221	171888222	rs967616	24925725	Chung SA	2014-06-12	J Am Soc Nephrol	Lupus nephritis susceptibility loci in women with systemic lupus erythematosus.	Lupus nephritis in systemic lupus erythematosus	588 European ancestry cases, 1,412 European ancestry controls	NA	4q33	LOC100506122	rs967616-?	NR	2E-6	(Additive)	1.45	[1.23-1.69]	Affymetrix, Illumina [1621689] (imputed)	N
1897	chr4	172037972	172037973	rs181823181	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	4q34.1	NR	rs181823181-?	NR	9E-9				Illumina [7760689] (imputed)	N
1898	chr4	172142516	172142517	rs72692714	34779240	Cheng B	2021-11-01	Bone Joint Res	Gut microbiota is associated with bone mineral density : an observational and genome-wide environmental interaction analysis in the UK Biobank cohort.	Total bone mineral density x gut microbiota (genus Dialister) interaction	2,293 European ancestry individuals	NA	4q34.1		rs72692714-A	NR	2E-8		0.607	[0.4-0.82] unit increase	Affymetrix [509886] (imputed)	N
1898	chr4	172149932	172149933	rs181259104	34779240	Cheng B	2021-11-01	Bone Joint Res	Gut microbiota is associated with bone mineral density : an observational and genome-wide environmental interaction analysis in the UK Biobank cohort.	Total bone mineral density x gut microbiota (genus Dialister) interaction	2,293 European ancestry individuals	NA	4q34.1		rs181259104-T	NR	2E-8		0.607	[0.4-0.82] unit increase	Affymetrix [509886] (imputed)	N
1898	chr4	172175937	172175938	rs183674373	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure in major depressive disorder-negative individuals	10,701 European ancestry cases, 39,677 European ancestry controls	NA	4q34.1	NR	rs183674373-G	0.989473	6E-6		1.1299435	[1.08-1.18]	Affymetrix [7791636] (imputed)	N
1898	chr4	172204640	172204641	rs142903570	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Endometriosis	645 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	4q34.1	Intergenic	rs142903570-?		5E-6		2.58	[1.71-3.88]	Illumina [7645193] (imputed)	N
1899	chr4	172264956	172264957	rs114015149	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q34.1	NR	rs114015149-G	0.01568	1E-8	(PHYH)	0.03181	NR unit increase	Illumina [1671387] (imputed)	N
1899	chr4	172328459	172328460	rs12643302	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 3, length of philtrum)	2,187 European ancestry individuals	NA	4q34.1	NR	rs12643302-C	0.2879	5E-6		0.1538	[0.088-0.22] unit decrease	Illumina [10677593] (imputed)	N
1900	chr4	172403575	172403576	rs7686071	32366958	Woodbury-Smith MR	2020-05-04	Sci Rep	Genome-wide association study of emotional empathy in children.	Emotional recognition	2,382 European ancestry boys	NA	4q34.1	NR	rs7686071-C	0.15	5E-7		564.53	[345.25-783.81] unit decrease	Illumina [27449291] (imputed)	N
1900	chr4	172427072	172427073	rs11732657	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	4q34.1		rs11732657-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1900	chr4	172427072	172427073	rs11732657	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	4q34.1	Intergenic	rs11732657-A	0.7472	4E-15	(MTAG)	0.0149	[0.011-0.019] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1900	chr4	172427072	172427073	rs11732657	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	4q34.1		rs11732657-A	0.7504	6E-15		0.0126	[0.0095-0.0157] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1900	chr4	172427072	172427073	rs11732657	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	4q34.1	Intergenic	rs11732657-A	0.7504	8E-18	(MTAG)	0.013	[0.01-0.016] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1900	chr4	172431359	172431360	rs10009715	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	4q34.1	Intergenic	rs10009715-T	0.163	8E-13		0.022	[0.016-0.028] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1900	chr4	172456258	172456259	rs1609375	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	4q34.1	NR	rs1609375-G	0.162028	2E-9		0.05721256	[0.039-0.076] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1900	chr4	172486864	172486865	rs11132911	29064910	Kure Fischer E	2017-10-23	Int Clin Psychopharmacol	A molecular pathway analysis informs the genetic risk for arrhythmias during antipsychotic treatment.	Antipsychotic drug-induced QTc interval change in schizophrenia	434 European ancestry individuals, 202 African ancestry individuals, 25 individuals	NA	4q34.1	NR	rs11132911-T	NR	7E-6		4500.0	unit decrease	Affymetrix, Perlegen [1785543] (imputed)	N
1900	chr4	172489347	172489348	rs141925466	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference	1,254 whole genome sequenced European ancestry individuals, 3,074 whole genome sequenced individuals, 29,716 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 701 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,050 Mylopotamos (founder/genetic isolate) individuals, 883 Pomak (founder/genetic isolate) individuals	205,909 European ancestry individuals	4q34.1	RP11-97E7.1	rs141925466-A	0.9785	4E-6		0.1496	[0.086-0.213] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1901	chr4	172502333	172502334	rs7688547	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	4q34.1		rs7688547-C	0.8176	4E-11	(conditional-joint)	0.0121	[0.0086-0.0156] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1901	chr4	172557878	172557879	rs9312509	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Spatial processing	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	4q34.1	intergenic	rs9312509-A	NR	6E-6		0.122464426	[0.071-0.174] unit decrease	Illumina [> 6200000] (imputed)	N
1901	chr4	172558296	172558297	rs9884559	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	4q34.1	GALNT7	rs9884559-?	NR	5E-6	(PC 40:6)	0.289657	[0.17-0.41] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1902	chr4	172660340	172660341	rs72978029	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q34.1	NR	rs72978029-G	0.01394	1E-8	(APRT)	0.1818	NR unit increase	Illumina [1671387] (imputed)	N
1902	chr4	172667335	172667336	rs147039784	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	4q34.1	Intergenic	rs147039784-G	NR	2E-6		0.0764153	[0.045-0.108] unit decrease	Illumina [13519193] (imputed)	N
1902	chr4	172667335	172667336	rs147039784	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	4q34.1	Intergenic	rs147039784-G	NR	6E-6		0.0666367	[0.038-0.095] unit decrease	Illumina [13520550] (imputed)	N
1902	chr4	172668576	172668577	rs114834275	28084903	Hallberg P	2017-01-13	Pharmacogenomics	Genetic variants associated with angiotensin-converting enzyme inhibitor-induced cough: a genome-wide association study in a Swedish population.	Cough in response to angiotensin-converting enzyme inhibitor drugs	123 European ancestry cases, 1,345 European and unknown ancestry controls, 1 Middle Eastern ancestry case	NR	4q34.1	NR	rs114834275-?	NR	2E-6		3.84	[2.21-6.69]	Illumina [8600000] (imputed)	N
1903	chr4	172780288	172780289	rs780544227	34620984	Skuladottir AT	2021-10-07	Commun Biol	A genome-wide meta-analysis uncovers six sequence variants conferring risk of vertigo.	Vertigo	48,072 European ancestry cases, 894,541 European ancestry controls	NA	4q34.1		rs780544227-A	NR	2E-6		2.02648		Affymetrix, Illumina [62056310] (imputed)	N
1905	chr4	173041629	173041630	rs79484241	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial squamous cell lung carcinoma	367 European ancestry cases, 31,563 European ancestry controls	NA	4q34.1	GALNTL6	rs79484241-C	0.008	3E-6		4.46	[2.38-8.36]	Illumina [7959153] (imputed)	N
1905	chr4	173051880	173051881	rs143431075	35232999	Garcia-Etxebarria K	2022-03-01	Sci Rep	Local genetic variation of inflammatory bowel disease in Basque population and its effect in risk prediction.	Crohn's disease	284 European ancestry cases, 935 European ancestry controls	NA	4q34.1		rs143431075-A	0.025	4E-6		3.6		Illumina [5411261] (imputed)	N
1905	chr4	173076887	173076888	rs6852117	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	4q34.1	GALNTL6	rs6852117-C	0.5802	6E-12		0.0140188895	[0.01-0.018] unit increase	Affymetrix [11514654] (imputed)	N
1905	chr4	173076887	173076888	rs6852117	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	4q34.1		rs6852117-?	NR	6E-8				NR [~ 8900000] (imputed)	N
1905	chr4	173086491	173086492	rs6811532	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	4q34.1	NR	rs6811532-G	0.388	5E-10		0.00688302	[0.0047-0.0091] unit decrease	NR [9732723] (imputed)	N
1906	chr4	173238413	173238414	rs143943063	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q34.1	NR	rs143943063-C	0.0122	7E-9	(PRPS2)	0.1412	NR unit increase	Illumina [1671387] (imputed)	N
1906	chr4	173238413	173238414	rs143943063	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q34.1	NR	rs143943063-C	0.0122	1E-9	(PRPS1)	0.03744	NR unit increase	Illumina [1671387] (imputed)	N
1907	chr4	173392197	173392198	rs756771238	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Treatment or medication use - menophase tablet (UKB data field 20003_1140912212)	121 European ancestry cases, 247,387 European ancestry controls	NA	4q34.1		rs756771238-G	7.005E-4	1E-10		41.18	[28.61-53.75] unit increase	NR [11842647] (imputed)	N
1908	chr4	173417765	173417766	rs183148163	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial squamous cell lung carcinoma	367 European ancestry cases, 31,563 European ancestry controls	NA	4q34.1	GALNTL6	rs183148163-T	0.008	5E-6		5.2	[2.56-10.58]	Illumina [7959153] (imputed)	N
1909	chr4	173552422	173552423	rs185114853	33106475	Li QS	2020-10-26	Transl Psychiatry	Genome-wide association studies of antidepressant class response and treatment-resistant depression.	Response to serotonin-norepinephrine reuptake inhibitors (responders vs non-responders)	4,030 European ancestry responders, 3,049 European ancestry non-responders	NA	4q34.1	NR	rs185114853-T	NR	7E-6		0.2947	NR	Illumina [at least 560000] (imputed)	N
1909	chr4	173597015	173597016	rs1437842	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	4q34.1	NA	rs1437842-A	0.4907	8E-10		0.0106	[0.0073-0.0139] unit decrease	NR [~ 27400000] (imputed)	N
1909	chr4	173643639	173643640	rs17058802	30263053	Deng X	2018-09-17	BMC Proc	Genome-wide association study for multiple phenotype analysis.	Triglyceride levels	821 individuals	NA	4q34.1	NA	rs17058802-?		6E-7				Affymetrix [587358]	N
1909	chr4	173643639	173643640	rs17058802	30263053	Deng X	2018-09-17	BMC Proc	Genome-wide association study for multiple phenotype analysis.	HDL cholesterol and triglyceride levels (pleiotropy)	821 individuals	NA	4q34.1	NA	rs17058802-?	NR	2E-6				Affymetrix [587358]	N
1909	chr4	173653364	173653365	rs144768167	33106475	Li QS	2020-10-26	Transl Psychiatry	Genome-wide association studies of antidepressant class response and treatment-resistant depression.	Response to serotonin-norepinephrine reuptake inhibitors (responders vs non-responders)	4,030 European ancestry responders, 3,049 European ancestry non-responders	NA	4q34.1	NR	rs144768167-C	NR	9E-6		0.3227	NR	Illumina [at least 560000] (imputed)	N
1910	chr4	173675995	173675996	rs546171661	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	4q34.1		rs546171661-C	NR	3E-8		0.0117	[0.0076-0.0158] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1911	chr4	173886128	173886129	rs78890674	31598132	Donati G	2019-06-30	Mind Brain Educ	Genome-Wide Association Study of Latent Cognitive Measures in Adolescence: Genetic Overlap With Intelligence and Education.	Working memory	4,611 European ancestry adolescents	NA	4q34.1	GALNTL6	rs78890674-?	NR	3E-6		0.57	[0.33-0.81] unit decrease	Illumina [6319684] (imputed)	N
1912	chr4	173967545	173967546	rs10519735	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	4q34.1	GALNT7	rs10519735-?	NR	9E-6	(lactate)	0.4288644	[0.24-0.62] unit increase	Affymetrix [at least 2500000] (imputed)	N
1912	chr4	174008758	174008759	rs13117856	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	4q34.1		rs13117856-A	0.7054	5E-8		0.0084	[0.0055-0.0113] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1912	chr4	174008758	174008759	rs13117856	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	4q34.1	Intergenic	rs13117856-A	0.7054	2E-9	(MTAG)	0.0086	[0.0059-0.0113] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1912	chr4	174010312	174010313	rs78913783	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Unilateral cleft lip	184 Asian ancestry cases, 151 European ancestry cases, 167 Hispanic cases, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	4q34.1	NR	rs78913783-?	NR	7E-6		0.45	[0.4-0.51]	Illumina [539000] (imputed)	N
1913	chr4	174089237	174089238	rs6835098	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Dementia and core Alzheimer's disease neuropathologic changes	up to 3,887 cases, up to 1,027 controls	NA	4q34.1	intergenic	rs6835098-T	0.3308	5E-6	(Primary)	0.2278	[0.11-0.35] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1913	chr4	174094939	174094940	rs62341097	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Neuritic plaque	up to 4,232 individuals	NA	4q34.1	GALNT7	rs62341097-A	0.0458	6E-9	(Case/control)	1.1474	[0.76-1.53] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1913	chr4	174132984	174132985	rs13116270	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Problematic alcohol use (MTAG)	972,915 European ancestry individuals	NA	4q34.1	NR	rs13116270-A	0.1727	2E-9		0.016330346	[0.011-0.022] unit increase	Affymetrix [10613246] (imputed)	N
1913	chr4	174132984	174132985	rs13116270	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol consumption (drinks per week) (MTAG)	972,915 European ancestry individuals	NA	4q34.1	NR	rs13116270-A	0.181	3E-10		0.014111718	[0.0097-0.0185] unit increase	Affymetrix [NR] (imputed)	N
1913	chr4	174151618	174151619	rs13125240	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	4q34.1	Intergenic	rs13125240-T	0.6866	2E-8	(MTAG)	0.0079	[0.0052-0.0106] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1914	chr4	174282007	174282008	rs533833761	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris color (L* coordinate)	329 South Asian ancestry individuals		4q34.1	intergenic	rs533833761-G	0.0127404	4E-6		1.91385	[1.12-2.71] unit decrease	Illumina [640625] (imputed)	N
1915	chr4	174336589	174336590	rs147792504	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	4q34.1	NR	rs147792504-T		3E-11		0.27	[0.19-0.35] unit increase	NR [NR]	N
1915	chr4	174336589	174336590	rs147792504	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	4q34.1	GALNT7, SCRG1	rs147792504-?		2E-15				Affymetrix, Illumina [NR] (imputed)	N
1915	chr4	174352038	174352039	rs200699422	28654678	Mandage R	2017-06-27	PLoS One	Genetic factors affecting EBV copy number in lymphoblastoid cell lines derived from the 1000 Genome Project samples.	Epstein-Barr virus copy number in lymphoblastoid cell lines	389 East Asian ancestry individuals, 189 South Asian ancestry individuals, 492 European ancestry individuals, 467 Sub-Saharan African ancestry individuals, 59 African American individuals, 157 Hispanic/Latino individuals	NA	4q34.1	SCRG1, HAND2	rs200699422-?	NR	5E-6				NR [at least 880000]	N
1915	chr4	174378003	174378004	rs12505328	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Chin dimples	58,032 European ancestry cases, 13,457 European ancestry controls	NA	4q34.1	SCRG1, HAND2	rs12505328-?	NR	2E-11		1.106	[1.074-1.139]	Illumina [13537761] (imputed)	N
1915	chr4	174383238	174383239	rs2119790	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	4q34.1	SCRG1	rs2119790-G	0.544545824455506	3E-7		0.0027521	[NR] unit increase	Affymetrix [> 30000000] (imputed)	N
1915	chr4	174437997	174437998	rs6841704	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	4q34.1		rs6841704-C	NR	5E-10		0.0138	[0.0095-0.0181] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
1915	chr4	174438584	174438584	rs143490035	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	4q34.1		rs143490035-GT	0.050373	6E-13		0.037491716	[0.027-0.048] unit decrease	Affymetrix [93095623] (imputed)	N
1915	chr4	174438584	174438584	rs143490035	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	4q34.1	NR	rs143490035-I	0.050393	1E-11		0.031853	[0.023-0.041] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1915	chr4	174444901	174444902	rs17059534	28416822	Low SK	2017-04-17	Nat Genet	Identification of six new genetic loci associated with atrial fibrillation in the Japanese population.	Atrial fibrillation	8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls	3,120 Japanese ancestry cases, 125,064 Japanese ancestry controls, 15,993 European ancestry cases, 113,719 European ancestry controls	4q34.1	HAND2	rs17059534-A	0.081	3E-10	(Japanese)	1.201	[1.134-1.271]	Illumina [5018049] (imputed)	N
1915	chr4	174447348	174447349	rs10520260	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	4q34.1	HAND2, HAND2-AS1	rs10520260-A	0.679	6E-10		1.05	[1.03-1.06]	Illumina [34740186] (imputed)	N
1915	chr4	174447348	174447349	rs10520260	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	4q34.1	HAND2	rs10520260-A	0.69	9E-12		1.06	[1.04-1.07]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1915	chr4	174447348	174447349	rs10520260	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	4q34.1	HAND2	rs10520260-A	0.68	8E-10	(EA)	1.05	[1.04-1.07]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1915	chr4	174448142	174448143	rs10024737	33990960	Hong M	2021-05-14	Eur J Clin Invest	Ethnic similarities in genetic polymorphisms associated with atrial fibrillation: Far East Asian vs European populations.	Atrial fibrillation	9,118 East Asian ancestry cases, 33,467 East Asian ancestry controls	NA	4q34.1	HAND2, HAND2-AS1	rs10024737-C	NR	2E-13		1.33	[1.23-1.43]	NR [2286360] (imputed)	N
1915	chr4	174451568	174451569	rs3822127	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Arrhythmia	17,861 Japanese ancestry cases, 194,592 Japanese ancestry controls	NA	4q34.1		rs3822127-T	0.112471428	2E-14		1.1515421	[1.110649222-1.193940447]	Illumina [8919992] (imputed)	N
1916	chr4	174456857	174456858	rs4695846	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 53)	3,566 European ancestry individuals	4,680 European ancestry individuals	4q34.1		rs4695846-A	0.388357705	2E-19				Illumina [7417619] (imputed)	N
1916	chr4	174458900	174458901	rs13131421	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	4q34.1	HAND2	rs13131421-C	0.5338	3E-20		0.5857	[0.46-0.71] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1916	chr4	174467834	174467835	rs6824178	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	4q34.1	HAND2	rs6824178-T	0.563486	7E-11	(-118 ms)	0.0357078	[0.025-0.047] unit increase	Affymetrix [10000000] (imputed)	N
1916	chr4	174467834	174467835	rs6824178	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	4q34.1	HAND2	rs6824178-T	0.563486	7E-11	(-116 ms)	0.0355526	[0.025-0.047] unit increase	Affymetrix [10000000] (imputed)	N
1916	chr4	174467834	174467835	rs6824178	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	4q34.1	HAND2	rs6824178-T	0.563486	4E-9	(-122 ms)	0.0328319	[0.022-0.044] unit increase	Affymetrix [10000000] (imputed)	N
1916	chr4	174467834	174467835	rs6824178	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	4q34.1	HAND2	rs6824178-T	0.563486	4E-10	(-120 ms)	0.0344625	[0.023-0.046] unit increase	Affymetrix [10000000] (imputed)	N
1916	chr4	174467834	174467835	rs6824178	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	4q34.1	HAND2	rs6824178-T	0.563486	4E-10	(-112 ms)	0.0338368	[0.023-0.045] unit increase	Affymetrix [10000000] (imputed)	N
1916	chr4	174467834	174467835	rs6824178	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	4q34.1	HAND2	rs6824178-T	0.563486	2E-8	(-124 ms)	0.0315206	[0.02-0.043] unit increase	Affymetrix [10000000] (imputed)	N
1916	chr4	174467834	174467835	rs6824178	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	4q34.1	HAND2	rs6824178-T	0.563486	2E-10	(-114 ms)	0.0341901	[0.023-0.045] unit increase	Affymetrix [10000000] (imputed)	N
1916	chr4	174467834	174467835	rs6824178	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	4q34.1	HAND2	rs6824178-T	0.563486	2E-10	(-110 ms)	0.0346522	[0.024-0.046] unit increase	Affymetrix [10000000] (imputed)	N
1916	chr4	174500805	174500806	rs145681168	31537649	Salem RM	2019-09-19	J Am Soc Nephrol	Genome-Wide Association Study of Diabetic Kidney Disease Highlights Biology Involved in Glomerular Basement Membrane Collagen.	Microalbuminuria in type 1 diabetes	2,447 European ancestry cases, 12,113 European ancestry controls	NA	4q34.1	HAND2-AS1	rs145681168-G	0.014	2E-7		5.53	[NR]	Illumina [up to 49000000] (imputed)	N
1916	chr4	174515681	174515682	rs12646107	22952603	Hart AB	2012-08-28	PLoS One	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 10 individuals	NA	4q34.1	intergenic	rs12646107-?	NR	4E-6	(SF8)			Affymetrix [5476100] (imputed)	N
1916	chr4	174547156	174547157	rs4129566	23958962	Gelernter J	2013-08-20	Mol Psychiatry	Genome-wide association study of cocaine dependence and related traits: FAM53B identified as a risk gene.	Cocaine dependence	1,809 European ancestry cases, 570 European ancestry controls, 2,482 African American cases, 836 African American controls	4,498 European ancestry individuals, 2,114 African American individuals	4q34.1	intergenic	rs4129566-?	NR	3E-6	(AA)			Illumina [37426733] (imputed)	N
1916	chr4	174547156	174547157	rs4129566	23958962	Gelernter J	2013-08-20	Mol Psychiatry	Genome-wide association study of cocaine dependence and related traits: FAM53B identified as a risk gene.	Cocaine dependence	1,809 European ancestry cases, 570 European ancestry controls, 2,482 African American cases, 836 African American controls	4,498 European ancestry individuals, 2,114 African American individuals	4q34.1	intergenic	rs4129566-?	NR	3E-6				Illumina [37426733] (imputed)	N
1916	chr4	174554831	174554832	rs11944332	23958962	Gelernter J	2013-08-20	Mol Psychiatry	Genome-wide association study of cocaine dependence and related traits: FAM53B identified as a risk gene.	Cocaine dependence	1,809 European ancestry cases, 570 European ancestry controls, 2,482 African American cases, 836 African American controls	4,498 European ancestry individuals, 2,114 African American individuals	4q34.1	RANP6	rs11944332-?	NR	2E-6	(AA)			Illumina [37426733] (imputed)	N
1916	chr4	174554831	174554832	rs11944332	23958962	Gelernter J	2013-08-20	Mol Psychiatry	Genome-wide association study of cocaine dependence and related traits: FAM53B identified as a risk gene.	Cocaine dependence	1,809 European ancestry cases, 570 European ancestry controls, 2,482 African American cases, 836 African American controls	4,498 European ancestry individuals, 2,114 African American individuals	4q34.1	RANP6	rs11944332-?	NR	2E-6				Illumina [37426733] (imputed)	N
1916	chr4	174574405	174574406	rs11723864	23028342	Sandholm N	2012-09-20	PLoS Genet	New susceptibility loci associated with kidney disease in type 1 diabetes.	Type 1 diabetes nephropathy	Up to 2,916 European ancestry Type 1 Diabetes cases with nephropathy, 3,315 European ancestry Type 1 Diabetes cases without nephropathy	Up to 1,493 European ancestry Type 1 Diabetes cases with nephropathy, 3,191 European ancestry Type 1 Diabetes cases without nephropathy	4q34.1	intergenic	rs11723864-G	0.11	7E-7	(ESRD)	1.51	[1.29-1.78]	Affymetrix, Illumina [~ 2500000] (imputed)	N
1916	chr4	174582066	174582067	rs10005540	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	4q34.1		rs10005540-?	NR	4E-20				NR [~ 8900000] (imputed)	N
1916	chr4	174584662	174584663	rs17059668	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Pulse pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	4q34.1	chr4mb174	rs17059668-C	0.92	3E-8		0.332	[0.21-0.45] unit decrease	Affymetrix [~ 9800000] (imputed)	N
1917	chr4	174599458	174599459	rs4615152	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Arrhythmia	17,861 Japanese ancestry cases, 194,592 Japanese ancestry controls	NA	4q34.1		rs4615152-C	NR	3E-12		1.083827	[1.05953347116282-1.10867761570942]	Illumina [8919992] (imputed)	N
1917	chr4	174599458	174599459	rs4615152	28460022	Lee JY	2017-04-27	Eur Heart J	Korean atrial fibrillation network genome-wide association study for early-onset atrial fibrillation identifies novel susceptibility loci.	Early onset atrial fibrillation	672 Korean ancestry cases, 3,700 Korean ancestry controls	200 Korean ancestry cases, 1,812 Korean ancestry controls	4q34.1	HAND2	rs4615152-C	0.42	1E-12		1.51	[1.35-1.68]	Affymetrix [642422]	N
1917	chr4	174602047	174602048	rs11727767	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	4q34.1	MORF4	rs11727767-A	0.447	7E-6	(Ghrelin )	0.03	[NR] pg/100 uL increase	Illumina [899892]	N
1917	chr4	174604103	174604104	rs7698692	28416822	Low SK	2017-04-17	Nat Genet	Identification of six new genetic loci associated with atrial fibrillation in the Japanese population.	Atrial fibrillation	8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls	3,120 Japanese ancestry cases, 125,064 Japanese ancestry controls, 15,993 European ancestry cases, 113,719 European ancestry controls	4q34.1	HAND2	rs7698692-A	0.505	8E-16		1.129	[1.096-1.163]	Illumina [5018049] (imputed)	N
1917	chr4	174611709	174611710	rs191328328	31006051	Kharazmi M	2019-04-20	Calcif Tissue Int	A Genome-Wide Association Study of Bisphosphonate-Associated Atypical Femoral Fracture.	Bisphosphonate-associated atypical femoral fracture	50 European ancestry cases, 1 Chilean ancestry case, 4,891 European ancestry controls	NA	4q34.1	intergenic	rs191328328-C	0.009	2E-7		8.951	[3.917-20.46]	Illumina [7585874] (imputed)	N
1917	chr4	174612202	174612203	rs138799506	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Inguinal hernia	16,725 European ancestry cases, 428,356 European ancestry controls, 1,664 East Asian ancestry cases, 177,062 East Asian ancestry controls	NA	4q34.1		rs138799506-C	NR	6E-11		0.0843	[0.059-0.11] unit increase	Affymetrix, Illumina [25841416] (imputed)	N
1917	chr4	174629404	174629405	rs115832704	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Pulse pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	4q34.1	chr4mb174	rs115832704-T	0.02488398	8E-6		0.4805	[0.27-0.69] unit decrease	Affymetrix [~ 9800000] (imputed)	N
1917	chr4	174641183	174641184	rs12648245	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	4q34.1	HAND2, HAND2-AS1	rs12648245-T	0.924	3E-13		1.1	[1.07-1.12]	Illumina [34740186] (imputed)	N
1917	chr4	174655913	174655914	rs4521323	23502783	Weinhold N	2013-03-17	Nat Genet	The CCND1 c.870G>A polymorphism is a risk factor for t(11;14)(q13;q32) multiple myeloma.	Multiple myeloma (IgH translocation)	up to 1,660 European ancestry cases, 7,306 European ancestry controls		4q34.1	NR	rs4521323-C	0.56	9E-6	(Any IgH translocation vs. controls)	1.28	[1.15-1.43]	Illumina [414804] (imputed)	N
1917	chr4	174656836	174656837	rs55824078	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	4q34.1	intergenic	rs55824078-A	0.153	4E-8		0.1923	[0.12-0.26] mmHg increase	Affymetrix [NR] (imputed)	N
1917	chr4	174656888	174656889	rs67846163	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta minimum area	35,110 individuals	NA	4q34.1		rs67846163-A	0.772532	6E-20		0.0755161	[0.059-0.092] decrease	Affymetrix [NR]	N
1917	chr4	174656888	174656889	rs67846163	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta maximum area	31,908 individuals	NA	4q34.1		rs67846163-A	0.772537	1E-19		0.0799181	[0.062-0.097] decrease	Affymetrix [NR]	N
1917	chr4	174693285	174693286	rs62337885	34162658	Quinn MC	2021-06-23	Cancer Epidemiol Biomarkers Prev	Identification of a locus near ULK1 associated with progression-free survival in ovarian cancer.	Progression free survival in serous epithelial ovarian cancer treated with carboplatin and paclitaxel	1,751 European ancestry individuals	NA	4q34.1	NR	rs62337885-A		7E-6		0.2342	[0.13-0.34] unit increase	Illumina [12759548] (imputed)	N
1918	chr4	174720678	174720679	rs147170032	34779240	Cheng B	2021-11-01	Bone Joint Res	Gut microbiota is associated with bone mineral density : an observational and genome-wide environmental interaction analysis in the UK Biobank cohort.	Total bone mineral density x gut microbiota (genus Dialister) interaction	2,293 European ancestry individuals	NA	4q34.1		rs147170032-A	NR	3E-8		0.567	[0.37-0.77] unit increase	Affymetrix [509886] (imputed)	N
1918	chr4	174723834	174723835	rs4695886	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	4q34.1		rs4695886-?	NR	5E-11				NR [~ 8900000] (imputed)	N
1918	chr4	174723834	174723835	rs4695886	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	4q34.1		rs4695886-?	NR	2E-9		0.0129689	[0.0088-0.0171] unit decrease	Affymetrix [20259828] (imputed)	N
1918	chr4	174726634	174726635	rs4579095	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	4q34.1	NBLA00301	rs4579095-G	0.40665300000000004	8E-10		0.019033	[0.013-0.025] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
1919	chr4	174851923	174851924	rs76383255	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	4q34.1	FBXO8	rs76383255-A	0.956495	3E-8	(354 ms)	0.0761214	[0.049-0.103] unit increase	Affymetrix [10000000] (imputed)	N
1919	chr4	174882872	174882873	rs72698178	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs none or mild)	136 Finnish ancestry severe erosion cases, 1011 Finnish ancestry mild or no erosion controls	NA	4q34.1	FBXO8	rs72698178-?	NR	5E-6				Illumina [NR] (imputed)	N
1919	chr4	174882872	174882873	rs72698178	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs non-severe)	86 Finnish ancestry male severe erosion cases, 50 Finnish ancestry female severe erosion cases, 817 Finnish ancestry male non-severe erosion controls, 991 Finnish ancestry female non-severe erosion controls	NA	4q34.1	FBXO8	rs72698178-?	NR	9E-6		2.0	[1.46-2.71]	Illumina [NR] (imputed)	N
1919	chr4	174890598	174890599	rs79985907	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs non-severe)	86 Finnish ancestry male severe erosion cases, 50 Finnish ancestry female severe erosion cases, 817 Finnish ancestry male non-severe erosion controls, 991 Finnish ancestry female non-severe erosion controls	NA	4q34.1	NR	rs79985907-?	NR	2E-6				Illumina [NR] (imputed)	N
1919	chr4	174900198	174900199	rs10001237	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs non-severe)	86 Finnish ancestry male severe erosion cases, 50 Finnish ancestry female severe erosion cases, 817 Finnish ancestry male non-severe erosion controls, 991 Finnish ancestry female non-severe erosion controls	NA	4q34.1	NR	rs10001237-?	NR	5E-6				Illumina [NR] (imputed)	N
1919	chr4	174901777	174901778	rs6814144	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs non-severe)	86 Finnish ancestry male severe erosion cases, 50 Finnish ancestry female severe erosion cases, 817 Finnish ancestry male non-severe erosion controls, 991 Finnish ancestry female non-severe erosion controls	NA	4q34.1	NR	rs6814144-?	NR	4E-6				Illumina [NR] (imputed)	N
1919	chr4	174918893	174918894	rs56848603	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs non-severe)	86 Finnish ancestry male severe erosion cases, 50 Finnish ancestry female severe erosion cases, 817 Finnish ancestry male non-severe erosion controls, 991 Finnish ancestry female non-severe erosion controls	NA	4q34.1	NR	rs56848603-?	NR	6E-6				Illumina [NR] (imputed)	N
1919	chr4	174920281	174920282	rs59193587	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs non-severe)	86 Finnish ancestry male severe erosion cases, 50 Finnish ancestry female severe erosion cases, 817 Finnish ancestry male non-severe erosion controls, 991 Finnish ancestry female non-severe erosion controls	NA	4q34.1	NR	rs59193587-?	NR	6E-6				Illumina [NR] (imputed)	N
1919	chr4	174923158	174923159	rs4496561	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs non-severe)	86 Finnish ancestry male severe erosion cases, 50 Finnish ancestry female severe erosion cases, 817 Finnish ancestry male non-severe erosion controls, 991 Finnish ancestry female non-severe erosion controls	NA	4q34.1	NR	rs4496561-?	NR	7E-6				Illumina [NR] (imputed)	N
1919	chr4	174924520	174924521	rs72698201	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs non-severe)	86 Finnish ancestry male severe erosion cases, 50 Finnish ancestry female severe erosion cases, 817 Finnish ancestry male non-severe erosion controls, 991 Finnish ancestry female non-severe erosion controls	NA	4q34.1	NR	rs72698201-?	NR	7E-6				Illumina [NR] (imputed)	N
1919	chr4	174925622	174925623	rs72698202	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs non-severe)	86 Finnish ancestry male severe erosion cases, 50 Finnish ancestry female severe erosion cases, 817 Finnish ancestry male non-severe erosion controls, 991 Finnish ancestry female non-severe erosion controls	NA	4q34.1	NR	rs72698202-?	NR	7E-6				Illumina [NR] (imputed)	N
1919	chr4	174927440	174927441	rs6817378	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs non-severe)	86 Finnish ancestry male severe erosion cases, 50 Finnish ancestry female severe erosion cases, 817 Finnish ancestry male non-severe erosion controls, 991 Finnish ancestry female non-severe erosion controls	NA	4q34.1	NR	rs6817378-?	NR	7E-6				Illumina [NR] (imputed)	N
1919	chr4	174940677	174940678	rs12649339	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs non-severe)	86 Finnish ancestry male severe erosion cases, 50 Finnish ancestry female severe erosion cases, 817 Finnish ancestry male non-severe erosion controls, 991 Finnish ancestry female non-severe erosion controls	NA	4q34.1	NR	rs12649339-?	NR	4E-6				Illumina [NR] (imputed)	N
1919	chr4	174941435	174941436	rs57545511	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs non-severe)	86 Finnish ancestry male severe erosion cases, 50 Finnish ancestry female severe erosion cases, 817 Finnish ancestry male non-severe erosion controls, 991 Finnish ancestry female non-severe erosion controls	NA	4q34.1	NR	rs57545511-?	NR	4E-6				Illumina [NR] (imputed)	N
1919	chr4	174948360	174948361	rs61363860	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs non-severe)	86 Finnish ancestry male severe erosion cases, 50 Finnish ancestry female severe erosion cases, 817 Finnish ancestry male non-severe erosion controls, 991 Finnish ancestry female non-severe erosion controls	NA	4q34.1	NR	rs61363860-?	NR	4E-6				Illumina [NR] (imputed)	N
1919	chr4	174951202	174951203	rs768672	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs non-severe)	86 Finnish ancestry male severe erosion cases, 50 Finnish ancestry female severe erosion cases, 817 Finnish ancestry male non-severe erosion controls, 991 Finnish ancestry female non-severe erosion controls	NA	4q34.1	NR	rs768672-?	NR	4E-6				Illumina [NR] (imputed)	N
1920	chr4	174981611	174981612	rs9991779	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric bone mineral content (hip)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	4q34.1	NR	rs9991779-C	0.235	3E-8	(Females)	0.279745	[0.18-0.38] unit decrease	Illumina [~ 6600000] (imputed)	N
1920	chr4	175027515	175027516	rs55768019	26365420	Mbarek H	2015-09-14	Am J Med Genet B Neuropsychiatr Genet	The genetics of alcohol dependence: Twin and SNP-based heritability, and genome-wide association study based on AUDIT scores.	Alcohol dependence	1,374 European ancestry cases and 6,468 European ancestry controls from 7,694 twin pairs	NA	4q34.1	HPGD	rs55768019-G	0.42	8E-7		1.25	[1.17-1.33]	Affymetrix, Illumina, Perlegen [6464174] (imputed)	N
1920	chr4	175047506	175047506	rs3054104	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 53)	3,566 European ancestry individuals	4,680 European ancestry individuals	4q34.1		rs3054104-CAT	0.318597112	3E-21				Illumina [7417619] (imputed)	N
1920	chr4	175071485	175071486	rs17275866	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Chin dimples	58,032 European ancestry cases, 13,457 European ancestry controls	NA	4q34.1	HAND2, FBXO8	rs17275866-?	NR	3E-17		1.1428571	[1.11-1.18]	Illumina [13537761] (imputed)	N
1920	chr4	175071601	175071602	rs12507634	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	4q34.1		rs12507634-G	NR	1E-8		0.0121	[0.008-0.0162] unit increase	Affymetrix, Illumina [20535842] (imputed)	N
1920	chr4	175071601	175071602	rs12507634	23400010	Del-Aguila JL	2013-02-12	Pharmacogenomics J	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NA	4q34.1	FBXO8	rs12507634-G	0.19	4E-6	(AA-glucose response)	4.84	[2.78-6.9] mg/dL decrease	Affymetrix, Illumina [> 2000000] (imputed)	N
1920	chr4	175095874	175095875	rs76930906	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	4q34.1	Intergenic	rs76930906-A	NR	3E-11	(between families)	6.631	unit decrease	Affymetrix [up to 15107142] (imputed)	N
1920	chr4	175099661	175099662	rs7686523	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-hip ratio	1,254 whole genome sequenced European ancestry individuals, 3,071 whole genome sequenced individuals, 29,723 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,053 Mylopotamos (founder/genetic isolate) individuals, 879 Pomak (founder/genetic isolate) individuals	206,053 European ancestry individuals	4q34.1	RP11-148L24.1	rs7686523-A	0.9316	3E-6		0.0893	[0.052-0.127] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1921	chr4	175125428	175125429	rs115683773	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	4q34.1	intergenic	rs115683773-A	0.018	7E-6		4.48	[2.19-9.17]	Illumina [1556551]	N
1921	chr4	175131373	175131374	rs1396190	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	4q34.1		rs1396190-?	NR	5E-9		0.0128053	[0.0083-0.0173] unit decrease	Affymetrix [20259828] (imputed)	N
1921	chr4	175133900	175133901	rs1032988	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	4q34.1		rs1032988-?	NR	9E-11				NR [~ 8900000] (imputed)	N
1922	chr4	175300778	175300779	rs6852435	21177773	Moyer AM	2010-12-22	Toxicol Sci	Acetaminophen-NAPQI hepatotoxicity: a cell line model system genome-wide association study.	Response to acetaminophen (hepatotoxicity)	60 European ancestry lymphoblastoid cell lines, 56 African American lymphoblastoid cell lines, 60 Han Chinese American lymphoblastoid cell lines	NA	4q34.1	KIAA1712	rs6852435-?	0.27	6E-6				Affymetrix, Illumina [1348864]	N
1923	chr4	175388124	175388125	rs3846297	28203683	Heit JA	2017-02-16	Thromb Haemost	Identification of unique venous thromboembolism-susceptibility variants in African-Americans.	Venous thromboembolism adjusted for sickle cell variant rs77121243-T	393 African American cases, 4,941 African American controls.	NR	4q34.1	HPGD	rs3846297-T	0.0787	3E-6		1.777	[1.394-2.265]	Affymetrix, Illumina [14074516] (imputed)	N
1923	chr4	175428729	175428730	rs17060573	34671089	Hikino K	2021-10-21	J Hum Genet	Genome-wide association study of colorectal polyps identified highly overlapping polygenic architecture with colorectal cancer.	Colorectal polyp and colorectal cancer (MTAG)	11,292 East Asian ancestry cases, 237,990 East Asian ancestry controls	NA	4q34.1		rs17060573-?	NR	4E-8	(Colorectal polyp)	0.93	[0.91-0.96]	Illumina [NR] (imputed)	N
1923	chr4	175461516	175461517	rs17295603	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque score in type 2 diabetes	691 African American individuals	205 African American individuals	4q34.1	intergenic	rs17295603-?	NR	8E-6		1.185	[0.53-1.84] unit decrease	Illumina [at least 13000000] (imputed)	N
1923	chr4	175461529	175461530	rs2555639	30920136	Stapleton CP	2019-02-27	Am J Transplant	The impact of donor and recipient common clinical and genetic variation on estimated glomerular filtration rate in a European renal transplant population.	Estimated glomerular filtration rate after 1 year in renal transplantation (recipient effect)	Up to 5,935 European ancestry individuals	NA	4q34.1	AC096751.1	rs2555639-T	NR	4E-6	(adjusted for clinical variables)			Illumina [up to 3803121] (imputed)	N
1924	chr4	175526689	175526690	rs2332838	33539483	Li Z	2021-02-04	PLoS One	Bivariate genome-wide association study (GWAS) of body mass index and blood pressure phenotypes in northern Chinese twins.	Systolic blood pressure and diastolic blood pressure (bivariate analysis)	274 Chinese ancestry dizygotic twins	NA	4q34.1	LOC105377549	rs2332838-?	NR	6E-6				Illumina [7401356] (imputed)	N
1924	chr4	175556815	175556816	rs6856421	28425483	Qiu F	2017-04-20	Nat Commun	A genome-wide association study identifies six novel risk loci for primary biliary cholangitis.	Primary biliary cholangitis	1,122 Han Chinese ancestry cases, 4,036 Han Chinese ancestry controls	907 Han Chinese ancestry cases, 2,127 Han Chinese ancestry controls	4q34.1	GLRA3	rs6856421-A	0.257	2E-6		1.22	[1.11-1.30]	Illumina [776516]	N
1924	chr4	175565244	175565245	rs4235212	29367611	Gao B	2018-01-24	Sci Rep	Genome-wide association study of paclitaxel and carboplatin disposition in women with epithelial ovarian cancer.	Paclitaxel disposition in epithelial ovarian cancer	66 European ancestry cases, 14 Asian ancestry cases	NA	4q34.1	GLRA3	rs4235212-?	NR	6E-6		2.503	unit increase (EA, Australian cohort)	Illumina [610255]	N
1924	chr4	175622589	175622590	rs12646911	25963547	Wilson CL	2015-05-11	Cancer	Genetic and clinical factors associated with obesity among adult survivors of childhood cancer: A report from the St. Jude Lifetime Cohort.	Obesity in adult survivors of childhood cancer exposed to cranial radiation	365 obese individuals, 411 non-obese individuals	NA	4q34.1	GLRA3	rs12646911-A	0.78	1E-6		1.89	[1.45-2.44]	Affymetrix [NR] (imputed)	N
1924	chr4	175624714	175624715	rs12506042	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	4q34.1	HPGD	rs12506042-?	NR	8E-6	(alpha ketoglutarate)	0.24371046	[0.14-0.35] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1925	chr4	175640176	175640177	rs182520855	31530331	Thorp JG	2019-09-18	Psychol Med	Genetic heterogeneity in self-reported depressive symptoms identified through genetic analyses of the PHQ-9.	Depressive symptom (fatigue) (ordinal trait)	148,752 European ancestry individuals	NA	4q34.1	GLRA3	rs182520855-A	0.984	1E-8		0.071	[0.047-0.095] unit decrease	NR [9413637] (imputed)	N
1925	chr4	175642698	175642699	rs11725853	24595857	Sandholm N	2014-03-05	Diabetologia	Genome-wide association study of urinary albumin excretion rate in patients with type 1 diabetes.	Urinary albumin excretion rate in type 1 diabetes	1,925 European ancestry cases	3,750 European ancestry cases	4q34.1	GLRA3	rs11725853-A	0.15	8E-7		0.11	[0.07-0.16] unit increase	Illumina [2400000] (imputed)	N
1926	chr4	175828035	175828036	rs7697216	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Breast cancer	17,389 European ancestry cases, 240,341 European ancestry controls, 6,325 East Asian ancestry cases, 73,225 East Asian ancestry controls	NA	4q34.1		rs7697216-C	NR	1E-12		0.1033	[0.075-0.132] unit increase	Affymetrix, Illumina [25794640] (imputed)	N
1926	chr4	175828035	175828036	rs7697216	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	4q34.1	NR	rs7697216-C	0.8819	2E-26	(EA)	0.1039	[0.085-0.123] unit increase	Illumina [~ 11800000] (imputed)	N
1926	chr4	175846425	175846426	rs6828523	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	4q34.1		rs6828523-A	NR	5E-27		0.91	[0.9-0.93]	Affymetrix, Illumina [NR] (imputed)	N
1926	chr4	175846425	175846426	rs6828523	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	4q34.1	ADAM29	rs6828523-C	0.88	2E-25	(EA)	1.098901	[1.08-1.14] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
1926	chr4	175846425	175846426	rs6828523	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	46,785 European ancestry cases, 42,892 European ancestry controls	NA	4q34.1	NR	rs6828523-C	0.88	3E-12		1.1111112	[1.08-1.15]	Affymetrix, Illumina [~ 14000000] (imputed)	N
1926	chr4	175846425	175846426	rs6828523	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	15,748 European ancestry cases, 18,084 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls	4q34.1	NR	rs6828523-C	0.88	1E-15		1.1111112	[1.08-1.15]	Affymetrix, Illumina [~ 11600000] (imputed)	N
1926	chr4	175846425	175846426	rs6828523	23535729	Michailidou K	2013-04-01	Nat Genet	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	4q34.1	ADAM29	rs6828523-C	0.87	4E-16		1.11	[1.09-1.15]	Affymetrix, Illumina [~ 2600000] (imputed)	N
1926	chr4	175853514	175853515	rs7686118	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Breast cancer	17,881 European ancestry cases, 410,350 European ancestry controls	NA	4q34.1		rs7686118-A	NR	2E-7		1.0778185	NR	Affymetrix [7846216] (imputed)	N
1927	chr4	175932851	175932852	rs1966977	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	4q34.1	NR	rs1966977-C	0.1984	6E-7	(EA)	0.0422	[0.026-0.059] unit decrease	Illumina [~ 11800000] (imputed)	N
1927	chr4	175945080	175945081	rs146189703	28468790	Agopian AJ	2017-06-01	Circ Cardiovasc Genet	Genome-Wide Association Studies and Meta-Analyses for Congenital Heart Defects.	Conotruncal heart defects (maternal effects)	up to 838 European ancestry trios	NA	4q34.1	intergenic	rs146189703-?	NR	1E-6		1.0117565	[1.01-1.02]	Illumina [at least 4756722] (imputed)	N
1927	chr4	175945080	175945081	rs146189703	28468790	Agopian AJ	2017-06-01	Circ Cardiovasc Genet	Genome-Wide Association Studies and Meta-Analyses for Congenital Heart Defects.	Congenital heart disease (maternal effect)	1,119 European ancestry trios	NA	4q34.1	intergenic	rs146189703-?	NR	1E-6		1.0117474	[1.01-1.02]	Illumina [at least 4756722] (imputed)	N
1927	chr4	175949078	175949079	rs116074745	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	4q34.1	intergenic	rs116074745-?	NR	5E-6		0.295	[0.13-0.46] unit decrease	Illumina [at least 13000000] (imputed)	N
1927	chr4	175950595	175950596	rs76744071	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	4q34.1	ADAM29, GPM6A	rs76744071-C	0.01	6E-11	(EA)	0.8134	[0.58-1.05] unit increase	Illumina [~ 9000000] (imputed)	N
1927	chr4	175950595	175950596	rs76744071	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	4q34.1	ADAM29, GPM6A	rs76744071-C	0.01	3E-11		0.8192	[0.58-1.06] unit increase	Illumina [~ 9000000] (imputed)	N
1927	chr4	175960752	175960753	rs13106889	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-4 levels	8,124 Finnish ancestry individuals	NA	4q34.1	NR	rs13106889-T		2E-7		0.1161	[0.072-0.16] SD units increase	NR [10700000] (imputed)	N
1927	chr4	176008217	176008218	rs72698613	23962720	Speed D	2013-08-19	Hum Mol Genet	A genome-wide association study and biological pathway analysis of epilepsy prognosis in a prospective cohort of newly treated epilepsy.	Epilepsy (remission after treatment)	889 European and unknown ancestry epilepsy cases	NA	4q34.1	NR	rs72698613-A	0.92	4E-6		2.39	[NR]	Illumina [6923995] (imputed)	N
1928	chr4	176059276	176059277	rs183819925	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	4q34.1	ADAM29, GPM6A	rs183819925-G	0.01	4E-8	(EA)	0.5454	[0.35-0.74] unit increase	Illumina [~ 9000000] (imputed)	N
1928	chr4	176059276	176059277	rs183819925	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	4q34.1	ADAM29, GPM6A	rs183819925-G	0.01	3E-8		0.5509	[0.36-0.74] unit increase	Illumina [~ 9000000] (imputed)	N
1928	chr4	176070550	176070551	rs12640002	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Major depressive disorder x sex interaction	15,970 European ancestry cases, 24,984 European ancestry controls	NA	4q34.1	ADAM29, GPM6A	rs12640002-A	0.362	4E-6		0.1437	[0.083-0.205] unit decrease	NR [NR] (imputed)	N
1928	chr4	176153169	176153170	rs114204800	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 2 levels	252 European ancestry individuals	NA	4q34.1		rs114204800-G	NR	6E-6		2.9631	[1.71-4.22] unit decrease	Illumina [NR] (imputed)	N
1929	chr4	176205022	176205023	rs35262949	33742053	Wells HRR	2021-03-19	Sci Rep	Genome-wide association study suggests that variation at the RCOR1 locus is associated with tinnitus in UK Biobank.	Tinnitus (severest)	87,314 British ancestry individuals	NA	4q34.1	NR	rs35262949-T	NR	6E-7		0.0172836	[0.011-0.024] unit decrease	Affymetrix [9740198] (imputed)	N
1929	chr4	176247941	176247942	rs28600082	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Daytime sleepiness	386,548 European ancestry individuals	NA	4q34.1	NR	rs28600082-T	0.0009074	1E-8		2.44	[2.13-2.75]	Affymetrix, Illumina [10820725] (imputed)	N
1929	chr4	176270884	176270885	rs2333163	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	4q34.1	LOC391718	rs2333163-G	0.034	5E-6	(TBF-b1 )	0.03	[NR] pg/mL increase	Illumina [899892]	N
1932	chr4	176556576	176556577	rs79422343	32592749	Butler-Laporte G	2020-06-24	Clin Microbiol Infect	Elevated body-mass index is associated with an increased risk of infectious disease admissions and mortality: a mendelian randomization study.	Sepsis (28-day mortality)	210 European ancestry cases, 1,827 European ancestry controls	NA	4q34.2	GPM6A	rs79422343-T	0.99	1E-8		0.37	[0.24-0.5] unit decrease	NR [NR]	N
1932	chr4	176626271	176626272	rs12640626	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	4q34.2	GPM6A	rs12640626-A	0.4255	1E-9		0.01239576	[0.0084-0.0164] unit increase	Affymetrix [up to 18485882] (imputed)	N
1932	chr4	176626271	176626272	rs12640626	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	4q34.2	NR	rs12640626-A	0.5802	2E-8		0.012705603	NR unit increase	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
1932	chr4	176626271	176626272	rs12640626	25201988	Rietveld CA	2014-09-08	Proc Natl Acad Sci U S A	Common genetic variants associated with cognitive performance identified using the proxy-phenotype method.	Educational attainment	106,736 European ancestry individuals	NA	4q34.2	intergenic	rs12640626-A	0.57	8E-7		0.022	[NR] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1932	chr4	176626271	176626272	rs12640626	23722424	Rietveld CA	2013-05-30	Science	GWAS of 126,559 individuals identifies genetic variants associated with educational attainment.	Educational attainment	up to 101,069 European ancestry individuals	25,490 European ancestry individuals	4q34.2	GPM6A	rs12640626-A	0.58	7E-6	(College)	1.034	[NR]	Affymetrix, Illumina, Perlegen [up to 2309290] (imputed)	N
1932	chr4	176635011	176635012	rs13136968	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	4q34.2	GPM6A	rs13136968-?	NR	2E-8		0.01358445	[0.0089-0.0183] unit decrease	NR [7306098]	N
1932	chr4	176641466	176641467	rs2581761	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	4q34.2	Intergenic	rs2581761-A	0.4374	3E-9		0.0135	[0.009-0.018] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1932	chr4	176642437	176642438	rs1814701	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	4q34.2		rs1814701-T	0.4393	6E-18	(conditional-joint)	0.0122	[0.0095-0.0149] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1932	chr4	176647636	176647637	rs17598675	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	4q34.2		rs17598675-T	0.5132	1E-16		0.0116	[0.0089-0.0143] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1932	chr4	176648331	176648332	rs9284954	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	4q34.2	NR	rs9284954-C	0.444965493231047	5E-6	(IGP77)	0.1418	[0.081-0.203] unit decrease	Illumina [~ 2500000] (imputed)	N
1932	chr4	176662086	176662087	rs17599018	22365631	Greenwood TA	2012-02-22	Biol Psychiatry	Genome-wide association study of temperament in bipolar disorder reveals significant associations with three novel Loci.	Temperament (bipolar disorder)	1,263 European ancestry cases, 1,434 European ancestry controls	NA	4q34.2	GPM6A	rs17599018-?	NR	2E-6	(Dysthymic)	0.98	[NR] unit increase	Affymetrix [703012]	N
1932	chr4	176666932	176666933	rs4146675	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	4q34.2		rs4146675-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1933	chr4	176725219	176725220	rs7673823	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	4q34.2	NR	rs7673823-?	NR	5E-9		1.10263	[1.07-1.14]	Affymetrix, Illumina [12447948] (imputed)	N
1933	chr4	176728613	176728614	rs13142920	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	4q34.2	NR	rs13142920-?	NR	2E-10		1.0712258	[1.05-1.09]	Affymetrix, Illumina [12447948] (imputed)	N
1933	chr4	176728613	176728614	rs13142920	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls	NA	4q34.2	NR	rs13142920-?	NR	5E-9		1.0869565		Affymetrix, Illumina [9938587] (imputed)	N
1933	chr4	176731400	176731401	rs12498839	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	4q34.2	NR	rs12498839-A	NR	2E-6		1.11	[NR]	Illumina [7158791] (imputed)	N
1933	chr4	176735235	176735236	rs114201782	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Sensorimotor dexterity	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	4q34.2	GPM6A	rs114201782-T	NR	7E-7		0.8438861	[0.48-1.21] unit decrease	Illumina [> 6200000] (imputed)	N
1934	chr4	176839334	176839335	rs9686024	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (college completion)	280,007 European ancestry individuals	NA	4q34.2	NR	rs9686024-A	0.8316	2E-8		1.0453951	[NR]	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
1934	chr4	176840815	176840816	rs6818081	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	4q34.2	NR	rs6818081-T	NR	3E-8		0.01805	[0.012-0.024] unit increase	Affymetrix [10847151] (imputed)	N
1934	chr4	176842396	176842397	rs72704531	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	4q34.2		rs72704531-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1934	chr4	176851044	176851045	rs17611770	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	4q34.2	NR	rs17611770-A	NR	3E-8		5.566	z score decrease	Affymetrix [10847151] (imputed)	N
1934	chr4	176855220	176855221	rs62334820	29483656	Pardinas AF	2018-02-26	Nat Genet	Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.	Schizophrenia	40,675 European ancestry cases, 64,643 European ancestry controls	1,651 European ancestry cases, 4,111 cases, 142,717 European ancestry controls, 11,507 controls	4q34.2	GPM6A	rs62334820-?	NR	1E-11		1.0845987	[1.06-1.11]	Illumina [8000000] (imputed)	N
1934	chr4	176859025	176859026	rs7687921	20400778	Morrison AC	2010-04-17	Circ Cardiovasc Genet	Genomic variation associated with mortality among adults of European and African ancestry with heart failure: the cohorts for heart and aging research in genomic epidemiology consortium.	Mortality in heart failure	1,645 European ancestry cases, 881 European ancestry controls, 281 African ancestry cases, 185 African ancestry controls	NA	4q34.2	GPM6A	rs7687921-T	0.039	4E-6	(EA)	1.77	[0.95-3.28]	Affymetrix [up to 2366858] (imputed)	N
1934	chr4	176859757	176859758	rs4690421	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	4q34.2	Intergenic	rs4690421-T	0.2559	4E-10	(MTAG)	0.0118	[0.0081-0.0155] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1934	chr4	176859991	176859992	rs2333321	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	4q34.2	NR	rs2333321-?	NR	2E-10		1.07412	[1.05-1.1]	Affymetrix, Illumina [12447948] (imputed)	N
1934	chr4	176861300	176861301	rs1106568	31268507	Periyasamy S	2019-07-03	JAMA Psychiatry	Association of Schizophrenia Risk With Disordered Niacin Metabolism in an Indian Genome-wide Association Study.	Schizophrenia	816 Indian ancestry cases, 900 Indian ancestry controls, 505 Indian ancestry cases and 871 Indian ancestry controls from 405 families, up to 36,989 European and unknown ancestry cases, up to 113,075 European and unknown ancestry controls	NA	4q34.2	NR	rs1106568-?	NR	1E-8				Illumina [up to 5582932] (imputed)	N
1934	chr4	176861300	176861301	rs1106568	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	4q34.2	NR	rs1106568-G	NR	7E-9		1.0752687	[NR]	Illumina [7158791] (imputed)	N
1934	chr4	176861300	176861301	rs1106568	25056061	Ripke S	2014-07-22	Nature	Biological insights from 108 schizophrenia-associated genetic loci.	Schizophrenia	32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	1,513 European ancestry cases, 66,236 European ancestry controls	4q34.2	GPM6A	rs1106568-G	0.239	9E-9		1.0706638	[1.05-1.1]	Affymetrix, Illumina [9005918] (imputed)	N
1934	chr4	176866458	176866459	rs6846161	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	4q34.2	GPM6A	rs6846161-A	NR	4E-8	(EA)	1.071	[1.05-1.1]	Illumina [6627481] (imputed)	N
1934	chr4	176866458	176866459	rs6846161	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	4q34.2	GPM6A	rs6846161-A	NR	4E-8		1.062	[1.04-1.08]	Illumina [6627481] (imputed)	N
1934	chr4	176866458	176866459	rs6846161	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	4q34.2	GPM6A	rs6846161-A	NR	1E-9		1.067	[1.05-1.09]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1934	chr4	176875794	176875795	rs62340589	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	4q34.2	NR	rs62340589-C	0.201	6E-10		0.00838704	[0.0057-0.011] unit increase	NR [9732723] (imputed)	N
1934	chr4	176875794	176875795	rs62340589	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	4q34.2	NR	rs62340589-C	0.201	4E-8		0.017413368	[0.011-0.024] unit increase	NR [~ 10000000] (imputed)	N
1934	chr4	176912382	176912383	rs774822130	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid respiratory support vs population)	495 European ancestry cases, 680,440 European ancestry controls, 102 Hispanic or Latin American cases, 94,330 Hispanic or Latin American controls, 39 Black or African American cases, 22,410 Black or African American controls	NA	4q34.2		rs774822130-?	NR	4E-6		0.9440598	[0.54-1.34] unit decrease	Illumina [9842460] (imputed)	N
1934	chr4	176922277	176922278	rs6553899	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	4q34.2	Intergenic	rs6553899-A	0.2908	2E-8	(MTAG)	0.0142	[0.0093-0.0191] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1934	chr4	176940334	176940335	rs62340636	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	4q34.2		rs62340636-T	0.6254	1E-12		0.0103	[0.0076-0.013] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1934	chr4	176940334	176940335	rs62340636	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	4q34.2	Intergenic	rs62340636-T	0.6254	4E-14	(MTAG)	0.0102	[0.0075-0.0129] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1935	chr4	176952520	176952521	rs13132934	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	4q34.2	NR	rs13132934-?	NR	9E-7		4.914	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1935	chr4	176956539	176956540	rs61083878	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Verbal-numerical reasoning	171,304 British ancestry individuals	NA	4q34.2		rs61083878-?	NR	3E-8				NR [7857346] (imputed)	N
1935	chr4	176966283	176966284	rs4690423	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	4q34.2		rs4690423-A	0.3675	1E-13	(conditional-joint)	0.0109	[0.008-0.0138] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1935	chr4	176972307	176972308	rs202004530	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Hepatitis B	1,425 European ancestry cases, 218,180 European ancestry controls	NA	4q34.2	NR	rs202004530-?	NR	3E-6		0.7472	[0.46-1.03] unit decrease	Illumina [at least 560000] (imputed)	N
1935	chr4	176976477	176976478	rs150619981	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	4q34.2	NR	rs150619981-A	NR	2E-6	(male)	0.4503	[0.27-0.63] unit decrease	Illumina [11133794] (imputed)	N
1935	chr4	177076246	177076247	rs10012282	29520036	Stein MB	2018-03-08	Mol Psychiatry	Genome-wide analysis of insomnia disorder.	Insomnia	2,297 European American cases, 334 African American cases, 606 Latino American cases, 9,176 European American controls, 2,345 African American controls, 2,893 Latino American controls	NA	4q34.2	WDR17	rs10012282-C	NR	7E-7	(Hispanic)	2.857143		Illumina [at least 360704] (imputed)	N
1936	chr4	177130983	177130984	rs73007116	32180562	Kulyte A	2020-01-25	Mol Metab	Genome-wide association study of adipocyte lipolysis in the GENetics of adipocyte lipolysis (GENiAL) cohort.	Stimulated adipocyte lipolysis	874 European ancestry individuals	NA	4q34.2	NR	rs73007116-T	0.913842	2E-6		0.118	[0.069-0.167] unit decrease	NR [9260588] (imputed)	N
1936	chr4	177169429	177169430	rs2624881	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	4q34.2	Intergenic	rs2624881-T	0.9055	2E-8	(MTAG)	0.0126	[0.0081-0.0171] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1937	chr4	177218252	177218253	rs183073101	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	4q34.2	NR	rs183073101-?	NR	6E-6	(AA)	0.8703	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1937	chr4	177242958	177242959	rs4690686	27797806	Muller SH	2016-10-20	Brain	Genome-wide association study in essential tremor identifies three new loci.	Essential tremor	1,778 European ancestry cases, 5,376 European ancestry controls	1,029 European ancestry cases, 1,065 European ancestry controls	4q34.2	NR	rs4690686-T	0.3424	3E-7		1.19	[1.11-1.27]	Affymetrix [at least 416462] (imputed)	N
1937	chr4	177286363	177286364	rs7671099	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	4q34.2	ASB5	rs7671099-?	NR	5E-6	(TAG 58:10)	0.33919224	[0.19-0.49] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1937	chr4	177291822	177291823	rs6828215	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric bone mineral density (femoral neck)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	4q34.2	NR	rs6828215-C	0.473	2E-6		0.179	[0.11-0.25] unit increase	Illumina [~ 6600000] (imputed)	N
1938	chr4	177346313	177346314	rs6840938	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	4q34.2		rs6840938-A	NR	5E-19		0.0199	[0.016-0.024] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
1938	chr4	177346313	177346314	rs6840938	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	4q34.2		rs6840938-A	NR	7E-18		0.019	[0.015-0.023] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
1938	chr4	177346313	177346314	rs6840938	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	4q34.2		rs6840938-A	NR	2E-8		0.0115	[0.0076-0.0154] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
1938	chr4	177346314	177346315	rs6842422	31926635	Coleman JRI	2019-11-01	Biol Psychiatry	The Genetics of the Mood Disorder Spectrum: Genome-wide Association Analyses of More Than 185,000 Cases and 439,000 Controls.	Bipolar disorder or major depressive disorder	164,933 European ancestry major depressive disorder cases, 20,352 European ancestry bipolar disorder cases, 439,741 European ancestry controls	NA	4q34.2	NR	rs6842422-?	NR	5E-7				NR [NR] (imputed)	N
1938	chr4	177358797	177358798	rs1454157	28394258	Wild PS	2017-04-10	J Clin Invest	Large-scale genome-wide analysis identifies genetic variants associated with cardiac structure and function.	Left ventricular mass	30,201 European ancestry individuals	14,002 European ancestry individuals	4q34.2	SPCS3	rs1454157-C	0.73	1E-7		1.384	[0.87-1.89] g increase	Affymetrix, Illumina [at least 283291] (imputed)	N
1938	chr4	177365251	177365252	rs6851508	28394258	Wild PS	2017-04-10	J Clin Invest	Large-scale genome-wide analysis identifies genetic variants associated with cardiac structure and function.	Left ventricle wall thickness	30,201 European ancestry individuals	NA	4q34.2	NR	rs6851508-T	0.6458	1E-7		0.0106	[0.0067-0.0145] unit increase	Affymetrix, Illumina [at least 283291] (imputed)	N
1938	chr4	177407174	177407175	rs1449727	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	120,539 East Asian ancestry individuals	NA	4q34.2		rs1449727-T	0.17548	5E-9		0.0287402	[0.019-0.038] unit decrease	Illumina [13474682] (imputed)	N
1938	chr4	177407174	177407175	rs1449727	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum albumin levels	102,223 Japanese ancestry individuals	NA	4q34.2	SPCS3, VEGFC	rs1449727-?	NR	6E-9		0.03369	[0.022-0.045] unit decrease	Illumina [6108953] (imputed)	N
1938	chr4	177424284	177424285	rs2333469	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	4q34.2	SPCS3	rs2333469-A	0.628461	7E-9	(-18 ms)	0.0327871	[0.021-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
1938	chr4	177424284	177424285	rs2333469	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	4q34.2	SPCS3	rs2333469-A	0.628461	5E-9	(-20 ms)	0.0326789	[0.021-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
1938	chr4	177424284	177424285	rs2333469	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	4q34.2	SPCS3	rs2333469-A	0.628461	4E-8	(-14 ms)	0.0317289	[0.02-0.043] unit decrease	Affymetrix [10000000] (imputed)	N
1938	chr4	177424284	177424285	rs2333469	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	4q34.2	SPCS3	rs2333469-A	0.628461	2E-8	(-16 ms)	0.0321808	[0.021-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
1938	chr4	177430071	177430072	rs395980	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	4q34.2	intergenic	rs395980-T	0.7365	1E-17		0.0184	[0.014-0.023] unit increase	Affymetrix [18391927] (imputed)	N
1938	chr4	177430408	177430409	rs437376	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	4q34.2	VEGFC	rs437376-T	0.716	6E-9		0.082	[0.055-0.109] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1938	chr4	177430643	177430644	rs447324	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	133,321 East Asian ancestry individuals	NA	4q34.2		rs447324-G	0.608211	1E-9		0.0232337	[0.016-0.031] unit increase	Illumina [13477433] (imputed)	N
1938	chr4	177430643	177430644	rs447324	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Intraocular pressure	133,492 European ancestry individuals	NA	4q34.2	VEGFC	rs447324-A	0.72	6E-8				Affymetrix, Illumina [8002429] (imputed)	N
1938	chr4	177430643	177430644	rs447324	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum total protein level	113,509 Japanese ancestry individuals	NA	4q34.2	SPCS3, VEGFC	rs447324-?	NR	4E-9		0.02528	[0.017-0.034] unit increase novel	Illumina [6108953] (imputed)	N
1938	chr4	177433596	177433597	rs921312	26528553	Davenport ER	2015-11-03	PLoS One	Genome-Wide Association Studies of the Human Gut Microbiota.	Gut microbiome composition (winter)	93 Hutterite individuals	NA	4q34.2	NR	rs921312-?		1E-6	(genus_Lactobacillus)	0.674456	[0.43-0.92] unit decrease	Affymetrix [211319]	N
1938	chr4	177433897	177433898	rs10017639	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Non-Hodgkin's lymphoma	2,400 European ancestry cases, 410,350 European ancestry controls	NA	4q34.2		rs10017639-T	0.098045	7E-7		1.2567551	NR	Affymetrix [7846216] (imputed)	N
1938	chr4	177468978	177468979	rs12511856	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 11, projection of the nose)	2,187 European ancestry individuals	NA	4q34.2	NR	rs12511856-C	0.2801	5E-6		0.1543	[0.088-0.22] unit decrease	Illumina [10677593] (imputed)	N
1938	chr4	177471058	177471059	rs17688188	30823506	Hong EP	2019-02-25	J Clin Med	Genomic Variations in Susceptibility to Intracranial Aneurysm in the Korean Population.	Intracranial aneurysm	250 Korean ancestry cases, 296 Korean ancestry controls	NA	4q34.2	SPCS3	rs17688188-G	0.6699999999999999	6E-13		3.7037036	[2.63-5.26]	Affymetrix [508192]	N
1939	chr4	177528598	177528599	rs7677598	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	4q34.3	NR	rs7677598-?	NR	2E-12				Affymetrix [NR]	N
1939	chr4	177530811	177530812	rs7660760	28394258	Wild PS	2017-04-10	J Clin Invest	Large-scale genome-wide analysis identifies genetic variants associated with cardiac structure and function.	Left ventricle wall thickness	30,201 European ancestry individuals	NA	4q34.3	NR	rs7660760-T	0.5476	4E-7		0.0094	[0.0057-0.0131] unit decrease	Affymetrix, Illumina [at least 283291] (imputed)	N
1939	chr4	177542972	177542973	rs13111989	22174851	Lingappa JR	2011-12-12	PLoS One	Genomewide association study for determinants of HIV-1 acquisition and viral set point in HIV-1 serodiscordant couples with quantified virus exposure.	HIV-1 viral setpoint	496 African ancestry cases	NA	4q34.3	VEGFC	rs13111989-?	NR	2E-7				Illumina [990115]	N
1939	chr4	177574140	177574141	rs113732232	30898391	Lawrenson K	2019-03-19	Gynecol Oncol	Genome-wide association studies identify susceptibility loci for epithelial ovarian cancer in east Asian women.	Epithelial ovarian cancer	3,238 East Asian ancestry cases, 4,083 East Asian ancestry controls	NA	4q34.3		rs113732232-?	NR	7E-6	(serous_hg)	1.63		Illumina [11595112] (imputed)	N
1939	chr4	177587236	177587237	rs12509218	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Chin dimples	58,032 European ancestry cases, 13,457 European ancestry controls	NA	4q34.3	SPCS3, VEGFC	rs12509218-?	NR	3E-15		1.1933174	[1.14-1.25]	Illumina [13537761] (imputed)	N
1940	chr4	177609608	177609609	rs2333496	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	4q34.3	NR	rs2333496-T	0.69	8E-11		0.012	[0.0083-0.0157] unit increase	Affymetrix [2446094] (imputed)	N
1940	chr4	177609608	177609609	rs2333496	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	4q34.3	NR	rs2333496-T	0.69	5E-8				Affymetrix [2446094] (imputed)	N
1940	chr4	177614116	177614117	rs371162363	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	4q34.3	NR	rs371162363-G	0.904135	6E-15		0.0392154	[0.029-0.049] unit increase	Affymetrix [16580851] (imputed)	N
1940	chr4	177637599	177637600	rs12500029	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	4q34.3		rs12500029-A	NR	2E-8		0.0157	[0.01-0.021] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
1940	chr4	177640422	177640423	rs1485768	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q34.3	NR	rs1485768-A	0.878882	3E-10				Affymetrix, Illumina [24558453] (imputed)	N
1940	chr4	177641051	177641052	rs62328297	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	4q34.3		rs62328297-?	NR	3E-12				NR [~ 8900000] (imputed)	N
1940	chr4	177645548	177645549	rs6820170	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	4q34.3		rs6820170-T	NR	4E-8		0.0148	[0.0095-0.0201] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
1940	chr4	177650865	177650866	rs41278571	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein VEGFC	5,361 Icelandic ancestry individuals	NA	4q34.3		rs41278571-T	0.02024	5E-240		2.00092	[1.88-2.12] unit increase	Illumina [7506463] (imputed)	N
1940	chr4	177650865	177650866	rs41278571	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	4q34.3	VEGFC	rs41278571-T	0.01	1E-46	(Vascular endothelial growth factor C, VEGFC.3132.1.1)	1.74	[1.5-1.98] unit increase	Affymetrix [10572788] (imputed)	N
1940	chr4	177695964	177695964	rs771258439	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	4q34.3	NR	rs771258439-A	0.9019094	5E-8		0.0118455	[0.0076-0.0161] unit increase	Affymetrix [16578495] (imputed)	N
1940	chr4	177705861	177705862	rs4571283	32769997	Zhou W	2020-08-07	Nat Commun	GWAS of thyroid stimulating hormone highlights pleiotropic effects and inverse association with thyroid cancer.	Thyroid stimulating hormone levels	119,715 European ancestry individuals	NA	4q34.3	VEGFC	rs4571283-A	0.874913976281531	3E-9		0.0451	[0.03-0.06] SD increase	Illumina [22400000] (imputed)	N
1940	chr4	177720358	177720359	rs11131764	33421400	Galata G	2021-01-04	Am J Hum Genet	Genome-wide association study identifies novel susceptibility loci for KIT D816V positive mastocytosis.	Mastocytosis (KIT D816V positive)	414 European ancestry cases, 9,504 European ancestry controls	621 European ancestry cases, 8,456 European ancestry controls	4q34.3	VEGFC, NEIL3	rs11131764-C	NR	2E-6		1.6503		Illumina [592007] (imputed)	N
1941	chr4	177755172	177755173	rs112782083	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q34.3	VEGFC	rs112782083-G	0.98109375	1E-117	(VEGFC, 3132_1_1)	2.0185907	[1.85-2.18] unit decrease	Illumina [> 1000000] (imputed)	N
1941	chr4	177775582	177775583	rs72715833	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	4q34.3		rs72715833-A	0.18	4E-9		5.89	z score increase	Affymetrix [9061022] (imputed)	N
1941	chr4	177785567	177785568	rs6552198	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	4q34.3	AC092673.1	rs6552198-A	0.6378	7E-18		0.0169	[0.013-0.021] unit decrease	Affymetrix [18391927] (imputed)	N
1941	chr4	177821986	177821987	rs114108584	29495422	Xu H	2018-02-26	J Pers Med	A Genome-Wide Association Study of Idiopathic Dilated Cardiomyopathy in African Americans.	Idiopathic dilated cardiomyopathy	662 African American cases, 1,138 African American controls	NA	4q34.3	VEGFC, NEIL3	rs114108584-T	0.055	9E-6		1.03	[1.06-35.71]	Affymetrix [up to 27494467] (imputed)	N
1942	chr4	177895839	177895840	rs12172985	28394258	Wild PS	2017-04-10	J Clin Invest	Large-scale genome-wide analysis identifies genetic variants associated with cardiac structure and function.	Left ventricle wall thickness	30,201 European ancestry individuals	NA	4q34.3	NR	rs12172985-T	0.9842	3E-6		0.1034	[0.06-0.147] unit increase	Affymetrix, Illumina [at least 283291] (imputed)	N
1942	chr4	177952643	177952644	rs116170800	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	4q34.3	Intergenic	rs116170800-T	NR	7E-6	(men)	0.517791	[0.29-0.74] unit increase	Illumina [13520550] (imputed)	N
1942	chr4	177959510	177959511	rs10023962	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	4q34.3		rs10023962-T	0.183699	2E-9		0.0311158	[0.021-0.041] unit increase	NR [11722792] (imputed)	N
1942	chr4	177959510	177959511	rs10023962	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	4q34.3	RP11-487E13.1	rs10023962-T	0.183248	5E-12		0.0175664	[0.013-0.023] unit decrease	Affymetrix [NR] (imputed)	N
1942	chr4	177979568	177979569	rs11932468	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	4q34.3		rs11932468-A	NR	3E-10		0.0135	[0.0094-0.0176] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1945	chr4	178318190	178318191	rs1395479	23698163	Gong J	2013-05-21	Nutrients	Genome-wide association study of serum selenium concentrations.	Serum selenium levels	582 European ancestry individuals	621 European ancestry individuals	4q34.3	AGA	rs1395479-A	0.27	3E-7		0.043	[0.027-0.059] mg/dL increase	Illumina [2474333]	N
1945	chr4	178318190	178318191	rs1395479	17903306	Newton-Cheh C	2007-09-19	BMC Med Genet	Genome-wide association study of electrocardiographic and heart rate variability traits: the Framingham Heart Study.	Heart rate variability traits	747 European ancestry individuals from 307 families	NA	4q34.3	NEIL3	rs1395479-?	NR	7E-6	(LF/HF)			Affymetrix [70897]	N
1945	chr4	178345421	178345422	rs79862939	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,963 Sub-Saharan African ancestry females	NA	4q34.3		rs79862939-G	0.968301	3E-6		0.0366559	[0.021-0.052] unit decrease	Illumina [13900000] (imputed)	N
1945	chr4	178348923	178348924	rs56104552	33831438	Williams JE	2021-04-05	Genomics	Key genetic variants associated with variation of milk oligosaccharides from diverse human populations.	Human milk oligosaccharide concentration (lacto-N-fucopentaose III)	395 European, Sub-Saharan African, Hispanic or unknown ancestry individuals	NA	4q34.3		rs56104552-?	NR	1E-9				Illumina [1128286]	N
1945	chr4	178361050	178361051	rs4690522	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	4q34.3	NEIL3	rs4690522-?	NR	1E-10	(asparagine)	0.25030407	[0.17-0.33] unit increase	Affymetrix [at least 2500000] (imputed)	N
1945	chr4	178363377	178363378	rs11131799	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	4q34.3	AGA	rs11131799-G	0.376351	4E-13	(N-acetylglucosaminylasparagine)	0.168	[0.12-0.21] unit increase	Illumina [13039987] (imputed)	N
1946	chr4	178413297	178413298	rs57068542	31586183	Niazi Y	2019-10-04	Mutagenesis	Distinct pathways associated with chromosomal aberration frequency in a cohort exposed to genotoxic compounds compared to general population.	Chromosomal aberration frequency (chromatid type)	607 European and unknown ancestry genotoxic compound-exposed individuals, 866 European and unknown ancestry unexposed individuals	NA	4q34.3	AGA	rs57068542-?	NR	4E-7		0.09	[NR] unit decrease	Illumina [> 2600000] (imputed)	N
1946	chr4	178418146	178418147	rs117413665	28662289	Lin YY	2017-06-29	Cancer	Genome-wide association analysis identifies a GLUL haplotype for familial hepatitis B virus-related hepatocellular carcinoma.	Familial hepatitis B virus-related hepatocellular carcinoma	139 East Asian ancestry cases, 139 East Asian ancestry controls	NA	4q34.3	AGA	rs117413665-C	0.8406	6E-6		4.17	[2.17-8.33]	Affymetrix [641398]	N
1946	chr4	178449559	178449560	rs185609610	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q34.3	AK094945	rs185609610-G	0.999	5E-6	(AA)	0.331	unit increase	Illumina [NR] (imputed)	N
1946	chr4	178470495	178470496	rs4414903	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-18 levels	3,636 Finnish ancestry individuals	NA	4q34.3	NR	rs4414903-G		3E-6		0.1161	[0.067-0.165] SD units increase	NR [10700000] (imputed)	N
1946	chr4	178470897	178470898	rs4047771	30818990	Yu D	2019-03-01	Am J Psychiatry	Interrogating the Genetic Determinants of Tourette's Syndrome and Other Tic Disorders Through Genome-Wide Association Studies.	Tourette syndrome	4,271 European ancestry cases, 548 European ancestry cases from 207 families, 9,488 European ancestry controls	706 Icelandic ancestry cases, 6,068 Icelandic ancestry controls	4q34.3	NR	rs4047771-A	0.6764	4E-7		1.154076		Illumina [8265319] (imputed)	N
1946	chr4	178477451	178477452	rs1920975	25644384	Davies G	2015-02-03	Mol Psychiatry	Genetic contributions to variation in general cognitive function: a meta-analysis of genome-wide association studies in the CHARGE consortium (N=53949).	Cognitive function	51,719 European ancestry individuals, 1,473 Erasmus Rucphen (founder/genetic isolate) individuals, 327 Korculan (founder/genetic isolate) individuals, 430 Orcadian (founder/genetic isolate) individuals	NA	4q34.3	intergenic	rs1920975-?	NR	4E-6		0.0254	[0.015-0.036] unit decrease	Affymetrix, Illumina [2478500] (imputed)	N
1947	chr4	178528813	178528814	rs62344853	31447353	Maciukiewicz M	2019-08-22	Schizophr Res	Genome-wide association study on antipsychotic-induced weight gain in Europeans and African-Americans.	Antipsychotic drug-induced weight gain in schizophrenia	144 European ancestry individuals, 57 African American individuals	NA	4q34.3	RP11-130F10.1	rs62344853-?		4E-6	(EA)	0.397	unit decrease	Illumina [1819374] (imputed)	N
1947	chr4	178539506	178539507	rs4690538	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	4q34.3	Intergenic	rs4690538-T	0.6548	3E-8	(MTAG)	0.0077	[0.005-0.0104] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1947	chr4	178540162	178540163	rs72709560	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	4q34.3		rs72709560-A	0.6865	2E-8		0.0085	[0.0056-0.0114] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1947	chr4	178593267	178593268	rs13149928	34330890	Ip HF	2021-07-30	Transl Psychiatry	Genetic association study of childhood aggression across raters, instruments, and age.	Childhood aggressive behavior	87,485 European ancestry individuals	NA	4q34.3		rs13149928-C	0.748208682	4E-6		0.016120426	[0.0093-0.023] unit decrease	Affymetrix, Illumina [up to 7284995] (imputed)	N
1948	chr4	178681211	178681212	rs10222887	33232274	Mohammadnejad A	2020-11-24	Aging (Albany NY)	Generalized correlation coefficient for genome-wide association analysis of cognitive ability in twins.	Cognitive function (mixed linear model)	900 Danish ancestry dizygotic twins, 272 Danish ancestry monozygotic twins	NA	4q34.3	NR	rs10222887-?	NR	1E-5		1.6841	[0.94-2.43] unit increase	Illumina [5779266] (imputed)	N
1948	chr4	178681211	178681212	rs10222887	33232274	Mohammadnejad A	2020-11-24	Aging (Albany NY)	Generalized correlation coefficient for genome-wide association analysis of cognitive ability in twins.	Cognitive function (kinship model)	900 Danish ancestry dizygotic twins, 272 Danish ancestry monozygotic twins	NA	4q34.3	NR	rs10222887-?	NR	9E-6		1.6841	[0.94-2.43] unit increase	Illumina [5779266] (imputed)	N
1948	chr4	178697483	178697484	rs62342460	35131881	Testori A	2022-02-07	Cancer Epidemiol Biomarkers Prev	Genetic analysis in African American children supports ancestry specific neuroblastoma susceptibility.	Neuroblastoma	629 African American cases, 2,990 African American controls	NA	4q34.3		rs62342460-G	NR	6E-6		0.9012	unit increase	Illumina [8524982] (imputed)	N
1948	chr4	178726959	178726960	rs72715653	28642124	Hensman Moss DJ	2017-06-20	Lancet Neurol	Identification of genetic variants associated with Huntington's disease progression: a genome-wide association study.	Huntington's disease progression	1,989 European and unknown ancestry mutation carriers	NA	4q34.3	LINC01098, LINC01099	rs72715653-?	NR	5E-6				Illumina [9650000] (imputed)	N
1948	chr4	178740647	178740648	rs4997950	26993346	Schott JM	2016-03-15	Alzheimers Dement	Genetic risk factors for the posterior cortical atrophy variant of Alzheimer's disease.	Posterior cortical atrophy and Alzheimer's disease	293 cases, 10,547 healthy controls	NA	4q34.3	Intergenic	rs4997950-?	NR	7E-6		1.6716651	[NR]	Illumina [~ 5900000] (imputed)	N
1949	chr4	178804235	178804236	rs17753381	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	4q34.3	AGA	rs17753381-?	NR	8E-6	(TAG 46:0)	0.79381657	[0.44-1.14] unit increase	Affymetrix [at least 2500000] (imputed)	N
1950	chr4	178972960	178972961	rs573716401	28604731	Hammerschlag AR	2017-06-12	Nat Genet	Genome-wide association analysis of insomnia complaints identifies risk genes and genetic overlap with psychiatric and metabolic traits.	Daytime sleepiness	112,717 European ancestry cases and controls	NA	4q34.3	NR	rs573716401-C	0.0013	2E-8		0.42	[0.27-0.57] unit increase	Affymetrix [at least 12428592] (imputed)	N
1950	chr4	179016479	179016480	rs71615297	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	4q34.3	RNU1-45P	rs71615297-?	NR	2E-8		0.011505666	[0.0075-0.0155] unit decrease	NR [7306098]	N
1951	chr4	179070444	179070445	rs3106836	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	4q34.3	Intergenic	rs3106836-A	0.3937	2E-8	(MTAG)	0.0075	[0.005-0.01] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1951	chr4	179108480	179108481	rs1563700	33109212	Chang H	2020-10-28	BMC Med	Genetic architecture of cardiometabolic risks in people living with HIV.	HDL cholesterol levels in HIV infection	3,095 European ancestry individuals, 3,189 African American individuals	NA	4q34.3	LINC01689, LINC01684	rs1563700-?		8E-6	(African American)	0.1396587	[0.079-0.201] unit decrease	Illumina [13620258] (imputed)	N
1952	chr4	179286720	179286721	rs7666286	27723758	Bronson PG	2016-10-10	Nat Genet	Common variants at PVT1, ATG13-AMBRA1, AHI1 and CLEC16A are associated with selective IgA deficiency.	Selective IgA deficiency	1,635 European ancestry cases, 4,852 European ancestry controls	NA	4q34.3	LINC01098	rs7666286-A		3E-6		1.8	[NR]	Illumina [up to 9464381] (imputed)	N
1953	chr4	179329163	179329164	rs115101230	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	4q34.3	NR	rs115101230-C	NR	4E-7	(GEE model)	1.066	[0.65-1.48] unit decrease	NR [NR] (imputed)	N
1953	chr4	179371663	179371664	rs2715408	32887874	Saw J	2020-09-04	Nat Commun	Chromosome 1q21.2 and additional loci influence risk of spontaneous coronary artery dissection and myocardial infarction.	Spontaneous coronary artery dissection	up to 243 European ancestry cases, up to 23 East Asian ancestry cases, up to 4,816 European ancestry controls, up to 447 East Asian ancestry controls	up to 149 European ancestry cases, up to 14 East Asian ancestry cases, up to 2,935 European ancestry controls, up to 272 East Asian ancestry controls	4q34.3	LOC285501	rs2715408-?	NA	8E-6		0.329	[0.18-0.47] unit decrease	Illumina [6690240] (imputed)	N
1953	chr4	179386944	179386945	rs1903542	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Coronary artery disease in hypertension	816 Korean ancestry cases, 15,488 Korean ancestry controls	NA	4q34.3		rs1903542-G	0.225	3E-6		1.313	[1.172-1.47099999999999]	Affymetrix [7975321] (imputed)	N
1953	chr4	179401432	179401433	rs2702449	24009623	Jiang J	2013-08-30	Front Genet	Genome-wide association study for biomarker identification of Rapamycin and Everolimus using a lymphoblastoid cell line system.	Response to mTOR inhibitor (everolimus)	87 European ancestry individuals, 91 African American individuals, 94 Han Chinese ancestry individuals	NA	4q34.3	AGA	rs2702449-?	NR	7E-6		0.28	[NR] unit increase	Affymetrix, Illumina [1348798]	N
1954	chr4	179447732	179447733	rs2715502	26718567	Williams SR	2015-12-30	Neurology	Shared genetic susceptibility of vascular-related biomarkers with ischemic and recurrent stroke.	Thrombomodulin levels in ischemic stroke	up to 1,725 European ancestry cases, up to 258 African ancestry cases, up to 117 cases	NA	4q34.3	NR	rs2715502-?	NR	2E-6				Illumina [7500450] (imputed)	N
1954	chr4	179514891	179514892	rs2715521	34838041	Naderi E	2021-11-27	J Transl Med	A two-stage genome-wide association study of radiation-induced acute toxicity in head and neck cancer.	radiation-induced toxicity (patient-rated acute sticky saliva)	799 Dutch ancestry individuals	214 Dutch ancestry individuals	4q34.3		rs2715521-G	NR	6E-6		0.1936	[0.11-0.28] increase	Illumina [6334277] (imputed)	N
1954	chr4	179563814	179563815	rs56196471	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Pursuit maintenance gain in psychotic disorders	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases	NA	4q34.3	LINC01098	rs56196471-?	NR	9E-8	(African)			Illumina [4404269] (imputed)	N
1954	chr4	179563814	179563815	rs56196471	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Pursuit maintenance gain	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	4q34.3	LINC01098	rs56196471-A	0.01242	4E-7	(African)			Illumina [4404269] (imputed)	N
1955	chr4	179647722	179647723	rs187707293	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hypothyroidism	30,155 European ancestry cases, 379,986 European ancestry controls, 1,114 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	4q34.3		rs187707293-A	NR	4E-8		0.2419	[0.16-0.33] unit increase	Affymetrix, Illumina [25801083] (imputed)	N
1955	chr4	179668168	179668169	rs12650624	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Perceived unattractiveness to mosquitoes	16,576 European ancestry individuals	NA	4q34.3	intergenic	rs12650624-T	NR	5E-6		0.389243	[0.22-0.56] unit decrease	Illumina [7433384] (imputed)	N
1955	chr4	179676625	179676626	rs17066724	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Supramarginal gyrus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	4q34.3	NR	rs17066724-?		3E-6				Illumina [4322238] (imputed)	N
1957	chr4	179932860	179932861	rs13151036	27529621	Otowa T	2016-08-16	PLoS One	The First Pilot Genome-Wide Gene-Environment Study of Depression in the Japanese Population.	Depressive symptoms (stressful life events interaction)	320 Japanese ancestry individuals	439 Japanese ancestry individuals	4q34.3	Intergenic	rs13151036-C	0.398	3E-6		0.045	[0.027-0.063] unit decrease	Affymetrix [534848]	N
1958	chr4	179967596	179967597	rs56755606	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	4q34.3	NR	rs56755606-A	NR	1E-7	(GEE model)	1.1021	[0.7-1.51] unit decrease	NR [NR] (imputed)	N
1958	chr4	180041175	180041176	rs151117102	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Chickenpox	107,769 European ancestry cases, 15,982 European ancestry controls	NA	4q34.3	NR	rs151117102-?	NR	8E-6		0.3131	[0.18-0.45] unit decrease	Illumina [at least 560000] (imputed)	N
1958	chr4	180048361	180048362	rs17067123	19684573	Ge D	2009-08-16	Nature	Genetic variation in IL28B predicts hepatitis C treatment-induced viral clearance.	Response to hepatitis C treatment	871 European ancestry cases, 191 African American cases, 75 Hispanic cases	NA	4q34.3	intergenic	rs17067123-?	NR	8E-6	(combined)			Illumina [565759]	N
1958	chr4	180053986	180053987	rs73866485	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q34.3	NR	rs73866485-T	0.01568	2E-8	(HSPA6)	0.02623	NR unit increase	Illumina [1671387] (imputed)	N
1959	chr4	180138648	180138649	rs78666213	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Stem cell factor levels	8,290 Finnish ancestry individuals	NA	4q34.3	NR	rs78666213-G		3E-6		0.2744	[0.16-0.39] SD units increase	NR [10700000] (imputed)	N
1959	chr4	180168023	180168024	rs1037702	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	4q34.3	NR	rs1037702-?	NR	6E-12				Affymetrix [~ 8270000] (imputed)	N
1959	chr4	180168023	180168024	rs1037702	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	4q34.3		rs1037702-?	NR	6E-12				NR [~ 8900000] (imputed)	N
1959	chr4	180178377	180178378	rs11131920	32227373	Osazuwa-Peters OL	2020-03-29	Genet Epidemiol	Identifying blood pressure loci whose effects are modulated by multiple lifestyle exposures.	Diastolic blood pressure x dichotomous lifestyle risk score interaction (2df test)	1,924 European ancestry unexposed individuals, 4,330 European ancestry exposed individuals	NA	4q34.3	intergenic	rs11131920-G	0.01	4E-13				NR [2407627] (imputed)	N
1959	chr4	180178377	180178378	rs11131920	32227373	Osazuwa-Peters OL	2020-03-29	Genet Epidemiol	Identifying blood pressure loci whose effects are modulated by multiple lifestyle exposures.	Diastolic blood pressure x dichotomous lifestyle risk score interaction (1df test)	1,924 European ancestry unexposed individuals, 4,330 European ancestry exposed individuals	NA	4q34.3	intergenic	rs11131920-G	0.01	9E-8		5.29	[3.35-7.23] unit increase	NR [2407627] (imputed)	N
1959	chr4	180178377	180178378	rs11131920	32227373	Osazuwa-Peters OL	2020-03-29	Genet Epidemiol	Identifying blood pressure loci whose effects are modulated by multiple lifestyle exposures.	Diastolic blood pressure	6,253 European ancestry individuals	NA	4q34.3	intergenic	rs11131920-G	0.01	4E-14		5.1	[3.79-6.41] unit decrease	NR [~ 24000000] (imputed)	N
1959	chr4	180186550	180186551	rs17067290	31748705	Ohta Y	2019-11-20	Hypertens Res	Genetic factors associated with elevation of uric acid after treatment with thiazide-like diuretic in patients with essential hypertension.	Uric acid elevation in response to thiazide-like diuretic in hypertension	73 Japanese ancestry responders, 53 Japanese ancestry non-responders	NA	4q34.3	NR	rs17067290-T	NR	6E-6	(allelic model)	8.4	[NR]	Affymetrix [290698]	N
1959	chr4	180187033	180187034	rs6850421	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	4q34.3	NA	rs6850421-A	0.4564	4E-9		0.0113	[0.0076-0.015] unit increase	NR [~ 27400000] (imputed)	N
1960	chr4	180260172	180260173	rs62342914	29855589	Chernus J	2018-05-31	Sci Rep	GWAS reveals loci associated with velopharyngeal dysfunction.	Velopharyngeal dysfunction	54 Hispanic or Latin American and unknown ancestry cases, 922 Hispanic or Latin American and unknown ancestry controls	NA	4q34.3	NR	rs62342914-?	NR	8E-6		0.10212541	[NR] unit decrease	Illumina [at least 269494] (imputed)	N
1960	chr4	180284813	180284814	rs6811556	20848476	Haritunians T	2010-11-01	Inflamm Bowel Dis	Genetic predictors of medically refractory ulcerative colitis.	Ulcerative colitis	324 European ancestry medically refractory ulcerative colitis cases, 537 European ancestry non-medically refractory ulcerative colitis cases, 2,601 European ancestry controls	NA		intergenic	rs6811556-A	NR	9E-6	(Analysis II)			Illumina [313720]	N
1960	chr4	180291431	180291432	rs28593751	31430377	Chung J	2019-08-20	Brain	Genome-wide association study of cerebral small vessel disease reveals established and novel loci.	Non-lobar intracerebral hemorrhage (MTAG)	at least 1,005 European ancestry cases, at least 1,711 European ancestry controls	NA	4q34.3	Intergenic	rs28593751-?	NR	6E-6		1.06	[1.04-1.08]	Affymetrix, Illumina [39235000] (imputed)	N
1960	chr4	180312808	180312809	rs6812281	28120872	Li X	2017-01-25	Sci Rep	Genome-wide association study identifies four SNPs associated with response to platinum-based neoadjuvant chemotherapy for cervical cancer.	Response to platinum-based neoadjuvant chemotherapy in cervical cancer	66 Han Chinese ancestry non-responder cases, 160 Han Chinese ancestry responder cases	79 Han Chinese ancestry non-responder cases, 291 Han Chinese ancestry responder cases	4q34.3	intergenic	rs6812281-T	0.18	9E-9		2.37	[1.77-3.18]	Affymetrix [657178]	N
1960	chr4	180335567	180335568	rs748053358	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	4q34.3	NR	rs748053358-?	NR	9E-6		0.0073472	[0.0041-0.0106] unit increase	Affymetrix [805426] (imputed)	N
1961	chr4	180356845	180356846	rs1378552	25628336	Hromatka BS	2015-01-26	Hum Mol Genet	Genetic variants associated with motion sickness point to roles for inner ear development, neurological processes and glucose homeostasis.	Motion sickness	80,494 European ancestry individuals	NA	4q34.3	AGA	rs1378552-T	0.322	4E-9		0.032	[0.022-0.043] unit decrease	Illumina [7428049] (imputed)	N
1961	chr4	180371453	180371454	rs62341872	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	4q34.3		rs62341872-?	NR	6E-9				NR [~ 8900000] (imputed)	N
1961	chr4	180383311	180383312	rs2716816	22747683	Eriksson N	2012-06-30	BMC Med Genet	Genetic variants associated with breast size also influence breast cancer risk.	Breast size	16,175 European ancestry female individuals	NA	4q34.3	RPL19P8	rs2716816-C	0.149	7E-6		0.098	[0.055-0.141] cup size increase	Illumina [7422970] (imputed)	N
1961	chr4	180430232	180430233	rs148187659	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q34.3	NR	rs148187659-G	0.01045	7E-11	(RBMX)	0.1775	NR unit increase	Illumina [1671387] (imputed)	N
1961	chr4	180470439	180470440	rs2716769	31201950	Lutz MW	2019-03-06	Neurobiol Aging	Analysis of pleiotropic genetic effects on cognitive impairment, systemic inflammation, and plasma lipids in the Health and Retirement Study.	Serum total cholesterol levels	6,545 European ancestry individuals	NA	4q34.3		rs2716769-G	0.35	1E-7		4.62	[2.90-6.33] unit increase	Illumina [19468843] (imputed)	N
1961	chr4	180470439	180470440	rs2716769	31201950	Lutz MW	2019-03-06	Neurobiol Aging	Analysis of pleiotropic genetic effects on cognitive impairment, systemic inflammation, and plasma lipids in the Health and Retirement Study.	Low density lipoprotein cholesterol levels	6,545 European ancestry individuals	NA	4q34.3		rs2716769-G	0.35	2E-7		4.83	[3.01-6.66] unit increase	Illumina [19468843] (imputed)	N
1961	chr4	180473635	180473636	rs760278682	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	4q34.3	NR	rs760278682-?	NR	1E-6		0.0080594	[0.0048-0.0113] unit increase	Affymetrix [805426] (imputed)	N
1962	chr4	180513639	180513640	rs28757816	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q34.3	NR	rs28757816-T	0.0122	2E-8	(ENO3)	0.9647	NR unit increase	Illumina [1671387] (imputed)	N
1962	chr4	180544398	180544399	rs185866804	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung adenocarcinoma	11,273 European ancestry cases,  55,483 European ancestry controls	NA	4q34.3	LINC01098, LINC00290	rs185866804-A	0.011101164	6E-6		1.486243	[1.251461915-1.765070394]	Illumina [10439017] (imputed)	N
1963	chr4	180655624	180655625	rs17746001	22688191	Bergen SE	2012-06-12	Mol Psychiatry	Genome-wide association study in a Swedish population yields support for greater CNV and MHC involvement in schizophrenia compared with bipolar disorder.	Bipolar disorder and schizophrenia	2,111 European ancestry schizophrenia cases, 836 European ancestry bipolar disorder cases, 2,535 European ancestry controls	NA	4q34.3	intergenic	rs17746001-T	NR	3E-7		1.75	[NR]	Affymetrix [745006]	N
1963	chr4	180655624	180655625	rs17746001	22688191	Bergen SE	2012-06-12	Mol Psychiatry	Genome-wide association study in a Swedish population yields support for greater CNV and MHC involvement in schizophrenia compared with bipolar disorder.	Bipolar disorder and schizophrenia	2,111 European ancestry schizophrenia cases, 836 European ancestry bipolar disorder cases, 2,535 European ancestry controls	NA	4q34.3	intergenic	rs17746001-?	NR	3E-7		1.75	[NR]	Affymetrix [745006]	N
1963	chr4	180655624	180655625	rs17746001	22688191	Bergen SE	2012-06-12	Mol Psychiatry	Genome-wide association study in a Swedish population yields support for greater CNV and MHC involvement in schizophrenia compared with bipolar disorder.	Bipolar disorder	836 European ancestry cases, 2,093 European ancestry controls	NA	4q34.3	intergenic	rs17746001-T	NR	3E-7		2.03	[NR]	Affymetrix [745006]	N
1963	chr4	180664652	180664653	rs2383393	19851299	Johansson A	2009-10-22	Obesity (Silver Spring)	Linkage and genome-wide association analysis of obesity-related phenotypes: association of weight with the MGAT1 gene.	Body mass index	1,079 South Tyrolean individuals, 790 Dutch founder individuals, 2,060 European ancestry individuals	NA	4q34.3	NR	rs2383393-G	0.63	2E-6	(males)	0.1	[NR] kg increase	Illumina [318237]	N
1963	chr4	180665475	180665476	rs17090639	29532581	Hallfors J	2018-03-13	Addict Biol	Genome-wide association study in Finnish twins highlights the connection between nicotine addiction and neurotrophin signaling pathway.	Nicotine dependence symptom count	1,715 Finnish ancestry ever smoker individuals from 739 families	NA	4q34.3	NR	rs17090639-G	0.072	9E-6		0.52	[0.28-0.76] unit decrease	Illumina [9469131] (imputed)	N
1963	chr4	180667646	180667647	rs17090640	23412934	Gourraud PA	2013-02-13	Brain	A genome-wide association study of brain lesion distribution in multiple sclerosis.	Multiple sclerosis	284 European ancestry individuals		4q34.3	LOC285501	rs17090640-?		3E-6	(Cluxel size)			Illumina [208975]	N
1963	chr4	180669827	180669828	rs73005745	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Endometriosis	645 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	4q34.3	Intergenic	rs73005745-?		8E-6		2.91	[1.82-4.65]	Illumina [7645193] (imputed)	N
1963	chr4	180673988	180673989	rs11736994	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	4q34.3	LOC285500	rs11736994-A	0.266	2E-9		0.0081	[0.0056-0.0106] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
1963	chr4	180678225	180678226	rs13125519	25387708	Vaidyanathan U	2014-12-01	Psychophysiology	Heritability and molecular genetic basis of acoustic startle eye blink and affectively modulated startle response: a genome-wide association study.	Acoustic startle blink response	3,323 European ancestry twins and their parents	NA	4q34.3	intergenic	rs13125519-?	NR	5E-6	(Pleasant Difference Startle Scores)	0.127	[0.072-0.182] unit decrease	Illumina [527829]	N
1963	chr4	180687999	180688000	rs6844851	21254220	Jiang Y	2011-02-01	Genet Epidemiol	Propensity score-based nonparametric test revealing genetic variants underlying bipolar disorder.	Bipolar disorder	1,868 European ancestry cases, 2,938 European ancestry controls	NA	4q34.3	NR	rs6844851-?	NR	9E-7	(dominant)			Affymetrix [NR]	N
1963	chr4	180693569	180693570	rs56125424	33589587	Sakaue S	2021-02-15	Nat Commun	Genetic determinants of risk in autoimmune pulmonary alveolar proteinosis.	Autoimmune pulmonary alveolar proteinosis	198 Japanese ancestry cases, 395 Japanese ancestry controls	NA	4q34.3	NR	rs56125424-?	0.11	2E-7		3.0	[2.0-4.6]	Illumina [12153232] (imputed)	N
1963	chr4	180704917	180704918	rs11495908	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	4q34.3	intergenic	rs11495908-G	0.086	4E-6	(ALT/AST)	0.03	[NR] unit increase	Illumina [899892]	N
1963	chr4	180704917	180704918	rs11495908	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	4q34.3	intergenic	rs11495908-G	0.086	2E-6	(AST/ALT)	0.03	[NR] unit increase	Illumina [899892]	N
1963	chr4	180717228	180717229	rs58415005	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Abstraction and mental flexibility	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	4q34.3	TENM3	rs58415005-C	NR	8E-7		0.52767706	[0.33-0.73] unit decrease	Illumina [> 6200000] (imputed)	N
1965	chr4	180968430	180968431	rs1994816	23502783	Weinhold N	2013-03-17	Nat Genet	The CCND1 c.870G>A polymorphism is a risk factor for t(11;14)(q13;q32) multiple myeloma.	Multiple myeloma (IgH translocation)	up to 1,660 European ancestry cases, 7,306 European ancestry controls		4q34.3	NR	rs1994816-A	0.14	5E-7	(non t11;14 and t4;14 IgH translocations vs. controls)	1.76	[1.41-2.20]	Illumina [414804] (imputed)	N
1966	chr4	181103728	181103729	rs2309284	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	4q34.3	LOC391719, hCG_2025798	rs2309284-A	0.023	7E-7		4.43	[2.34-8.38]	Illumina [1556551]	N
1967	chr4	181168110	181168111	rs80226959	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q34.3	NR	rs80226959-C	0.04704	1E-8	(PRTN3)	0.03303	NR unit increase	Illumina [1671387] (imputed)	N
1967	chr4	181200773	181200774	rs4861845	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric areal bone mineral density (radius)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	4q34.3	NR	rs4861845-G	0.229	2E-6	(Females)	0.326953	[0.19-0.46] unit decrease	Illumina [~ 6600000] (imputed)	N
1967	chr4	181224834	181224835	rs72715458	27976721	Wang Z	2016-12-15	Nat Commun	A large-scale genome-wide association and meta-analysis identified four novel susceptibility loci for leprosy.	Leprosy	2,743 Chinese ancestry cases, 3,573 Chinese ancestry controls	5,413 Han Chinese ancestry cases, 12,037 Han Chinese ancestry controls	4q34.3	intergenic	rs72715458-G	0.84	3E-7		1.1764705		Illumina [5546030] (imputed)	N
1967	chr4	181229199	181229200	rs17834666	23319000	Luykx JJ	2013-01-15	Mol Psychiatry	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA/MHPG ratio)	up to 398 European ancestry individuals	NA	4q34.3	intergenic	rs17834666-A		1E-6		0.307	unit increase	Illumina [5767231] (imputed)	N
1967	chr4	181229199	181229200	rs17834666	23319000	Luykx JJ	2013-01-15	Mol Psychiatry	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA)	up to 398 European ancestry individuals	NA	4q34.3	intergenic	rs17834666-A	NR	8E-6		0.2201	unit increase	Illumina [5767231] (imputed)	N
1968	chr4	181295237	181295238	rs7699884	25475840	Colodro-Conde L	2014-12-05	Twin Res Hum Genet	A twin study of breastfeeding with a preliminary genome-wide association scan.	Breastfeeding duration	1,521 mothers from 1,073 families	NA	4q34.3	intergenic	rs7699884-?	NR	8E-6		0.179	[0.10-0.26] unit increase	Illumina [6590000] (imputed)	N
1968	chr4	181301382	181301383	rs6815597	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	4q34.3	NR	rs6815597-A	0.257	9E-11		0.00799809	[0.0056-0.0104] unit decrease	NR [9732723] (imputed)	N
1968	chr4	181310703	181310704	rs73010975	33225922	Adebamowo SN	2020-11-23	BMC Med Genet	Genome-wide association study of prevalent and persistent cervical high-risk human papillomavirus (HPV) infection.	Cervical high-risk human papilloma virus infection	125 Nigerian ancestry cases, 392 Nigerian ancestry controls	NA	4q34.3	NCRNA00290	rs73010975-?	NR	2E-6		3.86	2.22-6.72	Illumina [~ 18000000] (imputed)	N
1968	chr4	181322162	181322163	rs530490126	30070759	Olsson M	2018-08-02	J Thromb Haemost	Genome-wide analysis of genetic determinants of circulating factor VII activating protease (FSAP) activity.	Plasma factor VII activating protease levels	3,126 Swedish ancestry individuals	NA	4q34.3	Intergenic	rs530490126-?		9E-6		164.4	[91.68-237.12] unit increase	Illumina [~ 10000000] (imputed)	N
1968	chr4	181337047	181337048	rs10032344	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	4q34.3	LOC285501	rs10032344-?	NR	9E-6	(xanthine)	0.42066002	[0.23-0.61] unit increase	Affymetrix [at least 2500000] (imputed)	N
1968	chr4	181396366	181396367	rs75624142	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	4q34.3	NDUFB5P1	rs75624142-T	0.0156	3E-6		0.1458	[0.085-0.207] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1968	chr4	181402013	181402014	rs139611311	30718321	Sanchez-Roige S	2019-02-04	J Neurosci	Genome-wide association studies of impulsive personality traits (BIS-11 and UPPSP) and drug experimentation in up to 22,861 adult research participants identify loci in the CACNA1I and CADM2 genes.	Impulsivity (non-planning)	21,786 European ancestry individuals	NA	4q34.3	intergenic	rs139611311-G	0.9906	2E-7		0.289	[0.180-0.398] unit increase	Illumina [11434023] (imputed)	N
1969	chr4	181480237	181480238	rs13134598	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	4q34.3	NR	rs13134598-G	0.459	4E-9		0.00639701	[0.0043-0.0085] unit decrease	NR [9732723] (imputed)	N
1969	chr4	181485608	181485609	rs35590005	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	4q34.3		rs35590005-G	0.513	1E-9		0.007	[0.005-0.009] unit increase	NR [NR] (imputed)	N
1969	chr4	181485608	181485609	rs35590005	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	4q34.3	TENM3	rs35590005-C	0.488	3E-9		0.007	[0.0046-0.0094] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
1969	chr4	181526882	181526883	rs75124608	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip	15 Asian ancestry cases, 13 European ancestry cases, 15 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	4q34.3	NR	rs75124608-?	NR	7E-7		4.4	[3.29-5.9]	Illumina [539000] (imputed)	N
1970	chr4	181536945	181536946	rs3113767	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	4q34.3	TENM3	rs3113767-T	0.845	1E-8		0.002	[0.0012-0.0028] unit increase	Affymetrix [15275733] (imputed)	N
1970	chr4	181585314	181585315	rs12500470	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	4q34.3	DCTD	rs12500470-?	NR	3E-6	(aspartate)	0.23139063	[0.13-0.33] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1972	chr4	181796974	181796975	rs150058699	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	4q34.3	intergenic	rs150058699-G	0.0110770684532881	9E-6	(G_Coprococcus_HB)	1.46524	[0.82-2.11] unit decrease	Illumina [7711310] (imputed)	N
1972	chr4	181816869	181816870	rs2177223	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Chronic kidney disease x type 2 diabetes interaction	67,403 European ancestry cases, 129,827 European ancestry controls	NA	4q34.3	TENM3	rs2177223-C	0.038	3E-8				Affymetrix [at least 723305] (imputed)	N
1972	chr4	181885904	181885905	rs13115400	28247064	Deming Y	2017-02-28	Acta Neuropathol	Genome-wide association study identifies four novel loci associated with Alzheimer's endophenotypes and disease modifiers.	Cerebrospinal fluid AB1-42 levels	3,146 individuals	NA	4q34.3	LINC00290	rs13115400-A	0.357	3E-6		0.019	[0.011-0.027] unit increase	Illumina [7358575] (imputed)	N
1972	chr4	181919553	181919554	rs11132036	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	4q34.3	NR	rs11132036-T	0.259	4E-6	(IFNalpha_ABC_of_CD4p_T)			Illumina [5084123] (imputed)	N
1973	chr4	181930960	181930961	rs13138395	30219690	Heinzman JT	2018-09-07	J Affect Disord	GWAS and systems biology analysis of depressive symptoms among smokers from the COPDGene cohort.	Depression in smokers	1,622 European ancestry cases, 391 African American cases, 4,954 European ancestry controls, 2,749 African American controls	NA	4q34.3	LINC00290	rs13138395-T	0.6502	2E-6	(AA)			Illumina [NR] (imputed)	N
1973	chr4	181945566	181945567	rs71619047	34020725	Reddy JS	2021-05-21	Acta Neuropathol Commun	Genome-wide analysis identifies a novel LINC-PINT splice variant associated with vascular amyloid pathology in Alzheimer's disease.	Cerebral amyloid angiopathy x APOEe4 status interaction in Alzheimer's disease	534 European ancestry APOEe4 carriers, 287 European ancestry APOEe4 non-carriers	NA		LINC00290	rs71619047-A	0.04	3E-7				Illumina [1679420] (imputed)	N
1973	chr4	181959787	181959788	rs55656647	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Small cell lung carcinoma	2,664 European ancestry cases,  21,444 European ancestry controls	NA	4q34.3	NONE, LINC00290	rs55656647-C	0.087723238	7E-6		1.3116096	[1.165572775-1.475943646]	Illumina [10439017] (imputed)	N
1973	chr4	182035005	182035006	rs143725757	28084903	Hallberg P	2017-01-13	Pharmacogenomics	Genetic variants associated with angiotensin-converting enzyme inhibitor-induced cough: a genome-wide association study in a Swedish population.	Cough in response to angiotensin-converting enzyme inhibitor drugs	123 European ancestry cases, 1,345 European and unknown ancestry controls, 1 Middle Eastern ancestry case	NR	4q34.3	LINC00290	rs143725757-?	NR	8E-7		8.09	[3.53-18.57]	Illumina [8600000] (imputed)	N
1974	chr4	182066383	182066384	rs116622969	32066700	Zhang R	2020-02-05	Transl Psychiatry	Genome-wide study of immune biomarkers in cerebrospinal fluid and serum from patients with bipolar disorder and controls.	Serum immune biomarker levels	184 Scandinavian ancestry bipolar disorder cases, 107 Scandinavian ancestry controls	NA	4q34.3	intergenic	rs116622969-T	0.983	3E-10	(YKL-40)	36.776	NR unit decrease	Affymetrix, Illumina [> 5000000] (imputed)	N
1974	chr4	182096417	182096418	rs55961658	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or recurrent major depressive disorder x sex interaction	31,567 European ancestry schizophrenia cases,19,924 European ancestry bipolar disorder cases, 5,314 European ancestry recurrent major depressive disorder cases, 78,190 European ancestry controls, 1,836 East Asian ancestry schizophrenia cases, 3,383 East Asian ancestry controls	NA	4q34.3	LINC00290, TEMN3-AS1	rs55961658-T	0.4558	8E-6		0.1523	[0.085-0.219] unit decrease	NR [NR] (imputed)	N
1974	chr4	182096417	182096418	rs55961658	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or recurrent major depressive disorder x sex interaction	31,567 European ancestry schizophrenia cases,19,924 European ancestry bipolar disorder cases, 5,314 European ancestry recurrent major depressive disorder cases, 78,190 European ancestry controls	NA	4q34.3	LINC00290, TEMN3-AS1	rs55961658-T	0.4558	8E-6		0.1523	[0.085-0.219] unit decrease	NR [NR] (imputed)	N
1974	chr4	182101688	182101689	rs10018288	25778476	Jun G	2015-03-17	Mol Psychiatry	A novel Alzheimer disease locus located near the gene encoding tau protein.	Alzheimer's disease in APOE e4+ carriers	10,352 cases, 9,207 controls	1,250 European ancestry cases, 536 European ancestry controls	4q34.3	LINC00290, MGC45800	rs10018288-G	0.19	4E-6		1.16	[1.09-1.24]	NR [NR]	N
1974	chr4	182115415	182115416	rs76873050	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4q34.3	Intergenic	rs76873050-T	0.073	5E-6		0.088	NR unit increase	Illumina [NR] (imputed)	N
1974	chr4	182163056	182163057	rs78796196	31324189	Kim W	2019-07-19	Respir Res	DSP variants may be associated with longitudinal change in quantitative emphysema.	Emphysema annual change measurement in smokers (percent low attenuation area)	4,427 European ancestry individuals, 1,158 African American individuals	NA	4q34.3	TENM3	rs78796196-C	0.982	3E-7	(EA)	0.391	[0.24-0.54] unit increase	Illumina [NR] (imputed)	N
1974	chr4	182164088	182164089	rs11934532	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	4q34.3		rs11934532-A	0.733	3E-8		0.007	[0.005-0.009] unit increase	NR [NR] (imputed)	N
1974	chr4	182178305	182178306	rs17830069	28002826	D'Adamo CR	2016-12-22	J Nutrigenet Nutrigenomics	The CAPN2/CAPN8 Locus on Chromosome 1q Is Associated with Variation in Serum Alpha-Carotene Concentrations.	Carotenoid levels (alpha-carotene)	433 Old Order Amish individuals	NA	4q34.3	LINC00290	rs17830069-G	0.02	3E-8		0.38	[0.24-0.52] ?mol/L increase	Affymetrix [2193082] (imputed)	N
1975	chr4	182197946	182197947	rs1454694	24737549	Yoon KA	2014-04-15	Clin Cancer Res	Genetic variations associated with postoperative recurrence in stage I non-small cell lung cancer.	Non-small cell lung cancer (recurrence rate)	250 Korean ancestry cases	308 Korean ancestry cases	4q34.3	LINC00290	rs1454694-C	0.21	9E-8		2.12	[1.61-2.79]	Affymetrix [308098]	N
1975	chr4	182222726	182222727	rs17183114	23400010	Del-Aguila JL	2013-02-12	Pharmacogenomics J	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NA	4q34.3	intergenic	rs17183114-T	0.14	8E-6	(EA-triglyceride response)	26.49	[14.89-38.09] mg/dL increase	Affymetrix, Illumina [> 2000000] (imputed)	N
1975	chr4	182293082	182293083	rs6552496	28317148	Campo C	2017-01-01	Hematol Oncol	Bortezomib-induced peripheral neuropathy: A genome-wide association study on multiple myeloma patients.	Bortezomib-induced peripheral neuropathy in multiple myeloma	102 European ancestry cases and 544 European ancestry controls.	NR	4q34.3	TENM3, RP11-665C14.2	rs6552496-C	NR	8E-6		2.0	[1.46-2.76]	Illumina [NR] (imputed)	N
1976	chr4	182322804	182322805	rs11132055	28881265	Sobalska-Kwapis M	2017-09-01	Eur J Obstet Gynecol Reprod Biol	New variants near RHOJ and C2, HLA-DRA region and susceptibility to endometriosis in the Polish population-The genome-wide association study.	Endometriosis	171 European ancestry cases, 2,934 European ancestry controls	NA	4q34.3	NR	rs11132055-T	0.169	8E-8		2.092	[1.588-2.755]	Illumina [274400]	N
1976	chr4	182329790	182329791	rs6857563	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	4q34.3	NR	rs6857563-T	0.417	1E-7	(IFNalpha_ABC_of_CD8p_T)			Illumina [5084123] (imputed)	N
1976	chr4	182360985	182360986	rs6839193	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Systolic blood pressure (baseline)	5,304 African American individuals, 13,137 European ancestry individuals, 1,317 Hispanic individuals, 1,439 admixed individuals, 703 Chinese ancestry individuals	6,500 African American individuals, 2,451 European ancestry individuals, 2,869 Hispanic individuals	4q34.3	NR	rs6839193-A	0.542	6E-7		0.6698	[0.41-0.93] mmHg increase	Affymetrix, Illumina [NR] (imputed)	N
1976	chr4	182399694	182399695	rs7672826	19010793	Baranzini SE	2008-11-14	Hum Mol Genet	Genome-wide association analysis of susceptibility and clinical phenotype in multiple sclerosis.	Multiple sclerosis	978 European ancestry cases, 883 European ancestry controls	NA		MGC45800	rs7672826-?	0.34	8E-6		1.37	[NR]	Illumina [551642]	N
1976	chr4	182402278	182402279	rs201548249	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	4q34.3	NR	rs201548249-?	NR	6E-6	(female)	0.1765	[0.1-0.253] unit increase	Illumina [11133794] (imputed)	N
1976	chr4	182407877	182407878	rs17198973	30161160	Onishi H	2018-08-30	PLoS One	A genome-wide association study identifies three novel genetic markers for response to tamoxifen: A prospective multicenter study.	Response to tamoxifen in oestrogen receptor positive/HER2 negative breast cancer	275 East Asian ancestry individuals	72 East Asian or Asian ancestry individuals	4q34.3	NR	rs17198973-C	0.35	6E-6				Illumina [519335] (imputed)	N
1976	chr4	182411579	182411580	rs4861477	30161160	Onishi H	2018-08-30	PLoS One	A genome-wide association study identifies three novel genetic markers for response to tamoxifen: A prospective multicenter study.	Response to tamoxifen in oestrogen receptor positive/HER2 negative breast cancer	275 East Asian ancestry individuals	72 East Asian or Asian ancestry individuals	4q34.3	NR	rs4861477-C	0.15	8E-6				Illumina [519335] (imputed)	N
1976	chr4	182447322	182447323	rs974578	34390503	Yang G	2021-08-14	Clin Pharmacol Ther	Genome-wide Association Study Identified Chromosome 8 Locus Associated with Medication-related Osteonecrosis of the Jaw.	Bisphosphonate-related osteonecrosis of the jaw in cancer (i.v. bisphosphonate)	217 European ancestry cases, 2,208 European ancestry controls	109 European ancestry cases, 1,105 European ancestry controls	4q34.3		rs974578-T	0.29	4E-6		2.14	[1.55-2.96]	Illumina [126146] (imputed)	N
1977	chr4	182480574	182480575	rs13115750	25271088	Singh A	2014-10-01	Eur J Hum Genet	Gene by stress genome-wide interaction analysis and path analysis identify EBF1 as a cardiovascular and metabolic risk gene.	Hip circumference (psychosocial stress interaction)	2,460 European ancestry individuals, 548 Chinese ancestry individuals,   1,547 African American individuals, 1,250 Hispanic individuals	3,157 European ancestry individuals	4q34.3	intergenic	rs13115750-?	NR	9E-6	(Hispanics)			Affymetrix [528298]	N
1977	chr4	182484768	182484769	rs1439283	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (unclassified genus belonging to family Erysipelotrichaceae)	1,068 Japanese ancestry individuals	NA	4q34.3	intergenic	rs1439283-T	0.23	7E-6		0.162	[0.091-0.233] unit increase	Illumina [6380737] (imputed)	N
1977	chr4	182484768	182484769	rs1439283	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	4q34.3	intergenic	rs1439283-A	0.48	1E-6	(Light activity )	0.04	[NR] %awake time increase	Illumina [899892]	N
1977	chr4	182564315	182564316	rs58173766	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (underestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	4q34.3	NR	rs58173766-?	NR	4E-9		5.873	NR z score increase	Illumina [at least 830937] (imputed)	N
1977	chr4	182568249	182568250	rs17278117	21685187	Siedlinski M	2011-06-16	Thorax	Genome-wide association study of smoking behaviours in patients with COPD.	Age at smoking initiation in chronic obstructive pulmonary disease	3,397 European ancestry cases	NA	4q34.3	intergenic	rs17278117-A	0.96	2E-6		0.093	unit increase	Illumina [~ 6300000] (imputed)	N
1977	chr4	182571618	182571619	rs17212303	21685187	Siedlinski M	2011-06-16	Thorax	Genome-wide association study of smoking behaviours in patients with COPD.	Age at smoking initiation in chronic obstructive pulmonary disease	3,397 European ancestry cases	NA	4q34.3	intergenic	rs17212303-C	0.96	2E-6		0.094	unit increase	Illumina [~ 6300000] (imputed)	N
1978	chr4	182593927	182593928	rs145955468	31996736	Elsheikh SSM	2020-01-29	Sci Rep	Genome-Wide Association Study of Brain Connectivity Changes for Alzheimer's Disease.	Longitudinal brain connectivity change (Louvain modularity)	57 European ancestry individuals	NA	4q34.3	NR	rs145955468-G	NR	1E-6		4.88	z score increase	NR [9015039] (imputed)	N
1978	chr4	182609864	182609865	rs12641856	23551011	Zhao L	2013-04-02	Ann Hum Genet	Genome-wide association study of pre-eclampsia detects novel maternal single nucleotide polymorphisms and copy-number variants in subsets of the Hyperglycemia and Adverse Pregnancy Outcome (HAPO) study cohort.	Preeclampsia	21 Afro-Caribbean cases, 1,010 Afro-Caribbean controls, 50 European ancestry cases, 1,202 European ancestry controls, 62 Hispanic cases, 658 Hispanic controls	NA	4q34.3	MGC45800	rs12641856-?	NR	2E-6	(Afro-Caribbean)	15.19	[4.98-46.35]	Illumina [2485249] (imputed)	N
1978	chr4	182630452	182630453	rs35619804	28957384	Kim SK	2017-09-28	PLoS One	Two genetic loci associated with ankle injury.	Ankle injury	1,421 European ancestry cases, 154 Hispanic/Latino cases, 121 East Asian ancestry cases, 81,843 European ancestry controls, 8,406 Hispanic/Latino controls, 7,397 East Asian ancestry controls	NA	4q34.3	NR	rs35619804-A	NR	5E-6		1.1854		Affymetrix [8183964] (imputed)	N
1978	chr4	182633198	182633199	rs2309536	34523824	Lakshman Kumar P	2021-09-15	J Cachexia Sarcopenia Muscle	Genetic variation in genes regulating skeletal muscle regeneration and tissue remodelling associated with weight loss in chronic obstructive pulmonary disease.	Weight loss in chronic obstructive pulmonary disease	1,380 non-Hispanic White ancestry individuals	2,389 non-Hispanic White ancestry individuals	4q34.3		rs2309536-T	NR	1E-6		1.6	[1.3-1.9]	Illumina [5405435] (imputed)	N
1978	chr4	182635288	182635289	rs17281245	27958378	Floyd JS	2016-12-13	Pharmacogenomics J	Large-scale pharmacogenomic study of sulfonylureas and the QT, JT and QRS intervals: CHARGE Pharmacogenomics Working Group.	JT interval (sulfonylurea treatment interaction)	2,095 European ancestry exposed individuals, 42,907 European ancestry unexposed individuals, 1,167 African American exposed individuals, 10,564 African American unexposed individuals, 794 Hispanic/Latino American exposed individuals, 14,330 Hispanic/Latino American unexposed individuals	NA	4q34.3	TENM3	rs17281245-?	NR	5E-9	(AA)	8.8	[5.86-11.74] ms increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1978	chr4	182641213	182641214	rs12502114	27595289	Goyal RK	2016-09-05	Bone Marrow Transplant	Novel HLA-DP region susceptibility loci associated with severe acute GvHD.	Acute graft versus host disease in bone marrow transplantation (recipient effect)	291 European ancestry recipients with acute graft versus host disease, 288 European ancestry recipients without acute graft versus host disease	NA	4q34.3	Intergenic	rs12502114-?		3E-7				Affymetrix [905761]	N
1978	chr4	182680708	182680709	rs28503910	31533690	Orlova E	2019-09-18	BMC Oral Health	Pilot GWAS of caries in African-Americans shows genetic heterogeneity.	Dental caries (decayed, missing and filled tooth surfaces)	109 African American adults	NA	4q34.3	NR	rs28503910-?		2E-6		17.13	[11.14-23.12] unit increase	Illumina [~ 4900000] (imputed)	N
1978	chr4	182680708	182680709	rs28503910	31533690	Orlova E	2019-09-18	BMC Oral Health	Pilot GWAS of caries in African-Americans shows genetic heterogeneity.	Dental caries (decayed, missing and filled teeth)	109 African American adults	NA	4q34.3	MIR1305	rs28503910-?		5E-6		4.983	[3.08-6.89] unit increase	Illumina [~ 4900000] (imputed)	N
1978	chr4	182693866	182693867	rs73871707	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	7,894 Sub-Saharan African ancestry individuals	NA	4q34.3		rs73871707-T	0.985711	5E-6		0.0361266	[0.021-0.052] unit decrease	Illumina [13900000] (imputed)	N
1978	chr4	182704550	182704551	rs6855088	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	4q34.3	intergenic	rs6855088-G	0.221	9E-7	(AST )	0.03	[NR] U/L increase	Illumina [899892]	N
1979	chr4	182760365	182760366	rs192647746	30998689	Shadrina AS	2019-04-18	PLoS Genet	Varicose veins of lower extremities: Insights from the first large-scale genetic study.	Varicose veins	10,861 British ancestry cases, 397,594 British ancestry controls	NA	4q34.3		rs192647746-G	0.00111952	9E-7		0.026689	[0.016-0.037] unit increase	Affymetrix [10829469] (imputed)	N
1979	chr4	182760365	182760366	rs192647746	30566020	Fukaya E	2018-12-01	Circulation	Clinical and Genetic Determinants of Varicose Veins.	Varicose veins	9,577 British ancestry cases, 327,959 British ancestry controls	NA	4q34.3	NR	rs192647746-G	0.0011	5E-8		0.863	[0.55-1.17] unit increase	Affymetrix [10972371] (imputed)	N
1979	chr4	182776776	182776777	rs28625169	26806518	Hou L	2016-01-22	Lancet	Genetic variants associated with response to lithium treatment in bipolar disorder: a genome-wide association study.	Response to lithium treatment in bipolar disorder (dichotomous phenotype)	659 European ancestry responders, 1,684 European ancestry non-responders	NA	4q34.3	Intergenic	rs28625169-T	0.37	9E-7		1.43	[1.24-1.65]	Affymetrix, Illumina [> 6000000] (imputed)	N
1979	chr4	182782544	182782545	rs10520514	24204828	Zheng JS	2013-10-28	PLoS One	Genome-wide contribution of genotype by environment interaction to variation of diabetes-related traits.	Homeostasis model assessment of insulin resistance (dietary factor interaction)	820 European ancestry individuals	NA	4q34.3	LOC728191, LOC100128118	rs10520514-A	0.415	5E-6	(Carbohydrate)			Affymetrix [590000]	N
1979	chr4	182782544	182782545	rs10520514	24204828	Zheng JS	2013-10-28	PLoS One	Genome-wide contribution of genotype by environment interaction to variation of diabetes-related traits.	Fasting insulin (dietary factor interaction)	820 European ancestry individuals	NA	4q34.3	LOC728191, LOC100128118	rs10520514-A	0.415	5E-6	(Carbohydrate)			Affymetrix [590000]	N
1979	chr4	182796187	182796188	rs72687745	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	4q34.3	NR	rs72687745-?	NR	2E-9				Illumina [7760689] (imputed)	N
1979	chr4	182813297	182813298	rs1028166	25192705	Du M	2014-09-05	Cancer Epidemiol Biomarkers Prev	No evidence of gene-calcium interactions from genome-wide analysis of colorectal cancer risk.	Colorectal cancer (calcium intake interaction)	9,006 European ancestry cases, 9,503 European ancestry controls	NA	4q34.3	TENM3, AGA	rs1028166-G	0.31	7E-7	(Supplemental calcium intake)	1.49	[1.27-1.74]	NR [~ 2700000] (imputed)	N
1979	chr4	182818505	182818506	rs1878469	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	4q34.3	DCTD	rs1878469-?	NR	9E-6	(TAG 54:8)	0.7702309	[0.43-1.11] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1979	chr4	182818505	182818506	rs1878469	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	4q34.3	DCTD	rs1878469-?	NR	9E-6	(TAG 44:1)	0.770786	[0.43-1.11] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1979	chr4	182818505	182818506	rs1878469	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	4q34.3	DCTD	rs1878469-?	NR	9E-6	(LPC 14:0)	0.77783805	[0.43-1.12] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1979	chr4	182818505	182818506	rs1878469	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	4q34.3	DCTD	rs1878469-?	NR	6E-6	(TAG 48:3)	0.7887695	[0.45-1.13] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1979	chr4	182818505	182818506	rs1878469	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	4q34.3	DCTD	rs1878469-?	NR	5E-6	(TAG 52:6)	0.791205	[0.45-1.13] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1979	chr4	182818505	182818506	rs1878469	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	4q34.3	DCTD	rs1878469-?	NR	5E-6	(PC 32:2)	0.8005613	[0.46-1.14] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1979	chr4	182818505	182818506	rs1878469	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	4q34.3	DCTD	rs1878469-?	NR	2E-6	(TAG 48:4)	0.8242737	[0.48-1.16] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1979	chr4	182822331	182822332	rs1878468	29381699	Ravenhall M	2018-01-30	PLoS Genet	Novel genetic polymorphisms associated with severe malaria and under selective pressure in North-eastern Tanzania.	Severe malaria (adjusted for sickle cell variant rs334)	449 Tanzanian ancestry cases, 465 Tanzanian ancestry controls	NA	4q34.3	AC108142.1	rs1878468-?	NR	1E-6	(Heterozygous)		[NR]	Illumina [15200000] (imputed)	N
1979	chr4	182822331	182822332	rs1878468	29381699	Ravenhall M	2018-01-30	PLoS Genet	Novel genetic polymorphisms associated with severe malaria and under selective pressure in North-eastern Tanzania.	Severe malaria	449 Tanzanian ancestry cases, 465 Tanzanian ancestry controls	NA	4q34.3	AC108142.1	rs1878468-?	NR	9E-7	(Heterozygous)	2.6109662	[NR]	Illumina [15200000] (imputed)	N
1979	chr4	182823803	182823804	rs2309554	31092817	Lees JA	2019-05-15	Nat Commun	Joint sequencing of human and pathogen genomes reveals the genetics of pneumococcal meningitis.	Severe bacterial meningitis	277 European and unknown ancestry cases, 4,836 European and unknown ancestry controls	NA	4q34.3	AC108142.1	rs2309554-A	NR	4E-7		1.58	NR	Illumina [6800000] (imputed)	N
1979	chr4	182840939	182840940	rs62351910	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota relative abundance (bacterial taxa)	up to 858 Metropolitan French ancestry individuals	NA	4q34.3	NR	rs62351910-?	NR	3E-8	(Gordonibacter_pamelaeae)	0.474767	[0.32-0.63] unit increase	Illumina [5293637] (imputed)	N
1979	chr4	182840939	182840940	rs62351910	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota relative abundance (bacterial taxa)	up to 858 Metropolitan French ancestry individuals	NA	4q34.3	NR	rs62351910-?	NR	2E-10	(Gordonibacter)	0.483035	[0.35-0.62] unit increase	Illumina [5293637] (imputed)	N
1980	chr4	182893622	182893623	rs114755225	28439531	Aslibekyan S	2017-03-08	J Nutr Intermed Metab	Genome- and CD4+ T-cell methylome-wide association study of circulating trimethylamine-N-oxide in the Genetics of Lipid Lowering Drugs and Diet Network (GOLDN).	Plasma trimethylamine N-oxide levels	626 European ancestry individuals	NA	4q34.3	intergenic	rs114755225-?	NR	3E-9		1.2	[0.81-1.59] uM decrease	Affymetrix [9432837] (imputed)	N
1981	chr4	182990969	182990970	rs17290504	34330890	Ip HF	2021-07-30	Transl Psychiatry	Genetic association study of childhood aggression across raters, instruments, and age.	Childhood aggressive behavior	87,485 European ancestry individuals	NA	4q34.3		rs17290504-C	0.459810297	9E-6		0.012785089	[0.0071-0.0184] unit decrease	Affymetrix, Illumina [up to 7284995] (imputed)	N
1981	chr4	183021634	183021635	rs182847	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Reading ability (multivariate)	up to 3,468 European ancestry individuals	NA	4q34.3	NR	rs182847-?		8E-6				Illumina [up to 6969139] (imputed)	N
1981	chr4	183021634	183021635	rs182847	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Rapid automised naming of digits	2,563 European ancestry individuals	NA	4q34.3	AC108142.1	rs182847-C	0.555722857	1E-6		0.164066	[0.098-0.23] unit increase	Illumina [6952813] (imputed)	N
1981	chr4	183021928	183021929	rs142430746	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 5 levels	252 European ancestry individuals	NA	4q34.3		rs142430746-C	NR	6E-6		0.62287	[0.36-0.89] unit decrease	Illumina [NR] (imputed)	N
1981	chr4	183035264	183035265	rs35446926	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	4q34.3	TENM3	rs35446926-?		2E-11				Affymetrix, Illumina [NR] (imputed)	N
1981	chr4	183036913	183036914	rs17305086	25145502	Tang S	2014-08-22	Ann Surg Oncol	Genome-wide association study of survival in early-stage non-small cell lung cancer.	Non-small cell lung cancer (survival)	354 Han Chinese ancestry cases	327 Han Chinese ancestry cases	4q34.3	NR	rs17305086-?	NR	6E-6		2.14	[1.54-2.98]	Affymetrix [589102]	N
1981	chr4	183039091	183039092	rs7661253	29234017	Carayol J	2017-12-12	Nat Commun	Protein quantitative trait locus study in obesity during weight-loss identifies a leptin regulator.	Protein levels in obesity	494 European ancestry individuals	NA	4q34.3	NR	rs7661253-?	NR	2E-9	(IDS)	0.2	[0.14-0.26] unit decrease	Illumina [4020654] (imputed)	N
1982	chr4	183137397	183137398	rs2726807	22885689	Levinson DF	2012-09-01	Am J Psychiatry	Genome-wide association study of multiplex schizophrenia pedigrees.	Schizophrenia	1,218 European ancestry cases, 990 European ancestry controls, 139 cases, 114 controls	NA	4q34.3	intergenic	rs2726807-?	NR	6E-6	(EA)	1.291	[NR]	Illumina [up to 531195]	N
1982	chr4	183159363	183159364	rs12508476	34847907	Tegelberg P	2021-11-30	BMC Oral Health	Genome-wide association study of periodontal pocketing in Finnish adults.	Periodontal pocket (adjusted for age and sex)	3,906 Finnish ancestry individuals	NA	4q34.3		rs12508476-C	0.83	2E-6		0.16	[0.093-0.227] number of affected teeth increase	Illumina [NR] (imputed)	N
1982	chr4	183166468	183166469	rs7696796	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Neuroticism	274,107 British ancestry individuals	NA	4q34.3	NR	rs7696796-A	0.2464	5E-9		0.01116	[0.0074-0.0149] unit increase	NR [8968716] (imputed)	N
1982	chr4	183166468	183166469	rs7696796	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	4q34.3	TENM3	rs7696796-G	NR	4E-9		0.010422	[0.007-0.0139] unit increase	Affymetrix [18485882] (imputed)	N
1982	chr4	183166468	183166469	rs7696796	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	4q34.3		rs7696796-?	NR	3E-10				NR [~ 8900000] (imputed)	N
1982	chr4	183166468	183166469	rs7696796	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	4q34.3	intergenic	rs7696796-A	0.25319	9E-11		6.49	z score increase	Illumina [18485882] (imputed)	N
1982	chr4	183174981	183174982	rs2726824	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on average household income before tax (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	4q34.3		rs2726824-?	NR	3E-8				NR [NR]	N
1982	chr4	183175898	183175899	rs17309350	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	4q34.3	TENM3	rs17309350-A	NR	1E-8		0.0098429	[0.0065-0.0132] unit increase	Affymetrix [18485882] (imputed)	N
1982	chr4	183179740	183179741	rs34935286	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on highest math class (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	4q34.3		rs34935286-?	NR	4E-8				NR [NR]	N
1982	chr4	183179740	183179741	rs34935286	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on educational attainment (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	4q34.3		rs34935286-?	NR	3E-8				NR [NR]	N
1982	chr4	183200144	183200145	rs11724903	24665060	Argos M	2014-03-24	J Med Genet	Genome-wide association study of smoking behaviours among Bangladeshi adults.	Smoking initiation	754 Bangladeshi ancestry never smoker males, 2,565 Bangladeshi ancestry never smoker females, 1,837 Bangladeshi ancestry ever smoker males, 198 Bangladeshi ancestry ever smoker females	NA	4q34.3	TENM3, MIR1305	rs11724903-?		3E-7	(males)			Illumina [1211988] (imputed)	N
1982	chr4	183226375	183226376	rs6820425	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	4q35.1	DCTD	rs6820425-?	NR	9E-6	(TAG 52:5)	0.21790326	[0.12-0.31] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1983	chr4	183255688	183255689	rs1516535	34642315	Ferreiro-Iglesias A	2021-10-12	Nat Commun	Germline determinants of humoral immune response to HPV-16 protect against oropharyngeal cancer.	Human papilloma virus 16 positive oropharyngeal cancer	1,078 European ancestry cases, 5,256 European ancestry controls	NA	4q35.1		rs1516535-C	NR	1E-7		1.427		Illumina [7574753] (imputed)	N
1983	chr4	183256376	183256377	rs112500619	27749845	Lesseur C	2016-10-17	Nat Genet	Genome-wide association analyses identify new susceptibility loci for oral cavity and pharyngeal cancer.	Oropharynx cancer	2,506 European ancestry cases, 135 cases, 5,984 European ancestry controls, 601 controls	NA	4q35.1	TENM3	rs112500619-C	0.797527099008316	5E-6		1.2391574		Illumina [7574753] (imputed)	N
1983	chr4	183260600	183260601	rs10520528	24058526	Bhatnagar P	2013-09-13	PLoS One	Genome-wide meta-analysis of systolic blood pressure in children with sickle cell disease.	Systolic blood pressure in sickle cell anemia	1617 African American cases	NA	4q35.1	ODZ3	rs10520528-T	0.43	2E-6		1.3	[0.77-1.83] mmHg increase	Illumina [1019297] (imputed)	N
1983	chr4	183266814	183266815	rs79124480	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 9, facial height related to vertical position of nasion)	2,187 European ancestry individuals	NA	4q35.1	NR	rs79124480-G	0.009399	5E-6		0.7048	[0.4-1.01] unit decrease	Illumina [10677593] (imputed)	N
1983	chr4	183293515	183293516	rs6552561	30952644	El Charif O	2019-04-05	Clin Cancer Res	Clinical and Genome-Wide Analysis of Cisplatin-Induced Tinnitus Implicates Novel Ototoxic Mechanisms.	Tinnitus in cisplatin-treated testicular cancer	154 European ancestry cases, 608 European ancestry controls	NA	4q35.1		rs6552561-A	NR	9E-6		1.8521	[1.58-2.12]	Illumina [7225561] (imputed)	N
1983	chr4	183299493	183299494	rs6552563	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	4q35.1	DCTD	rs6552563-?	NR	8E-6	(alpha ketoglutarate)	0.2196422	[0.12-0.32] unit increase	Affymetrix [at least 2500000] (imputed)	N
1983	chr4	183300613	183300614	rs4862046	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	4q35.1	NR	rs4862046-G	0.907650657658059	9E-6	(IGP68)	0.2467	[0.14-0.36] unit increase	Illumina [~ 2500000] (imputed)	N
1983	chr4	183300613	183300614	rs4862046	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	4q35.1	NR	rs4862046-G	0.907610376436526	6E-7	(IGP49)	0.2767	[0.17-0.39] unit increase	Illumina [~ 2500000] (imputed)	N
1984	chr4	183440646	183440647	rs12374220	25477429	Lieb W	2014-12-04	Circ Cardiovasc Genet	Genome-wide meta-analyses of plasma renin activity and concentration reveal association with the kininogen 1 and prekallikrein genes.	Plasma renin activity levels	5,275 European ancestry individuals	NA	4q35.1	TENM3	rs12374220-T	NR	7E-9				Affymetrix, Illumina [~ 2500000] (imputed)	N
1984	chr4	183465310	183465311	rs149211860	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	4q35.1	NR	rs149211860-?	NR	2E-8				Illumina [7760689] (imputed)	N
1984	chr4	183472581	183472582	rs4428328	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	4q35.1	DCTD	rs4428328-?	NR	4E-7	(lactate)	0.27091196	[0.17-0.38] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1984	chr4	183477328	183477329	rs10013166	24839885	Benke KS	2014-02-19	J Am Acad Child Adolesc Psychiatry	A genome-wide association meta-analysis of preschool internalizing problems.	Preschool internalizing problems	3,121 European ancestry individuals, 1,475 children from 1,031 families	NA	4q35.1	NR	rs10013166-A	0.4416	2E-6		0.11	[0.062-0.15] unit increase	Affymetrix, Illumina [2403520] (imputed)	N
1984	chr4	183497775	183497776	rs9996737	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (unassigned genus belonging to family Clostridiales)	1,068 Japanese ancestry individuals	NA	4q35.1	TENM3	rs9996737-G	0.42	8E-6	(male)	0.0694	[0.039-0.1] unit increase	Illumina [6380737] (imputed)	N
1985	chr4	183543647	183543648	rs908084	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	4q35.1	ODZ3, MGC45800, DCTD	rs908084-A	0.044	9E-9		3.97	[2.4-6.56]	Illumina [1556551]	N
1985	chr4	183553032	183553033	rs138013532	31296530	Trendowski MR	2019-07-11	Clin Cancer Res	Clinical and Genome-Wide Analysis of Serum Platinum Levels after Cisplatin-Based Chemotherapy.	Serum platinum levels after completion of cisplatin chemotherapy	866 European ancestry individuals, 17 non-European ancestry individuals, 127 individuals	NR	4q35.1	NR	rs138013532-T	0.0107	1E-6		0.7147	[0.43-1] unit increase	Illumina [7305641] (imputed)	N
1985	chr4	183575355	183575356	rs17073715	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	4q35.1	NR	rs17073715-?	NR	6E-20				Affymetrix [NR]	N
1985	chr4	183581151	183581152	rs4386638	33491795	Timmer T	2021-01-25	Vox Sang	Genetic determinants of ferritin, haemoglobin levels and haemoglobin trajectories: results from Donor InSight.	Ferritin levels	2,649 European ancestry individuals	NA	4q35.1	TENM3	rs4386638-A	0.186	6E-6		0.12	[0.18-0.07] unit decrease	Affymetrix [7435577] (imputed)	N
1985	chr4	183614583	183614584	rs12510251	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	4q35.1	NR	rs12510251-A	NR	1E-7		1.07	[NR]	Illumina [7158791] (imputed)	N
1985	chr4	183624643	183624644	rs7692395	26950853	Dehghan A	2016-03-07	PLoS One	Genome-Wide Association Study for Incident Myocardial Infarction and Coronary Heart Disease in Prospective Cohort Studies: The CHARGE Consortium.	Incident myocardial infarction	1,570 European ancestry cases, at least 21,618 European ancestry controls	2,328 European ancestry cases, 546 African American ancestry cases, 7655 African American ancestry controls, up to 35,233 European ancestry controls	4q35.1	ODZ3	rs7692395-G	NR	3E-7	(EA)	1.4492754	[1.27-1.69]	Affymetrix, Illumina [2543842] (imputed)	N
1986	chr4	183632180	183632181	rs17073903	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Schizophrenia (MTAG)	940,613 European ancestry individuals	NA			rs17073903-?	NR	3E-8				NR [2625067]	N
1986	chr4	183637656	183637657	rs35751669	33169155	Bigdeli TB	2020-11-10	Schizophr Bull	Genome-Wide Association Studies of Schizophrenia and Bipolar Disorder in a Diverse Cohort of US Veterans.	Schizophrenia	37,759 European ancestry cases, 7,509 African American cases, 1,234 Latino cases, 22,778 East Asian ancestry cases, 91,590 European ancestry controls, 8,337 African American controls, 3,090 Latino controls, 35,362 East Asian ancestry controls	NA	4q35.1	TENM3	rs35751669-A	NR	5E-8		1.05	[1.03-1.07]	Affymetrix [up to 49134253] (imputed)	N
1986	chr4	183637656	183637657	rs35751669	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	4q35.1	ODZ3	rs35751669-G	NR	4E-8	(EA)	1.085305	[1.06-1.11]	Illumina [6627481] (imputed)	N
1986	chr4	183637656	183637657	rs35751669	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	4q35.1	ODZ3	rs35751669-G	NR	1E-6		1.0604454	[1.04-1.08]	Illumina [6627481] (imputed)	N
1986	chr4	183687788	183687789	rs10017238	22952603	Hart AB	2012-08-28	PLoS One	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 10 individuals	NA	4q35.1	ODZ3	rs10017238-?	NR	7E-6	(SF4)			Affymetrix [5476100] (imputed)	N
1986	chr4	183719750	183719751	rs55993110	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	4q35.1	Intergenic	rs55993110-C	0.1712	2E-14	(MTAG)	0.0134	[0.0099-0.0169] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1986	chr4	183724004	183724005	rs1128956	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	4q35.1		rs1128956-T	0.8251	5E-14		0.014	[0.01-0.018] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1986	chr4	183724842	183724843	rs28373063	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	4q35.1	Intergenic	rs28373063-C	0.1785	1E-8	(MTAG)	0.0123	[0.008-0.0166] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1986	chr4	183726056	183726057	rs62336287	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	4q35.1	NR	rs62336287-C	0.0745527	2E-9		0.08053724	[0.054-0.107] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1986	chr4	183745320	183745321	rs7660520	26301688	Li YR	2015-08-24	Nat Med	Meta-analysis of shared genetic architecture across ten pediatric autoimmune diseases.	Pediatric autoimmune diseases	97 European ancestry thyroiditis cases, 107 European ancestry ankylosing spondylitis cases, 100 European ancestry psoriasis cases, 173 European ancestry celiac disease cases, 254 European ancestry systemic lupus erythematosus cases, 308 European ancestry common variable inmunodeficiency cases, 865 European ancestry ulcerative colitis cases, 1,086 European ancestry Type 1 diabetes cases, 1,123  European ancestry juvenile idiopathic arthritis cases, 1,922  European ancestry Crohn's disease cases, 10,718 European ancestry controls	NA	4q35.1	TNM3	rs7660520-A	0.26	8E-11				Illumina [7347414] (imputed)	N
1986	chr4	183748002	183748003	rs66754540	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 1, breadth of lateral portion of upper face)	2,187 European ancestry individuals	NA	4q35.1	NR	rs66754540-A	0.109	3E-6		0.2291	[0.13-0.33] unit increase	Illumina [10677593] (imputed)	N
1986	chr4	183751028	183751029	rs4862110	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interferon gamma-induced protein 10 levels	3,685 Finnish ancestry individuals	NA	4q35.1	NR	rs4862110-C		5E-6		0.1458	[0.083-0.209] SD units increase	NR [10700000] (imputed)	N
1986	chr4	183751028	183751029	rs4862110	23740775	Xie G	2013-09-01	Arthritis Rheum	Association of granulomatosis with polyangiitis (Wegener's) with HLA-DPB1*04 and SEMA6A gene variants: evidence from genome-wide analysis.	Wegener's granulomatosis	459 European ancestry cases, 1,503 European ancestry controls	291 European ancestry cases, 317 European ancestry controls	4q35.1	DCTD	rs4862110-C	0.174	2E-6		1.44	[1.24-1.67]	Illumina [287802]	N
1986	chr4	183756380	183756381	rs78262712	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q35.1	NR	rs78262712-A	0.01916	3E-8	(AGXT2)	0.1485	NR unit increase	Illumina [1671387] (imputed)	N
1987	chr4	183821661	183821662	rs13114435	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	4q35.1	DCTD	rs13114435-G	0.127	2E-6	(Diet fat )	0.03	[NR] %energy increase	Illumina [899892]	N
1988	chr4	183916673	183916674	rs4069861	34130359	Curtis SW	2021-06-15	Genet Epidemiol	FAT4 identified as a potential modifier of orofacial cleft laterality.	Left unilateral cleft lip and palate	98 Asian ancestry cases, 199 European ancestry cases, 340 Hispanic cases, 1 case, 1,626 controls	NA	4q35.1	NR	rs4069861-?		6E-7		0.63	[0.53-0.76]	Illumina [539473] (imputed)	N
1988	chr4	183933385	183933386	rs17333948	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Neuroticism	170,911 European ancestry individuals	NA	4q35.1	NR	rs17333948-T	0.026	9E-7		0.061451595	[0.037-0.086] unit decrease	Affymetrix [up to 6544775] (imputed)	N
1990	chr4	184171186	184171187	rs10020261	30276832	Edwards AC	2018-10-01	Alcohol Clin Exp Res	Meta-Analysis of Genetic Influences on Initial Alcohol Sensitivity.	Initial alcohol sensitivity	6,039 European ancestry individuals, 892 African ancestry individuals, 408 American ancestry individuals	NA	4q35.1	WWC2	rs10020261-?	NR	3E-6				Affymetrix, Illumina [15642250] (imputed)	N
1990	chr4	184187310	184187311	rs6854052	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	4q35.1		rs6854052-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1990	chr4	184191806	184191807	rs35075899	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	4q35.1	NR	rs35075899-A	NR	2E-9		0.0153	[0.01-0.02] unit increase	Affymetrix [9000000] (imputed)	N
1990	chr4	184196253	184196254	rs10015974	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	4q35.1		rs10015974-G	NR	8E-24		0.0141	[0.011-0.017] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1990	chr4	184196253	184196254	rs10015974	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	4q35.1	WWC2	rs10015974-A	0.2407	1E-15		0.0177	[0.013-0.022] unit decrease	Affymetrix [18391927] (imputed)	N
1990	chr4	184196253	184196254	rs10015974	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	4q35.1	WWC2	rs10015974-A	0.243534	1E-11		0.0146665	[0.01-0.019] unit increase	NR [13737936] (imputed)	N
1990	chr4	184196253	184196254	rs10015974	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	4q35.1		rs10015974-?	NR	3E-35				NR [~ 8900000] (imputed)	N
1990	chr4	184200937	184200938	rs12643353	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q35.1	NR	rs12643353-C	0.0611224	5E-10				Affymetrix, Illumina [24332387] (imputed)	N
1990	chr4	184204227	184204228	rs3814420	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	4q35.1	WWC2	rs3814420-T	0.94	1E-8		5.71	z-score increase	Affymetrix [4314223] (imputed)	N
1990	chr4	184209610	184209611	rs11939899	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	4q35.1		rs11939899-C	NR	8E-10		0.012	[0.0083-0.0157] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
1990	chr4	184211029	184211030	rs3828559	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	4q35.1		rs3828559-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1990	chr4	184212219	184212220	rs907366	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	4q35.1		rs907366-?	NR	8E-12		0.0156106	[0.011-0.02] unit increase	Affymetrix [20259828] (imputed)	N
1990	chr4	184215674	184215675	rs955748	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	4q35.1	WWC2	rs955748-A	0.24	4E-8		0.023	[NR] unit decrease	Affymetrix, Illumina [2834208] (imputed)	N
1990	chr4	184225294	184225295	rs72703409	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	4q35.1	WWC2	rs72703409-C	0.0686	5E-7		0.0681	[0.042-0.095] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1990	chr4	184242958	184242959	rs6839940	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	4q35.1	NR	rs6839940-G	NR	2E-9		0.0159	[0.011-0.021] unit increase	Affymetrix [9000000] (imputed)	N
1990	chr4	184250311	184250312	rs7694290	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	4q35.1		rs7694290-T	NR	3E-10		0.0131	[0.009-0.0172] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
1990	chr4	184278130	184278131	rs17074636	23263486	Kottgen A	2012-12-23	Nat Genet	Genome-wide association analyses identify 18 new loci associated with serum urate concentrations.	Gout	2,115 European ancestry cases, 67,259 European ancestry controls	1,036 European ancestry cases	4q35.1	NR	rs17074636-T	0.9862	7E-7		0.7091	[0.43-0.99] unit decrease	Affymetrix, Illumina [2538056] (imputed)	N
1991	chr4	184302048	184302049	rs17293543	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	4q35.1	CDKN2AIP	rs17293543-?	NR	8E-6	(DAG 36:1)	0.15033792	[0.084-0.217] unit increase	Affymetrix [at least 2500000] (imputed)	N
1991	chr4	184353137	184353138	rs4241767	30319691	Liu C	2018-09-24	Front Genet	Genome-Wide Association and Mechanistic Studies Indicate That Immune Response Contributes to Alzheimer's Disease Development.	Cerebrospinal fluid AB1-42 levels	235 early mild cognitive impairment cases, 249 late mild cognitive impairment cases, 47 Alzheimer's disease cases, 281 controls.	NA	4q35.1	Intergenic	rs4241767-?		9E-6		152.1046	[NR] unit decrease	Illumina [575353]	N
1991	chr4	184371615	184371616	rs191558346	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia	11,197 European ancestry low myopic cases, 21,416 European ancestry emmetropia controls	NA	4q35.1	NR	rs191558346-?	NR	3E-6		0.77603	[0.45-1.1] unit increase	NR [13958389] (imputed)	N
1992	chr4	184524109	184524110	rs60660665	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels	774 Chinese ancestry individuals	NA	4q35.1		rs60660665-?	NR	2E-6		0.22	[0.13-0.31] unit decrease	Affymetrix [NR] (imputed)	N
1993	chr4	184609372	184609373	rs10018951	29494758	Liu L	2018-03-01	Br J Dermatol	Genome-wide association study identifies three novel susceptibility loci for systemic lupus erythematosus in Han Chinese.	Systemic lupus erythematosus	1,047 Han Chinese ancestry cases, 1,205 Han Chinese ancestry controls	3,509 Han Chinese ancestry cases, 8,246 Han Chinese ancestry controls		TRAPPC11	rs10018951-T	0.1555	1E-14		1.31	[NR]	NR [at least 493955] (imputed)	N
1993	chr4	184612552	184612553	rs67383011	32912094	Jaworek T	2020-09-11	Stroke	Exome Array Analysis of Early-Onset Ischemic Stroke.	Early-onset ischemic stroke	330 African American cases, 393 European ancestry cases, 298 African American controls, 428 European ancestry controls	NA	4q35.1	TRAPC11	rs67383011-?	0.95	5E-6		2.0		Illumina [243497]	N
1994	chr4	184691563	184691564	rs191705561	31095341	Kerns SL	2019-05-16	J Natl Cancer Inst	Radiogenomics Consortium Genome-Wide Association Study Meta-analysis of Late Toxicity after Prostate Cancer Radiotherapy.	Toxicity response to radiotherapy in prostate cancer (increased urinary frequency) (time to event)	3,782 European ancestry individuals	NA	4q35.1	NR	rs191705561-?	0.01	4E-8		3.05	[2.05-4.53]	Affymetrix, Illumina [~ 6000000] (imputed)	N
1994	chr4	184728681	184728682	rs7659026	33527407	Truong T	2021-02-02	Int J Cancer	Multiethnic genome-wide association study of differentiated thyroid cancer in the EPITHYR consortium.	Differentiated thyroid cancer	1,554 European ancestry cases, 1,973 European ancestry controls, 301 Oceanian ancestry cases, 348 Oceanian ancestry controls	NA	4q35.1	NR	rs7659026-C	0.6	6E-6				Illumina [6479975] (imputed)	N
1994	chr4	184780331	184780332	rs892837	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris color (b* coordinate)	329 South Asian ancestry individuals		4q35.1	STOX2	rs892837-C	0.432	7E-6		0.366	[0.21-0.52] unit decrease	Illumina [640625] (imputed)	N
1994	chr4	184787509	184787510	rs11734970	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	4q35.1	Intergenic	rs11734970-T	0.4395	8E-9	(MTAG)	0.0133	[0.0088-0.0178] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1994	chr4	184790300	184790301	rs11729441	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	4q35.1	Intergenic	rs11729441-A	0.5822	9E-12	(MTAG)	0.0114	[0.0081-0.0147] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1994	chr4	184790300	184790301	rs11729441	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	4q35.1	Intergenic	rs11729441-A	0.5822	2E-8		0.0128	[0.0083-0.0173] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1994	chr4	184791915	184791916	rs7693161	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	4q35.1	Intergenic	rs7693161-A	0.595	5E-11	(MTAG)	0.0088	[0.0063-0.0113] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1994	chr4	184801156	184801157	rs7695698	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	4q35.1	STOX2	rs7695698-T	0.7045	2E-8		0.0864	[0.056-0.117] unit increase	Affymetrix [~ 11900000] (imputed)	N
1995	chr4	184823630	184823631	rs6815422	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	4q35.1	Intergenic	rs6815422-T	0.6199	4E-9	(MTAG)	0.0109	[0.0074-0.0144] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1995	chr4	184834910	184834911	rs11132213	29346644	Yan Q	2018-01-15	Hum Mol Genet	Genome-wide Analysis of Disease Progression in Age-related Macular Degeneration.	Disease progression in age-related macular degeneration	1,105 progressed eyes and 3,912 non-progressed eyes from 2,721 European ancestry individuals	NA	4q35.1	STOX2	rs11132213-A	0.57	9E-6		1.37		Illumina [8974355] (imputed)	N
1995	chr4	184921298	184921299	rs12498735	23400010	Del-Aguila JL	2013-02-12	Pharmacogenomics J	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NA	4q35.1	STOX2	rs12498735-T	0.25	8E-6	(AA-triglyceride response)	19.13	[10.74-27.52] mg/dL increase	Affymetrix, Illumina [> 2000000] (imputed)	N
1995	chr4	184932934	184932935	rs66511946	33979322	Currant H	2021-05-12	PLoS Genet	Genetic variation affects morphological retinal phenotypes extracted from UK Biobank optical coherence tomography images.	Retinal nerve fibre layer thickness or ganglion cell inner plexiform layer thickness (MTAG)	31,434 European ancestry individuals	NA	4q35.1	NR	rs66511946-G	0.4	2E-13		0.36	[0.26-0.46] unit decrease	Affymetrix [9231066] (imputed)	N
1995	chr4	184932934	184932935	rs66511946	33979322	Currant H	2021-05-12	PLoS Genet	Genetic variation affects morphological retinal phenotypes extracted from UK Biobank optical coherence tomography images.	Ganglion cell inner plexiform layer (GCIPL) thickness	31,434 European ancestry individuals	NA	4q35.1	NR	rs66511946-G	0.4	2E-13		0.36	[0.26-0.46] unit decrease	Affymetrix [9231066] (imputed)	N
1995	chr4	184942347	184942348	rs2309957	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	4q35.1	STOX2	rs2309957-?	NR	1E-14		0.5362	[0.4-0.67] unit increase	Affymetrix [11100000] (imputed)	N
1996	chr4	184973305	184973306	rs7666515	30279459	van der Meer D	2018-10-02	Mol Psychiatry	Brain scans from 21,297 individuals reveal the genetic architecture of hippocampal subfield volumes.	Hippocampal tail volume	21,297 European ancestry individuals	NA	4q35.1		rs7666515-C	NR	6E-9		7.3	NR mm3 decrease	Affymetrix, Illumina [NR] (imputed)	N
1996	chr4	185005627	185005628	rs112538845	27622933	Li QS	2016-09-13	Transl Psychiatry	Analysis of 23andMe antidepressant efficacy survey data: implication of circadian rhythm and neuroplasticity in bupropion response.	Response to bupropion and depression	2,675 European ancestry responder cases, 191,986 European ancestry healthy controls	NA	4q35.1	STOX2, ENPP6	rs112538845-?		6E-7		1.637	[1.366-1.961]	Illumina [~ 12000000] (imputed)	N
1996	chr4	185007392	185007393	rs4862307	24159190	Seppala I	2013-10-24	Eur Heart J	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Serum dimethylarginine levels (asymmetric/symetric ratio)	5110 European ancestry individuals	NA	4q35.1	NR	rs4862307-T	0.349	6E-6		0.098	[0.055-0.141] unit decrease	Affymetrix, Illumina [10085758] (imputed)	N
1996	chr4	185012400	185012401	rs148434007	33692975	Buda P	2021-02-22	Front Pediatr	Association Between rs12037447, rs146732504, rs151078858, rs55723436, and rs6094136 Polymorphisms and Kawasaki Disease in the Population of Polish Children.	Kawasaki disease	119 European ancestry cases, 6,071 European ancestry controls	NA	4q35.1	ENPP6	rs148434007-T	0.001153	2E-6		11.15	3.183-39.07	Illumina [164395]	N
1996	chr4	185059984	185059985	rs79150573	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q35.1	NR	rs79150573-G	0.01568	2E-8	(FERMT2)	0.1027	NR unit increase	Illumina [1671387] (imputed)	N
1996	chr4	185065037	185065037	rs1217831316	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q35.1	NR	rs1217831316-A	0.01568	1E-8	(FERMT2)	0.1017	NR unit increase	Illumina [1671387] (imputed)	N
1996	chr4	185065294	185065295	rs11132226	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Diastolic blood pressure (long-term average)	13,137 European ancestry individuals	2,451 European ancestry individuals	4q35.1	NR	rs11132226-A	0.8513	5E-8		1.3659	[0.87-1.86] mmHg decrease	Affymetrix, Illumina [NR] (imputed)	N
1996	chr4	185067203	185067204	rs13104911	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	4q35.1		rs13104911-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1997	chr4	185076641	185076642	rs9994623	34112972	DeMichele-Sweet MAA	2021-06-10	Mol Psychiatry	Genome-wide association identifies the first risk loci for psychosis in Alzheimer disease.	Psychosis in Alzheimer's disease	4,551 European ancestry cases, 5,796 European ancestry controls, 894 African American or unknown ancestry cases, 1,076 African American or unknown ancestry controls	NA	4q35.1		rs9994623-C	NR	1E-8		1.16	[1.1-1.22]	Illumina [7105229] (imputed)	N
1997	chr4	185083205	185083206	rs72699704	29520036	Stein MB	2018-03-08	Mol Psychiatry	Genome-wide analysis of insomnia disorder.	Insomnia	2,297 European American cases, 334 African American cases, 606 Latino American cases, 9,176 European American controls, 2,345 African American controls, 2,893 Latino American controls	NA	4q35.1	ENPP6	rs72699704-A	NR	2E-7	(Hispanic)	1.67		Illumina [at least 360704] (imputed)	N
1997	chr4	185121732	185121733	rs17623373	26379185	Garcia-Etxebarria K	2015-09-17	PLoS One	No Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity.	Severe influenza A (H1N1) infection	49 European ancestry severe cases, 549 European ancestry population controls	NA	4q35.1	ENPP6	rs17623373-?	0.009259	4E-10		11.57	[4.433-30.18]	Affymetrix [547296]	N
1997	chr4	185159433	185159434	rs62341639	27576016	Zhao B	2016-08-30	Am J Respir Crit Care Med	A Genome-Wide Association Study to Identify Single-Nucleotide Polymorphisms for Acute Kidney Injury.	Acute kidney injury in critical illness	709 European ancestry cases, 619  European ancestry controls	206  European ancestry cases, 1,406  European ancestry controls	4q35.1	IRF2	rs62341639-?	NR	2E-7		1.5625	[1.32-1.82]	Illumina [9076120] (imputed)	N
1997	chr4	185171361	185171362	rs7695597	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	4q35.1	RP11-162O12.1, ENPP6, IRF2, STOX2	rs7695597-G	NR	8E-6	(sleep efficiency, weekdays)	1.733	[0.97-2.5] unit decrease	Affymetrix [7141204] (imputed)	N
1997	chr4	185179086	185179087	rs13137158	30172743	Liang X	2018-08-30	Bone	Assessing the genetic correlations between early growth parameters and bone mineral density: A polygenic risk score analysis.	Femoral neck bone mineral density	2,286 European ancestry individuals	NA	4q35.1	ENPP6	rs13137158-?	NR	3E-6				Affymetrix [753382]	N
1997	chr4	185198525	185198526	rs12647456	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Recurrent major depressive disorder	3,833 European ancestry female cases, 5,280 European ancestry female controls, 1,481 European ancestry male cases, 4,869  European ancestry male controls	NA	4q35.1	ENPP6, LINC02363	rs12647456-A	0.9399	5E-6	(male)	0.2817	[0.16-0.4] unit decrease	NR [NR] (imputed)	N
1998	chr4	185205130	185205131	rs3796696	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or recurrent major depressive disorder x sex interaction	31,567 European ancestry schizophrenia cases,19,924 European ancestry bipolar disorder cases, 5,314 European ancestry recurrent major depressive disorder cases, 78,190 European ancestry controls, 1,836 East Asian ancestry schizophrenia cases, 3,383 East Asian ancestry controls	NA	4q35.1	ENPP6, LINC02363	rs3796696-A	0.0725	6E-6		0.1958	[0.11-0.28] unit decrease	NR [NR] (imputed)	N
1998	chr4	185205130	185205131	rs3796696	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or recurrent major depressive disorder	11,361 European ancestry schizophrenia female cases, 20,206 European ancestry schizophrenia male cases, 11,897 European ancestry bipolar disorder female cases, 8,027 European ancestry bipolar disorder male cases, 3,833 European ancestry recurrent major depressive disorder female cases, 1,481 recurrent major depressive disorder male cases, 38,937 European ancestry female controls, 29,714 European ancestry male controls, 686 East Asian ancestry schizophrenia female cases, 1,907 East Asian ancestry female controls, 1,150 East Asian ancestry schizophrenia male cases, 1,476 East Asian ancestry male controls	NA	4q35.1	ENPP6, LINC02363	rs3796696-A	0.0725	7E-6	(male)	0.1393	[0.079-0.2] unit increase	NR [NR] (imputed)	N
1998	chr4	185208616	185208617	rs28403213	30942860	Shin J	2019-04-03	J Clin Endocrinol Metab	Novel genetic locus of visceral fat and systemic inflammation.	Visceral fat	1589 French-Canadian ancestry individuals	NA	4q35.1	Intergenic	rs28403213-G	NR	6E-6	(adjusted for total body fat)	0.195	[0.11-0.28] unit decrease	Illumina [8511049] (imputed)	N
1998	chr4	185217147	185217148	rs6844506	27490719	Bacelis J	2016-08-04	PLoS One	Literature-Informed Analysis of a Genome-Wide Association Study of Gestational Age in Norwegian Women and Children Suggests Involvement of Inflammatory Pathways.	Gestational age at birth in premature rupture of membrane-initiated deliveries (child effect)	225 Norwegian ancestry children	NA	4q35.1	NR	rs6844506-A		5E-6				NR [525577]	N
1998	chr4	185244317	185244318	rs793885	33002439	Jin G	2020-10-01	Lancet Oncol	Genetic risk, incident gastric cancer, and healthy lifestyle: a meta-analysis of genome-wide association studies and prospective cohort study.	Gastric cancer	10,254 Han Chinese ancestry cases, 10,914 Han Chinese ancestry controls	NA	4q35.1	NR	rs793885-T	0.41	2E-6		0.9	NR	Affymetrix, Illumina [6957974] (imputed)	N
1998	chr4	185254197	185254198	rs75859548	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (hospitalized covid vs population)	613 European ancestry cases, 680,416 European ancestry controls, 140 Hispanic or Latin American cases, 94,327 Hispanic or Latin American controls, 49 Black or African American cases, 22,410 Black or African American controls	NA	4q35.1		rs75859548-?	NR	3E-7		0.6404223	[0.4-0.89] unit increase	Illumina [9875426] (imputed)	N
1998	chr4	185254771	185254772	rs57214277	28165464	Law PJ	2017-02-06	Nat Commun	Genome-wide association analysis implicates dysregulation of immunity genes in chronic lymphocytic leukaemia.	Chronic lymphocytic leukemia	4,478 European ancestry cases and 13,213 European ancestry controls.	1,722 European ancestry cases and 4,385 European ancestry controls.	4q35.1	LOC728175, IRF2	rs57214277-T	0.41	4E-8		1.13	[1.08-1.18]	Affymetrix, Illumina [> 10000000] (imputed)	N
1998	chr4	185272615	185272616	rs1087298	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Unilateral cleft lip and palate	205 Asian ancestry cases, 315 European ancestry cases, 692 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	4q35.1	NR	rs1087298-?	NR	5E-6		0.66	[0.62-0.69]	Illumina [539000] (imputed)	N
1998	chr4	185302901	185302902	rs12644686	34012112	Chiou J	2021-05-19	Nature	Interpreting type 1 diabetes risk with genetics and single-cell epigenomics.	Type 1 diabetes	18,942 European ancestry cases, 501,638 European ancestry controls	NA	4q35.1	IRF2	rs12644686-G	0.193778	2E-8		0.10774961	[0.07-0.146] unit decrease	Affymetrix, Illumina [62116689] (imputed)	N
1998	chr4	185305365	185305366	rs4629495	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antithrombotic agents)	67,653 European ancestry cases, 85,986 European ancestry controls, 54,220 East Asian ancestry cases, 124,506 East Asian ancestry controls	NA	4q35.1		rs4629495-T	NR	1E-9		0.0547	[0.037-0.072] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1998	chr4	185328972	185328973	rs17488073	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Hippocampal volume in Alzheimer's disease dementia	190 European ancestry Alzheimer's disease dementia cases	NA	4q35.1	IRF2, RPL6P16, CASP3	rs17488073-G	0.16	2E-7		0.83	[0.54-1.12] unit increase	Illumina [8437147] (imputed)	N
1999	chr4	185365539	185365540	rs890195	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	4q35.1	NR	rs890195-?	NR	2E-11				Affymetrix [NR]	N
1999	chr4	185373133	185373134	rs3775578	30420678	Tasa T	2018-11-12	Eur J Hum Genet	Genetic variation in the Estonian population: pharmacogenomics study of adverse drug effects using electronic health records.	Adverse response to drug	16,226 European ancestry individuals	NA	4q35.1	IRF2	rs3775578-C	0.11	2E-7	(Coxibs [M01AH])	1.93		Illumina [16500000] (imputed)	N
1999	chr4	185377221	185377222	rs11721999	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	4q35.1	NR	rs11721999-G	0.165206	1E-10		0.00677111	[0.0045-0.009] unit increase	Affymetrix [16582909] (imputed)	N
1999	chr4	185377221	185377222	rs11721999	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	4q35.1	NR	rs11721999-G	0.165206	2E-7		0.00621161	[0.0037-0.0087] unit increase	Affymetrix [16582965] (imputed)	N
1999	chr4	185436254	185436255	rs6849842	33407418	Jonsson A	2021-01-06	BMC Med Genomics	Genome-wide association study of circulating levels of glucagon during an oral glucose tolerance test.	Glucagon levels in response to oral glucose tolerance test (30 minutes)	553 European ancestry individuals, 1,346 individuals	NA	4q35.1	NR	rs6849842-A	0.1841	9E-6		0.2211	[0.12-0.32] unit increase	Illumina [NR] (imputed)	N
1999	chr4	185443626	185443627	rs116910459	31609978	Huang L	2019-10-14	PLoS Genet	Genetic factors define CPO and CLO subtypes of nonsyndromicorofacial cleft.	Nonsyndromic cleft lip	945 Southern Han Chinese ancestry cases, 5,048 Southern Han Chinese ancestry controls	1,273 Han Chinese ancestry cases, 5,097 Han Chinese ancestry controls	4q35.1	IRF2, LINC02427	rs116910459-C	0.104	4E-8		1.32	NR	Illumina [at least 870261] (imputed)	N
2000	chr4	185535689	185535690	rs1114071	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	4q35.1		rs1114071-A	0.99961	6E-6		0.77372	[0.44-1.11] unit increase	Affymetrix [15580782] (imputed)	N
2000	chr4	185568112	185568113	rs2720378	33772158	Hoggart C	2021-03-26	Eur J Hum Genet	Identification of novel locus associated with coronary artery aneurysms and validation of loci for susceptibility to Kawasaki disease.	Kawasaki disease	400 European ancestry cases, 6,101 European ancestry controls	346 European ancestry cases, 1,609 European ancestry controls	4q35.1	CASP3	rs2720378-G	NR	1E-10		0.741	[0.676-0.812]	Illumina [5784964] (imputed)	N
2000	chr4	185568112	185568113	rs2720378	33106546	Johnson TA	2020-10-26	J Hum Genet	Association of an IGHV3-66 gene variant with Kawasaki disease.	Kawasaki disease	1,276 East Asian ancestry cases, 5,086 East Asian ancestry controls	2,152 East Asian ancestry cases, 2,751 East Asian ancestry controls	4q35.1	CASP3	rs2720378-G	NR	2E-8		0.83	[0.78-0.89]	Affymetrix, Illumina [6265045] (imputed)	N
2000	chr4	185588044	185588045	rs870825	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	4q35.1	PRIMPOL, CASP3	rs870825-G	0.1567839	2E-11	(EA, Caspase-3)	0.3955	[0.28-0.51] unit decrease	Affymetrix [509946]	N
2001	chr4	185631997	185631998	rs7683537	19838195	Gateva V	2009-11-01	Nat Genet	A large-scale replication study identifies TNIP1, PRDM1, JAZF1, UHRF1BP1 and IL10 as risk loci for systemic lupus erythematosus.	Systemic lupus erythematosus	1,310 European ancestry cases, 7,859 European ancestry controls	1,963 European ancestry cases, 4,329 European ancestry controls	4q35.1	MLF1IP	rs7683537-T	0.82	8E-7		1.23	[1.14-1.33]	Illumina [~ 2100000] (imputed)	N
2001	chr4	185639168	185639169	rs2130392	22446962	Onouchi Y	2012-03-25	Nat Genet	A genome-wide association study identifies three new risk loci for Kawasaki disease.	Kawasaki disease	428 Japanese ancestry cases, 3,379 Japanese ancestry controls	754 Japanese ancestry cases, 947 Japanese ancestry controls	4q35.1	MLF1IP	rs2130392-A	0.358	3E-8		1.42	[1.23-1.64]	Illumina [463793]	N
2001	chr4	185676682	185676683	rs12644905	30552108	Kawabata Y	2018-12-14	Diabetes	A genome-Wide Association Study Confirming a Strong Effect of HLA and Identifying Variants in CSAD/lnc-ITGB7-1 on Chromosome 12q13.13 Associated with Susceptibility to Fulminant Type 1 Diabetes.	Fulminant type 1 diabetes	257 Japanese ancestry cases, 419 Japanese ancestry controls	NA	4q35.1	ACSL1	rs12644905-C	NR	4E-6		1.91	[1.45-2.52]	Affymetrix [426851] (imputed)	N
2001	chr4	185702689	185702690	rs191540449	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	4q35.1	NR	rs191540449-?	NR	2E-8				Illumina [7760689] (imputed)	N
2001	chr4	185708806	185708807	rs60780116	28566273	Scott RA	2017-05-31	Diabetes	An Expanded Genome-Wide Association Study of Type 2 Diabetes in Europeans.	Type 2 diabetes	up to 26,676 European ancestry cases, up to 132,532 European ancestry controls	14,545 European ancestry cases, 38,994 European ancestry controls	4q35.1	ACSL1	rs60780116-T	0.84	2E-10		1.09	[1.06-1.12]	Affymetrix, Illumina [at least 11579618] (imputed)	N
2001	chr4	185713595	185713595	rs146302237	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	4q35.1		rs146302237-AT	NR	3E-24		0.0349	[0.028-0.042] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
2001	chr4	185713607	185713608	rs72695645	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	4q35.1	NR	rs72695645-G	0.8599	9E-20		0.0611	[0.048-0.074] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
2001	chr4	185714955	185714956	rs7660927	31605138	Avitabile M	2019-09-07	Carcinogenesis	Neural crest-derived tumor neuroblastoma and melanoma share 1p13.2 as susceptibility locus that shows a long-range interaction with the SLC16A1 gene.	Neuroblastoma or malignant cutaneous melanoma	2,101 European ancestry neuroblastoma cases, 12,874 European ancestry malignant cutaneous melanoma cases, 27,405 European ancestry controls	2,039 European ancestry neuroblastoma cases, 508 European ancestry malignant cutaneous melanoma cases, 3,469 European ancestry controls	4q35.1	ACSL1	rs7660927-C	0.82449	5E-6		1.0833954	[1.05-1.12]	NR [NR] (imputed)	N
2001	chr4	185715684	185715685	rs116401167	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	4q35.1		rs116401167-C	NR	7E-18		0.0312	[0.024-0.038] unit decrease	Affymetrix, Illumina [20535873] (imputed)	N
2001	chr4	185716089	185716090	rs55881843	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glucose levels	114,870 European ancestry individuals	NA	4q35.1		rs55881843-G	0.860841	2E-9		0.0354569	[0.024-0.047] unit increase	NR [11722792] (imputed)	N
2001	chr4	185716099	185716100	rs55691245	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	4q35.1	NR	rs55691245-G	0.8671	2E-18		0.0561	[0.044-0.069] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
2001	chr4	185716231	185716232	rs735949	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	4q35.1	ACSL1	rs735949-C	0.141149742372597	2E-11		0.0711	[0.05-0.092] unit decrease	NR [5035015] (imputed)	N
2001	chr4	185717758	185717759	rs58730668	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	4q35.1	ACSL1	rs58730668-T	0.858	1E-13		1.07	[1.05-1.09]	Affymetrix, Illumina [~ 27000000] (imputed)	N
2001	chr4	185726547	185726548	rs4862423	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	200,622 European ancestry individuals	NA	4q35.1	ACSL1	rs4862423-T	0.3964	4E-10		0.0123	[0.0086-0.016] unit increase	Affymetrix, Illumina [34064007] (imputed)	N
2002	chr4	185736643	185736643	rs11430387	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	4q35.1	ACSL1, RP11-701P16.2	rs11430387-TG	0.118268	5E-9		0.02069756	[0.014-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
2002	chr4	185746087	185746088	rs12503643	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Age at menopause	approximately 143,000 European ancestry individuals	NA	4q35.1		rs12503643-?	NR	6E-25				NR [~ 8900000] (imputed)	N
2002	chr4	185748805	185748806	rs6856693	26414677	Day FR	2015-11-01	Nat Genet	Large-scale genomic analyses link reproductive aging to hypothalamic signaling, breast cancer susceptibility and BRCA1-mediated DNA repair.	Menopause (age at onset)	up to 69,626 European ancestry women	NA	4q35.1	ASCL1, MLF1IP	rs6856693-A	0.58	1E-16		0.16	[0.12-0.2] years decrease	Affymetrix, Illumina [~ 2600000] (imputed)	N
2002	chr4	185763309	185763310	rs34237618	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	4q35.1	NR	rs34237618-T	0.825137	7E-20		0.023248	[0.018-0.028] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
2002	chr4	185772232	185772244	rs145931056	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	4q35.1	MIR3945	rs145931056-T	0.209316	3E-11		0.018657802	[0.013-0.024] unit increase	Affymetrix [93095623] (imputed)	N
2002	chr4	185788094	185788095	rs7665170	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	4q35.1		rs7665170-T	0.455816	2E-14		0.017416114	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
2002	chr4	185788898	185788899	rs62340877	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	4q35.1		rs62340877-A	0.200458	2E-14		0.02152902	[0.016-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
2002	chr4	185788898	185788899	rs62340877	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q35.1	NR	rs62340877-G	0.806511	6E-18				Affymetrix, Illumina [17210439] (imputed)	N
2002	chr4	185789994	185789995	rs4862451	32824824	Diaz-Pena R	2020-08-18	J Pers Med	Amerindian Ancestry Influences Genetic Susceptibility to Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease	214 Chilean cases, 193 Chilean controls	NA	4q35.1	intergenic	rs4862451-G	NR	7E-6		2.47	NR	Illumina [754159] (imputed)	N
2002	chr4	185804319	185804320	rs11723502	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	4q35.1	NR	rs11723502-T	NR	9E-6	(GEE model)	0.51405	[0.29-0.74] unit decrease	NR [NR] (imputed)	N
2002	chr4	185809787	185809788	rs7672676	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	4q35.1	NR	rs7672676-?	NR	7E-10				Affymetrix [NR]	N
2003	chr4	185874622	185874623	rs12502026	34624637	Zainul Abidin FN	2021-09-21	Neuroimage Clin	Glucose hypometabolism in the Auditory Pathway in Age Related Hearing Loss in the ADNI cohort.	Age related hearing loss-related regional glucose metabolism (Bilateral Heschl's gyrus)	228 European ancestry cases, 587 European ancestry controls	NA	4q35.1		rs12502026-?	NR	9E-6		0.237	[0.14-0.34] unit decrease	Illumina [5082878] (imputed)	N
2003	chr4	185879729	185879730	rs4276324	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	4q35.1	MIR4455, HELT, MIR3945, ACSL1	rs4276324-G	NR	6E-6	(sleep duration)	0.3548	[0.2-0.51] unit increase	Affymetrix [7141204] (imputed)	N
2003	chr4	185886747	185886748	rs71638129	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	4q35.1	Intergenic	rs71638129-G	NR	2E-6		0.0207213	[0.012-0.029] unit decrease	Illumina [13520550] (imputed)	N
2003	chr4	185973096	185973097	rs4862495	29489655	Liu X	2018-03-01	Medicine (Baltimore)	Genome-wide association study of maternal genetic effects and parent-of-origin effects on food allergy.	Food allergy (parent-of-origin effect)	482 European ancestry trios, 19 European ancestry father-child pairs, 59 European ancestry mother-child pairs, 28 European ancestry affected children	NA	4q35.1	LOC101928877	rs4862495-?	NR	1E-6				Illumina [NR]	N
2004	chr4	186006338	186006339	rs57279992	32724131	Li QS	2020-07-28	Sci Rep	Genome-wide association study and polygenic risk score analysis of esketamine treatment response.	Response to esketamine (remission) in treatment resistant depression	255 European ancestry remitters, 272 European ancestry non-remitters	NA	4q35.1	NR	rs57279992-?		6E-6		0.4654	[0.13-0.8]	NR [NR] (imputed)	N
2004	chr4	186063044	186063045	rs79116769	30787463	Escala-Garcia M	2019-02-21	Br J Cancer	Genome-wide association study of germline variants and breast cancer-specific mortality.	Breast cancer specific mortality in estrogen receptor positive breast cancer	4,116 European ancestry cases, 60,055 European ancestry controls	NA	4q35.1	NR	rs79116769-?	NR	6E-7		0.7772595	[0.70-0.86]	Affymetrix, Illumina [~ 10400000] (imputed)	N
2005	chr4	186164367	186164368	rs35745736	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	4q35.1		rs35745736-?	NR	8E-8				NR [~ 8900000] (imputed)	N
2006	chr4	186272720	186272721	rs61731371	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	4q35.1	NR	rs61731371-?	NR	3E-6	(AA)	1.4609	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
2006	chr4	186272720	186272721	rs61731371	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	4q35.1	NR	rs61731371-?	NR	5E-7	(AA)	1.4202	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
2006	chr4	186320905	186320906	rs4317244	33069728	Pu W	2020-10-15	J Invest Dermatol	Exome-wide association analysis suggests LRP2BP as a susceptibility gene for endothelial injury in systemic sclerosis in Han Chinese population.	Systemic sclerosis	527 Han Chinese ancestry cases, 5,024 Han Chinese ancestry controls	479 Han Chinese ancestry cases, 1,096 Han Chinese ancestry controls	4q35.1	LRP2BP	rs4317244-G	0.1199	4E-8		1.53	[1.31-1.79]	Illumina [84228]	N
2006	chr4	186334639	186334640	rs77965951	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	4q35.1	NR	rs77965951-C	0.064	2E-6	(IFNgamma_CXCL9_of_Monocytes)			Illumina [5084123] (imputed)	N
2007	chr4	186418064	186418065	rs11727025	32690583	Cheng B	2020-07-20	G3 (Bethesda)	Genome-Wide Association Analysis Identified ANXA1 Associated with Shoulder Impingement Syndrome in UK Biobank Samples.	Shoulder impingement syndrome	7,252 European ancestry individuals	NA	4q35.1		rs11727025-G	NR	7E-6		1.282	[1.17-1.39] unit increase	Affymetrix [825927] (imputed)	N
2007	chr4	186429973	186429974	rs1840	32844198	Dumitrescu L	2020-08-01	Brain	Genetic variants and functional pathways associated with resilience to Alzheimer's disease.	Residual cognitive resilience	3,820 European ancestry cognitively unimpaired individuals	NA	4q35.1	NR	rs1840-?	0.142	2E-6		0.161107	NR unit increase	Affymetrix, Illumina [4840740] (imputed)	N
2007	chr4	186429973	186429974	rs1840	32844198	Dumitrescu L	2020-08-01	Brain	Genetic variants and functional pathways associated with resilience to Alzheimer's disease.	Combined resilience (covariance of educational attainment with residual cognitive resilience)	3,820 European ancestry cognitively unimpaired individuals	NA	4q35.1	NR	rs1840-?	0.142	2E-6		0.075377	NR unit increase	Affymetrix, Illumina [4840740] (imputed)	N
2008	chr4	186532424	186532425	rs115349299	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Smoking x traumatic event in childhood (sexually molested) interaction	127,766 European ancestry individuals	NA	4q35.1		rs115349299-?	NR	2E-8		1.3142	[0.86-1.77] unit increase	Affymetrix [NR] (imputed)	N
2008	chr4	186542906	186542907	rs57490377	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Ovarian cancer	647 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	4q35.1	Intergenic	rs57490377-?		9E-6		2.3	[1.59-3.32]	Illumina [7645193] (imputed)	N
2008	chr4	186575287	186575288	rs6848934	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs non-severe)	86 Finnish ancestry male severe erosion cases, 50 Finnish ancestry female severe erosion cases, 817 Finnish ancestry male non-severe erosion controls, 991 Finnish ancestry female non-severe erosion controls	NA	4q35.1	NR	rs6848934-?	NR	6E-6				Illumina [NR] (imputed)	N
2008	chr4	186580061	186580062	rs35901985	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	4q35.1	NR	rs35901985-G	0.1759	2E-8		0.0352	[0.023-0.047] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
2008	chr4	186580061	186580062	rs35901985	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	4q35.1	NR	rs35901985-G	0.1853	3E-10		0.0332	[0.023-0.044] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
2008	chr4	186582257	186582259	rs71670177	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	4q35.1		rs71670177-C	NR	4E-8		0.0162	[0.01-0.022] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
2008	chr4	186602209	186602210	rs4862562	25896417	Nakada TA	2015-04-17	J Innate Immun	VPS13D Gene Variant Is Associated with Altered IL-6 Production and Mortality in Septic Shock.	Cytokine-stimulated IL-6 production	60 European ancestry lymphoblastoid cell lines	NA	4q35.1	SORBS2	rs4862562-C	0.076	3E-8				Illumina [2300000]	N
2008	chr4	186602209	186602210	rs4862562	25896417	Nakada TA	2015-04-17	J Innate Immun	VPS13D Gene Variant Is Associated with Altered IL-6 Production and Mortality in Septic Shock.	Cytokine and corticosteroid-stimulated IL-6 production	60 European ancestry lymphoblastoid cell lines	NA	4q35.1	SORBS2	rs4862562-C	0.076	9E-10				Illumina [2300000]	N
2008	chr4	186607513	186607514	rs4466086	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	4q35.1	NR	rs4466086-A	NR	2E-9		0.0147	[0.01-0.0194] unit increase	Affymetrix [9000000] (imputed)	N
2008	chr4	186612674	186612675	rs4376189	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue/subcutaneous adipose tissue ratio	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	4q35.1	SORBS2	rs4376189-A	0.90	2E-6	(overall)			Affymetrix, Illumina [2500000] (imputed)	N
2008	chr4	186637895	186637896	rs12644930	33824429	Fjukstad KK	2021-04-06	Pharmacogenomics J	Genetic variants associated with cardiometabolic abnormalities during treatment with selective serotonin reuptake inhibitors: a genome-wide association study.	Triglyceride levels x SSRI levels (escitalopram or citalopram) interaction in schizophrenia or bipolar disorder	181 European ancestry individuals	NA	4q35.1	SORBS2	rs12644930-T	NR	8E-6		10.67	[6.73-14.61] unit increase	Illumina [NR] (imputed)	N
2009	chr4	186677518	186677519	rs10024805	30196971	Bray MJ	2018-09-01	Fertil Steril	Transethnic and race-stratified genome-wide association study of fibroid characteristics in African American and European American women.	Uterine fibroid size (maximum volume)	1,048 African American or European ancestry female individuals	NA	4q35.1	SORBS2	rs10024805-T	0.33	9E-8		0.19	[0.12-0.26] unit increase	Affymetrix [up to 9597202] (imputed)	N
2009	chr4	186692852	186692853	rs7680806	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	4q35.1	SORBS2	rs7680806-?	NR	3E-8		0.0371551	[0.024-0.05] unit increase	Illumina [4804024] (imputed)	N
2009	chr4	186696171	186696172	rs11728719	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Varicose veins	22,037 European ancestry cases, 437,665 European ancestry controls, 474 East Asian ancestry cases, 178,252 East Asian ancestry controls	NA	4q35.1		rs11728719-C	NR	5E-9		0.0734	[0.049-0.098] unit decrease	Affymetrix, Illumina [25842955] (imputed)	N
2009	chr4	186697493	186697494	rs2310357	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	4q35.1		rs2310357-C	NR	6E-16		0.0114	[0.0087-0.0141] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
2009	chr4	186697493	186697494	rs2310357	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	4q35.1	SORBS2	rs2310357-?	NR	1E-8		0.017651806	[0.012-0.024] unit increase	Illumina [27896057] (imputed)	N
2009	chr4	186697493	186697494	rs2310357	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	4q35.1		rs2310357-?	NR	3E-20				NR [~ 8900000] (imputed)	N
2009	chr4	186734873	186734874	rs72629650	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Short-term memory (digit-span task)	2,591 European ancestry individuals	NA	4q35.1	SORBS2	rs72629650-C	0.684158571	6E-6		0.138458	[0.079-0.198] unit increase	Illumina [6952813] (imputed)	N
2009	chr4	186764746	186764747	rs11724690	30898391	Lawrenson K	2019-03-19	Gynecol Oncol	Genome-wide association studies identify susceptibility loci for epithelial ovarian cancer in east Asian women.	Epithelial ovarian cancer	3,238 East Asian ancestry cases, 4,083 East Asian ancestry controls	NA	4q35.1		rs11724690-?	NR	2E-6	(clearcell)	2.9		Illumina [11595112] (imputed)	N
2009	chr4	186764746	186764747	rs11724690	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	4q35.1		rs11724690-T	0.2887	2E-9		0.0093	[0.0064-0.0122] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
2009	chr4	186764746	186764747	rs11724690	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	4q35.1	Intergenic	rs11724690-T	0.2887	8E-12	(MTAG)	0.0099	[0.0072-0.0126] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
2010	chr4	186778883	186778884	rs11728712	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	4q35.1	Intergenic	rs11728712-G	0.707	4E-9		0.0147	[0.0098-0.0196] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
2010	chr4	186782570	186782571	rs7654779	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	4q35.1	Intergenic	rs7654779-A	0.7073	4E-14	(MTAG)	0.0137	[0.01-0.017] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
2010	chr4	186789609	186789610	rs6838265	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	4q35.1	Intergenic	rs6838265-A	0.2916	1E-10	(MTAG)	0.0127	[0.0088-0.0166] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
2010	chr4	186789609	186789610	rs6838265	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	4q35.1	Intergenic	rs6838265-G	0.7084	1E-8		0.0122	[0.0081-0.0163] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
2010	chr4	186868966	186868967	rs6552940	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Coronary artery disease in diabetes	361 Korean ancestry cases, 4,951 Korean ancestry controls	NA	4q35.1		rs6552940-G	0.3552	7E-6		1.431	[1.224-1.674]	Affymetrix [7975321] (imputed)	N
2010	chr4	186882087	186882088	rs11132374	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs non-severe)	86 Finnish ancestry male severe erosion cases, 50 Finnish ancestry female severe erosion cases, 817 Finnish ancestry male non-severe erosion controls, 991 Finnish ancestry female non-severe erosion controls	NA	4q35.1	NR	rs11132374-?	NR	8E-6				Illumina [NR] (imputed)	N
2010	chr4	186886071	186886072	rs7673759	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Cardio-cerebrovascular disease in dyslipidemia	1,039 Korean ancestry cases, 19,727 Korean ancestry controls	NA	4q35.1		rs7673759-C	0.09031	8E-7		1.428	[1.24-1.646]	Affymetrix [7975321] (imputed)	N
2010	chr4	186886737	186886738	rs62336502	29855537	Hirata T	2018-05-31	Sci Rep	Japanese GWAS identifies variants for bust-size, dysmenorrhea, and menstrual fever that are eQTLs for relevant protein-coding or long non-coding RNAs.	Vaginal discharge (smell)	367 Japanese ancestry female cases, 5,367 Japanese ancestry female controls	392 Japanese ancestry female cases, 5,222 Japanese ancestry female controls	4q35.1	NR	rs62336502-G	0.130290945	3E-6		0.33672565	[0.2-0.48] unit increase	Affymetrix [536506]	N
2011	chr4	186911042	186911043	rs75898208	31014085	Welsh P	2019-04-24	Circulation	Cardiac Troponin T and Troponin I in the General Population: Comparing and Contrasting their Genetic Determinants and Associations with Outcomes.	Cardiac Troponin-T levels	10,395 European ancestry individuals	NA	4q35.1	SORBS2	rs75898208-A		2E-9		0.735	[NR] unit increase	Illumina [24111857] (imputed)	N
2011	chr4	186933000	186933001	rs1542371	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris color (a* coordinate)	329 South Asian ancestry individuals		4q35.1	intergenic	rs1542371-A	0.714583	7E-6		0.416416	[0.24-0.59] unit decrease	Illumina [640625] (imputed)	N
2011	chr4	187001229	187001230	rs35782497	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	4q35.1		rs35782497-A	NR	1E-18		0.0809	[0.063-0.099] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
2011	chr4	187004073	187004074	rs3775291	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hypothyroidism	30,155 European ancestry cases, 379,986 European ancestry controls, 1,114 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	4q35.1		rs3775291-T	NR	2E-9		0.0649	[0.044-0.086] unit decrease	Affymetrix, Illumina [25801083] (imputed)	N
2011	chr4	187004073	187004074	rs3775291	32581359	Saevarsdottir S	2020-06-24	Nature	FLT3 stop mutation increases FLT3 ligand level and risk of autoimmune thyroid disease.	Autoimmune thyroid disease	30,234 European ancestry cases, 724,172 European ancestry controls	NA	4q35.1	TLR3	rs3775291-C	0.708	7E-12		1.0752687	[NR]	Affymetrix, Illumina [42900000] (imputed)	N
2011	chr4	187004073	187004074	rs3775291	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	4q35.1	TLR3	rs3775291-T	0.297329	3E-18		0.08671187	[0.067-0.106] unit decrease	Affymetrix [7288503] (imputed)	N
2011	chr4	187013999	187014000	rs73025959	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	7,894 Sub-Saharan African ancestry individuals	NA	4q35.1		rs73025959-A	0.928237	7E-6		0.0166438	[0.0095-0.0238] unit decrease	Illumina [13900000] (imputed)	N
2011	chr4	187014547	187014548	rs73025962	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,963 Sub-Saharan African ancestry females	NA	4q35.1		rs73025962-T	0.800271	3E-6		0.0154504	[0.009-0.0219] unit decrease	Illumina [13900000] (imputed)	N
2012	chr4	187120210	187120211	rs13146272	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	Low density lipoprotein cholesterol levels	up to 237,050 European ancestry individuals, up to 16,935 African ancestry individuals, up to 30,468 South Asian ancestry individuals, up to 8,287 East Asian ancestry individuals, 5,084 Hispanic individuals	up to 286,268 European and unknown ancestry individuals	4q35.1	NR	rs13146272-A	NR	1E-6		0.009375436	[0.0056-0.0132] unit increase	Illumina [242289]	N
2012	chr4	187120210	187120211	rs13146272	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	Low density lipoprotein cholesterol levels	up to 237,050 European ancestry individuals	NA	4q35.1	NR	rs13146272-A	0.64	1E-7		0.017	unit decrease	Illumina [242289]	N
2012	chr4	187129779	187129780	rs7377304	30361487	Yan Q	2018-10-25	Mol Psychiatry	Genome-wide association study of brain amyloid deposition as measured by Pittsburgh Compound-B (PiB)-PET imaging.	Cerebral amyloid deposition (PET imaging)	983 European ancestry individuals	NR	4q35.2	CYP4V2	rs7377304-G	0.46	2E-6		0.06	[NR] unit increase	Illumina [at least 7000000] (imputed)	N
2012	chr4	187133575	187133576	rs6842047	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	4q35.2	CYP4V2, KLKB1	rs6842047-A	0.1099398	4E-12	(EA, Coagulation Factor XI)	0.4706	[0.34-0.6] unit decrease	Affymetrix [509946]	N
2012	chr4	187139806	187139807	rs12331051	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	4q35.2	KLKB1	rs12331051-T	0.516	1E-13	(Rho GTPase-activating protein 30, ARHGAP30.12807.89.3)	0.18	[0.14-0.22] unit decrease	Affymetrix [10572788] (imputed)	N
2012	chr4	187139938	187139939	rs12331618	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MRPL58	5,353 Icelandic ancestry individuals	NA	4q35.2		rs12331618-G	0.4982	8E-29		0.200763	[0.17-0.24] unit decrease	Illumina [7506463] (imputed)	N
2012	chr4	187139938	187139939	rs12331618	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ITIH4	5,347 Icelandic ancestry individuals	NA	4q35.2		rs12331618-G	0.4982	8E-18		0.148067	[0.11-0.18] unit decrease	Illumina [7506463] (imputed)	N
2012	chr4	187139938	187139939	rs12331618	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CDH15	5,345 Icelandic ancestry individuals	NA	4q35.2		rs12331618-G	0.4982	2E-18		0.153557	[0.12-0.19] unit decrease	Illumina [7506463] (imputed)	N
2012	chr4	187139938	187139939	rs12331618	33961016	Moksnes MR	2021-05-07	Hum Mol Genet	Genome-wide association study of cardiac troponin I in the general population.	High-sensitivity cardiac troponin I concentration	48,115 European ancestry individuals	NA	4q35.2		rs12331618-G	0.5214	2E-12		0.04	[0.02-0.06] unit increase	Illumina [26711992] (imputed)	N
2012	chr4	187142011	187142012	rs34970894	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	4q35.2	KLKB1	rs34970894-C	0.512	2E-20	(Neuropeptide W, NPW.9986.14.3)	0.23	[0.19-0.27] unit decrease	Affymetrix [10572788] (imputed)	N
2012	chr4	187143801	187143802	rs11132382	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TMEM87B	5,357 Icelandic ancestry individuals	NA	4q35.2		rs11132382-G	0.4987	6E-14		0.139529	[0.1-0.18] unit decrease	Illumina [7506463] (imputed)	N
2012	chr4	187143801	187143802	rs11132382	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PLXDC1	5,357 Icelandic ancestry individuals	NA	4q35.2		rs11132382-G	0.4987	1E-18		0.159293	[0.12-0.19] unit decrease	Illumina [7506463] (imputed)	N
2012	chr4	187143801	187143802	rs11132382	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GPLD1	5,359 Icelandic ancestry individuals	NA	4q35.2		rs11132382-G	0.4987	8E-18		0.155527	[0.12-0.19] unit increase	Illumina [7506463] (imputed)	N
2012	chr4	187143801	187143802	rs11132382	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ETHE1	5,354 Icelandic ancestry individuals	NA	4q35.2		rs11132382-G	0.4987	1E-16		0.150064	[0.11-0.19] unit decrease	Illumina [7506463] (imputed)	N
2012	chr4	187145221	187145222	rs4862669	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein BACH2	5,348 Icelandic ancestry individuals	NA	4q35.2		rs4862669-C	0.4991	2E-15		0.142142	[0.11-0.18] unit decrease	Illumina [7506463] (imputed)	N
2012	chr4	187148386	187148387	rs4253238	23381795	Verweij N	2013-02-04	Hypertension	Genome-wide association study on plasma levels of midregional-proadrenomedullin and C-terminal-pro-endothelin-1.	Circulating vasoactive peptide levels	3,444 European ancestry individuals	3,230 European ancestry individuals	4q35.2	KLKB1	rs4253238-C	0.46	4E-52	(ADM)	0.031	[0.027-0.035] nmol/l increase	Illumina [2269099] (imputed)	N
2012	chr4	187148386	187148387	rs4253238	23381795	Verweij N	2013-02-04	Hypertension	Genome-wide association study on plasma levels of midregional-proadrenomedullin and C-terminal-pro-endothelin-1.	Circulating vasoactive peptide levels	3,444 European ancestry individuals	3,230 European ancestry individuals	4q35.2	KLKB1	rs4253238-C	0.46	1E-122	(ET)	5.136	[4.71-5.56] pmol/l increase	Illumina [2269099] (imputed)	N
2012	chr4	187149539	187149540	rs1912826	30837465	Wittemans LBL	2019-03-05	Nat Commun	Assessing the causal association of glycine with risk of cardio-metabolic diseases.	Glycine levels	80,003 European ancestry individuals	NA	4q35.2	NR	rs1912826-A	0.5217	7E-10	(conditional)			Affymetrix, Illumina [NR] (imputed)	N
2012	chr4	187149539	187149540	rs1912826	22916037	Inouye M	2012-08-16	PLoS Genet	Novel Loci for metabolic networks and multi-tissue expression studies reveal genes for atherosclerosis.	Metabolite levels	6,608 European ancestry individuals	NA	4q35.2	CYP4V2, KLKB1	rs1912826-?	0.43	4E-12				Illumina [~ 2000000] (imputed)	N
2012	chr4	187150477	187150478	rs3775298	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DBNL	5,366 Icelandic ancestry individuals	NA	4q35.2		rs3775298-G	0.4995	8E-19		0.166514	[0.13-0.2] unit increase	Illumina [7506463] (imputed)	N
2012	chr4	187150477	187150478	rs3775298	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	CX3CL1 levels	21,758 European ancestry individuals	9,173 individuals	4q35.2		rs3775298-A	0.48	1E-12		0.0738	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
2012	chr4	187150477	187150478	rs3775298	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	4q35.2	KLKB1	rs3775298-G	0.513	5E-28	(Tyrosine-protein kinase JAK2, JAK2.4998.50.2)	0.27	[0.23-0.31] unit decrease	Affymetrix [10572788] (imputed)	N
2012	chr4	187150477	187150478	rs3775298	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	4q35.2	KLKB1	rs3775298-G	0.513	2E-17	(Chromogranin-A, CHGA.8476.11.3)	0.21	[0.17-0.25] unit decrease	Affymetrix [10572788] (imputed)	N
2012	chr4	187150805	187150806	rs1511802	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	4q35.2	KLKB1	rs1511802-C	0.382	5E-14	(Bone sialoprotein 2, IBSP.3415.61.2)	0.19	[0.13-0.25] unit decrease	Affymetrix [10572788] (imputed)	N
2012	chr4	187150805	187150806	rs1511802	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	4q35.2	KLKB1	rs1511802-C	0.3704819	9E-29	(Plasma kallikrein)	0.4755	[0.39-0.56] unit increase	Affymetrix [509946]	N
2012	chr4	187152326	187152327	rs4241816	22286219	Kettunen J	2012-01-29	Nat Genet	Genome-wide association study identifies multiple loci influencing human serum metabolite levels.	Metabolite levels	8,330 European ancestry individuals	NA	4q35.2	KLKB1	rs4241816-?	NR	6E-13	(His, Val)	0.12	[0.081-0.159] unit increase	Illumina [~ 7700000] (imputed)	N
2012	chr4	187153785	187153786	rs4241818	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SEC11C	5,361 Icelandic ancestry individuals	NA	4q35.2		rs4241818-C	0.4993	2E-15		0.140556	[0.11-0.18] unit decrease	Illumina [7506463] (imputed)	N
2012	chr4	187153785	187153786	rs4241818	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	4q35.2	KLKB1	rs4241818-C	0.514	7E-14	(Neurensin-1, NRSN1.11654.77.3)	0.18	[0.14-0.22] unit decrease	Affymetrix [10572788] (imputed)	N
2012	chr4	187153785	187153786	rs4241818	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	4q35.2	KLKB1	rs4241818-C	0.514	5E-38	(Laminin subunit alpha-4, LAMA4.6577.64.3)	0.31	[0.27-0.35] unit decrease	Affymetrix [10572788] (imputed)	N
2012	chr4	187153785	187153786	rs4241818	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	4q35.2	KLKB1	rs4241818-C	0.514	5E-15	(Interleukin-13 receptor subunit alpha-1, IL13RA1.2633.52.2)	0.19	[0.15-0.23] unit increase	Affymetrix [10572788] (imputed)	N
2012	chr4	187153785	187153786	rs4241818	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	4q35.2	KLKB1	rs4241818-C	0.514	5E-15	(Glycoprotein Xg, XG.8044.90.3)	0.19	[0.15-0.23] unit decrease	Affymetrix [10572788] (imputed)	N
2012	chr4	187153785	187153786	rs4241818	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	4q35.2	KLKB1	rs4241818-C	0.514	4E-24	(Drebrin-like protein, DBNL.4978.54.2)	0.25	[0.21-0.29] unit increase	Affymetrix [10572788] (imputed)	N
2012	chr4	187153785	187153786	rs4241818	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	4q35.2	KLKB1	rs4241818-C	0.514	4E-17	(Bone morphogenetic protein 7, BMP7.2972.57.2)	0.21	[0.17-0.25] unit increase	Affymetrix [10572788] (imputed)	N
2012	chr4	187153785	187153786	rs4241818	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	4q35.2	KLKB1	rs4241818-C	0.514	3E-32	(Cadherin-15, CDH15.11215.6.3)	0.29	[0.25-0.33] unit decrease	Affymetrix [10572788] (imputed)	N
2012	chr4	187153785	187153786	rs4241818	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	4q35.2	KLKB1	rs4241818-C	0.514	3E-24	(Progonadoliberin-1, GNRH1.5627.53.3)	0.25	[0.21-0.29] unit decrease	Affymetrix [10572788] (imputed)	N
2012	chr4	187153785	187153786	rs4241818	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	4q35.2	KLKB1	rs4241818-C	0.514	3E-12	(Testis-expressed sequence 29 protein, TEX29.10557.6.3)	0.17	[0.13-0.21] unit increase	Affymetrix [10572788] (imputed)	N
2012	chr4	187153785	187153786	rs4241818	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	4q35.2	KLKB1	rs4241818-C	0.514	1E-48	(Transmembrane protein 87B, TMEM87B.13485.20.3)	0.35	[0.31-0.39] unit decrease	Affymetrix [10572788] (imputed)	N
2012	chr4	187155487	187155488	rs4253248	31014085	Welsh P	2019-04-24	Circulation	Cardiac Troponin T and Troponin I in the General Population: Comparing and Contrasting their Genetic Determinants and Associations with Outcomes.	Cardiac troponin-I levels	14,579 European ancestry individuals	NA	4q35.2	KLKB1, CYP4V2, F11	rs4253248-A		1E-8		0.0497	[NR] unit increase	Illumina [24111857] (imputed)	N
2012	chr4	187156504	187156504	rs142201367	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	4q35.2	KLKB1	rs142201367-TTTTCTAACTTCATCACC	0.492	4E-13	(Persulfide dioxygenase ETHE1, mitochondrial, ETHE1.3847.56.2)	0.18	[0.12-0.24] unit decrease	Affymetrix [10572788] (imputed)	N
2012	chr4	187156504	187156504	rs142201367	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	4q35.2	KLKB1	rs142201367-TTTTCTAACTTCATCACC	0.492	3E-16	(Adrenomedullin, ADM.14115.34.3)	0.2	[0.16-0.24] unit decrease	Affymetrix [10572788] (imputed)	N
2012	chr4	187157139	187157140	rs4241819	34532976	Wan J	2021-09-17	J Thromb Haemost	Kallikrein augments the anticoagulant function of the protein C system in thrombin generation.	Thrombomodulin sensitivity ratio (normalized peak thrombin generation to thrombomodulin)	327 European ancestry individuals	NA	4q35.2		rs4241819-T	0.484	2E-8		0.37	ratio increase	Illumina [7000000] (imputed)	N
2012	chr4	187157139	187157140	rs4241819	34532976	Wan J	2021-09-17	J Thromb Haemost	Kallikrein augments the anticoagulant function of the protein C system in thrombin generation.	Thrombomodulin sensitivity ratio (normalized endogenous thrombin potential to thrombomodulin)	327 European ancestry individuals	NA	4q35.2		rs4241819-T	0.485	4E-8		0.36	ratio increase	Illumina [7000000] (imputed)	N
2012	chr4	187157139	187157140	rs4241819	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	4q35.2	KLKB1	rs4241819-T	0.507	7E-15	(Interleukin-2, IL2.3070.1.2)	0.19	[0.15-0.23] unit increase	Affymetrix [10572788] (imputed)	N
2012	chr4	187157139	187157140	rs4241819	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	4q35.2	KLKB1	rs4241819-T	0.507	4E-19	(Protachykinin-1, TAC1.9337.43.3)	0.22	[0.18-0.26] unit decrease	Affymetrix [10572788] (imputed)	N
2012	chr4	187157139	187157140	rs4241819	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	4q35.2	KLKB1	rs4241819-T	0.507	1E-16	(Acidic leucine-rich nuclear phosphoprotein 32 family member B, ANP32B.4194.26.3)	0.2	[0.16-0.24] unit decrease	Affymetrix [10572788] (imputed)	N
2012	chr4	187157139	187157140	rs4241819	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	4q35.2	KLKB1	rs4241819-T	0.507	1E-12	(Endothelin-2, EDN2.12574.36.3)	0.17	[0.13-0.21] unit decrease	Affymetrix [10572788] (imputed)	N
2012	chr4	187157139	187157140	rs4241819	27412012	Lamina C	2016-07-12	Hum Mol Genet	A genome-wide association meta-analysis on apolipoprotein A-IV concentrations.	Apolipoprotein A-IV levels	13,813 European ancestry individuals	2,267 European ancestry individuals	4q35.2	KLKB1	rs4241819-C	0.452	6E-14		0.1469	[0.094-0.2] unit increase	Affymetrix, Illumina [at least 7000000] (imputed)	N
2012	chr4	187157249	187157251	rs10582034	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	4q35.2	KLKB1	rs10582034-C	0.497	9E-24	(CD63 antigen, CD63.9190.7.3)	0.25	[0.21-0.29] unit increase	Affymetrix [10572788] (imputed)	N
2012	chr4	187157249	187157251	rs10582034	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	4q35.2	KLKB1	rs10582034-C	0.497	7E-21	(Activating signal cointegrator 1 complex subunit 1, ASCC1.10647.18.3)	0.23	[0.19-0.27] unit increase	Affymetrix [10572788] (imputed)	N
2012	chr4	187157284	187157287	rs143361672	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	4q35.2	KLKB1	rs143361672-C	0.514	7E-14	(Peptidyl-glycine alpha-amidating monooxygenase, PAM.5620.13.3)	0.18	[0.14-0.22] unit decrease	Affymetrix [10572788] (imputed)	N
2012	chr4	187157284	187157287	rs143361672	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	4q35.2	KLKB1	rs143361672-C	0.514	3E-35	(Neurexin-1, NRXN1.8971.9.3)	0.3	[0.26-0.34] unit decrease	Affymetrix [10572788] (imputed)	N
2012	chr4	187157284	187157287	rs143361672	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	4q35.2	KLKB1	rs143361672-C	0.514	2E-25	(Dipeptidase 2, DPEP2.8327.26.3)	0.25	[0.21-0.29] unit decrease	Affymetrix [10572788] (imputed)	N
2012	chr4	187157457	187157458	rs4253252	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	4q35.2	KLKB1	rs4253252-T	0.48	3E-22	(X-11792)	0.086	[0.068-0.104] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
2012	chr4	187157457	187157458	rs4253252	23093944	Krumsiek J	2012-10-18	PLoS Genet	Mining the unknown: a systems approach to metabolite identification combining genetic and metabolic information.	Serum metabolite levels	1,678 European ancestry individuals	NA	4q35.2	KLKB1	rs4253252-?	NR	6E-14	(bradykinindesarg9)	0.09777	[NR] unit increase	Affymetrix [655658]	N
2012	chr4	187157457	187157458	rs4253252	21886157	Suhre K	2011-08-31	Nature	Human metabolic individuality in biomedical and pharmaceutical research.	Metabolic traits	2,820 European ancestry individuals	NA	4q35.2	KLKB1	rs4253252-T	0.492	7E-18	(bradykinin, des-arg(9))	0.238	[NR] unit decrease	Affymetrix, Illumina [534665]	N
2012	chr4	187158033	187158034	rs3733402	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	vascular endothelial growth factor D levels	21,758 European ancestry individuals	9,173 individuals	4q35.2		rs3733402-A	0.52	2E-83		0.1717	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
2012	chr4	187158033	187158034	rs3733402	30659681	Lindstrom S	2019-01-19	Genet Epidemiol	A large-scale exome array analysis of venous thromboembolism.	Venous thromboembolism	8,332 European ancestry cases, 16,087 European ancestry controls, 382 African-American cases, 1,476 African-American controls	NA	4q35.2	KLKB1, CYP4V2	rs3733402-?	0.467	3E-11		0.87	[0.84-0.91]	Illumina [64794]	N
2012	chr4	187158033	187158034	rs3733402	27005778	Kettunen J	2016-03-23	Nat Commun	Genome-wide study for circulating metabolites identifies 62 loci and reveals novel systemic effects of LPA.	Metabolite levels (small molecules and protein measures)	2,118 Erasmus Rucphen (founder/genetic isolate), 22,807 European ancestry individuals	NA	4q35.2	KLKB1	rs3733402-A	0.57	9E-15	(Histidine)	0.08	[0.06-0.1] unit increase	Affymetrix, Illumina, Perlegen [12133295] (imputed)	N
2012	chr4	187158033	187158034	rs3733402	25561047	Musani SK	2015-01-05	Circ Cardiovasc Genet	Genome-wide association analysis of plasma B-type natriuretic peptide in blacks: the Jackson Heart Study.	B-type natriuretic peptide levels	2,790 Black individuals	NA	4q35.2	KLKB1	rs3733402-G	0.26	2E-11		0.2	[0.14-0.26] unit increase	Affymetrix [2500000] (imputed)	N
2012	chr4	187158033	187158034	rs3733402	24625756	Yu B	2014-03-13	PLoS Genet	Genetic determinants influencing human serum metabolome among African Americans.	Serum metabolite levels	1,260 African American individuals	NA	4q35.2	KLKB1	rs3733402-A	0.74	9E-27	(HXGXA)	0.44	[NR] unit increase	Affymetrix [2341704] (imputed)	N
2012	chr4	187158033	187158034	rs3733402	24625756	Yu B	2014-03-13	PLoS Genet	Genetic determinants influencing human serum metabolome among African Americans.	Serum metabolite levels	1,260 African American individuals	NA	4q35.2	KLKB1	rs3733402-A	0.74	7E-25	(Leucylphenylalanine)	0.28	[NR] unit increase	Affymetrix [2341704] (imputed)	N
2012	chr4	187158033	187158034	rs3733402	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	4q35.2	KLKB1	rs3733402-G	0.337	9E-8	(IGF1 free )	0.04	[NR] ng/mL increase	Illumina [899892]	N
2012	chr4	187160393	187160394	rs139276089	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	4q35.2	KLKB1	rs139276089-C	0.512	6E-21	(Glucagon, GCG.4891.50.1)	0.23	[0.19-0.27] unit decrease	Affymetrix [10572788] (imputed)	N
2012	chr4	187161047	187161048	rs71640034	30837465	Wittemans LBL	2019-03-05	Nat Commun	Assessing the causal association of glycine with risk of cardio-metabolic diseases.	Glycine levels	80,003 European ancestry individuals	NA	4q35.2	KLKB1	rs71640034-A	0.511	6E-10		0.034	[0.022-0.046] unit increase	Affymetrix, Illumina [NR] (imputed)	N
2012	chr4	187161047	187161048	rs71640034	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	4q35.2	KLKB1	rs71640034-A	0.513	7E-17	(Tumor necrosis factor receptor superfamily member 16, NGFR.8374.5.3)	0.21	[0.17-0.25] unit decrease	Affymetrix [10572788] (imputed)	N
2012	chr4	187161047	187161048	rs71640034	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	4q35.2	KLKB1	rs71640034-A	0.513	2E-33	(Glucosidase 2 subunit beta, PRKCSH.5687.5.3)	0.29	[0.25-0.33] unit increase	Affymetrix [10572788] (imputed)	N
2012	chr4	187161047	187161048	rs71640034	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	4q35.2	KLKB1	rs71640034-A	0.513	1E-13	(Keratin-associated protein 2-4, KRTAP2.4.14615.46.3)	0.18	[0.14-0.22] unit decrease	Affymetrix [10572788] (imputed)	N
2012	chr4	187161119	187161120	rs71640036	34668383	Leskela J	2021-10-20	J Am Heart Assoc	Genetic Profile of Endotoxemia Reveals an Association With Thromboembolism and Stroke.	Serum lipopolysaccharide activity	11,296 European ancestry individuals	NA	4q35.2	NR	rs71640036-G	0.4204	5E-78		0.251	[0.22-0.28] unit decrease	Affymetrix, Illumina [9900000] (imputed)	N
2012	chr4	187161119	187161120	rs71640036	27656708	Zhang W	2016-09-22	Thromb Haemost	Genome-wide association reveals that common genetic variation in the kallikrein-kinin system is associated with serum L-arginine levels.	L-arginine levels	901 European ancestry individuals, 1,394 Indian Asian ancestry individuals	1,000 European ancestry individuals, 2,981 individuals	4q35.2	KLKB1, F11, CYP4V2	rs71640036-G	0.5	2E-22	(random effects model)	1.4	[0.42-2.38] ?mol/l decrease (replication)	Illumina [~ 8000000] (imputed)	N
2012	chr4	187161210	187161211	rs66530140	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Urokinase plasminogen activator surface receptor levels	21,758 European ancestry individuals	9,173 individuals	4q35.2		rs66530140-T	0.48	3E-16		0.0676	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
2012	chr4	187163858	187163859	rs4253276	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Activated partial thromboplastin time	37,767 Japanese ancestry individuals	NA	4q35.2	NR	rs4253276-?	NR	4E-20		0.08208	[0.065-0.1] unit increase novel	Illumina [6108953] (imputed)	N
2012	chr4	187164080	187164081	rs61000956	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	4q35.2	KLKB1	rs61000956-T	0.421174	6E-23	(phenylalanylglycine)	0.229	[0.18-0.27] unit decrease	Illumina [13039987] (imputed)	N
2012	chr4	187164080	187164081	rs61000956	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	1,509 European ancestry individuals	4q35.2	KLKB1	rs61000956-T	0.421174	6E-23	(phenylalanylglycine)	0.229	[0.18-0.27] unit decrease	Illumina [13039987] (imputed)	N
2012	chr4	187164398	187164399	rs4253282	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	4q35.2	KLKB1	rs4253282-T	0.512	5E-12	(Inhibin beta C chain, INHBC.6408.2.3)	0.17	[0.13-0.21] unit decrease	Affymetrix [10572788] (imputed)	N
2012	chr4	187164398	187164399	rs4253282	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	4q35.2	KLKB1	rs4253282-T	0.512	4E-16	(Transmembrane glycoprotein NMB, GPNMB.8606.39.3)	0.2	[0.16-0.24] unit decrease	Affymetrix [10572788] (imputed)	N
2012	chr4	187165210	187165211	rs4253283	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-16 levels	3,483 Finnish ancestry individuals	NA	4q35.2	NR	rs4253283-C		2E-8		0.146	[0.095-0.197] SD units decrease	NR [10700000] (imputed)	N
2012	chr4	187169166	187169167	rs1973612	33838163	Luo S	2021-04-07	Kidney Int	Genome-wide association study of serum metabolites in the African American Study of Kidney Disease and Hypertension.	Serum metabolite concentrations in chronic kidney disease	619 African American individuals	NA	4q35.2	KLKB1, CYP4V2, F11, CSMD1, PTHLH	rs1973612-?	NR	5E-11	(histidylalanine)	0.36	[NR] unit increase	Illumina [14760605] (imputed)	N
2012	chr4	187169166	187169167	rs1973612	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	4q35.2	KLKB1	rs1973612-T	0.511	1E-23	(Parathyroid hormone-related protein, PTHLH.2962.50.2)	0.25	[0.21-0.29] unit decrease	Affymetrix [10572788] (imputed)	N
2012	chr4	187169166	187169167	rs1973612	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	4q35.2	KLKB1	rs1973612-T	0.511	1E-14	(CUB and sushi domain-containing protein 1, CSMD1.9598.23.3)	0.19	[0.15-0.23] unit increase	Affymetrix [10572788] (imputed)	N
2013	chr4	187172279	187172280	rs2304595	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein KLKB1	5,364 Icelandic ancestry individuals	NA	4q35.2		rs2304595-A	0.4146	1E-191		0.500587	[0.47-0.53] unit increase	Illumina [7506463] (imputed)	N
2013	chr4	187172279	187172280	rs2304595	32492067	Ruffieux H	2020-06-03	PLoS Comput Biol	A fully joint Bayesian quantitative trait locus mapping of human protein abundance in plasma.	Protein quantitative trait loci	394 European ancestry individuals	548 European ancestry individuals	4q35.2	NR	rs2304595-?	NR	3E-9	(Prekallikrein)			Illumina [~ 4000000] (imputed)	N
2013	chr4	187173690	187173691	rs4253305	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q35.2	NR	rs4253305-A	0.58453125	9E-18	(ICT1, 6380_23_3)	0.21372622	[0.17-0.26] unit increase	Illumina [> 1000000] (imputed)	N
2013	chr4	187173690	187173691	rs4253305	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q35.2	NR	rs4253305-A	0.58453125	7E-98	(KLKB1, 4152_58_2)	0.48509726	[0.44-0.53] unit decrease	Illumina [> 1000000] (imputed)	N
2013	chr4	187173690	187173691	rs4253305	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q35.2	NR	rs4253305-A	0.58453125	7E-22	(LEAP2, 5708_1_3)	0.24014296	[0.19-0.29] unit increase	Illumina [> 1000000] (imputed)	N
2013	chr4	187173690	187173691	rs4253305	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q35.2	NR	rs4253305-A	0.58453125	7E-11	(GPLD1, 11939_11_3)	0.16616072	[0.12-0.22] unit decrease	Illumina [> 1000000] (imputed)	N
2013	chr4	187173690	187173691	rs4253305	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q35.2	NR	rs4253305-A	0.58453125	5E-10	(ETHE1, 3847_56_2)	0.1550761	[0.11-0.2] unit increase	Illumina [> 1000000] (imputed)	N
2013	chr4	187173690	187173691	rs4253305	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q35.2	NR	rs4253305-A	0.58453125	4E-24	(SERPINA5, 3389_7_2)	0.2463307	[0.2-0.29] unit increase	Illumina [> 1000000] (imputed)	N
2013	chr4	187173690	187173691	rs4253305	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q35.2	NR	rs4253305-A	0.58453125	4E-10	(CDH15, 11215_6_3)	0.15288754	[0.11-0.2] unit increase	Illumina [> 1000000] (imputed)	N
2013	chr4	187173690	187173691	rs4253305	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q35.2	NR	rs4253305-A	0.58453125	3E-10	(ITIH4, 4811_33_3)	0.15579587	[0.11-0.2] unit increase	Illumina [> 1000000] (imputed)	N
2013	chr4	187173690	187173691	rs4253305	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q35.2	NR	rs4253305-A	0.58453125	2E-23	(F11, 2190_55_1)	0.23454303	[0.19-0.28] unit decrease	Illumina [> 1000000] (imputed)	N
2013	chr4	187173690	187173691	rs4253305	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q35.2	NR	rs4253305-A	0.58453125	2E-11	(SEC11C, 10658_28_3)	0.1721901	[0.12-0.22] unit increase	Illumina [> 1000000] (imputed)	N
2013	chr4	187173690	187173691	rs4253305	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q35.2	NR	rs4253305-A	0.58453125	2E-10	(PLXDC1, 9235_3_3)	0.15586707	[0.11-0.2] unit increase	Illumina [> 1000000] (imputed)	N
2013	chr4	187173690	187173691	rs4253305	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q35.2	NR	rs4253305-A	0.58453125	1E-9	(TMEM87B, 13485_20_3)	0.15440392	[0.1-0.2] unit increase	Illumina [> 1000000] (imputed)	N
2013	chr4	187173690	187173691	rs4253305	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q35.2	NR	rs4253305-A	0.58453125	1E-8	(NCF4, 14060_67_3)	0.14118104	[0.093-0.189] unit increase	Illumina [> 1000000] (imputed)	N
2013	chr4	187173690	187173691	rs4253305	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q35.2	NR	rs4253305-A	0.58453125	1E-10	(DBNL, 4978_54_2)	0.16469689	[0.11-0.21] unit decrease	Illumina [> 1000000] (imputed)	N
2013	chr4	187173801	187173801	rs200357845	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	4q35.2	KLKB1	rs200357845-GCCACCAATCCCA	0.505	4E-39	(Phosphatidylinositol-glycan-specific phospholipase D, GPLD1.11939.11.3)	0.32	[0.28-0.36] unit increase	Affymetrix [10572788] (imputed)	N
2013	chr4	187173801	187173801	rs200357845	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	4q35.2	KLKB1	rs200357845-GCCACCAATCCCA	0.505	4E-12	(Signal peptidase complex catalytic subunit SEC11C, SEC11C.10658.28.3)	0.17	[0.13-0.21] unit decrease	Affymetrix [10572788] (imputed)	N
2013	chr4	187174682	187174683	rs4253311	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LEAP2	5,368 Icelandic ancestry individuals	NA	4q35.2		rs4253311-G	0.4991	8E-30		0.211742	[0.18-0.25] unit decrease	Illumina [7506463] (imputed)	N
2013	chr4	187174682	187174683	rs4253311	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	4q35.2	KLKB1	rs4253311-G	0.511	1E-13	(Protein MENT, MENT.5744.12.3)	0.18	[0.14-0.22] unit decrease	Affymetrix [10572788] (imputed)	N
2013	chr4	187174682	187174683	rs4253311	28011710	Benyamin B	2016-12-22	Hum Mol Genet	Identification of novel loci affecting circulating chromogranins and related peptides.	Circulating chromogranin peptide levels	up to 540 European American and Mexican American individuals, up to 1,267 individuals	NA	4q35.2	KLKB1	rs4253311-?	NR	3E-30	(CHGA361-372)	0.42	[0.35-0.49] unit increase	Illumina [at least 2587527] (imputed)	N
2013	chr4	187174682	187174683	rs4253311	28011710	Benyamin B	2016-12-22	Hum Mol Genet	Identification of novel loci affecting circulating chromogranins and related peptides.	Circulating chromogranin peptide levels	up to 540 European American and Mexican American individuals, up to 1,267 individuals	NA	4q35.2	KLKB1	rs4253311-?	NR	1E-7	(CHGB439-451)	0.156	[0.066-0.246] unit increase (QIMR cohort)	Illumina [at least 2587527] (imputed)	N
2013	chr4	187174682	187174683	rs4253311	25477429	Lieb W	2014-12-04	Circ Cardiovasc Genet	Genome-wide meta-analyses of plasma renin activity and concentration reveal association with the kininogen 1 and prekallikrein genes.	Plasma renin activity levels	5,275 European ancestry individuals	NA	4q35.2	KLKB1	rs4253311-A	NR	6E-8				Affymetrix, Illumina [~ 2500000] (imputed)	N
2013	chr4	187174682	187174683	rs4253311	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	4q35.2	KLKB1	rs4253311-A	0.49	4E-48	(bradykinin, des-arg(9))	0.141	[0.12-0.16] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
2013	chr4	187175721	187175722	rs2292423	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SERPINA5	5,356 Icelandic ancestry individuals	NA	4q35.2		rs2292423-A	0.4146	4E-34		0.220269	[0.18-0.26] unit decrease	Illumina [7506463] (imputed)	N
2013	chr4	187185384	187185385	rs3756008	21980494	Germain M	2011-09-27	PLoS One	Genetics of venous thrombosis: insights from a new genome wide association study.	Venous thromboembolism	1,542 European ancestry cases, 1,110 European ancestry controls	NA	4q35.2	F11	rs3756008-T	0.44	6E-11		1.4	[NR]	Illumina [481002]	N
2013	chr4	187188093	187188094	rs4253399	23650146	Tang W	2013-05-05	Genet Epidemiol	A genome-wide association study for venous thromboembolism: the extended cohorts for heart and aging research in genomic epidemiology (CHARGE) consortium.	Venous thromboembolism	1,618 European ancestry cases, 42,881 European ancestry controls	3,231 European ancestry cases, 3,536 European ancestry controls	4q35.2	F11	rs4253399-G	0.61	3E-14		1.24	[1.17-1.31]	Affymetrix, Illumina [2543885] (imputed)	N
2013	chr4	187190809	187190810	rs4253405	32445792	Bani-Fatemi A	2020-05-20	Neurosci Lett	Genome-wide association study of aggression and violence in schizophrenia.	Verbal aggression in schizophrenia	205 individuals	NA	4q35.2	NR	rs4253405-G	NR	5E-6		2.809	NR	Illumina [NR]	N
2013	chr4	187192480	187192481	rs2036914	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 799 African American cases, 157,769 European ancestry controls, 14,353 African American controls	NA	4q35.2	F11	rs2036914-C	NR	2E-54		1.1627907	[1.15-1.19]	Affymetrix, Illumina [12923718] (imputed)	N
2013	chr4	187195550	187195551	rs1593	22703881	Tang W	2012-06-14	Am J Hum Genet	Genetic associations for activated partial thromboplastin time and prothrombin time, their gene expression profiles, and risk of coronary artery disease.	Activated partial thromboplastin time	9,240 European ancestry individuals	2611 European ancestry individuals	4q35.2	F11	rs1593-A	NR	2E-18		0.536	[0.41-0.66] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
2013	chr4	187197993	187197994	rs4253416	28373160	Klarin D	2017-04-01	Circ Cardiovasc Genet	Genetic Analysis of Venous Thromboembolism in UK Biobank Identifies the ZFPM2 Locus and Implicates Obesity as a Causal Risk Factor.	Venous thromboembolism	3,290 European ancestry cases, 116,868 European ancestry controls	65,734 cases and controls (see Germain, 2015)	4q35.2	F11	rs4253416-T	0.45	2E-10		1.18	[1.12-1.24]	Affymetrix [9155762] (imputed)	N
2013	chr4	187199004	187199005	rs4253417	31676865	Klarin D	2019-11-01	Nat Genet	Genome-wide association analysis of venous thromboembolism identifies new risk loci and genetic overlap with arterial vascular disease.	Venous thromboembolism	23,151 European ancestry cases, 553,439 European ancestry controls, 2,261 African American cases, 49,400 African American controls, 654 Hispanic cases, 21,214 Hispanic controls	17,672 cases, 167,295 controls	4q35.2	F11	rs4253417-C	0.3874	8E-96		1.2159188	[1.19-1.24]	Affymetrix [up to 34000000] (imputed)	N
2013	chr4	187199004	187199005	rs4253417	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q35.2	NR	rs4253417-T	0.62578125	5E-10	(STX7, 8274_64_3)	0.16012746	[0.11-0.21] unit decrease	Illumina [> 1000000] (imputed)	N
2013	chr4	187199004	187199005	rs4253417	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q35.2	NR	rs4253417-T	0.62578125	4E-61	(F11, 2190_55_1)	0.389818	[0.34-0.44] unit decrease	Illumina [> 1000000] (imputed)	N
2013	chr4	187199004	187199005	rs4253417	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4q35.2	NR	rs4253417-T	0.62578125	1E-18	(KLKB1, 4152_58_2)	0.21397115	[0.17-0.26] unit decrease	Illumina [> 1000000] (imputed)	N
2013	chr4	187199004	187199005	rs4253417	28053049	Sennblad B	2017-02-01	Hum Mol Genet	Genome-wide association study with additional genetic and post-transcriptional analyses reveals novel regulators of plasma factor XI levels.	Factor XI	16,169 European ancestry individuals	2,045 European ancestry individuals	4q35.2	F11	rs4253417-T	0.592	3E-193		0.0735	unit decrease	Affymetrix, Illumina [7353638] (imputed)	N
2013	chr4	187199004	187199005	rs4253417	25772935	Germain M	2015-03-12	Am J Hum Genet	Meta-analysis of 65,734 individuals identifies TSPAN15 and SLC44A2 as two susceptibility loci for venous thromboembolism.	Venous thromboembolism	7,507 European ancestry cases, 52,632 European ancestry controls	3,009 European ancestry cases, 2,586 European ancestry controls	4q35.2	F11	rs4253417-C	0.405	1E-23		1.27	[1.22-1.34]	Affymetrix, Illumina [6751884] (imputed)	N
2013	chr4	187200549	187200550	rs56810541	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Activated partial thromboplastin time	37,767 Japanese ancestry individuals	NA	4q35.2	F11	rs56810541-?	NR	2E-28		0.09292	[0.076-0.109] unit decrease novel	Illumina [6108953] (imputed)	N
2013	chr4	187204936	187204937	rs4253421	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein F11	5,337 Icelandic ancestry individuals	NA	4q35.2		rs4253421-A	0.1452	3E-80		0.408588	[0.37-0.45] unit decrease	Illumina [7506463] (imputed)	N
2013	chr4	187204936	187204937	rs4253421	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 799 African American cases, 157,769 European ancestry controls, 14,353 African American controls	NA	4q35.2	F11	rs4253421-G	NR	8E-41		1.25	[1.2-1.28]	Affymetrix, Illumina [12923718] (imputed)	N
2013	chr4	187204936	187204937	rs4253421	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Activated partial thromboplastin time	37,767 Japanese ancestry individuals	NA	4q35.2	NR	rs4253421-?	NR	5E-13		0.1195	[0.087-0.152] unit increase novel	Illumina [6108953] (imputed)	N
2013	chr4	187206248	187206249	rs3756011	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein STX7	5,362 Icelandic ancestry individuals	NA	4q35.2		rs3756011-A	0.3891	2E-21		0.179001	[0.14-0.22] unit increase	Illumina [7506463] (imputed)	N
2013	chr4	187207380	187207381	rs2289252	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein F11	5,337 Icelandic ancestry individuals	NA	4q35.2		rs2289252-T	0.3874	7E-125		0.357162	[0.33-0.39] unit increase	Illumina [7506463] (imputed)	N
2013	chr4	187207380	187207381	rs2289252	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 799 African American cases, 157,769 European ancestry controls, 14,353 African American controls	NA	4q35.2	F11	rs2289252-T	NR	3E-65		1.19	[1.16-1.21]	Affymetrix, Illumina [12923718] (imputed)	N
2013	chr4	187207380	187207381	rs2289252	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 157,769 European ancestry controls	NA	4q35.2	NR	rs2289252-?	NR	1E-63		0.1713	[0.15-0.19] unit increase	Affymetrix, Illumina [12923718] (imputed)	N
2013	chr4	187207380	187207381	rs2289252	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	4q35.2	F11, F11-AS1	rs2289252-T	0.4127144	5E-25	(Coagulation Factor XI)	0.4419	[0.36-0.52] unit increase	Affymetrix [509946]	N
2013	chr4	187207380	187207381	rs2289252	22703881	Tang W	2012-06-14	Am J Hum Genet	Genetic associations for activated partial thromboplastin time and prothrombin time, their gene expression profiles, and risk of coronary artery disease.	Activated partial thromboplastin time	9,240 European ancestry individuals	2611 European ancestry individuals	4q35.2	F11	rs2289252-C	NR	6E-43		0.483	[0.40-0.57] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
2013	chr4	187213882	187213883	rs4444878	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Ischemic stroke (cardioembolic)	7,193 European ancestry cases, 406,111 European ancestry controls, 847 East Asian ancestry cases, 28,195 East Asian ancestry controls, 422 South Asian ancestry cases, 6,707 South Asian ancestry controls, 414 African American cases, 15,146 African American controls, 31 Asian ancestry cases, 333 Asian ancestry controls, 99 Latin American cases, 692 Latin American controls	NA	4q35.2	F11	rs4444878-A	0.39	5E-8		1.1	[1.06-1.14]	NR [~ 8000000] (imputed)	N
2013	chr4	187213882	187213883	rs4444878	26908601	Hinds DA	2016-02-09	Hum Mol Genet	Genome-wide association analysis of self-reported events in 6135 individuals and 252 827 controls identifies 8 loci associated with thrombosis.	Thrombosis	6,135 European ancestry cases, 252,827 European ancestry controls	NA	4q35.2	F11	rs4444878-A	0.4012	7E-28		1.2345679	[1.19-1.28]	Illumina [at least 560000] (imputed)	N
2013	chr4	187247088	187247089	rs7349633	29559738	Sasayama D	2018-03-20	J Hum Genet	A genome-wide association study on photic sneeze syndrome in a Japanese population.	Photic sneeze reflex	360 Japanese ancestry cases, 11,049 Japanese ancestry controls	NA	4q35.2		rs7349633-T	NR	4E-6		1.776	[1.390-2.270]	Illumina [210086]	N
2013	chr4	187257575	187257576	rs13148903	20339536	Barber MJ	2010-03-22	PLoS One	Genome-wide association of lipid-lowering response to statins in combined study populations.	Response to statin therapy	3,928 European ancestry individuals	NA	4q35.2	F11, LOC544042, KLKB1	rs13148903-G	0.25	3E-6	(LDL, sum)			Illumina [~ 2500000] (imputed)	N
2013	chr4	187285086	187285087	rs145334889	26423011	Wain LV	2015-09-27	Lancet Respir Med	Novel insights into the genetics of smoking behaviour, lung function, and chronic obstructive pulmonary disease (UK BiLEVE): a genetic association study in UK Biobank.	Lung function (low FEV1 vs high FEV1) x smoking interaction	9,745 European ancestry never smokers with low FEV1 measurements, 4,902 European ancestry never smokers with high FEV1 measurements, 9,748 European ancestry heavy smokers with low FEV1 measurements, 4,906 European ancestry heavy smokers with high FEV1 measurements	NA	4q35.2	NR	rs145334889-?	NR	3E-7				Affymetrix [28509962] (imputed)	N
2014	chr4	187338334	187338335	rs11935103	22760553	Adkins DE	2012-07-03	Transl Psychiatry	Genome-wide pharmacogenomic study of citalopram-induced side effects in STAR*D.	Response to citalopram treatment	1,392 European ancestry depression cases, 264 African American depression cases, 106 depression cases	NA	4q35.2	intergenic	rs11935103-T	NR	2E-6	(EA - GSE)			Affymetrix [421789]	N
2014	chr4	187338334	187338335	rs11935103	22760553	Adkins DE	2012-07-03	Transl Psychiatry	Genome-wide pharmacogenomic study of citalopram-induced side effects in STAR*D.	Response to citalopram treatment	1,392 European ancestry depression cases, 264 African American depression cases, 106 depression cases	NA	4q35.2	intergenic	rs11935103-T	0.262	1E-6	(EA + AA - GSE)			Affymetrix [421789]	N
2014	chr4	187340586	187340587	rs72712682	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	4q35.2	NR	rs72712682-G	NR	6E-6	(GEE model)	0.58942	[0.33-0.85] unit decrease	NR [NR] (imputed)	N
2014	chr4	187378837	187378838	rs62348873	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical thickness (MOSTest)	26,502 European ancestry individuals	NA	4q35.2	INTS3, SLC27A3, GATAD2B, DENND4B, CRTC2, SLC39A1, CREB3L4, JTB, RAB13, RPS27, NUP210L, TPM3, C1orf189, C1orf43, UBAP2L, HAX1	rs62348873-?		4E-13				NR [7428630] (imputed)	N
2014	chr4	187381360	187381361	rs59793765	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	4q35.2		rs59793765-?	NR	2E-49				NR [9705931] (imputed)	N
2014	chr4	187382293	187382294	rs12506228	28364478	Sulkava S	2016-10-10	Sleep	Common Genetic Variation Near Melatonin Receptor 1A Gene Linked to Job-Related Exhaustion in Shift Workers.	Job-related exhaustion in shift workers	176 Finnish ancestry individuals	577 Finnish ancestry individuals	4q35.2	MTNR1A	rs12506228-A	NR	5E-8		0.29	[0.19-0.39] unit increase	Illumina [NR]	N
2014	chr4	187384017	187384018	rs62348889	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	8,072 individuals	NA	4q35.2		rs62348889-T	0.15	8E-8				NR [13131314] (imputed)	N
2014	chr4	187384017	187384018	rs62348889	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	4q35.2		rs62348889-T	0.15	3E-139		25.12	z score increase	Affymetrix [9061022] (imputed)	N
2014	chr4	187384017	187384018	rs62348889	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	4q35.2		rs62348889-T	0.15	2E-61		16.55	z score increase	Affymetrix [9061022] (imputed)	N
2014	chr4	187384017	187384018	rs62348889	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	4q35.2		rs62348889-T	0.15	3E-45		14.12	z score increase	Affymetrix [9061022] (imputed)	N
2014	chr4	187384017	187384018	rs62348889	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	4q35.2	NR	rs62348889-T	0.1536	1E-17				NR [9056863] (imputed)	N
2014	chr4	187384017	187384018	rs62348889	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	4q35.2	NR	rs62348889-T	0.1536	1E-17				NR [9056863] (imputed)	N
2014	chr4	187384017	187384018	rs62348889	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	4q35.2	C2orf73	rs62348889-?		5E-12				NR [7428630] (imputed)	N
2014	chr4	187384017	187384018	rs62348889	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	4q35.2	RP11-215A19.2	rs62348889-?		5E-26				NR [7428630] (imputed)	N
2014	chr4	187385347	187385348	rs149130695	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 157,769 European ancestry controls	NA	4q35.2	NR	rs149130695-?	NR	8E-7		0.1174	[0.071-0.164] unit decrease	Affymetrix, Illumina [12923718] (imputed)	N
2014	chr4	187390022	187390023	rs62348895	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	4q35.2	C2orf73	rs62348895-?		2E-11				NR [7428630] (imputed)	N
2014	chr4	187412366	187412367	rs713224	26997408	Demirkan A	2016-03-21	Psychol Med	Somatic, positive and negative domains of the Center for Epidemiological Studies Depression (CES-D) scale: a meta-analysis of genome-wide association studies.	Depressive symptoms measurement (somatic complaints domain)	1,107 Erasmus Rucphen (founder/genetic isolate) individuals, 31,421 European ancestry individuals	6,813 European ancestry individuals	4q35.2	MTNR1A	rs713224-?	NR	1E-6				Affymetrix, Illumina [at least 1069063] (imputed)	N
2015	chr4	187479919	187479920	rs13114144	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (severe respiratory symptoms vs population)	1,128 European ancestry cases, 679,531 European ancestry controls, 245 Hispanic or Latin American cases, 94,237 Hispanic or Latin American controls, 74 Black or African American cases, 22,383 Black or African American controls	NA	4q35.2		rs13114144-?	NR	1E-6		0.8200182	[0.49-1.15] unit decrease	Illumina [9906551] (imputed)	N
2015	chr4	187479919	187479920	rs13114144	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid pneumonia vs population)	1,004 European ancestry cases, 680,354 European ancestry controls, 218 Hispanic or Latin American cases, 94,318 Hispanic or Latin American controls, 64 Black or African American cases, 22,412 Black or African American controls	NA	4q35.2		rs13114144-?	NR	5E-6		0.8150307	[0.47-1.16] unit decrease	Illumina [9901720] (imputed)	N
2015	chr4	187534688	187534689	rs2584351	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	4q35.2	FAT1	rs2584351-T	0.575551	2E-10		0.014379367	[0.0099-0.0188] unit increase	Affymetrix [93095623] (imputed)	N
2015	chr4	187535062	187535063	rs2584350	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	4q35.2	FAT1	rs2584350-C	0.575778	3E-11		0.015051292	[0.011-0.019] unit increase	Affymetrix [93095623] (imputed)	N
2015	chr4	187535062	187535063	rs2584350	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	4q35.2	FAT1	rs2584350-C	0.575784	2E-10		0.014376625	[0.01-0.0188] unit increase	Affymetrix [93095623] (imputed)	N
2015	chr4	187543526	187543527	rs11726072	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls, 49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	4q35.2		rs11726072-A	NR	3E-8		0.0679	[0.044-0.092] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
2015	chr4	187543526	187543527	rs11726072	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls	NA	4q35.2	FAT1	rs11726072-A	0.122139	3E-8		0.06785178	[0.044-0.092] unit decrease	Affymetrix [7288503] (imputed)	N
2015	chr4	187552575	187552576	rs56390503	29317602	Hall LS	2018-01-10	Transl Psychiatry	Genome-wide meta-analyses of stratified depression in Generation Scotland and UK Biobank.	Major depressive disorder	6,997 European ancestry female cases, 16,172 European ancestry female controls, 3,852 European ancestry male cases, 16,034 European ancestry male controls	NA	4q35.2	FAT1	rs56390503-T	0.11	9E-7		0.13	[0.071-0.189] unit increase	Affymetrix, Illumina [7105178] (imputed)	N
2016	chr4	187623098	187623099	rs74772720	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	4q35.2	FAT1	rs74772720-A	0.1428	5E-15		0.7261	[0.54-0.91] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
2016	chr4	187627592	187627593	rs3733409	30046033	van Setten J	2018-07-25	Nat Commun	PR interval genome-wide association meta-analysis identifies 50 loci associated with atrial and atrioventricular electrical activity.	PR interval	92,340 European ancestry individuals	NA	4q35.2	FAT1	rs3733409-T	0.13	3E-8		0.9	[0.57-1.23] ms increase	Affymetrix, Illumina [2712613] (imputed)	N
2016	chr4	187639282	187639283	rs327098	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	4q35.2		rs327098-?	NR	1E-9				NR [~ 8900000] (imputed)	N
2016	chr4	187639282	187639283	rs327098	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	4q35.2		rs327098-?	NR	1E-10		0.0169416	[0.012-0.022] unit decrease	Affymetrix [20259828] (imputed)	N
2016	chr4	187640835	187640836	rs327102	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	4q35.2	FAT1	rs327102-T	0.862281	6E-9		0.0155842	[0.01-0.021] unit decrease	NR [13737936] (imputed)	N
2016	chr4	187655803	187655804	rs147147685	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GALNT10	5,363 Icelandic ancestry individuals	NA	4q35.2		rs147147685-T	0.0122	5E-13		0.128949	[0.094-0.164] unit increase	Illumina [7506463] (imputed)	N
2016	chr4	187656128	187656129	rs62342738	31630189	Casanova F	2019-10-20	Hum Mol Genet	A genome-wide association study implicates multiple mechanisms influencing raised urinary albumin-creatinine ratio.	Urinary albumin-to-creatinine ratio	437,027 European ancestry individuals	60,130 individuals	4q35.2	FAT1	rs62342738-C	0.181	6E-9	(EA)	0.015	[0.0091-0.0209] unit increase	NR [12082474] (imputed)	N
2016	chr4	187678865	187678866	rs925642	21552555	Wang K	2011-04-28	PLoS One	A genome-wide association study on obesity and obesity-related traits.	Obesity	520 European ancestry cases, 540 European ancestry controls	1,196 European ancestry individuals	4q35.2	FAT1, MTNR1A	rs925642-?	NR	7E-6	(obesity)			Illumina [~ 550000]	N
2017	chr4	187695430	187695431	rs1533320	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	4q35.2	FAT1, LINC02374	rs1533320-?	NR	4E-8		0.4377	[0.28-0.6] unit increase	Affymetrix [11100000] (imputed)	N
2017	chr4	187715913	187715914	rs112684838	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	4q35.2	NR	rs112684838-?	NR	3E-6		4.693	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
2017	chr4	187723316	187723317	rs369583	28282560	Pott J	2017-02-24	Atherosclerosis	Genome-wide meta-analysis identifies novel loci of plaque burden in carotid artery.	Carotid plaque burden	7,189 European ancestry individuals	NA	4q35.2	FAT1	rs369583-C	NR	9E-6		0.122034214	[0.068-0.176] unit increase	Affymetrix [9576485] (imputed)	N
2017	chr4	187743085	187743086	rs75718659	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	4q35.2	FAT1	rs75718659-T	NR	4E-7	(between families)	5.052	unit increase	Affymetrix [up to 15107142] (imputed)	N
2017	chr4	187747131	187747132	rs62344821	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	4q35.2		rs62344821-?	NR	3E-8				NR [~ 8900000] (imputed)	N
2017	chr4	187759001	187759002	rs10000282	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	4q35.2		rs10000282-C	NR	2E-8		0.0188	[0.012-0.025] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
2017	chr4	187759001	187759002	rs10000282	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	4q35.2		rs10000282-C	NR	3E-8		0.019	[0.012-0.026] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
2017	chr4	187762235	187762236	rs62344826	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	4q35.2	NR	rs62344826-A	0.087082	1E-10		0.021126	[0.015-0.028] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
2017	chr4	187811193	187811194	rs115308456	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	4q35.2	intergenic	rs115308456-T		2E-10		0.03	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
2017	chr4	187815358	187815359	rs430549	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	4q35.2	RP11-11N5.1, RP11-11N5.3	rs430549-A	0.815822	9E-11		0.018770143	[0.013-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
2017	chr4	187815358	187815359	rs430549	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	4q35.2	RP11-11N5.1, RP11-11N5.3	rs430549-A	0.815888	1E-9		0.017545976	[0.012-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
2017	chr4	187815358	187815359	rs430549	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	4q35.2	RP11-11N5.1, RP11-11N5.3	rs430549-A	0.815892	2E-10		0.018282626	[0.013-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
2017	chr4	187818255	187818256	rs370915	22179738	Lai HM	2011-12-16	Rheumatology (Oxford)	Gout and type 2 diabetes have a mutual inter-dependent effect on genetic risk factors and higher incidences.	Gout	20 Han Chinese ancestry male gout cases, 42 Han Chinese ancestry male controls	NA	4q35.2	Carboxyl peptidase E	rs370915-?		1E-7				Illumina [479403]	N
2018	chr4	187904042	187904043	rs4862750	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	4q35.2	NR	rs4862750-?	NR	6E-6				Illumina [at least 7383741] (imputed)	N
2018	chr4	187912809	187912810	rs13131381	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Fibroblast growth factor basic levels	7,565 Finnish ancestry individuals	NA	4q35.2	NR	rs13131381-C		8E-6		0.1163	[0.065-0.167] SD units decrease	NR [10700000] (imputed)	N
2018	chr4	187921498	187921499	rs7660345	24399259	He L	2014-01-07	Nat Commun	Two new susceptibility loci 1q24.2 and 11p11.2 confer risk to severe acne.	Acne (severe)	1,031 Han Chinese ancestry cases, 1,031 Han Chinese ancestry controls	1,860 Han Chinese ancestry cases, 3,660 Han Chinese ancestry controls	4q35.2	NR	rs7660345-T	0.3103	3E-6	(fixed effect model)	1.19	[NR]	Illumina [809305]	N
2019	chr4	187977376	187977377	rs13133952	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	4q35.2	RP11-696F12.1	rs13133952-T	0.231261	6E-10		0.016385313	[0.011-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
2019	chr4	187978155	187978156	rs7437152	33610756	Gao H	2021-02-18	Mitochondrion	A Genome-Wide Association Study in Human Lymphoblastoid Cells Supports Safety of Mitochondrial Complex I Inhibitor.	tricyclic pyrone compound response (IC50)	36 African American lymphoblastoid cell lines, 84 European ancestry lymphoblastoid cell lines, 76 Han Chinese ancestry lymphoblastoid cell lines	NA	4q35.2	RP11-696F12.1	rs7437152-?	NR	4E-6				Affymetrix, Illumina [1184972]	N
2019	chr4	187978588	187978589	rs4476657	33610756	Gao H	2021-02-18	Mitochondrion	A Genome-Wide Association Study in Human Lymphoblastoid Cells Supports Safety of Mitochondrial Complex I Inhibitor.	tricyclic pyrone compound response (IC50)	36 African American lymphoblastoid cell lines, 84 European ancestry lymphoblastoid cell lines, 76 Han Chinese ancestry lymphoblastoid cell lines	NA	4q35.2	RP11-696F12.1	rs4476657-?	NR	5E-6				Affymetrix, Illumina [1184972]	N
2019	chr4	187980879	187980880	rs4241838	33610756	Gao H	2021-02-18	Mitochondrion	A Genome-Wide Association Study in Human Lymphoblastoid Cells Supports Safety of Mitochondrial Complex I Inhibitor.	tricyclic pyrone compound response (IC50)	36 African American lymphoblastoid cell lines, 84 European ancestry lymphoblastoid cell lines, 76 Han Chinese ancestry lymphoblastoid cell lines	NA	4q35.2	RP11-696F12.1	rs4241838-?	NR	1E-6				Affymetrix, Illumina [1184972]	N
2019	chr4	188022951	188022952	rs148750727	26955885	Lane JM	2016-03-09	Nat Commun	Genome-wide association analysis identifies novel loci for chronotype in 100,420 individuals from the UK Biobank.	Morning vs. evening chronotype	8,724 European ancestry evening chronotype individuals, 26,948 European ancestry morning chronotype individuals	NA	4q35.2	FAT1	rs148750727-T	0.995	2E-8		2.34	[1.69-3.23]	Affymetrix [73355677] (imputed)	N
2019	chr4	188022951	188022952	rs148750727	26955885	Lane JM	2016-03-09	Nat Commun	Genome-wide association analysis identifies novel loci for chronotype in 100,420 individuals from the UK Biobank.	Chronotype	100,420 European ancestry individuals	NA	4q35.2	FAT1	rs148750727-T	0.995	4E-6		0.154	[0.089-0.219] unit increase	Affymetrix [~ 73355677] (imputed)	N
2020	chr4	188098461	188098462	rs115456368	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,963 Sub-Saharan African ancestry females, 3,931 Sub-Saharan African ancestry males	NA	4q35.2		rs115456368-C	0.968458	1E-5		0.016224	[0.002-0.0305] unit decrease	Illumina [7666802] (imputed)	N
2020	chr4	188121288	188121289	rs116150367	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mononucleosis	17,457 European ancestry cases, 68,446 European ancestry controls	NA	4q35.2	NR	rs116150367-?	NR	9E-6		0.211	[0.12-0.31] unit decrease	Illumina [at least 560000] (imputed)	N
2020	chr4	188125012	188125013	rs9790438	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Pericalcarine cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	4q35.2	NR	rs9790438-?		2E-6				Illumina [4322238] (imputed)	N
2020	chr4	188140317	188140318	rs35290534	31219150	Ekenberg C	2019-06-13	J Infect Dis	Single nucleotide polymorphisms in HLA alleles are associated with HIV-1 viral load in demographically diverse, ART-naive participants from the START trial.	Pre-treatment viral load in HIV-1 infection	1,398 European ancestry individuals, 572 Black individuals, 418 Hispanic individuals, 13 Asian ancestry individuals, 39 individuals	NA	4q35.2	intergenic	rs35290534-C	0.41	6E-16		0.19	[0.15-0.24] unit increase	Affymetrix [339439]	N
2020	chr4	188166017	188166018	rs34846424	32279069	Rovira P	2020-04-12	Neuropsychopharmacology	Shared genetic background between children and adults with attention deficit/hyperactivity disorder.	Attention deficit hyperactivity disorder (persistent)	6,532 European ancestry cases, 15,874 European ancestry controls	NA	4q35.2	NR	rs34846424-T	0.36	4E-6		1.11	[1.06-1.16]	Illumina [~ 1113287] (imputed)	N
2020	chr4	188170466	188170467	rs11726022	26752167	Taylor JY	2016-01-11	Sci Rep	A Genome-wide study of blood pressure in African Americans accounting for gene-smoking interaction.	Systolic blood pressure (cigarette smoking interaction)	1,083 African American individuals	1,427 African American individuals	4q35.2	LOC339975	rs11726022-G	0.149	2E-6				Affymetrix [761050]	N
2020	chr4	188191305	188191306	rs4478239	33657282	Liu X	2021-03-03	Aging Cell	Integrated genetic analyses revealed novel human longevity loci and reduced risks of multiple diseases in a cohort study of 15,651 Chinese individuals.	Longevity	11,045 Chinese ancestry individuals	NA	4q35.2	NR	rs4478239-C	NR	1E-6		0.2154	[0.13-0.3] unit increase	Affymetrix, Illumina [NR] (imputed)	N
2020	chr4	188191305	188191306	rs4478239	22472876	Sullivan PF	2012-04-03	Mol Psychiatry	A mega-analysis of genome-wide association studies for major depressive disorder.	Major depressive disorder	9,240 European ancestry cases, 9,519 European ancestry controls	6,783 European ancestry cases, 50,695 European ancestry controls	4q35.2	intergenic	rs4478239-?	NR	5E-6				Affymetrix, Illumina, Perlegen [~ 1200000] (imputed)	N
2020	chr4	188210591	188210592	rs11935448	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q35.2	NR	rs11935448-C	0.01394	2E-9	(FTH1)	0.1512	NR unit increase	Illumina [1671387] (imputed)	N
2021	chr4	188300375	188300375	rs199852994	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	4q35.2	NR	rs199852994-?	NR	6E-6	(female)	1.1899	[0.67-1.71] unit decrease	Illumina [11133794] (imputed)	N
2021	chr4	188308254	188308255	rs72723271	28322283	Chibnik LB	2017-03-21	Mol Psychiatry	Susceptibility to neurofibrillary tangles: role of the PTPRD locus and limited pleiotropy with other neuropathologies.	Neuropathologic traits (pleiotropy)	909 European ancestry individuals	369 individuals	4q35.2	NR	rs72723271-T	0.94	2E-6	(EA)			Affymetrix, Illumina [NR] (imputed)	N
2021	chr4	188310654	188310655	rs8180282	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	4q35.2		rs8180282-?	NR	9E-12				NR [~ 8900000] (imputed)	N
2021	chr4	188340933	188340934	rs144759451	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	4q35.2	NR	rs144759451-T	NR	9E-6	(female)	1.2217	[0.68-1.76] unit decrease	Illumina [11133794] (imputed)	N
2021	chr4	188345367	188345368	rs1431005	20339536	Barber MJ	2010-03-22	PLoS One	Genome-wide association of lipid-lowering response to statins in combined study populations.	Response to statin therapy	3,928 European ancestry individuals	NA	4q35.2	LOC644282, LOC644325, MRPS36P2	rs1431005-A	0.4	2E-7	(LDL, diff)			Illumina [~ 2500000] (imputed)	N
2022	chr4	188400536	188400537	rs145440507	31164008	Mullins N	2019-06-05	Am J Psychiatry	GWAS of Suicide Attempt in Psychiatric Disorders and Association With Major Depression Polygenic Risk Scores.	Suicide attempts in major depressive disorder	1,622 European ancestry attempters, 8,786 European ancestry nonattempters	NA	4q35.2	NR	rs145440507-T	0.010000000000000009	1E-6		2.7027025	[1.82-4]	NR [8482392] (imputed)	N
2024	chr4	188614757	188614758	rs1394866	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	4q35.2	NR	rs1394866-A	0.0941	4E-6	(Trans/trans-18:2, EA)	0.002	[0.0012-0.0028] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
2024	chr4	188614907	188614908	rs10034736	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	4q35.2	NR	rs10034736-T	0.0934	4E-6	(Trans/trans-18:2, EA)	0.002	[0.0012-0.0028] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
2024	chr4	188615041	188615042	rs10034852	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	4q35.2	NR	rs10034852-T	0.0909	5E-6	(Trans/trans-18:2, EA)	0.002	[0.0012-0.0028] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
2024	chr4	188615112	188615113	rs10012750	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	4q35.2	NR	rs10012750-A	0.9098	5E-6	(Trans/trans-18:2, EA)	0.002	[0.0012-0.0028] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
2024	chr4	188615606	188615607	rs9992966	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	4q35.2	NR	rs9992966-T	0.0899	5E-6	(Trans/trans-18:2, EA)	0.002	[0.0012-0.0028] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
2024	chr4	188617323	188617324	rs7694110	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	4q35.2	NR	rs7694110-A	0.911	5E-6	(Trans/trans-18:2, EA)	0.002	[0.0012-0.0028] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
2024	chr4	188617357	188617358	rs7672520	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	4q35.2	NR	rs7672520-T	0.9124	4E-6	(Trans/trans-18:2, EA)	0.002	[0.0012-0.0028] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
2024	chr4	188617868	188617869	rs9714717	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	4q35.2	NR	rs9714717-A	0.0866	4E-6	(Trans/trans-18:2, EA)	0.0021	[0.0013-0.0029] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
2024	chr4	188618035	188618036	rs13149971	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	4q35.2	NR	rs13149971-T	0.9154	4E-6	(Trans/trans-18:2, EA)	0.0021	[0.0011-0.0031] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
2024	chr4	188618924	188618925	rs10030764	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	4q35.2	NR	rs10030764-T	0.0867	3E-6	(Trans/trans-18:2, EA)	0.0021	[0.0011-0.0031] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
2024	chr4	188619448	188619449	rs10031224	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	4q35.2	NR	rs10031224-T	0.0866	4E-6	(Trans/trans-18:2, EA)	0.0021	[0.0011-0.0031] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
2024	chr4	188619699	188619700	rs2174496	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	4q35.2	NR	rs2174496-A	0.9135	3E-6	(Trans/trans-18:2, EA)	0.0021	[0.0011-0.0031] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
2024	chr4	188619970	188619971	rs6836250	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	4q35.2	NR	rs6836250-A	0.0863	3E-6	(Trans/trans-18:2, EA)	0.0021	[0.0011-0.0031] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
2024	chr4	188620343	188620344	rs6836750	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	4q35.2	NR	rs6836750-A	0.0858	3E-6	(Trans/trans-18:2, EA)	0.0022	[0.0012-0.0032] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
2024	chr4	188620382	188620383	rs6836899	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	4q35.2	NR	rs6836899-T	0.0857	3E-6	(Trans/trans-18:2, EA)	0.0022	[0.0012-0.0032] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
2024	chr4	188620750	188620751	rs2376264	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	4q35.2	NR	rs2376264-C	0.9143	3E-6	(Trans/trans-18:2, EA)	0.0022	[0.0012-0.0032] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
2024	chr4	188620908	188620909	rs2376265	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	4q35.2	NR	rs2376265-A	0.0863	4E-6	(Trans/trans-18:2, EA)	0.0023	[0.0013-0.0033] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
2024	chr4	188623954	188623955	rs13103223	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	4q35.2	NR	rs13103223-T	0.9142	3E-6	(Trans/trans-18:2, EA)	0.0023	[0.0013-0.0033] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
2024	chr4	188624394	188624395	rs10014313	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	4q35.2	NR	rs10014313-T	0.9143	3E-6	(Trans/trans-18:2, EA)	0.0023	[0.0013-0.0033] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
2024	chr4	188624665	188624666	rs6821057	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	4q35.2	NR	rs6821057-C	0.9144	3E-6	(Trans/trans-18:2, EA)	0.0023	[0.0013-0.0033] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
2024	chr4	188624961	188624962	rs6821987	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	4q35.2	NR	rs6821987-C	0.0855	3E-6	(Trans/trans-18:2, EA)	0.0023	[0.0013-0.0033] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
2024	chr4	188716735	188716736	rs6849009	28843169	Neumann A	2017-08-12	Psychoneuroendocrinology	The low single nucleotide polymorphism heritability of plasma and saliva cortisol levels.	Cortisol levels (saliva)	7,703 European ancestry individuals	NA	4q35.2	ZFP42	rs6849009-T	0.27	8E-6		0.11	[0.071-0.149] unit increase	Illumina, Perlegen [2156702] (imputed)	N
2024	chr4	188721511	188721512	rs4470690	26821981	Koga AT	2016-01-28	J Neural Transm (Vienna)	Genome-wide association analysis to predict optimal antipsychotic dosage in schizophrenia: a pilot study.	antipsychotic drug dosage in schizophrenia or schizoaffective disorder	up to 39 European ancestry schizophrenia cases, up to 40 European ancestry schizoaffective cases	NA	4q35.2	intergenic	rs4470690-C	NR	4E-6	(DDD)	0.2568	[NR] unit increase	Illumina [1190033]	N
2024	chr4	188721511	188721512	rs4470690	26821981	Koga AT	2016-01-28	J Neural Transm (Vienna)	Genome-wide association analysis to predict optimal antipsychotic dosage in schizophrenia: a pilot study.	antipsychotic drug dosage in schizophrenia or schizoaffective disorder	up to 39 European ancestry schizophrenia cases, up to 40 European ancestry schizoaffective cases	NA	4q35.2	NR	rs4470690-C	NR	7E-8	(PM %)	0.2959	[NR] unit increase	Illumina [1190033]	N
2025	chr4	188841050	188841051	rs180767284	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	4q35.2		rs180767284-T	NR	3E-6		3.3362	[1.96-4.71] unit increase	Illumina [NR] (imputed)	N
2025	chr4	188841485	188841486	rs28375794	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	4q35.2	LOC644325, LOC389249	rs28375794-G	0.033	1E-6		3.76	[2.12-6.66]	Illumina [1556551]	N
2025	chr4	188842147	188842148	rs9990514	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	4q35.2	Intergenic	rs9990514-C	0.719	8E-8	(AA)	0.15	NR unit increase	Illumina [NR] (imputed)	N
2025	chr4	188847426	188847427	rs6825162	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	4q35.2	Intergenic	rs6825162-C	0.712	6E-7	(AA)	0.136	NR unit increase	Illumina [NR] (imputed)	N
2026	chr4	188911841	188911842	rs6836268	34050765	Zhang L	2021-05-29	J Clin Endocrinol Metab	Joint genome-wide association analyses identified 49 novel loci for age at natural menopause.	Age at menopause	181,219 European ancestry individuals, 43,861 East Asian ancestry individuals	NA	4q35.2		rs6836268-T	0.63	3E-10		0.09	unit increase	Illumina [2093892] (imputed)	N
2026	chr4	188911841	188911842	rs6836268	34050765	Zhang L	2021-05-29	J Clin Endocrinol Metab	Joint genome-wide association analyses identified 49 novel loci for age at natural menopause.	Age at menopause	181,219 European ancestry individuals	NA	4q35.2		rs6836268-T	0.63	2E-9		0.09	unit increase	Illumina [2398641] (imputed)	N
2026	chr4	188921354	188921355	rs6837349	28604732	Wang Z	2017-06-12	Nat Genet	Meta-analysis of five genome-wide association studies identifies multiple new loci associated with testicular germ cell tumor.	Testicular germ cell tumor	3,558 European ancestry cases, 13,970 European ancestry controls	NA	4q35.2	ZFP42	rs6837349-G	0.32	3E-8		1.19	[1.12-1.27]	Illumina [9210350] (imputed)	N
2026	chr4	188921439	188921440	rs4862848	28604728	Litchfield K	2017-06-12	Nat Genet	Identification of 19 new risk loci and potential regulatory mechanisms influencing susceptibility to testicular germ cell tumor.	Testicular germ cell tumor	5,518 European ancestry cases, 19,055 European ancestry controls	1,801 European ancestry cases, 4,027 European ancestry controls	4q35.2	ZFP42	rs4862848-G	0.35	2E-12		1.21	[1.16-1.27]	Illumina [at least 371504] (imputed)	N
2026	chr4	188921814	188921815	rs73019319	30942860	Shin J	2019-04-03	J Clin Endocrinol Metab	Novel genetic locus of visceral fat and systemic inflammation.	Visceral fat	1589 French-Canadian ancestry individuals	NA	4q35.2	ZFP42	rs73019319-A	NR	2E-6	(adjusted for subcutaneous fat)	0.179	[0.11-0.25] unit decrease	Illumina [8511049] (imputed)	N
2026	chr4	188944729	188944730	rs7673594	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 14, intercanthal width)	2,187 European ancestry individuals	NA	4q35.2	NR	rs7673594-T	0.1881	4E-6		0.1765	[0.1-0.25] unit decrease	Illumina [10677593] (imputed)	N
2026	chr4	188951932	188951933	rs962987	33824429	Fjukstad KK	2021-04-06	Pharmacogenomics J	Genetic variants associated with cardiometabolic abnormalities during treatment with selective serotonin reuptake inhibitors: a genome-wide association study.	LDL levels x SSRI levels (escitalopram or citalopram) interaction in schizophrenia or bipolar disorder	181 European ancestry individuals	NA	4q35.2	ZFP42	rs962987-T	NR	6E-6		2.06139	[1.2-2.92] unit increase	Illumina [NR] (imputed)	N
2026	chr4	188957729	188957730	rs71607975	33831438	Williams JE	2021-04-05	Genomics	Key genetic variants associated with variation of milk oligosaccharides from diverse human populations.	Human milk oligosaccharide concentration (lacto-N-fucopentaose III) in non-secretors	90 European, Sub-Saharan African, Hispanic or unknown ancestry individuals	NA	4q35.2		rs71607975-?	NR	5E-10				Illumina [1128286]	N
2027	chr4	189015401	189015402	rs10031466	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	4q35.2	NR	rs10031466-?	NR	1E-6	(Latino)	0.2396	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
2027	chr4	189114707	189114708	rs60713544	28358823	Kim SK	2017-03-30	PLoS One	Genome-wide association screens for Achilles tendon and ACL tears and tendinopathy.	Achilles tendinopathy	4,258 European ancestry cases, 413 Latin-American cases, 268 East Asian ancestry cases, 192 African American cases, 17 South East Asian ancestry cases, 79,006 European ancestry controls, 8,147 Latin-American controls, 7,250 East Asian ancestry controls, 2,969 African American controls, 459 South East Asian ancestry controls		4q35.2	NR	rs60713544-C	NR	7E-7		1.43	[1.29-1.57]	Affymetrix [10551193] (imputed)	N
2027	chr4	189120910	189120911	rs6857559	23049088	Meng W	2012-10-09	Invest Ophthalmol Vis Sci	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		4q35.2	intergenic	rs6857559-?	0.620	3E-21			[NR]	Affymetrix, Illumina [152234]	N
2028	chr4	189150116	189150117	rs12650036	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	4q35.2	NR	rs12650036-?	NR	3E-8				Affymetrix [NR]	N
2028	chr4	189180958	189180959	rs112226039	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	4q35.2	NR	rs112226039-?	NR	7E-8		0.1868	[NR] unit increase	Illumina [up to 11892802] (imputed)	N
2028	chr4	189191110	189191111	rs71607999	24528284	Ji Y	2014-08-01	Br J Clin Pharmacol	Citalopram and escitalopram plasma drug and metabolite concentrations: genome-wide associations.	Response to serotonin reuptake inhibitors in major depressive disorder (plasma drug and metabolite levels)	300 European ancestry Escitalpram treated individuals, 130 European ancestry Citalopram treated individuals	NA	4q35.2	TRIML1	rs71607999-?	0.165	7E-9	(S-DCT/S-CT ratio, adjusted for CYP2C19)			Illumina [7537437] (imputed)	N
2028	chr4	189253123	189253124	rs57287700	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-like 1 protein levels	252 European ancestry individuals	NA	4q35.2		rs57287700-G	NR	7E-6		0.11869	[0.068-0.169] unit increase	Illumina [NR] (imputed)	N
2029	chr4	189319694	189319695	rs146081732	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Alcohol consumption x traumatic event in childhood (felt hated by family member) interaction	46,394 European ancestry individuals	NA	4q35.2		rs146081732-?	NR	3E-8		2.1079	[1.36-2.85] unit increase	Affymetrix [NR] (imputed)	N
2029	chr4	189371243	189371244	rs2292434	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	4q35.2	FLJ25801	rs2292434-?	NR	3E-6	(xanthosine)	0.2387605	[0.14-0.34] unit increase	Affymetrix [at least 2500000] (imputed)	N
2029	chr4	189391583	189391584	rs74629928	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,931 Sub-Saharan African ancestry males	NA	4q35.2		rs74629928-T	0.964837	8E-6		0.0334666	[0.018-0.049] unit decrease	Illumina [13900000] (imputed)	N
2029	chr4	189397673	189397674	rs4863329	34130359	Curtis SW	2021-06-15	Genet Epidemiol	FAT4 identified as a potential modifier of orofacial cleft laterality.	Right unilateral cleft lip and palate	59 Asian ancestry cases, 94 European ancestry cases, 263 Hispanic cases, 1,626 controls	NA	4q35.2	NR	rs4863329-?		1E-6		1.59	[1.32-1.93]	Illumina [539473] (imputed)	N
2030	chr4	189428342	189428343	rs116330320	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Logical memory (delayed recall) in normal cognition	305 European ancestry cognitively normal individuals	NA	4q35.2	RPL7AP27, HSP90AA4P	rs116330320-T	0.03	3E-7		0.84	[0.53-1.15] unit increase	Illumina [7797256] (imputed)	N
2030	chr4	189498063	189498064	rs7666129	25574032	Lee H	2015-01-08	Hum Reprod	Genome-wide association study identified new susceptibility loci for polycystic ovary syndrome.	Polycystic ovary syndrome	976 Korean ancestry cases, 946 Korean ancestry controls	249 Korean ancestry cases, 778 Korean ancestry controls	4q35.2	TRIML1, TRIML2	rs7666129-A	0.75	6E-6		1.59	[NR]	Illumina [636870]	N
2030	chr4	189509795	189509796	rs10010152	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Word reading	3,468 European ancestry individuals	NA	4q35.2	LINC01060	rs10010152-G	0.127306667	7E-7		0.291429	unit decrease	Illumina [6969139] (imputed)	N
2030	chr4	189509795	189509796	rs10010152	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Reading ability (multivariate)	up to 3,468 European ancestry individuals	NA	4q35.2	NR	rs10010152-?		4E-6				Illumina [up to 6969139] (imputed)	N
2031	chr4	189555946	189555947	rs7698718	28763429	Serie DJ	2017-07-31	Pharmacogenet Genomics	Genome-wide association study of cardiotoxicity in the NCCTG N9831 (Alliance) adjuvant trastuzumab trial.	Change in LVEF in response to paclitaxel and trastuzumab in HER2+ breast cancer	800 European ancestry cases	NA	4q35.2	LINC01060	rs7698718-?	NR	8E-6		1.78	[1.01-2.56] unit increase	Affymetrix [618793]	N
2031	chr4	189565169	189565170	rs6834498	24489884	Mick E	2014-01-01	PLoS One	Genome-wide association study of proneness to anger.	Anger	8,747 European ancestry individuals	NA	4q35.2	intergenic	rs6834498-A	0.181	5E-6	(Temperament)	0.16	[NR] unit decrease	Affymetrix [677643]	N
2031	chr4	189584352	189584353	rs7686384	30004843	Ge S	2018-07-01	OMICS	Type 2 Diabetes Mellitus: Integrative Analysis of Multiomics Data for Biomarker Discovery.	Elevated fasting plasma glucose	76 Chinese ancestry cases, 435 Chinese ancestry controls	NA	4q35.2	RPL7AP27	rs7686384-G	0.1424	9E-6		1.937	[1.592-2.282]	Illumina [69485]	N
2031	chr4	189584352	189584353	rs7686384	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	4q35.2	RPL7AP27	rs7686384-A	0.129	6E-6	(Cortisol )	0.01	[NR] ng/mL increase	Illumina [899892]	N
2031	chr4	189587078	189587079	rs7659062	20125193	Cirulli ET	2010-02-03	Eur J Hum Genet	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American individuals, up to 74 South Asian ancestry individuals	NA	4q35.2	AC093909.2	rs7659062-?	NR	9E-6	(Immediate Story Recall)			Illumina [up to 563855]	N
2031	chr4	189587078	189587079	rs7659062	20125193	Cirulli ET	2010-02-03	Eur J Hum Genet	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American individuals, up to 74 South Asian ancestry individuals	NA	4q35.2	AC093909.2	rs7659062-?	NR	8E-6	(Delayed Story Recall)			Illumina [up to 563855]	N
2031	chr4	189590858	189590859	rs7662358	20125193	Cirulli ET	2010-02-03	Eur J Hum Genet	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American individuals, up to 74 South Asian ancestry individuals	NA	4q35.2	AC093909.2	rs7662358-?	NR	9E-6	(Immediate Story Recall)			Illumina [up to 563855]	N
2031	chr4	189590858	189590859	rs7662358	20125193	Cirulli ET	2010-02-03	Eur J Hum Genet	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American individuals, up to 74 South Asian ancestry individuals	NA	4q35.2	AC093909.2	rs7662358-?	NR	8E-6	(Delayed Story Recall)			Illumina [up to 563855]	N
2031	chr4	189604043	189604044	rs62341342	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 2 levels	252 European ancestry individuals	NA	4q35.2		rs62341342-G	NR	8E-6		0.97347	[0.56-1.39] unit decrease	Illumina [NR] (imputed)	N
2031	chr4	189628998	189628999	rs6815218	27005419	Borne Y	2016-03-22	Hum Mol Genet	Genome wide association study identifies two loci associated with cadmium in erythrocytes among never-smokers.	Erythrocyte cadmium concentration	2,704 ever-smoker individuals, 1,728 never-smoker individuals	NA	4q35.2	HSPA8P12	rs6815218-C	0.05596	5E-6		0.1728	[NR] unit increase	Illumina [658884]	N
2032	chr4	189695440	189695441	rs376503875	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	4q35.2	RP11-756P10.4	rs376503875-T	0.9964	2E-6		0.5159	[0.3-0.73] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
2033	chr4	189811356	189811357	rs7674523	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Rostral middle frontal gyrus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	4q35.2	NR	rs7674523-?		1E-6				Illumina [4322238] (imputed)	N
2033	chr4	189811356	189811357	rs7674523	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Medial orbital frontal cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	4q35.2	NR	rs7674523-?		3E-6				Illumina [4322238] (imputed)	N
2033	chr4	189826650	189826651	rs62343714	26030696	Cho MH	2015-06-01	Am J Respir Crit Care Med	A Genome-Wide Association Study of Emphysema and Airway Quantitative Imaging Phenotypes.	Emphysema imaging phenotypes	5,385 European ancestry chronic obstructive pulmonary disease cases, 901 African American chronic obstructive pulmonary disease cases, 3,613 European ancestry controls, 2,132 African American controls	NA	4q35.2	LOC401164	rs62343714-T	NR	1E-6	(%LAA-950, All)	0.12	[0.049-0.191] unit increase	Illumina [7600000] (imputed)	N
2033	chr4	189833278	189833279	rs6813033	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	4q35.2		rs6813033-?	NR	1E-6		0.947806	[0.93-0.97]	NR [685523]	N
2033	chr4	189861250	189861251	rs11731175	23453885	Smoller JW	2013-02-27	Lancet	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NA	4q35.2	intergenic	rs11731175-T		5E-6	(Modelling analysis)	1.06	[1.03-1.09]	NR [1252901] (imputed)	N
2033	chr4	189869232	189869233	rs3900502	30552317	Guo W	2018-12-14	Transl Psychiatry	Exploratory genome-wide association analysis of response to ketamine and a polygenic analysis of response to scopolamine in depression.	Response to ketamine in bipolar disorder or major depression (dissociation effects)	90 European ancestry individuals	NA	4q35.2	Intergenic	rs3900502-C	0.4877	6E-6		12.2832	[7.36-17.21] unit decrease	Illumina [~ 6000000] (imputed)	N
2033	chr4	189893312	189893313	rs12647478	32581322	Kakuta Y	2020-06-24	Sci Rep	An Integrated Genomic and Transcriptomic Analysis Reveals Candidates of Susceptibility Genes for Crohn's Disease in Japanese Populations.	Crohn's disease	713 Japanese ancestry cases, 2,063 Japanese ancestry controls	NA	4q35.2	intergenic	rs12647478-?	NR	8E-6		1.0869565	[1.05-1.14]	NR [7424691] (imputed)	N
2034	chr4	189935313	189935314	rs36057338	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (genus Oxalobacter id.2978)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	4q35.2		rs36057338-G	NR	9E-7		4.9167776	z score increase	Affymetrix, Illumina [NR] (imputed)	N
2034	chr4	189956898	189956899	rs73875652	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4q35.2	NR	rs73875652-A	0.0122	2E-9	(ISOC2)	0.2398	NR unit increase	Illumina [1671387] (imputed)	N
2034	chr4	189989988	189989989	rs1353581	31055733	Nazarian A	2019-05-05	Geroscience	Genetic heterogeneity of Alzheimer's disease in subjects with and without hypertension.	Alzheimer's disease in hypertension-negative individuals	796 European ancestry cases, 4,010 European ancestry controls	NA	4q35.2	LINC01060	rs1353581-?	0.234	5E-6		1.5384616	[1.43-1.65]	NR [~ 2000000] (imputed)	N
2034	chr4	190050379	190050380	rs74694957	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	4q35.2		rs74694957-?	NR	1E-9				Affymetrix [NR] (imputed)	N
2034	chr4	190053929	190053930	rs4286618	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	4q35.2		rs4286618-?	NR	4E-9				Affymetrix [NR] (imputed)	N
2035	chr4	190055021	190055022	rs79669700	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	4q35.2		rs79669700-?	NR	3E-9				Affymetrix [NR] (imputed)	N
2035	chr4	190058305	190058306	rs147148339	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	4q35.2		rs147148339-?	NR	2E-9				Affymetrix [NR] (imputed)	N
2035	chr4	190058439	190058440	rs368102447	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	4q35.2		rs368102447-?	NR	3E-8				Affymetrix [NR] (imputed)	N
2035	chr4	190123317	190123318	rs7665939	22959728	Ahmeti KB	2012-09-05	Neurobiol Aging	Age of onset of amyotrophic lateral sclerosis is modulated by a locus on 1p34.1.	Amyotrophic lateral sclerosis	4,243 European ancestry cases, 5,112 European ancestry controls	NA	4q35.2	intergenic	rs7665939-?	0.11	9E-6	(Meta)	1.2346	[1.11-1.39]	Illumina [254145]	N
2035	chr4	190150095	190150096	rs11132627	32771030	Tangtanatakul P	2020-08-08	Arthritis Res Ther	Meta-analysis of genome-wide association study identifies FBN2 as a novel locus associated with systemic lupus erythematosus in Thai population.	Systemic lupus erythematosus	487 Thai cases, 1,606 Thai controls	405 Thai cases, 1,590 Thai controls	4q35.2	RP11-706F1.1, RP11-706F1.2	rs11132627-G	0.08	7E-6		0.6493	[NR]	Illumina [421909] (imputed)	N
2035	chr4	190160207	190160208	rs10050304	34737425	Mansour Aly D	2021-11-04	Nat Genet	Genome-wide association analyses highlight etiological differences underlying newly defined subtypes of diabetes.	Mild obesity-related type 2 diabetes	1,374 Scandinavian ancestry cases, 2,744 Scandinavian ancestry controls	NA	4q35.2	MTNR1A, FAT1	rs10050304-C	0.328271	3E-6		1.27	[1.148 - 1.405]	Illumina [5400100] (imputed)	N
2035	chr4	190160825	190160826	rs35192598	32902719	Hebbar P	2020-09-09	Hum Genet	Genome-wide landscape establishes novel association signals for metabolic traits in the Arab population.	High density lipoprotein cholesterol levels	2,732 Kuwaiti ancestry individuals	NA	4q35.2	intergenic	rs35192598-?	NR	1E-8		5.716	NR unit decrease	Illumina [up to 1520000] (imputed)	N
2036	chr4	190186105	190186106	rs200736848	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Antisaccade task score	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	4q35.2	intergenic	rs200736848-T	NR	1E-6		0.12452989	[0.068-0.181] unit decrease	Illumina [> 6200000] (imputed)	N
2036	chr4	190310912	190310913	rs11944525	32902719	Hebbar P	2020-09-09	Hum Genet	Genome-wide landscape establishes novel association signals for metabolic traits in the Arab population.	High density lipoprotein cholesterol levels	2,732 Kuwaiti ancestry individuals	NA	4q35.2	LOC285442, HSP90AA4P	rs11944525-?	NR	2E-7		5.169	NR unit increase	Illumina [up to 1520000] (imputed)	N
2037	chr4	190370211	190370212	rs146905537	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (processing speed) x major depressive disorder interaction (2df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	4q35.2		rs146905537-A	0.99	2E-9				NR [NR] (imputed)	N
2037	chr4	190370211	190370212	rs146905537	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (processing speed)	9,567 European ancestry individuals	NA	4q35.2		rs146905537-A	0.99	3E-6		0.81	[0.48-1.14] unit decrease	NR [NR] (imputed)	N
2037	chr4	190370211	190370212	rs146905537	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (executive function) x major depressive disorder interaction (2df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	4q35.2		rs146905537-A	0.99	7E-9				NR [NR] (imputed)	N
2037	chr4	190370211	190370212	rs146905537	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (executive function) x major depressive disorder interaction (1df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	4q35.2		rs146905537-A	0.99	6E-6		1.44	[0.81-2.07] unit increase	NR [NR] (imputed)	N
2037	chr4	190403651	190403652	rs57805404	31533690	Orlova E	2019-09-18	BMC Oral Health	Pilot GWAS of caries in African-Americans shows genetic heterogeneity.	Dental caries (decayed and filled deciduous teeth)	96 African American children	NA	4q35.2	NR	rs57805404-?		2E-6		3.667	[2.48-4.86] unit increase	Illumina [~ 4900000] (imputed)	N
2037	chr4	190430924	190430925	rs191546174	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid pneumonia vs population)	1,004 European ancestry cases, 680,354 European ancestry controls, 218 Hispanic or Latin American cases, 94,318 Hispanic or Latin American controls, 64 Black or African American cases, 22,412 Black or African American controls	NA	4q35.2		rs191546174-?	NR	5E-6		0.5184948	[0.3-0.74] unit decrease	Illumina [9901720] (imputed)	N
2038	chr4	190538062	190538063	rs13145041	24024966	Teumer A	2013-08-14	J Clin Periodontol	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (CDC/AAP)	up to 3,915 European ancestry individuals	NA	4q35.2	FRG1	rs13145041-A	0.78	7E-7	(Age 20-60 years)	1.65	[1.35-2.00]	Affymetrix, Illumina [up to 17585496] (imputed)	N
2038	chr4	190577993	190577994	rs6553346	29855589	Chernus J	2018-05-31	Sci Rep	GWAS reveals loci associated with velopharyngeal dysfunction.	Velopharyngeal dysfunction	54 Hispanic or Latin American and unknown ancestry cases, 922 Hispanic or Latin American and unknown ancestry controls	NA	4q35.2	NR	rs6553346-?	NR	2E-6		0.078559294	[NR] unit decrease	Illumina [at least 269494] (imputed)	N
2039	chr4	190641169	190641170	rs11132733	22675492	Prescott J	2012-06-04	PLoS One	Genome-wide association study of circulating estradiol, testosterone, and sex hormone-binding globulin in postmenopausal women.	Testosterone levels	1,589 European ancestry female individuals	NA	4q35.2	intergenic	rs11132733-T	0.17	3E-6		0.225	[NR] unit decrease	Illumina [~ 2500000] (imputed)	N
2040	chr4	190717703	190717704	rs114169033	29381699	Ravenhall M	2018-01-30	PLoS Genet	Novel genetic polymorphisms associated with severe malaria and under selective pressure in North-eastern Tanzania.	Severe malaria (adjusted for sickle cell variant rs334)	449 Tanzanian ancestry cases, 465 Tanzanian ancestry controls	NA	4q35.2	AF146191.4-004	rs114169033-?	NR	1E-6	(Additive)		[NR]	Illumina [15200000] (imputed)	N
2040	chr4	190717703	190717704	rs114169033	29381699	Ravenhall M	2018-01-30	PLoS Genet	Novel genetic polymorphisms associated with severe malaria and under selective pressure in North-eastern Tanzania.	Severe malaria	449 Tanzanian ancestry cases, 465 Tanzanian ancestry controls	NA	4q35.2	AF146191.4-004	rs114169033-?	NR	7E-7	(Additive)	3.326	[NR]	Illumina [15200000] (imputed)	N
2040	chr4	190729008	190729009	rs189107782	31630189	Casanova F	2019-10-20	Hum Mol Genet	A genome-wide association study implicates multiple mechanisms influencing raised urinary albumin-creatinine ratio.	Urinary albumin-to-creatinine ratio	437,027 European ancestry individuals	60,130 individuals	4q35.2	FGR1	rs189107782-T	0.002	4E-35	(EA)	0.307	[0.26-0.36] unit increase	NR [12082474] (imputed)	N
2040	chr4	190729008	190729009	rs189107782	30220432	Haas ME	2018-09-06	Am J Hum Genet	Genetic Association of Albuminuria with Cardiometabolic Disease and Blood Pressure.	Urinary albumin excretion (no hypertensive medication)	302,687 European ancestry individuals without hypertensive medication	NA	4q35.2	LINC01262, FRG1	rs189107782-T	0.002	3E-21		0.20163	[0.16-0.24] unit increase	Affymetrix [11709857] (imputed)	N
2040	chr4	190729008	190729009	rs189107782	30220432	Haas ME	2018-09-06	Am J Hum Genet	Genetic Association of Albuminuria with Cardiometabolic Disease and Blood Pressure.	Urinary albumin excretion	382,500 European ancestry individuals	NA	4q35.2	LINC01262, FRG1	rs189107782-T	0.002	1E-33		0.24502	[0.21-0.28] unit increase	Affymetrix [11709857] (imputed)	N
2040	chr4	190746396	190746397	rs113668862	28763065	Xia K	2017-08-01	Transl Psychiatry	Genome-wide association analysis identifies common variants influencing infant brain volumes.	Brain volume in infants (cerebrospinal fluid)	295 European, African American, Asian, Native American and other admixed ancestry infants, 17 European, African American, Asian, Native American and other admixed ancestry sibling pairs, 116 European, African American, Asian, Native American and other admixed ancestry twin pairs.	NA	4q35.2	FRG1	rs113668862-C	NR	6E-7		8.41	percent decrease	Affymetrix [8762422] (imputed)	N
2040	chr4	190769222	190769223	rs4109437	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urinary microalbumin levels	102,944 European ancestry individuals, 2,679 African ancestry individuals, 2,560 South Asian ancestry individuals	NA	4q35.2	NR	rs4109437-A	NR	8E-18		0.0963	[0.074-0.118] unit increase	Affymetrix [9000000] (imputed)	N
2040	chr4	190769222	190769223	rs4109437	30910378	Zanetti D	2019-03-12	Kidney Int	Identification of 22 novel loci associated with urinary biomarkers of albumin, sodium, and potassium excretion.	Urinary albumin-to-creatinine ratio	218,759 European ancestry individuals	109,530 European ancestry individuals	4q35.2	FRG1-DT	rs4109437-A	0.0382	9E-16		0.06	[0.046-0.074] unit increase	Affymetrix [19420026] (imputed)	N
2040	chr4	190769222	190769223	rs4109437	30910378	Zanetti D	2019-03-12	Kidney Int	Identification of 22 novel loci associated with urinary biomarkers of albumin, sodium, and potassium excretion.	Albuminuria	217,634 European ancestry individuals	108,800 European ancestry individuals	4q35.2	NR	rs4109437-A	0.0381	2E-10		0.2247	[0.16-0.29] unit increase	Affymetrix [19420026] (imputed)	N
585	chr4_ctg9_hap1	18969	18970	rs1730872	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	4q13.2	YTHDC1	rs1730872-G	0.822425	7E-10		0.017977066	[0.012-0.024] unit increase	Affymetrix [93095623] (imputed)	N
585	chr4_ctg9_hap1	18969	18970	rs1730872	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	4q13.2		rs1730872-?	NR	9E-15				NR [~ 8900000] (imputed)	N
585	chr4_ctg9_hap1	60952	60953	rs35051311	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	4q13.2		rs35051311-C	0.825639	3E-10		0.020057	[0.015-0.025] unit increase	Affymetrix [93095623] (imputed)	N
585	chr4_ctg9_hap1	74618	74619	rs34631417	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	4q13.2		rs34631417-T	NR	4E-14		0.0236	[0.018-0.03] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
585	chr4_ctg9_hap1	117214	117215	rs149760740	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	4q13.2		rs149760740-T	NR	1E-5		3.5246	[1.99-5.06] unit increase	Illumina [NR] (imputed)	N
586	chr4_ctg9_hap1	131862	131863	rs149605813	30353303	Seo M	2018-10-23	J Mol Med (Berl)	Genomics and response to long-term oxygen therapy in chronic obstructive pulmonary disease.	Response to long-term oxygen therapy in chronic obstructive pulmonary disease	290 European ancestry individuals	NA	4q13.2	NR	rs149605813-?	NR	4E-6				Illumina [5946283] (imputed)	N
586	chr4_ctg9_hap1	136695	136696	rs34041362	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	4q13.2	NR	rs34041362-G	NR	3E-23		0.0267	[0.021-0.032] unit increase	Affymetrix [9000000] (imputed)	N
586	chr4_ctg9_hap1	136695	136696	rs34041362	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	4q13.2	NR	rs34041362-G	NR	1E-19		0.0256	[0.02-0.031] unit increase	Affymetrix [9000000] (imputed)	N
586	chr4_ctg9_hap1	136695	136696	rs34041362	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	4q13.2	NR	rs34041362-G	NR	1E-23		0.0269	[0.022-0.032] unit decrease	Affymetrix [9000000] (imputed)	N
586	chr4_ctg9_hap1	136695	136696	rs34041362	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	4q13.2	NR	rs34041362-G	NR	5E-16		0.0218	[0.017-0.027] unit increase	Affymetrix [9000000] (imputed)	N
586	chr4_ctg9_hap1	136695	136696	rs34041362	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	4q13.2	NR	rs34041362-G	NR	4E-25		0.0279	[0.023-0.033] unit decrease	Affymetrix [9000000] (imputed)	N
586	chr4_ctg9_hap1	136695	136696	rs34041362	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	4q13.2	NR	rs34041362-G	NR	4E-12		0.0187	[0.013-0.024] unit increase	Affymetrix [9000000] (imputed)	N
586	chr4_ctg9_hap1	136695	136696	rs34041362	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	4q13.2	NR	rs34041362-G	NR	2E-11		0.0188	[0.013-0.024] unit increase	Affymetrix [9000000] (imputed)	N
586	chr4_ctg9_hap1	149613	149614	rs1919903	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Total cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	4q13.2	TMPRSS11E	rs1919903-?		6E-9		0.0273	[0.018-0.037] unit increase	Illumina [31500000] (imputed)	N
586	chr4_ctg9_hap1	149613	149614	rs1919903	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Low density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	4q13.2	TMPRSS11E	rs1919903-?		4E-8		0.0301	[0.019-0.041] unit increase	Illumina [31500000] (imputed)	N
586	chr4_ctg9_hap1	153988	153988	rs34327193	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in IDL	115,082 European ancestry individuals	NA	4q13.2		rs34327193-T	0.677146	9E-10		0.0273348	[0.019-0.036] unit decrease	NR [11722792] (imputed)	N
586	chr4_ctg9_hap1	156604	156605	rs4694077	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	4q13.2	TMPRSS11E	rs4694077-C	0.68	2E-25		10.4	z-score increase	Affymetrix [4311822] (imputed)	N
586	chr4_ctg9_hap1	161254	161254	rs34768803	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large HDL	115,082 European ancestry individuals	NA	4q13.2		rs34768803-G	0.763931	1E-11		0.0325935	[0.023-0.042] unit decrease	NR [11722792] (imputed)	N
586	chr4_ctg9_hap1	161254	161254	rs34768803	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large LDL	115,082 European ancestry individuals	NA	4q13.2		rs34768803-G	0.763931	2E-8		0.027441	[0.018-0.037] unit decrease	NR [11722792] (imputed)	N
586	chr4_ctg9_hap1	161254	161254	rs34768803	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very small VLDL	115,082 European ancestry individuals	NA	4q13.2		rs34768803-G	0.763931	3E-11		0.0323455	[0.023-0.042] unit decrease	NR [11722792] (imputed)	N
586	chr4_ctg9_hap1	161254	161254	rs34768803	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very small VLDL particles	115,082 European ancestry individuals	NA	4q13.2		rs34768803-G	0.763931	1E-10		0.0313323	[0.022-0.041] unit decrease	NR [11722792] (imputed)	N
586	chr4_ctg9_hap1	163732	163733	rs2603192	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls	NA	4q13.2	TMPRSS11E	rs2603192-C	0.413377	8E-9		0.033421762	[0.022-0.045] unit decrease	Affymetrix [7288503] (imputed)	N
586	chr4_ctg9_hap1	168229	168230	rs969114	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	4q13.2	TMPRSS11E	rs969114-A	0.5722	1E-26		0.029	[0.024-0.034] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
586	chr4_ctg9_hap1	169175	169176	rs34872892	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	4q13.2	TMPRSS11E	rs34872892-G	0.2108	6E-9		0.02561079	[0.017-0.034] unit decrease	Affymetrix [~ 2500000] (imputed)	N
586	chr4_ctg9_hap1	169848	169849	rs35662434	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	4q13.2		rs35662434-A	0.766288	2E-8		0.0275748	[0.018-0.037] unit increase	NR [11722792] (imputed)	N
586	chr4_ctg9_hap1	169848	169849	rs35662434	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	4q13.2		rs35662434-A	0.766288	3E-8		0.0258009	[0.017-0.035] unit decrease	NR [11722792] (imputed)	N
586	chr4_ctg9_hap1	169848	169849	rs35662434	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	4q13.2	TMPRSS11E	rs35662434-G	0.234468	5E-10		0.0204748	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
586	chr4_ctg9_hap1	170906	170907	rs4860948	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total phospholipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	4q13.2		rs4860948-T	0.755662	2E-12		0.0323994	[0.023-0.041] unit decrease	NR [11722792] (imputed)	N
586	chr4_ctg9_hap1	170906	170907	rs4860948	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very small VLDL	115,082 European ancestry individuals	NA	4q13.2		rs4860948-T	0.755662	8E-12		0.0322122	[0.023-0.041] unit decrease	NR [11722792] (imputed)	N
586	chr4_ctg9_hap1	170906	170907	rs4860948	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	4q13.2		rs4860948-T	0.755662	1E-9		0.0287168	[0.019-0.038] unit decrease	NR [11722792] (imputed)	N
586	chr4_ctg9_hap1	170906	170907	rs4860948	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in IDL	115,082 European ancestry individuals	NA	4q13.2		rs4860948-T	0.755662	1E-8		0.0266982	[0.018-0.036] unit decrease	NR [11722792] (imputed)	N
586	chr4_ctg9_hap1	170906	170907	rs4860948	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total free cholesterol levels	115,082 European ancestry individuals	NA	4q13.2		rs4860948-T	0.755662	2E-8		0.0264591	[0.017-0.036] unit decrease	NR [11722792] (imputed)	N
586	chr4_ctg9_hap1	170906	170907	rs4860948	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total fatty acid levels	115,006 European ancestry individuals	NA	4q13.2		rs4860948-T	0.755649	6E-9		0.027714	[0.018-0.037] unit decrease	NR [11722792] (imputed)	N
586	chr4_ctg9_hap1	170906	170907	rs4860948	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total esterified cholesterol levels	115,082 European ancestry individuals	NA	4q13.2		rs4860948-T	0.755662	4E-8		0.0255976	[0.016-0.035] unit decrease	NR [11722792] (imputed)	N
586	chr4_ctg9_hap1	170906	170907	rs4860948	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholines levels	115,006 European ancestry individuals	NA	4q13.2		rs4860948-T	0.755649	3E-13		0.0330627	[0.024-0.042] unit decrease	NR [11722792] (imputed)	N
586	chr4_ctg9_hap1	170906	170907	rs4860948	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol levels	115,082 European ancestry individuals	NA	4q13.2		rs4860948-T	0.755662	3E-8		0.0259895	[0.017-0.035] unit decrease	NR [11722792] (imputed)	N
586	chr4_ctg9_hap1	170906	170907	rs4860948	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Polyunsaturated fatty acid levels	115,006 European ancestry individuals	NA	4q13.2		rs4860948-T	0.755649	4E-13		0.0339763	[0.025-0.043] unit decrease	NR [11722792] (imputed)	N
586	chr4_ctg9_hap1	170906	170907	rs4860948	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in IDL	115,082 European ancestry individuals	NA	4q13.2		rs4860948-T	0.755662	1E-9		0.0282249	[0.019-0.037] unit decrease	NR [11722792] (imputed)	N
586	chr4_ctg9_hap1	170906	170907	rs4860948	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphoglycerides levels	115,006 European ancestry individuals	NA	4q13.2		rs4860948-T	0.755649	1E-13		0.0338023	[0.025-0.043] unit decrease	NR [11722792] (imputed)	N
586	chr4_ctg9_hap1	170906	170907	rs4860948	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphatidylcholine levels	115,006 European ancestry individuals	NA	4q13.2		rs4860948-T	0.755649	3E-15		0.0355022	[0.027-0.044] unit decrease	NR [11722792] (imputed)	N
586	chr4_ctg9_hap1	170906	170907	rs4860948	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-6 fatty acid levels	115,006 European ancestry individuals	NA	4q13.2		rs4860948-T	0.755649	1E-9		0.0285942	[0.019-0.038] unit decrease	NR [11722792] (imputed)	N
586	chr4_ctg9_hap1	170906	170907	rs4860948	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	4q13.2		rs4860948-T	0.755662	9E-11		0.0305913	[0.021-0.04] unit decrease	NR [11722792] (imputed)	N
586	chr4_ctg9_hap1	170906	170907	rs4860948	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	4q13.2		rs4860948-T	0.755662	4E-11		0.030842	[0.022-0.04] unit decrease	NR [11722792] (imputed)	N
586	chr4_ctg9_hap1	171402	171403	rs976058	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	4q13.2	TMPRSS11E	rs976058-T	0.5856	2E-16		0.022	[0.017-0.027] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
586	chr4_ctg9_hap1	173202	173203	rs976002	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	4q13.2	TMPRSS11E	rs976002-A	0.75471	5E-24		0.0230775	[0.019-0.028] unit decrease	Affymetrix [NR] (imputed)	N
586	chr4_ctg9_hap1	173202	173203	rs976002	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	Total cholesterol levels	up to 237,050 European ancestry individuals, up to 16,935 African ancestry individuals, up to 30,468 South Asian ancestry individuals, up to 8,287 East Asian ancestry individuals, 5,084 Hispanic individuals	up to 286,268 European and unknown ancestry individuals	4q13.2	NR	rs976002-G	NR	4E-46		0.03145003	[0.027-0.036] unit increase	Illumina [242289]	N
586	chr4_ctg9_hap1	173202	173203	rs976002	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	Total cholesterol levels	up to 237,050 European ancestry individuals	NA	4q13.2	NR	rs976002-G	0.23	1E-19		0.032	unit increase	Illumina [242289]	N
586	chr4_ctg9_hap1	175055	175056	rs1377870	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	4q13.2	NR	rs1377870-G	NR	1E-24		0.0273	[0.022-0.033] unit decrease	Affymetrix [9000000] (imputed)	N
586	chr4_ctg9_hap1	175055	175056	rs1377870	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	4q13.2	NR	rs1377870-G	NR	5E-17		0.0234	[0.018-0.029] unit decrease	Affymetrix [9000000] (imputed)	N
586	chr4_ctg9_hap1	175055	175056	rs1377870	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	4q13.2	NR	rs1377870-G	NR	2E-19		0.0241	[0.019-0.029] unit increase	Affymetrix [9000000] (imputed)	N
586	chr4_ctg9_hap1	175055	175056	rs1377870	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	4q13.2	NR	rs1377870-G	NR	4E-18		0.0231	[0.018-0.028] unit decrease	Affymetrix [9000000] (imputed)	N
586	chr4_ctg9_hap1	175055	175056	rs1377870	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	4q13.2	NR	rs1377870-G	NR	1E-27		0.029	[0.024-0.034] unit increase	Affymetrix [9000000] (imputed)	N
586	chr4_ctg9_hap1	175055	175056	rs1377870	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	4q13.2	NR	rs1377870-G	NR	1E-11		0.018	[0.013-0.023] unit increase	Affymetrix [9000000] (imputed)	N
586	chr4_ctg9_hap1	175055	175056	rs1377870	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	4q13.2	NR	rs1377870-G	NR	8E-14		0.0199	[0.015-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
586	chr4_ctg9_hap1	175055	175056	rs1377870	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	4q13.2	NR	rs1377870-G	NR	2E-12		0.0196	[0.014-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
586	chr4_ctg9_hap1	178927	178928	rs1117816	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	4q13.2	TMPRSS11E	rs1117816-A	0.78	2E-10		0.0212	[0.015-0.028] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
586	chr4_ctg9_hap1	183773	183774	rs10020631	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large HDL	115,082 European ancestry individuals	NA	4q13.2		rs10020631-G	0.752257	1E-15		0.0365244	[0.028-0.045] unit decrease	NR [11722792] (imputed)	N
586	chr4_ctg9_hap1	184260	184261	rs34109652	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	4q13.2	NR	rs34109652-A	NR	1E-9		0.0154	[0.011-0.02] unit decrease	Affymetrix [9000000] (imputed)	N
586	chr4_ctg9_hap1	186968	186969	rs35088884	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Sphingomyelin levels	115,006 European ancestry individuals	NA	4q13.2		rs35088884-A	0.346565	9E-9		0.0234809	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
586	chr4_ctg9_hap1	186968	186969	rs35088884	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very small VLDL	115,082 European ancestry individuals	NA	4q13.2		rs35088884-A	0.346561	5E-11		0.0277738	[0.02-0.036] unit decrease	NR [11722792] (imputed)	N
586	chr4_ctg9_hap1	186968	186969	rs35088884	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	4q13.2		rs35088884-C	NR	1E-9		0.0135	[0.0092-0.0178] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
586	chr4_ctg9_hap1	187959	187960	rs4694429	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	4q13.2	TMPRSS11E	rs4694429-A	0.34	6E-24	(11-ketoetiocholanolone sulfate)	0.617	[0.5-0.74] unit increase	Illumina [7750367] (imputed)	N
586	chr4_ctg9_hap1	189141	189142	rs34638591	32157176	Buchwald J	2020-03-10	Mol Psychiatry	Genome-wide association meta-analysis of nicotine metabolism and cigarette consumption measures in smokers of European descent.	Nicotine metabolite ratio in current smokers	5,185 European ancestry individuals	NA	4q13.2		rs34638591-T	0.43	1E-12		0.175	[0.13-0.22] unit increase	Illumina [9622178] (imputed)	N
586	chr4_ctg9_hap1	189198	189199	rs34103191	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	4q13.2	TMPRSS11E	rs34103191-A	0.34	4E-93	(X - 19141)	0.574	[0.52-0.63] unit decrease	Illumina [7750367] (imputed)	N
586	chr4_ctg9_hap1	190678	190679	rs34594059	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	4q13.2	TMPRSS11E	rs34594059-C	0.34	2E-27	(X - 19434 )	0.764	[0.62-0.9] unit decrease	Illumina [7750367] (imputed)	N
586	chr4_ctg9_hap1	191363	191364	rs35777071	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	4q13.2	TMPRSS11E	rs35777071-T	0.345738	4E-15		0.0158975	[0.012-0.02] unit decrease	Affymetrix [NR] (imputed)	N
586	chr4_ctg9_hap1	196744	196744	rs202059056	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	4q13.2	UGT2B17	rs202059056-?	NR	4E-8		0.0152	[0.01-0.02] unit increase	Affymetrix [5701386] (imputed)	N
586	chr4_ctg9_hap1	197794	197795	rs2603151	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	4q13.2		rs2603151-?	NR	8E-10				NR [~ 8900000] (imputed)	N
586	chr4_ctg9_hap1	197794	197795	rs2603151	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	4q13.2	intergenic	rs2603151-A	0.3612	1E-9		0.0168	[0.011-0.022] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
586	chr4_ctg9_hap1	203792	203793	rs13121671	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	4q13.2		rs13121671-G	0.697333	1E-8		0.0286667	[0.019-0.039] unit increase	NR [11722792] (imputed)	N
586	chr4_ctg9_hap1	203792	203793	rs13121671	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	4q13.2		rs13121671-G	0.69732	7E-10		0.0305406	[0.021-0.04] unit decrease	NR [11722792] (imputed)	N
586	chr4_ctg9_hap1	203893	203894	rs4860987	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to omega-3 fatty acids	115,006 European ancestry individuals	NA	4q13.2		rs4860987-A	0.741388	1E-17		0.0411323	[0.032-0.051] unit increase	NR [11722792] (imputed)	N
586	chr4_ctg9_hap1	203893	203894	rs4860987	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-3 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	4q13.2		rs4860987-A	0.741388	2E-16		0.0394847	[0.03-0.049] unit decrease	NR [11722792] (imputed)	N
586	chr4_ctg9_hap1	203893	203894	rs4860987	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-3 fatty acid levels	115,006 European ancestry individuals	NA	4q13.2		rs4860987-A	0.741388	5E-21		0.0450329	[0.036-0.054] unit decrease	NR [11722792] (imputed)	N
586	chr4_ctg9_hap1	203893	203894	rs4860987	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Docosahexaenoic acid levels	115,006 European ancestry individuals	NA	4q13.2		rs4860987-A	0.741388	6E-16		0.0382907	[0.029-0.048] unit decrease	NR [11722792] (imputed)	N
586	chr4_ctg9_hap1	203893	203894	rs4860987	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	4q13.2		rs4860987-T	NR	7E-37		0.0355	[0.03-0.041] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
586	chr4_ctg9_hap1	203893	203894	rs4860987	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	4q13.2	TMPRSS11E	rs4860987-A	0.740512	1E-50		0.00404239	[0.0035-0.0046] unit increase	Affymetrix [13995440] (imputed)	N
586	chr4_ctg9_hap1	203893	203894	rs4860987	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	4q13.2	NR	rs4860987-A	0.740467	6E-49		0.0339193	[0.029-0.038] unit decrease	Affymetrix [15000001]	N
586	chr4_ctg9_hap1	203893	203894	rs4860987	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	4q13.2	NR	rs4860987-T	0.260111	1E-105		0.0291524	[0.026-0.032] unit increase	Affymetrix [16582621] (imputed)	N
586	chr4_ctg9_hap1	203893	203894	rs4860987	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	4q13.2	NR	rs4860987-T	0.260111	5E-96		0.0297008	[0.027-0.033] unit increase	Affymetrix [16582614] (imputed)	N
586	chr4_ctg9_hap1	204065	204066	rs34707604	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	4q13.2		rs34707604-T	0.741488	7E-10		0.0300765	[0.021-0.04] unit increase	NR [11722792] (imputed)	N
586	chr4_ctg9_hap1	209874	209875	rs34187424	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	4q13.2	NR	rs34187424-C	NR	3E-11		0.0166	[0.012-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
586	chr4_ctg9_hap1	209874	209875	rs34187424	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	4q13.2	NR	rs34187424-C	NR	2E-12		0.0176	[0.013-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
586	chr4_ctg9_hap1	222585	222586	rs139487692	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	4q13.2	NR	rs139487692-T	0.009776000000000007	1E-8		0.0356806	[0.025-0.047] unit increase	Affymetrix [16582909] (imputed)	N
586	chr4_ctg9_hap1	222585	222586	rs139487692	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	4q13.2	NR	rs139487692-T	0.009776000000000007	1E-6		0.0342769	[0.022-0.047] unit increase	Affymetrix [16582965] (imputed)	N
586	chr4_ctg9_hap1	244715	244716	rs1531022	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	4q13.2	UGT2B15	rs1531022-G	0.411427	7E-25	(vanillylmandelate (VMA))	0.221	[0.18-0.26] unit increase	Illumina [13039987] (imputed)	N
586	chr4_ctg9_hap1	244715	244716	rs1531022	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	4q13.2	UGT2B15	rs1531022-A	0.46	1E-13	(X - 13688)	0.187	[0.14-0.24] unit increase	Illumina [7750367] (imputed)	N
586	chr4_ctg9_hap1	245804	245805	rs1349852	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	4q13.2	UGT2B15	rs1349852-A	0.524632	1E-41		0.00695203	[0.0059-0.008] unit increase	Affymetrix [13995440] (imputed)	N
586	chr4_ctg9_hap1	245804	245805	rs1349852	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	4q13.2	UGT2B15	rs1349852-A	0.524708	6E-9		0.011216	[0.0074-0.015] unit decrease	Affymetrix [NR] (imputed)	N
586	chr4_ctg9_hap1	245804	245805	rs1349852	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	4q13.2	NR	rs1349852-C	0.47546900000000003	5E-69		0.0193075	[0.017-0.022] unit increase	Affymetrix [16582621] (imputed)	N
586	chr4_ctg9_hap1	245804	245805	rs1349852	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	4q13.2	NR	rs1349852-C	0.47546900000000003	6E-67		0.02037	[0.018-0.023] unit increase	Affymetrix [16582614] (imputed)	N
586	chr4_ctg9_hap1	245808	245809	rs989075	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	4q13.2	UGT2B15	rs989075-A	0.524773	2E-21		0.0188142	[0.015-0.023] unit decrease	Affymetrix [NR] (imputed)	N
586	chr4_ctg9_hap1	248670	248671	rs1902023	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	4q13.2		rs1902023-C	NR	2E-35		0.0241	[0.02-0.028] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
586	chr4_ctg9_hap1	249428	249429	rs1580083	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	4q13.2	UGT2B15	rs1580083-T	0.393342	2E-10		0.015760832	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
586	chr4_ctg9_hap1	250061	250062	rs9994887	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	4q13.2	UGT2B15	rs9994887-G	0.475373	3E-10		0.0178915	[0.014-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
586	chr4_ctg9_hap1	250501	250502	rs7686914	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	4q13.2	NR	rs7686914-C	0.475402	9E-18		0.0110552	[0.0085-0.0136] unit increase	Affymetrix [16578495] (imputed)	N
586	chr4_ctg9_hap1	250766	250767	rs7696472	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	4q13.2	NR	rs7696472-A	0.475511	2E-39		0.0382386	[0.032-0.044] unit increase	Affymetrix [16577313] (imputed)	N
586	chr4_ctg9_hap1	250766	250767	rs7696472	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	4q13.2	NR	rs7696472-A	0.47507600000000005	8E-58		0.0130025	[0.011-0.015] unit increase	Affymetrix [16582909] (imputed)	N
586	chr4_ctg9_hap1	250766	250767	rs7696472	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	4q13.2	NR	rs7696472-A	0.474738	5E-8		0.00659221	[0.0042-0.009] unit increase	Affymetrix [16585854] (imputed)	N
586	chr4_ctg9_hap1	250766	250767	rs7696472	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	4q13.2	NR	rs7696472-A	0.47507600000000005	7E-48		0.0131911	[0.011-0.015] unit increase	Affymetrix [16582965] (imputed)	N
587	chr4_ctg9_hap1	266118	266119	rs13435134	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Testosterone levels	310,461 European ancestry individuals, 5,453 African ancestry individuals, 6,680 South Asian ancestry individuals	NA	4q13.2	NR	rs13435134-T	NR	4E-9		0.0171	[0.011-0.023] unit increase	Affymetrix [9000000] (imputed)	N
587	chr4_ctg9_hap1	266118	266119	rs13435134	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	4q13.2	NR	rs13435134-T	NR	6E-17		0.0242	[0.019-0.03] unit increase	Affymetrix [9000000] (imputed)	N
587	chr4_ctg9_hap1	266118	266119	rs13435134	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	4q13.2	NR	rs13435134-T	NR	3E-11		0.0183	[0.013-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
587	chr4_ctg9_hap1	266118	266119	rs13435134	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	4q13.2	NR	rs13435134-T	NR	2E-9		0.0173	[0.012-0.023] unit increase	Affymetrix [9000000] (imputed)	N
587	chr4_ctg9_hap1	300623	300624	rs293435	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium HDL	115,082 European ancestry individuals	NA	4q13.2		rs293435-C	0.711487	8E-9		0.0259218	[0.017-0.035] unit decrease	NR [11722792] (imputed)	N
587	chr4_ctg9_hap1	300623	300624	rs293435	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in HDL	115,082 European ancestry individuals	NA	4q13.2		rs293435-C	0.711487	3E-8		0.0247398	[0.016-0.034] unit decrease	NR [11722792] (imputed)	N
587	chr4_ctg9_hap1	304359	304360	rs293428	22829776	Coviello AD	2012-07-19	PLoS Genet	A genome-wide association meta-analysis of circulating sex hormone-binding globulin reveals multiple Loci implicated in sex steroid hormone regulation.	Sex hormone-binding globulin levels	21,791 European ancestry individuals	8,175 European ancestry individuals	4q13.2	UGT2B15	rs293428-A	0.69	6E-6	(Men + Women)	0.019	[0.011-0.027] umol/L decrease	Affymetrix, Illumina [2543887] (imputed)	N
587	chr4_ctg9_hap1	304359	304360	rs293428	22829776	Coviello AD	2012-07-19	PLoS Genet	A genome-wide association meta-analysis of circulating sex hormone-binding globulin reveals multiple Loci implicated in sex steroid hormone regulation.	Sex hormone-binding globulin levels	21,791 European ancestry individuals	8,175 European ancestry individuals	4q13.2	UGT2B15	rs293428-A	0.69	3E-8	(Men)	0.029	[0.019-0.039] umol/L decrease	Affymetrix, Illumina [2543887] (imputed)	N
587	chr4_ctg9_hap1	304634	304635	rs293427	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	4q13.2		rs293427-T	NR	1E-14		0.0165	[0.012-0.021] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
587	chr4_ctg9_hap1	311750	311751	rs176813	30289880	Qi G	2018-10-05	PLoS Genet	Heritability informed power optimization (HIPO) leads to enhanced detection of genetic associations across multiple traits.	Lipid traits (pleiotropy) (HIPO component 2)	188,577 European ancestry individuals	NA	4q13.2	UGT2B15	rs176813-?	NR	8E-9				NR [1800000]	N
587	chr4_ctg9_hap1	316709	316710	rs72651930	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 7, width of cartilaginous portion of nose)	2,187 European ancestry individuals	NA	4q13.2	NR	rs72651930-A	0.1302	7E-7		0.2227	[0.14-0.31] unit decrease	Illumina [10677593] (imputed)	N
587	chr4_ctg9_hap1	330491	330492	rs429930	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls, 33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	4q13.2		rs429930-T	NR	4E-9		0.0417	[0.028-0.056] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
587	chr4_ctg9_hap1	352785	352786	rs188482600	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	4q13.2	NR	rs188482600-?	NR	7E-11	(CXCL10)	2.09223	[1.46-2.72] unit increase	Illumina [11901634] (imputed)	N
587	chr4_ctg9_hap1	371996	371997	rs10023464	32555152	Smith RL	2020-06-19	Transl Psychiatry	Identification of a novel polymorphism associated with reduced clozapine concentration in schizophrenia patients-a genome-wide association study adjusting for smoking habits.	Clozapine-to-N-desmethylclozapine metabolic ratio in schizophrenia	3,473 European ancestry individuals	NA	4q13.2	CTD-2005D20.1	rs10023464-T	NR	2E-91		0.177	[0.16-0.19] unit decrease	Illumina [up to 6200000] (imputed)	N
587	chr4_ctg9_hap1	371996	371997	rs10023464	30922102	Pardinas AF	2019-03-29	Am J Psychiatry	Pharmacogenomic Variants and Drug Interactions Identified Through the Genetic Analysis of Clozapine Metabolism.	Plasma clozapine-norclozapine ratio in treatment-resistant schizophrenia	2,989 European ancestry individuals	NA	4q13.2	UGT2B4, UGT2B7, UGT2A3, UGT2B10, UGT2B11, UGT2B15, UGT2B28	rs10023464-T	0.101	9E-66				Illumina [~ 7500000] (imputed)	N
587	chr4_ctg9_hap1	371996	371997	rs10023464	29631575	Obeidat M	2018-04-10	Respir Res	The genetics of smoking in individuals with chronic obstructive pulmonary disease.	Cotinine levels in smokers with chronic obstructive pulmonary disease	4,024 European ancestry individuals	NA	4q13.2	UGT2B10	rs10023464-?	NR	1E-11		0.25	[0.17-0.33] unit increase	Illumina [7807992] (imputed)	N
587	chr4_ctg9_hap1	381433	381434	rs10000284	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	4q13.2		rs10000284-C	NR	4E-15		0.0263	[0.02-0.033] unit decrease	Affymetrix, Illumina [20535842] (imputed)	N
587	chr4_ctg9_hap1	381433	381434	rs10000284	32555152	Smith RL	2020-06-19	Transl Psychiatry	Identification of a novel polymorphism associated with reduced clozapine concentration in schizophrenia patients-a genome-wide association study adjusting for smoking habits.	N-desmethylclozapine concentration in schizophrenia	3,473 European ancestry individuals	NA	4q13.2	RP11-468N14.1	rs10000284-T	NR	4E-20		0.14	[0.11-0.17] unit decrease	Illumina [up to 6200000] (imputed)	N
587	chr4_ctg9_hap1	381433	381434	rs10000284	32157176	Buchwald J	2020-03-10	Mol Psychiatry	Genome-wide association meta-analysis of nicotine metabolism and cigarette consumption measures in smokers of European descent.	Cotinine and 3'-hydroxycotinine levels in current smokers	5,185 European ancestry individuals	NA	4q13.2		rs10000284-C	0.08	7E-22		0.346	[0.28-0.42] unit increase	Illumina [9622178] (imputed)	N
587	chr4_ctg9_hap1	393183	393184	rs294775	32157176	Buchwald J	2020-03-10	Mol Psychiatry	Genome-wide association meta-analysis of nicotine metabolism and cigarette consumption measures in smokers of European descent.	Cotinine levels in current smokers	5,185 European ancestry individuals	NA	4q13.2		rs294775-C	0.078	2E-21		0.354	[0.28-0.43] unit increase	Illumina [9622178] (imputed)	N
587	chr4_ctg9_hap1	393192	393193	rs11725502	30922102	Pardinas AF	2019-03-29	Am J Psychiatry	Pharmacogenomic Variants and Drug Interactions Identified Through the Genetic Analysis of Clozapine Metabolism.	Plasma norclozapine levels in treatment-resistant schizophrenia	2,989 European ancestry individuals	NA	4q13.2	UGT2B10	rs11725502-T	0.0983607	5E-15			decrease	Illumina [~ 7500000] (imputed)	N
588	chr4_ctg9_hap1	394186	394187	rs61750900	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	4q13.2	NR	rs61750900-T	NR	3E-13		0.0293	[0.021-0.037] unit decrease	Affymetrix [9000000] (imputed)	N
588	chr4_ctg9_hap1	394186	394187	rs61750900	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	4q13.2	NR	rs61750900-T	NR	3E-9		0.0259	[0.017-0.034] unit decrease	Affymetrix [9000000] (imputed)	N
588	chr4_ctg9_hap1	394721	394722	rs294777	25293881	Patel YM	2014-10-07	Cancer Epidemiol Biomarkers Prev	The contribution of common genetic variation to nicotine and cotinine glucuronidation in multiple ethnic/racial populations.	Cotinine glucuronidation	437 European ancestry current smoker individuals, 364 African American current smoker individuals, 453 Latino current smoker individuals, 674 Japanese ancestry current smoker individuals, 311 Native Hawaiian ancestry current smoker individuals	NA	4q13.2	UGT2B10	rs294777-A	NR	6E-48		0.1905	[NR] unit increase	Illumina [11892802] (imputed)	N
588	chr4_ctg9_hap1	394805	394806	rs294778	32157176	Buchwald J	2020-03-10	Mol Psychiatry	Genome-wide association meta-analysis of nicotine metabolism and cigarette consumption measures in smokers of European descent.	Smoking intensity (cotinine levels/cigarettes per day)	4,772 European ancestry individuals	NA	4q13.2		rs294778-G	0.079	2E-15		0.303	[0.23-0.38] unit increase	Illumina [9622178] (imputed)	N
588	chr4_ctg9_hap1	410505	410506	rs112901040	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	4q13.2	UGT2B10, RP11-468N14.3	rs112901040-T	0.120781	4E-23		0.033799134	[0.027-0.04] unit increase	Affymetrix [93095623] (imputed)	N
588	chr4_ctg9_hap1	432561	432562	rs1458247	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	4q13.2		rs1458247-?	NR	4E-23				NR [~ 8900000] (imputed)	N
588	chr4_ctg9_hap1	445284	445285	rs76177150	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	4q13.2		rs76177150-A	NR	4E-16		0.0231	[0.018-0.029] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
588	chr4_ctg9_hap1	445284	445285	rs76177150	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	4q13.2		rs76177150-A	0.120131	1E-11		0.0289546	[0.023-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
588	chr4_ctg9_hap1	445284	445285	rs76177150	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	4q13.2		rs76177150-A	0.120126	4E-13		0.025261898	[0.018-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
588	chr4_ctg9_hap1	445284	445285	rs76177150	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	4q13.2		rs76177150-?	NR	4E-24				NR [~ 8900000] (imputed)	N
588	chr4_ctg9_hap1	446409	446410	rs77829136	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q13.2	NR	rs77829136-A	0.134185	3E-25				Affymetrix, Illumina [20825802] (imputed)	N
588	chr4_ctg9_hap1	448910	448911	rs112421097	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	4q13.2	NR	rs112421097-G	NR	2E-8		0.0437953	[0.028-0.059] unit increase	Affymetrix [16832071] (imputed)	N
588	chr4_ctg9_hap1	449286	449287	rs11726946	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q13.2	NR	rs11726946-A	0.877747	5E-25				Affymetrix, Illumina [22063850] (imputed)	N
588	chr4_ctg9_hap1	449286	449287	rs11726946	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	4q13.2	NR	rs11726946-A	0.879385	2E-26		0.030957	[0.025-0.037] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
588	chr4_ctg9_hap1	449286	449287	rs11726946	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4q13.2	NR	rs11726946-G	0.13621	5E-23				Affymetrix, Illumina [24246363] (imputed)	N
588	chr4_ctg9_hap1	449286	449287	rs11726946	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	4q13.2	NR	rs11726946-G	0.120338	2E-24		0.028686	[0.023-0.034] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
588	chr4_ctg9_hap1	449286	449287	rs11726946	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	4q13.2	NR	rs11726946-G	0.120123	1E-25		0.031184	[0.025-0.037] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
588	chr4_ctg9_hap1	463935	463936	rs10001501	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	4q13.2	NR	rs10001501-G	NR	1E-15		0.0258	[0.02-0.032] unit increase	Affymetrix [9000000] (imputed)	N
588	chr4_ctg9_hap1	481536	481537	rs1989329	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 7, width of cartilaginous portion of nose)	2,187 European ancestry individuals	NA	4q13.2	NR	rs1989329-T	0.1323	3E-7		0.2306	[0.14-0.32] unit decrease	Illumina [10677593] (imputed)	N
588	chr4_ctg9_hap1	484086	484087	rs12650679	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	4q13.2		rs12650679-A	0.871	5E-11		0.11	[0.08-0.14] % increase	Affymetrix [NR] (imputed)	N
588	chr4_ctg9_hap1	519468	519469	rs1159714	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	4q13.2	NR	rs1159714-C	NR	2E-10		0.0239	[0.017-0.031] unit decrease	Affymetrix [9000000] (imputed)	N
589	chr4_ctg9_hap1	537618	537619	rs190537336	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	4q13.2	NR	rs190537336-?	NR	7E-11	(CXCL10)	2.07349	[1.45-2.7] unit increase	Illumina [11901634] (imputed)	N
589	chr4_ctg9_hap1	542792	542793	rs3966085	29432556	Brooke RJ	2018-02-08	J Natl Cancer Inst	A High-risk Haplotype for Premature Menopause in Childhood Cancer Survivors Exposed to Gonadotoxic Therapy.	Premature menopause in childhood cancer survivors	27 European ancestry cases, 3 African ancestry cases, 658 European ancestry controls, 111 African ancestry controls	NA	4q13.2	UGT2A3	rs3966085-G	NR	6E-6		28.89	[3.10-269.69]	Affymetrix [10993255] (imputed)	N
585	chr5	73212	73213	rs371918485	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Face memory	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	5p15.33	PLEKHG4B	rs371918485-G	NR	7E-6		0.2796453	[0.15-0.41] unit increase	Illumina [> 6200000] (imputed)	N
585	chr5	96063	96064	rs62344088	27611488	Almoguera B	2016-09-09	Am J Respir Crit Care Med	Identification of Four Novel Loci in Asthma in European American and African American Populations.	Asthma (childhood onset)	1,181 African American allergic asthma child cases, 498 African American non-allergic asthma child cases, 2,993 African American child controls, 998 European American allergic asthma child cases, 182 European American non-allergic asthma child cases, 4,097 European American child controls.	NA	5p15.33	PLEKHG4B	rs62344088-?	NR	8E-6	(AA)			Affymetrix, Illumina [NR] (imputed)	N
585	chr5	96063	96064	rs62344088	27611488	Almoguera B	2016-09-09	Am J Respir Crit Care Med	Identification of Four Novel Loci in Asthma in European American and African American Populations.	Asthma (childhood onset)	1,181 African American allergic asthma child cases, 498 African American non-allergic asthma child cases, 2,993 African American child controls, 998 European American allergic asthma child cases, 182 European American non-allergic asthma child cases, 4,097 European American child controls.	NA	5p15.33	PLEKHG4B	rs62344088-?	NR	1E-6		0.258	[0.15-0.36] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
586	chr5	188718	188719	rs17559144	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	5p15.33	NR	rs17559144-?	NR	8E-9				Illumina [7760689] (imputed)	N
586	chr5	188917	188918	rs6883247	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	5p15.33	NR	rs6883247-?	NR	7E-10				Affymetrix [~ 8270000] (imputed)	N
586	chr5	190638	190639	rs29681	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	5p15.33	NR	rs29681-T	0.877348	4E-8		0.00946255	[0.006-0.0129] unit increase	Affymetrix [16582621] (imputed)	N
586	chr5	190638	190639	rs29681	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	5p15.33	NR	rs29681-T	0.877348	6E-6		0.00861543	[0.0049-0.0123] unit increase	Affymetrix [16582614] (imputed)	N
586	chr5	231674	231674	rs754211820	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	5p15.33	SDHA	rs754211820-C	NR	2E-9		0.0233554	[0.016-0.031] unit increase	Affymetrix [321016] (imputed)	N
586	chr5	236759	236760	rs10057678	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	5p15.33		rs10057678-A	NR	6E-13		0.0159	[0.012-0.02] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
586	chr5	246027	246028	rs62344298	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	5p15.33	SDHA	rs62344298-G	NR	7E-10		0.0366481	[0.025-0.048] unit increase	Affymetrix [321016] (imputed)	N
587	chr5	284768	284768	rs112323962	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	5p15.33		rs112323962-AC	NR	2E-9		0.0227	[0.015-0.03] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
587	chr5	301698	301699	rs62329992	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	5p15.33	PDCD6	rs62329992-G	NR	7E-9		0.0244897	[0.016-0.033] unit increase	Affymetrix [321114] (imputed)	N
587	chr5	301698	301699	rs62329992	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	5p15.33	NR	rs62329992-?	NR	6E-13				Affymetrix [~ 8270000] (imputed)	N
587	chr5	311879	311880	rs62330020	34441435	Corma-Gomez A	2021-08-20	Diagnostics (Basel)	A Genome-Wide Association Study on Liver Stiffness Changes during Hepatitis C Virus Infection Cure.	Liver stiffness changes at sustained virological response following antiviral therapy in HCV infection	242 European ancestry individuals	NA	5p15.33		rs62330020-T	0.047	4E-6		22.65	[13.26-32.03] unit decrease	Affymetrix [6939676] (imputed)	N
587	chr5	311901	311902	rs62330021	33692100	Simcoe M	2021-03-10	Sci Adv	Genome-wide association study in almost 195,000 individuals identifies 50 previously unidentified genetic loci for eye color.	Eye color	157,485 European ancestry individuals	35,501 European ancestry individuals, 959 Han Chinese ancestry individuals, 677 Indian ancestry individuals	5p15.33		rs62330021-G	0.948	1E-80	(EA)	0.325	[0.29-0.36] unit decrease	Illumina [11532091] (imputed)	N
587	chr5	314517	314518	rs1574220	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	5p15.33	PDCD6, AHRR	rs1574220-C	NR	5E-9		0.0332102	[0.022-0.044] unit increase	Affymetrix [323123] (imputed)	N
587	chr5	314517	314518	rs1574220	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5p15.33		rs1574220-?	NR	9E-25				NR [~ 8900000] (imputed)	N
587	chr5	318556	318557	rs62330027	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	5p15.33	PDCD6, AHRR	rs62330027-A	NR	4E-8		0.0258262	[0.017-0.035] unit increase	Affymetrix [321016] (imputed)	N
587	chr5	318556	318557	rs62330027	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	5p15.33	AHRR	rs62330027-T	0.8982	6E-9		0.1271	[0.081-0.173] unit increase	Affymetrix [~ 11900000] (imputed)	N
587	chr5	329315	329316	rs190199516	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hearing difficulty/problems: Yes (UKB data field 2247_1)	114,318 European ancestry cases, 323,449 European ancestry controls	NA	5p15.33		rs190199516-C	7.273E-4	6E-24		0.84	[0.68-1] unit increase	NR [11842647] (imputed)	N
587	chr5	329315	329316	rs190199516	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hearing difficulty/problems: No (UKB data field 2247_0)	323,343 European ancestry cases, 114,424 European ancestry controls	NA	5p15.33		rs190199516-C	0.001557	3E-24		0.85	[0.69-1.01] unit decrease	NR [11842647] (imputed)	N
587	chr5	329315	329316	rs190199516	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hearing difficulty problems background noise (UKB data field 2257)	169,279 European ancestry cases, 277,792 European ancestry controls	NA	5p15.33		rs190199516-C	7.55E-4	1E-11		0.49	[0.35-0.63] unit increase	NR [11842647] (imputed)	N
587	chr5	329315	329316	rs190199516	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hearing aid user (UKB data field 3393)	13,905 European ancestry cases, 262,475 European ancestry controls	NA	5p15.33		rs190199516-C	0.00102	4E-9		1.21	[0.81-1.61] unit increase	NR [11842647] (imputed)	N
587	chr5	333096	333097	rs143590040	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	5p15.33		rs143590040-?	NR	2E-11				NR [~ 8900000] (imputed)	N
587	chr5	361147	361148	rs4957026	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	NA	5p15.33	AHRR	rs4957026-A	0.3399	8E-10		0.1982	[0.13-0.26] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
587	chr5	378423	378424	rs72711354	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	5p15.33	AHRR	rs72711354-G	0.9689	4E-10		6.254	NR z score decrease	Illumina [26237160] (imputed)	N
588	chr5	404320	404321	rs16900846	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	5p15.33	NR	rs16900846-?	NR	1E-35				Affymetrix [NR]	N
588	chr5	428235	428236	rs12188164	21602797	Wright FA	2011-05-22	Nat Genet	Genome-wide association and linkage identify modifier loci of lung disease severity in cystic fibrosis at 11p13 and 20q13.2.	Cystic fibrosis severity	2,317 European ancestry cases, 177 cases	898 European ancestry sibling pair cases, 75 sibling pair cases	5p15.33	AHRR	rs12188164-A	0.38	4E-6				Illumina [~ 2609000] (imputed)	N
588	chr5	434721	434722	rs34453673	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	5p15.33	AHRR	rs34453673-C		6E-12		0.015	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
588	chr5	438101	438102	rs10078	21897333	Irvin MR	2011-12-01	Pharmacogenet Genomics	Genes linked to energy metabolism and immunoregulatory mechanisms are associated with subcutaneous adipose tissue distribution in HIV-infected men.	Fat distribution (HIV)	192 European ancestry male cases	NA	5p15.33	AHRR	rs10078-C	0.23	7E-6	(univariate, arm)			Illumina [319818]	N
588	chr5	441694	441695	rs12153091	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5p15.33	NR	rs12153091-C	0.304935	4E-16				Affymetrix, Illumina [24332387] (imputed)	N
588	chr5	448290	448291	rs72717436	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	5p15.33	EXOC3	rs72717436-A	0.405401	1E-18		0.019815091	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
588	chr5	448290	448291	rs72717436	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	5p15.33	EXOC3	rs72717436-A	0.405452	1E-17		0.019287873	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
588	chr5	448290	448291	rs72717436	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	5p15.33	EXOC3	rs72717436-A	0.405427	3E-19		0.020184418	[0.016-0.025] unit increase	Affymetrix [93095623] (imputed)	N
588	chr5	448290	448291	rs72717436	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	5p15.33	NR	rs72717436-A	0.401208	3E-17		0.01595	[0.012-0.02] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
588	chr5	448290	448291	rs72717436	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5p15.33	NR	rs72717436-A	0.310568	2E-20				Affymetrix, Illumina [24653286] (imputed)	N
588	chr5	448290	448291	rs72717436	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	5p15.33	NR	rs72717436-A	0.400582	3E-21		0.017771	[0.014-0.021] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
588	chr5	448290	448291	rs72717436	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5p15.33	NR	rs72717436-A	0.313214	7E-24				Affymetrix, Illumina [24558453] (imputed)	N
588	chr5	448290	448291	rs72717436	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	5p15.33	NR	rs72717436-A	0.400651	4E-24		0.019046	[0.015-0.023] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
588	chr5	448290	448291	rs72717436	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	5p15.33		rs72717436-?	NR	3E-19				NR [~ 8900000] (imputed)	N
588	chr5	457260	457261	rs11749327	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	5p15.33	EXOC3	rs11749327-A		3E-11		0.02	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
588	chr5	457260	457261	rs11749327	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	5p15.33	EXOC3	rs11749327-A	0.3062	5E-9		0.02272517	[0.015-0.03] unit increase	Affymetrix [~ 2500000] (imputed)	N
588	chr5	457260	457261	rs11749327	25108383	Geller F	2014-08-10	Nat Genet	Genome-wide association analyses identify variants in developmental genes associated with hypospadias.	Hypospadias	1,006 European ancestry male child cases, 2,390 European ancestry male child controls, 3,096 European ancestry female child controls	1,972 European ancestry male child cases, 1,401 European ancestry male child controls, 405 European ancestry female child controls, 6 European ancestry child controls	5p15.33	EXOC3	rs11749327-C	0.707	9E-9		1.25	[NR]	Illumina [8207076] (imputed)	N
588	chr5	465163	465164	rs76667725	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs76667725-A	0.792182	2E-8		0.0644921	[0.042-0.087] decrease	Affymetrix [11014269] (imputed)	N
588	chr5	467976	467977	rs190811224	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	5p15.33	NR	rs190811224-T	0.7316	5E-6	(EA)	0.037	[0.021-0.053] unit decrease	Illumina [~ 11800000] (imputed)	N
588	chr5	477633	477634	rs4334924	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	5p15.33		rs4334924-A	NR	9E-10		0.0119	[0.0082-0.0156] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
588	chr5	494963	494964	rs60857630	30926877	Brcic L	2019-03-29	Sci Rep	Genome-wide association analysis suggests novel loci underlying thyroid antibodies in Hashimoto's thyroiditis.	Anti-thyroglobulin (TgAb) levels in Hashimoto's thyroiditis	405 European ancestry cases	NA	5p15.33	SLC9A3	rs60857630-C	0.803	6E-6		0.42	[0.24-0.6] unit increase	Illumina [6007542] (imputed)	N
588	chr5	498234	498235	rs6555317	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	5p15.33	SLC9A3	rs6555317-A	0.69	2E-9		0.0024	[0.0016-0.0032] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
588	chr5	518433	518434	rs56302516	26417704	Corvol H	2015-09-29	Nat Commun	Genome-wide association meta-analysis identifies five modifier loci of lung disease severity in cystic fibrosis.	Lung disease severity in cystic fibrosis	4,139 European and other ancestry p.Phe508del homozygote cases,  2,226 European and other ancestry cases	NA	5p15.33	SLC9A3, CEP72	rs56302516-T	0.24	8E-10	(EA, p.Phe508del, random)			Illumina [8520458] (imputed)	N
588	chr5	518433	518434	rs56302516	26417704	Corvol H	2015-09-29	Nat Commun	Genome-wide association meta-analysis identifies five modifier loci of lung disease severity in cystic fibrosis.	Lung disease severity in cystic fibrosis	4,139 European and other ancestry p.Phe508del homozygote cases,  2,226 European and other ancestry cases	NA	5p15.33	SLC9A3, CEP72	rs56302516-T	0.24	4E-9	(p.Phe508del, random)	0.17	[NR] unit decrease	Illumina [8520458] (imputed)	N
589	chr5	542022	542023	rs9800013	33608531	Wu Y	2021-02-19	Nat Commun	GWAS of peptic ulcer disease implicates Helicobacter pylori infection, other gastrointestinal disorders and depression.	Gastroesophageal reflux disease, peptic ulcer disease and/or corresponding medications and treatment	90,175 European ancestry cases, 366,152 European ancestry controls	NA	5p15.33	NR	rs9800013-A	0.77	3E-9		0.96		NR [8546065] (imputed)	N
589	chr5	547895	547896	rs72704791	31409800	Pazoki R	2019-08-13	Nat Commun	GWAS for urinary sodium and potassium excretion highlights pathways shared with cardiovascular traits.	Urinary potassium excretion	446,230 European ancestry individuals	7,612 African ancestry individuals, 10,095 South Asian ancestry individuals	5p15.33	MIR4456	rs72704791-A	0.808299	3E-12	(EA)	0.0106017	[0.0076-0.0136] unit increase	Affymetrix [~ 8800000] (imputed)	N
589	chr5	582323	582324	rs11955068	32918910	Dong J	2020-09-09	Gastroenterology	Sex-Specific Genetic Associations for Barrett's Esophagus and Esophageal Adenocarcinoma.	Barrett's esophagus or esophageal adenocarcinoma x sex interaction (2df test)	6,758 European ancestry male cases, 1,670 European ancestry female cases, 7,489 European ancestry male controls, 6,174 European ancestry female controls	NA	5p15.33	CEP72	rs11955068-T	NR	2E-8				Illumina [up to 9353006] (imputed)	N
589	chr5	582323	582324	rs11955068	32918910	Dong J	2020-09-09	Gastroenterology	Sex-Specific Genetic Associations for Barrett's Esophagus and Esophageal Adenocarcinoma.	Barrett's esophagus  or Esophageal adenocarcinoma	6,758 European ancestry male cases, 1,670 European ancestry female cases, 7,489 European ancestry male controls, 6,174 European ancestry female controls	NA	5p15.33	CEP72	rs11955068-T	NR	1E-6		1.15	[1.09-1.22]	Illumina [up to 9353006] (imputed)	N
589	chr5	583441	583442	rs4957048	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Ulcerative colitis	12,366 European and unknown ancestry cases, 33,609 European and unknown ancestry controls	NA	5p15.33	AC026740.1, TPPP, SLC9A3, CEP72	rs4957048-?		2E-7				Illumina [9578670] (imputed)	N
589	chr5	583441	583442	rs4957048	20228799	McGovern DP	2010-03-14	Nat Genet	Genome-wide association identifies multiple ulcerative colitis susceptibility loci.	Ulcerative colitis	2,693 European ancestry cases, 6,791 European ancestry controls	2,009 European ancestry cases, 1,580 European ancestry controls	5p15.33	CEP72, TPPP	rs4957048-C	NR	1E-9		1.11	[NR]	Illumina [266047]	N
589	chr5	586623	586624	rs57221529	26417704	Corvol H	2015-09-29	Nat Commun	Genome-wide association meta-analysis identifies five modifier loci of lung disease severity in cystic fibrosis.	Lung disease severity in cystic fibrosis	4,139 European and other ancestry p.Phe508del homozygote cases,  2,226 European and other ancestry cases	NA	5p15.33	SLC9A3, CEP72	rs57221529-G	0.19	9E-7	(females, random)			Illumina [8520458] (imputed)	N
589	chr5	586623	586624	rs57221529	26417704	Corvol H	2015-09-29	Nat Commun	Genome-wide association meta-analysis identifies five modifier loci of lung disease severity in cystic fibrosis.	Lung disease severity in cystic fibrosis	4,139 European and other ancestry p.Phe508del homozygote cases,  2,226 European and other ancestry cases	NA	5p15.33	SLC9A3, CEP72	rs57221529-G	0.19	7E-12	(random)	0.16	[NR] unit decrease	Illumina [8520458] (imputed)	N
589	chr5	586623	586624	rs57221529	26417704	Corvol H	2015-09-29	Nat Commun	Genome-wide association meta-analysis identifies five modifier loci of lung disease severity in cystic fibrosis.	Lung disease severity in cystic fibrosis	4,139 European and other ancestry p.Phe508del homozygote cases,  2,226 European and other ancestry cases	NA	5p15.33	SLC9A3, CEP72	rs57221529-G	0.19	2E-6	(males, random)			Illumina [8520458] (imputed)	N
589	chr5	586623	586624	rs57221529	26417704	Corvol H	2015-09-29	Nat Commun	Genome-wide association meta-analysis identifies five modifier loci of lung disease severity in cystic fibrosis.	Lung disease severity in cystic fibrosis	4,139 European and other ancestry p.Phe508del homozygote cases,  2,226 European and other ancestry cases	NA	5p15.33	SLC9A3, CEP72	rs57221529-G	0.19	1E-11	(EA, random)			Illumina [8520458] (imputed)	N
589	chr5	593159	593160	rs10080150	34187846	Ong JS	2021-06-29	Gut	Multitrait genetic association analysis identifies 50 new risk loci for gastro-oesophageal reflux, seven new loci for Barrett's oesophagus and provides insights into clinical heterogeneity in reflux diagnosis.	Barrett's esophagus	13,358 European ancestry cases, 43,071 European ancestry controls	24,099 cases, 1,484,025 controls	5p15.33	NR	rs10080150-A	0.62	1E-9		0.094	unit decrease	NR [2324712] (imputed)	N
589	chr5	594082	594083	rs11739663	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	5p15.33	NR	rs11739663-A	0.77	2E-6	(EA)	1.0785052		Affymetrix, Illumina [~ 9000000] (imputed)	N
589	chr5	594082	594083	rs11739663	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Ulcerative colitis	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls	5p15.33	SLC9A3	rs11739663-T	0.76	2E-8		1.071	[1.027-1.117]	Affymetrix, Illumina [1230000] (imputed)	N
589	chr5	594082	594083	rs11739663	21297633	Anderson CA	2011-02-06	Nat Genet	Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47.	Ulcerative colitis	6,687 European ancestry cases, 19,718 European ancestry controls	9,628 European ancestry cases, 12,917 European ancestry controls	5p15.33	EXOC3	rs11739663-T	0.77	3E-8		1.15	[1.09-1.21]	Affymetrix, Illumina [~ 1100000] (imputed)	N
589	chr5	609660	609661	rs11739847	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	5p15.33	LOC100996325	rs11739847-A	0.1992	2E-6		0.014	[0.0083-0.0197] unit decrease	Affymetrix [19819130] (imputed)	N
589	chr5	609660	609661	rs11739847	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	5p15.33	LOC100996325	rs11739847-A	0.1992	1E-9		0.0179	[0.012-0.024] unit decrease	Affymetrix [19819130] (imputed)	N
589	chr5	609660	609661	rs11739847	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	5p15.33	LOC100996325	rs11739847-A	0.1992	4E-13		0.021	[0.015-0.027] unit decrease	Affymetrix [19819130] (imputed)	N
589	chr5	610092	610093	rs924607	25710658	Diouf B	2015-02-24	JAMA	Association of an inherited genetic variant with vincristine-related peripheral neuropathy in children with acute lymphoblastic leukemia.	Vincristine-induced peripheral neuropathy in acute lymphoblastic leukemia	53 European ancestry cases with peripheral neuropathy, 156 cases without peripheral neuropathy, 10 African ancestry cases with peripheral neuropathy, 33 African ancestry cases without peripheral neuropathy, 1 Asian ancestry case with peripheral neuropathy, 1 Asian ancestry case without peripheral neuropathy, 14 Hispanic cases with peripheral neuropathy, 30 Hispanic cases without peripheral neuropathy, 8 cases with peripheral neuropathy, 15 cases without peripheral neuropathy	NA	5p15.33	CEP72	rs924607-T	NR	6E-9		2.43	[1.70-3.49]	Affymetrix [1576016] (imputed)	N
589	chr5	611385	611397	rs149938398	32918910	Dong J	2020-09-09	Gastroenterology	Sex-Specific Genetic Associations for Barrett's Esophagus and Esophageal Adenocarcinoma.	Barrett's esophagus or esophageal adenocarcinoma x sex interaction (2df test)	6,758 European ancestry male cases, 1,670 European ancestry female cases, 7,489 European ancestry male controls, 6,174 European ancestry female controls	NA	5p15.33	CEP72	rs149938398-CCCCCTACACACT	NR	4E-9				Illumina [up to 9353006] (imputed)	N
589	chr5	611385	611397	rs149938398	32918910	Dong J	2020-09-09	Gastroenterology	Sex-Specific Genetic Associations for Barrett's Esophagus and Esophageal Adenocarcinoma.	Barrett's esophagus  or Esophageal adenocarcinoma	6,758 European ancestry male cases, 1,670 European ancestry female cases, 7,489 European ancestry male controls, 6,174 European ancestry female controls	NA	5p15.33	CEP72	rs149938398-CCCCCTACACACT	NR	1E-7		0.85	[0.80-0.90]	Illumina [up to 9353006] (imputed)	N
589	chr5	618585	618586	rs7726839	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	5p15.33		rs7726839-?	NR	2E-12				NR [~ 8900000] (imputed)	N
589	chr5	618585	618586	rs7726839	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	5p15.33	CEP72	rs7726839-G	0.282	1E-6	(HDL )	0.03	[NR] mg/dL increase	Illumina [899892]	N
589	chr5	646417	646418	rs4957081	32918910	Dong J	2020-09-09	Gastroenterology	Sex-Specific Genetic Associations for Barrett's Esophagus and Esophageal Adenocarcinoma.	Barrett's esophagus or esophageal adenocarcinoma x sex interaction (2df test)	6,758 European ancestry male cases, 1,670 European ancestry female cases, 7,489 European ancestry male controls, 6,174 European ancestry female controls	NA	5p15.33	CEP72	rs4957081-C	NR	4E-9				Illumina [up to 9353006] (imputed)	N
589	chr5	646417	646418	rs4957081	32918910	Dong J	2020-09-09	Gastroenterology	Sex-Specific Genetic Associations for Barrett's Esophagus and Esophageal Adenocarcinoma.	Barrett's esophagus  or Esophageal adenocarcinoma	6,758 European ancestry male cases, 1,670 European ancestry female cases, 7,489 European ancestry male controls, 6,174 European ancestry female controls	NA	5p15.33	CEP72	rs4957081-C	NR	7E-8		1.18	[1.11-1.25]	Illumina [up to 9353006] (imputed)	N
590	chr5	662546	662547	rs11738281	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	5p15.33		rs11738281-?	NR	7E-21				NR [~ 8900000] (imputed)	N
590	chr5	663091	663092	rs9918259	27527254	Gharahkhani P	2016-08-12	Lancet Oncol	Genome-wide association studies in oesophageal adenocarcinoma and Barrett's oesophagus: a large-scale meta-analysis.	Barrett's esophagus  or Esophageal adenocarcinoma	6,167 European ancestry Barrett's oesophagus cases, 4,112 European ancestry esophageal adenocarcinoma cases, 17,159 European ancestry controls	NA	5p15.33	TPPP, CEP72	rs9918259-T		3E-9		1.2	[1.13-1.27]	Illumina [11951684] (imputed)	N
590	chr5	665670	665671	rs74553517	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	5p15.33	NR	rs74553517-?	NR	1E-6		0.0083835	[0.005-0.0118] unit decrease	Affymetrix [805426] (imputed)	N
590	chr5	667619	667620	rs72707023	33888516	Zheng T	2021-04-22	Gut	Genome-wide analysis of 944 133 individuals provides insights into the etiology of haemorrhoidal disease.	Haemorrhoidal disease	218,920 European ancestry cases, 725,213 European ancestry controls	NA	5p15.33	TPPP	rs72707023-?	0.1777	2E-13		0.96	[0.95-0.97]	Affymetrix, Illumina [8494288] (imputed)	N
590	chr5	668308	668309	rs75783973	27527254	Gharahkhani P	2016-08-12	Lancet Oncol	Genome-wide association studies in oesophageal adenocarcinoma and Barrett's oesophagus: a large-scale meta-analysis.	Esophageal adenocarcinoma	4,112 European ancestry cases, 17,159 European ancestry controls	NA	5p15.33	TPPP, CEP72	rs75783973-A		2E-8		1.3303	[1.23-1.43]	Illumina [13074274] (imputed)	N
590	chr5	676767	676768	rs12516404	32157568	Strupp M	2020-03-10	Cerebellum	A Variation in FGF14 Is Associated with Downbeat Nystagmus in a Genome-Wide Association Study.	Idiopathic downbeat nystagmus	106 European ancestry cases, 2,609 European ancestry controls	NA	5p15.33	TPPP	rs12516404-A	0.133	9E-6		2.57	[1.69-3.91]	Illumina [7759885] (imputed)	N
590	chr5	676961	676962	rs13159523	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	5p15.33	TPPP	rs13159523-A	0.4942	1E-13		0.0024	[0.0018-0.003] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
590	chr5	676961	676962	rs13159523	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	13,359 South Asian ancestry individuals	NA	5p15.33	TPPP	rs13159523-A	0.4838	1E-6		0.0113	[0.0068-0.0158] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
590	chr5	688899	688900	rs2455357	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Creatinine levels	110,051 European ancestry individuals	NA	5p15.33		rs2455357-A	0.293478	4E-9		0.0255602	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
590	chr5	692886	692887	rs62330329	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in non-diabetics	152,624 European ancestry individuals, 36,369 African American individuals	NA	5p15.33	TPPP	rs62330329-T	0.278	1E-11		0.611	[0.43-0.79] unit decrease	Affymetrix [NR] (imputed)	N
590	chr5	698649	698650	rs413988	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in diabetes	70,762 European ancestry individuals, 20,967 African American individuals	NA	5p15.33	TPPP	rs413988-T	0.694	3E-11		0.943	[0.66-1.22] unit increase	Affymetrix [NR] (imputed)	N
590	chr5	699646	699647	rs4957107	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	5p15.33		rs4957107-A	NR	4E-11		0.0206	[0.015-0.027] unit decrease	Affymetrix, Illumina [20538307] (imputed)	N
590	chr5	699646	699647	rs4957107	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	5p15.33	NR	rs4957107-A	NR	9E-11		0.0212	[0.015-0.028] unit decrease	Affymetrix [9000000] (imputed)	N
590	chr5	700559	700560	rs35352112	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	5p15.33	NR	rs35352112-?	NR	6E-11				Affymetrix [~ 8270000] (imputed)	N
590	chr5	732299	732300	rs4956965	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	5p15.33	ZDHHC11, ZDHHC11B	rs4956965-T	NR	7E-9		0.0199899	[0.013-0.027] unit decrease	Affymetrix [321114] (imputed)	N
590	chr5	777684	777685	rs112927770	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,931 Sub-Saharan African ancestry males	NA	5p15.33		rs112927770-A	0.937421	6E-6		0.0278896	[0.016-0.04] unit decrease	Illumina [13900000] (imputed)	N
591	chr5	818478	818479	rs6875688	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Myopia (age of diagnosis)	104,293 European ancestry individuals	NA	5p15.33	NR	rs6875688-T	0.1112	8E-9		0.0952	[0.063-0.128] unit increase	Illumina [~ 10600000] (imputed)	N
591	chr5	851581	851582	rs3810859	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in ever smokers	23,223 European ancestry cases,  16,964 European ancestry controls	NA	5p15.33	ZDHHC11	rs3810859-A	0.263131228	4E-6		1.0810798	[1.046035748-1.117297904]	Illumina [10439017] (imputed)	N
591	chr5	877833	877834	rs72703147	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	5p15.33		rs72703147-?	NR	1E-18				NR [~ 8900000] (imputed)	N
592	chr5	946452	946453	rs144352333	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	5p15.33	RP11-661C8.2	rs144352333-G	0.00465000000000004	3E-11		0.111564465	[0.079-0.145] unit decrease	Affymetrix [93095623] (imputed)	N
592	chr5	986082	986083	rs113881833	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	5p15.33	RP11-661C8.3, RP11-43F13.3	rs113881833-T	0.049883	7E-13		0.0323113	[0.022-0.042] unit decrease	Affymetrix [93095623] (imputed)	N
592	chr5	1000155	1000156	rs78154696	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	5p15.33	LOC100506688, NKD2	rs78154696-A	0.026574964	8E-7		1.2176539	[1.126256955-1.316467615]	Illumina [10439017] (imputed)	N
592	chr5	1004311	1004312	rs72705193	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	5p15.33	AC116351.2	rs72705193-G	0.243147	1E-9		0.0295494	[0.024-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
592	chr5	1004701	1004702	rs79398649	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in ever smokers	23,223 European ancestry cases,  16,964 European ancestry controls	NA	5p15.33	LOC100506688, NKD2	rs79398649-T	0.025282695	1E-7		1.2955143	[1.176950281-1.426022404]	Illumina [10439017] (imputed)	N
592	chr5	1010037	1010038	rs75954784	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-13 levels	3,557 Finnish ancestry individuals	NA	5p15.33	NR	rs75954784-C		6E-6		0.1433	[0.081-0.206] SD units increase	NR [10700000] (imputed)	N
592	chr5	1015062	1015063	rs16870629	24952745	Arking DE	2014-06-22	Nat Genet	Genetic association study of QT interval highlights role for calcium signaling pathways in myocardial repolarization.	QT interval	Up to 70,389 European ancestry individuals, up to 672 Orcadian individuals	Up to 33,316 European ancestry individuals	5p15.33	NKD2	rs16870629-T	0.393	8E-6		0.45	[0.25-0.65] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
592	chr5	1017914	1017915	rs4975528	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Red cell distribution width	10,184 White ancestry individuals, 44 Asian ancestry individuals, 6,776 Black individuals, 11,978 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	5p15.33		rs4975528-A	NR	3E-11		0.09	[0.07-0.11] unit increase	Illumina [76131582]	N
592	chr5	1017914	1017915	rs4975528	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	5p15.33	NKD2	rs4975528-A	0.273412	1E-10		0.0231061	[0.018-0.028] unit increase	Affymetrix [93095623] (imputed)	N
592	chr5	1025648	1025649	rs368447685	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	5p15.33	NKD2	rs368447685-C	NR	7E-16		0.0724178	[0.054-0.091] unit decrease	Affymetrix [16832071] (imputed)	N
592	chr5	1041432	1041433	rs117893233	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	5p15.33	NKD2	rs117893233-T	0.00397099999999995	1E-32		0.21915133	[0.18-0.26] unit decrease	Affymetrix [93095623] (imputed)	N
592	chr5	1041432	1041433	rs117893233	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	5p15.33	NKD2	rs117893233-T	NR	2E-15		0.245255	[0.18-0.31] unit decrease	Affymetrix [16832071] (imputed)	N
592	chr5	1041432	1041433	rs117893233	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	5p15.33	NKD2	rs117893233-T	0.0048	5E-9		0.1679467	[0.11-0.22] unit decrease	Affymetrix [~ 2500000] (imputed)	N
592	chr5	1043070	1043072	rs538745408	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	5p15.33	NKD2	rs538745408-A	0.012997	8E-13		0.07841597	[0.057-0.1] unit increase	Affymetrix [93095623] (imputed)	N
593	chr5	1048606	1048607	rs190996050	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung adenocarcinoma	11,273 European ancestry cases,  55,483 European ancestry controls	NA	5p15.33	NKD2, SLC12A7	rs190996050-C	0.016581211	1E-7		1.5653622	[1.327700541-1.84556605]	Illumina [10439017] (imputed)	N
593	chr5	1050990	1050991	rs56368594	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	5p15.33	SLC12A7	rs56368594-A	0.016852	2E-33		0.112481505	[0.094-0.131] unit decrease	Affymetrix [93095623] (imputed)	N
593	chr5	1051756	1051757	rs55861694	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	5p15.33	SLC12A7	rs55861694-C	0.0182	4E-32		0.167085	[0.14-0.19] unit decrease	Affymetrix [~ 2500000] (imputed)	N
593	chr5	1054196	1054197	rs4975572	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	5p15.33	SLC12A7	rs4975572-T	0.46	6E-21		0.62	[0.48-0.76] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
593	chr5	1056165	1056166	rs145548600	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	5p15.33	SLC12A7	rs145548600-C	0.00701499999999999	7E-19		0.12951432	[0.1-0.16] unit increase	Affymetrix [93095623] (imputed)	N
593	chr5	1057959	1057960	rs35791340	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	5p15.33	SLC12A7	rs35791340-T	0.817103	8E-23		0.032725774	[0.026-0.039] unit increase	Affymetrix [93095623] (imputed)	N
593	chr5	1058035	1058036	rs111552633	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	5p15.33	SLC12A7	rs111552633-A	0.012428	3E-78		0.19364704	[0.17-0.21] unit decrease	Affymetrix [93095623] (imputed)	N
593	chr5	1058118	1058119	rs62329239	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	5p15.33	SLC12A7	rs62329239-G	0.9204867	9E-18		0.0274407	[0.019-0.036] unit increase	Affymetrix [93095623] (imputed)	N
593	chr5	1058386	1058387	rs111910553	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	5p15.33	MIR4635	rs111910553-A	NR	5E-27		0.188622	[0.15-0.22] unit decrease	Affymetrix [16832071] (imputed)	N
593	chr5	1058386	1058387	rs111910553	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	5p15.33	SLC12A7	rs111910553-A	0.0123	5E-43		0.2221308	[0.19-0.25] unit decrease	Affymetrix [~ 2500000] (imputed)	N
593	chr5	1059713	1059714	rs117617134	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	5p15.33	SLC12A7	rs117617134-T	0.012861	2E-10		0.06280691	[0.044-0.082] unit decrease	Affymetrix [93095623] (imputed)	N
593	chr5	1066399	1066400	rs182271072	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	5p15.33	SLC12A7	rs182271072-A	0.9853	4E-19		3.0046	[2.35-3.66] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
593	chr5	1067941	1067942	rs112694389	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	5p15.33		rs112694389-?	NR	1E-86				NR [~ 8900000] (imputed)	N
593	chr5	1068999	1069000	rs117656550	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin concentration	108,728 Japanese ancestry individuals	NA	5p15.33	NR	rs117656550-?	NR	2E-24		0.106	[0.086-0.126] unit decrease novel	Illumina [6108953] (imputed)	N
593	chr5	1075050	1075051	rs11133613	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	5p15.33	SLC12A7	rs11133613-A	0.9692463	6E-14		0.0586578	[0.046-0.071] unit decrease	Affymetrix [93095623] (imputed)	N
593	chr5	1075050	1075051	rs11133613	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	5p15.33	SLC12A7	rs11133613-G	NR	1E-21		0.109035	[0.086-0.132] unit decrease	Affymetrix [16832071] (imputed)	N
593	chr5	1075050	1075051	rs11133613	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	5p15.33	SLC12A7	rs11133613-G	0.9694	2E-53		0.1577319	[0.14-0.18] unit decrease	Affymetrix [~ 2500000] (imputed)	N
593	chr5	1076458	1076459	rs11952124	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	5p15.33	SLC12A7	rs11952124-T	NR	1E-9		0.0505895	[0.034-0.067] unit increase	Affymetrix [16832071] (imputed)	N
593	chr5	1078831	1078832	rs151053159	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	5p15.33	SLC12A7	rs151053159-T	0.00289700000000004	1E-11		0.15920068	[0.11-0.21] unit decrease	Affymetrix [93095623] (imputed)	N
593	chr5	1078897	1078898	rs4975564	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	5p15.33	SLC12A7	rs4975564-G	0.9416428	9E-23		0.052175816	[0.042-0.063] unit decrease	Affymetrix [93095623] (imputed)	N
593	chr5	1080133	1080134	rs56287436	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	135,482 East Asian ancestry individuals	NA	5p15.33		rs56287436-A	0.324419	5E-52		0.0598701	[0.052-0.068] unit decrease	Illumina [13477028] (imputed)	N
593	chr5	1080133	1080134	rs56287436	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	126,151 East Asian ancestry individuals	NA	5p15.33	NR	rs56287436-G	0.69506	1E-43		0.062577	[0.054-0.071] SD units increase	Affymetrix, Illumina [16289083] (imputed)	N
593	chr5	1080133	1080134	rs56287436	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular volume	108,256 Japanese ancestry individuals	NA	5p15.33	NR	rs56287436-?	NR	2E-26		0.05259	[0.043-0.062] unit increase novel	Illumina [6108953] (imputed)	N
593	chr5	1080133	1080134	rs56287436	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin concentration	108,728 Japanese ancestry individuals	NA	5p15.33	SLC12A7	rs56287436-?	NR	2E-41		0.06687	[0.057-0.077] unit decrease novel	Illumina [6108953] (imputed)	N
593	chr5	1085733	1085734	rs141839244	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	5p15.33	SLC12A7	rs141839244-T	0.0169	1E-21		0.1540117	[0.12-0.19] unit decrease	Affymetrix [~ 2500000] (imputed)	N
593	chr5	1088640	1088641	rs143063381	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	5p15.33	SLC12A7	rs143063381-T	0.00490400000000002	3E-11		0.117207	[0.085-0.149] unit decrease	Affymetrix [93095623] (imputed)	N
593	chr5	1090367	1090368	rs4975662	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	5p15.33	SLC12A7	rs4975662-T	0.505932	8E-27		0.02815602	[0.023-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
593	chr5	1090533	1090534	rs6864667	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	5p15.33	SLC12A7	rs6864667-A	0.491119	4E-9		0.0132763535	[0.0089-0.0177] unit increase	Affymetrix [93095623] (imputed)	N
593	chr5	1091131	1091132	rs374171962	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	5p15.33	SLC12A7	rs374171962-A	0.00625500000000001	9E-19		0.13105571	[0.1-0.16] unit increase	Affymetrix [93095623] (imputed)	N
593	chr5	1093510	1093511	rs187282666	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	5p15.33	SLC12A7	rs187282666-A	0.00505199999999995	1E-54		0.25044426	[0.22-0.28] unit decrease	Affymetrix [93095623] (imputed)	N
593	chr5	1093510	1093511	rs187282666	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	5p15.33	SLC12A7	rs187282666-A	NR	2E-17		0.225183	[0.17-0.28] unit decrease	Affymetrix [16832071] (imputed)	N
593	chr5	1093510	1093511	rs187282666	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	5p15.33	SLC12A7	rs187282666-A	0.0053	3E-25		0.2593755	[0.21-0.31] unit decrease	Affymetrix [~ 2500000] (imputed)	N
593	chr5	1093860	1093861	rs6883412	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	5p15.33	SLC12A7	rs6883412-T	0.4465	1E-44		0.05306879	[0.046-0.06] unit increase	Affymetrix [~ 2500000] (imputed)	N
593	chr5	1098919	1098920	rs34396314	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	5p15.33	SLC12A7	rs34396314-A	0.51892	3E-9		0.013321455	[0.0089-0.0177] unit increase	Affymetrix [93095623] (imputed)	N
593	chr5	1102705	1102706	rs10067280	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	5p15.33	SLC12A7	rs10067280-T	0.643628	6E-9		0.013467762	[0.0089-0.018] unit increase	Affymetrix [93095623] (imputed)	N
593	chr5	1104937	1104938	rs35188965	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	5p15.33		rs35188965-T	NR	7E-13		0.0153	[0.011-0.019] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
593	chr5	1104937	1104938	rs35188965	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	5p15.33	SLC12A7	rs35188965-T	0.580672	3E-11		0.014918029	[0.011-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
593	chr5	1104937	1104938	rs35188965	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	5p15.33	SLC12A7	rs35188965-T	0.580856	2E-9		0.029677346	[0.02-0.039] unit decrease	Affymetrix [93095623] (imputed)	N
593	chr5	1104937	1104938	rs35188965	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	5p15.33	SLC12A7	rs35188965-T	0.580682	1E-33		0.027166072	[0.023-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
593	chr5	1104937	1104938	rs35188965	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	5p15.33	SLC12A7	rs35188965-T	0.581541	1E-13		0.016989253	[0.013-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
593	chr5	1104937	1104938	rs35188965	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	5p15.33	SLC12A7	rs35188965-T	0.581572	3E-30		0.026122479	[0.022-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
593	chr5	1104937	1104938	rs35188965	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	5p15.33	SLC12A7	rs35188965-T	0.580703	1E-14		0.017275674	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
593	chr5	1104937	1104938	rs35188965	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	5p15.33	SLC12A7	rs35188965-T	0.580712	2E-28		0.02510912	[0.021-0.03] unit increase	Affymetrix [93095623] (imputed)	N
593	chr5	1104937	1104938	rs35188965	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	5p15.33	SLC12A7	rs35188965-T	0.580796	4E-24		0.023169948	[0.019-0.028] unit increase	Affymetrix [93095623] (imputed)	N
593	chr5	1104937	1104938	rs35188965	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	5p15.33	SLC12A7	rs35188965-T	0.581553	3E-55		0.03554229	[0.031-0.04] unit decrease	Affymetrix [93095623] (imputed)	N
593	chr5	1104937	1104938	rs35188965	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	5p15.33	SLC12A7	rs35188965-T	0.580752	1E-41		0.0358141	[0.032-0.04] unit increase	Affymetrix [93095623] (imputed)	N
593	chr5	1104937	1104938	rs35188965	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	5p15.33	SLC12A7	rs35188965-T	0.580738	3E-19		0.02009876	[0.016-0.024] unit increase	Affymetrix [93095623] (imputed)	N
593	chr5	1104937	1104938	rs35188965	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	5p15.33	NR	rs35188965-C	0.420166	8E-304		0.074744	[0.071-0.079] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
593	chr5	1104937	1104938	rs35188965	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5p15.33	NR	rs35188965-C	0.428061	4E-79				Affymetrix, Illumina [17210439] (imputed)	N
593	chr5	1104937	1104938	rs35188965	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	5p15.33	NR	rs35188965-C	0.418991	5E-80		0.036921	[0.033-0.041] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
593	chr5	1104937	1104938	rs35188965	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	5p15.33		rs35188965-?	NR	8E-10				NR [~ 8900000] (imputed)	N
593	chr5	1104937	1104938	rs35188965	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	5p15.33		rs35188965-?	NR	9E-263				NR [~ 8900000] (imputed)	N
593	chr5	1104937	1104938	rs35188965	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	5p15.33		rs35188965-?	NR	3E-35				NR [~ 8900000] (imputed)	N
593	chr5	1104937	1104938	rs35188965	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	5p15.33		rs35188965-?	NR	1E-24				NR [~ 8900000] (imputed)	N
593	chr5	1104937	1104938	rs35188965	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	5p15.33	SLC12A7	rs35188965-T	NR	1E-78		0.0735561	[0.066-0.081] unit decrease	Affymetrix [16832071] (imputed)	N
593	chr5	1104937	1104938	rs35188965	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	5p15.33	SLC12A7	rs35188965-T	0.5794	1E-9		0.02199592	[0.015-0.029] unit decrease	Affymetrix [~ 2500000] (imputed)	N
593	chr5	1104937	1104938	rs35188965	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	5p15.33	SLC12A7	rs35188965-T	0.5794	3E-9		0.02151233	[0.014-0.029] unit decrease	Affymetrix [~ 2500000] (imputed)	N
593	chr5	1104937	1104938	rs35188965	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	5p15.33	SLC12A7	rs35188965-T	0.5795	7E-121		0.08359654	[0.077-0.091] unit decrease	Affymetrix [~ 2500000] (imputed)	N
593	chr5	1104937	1104938	rs35188965	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	5p15.33	SLC12A7	rs35188965-T	0.5794	5E-13		0.02596179	[0.019-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
593	chr5	1104937	1104938	rs35188965	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	5p15.33	SLC12A7	rs35188965-T	0.5805	1E-18		0.03195326	[0.025-0.039] unit decrease	Affymetrix [~ 2500000] (imputed)	N
593	chr5	1104937	1104938	rs35188965	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	5p15.33	SLC12A7	rs35188965-T	0.5794	3E-9		0.02145621	[0.014-0.029] unit decrease	Affymetrix [~ 2500000] (imputed)	N
593	chr5	1104937	1104938	rs35188965	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	5p15.33	SLC12A7	rs35188965-T	0.5795	5E-10		0.02260213	[0.015-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
593	chr5	1104937	1104938	rs35188965	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	5p15.33	SLC12A7	rs35188965-T	0.5805	3E-26		0.0387415	[0.032-0.046] unit decrease	Affymetrix [~ 2500000] (imputed)	N
593	chr5	1104937	1104938	rs35188965	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	5p15.33	SLC12A7	rs35188965-T	0.5794	2E-30		0.04100192	[0.034-0.048] unit increase	Affymetrix [~ 2500000] (imputed)	N
593	chr5	1104937	1104938	rs35188965	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	5p15.33	SLC12A7	rs35188965-T	0.5795	1E-9		0.02197885	[0.015-0.029] unit decrease	Affymetrix [~ 2500000] (imputed)	N
593	chr5	1107427	1107428	rs4535497	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	5p15.33	SLC12A7	rs4535497-C	0.570397	2E-25		0.0293824	[0.025-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
593	chr5	1107427	1107428	rs4535497	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5p15.33	NR	rs4535497-C	0.440818	2E-311				Affymetrix, Illumina [22063850] (imputed)	N
593	chr5	1107427	1107428	rs4535497	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red cell distribution width	9,611 European ancestry individuals	NA	5p15.33		rs4535497-?	0.4346	3E-6		0.1012	[0.059-0.144] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
593	chr5	1107427	1107428	rs4535497	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red cell distribution width	6,141 African American individuals, 17,272 Hispanic or Latin American individuals, 9,611 European ancestry individuals, 123 Asian ancestry individuals, 20 Native American ancestry individuals, 382 individuals	NA	5p15.33		rs4535497-?	0.5263	2E-15		0.0631	[0.048-0.079] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
593	chr5	1107427	1107428	rs4535497	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red cell distribution width	17,272 Hispanic or Latin American individuals	NA	5p15.33		rs4535497-?	0.6069	8E-12		0.0763	[0.054-0.098] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
593	chr5	1107427	1107428	rs4535497	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular volume	8,556 African American individuals, 17,141 Hispanic or Latin American individuals, 14,483 European ancestry individuals, 125 Asian ancestry individuals, 594 Native American ancestry individuals, 377 individuals	NA	5p15.33		rs4535497-?	0.5263	7E-10		0.2471	[0.17-0.33] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
593	chr5	1107427	1107428	rs4535497	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular volume	14,483 European ancestry individuals	NA	5p15.33		rs4535497-?	0.4346	1E-8		0.3103	[0.2-0.42] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
593	chr5	1107427	1107428	rs4535497	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular hemoglobin concentration	up to 21,020 European ancestry individuals, up to 3,621 African American individuals, up to 15,062 East Asian individuals.	16,389 European and African American individuals.	5p15.33	NR	rs4535497-A	NR	3E-8	(Asian)	0.0019	[0.0013-0.0025] unit decrease	NR [2500000] (imputed)	N
593	chr5	1109567	1109568	rs4565255	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	5p15.33	SLC12A7	rs4565255-C	0.593724	4E-10		0.030838482	[0.021-0.04] unit decrease	Affymetrix [93095623] (imputed)	N
593	chr5	1112871	1112872	rs13181874	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin concentration	172,851 European ancestry individuals	NA	5p15.33	SLC12A7	rs13181874-C	0.5913	2E-22		0.03475236	[0.028-0.042] unit decrease	Affymetrix [~ 2500000] (imputed)	N
593	chr5	1113243	1113244	rs4580814	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5p15.33	NR	rs4580814-T	0.517676	5E-71				Affymetrix, Illumina [21126107] (imputed)	N
593	chr5	1113243	1113244	rs4580814	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	5p15.33	NR	rs4580814-T	0.591225	5E-47		0.02958	[0.026-0.034] SD unit decrease	Affymetrix, Illumina [50282193] (imputed)	N
593	chr5	1113243	1113244	rs4580814	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	5p15.33	NR	rs4580814-T	0.590884	1E-13		0.014682	[0.011-0.019] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
593	chr5	1113243	1113244	rs4580814	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	5p15.33	SLC12A7	rs4580814-T		2E-8		0.01	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
593	chr5	1113243	1113244	rs4580814	20139978	Kamatani Y	2010-02-07	Nat Genet	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Mean corpuscular hemoglobin concentration	14,377 Japanese ancestry individuals	NA	5p15.33	SLC12A7	rs4580814-T	0.26	5E-10		0.083	[0.058-0.108] unit decrease	Illumina [561583]	N
593	chr5	1113485	1113486	rs6880997	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5p15.33	NR	rs6880997-G	0.508054	2E-11				Affymetrix, Illumina [24653286] (imputed)	N
593	chr5	1114821	1114822	rs7701990	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	8,166 South Asian ancestry individuals	NA	5p15.33	NR	rs7701990-G	0.553295	4E-10		0.0983185	[0.068-0.129] SD units increase	Affymetrix, Illumina [28471494] (imputed)	N
593	chr5	1114943	1114944	rs7702189	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	5p15.33		rs7702189-A	NR	8E-45		0.0294	[0.025-0.034] unit decrease	Affymetrix, Illumina [20536605] (imputed)	N
593	chr5	1115114	1115115	rs7703616	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	5p15.33	SLC12A7	rs7703616-T	0.591826	1E-14		0.017495003	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
593	chr5	1122070	1122071	rs62329565	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	5p15.33	SLC12A7	rs62329565-T	0.0995	7E-6		0.0561	[0.032-0.08] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
593	chr5	1128735	1128736	rs12517665	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	5p15.33	SLC12A7, CTD-3080P12.3	rs12517665-A	0.191790898	8E-6		1.0714158	[1.039420707-1.104395695]	Illumina [10439017] (imputed)	N
593	chr5	1151594	1151595	rs55738218	31209788	Li HQ	2019-06-18	Neurotox Res	Genome-Wide Association Study of Cerebral Microbleeds on MRI.	Cerebral microbleed progression	57 European ancestry cases, 95 European ancestry controls	NA	5p15.33	NR	rs55738218-?	NR	9E-6		4.55	[NR]	Illumina [979539]	N
594	chr5	1181726	1181744	rs151067661	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	5p15.33	BC032469, SLC6A19	rs151067661-CCACCGTGGGGTCGGGCCT	0.689546	2E-20	(methionine sulfone)	0.223	[0.18-0.27] unit decrease	Illumina [13039987] (imputed)	N
594	chr5	1181726	1181744	rs151067661	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	1,509 European ancestry individuals	5p15.33	BC032469, SLC6A19	rs151067661-CCACCGTGGGGTCGGGCCT	0.689546	2E-20	(methionine sulfone)	0.223	[0.18-0.27] unit decrease	Illumina [13039987] (imputed)	N
594	chr5	1188284	1188285	rs11133665	32572055	Sekula P	2020-06-22	Sci Rep	Urine 6-Bromotryptophan: Associations with Genetic Variants and Incident End-Stage Kidney Disease.	Urine 6-bromotryptophan levels in chronic kidney disease	4,863 European ancestry individuals	NA	5p15.33	SLC6A19	rs11133665-A	0.28	6E-12		0.17	[0.13-0.21] unit decrease	NR [9281895] (imputed)	N
594	chr5	1188284	1188285	rs11133665	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	5p15.33	SLC6A19	rs11133665-A	0.27	9E-16	(kynurenine)	0.365	[0.28-0.45] unit decrease	Illumina [7750367] (imputed)	N
594	chr5	1188284	1188285	rs11133665	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	5p15.33	SLC6A19	rs11133665-A	0.27	5E-23	(tryptophan)	0.271	[0.22-0.33] unit decrease	Illumina [7750367] (imputed)	N
594	chr5	1188284	1188285	rs11133665	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	5p15.33	SLC6A19	rs11133665-A	0.27	2E-15	(phenylalanine)	0.167	[0.13-0.21] unit decrease	Illumina [7750367] (imputed)	N
594	chr5	1188284	1188285	rs11133665	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	5p15.33	SLC6A19	rs11133665-A	0.27	1E-16	(tyrosine)	0.228	[0.17-0.28] unit decrease	Illumina [7750367] (imputed)	N
594	chr5	1188284	1188285	rs11133665	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	5p15.33	SLC6A19	rs11133665-A	0.27	1E-15	(3-hydroxykynurenine)	0.457	[0.35-0.57] unit decrease	Illumina [7750367] (imputed)	N
594	chr5	1188284	1188285	rs11133665	26352407	Raffler J	2015-09-09	PLoS Genet	Genome-Wide Association Study with Targeted and Non-targeted NMR Metabolomics Identifies 15 Novel Loci of Urinary Human Metabolic Individuality.	Urinary metabolites	3,861 European ancestry individuals	1,691European ancestry individuals	5p15.33	SLC6A19	rs11133665-A	0.26	2E-26	(histidine/?-methylhistidine)	0.1569	[NR] unit decrease	Affymetrix [620456]	N
594	chr5	1189673	1189674	rs145613323	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	5p15.33	Intergenic	rs145613323-A	0.999	5E-6	(AA)	0.396	unit increase	Illumina [NR] (imputed)	N
594	chr5	1194029	1194030	rs11747993	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	5p15.33	NR	rs11747993-A	NR	3E-11		0.0182	[0.013-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
594	chr5	1194029	1194030	rs11747993	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	5p15.33	NR	rs11747993-A	NR	8E-10		0.0168	[0.012-0.022] unit increase	Affymetrix [9000000] (imputed)	N
594	chr5	1194029	1194030	rs11747993	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	5p15.33	NR	rs11747993-A	NR	5E-11		0.0181	[0.013-0.023] unit increase	Affymetrix [9000000] (imputed)	N
594	chr5	1204542	1204543	rs72709406	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5p15.33	NR	rs72709406-G	0.08711	5E-9	(LAP3)	0.4443	NR unit increase	Illumina [1671387] (imputed)	N
594	chr5	1209435	1209436	rs79784189	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	5p15.33		rs79784189-?	NR	6E-16				NR [~ 8900000] (imputed)	N
594	chr5	1212452	1212453	rs121434346	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	5p15.33		rs121434346-A	NR	1E-19		0.1315	[0.1-0.16] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
594	chr5	1212452	1212453	rs121434346	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Creatinine levels	437,660 European ancestry individuals	NA	5p15.33		rs121434346-?	NR	6E-30		0.165764	[0.14-0.2] unit decrease	NR [9800000] (imputed)	N
594	chr5	1212452	1212453	rs121434346	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	5p15.33	NR	rs121434346-A	NR	6E-21		0.1701	[0.13-0.21] unit increase	Affymetrix [9000000] (imputed)	N
594	chr5	1212452	1212453	rs121434346	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	5p15.33	NR	rs121434346-A	NR	6E-11		0.1186	[0.083-0.154] unit decrease	Affymetrix [9000000] (imputed)	N
594	chr5	1212452	1212453	rs121434346	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	5p15.33	NR	rs121434346-A	NR	1E-20		0.1688	[0.13-0.2] unit decrease	Affymetrix [9000000] (imputed)	N
594	chr5	1233349	1233350	rs6554676	31231134	Laskar RS	2019-06-23	Eur J Hum Genet	Sex specific associations in genome wide association analysis of renal cell carcinoma.	Renal cell carcinoma	1,992 European ancestry female cases, 3,095 European ancestry female controls	1,399 European ancestry female cases, 1,575 European ancestry female controls	5p15.33	SLC6A18	rs6554676-T	NR	6E-6		1.4705882	[1.23-1.72]	Illumina [~ 6000000] (imputed)	N
594	chr5	1240203	1240204	rs78368589	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	5p15.33	TERT, CLPTM1L	rs78368589-T	0.0597	9E-12		1.14	[1.10-1.18]	Affymetrix, Illumina [16900397] (imputed)	N
594	chr5	1240997	1240998	rs77776598	31089142	Law PJ	2019-05-14	Nat Commun	Association analyses identify 31 new risk loci for colorectal cancer susceptibility.	Colorectal cancer	31,197 European ancestry cases, 61,770 European ancestry controls	NA	5p15.33	NR	rs77776598-C	0.06	8E-9		1.14	[1.09-1.20]	Affymetrix, Illumina [> 10000000] (imputed)	N
594	chr5	1279789	1279790	rs10069690	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Albumin levels	115,064 European ancestry individuals	NA	5p15.33		rs10069690-C	0.741048	4E-8		0.0258387	[0.017-0.035] unit decrease	NR [11722792] (imputed)	N
594	chr5	1279789	1279790	rs10069690	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Uterine fibroids	21,024 European ancestry cases, 237,694 European ancestry controls, 14,475 East Asian ancestry cases, 65,733 East Asian ancestry controls	NA	5p15.33		rs10069690-T	NR	2E-34		0.1226	[0.1-0.14] unit increase	Affymetrix, Illumina [25795146] (imputed)	N
594	chr5	1279789	1279790	rs10069690	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	5p15.33		rs10069690-T	NR	2E-9		0.0133	[0.009-0.0176] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
594	chr5	1279789	1279790	rs10069690	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	5p15.33		rs10069690-T	NR	2E-15		0.0196	[0.015-0.025] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
594	chr5	1279789	1279790	rs10069690	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulmonary fibrosis	1,566 European ancestry cases, 467,560 European ancestry controls, 126 East Asian ancestry cases, 176,974 East Asian ancestry controls	NA	5p15.33		rs10069690-T	NR	2E-14		0.306	[0.23-0.38] unit decrease	Affymetrix, Illumina [25843031] (imputed)	N
594	chr5	1279789	1279790	rs10069690	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	5p15.33		rs10069690-T	NR	5E-9		0.0131	[0.0088-0.0174] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
594	chr5	1279789	1279790	rs10069690	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Prostate cancer	7,438 White British ancestry cases, 118,206 White British ancestry controls	NA	5p15.33		rs10069690-?	NR	3E-10		0.88005	[0.84-0.92]	NR [680312]	N
594	chr5	1279789	1279790	rs10069690	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	5p15.33	NR	rs10069690-T	NR	2E-9		0.017	[0.012-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
594	chr5	1279789	1279790	rs10069690	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	5p15.33	NR	rs10069690-T	NR	3E-13		0.0206	[0.015-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
594	chr5	1279789	1279790	rs10069690	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	5p15.33	NR	rs10069690-T	NR	4E-31		0.0329	[0.027-0.038] unit decrease	Affymetrix [9000000] (imputed)	N
594	chr5	1279789	1279790	rs10069690	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	5p15.33		rs10069690-T	NR	2E-20		1.06	[1.05-1.08]	Affymetrix, Illumina [NR] (imputed)	N
594	chr5	1279789	1279790	rs10069690	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	5p15.33	NR	rs10069690-C	0.741932	4E-8		0.00704007	[0.0045-0.0096] unit increase	Affymetrix [16582621] (imputed)	N
594	chr5	1279789	1279790	rs10069690	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	5p15.33	NR	rs10069690-C	0.741932	9E-7		0.00662534	[0.0039-0.0094] unit increase	Affymetrix [16582614] (imputed)	N
594	chr5	1279789	1279790	rs10069690	31407831	Din L	2019-08-13	Genet Epidemiol	Genetic overlap between autoimmune diseases and non-Hodgkin lymphoma subtypes.	Chronic lymphocytic leukemia or systemic lupus erythematosus	2,492 European ancestry chronic lymphocytic leukemia cases, 7,219 European ancestry systemic lupus erythematosus cases, 23,144 European ancestry controls	NA	5p15.33	TERT	rs10069690-T	NR	5E-9		1.1573		Illumina [~ 600000] (imputed)	N
594	chr5	1279789	1279790	rs10069690	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	5p15.33		rs10069690-?	NR	3E-12				NR [~ 8900000] (imputed)	N
594	chr5	1279789	1279790	rs10069690	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	5p15.33	TERT	rs10069690-T	0.2591	4E-21		0.2735	[0.22-0.33] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
594	chr5	1279789	1279790	rs10069690	30194396	Rafnar T	2018-09-07	Nat Commun	Variants associating with uterine leiomyoma highlight genetic background shared by various cancers and hormone-related traits.	Uterine fibroids	16,595 European ancestry cases, 523,330 European ancestry controls	NA	5p15.33	TERT	rs10069690-T	0.25878	4E-18		1.12	[1.1-1.15]	Affymetrix, Illumina [43421991] (imputed)	N
594	chr5	1279789	1279790	rs10069690	30152087	Ostrom QT	2018-08-27	Int J Cancer	Age-specific genome-wide association study in glioblastoma identifies increased proportion of 'lower grade glioma'-like features associated with younger age.	Glioblastoma (age-stratified)	1,533 cases diagnosed below median age, 1,476 cases diagnosed at median age, 1,503 cases diagnosed above median age, 10,582 controls,	NA	5p15.33	TERT	rs10069690-T	NR	5E-31	(Above median age-at-diagnosis)	1.72	[1.57-1.89]	NR [NR] (imputed)	N
594	chr5	1279789	1279790	rs10069690	30152087	Ostrom QT	2018-08-27	Int J Cancer	Age-specific genome-wide association study in glioblastoma identifies increased proportion of 'lower grade glioma'-like features associated with younger age.	Glioblastoma (age-stratified)	1,533 cases diagnosed below median age, 1,476 cases diagnosed at median age, 1,503 cases diagnosed above median age, 10,582 controls,	NA	5p15.33	TERT	rs10069690-T	NR	4E-33	(Median age-at-diagnosis)	1.78	[1.62-1.95]	NR [NR] (imputed)	N
594	chr5	1279789	1279790	rs10069690	30152087	Ostrom QT	2018-08-27	Int J Cancer	Age-specific genome-wide association study in glioblastoma identifies increased proportion of 'lower grade glioma'-like features associated with younger age.	Glioblastoma (age-stratified)	1,533 cases diagnosed below median age, 1,476 cases diagnosed at median age, 1,503 cases diagnosed above median age, 10,582 controls,	NA	5p15.33	TERT	rs10069690-T	NR	4E-18	(Below median age-at-diagnosis)	1.51	[1.38-1.66]	NR [NR] (imputed)	N
594	chr5	1279789	1279790	rs10069690	29743610	Ostrom QT	2018-05-09	Sci Rep	Sex-specific glioma genome-wide association study identifies new risk locus at 3p21.31 in females, and finds sex-differences in risk at 8q24.21.	Non-glioblastoma glioma	1,716 European ancestry male cases, 1,320 European ancestry female cases, 5,216 European ancestry male controls, 5,470 European ancestry female controls	NA	5p15.33	TERT	rs10069690-T	NR	2E-6	(females)	1.31	[1.17-1.46]	Affymetrix, Illumina [NR] (imputed)	N
594	chr5	1279789	1279790	rs10069690	29743610	Ostrom QT	2018-05-09	Sci Rep	Sex-specific glioma genome-wide association study identifies new risk locus at 3p21.31 in females, and finds sex-differences in risk at 8q24.21.	Non-glioblastoma glioma	1,716 European ancestry male cases, 1,320 European ancestry female cases, 5,216 European ancestry male controls, 5,470 European ancestry female controls	NA	5p15.33	TERT	rs10069690-C	NR	1E-6	(males)	1.27	[1.15-1.40]	Affymetrix, Illumina [NR] (imputed)	N
594	chr5	1279789	1279790	rs10069690	29743610	Ostrom QT	2018-05-09	Sci Rep	Sex-specific glioma genome-wide association study identifies new risk locus at 3p21.31 in females, and finds sex-differences in risk at 8q24.21.	Glioma	4,831 European ancestry male cases, 3,206 European ancestry female cases, 5,216 European ancestry male controls, 5,470 European ancestry female controls	NA	5p15.33	TERT	rs10069690-T	NR	8E-31	(males)	1.49	[1.39-1.60]	Affymetrix, Illumina [NR] (imputed)	N
594	chr5	1279789	1279790	rs10069690	29743610	Ostrom QT	2018-05-09	Sci Rep	Sex-specific glioma genome-wide association study identifies new risk locus at 3p21.31 in females, and finds sex-differences in risk at 8q24.21.	Glioma	4,831 European ancestry male cases, 3,206 European ancestry female cases, 5,216 European ancestry male controls, 5,470 European ancestry female controls	NA	5p15.33	TERT	rs10069690-T	NR	5E-20	(females)	1.45	[1.34-1.57]	Affymetrix, Illumina [NR] (imputed)	N
594	chr5	1279789	1279790	rs10069690	29743610	Ostrom QT	2018-05-09	Sci Rep	Sex-specific glioma genome-wide association study identifies new risk locus at 3p21.31 in females, and finds sex-differences in risk at 8q24.21.	Glioblastoma	2,835 European ancestry male cases, 1,682 European ancestry female cases, 5,216 European ancestry male controls, 5,470 European ancestry female controls	NA	5p15.33	TERT	rs10069690-T	NR	6E-22	(females)	1.6	[1.45-1.76]	Affymetrix, Illumina [NR] (imputed)	N
594	chr5	1279789	1279790	rs10069690	29743610	Ostrom QT	2018-05-09	Sci Rep	Sex-specific glioma genome-wide association study identifies new risk locus at 3p21.31 in females, and finds sex-differences in risk at 8q24.21.	Glioblastoma	2,835 European ancestry male cases, 1,682 European ancestry female cases, 5,216 European ancestry male controls, 5,470 European ancestry female controls	NA	5p15.33	TERT	rs10069690-T	NR	3E-35	(males)	1.64	[1.52-1.78]	Affymetrix, Illumina [NR] (imputed)	N
594	chr5	1279789	1279790	rs10069690	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	5p15.33	TERT	rs10069690-T	0.26	8E-17	(EA)	1.06	[1.04-1.08] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
594	chr5	1279789	1279790	rs10069690	29058716	Milne RL	2017-10-23	Nat Genet	Identification of ten variants associated with risk of estrogen-receptor-negative breast cancer.	Breast cancer (estrogen-receptor negative)	14,135 European ancestry cases, 58,126 European ancestry controls	7,333 European ancestry cases, 42,468 European ancestry controls	5p15.33	TERT	rs10069690-T	0.26	2E-35		1.18	[1.15-1.21]	Illumina [~ 11500000] (imputed)	N
594	chr5	1279789	1279790	rs10069690	29058716	Milne RL	2017-10-23	Nat Genet	Identification of ten variants associated with risk of estrogen-receptor-negative breast cancer.	Breast Cancer in BRCA1 mutation carriers	7,784 European ancestry carrier cases, 7,782 European ancestry carrier controls	1,630 European ancestry carrier cases, 1,712 European ancestry carrier controls	5p15.33	TERT	rs10069690-T	0.26	4E-16		1.18	[1.14-1.23]	Illumina [~ 11500000] (imputed)	N
594	chr5	1279789	1279790	rs10069690	28346443	Melin BS	2017-03-27	Nat Genet	Genome-wide association study of glioma subtypes identifies specific differences in genetic susceptibility to glioblastoma and non-glioblastoma tumors.	Non-glioblastoma glioma	5,819 European ancestry cases, 18,190 European ancestry controls.	NA	5p15.33	TERT	rs10069690-T	0.276	1E-16		1.27	1.20-1.34	Illumina [at least 6769856] (imputed)	N
594	chr5	1279789	1279790	rs10069690	28346443	Melin BS	2017-03-27	Nat Genet	Genome-wide association study of glioma subtypes identifies specific differences in genetic susceptibility to glioblastoma and non-glioblastoma tumors.	Glioma	12,469 European ancestry cases, 18,190 European ancestry controls.	NA	5p15.33	TERT	rs10069690-T	0.276	3E-66		1.45	1.39-1.51	Illumina [at least 6887412] (imputed)	N
594	chr5	1279789	1279790	rs10069690	28346443	Melin BS	2017-03-27	Nat Genet	Genome-wide association study of glioma subtypes identifies specific differences in genetic susceptibility to glioblastoma and non-glioblastoma tumors.	Glioblastoma	6,191 European ancestry cases, 18,190 European ancestry controls.	NA	5p15.33	TERT	rs10069690-T	0.276	8E-74		1.61	1.53-1.69	Illumina [at least 6790270] (imputed)	N
594	chr5	1279789	1279790	rs10069690	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	Serous invasive ovarian cancer	14,049 European ancestry cases, 40,941 European ancestry controls	NA	5p15.33	NR	rs10069690-T	0.259806	2E-12		1.1303236	[1.09267833241685-1.16926591871766]	Illumina [11595112] (imputed)	N
594	chr5	1279789	1279790	rs10069690	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	Serous borderline ovarian cancer	1,954 European ancestry cases, 40,941 European ancestry controls	NA	5p15.33	NR	rs10069690-T	0.259806	4E-9		1.2546542	[1.16419555293272-1.35214154339342]	Illumina [11595112] (imputed)	N
594	chr5	1279789	1279790	rs10069690	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	Low-grade serous and serous borderline ovarian cancer	2,966 European ancestry cases, 40,941 European ancestry controls	NA	5p15.33	NR	rs10069690-T	0.259806	1E-9		1.2150546	[1.14168685260085-1.29313711208919]	Illumina [11595112] (imputed)	N
594	chr5	1279789	1279790	rs10069690	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	Invasive epithelial ovarian cancer	22,406 European ancestry cases, 40,941 European ancestry controls	NA	5p15.33	NR	rs10069690-T	0.259806	3E-8		1.0865872	[1.05501477967445-1.11910451351639]	Illumina [11595112] (imputed)	N
594	chr5	1279789	1279790	rs10069690	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	High-grade serous ovarian cancer	13,037 European ancestry cases, 40,941 European ancestry controls	NA	5p15.33	NR	rs10069690-T	0.259806	5E-12		1.1310111	[1.09226786405932-1.17112854934655]	Illumina [11595112] (imputed)	N
594	chr5	1279789	1279790	rs10069690	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	Epithelial ovarian cancer	16,924 European ancestry cases, 68,502 European ancestry controls	NA	5p15.33	NR	rs10069690-T	0.259806	1E-7		1.0802581	[1.04978354993499-1.11161732010102]	Illumina [11595112] (imputed)	N
594	chr5	1279789	1279790	rs10069690	28195142	Gudmundsson J	2017-02-14	Nat Commun	A genome-wide association study yields five novel thyroid cancer risk loci.	Thyroid cancer	2,637 European ancestry cases, 364 non-array typed, familial imputed Icelandic ancestry cases, 134,811 European ancestry controls, 152,739 non-array typed, familial imputed Icelandic ancestry controls.	NA	5p15.33	TERT	rs10069690-T	0.275	3E-7		1.2	1.12-1.29	Illumina [7100000] (imputed)	N
594	chr5	1279789	1279790	rs10069690	28171663	Huo D	2016-09-04	Hum Mol Genet	Genome-wide association studies in women of African ancestry identified 3q26.21 as a novel susceptibility locus for oestrogen receptor negative breast cancer.	Breast cancer (estrogen-receptor negative)	1349 African American cases, 42 African ancestry cases, 4,150 African American controls, 624 African ancestry controls	573 African American cases, 2,939 African American controls	5p15.33	TERT	rs10069690-T	0.6	2E-10		1.3	[1.20-1.41]	Illumina [16147413] (imputed)	N
594	chr5	1279789	1279790	rs10069690	28171663	Huo D	2016-09-04	Hum Mol Genet	Genome-wide association studies in women of African ancestry identified 3q26.21 as a novel susceptibility locus for oestrogen receptor negative breast cancer.	Breast cancer	3962 African American cases, 711 African ancestry cases, 4,150 African ancestry controls, 624 African ancestry controls	1,984 African American cases, 2,939 African American controls	5p15.33	TERT	rs10069690-T	0.6	5E-6		1.13	[1.07-1.19]	Illumina [16147413] (imputed)	N
594	chr5	1279789	1279790	rs10069690	26424050	Kinnersley B	2015-10-01	Nat Commun	Genome-wide association study identifies multiple susceptibility loci for glioma.	Non-glioblastoma glioma	2,364 Northern European ancestry cases, 7,435 Northern European ancestry controls	up to 1,490 European ancestry cases, up to 1,723 European ancestry controls	5p15.33	NR	rs10069690-T		8E-7		1.25	[1.15-1.37]	Illumina [at least 8427548] (imputed)	N
594	chr5	1279789	1279790	rs10069690	26424050	Kinnersley B	2015-10-01	Nat Commun	Genome-wide association study identifies multiple susceptibility loci for glioma.	Glioma	1,783 Northern European ancestry glioblastoma cases,  2,364 Northern European ancestry non-glioblastoma cases, 7,435 Northern European ancestry controls	1,490 European ancestry cases, 1,723 European ancestry control	5p15.33	NR	rs10069690-T	NR	4E-20		1.4	[1.30-1.50]	Illumina [at least 8427548] (imputed)	N
594	chr5	1279789	1279790	rs10069690	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	46,785 European ancestry cases, 42,892 European ancestry controls	NA	5p15.33	NR	rs10069690-T	0.26	2E-8		1.06	[1.04-1.09]	Affymetrix, Illumina [~ 14000000] (imputed)	N
594	chr5	1279789	1279790	rs10069690	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	15,748 European ancestry cases, 18,084 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls	5p15.33	NR	rs10069690-T	0.26	1E-8		1.06	[1.04-1.09]	Affymetrix, Illumina [~ 11600000] (imputed)	N
594	chr5	1279789	1279790	rs10069690	25581431	Kuchenbaecker KB	2015-01-12	Nat Genet	Identification of six new susceptibility loci for invasive epithelial ovarian cancer.	Epithelial ovarian cancer	4,368 European ancestry cases, 9,123 European ancestry controls,	2,462 European ancestry BRCA1 mutation carrier cases, 12,790 European ancestry BRCA1 mutation carrier controls, up to 631 European ancestry BRCA2 mutation carrier cases, 7,580 European ancestry BRCA2 mutation carrier controls, 9,627 European ancestry serous cases, 1,442 European ancestry non-serous cases, 21,722 European ancestry controls	5p15.33	TERT	rs10069690-A	0.26	9E-9		1.14	[1.10-1.19]	Illumina [up to 10962898] (imputed)	N
594	chr5	1279789	1279790	rs10069690	24325915	Purrington KS	2013-12-09	Carcinogenesis	Genome-wide association study identifies 25 known breast cancer susceptibility loci as risk factors for triple-negative breast cancer.	Breast cancer (estrogen-receptor negative, progesterone-receptor negative, and human epidermal growth factor-receptor negative)	1,529 European ancestry cases, 3,399 European ancestry controls	2,148 European ancestry cases, 1,309 European ancestry controls	5p15.33	TERT	rs10069690-A		1E-7		1.24	[1.14-1.34]	Illumina [NR] (imputed)	N
594	chr5	1279789	1279790	rs10069690	23535733	Garcia-Closas M	2013-04-01	Nat Genet	Genome-wide association studies identify four ER negative-specific breast cancer risk loci.	Breast cancer	4,193 European ancestry cases, 35,194 European ancestry controls	6,514 European ancestry cases, 41,455 European ancestry controls	5p15.33	TERT	rs10069690-T	0.321	5E-12		1.15	[1.11-1.20]	Illumina [NR]	N
594	chr5	1279789	1279790	rs10069690	23535729	Michailidou K	2013-04-01	Nat Genet	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	5p15.33	TERT	rs10069690-T	0.26	7E-9		1.06	[1.04-1.09]	Affymetrix, Illumina [~ 2600000] (imputed)	N
594	chr5	1279789	1279790	rs10069690	22037553	Haiman CA	2011-10-30	Nat Genet	A common variant at the TERT-CLPTM1L locus is associated with estrogen receptor-negative breast cancer.	Breast cancer	1,004 African American cases, 2,745 African American controls,1,718 European ancestry cases, 3,670 European ancestry controls	2,292 European ancestry cases, 16,901 European ancestry controls	5p15.33	TERT	rs10069690-T	0.26	1E-10		1.18	[1.13-1.25]	Illumina [3154485] (imputed)	N
594	chr5	1279963	1279964	rs10054203	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	151,807 East Asian ancestry individuals	NA	5p15.33	NR	rs10054203-G	0.626753	1E-12		0.033426	[0.024-0.043] SD units decrease	Affymetrix, Illumina [16710636] (imputed)	N
594	chr5	1280027	1280028	rs2242652	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 91,972 European ancestry controls	6,852 European ancestry cases, 193,117 European ancestry controls	5p15.33	NR	rs2242652-G	0.805629024	4E-9		1.1475415	[1.10-1.20]	Affymetrix, Illumina [20400945] (imputed)	N
594	chr5	1280027	1280028	rs2242652	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	5p15.33	NR	rs2242652-G	NR	8E-55		1.144	[1.12-1.16]	Affymetrix, Illumina [29235255] (imputed)	N
594	chr5	1280027	1280028	rs2242652	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	8,611 East Asian ancestry cases, 18,809 East Asian ancestry controls	NA	5p15.33	NR	rs2242652-G	0.81	7E-15		1.164	[1.12-1.21]	Affymetrix, Illumina [10186136] (imputed)	N
594	chr5	1280027	1280028	rs2242652	33293427	Emami NC	2020-12-08	Cancer Res	A large-scale association study detects novel rare variants, risk genes, functional elements, and polygenic architecture of prostate cancer susceptibility.	Prostate cancer	14,113 European ancestry cases, 194,140 European ancestry controls	NA	5p15.33	NR	rs2242652-G	NR	1E-15		1.16	NR	Affymetrix [at least 232408] (imputed)	N
594	chr5	1280027	1280028	rs2242652	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Prostate cancer	10,792 European ancestry cases, 410,350 European ancestry controls	NA	5p15.33		rs2242652-G	NR	5E-12		1.1698	NR	Affymetrix [7846216] (imputed)	N
594	chr5	1280027	1280028	rs2242652	31562322	Takata R	2019-09-27	Nat Commun	12 new susceptibility loci for prostate cancer identified by genome-wide association study in Japanese population.	Prostate cancer	5,088 Japanese ancestry cases, 10,682 Japanese ancestry controls	4,818 Japanese ancestry cases, 73,261 Japanese ancestry controls	5p15.33	TERT	rs2242652-G	0.756	8E-6		1.146	NR	Illumina [7742602] (imputed)	N
594	chr5	1280027	1280028	rs2242652	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	5p15.33	NR	rs2242652-G	0.79	4E-52		1.17	[1.15-1.20]	Illumina [20370935] (imputed)	N
594	chr5	1280027	1280028	rs2242652	27117709	Couch FJ	2016-04-27	Nat Commun	Identification of four novel susceptibility loci for oestrogen receptor negative breast cancer.	Breast cancer (estrogen-receptor negative)	4,939 European ancestry cases, 14,352 European ancestry controls	7,333 European ancestry cases, 42,468 European ancestry controls	5p15.33	TERT	rs2242652-?	0.2	3E-14		1.18	[1.13-1.23]	Illumina [10909381] (imputed)	N
594	chr5	1280027	1280028	rs2242652	27117709	Couch FJ	2016-04-27	Nat Commun	Identification of four novel susceptibility loci for oestrogen receptor negative breast cancer.	Breast cancer	4,939 European ancestry estrogen receptor-negative cases, 14,352 European ancestry controls	7,333 European ancestry estrogen receptor-negative cases, 7,797 European ancestry BRCA1 mutation carrier cases, 7,455  European ancestry BRCA1 mutation carrier controls, 42,468 European ancestry controls	5p15.33	TERT	rs2242652-?	0.22	8E-28		1.22	[1.16-1.28] (BRCA1 carriers)	Illumina [10909381] (imputed)	N
594	chr5	1280027	1280028	rs2242652	21743467	Kote-Jarai Z	2011-07-10	Nat Genet	Seven prostate cancer susceptibility loci identified by a multi-stage genome-wide association study.	Prostate cancer	6,621 European ancestry cases, 6,939 European ancestry controls	22,957 European ancestry cases, 23,234 European ancestry controls, 420 East Asian ancestry cases, 433 East Asian ancestry controls, 112 African American cases, 298 African American controls, 7,140 cases, 5,455 controls	5p15.33	TERT	rs2242652-G	0.81	3E-24		1.15	[1.11-1.19]	NR [2600000] (imputed)	N
594	chr5	1280127	1280128	rs7734992	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Interstitial lung disease	2,267 European ancestry cases, 467,560 European ancestry controls, 1,046 East Asian ancestry cases, 176,974 East Asian ancestry controls	NA	5p15.33		rs7734992-C	NR	4E-20		0.2409	[0.19-0.29] unit decrease	Affymetrix, Illumina [25843170] (imputed)	N
594	chr5	1280127	1280128	rs7734992	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Interstitial lung disease	1,046 East Asian ancestry cases, 176,974 East Asian ancestry controls	NA	5p15.33		rs7734992-C	0.371139496	4E-10		0.31560546	[0.22-0.41] unit decrease	Illumina [13429875] (imputed)	N
594	chr5	1280127	1280128	rs7734992	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Spleen volume	32,860 European ancestry individuals	NA	5p15.33	TERT	rs7734992-?	NR	5E-8		0.0389	NR L increase	Affymetrix [9390170] (imputed)	N
594	chr5	1280127	1280128	rs7734992	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	5p15.33	TERT	rs7734992-C	0.422	3E-11		0.02457254	[0.017-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
594	chr5	1280476	1280477	rs13167280	31326317	Dai J	2019-07-17	Lancet Respir Med	Identification of risk loci and a polygenic risk score for lung cancer: a large-scale prospective cohort study in Chinese populations.	Non-small cell lung cancer	13,327 Chinese ancestry cases, 13,793 European ancestry cases, 13,328 Chinese ancestry controls, 14,027 European ancestry controls	NA	5p15.33	TERT	rs13167280-A	0.17	5E-32		1.24	[1.19-1.28]	Illumina [~ 11000000] (imputed)	N
594	chr5	1280829	1280830	rs4975538	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Uterine fibroids	14,475 East Asian ancestry cases, 65,733 East Asian ancestry controls	NA	5p15.33		rs4975538-C	0.355124877	2E-9		0.09458184	[0.064-0.125] unit increase	Illumina [13401454] (imputed)	N
594	chr5	1280829	1280830	rs4975538	32386320	Eckel-Passow JE	2020-05-09	Neuro Oncol	Adult Diffuse Glioma GWAS by Molecular Subtype Identifies Variants in D2HGDH and FAM20C.	Adult diffuse glioma (TERT mutation only)	419 European and unknown ancestry cases, 1,889 European and unknown ancestry controls	159 European and unknown ancestry cases, 808 European and unknown ancestry controls	5p15.33	TERT	rs4975538-?	NR	1E-9		6.05	NR z score decrease	Illumina [NR] (imputed)	N
594	chr5	1280829	1280830	rs4975538	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Non-albumin protein levels	98,538 Japanese ancestry individuals	NA	5p15.33	TERT	rs4975538-?	NR	3E-8		0.03013	[0.019-0.041] unit decrease novel	Illumina [6108953] (imputed)	N
594	chr5	1280937	1280938	rs6897196	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Ovarian cyst	10,847 European ancestry cases, 207,622 European ancestry controls, 2,896 East Asian ancestry cases, 79,865 East Asian ancestry controls	NA	5p15.33		rs6897196-G	NR	6E-9		0.0778	[0.052-0.104] unit increase	Affymetrix, Illumina [25752875] (imputed)	N
594	chr5	1280937	1280938	rs6897196	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	78,744 East Asian ancestry individuals	NA	5p15.33	NR	rs6897196-A	0.644649	1E-10		0.041095	[0.029-0.054] SD units decrease	Affymetrix, Illumina [16289093] (imputed)	N
594	chr5	1280937	1280938	rs6897196	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Uterine fibroids	5,236 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	5p15.33	Intergenic	rs6897196-?		1E-6		1.11	[1.06-1.15]	Illumina [7645193] (imputed)	N
594	chr5	1280942	1280950	rs11278847	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Brain tumor	833 European ancestry cases, 490,709 European ancestry controls, 405 East Asian ancestry cases, 178,321 East Asian ancestry controls	NA	5p15.33		rs11278847-G	NR	4E-12		0.3027	[0.22-0.39] unit increase	Affymetrix, Illumina [25845383] (imputed)	N
594	chr5	1282318	1282319	rs7726159	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	5p15.33		rs7726159-A	NR	1E-36		0.0265	[0.022-0.031] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
594	chr5	1282318	1282319	rs7726159	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	154,355 East Asian ancestry individuals	NA	5p15.33		rs7726159-A	0.352354	3E-17		0.0316213	[0.024-0.039] unit increase	Illumina [13479091] (imputed)	N
594	chr5	1282318	1282319	rs7726159	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	5p15.33		rs7726159-A	NR	4E-74		0.0334	[0.03-0.037] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
594	chr5	1282318	1282319	rs7726159	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	153,512 East Asian ancestry individuals	NA	5p15.33		rs7726159-A	0.352745	1E-36		0.0434181	[0.037-0.05] unit increase	Illumina [13479135] (imputed)	N
594	chr5	1282318	1282319	rs7726159	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	5p15.33		rs7726159-A	NR	3E-12		0.0124	[0.0089-0.0159] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
594	chr5	1282318	1282319	rs7726159	33527407	Truong T	2021-02-02	Int J Cancer	Multiethnic genome-wide association study of differentiated thyroid cancer in the EPITHYR consortium.	Differentiated thyroid cancer	1,554 European ancestry cases, 1,973 European ancestry controls, 301 Oceanian ancestry cases, 348 Oceanian ancestry controls	NA	5p15.33	NR	rs7726159-A	0.39	1E-6				Illumina [6479975] (imputed)	N
594	chr5	1282318	1282319	rs7726159	33527407	Truong T	2021-02-02	Int J Cancer	Multiethnic genome-wide association study of differentiated thyroid cancer in the EPITHYR consortium.	Differentiated thyroid cancer	1,554 European ancestry cases, 1,973 European ancestry controls	2,229 European ancestry cases, 2,059 European ancestry controls	5p15.33	NR	rs7726159-A	0.35	5E-6		1.17	[1.09-1.25]	Illumina [9673063] (imputed)	N
594	chr5	1282318	1282319	rs7726159	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	5p15.33	TERT	rs7726159-A	0.326796	3E-10		0.014858639	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
594	chr5	1282318	1282319	rs7726159	27117709	Couch FJ	2016-04-27	Nat Commun	Identification of four novel susceptibility loci for oestrogen receptor negative breast cancer.	Breast cancer (estrogen-receptor negative)	4,939 European ancestry cases, 14,352 European ancestry controls	7,333 European ancestry cases, 42,468 European ancestry controls	5p15.33	TERT	rs7726159-?	0.34	2E-6		1.09	[1.05-1.13]	Illumina [10909381] (imputed)	N
594	chr5	1282318	1282319	rs7726159	27117709	Couch FJ	2016-04-27	Nat Commun	Identification of four novel susceptibility loci for oestrogen receptor negative breast cancer.	Breast cancer	4,939 European ancestry estrogen receptor-negative cases, 14,352 European ancestry controls	7,333 European ancestry estrogen receptor-negative cases, 7,797 European ancestry BRCA1 mutation carrier cases, 7,455  European ancestry BRCA1 mutation carrier controls, 42,468 European ancestry controls	5p15.33	TERT	rs7726159-?	0.35	3E-8		1.07	[1.02-1.11] (BRCA1 carriers)	Illumina [10909381] (imputed)	N
594	chr5	1282413	1282414	rs7725218	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	82,810 East Asian ancestry individuals	NA	5p15.33		rs7725218-A	0.352463	1E-15		0.0407721	[0.031-0.051] unit increase	Illumina [13467171] (imputed)	N
594	chr5	1282413	1282414	rs7725218	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	5p15.33		rs7725218-A	NR	3E-9		0.0129	[0.0086-0.0172] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
594	chr5	1282413	1282414	rs7725218	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	5p15.33	TERT	rs7725218-A	0.391	2E-17		1.132	[1.1-1.16]	Illumina [11270530] (imputed)	N
594	chr5	1282413	1282414	rs7725218	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	5p15.33	TERT	rs7725218-G	0.661578	2E-9		0.012181	[0.0082-0.0161] unit increase	Affymetrix [NR] (imputed)	N
594	chr5	1282413	1282414	rs7725218	31710517	Allen RJ	2019-11-11	Am J Respir Crit Care Med	Genome-Wide Association Study of Susceptibility to Idiopathic Pulmonary Fibrosis.	Idiopathic pulmonary fibrosis	2,668 European ancestry cases, 8,591 European ancestry controls	1,456 European ancestry cases, 11,874 European ancestry controls	5p15.33	TERT	rs7725218-G	0.675	2E-20		1.3888888	[1.3-1.49]	Affymetrix, Illumina [10790934] (imputed)	N
594	chr5	1282413	1282414	rs7725218	27197191	Fehringer G	2016-04-20	Cancer Res	Cross-Cancer Genome-Wide Analysis of Lung, Ovary, Breast, Prostate, and Colorectal Cancer Reveals Novel Pleiotropic Associations.	Cancer (pleiotropy)	5,020 European ancestry lung cancer cases, 3,718 European ancestry lung adenocarcinoma cases, 3,422 European ancestry lung squamous cell carcinoma cases, 15,414 European ancestry colorectal cancer cases, 10,809 European ancestry breast cancer cases, 4,939 European ancestry estrogen receptor negative breast cancer cases, 1,098 European ancestry ovarian cancer cases, 2,556 European ancestry serous ovarian cancer cases, 715 European ancestry ovarian endometrioid carcinoma cases, 9,710 European ancestry prostate cancer cases, 4,450 European ancestry aggressive prostate cancer cases,  61,820 European ancestry controls	NA	5p15.33	TERT	rs7725218-A	NR	2E-10	(subset analysis)			Affymetrix, Illumina [9916564] (imputed)	N
594	chr5	1282413	1282414	rs7725218	25939597	Berndt SI	2015-05-05	Nat Commun	Two susceptibility loci identified for prostate cancer aggressiveness.	Prostate cancer	4,600 European ancestry cases, 2,941 European ancestry controls	7,779 European ancestry cases, 7,623 European ancestry controls	5p15.33	TERT, hTERT	rs7725218-G	0.64	3E-11		1.15	[1.10-1.19]	Illumina [1531807] (imputed)	N
594	chr5	1283754	1283755	rs72709458	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	5p15.33	NR	rs72709458-C	0.793185	2E-9		0.00572171	[0.0037-0.0078] unit increase	Affymetrix [16582909] (imputed)	N
594	chr5	1283754	1283755	rs72709458	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	5p15.33	NR	rs72709458-C	0.793185	5E-8		0.0058458	[0.0036-0.0081] unit increase	Affymetrix [16582965] (imputed)	N
594	chr5	1283754	1283755	rs72709458	31649266	Gallagher CS	2019-10-24	Nat Commun	Genome-wide association and epidemiological analyses reveal common genetic origins between uterine leiomyomata and endometriosis.	Uterine fibroids and heavy menstrual bleeding	3,409 European ancestry cases, 199,171 European ancestry controls	NA	5p15.33	NR	rs72709458-T	0.21	4E-8		1.16	[1.11-1.23]	Affymetrix [10308721] (imputed)	N
594	chr5	1283754	1283755	rs72709458	31649266	Gallagher CS	2019-10-24	Nat Commun	Genome-wide association and epidemiological analyses reveal common genetic origins between uterine leiomyomata and endometriosis.	Uterine fibroids	20,406 European ancestry cases, 223,918 European ancestry controls	15,068 European ancestry cases, 43,587 European ancestry controls	5p15.33	TERT	rs72709458-T	0.23	5E-21		1.1	[1.08-1.13]	Affymetrix, Illumina [8662096] (imputed)	N
594	chr5	1283754	1283755	rs72709458	31649266	Gallagher CS	2019-10-24	Nat Commun	Genome-wide association and epidemiological analyses reveal common genetic origins between uterine leiomyomata and endometriosis.	Uterine fibroids	20,406 European ancestry cases, 223,918 European ancestry controls	15,068 European ancestry cases, 43,587 European ancestry controls	5p15.33		rs72709458-T	0.2114	5E-21		0.0983	[0.078-0.119] unit increase	Affymetrix, Illumina [8662096] (imputed)	N
594	chr5	1283754	1283755	rs72709458	31649266	Gallagher CS	2019-10-24	Nat Commun	Genome-wide association and epidemiological analyses reveal common genetic origins between uterine leiomyomata and endometriosis.	Heavy menstrual bleeding	9,813 European ancestry cases, 210,946 European ancestry controls	NA	5p15.33	NR	rs72709458-T	0.21	2E-8		1.13	[1.08-1.17]	Affymetrix [10308721] (imputed)	N
594	chr5	1283754	1283755	rs72709458	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	5p15.33	TERT	rs72709458-T	NR	7E-7		1.0683	NR	Affymetrix, Illumina [8278136] (imputed)	N
594	chr5	1283754	1283755	rs72709458	26424050	Kinnersley B	2015-10-01	Nat Commun	Genome-wide association study identifies multiple susceptibility loci for glioma.	Glioblastoma	1,783 Northern European ancestry cases, 7,435 Northern European ancestry controls	up to 1,490 European ancestry cases, up to 1,723 European ancestry controls	5p15.33	NR	rs72709458-T	NR	6E-24		1.68	[1.52-1.86]	Illumina [at least 8427548] (imputed)	N
594	chr5	1284134	1284135	rs4449583	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	150,708 East Asian ancestry individuals	NA	5p15.33	NR	rs4449583-C	0.666586	1E-31		0.051288	[0.043-0.06] SD units decrease	Affymetrix, Illumina [16709798] (imputed)	N
594	chr5	1284134	1284135	rs4449583	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	121,047 East Asian ancestry individuals	NA	5p15.33	NR	rs4449583-C	0.668043	4E-47		0.070537	[0.061-0.08] SD units increase	Affymetrix, Illumina [16286195] (imputed)	N
594	chr5	1284134	1284135	rs4449583	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5p15.33	NR	rs4449583-T	0.326582	1E-13				Affymetrix, Illumina [24558453] (imputed)	N
594	chr5	1284134	1284135	rs4449583	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	5p15.33	NR	rs4449583-T	0.327708	2E-12		0.014592	[0.011-0.019] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
594	chr5	1284134	1284135	rs4449583	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	White blood cell count	107,964 Japanese ancestry individuals	NA	5p15.33	TERT	rs4449583-?	NR	2E-10		0.03137	[0.022-0.041] unit increase novel	Illumina [6108953] (imputed)	N
594	chr5	1284134	1284135	rs4449583	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Red blood cell count	108,794 Japanese ancestry individuals	NA	5p15.33	TERT	rs4449583-?	NR	1E-22		0.04855	[0.039-0.058] unit increase novel	Illumina [6108953] (imputed)	N
594	chr5	1284134	1284135	rs4449583	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Neutrophil count	62,076 Japanese ancestry individuals	NA	5p15.33	TERT	rs4449583-?	NR	2E-10		0.04247	[0.029-0.056] unit increase novel	Illumina [6108953] (imputed)	N
594	chr5	1284134	1284135	rs4449583	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular volume	108,256 Japanese ancestry individuals	NA	5p15.33	TERT	rs4449583-?	NR	4E-41		0.06654	[0.057-0.076] unit decrease novel	Illumina [6108953] (imputed)	N
594	chr5	1284134	1284135	rs4449583	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin	108,054 Japanese ancestry individuals	NA	5p15.33	TERT	rs4449583-?	NR	4E-33		0.05941	[0.05-0.069] unit decrease novel	Illumina [6108953] (imputed)	N
594	chr5	1284134	1284135	rs4449583	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	5p15.33	TERT	rs4449583-T	0.3259	2E-25		0.03983159	[0.032-0.047] unit increase	Affymetrix [~ 2500000] (imputed)	N
594	chr5	1284134	1284135	rs4449583	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	5p15.33	TERT	rs4449583-T	0.3258	1E-35		0.04728492	[0.04-0.055] unit decrease	Affymetrix [~ 2500000] (imputed)	N
594	chr5	1284652	1284653	rs139996880	28212542	Ransohoff KJ	2017-02-09	Oncotarget	Two-stage genome-wide association study identifies a novel susceptibility locus associated with melanoma.	Melanoma	4,842 European ancestry cases, 286,565 European ancestry controls	1,804 European ancestry cases, 1,026 European ancestry controls	5p15.33	TERT	rs139996880-A	0.16	7E-12		1.26	[1.18-1.34]	Illumina [at least 560000] (imputed)	N
594	chr5	1284652	1284653	rs139996880	26956414	Berndt SI	2016-03-09	Nat Commun	Meta-analysis of genome-wide association studies discovers multiple loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	3,100 European ancestry cases, 7,667 European ancestry controls	1,958 cases,  5,530 controls	5p15.33	TERT	rs139996880-A	0.165	6E-8		1.29	[1.18-1.42]	Affymetrix, Illumina [~ 8500000] (imputed)	N
594	chr5	1285161	1285162	rs10866498	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	145,648 East Asian ancestry individuals	NA	5p15.33	NR	rs10866498-C	0.409274	3E-37		0.052707	[0.045-0.061] SD units increase	Affymetrix, Illumina [16710488] (imputed)	N
594	chr5	1285973	1285974	rs7705526	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein THPO	5,364 Icelandic ancestry individuals	NA	5p15.33		rs7705526-A	0.3563	5E-12		0.136533	[0.098-0.175] unit decrease	Illumina [7506463] (imputed)	N
594	chr5	1285973	1285974	rs7705526	35023831	Chong M	2022-01-13	Elife	GWAS and ExWAS of blood Mitochondrial DNA copy number identifies 71 loci and highlights a potential causal role in dementia.	Mitochondrial DNA copy number	395,718 British, Irish, Other White, South Asian, African ancestry individuals	NA	5p15.33	NR	rs7705526-A	0.321486	6E-15		0.0178	[0.013-0.022] unit increase	Affymetrix [23037915] (imputed)	N
594	chr5	1285973	1285974	rs7705526	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	5p15.33		rs7705526-A	NR	1E-90		0.0415	[0.037-0.046] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
594	chr5	1285973	1285974	rs7705526	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	5p15.33		rs7705526-A	0.354183	2E-41		0.048757	[0.042-0.056] unit increase	Illumina [13478928] (imputed)	N
594	chr5	1285973	1285974	rs7705526	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	5p15.33		rs7705526-A	NR	4E-45		0.0323	[0.028-0.037] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
594	chr5	1285973	1285974	rs7705526	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	5p15.33		rs7705526-A	NR	3E-105		0.0467	[0.043-0.051] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
594	chr5	1285973	1285974	rs7705526	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	5p15.33		rs7705526-A	0.35357	2E-58		0.0632816	[0.056-0.071] unit decrease	Illumina [13476266] (imputed)	N
594	chr5	1285973	1285974	rs7705526	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	5p15.33		rs7705526-A	NR	2E-95		0.0445	[0.04-0.049] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
594	chr5	1285973	1285974	rs7705526	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	5p15.33		rs7705526-A	0.353264	7E-49		0.0582783	[0.051-0.066] unit decrease	Illumina [13476299] (imputed)	N
594	chr5	1285973	1285974	rs7705526	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	5p15.33		rs7705526-C	0.675	1E-32				Affymetrix [10369434] (imputed)	N
594	chr5	1285973	1285974	rs7705526	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	5p15.33		rs7705526-C	0.675	1E-12				Affymetrix [10369434] (imputed)	N
594	chr5	1285973	1285974	rs7705526	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation Hannum age acceleration	34,449 European ancestry individuals, 6,148 African American individuals	NA	5p15.33	NR	rs7705526-?	NR	4E-9				Affymetrix, Illumina [6210504] (imputed)	N
594	chr5	1285973	1285974	rs7705526	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	5p15.33		rs7705526-C	0.674	2E-57		0.19	[0.17-0.21] % increase	Affymetrix [NR] (imputed)	N
594	chr5	1285973	1285974	rs7705526	33549134	Adolphe C	2021-02-06	Genome Med	Genetic and functional interaction network analysis reveals global enrichment of regulatory T cell genes influencing basal cell carcinoma susceptibility.	Basal cell carcinoma	17,416 European ancestry cases, 375,455 European ancestry controls	NA	5p15.33	TERT	rs7705526-A	0.321483	2E-12		0.082587235	[0.06-0.106] unit increase	Affymetrix [7260263] (imputed)	N
594	chr5	1285973	1285974	rs7705526	33057200	Bao EL	2020-10-14	Nature	Inherited myeloproliferative neoplasm risk affects haematopoietic stem cells.	Myeloproliferative neoplasms	1,086 British ancestry cases, 407,155 British ancestry controls, 640 Finnish ancestry cases, 176,259 Finnish ancestry controls	NA	5p15.33	TERT	rs7705526-A	0.3358	5E-54		1.58	1.49-1.67	Affymetrix [6845584] (imputed)	N
594	chr5	1285973	1285974	rs7705526	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Non-small cell lung cancer	27,120 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	5p15.33	NR	rs7705526-A	NR	1E-42		1.2	[1.17-1.24]	NR [NR] (imputed)	N
594	chr5	1285973	1285974	rs7705526	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Lung adenocarcinoma	15,581 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	5p15.33	NR	rs7705526-A	NR	4E-65		1.31	[1.27-1.35]	NR [NR] (imputed)	N
594	chr5	1285973	1285974	rs7705526	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	5p15.33	TERT	rs7705526-A	0.325949	8E-18		0.022161977	[0.017-0.027] unit increase	Affymetrix [93095623] (imputed)	N
594	chr5	1285973	1285974	rs7705526	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	5p15.33	TERT	rs7705526-A	0.325947	1E-32		0.030702785	[0.026-0.036] unit increase	Affymetrix [93095623] (imputed)	N
594	chr5	1285973	1285974	rs7705526	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	5p15.33	TERT	rs7705526-A	0.325722	2E-58		0.04245118	[0.037-0.048] unit increase	Affymetrix [93095623] (imputed)	N
594	chr5	1285973	1285974	rs7705526	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	5p15.33	TERT	rs7705526-A	0.325701	4E-34		0.03194412	[0.027-0.037] unit increase	Affymetrix [93095623] (imputed)	N
594	chr5	1285973	1285974	rs7705526	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	5p15.33	TERT	rs7705526-A	0.325996	1E-11		0.017452393	[0.012-0.023] unit increase	Affymetrix [93095623] (imputed)	N
594	chr5	1285973	1285974	rs7705526	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	5p15.33	TERT	rs7705526-A	0.325993	4E-22		0.024958521	[0.02-0.03] unit increase	Affymetrix [93095623] (imputed)	N
594	chr5	1285973	1285974	rs7705526	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	5p15.33	TERT	rs7705526-A	0.325948	8E-37		0.0331122	[0.028-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
594	chr5	1285973	1285974	rs7705526	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	5p15.33	TERT	rs7705526-A	0.325846	7E-32		0.030867063	[0.026-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
594	chr5	1285973	1285974	rs7705526	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	5p15.33	TERT	rs7705526-A	0.325898	5E-45		0.049392	[0.045-0.054] unit decrease	Affymetrix [93095623] (imputed)	N
594	chr5	1285973	1285974	rs7705526	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	5p15.33	TERT	rs7705526-A	0.325859	2E-38		0.03338528	[0.028-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
594	chr5	1285973	1285974	rs7705526	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	5p15.33	TERT	rs7705526-A	0.325943	8E-10		0.015807394	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
594	chr5	1285973	1285974	rs7705526	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5p15.33	NR	rs7705526-A	0.326633	2E-52				Affymetrix, Illumina [24649327] (imputed)	N
594	chr5	1285973	1285974	rs7705526	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	5p15.33	NR	rs7705526-A	0.327218	8E-43		0.029089	[0.025-0.033] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
594	chr5	1285973	1285974	rs7705526	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5p15.33	NR	rs7705526-A	0.326792	5E-108				Affymetrix, Illumina [24332387] (imputed)	N
594	chr5	1285973	1285974	rs7705526	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	5p15.33	NR	rs7705526-A	0.327194	3E-81		0.040124	[0.036-0.044] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
594	chr5	1285973	1285974	rs7705526	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	5p15.33	NR	rs7705526-A	0.327001	5E-88		0.041989	[0.038-0.046] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
594	chr5	1285973	1285974	rs7705526	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5p15.33	NR	rs7705526-A	0.325839	4E-61				Affymetrix, Illumina [23114412] (imputed)	N
594	chr5	1285973	1285974	rs7705526	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	5p15.33	NR	rs7705526-A	0.327035	9E-54		0.033578	[0.029-0.038] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
594	chr5	1285973	1285974	rs7705526	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5p15.33	NR	rs7705526-A	0.326136	6E-163				Affymetrix, Illumina [24246363] (imputed)	N
594	chr5	1285973	1285974	rs7705526	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	5p15.33	NR	rs7705526-A	0.32714	3E-122		0.048592	[0.045-0.053] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
594	chr5	1285973	1285974	rs7705526	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5p15.33	NR	rs7705526-A	0.326409	8E-137				Affymetrix, Illumina [20825802] (imputed)	N
594	chr5	1285973	1285974	rs7705526	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	5p15.33	NR	rs7705526-A	0.326974	2E-103		0.045218	[0.041-0.049] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
594	chr5	1285973	1285974	rs7705526	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	119,629 East Asian ancestry individuals	NA	5p15.33	NR	rs7705526-C	0.667675	2E-39		0.063458	[0.054-0.073] SD units increase	Affymetrix, Illumina [16286228] (imputed)	N
594	chr5	1285973	1285974	rs7705526	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous malignant melanoma	36,760 European ancestry cases, 375,188 European ancestry controls	NA	5p15.33	TERT	rs7705526-A	0.3294	2E-14		1.0884947	NR	Affymetrix, Illumina [NR] (imputed)	N
594	chr5	1285973	1285974	rs7705526	32109421	Li C	2020-02-20	Am J Hum Genet	Genome-Wide Association Analysis in Humans Links Nucleotide Metabolism to Leukocyte Telomere Length.	Leukocyte telomere length	78,592 European ancestry individuals	NA	5p15.33	TERT	rs7705526-A	0.33	5E-45		0.082	[0.07-0.094] unit increase	Affymetrix, Illumina, Perlegen [up to 30071938] (imputed)	N
594	chr5	1285973	1285974	rs7705526	31326317	Dai J	2019-07-17	Lancet Respir Med	Identification of risk loci and a polygenic risk score for lung cancer: a large-scale prospective cohort study in Chinese populations.	Non-small cell lung cancer	13,327 Chinese ancestry cases, 13,793 European ancestry cases, 13,328 Chinese ancestry controls, 14,027 European ancestry controls	NA	5p15.33	NR	rs7705526-A	0.41	4E-41	(East Asian)	1.31	[1.26-1.36]	Illumina [~ 11000000] (imputed)	N
594	chr5	1285973	1285974	rs7705526	31326317	Dai J	2019-07-17	Lancet Respir Med	Identification of risk loci and a polygenic risk score for lung cancer: a large-scale prospective cohort study in Chinese populations.	Lung adenocarcinoma	8,762 Chinese ancestry cases, 6,819 European ancestry cases, 13,328 Chinese ancestry controls, 14,027 European ancestry controls	NA	5p15.33	NR	rs7705526-A	0.41	3E-52	(East Asian)	1.4	[1.34-1.46]	Illumina [~ 11000000] (imputed)	N
594	chr5	1285973	1285974	rs7705526	31171785	Dorajoo R	2019-06-06	Nat Commun	Loci for human leukocyte telomere length in the Singaporean Chinese population and trans-ethnic genetic studies.	Leukocyte telomere length	16,759 Singaporean Han Chinese ancestry individuals	6,337 Singaporean Chinese ancestry individuals, up to 37,505 European ancestry individuals	5p15.33	TERT	rs7705526-C	NR	4E-67		0.107	NR unit decrease	Illumina [6407959] (imputed)	N
594	chr5	1285973	1285974	rs7705526	31171785	Dorajoo R	2019-06-06	Nat Commun	Loci for human leukocyte telomere length in the Singaporean Chinese population and trans-ethnic genetic studies.	Leukocyte telomere length	16,759 Singaporean Han Chinese ancestry individuals	6,337 Singaporean Chinese ancestry individuals, up to 37,505 European ancestry individuals	5p15.33	TERT	rs7705526-C	NR	3E-38	(East Asian)	0.118	NR unit decrease	Illumina [6407959] (imputed)	N
594	chr5	1285973	1285974	rs7705526	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	5p15.33		rs7705526-?	NR	4E-29				NR [~ 8900000] (imputed)	N
594	chr5	1285973	1285974	rs7705526	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	5p15.33		rs7705526-?	NR	2E-69				NR [~ 8900000] (imputed)	N
594	chr5	1285973	1285974	rs7705526	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	5p15.33		rs7705526-?	NR	1E-98				NR [~ 8900000] (imputed)	N
594	chr5	1285973	1285974	rs7705526	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	5p15.33		rs7705526-?	NR	1E-9				NR [~ 8900000] (imputed)	N
594	chr5	1285973	1285974	rs7705526	29151059	Delgado DA	2017-11-18	J Med Genet	Genome-wide association study of telomere length among South Asians identifies a second RTEL1 association signal.	Telomere length	5,075 Bangladeshi ancestry individuals	NA	5p15.33	TERT	rs7705526-A	0.43	6E-6		0.09	[0.051-0.129] unit increase	Illumina [~ 6300000] (imputed)	N
594	chr5	1285973	1285974	rs7705526	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in never smokers	2,355 European ancestry cases,  7,504 European ancestry controls	NA	5p15.33	TERT	rs7705526-A	0.346810832	7E-8		1.2275395	[1.139566941-1.322303439]	Illumina [10439017] (imputed)	N
594	chr5	1285973	1285974	rs7705526	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung adenocarcinoma	11,273 European ancestry cases,  55,483 European ancestry controls	NA	5p15.33	TERT	rs7705526-A	0.342168639	4E-35		1.2488487	[1.20564202-1.293603768]	Illumina [10439017] (imputed)	N
594	chr5	1285973	1285974	rs7705526	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	Serous invasive ovarian cancer	14,049 European ancestry cases, 40,941 European ancestry controls	NA	5p15.33	NR	rs7705526-A	0.332078	6E-10		1.1067635	[1.07188995128973-1.14277166876843]	Illumina [11595112] (imputed)	N
594	chr5	1285973	1285974	rs7705526	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	Serous borderline ovarian cancer	1,954 European ancestry cases, 40,941 European ancestry controls	NA	5p15.33	NR	rs7705526-A	0.332078	6E-19		1.3829999	[1.28830538018993-1.48465482476452]	Illumina [11595112] (imputed)	N
594	chr5	1285973	1285974	rs7705526	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	Low-grade serous and serous borderline ovarian cancer	2,966 European ancestry cases, 40,941 European ancestry controls	NA	5p15.33	NR	rs7705526-A	0.332078	2E-20		1.3236618	[1.24799798080348-1.40391301421926]	Illumina [11595112] (imputed)	N
594	chr5	1285973	1285974	rs7705526	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	Invasive epithelial ovarian cancer	22,406 European ancestry cases, 40,941 European ancestry controls	NA	5p15.33	NR	rs7705526-A	0.332078	7E-10		1.0913801	[1.06151189081851-1.12208885346329]	Illumina [11595112] (imputed)	N
594	chr5	1285973	1285974	rs7705526	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	High-grade serous ovarian cancer	13,037 European ancestry cases, 40,941 European ancestry controls	NA	5p15.33	NR	rs7705526-A	0.332078	2E-8		1.099452	[1.06380317084564-1.13629550714478]	Illumina [11595112] (imputed)	N
594	chr5	1285973	1285974	rs7705526	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	Epithelial ovarian cancer	16,924 European ancestry cases, 68,502 European ancestry controls	NA	5p15.33	NR	rs7705526-A	0.332078	8E-8		1.0766991	[1.04796689850078-1.10621911687371]	Illumina [11595112] (imputed)	N
594	chr5	1285973	1285974	rs7705526	28165464	Law PJ	2017-02-06	Nat Commun	Genome-wide association analysis implicates dysregulation of immunity genes in chronic lymphocytic leukaemia.	Chronic lymphocytic leukemia	4,478 European ancestry cases and 13,213 European ancestry controls.	1,722 European ancestry cases and 4,385 European ancestry controls.	5p15.33	TERT	rs7705526-A	NR	6E-10		1.18	[1.12-1.25]	Affymetrix, Illumina [> 10000000] (imputed)	N
594	chr5	1285973	1285974	rs7705526	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	5p15.33	TERT	rs7705526-A	0.329	8E-18		0.03350265	[0.026-0.041] unit increase	Affymetrix [~ 2500000] (imputed)	N
594	chr5	1285973	1285974	rs7705526	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	5p15.33	TERT	rs7705526-A	0.329	6E-19		0.03464376	[0.027-0.042] unit increase	Affymetrix [~ 2500000] (imputed)	N
594	chr5	1285973	1285974	rs7705526	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	5p15.33	TERT	rs7705526-A	0.3291	1E-19		0.03527305	[0.028-0.043] unit increase	Affymetrix [~ 2500000] (imputed)	N
594	chr5	1285973	1285974	rs7705526	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	5p15.33	TERT	rs7705526-A	0.3288	2E-41		0.05365946	[0.046-0.061] unit increase	Affymetrix [~ 2500000] (imputed)	N
594	chr5	1285973	1285974	rs7705526	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	5p15.33	TERT	rs7705526-A	0.3291	8E-20		0.03545307	[0.028-0.043] unit increase	Affymetrix [~ 2500000] (imputed)	N
594	chr5	1285973	1285974	rs7705526	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	5p15.33	TERT	rs7705526-A	0.329	6E-19		0.03473723	[0.027-0.042] unit increase	Affymetrix [~ 2500000] (imputed)	N
594	chr5	1285973	1285974	rs7705526	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	5p15.33	TERT	rs7705526-A	0.329	1E-18		0.03445749	[0.027-0.042] unit increase	Affymetrix [~ 2500000] (imputed)	N
594	chr5	1286515	1286516	rs2736100	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	Intrinsic epigenetic age acceleration	34,461 European ancestry individuals	NA	5p15.33	NR	rs2736100-A	0.4977	3E-11		0.2024	[0.14-0.26] unit decrease	Affymetrix, Illumina [7567980] (imputed)	N
594	chr5	1286515	1286516	rs2736100	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	5p15.33	TERT	rs2736100-A	0.498344	5E-10		0.0138212275	[0.0095-0.0182] unit increase	Affymetrix [93095623] (imputed)	N
594	chr5	1286515	1286516	rs2736100	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5p15.33	NR	rs2736100-A	0.522801	8E-122				Affymetrix, Illumina [24588908] (imputed)	N
594	chr5	1286515	1286516	rs2736100	32518416	Dawoud AAZ	2020-06-10	Leukemia	Clonal myelopoiesis in the UK Biobank cohort: ASXL1 mutations are strongly associated with smoking.	Myeloid clonal hematopoiesis	1,166 cases, 30,892 controls	NA	5p15.33	NR	rs2736100-C	0.5013	3E-12		1.345895	NR	Affymetrix [265112]	N
594	chr5	1286515	1286516	rs2736100	32386320	Eckel-Passow JE	2020-05-09	Neuro Oncol	Adult Diffuse Glioma GWAS by Molecular Subtype Identifies Variants in D2HGDH and FAM20C.	Adult diffuse glioma (IDH wildtype)	698 European and unknown ancestry cases, 1,889 European and unknown ancestry controls	409 European and unknown ancestry cases, 808 European and unknown ancestry controls	5p15.33	TERT	rs2736100-?	NR	1E-16		8.283	NR z score decrease	Illumina [NR] (imputed)	N
594	chr5	1286515	1286516	rs2736100	30714141	Chen H	2019-02-04	Int J Cancer	Two novel genetic variants in the STK38L and RAB27A genes are associated with glioma susceptibility.	Glioma	992 Han Chinese ancestry cases, 1,008 Han Chinese ancestry controls	2,105 Han Chinese ancestry cases, 3,374 Han Chinese ancestry controls	5p15.33	TERT	rs2736100-C	0.59	2E-12		1.27	[1.18-1.35]	Illumina [1889625] (imputed)	N
594	chr5	1286515	1286516	rs2736100	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Platelet count	108,208 Japanese ancestry individuals	NA	5p15.33	TERT	rs2736100-?	NR	8E-25		0.04449	[0.036-0.053] unit decrease novel	Illumina [6108953] (imputed)	N
594	chr5	1286515	1286516	rs2736100	28604732	Wang Z	2017-06-12	Nat Genet	Meta-analysis of five genome-wide association studies identifies multiple new loci associated with testicular germ cell tumor.	Testicular germ cell tumor	3,558 European ancestry cases, 13,970 European ancestry controls	NA	5p15.33	TERT, hTERT	rs2736100-A	0.5	8E-20		1.29	1.22-1.37	Illumina [9210350] (imputed)	N
594	chr5	1286515	1286516	rs2736100	28604728	Litchfield K	2017-06-12	Nat Genet	Identification of 19 new risk loci and potential regulatory mechanisms influencing susceptibility to testicular germ cell tumor.	Testicular germ cell tumor	5,518 European ancestry cases, 19,055 European ancestry controls	1,801 European ancestry cases, 4,027 European ancestry controls	5p15.33	TERT	rs2736100-A	0.51	9E-25		1.28	[1.24-1.33]	Illumina [at least 371504] (imputed)	N
594	chr5	1286515	1286516	rs2736100	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular volume	up to 29,946 European ancestry individuals, up to 6150 African American individuals, 15,074 East Asian individuals.	16,389 individuals of European and African American ancestry.	5p15.33	TERT	rs2736100-A	NR	3E-6	(Asian)	0.0028	[0.0016-0.004] unit increase	NR [2500000] (imputed)	N
594	chr5	1286515	1286516	rs2736100	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular volume	up to 29,946 European ancestry individuals, up to 6150 African American individuals, 15,074 East Asian individuals.	16,389 individuals of European and African American ancestry.	5p15.33	TERT	rs2736100-?	NR	2E-11				NR [2500000] (imputed)	N
594	chr5	1286515	1286516	rs2736100	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular hemoglobin	up to 21,020 European ancestry individuals, up to 3,621 African American individuals, up to 15,062 East Asian individuals.	16,389 individuals of European and African American ancestry.	5p15.33	TERT	rs2736100-?	NR	1E-8				NR [2500000] (imputed)	N
594	chr5	1286515	1286516	rs2736100	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	5p15.33	TERT	rs2736100-A	0.4984	3E-20		0.0335519	[0.026-0.041] unit decrease	Affymetrix [~ 2500000] (imputed)	N
594	chr5	1286515	1286516	rs2736100	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	5p15.33	TERT	rs2736100-A	0.4982	5E-34		0.04294034	[0.036-0.05] unit increase	Affymetrix [~ 2500000] (imputed)	N
594	chr5	1286515	1286516	rs2736100	27501781	Shiraishi K	2016-08-09	Nat Commun	Association of variations in HLA class II and other loci with susceptibility to EGFR-mutated lung adenocarcinoma.	EGFR mutation-positive lung adenocarcinoma	663 Japanese ancestry cases, 4,367 Japanese ancestry controls	2,510 Japanese ancestry cases, 10,791 Japanese ancestry controls	5p15.33	TERT	rs2736100-G	0.387	2E-31		1.42	[1.34-1.50]	Illumina [NR] (imputed)	N
594	chr5	1286515	1286516	rs2736100	24908248	Walsh KM	2014-06-08	Nat Genet	Variants near TERT and TERC influencing telomere length are associated with high-grade glioma risk.	Glioma (high-grade)	1,013 European ancestry cases, 6,595 European ancestry controls	631 European ancestry cases, 1,141 European ancestry controls	5p15.33	TERT	rs2736100-C	0.51	1E-15		1.39	[1.28-1.50]	Affymetrix, Illumina [2362330] (imputed)	N
594	chr5	1286515	1286516	rs2736100	24465473	Liu Y	2014-01-21	PLoS One	A genome-wide association study identifies a locus on TERT for mean telomere length in Han Chinese.	Telomere length	2,632 Han Chinese ancestry individuals	3,917 Han Chinese ancestry individuals, 696 European ancestry individuals	5p15.33	TERT	rs2736100-C	NR	4E-6		0.0808	[NR] unit increase	Affymetrix [585206]	N
594	chr5	1286515	1286516	rs2736100	23583980	Fingerlin TE	2013-04-14	Nat Genet	Genome-wide association study identifies multiple susceptibility loci for pulmonary fibrosis.	Interstitial lung disease	1,161 European ancestry cases, 4,683 European ancestry controls	876 European ancestry cases, 1,890 European ancestry controls	5p15.33	TERT	rs2736100-A	0.49	2E-19		1.37	[1.27-1.49]	Illumina [439828]	N
594	chr5	1286515	1286516	rs2736100	23143601	Lan Q	2012-11-11	Nat Genet	Genome-wide association analysis identifies new lung cancer susceptibility loci in never-smoking women in Asia.	Lung cancer	5,510 East Asian ancestry cases, 4,544 East Asian ancestry controls	1,099 East Asian ancestry cases, 2,913 East Asian ancestry controls	5p15.33	TERT, hTERT	rs2736100-G	0.40	4E-27		1.38	[1.30-1.47]	Illumina [596032]	N
594	chr5	1286515	1286516	rs2736100	22886559	Rajaraman P	2012-08-11	Hum Genet	Genome-wide association study of glioma and meta-analysis.	Glioma	1,856 European ancestry cases, 4,955 European ancestry controls	5,015 European ancestry cases, 11,601 European ancestry controls	5p15.33	TERT	rs2736100-G	0.494	4E-9		1.3	[1.19-1.41]	Illumina [559977]	N
594	chr5	1286515	1286516	rs2736100	21827660	Yang TH	2011-08-09	BMC Med Genomics	Combinations of newly confirmed Glioma-Associated loci link regions on chromosomes 1 and 9 to increased disease risk.	Glioma	781 European ancestry cases, 3,992 European ancestry controls	NA	5p15.33	TERT	rs2736100-?	NR	7E-9				Illumina [489781]	N
594	chr5	1286515	1286516	rs2736100	21725308	Hu Z	2011-07-03	Nat Genet	A genome-wide association study identifies two new lung cancer susceptibility loci at 13q12.12 and 22q12.2 in Han Chinese.	Lung cancer	2,331 Han Chinese ancestry cases, 3,077 Han Chinese ancestry controls	6,313 Han Chinese ancestry cases, 6,409 Han Chinese ancestry controls	5p15.33	TERT	rs2736100-C	0.41	1E-27		1.27	[1.22-1.33]	Affymetrix [906703]	N
594	chr5	1286515	1286516	rs2736100	21531791	Sanson M	2011-04-29	Hum Mol Genet	Chromosome 7p11.2 (EGFR) variation influences glioma risk.	Glioma	4,147 European ancestry cases, 7,435 European ancestry controls	NA	5p15.33	TERT	rs2736100-?	NR	1E-14		1.25	[NR]	Illumina [424460]	N
594	chr5	1286515	1286516	rs2736100	20871597	Miki D	2010-09-26	Nat Genet	Variation in TP63 is associated with lung adenocarcinoma susceptibility in Japanese and Korean populations.	Lung adenocarcinoma	1,004 Japanese ancestry cases, 1,900 Japanese ancestry controls	1,094 East Asian ancestry cases, 9,148 East Asian ancestry controls	5p15.33	TERT	rs2736100-C	0.39	3E-11		1.27	[1.19-1.37]	Illumina [432024]	N
594	chr5	1286515	1286516	rs2736100	20700438	Hsiung CA	2010-08-05	PLoS Genet	The 5p15.33 locus is associated with risk of lung adenocarcinoma in never-smoking females in Asia.	Lung adenocarcinoma	584 East Asian ancestry cases, 585 East Asian ancestry controls	2,184 East Asian ancestry cases, 2,515 East Asian ancestry controls	5p15.33	TERT, CLPTM1L	rs2736100-G	0.39	2E-22		1.46	[1.35-1.57]	Illumina [457504]	N
594	chr5	1286515	1286516	rs2736100	20543847	Turnbull C	2010-06-13	Nat Genet	Variants near DMRT1, TERT and ATF7IP are associated with testicular germ cell cancer.	Testicular germ cell cancer	979 European ancestry cases, 4,947 European ancestry controls	664 European ancestry cases, 3,456 European ancestry controls	5p15.33	TERT	rs2736100-T	0.49	8E-15		1.33	[1.18-1.50]	Illumina [298782]	N
594	chr5	1286515	1286516	rs2736100	20139978	Kamatani Y	2010-02-07	Nat Genet	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Red blood cell count	14,392 Japanese ancestry individuals	NA	5p15.33	TERT	rs2736100-G	0.4	3E-8		0.067	[0.043-0.091] unit increase	Illumina [561583]	N
594	chr5	1286515	1286516	rs2736100	19836008	Landi MT	2009-10-15	Am J Hum Genet	A genome-wide association study of lung cancer identifies a region of chromosome 5p15 associated with risk for adenocarcinoma.	Lung adenocarcinoma	5,739 European ancestry cases, 5,848 European ancestry controls	7,561 European ancestry cases, 13,818 European ancestry controls	5p15.33	TERT	rs2736100-G	0.50	2E-10		1.12	[1.08-1.16]	Illumina [515922]	N
594	chr5	1286515	1286516	rs2736100	19578367	Shete S	2009-07-05	Nat Genet	Genome-wide association study identifies five susceptibility loci for glioma.	Glioma	1,878 European ancestry cases, 3,670 European ancestry controls	2,545 European ancestry cases, 2,953 European ancestry controls	5p15.33	TERT	rs2736100-G	0.49	2E-17		1.27	[1.19-1.37]	Illumina [454576]	N
594	chr5	1286515	1286516	rs2736100	18835860	Mushiroda T	2008-10-01	J Med Genet	A genome-wide association study identifies an association of a common variant in TERT with susceptibility to idiopathic pulmonary fibrosis.	Idiopathic pulmonary fibrosis	159 Japanese ancestry cases, 934 Japanese ancestry controls	83 Japanese ancestry cases, 535 Japanese ancestry controls	5p15.33	TERT	rs2736100-A	0.41	3E-8		2.11	[1.61-2.78]	Illumina [214508]	N
594	chr5	1287193	1287194	rs2853677	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Skin cancer	25,928 European ancestry cases, 466,275 European ancestry controls, 154 East Asian ancestry cases, 178,572 East Asian ancestry controls	NA	5p15.33		rs2853677-A	NR	5E-24		0.0975	[0.079-0.116] unit decrease	Affymetrix, Illumina [25845421] (imputed)	N
594	chr5	1287193	1287194	rs2853677	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lung cancer	4,444 East Asian ancestry cases, 174,282 East Asian ancestry controls	NA	5p15.33		rs2853677-A	0.694522805	8E-25		0.24699317	[0.2-0.29] unit decrease	Illumina [13429980] (imputed)	N
594	chr5	1287193	1287194	rs2853677	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lung cancer	3,791 European ancestry cases, 489,012 European ancestry controls, 4,444 East Asian ancestry cases, 174,282 East Asian ancestry controls	NA	5p15.33		rs2853677-A	NR	3E-21		0.1597	[0.13-0.19] unit decrease	Affymetrix, Illumina [25845450] (imputed)	N
594	chr5	1287193	1287194	rs2853677	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Cancer	56,634 White British ancestry cases, 218,196 White British ancestry controls	NA	5p15.33		rs2853677-?	NR	4E-16		1.05781	[1.04-1.07]	NR [688737]	N
594	chr5	1287193	1287194	rs2853677	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	Intrinsic epigenetic age acceleration	34,461 European ancestry individuals, 6,148 African American individuals	NA	5p15.33	NR	rs2853677-?	NR	7E-15				Affymetrix, Illumina [6211246] (imputed)	N
594	chr5	1287193	1287194	rs2853677	33057200	Bao EL	2020-10-14	Nature	Inherited myeloproliferative neoplasm risk affects haematopoietic stem cells.	Myeloproliferative neoplasms	1,086 British ancestry cases, 407,155 British ancestry controls, 640 Finnish ancestry cases, 176,259 Finnish ancestry controls	NA	5p15.33	TERT	rs2853677-G	0.4176	3E-44		1.46	1.38-1.54	Affymetrix [6845584] (imputed)	N
594	chr5	1287193	1287194	rs2853677	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	5p15.33	TERT	rs2853677-A	0.57704	2E-12		0.016972704	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
594	chr5	1287193	1287194	rs2853677	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	5p15.33	TERT	rs2853677-A	0.577018	5E-16		0.0195952	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
594	chr5	1287193	1287194	rs2853677	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	5p15.33	TERT	rs2853677-A	0.577489	2E-45		0.034883548	[0.03-0.04] unit decrease	Affymetrix [93095623] (imputed)	N
594	chr5	1287193	1287194	rs2853677	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	5p15.33	TERT	rs2853677-A	0.577494	5E-25		0.02541881	[0.021-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
594	chr5	1287193	1287194	rs2853677	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	5p15.33	TERT	rs2853677-A	0.576972	8E-16		0.019479472	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
594	chr5	1287193	1287194	rs2853677	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	5p15.33	TERT	rs2853677-A	0.577033	8E-20		0.022092678	[0.017-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
594	chr5	1287193	1287194	rs2853677	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	5p15.33	TERT	rs2853677-A	0.576941	2E-24		0.024952577	[0.02-0.03] unit increase	Affymetrix [93095623] (imputed)	N
594	chr5	1287193	1287194	rs2853677	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	5p15.33	TERT	rs2853677-A	0.577027	8E-29		0.027465994	[0.023-0.032] unit increase	Affymetrix [93095623] (imputed)	N
594	chr5	1287193	1287194	rs2853677	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	5p15.33	TERT	rs2853677-A	0.577477	3E-13		0.01659047	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
594	chr5	1287193	1287194	rs2853677	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	5p15.33	TERT	rs2853677-A	0.57708	2E-34		0.039547	[0.035-0.044] unit increase	Affymetrix [93095623] (imputed)	N
594	chr5	1287193	1287194	rs2853677	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	5p15.33	TERT	rs2853677-A	0.577116	3E-35		0.029941104	[0.025-0.035] unit increase	Affymetrix [93095623] (imputed)	N
594	chr5	1287193	1287194	rs2853677	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	5p15.33	TERT	rs2853677-A	0.57696	5E-19		0.019951025	[0.016-0.024] unit increase	Affymetrix [93095623] (imputed)	N
594	chr5	1287193	1287194	rs2853677	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	5p15.33	TERT	rs2853677-A	0.577101	5E-14		0.018157152	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
594	chr5	1287193	1287194	rs2853677	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	5p15.33	TERT	rs2853677-A	0.577046	1E-12		0.015846886	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
594	chr5	1287193	1287194	rs2853677	32109421	Li C	2020-02-20	Am J Hum Genet	Genome-Wide Association Analysis in Humans Links Nucleotide Metabolism to Leukocyte Telomere Length.	Leukocyte telomere length	78,592 European ancestry individuals	NA	5p15.33	TERT	rs2853677-A	0.59	3E-31		0.064	[0.052-0.076] unit decrease	Affymetrix, Illumina, Perlegen [up to 30071938] (imputed)	N
594	chr5	1287193	1287194	rs2853677	31624269	Terao C	2019-10-17	Nat Commun	GWAS of mosaic loss of chromosome Y highlights genetic effects on blood cell differentiation.	Mosaic loss of chromosome Y (Y chromosome dosage)	95,380 Japanese men	NA	5p15.33	TERT	rs2853677-A	0.7	2E-9		0.027	NR unit increase	Illumina [9591901] (imputed)	N
594	chr5	1287193	1287194	rs2853677	31624269	Terao C	2019-10-17	Nat Commun	GWAS of mosaic loss of chromosome Y highlights genetic effects on blood cell differentiation.	Mosaic loss of chromosome Y (Y chromosome dosage)	205,011 men	NA	5p15.33	TERT	rs2853677-G	0.42	8E-6		0.005	unit increase	NR [NR]	N
594	chr5	1287193	1287194	rs2853677	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Keratinocyte cancer (MTAG)	at least 18,538 European ancestry cases, at least 340,302 European ancestry controls	NA	5p15.33	TERT	rs2853677-G	0.420839	3E-20		1.08	[1.06-1.10]	Affymetrix [7600000] (imputed)	N
594	chr5	1287193	1287194	rs2853677	30410027	Gudmundsson J	2018-11-08	Nat Commun	Genome-wide associations for benign prostatic hyperplasia reveal a genetic correlation with serum levels of PSA.	Prostate-specific antigen levels	33,572 Icelandic ancestry individuals	NA	5p15.33	TERT	rs2853677-G	0.421	9E-7		0.029	unit increase	Affymetrix, Illumina [up to 32463442] (imputed)	N
594	chr5	1287193	1287194	rs2853677	30410027	Gudmundsson J	2018-11-08	Nat Commun	Genome-wide associations for benign prostatic hyperplasia reveal a genetic correlation with serum levels of PSA.	Benign prostatic hyperplasia and lower urinary tract symptoms (prostate cancer excluded)	18,138 European ancestry cases, 277,213 European ancestry controls	NA	5p15.33		rs2853677-G	0.421	4E-20		1.12	[1.09-1.14]	Affymetrix, Illumina [42907111] (imputed)	N
594	chr5	1287193	1287194	rs2853677	30410027	Gudmundsson J	2018-11-08	Nat Commun	Genome-wide associations for benign prostatic hyperplasia reveal a genetic correlation with serum levels of PSA.	Benign prostatic hyperplasia and lower urinary tract symptoms	20,621 European ancestry cases, 280,541 European ancestry controls	NA	5p15.33	TERT	rs2853677-G	0.421	2E-22		1.12	[1.09-1.15]	Affymetrix, Illumina [42907111] (imputed)	N
594	chr5	1287193	1287194	rs2853677	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	5p15.33	TERT	rs2853677-A	0.5775	4E-35		0.04567411	[0.038-0.053] unit decrease	Affymetrix [~ 2500000] (imputed)	N
594	chr5	1287193	1287194	rs2853677	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	5p15.33	TERT	rs2853677-A	0.5773	8E-23		0.03507309	[0.028-0.042] unit increase	Affymetrix [~ 2500000] (imputed)	N
594	chr5	1287193	1287194	rs2853677	27393504	Zanetti KA	2016-05-13	Lung Cancer	Genome-wide association study confirms lung cancer susceptibility loci on chromosomes 5p15 and 15q25 in an African-American population.	Lung cancer	1,737 African American cases, 3,602 African American controls	866 African American cases, 796  African American controls	5p15.33	TERT	rs2853677-C	0.273	3E-9		1.2818	[1.1810-1.3911]	Illumina [1024001]	N
594	chr5	1287193	1287194	rs2853677	27393504	Zanetti KA	2016-05-13	Lung Cancer	Genome-wide association study confirms lung cancer susceptibility loci on chromosomes 5p15 and 15q25 in an African-American population.	Lung adenocarcinoma	739 African American cases, 3,601 African American controls	up to 311 African American cases, up to 1,137  African American controls	5p15.33	TERT	rs2853677-C	0.273	1E-8		1.37	[1.23-1.53]	Illumina [1024001]	N
594	chr5	1287193	1287194	rs2853677	22797724	Shiraishi K	2012-07-15	Nat Genet	A genome-wide association study identifies two new susceptibility loci for lung adenocarcinoma in the Japanese population.	Lung adenocarcinoma	1,695 Japanese ancestry cases, 5,333 Japanese ancestry controls	4,334 Japanese ancestry cases, 8,202 Japanese ancestry controls	5p15.33	TERT	rs2853677-C	0.30	3E-40		1.41	[1.32-1.50]	Illumina [538166]	N
594	chr5	1287339	1287340	rs2736099	31738745	Gibson J	2019-11-18	PLoS Genet	A meta-analysis of genome-wide association studies of epigenetic age acceleration.	Intrinsic epigenetic age acceleration	13,493 European ancestry individuals	NA	5p15.33	NR	rs2736099-A	0.3668	9E-10		0.3726	[0.25-0.49] unit increase	Illumina [5932107] (imputed)	N
594	chr5	1287339	1287340	rs2736099	29374233	Lu AT	2018-01-26	Nat Commun	GWAS of epigenetic aging rates in blood reveals a critical role for TERT.	Intrinsic epigenetic age acceleration	8,393 European ancestry individuals	1,023 African American individuals, 491 Hispanic individuals	5p15.33	TERT	rs2736099-A	0.36	1E-12		0.631	[0.46-0.81] unit increase	Affymetrix, Illumina [~ 7400000] (imputed)	N
594	chr5	1288546	1288547	rs2853676	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	5p15.33	NR	rs2853676-C	NR	2E-11		0.0187	[0.013-0.024] unit increase	Affymetrix [9000000] (imputed)	N
594	chr5	1288546	1288547	rs2853676	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	5p15.33	NR	rs2853676-C	NR	3E-21		0.0264	[0.021-0.032] unit increase	Affymetrix [9000000] (imputed)	N
594	chr5	1288546	1288547	rs2853676	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	5p15.33		rs2853676-T	0.2671	5E-11		0.1702883	[0.12-0.22] mmHg increase	Affymetrix, Illumina [242865] (imputed)	N
594	chr5	1288546	1288547	rs2853676	31649266	Gallagher CS	2019-10-24	Nat Commun	Genome-wide association and epidemiological analyses reveal common genetic origins between uterine leiomyomata and endometriosis.	Uterine fibroids	20,406 European ancestry cases, 223,918 European ancestry controls	15,068 European ancestry cases, 43,587 European ancestry controls	5p15.33		rs2853676-T	0.2705	8E-14		0.0681	[0.05-0.086] unit increase	Affymetrix, Illumina [8662096] (imputed)	N
594	chr5	1288546	1288547	rs2853676	19578367	Shete S	2009-07-05	Nat Genet	Genome-wide association study identifies five susceptibility loci for glioma.	Glioma	1,878 European ancestry cases, 3,670 European ancestry controls	2,545 European ancestry cases, 2,953 European ancestry controls	5p15.33	TERT	rs2853676-A	0.73	4E-14		1.26	[1.20-1.32]	Illumina [454576]	N
594	chr5	1292117	1292118	rs71595003	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	5p15.33	NR	rs71595003-A	NR	3E-14		1.188	[1.14-1.24]	Affymetrix, Illumina [29235255] (imputed)	N
594	chr5	1292982	1292983	rs2853672	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Colorectal cancer	6,581 European ancestry cases, 463,421 European ancestry controls, 8,305 East Asian ancestry cases, 159,386 East Asian ancestry controls	NA	5p15.33		rs2853672-A	NR	5E-12		0.0865	[0.062-0.111] unit increase	Affymetrix, Illumina [25843452] (imputed)	N
594	chr5	1292982	1292983	rs2853672	33385171	Hagg S	2020-12-31	Hum Genet	Deciphering the genetic and epidemiological landscape of mitochondrial DNA abundance.	Mitochondrial DNA levels	295,150 European ancestry individuals	NA	5p15.33	NR	rs2853672-A	0.4871	7E-12		0.0177584	[0.013-0.023] unit decrease	Affymetrix [3505788] (imputed)	N
594	chr5	1294085	1294086	rs2736098	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Breast cancer	17,389 European ancestry cases, 240,341 European ancestry controls, 6,325 East Asian ancestry cases, 73,225 East Asian ancestry controls	NA	5p15.33		rs2736098-T	NR	3E-8		0.0632	[0.041-0.086] unit decrease	Affymetrix, Illumina [25794640] (imputed)	N
594	chr5	1294085	1294086	rs2736098	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 91,972 European ancestry controls	6,852 European ancestry cases, 193,117 European ancestry controls	5p15.33	NR	rs2736098-T	0.280110751	9E-8		1.1079248	[1.07-1.15]	Affymetrix, Illumina [20400945] (imputed)	N
594	chr5	1294085	1294086	rs2736098	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	5p15.33	NR	rs2736098-T	NR	3E-18		1.072	[1.06-1.09]	Affymetrix, Illumina [29235255] (imputed)	N
594	chr5	1294085	1294086	rs2736098	29422604	Klein AP	2018-02-08	Nat Commun	Genome-wide meta-analysis identifies five new susceptibility loci for pancreatic cancer.	Pancreatic cancer	9,040 European ancestry cases, 12,496 European ancestry controls	up to 2,737 cases, up to 4,752 controls	5p15.33	TERT	rs2736098-C	0.73	7E-15		1.1904762	[1.14-1.27]	Illumina [11381182] (imputed)	N
594	chr5	1294085	1294086	rs2736098	25086665	Wolpin BM	2014-08-03	Nat Genet	Genome-wide association study identifies multiple susceptibility loci for pancreatic cancer.	Pancreatic cancer	1,582 European ancestry cases, 5,203 European ancestry controls	6,101 European ancestry cases, 9,194 European ancestry controls	5p15.33	ZDHHC11, BRD9, TRIP13, LOC100506688, NKD2, SLC12A7, MIR4635, SLC6A19, SLC6A18, MIR4457, TERT, SLC6A3, LPCAT1, CLPTM1L, SDHAP3, LOC728613, MIR4277	rs2736098-C	0.716	1E-13		1.25	[1.18-1.32]	Illumina [608202]	N
594	chr5	1295348	1295349	rs2853669	33002439	Jin G	2020-10-01	Lancet Oncol	Genetic risk, incident gastric cancer, and healthy lifestyle: a meta-analysis of genome-wide association studies and prospective cohort study.	Gastric cancer	10,254 Han Chinese ancestry cases, 10,914 Han Chinese ancestry controls	NA	5p15.33	NR	rs2853669-A	0.63	3E-6		1.12	NR	Affymetrix, Illumina [6957974] (imputed)	N
594	chr5	1295348	1295349	rs2853669	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	5p15.33	NR	rs2853669-G	0.3061	4E-21	(EA)	0.0651	[0.052-0.079] unit decrease	Illumina [~ 11800000] (imputed)	N
594	chr5	1295372	1295373	rs35226131	29422604	Klein AP	2018-02-08	Nat Commun	Genome-wide meta-analysis identifies five new susceptibility loci for pancreatic cancer.	Pancreatic cancer	9,040 European ancestry cases, 12,496 European ancestry controls	up to 2,737 cases, up to 4,752 controls	5p15.33	TERT, CLPTM1L	rs35226131-C	0.97	2E-8	(EA)	1.4925373	[1.23-1.89]	Illumina [11381182] (imputed)	N
594	chr5	1295372	1295373	rs35226131	27579533	Zhang M	2016-08-01	Oncotarget	Three new pancreatic cancer susceptibility signals identified on chromosomes 1q32.1, 5p15.33 and 8q24.21.	Pancreatic cancer	5,107 European ancestry cases, 8,845 European ancestry controls	6,076 cases, 7,555 controls	5p15.33	CLPTM1L, TERT	rs35226131-C	0.959	2E-8		1.4084507	[1.25-1.59]	Illumina [9132527] (imputed)	N
594	chr5	1296255	1296255	rs3215401	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	5p15.33		rs3215401-A	NR	3E-23		1.07	[1.05-1.08]	Affymetrix, Illumina [NR] (imputed)	N
594	chr5	1296255	1296255	rs3215401	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	5p15.33	TERT	rs3215401-A	0.69	1E-20	(EA)	1.0752687	[1.05-1.1] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
594	chr5	1296255	1296255	rs3215401	29058716	Milne RL	2017-10-23	Nat Genet	Identification of ten variants associated with risk of estrogen-receptor-negative breast cancer.	Breast cancer (estrogen-receptor negative)	14,135 European ancestry cases, 58,126 European ancestry controls	7,333 European ancestry cases, 42,468 European ancestry controls	5p15.33	NR	rs3215401-A	0.69	6E-21		1.1363636	[1.1-1.18] (Oncoarray)	Illumina [~ 11500000] (imputed)	N
594	chr5	1296255	1296255	rs3215401	29058716	Milne RL	2017-10-23	Nat Genet	Identification of ten variants associated with risk of estrogen-receptor-negative breast cancer.	Breast Cancer in BRCA1 mutation carriers	7,784 European ancestry carrier cases, 7,782 European ancestry carrier controls	1,630 European ancestry carrier cases, 1,712 European ancestry carrier controls	5p15.33	NR	rs3215401-A	0.69	3E-7		1.1111112	[1.06-1.15]	Illumina [~ 11500000] (imputed)	N
594	chr5	1296485	1296486	rs2735940	31826910	Lu Y	2019-12-11	Cancer Epidemiol Biomarkers Prev	Identification of novel loci and new risk variant in known loci for colorectal cancer risk in East Asians.	Colorectal cancer	23,572 East Asian ancestry cases, 48,700 East Asian ancestry controls	58,131 European ancestry cases, 67,347 European ancestry controls	5p15.33	TERT	rs2735940-G	NR	2E-6	(East Asian)	1.07	[1.04-1.10]	Affymetrix, Illumina [up to 47000000] (imputed)	N
594	chr5	1296485	1296486	rs2735940	31089142	Law PJ	2019-05-14	Nat Commun	Association analyses identify 31 new risk loci for colorectal cancer susceptibility.	Colorectal cancer	31,197 European ancestry cases, 61,770 European ancestry controls	NA	5p15.33	NR	rs2735940-A	NR	1E-11		1.08	[1.06-1.10]	Affymetrix, Illumina [> 10000000] (imputed)	N
594	chr5	1296485	1296486	rs2735940	30529582	Lu Y	2018-12-06	Gastroenterology	Large-scale Genome-wide Association Study of East Asians Identifies Loci Associated With Risk for Colorectal Cancer.	Colorectal cancer	22,775 East Asian ancestry cases, 47,731 East Asian ancestry controls	NA	5p15.33	TERT	rs2735940-G	0.61	6E-6		1.07	[1.04-1.10]	Affymetrix, Illumina [up to 10700000] (imputed)	N
594	chr5	1296485	1296486	rs2735940	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	5p15.33	TERT, CLPTM1L	rs2735940-G	0.4952	5E-25		1.09	[1.08-1.11]	Affymetrix, Illumina [16900397] (imputed)	N
594	chr5	1296485	1296486	rs2735940	29917119	Schmit SL	2018-06-16	J Natl Cancer Inst	Novel Common Genetic Susceptibility Loci for Colorectal Cancer.	Colorectal cancer	36,948 European ancestry cases, 30,864 European ancestry controls	12,952 European ancestry cases, 48,383 European ancestry controls, 8,580 East Asian ancestry cases, 13,050 East Asian ancestry controls, 1,611 Hispanic cases, 4,330 Hispanic controls, 1,894 African American cases, 4,703 African American controls	5p15.33	NR	rs2735940-G	0.489	3E-13	(EA)	1.0869565	[1.06-1.12]	Affymetrix, Illumina [12931465] (imputed)	N
594	chr5	1296758	1296759	rs2736109	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Breast cancer	17,881 European ancestry cases, 410,350 European ancestry controls	NA	5p15.33		rs2736109-C	NR	2E-8		1.0744	NR	Affymetrix [7846216] (imputed)	N
594	chr5	1297487	1297488	rs2736108	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Breast cancer	10,682 White British ancestry cases, 138,504 White British ancestry controls	NA	5p15.33		rs2736108-?	NR	1E-6		0.926523	[0.9-0.96]	NR [682398]	N
594	chr5	1297487	1297488	rs2736108	27117709	Couch FJ	2016-04-27	Nat Commun	Identification of four novel susceptibility loci for oestrogen receptor negative breast cancer.	Breast cancer (estrogen-receptor negative)	4,939 European ancestry cases, 14,352 European ancestry controls	7,333 European ancestry cases, 42,468 European ancestry controls	5p15.33	TERT	rs2736108-?	0.71	1E-8		1.1235955	[1.08-1.16]	Illumina [10909381] (imputed)	N
594	chr5	1297487	1297488	rs2736108	27117709	Couch FJ	2016-04-27	Nat Commun	Identification of four novel susceptibility loci for oestrogen receptor negative breast cancer.	Breast cancer	4,939 European ancestry estrogen receptor-negative cases, 14,352 European ancestry controls	7,333 European ancestry estrogen receptor-negative cases, 7,797 European ancestry BRCA1 mutation carrier cases, 7,455  European ancestry BRCA1 mutation carrier controls, 42,468 European ancestry controls	5p15.33	TERT	rs2736108-?	0.71	3E-14		1.1235955	[1.08-1.16] (BRCA1 carriers)	Illumina [10909381] (imputed)	N
594	chr5	1297487	1297488	rs2736108	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	15,748 European ancestry cases, 18,084 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls	5p15.33	NR	rs2736108-C	0.71	2E-9		1.0638298	[1.04-1.09]	Affymetrix, Illumina [~ 11600000] (imputed)	N
594	chr5	1298016	1298017	rs148297846	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	5p15.33		rs148297846-A	NR	2E-8		1.1560693	[1.1-1.22]	Affymetrix [7846216] (imputed)	N
594	chr5	1299212	1299213	rs2735948	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Pancreatic cancer	663 European ancestry cases, 410,350 European ancestry controls	NA	5p15.33		rs2735948-A	NR	2E-8		1.4475	NR	Affymetrix [7846216] (imputed)	N
594	chr5	1300024	1300025	rs2853668	26545403	Bei JX	2016-01-01	Cancer Epidemiol Biomarkers Prev	A GWAS Meta-analysis and Replication Study Identifies a Novel Locus within CLPTM1L/TERT Associated with Nasopharyngeal Carcinoma in Individuals of Chinese Ancestry.	Nasopharyngeal carcinoma	2,152 Chinese ancestry cases, 3,740 Chinese ancestry controls	4,716 Chinese ancestry cases, 5,379 Chinese ancestry controls	5p15.33	CLPTM1L, TERT	rs2853668-?	NR	4E-6		1.12		Illumina [Sequenom custom array used in replication] (imputed)	N
594	chr5	1300069	1300070	rs2853667	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous malignant melanoma	36,760 European ancestry cases, 375,188 European ancestry controls	NA	5p15.33	TERT	rs2853667-A	0.5691	8E-9		1.0623	NR	Affymetrix, Illumina [NR] (imputed)	N
594	chr5	1300400	1300401	rs2736103	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Bladder cancer	2,242 European ancestry cases, 410,350 European ancestry controls	NA	5p15.33		rs2736103-C	NR	3E-7		1.2052549	NR	Affymetrix [7846216] (imputed)	N
594	chr5	1302113	1302113	rs34218850	31577861	Dai J	2019-10-31	Int J Cancer	Genome-wide association study of INDELs identified four novel susceptibility loci associated with lung cancer risk.	Lung cancer	20,871 European ancestry cases, 15,971 European ancestry controls, 2,331 Chinese ancestry cases, 3,077 Chinese ancestry controls	NA	5p15.33	TERT	rs34218850-D	0.34	8E-18		1.14	[1.11-1.18]	Illumina [484196]	N
594	chr5	1304431	1304432	rs2735944	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)(bidirectional)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	5p15.33		rs2735944-C	NR	3E-7				Affymetrix [7846216] (imputed)	N
594	chr5	1308551	1308552	rs4635969	28604732	Wang Z	2017-06-12	Nat Genet	Meta-analysis of five genome-wide association studies identifies multiple new loci associated with testicular germ cell tumor.	Testicular germ cell tumor	3,558 European ancestry cases, 13,970 European ancestry controls	NA	5p15.33	CLPTM1L	rs4635969-A	0.2	3E-27		1.46	1.37-1.57	Illumina [9210350] (imputed)	N
594	chr5	1308551	1308552	rs4635969	23666240	Ruark E	2013-05-12	Nat Genet	Identification of nine new susceptibility loci for testicular cancer, including variants near DAZL and PRDM14.	Testicular germ cell tumor	986 European ancestry cases, 4,946 European ancestry controls	1,064 European ancestry cases, 10,082 European ancestry controls	5p15.33	TERT, CLPTM1L	rs4635969-T	0.2	5E-24		1.39	[1.25-1.54]	Illumina [307291]	N
594	chr5	1308551	1308552	rs4635969	20543847	Turnbull C	2010-06-13	Nat Genet	Variants near DMRT1, TERT and ATF7IP are associated with testicular germ cell cancer.	Testicular germ cell cancer	979 European ancestry cases, 4,947 European ancestry controls	664 European ancestry cases, 3,456 European ancestry controls	5p15.33	TERT, CLPTM1L	rs4635969-T	0.19	1E-23		1.54	[1.33-1.79]	Illumina [298782]	N
595	chr5	1313241	1313242	rs36115365	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	5p15.33	NR	rs36115365-C	0.205518	2E-11		0.016468	[0.012-0.021] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
595	chr5	1313241	1313242	rs36115365	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Testicular cancer	713 European ancestry cases, 359,825 European ancestry controls	NA	5p15.33		rs36115365-C	NR	2E-13		1.5412048	NR	Affymetrix [7846216] (imputed)	N
595	chr5	1313241	1313242	rs36115365	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	5p15.33		rs36115365-?	NR	2E-11				NR [~ 8900000] (imputed)	N
595	chr5	1313543	1313544	rs141834468	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	5p15.33	CLPTM1L	rs141834468-T	0.0159008375193879	9E-7	(G_Coprococcus_HB)	1.19768	[0.72-1.67] unit decrease	Illumina [7711310] (imputed)	N
595	chr5	1315659	1315660	rs4975616	19654303	Broderick P	2009-08-04	Cancer Res	Deciphering the impact of common genetic variation on lung cancer risk: a genome-wide association study.	Lung cancer	1,952 European ancestry cases, 1,438 European ancestry controls	2,465 European ancestry cases, 3,005 European ancestry controls, 3,143 individuals, 3,762 individuals	5p15.33	CLPTM1L	rs4975616-?	NR	3E-9		1.15	[1.10-1.20]	Illumina [511919]	N
595	chr5	1320135	1320136	rs421629	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in ever smokers	23,223 European ancestry cases,  16,964 European ancestry controls	NA	5p15.33	CLPTM1L	rs421629-G	0.581002122	3E-17		1.134976	[1.1-1.17]	Illumina [10439017] (imputed)	N
595	chr5	1320246	1320247	rs380286	33549134	Adolphe C	2021-02-06	Genome Med	Genetic and functional interaction network analysis reveals global enrichment of regulatory T cell genes influencing basal cell carcinoma susceptibility.	Basal cell carcinoma	17,416 European ancestry cases, 375,455 European ancestry controls	NA	5p15.33	CLPTM1L	rs380286-A	0.436629	8E-48		0.16071156	[0.14-0.18] unit decrease	Affymetrix [7260263] (imputed)	N
595	chr5	1320246	1320247	rs380286	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous melanoma or hair colour	36,760 European ancestry cutaneous melanoma cases, 375,188 European ancestry controls, 352,662 European ancestry individuals	NA	5p15.33	CLPTM1L	rs380286-G	0.553372	5E-24				Affymetrix, Illumina [NR] (imputed)	N
595	chr5	1320246	1320247	rs380286	31009812	Hung RJ	2019-04-19	J Thorac Oncol	Lung Cancer Risk in Never Smokers of European Descent is Associated with Genetic Variation in the 5P15.33 TERT-CLPTM1L Region.	Lung cancer in never smokers	2,676 European ancestry cases, 5,355 European ancestry controls	960 European ancestry cases, 940 European ancestry controls	5p15.33	CLPTM1L, TERT	rs380286-A	0.5831	4E-16		1.2987013	[1.22-1.38]	Illumina [at least 517482] (imputed)	N
595	chr5	1320246	1320247	rs380286	31009812	Hung RJ	2019-04-19	J Thorac Oncol	Lung Cancer Risk in Never Smokers of European Descent is Associated with Genetic Variation in the 5P15.33 TERT-CLPTM1L Region.	Adenocarcinoma in never smokers	1,837 European ancestry cases, 5,355 European ancestry controls	672 European ancestry cases, 940 European ancestry controls	5p15.33	CLPTM1L	rs380286-A	0.61	2E-14		1.3280213	[1.23-1.43]	Illumina [at least 517482] (imputed)	N
595	chr5	1320246	1320247	rs380286	30429480	Duffy DL	2018-11-14	Nat Commun	Novel pleiotropic risk loci for melanoma and nevus density implicate multiple biological pathways.	Nevus count or cutaneous melanoma	52,506 European ancestry individuals, 12,874 European ancestry cases, 23,203 European ancestry controls	NA	5p15.33	TERT	rs380286-?	NR	3E-14				Affymetrix, Illumina [7850345] (imputed)	N
595	chr5	1320246	1320247	rs380286	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	5p15.33	CLPTM1L	rs380286-G	0.577369055	2E-32		1.1517557	[1.13-1.18]	Illumina [10439017] (imputed)	N
595	chr5	1320721	1320722	rs402710	18978790	McKay JD	2008-11-02	Nat Genet	Lung cancer susceptibility locus at 5p15.33.	Lung cancer	2,971 European ancestry cases, 3,746 European ancestry controls	2,899 European ancestry cases, 5,573 European ancestry controls	5p15.33	TERT, CLPTM1L	rs402710-C	NR	4E-6		1.18	[1.12-1.24]	Illumina [315194]	N
595	chr5	1322086	1322087	rs401681	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	5p15.33		rs401681-?	NR	7E-32		0.878963	[0.86-0.9]	NR [685523]	N
595	chr5	1322086	1322087	rs401681	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Melanoma	3,122 White British ancestry cases, 271,708 White British ancestry controls	NA	5p15.33		rs401681-?	NR	7E-16		1.22868	[1.18-1.28]	NR [674885]	N
595	chr5	1322086	1322087	rs401681	31326317	Dai J	2019-07-17	Lancet Respir Med	Identification of risk loci and a polygenic risk score for lung cancer: a large-scale prospective cohort study in Chinese populations.	Non-small cell lung cancer	13,327 Chinese ancestry cases, 13,793 European ancestry cases, 13,328 Chinese ancestry controls, 14,027 European ancestry controls	NA	5p15.33	NR	rs401681-C	0.68	8E-12	(East Asian)	1.16	[1.11-1.2]	Illumina [~ 11000000] (imputed)	N
595	chr5	1322086	1322087	rs401681	31326317	Dai J	2019-07-17	Lancet Respir Med	Identification of risk loci and a polygenic risk score for lung cancer: a large-scale prospective cohort study in Chinese populations.	Lung adenocarcinoma	8,762 Chinese ancestry cases, 6,819 European ancestry cases, 13,328 Chinese ancestry controls, 14,027 European ancestry controls	NA	5p15.33	NR	rs401681-C	0.68	3E-10	(East Asian)	1.16	[1.11-1.21]	Illumina [~ 11000000] (imputed)	N
595	chr5	1322086	1322087	rs401681	29422604	Klein AP	2018-02-08	Nat Commun	Genome-wide meta-analysis identifies five new susceptibility loci for pancreatic cancer.	Pancreatic cancer	9,040 European ancestry cases, 12,496 European ancestry controls	up to 2,737 cases, up to 4,752 controls	5p15.33	CLPTM1L	rs401681-T	0.44	9E-17	(EA)	1.19	[1.15-1.23]	Illumina [11381182] (imputed)	N
595	chr5	1322086	1322087	rs401681	27436580	Cui Q	2016-07-19	Hum Mol Genet	An extended genome-wide association study identifies novel susceptibility loci for nasopharyngeal carcinoma.	Nasopharyngeal carcinoma	1,583 Southern Chinese ancestry cases, 2,979 Southern Chinese ancestry controls	5,463 Southern Chinese ancestry cases, 5,591 Southern Chinese ancestry controls	5p15.33	TERT, CLPTM1L	rs401681-?	0.67	3E-14		1.22	[1.15-1.28]	Illumina [463250]	N
595	chr5	1322086	1322087	rs401681	26098869	Childs EJ	2015-06-22	Nat Genet	Common variation at 2p13.3, 3q29, 7p13 and 17q25.1 associated with susceptibility to pancreatic cancer.	Pancreatic cancer	7,638 cases, 7,364 controls	2,287 cases, 4,205 controls	5p15.33	CLPTM1L	rs401681-?	NR	3E-8		1.2	[1.13-1.28]	Illumina [866891] (imputed)	N
595	chr5	1322086	1322087	rs401681	25855136	Stacey SN	2015-04-09	Nat Commun	New basal cell carcinoma susceptibility loci.	Basal cell carcinoma	4,572 European ancestry cases, 266,358 European ancestry controls	up to 956 European ancestry cases, up to 4,214 European ancestry controls, 526 cases, 528 controls	5p15.33	TERT	rs401681-C	0.546	9E-13		1.21	[NR]	Illumina [24988228] (imputed)	N
595	chr5	1322086	1322087	rs401681	24403052	Stacey SN	2014-01-08	Hum Mol Genet	Germline sequence variants in TGM3 and RGS22 confer risk of basal cell carcinoma.	Basal cell carcinoma	4,208 European ancestry cases, 109,408 European ancestry controls	up to 1,480 European ancestry cases, up to 4,610 European ancestry controls	5p15.33	TERT	rs401681-C		2E-12		1.23	[1.16-1.30]	Illumina [38500000] (imputed)	N
595	chr5	1322086	1322087	rs401681	24163127	Figueroa JD	2013-10-24	Hum Mol Genet	Genome-wide association study identifies multiple loci associated with bladder cancer risk.	Bladder cancer	up to 2,305 European ancestry cases, up to 3,901 European ancestry controls	up to 13,298 cases, up to 54,535 controls	5p15.33	TERT, CLPTML	rs401681-C	0.54	4E-11		1.12	[1.08-1.16]	Illumina [462190]	N
595	chr5	1322086	1322087	rs401681	21983787	Barrett JH	2011-10-09	Nat Genet	Genome-wide association study identifies three new melanoma susceptibility loci.	Melanoma	2,804 European ancestry cases, 7,618 European ancestry controls	5,551 European ancestry cases, 7,449 European ancestry controls	5p15.33	TERT, CLPTM1L	rs401681-A	0.46	3E-8		1.2	[1.12-1.28]	Illumina [594997]	N
595	chr5	1322086	1322087	rs401681	21160077	Gudmundsson J	2010-12-15	Sci Transl Med	Genetic correction of PSA values using sequence variants associated with PSA levels.	Serum prostate-specific antigen levels	7,538 European ancestry individuals	2,373 European ancestry individuals	5p15.33	TERT	rs401681-C	0.55	1E-10		7.0	[NR] % increase	Illumina [304070]	N
595	chr5	1322086	1322087	rs401681	20972438	Rothman N	2010-10-24	Nat Genet	A multi-stage genome-wide association study of bladder cancer identifies multiple susceptibility loci.	Bladder cancer	3,532 European ancestry cases, 5,120 European ancestry controls	8,381 cases, 48,275 controls	5p15.33	TERT, CLPTM1L	rs401681-C	0.54	5E-7		1.11	[1.07-1.16]	Illumina [589299]	N
595	chr5	1322086	1322087	rs401681	20101243	Petersen GM	2010-01-24	Nat Genet	A genome-wide association study identifies pancreatic cancer susceptibility loci on chromosomes 13q22.1, 1q32.1 and 5p15.33.	Pancreatic cancer	3,851 European, Chinese and other ancestry cases, 3,934 European, Chinese and other ancestry controls	NA	5p15.33	CLPTM1L	rs401681-T	0.45	7E-7		1.19	[1.11-1.27]	Illumina [551766]	N
595	chr5	1322086	1322087	rs401681	19151717	Rafnar T	2009-01-18	Nat Genet	Sequence variants at the TERT-CLPTM1L locus associate with many cancer types.	Basal cell carcinoma	1,505 European ancestry cases, 28,890 European ancestry controls	1,060 European ancestry cases, 515 European ancestry controls	5p15.33	TERT, CLPTM1L	rs401681-C	0.56	4E-12		1.25	[1.18-1.34]	Illumina [302140]	N
595	chr5	1322086	1322087	rs401681	18978787	Wang Y	2008-11-02	Nat Genet	Common 5p15.33 and 6p21.33 variants influence lung cancer risk.	Lung cancer	5,095 European ancestry cases, 5,200 European ancestry controls	2,448 European ancestry cases, 2,983 European ancestry controls	5p15.33	CLPTM1L	rs401681-G	NR	8E-9		1.15	[1.09-1.19]	Illumina [223891]	N
595	chr5	1322467	1322468	rs381949	30410027	Gudmundsson J	2018-11-08	Nat Commun	Genome-wide associations for benign prostatic hyperplasia reveal a genetic correlation with serum levels of PSA.	Prostate-specific antigen levels	33,572 Icelandic ancestry individuals	NA	5p15.33	CLPTM1L	rs381949-A	0.415	5E-11		0.038	unit decrease	Affymetrix, Illumina [up to 32463442] (imputed)	N
595	chr5	1322467	1322468	rs381949	30410027	Gudmundsson J	2018-11-08	Nat Commun	Genome-wide associations for benign prostatic hyperplasia reveal a genetic correlation with serum levels of PSA.	Benign prostatic hyperplasia and lower urinary tract symptoms (prostate cancer excluded)	18,138 European ancestry cases, 277,213 European ancestry controls	NA	5p15.33		rs381949-G	0.585	6E-25		1.1363636	[1.11-1.16]	Affymetrix, Illumina [42907111] (imputed)	N
595	chr5	1322467	1322468	rs381949	30410027	Gudmundsson J	2018-11-08	Nat Commun	Genome-wide associations for benign prostatic hyperplasia reveal a genetic correlation with serum levels of PSA.	Benign prostatic hyperplasia and lower urinary tract symptoms	20,621 European ancestry cases, 280,541 European ancestry controls	NA	5p15.33	CLPTM1L	rs381949-G	0.415	2E-28		1.1363636	[1.11-1.16]	Affymetrix, Illumina [42907111] (imputed)	N
595	chr5	1323211	1323212	rs13178866	34724200	Marley AR	2021-11-01	Int J Cancer	Citrus-Gene interaction and melanoma risk in the UK Biobank.	Melanoma x citrus consumption interaction (2df)	1,563 European ancestry cases, 193,296 European ancestry controls	NA	5p15.33		rs13178866-?	0.43	1E-6				Affymetrix [9981017] (imputed)	N
595	chr5	1323211	1323212	rs13178866	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous malignant melanoma	36,760 European ancestry cases, 375,188 European ancestry controls	NA	5p15.33	CLPTM1L	rs13178866-T	0.4462	1E-43		1.1424655	NR	Affymetrix, Illumina [NR] (imputed)	N
595	chr5	1323725	1323726	rs75630086	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	5p15.33		rs75630086-?	NR	2E-8				NR [~ 8900000] (imputed)	N
595	chr5	1325589	1325590	rs421284	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Keratinocyte cancer (MTAG)	at least 18,538 European ancestry cases, at least 340,302 European ancestry controls	NA	5p15.33	TERT, CLPTM1	rs421284-T	0.557319	6E-46		1.13	[1.11-1.15]	Affymetrix [7600000] (imputed)	N
595	chr5	1325589	1325590	rs421284	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Basal cell carcinoma	31,787 European ancestry cases, 619,351 European ancestry controls	NA	5p15.33	TERT, CLPTM1	rs421284-T	0.548799	8E-56		1.14	[1.13-1.16]	Affymetrix, Illumina [up to 9061544] (imputed)	N
595	chr5	1325589	1325590	rs421284	27539887	Chahal HS	2016-08-19	Nat Commun	Genome-wide association study identifies 14 novel risk alleles associated with basal cell carcinoma.	Basal cell carcinoma	12.945 European ancestry cases, 274,252 European ancestry controls	4,242 European ancestry cases, 12,802 European ancestry controls	5p15.33	CLPTM1L	rs421284-T	0.56	1E-18		1.11	[NR]	Illumina [at least 560000] (imputed)	N
595	chr5	1325802	1325803	rs465498	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Squamous cell lung carcinoma	8,350 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	5p15.33	NR	rs465498-A	NR	6E-18		1.21	[1.16-1.26]	NR [NR] (imputed)	N
595	chr5	1330252	1330253	rs452932	28781888	Mobuchon L	2017-03-10	NPJ Genom Med	A GWAS in uveal melanoma identifies risk polymorphisms in the CLPTM1L locus.	Uveal melanoma	259 European ancestry cases, 401 European ancestry controls	276 French cases, 184 European ancestry controls	5p15.33	TERT, CLPTM1L	rs452932-C	0.4	2E-9		1.72	[1.44-2.06]	Illumina [866782]	N
595	chr5	1331218	1331219	rs370348	34424336	Mobuchon L	2021-08-23	J Natl Cancer Inst	Different Pigmentation Risk Loci for High-Risk Monosomy 3 and Low-Risk Disomy 3 Uveal Melanomas.	Uveal melanoma	1,142 European ancestry cases, 882 European ancestry controls	NA	5p15.33		rs370348-G	NR	1E-8		1.59	[1.35-1.86]	Illumina [7488175] (imputed)	N
595	chr5	1333076	1333077	rs2447853	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Nevus count or cutaneous melanoma	36,760 European ancestry cutaneous melanoma cases, 375,188 European ancestry controls, 12,930 European ancestry individuals, 52,847 individuals	NA	5p15.33	CLPTM1L	rs2447853-A	0.553126	5E-33				Affymetrix, Illumina [NR] (imputed)	N
595	chr5	1336220	1336221	rs467095	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	5p15.33	NR	rs467095-?	NR	2E-6		0.0572	[0.033-0.081] unit increase	Illumina [at least 560000] (imputed)	N
595	chr5	1336220	1336221	rs467095	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Squamous cell lung carcinoma	7,426 European ancestry cases, 55,627 European ancestry controls	NA	5p15.33	CLPTM1L	rs467095-T	0.573051438	7E-21		1.1958185	[1.15-1.24]	Illumina [10439017] (imputed)	N
595	chr5	1337105	1337106	rs459961	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	5p15.33	NR	rs459961-A	0.46	6E-19		0.88	[0.84-0.92]	Illumina [8468885] (imputed)	N
595	chr5	1339889	1339890	rs36019446	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Lung cancer	2,485 European ancestry cases, 410,350 European ancestry controls	NA	5p15.33		rs36019446-A	NR	1E-7		1.2015	NR	Affymetrix [7846216] (imputed)	N
595	chr5	1341100	1341101	rs31487	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Non-melanoma skin cancer	5,912 European ancestry cases, 181,740 European ancestry controls		5p15.33	CLPTM1L	rs31487-C	NR	2E-18		1.18	[1.14-1.23]	Affymetrix [5734850] (imputed)	N
595	chr5	1342713	1342714	rs31489	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Lung cancer	2,479 White British ancestry cases, 272,351 White British ancestry controls	NA	5p15.33		rs31489-?	NR	3E-8		0.847455	[0.79-0.91]	NR [673172]	N
595	chr5	1342713	1342714	rs31489	26545403	Bei JX	2016-01-01	Cancer Epidemiol Biomarkers Prev	A GWAS Meta-analysis and Replication Study Identifies a Novel Locus within CLPTM1L/TERT Associated with Nasopharyngeal Carcinoma in Individuals of Chinese Ancestry.	Nasopharyngeal carcinoma	2,152 Chinese ancestry cases, 3,740 Chinese ancestry controls	4,716 Chinese ancestry cases, 5,379 Chinese ancestry controls	5p15.33	CLPTM1L, TERT	rs31489-?	NR	6E-13		1.2345679		Illumina [Sequenom custom array used in replication] (imputed)	N
595	chr5	1342713	1342714	rs31489	19836008	Landi MT	2009-10-15	Am J Hum Genet	A genome-wide association study of lung cancer identifies a region of chromosome 5p15 associated with risk for adenocarcinoma.	Lung adenocarcinoma	5,739 European ancestry cases, 5,848 European ancestry controls	7,561 European ancestry cases, 13,818 European ancestry controls	5p15.33	CLPTM1L	rs31489-C	0.59	2E-10		1.12	[1.09-1.16]	Illumina [515922]	N
595	chr5	1343793	1343794	rs10462706	34642315	Ferreiro-Iglesias A	2021-10-12	Nat Commun	Germline determinants of humoral immune response to HPV-16 protect against oropharyngeal cancer.	Oropharynx cancer and human papilloma virus 16 negative oropharyngeal cancer	2,359 European ancestry cases, 565 European ancestry controls	NA	5p15.33		rs10462706-T	NR	5E-8		0.7593		Illumina [up to 7574753] (imputed)	N
595	chr5	1343793	1343794	rs10462706	32276964	Shete S	2020-04-10	Cancer Res	A genome-wide association study identifies two novel susceptible regions for squamous cell carcinoma of the head and neck.	Oral cavity cancer	631 European ancestry cases, 4,493 European ancestry controls	2,568 European ancestry cases, 3,232 European ancestry controls	5p15.33	CLPTM1L	rs10462706-C	0.84	8E-11		1.369863	[1.25-1.52]	Illumina [7858089] (imputed)	N
595	chr5	1343793	1343794	rs10462706	27749845	Lesseur C	2016-10-17	Nat Genet	Genome-wide association analyses identify new susceptibility loci for oral cavity and pharyngeal cancer.	Oral cavity cancer	2,717 European ancestry cases, 273 cases, 5,984 European ancestry controls, 601 controls	NA	5p15.33	CLPTM1L	rs10462706-C	0.85	6E-10		1.3594345	NR	Illumina [7574753] (imputed)	N
595	chr5	1344457	1344458	rs31490	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Melanoma	6,777 European ancestry cases, 410,350 European ancestry controls	NA	5p15.33		rs31490-A	NR	1E-13		1.176609	NR	Affymetrix [7846216] (imputed)	N
595	chr5	1344457	1344458	rs31490	25086665	Wolpin BM	2014-08-03	Nat Genet	Genome-wide association study identifies multiple susceptibility loci for pancreatic cancer.	Pancreatic cancer	1,582 European ancestry cases, 5,203 European ancestry controls	6,101 European ancestry cases, 9,194 European ancestry controls	5p15.33	CLPTM1L	rs31490-?	NR	2E-11		1.2	[1.14-1.27]	Illumina [608202]	N
595	chr5	1344457	1344458	rs31490	24292274	Speedy HE	2013-12-01	Nat Genet	A genome-wide association study identifies multiple susceptibility loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	1,739 European ancestry cases, 5,199 European ancestry controls	1,144 European ancestry cases, 3,151 European ancestry controls	5p15.33	CLPTM1L	rs31490-A		2E-7		1.18	[1.11-1.26]	Illumina [450000] (imputed)	N
595	chr5	1347127	1347128	rs27069	33794208	Bowden SJ	2021-04-01	Lancet Oncol	Genetic variation in cervical preinvasive and invasive disease: a genome-wide association study.	Cervical intraepithelial neoplasia grade 3 and invasive cervical cancer	764 European ancestry invasive cervical cancer cases, 4,005 European ancestry cervical intraepithelial neoplasia grade 3 cases, 145,545 European ancestry controls	NA	5p15.33	CLPTM1L	rs27069-?	NR	3E-9		0.88	[0.84-0.92]	Affymetrix [9600464] (imputed)	N
595	chr5	1356683	1356684	rs37004	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	5p15.33		rs37004-T	NR	8E-10		0.0123	[0.0084-0.0162] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
595	chr5	1356683	1356684	rs37004	28139693	Hoffmann TJ	2017-01-31	Nat Commun	Genome-wide association study of prostate-specific antigen levels identifies novel loci independent of prostate cancer.	Prostate-specific antigen levels	28,503 European ancestry individuals	2,716 Latino individuals, 2,518 East Asian ancestry individuals, 1,585 African American individuals, 6,193 European ancestry individuals (later diagnosed with prostate cancer), 5,603 European ancestry individuals	5p15.33	TERT, CLPTM1L	rs37004-C	0.79	9E-13		0.0604747	[0.044-0.077] unit increase	Affymetrix [10109774] (imputed)	N
595	chr5	1356943	1356944	rs37002	32839289	Milne S	2020-08-24	Thorax	Protective effect of club cell secretory protein (CC-16) on COPD risk and progression: a Mendelian randomisation study.	Serum CC16 levels	5,552 individuals	NA	5p15.33	intergenic	rs37002-C	0.52	3E-8		0.062	[0.04-0.084] unit increase	Illumina [7312348] (imputed)	N
595	chr5	1368996	1368997	rs461193	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	5p15.33	BC034612	rs461193-?	NR	1E-7		1.13	[1.08-1.18]	Illumina [at least 5000000] (imputed)	N
595	chr5	1412250	1412251	rs27047	34020725	Reddy JS	2021-05-21	Acta Neuropathol Commun	Genome-wide analysis identifies a novel LINC-PINT splice variant associated with vascular amyloid pathology in Alzheimer's disease.	Cerebral amyloid angiopathy x APOEe4 status interaction in Alzheimer's disease	534 European ancestry APOEe4 carriers, 287 European ancestry APOEe4 non-carriers	NA		SLC6A3	rs27047-C	0.24	5E-6				Illumina [1679420] (imputed)	N
595	chr5	1414513	1414514	rs140094229	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	5p15.33		rs140094229-T	NR	3E-6		2.7838	[1.65-3.92] unit increase	Illumina [NR] (imputed)	N
595	chr5	1419006	1419007	rs150052082	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	5p15.33	NR	rs150052082-T	NR	2E-6	(GEE model)	1.1459	[0.68-1.62] unit decrease	NR [NR] (imputed)	N
595	chr5	1428882	1428883	rs365663	30846698	Dashti HS	2019-03-07	Nat Commun	Genome-wide association study identifies genetic loci for self-reported habitual sleep duration supported by accelerometer-derived estimates.	Sleep duration	446,118 European ancestry individuals	47,180  adults, 10,554 children or adolescents	5p15.33	NR	rs365663-A	NR	3E-8		0.696	unit increase	Affymetrix [14661600] (imputed)	N
595	chr5	1428882	1428883	rs365663	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Sleep duration	384,317 European ancestry individuals	NA	5p15.33		rs365663-G	0.4551	1E-11		0.01672	[0.012-0.022] unit decrease	Affymetrix, Illumina [10862567] (imputed)	N
596	chr5	1443727	1443728	rs2937639	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5p15.33	AYTL2	rs2937639-?	NR	5E-6	(LPC 18:0)	0.1573376	[0.09-0.225] unit increase	Affymetrix [at least 2500000] (imputed)	N
596	chr5	1453343	1453344	rs2617583	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	5p15.33	NR	rs2617583-A	0.5554	9E-7	(EA)	0.0311	[0.019-0.043] unit decrease	Illumina [~ 11800000] (imputed)	N
596	chr5	1469436	1469437	rs27051	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	5p15.33		rs27051-G	NR	5E-9		0.0085	[0.0058-0.0112] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
596	chr5	1482866	1482867	rs12514642	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung adenocarcinoma	11,273 European ancestry cases,  55,483 European ancestry controls	NA	5p15.33	LPCAT1	rs12514642-C	0.169418679	6E-6		1.1133295	[1.062922485-1.166127143]	Illumina [10439017] (imputed)	N
596	chr5	1506846	1506847	rs6554860	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	5p15.33	NR	rs6554860-?	NR	3E-6		4.682	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
596	chr5	1510809	1510810	rs77053035	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Treponemataceae abundance in stool	5,959 Finnish ancestry individuals	NA	5p15.33		rs77053035-A	0.0137298	3E-8		0.0879163	[0.057-0.119] unit increase	Illumina [7980478] (imputed)	N
596	chr5	1519078	1519079	rs4406174	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in ever smokers	23,223 European ancestry cases,  16,964 European ancestry controls	NA	5p15.33	LPCAT1	rs4406174-C	0.8873339650000001	9E-6		1.1150825	[1.06-1.17]	Illumina [10439017] (imputed)	N
597	chr5	1619134	1619135	rs6897545	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung adenocarcinoma	11,273 European ancestry cases,  55,483 European ancestry controls	NA	5p15.33	LOC728613	rs6897545-G	0.778080348	1E-6		1.0992558	[1.06-1.14]	Illumina [10439017] (imputed)	N
597	chr5	1664198	1664199	rs555875634	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in diabetes mellitus	153 Korean ancestry cases, 5,161 Korean ancestry controls	NA	5p15.33		rs555875634-T	0.0105	9E-6		4.209	[2.235-7.92399999999999]	Affymetrix [7975321] (imputed)	N
597	chr5	1683342	1683343	rs10059595	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Unilateral cleft lip and palate	205 Asian ancestry cases, 315 European ancestry cases, 692 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	5p15.33	NR	rs10059595-?	NR	1E-5		0.53	[0.48-0.59]	Illumina [539000] (imputed)	N
597	chr5	1690195	1690196	rs190010418	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	5p15.33	NR	rs190010418-?	NR	3E-6		0.488	[0.29-0.69] unit increase	Illumina [at least 560000] (imputed)	N
598	chr5	1729787	1729788	rs147859879	30166627	Massey J	2018-08-31	Pharmacogenomics J	Genome-wide association study of response to tumour necrosis factor inhibitor therapy in rheumatoid arthritis.	Response to TNF inhibitor in rheumatoid arthritis (change in tender 28-joint count)	551 European ancestry individuals treated with adalimumab, 619 European ancestry individuals treated with etanercept, 434 European ancestry individuals treated with infliximab, 119 European ancestry individuals treated with other TNF inhibitors	NA	5p15.33	MIR4277, MRPL36	rs147859879-?		4E-9	(Adalimumab)	0.1	[-0.2332-0.4332] unit decrease	Affymetrix, Illumina [9814288] (imputed)	N
598	chr5	1791581	1791582	rs4975730	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	5p15.33	Intergenic	rs4975730-T	NR	5E-6		0.0536021	[0.031-0.077] unit increase	Illumina [13520550] (imputed)	N
598	chr5	1801425	1801426	rs13176353	32009195	Condreay LD	2020-02-03	Rheumatol Int	Pharmacogenetic investigation of efficacy response to mepolizumab in eosinophilic granulomatosis with polyangiitis.	Average oral glucocorticoid dose in mepolizumab-treated eosinophilic granulomatosis with polyangiitis	61 individuals	NA	5p15.33	NR	rs13176353-?	NR	6E-6		1.0022	[0.61-1.4] unit increase	Affymetrix [7154205] (imputed)	N
598	chr5	1812359	1812360	rs192773663	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in dyslipidemia	295 Korean ancestry cases, 20,474 Korean ancestry controls	NA	5p15.33		rs192773663-T	0.01687	1E-6		2.711	[1.81-4.06]	Affymetrix [7975321] (imputed)	N
599	chr5	1846791	1846792	rs72704488	30718321	Sanchez-Roige S	2019-02-04	J Neurosci	Genome-wide association studies of impulsive personality traits (BIS-11 and UPPSP) and drug experimentation in up to 22,861 adult research participants identify loci in the CACNA1I and CADM2 genes.	Lack of perseverance	22,861 European ancestry individuals	NA	5p15.33	NDUFS6, IRX4	rs72704488-T	0.0159	1E-7		0.23	[0.145-0.314] unit increase	Illumina [11914280] (imputed)	N
599	chr5	1877279	1877280	rs4975709	21779381	Schurks M	2011-07-14	PLoS One	Genetic determinants of cardiovascular events among women with migraine: a genome-wide association study.	Cardiovascular disease risk factors	5,122 European ancestry female migrain cases	NA	5p15.33	IRX4	rs4975709-?	NR	8E-7	(migraineurs with aura - ischemic stroke)	5.06	[2.66-9.62]	Illumina [339596]	N
599	chr5	1887199	1887200	rs260399	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5p15.33	IRX4	rs260399-G	0.668224	9E-9	(182 ms)	0.0344971	[0.023-0.046] unit decrease	Affymetrix [10000000] (imputed)	N
599	chr5	1887199	1887200	rs260399	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5p15.33	IRX4	rs260399-G	0.668224	8E-9	(186 ms)	0.0341534	[0.022-0.046] unit decrease	Affymetrix [10000000] (imputed)	N
599	chr5	1887199	1887200	rs260399	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5p15.33	IRX4	rs260399-G	0.668224	8E-9	(178 ms)	0.0337503	[0.022-0.045] unit decrease	Affymetrix [10000000] (imputed)	N
599	chr5	1887199	1887200	rs260399	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5p15.33	IRX4	rs260399-G	0.668224	5E-9	(194 ms)	0.0344279	[0.023-0.046] unit decrease	Affymetrix [10000000] (imputed)	N
599	chr5	1887199	1887200	rs260399	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5p15.33	IRX4	rs260399-G	0.668224	5E-9	(192 ms)	0.0345292	[0.023-0.046] unit decrease	Affymetrix [10000000] (imputed)	N
599	chr5	1887199	1887200	rs260399	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5p15.33	IRX4	rs260399-G	0.668224	5E-9	(180 ms)	0.0343248	[0.023-0.046] unit decrease	Affymetrix [10000000] (imputed)	N
599	chr5	1887199	1887200	rs260399	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5p15.33	IRX4	rs260399-G	0.668224	5E-8	(208 ms)	0.0324367	[0.021-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
599	chr5	1887199	1887200	rs260399	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5p15.33	IRX4	rs260399-G	0.668224	5E-8	(202 ms)	0.0323782	[0.021-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
599	chr5	1887199	1887200	rs260399	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5p15.33	IRX4	rs260399-G	0.668224	5E-8	(174 ms)	0.0331893	[0.021-0.045] unit decrease	Affymetrix [10000000] (imputed)	N
599	chr5	1887199	1887200	rs260399	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5p15.33	IRX4	rs260399-G	0.668224	5E-8	(162 ms)	0.0322472	[0.021-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
599	chr5	1887199	1887200	rs260399	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5p15.33	IRX4	rs260399-G	0.668224	4E-9	(196 ms)	0.0344577	[0.023-0.046] unit decrease	Affymetrix [10000000] (imputed)	N
599	chr5	1887199	1887200	rs260399	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5p15.33	IRX4	rs260399-G	0.668224	4E-9	(188 ms)	0.0347613	[0.023-0.047] unit decrease	Affymetrix [10000000] (imputed)	N
599	chr5	1887199	1887200	rs260399	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5p15.33	IRX4	rs260399-G	0.668224	4E-8	(216 ms)	0.0322836	[0.02-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
599	chr5	1887199	1887200	rs260399	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5p15.33	IRX4	rs260399-G	0.668224	4E-8	(212 ms)	0.0324598	[0.021-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
599	chr5	1887199	1887200	rs260399	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5p15.33	IRX4	rs260399-G	0.668224	4E-8	(204 ms)	0.0325575	[0.021-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
599	chr5	1887199	1887200	rs260399	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5p15.33	IRX4	rs260399-G	0.668224	4E-8	(172 ms)	0.0330173	[0.021-0.045] unit decrease	Affymetrix [10000000] (imputed)	N
599	chr5	1887199	1887200	rs260399	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5p15.33	IRX4	rs260399-G	0.668224	4E-8	(166 ms)	0.0329412	[0.021-0.045] unit decrease	Affymetrix [10000000] (imputed)	N
599	chr5	1887199	1887200	rs260399	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5p15.33	IRX4	rs260399-G	0.668224	3E-9	(156 ms)	0.0348065	[0.023-0.046] unit decrease	Affymetrix [10000000] (imputed)	N
599	chr5	1887199	1887200	rs260399	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5p15.33	IRX4	rs260399-G	0.668224	3E-9	(154 ms)	0.034501	[0.023-0.046] unit decrease	Affymetrix [10000000] (imputed)	N
599	chr5	1887199	1887200	rs260399	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5p15.33	IRX4	rs260399-G	0.668224	3E-8	(214 ms)	0.0325997	[0.021-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
599	chr5	1887199	1887200	rs260399	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5p15.33	IRX4	rs260399-G	0.668224	3E-8	(206 ms)	0.0325955	[0.021-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
599	chr5	1887199	1887200	rs260399	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5p15.33	IRX4	rs260399-G	0.668224	3E-8	(200 ms)	0.0328753	[0.021-0.045] unit decrease	Affymetrix [10000000] (imputed)	N
599	chr5	1887199	1887200	rs260399	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5p15.33	IRX4	rs260399-G	0.668224	3E-8	(190 ms)	0.0340385	[0.022-0.046] unit decrease	Affymetrix [10000000] (imputed)	N
599	chr5	1887199	1887200	rs260399	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5p15.33	IRX4	rs260399-G	0.668224	3E-8	(152 ms)	0.0323637	[0.021-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
599	chr5	1887199	1887200	rs260399	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5p15.33	IRX4	rs260399-G	0.668224	3E-8	(136 ms)	0.0331576	[0.021-0.045] unit decrease	Affymetrix [10000000] (imputed)	N
599	chr5	1887199	1887200	rs260399	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5p15.33	IRX4	rs260399-G	0.668224	2E-8	(176 ms)	0.0333832	[0.022-0.045] unit decrease	Affymetrix [10000000] (imputed)	N
599	chr5	1887199	1887200	rs260399	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5p15.33	IRX4	rs260399-G	0.668224	2E-8	(164 ms)	0.033482	[0.022-0.045] unit decrease	Affymetrix [10000000] (imputed)	N
599	chr5	1887199	1887200	rs260399	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5p15.33	IRX4	rs260399-G	0.668224	1E-8	(210 ms)	0.0332608	[0.021-0.045] unit decrease	Affymetrix [10000000] (imputed)	N
599	chr5	1887199	1887200	rs260399	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5p15.33	IRX4	rs260399-G	0.668224	1E-8	(198 ms)	0.0341014	[0.022-0.046] unit decrease	Affymetrix [10000000] (imputed)	N
599	chr5	1887199	1887200	rs260399	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5p15.33	IRX4	rs260399-G	0.668224	1E-8	(184 ms)	0.0339674	[0.022-0.046] unit decrease	Affymetrix [10000000] (imputed)	N
599	chr5	1889346	1889346	rs199577062	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Prostate cancer	11,599 European ancestry cases, 199,628 European ancestry controls, 5,672 East Asian ancestry cases, 84,660 East Asian ancestry controls	NA	5p15.33		rs199577062-TG	NR	1E-39		0.1676	[0.14-0.19] unit increase	Affymetrix, Illumina [25775424] (imputed)	N
599	chr5	1891173	1891174	rs4975758	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 91,972 European ancestry controls	6,852 European ancestry cases, 193,117 European ancestry controls	5p15.33	NR	rs4975758-G	0.462040183	8E-12		1.1243056	[1.09-1.16]	Affymetrix, Illumina [20400945] (imputed)	N
599	chr5	1891173	1891174	rs4975758	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	5p15.33	NR	rs4975758-G	NR	2E-48		1.101	[1.09-1.12]	Affymetrix, Illumina [29235255] (imputed)	N
599	chr5	1891173	1891174	rs4975758	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	8,611 East Asian ancestry cases, 18,809 East Asian ancestry controls	NA	5p15.33	NR	rs4975758-G	0.4	1E-31		1.226	[1.18-1.27]	Affymetrix, Illumina [10186136] (imputed)	N
599	chr5	1891173	1891174	rs4975758	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	10,368 African ancestry cases, 10,986 African ancestry controls	NA	5p15.33	NR	rs4975758-G	0.318	2E-7		1.121	[1.07-1.17]	Affymetrix, Illumina [18877980] (imputed)	N
599	chr5	1891799	1891800	rs10866527	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Prostate cancer	10,792 European ancestry cases, 410,350 European ancestry controls	NA	5p15.33		rs10866527-T	NR	8E-11		1.1184431	NR	Affymetrix [7846216] (imputed)	N
599	chr5	1892454	1892455	rs4975759	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Prostate cancer	5,408 Japanese ancestry cases, 103,939 Japanese ancestry controls	NA	5p15.33		rs4975759-G	0.419366759	5E-27		1.2593042	[1.207573459-1.313250996]	Illumina [8919992] (imputed)	N
599	chr5	1895828	1895829	rs12653946	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Prostate cancer	7,438 White British ancestry cases, 118,206 White British ancestry controls	NA	5p15.33		rs12653946-?	NR	2E-11		1.12285	[1.09-1.16]	NR [680312]	N
599	chr5	1895828	1895829	rs12653946	33293427	Emami NC	2020-12-08	Cancer Res	A large-scale association study detects novel rare variants, risk genes, functional elements, and polygenic architecture of prostate cancer susceptibility.	Prostate cancer	14,113 European ancestry cases, 194,140 European ancestry controls	NA	5p15.33	NR	rs12653946-T	NR	6E-11		1.1	NR	Affymetrix [at least 232408] (imputed)	N
599	chr5	1895828	1895829	rs12653946	31562322	Takata R	2019-09-27	Nat Commun	12 new susceptibility loci for prostate cancer identified by genome-wide association study in Japanese population.	Prostate cancer	5,088 Japanese ancestry cases, 10,682 Japanese ancestry controls	4,818 Japanese ancestry cases, 73,261 Japanese ancestry controls	5p15.33	IRX4	rs12653946-T	0.445	1E-16		1.2254902	NR	Illumina [7742602] (imputed)	N
599	chr5	1895828	1895829	rs12653946	26443449	Wang M	2015-10-07	Nat Commun	Large-scale association analysis in Asians identifies new susceptibility loci for prostate cancer.	Prostate cancer	3,000 East Asian ancestry cases, 4,394 East Asian ancestry controls	3,605 East Asian ancestry cases, 3,919 East Asian ancestry controls	5p15.33	IRX4	rs12653946-A	NR	2E-12		1.2820514	[NR]	Illumina [4550396] (imputed)	N
599	chr5	1895828	1895829	rs12653946	22923026	Cheng I	2012-08-24	Cancer Epidemiol Biomarkers Prev	Evaluating genetic risk for prostate cancer among Japanese and Latinos.	Prostate cancer	1,033 Japanese ancestry cases, 1,042 Japanese ancestry controls, 1,043 Latino cases, 1,057 Latino controls	1,583 Japanese ancestry cases, 3,386 Japanese ancestry  controls, 1,854 European ancestry cases, 3,748 European ancestry controls	5p15.33	NR	rs12653946-T	0.43	3E-7	(Japanese)	1.39	[1.22-1.57]	Illumina [528023]	N
599	chr5	1895828	1895829	rs12653946	20676098	Takata R	2010-08-01	Nat Genet	Genome-wide association study identifies five new susceptibility loci for prostate cancer in the Japanese population.	Prostate cancer	1,583 Japanese ancestry cases, 3,386 Japanese ancestry controls	3,001 Japanese ancestry cases, 5,415 Japanese ancestry controls	5p15.33	intergenic	rs12653946-T	0.44	4E-18		1.26	[1.20-1.33]	Illumina [510687]	N
599	chr5	1897178	1897179	rs13177600	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Prostate cancer	5,672 East Asian ancestry cases, 84,660 East Asian ancestry controls	NA	5p15.33		rs13177600-A	0.417216918	3E-28		0.23239844	[0.19-0.27] unit increase	Illumina [13406905] (imputed)	N
599	chr5	1912479	1912480	rs2353010	31598132	Donati G	2019-06-30	Mind Brain Educ	Genome-Wide Association Study of Latent Cognitive Measures in Adolescence: Genetic Overlap With Intelligence and Education.	Cognitive performance (processing speed)	4,611 European ancestry adolescents	NA	5p15.33	LOC101929081	rs2353010-?	NR	1E-6		0.118	[0.059-0.177] unit increase	Illumina [6319684] (imputed)	N
599	chr5	1944262	1944263	rs17610154	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Spatial processing	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	5p15.33	IRX4	rs17610154-T	NR	2E-6		0.13574192	[0.079-0.193] unit decrease	Illumina [> 6200000] (imputed)	N
600	chr5	1983930	1983931	rs73732514	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		5p15.33	Intergenic	rs73732514-A	0.929	2E-6	(liability model)	0.14	[0.081-0.199] unit increase	NR [19725427] (imputed)	N
600	chr5	1985844	1985845	rs1486938	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5p15.33	NDUFS6	rs1486938-?	NR	7E-6	(PC 38:3)	0.18545589	[0.1-0.27] unit increase	Affymetrix [at least 2500000] (imputed)	N
600	chr5	2015102	2015103	rs6867032	26528553	Davenport ER	2015-11-03	PLoS One	Genome-Wide Association Studies of the Human Gut Microbiota.	Gut microbiome composition (winter)	93 Hutterite individuals	NA	5p15.33	NR	rs6867032-?		7E-7	(family_Neisseriaceae)	0.7002075	[0.45-0.95] unit increase	Affymetrix [211319]	N
600	chr5	2042827	2042828	rs6885176	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5p15.33	NR	rs6885176-A	0.0331	7E-9	(TPM4)	0.07922	NR unit increase	Illumina [1671387] (imputed)	N
600	chr5	2055327	2055328	rs10155613	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Perceived sweetness of sucrose	686 European ancestry twins	NA	5p15.33	RP11-259O2.3	rs10155613-C	0.07	3E-6		0.96	[0.57-1.35] unit increase	Illumina [5833901] (imputed)	N
601	chr5	2109900	2109901	rs6879627	20686608	Low SK	2010-07-29	PLoS One	Genome-wide association study of pancreatic cancer in Japanese population.	Pancreatic cancer	991 Japanese ancestry cases, 5,209 Japanese ancestry controls	NA	5p15.33	LOC731559	rs6879627-G	0.52	8E-6	(allelic)	1.25	[1.14-1.39]	Illumina [420236]	N
601	chr5	2131122	2131123	rs12521827	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota (alpha diversity)	858 Metropolitan French ancestry individuals	NA	5p15.33	NR	rs12521827-?	NR	4E-6	(ACE metric)	1.15955	[0.67-1.65] unit increase	Illumina [5293637] (imputed)	N
601	chr5	2149209	2149210	rs7379133	25644384	Davies G	2015-02-03	Mol Psychiatry	Genetic contributions to variation in general cognitive function: a meta-analysis of genome-wide association studies in the CHARGE consortium (N=53949).	Cognitive function	51,719 European ancestry individuals, 1,473 Erasmus Rucphen (founder/genetic isolate) individuals, 327 Korculan (founder/genetic isolate) individuals, 430 Orcadian (founder/genetic isolate) individuals	NA	5p15.33	intergenic	rs7379133-?	NR	8E-6		0.1113	[0.062-0.160] unit increase	Affymetrix, Illumina [2478500] (imputed)	N
601	chr5	2177692	2177693	rs112778462	28430825	Ng MCY	2017-04-21	PLoS Genet	Discovery and fine-mapping of adiposity loci using high density imputation of genome-wide association studies in individuals of African ancestry: African Ancestry Anthropometry Genetics Consortium.	Body mass index (adult)	16,559 African ancestry men, 26,193 African ancestry women	2,458 African ancestry men, 7,685 African ancestry women, 152,893 European ancestry men, 171,977 European ancestry women	5p15.33	IRX2, IRX4	rs112778462-A	0.024	8E-7	(AA)	0.122	[0.073-0.171] unit increase	Affymetrix, Illumina [17972087] (imputed)	N
601	chr5	2177692	2177693	rs112778462	28430825	Ng MCY	2017-04-21	PLoS Genet	Discovery and fine-mapping of adiposity loci using high density imputation of genome-wide association studies in individuals of African ancestry: African Ancestry Anthropometry Genetics Consortium.	Body mass index (adult)	16,559 African ancestry men, 26,193 African ancestry women	2,458 African ancestry men, 7,685 African ancestry women, 152,893 European ancestry men, 171,977 European ancestry women	5p15.33	IRX2, IRX4	rs112778462-A	0.024	7E-9	(AA,Women)	0.175	[0.12-0.23] unit increase	Affymetrix, Illumina [17972087] (imputed)	N
601	chr5	2187985	2187986	rs750187981	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	5p15.33	Y_RNA	rs750187981-A	0.0012	6E-6		1.7102	[0.97-2.45] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
602	chr5	2239823	2239824	rs139288035	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia	11,197 European ancestry low myopic cases, 21,416 European ancestry emmetropia controls	NA	5p15.33	NR	rs139288035-?	NR	3E-6		0.442697	[0.26-0.63] unit increase	NR [13958389] (imputed)	N
602	chr5	2246468	2246469	rs36162355	31533690	Orlova E	2019-09-18	BMC Oral Health	Pilot GWAS of caries in African-Americans shows genetic heterogeneity.	Dental caries (decayed and filled deciduous tooth surfaces)	96 African American children	NA	5p15.33	IRX4, IRX2	rs36162355-?		4E-6		11.62	[7.85-15.39] unit increase	Illumina [~ 4900000] (imputed)	N
602	chr5	2257716	2257717	rs79861969	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Small vessel stroke	333 Indian ancestry cases, 2,154 Indian ancestry controls	NA	5p15.33		rs79861969-?	NR	3E-6		1.1030427	[1.05835526876063-1.14961694802257]	Illumina [7827597] (imputed)	N
602	chr5	2278068	2278069	rs57818938	32126890	Ter Hark SE	2020-03-04	J Psychopharmacol	A new genetic locus for antipsychotic-induced weight gain: A genome-wide study of first-episode psychosis patients using amisulpride (from the OPTiMiSE cohort).	Weight gain in amisulpride-treated first-episode psychosis	184 European ancestry individuals, 9 African ancestry individuals, 6 Hispanic/Latin American individuals, 3 South Asian ancestry individuals, 2 East Asian ancestry individuals, 2 individuals	NA	5p15.33	Y_RNA	rs57818938-T	0.0611	1E-6		0.9321	NR unit increase	Illumina [4533042] (imputed)	N
602	chr5	2294687	2294688	rs316577	25987507	Minica CC	2015-05-19	Behav Genet	Heritability, SNP- and Gene-Based Analyses of Cannabis Use Initiation and Age at Onset.	Cannabis use (initiation)	1,357 European ancestry users, 5,387 European ancestry never users	NA	5p15.33	NR	rs316577-A	NR	5E-6		0.23	[0.13-0.33] unit decrease	NR [5896100] (imputed)	N
602	chr5	2335580	2335581	rs17586674	20125193	Cirulli ET	2010-02-03	Eur J Hum Genet	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American individuals, up to 74 South Asian ancestry individuals	NA	5p15.33	AC138982.2	rs17586674-?	NR	5E-6	(Colorword)			Illumina [up to 563855]	N
603	chr5	2377444	2377445	rs493321	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs none or mild)	136 Finnish ancestry severe erosion cases, 1011 Finnish ancestry mild or no erosion controls	NA	5p15.33	IRX1, IRX4	rs493321-?	NR	5E-6				Illumina [NR] (imputed)	N
603	chr5	2377444	2377445	rs493321	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs non-severe)	86 Finnish ancestry male severe erosion cases, 50 Finnish ancestry female severe erosion cases, 817 Finnish ancestry male non-severe erosion controls, 991 Finnish ancestry female non-severe erosion controls	NA	5p15.33	IRX1, IRX4	rs493321-?	NR	8E-7		2.3	[1.63-3.18]	Illumina [NR] (imputed)	N
603	chr5	2388854	2388855	rs465787	32564518	Ye J	2020-06-20	Clin Transl Med	Association between herpes simplex virus 1 exposure and the risk of depression in UK Biobank.	Depression x herpes simplex 1 infection interaction	1,464 British ancestry cases, 1,487 British ancestry controls	NA	5p15.33	NR	rs465787-?		1E-6	(dominant)			NR [NR] (imputed)	N
603	chr5	2391360	2391361	rs414421	32564518	Ye J	2020-06-20	Clin Transl Med	Association between herpes simplex virus 1 exposure and the risk of depression in UK Biobank.	Depression x herpes simplex 1 infection interaction	1,464 British ancestry cases, 1,487 British ancestry controls	NA	5p15.33	NR	rs414421-?		2E-6	(dominant)			NR [NR] (imputed)	N
603	chr5	2391361	2391362	rs377094	32564518	Ye J	2020-06-20	Clin Transl Med	Association between herpes simplex virus 1 exposure and the risk of depression in UK Biobank.	Depression x herpes simplex 1 infection interaction	1,464 British ancestry cases, 1,487 British ancestry controls	NA	5p15.33	NR	rs377094-?		2E-6	(dominant)			NR [NR] (imputed)	N
603	chr5	2392830	2392831	rs160730	32564518	Ye J	2020-06-20	Clin Transl Med	Association between herpes simplex virus 1 exposure and the risk of depression in UK Biobank.	Depression x herpes simplex 1 infection interaction	1,464 British ancestry cases, 1,487 British ancestry controls	NA	5p15.33	NR	rs160730-?		2E-6	(dominant)			NR [NR] (imputed)	N
603	chr5	2448589	2448590	rs4866650	25140149	Hohman TJ	2014-08-04	Front Aging Neurosci	Genetic variation modifies risk for neurodegeneration based on biomarker status.	Left inferior lateral ventricle volume (Cerebrospinal fluid biomarker status interaction)	382 European ancestry mild cognitive impairment cases, 114 European ancestry Alzheimer's disease cases, 194 European ancestry controls	NA	5p15.33	intergenic	rs4866650-?		1E-9	(Dilation, amyloid positive)	6.15	[NR] unit increase interaction	Illumina [296267]	N
604	chr5	2492067	2492068	rs459280	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	5p15.33		rs459280-C	0.39	4E-8		5.49	z score increase	Affymetrix [9061022] (imputed)	N
604	chr5	2497483	2497484	rs462722	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	5p15.33		rs462722-G	0.35	2E-8		5.63	z score increase	Affymetrix [9061022] (imputed)	N
604	chr5	2532479	2532480	rs72720951	30954325	Kamboh MI	2019-03-11	Neurobiol Aging	Population-based genome-wide association study of cognitive decline in older adults free of dementia: identification of a novel locus for the attention domain.	Age-related cognitive decline (language) (slope of z-scores)	1,145 European ancestry individuals	NA	5p15.33	LOC100506858, IRX2	rs72720951-G	0.19	5E-6		0.23	unit increase	Illumina [5600000] (imputed)	N
604	chr5	2545649	2545650	rs116383510	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-18 levels	3,636 Finnish ancestry individuals	NA	5p15.33	NR	rs116383510-C		3E-7		0.5426	[0.34-0.75] SD units increase	NR [10700000] (imputed)	N
604	chr5	2610659	2610660	rs16870131	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5p15.33	C5orf38	rs16870131-?	NR	9E-6	(xanthosine)	0.35258	[0.2-0.51] unit increase	Affymetrix [at least 2500000] (imputed)	N
604	chr5	2612746	2612747	rs2004187	33979322	Currant H	2021-05-12	PLoS Genet	Genetic variation affects morphological retinal phenotypes extracted from UK Biobank optical coherence tomography images.	Retinal nerve fibre layer thickness or ganglion cell inner plexiform layer thickness (MTAG)	31,434 European ancestry individuals	NA	5p15.33	NR	rs2004187-C	0.6	1E-11		0.25	[0.17-0.33] unit increase	Affymetrix [9231066] (imputed)	N
604	chr5	2612746	2612747	rs2004187	33979322	Currant H	2021-05-12	PLoS Genet	Genetic variation affects morphological retinal phenotypes extracted from UK Biobank optical coherence tomography images.	Retinal nerve fibre layer (RNFL) thickness	31,434 European ancestry individuals	NA	5p15.33	NR	rs2004187-C	0.6	1E-11		0.25	[0.17-0.33] unit increase	Affymetrix [9231066] (imputed)	N
604	chr5	2612746	2612747	rs2004187	33979322	Currant H	2021-05-12	PLoS Genet	Genetic variation affects morphological retinal phenotypes extracted from UK Biobank optical coherence tomography images.	Ganglion cell inner plexiform layer (GCIPL) thickness	31,434 European ancestry individuals	NA	5p15.33	NR	rs2004187-C	0.6	3E-9		0.29	[0.19-0.39] unit increase	Affymetrix [9231066] (imputed)	N
604	chr5	2612746	2612747	rs2004187	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	5p15.33	LOC100506858, LSINCT5	rs2004187-?	NR	1E-12		0.48	[0.34-0.62] unit decrease	Affymetrix [11100000] (imputed)	N
605	chr5	2641930	2641931	rs529499594	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	5p15.33		rs529499594-G	0.0012843	5E-6		0.43465	[0.25-0.62] unit increase	Affymetrix [15580782] (imputed)	N
605	chr5	2655778	2655779	rs16870234	33012170	Lanfear DE	2020-10-04	Circ Heart Fail	Polygenic Score for Beta-Blocker Survival Benefit in European Ancestry Patients with Reduced Ejection Fraction Heart Failure.	Beta blocker survival benefit in heart failure with reduced ejection fraction (time to all cause mortality x beta blocker interaction)	248 European ancestry individuals		5p15.33	intergenic	rs16870234-?		1E-6				Affymetrix [7000000] (imputed)	N
605	chr5	2664477	2664478	rs75778424	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	5p15.33	NR	rs75778424-?	NR	2E-6		0.3107	[NR] unit increase	Illumina [up to 11892802] (imputed)	N
605	chr5	2671056	2671057	rs10066976	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5p15.33	C5orf38	rs10066976-?	NR	9E-6	(glycerol)	0.19801892	[0.11-0.29] unit decrease	Affymetrix [at least 2500000] (imputed)	N
605	chr5	2683884	2683885	rs2935618	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	5p15.33	VRK2, FANCL	rs2935618-?		4E-8				NR [7428630] (imputed)	N
605	chr5	2688940	2688941	rs16870285	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5p15.33	C5orf38	rs16870285-?	NR	9E-6	(PC 38:4)	0.22280473	[0.12-0.32] unit increase	Affymetrix [at least 2500000] (imputed)	N
605	chr5	2716545	2716546	rs117330212	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels	3,806 African American individuals	NA	5p15.33		rs117330212-?	NR	4E-6		0.31	[0.18-0.44] unit increase	Affymetrix, Illumina [NR] (imputed)	N
605	chr5	2724361	2724362	rs2173226	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	5p15.33	intergenic	rs2173226-G	0.342	8E-6	(Hip circumference change )	0.03	[NR] cm/y increase	Illumina [899892]	N
605	chr5	2726223	2726224	rs2173225	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5p15.33	C5orf38	rs2173225-?	NR	8E-7	(SM 14:0)	0.73732615	[0.44-1.03] unit increase	Affymetrix [at least 2500000] (imputed)	N
606	chr5	2754431	2754432	rs115002322	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5p15.33	NR	rs115002322-A	0.02091	5E-11	(PTGR1)	1.264	NR unit increase	Illumina [1671387] (imputed)	N
606	chr5	2777310	2777311	rs7709328	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	5p15.33	NR	rs7709328-A	0.4164	3E-7	(EA)	0.0327	[0.02-0.045] unit increase	Illumina [~ 11800000] (imputed)	N
606	chr5	2788905	2788906	rs7702905	25343990	Cornelis MC	2014-10-24	Hum Mol Genet	Genome-wide association study of selenium concentrations.	Toenail selenium levels	4,162 European ancestry individuals	NA	5p15.33	IRX2, C5orf38	rs7702905-A	0.28	8E-6		0.017	[0.0092-0.0248] unit decrease	Affymetrix, Illumina [2378986] (imputed)	N
606	chr5	2795775	2795776	rs16870453	30995994	Truong DT	2019-04-17	J Med Genet	Multivariate genome-wide association study of rapid automatised naming and rapid alternating stimulus in Hispanic American and African-American youth.	Latent naming speed	883 Hispanic American children, 441 African American children	NA	5p15.33	intergenic	rs16870453-T	NR	2E-6		4.738	NR z score increase	Illumina [1265623]	N
607	chr5	2910992	2910993	rs12522002	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	5p15.33	Intergenic	rs12522002-C	0.7731	3E-8	(MTAG)	0.0109	[0.007-0.0148] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
607	chr5	2920099	2920100	rs2934510	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	5p15.33	Intergenic	rs2934510-T	0.2319	4E-9	(MTAG)	0.0159	[0.011-0.021] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
607	chr5	2929713	2929714	rs10475186	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	5p15.33	Intergenic	rs10475186-A	0.2392	5E-9	(MTAG)	0.009	[0.0061-0.0119] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
607	chr5	3000984	3000985	rs11747688	32771030	Tangtanatakul P	2020-08-08	Arthritis Res Ther	Meta-analysis of genome-wide association study identifies FBN2 as a novel locus associated with systemic lupus erythematosus in Thai population.	Systemic lupus erythematosus	487 Thai cases, 1,606 Thai controls	405 Thai cases, 1,590 Thai controls	5p15.33	RP11-35O7.1, CTD-2029E14.1	rs11747688-G	0.09	8E-7		1.6624	[NR]	Illumina [421909] (imputed)	N
608	chr5	3036595	3036596	rs191168	31447353	Maciukiewicz M	2019-08-22	Schizophr Res	Genome-wide association study on antipsychotic-induced weight gain in Europeans and African-Americans.	Antipsychotic drug-induced weight gain in schizophrenia	144 European ancestry individuals, 57 African American individuals	NA	5p15.33	RP11-35O7.1	rs191168-?		8E-6	(EA)	0.39	unit increase	Illumina [1819374] (imputed)	N
608	chr5	3052291	3052292	rs60132896	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mode of anisotropy)	17,706 European ancestry individuals	NA	5p15.33	NR	rs60132896-?		8E-9	(Posterior limb of internal capsule)			NR [8955960] (imputed)	N
608	chr5	3052291	3052292	rs60132896	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	5p15.33	NR	rs60132896-?		3E-8	(Posterior limb of internal capsule)			NR [8955960] (imputed)	N
608	chr5	3057547	3057548	rs55696167	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	5p15.33	intergenic	rs55696167-A	NR	4E-6	(EA)			Illumina [up to 11995908] (imputed)	N
608	chr5	3057547	3057548	rs55696167	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	5p15.33	intergenic	rs55696167-A	NR	4E-6				Illumina [up to 11995908] (imputed)	N
608	chr5	3092191	3092192	rs6873793	23166209	Smith JG	2012-11-19	Circ Cardiovasc Genet	Impact of ancestry and common genetic variants on QT interval in African Americans.	QT interval	13,105 African American individuals	NA	5p15.33	NR	rs6873793-C	0.40	1E-6		1.47	[0.88-2.06] unit increase	Affymetrix, Illumina [2800000] (imputed)	N
608	chr5	3104934	3104935	rs6876942	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Coronary artery disease in dyslipidemia	768 Korean ancestry cases, 19,999 Korean ancestry controls	NA	5p15.33		rs6876942-T	0.1334	1E-6		1.403	[1.22299999999999-1.609]	Affymetrix [7975321] (imputed)	N
608	chr5	3104934	3104935	rs6876942	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Cardio-cerebrovascular disease in dyslipidemia	1,039 Korean ancestry cases, 19,727 Korean ancestry controls	NA	5p15.33		rs6876942-T	0.1334	7E-6		1.322	[1.171-1.493]	Affymetrix [7975321] (imputed)	N
608	chr5	3123774	3123775	rs12657742	34062886	Nazarian A	2021-05-01	Genes (Basel)	Genome-Wide Analysis of Sex Disparities in the Genetic Architecture of Lung and Colorectal Cancers.	Lung cancer	237 European ancestry female cases, 220 European ancestry male cases, 8,354 European ancestry female controls, 6,278 European ancestry male controls	NA	5p15.33	LINC01377	rs12657742-A	0.864	4E-6	(Male)	0.555	[0.43-0.68]	NR [up to 1668434] (imputed)	N
608	chr5	3126583	3126584	rs460692	30846698	Dashti HS	2019-03-07	Nat Commun	Genome-wide association study identifies genetic loci for self-reported habitual sleep duration supported by accelerometer-derived estimates.	Sleep duration	446,118 European ancestry individuals	47,180  adults, 10,554 children or adolescents	5p15.33	NR	rs460692-C	NR	3E-9		1.206	unit increase	Affymetrix [14661600] (imputed)	N
608	chr5	3141414	3141415	rs7722169	33209044	Ahn Y	2020-11-12	Diabetes Metab Syndr Obes	Identification of Genetic Variants for Female Obesity and Evaluation of the Causal Role of Genetically Defined Obesity in Polycystic Ovarian Syndrome.	Waist circumference	4,658 Korean ancestry females	5,295 Korean ancestry females	5p15.33	NR	rs7722169-T	0.09	2E-7		1.233	[0.76-1.7] unit decrease	Affymetrix [NR] (imputed)	N
609	chr5	3188095	3188096	rs1106859	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	5p15.33	NR	rs1106859-G	0.104	1E-8		0.0104599	[0.0069-0.0141] unit decrease	NR [9732723] (imputed)	N
609	chr5	3221461	3221462	rs13356434	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Gordonibacter abundance in stool	5,959 Finnish ancestry individuals	NA	5p15.33		rs13356434-T	0.175021	2E-8		0.0810397	[0.053-0.109] unit increase	Illumina [7980478] (imputed)	N
609	chr5	3224849	3224850	rs12658153	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Gordonibacter pamelaeae abundance in stool	5,959 Finnish ancestry individuals	NA	5p15.33		rs12658153-G	0.182322	2E-9		0.0869298	[0.058-0.115] unit increase	Illumina [7980478] (imputed)	N
609	chr5	3238670	3238671	rs1874173	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5p15.33	C5orf38	rs1874173-?	NR	6E-6	(SM 22:1)	0.16043164	[0.091-0.23] unit increase	Affymetrix [at least 2500000] (imputed)	N
609	chr5	3264388	3264389	rs13163845	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	5p15.33		rs13163845-?	NR	4E-8				NR [~ 8900000] (imputed)	N
609	chr5	3264388	3264389	rs13163845	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	5p15.33	Intergenic	rs13163845-T	0.8481	3E-12	(MTAG)	0.0161	[0.012-0.021] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
609	chr5	3264388	3264389	rs13163845	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	5p15.33		rs13163845-T	0.8488	5E-14		0.0149	[0.011-0.019] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
609	chr5	3264388	3264389	rs13163845	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	5p15.33	Intergenic	rs13163845-T	0.8488	8E-16	(MTAG)	0.0149	[0.011-0.018] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
609	chr5	3273127	3273128	rs34042385	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	5p15.33		rs34042385-?	NR	2E-8				NR [~ 8900000] (imputed)	N
609	chr5	3276695	3276696	rs61670327	23962720	Speed D	2013-08-19	Hum Mol Genet	A genome-wide association study and biological pathway analysis of epilepsy prognosis in a prospective cohort of newly treated epilepsy.	Epilepsy (remission after treatment)	889 European and unknown ancestry epilepsy cases	NA	5p15.33	NR	rs61670327-A	0.52	7E-7		1.7241	[NR]	Illumina [6923995] (imputed)	N
610	chr5	3288444	3288445	rs11133982	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Non-melanoma skin cancer	5,912 European ancestry cases, 181,740 European ancestry controls		5p15.33	NR	rs11133982-T	NR	4E-6		1.1404785	[1.08-1.21]	Affymetrix [5734850] (imputed)	N
610	chr5	3337276	3337277	rs111774530	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5p15.33	NR	rs111774530-A	0.01045	7E-9	(MARC2)	0.1724	NR unit increase	Illumina [1671387] (imputed)	N
610	chr5	3364023	3364024	rs6878458	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5p15.33	C5orf38	rs6878458-?	NR	7E-6	(taurine)	0.22499359	[0.13-0.32] unit decrease	Affymetrix [at least 2500000] (imputed)	N
610	chr5	3394571	3394572	rs35168133	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	5p15.33	Intergenic	rs35168133-A	0.3019	3E-9	(MTAG)	0.0115	[0.0078-0.0152] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
610	chr5	3394571	3394572	rs35168133	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	5p15.33	Intergenic	rs35168133-G	0.698	7E-12		0.0169	[0.012-0.022] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
611	chr5	3411059	3411060	rs56849713	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	5p15.33	NA	rs56849713-G		5E-10		0.0115641	[0.0079-0.0152] unit decrease	Illumina [13288253] (imputed)	N
611	chr5	3433647	3433648	rs35049342	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	5p15.33	Intergenic	rs35049342-T	0.6756	6E-14	(MTAG)	0.0132	[0.0097-0.0167] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
611	chr5	3437296	3437297	rs16871807	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	5p15.33		rs16871807-T	0.3297	2E-9		0.009	[0.0061-0.0119] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
611	chr5	3437296	3437297	rs16871807	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	5p15.33	Intergenic	rs16871807-T	0.3297	2E-13	(MTAG)	0.0102	[0.0075-0.0129] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
611	chr5	3437547	3437548	rs10512699	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	5p15.33	NR	rs10512699-?	NR	4E-6		4.611	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
611	chr5	3439064	3439065	rs112915522	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Diastolic blood pressure (baseline)	13,137 European ancestry individuals	2,451 European ancestry individuals	5p15.33	NR	rs112915522-A	0.9823	9E-7		2.4226	[1.45-3.39] mmHg increase	Affymetrix, Illumina [NR] (imputed)	N
611	chr5	3445350	3445351	rs599673	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	5p15.33		rs599673-C	0.7598	3E-8	(conditional-joint)	0.0091	[0.006-0.0122] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
611	chr5	3488461	3488462	rs16871902	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	5p15.33		rs16871902-?	NR	9E-11				NR [~ 8900000] (imputed)	N
611	chr5	3513484	3513485	rs698147	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		5p15.33	IRX1	rs698147-A	0.456461	2E-10		0.00877987	[0.0061-0.0115] unit increase	Affymetrix [12370749]	N
611	chr5	3513484	3513485	rs698147	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	5p15.33	NR	rs698147-?	NR	6E-11				Affymetrix [~ 8270000] (imputed)	N
611	chr5	3513484	3513485	rs698147	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	5p15.33	NA	rs698147-A	0.447	1E-11		0.0116	[0.0083-0.0149] unit increase	NR [~ 27400000] (imputed)	N
611	chr5	3515518	3515519	rs710995	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	5p15.33		rs710995-G	NR	2E-8		0.0116	[0.0075-0.0157] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
611	chr5	3525439	3525440	rs710987	26980576	Kim K	2016-03-15	J Rheumatol	Response to Intravenous Cyclophosphamide Treatment for Lupus Nephritis Associated with Polymorphisms in the FCGR2B-FCRLA Locus.	Response to cyclophosphamide in systemic lupus erythematosus with lupus nephritis	93 Korean ancestry responder cases, 16 Korean ancestry non-responder cases	NA	5p15.33	LOC285577	rs710987-?	NR	2E-6				Illumina [491617]	N
612	chr5	3545546	3545547	rs76258369	29884306	Workalemahu T	2018-04-16	Placenta	Genetic variations and risk of placental abruption: A genome-wide association study and meta-analysis of genome-wide association studies.	Placental abruption	959 cases, 1553 controls	NA	5p15.33	intergenic	rs76258369-T		3E-6		1.56	[1.3-1.88]	Illumina [up to 4983952] (imputed)	N
612	chr5	3558537	3558538	rs10512697	22542470	Ovsyannikova IG	2012-04-25	Vaccine	Genome-wide association study of antibody response to smallpox vaccine.	Immune response to smallpox vaccine (IL-6)	217 African American individuals, 580 European ancestry individuals, 217 Hispanic individuals	NA	5p15.33	IRX1	rs10512697-?		9E-7	(Hispanic)			Illumina [NR]	N
612	chr5	3568736	3568737	rs11133993	29563342	Li XS	2018-03-22	JCI Insight	Untargeted metabolomics identifies trimethyllysine, a TMAO-producing nutrient precursor, as a predictor of incident cardiovascular disease risk.	Plasma trimethyllysine levels	1,297 European ancestry individuals	NA	5p15.33	NR	rs11133993-A	0.28	5E-7		0.077	[0.048-0.106] unit increase	Affymetrix [9012028] (imputed)	N
612	chr5	3574563	3574564	rs6867471	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	5p15.33	NR	rs6867471-?	NR	4E-10				Affymetrix [~ 8270000] (imputed)	N
612	chr5	3574563	3574564	rs6867471	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	5p15.33		rs6867471-?	NR	6E-10				NR [~ 8900000] (imputed)	N
612	chr5	3585794	3585795	rs1867708	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	5p15.33	NR	rs1867708-?	NR	2E-10				Affymetrix [NR]	N
612	chr5	3595977	3595978	rs6420041	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	5p15.33	IRX1	rs6420041-G	0.4501	8E-9		5.769	NR z score decrease	Illumina [26237160] (imputed)	N
612	chr5	3595977	3595978	rs6420041	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Glomerular filtration rate	143,658 Japanese ancestry individuals	NA	5p15.33	IRX1	rs6420041-?	NR	3E-8		0.02263	[0.015-0.031] unit increase novel	Illumina [6108953] (imputed)	N
612	chr5	3597829	3597830	rs2166365	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	5p15.33	IRX1, CTD-2012M11.3	rs2166365-G	NR	4E-12		0.023692	[0.017-0.03] unit decrease	Affymetrix [319769] (imputed)	N
612	chr5	3597829	3597830	rs2166365	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	5p15.33	IRX1, CTD-2012M11.3	rs2166365-G	NR	4E-12		0.0237141	[0.017-0.03] unit decrease	Affymetrix [319769] (imputed)	N
612	chr5	3597829	3597830	rs2166365	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	5p15.33	IRX1, CTD-2012M11.3	rs2166365-G	NR	5E-10		0.0220147	[0.015-0.029] unit increase	Affymetrix [321788] (imputed)	N
612	chr5	3597829	3597830	rs2166365	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	5p15.33	IRX1, CTD-2012M11.3	rs2166365-G	NR	4E-8		0.0187	[0.012-0.025] unit increase	Affymetrix [321016] (imputed)	N
612	chr5	3597829	3597830	rs2166365	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	5p15.33	NR	rs2166365-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
612	chr5	3597829	3597830	rs2166365	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	5p15.33		rs2166365-?	NR	4E-8				NR [~ 8900000] (imputed)	N
612	chr5	3597829	3597830	rs2166365	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	5p15.33	NR	rs2166365-A	0.7777	3E-7		0.0112	[0.0069-0.0155] unit increase	NR [~ 27400000] (imputed)	N
612	chr5	3604751	3604752	rs6866330	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	5p15.33	CTD-2012M11.3	rs6866330-T	0.499105	5E-11		0.015227148	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
612	chr5	3604751	3604752	rs6866330	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5p15.33	NR	rs6866330-G	0.509883	9E-10				Affymetrix, Illumina [22063850] (imputed)	N
612	chr5	3604751	3604752	rs6866330	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	5p15.33	NR	rs6866330-G	0.502502	5E-12		0.013857	[0.0099-0.0178] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
612	chr5	3604751	3604752	rs6866330	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	5p15.33		rs6866330-?	NR	4E-8				NR [~ 8900000] (imputed)	N
612	chr5	3621543	3621544	rs1445866	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (multi-trait analysis)	90,939 European ancestry individuals	NA	5p15.33	IRX1, LOC101929153	rs1445866-G	0.67	7E-10		0.0057	NR unit decrease	Affymetrix, Illumina [8002429] (imputed)	N
612	chr5	3621543	3621544	rs1445866	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (adjusted for vertical disc diameter)	67,040 British ancestry individuals	NA	5p15.33	IRX1, LOC101929153	rs1445866-G	0.67	2E-7		0.0051	NR unit decrease	Affymetrix [at least 8002429] (imputed)	N
612	chr5	3650342	3650343	rs59920395	26718567	Williams SR	2015-12-30	Neurology	Shared genetic susceptibility of vascular-related biomarkers with ischemic and recurrent stroke.	Thrombin-antithrombin complex levels in ischemic stroke	up to 1,725 European ancestry cases, up to 258 African ancestry cases, up to 117 cases	NA	5p15.33	NR	rs59920395-?	NR	5E-7				Illumina [7500450] (imputed)	N
612	chr5	3657280	3657281	rs114950282	29213071	Mendez-Giraldez R	2017-12-06	Sci Rep	GWAS of the electrocardiographic QT interval in Hispanics/Latinos generalizes previously identified loci and identifies population-specific signals.	QT interval	15,997 Hispanic/Latino individuals	NA	5p15.33	IRX1	rs114950282-T	0.01	9E-8		8.44	[5.34-11.54] ms decrease	Affymetrix, Illumina [up to 17586686] (imputed)	N
613	chr5	3671005	3671006	rs1502644	26815016	Julia A	2016-01-27	Arthritis Rheumatol	Identification of IRX1 as a Risk Locus for Rheumatoid Factor Positivity in Rheumatoid Arthritis in a Genome-Wide Association Study.	Rheumatoid factor seropositivity in rheumatoid arthritis	896 Spanish ancestry rheumatoid factor-positive cases, 282 Spanish ancestry rheumatoid factor-negative cases	472 Spanish ancestry rheumatoid factor-positive cases, 190 Spanish ancestry rheumatoid factor-negative cases	5p15.33	IRX1	rs1502644-?	NR	1E-8		2.33	[1.72-3.13]	Illumina [509374]	N
613	chr5	3704250	3704251	rs34681481	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	5p15.33		rs34681481-?	NR	1E-8				NR [~ 8900000] (imputed)	N
613	chr5	3706049	3706050	rs954767	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	5p15.33		rs954767-?	NR	7E-9				NR [~ 8900000] (imputed)	N
613	chr5	3706049	3706050	rs954767	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	5p15.33	IRX1	rs954767-A	0.7391	5E-16		0.1389	[0.11-0.17] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
613	chr5	3727178	3727179	rs1566691	27143689	Hertz DL	2016-05-03	Clin Cancer Res	Pharmacogenetic Discovery in CALGB (Alliance) 90401 and Mechanistic Validation of a VAC14 Polymorphism that Increases Risk of Docetaxel-Induced Neuropathy.	Docetaxel-induced peripheral neuropathy in metastatic castrate-resistant prostate cancer	50 European ancestry cases with neuropathy, 573 European ancestry cases without neuropathy	NA	5p15.33	Intergenic	rs1566691-?	NR	4E-6		3.64	[2.03-6.52]	Illumina [498081]	N
613	chr5	3768168	3768169	rs76863248	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5p15.33	NR	rs76863248-T	0.02787	7E-10	(LTF)	0.236	NR unit increase	Illumina [1671387] (imputed)	N
614	chr5	3812999	3813000	rs10072600	34642315	Ferreiro-Iglesias A	2021-10-12	Nat Commun	Germline determinants of humoral immune response to HPV-16 protect against oropharyngeal cancer.	Human papilloma virus 16 positive oropharyngeal cancer	1,078 European ancestry cases, 5,256 European ancestry controls	NA	5p15.33		rs10072600-A	NR	2E-6		0.7687		Illumina [7574753] (imputed)	N
614	chr5	3844540	3844541	rs2963791	30621171	Coltell O	2019-01-04	Nutrients	Genome-Wide Association Study (GWAS) on Bilirubin Concentrations in Subjects with Metabolic Syndrome: Sex-Specific GWAS Analysis and Gene-Diet Interactions in a Mediterranean Population.	Serum bilirubin levels in metabolic syndrome	188 European ancestry male individuals, 242 European ancestry female individuals	NA		intergenic	rs2963791-C	0.232	7E-7	(women)	0.152	[0.093-0.211] mg/dL increase	Illumina [622468]	N
614	chr5	3862954	3862955	rs115102937	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Myringotomy	4,138 European ancestry cases, 85,089 European ancestry controls	NA	5p15.33	NR	rs115102937-?	NR	9E-6		2.4045	[0.91-3.9] unit increase	Illumina [at least 560000] (imputed)	N
614	chr5	3875773	3875774	rs186066047	27601451	Sanders AE	2016-09-06	J Dent Res	Chronic Periodontitis Genome-wide Association Study in the Hispanic Community Health Study / Study of Latinos.	Chronic periodontitis (mean interproximal clinical attachment level)	10,935 Hispanic individuals	4,402 European ancestry individuals, 908 African American individuals	5p15.33	IRX1, LINC01017, LINC01019	rs186066047-A	0.003	2E-7	(Hispanics)	0.225	[0.14-0.31] unit increase	Illumina [~ 20000000] (imputed)	N
614	chr5	3902586	3902587	rs189382310	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-to-hip ratio adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,049 whole genome sequenced individuals, 29,518 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,001 Mylopotamos (founder/genetic isolate) individuals, 867 Pomak (founder/genetic isolate) individuals	206,045 European ancestry individuals	5p15.33	CTD-2287N17.1	rs189382310-A	0.0034	8E-6		0.3934	[0.22-0.57] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
615	chr5	3939475	3939476	rs492478	20125193	Cirulli ET	2010-02-03	Eur J Hum Genet	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American individuals, up to 74 South Asian ancestry individuals	NA	5p15.33	AC025187.6	rs492478-?	NR	4E-6	(Colorword)			Illumina [up to 563855]	N
615	chr5	3997829	3997830	rs11748824	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (vasodilators used in cardiac diseases)	5,546 European ancestry cases, 237,113 European ancestry controls, 17,050 East Asian ancestry cases, 161,676 East Asian ancestry controls	NA	5p15.33		rs11748824-C	NR	1E-8		0.0764	[0.05-0.102] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
615	chr5	4010134	4010135	rs10475249	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	5p15.33	NA	rs10475249-C	0.5488	1E-11		0.0134	[0.0095-0.0173] unit increase	NR [~ 27400000] (imputed)	N
615	chr5	4011810	4011811	rs10063823	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	5p15.33	IRX1, LINC02114	rs10063823-?	NR	8E-7		0.0265187	[0.016-0.037] unit decrease	Illumina [4804024] (imputed)	N
615	chr5	4013640	4013641	rs645402	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA		NR	rs645402-?	NR	3E-14				Affymetrix [~ 8270000] (imputed)	N
615	chr5	4018761	4018762	rs4702334	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	5p15.33		rs4702334-?	NR	1E-13				NR [~ 8900000] (imputed)	N
615	chr5	4021400	4021401	rs1829276	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	5p15.33	NR	rs1829276-A	0.455	7E-11		0.0128	[0.0089-0.0167] unit decrease	NR [~ 27400000] (imputed)	N
615	chr5	4022649	4022650	rs490556	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	5p15.33	CTD-2287N17.1	rs490556-A	NR	3E-8		0.0171413	[0.011-0.023] unit increase	Affymetrix [323123] (imputed)	N
615	chr5	4024921	4024922	rs11739657	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	5p15.33		rs11739657-A	0.233821189	4E-9		0.09506007	[0.063-0.127] unit decrease	Illumina [13427135] (imputed)	N
615	chr5	4024921	4024922	rs11739657	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	5p15.33	CTD-2383I20.1	rs11739657-A	NR	5E-9		0.0173116	[0.012-0.023] unit increase	Affymetrix [319769] (imputed)	N
615	chr5	4024921	4024922	rs11739657	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	5p15.33	CTD-2383I20.1	rs11739657-A	NR	6E-9		0.0172151	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
615	chr5	4024921	4024922	rs11739657	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	5p15.33	CTD-2383I20.1	rs11739657-A	NR	4E-9		0.0181428	[0.012-0.024] unit decrease	Affymetrix [321788] (imputed)	N
615	chr5	4026279	4026279	rs756895126	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	5p15.33	CTD-2383I20.1	rs756895126-T	NR	2E-12		0.0207084	[0.015-0.026] unit increase	Affymetrix [321788] (imputed)	N
615	chr5	4026279	4026279	rs756895126	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	5p15.33	CTD-2383I20.1	rs756895126-T	NR	7E-10		0.0175093	[0.012-0.023] unit increase	Affymetrix [321016] (imputed)	N
615	chr5	4027323	4027324	rs2459732	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	5p15.33	CTD-2383I20.1	rs2459732-T	NR	8E-17		0.0236425	[0.018-0.029] unit decrease	Affymetrix [319769] (imputed)	N
615	chr5	4027323	4027324	rs2459732	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	5p15.33	CTD-2383I20.1	rs2459732-T	NR	8E-17		0.023654	[0.018-0.029] unit decrease	Affymetrix [319769] (imputed)	N
615	chr5	4027323	4027324	rs2459732	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	5p15.33	NR	rs2459732-T	0.4505	6E-13		0.013	[0.0095-0.0165] unit decrease	NR [~ 27400000] (imputed)	N
615	chr5	4027755	4027756	rs2452877	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA		NR	rs2452877-A	0.56	1E-12		0.013	[0.0095-0.0165] unit increase	Affymetrix [2446094] (imputed)	N
615	chr5	4027755	4027756	rs2452877	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA		NR	rs2452877-A	0.56	5E-8				Affymetrix [2446094] (imputed)	N
615	chr5	4029788	4029789	rs11748327	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	5p15.33	CTD-2383I20.1	rs11748327-T	0.30352	4E-9		0.014115527	[0.0094-0.0188] unit decrease	Affymetrix [93095623] (imputed)	N
615	chr5	4029788	4029789	rs11748327	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	5p15.33		rs11748327-?	NR	1E-11				NR [~ 8900000] (imputed)	N
615	chr5	4029788	4029789	rs11748327	21107343	Aoki A	2010-11-25	J Hum Genet	SNPs on chromosome 5p15.3 associated with myocardial infarction in Japanese population.	Myocardial infarction	194 Japanese ancestry cases, 1,539 Japanese ancestry controls	5,177 Japanese ancestry cases, 6,220 Japanese ancestry controls	5p15.33	intergenic	rs11748327-?	NR	5E-13		1.25	[1.18-1.33]	Perlegen [210785]	N
615	chr5	4031986	4031987	rs11750208	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	5p15.33	NR	rs11750208-T	0.299388	1E-10		0.013135	[0.0091-0.0171] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
615	chr5	4033784	4033785	rs59774773	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (vasodilators used in cardiac diseases)	17,050 East Asian ancestry cases, 161,676 East Asian ancestry controls	NA	5p15.33		rs59774773-C	0.232883614	4E-9		0.08506393	[0.057-0.113] unit decrease	Illumina [13429980] (imputed)	N
615	chr5	4036226	4036227	rs17718387	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	5p15.33	NR	rs17718387-G	0.29952	2E-10		0.012794	[0.0088-0.0167] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
616	chr5	4064370	4064371	rs1911908	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	5p15.33		rs1911908-G	0.302017	1E-9		0.014649386	[0.0099-0.0194] unit decrease	Affymetrix [93095623] (imputed)	N
616	chr5	4080228	4080229	rs2047074	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	5p15.33	CTD-2383I20.1	rs2047074-C	NR	3E-8		0.0172667	[0.011-0.023] unit decrease	Affymetrix [321016] (imputed)	N
616	chr5	4082731	4082732	rs1493463	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	5p15.33	CTD-2383I20.1	rs1493463-A	NR	8E-11		0.0183826	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
616	chr5	4085895	4085896	rs2136174	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	5p15.33	CTD-2383I20.1	rs2136174-T	NR	6E-11		0.018462	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
616	chr5	4093869	4093870	rs10512709	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	5p15.33	CTD-2008N3.1	rs10512709-G	NR	7E-11		0.0192024	[0.013-0.025] unit decrease	Affymetrix [321788] (imputed)	N
616	chr5	4093869	4093870	rs10512709	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	5p15.33	CTD-2008N3.1	rs10512709-G	NR	6E-10		0.0174797	[0.012-0.023] unit decrease	Affymetrix [321016] (imputed)	N
616	chr5	4094164	4094165	rs10041378	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 142,336 Japanese ancestry controls	NA	5p15.33	IRX1, LINC02114	rs10041378-?	NR	6E-9		0.0685211	[0.045-0.092] unit decrease	Illumina [19707525] (imputed)	N
616	chr5	4096021	4096022	rs12188565	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	5p15.33	NR	rs12188565-?	NR	6E-6		0.183363	[0.1-0.26] unit increase	NR [13958389] (imputed)	N
616	chr5	4101156	4101157	rs16872792	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	5p15.33	CTD-2008N3.1	rs16872792-C	NR	7E-9		0.0204644	[0.014-0.027] unit decrease	Affymetrix [321788] (imputed)	N
616	chr5	4101156	4101157	rs16872792	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	5p15.33	CTD-2008N3.1	rs16872792-C	NR	4E-8		0.01867	[0.012-0.025] unit decrease	Affymetrix [321016] (imputed)	N
616	chr5	4101369	4101370	rs1187482	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	5p15.33	CTD-2008N3.1	rs1187482-T	NR	3E-8		0.0173551	[0.011-0.023] unit decrease	Affymetrix [321788] (imputed)	N
616	chr5	4132027	4132028	rs6877530	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	5p15.33	NR	rs6877530-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
616	chr5	4194198	4194199	rs4702522	24569950	Hatemi PK	2014-02-26	Behav Genet	Genetic influences on political ideologies: twin analyses of 19 measures of political ideologies from five democracies and genome-wide findings from three populations.	Political ideology	11,388 European ancestry individuals from 6,758 families	NA	5p15.33	NR	rs4702522-?		6E-6		0.2678	[0.15-0.38] unit decrease	Illumina [> 269840] (imputed)	N
617	chr5	4196494	4196495	rs10043296	24569950	Hatemi PK	2014-02-26	Behav Genet	Genetic influences on political ideologies: twin analyses of 19 measures of political ideologies from five democracies and genome-wide findings from three populations.	Political ideology	11,388 European ancestry individuals from 6,758 families	NA	5p15.33	NR	rs10043296-?		5E-6		0.2778	[0.16-0.40] unit increase	Illumina [> 269840] (imputed)	N
617	chr5	4197671	4197672	rs6555254	24569950	Hatemi PK	2014-02-26	Behav Genet	Genetic influences on political ideologies: twin analyses of 19 measures of political ideologies from five democracies and genome-wide findings from three populations.	Political ideology	11,388 European ancestry individuals from 6,758 families	NA	5p15.33	NR	rs6555254-?		5E-6		0.2798	[0.16-0.40] unit decrease	Illumina [> 269840] (imputed)	N
617	chr5	4197973	4197974	rs10079205	24569950	Hatemi PK	2014-02-26	Behav Genet	Genetic influences on political ideologies: twin analyses of 19 measures of political ideologies from five democracies and genome-wide findings from three populations.	Political ideology	11,388 European ancestry individuals from 6,758 families	NA	5p15.33	NR	rs10079205-?		5E-6		0.2855	[0.16-0.41] unit decrease	Illumina [> 269840] (imputed)	N
617	chr5	4198116	4198117	rs6555259	24569950	Hatemi PK	2014-02-26	Behav Genet	Genetic influences on political ideologies: twin analyses of 19 measures of political ideologies from five democracies and genome-wide findings from three populations.	Political ideology	11,388 European ancestry individuals from 6,758 families	NA	5p15.33	NR	rs6555259-?		5E-6		0.2156	[0.10-0.33] unit decrease	Illumina [> 269840] (imputed)	N
617	chr5	4198373	4198374	rs6555260	24569950	Hatemi PK	2014-02-26	Behav Genet	Genetic influences on political ideologies: twin analyses of 19 measures of political ideologies from five democracies and genome-wide findings from three populations.	Political ideology	11,388 European ancestry individuals from 6,758 families	NA	5p15.33	NR	rs6555260-?		4E-6		0.2931	[0.17-0.42] unit increase	Illumina [> 269840] (imputed)	N
617	chr5	4198435	4198436	rs6555261	24569950	Hatemi PK	2014-02-26	Behav Genet	Genetic influences on political ideologies: twin analyses of 19 measures of political ideologies from five democracies and genome-wide findings from three populations.	Political ideology	11,388 European ancestry individuals from 6,758 families	NA	5p15.33	NR	rs6555261-?		4E-6		0.2207	[0.11-0.34] unit decrease	Illumina [> 269840] (imputed)	N
617	chr5	4198544	4198545	rs6555262	24569950	Hatemi PK	2014-02-26	Behav Genet	Genetic influences on political ideologies: twin analyses of 19 measures of political ideologies from five democracies and genome-wide findings from three populations.	Political ideology	11,388 European ancestry individuals from 6,758 families	NA	5p15.33	NR	rs6555262-?		5E-6		0.2957	[0.17-0.42] unit decrease	Illumina [> 269840] (imputed)	N
617	chr5	4198821	4198822	rs6882308	24569950	Hatemi PK	2014-02-26	Behav Genet	Genetic influences on political ideologies: twin analyses of 19 measures of political ideologies from five democracies and genome-wide findings from three populations.	Political ideology	11,388 European ancestry individuals from 6,758 families	NA	5p15.33	NR	rs6882308-?		4E-6		0.3065	[0.18-0.44] unit decrease	Illumina [> 269840] (imputed)	N
617	chr5	4199755	4199756	rs10036180	24569950	Hatemi PK	2014-02-26	Behav Genet	Genetic influences on political ideologies: twin analyses of 19 measures of political ideologies from five democracies and genome-wide findings from three populations.	Political ideology	11,388 European ancestry individuals from 6,758 families	NA	5p15.33	NR	rs10036180-?		4E-6		0.311	[0.18-0.44] unit increase	Illumina [> 269840] (imputed)	N
617	chr5	4199932	4199933	rs10036225	24569950	Hatemi PK	2014-02-26	Behav Genet	Genetic influences on political ideologies: twin analyses of 19 measures of political ideologies from five democracies and genome-wide findings from three populations.	Political ideology	11,388 European ancestry individuals from 6,758 families	NA	5p15.33	NR	rs10036225-?		4E-6		0.3221	[0.18-0.46] unit decrease	Illumina [> 269840] (imputed)	N
617	chr5	4200603	4200604	rs7712941	24569950	Hatemi PK	2014-02-26	Behav Genet	Genetic influences on political ideologies: twin analyses of 19 measures of political ideologies from five democracies and genome-wide findings from three populations.	Political ideology	11,388 European ancestry individuals from 6,758 families	NA	5p15.33	NR	rs7712941-?		4E-6		0.3221	[0.18-0.46] unit increase	Illumina [> 269840] (imputed)	N
617	chr5	4201143	4201144	rs6894281	24569950	Hatemi PK	2014-02-26	Behav Genet	Genetic influences on political ideologies: twin analyses of 19 measures of political ideologies from five democracies and genome-wide findings from three populations.	Political ideology	11,388 European ancestry individuals from 6,758 families	NA	5p15.33	NR	rs6894281-?		4E-6		0.3277	[0.19-0.47] unit decrease	Illumina [> 269840] (imputed)	N
617	chr5	4201730	4201731	rs6555263	24569950	Hatemi PK	2014-02-26	Behav Genet	Genetic influences on political ideologies: twin analyses of 19 measures of political ideologies from five democracies and genome-wide findings from three populations.	Political ideology	11,388 European ancestry individuals from 6,758 families	NA	5p15.33	NR	rs6555263-?		4E-6		0.3285	[0.19-0.47] unit increase	Illumina [> 269840] (imputed)	N
617	chr5	4201763	4201764	rs6555264	24569950	Hatemi PK	2014-02-26	Behav Genet	Genetic influences on political ideologies: twin analyses of 19 measures of political ideologies from five democracies and genome-wide findings from three populations.	Political ideology	11,388 European ancestry individuals from 6,758 families	NA	5p15.33	NR	rs6555264-?		4E-6		0.3285	[0.19-0.47] unit increase	Illumina [> 269840] (imputed)	N
617	chr5	4269489	4269490	rs458649	28881265	Sobalska-Kwapis M	2017-09-01	Eur J Obstet Gynecol Reprod Biol	New variants near RHOJ and C2, HLA-DRA region and susceptibility to endometriosis in the Polish population-The genome-wide association study.	Endometriosis	171 European ancestry cases, 2,934 European ancestry controls	NA	5p15.33	NR	rs458649-A	0.189	6E-6		1.846	[1.409-2.418]	Illumina [274400]	N
617	chr5	4289169	4289170	rs155349	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Cerebrospinal fluid t-tau levels in normal cognition	305 European ancestry cognitively normal individuals	NA	5p15.33	IRX1, ADAMTS16	rs155349-A	0.24	9E-7		0.44	[0.26-0.62] unit increase	Illumina [8248960] (imputed)	N
617	chr5	4292811	4292812	rs17725170	30320955	Baird DA	2018-10-15	J Bone Miner Res	Identification of novel loci associated with hip shape: a meta-analysis of genome-wide association studies.	Hip shape (DXA scan)	10,217 European ancestry individuals, 5,717 individuals	NA	5p15.33	IRX1, ADAMTS16	rs17725170-A	0.25	6E-9	(hip shape mode 2)	0.079	[0.046-0.112] unit decrease	Illumina [7191926] (imputed)	N
618	chr5	4327852	4327853	rs261179	30888730	Hsu YH	2019-03-19	J Bone Miner Res	Meta-Analysis of Genomewide Association Studies Reveals Genetic Variants for Hip Bone Geometry.	Femoral neck length	18,719 individuals	8,334 individuals	5p15.33	IRX1, ADAMTS16	rs261179-?		2E-8		5.582	NR z score increase	Affymetrix, Illumina [up to 2622085] (imputed)	N
618	chr5	4405129	4405130	rs62346668	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	5p15.32	intergenic	rs62346668-T	0.0518369912066505	3E-6	(G_Odoribacter_HB)	0.833815	[0.48-1.18] unit decrease	Illumina [7711310] (imputed)	N
618	chr5	4439259	4439260	rs10064177	28334935	Raffield LM	2017-05-15	Hum Mol Genet	Genome-wide association study of iron traits and relation to diabetes in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL): potential genomic intersection of iron and glucose regulation?	Iron status biomarkers (ferritin levels)	12,375 Hispanic/Latino individuals	NA	5p15.32	IRX1, LOC101929153	rs10064177-G	NR	9E-8		0.024	[0.014-0.034] unit decrease	Illumina [27700000] (imputed)	N
619	chr5	4474588	4474589	rs1433265	29934777	Witten A	2018-06-22	J Mol Med (Berl)	Targeted resequencing of a locus for heparin-induced thrombocytopenia on chromosome 5 identified in a genome-wide association study.	Heparin-induced thrombocytopenia	96 European ancestry cases, 96 European ancestry heparin-exposed controls	86 European ancestry cases, 86 European ancestry heparin-exposed controls		IRX1, AC106799.2, ADAMTS16	rs1433265-?	0.29	3E-8		2.77	[1.9-4.0]	Illumina [~ 351507]	N
619	chr5	4488244	4488245	rs10462794	23725790	Renteria ME	2013-06-03	Twin Res Hum Genet	GWAS of DNA methylation variation within imprinting control regions suggests parent-of-origin association.	DNA methylation (variation)	256 European ancestry individuals	384 European ancestry individuals	5p15.32	RP11-44503.2	rs10462794-C	0.24	5E-6	(IGF2-DMR)			Illumina [515966]	N
619	chr5	4507314	4507315	rs13359994	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5p15.32	NR	rs13359994-A	0.01568	2E-8	(MTHFS)	0.04339	NR unit decrease	Illumina [1671387] (imputed)	N
619	chr5	4515771	4515772	rs921390	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		5p15.32	Intergenic	rs921390-T	0.005	1E-6	(liability model)	0.58	[0.34-0.82] unit increase	NR [19725427] (imputed)	N
619	chr5	4545555	4545556	rs1993045	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	5p15.32		rs1993045-A	NR	6E-9		0.0273	[0.018-0.037] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
619	chr5	4574260	4574261	rs13161529	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5p15.32	KIAA0947	rs13161529-?	NR	4E-6	(TAG 58:7)	0.26256806	[0.15-0.37] unit decrease	Affymetrix [at least 2500000] (imputed)	N
619	chr5	4577967	4577968	rs1864216	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	5p15.32		rs1864216-?	NR	1E-8				NR [~ 8900000] (imputed)	N
619	chr5	4579146	4579147	rs62342400	29855589	Chernus J	2018-05-31	Sci Rep	GWAS reveals loci associated with velopharyngeal dysfunction.	Velopharyngeal dysfunction	54 Hispanic or Latin American and unknown ancestry cases, 922 Hispanic or Latin American and unknown ancestry controls	NA	5p15.32	NR	rs62342400-?	NR	2E-6		0.101659134	[NR] unit decrease	Illumina [at least 269494] (imputed)	N
619	chr5	4585547	4585548	rs10057787	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	5p15.32	NR	rs10057787-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
620	chr5	4662520	4662521	rs891193	32009195	Condreay LD	2020-02-03	Rheumatol Int	Pharmacogenetic investigation of efficacy response to mepolizumab in eosinophilic granulomatosis with polyangiitis.	Accrued duration of remission in mepolizumab-treated eosinophilic granulomatosis with polyangiitis	61 individuals	NA	5p15.32	NR	rs891193-?	NR	6E-6		0.8882	[0.54-1.24] unit increase	Affymetrix [7154205] (imputed)	N
620	chr5	4699440	4699441	rs62343939	33111402	Tan MMX	2020-10-28	Mov Disord	Genome-Wide Association Studies of Cognitive and Motor Progression in Parkinson's Disease.	Parkinson's disease progression (composite)	2,755 individuals	NA	5p15.32	ADAMTS16	rs62343939-T	0.05	3E-6		0.43	[0.25-0.61] unit increase	Illumina [5918868] (imputed)	N
621	chr5	4720584	4720585	rs7727102	20889312	Wang KS	2010-10-01	Schizophr Res	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	5p15.32	NR	rs7727102-?	NR	1E-6		1.3053	[NR]	Affymetrix [722112]	N
621	chr5	4741986	4741987	rs73048515	30566433	Taira M	2018-12-19	PLoS One	A variant within the FTO confers susceptibility to diabetic nephropathy in Japanese patients with type 2 diabetes.	Type 2 diabetes nephropathy including microalbuminuria	at least 2,809 Japanese ancestry cases, 5,592 Japanese ancestry controls	at least 2,115 Japanese ancestry cases, 2,519 Japanese ancestry controls	5p15.32	LOC107986400	rs73048515-C	NR	5E-7		1.52	[1.28-1.79]	Illumina [NR]	N
621	chr5	4814366	4814380	rs779665853	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	5p15.32	RP11-445O3.2	rs779665853-CTCTCTCTCTCTCTG	0.9948	5E-6		1.2749	[0.73-1.82] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
621	chr5	4815043	4815044	rs1185359	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	5p15.32	RP11-445O3.2	rs1185359-C	NR	6E-6	(mid-sleep time, weekdays)	0.277	[0.16-0.4] unit increase	Affymetrix [7141204] (imputed)	N
621	chr5	4831600	4831601	rs816475	23534349	Jeff JM	2013-03-28	Ann Hum Genet	Generalization of variants identified by genome-wide association studies for electrocardiographic traits in African Americans.	Heart rate	455 African American individuals	NA	5p15.32	intergenic	rs816475-T		3E-6		3.69	[NR] ms increase	Illumina [> 930000]	N
622	chr5	4867912	4867913	rs707645	30319691	Liu C	2018-09-24	Front Genet	Genome-Wide Association and Mechanistic Studies Indicate That Immune Response Contributes to Alzheimer's Disease Development.	Cognitive impairment test score	235 early mild cognitive impairment cases, 249 late mild cognitive impairment cases, 47 Alzheimer's disease cases, 281 controls.	NA	5p15.32	Intergenic	rs707645-?		8E-7		2.908621	[NR] unit increase	Illumina [575353]	N
622	chr5	4868672	4868674	rs56992090	32469969	Pott J	2020-05-29	PLoS One	Genome-wide analysis of carotid plaque burden suggests a role of IL5 in men.	Sum of stenosis	727 European ancestry men, 550 European ancestry women	NA	5p15.32	NR	rs56992090-A	0.0878997	9E-7	(men)	0.426574	[0.26-0.6] % decrease	Affymetrix [532676] (imputed)	N
622	chr5	4868672	4868674	rs56992090	32469969	Pott J	2020-05-29	PLoS One	Genome-wide analysis of carotid plaque burden suggests a role of IL5 in men.	Maximum stenosis	727 European ancestry men, 550 European ancestry women	NA	5p15.32	NR	rs56992090-A	0.0878997	2E-6	(men)	0.29635	[0.18-0.42] % decrease	Affymetrix [532676] (imputed)	N
622	chr5	4902914	4902915	rs26877	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	5p15.32	ADAMTS16	rs26877-T	NR	6E-6	(mid-sleep time)	0.2569	[0.15-0.37] unit increase	Affymetrix [7141204] (imputed)	N
623	chr5	4985442	4985443	rs7712113	27927641	Ombrello MJ	2016-12-07	Ann Rheum Dis	Genetic architecture distinguishes systemic juvenile idiopathic arthritis from other forms of juvenile idiopathic arthritis: clinical and therapeutic implications.	Systemic juvenile idiopathic arthritis	178 European ancestry cases, 434 European ancestry controls, 81 Hispanic/Latin American cases, 177 Hispanic/Latin American controls, 511 cases, 6,336 controls	NA	5p15.32	LINC01020, LOC101929176	rs7712113-?		5E-6	(Dominant)	3.7	[2.1-6.5]	Illumina [5600610] (imputed)	N
623	chr5	5074824	5074825	rs270636	29785011	Zhu Z	2018-05-21	Nat Genet	A genome-wide cross-trait analysis from UK Biobank highlights the shared genetic architecture of asthma and allergic diseases.	Asthma or allergic disease (pleiotropy)	14,085 European asthma cases, 25,685 European ancestry allergic diseases cases, 76,768 European ancestry controls	NA	5p15.32	IL13, RAD50	rs270636-?	NR	4E-11		1.06		NR [74888535] (imputed)	N
624	chr5	5133174	5133175	rs138348129	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		AC022424.1	rs138348129-?	NR	1E-9		3.52932	[NR] unit decrease	Affymetrix [NR] (imputed)	N
624	chr5	5133174	5133175	rs138348129	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		AC022424.1	rs138348129-?	NR	1E-8	(male)	3.11926	[NR] unit decrease	Affymetrix [NR] (imputed)	N
624	chr5	5167647	5167648	rs997428	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Bifidobacterium)	1,068 Japanese ancestry individuals	NA	5p15.32	ADAMTS16, CTD-2297D10.1	rs997428-C	0.14	8E-7	(female)	0.263	[0.16-0.37] unit decrease	Illumina [6380737] (imputed)	N
624	chr5	5169589	5169590	rs12658731	30557369	Yodsurang V	2018-12-17	PLoS One	Genome-wide association study (GWAS) of ovarian cancer in Japanese predicted regulatory variants in 22q13.1.	Ovarian cancer	681 Japanese ancestry cases, 17,492 Japanese ancestry controls	NA	5p15.32	ADAMTS16	rs12658731-G	0.6438	9E-7		1.405	[1.227-1.608]	Illumina [7521072] (imputed)	N
624	chr5	5174867	5174868	rs1366161	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Ovarian cancer (MTAG)	647 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	5p15.32	Intergenic	rs1366161-?		3E-6		1.0309278	[1.02-1.05]	Illumina [7645193] (imputed)	N
624	chr5	5174867	5174868	rs1366161	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Ovarian cancer	647 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	5p15.32	Intergenic	rs1366161-?		6E-6		1.2987013	[1.16-1.45]	Illumina [7645193] (imputed)	N
624	chr5	5181438	5181439	rs16874918	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5p15.32	KIAA0947	rs16874918-?	NR	9E-6	(LPE 18:0)	0.90391344	[0.5-1.3] unit increase	Affymetrix [at least 2500000] (imputed)	N
624	chr5	5183408	5183409	rs10040074	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Non-word reading	3,409 European ancestry individuals	NA	5p15.32	CTD-2297D10.1	rs10040074-G	0.885964571	3E-6		0.236553	[0.14-0.34] unit decrease	Illumina [6969139] (imputed)	N
624	chr5	5192860	5192861	rs871122	31888951	Schlauch KA	2019-12-30	G3 (Bethesda)	A Comprehensive Genome-Wide and Phenome-Wide Examination of BMI and Obesity in a Northern Nevadan Cohort.	Body mass index	5,994 non-diabetic individuals	NA	5p15.32	ADAMTS16	rs871122-T	0.1661	8E-6		0.6837	[0.38-0.98] unit increase	Illumina [500508]	N
624	chr5	5224691	5224692	rs2913614	33987465	Alfradique-Dunham I	2021-01-28	Neurol Genet	Genome-Wide Association Study Meta-Analysis for Parkinson Disease Motor Subtypes.	Parkinson's disease motor subtype (tremor to postural instability/gait difficulty score ratio)	3,212 European ancestry individuals	NA	5p15.32	ADAMTS16	rs2913614-A	0.54	6E-6		0.15	[0.091-0.209] unit increase	Illumina [14638245] (imputed)	N
625	chr5	5260682	5260683	rs7704641	25524241	Richter HE	2014-12-15	J Urol	Genetic contributions to urgency urinary incontinence in women.	Urgency urinary incontinence	1,102 European ancestry cases, 405 European ancestry controls	1,133 European ancestry cases, 371 European ancestry controls	5p15.32	ADAMTS16	rs7704641-?	NR	2E-7		1.37	[1.22-1.54]	Illumina [9077347] (imputed)	N
625	chr5	5297199	5297200	rs16875288	24039173	McGrath LM	2013-09-13	Am J Med Genet B Neuropsychiatr Genet	Genetic predictors of risk and resilience in psychiatric disorders: a cross-disorder genome-wide association study of functional impairment in major depressive disorder, bipolar disorder, and schizophrenia.	Functional impairment in major depressive disorder, bipolar disorder and schizophrenia	2,246 European ancestry individuals	NA	5p15.32	ADAMTS16	rs16875288-?	NR	6E-8	(PCS)			Affymetrix [1633452] (imputed)	N
625	chr5	5304603	5304604	rs72726039	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		ADAMTS16	rs72726039-?	NR	4E-8	(female)	1.41385	[NR] unit decrease	Affymetrix [NR] (imputed)	N
626	chr5	5407813	5407814	rs2964475	23648065	Low SK	2013-05-04	Cancer Sci	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (epirubicin)	83 Japanese ancestry cases, 370 Japanese ancestry controls	NA	5p15.32	KIAA0947	rs2964475-C	0.415	4E-6	(Allelic model)	2.248	[1.592-3.174]	Illumina [733202]	N
626	chr5	5473062	5473063	rs2578557	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	5p15.32	ICE1	rs2578557-T	0.6417	2E-12		0.0138	[0.0099-0.0177] unit decrease	Affymetrix [18391927] (imputed)	N
627	chr5	5511394	5511395	rs77219037	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip	15 Asian ancestry cases, 13 European ancestry cases, 15 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	5p15.32	NR	rs77219037-?	NR	7E-7		4.45	[3.5-5.67]	Illumina [539000] (imputed)	N
628	chr5	5689217	5689218	rs10512804	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Ruminococcus belonging to family Erysipelotrichaceae)	1,068 Japanese ancestry individuals	NA	5p15.32	intergenic	rs10512804-C	0.10	8E-6	(male)	0.455	[0.26-0.65] unit increase	Illumina [6380737] (imputed)	N
628	chr5	5689217	5689218	rs10512804	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Ruminococcus belonging to family Erysipelotrichaceae)	1,068 Japanese ancestry individuals	NA	5p15.32	intergenic	rs10512804-C	0.10	1E-6		0.343	[0.21-0.48] unit increase	Illumina [6380737] (imputed)	N
629	chr5	5786701	5786702	rs187632	29532581	Hallfors J	2018-03-13	Addict Biol	Genome-wide association study in Finnish twins highlights the connection between nicotine addiction and neurotrophin signaling pathway.	Nicotine dependence	873 Finnish ancestry cases and 842 Finnish ancestry controls from 739 families	NA	5p15.32	NR	rs187632-A	0.4621	7E-7		0.08813937	[0.05-0.12] unit decrease	Illumina [9469131] (imputed)	N
629	chr5	5792506	5792507	rs32566	17903295	Lunetta KL	2007-09-19	BMC Med Genet	Genetic correlates of longevity and selected age-related phenotypes: a genome-wide association study in the Framingham Study.	Morbidity-free survival	558 individuals	NA	5p15.32	intergenic	rs32566-?	NR	2E-9				Affymetrix [70897]	N
629	chr5	5812064	5812065	rs2560471	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (PANSS score)	1,390 European ancestry individuals	NA	5p15.32		rs2560471-A	NR	8E-6	(GLM)	5.8753	[NR] unit increase	Illumina [~ 9000000] (imputed)	N
629	chr5	5812064	5812065	rs2560471	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (CGI-S score)	1,390 European ancestry cases	NA	5p15.32		rs2560471-A	NR	5E-6	(GLM)	0.3525	[NR] unit increase	Illumina [~ 9000000] (imputed)	N
629	chr5	5822646	5822647	rs3852160	24376456	Simino J	2013-12-12	Front Genet	Gene-alcohol interactions identify several novel blood pressure loci including a promising locus near SLC16A9.	Mean arterial pressure (alcohol consumption interaction)	up to 6,882 individuals	NA	5p15.32	intergenic	rs3852160-C	0.39	2E-6	(Days drinks/week)	0.526	[0.34-0.71] unit increase	Affymetrix [2500000] (imputed)	N
629	chr5	5897693	5897694	rs7728043	20031603	Marroni F	2009-08-01	Circ Cardiovasc Genet	A genome-wide association scan of RR and QT interval duration in 3 European genetically isolated populations: the EUROSPAN project.	QT interval	2,325 European ancestry individuals	NA	5p15.32	intergenic	rs7728043-G	0.48	1E-6		0.14	[0.08-0.20] unit decrease	Illumina [~ 318327]	N
631	chr5	6113554	6113555	rs13171478	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	5p15.32	AC026797.1	rs13171478-T	0.002	2E-6		0.4496	[0.26-0.63] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
633	chr5	6292455	6292456	rs11743956	28322283	Chibnik LB	2017-03-21	Mol Psychiatry	Susceptibility to neurofibrillary tangles: role of the PTPRD locus and limited pleiotropy with other neuropathologies.	Neurofibrillary tangles	909 European ancestry individuals	369 individuals	5p15.32	NR	rs11743956-C	0.91	6E-6	(EA)	0.2	[0.11-0.28] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
633	chr5	6324292	6324293	rs12518614	23381943	Williams FM	2013-01-01	Ann Neurol	Ischemic stroke is associated with the ABO locus: the EuroCLOT study.	End-stage coagulation	2,100 European ancestry individuals	NA	5p15.31	FLJ33360	rs12518614-A	0.954	2E-9	(vWF)	0.463	[0.31-0.61] unit decrease	Illumina [NR] (imputed)	N
633	chr5	6353814	6353815	rs10040610	25866641	Xu W	2015-03-19	Biomark Res	A genome wide association study on Newfoundland colorectal cancer patients' survival outcomes.	Survival in microsatellite instability low/stable colorectal cancer	431 European ancestry cases	NA	5p15.31	intergenic	rs10040610-?		8E-6	(overall survival)	1.96	[1.46-2.63]	Illumina [729737]	N
633	chr5	6396582	6396583	rs10475324	29738550	de Oliveira Otto MC	2018-05-08	PLoS One	Genome-wide association meta-analysis of circulating odd-numbered chain saturated fatty acids: Results from the CHARGE Consortium.	Circulating odd-numbered chain saturated fatty acid levels (C15:0+C17:0)	6,016 European ancestry individuals	NA	5p15.31	NR	rs10475324-?	NR	3E-6		0.1029	[0.06-0.146] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
633	chr5	6407128	6407129	rs16877275	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H measurement	252 European ancestry individuals	NA	5p15.31		rs16877275-C	NR	9E-6		2.0453	[1.16-2.93] unit decrease	Illumina [NR] (imputed)	N
635	chr5	6593458	6593459	rs11953990	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	5p15.31	NR	rs11953990-?	NR	1E-8				Illumina [7760689] (imputed)	N
635	chr5	6595738	6595739	rs147915487	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	5p15.31	NSUN2	rs147915487-T	0.0066	2E-6		0.3224	[0.19-0.45] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
635	chr5	6599221	6599222	rs6876835	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral fat	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	5p15.31	SRD5A1, NSUN2	rs6876835-A	0.58	3E-6	(men)			Affymetrix, Illumina [2500000] (imputed)	N
635	chr5	6610390	6610391	rs7717596	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	5p15.31		rs7717596-?	NR	4E-8				NR [~ 8900000] (imputed)	N
635	chr5	6635590	6635591	rs472402	22952603	Hart AB	2012-08-28	PLoS One	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 10 individuals	NA	5p15.31	SRD5A1	rs472402-?	NR	3E-7	(SF2)			Affymetrix [5476100] (imputed)	N
636	chr5	6704550	6704551	rs35768130	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5p15.31		rs35768130-?	NR	1E-17				NR [~ 8900000] (imputed)	N
636	chr5	6711629	6711630	rs274668	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	5p15.31		rs274668-T	NR	3E-17		0.0114	[0.0089-0.0139] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
636	chr5	6712833	6712834	rs34681760	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	5p15.31	LOC100505625	rs34681760-C	NR	2E-11		1.0819	NR	Affymetrix, Illumina [8278136] (imputed)	N
636	chr5	6731412	6731413	rs11951576	19838195	Gateva V	2009-11-01	Nat Genet	A large-scale replication study identifies TNIP1, PRDM1, JAZF1, UHRF1BP1 and IL10 as risk loci for systemic lupus erythematosus.	Systemic lupus erythematosus	1,310 European ancestry cases, 7,859 European ancestry controls	1,963 European ancestry cases, 4,329 European ancestry controls	5p15.31	POLS, SRD5A	rs11951576-C	0.69	5E-6		1.14	[1.08-1.22]	Illumina [~ 2100000] (imputed)	N
636	chr5	6734244	6734245	rs395939	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	5p15.31		rs395939-?	NR	1E-7				NR [~ 8900000] (imputed)	N
636	chr5	6736586	6736587	rs169285	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Age at menopause	approximately 143,000 European ancestry individuals	NA	5p15.31		rs169285-?	NR	1E-14				NR [~ 8900000] (imputed)	N
636	chr5	6745874	6745875	rs427394	26414677	Day FR	2015-11-01	Nat Genet	Large-scale genomic analyses link reproductive aging to hypothalamic signaling, breast cancer susceptibility and BRCA1-mediated DNA repair.	Menopause (age at onset)	up to 69,626 European ancestry women	NA	5p15.31	PAPD7	rs427394-G	0.41	4E-9		0.13	[0.091-0.169] years decrease	Affymetrix, Illumina [~ 2600000] (imputed)	N
636	chr5	6753727	6753728	rs4389656	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	5p15.31	PAPD7	rs4389656-A	0.3092	1E-6		0.0328	[0.02-0.046] unit decrease	NR [8041861] (imputed)	N
636	chr5	6754401	6754402	rs274677	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	5p15.31		rs274677-C	NR	4E-10		0.0108	[0.0075-0.0141] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
636	chr5	6767311	6767312	rs12520016	23548203	Zhang M	2013-04-01	Hum Mol Genet	Genome-wide association studies identify several new loci associated with pigmentation traits and skin cancer risk in European Americans.	Eye color	3871 European ancestry individuals	2,496 European ancestry individuals	5p15.31	POLS	rs12520016-G	NR	9E-7	(Intermediate/Green eye color)	0.42	[0.26-0.58] unit increase	Affymetrix, Illumina [2469762] (imputed)	N
636	chr5	6784194	6784195	rs77569618	31371054	Ruddy KJ	2019-07-29	Fertil Steril	Genetic predictors of chemotherapy-related amenorrhea in women with breast cancer.	Adverse response to chemotherapy (amenorrhea) in breast cancer	457 European ancestry amenorrheic cases, 711 European ancestry post-chemotherapy menses cases	NA	5p15.31	PAPD7	rs77569618-A	0.09	1E-6		1.48	[NR]	Illumina [5430816] (imputed)	N
636	chr5	6813936	6813937	rs275456	23776197	Leandro-Garcia LJ	2013-06-17	J Med Genet	Genome-wide association study identifies ephrin type A receptors implicated in paclitaxel induced peripheral sensory neuropathy.	Paclitaxel-induced neuropathy	143 European ancestry individuals		5p15.31	PAPD7	rs275456-A	0.24	3E-6		2.26	[1.60-3.18]	Illumina [518577]	N
637	chr5	6821913	6821914	rs1566039	22359512	Demirkan A	2012-02-16	PLoS Genet	Genome-wide association study identifies novel loci associated with circulating phospho- and sphingolipid concentrations.	Sphingolipid levels	4,034 European ancestry individuals	NA	5p15.31	PAPD7	rs1566039-?	NR	1E-8	(levels)	0.8	[NR] % increase	Illumina [NR] (imputed)	N
637	chr5	6823920	6823921	rs12187623	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5p15.31	NR	rs12187623-G	0.01916	1E-8	(SERPINA3)	0.1866	NR unit increase	Illumina [1671387] (imputed)	N
637	chr5	6834166	6834167	rs11134178	18821564	Mick E	2008-09-26	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of response to methylphenidate in 187 children with attention-deficit/hyperactivity disorder.	Attention deficit hyperactivity disorder	105 European ancestry cases, 34 Hispanic cases, 26 African American cases, 22 cases	NA	5p15.31	intergenic	rs11134178-T	0.05	3E-6				Affymetrix [319722]	N
637	chr5	6879977	6879978	rs275437	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	5p15.31	intergenic	rs275437-A	0.494	3E-6	(TC )	0.04	[NR] mg/dL increase	Illumina [899892]	N
637	chr5	6900465	6900466	rs2894967	30713548	Schurz H	2019-01-18	Front Genet	A Sex-Stratified Genome-Wide Association Study of Tuberculosis Using a Multi-Ethnic Genotyping Array.	Tuberculosis	242 South African admixed female cases, 168 South African admixed male cases, 223 South African admixed female controls, 182 South African admixed male controls	NA	5p15.31	TENT4A	rs2894967-C	NR	5E-6	(Female)	2.173	[1.56-2.90]	Illumina [848325]	N
637	chr5	6902714	6902715	rs13164333	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	6,647 African American individuals	NA	5p15.31	MIR4278	rs13164333-C	0.1442	1E-8		0.0687	[0.046-0.092] unit increase	Affymetrix, Illumina [26614666] (imputed)	N
637	chr5	6937181	6937182	rs10036128	31201950	Lutz MW	2019-03-06	Neurobiol Aging	Analysis of pleiotropic genetic effects on cognitive impairment, systemic inflammation, and plasma lipids in the Health and Retirement Study.	C-reactive protein levels	6,545 European ancestry individuals	NA	5p15.31		rs10036128-C	0.09	9E-7		0.61	[0.36-0.85] unit increase	Illumina [19468843] (imputed)	N
639	chr5	7085206	7085207	rs148995025	30487263	Pollack S	2018-11-28	Diabetes	Multiethnic Genome-wide Association Study of Diabetic Retinopathy using Liability Threshold Modeling of Duration of Diabetes and Glycemic Control.	Diabetic retinopathy (moderate NPDR and PDR)	644 European ancestry cases, 1,970 European ancestry controls, 768 African American cases, 941 African American controls	2,388 East Asian ancestry cases, 6,219 East Asian ancestry controls, 1,658 European ancestry cases, 3,019 European ancestry controls, 1,014 Hispanic cases, 1,240 Hispanic controls	5p15.31	NR	rs148995025-?	NR	6E-7	(AA)	3.41	[NR]	Affymetrix, Illumina [NR] (imputed)	N
639	chr5	7155611	7155612	rs4702435	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	5p15.31	LOC442132	rs4702435-G	0.118	5E-6	(Dinner intake, adj EER )	0.04	[NR] kcal increase	Illumina [899892]	N
639	chr5	7185796	7185797	rs76186988	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	5p15.31	NR	rs76186988-?	NR	6E-6		0.1195	[0.068-0.171] unit decrease	Illumina [at least 560000] (imputed)	N
639	chr5	7196439	7196440	rs186953828	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	5p15.31	Intergenic	rs186953828-A	0.729	5E-6	(AA)	0.018	unit decrease	Illumina [NR] (imputed)	N
640	chr5	7214039	7214040	rs7449161	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	5p15.31		rs7449161-T	0.5226	2E-9		0.013	[0.0091-0.0169] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
640	chr5	7228046	7228047	rs7729273	35215271	Almandil NB	2022-01-27	Pharmaceuticals (Basel)	Integration of Transcriptome and Exome Genotyping Identifies Significant Variants with Autism Spectrum Disorder.	Autism spectrum disorder	70 Arab ancestry cases, 132 Arab ancestry controls	NA	5p15.31	NA	rs7729273-T	0.0454	5E-6		5.765	[2.53-13.13]	Illumina [243345]	N
640	chr5	7228046	7228047	rs7729273	19734545	Need AC	2009-09-04	Hum Mol Genet	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA	5p15.31	AC091951.3	rs7729273-?	0.1985	1E-6	(SSP)			Illumina [475971]	N
640	chr5	7243980	7243981	rs4537030	24376456	Simino J	2013-12-12	Front Genet	Gene-alcohol interactions identify several novel blood pressure loci including a promising locus near SLC16A9.	Mean arterial pressure (alcohol consumption interaction)	up to 6,882 individuals	NA	5p15.31	ADCY2	rs4537030-G	0.38	7E-7	(drinks/week)	0.087	[0.046-0.128] unit decrease	Affymetrix [2500000] (imputed)	N
640	chr5	7249695	7249696	rs12518468	30846698	Dashti HS	2019-03-07	Nat Commun	Genome-wide association study identifies genetic loci for self-reported habitual sleep duration supported by accelerometer-derived estimates.	Sleep duration (short sleep)	106,192  European ancestry cases, 305,742 European ancestry controls	47,180  adults, 10,554 children or adolescents	5p15.31	POLS, LOC100130063	rs12518468-C	NR	9E-9		1.032		NR [14661600] (imputed)	N
640	chr5	7250121	7250122	rs9313182	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference	1,254 whole genome sequenced European ancestry individuals, 3,074 whole genome sequenced individuals, 29,716 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 701 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,050 Mylopotamos (founder/genetic isolate) individuals, 883 Pomak (founder/genetic isolate) individuals	205,909 European ancestry individuals	5p15.31	RP11-404K5.3	rs9313182-C	0.1015	1E-6		0.0727	[0.043-0.102] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
640	chr5	7259852	7259853	rs12513440	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	5p15.31	NR	rs12513440-A	0.250254328177541	2E-8		0.0059425323	[0.0039-0.008] unit increase	NR [NR]	N
640	chr5	7259852	7259853	rs12513440	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	5p15.31	NR	rs12513440-A	0.250254328177541	3E-8		0.0071901027	[0.0046-0.0097] unit increase	NR [NR]	N
640	chr5	7259852	7259853	rs12513440	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	5p15.31	NR	rs12513440-A	0.250254328177541	3E-8		0.009365995	[0.0061-0.0127] unit increase	NR [NR]	N
640	chr5	7259852	7259853	rs12513440	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	5p15.31	NR	rs12513440-A	0.250254328177541	3E-8		0.005975361	[0.0039-0.0081] unit increase	NR [NR]	N
640	chr5	7290683	7290683	rs57380813	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	5p15.31	NR	rs57380813-AG	0.7003	8E-6	(EA)	0.0313	[0.018-0.045] unit increase	Illumina [~ 11800000] (imputed)	N
640	chr5	7296722	7296723	rs147346874	27106561	Cornelis MC	2016-04-23	Obesity (Silver Spring)	A genome-wide investigation of food addiction.	Food addiction	up to 9,314 European ancestry individuals	NA	5p15.31	ADCY2	rs147346874-G	0.15	6E-7	(mYscore, binary)	1.6393442		Affymetrix, Illumina [~ 31000000] (imputed)	N
640	chr5	7301373	7301374	rs62341806	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Subjective well-being	298,420 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	5p15.31	NR	rs62341806-T	0.5255	7E-7		0.014930834	[0.009-0.0208] unit increase	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
640	chr5	7306147	7306148	rs116604819	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Cerebral white matter volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	5p15.31	LOC442132	rs116604819-?		4E-6				Illumina [4322238] (imputed)	N
641	chr5	7360018	7360019	rs80054548	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	5p15.31	Intergenic	rs80054548-G	0.8508	4E-12		0.019	[0.014-0.024] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
641	chr5	7364366	7364367	rs11134225	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	5p15.31	NR	rs11134225-?	NR	1E-6				Affymetrix [NR]	N
641	chr5	7368844	7368845	rs13172324	23049088	Meng W	2012-10-09	Invest Ophthalmol Vis Sci	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		5p15.31	intergenic	rs13172324-?	0.093	3E-10			[NR]	Affymetrix, Illumina [152234]	N
641	chr5	7377210	7377211	rs35510613	30070759	Olsson M	2018-08-02	J Thromb Haemost	Genome-wide analysis of genetic determinants of circulating factor VII activating protease (FSAP) activity.	Plasma factor VII activating protease levels	3,126 Swedish ancestry individuals	NA	5p15.31	ADCY2	rs35510613-?		1E-8		45.3	[29.82-60.78] unit decrease	Illumina [~ 10000000] (imputed)	N
641	chr5	7378853	7378854	rs2220599	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (computer use)	408,815 European ancestry individuals	NA	5p15.31	NR	rs2220599-?		2E-12		0.0160514	[0.012-0.021] unit decrease	Affymetrix [19400418] (imputed)	N
641	chr5	7378853	7378854	rs2220599	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Subjective well-being	388,538 European ancestry individuals	NA	5p15.31	NR	rs2220599-C	0.6282	2E-8		0.0132	[0.0087-0.0177] unit increase	Illumina [NR] (imputed)	N
641	chr5	7378894	7378895	rs993884	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Subjective well-being (MTAG)	388,538 European ancestry individuals	NA	5p15.31	NR	rs993884-C	0.3717	3E-9		0.0114	[0.0077-0.0151] unit decrease	Illumina [NR] (imputed)	N
641	chr5	7379002	7379003	rs993885	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Coffee consumption	335,909 European ancestry individuals	39,924 European ancestry individuals	5p15.31	ADCY2	rs993885-G	0.6326	2E-9		0.0092	[0.0063-0.0121] unit increase	Affymetrix [~ 7740000] (imputed)	N
641	chr5	7391461	7391462	rs12514566	33287642	Said MA	2020-12-08	J Am Heart Assoc	Associations of Observational and Genetically Determined Caffeine Intake With Coronary Artery Disease and Diabetes Mellitus.	Caffeine consumption from coffee or tea	362,316 European ancestry individuals	NA	5p15.31	ADCY2, PCMTD2	rs12514566-G	0.664698	2E-12		0.017242	[0.012-0.022] unit increase	Affymetrix [19400838] (imputed)	N
641	chr5	7391461	7391462	rs12514566	33287642	Said MA	2020-12-08	J Am Heart Assoc	Associations of Observational and Genetically Determined Caffeine Intake With Coronary Artery Disease and Diabetes Mellitus.	Caffeine consumption from coffee	373,522 European ancestry individuals	NA	5p15.31	ADCY2	rs12514566-G	0.664625	1E-9		0.014831	[0.01-0.02] unit increase	Affymetrix [19400838] (imputed)	N
641	chr5	7392932	7392933	rs12515392	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	5p15.31	Intergenic	rs12515392-A	0.2077	4E-10	(MTAG)	0.0101	[0.007-0.0132] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
641	chr5	7413310	7413311	rs114980514	26423011	Wain LV	2015-09-27	Lancet Respir Med	Novel insights into the genetics of smoking behaviour, lung function, and chronic obstructive pulmonary disease (UK BiLEVE): a genetic association study in UK Biobank.	Smoking status (heavy vs never)	24,457 European ancestry heavy smokers, 24,474 European ancestry never smokers	NA	5p15.31	ADCY2	rs114980514-A	0.01	4E-7		1.414	[1.237-1.617]	Affymetrix [28509962] (imputed)	N
641	chr5	7418681	7418682	rs78765360	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	5p15.31	Intergenic	rs78765360-T	0.2066	2E-14	(MTAG)	0.017	[0.013-0.021] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
641	chr5	7418681	7418682	rs78765360	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	5p15.31	Intergenic	rs78765360-T	0.2063	2E-14	(MTAG)	0.0155	[0.012-0.019] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
641	chr5	7418681	7418682	rs78765360	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	5p15.31	Intergenic	rs78765360-T	0.2056	1E-9	(MTAG)	0.0172	[0.012-0.023] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
641	chr5	7440085	7440086	rs76122614	27749845	Lesseur C	2016-10-17	Nat Genet	Genome-wide association analyses identify new susceptibility loci for oral cavity and pharyngeal cancer.	Oropharynx cancer	2,506 European ancestry cases, 135 cases, 5,984 European ancestry controls, 601 controls	NA	5p15.31	ADCY2	rs76122614-G	0.740588266296706	4E-6		1.206127		Illumina [7574753] (imputed)	N
641	chr5	7448795	7448796	rs2451828	31116379	Meier SM	2019-05-22	JAMA Psychiatry	Genetic Variants Associated With Anxiety and Stress-Related Disorders: A Genome-Wide Association Study and Mouse-Model Study.	Anxiety and stress-related disorders	12,655 European ancestry cases, 19,225 European ancestry controls	NA	5p15.31	ADCY2	rs2451828-T	NR	7E-7		1.34	[1.193-1.505]	Illumina [8933939] (imputed)	N
641	chr5	7465440	7465441	rs530573459	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	5p15.31		rs530573459-T	NR	4E-8		0.2429	[0.16-0.33] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
641	chr5	7465440	7465441	rs530573459	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	150,266 East Asian ancestry individuals	NA	5p15.31		rs530573459-T	0.001377	4E-8		0.24294	[0.16-0.33] unit increase	Illumina [13478778] (imputed)	N
642	chr5	7519297	7519298	rs17826816	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	5p15.31	NR	rs17826816-A	NR	2E-8		5.642	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
642	chr5	7519297	7519298	rs17826816	24618891	Muhleisen TW	2014-03-11	Nat Commun	Genome-wide association study reveals two new risk loci for bipolar disorder.	Bipolar disorder	9,747 European ancestry cases, 14,278 European ancestry controls	NA	5p15.31	ADCY2	rs17826816-G	NR	1E-8		1.14	[NR]	Illumina [2267487] (imputed)	N
642	chr5	7520880	7520881	rs13166360	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	5p15.31		rs13166360-?	NR	7E-9				NR [~ 8900000] (imputed)	N
642	chr5	7528824	7528825	rs12654951	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Posterior-cingulate cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	5p15.31	ADCY2	rs12654951-?		2E-6				Illumina [4322238] (imputed)	N
642	chr5	7533984	7533985	rs78308718	34002096	Mullins N	2021-05-17	Nat Genet	Genome-wide association study of more than 40,000 bipolar disorder cases provides new insights into the underlying biology.	Bipolar I disorder	25,060 European ancestry cases, 449,978 European ancestry controls	NA	5p15.31	NR	rs78308718-T	0.773	7E-11		0.9175	[0.89-0.94]	Affymetrix, Illumina [7549318] (imputed)	N
642	chr5	7538301	7538302	rs4256319	31220337	Carr DF	2019-06-20	Clin Pharmacol Ther	Genome-wide association study of statin-induced myopathy in patients recruited using the UK clinical practice research datalink.	Atorvastatin-induced myopathy	28 European ancestry cases, 2,501 controls	NA	5p15.31	ADCY2	rs4256319-?	NR	3E-6		50.0	[8.33-?]	Illumina [654642] (imputed)	N
642	chr5	7540450	7540451	rs17827444	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Small vessel stroke	333 Indian ancestry cases, 2,154 Indian ancestry controls	NA	5p15.31		rs17827444-?	NR	8E-6		1.1446283	[1.07885711821197-1.21440902748581]	Illumina [7827597] (imputed)	N
642	chr5	7542910	7542911	rs28565152	34002096	Mullins N	2021-05-17	Nat Genet	Genome-wide association study of more than 40,000 bipolar disorder cases provides new insights into the underlying biology.	Bipolar disorder	41,917 European ancestry cases, 371,549 European ancestry controls	NA	5p15.31	ADCY2	rs28565152-G	0.762	2E-9		0.9351	[0.91-0.96]	Affymetrix, Illumina [7549318] (imputed)	N
642	chr5	7542910	7542911	rs28565152	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Bipolar disorder vs major depressive disorder (ordinary least squares (OLS))	20,352 bipolar disorder cases, 170,756 major depressive disorder cases	NA	5p15.31		rs28565152-?	NR	3E-8		0.0153	NR unit increase	NR [6265453] (imputed)	N
642	chr5	7573965	7573966	rs34930574	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Pars opercularis volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	5p15.31	ADCY2	rs34930574-?		4E-6				Illumina [4322238] (imputed)	N
643	chr5	7627241	7627242	rs78277363	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	5p15.31	ADCY2	rs78277363-A	0.01	3E-8	(EA)	0.4448	[0.29-0.6] unit increase	Illumina [~ 9000000] (imputed)	N
643	chr5	7627241	7627242	rs78277363	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	5p15.31	ADCY2	rs78277363-A	0.01	1E-7		0.424	[0.27-0.58] unit increase	Illumina [~ 9000000] (imputed)	N
643	chr5	7649859	7649860	rs4702484	22864933	O'Donnell PH	2012-01-03	Cancer	Identification of novel germline polymorphisms governing capecitabine sensitivity.	Capecitabine sensitivity	Up to 84 East Asian ancestry lymphoblastoid cell lines, up to 164 European ancestry lymphoblastoid cell lines, up to 173 African ancestry lymphoblastoid cell lines, up to 82 African American lymphoblastoid cell lines	NA	5p15.31	MTRR, ADCY2	rs4702484-?	NR	6E-7				NR [~ 2000000]	N
643	chr5	7649859	7649860	rs4702484	22864933	O'Donnell PH	2012-01-03	Cancer	Identification of novel germline polymorphisms governing capecitabine sensitivity.	Capecitabine sensitivity	Up to 84 East Asian ancestry lymphoblastoid cell lines, up to 164 European ancestry lymphoblastoid cell lines, up to 173 African ancestry lymphoblastoid cell lines, up to 82 African American lymphoblastoid cell lines	NA	5p15.31	MTRR, ADCY2	rs4702484-?	NR	5E-8	(EA)			NR [~ 2000000]	N
644	chr5	7755899	7755900	rs58502974	27890468	van Hulzen KJE	2016-10-18	Biol Psychiatry	Genetic Overlap Between Attention-Deficit/Hyperactivity Disorder and Bipolar Disorder: Evidence From Genome-wide Association Study Meta-analysis.	Bipolar disorder or attention deficit hyperactivity disorder	9,650 European ancestry bipolar disorder cases, 2,950 European ancestry ADHD cases, 1,659 European and unknown ancestry ADHD cases, 16,325 European ancestry controls, 2,942 European and unknown ancestry controls, 2,096 controls	NA	5p15.31	ADCY2	rs58502974-?	NR	1E-7				Affymetrix, Illumina [NR] (imputed)	N
644	chr5	7755899	7755900	rs58502974	27890468	van Hulzen KJE	2016-10-18	Biol Psychiatry	Genetic Overlap Between Attention-Deficit/Hyperactivity Disorder and Bipolar Disorder: Evidence From Genome-wide Association Study Meta-analysis.	Bipolar disorder (age of onset <21) or attention deficit hyperactivity disorder	5,167 European ancestry bipolar disorder cases, 2,950 European ancestry ADHD cases, 1,659 European and unknown ancestry ADHD cases, 16,325 European ancestry controls, 2,942 European and unknown ancestry controls, 2,096 controls	NA	5p15.31	ADCY2	rs58502974-A	0.44	2E-8		1.13	[NR]	Affymetrix, Illumina [NR]	N
644	chr5	7758038	7758039	rs4072339	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	5p15.31		rs4072339-G	NR	4E-8		0.0073	[0.0048-0.0098] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
644	chr5	7779502	7779503	rs7704053	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	5p15.31	NR	rs7704053-?	NR	7E-27				Affymetrix [NR]	N
644	chr5	7816644	7816645	rs326155	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral fat	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	5p15.31	ADCY2	rs326155-G	0.01	4E-6	(men)			Affymetrix, Illumina [2500000] (imputed)	N
644	chr5	7818948	7818949	rs183141228	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mononucleosis	17,457 European ancestry cases, 68,446 European ancestry controls	NA	5p15.31	NR	rs183141228-?	NR	8E-6		0.5217	[0.28-0.76] unit increase	Illumina [at least 560000] (imputed)	N
644	chr5	7855748	7855749	rs7721678	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	5p15.31		rs7721678-?	NR	9E-10				NR [~ 8900000] (imputed)	N
645	chr5	7870082	7870083	rs326119	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	5p15.31		rs326119-A	NR	3E-9		0.0119	[0.008-0.0158] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
645	chr5	7870082	7870083	rs326119	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	5p15.31		rs326119-A	NR	1E-8		0.0115	[0.0076-0.0154] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
645	chr5	7905482	7905483	rs57085915	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	5p15.31	Intergenic	rs57085915-A	0.9282	2E-8	(MTAG)	0.0143	[0.0094-0.0192] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
645	chr5	7927331	7927332	rs75515594	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	5p15.31		rs75515594-T	0.0781	1E-8	(conditional-joint)	0.0149	[0.0098-0.02] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
645	chr5	7943245	7943246	rs162445	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	5p15.31		rs162445-A	0.0788	6E-9		0.0152	[0.01-0.02] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
645	chr5	7971971	7971972	rs184683611	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage colony stimulating factor levels	840 Finnish ancestry individuals	NA	5p15.31	NR	rs184683611-T	NR	5E-6		0.675	[0.38-0.97] SD units decrease	NR [10700000] (imputed)	N
645	chr5	7983251	7983252	rs13170463	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal cancer	978 Austrian ancestry colorectal cancer cases, 636 Austrian ancestry advanced colorectal adenoma cases, 4,294 European ancestry controls	NA	5p15.31	Intergenic	rs13170463-?		6E-7		1.62	[NR]	Affymetrix [492217] (imputed)	N
645	chr5	7983251	7983252	rs13170463	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal cancer	978 Austrian ancestry cases, 4,294 European ancestry controls	NA	5p15.31	Intergenic	rs13170463-?		5E-6		1.667	[NR]	Affymetrix [492217] (imputed)	N
646	chr5	8047708	8047709	rs6871559	32308125	Wolking S	2020-04-20	Pharmacogenomics	Pharmacoresponse in genetic generalized epilepsy: a genome-wide association study.	Response to antiepileptic drugs in genetic generalized epilepsy	608 European ancestry responders, 278 European ancestry non-responders	NA	5p15.31	intergenic	rs6871559-?	NR	5E-6				Affymetrix, Illumina [at least 3287443] (imputed)	N
646	chr5	8058256	8058257	rs17269205	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Stem cell factor levels	8,290 Finnish ancestry individuals	NA	5p15.31	NR	rs17269205-G		8E-6		0.6593	[0.37-0.95] SD units decrease	NR [10700000] (imputed)	N
646	chr5	8116824	8116825	rs11741704	30327367	Jung SY	2018-10-16	Cancer Prev Res (Phila)	Genome-wide meta-analysis of gene-environmental interaction for insulin-resistance phenotypes and breast cancer risk in postmenopausal women.	Hyperinsulinemia in lower physical activity	6,818 European ancestry women	NA	5p15.31	MTRR	rs11741704-?	NR	4E-9		1.28	[NR]	NR [18717781] (imputed)	N
647	chr5	8127830	8127831	rs13188458	30327367	Jung SY	2018-10-16	Cancer Prev Res (Phila)	Genome-wide meta-analysis of gene-environmental interaction for insulin-resistance phenotypes and breast cancer risk in postmenopausal women.	Hyperinsulinemia in lower physical activity	6,818 European ancestry women	NA	5p15.31	LOC729506	rs13188458-?	NR	2E-9		1.29	[NR]	NR [18717781] (imputed)	N
647	chr5	8130289	8130290	rs34799743	30327367	Jung SY	2018-10-16	Cancer Prev Res (Phila)	Genome-wide meta-analysis of gene-environmental interaction for insulin-resistance phenotypes and breast cancer risk in postmenopausal women.	Hyperinsulinemia x physical activity interaction	4,976 European ancestry active women, 6,818 European ancestry inactive women	NA	5p15.31	LOC729506	rs34799743-?	NR	9E-6				NR [18717781] (imputed)	N
647	chr5	8219358	8219359	rs16880092	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	5p15.31	NR	rs16880092-?	NR	8E-6				Affymetrix [NR]	N
648	chr5	8305569	8305570	rs199602655	32936915	Chai JF	2020-09-16	J Clin Endocrinol Metab	Genome-wide association for HbA1c in Malay identified deletion on SLC4A1 that influences HbA1c independent of glycemia.	Glycated hemoglobin levels	2,704 Malay ancestry individuals	NA	5p15.31		rs199602655-A	0.92	7E-9		0.103	[0.068-0.138] unit increase	Illumina [47095002] (imputed)	N
649	chr5	8404857	8404858	rs73049361	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,931 Sub-Saharan African ancestry males	NA	5p15.31		rs73049361-G	0.864068	8E-6		0.0177794	[0.0099-0.0256] unit increase	Illumina [13900000] (imputed)	N
649	chr5	8435292	8435293	rs73051426	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,931 Sub-Saharan African ancestry males	NA	5p15.31		rs73051426-T	0.865778	1E-6		0.019845	[0.012-0.028] unit increase	Illumina [13900000] (imputed)	N
649	chr5	8512934	8512935	rs7732041	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	5p15.31	intergenic	rs7732041-?	NR	4E-6		0.136	[0.063-0.209] unit increase	Illumina [at least 13000000] (imputed)	N
650	chr5	8536852	8536853	rs1666789	27694959	Bonder MJ	2016-10-03	Nat Genet	The effect of host genetics on the gut microbiome.	Gut microbiota (functional units)	984 European ancestry individuals	530 European ancestry individuals	5p15.31	SEMA5A	rs1666789-A	NR	5E-8	(PROTOCATECHUATE-ORTHO-CLEAVAGE-PWY_protocatechuate_degradation_II_(ortho-cleavage_pathway))	5.4516397	NR Z-score increase	Illumina [8100000] (imputed)	N
650	chr5	8543189	8543190	rs1633735	25648963	Debette S	2014-11-25	Biol Psychiatry	Genome-wide studies of verbal declarative memory in nondemented older people: the Cohorts for Heart and Aging Research in Genomic Epidemiology consortium.	Verbal declarative memory	Up to 27,337 European ancestry individuals, up to 472 Korkulan individuals, up to 1,267 Erasmus Rucphen Family individuals	Up to 10,617 European ancestry individuals, up to 3,811 African American individuals	5p15.31	SEMA5A, MTRR	rs1633735-T	0.25	3E-6	(PAR-dr, EA)			Affymetrix, Illumina [NR] (imputed)	N
650	chr5	8543189	8543190	rs1633735	25648963	Debette S	2014-11-25	Biol Psychiatry	Genome-wide studies of verbal declarative memory in nondemented older people: the Cohorts for Heart and Aging Research in Genomic Epidemiology consortium.	Verbal declarative memory	Up to 27,337 European ancestry individuals, up to 472 Korkulan individuals, up to 1,267 Erasmus Rucphen Family individuals	Up to 10,617 European ancestry individuals, up to 3,811 African American individuals	5p15.31	SEMA5A, MTRR	rs1633735-T	0.25	3E-6	(PAR-dr)			Affymetrix, Illumina [NR] (imputed)	N
650	chr5	8544036	8544037	rs1700575	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	5p15.31	NR	rs1700575-?	NR	9E-7	(EA)	4.150941	[2.52-5.78] unit increase	Affymetrix [at least 600000] (imputed)	N
650	chr5	8548223	8548224	rs1633732	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5p15.31	MTRR	rs1633732-?	NR	6E-6	(cotinine)	0.17187569	[0.098-0.246] unit increase	Affymetrix [at least 2500000] (imputed)	N
650	chr5	8647118	8647119	rs17221177	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Supramarginal gyrus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	5p15.31	NR	rs17221177-?		4E-6				Illumina [4322238] (imputed)	N
650	chr5	8647758	8647759	rs114082964	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,963 Sub-Saharan African ancestry females	NA	5p15.31		rs114082964-G	0.989307	2E-6		0.0608826	[0.036-0.086] unit decrease	Illumina [13900000] (imputed)	N
651	chr5	8652869	8652870	rs200113	22229870	Karns R	2012-01-09	Ann Hum Genet	Genome-wide association of serum uric acid concentration: replication of sequence variants in an island population of the Adriatic coast of Croatia.	Uric acid levels	1,300 European ancestry individuals	NA	5p15.31	SEMA5A	rs200113-C	0.10	7E-8		28.59	[NR] umol/L increase	Affymetrix [2241249] (imputed)	N
651	chr5	8702657	8702658	rs190624092	34387878	Kim KY	2021-08-13	Hepatology	Genome-wide association of individual vulnerability with alcoholic liver disease: A Korean Genome and Epidemiology Study.	Alcohol-associated liver disease in heavy drinkers	1,185 Korean ancestry cases, 2,246 Korean ancestry controls	NA	5p15.31		rs190624092-?	NR	9E-7		1.621	[1.337-1.966]	Affymetrix [7975321] (imputed)	N
651	chr5	8722290	8722291	rs9313253	34050200	Choi JW	2021-05-28	Sci Rep	Genetically determined hypoalbuminemia as a risk factor for hypertension: instrumental variable analysis.	Hypoalbuminemia	1,168 East Asian ancestry cases, 3,157 East Asian ancestry controls	NA		intergenic	rs9313253-T		7E-6	(additive)	1.63	NR unit increase	Affymetrix [519364]	N
651	chr5	8731738	8731739	rs78266804	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric bone mineral content (femoral neck)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	5p15.31	NR	rs78266804-A	0.236	2E-6	(Males)	0.264756	[0.16-0.37] unit increase	Illumina [~ 6600000] (imputed)	N
652	chr5	8888159	8888160	rs114888479	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,931 Sub-Saharan African ancestry males	NA	5p15.31		rs114888479-G	0.933427	5E-6		0.0246461	[0.014-0.036] unit decrease	Illumina [13900000] (imputed)	N
653	chr5	8982876	8982877	rs78981012	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5p15.31	NR	rs78981012-G	0.02265	5E-9	(PSME1)	0.5282	NR unit increase	Illumina [1671387] (imputed)	N
653	chr5	8983720	8983721	rs11134338	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	5p15.31	SEMA5A	rs11134338-A	0.131	8E-6	(ALT/AST)	0.03	[NR] unit increase	Illumina [899892]	N
654	chr5	9084175	9084176	rs76677754	33578652	Adjei AA	2021-02-10	Cancers (Basel)	Genetic Variations and Health-Related Quality of Life (HRQOL): A Genome-Wide Study Approach.	Mental health related quality of life	1,386 European ancestry individuals, 56 individuals	NA	5p15.31	SEMA5A	rs76677754-T	0.021	5E-7		14.26	[8.75-19.77] unit decrease	Illumina [7254516] (imputed)	N
654	chr5	9085896	9085897	rs189859825	29378355	Stanne TM	2018-02-01	Thromb Haemost	A Genome-wide Study of Common and Rare Genetic Variants Associated with Circulating Thrombin Activatable Fibrinolysis Inhibitor.	Thrombin-activatable fibrinolysis inhibitor levels	3,116 European ancestry individuals	NA	5p15.31	SEMA5A, MIR4636	rs189859825-C	0.033	1E-6		0.11	[0.067-0.153] unit increase	Illumina [10000000] (imputed)	N
654	chr5	9130779	9130780	rs1479647	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Lateral ventricle volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	5p15.31	SEMA5A	rs1479647-?		3E-6				Illumina [4322238] (imputed)	N
654	chr5	9171201	9171202	rs40719	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	5p15.31	Intergenic	rs40719-?	NR	6E-6		1.339	[NR]	Affymetrix [492217] (imputed)	N
655	chr5	9284937	9284938	rs3797975	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SEMA5A	5,363 Icelandic ancestry individuals	NA	5p15.31		rs3797975-C	0.4348	3E-35		0.230884	[0.19-0.27] unit decrease	Illumina [7506463] (imputed)	N
656	chr5	9317251	9317252	rs12655979	30242241	Hachiya T	2018-09-21	Sci Rep	Genome-wide analysis of polymorphism x sodium interaction effect on blood pressure identifies a novel 3'-BCL11B gene desert locus.	Diastolic blood pressure x sodium interaction (1df test)	4,527 Japanese ancestry individuals	4,241 Japanese ancestry individuals	5p15.31	intergenic	rs12655979-T	0.979	7E-6	(dominant model)	0.093	[0.052-0.134] unit increase	Illumina [7135436] (imputed)	N
656	chr5	9317365	9317366	rs10040952	31586183	Niazi Y	2019-10-04	Mutagenesis	Distinct pathways associated with chromosomal aberration frequency in a cohort exposed to genotoxic compounds compared to general population.	High chromosomal aberration frequency (chromatid type) in genotoxic compound exposure	345 European and unknown ancestry cases, 262 European and unknown ancestry controls	NA	5p15.31	SEMA5A	rs10040952-?	NR	6E-7		2.4	[1.71-3.39]	Illumina [> 2600000] (imputed)	N
656	chr5	9317711	9317712	rs12658330	30648747	Dudenkov TM	2019-01-16	Clin Pharmacol Ther	Anastrozole Aromatase Inhibitor Plasma Drug Concentration Genome-Wide Association Study: Functional Epistatic Interaction between SLC38A7 and ALPPL2.	Plasma anastrozole concentration in anastrozole-treated estrogen receptor positive breast cancer	634 European ancestry individuals, 40 African ancestry individuals, 13 Asian ancestry individuals	NA	5p15.31	NR	rs12658330-G	0.0207	5E-6		0.902	[0.52-1.28] unit increase	Illumina [~ 600000] (imputed)	N
656	chr5	9332280	9332281	rs7702187	16252231	Maraganore DM	2005-09-09	Am J Hum Genet	High-resolution whole-genome association study of Parkinson disease.	Parkinson's disease	381 European ancestry cases, 363 European ancestry controls, 62 cases,79 controls, 1 Asian ancestry control from 443 sibships	269 European ancestry cases, 272 European ancestry controls, 62 cases, 60 controls, 1 Asian ancestry case	5p15.31	SEMA5A	rs7702187-?	NR	8E-6		1.74	[1.36-2.24]	Perlegen [198345]	N
656	chr5	9357055	9357056	rs2463505	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	5p15.31	NR	rs2463505-?	NR	3E-7	(AA)	1.1143	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
656	chr5	9357941	9357942	rs2463506	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip	15 Asian ancestry cases, 13 European ancestry cases, 15 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	5p15.31	NR	rs2463506-?	NR	9E-6		3.69	[2.8-4.86]	Illumina [539000] (imputed)	N
656	chr5	9386584	9386585	rs12653117	26562150	Seldin MF	2015-10-10	Mol Med	Genome-wide Association Study of Late-Onset Myasthenia Gravis: Confirmation of TNFRSF11A, and Identification of ZBTB10 and Three Distinct HLA Associations.	Late-onset myasthenia gravis	532 European ancestry cases, 2,128 European ancestry controls	NA	5p15.31	SEMA5A	rs12653117-T	0.08	5E-7		1.76	[1.42-2.17]	Illumina [6175472] (imputed)	N
657	chr5	9474945	9474946	rs433755	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	5p15.31	SEMA5A	rs433755-C	0.451	5E-7	(Total cysteine )	0.03	[NR] umol/L increase	Illumina [899892]	N
657	chr5	9516476	9516477	rs16882975	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	5p15.31	SEMA5A	rs16882975-T	NR	7E-6		0.328244	[0.19-0.47] unit increase	Illumina [at least 950000] (imputed)	N
657	chr5	9544676	9544677	rs1319222	31311600	Namjou B	2019-07-17	BMC Med	GWAS and enrichment analyses of non-alcoholic fatty liver disease identify new trait-associated genes and pathways across eMERGE Network.	Non-alcoholic fatty liver disease activity score in non-alcoholic fatty liver disease	235 European ancestry individuals	NA	5p15.31	SEMA5A	rs1319222-G	0.259574	7E-6		0.795737	[0.46-1.14] unit decrease	NR [7263501] (imputed)	N
657	chr5	9544828	9544829	rs788321	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	5p15.31		rs788321-A	0.4	3E-16		8.17	z score increase	Affymetrix [9061022] (imputed)	N
657	chr5	9544828	9544829	rs788321	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	5p15.31		rs788321-A	0.4	6E-12		6.89	z score increase	Affymetrix [9061022] (imputed)	N
657	chr5	9544828	9544829	rs788321	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	5p15.31	NR	rs788321-A	0.4143	6E-12				NR [9056863] (imputed)	N
657	chr5	9546097	9546098	rs112941079	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	5p15.31	SEMA5A, SNHG18, SNORD123	rs112941079-A	0.8676	4E-13		0.0615	[0.045-0.078] unit increase	Affymetrix [at least 7947838] (imputed)	N
657	chr5	9547241	9547242	rs17329170	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5p15.31	SEMA5A	rs17329170-A	0.101	1E-425	(Semaphorin-5A, SEMA5A.13132.14.3)	1.43	[1.37-1.49] unit increase	Affymetrix [10572788] (imputed)	N
657	chr5	9550769	9550770	rs16883128	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	5p15.31	SEMA5A	rs16883128-G	0.881875	1E-357	(SEMA5A, 13132_14_3)	1.3853438	[1.33-1.44] unit decrease	Illumina [> 1000000] (imputed)	N
657	chr5	9552337	9552338	rs17263917	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	5p15.31	SEMA5A, SNHG18, SNORD123	rs17263917-A	0.143	2E-12		0.066	[0.048-0.084] unit decrease	Affymetrix [7947838] (imputed)	N
657	chr5	9556693	9556694	rs1508798	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	5p15.31	SNHG18, TAS2R1	rs1508798-?	NR	6E-8		0.0351656	[0.022-0.048] unit decrease	Illumina [4804024] (imputed)	N
657	chr5	9556693	9556694	rs1508798	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	5p15.31	SNHG18, SNORD123	rs1508798-T	0.8131	5E-13		0.0516	[0.038-0.066] unit increase	NR [8041861] (imputed)	N
657	chr5	9557601	9557602	rs17264034	28044437	McDonald MN	2017-01-02	J Cachexia Sarcopenia Muscle	Body mass index change in gastrointestinal cancer and chronic obstructive pulmonary disease is associated with Dedicator of Cytokinesis 1.	Body mass index (change over time) in lung cancer or chronic obstructive pulmonary disease	112 lung cancer cases, 237 COPD cases	NA	5p15.31	LOC100505806	rs17264034-?		6E-7		0.081	[0.052-0.110] unit decrease	Affymetrix [418365]	N
658	chr5	9619863	9619864	rs77202753	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	5p15.31	NR	rs77202753-?	NR	8E-7				Affymetrix [5486770] (imputed)	N
658	chr5	9623621	9623622	rs10513025	19812673	Weiss LA	2009-10-08	Nature	A genome-wide linkage and association scan reveals novel loci for autism.	Autism	1,553 cases from 1,031 families	2,073 trios	5p15.31	SEMA5A, TAS2R1	rs10513025-?	NR	2E-7		1.81	[NR]	Affymetrix [~ 365000]	N
658	chr5	9632574	9632575	rs148943015	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid vs negative)	9,913 European ancestry cases, 85,072 European ancestry controls, 2,553 Hispanic or Latin American cases, 13,086 Hispanic or Latin American controls, 506 Black or African American cases, 3,110 Black or African American controls	NA	5p15.31		rs148943015-?	NR	2E-6		0.20792061	[0.12-0.29] unit increase	Illumina [9939936] (imputed)	N
658	chr5	9639310	9639311	rs149187155	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,963 Sub-Saharan African ancestry females, 3,931 Sub-Saharan African ancestry males	NA	5p15.31		rs149187155-C	0.989301	1E-6		0.0665319	[0.039-0.094] unit decrease	Illumina [7666802] (imputed)	N
658	chr5	9639310	9639311	rs149187155	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,963 Sub-Saharan African ancestry females	NA	5p15.31		rs149187155-C	0.989301	2E-6		0.0665319	[0.039-0.094] unit decrease	Illumina [13900000] (imputed)	N
658	chr5	9663858	9663859	rs41501	32126890	Ter Hark SE	2020-03-04	J Psychopharmacol	A new genetic locus for antipsychotic-induced weight gain: A genome-wide study of first-episode psychosis patients using amisulpride (from the OPTiMiSE cohort).	Weight gain in amisulpride-treated first-episode psychosis	184 European ancestry individuals, 9 African ancestry individuals, 6 Hispanic/Latin American individuals, 3 South Asian ancestry individuals, 2 East Asian ancestry individuals, 2 individuals	NA	5p15.31	NR	rs41501-A	NR	8E-6		0.5127	NR unit increase	Illumina [4533042] (imputed)	N
658	chr5	9666544	9666545	rs28800	32126890	Ter Hark SE	2020-03-04	J Psychopharmacol	A new genetic locus for antipsychotic-induced weight gain: A genome-wide study of first-episode psychosis patients using amisulpride (from the OPTiMiSE cohort).	Weight gain in amisulpride-treated first-episode psychosis	184 European ancestry individuals, 9 African ancestry individuals, 6 Hispanic/Latin American individuals, 3 South Asian ancestry individuals, 2 East Asian ancestry individuals, 2 individuals	NA	5p15.31	NR	rs28800-A	NR	5E-6		0.5223	NR unit increase	Illumina [4533042] (imputed)	N
659	chr5	9748606	9748607	rs4358496	30946739	Hu B	2019-04-04	PLoS Genet	Genome-wide association study reveals sex-specific genetic architecture of facial attractiveness.	Facial attractiveness (female raters)	1,792 European ancestry male individuals	NA	5p15.31	LOC285692	rs4358496-A	0.252	5E-7		0.255	[0.16-0.35] unit decrease	Illumina [7251583] (imputed)	N
659	chr5	9756328	9756329	rs7725217	23646285	Khor SS	2013-04-16	PeerJ	Genome-wide association study of HLA-DQB1*06:02 negative essential hypersomnia.	Hypersomnia (HLA-DQB1*06:02 negative)	125 Japanese ancestry cases, 562 Japanese ancestry controls		5p15.31	TAS2R1	rs7725217-C	0.223	1E-6	(dominant)	2.66	[1.78-3.98]	Affymetrix [508366] (imputed)	N
659	chr5	9823767	9823768	rs115360066	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-2 receptor antagonist levels	3,677 Finnish ancestry individuals	NA	5p15.31	NR	rs115360066-G		8E-7		0.1867	[0.11-0.26] SD units decrease	NR [10700000] (imputed)	N
659	chr5	9825081	9825082	rs73039647	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5p15.31	NR	rs73039647-T	0.01742	6E-9	(UCHL3)	0.01323	NR unit decrease	Illumina [1671387] (imputed)	N
660	chr5	9872557	9872558	rs2963897	33232274	Mohammadnejad A	2020-11-24	Aging (Albany NY)	Generalized correlation coefficient for genome-wide association analysis of cognitive ability in twins.	Cognitive function (generalized correlation coefficient)	900 Danish ancestry dizygotic twins, 272 Danish ancestry monozygotic twins	NA	5p15.31	NR	rs2963897-?	NR	9E-7			[NR]	Illumina [5779266] (imputed)	N
660	chr5	9902828	9902829	rs11959975	27236921	Rautanen A	2016-06-02	Am J Hum Genet	Polymorphism in a lincRNA Associates with a Doubled Risk of Pneumococcal Bacteremia in Kenyan Children.	Bacteremia	1,536 African ancestry cases, 2,677 African ancestry controls	434 African ancestry cases, 1,336 African ancestry controls	5p15.2	LOC285692	rs11959975-?	NR	5E-6		1.27	[NR]	Affymetrix [up to 10996499] (imputed)	N
660	chr5	9950404	9950405	rs12152807	29206233	Shendre A	2017-12-04	PLoS One	Genome-wide admixture and association study of subclinical atherosclerosis in the Women's Interagency HIV Study (WIHS).	Common carotid intima-media thickness in HIV infection	682 Black non-Hispanic HIV-positive women	NA	5p15.2	LOC285692, FAM173B	rs12152807-C	NR	4E-6		0.03086	[NR] unit increase	Illumina [1124301]	N
661	chr5	9972594	9972595	rs72737007	30014611	Weiss RB	2018-07-16	Ann Neurol	Long-range genomic regulators of THBS1 and LTBP4 modify disease severity in Duchenne muscular dystrophy.	Age at loss of ambulation in Duchenne muscular dystrophy	243 European ancestry cases, 10 cases	NA	5p15.2	NR	rs72737007-?	NR	6E-6				Illumina [1735619]	N
661	chr5	9972594	9972595	rs72737007	30014611	Weiss RB	2018-07-16	Ann Neurol	Long-range genomic regulators of THBS1 and LTBP4 modify disease severity in Duchenne muscular dystrophy.	Age at loss of ambulation in Duchenne muscular dystrophy	243 European ancestry cases, 10 cases	NA	5p15.2	NR	rs72737007-?	NR	2E-6	(EA)			Illumina [1735619]	N
661	chr5	9979083	9979084	rs553169	23577725	Naj AC	2013-05-01	Ann Hum Genet	Genetic factors in nonsmokers with age-related macular degeneration revealed through genome-wide gene-environment interaction analysis.	Age-related macular degeneration (smoking status interaction)	548 European ancestry ever smoking cases, 278 European ancestry ever smoking controls, 346 European ancestry never smoking cases, 247 European ancestry never smoking controls	NA	5p15.2	intergenic	rs553169-A	0.29	9E-6				Affymetrix [2543887] (imputed)	N
661	chr5	9998255	9998256	rs6890044	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Massiliomicrobiota sp002160815 abundance in stool	5,959 Finnish ancestry individuals	NA	5p15.2		rs6890044-C	0.134492	1E-8		0.0917114	[0.06-0.123] unit increase	Illumina [7980478] (imputed)	N
661	chr5	10035617	10035618	rs116452727	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5p15.2	NR	rs116452727-A	0.01394	2E-8	(EIF3K)	0.01803	NR unit decrease	Illumina [1671387] (imputed)	N
661	chr5	10084606	10084607	rs55962375	33594131	Donati G	2021-02-16	Sci Rep	Evidence for specificity of polygenic contributions to attainment in English, maths and science during adolescence.	Academic attainment (maths)	6,017 European ancestry adolescents	NA	5p15.2	NR	rs55962375-T	NR	2E-6		0.323	[0.19-0.45] unit decrease	Illumina [6319684] (imputed)	N
662	chr5	10133703	10133704	rs2662411	31219150	Ekenberg C	2019-06-13	J Infect Dis	Single nucleotide polymorphisms in HLA alleles are associated with HIV-1 viral load in demographically diverse, ART-naive participants from the START trial.	Pre-treatment viral load in HIV-1 infection	1,398 European ancestry individuals, 572 Black individuals, 418 Hispanic individuals, 13 Asian ancestry individuals, 39 individuals	NA	5p15.2	intergenic	rs2662411-G	0.518	1E-15		0.19	[0.14-0.23] unit decrease	Affymetrix [339439]	N
662	chr5	10136134	10136135	rs2658084	29109912	Rawofi L	2017-11-02	PeerJ	Genome-wide association study of pigmentary traits (skin and iris color) in individuals of East Asian ancestry.	Iris color (L* coordinate)	377 East Asian ancestry individuals	NA	5p15.2	CTD-2199O4.1	rs2658084-T	0.835307	2E-6		0.501949	[0.3-0.71] unit decrease	Illumina [at least 520076] (imputed)	N
662	chr5	10137588	10137589	rs906689	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Ischemic stroke (cardioembolic)	174 Indian ancestry cases, 2,154 Indian ancestry controls	NA	5p15.2		rs906689-?	NR	9E-6		1.1003786	[1.0548410584566-1.14788207584137]	Illumina [up to 7827597] (imputed)	N
662	chr5	10151116	10151117	rs6897543	30796134	Soderholm M	2019-02-22	Neurology	Genome-wide association meta-analysis of functional outcome after ischemic stroke.	3-month functional outcome in ischaemic stroke (modified Rankin score)	3,830 European and unknown ancestry modified Rankin score 0-2 cases, 2,335 European and unknown ancestry modified Rankin score 3-6 cases	NA	5p15.2	FAM173B	rs6897543-G	0.27	7E-6		1.24	[1.15-1.33]	Affymetrix, Illumina [~ 8500000] (imputed)	N
662	chr5	10159540	10159541	rs2009501	23319000	Luykx JJ	2013-01-15	Mol Psychiatry	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA/MHPG ratio)	up to 398 European ancestry individuals	NA	5p15.2	intergenic	rs2009501-C		2E-6		0.2964	unit decrease	Illumina [5767231] (imputed)	N
662	chr5	10165355	10165356	rs1508854	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5p15.2	CCT5	rs1508854-?	NR	3E-6	(alpha ketoglutarate)	0.2375471	[0.14-0.34] unit decrease	Affymetrix [at least 2500000] (imputed)	N
662	chr5	10169822	10169823	rs13361160	22956598	Peters MJ	2012-09-06	Ann Rheum Dis	Genome-wide association study meta-analysis of chronic widespread pain: evidence for involvement of the 5p15.2 region.	Pain	1,308 European ancestry female cases, 5,791 European ancestry female controls	1,480 European ancestry female cases, 7,989 European ancestry female controls	5p15.2	CCT5, FAM173B	rs13361160-C	0.435	5E-7		1.17	[1.10-1.24]	Illumina [2224068] (imputed)	N
662	chr5	10184966	10184967	rs6860678	29532581	Hallfors J	2018-03-13	Addict Biol	Genome-wide association study in Finnish twins highlights the connection between nicotine addiction and neurotrophin signaling pathway.	Nicotine withdrawal	540 Finnish ancestry cases and 1,163 Finnish ancestry controls from up to 739 families	NA	5p15.2	NR	rs6860678-T	0.15126	2E-6		0.1060647	[0.062-0.15] unit decrease	Illumina [9469131] (imputed)	N
663	chr5	10240548	10240549	rs2607324	29594489	Apewokin S	2018-03-28	Support Care Cancer	Host genetic susceptibility to Clostridium difficile infections in patients undergoing autologous stem cell transplantation: a genome-wide association study.	Clostridium difficile infection in multiple myeloma	57 European ancestry cases, 589 European ancestry controls	NA	5p15.2	NR	rs2607324-?		4E-6				Illumina [892589]	N
663	chr5	10264787	10264788	rs138168151	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Red cell distribution width	441,263 European ancestry individuals	NA	5p15.2		rs138168151-?	NR	8E-10		0.270737	[0.18-0.36] unit decrease	NR [9800000] (imputed)	N
663	chr5	10267089	10267090	rs2662532	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5p15.2	CMBL	rs2662532-?	NR	5E-6	(salicylurate)	0.24343811	[0.14-0.35] unit decrease	Affymetrix [at least 2500000] (imputed)	N
663	chr5	10341699	10341700	rs142774111	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Gamma glutamyl transferase levels in low alcohol consumption	8,716 individuals	NA	5p15.2	NR	rs142774111-?	NR	2E-6		0.0743	[0.044-0.105] unit increase	Illumina [~ 7800000] (imputed)	N
664	chr5	10372617	10372618	rs2607292	22446040	Wang KS	2012-03-16	Gene	A novel locus for body mass index on 5p15.2: a meta-analysis of two genome-wide association studies.	Body mass index	5,218 European ancestry individuals	762 European ancestry individuals	5p15.2	MARCH6	rs2607292-T	0.1	4E-6		0.7684	[NR] unit increase	Illumina [up to 520531]	N
664	chr5	10450145	10450146	rs2303986	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Mean arterial pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	NA	5p15.2	ROPN1L	rs2303986-T	0.00115221896703605	4E-6		3.3112671	[1.91-4.71] unit increase	Illumina [247039]	N
664	chr5	10464106	10464107	rs2967951	22446040	Wang KS	2012-03-16	Gene	A novel locus for body mass index on 5p15.2: a meta-analysis of two genome-wide association studies.	Body mass index	5,218 European ancestry individuals	762 European ancestry individuals	5p15.2	ROPN1L	rs2967951-T	0.1	1E-6		0.8064	[NR] unit increase	Illumina [up to 520531]	N
664	chr5	10467671	10467672	rs28574645	29855589	Chernus J	2018-05-31	Sci Rep	GWAS reveals loci associated with velopharyngeal dysfunction.	Velopharyngeal dysfunction	54 Hispanic or Latin American and unknown ancestry cases, 922 Hispanic or Latin American and unknown ancestry controls	NA	5p15.2	NR	rs28574645-?	NR	2E-6		0.078692056	[NR] unit decrease	Illumina [at least 269494] (imputed)	N
664	chr5	10467701	10467702	rs1092913	31170924	Kong S	2019-06-06	BMC Med Genet	Identification of female-specific genetic variants for metabolic syndrome and its component traits to improve the prediction of metabolic syndrome in females.	Triglyceride levels	4,659 Korean ancestry females	5,273 Korean ancestry females	5p15.2	ROPN1L	rs1092913-G	0.29213333333333336	2E-7		7.5431	[4.68-10.4] unit increase	Affymetrix [NR] (imputed)	N
664	chr5	10467701	10467702	rs1092913	21424380	Sehrawat B	2011-03-19	Hum Genet	Potential novel candidate polymorphisms identified in genome-wide association study for breast cancer susceptibility.	Breast cancer	302 European ancestry female cases, 321 European ancestry female controls	1,153 European ancestry female cases, 1,215 European ancestry female controls	5p15.2	ROPN1L	rs1092913-T	0.13	2E-6		1.45	[1.24-1.69]	Affymetrix [782838]	N
665	chr5	10500645	10500646	rs143537377	29695241	Charmet R	2018-04-25	Cardiovasc Diabetol	Novel risk genes identified in a genome-wide association study for coronary artery disease in patients with type 1 diabetes.	Coronary artery disease in type 1 diabetes	434 European ancestry cases with coronary artery disease, 3,123 European ancestry cases without coronary artery disease	585 cases with coronary artery disease, 2,612 cases without coronary artery disease	5p15.2	ROPN1L	rs143537377-C	0.096	8E-6	(EA)	1.88	[NR]	Illumina [6728637] (imputed)	N
665	chr5	10512696	10512697	rs111426949	23319000	Luykx JJ	2013-01-15	Mol Psychiatry	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA/MHPG ratio)	up to 398 European ancestry individuals	NA	5p15.2	intergenic	rs111426949-T		6E-6		0.2871	unit increase	Illumina [5767231] (imputed)	N
665	chr5	10517907	10517908	rs4702698	26362759	Rothwell S	2015-09-11	Ann Rheum Dis	Dense genotyping of immune-related loci in idiopathic inflammatory myopathies confirms HLA alleles as the strongest genetic risk factor and suggests different genetic background for major clinical subgroups.	Dermatomyositis or juvenile dermatomyositis	879 European dermatomyositis cases, 15,651 European juvenile dermatomyositis ancestry controls		5p15.2	ROPN1L, ANKRD33B	rs4702698-G		5E-6		1.22	[1.12-1.33]	Illumina [90536]	N
665	chr5	10521667	10521668	rs11750385	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	5p15.2	RP11-1C1.5	rs11750385-?	NR	4E-8	(subset analysis)			Illumina [130052]	N
665	chr5	10521728	10521729	rs11743774	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	5p15.2	RP11-1C1.5	rs11743774-A	0.0944	8E-6		0.0526	[0.029-0.076] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
665	chr5	10533450	10533451	rs814585	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental extreme longevity (95 years and older)	1,339 middle-aged British cases, 40,934 middle-aged British controls	NA	5p15.2	NR	rs814585-?	NR	8E-6		0.018861	[0.011-0.027] unit increase	Affymetrix [9658292] (imputed)	N
665	chr5	10585369	10585370	rs73034878	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	5p15.2	NR	rs73034878-T	NR	7E-11		0.018	[0.013-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
665	chr5	10601147	10601148	rs6554588	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	5p15.2		rs6554588-T	NR	2E-9		0.0141	[0.0096-0.0186] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
666	chr5	10624865	10624866	rs10062687	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	5p15.2		rs10062687-G	NR	4E-14		0.0157	[0.012-0.02] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
666	chr5	10624865	10624866	rs10062687	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	5p15.2	ANKRD33B	rs10062687-G	0.232594	3E-25		0.02725573	[0.022-0.032] unit increase	Affymetrix [93095623] (imputed)	N
666	chr5	10624865	10624866	rs10062687	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	5p15.2	ANKRD33B	rs10062687-G	0.232555	5E-21		0.024645543	[0.02-0.03] unit increase	Affymetrix [93095623] (imputed)	N
666	chr5	10624865	10624866	rs10062687	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	5p15.2	NR	rs10062687-G	0.232866	9E-25		0.024145	[0.02-0.029] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
666	chr5	10624865	10624866	rs10062687	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	5p15.2		rs10062687-?	NR	7E-23				NR [~ 8900000] (imputed)	N
666	chr5	10624865	10624866	rs10062687	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	5p15.2	ANKRD33B	rs10062687-G	0.2344	6E-11		0.02766186	[0.019-0.036] unit increase	Affymetrix [~ 2500000] (imputed)	N
666	chr5	10624865	10624866	rs10062687	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	5p15.2	ANKRD33B	rs10062687-G	0.2344	4E-10		0.02640527	[0.018-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
666	chr5	10630658	10630659	rs1026914	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5p15.2	NR	rs1026914-G	0.199791	1E-22				Affymetrix, Illumina [19872809] (imputed)	N
666	chr5	10630658	10630659	rs1026914	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	5p15.2	ANKRD33B	rs1026914-G	0.2343	2E-9		0.02558955	[0.017-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
666	chr5	10636347	10636348	rs12153376	32366958	Woodbury-Smith MR	2020-05-04	Sci Rep	Genome-wide association study of emotional empathy in children.	Emotional recognition	4,780 European ancestry children	NA	5p15.2	NR	rs12153376-T	0.073	6E-7		543.2	[329.58-756.82] unit increase	Illumina [27449291] (imputed)	N
666	chr5	10671039	10671040	rs4702718	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	5p15.2	LOC645763	rs4702718-G	0.32	3E-6	(Diet carbohydrate )	0.04	[NR] %energy increase	Illumina [899892]	N
666	chr5	10680996	10680997	rs5745297	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	5p15.2		rs5745297-A	NR	5E-8		0.0159	[0.01-0.022] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
666	chr5	10680996	10680997	rs5745297	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	5p15.2		rs5745297-?	NR	2E-8				NR [~ 8900000] (imputed)	N
666	chr5	10680996	10680997	rs5745297	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5p15.2		rs5745297-?	NR	1E-10				NR [~ 8900000] (imputed)	N
666	chr5	10684941	10684942	rs3822411	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	5p15.2	DAP	rs3822411-C	0.3367	4E-9		0.02229396	[0.015-0.03] unit increase	Affymetrix [~ 2500000] (imputed)	N
666	chr5	10688754	10688755	rs12513896	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	5p15.2	DAP	rs12513896-C	0.252329	2E-10		0.016343128	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
666	chr5	10689561	10689562	rs3776414	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	5p15.2	DAP	rs3776414-?	NR	6E-9	(subset analysis)			Illumina [130052]	N
666	chr5	10689561	10689562	rs3776414	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	5p15.2	NR	rs3776414-?	NR	3E-14	(EA)			Affymetrix, Illumina [~ 9000000] (imputed)	N
666	chr5	10695525	10695526	rs2930047	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	5p15.2	DAP	rs2930047-?		5E-6				Illumina [9725440] (imputed)	N
666	chr5	10695525	10695526	rs2930047	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	5p15.2	DAP	rs2930047-?		4E-7				Illumina [9560910] (imputed)	N
666	chr5	10695525	10695526	rs2930047	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	5p15.2	NR	rs2930047-G	0.372	1E-7	(EA)	1.0703659	[1.05-1.1]	Affymetrix, Illumina [~ 9000000] (imputed)	N
666	chr5	10695525	10695526	rs2930047	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	5p15.2	NR	rs2930047-G	0.372	1E-12	(EA)	1.0912733	[1.07-1.12]	Affymetrix, Illumina [~ 9000000] (imputed)	N
666	chr5	10695525	10695526	rs2930047	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	5p15.2	DAP	rs2930047-C	0.382	1E-8		1.065	[1.034-1.096]	Affymetrix, Illumina [1230000] (imputed)	N
666	chr5	10699085	10699086	rs755546258	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	Height	19,965 British ancestry individuals from 6863 families.	NA	5p15.2	DAP	rs755546258-T	7.0E-4	3E-8		0.08185815	[0.053-0.111] m decrease	Illumina [24111857] (imputed)	N
666	chr5	10701513	10701514	rs3756407	23934736	Yu B	2013-08-11	Genet Epidemiol	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels (Pyroglutamine)	1,260 African American individuals	NA	5p15.2	DAP	rs3756407-A		5E-6		0.14	[0.2-0.08] unit increase	Affymetrix [~ 2500000] (imputed)	N
666	chr5	10704796	10704797	rs2918392	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Ulcerative colitis	5,371 European ancestry cases, 412,561 European ancestry controls, 314 East Asian ancestry cases, 178,375 East Asian ancestry controls	NA	5p15.2		rs2918392-C	NR	1E-8		0.1169	[0.077-0.157] unit increase	Affymetrix, Illumina [25840981] (imputed)	N
666	chr5	10704796	10704797	rs2918392	33310728	Ha E	2020-12-11	Ann Rheum Dis	Large-scale meta-analysis across East Asian and European populations updated genetic architecture and variant-driven biology of rheumatoid arthritis, identifying 11 novel susceptibility loci.	Rheumatoid arthritis	14,361 European ancestry cases, 43,923 European ancestry controls, 8,267 East Asian ancestry cases, 244,741 East Asian ancestry controls	NA	5p15.2		rs2918392-T	NR	5E-8		0.94	[0.91-0.96]	NR [13810676] (imputed)	N
666	chr5	10733775	10733776	rs60701	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	5p15.2	NR	rs60701-C	0.256718	4E-8		0.0188023	[0.012-0.026] unit increase	Affymetrix [16577313] (imputed)	N
666	chr5	10736579	10736580	rs267963	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	5p15.2	DAP	rs267963-A	0.618261	2E-13		0.016724922	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
667	chr5	10752314	10752315	rs267939	27694959	Bonder MJ	2016-10-03	Nat Genet	The effect of host genetics on the gut microbiome.	Gut microbiota (functional units)	984 European ancestry individuals	530 European ancestry individuals	5p15.2	DAP	rs267939-C	NR	4E-6	(PWY-5384_sucrose_degradation_IV_(sucrose_phosphorylase))	4.6339774	Z-score decrease	Illumina [8100000] (imputed)	N
667	chr5	10752314	10752315	rs267939	21297633	Anderson CA	2011-02-06	Nat Genet	Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47.	Ulcerative colitis	6,687 European ancestry cases, 19,718 European ancestry controls	9,628 European ancestry cases, 12,917 European ancestry controls	5p15.2	DAP	rs267939-C	0.37	6E-12		1.1	[1.06-1.15]	Affymetrix, Illumina [~ 1100000] (imputed)	N
667	chr5	10761152	10761153	rs201354802	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Height	458,235 European ancestry individuals	NA	5p15.2		rs201354802-?	NR	7E-10		0.108144	[0.074-0.142] unit increase	NR [9800000] (imputed)	N
667	chr5	10797885	10797886	rs6882716	24277619	Quillen EE	2013-11-26	Am J Med Genet B Neuropsychiatr Genet	ALDH2 is associated to alcohol dependence and is the major genetic determinant of "daily maximum drinks" in a GWAS study of an isolated rural Chinese sample.	Alcohol consumption (max-drinks)	272 Han Chinese ancestry individuals	NA	5p15.2	NR	rs6882716-?		2E-6		0.533	unit increase	Illumina [247725]	N
667	chr5	10806045	10806046	rs147517486	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5p15.2		rs147517486-?	NR	1E-9				NR [~ 8900000] (imputed)	N
667	chr5	10806756	10806757	rs6893200	29317602	Hall LS	2018-01-10	Transl Psychiatry	Genome-wide meta-analyses of stratified depression in Generation Scotland and UK Biobank.	Major depressive disorder	6,997 European ancestry female cases, 16,172 European ancestry female controls, 3,852 European ancestry male cases, 16,034 European ancestry male controls	NA	5p15.2	intergenic	rs6893200-T	NR	5E-6	(females)	0.11	[0.071-0.149] unit decrease	Affymetrix, Illumina [7105178] (imputed)	N
667	chr5	10811473	10811474	rs17176973	20889312	Wang KS	2010-10-01	Schizophr Res	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	5p15.2	NR	rs17176973-?	NR	5E-6		1.776	[NR]	Affymetrix [722112]	N
667	chr5	10820842	10820843	rs2964802	29317602	Hall LS	2018-01-10	Transl Psychiatry	Genome-wide meta-analyses of stratified depression in Generation Scotland and UK Biobank.	Recurrent major depressive disorder	7,345 European ancestry female cases, 32,211 European ancestry female controls	NA	5p15.2	intergenic	rs2964802-T	NR	2E-6		0.1	[0.061-0.139] unit increase	Affymetrix, Illumina [7105178] (imputed)	N
667	chr5	10820842	10820843	rs2964802	29317602	Hall LS	2018-01-10	Transl Psychiatry	Genome-wide meta-analyses of stratified depression in Generation Scotland and UK Biobank.	Major depressive disorder	6,997 European ancestry female cases, 16,172 European ancestry female controls, 3,852 European ancestry male cases, 16,034 European ancestry male controls	NA	5p15.2	intergenic	rs2964802-T	0.28	7E-7		0.09	[0.051-0.129] unit increase	Affymetrix, Illumina [7105178] (imputed)	N
667	chr5	10860485	10860486	rs185695143	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	5p15.2	DAP, CTNND2	rs185695143-C		3E-8		20.232	unit decrease	Affymetrix [at least 2696785] (imputed)	N
667	chr5	10860485	10860486	rs185695143	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	5p15.2	DAP, CTNND2	rs185695143-C		1E-7		13.537	unit decrease	Affymetrix [at least 2696785] (imputed)	N
667	chr5	10862046	10862047	rs11740905	29855537	Hirata T	2018-05-31	Sci Rep	Japanese GWAS identifies variants for bust-size, dysmenorrhea, and menstrual fever that are eQTLs for relevant protein-coding or long non-coding RNAs.	Menstruation quality of life impact (increased appetite)	760 Japanese ancestry female cases, 4,974 Japanese ancestry female controls	903 Japanese ancestry female cases, 4,711 Japanese ancestry female controls	5p15.2	NR	rs11740905-A	0.201888267	3E-6		0.23431596	[0.14-0.33] unit decrease	Affymetrix [536506]	N
668	chr5	10900393	10900394	rs56044142	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	5p15.2	NA	rs56044142-G	0.5398	4E-8	(Male)	1.0548522	[1.04-1.07]	Affymetrix, Illumina [NR] (imputed)	N
668	chr5	10969296	10969297	rs13181507	33841421	Li J	2021-03-25	Front Immunol	Variants at the MHC Region Associate With Susceptibility to <i>Clostridioides difficile</i> Infection: A Genome-Wide Association Study Using Comprehensive Electronic Health Records.	Clostridioides difficle infection	1,160 European ancestry cases, 14,144 European ancestry controls	NA	5p15.2	CTNND2	rs13181507-A	0.0144	3E-7		1.98	[1.58-2.4]	Illumina [64973696] (imputed)	N
668	chr5	10978611	10978612	rs61752681	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		CTNND2	rs61752681-?	NR	2E-9	(female)	2.21731	[NR] unit increase	Affymetrix [NR] (imputed)	N
669	chr5	11047680	11047681	rs2907092	29206233	Shendre A	2017-12-04	PLoS One	Genome-wide admixture and association study of subclinical atherosclerosis in the Women's Interagency HIV Study (WIHS).	Common carotid intima-media thickness in HIV infection	682 Black non-Hispanic HIV-positive women	NA	5p15.2	CTNND2	rs2907092-G	NR	2E-7		0.02498	[NR] unit increase	Illumina [1124301]	N
669	chr5	11084711	11084712	rs11744876	24529757	Xie T	2014-01-17	Neurobiol Aging	Genome-wide association study combining pathway analysis for typical sporadic amyotrophic lateral sclerosis in Chinese Han populations.	Amyotrophic lateral sclerosis (sporadic)	250 Han Chinese ancestry cases, 250 Han Chinese ancestry controls	NA	5p15.2	CTNND2	rs11744876-?	0.83	3E-8				Illumina [859311]	N
669	chr5	11088027	11088028	rs9312754	31991592	Coltell O	2020-01-24	Nutrients	Genome-Wide Association Study for Serum Omega-3 and Omega-6 Polyunsaturated Fatty Acids: Exploratory Analysis of the Sex-Specific Effects and Dietary Modulation in Mediterranean Subjects with Metabolic Syndrome.	Serum docosahexaenoic fatty acid concentration in metabolic syndrome	426 Mediterranean individuals	NA	5p15.2	CTNND2	rs9312754-C	0.261	6E-6		0.122	[0.069-0.175] unit increase	Illumina [621723]	N
669	chr5	11111770	11111771	rs6884431	22424883	Imboden M	2012-03-15	J Allergy Clin Immunol	Genome-wide association study of lung function decline in adults with and without asthma.	Pulmonary function decline	1,441 European ancestry asthma cases, 2,677 European ancestry controls	1,160 European ancestry asthma cases, 10,858 European ancestry controls	5p15.2	intergenic	rs6884431-?	NR	6E-6	(FEV1 decline in asthmatics)	0.1755	[0.100-0.251] unit decrease	Illumina [~ 2500000] (imputed)	N
669	chr5	11128039	11128061	rs143026003	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Sensorimotor dexterity	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	5p15.2	CTNND2	rs143026003-G	NR	9E-6		0.44890568	[0.25-0.65] unit decrease	Illumina [> 6200000] (imputed)	N
670	chr5	11169944	11169945	rs6885224	21095009	Li YJ	2010-11-20	Ophthalmology	Genome-wide association studies reveal genetic variants in CTNND2 for high myopia in Singapore Chinese.	Myopia (pathological)	65 Singaporean Chinese child cases, 238 Singaporean Chinese child controls, 222 Singaporean Chinese adult cases, 455 Singaporean Chinese adult cases	959 Japanese ancestry cases, 2,128 Japanese ancestry controls	5p15.2	CTNND2	rs6885224-C	0.26	8E-6		1.24	[1.11-1.39]	Illumina [459687]	N
670	chr5	11198336	11198337	rs6878462	29160301	Fabbri C	2017-11-21	Pharmacogenomics J	New insights into the pharmacogenomics of antidepressant response from the GENDEP and STAR*D studies: rare variant analysis and high-density imputation.	Response to antidepressants (symptom improvement)	2,145 European ancestry individuals	NA	5p15.2	CTNND2	rs6878462-?	NR	2E-6		0.1196	NR unit decrease	Affymetrix, Illumina [7062950] (imputed)	N
670	chr5	11232830	11232831	rs112030805	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking status (current vs mixed)	40,456 European ancestry current smokers, 13,511 African American current smokers, 2,920 Hispanic current smokers, 110,403 European ancestry mixed smokers, 23,605 African American mixed smokers, 11,221 Hispanic mixed smokers	NA	5p15.2		rs112030805-A	NR	2E-8	(EA)	0.92	NR	Affymetrix [~ 79000000] (imputed)	N
671	chr5	11298222	11298223	rs2530215	20889312	Wang KS	2010-10-01	Schizophr Res	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	5p15.2	NR	rs2530215-?	NR	7E-6		1.2196	[NR]	Affymetrix [722112]	N
671	chr5	11304422	11304423	rs26478	25378659	Lemaitre RN	2014-11-06	J Lipid Res	Genetic loci associated with circulating levels of very long-chain saturated fatty acids.	Very long-chain saturated fatty acid levels (fatty acid 20:0)	10,129 European ancestry individuals	NA	5p15.2	CTNND2	rs26478-A	NR	8E-6		4.47	[NR] Z score decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
671	chr5	11364755	11364756	rs140775566	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	5p15.2	NR	rs140775566-?	NR	2E-6		0.4149	[0.24-0.59] unit increase	Illumina [at least 560000] (imputed)	N
671	chr5	11366156	11366157	rs20476	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	5p15.2	NR	rs20476-?	NR	4E-6				Affymetrix [5486770] (imputed)	N
671	chr5	11371046	11371047	rs6887317	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Lewy body disease	up to 3,526 individuals	NA	5p15.2	CTNND2	rs6887317-A	0.407	9E-6	(Ordinal I)	0.2466	[0.14-0.36] unit increase	Affymetrix, Illumina [NR] (imputed)	N
671	chr5	11375973	11375974	rs1423494	28608620	Coleman JRI	2017-06-13	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of facial emotion recognition in children and association with polygenic risk for mental health disorders.	Facial emotion recognition	4,097 European ancestry individuals	NA	5p15.2	CTNND2	rs1423494-C	0.415	4E-6		4.69	z score decrease	Illumina [2487351] (imputed)	N
671	chr5	11387814	11387815	rs61749834	31598132	Donati G	2019-06-30	Mind Brain Educ	Genome-Wide Association Study of Latent Cognitive Measures in Adolescence: Genetic Overlap With Intelligence and Education.	Cognitive performance (processing speed)	4,611 European ancestry adolescents	NA	5p15.2	CTNND2	rs61749834-?	NR	6E-6		0.253	[0.14-0.37] unit decrease	Illumina [6319684] (imputed)	N
671	chr5	11397572	11397573	rs31837	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	5p15.2	NR	rs31837-?	NR	3E-12				Affymetrix [NR]	N
672	chr5	11416297	11416298	rs11955682	30306274	Shah RL	2018-10-10	Hum Genet	Genome-wide association studies for corneal and refractive astigmatism in UK Biobank demonstrate a shared role for myopia susceptibility loci.	Corneal astigmatism	Up to 86,335 European ancestry individuals		5p15.2	CTNND2	rs11955682-T	NR	3E-6		0.047	[0.027-0.067] dioptres increase	NR [5901671] (imputed)	N
672	chr5	11471878	11471879	rs2434672	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	5p15.2		rs2434672-A	0.5321	1E-10		0.0091	[0.0064-0.0118] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
672	chr5	11476811	11476812	rs31940	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	5p15.2	Intergenic	rs31940-A	0.1396	1E-10	(MTAG)	0.0122	[0.0085-0.0159] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
672	chr5	11500250	11500251	rs42271	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	5p15.2		rs42271-A	0.5631	1E-10	(conditional-joint)	0.0091	[0.0064-0.0118] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
672	chr5	11504925	11504926	rs62337555	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	5p15.2	Intergenic	rs62337555-T	0.139	2E-9	(MTAG)	0.0198	[0.013-0.026] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
672	chr5	11507367	11507368	rs16901689	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	5p15.2		rs16901689-T	0.1634	5E-9		0.0111	[0.0074-0.0148] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
672	chr5	11530087	11530088	rs7731185	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Myringotomy	4,138 European ancestry cases, 85,089 European ancestry controls	NA	5p15.2	NR	rs7731185-?	NR	5E-6		0.1313	[0.075-0.187] unit increase	Illumina [at least 560000] (imputed)	N
673	chr5	11544956	11544957	rs60936317	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	5p15.2	NR	rs60936317-?	NR	8E-9				Illumina [7760689] (imputed)	N
673	chr5	11584341	11584342	rs2190989	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	5p15.2	CTNND2	rs2190989-?	NR	1E-13		0.499	[0.36-0.63] unit decrease	Affymetrix [11100000] (imputed)	N
673	chr5	11594017	11594018	rs116596888	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	5p15.2	CTNND2	rs116596888-T	0.0114195209620738	7E-6	(G_Streptococcus_HB)	1.15047	[0.65-1.65] unit decrease	Illumina [7711310] (imputed)	N
673	chr5	11600938	11600939	rs10059423	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	5p15.2	NR	rs10059423-?	NR	1E-7				Affymetrix [NR]	N
674	chr5	11773483	11773484	rs143835899	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Measles	38,219 European ancestry cases, 47,279 European ancestry controls	NA	5p15.2	NR	rs143835899-?	NR	2E-6		0.455	[0.27-0.64] unit increase	Illumina [at least 560000] (imputed)	N
675	chr5	11852046	11852047	rs4499830	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	5p15.2	CTNND2	rs4499830-?		3E-8				Affymetrix, Illumina [NR] (imputed)	N
675	chr5	11868287	11868288	rs73052520	32841424	Herrera-Luis E	2020-08-25	Pediatr Allergy Immunol	Genome-wide association study reveals a novel locus for asthma with severe exacerbations in diverse populations.	Asthma with severe exacerbations	1,283 Latino cases, 2,027 Latino controls	448 African American cases, 595 African American controls	5p15.2	NR	rs73052520-C	0.976	5E-6	(Latino)	2.3255813	[1.61-3.33]	Affymetrix [9737707] (imputed)	N
675	chr5	11892383	11892384	rs114311699	27028160	Sherva R	2016-03-30	JAMA Psychiatry	Genome-wide Association Study of Cannabis Dependence Severity, Novel Risk Variants, and Shared Genetic Risks.	Cannabis dependence symptom count	Up to 6,000 African American ancestry individuals, 8,754 European ancestry individuals	At least 1,893 European ancestry individuals	5p15.2	CTNND2	rs114311699-T	0.96	3E-7	(AA)			Illumina [NR] (imputed)	N
675	chr5	11918902	11918903	rs7713607	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5p15.2	DAP	rs7713607-?	NR	3E-6	(TAG 48:0)	0.17723154	[0.1-0.25] unit increase	Affymetrix [at least 2500000] (imputed)	N
676	chr5	11930136	11930137	rs10060040	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		5p15.2	Intergenic	rs10060040-A	0.053	8E-6	(liability model)	0.17	[0.092-0.248] unit decrease	NR [19725427] (imputed)	N
677	chr5	12102036	12102037	rs4601043	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Putamen volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	5p15.2	NR	rs4601043-?		6E-6				Illumina [4322238] (imputed)	N
677	chr5	12184608	12184609	rs77503578	30610202	Ruderfer DM	2019-01-04	Mol Psychiatry	Significant shared heritability underlies suicide attempt and clinically predicted probability of attempting suicide.	Predicted suicide risk	24,546 European ancestry individuals	NA	5p15.2		rs77503578-C	0.98	4E-8		0.2208	unit increase	Illumina [~ 9000000] (imputed)	N
679	chr5	12330321	12330322	rs10073418	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	5p15.2	NR	rs10073418-A	0.343	2E-10		0.0072034	[0.005-0.0094] unit increase	NR [9732723] (imputed)	N
679	chr5	12396772	12396773	rs192520314	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	5p15.2	intergenic	rs192520314-G	0.0137134107933542	2E-6	(C_Deltaproteobacteria_HB)	1.22606	[0.72-1.73] unit decrease	Illumina [7711310] (imputed)	N
679	chr5	12439511	12439512	rs116785983	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	5p15.2	intergenic	rs116785983-T	0.010525475658964	2E-6	(F_Sutterellaceae_HB)	1.69313	[1-2.38] unit decrease	Illumina [7711310] (imputed)	N
680	chr5	12465739	12465740	rs32250	34746714	Hahn T	2021-08-25	EClinicalMedicine	Novel genetic variants associated with mortality after unrelated donor allogeneic hematopoietic cell transplantation.	Disease-related mortality after unrelated donor allogeneic hematopoietic cell transplantation (donor effect)	2,799 European ancestry donors	NA	5p15.2		rs32250-G	0.55	3E-8		1.4350505	[1.26363943763992-1.62971312109378]	Illumina [8515276] (imputed)	N
682	chr5	12780702	12780703	rs114053299	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	5p15.2	TAG	rs114053299-A		2E-6	(AA)	6.254	unit decrease	Affymetrix [at least 2696785] (imputed)	N
682	chr5	12780702	12780703	rs114053299	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	5p15.2	TAG	rs114053299-A		2E-6		6.254	unit decrease	Affymetrix [at least 2696785] (imputed)	N
682	chr5	12780702	12780703	rs114053299	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	5p15.2	TAG	rs114053299-A		5E-8		6.487	unit decrease	Affymetrix [at least 2696785] (imputed)	N
683	chr5	12883591	12883592	rs146099759	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Lung cancer	2,485 European ancestry cases, 410,350 European ancestry controls	NA	5p15.2		rs146099759-A	0.023916	3E-8		1.5586035	NR	Affymetrix [7846216] (imputed)	N
684	chr5	13005035	13005036	rs146456660	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		LINC02220	rs146456660-?	NR	1E-9	(female)	0.519493	[NR] unit increase	Affymetrix [NR] (imputed)	N
684	chr5	13076920	13076921	rs573194563	29367735	Nakagawa-Senda H	2018-01-24	Sci Rep	A genome-wide association study in the Japanese population identifies the 12q24 locus for habitual coffee consumption: The J-MICC Study.	Coffee consumption	11,261 Japanese ancestry individuals	NA	5p15.2	CT49, DNAH5	rs573194563-CA	0.955	5E-7		0.2708	[0.17-0.38] cups per day increase	Illumina [7094228] (imputed)	N
684	chr5	13100174	13100175	rs1840847	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	5p15.2	NR	rs1840847-A	NR	1E-8		5.669	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
684	chr5	13100174	13100175	rs1840847	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	5p15.2	NR	rs1840847-?	NR	4E-6		4.593	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
685	chr5	13205086	13205087	rs32546	33608531	Wu Y	2021-02-19	Nat Commun	GWAS of peptic ulcer disease implicates Helicobacter pylori infection, other gastrointestinal disorders and depression.	Gastroesophageal reflux disease	54,854 European ancestry cases, 401,473 European ancestry controls	NA	5p15.2	NR	rs32546-C	0.6	4E-8		1.04	[NR]	NR [8546065] (imputed)	N
686	chr5	13242973	13242974	rs10066447	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral fat	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	5p15.2	DNAH5	rs10066447-T	0.23	7E-6	(women)			Affymetrix, Illumina [2500000] (imputed)	N
686	chr5	13246335	13246336	rs11948770	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	5p15.2		rs11948770-T	0.768	5E-10		0.015	[0.011-0.019] unit decrease	Affymetrix [up to 90000000] (imputed)	N
686	chr5	13263373	13263374	rs146562173	32118827	Bonde A	2020-02-28	J Trauma Acute Care Surg	Identification of a new genetic variant associated with cholecystitis: a multicenter genome-wide association study.	Acute cholecystitis	900 European ancestry cases, 23,727 European ancestry controls	NA	5p15.2	NR	rs146562173-?		3E-8		1.0453	[NR]	Illumina [NR] (imputed)	N
686	chr5	13341368	13341369	rs7714774	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	5p15.2		rs7714774-?	NR	6E-8				NR [~ 8900000] (imputed)	N
686	chr5	13343819	13343820	rs62339710	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	5p15.2	NR	rs62339710-?	NR	2E-8				Illumina [7760689] (imputed)	N
688	chr5	13589211	13589212	rs4702961	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	5p15.2	Intergenic	rs4702961-T	0.6748	4E-8	(MTAG)	0.0097	[0.0062-0.0132] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
689	chr5	13693569	13693570	rs10036995	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Bacterial meningitis	842 European ancestry cases, 82,778 European ancestry controls	NA	5p15.2	NR	rs10036995-?	NR	5E-7		2.4803	[1.75-3.21] unit decrease	Illumina [at least 560000] (imputed)	N
689	chr5	13740975	13740976	rs6554809	22036096	Ramasamy A	2011-11-01	J Allergy Clin Immunol	A genome-wide meta-analysis of genetic variants associated with allergic rhinitis and grass sensitization and their interaction with birth order.	IgE grass sensitization	2,315 European ancestry cases, 10,032 European ancestry controls	NA	5p15.2	DNAH5	rs6554809-C	0.84	3E-6		1.29	[1.16-1.43]	Affymetrix, Illumina [2217510] (imputed)	N
689	chr5	13741162	13741163	rs6881967	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	5p15.2	DNAH5	rs6881967-A	0.702	4E-6		0.012	NR unit decrease	Illumina [NR] (imputed)	N
689	chr5	13741162	13741163	rs6881967	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	5p15.2	DNAH5	rs6881967-A	0.69	1E-6		0.048	NR unit decrease	Illumina [NR] (imputed)	N
689	chr5	13744083	13744084	rs1604476	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	5p15.2	DNAH5	rs1604476-T	0.386	3E-6		0.011	NR unit decrease	Illumina [NR] (imputed)	N
689	chr5	13745718	13745719	rs1502045	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	5p15.2	DNAH5	rs1502045-A	0.422	3E-6		0.012	NR unit increase	Illumina [NR] (imputed)	N
689	chr5	13747059	13747060	rs9687653	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	5p15.2	DNAH5	rs9687653-T	0.39	3E-6		0.011	NR unit decrease	Illumina [NR] (imputed)	N
689	chr5	13747826	13747827	rs34476088	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	5p15.2	DNAH5	rs34476088-A	0.387	3E-6		0.011	NR unit decrease	Illumina [NR] (imputed)	N
689	chr5	13748168	13748169	rs9765543	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	5p15.2	DNAH5	rs9765543-A	0.705	2E-6		0.014	NR unit increase	Illumina [NR] (imputed)	N
689	chr5	13749236	13749237	rs6897741	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	5p15.2	DNAH5	rs6897741-T	0.51	4E-6		0.011	NR unit decrease	Illumina [NR] (imputed)	N
689	chr5	13750974	13750975	rs6889428	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	5p15.2	DNAH5	rs6889428-T	0.625	3E-6		0.012	NR unit increase	Illumina [NR] (imputed)	N
689	chr5	13755671	13755672	rs1393270	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (unclassified genus belonging to family Ruminococcaceae)	1,068 Japanese ancestry individuals	NA	5p15.2	DNAH5	rs1393270-C	0.23	6E-6		0.0677	[0.039-0.097] unit decrease	Illumina [6380737] (imputed)	N
689	chr5	13755950	13755951	rs2134259	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	5p15.2	DNAH5	rs2134259-T	0.374	3E-6		0.012	NR unit decrease	Illumina [NR] (imputed)	N
689	chr5	13756128	13756129	rs2134257	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	5p15.2	DNAH5	rs2134257-A	0.374	3E-6		0.012	NR unit decrease	Illumina [NR] (imputed)	N
690	chr5	13764418	13764419	rs2896103	17903303	O'Donnell CJ	2007-09-19	BMC Med Genet	Genome-wide association study for subclinical atherosclerosis in major arterial territories in the NHLBI's Framingham Heart Study.	Subclinical atherosclerosis traits (other)	Up to 984 individuals	NA	5p15.2	DNAH5	rs2896103-?	NR	5E-6	(ABI)			Affymetrix [70897]	N
690	chr5	13769973	13769974	rs7715811	17903303	O'Donnell CJ	2007-09-19	BMC Med Genet	Genome-wide association study for subclinical atherosclerosis in major arterial territories in the NHLBI's Framingham Heart Study.	Subclinical atherosclerosis traits (other)	Up to 984 individuals	NA	5p15.2	DNAH5	rs7715811-?	NR	6E-6	(ABI)			Affymetrix [70897]	N
690	chr5	13779742	13779743	rs1502050	17903303	O'Donnell CJ	2007-09-19	BMC Med Genet	Genome-wide association study for subclinical atherosclerosis in major arterial territories in the NHLBI's Framingham Heart Study.	Subclinical atherosclerosis traits (other)	Up to 984 individuals	NA	5p15.2	DNAH5	rs1502050-?	NR	9E-6	(ABI)			Affymetrix [70897]	N
690	chr5	13790137	13790138	rs116105203	31073882	Plotnikov D	2019-05-09	Hum Genet	A commonly occurring genetic variant within the NPLOC4-TSPAN10-PDE6G gene cluster is associated with the risk of strabismus.	Strabismus	1,345 British ancestry cases, 65,349 British ancestry controls	116 cases, 5,084 controls	5p15.2	NR	rs116105203-A	0.01	5E-6	(EA)	2.06	[1.51-2.82]	Affymetrix [7469170] (imputed)	N
690	chr5	13798558	13798559	rs795544	23322567	Lopes MC	2013-01-15	Invest Ophthalmol Vis Sci	Identification of a candidate gene for astigmatism.	Corneal astigmatism	22,100 European ancestry individuals		5p15.2	DNAH5	rs795544-?	0.17	1E-6		0.063	[NR] unit increase	Affymetrix, Illumina [2800000] (imputed)	N
690	chr5	13816887	13816888	rs17265690	33607172	Nygaard M	2021-02-16	Mech Ageing Dev	Genome-wide association analysis of cognitive function in Danish long-lived individuals.	Cognitive function in longevity	490 Danish ancestry individuals	NA	5p15.2	DNAH5	rs17265690-G	0.0138	1E-7		13.63	[NR] unit increase	Illumina [4827900] (imputed)	N
690	chr5	13830036	13830037	rs201666766	32019955	Brcic L	2020-02-04	Sci Rep	AATF and SMARCA2 are associated with thyroid volume in Hashimoto's thyroiditis patients.	Thyroid volume in Hashimoto's thyroiditis	345 European ancestry individuals	NA	5p15.2	DNAH5	rs201666766-A	0.93	1E-7		0.1051	[-0.28494-0.49514] unit decrease	Illumina [6007542] (imputed)	N
690	chr5	13858327	13858328	rs7720298	27515689	Kerns SL	2016-07-20	EBioMedicine	Meta-analysis of Genome Wide Association Studies Identifies Genetic Markers of Late Toxicity Following Radiotherapy for Prostate Cancer.	Toxicity response to radiotherapy in prostate cancer (decreased urine stream) (time to event)	1,245 European ancestry individuals	NA	5p15.2	DNAH5	rs7720298-G	0.24	3E-8		2.71	[1.90-3.86]	NR [~ 38000000] (imputed)	N
690	chr5	13859278	13859279	rs924633	26030696	Cho MH	2015-06-01	Am J Respir Crit Care Med	A Genome-Wide Association Study of Emphysema and Airway Quantitative Imaging Phenotypes.	Emphysema imaging phenotypes	5,385 European ancestry chronic obstructive pulmonary disease cases, 901 African American chronic obstructive pulmonary disease cases, 3,613 European ancestry controls, 2,132 African American controls	NA	5p15.2	DNAH5	rs924633-A	NR	9E-7	(%LAA-950, All)	0.18	[-0.00032-0.36032] unit increase	Illumina [7600000] (imputed)	N
691	chr5	13931654	13931655	rs13355875	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5p15.2	NR	rs13355875-G	0.0122	8E-9	(CCDC58)	0.0156	NR unit decrease	Illumina [1671387] (imputed)	N
691	chr5	13989329	13989330	rs10035925	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	5p15.2		rs10035925-?	NR	1E-11				NR [~ 8900000] (imputed)	N
691	chr5	14018066	14018067	rs339947	34616010	Quintanilha JCF	2021-10-06	Br J Cancer	Bevacizumab-induced hypertension and proteinuria: a genome-wide study of more than 1000 patients.	Bevacizumab-induced proteinuria	1,039 European ancestry individuals	NA	5p15.2	intergenic	rs339947-A	0.14	2E-7		1.26	[0.79-1.73] unit increase	Illumina [828141]	N
692	chr5	14053880	14053881	rs751078348	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	5p15.2	TRIO	rs751078348-A	0.0017	8E-6		0.6047	[0.34-0.87] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
692	chr5	14053880	14053881	rs751078348	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	5p15.2	TRIO	rs751078348-A	0.0017	8E-6		0.6047	[0.34-0.87] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
692	chr5	14062068	14062069	rs11953563	33382417	Batai K	2020-12-31	J Nutr	Genome-Wide Association Study of Response to Selenium Supplementation and Circulating Selenium Concentrations in Adults of European Descent.	Response to selenium supplementation (change in plasma selenium concentration)	428 European ancestry individuals	NA	5p15.2	TRIO	rs11953563-?	0.44	9E-6		11.69	[6.6-16.78] unit decrease	Illumina [7663546] (imputed)	N
692	chr5	14072056	14072057	rs163818	24025145	Chung S	2013-09-11	Breast Cancer Res	A genome-wide association study of chemotherapy-induced alopecia in breast cancer patients.	Adverse response to chemotherapy in breast cancer (alopecia) (paclitaxel)	57 Japanese ancestry cases, 63 Japanese ancestry controls	NA	5p15.2	TRIO	rs163818-C	0.02	6E-7	(Dominant)	11.5	[3.37-39.3]	Illumina [555600]	N
692	chr5	14086274	14086275	rs55825883	35131881	Testori A	2022-02-07	Cancer Epidemiol Biomarkers Prev	Genetic analysis in African American children supports ancestry specific neuroblastoma susceptibility.	Neuroblastoma	254 African American cases, 2,990 African American controls	NA	5p15.2		rs55825883-A	NR	9E-6		0.995	unit increase	Illumina [NR] (imputed)	N
692	chr5	14116819	14116820	rs168242	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	5p15.2		rs168242-A	0.5225	8E-6		0.030258	[0.017-0.044] unit decrease	Affymetrix [15580782] (imputed)	N
693	chr5	14177234	14177235	rs12652543	32235003	Arbeev KG	2020-04-01	Aging (Albany NY)	Genetics of physiological dysregulation: findings from the long life family study using joint models.	Physiological dysregulation (Mahalanobis distance)	4,608 European ancestry individuals	NA	5p15.2	TRIO	rs12652543-?	NR	7E-9				Illumina [1464300]	N
693	chr5	14178039	14178040	rs33030	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5p15.2	NR	rs33030-A	0.04704	5E-10	(GGH)	0.05039	NR unit increase	Illumina [1671387] (imputed)	N
693	chr5	14235149	14235150	rs354285	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels	3,806 African American individuals	NA	5p15.2		rs354285-?	NR	2E-6		0.12	[0.069-0.171] unit increase	Affymetrix, Illumina [NR] (imputed)	N
694	chr5	14317887	14317888	rs182795071	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	5p15.2	NR	rs182795071-?	NR	2E-8				Illumina [7760689] (imputed)	N
694	chr5	14318003	14318004	rs79775842	30498476	Liu H	2018-11-15	Front Endocrinol (Lausanne)	Heritability and Genome-Wide Association Study of Plasma Cholesterol in Chinese Adult Twins.	High density lipoprotein cholesterol levels	139 Chinese ancestry dizygotic twin pairs	NA	5p15.2	TRIO	rs79775842-?		3E-7				Illumina [7405822] (imputed)	N
694	chr5	14372362	14372362	rs71599622	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	5p15.2	NR	rs71599622-T	NR	4E-8		1.047	[1.03-1.06]	Affymetrix, Illumina [29235255] (imputed)	N
694	chr5	14393620	14393621	rs10065203	23776197	Leandro-Garcia LJ	2013-06-17	J Med Genet	Genome-wide association study identifies ephrin type A receptors implicated in paclitaxel induced peripheral sensory neuropathy.	Paclitaxel-induced neuropathy	143 European ancestry individuals		5p15.2	TRIO	rs10065203-A	0.40	4E-6		2.51	[1.69-3.71]	Illumina [518577]	N
695	chr5	14434263	14434264	rs17428704	25387704	Malone SM	2014-12-01	Psychophysiology	Heritability and molecular-genetic basis of resting EEG activity: a genome-wide association study.	Electroencephalogram traits	2,383 European ancestry adolescents and 1,643 European ancestry adults from 1,613 families	NA	5p15.2	TRIO	rs17428704-?	NR	6E-6	(Theta power, Cz)	0.16	[0.091-0.229] unit increase	Illumina [527829]	N
695	chr5	14488127	14488128	rs115054458	27777418	Wong ML	2016-10-25	Mol Psychiatry	The PHF21B gene is associated with major depression and modulates the stress response.	Major depressive disorder	203 Mexican American cases, 196 Mexican American controls	NA	5p15.2	TRIO	rs115054458-?	NR	3E-7				Illumina [83898]	N
695	chr5	14505676	14505677	rs56112380	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Intake of total sugars	174,424 European ancestry individuals	NA	5p15.2	TRIO	rs56112380-T	0.01	4E-6		3.62	[2.07-5.17] g/day increase	Affymetrix [10353649] (imputed)	N
696	chr5	14572452	14572453	rs74455974	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (adrenergics, inhalants)	28,880 European ancestry cases, 147,565 European ancestry controls, 5,880 East Asian ancestry cases, 172,846 East Asian ancestry controls	NA	5p15.2		rs74455974-T	NR	1E-10		0.1306	[0.091-0.17] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
696	chr5	14572452	14572453	rs74455974	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (adrenergics, inhalants)	28,880 European ancestry cases, 147,565 European ancestry controls	NA	5p15.2	FAM105A	rs74455974-T	0.0541948	1E-10		0.13056387	[0.091-0.17] unit increase	Affymetrix [7288503] (imputed)	N
696	chr5	14584401	14584402	rs17307658	32180562	Kulyte A	2020-01-25	Mol Metab	Genome-wide association study of adipocyte lipolysis in the GENetics of adipocyte lipolysis (GENiAL) cohort.	Stimulated adipocyte lipolysis	874 European ancestry individuals	NA	5p15.2	NR	rs17307658-A	0.934211	8E-6		0.111	[0.062-0.16] unit decrease	NR [9260588] (imputed)	N
696	chr5	14610133	14610134	rs3845281	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	5p15.2	ANKH	rs3845281-G	0.9039	2E-11		1.08	[1.06-1.10]	Affymetrix, Illumina [~ 27000000] (imputed)	N
696	chr5	14610308	14610309	rs16903574	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	5p15.2	FAM105A	rs16903574-G	0.0760999999999999	1E-10		0.027385704	[0.019-0.036] unit increase	Affymetrix [93095623] (imputed)	N
696	chr5	14610308	14610309	rs16903574	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5p15.2	NR	rs16903574-G	0.0748582	1E-11				Affymetrix, Illumina [19872809] (imputed)	N
696	chr5	14610308	14610309	rs16903574	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	5p15.2	OTULINL	rs16903574-G	0.07	2E-15				NR [> 9500000] (imputed)	N
696	chr5	14610308	14610309	rs16903574	31959851	Olafsdottir TA	2020-01-20	Nat Commun	Eighty-eight variants highlight the role of T cell regulation and airway remodeling in asthma pathogenesis.	Asthma	16,247 European ancestry cases, 346,486 European ancestry controls, 52,942 cases, 355,713 controls	NA	5p15.2	FAM105A, OTULIN, ANKH, TRIO, LOC100130744, MIR4637	rs16903574-G	0.0765	5E-13		1.08947	[1.06-1.12]	Affymetrix [32463443] (imputed)	N
696	chr5	14610308	14610309	rs16903574	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	5p15.2	NR	rs16903574-?	NR	4E-9				Affymetrix [~ 8270000] (imputed)	N
696	chr5	14610308	14610309	rs16903574	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	5p15.2	NR	rs16903574-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
696	chr5	14610308	14610309	rs16903574	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	5p15.2	NR	rs16903574-?	NR	1E-14				Affymetrix [~ 8270000] (imputed)	N
696	chr5	14610308	14610309	rs16903574	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	5p15.2	FAM105A, OTULIN	rs16903574-G	0.076465	4E-12		1.0862118	[1.06-1.11]	Affymetrix [8274727] (imputed)	N
696	chr5	14610308	14610309	rs16903574	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	5p15.2	FAM105A	rs16903574-G	0.07189	8E-13				Affymetrix [15688218] (imputed)	N
696	chr5	14610308	14610309	rs16903574	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (childhood onset)	9,433 British ancestry cases, 318,237 British ancestry controls	NA	5p15.2	FAM105A, TRIO, OTULIN	rs16903574-G	0.077	9E-16		1.236	[1.174-1.302]	Affymetrix [10894596] (imputed)	N
696	chr5	14610308	14610309	rs16903574	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma onset (childhood vs adult)	13,962 European ancestry childhood onset cases, 14,873 European ancestry adult onset cases	31,002 European ancestry childhood onset cases, 16,297 European ancestry adult onset cases	5p15.2	FAM105A	rs16903574-G	0.07	6E-6		1.087	[1.05-1.12]	Affymetrix [9000000] (imputed)	N
696	chr5	14610308	14610309	rs16903574	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	5p15.2	FAM105A	rs16903574-?	NR	1E-23		1.145	[1.12-1.17]	Affymetrix [9000000] (imputed)	N
696	chr5	14610308	14610309	rs16903574	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	5p15.2	FAM105A	rs16903574-G	NR	9E-13		1.098	[1.07-1.12]	Affymetrix [9000000] (imputed)	N
696	chr5	14610308	14610309	rs16903574	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Respiratory diseases	approximately 459,000 European ancestry individuals	NA	5p15.2		rs16903574-?	NR	3E-12				NR [~ 8900000] (imputed)	N
696	chr5	14610308	14610309	rs16903574	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	5p15.2		rs16903574-?	NR	2E-17				NR [~ 8900000] (imputed)	N
696	chr5	14610308	14610309	rs16903574	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	5p15.2		rs16903574-?	NR	2E-9				NR [~ 8900000] (imputed)	N
696	chr5	14610308	14610309	rs16903574	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	5p15.2	FAM105A	rs16903574-G	0.08	1E-12		1.071	[1.05-1.09]	Affymetrix, Illumina [8307659] (imputed)	N
696	chr5	14633911	14633912	rs796632525	34103634	Valette K	2021-06-08	Commun Biol	Prioritization of candidate causal genes for asthma in susceptibility loci derived from UK Biobank.	Asthma	56,167 White-British ancestry cases, 352,255 White-British ancestry controls	NA	5p15.2	OTULINL, OTULIN	rs796632525-A	0.0773742047464591	3E-13		0.09157654	[0.067-0.116] unit increase	Affymetrix [35186738] (imputed)	N
696	chr5	14633911	14633912	rs796632525	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	5p15.2	NR	rs796632525-D	0.077813	5E-14		0.029669	[0.022-0.037] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
696	chr5	14633911	14633912	rs796632525	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	5p15.2	FAM105A	rs796632525-A	0.07343599999999995	3E-17		1.1048568	[1.07960568189716-1.13069872408542]	NR [9572556] (imputed)	N
696	chr5	14633912	14633913	rs528167451	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	5p15.2		rs528167451-A	NR	2E-12		0.0238	[0.017-0.03] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
696	chr5	14633912	14633913	rs528167451	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	5p15.2		rs528167451-A	0.0767560000000001	1E-15		0.03401834	[0.026-0.042] unit increase	Affymetrix [93095623] (imputed)	N
696	chr5	14637274	14637275	rs138114267	32180562	Kulyte A	2020-01-25	Mol Metab	Genome-wide association study of adipocyte lipolysis in the GENetics of adipocyte lipolysis (GENiAL) cohort.	Spontaneous adipocyte lipolysis	856 European ancestry individuals	NA	5p15.2	NR	rs138114267-C	0.979658	6E-6		0.285	[0.16-0.41] unit increase	NR [9260588] (imputed)	N
696	chr5	14647107	14647108	rs3853119	34748635	Miranda JP	2021-11-08	J Clin Endocrinol Metab	Genome-Wide Association Study And Polygenic Risk Scores Of Serum Dheas Levels In A Chilean Children Cohort.	DHEAS levels	788 Hispanic or Latin American individuals	NA	5p15.2	OTULIN	rs3853119-A	0.207	5E-6		0.07	unit increase	Illumina [5510858] (imputed)	N
696	chr5	14647107	14647108	rs3853119	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Non-albumin protein levels	98,538 Japanese ancestry individuals	NA	5p15.2	FAM105A, SNORD141A	rs3853119-?	NR	2E-8		0.02892	[0.019-0.039] unit increase novel	Illumina [6108953] (imputed)	N
696	chr5	14673695	14673696	rs16903631	31930058	Niu LD	2019-11-01	Ann Transl Med	Genome-wide association study of cerebrospinal fluid neurofilament light levels in non-demented elders.	Cerebrospinal fluid neurofilament light levels	263 European ancestry individuals	NA	5p15.2	OTULIN	rs16903631-?	0.1157	5E-7		0.6781	[0.4185-0.9376] unit increase	Illumina [441611]	N
697	chr5	14688416	14688417	rs250438	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Citrate levels	115,068 European ancestry individuals	NA	5p15.2		rs250438-G	0.903124	1E-54		0.106875	[0.093-0.12] unit decrease	NR [11722792] (imputed)	N
697	chr5	14701002	14701003	rs77665773	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	5p15.2	NR	rs77665773-T	0.05889	1E-8		1.074	[1.049-1.1]	Affymetrix [15688218] (imputed)	N
697	chr5	14701002	14701003	rs77665773	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic disease (asthma, hay fever or eczema)	106,772 European ancestry cases, 239,773 European ancestry controls	83,335 cases, 34,934 controls	5p15.2	NR	rs77665773-T	0.05889	3E-10		1.075	[1.052-1.099]	Affymetrix [15688218] (imputed)	N
697	chr5	14748555	14748556	rs153920	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5p15.2		rs153920-?	NR	1E-9				NR [~ 8900000] (imputed)	N
697	chr5	14751304	14751305	rs146886108	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Diabetes mellitus (UKB data field 2443)	21,969 European ancestry cases, 433,048 European ancestry controls	NA	5p15.2		rs146886108-T	0.007268	1E-10		0.39	[0.27-0.51] unit decrease	NR [11842647] (imputed)	N
697	chr5	14751304	14751305	rs146886108	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	5p15.2		rs146886108-T	NR	2E-31		0.1581	[0.13-0.18] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
697	chr5	14751304	14751305	rs146886108	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	5p15.2		rs146886108-T	NR	2E-12		0.1037	[0.075-0.133] unit decrease	Affymetrix, Illumina [20535873] (imputed)	N
697	chr5	14751304	14751305	rs146886108	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Serum phosphate levels	400,159 European ancestry individuals	NA	5p15.2		rs146886108-?	NR	2E-22		0.131514	[0.11-0.16] unit increase	NR [9800000] (imputed)	N
697	chr5	14751304	14751305	rs146886108	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Hemoglobin A1c levels	437,749 European ancestry individuals	NA	5p15.2		rs146886108-?	NR	8E-51		0.172131	[0.15-0.2] unit decrease	NR [9800000] (imputed)	N
697	chr5	14751304	14751305	rs146886108	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Blood glucose levels	400,458 European ancestry individuals	NA	5p15.2		rs146886108-?	NR	1E-15		0.105168	[0.079-0.132] unit decrease	NR [9800000] (imputed)	N
697	chr5	14751304	14751305	rs146886108	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	5p15.2	NR	rs146886108-T	NR	3E-18		0.1313	[0.1-0.16] unit increase	Affymetrix [9000000] (imputed)	N
697	chr5	14751304	14751305	rs146886108	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	5p15.2	NR	rs146886108-T	NR	1E-30		0.1681	[0.14-0.2] unit decrease	Affymetrix [9000000] (imputed)	N
697	chr5	14751304	14751305	rs146886108	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	5p15.2	NR	rs146886108-T	NR	9E-13		0.1073	[0.078-0.137] unit decrease	Affymetrix [9000000] (imputed)	N
697	chr5	14751304	14751305	rs146886108	32589924	Bi W	2020-06-23	Am J Hum Genet	A Fast and Accurate Method for Genome-Wide Time-to-Event Data Analysis and Its Application to UK Biobank.	Type 2 diabetes (time to event)	18,557 British ancestry cases, 264,314 British ancestry controls	NA	5p15.2	ANKH	rs146886108-?	NR	4E-8				NR [~ 24000000] (imputed)	N
697	chr5	14751304	14751305	rs146886108	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	5p15.2	NR	rs146886108-C	0.994	2E-31		0.39	[0.32-0.46] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
697	chr5	14751304	14751305	rs146886108	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	5p15.2	NR	rs146886108-C	0.9942	2E-31		0.3814	[0.32-0.45] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
697	chr5	14751304	14751305	rs146886108	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	5p15.2	ANKH	rs146886108-C	0.9938	8E-13		1.41	[1.28-1.55]	Affymetrix, Illumina [~ 27000000] (imputed)	N
697	chr5	14751304	14751305	rs146886108	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	21,147 European ancestry cases, 434,460 European ancestry controls	NA	5p15.2	ANKH	rs146886108-C	0.99286	4E-9		1.4084507	[1.27-1.59]	NR [10849711] (imputed)	N
697	chr5	14751304	14751305	rs146886108	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes (adjusted for BMI)	up to 48,286 European ancestry cases, up to 250,671 European ancestry controls	NA	5p15.2	ANKH	rs146886108-C	0.995	1E-7		1.28	[1.14-1.43]	Affymetrix, Illumina [247470]	N
697	chr5	14751304	14751305	rs146886108	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes (adjusted for BMI)	48,286 European ancestry cases, 250,671 European ancestry controls, 33,126 African American, East Asian, Hispanic/Latino or South Asian cases, 120,161 African American, East Asian, Hispanic/Latino or South Asian controls	NA	5p15.2	ANKH	rs146886108-C	0.996	4E-7		1.27	[1.13-1.41]	Affymetrix, Illumina [247470]	N
697	chr5	14751304	14751305	rs146886108	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes	up to 48,286 European ancestry cases, up to 250,671 European ancestry controls	NA	5p15.2	ANKH	rs146886108-C	0.995	2E-7		1.29	[1.15-1.45]	Affymetrix, Illumina [247470]	N
697	chr5	14751304	14751305	rs146886108	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes	48,286 European ancestry cases, 250,671 European ancestry controls, 33,126 African American, East Asian, Hispanic/Latino or South Asian cases, 120,161 African American, East Asian, Hispanic/Latino or South Asian controls	NA	5p15.2	ANKH	rs146886108-C	0.996	1E-7		1.29	[1.16-1.45]	Affymetrix, Illumina [247470]	N
697	chr5	14752849	14752850	rs17250963	24204828	Zheng JS	2013-10-28	PLoS One	Genome-wide contribution of genotype by environment interaction to variation of diabetes-related traits.	Homeostasis model assessment of insulin resistance (dietary factor interaction)	820 European ancestry individuals	NA	5p15.2	ANKH	rs17250963-A	0.217	7E-6	(Protein (control))			Affymetrix [590000]	N
697	chr5	14753744	14753745	rs17250977	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	5p15.2	NR	rs17250977-G	NR	1E-10		0.0412	[0.029-0.054] unit decrease	Affymetrix [9000000] (imputed)	N
697	chr5	14753744	14753745	rs17250977	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	5p15.2	ANKH	rs17250977-G	0.0376	2E-11		1.12	[1.09-1.16]	Affymetrix, Illumina [~ 27000000] (imputed)	N
697	chr5	14764933	14764934	rs706293	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels (BMI interaction)	up to 15,007 European ancestry male individuals, up to 16,943 European ancestry female individuals	NA	5p15.2	ANKH	rs706293-G	0.63	2E-6	(Women)	0.0110638635	[0.0065-0.0156] unit decrease	Affymetrix, Illumina [at least 188473] (imputed)	N
697	chr5	14768091	14768092	rs6885132	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	5p15.2		rs6885132-G	NR	5E-9		0.0449	[0.03-0.06] unit decrease	Affymetrix, Illumina [25845091] (imputed)	N
697	chr5	14768091	14768092	rs6885132	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	5p15.2	ANKH	rs6885132-C	0.556	3E-9		1.04	[1.03-1.06]	Affymetrix, Illumina [11800000] (imputed)	N
697	chr5	14768091	14768092	rs6885132	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Type 2 diabetes	approximately 459,000 European ancestry individuals	NA	5p15.2		rs6885132-?	NR	3E-13				NR [~ 8900000] (imputed)	N
697	chr5	14768091	14768092	rs6885132	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	5p15.2	ANKH	rs6885132-C	0.904	2E-8		1.07	[1.04-1.09]	Affymetrix, Illumina [~ 27000000] (imputed)	N
697	chr5	14768765	14768766	rs76549217	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	5p15.2	NR	rs76549217-T	NR	1E-11		0.0475	[0.034-0.061] unit increase	Affymetrix [9000000] (imputed)	N
697	chr5	14768765	14768766	rs76549217	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	5p15.2	ANKH	rs76549217-T	0.0295	3E-10		1.14	[1.10-1.19]	Affymetrix, Illumina [~ 27000000] (imputed)	N
697	chr5	14773316	14773317	rs116017108	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5p15.2	NR	rs116017108-A	0.0122	8E-12	(PRPS1)	0.04168	NR unit increase	Illumina [1671387] (imputed)	N
697	chr5	14773316	14773317	rs116017108	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5p15.2	NR	rs116017108-A	0.0122	1E-10	(PRPS2)	0.1552	NR unit increase	Illumina [1671387] (imputed)	N
697	chr5	14799936	14799937	rs114867704	32180562	Kulyte A	2020-01-25	Mol Metab	Genome-wide association study of adipocyte lipolysis in the GENetics of adipocyte lipolysis (GENiAL) cohort.	Stimulated adipocyte lipolysis	874 European ancestry individuals	NA	5p15.2	NR	rs114867704-C	0.970658	7E-7		0.222	[0.14-0.31] unit decrease	NR [9260588] (imputed)	N
697	chr5	14800415	14800416	rs258223	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	5p15.2		rs258223-?	NR	6E-8				NR [~ 8900000] (imputed)	N
697	chr5	14800675	14800676	rs10066322	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	5p15.2	NR	rs10066322-A	NR	4E-11		0.0269	[0.019-0.035] unit decrease	Affymetrix [9000000] (imputed)	N
698	chr5	14814882	14814883	rs31916	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	23,963 European ancestry cases, 306,942 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	43,254 European ancestry cases, 1,471,118 European ancestry controls	5p15.2	ANKH	rs31916-A	NR	8E-19		0.0701	unit increase	Illumina [15409056] (imputed)	N
698	chr5	14814882	14814883	rs31916	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Intraocular pressure	101,939 European ancestry cases	NA	5p15.2	NR	rs31916-A		4E-10		0.1	[0.061-0.139] unit increase	NR [NR]	N
698	chr5	14820416	14820417	rs368503	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	5p15.2	ANKH	rs368503-A	0.72	5E-15		0.111	[0.084-0.138] unit increase	Affymetrix, Illumina [NR] (imputed)	N
698	chr5	14820926	14820927	rs31918	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Intraocular pressure	133,492 European ancestry individuals	NA	5p15.2	ANKH	rs31918-?	NR	1E-12		0.101	[0.073-0.129] unit decrease	Affymetrix, Illumina [up to 40000000] (imputed)	N
698	chr5	14820926	14820927	rs31918	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Glaucoma	11,018 European ancestry cases, 126,068 European ancestry controls	NA	5p15.2	ANKH	rs31918-?	NR	6E-10		1.1141591	[1.08-1.15]	Affymetrix [up to 40000000] (imputed)	N
698	chr5	14837331	14837332	rs76325372	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Intraocular pressure	133,492 European ancestry individuals	NA	5p15.2	ANKH	rs76325372-A	0.73	3E-12				Affymetrix, Illumina [8002429] (imputed)	N
698	chr5	14837331	14837332	rs76325372	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Glaucoma	7,947 British ancestry cases, 119,318 British ancestry controls	NA	5p15.2	ANKH	rs76325372-A	0.73	2E-8		1.11	NR	Affymetrix [at least 8002429] (imputed)	N
698	chr5	14837331	14837332	rs76325372	29891935	Choquet H	2018-06-11	Nat Commun	A multiethnic genome-wide association study of primary open-angle glaucoma identifies novel risk loci.	Glaucoma (primary open-angle)	10,523 European ancestry cases, 203,579 European ancestry controls, 411 Hispanic cases, 4,778 Hispanic controls, 463 East Asian ancestry cases, 4,907 East Asian ancestry controls, 298 African American cases, 1,549 African American controls, 204 South Asian ancestry cases, 4,916 South Asian ancestry controls, 272 African British cases, 4,831 African British controls, 144 mixed ancestry cases, 3,427 mixed ancestry controls	NA	5p15.2	ANKH	rs76325372-A	NR	7E-13		1.12	1.08-1.15	Affymetrix [at least 665500] (imputed)	N
698	chr5	14847330	14847331	rs1061813	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	5p15.2	ANKH	rs1061813-G	0.462880801655686	3E-9		0.0429	[0.029-0.057] unit increase	NR [5035015] (imputed)	N
698	chr5	14851093	14851094	rs61394862	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Glaucoma	11,018 European ancestry cases, 126,068 European ancestry controls	NA	5p15.2	ANKH	rs61394862-T	NR	4E-10		1.1111112	[1.08-1.16]	Affymetrix [up to 40000000] (imputed)	N
698	chr5	14867947	14867948	rs2921604	27005778	Kettunen J	2016-03-23	Nat Commun	Genome-wide study for circulating metabolites identifies 62 loci and reveals novel systemic effects of LPA.	Metabolite levels (small molecules and protein measures)	2,118 Erasmus Rucphen (founder/genetic isolate), 22,807 European ancestry individuals	NA	5p15.2	ANHK	rs2921604-C	0.44	4E-25	(Citrate)	0.1	[0.08-0.12] unit increase	Affymetrix, Illumina, Perlegen [12133295] (imputed)	N
698	chr5	14870605	14870606	rs10073421	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Citrate levels	115,068 European ancestry individuals	NA	5p15.2		rs10073421-T	0.538728	4E-125		0.0965773	[0.089-0.105] unit decrease	NR [11722792] (imputed)	N
698	chr5	14876568	14876569	rs835154	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	5p15.2	ANKH	rs835154-A	0.55	1E-10	(citrate)	0.012	[0.0081-0.0159] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
698	chr5	14877780	14877781	rs835151	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Skin reflectance (Melanin index)	720 South Asian ancestry individuals		5p15.2	NR	rs835151-A	NR	1E-6	(conditioned on rs1426654)	0.821533	[0.49-1.16] unit increase	Affymetrix, Illumina [at least 398118] (imputed)	N
699	chr5	14957846	14957847	rs835115	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5p15.2		rs835115-?	NR	6E-13				NR [~ 8900000] (imputed)	N
699	chr5	15043609	15043610	rs142669849	30942860	Shin J	2019-04-03	J Clin Endocrinol Metab	Novel genetic locus of visceral fat and systemic inflammation.	Visceral fat	1589 French-Canadian ancestry individuals	NA	5p15.1	Intergenic	rs142669849-A	NR	8E-6	(adjusted for total body fat)	0.162	[0.091-0.233] unit increase	Illumina [8511049] (imputed)	N
699	chr5	15052539	15052540	rs73052282	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mononucleosis	17,457 European ancestry cases, 68,446 European ancestry controls	NA	5p15.1	NR	rs73052282-?	NR	4E-6		1.0058	[0.6-1.41] unit increase	Illumina [at least 560000] (imputed)	N
700	chr5	15113738	15113739	rs77626951	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	5p15.1	intergenic	rs77626951-G	0.010000000000000009	2E-6		1.3078734		NR [9372253] (imputed)	N
701	chr5	15285413	15285414	rs745978	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral fat	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	5p15.1	FBXL7	rs745978-C	0	7E-6	(men)			Affymetrix, Illumina [2500000] (imputed)	N
701	chr5	15312552	15312553	rs303343	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	5p15.1	MIR4637, FBXL7	rs303343-C		4E-6		0.258	unit decrease	Affymetrix [at least 2696785] (imputed)	N
701	chr5	15312552	15312553	rs303343	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	5p15.1	MIR4637, FBXL7	rs303343-C		4E-9		0.229	unit decrease	Affymetrix [at least 2696785] (imputed)	N
701	chr5	15312552	15312553	rs303343	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	5p15.1	MIR4637, FBXL7	rs303343-C		2E-6		0.122	unit decrease	Affymetrix [at least 2696785] (imputed)	N
702	chr5	15364483	15364484	rs1447276	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	5p15.1	LOC391741	rs1447276-A	0.116	2E-6	(Fat mass )	0.03	[NR] % increase	Illumina [899892]	N
703	chr5	15524469	15524470	rs80333777	28736931	Rotroff DM	2017-07-24	Clin Pharmacol Ther	Genetic Variants in HSD17B3, SMAD3, and IPO11 Impact Circulating Lipids in Response to Fenofibrate in Individuals With Type 2 Diabetes.	Total cholesterol change in response to fenofibrate in statin-treated type 2 diabetes	781 European ancestry individuals, 138 African American ancestry individuals, 345 unknown ancestry individuals		5p15.1	FBXL7	rs80333777-?	NR	5E-7		0.02	unit increase	Affymetrix, Illumina [8129838] (imputed)	N
703	chr5	15582004	15582005	rs1978633	22566634	Benjamin DJ	2012-05-07	Proc Natl Acad Sci U S A	The genetic architecture of economic and political preferences.	Economic and political preferences (feminism/equality)	9,617 European ancestry individuals	NA	5p15.1	FBXL7	rs1978633-T	NR	5E-6		0.09	[0.051-0.129] unit decrease	Illumina [628922]	N
704	chr5	15602060	15602061	rs3762978	33190678	Ho YYW	2020-10-01	Twin Res Hum Genet	Comparison of Genome-Wide Association Scans for Quantitative and Observational Measures of Human Hair Curvature.	Hair curvature (quantitative)	2,225 European ancestry individuals	NA	5p15.1	NR	rs3762978-?		5E-7		0.011	[0.0068-0.0152] unit decrease	Illumina [7533529] (imputed)	N
704	chr5	15607447	15607448	rs16867528	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	5p15.1	LOC402198, LOC391741	rs16867528-A	0.01	2E-8		7.39	[3.29-16.6]	Illumina [1556551]	N
704	chr5	15616675	15616676	rs76684306	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	5p15.1	intergenic	rs76684306-G	0.011	1E-7		6.56	[2.97-14.49]	Illumina [1556551]	N
704	chr5	15618180	15618181	rs12659622	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	5p15.1	FBXL7	rs12659622-A	0.063	9E-7	(Total T3 )	0.03	[NR] ng/dL increase	Illumina [899892]	N
704	chr5	15652557	15652558	rs7721607	30420678	Tasa T	2018-11-12	Eur J Hum Genet	Genetic variation in the Estonian population: pharmacogenomics study of adverse drug effects using electronic health records.	Adverse response to drug	16,226 European ancestry individuals	NA	5p15.1	FBXL7	rs7721607-A	0.165	3E-7	(Angiotensin II antagonists, plain [C09CA])	2.21		Illumina [16500000] (imputed)	N
704	chr5	15669966	15669967	rs75002042	26339675	Tosto G	2015-06-18	Ann Clin Transl Neurol	F-box/LRR-repeat protein 7 is genetically associated with Alzheimer's disease.	Alzheimer's disease (late onset)	2,451 Caribbean Hispanic cases, 2,063 Caribbean Hispanic controls	550 Caribbean Hispanic cases, 236 Caribbean Hispanic controls	5p15.1	FBXL7	rs75002042-T	0.92	5E-8	(adjusted for APOE)	1.59	[1.33-1.85]	Affymetrix, Illumina [8837542] (imputed)	N
704	chr5	15681070	15681071	rs4702099	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	5p15.1	BCL11A	rs4702099-?		5E-11				NR [7428630] (imputed)	N
704	chr5	15690529	15690530	rs6554893	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	5p15.1		rs6554893-G	0.41	1E-26		10.68	z score increase	Affymetrix [9061022] (imputed)	N
704	chr5	15725957	15725958	rs114039181	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	5p15.1	NR	rs114039181-G	0.99	5E-7		1.07	[-0.9684-3.1084]	Affymetrix [at least 143006] (imputed)	N
705	chr5	15734172	15734173	rs7713553	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 3)	19,670 European ancestry individuals	NA	5p15.1		rs7713553-?	NR	2E-11				NR [9705931] (imputed)	N
705	chr5	15735029	15735030	rs4582274	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	5p15.1		rs4582274-G	0.41	8E-11		6.49	z score increase	Affymetrix [9061022] (imputed)	N
705	chr5	15745336	15745337	rs79066979	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	5p15.1	NR	rs79066979-?		3E-8	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
705	chr5	15747813	15747814	rs2937075	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	5p15.1		rs2937075-G	NR	3E-8		0.0107	[0.007-0.0144] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
705	chr5	15747865	15747866	rs924455	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	5p15.1	NR	rs924455-T	0.4571	1E-11				NR [9056863] (imputed)	N
705	chr5	15757553	15757554	rs2937071	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (min-P)	26,502 European ancestry individuals	NA	5p15.1	KCNN3, DCST2, DCST1, ADAM15, EFNA4, EFNA3, EFNA1, SLC50A1, DPM3, KRTCAP2, RP11-201K10.3, TRIM46, MUC1, THBS3, MTX1, GBA, FAM189B, SCAMP3, CLK2, HCN3, PKLR, FDPS, RUSC1, ASH1L, MSTO1, YY1AP1, DAP3, GON4L, SYT11, RIT1, KIAA0907, RXFP4, ARHGEF2, LMNA	rs2937071-?		9E-10				NR [7428630] (imputed)	N
705	chr5	15757553	15757554	rs2937071	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (min-P)	26,502 European ancestry individuals	NA	5p15.1	SLC45A3, NUCKS1, AC119673.1, RAB7L1, SLC41A1, PM20D1	rs2937071-?		3E-9				NR [7428630] (imputed)	N
705	chr5	15757553	15757554	rs2937071	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	5p15.1	FBXL7	rs2937071-?		9E-10				NR [7428630] (imputed)	N
705	chr5	15757569	15757570	rs61026653	33888516	Zheng T	2021-04-22	Gut	Genome-wide analysis of 944 133 individuals provides insights into the etiology of haemorrhoidal disease.	Haemorrhoidal disease	218,920 European ancestry cases, 725,213 European ancestry controls	NA	5p15.1	FBXL7	rs61026653-?	0.13880000000000003	8E-9		0.97	[0.96-0.98]	Affymetrix, Illumina [8494288] (imputed)	N
705	chr5	15763180	15763181	rs1875215	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	5p15.1		rs1875215-A	0.43	1E-10		6.45	z score increase	Affymetrix [9061022] (imputed)	N
705	chr5	15783499	15783500	rs16867713	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	5p15.1	FBXL7, LOC391741, 11-Mar	rs16867713-G	0.01	7E-6		5.83	[2.45-13.86]	Illumina [1556551]	N
705	chr5	15783595	15783596	rs10044254	24486069	Park HW	2014-01-31	J Allergy Clin Immunol	Genetic predictors associated with improvement of asthma symptoms in response to inhaled corticosteroids.	Asthma (corticosteroid response)	124 European ancestry individuals	297 European ancestry individuals	5p15.1	FBXL7	rs10044254-?	0.18	9E-8		1.19	[NR] unit increase	Illumina [440862]	N
705	chr5	15802237	15802238	rs193141495	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	5p15.1	FBXL7	rs193141495-A	0.003	4E-6		0.155	NR unit decrease	Illumina [NR] (imputed)	N
705	chr5	15826466	15826467	rs147776718	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	5p15.1	FBXL7	rs147776718-A	0.003	1E-6		0.156	NR unit decrease	Illumina [NR] (imputed)	N
706	chr5	15922693	15922694	rs186968760	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	5p15.1	FBXL7	rs186968760-A	0.003	4E-6		0.14	NR unit decrease	Illumina [NR] (imputed)	N
707	chr5	16005776	16005777	rs184697115	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial lung adenocarcinoma	775 European ancestry cases, 31,563 European ancestry controls	NA	5p15.1	NR	rs184697115-G	0.008	1E-6		4.84	[2.56-9.16]	Illumina [8672852] (imputed)	N
707	chr5	16023311	16023312	rs7718330	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	5p15.1	NR	rs7718330-?	NR	5E-6				Affymetrix [NR]	N
707	chr5	16038101	16038102	rs1039443	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	5p15.1	NR	rs1039443-C	0.105031482310793	8E-6	(IGP50)	0.2223	[0.12-0.32] unit decrease	Illumina [~ 2500000] (imputed)	N
707	chr5	16055288	16055289	rs76504268	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	5p15.1	NR	rs76504268-A	NR	7E-6	(G_Faecalitalea_HB)	1.49502	[0.84-2.15] unit increase	Illumina [7711310] (imputed)	N
708	chr5	16157355	16157356	rs79939184	32724131	Li QS	2020-07-28	Sci Rep	Genome-wide association study and polygenic risk score analysis of esketamine treatment response.	Response to esketamine in treatment resistant depression	255 European ancestry individuals	NA	5p15.1	NR	rs79939184-?		7E-6		38.3288	[21.76-54.9] unit decrease	NR [NR] (imputed)	N
708	chr5	16187423	16187424	rs342563	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	5p15.1	NR	rs342563-G	0.5	4E-9		0.00641674	[0.0043-0.0085] unit decrease	NR [9732723] (imputed)	N
708	chr5	16187527	16187528	rs13162653	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	5p15.1	intergenic	rs13162653-G	0.55	5E-7	(EA)	1.010101	[0.99-1.03] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
708	chr5	16187527	16187528	rs13162653	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	46,785 European ancestry cases, 42,892 European ancestry controls	NA	5p15.1	intergenic	rs13162653-G	0.55	2E-6		1.0526316		Affymetrix, Illumina [~ 14000000] (imputed)	N
708	chr5	16187527	16187528	rs13162653	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	15,748 European ancestry cases, 18,084 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls	5p15.1	intergenic	rs13162653-G	0.55	1E-10		1.0526316	[1.03-1.08]	Affymetrix, Illumina [~ 11600000] (imputed)	N
708	chr5	16233618	16233619	rs4702131	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	5p15.1	NR	rs4702131-C	0.5612	1E-11	(EA)	0.0424	[0.03-0.055] unit decrease	Illumina [~ 11800000] (imputed)	N
709	chr5	16254309	16254310	rs11133838	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Ruminococcus belonging to family Erysipelotrichaceae)	1,068 Japanese ancestry individuals	NA	5p15.1	intergenic	rs11133838-G	0.18	4E-6		0.237	[0.14-0.34] unit increase	Illumina [6380737] (imputed)	N
709	chr5	16263044	16263045	rs139195876	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		5p15.1	Intergenic	rs139195876-A	0.99	2E-6	(liability model)	0.43	[0.25-0.61] unit decrease	NR [19725427] (imputed)	N
709	chr5	16300092	16300093	rs1899227	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	5p15.1	NR	rs1899227-?	NR	2E-9				Affymetrix [NR]	N
709	chr5	16367637	16367638	rs6893207	26174813	Alemany S	2015-07-14	Am J Med Genet B Neuropsychiatr Genet	New suggestive genetic loci and biological pathways for attention function in adult attention-deficit/hyperactivity disorder.	Attention function in attention deficit hyperactive disorder	479 European ancestry adult cases	NA	5p15.1	ZNF622	rs6893207-G	0.021	3E-6	(HRTSE)	2.88	[1.66-4.1] unit decrease	Illumina [799713]	N
710	chr5	16388258	16388259	rs17706273	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (genus Tyzzerella3 id.11335)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	5p15.1		rs17706273-T	NR	6E-7		4.9951777	z score decrease	Affymetrix, Illumina [NR] (imputed)	N
710	chr5	16422943	16422944	rs2596389	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris color (b* coordinate)	329 South Asian ancestry individuals		5p15.1	RP1-167G20.1	rs2596389-A	0.031	6E-6		1.592	[0.92-2.27] unit decrease	Illumina [640625] (imputed)	N
710	chr5	16484851	16484852	rs74469597	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental longevity (combined parental age at death)	45,627 middle-aged British individuals	NA	5p15.1	NR	rs74469597-?	NR	7E-6		0.0613	[0.035-0.088] unit increase	Affymetrix [9658292] (imputed)	N
710	chr5	16509182	16509183	rs41117	33937227	Zhang W	2021-04-16	Front Cell Dev Biol	Detecting Gene-Environment Interaction for Maternal Exposures Using Case-Parent Trios Ascertained Through a Case With Non-Syndromic Orofacial Cleft.	Orofacial cleft x maternal periconceptional multivitamin use interaction (1df)	661 European ancestry exposed trios, 328 European ancestry unexposed trios, 293 Asian ancestry exposed trios, 805 Asian ancestry unexposed trios, 260 Latin American exposed trios, 140 Latin American unexposed trios	NA	5p15.1	RETREG1	rs41117-G	NR	4E-7		1.585	[1.327-1.894]	Illumina [up to 6762077] (imputed)	N
711	chr5	16572152	16572153	rs78314670	32232851	Deguchi H	2020-03-30	Br J Haematol	Novel exomic rare variants associated with venous thrombosis.	Venous thromboembolism	104 European ancestry cases, 211 European ancestry controls	NA	5p15.1	FAM134B	rs78314670-?	9.0E-4	3E-7				Illumina [308166]	N
711	chr5	16582359	16582360	rs17650599	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5p15.1	MYO10	rs17650599-?	NR	5E-6	(carnosine)	0.5146534	[0.29-0.74] unit decrease	Affymetrix [at least 2500000] (imputed)	N
711	chr5	16613289	16613290	rs71609316	30694715	Sakornsakolpat P	2019-01-29	Am J Respir Cell Mol Biol	Genome-Wide Association Analysis of Single Breath Diffusing Capacity of Carbon Monoxide (DLCO).	Diffusing capacity of carbon monoxide	2,584 European ancestry individuals with chronic obstructive pulmonary disease, 3,002 European ancestry healthy individuals, 343 African American individuals with chronic obstructive pulmonary disease, 1,006 African American healthy individuals	NA	5p15.1	RETREG1	rs71609316-C	0.05	9E-6	(EA)	0.2	0.11-0.29 unit increase	Illumina [NR] (imputed)	N
711	chr5	16617921	16617922	rs75869162	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	Urate levels	2077 British ancestry individuals from 6863 families.	NA	5p15.1	FAM134B	rs75869162-A	0.0054	2E-8				Illumina [24111857] (imputed)	N
711	chr5	16634558	16634559	rs11738146	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	5p15.1	RP11-260E18.1	rs11738146-A	0.250244	2E-10		0.016740263	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
711	chr5	16634558	16634559	rs11738146	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5p15.1	NR	rs11738146-A	0.244156	8E-11				Affymetrix, Illumina [23472807] (imputed)	N
711	chr5	16634558	16634559	rs11738146	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	5p15.1	NR	rs11738146-A	0.249014	1E-13		0.017126	[0.013-0.022] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
712	chr5	16664768	16664769	rs26742	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin I concentration	12,730 European ancestry individuals, 1,606 African American individuals	NA	5p15.1		rs26742-?	NR	9E-7		0.06	[0.036-0.084] unit decrease	Affymetrix, Illumina [6937320] (imputed)	N
712	chr5	16664768	16664769	rs26742	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin I concentration	12,730 European ancestry individuals	NA	5p15.1		rs26742-?	NR	3E-7		0.06	[0.036-0.084] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
712	chr5	16705914	16705915	rs3849106	29160301	Fabbri C	2017-11-21	Pharmacogenomics J	New insights into the pharmacogenomics of antidepressant response from the GENDEP and STAR*D studies: rare variant analysis and high-density imputation.	Response to antidepressants (symptom remission)	2,145 European ancestry individuals	NA	5p15.1	MYO10	rs3849106-?	NR	3E-6		1.4394	NR	Affymetrix, Illumina [7062950] (imputed)	N
713	chr5	16784018	16784019	rs25904	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5p15.1	NR	rs25904-G	0.02613	1E-8	(MT1H)	0.04115	NR unit increase	Illumina [1671387] (imputed)	N
713	chr5	16804979	16804980	rs13361131	29738550	de Oliveira Otto MC	2018-05-08	PLoS One	Genome-wide association meta-analysis of circulating odd-numbered chain saturated fatty acids: Results from the CHARGE Consortium.	Circulating odd-numbered chain saturated fatty acid levels (C17:0)	6,016 European ancestry individuals	NA	5p15.1	MYO10	rs13361131-?	NR	1E-8		0.1346	[0.088-0.182] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
713	chr5	16804979	16804980	rs13361131	29738550	de Oliveira Otto MC	2018-05-08	PLoS One	Genome-wide association meta-analysis of circulating odd-numbered chain saturated fatty acids: Results from the CHARGE Consortium.	Circulating odd-numbered chain saturated fatty acid levels (C15:0+C17:0)	6,016 European ancestry individuals	NA	5p15.1	NR	rs13361131-?	NR	7E-7		0.1598	[0.096-0.223] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
713	chr5	16807785	16807786	rs1872004	30631343	Rolfe S	2018-12-18	Front Genet	Associations Between Genetic Data and Quantitative Assessment of Normal Facial Asymmetry.	Normal facial asymmetry (deformation magnitude)	3,186 European ancestry individuals	NA	5p15.1	MYO10	rs1872004-?	NR	2E-6				Illumina [747780]	N
713	chr5	16812637	16812638	rs17651119	23377640	GENDEP Investigators	2013-02-01	Am J Psychiatry	Common genetic variation and antidepressant efficacy in major depressive disorder: a meta-analysis of three genome-wide pharmacogenetic studies.	Major depressive disorder	Up to 2,256 European ancestry cases	NA	5p15.1	MYO10	rs17651119-C	0.99	2E-8	(% improvement - 12 weeks)	3.1807	[2.77-3.59]	Affymetrix, Illumina [1200000] (imputed)	N
713	chr5	16836004	16836005	rs9312937	34791234	Tyrmi JS	2021-11-13	Hum Reprod	Leveraging Northern European population history: novel low-frequency variants for polycystic ovary syndrome.	Polycystic ovary syndrome (adjusted for age)	797 European ancestry cases, 140,558 European ancestry controls	2,812 European ancestry cases, 229,788 European ancestry controls	5p15.1	MYO10	rs9312937-C	0.4458	2E-8		1.16	[1.10-1.22]	NR [24154061] (imputed)	N
713	chr5	16836004	16836005	rs9312937	34791234	Tyrmi JS	2021-11-13	Hum Reprod	Leveraging Northern European population history: novel low-frequency variants for polycystic ovary syndrome.	Polycystic ovary syndrome (adjusted for age and BMI)	482 European ancestry cases, 91,631 European ancestry controls	2,137 European ancestry cases, 68,690 European ancestry controls	5p15.1	MYO10	rs9312937-C	0.4458	3E-6		1.15	[1.08-1.22]	NR [24481103] (imputed)	N
713	chr5	16836004	16836005	rs9312937	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	5p15.1		rs9312937-?	NR	5E-10				NR [~ 8900000] (imputed)	N
713	chr5	16851244	16851245	rs17614137	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5p15.1	FAM134B	rs17614137-?	NR	1E-6	(inositol)	0.6674161	[0.4-0.93] unit decrease	Affymetrix [at least 2500000] (imputed)	N
713	chr5	16852733	16852734	rs7719940	29738550	de Oliveira Otto MC	2018-05-08	PLoS One	Genome-wide association meta-analysis of circulating odd-numbered chain saturated fatty acids: Results from the CHARGE Consortium.	Circulating odd-numbered chain saturated fatty acid levels (C17:0)	6,016 European ancestry individuals	NA	5p15.1	NR	rs7719940-?	NR	1E-6		0.008	[0.0041-0.0119] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
713	chr5	16852733	16852734	rs7719940	29738550	de Oliveira Otto MC	2018-05-08	PLoS One	Genome-wide association meta-analysis of circulating odd-numbered chain saturated fatty acids: Results from the CHARGE Consortium.	Circulating odd-numbered chain saturated fatty acid levels (C15:0+C17:0)	6,016 European ancestry individuals	NA	5p15.1	NR	rs7719940-?	NR	7E-8		0.0148	[0.0095-0.0201] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
713	chr5	16854704	16854705	rs11133865	29738550	de Oliveira Otto MC	2018-05-08	PLoS One	Genome-wide association meta-analysis of circulating odd-numbered chain saturated fatty acids: Results from the CHARGE Consortium.	Circulating odd-numbered chain saturated fatty acid levels (C17:0)	6,016 European ancestry individuals	NA	5p15.1	NR	rs11133865-?	NR	4E-6		0.0074	[0.0043-0.0105] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
713	chr5	16854704	16854705	rs11133865	29738550	de Oliveira Otto MC	2018-05-08	PLoS One	Genome-wide association meta-analysis of circulating odd-numbered chain saturated fatty acids: Results from the CHARGE Consortium.	Circulating odd-numbered chain saturated fatty acid levels (C15:0+C17:0)	6,016 European ancestry individuals	NA	5p15.1	NR	rs11133865-?	NR	3E-7		0.014	[0.0087-0.0193] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
713	chr5	16856198	16856199	rs7736840	29738550	de Oliveira Otto MC	2018-05-08	PLoS One	Genome-wide association meta-analysis of circulating odd-numbered chain saturated fatty acids: Results from the CHARGE Consortium.	Circulating odd-numbered chain saturated fatty acid levels (C17:0)	6,016 European ancestry individuals	NA	5p15.1	NR	rs7736840-?	NR	2E-6		0.0075	[0.0036-0.0114] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
713	chr5	16856198	16856199	rs7736840	29738550	de Oliveira Otto MC	2018-05-08	PLoS One	Genome-wide association meta-analysis of circulating odd-numbered chain saturated fatty acids: Results from the CHARGE Consortium.	Circulating odd-numbered chain saturated fatty acid levels (C15:0+C17:0)	6,016 European ancestry individuals	NA	5p15.1	NR	rs7736840-?	NR	2E-7		0.0139	[0.0086-0.0192] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
713	chr5	16858220	16858221	rs17651415	29738550	de Oliveira Otto MC	2018-05-08	PLoS One	Genome-wide association meta-analysis of circulating odd-numbered chain saturated fatty acids: Results from the CHARGE Consortium.	Circulating odd-numbered chain saturated fatty acid levels (C17:0)	6,016 European ancestry individuals	NA	5p15.1	NR	rs17651415-?	NR	9E-7		0.0112	[0.0073-0.0151] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
713	chr5	16858220	16858221	rs17651415	29738550	de Oliveira Otto MC	2018-05-08	PLoS One	Genome-wide association meta-analysis of circulating odd-numbered chain saturated fatty acids: Results from the CHARGE Consortium.	Circulating odd-numbered chain saturated fatty acid levels (C15:0+C17:0)	6,016 European ancestry individuals	NA	5p15.1	NR	rs17651415-?	NR	3E-7		0.0197	[0.012-0.027] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
713	chr5	16858281	16858282	rs2625206	29738550	de Oliveira Otto MC	2018-05-08	PLoS One	Genome-wide association meta-analysis of circulating odd-numbered chain saturated fatty acids: Results from the CHARGE Consortium.	Circulating odd-numbered chain saturated fatty acid levels (C15:0+C17:0)	6,016 European ancestry individuals	NA	5p15.1	NR	rs2625206-?	NR	3E-7		0.0128	[0.0079-0.0177] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
713	chr5	16859463	16859464	rs73062921	30850646	Tziotzios C	2019-03-08	Nat Commun	Genome-wide association study in frontal fibrosing alopecia identifies four susceptibility loci including HLA-B*07:02.	Frontal fibrosing alopecia	1,016 European ancestry cases, 4,145 European ancestry controls		5p15.1	NR	rs73062921-A	0.113	9E-6		1.41	[1.21-1.64]	Illumina [~ 8000000] (imputed)	N
713	chr5	16882089	16882090	rs16869212	28044437	McDonald MN	2017-01-02	J Cachexia Sarcopenia Muscle	Body mass index change in gastrointestinal cancer and chronic obstructive pulmonary disease is associated with Dedicator of Cytokinesis 1.	Body mass index (change over time) in lung cancer or chronic obstructive pulmonary disease	112 lung cancer cases, 237 COPD cases	NA	5p15.1	MYO10	rs16869212-?		9E-6		0.079	[0.076-0.082] unit decrease	Affymetrix [418365]	N
713	chr5	16893883	16893884	rs2560850	31830031	Chernus JM	2019-12-12	PLoS Genet	A candidate gene analysis and GWAS for genes associated with maternal nondisjunction of chromosome 21.	Maternal nondisjunction of chromosome 21 (MII error vs fathers)	157 mothers, 645 fathers	NA	5p15.1	NR	rs2560850-?		8E-6		1.86	[NR]	Illumina [NR] (imputed)	N
714	chr5	16913854	16913855	rs17614462	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	5p15.1	MYO10	rs17614462-A	0.045	2E-6	(IGFBP-1 )	0.03	[NR] ng/mL increase	Illumina [899892]	N
714	chr5	16916590	16916591	rs35151606	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	5p15.1		rs35151606-?	NR	8E-9				NR [~ 8900000] (imputed)	N
714	chr5	17003084	17003085	rs6870564	23400010	Del-Aguila JL	2013-02-12	Pharmacogenomics J	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NA	5p15.1	MYO10	rs6870564-A	0.13	4E-6	(EA-glucose response)	3.84	[2.21-5.47] mg/dL increase	Affymetrix, Illumina [> 2000000] (imputed)	N
715	chr5	17148910	17148911	rs682748	19668339	Potkin SG	2009-08-07	PLoS One	Hippocampal atrophy as a quantitative trait in a genome-wide association study identifying novel susceptibility genes for Alzheimer's disease.	Hippocampal atrophy	162 European ancestry cases, 192 European ancestry controls, 7 African American cases, 14 African American controls, 1 Asian ancestry cases, 3 Asian ancestry controls, 2 cases	NA	5p15.1	NR	rs682748-?	NR	8E-6				Illumina [516645]	N
715	chr5	17162703	17162704	rs12657901	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric bone mineral content (spine)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	5p15.1	NR	rs12657901-G	0.491	3E-6	(Males)	0.199963	[0.12-0.28] unit increase	Illumina [~ 6600000] (imputed)	N
716	chr5	17215443	17215444	rs2962370	23092984	Goes FS	2012-10-23	Transl Psychiatry	Genome-wide association of mood-incongruent psychotic bipolar disorder.	Bipolar disorder with mood-incongruent psychosis	2,196 European and other ancestry cases, 8,148 European and other ancestry controls	NA	5p15.1	BASP1	rs2962370-G	NR	5E-6		1.19	[NR]	Affymetrix, Illumina [~ 2500000] (imputed)	N
716	chr5	17237626	17237627	rs17652669	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5p15.1	MYO10	rs17652669-?	NR	2E-6	(SM 22:0)	0.77024955	[0.45-1.09] unit decrease	Affymetrix [at least 2500000] (imputed)	N
716	chr5	17256047	17256048	rs6889004	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	5p15.1	NR	rs6889004-?	NR	3E-6				Affymetrix [NR]	N
717	chr5	17314071	17314072	rs298522	29678681	Matana A	2018-04-18	Genomics	Genome-wide meta-analysis identifies novel gender specific loci associated with thyroid antibodies level in Croatians.	Plasma anti-thyroglobulin and anti-thyroid peroxidase levels (bivariate analysis)	up to 1,596 Croatian ancestry women, up to 1,033 Croatian ancestry men	NA	5p15.1	BASP1	rs298522-?	NR	2E-6	(women)	0.018	NR unit increase	Illumina [5527232] (imputed)	N
717	chr5	17317811	17317812	rs72738689	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	5p15.1		rs72738689-?	NR	3E-8				NR [~ 8900000] (imputed)	N
717	chr5	17330407	17330408	rs298555	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Subjective well-being	298,420 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	5p15.1	NR	rs298555-A	0.6948	3E-7		0.016343122	[0.01-0.023] unit increase	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
717	chr5	17375122	17375123	rs2859621	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	5p15.1	CTD-2139B15.5	rs2859621-G	0.655096	6E-9		0.013569563	[0.009-0.0181] unit decrease	Affymetrix [93095623] (imputed)	N
717	chr5	17399881	17399882	rs964751	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	5p15.1	RP11-321E2.3	rs964751-C	0.468999	3E-11		0.014904104	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
717	chr5	17399898	17399899	rs964752	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	5p15.1	NR	rs964752-G	0.539949	1E-10		0.012387	[0.0086-0.0161] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
718	chr5	17443653	17443654	rs7706512	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Degraded stimulus continuous performance test score	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	5p15.1	intergenic	rs7706512-A	NR	3E-8		0.21140607	[0.14-0.28] unit increase	Illumina [> 6200000] (imputed)	N
718	chr5	17454082	17454083	rs187843643	28212542	Ransohoff KJ	2017-02-09	Oncotarget	Two-stage genome-wide association study identifies a novel susceptibility locus associated with melanoma.	Melanoma	4,842 European ancestry cases, 286,565 European ancestry controls	1,804 European ancestry cases, 1,026 European ancestry controls	5p15.1	BASP1	rs187843643-T	0.01	4E-8		1.96	[1.54-2.48]	Illumina [at least 560000] (imputed)	N
718	chr5	17484168	17484169	rs142397827	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-7 levels	3,409 Finnish ancestry individuals	NA	5p15.1	NR	rs142397827-C		4E-6		0.4555	[0.26-0.65] SD units decrease	NR [10700000] (imputed)	N
719	chr5	17679164	17679165	rs141425475	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-7 levels	3,409 Finnish ancestry individuals	NA	5p15.1	NR	rs141425475-C		3E-6		0.4781	[0.28-0.68] SD units increase	NR [10700000] (imputed)	N
720	chr5	17706350	17706351	rs11956350	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (negative Marder score)	1,390 European ancestry cases	NA	5p15.1		rs11956350-A	NR	6E-6	(GLM)	4.9287	[NR] unit increase	Illumina [~ 9000000] (imputed)	N
720	chr5	17784778	17784779	rs7708009	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Posterior-cingulate cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	5p15.1	NR	rs7708009-?		3E-6				Illumina [4322238] (imputed)	N
720	chr5	17791090	17791091	rs12514883	25628645	Tong Y	2015-01-13	Front Genet	Identification of genetic variants or genes that are associated with Homoharringtonine (HHT) response through a genome-wide association study in human lymphoblastoid cell lines (LCLs).	Response to Homoharringtonine (cytotoxicity)	93 African American ancestry lymphoblastoid cell lines, 91 European ancestry lymphoblastoid cell lines, 94 Han Chinese ancestry lymphoblastoid cell lines	NA	5p15.1	intergenic	rs12514883-?		7E-6				Affymetrix, Illumina [6750581] (imputed)	N
721	chr5	17876400	17876401	rs76280858	25987507	Minica CC	2015-05-19	Behav Genet	Heritability, SNP- and Gene-Based Analyses of Cannabis Use Initiation and Age at Onset.	Cannabis use (age at onset)	5,148 European ancestry users	NA	5p15.1	NR	rs76280858-T		2E-6		0.21	[0.13-0.29] unit increase	NR [5896100] (imputed)	N
723	chr5	18157576	18157577	rs7713131	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	5p15.1	NR	rs7713131-?	NR	2E-6		0.221967	[0.13-0.31] unit increase	NR [13958389] (imputed)	N
723	chr5	18186426	18186426	rs140236920	25963547	Wilson CL	2015-05-11	Cancer	Genetic and clinical factors associated with obesity among adult survivors of childhood cancer: A report from the St. Jude Lifetime Cohort.	Obesity in adult survivors of childhood cancer exposed to cranial radiation	365 obese individuals, 411 non-obese individuals	NA	5p15.1	CDH18, BASP1	rs140236920-?	0.46	1E-7		1.77	(1.43-2.20)	Affymetrix [NR] (imputed)	N
724	chr5	18238433	18238434	rs6863176	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Time-dependent creatinine clearance change response to tenofovir treatment in HIV infection (time and treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	5p15.1	NR	rs6863176-?		4E-6	(African)			Illumina [~ 5140000] (imputed)	N
724	chr5	18238433	18238434	rs6863176	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Time-dependent creatinine clearance change response to tenofovir treatment in HIV infection (time and treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	5p15.1	NR	rs6863176-?		3E-6	(African)			Illumina [~ 5140000] (imputed)	N
725	chr5	18408907	18408908	rs72733993	26265699	Karol SE	2015-08-11	Blood	Genetics of glucocorticoid-associated osteonecrosis in children with acute lymphoblastic leukemia.	Glucocorticoid-induced osteonecrosis	274 European ancestry osteonecrosis cases, 25 Black osteonecrosis cases, 68 Hispanic osteonecrosis cases, 6 Asian ancestry osteonecrosis cases, 27 other ancestry osteonecrosis cases,  1,477 European ancestry treated controls, 223 Black treated controls, 572 Hispanic treated controls, 48 Asian ancestry treated controls, 235 other ancestry treated controls	NA	5p14.3	intergenic	rs72733993-A	0.156	3E-6				Affymetrix, Illumina [NR] (imputed)	N
725	chr5	18421509	18421510	rs1918340	33109212	Chang H	2020-10-28	BMC Med	Genetic architecture of cardiometabolic risks in people living with HIV.	HDL cholesterol levels in HIV infection	3,095 European ancestry individuals, 3,189 African American individuals	NA	5p14.3	LINC01689, LINC01684	rs1918340-?		1E-6	(African American)	0.60006607	[0.36-0.84] unit decrease	Illumina [13620258] (imputed)	N
725	chr5	18450613	18450614	rs13175566	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	5p14.3	NR	rs13175566-?	NR	1E-9				Affymetrix [NR]	N
726	chr5	18483650	18483651	rs4866334	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	5p14.3	NR	rs4866334-C	0.0883955067200712	4E-6	(IGP17)	0.2533	[0.15-0.36] unit decrease	Illumina [~ 2500000] (imputed)	N
726	chr5	18583285	18583286	rs12652689	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin I concentration	12,730 European ancestry individuals	NA	5p14.3		rs12652689-?	NR	3E-6		0.07	[0.041-0.099] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
727	chr5	18718995	18718996	rs10472156	33539531	Casares-Marfil D	2021-02-04	Clin Infect Dis	A genome-wide association study identifies novel susceptibility loci in chronic Chagas cardiomyopathy.	Chagas cardiomyopathy in Tripanosoma cruzi seropositivity	981 Latin American cases, 1,328 Latin American controls	NA	5p14.3		rs10472156-A	0.73	9E-7		1.1	[1.06-1.14]	Illumina [8218190] (imputed)	N
729	chr5	18909674	18909675	rs11958034	25240745	Lopez S	2014-09-18	Mitochondrion	A genome-wide association study in the genetic analysis of idiopathic thrombophilia project suggests sex-specific regulation of mitochondrial DNA levels.	Mitochondrial DNA levels	173 European ancestry males and 213 European ancestry females from 21 families	NA	5p14.3	CDH18	rs11958034-?	NR	5E-6	(Females)		[NR]	Illumina [283437]	N
730	chr5	19054177	19054178	rs80240198	31049640	Chen J	2019-05-02	Diabetologia	Genome-wide association study of type 2 diabetes in Africa.	Type 2 diabetes	2,633 African ancestry cases, 1,714 African ancestry controls	NA	5p14.3	LOC401177, CDH18	rs80240198-T	0.958	4E-6		1.54	[1.28-1.86]	Affymetrix, Illumina [12148595] (imputed)	N
730	chr5	19108689	19108690	rs79767424	27749845	Lesseur C	2016-10-17	Nat Genet	Genome-wide association analyses identify new susceptibility loci for oral cavity and pharyngeal cancer.	Oral cavity and pharyngeal cancer	2,717 European ancestry oral cavity cancer cases, 273 oral cavity cancer cases, 2,506 European ancestry oropharynx cancer cases, 135 oropharynx cancer cases, 305 European and unknown ancestry hypopharynx cancer cases, 73 European and unknown ancestry overlapping cases, 25 European and unknown ancestry cases, 5,984 European ancestry controls, 601 controls	NA	5p14.3	intergenic	rs79767424-C	0.97	4E-10		1.812908		Illumina [7574753] (imputed)	N
731	chr5	19168937	19168938	rs149021889	31996736	Elsheikh SSM	2020-01-29	Sci Rep	Genome-Wide Association Study of Brain Connectivity Changes for Alzheimer's Disease.	Longitudinal brain connectivity change (Louvain modularity)	57 European ancestry individuals	NA	5p14.3	NR	rs149021889-T	NR	1E-6		4.82	z score increase	NR [9015039] (imputed)	N
731	chr5	19181659	19181660	rs56010419	30583798	Bovijn J	2018-12-21	Am J Hum Genet	GWAS Identifies Risk Locus for Erectile Dysfunction and Implicates Hypothalamic Neurobiology and Diabetes in Etiology.	Erectile dysfunction	6,175 European ancestry male cases, 217,630 European ancestry male controls	NA	5p14.3	CDH18	rs56010419-?	NR	9E-6				Affymetrix, Illumina [at least 807411] (imputed)	N
731	chr5	19191676	19191677	rs80332495	33045005	Vogelezang S	2020-10-12	PLoS Genet	Novel loci for childhood body mass index and shared heritability with adult cardiometabolic traits.	Childhood body mass index	39,620 European ancestry individuals	NA	5p14.3	CDH18	rs80332495-A	0.94	4E-7		0.112	[0.069-0.155] unit increase	Affymetrix, Illumina [8227808] (imputed)	N
731	chr5	19210891	19210892	rs6451042	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (90 or 130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	5p14.3	intergenic	rs6451042-?	NR	9E-6		0.154	[0.068-0.24] unit decrease	Illumina [at least 13000000] (imputed)	N
732	chr5	19280884	19280885	rs4535457	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	5p14.3	NR	rs4535457-?	NR	1E-9				Affymetrix [NR]	N
733	chr5	19440167	19440168	rs349475	20800221	Terracciano A	2010-08-25	Biol Psychiatry	Genome-wide association scan of trait depression.	Depression (quantitative trait)	3,972 Sardinian individuals, 839 European ancestry individuals	NA	5p14.3	CDH18	rs349475-T	0.29	2E-6		0.18	[NR] unit increase	Affymetrix, Illumina [up to 2500000] (imputed)	N
733	chr5	19460856	19460856	rs76161559	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Reading ability (multivariate)	up to 3,468 European ancestry individuals	NA	5p14.3	NR	rs76161559-?		2E-6				Illumina [up to 6969139] (imputed)	N
733	chr5	19460856	19460856	rs76161559	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Rapid automised naming of digits	2,563 European ancestry individuals	NA	5p14.3	Intergenic	rs76161559-A	0.938163833	3E-7		0.423784	[0.26-0.59] unit decrease	Illumina [6952813] (imputed)	N
733	chr5	19466319	19466320	rs425903	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	5p14.3	NR	rs425903-?	NR	3E-8				Illumina [7760689] (imputed)	N
733	chr5	19473851	19473852	rs144596626	31996736	Elsheikh SSM	2020-01-29	Sci Rep	Genome-Wide Association Study of Brain Connectivity Changes for Alzheimer's Disease.	Longitudinal brain connectivity change (Louvain modularity)	57 European ancestry individuals	NA	5p14.3	NR	rs144596626-G	NR	3E-10		6.32	z score increase	NR [9015039] (imputed)	N
735	chr5	19745714	19745715	rs115236533	28498854	Liang J	2017-05-12	PLoS Genet	Single-trait and multi-trait genome-wide association analyses identify novel loci for blood pressure in African-ancestry populations.	Blood pressure traits (multi-trait analysis)	Up to 31,155 African individuals	Up to 4,187 African individuals, up to 14,016 Korean ancestry individuals, up to 23,914 European ancestry individuals, up to 12,278 Hispanic individuals	5p14.3	NR	rs115236533-?	NR	9E-7	(Het)			Affymetrix, Illumina [at least 30072738] (imputed)	N
736	chr5	19839502	19839503	rs1498103	26776603	Honne K	2016-01-18	Arthritis Res Ther	A longitudinal genome-wide association study of anti-tumor necrosis factor response among Japanese patients with rheumatoid arthritis.	Response to anti-TNF therapy in rheumatoid arthritis	31 Japanese ancestry mild cases, 282 Japanese ancestry moderate cases, 131 Japanese ancestry severe cases	NA	5p14.3	CDH18	rs1498103-A	0.46	6E-6	(moderate and severe, GEE model, both 3 and 6 months)	0.26	[0.15, 0.38] unit increase	Illumina [4253138] (imputed)	N
736	chr5	19850048	19850049	rs143675498	34404834	Sin S	2021-08-17	Sci Rep	A genome-wide association study of quantitative computed tomographic emphysema in Korean populations.	Emphysema	514 Korean ancestry COPD individuals, 34 Korean ancestry non COPD individuals	NA	5p14.3		rs143675498-?	NR	1E-6		1.42	[0.85-1.99] unit decrease	NR [599248] (imputed)	N
737	chr5	19959056	19959057	rs6451575	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	5p14.3	NR	rs6451575-T	0.573	2E-9		0.00799836	[0.0054-0.0106] unit decrease	NR [~ 9732723] (imputed)	N
738	chr5	20109560	20109561	rs11744487	30852652	Schlicht K	2019-03-09	Hum Genet	The metabolic network coherence of human transcriptomes is associated with genetic variation at the cadherin 18 locus.	Metabolic coherence (transcriptomic)	369 European ancestry individuals	3,783 European ancestry individuals	5p14.3	CDH18	rs11744487-?	NR	2E-7				Illumina [1067702]	N
739	chr5	20300831	20300832	rs12153263	28424481	Sugiura-Ogasawara M	2017-04-20	J Hum Genet	The first genome-wide association study identifying new susceptibility loci for obstetric antiphospholipid syndrome.	Obstetric antiphospholipid syndrome	115 Japanese ancestry female cases, 419 Japanese ancestry male and female controls	NA	5p14.3	CDH18	rs12153263-T	0.6	6E-6		2.631579	[1.69-4]	Affymetrix [426344]	N
739	chr5	20304423	20304424	rs111913224	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5p14.3	NR	rs111913224-G	0.0122	4E-11	(BPNT1)	0.04686	NR unit increase	Illumina [1671387] (imputed)	N
740	chr5	20367603	20367604	rs78624483	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5p14.3	NR	rs78624483-C	0.01045	2E-10	(BPNT1)	0.04802	NR unit increase	Illumina [1671387] (imputed)	N
740	chr5	20374212	20374213	rs73058713	25642632	Liu H	2015-02-02	Nat Genet	Discovery of six new susceptibility loci and analysis of pleiotropic effects in leprosy.	Leprosy	1,548 Chinese ancestry cases, 2,150 Chinese ancestry controls, 4,362 Chinese ancestry controls with immune-related diseases	6,765 Chinese ancestry cases, 9,505 Chinese ancestry controls	5p14.3	intergenic	rs73058713-A	0.146	1E-8		1.19	[NR]	Illumina [4577171] (imputed)	N
740	chr5	20375092	20375093	rs146832026	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Lung cancer	2,485 European ancestry cases, 410,350 European ancestry controls	NA	5p14.3		rs146832026-T	0.013938	6E-7		1.6792612	NR	Affymetrix [7846216] (imputed)	N
740	chr5	20412186	20412187	rs146778855	34380431	Tsai CK	2021-08-11	J Headache Pain	Identifying genetic variants for age of migraine onset in a Han Chinese population in Taiwan.	Migraine with aura (age at onset)	167 Han Chinese ancestry individuals	NA	5p14.3		rs146778855-?	NR	1E-8		20.63	unit increase	Affymetrix [NR]	N
741	chr5	20542545	20542546	rs146793722	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	7,894 Sub-Saharan African ancestry individuals	NA	5p14.3		rs146793722-C	0.982955	1E-6		0.0362683	[0.022-0.051] unit decrease	Illumina [13900000] (imputed)	N
741	chr5	20552941	20552942	rs190082809	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,963 Sub-Saharan African ancestry females	NA	5p14.3		rs190082809-G	0.982986	3E-7		0.0528927	[0.033-0.073] unit decrease	Illumina [13900000] (imputed)	N
742	chr5	20684460	20684461	rs7447257	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	5p14.3	Intergenic	rs7447257-T	0.5151	1E-11	(MTAG)	0.0121	[0.0086-0.0156] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
742	chr5	20684460	20684461	rs7447257	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	5p14.3	Intergenic	rs7447257-C	0.4849	2E-10		0.0125	[0.0086-0.0164] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
743	chr5	20719526	20719527	rs10941851	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	5p14.3	Intergenic	rs10941851-T	0.4993	1E-10	(MTAG)	0.0106	[0.0073-0.0139] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
743	chr5	20746007	20746008	rs181826881	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Rheumatic fever	1,115 European ancestry cases, 88,076 European ancestry controls	NA	5p14.3	NR	rs181826881-?	NR	7E-6		1.4744	[0.7-2.25] unit increase	Illumina [at least 560000] (imputed)	N
743	chr5	20749071	20749072	rs185169399	31545351	Irvin MR	2019-09-23	Am J Hypertens	Genome wide association study of apparent treatment resistant hypertension in the CHARGE consortium: The CHARGE Pharmacogenetics Working Group.	Resistant hypertension	228 African American ancestry cases, 2,480 African American ancestry controls	NA	5p14.3	CDH18	rs185169399-A	0.94	5E-7		11.96	[4.53-31.55]	Affymetrix, Illumina [NR] (imputed)	N
744	chr5	20865979	20865980	rs13361548	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	5p14.3	Intergenic	rs13361548-A	0.3866	2E-8	(MTAG)	0.0104	[0.0069-0.0139] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
744	chr5	20887722	20887723	rs114346462	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5p14.3	NR	rs114346462-G	0.01394	3E-14	(IGHM)	0.3072	NR unit increase	Illumina [1671387] (imputed)	N
744	chr5	20968496	20968497	rs17317275	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-9 levels	3,634 Finnish ancestry individuals	NA	5p14.3	NR	rs17317275-G		8E-6		0.4062	[0.23-0.58] SD units increase	NR [10700000] (imputed)	N
745	chr5	20974770	20974771	rs74703333	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Scarlet fever	6,812 European ancestry cases, 113,837 European ancestry controls	NA	5p14.3	NR	rs74703333-?	NR	3E-6		1.939	[1.25-2.63] unit decrease	Illumina [at least 560000] (imputed)	N
745	chr5	20997644	20997645	rs78053703	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (severe respiratory symptoms vs population)	1,128 European ancestry cases, 679,531 European ancestry controls, 245 Hispanic or Latin American cases, 94,237 Hispanic or Latin American controls, 74 Black or African American cases, 22,383 Black or African American controls	NA	5p14.3		rs78053703-?	NR	9E-6		0.9061561	[0.51-1.3] unit increase	Illumina [9906551] (imputed)	N
745	chr5	21007889	21007890	rs10447131	33393726	Ortiz Fernandez L	2021-01-04	Arthritis Rheumatol	Genetic association of a gain of function interferon gamma receptor 1 (IFNGR1) polymorphism and the intergenic region LNCAROD/DKK1 with Behcet's disease.	Behcet's disease	2,344 Turkish ancestry cases, 1,920 Turkish ancestry controls, 437 European ancestry cases, 3,325 European ancestry controls, 312 East Asian ancestry cases, 398 East Asian ancestry controls, 104 Tunisian ancestry cases, 142 Tunisian ancestry controls	NA	5p14.3	GUSBP1	rs10447131-T	NR	5E-6		0.7274	NR	Illumina [up to 1244428] (imputed)	N
746	chr5	21120076	21120077	rs76340169	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	5p14.3	NR	rs76340169-?	NR	9E-6		4.6697	[0.019-9.32] unit decrease	Illumina [at least 560000] (imputed)	N
746	chr5	21172292	21172293	rs17253658	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite concentrations in chronic kidney disease	1,143 European ancestry cases	NA	5p14.3	CDH18, GUSBP1	rs17253658-T	NR	1E-8	(Serine)	0.475572	[0.31-0.64] unit increase	Illumina [up to 9281895] (imputed)	N
746	chr5	21194892	21194892	rs77795744	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (severe respiratory symptoms vs population)	1,128 European ancestry cases, 679,531 European ancestry controls, 245 Hispanic or Latin American cases, 94,237 Hispanic or Latin American controls, 74 Black or African American cases, 22,383 Black or African American controls	NA	5p14.3		rs77795744-?	NR	3E-6		0.9694775	[0.56-1.38] unit increase	Illumina [9906551] (imputed)	N
747	chr5	21259137	21259138	rs1491921	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	5p14.3	NUP50P3, LOC728411	rs1491921-C	0.013	7E-7		5.69	[2.63-12.33]	Illumina [1556551]	N
747	chr5	21283106	21283107	rs10079927	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (90 or 130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	5p14.3	intergenic	rs10079927-?	NR	4E-6		0.204	[0.086-0.322] unit increase	Illumina [at least 13000000] (imputed)	N
748	chr5	21416634	21416634	rs1448208765	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5p14.3	NR	rs1448208765-G	0.0122	2E-8	(CNN2)	0.01775	NR unit increase	Illumina [1671387] (imputed)	N
749	chr5	21540807	21540808	rs1496462	32141793	Garman L	2020-03-06	Ocul Immunol Inflamm	Genome-Wide Association Study of Ocular Sarcoidosis Confirms HLA Associations and Implicates Barrier Function and Autoimmunity in African Americans.	Ocular sarcoidosis	260 African American cases, 1,551 African American controls	NA	5p14.3	NR	rs1496462-?	NR	8E-6		1.5941335	[1.3-1.96]	Illumina [13976150] (imputed)	N
749	chr5	21614071	21614072	rs76010099	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	5p14.3	intergenic	rs76010099-A	NR	3E-7	(AA)			Illumina [up to 11995908] (imputed)	N
749	chr5	21614071	21614072	rs76010099	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	5p14.3	intergenic	rs76010099-A	NR	3E-7				Illumina [up to 11995908] (imputed)	N
750	chr5	21665640	21665641	rs663970	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	5p14.3	BC038535	rs663970-?	NR	9E-6		0.163	[0.09-0.236] unit decrease	Illumina [at least 13000000] (imputed)	N
750	chr5	21749347	21749348	rs12109285	22491018	Wang J	2012-04-10	Pharmacogenomics J	Genome-wide association analysis implicates the involvement of eight loci with response to tocilizumab for the treatment of rheumatoid arthritis.	Response to tocilizumab in rheumatoid arthritis	1,157 European and other ancestry rheumatoid arthritis cases	526 European and other ancestry rheumatoid arthritis cases	5p14.3	intergenic	rs12109285-?	0.011	1E-7	(CSJC , EA, RF+)	130.2	[NR] unit decrease	Illumina [534053]	N
751	chr5	21779153	21779154	rs4701252	19557197	Heard-Costa NL	2009-06-26	PLoS Genet	NRXN3 is a novel locus for waist circumference: a genome-wide association study from the CHARGE Consortium.	Waist circumference	31,373 European ancestry individuals	38,641 individuals	5p14.3	CDH12	rs4701252-?	NR	2E-6				Affymetrix, Illumina [up to 512349]	N
751	chr5	21881513	21881514	rs6874819	34337522	van der Zanden LFM	2021-04-24	Eur Urol Open Sci	<i>CDH12</i> as a Candidate Gene for Kidney Injury in Posterior Urethral Valve Cases: A Genome-wide Association Study Among Patients with Obstructive Uropathies.	Kidney injury 5 years post-surgery in obstructive uropathies	141 European ancestry cases, 216 European ancestry controls	NA	5p14.3		rs6874819-G	NR	8E-7	(adjusted)	4.0		Illumina [622697] (imputed)	N
752	chr5	21889432	21889433	rs11749350	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5p14.3	PRDM9	rs11749350-?	NR	9E-6	(phosphoenolpyruvic acid)	0.2053707	[0.11-0.3] unit decrease	Affymetrix [at least 2500000] (imputed)	N
752	chr5	21918276	21918277	rs986732	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	5p14.3	PMCHL1, CDH12	rs986732-?		3E-7				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
752	chr5	21918276	21918277	rs986732	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	5p14.3	CDH12, PMCHL1	rs986732-?	NR	3E-8	(EA)	0.076	unit decrease	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
752	chr5	21918276	21918277	rs986732	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	5p14.3	PMCHL1, CDH12	rs986732-?	NR	7E-7	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
752	chr5	21968086	21968087	rs182677095	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Poseidoniaceae abundance in stool	5,959 Finnish ancestry individuals	NA	5p14.3		rs182677095-T	0.0606902	1E-8		0.0411386	[0.027-0.055] unit decrease	Illumina [7980478] (imputed)	N
753	chr5	22036907	22036908	rs75455045	32141793	Garman L	2020-03-06	Ocul Immunol Inflamm	Genome-Wide Association Study of Ocular Sarcoidosis Confirms HLA Associations and Implicates Barrier Function and Autoimmunity in African Americans.	Ocular sarcoidosis	260 African American cases, 1,551 African American controls	NA	5p14.3	NR	rs75455045-A	NR	6E-6		2.903	[1.83-4.61]	Illumina [13976150] (imputed)	N
753	chr5	22060952	22060953	rs73068906	29596498	Charles BA	2018-03-29	PLoS One	Analyses of genome wide association data, cytokines, and gene expression in African-Americans with benign ethnic neutropenia.	Low white blood cell count (conditioned on rs2814778)	592 African American individuals with low white blood cell count, 586 African American individuals with high white blood cell count	NA	5p14.3	CDH12, CDHB	rs73068906-C	0.9375	2E-7		3.3183	[2.86-3.77]	Illumina [at least 656747] (imputed)	N
753	chr5	22076488	22076489	rs77696237	29596498	Charles BA	2018-03-29	PLoS One	Analyses of genome wide association data, cytokines, and gene expression in African-Americans with benign ethnic neutropenia.	Low white blood cell count (conditioned on rs2814778)	592 African American individuals with low white blood cell count, 586 African American individuals with high white blood cell count	NA	5p14.3	CDH12	rs77696237-A	0.9372	4E-7		3.2145	[2.76-3.66]	Illumina [at least 656747] (imputed)	N
754	chr5	22193966	22193967	rs6883351	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	5p14.3	NR	rs6883351-T	0.491	2E-9		0.00648284	[0.0044-0.0086] unit increase	NR [9732723] (imputed)	N
754	chr5	22193966	22193967	rs6883351	30617275	Erzurumluoglu AM	2019-01-07	Mol Psychiatry	Meta-analysis of up to 622,409 individuals identifies 40 novel smoking behaviour associated genetic loci.	Smoking initiation	324,851 European ancestry individuals, 21,962 South Asian ancestry individuals	up to 275,596 European ancestry individuals	5p14.3	CDH12	rs6883351-T	0.34	5E-8		0.0129	[0.007-0.0188] unit increase (replication)	Affymetrix, Illumina [up to 1207583] (imputed)	N
754	chr5	22219502	22219503	rs4518351	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking initiation (ever regular vs never regular)	up to 433,216 European ancestry individuals	NA	5p14.3	CDH12	rs4518351-G	0.444	1E-8		0.0131	[0.0086-0.0176] unit increase	Illumina [~ 250000] (imputed)	N
754	chr5	22223530	22223531	rs73062553	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5p14.3	NR	rs73062553-T	0.01045	2E-8	(ACLY)	0.3542	NR unit increase	Illumina [1671387] (imputed)	N
755	chr5	22336166	22336167	rs2197341	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	5p14.3	CDH12	rs2197341-T	NR	9E-6		0.0245603	[0.014-0.035] unit increase	Illumina [13520550] (imputed)	N
757	chr5	22567255	22567256	rs431616	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris heterochromicity	329 South Asian ancestry individuals		5p14.3	NR	rs431616-A	0.207	9E-6		0.466	[0.26-0.67] unit increase	Illumina [640625] (imputed)	N
757	chr5	22642533	22642534	rs66783663	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	5p14.3	NR	rs66783663-T	0.1419	5E-6	(EA)	0.0408	[0.023-0.058] unit decrease	Illumina [~ 11800000] (imputed)	N
757	chr5	22664794	22664795	rs1545967	30886212	Eszlari N	2019-03-18	Transl Psychiatry	Genome-wide association analysis reveals KCTD12 and miR-383-binding genes in the background of rumination.	Brooding (response to stress)	1,758 European ancestry individuals	NA	5p14.3	CDH12	rs1545967-A	NR	5E-7		0.1028	unit increase	Illumina [3474641] (imputed)	N
758	chr5	22764610	22764611	rs72748738	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5p14.3	NR	rs72748738-A	0.01045	2E-8	(CTSB)	0.6079	NR unit increase	Illumina [1671387] (imputed)	N
758	chr5	22764610	22764611	rs72748738	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5p14.3	NR	rs72748738-A	0.01045	2E-10	(ARSA)	0.007828	NR unit increase	Illumina [1671387] (imputed)	N
759	chr5	22812263	22812264	rs780179	23502783	Weinhold N	2013-03-17	Nat Genet	The CCND1 c.870G>A polymorphism is a risk factor for t(11;14)(q13;q32) multiple myeloma.	Multiple myeloma (IgH translocation)	up to 1,660 European ancestry cases, 7,306 European ancestry controls		5p14.3	NR	rs780179-G	0.48	9E-7	(t11;14 vs non t11;14)	1.59	[1.32-1.92]	Illumina [414804] (imputed)	N
759	chr5	22817193	22817194	rs17293739	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5p14.3	PRDM9	rs17293739-?	NR	8E-7	(hippuric acid)	0.31977347	[0.19-0.45] unit increase	Affymetrix [at least 2500000] (imputed)	N
759	chr5	22937178	22937180	rs757708187	33602968	Skuladottir AT	2021-02-18	Sci Rep	A meta-analysis uncovers the first sequence variant conferring risk of Bell's palsy.	Bell's palsy	4,714 European ancestry cases, 1,011,520 European ancestry controls	NA	5p14.3	intergenic	rs757708187-C	0.168	2E-6		1.17058	NR	Affymetrix, Illumina [30341632] (imputed)	N
760	chr5	23007864	23007864	rs150816383	33602968	Skuladottir AT	2021-02-18	Sci Rep	A meta-analysis uncovers the first sequence variant conferring risk of Bell's palsy.	Bell's palsy	4,714 European ancestry cases, 1,011,520 European ancestry controls	NA	5p14.3	intergenic	rs150816383-?	0.1464	4E-7		1.17645	NR	Affymetrix, Illumina [30341632] (imputed)	N
760	chr5	23014063	23014064	rs73741873	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		AC010445.1	rs73741873-?	NR	4E-9	(female)	1.77717	[NR] unit increase	Affymetrix [NR] (imputed)	N
761	chr5	23195393	23195394	rs310892	30498476	Liu H	2018-11-15	Front Endocrinol (Lausanne)	Heritability and Genome-Wide Association Study of Plasma Cholesterol in Chinese Adult Twins.	Total cholesterol levels	139 Chinese ancestry dizygotic twin pairs	NA	5p14.3	LOC105374687	rs310892-?	NR	8E-6				Illumina [7405822] (imputed)	N
762	chr5	23217566	23217567	rs10473629	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	5p14.3	Intergenic	rs10473629-A	0.5209	4E-10	(MTAG)	0.0112	[0.0077-0.0147] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
762	chr5	23217566	23217567	rs10473629	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	5p14.3	Intergenic	rs10473629-G	0.4791	4E-11		0.0129	[0.009-0.0168] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
762	chr5	23223852	23223853	rs10076419	28203683	Heit JA	2017-02-16	Thromb Haemost	Identification of unique venous thromboembolism-susceptibility variants in African-Americans.	Venous thromboembolism adjusted for sickle cell variant rs77121243-T	393 African American cases, 4,941 African American controls.	NR	5p14.3	LOC100420804	rs10076419-?	0.84	8E-6		1.7636685		Affymetrix, Illumina [14074516] (imputed)	N
762	chr5	23244024	23244025	rs17376026	22566634	Benjamin DJ	2012-05-07	Proc Natl Acad Sci U S A	The genetic architecture of economic and political preferences.	Economic and political preferences (immigration/crime)	9,617 European ancestry individuals	NA	5p14.3	intergenic	rs17376026-T	NR	6E-6		0.121	[0.068-0.174] unit decrease	Illumina [628922]	N
762	chr5	23301907	23301908	rs12517041	25972035	Vinayagamoorthy N	2015-05-14	J Hum Genet	Association of common variants in the calcium-sensing receptor gene with serum calcium levels in East Asians.	Calcium levels	4,558 Korean ancestry individuals	4,093 Korean ancestry individuals	5p14.2	PRDM9	rs12517041-G	0.056	8E-7		0.00411	[0.0025-0.0057] unit increase	Affymetrix [1219546] (imputed)	N
763	chr5	23353254	23353255	rs116220136	28642124	Hensman Moss DJ	2017-06-20	Lancet Neurol	Identification of genetic variants associated with Huntington's disease progression: a genome-wide association study.	Huntington's disease progression	1,989 European and unknown ancestry mutation carriers	NA	5p14.2	Intergenic	rs116220136-?	NR	6E-6				Illumina [9650000] (imputed)	N
763	chr5	23365589	23365590	rs554302100	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	225,112 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	445,360 individuals	5p14.2	intergenic	rs554302100-C	0.0035	6E-11		3.7522	[2.63-4.88] mmHg increase	Affymetrix [NR] (imputed)	N
763	chr5	23370957	23370958	rs185862045	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	225,112 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	445,360 individuals	5p14.2	intergenic	rs185862045-A	0.0014	3E-39		17.2028	[14.63-19.77] mmHg increase	Affymetrix [NR] (imputed)	N
763	chr5	23371639	23371640	rs10050856	34356046	Oluwafemi OO	2021-07-01	Genes (Basel)	Genome-Wide Association Studies of Conotruncal Heart Defects with Normally Related Great Vessels in the United States.	Conotruncal heart defects with normally related great vessels (without 22q.11.2 deletion syndrome)	294 European ancestry cases, 2,976 European ancestry controls, 641 trios	NA	5p14.2		rs10050856-?	NR	9E-6				Illumina [3311160] (imputed)	N
764	chr5	23532642	23532643	rs6889665	21775986	Hinch AG	2011-07-20	Nature	The landscape of recombination in African Americans.	Recombination measurement	30,033 African American individuals	NA	5p14.2	PRDM9	rs6889665-?	0.71	2E-52	(Hotspot usage)			Affymetrix, Illumina [3058149] (imputed)	N
764	chr5	23532642	23532643	rs6889665	21775986	Hinch AG	2011-07-20	Nature	The landscape of recombination in African Americans.	Recombination measurement	30,033 African American individuals	NA	5p14.2	PRDM9	rs6889665-?	0.29	2E-246	(African-enrichment)			Affymetrix, Illumina [3058149] (imputed)	N
764	chr5	23542710	23542711	rs2914276	20981099	Kong A	2010-10-28	Nature	Fine-scale recombination rate differences between sexes, populations and individuals.	Recombination measurement (males)	4,389 European ancestry male individuals	NA	5p14.2	PRDM9	rs2914276-G	0.039	1E-50	(Fraction of recombinations in hotspots)			Illumina [497256] (imputed)	N
764	chr5	23542710	23542711	rs2914276	20981099	Kong A	2010-10-28	Nature	Fine-scale recombination rate differences between sexes, populations and individuals.	Recombination measurement (females)	6,041 European ancestry female individuals	NA	5p14.2	PRDM9	rs2914276-G	0.039	1E-100	(Fraction of recombinations in hotspots)			Illumina [497256] (imputed)	N
764	chr5	23566989	23566990	rs2914266	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	5p14.2	PRDM9	rs2914266-?		9E-6	(heterogeneous)	0.284	[0.16-0.41] unit decrease	Illumina [1492601] (imputed)	N
764	chr5	23566989	23566990	rs2914266	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	5p14.2	PRDM9	rs2914266-?		9E-6	(dominant)	0.279	[NR] unit decrease	Illumina [1492601] (imputed)	N
766	chr5	23728289	23728290	rs6876430	28322283	Chibnik LB	2017-03-21	Mol Psychiatry	Susceptibility to neurofibrillary tangles: role of the PTPRD locus and limited pleiotropy with other neuropathologies.	Dementia with Lewy bodies	195 European ancestry cases, 714 European ancestry controls	369 individuals	5p14.2		rs6876430-C	0.91	9E-6	(EA)			Affymetrix, Illumina [NR] (imputed)	N
766	chr5	23752022	23752023	rs143742864	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5p14.2	NR	rs143742864-G	0.0122	3E-8	(F2)	0.0334	NR unit increase	Illumina [1671387] (imputed)	N
766	chr5	23752022	23752023	rs143742864	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5p14.2	NR	rs143742864-G	0.0122	2E-9	(DPP7)	0.1626	NR unit increase	Illumina [1671387] (imputed)	N
767	chr5	23883383	23883384	rs68152875	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Experiencing mood swings	373,733 European ancestry individuals	NA	5p14.2	C5orf17	rs68152875-A	0.389932	9E-9		5.76	z score decrease	NR [10847151] (imputed)	N
768	chr5	24032377	24032378	rs55965054	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	5p14.2	NR	rs55965054-C	NR	3E-9		0.01391	[0.0093-0.0185] unit increase	Affymetrix [10847151] (imputed)	N
768	chr5	24032377	24032378	rs55965054	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling fed-up	374,971 European ancestry individuals	NA	5p14.2	NR	rs55965054-T	0.45301	1E-9		6.09	z score decrease	NR [10847151] (imputed)	N
768	chr5	24047839	24047840	rs1354167	27846281	Galesloot TE	2016-11-15	PLoS One	Meta-GWAS and Meta-Analysis of Exome Array Studies Do Not Reveal Genetic Determinants of Serum Hepcidin.	Hepcidin/ferritin ratio	1495 European ancestry individuals without iron deficiency or clinical inflammation, 324 European ancestry individuals, 1206 Val Borbera (founder/genetic isolated) individuals without iron deficiency or clinical inflammation, 274 Val Borbera (founder/genetic isolated) individuals, 2,695 European ancestry individuals without iron deficiency or clinical inflammation, 207 individuals	NA	5p14.2	CDH10	rs1354167-T	0.6692	6E-6		0.0898	[0.051-0.129] unit increase	Illumina [up to 38043574] (imputed)	N
768	chr5	24058514	24058515	rs73055009	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	6-month creatinine clearance change response to tenofovir treatment in HIV infection (treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	5p14.2	NR	rs73055009-?		1E-6	(Hispanic)			Illumina [~ 5140000] (imputed)	N
768	chr5	24059850	24059851	rs10054178	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	6-month creatinine clearance change response to tenofovir treatment in HIV infection (treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	5p14.2	NR	rs10054178-?		1E-6	(Hispanic)			Illumina [~ 5140000] (imputed)	N
768	chr5	24060598	24060599	rs113051092	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	6-month creatinine clearance change response to tenofovir treatment in HIV infection (treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	5p14.2	NR	rs113051092-?		1E-6	(Hispanic)			Illumina [~ 5140000] (imputed)	N
768	chr5	24062562	24062563	rs73055087	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	6-month creatinine clearance change response to tenofovir treatment in HIV infection (treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	5p14.2	NR	rs73055087-?		1E-6	(Hispanic)			Illumina [~ 5140000] (imputed)	N
768	chr5	24063395	24063396	rs79056512	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	6-month creatinine clearance change response to tenofovir treatment in HIV infection (treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	5p14.2	NR	rs79056512-?		1E-6	(Hispanic)			Illumina [~ 5140000] (imputed)	N
768	chr5	24064935	24064936	rs10041590	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	6-month creatinine clearance change response to tenofovir treatment in HIV infection (treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	5p14.2	NR	rs10041590-?		1E-6	(Hispanic)			Illumina [~ 5140000] (imputed)	N
768	chr5	24069792	24069793	rs10056373	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	6-month creatinine clearance change response to tenofovir treatment in HIV infection (treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	5p14.2	NR	rs10056373-?		1E-6	(Hispanic)			Illumina [~ 5140000] (imputed)	N
768	chr5	24072616	24072617	rs16893073	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	6-month creatinine clearance change response to tenofovir treatment in HIV infection (treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	5p14.2	NR	rs16893073-?		1E-6	(Hispanic)			Illumina [~ 5140000] (imputed)	N
769	chr5	24156931	24156932	rs6862766	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling fed-up	374,971 European ancestry individuals	NA	5p14.2	C5orf17	rs6862766-T	0.446479	8E-10		6.15	z score decrease	NR [10847151] (imputed)	N
769	chr5	24162940	24162941	rs11742741	25201988	Rietveld CA	2014-09-08	Proc Natl Acad Sci U S A	Common genetic variants associated with cognitive performance identified using the proxy-phenotype method.	Educational attainment	106,736 European ancestry individuals	NA	5p14.2	intergenic	rs11742741-A	0.515	3E-7		0.022	[NR] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
769	chr5	24239997	24239998	rs62347916	31518406	Abdellaoui A	2019-09-13	Hum Mol Genet	Phenome-wide investigation of health outcomes associated with genetic predisposition to loneliness.	Loneliness	511,280 European ancestry individuals	NA	5p14.2	intergenic	rs62347916-?	NR	3E-8		0.02	[0.014-0.026] unit increase	Affymetrix, Illumina [up to 14113458] (imputed)	N
770	chr5	24355554	24355555	rs972303	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex interaction	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	5p14.2	CDH10	rs972303-T	0.75	4E-6				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
770	chr5	24355554	24355555	rs972303	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	5p14.2	CDH10	rs972303-T	0.75	2E-6	(men)	0.032	units increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
771	chr5	24459842	24459843	rs374098	29532581	Hallfors J	2018-03-13	Addict Biol	Genome-wide association study in Finnish twins highlights the connection between nicotine addiction and neurotrophin signaling pathway.	Nicotine dependence	873 Finnish ancestry cases and 842 Finnish ancestry controls from 739 families	NA	5p14.2	NR	rs374098-T	0.06049	7E-6		0.1679786	[0.09-0.24] unit increase	Illumina [9469131] (imputed)	N
771	chr5	24478825	24478826	rs4701446	29495422	Xu H	2018-02-26	J Pers Med	A Genome-Wide Association Study of Idiopathic Dilated Cardiomyopathy in African Americans.	Idiopathic dilated cardiomyopathy	662 African American cases, 1,138 African American controls	NA	5p14.2	PRDM9, CDH10	rs4701446-G	0.231	3E-6		1.2	[1.3-5.98]	Affymetrix [up to 27494467] (imputed)	N
771	chr5	24482474	24482475	rs1428365	33109212	Chang H	2020-10-28	BMC Med	Genetic architecture of cardiometabolic risks in people living with HIV.	HDL cholesterol levels in HIV infection	3,095 European ancestry individuals, 3,189 African American individuals	NA	5p14.2	C5orf17, CDH10	rs1428365-?		4E-6	(African American)	0.16326945	[0.094-0.232] unit increase	Illumina [13620258] (imputed)	N
771	chr5	24490704	24490705	rs10473688	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	5p14.2	NR	rs10473688-?	NR	2E-6				Affymetrix [NR]	N
772	chr5	24557312	24557312	rs5866671	33239696	Steinthorsdottir V	2020-11-25	Nat Commun	Genetic predisposition to hypertension is associated with preeclampsia in European and Central Asian women.	Preeclampsia (fetal genotype effect)	2,145 Central Asian ancestry cases, 2,027 Central Asian ancestry controls, 4,630 European ancestry cases, 373,345 European ancestry controls	452 Kazakh ancestry cases, 361 Kazakh ancestry controls, 580 European ancestry cases, 760 European ancestry controls	5p14.2		rs5866671-T	0.2	2E-7		1.17	[1.1-1.25]	Illumina [12130433] (imputed)	N
773	chr5	24728455	24728456	rs7735176	32574161	Dapas M	2020-06-23	PLoS Med	Distinct subtypes of polycystic ovary syndrome with novel genetic associations: An unsupervised, phenotypic clustering analysis.	Polycystic ovary syndrome (reproductive subtype)	123 European ancestry cases, 2,964 European ancestry controls	84 European ancestry cases, 1,134 European ancestry controls	5p14.1	CDH10	rs7735176-A	0.01	1E-8		5.09	2.62-9.86	Illumina [NR] (imputed)	N
773	chr5	24738777	24738778	rs76969957	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	5p14.1	NR	rs76969957-?	NR	1E-9				Illumina [7760689] (imputed)	N
774	chr5	24813005	24813006	rs149500342	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (hospitalized covid vs population)	613 European ancestry cases, 680,416 European ancestry controls, 140 Hispanic or Latin American cases, 94,327 Hispanic or Latin American controls, 49 Black or African American cases, 22,410 Black or African American controls	NA	5p14.1		rs149500342-?	NR	2E-6		0.8170401	[0.48-1.16] unit increase	Illumina [9875426] (imputed)	N
774	chr5	24813005	24813006	rs149500342	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid respiratory support vs population)	495 European ancestry cases, 680,440 European ancestry controls, 102 Hispanic or Latin American cases, 94,330 Hispanic or Latin American controls, 39 Black or African American cases, 22,410 Black or African American controls	NA	5p14.1		rs149500342-?	NR	1E-7		0.9597495	[0.6-1.32] unit increase	Illumina [9842460] (imputed)	N
774	chr5	24900759	24900760	rs33920398	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first birth	542,901 European ancestry individuals	NA	5p14.1	LOC340107	rs33920398-T	0.7232	4E-8		0.0573	[0.037-0.078] unit increase	NR [9744772] (imputed)	N
775	chr5	24921397	24921398	rs435538	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	5p14.1	LOC340107	rs435538-C	0.769066	3E-12		0.0170207	[0.012-0.022] unit increase	NR [16516521] (imputed)	N
775	chr5	24942397	24942398	rs333527	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	5p14.1	NR	rs333527-?	NR	2E-6		4.735	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
775	chr5	24964678	24964678	rs1209242873	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5p14.1	NR	rs1209242873-A	0.01045	3E-8	(KATNAL2)	0.06868	NR unit increase	Illumina [1671387] (imputed)	N
775	chr5	25011523	25011524	rs9784649	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	5p14.1	NR	rs9784649-?	NR	8E-6	(AA)	14.32	[12.85-15.79]	Illumina [905956]	N
776	chr5	25035999	25036000	rs375279684	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	5p14.1	RP11-549K20.1	rs375279684-A	0.9962	6E-6		1.0285	[0.58-1.47] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
776	chr5	25036830	25036831	rs78683083	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	5p14.1	NR	rs78683083-?	NR	6E-9				Illumina [7760689] (imputed)	N
776	chr5	25081844	25081845	rs370838138	31308545	Watson HJ	2019-07-15	Nat Genet	Genome-wide association study identifies eight risk loci and implicates metabo-psychiatric origins for anorexia nervosa.	Anorexia nervosa	16,992 European ancestry cases, 55,525 European ancestry controls	NA	5p14.1	CDH10	rs370838138-G	0.56	3E-8		1.08	[1.06-1.1]	Affymetrix, Illumina [at least 8111819] (imputed)	N
777	chr5	25199152	25199153	rs111257433	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	5p14.1	CDH10	rs111257433-A	0.14	5E-10		0.0106	[0.0073-0.0139] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
777	chr5	25296445	25296446	rs148840332	34047840	Vicuna L	2021-05-28	Hum Genet	Novel loci and mapuche genetic ancestry are associated with pubertal growth traits in Chilean boys.	Age at peak height velocity	440 Chilean boys, 464 Chilean girls	NA	5p14.1	RP11-184E9.1	rs148840332-?	NR	3E-7	(boys)	1.96	[NR] unit increase	Illumina [774433] (imputed)	N
778	chr5	25322033	25322034	rs931924	29036319	Qi H	2017-09-26	Hum Mol Genet	Discovery of susceptibility loci associated with tuberculosis in Han Chinese.	Tuberculosis	972 Chinese ancestry cases, 1,316 Gambian ancestry cases, 1,537 Chinese ancestry controls, 1,382 Gambian ancestry controls	NA	5p14.1	NR	rs931924-?	NR	5E-7				Illumina [7333833] (imputed)	N
778	chr5	25323706	25323707	rs11958933	29036319	Qi H	2017-09-26	Hum Mol Genet	Discovery of susceptibility loci associated with tuberculosis in Han Chinese.	Tuberculosis	972 Chinese ancestry cases, 1,316 Gambian ancestry cases, 1,537 Chinese ancestry controls, 1,382 Gambian ancestry controls	NA	5p14.1	NR	rs11958933-?	NR	6E-7				Illumina [7333833] (imputed)	N
778	chr5	25378424	25378425	rs114013403	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Chromobacteriaceae abundance in stool	5,959 Finnish ancestry individuals	NA	5p14.1		rs114013403-G	0.0190911	5E-9		0.0749445	[0.05-0.1] unit decrease	Illumina [7980478] (imputed)	N
778	chr5	25420088	25420089	rs1904173	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	5p14.1	NR	rs1904173-G	0.86006371714922	7E-6	(IGP32)	0.201	[0.11-0.29] unit increase	Illumina [~ 2500000] (imputed)	N
779	chr5	25438388	25438388	rs564885564	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental longevity (combined parental age at death)	45,627 middle-aged British individuals	NA	5p14.1	NR	rs564885564-?	NR	9E-6		0.16262	[0.091-0.235] unit decrease	Affymetrix [9658292] (imputed)	N
780	chr5	25572300	25572301	rs6876547	24821223	Mattheisen M	2014-05-13	Mol Psychiatry	Genome-wide association study in obsessive-compulsive disorder: results from the OCGAS.	Obsessive-compulsive disorder	1,406 cases and 1,489 controls from 1,065 families, 192 cases, 1,984 controls	NA	5p14.1	CDH10, MSNL1	rs6876547-?	NR	2E-6				Illumina [549123]	N
780	chr5	25669439	25669440	rs116783165	32131869	Arbeeva L	2020-03-04	J Foot Ankle Res	Genome-wide meta-analysis identified novel variant associated with hallux valgus in Caucasians.	Hallux valgus	2,314 European ancestry cases, 3,611 European ancestry controls	NA	5p14.1	CTD-2533 K21.1	rs116783165-C	0.03	2E-6		1.72	[1.37-2.15]	Affymetrix, Illumina [up to 7729175] (imputed)	N
781	chr5	25692972	25692973	rs193741	23279374	Athanasiadis G	2013-01-02	J Thromb Haemost	Genetic determinants of plasma ??-glycoprotein I levels: a genome-wide association study in extended pedigrees from Spain.	&beta;2-Glycoprotein I (&beta;2-GPI) plasma levels	306 European ancestry individuals	NA	5p14.1	CDH10, CDH9	rs193741-A	0.14	2E-6		0.64	unit decrease	Illumina [283437]	N
781	chr5	25751854	25751855	rs146585816	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5p14.1	NR	rs146585816-C	0.01568	2E-8	(HSPA6)	0.02616	NR unit increase	Illumina [1671387] (imputed)	N
781	chr5	25760678	25760679	rs7727656	19668339	Potkin SG	2009-08-07	PLoS One	Hippocampal atrophy as a quantitative trait in a genome-wide association study identifying novel susceptibility genes for Alzheimer's disease.	Hippocampal atrophy	162 European ancestry cases, 192 European ancestry controls, 7 African American cases, 14 African American controls, 1 Asian ancestry cases, 3 Asian ancestry controls, 2 cases	NA	5p14.1	intergenic	rs7727656-?	NR	8E-6				Illumina [516645]	N
781	chr5	25808398	25808399	rs7703602	30694715	Sakornsakolpat P	2019-01-29	Am J Respir Cell Mol Biol	Genome-Wide Association Analysis of Single Breath Diffusing Capacity of Carbon Monoxide (DLCO).	Diffusing capacity of carbon monoxide	2,584 European ancestry individuals with chronic obstructive pulmonary disease, 3,002 European ancestry healthy individuals, 343 African American individuals with chronic obstructive pulmonary disease, 1,006 African American healthy individuals	NA	5p14.1	CDH9	rs7703602-A	0.11	3E-7	(African American)	0.33	0.2-0.45 unit increase	Illumina [NR] (imputed)	N
782	chr5	25841612	25841613	rs396045	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	5p14.1	intergenic	rs396045-A	0.247	7E-6	(Diet carbohydrate )	0.03	[NR] %energy increase	Illumina [899892]	N
782	chr5	25902341	25902342	rs10038113	19456320	Ma D	2009-05-28	Ann Hum Genet	A genome-wide association study of autism reveals a common novel risk locus at 5p14.1.	Autism	1,390 European ancestry individuals from 438 families	2,390 European ancestry individuals from 457 families	5p14.1	intergenic	rs10038113-T	0.59	3E-6		1.33	[1.11-1.43]	Illumina [775311]	N
782	chr5	25907908	25907909	rs6414928	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 5, width of mouth relative to central midface)	2,187 European ancestry individuals	NA	5p14.1	NR	rs6414928-A	0.215	3E-7		0.1868	[0.12-0.26] unit increase	Illumina [10677593] (imputed)	N
783	chr5	25965043	25965044	rs141992220	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-hip ratio	1,254 whole genome sequenced European ancestry individuals, 3,071 whole genome sequenced individuals, 29,723 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,053 Mylopotamos (founder/genetic isolate) individuals, 879 Pomak (founder/genetic isolate) individuals	206,053 European ancestry individuals	5p14.1	RNU4-43P	rs141992220-T	0.01	6E-7		0.2694	[0.16-0.38] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
783	chr5	25967702	25967703	rs4307059	19404256	Wang K	2009-04-28	Nature	Common genetic variants on 5p14.1 associate with autism spectrum disorders.	Autism	3,101 European ancestry individuals from 780 families, 1,204 European ancestry cases, 6,491 European ancestry controls	1,390 European ancestry individuals from 447 families, 108 European ancestry cases, 540 European ancestry controls		CDH10, CDH9	rs4307059-T	0.61	2E-10		1.19	[NR]	Illumina [474019]	N
783	chr5	26013261	26013262	rs4533855	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	5p14.1	CDH9	rs4533855-C	0.555	1E-10		0.0076	[0.0052-0.01] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
783	chr5	26016362	26016363	rs10067113	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	5p14.1	CDH9	rs10067113-T	0.6227	1E-8		0.011486698	[0.0076-0.0154] unit increase	Illumina [9339358] (imputed)	N
783	chr5	26029546	26029547	rs4992300	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	5p14.1		rs4992300-?	NR	1E-9				NR [~ 8900000] (imputed)	N
784	chr5	26090930	26090931	rs375814288	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,931 Sub-Saharan African ancestry males	NA	5p14.1		rs375814288-G	0.97776	7E-6		0.0386045	[0.021-0.057] unit decrease	Illumina [13900000] (imputed)	N
784	chr5	26097105	26097106	rs142027653	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,931 Sub-Saharan African ancestry males	NA	5p14.1		rs142027653-G	0.977245	9E-6		0.0379215	[0.02-0.056] unit decrease	Illumina [13900000] (imputed)	N
784	chr5	26139137	26139138	rs4701523	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral fat	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	5p14.1	CDH9	rs4701523-T	0.06	3E-6	(men)			Affymetrix, Illumina [2500000] (imputed)	N
784	chr5	26160517	26160518	rs139083458	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-13 levels	3,557 Finnish ancestry individuals	NA	5p14.1	NR	rs139083458-C		3E-6		0.9902	[0.58-1.4] SD units decrease	NR [10700000] (imputed)	N
785	chr5	26238552	26238553	rs142783128	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interferon gamma levels	7,701 Finnish ancestry individuals	NA	5p14.1	NR	rs142783128-C		8E-6		0.1894	[0.11-0.27] SD units increase	NR [10700000] (imputed)	N
786	chr5	26372562	26372563	rs4565182	33002292	Shinohara T	2020-10-01	J Cell Mol Med	Inherited genetic variants associated with glucocorticoid sensitivity in leukaemia cells.	Glucocorticoid receptor gene expression in B-cell precursor acute lymphoblastic leukaemia	72 Japanese ancestry leukaemic cell lines	NA	5p14.1	intergenic	rs4565182-?	NR	4E-6				Illumina [331281]	N
786	chr5	26389261	26389262	rs969088	22872573	Hu L	2012-08-07	Clin Cancer Res	Genome-wide association study of prognosis in advanced non-small cell lung cancer patients receiving platinum-based chemotherapy.	Response to platinum-based chemotherapy in non-small-cell lung cancer	528 Han Chinese ancestry cases	340 Han Chinese ancestry cases, 409 European ancestry cases	5p14.1	CDH9	rs969088-C	NR	3E-6	(Han Chinese + EA)	1.4	[1.22-1.61]	NR [576351]	N
786	chr5	26389261	26389262	rs969088	22872573	Hu L	2012-08-07	Clin Cancer Res	Genome-wide association study of prognosis in advanced non-small cell lung cancer patients receiving platinum-based chemotherapy.	Response to platinum-based chemotherapy in non-small-cell lung cancer	528 Han Chinese ancestry cases	340 Han Chinese ancestry cases, 409 European ancestry cases	5p14.1	CDH9	rs969088-C	NR	2E-6	(Han Chinese)	1.43	[1.24-1.66]	NR [576351]	N
786	chr5	26402249	26402250	rs7708945	28030426	Mahmoudpour SH	2017-03-27	Pharmacogenet Genomics	Meta-analysis of genome-wide association studies on the intolerance of angiotensin-converting enzyme inhibitors.	Angiotensin-converting enzyme inhibitor intolerance	972 European ancestry intolerant individuals, 4,189 European ancestry tolerant individuals	NA	5p14.1	APC	rs7708945-?	0.030749	9E-6		3.666179	[2.066661-6.503664]	Affymetrix, Illumina [NR] (imputed)	N
786	chr5	26420654	26420655	rs112087783	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5p14.1	NR	rs112087783-C	0.01916	1E-8	(APOC1)	0.02944	NR unit increase	Illumina [1671387] (imputed)	N
786	chr5	26430824	26430825	rs13169349	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Sutterella)	1,068 Japanese ancestry individuals	NA	5p14.1	intergenic	rs13169349-T	0.27	8E-6	(female)	0.0364	[0.021-0.052] unit increase	Illumina [6380737] (imputed)	N
787	chr5	26493544	26493545	rs185190675	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Fusobacterium A abundance in stool	5,959 Finnish ancestry individuals	NA	5p14.1		rs185190675-C	0.0122136	1E-9		0.17501	[0.12-0.23] unit increase	Illumina [7980478] (imputed)	N
787	chr5	26526638	26526639	rs182625293	32141793	Garman L	2020-03-06	Ocul Immunol Inflamm	Genome-Wide Association Study of Ocular Sarcoidosis Confirms HLA Associations and Implicates Barrier Function and Autoimmunity in African Americans.	Ocular sarcoidosis	260 African American cases, 1,551 African American controls	NA	5p14.1	NR	rs182625293-G	NR	3E-6		4.925	[2.52-9.63]	Illumina [13976150] (imputed)	N
787	chr5	26568242	26568243	rs6452345	27236921	Rautanen A	2016-06-02	Am J Hum Genet	Polymorphism in a lincRNA Associates with a Doubled Risk of Pneumococcal Bacteremia in Kenyan Children.	Pneumococcal bacteremia	429 African ancestry cases, 2,677 African ancestry controls	113  African ancestry cases, 1,336 African ancestry controls	5p14.1	intergenic	rs6452345-?	NR	5E-6		3.22	[NR]	Affymetrix [up to 10996499] (imputed)	N
788	chr5	26655796	26655797	rs1390638	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota alpha diversity (PD_whole_tree index)	1,068 Japanese ancestry individuals	NA	5p14.1	intergenic	rs1390638-A	0.35	3E-6	(female)	1.22	[0.71-1.73] unit decrease	Illumina [6380737] (imputed)	N
788	chr5	26655796	26655797	rs1390638	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota alpha diversity (Chao1 index)	541 Japanese ancestry women	NA	5p14.1	intergenic	rs1390638-A	0.35	1E-6		51.2	[30.82-71.58] unit decrease	Illumina [545605]	N
788	chr5	26671350	26671351	rs76054107	31455332	Zhang Y	2019-08-28	BMC Med	Dissecting genetic factors affecting phenylephrine infusion rates during anesthesia: a genome-wide association study employing EHR data.	Phenylephrine infusion rate during anesthesia	1,534 European ancestry individuals	NA	5p14.1	MSNP1, CCNB3P1	rs76054107-T	0.02113	6E-6		10.76	[6.09-15.42] unit increase	Illumina [up to 4929806] (imputed)	N
788	chr5	26685509	26685510	rs116272744	32141793	Garman L	2020-03-06	Ocul Immunol Inflamm	Genome-Wide Association Study of Ocular Sarcoidosis Confirms HLA Associations and Implicates Barrier Function and Autoimmunity in African Americans.	Ocular sarcoidosis	260 African American cases, 1,551 African American controls	NA	5p14.1	NR	rs116272744-G	NR	2E-6		4.518	[2.43-8.41]	Illumina [13976150] (imputed)	N
788	chr5	26723782	26723783	rs4479806	21079607	Wang K	2010-11-16	Mol Psychiatry	A genome-wide association study on common SNPs and rare CNVs in anorexia nervosa.	Anorexia nervosa	1,033 European ancestry cases, 3,733 European ancestry controls	NA	5p14.1	CDH9	rs4479806-?	0.10	8E-6				Illumina [~ 598000]	N
789	chr5	26746382	26746383	rs116688600	25187353	Goldstein JI	2014-09-04	Nat Commun	Clozapine-induced agranulocytosis is associated with rare HLA-DQB1 and HLA-B alleles.	Clozapine-induced agranulocytosis	161 European ancestry cases, 1,196 European ancestry clozapine-treated and untreated controls	NA	5p14.1	intergenic	rs116688600-C	0.0196	9E-6		5.07	[4.35-5.79]	Illumina [8809853] (imputed)	N
789	chr5	26774141	26774142	rs4263475	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	5p14.1		rs4263475-A	0.5814	4E-8		0.0078	[0.0051-0.0105] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
789	chr5	26774141	26774142	rs4263475	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	5p14.1	Intergenic	rs4263475-A	0.5814	1E-8	(MTAG)	0.0076	[0.0051-0.0101] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
789	chr5	26779973	26779974	rs905838	33232274	Mohammadnejad A	2020-11-24	Aging (Albany NY)	Generalized correlation coefficient for genome-wide association analysis of cognitive ability in twins.	Cognitive function (generalized correlation coefficient)	900 Danish ancestry dizygotic twins, 272 Danish ancestry monozygotic twins	NA	5p14.1	NR	rs905838-?	NR	2E-8			[NR]	Illumina [5779266] (imputed)	N
789	chr5	26862600	26862601	rs7718060	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5p14.1	NR	rs7718060-T	0.0122	4E-10	(TXNL1)	0.07122	NR unit increase	Illumina [1671387] (imputed)	N
790	chr5	26876667	26876667	rs201058683	26545240	Giri A	2015-11-06	PLoS One	Genetic Determinants of Pelvic Organ Prolapse among African American and Hispanic Women in the Women's Health Initiative.	Pelvic organ prolapse (moderate/severe)	154 African American cases, 948 African American controls, 163 Hispanic cases, 305 Hispanic controls	NA	5p14.1	CDH9	rs201058683-AT	0.21	2E-7	(AA)	2.47	[1.76-3.47]	Affymetrix [at least 730985] (imputed)	N
790	chr5	26880924	26880925	rs75973558	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	5p14.1	NR	rs75973558-A	0.112326	9E-9		0.05713083	[0.038-0.077] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
790	chr5	26880924	26880925	rs75973558	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	5p14.1	Intergenic	rs75973558-A	0.8738	3E-8	(MTAG)	0.015	[0.0097-0.0203] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
790	chr5	26880924	26880925	rs75973558	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	5p14.1	Intergenic	rs75973558-A	0.8739	1E-14	(MTAG)	0.0192	[0.014-0.024] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
790	chr5	26880924	26880925	rs75973558	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	5p14.1		rs75973558-A	0.8736	3E-14	(conditional-joint)	0.0164	[0.012-0.021] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
790	chr5	26880924	26880925	rs75973558	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	5p14.1	Intergenic	rs75973558-A	0.8688	3E-14	(MTAG)	0.0259	[0.019-0.033] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
790	chr5	26880924	26880925	rs75973558	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	5p14.1	Intergenic	rs75973558-A	0.8688	7E-9		0.0246	[0.016-0.033] unit increase	Affymetrix, Illumina [10100000] (imputed)	N
790	chr5	26880924	26880925	rs75973558	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	5p14.1	NR	rs75973558-A	NR	9E-9		5.741	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
790	chr5	26881495	26881496	rs375707694	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Lipoprotein (a) levels	348,806 European ancestry individuals	NA	5p14.1		rs375707694-?	NR	2E-9		1.66522	[0.95-2.38] unit decrease	NR [9800000] (imputed)	N
790	chr5	26883151	26883151	rs10536720	30718321	Sanchez-Roige S	2019-02-04	J Neurosci	Genome-wide association studies of impulsive personality traits (BIS-11 and UPPSP) and drug experimentation in up to 22,861 adult research participants identify loci in the CACNA1I and CADM2 genes.	Impulsivity (attentional)	21,876 European ancestry individuals	NA	5p14.1	CDH9	rs10536720-?	0.9044	9E-7		0.093	[0.056-0.130] unit increase	Illumina [11455070] (imputed)	N
790	chr5	26896954	26896955	rs115017135	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	5p14.1		rs115017135-A	0.0409	5E-8		0.0206	[0.013-0.028] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
790	chr5	26898628	26898629	rs13168136	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	5p14.1		rs13168136-A	0.7668	3E-8		0.0092	[0.0059-0.0125] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
790	chr5	26913773	26913774	rs17563464	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	5p14.1		rs17563464-?	NR	1E-12				NR [~ 8900000] (imputed)	N
790	chr5	26913773	26913774	rs17563464	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	5p14.1		rs17563464-A	0.2173	2E-17		0.0147	[0.011-0.018] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
790	chr5	26913773	26913774	rs17563464	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	5p14.1	Intergenic	rs17563464-A	0.2173	3E-19	(MTAG)	0.0144	[0.011-0.018] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
790	chr5	26928046	26928047	rs55769264	31235808	Shungin D	2019-06-24	Nat Commun	Genome-wide analysis of dental caries and periodontitis combining clinical and self-reported data.	Number of decayed, missing and filled tooth surfaces or use of dentures	14,976 European ancestry individuals with decayed, missing or filled tooth surface measurement, 11,816 Hispanic/Latino individuals with decayed, missing or filled tooth surface measurement, 77,714 European ancestry dentures cases, 383,317 European ancestry controls	NA	5p14.1	CDH9	rs55769264-A	0.45	3E-8		0.015	[0.0097-0.0203] unit increase	Affymetrix, Illumina [~ 8900000] (imputed)	N
790	chr5	26928046	26928047	rs55769264	31235808	Shungin D	2019-06-24	Nat Commun	Genome-wide analysis of dental caries and periodontitis combining clinical and self-reported data.	Dentures	77,714 European ancestry cases, 383,317 European ancestry controls	NA	5p14.1	CDH9	rs55769264-A	0.45	9E-8		0.03	[0.019-0.041] unit increase	Affymetrix [at least 8900000] (imputed)	N
790	chr5	26928065	26928066	rs10057565	23870195	Wojczynski MK	2013-07-19	BMC Med Genet	Genetics of coronary artery calcification among African Americans, a meta-analysis.	Coronary artery calcification	5,823 African American individuals	9,992 European ancestry individuals	5p14.1	CDH9	rs10057565-T	0.83	8E-6	(AA)	0.2	[0.12-0.28] unit increase	Affymetrix, Illumina [up to 2727966] (imputed)	N
790	chr5	26951396	26951397	rs12153566	28247064	Deming Y	2017-02-28	Acta Neuropathol	Genome-wide association study identifies four novel loci associated with Alzheimer's endophenotypes and disease modifiers.	Cerebrospinal fluid AB1-42 levels	3,146 individuals	NA	5p14.1	CDH9	rs12153566-T	0.186	1E-6		0.026	[0.016-0.036] unit decrease	Illumina [7358575] (imputed)	N
790	chr5	26972682	26972683	rs1946473	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms	688,809 individuals	NA	5p14.1	NR	rs1946473-?		3E-8				NR [11140414]	N
790	chr5	26972682	26972683	rs1946473	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depression	688,809 European ancestry individuals	NA	5p14.1	NR	rs1946473-A	NR	3E-8		5.548	z score decrease	Affymetrix [10847151] (imputed)	N
791	chr5	27001330	27001331	rs6869941	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	5p14.1	NR	rs6869941-T	0.495885672861347	1E-8		0.0070159207	[0.0046-0.0094] unit decrease	NR [NR]	N
791	chr5	27024535	27024536	rs10805794	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	5p14.1		rs10805794-?	NR	2E-8		0.0166	unit decrease	NR [NR]	N
791	chr5	27025399	27025400	rs3811935	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	5p14.1	NR	rs3811935-G	0.496731017615546	2E-9		0.005497991	[0.0037-0.0073] unit decrease	NR [NR]	N
791	chr5	27025399	27025400	rs3811935	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	5p14.1	NR	rs3811935-G	0.496731017615546	8E-9		0.0066402527	[0.0044-0.0089] unit decrease	NR [NR]	N
791	chr5	27025399	27025400	rs3811935	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	5p14.1	NR	rs3811935-G	0.496731017615546	4E-9		0.00861928	[0.0057-0.0115] unit decrease	NR [NR]	N
791	chr5	27025399	27025400	rs3811935	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	5p14.1	NR	rs3811935-G	0.496731017615546	4E-9		0.0054969667	[0.0037-0.0073] unit decrease	NR [NR]	N
792	chr5	27186260	27186260	rs141247449	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	5p14.1		rs141247449-ATT	NR	4E-8		0.0127	[0.0082-0.0172] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
792	chr5	27186260	27186260	rs141247449	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	5p14.1		rs141247449-ATT	NR	1E-10		0.0167	[0.012-0.022] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
792	chr5	27188817	27188818	rs72740699	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	5p14.1	NR	rs72740699-?	NR	7E-10				Affymetrix [~ 8270000] (imputed)	N
792	chr5	27188817	27188818	rs72740699	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	5p14.1		rs72740699-?	NR	1E-9				NR [~ 8900000] (imputed)	N
792	chr5	27193572	27193573	rs6890310	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	5p14.1	NA	rs6890310-A	0.2923	3E-10		0.0119	[0.0082-0.0156] unit decrease	NR [~ 27400000] (imputed)	N
792	chr5	27193572	27193573	rs6890310	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	5p14.1	NA	rs6890310-A	0.2923	3E-10		0.0119	[0.0082-0.0156] unit decrease	NR [~ 27400000] (imputed)	N
793	chr5	27279222	27279223	rs183273184	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Platelet-derived growth factor BB levels	8,293 Finnish ancestry individuals	NA	5p14.1	NR	rs183273184-G		2E-6		0.4946	[0.29-0.7] SD units increase	NR [10700000] (imputed)	N
793	chr5	27305641	27305642	rs6896867	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	5p14.1	Intergenic	rs6896867-A	0.7062	2E-8	(MTAG)	0.0102	[0.0067-0.0137] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
793	chr5	27305641	27305642	rs6896867	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	5p14.1	Intergenic	rs6896867-A	0.7067	3E-9	(MTAG)	0.0086	[0.0057-0.0115] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
794	chr5	27460204	27460205	rs10077887	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	5p14.1	NR	rs10077887-?	NR	8E-6	(Native Hawaiian)	0.5383	[NR] unit increase	Illumina [up to 11892802] (imputed)	N
794	chr5	27487030	27487031	rs11951177	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Initial pursuit acceleration	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	5p14.1	LINC01021	rs11951177-A	0.1074	4E-6	(African)			Illumina [4404269] (imputed)	N
795	chr5	27558546	27558547	rs184974167	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Platelet-derived growth factor BB levels	8,293 Finnish ancestry individuals	NA	5p14.1	NR	rs184974167-C		2E-6		0.4504	[0.26-0.64] SD units increase	NR [10700000] (imputed)	N
795	chr5	27611430	27611431	rs12054895	23377640	GENDEP Investigators	2013-02-01	Am J Psychiatry	Common genetic variation and antidepressant efficacy in major depressive disorder: a meta-analysis of three genome-wide pharmacogenetic studies.	Major depressive disorder	Up to 2,256 European ancestry cases	NA	5p14.1	intergenic	rs12054895-T	0.275456	3E-8	(% improvement - SSRI treated - 2 weeks)	0.2428	[0.16-0.33] unit increase	Affymetrix, Illumina [1200000] (imputed)	N
795	chr5	27636791	27636792	rs10214145	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	5p14.1		rs10214145-?	NR	1E-10				NR [~ 8900000] (imputed)	N
795	chr5	27646818	27646819	rs7445608	26265699	Karol SE	2015-08-11	Blood	Genetics of glucocorticoid-associated osteonecrosis in children with acute lymphoblastic leukemia.	Glucocorticoid-induced osteonecrosis (age 10 years and older)	230 osteonecrosis cases, 1,238 treated controls	NA	5p14.1	CDH9	rs7445608-?	NR	4E-6				Affymetrix, Illumina [NR] (imputed)	N
796	chr5	27761651	27761652	rs183275372	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Platelet-derived growth factor BB levels	8,293 Finnish ancestry individuals	NA	5p14.1	NR	rs183275372-C		4E-6		0.4292	[0.24-0.62] SD units decrease	NR [10700000] (imputed)	N
796	chr5	27776290	27776291	rs6882059	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	5p14.1	Intergenic	rs6882059-T	0.6408	3E-8	(MTAG)	0.0095	[0.0062-0.0128] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
797	chr5	27817188	27817189	rs4074741	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	5p14.1	NR	rs4074741-?	NR	4E-7		5.05	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
798	chr5	27986432	27986433	rs7723726	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5p14.1	NR	rs7723726-T	0.0122	2E-8	(ME1)	0.1112	NR unit decrease	Illumina [1671387] (imputed)	N
798	chr5	27997007	27997008	rs116390453	34469433	Ashvetiya T	2021-09-01	PLoS One	Identification of novel genetic susceptibility loci for thoracic and abdominal aortic aneurysms via genome-wide association study using the UK Biobank Cohort.	Abdominal aortic aneurysm	1,363 European, Indian, Caribbean, African ancestry cases, 27,260  European, Indian, Caribbean, African ancestry controls	NA	5p14.1		rs116390453-?	NR	4E-9		2.50494	[1.84-3.4]	NR [NR] (imputed)	N
799	chr5	28096208	28096209	rs115000927	33824429	Fjukstad KK	2021-04-06	Pharmacogenomics J	Genetic variants associated with cardiometabolic abnormalities during treatment with selective serotonin reuptake inhibitors: a genome-wide association study.	LDL levels x SSRI defined daily dose interaction in schizophrenia or bipolar disorder	1,180 European ancestry individuals	NA	5p14.1	AC010455.1	rs115000927-A	NR	1E-8		1.02638	[0.68-1.38] unit increase	Illumina [NR] (imputed)	N
799	chr5	28138580	28138581	rs115590131	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Subjective well-being	298,420 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	5p14.1	NR	rs115590131-T	0.0106	6E-6		0.08143611	[0.046-0.117] unit increase	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
800	chr5	28184478	28184479	rs75298135	28736931	Rotroff DM	2017-07-24	Clin Pharmacol Ther	Genetic Variants in HSD17B3, SMAD3, and IPO11 Impact Circulating Lipids in Response to Fenofibrate in Individuals With Type 2 Diabetes.	Total cholesterol change in response to fenofibrate in statin-treated type 2 diabetes	781 European ancestry individuals, 138 African American ancestry individuals, 345 unknown ancestry individuals		5p14.1	intergenic	rs75298135-?	NR	4E-7	(AA)	0.065	unit increase	Affymetrix, Illumina [8129838] (imputed)	N
800	chr5	28235645	28235646	rs34204420	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body fat mass	3,399 whole genome sequenced individuals, 11,802 European ancestry individuals	10,670 European ancestry individuals	5p14.1	RP11-560A7.1	rs34204420-A	0.9877	9E-6		0.2588	[0.14-0.37] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
800	chr5	28292891	28292892	rs140087759	28548082	Southam L	2017-05-26	Nat Commun	Whole genome sequencing and imputation in isolated populations identify genetic associations with medically-relevant complex traits.	Waist-hip ratio	up to 1,476 Mylopotamos (founder/genetic isolate) individuals, up to 1,737 Pomak (founder/genetic isolate) individuals	NA	5p14.1	CTD- 2061E9.1	rs140087759-T	0.01	1E-8	(Mylopotamos)	1.189	[0.78-1.60] unit increase	Illumina [at least 13541454] (imputed)	N
801	chr5	28340172	28340173	rs11949289	22041458	Clark SL	2011-11-01	Psychol Med	Pharmacogenomic study of side-effects for antidepressant treatment options in STAR*D.	Response to anti-depressant treatment in major depressive disorder	1,151 European ancestry cases, 288 African American cases	NA	5p14.1	intergenic	rs11949289-T	0.42	2E-7	(Venlafaxine, Dizziness)			Affymetrix [421789]	N
801	chr5	28363861	28363862	rs13359577	34838041	Naderi E	2021-11-27	J Transl Med	A two-stage genome-wide association study of radiation-induced acute toxicity in head and neck cancer.	radiation-induced toxicity (physician-rated acute sticky saliva)	859 Dutch ancestry individuals	246 Dutch ancestry individuals	5p14.1		rs13359577-A	NR	1E-6		0.094816744	[0.056-0.134] decrease	Illumina [6334277] (imputed)	N
802	chr5	28549180	28549181	rs4867568	27696742	Yau MS	2016-10-01	Arthritis Rheumatol	Genome-Wide Association Study of Radiographic Knee Osteoarthritis in North American Caucasians.	Knee osteoarthritis	2,672 European ancestry cases, 1,776 European ancestry controls	1,226 European ancestry cases, 1,392 European ancestry controls	5p14.1	LSP1P3	rs4867568-C	0.5	3E-6		1.1904762	[1.1-1.27]	Illumina [at least 8248570] (imputed)	N
803	chr5	28577933	28577934	rs150631144	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		5p14.1	Intergenic	rs150631144-T	0.002	1E-7	(liability model)	1.13	[0.72-1.54] unit increase	NR [19725427] (imputed)	N
803	chr5	28617703	28617704	rs146843658	30287806	Zhou H	2018-10-04	Transl Psychiatry	Genome-wide association study identifies glutamate ionotropic receptor GRIA4 as a risk gene for comorbid nicotine dependence and major depression.	Nicotine dependence and major depression (severity of comorbidity)	3,724 African American individuals	NA	5p14.1	Intergenic	rs146843658-C	0.979	6E-6		1.7068	[0.97-2.44] unit increase	Illumina [9520174] (imputed)	N
803	chr5	28665951	28665952	rs116606120	28043905	Nicoletti P	2016-12-30	Gastroenterology	Association of Liver Injury From Specific Drugs, or Groups of Drugs, With Polymorphisms in HLA and Other Genes in a Genome-Wide Association Study.	Drug-induced liver injury (fluoroquinolones)	43 European ancestry cases, 10,588 European ancestry controls	NA	5p14.1		rs116606120-?		3E-7		8.6	3.79-19.5	Illumina [505740] (imputed)	N
803	chr5	28676115	28676116	rs13354619	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Large artery stroke	350 Indian ancestry cases, 2,154 Indian ancestry controls	NA	5p14.1		rs13354619-?	NR	2E-6		1.137318	[1.07852628800652-1.19931464652818]	Illumina [up to 7827597] (imputed)	N
803	chr5	28696503	28696504	rs16897978	24962325	Kapoor M	2014-06-11	Drug Alcohol Depend	Genome-wide survival analysis of age at onset of alcohol dependence in extended high-risk COGA families.	Alcohol dependence (age at onset)	685 European ancestry cases, 1,103 European ancestry controls from 118 families	NA	5p14.1	NR	rs16897978-C	0.05	5E-6		1.53	[1.35-1.71]	Illumina [4058415] (imputed)	N
804	chr5	28745381	28745382	rs181769662	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5p14.1	NR	rs181769662-G	0.01045	3E-8	(ATP5F1D)	0.04396	NR unit increase	Illumina [1671387] (imputed)	N
804	chr5	28747322	28747323	rs2548003	17903296	Kiel DP	2007-09-19	BMC Med Genet	Genome-wide association with bone mass and geometry in the Framingham Heart Study.	Hip geometry	Up to 1,094 individuals from 241 families	NA	5p14.1	intergenic	rs2548003-?	NR	2E-7	(NeckZ1rf)			Affymetrix [70897]	N
804	chr5	28750306	28750307	rs7713675	27958378	Floyd JS	2016-12-13	Pharmacogenomics J	Large-scale pharmacogenomic study of sulfonylureas and the QT, JT and QRS intervals: CHARGE Pharmacogenomics Working Group.	JT interval (sulfonylurea treatment interaction)	2,095 European ancestry exposed individuals, 42,907 European ancestry unexposed individuals, 1,167 African American exposed individuals, 10,564 African American unexposed individuals, 794 Hispanic/Latino American exposed individuals, 14,330 Hispanic/Latino American unexposed individuals	NA	5p14.1	LSP1P3	rs7713675-?	NR	1E-8	(AA)	12.2	[8.08-16.32] ms decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
805	chr5	28949309	28949310	rs144414988	33482370	Kim SK	2021-01-19	J Shoulder Elbow Surg	A Genome Wide Association Study For Shoulder Impingement and Rotator Cuff Disease.	Shoulder impingement	3,864 European ancestry cases, 208,258 European ancestry controls	NA	5p13.3	LSP1P3	rs144414988-G	0.0011	3E-8		3.53	[2.25-5.55]	Affymetrix [17556449] (imputed)	N
806	chr5	29001523	29001524	rs10940767	31527586	An J	2019-09-16	Nat Commun	Gastroesophageal reflux GWAS identifies risk loci that also associate with subsequent severe esophageal diseases.	Gastroesophageal reflux disease	80,265 European and unknown ancestry cases, 305,011 European and unknown ancestry controls	NA	5p13.3	AK098570, LSP1P3	rs10940767-A	NR	1E-10		1.0365522	[1.02-1.05]	Affymetrix, Illumina [up to 7600000] (imputed)	N
806	chr5	29001523	29001524	rs10940767	31527586	An J	2019-09-16	Nat Commun	Gastroesophageal reflux GWAS identifies risk loci that also associate with subsequent severe esophageal diseases.	Barrett's esophagus  or Esophageal adenocarcinoma	8,998 European and unknown ancestry Barrett's esophagus cases, 4,680 European and unknown ancestry esophageal adenocarcinoma cases, 19,247 European and unknown ancestry controls	NA	5p13.3	AK098570, LSP1P3	rs10940767-?	NR	2E-6		0.0747	[0.044-0.105] unit decrease	Affymetrix [up to 7600000] (imputed)	N
806	chr5	29005984	29005985	rs71618613	30820047	Kunkle BW	2019-02-28	Nat Genet	Genetic meta-analysis of diagnosed Alzheimer's disease identifies new risk loci and implicates A?, tau, immunity and lipid processing.	Alzheimer's disease (late onset)	21,982 European ancestry cases, 41,944 European ancestry controls	up to 13,292 European ancestry cases, up to 17,219 European ancestry controls	5p13.3	SUCLG2P4	rs71618613-A	0.99	3E-7		1.4084507	[1.23-1.59]	Affymetrix, Illumina [11480632] (imputed)	N
806	chr5	29040120	29040121	rs488884	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine without aura	7,107 European ancestry cases, 69,427 European ancestry controls	NA	5p13.3	intergenic	rs488884-?	0.5	1E-6		1.1	[1.06-1.15]	Affymetrix, Illumina [~ 2300000] (imputed)	N
806	chr5	29054619	29054620	rs631844	26220383	Jang HW	2015-06-02	Epilepsy Res	GWAS identifies two susceptibility loci for lamotrigine-induced skin rash in patients with epilepsy.	Epilepsy and lamotrigine-induced maculopapular eruptions	34 Korean ancestry cases, 1,080 Korean ancestry healthy controls	NA	5p13.3	intergenic	rs631844-T	0.05	7E-8		4.9	[NR]	Affymetrix [4893794] (imputed)	N
806	chr5	29090783	29090784	rs173684	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Anti-saccade response	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	5p13.3	LOC101929645	rs173684-A	0.4885	5E-6	(African)			Illumina [4404269] (imputed)	N
806	chr5	29091684	29091685	rs679895	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Anti-saccade error rate in psychotic disorders	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases	NA	5p13.3	LOC101929645	rs679895-?	NR	2E-7	(African)			Illumina [4404269] (imputed)	N
808	chr5	29350680	29350681	rs13179734	32308125	Wolking S	2020-04-20	Pharmacogenomics	Pharmacoresponse in genetic generalized epilepsy: a genome-wide association study.	Response to antiepileptic drugs in genetic generalized epilepsy	608 European ancestry responders, 278 European ancestry non-responders	NA	5p13.3	intergenic	rs13179734-?	NR	9E-6				Affymetrix, Illumina [at least 3287443] (imputed)	N
809	chr5	29368023	29368024	rs16898904	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Dementia and core Alzheimer's disease neuropathologic changes	up to 3,887 cases, up to 1,027 controls	NA	5p13.3	intergenic	rs16898904-T	0.054	8E-6	(Primary)	0.6617	[0.37-0.95] unit increase	Affymetrix, Illumina [NR] (imputed)	N
809	chr5	29371341	29371342	rs79859533	34011352	Schwarm C	2021-05-19	Orphanet J Rare Dis	Identification of two novel bullous pemphigoid- associated alleles, HLA-DQA1*05:05 and -DRB1*07:01, in Germans.	Bullous pemphigoid	438 German cases, 417 German controls	NA	5p13.3	LOC101929660, LOC101929681	rs79859533-?	NR	8E-6		0.857192	[0.48-1.23] unit decrease	Affymetrix [up to 386296] (imputed)	N
809	chr5	29426435	29426436	rs649357	33948810	Gurinovich A	2021-05-04	Geroscience	Effect of longevity genetic variants on the molecular aging rate.	Longevity (100 years and older)	1,320 European ancestry cases, 2,899 European ancestry controls	312 Ashkenazi Jewish ancestry cases, 638 Ashkenazi Jewish ancestry controls	5p13.3	LINC02064	rs649357-C	0.6394	4E-8	(EA)	5.5010357	[NR] unit decrease	Illumina [9039731] (imputed)	N
809	chr5	29434148	29434149	rs148438089	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,963 Sub-Saharan African ancestry females	NA	5p13.3		rs148438089-T	0.978564	3E-6		0.0420711	[0.024-0.06] unit decrease	Illumina [13900000] (imputed)	N
809	chr5	29480741	29480742	rs35028939	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota relative abundance (bacterial taxa)	up to 858 Metropolitan French ancestry individuals	NA	5p13.3	NR	rs35028939-?	NR	6E-9	(Acidaminococcaceae)	0.520748	[0.35-0.69] unit decrease	Illumina [5293637] (imputed)	N
809	chr5	29481143	29481144	rs13182470	32572145	Kawafune K	2020-06-22	J Hum Genet	Strong association between the 12q24 locus and sweet taste preference in the Japanese population revealed by genome-wide meta-analysis.	Sweet taste preference	12,312 Japanese ancestry individuals	NA	5p13.3	CDH9, CDH6	rs13182470-T	0.332	5E-6	(LMM)	0.055	[0.031-0.079] unit decrease	Illumina [5299861] (imputed)	N
809	chr5	29489790	29489791	rs13180077	26420894	Wuttke M	2015-09-28	Nephrol Dial Transplant	Genetic loci associated with renal function measures and chronic kidney disease in children: the Pediatric Investigation for Genetic Factors Linked with Renal Progression Consortium.	Glomerular filtration rate in chronic kidney disease	up to 744 Central European ancestry child cases, up to 397 Turkish ancestry child cases	NA	5p13.3	LSP1P3	rs13180077-G	0.65	6E-6	(Turkish ancestry)	0.14	[0.081-0.199] unit increase	Illumina [~ 8300000] (imputed)	N
810	chr5	29514351	29514352	rs13347339	32572145	Kawafune K	2020-06-22	J Hum Genet	Strong association between the 12q24 locus and sweet taste preference in the Japanese population revealed by genome-wide meta-analysis.	Sweet taste preference	12,312 Japanese ancestry individuals	NA	5p13.3	LOC105374702, LOC105374703	rs13347339-C	0.274	6E-7		0.064	[0.039-0.089] unit decrease	Illumina [5299861] (imputed)	N
810	chr5	29528003	29528004	rs114593742	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Small vessel stroke	333 Indian ancestry cases, 2,154 Indian ancestry controls	NA	5p13.3		rs114593742-?	NR	3E-7		1.2636417	[1.15485603496653-1.38267495211098]	Illumina [7827597] (imputed)	N
810	chr5	29538165	29538166	rs139161960	29346644	Yan Q	2018-01-15	Hum Mol Genet	Genome-wide Analysis of Disease Progression in Age-related Macular Degeneration.	Disease progression in age-related macular degeneration (adjusted for baseline)	1,105 progressed eyes and 3,912 non-progressed eyes from 2,721 European ancestry individuals	NA	5p13.3	LOC101929681, CDH6	rs139161960-G	0.07	8E-7		1.5		Illumina [8974355] (imputed)	N
811	chr5	29635163	29635164	rs17573102	30120429	Schlauch KA	2018-08-17	Int J Obes (Lond)	Single-nucleotide polymorphisms in a cohort of significantly obese women without cardiometabolic diseases.	Obesity without metabolic disease	38 European ancestry cases, 32 European ancestry non-obese controls	NA	5p13.3		rs17573102-?	NR	9E-6		8.061831		Affymetrix [710007]	N
811	chr5	29636302	29636303	rs7705929	33483693	Clements CC	2021-01-22	Mol Psychiatry	Genome-wide association study of patients with a severe major depressive episode treated with electroconvulsive therapy.	Major depressive episode treated with electroconvulsive therapy	2,725 European ancestry cases, 3,290 European ancestry controls	NA	5p13.3	NR	rs7705929-?	NR	2E-7		0.562	[0.35-0.78]	Illumina [NR] (imputed)	N
811	chr5	29735072	29735073	rs6897483	34404834	Sin S	2021-08-17	Sci Rep	A genome-wide association study of quantitative computed tomographic emphysema in Korean populations.	Emphysema in chronic obstructive pulmonary disease	514 Korean ancestry individuals	NA	5p13.3		rs6897483-?	NR	2E-7		0.43	[0.27-0.59] unit increase	NR [599248] (imputed)	N
811	chr5	29735072	29735073	rs6897483	34404834	Sin S	2021-08-17	Sci Rep	A genome-wide association study of quantitative computed tomographic emphysema in Korean populations.	Emphysema	514 Korean ancestry COPD individuals, 34 Korean ancestry non COPD individuals	NA	5p13.3		rs6897483-?	NR	2E-6		0.4	[0.24-0.56] unit increase	NR [599248] (imputed)	N
812	chr5	29849042	29849043	rs9292344	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	L1-L4 bone mineral density x serum urate levels interaction	2,207 men, 2,354 women	NA		AC010374.2	rs9292344-?	NR	6E-6		0.36	[NR] unit decrease	Affymetrix [NR] (imputed)	N
813	chr5	29892869	29892870	rs78458156	29213071	Mendez-Giraldez R	2017-12-06	Sci Rep	GWAS of the electrocardiographic QT interval in Hispanics/Latinos generalizes previously identified loci and identifies population-specific signals.	QT interval	15,997 Hispanic/Latino individuals	NA	5p13.3	LOC729862	rs78458156-T	0.99	1E-6		6.39	[3.78-9] ms increase	Affymetrix, Illumina [up to 17586686] (imputed)	N
814	chr5	30034292	30034293	rs35058211	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	5p13.3		rs35058211-G	0.625	1E-8		0.007	[0.005-0.009] unit decrease	NR [NR] (imputed)	N
814	chr5	30038915	30038916	rs34259390	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	5p13.3	CDH6	rs34259390-T	0.346	1E-12		0.0088	[0.0064-0.0112] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
814	chr5	30041847	30041847	rs760743414	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	5p13.3	LOC105374704	rs760743414-CG	0.633724	3E-8		0.012164	[0.0079-0.0164] unit increase	NR [16516521] (imputed)	N
814	chr5	30053390	30053391	rs10061911	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	5p13.3	CDH6	rs10061911-A	0.6582	2E-9		0.012213127	[0.0082-0.0162] unit decrease	Illumina [9339358] (imputed)	N
814	chr5	30138335	30138336	rs76634309	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5p13.3	NR	rs76634309-G	0.01568	1E-8	(FIS1)	0.03358	NR unit increase	Illumina [1671387] (imputed)	N
815	chr5	30179012	30179013	rs13178362	24755620	Perez-Palma E	2014-04-22	PLoS One	Overrepresentation of glutamate signaling in Alzheimer's disease: network-based pathway enrichment using meta-analysis of genome-wide association studies.	Alzheimer's disease	2,540 European ancestry cases, 2,029 European ancestry controls	NA	5p13.3	intergenic	rs13178362-T		7E-7		1.3333	[NR]	Affymetrix, Illumina [1216213] (imputed)	N
815	chr5	30246290	30246291	rs150945223	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5p13.3	NR	rs150945223-C	0.01045	3E-8	(FXN)	0.005991	NR unit increase	Illumina [1671387] (imputed)	N
815	chr5	30246290	30246291	rs150945223	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5p13.3	NR	rs150945223-C	0.01045	1E-8	(SPRYD4)	0.1832	NR unit increase	Illumina [1671387] (imputed)	N
816	chr5	30405067	30405068	rs12519788	28118524	Saxena R	2017-01-24	Arthritis Rheumatol	A Multinational Arab Genome-Wide Association Study Identifies New Genetic Associations for Rheumatoid Arthritis.	Rheumatoid arthritis (rheumatoid factor and/or anti-cyclic citrullinated peptide seropositive)	357 African admixed and non-African admixed Arab ancestry cases, 352 African admixed and non-African admixed Arab ancestry controls	234 Arab ancestry cases, 225 Arab ancestry controls	5p13.3	CDH6	rs12519788-G	0.79	5E-8		1.82	[1.47-2.26]	Illumina [7000653] (imputed)	N
816	chr5	30405067	30405068	rs12519788	28118524	Saxena R	2017-01-24	Arthritis Rheumatol	A Multinational Arab Genome-Wide Association Study Identifies New Genetic Associations for Rheumatoid Arthritis.	Rheumatoid arthritis	97 African admixed Arab ancestry cases, 410 non-African admixed Arab ancestry cases, 4 Arab ancestry cases, 56 African admixed Arab ancestry controls, 290 non-African admixed Arab ancestry controls, 6 Arab ancestry controls	283 Arab ancestry cases, 221 Arab ancestry controls	5p13.3	CDH6	rs12519788-G	0.79	1E-8		1.79	[1.47-2.19]	Illumina [7000653] (imputed)	N
817	chr5	30425528	30425529	rs541284506	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	5p13.3	NR	rs541284506-?	NR	8E-8	(AA)	17.579199	[11.25-23.91] unit decrease	Affymetrix [at least 600000] (imputed)	N
817	chr5	30425528	30425529	rs541284506	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	5p13.3	NR	rs541284506-?	NR	1E-7		17.652	NR unit increase	Affymetrix [at least 600000] (imputed)	N
818	chr5	30558136	30558137	rs75094680	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	1,505 Ashkenazi Jewish founder cases, 2,553 Ashkenazi Jewish founder controls	NA	5p13.3	NR	rs75094680-A	NR	7E-6		3.5714285	[NR]	Illumina [up to 9792010] (imputed)	N
818	chr5	30661572	30661573	rs9292394	20709820	Kong X	2010-08-13	Am J Respir Crit Care Med	Genome-wide association study identifies BICD1 as a susceptibility gene for emphysema.	Emphysema-related traits	2,383 European ancestry cases	NA	5p13.3	CDH6	rs9292394-T	0.78	2E-6	(quantitative)	1.83	[NR] HU increase	Illumina [499578]	N
820	chr5	30808644	30808645	rs10940921	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	5p13.3	Intergenic	rs10940921-T	0.4192	9E-19	(MTAG)	0.0148	[0.011-0.018] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
820	chr5	30808644	30808645	rs10940921	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	5p13.3		rs10940921-T	0.4194	1E-14		0.0111	[0.0084-0.0138] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
820	chr5	30808644	30808645	rs10940921	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	5p13.3	Intergenic	rs10940921-T	0.4194	5E-19	(MTAG)	0.012	[0.0095-0.0145] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
820	chr5	30808644	30808645	rs10940921	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	5p13.3	NR	rs10940921-?	NR	2E-6		4.737	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
820	chr5	30830596	30830597	rs35733856	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	5p13.3	Intergenic	rs35733856-A	0.5929	6E-13	(MTAG)	0.0131	[0.0096-0.0166] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
820	chr5	30830596	30830597	rs35733856	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	5p13.3	Intergenic	rs35733856-G	0.4071	3E-9		0.0118	[0.0079-0.0157] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
820	chr5	30834105	30834106	rs4406147	31320639	Hillary RF	2019-07-18	Nat Commun	Genome and epigenome wide studies of neurological protein biomarkers in the Lothian Birth Cohort 1936.	Neurological blood protein biomarker levels	750 European ancestry individuals	NA	5p13.3	RPL19P11	rs4406147-G	0.5843	8E-15	(CDH6)	0.41561	[0.31-0.52] unit increase	Illumina [8683751] (imputed)	N
820	chr5	30836078	30836079	rs12652364	24709693	Cobb J	2014-04-08	Pharmacogenomics J	Genome-wide data reveal novel genes for methotrexate response in a large cohort of juvenile idiopathic arthritis cases.	Response to methotrexate in juvenile idiopathic arthritis	694 European ancestry child cases	NA	5p13.3	CDH6	rs12652364-A	NR	6E-7	(PhysVAS)	1.45	[0.88-2.02] unit decrease	Illumina [586062]	N
820	chr5	30839606	30839607	rs1921087	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	5p13.3	Intergenic	rs1921087-A	0.4488	6E-11	(MTAG)	0.0151	[0.011-0.02] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
820	chr5	30840138	30840139	rs1921086	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	5p13.3		rs1921086-G	0.453	3E-14		0.009	[0.007-0.011] unit decrease	NR [NR] (imputed)	N
820	chr5	30842053	30842054	rs12517438	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	5p13.3	intergenic	rs12517438-T	0.457652	3E-9		0.0122919	[0.0082-0.0164] unit increase	NR [16516521] (imputed)	N
820	chr5	30842053	30842054	rs12517438	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	5p13.3		rs12517438-?	NR	2E-13		0.0197	unit decrease	NR [NR]	N
820	chr5	30842053	30842054	rs12517438	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	5p13.3	CDH6	rs12517438-T	0.4591	4E-8		0.011043831	[0.0071-0.015] unit decrease	Affymetrix [11514654] (imputed)	N
820	chr5	30842053	30842054	rs12517438	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	5p13.3	NR	rs12517438-G	0.539243558689398	4E-8		0.0050629782	[0.0033-0.0069] unit increase	NR [NR]	N
820	chr5	30842053	30842054	rs12517438	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	5p13.3	NR	rs12517438-G	0.538	5E-14		0.00815355	[0.006-0.0103] unit increase	NR [9732723] (imputed)	N
820	chr5	30842053	30842054	rs12517438	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	5p13.3	NR	rs12517438-G	0.538	2E-9		0.015354479	[0.01-0.02] unit increase	NR [~ 10000000] (imputed)	N
820	chr5	30842053	30842054	rs12517438	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	5p13.3	NR	rs12517438-G	0.542	3E-10		0.00920525	[0.0063-0.0121] unit decrease	NR [9732723] (imputed)	N
820	chr5	30842053	30842054	rs12517438	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	5p13.3		rs12517438-?	NR	6E-8				NR [~ 8900000] (imputed)	N
820	chr5	30843786	30843787	rs2066928	34450027	Boer CG	2021-08-24	Cell	Deciphering osteoarthritis genetics across 826,690 individuals from 9 populations.	Knee osteoarthritis	61,588 European ancestry cases, 330,161 European ancestry controls, 899 Japanese ancestry cases, 3,396 Japanese ancestry controls	NA	5p13.3		rs2066928-A	0.4825	1E-8		0.95963717	[0.946190136-0.973275337]	Affymetrix, Illumina [NR] (imputed)	N
820	chr5	30843787	30843788	rs2178487	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first birth	542,901 European ancestry individuals	NA	5p13.3	intergenic	rs2178487-A	0.5465	3E-8		0.054	[0.035-0.073] unit decrease	NR [9744772] (imputed)	N
820	chr5	30843787	30843788	rs2178487	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	5p13.3	Intergenic	rs2178487-T	0.4547	7E-14		0.0171	[0.013-0.022] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
820	chr5	30855211	30855212	rs4279348	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	5p13.3		rs4279348-A	0.3835	4E-10	(conditional-joint)	0.009	[0.0063-0.0117] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
820	chr5	30858833	30858834	rs1882206	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	5p13.3	NR	rs1882206-?	NR	1E-12				Affymetrix [NR]	N
820	chr5	30869348	30869349	rs77506079	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	5p13.3	NR	rs77506079-?	NR	4E-6		11.399	NR unit increase	Affymetrix [at least 600000] (imputed)	N
820	chr5	30884914	30884915	rs62357000	31212010	Cabana-Dominguez J	2019-06-15	Prog Neuropsychopharmacol Biol Psychiatry	Genome-wide association meta-analysis of cocaine dependence: Shared genetics with comorbid conditions.	Cocaine dependence	2,085 European ancestry cases, 4,293 European ancestry controls	NA	5p13.3	CDH6	rs62357000-T	NR	9E-6		0.5584	[0.31-0.81] unit increase	Illumina [9290362] (imputed)	N
820	chr5	30888582	30888583	rs13165531	27798624	Eppinga RN	2016-10-31	Nat Genet	Identification of genomic loci associated with resting heart rate and shared genetic predictors with all-cause mortality.	Resting heart rate	127,919 European ancestry individuals, 2,478 Asian ancestry individuals, 1,734 Black individuals, 684 Mixed ancestry individuals, 1,436 individuals	130,795 European ancestry individuals	5p13.3	CDH6	rs13165531-T	0.42	4E-11		0.221	[0.16-0.29] unit decrease	Affymetrix [19941912] (imputed)	N
820	chr5	30899516	30899517	rs6871087	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	5p13.3	NR	rs6871087-?	NR	2E-10				Affymetrix [NR]	N
820	chr5	30899516	30899517	rs6871087	22566498	Turner ST	2012-05-07	Hypertension	Genomic association analysis identifies multiple loci influencing antihypertensive response to an angiotensin II receptor blocker.	Response to angiotensin II receptor blocker therapy	198 European ancestry hypertensive individuals, 193 African American hypertensive individuals	NA	5p13.3	CTD-2127O16.1	rs6871087-G	NR	1E-6	(AA)	1.4	[0.79-2.01] unit increase	Affymetrix [~ 2300000] (imputed)	N
820	chr5	30913502	30913503	rs1732924	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	5p13.3		rs1732924-?	NR	4E-15				NR [~ 8900000] (imputed)	N
821	chr5	31002608	31002609	rs2173682	32653958	Cho HW	2020-07-11	J Bone Miner Metab	Association between non-Caucasian-specific ASCC1 gene polymorphism and osteoporosis and obesity in Korean postmenopausal women.	Osteoporosis	443 Korean ancestry cases, 2,223 Korean ancestry controls	NA	5p13.3	NR	rs2173682-T	NR	2E-6		1.556	[1.296-1.867]	Affymetrix [NR]	N
821	chr5	31020520	31020521	rs6888304	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Aspartate aminotransferase levels	386,570 British ancestry individuals, 10,617 Asian or Asian British individuals, 7,426 Black or Black British individuals, 2,321 Chinese ancestry individuals	NA	5p13.3	CDH6	rs6888304-?	NR	2E-18		0.0024	[0.0018-0.003] unit decrease	Affymetrix [21347608] (imputed)	N
821	chr5	31020520	31020521	rs6888304	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Alanine aminotransferase levels	387,859 British ancestry individuals, 10,635 Asian or Asian British individuals, 7,468 Black or Black British individuals, 2,338 Chinese ancestry individuals	NA	5p13.3	CDH6	rs6888304-?	NR	1E-36		0.0057	[0.0047-0.0067] unit decrease	Affymetrix [21347608] (imputed)	N
821	chr5	31020520	31020521	rs6888304	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	5p13.3	NR	rs6888304-G	NR	2E-108		0.0585	[0.053-0.064] unit decrease	Affymetrix [9000000] (imputed)	N
821	chr5	31020520	31020521	rs6888304	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	5p13.3	NR	rs6888304-G	NR	5E-18		0.0229	[0.018-0.028] unit increase	Affymetrix [9000000] (imputed)	N
821	chr5	31020520	31020521	rs6888304	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	5p13.3	NR	rs6888304-G	NR	2E-15		0.0212	[0.016-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
821	chr5	31020520	31020521	rs6888304	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	5p13.3	NR	rs6888304-G	NR	1E-28		0.0295	[0.024-0.035] unit decrease	Affymetrix [9000000] (imputed)	N
821	chr5	31020520	31020521	rs6888304	22001757	Chambers JC	2011-10-16	Nat Genet	Genome-wide association study identifies loci influencing concentrations of liver enzymes in plasma.	Liver enzyme levels (gamma-glutamyl transferase)	Up to 52,350 European ancestry individuals, up to 8,739 Indian Asian ancestry individuals	NA	5p13.3	CDH6	rs6888304-A	0.74	1E-9		2.7	[2.00-3.50] % increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
821	chr5	31021357	31021358	rs10075805	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	5p13.3		rs10075805-G	NR	1E-110		0.0498	[0.045-0.054] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
821	chr5	31021357	31021358	rs10075805	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	5p13.3		rs10075805-G	NR	3E-16		0.0187	[0.014-0.023] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
821	chr5	31021357	31021358	rs10075805	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	5p13.3		rs10075805-G	NR	1E-27		0.0243	[0.02-0.029] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
821	chr5	31021357	31021358	rs10075805	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	5p13.3	CDH6	rs10075805-A	0.71973	1E-170		0.0156393	[0.015-0.017] unit increase	Affymetrix [13995440] (imputed)	N
821	chr5	31021357	31021358	rs10075805	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	5p13.3	CDH9, CDH6	rs10075805-A	0.72	1E-14		7.74	z-score increase	Affymetrix [4314223] (imputed)	N
821	chr5	31021357	31021358	rs10075805	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	5p13.3	CDH9, CDH6	rs10075805-A	0.72	6E-25		10.3	z-score increase	Affymetrix [4312306] (imputed)	N
821	chr5	31021357	31021358	rs10075805	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Gamma glutamyl transferase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	5p13.3	LOC105374704, CDH6	rs10075805-?		2E-11		0.0371	[0.026-0.048] unit decrease	Illumina [31500000] (imputed)	N
821	chr5	31024852	31024853	rs1392428	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Gamma glutamyl transferase levels	118,309 Japanese ancestry individuals	NA	5p13.3	LOC101929681, CDH6	rs1392428-?	NR	2E-8		0.0345	[0.023-0.046] unit decrease novel	Illumina [6108953] (imputed)	N
821	chr5	31025012	31025013	rs1500175	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	133,471 East Asian ancestry individuals	NA	5p13.3		rs1500175-C	0.12771	3E-10		0.0326854	[0.023-0.043] unit decrease	Illumina [13476165] (imputed)	N
821	chr5	31054209	31054210	rs13168878	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	5p13.3		rs13168878-?	NR	2E-12		0.00671001	[0.0048-0.0086] unit increase	NR [NR]	N
821	chr5	31060383	31060384	rs34988270	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	5p13.3	NR	rs34988270-T	NR	1E-20		0.0455	[0.036-0.055] unit decrease	Affymetrix [9000000] (imputed)	N
821	chr5	31060383	31060384	rs34988270	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	5p13.3	NR	rs34988270-T	NR	2E-10		0.031	[0.021-0.041] unit decrease	Affymetrix [9000000] (imputed)	N
822	chr5	31130237	31130238	rs111283466	32427856	Ahmad S	2020-05-19	Sci Rep	CDH6 and HAGH protein levels in plasma associate with Alzheimer's disease in APOE ?4 carriers.	CDH6 protein levels in plasma	281 individuals	NA	5p13.3	NR	rs111283466-A		2E-9		1.068	[0.72-1.42] unit increase	Illumina [NR] (imputed)	N
822	chr5	31134836	31134837	rs6870556	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	5p13.3	CDH6	rs6870556-G	0.374177	7E-24		0.019249	[0.016-0.023] unit increase	NR [13737936] (imputed)	N
822	chr5	31134836	31134837	rs6870556	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	5p13.3		rs6870556-?	NR	7E-23				NR [~ 8900000] (imputed)	N
822	chr5	31134836	31134837	rs6870556	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	5p13.3		rs6870556-?	NR	2E-19		0.0191099	[0.015-0.023] unit increase	Affymetrix [20259828] (imputed)	N
822	chr5	31134836	31134837	rs6870556	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	5p13.3	CDH6	rs6870556-G	0.374934	2E-9		0.0210745	[0.014-0.028] unit increase	NR [17166351] (imputed)	N
822	chr5	31134836	31134837	rs6870556	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	5p13.3	CDH6	rs6870556-G	0.373416	7E-7	(women)	0.0242264	[0.015-0.034] unit increase	NR [17166351] (imputed)	N
822	chr5	31137144	31137145	rs35519228	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	5p13.3	RP11-152K4.2	rs35519228-C	0.579051	1E-9		0.014503109	[0.0098-0.0192] unit decrease	Affymetrix [93095623] (imputed)	N
822	chr5	31178839	31178840	rs72749603	27997041	Traylor M	2016-12-20	Ann Neurol	Genetic variation at 16q24.2 is associated with small vessel stroke.	Large artery stroke	1,877 European ancestry cases, 12,285 European ancestry controls	1,130 European ancestry cases, 17,970 European ancestry controls	5p13.3		rs72749603-?	NR	3E-6		4.687	z score decrease	Affymetrix, Illumina [NR] (imputed)	N
822	chr5	31179170	31179171	rs6892228	27021288	Brevik EJ	2016-03-29	Am J Med Genet B Neuropsychiatr Genet	Genome-wide analyses of aggressiveness in attention-deficit hyperactivity disorder.	Oppositional defiant disorder dimensions in attention-deficit hyperactivity disorder	750 European ancestry child cases	NA	5p13.3	XR_925892.1	rs6892228-C	NR	2E-6	(Irritable dimension)	0.2236	[0.13-0.32] unit increase	Illumina [1871025] (imputed)	N
822	chr5	31179727	31179728	rs10075707	27021288	Brevik EJ	2016-03-29	Am J Med Genet B Neuropsychiatr Genet	Genome-wide analyses of aggressiveness in attention-deficit hyperactivity disorder.	Oppositional defiant disorder dimensions in attention-deficit hyperactivity disorder	750 European ancestry child cases	NA	5p13.3	XR_925892.1	rs10075707-G	NR	2E-6	(Irritable dimension)	0.2236	[0.13-0.32] unit increase	Illumina [1871025] (imputed)	N
822	chr5	31180790	31180791	rs13184157	27021288	Brevik EJ	2016-03-29	Am J Med Genet B Neuropsychiatr Genet	Genome-wide analyses of aggressiveness in attention-deficit hyperactivity disorder.	Oppositional defiant disorder dimensions in attention-deficit hyperactivity disorder	750 European ancestry child cases	NA	5p13.3	XR_925892.1	rs13184157-A	NR	2E-6	(Irritable dimension)	0.2236	[0.13-0.32] unit increase	Illumina [1871025] (imputed)	N
822	chr5	31182412	31182413	rs6869294	27021288	Brevik EJ	2016-03-29	Am J Med Genet B Neuropsychiatr Genet	Genome-wide analyses of aggressiveness in attention-deficit hyperactivity disorder.	Oppositional defiant disorder dimensions in attention-deficit hyperactivity disorder	750 European ancestry child cases	NA	5p13.3	XR_925892.1	rs6869294-A	NR	2E-6	(Irritable dimension)	0.2236	[0.13-0.32] unit increase	Illumina [1871025] (imputed)	N
823	chr5	31204801	31204802	rs72749636	33824429	Fjukstad KK	2021-04-06	Pharmacogenomics J	Genetic variants associated with cardiometabolic abnormalities during treatment with selective serotonin reuptake inhibitors: a genome-wide association study.	Triglyceride levels x SSRI defined daily dose interaction in schizophrenia or bipolar disorder	1,180 European ancestry individuals	NA	5p13.3	RP11-152K4.2:CDH6	rs72749636-T	NR	4E-10		1.52943	[1.05-2] unit increase	Illumina [NR] (imputed)	N
823	chr5	31259128	31259129	rs7705566	32308125	Wolking S	2020-04-20	Pharmacogenomics	Pharmacoresponse in genetic generalized epilepsy: a genome-wide association study.	Response to lamotrigine and valproic acid in genetic generalized epilepsy	31 European ancestry responders, 73 European ancestry non-responders	NA	5p13.3	CDH6	rs7705566-?	NR	4E-6				Affymetrix, Illumina [at least 3287443] (imputed)	N
823	chr5	31264100	31264101	rs59775462	33075057	Li X	2020-10-19	PLoS Genet	Automated feature extraction from population wearable device data identified novel loci associated with sleep and circadian rhythms.	Sleep (1/3-day periodicity)	90,515 individuals	NA	5p13.3	CDH6	rs59775462-C	NR	9E-9		0.575	[0.38-0.77] unit increase	NR [11024754] (imputed)	N
823	chr5	31317493	31317494	rs2302904	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5p13.3		rs2302904-?	NR	3E-8				NR [~ 8900000] (imputed)	N
823	chr5	31321487	31321488	rs184012381	33824429	Fjukstad KK	2021-04-06	Pharmacogenomics J	Genetic variants associated with cardiometabolic abnormalities during treatment with selective serotonin reuptake inhibitors: a genome-wide association study.	Triglyceride levels x SSRI defined daily dose interaction in schizophrenia or bipolar disorder	1,180 European ancestry individuals	NA	5p13.3	CDH6	rs184012381-T	NR	4E-9		1.54483	[1.04-2.05] unit increase	Illumina [NR] (imputed)	N
824	chr5	31366921	31366922	rs75685666	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5p13.3	NR	rs75685666-A	0.0122	2E-9	(CCDC58)	0.0149	NR unit increase	Illumina [1671387] (imputed)	N
824	chr5	31437039	31437040	rs493760	34620984	Skuladottir AT	2021-10-07	Commun Biol	A genome-wide meta-analysis uncovers six sequence variants conferring risk of vertigo.	Vertigo	48,072 European ancestry cases, 894,541 European ancestry controls	NA	5p13.3		rs493760-C	NR	1E-6		1.04144		Affymetrix, Illumina [62056310] (imputed)	N
825	chr5	31525206	31525207	rs112226333	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	41,389 African ancestry individuals	11,364 African ancestry individuals, 253,288 European ancestry individuals	5p13.3	DROSHA	rs112226333-T	0.037	3E-8	(AA)	0.108	[0.069-0.147] unit increase	Affymetrix, Illumina [17972582] (imputed)	N
825	chr5	31525206	31525207	rs112226333	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	41,389 African ancestry individuals	11,364 African ancestry individuals, 253,288 European ancestry individuals	5p13.3	DROSHA	rs112226333-T		2E-9				Affymetrix, Illumina [17972582] (imputed)	N
825	chr5	31525206	31525207	rs112226333	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	25,369 African ancestry women	8,449 African ancestry women, up to 253,288 European ancestry women	5p13.3	DROSHA	rs112226333-T	0.037	3E-6	(AA)	0.114	[0.067-0.161] unit increase	Affymetrix, Illumina [19885954] (imputed)	N
825	chr5	31525206	31525207	rs112226333	26635082	Soler Artigas M	2015-12-04	Nat Commun	Sixteen new lung function signals identified through 1000 Genomes Project reference panel imputation.	Lung function (FEV1)	38,199 European ancestry adults	54,550 European ancestry adults, 5,062 children	5p13.3	DROSHA	rs112226333-G	NR	3E-6	(adults)	0.029	[0.017-0.041] unit increase	Affymetrix, Illumina [8694268] (imputed)	N
825	chr5	31528626	31528627	rs17409588	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5p13.3		rs17409588-?	NR	5E-18				NR [~ 8900000] (imputed)	N
825	chr5	31541141	31541142	rs17410035	30713548	Schurz H	2019-01-18	Front Genet	A Sex-Stratified Genome-Wide Association Study of Tuberculosis Using a Multi-Ethnic Genotyping Array.	Tuberculosis	242 South African admixed female cases, 168 South African admixed male cases, 223 South African admixed female controls, 182 South African admixed male controls	NA	5p13.3	DROSHA	rs17410035-?	NR	2E-6		2.4752474		Illumina [848325]	N
825	chr5	31570597	31570598	rs10940956	34446064	Cade BE	2021-08-26	Genome Med	Whole-genome association analyses of sleep-disordered breathing phenotypes in the NHLBI TOPMed program.	Obstructive sleep apnea trait (apnea hypopnea index)	10,545 European, African American, Hispanic/Latino or East Asian ancestry male individuals	NA	5p13.3		rs10940956-A	NR	1E-8		1.285	[0.84-1.73] unit increase	Affymetrix, Illumina [22105437] (imputed)	N
825	chr5	31575456	31575457	rs181850653	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Cerebrospinal fluid t-tau levels in Alzheimer's disease dementia	190 European ancestry cases	NA	5p13.3	DROSHA, C5orf22, PDZD2	rs181850653-T	0.03	9E-7		1.59	[0.98-2.2] unit decrease	Illumina [8340470] (imputed)	N
826	chr5	31601916	31601917	rs66659415	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Rubella	12,000 European ancestry cases, 71,597 European ancestry controls	NA	5p13.3	NR	rs66659415-?	NR	7E-6		0.1225	[0.069-0.176] unit increase	Illumina [at least 560000] (imputed)	N
826	chr5	31623145	31623146	rs4867356	29531279	Zhou S	2018-03-12	Sci Rep	Genome-wide association analysis identifies new candidate risk loci for familial intracranial aneurysm in the French-Canadian population.	Intracranial aneurysm	173 French Canadian cases, 1,772 French Canadian controls	2,617 cases, 1,416 controls	5p13.3	Intergenic	rs4867356-T		4E-6		4.608	[NR] (Z score) decrease	Illumina [7614484] (imputed)	N
826	chr5	31626035	31626036	rs72753560	29531279	Zhou S	2018-03-12	Sci Rep	Genome-wide association analysis identifies new candidate risk loci for familial intracranial aneurysm in the French-Canadian population.	Intracranial aneurysm	173 French Canadian cases, 1,772 French Canadian controls	2,617 cases, 1,416 controls	5p13.3	PDZD2	rs72753560-?		3E-6	(French Canadians)	2.29048		Illumina [7614484] (imputed)	N
826	chr5	31656389	31656390	rs4867360	33536081	Hu J	2021-02-03	Hum Genomics	Genetic variants are identified to increase risk of COVID-19 related mortality from UK Biobank data.	Mortality in COVID-19	292 European ancestry cases, 804 European ancestry controls	NA	5p13.3	NR	rs4867360-?	NR	1E-5				NR [18617478] (imputed)	N
826	chr5	31695004	31695005	rs1678921	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	5p13.3	NR	rs1678921-?	NR	9E-6		2.538	NR unit decrease	Affymetrix [at least 600000] (imputed)	N
826	chr5	31695776	31695777	rs372344	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	5p13.3	NR	rs372344-?	NR	5E-6		2.61	NR unit decrease	Affymetrix [at least 600000] (imputed)	N
826	chr5	31696735	31696736	rs439399	30373671	Hayden LP	2018-10-29	Respir Res	Childhood asthma is associated with COPD and known asthma variants in COPDGene: a genome-wide association study.	Self-reported childhood asthma in adult smokers	385 European ancestry cases, 4979 European ancestry controls, 325 African American cases, 2342 African American controls	NA	5p13.3	PDZD2	rs439399-C	0.22	4E-7	(EA)	1.52	NR	Illumina [up to 15374350] (imputed)	N
827	chr5	31766432	31766433	rs2059865	24528284	Ji Y	2014-08-01	Br J Clin Pharmacol	Citalopram and escitalopram plasma drug and metabolite concentrations: genome-wide associations.	Response to serotonin reuptake inhibitors in major depressive disorder (plasma drug and metabolite levels)	300 European ancestry Escitalpram treated individuals, 130 European ancestry Citalopram treated individuals	NA	5p13.3	PDZD2	rs2059865-?	0.235	3E-7	(S-DCT concentration)			Illumina [7537437] (imputed)	N
827	chr5	31804350	31804351	rs17416314	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal cancer	978 Austrian ancestry cases, 4,294 European ancestry controls	NA	5p13.3	Intergenic	rs17416314-?		2E-6		1.6490766	[NR]	Affymetrix [492217] (imputed)	N
827	chr5	31846519	31846520	rs59808887	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Eotaxin levels	8,153 Finnish ancestry individuals	NA	5p13.3	NR	rs59808887-C	NR	3E-6		0.1673	[0.097-0.237] SD units increase	NR [10700000] (imputed)	N
828	chr5	31910626	31910627	rs2089199	31598132	Donati G	2019-06-30	Mind Brain Educ	Genome-Wide Association Study of Latent Cognitive Measures in Adolescence: Genetic Overlap With Intelligence and Education.	Working memory	4,611 European ancestry adolescents	NA	5p13.3	PDZD2	rs2089199-?	NR	9E-6		0.098	[0.059-0.137] unit decrease	Illumina [6319684] (imputed)	N
828	chr5	31913005	31913006	rs58808503	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	5p13.3		rs58808503-A	0.14	2E-19		9.0	z score increase	Affymetrix [9061022] (imputed)	N
828	chr5	31913005	31913006	rs58808503	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	5p13.3		rs58808503-A	0.14	1E-12		7.1	z score increase	Affymetrix [9061022] (imputed)	N
828	chr5	31913005	31913006	rs58808503	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	5p13.3		rs58808503-A	0.14	2E-9		5.97	z score increase	Affymetrix [9061022] (imputed)	N
828	chr5	31913005	31913006	rs58808503	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	5p13.3	NR	rs58808503-A	0.1389	6E-10				NR [9056863] (imputed)	N
828	chr5	31913005	31913006	rs58808503	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	5p13.3	NR	rs58808503-A	0.1389	2E-11				NR [9056863] (imputed)	N
828	chr5	31916370	31916371	rs7709630	29394082	Burkart KM	2018-02-02	Am J Respir Crit Care Med	A Genome-wide Association Study in Hispanics/Latinos Identifies Novel Signals for Lung Function. The Hispanic Community Health Study/Study of Latinos.	Chronic obstructive pulmonary disease	363 Hispanic cases, 5,253 Hispanic controls	European ancestry cases and controls (see Wilk et al 2012)	5p13.3	PDZD2	rs7709630-?	NR	2E-8	(Hispanic)	4.045759	[3.85-4.24]	Illumina [up to 27887661] (imputed)	N
828	chr5	31917241	31917242	rs11957407	24322204	Winham SJ	2013-12-10	Mol Psychiatry	Genome-wide association study of bipolar disorder accounting for effect of body mass index identifies a new risk allele in TCF7L2.	Bipolar disorder (body mass index interaction)	388 European ancestry cases, 1,020 European ancestry controls	NA	5p13.3	NR	rs11957407-?	NR	3E-6				NR [up to 8466825] (imputed)	N
828	chr5	31919116	31919117	rs192526906	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-7 levels	3,409 Finnish ancestry individuals	NA	5p13.3	NR	rs192526906-C		2E-6		0.4289	[0.25-0.6] SD units increase	NR [10700000] (imputed)	N
828	chr5	31920018	31920019	rs2174436	34074324	Wan JY	2021-06-01	Diabetol Metab Syndr	Genome-wide association analysis of metabolic syndrome quantitative traits in the GENNID multiethnic family study.	Weight	281 African American individuals from 73 families, 516 European ancestry individuals from 75 families, 125 Japanese American individuals from 15 families, 598 Mexican American individuals from 96 families	NA	5p13.3	PDZD2	rs2174436-A	0.1	9E-7	(Hispanic/Latino)	0.4	[0.22-0.58] unit decrease	Illumina [up to 13042663] (imputed)	N
828	chr5	31924282	31924283	rs62363763	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		PDZD2	rs62363763-?	NR	2E-11	(male)	2.68647	[NR] unit increase	Affymetrix [NR] (imputed)	N
828	chr5	31927316	31927317	rs7719829	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	5p13.3	PDZD2	rs7719829-A	0.395	4E-6	(Leptin )	0.03	[NR] ng/mL increase	Illumina [899892]	N
828	chr5	31931565	31931566	rs62363766	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	UBA7703 abundance in stool	5,959 Finnish ancestry individuals	NA	5p13.3		rs62363766-G	0.0568163	4E-8		0.06939	[0.045-0.094] unit increase	Illumina [7980478] (imputed)	N
828	chr5	31946526	31946527	rs11746514	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	5p13.3	PDZD2	rs11746514-T	0.3497	8E-6		0.0301	[0.017-0.043] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
828	chr5	31952050	31952051	rs72759609	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (multi-trait analysis)	90,939 European ancestry individuals	NA	5p13.3	PDZD2	rs72759609-T	0.9	2E-21		0.01	NR unit increase	Affymetrix, Illumina [8002429] (imputed)	N
828	chr5	31952050	31952051	rs72759609	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (adjusted for vertical disc diameter)	67,040 British ancestry individuals	NA	5p13.3	PDZD2	rs72759609-T	0.9	1E-14		0.01	[0.0071-0.0129] unit increase	Affymetrix [at least 8002429] (imputed)	N
828	chr5	31952050	31952051	rs72759609	31809533	Han X	2019-09-06	Hum Mol Genet	Genome-wide association analysis of 95 549 individuals identifies novel loci and genes influencing optic disc morphology.	Optic disc size	67,040 British ancestry individuals	28,509 European ancestry individuals	5p13.3	PDZD2	rs72759609-T	0.9	8E-19		0.03	unit increase	Affymetrix [8928767] (imputed)	N
828	chr5	31952050	31952051	rs72759609	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Vertical cup-disc ratio	25,180 European ancestry individuals	NA	5p13.3	PDZD2	rs72759609-C	0.089	7E-12		0.016	[0.012-0.02] unit decrease	Affymetrix, Illumina [11901698] (imputed)	N
828	chr5	31952050	31952051	rs72759609	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Vertical cup-disc ratio	21,768 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	8,168 Asian ancestry individuals	5p13.3	PDZD2	rs72759609-C	NR	7E-9		0.012	[0.0081-0.0159] unit decrease	Affymetrix, Illumina [~ 8000000] (imputed)	N
828	chr5	31952050	31952051	rs72759609	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Vertical cup-disc ratio	21,768 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	8,168 Asian ancestry individuals	5p13.3	PDZD2	rs72759609-C	NR	5E-9	(EA)	0.014	[0.01-0.018] unit decrease	Affymetrix, Illumina [~ 8000000] (imputed)	N
828	chr5	31957283	31957284	rs72759613	32724131	Li QS	2020-07-28	Sci Rep	Genome-wide association study and polygenic risk score analysis of esketamine treatment response.	Response to esketamine in treatment resistant depression	255 European ancestry individuals	NA	5p13.3	NR	rs72759613-?		7E-6		14.3869	[8.16-20.61] unit decrease	NR [NR] (imputed)	N
828	chr5	31972068	31972069	rs10940988	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5p13.3	GOLPH3	rs10940988-?	NR	1E-6	(suberic acid)	0.8979875	[0.54-1.26] unit increase	Affymetrix [at least 2500000] (imputed)	N
829	chr5	31988388	31988389	rs6878827	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	5p13.3	NR	rs6878827-?	NR	2E-11				Affymetrix [NR]	N
829	chr5	32000482	32000483	rs10054504	23184150	Henrion M	2012-11-25	Hum Mol Genet	Common variation at 2q22.3 (ZEB2) influences the risk of renal cancer.	Renal cell carcinoma	2,215 European ancestry cases, 8,566 European ancestry controls	3,739 European ancestry cases, 8,786 European ancestry controls	5p13.3	PDZD2	rs10054504-?	0.11	8E-7		1.37	[1.19-1.58]	Illumina [284377]	N
829	chr5	32003369	32003370	rs201628016	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	5p13.3	PDZD2	rs201628016-G	0.655791	3E-10		0.01481965	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
829	chr5	32008459	32008460	rs7711650	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5p13.3		rs7711650-?	NR	3E-8				NR [~ 8900000] (imputed)	N
829	chr5	32017545	32017546	rs11289719	30787463	Escala-Garcia M	2019-02-21	Br J Cancer	Genome-wide association study of germline variants and breast cancer-specific mortality.	Breast cancer specific mortality in estrogen receptor positive breast cancer	4,116 European ancestry cases, 60,055 European ancestry controls	NA	5p13.3	NR	rs11289719-?	NR	3E-6		1.1424453	[1.08-1.21]	Affymetrix, Illumina [~ 10400000] (imputed)	N
829	chr5	32024803	32024804	rs1978459	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	5p13.3	PDZD2	rs1978459-A	0.544806	1E-9		0.014368569	[0.0098-0.019] unit increase	Affymetrix [93095623] (imputed)	N
829	chr5	32041953	32041959	rs138602842	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	5p13.3	PDZD2	rs138602842-A	0.163209	2E-9		0.01805491	[0.012-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
829	chr5	32067050	32067051	rs116422476	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,931 Sub-Saharan African ancestry males	NA	5p13.3		rs116422476-T	0.986009	9E-6		0.0511224	[0.028-0.074] unit decrease	Illumina [13900000] (imputed)	N
829	chr5	32073565	32073566	rs32793	26708285	Wakil SM	2016-02-01	Atherosclerosis	A genome-wide association study reveals susceptibility loci for myocardial infarction/coronary artery disease in Saudi Arabs.	Myocardial infarction	2,563 Saudi Arab ancestry cases, 1,868 Saudi Arab ancestry controls	866 Saudi Arab ancestry cases, 371 Saudi Arab ancestry controls	5p13.3	PDZD2	rs32793-G	0.28	3E-10		1.25	[NR]	Affymetrix [537798]	N
829	chr5	32093658	32093659	rs157499	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Corpus callosum central volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	5p13.3	PDZD2	rs157499-?		1E-6				Illumina [4322238] (imputed)	N
830	chr5	32130013	32130014	rs114603480	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	5p13.3		rs114603480-G	NR	2E-8		0.0361	[0.024-0.049] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
830	chr5	32160712	32160713	rs10073495	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5p13.3		rs10073495-?	NR	3E-11				NR [~ 8900000] (imputed)	N
830	chr5	32214313	32214314	rs116619972	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	5p13.3		rs116619972-A	NR	2E-8		0.0402	[0.026-0.054] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
830	chr5	32214313	32214314	rs116619972	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	5p13.3		rs116619972-A	0.0268389999999999	8E-12		0.0472008	[0.034-0.061] unit decrease	Affymetrix [93095623] (imputed)	N
830	chr5	32214313	32214314	rs116619972	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5p13.3	NR	rs116619972-A	0.0253865	1E-10				Affymetrix, Illumina [23467995] (imputed)	N
830	chr5	32214313	32214314	rs116619972	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	5p13.3	NR	rs116619972-A	0.026454	7E-12		0.040259	[0.029-0.052] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
831	chr5	32278232	32278233	rs73069924	25897834	Biernacka JM	2015-04-21	Transl Psychiatry	The International SSRI Pharmacogenomics Consortium (ISPC): a genome-wide association study of antidepressant treatment response.	Response to serotonin reuptake inhibitors in major depressive disorder	298 European ancestry cases, 567 Asian ancestry cases, 1529 European and other ancestry cases	NA	5p13.3	MTMR12	rs73069924-?	NR	8E-7	(% Change in score)	0.44	[NR] unit decrease	Illumina [~ 7000000] (imputed)	N
831	chr5	32280845	32280846	rs61219219	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	5p13.3		rs61219219-G	NR	1E-8		0.0128	[0.0085-0.0171] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
833	chr5	32535226	32535227	rs116146139	34941638	Avasthi KK	2021-12-08	Pediatr Rep	Identification of Novel Genomic Variations in Susceptibility to Nonsyndromic Cleft Lip and Palate Patients.	Nonsyndromic cleft lip with or without cleft palate	86 Indian ancestry cases, 10 Indian ancestry controls	NA	5p13.3		rs116146139-?	NR	2E-7				Affymetrix [810906]	N
833	chr5	32538503	32538504	rs617933	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5p13.3	ZFR	rs617933-?	NR	9E-7	(PC 34:1)	0.18440747	[0.11-0.26] unit increase	Affymetrix [at least 2500000] (imputed)	N
833	chr5	32567731	32567732	rs2012709	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	5p13.3		rs2012709-T	NR	6E-8		1.03	[1.02-1.05]	Affymetrix, Illumina [NR] (imputed)	N
833	chr5	32567731	32567732	rs2012709	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	5p13.3	intergenic	rs2012709-T	0.48	1E-8	(EA)	1.02	[1-1.04] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
833	chr5	32567731	32567732	rs2012709	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	46,785 European ancestry cases, 42,892 European ancestry controls	NA	5p13.3	intergenic	rs2012709-T	0.46	2E-6		1.05	[1.03-1.08]	Affymetrix, Illumina [~ 14000000] (imputed)	N
833	chr5	32567731	32567732	rs2012709	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	15,748 European ancestry cases, 18,084 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls	5p13.3	Intergenic	rs2012709-T	0.46	6E-9		1.05	[1.03-1.08]	Affymetrix, Illumina [~ 11600000] (imputed)	N
833	chr5	32581185	32581186	rs12519859	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	5p13.3	NR	rs12519859-A	0.4748	6E-9	(EA)	0.0365	[0.024-0.049] unit increase	Illumina [~ 11800000] (imputed)	N
833	chr5	32616254	32616255	rs922000	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	5p13.3	SUB1	rs922000-T	0.3126	2E-11		0.4784	[0.34-0.62] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
833	chr5	32629418	32629419	rs17441816	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	5p13.3	SUB1	rs17441816-G	0.29	5E-13		0.51	[0.37-0.65] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
834	chr5	32661833	32661834	rs7732831	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5p13.3	SUB1	rs7732831-?	NR	2E-6	(glycerol)	0.23061945	[0.13-0.33] unit decrease	Affymetrix [at least 2500000] (imputed)	N
834	chr5	32672780	32672781	rs2859814	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	5p13.3		rs2859814-?	NR	1E-21				NR [~ 8900000] (imputed)	N
834	chr5	32672780	32672781	rs2859814	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	5p13.3		rs2859814-?	NR	2E-10				NR [~ 8900000] (imputed)	N
834	chr5	32682855	32682856	rs62369473	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	5p13.3	NPR3	rs62369473-A	NR	1E-9		0.0271772	[0.018-0.036] unit increase	Affymetrix [321114] (imputed)	N
834	chr5	32682855	32682856	rs62369473	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	5p13.3	NPR3	rs62369473-A	NR	5E-8		0.0241562	[0.015-0.033] unit increase	Affymetrix [323123] (imputed)	N
834	chr5	32689717	32689718	rs6450922	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	5p13.3	NPR3	rs6450922-C	0.75	1E-10		1.2	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
834	chr5	32689772	32689773	rs7729447	24954895	Simino J	2014-06-19	Am J Hum Genet	Gene-age interactions in blood pressure regulation: a large-scale investigation with the CHARGE, Global BPgen, and ICBP Consortia.	Blood pressure	55,796 European ancestry individuals	43,445 European ancestry individuals, 1,849 Chinese ancestry individuals, 2,502 Malay ancestry individuals, 2,476 Asian Indian ancestry individuals, 1,855 Asian ancestry individuals	5p13.3	NPR3	rs7729447-G		3E-6	(EA, MAP, Age 50-59)	0.46	[0.26-0.66] mmHg increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
834	chr5	32690198	32690199	rs7715779	31879980	German CA	2019-12-26	Genet Epidemiol	Ordered multinomial regression for genetic association analysis of ordinal phenotypes at Biobank scale.	Hypertension	30,822 British ancestry normal blood pressure individuals, 25,242 British ancestry elevated blood pressure individuals, 50,461 British ancestry stage 1 hypertension individuals, 75,286 British ancestry stage 2 hypertension individuals, 3,754 British ancestry hypertension crisis individuals	NA	5p13.3	NPR3	rs7715779-?	NR	1E-18		0.05606038	NR unit increase	Affymetrix [464137]	N
834	chr5	32694941	32694942	rs7731703	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	5p13.3	NPR3	rs7731703-T	0.318	4E-18		0.03	[0.024-0.036] unit decrease	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
834	chr5	32697590	32697591	rs12658928	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Coronary artery disease in hypertension	816 Korean ancestry cases, 15,488 Korean ancestry controls	NA	5p13.3		rs12658928-G	0.05389	8E-6		1.546	[1.278-1.871]	Affymetrix [7975321] (imputed)	N
834	chr5	32709652	32709653	rs3762988	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption interaction (2df test)	63,608 European ancestry drinkers, 10,193 African American or Afro-Caribbean heavy drinkers,  2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,494 European ancestry non-drinkers, 11,224 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,002 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,452 Hispanic drinkers, 43,316 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,945 Asian ancestry non-drinkers, 6,925 Hispanic non-drinkers	5p13.3	NPR3	rs3762988-T	0.39	2E-29	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
834	chr5	32709652	32709653	rs3762988	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption (light vs heavy) interaction (2df test)	12,758 European ancestry heavy drinkers, 1,326 African American or Afro-Caribbean heavy drinkers, 648 Asian ancestry heavy drinkers, 364 Hispanic or Latin American heavy drinkers, 43,947 European ancestry light drinkers, 8,239 African American or Afro-Caribbean light drinkers, 1,141 Asian ancestry light drinkers, 4,448 Hispanic or Latin American light drinkers	42,078 European ancestry heavy drinkers, 217 African American heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic heavy drinkers, 74,706 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	5p13.3	NPR3	rs3762988-T	0.39	6E-13	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
834	chr5	32710485	32710486	rs72740637	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	5p13.3	NPR3	rs72740637-A	NR	3E-12		0.0220542	[0.016-0.028] unit increase	Affymetrix [321016] (imputed)	N
834	chr5	32710485	32710486	rs72740637	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	5p13.3	NR	rs72740637-?	NR	1E-14				Affymetrix [~ 8270000] (imputed)	N
834	chr5	32711632	32711633	rs9716700	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	5p13.3	NPR3	rs9716700-A	0.1901	1E-17		0.0222	[0.017-0.027] unit decrease	Affymetrix [18391927] (imputed)	N
834	chr5	32711632	32711633	rs9716700	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	5p13.3	NR	rs9716700-?	NR	3E-26				Affymetrix [~ 8270000] (imputed)	N
834	chr5	32713107	32713108	rs3828591	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5p13.3	NPR3	rs3828591-G	0.60923	7E-10	(-16 ms)	0.03488	[0.024-0.046] unit increase	Affymetrix [10000000] (imputed)	N
834	chr5	32713107	32713108	rs3828591	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5p13.3	NPR3	rs3828591-G	0.60923	3E-9	(-14 ms)	0.0336333	[0.022-0.045] unit increase	Affymetrix [10000000] (imputed)	N
834	chr5	32713107	32713108	rs3828591	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5p13.3	NPR3	rs3828591-G	0.60923	1E-8	(-12 ms)	0.0323439	[0.021-0.044] unit increase	Affymetrix [10000000] (imputed)	N
834	chr5	32713107	32713108	rs3828591	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption (light vs heavy) interaction (2df test)	12,758 European ancestry heavy drinkers, 1,326 African American or Afro-Caribbean heavy drinkers, 648 Asian ancestry heavy drinkers, 364 Hispanic or Latin American heavy drinkers, 43,947 European ancestry light drinkers, 8,239 African American or Afro-Caribbean light drinkers, 1,141 Asian ancestry light drinkers, 4,448 Hispanic or Latin American light drinkers	42,078 European ancestry heavy drinkers, 217 African American heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic heavy drinkers, 74,706 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	5p13.3	NPR3	rs3828591-C	0.4	3E-17	(AA, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
834	chr5	32713107	32713108	rs3828591	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Pulse pressure x alcohol consumption interaction (2df test)	91,099 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	238,053 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,447 Hispanic ancestry drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic ancestry non-drinkers	5p13.3	NPR3	rs3828591-C	0.4	1E-25	(AA, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
834	chr5	32713107	32713108	rs3828591	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Pulse pressure x alcohol consumption (light vs heavy) interaction (2df test)	56,705 European ancestry heavy and light drinkers, 9,725 African American or Afro-Caribbean heavy and light drinkers, 1,789 Asian ancestry heavy and light drinkers, 4,812 Hispanic or Latin American heavy and light drinkers	42,079 European ancestry heavy drinkers, 217 African American heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic heavy drinkers, 74,756 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	5p13.3	NPR3	rs3828591-C	0.4	9E-13	(AA, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
834	chr5	32713326	32713327	rs3828589	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	5p13.3	NPR3	rs3828589-C	NR	1E-9		0.0192657	[0.013-0.025] unit increase	Affymetrix [321114] (imputed)	N
834	chr5	32713835	32713836	rs3792765	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption (light vs heavy) interaction (2df test)	12,758 European ancestry heavy drinkers, 1,326 African American or Afro-Caribbean heavy drinkers, 648 Asian ancestry heavy drinkers, 364 Hispanic or Latin American heavy drinkers, 43,947 European ancestry light drinkers, 8,239 African American or Afro-Caribbean light drinkers, 1,141 Asian ancestry light drinkers, 4,448 Hispanic or Latin American light drinkers	42,079 European ancestry heavy drinkers, 217 African American or Afro-Caribbean heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic ancestry heavy drinkers, 74,757 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	5p13.3	NPR3	rs3792765-A	0.61	5E-9	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
834	chr5	32714269	32714270	rs1421811	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	5p13.3	NPR3	rs1421811-G	NR	3E-11		0.0209005	[0.015-0.027] unit increase	Affymetrix [323123] (imputed)	N
834	chr5	32714269	32714270	rs1421811	24954895	Simino J	2014-06-19	Am J Hum Genet	Gene-age interactions in blood pressure regulation: a large-scale investigation with the CHARGE, Global BPgen, and ICBP Consortia.	Blood pressure	55,796 European ancestry individuals	43,445 European ancestry individuals, 1,849 Chinese ancestry individuals, 2,502 Malay ancestry individuals, 2,476 Asian Indian ancestry individuals, 1,855 Asian ancestry individuals	5p13.3	NPR3	rs1421811-G		2E-7	(EA, SBP, Age 50-59)	0.69	[0.44-0.94] mmHg decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
834	chr5	32716588	32716589	rs10057069	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	5p13.3		rs10057069-T	0.728742	3E-8		0.0239592	[0.015-0.032] unit decrease	NR [11722792] (imputed)	N
834	chr5	32716588	32716589	rs10057069	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	5p13.3	NPR3	rs10057069-C	NR	1E-14		0.0267683	[0.02-0.034] unit increase	Affymetrix [321114] (imputed)	N
834	chr5	32716588	32716589	rs10057069	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	5p13.3	NPR3	rs10057069-C	NR	8E-12		0.0236459	[0.017-0.03] unit increase	Affymetrix [323123] (imputed)	N
834	chr5	32717227	32717228	rs62369524	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	5p13.3	NPR3	rs62369524-T	NR	8E-9		0.0186914	[0.012-0.025] unit decrease	Affymetrix [323123] (imputed)	N
834	chr5	32717227	32717228	rs62369524	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	5p13.3	NR	rs62369524-?	NR	4E-9	(male)	0.21728	[0.14-0.29] unit decrease	Affymetrix [7794483] (imputed)	N
834	chr5	32717227	32717228	rs62369524	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	5p13.3	NR	rs62369524-?	NR	4E-12		0.1615	[0.12-0.21] unit decrease	Affymetrix [7794483] (imputed)	N
834	chr5	32718043	32718044	rs2194178	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	5p13.3		rs2194178-T	0.321697	8E-13		0.0154103	[0.011-0.02] unit decrease	Illumina [13479295] (imputed)	N
834	chr5	32718043	32718044	rs2194178	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	5p13.3	NPR3	rs2194178-?	NR	4E-12		0.021208981	[0.015-0.027] unit decrease	Illumina [27896057] (imputed)	N
834	chr5	32719810	32719811	rs62369525	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	5p13.3		rs62369525-A	NR	4E-9		0.0109	[0.0074-0.0144] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
834	chr5	32722318	32722319	rs7706886	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	5p13.3	NPR3	rs7706886-A	0.2761	2E-6		0.0346	[0.02-0.049] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
834	chr5	32748636	32748637	rs10061804	22116950	Schuh-Huerta SM	2011-11-24	Hum Reprod	Genetic variants and environmental factors associated with hormonal markers of ovarian reserve in Caucasian and African American women.	Ovarian reserve	232 European ancestry female individuals, 200 African American female individuals	NA	5p13.3	NPR3	rs10061804-?		1E-6	(FSH levels - EA)			Affymetrix [677261]	N
834	chr5	32750982	32750983	rs1173773	34035401	Dube MP	2021-05-25	Sci Rep	Genetics of symptom remission in outpatients with COVID-19.	Symptoms in placebo-treated COVID-19 outpatients at risk of severe disease (time to remission)	851 European ancestry individuals	NA	5p13.3	NPR3	rs1173773-C	0.34	1E-6		1.32	[1.18-1.48]	Illumina [6392715] (imputed)	N
834	chr5	32750982	32750983	rs1173773	34035401	Dube MP	2021-05-25	Sci Rep	Genetics of symptom remission in outpatients with COVID-19.	Symptoms in COVID-19 outpatients at risk of severe disease (time to remission)	1,723 European ancestry individuals	NA	5p13.3		rs1173773-C	NR	5E-8		1.25	[1.15-1.35]	Illumina [6392715] (imputed)	N
834	chr5	32753671	32753672	rs2062708	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	5p13.3	NPR3	rs2062708-C	0.16169999999999995	4E-8	(EA)	0.028	[0.018-0.038] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
834	chr5	32753671	32753672	rs2062708	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	5p13.3	NPR3	rs2062708-C	0.16169999999999995	1E-6	(EA, women)	0.0321	[0.019-0.045] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
834	chr5	32753671	32753672	rs2062708	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	5p13.3	NPR3	rs2062708-C	0.16310000000000002	5E-6	(EA,women)	0.0338	[0.019-0.048] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
834	chr5	32753671	32753672	rs2062708	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	5p13.3	NPR3	rs2062708-C	0.16169999999999995	3E-7	(EA)	0.03	[0.019-0.041] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
834	chr5	32753671	32753672	rs2062708	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	5p13.3	NPR3	rs2062708-?	0.16169999999999995	7E-8	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
834	chr5	32753671	32753672	rs2062708	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	5p13.3	NPR3	rs2062708-?	0.16169999999999995	5E-6	(EA, women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
834	chr5	32754453	32754453	rs147664254	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	5p13.3	NPR3	rs147664254-GT	NR	2E-8		0.0208505	[0.014-0.028] unit increase	Affymetrix [321114] (imputed)	N
834	chr5	32758688	32758688	rs540796226	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	5p13.3	NPR3	rs540796226-GT	NR	3E-9		0.0233271	[0.016-0.031] unit increase	Affymetrix [323123] (imputed)	N
834	chr5	32763117	32763118	rs4421120	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	5p13.3	NPR3	rs4421120-A	NR	1E-9		0.0234359	[0.016-0.031] unit increase	Affymetrix [321114] (imputed)	N
834	chr5	32763845	32763846	rs1173730	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5p13.3		rs1173730-?	NR	2E-58				NR [~ 8900000] (imputed)	N
835	chr5	32768633	32768634	rs3792752	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	5p13.3	NPR3	rs3792752-G	NR	4E-14		0.024455	[0.018-0.031] unit increase	Affymetrix [321114] (imputed)	N
835	chr5	32768633	32768634	rs3792752	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	5p13.3	NR	rs3792752-?	NR	8E-24				Affymetrix [~ 8270000] (imputed)	N
835	chr5	32768633	32768634	rs3792752	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	5p13.3	NPR3	rs3792752-?	NR	7E-10	(Conditioned on rs1173727)		[NR]	Affymetrix, Illumina [2834208] (imputed)	N
835	chr5	32771937	32771938	rs1173736	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	5p13.3	NPR3	rs1173736-G	NR	5E-9		0.0188259	[0.013-0.025] unit increase	Affymetrix [319769] (imputed)	N
835	chr5	32773274	32773275	rs72742734	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	Height	19,965 British ancestry individuals from 6863 families.	NA	5p13.3	NPR3	rs72742734-G	0.0537	4E-8		0.008202956	[0.0053-0.0111] m increase	Illumina [24111857] (imputed)	N
835	chr5	32773313	32773314	rs3792751	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	5p13.3	NPR3	rs3792751-T	NR	2E-10		0.0185199	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
835	chr5	32773313	32773314	rs3792751	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	5p13.3	NPR3	rs3792751-T	NR	3E-11		0.0194769	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
835	chr5	32773313	32773314	rs3792751	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	5p13.3	NPR3	rs3792751-T	NR	5E-10		0.0182832	[0.013-0.024] unit increase	Affymetrix [321114] (imputed)	N
835	chr5	32773313	32773314	rs3792751	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	5p13.3	NR	rs3792751-?	NR	3E-13				Affymetrix [~ 8270000] (imputed)	N
835	chr5	32773313	32773314	rs3792751	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	5p13.3		rs3792751-?	NR	2E-12				NR [~ 8900000] (imputed)	N
835	chr5	32773313	32773314	rs3792751	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	5p13.3	NR	rs3792751-T	0.3642	1E-14		0.0136	[0.01-0.017] unit increase	NR [~ 27400000] (imputed)	N
835	chr5	32773313	32773314	rs3792751	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	5p13.3	NR	rs3792751-T	0.364	2E-6		0.0082	[0.0049-0.0115] unit increase	NR [~ 27400000] (imputed)	N
835	chr5	32774850	32774851	rs778920303	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Height	458,235 European ancestry individuals	NA	5p13.3		rs778920303-?	NR	6E-12		0.507707	[0.37-0.65] unit increase	NR [9800000] (imputed)	N
835	chr5	32777344	32777345	rs34555832	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	5p13.3	NPR3	rs34555832-?	NR	7E-14		0.02351009	[0.017-0.03] unit decrease	Illumina [27896057] (imputed)	N
835	chr5	32784906	32784907	rs146301345	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Height	458,235 European ancestry individuals	NA	5p13.3		rs146301345-?	NR	4E-29		0.176821	[0.15-0.21] unit increase	NR [9800000] (imputed)	N
835	chr5	32786412	32786413	rs142228984	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Height	458,235 European ancestry individuals	NA	5p13.3		rs142228984-?	NR	4E-19		0.178155	[0.14-0.22] unit increase	NR [9800000] (imputed)	N
835	chr5	32786412	32786413	rs142228984	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	5p13.3	NR	rs142228984-?	NR	5E-9				Affymetrix [~ 8270000] (imputed)	N
835	chr5	32787669	32787670	rs113986197	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	5p13.3	NPR3	rs113986197-A	NR	3E-8		0.0515951	[0.033-0.07] unit decrease	Affymetrix [321114] (imputed)	N
835	chr5	32787669	32787670	rs113986197	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	5p13.3	NR	rs113986197-?	NR	8E-16				Affymetrix [~ 8270000] (imputed)	N
835	chr5	32804527	32804528	rs1173766	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	5p13.3	NPR3-C5orf23	rs1173766-T	0.42	5E-8	(Japanese)	0.4131	[0.26-0.56] unit decrease	Illumina [6200000] (imputed)	N
835	chr5	32804527	32804528	rs1173766	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	5p13.3	NPR3, C5orf23	rs1173766-T	0.4238	9E-8	(Japanese)	0.2873	[0.18-0.39] unit decrease	Illumina [6200000] (imputed)	N
835	chr5	32804527	32804528	rs1173766	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	5p13.3	NPR3-C5orf23	rs1173766-T	0.4238	4E-6	(Japanese)	0.2246	[0.13-0.32] unit decrease	Illumina [6200000] (imputed)	N
835	chr5	32804527	32804528	rs1173766	26390057	Kato N	2015-09-21	Nat Genet	Trans-ancestry genome-wide association study identifies 12 genetic loci influencing blood pressure and implicates a role for DNA methylation.	Systolic blood pressure	31,516 East Asian ancestry individuals,  35,352 European ancestry individuals, 33,126 South Asian ancestry individuals	87,205 individuals, 48,268 East Asian ancestry individuals, 68,456 European ancestry individuals and 16,328 South Asian ancestry individuals	5p13.3	NPR3	rs1173766-T	0.3704	2E-7	(East Asians)	0.8485	[0.53-1.17] mmHg decrease	Affymetrix, Illumina, Perlegen [2127883] (imputed)	N
835	chr5	32804527	32804528	rs1173766	21572416	Kato N	2011-05-15	Nat Genet	Meta-analysis of genome-wide association studies identifies common variants associated with blood pressure variation in east Asians.	Blood pressure	19,608 East Asian ancestry individuals	30,765 East Asian ancestry individuals	5p13.3	NPR3	rs1173766-C	0.60	2E-8	(Systolic)	0.63	[0.41-0.85] mm Hg increase	Affymetrix, Illumina [1700000] (imputed)	N
835	chr5	32804527	32804528	rs1173766	21572416	Kato N	2011-05-15	Nat Genet	Meta-analysis of genome-wide association studies identifies common variants associated with blood pressure variation in east Asians.	Blood pressure	19,608 East Asian ancestry individuals	30,765 East Asian ancestry individuals	5p13.3	NPR3	rs1173766-C	0.60	1E-7	(Diastolic)	0.36	[0.22-0.50] mm Hg increase	Affymetrix, Illumina [1700000] (imputed)	N
835	chr5	32807385	32807386	rs113098876	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	5p13.3	NR	rs113098876-?	NR	1E-14				Affymetrix [~ 8270000] (imputed)	N
835	chr5	32815027	32815028	rs1173771	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	5p13.3	NPR3-C5orf23	rs1173771-A	0.42	4E-8	(Japanese)	0.4162	[0.27-0.56] unit decrease	Illumina [6200000] (imputed)	N
835	chr5	32815027	32815028	rs1173771	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	5p13.3	NPR3, C5orf23	rs1173771-A	0.4222	5E-8	(Japanese)	0.2916	[0.19-0.4] unit decrease	Illumina [6200000] (imputed)	N
835	chr5	32815027	32815028	rs1173771	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	5p13.3	NPR3-C5orf23	rs1173771-A	0.4222	2E-6	(Japanese)	0.2294	[0.13-0.32] unit decrease	Illumina [6200000] (imputed)	N
835	chr5	32815027	32815028	rs1173771	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure (cigarette smoking interaction)	80,552 European ancestry individuals, 27,118 African individuals, 13,438 Asian individuals, 8,805 Hispanic individuals	305,513 European ancestry individuals, 7,786 African individuals, 148,932 Asian individuals, 13,533 Hispanic individuals, 4,414 Brazilian individuals	5p13.3	NPR3, C5orf23	rs1173771-?	NR	8E-44				Affymetrix, Illumina [18800000] (imputed)	N
835	chr5	32815027	32815028	rs1173771	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure (cigarette smoking interaction)	80,552 European ancestry individuals, 27,118 African individuals, 13,438 Asian individuals, 8,805 Hispanic individuals	305,513 European ancestry individuals, 7,786 African individuals, 148,932 Asian individuals, 13,533 Hispanic individuals, 4,414 Brazilian individuals	5p13.3	NPR3, C5orf23	rs1173771-?		3E-28				Affymetrix, Illumina [18800000] (imputed)	N
835	chr5	32815027	32815028	rs1173771	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Systolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	5p13.3	NPR3, C5orf23	rs1173771-G	0.595	3E-12	(EA, initial)	0.508	[0.36-0.65] unit increase	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
835	chr5	32815027	32815028	rs1173771	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Pulse pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	5p13.3	NPR3, C5orf23	rs1173771-G	0.595	2E-9	(EA, initial)	0.283	[0.19-0.38] unit increase	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
835	chr5	32815027	32815028	rs1173771	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Diastolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	5p13.3	NPR3, C5orf23	rs1173771-G	0.595	1E-6	(EA, initial)	0.217	[0.13-0.31] unit increase	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
835	chr5	32815027	32815028	rs1173771	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	5p13.3	NPR3	rs1173771-A	0.4064	9E-8		0.0367	[0.023-0.05] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
835	chr5	32815027	32815028	rs1173771	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	5p13.3	NPR3, LOC340113	rs1173771-A		8E-8		0.296	unit decrease	Affymetrix [at least 2696785] (imputed)	N
835	chr5	32815027	32815028	rs1173771	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	5p13.3	NPR3, LOC340113	rs1173771-A		1E-6	(EA)	0.294	unit decrease	Affymetrix [at least 2696785] (imputed)	N
835	chr5	32815027	32815028	rs1173771	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	5p13.3	NPR3, LOC340113	rs1173771-A		2E-28		0.428	unit decrease	Affymetrix [at least 2696785] (imputed)	N
835	chr5	32815027	32815028	rs1173771	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	5p13.3	NPR3, LOC340113	rs1173771-A		1E-21		0.246	unit decrease	Affymetrix [at least 2696785] (imputed)	N
835	chr5	32815027	32815028	rs1173771	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	5p13.3	NPR3, LOC340113	rs1173771-A		8E-16		0.19	unit decrease	Affymetrix [at least 2696785] (imputed)	N
835	chr5	32815027	32815028	rs1173771	26390057	Kato N	2015-09-21	Nat Genet	Trans-ancestry genome-wide association study identifies 12 genetic loci influencing blood pressure and implicates a role for DNA methylation.	Mean arterial pressure	31,516 East Asian ancestry individuals,  35,352 European ancestry individuals, 33,126 South Asian ancestry individuals	87,205 individuals, 48,268 East Asian ancestry individuals, 68,456 European ancestry individuals and 16,328 South Asian ancestry individuals	5p13.3	NPR3, C5orf23	rs1173771-A	0.3943	3E-8		0.3486	[0.23-0.47] mmHg decrease	Affymetrix, Illumina, Perlegen [~ 2100000] (imputed)	N
835	chr5	32815027	32815028	rs1173771	26390057	Kato N	2015-09-21	Nat Genet	Trans-ancestry genome-wide association study identifies 12 genetic loci influencing blood pressure and implicates a role for DNA methylation.	Mean arterial pressure	31,516 East Asian ancestry individuals,  35,352 European ancestry individuals, 33,126 South Asian ancestry individuals	87,205 individuals, 48,268 East Asian ancestry individuals, 68,456 European ancestry individuals and 16,328 South Asian ancestry individuals	5p13.3	NPR3, C5orf23	rs1173771-A	0.3703	3E-7	(East Asians)	0.5853	[0.36-0.81] mmHg decrease	Affymetrix, Illumina, Perlegen [~ 2100000] (imputed)	N
835	chr5	32815027	32815028	rs1173771	26390057	Kato N	2015-09-21	Nat Genet	Trans-ancestry genome-wide association study identifies 12 genetic loci influencing blood pressure and implicates a role for DNA methylation.	Diastolic blood pressure	31,516 East Asian ancestry individuals,  35,352 European ancestry individuals, 33,126 South Asian ancestry individuals	87,205 individuals, 48,268 East Asian ancestry individuals, 68,456 European ancestry individuals, 16,328 South Asian ancestry individuals	5p13.3	NPR3, C5orf23	rs1173771-A	0.3702	3E-6	(East Asians)	0.4608	[0.27-0.65] mmHg decrease	Affymetrix, Illumina, Perlegen [~ 2100000] (imputed)	N
835	chr5	32815027	32815028	rs1173771	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	5p13.3	NPR3	rs1173771-A	0.4047	6E-8	(EA,men)	0.028	[0.018-0.038] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
835	chr5	32815027	32815028	rs1173771	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	5p13.3	NPR3	rs1173771-A	0.4047	6E-13	(EA)	0.0258	[0.019-0.033] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
835	chr5	32815027	32815028	rs1173771	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	5p13.3	NPR3	rs1173771-A	0.4047	1E-7	(EA, women)	0.0242	[0.015-0.033] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
835	chr5	32815027	32815028	rs1173771	21909115	Ehret GB	2011-09-11	Nature	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Systolic blood pressure	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	5p13.3	C5orf23, NPR3	rs1173771-G	0.60	2E-16		0.504	[NR] mmHg increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
835	chr5	32815027	32815028	rs1173771	21909115	Ehret GB	2011-09-11	Nature	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Hypertension	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	5p13.3	C5orf23, NPR3	rs1173771-G	0.60	3E-10		0.062	[NR] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
835	chr5	32815027	32815028	rs1173771	21909115	Ehret GB	2011-09-11	Nature	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Diastolic blood pressure	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	5p13.3	C5orf23, NPR3	rs1173771-G	0.60	9E-12		0.261	[NR] mmHg increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
835	chr5	32815027	32815028	rs1173771	21909110	Wain LV	2011-09-11	Nat Genet	Genome-wide association study identifies six new loci influencing pulse pressure and mean arterial pressure.	Blood pressure	74,064 European ancestry individuals	48,607 European ancestry individuals	5p13.3	C5orf23, NPR3	rs1173771-G	0.53	5E-9	(Pulse Pressure)	0.276	[0.18-0.37] mmHg increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
835	chr5	32815027	32815028	rs1173771	21909110	Wain LV	2011-09-11	Nat Genet	Genome-wide association study identifies six new loci influencing pulse pressure and mean arterial pressure.	Blood pressure	74,064 European ancestry individuals	48,607 European ancestry individuals	5p13.3	C5orf23, NPR3	rs1173771-G	0.53	4E-9	(Mean Arterial Pressure)	0.283	[0.19-0.37] mmHg increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
835	chr5	32819072	32819073	rs9292468	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	5p13.3		rs9292468-C	NR	3E-48		0.0189	[0.016-0.021] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
835	chr5	32819072	32819073	rs9292468	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption interaction (2df test)	63,608 European ancestry drinkers, 10,193 African American or Afro-Caribbean heavy drinkers,  2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,494 European ancestry non-drinkers, 11,224 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,002 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,452 Hispanic drinkers, 43,316 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,945 Asian ancestry non-drinkers, 6,925 Hispanic non-drinkers	5p13.3	NPR3	rs9292468-T	0.4	4E-46	(EA, Hispanic)			Affymetrix, Illumina [up to 39321347] (imputed)	N
835	chr5	32819072	32819073	rs9292468	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption interaction (2df test)	91,110 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	237,996 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,315 European ancestry non-drinkers, 2,761 African ancestry non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	5p13.3	NPR3	rs9292468-T	0.4	2E-27	(Asian, EA, Hispanic)			Affymetrix, Illumina [up to 39321347] (imputed)	N
835	chr5	32819072	32819073	rs9292468	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption interaction (2df test)	63,607 European ancestry drinkers, 10,193 African American or Afro-Caribbean drinkers, 2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,492 European ancestry non-drinkers, 11,223 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,058 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	5p13.3	NPR3	rs9292468-T	0.4	4E-35	(Asian, EA, Hispanic)			Affymetrix, Illumina [up to 39321347] (imputed)	N
835	chr5	32819072	32819073	rs9292468	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	5p13.3	C5orf23	rs9292468-T	0.399	2E-33		0.036	[0.03-0.042] unit increase	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
835	chr5	32819072	32819073	rs9292468	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	5p13.3	C5orf23	rs9292468-T	0.4	2E-16		1.18	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
835	chr5	32820551	32820552	rs2193951	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls, 22,356 East Asian ancestry cases, 156,370 East Asian ancestry controls	NA	5p13.3		rs2193951-G	NR	2E-15		0.0513	[0.039-0.064] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
835	chr5	32828845	32828846	rs7733331	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls, 49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	5p13.3		rs7733331-C	NR	2E-13		0.0427	[0.031-0.054] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
835	chr5	32828845	32828846	rs7733331	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls, 20,367 East Asian ancestry cases, 158,359 East Asian ancestry controls	NA	5p13.3		rs7733331-C	NR	9E-10		0.0411	[0.028-0.054] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
835	chr5	32828845	32828846	rs7733331	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls	NA	5p13.3	AC026703.1	rs7733331-T	0.400308	1E-13		0.060675316	[0.045-0.077] unit decrease	Affymetrix [7288503] (imputed)	N
835	chr5	32828845	32828846	rs7733331	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Pulse pressure x alcohol consumption interaction (2df test)	91,099 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	238,053 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,447 Hispanic ancestry drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic ancestry non-drinkers	5p13.3	NPR3	rs7733331-T	0.4	1E-21	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
835	chr5	32828845	32828846	rs7733331	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	5p13.3	C5orf23	rs7733331-T	0.4017	6E-10	(EA)	0.0213	[0.015-0.028] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
835	chr5	32828845	32828846	rs7733331	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	5p13.3	C5orf23	rs7733331-T	0.4017	1E-11	(EA, men)	0.0328	[0.023-0.042] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
835	chr5	32829578	32829579	rs60240315	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	5p13.3	NPR3, AC026703.1	rs60240315-A	NR	2E-9		0.0209781	[0.014-0.028] unit decrease	Affymetrix [321114] (imputed)	N
835	chr5	32829578	32829579	rs60240315	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	5p13.3	NR	rs60240315-?	NR	4E-14				Affymetrix [~ 8270000] (imputed)	N
835	chr5	32829928	32829929	rs1177765	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	5p13.3	NPR3, AC026703.1	rs1177765-C	NR	4E-8		0.0169878	[0.011-0.023] unit decrease	Affymetrix [321114] (imputed)	N
835	chr5	32829928	32829929	rs1177765	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	5p13.3	NPR3, AC026703.1	rs1177765-C	NR	4E-15		0.0221184	[0.017-0.028] unit decrease	Affymetrix [321016] (imputed)	N
835	chr5	32829928	32829929	rs1177765	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	5p13.3	NR	rs1177765-T	0.4052	5E-13	(East Asian)	0.4694	[0.34-0.6] unit decrease	Illumina [6200000] (imputed)	N
835	chr5	32829928	32829929	rs1177765	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	5p13.3	NPR3, C5orf23	rs1177765-T	0.4052	2E-13	(East Asian)	0.3368	[0.25-0.43] unit decrease	Illumina [6200000] (imputed)	N
835	chr5	32829928	32829929	rs1177765	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	5p13.3	NPR3-C5orf23	rs1177765-T	0.4053	3E-11	(East Asian)	0.2715	[0.19-0.35] unit decrease	Illumina [6200000] (imputed)	N
835	chr5	32829928	32829929	rs1177765	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Systolic blood pressure	136,597 Japanese ancestry individuals	NA	5p13.3	NPR3, LOC340113	rs1177765-?	NR	5E-9		0.02293	[0.015-0.031] unit increase	Illumina [6108953] (imputed)	N
835	chr5	32829928	32829929	rs1177765	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean arterial pressure	136,482 Japanese ancestry individuals	NA	5p13.3	NPR3, LOC340113	rs1177765-?	NR	5E-9		0.02317	[0.015-0.031] unit increase novel	Illumina [6108953] (imputed)	N
835	chr5	32829974	32829975	rs1177764	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	5p13.3		rs1177764-G	NR	1E-56		0.0301	[0.026-0.034] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
835	chr5	32829974	32829975	rs1177764	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	145,505 East Asian ancestry individuals	NA	5p13.3		rs1177764-G	0.59951	3E-11		0.022472	[0.016-0.029] unit increase	Illumina [13477770] (imputed)	N
835	chr5	32829974	32829975	rs1177764	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	5p13.3		rs1177764-G	NR	1E-35		0.0229	[0.019-0.026] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
835	chr5	32829974	32829975	rs1177764	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	5p13.3		rs1177764-G	NR	7E-50		0.0287	[0.025-0.032] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
835	chr5	32829974	32829975	rs1177764	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	5p13.3	NPR3, AC026703.1	rs1177764-C	NR	8E-14		0.0234342	[0.017-0.03] unit increase	Affymetrix [321114] (imputed)	N
835	chr5	32829974	32829975	rs1177764	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	5p13.3	NPR3, AC026703.1	rs1177764-C	NR	5E-20		0.028566	[0.022-0.035] unit increase	Affymetrix [323123] (imputed)	N
835	chr5	32829974	32829975	rs1177764	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	5p13.3		rs1177764-?	NR	5E-8				NR [~ 8900000] (imputed)	N
835	chr5	32830520	32830521	rs1173727	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta minimum area	35,110 individuals	NA	5p13.3		rs1173727-T	0.400555	7E-11		0.0465338	[0.033-0.06] decrease	Affymetrix [NR]	N
835	chr5	32830520	32830521	rs1173727	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta maximum area	31,908 individuals	NA	5p13.3		rs1173727-T	0.400213	3E-10		0.048735	[0.034-0.064] decrease	Affymetrix [NR]	N
835	chr5	32830520	32830521	rs1173727	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	5p13.3	NPR3, AC026703.1	rs1173727-T	NR	4E-21		0.0270766	[0.021-0.033] unit increase	Affymetrix [321016] (imputed)	N
835	chr5	32830520	32830521	rs1173727	31879980	German CA	2019-12-26	Genet Epidemiol	Ordered multinomial regression for genetic association analysis of ordinal phenotypes at Biobank scale.	Hypertension	30,822 British ancestry normal blood pressure individuals, 25,242 British ancestry elevated blood pressure individuals, 50,461 British ancestry stage 1 hypertension individuals, 75,286 British ancestry stage 2 hypertension individuals, 3,754 British ancestry hypertension crisis individuals	NA	5p13.3	NR	rs1173727-?	NR	4E-24		0.0632106	NR unit increase	Affymetrix [464137]	N
835	chr5	32830520	32830521	rs1173727	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	5p13.3	NR	rs1173727-?	NR	7E-8		0.0329767	[0.021-0.045] unit decrease	Illumina [34656550] (imputed)	N
835	chr5	32830520	32830521	rs1173727	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	5p13.3		rs1173727-?	NR	9E-84				NR [~ 8900000] (imputed)	N
835	chr5	32830520	32830521	rs1173727	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Mean arterial pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	NA	5p13.3	intergenic	rs1173727-A	0.375002741173686	5E-12		0.325561	[0.23-0.42] unit decrease	Illumina [247039]	N
835	chr5	32830520	32830521	rs1173727	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Systolic blood pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	5p13.3	NPR3, C5orf23	rs1173727-T	0.4102	7E-23		0.0327	unit decrease	Illumina [242296]	N
835	chr5	32830520	32830521	rs1173727	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	5p13.3	NPR3	rs1173727-T	0.4	2E-21		0.034	[NR] unit increase	Affymetrix, Illumina [2834208] (imputed)	N
835	chr5	32831669	32831670	rs13154066	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	5p13.3		rs13154066-C	NR	9E-20		0.0451	[0.035-0.055] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
835	chr5	32831669	32831670	rs13154066	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	5p13.3		rs13154066-C	NR	2E-33		0.0241	[0.02-0.028] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
835	chr5	32831669	32831670	rs13154066	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls	NA	5p13.3	AC026703.1	rs13154066-T	0.40523	4E-10		0.052533343	[0.036-0.069] unit decrease	Affymetrix [7288503] (imputed)	N
835	chr5	32831669	32831670	rs13154066	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	5p13.3	AC026703.1	rs13154066-T	0.403118	1E-21		0.058719274	[0.047-0.071] unit decrease	Affymetrix [7288503] (imputed)	N
835	chr5	32831669	32831670	rs13154066	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	5p13.3	NR	rs13154066-T		9E-7	(EA)	0.3	unit decrease	Affymetrix [at least 2696785] (imputed)	N
835	chr5	32831669	32831670	rs13154066	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	5p13.3	NR	rs13154066-T		3E-8		0.307	unit decrease	Affymetrix [at least 2696785] (imputed)	N
835	chr5	32831669	32831670	rs13154066	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	5p13.3	NR	rs13154066-T		2E-29		0.436	unit decrease	Affymetrix [at least 2696785] (imputed)	N
835	chr5	32831669	32831670	rs13154066	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	5p13.3	NR	rs13154066-T		7E-22		0.248	unit decrease	Affymetrix [at least 2696785] (imputed)	N
835	chr5	32831669	32831670	rs13154066	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	5p13.3	NR	rs13154066-T		1E-16		0.196	unit decrease	Affymetrix [at least 2696785] (imputed)	N
835	chr5	32831938	32831939	rs12656497	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	5p13.3	intergenic	rs12656497-T	0.4037	1E-40		0.0256	[0.022-0.029] unit increase	Affymetrix [18391927] (imputed)	N
835	chr5	32831938	32831939	rs12656497	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls	NA	5p13.3	AC026703.1	rs12656497-T	0.404841	7E-20		0.07303389	[0.057-0.089] unit decrease	Affymetrix [7288503] (imputed)	N
835	chr5	32831938	32831939	rs12656497	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	5p13.3	NPR3	rs12656497-T	0.4087	1E-38		0.43	[0.37-0.49] mmHg decrease	Affymetrix [NR] (imputed)	N
835	chr5	32831938	32831939	rs12656497	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	5p13.3	NPR3	rs12656497-T	0.4085	6E-20		0.2268	[0.18-0.28] mmHg decrease	Affymetrix [NR] (imputed)	N
835	chr5	32831938	32831939	rs12656497	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Systolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	5p13.3	NPR3, C5orf23	rs12656497-T	0.403	4E-16		0.487	[0.37-0.6] mm Hg decrease	Affymetrix, Illumina, Perlegen [128272]	N
835	chr5	32831938	32831939	rs12656497	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Diastolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	5p13.3	NPR3, C5orf23	rs12656497-T	0.403	5E-10		0.228	[0.16-0.3] mm Hg decrease	Affymetrix, Illumina, Perlegen [128272]	N
835	chr5	32832473	32832474	rs10059884	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	145,502 East Asian ancestry individuals	NA	5p13.3		rs10059884-A	0.59879	2E-10		0.0221631	[0.015-0.029] unit increase	Illumina [13477767] (imputed)	N
835	chr5	32832473	32832474	rs10059884	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	5p13.3	NR	rs10059884-?	NR	5E-16				Affymetrix [~ 8270000] (imputed)	N
835	chr5	32832473	32832474	rs10059884	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5p13.3		rs10059884-?	NR	2E-118				NR [~ 8900000] (imputed)	N
835	chr5	32832473	32832474	rs10059884	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	5p13.3		rs10059884-?	NR	6E-39				NR [~ 8900000] (imputed)	N
835	chr5	32832473	32832474	rs10059884	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption (light vs heavy) interaction (2df test)	56,705 European ancestry heavy and light drinkers, 9,725 African American or Afro-Caribbean heavy and light drinkers, 1,789 Asian ancestry heavy and light drinkers, 4,812 Hispanic or Latin American heavy and light drinkers	42,077 European ancestry heavy drinkers, 217 African American heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic ancestry heavy drinkers, 74,701 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	5p13.3	NPR3	rs10059884-A	0.59	7E-17	(Asian, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
835	chr5	32832473	32832474	rs10059884	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption (light vs heavy) interaction (2df test)	12,758 European ancestry heavy drinkers, 1,326 African American or Afro-Caribbean heavy drinkers, 648 Asian ancestry heavy drinkers, 364 Hispanic or Latin American heavy drinkers, 43,947 European ancestry light drinkers, 8,239 African American or Afro-Caribbean light drinkers, 1,141 Asian ancestry light drinkers, 4,448 Hispanic or Latin American light drinkers	42,079 European ancestry heavy drinkers, 217 African American or Afro-Caribbean heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic ancestry heavy drinkers, 74,757 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	5p13.3	NPR3	rs10059884-A	0.59	3E-13	(Asian, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
835	chr5	32837646	32837647	rs11950160	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	5p13.3	NPR3, AC026703.1	rs11950160-C	NR	3E-8		0.0230066	[0.015-0.031] unit increase	Affymetrix [321016] (imputed)	N
835	chr5	32841146	32841147	rs112333447	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	5p13.3	CTD-2218G20.1	rs112333447-A	NR	4E-8		0.0253589	[0.016-0.034] unit decrease	Affymetrix [323123] (imputed)	N
835	chr5	32841933	32841934	rs1818116	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	5p13.3	CTD-2218G20.1	rs1818116-G	NR	2E-8		0.0179081	[0.012-0.024] unit decrease	Affymetrix [321114] (imputed)	N
835	chr5	32841933	32841934	rs1818116	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	5p13.3	CTD-2218G20.1	rs1818116-G	NR	4E-9		0.018772	[0.013-0.025] unit decrease	Affymetrix [323123] (imputed)	N
835	chr5	32851258	32851259	rs516451	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	5p13.3	CTD-2218G20.1	rs516451-T	NR	5E-12		0.0200844	[0.014-0.026] unit increase	Affymetrix [321016] (imputed)	N
835	chr5	32853172	32853173	rs62368123	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	5p13.3	NR	rs62368123-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
835	chr5	32854846	32854846	rs72465120	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	5p13.3	CTD-2218G20.1	rs72465120-GGTGT	NR	8E-12		0.0219617	[0.016-0.028] unit increase	Affymetrix [323123] (imputed)	N
835	chr5	32879162	32879163	rs62368126	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	5p13.3	NR	rs62368126-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
835	chr5	32885781	32885782	rs9292471	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	5p13.3	CTD-2218G20.1	rs9292471-A	NR	5E-9		0.0178329	[0.012-0.024] unit increase	Affymetrix [321016] (imputed)	N
835	chr5	32888817	32888818	rs10472828	19570815	Estrada K	2009-07-01	Hum Mol Genet	A genome-wide association study of northwestern Europeans involves the C-type natriuretic peptide signaling pathway in the etiology of human height variation.	Height	10,074 European ancestry individuals	6,912 European ancestry individuals	5p13.3	C5orf23, NPR3	rs10472828-C	0.56	3E-7		0.22	[0.04-0.40] cm increase	Affymetrix, Illumina, Perlegen [2228850] (imputed)	N
835	chr5	32888817	32888818	rs10472828	19343178	Soranzo N	2009-04-03	PLoS Genet	Meta-analysis of genome-wide scans for human adult stature identifies novel Loci and associations with measures of skeletal frame size.	Height	12,611 European ancestry individuals	7,187 European ancestry individuals	5p13.3	NPR3	rs10472828-?	0.26	3E-7		0.06	[0.04-0.08] s.d. decrease	Illumina [229216]	N
835	chr5	32889129	32889130	rs10472829	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	5p13.3	CTD-2218G20.1	rs10472829-G	NR	4E-9		0.0165899	[0.011-0.022] unit decrease	Affymetrix [321016] (imputed)	N
836	chr5	32900967	32900968	rs7722703	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	5p13.3	CTD-2218G20.1	rs7722703-G	NR	2E-10		0.0181333	[0.013-0.024] unit increase	Affymetrix [321016] (imputed)	N
836	chr5	32909564	32909565	rs144067939	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5p13.3		rs144067939-?	NR	2E-17				NR [~ 8900000] (imputed)	N
836	chr5	32933641	32933641	rs60683709	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	5p13.3	CTD-2066L21.3	rs60683709-C	NR	3E-8		0.0174361	[0.011-0.024] unit increase	Affymetrix [321016] (imputed)	N
836	chr5	32955092	32955093	rs114601412	32180562	Kulyte A	2020-01-25	Mol Metab	Genome-wide association study of adipocyte lipolysis in the GENetics of adipocyte lipolysis (GENiAL) cohort.	Stimulated adipocyte lipolysis	874 European ancestry individuals	NA	5p13.3	NR	rs114601412-C	0.950526	7E-7		0.148	[0.089-0.207] unit decrease	NR [9260588] (imputed)	N
836	chr5	32955092	32955093	rs114601412	32180562	Kulyte A	2020-01-25	Mol Metab	Genome-wide association study of adipocyte lipolysis in the GENetics of adipocyte lipolysis (GENiAL) cohort.	Spontaneous adipocyte lipolysis	856 European ancestry individuals	NA	5p13.3	NR	rs114601412-C	0.950526	8E-6		0.176	[0.1-0.252] unit increase	NR [9260588] (imputed)	N
836	chr5	32989758	32989759	rs13170607	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	5p13.3	CTD-2066L21.3	rs13170607-A	NR	5E-11		0.0187804	[0.013-0.024] unit decrease	Affymetrix [321114] (imputed)	N
836	chr5	32989758	32989759	rs13170607	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	5p13.3	CTD-2066L21.3	rs13170607-A	NR	6E-10		0.0175945	[0.012-0.023] unit decrease	Affymetrix [321016] (imputed)	N
836	chr5	32992832	32992833	rs35189117	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	5p13.3	CTD-2066L21.3	rs35189117-T	NR	2E-8		0.0167622	[0.011-0.023] unit decrease	Affymetrix [321114] (imputed)	N
836	chr5	32995602	32995603	rs1533015	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	5p13.3	CTD-2066L21.3	rs1533015-A	NR	1E-10		0.0184801	[0.013-0.024] unit decrease	Affymetrix [321114] (imputed)	N
836	chr5	32995602	32995603	rs1533015	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	5p13.3	NR	rs1533015-?	NR	2E-17				Affymetrix [~ 8270000] (imputed)	N
836	chr5	33005439	33005440	rs6874776	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	5p13.3	CTD-2066L21.3	rs6874776-A	NR	2E-11		0.0192654	[0.014-0.025] unit increase	Affymetrix [321114] (imputed)	N
836	chr5	33019763	33019764	rs4346780	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	5p13.3	CTD-2066L21.3, CTD-2066L21.1	rs4346780-T	NR	3E-13		0.0205337	[0.015-0.026] unit increase	Affymetrix [321016] (imputed)	N
836	chr5	33021141	33021141	rs5867168	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	5p13.3	CTD-2066L21.3, CTD-2066L21.1	rs5867168-T	NR	4E-8		0.0164954	[0.011-0.022] unit decrease	Affymetrix [321016] (imputed)	N
837	chr5	33040811	33040812	rs1816237	34177598	Wolking S	2021-06-09	Front Pharmacol	Role of Common Genetic Variants for Drug-Resistance to Specific Anti-Seizure Medications.	Response to oxcarbazepine in focal epilepsy	98 European ancestry cases, 296 European ancestry controls	NA			rs1816237-?	NR	1E-6				Illumina [NR] (imputed)	N
837	chr5	33083388	33083389	rs112434206	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	5p13.3	NR	rs112434206-?	NR	4E-7	(AA)	14.292152	[8.85-19.73] unit decrease	Affymetrix [at least 600000] (imputed)	N
837	chr5	33083388	33083389	rs112434206	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	5p13.3	NR	rs112434206-?	NR	3E-7		14.598	NR unit increase	Affymetrix [at least 600000] (imputed)	N
837	chr5	33155666	33155667	rs116349818	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	5p13.3	NR	rs116349818-?	NR	2E-11				Affymetrix [~ 8270000] (imputed)	N
837	chr5	33156968	33156969	rs7735319	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Systolic blood pressure	140,882 European ancestry individuals	190,318 European ancestry individuals	5p13.3	NPR3, C5orf23	rs7735319-T	0.368220568	2E-6		0.2259	[0.13-0.32] unit increase	Affymetrix [~ 9800000] (imputed)	N
838	chr5	33163777	33163778	rs10037743	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5p13.3		rs10037743-?	NR	3E-13				NR [~ 8900000] (imputed)	N
838	chr5	33169524	33169525	rs10805578	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5p13.3	ADAMTS12	rs10805578-?	NR	8E-6	(PC 34:3)	0.15238476	[0.085-0.219] unit increase	Affymetrix [at least 2500000] (imputed)	N
838	chr5	33182069	33182070	rs6891302	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	5p13.3	CTD-2066L21.3	rs6891302-T	0.4517	7E-6		0.0287	[0.016-0.041] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
838	chr5	33194750	33194751	rs10941043	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	5p13.3	NR	rs10941043-?	NR	2E-12				Affymetrix [~ 8270000] (imputed)	N
838	chr5	33204459	33204460	rs10069554	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Hypertension	22,566 Japanese ancestry cases, 28,226 Japanese ancestry controls	8,809 East Asian ancestry cases, 13,663 East Asian ancestry controls, 105,253 European ancestry individuals	5p13.3	NR	rs10069554-T	0.5951	2E-8	(East Asian)	0.0666	[0.043-0.09] unit decrease	Illumina [6200000] (imputed)	N
838	chr5	33206381	33206382	rs59851826	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	5p13.3		rs59851826-?	NR	4E-15				NR [~ 8900000] (imputed)	N
838	chr5	33230033	33230034	rs11745439	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	5p13.3	NR	rs11745439-?	NR	2E-6		0.02764402	[0.016-0.039] unit increase	Illumina [34656550] (imputed)	N
838	chr5	33235488	33235489	rs149709881	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5p13.3	NR	rs149709881-A	0.01742	2E-9	(HIST1H1C)	0.02472	NR unit increase	Illumina [1671387] (imputed)	N
838	chr5	33241654	33241655	rs11744391	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	5p13.3	CTD-2066L21.3, RP11-113I22.1	rs11744391-A	0.391969	3E-9		0.013513145	[0.009-0.018] unit decrease	Affymetrix [93095623] (imputed)	N
838	chr5	33253584	33253585	rs2916184	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	5p13.3	CTD-2066L21.3, RP11-113I22.1	rs2916184-A	NR	3E-10		0.0341564	[0.024-0.045] unit decrease	Affymetrix [321114] (imputed)	N
838	chr5	33253584	33253585	rs2916184	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	5p13.3	NR	rs2916184-?	NR	5E-20				Affymetrix [~ 8270000] (imputed)	N
838	chr5	33260876	33260877	rs114777548	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Major depressive disorder x sex interaction	15,970 European ancestry cases, 24,984 European ancestry controls	NA	5p13.3	LINC02160, TARS	rs114777548-T	0.0194	6E-6		0.4242	[0.24-0.61] unit decrease	NR [NR] (imputed)	N
838	chr5	33272842	33272843	rs188563557	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	5p13.3	CTD-2066L21.3	rs188563557-C	NR	3E-8		0.0466314	[0.03-0.063] unit decrease	Affymetrix [321114] (imputed)	N
838	chr5	33279758	33279759	rs112958363	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	5p13.3	LOC340113, TARS	rs112958363-?	NR	2E-9		0.01740023	[0.012-0.023] unit increase	Illumina [27896057] (imputed)	N
839	chr5	33301320	33301321	rs155587	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	5p13.3	CTD-2066L21.3	rs155587-T	0.0975	1E-7		0.0573	[0.036-0.079] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
839	chr5	33325862	33325863	rs6414859	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5p13.3		rs6414859-?	NR	5E-52				NR [~ 8900000] (imputed)	N
839	chr5	33334311	33334312	rs91731	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	5p13.3		rs91731-?	NR	3E-15				NR [~ 8900000] (imputed)	N
839	chr5	33334311	33334312	rs91731	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FVC)	48,943 European ancestry individuals.	57,176 European ancestry individuals, 38,199 individuals.	5p13.3	LOC340113, TARS	rs91731-A	0.9053	4E-13		0.049	[0.035-0.063] unit decrease	Affymetrix [27624732] (imputed)	N
839	chr5	33352737	33352738	rs268717	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	5p13.3	TARS	rs268717-T	0.9074	3E-17		0.034	[0.026-0.042] unit decrease	Affymetrix [19819130] (imputed)	N
839	chr5	33352737	33352738	rs268717	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	5p13.3	TARS	rs268717-T	0.9074	2E-14		0.0307	[0.023-0.039] unit decrease	Affymetrix [19819130] (imputed)	N
839	chr5	33366825	33366826	rs7718953	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	5p13.3	intergenic	rs7718953-A	0.7352	4E-15		0.0167	[0.013-0.021] unit increase	Affymetrix [18391927] (imputed)	N
839	chr5	33381580	33381581	rs10071837	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	41,389 African ancestry individuals	11,364 African ancestry individuals, 253,288 European ancestry individuals	5p13.3	TARS	rs10071837-C	0.575	1E-9	(AA)	0.041	[0.027-0.055] unit increase	Affymetrix, Illumina [17972582] (imputed)	N
839	chr5	33381580	33381581	rs10071837	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	41,389 African ancestry individuals	11,364 African ancestry individuals, 253,288 European ancestry individuals	5p13.3	TARS	rs10071837-C		8E-17				Affymetrix, Illumina [17972582] (imputed)	N
839	chr5	33381580	33381581	rs10071837	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	16,021 African ancestry men	2,915 African ancestry men, up to 253,288 European ancestry men	5p13.3	TARS	rs10071837-C	0.572	1E-6	(AA)	0.052	[0.03-0.074] unit increase	Affymetrix, Illumina [16055004] (imputed)	N
839	chr5	33411768	33411769	rs74774746	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	5p13.3	TARS	rs74774746-C	0.2612	2E-9		0.1705	[0.11-0.23] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
840	chr5	33467744	33467745	rs149814333	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Pancreatic cancer	768 White British ancestry cases, 264,559 White British ancestry controls	NA	5p13.3		rs149814333-?	NR	3E-7		5.73234	[5.07-6.4]	NR [663102]	N
840	chr5	33470850	33470851	rs55685444	30217971	Ho KWD	2018-09-14	Transl Psychiatry	Genome-wide association study of seasonal affective disorder.	Seasonality and depression	1,380 European ancestry cases, 2,937 European ancestry controls	NA	5p13.3	TARS, ADAMTS12	rs55685444-C		2E-6		0.278	[0.16-0.39] unit decrease	Affymetrix, Illumina [8153767] (imputed)	N
840	chr5	33471002	33471010	rs139816984	30807572	Gong J	2019-02-26	PLoS Genet	Genetic association and transcriptome integration identify contributing genes and tissues at cystic fibrosis modifier loci.	Meconium ileus in cystic fibrosis	1,115 European ancestry cases, 5,655 European ancestry controls	NA	5p13.3	TARS	rs139816984-AAAAAAAAT	NR	3E-7		1.35	NR	Illumina [8763019] (imputed)	N
840	chr5	33530555	33530556	rs256602	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	5p13.3	ADAMTS12	rs256602-?	NR	2E-7	(Hispanic/Latino)	0.04541895	[0.028-0.062] unit decrease	Illumina [34656550] (imputed)	N
840	chr5	33530555	33530556	rs256602	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	5p13.3	ADAMTS12	rs256602-?	NR	1E-10		0.04	[0.028-0.052] unit decrease	Illumina [34656550] (imputed)	N
841	chr5	33636593	33636594	rs6868223	20400778	Morrison AC	2010-04-17	Circ Cardiovasc Genet	Genomic variation associated with mortality among adults of European and African ancestry with heart failure: the cohorts for heart and aging research in genomic epidemiology consortium.	Mortality in heart failure	1,645 European ancestry cases, 881 European ancestry controls, 281 African ancestry cases, 185 African ancestry controls	NA	5p13.3	ADAMTS12	rs6868223-A	0.338	2E-6	(AA)	1.58	[0.98-2.56]	Affymetrix [up to 2366858] (imputed)	N
842	chr5	33686667	33686668	rs115169076	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Aspartate aminotransferase levels in excessive alcohol consumption	951 individuals	NA	5p13.3	NR	rs115169076-?	NR	5E-6		0.0392	[0.022-0.056] unit increase	Illumina [~ 7800000] (imputed)	N
842	chr5	33777124	33777125	rs11750049	31497858	Dumitrescu L	2019-09-01	Brain	Sex differences in the genetic predictors of Alzheimer's pathology.	Neurofibrillary tangles	2,701 European ancestry men	NA	5p13.3	ADAMTS12	rs11750049-C	0.145399	6E-6		0.455324	[0.26-0.65] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
843	chr5	33816941	33816942	rs6895892	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5p13.2		rs6895892-?	NR	6E-9				NR [~ 8900000] (imputed)	N
843	chr5	33849489	33849490	rs141759051	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Black (UKB data field 1747_5)	20,700 European ancestry cases, 434,464 European ancestry controls	NA	5p13.2		rs141759051-T	0.008064	6E-19		0.53	[0.41-0.65] unit increase	NR [11842647] (imputed)	N
843	chr5	33849672	33849673	rs111217601	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	5p13.2		rs111217601-?	NR	3E-40				NR [~ 8900000] (imputed)	N
843	chr5	33879791	33879792	rs1364044	22990015	Arning A	2012-09-20	Blood	A genome-wide association study identifies a gene network of ADAMTS genes in the predisposition to pediatric stroke.	Stroke (pediatric)	270 European ancestry trios	NA	5p13.2	ADAMTS12	rs1364044-A	.296	3E-6	(All)	1.91	[NR]	Illumina [334581]	N
843	chr5	33880883	33880884	rs187798257	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Light brown (UKB data field 1747_3)	185,000 European ancestry cases, 270,164 European ancestry controls	NA	5p13.2		rs187798257-T	0.001248	3E-15		0.53	[0.4-0.66] unit decrease	NR [11842647] (imputed)	N
843	chr5	33880883	33880884	rs187798257	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Dark brown (UKB data field 1747_4)	171,614 European ancestry cases, 283,550 European ancestry controls	NA	5p13.2		rs187798257-T	8.326E-4	5E-13		0.49	[0.35-0.63] unit increase	NR [11842647] (imputed)	N
843	chr5	33885272	33885273	rs6451032	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	5p13.2	NR	rs6451032-?	NR	8E-15				Affymetrix [NR]	N
843	chr5	33903211	33903212	rs7735418	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Systolic blood pressure (baseline)	5,304 African American individuals	6,500 African American individuals	5p13.2	NR	rs7735418-A	0.934	7E-7		2.3984	[1.45-3.35] mmHg decrease	Affymetrix, Illumina [NR] (imputed)	N
843	chr5	33945801	33945802	rs993459	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	5p13.2		rs993459-?	NR	1E-300				NR [~ 8900000] (imputed)	N
843	chr5	33946570	33946571	rs35407	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Melanoma	6,777 European ancestry cases, 410,350 European ancestry controls	NA	5p13.2		rs35407-G	NR	2E-19		2.0842018	NR	Affymetrix [7846216] (imputed)	N
843	chr5	33946570	33946571	rs35407	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)(bidirectional)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	5p13.2		rs35407-A	NR	3E-16				Affymetrix [7846216] (imputed)	N
843	chr5	33946570	33946571	rs35407	32041948	Sarin KY	2020-02-10	Nat Commun	Genome-wide meta-analysis identifies eight new susceptibility loci for cutaneous squamous cell carcinoma.	Cutaneous squamous cell carcinoma	19,149 European ancestry cases, 680,049 European ancestry controls	NA	5p13.2	SLC45A2	rs35407-A	0.042	6E-31		0.47	[0.39-0.55] unit decrease	NR [13607369] (imputed)	N
843	chr5	33946570	33946571	rs35407	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Squamous cell carcinoma	9,674 European ancestry cases, 625,657 European ancestry controls	NA	5p13.2	SLC45A2	rs35407-G	0.899754	5E-19		1.724138	[1.43-2.13]	Affymetrix, Illumina [up to 9061544] (imputed)	N
843	chr5	33946570	33946571	rs35407	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Keratinocyte cancer (MTAG)	at least 18,538 European ancestry cases, at least 340,302 European ancestry controls	NA	5p13.2	SLC45A2	rs35407-G	0.980288	5E-45		1.65	[1.54-1.77]	Affymetrix [7600000] (imputed)	N
843	chr5	33946570	33946571	rs35407	28212542	Ransohoff KJ	2017-02-09	Oncotarget	Two-stage genome-wide association study identifies a novel susceptibility locus associated with melanoma.	Melanoma	4,842 European ancestry cases, 286,565 European ancestry controls	1,804 European ancestry cases, 1,026 European ancestry controls	5p13.2	SLC45A2	rs35407-G	0.97	3E-19		2.0833335	[1.79-2.44]	Illumina [at least 560000] (imputed)	N
843	chr5	33946570	33946571	rs35407	27539887	Chahal HS	2016-08-19	Nat Commun	Genome-wide association study identifies 14 novel risk alleles associated with basal cell carcinoma.	Basal cell carcinoma	12.945 European ancestry cases, 274,252 European ancestry controls	4,242 European ancestry cases, 12,802 European ancestry controls	5p13.2	SLC45A2	rs35407-G	0.96	5E-27		1.59	[NR]	Illumina [at least 560000] (imputed)	N
843	chr5	33946570	33946571	rs35407	27424798	Chahal HS	2016-07-18	Nat Commun	Genome-wide association study identifies novel susceptibility loci for cutaneous squamous cell carcinoma.	Cutaneous squamous cell carcinoma	6,579 European ancestry cases, 280,558 European ancestry controls	825 European ancestry cases, 11,518 European ancestry controls	5p13.2	SLC45A2	rs35407-G	0.96	1E-13		1.6949153		Affymetrix, Illumina [at least 560000] (imputed)	N
844	chr5	33948588	33948589	rs35395	31315583	Lona-Durazo F	2019-07-17	BMC Genet	Meta-analysis of GWA studies provides new insights on the genetic architecture of skin pigmentation in recently admixed populations.	Skin pigmentation	1,047 Hispanic/Latin American individuals, 684 Cape Verdian individuals, 373 African American individuals	East African ancestry individuals (See Crawford et. al, 2017)	5p13.2	SLC45A2	rs35395-T	NR	2E-24		0.321	[0.26-0.38] unit decrease	Affymetrix, Illumina [at least 292549] (imputed)	N
844	chr5	33951115	33951116	rs35397	31315583	Lona-Durazo F	2019-07-17	BMC Genet	Meta-analysis of GWA studies provides new insights on the genetic architecture of skin pigmentation in recently admixed populations.	Skin pigmentation	762 Cuban ancestry individuals	NA	5p13.2	SLC45A2	rs35397-?	0.548195	9E-13		0.342625	[0.25-0.44] unit decrease	NR [292549] (imputed)	N
844	chr5	33951692	33951693	rs16891982	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	5p13.2		rs16891982-G	0.97746	8E-14		0.16824	[0.12-0.21] unit decrease	Affymetrix [15580782] (imputed)	N
844	chr5	33951692	33951693	rs16891982	34737440	Lona-Durazo F	2021-11-04	Commun Biol	A large Canadian cohort provides insights into the genetic architecture of human hair colour.	Brown vs. black hair color	10,990 European ancestry individuals	NA	5p13.2		rs16891982-C	NR	1E-14		1.35852	[1.01-1.7] decrease	Affymetrix, Illumina [32876187] (imputed)	N
844	chr5	33951692	33951693	rs16891982	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Skin cancer	25,928 European ancestry cases, 466,275 European ancestry controls, 154 East Asian ancestry cases, 178,572 East Asian ancestry controls	NA	5p13.2		rs16891982-G	NR	1E-28		0.3711	[0.31-0.44] unit increase	Affymetrix, Illumina [25845421] (imputed)	N
844	chr5	33951692	33951693	rs16891982	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	5p13.2		rs16891982-?	NR	4E-22		0.659569	[0.58-0.74]	NR [685523]	N
844	chr5	33951692	33951693	rs16891982	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Melanoma	3,122 White British ancestry cases, 271,708 White British ancestry controls	NA	5p13.2		rs16891982-?	NR	4E-9		0.499299	[0.27-0.73]	NR [674885]	N
844	chr5	33951692	33951693	rs16891982	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Cancer	56,634 White British ancestry cases, 218,196 White British ancestry controls	NA	5p13.2		rs16891982-?	NR	8E-6		0.900053	[0.85-0.95]	NR [688737]	N
844	chr5	33951692	33951693	rs16891982	33893285	Guindo-Martinez M	2021-04-23	Nat Commun	The impact of non-additive genetic associations on age-related complex diseases.	Cancer	17,131 European ancestry cases, 39,506 European ancestry controls	NA	5p13.2		rs16891982-G	0.961912	2E-8		1.24		Affymetrix [15611556] (imputed)	N
844	chr5	33951692	33951693	rs16891982	33692100	Simcoe M	2021-03-10	Sci Adv	Genome-wide association study in almost 195,000 individuals identifies 50 previously unidentified genetic loci for eye color.	Eye color	157,485 European ancestry individuals	35,501 European ancestry individuals, 959 Han Chinese ancestry individuals, 677 Indian ancestry individuals	5p13.2		rs16891982-G	0.958	2E-255	(EA)	0.654	[0.62-0.69] unit decrease	Illumina [11532091] (imputed)	N
844	chr5	33951692	33951693	rs16891982	33600456	Batai K	2021-02-18	PLoS Genet	Genetic loci associated with skin pigmentation in African Americans and their effects on vitamin D deficiency.	Skin reflectance (Melanin index)	395 African American individuals	681 African American individuals	5p13.2	SLC45A2	rs16891982-G	0.18	2E-13		0.029	NR unit decrease	Affymetrix, Illumina [7169107] (imputed)	N
844	chr5	33951692	33951693	rs16891982	33549134	Adolphe C	2021-02-06	Genome Med	Genetic and functional interaction network analysis reveals global enrichment of regulatory T cell genes influencing basal cell carcinoma susceptibility.	Basal cell carcinoma	17,416 European ancestry cases, 375,455 European ancestry controls	NA	5p13.2	SLC45A2	rs16891982-C	0.0245602	4E-23		0.4148334	[0.33-0.5] unit decrease	Affymetrix [7260263] (imputed)	N
844	chr5	33951692	33951693	rs16891982	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous malignant melanoma	36,760 European ancestry cases, 375,188 European ancestry controls	NA	5p13.2	SLC45A2	rs16891982-G	0.8784	1E-112		2.0686803	NR	Affymetrix, Illumina [NR] (imputed)	N
844	chr5	33951692	33951693	rs16891982	32339537	Roberts V	2020-04-24	J Invest Dermatol	Genome wide association study identifies genetic associations with perceived age.	Youthful appearance (self-reported)	423,992 European ancestry individuals	NA	5p13.2	SLC45A2	rs16891982-C	0.0281008	9E-16		1.1092111	NR	Affymetrix [~ 9600000] (imputed)	N
844	chr5	33951692	33951693	rs16891982	31315583	Lona-Durazo F	2019-07-17	BMC Genet	Meta-analysis of GWA studies provides new insights on the genetic architecture of skin pigmentation in recently admixed populations.	Skin pigmentation	1,047 Hispanic/Latin American individuals, 684 Cape Verdian individuals, 373 African American individuals	East African ancestry individuals (See Crawford et. al, 2017)	5p13.2	SLC45A2	rs16891982-C	NR	2E-23		0.317	[0.25-0.38] unit decrease	Affymetrix, Illumina [at least 292549] (imputed)	N
844	chr5	33951692	33951693	rs16891982	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Basal cell carcinoma	31,787 European ancestry cases, 619,351 European ancestry controls	NA	5p13.2	SLC45A2	rs16891982-G	0.878365	4E-41		1.5625	[1.41-1.72]	Affymetrix, Illumina [up to 9061544] (imputed)	N
844	chr5	33951692	33951693	rs16891982	30664655	Adhikari K	2019-01-21	Nat Commun	A GWAS in Latin Americans highlights the convergent evolution of lighter skin pigmentation in Eurasia.	Skin pigmentation	6,236 Latin American individuals	NA	5p13.2	SLC45A2	rs16891982-?	NR	1E-117				Illumina [8896142] (imputed)	N
844	chr5	33951692	33951693	rs16891982	30664655	Adhikari K	2019-01-21	Nat Commun	A GWAS in Latin Americans highlights the convergent evolution of lighter skin pigmentation in Eurasia.	Hair color	6,236 Latin American individuals	NA	5p13.2	SLC45A2	rs16891982-?	NR	6E-66				Illumina [8896142] (imputed)	N
844	chr5	33951692	33951693	rs16891982	30664655	Adhikari K	2019-01-21	Nat Commun	A GWAS in Latin Americans highlights the convergent evolution of lighter skin pigmentation in Eurasia.	Eye color (saturation)	6,236 Latin American individuals	NA	5p13.2	SLC45A2	rs16891982-?	NR	5E-7				Illumina [8896142] (imputed)	N
844	chr5	33951692	33951693	rs16891982	30664655	Adhikari K	2019-01-21	Nat Commun	A GWAS in Latin Americans highlights the convergent evolution of lighter skin pigmentation in Eurasia.	Eye color (brightness)	6,236 Latin American individuals	NA	5p13.2	SLC45A2	rs16891982-?	NR	4E-17				Illumina [8896142] (imputed)	N
844	chr5	33951692	33951693	rs16891982	30664655	Adhikari K	2019-01-21	Nat Commun	A GWAS in Latin Americans highlights the convergent evolution of lighter skin pigmentation in Eurasia.	Eye color	6,236 Latin American individuals	NA	5p13.2	SLC45A2	rs16891982-?	NR	1E-15				Illumina [8896142] (imputed)	N
844	chr5	33951692	33951693	rs16891982	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Sunburns	approximately 344,000 European ancestry individuals	NA	5p13.2		rs16891982-?	NR	3E-320				NR [~ 8900000] (imputed)	N
844	chr5	33951692	33951693	rs16891982	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Brown vs. black hair color	269,394 British ancestry brown hair individuals, 14,526 British ancestry black hair individuals	NA	5p13.2	SLC45A2	rs16891982-?	NR	2E-308		2.833664	NR	Affymetrix [9154080] (imputed)	N
844	chr5	33951692	33951693	rs16891982	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	5p13.2	SLC45A2	rs16891982-?	NR	3E-181		3.2894738	NR	Affymetrix [9154080] (imputed)	N
844	chr5	33951692	33951693	rs16891982	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Skin pigmentation traits	4,988 Spanish ancestry individuals	NA	5p13.2	SLC45A2	rs16891982-?		9E-92	(Fitzpatrick phototype score)	0.3864	[0.35-0.42] unit increase	Illumina [9499600] (imputed)	N
844	chr5	33951692	33951693	rs16891982	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Skin pigmentation traits	4,988 Spanish ancestry individuals	NA	5p13.2	SLC45A2	rs16891982-?		7E-128	(Skin color phototype score)	2.672	[2.46-2.88] unit increase	Illumina [9499600] (imputed)	N
844	chr5	33951692	33951693	rs16891982	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Skin pigmentation traits	4,988 Spanish ancestry individuals	NA	5p13.2	SLC45A2	rs16891982-?		6E-55	(Skin sensitivity to sun)	0.5847	[0.51-0.66] unit increase	Illumina [9499600] (imputed)	N
844	chr5	33951692	33951693	rs16891982	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Skin pigmentation traits	4,988 Spanish ancestry individuals	NA	5p13.2	SLC45A2	rs16891982-?		4E-55	(Skin sensitivity to sun phototype score)	1.849	[1.62-2.08] unit increase	Illumina [9499600] (imputed)	N
844	chr5	33951692	33951693	rs16891982	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Skin pigmentation traits	4,988 Spanish ancestry individuals	NA	5p13.2	SLC45A2	rs16891982-?		2E-48	(Skin sensitivity to sun (high-medium to low-medium))	1.1531582	[0.99-1.31] unit decrease	Illumina [9499600] (imputed)	N
844	chr5	33951692	33951693	rs16891982	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Skin pigmentation traits	4,988 Spanish ancestry individuals	NA	5p13.2	SLC45A2	rs16891982-?		2E-36	(Skin sensitivity to sun (high to low))	1.6247063	[1.35-1.9] unit decrease	Illumina [9499600] (imputed)	N
844	chr5	33951692	33951693	rs16891982	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Skin pigmentation traits	4,988 Spanish ancestry individuals	NA	5p13.2	SLC45A2	rs16891982-?		2E-130	(Skin color)	0.5465	[0.5-0.59] unit decrease	Illumina [9499600] (imputed)	N
844	chr5	33951692	33951693	rs16891982	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Skin pigmentation traits	4,988 Spanish ancestry individuals	NA	5p13.2	SLC45A2	rs16891982-?		1E-122	(Phototype score)	8.183	[7.52-8.84] unit increase	Illumina [9499600] (imputed)	N
844	chr5	33951692	33951693	rs16891982	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Hair morphology traits	4,988 Spanish ancestry individuals	NA	5p13.2	SLC45A2	rs16891982-?		6E-21	(Hair color (brown))	0.6206701	[0.49-0.75] unit decrease	Illumina [9499600] (imputed)	N
844	chr5	33951692	33951693	rs16891982	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Hair morphology traits	4,988 Spanish ancestry individuals	NA	5p13.2	SLC45A2	rs16891982-?		3E-65	(Hair color)	0.3966	[0.35-0.44] unit decrease	Illumina [9499600] (imputed)	N
844	chr5	33951692	33951693	rs16891982	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Hair morphology traits	4,988 Spanish ancestry individuals	NA	5p13.2	SLC45A2	rs16891982-?		3E-42	(Hair color (black))	0.9763537	[0.84-1.12] unit increase	Illumina [9499600] (imputed)	N
844	chr5	33951692	33951693	rs16891982	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Hair morphology traits	4,988 Spanish ancestry individuals	NA	5p13.2	SLC45A2	rs16891982-?		2E-9	(Hair color (light))	1.2450397	[0.84-1.65] unit decrease	Illumina [9499600] (imputed)	N
844	chr5	33951692	33951693	rs16891982	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Hair morphology traits	4,988 Spanish ancestry individuals	NA	5p13.2	SLC45A2	rs16891982-?		1E-70	(Hair color phototype score)	2.145	[1.91-2.38] unit increase	Illumina [9499600] (imputed)	N
844	chr5	33951692	33951693	rs16891982	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Eye color traits	4,988 Spanish ancestry individuals	NA	5p13.2	SLC45A2	rs16891982-?		2E-13	(Eye color)	0.2339	[0.17-0.3] unit decrease	Illumina [9499600] (imputed)	N
844	chr5	33951692	33951693	rs16891982	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Eye color traits	4,988 Spanish ancestry individuals	NA	5p13.2	SLC45A2	rs16891982-?		1E-16	(Eye color phototype score)	0.8276	[0.63-1.02] unit increase	Illumina [9499600] (imputed)	N
844	chr5	33951692	33951693	rs16891982	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	5p13.2	SLC45A2	rs16891982-G	NR	2E-10		0.317457	[0.22-0.41] unit increase	Illumina [at least 950000] (imputed)	N
844	chr5	33951692	33951693	rs16891982	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Low tan response	46,768 European ancestry low tanning cases, 74,528 European ancestry moderate and high tanning controls	15,547 European ancestry low tanning  cases, 39,835 European moderate and high tanning ancestry controls	5p13.2	SLC45A2	rs16891982-C	NR	2E-176		0.918	[0.58-1.26] unit decrease	Affymetrix [8351141] (imputed)	N
844	chr5	33951692	33951693	rs16891982	29662168	Hysi PG	2018-04-16	Nat Genet	Genome-wide association meta-analysis of individuals of European ancestry identifies new loci explaining a substantial fraction of hair color variation and heritability.	Hair color	290,891 European ancestry individuals	27,865 European ancestry individuals	5p13.2	SLC45A2	rs16891982-C	0.054	1E-100		0.436	[0.42-0.45] unit increase	Affymetrix, Illumina [at least 560000] (imputed)	N
844	chr5	33951692	33951693	rs16891982	28300201	Hernandez-Pacheco N	2017-03-16	Sci Rep	Identification of a novel locus associated with skin colour in African-admixed populations.	Skin pigmentation	285 Puerto Rican individuals	373 African American individuals	5p13.2	SLC45A2	rs16891982-G	NR	1E-9		2.85	[3.77-1.94] unit decrease	Affymetrix [14000000] (imputed)	N
844	chr5	33951692	33951693	rs16891982	28212542	Ransohoff KJ	2017-02-09	Oncotarget	Two-stage genome-wide association study identifies a novel susceptibility locus associated with melanoma.	Melanoma	4,842 European ancestry cases, 286,565 European ancestry controls	1,804 European ancestry cases, 1,026 European ancestry controls	5p13.2	SLC45A2	rs16891982-?	0.96	1E-23		2.3809524	[NR]	Illumina [at least 560000] (imputed)	N
844	chr5	33951692	33951693	rs16891982	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Monobrow	69,284 European ancestry individuals	NA	5p13.2	SLC45A2	rs16891982-?	NR	7E-48		0.148	[0.168-0.128] unit decrease	Illumina [12039491] (imputed)	N
844	chr5	33951692	33951693	rs16891982	26829030	Asgari MM	2016-01-29	J Invest Dermatol	Identification of Susceptibility Loci for Cutaneous Squamous Cell Carcinoma.	Squamous cell carcinoma	6,891 European ancestry cases, 54,566 European ancestry controls	810 European ancestry cases,  5,600 European ancestry controls	5p13.2	SLC45A2	rs16891982-?	0.55	3E-28		1.923077	[1.69-2.13]	Affymetrix [9610468] (imputed)	N
844	chr5	33951692	33951693	rs16891982	26184321	Lin BD	2015-07-13	Genes (Basel)	Heritability and Genome-Wide Association Studies for Hair Color in a Dutch Twin Family Based Sample.	Black vs. non-black hair color	196 European ancestry black hair individuals, 6,895 European ancestry non-black hair individuals	NA	5p13.2	SLC45A2	rs16891982-?	0.05	1E-6		4.9177	[4.28-5.56]	Affymetrix, Illumina, Perlegen [6473680] (imputed)	N
844	chr5	33951692	33951693	rs16891982	25963972	Liu F	2015-05-12	Hum Genet	Genetics of skin color variation in Europeans: genome-wide association studies with functional follow-up.	Skin sensitivity to sun	2,668 European ancestry individuals	NA	5p13.2	SLC45A2	rs16891982-C	0.061	7E-6		0.31	[0.17-0.45] unit increase	Illumina [NR] (imputed)	N
844	chr5	33951692	33951693	rs16891982	20585627	Eriksson N	2010-06-24	PLoS Genet	Web-based, participant-driven studies yield novel genetic associations for common traits.	Hair color	9,126 European ancestry individuals	NA	5p13.2	SLC45A2	rs16891982-C	0.03	4E-20	(hair color)	1.1	[NR] unit increase	Illumina [535076]	N
844	chr5	33951692	33951693	rs16891982	20585627	Eriksson N	2010-06-24	PLoS Genet	Web-based, participant-driven studies yield novel genetic associations for common traits.	Hair color	9,126 European ancestry individuals	NA	5p13.2	NR	rs16891982-?	NR	4E-20	(hair color)			Illumina [535076]	N
844	chr5	33951692	33951693	rs16891982	20585627	Eriksson N	2010-06-24	PLoS Genet	Web-based, participant-driven studies yield novel genetic associations for common traits.	Eye color	9,126 European ancestry individuals	NA	5p13.2	SLC45A2	rs16891982-C	0.03	1E-12	(eye color)	0.84	[NR] unit increase	Illumina [535076]	N
844	chr5	33951692	33951693	rs16891982	17999355	Stokowski RP	2007-10-15	Am J Hum Genet	A genomewide association study of skin pigmentation in a South Asian population.	Skin pigmentation	363 South Asian ancestry low maxL* individuals, 374 South Asian ancestry high maxL* individuals	116 South Asian ancestry low maxL* individuals, 115 South Asian ancestry high maxL* individuals	5p13.2	SLC45A2	rs16891982-C	0.83	3E-11		4.86	[2.88-8.21]	Perlegen [1502205]	N
844	chr5	33952105	33952106	rs185146	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Nevus count or cutaneous melanoma	36,760 European ancestry cutaneous melanoma cases, 375,188 European ancestry controls, 12,930 European ancestry individuals, 52,847 individuals	NA	5p13.2	SLC45A2	rs185146-C	0.102033	2E-66				Affymetrix, Illumina [NR] (imputed)	N
844	chr5	33952105	33952106	rs185146	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Hair morphology traits	4,988 Spanish ancestry individuals	NA	5p13.2	SLC45A2	rs185146-?		8E-10	(Hair color (blond))	1.6332735	[1.1-2.16] unit decrease	Illumina [9499600] (imputed)	N
844	chr5	33952105	33952106	rs185146	28502801	Law MH	2017-05-11	J Invest Dermatol	Genome-Wide Association Shows that Pigmentation Genes Play a Role in Skin Aging.	Skin aging (microtopography measurement)	5,087 individuals	NA	5p13.2	SLC45A2	rs185146-T	0.94	4E-9		0.2495	[NR] unit increase	Illumina [at least 233546] (imputed)	N
844	chr5	33952811	33952812	rs173662	33959940	Chen Y	2021-05-06	Br J Dermatol	A GWAS identifies novel gene associations with facial skin wrinkling and mole count in Latin-Americans.	Facial wrinkles (principal components analysis)	6,254 Latin American individuals	NA	5p13.2	NR	rs173662-C	NR	3E-9		0.11	[NR] unit increase	Illumina [8703729] (imputed)	N
844	chr5	33952811	33952812	rs173662	33959940	Chen Y	2021-05-06	Br J Dermatol	A GWAS identifies novel gene associations with facial skin wrinkling and mole count in Latin-Americans.	Facial wrinkles (crow's feet)	6,254 Latin American individuals	NA	5p13.2	NR	rs173662-?		3E-7				Illumina [8703729] (imputed)	N
844	chr5	33955325	33955326	rs35390	21983787	Barrett JH	2011-10-09	Nat Genet	Genome-wide association study identifies three new melanoma susceptibility loci.	Melanoma	2,804 European ancestry cases, 7,618 European ancestry controls	5,551 European ancestry cases, 7,449 European ancestry controls		SLC45A2	rs35390-?	0.98	2E-7		2.78	[1.89-4.35]	Illumina [594997]	N
844	chr5	33955672	33955673	rs35391	34737440	Lona-Durazo F	2021-11-04	Commun Biol	A large Canadian cohort provides insights into the genetic architecture of human hair colour.	Blond vs. brown/black hair color	12,398 European ancestry individuals	NA	5p13.2		rs35391-T	NR	9E-10		0.716239	[0.49-0.95] decrease	Affymetrix, Illumina [32876187] (imputed)	N
844	chr5	33955672	33955673	rs35391	19340012	Nan H	2009-04-02	J Invest Dermatol	Genome-wide association study of tanning phenotype in a population of European ancestry.	Tanning	2,287 European ancestry female individuals	870 European ancestry female individuals	5p13.2	MATP	rs35391-T	NR	3E-10		0.44	[0.30-0.58] tanning ability score decrease	Illumina [528173]	N
844	chr5	33956560	33956561	rs34466007	33959940	Chen Y	2021-05-06	Br J Dermatol	A GWAS identifies novel gene associations with facial skin wrinkling and mole count in Latin-Americans.	Nevus count	6,254 Latin American individuals	NA	5p13.2	SLC45A2	rs34466007-G	NR	9E-11		0.13	[NR] unit decrease	Illumina [8703729] (imputed)	N
844	chr5	33958958	33958959	rs28777	34446064	Cade BE	2021-08-26	Genome Med	Whole-genome association analyses of sleep-disordered breathing phenotypes in the NHLBI TOPMed program.	Obstructive sleep apnea trait (average oxyhemoglobin saturation across sleep episode)	8,225 European ancestry individuals	NA	5p13.2		rs28777-A	NR	8E-10		0.478	[0.33-0.63] unit decrease	Affymetrix, Illumina [22105437] (imputed)	N
844	chr5	33958958	33958959	rs28777	30664655	Adhikari K	2019-01-21	Nat Commun	A GWAS in Latin Americans highlights the convergent evolution of lighter skin pigmentation in Eurasia.	Skin, hair and eye pigmentation (multivariate analysis)	6,236 Latin American individuals	NA	5p13.2	SLC45A2	rs28777-?	NR	9E-127				Illumina [181139] (imputed)	N
844	chr5	33958958	33958959	rs28777	18483556	Han J	2008-05-16	PLoS Genet	A genome-wide association study identifies novel alleles associated with hair color and skin pigmentation.	Black vs. red hair color	2,287 European ancestry female individuals	8,465 European ancestry individuals	5p13.2	MATP	rs28777-C	NR	9E-14		0.46	[0.34-0.58] hair color score decrease	Illumina [528173]	N
844	chr5	33958958	33958959	rs28777	18483556	Han J	2008-05-16	PLoS Genet	A genome-wide association study identifies novel alleles associated with hair color and skin pigmentation.	Black vs. blond hair color	2,287 European ancestry female individuals	8,465 European ancestry individuals	5p13.2	MATP	rs28777-C	NR	1E-17		0.46	[0.36-0.56] hair color score decrease	Illumina [528173]	N
844	chr5	33960447	33960448	rs73077127	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Black (UKB data field 1747_5)	20,700 European ancestry cases, 434,464 European ancestry controls	NA	5p13.2		rs73077127-C	0.001661	2E-25		1.4	[1.14-1.66] unit increase	NR [11842647] (imputed)	N
844	chr5	33963849	33963850	rs116887602	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	5p13.2	SLC45A2	rs116887602-C	1.59E-4	4E-11		3.921	NR	Affymetrix [9154080] (imputed)	N
844	chr5	33963869	33963870	rs26722	33959940	Chen Y	2021-05-06	Br J Dermatol	A GWAS identifies novel gene associations with facial skin wrinkling and mole count in Latin-Americans.	Facial wrinkles (forehead)	6,254 Latin American individuals	NA	5p13.2		rs26722-?		6E-6				Illumina [8703729] (imputed)	N
844	chr5	33963869	33963870	rs26722	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous melanoma or hair colour	36,760 European ancestry cutaneous melanoma cases, 375,188 European ancestry controls, 352,662 European ancestry individuals	NA	5p13.2	SLC45A2	rs26722-C	0.955205	5E-390				Affymetrix, Illumina [NR] (imputed)	N
844	chr5	33964090	33964091	rs201259497	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Dark brown (UKB data field 1747_4)	171,614 European ancestry cases, 283,550 European ancestry controls	NA	5p13.2		rs201259497-T	3.544E-4	3E-12		0.95	[0.68-1.22] unit decrease	NR [11842647] (imputed)	N
844	chr5	33964090	33964091	rs201259497	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Blonde (UKB data field 1747_1)	51,424 European ancestry cases, 403,740 European ancestry controls	NA	5p13.2		rs201259497-T	1.932E-4	5E-22		2.37	[1.89-2.85] unit increase	NR [11842647] (imputed)	N
844	chr5	33964090	33964091	rs201259497	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	5p13.2	SLC45A2	rs201259497-T	2.68E-4	3E-22		4.585	NR	Affymetrix [9154080] (imputed)	N
844	chr5	33964209	33964210	rs183671	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Skin pigmentation traits	4,988 Spanish ancestry individuals	NA	5p13.2	SLC45A2	rs183671-?		8E-9	(Freckling (categorical))	0.2131	[0.14-0.29] unit increase	Illumina [9499600] (imputed)	N
844	chr5	33964209	33964210	rs183671	26926045	Adhikari K	2016-03-01	Nat Commun	A genome-wide association scan in admixed Latin Americans identifies loci influencing facial and scalp hair features.	Hair color	6,357 Latin American individuals	NA	5p13.2	SLC45A2	rs183671-?	NR	2E-59				Illumina [9143600] (imputed)	N
844	chr5	33964209	33964210	rs183671	25963972	Liu F	2015-05-12	Hum Genet	Genetics of skin color variation in Europeans: genome-wide association studies with functional follow-up.	Skin colour saturation	5,857 European ancestry individuals	NA	5p13.2	SLC45A2	rs183671-T	0.0214273518866314	1E-9		0.020743314	[NR] unit increase	Illumina [11155022] (imputed)	N
844	chr5	33967144	33967145	rs35412	25963972	Liu F	2015-05-12	Hum Genet	Genetics of skin color variation in Europeans: genome-wide association studies with functional follow-up.	Perceived skin darkness	9,316 European ancestry individuals	5,278 European ancestry individuals	5p13.2	SLC45A2	rs35412-C	0.0157930681236128	3E-8		0.19732696	[0.13-0.27] unit increase	Illumina [up to 11155022] (imputed)	N
844	chr5	33986408	33986409	rs13289	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	5p13.2	SLC45A2	rs13289-C	0.3727	7E-26		1.087	NR	Affymetrix [9154080] (imputed)	N
844	chr5	34001443	34001444	rs34682	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Longevity	up to 482,000 European ancestry individuals	NA	5p13.2	NR	rs34682-C	NR	1E-7		0.05359	[0.034-0.074] unit decrease	Illumina [~ 540852]	N
844	chr5	34010511	34010512	rs253197	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	5p13.2	NR	rs253197-?	NR	5E-9				Affymetrix [~ 8270000] (imputed)	N
844	chr5	34018622	34018623	rs840390	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	5p13.2	C1QTNF3	rs840390-G	0.86828125	3E-8	(C1QTNF3, 7251_64_3)	0.20337674	[0.13-0.27] unit increase	Illumina [> 1000000] (imputed)	N
844	chr5	34042096	34042097	rs299615	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	5p13.2	RP11-1084J3.4, C1QTNF3	rs299615-A	NR	4E-8		0.0213462	[0.014-0.029] unit decrease	Affymetrix [319769] (imputed)	N
844	chr5	34042096	34042097	rs299615	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	5p13.2	RP11-1084J3.4, C1QTNF3	rs299615-A	NR	3E-8		0.0215474	[0.014-0.029] unit decrease	Affymetrix [319769] (imputed)	N
844	chr5	34042096	34042097	rs299615	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	5p13.2		rs299615-?	NR	9E-10				NR [~ 8900000] (imputed)	N
844	chr5	34042096	34042097	rs299615	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	5p13.2	NR	rs299615-A	0.1518	2E-9		0.0148	[0.0099-0.0197] unit decrease	NR [~ 27400000] (imputed)	N
846	chr5	34266576	34266577	rs11743355	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Inflammatory skin disease	2,079 European ancestry atopic dermatitis cases, 4,212 European ancestry psoriasis cases, 11,899 European ancestry controls	NA	5p13.2	piR-30261	rs11743355-?	NR	3E-6	(Psoriasis)			Affymetrix, Illumina [~ 5200000]	N
847	chr5	34408771	34408772	rs6451076	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	5p13.2	NR	rs6451076-?	NR	2E-24				Affymetrix [NR]	N
848	chr5	34492561	34492562	rs11949100	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	5p13.2		rs11949100-A	NR	5E-15		0.014	[0.01-0.018] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
848	chr5	34492561	34492562	rs11949100	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	5p13.2		rs11949100-A	NR	4E-16		0.0138	[0.01-0.017] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
848	chr5	34492561	34492562	rs11949100	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	5p13.2		rs11949100-A	NR	3E-16		0.0142	[0.011-0.018] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
848	chr5	34492561	34492562	rs11949100	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	5p13.2		rs11949100-A	0.323802	7E-15		0.01843895	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
848	chr5	34500012	34500013	rs10066469	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5p13.2	NR	rs10066469-A	0.465717	1E-21				Affymetrix, Illumina [24558453] (imputed)	N
848	chr5	34503351	34503352	rs1371810	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	5p13.2		rs1371810-T	NR	5E-19		0.0146	[0.011-0.018] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
848	chr5	34503351	34503352	rs1371810	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	5p13.2		rs1371810-T	NR	3E-20		0.0179	[0.014-0.022] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
848	chr5	34503351	34503352	rs1371810	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	5p13.2	RAI14	rs1371810-T	0.452	2E-13		0.0023	[0.0017-0.0029] unit decrease	Affymetrix [NR] (imputed)	N
848	chr5	34504276	34504277	rs13157326	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	5p13.2	RAI14	rs13157326-A	0.4493	1E-25		0.0027	[0.0021-0.0033] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
848	chr5	34504276	34504277	rs13157326	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	5p13.2	RAI14	rs13157326-A	0.4829	1E-20		0.0027	[0.0019-0.0035] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
848	chr5	34504276	34504277	rs13157326	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Chronic kidney disease	64,164 European and unknown ancestry cases, 561,055 European and unknown ancestry controls	NA	5p13.2	RAI14	rs13157326-A	0.45	3E-6		1.0375	[1.0216-1.0537]	Affymetrix, Illumina [9585923] (imputed)	N
848	chr5	34504381	34504382	rs6880621	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	5p13.2	RAI14	rs6880621-A	0.5163	9E-11	(EA)	0.0022	[0.0016-0.0028] unit increase	Affymetrix [NR] (imputed)	N
848	chr5	34504381	34504382	rs6880621	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	5p13.2	intergenic	rs6880621-A	0.5302	4E-9		0.02133613	[0.014-0.028] unit increase	Affymetrix [~ 2500000] (imputed)	N
848	chr5	34504667	34504668	rs11745300	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	5p13.2	RAI14	rs11745300-C	0.5678	5E-17		0.0058	[0.0044-0.0072] unit decrease	Affymetrix, Illumina [8176554] (imputed)	N
848	chr5	34504797	34504798	rs10941191	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in diabetes	70,762 European ancestry individuals, 20,967 African American individuals	NA	5p13.2	RAI14	rs10941191-A	0.541	9E-9		0.547	[0.36-0.73] unit decrease	Affymetrix [NR] (imputed)	N
848	chr5	34505902	34505906	rs141361278	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	5p13.2		rs141361278-A	0.427363	7E-10		0.0138725	[0.0094-0.0183] unit decrease	Affymetrix [93095623] (imputed)	N
848	chr5	34506558	34506559	rs72747621	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	5p13.2		rs72747621-T	NR	6E-9		0.016	[0.011-0.021] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
848	chr5	34506842	34506843	rs11747360	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	5p13.2	NR	rs11747360-A	0.467389	1E-23		0.01866	[0.015-0.022] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
848	chr5	34507417	34507418	rs56395926	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	5p13.2	NR	rs56395926-A	NR	3E-9		0.0175	[0.012-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
848	chr5	34507507	34507508	rs972762	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	5p13.2		rs972762-G	0.466159	3E-16		0.018412214	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
848	chr5	34507507	34507508	rs972762	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	5p13.2		rs972762-G	0.466133	7E-22		0.021598391	[0.017-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
848	chr5	34507784	34507785	rs972761	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	5p13.2	intergenic	rs972761-C		3E-9		0.01	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
848	chr5	34507784	34507785	rs972761	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	5p13.2	intergenic	rs972761-C	0.4664	3E-12		0.02520453	[0.018-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
848	chr5	34507784	34507785	rs972761	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	5p13.2	intergenic	rs972761-C	0.4663	2E-14		0.02745016	[0.02-0.035] unit decrease	Affymetrix [~ 2500000] (imputed)	N
848	chr5	34509824	34509825	rs10066990	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	5p13.2	C1QTNF3, AMACR, RAI14	rs10066990-A	0.3	7E-11		0.406	[0.21-0.6] ml/min/1.73m2 decrease	Affymetrix, Illumina [at least 5248638] (imputed)	N
848	chr5	34510386	34510387	rs7714709	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Glomerular filtration rate	143,658 Japanese ancestry individuals	NA	5p13.2	C1QTNF3-AMACR, RAI14	rs7714709-?	NR	9E-12		0.03046	[0.022-0.039] unit increase novel	Illumina [6108953] (imputed)	N
848	chr5	34510386	34510387	rs7714709	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Creatinine levels	142,097 Japanese ancestry individuals	NA	5p13.2	C1QTNF3-AMACR, RAI14	rs7714709-?	NR	2E-12		0.03079	[0.022-0.039] unit decrease novel	Illumina [6108953] (imputed)	N
848	chr5	34511116	34511117	rs6879561	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	150,266 East Asian ancestry individuals	NA	5p13.2		rs6879561-T	0.236073	1E-12		0.0237471	[0.017-0.03] unit increase	Illumina [13478778] (imputed)	N
848	chr5	34514973	34514974	rs13169378	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	5p13.2		rs13169378-?	NR	3E-14				NR [~ 8900000] (imputed)	N
848	chr5	34516057	34516058	rs9283735	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	5p13.2	RAI14	rs9283735-G	0.6792	3E-12		6.969	NR z score increase	Illumina [26237160] (imputed)	N
848	chr5	34528277	34528278	rs4262079	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	5p13.2		rs4262079-A	0.658956	3E-11		0.01565595	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
848	chr5	34528914	34528915	rs4296778	30954325	Kamboh MI	2019-03-11	Neurobiol Aging	Population-based genome-wide association study of cognitive decline in older adults free of dementia: identification of a novel locus for the attention domain.	Age-related cognitive decline (attention/processing speed) (slope of z-scores)	1,145 European ancestry individuals	NA	5p13.2	C1QTNF3-AMACR, RAI14	rs4296778-C	0.35	9E-6		0.18	unit decrease	Illumina [5600000] (imputed)	N
849	chr5	34628626	34628627	rs409045	19454037	Arnett DK	2009-05-19	BMC Med Genet	Genome-wide association study identifies single-nucleotide polymorphism in KCNB1 associated with left ventricular mass in humans: the HyperGEN Study.	Left ventricular mass	101 European ancestry cases, 101 European ancestry controls	704 European ancestry individuals, 1,467 African American individuals	5p13.2	RAI14	rs409045-?	0.38	8E-7	(EA)	0.0101	[NR] g/m2 increase	Affymetrix [96258]	N
849	chr5	34654476	34654477	rs464609	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5p13.2	NR	rs464609-A	0.502579	1E-10				Affymetrix, Illumina [24649327] (imputed)	N
849	chr5	34654476	34654477	rs464609	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	5p13.2	NR	rs464609-A	0.544492	3E-12		0.012934	[0.0093-0.0166] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
849	chr5	34654476	34654477	rs464609	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5p13.2	NR	rs464609-A	0.502705	4E-18				Affymetrix, Illumina [24588908] (imputed)	N
849	chr5	34654476	34654477	rs464609	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	5p13.2	NR	rs464609-A	0.544517	1E-16		0.01529	[0.012-0.019] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
849	chr5	34654476	34654477	rs464609	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	5p13.2		rs464609-?	NR	1E-8				NR [~ 8900000] (imputed)	N
849	chr5	34655318	34655319	rs461986	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	5p13.2		rs461986-G	NR	3E-9		0.0115	[0.0078-0.0152] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
849	chr5	34656474	34656475	rs115730158	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	5p13.2	RAI14	rs115730158-A	0.064072	2E-12		0.03347957	[0.024-0.043] unit decrease	Affymetrix [93095623] (imputed)	N
849	chr5	34656474	34656475	rs115730158	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	5p13.2	RAI14	rs115730158-A	0.064072	2E-12		0.033391967	[0.024-0.043] unit decrease	Affymetrix [93095623] (imputed)	N
849	chr5	34656474	34656475	rs115730158	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	5p13.2	RAI14	rs115730158-A	0.064118	1E-9		0.028599221	[0.019-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
849	chr5	34656474	34656475	rs115730158	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	5p13.2	RAI14	rs115730158-A	0.06411	9E-10		0.028906912	[0.02-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
849	chr5	34657024	34657025	rs461660	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	5p13.2	NR	rs461660-A	0.54	2E-22		0.018	[0.014-0.022] unit increase	NR [NR]	N
849	chr5	34657024	34657025	rs461660	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals, at least 88,461 European ancestry individuals	NA	5p13.2	RAI14	rs461660-A	0.55	4E-6	(EA)	0.018571429	[0.011-0.027] unit increase	Illumina [1986983] (imputed)	N
849	chr5	34658418	34658419	rs457648	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	5p13.2	RAI14	rs457648-T	0.462083	1E-11		0.015346505	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
849	chr5	34660234	34660235	rs455213	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	5p13.2		rs455213-C	NR	1E-19		0.0165	[0.013-0.02] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
849	chr5	34660234	34660235	rs455213	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	5p13.2	RAI14	rs455213-C	0.458191	2E-12		0.015645819	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
849	chr5	34660234	34660235	rs455213	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5p13.2	NR	rs455213-C	0.411659	4E-17				Affymetrix, Illumina [24332387] (imputed)	N
849	chr5	34660234	34660235	rs455213	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	5p13.2	NR	rs455213-C	0.458789	1E-18		0.016355	[0.013-0.02] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
849	chr5	34660234	34660235	rs455213	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5p13.2	NR	rs455213-C	0.41277	9E-17				Affymetrix, Illumina [24653286] (imputed)	N
849	chr5	34660234	34660235	rs455213	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	5p13.2	RAI14	rs455213-T	0.5964	2E-12		0.0229	[0.016-0.029] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
849	chr5	34660234	34660235	rs455213	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	5p13.2	RAI14	rs455213-T	0.5428	6E-12		0.026532	[0.019-0.034] mg/dL decrease	Affymetrix, Illumina [8217339] (imputed)	N
849	chr5	34660234	34660235	rs455213	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	5p13.2	NR	rs455213-T	0.4008	2E-7	(women)	0.0245	[0.015-0.034] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
849	chr5	34660676	34660677	rs464499	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	5p13.2	RAI14	rs464499-G	0.458252	7E-15		0.017331788	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
849	chr5	34660676	34660677	rs464499	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	5p13.2	RAI14	rs464499-G	0.458246	7E-17		0.0185874	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
849	chr5	34661069	34661070	rs463036	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	5p13.2	NR	rs463036-C	0.537829	3E-18		0.016123	[0.013-0.02] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
849	chr5	34663715	34663716	rs365737	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	5p13.2		rs365737-?	NR	3E-11				NR [~ 8900000] (imputed)	N
849	chr5	34669236	34669237	rs154121	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	5p13.2		rs154121-?	NR	1E-11				NR [~ 8900000] (imputed)	N
849	chr5	34703929	34703930	rs115788537	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Daytime sleep phenotypes	874 European ancestry individuals	NA	5p13.2	RAI14, TTC23L, RPL21P54, RAD1	rs115788537-A	NR	9E-6	(daytime napping duration)	0.1662	[0.093-0.24] unit increase	Affymetrix [7141204] (imputed)	N
849	chr5	34713791	34713792	rs146433259	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	5p13.2	NR	rs146433259-C	0.988308	1E-9		0.0577472	[0.039-0.076] unit increase	Affymetrix [15000001]	N
849	chr5	34713791	34713792	rs146433259	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	5p13.2	RAI14	rs146433259-C	0.988265	5E-8		0.0567916	[0.036-0.077] unit increase	Affymetrix [NR] (imputed)	N
849	chr5	34718342	34718343	rs1545348	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	5p13.2	RAI14	rs1545348-T	NR	5E-7	(EA,men)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
849	chr5	34718342	34718343	rs1545348	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	5p13.2	RAI14	rs1545348-T	0.743	1E-7	(EA,men)	0.024	[0.014-0.034] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
849	chr5	34728418	34728419	rs142482062	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	5p13.2		rs142482062-C	NR	1E-9		0.0693	[0.047-0.092] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
850	chr5	34753121	34753122	rs6893700	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	5p13.2		rs6893700-?	NR	8E-10				NR [~ 8900000] (imputed)	N
850	chr5	34789177	34789178	rs10521017	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5p13.2	FLJ25439	rs10521017-?	NR	5E-6	(beta aminoisobutyric acid)	0.16161422	[0.092-0.231] unit decrease	Affymetrix [at least 2500000] (imputed)	N
850	chr5	34810776	34810777	rs76841445	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	5p13.2	NR	rs76841445-?	NR	4E-6		10667.331	NR unit decrease	Illumina [2379855]	N
850	chr5	34859224	34859225	rs163233	26116289	Raginis-Zborowska A	2015-06-24	Exp Gerontol	Genetic determinants of swallowing impairments among community dwelling older population.	Dysphagia	71 European ancestry older adult cases, 484 European ancestry older adult controls	NA	5p13.2	TTC23L	rs163233-?	NR	8E-6		3.13	[1.89-5.00]	Illumina [4196861] (imputed)	N
851	chr5	34938372	34938373	rs40202	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5p13.2	BXDC2	rs40202-?	NR	1E-20	(beta aminoisobutyric acid)	0.33769745	[0.27-0.41] unit increase	Affymetrix [at least 2500000] (imputed)	N
851	chr5	34948531	34948532	rs37440	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5p13.2	NR	rs37440-T	0.3728	2E-8	(AGXT2)	0.0381	NR unit increase	Illumina [1671387] (imputed)	N
851	chr5	34951149	34951150	rs37439	22566498	Turner ST	2012-05-07	Hypertension	Genomic association analysis identifies multiple loci influencing antihypertensive response to an angiotensin II receptor blocker.	Response to angiotensin II receptor blocker therapy	198 European ancestry hypertensive individuals, 193 African American hypertensive individuals	NA	5p13.2	DNAJC21	rs37439-A	NR	9E-6	(AA)	1.0	[0.53-1.47] unit decrease	Affymetrix [~ 2300000] (imputed)	N
851	chr5	34961479	34961480	rs10941225	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	5p13.2		rs10941225-?	NR	3E-8				NR [~ 8900000] (imputed)	N
851	chr5	34978169	34978170	rs163588	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5p13.2	NR	rs163588-A	0.3676	3E-9	(AGXT2)	0.03795	NR unit decrease	Illumina [1671387] (imputed)	N
852	chr5	34998777	34998778	rs16899972	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	5p13.2	AGXT2	rs16899972-C	0.543301	1E-36	(3-aminoisobutyrate)	0.281	[0.24-0.32] unit decrease	Illumina [13039987] (imputed)	N
852	chr5	34998777	34998778	rs16899972	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5p13.2	NR	rs16899972-C	0.4756	2E-11	(AGXT2)	0.0419	NR unit increase	Illumina [1671387] (imputed)	N
852	chr5	34998876	34998877	rs16899974	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5p13.2	NR	rs16899974-A	0.2387	5E-9	(AGXT2)	0.04385	NR unit decrease	Illumina [1671387] (imputed)	N
852	chr5	35000794	35000795	rs7717823	24586186	Rueedi R	2014-02-20	PLoS Genet	Genome-wide association study of metabolic traits reveals novel gene-metabolite-disease links.	Urinary metabolites (H-NMR features)	835 European ancestry individuals	601 Brazilian individuals	5p13.2	AGXT2	rs7717823-C	0.41	3E-29	(1.2025, Aminoisobutyrate)	0.44	[NR] unit decrease	Illumina [713870] (imputed)	N
852	chr5	35001316	35001317	rs163908	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	5p13.2	AGXT2	rs163908-A	0.443934	4E-91	(3-aminoisobutyrate)	0.46	[0.41-0.51] unit decrease	Illumina [13039987] (imputed)	N
852	chr5	35003111	35003112	rs468327	24586186	Rueedi R	2014-02-20	PLoS Genet	Genome-wide association study of metabolic traits reveals novel gene-metabolite-disease links.	Urinary metabolites (H-NMR features)	835 European ancestry individuals	601 Brazilian individuals	5p13.2	AGXT2	rs468327-G	0.21	4E-15	(3.0275, Aminoisobutyrate)	0.39	[NR] unit increase	Illumina [713870] (imputed)	N
852	chr5	35003111	35003112	rs468327	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5p13.2	DNAJA5	rs468327-?	NR	1E-6	(symmetric dimethylarginine)	0.25021628	[0.15-0.35] unit increase	Affymetrix [at least 2500000] (imputed)	N
852	chr5	35026236	35026237	rs344514	33838163	Luo S	2021-04-07	Kidney Int	Genome-wide association study of serum metabolites in the African American Study of Kidney Disease and Hypertension.	Serum metabolite concentrations in chronic kidney disease	619 African American individuals	NA	5p13.2	AGXT2	rs344514-?	NR	1E-46	(3-aminoisobutyrate)	0.96	[NR] unit increase	Illumina [14760605] (imputed)	N
852	chr5	35033242	35033243	rs2291700	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	5p13.2	AGXT2	rs2291700-A	0.0598547	3E-185	(3-aminoisobutyrate)	1.386	[1.29-1.48] unit decrease	Illumina [13039987] (imputed)	N
852	chr5	35037114	35037115	rs37369	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	5p13.2	AGXT2	rs37369-C	0.702241	8E-58	(3-aminoisobutyrate)	0.407	[0.36-0.46] unit decrease	Illumina [13039987] (imputed)	N
852	chr5	35037114	35037115	rs37369	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5p13.2	NR	rs37369-T	0.1742	5E-16	(AGXT2)	0.06709	NR unit decrease	Illumina [1671387] (imputed)	N
852	chr5	35037114	35037115	rs37369	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite modules (eigenmetabolites) in chronic kidney disease	1,221 cases	406 cases	5p13.2	AGXT2	rs37369-T	0.08	1E-96	(3-aminoisobutyrate, 5-aminovalerate, X-12096, X-12097, X-12117, X-24518)	0.028	[0.026-0.03] unit decrease	Illumina [7750367] (imputed)	N
852	chr5	35037114	35037115	rs37369	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	5p13.2	AGXT2	rs37369-T	0.08	9E-56	(X - 24518)	0.873	[0.76-0.98] unit decrease	Illumina [7750367] (imputed)	N
852	chr5	35037114	35037115	rs37369	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	5p13.2	AGXT2	rs37369-T	0.08	6E-50	(X - 12117)	0.627	[0.54-0.71] unit decrease	Illumina [7750367] (imputed)	N
852	chr5	35037114	35037115	rs37369	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	5p13.2	AGXT2	rs37369-T	0.08	6E-27	(X - 12096)	0.657	[0.54-0.78] unit decrease	Illumina [7750367] (imputed)	N
852	chr5	35037114	35037115	rs37369	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	5p13.2	AGXT2	rs37369-T	0.08	6E-119	(3-aminoisobutyrate)	2.114	[1.94-2.29] unit increase	Illumina [7750367] (imputed)	N
852	chr5	35037114	35037115	rs37369	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	5p13.2	AGXT2	rs37369-T	0.08	4E-48	(X - 12097)	1.009	[0.87-1.14] unit decrease	Illumina [7750367] (imputed)	N
852	chr5	35037114	35037115	rs37369	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	5p13.2	AGXT2	rs37369-T	0.08	2E-24	(X - 24387)	0.476	[0.38-0.57] unit decrease	Illumina [7750367] (imputed)	N
852	chr5	35037114	35037115	rs37369	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	5p13.2	AGXT2	rs37369-T	0.08	1E-14	(5-aminovalerate)	0.632	[0.47-0.79] unit increase	Illumina [7750367] (imputed)	N
852	chr5	35037114	35037115	rs37369	26352407	Raffler J	2015-09-09	PLoS Genet	Genome-Wide Association Study with Targeted and Non-targeted NMR Metabolomics Identifies 15 Novel Loci of Urinary Human Metabolic Individuality.	Urinary metabolites	3,861 European ancestry individuals	1,691European ancestry individuals	5p13.2	AGXT2	rs37369-T	0.09	7E-262	(1.171 ppm/1.973 ppm)	1.2772	[NR] unit increase	Affymetrix [620456]	N
852	chr5	35037114	35037115	rs37369	26352407	Raffler J	2015-09-09	PLoS Genet	Genome-Wide Association Study with Targeted and Non-targeted NMR Metabolomics Identifies 15 Novel Loci of Urinary Human Metabolic Individuality.	Urinary metabolites	3,861 European ancestry individuals	1,691European ancestry individuals	5p13.2	AGXT2	rs37369-T	0.09	2E-252	(3-aminoisobutyrate)	2.224	[NR] unit increase	Affymetrix [620456]	N
852	chr5	35037114	35037115	rs37369	24586186	Rueedi R	2014-02-20	PLoS Genet	Genome-wide association study of metabolic traits reveals novel gene-metabolite-disease links.	Urinary metabolites (H-NMR features)	835 European ancestry individuals	601 Brazilian individuals	5p13.2	AGXT2	rs37369-C	0.08	8E-15	(1.1975, Aminoisobutyrate)	0.41	[NR] unit increase	Illumina [713870] (imputed)	N
852	chr5	35037114	35037115	rs37369	24586186	Rueedi R	2014-02-20	PLoS Genet	Genome-wide association study of metabolic traits reveals novel gene-metabolite-disease links.	Urinary metabolites (H-NMR features)	835 European ancestry individuals	601 Brazilian individuals	5p13.2	AGXT2	rs37369-C	0.08	6E-15	(3.1075, Aminoisobutyrate)	0.43	[NR] unit increase	Illumina [713870] (imputed)	N
852	chr5	35037114	35037115	rs37369	24586186	Rueedi R	2014-02-20	PLoS Genet	Genome-wide association study of metabolic traits reveals novel gene-metabolite-disease links.	Urinary metabolites (H-NMR features)	835 European ancestry individuals	601 Brazilian individuals	5p13.2	AGXT2	rs37369-C	0.08	3E-26	(2.6075, Aminoisobutyrate)	0.52	[NR] unit increase	Illumina [713870] (imputed)	N
852	chr5	35037114	35037115	rs37369	24586186	Rueedi R	2014-02-20	PLoS Genet	Genome-wide association study of metabolic traits reveals novel gene-metabolite-disease links.	Urinary metabolites (H-NMR features)	835 European ancestry individuals	601 Brazilian individuals	5p13.2	AGXT2	rs37369-C	0.08	3E-23	(2.6125, Aminoisobutyrate)	0.49	[NR] unit increase	Illumina [713870] (imputed)	N
852	chr5	35037114	35037115	rs37369	24586186	Rueedi R	2014-02-20	PLoS Genet	Genome-wide association study of metabolic traits reveals novel gene-metabolite-disease links.	Urinary metabolites (H-NMR features)	835 European ancestry individuals	601 Brazilian individuals	5p13.2	AGXT2	rs37369-C	0.08	3E-16	(2.6275, Aminoisobutyrate)	0.42	[NR] unit increase	Illumina [713870] (imputed)	N
852	chr5	35037114	35037115	rs37369	24586186	Rueedi R	2014-02-20	PLoS Genet	Genome-wide association study of metabolic traits reveals novel gene-metabolite-disease links.	Urinary metabolites (H-NMR features)	835 European ancestry individuals	601 Brazilian individuals	5p13.2	AGXT2	rs37369-C	0.08	2E-31	(3.0975, Aminoisobutyrate)	0.56	[NR] unit increase	Illumina [713870] (imputed)	N
852	chr5	35037114	35037115	rs37369	24586186	Rueedi R	2014-02-20	PLoS Genet	Genome-wide association study of metabolic traits reveals novel gene-metabolite-disease links.	Urinary metabolites (H-NMR features)	835 European ancestry individuals	601 Brazilian individuals	5p13.2	AGXT2	rs37369-C	0.08	1E-63	(1.2025, Aminoisobutyrate)	0.77	[NR] unit increase	Illumina [713870] (imputed)	N
852	chr5	35037114	35037115	rs37369	24159190	Seppala I	2013-10-24	Eur Heart J	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Symmetrical dimethylarginine levels	5110 European ancestry individuals	NA	5p13.2	AGXT2	rs37369-T	0.088	1E-40		0.47	[0.4-0.54] unit increase	Affymetrix, Illumina [10085758] (imputed)	N
852	chr5	35037114	35037115	rs37369	24159190	Seppala I	2013-10-24	Eur Heart J	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Serum dimethylarginine levels (asymmetric/symetric ratio)	5110 European ancestry individuals	NA	5p13.2	AGXT2	rs37369-T	0.088	2E-32		0.41	[0.34-0.48] unit decrease	Affymetrix, Illumina [10085758] (imputed)	N
852	chr5	35037114	35037115	rs37369	21931564	Nicholson G	2011-09-08	PLoS Genet	A genome-wide metabolic QTL analysis in Europeans implicates two loci shaped by recent positive selection.	Metabolite levels	142 European ancestry female twins	202 European ancestry individuals	5p13.2	AGXT2	rs37369-T	NR	1E-6	(BAIBu)	1.25	[0.80-1.70] unit increase	Illumina [2541644] (imputed)	N
852	chr5	35037114	35037115	rs37369	21572414	Suhre K	2011-05-15	Nat Genet	A genome-wide association study of metabolic traits in human urine.	Urinary metabolites	862 European ancestry male individuals	1,862 European ancestry individuals	5p13.2	AGXT2	rs37369-T	0.092	2E-182	(3-Aminoisobutyrate concentration)			Affymetrix [645249]	N
852	chr5	35038423	35038424	rs6892674	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5p13.2	NR	rs6892674-C	0.4216	2E-9	(AGXT2)	0.0374	NR unit decrease	Illumina [1671387] (imputed)	N
852	chr5	35039485	35039486	rs37370	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	5p13.2	AGXT2	rs37370-C	0.22351	7E-220	(3-aminoisobutyrate)	0.909	[0.85-0.97] unit increase	Illumina [13039987] (imputed)	N
852	chr5	35039485	35039486	rs37370	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5p13.2	NR	rs37370-C	0.1132	9E-16	(AGXT2)	0.07576	NR unit decrease	Illumina [1671387] (imputed)	N
852	chr5	35039485	35039486	rs37370	24159190	Seppala I	2013-10-24	Eur Heart J	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Asymmetrical dimethylarginine levels	5110 European ancestry individuals	NA	5p13.2	intergenic	rs37370-T	0.906	1E-7		0.184	[0.12-0.25] unit increase	Affymetrix, Illumina [10085758] (imputed)	N
852	chr5	35039485	35039486	rs37370	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5p13.2	PRLR	rs37370-?	NR	6E-83	(beta aminoisobutyric acid)	1.0223343	[0.92-1.13] unit increase	Affymetrix [at least 2500000] (imputed)	N
852	chr5	35040229	35040230	rs37371	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	5p13.2	AGXT2	rs37371-A	0.223708	2E-26	(dimethylarginine (SDMA + ADMA))	0.302	[0.25-0.36] unit increase	Illumina [13039987] (imputed)	N
852	chr5	35044297	35044298	rs28305	25245031	Luneburg N	2014-09-21	Circ Cardiovasc Genet	Genome-wide association study of L-arginine and dimethylarginines reveals novel metabolic pathway for symmetric dimethylarginine.	Symmetrical dimethylarginine levels	3,745 European ancestry individuals, 2,992 individuals	1,152  European ancestry individuals	5p13.2	AGXT2	rs28305-C	0.095 ?	4E-36		0.031	[0.025-0.037] unit increase	Affymetrix, Illumina [up to 2200000] (imputed)	N
852	chr5	35044297	35044298	rs28305	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5p13.2	PRLR	rs28305-?	NR	8E-6	(CE 18:0)	0.2522411	[0.14-0.36] unit decrease	Affymetrix [at least 2500000] (imputed)	N
852	chr5	35045493	35045494	rs37377	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	5p13.2	AGXT2	rs37377-G	0.1	1E-22	(X - 24796)	0.703	[0.56-0.84] unit decrease	Illumina [7750367] (imputed)	N
852	chr5	35045744	35045745	rs40200	33283231	Calvo-Serra B	2020-12-05	Hum Mol Genet	Urinary metabolite quantitative trait loci in children and their interaction with dietary factors.	3-hydroxybutyrate + 3-aminoisobutyrate levels	996 European ancestry individuals	NA	5p13.2		rs40200-A	0.1028	3E-24		0.8139215	unit increase	Illumina [283704]	N
852	chr5	35045744	35045745	rs40200	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5p13.2	NR	rs40200-A	0.1394	4E-16	(AGXT2)	0.0712	NR unit decrease	Illumina [1671387] (imputed)	N
852	chr5	35045744	35045745	rs40200	24586186	Rueedi R	2014-02-20	PLoS Genet	Genome-wide association study of metabolic traits reveals novel gene-metabolite-disease links.	Urinary metabolites (H-NMR features)	835 European ancestry individuals	601 Brazilian individuals	5p13.2	AGXT2	rs40200-G	0.09	9E-37	(3.0925, Aminoisobutyrate)	0.67	[NR] unit increase	Illumina [713870] (imputed)	N
852	chr5	35045825	35045826	rs37379	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	5p13.2	AGXT2	rs37379-A	0.235392	1E-13	(homoarginine)	0.201	[0.15-0.25] unit increase	Illumina [13039987] (imputed)	N
852	chr5	35098299	35098300	rs80254053	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation Hannum age acceleration	6,148 African American individuals	NA	5p13.2	NR	rs80254053-G	0.9402	1E-8		1.0039	[0.66-1.35] unit increase	Affymetrix, Illumina [12989706] (imputed)	N
853	chr5	35162875	35162876	rs74370740	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (PANSS score)	1,390 European ancestry individuals	NA	5p13.2		rs74370740-C	NR	6E-6	(GLM)	8.9397	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
853	chr5	35174921	35174922	rs143210911	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hypothyroidism	1,114 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	5p13.2		rs143210911-C	0.002938031	5E-8		2.9750102	[1.91-4.04] unit increase	Illumina [13429045] (imputed)	N
853	chr5	35174921	35174922	rs143210911	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hyperthyroidism	3,557 European ancestry cases, 456,942 European ancestry controls, 994 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	5p13.2		rs143210911-C	NR	5E-8		2.975	[1.91-4.04] unit increase	Affymetrix, Illumina [25841580] (imputed)	N
853	chr5	35188443	35188444	rs6897259	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	5p13.2	PRLR	rs6897259-T	0.3779	1E-13		0.0145	[0.011-0.018] unit decrease	Affymetrix [18391927] (imputed)	N
853	chr5	35211617	35211618	rs79760761	34748635	Miranda JP	2021-11-08	J Clin Endocrinol Metab	Genome-Wide Association Study And Polygenic Risk Scores Of Serum Dheas Levels In A Chilean Children Cohort.	DHEAS levels	788 Hispanic or Latin American individuals	NA	5p13.2	PRLR	rs79760761-A	0.068	2E-7		0.13	unit increase	Illumina [5510858] (imputed)	N
853	chr5	35220403	35220404	rs10058356	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	5p13.2	PRLR	rs10058356-C	0.3042	2E-9		1.0209157		Affymetrix [11880941] (imputed)	N
853	chr5	35234878	35234879	rs4703398	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	5p13.2	NR	rs4703398-A	NR	8E-10		0.0369	[0.025-0.049] unit decrease	Affymetrix [9000000] (imputed)	N
853	chr5	35239885	35239886	rs12189146	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	5p13.2	NR	rs12189146-G	0.949888	2E-8		0.0320071	[0.021-0.043] unit increase	Affymetrix [16585745] (imputed)	N
853	chr5	35247931	35247932	rs112694713	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	5p13.2	NR	rs112694713-A	0.986735	4E-13		0.0406377	[0.029-0.052] unit increase	Affymetrix [16578495] (imputed)	N
853	chr5	35247931	35247932	rs112694713	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	5p13.2	NR	rs112694713-A	0.986488	2E-19		0.106962	[0.083-0.131] unit increase	Affymetrix [16580851] (imputed)	N
854	chr5	35305152	35305153	rs6869966	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	5p13.2	NR	rs6869966-G	0.3937	9E-10				NR [9056863] (imputed)	N
854	chr5	35349427	35349428	rs549656827	31553412	Legge SE	2019-09-25	JAMA Psychiatry	Association of Genetic Liability to Psychotic Experiences With Neuropsychotic Disorders and Traits.	Psychotic experience	6,123 European ancestry cases, 121,379 European ancestry controls	NA	5p13.2	PRLR	rs549656827-?	NR	3E-8		1.6393442	[1.37-2]	Affymetrix [> 7500000] (imputed)	N
854	chr5	35363908	35363909	rs26193	29730043	Li J	2018-05-02	Schizophr Res	Identifying the genetic risk factors for treatment response to lurasidone by genome-wide association study: A meta-analysis of samples from three independent clinical trials.	Response to lurasidone in schizophrenia	264 European ancestry cases, 158 African American ancestry cases	NA	5p13.2	PRLR, SPEF2	rs26193-A	0.3048	8E-6		4.475	z score increase	Affymetrix, Illumina [up to 1994688]	N
855	chr5	35402187	35402188	rs181169315	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	5p13.2	Intergenic	rs181169315-A	0.059	1E-6		0.179	NR unit decrease	Illumina [NR] (imputed)	N
855	chr5	35426630	35426631	rs9765602	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	5p13.2	Intergenic	rs9765602-C	0.842	4E-6	(AA)	0.154	NR unit increase	Illumina [NR] (imputed)	N
855	chr5	35429448	35429449	rs79643899	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	5p13.2	Intergenic	rs79643899-C	0.842	4E-6	(AA)	0.154	NR unit increase	Illumina [NR] (imputed)	N
855	chr5	35441719	35441720	rs76632111	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	5p13.2	NR	rs76632111-?	NR	7E-9	(Latino)	1.2071	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
855	chr5	35445136	35445137	rs115820958	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Chromatiales abundance in stool	5,959 Finnish ancestry individuals	NA	5p13.2		rs115820958-T	0.0731564	4E-8		0.0312828	[0.02-0.042] unit increase	Illumina [7980478] (imputed)	N
855	chr5	35461199	35461200	rs284737	23319000	Luykx JJ	2013-01-15	Mol Psychiatry	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA/5-HIAA ratio)	up to 398 European ancestry individuals	NA	5p13.2	intergenic	rs284737-C		8E-6		0.2134	unit decrease	Illumina [5767231] (imputed)	N
855	chr5	35472367	35472368	rs17252380	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5p13.2	PRLR	rs17252380-?	NR	9E-6	(SM 16:0)	0.22274292	[0.12-0.32] unit increase	Affymetrix [at least 2500000] (imputed)	N
855	chr5	35476469	35476470	rs186272630	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	5p13.2		rs186272630-T	NR	2E-12		0.1589	[0.11-0.2] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
855	chr5	35476469	35476470	rs186272630	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	5p13.2		rs186272630-T	0.00298600000000004	3E-16		0.17223303	[0.13-0.21] unit decrease	Affymetrix [93095623] (imputed)	N
855	chr5	35476469	35476470	rs186272630	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	5p13.2		rs186272630-T	0.00298699999999996	1E-15		0.16837063	[0.13-0.21] unit decrease	Affymetrix [93095623] (imputed)	N
855	chr5	35476469	35476470	rs186272630	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5p13.2	NR	rs186272630-T	0.00335568	9E-19				Affymetrix, Illumina [23467995] (imputed)	N
855	chr5	35476469	35476470	rs186272630	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	5p13.2	NR	rs186272630-T	0.00343	8E-22		0.160232	[0.13-0.19] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
855	chr5	35482313	35482314	rs17318450	28352666	Liu TC	2017-03-23	JCI Insight	LRRK2 but not ATG16L1 is associated with Paneth cell defect in Japanese Crohn's disease patients.	Paneth cell defects in Crohn's disease	98 Japanese ancestry cases	NA	5p13.2	PRLR	rs17318450-A	NR	2E-6		5.826	unit decrease	Affymetrix [4198245] (imputed)	N
855	chr5	35494447	35494448	rs114092250	26691988	Fritsche LG	2015-12-21	Nat Genet	A large genome-wide association study of age-related macular degeneration highlights contributions of rare and common variants.	Advanced age-related macular degeneration	16,144 European ancestry cases, 17,832 European ancestry controls	473 Asian ancestry cases, 1,099 Asian ancestry controls, 52 African ancestry cases, 361 African ancestry cases, 254 other non-European ancestry cases, 694 other non-European ancestry controls	5p13.2	PRLR, SPEF2	rs114092250-?	NR	2E-8	(EA)	1.4285715		Illumina [12023830] (imputed)	N
856	chr5	35573645	35573646	rs13169267	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	5p13.2		rs13169267-?	NR	2E-8				NR [~ 8900000] (imputed)	N
856	chr5	35649213	35649214	rs13190625	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Periventricular white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	5p13.2	SPEF2	rs13190625-T	0.9284	9E-6		0.0504	[0.028-0.073] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
857	chr5	35670740	35670741	rs6891905	30014611	Weiss RB	2018-07-16	Ann Neurol	Long-range genomic regulators of THBS1 and LTBP4 modify disease severity in Duchenne muscular dystrophy.	Age at loss of ambulation in Duchenne muscular dystrophy	243 European ancestry cases, 10 cases	NA	5p13.2	NR	rs6891905-?	NR	6E-6	(EA)			Illumina [1735619]	N
857	chr5	35670740	35670741	rs6891905	30014611	Weiss RB	2018-07-16	Ann Neurol	Long-range genomic regulators of THBS1 and LTBP4 modify disease severity in Duchenne muscular dystrophy.	Age at loss of ambulation in Duchenne muscular dystrophy	243 European ancestry cases, 10 cases	NA	5p13.2	NR	rs6891905-?	NR	4E-6				Illumina [1735619]	N
857	chr5	35708120	35708121	rs62351900	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5p13.2		rs62351900-?	NR	5E-8				NR [~ 8900000] (imputed)	N
857	chr5	35710905	35710906	rs6875940	33491795	Timmer T	2021-01-25	Vox Sang	Genetic determinants of ferritin, haemoglobin levels and haemoglobin trajectories: results from Donor InSight.	Hemoglobin levels	2,649 European ancestry individuals	NA	5p13.2	SPEF2	rs6875940-G	0.637	6E-6		0.08	[0.04-0.11] unit increase	Affymetrix [7435577] (imputed)	N
857	chr5	35756622	35756623	rs115523707	32372009	de Las Fuentes L	2020-05-05	Mol Psychiatry	Gene-educational attainment interactions in a multi-ancestry genome-wide meta-analysis identify novel blood pressure loci.	Pulse pressure x educational attainment (some college) interaction (2df)	27,617 European ancestry individuals with some college education, 20,253 European ancestry individuals without college education, 8,128 African ancestry individuals with some college education, 8,537 African ancestry individuals without college education, 1,138 Asian ancestry individuals with some college education, 10,214 Asian ancestry individuals without college education, 1,869 Hispanic/Latin American individuals with some college education, 3,276 Hispanic/Latin American individuals without college education	131,584 European ancestry individuals with some college education, 110,940 European ancestry individuals without college education, 1,494 African ancestry individuals with some college education, 5,704 African ancestry individuals without college education, 2,339 Asian ancestry individuals with some college education, 8,567 Asian ancestry individuals without college education, 4,133 Hispanic individuals with some college education, 7,498 Hispanic individuals without college education	5p13.2	SPEF2	rs115523707-T	0.03	7E-9	(African)	2.73	[1.01-4.45] unit decrease	Affymetrix, Illumina [~ 18800000] (imputed)	N
858	chr5	35799993	35799994	rs3822735	23648065	Low SK	2013-05-04	Cancer Sci	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (carboplatin)	261 Japanese ancestry cases, 262 Japanese ancestry controls	NA	5p13.2	SPEF2	rs3822735-G	0.752	2E-6	(Dominant model)	2.062	[1.500-2.834]	Illumina [733202]	N
858	chr5	35800503	35800504	rs2361393	33381925	Buchanan VL	2020-12-30	Pediatr Obes	Genome-wide association study identifying novel variant for fasting insulin and allelic heterogeneity in known glycemic loci in Chilean adolescents: The Santiago Longitudinal Study.	Homeostasis model assessment of insulin resistance	543 Chilean individuals	NA	5p13.2	SPEF2	rs2361393-G	0.19	2E-6		0.224	[0.13-0.32] unit increase	Illumina [NR] (imputed)	N
858	chr5	35801337	35801338	rs11948206	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Number of common colds	43,826 European ancestry cases, 15,720 European ancestry controls	NA	5p13.2	NR	rs11948206-?	NR	9E-6		0.0192	[0.011-0.028] unit increase	Illumina [at least 560000] (imputed)	N
858	chr5	35803576	35803577	rs931555	21244703	Wang JH	2011-01-18	Genome Med	Modeling the cumulative genetic risk for multiple sclerosis from genome-wide association data.	Multiple sclerosis	2,124 cases, 6,720 controls	1,618 cases, 1,988 controls	5p13.2	IL7R	rs931555-?	NR	4E-7		1.25	[1.15-1.36]	Affymetrix, Illumina [~ 2560000] (imputed)	N
858	chr5	35833716	35833717	rs11746643	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	5p13.2	NR	rs11746643-G	0.433	5E-6	(IFNAR2_of_CD4p_T)			Illumina [5084123] (imputed)	N
858	chr5	35837233	35837234	rs12697352	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	5p13.2		rs12697352-A	NR	7E-12		0.0634	[0.045-0.081] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
858	chr5	35837233	35837234	rs12697352	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	5p13.2		rs12697352-A	NR	8E-41		0.0236	[0.02-0.027] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
858	chr5	35837233	35837234	rs12697352	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Asthma	38,369 European ancestry cases, 411,131 European ancestry controls, 13,015 East Asian ancestry cases, 162,933 East Asian ancestry controls	NA	5p13.2		rs12697352-A	NR	3E-14		0.0572	[0.043-0.072] unit decrease	Affymetrix, Illumina [25837673] (imputed)	N
858	chr5	35837233	35837234	rs12697352	32581359	Saevarsdottir S	2020-06-24	Nature	FLT3 stop mutation increases FLT3 ligand level and risk of autoimmune thyroid disease.	Autoimmune thyroid disease	30,234 European ancestry cases, 724,172 European ancestry controls	NA	5p13.2	NR	rs12697352-G	0.667	4E-11		1.0638298	[NR]	Affymetrix, Illumina [42900000] (imputed)	N
858	chr5	35837233	35837234	rs12697352	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	5p13.2	LOC105374724	rs12697352-G	0.66	6E-21				NR [> 9500000] (imputed)	N
858	chr5	35837233	35837234	rs12697352	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	5p13.2	CTD-2113L7.1	rs12697352-A	0.33964	3E-10		0.060907226	[0.042-0.08] unit decrease	Affymetrix [7288503] (imputed)	N
858	chr5	35837233	35837234	rs12697352	30643196	Hitomi Y	2019-01-14	Sci Rep	POGLUT1, the putative effector gene driven by rs2293370 in primary biliary cholangitis susceptibility locus chromosome 3q13.33.	Primary biliary cholangitis	1,855 Japanese ancestry cases, 1,719 Japanese ancestry controls	NA	5p13.2	IL7R, CAPSL	rs12697352-?	NR	2E-9		1.4705882		Affymetrix [NR] (imputed)	N
858	chr5	35837233	35837234	rs12697352	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	5p13.2		rs12697352-?	NR	1E-8				NR [~ 8900000] (imputed)	N
858	chr5	35840723	35840724	rs66570838	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	5p13.2	NR	rs66570838-A	NR	2E-9		0.0218	[0.015-0.029] unit increase	Affymetrix [9000000] (imputed)	N
858	chr5	35840723	35840724	rs66570838	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD127 on CD28+ CD45RA+ CD8+ T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	5p13.2		rs66570838-A	0.10514	3E-14		0.3173	[0.24-0.4] unit decrease	Illumina [17954496] (imputed)	N
858	chr5	35841448	35841449	rs10075764	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hypothyroidism	30,155 European ancestry cases, 379,986 European ancestry controls, 1,114 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	5p13.2		rs10075764-G	NR	4E-8		0.057	[0.037-0.077] unit decrease	Affymetrix, Illumina [25801083] (imputed)	N
858	chr5	35841448	35841449	rs10075764	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	5p13.2		rs10075764-?	NR	7E-9				NR [~ 8900000] (imputed)	N
858	chr5	35844124	35844125	rs1961220	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5p13.2	NR	rs1961220-A	0.312197	2E-66				Affymetrix, Illumina [19872809] (imputed)	N
858	chr5	35844124	35844125	rs1961220	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	5p13.2	NR	rs1961220-A	0.339835	3E-63		0.035152	[0.031-0.039] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
858	chr5	35844124	35844125	rs1961220	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	5p13.2	intergenic	rs1961220-A	0.3399	5E-19		0.03360819	[0.026-0.041] unit decrease	Affymetrix [~ 2500000] (imputed)	N
858	chr5	35844124	35844125	rs1961220	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	5p13.2	intergenic	rs1961220-A	0.34	3E-18		0.03286974	[0.025-0.04] unit decrease	Affymetrix [~ 2500000] (imputed)	N
858	chr5	35846814	35846815	rs4594881	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (adrenergics, inhalants)	28,880 European ancestry cases, 147,565 European ancestry controls, 5,880 East Asian ancestry cases, 172,846 East Asian ancestry controls	NA	5p13.2		rs4594881-T	NR	6E-10		0.0549	[0.037-0.072] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
858	chr5	35846814	35846815	rs4594881	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	5p13.2		rs4594881-G	0.659	2E-29				Affymetrix [10369434] (imputed)	N
858	chr5	35846814	35846815	rs4594881	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	5p13.2		rs4594881-T	0.340739	4E-52		0.03539993	[0.031-0.04] unit decrease	Affymetrix [93095623] (imputed)	N
858	chr5	35846814	35846815	rs4594881	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	5p13.2		rs4594881-T	0.340746	2E-58		0.03750701	[0.033-0.042] unit decrease	Affymetrix [93095623] (imputed)	N
858	chr5	35846814	35846815	rs4594881	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	5p13.2	NR	rs4594881-?	NR	1E-13				Affymetrix [~ 8270000] (imputed)	N
858	chr5	35846814	35846815	rs4594881	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	5p13.2	CAPSL, IL7R, LOC100506406, UGT3A1	rs4594881-G	0.657198	1E-10		1.0425128	[1.03-1.06]	Affymetrix [8274727] (imputed)	N
858	chr5	35846814	35846815	rs4594881	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (adrenergics, inhalants)	28,880 European ancestry cases, 147,565 European ancestry controls	NA	5p13.2	IL7R	rs4594881-T	0.339271	9E-10		0.05842376	[0.04-0.077] unit decrease	Affymetrix [7288503] (imputed)	N
858	chr5	35846814	35846815	rs4594881	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	5p13.2		rs4594881-?	NR	2E-55				NR [~ 8900000] (imputed)	N
858	chr5	35846814	35846815	rs4594881	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	5p13.2	intergenic	rs4594881-T	0.3403	1E-17		0.03235145	[0.025-0.04] unit increase	Affymetrix [~ 2500000] (imputed)	N
858	chr5	35846814	35846815	rs4594881	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	5p13.2	intergenic	rs4594881-T	0.3402	3E-17		0.0317396	[0.024-0.039] unit decrease	Affymetrix [~ 2500000] (imputed)	N
858	chr5	35846814	35846815	rs4594881	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	5p13.2	intergenic	rs4594881-T	0.3403	5E-17		0.03167458	[0.024-0.039] unit decrease	Affymetrix [~ 2500000] (imputed)	N
858	chr5	35848562	35848563	rs7709291	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Eczema	7,884 European ancestry cases, 239,773 European ancestry controls	21,000 cases, 96,000 controls	5p13.2	IL7R	rs7709291-G	0.4135	3E-10		1.113	[1.078-1.149]	Affymetrix [15688218] (imputed)	N
858	chr5	35849940	35849941	rs62355272	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	5p13.2	IL7R	rs62355272-A	0.2571	2E-43		0.05684969	[0.049-0.065] unit increase	Affymetrix [~ 2500000] (imputed)	N
858	chr5	35850148	35850149	rs34463936	34785669	Grosche S	2021-11-16	Nat Commun	Rare variant analysis in eczema identifies exonic variants in DUSP1, NOTCH4 and SLC9A4.	Eczema	20,016 European ancestry cases, 380,433 European ancestry controls	NA	5p13.2		rs34463936-T	0.2788	1E-11		0.92		Affymetrix, Illumina [9397031] (imputed)	N
858	chr5	35850148	35850149	rs34463936	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	2,495 East Asian ancestry cases, 4,283 East Asian ancestry controls	NA	5p13.2		rs34463936-T	NR	3E-8		0.303275	[0.2-0.41] unit decrease	NR [5275424] (imputed)	N
858	chr5	35850148	35850149	rs34463936	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	5p13.2	IL7R	rs34463936-T	0.280449	1E-10		0.01589944	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
858	chr5	35850148	35850149	rs34463936	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic rhinitis	18,915 European ancestry cases, 239,773 European ancestry controls	NA	5p13.2	IL7R	rs34463936-C	0.7201	8E-19		1.1184431	[1.09-1.15]	Affymetrix [15688218] (imputed)	N
858	chr5	35852310	35852311	rs6890853	23000144	Nakamura M	2012-09-18	Am J Hum Genet	Genome-wide association study identifies TNFSF15 and POU2AF1 as susceptibility loci for primary biliary cirrhosis in the Japanese population.	Primary biliary cholangitis	487 Japanese ancestry cases, 476 Japanese ancestry controls	787 Japanese ancestry cases, 615 Japanese ancestry controls	5p13.2	IL7R	rs6890853-G	NR	4E-8		1.47	[1.28-1.69]	Affymetrix [421245]	N
858	chr5	35852969	35852970	rs151286246	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	5p13.2	IL7R	rs151286246-C	0.2592	2E-19		0.03670038	[0.029-0.045] unit decrease	Affymetrix [~ 2500000] (imputed)	N
858	chr5	35852969	35852970	rs151286246	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	5p13.2	IL7R	rs151286246-C	0.2592	3E-29		0.04573874	[0.038-0.054] unit increase	Affymetrix [~ 2500000] (imputed)	N
858	chr5	35853318	35853319	rs13188960	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5p13.2	NR	rs13188960-T	0.262008	4E-16				Affymetrix, Illumina [19905671] (imputed)	N
858	chr5	35853318	35853319	rs13188960	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	5p13.2	NR	rs13188960-T	0.27945	5E-17		0.019117	[0.015-0.024] SD unit decrease	Affymetrix, Illumina [50036608] (imputed)	N
858	chr5	35857583	35857583	rs10624573	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5p13.2	IL7R	rs10624573-CAGAAG	0.399	2E-33	(Interleukin-7 receptor subunit alpha, IL7R.5089.11.3)	0.3	[0.26-0.34] unit increase	Affymetrix [10572788] (imputed)	N
858	chr5	35857703	35857704	rs11567694	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Respiratory diseases	approximately 459,000 European ancestry individuals	NA	5p13.2		rs11567694-?	NR	7E-10				NR [~ 8900000] (imputed)	N
858	chr5	35859010	35859011	rs11567699	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	5p13.2	IL7R	rs11567699-G	0.260309	5E-108		0.05560512	[0.051-0.061] unit increase	Affymetrix [93095623] (imputed)	N
858	chr5	35859010	35859011	rs11567699	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5p13.2	NR	rs11567699-G	0.235257	3E-144				Affymetrix, Illumina [23472807] (imputed)	N
858	chr5	35859862	35859863	rs11567701	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	5p13.2		rs11567701-T	NR	1E-72		0.0467	[0.042-0.052] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
858	chr5	35859862	35859863	rs11567701	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	5p13.2		rs11567701-G	0.739	8E-38				Affymetrix [10369434] (imputed)	N
858	chr5	35859862	35859863	rs11567701	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	5p13.2		rs11567701-G	0.739	8E-50				Affymetrix [10369434] (imputed)	N
858	chr5	35859862	35859863	rs11567701	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	5p13.2	IL7R	rs11567701-T	0.260289	4E-44		0.03511436	[0.03-0.04] unit decrease	Affymetrix [93095623] (imputed)	N
858	chr5	35859862	35859863	rs11567701	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	5p13.2	IL7R	rs11567701-T	0.260269	1E-63		0.04246806	[0.038-0.047] unit increase	Affymetrix [93095623] (imputed)	N
858	chr5	35859862	35859863	rs11567701	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	5p13.2	NR	rs11567701-T	0.261577	2E-141		0.054358	[0.05-0.059] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
858	chr5	35862840	35862841	rs7717955	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	5p13.2		rs7717955-T	NR	8E-10		0.0146	[0.0099-0.0193] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
858	chr5	35862840	35862841	rs7717955	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (glucocorticoids)	17,352 European ancestry cases, 188,348 European ancestry controls, 13,102 East Asian ancestry cases, 165,624 East Asian ancestry controls	NA	5p13.2		rs7717955-T	NR	8E-9		0.0571	[0.038-0.077] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
858	chr5	35862840	35862841	rs7717955	34116867	Tanaka N	2021-06-02	J Allergy Clin Immunol	Eight novel susceptibility loci and putative causal variants in atopic dermatitis.	Atopic dermatitis	2,597 Japanese ancestry cases, 110,504 Japanese ancestry controls, 25,685 European ancestry cases, 76,768 European ancestry controls	NA	5p13.2		rs7717955-?	NR	1E-13		0.92	[0.9-0.94]	Illumina [5170515] (imputed)	N
858	chr5	35862840	35862841	rs7717955	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	5p13.2	IL7R	rs7717955-C	0.728091	1E-19		1.0628034	[1.04888561173507-1.07690588287531]	NR [9572556] (imputed)	N
858	chr5	35862840	35862841	rs7717955	30013184	Waage J	2018-07-16	Nat Genet	Genome-wide association and HLA fine-mapping studies identify risk loci and genetic pathways underlying allergic rhinitis.	Allergic rhinitis	59,762 European and unknown ancestry cases, 152,358 European and unknown ancestry controls	60,720 European ancestry cases, 618,527 European ancestry controls	5p13.2	CAPSL, IL7R	rs7717955-C	0.7333	4E-32		1.0638298	[1.05-1.08]	Affymetrix, Illumina, Perlegen [16531985] (imputed)	N
858	chr5	35862840	35862841	rs7717955	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	5p13.2	IL7R	rs7717955-C	0.71	9E-36		1.073	[1.06-1.08]	Affymetrix, Illumina [8307659] (imputed)	N
858	chr5	35866217	35866218	rs6451229	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL7R	5,367 Icelandic ancestry individuals	NA	5p13.2		rs6451229-G	0.3317	8E-32		0.234118	[0.2-0.27] unit increase	Illumina [7506463] (imputed)	N
858	chr5	35866217	35866218	rs6451229	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	5p13.2	IL7R	rs6451229-A	0.669375	1E-18	(IL7R, 5089_11_3)	0.22582264	[0.18-0.28] unit decrease	Illumina [> 1000000] (imputed)	N
858	chr5	35872189	35872190	rs11567754	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD127 on CD45RA+ CD4+ T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	5p13.2		rs11567754-A	0.10497	8E-12		0.2975	[0.21-0.38] unit decrease	Illumina [17954496] (imputed)	N
858	chr5	35874574	35874575	rs6897932	28062665	Kawashima M	2017-01-05	Hum Mol Genet	Genome-wide association studies identify PRKCB as a novel genetic susceptibility locus for primary biliary cholangitis in the Japanese population.	Primary biliary cholangitis	1,381 Japanese ancestry cases, 1,505 Japanese ancestry controls	512 Japanese ancestry cases, 6,512 Japanese ancestry controls	5p13.2	IL7R	rs6897932-T	0.195130086724483	6E-9		1.5187576	[1.319-1.749]	Affymetrix [425290]	N
858	chr5	35874574	35874575	rs6897932	21833088	Sawcer S	2011-08-11	Nature	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	5p13.2	IL7R	rs6897932-G	NR	2E-8		1.11	[1.09-1.13]	Illumina [465434]	N
858	chr5	35874574	35874575	rs6897932	19525953	De Jager PL	2009-06-14	Nat Genet	Meta-analysis of genome scans and replication identify CD6, IRF8 and TNFRSF1A as new multiple sclerosis susceptibility loci.	Multiple sclerosis	2,624 European ancestry cases, 7,220 European ancestry controls	2,215 European ancestry cases, 2,116 European ancestry controls	5p13.2	IL7R	rs6897932-C	0.75	2E-6		1.12	[1.02-1.23]	Affymetrix, Illumina [~ 2560000] (imputed)	N
858	chr5	35874574	35874575	rs6897932	17660530	Hafler DA	2007-07-29	N Engl J Med	Risk alleles for multiple sclerosis identified by a genomewide study.	Multiple sclerosis	931 European ancestry trios, 2,431 European ancestry controls	609 European ancestry trios, 2,322 European ancestry cases, 2,987 European ancestry controls	5p13.2	IL7RA	rs6897932-C	0.75	3E-7		1.18	[1.11-1.26]	Affymetrix [334923]	N
858	chr5	35874574	35874575	rs6897932	17554260	Todd JA	2007-06-06	Nat Genet	Robust associations of four new chromosome regions from genome-wide analyses of type 1 diabetes.	Type 1 diabetes	2,000 European ancestry cases, 3,000 European ancestry controls	2,997 European ancestry trios, 4,000 European ancestry cases, 5,000 European ancestry controls	5p13.2	IL7R	rs6897932-G	0.71	8E-6		1.12	[1.06-1.19]	Affymetrix [NR]	N
858	chr5	35875133	35875134	rs3822733	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	5p13.2		rs3822733-?	NR	6E-14				NR [~ 8900000] (imputed)	N
858	chr5	35875226	35875227	rs987107	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	5p13.2		rs987107-A	NR	2E-13		0.0184	[0.013-0.023] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
858	chr5	35875226	35875227	rs987107	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	5p13.2	NR	rs987107-A	0.261079	3E-22		0.020353	[0.016-0.024] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
858	chr5	35876273	35876274	rs3194051	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	5p13.2		rs3194051-A	0.74	2E-39				Affymetrix [10369434] (imputed)	N
858	chr5	35876273	35876274	rs3194051	21297633	Anderson CA	2011-02-06	Nat Genet	Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47.	Ulcerative colitis	6,687 European ancestry cases, 19,718 European ancestry controls	9,628 European ancestry cases, 12,917 European ancestry controls	5p13.2	IL7R	rs3194051-G	0.27	4E-8		1.07	[1.02-1.12]	Affymetrix, Illumina [~ 1100000] (imputed)	N
858	chr5	35877504	35877505	rs10063294	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	5p13.2	IL7R	rs10063294-G	NR	2E-28		1.1268876	NR	Affymetrix, Illumina [8278136] (imputed)	N
858	chr5	35879094	35879095	rs6881270	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	5p13.2	NR	rs6881270-C	0.7254	1E-48		1.1035092	[1.09-1.12]	Affymetrix [15688218] (imputed)	N
858	chr5	35879094	35879095	rs6881270	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic disease (asthma, hay fever or eczema)	106,772 European ancestry cases, 239,773 European ancestry controls	83,335 cases, 34,934 controls	5p13.2	NR	rs6881270-C	0.7254	3E-44		1.0895619	[1.08-1.1]	Affymetrix [15688218] (imputed)	N
858	chr5	35879094	35879095	rs6881270	29785011	Zhu Z	2018-05-21	Nat Genet	A genome-wide cross-trait analysis from UK Biobank highlights the shared genetic architecture of asthma and allergic diseases.	Asthma or allergic disease (pleiotropy)	14,085 European asthma cases, 25,685 European ancestry allergic diseases cases, 76,768 European ancestry controls	NA	5p13.2	CAPSL, IL7R, LOC100506406, SPEF2, UGT3A1	rs6881270-?	NR	2E-14		1.098901		NR [74888535] (imputed)	N
858	chr5	35879094	35879095	rs6881270	29785011	Zhu Z	2018-05-21	Nat Genet	A genome-wide cross-trait analysis from UK Biobank highlights the shared genetic architecture of asthma and allergic diseases.	Allergic disease (asthma, hay fever or eczema)	25,685 European ancestry allergic diseases cases, 76,768 European ancestry controls	NA	5p13.2	CAPSL, IL7R, LOC100506406, SPEF2, UGT3A1	rs6881270-?	NR	3E-15		1.098901	[1.08-1.12]	Affymetrix [74888535] (imputed)	N
858	chr5	35879155	35879156	rs6881706	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	5p13.2		rs6881706-?	NR	2E-59				NR [~ 8900000] (imputed)	N
858	chr5	35879155	35879156	rs6881706	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	5p13.2	IL7R	rs6881706-C	0.73	4E-17		1.12		Illumina [161311]	N
858	chr5	35881130	35881130	rs35467801	34103634	Valette K	2021-06-08	Commun Biol	Prioritization of candidate causal genes for asthma in susceptibility loci derived from UK Biobank.	Asthma	56,167 White-British ancestry cases, 352,255 White-British ancestry controls	NA	5p13.2	IL7R, CAPSL	rs35467801-GT	0.27480322400102	5E-10		0.04543252	[0.031-0.06] unit decrease	Affymetrix [35186738] (imputed)	N
858	chr5	35881130	35881130	rs35467801	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	8,021 European ancestry cases, 16,489 European ancestry controls	NA	5p13.2		rs35467801-GT	NR	6E-19		0.223662	[0.17-0.27] unit decrease	NR [5054572] (imputed)	N
858	chr5	35881375	35881376	rs11742240	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	5p13.2	IL7R	rs11742240-T	0.2743	3E-16				Affymetrix [15688218] (imputed)	N
858	chr5	35881375	35881376	rs11742240	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (adult onset)	26,582 European ancestry cases, 300,671 European ancestry controls	16,297 European ancestry cases, 217,711 European ancestry controls	5p13.2	IL7R, CAPSL	rs11742240-?	NR	9E-14		1.058	[1.04-1.07]	Affymetrix [9000000] (imputed)	N
858	chr5	35881375	35881376	rs11742240	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	5p13.2	IL7R, CAPSL	rs11742240-G	NR	2E-13		1.057	[1.04-1.07]	Affymetrix [9000000] (imputed)	N
858	chr5	35881442	35881443	rs11742270	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	8,021 European ancestry cases, 16,489 European ancestry controls, 2,495 East Asian ancestry cases, 4,283 East Asian ancestry controls	NA	5p13.2		rs11742270-A	NR	4E-24		0.236105	[0.19-0.28] unit decrease	NR [2787054] (imputed)	N
858	chr5	35881442	35881443	rs11742270	23749187	Cortes A	2013-07-01	Nat Genet	Identification of multiple risk variants for ankylosing spondylitis through high-density genotyping of immune-related loci.	Ankylosing spondylitis	9,069 European ancestry cases, 1,550 East Asian ancestry cases, 13,578 European ancestry controls, 1,567 East Asian ancestry controls	NA	5p13.2	IL7R	rs11742270-G	0.728	5E-7		1.11		Illumina [128935]	N
858	chr5	35881442	35881443	rs11742270	23749187	Cortes A	2013-07-01	Nat Genet	Identification of multiple risk variants for ankylosing spondylitis through high-density genotyping of immune-related loci.	Ankylosing spondylitis	9,069 European ancestry cases, 1,550 East Asian ancestry cases, 13,578 European ancestry controls, 1,567 East Asian ancestry controls	NA	5p13.2	IL7R	rs11742270-G	0.728	2E-6	(EA)	1.11		Illumina [128935]	N
858	chr5	35883175	35883176	rs11957503	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	5p13.2	CTD-2113L7.1, IL7R	rs11957503-G	0.437249	2E-21	(Interleukin-7 receptor subunit alpha)	0.4248	[0.34-0.51] unit increase	Affymetrix [509946]	N
858	chr5	35883240	35883241	rs11960511	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	5p13.2		rs11960511-A	0.741	7E-31				Affymetrix [10369434] (imputed)	N
858	chr5	35883240	35883241	rs11960511	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	5p13.2	IL7R	rs11960511-G	0.258839	6E-19		0.02243749	[0.017-0.027] unit increase	Affymetrix [93095623] (imputed)	N
858	chr5	35883240	35883241	rs11960511	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	5p13.2	IL7R	rs11960511-G	0.258934	1E-9		0.015546775	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
858	chr5	35883240	35883241	rs11960511	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5p13.2	NR	rs11960511-G	0.226192	2E-21				Affymetrix, Illumina [24649327] (imputed)	N
858	chr5	35883250	35883251	rs11954020	25751624	Onengut-Gumuscu S	2015-04-01	Nat Genet	Fine mapping of type 1 diabetes susceptibility loci and evidence for colocalization of causal variants with lymphoid gene enhancers.	Type 1 diabetes	6,683 European ancestry cases, 12,173 European ancestry controls, 2,601 European ancestry affected sibling pair families, 69 European ancestry trios	NA	5p13.2	IL7R	rs11954020-G	0.39	4E-8		1.11		Illumina [135870]	N
858	chr5	35883733	35883734	rs10214237	26482879	Paternoster L	2015-10-19	Nat Genet	Multi-ancestry genome-wide association study of 21,000 cases and 95,000 controls identifies new risk loci for atopic dermatitis.	Atopic dermatitis	18,900 European ancestry cases, 1,472 Japanese ancestry cases, 422 African American cases, 300 Latino cases, 305 cases, 84,166 European ancestry controls, 7,966 Japanese ancestry controls, 844 African American controls, 1,592 Latino controls, 896 controls	30,588 European ancestry cases, 459 African American cases, 1,012 Chinese ancestry cases, 226,537 European ancestry controls, 729 African American controls, 1,362 Chinese ancestry controls	5p13.2	IL7R, CAPSL	rs10214237-T	0.73	3E-14	(EA, fixed effects)	1.0638298		Illumina [15539996] (imputed)	N
858	chr5	35883733	35883734	rs10214237	26482879	Paternoster L	2015-10-19	Nat Genet	Multi-ancestry genome-wide association study of 21,000 cases and 95,000 controls identifies new risk loci for atopic dermatitis.	Atopic dermatitis	18,900 European ancestry cases, 1,472 Japanese ancestry cases, 422 African American cases, 300 Latino cases, 305 cases, 84,166 European ancestry controls, 7,966 Japanese ancestry controls, 844 African American controls, 1,592 Latino controls, 896 controls	30,588 European ancestry cases, 459 African American cases, 1,012 Chinese ancestry cases, 226,537 European ancestry controls, 729 African American controls, 1,362 Chinese ancestry controls	5p13.2	IL7R, CAPSL	rs10214237-C	0.27	2E-10	(random effects)		NR	Illumina [15539996] (imputed)	N
858	chr5	35885981	35885982	rs6871748	33536424	Wang YF	2021-02-03	Nat Commun	Identification of 38 novel loci for systemic lupus erythematosus and genetic heterogeneity between ancestral groups.	Systemic lupus erythematosus	4,222 Han Chinese ancestry cases, 8,431 Han Chinese ancestry controls, 4,576 European ancestry cases, 8,039 European ancestry controls	NA	5p13.2	IL7R, CAPSL	rs6871748-C	NR	4E-8		0.89	[0.85-0.93]	Illumina [NR] (imputed)	N
858	chr5	35885981	35885982	rs6871748	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	5p13.2		rs6871748-C	0.275503	5E-14		0.018758032	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
858	chr5	35885981	35885982	rs6871748	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	5p13.2	NR	rs6871748-T	0.725289	5E-8		0.0117199	[0.0075-0.0159] unit decrease	Affymetrix [15000001]	N
858	chr5	35885981	35885982	rs6871748	22961000	Liu JZ	2012-10-01	Nat Genet	Dense fine-mapping study identifies new susceptibility loci for primary biliary cirrhosis.	Primary biliary cirrhosis	2,861 British and Irish ancestry cases, 8,514 British and Irish ancestry controls	NA	5p13.2	IL7R, CAPSL, SPEF2, UGT3A1	rs6871748-A	0.72	2E-13		1.3	[1.21-1.4]	Illumina [237619] (imputed)	N
858	chr5	35886259	35886270	rs56738644	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD127 on CD28+ CD4+ T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	5p13.2		rs56738644-T	0.09188	2E-11		0.3199	[0.23-0.41] unit decrease	Illumina [17954496] (imputed)	N
858	chr5	35886730	35886731	rs16899999	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD127 on CD45RA- CD4 not regulatory T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	5p13.2		rs16899999-G	0.11011	5E-9		0.2507	[0.17-0.33] unit decrease	Illumina [17954496] (imputed)	N
858	chr5	35886730	35886731	rs16899999	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD127 on CD4+ T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	5p13.2		rs16899999-G	0.11011	7E-10		0.2657	[0.18-0.35] unit decrease	Illumina [17954496] (imputed)	N
858	chr5	35892036	35892037	rs62351974	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	5p13.2		rs62351974-T	0.709211	3E-12		1.0332444	[1.02-1.04]	Affymetrix, Illumina [9851866] (imputed)	N
858	chr5	35895781	35895782	rs116269315	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	5p13.2		rs116269315-G	NR	4E-8		0.0422	[0.027-0.057] unit increase	Affymetrix, Illumina [20529698] (imputed)	N
858	chr5	35910528	35910529	rs1445898	17554260	Todd JA	2007-06-06	Nat Genet	Robust associations of four new chromosome regions from genome-wide analyses of type 1 diabetes.	Type 1 diabetes	2,000 European ancestry cases, 3,000 European ancestry controls	2,997 European ancestry trios, 4,000 European ancestry cases, 5,000 European ancestry controls	5p13.2	CAPSL	rs1445898-G	0.55	8E-6		1.12	[1.06-1.19]	Affymetrix [NR]	N
859	chr5	35933818	35933819	rs6892087	33213513	Ibanez L	2020-11-19	Acta Neuropathol Commun	Functional genomic analyses uncover APOE-mediated regulation of brain and cerebrospinal fluid beta-amyloid levels in Parkinson disease.	Alpha synuclein levels (MTAG)	1744 European ancestry individuals	NA	5p13.2	NR	rs6892087-G	NR	8E-6		0.025706245	[0.014-0.037] unit decrease	Illumina [NR] (imputed)	N
859	chr5	35934156	35934157	rs700172	22936693	Juran BD	2012-08-29	Hum Mol Genet	Immunochip analyses identify a novel risk locus for primary biliary cirrhosis at 13q14, multiple independent associations at four established risk loci and epistasis between 1p31 and 7q32 risk variants.	Primary biliary cirrhosis	2,216 European ancestry cases, 5,594 Europen ancestry controls	NA	5p13.2	NR	rs700172-A		2E-6		1.27	[1.15-1.40]	Illumina [109812]	N
859	chr5	35943041	35943042	rs860413	26394269	Cordell HJ	2015-09-22	Nat Commun	International genome-wide meta-analysis identifies new primary biliary cirrhosis risk loci and targetable pathogenic pathways.	Primary biliary cholangitis	2,764 European ancestry cases, 10,475 European ancestry controls	3,716 European ancestry cases,  4,261 European ancestry controls	5p13.2	IL7R, CAPSL, UGT3A1	rs860413-A	0.79	5E-11		1.28	NR	Illumina [1143634] (imputed)	N
859	chr5	35943041	35943042	rs860413	21399635	Mells GF	2011-03-13	Nat Genet	Genome-wide association study identifies 12 new susceptibility loci for primary biliary cirrhosis.	Primary biliary cholangitis	1,840 European ancestry cases, 5,163 European ancestry controls and (Liu et al)	620 European ancestry cases, 2,514 European ancestry controls	5p13.2	IL7R	rs860413-A	0.72	1E-11		1.3	[1.21-1.40]	Illumina [507467]	N
859	chr5	35965969	35965970	rs3756669	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	5p13.2	UGT3A1	rs3756669-A	0.829598	4E-19	(5alpha-pregnan-3beta,20beta-diol monosulfate (1))	0.247	[0.19-0.3] unit decrease	Illumina [13039987] (imputed)	N
859	chr5	35967999	35968000	rs10491431	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	5p13.2	UGT3A1	rs10491431-A	0.15	2E-11	(X-11445--5-alpha-pregnan-3beta,20alpha-disulfate)	0.081	[0.057-0.105] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
859	chr5	35979544	35979545	rs113590482	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	5p13.2	UGT3A1	rs113590482-G	0.829153	5E-23	(pregn steroid monosulfate C21H34O5S*)	0.301	[0.24-0.36] unit decrease	Illumina [13039987] (imputed)	N
859	chr5	35979544	35979545	rs113590482	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	5p13.2	UGT3A1	rs113590482-T	0.14	5E-37	(N-acetylglucosamine conjugate of C24H40O4 bile acid)	1.079	[0.91-1.25] unit decrease	Illumina [7750367] (imputed)	N
859	chr5	35980474	35980475	rs6889699	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	5p13.2	UGT3A1	rs6889699-T	0.14	1E-70	(X - 24348)	1.216	[1.08-1.35] unit decrease	Illumina [7750367] (imputed)	N
859	chr5	35989805	35989806	rs13358334	23093944	Krumsiek J	2012-10-18	PLoS Genet	Mining the unknown: a systems approach to metabolite identification combining genetic and metabolic information.	Serum metabolite levels	1,678 European ancestry individuals	NA	5p13.2	UGT3A1	rs13358334-?	NR	2E-12	(X-11445)	0.08772	[NR] unit increase	Affymetrix [655658]	N
859	chr5	35989988	35989989	rs73076175	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	5p13.2	UGT3A1	rs73076175-A	0.804335	1E-17	(pregnen-diol disulfate C21H34O8S2*)	0.245	[0.19-0.3] unit decrease	Illumina [13039987] (imputed)	N
859	chr5	36012616	36012617	rs1073548	34255042	Schmitz D	2021-07-13	J Clin Endocrinol Metab	Genome-Wide Association Study of Estradiol Levels, and the Causal Effect of Estradiol on Bone Mineral Density.	Estradiol levels	13,367 European ancestry male cases, 134,323 European ancestry male controls	NA	5p13.2	UGT3A1	rs1073548-G	0.126	2E-8		1.113	[1.072-1.155]	Affymetrix [7871717] (imputed)	N
859	chr5	36021462	36021463	rs2362263	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	5p13.2	NR	rs2362263-C	NR	4E-10		0.0189	[0.013-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
859	chr5	36044551	36044552	rs114926104	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	5p13.2	UGT3A2	rs114926104-T	0.0435527952424414	4E-7	(G_unclassified_C_Clostridia_RNT)	0.374861	[0.23-0.52] unit decrease	Illumina [7711310] (imputed)	N
860	chr5	36048395	36048396	rs1287275	28054174	Leslie EJ	2017-01-04	Hum Genet	Genome-wide meta-analyses of nonsyndromic orofacial clefts identify novel associations between FOXE1 and all orofacial clefts, and TP63 and cleft lip with or without cleft palate.	Cleft palate	272 Asian ancestry case-parent trios, 161 Asian ancestry controls, 38 European ancestry cases, 296 European ancestry case-parent trios, 835 European ancestry controls, 40 Latino or African cases, 34 Latino or African case-parent trios, 704 Latino or African controls, 14 case-parent trios.	NA	5p13.2	UGT3A2	rs1287275-?	NR	8E-6		2.0	[1.28-3.12] (GENEVA cohort)	Illumina [6090031] (imputed)	N
860	chr5	36084425	36084426	rs114136102	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	5p13.2	NR	rs114136102-C	0.0397	2E-9		0.072	[0.048-0.096] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
860	chr5	36084425	36084426	rs114136102	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	5p13.2	NR	rs114136102-C	0.0384	3E-8		0.0631	[0.041-0.085] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
860	chr5	36087869	36087870	rs111678372	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	5p13.2		rs111678372-?	NR	1E-8				NR [~ 8900000] (imputed)	N
860	chr5	36118980	36118981	rs11954023	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	5p13.2	LMBRD2	rs11954023-C	NR	3E-8		0.0222508	[0.014-0.03] unit increase	Affymetrix [16832071] (imputed)	N
860	chr5	36137619	36137620	rs267759	19176441	Yang JJ	2009-01-28	JAMA	Genome-wide interrogation of germline genetic variation associated with treatment response in childhood acute lymphoblastic leukemia.	Response to treatment for acute lymphoblastic leukemia	356 European ancestry cases, 53 Black cases, 78 cases	NA	5p13.2	LMBRD2	rs267759-A	NR	7E-6		3.23	[1.52-6.87]	Affymetrix [476796]	N
860	chr5	36143391	36143392	rs267766	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5p13.2	SKP2	rs267766-?	NR	8E-6	(LPE 18:2)	0.15143484	[0.085-0.218] unit decrease	Affymetrix [at least 2500000] (imputed)	N
860	chr5	36147805	36147806	rs10071838	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	5p13.2		rs10071838-?	NR	2E-18				NR [~ 8900000] (imputed)	N
860	chr5	36153846	36153847	rs33674	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	5p13.2	SKP2	rs33674-T	0.057542	1E-10		0.031026162	[0.022-0.04] unit increase	Affymetrix [93095623] (imputed)	N
860	chr5	36156781	36156782	rs3804446	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	5p13.2	SKP2	rs3804446-A	0.874747	2E-19		0.030016784	[0.023-0.037] unit increase	Affymetrix [93095623] (imputed)	N
860	chr5	36156781	36156782	rs3804446	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5p13.2	NR	rs3804446-G	0.145087	6E-23				Affymetrix, Illumina [22063850] (imputed)	N
860	chr5	36156781	36156782	rs3804446	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	5p13.2	NR	rs3804446-G	0.125995	6E-25		0.029228	[0.024-0.035] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
860	chr5	36156781	36156782	rs3804446	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	5p13.2	SKP2	rs3804446-A	0.8753	3E-9		0.03183214	[0.021-0.042] unit increase	Affymetrix [~ 2500000] (imputed)	N
860	chr5	36160667	36160668	rs12656216	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	5p13.2		rs12656216-A	NR	7E-11		0.0148	[0.01-0.019] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
860	chr5	36160667	36160668	rs12656216	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5p13.2	NR	rs12656216-A	0.697724	3E-12				Affymetrix, Illumina [20825802] (imputed)	N
860	chr5	36160667	36160668	rs12656216	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	5p13.2	NR	rs12656216-A	0.78506	2E-12		0.016651	[0.012-0.021] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
860	chr5	36160667	36160668	rs12656216	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	5p13.2	SKP2	rs12656216-A	0.788279	2E-8		0.017835	[0.012-0.024] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
860	chr5	36160667	36160668	rs12656216	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5p13.2		rs12656216-?	NR	7E-19				NR [~ 8900000] (imputed)	N
861	chr5	36178292	36178293	rs42425	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	5p13.2	SKP2	rs42425-T	0.824866	2E-15		0.023363462	[0.018-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
861	chr5	36178292	36178293	rs42425	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	5p13.2	SKP2	rs42425-T	0.824854	6E-14		0.022249928	[0.016-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
861	chr5	36178292	36178293	rs42425	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	5p13.2	SKP2	rs42425-T	0.82481	8E-13		0.0204208	[0.015-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
861	chr5	36178292	36178293	rs42425	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5p13.2	NR	rs42425-T	0.731045	3E-17				Affymetrix, Illumina [24246363] (imputed)	N
861	chr5	36180786	36180787	rs27130	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	5p13.2	NR	rs27130-C	0.826239	1E-17		0.020777	[0.016-0.026] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
861	chr5	36180786	36180787	rs27130	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	5p13.2		rs27130-?	NR	7E-9				NR [~ 8900000] (imputed)	N
861	chr5	36181626	36181627	rs7731023	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	5p13.2	SKP2	rs7731023-A	0.4251	3E-18		0.0166	[0.013-0.02] unit decrease	Affymetrix [18391927] (imputed)	N
861	chr5	36219709	36219710	rs138373837	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Pyruvate levels	114,749 European ancestry individuals	NA	5p13.2		rs138373837-C	0.97637	1E-10		0.0877185	[0.061-0.114] unit decrease	NR [11722792] (imputed)	N
861	chr5	36219709	36219710	rs138373837	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Alanine levels	115,078 European ancestry individuals	NA	5p13.2		rs138373837-C	0.976386	1E-12		0.0958083	[0.069-0.122] unit increase	NR [11722792] (imputed)	N
861	chr5	36257017	36257018	rs16902871	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	5p13.2	RANBP3L	rs16902871-G	0.149	3E-9		1.06	[1.04-1.08]	Affymetrix, Illumina [11800000] (imputed)	N
862	chr5	36309096	36309097	rs16902947	23151678	Takata R	2012-11-15	J Hum Genet	Impact of four loci on serum tamsulosin hydrochloride concentration.	Serum tamsulosin hydrochloride concentration	182 Japanese ancestry individuals	NA	5p13.2	RANBP3L	rs16902947-A	0.01	1E-7		19.48	[12.54-26.42] unit increase	Illumina [481678]	N
862	chr5	36370295	36370296	rs13176547	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	5p13.2	NR	rs13176547-T	NR	1E-6		1.14	[NR]	Illumina [7158791] (imputed)	N
862	chr5	36377679	36377680	rs74541420	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	5p13.2	RANBP3L, RNA5SP181, NADKD1, NADKD1-AS1	rs74541420-T	NR	4E-6	(sleep latency, weekdays)	0.4151	[0.24-0.59] unit increase	Affymetrix [7141204] (imputed)	N
862	chr5	36406386	36406387	rs114965806	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	5p13.2	RNA5SP181, RANBP3L, NADKD1, NADKD1-AS1	rs114965806-T	NR	1E-6	(sleep latency)	0.8268	[0.49-1.16] unit increase	Affymetrix [7141204] (imputed)	N
862	chr5	36406617	36406618	rs34416917	28632202	Witt SH	2017-06-20	Transl Psychiatry	Genome-wide association study of borderline personality disorder reveals genetic overlap with bipolar disorder, major depression and schizophrenia.	Borderline personality disorder	998 European ancestry cases, 1,545 European ancestry controls	NA	5p13.2	intergenic	rs34416917-G	0.8439	7E-6		1.5832804	[1.38-1.78]	Illumina [10736316] (imputed)	N
862	chr5	36436578	36436579	rs114846327	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	5p13.2	NR	rs114846327-?	NR	2E-6				Affymetrix [5486770] (imputed)	N
863	chr5	36449551	36449552	rs2468506	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	5p13.2	RANBP3L, SLC1A3	rs2468506-G	0.1961	3E-9		0.102	[0.067-0.137] unit decrease	Affymetrix [~ 11900000] (imputed)	N
863	chr5	36452824	36452825	rs2468511	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals	5p13.2		rs2468511-C	0.194971	3E-11		0.0753127	[0.053-0.098] decrease	Affymetrix [11014269] (imputed)	N
863	chr5	36452824	36452825	rs2468511	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	5p13.2	RANBP3L, SLC1A3	rs2468511-C	0.1945	5E-10		0.107	[0.072-0.142] unit decrease	Affymetrix [~ 11900000] (imputed)	N
863	chr5	36473236	36473237	rs2937550	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	5p13.2	NR	rs2937550-C	0.537253260908281	9E-6	(IGP72)	0.1807	[0.1-0.26] unit decrease	Illumina [~ 2500000] (imputed)	N
863	chr5	36473236	36473237	rs2937550	21998595	N'Diaye A	2011-10-06	PLoS Genet	Identification, replication, and fine-mapping of Loci associated with adult height in individuals of african ancestry.	Height	20,427 African ancestry individuals	Up to 16,436 African American individuals	5p13.2	intergenic	rs2937550-T	0.20	8E-6		0.045	[0.025-0.065] unit increase	Affymetrix, Illumina [3310998] (imputed)	N
863	chr5	36480683	36480684	rs2468531	27476799	Nielson CM	2016-09-06	J Bone Miner Res	Novel Genetic Variants Associated With Increased Vertebral Volumetric BMD, Reduced Vertebral Fracture Risk, and Increased Expression of SLC1A3 and EPHB2.	Lumbar spine bone mineral density (trabecular)	12,287 European ancestry individuals	2,987 individuals	5p13.2	SLC1A3, RANBP3L	rs2468531-G	0.03	2E-8		0.221	[0.15-0.29] unit increase	Affymetrix, Illumina [up to 37790451] (imputed)	N
863	chr5	36480683	36480684	rs2468531	27476799	Nielson CM	2016-09-06	J Bone Miner Res	Novel Genetic Variants Associated With Increased Vertebral Volumetric BMD, Reduced Vertebral Fracture Risk, and Increased Expression of SLC1A3 and EPHB2.	Lumbar spine bone mineral density (integral)	11,080 European ancestry individuals	NA	5p13.2	SLC1A3, RANBP3L	rs2468531-G	0.03	3E-7		0.192	[0.12-0.27] unit increase	Affymetrix, Illumina [up to 2659730] (imputed)	N
863	chr5	36482829	36482830	rs2468532	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	5p13.2	RNA5SP181	rs2468532-G	0.144612	3E-10		0.020210735	[0.014-0.026] unit increase	Affymetrix [93095623] (imputed)	N
863	chr5	36482829	36482830	rs2468532	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	5p13.2	RNA5SP181	rs2468532-G	0.144611	7E-11		0.020652143	[0.014-0.027] unit increase	Affymetrix [93095623] (imputed)	N
863	chr5	36482829	36482830	rs2468532	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	5p13.2	RNA5SP181	rs2468532-G	0.144608	4E-10		0.019885592	[0.014-0.026] unit increase	Affymetrix [93095623] (imputed)	N
864	chr5	36603383	36603384	rs2731880	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5p13.2		rs2731880-?	NR	2E-9				NR [~ 8900000] (imputed)	N
864	chr5	36630208	36630209	rs75096272	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	5p13.2	NR	rs75096272-A	0.030337	6E-9		0.051986	[0.034-0.07] unit increase	NR [19129689] (imputed)	N
864	chr5	36646193	36646194	rs3776573	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	5p13.2	NR	rs3776573-G	NR	4E-11		0.0194	[0.014-0.025] unit increase	Affymetrix [9000000] (imputed)	N
864	chr5	36646193	36646194	rs3776573	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	5p13.2	NR	rs3776573-G	NR	4E-29		0.0314	[0.026-0.037] unit increase	Affymetrix [9000000] (imputed)	N
864	chr5	36646193	36646194	rs3776573	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	5p13.2		rs3776573-?	NR	3E-10				NR [~ 8900000] (imputed)	N
864	chr5	36646552	36646553	rs3756467	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	5p13.2		rs3756467-T	NR	3E-30		0.0287	[0.024-0.034] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
864	chr5	36646914	36646915	rs1428967	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	5p13.2	SLC1A3	rs1428967-A	0.764755	1E-43		0.00382226	[0.0033-0.0044] unit decrease	Affymetrix [13995440] (imputed)	N
864	chr5	36646914	36646915	rs1428967	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	5p13.2	SLC1A3	rs1428967-G	0.24	9E-15		7.75	z-score increase	Affymetrix [4311822] (imputed)	N
864	chr5	36646945	36646946	rs1428968	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	5p13.2	SLC1A3	rs1428968-C	0.820495	2E-22		0.0234086	[0.019-0.028] unit decrease	NR [13737936] (imputed)	N
864	chr5	36646945	36646946	rs1428968	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	5p13.2		rs1428968-?	NR	2E-22				NR [~ 8900000] (imputed)	N
864	chr5	36646945	36646946	rs1428968	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	5p13.2		rs1428968-?	NR	1E-18		0.0231386	[0.018-0.028] unit decrease	Affymetrix [20259828] (imputed)	N
864	chr5	36646945	36646946	rs1428968	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	5p13.2	SLC1A3	rs1428968-C	0.821341	6E-9	(women)	0.0348354	[0.023-0.047] unit decrease	NR [17166351] (imputed)	N
864	chr5	36646945	36646946	rs1428968	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	5p13.2	SLC1A3	rs1428968-C	0.820581	1E-13		0.0337677	[0.025-0.042] unit decrease	NR [17166351] (imputed)	N
864	chr5	36646945	36646946	rs1428968	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	5p13.2	SLC1A3	rs1428968-C	0.819711	2E-7	(men)	0.0338577	[0.021-0.047] unit decrease	NR [17166351] (imputed)	N
864	chr5	36659737	36659738	rs79104438	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	5p13.2		rs79104438-?	NR	1E-9				NR [~ 8900000] (imputed)	N
864	chr5	36689180	36689181	rs1122900	28449029	Munz M	2017-04-25	Hum Mol Genet	A genome-wide association study identifies nucleotide variants at SIGLEC5 and DEFA1A3 as risk loci for periodontitis.	Aggressive periodontitis	851 European ancestry cases, 6,836 European ancestry controls	223 cases, up to 564 controls	5p13.2	CTD-2353F22.1	rs1122900-A	0.40	8E-7		1.27	[1.16-1.40]	Illumina [at least 5870152] (imputed)	N
864	chr5	36695055	36695056	rs13171357	30219690	Heinzman JT	2018-09-07	J Affect Disord	GWAS and systems biology analysis of depressive symptoms among smokers from the COPDGene cohort.	Depression in smokers	1,622 European ancestry cases, 391 African American cases, 4,954 European ancestry controls, 2,749 African American controls	NA	5p13.2	SLC1A3	rs13171357-G	0.7185	5E-6	(EA)			Illumina [NR] (imputed)	N
865	chr5	36723380	36723381	rs115594123	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	5p13.2	SLC1A3, NIPBL-AS1, NIPBL, C5orf42, LOC105374727, NUP155, WDR70	rs115594123-?		9E-7	(heterogeneous)	0.365	[0.22-0.51] unit increase	Illumina [1492601] (imputed)	N
865	chr5	36723380	36723381	rs115594123	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	5p13.2	SLC1A3, NIPBL-AS1, NIPBL, C5orf42, LOC105374727, NUP155, WDR70	rs115594123-?		5E-6	(additive)	0.321	[0.18-0.46] unit increase	Illumina [1492601] (imputed)	N
865	chr5	36723380	36723381	rs115594123	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	5p13.2	SLC1A3, NIPBL-AS1, NIPBL, C5orf42, LOC105374727, NUP155, WDR70	rs115594123-?		1E-6	(dominant)	0.351	[NR] unit increase	Illumina [1492601] (imputed)	N
865	chr5	36723848	36723848	rs3832338	34518958	Sanders AR	2021-09-13	Arch Sex Behav	Genome-Wide Linkage and Association Study of Childhood Gender Nonconformity in Males.	Childhood gender nonconformity	409 European ancestry concordant male sibling pairs	NA	5p13.2		rs3832338-T	0.897	4E-7		0.084	[0.051-0.117] unit increase	Affymetrix [6030650] (imputed)	N
865	chr5	36786458	36786459	rs6899155	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5p13.2		rs6899155-?	NR	9E-43				NR [~ 8900000] (imputed)	N
865	chr5	36786458	36786459	rs6899155	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	5p13.2	NR	rs6899155-?	NR	3E-7	(female)	0.12529	[0.078-0.173] unit decrease	Affymetrix [7794483] (imputed)	N
865	chr5	36786458	36786459	rs6899155	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	5p13.2	NR	rs6899155-?	NR	2E-7	(male)	0.18455	[0.12-0.25] unit decrease	Affymetrix [7794483] (imputed)	N
865	chr5	36786458	36786459	rs6899155	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	5p13.2	NR	rs6899155-?	NR	1E-12		0.15858	[0.11-0.2] unit decrease	Affymetrix [7794483] (imputed)	N
865	chr5	36792715	36792716	rs34920909	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	5p13.2		rs34920909-C	NR	2E-12		0.0144	[0.01-0.018] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
865	chr5	36803614	36803614	rs34313173	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	5p13.2	intergenic	rs34313173-T	0.5525	3E-50		0.0284	[0.025-0.032] unit increase	Affymetrix [18391927] (imputed)	N
865	chr5	36803614	36803614	rs34313173	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	5p13.2	NR	rs34313173-T	0.55	4E-6		1.0	[-1.0188-3.0188]	Affymetrix [at least 143006] (imputed)	N
865	chr5	36807188	36807189	rs292168	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	5p13.2		rs292168-?	NR	3E-10				NR [~ 8900000] (imputed)	N
865	chr5	36817338	36817339	rs292172	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	5p13.2	NR	rs292172-C	0.432592	8E-13		0.049584	[0.036-0.063] unit decrease	Affymetrix [17914406] (imputed)	N
866	chr5	36900842	36900843	rs293748	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	5p13.2	NIPBL	rs293748-A	0.158	7E-6	(Vigorous activity )	0.03	[NR] %awake time increase	Illumina [899892]	N
867	chr5	36982647	36982648	rs192668	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	5p13.2	NR	rs192668-?	NR	7E-9				Affymetrix [NR]	N
867	chr5	37012944	37012945	rs299397	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	5p13.2	NR	rs299397-G	0.429641	2E-13		0.0514413	[0.038-0.065] unit decrease	Affymetrix [17914406] (imputed)	N
867	chr5	37013146	37013146	rs529922831	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	5p13.2	NIPBL	rs529922831-A	0.8891	6E-6		0.0498	[0.028-0.071] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
867	chr5	37033662	37033662	rs35536025	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	5p13.2	NR	rs35536025-T	0.59	4E-6		1.09	[-0.968-3.148]	Affymetrix [at least 143006] (imputed)	N
867	chr5	37038518	37038518	rs2307857	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	5p13.2	NIPBL	rs2307857-A	0.5674	8E-9		0.0371	[0.025-0.05] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
867	chr5	37043628	37043629	rs11288989	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	5p13.2	NIPBL	rs11288989-CA	0.5638	1E-6		0.0314	[0.019-0.044] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
867	chr5	37046625	37046626	rs301901	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	5p13.2	NIPBL	rs301901-A	0.565	4E-16		0.024	[0.018-0.03] unit increase	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
867	chr5	37075544	37075545	rs300053	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	5p13.2		rs300053-G	NR	3E-36		0.0166	[0.014-0.019] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
867	chr5	37075544	37075545	rs300053	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	5p13.2		rs300053-G	0.545817	3E-11		0.0143016	[0.01-0.019] unit decrease	Illumina [13479295] (imputed)	N
867	chr5	37075544	37075545	rs300053	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	5p13.2	NIPBL, C5orf42	rs300053-?	NR	2E-14		0.023245364	[0.017-0.029] unit decrease	Illumina [27896057] (imputed)	N
867	chr5	37081704	37081705	rs300046	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Meat-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	5p13.2	NIPBL, C5orf42, NUP155, WDR70	rs300046-?	NR	5E-8		0.0134073	[0.0086-0.0182] unit decrease	Affymetrix [25921788] (imputed)	N
868	chr5	37144573	37144574	rs2098713	24795349	Saxena R	2014-05-03	Circ Cardiovasc Genet	Genome-wide association study identifies variants in casein kinase II (CSNK2A2) to be associated with leukocyte telomere length in a Punjabi Sikh diabetic cohort.	Telomere length	842 Punjabi Sikh ancestry type 2 diabetes cases, 774 Punjabi Sikh ancestry controls	1,108 Punjabi Sikh ancestry type 2 diabetes cases, 1,289 Punjabi Sikh ancestry controls, 2,952 European ancestry myocardial infarction cases and healthy controls, 10,033 European ancestry individuals	5p13.2	C5orf42	rs2098713-T	0.47	3E-6	(Punjabi Sikhs)	0.25	[0.15-0.35] unit decrease	Illumina [5904251] (imputed)	N
868	chr5	37153927	37153928	rs200612080	34216518	Osman Y	2021-07-03	Int J Lab Hematol	Functional multigenic variations associated with hodgkin lymphoma.	Hodgkin's lymphoma	56 Greater Middle Eastern ancestry cases,  5 unknown ancestry cases, 36 Greater Middle Eastern ancestry controls	NA	5p13.2	CPLANE1	rs200612080-T	0.377	4E-12		0.03		Illumina [243345]	N
868	chr5	37176864	37176864	rs757720522	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	5p13.2	NR	rs757720522-CT	0.252115	3E-11		0.0532673	[0.038-0.069] unit decrease	Affymetrix [17914406] (imputed)	N
869	chr5	37261694	37261695	rs141949220	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5p13.2		rs141949220-?	NR	5E-9				NR [~ 8900000] (imputed)	N
869	chr5	37284725	37284726	rs150621	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	5p13.2	NR	rs150621-G	0.391838	5E-12		0.0497599	[0.036-0.063] unit decrease	Affymetrix [17914406] (imputed)	N
870	chr5	37421836	37421837	rs34698918	33331911	Freidin MB	2020-12-17	Rheumatology (Oxford)	An association between chronic widespread pain and the gut microbiome.	Chronic widespread musculoskeletal pain	up to 531 European or unknown ancestry cases, up to 2,742 European or unknown ancestry controls	NA	5p13.2	WDR70	rs34698918-A	0.061	8E-7		0.1084	[0.065-0.151] unit increase	NR [4841651] (imputed)	N
870	chr5	37481632	37481633	rs56406522	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Diastolic blood pressure (baseline)	13,137 European ancestry individuals	2,451 European ancestry individuals	5p13.2	NR	rs56406522-A	0.0359	8E-7		1.5845	[0.95-2.21] mmHg increase	Affymetrix, Illumina [NR] (imputed)	N
870	chr5	37483939	37483940	rs184179037	33074286	Kunkle BW	2020-10-19	JAMA Neurol	Novel Alzheimer Disease Risk Loci and Pathways in African American Individuals Using the African Genome Resources Panel: A Meta-analysis.	Alzheimer's disease	2,784 African American cases, 5,222 African American controls	NA	5p13.2	WDR70	rs184179037-?		2E-7	(model 1)	5.0	[2.27-9.18]	Illumina [29610185] (imputed)	N
871	chr5	37488196	37488197	rs12521993	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	5p13.2	NR	rs12521993-C	0.482494	1E-11		0.0491026	[0.035-0.063] unit increase	Affymetrix [17914406] (imputed)	N
871	chr5	37550195	37550196	rs6883388	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	5p13.2	WDR70	rs6883388-A	0.6162	4E-8		0.0359	[0.023-0.049] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
871	chr5	37583637	37583638	rs58969082	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	5p13.2	WDR70	rs58969082-A	0.4571	7E-6		0.0295	[0.017-0.042] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
871	chr5	37588499	37588500	rs1126290	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	5p13.2	NR	rs1126290-G	0.544939	9E-11		0.0444309	[0.031-0.058] unit increase	Affymetrix [17914406] (imputed)	N
872	chr5	37642043	37642044	rs7736605	31991592	Coltell O	2020-01-24	Nutrients	Genome-Wide Association Study for Serum Omega-3 and Omega-6 Polyunsaturated Fatty Acids: Exploratory Analysis of the Sex-Specific Effects and Dietary Modulation in Mediterranean Subjects with Metabolic Syndrome.	Serum omega-3 polyunsaturated fatty acid concentration in metabolic syndrome	426 Mediterranean individuals	NA	5p13.2	WDR70	rs7736605-A	0.059	3E-6		0.775	[0.46-1.09] unit increase	Illumina [621723]	N
872	chr5	37642043	37642044	rs7736605	31991592	Coltell O	2020-01-24	Nutrients	Genome-Wide Association Study for Serum Omega-3 and Omega-6 Polyunsaturated Fatty Acids: Exploratory Analysis of the Sex-Specific Effects and Dietary Modulation in Mediterranean Subjects with Metabolic Syndrome.	Serum docosahexaenoic fatty acid concentration in metabolic syndrome	426 Mediterranean individuals	NA	5p13.2	WDR70	rs7736605-A	0.059	4E-6		0.28	[0.16-0.4] unit increase	Illumina [621723]	N
872	chr5	37704924	37704925	rs12513493	31626034	Thomsen H	2019-10-11	Melanoma Res	Genome-wide study on uveal melanoma patients finds association to DNA repair gene TDP1.	Disease severity in uveal melanoma (TNM stage 3 or 4 vs TNM stage 1 or 2)	330 European ancestry stage 3 or 4 cases, 255 European ancestry stage 1 or 2 cases	NA	5p13.2		rs12513493-T	0.47	2E-6		1.76		Illumina [10258281] (imputed)	N
872	chr5	37742405	37742406	rs2972939	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	5p13.2	WDR70	rs2972939-A	0.8789	9E-6		0.0439	[0.024-0.063] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
873	chr5	37748953	37748954	rs138210978	33594131	Donati G	2021-02-16	Sci Rep	Evidence for specificity of polygenic contributions to attainment in English, maths and science during adolescence.	Academic attainment (maths)	6,017 European ancestry adolescents	NA	5p13.2	NR	rs138210978-G	NR	6E-6		0.094	[0.055-0.133] unit increase	Illumina [6319684] (imputed)	N
873	chr5	37772779	37772780	rs10472291	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	5p13.2	WDR70	rs10472291-A	0.331624285422354	1E-11		0.0038704	[NR] unit increase	Affymetrix [> 30000000] (imputed)	N
873	chr5	37788715	37788716	rs62358931	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	5p13.2		rs62358931-?	NR	1E-9				NR [~ 8900000] (imputed)	N
873	chr5	37811884	37811885	rs80004049	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-17 levels	7,760 Finnish ancestry individuals	NA	5p13.2	NR	rs80004049-G		6E-6		0.5478	[0.31-0.79] SD units decrease	NR [10700000] (imputed)	N
873	chr5	37833418	37833419	rs10941370	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	5p13.2	NR	rs10941370-T	NR	4E-8		1.037	[1.02-1.05]	Affymetrix, Illumina [29235255] (imputed)	N
873	chr5	37840447	37840448	rs11747340	31320639	Hillary RF	2019-07-18	Nat Commun	Genome and epigenome wide studies of neurological protein biomarkers in the Lothian Birth Cohort 1936.	Neurological blood protein biomarker levels	750 European ancestry individuals	NA	5p13.2	GDNF-AS1	rs11747340-A	0.1011	2E-14	(GDNF)	0.64381	[0.49-0.8] unit decrease	Illumina [8683751] (imputed)	N
873	chr5	37860073	37860074	rs2910756	26824906	Rankinen T	2016-01-29	PLoS One	No Evidence of a Common DNA Variant Profile Specific to World Class Endurance Athletes.	World class endurance athleticism	60 Japanese ancestry world-class cases, 116 Japanese ancestry controls	at least 140 Sub-Saharan African ancestry cases, at least 275 Sub-Saharan African ancestry controls, at least 606 European ancestry cases, at least 978 European ancestry controls,  at least 688 Japanese ancestry controls, 78 cases, 101 controls.	5p13.2	GDNF-AS1	rs2910756-?	0.63	8E-6	(Japanese)	3.57	[2.00-6.25]	Illumina [541179]	N
873	chr5	37866203	37866204	rs150206252	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	5p13.2	GDNF	rs150206252-T	0.0103897902045823	5E-6	(F_Sutterellaceae_HB)	1.82117	[1.04-2.6] unit decrease	Illumina [7711310] (imputed)	N
874	chr5	37881413	37881414	rs12521260	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls, 2,149 African ancestry cases, 6,055 African ancestry controls, 1,239 Japanese ancestry cases, 3,976 Japanese ancestry controls, 606 Latino cases, 792 Latino controls	NA	5p13.2	GDNF, EGFLAM	rs12521260-T	0.28	3E-6	(Latino)	1.52	[1.27-1.81]	Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
874	chr5	37915719	37915720	rs4574573	30576415	Gilly A	2019-08-01	Bioinformatics	Very low-depth whole-genome sequencing in complex trait association studies.	Lipid traits	1,225 Mylopotamos (founder/genetic isolate) individuals	NA	5p13.2	CTD-2194L12.2	rs4574573-?	NR	1E-7	(total cholesterol)	0.25	[0.15-0.35] unit decrease	Illumina [14948665] (imputed)	N
874	chr5	37959827	37959827	rs546776284	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		AC034226.1	rs546776284-?	NR	1E-8	(female)	1.73756	[NR] unit decrease	Affymetrix [NR] (imputed)	N
875	chr5	38044453	38044454	rs60486174	32690583	Cheng B	2020-07-20	G3 (Bethesda)	Genome-Wide Association Analysis Identified ANXA1 Associated with Shoulder Impingement Syndrome in UK Biobank Samples.	Shoulder impingement syndrome	7,252 European ancestry individuals	NA	5p13.2		rs60486174-T	NR	2E-6		0.824263	[0.74-0.90] unit increase	Affymetrix [825927] (imputed)	N
875	chr5	38050884	38050884	rs140479110	33239696	Steinthorsdottir V	2020-11-25	Nat Commun	Genetic predisposition to hypertension is associated with preeclampsia in European and Central Asian women.	Preeclampsia (maternal genotype effect)	2,296 Central Asian ancestry cases, 2,059 Central Asian ancestry controls, 7,219 European ancestry cases, 155,660 European ancestry controls	592 Kazakh ancestry cases, 361 Kazakh ancestry controls, 2,043 European ancestry cases, 6,018 European ancestry controls	5p13.2		rs140479110-GGA	0.32	2E-7		1.1	[1.06-1.15]	Illumina [11796347] (imputed)	N
875	chr5	38051592	38051593	rs270545	20125088	Shi J	2010-02-02	Mol Psychiatry	Genome-wide association study of recurrent early-onset major depressive disorder.	Major depressive disorder	1,020 European ancestry cases, 1,636 European ancestry controls	NA	5p13.2	GDNF	rs270545-G	0.69	1E-6		1.37		Affymetrix [671424]	N
875	chr5	38119461	38119462	rs41421845	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	5p13.2	NR	rs41421845-?	NR	5E-39				Affymetrix [NR]	N
876	chr5	38147485	38147486	rs6891592	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5p13.2	NR	rs6891592-T	0.01568	4E-9	(PRDX5)	0.4855	NR unit decrease	Illumina [1671387] (imputed)	N
876	chr5	38205023	38205024	rs181764204	33898419	Mukhopadhyay N	2021-04-09	Front Cell Dev Biol	Genome-Wide Association Study of Non-syndromic Orofacial Clefts in a Multiethnic Sample of Families and Controls Identifies Novel Regions.	Nonsyndromic cleft lip with or without cleft palate	154 African ancestry cases, 274 African ancestry controls, 445 Asian ancestry cases, 1,246 Asian ancestry controls, 569 European ancestry cases, 2,704 European ancestry controls, 1,050 Central and South American cases, 2,988 Central and South American controls, 3 cases, 14 controls	NA	5p13.2	NR	rs181764204-T		3E-7		0.54	[0.34-0.74] unit increase	Illumina [NR] (imputed)	N
876	chr5	38248300	38248301	rs1560124	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	5p13.2	Intergenic	rs1560124-G	0.5374	2E-10		0.0144	[0.0099-0.0189] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
876	chr5	38251004	38251005	rs6867736	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	5p13.2	Intergenic	rs6867736-A	0.3206	3E-11	(MTAG)	0.0117	[0.0082-0.0152] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
876	chr5	38263126	38263127	rs1582919	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	5p13.2	Intergenic	rs1582919-A	0.3867	6E-9	(MTAG)	0.0078	[0.0053-0.0103] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
878	chr5	38444799	38444800	rs111594438	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque score in type 2 diabetes	691 African American individuals	205 African American individuals	5p13.1	EGFLAM	rs111594438-?	NR	6E-6		0.748	[0.32-1.18] unit increase	Illumina [at least 13000000] (imputed)	N
878	chr5	38452893	38452894	rs7715172	22760553	Adkins DE	2012-07-03	Transl Psychiatry	Genome-wide pharmacogenomic study of citalopram-induced side effects in STAR*D.	Response to citalopram treatment	1,392 European ancestry depression cases, 264 African American depression cases, 106 depression cases	NA	5p13.1	EGFLAM	rs7715172-G	0.071	3E-6	(EA + AA - GSE)			Affymetrix [421789]	N
878	chr5	38464243	38464244	rs80164876	33106475	Li QS	2020-10-26	Transl Psychiatry	Genome-wide association studies of antidepressant class response and treatment-resistant depression.	Response to SSRI (responders vs non-responders)	13,130 European ancestry responders, 6,610 European ancestry non-responders	NA	5p13.1	NR	rs80164876-G	NR	8E-6		1.5482	NR	Illumina [at least 560000] (imputed)	N
878	chr5	38464243	38464244	rs80164876	27622933	Li QS	2016-09-13	Transl Psychiatry	Analysis of 23andMe antidepressant efficacy survey data: implication of circadian rhythm and neuroplasticity in bupropion response.	Response to selective serotonin reuptake inhibitors in depression	6,348 European ancestry responder cases, 3,340 European ancestry non-responder cases	NA	5p13.1	EGFLAM	rs80164876-?		4E-7		2.09	[1.551-2.815]	Illumina [~ 12000000] (imputed)	N
878	chr5	38527307	38527308	rs3729734	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Pursuit maintenance gain	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	5p13.1	LIFR	rs3729734-A	0.003049	4E-7	(African)			Illumina [4404269] (imputed)	N
879	chr5	38585054	38585055	rs113077359	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	5p13.1		rs113077359-A	NR	2E-6		4.0154	[2.39-5.64] unit increase	Illumina [NR] (imputed)	N
879	chr5	38602862	38602863	rs3099122	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	5p13.1	LIFR	rs3099122-C	0.5953125	2E-6	(LIFR, 5837_49_3)	0.11922808	[0.07-0.168] unit decrease	Illumina [> 1000000] (imputed)	N
879	chr5	38616886	38616887	rs172906	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	5p13.1	NR	rs172906-C	0.5567	3E-10		0.012214	[0.0084-0.016] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
879	chr5	38655252	38655253	rs2914244	29064910	Kure Fischer E	2017-10-23	Int Clin Psychopharmacol	A molecular pathway analysis informs the genetic risk for arrhythmias during antipsychotic treatment.	Antipsychotic drug-induced QTc interval change in schizophrenia	434 European ancestry individuals, 202 African ancestry individuals, 25 individuals	NA	5p13.1	NR	rs2914244-T	NR	3E-6		7650.0	unit decrease	Affymetrix, Perlegen [1785543] (imputed)	N
879	chr5	38663573	38663574	rs12152761	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid vs negative)	9,913 European ancestry cases, 85,072 European ancestry controls, 2,553 Hispanic or Latin American cases, 13,086 Hispanic or Latin American controls, 506 Black or African American cases, 3,110 Black or African American controls	NA	5p13.1		rs12152761-?	NR	9E-6		0.28717732	[0.16-0.41] unit increase	Illumina [9939936] (imputed)	N
880	chr5	38683297	38683298	rs150521225	33602968	Skuladottir AT	2021-02-18	Sci Rep	A meta-analysis uncovers the first sequence variant conferring risk of Bell's palsy.	Bell's palsy	4,714 European ancestry cases, 1,011,520 European ancestry controls	NA	5p13.1	intergenic	rs150521225-C	0.001	2E-6		3.13961	NR	Affymetrix, Illumina [30341632] (imputed)	N
880	chr5	38707870	38707871	rs4869589	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	5p13.1		rs4869589-G	NR	2E-9		0.0149	[0.01-0.02] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
880	chr5	38707870	38707871	rs4869589	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 799 African American cases, 157,769 European ancestry controls, 14,353 African American controls	NA	5p13.1	OSMR-AS1	rs4869589-T	NR	8E-10		1.07	[1.05-1.10]	Affymetrix, Illumina [12923718] (imputed)	N
880	chr5	38707870	38707871	rs4869589	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 157,769 European ancestry controls	NA	5p13.1	NR	rs4869589-?	NR	7E-11		0.0765	[0.054-0.099] unit increase	Affymetrix, Illumina [12923718] (imputed)	N
880	chr5	38708553	38708554	rs16867574	31676865	Klarin D	2019-11-01	Nat Genet	Genome-wide association analysis of venous thromboembolism identifies new risk loci and genetic overlap with arterial vascular disease.	Venous thromboembolism	23,151 European ancestry cases, 553,439 European ancestry controls, 2,261 African American cases, 49,400 African American controls, 654 Hispanic cases, 21,214 Hispanic controls	17,672 cases, 167,295 controls	5p13.1	RP11-122C5.1	rs16867574-C	0.3175	3E-10		1.064388	[1.04-1.09]	Affymetrix [up to 34000000] (imputed)	N
880	chr5	38728217	38728218	rs4337869	29064910	Kure Fischer E	2017-10-23	Int Clin Psychopharmacol	A molecular pathway analysis informs the genetic risk for arrhythmias during antipsychotic treatment.	Antipsychotic drug-induced QTc interval change in schizophrenia	434 European ancestry individuals, 202 African ancestry individuals, 25 individuals	NA	5p13.1	NR	rs4337869-A	NR	4E-6		4990.0	unit decrease	Affymetrix, Perlegen [1785543] (imputed)	N
880	chr5	38735283	38735284	rs17456364	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	5p13.1	NR	rs17456364-?	NR	5E-6				Affymetrix [NR]	N
880	chr5	38736141	38736142	rs4293945	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	5p13.1	CTD-2127H9.1	rs4293945-T	NR	5E-8		0.0157631	[0.01-0.021] unit decrease	Affymetrix [319769] (imputed)	N
880	chr5	38736141	38736142	rs4293945	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	5p13.1	CTD-2127H9.1	rs4293945-T	NR	4E-8		0.0158931	[0.01-0.022] unit decrease	Affymetrix [319769] (imputed)	N
880	chr5	38749735	38749736	rs4266430	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	5p13.1	NR	rs4266430-T	0.48770500000000006	2E-9		0.00493986	[0.0033-0.0066] unit increase	Affymetrix [16582909] (imputed)	N
880	chr5	38755334	38755335	rs79135401	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	5p13.1	intergenic	rs79135401-G	NR	2E-7				Illumina [up to 11995908] (imputed)	N
880	chr5	38755334	38755335	rs79135401	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	5p13.1	intergenic	rs79135401-G	NR	2E-6	(AA)			Illumina [up to 11995908] (imputed)	N
880	chr5	38756716	38756717	rs11743151	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Nevus count or cutaneous melanoma	36,760 European ancestry cutaneous melanoma cases, 375,188 European ancestry controls, 12,930 European ancestry individuals, 52,847 individuals	NA	5p13.1	RP11-122C5.3	rs11743151-C	0.660594	2E-8				Affymetrix, Illumina [NR] (imputed)	N
880	chr5	38762287	38762288	rs10045504	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	5p13.1	CTD-2127H9.1, RP11-122C5.2, OSMR, LIFR-AS1	rs10045504-C	NR	3E-6	(number of awakenings after sleep onset, weekdays)	0.1114	[0.064-0.158] unit increase	Affymetrix [7141204] (imputed)	N
880	chr5	38767811	38767812	rs10038470	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	5p13.1	CTD-2127H9.1, RP11-122C5.2, OSMR, LIFR-AS1	rs10038470-G	NR	4E-6	(sleep efficiency)	1.964	[1.13-2.8] unit increase	Affymetrix [7141204] (imputed)	N
880	chr5	38777382	38777383	rs10941407	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	5p13.1	CTD-2127H9.1	rs10941407-A	0.485699	7E-11		0.014568264	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
880	chr5	38777382	38777383	rs10941407	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	5p13.1	CTD-2127H9.1	rs10941407-A	0.485718	5E-10		0.013914117	[0.0095-0.0183] unit decrease	Affymetrix [93095623] (imputed)	N
880	chr5	38778513	38778514	rs9687972	27490719	Bacelis J	2016-08-04	PLoS One	Literature-Informed Analysis of a Genome-Wide Association Study of Gestational Age in Norwegian Women and Children Suggests Involvement of Inflammatory Pathways.	Gestational age at birth (child effect)	1,109 Norwegian ancestry children	NA	5p13.1	NR	rs9687972-C		9E-6				NR [525577]	N
880	chr5	38778849	38778850	rs13160548	26631737	Teumer A	2015-12-02	Diabetes	Genome-wide Association Studies Identify Genetic Loci Associated With Albuminuria in Diabetes.	Microalbuminuria	up to 54,116 European ancestry cases	NA	5p13.1	OSMR-AS1, LINC01265, OSMR	rs13160548-T	0.69	8E-6		0.1	[0.055-0.145] unit decrease	Affymetrix, Illumina [2191945] (imputed)	N
880	chr5	38794395	38794396	rs62353354	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	5p13.1	CTD-2127H9.1	rs62353354-C	NR	1E-9		0.0189233	[0.013-0.025] unit decrease	Affymetrix [319769] (imputed)	N
880	chr5	38794395	38794396	rs62353354	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	5p13.1	CTD-2127H9.1	rs62353354-C	NR	9E-10		0.0191106	[0.013-0.025] unit decrease	Affymetrix [319769] (imputed)	N
880	chr5	38794395	38794396	rs62353354	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	5p13.1	NR	rs62353354-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
880	chr5	38794395	38794396	rs62353354	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	5p13.1		rs62353354-?	NR	8E-9				NR [~ 8900000] (imputed)	N
880	chr5	38795198	38795199	rs17457629	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	5p13.1	NR	rs17457629-A	0.7248	6E-9		0.0118	[0.0079-0.0157] unit increase	NR [~ 27400000] (imputed)	N
880	chr5	38795198	38795199	rs17457629	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	5p13.1	NR	rs17457629-A	0.7248	7E-6		0.0091	[0.0052-0.013] unit increase	NR [~ 27400000] (imputed)	N
881	chr5	38799792	38799793	rs1864511	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	5p13.1	CTD-2127H9.1	rs1864511-T	NR	2E-8		0.0179674	[0.012-0.024] unit decrease	Affymetrix [321169] (imputed)	N
881	chr5	38805921	38805922	rs12654381	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Prevotella)	1,068 Japanese ancestry individuals	NA	5p13.1	CTD-2127H9.1	rs12654381-G	0.09	6E-6	(female)	2.21	[1.27-3.15] unit increase	Illumina [6380737] (imputed)	N
881	chr5	38805921	38805922	rs12654381	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Bacteroides)	1,068 Japanese ancestry individuals	NA	5p13.1	CTD-2127H9.1	rs12654381-G	0.09	8E-6	(female)	0.0834	[0.047-0.12] unit decrease	Illumina [6380737] (imputed)	N
881	chr5	38814710	38814711	rs185111230	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	5p13.1	CTD-2127H9.1	rs185111230-T	0.0041	5E-9		0.1663431	[0.11-0.22] unit increase	Affymetrix [~ 2500000] (imputed)	N
881	chr5	38831130	38831131	rs34548439	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal adenoma (advanced)	636 Austrian ancestry cases, 4,294 European ancestry controls	NA	5p13.1	Intergenic	rs34548439-?		9E-7		1.411	[NR]	Affymetrix [492217] (imputed)	N
881	chr5	38842268	38842269	rs66826727	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	5p13.1	OSMR	rs66826727-A		1E-9		0.02	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
881	chr5	38858652	38858653	rs62354706	31597446	Veluchamy A	2019-10-10	Arterioscler Thromb Vasc Biol	Novel Genetic Locus Influencing Retinal Venular Tortuosity Is Also Associated With Risk of Coronary Artery Disease.	Central retinal vein equivalent	3,094 European ancestry individuals	NA	5p13.1	OSMR	rs62354706-T	NR	7E-7		1.19	[0.72-1.66] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
881	chr5	38867731	38867732	rs395157	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Ulcerative colitis	12,366 European and unknown ancestry cases, 33,609 European and unknown ancestry controls	NA	5p13.1	OSMR	rs395157-?		4E-6				Illumina [9578670] (imputed)	N
881	chr5	38867731	38867732	rs395157	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	5p13.1	OSMR	rs395157-?		5E-10				Illumina [9725440] (imputed)	N
881	chr5	38867731	38867732	rs395157	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	5p13.1	OSMR	rs395157-?		2E-7				Illumina [9560910] (imputed)	N
881	chr5	38867731	38867732	rs395157	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	5p13.1	OSMR	rs395157-?	NR	8E-15	(subset analysis)			Illumina [130052]	N
881	chr5	38867731	38867732	rs395157	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	5p13.1	OSMR, FYB, LIFR	rs395157-A	0.4842	9E-12	(EA)	1.0890996	[1.06-1.11]	Affymetrix, Illumina [~ 9000000] (imputed)	N
881	chr5	38867731	38867732	rs395157	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	5p13.1	OSMR, FYB, LIFR	rs395157-A	0.4842	2E-20	(EA)	1.0956664	[1.08-1.12]	Affymetrix, Illumina [~ 9000000] (imputed)	N
881	chr5	38867731	38867732	rs395157	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	5p13.1	OSMR, FYB, LIFR	rs395157-A	0.4842	2E-16	(EA)	1.1031193	[1.08-1.13]	Affymetrix, Illumina [~ 9000000] (imputed)	N
881	chr5	38869034	38869035	rs357282	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	5p13.1	OSMR	rs357282-T	0.130526	3E-14		0.02508267	[0.019-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
881	chr5	38869034	38869035	rs357282	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	5p13.1	OSMR	rs357282-T	0.130513	2E-14		0.025224201	[0.019-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
881	chr5	38869034	38869035	rs357282	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5p13.1	NR	rs357282-T	0.129547	2E-12				Affymetrix, Illumina [24653286] (imputed)	N
881	chr5	38869034	38869035	rs357282	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5p13.1	NR	rs357282-T	0.1295	1E-11				Affymetrix, Illumina [24558453] (imputed)	N
881	chr5	38869034	38869035	rs357282	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	5p13.1	NR	rs357282-T	0.130492	3E-13		0.020021	[0.015-0.025] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
881	chr5	38869034	38869035	rs357282	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	5p13.1		rs357282-?	NR	1E-16				NR [~ 8900000] (imputed)	N
881	chr5	38870907	38870908	rs74378198	25897834	Biernacka JM	2015-04-21	Transl Psychiatry	The International SSRI Pharmacogenomics Consortium (ISPC): a genome-wide association study of antidepressant treatment response.	Response to serotonin reuptake inhibitors in major depressive disorder	298 European ancestry cases, 567 Asian ancestry cases, 1529 European and other ancestry cases	NA	5p13.1	OSMR	rs74378198-?	NR	4E-6	(% Change in score)	0.43	[NR] unit decrease	Illumina [~ 7000000] (imputed)	N
881	chr5	38873617	38873618	rs375155	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	5p13.1		rs375155-T	NR	2E-10		0.0165	[0.011-0.022] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
881	chr5	38877563	38877564	rs357269	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	5p13.1		rs357269-A	NR	6E-14		0.0205	[0.015-0.026] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
881	chr5	38881352	38881353	rs2278326	29064910	Kure Fischer E	2017-10-23	Int Clin Psychopharmacol	A molecular pathway analysis informs the genetic risk for arrhythmias during antipsychotic treatment.	Antipsychotic drug-induced QTc interval change in schizophrenia	434 European ancestry individuals, 202 African ancestry individuals, 25 individuals	NA	5p13.1	NR	rs2278326-C	NR	3E-6		6610.0	unit decrease	Affymetrix, Perlegen [1785543] (imputed)	N
881	chr5	38884070	38884071	rs34675408	30945699	Wei J	2019-04-04	Med Sci Monit	Genome-Wide Association Study Identifies a Genetic Prediction Model for Postoperative Survival in Patients with Hepatocellular Carcinoma.	Postoperative survival time in hepatocellular carcinoma	367 East Asian ancestry cases	758 East Asian ancestry cases	5p13.1	OSMR	rs34675408-?	NR	1E-32				Affymetrix [630573]	N
881	chr5	38884070	38884071	rs34675408	30945673	Prasad G	2019-03-01	J Genet	Genomewide association study for C-reactive protein in Indians replicates known associations of common variants.	Postoperative survival time in hepatocellular carcinoma	367 East Asian ancestry individuals	758 East Asian ancestry individuals	5p13.1	OSMR	rs34675408-?	NR	1E-32				Affymetrix [630573]	N
881	chr5	38907421	38907422	rs357253	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5p13.1	OSMR	rs357253-T	0.232	8E-13	(Oncostatin-M-specific receptor subunit beta, OSMR.10892.8.3)	0.21	[0.15-0.27] unit increase	Affymetrix [10572788] (imputed)	N
881	chr5	38917668	38917669	rs34324145	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Reticulocyte count	437,291 European ancestry individuals	NA	5p13.1		rs34324145-?	NR	3E-11		0.0970302	[0.068-0.126] unit increase	NR [9800000] (imputed)	N
881	chr5	38917668	38917669	rs34324145	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Immature fraction of reticulocytes	438,154 European ancestry individuals	NA	5p13.1		rs34324145-?	NR	4E-12		0.106514	[0.077-0.136] unit increase	NR [9800000] (imputed)	N
881	chr5	38917668	38917669	rs34324145	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	High light scatter reticulocyte count	437,723 European ancestry individuals	NA	5p13.1		rs34324145-?	NR	7E-15		0.114978	[0.086-0.144] unit increase	NR [9800000] (imputed)	N
881	chr5	38917668	38917669	rs34324145	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	5p13.1	OSMR	rs34324145-A	0.00456900000000005	8E-10		0.101683214	[0.069-0.134] unit increase	Affymetrix [93095623] (imputed)	N
881	chr5	38917668	38917669	rs34324145	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	5p13.1	OSMR	rs34324145-A	0.00456500000000004	7E-14		0.12432451	[0.092-0.157] unit increase	Affymetrix [93095623] (imputed)	N
881	chr5	38917668	38917669	rs34324145	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	5p13.1	OSMR	rs34324145-A	0.00456800000000002	2E-14		0.12650405	[0.094-0.159] unit increase	Affymetrix [93095623] (imputed)	N
881	chr5	38917668	38917669	rs34324145	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	5p13.1	OSMR	rs34324145-A	0.00456900000000005	8E-12		0.11256633	[0.08-0.145] unit increase	Affymetrix [93095623] (imputed)	N
881	chr5	38922825	38922826	rs6864478	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	5p13.1	OSMR	rs6864478-G	0.40841	9E-15		0.017535495	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
882	chr5	38955795	38955796	rs2043112	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	5p13.1	RICTOR, OSMR	rs2043112-A	0.389	8E-7	(Urinary free epinephrine )	0.04	[NR] nmol/d increase	Illumina [899892]	N
882	chr5	38985014	38985015	rs12654031	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	5p13.1	RICTOR	rs12654031-A	0.407332	3E-16		0.018646605	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
882	chr5	38985268	38985269	rs1239259	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	5p13.1	NR	rs1239259-A	0.370084	1E-13		0.014314	[0.011-0.018] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
882	chr5	38999144	38999145	rs6867276	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	5p13.1	RICTOR	rs6867276-A	0.888	3E-6		0.076	NR unit increase	Illumina [NR] (imputed)	N
882	chr5	39002515	39002519	rs200683443	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	5p13.1	RICTOR	rs200683443-T	0.377684	8E-15		0.019118017	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
882	chr5	39002515	39002515	rs769160064	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	5p13.1	NR	rs769160064-D	0.379382	2E-16		0.018485	[0.014-0.023] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
882	chr5	39058355	39058356	rs13160161	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	5p13.1	RICTOR	rs13160161-A	0.382	2E-6	(Urinary free epinephrine )	0.04	[NR] nmol/d increase	Illumina [899892]	N
883	chr5	39072615	39072616	rs1423688	29064910	Kure Fischer E	2017-10-23	Int Clin Psychopharmacol	A molecular pathway analysis informs the genetic risk for arrhythmias during antipsychotic treatment.	Antipsychotic drug-induced QTc interval change in schizophrenia	434 European ancestry individuals, 202 African ancestry individuals, 25 individuals	NA	5p13.1	NR	rs1423688-G	NR	3E-6		6110.0	unit decrease	Affymetrix, Perlegen [1785543] (imputed)	N
883	chr5	39074695	39074696	rs6869095	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5p13.1	NR	rs6869095-T	0.454712	2E-13				Affymetrix, Illumina [24332387] (imputed)	N
883	chr5	39080693	39080694	rs10941418	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	5p13.1		rs10941418-G	0.441278	6E-12		0.015631415	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
883	chr5	39080693	39080694	rs10941418	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	5p13.1		rs10941418-G	0.441254	2E-9		0.013540588	[0.0091-0.018] unit decrease	Affymetrix [93095623] (imputed)	N
883	chr5	39098511	39098512	rs1025326	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	5p13.1		rs1025326-A	NR	9E-9		0.0142	[0.0093-0.0191] unit increase	Affymetrix, Illumina [20529698] (imputed)	N
883	chr5	39112872	39112873	rs79370104	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	5p13.1	NR	rs79370104-?	NR	7E-6		0.373149	[0.21-0.54] unit increase	NR [13958389] (imputed)	N
883	chr5	39126440	39126441	rs76502274	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	5p13.1	FYB	rs76502274-A	0.28725	2E-13		0.018280365	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
883	chr5	39174302	39174303	rs12652455	31830031	Chernus JM	2019-12-12	PLoS Genet	A candidate gene analysis and GWAS for genes associated with maternal nondisjunction of chromosome 21.	Maternal nondisjunction of chromosome 21 (mothers vs fathers)	705 mothers, 645 fathers	NA	5p13.1	NR	rs12652455-?		6E-6		2.51		Illumina [NR] (imputed)	N
884	chr5	39203597	39203597	rs201203751	27622933	Li QS	2016-09-13	Transl Psychiatry	Analysis of 23andMe antidepressant efficacy survey data: implication of circadian rhythm and neuroplasticity in bupropion response.	Non-response to bupropion and depression	1,861 European ancestry non-responder cases, 192,070 European ancestry healthy controls	NA	5p13.1	FYB	rs201203751-?		5E-7		4.009	[2.537-6.336]	Illumina [~ 12000000] (imputed)	N
884	chr5	39207416	39207417	rs7705606	33075057	Li X	2020-10-19	PLoS Genet	Automated feature extraction from population wearable device data identified novel loci associated with sleep and circadian rhythms.	Sleep (1/2-day periodicity)	90,515 individuals	NA	5p13.1	FYB1	rs7705606-T	NR	2E-10		0.523	[0.36-0.69] unit increase	NR [11024754] (imputed)	N
884	chr5	39230218	39230219	rs76400352	30219690	Heinzman JT	2018-09-07	J Affect Disord	GWAS and systems biology analysis of depressive symptoms among smokers from the COPDGene cohort.	Depression in smokers	1,622 European ancestry cases, 391 African American cases, 4,954 European ancestry controls, 2,749 African American controls	NA	5p13.1	FYB	rs76400352-G	0.9684	4E-6	(AA)			Illumina [NR] (imputed)	N
884	chr5	39270794	39270795	rs150317881	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	5p13.1	NR	rs150317881-T	0.013625	1E-11		0.05497	[0.039-0.071] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
884	chr5	39270794	39270795	rs150317881	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	5p13.1		rs150317881-?	NR	8E-9				NR [~ 8900000] (imputed)	N
884	chr5	39270794	39270795	rs150317881	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	5p13.1		rs150317881-?	NR	2E-10				NR [~ 8900000] (imputed)	N
884	chr5	39309988	39309989	rs76274306	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Ischemic stroke (cardioembolic)	174 Indian ancestry cases, 2,154 Indian ancestry controls	NA	5p13.1		rs76274306-?	NR	7E-6		1.1638296	[1.08943032977194-1.24330961638448]	Illumina [up to 7827597] (imputed)	N
885	chr5	39327887	39327888	rs62358361	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5p13.1	C9	rs62358361-T	0.01	3E-38	(CREB-binding protein, CREBBP.13614.6.3)	1.55	[1.31-1.79] unit increase	Affymetrix [10572788] (imputed)	N
885	chr5	39327887	39327888	rs62358361	26691988	Fritsche LG	2015-12-21	Nat Genet	A large genome-wide association study of age-related macular degeneration highlights contributions of rare and common variants.	Advanced age-related macular degeneration	16,144 European ancestry cases, 17,832 European ancestry controls	473 Asian ancestry cases, 1,099 Asian ancestry controls, 52 African ancestry cases, 361 African ancestry cases, 254 other non-European ancestry cases, 694 other non-European ancestry controls	5p13.1	C9	rs62358361-?	NR	1E-14	(EA)	1.8		Illumina [12023830] (imputed)	N
885	chr5	39343162	39343163	rs4957473	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	5p13.1	NR	rs4957473-G	NR	1E-23		0.0245	[0.02-0.029] unit increase	Affymetrix [9000000] (imputed)	N
885	chr5	39343162	39343163	rs4957473	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	5p13.1	NR	rs4957473-G	NR	5E-24		0.0247	[0.02-0.029] unit decrease	Affymetrix [9000000] (imputed)	N
885	chr5	39345305	39345306	rs62358364	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5p13.1	C9	rs62358364-T	0.009	9E-27	(Complement component C9, C9.3060.43.2)	1.34	[1.09-1.59] unit decrease	Affymetrix [10572788] (imputed)	N
885	chr5	39350362	39350363	rs835209	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	5p13.1	C9	rs835209-C	0.95828125	7E-10	(C9, 13722_105_3)	0.37104133	[0.25-0.49] unit decrease	Illumina [> 1000000] (imputed)	N
885	chr5	39354068	39354069	rs265721	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	5p13.1	C9	rs265721-G	0.95875	6E-10	(C9, 3060_43_2)	0.37535793	[0.26-0.49] unit decrease	Illumina [> 1000000] (imputed)	N
885	chr5	39354068	39354069	rs265721	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	5p13.1	C9	rs265721-G	0.95875	5E-9	(C9, 2292_17_4)	0.35430953	[0.24-0.47] unit decrease	Illumina [> 1000000] (imputed)	N
885	chr5	39359402	39359403	rs835219	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CREBBP	5,344 Icelandic ancestry individuals	NA	5p13.1		rs835219-C	0.08557	2E-19		0.268904	[0.21-0.33] unit increase	Illumina [7506463] (imputed)	N
885	chr5	39367738	39367739	rs700236	28452372	Gorski M	2017-04-28	Sci Rep	1000 Genomes-based meta-analysis identifies 10 novel loci for kidney function.	Glomerular filtration rate (creatinine)	110,517 European ancestry individuals		5p13.1	DAB2	rs700236-A	NR	2E-18		0.0084	[0.0066-0.0102] unit increase	Affymetrix, Illumina [up to 10971307] (imputed)	N
885	chr5	39373688	39373689	rs700239	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C9	5,367 Icelandic ancestry individuals	NA	5p13.1		rs700239-C	0.09406	4E-9		0.1873	[0.13-0.25] unit increase	Illumina [7506463] (imputed)	N
885	chr5	39373688	39373689	rs700239	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C9	5,366 Icelandic ancestry individuals	NA	5p13.1		rs700239-C	0.09406	3E-8		0.175684	[0.11-0.24] unit increase	Illumina [7506463] (imputed)	N
885	chr5	39373688	39373689	rs700239	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C9	5,364 Icelandic ancestry individuals	NA	5p13.1		rs700239-C	0.09406	1E-8		0.180411	[0.12-0.24] unit increase	Illumina [7506463] (imputed)	N
885	chr5	39373688	39373689	rs700239	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Non-albumin protein levels	98,538 Japanese ancestry individuals	NA	5p13.1	DAB2	rs700239-?	NR	2E-11		0.03056	[0.022-0.039] unit increase novel	Illumina [6108953] (imputed)	N
885	chr5	39373688	39373689	rs700239	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Albumin-globulin ratio	98,626 Japanese ancestry individuals	NA	5p13.1	DAB2	rs700239-?	NR	4E-10		0.02846	[0.02-0.037] unit decrease novel	Illumina [6108953] (imputed)	N
885	chr5	39378114	39378115	rs1362800	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	5p13.1	DAB2	rs1362800-T	0.3832	7E-65		0.0049	[0.0043-0.0055] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
885	chr5	39378114	39378115	rs1362800	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Chronic kidney disease	64,164 European and unknown ancestry cases, 561,055 European and unknown ancestry controls	NA	5p13.1	DAB2	rs1362800-T	0.38	5E-11		1.0571	[1.0399-1.0747]	Affymetrix, Illumina [9585923] (imputed)	N
885	chr5	39382260	39382261	rs2542710	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	5p13.1		rs2542710-?	NR	7E-46		0.0286593	[0.025-0.033] unit increase	Affymetrix [20259828] (imputed)	N
885	chr5	39382260	39382261	rs2542710	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	5p13.1	DAB2	rs2542710-A	0.516315	1E-7	(women)	0.0228782	[0.014-0.032] unit increase	NR [17166351] (imputed)	N
885	chr5	39382260	39382261	rs2542710	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	5p13.1	DAB2	rs2542710-A	0.515163	3E-14		0.0244417	[0.018-0.031] unit increase	NR [17166351] (imputed)	N
885	chr5	39382260	39382261	rs2542710	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	5p13.1	DAB2	rs2542710-A	0.513843	4E-9	(men)	0.029709	[0.02-0.04] unit increase	NR [17166351] (imputed)	N
885	chr5	39385640	39385641	rs2542713	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	5p13.1		rs2542713-C	NR	3E-9		0.0098	[0.0065-0.0131] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
885	chr5	39385640	39385641	rs2542713	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in diabetes	70,762 European ancestry individuals, 20,967 African American individuals	NA	5p13.1	DAB2	rs2542713-A	0.451	6E-8		0.484	[0.31-0.66] unit decrease	Affymetrix [NR] (imputed)	N
885	chr5	39387608	39387609	rs74874126	31250787	Fawns-Ritchie C	2019-06-01	Twin Res Hum Genet	Genetic Contributions to Health Literacy.	Health literacy	1,771 English ancestry cases, 4,012 English ancestry controls	NA	5p13.1	C9, DAB2	rs74874126-T	NR	8E-6		0.02577	[0.014-0.037] unit increase	Illumina [NR] (imputed)	N
885	chr5	39389810	39389811	rs67066752	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C9	5,364 Icelandic ancestry individuals	NA	5p13.1		rs67066752-A	0.01353	2E-11		0.550301	[0.39-0.71] unit increase	Illumina [7506463] (imputed)	N
885	chr5	39390121	39390121	rs34356831	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	5p13.1		rs34356831-AT	0.288229	1E-8		0.01284	[0.0084-0.0172] unit decrease	Illumina [13479295] (imputed)	N
885	chr5	39390121	39390121	rs34356831	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	5p13.1	DAB2	rs34356831-?	NR	2E-9		0.019194756	[0.013-0.025] unit decrease	Illumina [27896057] (imputed)	N
885	chr5	39392726	39392727	rs75459462	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	5p13.1	NR	rs75459462-A	NR	6E-28		0.0417	[0.034-0.049] unit decrease	Affymetrix [9000000] (imputed)	N
885	chr5	39392726	39392727	rs75459462	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	5p13.1	NR	rs75459462-A	NR	3E-28		0.042	[0.035-0.049] unit increase	Affymetrix [9000000] (imputed)	N
885	chr5	39393732	39393733	rs10062079	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Creatinine levels	69,591 European ancestry individuals	NA	5p13.1	DAB2	rs10062079-A	0.41289	5E-12		0.042873	[0.032-0.054] unit increase	Illumina [24961484] (imputed)	N
885	chr5	39394851	39394851	rs767292631	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Creatinine levels	110,051 European ancestry individuals	NA	5p13.1		rs767292631-GGCATTATT,rs767292631-GGCATTATT	0.574628	5E-19		0.031994	[0.025-0.039] unit decrease	NR [11722792] (imputed)	N
885	chr5	39394851	39394851	rs767292631	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Creatinine levels	110,051 European ancestry individuals	NA	5p13.1		rs767292631-GGCATTATT,rs767292631-GGCATTATT	0.574628	5E-19		0.031994	[0.025-0.039] unit decrease	NR [11722792] (imputed)	N
885	chr5	39394988	39394989	rs2255280	22158540	Wu C	2011-12-11	Nat Genet	Genome-wide association study identifies five loci associated with susceptibility to pancreatic cancer in Chinese populations.	Pancreatic cancer	981 Han Chinese ancestry cases, 1,991 Han Chinese ancestry controls	2,603 Han Chinese ancestry cases, 2,877 Han Chinese ancestry controls	5p13.1	DAB2	rs2255280-T	NR	4E-10		1.23	[1.15-1.32]	Affymetrix [666141]	N
885	chr5	39397131	39397132	rs11959928	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in non-diabetics	152,624 European ancestry individuals, 36,369 African American individuals	NA	5p13.1	DAB2	rs11959928-A	0.417	9E-14		0.387	[0.29-0.49] unit decrease	Affymetrix [NR] (imputed)	N
885	chr5	39397131	39397132	rs11959928	26831199	Pattaro C	2016-01-21	Nat Commun	Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function.	Glomerular filtration rate in non diabetics (creatinine)	118,448 European ancestry individuals	36,433 European ancestry individuals	5p13.1	DAB2	rs11959928-A	NR	7E-19		0.0082	[0.0064-0.01] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
885	chr5	39397131	39397132	rs11959928	26831199	Pattaro C	2016-01-21	Nat Commun	Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function.	Glomerular filtration rate (creatinine)	133,413 European ancestry individuals	42,166 European ancestry individuals, up to 16,471 African ancestry individuals, up to 42,296 Asian ancestry individuals	5p13.1	DAB2	rs11959928-A	0.44	2E-20	(EA)	0.0083	[0.0065-0.0101] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
885	chr5	39397131	39397132	rs11959928	20383146	Kottgen A	2010-04-11	Nat Genet	New loci associated with kidney function and chronic kidney disease.	Chronic kidney disease	Up to 67,093 European ancestry individuals	Up to 22,982 European ancestry individuals	5p13.1	DAB2, C9	rs11959928-A	0.44	1E-7	(eGFRcrea)	0.01	[0.007-0.011] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
885	chr5	39400304	39400305	rs12153248	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	5p13.1	DAB2	rs12153248-T	0.313	9E-10		0.266	[0.1-0.43] ml/min/1.73m2 decrease	Affymetrix, Illumina [at least 5248638] (imputed)	N
885	chr5	39404526	39404527	rs138107037	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	5p13.1		rs138107037-A	NR	1E-90		0.0399	[0.036-0.044] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
885	chr5	39404526	39404527	rs138107037	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	5p13.1	DAB2	rs138107037-A	0.382	6E-36		0.0049	[0.0043-0.0055] unit decrease	Affymetrix [NR] (imputed)	N
885	chr5	39406496	39406497	rs3914167	19838195	Gateva V	2009-11-01	Nat Genet	A large-scale replication study identifies TNIP1, PRDM1, JAZF1, UHRF1BP1 and IL10 as risk loci for systemic lupus erythematosus.	Systemic lupus erythematosus	1,310 European ancestry cases, 7,859 European ancestry controls	1,963 European ancestry cases, 4,329 European ancestry controls	5p13.1	DAB2, C9	rs3914167-G	0.27	8E-6		1.15	[1.09-1.23]	Illumina [~ 2100000] (imputed)	N
885	chr5	39414206	39414207	rs2367585	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	5p13.1		rs2367585-T	NR	9E-33		0.026	[0.022-0.03] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
885	chr5	39416293	39416294	rs10058075	29432556	Brooke RJ	2018-02-08	J Natl Cancer Inst	A High-risk Haplotype for Premature Menopause in Childhood Cancer Survivors Exposed to Gonadotoxic Therapy.	Premature menopause in childhood cancer survivors	27 European ancestry cases, 3 African ancestry cases, 658 European ancestry controls, 111 African ancestry controls	NA	5p13.1	DAB2	rs10058075-G	NR	4E-6		11.64	[3.18-42.63]	Affymetrix [10993255] (imputed)	N
885	chr5	39418886	39418887	rs3849768	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	5p13.1		rs3849768-A	NR	3E-13		0.0186	[0.014-0.024] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
885	chr5	39421278	39421279	rs3849769	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	5p13.1		rs3849769-A	NR	2E-27		0.0155	[0.013-0.018] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
885	chr5	39421735	39421736	rs11951093	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	5p13.1	DAB2	rs11951093-A	0.4157	2E-54	(EA)	0.0056	[0.0048-0.0064] unit decrease	Affymetrix [NR] (imputed)	N
885	chr5	39421735	39421736	rs11951093	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	5p13.1	DAB2	rs11951093-A	0.4157	9E-67		0.0056	[0.0048-0.0064] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
885	chr5	39424627	39424628	rs1818782	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	5p13.1	DAB2	rs1818782-A	0.3437	4E-14		0.0151	[0.011-0.019] unit decrease	Affymetrix [18391927] (imputed)	N
885	chr5	39424627	39424628	rs1818782	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	5p13.1	DAB2	rs1818782-C	0.636941	4E-9		0.015568	[0.01-0.021] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
885	chr5	39424627	39424628	rs1818782	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5p13.1		rs1818782-?	NR	1E-41				NR [~ 8900000] (imputed)	N
885	chr5	39424627	39424628	rs1818782	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Aspartate aminotransferase levels	134,154 Japanese ancestry individuals	NA	5p13.1	DAB2	rs1818782-?	NR	7E-9		0.02437	[0.016-0.033] unit increase novel	Illumina [6108953] (imputed)	N
885	chr5	39426019	39426020	rs3812040	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	5p13.1	NR	rs3812040-?	NR	7E-6		0.02812055	[0.016-0.04] unit decrease	Illumina [34656550] (imputed)	N
885	chr5	39426306	39426307	rs13179493	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	5p13.1	DAB2	rs13179493-C	0.2152	9E-28		10.924	NR z score decrease	Illumina [26237160] (imputed)	N
885	chr5	39426306	39426307	rs13179493	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	5p13.1	DAB2	rs13179493-?	NR	2E-17				Affymetrix, Illumina [at least 5248638] (imputed)	N
885	chr5	39426306	39426307	rs13179493	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	5p13.1	DAB2	rs13179493-T	0.714547	2E-36		0.0266526	[0.023-0.031] unit decrease	NR [13737936] (imputed)	N
885	chr5	39426306	39426307	rs13179493	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	5p13.1		rs13179493-?	NR	9E-49				NR [~ 8900000] (imputed)	N
885	chr5	39426306	39426307	rs13179493	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	5p13.1		rs13179493-?	NR	4E-49		0.0323912	[0.028-0.037] unit decrease	Affymetrix [20259828] (imputed)	N
885	chr5	39426326	39426327	rs3812039	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	5p13.1		rs3812039-?	NR	2E-45		0.0323144	[0.028-0.037] unit increase	Affymetrix [20259828] (imputed)	N
885	chr5	39430810	39430811	rs10941433	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	5p13.1	DAB2	rs10941433-C	0.886748	9E-21		0.0283007	[0.022-0.034] unit increase	NR [13737936] (imputed)	N
885	chr5	39430940	39430941	rs34209642	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	5p13.1	NR	rs34209642-A	NR	8E-39		0.04	[0.034-0.046] unit increase	Affymetrix [9000000] (imputed)	N
885	chr5	39430940	39430941	rs34209642	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	5p13.1	NR	rs34209642-A	NR	4E-41		0.0413	[0.035-0.047] unit decrease	Affymetrix [9000000] (imputed)	N
885	chr5	39434502	39434503	rs116560861	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-hip ratio	1,254 whole genome sequenced European ancestry individuals, 3,071 whole genome sequenced individuals, 29,723 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,053 Mylopotamos (founder/genetic isolate) individuals, 879 Pomak (founder/genetic isolate) individuals	206,053 European ancestry individuals	5p13.1	DAB2	rs116560861-T	0.9972	6E-6		0.471	[0.27-0.67] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
885	chr5	39436243	39436244	rs28698773	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	5p13.1	NR	rs28698773-C	NR	5E-18		0.0324	[0.025-0.04] unit increase	Affymetrix [9000000] (imputed)	N
885	chr5	39436243	39436244	rs28698773	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	5p13.1	NR	rs28698773-C	NR	7E-18		0.0324	[0.025-0.04] unit decrease	Affymetrix [9000000] (imputed)	N
885	chr5	39438061	39438062	rs11956816	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	5p13.1	NR	rs11956816-T	NR	2E-9		0.0333	[0.023-0.044] unit decrease	Affymetrix [9000000] (imputed)	N
885	chr5	39438061	39438062	rs11956816	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	5p13.1	NR	rs11956816-T	NR	6E-10		0.0343	[0.024-0.045] unit increase	Affymetrix [9000000] (imputed)	N
886	chr5	39477424	39477426	rs55748242	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	5p13.1	intergenic	rs55748242-C	NR	8E-7	(EA)			Illumina [up to 11995908] (imputed)	N
886	chr5	39477934	39477935	rs6879220	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	5p13.1	LOC101926940	rs6879220-A	0.392626	5E-10		0.0119156	[0.0082-0.0157] unit increase	NR [13737936] (imputed)	N
886	chr5	39481272	39481273	rs184677890	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	150,068 East Asian ancestry individuals	NA	5p13.1		rs184677890-A	0.170093	2E-10		0.0300305	[0.021-0.039] unit increase	Illumina [13478956] (imputed)	N
886	chr5	39504199	39504200	rs78838948	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	5p13.1	DAB2	rs78838948-C	0.0787961036851509	4E-6		0.0045781	[NR] unit decrease	Affymetrix [> 30000000] (imputed)	N
886	chr5	39516962	39516963	rs115410323	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5p13.1	NR	rs115410323-C	0.01045	5E-9	(SBDS)	0.06528	NR unit increase	Illumina [1671387] (imputed)	N
886	chr5	39522480	39522481	rs2910949	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	5p13.1	DAB2	rs2910949-T	0.645112	2E-11		0.0134098	[0.0095-0.0173] unit decrease	Affymetrix [NR] (imputed)	N
886	chr5	39527216	39527217	rs576258682	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5p13.1	NR	rs576258682-A	0.01045	1E-8	(PTMA)	0.06761	NR unit increase	Illumina [1671387] (imputed)	N
886	chr5	39533317	39533318	rs2910953	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	5p13.1	DAB2, PTGER4	rs2910953-A	0.25	1E-29		11.3	z-score increase	Affymetrix [4314223] (imputed)	N
886	chr5	39546705	39546706	rs7700617	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	5p13.1	DAB2	rs7700617-C	0.502653	1E-10		0.0126975	[0.0088-0.0166] unit increase	Affymetrix [NR] (imputed)	N
886	chr5	39555302	39555303	rs2939328	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Aspartate aminotransferase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	5p13.1	LINC02104, LINC00603	rs2939328-?		3E-9		0.0242	[0.016-0.032] unit decrease	Illumina [31500000] (imputed)	N
886	chr5	39566332	39566333	rs115634741	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	5p13.1	NR	rs115634741-A	NR	1E-12		0.0718	[0.052-0.092] unit decrease	Affymetrix [9000000] (imputed)	N
887	chr5	39591601	39591602	rs115403343	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	5p13.1	LINC02104	rs115403343-T	0.9783	2E-9		0.0182	[0.012-0.024] unit increase	Affymetrix, Illumina [8176554] (imputed)	N
887	chr5	39635943	39635944	rs34194416	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Diastolic blood pressure (long-term average)	5,304 African American individuals	6,500 African American individuals	5p13.1	NR	rs34194416-G	0.814	6E-7		1.2741	[0.77-1.77] mmHg decrease	Affymetrix, Illumina [NR] (imputed)	N
887	chr5	39659441	39659442	rs147140551	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Creatine kinase levels	106,080 Japanese ancestry individuals	NA	5p13.1	LOC101926940, LINC00603	rs147140551-?	NR	1E-10		0.03117	[0.022-0.041] unit decrease novel	Illumina [6108953] (imputed)	N
887	chr5	39697282	39697283	rs62359711	31830031	Chernus JM	2019-12-12	PLoS Genet	A candidate gene analysis and GWAS for genes associated with maternal nondisjunction of chromosome 21.	Maternal nondisjunction of chromosome 21 (MII error vs fathers)	157 mothers, 645 fathers	NA	5p13.1	NR	rs62359711-?		7E-6		5.22	[NR]	Illumina [NR] (imputed)	N
887	chr5	39712291	39712292	rs62359715	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CREBBP	5,344 Icelandic ancestry individuals	NA	5p13.1		rs62359715-T	0.01353	4E-41		0.947076	[0.81-1.09] unit increase	Illumina [7506463] (imputed)	N
887	chr5	39712291	39712292	rs62359715	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C9	5,366 Icelandic ancestry individuals	NA	5p13.1		rs62359715-T	0.01353	3E-18		0.688566	[0.53-0.84] unit decrease	Illumina [7506463] (imputed)	N
888	chr5	39743953	39743954	rs72745623	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	5p13.1	NR	rs72745623-G	0.280608	9E-11		0.013368	[0.0093-0.0174] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
888	chr5	39783661	39783662	rs72747526	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5p13.1	NR	rs72747526-A	0.237875	8E-12				Affymetrix, Illumina [24653286] (imputed)	N
888	chr5	39788003	39788004	rs62090852	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5p13.1	NR	rs62090852-A	0.264795	2E-11				Affymetrix, Illumina [24558453] (imputed)	N
888	chr5	39788003	39788004	rs62090852	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	5p13.1	NR	rs62090852-A	0.314756	2E-11		0.014206	[0.01-0.018] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
889	chr5	39847331	39847332	rs117348317	32682390	Wang W	2020-07-18	BMC Genomics	Heritability and genome-wide association analyses of fasting plasma glucose in Chinese adult twins.	Fasting plasma glucose	382 Chinese ancestry twin pairs	NA	5p13.1	GCSHP1	rs117348317-?		6E-6				NR [7405822] (imputed)	N
889	chr5	39871446	39871447	rs4016485	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	5p13.1	DAB2	rs4016485-G	0.853	3E-6		0.33	[0.058-0.602] ml/min/1.73m2 decrease	Affymetrix, Illumina [at least 5248638] (imputed)	N
889	chr5	39877060	39877061	rs111297126	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	5p13.1	NR	rs111297126-C	NR	7E-22		0.0846	[0.067-0.102] unit decrease	Affymetrix [9000000] (imputed)	N
889	chr5	39902364	39902365	rs11954519	23263486	Kottgen A	2012-12-23	Nat Genet	Genome-wide association analyses identify 18 new loci associated with serum urate concentrations.	Urate levels	49,825 European ancestry males, 60,522 European ancestry females	Up to 32,813 European ancestry individuals	5p13.1	DAB2	rs11954519-A	0.73	4E-6	(women)	0.033	[0.019-0.047] mg/dl decrease	Affymetrix, Illumina, Perlegen [2450547] (imputed)	N
889	chr5	39923354	39923355	rs76052928	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	5p13.1	NR	rs76052928-A	NR	6E-12		0.0389	[0.028-0.05] unit decrease	Affymetrix [9000000] (imputed)	N
889	chr5	39950265	39950266	rs495237	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	5p13.1	LINC00603	rs495237-T	0.2487	1E-15		0.0027	[0.0021-0.0033] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
889	chr5	39950265	39950266	rs495237	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	5p13.1	LINC00603	rs495237-T	0.2484	1E-14		0.0029	[0.0021-0.0037] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
889	chr5	39961617	39961618	rs116379131	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	5p13.1	LINC00603	rs116379131-A	0.0341	3E-8		0.0579	[0.037-0.078] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
889	chr5	39961617	39961618	rs116379131	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	5p13.1	LINC00603	rs116379131-A	0.0346	4E-7		0.054784	[0.034-0.076] mg/dL decrease	Affymetrix, Illumina [8217339] (imputed)	N
889	chr5	39961617	39961618	rs116379131	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	5p13.1	NR	rs116379131-A	0.0353	7E-6	(men)	0.079	[0.045-0.113] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
889	chr5	39969344	39969345	rs412118	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	5p13.1		rs412118-?	NR	2E-8				NR [~ 8900000] (imputed)	N
889	chr5	39972649	39972650	rs62359347	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	5p13.1	NR	rs62359347-?	NR	5E-6		0.240559	[0.14-0.34] unit increase	NR [13958389] (imputed)	N
890	chr5	39979171	39979172	rs10053502	32439431	Simard M	2020-05-19	J Allergy Clin Immunol	Polygenic risk score for atopic dermatitis in the Canadian population.	Atopic dermatitis (moderate to severe)	222 South East Asian ancestry, East Asian ancestry, South Asian ancestry, African American or Afro-Caribbean, European ancestry, Greater Middle Eastern (Middle Eastern, North African or Persian) cases, 2,466 Greater Middle Eastern (Middle Eastern, North African or Persian), Hispanic or Latin American, NR moderate to severe atopic dermatitis cases, 2,466 South East Asian ancestry, East Asian ancestry, South Asian ancestry, African American or Afro-Caribbean, European ancestry, Greater Middle Eastern (Middle Eastern, North African or Persian) cases, 2,466 Greater Middle Eastern (Middle Eastern, North African or Persian), Hispanic or Latin American, NR controls without moderate to severe atopic dermatitis	NA	5p13.1		rs10053502-T	NR	5E-15	(additive)	1.259	[0.944-1.574] unit increase	Illumina [5894709] (imputed)	N
890	chr5	39979171	39979172	rs10053502	23049088	Meng W	2012-10-09	Invest Ophthalmol Vis Sci	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		5p13.1	intergenic	rs10053502-?	0.759	1E-16			[NR]	Affymetrix, Illumina [152234]	N
890	chr5	39994899	39994900	rs7706096	31985003	Boocock J	2020-01-27	Hum Mol Genet	Genomic dissection of 43 serum urate-associated loci provides multiple insights into molecular mechanisms of urate control.	Urate levels	110,238 European ancestry individuals, 21,471 East Asian individuals	NA	5p13.1	LINC00603	rs7706096-G		4E-8		0.028	[0.018-0.038] mg/dl increase	NR [NR] (imputed)	N
890	chr5	40059772	40059773	rs11953595	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	5p13.1	NR	rs11953595-A	0.262669	2E-11		0.0233203	[0.016-0.03] unit decrease	NR [19129689] (imputed)	N
890	chr5	40100369	40100370	rs924981	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	5p13.1	LINC00603	rs924981-A	0.7911	3E-13		0.0076	[0.0056-0.0096] unit increase	Affymetrix, Illumina [8176554] (imputed)	N
890	chr5	40102442	40102443	rs7708610	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	5p13.1	LINC00603, PTGER4	rs7708610-A	0.3564	4E-9	(conditioned on lead SNPs in LD)	1.06	[1.04-1.08]	Affymetrix, Illumina [16900397] (imputed)	N
891	chr5	40134776	40134777	rs2548145	21529783	Heath AC	2011-04-27	Biol Psychiatry	A quantitative-trait genome-wide association study of alcoholism risk in the community: findings and implications.	Alcoholism (alcohol use disorder factor score)	2,062 European ancestry alcohol dependence cases, 6,692 European ancestry controls	3,393 European ancestry individuals	5p13.1	intergenic	rs2548145-G	0.47	2E-6		0.081	[NR] unit decrease	Illumina [~ 300000]	N
891	chr5	40142596	40142597	rs13175510	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	5p13.1	NR	rs13175510-T	NR	2E-9		0.0274	[0.019-0.036] unit increase	Affymetrix [9000000] (imputed)	N
891	chr5	40201799	40201800	rs353339	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	5p13.1	intergenic	rs353339-?	NR	5E-13	(subset analysis)			Illumina [130052]	N
891	chr5	40204018	40204019	rs79563968	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	5p13.1	NR	rs79563968-T	NR	7E-14		0.0645	[0.048-0.081] unit decrease	Affymetrix [9000000] (imputed)	N
891	chr5	40237017	40237018	rs1842076	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	5p13.1	NR	rs1842076-A	0.72	4E-15	(EA)	1.090434		Affymetrix, Illumina [~ 9000000] (imputed)	N
891	chr5	40237017	40237018	rs1842076	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	5p13.1	NR	rs1842076-A	0.72	2E-16	(EA)	1.1168399	[1.09-1.14]	Affymetrix, Illumina [~ 9000000] (imputed)	N
891	chr5	40237373	40237374	rs36019094	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	5p13.1	intergenic	rs36019094-A	0.262	1E-6	(Estradiol )	0.03	[NR] pg/mL increase	Illumina [899892]	N
892	chr5	40247221	40247222	rs141561170	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Colon polyp	22,049 European ancestry cases, 332,368 European ancestry controls, 4,768 East Asian ancestry cases, 166,052 East Asian ancestry controls	NA	5p13.1		rs141561170-C	NR	2E-11		0.0756	[0.053-0.098] unit increase	Affymetrix, Illumina [20457468] (imputed)	N
892	chr5	40265903	40265904	rs1348612	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Colorectal cancer	3,351 White British ancestry cases, 271,479 White British ancestry controls	NA	5p13.1		rs1348612-?	NR	3E-7		1.14633	[1.09-1.2]	NR [675173]	N
892	chr5	40280075	40280076	rs12514517	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	5p13.1	LINC00603, PTGER4	rs12514517-A	0.288	4E-21		1.1	[1.08-1.12]	Affymetrix, Illumina [16900397] (imputed)	N
892	chr5	40280201	40280202	rs1445011	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Colorectal cancer	6,581 European ancestry cases, 463,421 European ancestry controls, 8,305 East Asian ancestry cases, 159,386 East Asian ancestry controls	NA	5p13.1		rs1445011-C	NR	5E-10		0.111	[0.076-0.146] unit increase	Affymetrix, Illumina [25843452] (imputed)	N
892	chr5	40280201	40280202	rs1445011	31089142	Law PJ	2019-05-14	Nat Commun	Association analyses identify 31 new risk loci for colorectal cancer susceptibility.	Colorectal cancer	31,197 European ancestry cases, 61,770 European ancestry controls	NA	5p13.1	NR	rs1445011-C	NR	1E-17		1.11	[1.08-1.13]	Affymetrix, Illumina [> 10000000] (imputed)	N
892	chr5	40281797	40281797	rs58791712	29917119	Schmit SL	2018-06-16	J Natl Cancer Inst	Novel Common Genetic Susceptibility Loci for Colorectal Cancer.	Colorectal cancer	36,948 European ancestry cases, 30,864 European ancestry controls	12,952 European ancestry cases, 48,383 European ancestry controls, 8,580 East Asian ancestry cases, 13,050 East Asian ancestry controls, 1,611 Hispanic cases, 4,330 Hispanic controls, 1,894 African American cases, 4,703 African American controls	5p13.1	NR	rs58791712-GT	0.255	7E-14	(EA)	1.098901	[1.08-1.12]	Affymetrix, Illumina [12931465] (imputed)	N
892	chr5	40282566	40282567	rs72748485	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Hyperopia	10,828 European ancestry hyperopia cases, 21,416 European ancestry emmetropia controls	NA	5p13.1	NR	rs72748485-?	NR	1E-6		0.224886	[0.13-0.32] unit increase	NR [13958389] (imputed)	N
892	chr5	40306866	40306867	rs191982155	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H measurement	252 European ancestry individuals	NA	5p13.1		rs191982155-T	NR	1E-6		7.5782	[4.6-10.55] unit decrease	Illumina [NR] (imputed)	N
892	chr5	40319876	40319877	rs1445002	29855589	Chernus J	2018-05-31	Sci Rep	GWAS reveals loci associated with velopharyngeal dysfunction.	Velopharyngeal dysfunction	54 Hispanic or Latin American and unknown ancestry cases, 922 Hispanic or Latin American and unknown ancestry controls	NA	5p13.1	NR	rs1445002-?	NR	6E-7		0.094863676	[NR] unit decrease	Illumina [at least 269494] (imputed)	N
892	chr5	40323766	40323767	rs78077440	28445677	Steri M	2017-04-27	N Engl J Med	Overexpression of the Cytokine BAFF and Autoimmunity Risk.	Multiple sclerosis	2,273 Sardinian cases, 2,148 Sardinian controls	6,840 European ancestry cases, 661 Sardinian cases, 3,176 cases, 6,044 European ancestry controls, 1,244 Sardinian controls, 2,958 controls	5p13.1	PTGER4	rs78077440-G	0.716	2E-6		1.26		Affymetrix [~ 12200000] (imputed)	N
893	chr5	40392727	40392728	rs4613763	21833088	Sawcer S	2011-08-11	Nature	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	5p13.1	PTGER4	rs4613763-G	NR	3E-16		1.2	[1.18-1.22]	Illumina [465434]	N
893	chr5	40392727	40392728	rs4613763	18587394	Barrett JC	2008-06-29	Nat Genet	Genome-wide association defines more than 30 distinct susceptibility loci for Crohn's disease.	Crohn's disease	3,230 European ancestry cases, 4,829 European ancestry controls	1,339 European ancestry trios, 2,325 European ancestry cases, 1,809 European ancestry controls	5p13.1	PTGER4	rs4613763-C	0.13	7E-27		1.32	[NR]	Affymetrix, Illumina [635547] (imputed)	N
893	chr5	40396424	40396425	rs11749040	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	5p13.1	LINC00603	rs11749040-A	NR	5E-25		1.1495575	NR	Affymetrix, Illumina [8278136] (imputed)	N
893	chr5	40396424	40396425	rs11749040	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	5p13.1	intergenic	rs11749040-?	NR	7E-28	(subset analysis)			Illumina [130052]	N
893	chr5	40399095	40399096	rs6880778	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	5p13.1	NR	rs6880778-?	NR	5E-65	(EA)			Affymetrix, Illumina [~ 9000000] (imputed)	N
893	chr5	40399095	40399096	rs6880778	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	5p13.1	Intergenic	rs6880778-G	0.61	8E-20		1.12		Illumina [161311]	N
893	chr5	40401508	40401509	rs17234657	17554300	Wellcome Trust Case Control Consortium	2007-06-07	Nature	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Crohn's disease	1,748 European ancestry cases, 2,938 European ancestry controls	(see Parkes 2007)	5p13.1	intergenic	rs17234657-G	0.13	2E-12		1.54	[1.34-1.76]	Affymetrix [469557]	N
893	chr5	40410583	40410584	rs11742570	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Ulcerative colitis	12,366 European and unknown ancestry cases, 33,609 European and unknown ancestry controls	NA	5p13.1	Intergenic	rs11742570-?		3E-7				Illumina [9578670] (imputed)	N
893	chr5	40410583	40410584	rs11742570	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	5p13.1	Intergenic	rs11742570-?		4E-40				Illumina [9725440] (imputed)	N
893	chr5	40410583	40410584	rs11742570	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	5p13.1	Intergenic	rs11742570-?		1E-55				Illumina [9560910] (imputed)	N
893	chr5	40410583	40410584	rs11742570	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	5p13.1	NR	rs11742570-G	0.61	6E-11	(EA)	1.0874969		Affymetrix, Illumina [~ 9000000] (imputed)	N
893	chr5	40410583	40410584	rs11742570	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	5p13.1	NR	rs11742570-G	0.61	4E-87	(EA)	1.2804482	[1.26-1.3]	Affymetrix, Illumina [~ 9000000] (imputed)	N
893	chr5	40410583	40410584	rs11742570	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	5p13.1	PTGER4	rs11742570-C	0.605	2E-82		1.198	[1.164-1.234]	Affymetrix, Illumina [1230000] (imputed)	N
893	chr5	40410583	40410584	rs11742570	22936669	Julia A	2012-08-30	Gut	A genome-wide association study on a southern European population identifies a new Crohn's disease susceptibility locus at RBX1-EP300.	Crohn's disease	1,277 European ancestry cases, 1,488 European ancestry controls	1,365 European ancestry cases, 1,396 European ancestry controls	5p13.1	PTGER4	rs11742570-C	NR	1E-6		1.32	[NR]	Illumina [508934]	N
893	chr5	40410583	40410584	rs11742570	21102463	Franke A	2010-11-21	Nat Genet	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry trios	5p13.1	PTGER4	rs11742570-C	0.606	7E-36		1.33	[1.27-1.39]	Affymetrix, Illumina [953241] (imputed)	N
893	chr5	40410934	40410935	rs6451493	21297633	Anderson CA	2011-02-06	Nat Genet	Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47.	Ulcerative colitis	6,687 European ancestry cases, 19,718 European ancestry controls	9,628 European ancestry cases, 12,917 European ancestry controls	5p13.1	PTGER4	rs6451493-T	0.61	3E-9		1.08	[1.04-1.12]	Affymetrix, Illumina [~ 1100000] (imputed)	N
893	chr5	40414988	40414989	rs1992661	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	5p13.1	intergenic	rs1992661-?	NR	1E-74	(subset analysis)			Illumina [130052]	N
893	chr5	40415066	40415067	rs1992660	17684544	Franke A	2007-08-08	PLoS One	Systematic association mapping identifies NELL1 as a novel IBD disease gene.	Crohn's disease	393 European ancestry cases, 399 European ancestry controls	375 European ancestry trios, 1,395 European ancestry cases, 1,603 European ancestry controls, 454 French Canadian founder trios, 466 French Canadian founder cases, 358 French Canadian founder controls	5p13.1	PTGER4	rs1992660-?	0.39	4E-7		1.42	[1.24-1.67]	Affymetrix [92387]	N
893	chr5	40415610	40415611	rs10071761	27723758	Bronson PG	2016-10-10	Nat Genet	Common variants at PVT1, ATG13-AMBRA1, AHI1 and CLEC16A are associated with selective IgA deficiency.	Selective IgA deficiency	1,635 European ancestry cases, 4,852 European ancestry controls	NA	5p13.1	PTGER4	rs10071761-C		5E-7		1.25	[NR]	Illumina [up to 9464381] (imputed)	N
893	chr5	40424425	40424426	rs6896969	19525953	De Jager PL	2009-06-14	Nat Genet	Meta-analysis of genome scans and replication identify CD6, IRF8 and TNFRSF1A as new multiple sclerosis susceptibility loci.	Multiple sclerosis	2,624 European ancestry cases, 7,220 European ancestry controls	2,215 European ancestry cases, 2,116 European ancestry controls	5p13.1	PTGER4	rs6896969-C	0.62	2E-7		1.1	[1.01-1.20]	Affymetrix, Illumina [~ 2560000] (imputed)	N
893	chr5	40426419	40426420	rs957100	33600772	Somineni HK	2021-02-17	Am J Hum Genet	Whole-genome sequencing of African Americans implicates differential genetic architecture in inflammatory bowel disease.	Inflammatory bowel disease	1,774 African American cases, 1,644 African American controls	NA	5p13.1		rs957100-G	0.3963	9E-9		0.73		NR [93400000]	N
893	chr5	40426419	40426420	rs957100	33600772	Somineni HK	2021-02-17	Am J Hum Genet	Whole-genome sequencing of African Americans implicates differential genetic architecture in inflammatory bowel disease.	Crohn's disease	1,335 African American cases, 1,644 African American controls	NA	5p13.1		rs957100-G	0.3963	5E-8		0.74		NR [93400000]	N
893	chr5	40427384	40427385	rs56276612	29855589	Chernus J	2018-05-31	Sci Rep	GWAS reveals loci associated with velopharyngeal dysfunction.	Velopharyngeal dysfunction	54 Hispanic or Latin American and unknown ancestry cases, 922 Hispanic or Latin American and unknown ancestry controls	NA	5p13.1	NR	rs56276612-?	NR	1E-7		0.096516006	[NR] unit decrease	Illumina [at least 269494] (imputed)	N
893	chr5	40431182	40431183	rs1373692	17447842	Libioulle C	2007-03-05	PLoS Genet	Novel Crohn disease locus identified by genome-wide association maps to a gene desert on 5p13.1 and modulates expression of PTGER4.	Crohn's disease	547 European ancestry cases, 928 European ancestry controls	1,266 European ancestry cases, 559 European ancestry controls, Up to 428 European ancestry trios	5p13.1	intergenic	rs1373692-?	0.59	2E-12		1.46	[NR]	Illumina [302451]	N
893	chr5	40437947	40437948	rs9292777	22570697	Matesanz F	2012-05-03	PLoS One	Genome-wide association study of multiple sclerosis confirms a novel locus at 5p13.1.	Multiple sclerosis	2,127 European ancestry cases, 4,558 European ancestry controls	2,785 European ancestry cases, 2,940 European ancestry controls	5p13.1	PTGER4	rs9292777-T	NR	1E-9		1.19	[1.12-1.25]	Affymetrix, Illumina [130903]	N
893	chr5	40437947	40437948	rs9292777	22412388	Kenny EE	2012-03-08	PLoS Genet	A genome-wide scan of Ashkenazi Jewish Crohn's disease suggests novel susceptibility loci.	Crohn's disease	737 Ashkenazi Jewish cases, 2,257  Ashkenazi Jewish controls	971 Ashkenazi Jewish cases, 2,124 Ashkenazi Jewish controls	5p13.1	PTGER4	rs9292777-T	0.597	2E-11		1.37	[1.28-1.48]	Affymetrix, Illumina [1060934] (imputed)	N
893	chr5	40437947	40437948	rs9292777	17554261	Parkes M	2007-06-06	Nat Genet	Sequence variants in the autophagy gene IRGM and multiple other replicating loci contribute to Crohn's disease susceptibility.	Crohn's disease	1,748 cases, 2,938 controls	1,182 European ancestry cases, 2,024 European ancestry controls	5p13.1	intergenic	rs9292777-?	0.40	3E-18		1.34	[1.20-1.50]	Affymetrix [see WTCCC]	N
893	chr5	40438683	40438684	rs4551125	33608531	Wu Y	2021-02-19	Nat Commun	GWAS of peptic ulcer disease implicates Helicobacter pylori infection, other gastrointestinal disorders and depression.	Inflammatory bowel disease	7,045 European ancestry cases, 449,282 European ancestry controls	NA	5p13.1	NR	rs4551125-G	0.39	8E-10		0.9	[NR]	NR [8546065] (imputed)	N
893	chr5	40441717	40441718	rs10055349	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	5p13.1		rs10055349-A	NR	5E-9		0.0124	[0.0083-0.0165] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
893	chr5	40446548	40446549	rs4957294	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Crohn's disease vs ulcerative colitis (ordinary least squares (OLS))	5,956 Crohn's disease cases, 6,968 ulcerative colitis cases	14,594 Crohn's disease cases, 10,679 ulcerative colitis cases	5p13.1		rs4957294-?	NR	8E-13		0.043	NR unit increase	NR [6490614] (imputed)	N
893	chr5	40486895	40486896	rs7720838	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	5p13.1		rs7720838-T	NR	1E-10		0.0114	[0.0079-0.0149] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
893	chr5	40486895	40486896	rs7720838	23817569	Hinds DA	2013-06-30	Nat Genet	A genome-wide association meta-analysis of self-reported allergy identifies shared and allergy-specific susceptibility loci.	Self-reported allergy	53,862 European ancestry individuals	NA	5p13.1	DAB2, PTGER4	rs7720838-G	0.4254	8E-11		0.0785	[0.055-0.102] unit decrease	Illumina [2400000] (imputed)	N
893	chr5	40487269	40487270	rs7725052	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	5p13.1		rs7725052-T	NR	6E-11		0.0113	[0.008-0.0146] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
893	chr5	40487269	40487270	rs7725052	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic disease (asthma, hay fever or eczema)	106,772 European ancestry cases, 239,773 European ancestry controls	83,335 cases, 34,934 controls	5p13.1	NR	rs7725052-T	0.6082	2E-14		1.0435146	[1.03-1.05]	Affymetrix [15688218] (imputed)	N
893	chr5	40487269	40487270	rs7725052	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	5p13.1		rs7725052-?	NR	1E-22				NR [~ 8900000] (imputed)	N
893	chr5	40487269	40487270	rs7725052	26301688	Li YR	2015-08-24	Nat Med	Meta-analysis of shared genetic architecture across ten pediatric autoimmune diseases.	Pediatric autoimmune diseases	97 European ancestry thyroiditis cases, 107 European ancestry ankylosing spondylitis cases, 100 European ancestry psoriasis cases, 173 European ancestry celiac disease cases, 254 European ancestry systemic lupus erythematosus cases, 308 European ancestry common variable inmunodeficiency cases, 865 European ancestry ulcerative colitis cases, 1,086 European ancestry Type 1 diabetes cases, 1,123  European ancestry juvenile idiopathic arthritis cases, 1,922  European ancestry Crohn's disease cases, 10,718 European ancestry controls	NA	5p13.1	PTGER4	rs7725052-C	0.43	8E-11				Illumina [7347414] (imputed)	N
893	chr5	40488685	40488686	rs10073277	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Crohn's disease vs rheumatoid arthritis (ordinary least squares (OLS))	5,956 Crohn's disease cases, 8,875 rheumatoid arthritis cases	14,594 Crohn's disease cases, 5,486 rheumatoid arthritis cases	5p13.1		rs10073277-?	NR	4E-15		0.065	NR unit increase	NR [5890016] (imputed)	N
893	chr5	40490789	40490790	rs10440635	21743469	Evans DM	2011-07-10	Nat Genet	Interaction between ERAP1 and HLA-B27 in ankylosing spondylitis implicates peptide handling in the mechanism for HLA-B27 in disease susceptibility.	Ankylosing spondylitis	3,023 European ancestry cases, 8,779 European ancestry controls	2,111 European ancestry cases, 4,483 European ancestry controls	5p13.1	PTGER4	rs10440635-A	0.60	3E-7				Illumina [2223620] (imputed)	N
893	chr5	40491986	40491987	rs564897317	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	5p13.1	NR	rs564897317-?	NR	9E-6		4.439	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
893	chr5	40492654	40492655	rs7714574	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	5p13.1	NR	rs7714574-T	0.6032	5E-17		1.0522993	[1.04-1.06]	Affymetrix [15688218] (imputed)	N
893	chr5	40492654	40492655	rs7714574	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	5p13.1	DAB2, PTGER4	rs7714574-T	0.53	6E-10		1.032	[1.02-1.04]	Affymetrix, Illumina [8307659] (imputed)	N
893	chr5	40494677	40494678	rs12520522	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	5p13.1	intergenic	rs12520522-G	0.7402	8E-9		0.0233379	[0.015-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
893	chr5	40496422	40496423	rs9687958	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	5p13.1	intergenic	rs9687958-?	NR	3E-16	(subset analysis)			Illumina [130052]	N
893	chr5	40496929	40496930	rs7707931	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	5p13.1		rs7707931-G	0.8231	2E-12		0.020323364	[0.015-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
893	chr5	40496929	40496930	rs7707931	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	5p13.1	NR	rs7707931-G	0.822022	5E-12		0.016646	[0.012-0.021] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
893	chr5	40497603	40497604	rs4286721	26278503	Huang C	2015-11-01	Gastroenterology	Characterization of genetic loci that affect susceptibility to inflammatory bowel diseases in African Americans.	Crohn's disease	1,088 African American cases, 1,797 African American controls	NA	5p13.1	PTGER4	rs4286721-G	NR	3E-6		1.3368983	[1.18-1.51]	Illumina [130241]	N
893	chr5	40498576	40498577	rs1505992	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	5p13.1	NR	rs1505992-A	0.68	7E-32	(EA)	1.1339794		Affymetrix, Illumina [~ 9000000] (imputed)	N
894	chr5	40521704	40521705	rs1876142	34127860	Robertson CC	2021-06-14	Nat Genet	Fine-mapping, trans-ancestral and genomic analyses identify causal variants, cells, genes and drug targets for type 1 diabetes.	Type 1 diabetes	20,065 European ancestry cases, 33,065 European ancestry controls, 1,045 other-admixed ancestry cases, 1,103 other-admixed ancestry controls, 1,043 African ancestry cases, 3,206 African ancestry controls	NA	5p13.1	PTGER4	rs1876142-T	0.658	2E-14		0.905		Illumina [715631] (imputed)	N
894	chr5	40521704	40521705	rs1876142	34127860	Robertson CC	2021-06-14	Nat Genet	Fine-mapping, trans-ancestral and genomic analyses identify causal variants, cells, genes and drug targets for type 1 diabetes.	Type 1 diabetes	20,065 European ancestry cases, 33,065 European ancestry controls, 1,045 other-admixed ancestry cases, 1,103 other-admixed ancestry controls, 1,043 African ancestry cases, 3,206 African ancestry controls	NA	5p13.1	PTGER4	rs1876142-T	0.658	2E-14		0.905		Illumina [715631] (imputed)	N
894	chr5	40524859	40524860	rs12186979	23749187	Cortes A	2013-07-01	Nat Genet	Identification of multiple risk variants for ankylosing spondylitis through high-density genotyping of immune-related loci.	Ankylosing spondylitis	9,069 European ancestry cases, 1,550 East Asian ancestry cases, 13,578 European ancestry controls, 1,567 East Asian ancestry controls	NA	5p13.1	PTGER4	rs12186979-G	0.498	5E-6	(EA)	1.09		Illumina [128935]	N
894	chr5	40524859	40524860	rs12186979	23749187	Cortes A	2013-07-01	Nat Genet	Identification of multiple risk variants for ankylosing spondylitis through high-density genotyping of immune-related loci.	Ankylosing spondylitis	9,069 European ancestry cases, 1,550 East Asian ancestry cases, 13,578 European ancestry controls, 1,567 East Asian ancestry controls	NA	5p13.1	PTGER4	rs12186979-G	0.498	4E-6		1.08		Illumina [128935]	N
894	chr5	40552473	40552474	rs7713972	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	5p13.1	Intergenic	rs7713972-C	0.1762048	5E-14	(EA, Complement component C7)	0.4319	[0.32-0.54] unit decrease	Affymetrix [509946]	N
894	chr5	40581399	40581400	rs79831708	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	5p13.1	NR	rs79831708-C	NR	1E-32		0.1182	[0.099-0.138] unit decrease	Affymetrix [9000000] (imputed)	N
894	chr5	40615121	40615122	rs924967	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	5p13.1	NR	rs924967-C	0.12	2E-8		0.0159	[0.01-0.022] unit decrease	NR [NR]	N
894	chr5	40620581	40620582	rs4957325	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5p13.1	NR	rs4957325-T	0.813685	2E-12				Affymetrix, Illumina [24653286] (imputed)	N
894	chr5	40620581	40620582	rs4957325	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	5p13.1	NR	rs4957325-T	0.881335	2E-14		0.021888	[0.016-0.028] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
894	chr5	40620581	40620582	rs4957325	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5p13.1	NR	rs4957325-T	0.815743	5E-11				Affymetrix, Illumina [24558453] (imputed)	N
894	chr5	40620581	40620582	rs4957325	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	5p13.1	NR	rs4957325-T	0.881326	1E-12		0.0204	[0.015-0.026] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
894	chr5	40620581	40620582	rs4957325	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	5p13.1	intergenic	rs4957325-T		2E-8		0.02	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
894	chr5	40620581	40620582	rs4957325	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	5p13.1	intergenic	rs4957325-T	0.8815	8E-9		0.03183541	[0.021-0.043] unit decrease	Affymetrix [~ 2500000] (imputed)	N
894	chr5	40623127	40623128	rs1354674	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	5p13.1		rs1354674-T	0.882235	9E-13		0.024692994	[0.018-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
894	chr5	40623127	40623128	rs1354674	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	5p13.1		rs1354674-T	0.882233	5E-13		0.024898896	[0.018-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
894	chr5	40623637	40623638	rs114080964	33002439	Jin G	2020-10-01	Lancet Oncol	Genetic risk, incident gastric cancer, and healthy lifestyle: a meta-analysis of genome-wide association studies and prospective cohort study.	Gastric cancer	10,254 Han Chinese ancestry cases, 10,914 Han Chinese ancestry controls	NA	5p13.1	NR	rs114080964-T	0.14	1E-7		1.18	NR	Affymetrix, Illumina [6957974] (imputed)	N
894	chr5	40626752	40626753	rs11955175	20889312	Wang KS	2010-10-01	Schizophr Res	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	5p13.1	NR	rs11955175-?	NR	6E-6		1.467	[NR]	Affymetrix [722112]	N
895	chr5	40635919	40635920	rs112647987	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	Urea levels	19,293 British ancestry individuals from 6863 families.	NA	5p13.1	intergenic	rs112647987-T	0.068	3E-8		0.11901747	[0.077-0.161] mg/dl decrease	Illumina [24111857] (imputed)	N
895	chr5	40639352	40639353	rs144792755	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C9	5,367 Icelandic ancestry individuals	NA	5p13.1		rs144792755-T	0.01273	9E-17		0.683638	[0.52-0.84] unit decrease	Illumina [7506463] (imputed)	N
895	chr5	40639352	40639353	rs144792755	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C9	5,364 Icelandic ancestry individuals	NA	5p13.1		rs144792755-T	0.01273	1E-17		0.698155	[0.54-0.86] unit decrease	Illumina [7506463] (imputed)	N
895	chr5	40662006	40662007	rs11960585	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	5p13.1		rs11960585-A	NR	3E-136		0.1103	[0.1-0.12] unit decrease	Affymetrix, Illumina [20538307] (imputed)	N
895	chr5	40672421	40672422	rs79575541	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	5p13.1	PTGER4	rs79575541-C	0.9225	4E-84		0.0304	[0.027-0.034] unit increase	Affymetrix, Illumina [8176554] (imputed)	N
895	chr5	40673595	40673596	rs4412150	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	5p13.1		rs4412150-?	NR	3E-10				NR [~ 8900000] (imputed)	N
895	chr5	40674978	40674979	rs11954639	30808845	Thio CHL	2019-02-26	Am J Nephrol	Genome-Wide Association Scan of Serum Urea in European Populations Identifies Two Novel Loci.	Serum urea levels	13,312 European ancestry individuals	7,379 European ancestry individuals	5p13.1	PTGER4	rs11954639-T	0.071	6E-10		0.168	[0.12-0.22] mmol/L decrease	Illumina [1990000] (imputed)	N
895	chr5	40676569	40676570	rs6888517	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5p13.1	NR	rs6888517-T	0.479421	4E-11				Affymetrix, Illumina [24332387] (imputed)	N
895	chr5	40679349	40679349	rs541650464	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	5p13.1	PTGER4	rs541650464-CT	0.54887	6E-9		0.012960085	[0.0086-0.0173] unit decrease	Affymetrix [93095623] (imputed)	N
895	chr5	40681253	40681254	rs2228058	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	5p13.1	NR	rs2228058-T	NR	1E-145		0.1182	[0.11-0.13] unit decrease	Affymetrix [9000000] (imputed)	N
895	chr5	40685794	40685795	rs10036575	26098866	Helgason H	2015-06-22	Nat Genet	Loss-of-function variants in ATM confer risk of gastric cancer.	Gastric cancer	2,500 European ancestry cases, 205,652 European ancestry controls (includes non-array genotyped, whole genome imputed individuals)	NA	5p13.1	PTGER4, TTC33, PRKAA1	rs10036575-T	0.784	5E-6		1.2345679	[NR]	Illumina [~ 25000000] (imputed)	N
895	chr5	40726137	40726138	rs6897169	31383772	Yan C	2019-08-05	Gut	Meta-analysis of genome-wide association studies and functional assays decipher susceptibility genes for gastric cancer in Chinese populations.	Gastric cancer	3,771 Chinese ancestry cases, 5,426 Chinese ancestry controls	7,035 Chinese ancestry cases, 8,323 Chinese ancestry controls	5p13.1	PRKAA1	rs6897169-C	0.51	5E-12		1.25	[1.17-1.33]	Affymetrix, Illumina [6192596] (imputed)	N
895	chr5	40734416	40734416	rs57067284	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gastric cancer	1,029 European ancestry cases, 475,087 European ancestry controls, 7,921 East Asian ancestry cases, 159,201 East Asian ancestry controls	NA	5p13.1		rs57067284-TGAACAGAC	NR	3E-26		0.177	[0.14-0.21] unit decrease	Affymetrix, Illumina [25843697] (imputed)	N
895	chr5	40744037	40744038	rs59585832	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gastric cancer	7,921 East Asian ancestry cases, 159,201 East Asian ancestry controls	NA	5p13.1		rs59585832-T	0.58653409	1E-25		0.17816815	[0.14-0.21] unit decrease	Illumina [13428249] (imputed)	N
895	chr5	40755567	40755568	rs3805495	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	5p13.1		rs3805495-T	0.2505	3E-8		0.13293782	[0.082-0.184] mmHg increase	Affymetrix, Illumina [242865] (imputed)	N
895	chr5	40755567	40755568	rs3805495	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Gastric cancer	6,563 Japanese ancestry cases, 195,745 Japanese ancestry controls	NA	5p13.1		rs3805495-T	0.580090633	9E-20		0.8475453	[0.817886381-0.878279842]	Illumina [8919992] (imputed)	N
896	chr5	40770214	40770220	rs1610943	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	5p13.1	PRKAA1	rs1610943-A	0.703279	1E-11		0.0163835	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
896	chr5	40770214	40770220	rs1610943	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	5p13.1	PRKAA1	rs1610943-A	0.703259	2E-10		0.015413734	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
896	chr5	40770214	40770214	rs776404283	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	5p13.1	NR	rs776404283-D	0.703377	1E-13		0.016124	[0.012-0.02] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
896	chr5	40770219	40770225	rs11279135	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	5p13.1		rs11279135-A	NR	3E-11		0.0152	[0.011-0.02] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
896	chr5	40771215	40771216	rs257009	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5p13.1	NR	rs257009-T	0.724353	3E-14				Affymetrix, Illumina [24246363] (imputed)	N
896	chr5	40771215	40771216	rs257009	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5p13.1	NR	rs257009-T	0.726894	5E-12				Affymetrix, Illumina [20825802] (imputed)	N
896	chr5	40771215	40771216	rs257009	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	5p13.1	NR	rs257009-T	0.703799	2E-12		0.014771	[0.011-0.019] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
896	chr5	40778640	40778641	rs154275	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	5p13.1		rs154275-?	NR	1E-12				NR [~ 8900000] (imputed)	N
896	chr5	40782238	40782239	rs249429	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	5p13.1	PRKAA1	rs249429-T	0.703146	4E-11		0.01620754	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
896	chr5	40790550	40790551	rs10074991	33002439	Jin G	2020-10-01	Lancet Oncol	Genetic risk, incident gastric cancer, and healthy lifestyle: a meta-analysis of genome-wide association studies and prospective cohort study.	Gastric cancer	10,254 Han Chinese ancestry cases, 10,914 Han Chinese ancestry controls	NA	5p13.1	NR	rs10074991-A	0.51	3E-30		0.78	NR	Affymetrix, Illumina [6957974] (imputed)	N
896	chr5	40790550	40790551	rs10074991	26129866	Hu N	2015-06-30	Gut	Genome-wide association study of gastric adenocarcinoma in Asia: a comparison of associations between cardia and non-cardia tumours.	Non-cardia gastric cancer	1,027 East Asian ancestry cases, 2,708 East Asian ancestry controls	3,663  East Asian ancestry cases, 7,548  East Asian ancestry controls	5p13.1	PRKAA1	rs10074991-G	0.483	2E-23		1.3	[1.23-1.37]	Illumina [556896]	N
896	chr5	40790550	40790551	rs10074991	26129866	Hu N	2015-06-30	Gut	Genome-wide association study of gastric adenocarcinoma in Asia: a comparison of associations between cardia and non-cardia tumours.	Gastric cancer	2,350 East Asian ancestry cases, 2,708 East Asian ancestry controls	7,408  East Asian ancestry cases, 7,548  East Asian ancestry controls	5p13.1	PRKAA1	rs10074991-G	0.483	5E-26		1.25	[1.2-1.3]	Illumina [556896]	N
896	chr5	40790550	40790551	rs10074991	26129866	Hu N	2015-06-30	Gut	Genome-wide association study of gastric adenocarcinoma in Asia: a comparison of associations between cardia and non-cardia tumours.	Cardia gastric cancer	1,189 East Asian ancestry cases,  2,708 East Asian ancestry controls	3,738  East Asian ancestry cases,  7,548  East Asian ancestry controls	5p13.1	PRKAA1	rs10074991-G	0.483	7E-12		1.2048193	[1.14-1.27]	Illumina [556896]	N
896	chr5	40791883	40791884	rs13361707	30281874	Tanikawa C	2018-10-03	Cancer Sci	A GWAS identifies gastric cancer susceptibility loci at 12q24.11-12 and 20q11.21.	Gastric cancer	6,171 Japanese ancestry cases, 27,178 Japanese ancestry controls	5,336 Japanese ancestry cases, 11,726 Japanese ancestry controls	5p13.1	NR	rs13361707-C	NR	1E-21		1.18		Illumina [6573681] (imputed)	N
896	chr5	40791883	40791884	rs13361707	26701879	Wang Z	2015-12-23	Gut	Identification of new susceptibility loci for gastric non-cardia adenocarcinoma: pooled results from two Chinese genome-wide association studies.	Non-cardia gastric cancer	2,031 Han Chinese ancestry cases, 4,970 Han Chinese ancestry controls	3,564 Han Chinese ancestry cases, 4,637 Han Chinese ancestry controls	5p13.1	PRKAA1	rs13361707-C	0.503	1E-10		1.32	[0.88-1.43]	Affymetrix, Illumina [6223896] (imputed)	N
896	chr5	40791883	40791884	rs13361707	22037551	Shi Y	2011-10-30	Nat Genet	A genome-wide association study identifies new susceptibility loci for non-cardia gastric cancer at 3q13.31 and 5p13.1.	Gastric cancer	1,006 Han Chinese ancestry cases, 2,273 Han Chinese ancestry controls	3,288 Han Chinese ancestry cases, 3,609 Han Chinese ancestry controls	5p13.1	PRKAA1, PTGER4	rs13361707-?	NR	8E-29		1.41	[1.32-1.49]	Affymetrix [555896]	N
896	chr5	40809099	40809100	rs249437	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	5p13.1		rs249437-G	NR	5E-9		0.0136	[0.0091-0.0181] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
896	chr5	40854681	40854682	rs1697938	27629089	Sailer A	2016-09-14	Neurology	A genome-wide association study in multiple system atrophy.	Multiple system atrophy	918 European ancestry cases, 3,864 European ancestry controls	NA	5p13.1	CARD6	rs1697938-C	0.46	5E-6		1.2658228		Illumina [4903804] (imputed)	N
896	chr5	40869726	40869727	rs75353980	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Paracentral lobule volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	5p13.1	NR	rs75353980-?		3E-6				Illumina [4322238] (imputed)	N
897	chr5	40948489	40948490	rs2459464	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Time-dependent creatinine clearance change response to tenofovir treatment in HIV infection (time and treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	5p13.1	NR	rs2459464-?		5E-6	(African)			Illumina [~ 5140000] (imputed)	N
897	chr5	40960277	40960278	rs2675982	33002439	Jin G	2020-10-01	Lancet Oncol	Genetic risk, incident gastric cancer, and healthy lifestyle: a meta-analysis of genome-wide association studies and prospective cohort study.	Gastric cancer	10,254 Han Chinese ancestry cases, 10,914 Han Chinese ancestry controls	NA	5p13.1	NR	rs2675982-T	0.09	5E-6		1.18	NR	Affymetrix, Illumina [6957974] (imputed)	N
897	chr5	40961163	40961164	rs1901167	28031287	Sasayama D	2016-11-26	Hum Mol Genet	Genome-wide quantitative trait loci mapping of the human cerebrospinal fluid proteome.	Cerebrospinal fluid biomarker levels	133 Japanese ancestry individuals.	NA	5p13.1	NR	rs1901167-?	NR	6E-13	(Complement component C7)			Illumina [514227]	N
897	chr5	40964851	40964852	rs13157656	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	5p13.1	C7, RP11-301A5.2	rs13157656-C	0.2452357	1E-16	(Complement component C7)	0.4008	[0.31-0.49] unit decrease	Affymetrix [509946]	N
897	chr5	40965317	40965318	rs3805221	29234017	Carayol J	2017-12-12	Nat Commun	Protein quantitative trait locus study in obesity during weight-loss identifies a leptin regulator.	Protein levels in obesity	494 European ancestry individuals	NA	5p13.1	NR	rs3805221-?	NR	7E-9	(C7)	0.12	[0.081-0.159] unit decrease	Illumina [4020654] (imputed)	N
897	chr5	40967708	40967709	rs139817151	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	5p13.1	C7	rs139817151-G	0.997	5E-6	(AA)	0.249	NR unit increase	Illumina [NR] (imputed)	N
897	chr5	40972210	40972211	rs74480769	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ZNF276	5,363 Icelandic ancestry individuals	NA	5p13.1		rs74480769-G	0.02157	1E-16		0.534713	[0.41-0.66] unit decrease	Illumina [7506463] (imputed)	N
897	chr5	40972210	40972211	rs74480769	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ZAP70	5,357 Icelandic ancestry individuals	NA	5p13.1		rs74480769-G	0.02157	2E-15		0.498132	[0.38-0.62] unit decrease	Illumina [7506463] (imputed)	N
897	chr5	40972210	40972211	rs74480769	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TNFRSF8	5,354 Icelandic ancestry individuals	NA	5p13.1		rs74480769-G	0.02157	1E-14		0.488783	[0.36-0.61] unit decrease	Illumina [7506463] (imputed)	N
897	chr5	40972210	40972211	rs74480769	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TMOD3	5,355 Icelandic ancestry individuals	NA	5p13.1		rs74480769-G	0.02157	1E-13		0.476247	[0.35-0.6] unit decrease	Illumina [7506463] (imputed)	N
897	chr5	40972210	40972211	rs74480769	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TMCC3	5,355 Icelandic ancestry individuals	NA	5p13.1		rs74480769-G	0.02157	5E-13		0.45814	[0.33-0.58] unit decrease	Illumina [7506463] (imputed)	N
897	chr5	40972210	40972211	rs74480769	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein STX6	5,346 Icelandic ancestry individuals	NA	5p13.1		rs74480769-G	0.02157	3E-12		0.420722	[0.3-0.54] unit decrease	Illumina [7506463] (imputed)	N
897	chr5	40972210	40972211	rs74480769	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SNX7	5,341 Icelandic ancestry individuals	NA	5p13.1		rs74480769-G	0.02157	3E-12		0.424345	[0.3-0.54] unit decrease	Illumina [7506463] (imputed)	N
897	chr5	40972210	40972211	rs74480769	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SKIL	5,346 Icelandic ancestry individuals	NA	5p13.1		rs74480769-G	0.02157	1E-14		0.459739	[0.34-0.58] unit decrease	Illumina [7506463] (imputed)	N
897	chr5	40972210	40972211	rs74480769	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RAD51	5,354 Icelandic ancestry individuals	NA	5p13.1		rs74480769-G	0.02157	2E-13		0.455329	[0.33-0.58] unit decrease	Illumina [7506463] (imputed)	N
897	chr5	40972210	40972211	rs74480769	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RAB5C	5,347 Icelandic ancestry individuals	NA	5p13.1		rs74480769-G	0.02157	1E-17		0.518622	[0.4-0.64] unit decrease	Illumina [7506463] (imputed)	N
897	chr5	40972210	40972211	rs74480769	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RAB17	5,352 Icelandic ancestry individuals	NA	5p13.1		rs74480769-G	0.02157	4E-14		0.467931	[0.35-0.59] unit decrease	Illumina [7506463] (imputed)	N
897	chr5	40972210	40972211	rs74480769	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein POLR1C	5,352 Icelandic ancestry individuals	NA	5p13.1		rs74480769-G	0.02157	9E-18		0.530243	[0.41-0.65] unit decrease	Illumina [7506463] (imputed)	N
897	chr5	40972210	40972211	rs74480769	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PIK3CG	5,349 Icelandic ancestry individuals	NA	5p13.1		rs74480769-G	0.02157	5E-17		0.509606	[0.39-0.63] unit decrease	Illumina [7506463] (imputed)	N
897	chr5	40972210	40972211	rs74480769	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PCDHB4	5,352 Icelandic ancestry individuals	NA	5p13.1		rs74480769-G	0.02157	1E-13		0.453591	[0.33-0.57] unit decrease	Illumina [7506463] (imputed)	N
897	chr5	40972210	40972211	rs74480769	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein OSM	5,348 Icelandic ancestry individuals	NA	5p13.1		rs74480769-G	0.02157	7E-13		0.440842	[0.32-0.56] unit decrease	Illumina [7506463] (imputed)	N
897	chr5	40972210	40972211	rs74480769	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NRXN3	5,346 Icelandic ancestry individuals	NA	5p13.1		rs74480769-G	0.02157	3E-17		0.520968	[0.4-0.64] unit decrease	Illumina [7506463] (imputed)	N
897	chr5	40972210	40972211	rs74480769	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MOCS3	5,351 Icelandic ancestry individuals	NA	5p13.1		rs74480769-G	0.02157	2E-13		0.457874	[0.34-0.58] unit decrease	Illumina [7506463] (imputed)	N
897	chr5	40972210	40972211	rs74480769	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MCEMP1	5,350 Icelandic ancestry individuals	NA	5p13.1		rs74480769-G	0.02157	8E-13		0.429326	[0.31-0.55] unit decrease	Illumina [7506463] (imputed)	N
897	chr5	40972210	40972211	rs74480769	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LRRC74A	5,346 Icelandic ancestry individuals	NA	5p13.1		rs74480769-G	0.02157	1E-12		0.43822	[0.32-0.56] unit decrease	Illumina [7506463] (imputed)	N
897	chr5	40972210	40972211	rs74480769	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LRRC25	5,342 Icelandic ancestry individuals	NA	5p13.1		rs74480769-G	0.02157	1E-13		0.448597	[0.33-0.57] unit decrease	Illumina [7506463] (imputed)	N
897	chr5	40972210	40972211	rs74480769	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein KLK12	5,359 Icelandic ancestry individuals	NA	5p13.1		rs74480769-G	0.02157	1E-14		0.491896	[0.37-0.62] unit decrease	Illumina [7506463] (imputed)	N
897	chr5	40972210	40972211	rs74480769	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL34	5,345 Icelandic ancestry individuals	NA	5p13.1		rs74480769-G	0.02157	3E-12		0.421923	[0.3-0.54] unit decrease	Illumina [7506463] (imputed)	N
897	chr5	40972210	40972211	rs74480769	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IGF1	5,344 Icelandic ancestry individuals	NA	5p13.1		rs74480769-G	0.02157	2E-12		0.42812	[0.31-0.55] unit decrease	Illumina [7506463] (imputed)	N
897	chr5	40972210	40972211	rs74480769	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IFNAR1	5,357 Icelandic ancestry individuals	NA	5p13.1		rs74480769-G	0.02157	4E-19		0.573511	[0.45-0.7] unit decrease	Illumina [7506463] (imputed)	N
897	chr5	40972210	40972211	rs74480769	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GCNT4	5,342 Icelandic ancestry individuals	NA	5p13.1		rs74480769-G	0.02157	4E-18		0.529946	[0.41-0.65] unit decrease	Illumina [7506463] (imputed)	N
897	chr5	40972210	40972211	rs74480769	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FRZB	5,350 Icelandic ancestry individuals	NA	5p13.1		rs74480769-G	0.02157	1E-14		0.455238	[0.34-0.57] unit decrease	Illumina [7506463] (imputed)	N
897	chr5	40972210	40972211	rs74480769	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FOLH1	5,337 Icelandic ancestry individuals	NA	5p13.1		rs74480769-G	0.02157	1E-14		0.45042	[0.34-0.57] unit decrease	Illumina [7506463] (imputed)	N
897	chr5	40972210	40972211	rs74480769	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FCER1A	5,348 Icelandic ancestry individuals	NA	5p13.1		rs74480769-G	0.02157	5E-24		0.620564	[0.5-0.74] unit decrease	Illumina [7506463] (imputed)	N
897	chr5	40972210	40972211	rs74480769	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ENTPD1	5,340 Icelandic ancestry individuals	NA	5p13.1		rs74480769-G	0.02157	7E-14		0.444595	[0.33-0.56] unit decrease	Illumina [7506463] (imputed)	N
897	chr5	40972210	40972211	rs74480769	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DSG1	5,349 Icelandic ancestry individuals	NA	5p13.1		rs74480769-G	0.02157	2E-14		0.473041	[0.35-0.59] unit decrease	Illumina [7506463] (imputed)	N
897	chr5	40972210	40972211	rs74480769	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CTRL	5,337 Icelandic ancestry individuals	NA	5p13.1		rs74480769-G	0.02157	1E-12		0.427469	[0.31-0.55] unit decrease	Illumina [7506463] (imputed)	N
897	chr5	40972210	40972211	rs74480769	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CLEC12B	5,357 Icelandic ancestry individuals	NA	5p13.1		rs74480769-G	0.02157	1E-13		0.475627	[0.35-0.6] unit decrease	Illumina [7506463] (imputed)	N
897	chr5	40972210	40972211	rs74480769	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CDK5;CDK5R1	5,339 Icelandic ancestry individuals	NA	5p13.1		rs74480769-G	0.02157	5E-12		0.40404	[0.29-0.52] unit decrease	Illumina [7506463] (imputed)	N
897	chr5	40972210	40972211	rs74480769	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CCL1	5,354 Icelandic ancestry individuals	NA	5p13.1		rs74480769-G	0.02157	1E-12		0.440958	[0.32-0.56] unit decrease	Illumina [7506463] (imputed)	N
897	chr5	40972210	40972211	rs74480769	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CA4	5,356 Icelandic ancestry individuals	NA	5p13.1		rs74480769-G	0.02157	8E-14		0.470772	[0.35-0.59] unit decrease	Illumina [7506463] (imputed)	N
897	chr5	40972210	40972211	rs74480769	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C8A;C8B;C8G	5,343 Icelandic ancestry individuals	NA	5p13.1		rs74480769-G	0.02157	2E-12		0.398762	[0.29-0.51] unit decrease	Illumina [7506463] (imputed)	N
897	chr5	40972210	40972211	rs74480769	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C7	5,359 Icelandic ancestry individuals	NA	5p13.1		rs74480769-G	0.02157	1E-98		1.30933	[1.19-1.43] unit decrease	Illumina [7506463] (imputed)	N
897	chr5	40972210	40972211	rs74480769	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C7	5,343 Icelandic ancestry individuals	NA	5p13.1		rs74480769-G	0.02157	8E-48		0.833138	[0.72-0.95] unit decrease	Illumina [7506463] (imputed)	N
897	chr5	40972210	40972211	rs74480769	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C5;C6	5,338 Icelandic ancestry individuals	NA	5p13.1		rs74480769-G	0.02157	7E-28		0.605523	[0.5-0.71] unit increase	Illumina [7506463] (imputed)	N
897	chr5	40972210	40972211	rs74480769	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C1QTNF9	5,344 Icelandic ancestry individuals	NA	5p13.1		rs74480769-G	0.02157	2E-17		0.516929	[0.4-0.64] unit decrease	Illumina [7506463] (imputed)	N
897	chr5	40972210	40972211	rs74480769	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein BCL2L10	5,355 Icelandic ancestry individuals	NA	5p13.1		rs74480769-G	0.02157	2E-13		0.47307	[0.35-0.6] unit decrease	Illumina [7506463] (imputed)	N
897	chr5	40972210	40972211	rs74480769	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein AZGP1	5,362 Icelandic ancestry individuals	NA	5p13.1		rs74480769-G	0.02157	6E-16		0.515275	[0.39-0.64] unit decrease	Illumina [7506463] (imputed)	N
897	chr5	40972210	40972211	rs74480769	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein APOM	5,345 Icelandic ancestry individuals	NA	5p13.1		rs74480769-G	0.02157	6E-12		0.415449	[0.3-0.53] unit decrease	Illumina [7506463] (imputed)	N
897	chr5	40972210	40972211	rs74480769	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein AHSA1	5,351 Icelandic ancestry individuals	NA	5p13.1		rs74480769-G	0.02157	4E-19		0.564116	[0.44-0.69] unit decrease	Illumina [7506463] (imputed)	N
897	chr5	40972210	40972211	rs74480769	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ADGRE5	5,359 Icelandic ancestry individuals	NA	5p13.1		rs74480769-G	0.02157	2E-13		0.474626	[0.35-0.6] unit decrease	Illumina [7506463] (imputed)	N
897	chr5	40972210	40972211	rs74480769	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	5p13.1	NR	rs74480769-A	0.9815625	9E-9	(LRRC74A, 8389_8_3)	0.51432437	[0.34-0.69] unit increase	Illumina [> 1000000] (imputed)	N
897	chr5	40972210	40972211	rs74480769	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	5p13.1	NR	rs74480769-A	0.9815625	9E-9	(BAMBI, 6935_123_3)	0.5223403	[0.34-0.7] unit increase	Illumina [> 1000000] (imputed)	N
897	chr5	40972210	40972211	rs74480769	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	5p13.1	NR	rs74480769-A	0.9815625	9E-24	(C7, 2888_49_2)	0.909903	[0.73-1.09] unit increase	Illumina [> 1000000] (imputed)	N
897	chr5	40972210	40972211	rs74480769	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	5p13.1	NR	rs74480769-A	0.9815625	8E-11	(ZAP70, 4476_22_2)	0.580868	[0.41-0.76] unit increase	Illumina [> 1000000] (imputed)	N
897	chr5	40972210	40972211	rs74480769	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	5p13.1	NR	rs74480769-A	0.9815625	7E-9	(RAB17, 11118_107_3)	0.519931	[0.34-0.7] unit increase	Illumina [> 1000000] (imputed)	N
897	chr5	40972210	40972211	rs74480769	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	5p13.1	NR	rs74480769-A	0.9815625	7E-10	(SKIL, 14670_1_3)	0.5597238	[0.38-0.74] unit increase	Illumina [> 1000000] (imputed)	N
897	chr5	40972210	40972211	rs74480769	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	5p13.1	NR	rs74480769-A	0.9815625	7E-10	(FRZB, 2841_13_2)	0.55674726	[0.38-0.73] unit increase	Illumina [> 1000000] (imputed)	N
897	chr5	40972210	40972211	rs74480769	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	5p13.1	NR	rs74480769-A	0.9815625	6E-9	(TNFRSF8, 2605_49_2)	0.52756536	[0.35-0.71] unit increase	Illumina [> 1000000] (imputed)	N
897	chr5	40972210	40972211	rs74480769	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	5p13.1	NR	rs74480769-A	0.9815625	6E-10	(POLR1C, 12939_1_3)	0.56311446	[0.39-0.74] unit increase	Illumina [> 1000000] (imputed)	N
897	chr5	40972210	40972211	rs74480769	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	5p13.1	NR	rs74480769-A	0.9815625	6E-10	(AHSA1, 11633_89_3)	0.5625944	[0.38-0.74] unit increase	Illumina [> 1000000] (imputed)	N
897	chr5	40972210	40972211	rs74480769	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	5p13.1	NR	rs74480769-A	0.9815625	4E-9	(IL34, 4556_10_2)	0.5346073	[0.36-0.71] unit increase	Illumina [> 1000000] (imputed)	N
897	chr5	40972210	40972211	rs74480769	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	5p13.1	NR	rs74480769-A	0.9815625	4E-9	(GCNT4, 10854_15_3)	0.5347087	[0.36-0.71] unit increase	Illumina [> 1000000] (imputed)	N
897	chr5	40972210	40972211	rs74480769	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	5p13.1	NR	rs74480769-A	0.9815625	4E-14	(FCER1A, 9254_18_3)	0.6913561	[0.51-0.87] unit increase	Illumina [> 1000000] (imputed)	N
897	chr5	40972210	40972211	rs74480769	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	5p13.1	NR	rs74480769-A	0.9815625	3E-9	(ENTPD1, 3182_38_2)	0.5277511	[0.35-0.7] unit increase	Illumina [> 1000000] (imputed)	N
897	chr5	40972210	40972211	rs74480769	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	5p13.1	NR	rs74480769-A	0.9815625	2E-9	(STX6, 10945_11_3)	0.5492771	[0.37-0.73] unit increase	Illumina [> 1000000] (imputed)	N
897	chr5	40972210	40972211	rs74480769	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	5p13.1	NR	rs74480769-A	0.9815625	2E-9	(RAD51, 2871_73_2)	0.541322	[0.36-0.72] unit increase	Illumina [> 1000000] (imputed)	N
897	chr5	40972210	40972211	rs74480769	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	5p13.1	NR	rs74480769-A	0.9815625	2E-9	(NRXN3, 9799_3_3)	0.53451115	[0.36-0.71] unit increase	Illumina [> 1000000] (imputed)	N
897	chr5	40972210	40972211	rs74480769	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	5p13.1	NR	rs74480769-A	0.9815625	2E-9	(MCEMP1, 6283_60_3)	0.5300898	[0.36-0.7] unit increase	Illumina [> 1000000] (imputed)	N
897	chr5	40972210	40972211	rs74480769	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	5p13.1	NR	rs74480769-A	0.9815625	2E-9	(C8A C8B C8G, 2429_27_4)	0.538163	[0.36-0.71] unit increase	Illumina [> 1000000] (imputed)	N
897	chr5	40972210	40972211	rs74480769	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	5p13.1	NR	rs74480769-A	0.9815625	2E-11	(CDK5 CDK5R1, 3358_51_2)	0.6122368	[0.43-0.79] unit increase	Illumina [> 1000000] (imputed)	N
897	chr5	40972210	40972211	rs74480769	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	5p13.1	NR	rs74480769-A	0.9815625	2E-10	(RAB5C, 14287_6_3)	0.57310313	[0.4-0.75] unit increase	Illumina [> 1000000] (imputed)	N
897	chr5	40972210	40972211	rs74480769	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	5p13.1	NR	rs74480769-A	0.9815625	1E-9	(FOLH1, 3218_8_2)	0.54784024	[0.37-0.72] unit increase	Illumina [> 1000000] (imputed)	N
897	chr5	40972210	40972211	rs74480769	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	5p13.1	NR	rs74480769-A	0.9815625	1E-9	(C5 C6, 4482_66_2)	0.55037796	[0.37-0.73] unit decrease	Illumina [> 1000000] (imputed)	N
897	chr5	40972210	40972211	rs74480769	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	5p13.1	NR	rs74480769-A	0.9815625	1E-9	(C1QTNF9, 6019_12_3)	0.5425759	[0.37-0.72] unit increase	Illumina [> 1000000] (imputed)	N
897	chr5	40972210	40972211	rs74480769	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	5p13.1	NR	rs74480769-A	0.9815625	1E-36	(C7, 13731_14_3)	1.1165318	[0.95-1.29] unit increase	Illumina [> 1000000] (imputed)	N
897	chr5	40972210	40972211	rs74480769	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5p13.1	C7	rs74480769-G	0.032	9E-16	(Tyrosine-protein phosphatase non-receptor type 1, PTPN1.3005.5.2)	0.59	[0.45-0.73] unit decrease	Affymetrix [10572788] (imputed)	N
897	chr5	40972210	40972211	rs74480769	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5p13.1	C7	rs74480769-G	0.032	9E-15	(Zinc-alpha-2-glycoprotein, AZGP1.9312.8.3)	0.57	[0.43-0.71] unit decrease	Affymetrix [10572788] (imputed)	N
897	chr5	40972210	40972211	rs74480769	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5p13.1	C7	rs74480769-G	0.032	9E-14	(CD97 antigen, CD97.2822.56.2)	0.55	[0.41-0.69] unit decrease	Affymetrix [10572788] (imputed)	N
897	chr5	40972210	40972211	rs74480769	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5p13.1	C7	rs74480769-G	0.032	8E-19	(Complement C1q and tumor necrosis factor-related protein 9A, C1QTNF9.6019.12.3)	0.65	[0.51-0.79] unit decrease	Affymetrix [10572788] (imputed)	N
897	chr5	40972210	40972211	rs74480769	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5p13.1	C7	rs74480769-G	0.032	8E-16	(Stabilin-2, STAB2.3399.31.2)	0.59	[0.45-0.73] unit decrease	Affymetrix [10572788] (imputed)	N
897	chr5	40972210	40972211	rs74480769	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5p13.1	C7	rs74480769-G	0.032	8E-12	(Tumor necrosis factor ligand superfamily member 8, TNFSF8.3421.54.2)	0.5	[0.36-0.64] unit decrease	Affymetrix [10572788] (imputed)	N
897	chr5	40972210	40972211	rs74480769	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5p13.1	C7	rs74480769-G	0.032	8E-12	(Secreted frizzled-related protein 3, FRZB.2841.13.2)	0.5	[0.36-0.64] unit decrease	Affymetrix [10572788] (imputed)	N
897	chr5	40972210	40972211	rs74480769	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5p13.1	C7	rs74480769-G	0.032	7E-18	(Mast cell-expressed membrane protein 1, MCEMP1.6283.60.3)	0.63	[0.49-0.77] unit decrease	Affymetrix [10572788] (imputed)	N
897	chr5	40972210	40972211	rs74480769	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5p13.1	C7	rs74480769-G	0.032	7E-15	(Bcl-2-like protein 1, BCL2L1.4423.77.2)	0.57	[0.43-0.71] unit decrease	Affymetrix [10572788] (imputed)	N
897	chr5	40972210	40972211	rs74480769	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5p13.1	C7	rs74480769-G	0.032	7E-14	(Insulin growth factor-like family member 3, IGFL3.6961.14.3)	0.55	[0.41-0.69] unit decrease	Affymetrix [10572788] (imputed)	N
897	chr5	40972210	40972211	rs74480769	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5p13.1	C7	rs74480769-G	0.032	6E-14	(Kallikrein-14, KLK14.3681.87.3)	0.55	[0.41-0.69] unit decrease	Affymetrix [10572788] (imputed)	N
897	chr5	40972210	40972211	rs74480769	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5p13.1	C7	rs74480769-G	0.032	6E-14	(Chromobox protein homolog 5, CBX5.4540.11.2)	0.55	[0.41-0.69] unit decrease	Affymetrix [10572788] (imputed)	N
897	chr5	40972210	40972211	rs74480769	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5p13.1	C7	rs74480769-G	0.032	5E-18	(Cyclin-dependent kinase 5:Cyclin-dependent kinase 5 activator 1 complex, CDK5.CDK5R1.3358.51.2)	0.63	[0.49-0.77] unit decrease	Affymetrix [10572788] (imputed)	N
897	chr5	40972210	40972211	rs74480769	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5p13.1	C7	rs74480769-G	0.032	5E-16	(Uncharacterized protein C10orf35, C10orf35.8220.15.3)	0.59	[0.45-0.73] unit decrease	Affymetrix [10572788] (imputed)	N
897	chr5	40972210	40972211	rs74480769	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5p13.1	C7	rs74480769-G	0.032	5E-14	(Tumor necrosis factor receptor superfamily member 3, LTBR.2636.10.2)	0.55	[0.41-0.69] unit decrease	Affymetrix [10572788] (imputed)	N
897	chr5	40972210	40972211	rs74480769	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5p13.1	C7	rs74480769-G	0.032	5E-13	(Oncostatin-M, OSM.2693.20.3)	0.53	[0.39-0.67] unit decrease	Affymetrix [10572788] (imputed)	N
897	chr5	40972210	40972211	rs74480769	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5p13.1	C7	rs74480769-G	0.032	5E-12	(Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit alpha, PIK3C2A.14028.22.3)	0.51	[0.37-0.65] unit decrease	Affymetrix [10572788] (imputed)	N
897	chr5	40972210	40972211	rs74480769	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5p13.1	C7	rs74480769-G	0.032	4E-17	(Glutamate carboxypeptidase 2, FOLH1.3218.8.2)	0.61	[0.47-0.75] unit decrease	Affymetrix [10572788] (imputed)	N
897	chr5	40972210	40972211	rs74480769	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5p13.1	C7	rs74480769-G	0.032	4E-17	(Epididymal-specific lipocalin-10, LCN10.13007.66.3)	0.61	[0.47-0.75] unit decrease	Affymetrix [10572788] (imputed)	N
897	chr5	40972210	40972211	rs74480769	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5p13.1	C7	rs74480769-G	0.032	4E-16	(Tropomyosin beta chain, TPM2.4472.5.2)	0.59	[0.45-0.73] unit decrease	Affymetrix [10572788] (imputed)	N
897	chr5	40972210	40972211	rs74480769	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5p13.1	C7	rs74480769-G	0.032	4E-13	(Kinesin-like protein KIF16B, KIF16B.11672.17.3)	0.53	[0.39-0.67] unit decrease	Affymetrix [10572788] (imputed)	N
897	chr5	40972210	40972211	rs74480769	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5p13.1	C7	rs74480769-G	0.032	4E-13	(ERO1-like protein alpha, ERO1L.7060.2.3)	0.53	[0.39-0.67] unit decrease	Affymetrix [10572788] (imputed)	N
897	chr5	40972210	40972211	rs74480769	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5p13.1	C7	rs74480769-G	0.032	4E-13	(Cytochrome c oxidase assembly factor 3 homolog, mitochondrial, COA3.7888.58.3)	0.53	[0.39-0.67] unit decrease	Affymetrix [10572788] (imputed)	N
897	chr5	40972210	40972211	rs74480769	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5p13.1	C7	rs74480769-G	0.032	4E-13	(Cellular retinoic acid-binding protein 1, CRABP1.11967.23.3)	0.53	[0.39-0.67] unit decrease	Affymetrix [10572788] (imputed)	N
897	chr5	40972210	40972211	rs74480769	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5p13.1	C7	rs74480769-G	0.032	4E-12	(Kallikrein-6, KLK6.3450.4.2)	0.51	[0.37-0.65] unit decrease	Affymetrix [10572788] (imputed)	N
897	chr5	40972210	40972211	rs74480769	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5p13.1	C7	rs74480769-G	0.032	4E-12	(Guanylate-binding protein 6, GBP6.7818.101.3)	0.51	[0.37-0.65] unit decrease	Affymetrix [10572788] (imputed)	N
897	chr5	40972210	40972211	rs74480769	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5p13.1	C7	rs74480769-G	0.032	3E-15	(Desmoglein-1, DSG1.2976.58.2)	0.58	[0.44-0.72] unit decrease	Affymetrix [10572788] (imputed)	N
897	chr5	40972210	40972211	rs74480769	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5p13.1	C7	rs74480769-G	0.032	3E-15	(Carbonic anhydrase 4, CA4.3177.49.2)	0.58	[0.44-0.72] unit decrease	Affymetrix [10572788] (imputed)	N
897	chr5	40972210	40972211	rs74480769	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5p13.1	C7	rs74480769-G	0.032	3E-13	(Kallikrein-12, KLK12.3199.54.2)	0.54	[0.4-0.68] unit decrease	Affymetrix [10572788] (imputed)	N
897	chr5	40972210	40972211	rs74480769	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5p13.1	C7	rs74480769-G	0.032	3E-12	(Insulin-like growth factor I, IGF1.2952.75.2)	0.51	[0.37-0.65] unit decrease	Affymetrix [10572788] (imputed)	N
897	chr5	40972210	40972211	rs74480769	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5p13.1	C7	rs74480769-G	0.032	3E-12	(Heterogeneous nuclear ribonucleoprotein Q, SYNCRIP.4224.7.2)	0.51	[0.37-0.65] unit decrease	Affymetrix [10572788] (imputed)	N
897	chr5	40972210	40972211	rs74480769	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5p13.1	C7	rs74480769-G	0.032	3E-12	(DNA repair protein RAD51 homolog 1, RAD51.2871.73.2)	0.51	[0.37-0.65] unit decrease	Affymetrix [10572788] (imputed)	N
897	chr5	40972210	40972211	rs74480769	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5p13.1	C7	rs74480769-G	0.032	3E-12	(Cyclin-dependent kinase 8:Cyclin-C complex, CDK8.CCNC.3359.11.2)	0.51	[0.37-0.65] unit decrease	Affymetrix [10572788] (imputed)	N
897	chr5	40972210	40972211	rs74480769	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5p13.1	C7	rs74480769-G	0.032	2E-18	(Hexokinase-1, HK1.13131.5.3)	0.64	[0.5-0.78] unit decrease	Affymetrix [10572788] (imputed)	N
897	chr5	40972210	40972211	rs74480769	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5p13.1	C7	rs74480769-G	0.032	2E-17	(Tyrosine-protein kinase ZAP-70, ZAP70.4476.22.2)	0.62	[0.48-0.76] unit decrease	Affymetrix [10572788] (imputed)	N
897	chr5	40972210	40972211	rs74480769	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5p13.1	C7	rs74480769-G	0.032	2E-17	(Histone acetyltransferase KAT6A, KAT6A.2865.77.2)	0.62	[0.48-0.76] unit decrease	Affymetrix [10572788] (imputed)	N
897	chr5	40972210	40972211	rs74480769	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5p13.1	C7	rs74480769-G	0.032	2E-16	(Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform, PIK3CG.3391.10.2)	0.6	[0.46-0.74] unit decrease	Affymetrix [10572788] (imputed)	N
897	chr5	40972210	40972211	rs74480769	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5p13.1	C7	rs74480769-G	0.032	2E-15	(Regulator of G-protein signaling 8, RGS8.11666.72.3)	0.58	[0.44-0.72] unit decrease	Affymetrix [10572788] (imputed)	N
897	chr5	40972210	40972211	rs74480769	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5p13.1	C7	rs74480769-G	0.032	2E-15	(Interleukin-34, IL34.4556.10.2)	0.58	[0.44-0.72] unit decrease	Affymetrix [10572788] (imputed)	N
897	chr5	40972210	40972211	rs74480769	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5p13.1	C7	rs74480769-G	0.032	2E-15	(Cytochrome c oxidase subunit 4 isoform 2, mitochondrial, COX4I2.7850.1.3)	0.58	[0.44-0.72] unit decrease	Affymetrix [10572788] (imputed)	N
897	chr5	40972210	40972211	rs74480769	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5p13.1	C7	rs74480769-G	0.032	2E-15	(Alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2, ST6GALNAC2.7823.22.3)	0.58	[0.44-0.72] unit decrease	Affymetrix [10572788] (imputed)	N
897	chr5	40972210	40972211	rs74480769	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5p13.1	C7	rs74480769-G	0.032	2E-14	(Zinc finger protein 276, ZNF276.14692.3.3)	0.56	[0.42-0.7] unit decrease	Affymetrix [10572788] (imputed)	N
897	chr5	40972210	40972211	rs74480769	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5p13.1	C7	rs74480769-G	0.032	2E-13	(Testis-expressed sequence 29 protein, TEX29.13500.9.3)	0.54	[0.4-0.68] unit decrease	Affymetrix [10572788] (imputed)	N
897	chr5	40972210	40972211	rs74480769	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5p13.1	C7	rs74480769-G	0.032	2E-13	(Glycerol-3-phosphate dehydrogenase 1-like protein, GPD1L.12420.10.3)	0.54	[0.4-0.68] unit decrease	Affymetrix [10572788] (imputed)	N
897	chr5	40972210	40972211	rs74480769	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5p13.1	C7	rs74480769-G	0.032	2E-13	(Complement component C8, C8A.C8B.C8G.2429.27.4)	0.54	[0.4-0.68] unit decrease	Affymetrix [10572788] (imputed)	N
897	chr5	40972210	40972211	rs74480769	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5p13.1	C7	rs74480769-G	0.032	2E-12	(Uroplakin-3b-like protein, UPK3BL.6633.43.3)	0.52	[0.38-0.66] unit decrease	Affymetrix [10572788] (imputed)	N
897	chr5	40972210	40972211	rs74480769	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5p13.1	C7	rs74480769-G	0.032	2E-12	(SLAM family member 7, SLAMF7.7882.31.3)	0.51	[0.37-0.65] unit decrease	Affymetrix [10572788] (imputed)	N
897	chr5	40972210	40972211	rs74480769	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5p13.1	C7	rs74480769-G	0.032	2E-12	(Receptor-type tyrosine-protein kinase FLT3, FLT3.3437.80.3)	0.52	[0.38-0.66] unit decrease	Affymetrix [10572788] (imputed)	N
897	chr5	40972210	40972211	rs74480769	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5p13.1	C7	rs74480769-G	0.032	2E-12	(RNA-binding protein 24, RBM24.11380.84.3)	0.52	[0.38-0.66] unit decrease	Affymetrix [10572788] (imputed)	N
897	chr5	40972210	40972211	rs74480769	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5p13.1	C7	rs74480769-G	0.032	2E-12	(Interleukin-37, IL37.2723.9.2)	0.52	[0.38-0.66] unit decrease	Affymetrix [10572788] (imputed)	N
897	chr5	40972210	40972211	rs74480769	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5p13.1	C7	rs74480769-G	0.032	2E-12	(Carbonic anhydrase-related protein 10, CA10.3289.19.2)	0.52	[0.38-0.66] unit decrease	Affymetrix [10572788] (imputed)	N
897	chr5	40972210	40972211	rs74480769	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5p13.1	C7	rs74480769-G	0.032	2E-12	(Alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1, ST6GALNAC1.7867.154.3)	0.52	[0.38-0.66] unit decrease	Affymetrix [10572788] (imputed)	N
897	chr5	40972210	40972211	rs74480769	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5p13.1	C7	rs74480769-G	0.032	1E-14	(Ectonucleoside triphosphate diphosphohydrolase 1, ENTPD1.3182.38.2)	0.57	[0.43-0.71] unit decrease	Affymetrix [10572788] (imputed)	N
897	chr5	40972210	40972211	rs74480769	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5p13.1	C7	rs74480769-G	0.032	1E-14	(Beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 4, GCNT4.10854.15.3)	0.56	[0.42-0.7] unit decrease	Affymetrix [10572788] (imputed)	N
897	chr5	40972210	40972211	rs74480769	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5p13.1	C7	rs74480769-G	0.032	1E-13	(Protocadherin beta-4, PCDHB4.10522.167.3)	0.54	[0.4-0.68] unit decrease	Affymetrix [10572788] (imputed)	N
897	chr5	40972210	40972211	rs74480769	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5p13.1	C7	rs74480769-G	0.032	1E-13	(DNA-directed RNA polymerases I and III subunit RPAC1, POLR1C.12939.1.3)	0.54	[0.4-0.68] unit decrease	Affymetrix [10572788] (imputed)	N
897	chr5	40972210	40972211	rs74480769	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5p13.1	C7	rs74480769-G	0.032	1E-11	(Oxysterols receptor LXR-beta, NR1H2.9016.12.3)	0.5	[0.36-0.64] unit decrease	Affymetrix [10572788] (imputed)	N
897	chr5	40975756	40975757	rs71623871	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C7	5,343 Icelandic ancestry individuals	NA	5p13.1		rs71623871-A	0.27	3E-23		0.184927	[0.15-0.22] unit decrease	Illumina [7506463] (imputed)	N
897	chr5	40982030	40982031	rs10473230	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	5p13.1	C7, RP11-301A5.2	rs10473230-C	0.1599598	4E-12	(EA, Complement component C7)	0.4058	[0.29-0.52] unit increase	Affymetrix [509946]	N
897	chr5	40983090	40983091	rs2053881	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C7	5,359 Icelandic ancestry individuals	NA	5p13.1		rs2053881-G	0.2731	2E-48		0.293249	[0.25-0.33] unit decrease	Illumina [7506463] (imputed)	N
897	chr5	40983435	40983436	rs7732104	25656473	de With SA	2015-02-05	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of lymphoblast cell viability after clozapine exposure.	Clozapine-induced cytotoxicity	90 European ancestry lymphoblast cell lines	NA	5p13.1	C7	rs7732104-?	NR	9E-6	(AUC)			NR [2092490]	N
898	chr5	41030721	41030722	rs67702993	32724131	Li QS	2020-07-28	Sci Rep	Genome-wide association study and polygenic risk score analysis of esketamine treatment response.	Response to esketamine in treatment resistant depression	255 European ancestry individuals	NA	5p13.1	NR	rs67702993-?		3E-6		7.7028	[4.53-10.88] unit decrease	NR [NR] (imputed)	N
898	chr5	41051467	41051468	rs138832179	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	5p13.1	NR	rs138832179-?	NR	4E-8				Illumina [7760689] (imputed)	N
898	chr5	41126468	41126469	rs11743598	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5p13.1	FLJ40243	rs11743598-?	NR	7E-6	(threonine)	0.1716747	[0.097-0.246] unit decrease	Affymetrix [at least 2500000] (imputed)	N
899	chr5	41234045	41234046	rs7443270	23149075	Aslibekyan S	2012-11-10	Nutr Metab Cardiovasc Dis	Preliminary evidence of genetic determinants of adiponectin response to fenofibrate in the Genetics of Lipid Lowering Drugs and Diet Network.	Response to fenofibrate (adiponectin levels)	793 European ancestry individuals	NA	5p13.1	C6	rs7443270-?	NR	5E-6	(Response)	0.04	[0.022-0.058] ng/dL increase	Affymetrix [2543887] (imputed)	N
899	chr5	41250720	41250721	rs749629	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5p13.1	PLCXD3	rs749629-?	NR	9E-6	(threonine)	0.16394803	[0.092-0.236] unit decrease	Affymetrix [at least 2500000] (imputed)	N
899	chr5	41263063	41263064	rs445118	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C7	5,343 Icelandic ancestry individuals	NA	5p13.1		rs445118-A	0.4414	5E-24		0.170717	[0.14-0.2] unit increase	Illumina [7506463] (imputed)	N
899	chr5	41263090	41263091	rs429017	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C7	5,359 Icelandic ancestry individuals	NA	5p13.1		rs429017-A	0.3017	6E-62		0.323135	[0.29-0.36] unit increase	Illumina [7506463] (imputed)	N
899	chr5	41263090	41263091	rs429017	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	5p13.1	C6	rs429017-A	0.2527919	9E-18	(EA, Complement component C7)	0.4333	[0.34-0.53] unit increase	Affymetrix [509946]	N
899	chr5	41265863	41265864	rs2910644	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	5p13.1	C6	rs2910644-?		2E-8				Affymetrix, Illumina [NR] (imputed)	N
900	chr5	41308161	41308162	rs320615	34698592	Yang J	2021-10-26	Stress	Genome-wide association studies of stress score in a Korean Cohort.	High physical stress	8,104 Korean ancestry individuals	NA	5p13.1		rs320615-C	NR	9E-6		1.85	[1.41-2.42]	Affymetrix [320700]	N
900	chr5	41409170	41409171	rs115260650	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	5p13.1	NR	rs115260650-C	NR	1E-13		0.0572	[0.042-0.072] unit decrease	Affymetrix [9000000] (imputed)	N
901	chr5	41464840	41464841	rs72758321	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	5p13.1	NR	rs72758321-G	NR	1E-14		0.0448	[0.033-0.056] unit increase	Affymetrix [9000000] (imputed)	N
901	chr5	41546958	41546959	rs822127	27802415	Salvi E	2016-10-31	Hypertension	Genome-Wide and Gene-Based Meta-Analyses Identify Novel Loci Influencing Blood Pressure Response to Hydrochlorothiazide.	Diastolic blood pressure response to hydrochlorothiazide in hypertension	1,739 European ancestry individuals	430 African American individuals	5p13.1	PLCXD3, OXTC1	rs822127-A	0.37	7E-6	(EA)	0.6	[NR] mmHg decrease	Affymetrix, Illumina [up to 2500000] (imputed)	N
902	chr5	41654245	41654246	rs72761817	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar II disorder	3,421 European ancestry cases, 31,358 European ancestry controls	NA	5p13.1	NR	rs72761817-G	0.025000000000000022	3E-7		1.5387928	[NR]	NR [9372253] (imputed)	N
903	chr5	41702896	41702897	rs585188	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	3-Hydroxybutyrate levels	113,594 European ancestry individuals	NA	5p13.1		rs585188-G	0.744696	9E-21		0.0439476	[0.035-0.053] unit increase	NR [11722792] (imputed)	N
903	chr5	41743676	41743677	rs13189192	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	5p13.1		rs13189192-?	NR	1E-14		0.0229165	[0.017-0.029] unit decrease	Affymetrix [20259828] (imputed)	N
903	chr5	41773729	41773730	rs7712274	30476138	Benonisdottir S	2019-04-01	Hum Mol Genet	Sequence variants associating with urinary biomarkers.	Ketonuria (moderate to severe)	21,803 Icelandic ancestry cases, 95,568 Icelandic ancestry controls (includes non-array genotyped, whole-genome imputed individuals)	NA	5p13.1	OXCT1	rs7712274-T	0.7723	1E-15		1.1337868	[1.1-1.16]	Illumina [32500000] (imputed)	N
903	chr5	41773729	41773730	rs7712274	30476138	Benonisdottir S	2019-04-01	Hum Mol Genet	Sequence variants associating with urinary biomarkers.	Ketonuria (mild)	19,327 Icelandic ancestry cases, 95,568 Icelandic ancestry controls (includes non-array genotyped, whole-genome imputed individuals)	NA	5p13.1	OXCT1	rs7712274-T	0.7723	2E-6		1.0775862	[1.04-1.11]	Illumina [32500000] (imputed)	N
903	chr5	41773729	41773730	rs7712274	30476138	Benonisdottir S	2019-04-01	Hum Mol Genet	Sequence variants associating with urinary biomarkers.	Ketonuria	41,130 Icelandic ancestry cases, 95,568 Icelandic ancestry controls (includes non-array genotyped, whole-genome imputed individuals)	NA	5p13.1	OXCT1	rs7712274-T	0.77228	2E-16		1.1061947	[1.08-1.14]	Illumina [32500000] (imputed)	N
903	chr5	41799013	41799014	rs72746946	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	5p13.1	NR	rs72746946-T	NR	7E-10		0.067	[0.046-0.088] unit increase	Affymetrix [9000000] (imputed)	N
904	chr5	41868990	41868991	rs11745373	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Acetone levels	115,079 European ancestry individuals	NA	5p13.1		rs11745373-T	0.744851	5E-46		0.0672707	[0.058-0.077] unit increase	NR [11722792] (imputed)	N
904	chr5	41868990	41868991	rs11745373	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Acetoacetate levels	115,079 European ancestry individuals	NA	5p13.1		rs11745373-T	0.744851	2E-28		0.0520298	[0.043-0.061] unit increase	NR [11722792] (imputed)	N
905	chr5	41951147	41951148	rs62361682	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5p13.1		rs62361682-?	NR	4E-8				NR [~ 8900000] (imputed)	N
905	chr5	42052964	42052965	rs138592693	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial squamous cell lung carcinoma	367 European ancestry cases, 31,563 European ancestry controls	NA	5p13.1	NR	rs138592693-T	0.011	2E-6		4.63	[2.44-8.76]	Illumina [7959153] (imputed)	N
905	chr5	42059361	42059362	rs185624266	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	5p13.1	MTHFD2P6	rs185624266-C	0.993	3E-6		0.2349	[0.14-0.33] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
906	chr5	42170877	42170878	rs192388487	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial squamous cell lung carcinoma	367 European ancestry cases, 31,563 European ancestry controls	NA	5p13.1	NR	rs192388487-G	0.011	2E-7		5.2	[2.79-9.69]	Illumina [7959153] (imputed)	N
906	chr5	42194858	42194859	rs16872401	29650764	McDonough CW	2018-04-01	Circ Genom Precis Med	Genetic Variants Influencing Plasma Renin Activity in Hypertensive Patients From the PEAR Study (Pharmacogenomic Evaluation of Antihypertensive Responses).	Plasma renin activity levels	461 European ancestry individuals, 297 African American ancestry individuals	150 European ancestry individuals	5p13.1	GHR	rs16872401-C	0.26	6E-6	(AA)	0.31	[0.17-0.45] unit decrease	Illumina [up to 1000000] (imputed)	N
907	chr5	42215811	42215812	rs10035253	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	5p13.1		rs10035253-?	NR	3E-21		0.0202138	[0.016-0.025] unit increase	Affymetrix [20259828] (imputed)	N
907	chr5	42284955	42284956	rs150007688	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial squamous cell lung carcinoma	367 European ancestry cases, 31,563 European ancestry controls	NA	5p13.1	NR	rs150007688-C	0.013	8E-7		4.38	[2.43-7.91]	Illumina [7959153] (imputed)	N
907	chr5	42288592	42288593	rs11748684	23006423	Niu N	2012-09-24	BMC Cancer	Genetic association with overall survival of taxane-treated lung cancer patients - a genome-wide association study in human lymphoblastoid cell lines followed by a clinical association study.	Response to taxane treatment (docetaxel)	96 African American lymphoblastoid cell lines, 96 European ancestry lymphoblastoid cell lines, 96 Han Chinese ancestry lymphoblastoid cell lines	NA	5p13.1	GHR	rs11748684-?	NR	3E-6				Affymetrix, Illumina [~ 1300000]	N
908	chr5	42373979	42373980	rs114546810	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	5p13.1	NR	rs114546810-A	NR	2E-19		0.05	[0.039-0.061] unit increase	Affymetrix [9000000] (imputed)	N
908	chr5	42375242	42375243	rs979233	18204098	Hom G	2008-01-20	N Engl J Med	Association of systemic lupus erythematosus with C8orf13-BLK and ITGAM-ITGAX.	Systemic lupus erythematosus	1,311 European ancestry cases, 3,340 European ancestry controls	793 European ancestry cases, 857 European ancestry controls	5p13.1	GHR	rs979233-T	0.46	4E-6				Illumina [502033]	N
908	chr5	42433234	42433235	rs62370608	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	5p13.1	NR	rs62370608-C	NR	2E-9		0.0584	[0.039-0.077] unit decrease	Affymetrix [9000000] (imputed)	N
908	chr5	42436915	42436916	rs17574650	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	5p13.1	GHR	rs17574650-A	0.88515625	1E-13	(GHR, 2948_58_2)	0.27494448	[0.2-0.35] unit increase	Illumina [> 1000000] (imputed)	N
908	chr5	42438912	42438913	rs150037323	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial squamous cell lung carcinoma	367 European ancestry cases, 31,563 European ancestry controls	NA	5p13.1	GHR	rs150037323-C	0.015	9E-6		3.77	[2.10-6.79]	Illumina [7959153] (imputed)	N
909	chr5	42473554	42473555	rs13188386	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5p13.1		rs13188386-?	NR	4E-21				NR [~ 8900000] (imputed)	N
909	chr5	42473554	42473555	rs13188386	19084217	Benyamin B	2008-12-17	Am J Hum Genet	Variants in TF and HFE explain approximately 40% of genetic variation in serum-transferrin levels.	Iron status biomarkers	459 European ancestry twin pairs	NA	5p13.1	GHR	rs13188386-?	NR	8E-6	(transferrin saturation)			Illumina [315887]	N
909	chr5	42482651	42482652	rs13170529	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	5p13.1		rs13170529-?	NR	3E-8				Affymetrix [NR] (imputed)	N
909	chr5	42506562	42506563	rs114437310	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	5p12	NR	rs114437310-A	NR	4E-11		0.0632	[0.044-0.082] unit increase	Affymetrix [9000000] (imputed)	N
909	chr5	42521326	42521327	rs13189275	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	5p12		rs13189275-?	NR	3E-24				NR [~ 8900000] (imputed)	N
909	chr5	42525351	42525352	rs11741390	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	5p12	GHR	rs11741390-C	0.534443	4E-28		0.0204301	[0.017-0.024] unit decrease	NR [13737936] (imputed)	N
909	chr5	42525351	42525352	rs11741390	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	5p12		rs11741390-?	NR	4E-29		0.0225073	[0.018-0.027] unit decrease	Affymetrix [20259828] (imputed)	N
909	chr5	42590479	42590480	rs6881929	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	5p12	NR	rs6881929-T	0.76743	5E-8		0.00508543	[0.0031-0.0071] unit increase	Affymetrix [16582909] (imputed)	N
910	chr5	42633441	42633442	rs13166851	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Myringotomy	4,138 European ancestry cases, 85,089 European ancestry controls	NA	5p12	NR	rs13166851-?	NR	8E-6		0.5211	[0.28-0.76] unit increase	Illumina [at least 560000] (imputed)	N
910	chr5	42641065	42641066	rs73087475	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	5p12	GHR	rs73087475-T	0.9077	3E-18		0.029	[0.023-0.035] unit decrease	Affymetrix [18391927] (imputed)	N
910	chr5	42641283	42641284	rs73751227	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	5p12	GHR	rs73751227-T	NR	2E-10		0.0220051	[0.015-0.029] unit increase	Affymetrix [323123] (imputed)	N
910	chr5	42647676	42647676	rs36110641	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	5p12		rs36110641-?	NR	2E-12		0.0192149	[0.014-0.025] unit decrease	Affymetrix [20259828] (imputed)	N
910	chr5	42684955	42684956	rs34742008	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5p12		rs34742008-?	NR	3E-50				NR [~ 8900000] (imputed)	N
910	chr5	42687628	42687629	rs55681913	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GHR	5,364 Icelandic ancestry individuals	NA	5p12		rs55681913-C	0.1057	2E-21		0.278481	[0.22-0.34] unit decrease	Illumina [7506463] (imputed)	N
910	chr5	42697767	42697768	rs4637559	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	5p12		rs4637559-?	NR	9E-12		0.0153008	[0.011-0.02] unit increase	Affymetrix [20259828] (imputed)	N
910	chr5	42713472	42713473	rs33972388	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	5p12		rs33972388-T	0.550025	4E-12		0.0189246	[0.014-0.024] unit decrease	Illumina [13479924] (imputed)	N
910	chr5	42717991	42717992	rs2973015	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	5p12		rs2973015-G	NR	5E-53		0.0196	[0.017-0.022] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
910	chr5	42719238	42719239	rs6180	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	5p12	GHR	rs6180-A	0.39	8E-6		0.018	[0.0062-0.0298] unit increase	Affymetrix, Illumina [2704730] (imputed)	N
910	chr5	42723789	42723790	rs2973018	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	5p12		rs2973018-T	0.551499	4E-22		0.0194954	[0.016-0.023] unit decrease	Illumina [13479295] (imputed)	N
910	chr5	42724293	42724294	rs62372052	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	5p12	GHR	rs62372052-A	0.8897	8E-40		0.0399	[0.034-0.046] unit decrease	Affymetrix [18391927] (imputed)	N
910	chr5	42724293	42724294	rs62372052	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	5p12	NR	rs62372052-?	NR	7E-8	(female)	0.2086	[0.13-0.28] unit increase	Affymetrix [7794483] (imputed)	N
910	chr5	42724293	42724294	rs62372052	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	5p12	NR	rs62372052-?	NR	2E-7	(male)	0.29104	[0.18-0.4] unit increase	Affymetrix [7794483] (imputed)	N
910	chr5	42724293	42724294	rs62372052	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	5p12	NR	rs62372052-?	NR	1E-12		0.24978	[0.18-0.32] unit increase	Affymetrix [7794483] (imputed)	N
910	chr5	42724293	42724294	rs62372052	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	5p12	GHR	rs62372052-A	0.8949	4E-8		0.0607	[0.039-0.082] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
910	chr5	42724517	42724518	rs1345825	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	5p12		rs1345825-C	NR	2E-22		0.0168	[0.013-0.02] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
911	chr5	42731771	42731772	rs2972770	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	5p12	GHR, CCDC152	rs2972770-?	NR	2E-24		0.029252695	[0.024-0.035] unit decrease	Illumina [27896057] (imputed)	N
911	chr5	42756121	42756121	rs35352645	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	5p12		rs35352645-?	NR	1E-11		0.017085	[0.012-0.022] unit increase	Affymetrix [20259828] (imputed)	N
911	chr5	42775784	42775785	rs71627555	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Myringotomy	4,138 European ancestry cases, 85,089 European ancestry controls	NA	5p12	NR	rs71627555-?	NR	2E-6		0.5135	[0.29-0.74] unit decrease	Illumina [at least 560000] (imputed)	N
911	chr5	42807423	42807424	rs230820	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	5p12	SEPP1	rs230820-A	NR	1E-13		0.0228851	[0.017-0.029] unit decrease	Affymetrix [323123] (imputed)	N
911	chr5	42822944	42822945	rs146689548	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5p12		rs146689548-?	NR	8E-11				NR [~ 8900000] (imputed)	N
911	chr5	42827220	42827221	rs7703289	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PRSS8	5,356 Icelandic ancestry individuals	NA	5p12		rs7703289-T	0.2509	7E-12		0.143512	[0.1-0.18] unit decrease	Illumina [7506463] (imputed)	N
911	chr5	42832323	42832324	rs62370948	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	5p12	NR	rs62370948-T	NR	2E-10		0.0605	[0.042-0.079] unit decrease	Affymetrix [9000000] (imputed)	N
911	chr5	42847865	42847866	rs62372061	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	5p12	NR	rs62372061-T	NR	2E-9		0.0244	[0.016-0.032] unit decrease	Affymetrix [9000000] (imputed)	N
911	chr5	42847865	42847866	rs62372061	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	5p12	NR	rs62372061-T	NR	1E-46		0.0582	[0.05-0.066] unit increase	Affymetrix [9000000] (imputed)	N
911	chr5	42847865	42847866	rs62372061	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	5p12	NR	rs62372061-T	0.0965544	9E-10		0.100226	[0.068-0.132] unit increase	Affymetrix [21375087] (imputed)	N
912	chr5	42918831	42918832	rs140614282	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-10 levels	7,681 Finnish ancestry individuals	NA	5p12	NR	rs140614282-G		1E-6		0.7587	[0.44-1.07] SD units increase	NR [10700000] (imputed)	N
912	chr5	42921700	42921701	rs6882380	34356046	Oluwafemi OO	2021-07-01	Genes (Basel)	Genome-Wide Association Studies of Conotruncal Heart Defects with Normally Related Great Vessels in the United States.	Conotruncal heart defects with normally related great vessels (without 22q.11.2 deletion syndrome)	294 European ancestry cases, 2,976 European ancestry controls, 641 trios	NA	5p12		rs6882380-?	NR	1E-6				Illumina [3311160] (imputed)	N
912	chr5	42949634	42949635	rs78310016	32126890	Ter Hark SE	2020-03-04	J Psychopharmacol	A new genetic locus for antipsychotic-induced weight gain: A genome-wide study of first-episode psychosis patients using amisulpride (from the OPTiMiSE cohort).	Weight gain in amisulpride-treated first-episode psychosis	184 European ancestry individuals, 9 African ancestry individuals, 6 Hispanic/Latin American individuals, 3 South Asian ancestry individuals, 2 East Asian ancestry individuals, 2 individuals	NA	5p12	CTD-2201E18.1	rs78310016-G	0.0726	4E-8		1.052	NR unit increase	Illumina [4533042] (imputed)	N
912	chr5	42955987	42955988	rs62372132	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	5p12	NR	rs62372132-?	NR	5E-9				Illumina [7760689] (imputed)	N
912	chr5	42987921	42987922	rs35137321	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	5p12	NR	rs35137321-?	NR	6E-7		4.984	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
913	chr5	42992900	42992901	rs78710277	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	5p12	NR	rs78710277-T	0.059	4E-6	(IFNalpha_ABC_of_CD56dimCD16p)			Illumina [5084123] (imputed)	N
913	chr5	43022763	43022764	rs6886261	34356046	Oluwafemi OO	2021-07-01	Genes (Basel)	Genome-Wide Association Studies of Conotruncal Heart Defects with Normally Related Great Vessels in the United States.	Conotruncal heart defects with normally related great vessels (without 22q.11.2 deletion syndrome)	294 European ancestry cases, 2,976 European ancestry controls, 641 trios	NA	5p12		rs6886261-?	NR	2E-7				Illumina [3311160] (imputed)	N
913	chr5	43022763	43022764	rs6886261	28468790	Agopian AJ	2017-06-01	Circ Cardiovasc Genet	Genome-Wide Association Studies and Meta-Analyses for Congenital Heart Defects.	Conotruncal heart defects (inherited effects)	483 European ancestry trios, 406 European ancestry cases, 2,976 European ancestry controls, 355 European and other ancestry trios, 187 non-European ancestry trios.	NA	5p12	LOC648987	rs6886261-?	NR	2E-7		1.781221	[1.434992-2.210987]	Illumina [at least 4756722] (imputed)	N
913	chr5	43050759	43050760	rs72746773	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5p12		rs72746773-?	NR	8E-9				NR [~ 8900000] (imputed)	N
913	chr5	43073530	43073531	rs67276929	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	5p12	ZNF131	rs67276929-T	0.220421	4E-11		0.0172929	[0.012-0.023] unit increase	Affymetrix [93095623] (imputed)	N
913	chr5	43073530	43073531	rs67276929	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	5p12	NR	rs67276929-T	0.221868	2E-11		0.016325	[0.012-0.021] SD unit increase	Affymetrix, Illumina [50282193] (imputed)	N
913	chr5	43107410	43107411	rs72748864	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	5p12	NR	rs72748864-G	NR	6E-13		0.0481	[0.035-0.061] unit increase	Affymetrix [9000000] (imputed)	N
913	chr5	43110665	43110666	rs62367758	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 8, orbital inclination due to vertical and horizontal position of exocanthion)	2,187 European ancestry individuals	NA	5p12	NR	rs62367758-A	0.1855	1E-7		0.2094	[0.13-0.29] unit decrease	Illumina [34985077] (imputed)	N
913	chr5	43110854	43110855	rs6451675	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	5p12	NA	rs6451675-C	0.3243	3E-14		0.014	[0.01-0.018] unit decrease	NR [~ 27400000] (imputed)	N
913	chr5	43116829	43116830	rs1532331	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	5p12	ZNF131, GHR	rs1532331-G	0.32	4E-9		0.03	[0.02-0.04] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
914	chr5	43124687	43124688	rs782971	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	5p12	NA	rs782971-A	0.7534	4E-13		0.0134	[0.0099-0.0169] unit decrease	NR [~ 27400000] (imputed)	N
914	chr5	43124687	43124688	rs782971	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	5p12	ZNF131	rs782971-G	0.259	9E-6	(EA, women)	0.02	[0.011-0.029] kg/m2 increase	Affymetrix, Illumina [2550021]	N
914	chr5	43124928	43124929	rs11745810	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	5p12	NR	rs11745810-G	NR	3E-9		0.027	[0.018-0.036] unit decrease	Affymetrix [9000000] (imputed)	N
914	chr5	43134509	43134510	rs512921	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	5p12	NR	rs512921-?	NR	2E-11				Affymetrix [~ 8270000] (imputed)	N
914	chr5	43152215	43152216	rs13176429	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	5p12	NR	rs13176429-?	NR	5E-14				Affymetrix [~ 8270000] (imputed)	N
914	chr5	43152215	43152216	rs13176429	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	5p12		rs13176429-?	NR	1E-14				NR [~ 8900000] (imputed)	N
914	chr5	43161350	43161351	rs71627581	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	5p12		rs71627581-G	0.889	2E-9		0.019	[0.013-0.025] unit increase	Affymetrix [up to 90000000] (imputed)	N
914	chr5	43162607	43162608	rs10941611	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	5p12		rs10941611-C	NR	1E-8		0.0144	[0.0095-0.0193] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
914	chr5	43167273	43167274	rs782988	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	5p12	Intergenic	rs782988-A	0.8077	6E-9	(MTAG)	0.0097	[0.0064-0.013] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
914	chr5	43190646	43190647	rs35375873	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	5p12	NR	rs35375873-C	0.11	8E-17		0.0155526	[0.012-0.019] unit decrease	NR [9732723] (imputed)	N
914	chr5	43190646	43190647	rs35375873	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	5p12	NR	rs35375873-C	0.11	3E-11		0.02701025	[0.019-0.035] unit decrease	NR [~ 10000000] (imputed)	N
914	chr5	43190646	43190647	rs35375873	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	5p12	NR	rs35375873-C	0.109	1E-10		0.0158053	[0.011-0.021] unit increase	NR [9732723] (imputed)	N
914	chr5	43190646	43190647	rs35375873	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	5p12		rs35375873-?	NR	4E-13				NR [~ 8900000] (imputed)	N
914	chr5	43190867	43190867	rs11444441	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	5p12		rs11444441-TA	NR	3E-12		0.0171	[0.012-0.022] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
914	chr5	43204125	43204126	rs67913249	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Triglycerides	429,011 European ancestry individuals	NA	5p12		rs67913249-C	0.66	6E-6		0.01	mmol/L increase	NR [NR] (imputed)	N
914	chr5	43204125	43204126	rs67913249	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	5p12		rs67913249-C	0.66	2E-8				NR [NR] (imputed)	N
914	chr5	43204125	43204126	rs67913249	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	5p12		rs67913249-C	0.66	3E-11		0.011	% increase	NR [NR] (imputed)	N
914	chr5	43204125	43204126	rs67913249	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		5p12	NIM1K	rs67913249-C	0.658268	1E-10		0.00934618	[0.0065-0.0122] unit increase	Affymetrix [12370749]	N
914	chr5	43205197	43205198	rs35953019	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Acetone levels	115,079 European ancestry individuals	NA	5p12		rs35953019-A	0.657058	2E-9		0.0262167	[0.018-0.035] unit decrease	NR [11722792] (imputed)	N
915	chr5	43264788	43264789	rs4254917	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	5p12	Intergenic	rs4254917-G	0.5581	3E-10		0.0144	[0.0099-0.0189] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
915	chr5	43335569	43335570	rs56206275	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	5p12	Intergenic	rs56206275-T	0.5098	1E-12	(MTAG)	0.0127	[0.0092-0.0162] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
915	chr5	43335569	43335570	rs56206275	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	5p12	Intergenic	rs56206275-C	0.4902	9E-11		0.0126	[0.0087-0.0165] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
915	chr5	43382857	43382858	rs11951515	23934736	Yu B	2013-08-11	Genet Epidemiol	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels  (X-11787)	1,260 African American individuals	NA	5p12	CCL28	rs11951515-C		4E-7		0.04	[0.03-0.06] unit increase	Affymetrix [~ 2500000] (imputed)	N
916	chr5	43410616	43410617	rs73098691	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	5p12	NR	rs73098691-A	0.0681	3E-6	(EA)	0.0689	[0.04-0.098] unit decrease	Illumina [~ 11800000] (imputed)	N
916	chr5	43411602	43411603	rs78958340	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	5p12	CCL28	rs78958340-T	0.964	1E-6	(AA)	0.078	NR unit increase	Illumina [NR] (imputed)	N
916	chr5	43418081	43418082	rs183575223	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	5p12	Intergenic	rs183575223-T	0.963	3E-6	(AA)	0.074	NR unit increase	Illumina [NR] (imputed)	N
916	chr5	43420141	43420142	rs115681743	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	5p12	Intergenic	rs115681743-G	0.963	3E-6	(AA)	0.074	NR unit increase	Illumina [NR] (imputed)	N
916	chr5	43420260	43420261	rs78044334	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	5p12	Intergenic	rs78044334-T	0.963	3E-6	(AA)	0.074	NR unit increase	Illumina [NR] (imputed)	N
916	chr5	43420746	43420747	rs779862	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5p12	NR	rs779862-A	0.717044	3E-10				Affymetrix, Illumina [23472807] (imputed)	N
916	chr5	43426417	43426418	rs75386498	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	5p12	Intergenic	rs75386498-A	0.963	2E-6	(AA)	0.074	NR unit increase	Illumina [NR] (imputed)	N
916	chr5	43430294	43430295	rs750583	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5p12	NR	rs750583-G	0.503171	1E-15				Affymetrix, Illumina [22063850] (imputed)	N
916	chr5	43430294	43430295	rs750583	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	5p12	NR	rs750583-G	0.501838	2E-16		0.015588	[0.012-0.019] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
916	chr5	43435742	43435743	rs76640434	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	5p12	Intergenic	rs76640434-A	0.956	1E-6	(AA)	0.071	NR unit increase	Illumina [NR] (imputed)	N
916	chr5	43436851	43436851	rs372212227	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	5p12		rs372212227-TA	0.48065	8E-13		0.01629169	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
916	chr5	43436851	43436851	rs372212227	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	5p12		rs372212227-TA	0.480652	9E-14		0.016825814	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
916	chr5	43436851	43436851	rs372212227	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	5p12		rs372212227-TA	0.480646	1E-13		0.016698949	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
916	chr5	43439919	43439920	rs189522918	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	5p12	Intergenic	rs189522918-T	0.964	2E-6	(AA)	0.075	NR unit increase	Illumina [NR] (imputed)	N
916	chr5	43448248	43448249	rs77194569	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	5p12	C5orf28	rs77194569-T	0.964	2E-6	(AA)	0.075	NR unit increase	Illumina [NR] (imputed)	N
916	chr5	43449587	43449588	rs4242099	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	5p12	Intergenic	rs4242099-A	0.4575	4E-13	(MTAG)	0.012	[0.0087-0.0153] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
916	chr5	43449587	43449588	rs4242099	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	5p12	Intergenic	rs4242099-A	0.4626	2E-9	(MTAG)	0.0079	[0.0054-0.0104] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
916	chr5	43454559	43454560	rs116000348	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	5p12	C5orf28	rs116000348-G	0.964	2E-6	(AA)	0.075	NR unit increase	Illumina [NR] (imputed)	N
916	chr5	43456475	43456476	rs78321138	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	5p12	C5orf28	rs78321138-A	0.964	2E-6	(AA)	0.075	NR unit increase	Illumina [NR] (imputed)	N
916	chr5	43465142	43465143	rs180834883	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	5p12	C5orf28	rs180834883-G	0.956	2E-6	(AA)	0.068	NR unit increase	Illumina [NR] (imputed)	N
916	chr5	43470659	43470660	rs115252650	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	5p12	C5orf28	rs115252650-T	0.956	2E-6	(AA)	0.068	NR unit increase	Illumina [NR] (imputed)	N
916	chr5	43483283	43483284	rs76677587	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	5p12	C5orf28	rs76677587-C	0.956	2E-6	(AA)	0.068	NR unit increase	Illumina [NR] (imputed)	N
916	chr5	43484256	43484257	rs79904209	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	5p12		rs79904209-?	NR	3E-17				NR [~ 8900000] (imputed)	N
916	chr5	43485971	43485972	rs79923522	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	5p12	Intergenic	rs79923522-A	0.964	2E-6	(AA)	0.075	NR unit increase	Illumina [NR] (imputed)	N
916	chr5	43488435	43488436	rs76881288	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	5p12	C5orf34	rs76881288-G	0.956	2E-6	(AA)	0.068	NR unit increase	Illumina [NR] (imputed)	N
916	chr5	43491938	43491939	rs146735629	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	5p12	C5orf34	rs146735629-T	0.956	2E-6	(AA)	0.068	NR unit increase	Illumina [NR] (imputed)	N
916	chr5	43494213	43494214	rs7712914	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	5p12	C5orf34	rs7712914-G	0.963	2E-6	(AA)	0.075	NR unit increase	Illumina [NR] (imputed)	N
916	chr5	43511114	43511115	rs370158623	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	5p12	C5orf34	rs370158623-T	0.392212	1E-9		0.014777366	[0.01-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
916	chr5	43511140	43511141	rs372391934	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	5p12	C5orf34	rs372391934-A	0.39324	4E-13		0.017661301	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
916	chr5	43515172	43515173	rs75401687	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	5p12	C5orf34	rs75401687-T	0.964	2E-6	(AA)	0.075	NR unit increase	Illumina [NR] (imputed)	N
916	chr5	43515279	43515280	rs12520489	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	5p12		rs12520489-?	NR	4E-12				NR [~ 8900000] (imputed)	N
917	chr5	43520523	43520524	rs79942555	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	5p12	Intergenic	rs79942555-T	0.964	2E-6	(AA)	0.075	NR unit increase	Illumina [NR] (imputed)	N
917	chr5	43524558	43524559	rs76396004	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	5p12	Intergenic	rs76396004-T	0.956	2E-6	(AA)	0.068	NR unit increase	Illumina [NR] (imputed)	N
917	chr5	43531688	43531689	rs141017100	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	5p12	PAIP1	rs141017100-T	0.963	2E-6	(AA)	0.075	NR unit increase	Illumina [NR] (imputed)	N
917	chr5	43545733	43545734	rs191057893	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	5p12	NR	rs191057893-G	0.0079	8E-6	(EA)	0.2573	[0.14-0.37] unit decrease	Illumina [~ 11800000] (imputed)	N
917	chr5	43548687	43548688	rs115378923	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	5p12	PAIP1	rs115378923-T	0.963	2E-6	(AA)	0.075	NR unit increase	Illumina [NR] (imputed)	N
917	chr5	43551833	43551834	rs116695782	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	5p12	PAIP1	rs116695782-A	0.963	2E-6	(AA)	0.075	NR unit increase	Illumina [NR] (imputed)	N
917	chr5	43554118	43554119	rs79481971	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	5p12	PAIP1	rs79481971-C	0.963	2E-6	(AA)	0.075	NR unit increase	Illumina [NR] (imputed)	N
917	chr5	43557404	43557405	rs13360902	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	5p12		rs13360902-?	NR	6E-15				NR [~ 8900000] (imputed)	N
917	chr5	43558451	43558452	rs77683199	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	5p12	Intergenic	rs77683199-A	0.963	2E-6	(AA)	0.075	NR unit increase	Illumina [NR] (imputed)	N
917	chr5	43563436	43563437	rs114512566	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	5p12	Intergenic	rs114512566-C	0.963	1E-6	(AA)	0.075	NR unit increase	Illumina [NR] (imputed)	N
917	chr5	43567591	43567592	rs141238427	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	5p12	Intergenic	rs141238427-A	0.955	3E-6	(AA)	0.067	NR unit increase	Illumina [NR] (imputed)	N
917	chr5	43568116	43568117	rs115426610	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	5p12	Intergenic	rs115426610-T	0.955	3E-6	(AA)	0.067	NR unit increase	Illumina [NR] (imputed)	N
917	chr5	43569901	43569902	rs78646877	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	5p12	Intergenic	rs78646877-G	0.955	3E-6	(AA)	0.067	NR unit increase	Illumina [NR] (imputed)	N
917	chr5	43573133	43573134	rs116448453	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	5p12	Intergenic	rs116448453-T	0.963	1E-6	(AA)	0.075	NR unit increase	Illumina [NR] (imputed)	N
917	chr5	43587827	43587828	rs115648704	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	5p12	AK096668	rs115648704-G	0.963	1E-6	(AA)	0.075	NR unit increase	Illumina [NR] (imputed)	N
917	chr5	43588840	43588841	rs114955764	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	5p12	AK096668	rs114955764-A	0.963	1E-6	(AA)	0.075	NR unit increase	Illumina [NR] (imputed)	N
917	chr5	43590507	43590508	rs76517075	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	5p12	AK096668	rs76517075-T	0.963	1E-6	(AA)	0.075	NR unit increase	Illumina [NR] (imputed)	N
917	chr5	43594590	43594591	rs79482941	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	5p12	AK096668	rs79482941-T	0.963	1E-6	(AA)	0.075	NR unit increase	Illumina [NR] (imputed)	N
917	chr5	43596344	43596345	rs79548306	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	5p12	AK096668	rs79548306-A	0.963	1E-6	(AA)	0.075	NR unit increase	Illumina [NR] (imputed)	N
917	chr5	43596345	43596346	rs77333560	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	5p12	AK096668	rs77333560-T	0.963	1E-6	(AA)	0.075	NR unit increase	Illumina [NR] (imputed)	N
917	chr5	43598644	43598644	rs11381197	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	5p12	NNT-AS1	rs11381197-CA	0.487875	2E-12		0.015681673	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
917	chr5	43600975	43600976	rs114176814	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	5p12	AK096668	rs114176814-T	0.963	1E-6	(AA)	0.075	NR unit increase	Illumina [NR] (imputed)	N
917	chr5	43643224	43643225	rs115760645	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	5p12	NNT	rs115760645-G	0.963	1E-6	(AA)	0.075	NR unit increase	Illumina [NR] (imputed)	N
918	chr5	43649604	43649605	rs74863720	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	5p12	NNT	rs74863720-A	0.963	1E-6	(AA)	0.075	NR unit increase	Illumina [NR] (imputed)	N
918	chr5	43656073	43656074	rs75710404	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	5p12		rs75710404-?	NR	5E-7		1.31687	[1.21-1.42]	NR [685523]	N
918	chr5	43672962	43672963	rs192225282	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	5p12	NNT	rs192225282-A	0.961	2E-6	(AA)	0.074	NR unit increase	Illumina [NR] (imputed)	N
918	chr5	43677752	43677753	rs75999006	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	5p12	NNT	rs75999006-A	0.963	1E-6	(AA)	0.075	NR unit increase	Illumina [NR] (imputed)	N
918	chr5	43688922	43688923	rs7709284	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	5p12	NNT	rs7709284-G	0.963	1E-6	(AA)	0.075	NR unit increase	Illumina [NR] (imputed)	N
918	chr5	43722554	43722555	rs150379724	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	5p12	Intergenic	rs150379724-T	0.965	7E-7	(AA)	0.08	NR unit increase	Illumina [NR] (imputed)	N
918	chr5	43726799	43726800	rs117565216	29178545	Gao C	2017-11-27	Obesity (Silver Spring)	Genome-Wide Study of Subcutaneous and Visceral Adipose Tissue Reveals Novel Sex-Specific Adiposity Loci in Mexican Americans.	Subcutaneous adipose tissue	580 Mexican American female individuals, 403 Mexican American male individuals.	NA	5p12	NNT	rs117565216-?	NR	3E-7	(males)	4.696106	NR unit increase	Illumina [7708309] (imputed)	N
918	chr5	43732905	43732906	rs76434282	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	5p12	Intergenic	rs76434282-A	0.964	7E-7	(AA)	0.08	NR unit increase	Illumina [NR] (imputed)	N
918	chr5	43741552	43741553	rs186211928	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	5p12	Intergenic	rs186211928-C	0.965	5E-7	(AA)	0.081	NR unit increase	Illumina [NR] (imputed)	N
918	chr5	43743108	43743109	rs137949823	30487263	Pollack S	2018-11-28	Diabetes	Multiethnic Genome-wide Association Study of Diabetic Retinopathy using Liability Threshold Modeling of Duration of Diabetes and Glycemic Control.	Proliferative diabetic retinopathy (vs NPDR and no DR)	398 European ancestry cases, 2,848 European ancestry controls, 1,097 African American cases, 1,514 African American controls	918 East Asian ancestry cases, 1,167 East Asian ancestry controls, 2,038 European ancestry cases, 6,783 European ancestry controls, 232 Hispanic cases, 2,194 Hispanic controls	5p12	NR	rs137949823-?	NR	6E-8	(AA)	2.3255813	[NR]	Affymetrix, Illumina [NR] (imputed)	N
918	chr5	43744144	43744145	rs144585579	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	5p12	Intergenic	rs144585579-G	0.965	5E-7	(AA)	0.081	NR unit increase	Illumina [NR] (imputed)	N
918	chr5	43745421	43745422	rs191814357	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	5p12	Intergenic	rs191814357-A	0.965	5E-7	(AA)	0.081	NR unit increase	Illumina [NR] (imputed)	N
918	chr5	43745761	43745762	rs185720825	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	5p12	Intergenic	rs185720825-T	0.965	5E-7	(AA)	0.081	NR unit increase	Illumina [NR] (imputed)	N
918	chr5	43746543	43746544	rs140263876	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	5p12	Intergenic	rs140263876-A	0.965	5E-7	(AA)	0.081	NR unit increase	Illumina [NR] (imputed)	N
918	chr5	43751765	43751766	rs151142406	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	5p12	Intergenic	rs151142406-T	0.965	5E-7	(AA)	0.081	NR unit increase	Illumina [NR] (imputed)	N
918	chr5	43753717	43753718	rs114693035	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	5p12	Intergenic	rs114693035-A	0.965	6E-7	(AA)	0.081	NR unit increase	Illumina [NR] (imputed)	N
918	chr5	43754101	43754102	rs146358354	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	5p12	Intergenic	rs146358354-A	0.965	6E-7	(AA)	0.081	NR unit increase	Illumina [NR] (imputed)	N
918	chr5	43756458	43756459	rs149945008	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	5p12	Intergenic	rs149945008-T	0.966	8E-7	(AA)	0.08	NR unit increase	Illumina [NR] (imputed)	N
918	chr5	43756929	43756930	rs144969515	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	5p12	Intergenic	rs144969515-A	0.966	9E-7	(AA)	0.08	NR unit increase	Illumina [NR] (imputed)	N
918	chr5	43757778	43757779	rs114493850	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	5p12	Intergenic	rs114493850-T	0.966	9E-7	(AA)	0.08	NR unit increase	Illumina [NR] (imputed)	N
918	chr5	43758961	43758962	rs182876247	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	5p12	Intergenic	rs182876247-A	0.965	1E-6	(AA)	0.08	NR unit increase	Illumina [NR] (imputed)	N
918	chr5	43760716	43760717	rs7706711	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	5p12	Intergenic	rs7706711-T	0.966	9E-7	(AA)	0.08	NR unit increase	Illumina [NR] (imputed)	N
918	chr5	43761711	43761712	rs80059051	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	5p12	Intergenic	rs80059051-A	0.966	9E-7	(AA)	0.08	NR unit increase	Illumina [NR] (imputed)	N
918	chr5	43765674	43765675	rs116599402	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	5p12	Intergenic	rs116599402-T	0.966	1E-6	(AA)	0.08	NR unit increase	Illumina [NR] (imputed)	N
918	chr5	43767434	43767435	rs79580180	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	5p12	Intergenic	rs79580180-T	0.966	1E-6	(AA)	0.08	NR unit increase	Illumina [NR] (imputed)	N
918	chr5	43774111	43774112	rs115955109	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	5p12	Intergenic	rs115955109-A	0.966	1E-6	(AA)	0.08	NR unit increase	Illumina [NR] (imputed)	N
919	chr5	43779182	43779183	rs79600599	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	5p12	Intergenic	rs79600599-A	0.966	1E-6	(AA)	0.079	NR unit increase	Illumina [NR] (imputed)	N
919	chr5	43791148	43791149	rs62369484	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	5p12	NNT	rs62369484-T	0.943631	5E-9		0.02498	[0.017-0.033] unit increase	Affymetrix [NR] (imputed)	N
919	chr5	43792526	43792527	rs192558570	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	5p12	Intergenic	rs192558570-G	0.966	1E-6	(AA)	0.08	NR unit increase	Illumina [NR] (imputed)	N
919	chr5	43799927	43799928	rs114091587	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	5p12	Intergenic	rs114091587-C	0.966	1E-6	(AA)	0.08	NR unit increase	Illumina [NR] (imputed)	N
919	chr5	43800830	43800831	rs75618061	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	5p12	Intergenic	rs75618061-G	0.966	1E-6	(AA)	0.08	NR unit increase	Illumina [NR] (imputed)	N
919	chr5	43802348	43802349	rs78796889	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	5p12	Intergenic	rs78796889-A	0.966	1E-6	(AA)	0.08	NR unit increase	Illumina [NR] (imputed)	N
919	chr5	43814322	43814323	rs147861254	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	5p12	Intergenic	rs147861254-T	0.951	2E-6	(AA)	0.07	NR unit increase	Illumina [NR] (imputed)	N
919	chr5	43815577	43815578	rs62369502	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	5p12	NR	rs62369502-C	NR	7E-11		0.0307	[0.021-0.04] unit decrease	Affymetrix [9000000] (imputed)	N
919	chr5	43818795	43818796	rs138936180	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	5p12	Intergenic	rs138936180-T	0.967	2E-6	(AA)	0.08	NR unit increase	Illumina [NR] (imputed)	N
919	chr5	43824262	43824263	rs7730268	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	5p12		rs7730268-G	NR	7E-10		0.0266	[0.018-0.035] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
919	chr5	43824676	43824677	rs7710854	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Citrate levels	115,068 European ancestry individuals	NA	5p12		rs7710854-A	0.883833	5E-23		0.0623851	[0.05-0.075] unit increase	NR [11722792] (imputed)	N
919	chr5	43824676	43824677	rs7710854	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	5p12		rs7710854-G	0.116227	2E-11		0.02332374	[0.016-0.03] unit increase	Affymetrix [93095623] (imputed)	N
919	chr5	43824676	43824677	rs7710854	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5p12	NR	rs7710854-A	0.880702	1E-11				Affymetrix, Illumina [17210439] (imputed)	N
919	chr5	43824676	43824677	rs7710854	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	5p12	NR	rs7710854-A	0.883292	5E-13		0.021621	[0.016-0.027] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
919	chr5	43824676	43824677	rs7710854	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	5p12		rs7710854-?	NR	1E-8				NR [~ 8900000] (imputed)	N
919	chr5	43824676	43824677	rs7710854	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	5p12	NNT	rs7710854-A	0.8824	4E-11		0.1806	[0.13-0.23] unit increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
919	chr5	43826404	43826405	rs76279502	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	5p12	Intergenic	rs76279502-A	0.967	2E-6	(AA)	0.08	NR unit increase	Illumina [NR] (imputed)	N
919	chr5	43858673	43858674	rs75617866	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	5p12	Intergenic	rs75617866-A	0.965	4E-6	(AA)	0.077	NR unit increase	Illumina [NR] (imputed)	N
919	chr5	43865451	43865452	rs6862256	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	5p12		rs6862256-C	NR	3E-10		0.0118	[0.0081-0.0155] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
919	chr5	43866595	43866596	rs10473333	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	5p12		rs10473333-?	NR	5E-8				NR [~ 8900000] (imputed)	N
919	chr5	43867805	43867806	rs114770284	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	5p12	Intergenic	rs114770284-G	0.965	4E-6	(AA)	0.076	NR unit increase	Illumina [NR] (imputed)	N
919	chr5	43879989	43879990	rs75650673	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	5p12	Intergenic	rs75650673-G	0.965	4E-6	(AA)	0.076	NR unit increase	Illumina [NR] (imputed)	N
919	chr5	43888282	43888283	rs115007675	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	5p12	Intergenic	rs115007675-A	0.965	4E-6	(AA)	0.076	NR unit increase	Illumina [NR] (imputed)	N
919	chr5	43888735	43888736	rs78883564	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	5p12	Intergenic	rs78883564-C	0.965	4E-6	(AA)	0.076	NR unit increase	Illumina [NR] (imputed)	N
919	chr5	43891435	43891436	rs35029702	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	5p12	NR	rs35029702-A	0.0911	1E-7	(EA)	0.0609	[0.038-0.084] unit decrease	Illumina [~ 11800000] (imputed)	N
920	chr5	43909342	43909343	rs113449872	29381699	Ravenhall M	2018-01-30	PLoS Genet	Novel genetic polymorphisms associated with severe malaria and under selective pressure in North-eastern Tanzania.	Severe malaria (adjusted for sickle cell variant rs334)	449 Tanzanian ancestry cases, 465 Tanzanian ancestry controls	NA	5p12	Intergenic	rs113449872-?	NR	3E-7	(Heterozygous)		[NR]	Illumina [15200000] (imputed)	N
920	chr5	43909342	43909343	rs113449872	29381699	Ravenhall M	2018-01-30	PLoS Genet	Novel genetic polymorphisms associated with severe malaria and under selective pressure in North-eastern Tanzania.	Severe malaria	449 Tanzanian ancestry cases, 465 Tanzanian ancestry controls	NA	5p12	Intergenic	rs113449872-?	NR	2E-7	(Heterozygous)	2.8248587	[NR]	Illumina [15200000] (imputed)	N
920	chr5	43970053	43970054	rs62368105	34488071	Crist RC	2021-08-28	Drug Alcohol Depend	Analysis of genetic and clinical factors associated with buprenorphine response.	Response to buprenorphine in opioid use disorder	1,609 European ancestry individuals	NA	5p12		rs62368105-G	NR	7E-6		1.9437	[1.65-2.23]	Affymetrix [NR] (imputed)	N
920	chr5	43976161	43976162	rs4866846	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	5p12	NNT	rs4866846-A	0.1499	7E-10		0.0218	[0.015-0.029] unit increase	Affymetrix [19819130] (imputed)	N
920	chr5	43976161	43976162	rs4866846	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	5p12	NNT	rs4866846-A	0.1499	3E-12		0.023	[0.017-0.029] unit increase	Affymetrix [19819130] (imputed)	N
920	chr5	43976161	43976162	rs4866846	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	5p12	NNT	rs4866846-A	0.1499	2E-17		0.0277	[0.021-0.034] unit increase	Affymetrix [19819130] (imputed)	N
921	chr5	44054119	44054120	rs72750185	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	5p12		rs72750185-?	NR	9E-11				NR [~ 8900000] (imputed)	N
921	chr5	44068845	44068846	rs10462065	28232668	Yu Y	2017-02-24	Nat Commun	Genome-wide analyses of non-syndromic cleft lip with palate identify 14 novel loci and genetic heterogeneity.	Nonsyndromic cleft lip with cleft palate	2,033 Han Chinese ancestry cases, 4,051 Han Chinese ancestry controls	1,346 Han Chinese ancestry cases, 4,542 Han Chinese ancestry controls	5p12	FGF10	rs10462065-A	0.2	1E-8		1.22		Illumina [803202]	N
921	chr5	44129422	44129423	rs4410642	31212010	Cabana-Dominguez J	2019-06-15	Prog Neuropsychopharmacol Biol Psychiatry	Genome-wide association meta-analysis of cocaine dependence: Shared genetics with comorbid conditions.	Cocaine dependence	2,085 European ancestry cases, 4,293 European ancestry controls	NA	5p12	intergenic	rs4410642-C	NR	9E-6		0.288	[0.16-0.42] unit increase	Illumina [9290362] (imputed)	N
921	chr5	44145930	44145931	rs11749176	32424353	Zhang H	2020-05-18	Nat Genet	Genome-wide association study identifies 32 novel breast cancer susceptibility loci from overall and subtype-specific analyses.	Breast cancer	133,384 European ancestry cases, 113,789 European ancestry controls	NA	5p12	NR	rs11749176-?	NR	9E-10				Illumina [~ 10800000] (imputed)	N
921	chr5	44145930	44145931	rs11749176	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	5p12	FGF10	rs11749176-A	NR	2E-7	(between families)	5.218	unit increase	Affymetrix [up to 15107142] (imputed)	N
922	chr5	44181509	44181510	rs143137951	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	91,908 East Asian ancestry individuals	NA	5p12		rs143137951-G	0.010893	2E-8		0.126792	[0.083-0.171] unit decrease	Illumina [13469940] (imputed)	N
922	chr5	44181509	44181510	rs143137951	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	349,856 European ancestry individuals, 91,908 East Asian ancestry individuals	NA	5p12		rs143137951-G	NR	2E-8		0.1268	[0.083-0.171] unit decrease	Affymetrix, Illumina [20529536] (imputed)	N
922	chr5	44186667	44186668	rs4296809	20171287	Stein JL	2010-02-17	Neuroimage	Voxelwise genome-wide association study (vGWAS).	Brain structure	740 European ancestry individuals	NA	5p12	intergenic	rs4296809-?	0.15	9E-7				Illumina [448293]	N
922	chr5	44190756	44190757	rs73754158	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	5p12	FGF10	rs73754158-T	0.1497	3E-8		0.0028	[0.0018-0.0038] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
922	chr5	44201485	44201486	rs117331805	33766948	Zhu Z	2021-03-25	Eur Respir J	A large-scale genome-wide association analysis of lung function in the Chinese population identifies novel loci and highlights shared genetic etiology with obesity.	Lung function (FEV1)	100,285 Chinese ancestry individuals	NA	5p12		rs117331805-A	0.94	4E-15		0.076	[0.056-0.096] L decrease	Affymetrix [NR] (imputed)	N
922	chr5	44296985	44296986	rs1448044	30175238	Jackson VE	2018-01-12	Wellcome Open Res	Meta-analysis of exome array data identifies six novel genetic loci for lung function.	Lung function (FVC)	60,749 European ancestry individuals, 7,721 African ancestry individuals	111,556 European ancestry individuals	5p12	FGF10	rs1448044-A	0.35637	2E-11		6.691	unit increase	Illumina [179215]	N
922	chr5	44301166	44301167	rs11742761	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	5p12	Intergenic	rs11742761-A	NR	3E-7	(between families)	5.107	unit decrease	Affymetrix [up to 15107142] (imputed)	N
922	chr5	44302176	44302177	rs13186320	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	5p12	NR	rs13186320-T	0.515	5E-15	(EA)	0.0483	[0.036-0.06] unit increase	Illumina [~ 11800000] (imputed)	N
923	chr5	44325321	44325322	rs4498258	28373541	Yang J	2017-04-03	Proc Natl Acad Sci U S A	Genetic signatures of high-altitude adaptation in Tibetans.	High altitude adaptation	3,008 Tibetan (founder/genetic isolate) individuals and 7,287 East Asian individuals	NA	5p12	FGF10	rs4498258-T	0.287	2E-8				Illumina [7300000] (imputed)	N
923	chr5	44349140	44349141	rs1448039	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	5p12		rs1448039-?	NR	2E-19				NR [~ 8900000] (imputed)	N
923	chr5	44365077	44365078	rs78732306	33766948	Zhu Z	2021-03-25	Eur Respir J	A large-scale genome-wide association analysis of lung function in the Chinese population identifies novel loci and highlights shared genetic etiology with obesity.	Lung function (FVC)	100,285 Chinese ancestry individuals	NA	5p12		rs78732306-T	0.91	5E-17		0.068	[0.058-0.078] L decrease	Affymetrix [NR] (imputed)	N
923	chr5	44365544	44365545	rs2121875	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	5p12	NR	rs2121875-C	0.33	1E-8		1.05	[1.03-1.07]	Illumina [20370935] (imputed)	N
923	chr5	44365544	44365545	rs2121875	21743467	Kote-Jarai Z	2011-07-10	Nat Genet	Seven prostate cancer susceptibility loci identified by a multi-stage genome-wide association study.	Prostate cancer	6,621 European ancestry cases, 6,939 European ancestry controls	22,957 European ancestry cases, 23,234 European ancestry controls, 420 East Asian ancestry cases, 433 East Asian ancestry controls, 112 African American cases, 298 African American controls, 7,140 cases, 5,455 controls	5p12	FGF10	rs2121875-G	0.34	4E-8		1.05	[1.02-1.08]	NR [2600000] (imputed)	N
923	chr5	44366551	44366552	rs16874036	35132056	Mitchell BL	2022-02-07	Nat Commun	Genome-wide association meta-analysis identifies 29 new acne susceptibility loci.	acne vulgaris	20,165 European ancestry cases, 595,231 European ancestry controls	NA	5p12	NR	rs16874036-G	0.6926	1E-15		1.11	[1.08-1.14]	Affymetrix, Illumina [7072771] (imputed)	N
923	chr5	44367220	44367221	rs6859730	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	5p12	FGF10	rs6859730-A	0.3275	9E-17		0.0206	[0.016-0.026] unit increase	Affymetrix [19819130] (imputed)	N
923	chr5	44367220	44367221	rs6859730	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	5p12	FGF10	rs6859730-A	0.3275	3E-13		0.018	[0.013-0.023] unit increase	Affymetrix [19819130] (imputed)	N
923	chr5	44368505	44368506	rs1482675	33766948	Zhu Z	2021-03-25	Eur Respir J	A large-scale genome-wide association analysis of lung function in the Chinese population identifies novel loci and highlights shared genetic etiology with obesity.	Lung function (FEV1)	100,285 Chinese ancestry individuals	NA	5p12		rs1482675-T	0.28	6E-21		0.046	L increase	Affymetrix [NR] (imputed)	N
923	chr5	44368505	44368506	rs1482675	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	5p12	NR	rs1482675-T	NR	4E-7		1.036	[1.02-1.05]	Affymetrix, Illumina [29235255] (imputed)	N
923	chr5	44412064	44412065	rs11741260	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	5p12		rs11741260-?	NR	2E-6		1.07142	[1.04-1.1]	NR [685523]	N
923	chr5	44412064	44412065	rs11741260	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Keratinocyte cancer (MTAG)	at least 18,538 European ancestry cases, at least 340,302 European ancestry controls	NA	5p12	FGF10	rs11741260-A	NR	2E-7		1.0638298	[1.04-1.09]	Affymetrix [7600000] (imputed)	N
923	chr5	44412064	44412065	rs11741260	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Basal cell carcinoma	31,787 European ancestry cases, 619,351 European ancestry controls	NA	5p12	FGF10	rs11741260-A	0.141084	9E-10		1.07	[1.05-1.09]	Affymetrix, Illumina [up to 9061544] (imputed)	N
924	chr5	44441529	44441530	rs72748034	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	5p12	NR	rs72748034-G	0.0371483	3E-9		0.0482789	[0.032-0.064] unit decrease	NR [19129689] (imputed)	N
924	chr5	44441702	44441703	rs1351637	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	5p12		rs1351637-G	0.21	3E-12		6.97	z score increase	Affymetrix [9061022] (imputed)	N
924	chr5	44441702	44441703	rs1351637	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		5p12	NR	rs1351637-G	NR	3E-8		0.0432093	NR unit decrease	NR [NR] (imputed)	N
924	chr5	44474069	44474070	rs117675260	33766948	Zhu Z	2021-03-25	Eur Respir J	A large-scale genome-wide association analysis of lung function in the Chinese population identifies novel loci and highlights shared genetic etiology with obesity.	Lung function (FEV1)	100,285 Chinese ancestry individuals	NA	5p12		rs117675260-G	0.96	2E-8		0.069	[0.045-0.093] L decrease	Affymetrix [NR] (imputed)	N
924	chr5	44476871	44476872	rs12520604	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Breast cancer	17,881 European ancestry cases, 410,350 European ancestry controls	NA	5p12		rs12520604-C	NR	5E-8		1.1734335	NR	Affymetrix [7846216] (imputed)	N
924	chr5	44507247	44507248	rs72748085	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	5p12		rs72748085-?	NR	1E-10				NR [~ 8900000] (imputed)	N
924	chr5	44515934	44515935	rs13153459	26227905	Hu Y	2015-07-31	Mol Neurobiol	A Pooling Genome-Wide Association Study Combining a Pathway Analysis for Typical Sporadic Parkinson's Disease in the Han Population of Chinese Mainland.	Parkinson's disease	250 Han Chinese ancestry cases, 250 Han Chinese ancestry controls	NA	5p12	FGF10, MRPS30	rs13153459-?	NR	1E-6		2.45	[1.79-3.34]	Illumina [862198]	N
924	chr5	44518580	44518580	rs143838665	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 17, height of vermillion upper lip)	2,187 European ancestry individuals	NA	5p12	NR	rs143838665-CT	0.2123	4E-6		0.1683	[0.097-0.24] unit decrease	Illumina [10677593] (imputed)	N
924	chr5	44534363	44534364	rs62368490	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	5p12	MRPS30	rs62368490-T	0.0313	3E-6		1.1	[1.06-1.14]	Affymetrix, Illumina [~ 27000000] (imputed)	N
924	chr5	44539452	44539453	rs1482698	31235808	Shungin D	2019-06-24	Nat Commun	Genome-wide analysis of dental caries and periodontitis combining clinical and self-reported data.	Number of decayed, missing and filled tooth surfaces or use of dentures	14,976 European ancestry individuals with decayed, missing or filled tooth surface measurement, 11,816 Hispanic/Latino individuals with decayed, missing or filled tooth surface measurement, 77,714 European ancestry dentures cases, 383,317 European ancestry controls	NA	5p12	FGF10	rs1482698-C	0.38	1E-13		0.02	[0.015-0.025] unit increase	Affymetrix, Illumina [~ 8900000] (imputed)	N
924	chr5	44539452	44539453	rs1482698	31235808	Shungin D	2019-06-24	Nat Commun	Genome-wide analysis of dental caries and periodontitis combining clinical and self-reported data.	Dentures	77,714 European ancestry cases, 383,317 European ancestry controls	NA	5p12	FGF10	rs1482698-C	0.38	3E-12		0.04	[0.029-0.051] unit increase	Affymetrix [at least 8900000] (imputed)	N
925	chr5	44580192	44580193	rs4866909	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 62)	3,566 European ancestry individuals	4,680 European ancestry individuals	5p12		rs4866909-C	0.443470888	2E-10				Illumina [7417619] (imputed)	N
925	chr5	44594080	44594081	rs138096085	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Breast cancer	17,881 European ancestry cases, 410,350 European ancestry controls	NA	5p12		rs138096085-C	NR	4E-9		1.2026458	NR	Affymetrix [7846216] (imputed)	N
925	chr5	44644005	44644006	rs4479849	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	5p12	NR	rs4479849-G	0.5861	3E-11		0.0258	[0.018-0.033] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
925	chr5	44662514	44662515	rs4415084	31757997	Low SK	2019-11-22	Sci Rep	Identification of two novel breast cancer loci through large-scale genome-wide association study in the Japanese population.	Breast cancer	6,669 Japanese ancestry cases, 21,930 Japanese ancestry controls	981 Japanese ancestry cases, 1,394 Japanese ancestry controls	5p12	LOC102723839, RN7SL383P	rs4415084-?	NR	3E-9		1.12907	[1.08486-1.17509]	Illumina [4946503] (imputed)	N
925	chr5	44662514	44662515	rs4415084	21263130	Fletcher O	2011-01-24	J Natl Cancer Inst	Novel breast cancer susceptibility locus at 9q31.2: results of a genome-wide association study.	Breast cancer	2,839 European ancestry cases, 3,507 European ancestry controls	9,041 European ancestry cases, 8,980 European ancestry controls	5p12	intergenic	rs4415084-T	0.42	8E-11		1.17	[1.11-1.22]	Illumina [~ 296114]	N
925	chr5	44663136	44663137	rs7701466	31757997	Low SK	2019-11-22	Sci Rep	Identification of two novel breast cancer loci through large-scale genome-wide association study in the Japanese population.	Breast cancer	6,669 Japanese ancestry cases, 21,930 Japanese ancestry controls	981 Japanese ancestry cases, 1,394 Japanese ancestry controls	5p12	FGF10, MRPS30	rs7701466-T	0.492	2E-10		1.138	[1.094-1.184]	Illumina [4946503] (imputed)	N
925	chr5	44672782	44672783	rs10941678	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Breast cancer	5,552 Japanese ancestry cases, 89,731 Japanese ancestry controls	NA	5p12		rs10941678-A	0.57826253	7E-12		1.1487857	[1.104188921-1.195183824]	Illumina [8919992] (imputed)	N
925	chr5	44672941	44672942	rs55788307	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Breast cancer	6,325 East Asian ancestry cases, 73,225 East Asian ancestry controls	NA	5p12		rs55788307-C	0.579554342	4E-14		0.14701666	[0.11-0.19] unit increase	Illumina [13401000] (imputed)	N
925	chr5	44680686	44680687	rs13155752	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	5p12	NR	rs13155752-C	0.3965	1E-11		0.0316	[0.022-0.041] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
925	chr5	44680686	44680687	rs13155752	30557370	Baas J	2018-12-17	PLoS One	Genome wide association study to identify predictors for severe skin toxicity in colorectal cancer patients treated with cetuximab.	Severe skin toxicity response to cetuximab in colorectal cancer	36 cases, 246 controls with no or mild skin toxicity	NA	5p12	Intergenic	rs13155752-?	NR	2E-6		3.82	[2.11-6.92]	Illumina [5830976] (imputed)	N
925	chr5	44682588	44682589	rs6884702	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	5p12	MRPS30	rs6884702-G	0.3932	2E-10		1.04	[1.03-1.06]	Affymetrix, Illumina [~ 27000000] (imputed)	N
925	chr5	44685697	44685698	rs12522626	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (unclassified genus belonging to family Erysipelotrichaceae)	1,068 Japanese ancestry individuals	NA	5p12	intergenic	rs12522626-G	0.41	1E-6		0.15	[0.089-0.211] unit increase	Illumina [6380737] (imputed)	N
926	chr5	44701417	44701418	rs714130	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Breast cancer	10,682 White British ancestry cases, 138,504 White British ancestry controls	NA	5p12		rs714130-?	NR	7E-9		1.0876	[1.06-1.12]	NR [682398]	N
926	chr5	44706497	44706498	rs10941679	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Breast cancer	17,389 European ancestry cases, 240,341 European ancestry controls, 6,325 East Asian ancestry cases, 73,225 East Asian ancestry controls	NA	5p12		rs10941679-G	NR	1E-30		0.1282	[0.11-0.15] unit increase	Affymetrix, Illumina [25794640] (imputed)	N
926	chr5	44706497	44706498	rs10941679	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	5p12		rs10941679-G	NR	5E-21		1.1325028	[1.1-1.16]	Affymetrix [7846216] (imputed)	N
926	chr5	44706497	44706498	rs10941679	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Breast cancer	17,881 European ancestry cases, 410,350 European ancestry controls	NA	5p12		rs10941679-G	NR	8E-25		1.1381744	NR	Affymetrix [7846216] (imputed)	N
926	chr5	44706497	44706498	rs10941679	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	5p12		rs10941679-A	NR	1E-80		0.89	[0.88-0.9]	Affymetrix, Illumina [NR] (imputed)	N
926	chr5	44706497	44706498	rs10941679	31757997	Low SK	2019-11-22	Sci Rep	Identification of two novel breast cancer loci through large-scale genome-wide association study in the Japanese population.	Breast cancer	6,669 Japanese ancestry cases, 21,930 Japanese ancestry controls	981 Japanese ancestry cases, 1,394 Japanese ancestry controls	5p12	LOC102723839, RN7SL383P	rs10941679-?	NR	3E-9		1.132975	[1.09-1.18]	Illumina [4946503] (imputed)	N
926	chr5	44706497	44706498	rs10941679	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	5p12	FGF10, MRPS30	rs10941679-G	0.25	6E-73		1.15	[1.13-1.18] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
926	chr5	44706497	44706498	rs10941679	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	46,785 European ancestry cases, 42,892 European ancestry controls	NA	5p12	NR	rs10941679-G	0.25	3E-26		1.12	[1.1-1.15]	Affymetrix, Illumina [~ 14000000] (imputed)	N
926	chr5	44706497	44706498	rs10941679	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	15,748 European ancestry cases, 18,084 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls	5p12	NR	rs10941679-G	0.25	5E-32		1.12	[1.1-1.15]	Affymetrix, Illumina [~ 11600000] (imputed)	N
926	chr5	44706497	44706498	rs10941679	23535729	Michailidou K	2013-04-01	Nat Genet	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	5p12	intergenic	rs10941679-G	0.25	2E-37		1.13	[1.10-1.15]	Affymetrix, Illumina [~ 2600000] (imputed)	N
926	chr5	44712741	44712742	rs112534819	30468137	Fabbri C	2018-11-23	Br J Psychiatry	Genome-wide association study of treatment-resistance in depression and meta-analysis of three independent samples.	Depressive symptom improvement	1,378 European ancestry treatment resistant cases, 934 European ancestry responders to first treatment	NA	5p12	RN7SL383P	rs112534819-T	0.02	2E-6		0.37	[0.21-0.53] unit increase	Affymetrix, Illumina [7000000] (imputed)	N
926	chr5	44782482	44782483	rs397997636	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	5p12		rs397997636-A	NR	8E-10		0.0101	[0.007-0.0132] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
926	chr5	44809368	44809369	rs35601455	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5p12	NR	rs35601455-T	0.01045	2E-9	(OAT)	0.07152	NR unit increase	Illumina [1671387] (imputed)	N
926	chr5	44812565	44812566	rs11746506	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	5p12	MRPS30	rs11746506-T	0.4088	5E-11		0.0017	[0.0011-0.0023] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
926	chr5	44822457	44822458	rs930395	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	5p12	NR	rs930395-A	0.2206	2E-58	(EA)	0.1187	[0.1-0.13] unit increase	Illumina [~ 11800000] (imputed)	N
927	chr5	44857466	44857467	rs4629607	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	5p12	NR	rs4629607-G	NR	1E-6		1.0526316	[NR]	Illumina [7158791] (imputed)	N
927	chr5	44875004	44875005	rs7716600	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Breast cancer	10,682 White British ancestry cases, 138,504 White British ancestry controls	NA	5p12		rs7716600-?	NR	7E-8		1.09502	[1.06-1.13]	NR [682398]	N
927	chr5	44875004	44875005	rs7716600	20872241	Li J	2010-09-26	Breast Cancer Res Treat	A combined analysis of genome-wide association studies in breast cancer.	Breast cancer	2,702 European ancestry female cases, 5,726 European ancestry controls	Up to 7,386 cases, 7,576 controls	5p12	MRPS30	rs7716600-A	0.23	7E-7		1.24	[1.14-1.34]	Illumina [285984]	N
927	chr5	44917521	44917522	rs182431363	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Cancer code, self-reported: breast cancer (UKB data field 20001_1002)	10,152 European ancestry cases, 446,124 European ancestry controls	NA	5p12		rs182431363-C	0.003063	4E-10		0.9	[0.62-1.18] unit increase	NR [11842647] (imputed)	N
927	chr5	44926517	44926518	rs10043344	32808324	Hu J	2020-08-17	Genet Epidemiol	Supervariants identification for breast cancer.	Breast cancer	5,653 cases, 28,241 controls	NA	5p12	NR	rs10043344-?		5E-10		1.11	[NR]	NR [41502298] (imputed)	N
927	chr5	44933984	44933984	rs138060088	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	5p12	NR	rs138060088-TTGA	0.5804	9E-43	(EA)	0.0878	[0.075-0.1] unit decrease	Illumina [~ 11800000] (imputed)	N
928	chr5	44969063	44969064	rs77989818	29503163	Yu H	2018-03-01	Lancet Psychiatry	Five novel loci associated with antipsychotic treatment response in patients with schizophrenia: a genome-wide association study.	Response to perphenazine in schizophrenia	193 Han Chinese ancestry cases	NA	5p12	MRPS30	rs77989818-G	NR	7E-6		26.962	[15.57-38.36] unit decrease	Illumina [6097251] (imputed)	N
928	chr5	44975988	44975989	rs6880469	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs anorexia nervosa (ordinary least squares (OLS))	40,675 schizophrenia cases, 16,992 anorexia nervosa cases	NA	5p12		rs6880469-?	NR	2E-9		0.0198	NR unit increase	NR [4425810] (imputed)	N
928	chr5	44992979	44992980	rs72759918	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Breast cancer	10,682 White British ancestry cases, 138,504 White British ancestry controls	NA	5p12		rs72759918-?	NR	6E-6		0.911678	[0.87-0.95]	NR [682398]	N
928	chr5	44998865	44998866	rs187763903	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Spatial memory	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	5p12	HCN1	rs187763903-C	NR	8E-8		0.7245752	[0.47-0.98] unit decrease	Illumina [> 6200000] (imputed)	N
928	chr5	45000484	45000485	rs184956398	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	8,188 South Asian ancestry individuals	NA	5p12	NR	rs184956398-A	4.37872E-4	2E-9		3.3194	[2.24-4.4] SD units decrease	Affymetrix, Illumina [28492174] (imputed)	N
928	chr5	45015044	45015044	rs111869282	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5p12	MRPS30	rs111869282-C	0.791595	7E-9	(322 ms)	0.0384843	[0.025-0.052] unit increase	Affymetrix [10000000] (imputed)	N
928	chr5	45015044	45015044	rs111869282	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5p12	MRPS30	rs111869282-C	0.791595	5E-8	(320 ms)	0.0363181	[0.023-0.05] unit increase	Affymetrix [10000000] (imputed)	N
928	chr5	45015044	45015044	rs111869282	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5p12	MRPS30	rs111869282-C	0.791595	5E-8	(296 ms)	0.0362715	[0.023-0.05] unit increase	Affymetrix [10000000] (imputed)	N
928	chr5	45015044	45015044	rs111869282	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5p12	MRPS30	rs111869282-C	0.791595	5E-8	(292 ms)	0.0360439	[0.023-0.05] unit increase	Affymetrix [10000000] (imputed)	N
928	chr5	45015044	45015044	rs111869282	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5p12	MRPS30	rs111869282-C	0.791595	4E-8	(334 ms)	0.0365422	[0.023-0.05] unit increase	Affymetrix [10000000] (imputed)	N
928	chr5	45015044	45015044	rs111869282	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5p12	MRPS30	rs111869282-C	0.791595	3E-8	(304 ms)	0.0362283	[0.023-0.05] unit increase	Affymetrix [10000000] (imputed)	N
928	chr5	45015044	45015044	rs111869282	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5p12	MRPS30	rs111869282-C	0.791595	3E-8	(288 ms)	0.0367307	[0.023-0.05] unit increase	Affymetrix [10000000] (imputed)	N
928	chr5	45015044	45015044	rs111869282	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5p12	MRPS30	rs111869282-C	0.791595	2E-8	(324 ms)	0.0374842	[0.024-0.051] unit increase	Affymetrix [10000000] (imputed)	N
928	chr5	45015044	45015044	rs111869282	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5p12	MRPS30	rs111869282-C	0.791595	2E-8	(316 ms)	0.037477	[0.024-0.051] unit increase	Affymetrix [10000000] (imputed)	N
928	chr5	45015044	45015044	rs111869282	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5p12	MRPS30	rs111869282-C	0.791595	2E-8	(312 ms)	0.037384	[0.024-0.051] unit increase	Affymetrix [10000000] (imputed)	N
928	chr5	45015044	45015044	rs111869282	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5p12	MRPS30	rs111869282-C	0.791595	2E-8	(310 ms)	0.0365255	[0.023-0.05] unit increase	Affymetrix [10000000] (imputed)	N
928	chr5	45015044	45015044	rs111869282	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5p12	MRPS30	rs111869282-C	0.791595	2E-8	(298 ms)	0.0376908	[0.024-0.051] unit increase	Affymetrix [10000000] (imputed)	N
928	chr5	45015044	45015044	rs111869282	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5p12	MRPS30	rs111869282-C	0.791595	2E-8	(290 ms)	0.0374742	[0.024-0.051] unit increase	Affymetrix [10000000] (imputed)	N
928	chr5	45015044	45015044	rs111869282	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5p12	MRPS30	rs111869282-C	0.791595	1E-8	(314 ms)	0.0378604	[0.024-0.051] unit increase	Affymetrix [10000000] (imputed)	N
928	chr5	45015044	45015044	rs111869282	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5p12	MRPS30	rs111869282-C	0.791595	1E-8	(302 ms)	0.0373727	[0.024-0.051] unit increase	Affymetrix [10000000] (imputed)	N
928	chr5	45015044	45015044	rs111869282	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5p12	MRPS30	rs111869282-C	0.791595	1E-8	(300 ms)	0.0377516	[0.024-0.051] unit increase	Affymetrix [10000000] (imputed)	N
928	chr5	45068295	45068296	rs62369897	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5p12		rs62369897-?	NR	1E-8				NR [~ 8900000] (imputed)	N
928	chr5	45074632	45074633	rs13183434	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	5p12	NR	rs13183434-A	0.1235	4E-17	(EA)	0.0777	[0.06-0.096] unit increase	Illumina [~ 11800000] (imputed)	N
929	chr5	45092932	45092933	rs62369904	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	5p12		rs62369904-T	NR	4E-8		0.0114	[0.0073-0.0155] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
929	chr5	45094502	45094503	rs6885307	27798627	Barban N	2016-10-31	Nat Genet	Genome-wide analysis identifies 12 loci influencing human reproductive behavior.	Age at first birth	189,656 European ancestry women, 48,408 European ancestry men		5p12	MRPS30, HCN1	rs6885307-A	0.799	2E-10		0.107	NR unit decrease	Illumina [2400000] (imputed)	N
929	chr5	45094502	45094503	rs6885307	27798627	Barban N	2016-10-31	Nat Genet	Genome-wide analysis identifies 12 loci influencing human reproductive behavior.	Age at first birth	189,656 European ancestry women		5p12	MRPS30, HCN1	rs6885307-A	0.799	4E-8		0.104	NR unit decrease	Illumina [2400000] (imputed)	N
929	chr5	45112352	45112353	rs62369913	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking cessation (MTAG)	up to 820,192 European ancestry individuals	NA	5p12	NR	rs62369913-T	0.173	5E-10		0.0127382	[0.0087-0.0167] unit decrease	NR [9732723] (imputed)	N
929	chr5	45119646	45119647	rs12523398	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	5p12	HCN1	rs12523398-T	0.827487	1E-15		0.0219237	[0.017-0.027] unit decrease	NR [16516521] (imputed)	N
929	chr5	45188023	45188024	rs4493682	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	5p12		rs4493682-C	0.2034	4E-7		35.550488	z score increase	NR [6814003]	N
929	chr5	45188023	45188024	rs4493682	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	5p12	HCN1	rs4493682-?	NR	3E-10		0.015637161	[0.011-0.021] unit increase	NR [7306098]	N
929	chr5	45188023	45188024	rs4493682	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	5p12	NR	rs4493682-C	0.1717	2E-10		0.018939953	NR unit increase	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
929	chr5	45197778	45197779	rs10941694	20686651	Gudbjartsson DF	2010-07-29	PLoS Genet	Association of variants at UMOD with chronic kidney disease and kidney stones-role of age and comorbid diseases.	Chronic kidney disease and serum creatinine levels	1,689 European ancestry cases, 37,076 European ancestry controls	1,972 European ancestry cases, 6,125 European ancestry controls	5p12	NR	rs10941694-A	0.06	9E-6	(CKD)	1.35	[1.19-1.56]	Illumina [~ 2500000] (imputed)	N
929	chr5	45216248	45216249	rs62367473	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs ADHD (ordinary least squares (OLS))	40,675 schizophrenia cases, 19,099 ADHD cases	NA	5p12		rs62367473-?	NR	2E-8		0.0193	NR unit increase	NR [4428082] (imputed)	N
930	chr5	45227499	45227500	rs6881773	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lung cancer	3,791 European ancestry cases, 489,012 European ancestry controls, 4,444 East Asian ancestry cases, 174,282 East Asian ancestry controls	NA	5p12		rs6881773-C	NR	1E-8		0.1235	[0.081-0.166] unit decrease	Affymetrix, Illumina [25845450] (imputed)	N
930	chr5	45238706	45238707	rs13174257	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	5p12		rs13174257-C	0.874	4E-14		0.014	[0.01-0.018] unit decrease	NR [NR] (imputed)	N
930	chr5	45250474	45250475	rs12517546	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	5p12		rs12517546-C	0.818	8E-13		0.011	[0.0071-0.0149] unit increase	NR [NR] (imputed)	N
930	chr5	45259362	45259363	rs12522910	27089180	Day FR	2016-04-18	Nat Genet	Physical and neurobehavioral determinants of reproductive onset and success.	Age at first sexual intercourse	59,357 British ancestry males, 66,310 British ancestry females	NA	5p12	HCN1	rs12522910-C	0.173709	3E-12		0.0354378	[0.026-0.045] unit increase	Affymetrix [641018] (imputed)	N
930	chr5	45265767	45265768	rs13180087	25866641	Xu W	2015-03-19	Biomark Res	A genome wide association study on Newfoundland colorectal cancer patients' survival outcomes.	Survival in microsatellite instability low/stable colorectal cancer	431 European ancestry cases	NA	5p12	HCN1	rs13180087-?		9E-6	(overall survival)	2.06	[1.50-2.83]	Illumina [729737]	N
930	chr5	45265767	45265768	rs13180087	25866641	Xu W	2015-03-19	Biomark Res	A genome wide association study on Newfoundland colorectal cancer patients' survival outcomes.	Survival in colon cancer	334 European ancestry cases	NA	5p12	HCN1	rs13180087-?		3E-6	(overall survival)	2.4	[1.66-3.46]	Illumina [729737]	N
930	chr5	45279857	45279858	rs62367520	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	5p12	NR	rs62367520-C	0.186	1E-10		0.00891693	[0.0062-0.0116] unit decrease	NR [9732723] (imputed)	N
930	chr5	45279857	45279858	rs62367520	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	5p12	NR	rs62367520-C	0.178	1E-9		0.0116805	[0.0079-0.0154] unit increase	NR [9732723] (imputed)	N
930	chr5	45285717	45285718	rs981782	17529967	Easton DF	2007-05-27	Nature	Genome-wide association study identifies novel breast cancer susceptibility loci.	Breast cancer	390 European ancestry cases, 364 European ancestry controls	4,364 East Asian ancestry cases, 24,174 European ancestry controls, 3,564 East Asian ancestry controls, 24,391 European ancestry controls	5p12	intergenic	rs981782-C	0.53	9E-6		1.04	[1.01-1.08]	Perlegen [205586]	N
930	chr5	45285751	45285752	rs16902086	29483656	Pardinas AF	2018-02-26	Nat Genet	Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.	Schizophrenia	40,675 European ancestry cases, 64,643 European ancestry controls	1,651 European ancestry cases, 4,111 cases, 142,717 European ancestry controls, 11,507 controls	5p12	HCN1	rs16902086-?	NR	6E-11		1.0683761	[1.05-1.09]	Illumina [8000000] (imputed)	N
930	chr5	45286287	45286288	rs72759957	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Breast cancer	10,682 White British ancestry cases, 138,504 White British ancestry controls	NA	5p12		rs72759957-?	NR	9E-8		0.895227	[0.85-0.94]	NR [682398]	N
930	chr5	45301034	45301035	rs9292918	31268507	Periyasamy S	2019-07-03	JAMA Psychiatry	Association of Schizophrenia Risk With Disordered Niacin Metabolism in an Indian Genome-wide Association Study.	Schizophrenia	816 Indian ancestry cases, 900 Indian ancestry controls, 505 Indian ancestry cases and 871 Indian ancestry controls from 405 families, up to 36,989 European and unknown ancestry cases, up to 113,075 European and unknown ancestry controls	NA	5p12	NR	rs9292918-?	NR	6E-8				Illumina [up to 5582932] (imputed)	N
930	chr5	45301034	45301035	rs9292918	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	5p12	HCN1	rs9292918-G	NR	1E-9		1.0683761	[1.05-1.09]	Illumina [6627481] (imputed)	N
930	chr5	45301034	45301035	rs9292918	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	5p12	HCN1	rs9292918-G	NR	1E-6	(EA)	1.0699764	[1.04-1.1]	Illumina [6627481] (imputed)	N
930	chr5	45301034	45301035	rs9292918	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	5p12	HCN1	rs9292918-G	NR	4E-11		1.0729614	[1.05-1.09]	Affymetrix, Illumina [up to 5107227] (imputed)	N
930	chr5	45301034	45301035	rs9292918	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	5p12	HCN1	rs9292918-?		5E-8		1.0638298	[1.04-1.1]	Affymetrix, Illumina [NR]	N
930	chr5	45305614	45305615	rs6874127	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	5p12	NR	rs6874127-?	NR	9E-13		1.0710077	[1.05-1.09]	Affymetrix, Illumina [12447948] (imputed)	N
930	chr5	45320126	45320127	rs76323355	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5p12	NR	rs76323355-G	0.0122	2E-8	(USP5)	0.1833	NR unit increase	Illumina [1671387] (imputed)	N
930	chr5	45326772	45326773	rs1501361	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	5p12	HCN1	rs1501361-?		4E-8				NR [6786993] (imputed)	N
930	chr5	45333859	45333860	rs55821517	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Breast cancer	17,881 European ancestry cases, 410,350 European ancestry controls	NA	5p12		rs55821517-T	NR	3E-9		1.0813	NR	Affymetrix [7846216] (imputed)	N
930	chr5	45333859	45333860	rs55821517	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	5p12	NR	rs55821517-C	0.266	5E-19	(EA)	0.0639	[0.05-0.078] unit decrease	Illumina [~ 11800000] (imputed)	N
931	chr5	45364874	45364875	rs1501357	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	5p12	NR	rs1501357-C	NR	1E-8		1.0752687	[NR]	Illumina [7158791] (imputed)	N
931	chr5	45364874	45364875	rs1501357	25056061	Ripke S	2014-07-22	Nature	Biological insights from 108 schizophrenia-associated genetic loci.	Schizophrenia	32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	1,513 European ancestry cases, 66,236 European ancestry controls	5p12	HCN1	rs1501357-C	0.198	5E-9		1.0799136	[1.05-1.11]	Affymetrix, Illumina [9005918] (imputed)	N
931	chr5	45374889	45374890	rs56826596	32424353	Zhang H	2020-05-18	Nat Genet	Genome-wide association study identifies 32 novel breast cancer susceptibility loci from overall and subtype-specific analyses.	Invasive breast cancer	106,278 European ancestry cases, 91,477 European ancestry controls	NA	5p12	NR	rs56826596-?	NR	8E-12	(mixed effect)			Illumina [~ 9700000] (imputed)	N
931	chr5	45393753	45393754	rs10045420	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	5p12		rs10045420-?	NR	1E-10				NR [~ 8900000] (imputed)	N
931	chr5	45427936	45427937	rs72762052	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Breast cancer	10,682 White British ancestry cases, 138,504 White British ancestry controls	NA	5p12		rs72762052-?	NR	7E-7		0.90123	[0.86-0.94]	NR [682398]	N
931	chr5	45479894	45479895	rs76550486	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	5p12	HCN1	rs76550486-A	0.998	4E-6	(AA)	0.31	unit increase	Illumina [NR] (imputed)	N
932	chr5	45491723	45491724	rs75150349	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	5p12	FGF10, HCN1	rs75150349-?		1E-13				Affymetrix, Illumina [NR] (imputed)	N
932	chr5	45522978	45522979	rs139424826	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	5p12	NR	rs139424826-A	0.15	5E-13	(EA)	0.0657	[0.048-0.084] unit decrease	Illumina [~ 11800000] (imputed)	N
933	chr5	45653911	45653912	rs2589161	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	5p12	NR	rs2589161-C	0.4172	3E-8	(EA)	0.0348	[0.022-0.047] unit increase	Illumina [~ 11800000] (imputed)	N
934	chr5	45751535	45751536	rs10044479	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling fed-up	374,971 European ancestry individuals	NA	5p12	HCN1	rs10044479-C	0.436241	2E-9		5.97	z score decrease	NR [10847151] (imputed)	N
934	chr5	45757304	45757305	rs1852599	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Breast cancer	17,881 European ancestry cases, 410,350 European ancestry controls	NA	5p12		rs1852599-C	NR	2E-8		1.0896807	NR	Affymetrix [7846216] (imputed)	N
934	chr5	45757560	45757561	rs56388524	27622933	Li QS	2016-09-13	Transl Psychiatry	Analysis of 23andMe antidepressant efficacy survey data: implication of circadian rhythm and neuroplasticity in bupropion response.	Non-response to bupropion and depression	1,861 European ancestry non-responder cases, 192,070 European ancestry healthy controls	NA	5p12	HCN1	rs56388524-?		7E-7		1.798	[1.451-2.228]	Illumina [~ 12000000] (imputed)	N
934	chr5	45770481	45770482	rs140065777	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	5p12	Intergenic	rs140065777-T	0.999	4E-6	(AA)	0.312	unit increase	Illumina [NR] (imputed)	N
934	chr5	45801145	45801146	rs4274987	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Neuroticism	170,911 European ancestry individuals	NA	5p12	NR	rs4274987-T	0.409	3E-6		0.01677258	[0.0097-0.0238] unit increase	Affymetrix [up to 6544775] (imputed)	N
934	chr5	45802078	45802079	rs4276421	28794112	Christophersen IE	2017-08-01	Circ Cardiovasc Genet	Fifteen Genetic Loci Associated With the Electrocardiographic P Wave.	P wave duration	37,678 European ancestry individuals, 6,778 African ancestry individuals	NA	5p12	HCN1	rs4276421-C	0.44	4E-12		0.58	[0.42-0.74] ms increase	Affymetrix, Illumina [at least 2402234] (imputed)	N
934	chr5	45802078	45802079	rs4276421	28794112	Christophersen IE	2017-08-01	Circ Cardiovasc Genet	Fifteen Genetic Loci Associated With the Electrocardiographic P Wave.	P wave duration	37,678 European ancestry individuals, 6,778 African ancestry individuals	NA	5p12	HCN1	rs4276421-C	0.42	1E-11	(EA)	0.61	[0.43-0.79] ms increase	Affymetrix, Illumina [at least 2402234] (imputed)	N
934	chr5	45803150	45803151	rs10069793	32602732	Baldassari AR	2020-06-30	Circ Genom Precis Med	Multi-ethnic Genome-wide Association Study of Decomposed Cardioelectric Phenotypes Illustrates Strategies to Identify and Characterize Evidence of Shared Genetic Effects for Complex Traits.	Electrocardiographic traits (multivariate)	17,873 European ancestry individuals, 12,749 Hispanic individuals, 5,408 African American individuals, 315 Chinese-American individuals	NA	5p12	HCN1	rs10069793-?	NR	1E-11				Affymetrix, Illumina [22000000] (imputed)	N
934	chr5	45831489	45831490	rs180976407	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	5p12	Intergenic	rs180976407-G	0.999	4E-6	(AA)	0.319	unit increase	Illumina [NR] (imputed)	N
934	chr5	45835258	45835259	rs144223816	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	5p12	NR	rs144223816-G	NR	5E-6		1.0526316	[NR]	Illumina [7158791] (imputed)	N
934	chr5	45846619	45846620	rs72765759	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Breast cancer	10,682 White British ancestry cases, 138,504 White British ancestry controls	NA	5p12		rs72765759-?	NR	9E-7		0.899374	[0.86-0.94]	NR [682398]	N
934	chr5	45846619	45846620	rs72765759	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	5p12	NR	rs72765759-T	0.1345	6E-13	(EA)	0.0693	[0.05-0.088] unit decrease	Illumina [~ 11800000] (imputed)	N
934	chr5	45849728	45849729	rs10941710	25993607	de Moor MH	2015-05-20	JAMA Psychiatry	Meta-analysis of Genome-wide Association Studies for Neuroticism, and the Polygenic Association With Major Depressive Disorder.	Neuroticism	Up to 627 Cilento (founder/genetic isolate) individuals, up to 2,296 Erasmus Rucphen (founder/genetic isolate) individuals, up to 1,650 Orcadian (founder/genetic isolate) individuals, up to 909 Vis (founder/genetic isolate) individuals, up to 58,179 European ancestry individuals	Up to 9,786 European ancestry individuals	5p12	NR	rs10941710-A	NR	8E-6		0.032	[0.018-0.046] unit decrease	Affymetrix, Illumina, Perlegen [6949614] (imputed)	N
934	chr5	45858967	45858968	rs191414751	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	5p12	Intergenic	rs191414751-C	0.999	4E-6	(AA)	0.32	unit increase	Illumina [NR] (imputed)	N
934	chr5	45864842	45864843	rs10039283	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	5p12	HCN1	rs10039283-A	0.41	3E-23		0.64	[0.52-0.76] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
934	chr5	45864842	45864843	rs10039283	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	5p12	HCN1	rs10039283-A	0.4001	1E-20		0.6318	[0.5-0.76] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
934	chr5	45868176	45868177	rs184606651	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	5p12	Intergenic	rs184606651-G	0.999	4E-6	(AA)	0.32	unit increase	Illumina [NR] (imputed)	N
935	chr5	45888374	45888375	rs192419686	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	5p12	Intergenic	rs192419686-T	0.999	4E-6	(AA)	0.321	unit increase	Illumina [NR] (imputed)	N
935	chr5	45904133	45904134	rs13355485	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	5p12	NR	rs13355485-?	NR	5E-10		1.0641807	[1.04-1.08]	Affymetrix, Illumina [12447948] (imputed)	N
935	chr5	45904355	45904356	rs184759447	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	5p12	Intergenic	rs184759447-T	0.999	4E-6	(AA)	0.324	unit increase	Illumina [NR] (imputed)	N
935	chr5	45939293	45939294	rs139331653	32424353	Zhang H	2020-05-18	Nat Genet	Genome-wide association study identifies 32 novel breast cancer susceptibility loci from overall and subtype-specific analyses.	Invasive breast cancer	106,278 European ancestry cases, 91,477 European ancestry controls	NA	5p12	NR	rs139331653-?	NR	2E-9	(mixed effect)			Illumina [~ 9700000] (imputed)	N
935	chr5	45965779	45965780	rs79767800	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	5p12	HCN1	rs79767800-T	0.2129	4E-9		0.013978026	[0.0093-0.0186] unit increase	Illumina [9339358] (imputed)	N
935	chr5	45972352	45972353	rs189178057	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	5p12	Intergenic	rs189178057-C	0.999	3E-6	(AA)	0.331	unit increase	Illumina [NR] (imputed)	N
935	chr5	45984432	45984433	rs72751936	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	5p12	NR	rs72751936-A	0.1354	4E-12	(EA)	0.0667	[0.048-0.086] unit decrease	Illumina [~ 11800000] (imputed)	N
935	chr5	46004639	46004640	rs113338260	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	5p12	HCN1	rs113338260-T	0.786	8E-13		0.0103	[0.0076-0.013] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
935	chr5	46006045	46006046	rs145901335	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Breast cancer	10,682 White British ancestry cases, 138,504 White British ancestry controls	NA	5p12		rs145901335-?	NR	4E-7		0.892376	[0.85-0.94]	NR [682398]	N
936	chr5	46016916	46016917	rs13168838	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	5p12	NR	rs13168838-C	NR	1E-8		5.668	z score decrease	Affymetrix [10847151] (imputed)	N
936	chr5	46016916	46016917	rs13168838	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	5p12	NR	rs13168838-C	0.43863	1E-8		5.67	z score decrease	NR [10847151] (imputed)	N
936	chr5	46069342	46069343	rs4421114	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling fed-up	374,971 European ancestry individuals	NA	5p12	NR	rs4421114-T	0.441443	2E-8		5.64	z score increase	NR [10847151] (imputed)	N
936	chr5	46090141	46090142	rs35255819	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Irritable mood	366,726 European ancestry individuals	NA	5p12	HCN1	rs35255819-A	0.126442	3E-9		5.94	z score decrease	NR [~ 10847151] (imputed)	N
936	chr5	46090550	46090551	rs72755643	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	5p12	NR	rs72755643-G	0.1333	3E-11	(EA)	0.0652	[0.046-0.084] unit decrease	Illumina [~ 11800000] (imputed)	N
936	chr5	46096988	46096989	rs74945986	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5p12	NR	rs74945986-A	0.01045	4E-10	(STAT1)	0.09858	NR unit increase	Illumina [1671387] (imputed)	N
936	chr5	46096988	46096989	rs74945986	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5p12	NR	rs74945986-A	0.01045	3E-8	(USP5)	0.1414	NR unit increase	Illumina [1671387] (imputed)	N
936	chr5	46117610	46117611	rs77655443	25839716	Ng E	2015-04-02	Environ Res	Genome-wide association study of plasma levels of polychlorinated biphenyls disclose an association with the CYP2B6 gene in a population-based sample.	Polychlorinated biphenyl levels	922 European ancestry individuals	NA	5p11	NR	rs77655443-?		1E-7	(PCB74)	1.17	[0.74-1.6] unit decrease	Illumina [8736858] (imputed)	N
937	chr5	46165125	46165126	rs74366100	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	5p11	HCN1	rs74366100-T	0.9331	3E-8		0.026366662	[0.017-0.036] unit decrease	Affymetrix [11515109] (imputed)	N
937	chr5	46204747	46204748	rs8188241	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	5p11	NR	rs8188241-G	0.5955	2E-8		0.0232	[0.015-0.031] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
937	chr5	46219183	46219184	rs150350430	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	5p11	NR	rs150350430-G	0.01	2E-6		1.57	[1.39-1.75]	Illumina [8468885] (imputed)	N
937	chr5	46219183	46219184	rs150350430	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Squamous cell lung carcinoma	7,426 European ancestry cases, 55,627 European ancestry controls	NA	5p11	HCN1, NONE	rs150350430-G	0.017475389	3E-6		1.5654097	[1.29677532-1.889693062]	Illumina [10439017] (imputed)	N
937	chr5	46231753	46231754	rs8185050	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	5p11		rs8185050-T	NR	1E-8		0.0178	[0.012-0.024] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
937	chr5	46263542	46263543	rs8175379	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-7 levels	3,409 Finnish ancestry individuals	NA	5p11	NR	rs8175379-T		4E-6		0.1307	[0.075-0.187] SD units decrease	NR [10700000] (imputed)	N
938	chr5	46294525	46294526	rs116020511	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5p11	NR	rs116020511-A	0.01045	4E-10	(STAT1)	0.09858	NR unit increase	Illumina [1671387] (imputed)	N
938	chr5	46294525	46294526	rs116020511	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5p11	NR	rs116020511-A	0.01045	3E-8	(USP5)	0.1414	NR unit increase	Illumina [1671387] (imputed)	N
938	chr5	46349703	46349704	rs13358908	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	5p11	NR	rs13358908-C	NR	5E-7		1.0526316	[NR]	Illumina [7158791] (imputed)	N
938	chr5	46394370	46394371	rs142427110	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	5p11	NR	rs142427110-A	0.1376	1E-12	(EA)	0.069	[0.05-0.088] unit decrease	Illumina [~ 11800000] (imputed)	N
962	chr5	49440205	49440206	rs8185308	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	5q11.1	EMB	rs8185308-T	0.26515	4E-9		0.014623	[0.0096-0.0196] unit decrease	NR [16516521] (imputed)	N
962	chr5	49443289	49443290	rs12520174	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Coronary artery disease in dyslipidemia	768 Korean ancestry cases, 19,999 Korean ancestry controls	NA	5q11.1		rs12520174-G	0.4604	6E-6		0.7857	[0.7076-0.8725]	Affymetrix [7975321] (imputed)	N
962	chr5	49457281	49457282	rs8188203	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	5q11.1	NR	rs8188203-?	NR	8E-11		1.05665	[1.04-1.07]	Affymetrix, Illumina [12447948] (imputed)	N
963	chr5	49612773	49612774	rs72749824	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels	1,446 Hispanics ancestry individuals	NA	5q11.1		rs72749824-?	NR	5E-6		0.82	[0.47-1.17] unit increase	Affymetrix [NR] (imputed)	N
963	chr5	49620549	49620550	rs72749828	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	5q11.1	NR	rs72749828-?	NR	2E-6	(AA)	0.8801	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
963	chr5	49626918	49626919	rs35567312	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	5q11.1	EMB	rs35567312-?		7E-10				Affymetrix, Illumina [NR] (imputed)	N
963	chr5	49636752	49636753	rs10940235	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Coronary artery disease in dyslipidemia	768 Korean ancestry cases, 19,999 Korean ancestry controls	NA	5q11.1		rs10940235-T	0.4571	8E-6		0.7881	[0.7097-0.8752]	Affymetrix [7975321] (imputed)	N
963	chr5	49641644	49641645	rs72749841	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	5q11.1	intergenic	rs72749841-T	0.84	7E-10	(EA)	1.0752687	[1.04-1.1] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
964	chr5	49687696	49687697	rs4340921	32602732	Baldassari AR	2020-06-30	Circ Genom Precis Med	Multi-ethnic Genome-wide Association Study of Decomposed Cardioelectric Phenotypes Illustrates Strategies to Identify and Characterize Evidence of Shared Genetic Effects for Complex Traits.	Electrocardiographic traits (multivariate)	17,873 European ancestry individuals, 12,749 Hispanic individuals, 5,408 African American individuals, 315 Chinese-American individuals	NA	5q11.1	EMB	rs4340921-C	NR	5E-9				Affymetrix, Illumina [22000000] (imputed)	N
964	chr5	49715366	49715378	rs199500772	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	5q11.1		rs199500772-T	0.089410217	2E-8		0.09328281	[0.061-0.126] unit increase	Illumina [13429769] (imputed)	N
964	chr5	49715366	49715378	rs199500772	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	5q11.1		rs199500772-T	NR	2E-8		0.0933	[0.061-0.126] unit increase	Affymetrix, Illumina [25845091] (imputed)	N
964	chr5	49737222	49737223	rs72751723	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	5q11.1		rs72751723-T	0.069009826	2E-8		1.1128823	[1.072143173-1.155169253]	Illumina [8919992] (imputed)	N
964	chr5	49786853	49786853	rs145106188	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	5q11.1	NR	rs145106188-CT	0.4459	3E-7	(EA)	0.0343	[0.021-0.047] unit decrease	Illumina [~ 11800000] (imputed)	N
964	chr5	49806041	49806042	rs10940346	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	5q11.1	EMB	rs10940346-G	NR	2E-7		1.049318	[1.03-1.07]	Illumina [6627481] (imputed)	N
964	chr5	49806041	49806042	rs10940346	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	5q11.1	EMB	rs10940346-G	NR	1E-8		1.0537407	[1.04-1.07]	Affymetrix, Illumina [up to 5107227] (imputed)	N
965	chr5	49830285	49830286	rs76329678	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	5q11.1	NR	rs76329678-A	NR	6E-7		1.05	[NR]	Illumina [7158791] (imputed)	N
965	chr5	49836203	49836204	rs7728093	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	5q11.1		rs7728093-?	NR	2E-8				NR [~ 8900000] (imputed)	N
965	chr5	49848297	49848298	rs3857298	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	Composite immunoglobulin trait (IgA/IgM)	14,183 Icelandic ancestry individuals	2,146 Swedish ancestry individuals	5q11.1	EMB	rs3857298-A	0.3726	7E-8		0.07	NR SD units decrease	Illumina [21568490] (imputed)	N
965	chr5	49853912	49853913	rs13187983	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5q11.1	EMB	rs13187983-?	NR	8E-6	(fum; mal; alpha keto)	0.23616771	[0.13-0.34] unit increase	Affymetrix [at least 2500000] (imputed)	N
965	chr5	49856100	49856101	rs1423648	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	5q11.1		rs1423648-G	NR	1E-11		0.0149	[0.011-0.019] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
965	chr5	49856100	49856101	rs1423648	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	5q11.1		rs1423648-G	NR	1E-10		0.0157	[0.011-0.02] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
965	chr5	49856100	49856101	rs1423648	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	5q11.1		rs1423648-?	NR	2E-7				NR [~ 8900000] (imputed)	N
965	chr5	49865158	49865159	rs13165648	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5q11.1	EMB	rs13165648-?	NR	9E-6	(glutamate)	0.24042165	[0.13-0.35] unit increase	Affymetrix [at least 2500000] (imputed)	N
965	chr5	49933087	49933088	rs10940455	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Coronary artery disease in dyslipidemia	768 Korean ancestry cases, 19,999 Korean ancestry controls	NA	5q11.1		rs10940455-T	0.3435	5E-6		0.7689	[0.6868-0.8607]	Affymetrix [7975321] (imputed)	N
966	chr5	49953458	49953459	rs16884025	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	46,511 Asian ancestry cases, 169,776 Asian ancestry controls	NA	5q11.1	NR	rs16884025-C	0.9291	8E-9		0.1297	[0.086-0.174] unit increase	Affymetrix, Illumina [1077427] (imputed)	N
966	chr5	49953458	49953459	rs16884025	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	5q11.1	PARP8, EMB	rs16884025-C	0.93	8E-9		1.14	1.09-1.19	Illumina [12557761] (imputed)	N
966	chr5	49958362	49958363	rs34674487	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	5q11.1		rs34674487-?	NR	7E-9				NR [~ 8900000] (imputed)	N
966	chr5	50023373	50023374	rs10737958	32599975	Bae JS	2020-06-30	Cancer Res Treat	Genome-Wide Association Study for the Identification of Novel Genetic Variants Associated with the Risk of Neuroblastoma in Korean Children.	Neuroblastoma (pediatric)	296 Korean ancestry child cases, 1,000 Korean ancestry adult controls	NA	5q11.1	(PARP8)	rs10737958-?		7E-12		2.0	[1.6-2.5]	Illumina [NR] (imputed)	N
966	chr5	50026464	50026465	rs282544	22685421	Fan Q	2012-06-07	PLoS Genet	Genetic variants on chromosome 1q41 influence ocular axial length and high myopia.	Myopia (pathological)	2,789 Chinese ancestry individuals, 2,155 Malay ancestry individuals	NA	5q11.1	PARP8	rs282544-C	0.35	4E-6		0.1	[0.061-0.139] mm decrease	Illumina [456634]	N
966	chr5	50058042	50058043	rs282546	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Coronary artery disease in dyslipidemia	768 Korean ancestry cases, 19,999 Korean ancestry controls	NA	5q11.1		rs282546-C	0.3448	5E-6		0.7687	[0.6869-0.8602]	Affymetrix [7975321] (imputed)	N
967	chr5	50079602	50079603	rs74334916	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	5q11.1	PARP8	rs74334916-C	0.075	4E-8		1.07	[1.05-1.10]	Affymetrix, Illumina [11800000] (imputed)	N
967	chr5	50089650	50089651	rs26067	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	5q11.1	NR	rs26067-A	0.6263	2E-8	(EA)	0.0369	[0.024-0.05] unit increase	Illumina [~ 11800000] (imputed)	N
967	chr5	50106438	50106439	rs32396	32599975	Bae JS	2020-06-30	Cancer Res Treat	Genome-Wide Association Study for the Identification of Novel Genetic Variants Associated with the Risk of Neuroblastoma in Korean Children.	Neuroblastoma (pediatric)	296 Korean ancestry child cases, 1,000 Korean ancestry adult controls	NA	5q11.1	(PARP8)	rs32396-?		5E-11		2.0	[1.6-2.4]	Illumina [NR] (imputed)	N
967	chr5	50145265	50145266	rs152839	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	5q11.1	NR	rs152839-C	0.5761	1E-8		0.0263	[0.017-0.035] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
967	chr5	50145265	50145266	rs152839	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	5q11.1	NR	rs152839-C	0.6058	1E-12		0.0281	[0.02-0.036] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
967	chr5	50158738	50158741	rs72575076	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-7 levels	3,409 Finnish ancestry individuals	NA	5q11.1	NR	rs72575076-TCTC		2E-6		0.2677	[0.16-0.38] SD units decrease	NR [10700000] (imputed)	N
967	chr5	50159013	50159014	rs26079	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Coronary artery disease in dyslipidemia	768 Korean ancestry cases, 19,999 Korean ancestry controls	NA	5q11.1		rs26079-C	0.3444	2E-6		0.7617	[0.6804-0.8526]	Affymetrix [7975321] (imputed)	N
967	chr5	50177454	50177455	rs78011035	30098192	Shaaban S	2018-08-01	Invest Ophthalmol Vis Sci	Genome-Wide Association Study Identifies a Susceptibility Locus for Comitant Esotropia and Suggests a Parent-of-Origin Effect.	Hyperopia	361 European ancestry cases, 1,700 European ancestry controls	172 European ancestry cases, 690 European ancestry controls	5q11.1	NR	rs78011035-A	NR	3E-6		2.47	NR	Illumina [6470615] (imputed)	N
967	chr5	50177454	50177455	rs78011035	30098192	Shaaban S	2018-08-01	Invest Ophthalmol Vis Sci	Genome-Wide Association Study Identifies a Susceptibility Locus for Comitant Esotropia and Suggests a Parent-of-Origin Effect.	Amblyopia	386 European ancestry cases, 1,700 European ancestry controls	45 European ancestry cases, 180 European ancestry controls	5q11.1	NR	rs78011035-A	NR	3E-6		2.47	NR	Illumina [6470615] (imputed)	N
967	chr5	50195093	50195093	rs35951924	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	5q11.1		rs35951924-A	NR	3E-10		1.05	[1.03-1.06]	Affymetrix, Illumina [NR] (imputed)	N
967	chr5	50195093	50195093	rs35951924	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	5q11.1	intergenic	rs35951924-A	0.679999999999999	1E-11	(EA)	1.0526316	[1.03-1.08] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
968	chr5	50221953	50221954	rs77110056	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	5q11.1	PARP8	rs77110056-A	0.101	5E-10		0.0122	[0.0083-0.0161] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
968	chr5	50223109	50223110	rs202178099	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	5q11.1	PARP8, EMB	rs202178099-C	0.044	2E-7	(Conditioned)			Illumina [12557761] (imputed)	N
968	chr5	50233198	50233199	rs151997	23874384	Viding E	2013-07-09	PLoS One	Genetics of callous-unemotional behavior in children.	Callous-unemotional behaviour	2,930 European ancestry children	NA	5q11.1	PARP8	rs151997-T	0.382	5E-6				Affymetrix [1724317] (imputed)	N
968	chr5	50254487	50254488	rs3846500	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	5q11.1		rs3846500-?	NR	5E-16				NR [~ 8900000] (imputed)	N
968	chr5	50256206	50256207	rs6870880	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	5q11.1	LOC100287592	rs6870880-G	0.593271	1E-18		0.016998	[0.013-0.021] unit increase	NR [13737936] (imputed)	N
968	chr5	50256206	50256207	rs6870880	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	5q11.1		rs6870880-?	NR	5E-15		0.0168542	[0.013-0.021] unit increase	Affymetrix [20259828] (imputed)	N
968	chr5	50260094	50260095	rs76166785	31596875	Traylor M	2019-10-09	PLoS One	Genetic associations with radiological damage in rheumatoid arthritis: Meta-analysis of seven genome-wide association studies of 2,775 cases.	Joint damage in rheumatoid arthritis	2,527 European ancestry individuals	NA	5q11.1	intergenic	rs76166785-?	NR	3E-6				Affymetrix, Illumina [2723488] (imputed)	N
968	chr5	50263787	50263788	rs1345777	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fish- and plant-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	5q11.1	intergenic	rs1345777-?	NR	4E-8		0.0139853	[0.009-0.019] unit decrease	Affymetrix [25921788] (imputed)	N
968	chr5	50328256	50328257	rs11960470	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	5q11.1	NR	rs11960470-C	0.6236	3E-6	(EA)	0.0308	[0.018-0.044] unit decrease	Illumina [~ 11800000] (imputed)	N
969	chr5	50344549	50344550	rs17819597	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	5q11.1	NR	rs17819597-?	NR	6E-9				Affymetrix [~ 8270000] (imputed)	N
969	chr5	50389990	50389991	rs2962250	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	5q11.1	LOC10028759	rs2962250-G	NR	1E-7	(East Asian)	1.164	[1.11-1.22]	Illumina [6627481] (imputed)	N
969	chr5	50389990	50389991	rs2962250	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	5q11.1	intergenic	rs2962250-A	NR	2E-7	(Chinese)	1.178	[1.12-1.24]	Affymetrix, Illumina [up to 5107227] (imputed)	N
969	chr5	50415768	50415769	rs17820772	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Subjective well-being (MTAG)	388,538 European ancestry individuals	NA	5q11.1	NR	rs17820772-T	0.2875	6E-9		0.0119	[0.0078-0.016] unit increase	Illumina [NR] (imputed)	N
969	chr5	50418924	50418925	rs12055151	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5q11.1		rs12055151-?	NR	1E-11				NR [~ 8900000] (imputed)	N
969	chr5	50428734	50428735	rs148369438	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cerebral amyloid deposition in APOEe4 non-carriers (PET imaging)	370 European and other ancestry APOEe4 non-carriers	NA	5q11.1	PARP8, LOC642366	rs148369438-G	0.01	8E-8		0.3615	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
969	chr5	50443062	50443063	rs2961817	30940813	Kranzler HR	2019-04-02	Nat Commun	Genome-wide association study of alcohol consumption and use disorder in 274,424 individuals from multiple populations.	Alcohol use disorder (consumption score)	200,680 European American individuals, 56,495 African American individuals, 14,112 Latino American individuals, 1,366 East Asian American individuals, 189 South Asian American individuals	NA	5q11.1	ISL1	rs2961817-A	0.657	7E-9	(EA)	0.03316	[0.022-0.044] unit increase	Affymetrix [up to 12500000] (imputed)	N
969	chr5	50443690	50443691	rs2961816	30940813	Kranzler HR	2019-04-02	Nat Commun	Genome-wide association study of alcohol consumption and use disorder in 274,424 individuals from multiple populations.	Alcohol use disorder (consumption score)	200,680 European American individuals, 56,495 African American individuals, 14,112 Latino American individuals, 1,366 East Asian American individuals, 189 South Asian American individuals	NA	5q11.1	ISL1	rs2961816-A	0.683	1E-8		5.74	NR z score increase	Affymetrix [up to 12500000] (imputed)	N
969	chr5	50449813	50449814	rs2962246	30369944	Balakrishnan P	2018-10-12	Front Genet	Genetic Variants Related to Cardiometabolic Traits Are Associated to B Cell Function, Insulin Resistance, and Diabetes Among AmeriCan Indians: The Strong Heart Family Study.	HOMA-B (corrected for HOMA-IR)	1,892 American Indian ancestry individuals	NA	5q11.1	PARP8, LOC642366	rs2962246-?	0.4	6E-9		23.11	unit increase	Illumina [120975] (imputed)	N
969	chr5	50454932	50454933	rs2961831	30369944	Balakrishnan P	2018-10-12	Front Genet	Genetic Variants Related to Cardiometabolic Traits Are Associated to B Cell Function, Insulin Resistance, and Diabetes Among AmeriCan Indians: The Strong Heart Family Study.	HOMA-B (corrected for HOMA-IR)	1,892 American Indian ancestry individuals	NA	5q11.1	PARP8, LOC642366	rs2961831-?	0.4	6E-9		23.11	unit increase	Illumina [120975] (imputed)	N
969	chr5	50457243	50457244	rs190157126	29213071	Mendez-Giraldez R	2017-12-06	Sci Rep	GWAS of the electrocardiographic QT interval in Hispanics/Latinos generalizes previously identified loci and identifies population-specific signals.	QT interval	15,997 Hispanic/Latino individuals	NA	5q11.1	ISL1	rs190157126-A	0.01	3E-6		13.5	[7.82-19.18] ms decrease	Affymetrix, Illumina [up to 17586686] (imputed)	N
970	chr5	50478827	50478828	rs4373244	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	5q11.1		rs4373244-G	NR	3E-10		0.0086	[0.0059-0.0113] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
970	chr5	50484861	50484862	rs62365447	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms (MTAG)	354,862 European ancestry individuals	NA	5q11.1	NR	rs62365447-T	0.7869	4E-8		0.0142	[0.0091-0.0193] unit increase	Illumina [NR] (imputed)	N
970	chr5	50492628	50492629	rs17223714	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	5q11.1	NR	rs17223714-A	0.7885	2E-10		1.047	[1.03-1.06]	Affymetrix, Illumina [NR] (imputed)	N
970	chr5	50492628	50492629	rs17223714	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	5q11.1	NA	rs17223714-A	0.7885	2E-9	(Male)	1.074	[1.05-1.1]	Affymetrix, Illumina [NR] (imputed)	N
970	chr5	50500627	50500628	rs1039440	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	5q11.1		rs1039440-G	0.153098	1E-8		0.0163913	[0.011-0.022] unit increase	Illumina [13479295] (imputed)	N
970	chr5	50500627	50500628	rs1039440	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	5q11.1	LOC100287592, LOC642366	rs1039440-?	NR	9E-9		0.02320223	[0.015-0.031] unit increase	Illumina [27896057] (imputed)	N
970	chr5	50524864	50524865	rs77213706	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia	11,197 European ancestry low myopic cases, 21,416 European ancestry emmetropia controls	NA	5q11.1	NR	rs77213706-?	NR	8E-6		0.458026	[0.26-0.66] unit increase	NR [13958389] (imputed)	N
970	chr5	50529174	50529175	rs13360092	25648963	Debette S	2014-11-25	Biol Psychiatry	Genome-wide studies of verbal declarative memory in nondemented older people: the Cohorts for Heart and Aging Research in Genomic Epidemiology consortium.	Verbal declarative memory	Up to 27,337 European ancestry individuals, up to 472 Korkulan individuals, up to 1,267 Erasmus Rucphen Family individuals	Up to 10,617 European ancestry individuals, up to 3,811 African American individuals	5q11.1	ISL1, PARP8	rs13360092-A	0.07	3E-8	(CVLT-dr, EA)	0.7655	[0.5-1.04] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
970	chr5	50553712	50553713	rs181043390	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	5q11.1	LOC642366	rs181043390-T	0.99251	4E-10		0.0665382	[0.046-0.087] unit decrease	NR [13737936] (imputed)	N
970	chr5	50555168	50555169	rs10058621	25648963	Debette S	2014-11-25	Biol Psychiatry	Genome-wide studies of verbal declarative memory in nondemented older people: the Cohorts for Heart and Aging Research in Genomic Epidemiology consortium.	Verbal declarative memory	Up to 27,337 European ancestry individuals, up to 472 Korkulan individuals, up to 1,267 Erasmus Rucphen Family individuals	Up to 10,617 European ancestry individuals, up to 3,811 African American individuals	5q11.1	ISL1, PARP8	rs10058621-C	0.07	1E-6	(CVLT_HVLT-dr, EA)			Affymetrix, Illumina [NR] (imputed)	N
970	chr5	50590194	50590195	rs7349819	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	5q11.1		rs7349819-?	NR	5E-16		0.0176002	[0.013-0.022] unit increase	Affymetrix [20259828] (imputed)	N
971	chr5	50596499	50596500	rs17339448	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	5q11.1		rs17339448-?	NR	6E-8				NR [~ 8900000] (imputed)	N
971	chr5	50600176	50600177	rs10066412	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	5q11.1	LOC642366	rs10066412-A	0.576401	2E-17		0.0167451	[0.013-0.021] unit increase	NR [13737936] (imputed)	N
971	chr5	50631990	50631991	rs62366894	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	5q11.1	NR	rs62366894-?	NR	3E-7		0.0588	[0.036-0.081] unit decrease	Illumina [at least 560000] (imputed)	N
971	chr5	50631990	50631991	rs62366894	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	5q11.1	PARP8, ISL1	rs62366894-?	NR	3E-7		1.0604454	[1.04-1.08]	Illumina [13754664] (imputed)	N
971	chr5	50634877	50634878	rs6449586	24121790	Levine DM	2013-10-13	Nat Genet	A genome-wide association study identifies new susceptibility loci for esophageal adenocarcinoma and Barrett's esophagus.	Barrett's esophagus	2,416 European ancestry cases, 3,206 European ancestry controls	759 European ancestry cases, 6,911 European ancestry controls	5q11.1	NR	rs6449586-A	0.553	1E-6		1.1628	[1.1-1.25]	Illumina [922031]	N
971	chr5	50659787	50659788	rs4865656	29899525	Klimentidis YC	2018-06-13	Int J Obes (Lond)	Genome-wide association study of habitual physical activity in over 377,000 UK Biobank participants identifies multiple variants including CADM2 and APOE.	Strenuous sports or other exercises	124,842 European ancestry active cases, 225,650 European ancestry inactive controls	NA	5q11.1	LOC642366	rs4865656-G	0.62	3E-9	(model 2)	1.03		Affymetrix [11800000] (imputed)	N
971	chr5	50661600	50661601	rs4865512	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	5q11.1	ISL1	rs4865512-A	0.616	9E-14		0.009	[0.0066-0.0114] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
971	chr5	50685504	50685505	rs2303751	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	5q11.1	NR	rs2303751-G	0.385	2E-13		0.00816615	[0.006-0.0103] unit decrease	NR [9732723] (imputed)	N
971	chr5	50717792	50717793	rs9291768	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	5q11.2	NR	rs9291768-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
971	chr5	50717792	50717793	rs9291768	25763902	Draaken M	2015-03-12	PLoS Genet	Genome-wide association study and meta-analysis identify ISL1 as genome-wide significant susceptibility gene for bladder exstrophy.	Classic bladder exstrophy	208 European ancestry cases, 1,703 European ancestry controls	NA	5q11.2	ISL1, LOC642366	rs9291768-T	0.377	2E-12		2.18	[1.75-2.71]	Illumina [7261187] (imputed)	N
972	chr5	50726026	50726027	rs62368263	33888516	Zheng T	2021-04-22	Gut	Genome-wide analysis of 944 133 individuals provides insights into the etiology of haemorrhoidal disease.	Haemorrhoidal disease	218,920 European ancestry cases, 725,213 European ancestry controls	NA	5q11.2	ISL1	rs62368263-?	0.14259999999999995	6E-15		0.96	[0.95-0.97]	Affymetrix, Illumina [8494288] (imputed)	N
972	chr5	50731379	50731380	rs7714281	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	5q11.2		rs7714281-T	0.622	1E-18		0.011	[0.009-0.013] unit increase	NR [NR] (imputed)	N
972	chr5	50735306	50735307	rs75282042	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	5q11.2	NR	rs75282042-C	0.0247	2E-6	(EA)	0.0971	[0.057-0.137] unit increase	Illumina [~ 11800000] (imputed)	N
972	chr5	50747501	50747502	rs10939963	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	5q11.2	ISL1	rs10939963-A	0.612	1E-10		0.01697561	[0.012-0.022] unit increase	Affymetrix [~ 11515000] (imputed)	N
972	chr5	50754546	50754547	rs62368272	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	5q11.2	NR	rs62368272-?	NR	3E-8	(left putamen)			NR [9227495] (imputed)	N
972	chr5	50769983	50769984	rs77452143	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q11.2	NR	rs77452143-C	0.01394	1E-8	(OAT)	0.05943	NR unit increase	Illumina [1671387] (imputed)	N
972	chr5	50778797	50778798	rs16878921	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	5q11.2	ISL1	rs16878921-G	0.902566	2E-15		0.025768	[0.019-0.032] unit decrease	NR [13737936] (imputed)	N
972	chr5	50788265	50788266	rs56767241	34620984	Skuladottir AT	2021-10-07	Commun Biol	A genome-wide meta-analysis uncovers six sequence variants conferring risk of vertigo.	Vertigo	48,072 European ancestry cases, 894,541 European ancestry controls	NA	5q11.2		rs56767241-A	NR	1E-7		1.04571		Affymetrix, Illumina [62056310] (imputed)	N
972	chr5	50791086	50791087	rs77972482	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	5q11.2		rs77972482-?	NR	2E-24		0.0360542	[0.029-0.043] unit decrease	Affymetrix [20259828] (imputed)	N
972	chr5	50791313	50791314	rs62365472	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	5q11.2		rs62365472-?	NR	1E-25				NR [~ 8900000] (imputed)	N
972	chr5	50794220	50794221	rs1559278	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	5q11.2		rs1559278-?	NR	1E-8				NR [~ 8900000] (imputed)	N
972	chr5	50799238	50799239	rs72765634	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	316,772 European ancestry male individuals	NA	5q11.2	NR	rs72765634-T	0.041	4E-6		0.0227	[0.013-0.032] unit decrease	NR [~ 27400000] (imputed)	N
972	chr5	50801563	50801564	rs1423617	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	5q11.2	NR	rs1423617-?	NR	3E-6		0.049	[0.028-0.07] unit decrease	Illumina [at least 560000] (imputed)	N
972	chr5	50803800	50803801	rs62365476	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	5q11.2	NR	rs62365476-?		1E-12				NR [7428630] (imputed)	N
972	chr5	50803800	50803801	rs62365476	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	5q11.2	ISL1	rs62365476-?		4E-11				NR [7428630] (imputed)	N
972	chr5	50812737	50812738	rs10052591	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	5q11.2		rs10052591-T	0.573	2E-9		0.012	[0.0081-0.0159] unit increase	Affymetrix [up to 90000000] (imputed)	N
972	chr5	50821337	50821338	rs986714	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	5q11.2	NR	rs986714-T	0.445	4E-10		0.01603081	[0.011-0.021] unit decrease	NR [~ 10000000] (imputed)	N
972	chr5	50828865	50828866	rs6896357	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Automobile speeding propensity	404,291 European ancestry individuals	NA	5q11.2	ISL1	rs6896357-T	0.6484	9E-9		0.013553679	[0.0089-0.0182] unit increase	Affymetrix [11514463] (imputed)	N
972	chr5	50840435	50840436	rs1946265	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fish- and plant-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	5q11.2	intergenic	rs1946265-?	NR	5E-9		0.014904	[0.0099-0.0199] unit increase	Affymetrix [25921788] (imputed)	N
972	chr5	50845721	50845722	rs79245542	34226506	Cox J	2021-06-29	Transl Psychiatry	Genome-wide association study of stimulant dependence.	Stimulant dependence	155 African American or Afro-Caribbean cases, 5,603 African American or Afro-Caribbean controls	53 African American or Afro-Caribbean cases, 3,299 African American or Afro-Caribbean controls	5q11.2		rs79245542-A	NR	2E-6		0.4		Illumina [NR] (imputed)	N
972	chr5	50847576	50847577	rs35711462	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	5q11.2		rs35711462-?	NR	3E-8				NR [~ 8900000] (imputed)	N
972	chr5	50851537	50851538	rs76375990	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	5q11.2	NR	rs76375990-C	0.0248	1E-6	(EA)	0.098	[0.058-0.138] unit increase	Illumina [~ 11800000] (imputed)	N
973	chr5	50864787	50864788	rs6861649	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	5q11.2		rs6861649-?	NR	1E-11				NR [~ 8900000] (imputed)	N
973	chr5	50878291	50878292	rs6875967	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	5q11.2		rs6875967-G	NR	5E-8		0.0112	[0.0073-0.0151] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
973	chr5	50878620	50878621	rs6876477	33045005	Vogelezang S	2020-10-12	PLoS Genet	Novel loci for childhood body mass index and shared heritability with adult cardiometabolic traits.	Childhood body mass index	39,620 European ancestry individuals	NA	5q11.2	ISL1	rs6876477-A	0.76	3E-6		0.041	[0.023-0.059] unit increase	Affymetrix, Illumina [8227808] (imputed)	N
973	chr5	50905845	50905846	rs62365541	34054130	Bralten J	2021-05-30	Neuropsychopharmacology	Genetic underpinnings of sociability in the general population.	Worry too long after an embarrassing experience	342,461 European ancestry individuals	NA	5q11.2	CTD-2335O3.3	rs62365541-?	NR	3E-6				Affymetrix [up to 9327396] (imputed)	N
973	chr5	50905845	50905846	rs62365541	34054130	Bralten J	2021-05-30	Neuropsychopharmacology	Genetic underpinnings of sociability in the general population.	Sociability score	342,461 European ancestry individuals	NA	5q11.2	CTD-2335O3.3	rs62365541-A	NR	2E-11		0.01511	unit decrease	Affymetrix [9327396] (imputed)	N
973	chr5	50914725	50914726	rs12189178	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	5q11.2	NA	rs12189178-T	0.0343	4E-14		0.0348	[0.026-0.044] unit increase	NR [~ 27400000] (imputed)	N
973	chr5	50928809	50928810	rs4865673	23259602	Wang X	2012-12-21	BMC Oral Health	Genome-wide association scan of dental caries in the permanent dentition.	Dental caries	1,483 European ancestry comparatively younger individuals, 5,960 European ancestry comparatively older individuals	NA	5q11.2	ISL1	rs4865673-?	NR	9E-6	(Comparatively Younger)			Affymetrix, Illumina [~ 1400000] (imputed)	N
973	chr5	50932342	50932343	rs114263339	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		5q11.2	ISL1	rs114263339-C	0.974247	5E-9		0.0252802	[0.017-0.034] unit decrease	Affymetrix [12370749]	N
973	chr5	50935899	50935900	rs168643	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	5q11.2	ISL1, PELO	rs168643-T		9E-7		0.196	unit increase	Affymetrix [at least 2696785] (imputed)	N
973	chr5	50935899	50935900	rs168643	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	5q11.2	ISL1, PELO	rs168643-T		2E-8		0.139	unit increase	Affymetrix [at least 2696785] (imputed)	N
973	chr5	50935902	50935903	rs150215901	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	5q11.2	NR	rs150215901-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
973	chr5	50957443	50957444	rs79125854	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	5q11.2	NR	rs79125854-?	NR	4E-11				Affymetrix [~ 8270000] (imputed)	N
973	chr5	50957443	50957444	rs79125854	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	5q11.2		rs79125854-?	NR	3E-11				NR [~ 8900000] (imputed)	N
973	chr5	50974049	50974050	rs28568568	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	5q11.2		rs28568568-?	NR	2E-8				NR [~ 8900000] (imputed)	N
973	chr5	50982153	50982154	rs4312833	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	5q11.2	ISL1	rs4312833-A	0.0889	4E-8		0.019415041	[0.012-0.026] unit decrease	Affymetrix [11514654] (imputed)	N
974	chr5	50990679	50990680	rs35872837	31085060	Gisbert L	2019-05-10	Eur Neuropsychopharmacol	Genome-wide analysis of emotional lability in adult attention deficit hyperactivity disorder (ADHD).	Emotional lability in attention deficit hyperactivity disorder	563 European ancestry individuals	NA	5q11.2	ISL1	rs35872837-?	NR	4E-6		2.0408163	[1.52-2.78]	Illumina [2777520] (imputed)	N
974	chr5	51071091	51071092	rs116658630	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	5q11.2		rs116658630-A	NR	3E-9		0.035	[0.023-0.047] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
974	chr5	51108644	51108645	rs4485884	33888516	Zheng T	2021-04-22	Gut	Genome-wide analysis of 944 133 individuals provides insights into the etiology of haemorrhoidal disease.	Haemorrhoidal disease	218,920 European ancestry cases, 725,213 European ancestry controls	NA	5q11.2	intergenic	rs4485884-?	0.4263	6E-9		1.02	[1.02-1.03]	Affymetrix, Illumina [8494288] (imputed)	N
975	chr5	51122212	51122213	rs185074265	33048379	Richard MA	2020-10-13	Cancer	Genetic variation in the body mass index of adult survivors of childhood acute lymphoblastic leukemia: A report from the Childhood Cancer Survivor Study and the St. Jude Lifetime Cohort.	BMI in adult survivors of childhood acute lymphoblastic leukemia	1,458 European ancestry individuals	787 individuals	5q11.2	NR	rs185074265-T	NR	4E-6		5.0	[2.84-7.16] unit increase	Illumina [> 9000000] (imputed)	N
975	chr5	51122988	51122989	rs60134806	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta minimum area	35,110 individuals	NA	5q11.2		rs60134806-T	0.624975	1E-9		0.0462004	[0.032-0.061] decrease	Affymetrix [NR]	N
975	chr5	51164114	51164115	rs12186641	23708191	Cordell HJ	2013-05-26	Nat Genet	Genome-wide association study of multiple congenital heart disease phenotypes identifies a susceptibility locus for atrial septal defect at chromosome 4p16.	Congenital heart disease	1,479 European ancestry congenital heart disease cases, 340 European ancestry ostium secundum atrial septal defect cases, 5,159 European ancestry controls	417 European ancestry ostium secundum atrial septal defect cases, 209 European ancestry ventricular septal defect cases, 2,520 European ancestry controls	5q11.2	NR	rs12186641-?	0.071	7E-6	(VSD)	1.676	[NR]	Illumina [514952]	N
975	chr5	51173323	51173324	rs17835853	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	5q11.2	NR	rs17835853-G	0.956794057690593	4E-6	(IGP30)	0.4778	[0.27-0.68] unit increase	Illumina [~ 2500000] (imputed)	N
975	chr5	51173323	51173324	rs17835853	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	5q11.2	NR	rs17835853-G	0.956751274008025	6E-6	(IGP34)	0.4694	[0.27-0.67] unit decrease	Illumina [~ 2500000] (imputed)	N
975	chr5	51196558	51196559	rs12655095	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta distensibility	29,684 individuals	NA	5q11.2		rs12655095-G	0.662537	4E-8		0.0410435	[0.026-0.056] increase	Affymetrix [NR]	N
975	chr5	51217850	51217851	rs10042348	20889312	Wang KS	2010-10-01	Schizophr Res	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	5q11.2	NR	rs10042348-?	NR	5E-6		1.2948	[NR]	Affymetrix [722112]	N
975	chr5	51236325	51236326	rs16879308	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine without aura	7,107 European ancestry cases, 69,427 European ancestry controls	NA	5q11.2	intergenic	rs16879308-?	0.94	2E-6		1.23	[1.14-1.35]	Affymetrix, Illumina [~ 2300000] (imputed)	N
975	chr5	51248273	51248274	rs141930488	32424353	Zhang H	2020-05-18	Nat Genet	Genome-wide association study identifies 32 novel breast cancer susceptibility loci from overall and subtype-specific analyses.	Breast cancer	133,384 European ancestry cases, 113,789 European ancestry controls	NA	5q11.2	NR	rs141930488-?	NR	4E-8				Illumina [~ 10800000] (imputed)	N
975	chr5	51248273	51248274	rs141930488	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	5q11.2	NR	rs141930488-A	0.0203	8E-6	(EA)	0.111	[0.062-0.16] unit increase	Illumina [~ 11800000] (imputed)	N
976	chr5	51333059	51333060	rs4571421	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Reading ability (multivariate)	up to 3,468 European ancestry individuals	NA	5q11.2	NR	rs4571421-?		2E-6				Illumina [up to 6969139] (imputed)	N
976	chr5	51333059	51333060	rs4571421	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Rapid automised naming of pictures	2,562 European ancestry individuals	NA	5q11.2	CTD-2203A3.1	rs4571421-C	0.342835714	3E-7		0.168193	[0.1-0.23] unit decrease	Illumina [6952813] (imputed)	N
976	chr5	51356354	51356355	rs77754964	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	5q11.2		rs77754964-?	NR	3E-11				NR [~ 8900000] (imputed)	N
976	chr5	51379005	51379006	rs116464256	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	5q11.2	NR	rs116464256-C	0.0318	4E-6	(EA)	0.0855	[0.049-0.122] unit increase	Illumina [~ 11800000] (imputed)	N
977	chr5	51405455	51405456	rs10434549	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	5q11.2	NR	rs10434549-?	NR	3E-8				Illumina [7760689] (imputed)	N
977	chr5	51458340	51458341	rs7447978	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,963 Sub-Saharan African ancestry females	NA	5q11.2		rs7447978-A	0.982608	3E-6		0.04729	[0.028-0.067] unit decrease	Illumina [13900000] (imputed)	N
977	chr5	51491063	51491064	rs4348174	25436638	Malinowski JR	2014-12-01	PLoS One	Genetic variants associated with serum thyroid stimulating hormone (TSH) levels in European Americans and African Americans from the eMERGE Network.	Serum thyroid-stimulating hormone levels	4,501 European ancestry individuals, 351 African American individuals	NA	5q11.2	ITGA1	rs4348174-C	0.4	4E-6	(EA)	0.05	[0.03-0.07] unit increase	Illumina [up to 905285]	N
978	chr5	51521296	51521297	rs13160295	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	5q11.2	NR	rs13160295-G	0.0239	4E-6	(EA)	0.1121	[0.064-0.16] unit increase	Illumina [~ 11800000] (imputed)	N
978	chr5	51534599	51534600	rs116445074	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Platelet-derived growth factor BB levels	8,293 Finnish ancestry individuals	NA	5q11.2	NR	rs116445074-G		3E-7		0.2931	[0.18-0.41] SD units decrease	NR [10700000] (imputed)	N
978	chr5	51560997	51560998	rs10072937	34620984	Skuladottir AT	2021-10-07	Commun Biol	A genome-wide meta-analysis uncovers six sequence variants conferring risk of vertigo.	Vertigo	48,072 European ancestry cases, 894,541 European ancestry controls	NA	5q11.2		rs10072937-A	NR	3E-7		1.07972		Affymetrix, Illumina [62056310] (imputed)	N
978	chr5	51635110	51635111	rs113209151	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Platelet-derived growth factor BB levels	8,293 Finnish ancestry individuals	NA	5q11.2	NR	rs113209151-C		1E-6		0.2861	[0.17-0.4] SD units increase	NR [10700000] (imputed)	N
979	chr5	51651396	51651397	rs13174042	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Back pain	22,413 European ancestry cases, 445,856 European ancestry controls, 1,732 East Asian ancestry cases, 176,994 East Asian ancestry controls	NA	5q11.2		rs13174042-C	NR	2E-8		0.0678	[0.044-0.092] unit increase	Affymetrix, Illumina [25841286] (imputed)	N
979	chr5	51664931	51664932	rs140086245	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q11.2	NR	rs140086245-A	0.0122	2E-8	(AGXT)	6.458	NR unit increase	Illumina [1671387] (imputed)	N
979	chr5	51674056	51674057	rs2897250	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Longevity	up to 482,000 European ancestry individuals	NA	5q11.2	NR	rs2897250-G	NR	9E-6		0.009228	[0.0052-0.0133] unit increase	Illumina [~ 540852]	N
979	chr5	51693978	51693979	rs144727871	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	5q11.2	NR	rs144727871-A	0.0318	4E-6	(EA)	0.0842	[0.049-0.12] unit increase	Illumina [~ 11800000] (imputed)	N
979	chr5	51706905	51706906	rs6889746	23509613	Kamboh MI	2013-02-24	Autoimmune Dis	Genome-wide association study of antiphospholipid antibodies.	Presence of antiphospholipid antibodies	183 European ancestry ACL-positive cases, 487 European ancestry ACL-negative controls, 127 European ancestry LAC-positive cases, 581 European ancestry LAC-negative controls, 136 European ancestry Anti-B2GPI-positive cases, 360 European ancestry Anti-B2GPI-negative controls	NA	5q11.2	PELO	rs6889746-?	.3534	6E-6	(ACL)	1.776	[NR]	Affymetrix [906600]	N
979	chr5	51716956	51716957	rs13169187	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	5q11.2	Intergenic	rs13169187-A	0.5394	3E-9	(MTAG)	0.0098	[0.0065-0.0131] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
979	chr5	51716956	51716957	rs13169187	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	5q11.2		rs13169187-A	0.5374	2E-8		0.0079	[0.0052-0.0106] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
979	chr5	51716956	51716957	rs13169187	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	5q11.2	Intergenic	rs13169187-A	0.5374	3E-10	(MTAG)	0.0082	[0.0057-0.0107] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
979	chr5	51751573	51751574	rs12109081	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	5q11.2	ITGA1	rs12109081-T	0.361	1E-8		1.04	[1.03-1.06]	Affymetrix, Illumina [11800000] (imputed)	N
979	chr5	51763664	51763665	rs12187734	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	5q11.2	NR	rs12187734-C	0.5234	2E-10		0.0293	[0.02-0.038] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
979	chr5	51763664	51763665	rs12187734	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	5q11.2	NR	rs12187734-C	0.5665	2E-13		0.0287	[0.021-0.036] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
980	chr5	51791224	51791225	rs17261179	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	5q11.2	ITGA1	rs17261179-T	0.5172	1E-8		1.04	[1.02-1.05]	Affymetrix, Illumina [~ 27000000] (imputed)	N
980	chr5	51805741	51805742	rs7702276	23419831	Ramanan VK	2013-02-19	Mol Psychiatry	APOE and BCHE as modulators of cerebral amyloid deposition: a florbetapir PET genome-wide association study.	Alzheimer's disease biomarkers	555 European ancestry individuals	NA	5q11.2	ITGA1	rs7702276-T	0.36	1E-6	(Cortical Ab)			Illumina [6108668] (imputed)	N
980	chr5	51819678	51819679	rs4865733	32546850	Campos AI	2020-06-16	Sci Rep	Genetic aetiology of self-harm ideation and behaviour.	Self-harm ideation	23,192 European ancestry cases, 133,524 European ancestry controls	NA	5q11.2	NR	rs4865733-T	NR	2E-8		0.008	NR unit decrease	Affymetrix [NR] (imputed)	N
980	chr5	51875341	51875342	rs10155661	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	5q11.2	NR	rs10155661-A	NR	3E-6	(female)	0.1085	[0.063-0.154] unit increase	Illumina [11133794] (imputed)	N
980	chr5	51900742	51900743	rs830910	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	5q11.2	NR	rs830910-A	0.823	3E-9		0.00837705	[0.0056-0.0111] unit decrease	NR [9732723] (imputed)	N
981	chr5	51948395	51948395	rs5867818	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	5q11.2		rs5867818-?	NR	6E-17		0.0208375	[0.016-0.026] unit increase	Affymetrix [20259828] (imputed)	N
981	chr5	51967877	51967878	rs10059225	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	5q11.2	PELO	rs10059225-C	0.774208	1E-11		0.0149972	[0.011-0.019] unit increase	NR [13737936] (imputed)	N
981	chr5	51967877	51967878	rs10059225	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	5q11.2		rs10059225-?	NR	7E-13				NR [~ 8900000] (imputed)	N
981	chr5	51993399	51993400	rs164607	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	5q11.2		rs164607-A	NR	5E-8		0.0199	[0.013-0.027] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
981	chr5	52000023	52000024	rs1812128	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	154,355 East Asian ancestry individuals	NA	5q11.2		rs1812128-T	0.688585	5E-8		0.0199494	[0.013-0.027] unit increase	Illumina [13479091] (imputed)	N
981	chr5	52000061	52000063	rs143951742	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	5q11.2	CTD-2288O8.1	rs143951742-C	0.111698	8E-12		0.024515161	[0.017-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
981	chr5	52000061	52000063	rs143951742	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	5q11.2	CTD-2288O8.1	rs143951742-C	0.111686	2E-12		0.025342226	[0.018-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
981	chr5	52000061	52000063	rs143951742	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	5q11.2	CTD-2288O8.1	rs143951742-C	0.111708	1E-15		0.028505608	[0.022-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
981	chr5	52000061	52000063	rs143951742	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	5q11.2	CTD-2288O8.1	rs143951742-C	0.111699	7E-16		0.0287626	[0.022-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
981	chr5	52003396	52003397	rs351930	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	5q11.2	PELO	rs351930-T	0.80114	3E-9		0.019187	[0.013-0.026] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
981	chr5	52020395	52020396	rs830884	22020760	Won HH	2011-10-21	Cancer	Polymorphic markers associated with severe oxaliplatin-induced, chronic peripheral neuropathy in colon cancer patients.	Response to platinum-based agents	96 colon cancer cases	247 colon cancer cases	5q11.2	ITGA1, PELO	rs830884-?	NR	2E-6		3.13	[1.85-5.26]	Affymetrix [656843]	N
981	chr5	52022712	52022713	rs830886	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Pars orbitalis volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	5q11.2	NR	rs830886-?		9E-6				Illumina [4322238] (imputed)	N
982	chr5	52058672	52058673	rs4530726	33290408	Ray D	2020-12-08	PLoS Genet	A powerful method for pleiotropic analysis under composite null hypothesis identifies novel shared loci between Type 2 Diabetes and Prostate Cancer.	Type 2 diabetes or prostate cancer (pleiotropy)	62,892 European ancestry T2D cases, 79,194 European ancestry PrCa cases, 659,536 European ancestry controls	NA	5q11.2	ITGA1	rs4530726-?		4E-8				Illumina [5041948] (imputed)	N
982	chr5	52064348	52064349	rs10072364	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (multi-trait analysis)	90,939 European ancestry individuals	NA	5q11.2	ISL1, PELO	rs10072364-T	0.47	2E-9		0.0051	NR unit decrease	Affymetrix, Illumina [8002429] (imputed)	N
982	chr5	52064348	52064349	rs10072364	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (adjusted for vertical disc diameter)	67,040 British ancestry individuals	NA	5q11.2	ISL1, PELO	rs10072364-T	0.47	4E-6		0.0039	NR unit decrease	Affymetrix [at least 8002429] (imputed)	N
982	chr5	52072193	52072194	rs2648731	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	5q11.2		rs2648731-A	0.303289993	7E-12		0.0684739	[0.049-0.088] unit increase	Illumina [13429769] (imputed)	N
982	chr5	52072193	52072194	rs2648731	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	5q11.2		rs2648731-A	NR	3E-19		0.0647	[0.051-0.079] unit increase	Affymetrix, Illumina [25845091] (imputed)	N
982	chr5	52072193	52072194	rs2648731	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	5q11.2		rs2648731-A	NR	3E-9		0.0504	[0.034-0.067] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
982	chr5	52072193	52072194	rs2648731	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	5q11.2		rs2648731-A	NR	2E-11		0.0165	[0.012-0.021] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
982	chr5	52072543	52072544	rs2548499	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	5q11.2	CTD-2288O8.1	rs2548499-G	0.207952	9E-14		0.020318732	[0.015-0.026] unit increase	Affymetrix [93095623] (imputed)	N
982	chr5	52072644	52072645	rs2548498	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	46,511 Asian ancestry cases, 169,776 Asian ancestry controls	NA	5q11.2	NR	rs2548498-T	0.8336	2E-8		0.0663	[0.043-0.089] unit decrease	Affymetrix, Illumina [1077427] (imputed)	N
982	chr5	52073843	52073844	rs2548496	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	5q11.2	NR	rs2548496-G	0.208159	3E-16		0.018994	[0.014-0.024] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
982	chr5	52075450	52075451	rs138367557	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	5q11.2		rs138367557-T	0.963702	2E-8		0.0575191	[0.038-0.078] unit decrease	NR [11722792] (imputed)	N
982	chr5	52079001	52079002	rs13189973	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q11.2	NR	rs13189973-C	0.768405	2E-16				Affymetrix, Illumina [23472807] (imputed)	N
982	chr5	52080455	52080458	rs539212981	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	5q11.2	CTD-2288O8.1	rs539212981-T	0.826583	1E-11		0.019962516	[0.014-0.026] unit increase	Affymetrix [93095623] (imputed)	N
982	chr5	52080455	52080458	rs539212981	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	5q11.2	CTD-2288O8.1	rs539212981-T	0.826567	6E-13		0.021130038	[0.015-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
982	chr5	52080908	52080909	rs77704739	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	5q11.2		rs77704739-C	NR	1E-17		0.0511	[0.039-0.063] unit decrease	Affymetrix, Illumina [20529698] (imputed)	N
982	chr5	52080908	52080909	rs77704739	33893285	Guindo-Martinez M	2021-04-23	Nat Commun	The impact of non-additive genetic associations on age-related complex diseases.	Type 2 diabetes	6,967 European ancestry cases, 49,670 European ancestry controls	NA	5q11.2		rs77704739-C	0.0363988	2E-8		4.32		Affymetrix [11417486] (imputed)	N
982	chr5	52080908	52080909	rs77704739	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	5q11.2	NR	rs77704739-C	NR	3E-14		0.0456	[0.034-0.057] unit decrease	Affymetrix [9000000] (imputed)	N
982	chr5	52080908	52080909	rs77704739	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	5q11.2	NR	rs77704739-C	NR	4E-13		0.0434	[0.032-0.055] unit decrease	Affymetrix [9000000] (imputed)	N
982	chr5	52080908	52080909	rs77704739	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	5q11.2	NR	rs77704739-C	NR	6E-11		0.0409	[0.029-0.053] unit decrease	Affymetrix [9000000] (imputed)	N
982	chr5	52080908	52080909	rs77704739	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	5q11.2	NR	rs77704739-C	NR	3E-23		0.0596	[0.048-0.071] unit decrease	Affymetrix [9000000] (imputed)	N
982	chr5	52080908	52080909	rs77704739	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	5q11.2	NR	rs77704739-C	NR	2E-10		0.0379	[0.026-0.05] unit decrease	Affymetrix [9000000] (imputed)	N
982	chr5	52080908	52080909	rs77704739	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	5q11.2	NR	rs77704739-C	NR	7E-19		0.0532	[0.041-0.065] unit decrease	Affymetrix [9000000] (imputed)	N
982	chr5	52080908	52080909	rs77704739	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	5q11.2	NR	rs77704739-C	NR	3E-36		0.0755	[0.064-0.087] unit decrease	Affymetrix [9000000] (imputed)	N
982	chr5	52080908	52080909	rs77704739	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	5q11.2	CTD-2288O8.1	rs77704739-C	0.042028	4E-14		0.042581413	[0.032-0.054] unit decrease	Affymetrix [93095623] (imputed)	N
982	chr5	52080908	52080909	rs77704739	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	5q11.2	NR	rs77704739-T	0.957577	1E-21		0.0476549	[0.038-0.057] unit increase	NR [NR]	N
982	chr5	52083225	52083226	rs115421711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	5q11.2		rs115421711-A	0.958702	5E-11		0.0659555	[0.046-0.086] unit decrease	NR [11722792] (imputed)	N
982	chr5	52083225	52083226	rs115421711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	5q11.2		rs115421711-A	0.958702	2E-13		0.0766476	[0.056-0.097] unit increase	NR [11722792] (imputed)	N
982	chr5	52083225	52083226	rs115421711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large LDL	115,082 European ancestry individuals	NA	5q11.2		rs115421711-A	0.958702	1E-10		0.065747	[0.046-0.086] unit increase	NR [11722792] (imputed)	N
982	chr5	52083225	52083226	rs115421711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	5q11.2		rs115421711-A	0.958701	3E-8		0.0573771	[0.037-0.078] unit increase	NR [11722792] (imputed)	N
982	chr5	52083225	52083226	rs115421711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small HDL	115,082 European ancestry individuals	NA	5q11.2		rs115421711-A	0.958702	1E-8		0.0596166	[0.039-0.08] unit increase	NR [11722792] (imputed)	N
982	chr5	52083225	52083226	rs115421711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large LDL	115,082 European ancestry individuals	NA	5q11.2		rs115421711-A	0.958702	1E-10		0.0665577	[0.046-0.087] unit increase	NR [11722792] (imputed)	N
982	chr5	52083225	52083226	rs115421711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	5q11.2		rs115421711-A	0.958701	2E-10		0.0629816	[0.044-0.082] unit increase	NR [11722792] (imputed)	N
982	chr5	52083225	52083226	rs115421711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small HDL	115,082 European ancestry individuals	NA	5q11.2		rs115421711-A	0.958702	2E-8		0.0584762	[0.038-0.079] unit increase	NR [11722792] (imputed)	N
982	chr5	52083225	52083226	rs115421711	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	5q11.2	NR	rs115421711-A	0.959036	2E-29		0.0544016	[0.045-0.064] unit increase	Affymetrix [15000001]	N
982	chr5	52083225	52083226	rs115421711	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	5q11.2	CTD-2288O8.1	rs115421711-G	0.0412	1E-81		0.1729777	[0.16-0.19] unit increase	Affymetrix [~ 2500000] (imputed)	N
982	chr5	52083225	52083226	rs115421711	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	5q11.2	CTD-2288O8.1	rs115421711-G	0.0412	6E-79		0.1700258	[0.15-0.19] unit increase	Affymetrix [~ 2500000] (imputed)	N
982	chr5	52083225	52083226	rs115421711	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	5q11.2	CTD-2288O8.1	rs115421711-G	0.0412	2E-70		0.1585644	[0.14-0.18] unit increase	Affymetrix [~ 2500000] (imputed)	N
982	chr5	52083225	52083226	rs115421711	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	5q11.2	CTD-2288O8.1	rs115421711-G	0.0412	9E-100		0.1913161	[0.17-0.21] unit increase	Affymetrix [~ 2500000] (imputed)	N
982	chr5	52087584	52087584	rs3078994	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	5q11.2		rs3078994-TCA	0.690834124	8E-9		0.061278492	[0.04-0.082] unit decrease	Illumina [13134967] (imputed)	N
982	chr5	52087851	52087852	rs6879147	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	5q11.2		rs6879147-G	0.836053325	2E-10		0.93223417	[0.912252684-0.952653359]	Illumina [8919992] (imputed)	N
982	chr5	52087851	52087852	rs6879147	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum total protein level	113,509 Japanese ancestry individuals	NA	5q11.2	ITGA1, PELO	rs6879147-?	NR	3E-9		0.03335	[0.022-0.044] unit increase novel	Illumina [6108953] (imputed)	N
982	chr5	52088270	52088271	rs115018790	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small LDL	115,082 European ancestry individuals	NA	5q11.2		rs115018790-G	0.958771	1E-14		0.0804559	[0.06-0.101] unit increase	NR [11722792] (imputed)	N
982	chr5	52088270	52088271	rs115018790	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in LDL	115,082 European ancestry individuals	NA	5q11.2		rs115018790-G	0.958771	6E-12		0.0709669	[0.051-0.091] unit increase	NR [11722792] (imputed)	N
982	chr5	52088270	52088271	rs115018790	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	5q11.2		rs115018790-G	0.958771	4E-8		0.0553571	[0.036-0.075] unit increase	NR [11722792] (imputed)	N
982	chr5	52088270	52088271	rs115018790	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	5q11.2	ITGA1, PELO	rs115018790-A	0.0411319999999999	2E-191		0.16731413	[0.16-0.18] unit increase	Affymetrix [93095623] (imputed)	N
982	chr5	52092930	52092931	rs7708122	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	5q11.2	NR	rs7708122-?	NR	8E-6		0.6445	[0.37-0.92] unit decrease	Illumina [at least 560000] (imputed)	N
982	chr5	52094244	52094244	rs11410487	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	5q11.2	ITGA1	rs11410487-A	0.17	2E-8		1.07	1.04-1.09	Illumina [12557761] (imputed)	N
982	chr5	52095023	52095024	rs116734477	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	5q11.2		rs116734477-C	0.958805	9E-9		0.0590621	[0.039-0.079] unit increase	NR [11722792] (imputed)	N
982	chr5	52095023	52095024	rs116734477	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large LDL	115,082 European ancestry individuals	NA	5q11.2		rs116734477-C	0.958805	8E-11		0.0669917	[0.047-0.087] unit increase	NR [11722792] (imputed)	N
982	chr5	52095023	52095024	rs116734477	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	5q11.2		rs116734477-T	NR	1E-11		0.0396	[0.028-0.051] unit decrease	Affymetrix, Illumina [20536134] (imputed)	N
982	chr5	52095023	52095024	rs116734477	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	5q11.2		rs116734477-T	NR	4E-18		0.0514	[0.04-0.063] unit decrease	Affymetrix, Illumina [20521447] (imputed)	N
982	chr5	52095023	52095024	rs116734477	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	5q11.2	ITGA1, PELO	rs116734477-T	0.041103	1E-187		0.16577712	[0.15-0.18] unit increase	Affymetrix [93095623] (imputed)	N
982	chr5	52095023	52095024	rs116734477	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	5q11.2	ITGA1, PELO	rs116734477-T	0.0411	2E-193		0.1687924	[0.16-0.18] unit increase	Affymetrix [93095623] (imputed)	N
982	chr5	52095023	52095024	rs116734477	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	5q11.2	ITGA1, PELO	rs116734477-T	0.041107	2E-266		0.19661127	[0.19-0.21] unit increase	Affymetrix [93095623] (imputed)	N
982	chr5	52095023	52095024	rs116734477	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	5q11.2	ITGA1, PELO	rs116734477-T	0.041103	1E-265		0.19638701	[0.19-0.21] unit increase	Affymetrix [93095623] (imputed)	N
982	chr5	52095023	52095024	rs116734477	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	5q11.2	ITGA1	rs116734477-C	0.959164	3E-19		0.0474419	[0.037-0.058] unit increase	Affymetrix [NR] (imputed)	N
982	chr5	52095023	52095024	rs116734477	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	5q11.2	ITGA1	rs116734477-C	0.959187	2E-33		0.0634849	[0.053-0.074] unit increase	Affymetrix [NR] (imputed)	N
982	chr5	52095023	52095024	rs116734477	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	5q11.2	ITGA1, PELO	rs116734477-?	NR	1E-20		0.0598	[0.048-0.071] unit decrease	Affymetrix [5701386] (imputed)	N
982	chr5	52095942	52095943	rs114309882	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	5q11.2	PELO	rs114309882-A	0.022405	2E-87		0.14937678	[0.13-0.16] unit increase	Affymetrix [93095623] (imputed)	N
982	chr5	52095942	52095943	rs114309882	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	5q11.2	PELO	rs114309882-A	0.022403	9E-86		0.14809717	[0.13-0.16] unit increase	Affymetrix [93095623] (imputed)	N
982	chr5	52095942	52095943	rs114309882	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	5q11.2	PELO	rs114309882-A	0.02241	3E-91		0.15323345	[0.14-0.17] unit increase	Affymetrix [93095623] (imputed)	N
982	chr5	52095942	52095943	rs114309882	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	5q11.2	PELO	rs114309882-A	0.022435	1E-122		0.17653441	[0.16-0.19] unit increase	Affymetrix [93095623] (imputed)	N
982	chr5	52095942	52095943	rs114309882	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	5q11.2	PELO	rs114309882-A	0.022435	3E-122		0.17626561	[0.16-0.19] unit increase	Affymetrix [93095623] (imputed)	N
982	chr5	52096888	52096889	rs1499280	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	5q11.2	PELO	rs1499280-A	0.9185847	4E-91		0.08334309	[0.075-0.091] unit decrease	Affymetrix [93095623] (imputed)	N
982	chr5	52096888	52096889	rs1499280	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	5q11.2	PELO	rs1499280-A	0.9185896	1E-86		0.08122997	[0.073-0.089] unit decrease	Affymetrix [93095623] (imputed)	N
982	chr5	52096888	52096889	rs1499280	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	5q11.2	PELO	rs1499280-A	0.9186007	2E-78		0.07755847	[0.069-0.086] unit decrease	Affymetrix [93095623] (imputed)	N
982	chr5	52096888	52096889	rs1499280	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	5q11.2	PELO	rs1499280-A	0.918589	6E-119		0.0948979	[0.087-0.103] unit decrease	Affymetrix [93095623] (imputed)	N
982	chr5	52096888	52096889	rs1499280	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	5q11.2	PELO	rs1499280-A	0.9185918	2E-116		0.09391708	[0.086-0.102] unit decrease	Affymetrix [93095623] (imputed)	N
982	chr5	52096888	52096889	rs1499280	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	5q11.2	PELO	rs1499280-A	0.9186	5E-33		0.07831162	[0.065-0.091] unit decrease	Affymetrix [~ 2500000] (imputed)	N
982	chr5	52096888	52096889	rs1499280	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	5q11.2	PELO	rs1499280-A	0.9186	1E-31		0.07665564	[0.064-0.089] unit decrease	Affymetrix [~ 2500000] (imputed)	N
982	chr5	52096888	52096889	rs1499280	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	5q11.2	PELO	rs1499280-A	0.9186	6E-20		0.05919002	[0.047-0.072] unit decrease	Affymetrix [~ 2500000] (imputed)	N
982	chr5	52096888	52096889	rs1499280	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	5q11.2	PELO	rs1499280-A	0.9186	2E-34		0.07983775	[0.067-0.093] unit decrease	Affymetrix [~ 2500000] (imputed)	N
982	chr5	52096888	52096889	rs1499280	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	5q11.2	PELO	rs1499280-A	0.9186	1E-33		0.07906187	[0.066-0.092] unit decrease	Affymetrix [~ 2500000] (imputed)	N
982	chr5	52097258	52097259	rs202151315	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	High light scatter reticulocyte count	437,723 European ancestry individuals	NA	5q11.2		rs202151315-?	NR	5E-9		0.553284	[0.36-0.74] unit increase	NR [9800000] (imputed)	N
982	chr5	52100488	52100489	rs3811978	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	5q11.2	ITGA1	rs3811978-G	0.1668	8E-11		1.06	[1.04-1.07]	Affymetrix, Illumina [~ 27000000] (imputed)	N
982	chr5	52100638	52100639	rs7735266	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	5q11.2		rs7735266-C	NR	1E-8		0.0353	[0.023-0.047] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
982	chr5	52105306	52105307	rs7719930	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	5q11.2		rs7719930-C	NR	1E-15		0.0273	[0.021-0.034] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
982	chr5	52106277	52106278	rs1499279	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small LDL	115,082 European ancestry individuals	NA	5q11.2		rs1499279-T	0.958377	1E-10		0.0668698	[0.047-0.087] unit increase	NR [11722792] (imputed)	N
982	chr5	52106277	52106278	rs1499279	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium LDL	115,082 European ancestry individuals	NA	5q11.2		rs1499279-T	0.958377	5E-11		0.0683986	[0.048-0.089] unit increase	NR [11722792] (imputed)	N
982	chr5	52106277	52106278	rs1499279	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large LDL	115,082 European ancestry individuals	NA	5q11.2		rs1499279-T	0.958377	5E-11		0.0677024	[0.048-0.088] unit increase	NR [11722792] (imputed)	N
982	chr5	52106277	52106278	rs1499279	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in LDL	115,082 European ancestry individuals	NA	5q11.2		rs1499279-T	0.958377	3E-11		0.068823	[0.049-0.089] unit increase	NR [11722792] (imputed)	N
982	chr5	52106277	52106278	rs1499279	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in IDL	115,082 European ancestry individuals	NA	5q11.2		rs1499279-T	0.958377	7E-9		0.058007	[0.038-0.078] unit increase	NR [11722792] (imputed)	N
982	chr5	52106277	52106278	rs1499279	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol minus HDL-C levels	115,082 European ancestry individuals	NA	5q11.2		rs1499279-T	0.958377	4E-9		0.0609557	[0.041-0.081] unit increase	NR [11722792] (imputed)	N
982	chr5	52106277	52106278	rs1499279	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small LDL	115,082 European ancestry individuals	NA	5q11.2		rs1499279-T	0.958377	7E-13		0.0742237	[0.054-0.095] unit increase	NR [11722792] (imputed)	N
982	chr5	52106277	52106278	rs1499279	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium LDL	115,082 European ancestry individuals	NA	5q11.2		rs1499279-T	0.958377	2E-12		0.0735208	[0.053-0.094] unit increase	NR [11722792] (imputed)	N
982	chr5	52106277	52106278	rs1499279	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large LDL	115,082 European ancestry individuals	NA	5q11.2		rs1499279-T	0.958377	6E-12		0.0708201	[0.051-0.091] unit increase	NR [11722792] (imputed)	N
982	chr5	52106277	52106278	rs1499279	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in LDL	115,082 European ancestry individuals	NA	5q11.2		rs1499279-T	0.958377	1E-12		0.0734172	[0.053-0.094] unit increase	NR [11722792] (imputed)	N
982	chr5	52106277	52106278	rs1499279	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in IDL	115,082 European ancestry individuals	NA	5q11.2		rs1499279-T	0.958377	3E-8		0.0553027	[0.036-0.075] unit increase	NR [11722792] (imputed)	N
982	chr5	52106277	52106278	rs1499279	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	LDL cholesterol levels	115,082 European ancestry individuals	NA	5q11.2		rs1499279-T	0.958377	5E-11		0.068024	[0.048-0.088] unit increase	NR [11722792] (imputed)	N
982	chr5	52106277	52106278	rs1499279	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	5q11.2		rs1499279-T	0.958377	3E-8		0.0573084	[0.037-0.078] unit increase	NR [11722792] (imputed)	N
982	chr5	52106277	52106278	rs1499279	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in IDL	115,082 European ancestry individuals	NA	5q11.2		rs1499279-T	0.958377	7E-9		0.0582177	[0.039-0.078] unit increase	NR [11722792] (imputed)	N
982	chr5	52106277	52106278	rs1499279	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large LDL particles	115,082 European ancestry individuals	NA	5q11.2		rs1499279-T	0.958377	2E-9		0.0625401	[0.042-0.083] unit increase	NR [11722792] (imputed)	N
982	chr5	52106277	52106278	rs1499279	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of LDL particles	115,082 European ancestry individuals	NA	5q11.2		rs1499279-T	0.958377	6E-9		0.0604562	[0.04-0.081] unit increase	NR [11722792] (imputed)	N
982	chr5	52106277	52106278	rs1499279	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of IDL particles	115,082 European ancestry individuals	NA	5q11.2		rs1499279-T	0.958377	1E-9		0.062436	[0.042-0.083] unit increase	NR [11722792] (imputed)	N
982	chr5	52106277	52106278	rs1499279	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Clinical LDL cholesterol levels	115,082 European ancestry individuals	NA	5q11.2		rs1499279-T	0.958377	1E-11		0.0702165	[0.05-0.09] unit increase	NR [11722792] (imputed)	N
982	chr5	52106277	52106278	rs1499279	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small LDL	115,082 European ancestry individuals	NA	5q11.2		rs1499279-T	0.958377	1E-8		0.0590431	[0.039-0.079] unit increase	NR [11722792] (imputed)	N
982	chr5	52106277	52106278	rs1499279	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium VLDL	115,082 European ancestry individuals	NA	5q11.2		rs1499279-T	0.958377	9E-9		0.0592177	[0.039-0.079] unit increase	NR [11722792] (imputed)	N
982	chr5	52106277	52106278	rs1499279	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium LDL	115,082 European ancestry individuals	NA	5q11.2		rs1499279-T	0.958377	1E-9		0.0633792	[0.043-0.084] unit increase	NR [11722792] (imputed)	N
982	chr5	52106277	52106278	rs1499279	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in LDL	115,082 European ancestry individuals	NA	5q11.2		rs1499279-T	0.958377	2E-10		0.0660717	[0.046-0.086] unit increase	NR [11722792] (imputed)	N
982	chr5	52106277	52106278	rs1499279	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in IDL	115,082 European ancestry individuals	NA	5q11.2		rs1499279-T	0.958377	9E-9		0.0576939	[0.038-0.077] unit increase	NR [11722792] (imputed)	N
982	chr5	52106277	52106278	rs1499279	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small LDL	115,082 European ancestry individuals	NA	5q11.2		rs1499279-T	0.958377	1E-10		0.0668125	[0.046-0.087] unit increase	NR [11722792] (imputed)	N
982	chr5	52106277	52106278	rs1499279	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	5q11.2		rs1499279-T	0.958377	6E-11		0.0680304	[0.048-0.088] unit increase	NR [11722792] (imputed)	N
982	chr5	52106277	52106278	rs1499279	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in IDL	115,082 European ancestry individuals	NA	5q11.2		rs1499279-T	0.958377	6E-9		0.0581984	[0.039-0.078] unit increase	NR [11722792] (imputed)	N
982	chr5	52106277	52106278	rs1499279	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein B levels	115,082 European ancestry individuals	NA	5q11.2		rs1499279-T	0.958377	8E-9		0.0596608	[0.039-0.08] unit increase	NR [11722792] (imputed)	N
982	chr5	52106277	52106278	rs1499279	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	5q11.2		rs1499279-G	NR	3E-14		0.0445	[0.033-0.056] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
982	chr5	52106277	52106278	rs1499279	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	5q11.2	PELO	rs1499279-T	0.958844	3E-21		0.00526459	[0.0041-0.0064] unit increase	Affymetrix [13995440] (imputed)	N
982	chr5	52116747	52116748	rs56410424	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	5q11.2	ITGA1	rs56410424-T	0.128449	2E-11		0.022722019	[0.016-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
982	chr5	52120245	52120246	rs2456224	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	133,321 East Asian ancestry individuals	NA	5q11.2		rs2456224-C	0.836987	8E-10		0.0318048	[0.022-0.042] unit increase	Illumina [13477433] (imputed)	N
982	chr5	52133265	52133266	rs2432144	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5q11.2	ITGA1	rs2432144-?	NR	6E-6	(alanine)	0.24516481	[0.14-0.35] unit increase	Affymetrix [at least 2500000] (imputed)	N
982	chr5	52135542	52135543	rs6867399	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	5q11.2	ITGA1	rs6867399-A	0.2604	2E-11		0.1399	[0.099-0.181] unit increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
982	chr5	52156780	52156781	rs73754057	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	5q11.2	ITGA1	rs73754057-A	0.2599	4E-9		0.1284	[0.085-0.171] mmHg increase	Affymetrix [NR] (imputed)	N
983	chr5	52166731	52166732	rs2456220	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	5q11.2	NR	rs2456220-A	NR	7E-10		0.0147	[0.01-0.0194] unit increase	Affymetrix [9000000] (imputed)	N
983	chr5	52166991	52166992	rs73106321	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q11.2	NR	rs73106321-A	0.01568	9E-9	(A2M)	1.428	NR unit increase	Illumina [1671387] (imputed)	N
983	chr5	52179789	52179790	rs2456203	23284291	Hancock DB	2012-12-20	PLoS Genet	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (smoking interaction)	50,047 European ancestry individuals	NA	5q11.2	ITGA1	rs2456203-T	NR	2E-7	(FEV1/FVC, Pack-years)			NR [~ 2500000] (imputed)	N
983	chr5	52184267	52184268	rs4865540	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	5q11.2	NR	rs4865540-C	0.842541	1E-10		0.0175623	[0.012-0.023] unit decrease	NR [NR]	N
983	chr5	52185694	52185695	rs16880442	26708285	Wakil SM	2016-02-01	Atherosclerosis	A genome-wide association study reveals susceptibility loci for myocardial infarction/coronary artery disease in Saudi Arabs.	Myocardial infarction	2,563 Saudi Arab ancestry cases, 1,868 Saudi Arab ancestry controls	866 Saudi Arab ancestry cases, 371 Saudi Arab ancestry controls	5q11.2	ITGA1	rs16880442-G	0.93	2E-8		1.4084507	[NR]	Affymetrix [537798]	N
983	chr5	52185694	52185695	rs16880442	26708285	Wakil SM	2016-02-01	Atherosclerosis	A genome-wide association study reveals susceptibility loci for myocardial infarction/coronary artery disease in Saudi Arabs.	Coronary artery disease	2,165 Saudi Arab ancestry cases, 2,266 Saudi Arab ancestry controls	503 Saudi Arab ancestry cases, 734 Saudi Arab ancestry controls	5q11.2	ITGA1	rs16880442-G	0.93	6E-7		1.3888888	[NR]	Affymetrix [537798]	N
983	chr5	52187037	52187038	rs12522114	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	5q11.2	ITGA1	rs12522114-A	0.265	4E-14		0.0216	[0.016-0.027] unit decrease	Affymetrix [19819130] (imputed)	N
983	chr5	52187037	52187038	rs12522114	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	5q11.2	ITGA1	rs12522114-A	0.265	1E-41		0.0367	[0.031-0.042] unit decrease	Affymetrix [19819130] (imputed)	N
983	chr5	52187037	52187038	rs12522114	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	5q11.2	ITGA1	rs12522114-A	0.265	7E-9		0.0154	[0.01-0.021] unit decrease	Affymetrix [19819130] (imputed)	N
983	chr5	52187037	52187038	rs12522114	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	5q11.2		rs12522114-?	NR	8E-59				NR [~ 8900000] (imputed)	N
983	chr5	52193124	52193125	rs4074793	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	5q11.2		rs4074793-G	NR	7E-76		0.0658	[0.059-0.073] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
983	chr5	52193124	52193125	rs4074793	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	5q11.2		rs4074793-G	NR	2E-12		0.0251	[0.018-0.032] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
983	chr5	52193124	52193125	rs4074793	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	5q11.2	ITGA1	rs4074793-A	0.924727	2E-92		0.0193879	[0.017-0.021] unit decrease	Affymetrix [13995440] (imputed)	N
983	chr5	52193124	52193125	rs4074793	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	5q11.2	ITGA1	rs4074793-A	0.92472	2E-14		0.00550211	[0.0041-0.0069] unit decrease	Affymetrix [13995440] (imputed)	N
983	chr5	52193124	52193125	rs4074793	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	5q11.2	ITGA1	rs4074793-G	0.075	6E-11		6.56	z-score increase	Affymetrix [4311822] (imputed)	N
983	chr5	52193124	52193125	rs4074793	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	5q11.2	ITGA1	rs4074793-G	0.075	3E-13		7.3	z-score increase	Affymetrix [4312306] (imputed)	N
983	chr5	52193124	52193125	rs4074793	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Gamma glutamyl transferase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	5q11.2	ITGA1	rs4074793-?		5E-22		0.0727	[0.058-0.087] unit increase	Illumina [31500000] (imputed)	N
983	chr5	52193124	52193125	rs4074793	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	5q11.2	ITGA1	rs4074793-A	0.92478	2E-15		0.028042	[0.021-0.035] unit decrease	NR [13737936] (imputed)	N
983	chr5	52193124	52193125	rs4074793	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	5q11.2		rs4074793-?	NR	6E-17				NR [~ 8900000] (imputed)	N
983	chr5	52193124	52193125	rs4074793	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	5q11.2		rs4074793-?	NR	4E-17		0.032639	[0.025-0.04] unit decrease	Affymetrix [20259828] (imputed)	N
983	chr5	52193124	52193125	rs4074793	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Gamma glutamyl transferase levels	118,309 Japanese ancestry individuals	NA	5q11.2	ITGA1	rs4074793-?	NR	2E-16		0.06467	[0.049-0.08] unit increase novel	Illumina [6108953] (imputed)	N
983	chr5	52193124	52193125	rs4074793	22001757	Chambers JC	2011-10-16	Nat Genet	Genome-wide association study identifies loci influencing concentrations of liver enzymes in plasma.	Liver enzyme levels (gamma-glutamyl transferase)	Up to 52,350 European ancestry individuals, up to 8,739 Indian Asian ancestry individuals	NA	5q11.2	ITGA1	rs4074793-G	0.07	3E-10		5.5	[3.30-7.70] % increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
983	chr5	52193236	52193237	rs870992	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	133,471 East Asian ancestry individuals	NA	5q11.2		rs870992-G	0.073012	3E-16		0.054622	[0.042-0.068] unit increase	Illumina [13476165] (imputed)	N
983	chr5	52193236	52193237	rs870992	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	5q11.2	ITGA1	rs870992-A	0.9149	2E-10		0.0251	[0.017-0.033] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
983	chr5	52193236	52193237	rs870992	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	5q11.2	ITGA1	rs870992-A	0.9149	5E-11		0.0266	[0.019-0.034] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
983	chr5	52193236	52193237	rs870992	29926116	Grarup N	2018-06-20	Diabetologia	Identification of novel high-impact recessively inherited type 2 diabetes risk variants in the Greenlandic population.	Type 2 diabetes	317 Greenlandic ancestry cases, 2,631 Greenlandic ancestry controls	NA	5q11.2	ITGA1	rs870992-G	0.23	2E-8		2.79		Illumina [115182]	N
983	chr5	52193441	52193442	rs77853563	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	5q11.2	ITGA1	rs77853563-G	0.039109	2E-10		0.036351938	[0.025-0.047] unit decrease	Affymetrix [93095623] (imputed)	N
983	chr5	52193441	52193442	rs77853563	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	5q11.2	NR	rs77853563-G	0.03925	7E-11		0.031035	[0.022-0.04] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
983	chr5	52193441	52193442	rs77853563	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	5q11.2		rs77853563-?	NR	2E-11				NR [~ 8900000] (imputed)	N
983	chr5	52194326	52194327	rs1979398	28809852	Liu L	2017-08-15	Transl Psychiatry	The SNP-set based association study identifies ITGA1 as a susceptibility gene of attention-deficit/hyperactivity disorder in Han Chinese.	Attention deficit hyperactivity disorder	1,033 Han Chinese ancestry cases, 950 Han Chinese ancestry controls	1,441 Han Chinese ancestry  cases, 1,447 Han Chinese ancestry controls	5q11.2	ITGA1	rs1979398-?	NR	3E-6		1.23	[NR]	Affymetrix [717417]	N
983	chr5	52195032	52195033	rs1551943	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	5q11.2	ITGA1	rs1551943-A	0.23	6E-10		1.08	[1.05-1.10]	Affymetrix, Illumina [6224355] (imputed)	N
983	chr5	52195032	52195033	rs1551943	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FEV1/FVC)	48,943 European ancestry individuals	57,176 European ancestry individuals, 38,199 individuals.	5q11.2	ITGA1	rs1551943-A	0.23	2E-18		0.041	[0.031-0.051] unit decrease	Affymetrix [27624732] (imputed)	N
983	chr5	52195032	52195033	rs1551943	21946350	Soler Artigas M	2011-09-25	Nat Genet	Genome-wide association and large-scale follow up identifies 16 new loci influencing lung function.	Pulmonary function	48,201 European ancestry individuals	46,411 European ancestry individuals	5q11.2	ITGA1	rs1551943-G	NR	2E-6	(FEV1/FVC)	0.026	[0.014-0.038] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
983	chr5	52196260	52196261	rs78464352	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q11.2	NR	rs78464352-A	0.0981762	1E-10				Affymetrix, Illumina [24653286] (imputed)	N
983	chr5	52196260	52196261	rs78464352	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q11.2	NR	rs78464352-A	0.097504	4E-13				Affymetrix, Illumina [24558453] (imputed)	N
983	chr5	52201926	52201927	rs7701575	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	5q11.2		rs7701575-A	NR	1E-9		0.0169	[0.011-0.022] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
983	chr5	52201926	52201927	rs7701575	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q11.2	NR	rs7701575-A	0.0976155	7E-14				Affymetrix, Illumina [24332387] (imputed)	N
983	chr5	52210121	52210122	rs16880493	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	5q11.2		rs16880493-G	NR	1E-8		0.0154	[0.01-0.021] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
983	chr5	52214847	52214848	rs2279586	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	5q11.2		rs2279586-A	NR	6E-9		0.016	[0.011-0.021] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
983	chr5	52221747	52221748	rs60925406	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	5q11.2	ITGA1	rs60925406-C	0.058117	1E-10		0.030336648	[0.021-0.04] unit decrease	Affymetrix [93095623] (imputed)	N
983	chr5	52230464	52230464	rs76417956	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	5q11.2	ITGA1, CTD-2175A23.1	rs76417956-AT	0.058519	3E-11		0.031289477	[0.022-0.041] unit decrease	Affymetrix [93095623] (imputed)	N
983	chr5	52230464	52230464	rs76417956	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	5q11.2	NR	rs76417956-I	0.058538	2E-10		0.027755	[0.019-0.036] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
983	chr5	52230464	52230464	rs76417956	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	5q11.2	NR	rs76417956-I	0.058552	4E-11		0.028858	[0.02-0.037] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
983	chr5	52252190	52252191	rs7035	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	5q11.2		rs7035-C	NR	9E-9		0.0118	[0.0079-0.0157] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
983	chr5	52274100	52274101	rs35597318	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	5q11.2		rs35597318-?	NR	4E-14				NR [~ 8900000] (imputed)	N
983	chr5	52279859	52279860	rs199639153	30130595	Dominguez-Cruz MG	2018-08-18	Gene	Pilot genome-wide association study identifying novel risk loci for type 2 diabetes in a Maya population.	Type 2 diabetes	45 Maya ancestry cases, 47 Maya ancestry controls	NA	5q11.2	ITGA1, ITGA2	rs199639153-?	0.8065	4E-6		8.264462		Affymetrix [757439]	N
984	chr5	52315681	52315682	rs62357230	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	5q11.2	ITGA1	rs62357230-A	0.0339	6E-6		1.09	[1.05-1.13]	Affymetrix, Illumina [~ 27000000] (imputed)	N
984	chr5	52328875	52328876	rs3776790	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs3776790-T	0.771595	8E-12		0.0712395	[0.05-0.092] increase	Affymetrix [11014269] (imputed)	N
984	chr5	52347368	52347369	rs1126643	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	5q11.2	ITGA2	rs1126643-T	0.400731	1E-10		0.0148544	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
984	chr5	52368246	52368247	rs147264084	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	5q11.2	ITGA2	rs147264084-T	0.224844	3E-11		0.017811252	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
984	chr5	52373809	52373810	rs3212603	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs3212603-C	0.76055	8E-10		0.0634603	[0.043-0.084] decrease	Affymetrix [11014269] (imputed)	N
984	chr5	52411327	52411328	rs62359376	27927641	Ombrello MJ	2016-12-07	Ann Rheum Dis	Genetic architecture distinguishes systemic juvenile idiopathic arthritis from other forms of juvenile idiopathic arthritis: clinical and therapeutic implications.	Systemic juvenile idiopathic arthritis	178 European ancestry cases, 434 European ancestry controls, 81 Hispanic/Latin American cases, 177 Hispanic/Latin American controls, 511 cases, 6,336 controls	NA	5q11.2	LOC257396, MOCS2	rs62359376-?		4E-6	(Dominant)	1.7	[1.40-2.20]	Illumina [5600610] (imputed)	N
984	chr5	52419095	52419096	rs921030	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	5q11.2	NR	rs921030-?	NR	5E-6		4.581	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
984	chr5	52420937	52420938	rs27419	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	5q11.2	MOCS2, ITGA2	rs27419-?		1E-8				NR [6786993] (imputed)	N
984	chr5	52420937	52420938	rs27419	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	5q11.2	NR	rs27419-C	NR	7E-6		1.0526316	[NR]	Illumina [7158791] (imputed)	N
985	chr5	52432900	52432902	rs775020821	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	5q11.2	CTD-2366F13.1	rs775020821-T	0.0011	6E-6		1.3501	[0.77-1.93] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
985	chr5	52483683	52483684	rs140654574	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5q11.2		rs140654574-?	NR	1E-10				NR [~ 8900000] (imputed)	N
985	chr5	52508590	52508591	rs116623789	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Cerebrospinal fluid p-tau levels in mild cognitive impairment	581 European ancestry mild cognitive impairment cases	NA	5q11.2	RPL13AP13, RPS19P4	rs116623789-C	0.02	8E-6		1.29	[0.72-1.86] unit decrease	Illumina [8446615] (imputed)	N
985	chr5	52508590	52508591	rs116623789	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Cerebrospinal fluid p-tau levels	305 European ancestry cognitively normal individuals, 581 European ancestry mild cognitive impairment cases, 190 European ancestry Alzheimer's disease dementia cases	NA	5q11.2	RPL13AP13, RPS19P4	rs116623789-C	0.02	5E-7		1.12	[0.69-1.55] unit decrease	Illumina [8454806] (imputed)	N
985	chr5	52538616	52538617	rs27906	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Cardio-cerebrovascular disease in dyslipidemia	1,039 Korean ancestry cases, 19,727 Korean ancestry controls	NA	5q11.2		rs27906-T	0.3195	3E-6		0.7855	[0.71-0.8689]	Affymetrix [7975321] (imputed)	N
985	chr5	52552238	52552239	rs27323	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals	5q11.2		rs27323-G	0.390572	5E-53		0.137672	[0.12-0.16] increase	Affymetrix [11014269] (imputed)	N
985	chr5	52552238	52552239	rs27323	32716492	Simcoe MJ	2020-07-27	Hum Mol Genet	Genome-wide association study of corneal biomechanical properties identifies over 200 loci providing insight into the genetic aetiology of ocular diseases.	Corneal hysteresis	106,041 European ancestry individuals	9,029 European ancestry individuals	5q11.2	MOCS2	rs27323-G	0.392	5E-60		0.114	[0.1-0.13] unit increase	Affymetrix [12000000] (imputed)	N
985	chr5	52552238	52552239	rs27323	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	5q11.2	NR	rs27323-G	0.421661209612817	9E-6	(IGP64)	0.1399	[0.078-0.202] unit decrease	Illumina [~ 2500000] (imputed)	N
985	chr5	52557593	52557594	rs38059	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	5q11.2	LOC257396, FST	rs38059-?	NR	5E-8		0.016555721	[0.011-0.022] unit increase	Illumina [27896057] (imputed)	N
986	chr5	52560643	52560644	rs38055	24927181	Navarini AA	2014-06-13	Nat Commun	Genome-wide association study identifies three novel susceptibility loci for severe Acne vulgaris.	Acne (severe)	1,893 European ancestry cases, 5,132 European ancestry controls	2,063 European ancestry cases, 1,970 European ancestry controls	5q11.2	AK097288, FST, ITGA1, ITGA2, LOC257396, PELO, MOCS2, NDUFS4	rs38055-A	0.3197	5E-9		1.18	[1.09-1.27]	Illumina [7300000] (imputed)	N
986	chr5	52571757	52571758	rs419816	32723796	Mehta SD	2020-07-28	mSystems	Host Genetic Factors Associated with Vaginal Microbiome Composition in Kenyan Women.	Vaginal microbiome composition (community state type)	171 Kenyan ancestry individuals	NA	5q11.2	LOC257396, FST	rs419816-C	0.13	1E-5		0.45	NR unit increase	Illumina [336151] (imputed)	N
986	chr5	52581178	52581179	rs12515400	33649486	Hardcastle AJ	2021-03-01	Commun Biol	A multi-ethnic genome-wide association study implicates collagen matrix integrity and cell differentiation pathways in keratoconus.	Keratoconus	2,116 European ancestry cases, 24,626 European ancestry controls	1, 389 European ancestry cases, 79,727 European ancestry controls, 759 South Asian ancestry cases, 8,009 South Asian ancestry controls, 405 African ancestry cases, 4,185 African ancestry controls	5q11.2	FST, ITGA2, MOCS2	rs12515400-T	NR	3E-18		0.217	[0.17-0.27] unit increase	Affymetrix [7701190] (imputed)	N
986	chr5	52582930	52582931	rs4865762	29235454	Choquet H	2017-12-13	Nat Commun	A large multi-ethnic genome-wide association study identifies novel genetic loci for intraocular pressure.	Intraocular pressure	56,819 European ancestry individuals, 5,748 Hispanic/Latino individuals, 5,119 East Asian ancestry individuals, 2,070 African American individuals	37,930 European and Asian ancestry individuals	5q11.2	MOCS2, FST	rs4865762-?	NR	1E-16		0.11	[NR] unit increase	Affymetrix [at least 665000] (imputed)	N
986	chr5	52583133	52583133	rs530474810	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	5q11.2	LOC257396, FST	rs530474810-T	0.515	2E-26		0.1452	[0.12-0.17] unit increase	Affymetrix [~ 11900000] (imputed)	N
986	chr5	52586584	52586585	rs251526	31809533	Han X	2019-09-06	Hum Mol Genet	Genome-wide association analysis of 95 549 individuals identifies novel loci and genes influencing optic disc morphology.	Optic disc size	67,040 British ancestry individuals	28,509 European ancestry individuals	5q11.2	FST	rs251526-A	0.92	4E-10		0.02	unit decrease	Affymetrix [8928767] (imputed)	N
986	chr5	52594006	52594007	rs12189522	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	5q11.2	NR	rs12189522-G	0.018	1E-6	(EA)	0.1158	[0.069-0.162] unit increase	Illumina [~ 11800000] (imputed)	N
986	chr5	52602940	52602941	rs7737693	32528159	Choquet H	2020-06-11	Commun Biol	A multiethnic genome-wide analysis of 44,039 individuals identifies 41 new loci associated with central corneal thickness.	Central corneal thickness	32,292 European ancestry individuals, 9,623 East Asian ancestry individuals, 1,367 Hispanic/Latino individuals, 757 African American  individuals	NA	5q11.2	FST	rs7737693-?	NA	1E-8		1.4	[0.91-1.89] unit increase	Affymetrix [5541230] (imputed)	N
986	chr5	52625852	52625853	rs1363919	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	5q11.2	LOC257396, FST	rs1363919-T	0.5187	7E-24		0.1334	[0.11-0.16] unit increase	Affymetrix [~ 11900000] (imputed)	N
986	chr5	52631066	52631067	rs629725	35132056	Mitchell BL	2022-02-07	Nat Commun	Genome-wide association meta-analysis identifies 29 new acne susceptibility loci.	acne vulgaris	20,165 European ancestry cases, 595,231 European ancestry controls	NA	5q11.2	NR	rs629725-T	0.3393	4E-28		1.15	[1.12-1.17]	Affymetrix, Illumina [7072771] (imputed)	N
986	chr5	52631066	52631067	rs629725	30542056	Petridis C	2018-12-12	Nat Commun	Genome-wide meta-analysis implicates mediators of hair follicle development and morphogenesis in risk for severe acne.	Acne (severe)	5,602 European ancestry cases, 21,120 European ancestry controls	NA	5q11.2	FST	rs629725-T	0.33	2E-15		1.2	[1.14-1.25]	Illumina [up to 7441713] (imputed)	N
986	chr5	52642986	52642987	rs37791	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs37791-C	0.151538	1E-15		0.0948922	[0.07-0.12] increase	Affymetrix [11014269] (imputed)	N
986	chr5	52644646	52644647	rs37792	31469419	Manichaikul A	2019-08-30	Int J Cancer	Identification of novel epithelial ovarian cancer loci in Women of African Ancestry.	High-grade serous ovarian cancer	537 African ancestry cases, 1,235 African ancestry controls	NA	5q11.2	FST	rs37792-A	0.658	6E-8		1.5384616	[1.32-1.82]	Illumina [11083029] (imputed)	N
986	chr5	52658883	52658884	rs12658752	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Cardio-cerebrovascular disease in dyslipidemia	1,039 Korean ancestry cases, 19,727 Korean ancestry controls	NA	5q11.2		rs12658752-T	0.3169	6E-6		0.792	[0.7161-0.8759]	Affymetrix [7975321] (imputed)	N
986	chr5	52664795	52664796	rs11948445	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	5q11.2	FST	rs11948445-A	0.589468	2E-8		0.0111655	[0.0073-0.015] unit increase	Affymetrix [NR] (imputed)	N
986	chr5	52665229	52665230	rs35868327	30820047	Kunkle BW	2019-02-28	Nat Genet	Genetic meta-analysis of diagnosed Alzheimer's disease identifies new risk loci and implicates A?, tau, immunity and lipid processing.	Alzheimer's disease (late onset)	21,982 European ancestry cases, 41,944 European ancestry controls	up to 13,292 European ancestry cases, up to 17,219 European ancestry controls	5q11.2	LOC257396, FST	rs35868327-T	0.987	3E-7		1.4705882	[1.27-1.69]	Affymetrix, Illumina [11480632] (imputed)	N
986	chr5	52670973	52670974	rs12514897	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	5q11.2	FST, ARL15	rs12514897-?		6E-12				Affymetrix, Illumina [NR] (imputed)	N
986	chr5	52678867	52678868	rs35560597	28235828	Traglia M	2017-04-03	G3 (Bethesda)	Independent Maternal and Fetal Genetic Effects on Midgestational Circulating Levels of Environmental Pollutants.	Midgestational circulating levels of PCBs	329 Hispanic mothers, 273 European ancestry mothers, 122 Asian ancestry mothers, 23 South Asian ancestry mothers, 21 African American mothers, 22 other ancestry mothers	NA	5q11.2	FST, NDUFS4	rs35560597-?		8E-8	(sum PCB)	0.15	[-0.144-0.444] unit increase	Affymetrix [629686]	N
986	chr5	52686920	52686921	rs77470973	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	5q11.2		rs77470973-?	NR	2E-10				NR [~ 8900000] (imputed)	N
987	chr5	52694836	52694837	rs4254863	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	5q11.2	NR	rs4254863-C	0.0979	5E-6	(EA)	0.0472	[0.027-0.068] unit increase	Illumina [~ 11800000] (imputed)	N
987	chr5	52737392	52737393	rs1978464	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	5q11.2	RP11-289K10.1	rs1978464-A	NR	1E-8		0.0194739	[0.013-0.026] unit increase	Affymetrix [323858] (imputed)	N
987	chr5	52744030	52744031	rs62359317	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	5q11.2		rs62359317-?	NR	1E-8				NR [~ 8900000] (imputed)	N
987	chr5	52763858	52763859	rs72748110	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	5q11.2		rs72748110-?	NR	2E-9				NR [~ 8900000] (imputed)	N
987	chr5	52767108	52767109	rs62370472	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	5q11.2	FST	rs62370472-T	0.79093	1E-13		0.00443922	[0.0032-0.0057] unit decrease	Affymetrix [13995440] (imputed)	N
987	chr5	52767108	52767109	rs62370472	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	5q11.2	intergenic	rs62370472-T	0.791	1E-27		0.0253	[0.021-0.03] unit increase	Affymetrix [18391927] (imputed)	N
987	chr5	52767108	52767109	rs62370472	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	5q11.2	NR	rs62370472-T	0.790594	2E-8		0.0135304	[0.0088-0.0182] unit decrease	NR [NR]	N
987	chr5	52767108	52767109	rs62370472	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5q11.2		rs62370472-?	NR	2E-17				NR [~ 8900000] (imputed)	N
987	chr5	52774509	52774510	rs62370480	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Follistatin levels	21,758 European ancestry individuals	9,173 individuals	5q11.2		rs62370480-A	0.22	2E-21		0.0988	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
987	chr5	52774509	52774510	rs62370480	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	5q11.2	ARL15	rs62370480-A	0.2195	2E-6		1.04	[1.02-1.05]	Affymetrix, Illumina [~ 27000000] (imputed)	N
987	chr5	52780142	52780143	rs41270301	27149984	Degenhardt F	2016-05-05	Hum Mol Genet	Genome-wide association study of serum coenzyme Q10 levels identifies susceptibility loci linked to neuronal diseases.	Coenzyme Q10 levels	up to 1,300 European ancestry individuals	NA	5q11.2	Intergenic	rs41270301-C		4E-6		0.077	[0.044-0.11] unit increase	Affymetrix, Illumina [up to 17017474] (imputed)	N
987	chr5	52783407	52783408	rs1469101	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	5q11.2	NR	rs1469101-T	0.6	3E-8		0.0104	[0.0067-0.0141] unit decrease	NR [NR]	N
987	chr5	52787357	52787358	rs12520984	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	5q11.2	FST	rs12520984-C	0.3224	8E-13		0.0019	[0.0013-0.0025] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
987	chr5	52787357	52787358	rs12520984	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	5q11.2	FST	rs12520984-C	0.3264	6E-13		0.0022	[0.0014-0.003] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
987	chr5	52789197	52789198	rs62370510	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	5q11.2		rs62370510-A	0.1771	6E-9		0.0109	[0.0072-0.0146] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
987	chr5	52789197	52789198	rs62370510	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	5q11.2	Intergenic	rs62370510-A	0.1771	9E-10	(MTAG)	0.0106	[0.0073-0.0139] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
987	chr5	52807475	52807476	rs1833888	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	5q11.2	intergenic	rs1833888-T	0.2322	8E-21		0.02	[0.016-0.024] unit decrease	Affymetrix [18391927] (imputed)	N
988	chr5	52832774	52832775	rs10063311	33731350	Nandakumar P	2021-03-17	Sci Adv	Nuclear genome-wide associations with mitochondrial heteroplasmy.	Mitochondrial heteroplasmy measurement	982,072 European ancestry individuals	NA	5q11.2	NDUFS4	rs10063311-G	0.224	9E-10		0.006	[0.004-0.008] unit decrease	NR [57525634] (imputed)	N
988	chr5	52843132	52843133	rs10057745	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	5q11.2	NR	rs10057745-A	0.633884	7E-12		0.0497868	[0.036-0.064] unit increase	Affymetrix [17914406] (imputed)	N
988	chr5	52848592	52848593	rs1991002	34698592	Yang J	2021-10-26	Stress	Genome-wide association studies of stress score in a Korean Cohort.	High physical stress	8,104 Korean ancestry individuals	NA	5q11.2		rs1991002-A	NR	2E-6		1.18	[1.1-1.26]	Affymetrix [320700]	N
988	chr5	52856503	52856504	rs2279516	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	5q11.2	NR	rs2279516-?	NR	1E-8	(cerebellar vermal lobules VIII X)			NR [9227495] (imputed)	N
988	chr5	52903063	52903064	rs73754267	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	5q11.2		rs73754267-?	NR	8E-10				NR [~ 8900000] (imputed)	N
989	chr5	52976824	52976825	rs2637030	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	5q11.2	NR	rs2637030-?	NR	5E-9				Affymetrix [~ 8270000] (imputed)	N
989	chr5	52976824	52976825	rs2637030	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	5q11.2	NDUFS4	rs2637030-G	0.37460000000000004	1E-8	(EA)	0.0221	[0.014-0.03] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
989	chr5	52976824	52976825	rs2637030	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	5q11.2	NDUFS4	rs2637030-G	0.36439999999999995	5E-8		0.0202	[0.013-0.027] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
989	chr5	52976824	52976825	rs2637030	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	5q11.2	NDUFS4	rs2637030-G	0.37460000000000004	1E-6	(EA)	0.0214	[0.013-0.03] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
989	chr5	52976824	52976825	rs2637030	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	5q11.2	NDUFS4	rs2637030-G	0.36439999999999995	2E-6		0.0203	[0.012-0.029] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
989	chr5	52976824	52976825	rs2637030	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	5q11.2	NDUFS4	rs2637030-?	0.37460000000000004	1E-7	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
989	chr5	52976824	52976825	rs2637030	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	5q11.2	NDUFS4	rs2637030-?	0.36439999999999995	3E-7				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
989	chr5	52976954	52976955	rs2607505	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	5q11.2	Intergenic	rs2607505-C	0.6877	4E-9	(MTAG)	0.0083	[0.0056-0.011] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
989	chr5	53018403	53018404	rs77325285	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia x sex interaction	31,567 European ancestry cases, 37,494 European ancestry controls, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	NA	5q11.2	NDUFS4, LINC02105	rs77325285-A	0.093	2E-6		0.2197	[0.13-0.31] unit decrease	NR [NR] (imputed)	N
989	chr5	53018403	53018404	rs77325285	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia x sex interaction	31,567 European ancestry cases, 37,494 European ancestry controls	NA	5q11.2	NDUFS4, LINC02105	rs77325285-A	0.093	2E-6		0.2197	[0.13-0.31] unit decrease	NR [NR] (imputed)	N
989	chr5	53018403	53018404	rs77325285	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia	11,361 European ancestry female cases, 18,119 European ancestry female controls, 20,206 European ancestry male cases, 19,375 European ancestry male controls, 686 East Asian ancestry female cases, 1,907 East Asian ancestry female controls, 1,150 East Asian ancestry male cases, 1,476 East Asian ancestry male controls	NA	5q11.2	NDUFS4, LINC02105	rs77325285-A	0.093	9E-6	(male)	0.1329	[0.074-0.192] unit increase	NR [NR] (imputed)	N
989	chr5	53018403	53018404	rs77325285	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia	11,361 European ancestry female cases, 18,119 European ancestry female controls, 20,206 European ancestry male cases, 19,375 European ancestry male controls	NA	5q11.2	NDUFS4, LINC02105	rs77325285-A	0.093	9E-6	(male)	0.1329	[0.074-0.192] unit increase	NR [NR] (imputed)	N
989	chr5	53020820	53020821	rs3103602	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	5q11.2	NR	rs3103602-?	NR	1E-8	(cerebellar vermal lobules VIII X)			NR [9227495] (imputed)	N
989	chr5	53033324	53033325	rs198940	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	5q11.2		rs198940-?	NR	7E-8				NR [~ 8900000] (imputed)	N
989	chr5	53067319	53067320	rs62370277	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	5q11.2	NDUFS4	rs62370277-?	NR	3E-17		1.1106175	NR	Affymetrix [9154080] (imputed)	N
989	chr5	53071287	53071288	rs67017972	29907492	Nakahara S	2018-06-12	Schizophr Res	Polygenic risk score, genome-wide association, and gene set analyses of cognitive domain deficits in schizophrenia.	Verbal memory	2 Alaskan native ancestry schizophrenia cases, 18 Asian ancestry schizophrenia cases, 20 African American schizophrenia cases, 1 Native Hawaiian ancestry schizophrenia cases, 86 European ancestry schizophrenia cases, 2 Alaskan native ancestry controls, 10 Asian ancestry controls, 17 African American controls, 1 Native Hawaiian ancestry controls, 106 European ancestry controls	NA	5q11.2	NDUFS4	rs67017972-A		4E-8		0.6	[NR] unit increase	Illumina [NR] (imputed)	N
990	chr5	53098205	53098206	rs148906333	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Brown vs. black hair color	269,394 British ancestry brown hair individuals, 14,526 British ancestry black hair individuals	NA	5q11.2	ARL15	rs148906333-?	NR	8E-10		1.1145787	NR	Affymetrix [9154080] (imputed)	N
990	chr5	53112623	53112624	rs6875907	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	5q11.2		rs6875907-?	NR	2E-92				NR [~ 8900000] (imputed)	N
990	chr5	53112623	53112624	rs6875907	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	5q11.2	LINC02105	rs6875907-?	NR	2E-35		1.10011	NR	Affymetrix [9154080] (imputed)	N
990	chr5	53116122	53116123	rs17248377	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	5q11.2		rs17248377-?	NR	2E-8				NR [~ 8900000] (imputed)	N
990	chr5	53116122	53116123	rs17248377	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	5q11.2	LOC105378966	rs17248377-A	0.2398	2E-11		1.073	NR	Affymetrix [9154080] (imputed)	N
990	chr5	53116965	53116966	rs1553477	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	5q11.2	NR	rs1553477-C	0.537942	2E-10		0.0424139	[0.029-0.056] unit decrease	Affymetrix [17914406] (imputed)	N
990	chr5	53116965	53116966	rs1553477	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Monobrow	69,284 European ancestry individuals	NA	5q11.2	NDUFS4, ARL15	rs1553477-?	NR	2E-17		0.031	[0.038-0.024] unit decrease	Illumina [12039491] (imputed)	N
990	chr5	53125916	53125917	rs11956282	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	5q11.2	Intergenic	rs11956282-A	0.8622	2E-8	(MTAG)	0.0186	[0.012-0.025] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
990	chr5	53167116	53167117	rs702606	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	5q11.2		rs702606-?	NR	1E-8				NR [~ 8900000] (imputed)	N
990	chr5	53167116	53167117	rs702606	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	5q11.2		rs702606-T	0.8654	9E-9		0.0118	[0.0077-0.0159] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
990	chr5	53167116	53167117	rs702606	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	5q11.2	Intergenic	rs702606-T	0.8654	5E-10	(MTAG)	0.0119	[0.0082-0.0156] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
990	chr5	53169519	53169520	rs702612	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	5q11.2	ARL15, ASS1P9, MIR581, NDUFS4	rs702612-A	NR	1E-6	(sleep onset, weekdays)	0.4556	[0.27-0.64] unit increase	Affymetrix [7141204] (imputed)	N
990	chr5	53178956	53178957	rs11950121	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	5q11.2	ARL15, ASS1P9, MIR581, MIR4459	rs11950121-?		3E-6		1.2182	[1.13-1.32]	Illumina [9389922] (imputed)	N
990	chr5	53183168	53183169	rs138015091	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	5q11.2		rs138015091-?	NR	9E-9				NR [~ 8900000] (imputed)	N
990	chr5	53183180	53183181	rs72763113	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	5q11.2	ARL15	rs72763113-C	0.020064	1E-12		0.057726048	[0.042-0.074] unit decrease	Affymetrix [93095623] (imputed)	N
990	chr5	53185892	53185893	rs56086233	32339537	Roberts V	2020-04-24	J Invest Dermatol	Genome wide association study identifies genetic associations with perceived age.	Youthful appearance (self-reported)	423,992 European ancestry individuals	NA	5q11.2	ARL15	rs56086233-T	0.600808	3E-12		1.0314789	NR	Affymetrix [~ 9600000] (imputed)	N
990	chr5	53194626	53194627	rs114989019	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	5q11.2		rs114989019-?	NR	2E-9				NR [~ 8900000] (imputed)	N
990	chr5	53206094	53206095	rs72763141	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	5q11.2	ARL15	rs72763141-C	0.020157	6E-10		0.050089657	[0.034-0.066] unit decrease	Affymetrix [93095623] (imputed)	N
990	chr5	53206094	53206095	rs72763141	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	5q11.2	ARL15	rs72763141-C	0.0201519999999999	4E-13		0.058339484	[0.043-0.074] unit decrease	Affymetrix [93095623] (imputed)	N
990	chr5	53206094	53206095	rs72763141	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	5q11.2	ARL15	rs72763141-C	0.020147	1E-13		0.059661966	[0.044-0.075] unit decrease	Affymetrix [93095623] (imputed)	N
991	chr5	53222780	53222781	rs2253601	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	5q11.2	ARL15	rs2253601-A	NR	4E-9		0.0253365	[0.017-0.034] unit decrease	Affymetrix [323858] (imputed)	N
991	chr5	53256678	53256679	rs702640	33539483	Li Z	2021-02-04	PLoS One	Bivariate genome-wide association study (GWAS) of body mass index and blood pressure phenotypes in northern Chinese twins.	Body mass index and diastolic blood pressure (bivariate analysis)	274 Chinese ancestry dizygotic twins	NA	5q11.2	ARL15	rs702640-?	NR	7E-6				Illumina [7401356] (imputed)	N
991	chr5	53263962	53263963	rs76026733	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	5q11.2	NR	rs76026733-C	NR	1E-9		0.0326	[0.022-0.043] unit decrease	Affymetrix [9000000] (imputed)	N
991	chr5	53263962	53263963	rs76026733	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	5q11.2	NR	rs76026733-C	NR	4E-13		0.0389	[0.028-0.049] unit increase	Affymetrix [9000000] (imputed)	N
991	chr5	53263962	53263963	rs76026733	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	5q11.2	NR	rs76026733-C	NR	7E-23		0.0526	[0.042-0.063] unit increase	Affymetrix [9000000] (imputed)	N
991	chr5	53263962	53263963	rs76026733	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	5q11.2	NR	rs76026733-C	NR	5E-24		0.0541	[0.044-0.065] unit decrease	Affymetrix [9000000] (imputed)	N
991	chr5	53270187	53270188	rs702635	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	5q11.2	ARL15	rs702635-T	NR	2E-8		0.0174786	[0.011-0.024] unit increase	Affymetrix [321114] (imputed)	N
991	chr5	53271419	53271420	rs702634	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	5q11.2	ARL15	rs702634-A	0.692812	1E-15		0.0197747	[0.015-0.025] unit increase	Affymetrix [93095623] (imputed)	N
991	chr5	53271419	53271420	rs702634	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	5q11.2	ARL15	rs702634-A	0.692823	2E-19		0.022282181	[0.017-0.027] unit increase	Affymetrix [93095623] (imputed)	N
991	chr5	53271419	53271420	rs702634	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	5q11.2	ARL15	rs702634-A	0.692797	3E-11		0.01621934	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
991	chr5	53271419	53271420	rs702634	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	5q11.2	ARL15	rs702634-A	0.692798	4E-14		0.018363059	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
991	chr5	53271419	53271420	rs702634	32341051	Wang X	2020-04-01	BMJ Open Diabetes Res Care	Shared genetic architecture and casual relationship between leptin levels and type 2 diabetes: large-scale cross-trait meta-analysis and Mendelian randomization analysis.	Circulating leptin levels or type 2 diabetes	254,263 individuals	NA	5q11.2	ARL15	rs702634-?	NR	4E-9				NR [NR]	N
991	chr5	53271419	53271420	rs702634	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	5q11.2	ARL15	rs702634-A	0.82	8E-6		1.05	1.03-1.08	Illumina [12557761] (imputed)	N
991	chr5	53271419	53271420	rs702634	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	5q11.2	ARL15	rs702634-A	0.69	8E-14		1.05	[1.04-1.07]	Affymetrix, Illumina [~ 27000000] (imputed)	N
991	chr5	53271419	53271420	rs702634	30220432	Haas ME	2018-09-06	Am J Hum Genet	Genetic Association of Albuminuria with Cardiometabolic Disease and Blood Pressure.	Urinary albumin excretion	382,500 European ancestry individuals	NA	5q11.2	ARL15	rs702634-A	0.692	8E-9		0.01042	[0.0069-0.014] unit increase	Affymetrix [11709857] (imputed)	N
991	chr5	53271419	53271420	rs702634	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	5q11.2	ARL15	rs702634-A	0.6938	3E-9		0.05	[0.034-0.066] unit increase	Affymetrix, Illumina [NR] (imputed)	N
991	chr5	53271419	53271420	rs702634	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	5q11.2	ARL15	rs702634-A	0.6938	3E-6	(EA)	0.0498	[0.029-0.071] unit increase	Affymetrix, Illumina [NR] (imputed)	N
991	chr5	53271419	53271420	rs702634	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	5q11.2	ARL15	rs702634-A	0.6915	1E-11		0.02640058	[0.019-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
991	chr5	53271419	53271420	rs702634	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	5q11.2	ARL15	rs702634-A	0.6915	5E-10		0.02412668	[0.017-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
991	chr5	53271419	53271420	rs702634	24509480	Mahajan A	2014-02-09	Nat Genet	Genome-wide trans-ancestry meta-analysis provides insight into the genetic architecture of type 2 diabetes susceptibility.	Type 2 diabetes	12,171 European ancestry cases, 56,862 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls	21,491 European ancestry cases, 55,647 European ancestry controls	5q11.2	ARL15	rs702634-A		7E-9		1.06	[1.04-1.09]	Affymetrix, Illumina [2500000] (imputed)	N
991	chr5	53272663	53272664	rs4865796	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting insulin	151,013 European ancestry individuals	NA	5q11.2	ARL15	rs4865796-A	0.6807	7E-17		0.0165	[0.013-0.02] unit increase	Affymetrix, Illumina [32635793] (imputed)	N
991	chr5	53272663	53272664	rs4865796	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting insulin	47,806 European ancestry men	NA	5q11.2	ARL15	rs4865796-A	0.657003	5E-6		0.017741	[0.01-0.025] unit increase	Affymetrix, Illumina [8700000] (imputed)	N
991	chr5	53272663	53272664	rs4865796	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting insulin	105,056 European ancestry individuals	NA	5q11.2	ARL15	rs4865796-A	0.657003	8E-10		0.015619	[0.011-0.021] unit increase	Affymetrix, Illumina [8700000] (imputed)	N
991	chr5	53272663	53272664	rs4865796	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	5q11.2	NR	rs4865796-G	0.3184	5E-21		0.0466	[0.037-0.056] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
991	chr5	53272663	53272664	rs4865796	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	5q11.2	NR	rs4865796-G	0.2906	5E-30		0.0481	[0.04-0.056] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
991	chr5	53272663	53272664	rs4865796	31630189	Casanova F	2019-10-20	Hum Mol Genet	A genome-wide association study implicates multiple mechanisms influencing raised urinary albumin-creatinine ratio.	Urinary albumin-to-creatinine ratio	437,027 European ancestry individuals	60,130 individuals	5q11.2	ARL15	rs4865796-A	0.692	8E-12	(EA)	0.015	[0.011-0.019] unit increase	NR [12082474] (imputed)	N
991	chr5	53272663	53272664	rs4865796	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	5q11.2		rs4865796-?	NR	2E-8				NR [~ 8900000] (imputed)	N
991	chr5	53272663	53272664	rs4865796	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	5q11.2	NR	rs4865796-G	NR	1E-6		0.013	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
991	chr5	53272663	53272664	rs4865796	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	5q11.2	ARL15	rs4865796-G	0.306909895697633	1E-11		0.053	[0.038-0.068] unit decrease	NR [5035015] (imputed)	N
991	chr5	53273341	53273342	rs787544	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	5q11.2	ARL15	rs787544-T	NR	3E-9		0.0185876	[0.012-0.025] unit increase	Affymetrix [323858] (imputed)	N
991	chr5	53274466	53274467	rs28499105	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	5q11.2	ARL15	rs28499105-A	0.708	5E-9		0.0171	[0.011-0.023] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
991	chr5	53275369	53275370	rs76027714	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals	NA	5q11.2	ARL15	rs76027714-A	0.9238	1E-9		0.0234446	[0.016-0.031] unit increase	Affymetrix, Illumina [8603712] (imputed)	N
991	chr5	53276300	53276301	rs1664781	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	5q11.2	MIR581	rs1664781-G	0.306194	3E-16		0.00457637	[0.0035-0.0057] unit decrease	Affymetrix [13995440] (imputed)	N
991	chr5	53276300	53276301	rs1664781	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	5q11.2	ARL15	rs1664781-A	0.69	6E-10		6.18	z-score increase	Affymetrix [4312306] (imputed)	N
991	chr5	53282648	53282649	rs1664789	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	5q11.2	ARL15	rs1664789-C	0.41	4E-8	(men)	0.026	unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
991	chr5	53283629	53283630	rs1694068	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	5q11.2		rs1694068-?	NR	4E-10		0.00587387	[0.004-0.0077] unit decrease	NR [NR]	N
991	chr5	53283629	53283630	rs1694068	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	5q11.2		rs1694068-A	NR	9E-9		0.0478	[0.032-0.064] unit increase	Affymetrix, Illumina [25845091] (imputed)	N
991	chr5	53283629	53283630	rs1694068	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	5q11.2		rs1694068-A	NR	1E-8		0.0131	[0.0086-0.0176] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
991	chr5	53283629	53283630	rs1694068	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls, 49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	5q11.2		rs1694068-A	NR	3E-8		0.0362	[0.023-0.049] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
991	chr5	53283629	53283630	rs1694068	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	5q11.2		rs1694068-A	NR	5E-11		0.0134	[0.0095-0.0173] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
991	chr5	53283629	53283630	rs1694068	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	5q11.2	NR	rs1694068-A	NR	2E-9		0.0153	[0.01-0.02] unit decrease	Affymetrix [9000000] (imputed)	N
991	chr5	53283629	53283630	rs1694068	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	5q11.2	NR	rs1694068-A	0.61762	1E-10		0.012282	[0.0086-0.016] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
991	chr5	53283629	53283630	rs1694068	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	5q11.2	ARL15	rs1694068-T	0.382275	2E-8		0.035095084	[0.023-0.047] unit decrease	Affymetrix [7288503] (imputed)	N
991	chr5	53283629	53283630	rs1694068	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	5q11.2		rs1694068-?	NR	9E-17				NR [~ 8900000] (imputed)	N
991	chr5	53283629	53283630	rs1694068	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	5q11.2	NR	rs1694068-T	NR	1E-6		0.019	unit decrease	Affymetrix [at least 7091467] (imputed)	N
991	chr5	53283629	53283630	rs1694068	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	5q11.2	NR	rs1694068-T	0.392	1E-6	(EA)	0.021	unit decrease	Affymetrix [at least 7091467] (imputed)	N
991	chr5	53283629	53283630	rs1694068	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	5q11.2	NR	rs1694068-T	NR	7E-9		0.021	unit increase	Affymetrix [at least 7091467] (imputed)	N
991	chr5	53283629	53283630	rs1694068	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	5q11.2	NR	rs1694068-T	0.392	2E-8	(EA)	0.022	unit increase	Affymetrix [at least 7091467] (imputed)	N
991	chr5	53283629	53283630	rs1694068	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	5q11.2	ARL15	rs1694068-A	0.6164	8E-15		0.02882477	[0.022-0.036] unit increase	Affymetrix [~ 2500000] (imputed)	N
991	chr5	53283629	53283630	rs1694068	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	5q11.2	ARL15	rs1694068-T		7E-10		0.245	unit decrease	Affymetrix [at least 2696785] (imputed)	N
991	chr5	53283629	53283630	rs1694068	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	5q11.2	ARL15	rs1694068-T		6E-10		0.164	unit decrease	Affymetrix [at least 2696785] (imputed)	N
991	chr5	53285761	53285762	rs114118094	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	5q11.2	ARL15	rs114118094-T	0.064	4E-6		0.51	[0.028-0.992] ml/min/1.73m2 decrease	Affymetrix, Illumina [at least 5248638] (imputed)	N
991	chr5	53292389	53292390	rs7719168	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	5q11.2	ARL15	rs7719168-?	NR	4E-9				Affymetrix, Illumina [at least 5248638] (imputed)	N
991	chr5	53295545	53295546	rs111366116	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Creatinine levels	110,051 European ancestry individuals	NA	5q11.2		rs111366116-C	0.887739	2E-9		0.0336523	[0.023-0.045] unit increase	NR [11722792] (imputed)	N
991	chr5	53295545	53295546	rs111366116	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	5q11.2		rs111366116-T	NR	2E-40		0.0409	[0.035-0.047] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
991	chr5	53295545	53295546	rs111366116	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	5q11.2	ARL15	rs111366116-C	0.9137	2E-12		7.025	NR z score decrease	Illumina [26237160] (imputed)	N
991	chr5	53295545	53295546	rs111366116	28452372	Gorski M	2017-04-28	Sci Rep	1000 Genomes-based meta-analysis identifies 10 novel loci for kidney function.	Glomerular filtration rate (creatinine)	110,517 European ancestry individuals		5q11.2	ARL15	rs111366116-T	0.11	6E-10		0.0094	[0.0065-0.0123] unit increase	Affymetrix, Illumina [up to 10971307] (imputed)	N
991	chr5	53296157	53296158	rs3776720	32341051	Wang X	2020-04-01	BMJ Open Diabetes Res Care	Shared genetic architecture and casual relationship between leptin levels and type 2 diabetes: large-scale cross-trait meta-analysis and Mendelian randomization analysis.	Circulating leptin levels or type 2 diabetes	254,263 individuals	NA	5q11.2	ARL15	rs3776720-?	NR	5E-8				NR [NR]	N
991	chr5	53296556	53296557	rs59061738	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	5q11.2		rs59061738-G	NR	7E-14		0.017	[0.012-0.022] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
991	chr5	53298024	53298025	rs6450176	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	5q11.2	NR	rs6450176-G	NR	7E-8		0.023	unit decrease	Affymetrix [at least 7091467] (imputed)	N
991	chr5	53298024	53298025	rs6450176	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	5q11.2	NR	rs6450176-G	0.739	1E-7	(EA)	0.025	unit decrease	Affymetrix [at least 7091467] (imputed)	N
991	chr5	53298024	53298025	rs6450176	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	5q11.2	NR	rs6450176-G	NR	1E-6		0.019	unit increase	Affymetrix [at least 7091467] (imputed)	N
991	chr5	53298024	53298025	rs6450176	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	HDL cholesterol levels	34,930 East Asian ancestry individuals, 187,167 European ancestry individuals	8,741 Chinese ancestry individuals	5q11.2	ARL15	rs6450176-A	0.278	1E-9	(Trans-ethnic initial)	0.0254	[0.018-0.033] unit decrease (EA Beta values)	Affymetrix, Illumina [~ 1900000] (imputed)	N
991	chr5	53298024	53298025	rs6450176	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	5q11.2	ARL15	rs6450176-A	0.26	7E-10		0.025	[NR] unit decrease	NR [NR] (imputed)	N
991	chr5	53298024	53298025	rs6450176	22479202	Dastani Z	2012-03-29	PLoS Genet	Novel loci for adiponectin levels and their influence on type 2 diabetes and metabolic traits: a multi-ethnic meta-analysis of 45,891 individuals.	Adiponectin levels	29,347 European ancestry individuals	10,536 European ancestry individuals	5q11.2	ARL15	rs6450176-G	NR	6E-8		0.026	[NR] unit increase	Affymetrix, Illumina [NR] (imputed)	N
991	chr5	53298024	53298025	rs6450176	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	HDL cholesterol	99,900 European ancestry individuals	NA	5q11.2	ARL15	rs6450176-A	0.26	5E-8		0.49	[0.31-0.67] mg/dL decrease	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
991	chr5	53298715	53298716	rs79760705	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	5q11.2	ARL15	rs79760705-T	0.1076	1E-31		0.0056	[0.0046-0.0066] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
991	chr5	53298715	53298716	rs79760705	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	5q11.2	ARL15	rs79760705-T	0.1087	5E-30		0.0056	[0.0044-0.0068] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
991	chr5	53298761	53298762	rs3776717	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body mass index and type 2 diabetes (pairwise)	418,152 European ancestry individuals, 31,291 East Asian, South Asian, Hispanic and African American ancestry individuals	NA	5q11.2	ARL15	rs3776717-G	0.7197	2E-8				Affymetrix, Illumina [2331072] (imputed)	N
991	chr5	53298761	53298762	rs3776717	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body mass index and HDL-C (pairwise)	509,429 European ancestry individuals, 16,962 East Asian, South Asian, Hispanic and African American ancestry individuals	NA	5q11.2	ARL15	rs3776717-G	0.7197	7E-11				Affymetrix, Illumina [2331072] (imputed)	N
991	chr5	53300661	53300662	rs4311394	31178129	Spracklen CN	2019-06-06	Am J Hum Genet	Exome-Derived Adiponectin-Associated Variants Implicate Obesity and Lipid Biology.	Adiponectin levels	up to 60,465 European ancestry individuals, up to 2,568 East Asian ancestry individuals, up to 3,271 African American individuals, up to 1,435 Hispanic individuals	NA	5q11.2	ARL15	rs4311394-G	0.256538081245474	2E-7		0.03502866	unit decrease	Illumina [265780]	N
991	chr5	53300661	53300662	rs4311394	20011104	Richards JB	2009-12-05	PLoS Genet	A genome-wide association study reveals variants in ARL15 that influence adiponectin levels.	Adiponectin levels	8,531 European ancestry individuals	6,202 European ancestry individuals	5q11.2	ARL15	rs4311394-G	0.41	3E-8		0.96	[NR] ug/ml increase	Affymetrix, Illumina [~ 2200000] (imputed)	N
991	chr5	53301206	53301207	rs16881971	30670697	Kilpelainen TO	2019-01-22	Nat Commun	Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity.	Triglycerides x physical activity interaction (2df test)	7,294 African American inactive individuals, 12,832 African American active individuals, 1,352 Asian ancestry inactive individuals, 3,049 Asian ancestry active individuals, 20,622 European ancestry inactive individuals, 51,480 European ancestry active individuals, 2,166 Hispanic or Latin American inactive individuals, 3,486 Hispanic or Latin American active individuals	580 African American inactive individuals, 1,540 African American active individuals, 1,217 South African Black ancestry inactive individuals, 389 South African Black ancestry active individuals, 765 East Asian ancestry inactive individuals, 1,814 East Asian ancestry active individuals,  724 South Asian ancestry inactive individuals, 1,424 South Asian ancestry active individuals, 32,456 European ancestry inactive individuals, 49,510 European ancestry active individuals, 2,619 Hispanic inactive individuals, 8,803 Hispanic active individuals	5q11.2	NR	rs16881971-T	0.7324	5E-11				Affymetrix, Illumina [at least 2500000] (imputed)	N
991	chr5	53301424	53301425	rs11738093	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	5q11.2	NR	rs11738093-A	0.748369	6E-24		0.0138992	[0.011-0.017] unit increase	Affymetrix [16585854] (imputed)	N
991	chr5	53301424	53301425	rs11738093	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	5q11.2	NR	rs11738093-A	0.748369	8E-14		0.0119245	[0.0087-0.0151] unit increase	Affymetrix [16585866] (imputed)	N
991	chr5	53302353	53302354	rs2448	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	5q11.2	NA	rs2448-T	0.7378	5E-15		0.0158	[0.012-0.02] unit increase	NR [~ 27400000] (imputed)	N
991	chr5	53302353	53302354	rs2448	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	5q11.2	NR	rs2448-T	0.7378	5E-15		0.0158	[0.012-0.02] unit increase	NR [~ 27400000] (imputed)	N
991	chr5	53302619	53302620	rs12654393	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	5q11.2	NR	rs12654393-G	NR	4E-8		0.023	unit decrease	Affymetrix [at least 7091467] (imputed)	N
991	chr5	53302619	53302620	rs12654393	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	5q11.2	NR	rs12654393-G	0.746	7E-8	(EA)	0.026	unit decrease	Affymetrix [at least 7091467] (imputed)	N
991	chr5	53302619	53302620	rs12654393	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	5q11.2	NR	rs12654393-G	NR	2E-6		0.019	unit increase	Affymetrix [at least 7091467] (imputed)	N
991	chr5	53303594	53303595	rs6876198	34951656	Downie CG	2021-12-24	Diabetologia	Multi-ethnic GWAS and fine-mapping of glycaemic traits identify novel loci in the PAGE Study.	Glycated haemoglobin HbA1c levels adjusted for BMI	9,228 European ancestry individuals	NA	5q11.2		rs6876198-T	0.2512	2E-7		0.0615	[0.039-0.084] unit decrease	Affymetrix, Illumina [23060038] (imputed)	N
991	chr5	53303594	53303595	rs6876198	34951656	Downie CG	2021-12-24	Diabetologia	Multi-ethnic GWAS and fine-mapping of glycaemic traits identify novel loci in the PAGE Study.	Fasting insulin adjusted for BMI	48,395 European ancestry, African American or Afro-Caribbean, Hispanic or Latin American, Asian ancestry, Other ancestry, Native American ancestry individuals	NA	5q11.2		rs6876198-T	0.2844	4E-9		0.0427	[0.028-0.057] unit decrease	Affymetrix, Illumina [28462191] (imputed)	N
991	chr5	53304178	53304179	rs3776712	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	5q11.2	ARL15	rs3776712-T	0.694	2E-8		0.0017	[0.0011-0.0023] unit decrease	Affymetrix [NR] (imputed)	N
991	chr5	53304990	53304991	rs80138475	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	5q11.2	NR	rs80138475-T	NR	3E-17		0.032	[0.025-0.039] unit decrease	Affymetrix [9000000] (imputed)	N
991	chr5	53304990	53304991	rs80138475	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	5q11.2	ARL15	rs80138475-?	NR	5E-9		0.0243	[0.017-0.032] unit increase	Affymetrix [5701386] (imputed)	N
991	chr5	53306689	53306690	rs12186509	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	5q11.2	ARL15	rs12186509-T	0.7424	4E-11	(EA)	0.0027	[0.0019-0.0035] unit decrease	Affymetrix [NR] (imputed)	N
991	chr5	53308654	53308655	rs11296991	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in non-diabetics	152,624 European ancestry individuals, 36,369 African American individuals	NA	5q11.2	ARL15	rs11296991-CT	0.696	6E-9		0.347	[0.23-0.46] unit decrease	Affymetrix [NR] (imputed)	N
991	chr5	53308654	53308655	rs11296991	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	5q11.2	ARL15	rs11296991-?	0.307	2E-15		0.0243	[0.018-0.03] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
991	chr5	53310138	53310139	rs7735249	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	5q11.2		rs7735249-G	NR	9E-13		0.0264	[0.019-0.034] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
991	chr5	53310138	53310139	rs7735249	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	5q11.2		rs7735249-G	NR	5E-12		0.0252	[0.018-0.032] unit decrease	Affymetrix, Illumina [20538307] (imputed)	N
991	chr5	53310138	53310139	rs7735249	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	5q11.2	NR	rs7735249-C	0.887265	2E-8		0.0171391	[0.011-0.023] unit decrease	Affymetrix [15000001]	N
991	chr5	53310138	53310139	rs7735249	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	5q11.2	ARL15	rs7735249-C	0.887233	2E-17		0.026895	[0.021-0.033] unit decrease	Affymetrix [NR] (imputed)	N
991	chr5	53310138	53310139	rs7735249	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	5q11.2	NR	rs7735249-C	0.887157	2E-9		0.0284808	[0.019-0.038] unit increase	Affymetrix [16577313] (imputed)	N
991	chr5	53310138	53310139	rs7735249	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	5q11.2	NR	rs7735249-C	0.887003	4E-46		0.0185896	[0.016-0.021] unit increase	Affymetrix [16582909] (imputed)	N
991	chr5	53310138	53310139	rs7735249	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	5q11.2	NR	rs7735249-C	0.887181	5E-31		0.0198982	[0.016-0.023] unit increase	Affymetrix [16582621] (imputed)	N
991	chr5	53310138	53310139	rs7735249	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	5q11.2	NR	rs7735249-C	0.887003	4E-30		0.0168411	[0.014-0.02] unit increase	Affymetrix [16582965] (imputed)	N
991	chr5	53310138	53310139	rs7735249	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	5q11.2	NR	rs7735249-C	0.887181	2E-21		0.0175064	[0.014-0.021] unit increase	Affymetrix [16582614] (imputed)	N
991	chr5	53310138	53310139	rs7735249	26831199	Pattaro C	2016-01-21	Nat Commun	Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function.	Glomerular filtration rate (creatinine)	133,413 European ancestry individuals	42,166 European ancestry individuals, up to 16,471 African ancestry individuals, up to 42,296 Asian ancestry individuals	5q11.2	ARL15	rs7735249-C	0.92	2E-7	(EA)	0.0079	[0.005-0.0108] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
991	chr5	53311501	53311502	rs255758	23918589	Negi S	2013-12-01	Arthritis Rheum	A genome-wide association study reveals ARL15, a novel non-HLA susceptibility gene for rheumatoid arthritis in North Indians.	Rheumatoid arthritis	706 North Indian ancestry cases, 761 North Indian ancestry controls	927 North Indian ancestry cases, 1,148 North Indian ancestry controls	5q11.2	ARL15	rs255758-C	0.18	7E-6		1.42	[1.22-1.66]	Illumina [559348]	N
991	chr5	53319131	53319131	rs554530695	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	5q11.2		rs554530695-TG	NR	2E-16		0.0181	[0.014-0.022] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
991	chr5	53319516	53319517	rs255751	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	5q11.2	NR	rs255751-T	0.7	3E-20		0.0182	[0.014-0.022] unit increase	NR [NR]	N
991	chr5	53325480	53325481	rs40480	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals, 6,795 African American individuals, 6,324 East Asian ancestry individuals, 2,335 South Asian ancestry individuals, 1,442 Hispanic individuals	NA	5q11.2	ARL15	rs40480-C	NR	1E-10		0.0132	[0.0091-0.0173] unit decrease	Affymetrix, Illumina [8034757] (imputed)	N
991	chr5	53327570	53327571	rs31226	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Follistatin levels	21,758 European ancestry individuals	9,173 individuals	5q11.2		rs31226-T	0.4	3E-44		0.1238	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
991	chr5	53343528	53343529	rs6874524	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	5q11.2		rs6874524-?	NR	9E-10				NR [~ 8900000] (imputed)	N
991	chr5	53343528	53343529	rs6874524	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	5q11.2	NR	rs6874524-T	0.78	2E-9		0.013	[0.0087-0.0173] unit increase	Affymetrix [2446094] (imputed)	N
991	chr5	53343528	53343529	rs6874524	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	5q11.2	NR	rs6874524-T	0.78	5E-8				Affymetrix [2446094] (imputed)	N
991	chr5	53344351	53344352	rs58203904	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Coffee consumption	335,909 European ancestry individuals	39,924 European ancestry individuals	5q11.2	ARL15	rs58203904-C	0.7954	3E-7		0.0094	[0.0059-0.0129] unit increase	Affymetrix [~ 7740000] (imputed)	N
992	chr5	53378449	53378450	rs156380	30837465	Wittemans LBL	2019-03-05	Nat Commun	Assessing the causal association of glycine with risk of cardio-metabolic diseases.	Glycine levels	80,003 European ancestry individuals	NA	5q11.2	ARL15	rs156380-C	0.807	5E-8		0.031	[0.017-0.045] unit increase	Affymetrix, Illumina [NR] (imputed)	N
992	chr5	53379986	53379987	rs274369	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	5q11.2	NR	rs274369-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
992	chr5	53379986	53379987	rs274369	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	5q11.2	NR	rs274369-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
992	chr5	53380554	53380555	rs273218	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NA	5q11.2	intergenic	rs273218-?	0.8	2E-6		1.06	[1.04-1.1]	Affymetrix, Illumina [~ 2300000] (imputed)	N
992	chr5	53383058	53383059	rs35748083	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	5q11.2	ARL15	rs35748083-T	0.5682	1E-24		0.0197	[0.016-0.023] unit decrease	Affymetrix [18391927] (imputed)	N
992	chr5	53388647	53388648	rs17266519	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	5q11.2	ARL15	rs17266519-G	0.145839	2E-10		0.020481229	[0.014-0.027] unit increase	Affymetrix [93095623] (imputed)	N
992	chr5	53405313	53405314	rs116006942	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	5q11.2	ARL15	rs116006942-G	0.939201	1E-13		0.0300143	[0.022-0.038] unit increase	Affymetrix [NR] (imputed)	N
992	chr5	53405313	53405314	rs116006942	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	5q11.2	ARL15	rs116006942-G	0.939215	7E-12		0.0284678	[0.02-0.037] unit increase	Affymetrix [NR] (imputed)	N
992	chr5	53409933	53409937	rs370129747	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	5q11.2		rs370129747-T	NR	2E-10		0.0306	[0.021-0.04] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
992	chr5	53412619	53412620	rs279744	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	5q11.2	ARL15	rs279744-C	0.6909	3E-8		1.04	[1.03-1.05]	Affymetrix, Illumina [~ 27000000] (imputed)	N
992	chr5	53442724	53442725	rs35006	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	5q11.2	ARL15	rs35006-C	0.697	2E-7		0.035	[0.021-0.049] unit increase	Affymetrix [7947838] (imputed)	N
992	chr5	53444497	53444498	rs2441026	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	5q11.2	ARL15	rs2441026-T	0.4625	8E-14		0.0177	[0.013-0.022] unit increase	Affymetrix [19819130] (imputed)	N
992	chr5	53444497	53444498	rs2441026	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	5q11.2	ARL15	rs2441026-T	0.4625	1E-12		0.0167	[0.012-0.021] unit increase	Affymetrix [19819130] (imputed)	N
992	chr5	53444497	53444498	rs2441026	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FVC)	48,943 European ancestry individuals.	57,176 European ancestry individuals, 38,199 individuals.	5q11.2	ARL15	rs2441026-T	0.4627	3E-12		0.027	[0.019-0.035] unit increase	Affymetrix [27624732] (imputed)	N
992	chr5	53458922	53458923	rs278064	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	5q11.2		rs278064-?	NR	4E-14				NR [~ 8900000] (imputed)	N
992	chr5	53460139	53460140	rs278062	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	5q11.2	NR	rs278062-C	0.38	8E-6		1.07	[1.03-1.11]	Illumina [8468885] (imputed)	N
992	chr5	53460838	53460839	rs169382	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	5q11.2	ARL15	rs169382-T	0.377279	1E-10		0.015066866	[0.01-0.02] unit increase	Affymetrix [93095623] (imputed)	N
993	chr5	53487292	53487293	rs66704626	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	5q11.2		rs66704626-?	NR	8E-16				NR [~ 8900000] (imputed)	N
993	chr5	53489781	53489782	rs28701873	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	5q11.2	NR	rs28701873-A	0.2774	2E-8				NR [9056863] (imputed)	N
993	chr5	53502901	53502902	rs16882447	29212900	Li C	2017-12-06	Circ Cardiovasc Genet	Genome-Wide Gene-Potassium Interaction Analyses on Blood Pressure: The GenSalt Study (Genetic Epidemiology Network of Salt Sensitivity).	Systolic blood pressure (dietary potassium intake interaction)	1,876 Han Chinese ancestry individuals	775 Chinese ancestry individuals	5q11.2	ARL15, HSPB3	rs16882447-A	0.010	1E-9		0.83	[0.54-1.12] unit decrease	Affymetrix [2216774] (imputed)	N
993	chr5	53512383	53512384	rs33284	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	5q11.2	ARL15	rs33284-A	0.0734	3E-9	(Cer d18:1/16:0)	0.1321	[0.088-0.176] unit increase	Illumina [~ 47000000] (imputed)	N
993	chr5	53555168	53555169	rs13156373	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	5q11.2	NR	rs13156373-C	NR	4E-9		0.0285	[0.019-0.038] unit decrease	Affymetrix [9000000] (imputed)	N
993	chr5	53555168	53555169	rs13156373	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	5q11.2	NR	rs13156373-C	NR	4E-9		0.0284	[0.019-0.038] unit increase	Affymetrix [9000000] (imputed)	N
993	chr5	53556081	53556082	rs13184316	26030696	Cho MH	2015-06-01	Am J Respir Crit Care Med	A Genome-Wide Association Study of Emphysema and Airway Quantitative Imaging Phenotypes.	Emphysema imaging phenotypes	5,385 European ancestry chronic obstructive pulmonary disease cases, 901 African American chronic obstructive pulmonary disease cases, 3,613 European ancestry controls, 2,132 African American controls	NA	5q11.2	ARL15	rs13184316-A	NR	8E-7	(%LAA-950, Cases)	0.07	[-0.12600-0.26600] unit increase	Illumina [7600000] (imputed)	N
993	chr5	53580424	53580425	rs35929	29093028	Corre T	2017-11-01	J Am Soc Nephrol	Genome-Wide Meta-Analysis Unravels Interactions between Magnesium Homeostasis and Metabolic Phenotypes.	Urinary magnesium-to-creatinine ratio	up to 5,810 European ancestry individuals, up to 1,541 Val Borbera (founder/genetic isolate) individuals, up to 281 Carlantino (founder/genetic isolate) individuals,  up to 889 Korcula (founder/genetic isolate) individuals, up to 489 Split (founder/genetic isolate) individuals, up to 195 Vis (founder/genetic isolate) individuals	NA	5q11.2	ARL15	rs35929-A	0.21	2E-11		0.1227	[-0.23598-0.48138] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
993	chr5	53581723	53581724	rs35930	31993563	Ware EB	2019-11-22	Mayo Clin Proc Innov Qual Outcomes	Genome-wide Association Study of 24-Hour Urinary Excretion of Calcium, Magnesium, and Uric Acid.	Urinary magnesium excretion	6,462 European ancestry individuals	NA	5q11.2	ARL15	rs35930-A	0.2	5E-6		3.84	NR mg decrease	NR [NR] (imputed)	N
993	chr5	53585869	53585870	rs17513184	29682794	Szekely E	2018-04-22	Genet Epidemiol	Genetic associations with childhood brain growth, defined in two longitudinal cohorts.	Right lateral prefrontal cortical growth	581 European ancestry individuals, 31 African American individuals, 8 Asian American individuals, 15 admixed individuals, 80 other ancestries individuals	NA	5q11.2	ARL15	rs17513184-?	NR	5E-6				Illumina [at least 653030]	N
993	chr5	53592360	53592361	rs35951	24962325	Kapoor M	2014-06-11	Drug Alcohol Depend	Genome-wide survival analysis of age at onset of alcohol dependence in extended high-risk COGA families.	Alcohol dependence (age at onset)	685 European ancestry cases, 1,103 European ancestry controls from 118 families	NA	5q11.2	ARL15	rs35951-G	0.14	1E-8		1.43	[1.31-1.55]	Illumina [4058415] (imputed)	N
993	chr5	53598708	53598709	rs16882647	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	5q11.2	NR	rs16882647-G	NR	1E-9		0.0282	[0.019-0.037] unit increase	Affymetrix [9000000] (imputed)	N
993	chr5	53598708	53598709	rs16882647	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	5q11.2	NR	rs16882647-G	NR	2E-10		0.0296	[0.021-0.039] unit decrease	Affymetrix [9000000] (imputed)	N
994	chr5	53609809	53609810	rs1348693	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	5q11.2		rs1348693-?	NR	1E-18				NR [~ 8900000] (imputed)	N
994	chr5	53617863	53617864	rs35934	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	5q11.2	LINC01033	rs35934-T	0.844917	1E-36		0.04001222	[0.034-0.046] unit decrease	Affymetrix [93095623] (imputed)	N
994	chr5	53617863	53617864	rs35934	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	5q11.2	LINC01033	rs35934-T	0.84492	2E-39		0.041527607	[0.035-0.048] unit decrease	Affymetrix [93095623] (imputed)	N
994	chr5	53617863	53617864	rs35934	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	5q11.2	LINC01033	rs35934-T	0.844972	4E-22		0.029951863	[0.024-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
994	chr5	53617863	53617864	rs35934	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	5q11.2	LINC01033	rs35934-T	0.844931	6E-33		0.037443556	[0.031-0.044] unit decrease	Affymetrix [93095623] (imputed)	N
994	chr5	53617863	53617864	rs35934	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	5q11.2	LINC01033	rs35934-T	0.844929	4E-35		0.038694866	[0.033-0.045] unit decrease	Affymetrix [93095623] (imputed)	N
994	chr5	53641691	53641692	rs3096150	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	5q11.2	NR	rs3096150-A	0.845199	2E-22		0.025358	[0.02-0.03] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
994	chr5	53643705	53643706	rs10068787	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	5q11.2	LINC01033	rs10068787-C	0.153153	4E-25		0.03263273	[0.026-0.039] unit increase	Affymetrix [93095623] (imputed)	N
994	chr5	53643705	53643706	rs10068787	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	5q11.2	LINC01033	rs10068787-C	0.153177	6E-29		0.03523459	[0.029-0.041] unit increase	Affymetrix [93095623] (imputed)	N
994	chr5	53643705	53643706	rs10068787	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	5q11.2	LINC01033	rs10068787-C	0.153186	1E-23		0.031358667	[0.025-0.038] unit increase	Affymetrix [93095623] (imputed)	N
994	chr5	53643705	53643706	rs10068787	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	5q11.2	LINC01033	rs10068787-C	0.153201	2E-25		0.032679427	[0.027-0.039] unit increase	Affymetrix [93095623] (imputed)	N
994	chr5	53647156	53647157	rs7710385	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	5q11.2	LINC01033	rs7710385-A	0.1517	2E-12		0.03543344	[0.026-0.045] unit increase	Affymetrix [~ 2500000] (imputed)	N
994	chr5	53647156	53647157	rs7710385	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	5q11.2	LINC01033	rs7710385-A	0.1517	4E-13		0.03647461	[0.027-0.046] unit increase	Affymetrix [~ 2500000] (imputed)	N
994	chr5	53655623	53655624	rs3111637	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	5q11.2	LINC01033	rs3111637-C	0.1543	2E-12		0.03506849	[0.025-0.045] unit increase	Affymetrix [~ 2500000] (imputed)	N
994	chr5	53656604	53656605	rs2407513	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	5q11.2	LINC01033	rs2407513-C	0.1549	5E-11		0.03274671	[0.023-0.043] unit increase	Affymetrix [~ 2500000] (imputed)	N
994	chr5	53667324	53667325	rs2113006	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q11.2	NR	rs2113006-T	0.838425	3E-20				Affymetrix, Illumina [22063850] (imputed)	N
994	chr5	53677180	53677181	rs62355667	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	5q11.2	LINC01033	rs62355667-A	0.1526	4E-11		0.03302243	[0.023-0.043] unit increase	Affymetrix [~ 2500000] (imputed)	N
994	chr5	53677180	53677181	rs62355667	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	5q11.2	LINC01033	rs62355667-A	0.1526	1E-11		0.03402561	[0.024-0.044] unit increase	Affymetrix [~ 2500000] (imputed)	N
994	chr5	53677731	53677732	rs60986682	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	5q11.2	LINC01033	rs60986682-C	0.153914	6E-14		0.02339265	[0.017-0.03] unit increase	Affymetrix [93095623] (imputed)	N
994	chr5	53702583	53702584	rs6877034	30954325	Kamboh MI	2019-03-11	Neurobiol Aging	Population-based genome-wide association study of cognitive decline in older adults free of dementia: identification of a novel locus for the attention domain.	Age-related cognitive decline (language) (slope of z-scores)	1,145 European ancestry individuals	NA	5q11.2	ARL15, HSPB3	rs6877034-C	0.54	1E-6		0.22	unit increase	Illumina [5600000] (imputed)	N
994	chr5	53730295	53730296	rs4073024	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5q11.2	SNAG1	rs4073024-?	NR	9E-6	(guanosine diphosphate)	0.19982484	[0.11-0.29] unit increase	Affymetrix [at least 2500000] (imputed)	N
995	chr5	53747306	53747307	rs4282275	35047858	Polikowsky HG	2021-12-02	HGG Adv	Population-based genetic effects for developmental stuttering.	Developmental stuttering	250 African ancestry cases, 1,910 African ancestry controls, 160 Hispanic ancestry cases, 1,186 Hispanic ancestry controls, 42 East Asian ancestry cases, 113 East Asian ancestry controls, 1,565 European ancestry cases, 10,434 European ancestry controls, 44 South Asian ancestry cases, 143 South Asian ancestry controls, 4 Native American ancestry cases, 32 Native American ancestry controls, 44 Asian ancestry cases, 404 Asian ancestry controls, 21 cases, 109 controls	NA	5q11.2		rs4282275-A	0.1347	2E-6		4.783	z score increase	Illumina [7275796] (imputed)	N
995	chr5	53751000	53751001	rs192079295	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	5q11.2	NR	rs192079295-?	NR	5E-9				Illumina [7760689] (imputed)	N
995	chr5	53804996	53804997	rs80259092	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q11.2	NR	rs80259092-A	0.01916	2E-8	(GLUL)	0.1962	NR unit increase	Illumina [1671387] (imputed)	N
996	chr5	53875981	53875982	rs1122401	24665060	Argos M	2014-03-24	J Med Genet	Genome-wide association study of smoking behaviours among Bangladeshi adults.	Smoking initiation	754 Bangladeshi ancestry never smoker males, 2,565 Bangladeshi ancestry never smoker females, 1,837 Bangladeshi ancestry ever smoker males, 198 Bangladeshi ancestry ever smoker females	NA	5q11.2	NR	rs1122401-?		4E-6	(males)			Illumina [1211988] (imputed)	N
996	chr5	53886158	53886159	rs2565010	32399468	Melhuish Beaupre LM	2020-01-08	Mol Neuropsychiatry	Genome-Wide Association Study of Sleep Disturbances in Depressive Disorders.	Sleep disturbance (changes in sleep) in depressive disorders	36 European ancestry cases, 329 European ancestry controls	NA	5q11.2		rs2565010-?	NR	1E-6		0.2156		Illumina [5932083] (imputed)	N
996	chr5	53902338	53902339	rs2548621	22542470	Ovsyannikova IG	2012-04-25	Vaccine	Genome-wide association study of antibody response to smallpox vaccine.	Immune response to smallpox vaccine (IL-6)	217 African American individuals, 580 European ancestry individuals, 217 Hispanic individuals	NA	5q11.2	SNX18	rs2548621-?		9E-7	(Hispanic)			Illumina [NR]	N
997	chr5	54064329	54064330	rs4532315	31324766	Adeyemo AA	2019-07-19	Nat Commun	ZRANB3 is an African-specific type 2 diabetes locus associated with beta-cell mass and insulin response.	Type 2 diabetes	2,342 Sub-Saharan African ancestry cases, 2,889 Sub-Saharan African ancestry controls, 8,599 African American individuals	NA	5q11.2	intergenic	rs4532315-?	NR	1E-8		5.734	NR z score decrease	Affymetrix, Illumina [~ 18000000] (imputed)	N
997	chr5	54117442	54117443	rs4865875	26632684	Dong J	2015-11-01	Medicine (Baltimore)	Genome-wide Meta-analysis on the Sense of Smell Among US Older Adults.	Sense of smell	6,252 European ancestry individuals	NA	5q11.2	ESM1	rs4865875-T	0.09	8E-6	(Ajusted for ApoE)	0.04	[0.02-0.06] ln(smell score+1) increase	Affymetrix, Illumina [2543887] (imputed)	N
997	chr5	54125337	54125338	rs10053769	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	5q11.2	RP11-45H22.3	rs10053769-A	0.0145558006376728	2E-6	(G_unclassified_P_Firmicutes_HB)	1.31435	[0.77-1.86] unit decrease	Illumina [7711310] (imputed)	N
998	chr5	54164370	54164371	rs10940431	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	5q11.2		rs10940431-?	NR	2E-8				NR [~ 8900000] (imputed)	N
998	chr5	54202038	54202039	rs4865884	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Endothelial cell-specific molecule 1 levels	21,758 European ancestry individuals	9,173 individuals	5q11.2		rs4865884-A	0.75	2E-15		0.1231	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
998	chr5	54259648	54259649	rs72764135	33831438	Williams JE	2021-04-05	Genomics	Key genetic variants associated with variation of milk oligosaccharides from diverse human populations.	Human milk oligosaccharide concentration (lacto-N-fucopentaose III) in non-secretors	90 European, Sub-Saharan African, Hispanic or unknown ancestry individuals	NA	5q11.2		rs72764135-?	NR	1E-10				Illumina [1128286]	N
999	chr5	54265531	54265532	rs1023674	33539483	Li Z	2021-02-04	PLoS One	Bivariate genome-wide association study (GWAS) of body mass index and blood pressure phenotypes in northern Chinese twins.	Systolic blood pressure and diastolic blood pressure (bivariate analysis)	274 Chinese ancestry dizygotic twins	NA	5q11.2	ESM1	rs1023674-?	NR	7E-6				Illumina [7401356] (imputed)	N
999	chr5	54277825	54277826	rs142604597	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial squamous cell lung carcinoma	367 European ancestry cases, 31,563 European ancestry controls	NA	5q11.2	ESM1	rs142604597-T	0.02	1E-7		3.92	[2.37-6.51]	Illumina [7959153] (imputed)	N
999	chr5	54309710	54309711	rs11956997	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	5q11.2	GZMK	rs11956997-A	0.55546875	4E-7	(GZMK, 9545_156_3)	0.12417901	[0.076-0.172] unit increase	Illumina [> 1000000] (imputed)	N
999	chr5	54316629	54316630	rs150548770	28334935	Raffield LM	2017-05-15	Hum Mol Genet	Genome-wide association study of iron traits and relation to diabetes in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL): potential genomic intersection of iron and glucose regulation?	Iron status biomarkers (transferrin saturation)	12,589 Hispanic/Latino individuals	NA	5q11.2	LOC102467081	rs150548770-T	NR	1E-7		0.508	[0.32-0.7] unit increase	Illumina [27700000] (imputed)	N
999	chr5	54316629	54316630	rs150548770	28334935	Raffield LM	2017-05-15	Hum Mol Genet	Genome-wide association study of iron traits and relation to diabetes in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL): potential genomic intersection of iron and glucose regulation?	Iron status biomarkers (iron levels)	12,580 Hispanic/Latino individuals	NA	5q11.2	LOC102467081	rs150548770-T	NR	8E-7		0.772	[0.47-1.08] unit increase	Illumina [27700000] (imputed)	N
999	chr5	54317899	54317900	rs6891823	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GZMK	5,366 Icelandic ancestry individuals	NA	5q11.2		rs6891823-C	0.4474	5E-19		0.164123	[0.13-0.2] unit decrease	Illumina [7506463] (imputed)	N
999	chr5	54324919	54324920	rs4865911	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Endothelial cell-specific molecule 1 levels	21,758 European ancestry individuals	9,173 individuals	5q11.2		rs4865911-A	0.67	1E-13		0.1044	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1000	chr5	54476682	54476683	rs10471939	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	5q11.2		rs10471939-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1000	chr5	54492621	54492622	rs431699	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	5q11.2	NR	rs431699-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
1000	chr5	54519877	54519878	rs334878	31212010	Cabana-Dominguez J	2019-06-15	Prog Neuropsychopharmacol Biol Psychiatry	Genome-wide association meta-analysis of cocaine dependence: Shared genetics with comorbid conditions.	Cocaine dependence	2,085 European ancestry cases, 4,293 European ancestry controls	NA	5q11.2	ESM1, CDC20B, GPX8, MCIDAS, CCNO, DHX29, SKIV2L2, PLPP1, DDX4	rs334878-A	NR	8E-6		0.2703	[0.15-0.39] unit decrease	Illumina [9290362] (imputed)	N
1003	chr5	54795516	54795516	rs11398788	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	5q11.2		rs11398788-?	NR	4E-23		0.033151	[0.026-0.04] unit decrease	Affymetrix [20259828] (imputed)	N
1003	chr5	54796048	54796049	rs10057211	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	5q11.2	PLPP1	rs10057211-A	0.907851	1E-21		0.0305363	[0.024-0.037] unit decrease	NR [13737936] (imputed)	N
1003	chr5	54807075	54807076	rs10069504	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	5q11.2		rs10069504-?	NR	2E-24				NR [~ 8900000] (imputed)	N
1003	chr5	54810465	54810466	rs75567174	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	5q11.2		rs75567174-?	NR	1E-24		0.0363671	[0.029-0.043] unit decrease	Affymetrix [20259828] (imputed)	N
1003	chr5	54810846	54810847	rs4865610	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	5q11.2	PLPP1	rs4865610-C	0.10323	8E-17		0.0254519	[0.019-0.031] unit decrease	NR [13737936] (imputed)	N
1003	chr5	54844571	54844572	rs28744551	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	5q11.2		rs28744551-?	NR	2E-24		0.0362217	[0.029-0.043] unit decrease	Affymetrix [20259828] (imputed)	N
1003	chr5	54844571	54844572	rs28744551	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	5q11.2	PLPP1	rs28744551-C	0.905632	5E-8	(women)	0.0422315	[0.027-0.058] unit decrease	NR [17166351] (imputed)	N
1003	chr5	54844571	54844572	rs28744551	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	5q11.2	PLPP1	rs28744551-C	0.905541	1E-11		0.0389604	[0.028-0.05] unit decrease	NR [17166351] (imputed)	N
1003	chr5	54849096	54849097	rs11748538	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	5q11.2	AK4P2	rs11748538-T	NR	1E-8		0.0191067	[0.013-0.026] unit increase	Affymetrix [319769] (imputed)	N
1003	chr5	54849701	54849702	rs10805480	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	5q11.2	AK4P2	rs10805480-G	NR	3E-9		0.0199488	[0.013-0.027] unit increase	Affymetrix [319769] (imputed)	N
1003	chr5	54850239	54850240	rs7725250	29532581	Hallfors J	2018-03-13	Addict Biol	Genome-wide association study in Finnish twins highlights the connection between nicotine addiction and neurotrophin signaling pathway.	Nicotine dependence symptom count	1,715 Finnish ancestry ever smoker individuals from 739 families	NA	5q11.2	NR	rs7725250-A	0.131	6E-6		0.4	[0.22-0.58] unit increase	Illumina [9469131] (imputed)	N
1003	chr5	54863189	54863190	rs3857286	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	5q11.2	NR	rs3857286-T	NR	3E-9		0.0159	[0.011-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
1003	chr5	54863947	54863947	rs59576023	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	5q11.2	NR	rs59576023-I	0.686094	1E-12		0.015645	[0.011-0.02] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1003	chr5	54864016	54864017	rs2408014	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	5q11.2	NR	rs2408014-T	0.68133	4E-13		0.015385	[0.011-0.02] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1003	chr5	54868705	54868705	rs59642354	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	5q11.2	NR	rs59642354-CT	0.632101	1E-9		0.014320773	[0.0097-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
1003	chr5	54868705	54868705	rs59642354	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	5q11.2		rs59642354-CT	0.632084	3E-11		0.015717905	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1003	chr5	54868795	54868796	rs59761269	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	5q11.2		rs59761269-G	0.338743	4E-15		0.018465083	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1003	chr5	54871228	54871229	rs34568892	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	5q11.2		rs34568892-T	NR	2E-9		0.0128	[0.0087-0.0169] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
1003	chr5	54871228	54871229	rs34568892	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q11.2	NR	rs34568892-T	0.660119	1E-10				Affymetrix, Illumina [24588908] (imputed)	N
1003	chr5	54871228	54871229	rs34568892	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q11.2	NR	rs34568892-T	0.667269	5E-11				Affymetrix, Illumina [23472807] (imputed)	N
1003	chr5	54876618	54876619	rs4482863	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	5q11.2	NR	rs4482863-C	0.661376	6E-12		0.014021	[0.01-0.018] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1003	chr5	54876984	54876985	rs10068807	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	5q11.2	NR	rs10068807-?	NR	2E-9		0.14246	[0.096-0.189] unit decrease	Affymetrix [7794483] (imputed)	N
1003	chr5	54880700	54880701	rs10940474	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	5q11.2		rs10940474-T	0.659902	7E-11		0.015525879	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1003	chr5	54880700	54880701	rs10940474	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	5q11.2		rs10940474-T	0.659885	3E-9		0.014082235	[0.0094-0.0187] unit decrease	Affymetrix [93095623] (imputed)	N
1003	chr5	54882504	54882505	rs4865956	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	5q11.2	intergenic	rs4865956-A	0.6965	4E-36		0.0258	[0.022-0.03] unit decrease	Affymetrix [18391927] (imputed)	N
1003	chr5	54882504	54882505	rs4865956	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	5q11.2	NR	rs4865956-?	NR	3E-22				Affymetrix [~ 8270000] (imputed)	N
1003	chr5	54882504	54882505	rs4865956	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5q11.2		rs4865956-?	NR	9E-87				NR [~ 8900000] (imputed)	N
1003	chr5	54885232	54885232	rs199858280	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	5q11.2	SLC38A9	rs199858280-C	NR	5E-9		0.0256822	[0.017-0.034] unit decrease	Affymetrix [321788] (imputed)	N
1003	chr5	54886680	54886681	rs1983189	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	5q11.2	SLC38A9	rs1983189-A	NR	4E-17		0.0256815	[0.02-0.032] unit increase	Affymetrix [319769] (imputed)	N
1003	chr5	54886680	54886681	rs1983189	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	5q11.2	NR	rs1983189-A	0.3161	2E-18		0.017	[0.013-0.021] unit increase	NR [~ 27400000] (imputed)	N
1003	chr5	54887865	54887866	rs112616580	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	5q11.2	SLC38A9	rs112616580-A	NR	9E-12		0.0259	[0.018-0.033] unit increase	Affymetrix [321114] (imputed)	N
1003	chr5	54889958	54889959	rs2408017	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	5q11.2	SLC38A9	rs2408017-A	NR	2E-8		0.0229625	[0.015-0.031] unit increase	Affymetrix [319769] (imputed)	N
1003	chr5	54890801	54890802	rs7721054	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	5q11.2	SLC38A9	rs7721054-T	NR	2E-15		0.0246549	[0.019-0.031] unit increase	Affymetrix [319769] (imputed)	N
1003	chr5	54890801	54890802	rs7721054	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	5q11.2	SLC38A9	rs7721054-T	NR	8E-17		0.0259495	[0.02-0.032] unit increase	Affymetrix [321114] (imputed)	N
1003	chr5	54890801	54890802	rs7721054	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	5q11.2	SLC38A9	rs7721054-T	NR	6E-9		0.0181771	[0.012-0.024] unit increase	Affymetrix [321169] (imputed)	N
1003	chr5	54890801	54890802	rs7721054	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	5q11.2	NR	rs7721054-?	NR	3E-17				Affymetrix [~ 8270000] (imputed)	N
1003	chr5	54890801	54890802	rs7721054	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	5q11.2		rs7721054-?	NR	4E-14				NR [~ 8900000] (imputed)	N
1003	chr5	54898143	54898143	rs34394920	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	5q11.2	SLC38A9	rs34394920-CTTAT	NR	3E-9		0.0245915	[0.016-0.033] unit increase	Affymetrix [321114] (imputed)	N
1003	chr5	54901641	54901642	rs13162062	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	5q11.2		rs13162062-G	0.583642	2E-19		0.0183902	[0.014-0.022] unit decrease	Illumina [13479295] (imputed)	N
1003	chr5	54901641	54901642	rs13162062	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	5q11.2	PPAP2A, SLC38A9	rs13162062-?	NR	3E-21		0.027395174	[0.022-0.033] unit decrease	Illumina [27896057] (imputed)	N
1003	chr5	54903343	54903344	rs4391129	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	5q11.2		rs4391129-C	NR	4E-59		0.0219	[0.019-0.024] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1004	chr5	54930250	54930251	rs13156231	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q11.2	NR	rs13156231-G	0.66371	1E-11				Affymetrix, Illumina [24649327] (imputed)	N
1004	chr5	54944261	54944262	rs7704138	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	5q11.2	SLC38A9	rs7704138-T	0.47	3E-11		0.028	[0.016-0.04] unit decrease	Affymetrix, Illumina [2704730] (imputed)	N
1004	chr5	54955070	54955071	rs7716219	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	5q11.2	SLC38A9	rs7716219-T	0.307	7E-22		0.03	[0.024-0.036] unit increase	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
1004	chr5	54955707	54955708	rs4326104	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	5q11.2	SLC38A9	rs4326104-G	NR	8E-13		0.0223837	[0.016-0.029] unit decrease	Affymetrix [321788] (imputed)	N
1004	chr5	54956831	54956834	rs34994646	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	5q11.2	SLC38A9	rs34994646-A	0.1878	3E-6		0.0383	[0.022-0.054] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1004	chr5	54986774	54986775	rs6897117	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	5q11.2	NR	rs6897117-C	0.7055	2E-8		0.0234	[0.015-0.032] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1004	chr5	54992678	54992679	rs6864532	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	5q11.2	SLC38A9	rs6864532-G	NR	9E-9		0.0165856	[0.011-0.022] unit increase	Affymetrix [319769] (imputed)	N
1004	chr5	54992678	54992679	rs6864532	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	5q11.2	SLC38A9	rs6864532-G	NR	8E-10		0.0176917	[0.012-0.023] unit increase	Affymetrix [319769] (imputed)	N
1004	chr5	55001898	55001899	rs11958779	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	5q11.2	SLC38A9	rs11958779-A	0.7	2E-12		0.027	[NR] unit decrease	Affymetrix, Illumina [2834208] (imputed)	N
1004	chr5	55002822	55002823	rs67615608	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	5q11.2		rs67615608-?	NR	3E-12				NR [~ 8900000] (imputed)	N
1004	chr5	55003943	55003944	rs7736177	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	5q11.2	NR	rs7736177-A	0.6911	4E-8		0.0105	[0.0068-0.0142] unit decrease	NR [~ 27400000] (imputed)	N
1004	chr5	55009277	55009278	rs67820074	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	5q11.2	SLC38A9	rs67820074-A	0.955917	3E-14		0.0344123	[0.026-0.043] unit decrease	NR [13737936] (imputed)	N
1004	chr5	55009277	55009278	rs67820074	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	5q11.2		rs67820074-?	NR	4E-12		0.0351694	[0.025-0.045] unit decrease	Affymetrix [20259828] (imputed)	N
1004	chr5	55022037	55022038	rs3846512	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	5q11.2	SLC38A9	rs3846512-T	NR	2E-11		0.0192305	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
1004	chr5	55022037	55022038	rs3846512	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	5q11.2	SLC38A9	rs3846512-T	NR	2E-12		0.0202739	[0.015-0.026] unit increase	Affymetrix [319769] (imputed)	N
1004	chr5	55022037	55022038	rs3846512	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	5q11.2	SLC38A9	rs3846512-T	NR	2E-11		0.0193094	[0.014-0.025] unit increase	Affymetrix [321114] (imputed)	N
1005	chr5	55141512	55141513	rs2408175	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	5q11.2	NR	rs2408175-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
1006	chr5	55196022	55196023	rs1148039	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	5q11.2		rs1148039-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1006	chr5	55214853	55214854	rs161696	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	5q11.2		rs161696-C	NR	2E-8		0.0126	[0.0083-0.0169] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
1006	chr5	55236373	55236374	rs10471960	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	5q11.2	IL6ST	rs10471960-A	0.874375	3E-20	(IL6ST, 2620_4_2)	0.3280189	[0.26-0.4] unit decrease	Illumina [> 1000000] (imputed)	N
1006	chr5	55265007	55265009	rs33953318	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q11.2	NR	rs33953318-A	0.02091	2E-8	(IGHG2)	1.113	NR unit increase	Illumina [1671387] (imputed)	N
1006	chr5	55266511	55266512	rs7730934	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	5q11.2	IL6ST, CTD-2031P19.5, AC008914.1, CTD-2031P19.4, FLJ31104, snoU13	rs7730934-A	0.1082578	3E-15	(Interleukin-6 receptor subunit beta)	0.5605	[0.42-0.7] unit increase	Affymetrix [509946]	N
1006	chr5	55273525	55273526	rs9791086	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	5q11.2	NR	rs9791086-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
1006	chr5	55275805	55275807	rs199666144	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	5q11.2	IL6ST	rs199666144-C	0.013988	5E-10		0.059658952	[0.041-0.078] unit decrease	Affymetrix [93095623] (imputed)	N
1006	chr5	55278966	55278967	rs11574765	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5q11.2	IL6ST	rs11574765-G	0.116	1E-22	(Interleukin-6 receptor subunit beta, IL6ST.2620.4.2)	0.38	[0.3-0.46] unit increase	Affymetrix [10572788] (imputed)	N
1006	chr5	55288898	55288899	rs71624106	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5q11.2		rs71624106-?	NR	5E-11				NR [~ 8900000] (imputed)	N
1006	chr5	55295305	55295306	rs7726239	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL6ST	5,365 Icelandic ancestry individuals	NA	5q11.2		rs7726239-A	0.1266	1E-29		0.306842	[0.25-0.36] unit increase	Illumina [7506463] (imputed)	N
1007	chr5	55322894	55322895	rs17348299	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	5q11.2	IL6ST, ANKRD55	rs17348299-C	0.836804684351315	2E-6	(IGP69)	0.2129	[0.12-0.3] unit decrease	Illumina [~ 2500000] (imputed)	N
1007	chr5	55322894	55322895	rs17348299	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	5q11.2	IL6ST, ANKRD55	rs17348299-C	0.836731980863373	7E-11	(IGP53)	0.2916	[0.2-0.38] unit increase	Illumina [~ 2500000] (imputed)	N
1007	chr5	55322894	55322895	rs17348299	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	5q11.2	IL6ST, ANKRD55	rs17348299-C	0.836731980863373	3E-10	(IGP43)	0.2804	[0.19-0.37] unit decrease	Illumina [~ 2500000] (imputed)	N
1007	chr5	55322894	55322895	rs17348299	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	5q11.2	IL6ST, ANKRD55	rs17348299-C	0.836731980863373	2E-7	(IGP17)	0.2309	[0.14-0.32] unit increase	Illumina [~ 2500000] (imputed)	N
1007	chr5	55322894	55322895	rs17348299	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	5q11.2	IL6ST, ANKRD55	rs17348299-C	0.836731980863373	1E-10	(IGP57)	0.2872	[0.2-0.37] unit increase	Illumina [~ 2500000] (imputed)	N
1007	chr5	55322894	55322895	rs17348299	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	5q11.2	IL6ST, ANKRD55	rs17348299-C	0.836731980863373	1E-10	(IGP55)	0.2864	[0.2-0.37] unit decrease	Illumina [~ 2500000] (imputed)	N
1007	chr5	55322894	55322895	rs17348299	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	5q11.2	IL6ST, ANKRD55	rs17348299-C	0.836731980863373	1E-10	(IGP13)	0.2875	[0.2-0.38] unit increase	Illumina [~ 2500000] (imputed)	N
1007	chr5	55322894	55322895	rs17348299	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	5q11.2	IL6ST, ANKRD55	rs17348299-C	0.836669484361037	2E-6	(IGP74)	0.2132	[0.13-0.3] unit decrease	Illumina [~ 2500000] (imputed)	N
1007	chr5	55322894	55322895	rs17348299	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	5q11.2	IL6ST, ANKRD55	rs17348299-C	0.836660240071397	8E-6	(IGP56)	0.2001	[0.11-0.29] unit increase	Illumina [~ 2500000] (imputed)	N
1007	chr5	55322894	55322895	rs17348299	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	5q11.2	IL6ST, ANKRD55	rs17348299-C	0.836659126892253	2E-9	(IGP3)	0.2658	[0.18-0.35] unit decrease	Illumina [~ 2500000] (imputed)	N
1007	chr5	55322894	55322895	rs17348299	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	5q11.2	IL6ST, ANKRD55	rs17348299-C	0.836657880517164	4E-6	(IGP75)	0.2064	[0.12-0.29] unit decrease	Illumina [~ 2500000] (imputed)	N
1007	chr5	55324801	55324802	rs16884711	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	5q11.2	NR	rs16884711-C	0.189044272039181	2E-6	(IGP5)	0.1931	[0.11-0.27] unit increase	Illumina [~ 2500000] (imputed)	N
1007	chr5	55324801	55324802	rs16884711	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	5q11.2	NR	rs16884711-C	0.188959846461949	3E-6	(IGP45)	0.1908	[0.11-0.27] unit increase	Illumina [~ 2500000] (imputed)	N
1007	chr5	55326999	55327000	rs192381152	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (PANSS score)	1,390 European ancestry individuals	NA	5q11.2		rs192381152-A	NR	3E-6	(GLM)	4.0968	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
1007	chr5	55363522	55363523	rs148646711	30868120	Berghuis B	2019-01-17	Epilepsia Open	A genome-wide association study of sodium levels and drug metabolism in an epilepsy cohort treated with carbamazepine and oxcarbazepine.	Carbamazepine- or oxcarbazepine-induced hyponatremia in epilepsy	448 European ancestry cases, 804 European ancestry controls	NA	5q11.2	NR	rs148646711-?		2E-6		1.96	[1.48-2.59]	Illumina [NR]	N
1007	chr5	55364570	55364571	rs10471966	29489655	Liu X	2018-03-01	Medicine (Baltimore)	Genome-wide association study of maternal genetic effects and parent-of-origin effects on food allergy.	Egg allergy (maternal genetic effects)	201 European ancestry complete and incomplete trios	NA	5q11.2	LOC105378976	rs10471966-?	NR	3E-6				Illumina [NR]	N
1007	chr5	55374021	55374023	rs148173957	30868120	Berghuis B	2019-01-17	Epilepsia Open	A genome-wide association study of sodium levels and drug metabolism in an epilepsy cohort treated with carbamazepine and oxcarbazepine.	Sodium levels in epilepsy	1,252 European ancestry cases	NA	5q11.2	NA	rs148173957-?		2E-7		2.075	[NR] mEql/L decrease	Illumina [NR]	N
1007	chr5	55395609	55395610	rs3930044	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	5q11.2	ANKRD55	rs3930044-T	0.034709	3E-9		0.03764534	[0.025-0.05] unit increase	Affymetrix [93095623] (imputed)	N
1007	chr5	55405877	55405878	rs61381724	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	5q11.2	ANKRD55	rs61381724-C	0.30022	1E-13		0.017967021	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1007	chr5	55405877	55405878	rs61381724	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	5q11.2	ANKRD55	rs61381724-C	0.300211	1E-12		0.017250543	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1007	chr5	55409420	55409421	rs160919	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	5q11.2	ANKRD55	rs160919-A	0.266681	2E-9		0.01524625	[0.01-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1007	chr5	55422687	55422688	rs115312705	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q11.2	NR	rs115312705-G	0.01045	3E-12	(MPO)	0.2551	NR unit decrease	Illumina [1671387] (imputed)	N
1007	chr5	55426162	55426163	rs62363956	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	5q11.2	NR	rs62363956-T	NR	1E-11		0.0255	[0.018-0.033] unit decrease	Affymetrix [9000000] (imputed)	N
1007	chr5	55436850	55436851	rs6873385	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	5q11.2		rs6873385-A	NR	2E-37		0.0387	[0.033-0.045] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
1007	chr5	55438579	55438580	rs6859219	27386562	Andlauer TF	2016-06-17	Sci Adv	Novel multiple sclerosis susceptibility loci implicated in epigenetic regulation.	Multiple sclerosis	4,888 German ancestry cases, 10,395 German ancestry controls	2,903 Sardinian ancestry cases, 3,323 Sardinian ancestry controls	5q11.2	ANKRD55	rs6859219-?		8E-9		1.1904762		Illumina [at least 8143088] (imputed)	N
1007	chr5	55438579	55438580	rs6859219	20453842	Stahl EA	2010-05-09	Nat Genet	Genome-wide association study meta-analysis identifies seven new rheumatoid arthritis risk loci.	Rheumatoid arthritis	5,539 European ancestry cases, 20,169 European ancestry controls	6,768 European ancestry cases, 8,806 European ancestry controls	5q11.2	IL6ST, ANKRD55	rs6859219-C	0.79	1E-11		1.28	[NR]	Affymetrix, Illumina [~ 2716259] (imputed)	N
1007	chr5	55438850	55438851	rs10065637	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	IgA levels	16,883 Icelandic ancestry individuals	2,151 Swedish ancestry individuals	5q11.2	ANKRD55	rs10065637-T	0.2264	5E-10		0.08	NR SD units decrease	Illumina [21568490] (imputed)	N
1007	chr5	55438850	55438851	rs10065637	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	5q11.2	ANKRD55	rs10065637-?		5E-6				Illumina [9560910] (imputed)	N
1007	chr5	55438850	55438851	rs10065637	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	5q11.2	NR	rs10065637-G	0.79	1E-7	(EA)	1.0710944		Affymetrix, Illumina [~ 9000000] (imputed)	N
1007	chr5	55438850	55438851	rs10065637	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Crohn's disease	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls	5q11.2	IL6ST, IL31RA	rs10065637-C	0.773	4E-12		1.123	[1.079-1.17]	Affymetrix, Illumina [1230000] (imputed)	N
1007	chr5	55440729	55440730	rs71624119	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Rheumatoid arthritis	15,523 European ancestry cases, 22,308 European ancestry controls	NA	5q11.2	ANKRD55	rs71624119-?	0.76	1E-19		1.1948181		Illumina [252970]	N
1007	chr5	55440729	55440730	rs71624119	28706201	Wei WH	2017-07-13	Sci Rep	Genotypic variability based association identifies novel non-additive loci DHCR7 and IRF4 in sero-negative rheumatoid arthritis.	Sero-negative rheumatoid arthritis	3,323 European ancestry cases, 15,785 European ancestry controls	NA	5q11.2	ANKRD55	rs71624119-?	NR	3E-13				Illumina [107144]	N
1007	chr5	55440729	55440730	rs71624119	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	5q11.2	ANKRD55	rs71624119-?	NR	2E-8	(subset analysis)			Illumina [130052]	N
1007	chr5	55440729	55440730	rs71624119	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	5q11.2	NR	rs71624119-?	NR	7E-10	(EA)			Affymetrix, Illumina [~ 9000000] (imputed)	N
1007	chr5	55440729	55440730	rs71624119	24532676	Kim K	2014-02-14	Ann Rheum Dis	High-density genotyping of immune loci in Koreans and Europeans identifies eight new rheumatoid arthritis risk loci.	Rheumatoid arthritis (ACPA-positive)	2,234 Korean ancestry cases, 7,065 Korean ancestry controls, 10,288 European ancestry cases, 35,502 European ancestry controls	NA	5q11.2	ANKRD55	rs71624119-G	0.77	3E-18		1.2195122	[1.16-1.27]	Illumina [133816] (imputed)	N
1007	chr5	55440729	55440730	rs71624119	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	5q11.2	ANKRD55	rs71624119-G	0.76	3E-13		1.11		Illumina [161311]	N
1007	chr5	55440729	55440730	rs71624119	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis (ACPA-positive)	up to 9,585 European ancestry cases, up to 33,742 European ancestry controls	NA	5q11.2	ANKRD55	rs71624119-?	0.75	1E-11		1.1936022		Illumina [129464] (imputed)	N
1007	chr5	55440729	55440730	rs71624119	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis (ACPA-negative)	3,297 European ancestry cases, 15,870 European ancestry controls	NA	5q11.2	ANKRD55	rs71624119-?	0.75	5E-12		1.2750223		Illumina [129464]	N
1007	chr5	55440729	55440730	rs71624119	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis	up to 13,838 European ancestry cases, up to 33,742 European ancestry controls	NA	5q11.2	ANKRD55	rs71624119-?	0.75	6E-20		1.2294075		Illumina [129464] (imputed)	N
1007	chr5	55442248	55442249	rs10213692	34127860	Robertson CC	2021-06-14	Nat Genet	Fine-mapping, trans-ancestral and genomic analyses identify causal variants, cells, genes and drug targets for type 1 diabetes.	Type 1 diabetes	20,065 European ancestry cases, 33,065 European ancestry controls, 1,045 other-admixed ancestry cases, 1,103 other-admixed ancestry controls, 1,043 African ancestry cases, 3,206 African ancestry controls	NA	5q11.2	ANKRD55, IL6ST	rs10213692-C	0.241	3E-9		0.912		Illumina [715631] (imputed)	N
1007	chr5	55442248	55442249	rs10213692	34127860	Robertson CC	2021-06-14	Nat Genet	Fine-mapping, trans-ancestral and genomic analyses identify causal variants, cells, genes and drug targets for type 1 diabetes.	Type 1 diabetes	20,065 European ancestry cases, 33,065 European ancestry controls, 1,045 other-admixed ancestry cases, 1,103 other-admixed ancestry controls, 1,043 African ancestry cases, 3,206 African ancestry controls	NA	5q11.2	ANKRD55, IL6ST	rs10213692-C	0.241	3E-9		0.912		Illumina [715631] (imputed)	N
1007	chr5	55442248	55442249	rs10213692	23603761	Hinks A	2013-04-21	Nat Genet	Dense genotyping of immune-related disease regions identifies 14 new susceptibility loci for juvenile idiopathic arthritis.	Juvenile idiopathic arthritis (oligoarticular or rheumatoid factor-negative polyarticular)	2,816 European ancestry cases, 13,056 European ancestry controls	NA	5q11.2	ANKRD55	rs10213692-?	0.75	3E-11	(additive model)	1.2658228	[1.25-1.35]	Illumina [123003]	N
1008	chr5	55444039	55444040	rs10214316	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	5q11.2	NR	rs10214316-T	NR	7E-11		0.018	[0.013-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
1008	chr5	55444682	55444683	rs7731626	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Rheumatoid arthritis	8,255 European ancestry cases, 409,001 European ancestry controls, 5,348 East Asian ancestry cases, 173,268 East Asian ancestry controls	NA	5q11.2		rs7731626-A	NR	1E-17		0.1343	[0.1-0.17] unit decrease	Affymetrix, Illumina [25835038] (imputed)	N
1008	chr5	55444682	55444683	rs7731626	33310728	Ha E	2020-12-11	Ann Rheum Dis	Large-scale meta-analysis across East Asian and European populations updated genetic architecture and variant-driven biology of rheumatoid arthritis, identifying 11 novel susceptibility loci.	Rheumatoid arthritis	14,361 European ancestry cases, 43,923 European ancestry controls, 8,267 East Asian ancestry cases, 244,741 East Asian ancestry controls	NA	5q11.2		rs7731626-A	NR	2E-26		0.82	[0.79-0.85]	NR [13810676] (imputed)	N
1008	chr5	55444682	55444683	rs7731626	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	5q11.2	NR	rs7731626-A	0.373868	6E-11		0.012528	[0.0088-0.0163] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
1008	chr5	55444682	55444683	rs7731626	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	5q11.2	ANKRD55	rs7731626-G	NR	4E-15		1.0944	NR	Affymetrix, Illumina [8278136] (imputed)	N
1008	chr5	55444682	55444683	rs7731626	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	5q11.2	ANKRD55	rs7731626-A	NR	2E-22		0.188089	[0.14-0.23] unit decrease	Illumina [8380626] (imputed)	N
1008	chr5	55444682	55444683	rs7731626	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	5q11.2	ANKRD55	rs7731626-A	0.37	8E-23	(EA)	0.19311	[0.15-0.23] unit decrease	Illumina [8380626] (imputed)	N
1008	chr5	55444682	55444683	rs7731626	26301688	Li YR	2015-08-24	Nat Med	Meta-analysis of shared genetic architecture across ten pediatric autoimmune diseases.	Pediatric autoimmune diseases	97 European ancestry thyroiditis cases, 107 European ancestry ankylosing spondylitis cases, 100 European ancestry psoriasis cases, 173 European ancestry celiac disease cases, 254 European ancestry systemic lupus erythematosus cases, 308 European ancestry common variable inmunodeficiency cases, 865 European ancestry ulcerative colitis cases, 1,086 European ancestry Type 1 diabetes cases, 1,123  European ancestry juvenile idiopathic arthritis cases, 1,922  European ancestry Crohn's disease cases, 10,718 European ancestry controls	NA	5q11.2	ANKRD55	rs7731626-A	0.39	1E-10				Illumina [7347414] (imputed)	N
1008	chr5	55444682	55444683	rs7731626	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	5q11.2	ANKRD55	rs7731626-G	0.63	8E-23	(EA)	1.21	[1.17-1.26]	Affymetrix, Illumina [up to 9739303] (imputed)	N
1008	chr5	55450210	55450211	rs10077826	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	5q11.2	NR	rs10077826-T	0.28	4E-10		0.0131	[0.0089-0.0173] unit decrease	NR [NR]	N
1008	chr5	55453941	55453942	rs28722705	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	5q11.2		rs28722705-T	NR	1E-20		0.0304	[0.024-0.037] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
1008	chr5	55453941	55453942	rs28722705	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	5q11.2	ANKRD55	rs28722705-T	0.148497	5E-27		0.033682086	[0.028-0.04] unit increase	Affymetrix [93095623] (imputed)	N
1008	chr5	55453941	55453942	rs28722705	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q11.2	NR	rs28722705-T	0.143802	2E-35				Affymetrix, Illumina [23467995] (imputed)	N
1008	chr5	55453941	55453942	rs28722705	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	5q11.2	NR	rs28722705-T	0.149045	1E-38		0.034302	[0.029-0.039] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
1008	chr5	55453941	55453942	rs28722705	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	5q11.2		rs28722705-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1008	chr5	55453941	55453942	rs28722705	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	5q11.2	ANKRD55	rs28722705-T	0.1484	4E-11		0.03322868	[0.023-0.043] unit increase	Affymetrix [~ 2500000] (imputed)	N
1008	chr5	55455644	55455645	rs13186299	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	5q11.2	NR	rs13186299-C	NR	2E-22		0.0346	[0.028-0.042] unit decrease	Affymetrix [9000000] (imputed)	N
1008	chr5	55455644	55455645	rs13186299	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	5q11.2	NR	rs13186299-C	NR	4E-46		0.0507	[0.044-0.058] unit decrease	Affymetrix [9000000] (imputed)	N
1008	chr5	55455644	55455645	rs13186299	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	5q11.2	ANKRD55	rs13186299-C	0.14812	7E-22		0.03004299	[0.024-0.036] unit increase	Affymetrix [93095623] (imputed)	N
1008	chr5	55507045	55507046	rs159572	27167565	Stein MB	2016-05-11	JAMA Psychiatry	Genome-wide Association Studies of Posttraumatic Stress Disorder in 2 Cohorts of US Army Soldiers.	Post-traumatic stress disorder	2140 European ancestry cases, 497 African American ancestry cases, 530 Latino American ancestry cases, 2909 European ancestry trauma-exposed controls, 815 African American ancestry trauma-exposed controls, 883 Latino American ancestry trauma-exposed controls.	672 European ancestry cases, 97 African American ancestry cases, 178 Latino American ancestry cases, 3335 European ancestry trauma-exposed controls, 570 African American ancestry trauma-exposed controls, 1064 Latino American ancestry trauma-exposed controls.	5q11.2	ANKRD55	rs159572-A		6E-8	African Americans	1.51	[1.3-1.75]	Illumina [664457] (imputed)	N
1008	chr5	55510655	55510656	rs4700060	23535033	Sherva R	2013-03-24	Alzheimers Dement	Genome-wide association study of the rate of cognitive decline in Alzheimer's disease.	Alzheimer's disease (cognitive decline)	303 European ancestry cases		5q11.2	ANKRD55	rs4700060-?	0.1	1E-8		0.21	unit decrease	Illumina [NR] (imputed)	N
1008	chr5	55560026	55560027	rs1020388	21383967	Zhernakova A	2011-02-24	PLoS Genet	Meta-analysis of genome-wide association studies in celiac disease and rheumatoid arthritis identifies fourteen non-HLA shared loci.	Celiac disease or Rheumatoid arthritis	4,533 European ancestry celiac disease cases, 5,539 European ancestry rheumatoid arthritis cases, 27,981 European ancestry controls	2,169 European ancestry celiac disease cases, 2,845 European ancestry rheumatoid arthritis cases, 7,199 European ancestry controls	5q11.2	ANKRD55	rs1020388-?	NR	3E-7				Illumina [472854]	N
1009	chr5	55576015	55576016	rs158638	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	5q11.2		rs158638-?	NR	4E-10				NR [~ 8900000] (imputed)	N
1009	chr5	55578660	55578661	rs158653	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (multi-trait analysis)	90,939 European ancestry individuals	NA	5q11.2	ANKRD55, LOC102467147	rs158653-G	0.48	2E-13		0.0063	NR unit increase	Affymetrix, Illumina [8002429] (imputed)	N
1009	chr5	55578660	55578661	rs158653	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (adjusted for vertical disc diameter)	67,040 British ancestry individuals	NA	5q11.2	ANKRD55	rs158653-G	0.48	1E-9		0.00533	[0.0036-0.007] unit increase	Affymetrix [at least 8002429] (imputed)	N
1009	chr5	55590200	55590201	rs72752211	29273593	Duan L	2017-12-22	Stroke	Novel Susceptibility Loci for Moyamoya Disease Revealed by a Genome-Wide Association Study.	Moyamoya disease	755 Han Chinese ancestry cases, 2,031 Han Chinese ancestry controls	724 Han Chinese ancestry cases, 3,043 Han Chinese ancestry controls	5q11.2	NR	rs72752211-A	0.03	4E-7		1.82	[NR]	Illumina [747089]	N
1009	chr5	55611709	55611710	rs158639	30542056	Petridis C	2018-12-12	Nat Commun	Genome-wide meta-analysis implicates mediators of hair follicle development and morphogenesis in risk for severe acne.	Acne (severe)	5,602 European ancestry cases, 21,120 European ancestry controls	NA	5q11.2	Intergenic	rs158639-A	0.27	3E-8		1.14	[1.09-1.19]	Illumina [up to 7441713] (imputed)	N
1009	chr5	55624904	55624905	rs158343	35132056	Mitchell BL	2022-02-07	Nat Commun	Genome-wide association meta-analysis identifies 29 new acne susceptibility loci.	acne vulgaris	20,165 European ancestry cases, 595,231 European ancestry controls	NA	5q11.2	NR	rs158343-G	0.2006	3E-16		1.13	[1.1-1.17]	Affymetrix, Illumina [7072771] (imputed)	N
1009	chr5	55625332	55625333	rs158342	29703844	van Zuydam NR	2018-04-27	Diabetes	A Genome-Wide Association Study of Diabetic Kidney Disease in Subjects With Type 2 Diabetes.	Late diabetic kidney disease in type 2 diabetes	1,339 European ancestry cases, 2,372 European ancestry controls	2,891 European ancestry cases, 6,962 European ancestry controls, 3,755 Asian cases, 10,160 Asian controls, 178 Chinese ancestry cases, 154 Chinese ancestry controls, 39 Indian ancestry cases, 64 Indian ancestry controls	5q11.2	NR	rs158342-?		7E-6	(EA)	1.25	[1.15-1.36]	Affymetrix, Illumina [up to 9343778] (imputed)	N
1009	chr5	55625332	55625333	rs158342	29703844	van Zuydam NR	2018-04-27	Diabetes	A Genome-Wide Association Study of Diabetic Kidney Disease in Subjects With Type 2 Diabetes.	Late diabetic kidney disease in type 2 diabetes	1,339 European ancestry cases, 2,372 European ancestry controls	2,891 European ancestry cases, 6,962 European ancestry controls, 3,755 Asian cases, 10,160 Asian controls, 178 Chinese ancestry cases, 154 Chinese ancestry controls, 39 Indian ancestry cases, 64 Indian ancestry controls	5q11.2	NR	rs158342-?		4E-6		1.24	[1.15-1.34]	Affymetrix, Illumina [up to 9343778] (imputed)	N
1009	chr5	55642778	55642779	rs32495	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	5q11.2	NR	rs32495-?	NR	8E-7		4.942	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1009	chr5	55657705	55657706	rs7378815	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	5q11.2	NR	rs7378815-T	0.1244	4E-7	(EA)	0.0494	[0.03-0.069] unit decrease	Illumina [~ 11800000] (imputed)	N
1009	chr5	55685355	55685356	rs285994	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	5q11.2	NR	rs285994-?	NR	9E-6				Affymetrix [NR]	N
1009	chr5	55688991	55688992	rs10054208	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls, 49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	5q11.2		rs10054208-T	NR	4E-9		0.0353	[0.024-0.047] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1009	chr5	55692938	55692939	rs10043077	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	5q11.2		rs10043077-?	NR	6E-9				NR [~ 8900000] (imputed)	N
1009	chr5	55699402	55699403	rs158082	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	5q11.2	HMGN1P17	rs158082-G	NR	1E-10		0.0191023	[0.013-0.025] unit decrease	Affymetrix [321788] (imputed)	N
1010	chr5	55742831	55742832	rs30371	31809533	Han X	2019-09-06	Hum Mol Genet	Genome-wide association analysis of 95 549 individuals identifies novel loci and genes influencing optic disc morphology.	Optic disc size	67,040 British ancestry individuals	28,509 European ancestry individuals	5q11.2	ANKRD55	rs30371-T	0.63	3E-8		0.01	unit decrease	Affymetrix [8928767] (imputed)	N
1010	chr5	55744229	55744230	rs30372	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (multi-trait analysis)	90,939 European ancestry individuals	NA	5q11.2	ANKRD55, LOC102467147	rs30372-T	0.24	1E-12		0.0072	NR unit decrease	Affymetrix, Illumina [8002429] (imputed)	N
1010	chr5	55744229	55744230	rs30372	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (adjusted for vertical disc diameter)	67,040 British ancestry individuals	NA	5q11.2	LOC102467147	rs30372-T	0.24	1E-9		0.00649	[0.0044-0.0086] unit decrease	Affymetrix [at least 8002429] (imputed)	N
1010	chr5	55745333	55745334	rs30373	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	5q11.2	ANKRD55, LINC01948	rs30373-?	NR	5E-11		0.464	[0.32-0.6] unit decrease	Affymetrix [11100000] (imputed)	N
1010	chr5	55764930	55764931	rs421215	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	5q11.2	NR	rs421215-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
1010	chr5	55766620	55766621	rs16885512	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	5q11.2	CTC-236F12.4	rs16885512-C	0.920412	2E-8		0.0199999	[0.013-0.027] unit increase	Affymetrix [NR] (imputed)	N
1010	chr5	55769710	55769711	rs284031	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	5q11.2	CTC-236F12.4	rs284031-A	NR	5E-9		0.0194389	[0.013-0.026] unit increase	Affymetrix [321114] (imputed)	N
1010	chr5	55769710	55769711	rs284031	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	5q11.2	CTC-236F12.4	rs284031-A	NR	2E-8		0.0188022	[0.012-0.025] unit increase	Affymetrix [323858] (imputed)	N
1010	chr5	55774612	55774613	rs61120022	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	Blood glucose levels	291,107 British ancestry individuals	NA	5q11.2	LINC01948	rs61120022-G	0.142426	7E-6		0.00484254	[0.0027-0.0069] unit decrease	Affymetrix [9463307] (imputed)	N
1010	chr5	55775555	55775556	rs61275591	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glaucoma	10,411 European ancestry cases, 474,568 European ancestry controls, 8,448 East Asian ancestry cases, 168,903 East Asian ancestry controls	NA	5q11.2		rs61275591-A	NR	6E-9		0.0902	[0.06-0.121] unit increase	Affymetrix, Illumina [25844939] (imputed)	N
1010	chr5	55775555	55775556	rs61275591	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls	NA	5q11.2	LOC102467147-C5orf67	rs61275591-A	NR	6E-14		1.17727	[1.13-1.22]	Illumina [11610548] (imputed)	N
1010	chr5	55775555	55775556	rs61275591	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Glaucoma	5,761 Japanese ancestry cases, 206,692 Japanese ancestry controls	NA	5q11.2		rs61275591-A	0.273973577	5E-11		1.1533304	[1.105342931-1.203401415]	Illumina [8919992] (imputed)	N
1010	chr5	55776256	55776257	rs115865075	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	5q11.2	CTC-236F12.4	rs115865075-T	NR	6E-10		0.0788616	[0.054-0.104] unit increase	Affymetrix [319769] (imputed)	N
1010	chr5	55776256	55776257	rs115865075	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	5q11.2	CTC-236F12.4	rs115865075-T	NR	4E-10		0.0799452	[0.055-0.105] unit increase	Affymetrix [319769] (imputed)	N
1010	chr5	55776256	55776257	rs115865075	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	5q11.2	CTC-236F12.4	rs115865075-T	NR	1E-8		0.0730192	[0.048-0.098] unit increase	Affymetrix [321169] (imputed)	N
1010	chr5	55776256	55776257	rs115865075	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	5q11.2	NR	rs115865075-?	NR	3E-10				Affymetrix [~ 8270000] (imputed)	N
1010	chr5	55783677	55783678	rs112142644	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	9,179 European ancestry cases, 134,471 European ancestry controls, 1,983 East Asian ancestry cases, 13,719 East Asian ancestry controls, 127 Sub-Saharan African ancestry cases, 100 Sub-Saharan African ancestry controls	NA	5q11.2	LOC102467147-C5orf67	rs112142644-A	NR	7E-9		1.17563	[1.12-1.23]	Illumina [NR] (imputed)	N
1010	chr5	55783677	55783678	rs112142644	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	8,758 European ancestry cases, 108,815 European ancestry controls, 1,996 East Asian ancestry cases, 16,559  East Asian ancestry controls, 171 Sub-Saharan African ancestry cases, 94 Sub-Saharan African ancestry controls	NA	5q11.2	LOC102467147-C5orf67	rs112142644-A	NR	5E-7		1.1474	[1.09-1.2]	Illumina [NR] (imputed)	N
1010	chr5	55783831	55783832	rs72644085	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	5q11.2	CTC-236F12.4	rs72644085-T	0.853965	3E-12		0.0197312	[0.014-0.025] unit increase	Affymetrix [NR] (imputed)	N
1010	chr5	55785320	55785321	rs115369753	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	5q11.2	CTC-236F12.4	rs115369753-C	NR	1E-9		0.0496678	[0.034-0.066] unit increase	Affymetrix [319769] (imputed)	N
1010	chr5	55785320	55785321	rs115369753	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	5q11.2	CTC-236F12.4	rs115369753-C	NR	4E-10		0.0510544	[0.035-0.067] unit increase	Affymetrix [319769] (imputed)	N
1010	chr5	55785320	55785321	rs115369753	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	5q11.2	NR	rs115369753-?	NR	4E-12				Affymetrix [~ 8270000] (imputed)	N
1010	chr5	55789215	55789216	rs16885547	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (high intraocular pressure)	3,376 European ancestry cases, 15,151 European ancestry controls, 1,516 East Asian ancestry cases, 32,649 East Asian ancestry controls, 252 Sub-Saharan African ancestry cases, 197 Sub-Saharan African ancestry controls	NA	5q11.2	LOC102467147-C5orf67	rs16885547-A	NR	1E-9		1.26263	[1.19-1.34]	Illumina [NR] (imputed)	N
1010	chr5	55794631	55794632	rs30351	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Triglycerides	429,011 European ancestry individuals	NA	5q11.2		rs30351-G	0.26	9E-44		0.031	mmol/L decrease	NR [NR] (imputed)	N
1010	chr5	55794631	55794632	rs30351	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Sex hormone-binding globulin levels	389,354 European ancestry individuals	NA	5q11.2		rs30351-G	0.26	5E-42		0.029	nmol/L increase	NR [NR] (imputed)	N
1010	chr5	55794631	55794632	rs30351	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	5q11.2		rs30351-G	0.26	2E-59				NR [NR] (imputed)	N
1010	chr5	55794631	55794632	rs30351	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	High density lipoprotein cholesterol levels	392,965 European ancestry individuals	NA	5q11.2		rs30351-G	0.26	2E-38		0.027	mmol/L increase	NR [NR] (imputed)	N
1010	chr5	55794631	55794632	rs30351	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	5q11.2		rs30351-G	0.26	2E-12		0.012	% increase	NR [NR] (imputed)	N
1010	chr5	55794631	55794632	rs30351	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Alanine aminotransferase levels	429,203 European ancestry individuals	NA	5q11.2		rs30351-G	0.26	7E-16		0.018	U/L decrease	NR [NR] (imputed)	N
1010	chr5	55794631	55794632	rs30351	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	Waist circumference	291,107 British ancestry individuals	NA	5q11.2	AC116606.1	rs30351-G	0.25520399	3E-6		0.168111	[0.098-0.238] unit increase	Affymetrix [9463307] (imputed)	N
1010	chr5	55794631	55794632	rs30351	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	Triglyceride levels	291,107 British ancestry individuals	NA	5q11.2	AC116606.1	rs30351-G	0.25520399	7E-21		0.0226889	[0.018-0.027] unit decrease	Affymetrix [9463307] (imputed)	N
1010	chr5	55794631	55794632	rs30351	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	High density lipoprotein cholesterol levels	291,107 British ancestry individuals	NA	5q11.2	AC116606.1	rs30351-G	0.25520399	2E-17		0.00890599	[0.0069-0.011] unit increase	Affymetrix [9463307] (imputed)	N
1010	chr5	55796171	55796172	rs16885581	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	5q11.2	NR	rs16885581-?	NR	4E-13				Affymetrix [~ 8270000] (imputed)	N
1010	chr5	55796171	55796172	rs16885581	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	5q11.2	NR	rs16885581-?	NR	1E-10				Affymetrix [~ 8270000] (imputed)	N
1010	chr5	55796638	55796639	rs157845	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	5q11.2	AC022431.1	rs157845-C	0.745369	1E-14		0.019467808	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1010	chr5	55797381	55797382	rs588898	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	5q11.2	AC022431.1	rs588898-A	NR	7E-19		0.0419691	[0.033-0.051] unit increase	Affymetrix [323858] (imputed)	N
1010	chr5	55797381	55797382	rs588898	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	5q11.2	AC022431.1	rs588898-A	NR	1E-19		0.042792	[0.034-0.052] unit increase	Affymetrix [127266] (imputed)	N
1010	chr5	55797598	55797599	rs173443	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	5q11.2	AC022431.1	rs173443-C	NR	2E-18		0.0408565	[0.032-0.05] unit increase	Affymetrix [321114] (imputed)	N
1010	chr5	55799977	55799978	rs116270959	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation GrimAge acceleration	6,148 African American individuals	NA	5q11.2	NR	rs116270959-C	0.971	7E-9		1.5009	[0.99-2.01] unit increase	Affymetrix, Illumina [12989440] (imputed)	N
1010	chr5	55801338	55801339	rs29999	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in never smokers	2,355 European ancestry cases,  7,504 European ancestry controls	NA	5q11.2	LOC102467147, C5orf67	rs29999-A	0.014806343	8E-6		1.8959502	[1.433001343-2.508460415]	Illumina [10439017] (imputed)	N
1010	chr5	55801933	55801933	rs34262409	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	5q11.2	AC022431.1	rs34262409-CT	NR	3E-8		0.0266359	[0.017-0.036] unit increase	Affymetrix [319769] (imputed)	N
1010	chr5	55801933	55801933	rs34262409	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	5q11.2	AC022431.1	rs34262409-CT	NR	2E-8		0.0270923	[0.018-0.037] unit increase	Affymetrix [319769] (imputed)	N
1010	chr5	55802775	55802776	rs115688899	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	5q11.2	AC022431.1	rs115688899-C	NR	5E-8		0.0468789	[0.03-0.064] unit increase	Affymetrix [319769] (imputed)	N
1010	chr5	55803532	55803533	rs30000	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI in non-smokers	75,379 European ancestry women, 45,811 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	5q11.2	MAP3K1	rs30000-G	0.261	4E-16	(EA, men)	0.036	[0.028-0.044] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1010	chr5	55803532	55803533	rs30000	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (smoking interaction)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	5q11.2	MAP3K1	rs30000-G	0.260	3E-7	(EA, men)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1010	chr5	55803532	55803533	rs30000	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	5q11.2	MAP3K1	rs30000-G	0.26	3E-17	(EA, men)	0.039	[0.029-0.049] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1010	chr5	55803928	55803929	rs42392	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	5q11.2	NR	rs42392-G	NR	2E-16		0.0292	[0.022-0.036] unit decrease	Affymetrix [9000000] (imputed)	N
1010	chr5	55803928	55803929	rs42392	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	5q11.2	NR	rs42392-G	NR	4E-13		0.027	[0.02-0.034] unit increase	Affymetrix [9000000] (imputed)	N
1010	chr5	55803928	55803929	rs42392	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	5q11.2	NR	rs42392-G	NR	3E-11		0.0247	[0.017-0.032] unit increase	Affymetrix [9000000] (imputed)	N
1010	chr5	55803928	55803929	rs42392	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	5q11.2	NR	rs42392-G	NR	3E-9		0.0212	[0.014-0.028] unit increase	Affymetrix [9000000] (imputed)	N
1010	chr5	55804551	55804552	rs40270	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	5q11.2		rs40270-A	0.22831	7E-9		0.0273128	[0.018-0.037] unit increase	NR [11722792] (imputed)	N
1010	chr5	55804551	55804552	rs40270	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	5q11.2		rs40270-A	0.228188	9E-14		0.03554	[0.026-0.045] unit increase	NR [11722792] (imputed)	N
1010	chr5	55804551	55804552	rs40270	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	5q11.2		rs40270-A	0.228103	6E-11		0.0320896	[0.022-0.042] unit increase	NR [11722792] (imputed)	N
1010	chr5	55804551	55804552	rs40270	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	5q11.2		rs40270-A	0.228315	2E-14		0.0359977	[0.027-0.045] unit increase	NR [11722792] (imputed)	N
1010	chr5	55804551	55804552	rs40270	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	5q11.2		rs40270-A	0.228315	5E-10		0.029909	[0.02-0.039] unit increase	NR [11722792] (imputed)	N
1010	chr5	55804551	55804552	rs40270	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	5q11.2		rs40270-A	0.228103	6E-10		0.030566	[0.021-0.04] unit increase	NR [11722792] (imputed)	N
1010	chr5	55804551	55804552	rs40270	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	5q11.2	ANKRD55, MAP3K1	rs40270-C	0.77	2E-14		7.69	z-score increase	Affymetrix [4312306] (imputed)	N
1010	chr5	55804551	55804552	rs40270	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	5q11.2	AC022431.1	rs40270-C	0.771893	1E-12		0.019045342	[0.014-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1010	chr5	55804551	55804552	rs40270	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	5q11.2	AC022431.1	rs40270-C	0.772005	5E-11		0.017602516	[0.012-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1010	chr5	55804551	55804552	rs40270	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	5q11.2	NR	rs40270-C	0.771311	7E-13		0.017058	[0.012-0.022] SD unit increase	Affymetrix, Illumina [50282193] (imputed)	N
1010	chr5	55804551	55804552	rs40270	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	5q11.2	NR	rs40270-A	0.227867	2E-9		0.0219284	[0.015-0.029] unit increase	Affymetrix [16577313] (imputed)	N
1010	chr5	55804551	55804552	rs40270	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	5q11.2	NR	rs40270-A	0.227273	2E-60		0.0161631	[0.014-0.018] unit increase	Affymetrix [16582909] (imputed)	N
1010	chr5	55804551	55804552	rs40270	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	5q11.2	NR	rs40270-A	0.22669	9E-35		0.0177111	[0.015-0.021] unit increase	Affymetrix [16585854] (imputed)	N
1010	chr5	55804551	55804552	rs40270	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	5q11.2	NR	rs40270-A	0.227884	4E-26		0.014287	[0.012-0.017] unit increase	Affymetrix [16582621] (imputed)	N
1010	chr5	55804551	55804552	rs40270	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	5q11.2	NR	rs40270-A	0.227273	7E-51		0.0166779	[0.014-0.019] unit increase	Affymetrix [16582965] (imputed)	N
1010	chr5	55804551	55804552	rs40270	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	5q11.2	NR	rs40270-A	0.22669	2E-29		0.0188705	[0.016-0.022] unit increase	Affymetrix [16585866] (imputed)	N
1010	chr5	55804551	55804552	rs40270	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	5q11.2	NR	rs40270-A	0.227884	1E-22		0.0141665	[0.011-0.017] unit increase	Affymetrix [16582614] (imputed)	N
1010	chr5	55804551	55804552	rs40270	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	5q11.2	NR	rs40270-C	0.773334	4E-10		0.0189592	[0.013-0.025] unit increase	Affymetrix [16585745] (imputed)	N
1010	chr5	55804551	55804552	rs40270	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	5q11.2	NR	rs40270-C	0.772642	3E-12		0.0574909	[0.042-0.073] unit increase	Affymetrix [17914406] (imputed)	N
1010	chr5	55805638	55805639	rs467022	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Triglycerides levels in chylomicrons and extremely large VLDL meal response (OrNLSr)	4,292 individuals	NA	5q11.2		rs467022-T	0.77003751	3E-9		0.165782	[0.11-0.22] unit increase	Illumina [7701709] (imputed)	N
1010	chr5	55805638	55805639	rs467022	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Total lipids in chylomicrons and extremely large VLDL meal response (OrNLSr)	4,292 individuals	NA	5q11.2		rs467022-T	0.77003751	2E-9		0.167578	[0.11-0.22] unit increase	Illumina [7701709] (imputed)	N
1010	chr5	55805638	55805639	rs467022	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Chylomicron and extremely large VLDL particle concentration meal response (OrNLSr)	4,292 individuals	NA	5q11.2		rs467022-T	0.77003751	2E-9		0.166684	[0.11-0.22] unit increase	Illumina [7701709] (imputed)	N
1010	chr5	55805638	55805639	rs467022	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Cholesterol esters in very large VLDL meal response (OrNLSr)	4,292 individuals	NA	5q11.2		rs467022-T	0.768960659	7E-9		0.157321	[0.1-0.21] unit increase	Illumina [7701709] (imputed)	N
1010	chr5	55806750	55806751	rs459193	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Degree of unsaturation	115,006 European ancestry individuals	NA	5q11.2		rs459193-A	0.253065	2E-8		0.0251118	[0.016-0.034] unit increase	NR [11722792] (imputed)	N
1010	chr5	55806750	55806751	rs459193	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	5q11.2		rs459193-G	NR	3E-16		0.019	[0.014-0.024] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
1010	chr5	55806750	55806751	rs459193	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting insulin	29,792 East Asian ancestry individuals	NA	5q11.2	LOC101928448	rs459193-A	0.4955	2E-6		0.0219	[0.013-0.031] unit decrease	Affymetrix, Illumina [14733249] (imputed)	N
1010	chr5	55806750	55806751	rs459193	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting insulin	16,386 Hispanic individuals	NA	5q11.2	LOC101928448	rs459193-A	0.2704	6E-6		0.0333	[0.019-0.047] unit decrease	Affymetrix, Illumina [26195808] (imputed)	N
1010	chr5	55806750	55806751	rs459193	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting insulin	151,013 European ancestry individuals	NA	5q11.2	LOC101928448	rs459193-A	0.2666	1E-18		0.0181	[0.014-0.022] unit decrease	Affymetrix, Illumina [32635793] (imputed)	N
1010	chr5	55806750	55806751	rs459193	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Waist-hip ratio and type 2 diabetes (pairwise)	311,200 European ancestry individuals, 25,662 East Asian, South Asian, Hispanic and African American ancestry individuals	NA	5q11.2	ANKRD55-MAP3K1	rs459193-A	0.2913	1E-15				Affymetrix, Illumina [2331072] (imputed)	N
1010	chr5	55806750	55806751	rs459193	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Waist-hip ratio and triglycerides (pairwise)	393,171 European ancestry individuals, 11,333 East Asian, South Asian, Hispanic and African American ancestry individuals	NA	5q11.2	ANKRD55-MAP3K1	rs459193-A	0.2913	2E-21				Affymetrix, Illumina [2331072] (imputed)	N
1010	chr5	55806750	55806751	rs459193	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Waist-hip ratio and fasting insulin (pairwise)	267,060 European ancestry individuals, 11,333 East Asian, South Asian, Hispanic and African American ancestry individuals	NA	5q11.2	ANKRD55-MAP3K1	rs459193-A	0.29	4E-19				Affymetrix, Illumina [2331072] (imputed)	N
1010	chr5	55806750	55806751	rs459193	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Waist-hip ratio and fasting glucose (pairwise)	273,384 European ancestry individuals, 11,333 East Asian, South Asian, Hispanic and African American ancestry individuals	NA	5q11.2	ANKRD55-MAP3K1	rs459193-A	0.29	2E-16				Affymetrix, Illumina [2331072] (imputed)	N
1010	chr5	55806750	55806751	rs459193	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Waist-hip ratio and HDL-C (pairwise)	402,477 European ancestry individuals, 11,333 East Asian, South Asian, Hispanic and African American ancestry individuals	NA	5q11.2	ANKRD55-MAP3K1	rs459193-A	0.2913	4E-25				Affymetrix, Illumina [2331072] (imputed)	N
1010	chr5	55806750	55806751	rs459193	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body fat percentage and triglycerides (pairwise)	268,505 European ancestry individuals, 10,072 East Asian, South Asian and African American ancestry individuals	NA	5q11.2	ANKRD55-MAP3K1	rs459193-A	0.2913	6E-10				Affymetrix, Illumina [2331072] (imputed)	N
1010	chr5	55806750	55806751	rs459193	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body fat percentage and fasting insulin (pairwise)	142,394 European ancestry individuals, 10,072 East Asian, South Asian and African American ancestry individuals	NA	5q11.2	ANKRD55-MAP3K1	rs459193-A	0.2913	1E-8				Affymetrix, Illumina [2331072] (imputed)	N
1010	chr5	55806750	55806751	rs459193	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body fat percentage and HDL-C (pairwise)	277,811 European ancestry individuals, 10,022 East Asian, South Asian and African American ancestry individuals	NA	5q11.2	ANKRD55-MAP3K1	rs459193-A	0.2913	4E-13				Affymetrix, Illumina [2331072] (imputed)	N
1010	chr5	55806750	55806751	rs459193	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting insulin	105,056 European ancestry individuals	NA	5q11.2	ANKRD55, MAP3K1	rs459193-G	0.71215	3E-8		0.014927	[0.0097-0.0202] unit increase	Affymetrix, Illumina [8700000] (imputed)	N
1010	chr5	55806750	55806751	rs459193	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	5q11.2	NR	rs459193-A	0.25	4E-22		0.021	[0.017-0.025] unit decrease	NR [NR]	N
1010	chr5	55806750	55806751	rs459193	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	5q11.2		rs459193-A	0.2569	4E-13		0.12272184	[0.088-0.158] mmHg decrease	Affymetrix, Illumina [242866] (imputed)	N
1010	chr5	55806750	55806751	rs459193	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Hypertension	810,865 European ancestry individuals	354,096 European ancestry individuals	5q11.2		rs459193-A	0.2578	2E-14		7.65545	z score decrease	Affymetrix, Illumina [239843] (imputed)	N
1010	chr5	55806750	55806751	rs459193	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	145,648 East Asian ancestry individuals	NA	5q11.2	NR	rs459193-A	0.530172	3E-11		0.024689	[0.017-0.032] SD units increase	Affymetrix, Illumina [16710488] (imputed)	N
1010	chr5	55806750	55806751	rs459193	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q11.2	NR	rs459193-G	0.685706	2E-12				Affymetrix, Illumina [21126107] (imputed)	N
1010	chr5	55806750	55806751	rs459193	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	5q11.2	NR	rs459193-G	0.745836	6E-19		0.018753	[0.015-0.023] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
1010	chr5	55806750	55806751	rs459193	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	5q11.2		rs459193-G	0.463814486	2E-17		1.0725552	[1.055383029-1.09000669]	Illumina [8919992] (imputed)	N
1010	chr5	55806750	55806751	rs459193	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Waist-hip ratio variance	347,134 European ancestry individuals	NA	5q11.2	C5orf67	rs459193-?	NR	3E-13				NR [5554549] (imputed)	N
1010	chr5	55806750	55806751	rs459193	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Waist-hip ratio	347,134 European ancestry individuals	NA	5q11.2	C5orf67	rs459193-?	NR	2E-19				NR [5554549] (imputed)	N
1010	chr5	55806750	55806751	rs459193	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Fasting blood insulin	5,525 African American individuals, 12,687 Hispanic/Latino individuals, 1,547 Asian ancestry individuals, 1,397 Native Hawaiian ancestry individuals, 395 Native American ancestry individuals	NA	5q11.2	NR	rs459193-?	NR	4E-7		0.05297388	[0.033-0.073] unit increase	Illumina [28840767] (imputed)	N
1010	chr5	55806750	55806751	rs459193	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5q11.2		rs459193-?	NR	3E-10				NR [~ 8900000] (imputed)	N
1010	chr5	55806750	55806751	rs459193	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	5q11.2	NR	rs459193-A	0.24	3E-49		0.029	[0.025-0.033] unit increase	Affymetrix [2446094] (imputed)	N
1010	chr5	55806750	55806751	rs459193	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	5q11.2	NR	rs459193-A	0.24	5E-8				Affymetrix [2446094] (imputed)	N
1010	chr5	55806750	55806751	rs459193	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	5q11.2	intergenic	rs459193-A	0.2968	9E-29		0.0324	[0.027-0.038] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1010	chr5	55806750	55806751	rs459193	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	5q11.2	AC022431.2	rs459193-A	0.2967	2E-23		0.029	[0.023-0.035] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1010	chr5	55806750	55806751	rs459193	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	5q11.2	C5orf67	rs459193-A	0.254662376595439	9E-18		0.0711	[0.055-0.087] unit decrease	NR [5035015] (imputed)	N
1010	chr5	55806750	55806751	rs459193	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Platelet count	108,208 Japanese ancestry individuals	NA	5q11.2	C5orf67	rs459193-?	NR	4E-8		0.02332	[0.015-0.032] unit decrease novel	Illumina [6108953] (imputed)	N
1010	chr5	55806750	55806751	rs459193	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	5q11.2	LOC101928448	rs459193-A	0.2603	2E-7		0.0399	[0.025-0.055] unit decrease	NR [8041861] (imputed)	N
1010	chr5	55806750	55806751	rs459193	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	5q11.2	ANKRD55	rs459193-G	0.7087	5E-19		0.075	[0.059-0.091] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1010	chr5	55806750	55806751	rs459193	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	5q11.2	ANKRD55	rs459193-G	0.7087	1E-11	(EA)	0.078	[0.055-0.101] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1010	chr5	55806750	55806751	rs459193	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI in non-smokers	75,379 European ancestry women, 45,811 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	5q11.2	MAP3K1	rs459193-A	0.262	2E-18	(AA, men)	0.038	[0.03-0.046] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1010	chr5	55806750	55806751	rs459193	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI in non-smokers	75,379 European ancestry women, 45,811 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	5q11.2	ANKRD55	rs459193-A	0.2796	4E-10	(men)	0.0339	[0.023-0.044] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1010	chr5	55806750	55806751	rs459193	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (smoking interaction)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	5q11.2	MAP3K1	rs459193-A	0.264	2E-7	(AA, men)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1010	chr5	55806750	55806751	rs459193	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (joint analysis main effects and smoking interaction)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	5q11.2	MAP3K1	rs459193-A	0.264	2E-17	(men)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1010	chr5	55806750	55806751	rs459193	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (joint analysis main effects and smoking interaction)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	5q11.2	ANKRD55	rs459193-A	0.2796	2E-9	(men)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1010	chr5	55806750	55806751	rs459193	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	5q11.2	MAP3K1	rs459193-A	0.264	4E-20	(AA, men)	0.041	[0.033-0.049] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1010	chr5	55806750	55806751	rs459193	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	5q11.2	ANKRD55	rs459193-A	0.2796	9E-13		0.0278	[0.02-0.035] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1010	chr5	55806750	55806751	rs459193	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	5q11.2	ANKRD55	rs459193-A	0.2796	2E-13	(men)	0.0429	[0.031-0.054] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1010	chr5	55806750	55806751	rs459193	26961502	Wood AR	2016-03-10	Diabetologia	Variants in the FTO and CDKAL1 loci have recessive effects on risk of obesity and type 2 diabetes, respectively.	Type 2 diabetes	4,040 British ancestry cases, 113,735 British ancestry controls	NA	5q11.2	ANKRD55	rs459193-G	NR	1E-6	(additive model)	1.141	[1.09-1.19]	NR [9288881] (imputed)	N
1010	chr5	55806750	55806751	rs459193	26818947	Imamura M	2016-01-28	Nat Commun	Genome-wide association studies in the Japanese population identify seven novel loci for type 2 diabetes.	Type 2 diabetes	15,463 Japanese ancestry cases, 26,183 Japanese ancestry controls	20,490 East Asian ancestry cases, 22,922 East Asian ancestry controls, 38,947 European ancestry cases, 121,903 European ancestry controls, 10,587 South Asian ancestry cases, 14,378 South Asian ancestry controls, 3,848 Mexican/Latino cases, 4,366 Mexican/Latino controls	5q11.2	ANKRD55	rs459193-G	NR	1E-10	(Japanese)	1.10572	[1.07252-1.13996]	Illumina [7521072] (imputed)	N
1010	chr5	55806750	55806751	rs459193	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	5q11.2	NR	rs459193-A	0.263207257894075	6E-10		0.022980455	units increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1010	chr5	55806750	55806751	rs459193	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	5q11.2	ANKRD55	rs459193-A	0.2779	5E-12		0.0255	[0.018-0.033] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1010	chr5	55806750	55806751	rs459193	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	5q11.2	ANKRD55	rs459193-A	0.2769	5E-9	(men)	0.0315	[0.021-0.042] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1010	chr5	55806750	55806751	rs459193	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	5q11.2	ANKRD55	rs459193-A	0.2663	7E-9	(EA, men)	0.0325	[0.022-0.043] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1010	chr5	55806750	55806751	rs459193	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	5q11.2	ANKRD55	rs459193-A	0.2645	2E-11	(EA)	0.0259	[0.018-0.033] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1010	chr5	55806750	55806751	rs459193	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-hip ratio	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	5q11.2	MAP3K1	rs459193-A	0.2644	8E-8	(EA, women)	0.0269	[0.017-0.037] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1010	chr5	55806750	55806751	rs459193	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-hip ratio	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	5q11.2	MAP3K1	rs459193-A	0.2644	6E-12	(EA)	0.0263	[0.019-0.034] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1010	chr5	55806750	55806751	rs459193	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-hip ratio	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	5q11.2	MAP3K1	rs459193-A	0.2644	2E-6	(EA, men)	0.0257	[0.015-0.036] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1010	chr5	55806750	55806751	rs459193	25631608	Wessel J	2015-01-29	Nat Commun	Low-frequency and rare exome chip variants associate with fasting glucose and type 2 diabetes susceptibility.	Fasting blood insulin	35,380 European ancestry non-diabetic individuals, 12,738 African American non-diabetic individuals	NA	5q11.2	ANKRD5, MAP3K1	rs459193-T	0.287281916216699	2E-11		0.020481508	[0.015-0.026] unit decrease	Illumina [197481]	N
1010	chr5	55806750	55806751	rs459193	22885922	Morris AP	2012-09-01	Nat Genet	Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes.	Type 2 diabetes	6,377 European ancestry male cases, 5,794 European ancestry female cases, 22,243 European ancestry male controls, 34,619 European ancestry female controls	12,938 European ancestry male cases, 8,553 European ancestry female cases, 904 Pakistani ancestry male cases, 274 Pakistani ancestry female cases, 30,273 European ancestry male controls, 25,374 European ancestry female controls, 2,088 Pakistani ancestry male controls, 384 Pakistani ancestry female controls	5q11.2	ANKRD55	rs459193-G	NR	3E-6	(men)	1.08	[1.05-1.12]	Affymetrix, Illumina [up to 2500000] (imputed)	N
1010	chr5	55806750	55806751	rs459193	22885922	Morris AP	2012-09-01	Nat Genet	Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes.	Type 2 diabetes	6,377 European ancestry male cases, 5,794 European ancestry female cases, 22,243 European ancestry male controls, 34,619 European ancestry female controls	12,938 European ancestry male cases, 8,553 European ancestry female cases, 904 Pakistani ancestry male cases, 274 Pakistani ancestry female cases, 30,273 European ancestry male controls, 25,374 European ancestry female controls, 2,088 Pakistani ancestry male controls, 384 Pakistani ancestry female controls	5q11.2	ANKRD55	rs459193-G	0.702406932963936	6E-9		1.08	[1.05-1.11]	Affymetrix, Illumina [up to 2500000] (imputed)	N
1010	chr5	55807369	55807370	rs464605	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	5q11.2		rs464605-T	NR	2E-9		0.0128	[0.0087-0.0169] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1010	chr5	55807369	55807370	rs464605	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	5q11.2		rs464605-T	NR	4E-19		0.0717	[0.056-0.087] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1010	chr5	55807369	55807370	rs464605	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	5q11.2	AC022431.2	rs464605-T	0.745907	3E-18		0.022077201	[0.017-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1010	chr5	55807369	55807370	rs464605	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	5q11.2	AC022431.2	rs464605-T	0.745904	1E-11		0.01722868	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1010	chr5	55807369	55807370	rs464605	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	5q11.2	NR	rs464605-T	0.745491	6E-11		0.013835	[0.0097-0.018] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
1010	chr5	55807369	55807370	rs464605	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	24,646 African American cases, 31,446 African American controls	NA	5q11.2	NR	rs464605-C	0.429	1E-9		0.077	[0.052-0.102] unit decrease	Affymetrix, Illumina [945603] (imputed)	N
1010	chr5	55807369	55807370	rs464605	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	5q11.2	NR	rs464605-C	0.3465	8E-66		0.07	[0.062-0.078] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1010	chr5	55807369	55807370	rs464605	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 29,0641 European ancestry controls	NA	5q11.2	AC022431.2	rs464605-C	0.253257	6E-10		0.08615812	[0.059-0.113] unit decrease	Affymetrix [7288503] (imputed)	N
1010	chr5	55807369	55807370	rs464605	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	5q11.2		rs464605-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1010	chr5	55807369	55807370	rs464605	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	5q11.2	intergenic	rs464605-T	0.7251	4E-10		0.1332	[0.091-0.175] mmHg increase	Affymetrix [NR] (imputed)	N
1010	chr5	55807836	55807837	rs458741	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Total cholesterol in chylomicron and extremely large VLDL meal response (OrNLSr)	4,292 individuals	NA	5q11.2		rs458741-C	0.768329167	6E-10		0.172648	[0.12-0.23] unit increase	Illumina [7701709] (imputed)	N
1010	chr5	55807836	55807837	rs458741	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Cholesterol esters in chylomicron and extremely large VLDL meal response (OrNLSr)	4,292 individuals	NA	5q11.2		rs458741-C	0.768329167	1E-9		0.170343	[0.12-0.22] unit increase	Illumina [7701709] (imputed)	N
1010	chr5	55807836	55807837	rs458741	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	5q11.2	AC022431.2	rs458741-C	0.743034	2E-12		0.018085157	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1010	chr5	55807836	55807837	rs458741	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	5q11.2	AC022431.2	rs458741-T	0.742919	3E-11		0.0168206	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1010	chr5	55807836	55807837	rs458741	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	5q11.2		rs458741-?	NR	3E-15				NR [~ 8900000] (imputed)	N
1010	chr5	55808148	55808149	rs245143	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	5q11.2	AC022431.2	rs245143-G	NR	4E-16		0.0383103	[0.029-0.048] unit increase	Affymetrix [323858] (imputed)	N
1010	chr5	55808341	55808342	rs392794	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	5q11.2		rs392794-T	NR	1E-19		0.06	[0.047-0.073] unit increase	Affymetrix, Illumina [25845091] (imputed)	N
1010	chr5	55808341	55808342	rs392794	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	5q11.2		rs392794-T	NR	3E-8		0.0125	[0.008-0.017] unit increase	Affymetrix, Illumina [20535873] (imputed)	N
1010	chr5	55808474	55808475	rs465002	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	5q11.2	C5orf67	rs465002-T	NR	5E-6	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
1010	chr5	55808474	55808475	rs465002	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	5q11.2	C5orf67	rs465002-T	NR	4E-10	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1010	chr5	55808474	55808475	rs465002	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	5q11.2	C5orf67	rs465002-T	NR	1E-16				Affymetrix, Illumina [NR] (imputed)	N
1010	chr5	55808474	55808475	rs465002	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	5q11.2	C5orf67	rs465002-T	NR	6E-8	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1010	chr5	55808474	55808475	rs465002	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	5q11.2	C5orf67	rs465002-T	NR	3E-6	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
1010	chr5	55808474	55808475	rs465002	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	5q11.2	C5orf67	rs465002-T	NR	2E-14				Affymetrix, Illumina [NR] (imputed)	N
1010	chr5	55808474	55808475	rs465002	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	5q11.2	C5orf67	rs465002-T	NR	8E-9		0.01	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1010	chr5	55808474	55808475	rs465002	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	5q11.2	C5orf67	rs465002-T	NR	7E-7		0.009	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1010	chr5	55808474	55808475	rs465002	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	5q11.2	C5orf67	rs465002-T	NR	1E-6	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
1010	chr5	55808474	55808475	rs465002	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	5q11.2	C5orf67	rs465002-T	NR	1E-22				Affymetrix, Illumina [NR] (imputed)	N
1010	chr5	55808474	55808475	rs465002	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	5q11.2	C5orf67	rs465002-T	NR	1E-15	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1010	chr5	55808474	55808475	rs465002	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	5q11.2	C5orf67	rs465002-T	NR	4E-21				Affymetrix, Illumina [NR] (imputed)	N
1010	chr5	55808474	55808475	rs465002	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	5q11.2	C5orf67	rs465002-T	NR	2E-6	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
1010	chr5	55808474	55808475	rs465002	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	5q11.2	C5orf67	rs465002-T	NR	2E-14	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1010	chr5	55808474	55808475	rs465002	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	5q11.2	C5orf67	rs465002-T	NR	8E-6	(Asian)	0.006	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1010	chr5	55808474	55808475	rs465002	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	5q11.2	C5orf67	rs465002-T	NR	8E-12		0.006	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1010	chr5	55808474	55808475	rs465002	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	5q11.2	C5orf67	rs465002-T	NR	2E-6	(EA)	0.006	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1010	chr5	55808474	55808475	rs465002	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	5q11.2	C5orf67	rs465002-T	NR	5E-9		0.006201	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1010	chr5	55808474	55808475	rs465002	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	5q11.2	C5orf67	rs465002-T	NR	3E-6	(EA)	0.008468	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1010	chr5	55808474	55808475	rs465002	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	5q11.2	ANKRD55	rs465002-T	0.7421	6E-38		1.11	[1.09-1.12]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1010	chr5	55808965	55808966	rs157510	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	5q11.2	C5orf67	rs157510-A	0.8266	4E-6		0.0391	[0.022-0.056] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1010	chr5	55809126	55809127	rs157512	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	5q11.2		rs157512-C	NR	8E-16		0.0202	[0.015-0.025] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
1010	chr5	55809126	55809127	rs157512	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	200,622 European ancestry individuals	NA	5q11.2	LOC101928448	rs157512-T	0.7588	5E-10		0.0134	[0.0093-0.0175] unit increase	Affymetrix, Illumina [34064007] (imputed)	N
1010	chr5	55809126	55809127	rs157512	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	5q11.2	AC022431.2	rs157512-C	NR	5E-23		0.035767	[0.029-0.043] unit increase	Affymetrix [323858] (imputed)	N
1010	chr5	55809126	55809127	rs157512	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	High density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	5q11.2	C5orf67	rs157512-?		3E-9		0.0267	[0.018-0.036] unit increase	Illumina [31500000] (imputed)	N
1010	chr5	55809126	55809127	rs157512	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q11.2	NR	rs157512-C	0.286594	5E-17				Affymetrix, Illumina [24588908] (imputed)	N
1010	chr5	55809126	55809127	rs157512	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	5q11.2	NR	rs157512-T	0.762232	1E-8		0.0135817	[0.0089-0.0182] unit decrease	NR [NR]	N
1010	chr5	55809137	55809138	rs256903	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	5q11.2		rs256903-A	NR	7E-10		0.0152	[0.01-0.02] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
1010	chr5	55809137	55809138	rs256903	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	5q11.2		rs256903-A	NR	3E-11		0.0482	[0.034-0.062] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1010	chr5	55809137	55809138	rs256903	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	5q11.2		rs256903-A	NR	3E-10		0.0145	[0.01-0.019] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
1010	chr5	55809137	55809138	rs256903	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	5q11.2	AC022431.2	rs256903-C	NR	1E-24		0.0362253	[0.029-0.043] unit increase	Affymetrix [321114] (imputed)	N
1010	chr5	55809137	55809138	rs256903	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q11.2	NR	rs256903-A	0.684814	5E-19				Affymetrix, Illumina [24653286] (imputed)	N
1010	chr5	55809137	55809138	rs256903	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	5q11.2	ANKRD55	rs256903-A	0.47	2E-16		1.08	1.06-1.09	Illumina [12557761] (imputed)	N
1010	chr5	55809464	55809465	rs173964	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Total cholesterol in very large VLDL meal response (OrNLSr)	4,292 individuals	NA	5q11.2		rs173964-G	0.771823014	1E-8		0.155968	[0.1-0.21] unit increase	Illumina [7701709] (imputed)	N
1010	chr5	55809464	55809465	rs173964	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Phospholipid levels in chylomicrons and extremely large VLDL meal response (OrNLSr)	4,292 individuals	NA	5q11.2		rs173964-G	0.773047526	5E-9		0.16293	[0.11-0.22] unit increase	Illumina [7701709] (imputed)	N
1010	chr5	55809464	55809465	rs173964	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Free cholesterol in very large VLDL meal response (OrNLSr)	4,292 individuals	NA	5q11.2		rs173964-G	0.771823014	2E-8		0.153228	[0.1-0.207] unit increase	Illumina [7701709] (imputed)	N
1010	chr5	55809464	55809465	rs173964	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Free cholesterol in chylomicron and extremely large VLDL meal response (OrNLSr)	4,292 individuals	NA	5q11.2		rs173964-G	0.773034722	4E-9		0.16392	[0.11-0.22] unit increase	Illumina [7701709] (imputed)	N
1010	chr5	55809464	55809465	rs173964	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q11.2	NR	rs173964-G	0.686395	4E-10				Affymetrix, Illumina [24558453] (imputed)	N
1010	chr5	55809464	55809465	rs173964	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	46,511 Asian ancestry cases, 169,776 Asian ancestry controls	NA	5q11.2	NR	rs173964-G	0.4696	1E-16		0.0725	[0.055-0.09] unit increase	Affymetrix, Illumina [1077427] (imputed)	N
1010	chr5	55810304	55810305	rs256904	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	5q11.2		rs256904-T	0.464865009	4E-12		0.06375707	[0.046-0.082] unit increase	Illumina [13429769] (imputed)	N
1010	chr5	55810304	55810305	rs256904	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	5q11.2		rs256904-T	0.469242	1E-8		0.0188745	[0.012-0.025] unit decrease	Illumina [13478928] (imputed)	N
1010	chr5	55810304	55810305	rs256904	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	5q11.2		rs256904-T	0.468754911	5E-11		0.06483371	[0.046-0.084] unit increase	Illumina [13134967] (imputed)	N
1010	chr5	55810304	55810305	rs256904	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q11.2	NR	rs256904-A	0.260718	1E-24				Affymetrix, Illumina [22063850] (imputed)	N
1010	chr5	55810304	55810305	rs256904	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	5q11.2	NR	rs256904-A	0.25369	9E-23		0.021155	[0.017-0.025] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
1010	chr5	55810304	55810305	rs256904	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	5q11.2	NR	rs256904-T	0.7297	3E-39		0.0692	[0.059-0.08] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1010	chr5	55810304	55810305	rs256904	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	5q11.2	ANKRD55	rs256904-T	0.492	4E-29		1.08	[1.06-1.09]	Affymetrix, Illumina [11800000] (imputed)	N
1010	chr5	55810304	55810305	rs256904	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	5q11.2	intergenic	rs256904-A	0.2766	3E-12		0.206	[0.15-0.26] mmHg decrease	Affymetrix [NR] (imputed)	N
1010	chr5	55810448	55810449	rs245142	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	5q11.2	AC022431.2	rs245142-A	NR	6E-13		0.0283038	[0.021-0.036] unit increase	Affymetrix [319769] (imputed)	N
1010	chr5	55810448	55810449	rs245142	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	5q11.2	AC022431.2	rs245142-A	NR	6E-14		0.0295267	[0.022-0.037] unit increase	Affymetrix [319769] (imputed)	N
1010	chr5	55810448	55810449	rs245142	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	5q11.2	AC022431.2	rs245142-A	NR	5E-11		0.026038	[0.018-0.034] unit increase	Affymetrix [321114] (imputed)	N
1010	chr5	55810448	55810449	rs245142	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	5q11.2	AC022431.2	rs245142-A	NR	2E-8		0.0224836	[0.015-0.03] unit increase	Affymetrix [321169] (imputed)	N
1010	chr5	55811091	55811092	rs456867	23263486	Kottgen A	2012-12-23	Nat Genet	Genome-wide association analyses identify 18 new loci associated with serum urate concentrations.	Urate levels	49,825 European ancestry males, 60,522 European ancestry females	Up to 32,813 European ancestry individuals	5q11.2	ANKRD55	rs456867-T	0.17	3E-6	(women)	0.038	[0.022-0.054] mg/dl decrease	Affymetrix, Illumina, Perlegen [2450547] (imputed)	N
1010	chr5	55811345	55811346	rs467367	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	5q11.2	AC022431.2	rs467367-C	NR	3E-18		0.0275254	[0.021-0.034] unit increase	Affymetrix [323858] (imputed)	N
1010	chr5	55811345	55811346	rs467367	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	5q11.2	AC022431.2	rs467367-C	NR	1E-8		0.0162124	[0.011-0.022] unit increase	Affymetrix [319769] (imputed)	N
1010	chr5	55811345	55811346	rs467367	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	5q11.2	AC022431.2	rs467367-C	NR	3E-19		0.0283563	[0.022-0.035] unit increase	Affymetrix [127266] (imputed)	N
1010	chr5	55811345	55811346	rs467367	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	5q11.2	AC022431.2	rs467367-C	NR	3E-9		0.0170035	[0.011-0.023] unit increase	Affymetrix [321114] (imputed)	N
1010	chr5	55811345	55811346	rs467367	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	5q11.2	AC022431.2	rs467367-C	NR	3E-17		0.0263453	[0.02-0.032] unit increase	Affymetrix [321114] (imputed)	N
1010	chr5	55811345	55811346	rs467367	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	5q11.2	AC022431.2	rs467367-C	NR	1E-15		0.0249907	[0.019-0.031] unit increase	Affymetrix [323858] (imputed)	N
1010	chr5	55812129	55812130	rs465983	34951656	Downie CG	2021-12-24	Diabetologia	Multi-ethnic GWAS and fine-mapping of glycaemic traits identify novel loci in the PAGE Study.	Glycated haemoglobin HbA1c levels adjusted for BMI	9,228 European ancestry individuals	NA	5q11.2		rs465983-A	0.24180000000000001	1E-9		0.0736	[0.05-0.097] unit increase	Affymetrix, Illumina [23060038] (imputed)	N
1010	chr5	55812129	55812130	rs465983	34951656	Downie CG	2021-12-24	Diabetologia	Multi-ethnic GWAS and fine-mapping of glycaemic traits identify novel loci in the PAGE Study.	Fasting insulin adjusted for BMI	48,395 European ancestry, African American or Afro-Caribbean, Hispanic or Latin American, Asian ancestry, Other ancestry, Native American ancestry individuals	NA	5q11.2		rs465983-A	0.2773	3E-16		0.06	[0.045-0.075] unit increase	Affymetrix, Illumina [28462191] (imputed)	N
1010	chr5	55812129	55812130	rs465983	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	5q11.2	AC022431.2	rs465983-G	NR	4E-18		0.0287373	[0.022-0.035] unit increase	Affymetrix [319769] (imputed)	N
1010	chr5	55812129	55812130	rs465983	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	5q11.2	AC022431.2	rs465983-G	NR	5E-30		0.0417558	[0.035-0.049] unit increase	Affymetrix [323858] (imputed)	N
1010	chr5	55812129	55812130	rs465983	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	5q11.2	AC022431.2	rs465983-G	NR	4E-19		0.0296541	[0.023-0.036] unit increase	Affymetrix [319769] (imputed)	N
1010	chr5	55812129	55812130	rs465983	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	5q11.2	AC022431.2	rs465983-G	NR	2E-31		0.0426969	[0.036-0.05] unit increase	Affymetrix [127266] (imputed)	N
1010	chr5	55812129	55812130	rs465983	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	5q11.2	AC022431.2	rs465983-G	NR	4E-14		0.0252509	[0.019-0.032] unit increase	Affymetrix [321114] (imputed)	N
1010	chr5	55812129	55812130	rs465983	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	5q11.2	AC022431.2	rs465983-G	NR	2E-9		0.0206808	[0.014-0.027] unit decrease	Affymetrix [321788] (imputed)	N
1010	chr5	55812129	55812130	rs465983	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	5q11.2	AC022431.2	rs465983-G	NR	5E-10		0.0207846	[0.014-0.027] unit increase	Affymetrix [321169] (imputed)	N
1010	chr5	55812129	55812130	rs465983	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	5q11.2	C5orf67	rs465983-A	0.7642	5E-12		0.0153	[0.011-0.02] unit increase	Affymetrix [18391927] (imputed)	N
1010	chr5	55812129	55812130	rs465983	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	5q11.2	intergenic	rs465983-G	0.241951	2E-18	(females)	0.0291	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1010	chr5	55812129	55812130	rs465983	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	5q11.2	intergenic	rs465983-G	0.241951	1E-19		0.02357	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1010	chr5	55812129	55812130	rs465983	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	5q11.2	intergenic	rs465983-G	0.241951	5E-14	(females)	0.02546	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1010	chr5	55812129	55812130	rs465983	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	5q11.2	intergenic	rs465983-G	0.241951	2E-16		0.02147	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1010	chr5	55812129	55812130	rs465983	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	5q11.2		rs465983-?	NR	3E-50				NR [~ 8900000] (imputed)	N
1010	chr5	55812379	55812380	rs72754154	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in VLDL	115,082 European ancestry individuals	NA	5q11.2		rs72754154-G	0.949547	5E-8		0.0495517	[0.032-0.067] unit increase	NR [11722792] (imputed)	N
1010	chr5	55812379	55812380	rs72754154	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large VLDL	115,082 European ancestry individuals	NA	5q11.2		rs72754154-G	0.949547	5E-8		0.0495914	[0.032-0.067] unit increase	NR [11722792] (imputed)	N
1010	chr5	55812379	55812380	rs72754154	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycine levels	114,978 European ancestry individuals	NA	5q11.2		rs72754154-G	0.949536	3E-8		0.0494337	[0.032-0.067] unit decrease	NR [11722792] (imputed)	N
1010	chr5	55812379	55812380	rs72754154	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	5q11.2		rs72754154-G	0.949547	4E-8		0.0502247	[0.032-0.068] unit increase	NR [11722792] (imputed)	N
1010	chr5	55812379	55812380	rs72754154	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large VLDL particles	115,082 European ancestry individuals	NA	5q11.2		rs72754154-G	0.949547	3E-8		0.0501957	[0.032-0.068] unit increase	NR [11722792] (imputed)	N
1010	chr5	55812379	55812380	rs72754154	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large VLDL particles	115,082 European ancestry individuals	NA	5q11.2		rs72754154-G	0.949547	4E-8		0.0498491	[0.032-0.068] unit increase	NR [11722792] (imputed)	N
1010	chr5	55812379	55812380	rs72754154	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	5q11.2		rs72754154-G	0.949547	3E-8		0.0508092	[0.033-0.069] unit increase	NR [11722792] (imputed)	N
1010	chr5	55812379	55812380	rs72754154	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	5q11.2		rs72754154-G	0.949547	4E-8		0.0501638	[0.032-0.068] unit increase	NR [11722792] (imputed)	N
1010	chr5	55812681	55812682	rs2448427	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	5q11.2	AC022431.2	rs2448427-T	NR	9E-9		0.0280574	[0.018-0.038] unit increase	Affymetrix [319769] (imputed)	N
1010	chr5	55812681	55812682	rs2448427	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	5q11.2	AC022431.2	rs2448427-T	NR	3E-9		0.0288872	[0.019-0.038] unit increase	Affymetrix [319769] (imputed)	N
1010	chr5	55814088	55814089	rs7710066	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	5q11.2		rs7710066-C	0.948233	2E-8		0.0484382	[0.032-0.065] unit increase	NR [11722792] (imputed)	N
1010	chr5	55814889	55814890	rs61587941	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large VLDL	115,082 European ancestry individuals	NA	5q11.2		rs61587941-G	0.948758	4E-8		0.0492147	[0.032-0.067] unit increase	NR [11722792] (imputed)	N
1010	chr5	55814889	55814890	rs61587941	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for VLDL particles	115,082 European ancestry individuals	NA	5q11.2		rs61587941-G	0.948758	7E-9		0.0505797	[0.033-0.068] unit increase	NR [11722792] (imputed)	N
1010	chr5	55814889	55814890	rs61587941	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	5q11.2	NR	rs61587941-A	NR	2E-10		0.0349	[0.024-0.046] unit increase	Affymetrix [9000000] (imputed)	N
1010	chr5	55814889	55814890	rs61587941	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	5q11.2	NR	rs61587941-A	NR	3E-10		0.0329	[0.023-0.043] unit increase	Affymetrix [9000000] (imputed)	N
1010	chr5	55815891	55815892	rs458356	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	5q11.2	AC022431.2	rs458356-A	0.236286	7E-12		0.05070764	[0.036-0.065] unit decrease	Affymetrix [7288503] (imputed)	N
1010	chr5	55816887	55816888	rs455660	35132056	Mitchell BL	2022-02-07	Nat Commun	Genome-wide association meta-analysis identifies 29 new acne susceptibility loci.	acne vulgaris	20,165 European ancestry cases, 595,231 European ancestry controls	NA	5q11.2	NR	rs455660-C	0.8215	1E-8		1.09	[1.06-1.12]	Affymetrix, Illumina [7072771] (imputed)	N
1010	chr5	55816887	55816888	rs455660	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	5q11.2	AC022431.2	rs455660-T	NR	4E-23		0.0397325	[0.032-0.048] unit increase	Affymetrix [323858] (imputed)	N
1010	chr5	55816887	55816888	rs455660	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	5q11.2	AC022431.2	rs455660-T	NR	6E-24		0.0405486	[0.033-0.048] unit increase	Affymetrix [127266] (imputed)	N
1010	chr5	55816887	55816888	rs455660	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	5q11.2	NR	rs455660-?	NR	7E-30				Affymetrix [~ 8270000] (imputed)	N
1010	chr5	55816887	55816888	rs455660	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	5q11.2	NR	rs455660-?	NR	3E-27				Affymetrix [~ 8270000] (imputed)	N
1010	chr5	55816887	55816888	rs455660	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	315,284 European ancestry male individuals	NA	5q11.2	NR	rs455660-T	0.1771	2E-37		0.0279	[0.024-0.032] unit increase	NR [~ 27400000] (imputed)	N
1010	chr5	55816887	55816888	rs455660	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	316,772 European ancestry male individuals	NA	5q11.2	NR	rs455660-T	0.1768	2E-28		0.0238	[0.019-0.028] unit increase	NR [~ 27400000] (imputed)	N
1010	chr5	55816887	55816888	rs455660	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	5q11.2	MAP3K1	rs455660-T	0.1962	2E-6	(men)	0.035	[0.02-0.05] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1010	chr5	55816887	55816888	rs455660	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	5q11.2	ANKRD55	rs455660-T	0.1962	2E-9		0.0275	[0.018-0.037] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1010	chr5	55816887	55816888	rs455660	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	5q11.2	MAP3K1	rs455660-T	0.1962	5E-7		0.0285	[0.017-0.04] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1010	chr5	55816887	55816888	rs455660	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	5q11.2	ANKRD55	rs455660-T	0.1975	5E-6	(men)	0.0378	[0.022-0.054] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1010	chr5	55816887	55816888	rs455660	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	5q11.2	ANKRD55	rs455660-?	0.1962	4E-7				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1010	chr5	55819246	55819247	rs112935789	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	5q11.2	NR	rs112935789-?	NR	4E-10				Affymetrix [~ 8270000] (imputed)	N
1010	chr5	55819246	55819247	rs112935789	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	5q11.2	NR	rs112935789-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
1010	chr5	55820583	55820584	rs154254	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	5q11.2	AC022431.2	rs154254-G	NR	7E-9		0.0184641	[0.012-0.025] unit increase	Affymetrix [323858] (imputed)	N
1010	chr5	55820583	55820584	rs154254	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	5q11.2	AC022431.2	rs154254-G	NR	2E-9		0.0190874	[0.013-0.025] unit increase	Affymetrix [127266] (imputed)	N
1010	chr5	55820583	55820584	rs154254	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	5q11.2	AC022431.2	rs154254-G	NR	2E-8		0.0176437	[0.011-0.024] unit increase	Affymetrix [321114] (imputed)	N
1010	chr5	55820583	55820584	rs154254	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Triglyceride levels	105,597 Japanese ancestry individuals	NA	5q11.2	C5orf67	rs154254-?	NR	8E-9		0.0253	[0.017-0.034] unit increase novel	Illumina [6108953] (imputed)	N
1010	chr5	55828635	55828636	rs40565	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	5q11.2	NR	rs40565-T	NR	1E-12		0.0219	[0.016-0.028] unit increase	Affymetrix [9000000] (imputed)	N
1010	chr5	55829594	55829595	rs34884999	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	5q11.2	NR	rs34884999-?	NR	5E-21				Affymetrix [~ 8270000] (imputed)	N
1010	chr5	55829594	55829595	rs34884999	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	5q11.2	NR	rs34884999-?	NR	4E-15				Affymetrix [~ 8270000] (imputed)	N
1010	chr5	55832216	55832217	rs11949724	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	5q11.2	NR	rs11949724-A	NR	2E-9		0.0149	[0.01-0.0198] unit increase	Affymetrix [9000000] (imputed)	N
1010	chr5	55832425	55832426	rs11957177	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	5q11.2	AC022431.2, AC022431.3	rs11957177-T	NR	9E-21		0.0382352	[0.03-0.046] unit increase	Affymetrix [319769] (imputed)	N
1010	chr5	55832425	55832426	rs11957177	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	5q11.2	AC022431.2, AC022431.3	rs11957177-T	NR	8E-22		0.0392528	[0.031-0.047] unit increase	Affymetrix [319769] (imputed)	N
1010	chr5	55832425	55832426	rs11957177	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	5q11.2	AC022431.2, AC022431.3	rs11957177-T	NR	2E-19		0.0371069	[0.029-0.045] unit increase	Affymetrix [321114] (imputed)	N
1010	chr5	55832425	55832426	rs11957177	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	5q11.2	AC022431.2, AC022431.3	rs11957177-T	NR	7E-21		0.038709	[0.031-0.047] unit increase	Affymetrix [321169] (imputed)	N
1010	chr5	55833518	55833519	rs30360	24204828	Zheng JS	2013-10-28	PLoS One	Genome-wide contribution of genotype by environment interaction to variation of diabetes-related traits.	Homeostasis model assessment of insulin resistance (dietary factor interaction)	820 European ancestry individuals	NA	5q11.2	LOC441073, MAP3K1	rs30360-G	0.293	1E-6	(Carbohydrate)			Affymetrix [590000]	N
1010	chr5	55833518	55833519	rs30360	24204828	Zheng JS	2013-10-28	PLoS One	Genome-wide contribution of genotype by environment interaction to variation of diabetes-related traits.	Fasting insulin (dietary factor interaction)	820 European ancestry individuals	NA	5q11.2	LOC441073, MAP3K1	rs30360-G	0.293	9E-7	(Carbohydrate)			Affymetrix [590000]	N
1010	chr5	55833891	55833892	rs3900856	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	5q11.2	AC022431.2	rs3900856-A	NR	3E-18		0.0634025	[0.049-0.078] unit increase	Affymetrix [319769] (imputed)	N
1010	chr5	55833891	55833892	rs3900856	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	5q11.2	AC022431.2	rs3900856-A	NR	7E-19		0.0645616	[0.05-0.079] unit increase	Affymetrix [319769] (imputed)	N
1010	chr5	55833891	55833892	rs3900856	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	5q11.2	AC022431.2	rs3900856-A	NR	1E-17		0.0626505	[0.048-0.077] unit increase	Affymetrix [321114] (imputed)	N
1010	chr5	55833891	55833892	rs3900856	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	5q11.2	AC022431.2	rs3900856-A	NR	4E-21		0.0694683	[0.055-0.084] unit increase	Affymetrix [321169] (imputed)	N
1010	chr5	55833891	55833892	rs3900856	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	5q11.2	C5orf67	rs3900856-A	0.0392350361553793	7E-10		0.1136	[0.077-0.15] unit increase	NR [5035015] (imputed)	N
1011	chr5	55838484	55838485	rs157518	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	5q11.2	NR	rs157518-?	NR	1E-17				Affymetrix [~ 8270000] (imputed)	N
1011	chr5	55840392	55840393	rs71624136	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	5q11.2	AC022431.2	rs71624136-A	NR	2E-11		0.0804959	[0.057-0.104] unit increase	Affymetrix [319769] (imputed)	N
1011	chr5	55840392	55840393	rs71624136	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	5q11.2	AC022431.2	rs71624136-A	NR	6E-12		0.082288	[0.059-0.106] unit increase	Affymetrix [319769] (imputed)	N
1011	chr5	55840392	55840393	rs71624136	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	5q11.2	AC022431.2	rs71624136-A	NR	1E-9		0.0731214	[0.049-0.097] unit increase	Affymetrix [321114] (imputed)	N
1011	chr5	55840392	55840393	rs71624136	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	5q11.2	AC022431.2	rs71624136-A	NR	9E-12		0.0825763	[0.059-0.106] unit increase	Affymetrix [321169] (imputed)	N
1011	chr5	55840392	55840393	rs71624136	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	5q11.2	NR	rs71624136-A	NR	4E-10		0.0646	[0.044-0.085] unit increase	Affymetrix [9000000] (imputed)	N
1011	chr5	55845381	55845382	rs464650	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	5q11.2		rs464650-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1011	chr5	55846919	55846919	rs35903051	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	5q11.2	AC022431.2	rs35903051-TA	NR	1E-12		0.0203159	[0.015-0.026] unit decrease	Affymetrix [319769] (imputed)	N
1011	chr5	55846919	55846919	rs35903051	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	5q11.2	AC022431.2	rs35903051-TA	NR	2E-13		0.0210769	[0.015-0.027] unit decrease	Affymetrix [319769] (imputed)	N
1011	chr5	55846919	55846919	rs35903051	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	5q11.2	AC022431.2	rs35903051-TA	NR	2E-14		0.0220882	[0.016-0.028] unit decrease	Affymetrix [321114] (imputed)	N
1011	chr5	55846919	55846919	rs35903051	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	5q11.2	AC022431.2	rs35903051-TA	NR	1E-13		0.0214727	[0.016-0.027] unit decrease	Affymetrix [321169] (imputed)	N
1011	chr5	55848668	55848669	rs2431115	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	5q11.2	ANKRD55	rs2431115-A	0.4015	4E-10		1.04	[1.03-1.06]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1011	chr5	55848971	55848972	rs30353	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	5q11.2	NR	rs30353-?	NR	3E-17				Affymetrix [~ 8270000] (imputed)	N
1011	chr5	55851317	55851318	rs115418828	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	5q11.2	AC022431.2	rs115418828-G	NR	3E-12		0.0498532	[0.036-0.064] unit increase	Affymetrix [319769] (imputed)	N
1011	chr5	55851317	55851318	rs115418828	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	5q11.2	AC022431.2	rs115418828-G	NR	1E-12		0.0508148	[0.037-0.065] unit increase	Affymetrix [319769] (imputed)	N
1011	chr5	55851317	55851318	rs115418828	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	5q11.2	AC022431.2	rs115418828-G	NR	6E-16		0.058255	[0.044-0.072] unit increase	Affymetrix [321114] (imputed)	N
1011	chr5	55851317	55851318	rs115418828	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	5q11.2	AC022431.2	rs115418828-G	NR	9E-15		0.05596	[0.042-0.07] unit increase	Affymetrix [321169] (imputed)	N
1011	chr5	55853720	55853721	rs621127	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	5q11.2	AC022431.2	rs621127-T	NR	6E-18		0.0248192	[0.019-0.03] unit increase	Affymetrix [319769] (imputed)	N
1011	chr5	55853720	55853721	rs621127	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	5q11.2	AC022431.2	rs621127-T	NR	7E-19		0.0254737	[0.02-0.031] unit increase	Affymetrix [319769] (imputed)	N
1011	chr5	55853720	55853721	rs621127	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	5q11.2	AC022431.2	rs621127-T	NR	4E-19		0.0258748	[0.02-0.032] unit increase	Affymetrix [321114] (imputed)	N
1011	chr5	55853720	55853721	rs621127	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	5q11.2	AC022431.2	rs621127-T	NR	3E-17		0.0245355	[0.019-0.03] unit increase	Affymetrix [321169] (imputed)	N
1011	chr5	55854152	55854153	rs6867983	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	5q11.2	AC022431.2	rs6867983-T	NR	2E-40		0.054135	[0.046-0.062] unit increase	Affymetrix [319769] (imputed)	N
1011	chr5	55854152	55854153	rs6867983	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	5q11.2	AC022431.2	rs6867983-T	NR	2E-41		0.0547623	[0.047-0.063] unit increase	Affymetrix [319769] (imputed)	N
1011	chr5	55854152	55854153	rs6867983	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	5q11.2	AC022431.2	rs6867983-T	NR	1E-44		0.0574572	[0.049-0.065] unit increase	Affymetrix [321114] (imputed)	N
1011	chr5	55854152	55854153	rs6867983	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	5q11.2	AC022431.2	rs6867983-T	NR	5E-47		0.0591011	[0.051-0.067] unit increase	Affymetrix [321169] (imputed)	N
1011	chr5	55854152	55854153	rs6867983	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-to-hip ratio adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,049 whole genome sequenced individuals, 29,518 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,001 Mylopotamos (founder/genetic isolate) individuals, 867 Pomak (founder/genetic isolate) individuals	206,045 European ancestry individuals	5q11.2	C5orf67	rs6867983-T	0.1368	6E-6		0.0536	[0.03-0.077] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1011	chr5	55854152	55854153	rs6867983	23966867	Liu CT	2013-08-15	PLoS Genet	Genome-wide association of body fat distribution in African ancestry populations suggests new loci.	Waist circumference	Up to 23,564 African American individuals	Up to 10,027 African American individuals	5q11.2	MAP3K1	rs6867983-T	0.24	1E-7	(men)	0.09	[0.051-0.129] unit decrease	Affymetrix, Illumina [3200000] (imputed)	N
1011	chr5	55854152	55854153	rs6867983	20864672	Waterworth DM	2010-09-23	Arterioscler Thromb Vasc Biol	Genetic variants influencing circulating lipid levels and risk of coronary artery disease.	Triglycerides	up to 17,723 European ancestry individuals	up to 37,774 European ancestry individuals, up to 9,665 Indian Asian ancestry individuals	5q11.2	C5orf35	rs6867983-T	0.12	3E-6		0.02	[0.01-0.03] unit increase	Affymetrix, Illumina, Perlegen [2155369] (imputed)	N
1011	chr5	55856374	55856375	rs3843467	29358691	Bonas-Guarch S	2018-01-22	Nat Commun	Re-analysis of public genetic data reveals a rare X-chromosomal variant associated with type 2 diabetes.	Type 2 diabetes	up to 12,931 European ancestry cases, up to 57,196 European ancestry controls	NA	5q11.2	ANKRD55	rs3843467-T	NR	2E-10		1.1300931		Affymetrix, Illumina [~ 13000000] (imputed)	N
1011	chr5	55856374	55856375	rs3843467	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	5q11.2	MAP3K1	rs3843467-T	0.1943	1E-9	(EA)	0.0289	[0.019-0.038] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1011	chr5	55856374	55856375	rs3843467	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	5q11.2	MAP3K1	rs3843467-T	0.1943	6E-8	(EA)	0.0296	[0.019-0.04] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1011	chr5	55856374	55856375	rs3843467	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	5q11.2	MAP3K1	rs3843467-?	0.1943	3E-9	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1011	chr5	55857025	55857025	rs11429307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	5q11.2		rs11429307-G	0.808483	3E-22		0.0482476	[0.038-0.058] unit decrease	NR [11722792] (imputed)	N
1011	chr5	55857025	55857025	rs11429307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	5q11.2		rs11429307-G	0.808476	1E-32		0.0587569	[0.049-0.068] unit decrease	NR [11722792] (imputed)	N
1011	chr5	55857025	55857025	rs11429307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	5q11.2		rs11429307-G	0.808483	2E-20		0.047011	[0.037-0.057] unit decrease	NR [11722792] (imputed)	N
1011	chr5	55857025	55857025	rs11429307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	5q11.2		rs11429307-G	0.808483	6E-32		0.0586887	[0.049-0.068] unit decrease	NR [11722792] (imputed)	N
1011	chr5	55857025	55857025	rs11429307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	5q11.2		rs11429307-G	0.808483	3E-17		0.0418767	[0.032-0.052] unit decrease	NR [11722792] (imputed)	N
1011	chr5	55857025	55857025	rs11429307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	5q11.2		rs11429307-G	0.808483	1E-27		0.0547782	[0.045-0.065] unit decrease	NR [11722792] (imputed)	N
1011	chr5	55857025	55857025	rs11429307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	5q11.2		rs11429307-G	0.808483	2E-27		0.0537353	[0.044-0.063] unit decrease	NR [11722792] (imputed)	N
1011	chr5	55857025	55857025	rs11429307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very small VLDL	115,082 European ancestry individuals	NA	5q11.2		rs11429307-G	0.808483	6E-26		0.0539734	[0.044-0.064] unit decrease	NR [11722792] (imputed)	N
1011	chr5	55857025	55857025	rs11429307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large VLDL	115,082 European ancestry individuals	NA	5q11.2		rs11429307-G	0.808483	1E-30		0.0579283	[0.048-0.068] unit decrease	NR [11722792] (imputed)	N
1011	chr5	55857025	55857025	rs11429307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small VLDL	115,082 European ancestry individuals	NA	5q11.2		rs11429307-G	0.808483	4E-31		0.0589185	[0.049-0.069] unit decrease	NR [11722792] (imputed)	N
1011	chr5	55857025	55857025	rs11429307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small LDL	115,082 European ancestry individuals	NA	5q11.2		rs11429307-G	0.808483	8E-27		0.0547262	[0.045-0.065] unit decrease	NR [11722792] (imputed)	N
1011	chr5	55857025	55857025	rs11429307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small HDL	115,082 European ancestry individuals	NA	5q11.2		rs11429307-G	0.808483	3E-32		0.0600888	[0.05-0.07] unit decrease	NR [11722792] (imputed)	N
1011	chr5	55857025	55857025	rs11429307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium VLDL	115,082 European ancestry individuals	NA	5q11.2		rs11429307-G	0.808483	2E-26		0.0543374	[0.044-0.064] unit decrease	NR [11722792] (imputed)	N
1011	chr5	55857025	55857025	rs11429307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium LDL	115,082 European ancestry individuals	NA	5q11.2		rs11429307-G	0.808483	8E-23		0.0505285	[0.04-0.061] unit decrease	NR [11722792] (imputed)	N
1011	chr5	55857025	55857025	rs11429307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium HDL	115,082 European ancestry individuals	NA	5q11.2		rs11429307-G	0.808483	4E-17		0.0434474	[0.033-0.054] unit decrease	NR [11722792] (imputed)	N
1011	chr5	55857025	55857025	rs11429307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large VLDL	115,082 European ancestry individuals	NA	5q11.2		rs11429307-G	0.808483	1E-26		0.0540878	[0.044-0.064] unit decrease	NR [11722792] (imputed)	N
1011	chr5	55857025	55857025	rs11429307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large LDL	115,082 European ancestry individuals	NA	5q11.2		rs11429307-G	0.808483	1E-17		0.0441261	[0.034-0.054] unit decrease	NR [11722792] (imputed)	N
1011	chr5	55857025	55857025	rs11429307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	5q11.2		rs11429307-G	0.808483	4E-22		0.0490888	[0.039-0.059] unit decrease	NR [11722792] (imputed)	N
1011	chr5	55857025	55857025	rs11429307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in VLDL	115,082 European ancestry individuals	NA	5q11.2		rs11429307-G	0.808483	1E-29		0.0571537	[0.047-0.067] unit decrease	NR [11722792] (imputed)	N
1011	chr5	55857025	55857025	rs11429307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in LDL	115,082 European ancestry individuals	NA	5q11.2		rs11429307-G	0.808483	2E-20		0.0476913	[0.038-0.058] unit decrease	NR [11722792] (imputed)	N
1011	chr5	55857025	55857025	rs11429307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in IDL	115,082 European ancestry individuals	NA	5q11.2		rs11429307-G	0.808483	7E-19		0.0455489	[0.035-0.056] unit decrease	NR [11722792] (imputed)	N
1011	chr5	55857025	55857025	rs11429307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in HDL	115,082 European ancestry individuals	NA	5q11.2		rs11429307-G	0.808483	2E-17		0.0438556	[0.034-0.054] unit decrease	NR [11722792] (imputed)	N
1011	chr5	55857025	55857025	rs11429307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total triglycerides levels	115,082 European ancestry individuals	NA	5q11.2		rs11429307-G	0.808483	3E-29		0.0570441	[0.047-0.067] unit decrease	NR [11722792] (imputed)	N
1011	chr5	55857025	55857025	rs11429307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large VLDL	115,082 European ancestry individuals	NA	5q11.2		rs11429307-G	0.808483	2E-29		0.0570556	[0.047-0.067] unit decrease	NR [11722792] (imputed)	N
1011	chr5	55857025	55857025	rs11429307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large HDL	115,082 European ancestry individuals	NA	5q11.2		rs11429307-G	0.808483	5E-20		0.0434084	[0.034-0.053] unit increase	NR [11722792] (imputed)	N
1011	chr5	55857025	55857025	rs11429307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small VLDL	115,082 European ancestry individuals	NA	5q11.2		rs11429307-G	0.808483	2E-22		0.050619	[0.04-0.061] unit decrease	NR [11722792] (imputed)	N
1011	chr5	55857025	55857025	rs11429307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium VLDL	115,082 European ancestry individuals	NA	5q11.2		rs11429307-G	0.808483	2E-16		0.0429047	[0.033-0.053] unit decrease	NR [11722792] (imputed)	N
1011	chr5	55857025	55857025	rs11429307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large VLDL	115,082 European ancestry individuals	NA	5q11.2		rs11429307-G	0.808483	1E-27		0.0552631	[0.045-0.065] unit decrease	NR [11722792] (imputed)	N
1011	chr5	55857025	55857025	rs11429307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	5q11.2		rs11429307-G	0.808483	2E-22		0.0449221	[0.036-0.054] unit increase	NR [11722792] (imputed)	N
1011	chr5	55857025	55857025	rs11429307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	5q11.2		rs11429307-G	0.808483	5E-25		0.0522913	[0.042-0.062] unit decrease	NR [11722792] (imputed)	N
1011	chr5	55857025	55857025	rs11429307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in VLDL	115,082 European ancestry individuals	NA	5q11.2		rs11429307-G	0.808483	3E-24		0.0523643	[0.042-0.062] unit decrease	NR [11722792] (imputed)	N
1011	chr5	55857025	55857025	rs11429307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total fatty acid levels	115,006 European ancestry individuals	NA	5q11.2		rs11429307-G	0.808505	3E-11		0.0345251	[0.024-0.045] unit decrease	NR [11722792] (imputed)	N
1011	chr5	55857025	55857025	rs11429307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Saturated fatty acid levels	115,006 European ancestry individuals	NA	5q11.2		rs11429307-G	0.808505	6E-11		0.0339696	[0.024-0.044] unit decrease	NR [11722792] (imputed)	N
1011	chr5	55857025	55857025	rs11429307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	5q11.2		rs11429307-G	0.808505	1E-33		0.0589935	[0.049-0.069] unit decrease	NR [11722792] (imputed)	N
1011	chr5	55857025	55857025	rs11429307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	5q11.2		rs11429307-G	0.808505	3E-15		0.0398522	[0.03-0.05] unit increase	NR [11722792] (imputed)	N
1011	chr5	55857025	55857025	rs11429307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to monounsaturated fatty acids	115,006 European ancestry individuals	NA	5q11.2		rs11429307-G	0.808505	4E-19		0.0451157	[0.035-0.055] unit increase	NR [11722792] (imputed)	N
1011	chr5	55857025	55857025	rs11429307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	5q11.2		rs11429307-G	0.808505	1E-18		0.0445358	[0.035-0.054] unit increase	NR [11722792] (imputed)	N
1011	chr5	55857025	55857025	rs11429307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of monounsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	5q11.2		rs11429307-G	0.808505	3E-19		0.0453101	[0.035-0.055] unit decrease	NR [11722792] (imputed)	N
1011	chr5	55857025	55857025	rs11429307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	5q11.2		rs11429307-G	0.808476	4E-16		0.0393173	[0.03-0.049] unit increase	NR [11722792] (imputed)	N
1011	chr5	55857025	55857025	rs11429307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	5q11.2		rs11429307-G	0.808483	5E-11		0.0345626	[0.024-0.045] unit increase	NR [11722792] (imputed)	N
1011	chr5	55857025	55857025	rs11429307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	5q11.2		rs11429307-G	0.808483	8E-24		0.0502399	[0.04-0.06] unit decrease	NR [11722792] (imputed)	N
1011	chr5	55857025	55857025	rs11429307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	5q11.2		rs11429307-G	0.808487	2E-23		0.0510115	[0.041-0.061] unit decrease	NR [11722792] (imputed)	N
1011	chr5	55857025	55857025	rs11429307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large VLDL	115,082 European ancestry individuals	NA	5q11.2		rs11429307-G	0.808483	6E-28		0.0555455	[0.046-0.065] unit decrease	NR [11722792] (imputed)	N
1011	chr5	55857025	55857025	rs11429307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large HDL	115,082 European ancestry individuals	NA	5q11.2		rs11429307-G	0.808483	2E-20		0.0437728	[0.034-0.053] unit increase	NR [11722792] (imputed)	N
1011	chr5	55857025	55857025	rs11429307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small VLDL	115,082 European ancestry individuals	NA	5q11.2		rs11429307-G	0.808483	3E-14		0.03995	[0.03-0.05] unit decrease	NR [11722792] (imputed)	N
1011	chr5	55857025	55857025	rs11429307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium VLDL	115,082 European ancestry individuals	NA	5q11.2		rs11429307-G	0.808483	2E-11		0.0353071	[0.025-0.046] unit decrease	NR [11722792] (imputed)	N
1011	chr5	55857025	55857025	rs11429307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large VLDL	115,082 European ancestry individuals	NA	5q11.2		rs11429307-G	0.808483	1E-29		0.057314	[0.047-0.067] unit decrease	NR [11722792] (imputed)	N
1011	chr5	55857025	55857025	rs11429307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large HDL	115,082 European ancestry individuals	NA	5q11.2		rs11429307-G	0.808483	3E-20		0.042734	[0.034-0.052] unit increase	NR [11722792] (imputed)	N
1011	chr5	55857025	55857025	rs11429307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	5q11.2		rs11429307-G	0.808483	2E-27		0.0547066	[0.045-0.065] unit decrease	NR [11722792] (imputed)	N
1011	chr5	55857025	55857025	rs11429307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in VLDL	115,082 European ancestry individuals	NA	5q11.2		rs11429307-G	0.808483	2E-21		0.0494229	[0.039-0.06] unit decrease	NR [11722792] (imputed)	N
1011	chr5	55857025	55857025	rs11429307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Monounsaturated fatty acid levels	115,006 European ancestry individuals	NA	5q11.2		rs11429307-G	0.808505	9E-17		0.0431169	[0.033-0.053] unit decrease	NR [11722792] (imputed)	N
1011	chr5	55857025	55857025	rs11429307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	HDL cholesterol levels	115,082 European ancestry individuals	NA	5q11.2		rs11429307-G	0.808483	1E-17		0.0401987	[0.031-0.049] unit increase	NR [11722792] (imputed)	N
1011	chr5	55857025	55857025	rs11429307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycoprotein acetyls levels	115,082 European ancestry individuals	NA	5q11.2		rs11429307-G	0.808483	5E-8		0.028463	[0.018-0.039] unit decrease	NR [11722792] (imputed)	N
1011	chr5	55857025	55857025	rs11429307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	5q11.2		rs11429307-G	0.808476	8E-15		0.0362186	[0.027-0.045] unit decrease	NR [11722792] (imputed)	N
1011	chr5	55857025	55857025	rs11429307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	5q11.2		rs11429307-G	0.808483	1E-18		0.044673	[0.035-0.055] unit increase	NR [11722792] (imputed)	N
1011	chr5	55857025	55857025	rs11429307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	5q11.2		rs11429307-G	0.808483	2E-13		0.0369785	[0.027-0.047] unit increase	NR [11722792] (imputed)	N
1011	chr5	55857025	55857025	rs11429307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	5q11.2		rs11429307-G	0.808483	9E-27		0.0537422	[0.044-0.064] unit increase	NR [11722792] (imputed)	N
1011	chr5	55857025	55857025	rs11429307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	5q11.2		rs11429307-G	0.808483	2E-15		0.0370418	[0.028-0.046] unit increase	NR [11722792] (imputed)	N
1011	chr5	55857025	55857025	rs11429307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	5q11.2		rs11429307-G	0.808483	4E-31		0.0579755	[0.048-0.068] unit increase	NR [11722792] (imputed)	N
1011	chr5	55857025	55857025	rs11429307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	5q11.2		rs11429307-G	0.808483	6E-27		0.054694	[0.045-0.065] unit decrease	NR [11722792] (imputed)	N
1011	chr5	55857025	55857025	rs11429307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	5q11.2		rs11429307-G	0.808483	1E-18		0.0431951	[0.034-0.053] unit increase	NR [11722792] (imputed)	N
1011	chr5	55857025	55857025	rs11429307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	5q11.2		rs11429307-G	0.808483	3E-28		0.0560172	[0.046-0.066] unit decrease	NR [11722792] (imputed)	N
1011	chr5	55857025	55857025	rs11429307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	5q11.2		rs11429307-G	0.808483	7E-22		0.04437	[0.035-0.053] unit increase	NR [11722792] (imputed)	N
1011	chr5	55857025	55857025	rs11429307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	5q11.2		rs11429307-G	0.808483	1E-26		0.0541497	[0.044-0.064] unit decrease	NR [11722792] (imputed)	N
1011	chr5	55857025	55857025	rs11429307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in VLDL	115,082 European ancestry individuals	NA	5q11.2		rs11429307-G	0.808483	4E-18		0.0453126	[0.035-0.056] unit decrease	NR [11722792] (imputed)	N
1011	chr5	55857025	55857025	rs11429307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large VLDL particles	115,082 European ancestry individuals	NA	5q11.2		rs11429307-G	0.808483	3E-30		0.0577074	[0.048-0.068] unit decrease	NR [11722792] (imputed)	N
1011	chr5	55857025	55857025	rs11429307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small VLDL particles	115,082 European ancestry individuals	NA	5q11.2		rs11429307-G	0.808483	2E-23		0.0516621	[0.042-0.062] unit decrease	NR [11722792] (imputed)	N
1011	chr5	55857025	55857025	rs11429307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium VLDL particles	115,082 European ancestry individuals	NA	5q11.2		rs11429307-G	0.808483	3E-12		0.0365979	[0.026-0.047] unit decrease	NR [11722792] (imputed)	N
1011	chr5	55857025	55857025	rs11429307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large VLDL particles	115,082 European ancestry individuals	NA	5q11.2		rs11429307-G	0.808483	2E-28		0.0560648	[0.046-0.066] unit decrease	NR [11722792] (imputed)	N
1011	chr5	55857025	55857025	rs11429307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	5q11.2		rs11429307-G	0.808483	1E-22		0.0451158	[0.036-0.054] unit increase	NR [11722792] (imputed)	N
1011	chr5	55857025	55857025	rs11429307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of chylomicrons and extremely large VLDL particles	115,082 European ancestry individuals	NA	5q11.2		rs11429307-G	0.808483	4E-27		0.0544737	[0.045-0.064] unit decrease	NR [11722792] (imputed)	N
1011	chr5	55857025	55857025	rs11429307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of VLDL particles	115,082 European ancestry individuals	NA	5q11.2		rs11429307-G	0.808483	2E-17		0.0442023	[0.034-0.054] unit decrease	NR [11722792] (imputed)	N
1011	chr5	55857025	55857025	rs11429307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	5q11.2		rs11429307-G	0.808483	4E-24		0.0500721	[0.04-0.06] unit increase	NR [11722792] (imputed)	N
1011	chr5	55857025	55857025	rs11429307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	5q11.2		rs11429307-G	0.808483	7E-10		0.0323965	[0.022-0.043] unit decrease	NR [11722792] (imputed)	N
1011	chr5	55857025	55857025	rs11429307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	5q11.2		rs11429307-G	0.808483	7E-22		0.0473529	[0.038-0.057] unit increase	NR [11722792] (imputed)	N
1011	chr5	55857025	55857025	rs11429307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	5q11.2		rs11429307-G	0.808483	7E-12		0.0358595	[0.026-0.046] unit decrease	NR [11722792] (imputed)	N
1011	chr5	55857025	55857025	rs11429307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	5q11.2		rs11429307-G	0.808483	2E-25		0.0530823	[0.043-0.063] unit increase	NR [11722792] (imputed)	N
1011	chr5	55857025	55857025	rs11429307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	5q11.2		rs11429307-G	0.808483	3E-27		0.054229	[0.044-0.064] unit increase	NR [11722792] (imputed)	N
1011	chr5	55857025	55857025	rs11429307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large VLDL	115,082 European ancestry individuals	NA	5q11.2		rs11429307-G	0.808483	1E-21		0.049395	[0.039-0.06] unit decrease	NR [11722792] (imputed)	N
1011	chr5	55857025	55857025	rs11429307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	5q11.2		rs11429307-G	0.808483	3E-23		0.0469511	[0.038-0.056] unit increase	NR [11722792] (imputed)	N
1011	chr5	55857025	55857025	rs11429307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large VLDL	115,082 European ancestry individuals	NA	5q11.2		rs11429307-G	0.808483	2E-20		0.0480061	[0.038-0.058] unit decrease	NR [11722792] (imputed)	N
1011	chr5	55857025	55857025	rs11429307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	5q11.2		rs11429307-G	0.808483	3E-27		0.0503064	[0.041-0.059] unit increase	NR [11722792] (imputed)	N
1011	chr5	55857025	55857025	rs11429307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	5q11.2		rs11429307-G	0.808483	4E-25		0.0526509	[0.043-0.063] unit decrease	NR [11722792] (imputed)	N
1011	chr5	55857025	55857025	rs11429307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	5q11.2		rs11429307-G	0.808483	5E-19		0.0421436	[0.033-0.051] unit increase	NR [11722792] (imputed)	N
1011	chr5	55857025	55857025	rs11429307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	5q11.2		rs11429307-G	0.808483	7E-23		0.0489544	[0.039-0.059] unit increase	NR [11722792] (imputed)	N
1011	chr5	55857025	55857025	rs11429307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	5q11.2		rs11429307-G	0.80827	1E-19		0.0456014	[0.036-0.055] unit increase	NR [11722792] (imputed)	N
1011	chr5	55857025	55857025	rs11429307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	5q11.2		rs11429307-G	0.808483	8E-20		0.0450709	[0.035-0.055] unit increase	NR [11722792] (imputed)	N
1011	chr5	55857025	55857025	rs11429307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	5q11.2		rs11429307-G	0.808483	2E-28		0.0552393	[0.045-0.065] unit increase	NR [11722792] (imputed)	N
1011	chr5	55857025	55857025	rs11429307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	5q11.2		rs11429307-G	0.808483	8E-28		0.0540945	[0.044-0.064] unit increase	NR [11722792] (imputed)	N
1011	chr5	55857025	55857025	rs11429307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	5q11.2		rs11429307-G	0.808483	9E-25		0.0527474	[0.043-0.063] unit decrease	NR [11722792] (imputed)	N
1011	chr5	55857025	55857025	rs11429307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	5q11.2		rs11429307-G	0.808483	2E-22		0.0464154	[0.037-0.056] unit increase	NR [11722792] (imputed)	N
1011	chr5	55857025	55857025	rs11429307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	5q11.2		rs11429307-G	0.808483	1E-24		0.0526931	[0.043-0.063] unit decrease	NR [11722792] (imputed)	N
1011	chr5	55857025	55857025	rs11429307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	5q11.2		rs11429307-G	0.808483	4E-26		0.0489836	[0.04-0.058] unit increase	NR [11722792] (imputed)	N
1011	chr5	55857025	55857025	rs11429307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	5q11.2		rs11429307-G	0.808483	1E-26		0.0540722	[0.044-0.064] unit decrease	NR [11722792] (imputed)	N
1011	chr5	55857025	55857025	rs11429307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for VLDL particles	115,082 European ancestry individuals	NA	5q11.2		rs11429307-G	0.808483	2E-26		0.0522672	[0.043-0.062] unit decrease	NR [11722792] (imputed)	N
1011	chr5	55857025	55857025	rs11429307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	5q11.2		rs11429307-G	0.808483	1E-22		0.0456427	[0.037-0.055] unit increase	NR [11722792] (imputed)	N
1011	chr5	55857025	55857025	rs11429307	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Aspartate aminotransferase levels	386,570 British ancestry individuals, 10,617 Asian or Asian British individuals, 7,426 Black or Black British individuals, 2,321 Chinese ancestry individuals	NA	5q11.2	C5orf67	rs11429307-?	NR	5E-9		0.002	[0.0012-0.0028] unit increase	Affymetrix [21347608] (imputed)	N
1011	chr5	55857025	55857025	rs11429307	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Alanine aminotransferase levels	387,859 British ancestry individuals, 10,635 Asian or Asian British individuals, 7,468 Black or Black British individuals, 2,338 Chinese ancestry individuals	NA	5q11.2	C5orf67	rs11429307-?	NR	1E-22		0.005	[0.0038-0.0062] unit increase	Affymetrix [21347608] (imputed)	N
1011	chr5	55857025	55857025	rs11429307	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	5q11.2	intergenic	rs11429307-?	NR	2E-37		0.0427	[0.037-0.049] unit increase	Affymetrix [5701386] (imputed)	N
1011	chr5	55857025	55857025	rs11429307	31589552	Lind L	2019-10-07	Metab Syndr Relat Disord	Genome-Wide Association Study of the Metabolic Syndrome in UK Biobank.	Metabolic syndrome	291,107 European ancestry individuals	NA	5q11.2	C5orf67	rs11429307-GT	0.190881	4E-16		0.0669661	[0.051-0.083] unit increase	Affymetrix [9463307] (imputed)	N
1011	chr5	55857025	55857025	rs11429307	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	5q11.2	AC022431.2	rs11429307-GT	0.1918	8E-9		0.02627811	[0.017-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
1011	chr5	55857548	55857548	rs547065676	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	5q11.2	NR	rs547065676-A	0.809433	2E-31		0.0286141	[0.024-0.033] unit decrease	Affymetrix [15000001]	N
1011	chr5	55857548	55857548	rs547065676	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	5q11.2	AC022431.2	rs547065676-AT	0.1908	3E-10		0.02901949	[0.02-0.038] unit increase	Affymetrix [~ 2500000] (imputed)	N
1011	chr5	55857549	55857549	rs11450869	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	5q11.2		rs11450869-AT	NR	3E-54		0.0464	[0.041-0.052] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
1011	chr5	55857549	55857549	rs11450869	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	5q11.2		rs11450869-AT	NR	6E-28		0.0322	[0.027-0.038] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
1011	chr5	55857549	55857549	rs11450869	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	5q11.2		rs11450869-AT	NR	1E-19		0.0262	[0.021-0.032] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
1011	chr5	55857875	55857876	rs62357886	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	5q11.2	AC022431.2	rs62357886-T	NR	1E-8		0.0202773	[0.013-0.027] unit decrease	Affymetrix [319769] (imputed)	N
1011	chr5	55857875	55857876	rs62357886	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	5q11.2	AC022431.2	rs62357886-T	NR	2E-8		0.0201639	[0.013-0.027] unit decrease	Affymetrix [319769] (imputed)	N
1011	chr5	55857875	55857876	rs62357886	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	5q11.2	AC022431.2	rs62357886-T	NR	5E-9		0.02092	[0.014-0.028] unit decrease	Affymetrix [321114] (imputed)	N
1011	chr5	55857875	55857876	rs62357886	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	5q11.2	AC022431.2	rs62357886-T	NR	4E-8		0.0198185	[0.013-0.027] unit decrease	Affymetrix [321169] (imputed)	N
1011	chr5	55857875	55857876	rs62357886	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	5q11.2	NR	rs62357886-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1011	chr5	55857875	55857876	rs62357886	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	5q11.2	NR	rs62357886-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
1011	chr5	55859951	55859952	rs11743303	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	5q11.2		rs11743303-?	NR	7E-12		0.00773267	[0.0055-0.0099] unit decrease	NR [NR]	N
1011	chr5	55859951	55859952	rs11743303	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	5q11.2	NR	rs11743303-G	NR	4E-9		0.0172	[0.012-0.023] unit increase	Affymetrix [9000000] (imputed)	N
1011	chr5	55859951	55859952	rs11743303	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls	NA	5q11.2	AC022431.2	rs11743303-G	0.208058	3E-9		0.041238975	[0.028-0.055] unit increase	Affymetrix [7288503] (imputed)	N
1011	chr5	55859951	55859952	rs11743303	30670697	Kilpelainen TO	2019-01-22	Nat Commun	Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity.	Triglycerides x physical activity interaction (2df test)	7,294 African American inactive individuals, 12,832 African American active individuals, 1,352 Asian ancestry inactive individuals, 3,049 Asian ancestry active individuals, 20,622 European ancestry inactive individuals, 51,480 European ancestry active individuals, 2,166 Hispanic or Latin American inactive individuals, 3,486 Hispanic or Latin American active individuals	580 African American inactive individuals, 1,540 African American active individuals, 1,217 South African Black ancestry inactive individuals, 389 South African Black ancestry active individuals, 765 East Asian ancestry inactive individuals, 1,814 East Asian ancestry active individuals,  724 South Asian ancestry inactive individuals, 1,424 South Asian ancestry active individuals, 32,456 European ancestry inactive individuals, 49,510 European ancestry active individuals, 2,619 Hispanic inactive individuals, 8,803 Hispanic active individuals	5q11.2	NR	rs11743303-A	0.7998	1E-16				Affymetrix, Illumina [at least 2500000] (imputed)	N
1011	chr5	55859951	55859952	rs11743303	23754948	Randall JC	2013-06-06	PLoS Genet	Sex-stratified genome-wide association studies including 270,000 individuals show sexual dimorphism in genetic loci for anthropometric traits.	Sexual dimorphism in anthropometric traits	up to 60,586 European ancestry males, up to 73,137 European ancestry females	up to 62,395 European ancestry males, up to 74,657 European ancestry females	5q11.2	MAP3K1	rs11743303-G		8E-7	(WCadjBMI, women)			Affymetrix, Illumina [2846694] (imputed)	N
1011	chr5	55860780	55860781	rs3936511	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	VLDL cholesterol levels	115,082 European ancestry individuals	NA	5q11.2		rs3936511-A	0.80757	5E-13		0.0377945	[0.028-0.048] unit decrease	NR [11722792] (imputed)	N
1011	chr5	55860780	55860781	rs3936511	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very small VLDL	115,082 European ancestry individuals	NA	5q11.2		rs3936511-A	0.80757	2E-8		0.0290639	[0.019-0.039] unit decrease	NR [11722792] (imputed)	N
1011	chr5	55860780	55860781	rs3936511	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small VLDL	115,082 European ancestry individuals	NA	5q11.2		rs3936511-A	0.80757	3E-14		0.0396284	[0.029-0.05] unit decrease	NR [11722792] (imputed)	N
1011	chr5	55860780	55860781	rs3936511	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in VLDL	115,082 European ancestry individuals	NA	5q11.2		rs3936511-A	0.80757	2E-9		0.0314582	[0.021-0.042] unit decrease	NR [11722792] (imputed)	N
1011	chr5	55860780	55860781	rs3936511	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls, 33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	5q11.2		rs3936511-G	NR	2E-8		0.0367	[0.024-0.049] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1011	chr5	55860780	55860781	rs3936511	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	5q11.2	ANKRD55, MAP3K1	rs3936511-A	0.81	3E-10		6.32	z-score increase	Affymetrix [4311822] (imputed)	N
1011	chr5	55860780	55860781	rs3936511	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	5q11.2	AC022431.2	rs3936511-G	0.191621	9E-19		0.025245134	[0.02-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
1011	chr5	55860780	55860781	rs3936511	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	5q11.2	AC022431.2	rs3936511-A	0.808037	1E-9		0.0108306	[0.0073-0.0143] unit increase	Affymetrix [12370749]	N
1011	chr5	55860780	55860781	rs3936511	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	5q11.2	MAP3K1	rs3936511-?		6E-9				Affymetrix, Illumina [NR] (imputed)	N
1011	chr5	55860780	55860781	rs3936511	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	5q11.2	AC022431.2	rs3936511-A	0.808088	6E-74		0.0459535	[0.041-0.051] unit decrease	Affymetrix [NR] (imputed)	N
1011	chr5	55860780	55860781	rs3936511	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	5q11.2	AC022431.2	rs3936511-A	0.807982	4E-36		0.0303959	[0.026-0.035] unit increase	Affymetrix [NR] (imputed)	N
1011	chr5	55860780	55860781	rs3936511	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	5q11.2	AC022431.2	rs3936511-A	0.808142	1E-16		0.0218684	[0.017-0.027] unit decrease	Affymetrix [NR] (imputed)	N
1011	chr5	55860780	55860781	rs3936511	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	5q11.2	AC022431.2	rs3936511-A	0.807961	1E-18		0.0220026	[0.017-0.027] unit increase	Affymetrix [NR] (imputed)	N
1011	chr5	55860780	55860781	rs3936511	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	5q11.2	intergenic	rs3936511-?	NR	7E-18		0.028	[0.022-0.034] unit increase	Affymetrix [5701386] (imputed)	N
1011	chr5	55860780	55860781	rs3936511	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	5q11.2	LOC101928448	rs3936511-A	0.823	4E-8		0.0366	[0.023-0.05] unit decrease	Affymetrix [at least 7947838] (imputed)	N
1011	chr5	55860865	55860866	rs3936510	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	5q11.2		rs3936510-G	0.797832	3E-14		0.0377688	[0.028-0.048] unit decrease	NR [11722792] (imputed)	N
1011	chr5	55860865	55860866	rs3936510	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	5q11.2		rs3936510-G	0.798048	4E-17		0.0418319	[0.032-0.052] unit decrease	NR [11722792] (imputed)	N
1011	chr5	55860865	55860866	rs3936510	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	5q11.2		rs3936510-G	0.797551	3E-10		0.0325555	[0.022-0.043] unit decrease	NR [11722792] (imputed)	N
1011	chr5	55860865	55860866	rs3936510	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	5q11.2		rs3936510-G	0.798048	1E-9		0.0289774	[0.02-0.038] unit increase	NR [11722792] (imputed)	N
1011	chr5	55860865	55860866	rs3936510	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in HDL	115,082 European ancestry individuals	NA	5q11.2		rs3936510-G	0.798048	3E-12		0.0318337	[0.023-0.041] unit increase	NR [11722792] (imputed)	N
1011	chr5	55860865	55860866	rs3936510	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large HDL particles	115,082 European ancestry individuals	NA	5q11.2		rs3936510-G	0.798048	6E-17		0.0387814	[0.03-0.048] unit increase	NR [11722792] (imputed)	N
1011	chr5	55860865	55860866	rs3936510	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	5q11.2		rs3936510-T	NR	1E-17		0.0239	[0.018-0.029] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
1011	chr5	55860865	55860866	rs3936510	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	5q11.2	AC022431.2	rs3936510-T	NR	2E-48		0.0513484	[0.044-0.058] unit increase	Affymetrix [319769] (imputed)	N
1011	chr5	55860865	55860866	rs3936510	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	5q11.2	AC022431.2	rs3936510-T	NR	4E-49		0.051713	[0.045-0.059] unit increase	Affymetrix [319769] (imputed)	N
1011	chr5	55860865	55860866	rs3936510	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	5q11.2	AC022431.2	rs3936510-T	NR	6E-52		0.053653	[0.047-0.061] unit increase	Affymetrix [321114] (imputed)	N
1011	chr5	55860865	55860866	rs3936510	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	5q11.2	AC022431.2	rs3936510-T	NR	2E-58		0.0571176	[0.05-0.064] unit increase	Affymetrix [321169] (imputed)	N
1011	chr5	55860865	55860866	rs3936510	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	5q11.2	NR	rs3936510-?	NR	2E-39				Affymetrix [~ 8270000] (imputed)	N
1011	chr5	55860865	55860866	rs3936510	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	5q11.2	NR	rs3936510-?	NR	4E-36				Affymetrix [~ 8270000] (imputed)	N
1011	chr5	55860865	55860866	rs3936510	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	5q11.2	NR	rs3936510-T	0.1969	5E-43		0.0299	[0.026-0.034] unit increase	NR [~ 27400000] (imputed)	N
1011	chr5	55860865	55860866	rs3936510	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	5q11.2	NA	rs3936510-T	0.1967	2E-29		0.0241	[0.02-0.028] unit increase	NR [~ 27400000] (imputed)	N
1011	chr5	55860865	55860866	rs3936510	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	5q11.2	NR	rs3936510-T	0.1967	2E-29		0.0241	[0.02-0.028] unit increase	NR [~ 27400000] (imputed)	N
1011	chr5	55860865	55860866	rs3936510	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	5q11.2	LOC101928448	rs3936510-T	0.186	4E-8		0.039	[0.025-0.053] unit increase	Affymetrix [7947838] (imputed)	N
1011	chr5	55860865	55860866	rs3936510	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	5q11.2	MAP3K1	rs3936510-T	0.1875	3E-11	(EA, women)	0.0439	[0.031-0.057] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1011	chr5	55860865	55860866	rs3936510	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	5q11.2	MAP3K1	rs3936510-T	0.1875	2E-8	(EA)	0.0289	[0.019-0.039] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1011	chr5	55860865	55860866	rs3936510	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	5q11.2	MAP3K1	rs3936510-T	0.1907	9E-8	(EA, women)	0.04	[0.025-0.055] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1011	chr5	55860865	55860866	rs3936510	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	5q11.2	MAP3K1	rs3936510-T	0.1875	5E-7	(EA)	0.0295	[0.018-0.041] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1011	chr5	55860865	55860866	rs3936510	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	5q11.2	MAP3K1	rs3936510-?	0.1875	7E-10	(EA, women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1011	chr5	55860865	55860866	rs3936510	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	5q11.2	MAP3K1	rs3936510-?	0.1875	1E-7	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1011	chr5	55860865	55860866	rs3936510	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	5q11.2	MAP3K1	rs3936510-T	0.1867	2E-12	(EA, women)	0.045	[0.032-0.058] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1011	chr5	55860865	55860866	rs3936510	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	5q11.2	MAP3K1	rs3936510-T	0.1894	1E-9	(EA,women)	0.0432	[0.029-0.057] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1011	chr5	55860865	55860866	rs3936510	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	5q11.2	MAP3K1	rs3936510-?	0.1867	6E-13	(EA, women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1011	chr5	55860865	55860866	rs3936510	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	5q11.2	MAP3K1	rs3936510-T	0.1898	8E-6	(women)	0.0263	[0.015-0.038] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1011	chr5	55860865	55860866	rs3936510	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex x age interaction (4df test)	up to 43,776 European ancestry men aged <50, up to 50,526 European ancestry women aged <50, up to 69,944 European ancestry men aged >50, up to 88,129 European ancestry women aged >50	NA	5q11.2	NR	rs3936510-T	0.182860400797187	1E-8				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1011	chr5	55860865	55860866	rs3936510	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	5q11.2	MAP3K1	rs3936510-T	0.1884	8E-12	(women)	0.0401	[0.029-0.052] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1011	chr5	55860865	55860866	rs3936510	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	5q11.2	MAP3K1	rs3936510-T	0.1865	6E-12	(EA, women)	0.0416	[0.03-0.053] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1011	chr5	55860865	55860866	rs3936510	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	5q11.2	MAP3K1	rs3936510-T	0.1862	2E-8		0.0246	[0.016-0.033] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1011	chr5	55860865	55860866	rs3936510	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	5q11.2	MAP3K1	rs3936510-T	0.1845	9E-9	(EA)	0.0262	[0.017-0.035] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1011	chr5	55860907	55860908	rs5868014	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	5q11.2		rs5868014-G	NR	5E-15		0.0214	[0.016-0.027] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
1011	chr5	55860907	55860908	rs5868014	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Triglyceride levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	5q11.2	C5orf67	rs5868014-?		5E-11		0.0572	[0.04-0.074] unit decrease	Illumina [31500000] (imputed)	N
1011	chr5	55860907	55860908	rs5868014	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	5q11.2	AC022431.2	rs5868014-G	0.186006	1E-22		0.028145475	[0.023-0.034] unit increase	Affymetrix [93095623] (imputed)	N
1011	chr5	55860907	55860908	rs5868014	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	5q11.2	AC022431.2	rs5868014-G	0.186008	5E-26		0.03024693	[0.025-0.036] unit increase	Affymetrix [93095623] (imputed)	N
1011	chr5	55860907	55860908	rs5868014	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	5q11.2	AC022431.2	rs5868014-G	0.185986	4E-14		0.02176919	[0.016-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1011	chr5	55860907	55860908	rs5868014	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	5q11.2	AC022431.2	rs5868014-G	0.186009	3E-26		0.030207187	[0.025-0.036] unit increase	Affymetrix [93095623] (imputed)	N
1011	chr5	55860907	55860908	rs5868014	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	5q11.2	AC022431.2	rs5868014-G	0.186009	7E-30		0.03241158	[0.027-0.038] unit increase	Affymetrix [93095623] (imputed)	N
1011	chr5	55860907	55860908	rs5868014	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	5q11.2	AC022431.2	rs5868014-G	0.1873	3E-10		0.02880371	[0.02-0.038] unit increase	Affymetrix [~ 2500000] (imputed)	N
1011	chr5	55861358	55861359	rs13173241	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in non-smokers	77,113 European ancestry women, 47,319 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	5q11.2	MAP3K1	rs13173241-A	0.1961	9E-6	(women)	0.0273	[0.015-0.039] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1011	chr5	55861358	55861359	rs13173241	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	5q11.2	MAP3K1	rs13173241-A	0.1961	2E-6	(women)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1011	chr5	55861358	55861359	rs13173241	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	5q11.2	MAP3K1	rs13173241-A	0.1961	2E-6	(women)	0.0264	[0.016-0.037] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1011	chr5	55861358	55861359	rs13173241	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	5q11.2	MAP3K1	rs13173241-A	0.1933	3E-18	(EA,women)	0.0484	[0.038-0.059] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1011	chr5	55861358	55861359	rs13173241	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	5q11.2	MAP3K1	rs13173241-A	0.1933	2E-9	(EA)	0.0259	[0.017-0.034] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1011	chr5	55861463	55861464	rs28650790	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of apolipoprotein B to apolipoprotein A1 levels	115,082 European ancestry individuals	NA	5q11.2		rs28650790-C	0.807581	4E-10		0.0323026	[0.022-0.042] unit decrease	NR [11722792] (imputed)	N
1011	chr5	55861463	55861464	rs28650790	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	5q11.2		rs28650790-C	0.807581	3E-8		0.0290048	[0.019-0.039] unit decrease	NR [11722792] (imputed)	N
1011	chr5	55861463	55861464	rs28650790	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	5q11.2		rs28650790-C	0.807581	3E-8		0.0288813	[0.019-0.039] unit decrease	NR [11722792] (imputed)	N
1011	chr5	55861463	55861464	rs28650790	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	5q11.2		rs28650790-C	0.807581	5E-12		0.0361052	[0.026-0.046] unit decrease	NR [11722792] (imputed)	N
1011	chr5	55861463	55861464	rs28650790	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	5q11.2		rs28650790-T	NR	4E-9		0.0154	[0.01-0.02] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
1011	chr5	55861463	55861464	rs28650790	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	5q11.2	C5orf67	rs28650790-C	0.808148	2E-23		0.00497183	[0.004-0.0059] unit decrease	Affymetrix [13995440] (imputed)	N
1011	chr5	55861594	55861595	rs9687832	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	5q11.2	ANKRD55	rs9687832-A	0.1975	2E-20		1.08	[1.06-1.10]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1011	chr5	55861600	55861601	rs9687833	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in HDL	115,082 European ancestry individuals	NA	5q11.2		rs9687833-G	0.79299	1E-10		0.0293503	[0.02-0.038] unit increase	NR [11722792] (imputed)	N
1011	chr5	55861600	55861601	rs9687833	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in HDL	115,082 European ancestry individuals	NA	5q11.2		rs9687833-G	0.79299	2E-8		0.0256855	[0.017-0.035] unit increase	NR [11722792] (imputed)	N
1011	chr5	55861600	55861601	rs9687833	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	5q11.2	NR	rs9687833-G	NR	4E-19		0.042	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1011	chr5	55861600	55861601	rs9687833	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	5q11.2	NR	rs9687833-G	0.796	3E-17	(EA)	0.043	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1011	chr5	55861600	55861601	rs9687833	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	5q11.2	NR	rs9687833-G	NR	7E-13		0.031	unit increase	Affymetrix [at least 7091467] (imputed)	N
1011	chr5	55861600	55861601	rs9687833	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	5q11.2	NR	rs9687833-G	0.796	4E-10	(EA)	0.029	unit increase	Affymetrix [at least 7091467] (imputed)	N
1011	chr5	55861600	55861601	rs9687833	27189021	Cook JP	2016-05-18	Eur J Hum Genet	Multi-ethnic genome-wide association study identifies novel locus for type 2 diabetes susceptibility.	Type 2 diabetes	746 African American cases, 2,825 African American controls, 743 East Asian ancestry cases, 3,992 East Asian ancestry controls, 7,111 European ancestry cases, 49,688 European ancestry controls, 1,147 Latino cases, 5,352 Latino controls	12,171 European ancestry cases, 56,862 European ancestry controls	5q11.2	ANKRD55	rs9687833-A	0.2	3E-9		1.12	[1.08-1.16]	NR [at least 8497425] (imputed)	N
1011	chr5	55861785	55861786	rs9686661	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	5q11.2		rs9686661-C	0.798435	2E-20		0.0454766	[0.036-0.055] unit increase	NR [11722792] (imputed)	N
1011	chr5	55861785	55861786	rs9686661	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body fat percentage and type 2 diabetes (pairwise)	200,863 European ancestry individuals, 24,401 East Asian, South Asian and African American ancestry individuals	NA	5q11.2	ANKRD55-MAP3K1	rs9686661-C	0.8141	5E-9				Affymetrix, Illumina [2331072] (imputed)	N
1011	chr5	55861785	55861786	rs9686661	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body fat percentage and triglycerides (pairwise)	268,505 European ancestry individuals, 10,072 East Asian, South Asian and African American ancestry individuals	NA	5q11.2	ANKRD55-MAP3K1	rs9686661-C	0.8141	2E-20				Affymetrix, Illumina [2331072] (imputed)	N
1011	chr5	55861785	55861786	rs9686661	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body fat percentage and HDL-C (pairwise)	277,811 European ancestry individuals, 10,022 East Asian, South Asian and African American ancestry individuals	NA	5q11.2	ANKRD55-MAP3K1	rs9686661-C	0.8141	9E-14				Affymetrix, Illumina [2331072] (imputed)	N
1011	chr5	55861785	55861786	rs9686661	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	5q11.2		rs9686661-T	0.1947	2E-14		0.22147131	[0.17-0.28] mmHg increase	Affymetrix, Illumina [242865] (imputed)	N
1011	chr5	55861785	55861786	rs9686661	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals, 21,077 African American individuals, 33,689 South Asian ancestry individuals, 4,586 Hispanic individuals	354,096 European ancestry individuals, 63,282 African American individuals, 4,792 East Asian ancestry individuals, 22,802 Hispanic individuals, 2,695 Native American ancestry individuals	5q11.2		rs9686661-T	0.1967	1E-8		0.10717068	[0.071-0.144] mmHg increase	Affymetrix, Illumina [247315] (imputed)	N
1011	chr5	55861785	55861786	rs9686661	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	5q11.2		rs9686661-T	0.1946	1E-9		0.10589933	[0.072-0.14] mmHg increase	Affymetrix, Illumina [242866] (imputed)	N
1011	chr5	55861785	55861786	rs9686661	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	5q11.2	AC022431.2	rs9686661-C	0.799416	1E-8		0.0148497	[0.0098-0.0199] unit decrease	Affymetrix [NR] (imputed)	N
1011	chr5	55861785	55861786	rs9686661	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	5q11.2	NR	rs9686661-C	0.799701	1E-14		0.012459	[0.0093-0.0156] unit increase	Affymetrix [16578495] (imputed)	N
1011	chr5	55861785	55861786	rs9686661	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	5q11.2	NR	rs9686661-?	NR	7E-6		0.022198	[0.013-0.032] unit increase	Illumina [31978265] (imputed)	N
1011	chr5	55861785	55861786	rs9686661	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Type 2 diabetes	approximately 459,000 European ancestry individuals	NA	5q11.2		rs9686661-?	NR	3E-11				NR [~ 8900000] (imputed)	N
1011	chr5	55861785	55861786	rs9686661	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	5q11.2	NR	rs9686661-C	NR	5E-20		0.043	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1011	chr5	55861785	55861786	rs9686661	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	5q11.2	NR	rs9686661-C	0.801	4E-18	(EA)	0.045	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1011	chr5	55861785	55861786	rs9686661	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	5q11.2	NR	rs9686661-C	NR	7E-13		0.031	unit increase	Affymetrix [at least 7091467] (imputed)	N
1011	chr5	55861785	55861786	rs9686661	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	5q11.2	NR	rs9686661-C	0.801	6E-10	(EA)	0.029	unit increase	Affymetrix [at least 7091467] (imputed)	N
1011	chr5	55861785	55861786	rs9686661	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Triglyceride levels	28,183 East Asian ancestry individuals, 177,861 European ancestry individuals	10,857 Chinese ancestry individuals	5q11.2	MAP3K1	rs9686661-T	0.177	2E-16	(Trans-ethnic initial)	0.0379	[0.029-0.047] unit increase (EA Beta values)	Affymetrix, Illumina [up to 1900000] (imputed)	N
1011	chr5	55861785	55861786	rs9686661	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Triglycerides	94,595 European ancestry individuals	93,982 European ancestry individuals	5q11.2	MAP3K1	rs9686661-T	0.2	3E-16		0.038	[NR] mg/dL increase	NR [NR] (imputed)	N
1011	chr5	55861785	55861786	rs9686661	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	Triglycerides	96,598 European ancestry individuals	NA	5q11.2	MAP3K1, ANKRD55	rs9686661-T	0.2	1E-10		2.57	[1.61-3.53] mg/dL increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1011	chr5	55861893	55861894	rs9687846	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	5q11.2		rs9687846-G	0.798596	1E-12		0.0352624	[0.026-0.045] unit decrease	NR [11722792] (imputed)	N
1011	chr5	55861893	55861894	rs9687846	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	5q11.2		rs9687846-G	0.798596	3E-10		0.0317538	[0.022-0.042] unit decrease	NR [11722792] (imputed)	N
1011	chr5	55861893	55861894	rs9687846	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	5q11.2		rs9687846-G	0.798596	3E-13		0.0365271	[0.027-0.046] unit decrease	NR [11722792] (imputed)	N
1011	chr5	55861893	55861894	rs9687846	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	5q11.2		rs9687846-G	0.798596	2E-20		0.0456065	[0.036-0.055] unit decrease	NR [11722792] (imputed)	N
1011	chr5	55861893	55861894	rs9687846	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	5q11.2		rs9687846-G	0.798596	3E-10		0.031612	[0.022-0.041] unit decrease	NR [11722792] (imputed)	N
1011	chr5	55861893	55861894	rs9687846	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	5q11.2		rs9687846-G	0.798596	4E-17		0.0412352	[0.032-0.051] unit increase	NR [11722792] (imputed)	N
1011	chr5	55861893	55861894	rs9687846	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	5q11.2		rs9687846-G	0.798596	1E-18		0.0431486	[0.034-0.053] unit increase	NR [11722792] (imputed)	N
1011	chr5	55861893	55861894	rs9687846	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	5q11.2		rs9687846-G	0.798596	6E-10		0.0316376	[0.022-0.042] unit increase	NR [11722792] (imputed)	N
1011	chr5	55861893	55861894	rs9687846	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	5q11.2		rs9687846-G	0.798596	3E-8		0.0258316	[0.017-0.035] unit increase	NR [11722792] (imputed)	N
1011	chr5	55861893	55861894	rs9687846	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in IDL	115,082 European ancestry individuals	NA	5q11.2		rs9687846-G	0.798596	4E-13		0.0364031	[0.027-0.046] unit increase	NR [11722792] (imputed)	N
1011	chr5	55861893	55861894	rs9687846	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium HDL	115,082 European ancestry individuals	NA	5q11.2		rs9687846-G	0.798596	2E-11		0.0320295	[0.023-0.041] unit increase	NR [11722792] (imputed)	N
1011	chr5	55861893	55861894	rs9687846	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	5q11.2		rs9687846-G	0.798596	2E-10		0.031667	[0.022-0.041] unit increase	NR [11722792] (imputed)	N
1011	chr5	55861893	55861894	rs9687846	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	5q11.2		rs9687846-G	0.798596	1E-10		0.0325563	[0.023-0.042] unit increase	NR [11722792] (imputed)	N
1011	chr5	55861893	55861894	rs9687846	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	5q11.2		rs9687846-G	0.798596	1E-10		0.0322744	[0.022-0.042] unit increase	NR [11722792] (imputed)	N
1011	chr5	55861893	55861894	rs9687846	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	5q11.2		rs9687846-G	0.798596	1E-17		0.0428017	[0.033-0.053] unit increase	NR [11722792] (imputed)	N
1011	chr5	55861893	55861894	rs9687846	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	5q11.2		rs9687846-G	0.798596	7E-11		0.0308785	[0.022-0.04] unit increase	NR [11722792] (imputed)	N
1011	chr5	55861893	55861894	rs9687846	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	5q11.2	NR	rs9687846-A	NR	1E-12		0.0211	[0.015-0.027] unit increase	Affymetrix [9000000] (imputed)	N
1011	chr5	55861893	55861894	rs9687846	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	5q11.2	NR	rs9687846-A	NR	3E-55		0.0464	[0.041-0.052] unit increase	Affymetrix [9000000] (imputed)	N
1011	chr5	55861893	55861894	rs9687846	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Testosterone levels	310,461 European ancestry individuals, 5,453 African ancestry individuals, 6,680 South Asian ancestry individuals	NA	5q11.2	NR	rs9687846-A	NR	1E-13		0.0231	[0.017-0.029] unit decrease	Affymetrix [9000000] (imputed)	N
1011	chr5	55861893	55861894	rs9687846	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	5q11.2	NR	rs9687846-A	NR	8E-18		0.0268	[0.021-0.033] unit decrease	Affymetrix [9000000] (imputed)	N
1011	chr5	55861893	55861894	rs9687846	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	5q11.2	NR	rs9687846-A	NR	6E-13		0.0213	[0.015-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
1011	chr5	55861893	55861894	rs9687846	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	5q11.2	NR	rs9687846-A	NR	8E-15		0.023	[0.017-0.029] unit increase	Affymetrix [9000000] (imputed)	N
1011	chr5	55861893	55861894	rs9687846	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	5q11.2	NR	rs9687846-A	NR	2E-27		0.0337	[0.028-0.04] unit decrease	Affymetrix [9000000] (imputed)	N
1011	chr5	55861893	55861894	rs9687846	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	5q11.2	NR	rs9687846-A	NR	2E-17		0.0253	[0.019-0.031] unit increase	Affymetrix [9000000] (imputed)	N
1011	chr5	55861893	55861894	rs9687846	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	5q11.2	NR	rs9687846-A	NR	4E-13		0.0215	[0.016-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
1011	chr5	55861893	55861894	rs9687846	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	5q11.2	NR	rs9687846-A	NR	1E-22		0.0291	[0.023-0.035] unit increase	Affymetrix [9000000] (imputed)	N
1011	chr5	55861893	55861894	rs9687846	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	5q11.2	NR	rs9687846-A	NR	8E-14		0.0232	[0.017-0.029] unit decrease	Affymetrix [9000000] (imputed)	N
1011	chr5	55861893	55861894	rs9687846	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	5q11.2	NR	rs9687846-A	NR	1E-18		0.0261	[0.02-0.032] unit increase	Affymetrix [9000000] (imputed)	N
1011	chr5	55861893	55861894	rs9687846	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	5q11.2	NR	rs9687846-G	0.800305	4E-12		0.0263617	[0.019-0.033] unit increase	Affymetrix [16580851] (imputed)	N
1011	chr5	55861893	55861894	rs9687846	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	5q11.2	MAP3K1	rs9687846-A	0.1927	8E-6	(women)	0.026	[0.015-0.037] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1011	chr5	55861893	55861894	rs9687846	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex x age interaction (4df test)	up to 43,776 European ancestry men aged <50, up to 50,526 European ancestry women aged <50, up to 69,944 European ancestry men aged >50, up to 88,129 European ancestry women aged >50	NA	5q11.2	MAP3K1, ANKRD55, SETD9, MIER3	rs9687846-A	0.1872	3E-8				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1011	chr5	55861893	55861894	rs9687846	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI (age <50)	up to 43,776 European ancestry men, up to 50,526 European ancestry women	NA	5q11.2	MAP3K1, ANKRD55, SETD9, MIER3	rs9687846-A	0.19	2E-7	(women)	0.049	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1011	chr5	55861893	55861894	rs9687846	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	5q11.2	MAP3K1, ANKRD55, SETD9, MIER3	rs9687846-A	0.1872	9E-6		0.0257	units increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1011	chr5	55861893	55861894	rs9687846	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	5q11.2	MAP3K1	rs9687846-A	0.1923	5E-12	(women)	0.0396	[0.028-0.051] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1011	chr5	55861893	55861894	rs9687846	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	5q11.2	MAP3K1	rs9687846-A	0.1905	4E-12	(EA, women)	0.0409	[0.029-0.052] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1011	chr5	55861893	55861894	rs9687846	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	5q11.2	MAP3K1	rs9687846-A	0.1897	1E-7		0.0229	[0.014-0.031] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1011	chr5	55861893	55861894	rs9687846	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	5q11.2	MAP3K1	rs9687846-A	0.188	7E-8	(EA)	0.0242	[0.015-0.033] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1011	chr5	55868096	55868097	rs13179413	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of linoleic acid to total fatty acids	115,006 European ancestry individuals	NA	5q11.2		rs13179413-C	0.7147	6E-11		0.0293835	[0.021-0.038] unit increase	NR [11722792] (imputed)	N
1011	chr5	55868096	55868097	rs13179413	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	5q11.2		rs13179413-?	NR	3E-11				NR [~ 8900000] (imputed)	N
1011	chr5	55868096	55868097	rs13179413	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	5q11.2		rs13179413-?	NR	2E-16				NR [~ 8900000] (imputed)	N
1011	chr5	55868096	55868097	rs13179413	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	5q11.2	AC022431.2	rs13179413-T	0.2786	6E-13		0.2045	[0.15-0.26] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1011	chr5	55869593	55869594	rs35479464	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	5q11.2	AC022431.2	rs35479464-C	NR	8E-11		0.0520561	[0.036-0.068] unit increase	Affymetrix [319769] (imputed)	N
1011	chr5	55869593	55869594	rs35479464	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	5q11.2	AC022431.2	rs35479464-C	NR	5E-11		0.052757	[0.037-0.068] unit increase	Affymetrix [319769] (imputed)	N
1011	chr5	55869593	55869594	rs35479464	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	5q11.2	AC022431.2	rs35479464-C	NR	1E-9		0.0492573	[0.033-0.065] unit increase	Affymetrix [321114] (imputed)	N
1011	chr5	55869593	55869594	rs35479464	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	5q11.2	AC022431.2	rs35479464-C	NR	2E-9		0.0489591	[0.033-0.065] unit increase	Affymetrix [321169] (imputed)	N
1011	chr5	55869593	55869594	rs35479464	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-to-hip ratio adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,049 whole genome sequenced individuals, 29,518 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,001 Mylopotamos (founder/genetic isolate) individuals, 867 Pomak (founder/genetic isolate) individuals	206,045 European ancestry individuals	5q11.2	C5orf67	rs35479464-A	0.9674	1E-6		0.1183	[0.071-0.166] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1011	chr5	55870393	55870394	rs112307723	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-hip ratio	1,254 whole genome sequenced European ancestry individuals, 3,071 whole genome sequenced individuals, 29,723 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,053 Mylopotamos (founder/genetic isolate) individuals, 879 Pomak (founder/genetic isolate) individuals	206,053 European ancestry individuals	5q11.2	C5orf67	rs112307723-T	0.0342	9E-6		0.1137	[0.064-0.164] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1011	chr5	55876282	55876283	rs11948950	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	5q11.2	AC022431.2	rs11948950-A	NR	8E-24		0.047086	[0.038-0.056] unit increase	Affymetrix [319769] (imputed)	N
1011	chr5	55876282	55876283	rs11948950	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	5q11.2	AC022431.2	rs11948950-A	NR	1E-24		0.0478871	[0.039-0.057] unit increase	Affymetrix [319769] (imputed)	N
1011	chr5	55876282	55876283	rs11948950	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	5q11.2	AC022431.2	rs11948950-A	NR	2E-29		0.0531747	[0.044-0.062] unit increase	Affymetrix [321114] (imputed)	N
1011	chr5	55876282	55876283	rs11948950	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	5q11.2	AC022431.2	rs11948950-A	NR	1E-33		0.057095	[0.048-0.066] unit increase	Affymetrix [321169] (imputed)	N
1011	chr5	55890339	55890340	rs116296815	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	5q11.2	AC022431.2	rs116296815-G	NR	9E-9		0.0603734	[0.04-0.081] unit increase	Affymetrix [319769] (imputed)	N
1011	chr5	55890339	55890340	rs116296815	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	5q11.2	AC022431.2	rs116296815-G	NR	5E-9		0.0612778	[0.041-0.082] unit increase	Affymetrix [319769] (imputed)	N
1011	chr5	55890339	55890340	rs116296815	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	5q11.2	AC022431.2	rs116296815-G	NR	6E-10		0.0655768	[0.045-0.086] unit increase	Affymetrix [321169] (imputed)	N
1011	chr5	55904897	55904898	rs17716202	22005930	Hollingworth P	2011-10-18	Mol Psychiatry	Genome-wide association study of Alzheimer's disease with psychotic symptoms.	Psychosis in Alzheimer's disease	1,039 European ancestry cases with psychosis, 610 European ancestry cases without psychosis, 260 European, African American and Native American ancestry cases with psychosis and 125 European, African American and Native American ancestry cases without psychosis from 264 families	NA	5q11.2	NR	rs17716202-?	0.94	8E-6		2.2222223	[NR]	Illumina [1882172] (imputed)	N
1011	chr5	55905539	55905540	rs74966374	30487263	Pollack S	2018-11-28	Diabetes	Multiethnic Genome-wide Association Study of Diabetic Retinopathy using Liability Threshold Modeling of Duration of Diabetes and Glycemic Control.	Diabetic retinopathy (moderate NPDR and PDR)	644 European ancestry cases, 1,970 European ancestry controls, 768 African American cases, 941 African American controls	2,388 East Asian ancestry cases, 6,219 East Asian ancestry controls, 1,658 European ancestry cases, 3,019 European ancestry controls, 1,014 Hispanic cases, 1,240 Hispanic controls	5q11.2	NR	rs74966374-?	NR	2E-6	(AA, adjusted for duration of diabetes and glycemic control)	2.13	[NR]	Affymetrix, Illumina [NR] (imputed)	N
1011	chr5	55922144	55922145	rs11748173	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FVC)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		5q11.2		rs11748173-?	NR	9E-8	(African)	66.84	[42.36-91.32] unit increase	Affymetrix, Illumina [10900000] (imputed)	N
1011	chr5	55922144	55922145	rs11748173	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FEV1)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		5q11.2	ANKRD55, MAP3K1	rs11748173-T	0.21	4E-10	(African)	67.07	[46.06-88.08] ml increase	Affymetrix, Illumina [10900000] (imputed)	N
1011	chr5	55965963	55965964	rs34196215	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	5q11.2		rs34196215-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1012	chr5	55983855	55983856	rs16886034	24493630	Ahsan H	2014-02-03	Cancer Epidemiol Biomarkers Prev	A genome-wide association study of early-onset breast cancer identifies PFKM as a novel breast cancer gene and supports a common genetic spectrum for breast cancer at any age.	Breast cancer (early onset)	3,523 European ancestry young female cases, 2,702 European ancestry young female controls	3,470 European ancestry young female cases, 5,475 European ancestry young female controls	5q11.2	MAP3K1	rs16886034-?	0.08	2E-9		1.36	[1.23-1.51]	Illumina [1265548] (imputed)	N
1012	chr5	55987297	55987298	rs4700436	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	5q11.2		rs4700436-A	0.767679	1E-10		0.016861366	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1012	chr5	55988777	55988778	rs10039206	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	5q11.2		rs10039206-C	0.759566	3E-9		0.015649853	[0.01-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1012	chr5	55988777	55988778	rs10039206	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	5q11.2		rs10039206-C	0.759595	6E-11		0.017106565	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1012	chr5	55988777	55988778	rs10039206	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	5q11.2		rs10039206-C	0.759595	6E-10		0.016230755	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1012	chr5	55988777	55988778	rs10039206	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	5q11.2		rs10039206-?	NR	3E-10				NR [~ 8900000] (imputed)	N
1012	chr5	55990341	55990342	rs11746801	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	5q11.2	AC022431.2	rs11746801-G	0.362931	3E-9		0.0124228	[0.0083-0.0165] unit increase	Affymetrix [NR] (imputed)	N
1012	chr5	55995034	55995035	rs16886113	24493630	Ahsan H	2014-02-03	Cancer Epidemiol Biomarkers Prev	A genome-wide association study of early-onset breast cancer identifies PFKM as a novel breast cancer gene and supports a common genetic spectrum for breast cancer at any age.	Breast cancer (early onset)	3,523 European ancestry young female cases, 2,702 European ancestry young female controls	3,470 European ancestry young female cases, 5,475 European ancestry young female controls	5q11.2	MAP3K1	rs16886113-?	0.08	4E-11		1.35	[1.23-1.47]	Illumina [1265548] (imputed)	N
1012	chr5	56002135	56002136	rs73756772	34356046	Oluwafemi OO	2021-07-01	Genes (Basel)	Genome-Wide Association Studies of Conotruncal Heart Defects with Normally Related Great Vessels in the United States.	Conotruncal heart defects with normally related great vessels (without 22q.11.2 deletion syndrome)	294 European ancestry cases, 2,976 European ancestry controls, 641 trios	NA	5q11.2		rs73756772-?	NR	5E-6				Illumina [3311160] (imputed)	N
1012	chr5	56007338	56007339	rs7709971	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	5q11.2		rs7709971-A	NR	2E-31		1.1764705	[1.15-1.21]	Affymetrix [7846216] (imputed)	N
1012	chr5	56007338	56007339	rs7709971	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Breast cancer	17,881 European ancestry cases, 410,350 European ancestry controls	NA	5q11.2		rs7709971-A	NR	6E-35		1.1953143	NR	Affymetrix [7846216] (imputed)	N
1012	chr5	56011356	56011357	rs7714232	32808324	Hu J	2020-08-17	Genet Epidemiol	Supervariants identification for breast cancer.	Breast cancer	5,653 cases, 28,241 controls	NA	5q11.2	NR	rs7714232-?		6E-22		1.22	[NR]	NR [41502298] (imputed)	N
1012	chr5	56011356	56011357	rs7714232	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous melanoma or hair colour	36,760 European ancestry cutaneous melanoma cases, 375,188 European ancestry controls, 352,662 European ancestry individuals	NA	5q11.2	AC008940.1	rs7714232-A	0.821327	3E-22				Affymetrix, Illumina [NR] (imputed)	N
1012	chr5	56011356	56011357	rs7714232	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	5q11.2		rs7714232-?	NR	6E-21				NR [~ 8900000] (imputed)	N
1012	chr5	56014502	56014503	rs116745876	30324795	Moen GH	2018-09-18	Eur J Endocrinol	Genetic determinants of glucose levels in pregnancy: genetic risk scores analysis and GWAS in the Norwegian STORK cohort	Fasting glucose in pregnancy (gestational week 14-16)	517 Scandinavian ancestry individuals	NA	5q11.2	MAP3K1	rs116745876-C	NR	2E-8		1.4	[0.91-1.89] unit increase	Illumina [8717487] (imputed)	N
1012	chr5	56017886	56017887	rs59270457	32339537	Roberts V	2020-04-24	J Invest Dermatol	Genome wide association study identifies genetic associations with perceived age.	Youthful appearance (self-reported)	423,992 European ancestry individuals	NA	5q11.2	MAP3K1	rs59270457-T	0.83771	3E-11		1.0397916	NR	Affymetrix [~ 9600000] (imputed)	N
1012	chr5	56019063	56019064	rs61055995	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Brown vs. black hair color	269,394 British ancestry brown hair individuals, 14,526 British ancestry black hair individuals	NA	5q11.2	MAP3K1	rs61055995-?	NR	8E-9		1.097213	NR	Affymetrix [9154080] (imputed)	N
1012	chr5	56019063	56019064	rs61055995	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	5q11.2	MAP3K1	rs61055995-?	NR	2E-10		1.0699764	NR	Affymetrix [9154080] (imputed)	N
1012	chr5	56021561	56021562	rs16886149	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	5q11.2		rs16886149-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1012	chr5	56023082	56023083	rs16886165	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Breast cancer	10,682 White British ancestry cases, 138,504 White British ancestry controls	NA	5q11.2		rs16886165-?	NR	1E-20		1.18785	[1.15-1.22]	NR [682398]	N
1012	chr5	56023082	56023083	rs16886165	19330030	Thomas G	2009-03-29	Nat Genet	A multistage genome-wide association study in breast cancer identifies two new risk alleles at 1p11.2 and 14q24.1 (RAD51L1).	Breast cancer	1,145 European ancestry cases, 1,142 European ancestry controls	8,625 European ancestry cases, 9,657 European ancestry controls	5q11.2	MAP3K1	rs16886165-G	0.15	5E-7		1.23	[1.12-1.35] (Het)	Illumina [528173]	N
1012	chr5	56029242	56029243	rs16886181	24493630	Ahsan H	2014-02-03	Cancer Epidemiol Biomarkers Prev	A genome-wide association study of early-onset breast cancer identifies PFKM as a novel breast cancer gene and supports a common genetic spectrum for breast cancer at any age.	Breast cancer (early onset)	3,523 European ancestry young female cases, 2,702 European ancestry young female controls	3,470 European ancestry young female cases, 5,475 European ancestry young female controls	5q11.2	MAP3K1	rs16886181-?	0.18	9E-14		1.26	[1.18-1.34]	Illumina [1265548] (imputed)	N
1012	chr5	56031883	56031884	rs889312	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	46,785 European ancestry cases, 42,892 European ancestry controls	NA	5q11.2	NR	rs889312-C	0.28	3E-27		1.12	[1.1-1.15]	Affymetrix, Illumina [~ 14000000] (imputed)	N
1012	chr5	56031883	56031884	rs889312	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	15,748 European ancestry cases, 18,084 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls	5q11.2	NR	rs889312-C	0.28	1E-39		1.12	[1.1-1.15]	Affymetrix, Illumina [~ 11600000] (imputed)	N
1012	chr5	56031883	56031884	rs889312	24493630	Ahsan H	2014-02-03	Cancer Epidemiol Biomarkers Prev	A genome-wide association study of early-onset breast cancer identifies PFKM as a novel breast cancer gene and supports a common genetic spectrum for breast cancer at any age.	Breast cancer (early onset)	3,523 European ancestry young female cases, 2,702 European ancestry young female controls	3,470 European ancestry young female cases, 5,475 European ancestry young female controls	5q11.2	MAP3K1	rs889312-?	0.29	1E-8		1.29	[NR]	Illumina [1265548] (imputed)	N
1012	chr5	56031883	56031884	rs889312	23535729	Michailidou K	2013-04-01	Nat Genet	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	5q11.2	MAP3K1	rs889312-C	0.28	3E-36		1.12	[1.10-1.15]	Affymetrix, Illumina [~ 2600000] (imputed)	N
1012	chr5	56031883	56031884	rs889312	20453838	Turnbull C	2010-05-09	Nat Genet	Genome-wide association study identifies five new breast cancer susceptibility loci.	Breast cancer	3,659 European ancestry cases, 4,897 European ancestry controls	12,576 European ancestry cases, 12,223 European ancestry controls	5q11.2	MAP3K1	rs889312-C	0.28	5E-9		1.22	[1.14-1.30]	Illumina [582886]	N
1012	chr5	56031883	56031884	rs889312	17529967	Easton DF	2007-05-27	Nature	Genome-wide association study identifies novel breast cancer susceptibility loci.	Breast cancer	390 European ancestry cases, 364 European ancestry controls	4,364 East Asian ancestry cases, 24,174 European ancestry controls, 3,564 East Asian ancestry controls, 24,391 European ancestry controls	5q11.2	MAP3K1	rs889312-C	0.28	7E-20		1.13	[1.10-1.16]	Perlegen [205586]	N
1012	chr5	56032939	56032940	rs1862626	27197191	Fehringer G	2016-04-20	Cancer Res	Cross-Cancer Genome-Wide Analysis of Lung, Ovary, Breast, Prostate, and Colorectal Cancer Reveals Novel Pleiotropic Associations.	Cancer (pleiotropy)	5,020 European ancestry lung cancer cases, 3,718 European ancestry lung adenocarcinoma cases, 3,422 European ancestry lung squamous cell carcinoma cases, 15,414 European ancestry colorectal cancer cases, 10,809 European ancestry breast cancer cases, 4,939 European ancestry estrogen receptor negative breast cancer cases, 1,098 European ancestry ovarian cancer cases, 2,556 European ancestry serous ovarian cancer cases, 715 European ancestry ovarian endometrioid carcinoma cases, 9,710 European ancestry prostate cancer cases, 4,450 European ancestry aggressive prostate cancer cases,  61,820 European ancestry controls	NA	5q11.2	Intergenic	rs1862626-T	NR	4E-12	(subset analysis)			Affymetrix, Illumina [9916564] (imputed)	N
1012	chr5	56034206	56034207	rs4700485	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric areal bone mineral density (radius)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	5q11.2	NR	rs4700485-G	0.285	9E-6		0.174269	[0.098-0.251] unit increase	Illumina [~ 6600000] (imputed)	N
1012	chr5	56040389	56040390	rs6450402	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	5q11.2		rs6450402-A	0.24	1E-23		10.04	z score increase	Affymetrix [9061022] (imputed)	N
1012	chr5	56040389	56040390	rs6450402	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	5q11.2	NR	rs6450402-A	0.2279	1E-17				NR [9056863] (imputed)	N
1012	chr5	56040389	56040390	rs6450402	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 117)	19,670 European ancestry individuals	NA	5q11.2		rs6450402-?	NR	2E-9				NR [9705931] (imputed)	N
1012	chr5	56040948	56040949	rs961848	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	5q11.2		rs961848-C	0.24	2E-16		8.23	z score increase	Affymetrix [9061022] (imputed)	N
1012	chr5	56040948	56040949	rs961848	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	5q11.2	NR	rs961848-C	0.2279	1E-17				NR [9056863] (imputed)	N
1012	chr5	56040948	56040949	rs961848	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	5q11.2	MAP3K1, SETD9, MIER3	rs961848-?		2E-10				NR [7428630] (imputed)	N
1012	chr5	56052694	56052695	rs62355900	28881265	Sobalska-Kwapis M	2017-09-01	Eur J Obstet Gynecol Reprod Biol	New variants near RHOJ and C2, HLA-DRA region and susceptibility to endometriosis in the Polish population-The genome-wide association study.	Endometriosis	171 European ancestry cases, 2,934 European ancestry controls	NA	5q11.2	NR	rs62355900-C	0.1394	5E-8		2.115	[1.608-2.783]	Illumina [274400]	N
1012	chr5	56052937	56052938	rs79160707	31757997	Low SK	2019-11-22	Sci Rep	Identification of two novel breast cancer loci through large-scale genome-wide association study in the Japanese population.	Breast cancer	6,669 Japanese ancestry cases, 21,930 Japanese ancestry controls	981 Japanese ancestry cases, 1,394 Japanese ancestry controls	5q11.2	MAP3K1	rs79160707-T	0.1	5E-8		1.2	[1.124-1.282]	Illumina [4946503] (imputed)	N
1012	chr5	56053534	56053535	rs62355901	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	5q11.2	NR	rs62355901-C	0.1602	3E-98	(EA)	0.1734	[0.16-0.19] unit increase	Illumina [~ 11800000] (imputed)	N
1012	chr5	56053722	56053723	rs62355902	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	5q11.2		rs62355902-A	NR	2E-86		0.87	[0.86-0.88]	Affymetrix, Illumina [NR] (imputed)	N
1012	chr5	56053722	56053723	rs62355902	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	5q11.2	MAP3K1	rs62355902-T	0.16	7E-98	(EA)	1.18	[1.15-1.21] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
1012	chr5	56053722	56053723	rs62355902	29058716	Milne RL	2017-10-23	Nat Genet	Identification of ten variants associated with risk of estrogen-receptor-negative breast cancer.	Breast cancer (estrogen-receptor negative)	14,135 European ancestry cases, 58,126 European ancestry controls	7,333 European ancestry cases, 42,468 European ancestry controls	5q11.2	NR	rs62355902-T	0.16	2E-6		1.06	[1.02-1.11] (Oncoarray)	Illumina [~ 11500000] (imputed)	N
1012	chr5	56054333	56054334	rs112776581	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Breast cancer	6,325 East Asian ancestry cases, 73,225 East Asian ancestry controls	NA	5q11.2		rs112776581-T	0.096941444	2E-9		0.19353114	[0.13-0.26] unit increase	Illumina [13401000] (imputed)	N
1012	chr5	56054333	56054334	rs112776581	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Breast cancer	17,389 European ancestry cases, 240,341 European ancestry controls, 6,325 East Asian ancestry cases, 73,225 East Asian ancestry controls	NA	5q11.2		rs112776581-T	NR	1E-21		0.1928	[0.15-0.23] unit increase	Affymetrix, Illumina [25794640] (imputed)	N
1012	chr5	56054333	56054334	rs112776581	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Breast cancer	5,552 Japanese ancestry cases, 89,731 Japanese ancestry controls	NA	5q11.2		rs112776581-T	0.09528834	6E-9		1.2234231	[1.143234678-1.309236175]	Illumina [8919992] (imputed)	N
1012	chr5	56054333	56054334	rs112776581	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	35,035 East Asian ancestry cases, 35,771 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	NA	5q11.2		rs112776581-T	0.11	4E-14	(conditional)	1.21	[1.15-1.27]	Affymetrix, Illumina [NR] (imputed)	N
1012	chr5	56070497	56070497	rs370194202	32902719	Hebbar P	2020-09-09	Hum Genet	Genome-wide landscape establishes novel association signals for metabolic traits in the Arab population.	Triglyceride levels	2,732 Kuwaiti ancestry individuals	NA	5q11.2	AC008940.1	rs370194202-?	NR	3E-7		5.134	NR unit decrease	Illumina [up to 1520000] (imputed)	N
1012	chr5	56074272	56074273	rs4412078	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	5q11.2	AC008940.1	rs4412078-C	NR	3E-9		0.0175419	[0.012-0.023] unit decrease	Affymetrix [321016] (imputed)	N
1012	chr5	56086804	56086805	rs10061757	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5q11.2		rs10061757-?	NR	4E-30				NR [~ 8900000] (imputed)	N
1012	chr5	56087898	56087899	rs144983009	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Alanine aminotransferase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	5q11.2	C5orf67, MAP3K1	rs144983009-?		1E-10		0.0348	[0.024-0.045] unit increase	Illumina [31500000] (imputed)	N
1012	chr5	56087898	56087899	rs144983009	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Alanine transaminase levels	134,182 Japanese ancestry individuals	NA	5q11.2	C5orf67, MAP3K1	rs144983009-?	NR	2E-10		0.03328	[0.023-0.044] unit decrease	Illumina [6108953] (imputed)	N
1012	chr5	56087909	56087910	rs9292122	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	5q11.2	NR	rs9292122-A	NR	5E-9		1.043	[1.03-1.06]	Affymetrix, Illumina [29235255] (imputed)	N
1012	chr5	56095585	56095586	rs6871246	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume x hypertension interaction (2df)	46,055 European ancestry individuals	NA	5q11.2	MAP3K1	rs6871246-T	0.1057	5E-6				Affymetrix, Illumina [9900000] (imputed)	N
1012	chr5	56095585	56095586	rs6871246	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume (adjusted for hypertension)	46,055 European ancestry individuals	NA	5q11.2	MAP3K1	rs6871246-T	0.1057	2E-6		0.0449	[0.026-0.064] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1012	chr5	56095585	56095586	rs6871246	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	48,454 European ancestry individuals	NA	5q11.2	MAP3K1	rs6871246-T	0.1057	4E-6		0.0431	[0.025-0.061] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1012	chr5	56096314	56096315	rs1862618	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Initial pursuit acceleration	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	5q11.2	MAP3K1	rs1862618-G	0.2374	2E-7				Illumina [4404269] (imputed)	N
1013	chr5	56104307	56104308	rs10461617	23209189	Tabassum R	2012-12-03	Diabetes	Genome-wide association study for type 2 diabetes in Indians identifies a new susceptibility locus at 2q21.	Type 2 diabetes	1,101 Indo-European ancestry cases, 1,027 Indo-European ancestry controls	3,607 Indo-European ancestry cases, 2,924 Indo-European ancestry controls, 1,184 Dravidian ancestry cases, 1,061 Dravidian ancestry controls, 11,285 European ancestry cases, 11,285 European ancestry controls	5q11.2	MAP3K1	rs10461617-A	0.21	4E-6	(All South Asians)	1.17	[1.09-1.25]	Illumina [536420]	N
1013	chr5	56104378	56104379	rs555806915	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	5q11.2		rs555806915-C	NR	3E-9		0.0189	[0.013-0.025] unit increase	Affymetrix, Illumina [20529698] (imputed)	N
1013	chr5	56120412	56120413	rs2432195	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	5q11.2	NR	rs2432195-C	0.173237	5E-10		0.0171231	[0.012-0.023] unit decrease	NR [NR]	N
1013	chr5	56122343	56122344	rs16886364	24493630	Ahsan H	2014-02-03	Cancer Epidemiol Biomarkers Prev	A genome-wide association study of early-onset breast cancer identifies PFKM as a novel breast cancer gene and supports a common genetic spectrum for breast cancer at any age.	Breast cancer (early onset)	3,523 European ancestry young female cases, 2,702 European ancestry young female controls	3,470 European ancestry young female cases, 5,475 European ancestry young female controls	5q11.2	MAP3K1	rs16886364-?	0.07	5E-12		1.36	[1.25-1.48]	Illumina [1265548] (imputed)	N
1013	chr5	56130321	56130322	rs832586	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	5q11.2	FAM178B, FAHD2B, ANKRD36, COX5B, ACTR1B, ZAP70, TMEM131	rs832586-?		5E-9				NR [7428630] (imputed)	N
1013	chr5	56134275	56134276	rs16886397	24493630	Ahsan H	2014-02-03	Cancer Epidemiol Biomarkers Prev	A genome-wide association study of early-onset breast cancer identifies PFKM as a novel breast cancer gene and supports a common genetic spectrum for breast cancer at any age.	Breast cancer (early onset)	3,523 European ancestry young female cases, 2,702 European ancestry young female controls	3,470 European ancestry young female cases, 5,475 European ancestry young female controls	5q11.2	MAP3K1	rs16886397-?	0.07	4E-12		1.36	[1.25-1.49]	Illumina [1265548] (imputed)	N
1013	chr5	56153391	56153392	rs1017226	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels (BMI interaction)	up to 15,007 European ancestry male individuals, up to 16,943 European ancestry female individuals	NA	5q11.2	MAP3K1	rs1017226-C	0.07	5E-6	(Men)	0.030341806	[0.017-0.043] unit increase	Affymetrix, Illumina [at least 188473] (imputed)	N
1013	chr5	56153391	56153392	rs1017226	24493630	Ahsan H	2014-02-03	Cancer Epidemiol Biomarkers Prev	A genome-wide association study of early-onset breast cancer identifies PFKM as a novel breast cancer gene and supports a common genetic spectrum for breast cancer at any age.	Breast cancer (early onset)	3,523 European ancestry young female cases, 2,702 European ancestry young female controls	3,470 European ancestry young female cases, 5,475 European ancestry young female controls	5q11.2	MAP3K1	rs1017226-?	0.08	6E-11		1.33	[1.22-1.45]	Illumina [1265548] (imputed)	N
1013	chr5	56155671	56155672	rs56069227	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	5q11.2	MAP3K1, AC008937.2	rs56069227-G	NR	3E-11		0.0556997	[0.039-0.072] unit increase	Affymetrix [319769] (imputed)	N
1013	chr5	56155671	56155672	rs56069227	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	5q11.2	MAP3K1, AC008937.2	rs56069227-G	NR	5E-11		0.0551722	[0.039-0.072] unit increase	Affymetrix [319769] (imputed)	N
1013	chr5	56155671	56155672	rs56069227	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	5q11.2	MAP3K1, AC008937.2	rs56069227-G	NR	5E-9		0.0495105	[0.033-0.066] unit increase	Affymetrix [321169] (imputed)	N
1013	chr5	56168711	56168712	rs2229882	24493630	Ahsan H	2014-02-03	Cancer Epidemiol Biomarkers Prev	A genome-wide association study of early-onset breast cancer identifies PFKM as a novel breast cancer gene and supports a common genetic spectrum for breast cancer at any age.	Breast cancer (early onset)	3,523 European ancestry young female cases, 2,702 European ancestry young female controls	3,470 European ancestry young female cases, 5,475 European ancestry young female controls	5q11.2	MAP3K1	rs2229882-?	0.06	1E-14		1.45	[1.32-1.60]	Illumina [1265548] (imputed)	N
1013	chr5	56170812	56170813	rs16886448	24493630	Ahsan H	2014-02-03	Cancer Epidemiol Biomarkers Prev	A genome-wide association study of early-onset breast cancer identifies PFKM as a novel breast cancer gene and supports a common genetic spectrum for breast cancer at any age.	Breast cancer (early onset)	3,523 European ancestry young female cases, 2,702 European ancestry young female controls	3,470 European ancestry young female cases, 5,475 European ancestry young female controls	5q11.2	MAP3K1	rs16886448-?	0.07	2E-12		1.37	[1.25-1.49]	Illumina [1265548] (imputed)	N
1013	chr5	56172000	56172001	rs9686160	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	150,545 East Asian ancestry individuals	NA	5q11.2		rs9686160-C	0.162794	3E-9		0.0271849	[0.018-0.036] unit decrease	Illumina [13478866] (imputed)	N
1013	chr5	56177442	56177443	rs702689	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	5q11.2		rs702689-G	0.29	2E-22		9.75	z score increase	Affymetrix [9061022] (imputed)	N
1013	chr5	56178110	56178111	rs3822625	24493630	Ahsan H	2014-02-03	Cancer Epidemiol Biomarkers Prev	A genome-wide association study of early-onset breast cancer identifies PFKM as a novel breast cancer gene and supports a common genetic spectrum for breast cancer at any age.	Breast cancer (early onset)	3,523 European ancestry young female cases, 2,702 European ancestry young female controls	3,470 European ancestry young female cases, 5,475 European ancestry young female controls	5q11.2	MAP3K1	rs3822625-?	0.07	5E-12		1.36	[1.24-1.48]	Illumina [1265548] (imputed)	N
1013	chr5	56188370	56188371	rs57803105	32902719	Hebbar P	2020-09-09	Hum Genet	Genome-wide landscape establishes novel association signals for metabolic traits in the Arab population.	Triglyceride levels	2,732 Kuwaiti ancestry individuals	NA	5q11.2	MAP3K1	rs57803105-?	NR	6E-7		5.0	NR unit decrease	Illumina [up to 1520000] (imputed)	N
1013	chr5	56195789	56195790	rs12655019	24493630	Ahsan H	2014-02-03	Cancer Epidemiol Biomarkers Prev	A genome-wide association study of early-onset breast cancer identifies PFKM as a novel breast cancer gene and supports a common genetic spectrum for breast cancer at any age.	Breast cancer (early onset)	3,523 European ancestry young female cases, 2,702 European ancestry young female controls	3,470 European ancestry young female cases, 5,475 European ancestry young female controls	5q11.2	MAP3K1	rs12655019-?	0.1	3E-10		1.27	[1.18-1.37]	Illumina [1265548] (imputed)	N
1013	chr5	56196603	56196604	rs96844	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	5q11.2	ANKRD55	rs96844-G	0.2622	5E-8		1.04	[1.03-1.05]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1013	chr5	56199201	56199202	rs832540	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	5q11.2	MAP3K1, SETD9	rs832540-A	0.609	2E-8		0.0322	[0.021-0.044] unit decrease	NR [8041861] (imputed)	N
1013	chr5	56206072	56206073	rs33321	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	5q11.2		rs33321-T	NR	1E-19		0.0136	[0.011-0.017] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1013	chr5	56221536	56221537	rs79354983	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	5q11.2	NR	rs79354983-A	0.905283	5E-19		0.0121305	[0.0093-0.0149] unit increase	Affymetrix [16582909] (imputed)	N
1013	chr5	56221536	56221537	rs79354983	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	5q11.2	NR	rs79354983-A	0.904852	3E-21		0.0164801	[0.013-0.02] unit increase	Affymetrix [16582621] (imputed)	N
1013	chr5	56221536	56221537	rs79354983	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	5q11.2	NR	rs79354983-A	0.905283	4E-16		0.0125608	[0.0094-0.0157] unit increase	Affymetrix [16582965] (imputed)	N
1013	chr5	56221536	56221537	rs79354983	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	5q11.2	NR	rs79354983-A	0.904852	2E-17		0.0163328	[0.012-0.02] unit increase	Affymetrix [16582614] (imputed)	N
1013	chr5	56222119	56222120	rs11957276	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	5q11.2		rs11957276-G	NR	4E-7		1.091	[1.055-1.128]	Affymetrix [7846216] (imputed)	N
1013	chr5	56222119	56222120	rs11957276	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Breast cancer	17,881 European ancestry cases, 410,350 European ancestry controls	NA	5q11.2		rs11957276-G	NR	5E-11		1.0933	NR	Affymetrix [7846216] (imputed)	N
1013	chr5	56224719	56224720	rs61154548	31757997	Low SK	2019-11-22	Sci Rep	Identification of two novel breast cancer loci through large-scale genome-wide association study in the Japanese population.	Breast cancer	6,669 Japanese ancestry cases, 21,930 Japanese ancestry controls	981 Japanese ancestry cases, 1,394 Japanese ancestry controls	5q11.2	MIER3	rs61154548-T	0.0645	8E-7		1.20178	[1.11733-1.29261]	Illumina [4946503] (imputed)	N
1013	chr5	56224999	56224999	rs144092933	32682390	Wang W	2020-07-18	BMC Genomics	Heritability and genome-wide association analyses of fasting plasma glucose in Chinese adult twins.	Fasting plasma glucose	382 Chinese ancestry twin pairs	NA	5q11.2	MIER3	rs144092933-?		1E-6				NR [7405822] (imputed)	N
1014	chr5	56254484	56254485	rs2662027	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	5q11.2	NR	rs2662027-?	NR	1E-7		0.0369182	[0.023-0.051] unit decrease	Illumina [34656550] (imputed)	N
1014	chr5	56256482	56256483	rs7726354	24493630	Ahsan H	2014-02-03	Cancer Epidemiol Biomarkers Prev	A genome-wide association study of early-onset breast cancer identifies PFKM as a novel breast cancer gene and supports a common genetic spectrum for breast cancer at any age.	Breast cancer (early onset)	3,523 European ancestry young female cases, 2,702 European ancestry young female controls	3,470 European ancestry young female cases, 5,475 European ancestry young female controls	5q11.2	MAP3K1	rs7726354-?	0.06	7E-11		1.37	[1.24-1.50]	Illumina [1265548] (imputed)	N
1014	chr5	56259152	56259159	rs755186217	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	5q11.2	MIER3	rs755186217-A	0.0013	2E-6		1.1388	[0.67-1.6] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1014	chr5	56259152	56259159	rs755186217	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	5q11.2	MIER3	rs755186217-A	0.0013	2E-6		1.1388	[0.67-1.6] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1014	chr5	56260605	56260606	rs6890270	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	5q11.2	NR	rs6890270-G	0.1871	5E-67	(EA)	0.1349	[0.12-0.15] unit increase	Illumina [~ 11800000] (imputed)	N
1014	chr5	56273692	56273693	rs10036895	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Breast cancer	10,682 White British ancestry cases, 138,504 White British ancestry controls	NA	5q11.2		rs10036895-?	NR	2E-12		1.11114	[1.08-1.14]	NR [682398]	N
1015	chr5	56378481	56378482	rs331044	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	5q11.2	NR	rs331044-?	NR	1E-8				Affymetrix [NR]	N
1015	chr5	56379099	56379099	rs201942675	31626034	Thomsen H	2019-10-11	Melanoma Res	Genome-wide study on uveal melanoma patients finds association to DNA repair gene TDP1.	Choroidal melanoma	438 European ancestry cases, 5,199 European ancestry controls	NA	5q11.2		rs201942675-TA	0.07	5E-6		1.7		Illumina [10258281] (imputed)	N
1015	chr5	56456594	56456595	rs6450419	32009195	Condreay LD	2020-02-03	Rheumatol Int	Pharmacogenetic investigation of efficacy response to mepolizumab in eosinophilic granulomatosis with polyangiitis.	Accrued duration of remission in mepolizumab-treated eosinophilic granulomatosis with polyangiitis	61 individuals	NA	5q11.2	NR	rs6450419-?	NR	6E-6		0.8618	[0.52-1.2] unit decrease	Affymetrix [7154205] (imputed)	N
1015	chr5	56468669	56468670	rs72761770	33768542	Liu Y	2021-03-26	Clin Pharmacol Ther	Class II HLA Variants Associate with Risk of Pegaspargase Hypersensitivity.	Asparaginase hypersensitivity in acute lymphoblastic leukemia	310 African ancestry individuals, 798 Native American individuals, 387 individuals	NA	5q11.2	NR	rs72761770-A	NR	8E-7		2.8	[NR]	Illumina [NR] (imputed)	N
1015	chr5	56468669	56468670	rs72761770	33768542	Liu Y	2021-03-26	Clin Pharmacol Ther	Class II HLA Variants Associate with Risk of Pegaspargase Hypersensitivity.	Asparaginase hypersensitivity in acute lymphoblastic leukemia	310 African ancestry individuals, 798 Native American individuals, 112 Asian ancestry individuals, 387 individuals	NA	5q11.2	NR	rs72761770-A	NR	4E-7		2.87		Illumina [NR] (imputed)	N
1015	chr5	56485427	56485428	rs114703252	32701715	Zhang Y	2020-07-21	J Bone Joint Surg Am	PPARGC1B Is Associated with Nontraumatic Osteonecrosis of the Femoral Head: A Genomewide Association Study on a Chart-Reviewed Cohort.	Nontraumatic osteonecrosis of the femoral head	118 European ancestry cases, 56,811 European ancestry controls	NA	5q11.2	GPBP1	rs114703252-A	0.016	5E-6		3.64	[2.09-6.35]	Illumina [3905175] (imputed)	N
1016	chr5	56589541	56589542	rs111304266	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	5q11.2	GPBP1, ACTBL2	rs111304266-C		3E-8		0.37	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1016	chr5	56599589	56599590	rs11739459	33768542	Liu Y	2021-03-26	Clin Pharmacol Ther	Class II HLA Variants Associate with Risk of Pegaspargase Hypersensitivity.	Asparaginase hypersensitivity in acute lymphoblastic leukemia	310 African ancestry individuals, 798 Native American individuals, 387 individuals	NA	5q11.2	NR	rs11739459-A	NR	9E-9		2.6	[NR]	Illumina [NR] (imputed)	N
1016	chr5	56603519	56603520	rs79377225	33768542	Liu Y	2021-03-26	Clin Pharmacol Ther	Class II HLA Variants Associate with Risk of Pegaspargase Hypersensitivity.	Asparaginase hypersensitivity in acute lymphoblastic leukemia	310 African ancestry individuals, 798 Native American individuals, 112 Asian ancestry individuals, 387 individuals	NA	5q11.2	GPBP1	rs79377225-T	NR	3E-8		2.7		Illumina [NR] (imputed)	N
1017	chr5	56628949	56628950	rs10035624	32568366	Raghavan NS	2020-06-22	JAMA Neurol	Association Between Common Variants in RBFOX1, an RNA-Binding Protein, and Brain Amyloidosis in Early and Preclinical Alzheimer Disease.	Brain amyloid deposition (PET imaging)	4,120 Europea ancestry individuals, 89 African American individuals, 105 Hispanic individuals	NA	5q11.2	NR	rs10035624-T		4E-6		0.2791	[0.16-0.4] unit increase	Illumina [NR] (imputed)	N
1017	chr5	56639644	56639645	rs143300607	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Uterine fibroids (MTAG)	5,236 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	5q11.2	Intergenic	rs143300607-?		8E-6		1.0526316	[1.03-1.09]	Illumina [7645193] (imputed)	N
1017	chr5	56640540	56640541	rs995398	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Perceived intensity of sucrose	686 European ancestry twins	NA	5q11.2	CTD-2023N9.1	rs995398-C	0.58	9E-6		0.39	[0.21-0.57] unit increase	Illumina [5833901] (imputed)	N
1017	chr5	56653870	56653871	rs10071932	26993346	Schott JM	2016-03-15	Alzheimers Dement	Genetic risk factors for the posterior cortical atrophy variant of Alzheimer's disease.	Posterior cortical atrophy and Alzheimer's disease	293 cases, 10,547 healthy controls	NA	5q11.2	Intergenic	rs10071932-?	NR	9E-6		1.4506525	[NR]	Illumina [~ 5900000] (imputed)	N
1017	chr5	56657420	56657421	rs6883723	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	5q11.2	Intergenic	rs6883723-C	0.6767	9E-10	(MTAG)	0.0086	[0.0059-0.0113] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1017	chr5	56664595	56664596	rs13157551	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	5q11.2	ENSG00000250961	rs13157551-?	NR	2E-9		0.012148838	[0.0082-0.0161] unit increase	NR [7306098]	N
1017	chr5	56666499	56666500	rs10052004	23212062	Fanous AH	2012-12-01	Am J Psychiatry	Genome-wide association study of clinical dimensions of schizophrenia: polygenic effect on disorganized symptoms.	Schizophrenia	2,454 European ancestry cases	NA	5q11.2	intergenic	rs10052004-?	NR	4E-6	(Positive symptoms)	0.0921	[NR] unit decrease	Affymetrix [696491]	N
1017	chr5	56677645	56677646	rs10940540	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	5q11.2		rs10940540-A	0.5522	3E-8		0.0078	[0.0051-0.0105] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1017	chr5	56730382	56730383	rs10472003	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Uterine fibroids	5,236 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	5q11.2	Intergenic	rs10472003-?		6E-6		1.1111112	[1.06-1.18]	Illumina [7645193] (imputed)	N
1017	chr5	56752647	56752648	rs554379257	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	Height	19,965 British ancestry individuals from 6863 families.	NA	5q11.2	CTD-2023 N9.1	rs554379257-T	6.0E-4	5E-8		0.111964226	[0.072-0.152] m decrease	Illumina [24111857] (imputed)	N
1018	chr5	56776810	56776811	rs11950494	28738859	de Jong K	2017-07-24	Respir Res	Genes and pathways underlying susceptibility to impaired lung function in the context of environmental tobacco smoke exposure.	Forced expiratory volume in 1 second (environmental tobacco smoke interaction)	10,817 European ancestry individuals	1,156 European ancestry individuals, 1,276 individuals	5q11.2	ACTBL2	rs11950494-G	0.08	4E-6		115.0	[66-164] unit decrease	Illumina [227981]	N
1018	chr5	56810137	56810138	rs6892553	24124408	Hong KW	2013-09-30	Genomics Inform	Genome-wide association study of orthostatic hypotension and supine-standing blood pressure changes in two korean populations.	Orthostatic hypotension	667 Korean ancestry cases,  5,761 Korean ancestry controls	NA	5q11.2	ACTBL2	rs6892553-G	0.137	2E-6	(Delta DBP)	1.08	[NR] mmHg increase	Affymetrix [333651]	N
1018	chr5	56830602	56830603	rs9292139	33888571	Lee S	2021-04-22	Thorax	Novel recessive locus for body mass index in childhood asthma.	Body mass index in childhood asthma	892 Hispanic or Latin American trios	216 European ancestry trios, 28 African American trios, 19 Latin American trios, 23 trios	5q11.2		rs9292139-?	NR	5E-8	(recessive model)			NR [8689950]	N
1018	chr5	56843184	56843185	rs6895539	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	5q11.2	NR	rs6895539-?	NR	5E-6	(Native Hawaiian)	0.805	[NR] unit increase	Illumina [up to 11892802] (imputed)	N
1019	chr5	56922084	56922085	rs2910490	25461247	Lehmann DS	2015-02-01	Pharmacogenet Genomics	Genome-wide association study of virologic response with efavirenz-containing or abacavir-containing regimens in AIDS clinical trials group protocols.	Response to efavirenz-containing treatment in HIV 1 infection (virologic failure)	Up to 737 European ancestry individuals, Up to 545 Black individuals, Up to 314 Hispanic individuals	NA	5q11.2	NR	rs2910490-C	NR	9E-6	(phenotype 3)	1.49	[NR]	Illumina [> 8000000] (imputed)	N
1019	chr5	56942557	56942558	rs76395602	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	5q11.2	AC008780.1, ACTBL2, SALL4P1	rs76395602-C	NR	5E-6	(number of awakenings after sleep onset, weekdays)	0.1229	[0.07-0.175] unit decrease	Affymetrix [7141204] (imputed)	N
1019	chr5	56945687	56945688	rs34265761	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	5q11.2	Intergenic	rs34265761-T	0.1515	4E-8	(MTAG)	0.0126	[0.0081-0.0171] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1019	chr5	56945687	56945688	rs34265761	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	5q11.2	Intergenic	rs34265761-T	0.1664	3E-8	(MTAG)	0.017	[0.011-0.023] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1019	chr5	56952653	56952654	rs170741	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	5q11.2	ACTBL2, SALL4P1	rs170741-C	NR	3E-6	(number of awakenings after sleep onset)	0.1162	[0.068-0.165] unit decrease	Affymetrix [7141204] (imputed)	N
1019	chr5	57011468	57011469	rs2191445	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Hypertrophic cardiomyopathy (MTAG)	1,733 European ancestry cases, 6,628 European ancestry controls	NA	5q11.2	ACTBL2	rs2191445-T	0.7841	4E-9		1.2891718	1.17-1.43	Illumina [6530233] (imputed)	N
1019	chr5	57011468	57011469	rs2191445	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Hypertrophic cardiomyopathy	1,733 European ancestry cases, 6,628 European ancestry controls	2,694 European ancestry cases, 47,486 European ancestry controls	5q11.2	ACTBL2	rs2191445-T	0.7841	2E-10		1.2398063	1.16-1.32	Illumina [6530233] (imputed)	N
1020	chr5	57047022	57047023	rs185373790	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	5q11.2	intergenic	rs185373790-C	0.0123570821152515	1E-6	(G_Butyricicoccus_RNT)	0.473918	[0.28-0.67] unit increase	Illumina [7711310] (imputed)	N
1020	chr5	57070532	57070533	rs1023572	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	5q11.2		rs1023572-?	NR	7E-12				NR [~ 8900000] (imputed)	N
1020	chr5	57091782	57091783	rs854037	31097437	Plotnikov D	2019-05-16	Br J Ophthalmol	Association between birth weight and refractive error in adulthood: a Mendelian randomisation study.	Birth weight	188,039 European ancestry individuals	NA	5q11.2	NR	rs854037-A	0.2	4E-13		0.03	[0.022-0.038] z score increase	Affymetrix [up to 10400000] (imputed)	N
1020	chr5	57091782	57091783	rs854037	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	5q11.2	ACTBL2	rs854037-A	0.808978	2E-6		0.018658	[0.011-0.026] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
1020	chr5	57091782	57091783	rs854037	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	5q11.2	ACTBL2	rs854037-A	0.814161	9E-16		0.026507	[0.02-0.033] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1020	chr5	57091782	57091783	rs854037	27680694	Horikoshi M	2016-10-13	Nature	Genome-wide associations for birth weight and correlations with adult disease.	Birth weight	133,903 European ancestry individuals, 6,635 African American individuals, 420 Turkish ancestry individuals, 365 Moroccan ancestry individuals, 395 Surinamese ancestry individuals, 840 Chinese ancestry individuals.	9,799 European ancestry individuals, 1,449 Filipino ancestry individuals.	5q11.2	Intergenic	rs854037-A	0.8	3E-8		0.0251	[0.016-0.034] unit increase	Affymetrix, Illumina [at least 22434434] (imputed)	N
1020	chr5	57095010	57095011	rs12515541	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	5q11.2		rs12515541-?	NR	8E-9				NR [~ 8900000] (imputed)	N
1020	chr5	57095010	57095011	rs12515541	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	5q11.2	ACTBL2	rs12515541-T	0.6111	9E-13		0.1104	[0.08-0.141] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1020	chr5	57107988	57107989	rs981883	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	5q11.2		rs981883-A	0.3886	7E-12		0.0099	[0.0072-0.0126] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1020	chr5	57109716	57109717	rs9763743	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	5q11.2	Intergenic	rs9763743-A	0.2324	3E-10	(MTAG)	0.0134	[0.0093-0.0175] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1020	chr5	57109716	57109717	rs9763743	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	5q11.2	Intergenic	rs9763743-A	0.2345	2E-10	(MTAG)	0.0171	[0.012-0.022] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1020	chr5	57114079	57114080	rs7724301	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	5q11.2	Intergenic	rs7724301-T	0.7492	4E-15	(MTAG)	0.0149	[0.011-0.019] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1020	chr5	57114079	57114080	rs7724301	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	5q11.2		rs7724301-T	0.7463	1E-10	(conditional-joint)	0.0104	[0.0073-0.0135] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1020	chr5	57114079	57114080	rs7724301	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	5q11.2	Intergenic	rs7724301-T	0.7463	5E-15	(MTAG)	0.0118	[0.0089-0.0147] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1020	chr5	57114079	57114080	rs7724301	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	5q11.2	NR	rs7724301-?	NR	4E-6		4.594	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1020	chr5	57114950	57114951	rs4700229	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	5q11.2		rs4700229-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1020	chr5	57114950	57114951	rs4700229	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	5q11.2	NR	rs4700229-A	0.426075	3E-11		0.0207924	[0.015-0.027] unit decrease	NR [19129689] (imputed)	N
1020	chr5	57133144	57133145	rs4513644	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	5q11.2	LINC02225	rs4513644-T	0.794	8E-7		0.067	[0.04-0.094] unit increase	Affymetrix, Illumina [7374092] (imputed)	N
1020	chr5	57133249	57133250	rs1835874	31681408	Yang XL	2019-10-11	Front Genet	Three Novel Loci for Infant Head Circumference Identified by a Joint Association Analysis.	Birth weight (MTAG)	up to 182,902 European ancestry individuals	NA	5q11.2	NR	rs1835874-T	0.8	1E-8		0.027038608	[0.018-0.036] unit increase	NR [1977400] (imputed)	N
1020	chr5	57135049	57135050	rs1835873	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	5q11.2		rs1835873-?	NR	2E-12				NR [~ 8900000] (imputed)	N
1020	chr5	57137498	57137499	rs11744848	26268530	Ramanan VK	2015-08-11	Brain	GWAS of longitudinal amyloid accumulation on 18F-florbetapir PET in Alzheimer's disease implicates microglial activation gene IL1RAP.	Longitudinal change in brain amyloid plaque burden	41 European ancestry Alzheimer's disease cases, 294 European ancestry Mild Cognitive Impairment cases, 160 European ancestry cognitively normal individuals	NA	5q11.2	intergenic	rs11744848-?	0.13	3E-6		0.63	[0.38-0.88] unit decrease	Illumina [6112217] (imputed)	N
1021	chr5	57156324	57156325	rs4699913	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	5q11.2	Intergenic	rs4699913-G	0.2017	1E-10		0.0183	[0.013-0.024] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1021	chr5	57172077	57172078	rs4432842	23202124	Horikoshi M	2012-12-02	Nat Genet	New loci associated with birth weight identify genetic links between intrauterine             growth and adult height and metabolism.	Birth weight	Up to 26,836 European ancestry individuals	Up to 42,519 European ancestry individuals	5q11.2	intergenic	rs4432842-C	0.30	5E-8		0.034	[0.022-0.046] gram decrease	Affymetrix, Illumina [~ 2700000] (imputed)	N
1021	chr5	57179503	57179504	rs1020661	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	5q11.2		rs1020661-?	NR	8E-9				NR [~ 8900000] (imputed)	N
1021	chr5	57186662	57186663	rs35100619	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	5q11.2	NR	rs35100619-A	0.1115	6E-6	(EA)	0.0507	[0.029-0.073] unit increase	Illumina [~ 11800000] (imputed)	N
1021	chr5	57214816	57214817	rs10041935	32699080	Brhane Y	2020-07-22	Cancer Epidemiol Biomarkers Prev	Genetic determinants of lung cancer prognosis in never smokers: A pooled analysis in the International Lung Cancer Consortium.	Lung adenocarcinoma (survival time) in never smokers	1,065 European ancestry individuals	871 Japanese ancestry individuals	5q11.2	Intergenic	rs10041935-A	NR	7E-7	(EA)	0.73	[0.65-0.83]	Illumina [629283] (imputed)	N
1021	chr5	57214816	57214817	rs10041935	24925725	Chung SA	2014-06-12	J Am Soc Nephrol	Lupus nephritis susceptibility loci in women with systemic lupus erythematosus.	Lupus nephritis in systemic lupus erythematosus	588 European ancestry cases, 1,412 European ancestry controls	NA	5q11.2	intergenic	rs10041935-C	NR	3E-6	(Recessive)	2.5	[1.71-3.66]	Affymetrix, Illumina [1621689] (imputed)	N
1021	chr5	57227212	57227215	rs139563996	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	5q11.2		rs139563996-T	0.184548	5E-11		0.019091755	[0.013-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1021	chr5	57274319	57274320	rs13189262	30621171	Coltell O	2019-01-04	Nutrients	Genome-Wide Association Study (GWAS) on Bilirubin Concentrations in Subjects with Metabolic Syndrome: Sex-Specific GWAS Analysis and Gene-Diet Interactions in a Mediterranean Population.	Serum bilirubin levels x sex interaction in metabolic syndrome	188 European ancestry male individuals, 242 European ancestry female individuals	NA	5q11.2	intergenic	rs13189262-?	NR	1E-6				Illumina [622468]	N
1021	chr5	57274611	57274612	rs62360185	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	5q11.2	NR	rs62360185-G	0.190708	8E-11		0.015947	[0.011-0.021] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
1022	chr5	57302019	57302020	rs58670779	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	5q11.2	intergenic	rs58670779-C	0.2187	7E-9		0.02512496	[0.017-0.034] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1022	chr5	57311557	57311558	rs10472030	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	5q11.2	Intergenic	rs10472030-T	0.287	3E-9	(MTAG)	0.0109	[0.0074-0.0144] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1022	chr5	57311557	57311558	rs10472030	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	5q11.2	Intergenic	rs10472030-T	0.2904	9E-10	(MTAG)	0.0088	[0.0061-0.0115] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1022	chr5	57311862	57311863	rs62368409	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	5q11.2	intergenic	rs62368409-C	0.2183	7E-9		0.02509097	[0.017-0.034] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1022	chr5	57315634	57315635	rs11744663	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	5q11.2		rs11744663-A	NR	2E-9		0.0156	[0.011-0.021] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1022	chr5	57315634	57315635	rs11744663	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	5q11.2	NR	rs11744663-A	0.191806	3E-12		0.019668559	[0.014-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1022	chr5	57315634	57315635	rs11744663	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	5q11.2	NR	rs11744663-A	0.191879	2E-16		0.023446271	[0.018-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
1022	chr5	57315634	57315635	rs11744663	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	5q11.2	NR	rs11744663-A	0.191872	4E-14		0.02150899	[0.016-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1022	chr5	57315634	57315635	rs11744663	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	5q11.2		rs11744663-A	0.19188	3E-9		0.016866937	[0.011-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1022	chr5	57315634	57315635	rs11744663	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	5q11.2		rs11744663-A	0.191865	5E-19		0.025230791	[0.02-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
1022	chr5	57315634	57315635	rs11744663	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	5q11.2		rs11744663-A	0.191861	4E-19		0.02529875	[0.02-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
1022	chr5	57315634	57315635	rs11744663	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q11.2	NR	rs11744663-A	0.174992	1E-14				Affymetrix, Illumina [24649327] (imputed)	N
1022	chr5	57315634	57315635	rs11744663	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	5q11.2	NR	rs11744663-A	0.190499	2E-15		0.018732	[0.014-0.023] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1022	chr5	57315634	57315635	rs11744663	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q11.2	NR	rs11744663-A	0.178613	4E-11				Affymetrix, Illumina [23114412] (imputed)	N
1022	chr5	57315634	57315635	rs11744663	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	5q11.2	NR	rs11744663-A	0.190812	6E-16		0.019366	[0.015-0.024] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1022	chr5	57315634	57315635	rs11744663	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	5q11.2		rs11744663-?	NR	1E-12				NR [~ 8900000] (imputed)	N
1022	chr5	57317540	57317541	rs7736576	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	5q11.2	intergenic	rs7736576-C	0.2197	3E-9		0.0256351	[0.017-0.034] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1022	chr5	57317540	57317541	rs7736576	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	5q11.2	intergenic	rs7736576-C	0.2197	1E-9		0.02626229	[0.018-0.035] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1022	chr5	57320953	57320954	rs1844437	21302353	Perroud N	2010-12-28	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of hoarding traits.	Hoarding	3,304 European ancestry individuals	NA	5q11.2	intergenic	rs1844437-C	0.22	2E-6		0.62	[NR] unit decrease	Illumina [1517033] (imputed)	N
1022	chr5	57321090	57321092	rs5868087	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	5q11.2		rs5868087-G	0.785854	5E-9		0.015748594	[0.01-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1022	chr5	57323118	57323119	rs6861883	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	5q11.2		rs6861883-T	NR	2E-8		0.0148	[0.0097-0.0199] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
1022	chr5	57351599	57351600	rs10061189	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	5q11.2		rs10061189-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1022	chr5	57351599	57351600	rs10061189	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	5q11.2	NR	rs10061189-G	0.444368	5E-10		0.0194035	[0.013-0.026] unit decrease	NR [19129689] (imputed)	N
1022	chr5	57355530	57355531	rs6859725	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (unclassified genus belonging to family Ruminococcaceae)	1,068 Japanese ancestry individuals	NA	5q11.2	intergenic	rs6859725-C	0.30	2E-6	(male)	0.0944	[0.056-0.133] unit increase	Illumina [6380737] (imputed)	N
1022	chr5	57377871	57377872	rs34810059	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	5q11.2	PGAM1P1	rs34810059-?		4E-6		1.614726	[1.33-2.00]	Illumina [9389922] (imputed)	N
1022	chr5	57392078	57392079	rs72753349	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	5q11.2	NR	rs72753349-T	0.04132899999999995	3E-8		0.0113378	[0.0072-0.0155] unit increase	Affymetrix [16582909] (imputed)	N
1022	chr5	57392078	57392079	rs72753349	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	5q11.2	NR	rs72753349-T	0.04132899999999995	9E-9		0.0128002	[0.0082-0.0174] unit increase	Affymetrix [16582965] (imputed)	N
1023	chr5	57430238	57430239	rs6868805	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	5q11.2	PLK2	rs6868805-?	NR	4E-10		1.054741	NR	Affymetrix [9154080] (imputed)	N
1023	chr5	57435800	57435801	rs4389640	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5q11.2	C5orf29	rs4389640-?	NR	4E-6	(phosphoenolpyruvic acid)	0.20833564	[0.12-0.3] unit increase	Affymetrix [at least 2500000] (imputed)	N
1023	chr5	57448369	57448369	rs34151584	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	5q11.2		rs34151584-TA	0.387493	3E-13		0.016735433	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1023	chr5	57448369	57448369	rs34151584	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	5q11.2		rs34151584-TA	0.387496	2E-11		0.015434059	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1023	chr5	57453717	57453718	rs10079220	31598132	Donati G	2019-06-30	Mind Brain Educ	Genome-Wide Association Study of Latent Cognitive Measures in Adolescence: Genetic Overlap With Intelligence and Education.	Working memory	4,611 European ancestry adolescents	NA	5q11.2	PGAM1P1	rs10079220-?	NR	7E-6		0.307	[0.17-0.44] unit decrease	Illumina [6319684] (imputed)	N
1023	chr5	57455042	57455043	rs764629	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	5q11.2	PGAM1P1	rs764629-G	0.379317	4E-13		0.016748643	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1023	chr5	57480692	57480693	rs2964186	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Ejection fraction in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	5q11.2	NR	rs2964186-?	NR	8E-7				Affymetrix [5486770] (imputed)	N
1023	chr5	57502676	57502677	rs11325450	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	5q11.2	NR	rs11325450-C	0.489946	3E-9		0.013361292	[0.0089-0.0178] unit decrease	Affymetrix [93095623] (imputed)	N
1023	chr5	57511569	57511570	rs79444246	34815687	Wu SE	2021-11-16	J Inflamm Res	A Genome-Wide Association Study Identifies Novel Risk Loci for Sarcopenia in a Taiwanese Population.	Low skeletal muscle mass index	35 Taiwanese ancestry cases, 61 Taiwanese ancestry controls	NA	5q11.2		rs79444246-?	0.1105	4E-6		8.333		Affymetrix [NR]	N
1023	chr5	57523477	57523478	rs55966191	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	5q11.2	NR	rs55966191-?	NR	5E-7	(AA)	1.042	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1023	chr5	57523477	57523478	rs55966191	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	5q11.2	NR	rs55966191-?	NR	9E-8	(AA)	0.9971	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1023	chr5	57525294	57525295	rs2910583	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	5q11.2	PGAM1P1	rs2910583-T	0.4618	6E-9		0.011811586	[0.0078-0.0158] unit increase	Affymetrix [up to 18485882] (imputed)	N
1023	chr5	57526701	57526702	rs72755727	32119686	Dahlin A	2020-03-02	PLoS One	Genome-wide interaction study reveals age-dependent determinants of responsiveness to inhaled corticosteroids in individuals with asthma.	Adverse response to inhaled corticosteroid treatment x age interaction in asthma	407 European ancestry cases, 376 European ancestry controls	287 European ancestry cases, 251 European ancestry controls	5q11.2	NR	rs72755727-T	NR	3E-7		2.67	[1.71-4.17]	Affymetrix, Illumina [8589102] (imputed)	N
1023	chr5	57527885	57527886	rs2910580	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q11.2	NR	rs2910580-A	0.670841	6E-15				Affymetrix, Illumina [23467995] (imputed)	N
1023	chr5	57528989	57528991	rs561512331	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	5q11.2	NR	rs561512331-C	0.56504	4E-11		0.015099622	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1023	chr5	57528989	57528991	rs561512331	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	5q11.2		rs561512331-C	0.565051	2E-10		0.014505566	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
1023	chr5	57532774	57532775	rs2964199	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	5q11.2		rs2964199-C	NR	4E-11		0.0148	[0.01-0.019] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
1023	chr5	57532774	57532775	rs2964199	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	5q11.2		rs2964199-T	0.318364	8E-11		0.015561995	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1023	chr5	57532774	57532775	rs2964199	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	5q11.2	NR	rs2964199-C	0.683123	3E-12		0.014172	[0.01-0.018] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1023	chr5	57532774	57532775	rs2964199	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	5q11.2	Intergenic	rs2964199-T	0.3047	4E-9	(MTAG)	0.0105	[0.007-0.014] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1023	chr5	57532774	57532775	rs2964199	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	5q11.2		rs2964199-T	0.3149	5E-11		0.0099	[0.007-0.0128] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1023	chr5	57532774	57532775	rs2964199	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	5q11.2	Intergenic	rs2964199-T	0.3149	1E-12	(MTAG)	0.01	[0.0073-0.0127] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1023	chr5	57532961	57532962	rs1477347	32119686	Dahlin A	2020-03-02	PLoS One	Genome-wide interaction study reveals age-dependent determinants of responsiveness to inhaled corticosteroids in individuals with asthma.	Adverse response to inhaled corticosteroid treatment x age interaction in asthma	407 European ancestry cases, 376 European ancestry controls	287 European ancestry cases, 251 European ancestry controls	5q11.2	NR	rs1477347-A	NR	2E-7		2.71	[1.73-4.24]	Affymetrix, Illumina [8589102] (imputed)	N
1023	chr5	57536731	57536732	rs2052548	32119686	Dahlin A	2020-03-02	PLoS One	Genome-wide interaction study reveals age-dependent determinants of responsiveness to inhaled corticosteroids in individuals with asthma.	Adverse response to inhaled corticosteroid treatment x age interaction in asthma	407 European ancestry cases, 376 European ancestry controls	287 European ancestry cases, 251 European ancestry controls	5q11.2	NR	rs2052548-C	NR	2E-7		2.73	[1.74-4.27]	Affymetrix, Illumina [8589102] (imputed)	N
1023	chr5	57538753	57538754	rs72755734	32119686	Dahlin A	2020-03-02	PLoS One	Genome-wide interaction study reveals age-dependent determinants of responsiveness to inhaled corticosteroids in individuals with asthma.	Adverse response to inhaled corticosteroid treatment x age interaction in asthma	407 European ancestry cases, 376 European ancestry controls	287 European ancestry cases, 251 European ancestry controls	5q11.2	NR	rs72755734-G	NR	2E-7		2.72	[1.74-4.26]	Affymetrix, Illumina [8589102] (imputed)	N
1024	chr5	57550095	57550096	rs6892109	32119686	Dahlin A	2020-03-02	PLoS One	Genome-wide interaction study reveals age-dependent determinants of responsiveness to inhaled corticosteroids in individuals with asthma.	Adverse response to inhaled corticosteroid treatment x age interaction in asthma	407 European ancestry cases, 376 European ancestry controls	287 European ancestry cases, 251 European ancestry controls	5q11.2	NR	rs6892109-T	NR	1E-7		2.7	[1.73-4.22]	Affymetrix, Illumina [8589102] (imputed)	N
1024	chr5	57552463	57552464	rs12658947	32119686	Dahlin A	2020-03-02	PLoS One	Genome-wide interaction study reveals age-dependent determinants of responsiveness to inhaled corticosteroids in individuals with asthma.	Adverse response to inhaled corticosteroid treatment x age interaction in asthma	407 European ancestry cases, 376 European ancestry controls	287 European ancestry cases, 251 European ancestry controls	5q11.2	NR	rs12658947-G	NR	2E-7		2.69	[1.72-4.2]	Affymetrix, Illumina [8589102] (imputed)	N
1024	chr5	57552463	57552464	rs12658947	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	5q11.2		rs12658947-?	NR	5E-11				NR [~ 8900000] (imputed)	N
1024	chr5	57552714	57552715	rs12659412	32119686	Dahlin A	2020-03-02	PLoS One	Genome-wide interaction study reveals age-dependent determinants of responsiveness to inhaled corticosteroids in individuals with asthma.	Adverse response to inhaled corticosteroid treatment x age interaction in asthma	407 European ancestry cases, 376 European ancestry controls	287 European ancestry cases, 251 European ancestry controls	5q11.2	NR	rs12659412-C	NR	2E-7		2.69	[1.72-4.2]	Affymetrix, Illumina [8589102] (imputed)	N
1024	chr5	57566072	57566073	rs2434584	29551738	Dong J	2018-03-15	Clin Gastroenterol Hepatol	Interactions Between Genetic Variants and Environmental Factors Affect Risk of Esophageal Adenocarcinoma and Barrett's Esophagus.	Esophageal adenocarcinoma x smoking interaction	2,284 European ancestry cases, 2,182 European ancestry controls	NA	5q11.2	ACTBL2, PLK2	rs2434584-C	0.08	7E-7		2.52	[NR]	Illumina [993501]	N
1024	chr5	57566493	57566494	rs1562242	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	5q11.2	NR	rs1562242-T	0.4809	6E-9		0.012958634	NR unit decrease	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
1024	chr5	57567839	57567840	rs12186959	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	5q11.2	PGAM1P1	rs12186959-C	NR	4E-9		0.0182819	[0.012-0.024] unit increase	Affymetrix [319769] (imputed)	N
1024	chr5	57567839	57567840	rs12186959	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	5q11.2	PGAM1P1	rs12186959-C	NR	2E-9		0.0186559	[0.013-0.025] unit increase	Affymetrix [319769] (imputed)	N
1024	chr5	57576558	57576558	rs3080367	33830993	Johnston KJA	2021-04-08	PLoS Genet	Sex-stratified genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	209,093 British ancestry women	NA	5q11.2	PGAM1P1, PLK2	rs3080367-TACAC	NR	3E-8		0.024	[0.016-0.032] unit increase	NR [NR] (imputed)	N
1024	chr5	57587003	57587004	rs7380022	34518958	Sanders AR	2021-09-13	Arch Sex Behav	Genome-Wide Linkage and Association Study of Childhood Gender Nonconformity in Males.	Childhood gender nonconformity	409 European ancestry concordant male sibling pairs	NA	5q11.2		rs7380022-A	0.834	3E-6		0.074	[0.043-0.105] unit increase	Affymetrix [6030650] (imputed)	N
1024	chr5	57590470	57590471	rs37491	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	5q11.2	NR	rs37491-?	NR	4E-10				Affymetrix [NR]	N
1024	chr5	57600043	57600044	rs861347	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	5q11.2		rs861347-A	0.4646	6E-8		39.491398	z score increase	NR [6814003]	N
1024	chr5	57600516	57600517	rs2434582	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	5q11.2	PGAM1P1	rs2434582-?	NR	7E-11		0.013207105	[0.0092-0.0172] unit increase	NR [7306098]	N
1024	chr5	57607141	57607142	rs151912	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q11.2	NR	rs151912-T	0.574655	5E-11				Affymetrix, Illumina [23472807] (imputed)	N
1024	chr5	57610068	57610069	rs37538	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	5q11.2		rs37538-G	0.397224	3E-8		0.0221193	[0.014-0.03] unit increase	NR [11722792] (imputed)	N
1024	chr5	57610068	57610069	rs37538	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	5q11.2		rs37538-G	0.397212	1E-8		0.0228949	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
1024	chr5	57610068	57610069	rs37538	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	5q11.2		rs37538-G	0.397212	2E-8		0.0226595	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
1024	chr5	57610068	57610069	rs37538	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	5q11.2		rs37538-G	0.397212	4E-8		0.0218477	[0.014-0.03] unit increase	NR [11722792] (imputed)	N
1024	chr5	57610068	57610069	rs37538	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small VLDL	115,082 European ancestry individuals	NA	5q11.2		rs37538-G	0.397212	1E-9		0.024773	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
1024	chr5	57610068	57610069	rs37538	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small HDL	115,082 European ancestry individuals	NA	5q11.2		rs37538-G	0.397212	2E-8		0.0231587	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
1024	chr5	57610068	57610069	rs37538	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium VLDL	115,082 European ancestry individuals	NA	5q11.2		rs37538-G	0.397212	2E-8		0.0229624	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
1024	chr5	57610068	57610069	rs37538	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in VLDL	115,082 European ancestry individuals	NA	5q11.2		rs37538-G	0.397212	4E-8		0.0223383	[0.014-0.03] unit increase	NR [11722792] (imputed)	N
1024	chr5	57610068	57610069	rs37538	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	5q11.2		rs37538-G	0.397189	5E-9		0.0230679	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
1024	chr5	57610068	57610069	rs37538	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large VLDL	115,082 European ancestry individuals	NA	5q11.2		rs37538-G	0.397212	3E-8		0.0225648	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
1024	chr5	57610068	57610069	rs37538	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	5q11.2		rs37538-G	0.397212	2E-8		0.0229089	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
1024	chr5	57610068	57610069	rs37538	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	5q11.2		rs37538-C	NR	8E-12		0.0144	[0.01-0.019] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
1024	chr5	57610068	57610069	rs37538	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	5q11.2	PLK2	rs37538-G	0.39845	1E-12		0.0144558	[0.01-0.018] unit increase	Affymetrix [NR] (imputed)	N
1024	chr5	57628654	57628655	rs245279	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	5q11.2	NR	rs245279-A	0.1059	9E-7	(EA)	0.0493	[0.03-0.069] unit increase	Illumina [~ 11800000] (imputed)	N
1024	chr5	57640136	57640137	rs245295	33232274	Mohammadnejad A	2020-11-24	Aging (Albany NY)	Generalized correlation coefficient for genome-wide association analysis of cognitive ability in twins.	Cognitive function (generalized correlation coefficient)	900 Danish ancestry dizygotic twins, 272 Danish ancestry monozygotic twins	NA	5q11.2	NR	rs245295-?	NR	9E-7			[NR]	Illumina [5779266] (imputed)	N
1024	chr5	57649290	57649291	rs10042036	31598132	Donati G	2019-06-30	Mind Brain Educ	Genome-Wide Association Study of Latent Cognitive Measures in Adolescence: Genetic Overlap With Intelligence and Education.	Working memory	4,611 European ancestry adolescents	NA	5q11.2	PLK2	rs10042036-?	NR	5E-6		0.115	[0.056-0.174] unit decrease	Illumina [6319684] (imputed)	N
1024	chr5	57657756	57657757	rs13157057	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	5q11.2	NR	rs13157057-T	NR	2E-8		5.609	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1025	chr5	57742201	57742202	rs13166103	28060188	Hamet P	2017-01-16	J Hypertens	PROX1 gene CC genotype as a major determinant of early onset of type 2 diabetes in slavic study participants from Action in Diabetes and Vascular Disease: Preterax and Diamicron MR Controlled Evaluation study.	Type 2 diabetes (age of onset)	2,307 Celtic ancestry individuals, 1,102 Slavic ancestry individuals	NA	5q11.2	LOC101928569, PLK2	rs13166103-?	NR	4E-6	(Slavic)			Affymetrix [5045527] (imputed)	N
1025	chr5	57750349	57750350	rs15009	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	5q11.2		rs15009-G	NR	2E-10		0.0129	[0.009-0.0168] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
1025	chr5	57754004	57754005	rs1848510	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	5q11.2		rs1848510-A	NR	1E-9		0.0119	[0.0082-0.0156] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1025	chr5	57754004	57754005	rs1848510	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	5q11.2		rs1848510-A	NR	5E-8		0.0112	[0.0073-0.0151] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1025	chr5	57754004	57754005	rs1848510	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	5q11.2		rs1848510-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1025	chr5	57754004	57754005	rs1848510	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	NA	5q11.2	PLK2	rs1848510-G	0.6376999999999999	4E-12		0.1256	[0.09-0.161] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1025	chr5	57771086	57771087	rs6450476	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	5q11.2		rs6450476-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1025	chr5	57771086	57771087	rs6450476	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	5q11.2	Intergenic	rs6450476-A	0.2886	1E-8	(MTAG)	0.0103	[0.0068-0.0138] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1025	chr5	57771086	57771087	rs6450476	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	5q11.2		rs6450476-A	0.2929	5E-14		0.0116	[0.0087-0.0145] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1025	chr5	57771086	57771087	rs6450476	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	5q11.2	Intergenic	rs6450476-A	0.2929	2E-14	(MTAG)	0.011	[0.0083-0.0137] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1026	chr5	57905473	57905474	rs167132	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Perceived intensity of sweet substances	2,443 European ancestry twins	NA	5q11.2	RAB3C	rs167132-T	0.83	7E-6		0.18	[0.082-0.278] unit increase	Illumina [4001140] (imputed)	N
1026	chr5	57912762	57912763	rs73759508	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	5q11.2	NR	rs73759508-?	NR	2E-9				Illumina [7760689] (imputed)	N
1027	chr5	57962447	57962448	rs58800905	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	5q11.2	RAB3C	rs58800905-T	0.0142001358355454	7E-7	(G_Bifidobacterium_HB)	1.18175	[0.71-1.65] unit decrease	Illumina [7711310] (imputed)	N
1028	chr5	58082722	58082723	rs10065350	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	5q11.2	NR	rs10065350-C	0.841900657231865	9E-6	(IGP67)	0.2004	[0.11-0.29] unit decrease	Illumina [~ 2500000] (imputed)	N
1028	chr5	58083194	58083195	rs139293074	25625606	Mather KA	2015-01-27	PLoS One	Investigating the genetics of hippocampal volume in older adults without dementia.	Hippocampal volume	498 European ancestry older adult individuals	NA	5q11.2	RAB3C	rs139293074-A		5E-6		1064.6	[607.92-1521.28] unit increase	Affymetrix, Illumina [at least 646791] (imputed)	N
1028	chr5	58132701	58132702	rs2662390	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	5q11.2	NR	rs2662390-C	0.7419	1E-8		0.0276	[0.018-0.037] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1028	chr5	58184060	58184061	rs10472076	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	5q11.2		rs10472076-T	NR	2E-7		0.97	[0.96-0.98]	Affymetrix, Illumina [NR] (imputed)	N
1028	chr5	58184060	58184061	rs10472076	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	5q11.2	RAB3C	rs10472076-C	0.38	1E-8	(EA)	1.03	[1.01-1.04] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
1028	chr5	58184060	58184061	rs10472076	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	46,785 European ancestry cases, 42,892 European ancestry controls	NA	5q11.2	NR	rs10472076-C	0.38	2E-6		1.05	[1.03-1.07]	Affymetrix, Illumina [~ 14000000] (imputed)	N
1028	chr5	58184060	58184061	rs10472076	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	15,748 European ancestry cases, 18,084 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls	5q11.2	NR	rs10472076-C	0.38	2E-8		1.05	[1.03-1.07]	Affymetrix, Illumina [~ 11600000] (imputed)	N
1028	chr5	58184060	58184061	rs10472076	23535729	Michailidou K	2013-04-01	Nat Genet	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	5q11.2	RAB3C	rs10472076-C	0.38	3E-8		1.05	[1.03-1.07]	Affymetrix, Illumina [~ 2600000] (imputed)	N
1028	chr5	58184092	58184093	rs549961083	30846698	Dashti HS	2019-03-07	Nat Commun	Genome-wide association study identifies genetic loci for self-reported habitual sleep duration supported by accelerometer-derived estimates.	Sleep duration (long sleep)	34,184 European ancestry cases, 305,742 European ancestry controls	47,180  adults, 10,554 children or adolescents	5q11.2	RAB3C, PDE4D	rs549961083-T	NR	1E-8		1.705		Affymetrix [14661600] (imputed)	N
1029	chr5	58208217	58208218	rs159497	25979521	de Jong K	2015-06-05	J Allergy Clin Immunol	Genome-wide interaction study of gene-by-occupational exposure and effects on FEV1 levels.	Forced expiratory volume in 1 second (occupational environmental exposures interaction)	12,400 individuals	1,436 individuals	5q11.2	PDE4D	rs159497-C	0.46	5E-8	Gases and fumes	131.9	[NR] unit increase	Illumina [up to 221663]	N
1029	chr5	58231315	58231315	rs201997928	34130359	Curtis SW	2021-06-15	Genet Epidemiol	FAT4 identified as a potential modifier of orofacial cleft laterality.	Right unilateral cleft lip and palate	59 Asian ancestry cases, 94 European ancestry cases, 263 Hispanic cases, 1,626 controls	NA	5q11.2	NR	rs201997928-?		9E-6		1.79	[1.38-2.33]	Illumina [539473] (imputed)	N
1029	chr5	58304268	58304269	rs61511922	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	5q11.2	Intergenic	rs61511922-T	0.9328	2E-8	(MTAG)	0.0147	[0.0096-0.0198] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1029	chr5	58318962	58318963	rs13361043	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	5q11.2		rs13361043-T	0.9329	2E-8		0.0158	[0.01-0.021] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1030	chr5	58333159	58333160	rs1498604	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	5q11.2	PDE4D	rs1498604-A	0.768	4E-6		0.011	unit increase	Illumina [NR] (imputed)	N
1030	chr5	58333315	58333316	rs1498605	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	5q11.2	PDE4D	rs1498605-A	0.224	3E-6		0.011	unit decrease	Illumina [NR] (imputed)	N
1030	chr5	58333770	58333771	rs4699934	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	5q11.2	PDE4D	rs4699934-T	0.766	2E-6		0.011	unit increase	Illumina [NR] (imputed)	N
1030	chr5	58333807	58333808	rs4700319	28808816	Xu C	2017-08-14	Biogerontology	A genome-wide association study of cognitive function in Chinese adult twins.	Cognitive function	139 Chinese ancestry dizygotic twin pairs	NA		PDE4D	rs4700319-?		6E-6				Illumina [1048575]	N
1030	chr5	58333807	58333808	rs4700319	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA		PDE4D	rs4700319-T	0.228	2E-6		0.011	unit decrease	Illumina [NR] (imputed)	N
1030	chr5	58337480	58337481	rs1353747	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	5q11.2		rs1353747-T	NR	3E-9		1.06	[1.04-1.09]	Affymetrix, Illumina [NR] (imputed)	N
1030	chr5	58337480	58337481	rs1353747	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	5q11.2	PDE4D	rs1353747-T	0.91	4E-9	(EA)	1.0416667	[1.01-1.08] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
1030	chr5	58337480	58337481	rs1353747	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	46,785 European ancestry cases, 42,892 European ancestry controls	NA	5q11.2	NR	rs1353747-T	0.9	1E-6		1.0869565	[1.05-1.12]	Affymetrix, Illumina [~ 14000000] (imputed)	N
1030	chr5	58337480	58337481	rs1353747	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	15,748 European ancestry cases, 18,084 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls	5q11.2	NR	rs1353747-T	0.9	3E-8		1.0869565	[1.05-1.12]	Affymetrix, Illumina [~ 11600000] (imputed)	N
1030	chr5	58337480	58337481	rs1353747	23535729	Michailidou K	2013-04-01	Nat Genet	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	5q11.2	PDE4D	rs1353747-T	0.905	3E-8		1.09	[1.05-1.12]	Affymetrix, Illumina [~ 2600000] (imputed)	N
1030	chr5	58355276	58355277	rs10043357	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	5q11.2		rs10043357-A	NR	1E-9		0.0147	[0.01-0.0194] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
1030	chr5	58373417	58373418	rs77994712	32769997	Zhou W	2020-08-07	Nat Commun	GWAS of thyroid stimulating hormone highlights pleiotropic effects and inverse association with thyroid cancer.	Thyroid stimulating hormone levels	119,715 European ancestry individuals	NA	5q11.2	PDE4D	rs77994712-G	0.0519434811739929	1E-9		0.0657	[0.044-0.087] SD decrease	Illumina [22400000] (imputed)	N
1030	chr5	58407770	58407771	rs10052657	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	5q11.2	NR	rs10052657-?	NR	5E-7				Affymetrix [NR]	N
1030	chr5	58407770	58407771	rs10052657	25129146	Wu C	2014-08-17	Nat Genet	Joint analysis of three genome-wide association studies of esophageal squamous cell carcinoma in Chinese populations.	Esophageal squamous cell carcinoma	5,337 Han Chinese ancestry cases, 5,787 Han Chinese ancestry controls	9,654 Han Chinese ancestry cases, 10,058 Han Chinese ancestry  controls	5q11.2	PDE4D, PDE4DN2	rs10052657-C	0.88	1E-6		1.25	[1.15-1.37]	Affymetrix, Illumina [7556215] (imputed)	N
1030	chr5	58407770	58407771	rs10052657	21642993	Wu C	2011-06-05	Nat Genet	Genome-wide association study identifies three new susceptibility loci for esophageal squamous-cell carcinoma in Chinese populations.	Esophageal cancer	2,031 Han Chinese ancestry cases, 2,044 Han Chinese ancestry controls	3,986 Han Chinese ancestry cases, 4,157 Han Chinese ancestry controls	5q11.2	PDE4D	rs10052657-C	0.78	2E-19		1.49	[1.37-1.61]	Affymetrix [666141]	N
1030	chr5	58432923	58432924	rs116463691	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure in major depressive disorder-negative individuals	10,701 European ancestry cases, 39,677 European ancestry controls	NA	5q11.2	NR	rs116463691-T	0.9758602	7E-6		1.1286682	[1.07-1.18]	Affymetrix [7791636] (imputed)	N
1030	chr5	58436135	58436136	rs28385324	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	5q11.2		rs28385324-G	NR	2E-14		0.0102	[0.0077-0.0127] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1031	chr5	58471461	58471462	rs10940642	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5q11.2		rs10940642-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1031	chr5	58476116	58476117	rs9292195	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	5q11.2	NR	rs9292195-C	0.8454	4E-7	(EA)	0.0434	[0.027-0.06] unit decrease	Illumina [~ 11800000] (imputed)	N
1031	chr5	58477397	58477398	rs191686630	30134803	Matana A	2018-04-11	Mol Med	Genome-wide meta-analysis identifies novel loci associated with parathyroid hormone level.	Plasma parathyroid hormone levels	806 Korculan (founder/genetic isolate) individuals, 831 Vis (founder/genetic isolate) individuals, 959 Croatian ancestry individuals	NA	5q11.2	PDE4D	rs191686630-A	0.21	2E-6		0.19	[0.11-0.27] unit increase	Illumina [7411206] (imputed)	N
1031	chr5	58550538	58550539	rs6450514	30456828	Khramtsova EA	2018-11-20	Am J Med Genet B Neuropsychiatr Genet	Sex differences in the genetic architecture of obsessive-compulsive disorder.	Obsessive-compulsive disorder	1,249 European ancestry male cases, 2,789 European ancestry male controls, 1,525 European ancestry female cases, 4,307 European ancestry female controls	NA	5q11.2	PDE4D	rs6450514-?		4E-6	(male)	0.244	[0.14-0.35] unit decrease	NR [~ 5500000] (imputed)	N
1031	chr5	58550822	58550823	rs27949	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-13 levels	3,557 Finnish ancestry individuals	NA	5q11.2	NR	rs27949-C		3E-6		0.1168	[0.067-0.166] SD units increase	NR [10700000] (imputed)	N
1031	chr5	58560716	58560717	rs17444059	22610502	Kennedy RB	2012-05-19	Hum Genet	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune response to smallpox vaccine (IL-6)	Up to 512 European ancestry individuals, 199 African American individuals	NA	5q11.2	PDE4D	rs17444059-G		2E-8	(AA)			Illumina [NR]	N
1032	chr5	58589785	58589786	rs17780175	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5q11.2	RAB3C	rs17780175-?	NR	7E-6	(SM 14:0)	0.16245477	[0.092-0.233] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1032	chr5	58591230	58591231	rs76488554	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin I concentration	1,606 African American individuals	NA	5q11.2		rs76488554-?	NR	1E-5		0.22	[0.12-0.32] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1032	chr5	58595605	58595606	rs7703022	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5q11.2		rs7703022-?	NR	3E-15				NR [~ 8900000] (imputed)	N
1032	chr5	58676048	58676049	rs1823068	17903308	Gottlieb DJ	2007-09-19	BMC Med Genet	Genome-wide association of sleep and circadian phenotypes.	Sleep-related phenotypes	up to 738 individuals from 203 families	NA	5q11.2	PDE4D	rs1823068-?	NR	3E-8	(Sleepiness)			Affymetrix [70897]	N
1032	chr5	58703057	58703058	rs190258567	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	5q11.2	NR	rs190258567-?	NR	9E-6		0.8936	[0.46-1.32] unit decrease	Illumina [at least 560000] (imputed)	N
1032	chr5	58713679	58713680	rs2547917	23648065	Low SK	2013-05-04	Cancer Sci	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (gemcitabine)	80 Japanese ancestry cases, 226 Japanese ancestry controls	NA	5q11.2	PDE4D	rs2547917-A	0.212	3E-6	(Recessive model)	1.997	[1.345-2.965]	Illumina [733202]	N
1033	chr5	58760287	58760288	rs149799089	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	5q11.2	NR	rs149799089-T	NR	1E-6	(GEE model)	0.91021	[0.55-1.28] unit decrease	NR [NR] (imputed)	N
1033	chr5	58798098	58798099	rs35987304	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Amygdala volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	5q11.2	PDE4D	rs35987304-?		6E-7				Illumina [4322238] (imputed)	N
1033	chr5	58827405	58827406	rs59152766	34162658	Quinn MC	2021-06-23	Cancer Epidemiol Biomarkers Prev	Identification of a locus near ULK1 associated with progression-free survival in ovarian cancer.	Progression free survival in serous epithelial ovarian cancer treated with carboplatin and paclitaxel	1,751 European ancestry individuals	NA	5q11.2	NR	rs59152766-T		9E-6		2.4084	[1.35-3.47] unit increase	Illumina [12759548] (imputed)	N
1033	chr5	58827405	58827406	rs59152766	34162658	Quinn MC	2021-06-23	Cancer Epidemiol Biomarkers Prev	Identification of a locus near ULK1 associated with progression-free survival in ovarian cancer.	Progression free survival in epithelial ovarian cancer treated with carboplatin and paclitaxel	2,352 European ancestry individuals	NA	5q11.2	NR	rs59152766-T		6E-6		2.4042	[1.36-3.44] unit increase	Illumina [12764477] (imputed)	N
1033	chr5	58830144	58830145	rs37576	30326835	Li Z	2018-10-16	BMC Genomics	Genetic variants in nuclear DNA along with environmental factors modify mitochondrial DNA copy number: a population-based exome-wide association study.	Mitochondrial DNA levels	301 Chinese ancestry individuals	NA	5q11.2	PDE4D	rs37576-A	NR	2E-6	(adjusted for fine particulate matter exposure and smoking behaviour)	0.478	unit decrease	Illumina [238927]	N
1033	chr5	58842773	58842774	rs702543	17667963	Shifman S	2007-07-31	Mol Psychiatry	A whole genome association study of neuroticism using DNA pooling.	Neuroticism	1,038 European ancestry cases, 1,016 European ancestry controls	831 European ancestry cases, 702 European ancestry controls	5q11.2	PDE4D	rs702543-A	0.55	2E-6		1.27	[1.15-1.40]	Affymetrix [452574]	N
1034	chr5	58861036	58861037	rs6858964	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	5q11.2	NR	rs6858964-C	0.292078	1E-8		0.0193629	[0.013-0.026] unit decrease	NR [19129689] (imputed)	N
1034	chr5	58885578	58885579	rs36081664	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	5q11.2	NR	rs36081664-?	NR	1E-15				Affymetrix [NR]	N
1034	chr5	58978211	58978212	rs298069	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	5q12.1		rs298069-C	0.81183	2E-6		0.041422	[0.024-0.058] unit increase	Affymetrix [15580782] (imputed)	N
1034	chr5	58979945	58979946	rs17382202	23241943	Clark SL	2012-12-12	Pharmacogenet Genomics	Genome-wide association study of patient-rated and clinician-rated global impression of severity during antipsychotic treatment.	Response to antipsychotic treatment	Up to 421 European ancestry Schizophrenia cases, up to 214 African American individuals, up to 103 individuals	NA	5q12.1	PDE4D	rs17382202-T	0.153	4E-8	(Effect of Quetiapine on PGI)			Affymetrix [492900]	N
1035	chr5	58994525	58994526	rs298088	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	5q12.1		rs298088-?	NR	6E-9				NR [~ 8900000] (imputed)	N
1035	chr5	58995826	58995827	rs298089	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	5q12.1	NR	rs298089-G	NR	1E-40		0.036	[0.031-0.041] unit increase	Affymetrix [9000000] (imputed)	N
1035	chr5	59019358	59019359	rs11739906	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Sunburns	approximately 344,000 European ancestry individuals	NA	5q12.1		rs11739906-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1035	chr5	59024485	59024486	rs6877662	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	5q12.1		rs6877662-?	NR	3E-12				NR [~ 8900000] (imputed)	N
1035	chr5	59036577	59036578	rs7736817	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	5q12.1	Intergenic	rs7736817-A	0.4803	2E-9	(MTAG)	0.0099	[0.0066-0.0132] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1035	chr5	59039857	59039858	rs981230	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	5q12.1		rs981230-T	0.4793	1E-12		0.01	[0.0073-0.0127] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1035	chr5	59039857	59039858	rs981230	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	5q12.1	Intergenic	rs981230-T	0.4793	2E-12	(MTAG)	0.0092	[0.0067-0.0117] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1035	chr5	59045192	59045193	rs1960603	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	5q12.1		rs1960603-C	0.2492	1E-9	(conditional-joint)	0.0099	[0.0068-0.013] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1035	chr5	59087285	59087286	rs62370541	33692100	Simcoe M	2021-03-10	Sci Adv	Genome-wide association study in almost 195,000 individuals identifies 50 previously unidentified genetic loci for eye color.	Eye color	157,485 European ancestry individuals	35,501 European ancestry individuals, 959 Han Chinese ancestry individuals, 677 Indian ancestry individuals	5q12.1		rs62370541-A	0.968	6E-9	(EA)	5.822	NR z score decrease	Illumina [11532091] (imputed)	N
1035	chr5	59094754	59094755	rs11747378	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	5q12.1		rs11747378-T	0.1842	3E-6		0.041215	[0.024-0.058] unit decrease	Affymetrix [15580782] (imputed)	N
1035	chr5	59096922	59096923	rs2963826	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	5q12.1	PDE4D	rs2963826-A	0.325	2E-6	(IGF1 bound )	0.03	[NR] ng/mL increase	Illumina [899892]	N
1036	chr5	59152139	59152140	rs79798166	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	5q12.1		rs79798166-A	0.0884	4E-12		0.0172	[0.012-0.022] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1036	chr5	59152139	59152140	rs79798166	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	5q12.1	Intergenic	rs79798166-A	0.0884	9E-12	(MTAG)	0.0157	[0.011-0.02] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1037	chr5	59250505	59250506	rs4700347	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5q12.1	DEPDC1B	rs4700347-?	NR	3E-9	(SM 24:1)	0.27743632	[0.19-0.37] unit increase	Affymetrix [at least 2500000] (imputed)	N
1037	chr5	59369793	59369794	rs1588265	19426955	Himes BE	2009-05-07	Am J Hum Genet	Genome-wide association analysis identifies PDE4D as an asthma-susceptibility gene.	Asthma	359 European ancestry cases, 846 European ancestry controls	2,981 European ancestry cases, 12,358 European ancestry controls, 769 European ancestry and hispanic cases, 1,007 European ancestry and hispanic controls, 592 Hispanic cases with their 1,184 Hispanic parental controls, 2,258 African American cases, 3,006 African American controls	5q12.1	PDE4D	rs1588265-C	0.29	3E-8		1.18	[1.08-1.30]	Illumina [518230]	N
1038	chr5	59391635	59391636	rs12516070	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	5q12.1	PDE4D	rs12516070-T	0.483786	1E-10		0.0124977	[0.0087-0.0163] unit decrease	Affymetrix [NR] (imputed)	N
1038	chr5	59399244	59399245	rs114514212	32080354	Rasmussen ER	2020-02-21	Pharmacogenomics J	Genome-wide association study of angioedema induced by angiotensin-converting enzyme inhibitor and angiotensin receptor blocker treatment.	Angioedema in response to angiotensin-converting enzyme inhibitor and/or angiotensin receptor blocker	172 European ancestry cases, 1 case, 4,890 European ancestry controls	NA	5q12.1	NR	rs114514212-A	0.035	1E-6		2.634	[1.776-3.908]	Illumina [7585599] (imputed)	N
1038	chr5	59437873	59437874	rs2961900	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5q12.1	DEPDC1B	rs2961900-?	NR	1E-8	(SM 24:1)	0.2527194	[0.17-0.34] unit increase	Affymetrix [at least 2500000] (imputed)	N
1038	chr5	59498174	59498175	rs2910823	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	5q12.1		rs2910823-T	0.5359	3E-16		0.0115	[0.0088-0.0142] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1038	chr5	59502519	59502520	rs966221	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	5q12.1		rs966221-?	NR	9E-11				NR [~ 8900000] (imputed)	N
1038	chr5	59502519	59502520	rs966221	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	5q12.1		rs966221-A	0.4085	2E-16	(conditional-joint)	0.0118	[0.0091-0.0145] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1038	chr5	59502519	59502520	rs966221	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	5q12.1	Intergenic	rs966221-A	0.4085	9E-16	(MTAG)	0.0107	[0.0082-0.0132] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1039	chr5	59544652	59544653	rs4235479	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	5q12.1		rs4235479-C	0.5108809999999999	9E-37		1.0550625	[1.04-1.06]	Affymetrix, Illumina [9851866] (imputed)	N
1039	chr5	59570257	59570258	rs4283754	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	5q12.1		rs4283754-A	0.4787	8E-9		0.0084	[0.0057-0.0111] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1039	chr5	59597486	59597487	rs34426618	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	5q12.1	NR	rs34426618-T	NR	2E-8		5.599	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1039	chr5	59603210	59603211	rs7735958	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	5q12.1	Intergenic	rs7735958-A	0.8262	4E-12	(MTAG)	0.021	[0.015-0.027] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1039	chr5	59603879	59603880	rs36004779	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	5q12.1	PDE4D	rs36004779-A	NR	5E-8		5.454	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1039	chr5	59608949	59608950	rs13154429	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	5q12.1		rs13154429-C	0.1016	5E-9		0.0136	[0.0091-0.0181] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1039	chr5	59634543	59634544	rs4699954	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	5q12.1	PDE4D	rs4699954-A	NR	2E-8		0.02112283	[0.014-0.029] unit decrease	Affymetrix [NR]	N
1039	chr5	59636726	59636727	rs6860626	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	5q12.1	NR	rs6860626-C	0.145129	1E-8		0.050604597	[0.033-0.068] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1039	chr5	59636726	59636727	rs6860626	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	5q12.1	Intergenic	rs6860626-T	0.1735	1E-8		0.0215	[0.014-0.029] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
1040	chr5	59647991	59647992	rs35335033	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	5q12.1	Intergenic	rs35335033-T	0.8345	4E-11	(MTAG)	0.0147	[0.01-0.019] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1040	chr5	59648715	59648716	rs7737905	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	5q12.1	Intergenic	rs7737905-T	0.2871	2E-16	(MTAG)	0.0119	[0.0092-0.0146] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1041	chr5	59775135	59775136	rs27220	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	5q12.1		rs27220-A	0.3562	8E-15		0.0114	[0.0085-0.0143] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1041	chr5	59781701	59781702	rs11746901	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	5q12.1	Intergenic	rs11746901-C	0.8408	2E-8	(MTAG)	0.0104	[0.0069-0.0139] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1041	chr5	59811991	59811992	rs77632498	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mumps	31,227 European ancestry cases, 54,153 European ancestry controls	NA	5q12.1	NR	rs77632498-?	NR	8E-6		0.8305	[0.45-1.21] unit decrease	Illumina [at least 560000] (imputed)	N
1041	chr5	59819940	59819941	rs7728865	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28- CD8+ T cell %CD8+ T cell	3,440 Sardinian (founder/genetic isolate) ancestry individuals	NA	5q12.1		rs7728865-A	0.10195	1E-8		0.2169	[0.14-0.29] unit decrease	Illumina [18357815] (imputed)	N
1041	chr5	59825299	59825300	rs26949	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	5q12.1	PART1	rs26949-C	0.4233	1E-10		0.013190416	[0.0092-0.0172] unit increase	Affymetrix [up to 18485882] (imputed)	N
1041	chr5	59825299	59825300	rs26949	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	5q12.1	PART1	rs26949-T	NR	6E-9		0.017185792	[0.011-0.023] unit decrease	Affymetrix [NR]	N
1041	chr5	59837590	59837591	rs27565	33594131	Donati G	2021-02-16	Sci Rep	Evidence for specificity of polygenic contributions to attainment in English, maths and science during adolescence.	Academic attainment (science)	6,089 European ancestry adolescents	NA	5q12.1	NR	rs27565-T	NR	7E-6		0.084	[0.047-0.121] unit increase	Illumina [6319684] (imputed)	N
1041	chr5	59837590	59837591	rs27565	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	5q12.1	PART1	rs27565-T	0.4707	3E-12		0.014092638	[0.01-0.018] unit increase	Affymetrix [up to 18485882] (imputed)	N
1041	chr5	59844078	59844079	rs248912	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	5q12.1	NR	rs248912-C	0.408549	2E-8		0.04015048	[0.026-0.054] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1041	chr5	59844982	59844983	rs72755130	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	5q12.1	Intergenic	rs72755130-A	0.8987	2E-8	(MTAG)	0.0156	[0.01-0.021] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1041	chr5	59852635	59852636	rs633628	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	5q12.1	NR	rs633628-?	NR	7E-6		4.505	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1042	chr5	59981084	59981085	rs11955398	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	5q12.1	DEPDC1B	rs11955398-A	NR	3E-10		0.018639376	[0.013-0.024] unit increase	Affymetrix [NR]	N
1042	chr5	60030790	60030791	rs7381195	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	5q12.1	ELOVL7	rs7381195-T	0.388609	2E-10		0.0136119	[0.0095-0.0178] unit increase	NR [16516521] (imputed)	N
1043	chr5	60032277	60032278	rs186947746	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	5q12.1	Intergenic	rs186947746-A	1.0	8E-7	(AA)	0.498	unit increase	Illumina [NR] (imputed)	N
1043	chr5	60042496	60042497	rs185898158	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	5q12.1	Intergenic	rs185898158-A	1.0	8E-7	(AA)	0.5	unit increase	Illumina [NR] (imputed)	N
1043	chr5	60053219	60053220	rs7715147	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	5q12.1	ELOVL7	rs7715147-A	0.2436	2E-11		0.016043188	[0.011-0.021] unit increase	Affymetrix [up to 18485882] (imputed)	N
1043	chr5	60053219	60053220	rs7715147	27629089	Sailer A	2016-09-14	Neurology	A genome-wide association study in multiple system atrophy.	Multiple system atrophy	918 European ancestry cases, 3,864 European ancestry controls	NA	5q12.1	ELOVL7	rs7715147-C	0.74	3E-7		1.47		Illumina [4903804] (imputed)	N
1043	chr5	60063693	60063694	rs200699082	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean platelet volume	445,364 European ancestry individuals	NA	5q12.1		rs200699082-?	NR	6E-11		0.238702	[0.16-0.32] unit increase	NR [9800000] (imputed)	N
1043	chr5	60063693	60063694	rs200699082	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	5q12.1	ELOVL7	rs200699082-A	4.97999999999998E-4	9E-11		0.32516685	[0.23-0.42] unit increase	Affymetrix [93095623] (imputed)	N
1043	chr5	60069056	60069057	rs13158665	33594131	Donati G	2021-02-16	Sci Rep	Evidence for specificity of polygenic contributions to attainment in English, maths and science during adolescence.	Academic attainment (science)	6,089 European ancestry adolescents	NA	5q12.1	NR	rs13158665-T	NR	4E-6		0.085	[0.05-0.12] unit decrease	Illumina [6319684] (imputed)	N
1043	chr5	60069056	60069057	rs13158665	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income	286,301 British ancestry individuals	NA	5q12.1	ELOVL7	rs13158665-T	NR	4E-9		0.011882	[0.0079-0.0158] unit decrease	Affymetrix [18485882] (imputed)	N
1043	chr5	60069933	60069934	rs1444240	33594131	Donati G	2021-02-16	Sci Rep	Evidence for specificity of polygenic contributions to attainment in English, maths and science during adolescence.	Academic attainment (science)	6,089 European ancestry adolescents	NA	5q12.1	NR	rs1444240-G	NR	2E-6		0.089	[0.052-0.126] unit decrease	Illumina [6319684] (imputed)	N
1043	chr5	60079230	60079231	rs60258111	31598132	Donati G	2019-06-30	Mind Brain Educ	Genome-Wide Association Study of Latent Cognitive Measures in Adolescence: Genetic Overlap With Intelligence and Education.	Working memory	4,611 European ancestry adolescents	NA	5q12.1	ELOVL7	rs60258111-?	NR	3E-6		0.36	[0.2-0.52] unit increase	Illumina [6319684] (imputed)	N
1043	chr5	60093094	60093095	rs6449502	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	5q12.1	ELOVL7	rs6449502-C	0.8197	6E-27		0.05053858	[0.041-0.06] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1043	chr5	60093611	60093612	rs4235482	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	5q12.1	NR	rs4235482-?	NR	5E-11	(left pericalcarine)			NR [9227495] (imputed)	N
1043	chr5	60095003	60095004	rs57468227	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income	286,301 British ancestry individuals	NA	5q12.1	ELOVL7	rs57468227-C	NR	3E-9		0.01201	[0.0081-0.016] unit increase	Affymetrix [18485882] (imputed)	N
1043	chr5	60095271	60095272	rs6449503	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	5q12.1	NR	rs6449503-G	0.482107	1E-12		0.049974374	[0.036-0.064] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1043	chr5	60095271	60095272	rs6449503	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	5q12.1	ELOVL7	rs6449503-A	0.4931	2E-20		0.018666249	[0.015-0.023] unit increase	Affymetrix [up to 18485882] (imputed)	N
1043	chr5	60095271	60095272	rs6449503	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	5q12.1		rs6449503-A	0.5038	2E-39		0.0185	[0.016-0.021] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1043	chr5	60095271	60095272	rs6449503	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	5q12.1	Intergenic	rs6449503-A	0.5038	1E-42	(MTAG)	0.0179	[0.015-0.02] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1043	chr5	60095383	60095384	rs79855925	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	5q12.1		rs79855925-T	0.0488	3E-9		0.0194	[0.013-0.026] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1043	chr5	60098266	60098267	rs4700393	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	5q12.1		rs4700393-?	NR	5E-31				NR [~ 8900000] (imputed)	N
1043	chr5	60098266	60098267	rs4700393	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	5q12.1	Intergenic	rs4700393-A	0.4675	4E-33	(MTAG)	0.0198	[0.016-0.023] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1043	chr5	60098266	60098267	rs4700393	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	5q12.1	Intergenic	rs4700393-A	0.4779	2E-17	(MTAG)	0.0195	[0.015-0.024] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1043	chr5	60098266	60098267	rs4700393	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	5q12.1	ELOVL7	rs4700393-A	NR	2E-11		0.020599905	[0.015-0.027] unit decrease	Affymetrix [NR]	N
1043	chr5	60111578	60111579	rs61160187	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	5q12.1		rs61160187-A	0.6194	2E-12		60.89872	z score increase	NR [6814003]	N
1043	chr5	60111578	60111579	rs61160187	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	5q12.1	NR	rs61160187-A	0.6071	3E-14		0.01734467	NR unit decrease	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
1043	chr5	60111578	60111579	rs61160187	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (college completion)	280,007 European ancestry individuals	NA	5q12.1	NR	rs61160187-?	0.3928	6E-11		1.0400627	[NR]	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
1043	chr5	60113648	60113649	rs11747856	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	5q12.1	NR	rs11747856-G	0.205066	9E-83		0.045714	[0.041-0.05] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1043	chr5	60117201	60117202	rs4700394	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	5q12.1	NR	rs4700394-?	NR	1E-6		4.85	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1043	chr5	60117722	60117723	rs6893642	32963231	Hofer E	2020-09-22	Nat Commun	Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.	Cortical surface area	18,617 European and African American ancestry individuals	22,363 European ancestry individuals	5q12.1	ELOVL7	rs6893642-?		6E-20	(Pericalcarine)			Affymetrix, Illumina [NR] (imputed)	N
1043	chr5	60121270	60121271	rs71592686	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	5q12.1	NR	rs71592686-C	0.274	4E-13		0.020737449	[0.015-0.026] unit increase	NR [~ 10000000] (imputed)	N
1043	chr5	60121469	60121470	rs62372074	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking initiation (ever regular vs never regular)	up to 433,216 European ancestry individuals	NA	5q12.1	ELOVL7	rs62372074-T	0.148	4E-9		0.019	[0.013-0.025] unit increase	Illumina [~ 250000] (imputed)	N
1043	chr5	60126265	60126266	rs4410607	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q12.1	NR	rs4410607-T	0.185735	4E-83				Affymetrix, Illumina [17210439] (imputed)	N
1043	chr5	60129360	60129361	rs6869332	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	5q12.1	ELOVL7	rs6869332-G	0.816391	3E-59		0.04702949	[0.041-0.053] unit decrease	Affymetrix [93095623] (imputed)	N
1043	chr5	60137858	60137859	rs13189346	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	5q12.1		rs13189346-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1043	chr5	60137958	60137959	rs1867598	32201043	Smeland OB	2020-02-08	Biol Psychiatry	Genome-wide Association Analysis of Parkinson's Disease and Schizophrenia Reveals Shared Genetic Architecture and Identifies Novel Risk Loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	NA	5q12.1	ELOVL7	rs1867598-A		7E-10		0.1444	[0.099-0.19] unit decrease	Illumina [NR]	N
1043	chr5	60137958	60137959	rs1867598	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	5q12.1	ELOVL7	rs1867598-A	0.9019	3E-23		0.1554	[0.12-0.19] unit decrease	NR [7784415] (imputed)	N
1044	chr5	60164775	60164776	rs12652878	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	5q12.1	NR	rs12652878-T	0.4272	1E-17				NR [9056863] (imputed)	N
1044	chr5	60167887	60167888	rs4699965	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	5q12.1	NR	rs4699965-C	0.37	2E-8		0.00853553	[0.0055-0.0115] unit increase	NR [9732723] (imputed)	N
1044	chr5	60173514	60173515	rs185572712	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	5q12.1	NR	rs185572712-G	NR	1E-6		1.1764705	[NR]	Illumina [7158791] (imputed)	N
1044	chr5	60178832	60178833	rs1820083	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	5q12.1	NR	rs1820083-C	0.399	4E-17		0.00931004	[0.0071-0.0115] unit increase	NR [9732723] (imputed)	N
1044	chr5	60204408	60204408	rs142838100	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	5q12.1	NR	rs142838100-?		3E-15		0.0174187	[0.013-0.022] unit increase	Affymetrix [19400418] (imputed)	N
1044	chr5	60204408	60204408	rs142838100	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (computer use)	408,815 European ancestry individuals	NA	5q12.1	NR	rs142838100-?		5E-6		0.0102987	[0.0059-0.0147] unit decrease	Affymetrix [19400418] (imputed)	N
1044	chr5	60234241	60234242	rs6449512	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	5q12.1		rs6449512-A	0.5802	7E-12		58.25171	z score increase	NR [6814003]	N
1044	chr5	60243283	60243284	rs72757182	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	5q12.1	Intergenic	rs72757182-A	0.0335	2E-9	(MTAG)	0.0276	[0.019-0.037] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1044	chr5	60243283	60243284	rs72757182	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	5q12.1	Intergenic	rs72757182-A	0.0313	7E-9	(MTAG)	0.0226	[0.015-0.03] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1044	chr5	60260542	60260543	rs162227	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Parkinson's disease	9,619 European ancestry cases, 324,522 European ancestry controls	NA	5q12.1	NDUFAF2	rs162227-?	NR	1E-8		1.1627907	[1.10-1.22]	Illumina [12438219] (imputed)	N
1044	chr5	60273922	60273923	rs2694528	28892059	Chang D	2017-09-11	Nat Genet	A meta-analysis of genome-wide association studies identifies 17 new Parkinson's disease risk loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	5,851 European ancestry cases, 5,866 European ancestry controls	5q12.1	ELOVL7	rs2694528-C	0.115	5E-15		1.15	[1.11-1.20]	Illumina [11933700] (imputed)	N
1044	chr5	60287001	60287002	rs329621	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	5q12.1		rs329621-A	0.303	8E-15		0.01	[0.008-0.012] unit increase	NR [NR] (imputed)	N
1045	chr5	60315822	60315823	rs10939879	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	5q12.1	NR	rs10939879-C	0.4359	1E-17				NR [9056863] (imputed)	N
1045	chr5	60315822	60315823	rs10939879	32963231	Hofer E	2020-09-22	Nat Commun	Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.	Cortical volume	22,824 European and African American ancestry individuals	NA	5q12.1	NDUFAF2	rs10939879-?		3E-10	(Pericalcarine)			Affymetrix, Illumina [NR] (imputed)	N
1045	chr5	60315822	60315823	rs10939879	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	5q12.1	PDE4D, DEPDC1B, ELOVL7, ERCC8, NDUFAF2, AC008498.1, SMIM15, ZSWIM6	rs10939879-?		5E-41				NR [7428630] (imputed)	N
1045	chr5	60318972	60318973	rs62367903	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	5q12.1	NR	rs62367903-A	0.5694	4E-22	(Pericalcarine)	10.050693	[8.02-12.09] unit increase	Affymetrix, Illumina [NR]	N
1045	chr5	60332815	60332816	rs726824	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	5q12.1	VRK2, FANCL	rs726824-?		2E-36				NR [7428630] (imputed)	N
1045	chr5	60332815	60332816	rs726824	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	5q12.1	NDUFAF2	rs726824-G	0.4355	4E-20		0.018728582	[0.015-0.023] unit increase	Affymetrix [up to 18485882] (imputed)	N
1045	chr5	60338843	60338844	rs72759206	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	5q12.1		rs72759206-G	0.42	6E-48		14.55	z score increase	Affymetrix [9061022] (imputed)	N
1045	chr5	60345750	60345751	rs34642	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	5q12.1	Intergenic	rs34642-C	0.2762	3E-10		0.0159	[0.011-0.021] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1045	chr5	60349002	60349003	rs78709717	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q12.1	NR	rs78709717-G	0.0122	2E-10	(RNASE2)	0.04213	NR unit increase	Illumina [1671387] (imputed)	N
1045	chr5	60352582	60352583	rs72759215	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	5q12.1		rs72759215-T	0.42	5E-115		22.8	z score increase	Affymetrix [9061022] (imputed)	N
1045	chr5	60352582	60352583	rs72759215	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	5q12.1		rs72759215-T	0.42	5E-60		16.34	z score increase	Affymetrix [9061022] (imputed)	N
1045	chr5	60352582	60352583	rs72759215	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	5q12.1	NDUFAF2	rs72759215-T	NR	2E-12		0.021698983	[0.016-0.028] unit increase	Affymetrix [NR]	N
1045	chr5	60354521	60354522	rs248686	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	5q12.1	NDUFAF2	rs248686-T	0.2554	2E-11		0.015660727	[0.011-0.02] unit increase	Affymetrix [up to 18485882] (imputed)	N
1045	chr5	60354521	60354522	rs248686	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income	286,301 British ancestry individuals	NA	5q12.1	NDUFAF2	rs248686-T	NR	2E-8		0.011341	[0.0074-0.0153] unit increase	Affymetrix [18485882] (imputed)	N
1045	chr5	60359709	60359710	rs1526896	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	5q12.1	NDUFAF2	rs1526896-?	NR	2E-15		0.016284786	[0.012-0.02] unit decrease	NR [7306098]	N
1045	chr5	60360217	60360218	rs248682	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	5q12.1	NDUFAF2	rs248682-A	0.3892	1E-9		0.0126695	[0.0086-0.0167] unit increase	Affymetrix [up to 18485882] (imputed)	N
1045	chr5	60374911	60374912	rs6893752	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	5q12.1		rs6893752-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1045	chr5	60382972	60382973	rs10939881	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	5q12.1		rs10939881-A	0.431	6E-12		58.5755	z score increase	NR [6814003]	N
1045	chr5	60382972	60382973	rs10939881	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical thickness (MOSTest)	26,502 European ancestry individuals	NA	5q12.1	KCNN3, DCST2, DCST1, ADAM15, EFNA4, EFNA3, EFNA1, SLC50A1, DPM3, KRTCAP2, RP11-201K10.3, TRIM46, MUC1, THBS3, MTX1, GBA, FAM189B, SCAMP3, CLK2, HCN3, PKLR, FDPS, RUSC1, ASH1L, MSTO1, YY1AP1, DAP3, GON4L, SYT11, RIT1, KIAA0907, RXFP4, ARHGEF2, LMNA	rs10939881-?		8E-17				NR [7428630] (imputed)	N
1045	chr5	60384170	60384171	rs13187930	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	5q12.1	SMIM15	rs13187930-T	0.2597	6E-10		0.014171004	[0.0097-0.0187] unit increase	Affymetrix [11514654] (imputed)	N
1045	chr5	60386652	60386653	rs12518792	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	5q12.1	NR	rs12518792-?	NR	2E-7		5.163	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1045	chr5	60388312	60388313	rs2080870	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	5q12.1		rs2080870-A	0.258	5E-8		0.012	[0.0081-0.0159] unit increase	Affymetrix [up to 90000000] (imputed)	N
1045	chr5	60388312	60388313	rs2080870	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	5q12.1	NR	rs2080870-T	0.747	6E-9		0.00881017	[0.0058-0.0118] unit decrease	NR [~ 9732723] (imputed)	N
1045	chr5	60408046	60408046	rs56806779	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 7)	19,670 European ancestry individuals	NA	5q12.1		rs56806779-?	NR	5E-44				NR [9705931] (imputed)	N
1046	chr5	60440370	60440371	rs2161199	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	5q12.1	NR	rs2161199-?	NR	3E-8				Affymetrix [NR]	N
1046	chr5	60457633	60457634	rs34608	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	5q12.1	NR	rs34608-?	NR	7E-10	(left pericalcarine)			NR [9227495] (imputed)	N
1046	chr5	60465364	60465365	rs34619	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (min-P)	26,502 European ancestry individuals	NA	5q12.1	TBX15, WARS2	rs34619-?		5E-23				NR [7428630] (imputed)	N
1046	chr5	60465364	60465365	rs34619	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (min-P)	26,502 European ancestry individuals	NA	5q12.1	KCNK2	rs34619-?		3E-22				NR [7428630] (imputed)	N
1046	chr5	60479323	60479324	rs34611	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	5q12.1	NR	rs34611-A	0.247515	6E-10		0.05041802	[0.034-0.066] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1046	chr5	60483934	60483935	rs62366190	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income	286,301 British ancestry individuals	NA	5q12.1	CTC-436P18.1	rs62366190-G	NR	7E-12		0.013793	[0.0099-0.0177] unit increase	Affymetrix [18485882] (imputed)	N
1046	chr5	60483934	60483935	rs62366190	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	5q12.1	Intergenic	rs62366190-C	0.6562	1E-15		0.0191	[0.014-0.024] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1046	chr5	60484659	60484660	rs159540	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	5q12.1	NR	rs159540-A	0.3474	8E-13	(Pericalcarine)	7.760156	[5.64-9.88] unit increase	Affymetrix, Illumina [NR]	N
1046	chr5	60489246	60489247	rs159544	29899525	Klimentidis YC	2018-06-13	Int J Obes (Lond)	Genome-wide association study of habitual physical activity in over 377,000 UK Biobank participants identifies multiple variants including CADM2 and APOE.	Strenuous sports or other exercises	124,842 European ancestry active cases, 225,650 European ancestry inactive controls	NA	5q12.1	CTC-436P18.1	rs159544-?	0.39	1E-9		1.0309278		Affymetrix [11800000] (imputed)	N
1046	chr5	60496979	60496980	rs159368	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	5q12.1	CTC-436P18.1	rs159368-G	0.2934	3E-10		0.014064936	[0.0097-0.0184] unit increase	Affymetrix [up to 18485882] (imputed)	N
1046	chr5	60496979	60496980	rs159368	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income	286,301 British ancestry individuals	NA	5q12.1	CTC-436P18.1	rs159368-G	NR	5E-10		0.012492	[0.0086-0.0164] unit increase	Affymetrix [18485882] (imputed)	N
1046	chr5	60499130	60499131	rs171748	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	5q12.1	CTC-436P18.1, ELOVL7, ERCC8, NDUFAF2, SMIM15	rs171748-A		6E-9		1.06	[1.04-1.08]	Affymetrix, Illumina [NR]	N
1046	chr5	60499130	60499131	rs171748	23974872	Ripke S	2013-08-25	Nat Genet	Genome-wide association analysis identifies 13 new risk loci for schizophrenia.	Schizophrenia	5,001 European ancestry cases, 6,243 European ancestry controls, 8,832 cases, 12,067 controls	4,801 European ancestry cases, 4,741 European ancestry controls, 2,612 European and unknown ancestry cases, 15,021 European and unknown ancestry controls, 581 trios	5q12.1	ZSWIM6, C5orf43	rs171748-A	0.471	4E-8		1.078	[1.05-1.11]	Affymetrix, Illumina [9871789]	N
1046	chr5	60499184	60499185	rs194369	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	5q12.1	Intergenic	rs194369-A	0.5222	8E-22	(MTAG)	0.0172	[0.014-0.021] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1046	chr5	60500272	60500273	rs159365	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income	286,301 British ancestry individuals	NA	5q12.1	CTC-436P18.1, CTC-436P18.3	rs159365-G	NR	9E-15		0.015664	[0.012-0.02] unit increase	Affymetrix [18485882] (imputed)	N
1046	chr5	60503132	60503133	rs150534	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	5q12.1	CTC-436P18.1, CTC-436P18.3	rs150534-A	0.4754	3E-14		0.015420535	[0.011-0.019] unit increase	Affymetrix [up to 18485882] (imputed)	N
1046	chr5	60506273	60506274	rs256377	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	5q12.1	Intergenic	rs256377-A	0.534	4E-16		0.0159	[0.012-0.02] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1046	chr5	60506388	60506388	rs145333308	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	5q12.1		rs145333308-AT	NR	9E-10		0.0132	[0.0089-0.0175] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
1046	chr5	60506388	60506388	rs145333308	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	5q12.1	CTC-436P18.1, CTC-436P18.3	rs145333308-A	0.479591	4E-11		0.014694723	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
1046	chr5	60506388	60506388	rs145333308	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	5q12.1	NR	rs145333308-I	0.520933	7E-11		0.013229	[0.0093-0.0172] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1046	chr5	60513500	60513501	rs34635	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs ADHD (ordinary least squares (OLS))	40,675 schizophrenia cases, 19,099 ADHD cases	NA	5q12.1		rs34635-?	NR	2E-8		0.0194	NR unit increase	NR [4428082] (imputed)	N
1046	chr5	60513500	60513501	rs34635	31263887	Adams MJ	2019-07-01	Int J Epidemiol	Factors associated with sharing e-mail information and mental health survey participation in large population cohorts.	Mental health study participation (completed survey)	122,647 British ancestry cases, 248,781 British ancestry controls	NA	5q12.1	CTC-436P18.1, CTC-436P18.3	rs34635-G	0.42	1E-8		0.0062136	[0.0041-0.0084] unit decrease	NR [16367095] (imputed)	N
1046	chr5	60526325	60526326	rs34631	33563987	Tyrrell J	2021-02-09	Nat Commun	Genetic predictors of participation in optional components of UK Biobank.	Acceptance of an invitation to participate in a mental health questionnaire	146,074 European ancestry cases, 148,713 European ancestry controls	NA	5q12.1	NR	rs34631-T	0.52	1E-10		0.97	[0.96, 0.98]	Affymetrix [39302896] (imputed)	N
1046	chr5	60528805	60528806	rs34627	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	5q12.1	ENSG00000249279	rs34627-A	NR	3E-9		5.953	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1046	chr5	60531219	60531220	rs2055375	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	5q12.1	ENSG00000249279	rs2055375-T	NR	2E-10		0.018574337	[0.013-0.024] unit decrease	Affymetrix [NR]	N
1046	chr5	60549519	60549520	rs62366215	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	67,764 individuals	NA	5q12.1	NR	rs62366215-?		4E-10				NR [8377093]	N
1046	chr5	60550040	60550041	rs6868457	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	65,967 individuals	NA	5q12.1	NR	rs6868457-?		2E-10				NR [8377093]	N
1046	chr5	60554933	60554934	rs113474297	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	5q12.1		rs113474297-T	0.1231	1E-9		47.16901	z score increase	NR [6814003]	N
1046	chr5	60554933	60554934	rs113474297	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	5q12.1	NR	rs113474297-T	0.1264	8E-10		0.020868188	NR unit decrease	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
1047	chr5	60559155	60559156	rs36198109	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	5q12.1	CTC-436P18.3	rs36198109-A	0.3879	1E-10		0.013444317	[0.0094-0.0175] unit decrease	Affymetrix [up to 18485882] (imputed)	N
1047	chr5	60559155	60559156	rs36198109	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income	286,301 British ancestry individuals	NA	5q12.1	CTC-436P18.3	rs36198109-A	NR	4E-9		0.011838	[0.0079-0.0158] unit decrease	Affymetrix [18485882] (imputed)	N
1047	chr5	60559155	60559156	rs36198109	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5q12.1		rs36198109-?	NR	6E-9				NR [~ 8900000] (imputed)	N
1047	chr5	60565863	60565864	rs10037643	34413389	Ruggiero D	2021-08-19	Sci Rep	Genetics of PlGF plasma levels highlights a role of its receptors and supports the link between angiogenesis and immunity.	Placenta growth factor levels	1,600 European ancestry individuals	468 European ancestry individuals	5q12.1		rs10037643-A	0.46	7E-6		0.018	[0.01-0.026] unit increase	Illumina [8281256] (imputed)	N
1047	chr5	60565863	60565864	rs10037643	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	5q12.1	NR	rs10037643-?	NR	3E-8	(left pericalcarine)			NR [9227495] (imputed)	N
1047	chr5	60576277	60576278	rs10041973	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	5q12.1		rs10041973-T	NR	5E-8		0.0165	[0.011-0.022] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
1047	chr5	60586624	60586625	rs4352559	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	5q12.1	CTC-436P18.3	rs4352559-T	NR	2E-9		0.0169573	[0.011-0.023] unit decrease	Affymetrix [319769] (imputed)	N
1047	chr5	60586624	60586625	rs4352559	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	5q12.1	CTC-436P18.3	rs4352559-T	NR	1E-9		0.0171973	[0.012-0.023] unit decrease	Affymetrix [319769] (imputed)	N
1047	chr5	60598542	60598543	rs4391122	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	5q12.1	ZSWIM6	rs4391122-?		1E-10				NR [6786993] (imputed)	N
1047	chr5	60598542	60598543	rs4391122	31268507	Periyasamy S	2019-07-03	JAMA Psychiatry	Association of Schizophrenia Risk With Disordered Niacin Metabolism in an Indian Genome-wide Association Study.	Schizophrenia	816 Indian ancestry cases, 900 Indian ancestry controls, 505 Indian ancestry cases and 871 Indian ancestry controls from 405 families, up to 36,989 European and unknown ancestry cases, up to 113,075 European and unknown ancestry controls	NA	5q12.1	NR	rs4391122-?	NR	1E-13				Illumina [up to 5582932] (imputed)	N
1047	chr5	60598542	60598543	rs4391122	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	5q12.1	ZSWIM6	rs4391122-A	NR	9E-13	(EA)	1.0811	[1.06-1.1]	Illumina [6627481] (imputed)	N
1047	chr5	60598542	60598543	rs4391122	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	5q12.1	ZSWIM6	rs4391122-A	NR	5E-13		1.074	[1.05-1.09]	Illumina [6627481] (imputed)	N
1047	chr5	60598542	60598543	rs4391122	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	5q12.1	CTC-436P18.1, DEPDC1B, ELOVL7, ERCC8, NDUFAF2, SMIM15, ZSWIM6	rs4391122-?		2E-9		1.0638298	[1.04-1.08]	Affymetrix, Illumina [NR]	N
1047	chr5	60598542	60598543	rs4391122	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	5q12.1	NR	rs4391122-G	NR	2E-13		1.0869565	[NR]	Illumina [7158791] (imputed)	N
1047	chr5	60598542	60598543	rs4391122	25056061	Ripke S	2014-07-22	Nature	Biological insights from 108 schizophrenia-associated genetic loci.	Schizophrenia	32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	1,513 European ancestry cases, 66,236 European ancestry controls	5q12.1	ZSWIM6	rs4391122-G	0.468	1E-14		1.0845987	[1.06-1.11]	Affymetrix, Illumina [9005918] (imputed)	N
1047	chr5	60601433	60601434	rs4583848	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	5q12.1	ZSWIM6	rs4583848-C	0.499	8E-21		0.018904181	[0.015-0.023] unit decrease	Affymetrix [up to 18485882] (imputed)	N
1047	chr5	60601433	60601434	rs4583848	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income	286,301 British ancestry individuals	NA	5q12.1	ZSWIM6	rs4583848-C	NR	1E-13		0.01504	[0.011-0.019] unit decrease	Affymetrix [18485882] (imputed)	N
1047	chr5	60606481	60606482	rs75556712	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	5q12.1	ZSWIM6	rs75556712-A	0.1724	8E-11		0.017378556	[0.012-0.023] unit decrease	Affymetrix [up to 18485882] (imputed)	N
1047	chr5	60614878	60614879	rs4132385	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	5q12.1	NR	rs4132385-?	NR	6E-12		1.06727	[1.05-1.09]	Affymetrix, Illumina [12447948] (imputed)	N
1047	chr5	60615885	60615886	rs6890684	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	5q12.1	ZSWIM6	rs6890684-A	NR	4E-8		5.478	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1047	chr5	60615885	60615886	rs6890684	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	5q12.1	ZSWIM6	rs6890684-A	NR	2E-10		0.019480323	[0.013-0.026] unit increase	Affymetrix [NR]	N
1047	chr5	60620979	60620980	rs7701440	29483656	Pardinas AF	2018-02-26	Nat Genet	Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.	Schizophrenia	40,675 European ancestry cases, 64,643 European ancestry controls	1,651 European ancestry cases, 4,111 cases, 142,717 European ancestry controls, 11,507 controls	5q12.1	ZSWIM6	rs7701440-?	NR	4E-14		1.0752687	[1.06-1.09]	Illumina [8000000] (imputed)	N
1047	chr5	60620979	60620980	rs7701440	27046643	Davies G	2016-04-05	Mol Psychiatry	Genome-wide association study of cognitive functions and educational attainment in UK Biobank (N=112 151).	Educational attainment	111,114 European ancestry individuals	NA	5q12.1	Intergenic	rs7701440-?	NR	4E-8		0.0233502	[NR] unit decrease	Affymetrix [~ 17300000] (imputed)	N
1047	chr5	60621838	60621839	rs4700418	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	5q12.1		rs4700418-G	NR	1E-10		0.0109	[0.0076-0.0142] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1047	chr5	60642346	60642347	rs6449528	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Schizophrenia (MTAG)	at least 33,640 European ancestry cases, at least 43,456 European ancestry controls	NA	5q12.1	NR	rs6449528-A	0.4732	2E-10		0.0689504	[0.048-0.09] unit increase	NR [NR]	N
1047	chr5	60642594	60642595	rs4604142	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Bipolar disorder (MTAG)	65,682 individuals	NA	5q12.1	NR	rs4604142-?		4E-8				NR [520857]	N
1047	chr5	60643512	60643513	rs6449529	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Schizophrenia (MTAG)	940,613 European ancestry individuals	NA			rs6449529-?	NR	3E-12				NR [2625067]	N
1047	chr5	60643512	60643513	rs6449529	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Bipolar disorder (MTAG)	1,450,972 European ancestry individuals	NA			rs6449529-?	NR	6E-9				NR [2625067]	N
1047	chr5	60644402	60644403	rs113552169	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	5q12.1		rs113552169-C	0.9816	3E-8		0.0294	[0.019-0.04] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1047	chr5	60662165	60662166	rs75686262	33545615	Hsu LA	2021-01-19	Atherosclerosis	Circulating chemerin levels are determined through circulating platelet counts in nondiabetic Taiwanese people: A bidirectional Mendelian randomization study.	Platelet count	17,037 Han Chinese ancestry individuals	NA	5q12.1	ZSWIM6	rs75686262-?	NR	2E-9		5.104	[3.68-6.53] unit increase (adjusted)	Affymetrix [603527]	N
1047	chr5	60683122	60683123	rs11738493	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume (adjusted for hypertension)	46,055 European ancestry individuals	NA	5q12.1	ZSWIM6	rs11738493-C	0.1394	4E-6		0.043	[0.025-0.061] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1047	chr5	60683122	60683123	rs11738493	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	48,454 European ancestry individuals	NA	5q12.1	ZSWIM6	rs11738493-C	0.1394	5E-6		0.042	[0.024-0.06] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1047	chr5	60685756	60685757	rs4490539	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	5q12.1	ZSWIM6	rs4490539-G	0.3036	3E-13		0.016077511	[0.012-0.02] unit decrease	Affymetrix [up to 18485882] (imputed)	N
1047	chr5	60685756	60685757	rs4490539	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income	286,301 British ancestry individuals	NA	5q12.1	ZSWIM6	rs4490539-G	NR	5E-10		0.012533	[0.0086-0.0165] unit decrease	Affymetrix [18485882] (imputed)	N
1047	chr5	60685756	60685757	rs4490539	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	5q12.1	Intergenic	rs4490539-A	0.7039	2E-28	(MTAG)	0.02	[0.016-0.024] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1047	chr5	60685756	60685757	rs4490539	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	5q12.1		rs4490539-A	0.6983	1E-20		0.0142	[0.011-0.017] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1047	chr5	60685756	60685757	rs4490539	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	5q12.1	Intergenic	rs4490539-A	0.6983	6E-25	(MTAG)	0.0147	[0.012-0.017] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1048	chr5	60696322	60696323	rs72761442	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	5q12.1	CTC-436P18.1, DEPDC1B, ELOVL7, ERCC8, NDUFAF2, SMIM15, ZSWIM6	rs72761442-A		1E-9		1.08	[1.05-1.10]	Affymetrix, Illumina [NR]	N
1048	chr5	60714750	60714751	rs149262078	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	5q12.1		rs149262078-T	NR	2E-28		0.0498	[0.041-0.059] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1048	chr5	60714750	60714751	rs149262078	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	5q12.1		rs149262078-T	0.161818	1E-26		0.0490468	[0.04-0.058] unit increase	Illumina [13478928] (imputed)	N
1048	chr5	60715445	60715446	rs6449532	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	5q12.1	ZSWIM6	rs6449532-C	0.63966	3E-14		0.0110534	[0.0082-0.0139] unit increase	Affymetrix [12370749]	N
1048	chr5	60720699	60720700	rs12187112	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	5q12.1	ZSWIM6	rs12187112-A	0.3568	4E-8		0.011507345	[0.0074-0.0156] unit decrease	Affymetrix [up to 18485882] (imputed)	N
1048	chr5	60722643	60722644	rs6449533	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	5q12.1		rs6449533-?	NR	5E-10				NR [~ 8900000] (imputed)	N
1048	chr5	60723153	60723154	rs77328955	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q12.1	NR	rs77328955-G	0.0400483	5E-28				Affymetrix, Illumina [24588908] (imputed)	N
1048	chr5	60731457	60731458	rs7709645	22688191	Bergen SE	2012-06-12	Mol Psychiatry	Genome-wide association study in a Swedish population yields support for greater CNV and MHC involvement in schizophrenia compared with bipolar disorder.	Schizophrenia	2,111 European ancestry cases, 2,535 European ancestry controls	11,271 European ancestry cases, 14,601 European ancestry controls	5q12.1	intergenic	rs7709645-?	NR	4E-8		1.11	[NR]	Affymetrix [745006]	N
1048	chr5	60732551	60732552	rs7714712	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	5q12.1	NR	rs7714712-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
1048	chr5	60732551	60732552	rs7714712	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	5q12.1	NA	rs7714712-A	0.3678	2E-10		0.0112	[0.0077-0.0147] unit decrease	NR [~ 27400000] (imputed)	N
1048	chr5	60733932	60733933	rs7720894	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	5q12.1	ZSWIM6	rs7720894-C	0.48	3E-8		0.015	[0.0091-0.0209] unit decrease	Illumina [6108953] (imputed)	N
1048	chr5	60734209	60734210	rs11958102	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	145,648 East Asian ancestry individuals	NA	5q12.1	NR	rs11958102-G	0.818487	1E-22		0.052582	[0.042-0.063] SD units decrease	Affymetrix, Illumina [16710488] (imputed)	N
1048	chr5	60736948	60736949	rs7719676	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income	286,301 British ancestry individuals	NA	5q12.1	ZSWIM6	rs7719676-G	NR	6E-10		0.01244	[0.0085-0.0164] unit decrease	Affymetrix [18485882] (imputed)	N
1048	chr5	60736948	60736949	rs7719676	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	5q12.1	ZSWIM6	rs7719676-G	NR	1E-9	(EA)	1.077	[1.05-1.1]	Illumina [6627481] (imputed)	N
1048	chr5	60743417	60743418	rs74419120	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	5q12.1	Intergenic	rs74419120-T	0.1774	6E-14	(MTAG)	0.0176	[0.013-0.022] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1048	chr5	60743417	60743418	rs74419120	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	5q12.1	Intergenic	rs74419120-C	0.8226	1E-9		0.0156	[0.011-0.021] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1048	chr5	60743604	60743605	rs74320437	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	5q12.1	Intergenic	rs74320437-C	0.7986	4E-19		0.0252	[0.02-0.031] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1048	chr5	60743604	60743605	rs74320437	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	5q12.1	Intergenic	rs74320437-T	0.2094	9E-11	(MTAG)	0.0182	[0.013-0.024] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1048	chr5	60754418	60754419	rs1986252	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs autism spectrum disorder (ordinary least squares (OLS))	40,675 schizophrenia cases, 18,381 autism spectrum disorder cases	NA	5q12.1		rs1986252-?	NR	8E-14		0.0225	NR unit increase	NR [4484088] (imputed)	N
1048	chr5	60754418	60754419	rs1986252	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	5q12.1	NR	rs1986252-?	NR	3E-8	(left pericalcarine)			NR [9227495] (imputed)	N
1048	chr5	60771687	60771688	rs13160801	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fish- and plant-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	5q12.1	ZSWIM6	rs13160801-?	NR	3E-8		0.0137815	[0.0089-0.0186] unit increase	Affymetrix [25921788] (imputed)	N
1048	chr5	60780993	60780994	rs10454818	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5q12.1	DKFZP686E2158	rs10454818-?	NR	5E-6	(beta aminoisobutyric acid)	0.51298326	[0.29-0.73] unit increase	Affymetrix [at least 2500000] (imputed)	N
1048	chr5	60791592	60791593	rs142089946	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	5q12.1	NR	rs142089946-G	NR	5E-7		1.1363636	[NR]	Illumina [7158791] (imputed)	N
1048	chr5	60797757	60797758	rs78922867	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Platelet count	108,208 Japanese ancestry individuals	NA	5q12.1	ZSWIM6	rs78922867-?	NR	1E-15		0.04936	[0.037-0.061] unit increase novel	Illumina [6108953] (imputed)	N
1048	chr5	60800335	60800336	rs10223052	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	5q12.1		rs10223052-A	0.3657	2E-11		55.586967	z score increase	NR [6814003]	N
1048	chr5	60800335	60800336	rs10223052	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs anorexia nervosa (ordinary least squares (OLS))	40,675 schizophrenia cases, 16,992 anorexia nervosa cases	NA	5q12.1		rs10223052-?	NR	7E-9		0.0191	NR unit increase	NR [4425810] (imputed)	N
1048	chr5	60800335	60800336	rs10223052	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	5q12.1	NR	rs10223052-A	0.337972	3E-8		0.04115782	[0.027-0.056] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1048	chr5	60800335	60800336	rs10223052	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	5q12.1	ELOVL7, ZSWIM6	rs10223052-?		9E-9				Affymetrix, Illumina [NR] (imputed)	N
1048	chr5	60800335	60800336	rs10223052	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	5q12.1	ZSWIM6	rs10223052-G	0.3513	7E-17		0.01775067	[0.014-0.022] unit decrease	Affymetrix [up to 18485882] (imputed)	N
1048	chr5	60800335	60800336	rs10223052	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	5q12.1	ZSWIM6	rs10223052-A	NR	2E-8		0.018124046	[0.012-0.024] unit increase	Affymetrix [NR]	N
1048	chr5	60800335	60800336	rs10223052	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	5q12.1	NR	rs10223052-A	0.3599	4E-12		0.01612346	NR unit increase	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
1048	chr5	60800335	60800336	rs10223052	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (college completion)	280,007 European ancestry individuals	NA	5q12.1	NR	rs10223052-A	0.3627	1E-8		1.0352668	[NR]	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
1049	chr5	60823169	60823170	rs13179617	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	5q12.1	ZSWIM6	rs13179617-T	NR	4E-8		0.017301207	[0.011-0.023] unit decrease	Affymetrix [NR]	N
1049	chr5	60847018	60847019	rs1550816	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	5q12.1	ZSWIM6	rs1550816-C	0.4252	9E-9		0.011737375	[0.0077-0.0157] unit decrease	Affymetrix [up to 18485882] (imputed)	N
1049	chr5	60847271	60847272	rs6890611	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	5q12.1	ZSWIM6	rs6890611-T	NR	5E-8		5.452	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1049	chr5	60850521	60850522	rs2084131	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	5q12.1	Intergenic	rs2084131-A	0.3759	1E-18	(MTAG)	0.015	[0.012-0.018] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1049	chr5	60853522	60853523	rs13177031	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	5q12.1		rs13177031-A	0.3703	5E-9		0.0085	[0.0056-0.0114] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1049	chr5	60853522	60853523	rs13177031	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	5q12.1	Intergenic	rs13177031-A	0.3703	2E-11	(MTAG)	0.0091	[0.0064-0.0118] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1049	chr5	60861121	60861122	rs10042706	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Non-melanoma skin cancer	5,912 European ancestry cases, 181,740 European ancestry controls		5q12.1	NR	rs10042706-A	NR	2E-6		1.1519185	[1.09-1.22]	Affymetrix [5734850] (imputed)	N
1049	chr5	60867272	60867273	rs16892523	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (multi-trait analysis)	90,939 European ancestry individuals	NA	5q12.1	ZSWIM6, C5orf64	rs16892523-C	0.89	4E-8		0.0074	NR unit decrease	Affymetrix, Illumina [8002429] (imputed)	N
1049	chr5	60867272	60867273	rs16892523	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (adjusted for vertical disc diameter)	67,040 British ancestry individuals	NA	5q12.1	ZSWIM6	rs16892523-C	0.89	3E-6		0.0067	NR unit decrease	Affymetrix [at least 8002429] (imputed)	N
1049	chr5	60893510	60893511	rs142980341	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris color (b* coordinate)	329 South Asian ancestry individuals		5q12.1	intergenic	rs142980341-C	0.061	9E-6		0.847	[0.48-1.22] unit increase	Illumina [640625] (imputed)	N
1049	chr5	60898156	60898157	rs696888	25742292	Aschebrook-Kilfoy B	2015-03-05	PLoS One	Genome-wide association study of parity in Bangladeshi women.	Number of pregnancies	1,686 Bangladeshi women	NA	5q12.1	C5orf64, ZSWIM6	rs696888-?		4E-6		0.32	unit decrease	Illumina [1211988] (imputed)	N
1049	chr5	60898156	60898157	rs696888	25742292	Aschebrook-Kilfoy B	2015-03-05	PLoS One	Genome-wide association study of parity in Bangladeshi women.	Number of children	1,686 Bangladeshi women	NA	5q12.1	C5orf64, ZSWIM6	rs696888-?		4E-6		0.34	unit decrease	Illumina [1211988] (imputed)	N
1050	chr5	60950210	60950211	rs11738335	22832961	Kamboh MI	2012-05-15	Transl Psychiatry	Genome-wide association study of Alzheimer's disease.	Alzheimer's disease	1,291 European ancestry cases, 938 European ancestry controls	509 European ancestry cases, 753 European ancestry controls, 2,218 cases, 2,583 controls	5q12.1	FLJ37543	rs11738335-?	NR	5E-6		1.2	[NR]	Illumina [2543888] (imputed)	N
1050	chr5	60951123	60951124	rs424876	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	5q12.1	NR	rs424876-G	0.38	4E-6		0.93	[0.89-0.97]	Illumina [8468885] (imputed)	N
1050	chr5	60960726	60960727	rs36033	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	5q12.1	Intergenic	rs36033-T	0.5714	2E-8	(MTAG)	0.0129	[0.0084-0.0174] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1050	chr5	60960726	60960727	rs36033	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	5q12.1	NR	rs36033-T	NR	1E-8		5.728	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1050	chr5	60971118	60971119	rs12518552	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	5q12.1	C5orf64	rs12518552-A	0.431	3E-8		0.0066	[0.0042-0.009] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
1050	chr5	61025081	61025082	rs4699982	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	5q12.1	NR	rs4699982-T	0.158658866845398	9E-6	(IGP74)	0.1943	[0.11-0.28] unit decrease	Illumina [~ 2500000] (imputed)	N
1050	chr5	61027041	61027042	rs2950218	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	5q12.1	NR	rs2950218-T	0.706	2E-11		0.00793272	[0.0056-0.0103] unit increase	NR [9732723] (imputed)	N
1050	chr5	61027041	61027042	rs2950218	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	5q12.1	NR	rs2950218-T	0.706	8E-9		0.00838151	[0.0055-0.0112] unit increase	NR [~ 9732723] (imputed)	N
1050	chr5	61030953	61030954	rs2974454	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	5q12.1	Intergenic	rs2974454-T	0.4539	3E-8	(MTAG)	0.0092	[0.0059-0.0125] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1050	chr5	61055556	61055557	rs1501847	30713548	Schurz H	2019-01-18	Front Genet	A Sex-Stratified Genome-Wide Association Study of Tuberculosis Using a Multi-Ethnic Genotyping Array.	Tuberculosis	242 South African admixed female cases, 168 South African admixed male cases, 223 South African admixed female controls, 182 South African admixed male controls	NA	5q12.1	C5orf64	rs1501847-G	NR	3E-6		1.708	[1.37-2.14]	Illumina [848325]	N
1051	chr5	61081951	61081952	rs6889177	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	5q12.1	NR	rs6889177-?	NR	3E-9	(right cerebellum white matter)			NR [9227495] (imputed)	N
1051	chr5	61102780	61102781	rs77652464	28030426	Mahmoudpour SH	2017-03-27	Pharmacogenet Genomics	Meta-analysis of genome-wide association studies on the intolerance of angiotensin-converting enzyme inhibitors.	Angiotensin-converting enzyme inhibitor intolerance	972 European ancestry intolerant individuals, 4,189 European ancestry tolerant individuals	NA	5q12.1	C5orf64	rs77652464-?	0.072725	9E-6		1.858855	[1.414607-2.442616]	Affymetrix, Illumina [NR] (imputed)	N
1052	chr5	61211864	61211865	rs1820716	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5q12.1	KIF2A	rs1820716-?	NR	1E-6	(tauro deoxycholate)	0.19724916	[0.12-0.28] unit increase	Affymetrix [at least 2500000] (imputed)	N
1052	chr5	61317973	61317974	rs112201895	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure	35,269 European ancestry cases, 63,451 European ancestry controls	NA	5q12.1	NR	rs112201895-A	0.0419832	2E-6		1.066	[1.04-1.09]	Affymetrix [7791636] (imputed)	N
1053	chr5	61410492	61410493	rs72767016	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	5q12.1		rs72767016-?	NR	1E-12				NR [~ 8900000] (imputed)	N
1053	chr5	61437708	61437710	rs372948323	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body fat mass	3,399 whole genome sequenced individuals, 11,802 European ancestry individuals	10,670 European ancestry individuals	5q12.1	RN7SKP157	rs372948323-CTG	0.9985	6E-6		1.7978	[1.02-2.58] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1054	chr5	61480288	61480289	rs3909436	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	5q12.1		rs3909436-C	0.575787	3E-9		0.013330232	[0.0089-0.0177] unit decrease	Affymetrix [93095623] (imputed)	N
1054	chr5	61480288	61480289	rs3909436	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	5q12.1		rs3909436-?	NR	1E-7				NR [~ 8900000] (imputed)	N
1054	chr5	61509654	61509655	rs60157091	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	5q12.1		rs60157091-?	NR	3E-15		0.0212	unit increase	NR [NR]	N
1054	chr5	61509654	61509655	rs60157091	30718901	Howard DM	2019-02-04	Nat Neurosci	Genome-wide meta-analysis of depression identifies 102 independent variants and highlights the importance of the prefrontal brain regions.	Depression	118,811 European ancestry cases, 327,427 European ancestry controls, 127,552 cases, 233,763 controls	414,055 European ancestry cases, 892,299 European ancestry controls	5q12.1	NR	rs60157091-T	0.515	6E-21		1.021	[1.016-1.025]	NR [8098588] (imputed)	N
1054	chr5	61509654	61509655	rs60157091	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	5q12.1	NR	rs60157091-T	0.51767763342731	2E-9		0.005497428	[0.0037-0.0073] unit increase	NR [NR]	N
1054	chr5	61514610	61514611	rs12520974	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	5q12.1	NR	rs12520974-C	0.5154	2E-9		1.0362694	[1.02-1.05]	Affymetrix, Illumina [NR] (imputed)	N
1054	chr5	61514610	61514611	rs12520974	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	5q12.1	NR	rs12520974-C	0.519732736274541	2E-12		0.008002018	[0.0058-0.0102] unit increase	NR [NR]	N
1054	chr5	61516624	61516625	rs2371220	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	5q12.1	NR	rs2371220-A	0.517690362766304	1E-11		0.00957335	[0.0068-0.0123] unit increase	NR [NR]	N
1054	chr5	61517280	61517281	rs4700486	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	5q12.1	NR	rs4700486-G	0.577342	7E-12		0.012794	[0.0091-0.0165] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1054	chr5	61531217	61531218	rs35179196	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	5q12.1		rs35179196-A	0.414453	1E-17		0.019579705	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1054	chr5	61531217	61531218	rs35179196	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	5q12.1		rs35179196-A	0.414445	2E-27		0.024714854	[0.02-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
1054	chr5	61531500	61531501	rs10939934	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q12.1	NR	rs10939934-G	0.56223	6E-10				Affymetrix, Illumina [24246363] (imputed)	N
1054	chr5	61531500	61531501	rs10939934	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q12.1	NR	rs10939934-G	0.5595	2E-10				Affymetrix, Illumina [20825802] (imputed)	N
1054	chr5	61531500	61531501	rs10939934	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	5q12.1	NR	rs10939934-G	0.577799	2E-11		0.013074	[0.0093-0.0169] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
1054	chr5	61531500	61531501	rs10939934	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	5q12.1	NR	rs10939934-A	0.422369	2E-10		0.00754003	[0.0051-0.01] unit increase	Affymetrix [16585854] (imputed)	N
1054	chr5	61531500	61531501	rs10939934	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	5q12.1	NR	rs10939934-A	0.422369	2E-7		0.00712902	[0.0043-0.01] unit increase	Affymetrix [16585866] (imputed)	N
1054	chr5	61535123	61535124	rs10062757	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q12.1	NR	rs10062757-C	0.389918	2E-24				Affymetrix, Illumina [24588908] (imputed)	N
1054	chr5	61535123	61535124	rs10062757	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	5q12.1	NR	rs10062757-C	0.41532	3E-26		0.019697	[0.016-0.023] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1054	chr5	61535123	61535124	rs10062757	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	5q12.1	intergenic	rs10062757-C	0.4137	6E-16		0.02970023	[0.022-0.037] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1054	chr5	61540256	61540257	rs4099245	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	5q12.1		rs4099245-A	0.415325	7E-15		0.017855361	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1054	chr5	61553880	61553881	rs10062049	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	5q12.1	intergenic	rs10062049-T	0.1473	6E-10		0.2352	[0.16-0.31] mmHg increase	Affymetrix [NR] (imputed)	N
1054	chr5	61553880	61553881	rs10062049	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	5q12.1	KIF2A	rs10062049-T	0.1365	1E-21		0.2113	[0.17-0.25] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1054	chr5	61560977	61560978	rs4700004	30049742	Terzikhan N	2018-07-26	Eur Respir J	Heritability and genome-wide association study of diffusing capacity of the lung.	Diffusing capacity of the lung for carbon monoxide traits	8,372 European ancestry individuals	NA	5q12.1	Intergenic	rs4700004-A		6E-7	(DLCO per alveolar volume)	0.02	[0.012-0.028] unit decrease	Affymetrix, Illumina [NR]	N
1054	chr5	61592575	61592576	rs13163533	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	5q12.1		rs13163533-G	NR	4E-14		0.027	[0.02-0.034] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
1054	chr5	61592575	61592576	rs13163533	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	5q12.1		rs13163533-G	NR	1E-13		0.0275	[0.02-0.035] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1054	chr5	61592575	61592576	rs13163533	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	5q12.1		rs13163533-?	NR	1E-13				NR [~ 8900000] (imputed)	N
1055	chr5	61629203	61629204	rs264527	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	5q12.1	NR	rs264527-A	0.052189	4E-12		0.028608	[0.021-0.037] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
1055	chr5	61708832	61708832	rs10644456	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	5q12.1	KIF2A, IPO11	rs10644456-CGA	0.9473979	5E-11		0.033258934	[0.023-0.043] unit decrease	Affymetrix [93095623] (imputed)	N
1055	chr5	61708832	61708832	rs10644456	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	5q12.1	KIF2A, IPO11	rs10644456-CGA	0.9473393	2E-10		0.032137986	[0.022-0.042] unit decrease	Affymetrix [93095623] (imputed)	N
1055	chr5	61708832	61708832	rs10644456	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	5q12.1	KIF2A, IPO11	rs10644456-CGA	0.9473611	1E-9		0.0301642	[0.021-0.039] unit decrease	Affymetrix [93095623] (imputed)	N
1056	chr5	61763851	61763852	rs40110	30049742	Terzikhan N	2018-07-26	Eur Respir J	Heritability and genome-wide association study of diffusing capacity of the lung.	Diffusing capacity of the lung for carbon monoxide traits	8,372 European ancestry individuals	NA	5q12.1	Intergenic	rs40110-A		9E-7	(DLCO per alveolar volume)	0.02	[0.013-0.027] unit increase	Affymetrix, Illumina [NR]	N
1056	chr5	61768372	61768374	rs34782409	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	5q12.1		rs34782409-C	NR	4E-11		0.0269	[0.019-0.035] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1056	chr5	61782802	61782803	rs141302721	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		KIF2A	rs141302721-?	NR	3E-10	(female)	0.544682	[NR] unit increase	Affymetrix [NR] (imputed)	N
1056	chr5	61832269	61832269	rs774799550	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	5q12.1	NR	rs774799550-CATTT	0.607008	7E-15		0.00695042	[0.0051-0.0088] unit increase	Affymetrix [16582909] (imputed)	N
1056	chr5	61832269	61832269	rs774799550	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	5q12.1	NR	rs774799550-CATTT	0.607008	8E-12		0.00651111	[0.0045-0.0085] unit increase	Affymetrix [16582965] (imputed)	N
1057	chr5	61891754	61891755	rs16890854	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5q12.1	ISCA1L	rs16890854-?	NR	5E-6	(SM 18:0)	0.4640553	[0.26-0.66] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1057	chr5	61900109	61900110	rs6897129	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	5q12.1	IPO11	rs6897129-A	0.667	3E-8		0.007	[0.0045-0.0095] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
1057	chr5	61900109	61900110	rs6897129	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	5q12.1	LRRC70	rs6897129-A	0.6678	1E-10		0.013310496	[0.0093-0.0173] unit increase	Illumina [9339358] (imputed)	N
1057	chr5	61912325	61912326	rs111639197	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on educational attainment (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	5q12.1		rs111639197-?	NR	1E-9				NR [NR]	N
1057	chr5	61912325	61912326	rs111639197	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on cognitive performance (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	5q12.1		rs111639197-?	NR	4E-8				NR [NR]	N
1057	chr5	61926378	61926379	rs918606	30049742	Terzikhan N	2018-07-26	Eur Respir J	Heritability and genome-wide association study of diffusing capacity of the lung.	Diffusing capacity of the lung for carbon monoxide traits	8,372 European ancestry individuals	NA	5q12.1	IPO11	rs918606-A		6E-8	(DLCO per alveolar volume)	0.02	[0.013-0.027] unit decrease	Affymetrix, Illumina [NR]	N
1057	chr5	61951415	61951416	rs2216707	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	5q12.1	NR	rs2216707-C	0.829004	1E-10		0.00848634	[0.0055-0.0115] unit increase	Affymetrix [16582621] (imputed)	N
1057	chr5	61951415	61951416	rs2216707	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	5q12.1	NR	rs2216707-C	0.829004	1E-8		0.00815489	[0.0049-0.0114] unit increase	Affymetrix [16582614] (imputed)	N
1058	chr5	62008837	62008838	rs144514323	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Job coding: building or civil engineering technician, structural engineering technician, survey technician (UKB data field 22601_31143051)	151 European ancestry cases, 112,127 European ancestry controls	NA	5q12.1		rs144514323-T	0.003159	3E-9		10.22	[6.86-13.58] unit increase	NR [11842647] (imputed)	N
1058	chr5	62008837	62008838	rs144514323	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Job SOC coding: Building and civil engineering technicians (UKB data field 22617_3114)	156 European ancestry cases, 113,685 European ancestry controls	NA	5q12.1		rs144514323-T	0.003181	4E-9		9.81	[6.55-13.07] unit increase	NR [11842647] (imputed)	N
1058	chr5	62011982	62011983	rs6871803	21294900	Charles BA	2011-02-04	BMC Med Genomics	A genome-wide association study of serum uric acid in African Americans.	Uric acid levels	1,017 African American individuals	NA	5q12.1	ISCA1P1	rs6871803-T	0.24	8E-6		0.176	[0.1-0.252] unit increase	Affymetrix [2366856] (imputed)	N
1058	chr5	62038923	62038924	rs11745652	33382417	Batai K	2020-12-31	J Nutr	Genome-Wide Association Study of Response to Selenium Supplementation and Circulating Selenium Concentrations in Adults of European Descent.	Plasma selenium concentration	1,211 European ancestry individuals	NA	5q12.1	IPO11	rs11745652-?	0.161	3E-7		0.022	[0.014-0.03] unit decrease	Illumina [7663546] (imputed)	N
1058	chr5	62074717	62074718	rs16891077	24204828	Zheng JS	2013-10-28	PLoS One	Genome-wide contribution of genotype by environment interaction to variation of diabetes-related traits.	Homeostasis model assessment of insulin resistance (dietary factor interaction)	820 European ancestry individuals	NA	5q12.1	HTR1A, ISCA1L	rs16891077-A	0.209	1E-9	(Carbohydrate)			Affymetrix [590000]	N
1058	chr5	62074717	62074718	rs16891077	24204828	Zheng JS	2013-10-28	PLoS One	Genome-wide contribution of genotype by environment interaction to variation of diabetes-related traits.	Fasting insulin (dietary factor interaction)	820 European ancestry individuals	NA	5q12.1	HTR1A, ISCA1L	rs16891077-A	0.209	9E-10	(Carbohydrate)			Affymetrix [590000]	N
1058	chr5	62076536	62076537	rs16891080	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (mother's age at death)	270,548 European ancestry individuals	NA	5q12.1	NR	rs16891080-A	NR	2E-6		0.07721	[0.045-0.109] unit decrease	Illumina [541493]	N
1059	chr5	62135993	62135994	rs151121608	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	5q12.1	Intergenic	rs151121608-G	0.982	8E-7	(AA)	0.335	NR unit decrease	Illumina [NR] (imputed)	N
1059	chr5	62172475	62172476	rs6886640	31339356	Hobbs BD	2019-07-24	Am J Respir Crit Care Med	Overlap of Genetic Risk Between Interstitial Lung Abnormalities and Idiopathic Pulmonary Fibrosis.	Subpleural-predominant interstitial lung abnormalities	965 European ancestry cases, 154 African American cases, 168 cases, 7,255 European ancestry controls, 1,717 African American controls, 450 controls	NA	5q12.1	IPO11	rs6886640-G	0.62	8E-6		1.27	[1.14-1.40]	Affymetrix, Illumina [at least 412049] (imputed)	N
1059	chr5	62172475	62172476	rs6886640	31339356	Hobbs BD	2019-07-24	Am J Respir Crit Care Med	Overlap of Genetic Risk Between Interstitial Lung Abnormalities and Idiopathic Pulmonary Fibrosis.	Interstitial lung abnormalities	1,181 European ancestry cases, 280 African American cases, 54 Hispanic cases, 184 cases, 7,255 European ancestry controls, 2,184 African American controls, 385 Hispanic controls, 450 controls	NA	5q12.1	IPO11	rs6886640-G	0.62	4E-8		1.28	[1.18-1.41]	Affymetrix, Illumina [at least 412049] (imputed)	N
1059	chr5	62240925	62240926	rs112730887	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Ejection fraction in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	5q12.1	NR	rs112730887-?	NR	5E-6				Affymetrix [5486770] (imputed)	N
1060	chr5	62384698	62384699	rs71627250	23897914	Wang H	2013-07-29	Pediatrics	A genome-wide association study (GWAS) for bronchopulmonary dysplasia.	Bronchopulmonary dysplasia	117 African American newborn cases, 108 African American newborn controls, 448 Hispanic newborn cases, 460 Hispanic newborn controls, 74 Asian or Pacific Islander ancestry newborn cases, 93 Asian or Pacific Islander ancestry newborn controls, 174 European ancestry newborn cases, 216 European ancestry newborn controls, 14 newborn cases, 22 newborn controls	371 newborn cases, 424 newborn controls	5q12.1	HTR1A, ISCA1L	rs71627250-A	0.1	6E-6		1.65	[1.33-2.04]	Illumina [1795103]	N
1061	chr5	62447767	62447768	rs62376005	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	5q12.1	NR	rs62376005-?	NR	2E-6		4.75	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1061	chr5	62512668	62512669	rs164103	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	5q12.1	NR	rs164103-?	NR	7E-26				Affymetrix [NR]	N
1062	chr5	62549140	62549141	rs347661	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	5q12.1		rs347661-T	0.4347	2E-8		0.0081	[0.0054-0.0108] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1062	chr5	62549140	62549141	rs347661	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	5q12.1	Intergenic	rs347661-T	0.4347	2E-10	(MTAG)	0.0085	[0.006-0.011] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1062	chr5	62586300	62586301	rs7445832	23216389	Zuo L	2012-12-06	Alcohol Clin Exp Res	Genome-wide significant association signals in IPO11-HTR1A region specific for alcohol and nicotine codependence.	Alcohol and nicotine co-dependence	818 European ancestry cases, 1,396 European ancestry controls	Up to 907 European ancestry cases, up to 2,830 European ancestry controls, up to 449 African American cases, up to 480 African American controls	5q12.1	HTR1A, IPO11	rs7445832-A	NR	1E-9	(Combined, Australian replication)	1.15	[NR]	Illumina [805814]	N
1063	chr5	62703250	62703251	rs10071982	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	5q12.1		rs10071982-A	0.4254	1E-6		32.653965	z score increase	NR [6814003]	N
1063	chr5	62732891	62732892	rs142410822	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	5q12.1	NR	rs142410822-?	NR	8E-6		4.476	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1063	chr5	62750126	62750127	rs55810204	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	5q12.1	Intergenic	rs55810204-T	0.2953	1E-8	(MTAG)	0.0143	[0.0094-0.0192] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1063	chr5	62760827	62760828	rs12657723	33568662	Dashti HS	2021-02-10	Nat Commun	Genetic determinants of daytime napping and effects on cardiometabolic health.	Daytime nap	452,633 European ancestry individuals	541,333 European ancestry individuals	5q12.1	HTR1A, RNF180	rs12657723-T		6E-7		0.0046	[0.0028-0.0064] unit increase	Affymetrix [13304133] (imputed)	N
1064	chr5	62817899	62817900	rs255414	20935630	Speliotes EK	2010-10-10	Nat Genet	Association analyses of 249,796 individuals reveal 18 new loci associated with body mass index.	Body mass index	Up to 123,865 European ancestry individuals	Up to 125,931 European ancestry individuals	5q12.1	HTR1A	rs255414-A	0.81	1E-6				Affymetrix, Illumina, Perlegen [~ 2800000] (imputed)	N
1064	chr5	62834775	62834776	rs4700589	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	5q12.1	NR	rs4700589-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
1064	chr5	62840958	62840959	rs74910095	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	5q12.1	intergenic	rs74910095-?	NR	9E-7		0.302	[0.11-0.49] unit decrease	Illumina [at least 13000000] (imputed)	N
1064	chr5	62846888	62846889	rs255428	29317602	Hall LS	2018-01-10	Transl Psychiatry	Genome-wide meta-analyses of stratified depression in Generation Scotland and UK Biobank.	Major depressive disorder	6,997 European ancestry female cases, 16,172 European ancestry female controls, 3,852 European ancestry male cases, 16,034 European ancestry male controls	NA	5q12.1	intergenic	rs255428-A	NR	3E-6	(males)	0.13	[0.071-0.189] unit increase	Affymetrix, Illumina [7105178] (imputed)	N
1064	chr5	62866261	62866262	rs2161277	26451028	Hofer E	2015-10-08	Stroke	White Matter Lesion Progression: Genome-Wide Search for Genetic Influences.	White matter lesion progression (adjusted for white matter lesion burden at baseline)	1,085 European ancestry elderly cases, 6,688 European ancestry elderly controls	NA	5q12.1	HTR1A	rs2161277-T	0.12	8E-6		1.54	[NR]	Affymetrix, Illumina [up to 2543887] (imputed)	N
1064	chr5	62866261	62866262	rs2161277	26451028	Hofer E	2015-10-08	Stroke	White Matter Lesion Progression: Genome-Wide Search for Genetic Influences.	White matter lesion progression	1,085 European ancestry elderly cases, 6,688 European ancestry elderly controls	NA	5q12.1	HTR1A	rs2161277-T	0.12	6E-6		1.49	[NR]	Affymetrix, Illumina [up to 2543887] (imputed)	N
1065	chr5	62918415	62918416	rs775326	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	5q12.2	NR	rs775326-A	0.3155	1E-8		0.013758737	NR unit decrease	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
1065	chr5	62930014	62930015	rs262890	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	5q12.2	NR	rs262890-?		3E-15		0.0185683	[0.014-0.023] unit decrease	Affymetrix [19400418] (imputed)	N
1065	chr5	62930014	62930015	rs262890	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	5q12.2	NR	rs262890-A	NR	4E-10		6.245	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1065	chr5	62962712	62962713	rs10044158	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	5q12.2	NR	rs10044158-A	NR	3E-8		5.566	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1065	chr5	62989028	62989029	rs7703236	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q12.2	NR	rs7703236-C	0.01916	2E-8	(HEXB)	0.1057	NR unit increase	Illumina [1671387] (imputed)	N
1065	chr5	62991801	62991802	rs1812587	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	5q12.2	NR	rs1812587-G	0.487078	3E-8		0.03464922	[0.022-0.047] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1065	chr5	62991801	62991802	rs1812587	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	5q12.2		rs1812587-?	NR	6E-9				NR [~ 8900000] (imputed)	N
1065	chr5	62991801	62991802	rs1812587	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	5q12.2	Intergenic	rs1812587-T	0.4574	2E-13	(MTAG)	0.0169	[0.012-0.021] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1065	chr5	62991801	62991802	rs1812587	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	5q12.2	Intergenic	rs1812587-T	0.4574	3E-8		0.0159	[0.01-0.022] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
1065	chr5	62991801	62991802	rs1812587	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	5q12.2	NR	rs1812587-T	NR	4E-10		6.267	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1065	chr5	62991801	62991802	rs1812587	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	5q12.2	ENSG00000248285	rs1812587-T	NR	2E-10		0.019491147	[0.013-0.026] unit decrease	Affymetrix [NR]	N
1065	chr5	62995937	62995938	rs6449674	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	5q12.2	RP11-158J3.2	rs6449674-C	0.4787	2E-8		0.011356407	[0.0074-0.0153] unit decrease	Affymetrix [up to 18485882] (imputed)	N
1065	chr5	62995937	62995938	rs6449674	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	5q12.2	Intergenic	rs6449674-T	0.5164	1E-17	(MTAG)	0.0112	[0.0087-0.0137] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1065	chr5	63001048	63001049	rs1827540	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	5q12.2	Intergenic	rs1827540-A	0.5175	8E-9	(MTAG)	0.0103	[0.0068-0.0138] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1065	chr5	63001048	63001049	rs1827540	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	5q12.2	Intergenic	rs1827540-A	0.518	1E-15	(MTAG)	0.0132	[0.0099-0.0165] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1065	chr5	63001048	63001049	rs1827540	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	5q12.2	Intergenic	rs1827540-A	0.518	5E-9		0.0133	[0.0088-0.0178] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1065	chr5	63020326	63020327	rs3943933	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	5q12.2	NR	rs3943933-A	0.4797	2E-11		0.016587919	[0.012-0.021] unit increase	Affymetrix [10549349] (imputed)	N
1065	chr5	63020705	63020706	rs1503526	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	5q12.2		rs1503526-C	0.48	1E-9				NR [NR] (imputed)	N
1065	chr5	63020705	63020706	rs1503526	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	5q12.2		rs1503526-C	0.48	3E-13		0.011	% increase	NR [NR] (imputed)	N
1065	chr5	63020705	63020706	rs1503526	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	5q12.2	NR	rs1503526-T	NR	1E-7		0.014	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
1065	chr5	63020705	63020706	rs1503526	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	5q12.2	RNF180	rs1503526-T	0.50389011615646	1E-8		0.015505578	unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1065	chr5	63021637	63021638	rs1895407	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	5q12.2	NA	rs1895407-T	0.5235	5E-20		0.0155	[0.012-0.019] unit decrease	NR [~ 27400000] (imputed)	N
1065	chr5	63022063	63022064	rs1895408	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	5q12.2		rs1895408-?	NR	8E-14				NR [~ 8900000] (imputed)	N
1065	chr5	63024052	63024053	rs146354270	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	5q12.2	NR	rs146354270-?	NR	7E-6		4.481	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1065	chr5	63026279	63026280	rs4700608	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	5q12.2	NA	rs4700608-T	0.5236	4E-20		0.0155	[0.012-0.019] unit decrease	NR [~ 27400000] (imputed)	N
1065	chr5	63033717	63033718	rs10042968	23216389	Zuo L	2012-12-06	Alcohol Clin Exp Res	Genome-wide significant association signals in IPO11-HTR1A region specific for alcohol and nicotine codependence.	Alcohol and nicotine co-dependence	818 European ancestry cases, 1,396 European ancestry controls	Up to 907 European ancestry cases, up to 2,830 European ancestry controls, up to 449 African American cases, up to 480 African American controls	5q12.2	NA	rs10042968-G	NR	8E-7	(Combined, AA replication)	1.42	[NR]	Illumina [805814]	N
1065	chr5	63034605	63034606	rs10805383	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		5q12.2	HTR1A	rs10805383-G	0.519459	3E-14		0.0104667	[0.0078-0.0132] unit decrease	Affymetrix [12370749]	N
1065	chr5	63034605	63034606	rs10805383	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	5q12.2	NR	rs10805383-?	NR	4E-14				Affymetrix [~ 8270000] (imputed)	N
1065	chr5	63034605	63034606	rs10805383	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	5q12.2		rs10805383-A	0.4879	2E-13		0.0103	[0.0076-0.013] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1065	chr5	63043436	63043437	rs260995	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	5q12.2	NR	rs260995-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
1066	chr5	63094578	63094579	rs116795394	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,963 Sub-Saharan African ancestry females, 3,931 Sub-Saharan African ancestry males	NA	5q12.2		rs116795394-G	0.95099	9E-6		0.0238774	[0.012-0.036] unit increase	Illumina [7666802] (imputed)	N
1066	chr5	63155383	63155384	rs358818	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5q12.2	RNF180	rs358818-?	NR	8E-6	(beta aminoisobutyric acid)	0.49635717	[0.28-0.71] unit increase	Affymetrix [at least 2500000] (imputed)	N
1067	chr5	63265890	63265891	rs13361335	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	5q12.3		rs13361335-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1068	chr5	63394169	63394170	rs1494630	24939585	Fransen E	2014-06-18	Eur J Hum Genet	Genome-wide association analysis demonstrates the highly polygenic character of age-related hearing impairment.	Age-related hearing impairment	1,489 European ancestry individuals	NA	5q12.3	intergenic	rs1494630-?		1E-6	(PC2)	0.1452	[NR] unit decrease	Illumina [4167292] (imputed)	N
1069	chr5	63567600	63567600	rs201564204	29532581	Hallfors J	2018-03-13	Addict Biol	Genome-wide association study in Finnish twins highlights the connection between nicotine addiction and neurotrophin signaling pathway.	Nicotine withdrawal symptom count	1,703 Finnish ancestry ever smoker individuals from up to 739 families	NA	5q12.3	NR	rs201564204-CAAAT	0.25	2E-6		0.41	[0.23-0.59] unit decrease	Illumina [9469131] (imputed)	N
1070	chr5	63639598	63639599	rs75385242	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	5q12.3	NR	rs75385242-?	NR	6E-6		4.539	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1071	chr5	63714444	63714445	rs4084594	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	5q12.3	NR	rs4084594-T	NR	4E-6		1.05	[NR]	Illumina [7158791] (imputed)	N
1071	chr5	63736473	63736474	rs271695	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	5q12.3		rs271695-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1071	chr5	63738571	63738572	rs4362902	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	5q12.3	NA	rs4362902-T		3E-8		0.0115668	[0.0075-0.0157] unit decrease	Illumina [13288253] (imputed)	N
1071	chr5	63743648	63743649	rs16892721	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Periventricular white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	5q12.3	AC016561.1	rs16892721-A	0.8766	7E-6		0.04	[0.023-0.057] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1071	chr5	63787809	63787810	rs67224963	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	5q12.3		rs67224963-A	0.2052	7E-11		0.0113	[0.008-0.0146] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1071	chr5	63788772	63788773	rs56330207	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	5q12.3	Intergenic	rs56330207-A	0.2184	3E-10	(MTAG)	0.01	[0.0069-0.0131] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1072	chr5	63848997	63848998	rs199906663	34586716	Chen J	2021-09-29	Mol Genet Genomic Med	Heritability and genome-wide association study of blood pressure in Chinese adult twins.	Systolic blood pressure	137 Chinese ancestry twins	NA	5q12.3		rs199906663-?	NR	3E-7				Illumina [7401356] (imputed)	N
1072	chr5	63848997	63848998	rs199906663	34586716	Chen J	2021-09-29	Mol Genet Genomic Med	Heritability and genome-wide association study of blood pressure in Chinese adult twins.	Mean arterial pressure	137 Chinese ancestry twins	NA	5q12.3		rs199906663-?	NR	2E-6				Illumina [7401356] (imputed)	N
1072	chr5	63860140	63860141	rs3797051	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	5q12.3		rs3797051-T	0.7613	1E-9		0.015	[0.0091-0.0209] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
1072	chr5	63861474	63861475	rs7701529	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	5q12.3	RGS7BP	rs7701529-T	0.7606999999999999	5E-12		1.0299394		Affymetrix [11880941] (imputed)	N
1072	chr5	63861474	63861475	rs7701529	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	5q12.3		rs7701529-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1072	chr5	63874625	63874626	rs16892892	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	5q12.3		rs16892892-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1072	chr5	63878966	63878967	rs6879040	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	5q12.3	Intergenic	rs6879040-T	0.5371	5E-8	(MTAG)	0.0098	[0.0063-0.0133] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1072	chr5	63878966	63878967	rs6879040	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	5q12.3	Intergenic	rs6879040-T	0.5371	8E-9	(MTAG)	0.0095	[0.0062-0.0128] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1072	chr5	63932233	63932234	rs6888159	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	5q12.3		rs6888159-?	NR	4E-11				NR [~ 8900000] (imputed)	N
1072	chr5	63932507	63932508	rs9291816	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	5q12.3	RGS7BP	rs9291816-C	0.676351	4E-19		0.0133785	[0.01-0.016] unit increase	Affymetrix [12370749]	N
1072	chr5	63940261	63940262	rs12697021	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	5q12.3		rs12697021-A	NR	4E-12		0.0123	[0.0088-0.0158] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1072	chr5	63940261	63940262	rs12697021	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	5q12.3		rs12697021-A	0.274682	2E-9		0.0181699	[0.012-0.024] unit decrease	Illumina [13479924] (imputed)	N
1072	chr5	63940261	63940262	rs12697021	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	5q12.3		rs12697021-A	NR	3E-13		0.0149	[0.011-0.019] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1072	chr5	63944518	63944519	rs1459192	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Ease of getting up in the morning	385,949 European ancestry individuals	NA	5q12.3	NR	rs1459192-T	0.3288	2E-8		0.0102	[0.0067-0.0137] unit decrease	Affymetrix, Illumina [10862568] (imputed)	N
1072	chr5	63962176	63962177	rs1035491	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	5q12.3	RGS7BP, FAM159B	rs1035491-G	0.241	6E-9	(Japanese)	0.024	[0.016-0.032] unit decrease	Illumina [6108953] (imputed)	N
1073	chr5	63967321	63967322	rs12518987	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	5q12.3	NR	rs12518987-?	NR	8E-14				Affymetrix [~ 8270000] (imputed)	N
1073	chr5	64020315	64020316	rs80170948	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	5q12.3	NR	rs80170948-T	0.0487078	1E-10		0.094233096	[0.066-0.123] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1073	chr5	64020315	64020316	rs80170948	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Verbal-numerical reasoning	171,304 British ancestry individuals	NA	5q12.3		rs80170948-?	NR	1E-8				NR [7857346] (imputed)	N
1073	chr5	64020315	64020316	rs80170948	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	5q12.3		rs80170948-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1073	chr5	64020315	64020316	rs80170948	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	5q12.3	Intergenic	rs80170948-T	0.9571	3E-9	(MTAG)	0.0336	[0.022-0.045] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1073	chr5	64020315	64020316	rs80170948	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	5q12.3	Intergenic	rs80170948-T	0.9571	8E-11		0.0459	[0.032-0.06] unit increase	Affymetrix, Illumina [10100000] (imputed)	N
1073	chr5	64020315	64020316	rs80170948	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	5q12.3	NR	rs80170948-T	NR	8E-10		6.151	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1073	chr5	64020315	64020316	rs80170948	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	5q12.3	SREK1IP1	rs80170948-T	NR	6E-9		5.805	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1073	chr5	64067751	64067752	rs2042329	27206850	Wang M	2016-03-29	Cancer Res	Genome-Wide Association Study of Bladder Cancer in a Chinese Cohort Reveals a New Susceptibility Locus at 5q12.3.	Bladder cancer	578 Han Chinese ancestry cases, 1,006 Han Chinese ancestry controls	2,828 Han Chinese ancestry cases, 3,639 Han Chinese ancestry controls	5q12.3	CWC27	rs2042329-T	0.098	5E-11		1.4	[1.27-1.55]	Illumina [478403] (imputed)	N
1073	chr5	64074729	64074730	rs7701842	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	5q12.3	NA	rs7701842-A	0.4899	3E-13		0.0124	[0.0091-0.0157] unit increase	NR [~ 27400000] (imputed)	N
1073	chr5	64076514	64076515	rs9291822	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		5q12.3	CWC27	rs9291822-C	0.485041	1E-8		0.00790436	[0.0052-0.0106] unit increase	Affymetrix [12370749]	N
1073	chr5	64076514	64076515	rs9291822	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	5q12.3	NR	rs9291822-?	NR	6E-15				Affymetrix [~ 8270000] (imputed)	N
1073	chr5	64076514	64076515	rs9291822	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	5q12.3		rs9291822-?	NR	2E-13				NR [~ 8900000] (imputed)	N
1073	chr5	64079014	64079015	rs6875372	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	NA	5q12.3	CWC27	rs6875372-T	0.4849	5E-10		0.1886	[0.13-0.25] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1073	chr5	64087022	64087023	rs12522567	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	5q12.3	NA	rs12522567-T	0.4928	2E-13		0.0119	[0.0088-0.015] unit increase	NR [~ 27400000] (imputed)	N
1074	chr5	64150533	64150534	rs80131293	26265699	Karol SE	2015-08-11	Blood	Genetics of glucocorticoid-associated osteonecrosis in children with acute lymphoblastic leukemia.	Glucocorticoid-induced osteonecrosis (age 10 years and older)	230 osteonecrosis cases, 1,238 treated controls	NA	5q12.3	CWC27	rs80131293-?	NR	3E-6				Affymetrix, Illumina [NR] (imputed)	N
1074	chr5	64155058	64155059	rs140197177	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	5q12.3	NR	rs140197177-?	NR	5E-7		5.018	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1075	chr5	64237634	64237638	rs148380716	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q12.3	NR	rs148380716-C	0.01045	6E-9	(VDAC1)	0.2875	NR unit increase	Illumina [1671387] (imputed)	N
1075	chr5	64237634	64237638	rs148380716	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q12.3	NR	rs148380716-C	0.01045	2E-8	(SDHB)	0.1718	NR unit increase	Illumina [1671387] (imputed)	N
1075	chr5	64241138	64241139	rs74566184	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5q12.3		rs74566184-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1075	chr5	64288655	64288656	rs1309551	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	5q12.3	CWC27	rs1309551-?		2E-16				Affymetrix, Illumina [NR] (imputed)	N
1075	chr5	64288704	64288705	rs1309550	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals, 6,795 African American individuals, 6,324 East Asian ancestry individuals, 2,335 South Asian ancestry individuals, 1,442 Hispanic individuals	NA	5q12.3	CWC27	rs1309550-A	NR	1E-9		0.0123	[0.0084-0.0162] unit decrease	Affymetrix, Illumina [8034757] (imputed)	N
1075	chr5	64289155	64289156	rs3776051	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	5q12.3	NR	rs3776051-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
1075	chr5	64290003	64290004	rs1309546	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals	NA	5q12.3	CWC27	rs1309546-T	0.5515	6E-10		0.0123644	[0.0085-0.0163] unit increase	Affymetrix, Illumina [8603712] (imputed)	N
1075	chr5	64295362	64295363	rs10471645	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	5q12.3	CWC27	rs10471645-C	0.835307642460374	3E-9		0.0042784	[NR] unit decrease	Affymetrix [> 30000000] (imputed)	N
1075	chr5	64296470	64296471	rs7731168	31630189	Casanova F	2019-10-20	Hum Mol Genet	A genome-wide association study implicates multiple mechanisms influencing raised urinary albumin-creatinine ratio.	Urinary albumin-to-creatinine ratio	437,027 European ancestry individuals	60,130 individuals	5q12.3	CWC27	rs7731168-C	0.233	8E-10	(EA)	0.015	[0.011-0.019] unit increase	NR [12082474] (imputed)	N
1075	chr5	64296470	64296471	rs7731168	30220432	Haas ME	2018-09-06	Am J Hum Genet	Genetic Association of Albuminuria with Cardiometabolic Disease and Blood Pressure.	Urinary albumin excretion (no hypertensive medication)	302,687 European ancestry individuals without hypertensive medication	NA	5q12.3	CWC27	rs7731168-C	0.233	1E-8		0.01183	[0.0078-0.0159] unit increase	Affymetrix [11709857] (imputed)	N
1075	chr5	64296470	64296471	rs7731168	30220432	Haas ME	2018-09-06	Am J Hum Genet	Genetic Association of Albuminuria with Cardiometabolic Disease and Blood Pressure.	Urinary albumin excretion	382,500 European ancestry individuals	NA	5q12.3	CWC27	rs7731168-C	0.233	2E-10		0.01253	[0.0087-0.0164] unit increase	Affymetrix [11709857] (imputed)	N
1075	chr5	64306310	64306311	rs1309531	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Central corneal thickness	16,204 European ancestry individuals	NA	5q12.3	CWC27	rs1309531-T	0.445	6E-11		2.648	[1.86-3.44] ?m increase	Affymetrix, Illumina [9249813] (imputed)	N
1075	chr5	64306310	64306311	rs1309531	29760442	Iglesias AI	2018-05-14	Nat Commun	Cross-ancestry genome-wide association analysis of corneal thickness strengthens link between complex and Mendelian eye diseases.	Central corneal thickness	17,803 European ancestry individuals	NA	5q12.3	CWC27	rs1309531-A	0.56	2E-10		2.4	[1.66-3.14] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1075	chr5	64310292	64310293	rs2032884	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs2032884-C	0.761554	6E-10		0.0599865	[0.039-0.081] decrease	Affymetrix [11014269] (imputed)	N
1075	chr5	64316615	64316616	rs114984365	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs114984365-G	0.935794	8E-9		0.103877	[0.067-0.141] increase	Affymetrix [11014269] (imputed)	N
1075	chr5	64325940	64325941	rs62371001	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Left ventricular global radial strain	19,260 European ancestry individuals	NA	5q12.3	CWC27	rs62371001-G	0.1742	9E-9		0.5915	[0.39-0.79] unit increase	Affymetrix [~ 9500000] (imputed)	N
1075	chr5	64325940	64325941	rs62371001	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Left ventricular global circumferential strain	19,260 European ancestry individuals	NA	5q12.3	CWC27	rs62371001-G	0.1742	1E-6		0.1983	[0.12-0.28] unit decrease	Affymetrix [~ 9500000] (imputed)	N
1075	chr5	64326786	64326787	rs11740254	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	35,422 individuals (>=25 years old)	NA	5q12.3		rs11740254-?	NR	5E-8		0.0124	[0.0081-0.0167] mm decrease	Affymetrix, Illumina [8936601] (imputed)	N
1075	chr5	64326786	64326787	rs11740254	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	29,580 European ancestry individuals, 14,462 Asian ancestry individuals	88,218 European ancestry individuals	5q12.3		rs11740254-T	0.46	5E-30		0.011	mm increase	Affymetrix, Illumina [8936601] (imputed)	N
1075	chr5	64326786	64326787	rs11740254	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	29,580 European ancestry individuals	NA	5q12.3		rs11740254-T	0.4	2E-7		0.014	mm increase	Affymetrix, Illumina [8936601] (imputed)	N
1075	chr5	64330479	64330480	rs7714577	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5q12.3	CWC27	rs7714577-G	0.834233	9E-37	(-6 ms)	0.0928606	[0.078-0.108] unit decrease	Affymetrix [10000000] (imputed)	N
1075	chr5	64330479	64330480	rs7714577	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5q12.3	CWC27	rs7714577-G	0.834233	6E-35	(10 ms)	0.0924849	[0.078-0.107] unit decrease	Affymetrix [10000000] (imputed)	N
1075	chr5	64330479	64330480	rs7714577	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5q12.3	CWC27	rs7714577-G	0.834233	6E-14	(36 ms)	0.0545143	[0.04-0.069] unit decrease	Affymetrix [10000000] (imputed)	N
1075	chr5	64330479	64330480	rs7714577	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5q12.3	CWC27	rs7714577-G	0.834233	5E-31	(-2 ms)	0.0865801	[0.072-0.101] unit decrease	Affymetrix [10000000] (imputed)	N
1075	chr5	64330479	64330480	rs7714577	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5q12.3	CWC27	rs7714577-G	0.834233	4E-38	(-12 ms)	0.0957862	[0.081-0.11] unit decrease	Affymetrix [10000000] (imputed)	N
1075	chr5	64330479	64330480	rs7714577	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5q12.3	CWC27	rs7714577-G	0.834233	4E-36	(6 ms)	0.0928082	[0.078-0.107] unit decrease	Affymetrix [10000000] (imputed)	N
1075	chr5	64330479	64330480	rs7714577	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5q12.3	CWC27	rs7714577-G	0.834233	4E-32	(2 ms)	0.086968	[0.072-0.102] unit decrease	Affymetrix [10000000] (imputed)	N
1075	chr5	64330479	64330480	rs7714577	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5q12.3	CWC27	rs7714577-G	0.834233	4E-25	(-16 ms)	0.0763465	[0.062-0.091] unit decrease	Affymetrix [10000000] (imputed)	N
1075	chr5	64330479	64330480	rs7714577	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5q12.3	CWC27	rs7714577-G	0.834233	3E-34	(4 ms)	0.0900562	[0.075-0.105] unit decrease	Affymetrix [10000000] (imputed)	N
1075	chr5	64330479	64330480	rs7714577	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5q12.3	CWC27	rs7714577-G	0.834233	3E-33	(-14 ms)	0.0880835	[0.073-0.103] unit decrease	Affymetrix [10000000] (imputed)	N
1075	chr5	64330479	64330480	rs7714577	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5q12.3	CWC27	rs7714577-G	0.834233	3E-16	(-18 ms)	0.0603648	[0.046-0.075] unit decrease	Affymetrix [10000000] (imputed)	N
1075	chr5	64330479	64330480	rs7714577	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5q12.3	CWC27	rs7714577-G	0.834233	2E-8	(-20 ms)	0.0417343	[0.027-0.056] unit decrease	Affymetrix [10000000] (imputed)	N
1075	chr5	64330479	64330480	rs7714577	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5q12.3	CWC27	rs7714577-G	0.834233	2E-40	(-10 ms)	0.0978266	[0.083-0.112] unit decrease	Affymetrix [10000000] (imputed)	N
1075	chr5	64330479	64330480	rs7714577	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5q12.3	CWC27	rs7714577-G	0.834233	2E-39	(-8 ms)	0.0965135	[0.082-0.111] unit decrease	Affymetrix [10000000] (imputed)	N
1075	chr5	64330479	64330480	rs7714577	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5q12.3	CWC27	rs7714577-G	0.834233	2E-30	(0 ms)	0.0858344	[0.071-0.101] unit decrease	Affymetrix [10000000] (imputed)	N
1075	chr5	64330479	64330480	rs7714577	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5q12.3	CWC27	rs7714577-G	0.834233	1E-36	(8 ms)	0.0937614	[0.079-0.108] unit decrease	Affymetrix [10000000] (imputed)	N
1075	chr5	64330479	64330480	rs7714577	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5q12.3	CWC27	rs7714577-G	0.834233	1E-33	(-4 ms)	0.0888939	[0.074-0.104] unit decrease	Affymetrix [10000000] (imputed)	N
1075	chr5	64330479	64330480	rs7714577	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5q12.3	CWC27	rs7714577-G	0.834233	1E-14	(34 ms)	0.0561376	[0.041-0.071] unit decrease	Affymetrix [10000000] (imputed)	N
1075	chr5	64347620	64347621	rs266590	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	5q12.3	SDCCAG10, CWC27	rs266590-G	0.485	9E-6	(Gestational age )	0.05	[NR] wk increase	Illumina [899892]	N
1075	chr5	64355059	64355060	rs370763	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Inguinal hernia	16,725 European ancestry cases, 428,356 European ancestry controls, 1,664 East Asian ancestry cases, 177,062 East Asian ancestry controls	NA	5q12.3		rs370763-A	NR	1E-17		0.1043	[0.08-0.128] unit increase	Affymetrix, Illumina [25841416] (imputed)	N
1075	chr5	64355059	64355060	rs370763	26686553	Jorgenson E	2015-12-21	Nat Commun	A genome-wide association study identifies four novel susceptibility loci underlying inguinal hernia.	Inguinal hernia	5,295 European ancestry cases, 67,510 European ancestry controls	9,701 European ancestry cases, 82,743 European ancestry controls	5q12.3	ADAMTS6	rs370763-A	0.67	4E-9		1.09	[1.06-1.12]	Affymetrix [6161781] (imputed)	N
1076	chr5	64381432	64381433	rs264758	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5q12.3		rs264758-?	NR	6E-24				NR [~ 8900000] (imputed)	N
1076	chr5	64382006	64382006	rs55821147	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	5q12.3	Y_RNA	rs55821147-TA	NR	2E-8		0.0180457	[0.012-0.024] unit increase	Affymetrix [323123] (imputed)	N
1076	chr5	64382736	64382737	rs264760	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	5q12.3	Y_RNA	rs264760-A	0.2808	1E-6		0.0377	[0.023-0.053] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1076	chr5	64392905	64392907	rs386688633	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	5q12.3	Y_RNA	rs386688633-T	NR	2E-8		0.0184725	[0.012-0.025] unit decrease	Affymetrix [323123] (imputed)	N
1076	chr5	64417677	64417678	rs7729539	23166209	Smith JG	2012-11-19	Circ Cardiovasc Genet	Impact of ancestry and common genetic variants on QT interval in African Americans.	QT interval	13,105 African American individuals	NA	5q12.3	NR	rs7729539-C	0.20	1E-6		2.59	[1.55-3.63] unit decrease	Affymetrix, Illumina [2800000] (imputed)	N
1076	chr5	64433399	64433400	rs17206232	23212062	Fanous AH	2012-12-01	Am J Psychiatry	Genome-wide association study of clinical dimensions of schizophrenia: polygenic effect on disorganized symptoms.	Schizophrenia	2,454 European ancestry cases	NA	5q12.3	ADAMTS6, ADAM	rs17206232-?	NR	1E-6	(Positive symptoms)	0.135	[NR] unit increase	Affymetrix [696491]	N
1076	chr5	64447776	64447777	rs17206779	23727862	Savage SA	2013-06-02	Nat Genet	Genome-wide association study identifies two susceptibility loci for osteosarcoma.	Osteosarcoma	694 European ancestry cases, 2,703 European ancestry controls	247 European ancestry cases, 550 European ancestry controls	5q12.3	ADAMTS6	rs17206779-G	NR	5E-7		1.33	[1.19-1.47]	Illumina [698968]	N
1076	chr5	64448669	64448670	rs6885147	28044437	McDonald MN	2017-01-02	J Cachexia Sarcopenia Muscle	Body mass index change in gastrointestinal cancer and chronic obstructive pulmonary disease is associated with Dedicator of Cytokinesis 1.	Body mass index (change over time) in lung cancer or chronic obstructive pulmonary disease	112 lung cancer cases, 237 COPD cases	NA	5q12.3	ADAMTS	rs6885147-?		3E-6		0.086	[0.051-0.121] unit decrease	Affymetrix [418365]	N
1076	chr5	64450307	64450308	rs1423352	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	5q12.3		rs1423352-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1076	chr5	64451300	64451301	rs6449774	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	5q12.3	ADAMTS6	rs6449774-G	0.445682	8E-10		0.0114875	[0.0078-0.0152] unit decrease	NR [13737936] (imputed)	N
1076	chr5	64451300	64451301	rs6449774	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	5q12.3		rs6449774-?	NR	2E-9		0.012717	[0.0086-0.0168] unit decrease	Affymetrix [20259828] (imputed)	N
1076	chr5	64479527	64479528	rs7729945	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	5q12.3	NR	rs7729945-?	NR	9E-9				Affymetrix [~ 8270000] (imputed)	N
1076	chr5	64482524	64482525	rs7708235	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	5q12.3	NR	rs7708235-?	NR	5E-6		4.573	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1077	chr5	64512772	64512773	rs16893543	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	5q12.3	NR	rs16893543-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
1077	chr5	64518730	64518731	rs62369573	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	5q12.3	ADAMTS6	rs62369573-T	NR	3E-9		0.03678	[0.025-0.049] unit increase	Affymetrix [321114] (imputed)	N
1077	chr5	64518730	64518731	rs62369573	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	5q12.3	ADAMTS6	rs62369573-T	NR	4E-8		0.0339973	[0.022-0.046] unit increase	Affymetrix [321169] (imputed)	N
1077	chr5	64519319	64519320	rs7716507	33824429	Fjukstad KK	2021-04-06	Pharmacogenomics J	Genetic variants associated with cardiometabolic abnormalities during treatment with selective serotonin reuptake inhibitors: a genome-wide association study.	LDL levels x SSRI defined daily dose interaction in schizophrenia or bipolar disorder	1,180 European ancestry individuals	NA	5q12.3	ADAMTS6	rs7716507-G	NR	2E-9		0.424746	[0.29-0.56] unit increase	Illumina [NR] (imputed)	N
1077	chr5	64534640	64534641	rs13183791	20889312	Wang KS	2010-10-01	Schizophr Res	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	5q12.3	NR	rs13183791-?	NR	6E-6		1.5749	[NR]	Affymetrix [722112]	N
1077	chr5	64542364	64542365	rs7701134	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	5q12.3	ADAMTS6	rs7701134-G	NR	5E-8		0.0185039	[0.012-0.025] unit increase	Affymetrix [321114] (imputed)	N
1077	chr5	64545499	64545500	rs79303598	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Aspartate aminotransferase levels in low alcohol consumption	8,716 individuals	NA	5q12.3	NR	rs79303598-?	NR	1E-6		0.0958	[0.058-0.134] unit increase	Illumina [~ 7800000] (imputed)	N
1077	chr5	64548960	64548961	rs10471310	32528159	Choquet H	2020-06-11	Commun Biol	A multiethnic genome-wide analysis of 44,039 individuals identifies 41 new loci associated with central corneal thickness.	Central corneal thickness	32,292 European ancestry individuals, 9,623 East Asian ancestry individuals, 1,367 Hispanic/Latino individuals, 757 African American  individuals	NA	5q12.3	ADAMTS6	rs10471310-?	NA	5E-23		2.38	[1.91-2.85] unit decrease	Affymetrix [5541230] (imputed)	N
1077	chr5	64548960	64548961	rs10471310	29760442	Iglesias AI	2018-05-14	Nat Commun	Cross-ancestry genome-wide association analysis of corneal thickness strengthens link between complex and Mendelian eye diseases.	Central corneal thickness	17,803 European ancestry individuals, 8,107 Asian ancestry individuals	NA	5q12.3	ADAMTS6	rs10471310-T	0.38	6E-14		2.36	[1.75-2.97] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1077	chr5	64550320	64550321	rs12517876	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	5q12.3	ADAMTS6	rs12517876-A	0.69	5E-12		0.095	[0.068-0.122] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1077	chr5	64555614	64555615	rs55963623	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	5q12.3	NR	rs55963623-C	0.544159	3E-13		0.069571	[0.05-0.089] unit decrease	Affymetrix [21375087] (imputed)	N
1077	chr5	64568534	64568535	rs11747559	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	5q12.3	NR	rs11747559-?	NR	6E-13				Affymetrix [~ 8270000] (imputed)	N
1077	chr5	64590864	64590865	rs12516283	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	5q12.3	NR	rs12516283-?	NR	5E-10				Affymetrix [NR]	N
1077	chr5	64605752	64605753	rs66724425	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Intraocular pressure	133,492 European ancestry individuals	NA	5q12.3	ADAMTS6	rs66724425-?	NR	7E-11		0.0943	[0.066-0.123] unit decrease	Affymetrix, Illumina [up to 40000000] (imputed)	N
1077	chr5	64607482	64607483	rs6449781	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	5q12.3		rs6449781-C	0.49	2E-11		6.68	z score increase	Affymetrix [9061022] (imputed)	N
1077	chr5	64607613	64607614	rs10514979	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Central corneal thickness	16,204 European ancestry individuals	NA	5q12.3	ADAMTS6	rs10514979-C	0.122	4E-11		3.959	[2.78-5.14] ?m decrease	Affymetrix, Illumina [9249813] (imputed)	N
1077	chr5	64607885	64607886	rs78970464	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	5q12.3	ADAMTS6	rs78970464-T	NR	2E-9		0.0301242	[0.02-0.04] unit increase	Affymetrix [321114] (imputed)	N
1077	chr5	64607885	64607886	rs78970464	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	5q12.3	ADAMTS6	rs78970464-T	NR	2E-8		0.0283276	[0.019-0.038] unit increase	Affymetrix [321169] (imputed)	N
1078	chr5	64621399	64621400	rs7725575	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	5q12.3	ADAMTS6	rs7725575-G	0.515201422120765	6E-6	(G_Gemmiger_HB)	0.339622	[0.19-0.49] unit increase	Illumina [7711310] (imputed)	N
1078	chr5	64624605	64624605	rs58667010	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	5q12.3	ADAMTS6	rs58667010-TG	NR	2E-12		0.0258104	[0.019-0.033] unit increase	Affymetrix [321114] (imputed)	N
1078	chr5	64625511	64625512	rs2307121	23291589	Lu Y	2013-01-06	Nat Genet	Genome-wide association analyses identify multiple loci associated with central corneal thickness and keratoconus.	Corneal structure	13,057 European ancestry individuals, 2,538 Indian ancestry individuals, 2,542 Malay ancestry individuals, 1,883 Chinese ancestry individuals	NA	5q12.3	ADAMTS6	rs2307121-T	0.34	6E-11		0.09	[0.07-0.11] unit increase	Affymetrix, Illumina [~ 1000000] (imputed)	N
1078	chr5	64638338	64638339	rs10071507	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	5q12.3	ADAMTS6	rs10071507-T	0.6666	4E-21		0.14	[0.11-0.17] unit decrease	Affymetrix [~ 11900000] (imputed)	N
1078	chr5	64638878	64638879	rs4700079	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	5q12.3	ADAMTS6	rs4700079-T	NR	4E-9		0.0216629	[0.014-0.029] unit increase	Affymetrix [321169] (imputed)	N
1078	chr5	64638887	64638888	rs4700080	30801121	O'Donnell S	2019-02-25	Inflamm Bowel Dis	The Unsolved Link of Genetic Markers and Crohn's Disease Progression: A North American Cohort Experience.	Crohn's disease (time to progression)	662 European ancestry individuals	NA	5q12.3	NR	rs4700080-G	0.0340237	9E-6				Illumina [5378266] (imputed)	N
1078	chr5	64640911	64640912	rs2640717	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Central corneal thickness	16,204 European ancestry individuals	NA	5q12.3	ADAMTS6	rs2640717-A	0.378	6E-9	(conditional)	2.416	[1.6-3.23] ?m decrease	Affymetrix, Illumina [9249813] (imputed)	N
1078	chr5	64644870	64644871	rs16893717	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	5q12.3		rs16893717-T	NR	4E-31		0.039	[0.032-0.046] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1078	chr5	64644870	64644871	rs16893717	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	5q12.3		rs16893717-T	0.128642	4E-31		0.0390142	[0.032-0.046] unit decrease	Illumina [13479295] (imputed)	N
1078	chr5	64644870	64644871	rs16893717	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	5q12.3	ADAMTS6	rs16893717-?	NR	8E-35		0.058765862	[0.049-0.068] unit decrease	Illumina [27896057] (imputed)	N
1078	chr5	64652494	64652495	rs13436243	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	5q12.3	ADAMTS6	rs13436243-T	0.6661	5E-20		0.136	[0.11-0.17] unit decrease	Affymetrix [~ 11900000] (imputed)	N
1078	chr5	64667686	64667687	rs12018053	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	5q12.3		rs12018053-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1078	chr5	64671125	64671126	rs185206692	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs185206692-A	0.865061	3E-13		0.0942454	[0.068-0.12] increase	Affymetrix [11014269] (imputed)	N
1078	chr5	64671569	64671570	rs113391921	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs113391921-C	0.675815	1E-16		0.0769968	[0.058-0.096] decrease	Affymetrix [11014269] (imputed)	N
1078	chr5	64672715	64672716	rs72760562	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	5q12.3	ADAMTS6	rs72760562-?	NR	9E-20		0.044211566	[0.035-0.054] unit increase	Illumina [27896057] (imputed)	N
1078	chr5	64673914	64673915	rs11738854	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5q12.3		rs11738854-?	NR	1E-17				NR [~ 8900000] (imputed)	N
1078	chr5	64679282	64679283	rs6867518	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	5q12.3	NR	rs6867518-?	NR	6E-11				Affymetrix [~ 8270000] (imputed)	N
1078	chr5	64679282	64679283	rs6867518	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	5q12.3	NR	rs6867518-?	NR	9E-20				Affymetrix [~ 8270000] (imputed)	N
1078	chr5	64679282	64679283	rs6867518	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	5q12.3		rs6867518-?	NR	3E-11				NR [~ 8900000] (imputed)	N
1078	chr5	64686658	64686659	rs10064391	29760442	Iglesias AI	2018-05-14	Nat Commun	Cross-ancestry genome-wide association analysis of corneal thickness strengthens link between complex and Mendelian eye diseases.	Central corneal thickness	17,803 European ancestry individuals	NA	5q12.3	ADAMTS6	rs10064391-A	0.62	3E-12		2.765	[1.99-3.54] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1078	chr5	64690883	64690884	rs76622665	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Aspartate aminotransferase levels in low alcohol consumption	8,716 individuals	NA	5q12.3	NR	rs76622665-?	NR	5E-9		0.1594	[0.11-0.21] unit increase	Illumina [~ 7800000] (imputed)	N
1078	chr5	64692396	64692397	rs141056471	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	5q12.3	NR	rs141056471-?	NR	6E-6		4.525	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1078	chr5	64693484	64693485	rs62370702	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	5q12.3	ADAMTS6	rs62370702-T	NR	1E-8		0.0269434	[0.018-0.036] unit increase	Affymetrix [321114] (imputed)	N
1078	chr5	64699189	64699190	rs11960293	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	5q12.3	ADAMTS6	rs11960293-T	NR	1E-8		0.0235662	[0.015-0.032] unit increase	Affymetrix [321114] (imputed)	N
1079	chr5	64755603	64755604	rs143405544	27622933	Li QS	2016-09-13	Transl Psychiatry	Analysis of 23andMe antidepressant efficacy survey data: implication of circadian rhythm and neuroplasticity in bupropion response.	Non-response to bupropion and depression	1,861 European ancestry non-responder cases, 192,070 European ancestry healthy controls	NA	5q12.3	ADAMTS6	rs143405544-?		7E-7		6.711409	[2.44-18.52]	Illumina [~ 12000000] (imputed)	N
1079	chr5	64766797	64766798	rs61736454	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Height	458,235 European ancestry individuals	NA	5q12.3		rs61736454-?	NR	5E-24		0.150539	[0.12-0.18] unit decrease	NR [9800000] (imputed)	N
1079	chr5	64766797	64766798	rs61736454	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	5q12.3	NR	rs61736454-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
1079	chr5	64779256	64779257	rs34356419	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	5q12.3	NR	rs34356419-?	NR	2E-8				Illumina [7760689] (imputed)	N
1079	chr5	64791412	64791413	rs62368993	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	5q12.3	NR	rs62368993-?	NR	1E-10				Affymetrix [~ 8270000] (imputed)	N
1079	chr5	64835501	64835501	rs35532423	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	5q12.3	NR	rs35532423-?	NR	2E-8	(left ventral DC)			NR [9227495] (imputed)	N
1079	chr5	64838757	64838758	rs6891955	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling tense	371,318 European ancestry individuals	NA	5q12.3	ADAMTS6	rs6891955-C	0.354191	3E-9		5.96	z score increase	NR [10847151] (imputed)	N
1079	chr5	64845426	64845427	rs62369011	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	5q12.3	CENPK	rs62369011-T	0.338739290786586	1E-6		0.0027432	[NR] unit increase	Affymetrix [> 30000000] (imputed)	N
1079	chr5	64870305	64870306	rs113057113	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	5q12.3	ADAMTS6, CENPK, PPWD1, TRIM23, TRAPPC13, CTC-534A2.2, SGTB, NLN	rs113057113-?		2E-16				NR [7428630] (imputed)	N
1079	chr5	64874634	64874635	rs10940044	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs10940044-G	0.644652	9E-10		0.0606014	[0.042-0.079] decrease	Affymetrix [11014269] (imputed)	N
1080	chr5	64915684	64915685	rs183720171	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	5q12.3	NR	rs183720171-?	NR	2E-7		5.22	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1080	chr5	64956556	64956557	rs34925196	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Aspartate aminotransferase levels in low alcohol consumption	8,716 individuals	NA	5q12.3	NR	rs34925196-?	NR	2E-6		0.1442	[0.085-0.204] unit increase	Illumina [~ 7800000] (imputed)	N
1080	chr5	64962815	64962816	rs72764483	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (min-P)	26,502 European ancestry individuals	NA	5q12.3	PEAR1, LRRC71, ARHGEF11, ETV3L	rs72764483-?		4E-20				NR [7428630] (imputed)	N
1080	chr5	64962815	64962816	rs72764483	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	5q12.3	POU3F3	rs72764483-?		2E-19				NR [7428630] (imputed)	N
1080	chr5	64962815	64962816	rs72764483	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (min-P)	26,502 European ancestry individuals	NA	5q12.3	SDCCAG8, AKT3	rs72764483-?		8E-20				NR [7428630] (imputed)	N
1080	chr5	64976762	64976763	rs1978468	34006833	Elvsashagen T	2021-05-18	Nat Commun	The genetic architecture of the human thalamus and its overlap with ten common brain disorders.	Intralaminar thalamic nuclei volume	30,114 white British ancestry individuals			SGTB	rs1978468-A	0.2692	4E-10		0.058205	[0.04-0.076] unit increase	Affymetrix [8165723] (imputed)	N
1081	chr5	65015127	65015128	rs869640	31636452	Satizabal CL	2019-10-21	Nat Genet	Genetic architecture of subcortical brain structures in 38,851 individuals.	Brainstem volume	28,809 European ancestry individuals	341 South East and East Asian ancestry individuals, 85 African American individuals	5q12.3	NR	rs869640-A	0.7209	2E-16		8.245	NR z score decrease	Affymetrix, Illumina [NR] (imputed)	N
1081	chr5	65025408	65025409	rs149645408	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	5q12.3	NR	rs149645408-?	NR	4E-7		5.089	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1081	chr5	65091177	65091178	rs141162384	28247064	Deming Y	2017-02-28	Acta Neuropathol	Genome-wide association study identifies four novel loci associated with Alzheimer's endophenotypes and disease modifiers.	Cerebrospinal fluid AB1-42 levels	3,146 individuals	NA	5q12.3	NLN	rs141162384-T	0.038	6E-7		0.051	[0.031-0.071] unit increase	Illumina [7358575] (imputed)	N
1081	chr5	65093988	65093989	rs755927998	28604731	Hammerschlag AR	2017-06-12	Nat Genet	Genome-wide association analysis of insomnia complaints identifies risk genes and genetic overlap with psychiatric and metabolic traits.	Daytime nap	113,054 European ancestry cases and controls	NA	5q12.3	NR	rs755927998-T	0.0018	6E-9		0.32	[0.21-0.43] unit increase	Affymetrix [at least 12428592] (imputed)	N
1081	chr5	65100961	65100962	rs2262994	29273593	Duan L	2017-12-22	Stroke	Novel Susceptibility Loci for Moyamoya Disease Revealed by a Genome-Wide Association Study.	Moyamoya disease	755 Han Chinese ancestry cases, 2,031 Han Chinese ancestry controls	724 Han Chinese ancestry cases, 3,043 Han Chinese ancestry controls	5q12.3	NR	rs2262994-G	0.17	7E-7		1.31	[NR]	Illumina [747089]	N
1081	chr5	65107588	65107589	rs10940051	29071344	Zhou H	2017-10-25	JAMA Psychiatry	Genetic Risk Variants Associated With Comorbid Alcohol Dependence and Major Depression.	Major depression and alcohol dependence	3,041 African American individuals, 1,618 European ancestry individuals	1,612 African American individuals, 1,551 European ancestry individuals	5q12.3	intergenic	rs10940051-C	0.706	6E-6		0.366	[0.21-0.52] unit increase	Illumina [at least 5086170] (imputed)	N
1081	chr5	65124780	65124780	rs199653320	33852427	Wittekind DA	2021-04-01	Eur J Endocrinol	Genome-wide association and transcriptome analysis suggests total serum ghrelin to be linked with GFRAL.	ghrelin levels	1,501 individuals	NA	5q12.3	NLN	rs199653320-AC	NR	2E-7		0.4	[0.25-0.55] unit decrease	Affymetrix [9868623] (imputed)	N
1081	chr5	65126028	65126029	rs7711329	29855537	Hirata T	2018-05-31	Sci Rep	Japanese GWAS identifies variants for bust-size, dysmenorrhea, and menstrual fever that are eQTLs for relevant protein-coding or long non-coding RNAs.	Menstruation quality of life impact (acne)	1,115 Japanese ancestry female cases, 4,619 Japanese ancestry female controls	1,204 Japanese ancestry female cases, 4,410 Japanese ancestry female controls	5q12.3	NR	rs7711329-T	0.2395869	4E-6		0.18926059	[0.11-0.27] unit decrease	Affymetrix [536506]	N
1081	chr5	65137460	65137461	rs16894446	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	5q12.3	NR	rs16894446-T	0.026	3E-7	(Trans/cis-18:2, EA)	0.0167	[0.01-0.023] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1081	chr5	65139763	65139764	rs6892230	25367360	Li Q	2014-11-04	Hum Genet	Genome-wide association study for refractive astigmatism reveals genetic co-determination with spherical equivalent refractive error: the CREAM consortium.	Refractive astigmatism	8,487 European ancestry cases aged 25 years or older, 23,481 European ancestry controls aged 25 years or older, 907 European ancestry cases aged less than 25 years, 4,733 European ancestry controls aged less than 25 years, 3,076 Asian ancestry cases aged 25 years or older, 6,219 Asian ancestry controls aged 25 years or older, 247 Chinese ancestry cases aged less than 25 years, 670 Chinese ancestry controls aged less than 25 years	NA	5q12.3	NLN	rs6892230-A	0.016	2E-6		1.236	[1.133-1.349]	Affymetrix, Illumina [NR] (imputed)	N
1082	chr5	65171506	65171507	rs784463	30319691	Liu C	2018-09-24	Front Genet	Genome-Wide Association and Mechanistic Studies Indicate That Immune Response Contributes to Alzheimer's Disease Development.	Cerebrospinal fluid AB1-42 levels	235 early mild cognitive impairment cases, 249 late mild cognitive impairment cases, 47 Alzheimer's disease cases, 281 controls.	NA	5q12.3	Intergenic	rs784463-?		4E-6		186.4265	[NR] unit decrease	Illumina [575353]	N
1082	chr5	65174850	65174851	rs185133894	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Uterine fibroids	5,236 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	5q12.3	Intergenic	rs185133894-?		6E-6		1.44	[1.23-1.70]	Illumina [7645193] (imputed)	N
1082	chr5	65246115	65246116	rs142614863	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Logical memory (delayed recall) in mild cognitive impairment	581 European ancestry mild cognitive impairment cases	NA	5q12.3	ERBB2IP, NLN, SREK1	rs142614863-T	0.02	8E-7		0.82	[0.49-1.15] unit decrease	Illumina [7992243] (imputed)	N
1082	chr5	65255671	65255672	rs17247181	26908436	Siiskonen SJ	2016-02-12	Cancer Epidemiol Biomarkers Prev	A Genome-Wide Association Study of Cutaneous Squamous Cell Carcinoma among European Descendants.	Squamous cell carcinoma	745 European ancestry cases, 12,805 European ancestry controls	531 European ancestry cases, 551 European ancestry controls	5q12.3	ERBB2IP	rs17247181-T	0.1	4E-6		1.4	[1.21-1.62]	Affymetrix [2392512] (imputed)	N
1082	chr5	65264089	65264090	rs251295	34753499	Hanscombe KB	2021-11-09	Genome Med	The genetic case for cardiorespiratory fitness as a clinical vital sign and the routine prescription of physical activity in healthcare.	Cardiorespiratory fitness (vo2 max)	70,783 European ancestry individuals	NA	5q12.3		rs251295-A	0.59	2E-8		0.027	[0.017-0.037] unit decrease	Affymetrix [8918919] (imputed)	N
1083	chr5	65279111	65279112	rs6871057	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	5q12.3	NR	rs6871057-?	NR	6E-10				Affymetrix [NR]	N
1083	chr5	65307553	65307554	rs784275	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		ERBIN	rs784275-?	NR	4E-12	(female)	1.90561	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1083	chr5	65341823	65341824	rs16894786	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	5q12.3	NR	rs16894786-?	NR	4E-6				Affymetrix [NR]	N
1084	chr5	65411709	65411710	rs4700695	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 19)	2,187 European ancestry individuals	NA	5q12.3	NR	rs4700695-T	0.1557	5E-6		0.1935	[0.11-0.28] unit increase	Illumina [10677593] (imputed)	N
1084	chr5	65511149	65511150	rs150812543	29532581	Hallfors J	2018-03-13	Addict Biol	Genome-wide association study in Finnish twins highlights the connection between nicotine addiction and neurotrophin signaling pathway.	Nicotine withdrawal	540 Finnish ancestry cases and 1,163 Finnish ancestry controls from up to 739 families	NA	5q12.3	NR	rs150812543-C	0.010917	1E-6		0.3683864	[0.22-0.52] unit increase	Illumina [9469131] (imputed)	N
1085	chr5	65540328	65540329	rs735129	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	5q12.3	Intergenic	rs735129-?	NR	6E-6		1.598	[NR]	Affymetrix [492217] (imputed)	N
1085	chr5	65570606	65570607	rs6869446	33830993	Johnston KJA	2021-04-08	PLoS Genet	Sex-stratified genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	387,649 British ancestry individuals	NA	5q12.3	noU13, RP11-305P14.1	rs6869446-?	NR	3E-8			[NR]	NR [NR] (imputed)	N
1085	chr5	65570606	65570607	rs6869446	31194737	Johnston KJA	2019-06-13	PLoS Genet	Genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	387,649 British ancestry individuals	NA	5q12.3	RP11-305P14.1	rs6869446-T	0.3861	1E-8		0.0144	[0.0095-0.0193] unit decrease	NR [NR]	N
1085	chr5	65605704	65605705	rs76904051	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		AC113378.1	rs76904051-?	NR	4E-8	(male)	1.79209	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1085	chr5	65605704	65605705	rs76904051	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		AC113378.1	rs76904051-?	NR	2E-8		1.17139	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1085	chr5	65662132	65662133	rs3121685	35232999	Garcia-Etxebarria K	2022-03-01	Sci Rep	Local genetic variation of inflammatory bowel disease in Basque population and its effect in risk prediction.	Inflammatory bowel disease	498 European ancestry cases, 935 European ancestry controls	NA	5q12.3		rs3121685-C	0.532	4E-6		1.5		Illumina [5411567] (imputed)	N
1085	chr5	65662132	65662133	rs3121685	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	5q12.3	SREK1	rs3121685-T	0.4814	2E-9		0.1475	[0.099-0.196] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1086	chr5	65684429	65684430	rs577432066	32592749	Butler-Laporte G	2020-06-24	Clin Microbiol Infect	Elevated body-mass index is associated with an increased risk of infectious disease admissions and mortality: a mendelian randomization study.	Sepsis (28-day mortality)	210 European ancestry cases, 1,827 European ancestry controls	NA	5q12.3	AC010376.1	rs577432066-G	0.99	5E-9		0.26	[0.17-0.35] unit decrease	NR [NR]	N
1086	chr5	65739438	65739439	rs10514995	20031603	Marroni F	2009-08-01	Circ Cardiovasc Genet	A genome-wide association scan of RR and QT interval duration in 3 European genetically isolated populations: the EUROSPAN project.	RR interval (heart rate)	2,325 European ancestry individuals	NA	5q12.3	intergenic	rs10514995-G	0.36	1E-6		0.15	[0.09-0.21] unit increase	Illumina [~ 318327]	N
1086	chr5	65743705	65743706	rs542867945	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	5q12.3		rs542867945-A	0.9998192	4E-8		0.49	[0.32-0.66] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
1086	chr5	65761155	65761156	rs138432383	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 7, width of cartilaginous portion of nose)	2,187 European ancestry individuals	NA	5q12.3	NR	rs138432383-A	0.007565	4E-6		0.8068	[0.47-1.15] unit increase	Illumina [10677593] (imputed)	N
1087	chr5	65839258	65839259	rs11747514	31636452	Satizabal CL	2019-10-21	Nat Genet	Genetic architecture of subcortical brain structures in 38,851 individuals.	Nucleus accumbens volume	32,562 European ancestry individuals	341 South East and East Asian ancestry individuals, 85 African American individuals	5q12.3	NR	rs11747514-T	0.2232	1E-9		6.081	NR z score decrease	Affymetrix, Illumina [NR] (imputed)	N
1087	chr5	65851606	65851607	rs10042847	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure	35,269 European ancestry cases, 63,451 European ancestry controls	NA	5q12.3	NR	rs10042847-A	0.9335305	8E-6		1.0638298	[1.04-1.09]	Affymetrix [7791636] (imputed)	N
1087	chr5	65858017	65858018	rs4391125	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	5q12.3	Intergenic	rs4391125-?	NR	8E-6		1.476	[NR]	Affymetrix [492217] (imputed)	N
1087	chr5	65861569	65861570	rs12697036	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5q12.3	SFRS12	rs12697036-?	NR	4E-6	(sorbitol)	0.17786078	[0.1-0.25] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1087	chr5	65900818	65900819	rs7705086	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5q12.3	SFRS12	rs7705086-?	NR	7E-6	(cyclic adenosine monophosphate)	0.23915689	[0.13-0.34] unit increase	Affymetrix [at least 2500000] (imputed)	N
1087	chr5	65916783	65916784	rs10940072	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	5q12.3		rs10940072-A	NR	8E-23		0.0191	[0.015-0.023] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1087	chr5	65916783	65916784	rs10940072	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	5q12.3	MAST4	rs10940072-A	0.400198	9E-16		0.019358423	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1087	chr5	65916783	65916784	rs10940072	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	5q12.3	MAST4	rs10940072-A	0.400216	6E-24		0.023217125	[0.019-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1087	chr5	65916783	65916784	rs10940072	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q12.3	NR	rs10940072-A	0.441422	1E-37				Affymetrix, Illumina [24588908] (imputed)	N
1087	chr5	65916783	65916784	rs10940072	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	5q12.3	NR	rs10940072-A	0.400344	8E-37		0.023859	[0.02-0.028] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1087	chr5	65916783	65916784	rs10940072	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q12.3	NR	rs10940072-G	0.602051	1E-29				Affymetrix, Illumina [17210439] (imputed)	N
1087	chr5	65916783	65916784	rs10940072	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	5q12.3	NR	rs10940072-G	0.600129	4E-31		0.022893	[0.019-0.027] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
1087	chr5	65916783	65916784	rs10940072	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	5q12.3	MAST4	rs10940072-A	0.3989	1E-12		0.02674026	[0.019-0.034] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1087	chr5	65916783	65916784	rs10940072	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	5q12.3	MAST4	rs10940072-A	0.3989	7E-10		0.02294515	[0.016-0.03] unit increase	Affymetrix [~ 2500000] (imputed)	N
1088	chr5	65943398	65943399	rs13171616	34620984	Skuladottir AT	2021-10-07	Commun Biol	A genome-wide meta-analysis uncovers six sequence variants conferring risk of vertigo.	Vertigo	48,072 European ancestry cases, 894,541 European ancestry controls	NA	5q12.3		rs13171616-A	NR	3E-6		0.95791		Affymetrix, Illumina [62056310] (imputed)	N
1088	chr5	65959748	65959749	rs35468090	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		MAST4	rs35468090-?	NR	2E-10	(male)	3.61469	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1088	chr5	65964782	65964783	rs13190235	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	5q12.3		rs13190235-T	0.9036	6E-9		0.0138	[0.0091-0.0185] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1088	chr5	66000723	66000724	rs10940080	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	5q12.3	MAST4	rs10940080-A	0.640243	1E-12		0.016754108	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1088	chr5	66002787	66002788	rs4700160	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	5q12.3	Intergenic	rs4700160-A	0.3393	1E-9	(MTAG)	0.0106	[0.0073-0.0139] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1088	chr5	66002787	66002788	rs4700160	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	5q12.3	Intergenic	rs4700160-A	0.3304	3E-10	(MTAG)	0.0088	[0.0061-0.0115] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1088	chr5	66002787	66002788	rs4700160	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	5q12.3	Intergenic	rs4700160-A	0.3272	5E-8	(MTAG)	0.0133	[0.0086-0.018] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1088	chr5	66002787	66002788	rs4700160	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	5q12.3	NR	rs4700160-?	NR	4E-6		4.597	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1088	chr5	66012845	66012846	rs17278159	26584805	Dorajoo R	2015-11-19	Genes Nutr	A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.	Plasma omega-6 polyunsaturated fatty acid levels (linoleic acid)	717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls	NA	5q12.3	NR	rs17278159-T	0.1668	3E-6		0.0327	[0.019-0.046] unit decrease	Illumina [up to 1980188] (imputed)	N
1088	chr5	66020266	66020267	rs62360032	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Chronic lymphocytic leukemia	764 White British ancestry cases, 272,079 White British ancestry controls	NA	5q12.3		rs62360032-?	NR	9E-6		1.5747	[1.37-1.78]	NR [663083]	N
1088	chr5	66020456	66020457	rs58331610	29203360	Sanders MGH	2017-12-02	J Invest Dermatol	The genetics of seborrheic dermatitis: a candidate gene approach and pilot genome-wide association study.	Seborrheic dermatitis	609 European and unknown ancestry cases, 3441 European and unknown ancestry controls	NA	5q12.3	MAST4	rs58331610-?	NR	2E-8				Illumina [9008729] (imputed)	N
1088	chr5	66052386	66052387	rs114419215	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5q12.3	MAST4	rs114419215-C	0.973268	1E-8	(-52 ms)	0.0989238	[0.065-0.133] unit decrease	Affymetrix [10000000] (imputed)	N
1089	chr5	66084259	66084260	rs2289881	30818988	Klein M	2019-03-01	Am J Psychiatry	Genetic Markers of ADHD-Related Variations in Intracranial Volume.	Hippocampal volume	24,704 European ancestry individuals	NA	5q12.3	NR	rs2289881-T	NR	2E-7		5.245	NR z score decrease	NR [9145464] (imputed)	N
1089	chr5	66089534	66089535	rs6887024	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q12.3	NR	rs6887024-?		7E-9	(Cingulate gyrus)			NR [8955960] (imputed)	N
1089	chr5	66104104	66104105	rs17214309	32963231	Hofer E	2020-09-22	Nat Commun	Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.	Cortical surface area	18,617 European and African American ancestry individuals	22,363 European ancestry individuals	5q12.3	MAST4	rs17214309-?		4E-14	(Posterior cingulate)			Affymetrix, Illumina [NR] (imputed)	N
1089	chr5	66112714	66112715	rs57246240	30279459	van der Meer D	2018-10-02	Mol Psychiatry	Brain scans from 21,297 individuals reveal the genetic architecture of hippocampal subfield volumes.	Total hippocampal volume	21,297 European ancestry individuals	NA	5q12.3	MAST4	rs57246240-A	NR	9E-11		36.63	NR mm3 increase	Affymetrix, Illumina [NR] (imputed)	N
1089	chr5	66112714	66112715	rs57246240	30279459	van der Meer D	2018-10-02	Mol Psychiatry	Brain scans from 21,297 individuals reveal the genetic architecture of hippocampal subfield volumes.	Hippocampal tail volume	21,297 European ancestry individuals	NA	5q12.3	MAST4	rs57246240-A	NR	1E-10		8.35	NR mm3 increase	Affymetrix, Illumina [NR] (imputed)	N
1089	chr5	66121089	66121097	rs555025179	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	5q12.3	MAST4	rs555025179-G	0.459401	6E-9		0.0139770135	[0.0093-0.0187] unit decrease	Affymetrix [93095623] (imputed)	N
1089	chr5	66121089	66121097	rs555025179	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	Endometrioid ovarian cancer	2,810 European ancestry cases, 40,941 European ancestry controls	NA	5q12.3	NR	rs555025179-GACAC	0.531475	5E-8		1.18	[1.11364451527015-1.25657782750532]	Illumina [11595112] (imputed)	N
1089	chr5	66131911	66131912	rs9918110	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	5q12.3	SH3RF3	rs9918110-?		7E-11				NR [7428630] (imputed)	N
1089	chr5	66142372	66142373	rs12109247	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	5q12.3	MAST4	rs12109247-?		1E-10				NR [7428630] (imputed)	N
1089	chr5	66144112	66144113	rs12110247	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical thickness	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	5q12.3	NR	rs12110247-A	0.363	2E-7	(Posterior Cingulate)	0.003619041	[0.0022-0.005] unit decrease	Affymetrix, Illumina [NR]	N
1089	chr5	66148983	66148984	rs1007500	26584805	Dorajoo R	2015-11-19	Genes Nutr	A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.	Plasma omega-6 polyunsaturated fatty acid levels (dihomo-gamma-linolenic acid)	717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls	NA	5q12.3	NR	rs1007500-T	0.9803	9E-6		0.2136	[0.12-0.31] unit increase	Illumina [up to 1980188] (imputed)	N
1089	chr5	66148983	66148984	rs1007500	26584805	Dorajoo R	2015-11-19	Genes Nutr	A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.	Delta-6 desaturase activity	717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls	NA	5q12.3	NR	rs1007500-T	0.9837	7E-6		0.2539	[0.14-0.36] unit increase	Illumina [up to 1980188] (imputed)	N
1089	chr5	66152257	66152258	rs39861	22949513	EPICURE Consortium	2012-09-04	Hum Mol Genet	Genome-wide association analysis of genetic generalized epilepsies implicates susceptibility loci at 1q43, 2p16.1, 2q22.3 and 17q21.32.	Generalized epilepsy	702 European ancestry genetic absence epilepsies cases, 586 European ancestry juvenile myoclonic epilepsy cases, 239 European ancestry other genetic generalized epilepsies cases, 2,461 European ancestry controls	347 European ancestry genetic absence epilepsies trios, 166 European ancestry juvenile myoclonic epilepsy trios, 91 European ancestry other genetic generalized epilepsies trios, 385 European ancestry genetic absence epilepsies cases, 382 European ancestry juvenile myoclonic epilepsy cases, 122 European ancestry other genetic generalized epilepsies cases, up to 889 European ancestry controls	5q12.3	MAST4	rs39861-C	.235	3E-7	(JME)	1.26	[1.13-1.41]	Affymetrix [4560000] (imputed)	N
1089	chr5	66153523	66153524	rs72761269	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mode of anisotropy)	17,706 European ancestry individuals	NA	5q12.3	NR	rs72761269-?		7E-11	(Cingulate gyrus)			NR [8955960] (imputed)	N
1089	chr5	66155019	66155020	rs72761270	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	5q12.3	NR	rs72761270-T	0.343	3E-13	(Posterior Cingulate)	5.6483502	[4.13-7.16] unit increase	Affymetrix, Illumina [NR]	N
1089	chr5	66160021	66160022	rs1972739	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	5q12.3		rs1972739-G	0.48	7E-10		6.16	z score increase	Affymetrix [9061022] (imputed)	N
1089	chr5	66170531	66170532	rs16895768	27723758	Bronson PG	2016-10-10	Nat Genet	Common variants at PVT1, ATG13-AMBRA1, AHI1 and CLEC16A are associated with selective IgA deficiency.	Selective IgA deficiency	1,635 European ancestry cases, 4,852 European ancestry controls	NA	5q12.3	MAST4	rs16895768-C		2E-6		0.77	[NR]	Illumina [up to 9464381] (imputed)	N
1089	chr5	66175681	66175682	rs25832	26604143	Felix JF	2015-11-24	Hum Mol Genet	Genome-wide association analysis identifies three new susceptibility loci for childhood body mass index.	Childhood body mass index	34,744 European ancestry children	11,313 European ancestry children	5q12.3	LOC375449	rs25832-A	0.71	2E-6		0.039	[0.023-0.055] unit increase	Affymetrix, Illumina [2499691] (imputed)	N
1089	chr5	66185150	66185151	rs39862	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	5q12.3	MAST4	rs39862-T	0.717446	8E-14		0.0116464	[0.0086-0.0147] unit increase	Affymetrix [12370749]	N
1089	chr5	66185150	66185151	rs39862	31271701	Thibord F	2019-07-04	J Thromb Haemost	A Genome Wide Association Study on plasma FV levels identified PLXDC2 as a new modifier of the coagulation process.	Plasma factor V levels in venous thrombosis (conditioned on rs6027)	510 European ancestry individuals	1,156 European ancestry individuals	5q12.3	MAST4	rs39862-?	NR	5E-6		0.066	[0.039-0.093] unit increase	NR [6264382] (imputed)	N
1090	chr5	66200782	66200783	rs249612	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	5q12.3	NR	rs249612-?	NR	4E-12				Affymetrix [~ 8270000] (imputed)	N
1090	chr5	66200782	66200783	rs249612	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	5q12.3		rs249612-?	NR	4E-11				NR [~ 8900000] (imputed)	N
1090	chr5	66200782	66200783	rs249612	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	5q12.3	NA	rs249612-T	0.7138	5E-13		0.0153	[0.011-0.019] unit increase	NR [~ 27400000] (imputed)	N
1090	chr5	66200782	66200783	rs249612	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	5q12.3	NA	rs249612-T	0.7138	5E-13		0.0153	[0.011-0.019] unit increase	NR [~ 27400000] (imputed)	N
1090	chr5	66207260	66207261	rs27218	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	5q12.3		rs27218-C	NR	1E-10		0.0113	[0.0078-0.0148] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1090	chr5	66219317	66219318	rs27215	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		5q12.3	MAST4	rs27215-C	0.274935	5E-11		0.0102695	[0.0072-0.0133] unit decrease	Affymetrix [12370749]	N
1090	chr5	66222392	66222392	rs201997403	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-1-beta levels	3,309 Finnish ancestry individuals	NA	5q12.3	NR	rs201997403-C	NR	6E-6		0.1469	[0.075-0.218] SD units decrease	NR [10700000] (imputed)	N
1090	chr5	66283519	66283520	rs9283706	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	5q12.3	MAST4	rs9283706-C	0.7519	2E-7		0.0345	[0.022-0.047] unit increase	NR [8041861] (imputed)	N
1090	chr5	66286148	66286149	rs146002062	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	5q12.3	MAST4	rs146002062-G	0.991	1E-6	(AA)	0.12	unit increase	Illumina [NR] (imputed)	N
1090	chr5	66291369	66291370	rs4286632	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	5q12.3	MAST4	rs4286632-A	0.7299	9E-14		0.127	[0.094-0.16] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1090	chr5	66295154	66295155	rs40087	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	5q12.3	MAST4	rs40087-A	0.448	2E-8		0.0113946	[0.0074-0.0154] unit increase	Affymetrix [up to 18485882] (imputed)	N
1090	chr5	66295154	66295155	rs40087	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	5q12.3		rs40087-?	NR	6E-14				NR [~ 8900000] (imputed)	N
1090	chr5	66304224	66304225	rs34699	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	5q12.3	NR	rs34699-T	0.5804	3E-8		0.01	[0.0065-0.0135] unit decrease	NR [~ 27400000] (imputed)	N
1090	chr5	66304224	66304225	rs34699	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	5q12.3	NA	rs34699-T	0.5808	4E-11		0.0118	[0.0083-0.0153] unit decrease	NR [~ 27400000] (imputed)	N
1090	chr5	66304224	66304225	rs34699	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	5q12.3	NR	rs34699-T	0.5808	4E-11		0.0118	[0.0083-0.0153] unit decrease	NR [~ 27400000] (imputed)	N
1090	chr5	66305437	66305438	rs10055631	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	5q12.3	LOC101928794, MAST4	rs10055631-A	0.739	2E-6		0.035	[0.021-0.049] unit increase	Affymetrix [7947838] (imputed)	N
1090	chr5	66311338	66311339	rs1159201	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	5q12.3	MAST4	rs1159201-A	0.7406	3E-12		0.2092	[0.15-0.27] mmHg increase	Affymetrix [NR] (imputed)	N
1091	chr5	66327006	66327007	rs40602	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q12.3	NR	rs40602-A	0.59438	3E-16				Affymetrix, Illumina [22063850] (imputed)	N
1091	chr5	66328308	66328309	rs1991492	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	5q12.3	Intergenic	rs1991492-A	0.7473	3E-8	(MTAG)	0.0106	[0.0069-0.0143] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1091	chr5	66333698	66333698	rs11384871	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	5q12.3	MAST4	rs11384871-AT	0.405112	5E-14		0.016914302	[0.013-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1091	chr5	66334501	66334502	rs71626484	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	5q12.3		rs71626484-?	NR	8E-9				NR [~ 8900000] (imputed)	N
1091	chr5	66347989	66347990	rs469394	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	5q12.3	NR	rs469394-T	0.592758	1E-17		0.01638	[0.013-0.02] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
1091	chr5	66353321	66353322	rs7717020	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	5q12.3	Intergenic	rs7717020-A	0.7593	6E-9	(MTAG)	0.0156	[0.01-0.021] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1091	chr5	66356631	66356632	rs10052424	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	5q12.3	Intergenic	rs10052424-A	0.2369	1E-8	(MTAG)	0.0088	[0.0059-0.0117] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1091	chr5	66373883	66373884	rs189845032	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	5q12.3	MAST4	rs189845032-A	0.997	4E-6	(AA)	0.76	NR unit increase	Illumina [NR] (imputed)	N
1091	chr5	66408626	66408627	rs74495954	32157568	Strupp M	2020-03-10	Cerebellum	A Variation in FGF14 Is Associated with Downbeat Nystagmus in a Genome-Wide Association Study.	Idiopathic downbeat nystagmus	106 European ancestry cases, 2,609 European ancestry controls	NA	5q12.3	MAST4	rs74495954-C	0.015	7E-6		6.666666	[2.94-16.67]	Illumina [7759885] (imputed)	N
1091	chr5	66452174	66452175	rs1697137	20009918	Shrestha S	2010-01-01	AIDS	A genome-wide association study of carotid atherosclerosis in HIV-infected men.	Carotid atherosclerosis in HIV infection	177 European ancestry individuals	NA	5q12.3	MAST4	rs1697137-C	0.36	2E-6	(internal cIMT)			Illumina [311194]	N
1092	chr5	66459842	66459843	rs200132752	34011352	Schwarm C	2021-05-19	Orphanet J Rare Dis	Identification of two novel bullous pemphigoid- associated alleles, HLA-DQA1*05:05 and -DRB1*07:01, in Germans.	Bullous pemphigoid	438 German cases, 417 German controls	NA	5q12.3	MAST4	rs200132752-?	NR	4E-38		2.82487	[2.4-3.25] unit decrease	Affymetrix [up to 386296] (imputed)	N
1092	chr5	66500841	66500842	rs1428472	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	5q12.3	CD180	rs1428472-A	NR	5E-8		5.464	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1092	chr5	66511534	66511535	rs1697139	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	5q12.3	NR	rs1697139-G	0.5355	9E-6	(EA)	0.028	[0.016-0.04] unit decrease	Illumina [~ 11800000] (imputed)	N
1092	chr5	66511786	66511787	rs1697138	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	5q12.3	NR	rs1697138-C	0.3863	2E-8				NR [9056863] (imputed)	N
1092	chr5	66519157	66519158	rs115559601	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	5q12.3	Intergenic	rs115559601-T	0.993	2E-6	(AA)	0.102	unit increase	Illumina [NR] (imputed)	N
1092	chr5	66526208	66526209	rs9291879	27723756	Wang J	2016-10-10	Nat Genet	Genome-wide association analysis identifies variation in vitamin D receptor and other host factors influencing the gut microbiota.	Gut microbiota (bacterial taxa)	1,812 European ancestry individuals	NA	5q12.3	CD180	rs9291879-C	NR	4E-9	(Unclassified Porphyromonadaceae)	0.58	unit decrease	Affymetrix, Illumina [6344846] (imputed)	N
1092	chr5	66543278	66543279	rs73112098	29206233	Shendre A	2017-12-04	PLoS One	Genome-wide admixture and association study of subclinical atherosclerosis in the Women's Interagency HIV Study (WIHS).	Common carotid intima-media thickness in HIV infection	682 Black non-Hispanic HIV-positive women	NA	5q12.3	CD180, LOC101928858	rs73112098-G	NR	1E-6		0.0222	[NR] unit increase	Illumina [1124301]	N
1093	chr5	66697638	66697639	rs32015	29860282	Scelsi MA	2018-05-30	Brain	Genetic study of multimodal imaging Alzheimer's disease progression score implicates novel loci.	Cortical amyloid beta load	936 European ancestry individuals	NA	5q13.1	Intergenic	rs32015-?		3E-6	(corrected for APOE4 status)	0.13	[NR] unit decrease	Illumina [5137218] (imputed)	N
1094	chr5	66720793	66720797	rs146507619	34162658	Quinn MC	2021-06-23	Cancer Epidemiol Biomarkers Prev	Identification of a locus near ULK1 associated with progression-free survival in ovarian cancer.	Progression free survival in epithelial ovarian cancer	5,596 European ancestry individuals	NA	5q13.1	NR	rs146507619-A		8E-6		0.2101	[0.12-0.3] unit increase	Illumina [12770451] (imputed)	N
1094	chr5	66728457	66728458	rs10078793	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Rhodococcus abundance in stool	5,959 Finnish ancestry individuals	NA	5q13.1		rs10078793-T	0.150077	2E-8		0.0280316	[0.018-0.038] unit decrease	Illumina [7980478] (imputed)	N
1094	chr5	66728457	66728458	rs10078793	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Jiangellaceae abundance in stool	5,959 Finnish ancestry individuals	NA	5q13.1		rs10078793-T	0.150077	3E-7		0.0334137	[0.021-0.046] unit decrease	Illumina [7980478] (imputed)	N
1096	chr5	66979249	66979250	rs6449898	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	5q13.1	NR	rs6449898-T	0.3027	2E-6	(EA)	0.033	[0.019-0.047] unit increase	Illumina [~ 11800000] (imputed)	N
1096	chr5	66986379	66986380	rs59911132	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	5q13.1		rs59911132-?	NR	9E-9				Affymetrix [NR] (imputed)	N
1096	chr5	66987307	66987307	rs565365823	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	5q13.1		rs565365823-?	NR	4E-8				Affymetrix [NR] (imputed)	N
1096	chr5	66996303	66996304	rs4976023	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5q13.1		rs4976023-?	NR	1E-12				NR [~ 8900000] (imputed)	N
1096	chr5	67016767	67016768	rs12517727	32152699	Nudel R	2020-03-09	Hum Genet	A large population-based investigation into the genetics of susceptibility to gastrointestinal infections and the link between gastrointestinal infections and mental illness.	Gastrointestinal infection	7,197 Danish ancestry cases, 37,062 Danish ancestry controls	NA	5q13.1	NR	rs12517727-A	NR	4E-6		1.1574	[1.1-1.22]	Illumina [11600722] (imputed)	N
1096	chr5	67099306	67099307	rs11743474	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in diabetes mellitus	153 Korean ancestry cases, 5,161 Korean ancestry controls	NA	5q13.1		rs11743474-C	0.09698	4E-6		2.083	[1.528-2.841]	Affymetrix [7975321] (imputed)	N
1096	chr5	67099306	67099307	rs11743474	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	5q13.1	LOC101928858	rs11743474-A	0.844049	5E-12		0.0176093	[0.013-0.023] unit increase	NR [13737936] (imputed)	N
1096	chr5	67100401	67100402	rs16896999	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5q13.1		rs16896999-?	NR	3E-21				NR [~ 8900000] (imputed)	N
1096	chr5	67100579	67100580	rs11744543	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	5q13.1		rs11744543-?	NR	2E-13				NR [~ 8900000] (imputed)	N
1096	chr5	67104333	67104334	rs7378773	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	5q13.1		rs7378773-?	NR	4E-9		0.0139554	[0.0094-0.0185] unit increase	Affymetrix [20259828] (imputed)	N
1097	chr5	67114603	67114604	rs9716726	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	10,737 African American or Afro-Caribbean and African ancestry individuals	NA	5q13.1	NR	rs9716726-G	0.153477	2E-9		0.129709	[0.088-0.172] SD units increase	Affymetrix, Illumina [36042313] (imputed)	N
1097	chr5	67193450	67193451	rs35558461	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	5q13.1		rs35558461-?	NR	2E-20				NR [~ 8900000] (imputed)	N
1097	chr5	67193450	67193451	rs35558461	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		5q13.1	NR	rs35558461-A	NR	4E-8		0.0394572	NR unit increase	NR [NR] (imputed)	N
1097	chr5	67194468	67194469	rs10940138	23599027	Demerath EW	2013-04-17	Hum Mol Genet	Genome-wide association study of age at menarche in African-American women.	Menarche (age at onset)	18,089 African American individuals	2,850 African American individuals, 87,802 European ancestry inidividuals	5q13.1	PIK3R1	rs10940138-T	0.19	4E-7	(AA)	5.64	[3.46-7.82] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1097	chr5	67207956	67207957	rs78935958	26911590	Mullin BH	2016-02-25	BMC Genomics	Genome-wide association study using family-based cohorts identifies the WLS and CCDC170/ESR1 loci as associated with bone mineral density.	Bone mineral density (hip)	1,042 Northern European ancestry individuals	5,654 Northern European ancestry individuals	5q13.1	LOC101928858, PIK3R1	rs78935958-G	0.06	2E-7		0.26	[0.16-0.36] g/cm2 decrease	Illumina [NR] (imputed)	N
1097	chr5	67220934	67220935	rs4976137	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	5q13.1		rs4976137-G	NR	1E-9		0.0134	[0.0091-0.0177] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1097	chr5	67227293	67227294	rs62369630	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	5q13.1	NR	rs62369630-T	0.687379	2E-12		0.014638	[0.011-0.019] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1097	chr5	67227294	67227295	rs62369631	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q13.1	NR	rs62369631-G	0.725891	4E-11				Affymetrix, Illumina [24588908] (imputed)	N
1098	chr5	67256371	67256371	rs386404029	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	5q13.1		rs386404029-CAA	0.653145	4E-13		0.017302401	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1098	chr5	67256371	67256371	rs386404029	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	5q13.1		rs386404029-CAA	0.653131	3E-9		0.014137051	[0.0095-0.0188] unit decrease	Affymetrix [93095623] (imputed)	N
1098	chr5	67267820	67267821	rs72770776	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	5q13.1	NR	rs72770776-T	0.226362	6E-25		0.0378646	[0.031-0.045] unit increase	NR [19129689] (imputed)	N
1098	chr5	67290732	67290733	rs4976028	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		5q13.1	NR	rs4976028-G	NR	4E-11		0.047357	NR unit decrease	NR [NR] (imputed)	N
1098	chr5	67294906	67294907	rs157411	25866641	Xu W	2015-03-19	Biomark Res	A genome wide association study on Newfoundland colorectal cancer patients' survival outcomes.	Survival in rectal cancer	171 European ancestry cases	NA	5q13.1	intergenic	rs157411-?		2E-6	(overall survival)	2.89	[1.86-4.47]	Illumina [729737]	N
1098	chr5	67300047	67300050	rs201382402	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	5q13.1	intergenic	rs201382402-A	NR	8E-6	(AA)			Illumina [up to 11995908] (imputed)	N
1098	chr5	67300047	67300050	rs201382402	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	5q13.1	intergenic	rs201382402-A	NR	8E-6				Illumina [up to 11995908] (imputed)	N
1098	chr5	67307461	67307462	rs10067755	23192594	Velez Edwards DR	2012-11-29	Hum Genet	Gene-environment interactions and obesity traits among postmenopausal African-American and Hispanic women in the Women's Health Initiative SHARe Study.	Waist-to-hip circumference ratio (smoking years interaction)	8,203 African American females, 3,484 Hispanic females	NA	5q13.1	LOC359819, EE F1B3	rs10067755-C	NR	2E-6		0.12	[NR] unit decrease	Affymetrix [706791]	N
1098	chr5	67315924	67315925	rs282302	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	5q13.1	intergenic	rs282302-A	0.0902	7E-14		0.0252	[0.019-0.032] unit increase	Affymetrix [18391927] (imputed)	N
1098	chr5	67323877	67323878	rs467093	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5q13.1		rs467093-?	NR	3E-23				NR [~ 8900000] (imputed)	N
1098	chr5	67353322	67353323	rs964279	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	5q13.1	NR	rs964279-?	NR	5E-17				Affymetrix [NR]	N
1099	chr5	67404647	67404648	rs76718060	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	5q13.1	NR	rs76718060-?	NR	5E-6		0.0077685	[0.0044-0.0111] unit decrease	Affymetrix [805426] (imputed)	N
1099	chr5	67424121	67424121	rs138044103	32424353	Zhang H	2020-05-18	Nat Genet	Genome-wide association study identifies 32 novel breast cancer susceptibility loci from overall and subtype-specific analyses.	Invasive breast cancer	106,278 European ancestry cases, 91,477 European ancestry controls	NA	5q13.1	NR	rs138044103-?	NR	2E-9	(mixed effect)			Illumina [~ 9700000] (imputed)	N
1099	chr5	67482086	67482087	rs62357315	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	5q13.1	RP11-404L6.2	rs62357315-A	0.2609	8E-6		0.035	[0.02-0.05] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1099	chr5	67483731	67483732	rs6449957	28054174	Leslie EJ	2017-01-04	Hum Genet	Genome-wide meta-analyses of nonsyndromic orofacial clefts identify novel associations between FOXE1 and all orofacial clefts, and TP63 and cleft lip with or without cleft palate.	Cleft lip with or without cleft palate	83 Asian ancestry cases, 1,173 Asian ancestry case-parent trios, 161 Asian ancestry controls,170 European ancestry cases, 988 European ancestry case-parent trios, 835 European ancestry controls, 570 Latino or African cases, 629 Latino or African case-parent trios, 704 Latino or African controls, 21 case-parent trios.	NA	5q13.1	PIK3R1	rs6449957-?	NR	2E-7		1.1764705	[1.05-1.32] (GENEVA cohort)	Illumina [6090031] (imputed)	N
1099	chr5	67492111	67492112	rs4246774	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	5q13.1	NR	rs4246774-C	NR	9E-6		1.2345679	[NR]	Illumina [7158791] (imputed)	N
1099	chr5	67500663	67500664	rs188276406	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	5q13.1	PIK3R1	rs188276406-T	NR	7E-6		0.568096	[0.32-0.82] unit decrease	Illumina [at least 950000] (imputed)	N
1100	chr5	67503532	67503533	rs6889157	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	5q13.1		rs6889157-A	0.451123	3E-15		0.01757666	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1100	chr5	67509800	67509801	rs251398	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	5q13.1		rs251398-C	NR	1E-11		0.0146	[0.01-0.019] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
1100	chr5	67509800	67509801	rs251398	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q13.1	NR	rs251398-C	0.488167	3E-17				Affymetrix, Illumina [23472807] (imputed)	N
1100	chr5	67509800	67509801	rs251398	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	5q13.1	NR	rs251398-C	0.446922	2E-19		0.017302	[0.014-0.021] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1100	chr5	67513456	67513457	rs13186403	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	5q13.1		rs13186403-G	0.784747	3E-8		0.0268885	[0.017-0.036] unit increase	NR [11722792] (imputed)	N
1100	chr5	67513456	67513457	rs13186403	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small HDL	115,082 European ancestry individuals	NA	5q13.1		rs13186403-G	0.784743	2E-8		0.028136	[0.018-0.038] unit increase	NR [11722792] (imputed)	N
1100	chr5	67513456	67513457	rs13186403	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of monounsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	5q13.1		rs13186403-G	0.784724	2E-8		0.027887	[0.018-0.038] unit increase	NR [11722792] (imputed)	N
1100	chr5	67513456	67513457	rs13186403	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large VLDL	115,082 European ancestry individuals	NA	5q13.1		rs13186403-G	0.784743	4E-8		0.0271846	[0.017-0.037] unit increase	NR [11722792] (imputed)	N
1100	chr5	67513456	67513457	rs13186403	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	5q13.1		rs13186403-G	0.784743	1E-8		0.02818	[0.018-0.038] unit increase	NR [11722792] (imputed)	N
1100	chr5	67564382	67564383	rs34309	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	5q13.1		rs34309-A	0.3816	3E-8		0.008	[0.0053-0.0107] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1100	chr5	67564382	67564383	rs34309	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	5q13.1	Intergenic	rs34309-A	0.3816	1E-8	(MTAG)	0.0077	[0.0052-0.0102] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1100	chr5	67569601	67569602	rs2302976	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	5q13.1		rs2302976-?	NR	5E-28				NR [~ 8900000] (imputed)	N
1100	chr5	67579477	67579478	rs115911679	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	5q13.1	PIK3R1	rs115911679-T	0.0187270000000001	3E-9		0.048979428	[0.033-0.065] unit increase	Affymetrix [93095623] (imputed)	N
1100	chr5	67584757	67584758	rs1862162	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	5q13.1	PIK3R1	rs1862162-G	0.261785	2E-25		0.02683268	[0.022-0.032] unit increase	Affymetrix [93095623] (imputed)	N
1100	chr5	67585142	67585143	rs34287	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	5q13.1	PIK3R1	rs34287-A	0.341	1E-20		0.0187	[0.015-0.023] unit increase	Affymetrix [18391927] (imputed)	N
1100	chr5	67585142	67585143	rs34287	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	5q13.1	NR	rs34287-?	NR	7E-6	(male)	0.16565	[0.093-0.238] unit increase	Affymetrix [7794483] (imputed)	N
1100	chr5	67585142	67585143	rs34287	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	5q13.1	NR	rs34287-?	NR	6E-10		0.14482	[0.099-0.191] unit increase	Affymetrix [7794483] (imputed)	N
1100	chr5	67585142	67585143	rs34287	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	5q13.1	NR	rs34287-?	NR	2E-6	(female)	0.1211	[0.071-0.171] unit increase	Affymetrix [7794483] (imputed)	N
1100	chr5	67585722	67585723	rs28365970	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	5q13.1		rs28365970-A	NR	8E-16		0.0194	[0.015-0.024] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
1100	chr5	67585722	67585723	rs28365970	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	5q13.1	PIK3R1	rs28365970-A	NR	7E-9		0.0187607	[0.012-0.025] unit decrease	Affymetrix [321114] (imputed)	N
1100	chr5	67585722	67585723	rs28365970	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	5q13.1	PIK3R1	rs28365970-A	0.261224	1E-24		0.0261016	[0.021-0.031] unit increase	Affymetrix [93095623] (imputed)	N
1100	chr5	67585722	67585723	rs28365970	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	5q13.1	PIK3R1	rs28365970-C	0.739825	6E-6		0.016258	[0.0092-0.0233] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
1100	chr5	67585722	67585723	rs28365970	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	5q13.1	PIK3R1	rs28365970-C	0.741475	2E-11		0.019868	[0.014-0.026] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1100	chr5	67587999	67588000	rs3730088	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	5q13.1		rs3730088-G	0.147261	4E-14		0.0215335	[0.016-0.027] unit decrease	Illumina [13479295] (imputed)	N
1100	chr5	67587999	67588000	rs3730088	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	5q13.1	PIK3R1	rs3730088-?	NR	8E-18		0.03472191	[0.027-0.043] unit decrease	Illumina [27896057] (imputed)	N
1100	chr5	67593015	67593016	rs1445760	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	5q13.1		rs1445760-C	NR	3E-25		0.0134	[0.011-0.016] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1100	chr5	67593015	67593016	rs1445760	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	5q13.1	PIK3R1	rs1445760-C	0.5395	2E-15		0.02820863	[0.021-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
1100	chr5	67596087	67596088	rs3756668	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	5q13.1		rs3756668-A	NR	2E-21		0.0157	[0.012-0.019] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1100	chr5	67596087	67596088	rs3756668	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	5q13.1	PIK3R1	rs3756668-A	0.459518	5E-22		0.021568498	[0.017-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1100	chr5	67596087	67596088	rs3756668	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	5q13.1	PIK3R1	rs3756668-A	0.459466	7E-26		0.02331412	[0.019-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1100	chr5	67596087	67596088	rs3756668	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q13.1	NR	rs3756668-G	0.532009	2E-26				Affymetrix, Illumina [22063850] (imputed)	N
1100	chr5	67596087	67596088	rs3756668	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	5q13.1	NR	rs3756668-G	0.542816	3E-28		0.020823	[0.017-0.025] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
1100	chr5	67596087	67596088	rs3756668	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	5q13.1	NR	rs3756668-A	0.456697	1E-38		0.023731	[0.02-0.027] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
1100	chr5	67596087	67596088	rs3756668	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	5q13.1	NR	rs3756668-A	0.457909	7E-36		0.024243	[0.02-0.028] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
1100	chr5	67596087	67596088	rs3756668	31097437	Plotnikov D	2019-05-16	Br J Ophthalmol	Association between birth weight and refractive error in adulthood: a Mendelian randomisation study.	Birth weight	188,039 European ancestry individuals	NA	5q13.1	NR	rs3756668-A	0.47	8E-11		0.021	[0.015-0.027] z score decrease	Affymetrix [up to 10400000] (imputed)	N
1100	chr5	67596087	67596088	rs3756668	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	5q13.1		rs3756668-?	NR	1E-27				NR [~ 8900000] (imputed)	N
1100	chr5	67596087	67596088	rs3756668	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	5q13.1	PIK3R1	rs3756668-A	0.4593	4E-17		0.02984507	[0.023-0.037] unit increase	Affymetrix [~ 2500000] (imputed)	N
1100	chr5	67597320	67597321	rs9623	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	5q13.1		rs9623-C	NR	3E-19		0.0213	[0.017-0.026] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
1100	chr5	67597320	67597321	rs9623	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q13.1	NR	rs9623-C	0.454241	2E-35				Affymetrix, Illumina [24246363] (imputed)	N
1100	chr5	67597320	67597321	rs9623	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q13.1	NR	rs9623-C	0.453954	2E-33				Affymetrix, Illumina [20825802] (imputed)	N
1100	chr5	67597320	67597321	rs9623	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5q13.1		rs9623-?	NR	6E-30				NR [~ 8900000] (imputed)	N
1100	chr5	67597320	67597321	rs9623	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	5q13.1	PIK3R1	rs9623-C	0.4588	2E-10		0.02258455	[0.016-0.03] unit increase	Affymetrix [~ 2500000] (imputed)	N
1100	chr5	67604627	67604628	rs695166	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Anthropometric traits (multi-trait analysis)	4,988 Spanish ancestry individuals	336,107 British ancestry individuals	5q13.1	PIK3R1	rs695166-?		8E-15				Illumina [9499600] (imputed)	N
1100	chr5	67608714	67608714	rs10649426	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	5q13.1		rs10649426-TAGAA	NR	1E-10		0.0137	[0.0096-0.0178] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
1100	chr5	67608742	67608743	rs830557	30306274	Shah RL	2018-10-10	Hum Genet	Genome-wide association studies for corneal and refractive astigmatism in UK Biobank demonstrate a shared role for myopia susceptibility loci.	Corneal astigmatism	Up to 86,335 European ancestry individuals		5q13.1	PIK3R1	rs830557-C	0.529	7E-6		0.013	[0.0071-0.0189] dioptres increase	NR [5901671] (imputed)	N
1100	chr5	67609407	67609408	rs440292	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	5q13.1		rs440292-G	0.74452	2E-13		0.01856046	[0.014-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1100	chr5	67609407	67609408	rs440292	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	5q13.1		rs440292-G	0.744422	2E-17		0.021742469	[0.017-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1100	chr5	67609407	67609408	rs440292	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	5q13.1		rs440292-?	NR	8E-14				NR [~ 8900000] (imputed)	N
1100	chr5	67610347	67610348	rs449319	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	5q13.1	NR	rs449319-A	0.728022	4E-15		0.016249	[0.012-0.02] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
1100	chr5	67611485	67611486	rs184886	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	5q13.1	NR	rs184886-C	0.724	2E-6	(EA)	0.0333	[0.02-0.047] unit increase	Illumina [~ 11800000] (imputed)	N
1100	chr5	67616406	67616407	rs451157	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q13.1	NR	rs451157-A	0.765926	6E-13				Affymetrix, Illumina [24332387] (imputed)	N
1100	chr5	67623081	67623082	rs34292	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	5q13.1		rs34292-A	0.595216	3E-9		0.0165193	[0.011-0.022] unit increase	Illumina [13479924] (imputed)	N
1100	chr5	67624509	67624510	rs112423711	33407418	Jonsson A	2021-01-06	BMC Med Genomics	Genome-wide association study of circulating levels of glucagon during an oral glucose tolerance test.	Glucagon levels in response to oral glucose tolerance test (fasting)	553 European ancestry individuals, 1,346 individuals	NA	5q13.1	NR	rs112423711-A	0.0253	2E-7		0.5839	[0.36-0.8] unit decrease	Illumina [NR] (imputed)	N
1100	chr5	67625069	67625070	rs12519613	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Verbal-numerical reasoning	171,304 British ancestry individuals	NA	5q13.1		rs12519613-?	NR	2E-8				NR [7857346] (imputed)	N
1100	chr5	67625069	67625070	rs12519613	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	5q13.1	NR	rs12519613-?	NR	1E-7		5.32	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1100	chr5	67625069	67625070	rs12519613	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	5q13.1	PIK3R1	rs12519613-T	NR	2E-8		0.023170134	[0.015-0.031] unit decrease	Affymetrix [NR]	N
1101	chr5	67656620	67656621	rs62355986	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	5q13.1	NR	rs62355986-C	NR	2E-6		1.06	[NR]	Illumina [7158791] (imputed)	N
1101	chr5	67672451	67672452	rs149777838	34586716	Chen J	2021-09-29	Mol Genet Genomic Med	Heritability and genome-wide association study of blood pressure in Chinese adult twins.	Systolic blood pressure	137 Chinese ancestry twins	NA	5q13.1		rs149777838-?	NR	4E-6				Illumina [7401356] (imputed)	N
1101	chr5	67691468	67691469	rs10068082	32581322	Kakuta Y	2020-06-24	Sci Rep	An Integrated Genomic and Transcriptomic Analysis Reveals Candidates of Susceptibility Genes for Crohn's Disease in Japanese Populations.	Crohn's disease	713 Japanese ancestry cases, 2,063 Japanese ancestry controls	NA	5q13.1	PIK3R1	rs10068082-?	NR	2E-6		1.17	[1.10-1.26]	NR [7424691] (imputed)	N
1101	chr5	67694243	67694244	rs57825648	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (hospitalized covid vs population)	613 European ancestry cases, 680,416 European ancestry controls, 140 Hispanic or Latin American cases, 94,327 Hispanic or Latin American controls, 49 Black or African American cases, 22,410 Black or African American controls	NA	5q13.1		rs57825648-?	NR	5E-6		0.6276162	[0.36-0.9] unit increase	Illumina [9875426] (imputed)	N
1101	chr5	67699692	67699693	rs7721613	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	5q13.1		rs7721613-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1101	chr5	67707703	67707704	rs12234004	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	5q13.1		rs12234004-A	NR	4E-8		0.0126	[0.0081-0.0171] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
1101	chr5	67708228	67708229	rs10072935	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 15, philtrum width)	2,187 European ancestry individuals	NA	5q13.1	NR	rs10072935-A	0.2774	1E-6		0.1624	[0.097-0.228] unit increase	Illumina [10677593] (imputed)	N
1101	chr5	67713204	67713205	rs10075612	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	5q13.1		rs10075612-T	NR	1E-9		0.0152	[0.01-0.02] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
1101	chr5	67713204	67713205	rs10075612	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	5q13.1	NR	rs10075612-T	0.28	2E-11		0.0137	[0.0097-0.0177] unit increase	NR [NR]	N
1101	chr5	67713204	67713205	rs10075612	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	5q13.1	NR	rs10075612-T	0.277908	1E-12		0.017722301	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1101	chr5	67713204	67713205	rs10075612	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	5q13.1	NR	rs10075612-T	0.277909	3E-12		0.01750102	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1101	chr5	67713204	67713205	rs10075612	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	5q13.1		rs10075612-T	0.277875	4E-11		0.016366133	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1101	chr5	67713204	67713205	rs10075612	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	5q13.1		rs10075612-T	0.277891	8E-11		0.016156478	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1101	chr5	67714245	67714246	rs4976033	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	5q13.1		rs4976033-G	NR	2E-14		0.0158	[0.012-0.02] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
1101	chr5	67714245	67714246	rs4976033	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	5q13.1		rs4976033-G	NR	3E-9		0.0114	[0.0077-0.0151] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
1101	chr5	67714245	67714246	rs4976033	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Triglycerides	429,011 European ancestry individuals	NA	5q13.1		rs4976033-A	0.6	2E-21		0.019	mmol/L decrease	NR [NR] (imputed)	N
1101	chr5	67714245	67714246	rs4976033	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Sex hormone-binding globulin levels	389,354 European ancestry individuals	NA	5q13.1		rs4976033-A	0.6	5E-12		0.013	nmol/L increase	NR [NR] (imputed)	N
1101	chr5	67714245	67714246	rs4976033	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	5q13.1		rs4976033-A	0.6	7E-39				NR [NR] (imputed)	N
1101	chr5	67714245	67714246	rs4976033	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	High density lipoprotein cholesterol levels	392,965 European ancestry individuals	NA	5q13.1		rs4976033-A	0.6	3E-11		0.012	mmol/L increase	NR [NR] (imputed)	N
1101	chr5	67714245	67714246	rs4976033	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	5q13.1		rs4976033-A	0.6	5E-14		0.012	% increase	NR [NR] (imputed)	N
1101	chr5	67714245	67714246	rs4976033	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Aspartate aminotransferase levels	424,778 European ancestry individuals	NA	5q13.1		rs4976033-A	0.6	4E-8		0.011	U/L decrease	NR [NR] (imputed)	N
1101	chr5	67714245	67714246	rs4976033	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Alanine aminotransferase levels	429,203 European ancestry individuals	NA	5q13.1		rs4976033-A	0.6	3E-11		0.013	U/L decrease	NR [NR] (imputed)	N
1101	chr5	67714245	67714246	rs4976033	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	5q13.1	PIK3R1	rs4976033-A	0.598154	2E-12		0.00275662	[0.002-0.0035] unit decrease	Affymetrix [13995440] (imputed)	N
1101	chr5	67714245	67714246	rs4976033	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body fat percentage and HDL-C (pairwise)	277,811 European ancestry individuals, 10,022 East Asian, South Asian and African American ancestry individuals	NA	5q13.1	PIK3R1	rs4976033-A	0.5905	1E-10				Affymetrix, Illumina [2331072] (imputed)	N
1101	chr5	67714245	67714246	rs4976033	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	5q13.1	NR	rs4976033-G	NR	4E-16		0.0201	[0.015-0.025] unit increase	Affymetrix [9000000] (imputed)	N
1101	chr5	67714245	67714246	rs4976033	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	5q13.1		rs4976033-G	0.401681	3E-9		0.013687996	[0.0092-0.0182] unit decrease	Affymetrix [93095623] (imputed)	N
1101	chr5	67714245	67714246	rs4976033	32719433	Liu Y	2020-07-27	Int J Obes (Lond)	Four pleiotropic loci associated with fat mass and lean mass.	Leg fat mass and leg lean mass (pleiotropy)	9,684 European ancestry individuals, 1,541 Han Chinese ancestry individuals, 847 African American individuals, 445 Hispanic individuals	370,097 European ancestry individuals	5q13.1	PIK3R1	rs4976033-G	NR	6E-7				Affymetrix, Illumina [6879267] (imputed)	N
1101	chr5	67714245	67714246	rs4976033	32719433	Liu Y	2020-07-27	Int J Obes (Lond)	Four pleiotropic loci associated with fat mass and lean mass.	Leg fat mass (lean adjusted)	9,684 European ancestry individuals, 1,541 Han Chinese ancestry individuals, 847 African American individuals, 445 Hispanic individuals	370,097 European ancestry individuals	5q13.1	PIK3R1	rs4976033-G	NR	5E-7		0.01	NR unit decrease	Affymetrix, Illumina [6879267] (imputed)	N
1101	chr5	67714245	67714246	rs4976033	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	5q13.1	NR	rs4976033-G	0.4114	2E-9		0.028	[0.019-0.037] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1101	chr5	67714245	67714246	rs4976033	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	5q13.1	NR	rs4976033-G	0.4337	1E-10		0.0251	[0.017-0.033] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1101	chr5	67714245	67714246	rs4976033	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	5q13.1	PIK3R1	rs4976033-A	0.597878	3E-18		0.0179116	[0.014-0.022] unit decrease	Affymetrix [NR] (imputed)	N
1101	chr5	67714245	67714246	rs4976033	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	5q13.1	PIK3R1	rs4976033-A	0.598176	1E-9		0.012025	[0.0082-0.0159] unit increase	Affymetrix [NR] (imputed)	N
1101	chr5	67714245	67714246	rs4976033	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	5q13.1	MARVELD2	rs4976033-?	NR	3E-14		0.0206	[0.016-0.025] unit increase	Affymetrix [5701386] (imputed)	N
1101	chr5	67714245	67714246	rs4976033	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	5q13.1	NR	rs4976033-A	0.598889	1E-19		0.00722948	[0.0055-0.0089] unit increase	Affymetrix [16582909] (imputed)	N
1101	chr5	67714245	67714246	rs4976033	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	5q13.1	NR	rs4976033-A	0.598947	3E-17		0.0106141	[0.0081-0.0131] unit increase	Affymetrix [16585854] (imputed)	N
1101	chr5	67714245	67714246	rs4976033	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	5q13.1	NR	rs4976033-A	0.598889	2E-11		0.00590913	[0.004-0.0078] unit increase	Affymetrix [16582965] (imputed)	N
1101	chr5	67714245	67714246	rs4976033	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	5q13.1	NR	rs4976033-A	0.598947	2E-9		0.00867701	[0.0058-0.0116] unit increase	Affymetrix [16585866] (imputed)	N
1101	chr5	67714245	67714246	rs4976033	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	5q13.1		rs4976033-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1101	chr5	67714245	67714246	rs4976033	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes (adjusted for BMI)	50,409 European ancestry cases, 523,897 European ancestry controls	NA	5q13.1	PIK3R1	rs4976033-G	0.4105	1E-9		1.05	[1.03-1.06]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1101	chr5	67714245	67714246	rs4976033	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	Triglyceride levels	up to 237,050 European ancestry individuals, up to 16,935 African ancestry individuals, up to 30,468 South Asian ancestry individuals, up to 8,287 East Asian ancestry individuals, 5,084 Hispanic individuals	up to 286,268 European and unknown ancestry individuals	5q13.1	PIK3R1	rs4976033-G	NR	1E-15		0.016180854	[0.012-0.02] unit increase	Illumina [242289]	N
1101	chr5	67714245	67714246	rs4976033	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	Triglyceride levels	up to 237,050 European ancestry individuals	NA	5q13.1	NR	rs4976033-G	0.42	2E-7		0.016	unit increase	Illumina [242289]	N
1101	chr5	67739273	67739274	rs113246091	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	5q13.1	LOC105379013	rs113246091-G	0.918	2E-19		9.027	NR z score increase	Illumina [26237160] (imputed)	N
1101	chr5	67739273	67739274	rs113246091	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	5q13.1	PIK3R1	rs113246091-?	NR	8E-10				Affymetrix, Illumina [at least 5248638] (imputed)	N
1101	chr5	67739273	67739274	rs113246091	28452372	Gorski M	2017-04-28	Sci Rep	1000 Genomes-based meta-analysis identifies 10 novel loci for kidney function.	Glomerular filtration rate (creatinine)	110,517 European ancestry individuals		5q13.1	PIK3R1	rs113246091-A	0.1	2E-9		0.0095	[0.0064-0.0126] unit decrease	Affymetrix, Illumina [up to 10971307] (imputed)	N
1101	chr5	67741065	67741066	rs11745891	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	5q13.1		rs11745891-C	NR	1E-28		0.0339	[0.028-0.04] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
1101	chr5	67742037	67742038	rs55938024	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	5q13.1	PIK3R1	rs55938024-A	0.1159	3E-29		0.0065	[0.0053-0.0077] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
1101	chr5	67750212	67750213	rs72759880	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	5q13.1	PIK3R1	rs72759880-T	0.1079	1E-30		0.0056	[0.0046-0.0066] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
1101	chr5	67751220	67751221	rs42905	33549134	Adolphe C	2021-02-06	Genome Med	Genetic and functional interaction network analysis reveals global enrichment of regulatory T cell genes influencing basal cell carcinoma susceptibility.	Basal cell carcinoma	17,416 European ancestry cases, 375,455 European ancestry controls	NA	5q13.1	PIK3R1	rs42905-A	0.455045	2E-8		0.06164343	[0.04-0.083] unit increase	Affymetrix [7260263] (imputed)	N
1101	chr5	67751220	67751221	rs42905	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Keratinocyte cancer (MTAG)	at least 18,538 European ancestry cases, at least 340,302 European ancestry controls	NA	5q13.1	CTC-537E7.3	rs42905-A	NR	9E-7		1.0416667	[1.02-1.06]	Affymetrix [7600000] (imputed)	N
1101	chr5	67751220	67751221	rs42905	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Basal cell carcinoma	31,787 European ancestry cases, 619,351 European ancestry controls	NA	5q13.1	CTC-537E7.3	rs42905-A	0.449415	3E-8		1.05	[1.03-1.06]	Affymetrix, Illumina [up to 9061544] (imputed)	N
1101	chr5	67756586	67756587	rs79664696	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	5q13.1		rs79664696-G	NR	1E-8		0.0173	[0.011-0.023] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
1102	chr5	67765894	67765896	rs57106444	33692830	Indencleef K	2021-02-22	Front Genet	The Intersection of the Genetic Architectures of Orofacial Clefts and Normal Facial Variation.	Facial morphology traits (59 NSCL/P endophenotypic segments)	8,246 European ancestry individuals	NA	5q13.1	NR	rs57106444-?	NR	2E-8	(Quadrant IV (Upper face), Segment 60)	0.02582613	NR unit decrease	NR [7417619] (imputed)	N
1102	chr5	67776333	67776334	rs10940165	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	5q13.1		rs10940165-C	0.18	1E-18		8.8	z score increase	Affymetrix [9061022] (imputed)	N
1102	chr5	67776333	67776334	rs10940165	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	5q13.1	NR	rs10940165-C	0.1691	6E-13				NR [9056863] (imputed)	N
1102	chr5	67781020	67781021	rs10515086	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	5q13.1		rs10515086-T	0.17	2E-17		8.48	z score increase	Affymetrix [9061022] (imputed)	N
1102	chr5	67781020	67781021	rs10515086	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	5q13.1	NR	rs10515086-T	0.1695	3E-9				NR [9056863] (imputed)	N
1102	chr5	67798509	67798510	rs79782229	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	5q13.1	NR	rs79782229-G	NR	2E-17		0.0376	[0.029-0.046] unit decrease	Affymetrix [9000000] (imputed)	N
1102	chr5	67798509	67798510	rs79782229	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	5q13.1	NR	rs79782229-G	NR	6E-12		0.0305	[0.022-0.039] unit increase	Affymetrix [9000000] (imputed)	N
1102	chr5	67798509	67798510	rs79782229	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	5q13.1	NR	rs79782229-G	NR	1E-17		0.0379	[0.029-0.047] unit increase	Affymetrix [9000000] (imputed)	N
1102	chr5	67805271	67805272	rs10041403	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	5q13.1		rs10041403-T	0.8339	2E-15		0.0151	[0.011-0.019] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1102	chr5	67805271	67805272	rs10041403	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	5q13.1	Intergenic	rs10041403-T	0.8339	3E-15	(MTAG)	0.014	[0.01-0.018] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1102	chr5	67808792	67808792	rs796121001	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	5q13.1	CTC-537E7.1	rs796121001-T	NR	3E-9		0.0185707	[0.012-0.025] unit decrease	Affymetrix [323123] (imputed)	N
1102	chr5	67815012	67815013	rs17257827	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Creatinine levels	69,591 European ancestry individuals	NA	5q13.1	CTC-537E7.1, CTC-537E7.3	rs17257827-G	0.140551	3E-10		0.055041	[0.039-0.071] unit increase	Illumina [24961484] (imputed)	N
1102	chr5	67818951	67818952	rs10471753	27701424	Castano-Betancourt MC	2016-10-04	PLoS Genet	Novel Genetic Variants for Cartilage Thickness and Hip Osteoarthritis.	Hip minimal joint space width	6,523 European ancestry individuals, 6,490 individuals	1,572 European ancestry individuals, 6,655 individuals	5q13.1	PIK3R1	rs10471753-C	0.61	4E-9		0.062	[0.04-0.084] unit increase	Illumina [2385183] (imputed)	N
1102	chr5	67820216	67820217	rs11960179	26831199	Pattaro C	2016-01-21	Nat Commun	Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function.	Glomerular filtration rate (creatinine)	133,413 European ancestry individuals	42,166 European ancestry individuals, up to 16,471 African ancestry individuals, up to 42,296 Asian ancestry individuals	5q13.1	PIK3R1	rs11960179-A	0.12	2E-7	(EA)	0.0069	[0.0044-0.0094] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1102	chr5	67824689	67824690	rs56194430	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	5q13.1		rs56194430-T	0.17	7E-9		5.79	z score increase	Affymetrix [9061022] (imputed)	N
1102	chr5	67824689	67824690	rs56194430	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	5q13.1	CTC-537E7.1	rs56194430-T	0.1638	3E-9		0.016086131	[0.011-0.021] unit decrease	Affymetrix [up to 18485882] (imputed)	N
1102	chr5	67825132	67825133	rs56132153	34450027	Boer CG	2021-08-24	Cell	Deciphering osteoarthritis genetics across 826,690 individuals from 9 populations.	Osteoarthritis (with total hip replacement)	23,021 European ancestry cases, 296,016 European ancestry controls	NA	5q13.1		rs56132153-A	0.6056	4E-9		1.0683335	[1.045137445-1.092044467]	Affymetrix, Illumina [NR] (imputed)	N
1102	chr5	67853545	67853546	rs1423237	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	5q13.1	NR	rs1423237-G	NR	1E-13		0.032	[0.024-0.04] unit decrease	Affymetrix [9000000] (imputed)	N
1102	chr5	67853545	67853546	rs1423237	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	5q13.1	NR	rs1423237-G	NR	2E-12		0.0303	[0.022-0.039] unit increase	Affymetrix [9000000] (imputed)	N
1102	chr5	67853545	67853546	rs1423237	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	5q13.1	NR	rs1423237-G	NR	2E-13		0.0319	[0.023-0.04] unit increase	Affymetrix [9000000] (imputed)	N
1102	chr5	67857980	67857981	rs145764941	30487263	Pollack S	2018-11-28	Diabetes	Multiethnic Genome-wide Association Study of Diabetic Retinopathy using Liability Threshold Modeling of Duration of Diabetes and Glycemic Control.	Diabetic retinopathy (moderate NPDR and PDR)	644 European ancestry cases, 1,970 European ancestry controls, 768 African American cases, 941 African American controls	2,388 East Asian ancestry cases, 6,219 East Asian ancestry controls, 1,658 European ancestry cases, 3,019 European ancestry controls, 1,014 Hispanic cases, 1,240 Hispanic controls	5q13.1	NR	rs145764941-?	NR	2E-6	(AA, adjusted for duration of diabetes and glycemic control)	1.63	[NR]	Affymetrix, Illumina [NR] (imputed)	N
1103	chr5	67901291	67901292	rs706753	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5q13.1	SLC30A5	rs706753-?	NR	8E-6	(pantothenic acid)	0.2084404	[0.12-0.3] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1103	chr5	67902651	67902652	rs183218254	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	5q13.1	NR	rs183218254-?	NR	9E-6		0.5171	[0.29-0.74] unit increase	Illumina [at least 560000] (imputed)	N
1103	chr5	67926987	67926988	rs2925732	30920136	Stapleton CP	2019-02-27	Am J Transplant	The impact of donor and recipient common clinical and genetic variation on estimated glomerular filtration rate in a European renal transplant population.	Estimated glomerular filtration rate after 5 years in renal transplantation (recipient effect)	Up to 2,921 European ancestry individuals	NA	5q13.1	intergenic	rs2925732-A	NR	7E-6	(adjusted for clinical variables)			Illumina [up to 3935887] (imputed)	N
1103	chr5	67991180	67991181	rs146172284	32902719	Hebbar P	2020-09-09	Hum Genet	Genome-wide landscape establishes novel association signals for metabolic traits in the Arab population.	Height	2,732 Kuwaiti ancestry individuals	NA	5q13.1	LOC105379010, LOC105379014	rs146172284-?	NR	4E-7		5.09	NR unit decrease	Illumina [up to 1520000] (imputed)	N
1103	chr5	68006045	68006046	rs246978	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	5q13.1		rs246978-?	NR	4E-14				NR [~ 8900000] (imputed)	N
1103	chr5	68007802	68007803	rs246973	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	5q13.1	SLC30A5	rs246973-T	0.2871	7E-16		0.2244	[0.17-0.28] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1103	chr5	68008181	68008182	rs139468359	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-18 levels	3,636 Finnish ancestry individuals	NA	5q13.1	NR	rs139468359-C		4E-6		0.5067	[0.29-0.72] SD units decrease	NR [10700000] (imputed)	N
1104	chr5	68034735	68034736	rs152353	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	5q13.1	intergenic	rs152353-A	0.199	4E-12		0.0163	[0.012-0.021] unit increase	Affymetrix [18391927] (imputed)	N
1104	chr5	68042185	68042186	rs35094860	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	5q13.1	NR	rs35094860-G	NR	7E-29		0.0468	[0.039-0.055] unit increase	Affymetrix [9000000] (imputed)	N
1104	chr5	68042185	68042186	rs35094860	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	5q13.1	NR	rs35094860-G	NR	3E-31		0.0489	[0.041-0.057] unit decrease	Affymetrix [9000000] (imputed)	N
1104	chr5	68043242	68043243	rs9291932	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	5q13.1		rs9291932-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1104	chr5	68043893	68043894	rs78660602	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	5q13.1	PIK3R1	rs78660602-A	0.918	1E-7		0.631	[0.29-0.97] ml/min/1.73m2 decrease	Affymetrix, Illumina [at least 5248638] (imputed)	N
1104	chr5	68043899	68043900	rs73116951	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	5q13.1		rs73116951-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1104	chr5	68092229	68092230	rs6860194	28394258	Wild PS	2017-04-10	J Clin Invest	Large-scale genome-wide analysis identifies genetic variants associated with cardiac structure and function.	Isovolumetric relaxation time	21,852 European ancestry individuals	14,787 European ancestry individuals	5q13.1	SLC30A5	rs6860194-G	0.24	2E-6		0.002	[0.0012-0.0028] unit decrease	Affymetrix, Illumina [at least 283291] (imputed)	N
1105	chr5	68186027	68186028	rs116656892	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-18 levels	3,636 Finnish ancestry individuals	NA	5q13.1	NR	rs116656892-C		1E-8		0.5298	[0.35-0.71] SD units decrease	NR [10700000] (imputed)	N
1105	chr5	68214995	68214996	rs113232387	30787463	Escala-Garcia M	2019-02-21	Br J Cancer	Genome-wide association study of germline variants and breast cancer-specific mortality.	Breast cancer specific mortality in estrogen receptor negative breast cancer	2,125 European ancestry cases, 14,047 European ancestry controls	NA	5q13.1	NR	rs113232387-?	NR	2E-6		2.2127366	[1.59-3.08]	Affymetrix, Illumina [~ 10400000] (imputed)	N
1105	chr5	68216834	68216835	rs6869389	29698431	Roosenboom J	2018-04-26	PLoS One	Mapping genetic variants for cranial vault shape in humans.	Maximum cranial length	4,419 European ancestry individuals	NA	5q13.1	NR	rs6869389-G	0.246	2E-7		0.9518	[0.54-1.37] unit increase	Illumina [at least 567677] (imputed)	N
1105	chr5	68265210	68265211	rs76215063	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	5q13.1	LINC02198	rs76215063-T	0.9187	4E-9		0.0041	[0.0027-0.0055] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
1106	chr5	68386331	68386332	rs397883261	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	5q13.1		rs397883261-G	NR	4E-12		0.014	[0.01-0.018] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
1106	chr5	68414333	68414334	rs61749603	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q13.2	NR	rs61749603-A	0.01045	3E-9	(NPC2)	0.07997	NR unit increase	Illumina [1671387] (imputed)	N
1107	chr5	68422636	68422637	rs12655885	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	5q13.2	SLC30A5	rs12655885-A	0.573954	2E-14		0.00179627	[0.0013-0.0023] unit increase	Affymetrix [13995440] (imputed)	N
1107	chr5	68432519	68432520	rs77287453	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q13.2	NR	rs77287453-A	0.02091	5E-9	(HSPA9)	0.6908	NR unit increase	Illumina [1671387] (imputed)	N
1107	chr5	68432519	68432520	rs77287453	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q13.2	NR	rs77287453-A	0.02091	4E-9	(CTSC)	0.0195	NR unit increase	Illumina [1671387] (imputed)	N
1107	chr5	68432519	68432520	rs77287453	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q13.2	NR	rs77287453-A	0.02091	4E-10	(CTSB)	0.44	NR unit increase	Illumina [1671387] (imputed)	N
1107	chr5	68432519	68432520	rs77287453	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q13.2	NR	rs77287453-A	0.02091	3E-10	(CTSA)	0.04571	NR unit increase	Illumina [1671387] (imputed)	N
1107	chr5	68432519	68432520	rs77287453	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q13.2	NR	rs77287453-A	0.02091	2E-8	(HEXA)	0.03147	NR unit increase	Illumina [1671387] (imputed)	N
1107	chr5	68432519	68432520	rs77287453	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q13.2	NR	rs77287453-A	0.02091	2E-8	(GK2)	0.006793	NR unit increase	Illumina [1671387] (imputed)	N
1107	chr5	68432519	68432520	rs77287453	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q13.2	NR	rs77287453-A	0.02091	2E-8	(GARS)	0.02801	NR unit increase	Illumina [1671387] (imputed)	N
1107	chr5	68432519	68432520	rs77287453	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q13.2	NR	rs77287453-A	0.02091	1E-8	(VARS)	0.04729	NR unit increase	Illumina [1671387] (imputed)	N
1107	chr5	68432519	68432520	rs77287453	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q13.2	NR	rs77287453-A	0.02091	1E-8	(HSPA8)	1.02	NR unit increase	Illumina [1671387] (imputed)	N
1107	chr5	68512474	68512475	rs372024167	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	5q13.2		rs372024167-C	NR	9E-9		0.0148	[0.0097-0.0199] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
1107	chr5	68516872	68516873	rs192929104	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-18 levels	3,636 Finnish ancestry individuals	NA	5q13.2	NR	rs192929104-G		3E-9		0.9013	[0.61-1.2] SD units increase	NR [10700000] (imputed)	N
1108	chr5	68579946	68579947	rs4976187	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	5q13.2		rs4976187-T	NR	9E-16		0.0195	[0.015-0.024] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
1108	chr5	68590394	68590395	rs11741775	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	5q13.2	CCDC125	rs11741775-T	0.442739	9E-22		0.021383645	[0.017-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1108	chr5	68590394	68590395	rs11741775	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	5q13.2	CCDC125	rs11741775-T	0.442711	9E-20		0.020335084	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1108	chr5	68590394	68590395	rs11741775	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	5q13.2	CCDC125	rs11741775-T	0.442681	2E-31		0.026021253	[0.022-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
1108	chr5	68590394	68590395	rs11741775	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	5q13.2	CCDC125	rs11741775-T	0.442588	1E-10		0.014497487	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
1108	chr5	68590399	68590400	rs11741826	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	5q13.2	CCDC125	rs11741826-C	0.4442	1E-15		0.02899186	[0.022-0.036] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1108	chr5	68590399	68590400	rs11741826	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	5q13.2	CCDC125	rs11741826-C	0.4441	1E-9		0.02199452	[0.015-0.029] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1108	chr5	68590399	68590400	rs11741826	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	5q13.2	CCDC125	rs11741826-C	0.4441	2E-15		0.02870303	[0.022-0.036] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1108	chr5	68590399	68590400	rs11741826	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	5q13.2	CCDC125	rs11741826-C	0.4442	9E-14		0.02712478	[0.02-0.034] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1108	chr5	68590399	68590400	rs11741826	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	5q13.2	CCDC125	rs11741826-C	0.4442	2E-15		0.02881436	[0.022-0.036] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1108	chr5	68592922	68592923	rs72767881	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	5q13.2		rs72767881-T	NR	5E-22		0.0206	[0.016-0.025] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
1108	chr5	68592922	68592923	rs72767881	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	5q13.2	CCDC125	rs72767881-T	0.4443	3E-12		0.02512704	[0.018-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1108	chr5	68592922	68592923	rs72767881	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	5q13.2	CCDC125	rs72767881-T	0.4445	4E-15		0.02838679	[0.021-0.035] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1108	chr5	68592922	68592923	rs72767881	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	5q13.2	CCDC125	rs72767881-T	0.4445	3E-12		0.02508316	[0.018-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1108	chr5	68593861	68593861	rs200950089	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	5q13.2		rs200950089-GT	NR	1E-10		0.015	[0.01-0.02] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
1108	chr5	68610289	68610289	rs113029933	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	5q13.2	CCDC125	rs113029933-CA	0.535926	1E-13		0.016529335	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1108	chr5	68611457	68611458	rs34449757	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	5q13.2		rs34449757-G	0.557	3E-12				Affymetrix [10369434] (imputed)	N
1108	chr5	68611582	68611583	rs66514959	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q13.2	NR	rs66514959-A	0.453446	2E-29				Affymetrix, Illumina [24649327] (imputed)	N
1108	chr5	68611582	68611583	rs66514959	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	5q13.2	NR	rs66514959-A	0.444269	6E-30		0.022273	[0.018-0.026] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1108	chr5	68611582	68611583	rs66514959	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q13.2	NR	rs66514959-A	0.449277	2E-37				Affymetrix, Illumina [23114412] (imputed)	N
1108	chr5	68611582	68611583	rs66514959	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	5q13.2	NR	rs66514959-A	0.444298	2E-38		0.025817	[0.022-0.03] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
1108	chr5	68616330	68616331	rs10471774	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	5q13.2		rs10471774-?	NR	9E-27				NR [~ 8900000] (imputed)	N
1108	chr5	68627208	68627209	rs62371692	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	5q13.2		rs62371692-T	NR	5E-11		0.0116	[0.0081-0.0151] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
1108	chr5	68648769	68648770	rs9291949	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	5q13.2	NR	rs9291949-A	0.47	2E-8		0.0102	[0.0065-0.0139] unit decrease	NR [NR]	N
1108	chr5	68656326	68656327	rs2010352	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	5q13.2	AK6	rs2010352-A	0.4534	4E-11		0.0018	[0.0012-0.0024] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
1109	chr5	68682227	68682228	rs756527674	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Lymphocyte counts	443,762 European ancestry individuals	NA	5q13.2		rs756527674-?	NR	1E-8		0.615992	[0.4-0.83] unit decrease	NR [9800000] (imputed)	N
1109	chr5	68682535	68682536	rs17229943	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Interleukin-18 levels	21,758 European ancestry individuals	9,173 individuals	5q13.2		rs17229943-A	0.94	3E-30		0.2309	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1109	chr5	68682535	68682536	rs17229943	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-18 levels	3,636 Finnish ancestry individuals	NA	5q13.2	OCLN	rs17229943-C		2E-11		0.312	[0.22-0.4] SD units increase	NR [10700000] (imputed)	N
1109	chr5	68706824	68706825	rs1168404	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	5q13.2	RAD17	rs1168404-T	0.3809	5E-9		0.0045	[0.0029-0.0061] unit increase	Affymetrix, Illumina [8176554] (imputed)	N
1109	chr5	68769559	68769560	rs76915606	32235003	Arbeev KG	2020-04-01	Aging (Albany NY)	Genetics of physiological dysregulation: findings from the long life family study using joint models.	Hand grip strength (Mahalanobis distance)	4,608 European ancestry individuals	NA	5q13.2	OCLN	rs76915606-?	NR	5E-6				Illumina [1464300]	N
1109	chr5	68808833	68808834	rs149378738	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-18 levels	3,636 Finnish ancestry individuals	NA	5q13.2	NR	rs149378738-C		2E-6		0.3796	[0.22-0.54] SD units decrease	NR [10700000] (imputed)	N
1110	chr5	68864280	68864281	rs154424	30694715	Sakornsakolpat P	2019-01-29	Am J Respir Cell Mol Biol	Genome-Wide Association Analysis of Single Breath Diffusing Capacity of Carbon Monoxide (DLCO).	Diffusing capacity of carbon monoxide	2,584 European ancestry individuals with chronic obstructive pulmonary disease, 3,002 European ancestry healthy individuals, 343 African American individuals with chronic obstructive pulmonary disease, 1,006 African American healthy individuals	NA	5q13.2	GTF2H2C	rs154424-A	0.07	6E-6	(African American)	0.38	0.22-0.55 unit decrease	Illumina [NR] (imputed)	N
1114	chr5	69461440	69461441	rs78077967	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	5q13.2	NR	rs78077967-G	0.565103	3E-10		0.014526	[0.01-0.019] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
1121	chr5	70305552	70305553	rs28751879	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q13.2	NR	rs28751879-T	0.126353	5E-10				Affymetrix, Illumina [24649327] (imputed)	N
1121	chr5	70305552	70305553	rs28751879	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q13.2	NR	rs28751879-T	0.126825	2E-11				Affymetrix, Illumina [23114412] (imputed)	N
1121	chr5	70309997	70309998	rs28478097	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	5q13.2	NR	rs28478097-G	NR	2E-10		0.0164	[0.011-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
1122	chr5	70448904	70448904	rs550436640	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	5q13.2	NR	rs550436640-I	0.145074	6E-12		0.021235	[0.015-0.027] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1122	chr5	70448914	70448914	rs201507400	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	5q13.2		rs201507400-GA	NR	3E-10		0.0226	[0.016-0.03] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1123	chr5	70621765	70621766	rs71223697	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	5q13.2		rs71223697-G	NR	8E-10		0.0161	[0.011-0.021] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
1124	chr5	70665525	70665526	rs115216147	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	5q13.2	NR	rs115216147-T	0.933746	6E-10		0.025667	[0.018-0.034] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
1125	chr5	70797602	70797603	rs186740884	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-18 levels	3,636 Finnish ancestry individuals	NA	5q13.2	NR	rs186740884-C		7E-6		0.3537	[0.2-0.51] SD units decrease	NR [10700000] (imputed)	N
1125	chr5	70798540	70798541	rs36009281	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	5q13.2	NR	rs36009281-G	NR	3E-14		0.032	[0.024-0.04] unit increase	Affymetrix [9000000] (imputed)	N
1125	chr5	70834891	70834892	rs35131626	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	5q13.2	BDP1	rs35131626-A	0.029	9E-6	(Dinner intake, adj EER )	0.04	[NR] kcal increase	Illumina [899892]	N
1125	chr5	70856377	70856378	rs277939	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque score in type 2 diabetes	691 African American individuals	205 African American individuals	5q13.2	BDP1	rs277939-?	NR	3E-6		1.082	[0.49-1.67] unit decrease	Illumina [at least 13000000] (imputed)	N
1126	chr5	70948617	70948618	rs138725621	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-18 levels	3,636 Finnish ancestry individuals	NA	5q13.2	NR	rs138725621-G		7E-6		0.3565	[0.2-0.51] SD units increase	NR [10700000] (imputed)	N
1126	chr5	70960133	70960133	rs34704083	31586183	Niazi Y	2019-10-04	Mutagenesis	Distinct pathways associated with chromosomal aberration frequency in a cohort exposed to genotoxic compounds compared to general population.	Chromosomal aberration frequency (chromatid type)	607 European and unknown ancestry genotoxic compound-exposed individuals, 866 European and unknown ancestry unexposed individuals	NA	5q13.2	MCCC2	rs34704083-?	NR	6E-6		0.08	[NR] unit increase	Illumina [> 2600000] (imputed)	N
1126	chr5	70976502	70976503	rs16870827	30718454	Arnau-Soler A	2019-02-04	Transl Psychiatry	Genome-wide by environment interaction studies of depressive symptoms and psychosocial stress in UK Biobank and Generation Scotland.	Depressive symptoms x independent stressful life events interaction (2df test)	4,919 European ancestry individuals	NA	5q13.2	MCCC2	rs16870827-G	0.1787	6E-6		0.0690271	NR unit increase	Illumina [560351]	N
1126	chr5	71022221	71022222	rs16871509	29855537	Hirata T	2018-05-31	Sci Rep	Japanese GWAS identifies variants for bust-size, dysmenorrhea, and menstrual fever that are eQTLs for relevant protein-coding or long non-coding RNAs.	Menstruation quality of life impact (pressure in breast)	642 Japanese ancestry female cases, 5,092 Japanese ancestry female controls	667 Japanese ancestry female cases, 4,947 Japanese ancestry female controls	5q13.2	NR	rs16871509-A	0.119707494	2E-6		0.28391933	[0.17-0.4] unit increase	Affymetrix [536506]	N
1127	chr5	71068160	71068161	rs13163538	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	5q13.2	intergenic	rs13163538-C	0.1623	3E-8		0.1563	[0.1-0.21] mmHg decrease	Affymetrix [NR] (imputed)	N
1127	chr5	71102575	71102576	rs143253577	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-18 levels	3,636 Finnish ancestry individuals	NA	5q13.2	NR	rs143253577-G		7E-8		0.4824	[0.31-0.66] SD units increase	NR [10700000] (imputed)	N
1127	chr5	71171553	71171554	rs13155673	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5q13.2	MCCC2	rs13155673-?	NR	8E-6	(SM 18:1)	0.18614863	[0.1-0.27] unit increase	Affymetrix [at least 2500000] (imputed)	N
1128	chr5	71252445	71252446	rs1217752	28468790	Agopian AJ	2017-06-01	Circ Cardiovasc Genet	Genome-Wide Association Studies and Meta-Analyses for Congenital Heart Defects.	Conotruncal heart defects (maternal effects)	up to 838 European ancestry trios	NA	5q13.2	intergenic	rs1217752-?	NR	2E-6		1.080754	[1.046851-1.115756]	Illumina [at least 4756722] (imputed)	N
1128	chr5	71252445	71252446	rs1217752	28468790	Agopian AJ	2017-06-01	Circ Cardiovasc Genet	Genome-Wide Association Studies and Meta-Analyses for Congenital Heart Defects.	Congenital heart disease (maternal effect)	1,119 European ancestry trios	NA	5q13.2	intergenic	rs1217752-?	NR	2E-6		1.079766	[1.04621-1.114399]	Illumina [at least 4756722] (imputed)	N
1128	chr5	71291000	71291001	rs6872700	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Unilateral cleft lip and palate	205 Asian ancestry cases, 315 European ancestry cases, 692 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	5q13.2	NR	rs6872700-?	NR	6E-6		0.67	[0.62-0.72]	Illumina [539000] (imputed)	N
1129	chr5	71308329	71308330	rs16873997	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Fibroblast growth factor basic levels	7,565 Finnish ancestry individuals	NA	5q13.2	NR	rs16873997-G		3E-6		0.4922	[0.29-0.7] SD units increase	NR [10700000] (imputed)	N
1129	chr5	71380354	71380355	rs17300532	31250797	Brick LA	2019-05-01	J Stud Alcohol Drugs	Characterization of DSM-IV Opioid Dependence Among Individuals of European Ancestry.	Opioid dependence	2,120 European ancestry cases, 1,944 European ancestry controls	NA	5q13.2	LOC105379028	rs17300532-T	NR	2E-7		0.06	[0.04-0.08] unit increase	Illumina [6200495] (imputed)	N
1129	chr5	71394386	71394387	rs115829748	29695241	Charmet R	2018-04-25	Cardiovasc Diabetol	Novel risk genes identified in a genome-wide association study for coronary artery disease in patients with type 1 diabetes.	Coronary artery disease in type 1 diabetes	434 European ancestry cases with coronary artery disease, 3,123 European ancestry cases without coronary artery disease	585 cases with coronary artery disease, 2,612 cases without coronary artery disease	5q13.2	MAP1B	rs115829748-T	0.04	1E-9	(EA)	3.16	[NR]	Illumina [6728637] (imputed)	N
1129	chr5	71399690	71399691	rs115256310	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Granulocyte-colony stimulating factor levels	7,904 Finnish ancestry individuals	NA	5q13.2	NR	rs115256310-G		7E-7		0.6821	[0.42-0.95] SD units increase	NR [10700000] (imputed)	N
1129	chr5	71400415	71400416	rs35752015	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	5q13.2		rs35752015-?	NR	6E-11				NR [~ 8900000] (imputed)	N
1129	chr5	71410355	71410356	rs2199161	18839057	Lesch KP	2008-10-07	J Neural Transm (Vienna)	Molecular genetics of adult ADHD: converging evidence from genome-wide association and extended pedigree linkage studies.	Attention deficit hyperactivity disorder	343 European ancestry cases, 250 European ancestry controls, 54 controls	NA	5q13.2	MAP1B	rs2199161-?	NR	2E-6				Affymetrix [504219]	N
1130	chr5	71455273	71455274	rs5001173	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 14, intercanthal width)	2,187 European ancestry individuals	NA	5q13.2	NR	rs5001173-A	0.2675	4E-6		0.1566	[0.09-0.223] unit decrease	Illumina [10677593] (imputed)	N
1130	chr5	71544539	71544543	rs34684973	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Pulse pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	5q13.2	chr5mb71	rs34684973-?	0.61735353	2E-6		0.15	[0.088-0.212] unit increase	Affymetrix [~ 9800000] (imputed)	N
1131	chr5	71636796	71636797	rs11297261	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	5q13.2		rs11297261-G	NR	4E-12		0.016	[0.011-0.021] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
1131	chr5	71654854	71654855	rs7714219	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	5q13.2	PTCD2	rs7714219-G		4E-9		0.164	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1131	chr5	71657413	71657414	rs62364788	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	5q13.2		rs62364788-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1131	chr5	71688222	71688223	rs13158670	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	5q13.2		rs13158670-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1131	chr5	71690341	71690342	rs11750874	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	5q13.2		rs11750874-A	0.109	1E-14				Affymetrix [10369434] (imputed)	N
1131	chr5	71693462	71693463	rs4703854	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	5q13.2	NR	rs4703854-T	0.761629	5E-8		0.0433116	[0.028-0.059] unit increase	Affymetrix [17914406] (imputed)	N
1131	chr5	71693898	71693899	rs4703855	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Intraocular pressure	133,492 European ancestry individuals	NA	5q13.2	PTCD2	rs4703855-C	0.7	3E-7				Affymetrix, Illumina [8002429] (imputed)	N
1131	chr5	71693898	71693899	rs4703855	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Glaucoma	7,947 British ancestry cases, 119,318 British ancestry controls	NA	5q13.2	PTCD2	rs4703855-C	0.7	6E-6		1.09	NR	Affymetrix [at least 8002429] (imputed)	N
1131	chr5	71693898	71693899	rs4703855	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	5q13.2	intergenic	rs4703855-?	NR	3E-8	(subset analysis)			Illumina [130052]	N
1131	chr5	71693898	71693899	rs4703855	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	5q13.2	NR	rs4703855-G	0.7	2E-6	(EA)	1.0675422		Affymetrix, Illumina [~ 9000000] (imputed)	N
1131	chr5	71693898	71693899	rs4703855	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	5q13.2	NR	rs4703855-G	0.7	7E-11	(EA)	1.0736468		Affymetrix, Illumina [~ 9000000] (imputed)	N
1131	chr5	71693898	71693899	rs4703855	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	5q13.2	intergenic	rs4703855-G	0.7	3E-8	(EA)	1.0760114	[1.05-1.1]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1131	chr5	71694836	71694837	rs9293291	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	5q13.2		rs9293291-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1131	chr5	71695879	71695880	rs10040192	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	5q13.2		rs10040192-C	NR	1E-11		0.0152	[0.011-0.02] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
1131	chr5	71695879	71695880	rs10040192	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	5q13.2	PTCD2	rs10040192-C	0.481842	3E-8		1.0342108	[1.02195975406116-1.04660871407771]	NR [9572556] (imputed)	N
1131	chr5	71695917	71695918	rs10036789	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	5q13.2	intergenic	rs10036789-C	0.5391	1E-17		0.0163	[0.013-0.02] unit decrease	Affymetrix [18391927] (imputed)	N
1131	chr5	71695917	71695918	rs10036789	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	5q13.2	PTCD2	rs10036789-C	0.539573	6E-9		0.0115569	[0.0077-0.0155] unit increase	Affymetrix [NR] (imputed)	N
1131	chr5	71695917	71695918	rs10036789	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (childhood onset)	9,433 British ancestry cases, 318,237 British ancestry controls	NA	5q13.2	PTCD2, ZNF366	rs10036789-G	0.46	5E-8		1.085	[1.054-1.117]	Affymetrix [10894596] (imputed)	N
1131	chr5	71695917	71695918	rs10036789	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Respiratory diseases	approximately 459,000 European ancestry individuals	NA	5q13.2		rs10036789-?	NR	8E-8				NR [~ 8900000] (imputed)	N
1131	chr5	71695917	71695918	rs10036789	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Intraocular pressure	133,492 European ancestry individuals	NA	5q13.2	PTCD2	rs10036789-?	NR	7E-9		0.0741	[0.049-0.099] unit increase	Affymetrix, Illumina [up to 40000000] (imputed)	N
1131	chr5	71695917	71695918	rs10036789	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	5q13.2	PTCD2	rs10036789-C	0.536	8E-10		0.079	[0.054-0.104] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1131	chr5	71695917	71695918	rs10036789	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	5q13.2	PTCD2, ZNF366	rs10036789-C	0.5366	3E-11		0.094	[0.066-0.122] unit increase	Affymetrix [~ 11900000] (imputed)	N
1132	chr5	71708697	71708698	rs7730838	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	5q13.2	MAP1B, MRPS27, PTCD2, ZNF366	rs7730838-?		1E-12				Affymetrix, Illumina [NR] (imputed)	N
1132	chr5	71716927	71716928	rs10515148	17903296	Kiel DP	2007-09-19	BMC Med Genet	Genome-wide association with bone mass and geometry in the Framingham Heart Study.	Hip geometry	Up to 1,094 individuals from 241 families	NA	5q13.2	ZNF366	rs10515148-?	NR	6E-7	(NeckZ1rf)			Affymetrix [70897]	N
1132	chr5	71725911	71725912	rs4703877	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	5q13.2		rs4703877-?	NR	7E-8				NR [~ 8900000] (imputed)	N
1132	chr5	71727921	71727922	rs2338222	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	5q13.2	ZNF366	rs2338222-G	0.546522	3E-14		0.00179752	[0.0013-0.0023] unit increase	Affymetrix [13995440] (imputed)	N
1132	chr5	71728413	71728414	rs2338223	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small HDL	115,082 European ancestry individuals	NA	5q13.2		rs2338223-G	0.547726	3E-8		0.0230132	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
1132	chr5	71728687	71728688	rs2338224	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	5q13.2	intergenic	rs2338224-G	0.8788	1E-11		0.03733984	[0.027-0.048] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1132	chr5	71728687	71728688	rs2338224	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	5q13.2	intergenic	rs2338224-G	0.8787	7E-15		0.04273679	[0.032-0.054] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1132	chr5	71728687	71728688	rs2338224	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	5q13.2	intergenic	rs2338224-G	0.8787	3E-14		0.04190114	[0.031-0.053] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1132	chr5	71728687	71728688	rs2338224	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	5q13.2	intergenic	rs2338224-G	0.8787	3E-14		0.0417581	[0.031-0.053] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1132	chr5	71728687	71728688	rs2338224	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	5q13.2	intergenic	rs2338224-G	0.8787	7E-16		0.04447183	[0.034-0.055] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1132	chr5	71728687	71728688	rs2338224	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	5q13.2	intergenic	rs2338224-G	0.8787	1E-14		0.0425276	[0.032-0.053] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1132	chr5	71729220	71729221	rs12054750	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	5q13.2	PTCD2, ZNF366	rs12054750-G	0.5438	2E-10		0.0878	[0.06-0.115] unit increase	Affymetrix [~ 11900000] (imputed)	N
1132	chr5	71741093	71741094	rs6452473	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	5q13.2		rs6452473-G	NR	4E-16		0.0278	[0.021-0.034] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
1132	chr5	71741093	71741094	rs6452473	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	5q13.2	ZNF366	rs6452473-T	0.122612	8E-14		0.025926368	[0.019-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
1132	chr5	71741380	71741381	rs7729012	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	5q13.2	NR	rs7729012-G	NR	4E-9		0.0214	[0.014-0.028] unit decrease	Affymetrix [9000000] (imputed)	N
1132	chr5	71741380	71741381	rs7729012	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	5q13.2	NR	rs7729012-G	NR	2E-15		0.0301	[0.023-0.038] unit decrease	Affymetrix [9000000] (imputed)	N
1132	chr5	71741850	71741851	rs4703881	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q13.2	NR	rs4703881-A	0.894852	4E-36				Affymetrix, Illumina [24649327] (imputed)	N
1132	chr5	71741850	71741851	rs4703881	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	5q13.2	NR	rs4703881-A	0.878682	7E-38		0.03619	[0.031-0.042] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1132	chr5	71742178	71742179	rs6452474	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	5q13.2		rs6452474-T	NR	6E-29		0.0396	[0.033-0.046] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
1132	chr5	71742621	71742622	rs6859727	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q13.2	NR	rs6859727-C	0.884995	1E-40				Affymetrix, Illumina [23114412] (imputed)	N
1132	chr5	71742621	71742622	rs6859727	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	5q13.2	NR	rs6859727-C	0.878025	4E-43		0.04036	[0.035-0.046] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
1132	chr5	71745411	71745412	rs10942300	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	5q13.2	ZNF366	rs10942300-T	0.880317	2E-21		0.032448683	[0.026-0.039] unit decrease	Affymetrix [93095623] (imputed)	N
1132	chr5	71745411	71745412	rs10942300	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	5q13.2	ZNF366	rs10942300-T	0.880327	5E-17		0.029629355	[0.023-0.037] unit increase	Affymetrix [93095623] (imputed)	N
1132	chr5	71748623	71748624	rs4703890	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	5q13.2		rs4703890-A	NR	9E-23		0.0341	[0.027-0.041] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1132	chr5	71748623	71748624	rs4703890	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	5q13.2	ZNF366	rs4703890-A	0.881628	4E-28		0.037605938	[0.031-0.044] unit decrease	Affymetrix [93095623] (imputed)	N
1132	chr5	71748623	71748624	rs4703890	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	5q13.2	ZNF366	rs4703890-A	0.881646	1E-24		0.036479767	[0.03-0.043] unit decrease	Affymetrix [93095623] (imputed)	N
1132	chr5	71748623	71748624	rs4703890	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q13.2	NR	rs4703890-A	0.89016	2E-25				Affymetrix, Illumina [23467995] (imputed)	N
1132	chr5	71748623	71748624	rs4703890	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	5q13.2		rs4703890-?	NR	2E-26				NR [~ 8900000] (imputed)	N
1132	chr5	71749093	71749094	rs2338021	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	5q13.2	NR	rs2338021-C	0.879688	4E-28		0.031703	[0.026-0.037] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1132	chr5	71756669	71756670	rs2278600	30891314	Saad MN	2019-01-18	J Adv Res	Studying the effects of haplotype partitioning methods on the RA-associated genomic results from the North American Rheumatoid Arthritis Consortium (NARAC) dataset.	Rheumatoid arthritis	868 European ancestry cases, 1,194 European ancestry controls	NA	5q13.2	ZNF366	rs2278600-G	0.865	3E-10				NR [509413]	N
1132	chr5	71758501	71758502	rs10474066	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	5q13.2	ZNF366	rs10474066-C	NR	6E-9		0.0172752	[0.011-0.023] unit decrease	Affymetrix [321114] (imputed)	N
1132	chr5	71758501	71758502	rs10474066	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	5q13.2	ZNF366	rs10474066-C	0.362421	9E-12		0.01641269	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1132	chr5	71758501	71758502	rs10474066	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	5q13.2	ZNF366	rs10474066-C	0.362418	9E-14		0.017877726	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1132	chr5	71758501	71758502	rs10474066	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	5q13.2	NR	rs10474066-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
1132	chr5	71760634	71760635	rs141028968	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	5q13.2		rs141028968-T	NR	6E-9		0.1096	[0.073-0.146] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
1132	chr5	71762543	71762544	rs4703904	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	5q13.2	ZNF366	rs4703904-A	0.4948	4E-10		0.02256036	[0.015-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1132	chr5	71765228	71765229	rs6885144	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	5q13.2	ZNF366	rs6885144-T	0.198482	5E-9		0.016626537	[0.011-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1132	chr5	71780032	71780033	rs11952819	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	5q13.2	ZNF366	rs11952819-T	0.2763	7E-9		5.795	[NR] z score decrease	Affymetrix, Illumina [~ 11000000] (imputed)	N
1132	chr5	71783429	71783430	rs116159540	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q13.2	NR	rs116159540-G	0.01045	3E-8	(PON1)	0.1932	NR unit increase	Illumina [1671387] (imputed)	N
1132	chr5	71783991	71783992	rs10462395	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	5q13.2	ZNF366	rs10462395-A	0.801266	5E-10		0.0144187	[0.0099-0.019] unit decrease	NR [13737936] (imputed)	N
1132	chr5	71804809	71804810	rs17392871	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	5q13.2	NR	rs17392871-C	NR	3E-12		0.0305	[0.022-0.039] unit increase	Affymetrix [9000000] (imputed)	N
1132	chr5	71804809	71804810	rs17392871	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	5q13.2	NR	rs17392871-C	NR	4E-12		0.029	[0.021-0.037] unit decrease	Affymetrix [9000000] (imputed)	N
1132	chr5	71809246	71809247	rs246565	30571770	Arnau-Soler A	2018-12-20	PLoS One	Genome-wide interaction study of a proxy for stress-sensitivity and its prediction of major depressive disorder.	Stress sensitivity (neuroticism score x major depressive disorder status interaction)	9,844 European ancestry cases, 20,403 European ancestry controls	NA	5q13.2	ZNF366	rs246565-A	NR	3E-6		4.684	NR z score decrease	Affymetrix [at least 557813] (imputed)	N
1132	chr5	71810245	71810246	rs246562	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	5q13.2		rs246562-?	NR	5E-9		0.0153251	[0.01-0.021] unit decrease	Affymetrix [20259828] (imputed)	N
1133	chr5	71833048	71833049	rs426975	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	5q13.2		rs426975-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1133	chr5	71848319	71848320	rs34470922	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	5q13.2		rs34470922-C	NR	2E-9		0.031	[0.021-0.041] unit decrease	Affymetrix, Illumina [20536134] (imputed)	N
1133	chr5	71849806	71849807	rs71628040	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	5q13.2		rs71628040-C	NR	3E-9		0.0306	[0.021-0.041] unit decrease	Affymetrix, Illumina [20521447] (imputed)	N
1133	chr5	71863335	71863336	rs33415	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	5q13.2	NR	rs33415-?	NR	3E-6		0.0082402	[0.0048-0.0117] unit increase	Affymetrix [805426] (imputed)	N
1133	chr5	71880513	71880514	rs42775	34062886	Nazarian A	2021-05-01	Genes (Basel)	Genome-Wide Analysis of Sex Disparities in the Genetic Architecture of Lung and Colorectal Cancers.	Lung cancer	237 European ancestry female cases, 220 European ancestry male cases, 8,354 European ancestry female controls, 6,278 European ancestry male controls	NA	5q13.2	LINC02056	rs42775-T	0.325	5E-6	(Female)	1.561	[1.29-1.83]	NR [up to 1668434] (imputed)	N
1133	chr5	71890186	71890187	rs246628	32989287	Cuellar-Partida G	2020-09-28	Nat Hum Behav	Genome-wide association study identifies 48 common genetic variants associated with handedness.	Left-handedness	1,766,671 European ancestry individuals	NA	5q13.2	LINC02056	rs246628-C	0.407	1E-8		1.0193194	[NR]	Illumina [12493444] (imputed)	N
1133	chr5	71894671	71894672	rs62360619	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota (beta diversity)	858 Metropolitan French ancestry individuals	NA	5q13.2	NR	rs62360619-G	0.101	9E-7	(Bray-Curtis metric)	4.7759914	NR z-score increase	Illumina [5293637] (imputed)	N
1133	chr5	71925616	71925617	rs79702404	27397699	Pei YF	2016-07-07	Bone	Genome-wide association meta-analyses identified 1q43 and 2q32.2 for hip Ward's triangle areal bone mineral density.	Bone mineral density (Ward's triangle area)	4,305 European ancestry individuals,1,579 Chinese Han ancestry individuals, 845 African-American individuals, 446 Hispanic individuals		5q13.2	ZNF366	rs79702404-C	NR	2E-6		0.1	[NR] unit decrease	Affymetrix, Illumina [at least 9551331] (imputed)	N
1133	chr5	71935332	71935332	rs759847366	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		LINC02056	rs759847366-?	NR	6E-13		2.55005	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1133	chr5	71953628	71953629	rs2925677	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	5q13.2	ZNF366	rs2925677-C	0.787318	1E-13		0.0189203	[0.014-0.024] unit increase	Affymetrix [NR] (imputed)	N
1133	chr5	71953628	71953629	rs2925677	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	5q13.2	ZNF366	rs2925677-C	0.787303	4E-15		0.0199079	[0.015-0.025] unit increase	Affymetrix [NR] (imputed)	N
1133	chr5	71953628	71953629	rs2925677	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	5q13.2	intergenic	rs2925677-?	NR	4E-14		0.0236	[0.018-0.029] unit decrease	Affymetrix [5701386] (imputed)	N
1133	chr5	71957317	71957318	rs35585881	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	5q13.2		rs35585881-A	NR	1E-8		0.0201	[0.013-0.027] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
1133	chr5	71957317	71957318	rs35585881	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q13.2	NR	rs35585881-A	0.0878128	7E-15				Affymetrix, Illumina [20825802] (imputed)	N
1133	chr5	71957317	71957318	rs35585881	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	5q13.2		rs35585881-?	NR	4E-13				NR [~ 8900000] (imputed)	N
1134	chr5	71978425	71978426	rs3010256	32152699	Nudel R	2020-03-09	Hum Genet	A large population-based investigation into the genetics of susceptibility to gastrointestinal infections and the link between gastrointestinal infections and mental illness.	Gastrointestinal infection	7,197 Danish ancestry cases, 37,062 Danish ancestry controls	NA	5q13.2	NR	rs3010256-T	NR	2E-6		1.3351135	[1.22-1.45]	Illumina [11600722] (imputed)	N
1134	chr5	72010300	72010301	rs3010239	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	5q13.2	NR	rs3010239-G	0.790123	2E-21		0.022256	[0.018-0.027] unit increase	Affymetrix [15000001]	N
1134	chr5	72014568	72014569	rs3010276	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	5q13.2	CTC-347C20.1	rs3010276-A	0.1966	2E-8		0.0148	[0.0097-0.0199] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1134	chr5	72014568	72014569	rs3010276	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	5q13.2	CTC-347C20.1	rs3010276-A	0.1966	4E-8		0.0145	[0.0094-0.0196] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1134	chr5	72018023	72018024	rs3010273	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	5q13.2		rs3010273-G	NR	7E-13		0.0168	[0.012-0.021] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
1134	chr5	72046101	72046101	rs36009521	35023831	Chong M	2022-01-13	Elife	GWAS and ExWAS of blood Mitochondrial DNA copy number identifies 71 loci and highlights a potential causal role in dementia.	Mitochondrial DNA copy number	395,718 British, Irish, Other White, South Asian, African ancestry individuals	NA	5q13.2	NR	rs36009521-TA	0.242812	6E-9		0.0181	[0.012-0.024] unit increase	Affymetrix [23037915] (imputed)	N
1134	chr5	72052513	72052514	rs34919293	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	5q13.2		rs34919293-T	NR	1E-8		0.0105	[0.007-0.014] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
1134	chr5	72062249	72062261	rs377237473	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	5q13.2	NR	rs377237473-T	NR	2E-9		0.0217	[0.015-0.029] unit decrease	Affymetrix [9000000] (imputed)	N
1134	chr5	72071071	72071072	rs2663071	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	5q13.2		rs2663071-A	NR	2E-10		0.0134	[0.0093-0.0175] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
1134	chr5	72073171	72073172	rs2338793	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	5q13.2		rs2338793-G	NR	8E-33		0.0316	[0.027-0.037] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1134	chr5	72088605	72088605	rs397741132	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	5q13.2	intergenic	rs397741132-CTT		1E-13		0.018	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
1135	chr5	72091000	72091001	rs6896898	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q13.2	NR	rs6896898-G	0.29983	3E-13				Affymetrix, Illumina [24558453] (imputed)	N
1135	chr5	72091000	72091001	rs6896898	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	5q13.2	NR	rs6896898-G	0.313051	3E-13		0.014451	[0.011-0.018] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
1135	chr5	72097350	72097351	rs4703589	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	5q13.2		rs4703589-C	NR	2E-8		0.0093	[0.0062-0.0124] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
1135	chr5	72097350	72097351	rs4703589	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	5q13.2	NR	rs4703589-C	0.532652	3E-13		0.014451	[0.011-0.018] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
1135	chr5	72097350	72097351	rs4703589	32390946	Liu L	2020-04-22	Front Endocrinol (Lausanne)	Twelve New Genomic Loci Associated With Bone Mineral Density.	Total body bone mineral density (MTAG)	66,628 individuals	NA	5q13.2	NR	rs4703589-T	0.47	1E-6		0.02	[0.012-0.028] unit increase	Affymetrix, Illumina [7369691] (imputed)	N
1135	chr5	72097350	72097351	rs4703589	32390946	Liu L	2020-04-22	Front Endocrinol (Lausanne)	Twelve New Genomic Loci Associated With Bone Mineral Density.	Heel bone mineral density (MTAG)	426,824 individuals	NA	5q13.2	NR	rs4703589-T	0.47	5E-8		0.01	[0.0061-0.0139] unit increase	NR [7369691] (imputed)	N
1135	chr5	72100967	72100968	rs10066265	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	5q13.2		rs10066265-G	0.857	4E-13				Affymetrix [10369434] (imputed)	N
1135	chr5	72104414	72104415	rs11747786	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q13.2	NR	rs11747786-A	0.516718	2E-12				Affymetrix, Illumina [19872809] (imputed)	N
1135	chr5	72104414	72104415	rs11747786	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	5q13.2		rs11747786-?	NR	4E-12				NR [~ 8900000] (imputed)	N
1135	chr5	72112420	72112421	rs34648	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	5q13.2		rs34648-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1135	chr5	72128766	72128767	rs266428	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	5q13.2	TNPO1	rs266428-A	NR	4E-12		0.0268684	[0.018-0.035] unit decrease	Affymetrix [16832071] (imputed)	N
1135	chr5	72142222	72142222	rs753811001	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Albumin levels	115,064 European ancestry individuals	NA	5q13.2		rs753811001-CGTT,rs753811001-CGTT	0.464078	1E-21		0.0394909	[0.031-0.048] unit increase	NR [11722792] (imputed)	N
1135	chr5	72142222	72142222	rs753811001	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Albumin levels	115,064 European ancestry individuals	NA	5q13.2		rs753811001-CGTT,rs753811001-CGTT	0.464078	1E-21		0.0394909	[0.031-0.048] unit increase	NR [11722792] (imputed)	N
1135	chr5	72144004	72144005	rs34651	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	5q13.2		rs34651-T	0.84841	3E-11		0.0316031	[0.022-0.041] unit increase	Illumina [13478928] (imputed)	N
1135	chr5	72144004	72144005	rs34651	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	5q13.2		rs34651-T	NR	1E-19		0.0303	[0.024-0.037] unit increase	Affymetrix, Illumina [20536605] (imputed)	N
1135	chr5	72144004	72144005	rs34651	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	5q13.2		rs34651-T	NR	3E-18		0.0238	[0.019-0.029] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
1135	chr5	72144004	72144005	rs34651	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	5q13.2		rs34651-T	NR	3E-29		0.0234	[0.019-0.028] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1135	chr5	72144004	72144005	rs34651	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	5q13.2		rs34651-C	0.081	9E-18				Affymetrix [10369434] (imputed)	N
1135	chr5	72144004	72144005	rs34651	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	5q13.2	TNPO1	rs34651-T	0.9186197	1E-42		0.05605365	[0.048-0.064] unit decrease	Affymetrix [93095623] (imputed)	N
1135	chr5	72144004	72144005	rs34651	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	5q13.2	TNPO1	rs34651-T	0.9189063	9E-22		0.04012266	[0.032-0.048] unit increase	Affymetrix [93095623] (imputed)	N
1135	chr5	72144004	72144005	rs34651	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	5q13.2	TNPO1	rs34651-T	0.9189037	3E-28		0.04608722	[0.038-0.054] unit decrease	Affymetrix [93095623] (imputed)	N
1135	chr5	72144004	72144005	rs34651	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	5q13.2	TNPO1	rs34651-C	0.9185803	3E-28		0.0410739	[0.033-0.049] unit increase	Affymetrix [93095623] (imputed)	N
1135	chr5	72144004	72144005	rs34651	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	5q13.2	TNPO1	rs34651-T	0.9185552	6E-15		0.03169384	[0.024-0.04] unit increase	Affymetrix [93095623] (imputed)	N
1135	chr5	72144004	72144005	rs34651	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	5q13.2	TNPO1	rs34651-T	0.9185931	2E-17		0.0345131	[0.027-0.042] unit increase	Affymetrix [93095623] (imputed)	N
1135	chr5	72144004	72144005	rs34651	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q13.2	NR	rs34651-C	0.0815163	4E-45				Affymetrix, Illumina [22063850] (imputed)	N
1135	chr5	72144004	72144005	rs34651	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	5q13.2	NR	rs34651-C	0.08053	6E-47		0.050103	[0.043-0.057] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
1135	chr5	72144004	72144005	rs34651	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q13.2	NR	rs34651-T	0.909599	2E-40				Affymetrix, Illumina [24588908] (imputed)	N
1135	chr5	72144004	72144005	rs34651	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	5q13.2	NR	rs34651-T	0.919843	2E-36		0.042828	[0.036-0.049] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1135	chr5	72144004	72144005	rs34651	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q13.2	NR	rs34651-C	0.0808203	8E-48				Affymetrix, Illumina [17210439] (imputed)	N
1135	chr5	72144004	72144005	rs34651	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	5q13.2	NR	rs34651-C	0.0809	7E-51		0.053084	[0.046-0.06] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1135	chr5	72144004	72144005	rs34651	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q13.2	NR	rs34651-T	0.908847	3E-32				Affymetrix, Illumina [21126107] (imputed)	N
1135	chr5	72144004	72144005	rs34651	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	5q13.2	NR	rs34651-T	0.918904	6E-29		0.041235	[0.034-0.048] SD unit increase	Affymetrix, Illumina [50282193] (imputed)	N
1135	chr5	72144004	72144005	rs34651	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	5q13.2	NR	rs34651-T	0.918933	1E-17		0.03033	[0.023-0.037] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
1135	chr5	72144004	72144005	rs34651	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q13.2	NR	rs34651-T	0.909521	1E-30				Affymetrix, Illumina [24653286] (imputed)	N
1135	chr5	72144004	72144005	rs34651	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	5q13.2	NR	rs34651-T	0.919659	4E-28		0.037673	[0.031-0.044] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
1135	chr5	72144004	72144005	rs34651	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	5q13.2	NR	rs34651-T	0.9186455	9E-16		0.0115031	[0.0085-0.0145] unit increase	Affymetrix [16582909] (imputed)	N
1135	chr5	72144004	72144005	rs34651	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	5q13.2	NR	rs34651-T	0.9179651	3E-8		0.0113884	[0.0069-0.0158] unit increase	Affymetrix [16585854] (imputed)	N
1135	chr5	72144004	72144005	rs34651	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	5q13.2	NR	rs34651-T	0.91937	7E-9		0.0117095	[0.0075-0.0159] unit increase	Affymetrix [16582621] (imputed)	N
1135	chr5	72144004	72144005	rs34651	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	5q13.2	NR	rs34651-T	0.9186455	4E-9		0.00928572	[0.0059-0.0126] unit increase	Affymetrix [16582965] (imputed)	N
1135	chr5	72144004	72144005	rs34651	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	5q13.2	NR	rs34651-T	0.91937	3E-6		0.00982614	[0.0054-0.0143] unit increase	Affymetrix [16582614] (imputed)	N
1135	chr5	72144004	72144005	rs34651	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	5q13.2	TNPO1	rs34651-C	0.08	3E-8		1.11	[1.07-1.15]	Affymetrix, Illumina [6224355] (imputed)	N
1135	chr5	72144004	72144005	rs34651	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	5q13.2		rs34651-?	NR	2E-38				NR [~ 8900000] (imputed)	N
1135	chr5	72144004	72144005	rs34651	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5q13.2		rs34651-?	NR	2E-35				NR [~ 8900000] (imputed)	N
1135	chr5	72144004	72144005	rs34651	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	5q13.2	TNPO1	rs34651-T	0.9205	4E-16		0.05507057	[0.042-0.068] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1135	chr5	72154568	72154569	rs34664	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin concentration	108,728 Japanese ancestry individuals	NA	5q13.2	TNPO1	rs34664-?	NR	5E-9		0.03327	[0.022-0.044] unit increase novel	Illumina [6108953] (imputed)	N
1135	chr5	72158324	72158324	rs11391014	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	5q13.2		rs11391014-CT	NR	2E-10		0.0157	[0.011-0.021] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
1135	chr5	72158324	72158324	rs11391014	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	5q13.2	TNPO1	rs11391014-CT	0.673289	3E-20		0.022996852	[0.018-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1135	chr5	72159178	72159179	rs4704043	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	5q13.2	TNPO1	rs4704043-C	0.286421	7E-17		0.00478629	[0.0037-0.0059] unit decrease	Affymetrix [13995440] (imputed)	N
1135	chr5	72162997	72162997	rs11409581	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	5q13.2	TNPO1	rs11409581-GA	0.849	9E-10		0.031887	[0.022-0.042] unit increase	Affymetrix [~ 2500000] (imputed)	N
1135	chr5	72179573	72179574	rs7716161	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	5q13.2		rs7716161-C	0.1696	3E-8		0.0105	[0.0068-0.0142] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1135	chr5	72179573	72179574	rs7716161	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	5q13.2	Intergenic	rs7716161-C	0.1696	8E-9	(MTAG)	0.0102	[0.0067-0.0137] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1135	chr5	72180702	72180703	rs13358767	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q13.2	NR	rs13358767-G	0.277288	3E-13				Affymetrix, Illumina [23472807] (imputed)	N
1135	chr5	72180702	72180703	rs13358767	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	5q13.2	TNPO1	rs13358767-G	0.285135	2E-8		0.057781752	[0.038-0.078] unit decrease	Affymetrix [7288503] (imputed)	N
1135	chr5	72196166	72196167	rs72764821	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	5q13.2	TNPO1	rs72764821-G	0.155705	4E-9		0.018589566	[0.012-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1135	chr5	72200344	72200345	rs155512	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	5q13.2		rs155512-A	NR	5E-70		0.0366	[0.032-0.041] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
1135	chr5	72200625	72200626	rs250517	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	5q13.2	TNPO1	rs250517-?	NR	1E-15		0.030911904	[0.023-0.038] unit decrease	Illumina [27896057] (imputed)	N
1135	chr5	72201057	72201058	rs250518	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin concentration	172,851 European ancestry individuals	NA	5q13.2	TNPO1	rs250518-A	0.6827	6E-15		0.02909346	[0.022-0.036] unit increase	Affymetrix [~ 2500000] (imputed)	N
1135	chr5	72203695	72203696	rs34956	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	5q13.2		rs34956-C	0.834999	5E-12		0.0187979	[0.013-0.024] unit decrease	Illumina [13479295] (imputed)	N
1135	chr5	72204023	72204024	rs34957	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	120,539 East Asian ancestry individuals	NA	5q13.2		rs34957-G	0.455007	5E-13		0.0274422	[0.02-0.035] unit decrease	Illumina [13474682] (imputed)	N
1136	chr5	72234188	72234189	rs62360691	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	5q13.2	NR	rs62360691-G	NR	3E-15		0.0248	[0.019-0.031] unit increase	Affymetrix [9000000] (imputed)	N
1136	chr5	72234188	72234189	rs62360691	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	5q13.2	NR	rs62360691-G	NR	4E-15		0.0259	[0.019-0.032] unit increase	Affymetrix [9000000] (imputed)	N
1136	chr5	72234188	72234189	rs62360691	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	5q13.2	NR	rs62360691-G	NR	4E-9		0.0185	[0.012-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
1136	chr5	72235092	72235092	rs35841312	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	5q13.2	NR	rs35841312-GA	0.3189	2E-15		0.001835	[0.0014-0.0023] unit increase	Affymetrix [NR] (imputed)	N
1136	chr5	72236002	72236003	rs155511	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	5q13.2		rs155511-?	NR	2E-9		0.0125842	[0.0085-0.0167] unit increase	Affymetrix [20259828] (imputed)	N
1136	chr5	72236767	72236768	rs268794	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	5q13.2		rs268794-T	0.150209	9E-18		0.026965817	[0.021-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
1136	chr5	72236767	72236768	rs268794	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	5q13.2		rs268794-T	0.15015	5E-14		0.023808079	[0.018-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
1136	chr5	72236767	72236768	rs268794	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum albumin levels	102,223 Japanese ancestry individuals	NA	5q13.2	TNPO1, FCHO2	rs268794-?	NR	1E-8		0.02689	[0.018-0.036] unit increase	Illumina [6108953] (imputed)	N
1136	chr5	72242033	72242033	rs369232595	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	5q13.2		rs369232595-AT	0.422919	5E-11		0.015647849	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1136	chr5	72246281	72246282	rs2666747	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	5q13.2		rs2666747-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1136	chr5	72248718	72248719	rs2432236	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	5q13.2	FCHO2	rs2432236-G	0.458358	3E-11		0.0123292	[0.0087-0.016] unit increase	NR [13737936] (imputed)	N
1136	chr5	72252474	72252475	rs7713398	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Non-albumin protein levels	98,538 Japanese ancestry individuals	NA	5q13.2	FCHO2	rs7713398-?	NR	4E-28		0.04954	[0.041-0.058] unit increase novel	Illumina [6108953] (imputed)	N
1136	chr5	72252474	72252475	rs7713398	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Albumin-globulin ratio	98,626 Japanese ancestry individuals	NA	5q13.2	FCHO2	rs7713398-?	NR	7E-29		0.05021	[0.041-0.059] unit decrease novel	Illumina [6108953] (imputed)	N
1136	chr5	72255807	72255808	rs2545646	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	5q13.2		rs2545646-T	0.44	3E-16		8.17	z score increase	Affymetrix [9061022] (imputed)	N
1136	chr5	72256433	72256434	rs62360696	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	5q13.2		rs62360696-T	0.31	2E-13		7.35	z score increase	Affymetrix [9061022] (imputed)	N
1136	chr5	72256433	72256434	rs62360696	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	5q13.2	NR	rs62360696-T	0.3204	6E-14				NR [9056863] (imputed)	N
1136	chr5	72256433	72256434	rs62360696	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q13.2	NR	rs62360696-T	0.322798	3E-12				Affymetrix, Illumina [24246363] (imputed)	N
1136	chr5	72268544	72268545	rs62360742	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q13.2	NR	rs62360742-T	0.116193	2E-14				Affymetrix, Illumina [24332387] (imputed)	N
1136	chr5	72268546	72268547	rs150446942	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	150,708 East Asian ancestry individuals	NA	5q13.2	NR	rs150446942-T	0.816626	6E-10		0.036738	[0.025-0.048] SD units decrease	Affymetrix, Illumina [16709798] (imputed)	N
1136	chr5	72277723	72277724	rs258887	35132056	Mitchell BL	2022-02-07	Nat Commun	Genome-wide association meta-analysis identifies 29 new acne susceptibility loci.	acne vulgaris	20,165 European ancestry cases, 595,231 European ancestry controls	NA	5q13.2	NR	rs258887-A	0.5439	3E-8		1.07	[1.04-1.09]	Affymetrix, Illumina [7072771] (imputed)	N
1136	chr5	72277723	72277724	rs258887	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume (adjusted for hypertension)	46,055 European ancestry individuals, 2,469 African American individuals	NA	5q13.2	FCHO2	rs258887-A	0.5405	1E-5		0.0288	[0.016-0.042] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1136	chr5	72277723	72277724	rs258887	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume (adjusted for hypertension)	46,055 European ancestry individuals	NA	5q13.2	FCHO2	rs258887-A	0.5405	2E-6		0.0303	[0.018-0.043] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1136	chr5	72277723	72277724	rs258887	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	48,454 European ancestry individuals	NA	5q13.2	FCHO2	rs258887-A	0.5405	3E-6		0.0294	[0.017-0.042] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1136	chr5	72281314	72281315	rs258888	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Immunoglobulin measurement (zinc sulfate turbidity test)	12,303 Japanese ancestry individuals	NA	5q13.2	FCHO2	rs258888-?	NR	9E-10		0.0793	[0.054-0.105] unit increase	Illumina [6108953] (imputed)	N
1136	chr5	72300462	72300463	rs26578	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	5q13.2	FCHO2	rs26578-A	0.3118	2E-12		0.02708401	[0.02-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
1136	chr5	72305845	72305846	rs258892	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Small cell lung carcinoma	2,664 European ancestry cases,  21,444 European ancestry controls	NA	5q13.2	FCHO2	rs258892-C	0.139422331	5E-6		1.2072699	[1.11347027-1.308971306]	Illumina [10439017] (imputed)	N
1136	chr5	72307764	72307765	rs75599919	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	5q13.2		rs75599919-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1136	chr5	72314263	72314263	rs138958811	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	5q13.2	FCHO2	rs138958811-CT	0.173873	4E-19		0.026214445	[0.02-0.032] unit increase	Affymetrix [93095623] (imputed)	N
1136	chr5	72320402	72320403	rs194491	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	5q13.2	FCHO2	rs194491-T	0.1813	2E-10		0.00206217	[0.0015-0.0027] unit increase	Affymetrix [13995440] (imputed)	N
1136	chr5	72346124	72346125	rs62362194	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	5q13.2	NR	rs62362194-T	NR	4E-8		0.03	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1136	chr5	72346124	72346125	rs62362194	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	5q13.2	NR	rs62362194-T	0.882	9E-6	(EA)	0.027	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1136	chr5	72351061	72351062	rs1200503	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	5q13.2		rs1200503-G	NR	5E-57		0.0304	[0.027-0.034] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
1136	chr5	72351061	72351062	rs1200503	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	150,068 East Asian ancestry individuals	NA	5q13.2		rs1200503-G	0.534917	3E-10		0.0219208	[0.015-0.029] unit decrease	Illumina [13478956] (imputed)	N
1136	chr5	72351061	72351062	rs1200503	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	5q13.2	FCHO2	rs1200503-C	0.53	9E-37		12.7	z-score increase	Affymetrix [4314223] (imputed)	N
1137	chr5	72356904	72356905	rs30535	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	5q13.2	NR	rs30535-A	NR	3E-13		0.0314	[0.023-0.04] unit decrease	Affymetrix [9000000] (imputed)	N
1137	chr5	72356904	72356905	rs30535	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	5q13.2	NR	rs30535-A	NR	1E-12		0.0294	[0.021-0.037] unit decrease	Affymetrix [9000000] (imputed)	N
1137	chr5	72358253	72358254	rs3864261	27043157	Keers R	2016-04-05	Psychother Psychosom	A Genome-Wide Test of the Differential Susceptibility Hypothesis Reveals a Genetic Predictor of Differential Response to Psychological Treatments for Child Anxiety Disorders.	Discordance in emotional problems in monozygotic twins	up to 1,026 child monozygotic twin pairs	NA	5q13.2	FCHO2	rs3864261-?		7E-6		0.2662	[NR] unit increase	Affymetrix [679050]	N
1137	chr5	72361117	72361117	rs140369217	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	5q13.2	FCHO2	rs140369217-AT	0.177907	3E-13		0.0166281	[0.011-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1137	chr5	72362288	72362289	rs1392412	27043157	Keers R	2016-04-05	Psychother Psychosom	A Genome-Wide Test of the Differential Susceptibility Hypothesis Reveals a Genetic Predictor of Differential Response to Psychological Treatments for Child Anxiety Disorders.	Discordance in emotional problems in monozygotic twins	up to 1,026 child monozygotic twin pairs	NA	5q13.2	FCHO2	rs1392412-?		9E-6		0.2631	[NR] unit increase	Affymetrix [679050]	N
1137	chr5	72366225	72366225	rs148067775	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	5q13.2	FCHO2	rs148067775-AT	0.147019	8E-16		0.025685022	[0.019-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
1137	chr5	72367338	72367339	rs571646	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	135,482 East Asian ancestry individuals	NA	5q13.2		rs571646-G	0.837425	3E-9		0.0290085	[0.019-0.039] unit increase	Illumina [13477028] (imputed)	N
1137	chr5	72368090	72368091	rs76895026	34330890	Ip HF	2021-07-30	Transl Psychiatry	Genetic association study of childhood aggression across raters, instruments, and age.	Childhood aggressive behavior	87,485 European ancestry individuals	NA	5q13.2		rs76895026-A	0.058163805	9E-6		0.030725112	[0.017-0.044] unit decrease	Affymetrix, Illumina [up to 7284995] (imputed)	N
1137	chr5	72386783	72386784	rs10462337	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cholelithiasis	26,122 European ancestry cases, 461,431 European ancestry controls, 9,305 East Asian ancestry cases, 168,253 East Asian ancestry controls	NA	5q13.2		rs10462337-T	NR	3E-8		0.0543	[0.035-0.074] unit decrease	Affymetrix, Illumina [25844936] (imputed)	N
1137	chr5	72389758	72389759	rs11286361	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	5q13.2		rs11286361-G	NR	2E-13		0.0195	[0.014-0.025] unit increase	Affymetrix, Illumina [20528270] (imputed)	N
1137	chr5	72395188	72395189	rs628401	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Aspartate aminotransferase levels	134,154 Japanese ancestry individuals	NA	5q13.2	FCHO2, TMEM171	rs628401-?	NR	8E-10		0.02314	[0.016-0.031] unit increase novel	Illumina [6108953] (imputed)	N
1137	chr5	72403452	72403453	rs7733340	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	5q13.2	TNPO1, FCHO2, TMEM171	rs7733340-?	NR	6E-13	(EA)			Affymetrix, Illumina [10537485] (imputed)	N
1137	chr5	72403452	72403453	rs7733340	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	5q13.2	TNPO1, FCHO2, TMEM171	rs7733340-?	NR	3E-12				Affymetrix, Illumina [10537485] (imputed)	N
1137	chr5	72406027	72406028	rs554327	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Aspartate aminotransferase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	5q13.2	FCHO2, TMEM171	rs554327-?		3E-11		0.025	[0.018-0.032] unit increase	Illumina [31500000] (imputed)	N
1137	chr5	72406658	72406659	rs548630	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	5q13.2	TNPO1, FCHO2, TMEM171	rs548630-A	0.46	1E-12	(EA)	0.0182	[0.013-0.023] unit decrease	Affymetrix, Illumina [10537485] (imputed)	N
1137	chr5	72406658	72406659	rs548630	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	5q13.2	FCHO2, TMEM171, TNPO1	rs548630-A	0.47	1E-12		0.018	[0.013-0.023] unit decrease	Affymetrix, Illumina [10537485] (imputed)	N
1137	chr5	72406658	72406659	rs548630	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	Factor VIII levels	25,897 European ancestry individuals, 4,500 African American individuals, 773 Asian ancestry individuals, 1,440 Hispanic individuals	NA	5q13.2	TNPO1, FCHO2, TMEM171	rs548630-A	0.49	2E-10		0.0159	[0.011-0.021] unit decrease	Affymetrix, Illumina [13887196] (imputed)	N
1137	chr5	72406658	72406659	rs548630	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	Factor VIII levels	25,897 European ancestry individuals, 4,500 African American individuals, 773 Asian ancestry individuals, 1,440 Hispanic individuals	NA	5q13.2	TNPO1, FCHO2, TMEM171	rs548630-A	0.46	5E-10	(EA)	0.0169	[0.012-0.022] unit decrease	Affymetrix, Illumina [13887196] (imputed)	N
1137	chr5	72408245	72408246	rs568459	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	5q13.2		rs568459-A	NR	1E-8		0.0531	[0.035-0.071] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1137	chr5	72411799	72411800	rs609659	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	5q13.2	TMEM171	rs609659-A	0.5761	8E-13		0.0138	[0.01-0.018] unit decrease	Affymetrix [18391927] (imputed)	N
1137	chr5	72418308	72418309	rs678393	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	5q13.2	TMEM171	rs678393-G	0.261082	8E-11		0.01672811	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1137	chr5	72418308	72418309	rs678393	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	5q13.2	NR	rs678393-G	0.261711	2E-12		0.015416	[0.011-0.02] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1137	chr5	72419432	72419433	rs151305324	29124443	Yasukochi Y	2017-11-09	Mol Genet Genomics	Identification of CDC42BPG as a novel susceptibility locus for hyperuricemia in a Japanese population.	Serum uric acid levels	5,847 Japanese ancestry individuals	NA	5q13.2	TMEM171	rs151305324-?	9.97606E-5	2E-16				Illumina [~ 244000]	N
1137	chr5	72419432	72419433	rs151305324	29124443	Yasukochi Y	2017-11-09	Mol Genet Genomics	Identification of CDC42BPG as a novel susceptibility locus for hyperuricemia in a Japanese population.	Hyperuricemia	847 Japanese ancestry cases, 4,640 Japanese ancestry controls	972 Japanese ancestry cases, 4,584 Japanese ancestry controls	5q13.2	TMEM171	rs151305324-?	9.97606E-5	2E-16				Illumina [~ 244000]	N
1137	chr5	72419432	72419433	rs151305324	29124443	Yasukochi Y	2017-11-09	Mol Genet Genomics	Identification of CDC42BPG as a novel susceptibility locus for hyperuricemia in a Japanese population.	Creatinine levels	5,636 Japanese ancestry individuals	NA	5q13.2	TMEM171	rs151305324-?	9.65997E-5	1E-10				Illumina [~ 244000]	N
1137	chr5	72420783	72420784	rs66969865	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	5q13.2		rs66969865-?	NR	3E-11				NR [~ 8900000] (imputed)	N
1137	chr5	72420783	72420784	rs66969865	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5q13.2		rs66969865-?	NR	9E-10				NR [~ 8900000] (imputed)	N
1137	chr5	72426084	72426085	rs703873	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	5q13.2	NR	rs703873-A	NR	2E-13		0.0178	[0.013-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
1137	chr5	72426084	72426085	rs703873	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	5q13.2	NR	rs703873-A	NR	5E-40		0.0321	[0.027-0.037] unit decrease	Affymetrix [9000000] (imputed)	N
1137	chr5	72426136	72426137	rs10942549	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	5q13.2	TMEM171	rs10942549-C	0.3007	1E-30		0.0404	[0.034-0.047] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1137	chr5	72426136	72426137	rs10942549	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	5q13.2	TMEM171	rs10942549-C	0.312	2E-22		0.042149	[0.034-0.051] mg/dL decrease	Affymetrix, Illumina [8217339] (imputed)	N
1137	chr5	72426136	72426137	rs10942549	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	5q13.2	NR	rs10942549-C	0.3059	8E-11	(men)	0.0363	[0.025-0.047] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1137	chr5	72426136	72426137	rs10942549	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	5q13.2	NR	rs10942549-C	0.3052	6E-14	(women)	0.038	[0.028-0.048] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1137	chr5	72431481	72431482	rs17632159	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	5q13.2		rs17632159-C	NR	3E-54		0.0299	[0.026-0.034] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
1137	chr5	72431481	72431482	rs17632159	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	5q13.2	NR	rs17632159-C	0.3	6E-59		0.0323	[0.028-0.036] unit decrease	NR [NR]	N
1137	chr5	72431481	72431482	rs17632159	31985003	Boocock J	2020-01-27	Hum Mol Genet	Genomic dissection of 43 serum urate-associated loci provides multiple insights into molecular mechanisms of urate control.	Urate levels	110,238 European ancestry individuals, 21,471 East Asian individuals	NA	5q13.2	TMEM171	rs17632159-G		5E-7		0.031	[0.019-0.043] mg/dl increase	NR [NR] (imputed)	N
1137	chr5	72431481	72431482	rs17632159	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals, at least 88,461 European ancestry individuals	NA	5q13.2	LOC105379030	rs17632159-C	0.342	2E-10	(EA)	0.027142856	[0.019-0.036] unit decrease	Illumina [1986983] (imputed)	N
1137	chr5	72431481	72431482	rs17632159	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals, at least 88,461 European ancestry individuals	NA	5q13.2	LOC105379030	rs17632159-C	0.2877	1E-6	(Japanese)	0.0216	[0.013-0.03] unit decrease	Illumina [1986983] (imputed)	N
1137	chr5	72431481	72431482	rs17632159	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals	at least 101,293 European ancestry individuals	5q13.2	LOC105379030	rs17632159-C	0.2877	1E-6	(Japanese)	0.022	[0.013-0.031] unit decrease	Illumina [5864938] (imputed)	N
1137	chr5	72431481	72431482	rs17632159	23263486	Kottgen A	2012-12-23	Nat Genet	Genome-wide association analyses identify 18 new loci associated with serum urate concentrations.	Urate levels	49,825 European ancestry males, 60,522 European ancestry females	Up to 32,813 European ancestry individuals	5q13.2	TMEM171	rs17632159-C	0.31	4E-11		0.039	[0.027-0.051] mg/dl decrease	Affymetrix, Illumina, Perlegen [2450547] (imputed)	N
1137	chr5	72432035	72432036	rs17663555	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	5q13.2		rs17663555-G	NR	2E-51		0.0305	[0.027-0.034] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
1137	chr5	72432035	72432036	rs17663555	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	5q13.2	LOC105379030	rs17663555-C	0.6814	5E-26		0.0077	[0.0063-0.0091] unit decrease	Affymetrix, Illumina [8176554] (imputed)	N
1137	chr5	72432035	72432036	rs17663555	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Urea levels	20,700 European ancestry individuals	NA	5q13.2	TMEM171, RP11-232L2.2	rs17663555-G	0.302437	6E-11		0.075703	[0.054-0.097] unit increase	Illumina [24961484] (imputed)	N
1137	chr5	72432035	72432036	rs17663555	22797727	Okada Y	2012-07-15	Nat Genet	Meta-analysis identifies multiple loci associated with kidney function-related traits in east Asian populations.	Renal function-related traits (BUN)	39,717 East Asian ancestry individuals	17,461 East Asian ancestry individuals	5q13.2	TMEM171, TMEM174	rs17663555-G	0.34	2E-6		0.004	[0.0024-0.0056] mg/dl increase	Affymetrix, Illumina [2281523] (imputed)	N
1137	chr5	72433991	72433992	rs17663561	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	148,767 East Asian ancestry individuals	NA	5q13.2		rs17663561-T	0.343374	5E-14		0.0266595	[0.02-0.034] unit increase	Illumina [13478792] (imputed)	N
1137	chr5	72441813	72441814	rs62363475	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Blood urea nitrogen levels	139,818 Japanese ancestry individuals	NA	5q13.2	TMEM171, TMEM174	rs62363475-?	NR	1E-11		0.02421	[0.017-0.031] unit increase novel	Illumina [6108953] (imputed)	N
1137	chr5	72445500	72445501	rs520007	33832965	Sandoval-Plata G	2021-04-08	Ann Rheum Dis	Variants in urate transporters, ADH1B, GCKR and MEPE genes associate with transition from asymptomatic hyperuricaemia to gout: results of the first gout versus asymptomatic hyperuricaemia GWAS in Caucasians using data from the UK Biobank.	Gout	7,049 European ancestry cases, 64,424 European ancestry controls	NA	5q13.2	LOC105379030	rs520007-C	0.43	4E-11		1.14	[1.10-1.18]	Affymetrix [710030]	N
1137	chr5	72448743	72448744	rs536229	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	5q13.2	NR	rs536229-A	NR	6E-19		0.0554	[0.043-0.068] unit increase	Affymetrix [9000000] (imputed)	N
1137	chr5	72451151	72451152	rs10059128	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	5q13.2	AC116345.1, RP11-232L2.2, RP11-232L2.1	rs10059128-T	0.199686	5E-17		0.023681413	[0.018-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1137	chr5	72469484	72469485	rs540236234	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Urate levels	437,354 European ancestry individuals	NA	5q13.2		rs540236234-?	NR	3E-15		0.970142	[0.73-1.21] unit decrease	NR [9800000] (imputed)	N
1138	chr5	72502028	72502029	rs12651896	30248107	Wu S	2018-09-24	PLoS Genet	Genome-wide association studies and CRISPR/Cas9-mediated gene editing identify regulatory variants influencing eyebrow thickness in humans.	Eyebrow thickness	2,961 Han Chinese ancestry individuals, 721 Uyghur ancestry individuals, 2,301 Latin American ancestry individuals	4,411 Dutch ancestry individuals	5q13.2	FOXD1	rs12651896-C	NR	3E-13	(East Asian, Hispanic and Other admixed)			Illumina [up to 7224952] (imputed)	N
1138	chr5	72506263	72506264	rs148373370	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	5q13.2	NR	rs148373370-A	NR	5E-6	(GEE model)	1.1872	[0.68-1.7] unit decrease	NR [NR] (imputed)	N
1138	chr5	72518147	72518148	rs10061469	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	5q13.2	NR	rs10061469-A	0.67	1E-6	(EA)	1.0531912		Affymetrix, Illumina [~ 9000000] (imputed)	N
1138	chr5	72539849	72539850	rs34804116	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	5q13.2	intergenic	rs34804116-?		6E-6				Illumina [9560910] (imputed)	N
1138	chr5	72539849	72539850	rs34804116	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	5q13.2	RP11-60A8.1	rs34804116-?	NR	3E-10	(subset analysis)			Illumina [130052]	N
1138	chr5	72539849	72539850	rs34804116	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	5q13.2	NR	rs34804116-?	NR	1E-13	(EA)			Affymetrix, Illumina [~ 9000000] (imputed)	N
1138	chr5	72544389	72544390	rs9654415	26926045	Adhikari K	2016-03-01	Nat Commun	A genome-wide association scan in admixed Latin Americans identifies loci influencing facial and scalp hair features.	Eyebrow thickness	2,922 Latin American individuals	NA	5q13.2	BTF3, FCHO2, FOXD1, TMEM171, TMEM174	rs9654415-?	NR	3E-7				Illumina [9143600] (imputed)	N
1138	chr5	72551133	72551134	rs7702331	26926045	Adhikari K	2016-03-01	Nat Commun	A genome-wide association scan in admixed Latin Americans identifies loci influencing facial and scalp hair features.	Monobrow thickness	2,922 Latin American individuals	NA	5q13.2	ANKRA2, BTF3, FCHO2, FOXD1, TMEM171, TMEM174	rs7702331-?	NR	4E-7				Illumina [9143600] (imputed)	N
1138	chr5	72551133	72551134	rs7702331	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Crohn's disease	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls	5q13.2	intergenic	rs7702331-A	0.621	6E-10		1.088	[1.05-1.126]	Affymetrix, Illumina [1230000] (imputed)	N
1138	chr5	72551133	72551134	rs7702331	21102463	Franke A	2010-11-21	Nat Genet	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry trios	5q13.2	intergenic	rs7702331-A	0.6	6E-12		1.12	[1.07-1.17]	Affymetrix, Illumina [953241] (imputed)	N
1138	chr5	72559338	72559339	rs6881396	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Monobrow	69,284 European ancestry individuals	NA	5q13.2	TMEM174, FOXD1	rs6881396-?	NR	7E-35		0.046	[0.054-0.039] unit decrease	Illumina [12039491] (imputed)	N
1138	chr5	72585045	72585046	rs148931311	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-18 levels	3,636 Finnish ancestry individuals	NA	5q13.2	NR	rs148931311-G		9E-6		0.4002	[0.22-0.58] SD units decrease	NR [10700000] (imputed)	N
1138	chr5	72587454	72587455	rs4422515	33491795	Timmer T	2021-01-25	Vox Sang	Genetic determinants of ferritin, haemoglobin levels and haemoglobin trajectories: results from Donor InSight.	Hemoglobin levels	2,649 European ancestry individuals	NA	5q13.2	TMEM174	rs4422515-T	0.6	3E-6		0.08	[0.11-0.04] unit decrease	Affymetrix [7435577] (imputed)	N
1138	chr5	72607980	72607981	rs10805874	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	5q13.2	LOC340090	rs10805874-T	0.305821	7E-23		0.0198408	[0.016-0.024] unit increase	NR [13737936] (imputed)	N
1138	chr5	72607980	72607981	rs10805874	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	5q13.2		rs10805874-?	NR	2E-19				NR [~ 8900000] (imputed)	N
1138	chr5	72607980	72607981	rs10805874	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	5q13.2		rs10805874-?	NR	3E-21		0.0213493	[0.017-0.026] unit increase	Affymetrix [20259828] (imputed)	N
1139	chr5	72647517	72647518	rs2972207	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	5q13.2	FOXD1	rs2972207-T	0.1999	4E-9		0.1618	[0.11-0.22] mmHg increase	Affymetrix [NR] (imputed)	N
1139	chr5	72654303	72654304	rs4443403	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	5q13.2	FOXD1	rs4443403-T	0.9008	3E-10		0.1832	[0.13-0.24] unit decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1139	chr5	72658436	72658437	rs2972210	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5q13.2		rs2972210-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1139	chr5	72691119	72691120	rs4418079	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	5q13.2	LINC02230, FOXD1	rs4418079-?	NR	8E-9		0.564	[0.36-0.77] unit decrease	Affymetrix [11100000] (imputed)	N
1140	chr5	72745040	72745041	rs11739808	31164008	Mullins N	2019-06-05	Am J Psychiatry	GWAS of Suicide Attempt in Psychiatric Disorders and Association With Major Depression Polygenic Risk Scores.	Suicide attempts in schizophrenia	1,683 European ancestry attempters, 2,946 European ancestry nonattempters	NA	5q13.2	NR	rs11739808-A	0.02	9E-6		2.3	1.59-3.31	NR [8814543] (imputed)	N
1140	chr5	72837603	72837604	rs143334311	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD33 on Immature Myeloid-Derived Suppressor Cells	1,554 Sardinian (founder/genetic isolate) ancestry individuals	NA	5q13.2		rs143334311-G	0.0134	3E-9		0.9373	[0.63-1.25] unit increase	Illumina [16934262] (imputed)	N
1140	chr5	72863284	72863285	rs57497378	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q13.2	NR	rs57497378-G	0.0122	8E-11	(SDHB)	0.1717	NR unit increase	Illumina [1671387] (imputed)	N
1140	chr5	72863284	72863285	rs57497378	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q13.2	NR	rs57497378-G	0.0122	7E-9	(VDAC2)	0.06507	NR unit increase	Illumina [1671387] (imputed)	N
1140	chr5	72863284	72863285	rs57497378	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q13.2	NR	rs57497378-G	0.0122	5E-10	(VDAC1)	0.2651	NR unit increase	Illumina [1671387] (imputed)	N
1140	chr5	72863284	72863285	rs57497378	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q13.2	NR	rs57497378-G	0.0122	3E-9	(SLC25A5)	0.08512	NR unit increase	Illumina [1671387] (imputed)	N
1140	chr5	72863284	72863285	rs57497378	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q13.2	NR	rs57497378-G	0.0122	2E-8	(SLC25A13)	0.2885	NR unit increase	Illumina [1671387] (imputed)	N
1140	chr5	72863284	72863285	rs57497378	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q13.2	NR	rs57497378-G	0.0122	2E-8	(HADHB)	0.5474	NR unit increase	Illumina [1671387] (imputed)	N
1140	chr5	72863284	72863285	rs57497378	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q13.2	NR	rs57497378-G	0.0122	2E-10	(SDHA)	0.2335	NR unit increase	Illumina [1671387] (imputed)	N
1140	chr5	72863284	72863285	rs57497378	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q13.2	NR	rs57497378-G	0.0122	1E-8	(ETFDH)	0.1758	NR unit increase	Illumina [1671387] (imputed)	N
1141	chr5	72888279	72888280	rs2544654	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	5q13.2	AC008387.1	rs2544654-G	0.284764	5E-9		0.0127698	[0.0085-0.017] unit decrease	Affymetrix [NR] (imputed)	N
1141	chr5	72911075	72911076	rs2544648	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	5q13.2	NR	rs2544648-G	NR	5E-9		0.0162	[0.011-0.022] unit increase	Affymetrix [9000000] (imputed)	N
1141	chr5	72917438	72917439	rs888655	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	5q13.2	ARHGEF28	rs888655-G	0.720309	8E-14		0.018630167	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1141	chr5	72922646	72922647	rs2703636	34108613	Ivarsdottir EV	2021-06-09	Commun Biol	The genetic architecture of age-related hearing impairment revealed by genome-wide association analysis.	Age-related hearing impairment	121,934 European ancestry cases, 591,699 European ancestry controls	NA	5q13.2	ARHGEF28	rs2703636-C	27.14	5E-12	(additive)	1.04	[NR]	Affymetrix, Illumina [46900000] (imputed)	N
1141	chr5	72922646	72922647	rs2703636	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	5q13.2	ARHGEF28	rs2703636-T	0.72387	2E-10		0.01596684	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1141	chr5	72922646	72922647	rs2703636	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	5q13.2	ARHGEF28	rs2703636-T	0.723882	8E-12		0.017189125	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1141	chr5	72922646	72922647	rs2703636	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	5q13.2	ARHGEF28	rs2703636-T	0.723842	3E-9		0.014822779	[0.0099-0.0197] unit increase	Affymetrix [93095623] (imputed)	N
1141	chr5	72922646	72922647	rs2703636	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	5q13.2	ARHGEF28	rs2703636-T	0.723849	2E-10		0.015851697	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1141	chr5	72926513	72926514	rs6881956	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	5q13.2	ARHGEF28	rs6881956-A	0.2605	3E-9		0.0163	[0.011-0.022] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1141	chr5	72927291	72927292	rs11739158	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	5q13.2	NR	rs11739158-T	0.42789	2E-13		0.00816741	[0.0059-0.0105] unit increase	Affymetrix [16582621] (imputed)	N
1141	chr5	72927291	72927292	rs11739158	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	5q13.2	NR	rs11739158-T	0.42789	2E-12		0.00829379	[0.0059-0.0107] unit increase	Affymetrix [16582614] (imputed)	N
1141	chr5	72947949	72947949	rs34436644	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	5q13.2	NR	rs34436644-GTAT	0.42486100000000004	5E-11		0.00574563	[0.0041-0.0074] unit increase	Affymetrix [16582909] (imputed)	N
1141	chr5	72947949	72947949	rs34436644	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	5q13.2	NR	rs34436644-GTAT	0.42486100000000004	3E-11		0.00636804	[0.0045-0.0082] unit increase	Affymetrix [16582965] (imputed)	N
1141	chr5	72970536	72970537	rs12516123	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	5q13.2		rs12516123-G	NR	2E-13		0.0178	[0.013-0.023] unit increase	Affymetrix, Illumina [20529698] (imputed)	N
1141	chr5	72980868	72980869	rs10755296	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	5q13.2	NR	rs10755296-G	0.292205	2E-16		0.0176523	[0.013-0.022] unit decrease	NR [NR]	N
1142	chr5	73073074	73073075	rs34929759	32986727	Kalra G	2020-09-28	PLoS Genet	Biological insights from multi-omic analysis of 31 genomic risk loci for adult hearing difficulty.	Age-related hearing impairment (MTAG)	330,759 European ancestry individuals	NA	5q13.2		rs34929759-?	NR	1E-22		9.808472	z score increase	Affymetrix [NR] (imputed)	N
1142	chr5	73076510	73076511	rs6453022	34108613	Ivarsdottir EV	2021-06-09	Commun Biol	The genetic architecture of age-related hearing impairment revealed by genome-wide association analysis.	Age-related hearing impairment	121,934 European ancestry cases, 591,699 European ancestry controls	NA	5q13.2	ARHGEF28	rs6453022-A	50.58	3E-23	(additive)	1.05	[NR]	Affymetrix, Illumina [46900000] (imputed)	N
1142	chr5	73103246	73103247	rs188759467	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interferon gamma-induced protein 10 levels	3,685 Finnish ancestry individuals	NA	5q13.2	NR	rs188759467-T		3E-6		0.4504	[0.26-0.64] SD units decrease	NR [10700000] (imputed)	N
1142	chr5	73108572	73108573	rs4703613	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (unclassified genus belonging to family Ruminococcaceae)	1,068 Japanese ancestry individuals	NA	5q13.2	ARHGEF28	rs4703613-A	0.23	2E-6		0.0686	[0.04-0.097] unit increase	Illumina [6380737] (imputed)	N
1142	chr5	73133518	73133519	rs77660130	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure	35,269 European ancestry cases, 63,451 European ancestry controls	NA	5q13.2	NR	rs77660130-A	0.150851	3E-6		1.066	[1.04-1.09]	Affymetrix [7791636] (imputed)	N
1143	chr5	73144828	73144829	rs200028795	34216518	Osman Y	2021-07-03	Int J Lab Hematol	Functional multigenic variations associated with hodgkin lymphoma.	Hodgkin's lymphoma	56 Greater Middle Eastern ancestry cases,  5 unknown ancestry cases, 36 Greater Middle Eastern ancestry controls	NA	5q13.2	ARHGEF28	rs200028795-A	0.422	1E-10		0.05474		Illumina [243345]	N
1143	chr5	73153551	73153552	rs115243197	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Lung function (FEV1/FVC)	371,898 European ancestry individuals	NA	5q13.2		rs115243197-?	NR	6E-10		0.0825562	[0.057-0.108] unit decrease	NR [9800000] (imputed)	N
1143	chr5	73153551	73153552	rs115243197	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	5q13.2		rs115243197-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1143	chr5	73215236	73215237	rs16871023	21502573	Smith NL	2011-04-21	Circulation	Genetic predictors of fibrin D-dimer levels in healthy adults.	D-dimer levels	21,052 European ancestry individuals	NA	5q13.2	RGNEF	rs16871023-G	0.046	1E-6		0.0761	[NR] % decrease	Affymetrix, Illumina [2522393] (imputed)	N
1143	chr5	73222205	73222206	rs35017964	32066700	Zhang R	2020-02-05	Transl Psychiatry	Genome-wide study of immune biomarkers in cerebrospinal fluid and serum from patients with bipolar disorder and controls.	Serum immune biomarker levels	184 Scandinavian ancestry bipolar disorder cases, 107 Scandinavian ancestry controls	NA	5q13.2	intergenic	rs35017964-T	0.989	1E-11	(YKL-40)	48.149	NR unit decrease	Affymetrix, Illumina [> 5000000] (imputed)	N
1143	chr5	73227204	73227205	rs73105738	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (PANSS score)	1,390 European ancestry individuals	NA	5q13.2		rs73105738-G	NR	5E-6	(GLM)	19.8193	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
1143	chr5	73239695	73239696	rs157554	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	5q13.2	NR	rs157554-T	0.3171	7E-6	(EA)	0.0308	[0.017-0.044] unit decrease	Illumina [~ 11800000] (imputed)	N
1143	chr5	73248511	73248512	rs283610	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	5q13.2	RGNEF	rs283610-G	0.456	7E-6	(CRP )	0.03	[NR] ng/mL increase	Illumina [899892]	N
1143	chr5	73266733	73266734	rs74816310	30487263	Pollack S	2018-11-28	Diabetes	Multiethnic Genome-wide Association Study of Diabetic Retinopathy using Liability Threshold Modeling of Duration of Diabetes and Glycemic Control.	Diabetic retinopathy (moderate NPDR and PDR)	644 European ancestry cases, 1,970 European ancestry controls, 768 African American cases, 941 African American controls	2,388 East Asian ancestry cases, 6,219 East Asian ancestry controls, 1,658 European ancestry cases, 3,019 European ancestry controls, 1,014 Hispanic cases, 1,240 Hispanic controls	5q13.2	NR	rs74816310-?	NR	2E-6	(AA, adjusted for duration of diabetes and glycemic control)			Affymetrix, Illumina [NR] (imputed)	N
1144	chr5	73276902	73276903	rs6894385	23534349	Jeff JM	2013-03-28	Ann Hum Genet	Generalization of variants identified by genome-wide association studies for electrocardiographic traits in African Americans.	QT interval	455 African American individuals	NA	5q13.2	intergenic	rs6894385-C		1E-6		9.92	[NR] ms decrease	Illumina [> 930000]	N
1144	chr5	73290655	73290656	rs255593	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Unilateral cleft lip	184 Asian ancestry cases, 151 European ancestry cases, 167 Hispanic cases, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	5q13.2	NR	rs255593-?	NR	3E-6		0.55	[0.5-0.61]	Illumina [539000] (imputed)	N
1144	chr5	73309104	73309105	rs11952583	24665060	Argos M	2014-03-24	J Med Genet	Genome-wide association study of smoking behaviours among Bangladeshi adults.	Smoking initiation	754 Bangladeshi ancestry never smoker males, 2,565 Bangladeshi ancestry never smoker females, 1,837 Bangladeshi ancestry ever smoker males, 198 Bangladeshi ancestry ever smoker females	NA	5q13.3	NR	rs11952583-?		5E-6	(females)			Illumina [1211988] (imputed)	N
1144	chr5	73330561	73330562	rs3097137	32723796	Mehta SD	2020-07-28	mSystems	Host Genetic Factors Associated with Vaginal Microbiome Composition in Kenyan Women.	Vaginal microbiome composition (Shannon diversity index)	171 Kenyan ancestry individuals	NA	5q13.3	ARHGEF28, LINC01335	rs3097137-A	0.2	4E-6		0.56	NR unit increase	Illumina [336151] (imputed)	N
1145	chr5	73425232	73425233	rs167024	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	5q13.3	LINC01335	rs167024-C	0.570421	2E-11		0.012577	[0.0089-0.0163] unit increase	NR [13737936] (imputed)	N
1145	chr5	73425232	73425233	rs167024	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	5q13.3		rs167024-?	NR	2E-12				NR [~ 8900000] (imputed)	N
1145	chr5	73425637	73425638	rs141577316	28272467	Heilmann-Heimbach S	2017-03-08	Nat Commun	Meta-analysis identifies novel risk loci and yields systematic insights into the biology of male-pattern baldness.	Male-pattern baldness	10,846 European ancestry cases, 11,672 European ancestry controls	NA	5q13.3		rs141577316-T	0.02	6E-10		0.58	[0.4-0.76] unit decrease	Affymetrix, Illumina [8004650] (imputed)	N
1145	chr5	73429724	73429725	rs13340349	34586716	Chen J	2021-09-29	Mol Genet Genomic Med	Heritability and genome-wide association study of blood pressure in Chinese adult twins.	Pulse pressure	137 Chinese ancestry twins	NA	5q13.3		rs13340349-?	NR	8E-6				Illumina [7401356] (imputed)	N
1145	chr5	73433307	73433308	rs167025	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	5q13.3	ARHGEF28	rs167025-A	0.3269	6E-9	(EA, men)	0.0427	[0.028-0.057] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1145	chr5	73433307	73433308	rs167025	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	5q13.3	ARHGEF28	rs167025-A	0.3269	1E-8	(men)	0.039	[0.026-0.052] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1145	chr5	73433307	73433308	rs167025	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	5q13.3	ARHGEF28	rs167025-A	0.3259	3E-6	(men)	0.0385	[0.022-0.055] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1145	chr5	73433307	73433308	rs167025	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	5q13.3	ARHGEF28	rs167025-A	0.3259	3E-6	(EA, men)	0.0385	[0.022-0.055] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1145	chr5	73433307	73433308	rs167025	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	5q13.3	ARHGEF28	rs167025-?	0.3269	4E-9	(men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1145	chr5	73433307	73433308	rs167025	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	5q13.3	ARHGEF28	rs167025-?	0.3269	4E-9	(EA, men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1145	chr5	73441847	73441848	rs392079	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	5q13.3		rs392079-?	NR	2E-9		0.0132235	[0.0089-0.0175] unit increase	Affymetrix [20259828] (imputed)	N
1145	chr5	73483120	73483120	rs199880074	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Chin dimples	58,032 European ancestry cases, 13,457 European ancestry controls	NA	5q13.3	ARHGEF28, ENC1	rs199880074-?	NR	5E-12		1.1198208	[1.08-1.16]	Illumina [13537761] (imputed)	N
1145	chr5	73491140	73491141	rs158813	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	5q13.3	NR	rs158813-?	NR	5E-6		4.58	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1145	chr5	73502593	73502594	rs146159092	29703947	Jawinski P	2018-04-27	Mol Psychiatry	Human brain arousal in the resting state: a genome-wide association study.	Resting-state electroencephalogram vigilance	1,877 European ancestry individuals	NA	5q13.3	intergenic	rs146159092-G	0.99	7E-6	(Stability score)	3.0661	[1.74-4.4] unit increase	Affymetrix [8042262] (imputed)	N
1145	chr5	73518511	73518512	rs55859855	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	5q13.3		rs55859855-A	NR	9E-6		3.3434	[1.9-4.78] unit increase	Illumina [NR] (imputed)	N
1146	chr5	73548363	73548364	rs10074415	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	5q13.3	Intergenic	rs10074415-?		8E-6		1.2292	[1.13-1.34]	Illumina [9389922] (imputed)	N
1146	chr5	73625861	73625862	rs138870727	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	5q13.3	NR	rs138870727-?	NR	2E-8				Illumina [7760689] (imputed)	N
1146	chr5	73631683	73631684	rs9918159	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5q13.3	HEXB	rs9918159-?	NR	3E-7	(phosphocreatine)	0.34641212	[0.21-0.48] unit increase	Affymetrix [at least 2500000] (imputed)	N
1146	chr5	73654997	73654998	rs80337801	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	5q13.3	NR	rs80337801-?	NR	3E-7	(Native Hawaiian)	0.9711	[NR] unit increase	Illumina [up to 11892802] (imputed)	N
1147	chr5	73677053	73677054	rs2652110	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	5q13.3		rs2652110-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1147	chr5	73680313	73680314	rs12517545	27927641	Ombrello MJ	2016-12-07	Ann Rheum Dis	Genetic architecture distinguishes systemic juvenile idiopathic arthritis from other forms of juvenile idiopathic arthritis: clinical and therapeutic implications.	Systemic juvenile idiopathic arthritis	178 European ancestry cases, 434 European ancestry controls, 81 Hispanic/Latin American cases, 177 Hispanic/Latin American controls, 511 cases, 6,336 controls	NA	5q13.3	ENC1, LOC101929082	rs12517545-?		5E-7	(Dominant)	1.6666665	[1.25-2]	Illumina [5600610] (imputed)	N
1147	chr5	73681081	73681082	rs564979	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	5q13.3	LINC01331	rs564979-T	0.159389	2E-9		0.0151657	[0.01-0.02] unit increase	NR [13737936] (imputed)	N
1147	chr5	73687285	73687286	rs76768179	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	5q13.3	CTC-419K13.1, ENC1, HEXB	rs76768179-G	NR	8E-6	(sleep onset irregularity)	0.1142	[0.064-0.164] unit decrease	Affymetrix [7141204] (imputed)	N
1147	chr5	73690348	73690349	rs10065639	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	5q13.3		rs10065639-?	NR	2E-11		0.015239	[0.01-0.02] unit decrease	Affymetrix [20259828] (imputed)	N
1147	chr5	73716117	73716118	rs295688	26116289	Raginis-Zborowska A	2015-06-24	Exp Gerontol	Genetic determinants of swallowing impairments among community dwelling older population.	Dysphagia	71 European ancestry older adult cases, 484 European ancestry older adult controls	NA	5q13.3	NR	rs295688-?	NR	6E-6		2.523	[NR]	Illumina [4196861] (imputed)	N
1147	chr5	73750043	73750044	rs1873364	30172743	Liang X	2018-08-30	Bone	Assessing the genetic correlations between early growth parameters and bone mineral density: A polygenic risk score analysis.	Bone mineral density (hip)	2,286 European ancestry individuals	NA	5q13.3	ENC1	rs1873364-?	NR	5E-6				Affymetrix [753382]	N
1148	chr5	73813213	73813214	rs151146085	28927378	Qian DC	2017-09-19	BMC Genomics	Genome-wide imaging association study implicates functional activity and glial homeostasis of the caudate in smoking addiction.	Caudate activity during reward	106 individuals	NA	5q13.3	NR	rs151146085-T	0.0201408	9E-6		2.3236868	[1.35-3.29] unit increase	Illumina [at least 621854] (imputed)	N
1148	chr5	73847076	73847077	rs438531	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5q13.3	HEXB	rs438531-?	NR	8E-6	(isocitrate)	0.17240258	[0.097-0.248] unit increase	Affymetrix [at least 2500000] (imputed)	N
1148	chr5	73847915	73847916	rs76662990	28441426	White CC	2017-04-25	PLoS Med	Identification of genes associated with dissociation of cognitive performance and neuropathological burden: Multistep analysis of genetic, epigenetic, and transcriptional data.	Residual cognition	979 European ancestry individuals	NA	5q13.3	ENC1	rs76662990-G	0.11	8E-6		0.3	[NR] z score increase	Affymetrix, Illumina [~ 7000000] (imputed)	N
1149	chr5	73944315	73944316	rs112079675	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 5, width of mouth relative to central midface)	2,187 European ancestry individuals	NA	5q13.3	NR	rs112079675-C	0.02019	1E-6		0.524	[0.31-0.74] unit increase	Illumina [10677593] (imputed)	N
1149	chr5	73959525	73959526	rs2454846	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	5q13.3		rs2454846-G	0.29	2E-9		5.96	z score increase	Affymetrix [9061022] (imputed)	N
1149	chr5	73959525	73959526	rs2454846	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	5q13.3	NR	rs2454846-G	0.2936	3E-10				NR [9056863] (imputed)	N
1149	chr5	73959525	73959526	rs2454846	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5q13.3		rs2454846-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1149	chr5	74013610	74013611	rs6453074	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (unassigned genus belonging to family Clostridiales)	1,068 Japanese ancestry individuals	NA	5q13.3	HEXB	rs6453074-A	0.38	6E-6	(female)	0.0632	[0.036-0.09] unit decrease	Illumina [6380737] (imputed)	N
1150	chr5	74056512	74056513	rs7705519	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Deep white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	5q13.3	GFM2	rs7705519-T	0.8345	9E-6		0.0318	[0.018-0.046] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1150	chr5	74108389	74108390	rs61589039	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q13.3	NR	rs61589039-A	0.01394	3E-9	(ACTN4)	0.3285	NR unit increase	Illumina [1671387] (imputed)	N
1151	chr5	74213550	74213551	rs181468389	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial squamous cell lung carcinoma	367 European ancestry cases, 31,563 European ancestry controls	NA	5q13.3	CTD-2503O16.4	rs181468389-A	0.005	2E-7		9.09	[3.97-20.78]	Illumina [7959153] (imputed)	N
1151	chr5	74242001	74242002	rs4072296	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	5q13.3	NR	rs4072296-?	NR	1E-15				Affymetrix [~ 8270000] (imputed)	N
1151	chr5	74245201	74245202	rs114533012	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	5q13.3	NR	rs114533012-C	NR	1E-11		0.0437	[0.031-0.056] unit increase	Affymetrix [9000000] (imputed)	N
1151	chr5	74245201	74245202	rs114533012	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	5q13.3	NR	rs114533012-C	NR	8E-11		0.0421	[0.029-0.055] unit increase	Affymetrix [9000000] (imputed)	N
1151	chr5	74249906	74249907	rs10462509	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	5q13.3	NR	rs10462509-G	NR	1E-10		0.039	[0.027-0.051] unit increase	Affymetrix [9000000] (imputed)	N
1151	chr5	74249906	74249907	rs10462509	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	5q13.3	NR	rs10462509-G	NR	5E-9		0.0356	[0.024-0.048] unit increase	Affymetrix [9000000] (imputed)	N
1151	chr5	74255069	74255070	rs114523982	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	5q13.3	NR	rs114523982-C	NR	4E-9		0.0568	[0.038-0.076] unit increase	Affymetrix [9000000] (imputed)	N
1151	chr5	74260106	74260107	rs13184992	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Life satisfaction	166,205 European ancestry individuals	NA	5q13.3	NR	rs13184992-T	0.8329	8E-6		0.0216	[0.012-0.031] unit increase	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
1151	chr5	74262161	74262162	rs4703642	27286809	Ligthart S	2016-06-10	BMC Genomics	Bivariate genome-wide association study identifies novel pleiotropic loci for lipids and inflammation.	C-reactive protein levels or total cholesterol levels (pleiotropy)	65,000 individuals (C-reactive protein), 100,184 individuals (total cholesterol)	NA	5q13.3	GCNT4	rs4703642-A	NR	7E-13				NR [2501549] (imputed)	N
1151	chr5	74262161	74262162	rs4703642	27286809	Ligthart S	2016-06-10	BMC Genomics	Bivariate genome-wide association study identifies novel pleiotropic loci for lipids and inflammation.	C-reactive protein levels or LDL-cholesterol levels (pleiotropy)	65,000 individuals (C-reactive protein), 95,454 individuals (LDL-cholesterol)	NA	5q13.3	GCNT4	rs4703642-A	NR	2E-11				NR [2501749] (imputed)	N
1151	chr5	74273490	74273491	rs76294854	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q13.3	NR	rs76294854-A	0.0122	2E-8	(DPP7)	0.153	NR unit increase	Illumina [1671387] (imputed)	N
1151	chr5	74284867	74284868	rs182887791	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Yeast infection	52,218 European ancestry cases, 10,235 European ancestry controls	NA	5q13.3	NR	rs182887791-?	NR	4E-6		0.3495	[0.2-0.5] unit decrease	Illumina [at least 560000] (imputed)	N
1151	chr5	74299143	74299144	rs4320241	29503163	Yu H	2018-03-01	Lancet Psychiatry	Five novel loci associated with antipsychotic treatment response in patients with schizophrenia: a genome-wide association study.	Response to ziprazidone in schizophrenia	408 Han Chinese ancestry cases	NA	5q13.3	GCNT4	rs4320241-C	NR	1E-6		20.0689	[12.16-27.98] unit increase	Illumina [6097251] (imputed)	N
1151	chr5	74302657	74302658	rs4555772	23362303	Wu JH	2013-01-29	Circ Cardiovasc Genet	Genome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortium.	Stearic acid (18:0) levels	8,961 European ancestry individuals		5q13.3	GCNT4	rs4555772-A	NR	4E-6		0.0888	unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1151	chr5	74316684	74316685	rs79783247	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	5q13.3	NR	rs79783247-G	NR	1E-10		0.058	[0.04-0.076] unit increase	Affymetrix [9000000] (imputed)	N
1151	chr5	74316684	74316685	rs79783247	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	5q13.3	NR	rs79783247-G	NR	6E-10		0.0561	[0.038-0.074] unit increase	Affymetrix [9000000] (imputed)	N
1152	chr5	74344491	74344492	rs73125247	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	5q13.3	NR	rs73125247-?	NR	2E-21				Affymetrix [~ 8270000] (imputed)	N
1152	chr5	74345368	74345369	rs9293641	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	5q13.3	NR	rs9293641-A	NR	4E-19		0.0355	[0.028-0.043] unit increase	Affymetrix [9000000] (imputed)	N
1152	chr5	74345368	74345369	rs9293641	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	5q13.3	NR	rs9293641-A	NR	3E-24		0.0405	[0.033-0.048] unit increase	Affymetrix [9000000] (imputed)	N
1152	chr5	74345368	74345369	rs9293641	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	5q13.3	NR	rs9293641-A	NR	3E-19		0.0358	[0.028-0.044] unit increase	Affymetrix [9000000] (imputed)	N
1152	chr5	74347993	74347995	rs34184354	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	5q13.3		rs34184354-C	NR	6E-16		0.0332	[0.025-0.041] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
1152	chr5	74349932	74349933	rs76722284	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	5q13.3	GCNT4, ANKRD31	rs76722284-A	0.043	2E-15		7.97	z-score increase	Affymetrix [4314223] (imputed)	N
1152	chr5	74349932	74349933	rs76722284	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	5q13.3	NR	rs76722284-A	NR	2E-11		0.038	[0.027-0.049] unit increase	Affymetrix [9000000] (imputed)	N
1152	chr5	74349932	74349933	rs76722284	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	5q13.3	NR	rs76722284-A	NR	8E-11		0.0366	[0.026-0.048] unit increase	Affymetrix [9000000] (imputed)	N
1152	chr5	74368253	74368254	rs4704171	31473137	Moreno-Grau S	2019-08-13	Alzheimers Dement	Genome-wide association analysis of dementia and its clinical endophenotypes reveal novel loci associated with Alzheimer's disease and three causality networks: The GR@ACE project.	Alzheimer's disease	4,120 Spanish ancestry cases, 11,999 cases, 3,289 Spanish ancestry controls, 9,236 controls	1,943 Spanish ancestry cases, 3,016 Spanish ancestry controls	5q13.3	ANKRD31	rs4704171-?	NR	1E-8		1.18	[1.11-1.24]	Affymetrix [up to 7700000] (imputed)	N
1152	chr5	74397445	74397446	rs112386051	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	5q13.3	NR	rs112386051-?	NR	3E-11				Affymetrix [~ 8270000] (imputed)	N
1153	chr5	74459423	74459424	rs144469896	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Yeast infection	52,218 European ancestry cases, 10,235 European ancestry controls	NA	5q13.3	NR	rs144469896-?	NR	1E-6		0.3207	[0.19-0.45] unit decrease	Illumina [at least 560000] (imputed)	N
1153	chr5	74480287	74480288	rs4704187	22952603	Hart AB	2012-08-28	PLoS One	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 10 individuals	NA	5q13.3	ANKRD31	rs4704187-?	NR	6E-6	(SF6)			Affymetrix [5476100] (imputed)	N
1153	chr5	74508903	74508904	rs113448121	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		ANKRD31	rs113448121-?	NR	5E-8	(female)	0.622252	[NR] unit increase	Affymetrix [NR] (imputed)	N
1153	chr5	74542619	74542620	rs61602173	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	5q13.3	NR	rs61602173-T	NR	5E-67		0.0657	[0.058-0.073] unit increase	Affymetrix [9000000] (imputed)	N
1153	chr5	74542619	74542620	rs61602173	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	5q13.3	NR	rs61602173-T	NR	9E-73		0.0686	[0.061-0.076] unit increase	Affymetrix [9000000] (imputed)	N
1153	chr5	74542619	74542620	rs61602173	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	5q13.3	NR	rs61602173-T	NR	7E-53		0.0583	[0.051-0.066] unit increase	Affymetrix [9000000] (imputed)	N
1153	chr5	74565199	74565211	rs199987224	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	5q13.3	intergenic	rs199987224-?	0.3925	2E-79		0.0648	[0.058-0.071] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1153	chr5	74566172	74566173	rs369330343	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	5q13.3		rs369330343-T	0.591102	3E-8		0.0234033	[0.015-0.032] unit decrease	NR [11722792] (imputed)	N
1153	chr5	74574983	74574984	rs2126736	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	5q13.3	HMGCR	rs2126736-A	0.428	2E-8		1.04	[1.02-1.05]	Affymetrix, Illumina [11800000] (imputed)	N
1153	chr5	74575800	74575801	rs1115091	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	5q13.3	NR	rs1115091-?	NR	3E-19				Affymetrix [~ 8270000] (imputed)	N
1154	chr5	74595193	74595194	rs10942734	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	5q13.3		rs10942734-C	NR	1E-11		0.015	[0.011-0.019] unit increase	Affymetrix, Illumina [20528270] (imputed)	N
1154	chr5	74595193	74595194	rs10942734	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	5q13.3	NR	rs10942734-C	0.4284	2E-11		0.001531	[0.0011-0.002] unit increase	Affymetrix [NR] (imputed)	N
1154	chr5	74602698	74602699	rs1423527	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	5q13.3	NR	rs1423527-?	NR	1E-18		3.042184	[2.37-3.72] unit increase	Illumina [32003504] (imputed)	N
1154	chr5	74602698	74602699	rs1423527	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	5q13.3	NR	rs1423527-?	NR	1E-19		2.814453	[2.21-3.42] unit increase	Illumina [31808917] (imputed)	N
1154	chr5	74602698	74602699	rs1423527	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	5q13.3	NR	rs1423527-C	NR	7E-59		0.068	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1154	chr5	74602698	74602699	rs1423527	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	5q13.3	NR	rs1423527-C	0.592	2E-51	(EA)	0.07	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1154	chr5	74602698	74602699	rs1423527	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	5q13.3	NR	rs1423527-C	0.446	3E-6	(East Asian)	0.073	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1154	chr5	74602698	74602699	rs1423527	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	5q13.3	NR	rs1423527-C	NR	3E-70		0.076	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1154	chr5	74602698	74602699	rs1423527	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	5q13.3	NR	rs1423527-C	0.592	6E-60	(EA)	0.078	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1154	chr5	74602698	74602699	rs1423527	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	5q13.3	NR	rs1423527-C	0.446	4E-7	(East Asian)	0.08	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1154	chr5	74603478	74603479	rs2335418	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	5q13.3	NR	rs2335418-G	0.579942	5E-321		0.074248	[0.07-0.078] unit decrease	Affymetrix [15000001]	N
1154	chr5	74604741	74604742	rs6871667	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	5q13.3	NR	rs6871667-?	NR	3E-15		2.762136	[2.08-3.45] unit increase	Illumina [32003504] (imputed)	N
1154	chr5	74604741	74604742	rs6871667	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	5q13.3	NR	rs6871667-?	NR	5E-17		2.626919	[2.01-3.24] unit increase	Illumina [31808917] (imputed)	N
1154	chr5	74604741	74604742	rs6871667	26582766	Lu X	2015-11-18	Circ Cardiovasc Genet	Genetic Susceptibility to Lipid Levels and Lipid Change Over Time and Risk of Incident Hyperlipidemia in Chinese Populations.	LDL cholesterol	8,344 Han Chinese ancestry individuals	14,739 Han Chinese ancestry individuals	5q13.3	HMGCR	rs6871667-A	0.55	7E-13		2.014	[1.47-2.56] unit increase	Affymetrix, Illumina [2573667] (imputed)	N
1154	chr5	74604741	74604742	rs6871667	26582766	Lu X	2015-11-18	Circ Cardiovasc Genet	Genetic Susceptibility to Lipid Levels and Lipid Change Over Time and Risk of Incident Hyperlipidemia in Chinese Populations.	Cholesterol, total	8,344 Han Chinese ancestry individuals	14,739 Han Chinese ancestry individuals	5q13.3	HMGCR	rs6871667-A	0.55	8E-12		2.214	[1.58-2.85] unit increase	Affymetrix, Illumina [2573667] (imputed)	N
1154	chr5	74605219	74605220	rs10056811	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	5q13.3		rs10056811-G	0.663484	1E-11		0.0284779	[0.02-0.037] unit increase	NR [11722792] (imputed)	N
1154	chr5	74605219	74605220	rs10056811	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	5q13.3		rs10056811-G	0.663484	1E-28		0.0462297	[0.038-0.054] unit decrease	NR [11722792] (imputed)	N
1154	chr5	74605219	74605220	rs10056811	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	5q13.3		rs10056811-G	0.663484	1E-27		0.0453834	[0.037-0.054] unit decrease	NR [11722792] (imputed)	N
1154	chr5	74605219	74605220	rs10056811	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	5q13.3		rs10056811-G	0.663484	3E-9		0.0257693	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
1154	chr5	74605219	74605220	rs10056811	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	5q13.3	intergenic	rs10056811-A	0.3466	4E-6		0.0274	[0.016-0.039] unit increase	NR [8041861] (imputed)	N
1154	chr5	74613905	74613906	rs4703667	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x long total sleep time interaction (2df test)	2,913 African American long sleepers, 358 Chinese ancestry long sleepers, 110 Asian ancestry long sleepers, 7,583 European ancestry long sleepers, 1,036 Hispanic/Latino long sleepers, up to 11,862 African American controls, 1,432 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,744 European ancestry controls, 4,066 Hispanic/Latino controls	at least 214 African American long sleepers, 616 East Asian ancestry long sleepers, up to 6,657 European ancestry long sleepers, 2,457 Hispanic long sleepers, at least 913 African American controls, 2,517 East Asian ancestry controls, up to 26,868 European ancestry controls, 9,870 Hispanic controls	5q13.3	HMGCR	rs4703667-?	NR	4E-32		2.096	[1.75-2.45] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1154	chr5	74613905	74613906	rs4703667	27005778	Kettunen J	2016-03-23	Nat Commun	Genome-wide study for circulating metabolites identifies 62 loci and reveals novel systemic effects of LPA.	Metabolite levels (lipoprotein measures)	2,118 Erasmus Rucphen (founder/genetic isolate), 22,807 European ancestry individuals	NA	5q13.3	HMGCR	rs4703667-C	0.39	3E-18	(Total cholesterol in small LDL)	0.09	[0.07-0.11] unit increase	Affymetrix, Illumina, Perlegen [12133295] (imputed)	N
1154	chr5	74617045	74617046	rs17647994	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	5q13.3	NR	rs17647994-C	NR	2E-13		0.0425	[0.031-0.054] unit decrease	Affymetrix [9000000] (imputed)	N
1154	chr5	74617045	74617046	rs17647994	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	5q13.3	NR	rs17647994-C	NR	8E-14		0.0432	[0.032-0.055] unit decrease	Affymetrix [9000000] (imputed)	N
1154	chr5	74617045	74617046	rs17647994	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	5q13.3	NR	rs17647994-C	NR	3E-10		0.0365	[0.025-0.048] unit decrease	Affymetrix [9000000] (imputed)	N
1154	chr5	74618185	74618186	rs13358429	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	5q13.3		rs13358429-G	0.659291	1E-30		0.0483707	[0.04-0.057] unit increase	NR [11722792] (imputed)	N
1154	chr5	74618185	74618186	rs13358429	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	5q13.3		rs13358429-G	0.659291	7E-27		0.0441578	[0.036-0.052] unit increase	NR [11722792] (imputed)	N
1154	chr5	74618185	74618186	rs13358429	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	5q13.3		rs13358429-G	0.659297	5E-14		0.0327117	[0.024-0.041] unit increase	NR [11722792] (imputed)	N
1154	chr5	74618185	74618186	rs13358429	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	5q13.3		rs13358429-G	0.659291	6E-35		0.0515943	[0.043-0.06] unit decrease	NR [11722792] (imputed)	N
1154	chr5	74618185	74618186	rs13358429	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	5q13.3		rs13358429-G	0.659291	5E-31		0.0480586	[0.04-0.056] unit decrease	NR [11722792] (imputed)	N
1154	chr5	74618185	74618186	rs13358429	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	5q13.3		rs13358429-G	0.659297	1E-8		0.0245817	[0.016-0.033] unit decrease	NR [11722792] (imputed)	N
1154	chr5	74618185	74618186	rs13358429	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	5q13.3		rs13358429-G	0.659291	5E-21		0.0383791	[0.03-0.046] unit decrease	NR [11722792] (imputed)	N
1154	chr5	74618185	74618186	rs13358429	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	5q13.3		rs13358429-G	0.659297	2E-17		0.0355087	[0.027-0.044] unit decrease	NR [11722792] (imputed)	N
1154	chr5	74618185	74618186	rs13358429	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	5q13.3		rs13358429-G	0.659291	7E-24		0.0413092	[0.033-0.049] unit decrease	NR [11722792] (imputed)	N
1154	chr5	74618185	74618186	rs13358429	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	5q13.3		rs13358429-G	0.659297	2E-17		0.0361466	[0.028-0.044] unit decrease	NR [11722792] (imputed)	N
1154	chr5	74619131	74619132	rs13354746	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	20,917 European ancestry cases, 440,906 European ancestry controls, 14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	5q13.3		rs13354746-T	NR	3E-8		0.0552	[0.036-0.075] unit increase	Affymetrix, Illumina [25841367] (imputed)	N
1154	chr5	74619131	74619132	rs13354746	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	5q13.3	ANKRD31, HMGCR	rs13354746-?	NR	2E-8		0.0316372	[0.021-0.043] unit increase	Illumina [4804024] (imputed)	N
1154	chr5	74619638	74619639	rs79225634	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	5q13.3		rs79225634-C	0.659498	3E-19		0.0379026	[0.03-0.046] unit increase	NR [11722792] (imputed)	N
1154	chr5	74619638	74619639	rs79225634	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	5q13.3		rs79225634-C	0.659498	4E-19		0.0377805	[0.03-0.046] unit decrease	NR [11722792] (imputed)	N
1154	chr5	74619638	74619639	rs79225634	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	5q13.3		rs79225634-C	0.659498	3E-10		0.0262327	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
1154	chr5	74619638	74619639	rs79225634	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	5q13.3		rs79225634-C	0.659498	2E-12		0.0294066	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
1154	chr5	74624233	74624234	rs6895057	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	5q13.3	NR	rs6895057-?	NR	1E-10				Affymetrix [~ 8270000] (imputed)	N
1154	chr5	74624481	74624482	rs3843480	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Forns index in high alcohol intake	33,437 British ancestry individuals	NA	5q13.3		rs3843480-?	0.3748	4E-9		0.002858	unit decrease	NR [6200000] (imputed)	N
1154	chr5	74625486	74625487	rs7703051	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	5q13.3		rs7703051-C	0.625146	1E-12		0.0304491	[0.022-0.039] unit decrease	NR [11722792] (imputed)	N
1154	chr5	74625486	74625487	rs7703051	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	5q13.3		rs7703051-C	0.625146	3E-15		0.033721	[0.025-0.042] unit decrease	NR [11722792] (imputed)	N
1154	chr5	74625486	74625487	rs7703051	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	5q13.3	NR	rs7703051-?	NR	7E-20		3.217376	[2.53-3.91] unit increase	Illumina [32003504] (imputed)	N
1154	chr5	74625486	74625487	rs7703051	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	5q13.3	NR	rs7703051-?	NR	7E-19		2.806351	[2.19-3.43] unit increase	Illumina [31808917] (imputed)	N
1154	chr5	74625486	74625487	rs7703051	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	LDL cholesterol levels	up to 23,353 African ancestry individuals, 13,171 Asian ancestry individuals, up to 82,522 European ancestry individuals, 6,646 Hispanic individuals	NA	5q13.3		rs7703051-A	0.3913	9E-33		1.8978	[1.59-2.21] unit increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1154	chr5	74625486	74625487	rs7703051	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	5q13.3	NR	rs7703051-C	NR	2E-66		0.073	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1154	chr5	74625486	74625487	rs7703051	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	5q13.3	NR	rs7703051-C	0.615	4E-57	(EA)	0.075	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1154	chr5	74625486	74625487	rs7703051	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	5q13.3	NR	rs7703051-C	0.48	9E-8	(East Asian)	0.085	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1154	chr5	74625486	74625487	rs7703051	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	5q13.3	NR	rs7703051-C	NR	5E-78		0.081	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1154	chr5	74625486	74625487	rs7703051	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	5q13.3	NR	rs7703051-C	0.618	9E-7	(Hispanic)	0.076	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1154	chr5	74625486	74625487	rs7703051	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	5q13.3	NR	rs7703051-C	0.615	1E-65	(EA)	0.083	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1154	chr5	74625486	74625487	rs7703051	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	5q13.3	NR	rs7703051-C	0.48	1E-8	(East Asian)	0.091	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1154	chr5	74625486	74625487	rs7703051	27790247	He L	2016-11-03	Front Genet	Pleiotropic Meta-Analyses of Longitudinal Studies Discover Novel Genetic Variants Associated with Age-Related Diseases.	Age-related diseases, mortality and associated endophenotypes	9,618 European ancestry individuals	19,796 European ancestry individuals	5q13.3	NR	rs7703051-?	NR	9E-12				Affymetrix [NR]	N
1154	chr5	74625486	74625487	rs7703051	27790247	He L	2016-11-03	Front Genet	Pleiotropic Meta-Analyses of Longitudinal Studies Discover Novel Genetic Variants Associated with Age-Related Diseases.	Age-related disease endophenotypes	9,618 European ancestry individuals	19,796 European ancestry individuals	5q13.3	NR	rs7703051-?	NR	4E-12				Affymetrix [NR]	N
1154	chr5	74625486	74625487	rs7703051	18802019	Burkhardt R	2008-09-18	Arterioscler Thromb Vasc Biol	Common SNPs in HMGCR in micronesians and whites associated with LDL-cholesterol levels affect alternative splicing of exon13.	LDL cholesterol	2,346 Micronesian ancestry individuals	NA	5q13.3	HMGCR	rs7703051-A	0.41	1E-8		18.0	[NR] % s.d. increase	Affymetrix [~ 500000]	N
1154	chr5	74628374	74628375	rs3843481	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	5q13.3	CTD-2235C13.2	rs3843481-T	0.374623	1E-12		0.016493026	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1154	chr5	74633013	74633014	rs142563098	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q13.3	NR	rs142563098-C	0.01394	3E-8	(SEPT11)	0.03399	NR unit decrease	Illumina [1671387] (imputed)	N
1154	chr5	74635224	74635225	rs4704210	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-6 fatty acid levels	115,006 European ancestry individuals	NA	5q13.3		rs4704210-G	0.625794	1E-28		0.0463297	[0.038-0.054] unit decrease	NR [11722792] (imputed)	N
1154	chr5	74635224	74635225	rs4704210	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	5q13.3		rs4704210-C	0.513434685	2E-27		0.10033591	[0.082-0.118] unit increase	Illumina [13429980] (imputed)	N
1154	chr5	74636483	74636484	rs10045497	24386095	Zhou L	2013-12-30	PLoS One	A genome wide association study identifies common variants associated with lipid levels in the Chinese population.	Lipid traits	3,451 Han Chinese ancestry individuals	8,830 Han Chinese ancestry individuals	5q13.3	HMGCR	rs10045497-C	0.49	2E-8	(TC)	0.022	[0.012-0.032] mmol/L increase	Affymetrix, Illumina [up to 2249917] (imputed)	N
1154	chr5	74636483	74636484	rs10045497	24386095	Zhou L	2013-12-30	PLoS One	A genome wide association study identifies common variants associated with lipid levels in the Chinese population.	Lipid traits	3,451 Han Chinese ancestry individuals	8,830 Han Chinese ancestry individuals	5q13.3	HMGCR	rs10045497-C	0.49	1E-12	(LDL)	0.1	[0.061-0.139] mmol/L increase	Affymetrix, Illumina [up to 2249917] (imputed)	N
1154	chr5	74637710	74637711	rs10038095	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	5q13.3	NR	rs10038095-?	NR	6E-20		3.232074	[2.54-3.92] unit increase	Illumina [32003504] (imputed)	N
1154	chr5	74637710	74637711	rs10038095	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	5q13.3	NR	rs10038095-?	NR	6E-19		2.822193	[2.2-3.44] unit increase	Illumina [31808917] (imputed)	N
1154	chr5	74637710	74637711	rs10038095	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	5q13.3	NR	rs10038095-A	NR	3E-66		0.073	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1154	chr5	74637710	74637711	rs10038095	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	5q13.3	NR	rs10038095-A	0.616	3E-57	(EA)	0.075	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1154	chr5	74637710	74637711	rs10038095	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	5q13.3	NR	rs10038095-A	0.484	2E-7	(East Asian)	0.084	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1154	chr5	74637710	74637711	rs10038095	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	5q13.3	NR	rs10038095-A	NR	1E-77		0.081	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1154	chr5	74637710	74637711	rs10038095	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	5q13.3	NR	rs10038095-A	0.619	1E-6	(Hispanic)	0.075	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1154	chr5	74637710	74637711	rs10038095	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	5q13.3	NR	rs10038095-A	0.616	8E-66	(EA)	0.083	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1154	chr5	74637710	74637711	rs10038095	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	5q13.3	NR	rs10038095-A	0.484	3E-8	(East Asian)	0.09	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1154	chr5	74637710	74637711	rs10038095	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	Cholesterol, total	up to 62,166 European ancestry individuals	NA	5q13.3	HMGCR	rs10038095-T	0.38	3E-43		0.083	[0.071-0.095] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
1154	chr5	74639177	74639178	rs3846661	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Low density lipoprotein cholesterol levels	72,866 Japanese ancestry individuals	NA	5q13.3	HMGCR	rs3846661-?	NR	5E-31		0.06316	[0.052-0.074] unit increase novel	Illumina [6108953] (imputed)	N
1154	chr5	74639258	74639259	rs3843482	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	5q13.3		rs3843482-T	0.626198	1E-28		0.0465189	[0.038-0.055] unit decrease	NR [11722792] (imputed)	N
1154	chr5	74639258	74639259	rs3843482	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Polyunsaturated fatty acid levels	115,006 European ancestry individuals	NA	5q13.3		rs3843482-T	0.626169	7E-24		0.0417429	[0.034-0.05] unit decrease	NR [11722792] (imputed)	N
1154	chr5	74639258	74639259	rs3843482	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very small VLDL	115,082 European ancestry individuals	NA	5q13.3		rs3843482-T	0.626198	2E-42		0.0561669	[0.048-0.064] unit decrease	NR [11722792] (imputed)	N
1154	chr5	74639258	74639259	rs3843482	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	5q13.3	NR	rs3843482-?	NR	2E-22		3.542334	[2.83-4.26] unit increase	Illumina [32003504] (imputed)	N
1154	chr5	74639258	74639259	rs3843482	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	5q13.3	NR	rs3843482-?	NR	9E-20		2.967882	[2.33-3.61] unit increase	Illumina [31808917] (imputed)	N
1154	chr5	74639258	74639259	rs3843482	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	5q13.3	NR	rs3843482-T	NR	3E-66		0.075	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1154	chr5	74639258	74639259	rs3843482	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	5q13.3	NR	rs3843482-T	0.622	1E-57	(EA)	0.077	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1154	chr5	74639258	74639259	rs3843482	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	5q13.3	NR	rs3843482-T	0.49	2E-7	(East Asian)	0.084	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1154	chr5	74639258	74639259	rs3843482	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	5q13.3	NR	rs3843482-T	NR	7E-78		0.083	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1154	chr5	74639258	74639259	rs3843482	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	5q13.3	NR	rs3843482-T	0.629	1E-6	(Hispanic)	0.077	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1154	chr5	74639258	74639259	rs3843482	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	5q13.3	NR	rs3843482-T	0.622	8E-66	(EA)	0.084	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1154	chr5	74639258	74639259	rs3843482	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	5q13.3	NR	rs3843482-T	0.49	2E-8	(East Asian)	0.092	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1154	chr5	74639258	74639259	rs3843482	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	LDL cholesterol	up 62,166 European ancestry individuals	NA	5q13.3	HMGCR	rs3843482-G	0.38	2E-45		0.087	[0.075-0.099] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
1154	chr5	74639544	74639544	rs763938651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large HDL	115,082 European ancestry individuals	NA	5q13.3		rs763938651-CTTGTA,rs763938651-CTTGTA	0.636745	9E-9		0.024171	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
1154	chr5	74639544	74639544	rs763938651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large HDL	115,082 European ancestry individuals	NA	5q13.3		rs763938651-CTTGTA,rs763938651-CTTGTA	0.636745	9E-9		0.024171	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
1154	chr5	74639544	74639544	rs763938651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	5q13.3		rs763938651-CTTGTA,rs763938651-CTTGTA	0.636745	3E-23		0.040562	[0.033-0.049] unit decrease	NR [11722792] (imputed)	N
1154	chr5	74639544	74639544	rs763938651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	5q13.3		rs763938651-CTTGTA,rs763938651-CTTGTA	0.636745	3E-23		0.040562	[0.033-0.049] unit decrease	NR [11722792] (imputed)	N
1154	chr5	74639544	74639544	rs763938651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in IDL	115,082 European ancestry individuals	NA	5q13.3		rs763938651-CTTGTA,rs763938651-CTTGTA	0.636745	9E-44		0.0578504	[0.05-0.066] unit decrease	NR [11722792] (imputed)	N
1154	chr5	74639544	74639544	rs763938651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in IDL	115,082 European ancestry individuals	NA	5q13.3		rs763938651-CTTGTA,rs763938651-CTTGTA	0.636745	9E-44		0.0578504	[0.05-0.066] unit decrease	NR [11722792] (imputed)	N
1154	chr5	74640489	74640490	rs2878419	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	5q13.3		rs2878419-C	0.62648	1E-29		0.0466342	[0.039-0.055] unit increase	NR [11722792] (imputed)	N
1154	chr5	74642847	74642848	rs17244834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of linoleic acid to total fatty acids	115,006 European ancestry individuals	NA	5q13.3		rs17244834-A	0.626101	1E-15		0.0329164	[0.025-0.041] unit decrease	NR [11722792] (imputed)	N
1154	chr5	74643998	74643998	rs10683134	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total esterified cholesterol levels	115,082 European ancestry individuals	NA	5q13.3		rs10683134-A	0.602585	4E-36		0.0511736	[0.043-0.059] unit decrease	NR [11722792] (imputed)	N
1154	chr5	74648602	74648603	rs12654264	31902109	Li D	2020-01-04	Genes Genomics	Progressive effects of single-nucleotide polymorphisms on 16 phenotypic traits based on longitudinal data.	Cholesterol	6,840 Korean ancestry individuals	NA	5q13.3	HMGCR	rs12654264-T	0.4758	1E-9	(LDL)	2.625	NR unit decrease	Affymetrix [305158]	N
1154	chr5	74648602	74648603	rs12654264	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	5q13.3	NR	rs12654264-?	NR	7E-20		3.227735	[2.54-3.92] unit increase	Illumina [32003504] (imputed)	N
1154	chr5	74648602	74648603	rs12654264	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	5q13.3	NR	rs12654264-?	NR	7E-19		2.815698	[2.19-3.44] unit increase	Illumina [31808917] (imputed)	N
1154	chr5	74648602	74648603	rs12654264	30718733	Moon S	2019-02-04	Sci Rep	The Korea Biobank Array: Design and Identification of Coding Variants Associated with Blood Biochemical Traits.	Low density lipoprotein cholesterol levels	6,949 Korean ancestry individuals	6,000 Korean ancestry individuals	5q13.3	MGGCR	rs12654264-?		1E-6				Affymetrix [at least 805769] (imputed)	N
1154	chr5	74648602	74648603	rs12654264	21909109	Kim YJ	2011-09-11	Nat Genet	Large-scale genome-wide association studies in East Asians identify new genetic loci influencing metabolic traits.	Metabolite levels	12,545 Korean ancestry individuals	Up to 30,395 East Asian ancestry individuals	5q13.3	HMGCR	rs12654264-T	0.48	1E-20	(LDL)	2.7106	[2.14-3.28] mg/dL decrease	Affymetrix [~ 2200000] (imputed)	N
1154	chr5	74648602	74648603	rs12654264	18193044	Kathiresan S	2008-01-13	Nat Genet	Six new loci associated with blood low-density lipoprotein cholesterol, high-density lipoprotein cholesterol or triglycerides in humans.	LDL cholesterol	2,758 European ancestry individuals	18,544 European ancestry individuals	5q13.3	HMGCR	rs12654264-T	0.39	1E-20		0.1	[0.08-0.12] unit increase	Affymetrix [389878]	N
1154	chr5	74651083	74651084	rs3846662	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	5q13.3		rs3846662-A	0.575889	3E-20		0.0377826	[0.03-0.046] unit increase	NR [11722792] (imputed)	N
1154	chr5	74651083	74651084	rs3846662	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large LDL	115,082 European ancestry individuals	NA	5q13.3		rs3846662-A	0.575889	2E-39		0.0544745	[0.046-0.063] unit decrease	NR [11722792] (imputed)	N
1154	chr5	74651083	74651084	rs3846662	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in LDL	115,082 European ancestry individuals	NA	5q13.3		rs3846662-A	0.575889	2E-38		0.0540079	[0.046-0.062] unit decrease	NR [11722792] (imputed)	N
1154	chr5	74651083	74651084	rs3846662	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in IDL	115,082 European ancestry individuals	NA	5q13.3		rs3846662-A	0.575889	5E-43		0.0555508	[0.048-0.063] unit decrease	NR [11722792] (imputed)	N
1154	chr5	74651083	74651084	rs3846662	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol levels	115,082 European ancestry individuals	NA	5q13.3		rs3846662-A	0.575889	7E-38		0.0520868	[0.044-0.06] unit decrease	NR [11722792] (imputed)	N
1154	chr5	74651083	74651084	rs3846662	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	5q13.3		rs3846662-A	0.575889	1E-11		0.0272794	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
1154	chr5	74651083	74651084	rs3846662	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small LDL	115,082 European ancestry individuals	NA	5q13.3		rs3846662-A	0.575889	1E-43		0.0577937	[0.05-0.066] unit decrease	NR [11722792] (imputed)	N
1154	chr5	74651083	74651084	rs3846662	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium LDL	115,082 European ancestry individuals	NA	5q13.3		rs3846662-A	0.575889	9E-34		0.0507227	[0.043-0.059] unit decrease	NR [11722792] (imputed)	N
1154	chr5	74651083	74651084	rs3846662	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large LDL	115,082 European ancestry individuals	NA	5q13.3		rs3846662-A	0.575889	3E-39		0.0544164	[0.046-0.063] unit decrease	NR [11722792] (imputed)	N
1154	chr5	74651083	74651084	rs3846662	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in LDL	115,082 European ancestry individuals	NA	5q13.3		rs3846662-A	0.575889	3E-39		0.0547273	[0.047-0.063] unit decrease	NR [11722792] (imputed)	N
1154	chr5	74651083	74651084	rs3846662	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in IDL	115,082 European ancestry individuals	NA	5q13.3		rs3846662-A	0.575889	3E-45		0.0569534	[0.049-0.065] unit decrease	NR [11722792] (imputed)	N
1154	chr5	74651083	74651084	rs3846662	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	LDL cholesterol levels	115,082 European ancestry individuals	NA	5q13.3		rs3846662-A	0.575889	6E-39		0.0543489	[0.046-0.063] unit decrease	NR [11722792] (imputed)	N
1154	chr5	74651083	74651084	rs3846662	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small LDL	115,082 European ancestry individuals	NA	5q13.3		rs3846662-A	0.575889	4E-38		0.05385	[0.046-0.062] unit decrease	NR [11722792] (imputed)	N
1154	chr5	74651083	74651084	rs3846662	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	5q13.3		rs3846662-A	0.575889	5E-36		0.0523238	[0.044-0.061] unit decrease	NR [11722792] (imputed)	N
1154	chr5	74651083	74651084	rs3846662	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large LDL	115,082 European ancestry individuals	NA	5q13.3		rs3846662-A	0.575889	3E-42		0.0559306	[0.048-0.064] unit decrease	NR [11722792] (imputed)	N
1154	chr5	74651083	74651084	rs3846662	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in LDL	115,082 European ancestry individuals	NA	5q13.3		rs3846662-A	0.575889	8E-41		0.0553584	[0.047-0.063] unit decrease	NR [11722792] (imputed)	N
1154	chr5	74651083	74651084	rs3846662	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large LDL particles	115,082 European ancestry individuals	NA	5q13.3		rs3846662-A	0.575889	8E-46		0.0591804	[0.051-0.067] unit decrease	NR [11722792] (imputed)	N
1154	chr5	74651083	74651084	rs3846662	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Clinical LDL cholesterol levels	115,082 European ancestry individuals	NA	5q13.3		rs3846662-A	0.575889	2E-41		0.0561315	[0.048-0.064] unit decrease	NR [11722792] (imputed)	N
1154	chr5	74651083	74651084	rs3846662	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	5q13.3		rs3846662-A	0.575889	2E-25		0.0428599	[0.035-0.051] unit decrease	NR [11722792] (imputed)	N
1154	chr5	74651083	74651084	rs3846662	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large LDL	115,082 European ancestry individuals	NA	5q13.3		rs3846662-A	0.575889	1E-38		0.0538731	[0.046-0.062] unit decrease	NR [11722792] (imputed)	N
1154	chr5	74651083	74651084	rs3846662	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in LDL	115,082 European ancestry individuals	NA	5q13.3		rs3846662-A	0.575889	2E-37		0.0532394	[0.045-0.061] unit decrease	NR [11722792] (imputed)	N
1154	chr5	74651083	74651084	rs3846662	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in IDL	115,082 European ancestry individuals	NA	5q13.3		rs3846662-A	0.575889	2E-41		0.0544551	[0.047-0.062] unit decrease	NR [11722792] (imputed)	N
1154	chr5	74651083	74651084	rs3846662	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	5q13.3		rs3846662-A	0.575889	3E-30		0.0464088	[0.038-0.054] unit decrease	NR [11722792] (imputed)	N
1154	chr5	74651083	74651084	rs3846662	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large LDL	115,082 European ancestry individuals	NA	5q13.3		rs3846662-A	0.575889	4E-40		0.054814	[0.047-0.063] unit decrease	NR [11722792] (imputed)	N
1154	chr5	74651083	74651084	rs3846662	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in IDL	115,082 European ancestry individuals	NA	5q13.3		rs3846662-A	0.575889	2E-42		0.0551852	[0.047-0.063] unit decrease	NR [11722792] (imputed)	N
1154	chr5	74651083	74651084	rs3846662	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	5q13.3	NR	rs3846662-?	NR	8E-14		2.800087	[2.07-3.53] unit increase	Illumina [32003504] (imputed)	N
1154	chr5	74651083	74651084	rs3846662	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	5q13.3	NR	rs3846662-?	NR	1E-12		2.364667	[1.71-3.02] unit increase	Illumina [31808917] (imputed)	N
1154	chr5	74651083	74651084	rs3846662	19060911	Aulchenko YS	2008-12-07	Nat Genet	Loci influencing lipid levels and coronary heart disease risk in 16 European population cohorts.	LDL cholesterol	17,083 European ancestry individuals, 714 Orcadian individuals	NA	5q13.3	HMGCR	rs3846662-G	0.44	2E-11		0.08	[NR] s.d. increase	Affymetrix, Illumina [up to 600000]	N
1154	chr5	74651083	74651084	rs3846662	19060911	Aulchenko YS	2008-12-07	Nat Genet	Loci influencing lipid levels and coronary heart disease risk in 16 European population cohorts.	Cholesterol, total	21,848 European ancestry individuals, 714 Orcadian individuals	NA	5q13.3	HMGCR	rs3846662-G	0.44	3E-19		0.09	[NR] s.d. increase	Affymetrix, Illumina [up to 600000]	N
1154	chr5	74651908	74651909	rs6882842	31393916	Andaleon A	2019-08-08	PLoS One	Genetically regulated gene expression underlies lipid traits in Hispanic cohorts.	Low density lipoprotein cholesterol levels	11,103 Hispanic or Latin American ancestry individuals	NA	5q13.3	NR	rs6882842-?	NR	4E-6		0.065	[0.038-0.092] unit increase	Illumina [1770809] (imputed)	N
1154	chr5	74655725	74655726	rs3846663	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total fatty acid levels	115,006 European ancestry individuals	NA	5q13.3		rs3846663-C	0.626072	3E-14		0.0320614	[0.024-0.04] unit decrease	NR [11722792] (imputed)	N
1154	chr5	74655725	74655726	rs3846663	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x short total sleep time interaction (2df test)	2,974 African American short sleepers, 365 Chinese ancestry short sleepers, 110 Asian ancestry short sleepers, at least 8,230 European ancestry short sleepers, 1,079 Hispanic/Latino short sleepers, 11,801 African American controls, 1,425 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,097 European ancestry controls, 4,023 Hispanic/Latino controls	at least 214 African American short sleepers, 629 East Asian ancestry short sleepers, up to 6,761 European ancestry short sleepers, 2,473 Hispanic short sleepers, at least 913 African American controls, 2,504 East Asian ancestry controls, up to 26,764 European ancestry controls, 9,854 Hispanic controls	5q13.3	HMGCR	rs3846663-?	NR	2E-48		2.273	[1.94-2.6] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1154	chr5	74655725	74655726	rs3846663	31566214	Kulminski AM	2019-09-30	J Gerontol A Biol Sci Med Sci	Quantitative and qualitative role of antagonistic heterogeneity in genetics of blood lipids.	Total cholesterol levels	29,902 European ancestry individuals	NA	5q13.3		rs3846663-T	0.38	2E-16		2.79	[2.12-3.46] unit increase	Affymetrix, Illumina [up to 2500000] (imputed)	N
1154	chr5	74655725	74655726	rs3846663	31566214	Kulminski AM	2019-09-30	J Gerontol A Biol Sci Med Sci	Quantitative and qualitative role of antagonistic heterogeneity in genetics of blood lipids.	Low density lipoprotein cholesterol levels	29,902 European ancestry individuals		5q13.3		rs3846663-T	0.38	2E-15		2.51	[1.88-3.14] unit increase	Affymetrix, Illumina [up to 2500000] (imputed)	N
1154	chr5	74655725	74655726	rs3846663	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	5q13.3	NR	rs3846663-?	NR	8E-23		3.577517	[2.86-4.29] unit increase	Illumina [32003504] (imputed)	N
1154	chr5	74655725	74655726	rs3846663	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	5q13.3	NR	rs3846663-?	NR	3E-20		3.000125	[2.36-3.64] unit increase	Illumina [31808917] (imputed)	N
1154	chr5	74655725	74655726	rs3846663	19197348	Lowe JK	2009-02-06	PLoS Genet	Genome-wide association studies in an isolated founder population from the Pacific Island of Kosrae.	Quantitative traits	2,906 Kosraen individuals	NA	5q13.3	COL4A3BP, HMGCR	rs3846663-T	0.39	6E-6	(TC)	0.19	[NR] mg/dL increase	Affymetrix [408775]	N
1154	chr5	74655725	74655726	rs3846663	19197348	Lowe JK	2009-02-06	PLoS Genet	Genome-wide association studies in an isolated founder population from the Pacific Island of Kosrae.	Quantitative traits	2,906 Kosraen individuals	NA	5q13.3	COL4A3BP, HMGCR	rs3846663-T	0.39	1E-6	(LDL-C)	0.21	[NR] mg/dL increase	Affymetrix [408775]	N
1154	chr5	74655725	74655726	rs3846663	19060906	Kathiresan S	2008-12-07	Nat Genet	Common variants at 30 loci contribute to polygenic dyslipidemia.	LDL cholesterol	19,840 European ancestry individuals	Up to 20,623 European ancestry individuals	5q13.3	HMGCR	rs3846663-T	0.38	8E-12		0.07	[0.03-0.11] s.d. increase	Affymetrix, Illumina [~ 2600000] (imputed)	N
1154	chr5	74656538	74656539	rs12916	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	VLDL cholesterol levels	115,082 European ancestry individuals	NA	5q13.3		rs12916-T	0.599659	1E-33		0.0508237	[0.043-0.059] unit decrease	NR [11722792] (imputed)	N
1154	chr5	74656538	74656539	rs12916	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium VLDL	115,082 European ancestry individuals	NA	5q13.3		rs12916-T	0.599659	2E-8		0.0228361	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
1154	chr5	74656538	74656539	rs12916	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very small VLDL	115,082 European ancestry individuals	NA	5q13.3		rs12916-T	0.599659	2E-31		0.0481566	[0.04-0.056] unit decrease	NR [11722792] (imputed)	N
1154	chr5	74656538	74656539	rs12916	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small VLDL	115,082 European ancestry individuals	NA	5q13.3		rs12916-T	0.599659	2E-18		0.0364422	[0.028-0.045] unit decrease	NR [11722792] (imputed)	N
1154	chr5	74656538	74656539	rs12916	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small LDL	115,082 European ancestry individuals	NA	5q13.3		rs12916-T	0.599659	2E-40		0.0560544	[0.048-0.064] unit decrease	NR [11722792] (imputed)	N
1154	chr5	74656538	74656539	rs12916	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium VLDL	115,082 European ancestry individuals	NA	5q13.3		rs12916-T	0.599659	2E-26		0.0445826	[0.036-0.053] unit decrease	NR [11722792] (imputed)	N
1154	chr5	74656538	74656539	rs12916	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium LDL	115,082 European ancestry individuals	NA	5q13.3		rs12916-T	0.599659	2E-32		0.0499804	[0.042-0.058] unit decrease	NR [11722792] (imputed)	N
1154	chr5	74656538	74656539	rs12916	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large VLDL	115,082 European ancestry individuals	NA	5q13.3		rs12916-T	0.599659	4E-9		0.0239994	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
1154	chr5	74656538	74656539	rs12916	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in VLDL	115,082 European ancestry individuals	NA	5q13.3		rs12916-T	0.599659	2E-15		0.0328573	[0.025-0.041] unit decrease	NR [11722792] (imputed)	N
1154	chr5	74656538	74656539	rs12916	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total free cholesterol levels	115,082 European ancestry individuals	NA	5q13.3		rs12916-T	0.599659	4E-41		0.0553254	[0.047-0.063] unit decrease	NR [11722792] (imputed)	N
1154	chr5	74656538	74656539	rs12916	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol minus HDL-C levels	115,082 European ancestry individuals	NA	5q13.3		rs12916-T	0.599659	2E-42		0.0572089	[0.049-0.065] unit decrease	NR [11722792] (imputed)	N
1154	chr5	74656538	74656539	rs12916	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Remnant cholesterol (non-HDL, non-LDL -cholesterol)	115,082 European ancestry individuals	NA	5q13.3		rs12916-T	0.599659	9E-44		0.0580953	[0.05-0.066] unit decrease	NR [11722792] (imputed)	N
1154	chr5	74656538	74656539	rs12916	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of apolipoprotein B to apolipoprotein A1 levels	115,082 European ancestry individuals	NA	5q13.3		rs12916-T	0.599659	4E-35		0.0513128	[0.043-0.059] unit decrease	NR [11722792] (imputed)	N
1154	chr5	74656538	74656539	rs12916	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	5q13.3		rs12916-T	0.599588	3E-31		0.0490905	[0.041-0.057] unit decrease	NR [11722792] (imputed)	N
1154	chr5	74656538	74656539	rs12916	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very small VLDL	115,082 European ancestry individuals	NA	5q13.3		rs12916-T	0.599659	3E-30		0.0472323	[0.039-0.055] unit decrease	NR [11722792] (imputed)	N
1154	chr5	74656538	74656539	rs12916	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large VLDL	115,082 European ancestry individuals	NA	5q13.3		rs12916-T	0.599659	5E-9		0.0237358	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
1154	chr5	74656538	74656539	rs12916	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small VLDL	115,082 European ancestry individuals	NA	5q13.3		rs12916-T	0.599659	1E-30		0.0483489	[0.04-0.057] unit decrease	NR [11722792] (imputed)	N
1154	chr5	74656538	74656539	rs12916	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium VLDL	115,082 European ancestry individuals	NA	5q13.3		rs12916-T	0.599659	4E-35		0.0519617	[0.044-0.06] unit decrease	NR [11722792] (imputed)	N
1154	chr5	74656538	74656539	rs12916	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large VLDL	115,082 European ancestry individuals	NA	5q13.3		rs12916-T	0.599659	4E-8		0.0222786	[0.014-0.03] unit decrease	NR [11722792] (imputed)	N
1154	chr5	74656538	74656539	rs12916	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in VLDL	115,082 European ancestry individuals	NA	5q13.3		rs12916-T	0.599659	4E-21		0.0392126	[0.031-0.047] unit decrease	NR [11722792] (imputed)	N
1154	chr5	74656538	74656539	rs12916	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Monounsaturated fatty acid levels	115,006 European ancestry individuals	NA	5q13.3		rs12916-T	0.599634	4E-8		0.0228919	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
1154	chr5	74656538	74656539	rs12916	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Linoleic acid levels	115,006 European ancestry individuals	NA	5q13.3		rs12916-T	0.599634	5E-34		0.0503054	[0.042-0.058] unit decrease	NR [11722792] (imputed)	N
1154	chr5	74656538	74656539	rs12916	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	5q13.3		rs12916-T	0.599659	4E-28		0.0460165	[0.038-0.054] unit decrease	NR [11722792] (imputed)	N
1154	chr5	74656538	74656539	rs12916	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	5q13.3		rs12916-T	0.599659	3E-36		0.051826	[0.044-0.06] unit decrease	NR [11722792] (imputed)	N
1154	chr5	74656538	74656539	rs12916	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	5q13.3		rs12916-T	0.599659	2E-11		0.0272855	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
1154	chr5	74656538	74656539	rs12916	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	5q13.3		rs12916-T	0.599659	5E-38		0.0542951	[0.046-0.063] unit decrease	NR [11722792] (imputed)	N
1154	chr5	74656538	74656539	rs12916	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	5q13.3		rs12916-T	0.599659	4E-40		0.0558332	[0.048-0.064] unit decrease	NR [11722792] (imputed)	N
1154	chr5	74656538	74656539	rs12916	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	5q13.3		rs12916-T	0.599659	8E-11		0.0264346	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
1154	chr5	74656538	74656539	rs12916	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in VLDL	115,082 European ancestry individuals	NA	5q13.3		rs12916-T	0.599659	2E-26		0.0443723	[0.036-0.053] unit decrease	NR [11722792] (imputed)	N
1154	chr5	74656538	74656539	rs12916	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very small VLDL particles	115,082 European ancestry individuals	NA	5q13.3		rs12916-T	0.599659	4E-34		0.0504221	[0.042-0.059] unit decrease	NR [11722792] (imputed)	N
1154	chr5	74656538	74656539	rs12916	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small VLDL particles	115,082 European ancestry individuals	NA	5q13.3		rs12916-T	0.599659	2E-17		0.0351539	[0.027-0.043] unit decrease	NR [11722792] (imputed)	N
1154	chr5	74656538	74656539	rs12916	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small LDL particles	115,082 European ancestry individuals	NA	5q13.3		rs12916-T	0.599659	8E-42		0.057145	[0.049-0.065] unit decrease	NR [11722792] (imputed)	N
1154	chr5	74656538	74656539	rs12916	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium VLDL particles	115,082 European ancestry individuals	NA	5q13.3		rs12916-T	0.599659	2E-33		0.0507134	[0.042-0.059] unit decrease	NR [11722792] (imputed)	N
1154	chr5	74656538	74656539	rs12916	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium LDL particles	115,082 European ancestry individuals	NA	5q13.3		rs12916-T	0.599659	8E-36		0.0527758	[0.044-0.061] unit decrease	NR [11722792] (imputed)	N
1154	chr5	74656538	74656539	rs12916	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large VLDL particles	115,082 European ancestry individuals	NA	5q13.3		rs12916-T	0.599659	7E-9		0.0235041	[0.016-0.031] unit decrease	NR [11722792] (imputed)	N
1154	chr5	74656538	74656539	rs12916	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of VLDL particles	115,082 European ancestry individuals	NA	5q13.3		rs12916-T	0.599659	4E-26		0.0442076	[0.036-0.052] unit decrease	NR [11722792] (imputed)	N
1154	chr5	74656538	74656539	rs12916	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of LDL particles	115,082 European ancestry individuals	NA	5q13.3		rs12916-T	0.599659	2E-44		0.0588679	[0.051-0.067] unit decrease	NR [11722792] (imputed)	N
1154	chr5	74656538	74656539	rs12916	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of IDL particles	115,082 European ancestry individuals	NA	5q13.3		rs12916-T	0.599659	2E-44		0.058411	[0.05-0.067] unit decrease	NR [11722792] (imputed)	N
1154	chr5	74656538	74656539	rs12916	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large VLDL	115,082 European ancestry individuals	NA	5q13.3		rs12916-T	0.599659	1E-20		0.0386767	[0.031-0.047] unit decrease	NR [11722792] (imputed)	N
1154	chr5	74656538	74656539	rs12916	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small VLDL	115,082 European ancestry individuals	NA	5q13.3		rs12916-T	0.599659	5E-29		0.0469552	[0.039-0.055] unit decrease	NR [11722792] (imputed)	N
1154	chr5	74656538	74656539	rs12916	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small LDL	115,082 European ancestry individuals	NA	5q13.3		rs12916-T	0.599659	2E-37		0.0540068	[0.046-0.062] unit decrease	NR [11722792] (imputed)	N
1154	chr5	74656538	74656539	rs12916	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium VLDL	115,082 European ancestry individuals	NA	5q13.3		rs12916-T	0.599659	3E-48		0.0609469	[0.053-0.069] unit decrease	NR [11722792] (imputed)	N
1154	chr5	74656538	74656539	rs12916	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium LDL	115,082 European ancestry individuals	NA	5q13.3		rs12916-T	0.599659	3E-30		0.0482115	[0.04-0.056] unit decrease	NR [11722792] (imputed)	N
1154	chr5	74656538	74656539	rs12916	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large VLDL	115,082 European ancestry individuals	NA	5q13.3		rs12916-T	0.599659	2E-21		0.0396257	[0.031-0.048] unit decrease	NR [11722792] (imputed)	N
1154	chr5	74656538	74656539	rs12916	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in VLDL	115,082 European ancestry individuals	NA	5q13.3		rs12916-T	0.599659	4E-38		0.0544008	[0.046-0.063] unit decrease	NR [11722792] (imputed)	N
1154	chr5	74656538	74656539	rs12916	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	5q13.3		rs12916-T	0.599659	4E-41		0.0548904	[0.047-0.063] unit decrease	NR [11722792] (imputed)	N
1154	chr5	74656538	74656539	rs12916	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	5q13.3		rs12916-T	0.599659	5E-16		0.033355	[0.025-0.041] unit decrease	NR [11722792] (imputed)	N
1154	chr5	74656538	74656539	rs12916	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	5q13.3		rs12916-T	0.599659	1E-32		0.0500741	[0.042-0.058] unit decrease	NR [11722792] (imputed)	N
1154	chr5	74656538	74656539	rs12916	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small LDL	115,082 European ancestry individuals	NA	5q13.3		rs12916-T	0.599659	1E-39		0.0555467	[0.047-0.064] unit decrease	NR [11722792] (imputed)	N
1154	chr5	74656538	74656539	rs12916	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	5q13.3		rs12916-T	0.599659	7E-47		0.0604353	[0.052-0.069] unit decrease	NR [11722792] (imputed)	N
1154	chr5	74656538	74656539	rs12916	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	5q13.3		rs12916-T	0.599659	1E-32		0.0502598	[0.042-0.059] unit decrease	NR [11722792] (imputed)	N
1154	chr5	74656538	74656539	rs12916	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	5q13.3		rs12916-T	0.599659	6E-16		0.0332742	[0.025-0.041] unit decrease	NR [11722792] (imputed)	N
1154	chr5	74656538	74656539	rs12916	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein B levels	115,082 European ancestry individuals	NA	5q13.3		rs12916-T	0.599659	1E-44		0.0590342	[0.051-0.067] unit decrease	NR [11722792] (imputed)	N
1154	chr5	74656538	74656539	rs12916	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	5q13.3		rs12916-C	0.41	4E-8		5.48	z score increase	Affymetrix [9061022] (imputed)	N
1154	chr5	74656538	74656539	rs12916	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	5q13.3		rs12916-C	NR	6E-168		0.0544	[0.05-0.058] unit increase	Affymetrix, Illumina [20536134] (imputed)	N
1154	chr5	74656538	74656539	rs12916	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls, 33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	5q13.3		rs12916-C	NR	2E-46		0.0696	[0.06-0.079] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1154	chr5	74656538	74656539	rs12916	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	5q13.3		rs12916-C	NR	5E-173		0.0602	[0.056-0.064] unit increase	Affymetrix, Illumina [20521447] (imputed)	N
1154	chr5	74656538	74656539	rs12916	33893285	Guindo-Martinez M	2021-04-23	Nat Commun	The impact of non-additive genetic associations on age-related complex diseases.	Dyslipidemia	30,244 European ancestry cases, 26,393 European ancestry controls	NA	5q13.3		rs12916-C	0.409	4E-18		1.12		Affymetrix [15679186] (imputed)	N
1154	chr5	74656538	74656539	rs12916	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Total cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	5q13.3	HMGCR	rs12916-?		4E-56		0.0545	[0.048-0.061] unit increase	Illumina [31500000] (imputed)	N
1154	chr5	74656538	74656539	rs12916	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Low density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	5q13.3	HMGCR	rs12916-?		7E-58		0.0662	[0.058-0.074] unit increase	Illumina [31500000] (imputed)	N
1154	chr5	74656538	74656539	rs12916	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	5q13.3	HMGCR	rs12916-T	0.599461	2E-187		0.0621277	[0.058-0.066] unit decrease	Affymetrix [NR] (imputed)	N
1154	chr5	74656538	74656539	rs12916	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	5q13.3	HMGCR	rs12916-T	0.599513	9E-148		0.0549232	[0.051-0.059] unit decrease	Affymetrix [NR] (imputed)	N
1154	chr5	74656538	74656539	rs12916	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	5q13.3	HMGCR	rs12916-?	NR	1E-222		0.083	[0.078-0.088] unit increase	Affymetrix [5701386] (imputed)	N
1154	chr5	74656538	74656539	rs12916	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	5q13.3	NR	rs12916-?	NR	2E-24		3.667939	[2.96-4.37] unit increase	Illumina [32003504] (imputed)	N
1154	chr5	74656538	74656539	rs12916	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	5q13.3	NR	rs12916-?	NR	2E-21		3.062396	[2.43-3.69] unit increase	Illumina [31808917] (imputed)	N
1154	chr5	74656538	74656539	rs12916	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls	NA	5q13.3	HMGCR	rs12916-C	0.40104	1E-24		0.05866347	[0.047-0.07] unit increase	Affymetrix [7288503] (imputed)	N
1154	chr5	74656538	74656539	rs12916	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	LDL cholesterol levels	up to 23,353 African ancestry individuals, 13,171 Asian ancestry individuals, up to 82,522 European ancestry individuals, 6,646 Hispanic individuals	NA	5q13.3		rs12916-T	0.6028	4E-39		2.0454	[1.74-2.35] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1154	chr5	74656538	74656539	rs12916	30670697	Kilpelainen TO	2019-01-22	Nat Commun	Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity.	LDL cholesterol x physical activity interaction (2df test)	7,260 African American inactive individuals, 12,761 African American active individuals, 2,740 Asian ancestry inactive individuals, 3,615 Asian ancestry active individuals, 22,378 European ancestry inactive individuals, 55,310 European ancestry active individuals, 2,163 Hispanic or Latin American inactive individuals, 3,461 Hispanic or Latin American active individuals	571 African American inactive individuals, 1,521 African American active individuals, 1,217 South African Black ancestry inactive individuals, 389 South African Black ancestry active individuals, 2,495 East Asian ancestry inactive individuals, 1,947 East Asian ancestry active individuals,  724 South Asian ancestry inactive individuals, 1,425 South Asian ancestry active individuals,  33,796 European ancestry inactive individuals, 50,812 European ancestry active individuals, 2,578 Hispanic inactive individuals, 8,661 Hispanic active individuals	5q13.3	NR	rs12916-T	0.6022	1E-83				Affymetrix, Illumina [at least 2500000] (imputed)	N
1154	chr5	74656538	74656539	rs12916	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	5q13.3		rs12916-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1154	chr5	74656538	74656539	rs12916	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	5q13.3	HMGCR	rs12916-T	0.6225	7E-94		0.0556	[0.05-0.061] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1154	chr5	74656538	74656539	rs12916	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	5q13.3	NR	rs12916-T	NR	3E-68		0.074	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1154	chr5	74656538	74656539	rs12916	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	5q13.3	NR	rs12916-T	0.591	5E-59	(EA)	0.076	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1154	chr5	74656538	74656539	rs12916	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	5q13.3	NR	rs12916-T	0.482	8E-8	(East Asian)	0.086	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1154	chr5	74656538	74656539	rs12916	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	5q13.3	NR	rs12916-T	NR	4E-79		0.081	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1154	chr5	74656538	74656539	rs12916	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	5q13.3	NR	rs12916-T	0.605	2E-6	(Hispanic)	0.074	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1154	chr5	74656538	74656539	rs12916	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	5q13.3	NR	rs12916-T	0.591	1E-66	(EA)	0.083	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1154	chr5	74656538	74656539	rs12916	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	5q13.3	NR	rs12916-T	0.482	2E-8	(East Asian)	0.091	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1154	chr5	74656538	74656539	rs12916	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Total cholesterol levels	32,576 East Asian ancestry individuals, 187,365 European ancestry individuals	10,855 Chinese ancestry individuals	5q13.3	HMGCR	rs12916-T	0.569	5E-91	(Trans-ethnic initial)	0.0684	[0.061-0.075] unit decrease (EA Beta values)	Affymetrix, Illumina [up to 1900000] (imputed)	N
1154	chr5	74656538	74656539	rs12916	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Total cholesterol levels	32,576 East Asian ancestry individuals, 187,365 European ancestry individuals	10,855 Chinese ancestry individuals	5q13.3	HMGCR	rs12916-T	0.475	6E-22	(Asian initial, BMI unadjusted)	0.0775	[0.062-0.093] unit decrease	Affymetrix, Illumina [up to 1900000] (imputed)	N
1154	chr5	74656538	74656539	rs12916	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	LDL cholesterol levels	32,285 East Asian ancestry individuals, 173,082 European ancestry individuals	8,478 Chinese ancestry individuals	5q13.3	HMGCR	rs12916-T	0.569	3E-95	(Trans-ethnic initial)	0.0733	[0.066-0.081] unit decrease (EA Beta value)	Affymetrix, Illumina [~ 1900000] (imputed)	N
1154	chr5	74656538	74656539	rs12916	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	LDL cholesterol levels	32,285 East Asian ancestry individuals, 173,082 European ancestry individuals	8,478 Chinese ancestry individuals	5q13.3	HMGCR	rs12916-T	0.475	1E-21	(Asian initial, BMI unadjusted)	0.0773	[0.061-0.093] unit decrease	Affymetrix, Illumina [~ 1900000] (imputed)	N
1154	chr5	74656538	74656539	rs12916	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	Cholesterol, total	19,259 British ancestry individuals from 6863 families.	NA	5q13.3	HMGCR	rs12916-C	0.397	6E-11		0.07291148	[0.051-0.095] mg/dl increase	Illumina [24111857] (imputed)	N
1154	chr5	74656538	74656539	rs12916	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	5q13.3	HMGCR	rs12916-C	0.40	8E-78		0.073	[NR] unit increase	NR [NR] (imputed)	N
1154	chr5	74656538	74656539	rs12916	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	5q13.3	HMGCR	rs12916-C	0.4	5E-74		0.68	[NR] unit increase	NR [NR] (imputed)	N
1154	chr5	74656538	74656539	rs12916	20864672	Waterworth DM	2010-09-23	Arterioscler Thromb Vasc Biol	Genetic variants influencing circulating lipid levels and risk of coronary artery disease.	LDL cholesterol	up to 17,723 European ancestry individuals	up to 37,774 European ancestry individuals, up to 9,665 Indian Asian ancestry individuals	5q13.3	HMGCR	rs12916-T	0.62	1E-11		0.02	[0.01-0.03] unit decrease	Affymetrix, Illumina, Perlegen [2155369] (imputed)	N
1154	chr5	74656538	74656539	rs12916	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	LDL cholesterol	95,454 European ancestry individuals	NA	5q13.3	HMGCR	rs12916-C	0.39	5E-45		2.45	[2.1-2.8] mg/dL increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1154	chr5	74656538	74656539	rs12916	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	Cholesterol, total	100,184 European ancestry individuals	NA	5q13.3	HMGCR	rs12916-C	0.39	9E-47		2.84	[2.45-3.23] mg/dL increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1154	chr5	74666491	74666492	rs7733436	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	5q13.3		rs7733436-C	0.618536	5E-29		0.0449359	[0.037-0.053] unit increase	NR [11722792] (imputed)	N
1154	chr5	74666491	74666492	rs7733436	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	5q13.3		rs7733436-C	0.618536	7E-30		0.0448717	[0.037-0.053] unit decrease	NR [11722792] (imputed)	N
1154	chr5	74666491	74666492	rs7733436	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	5q13.3		rs7733436-C	0.618536	2E-18		0.0348307	[0.027-0.043] unit decrease	NR [11722792] (imputed)	N
1154	chr5	74666491	74666492	rs7733436	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	5q13.3		rs7733436-C	0.618536	1E-22		0.0389813	[0.031-0.047] unit decrease	NR [11722792] (imputed)	N
1154	chr5	74666491	74666492	rs7733436	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	5q13.3		rs7733436-C	0.618536	6E-25		0.0413968	[0.034-0.049] unit decrease	NR [11722792] (imputed)	N
1154	chr5	74666491	74666492	rs7733436	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	5q13.3		rs7733436-C	0.618536	2E-15		0.0329164	[0.025-0.041] unit decrease	NR [11722792] (imputed)	N
1154	chr5	74666491	74666492	rs7733436	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	5q13.3	COL4A3BP	rs7733436-T	0.381116	1E-19		0.020959629	[0.016-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1154	chr5	74666491	74666492	rs7733436	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	5q13.3	COL4A3BP	rs7733436-T	0.381082	2E-10		0.014743211	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
1154	chr5	74682473	74682474	rs17562727	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	5q13.3	NR	rs17562727-C	NR	2E-12		0.0517	[0.037-0.066] unit increase	Affymetrix [9000000] (imputed)	N
1154	chr5	74682473	74682474	rs17562727	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	5q13.3	NR	rs17562727-C	NR	1E-13		0.0543	[0.04-0.069] unit increase	Affymetrix [9000000] (imputed)	N
1154	chr5	74682473	74682474	rs17562727	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	5q13.3	NR	rs17562727-C	NR	2E-11		0.0491	[0.035-0.063] unit increase	Affymetrix [9000000] (imputed)	N
1154	chr5	74692775	74692776	rs6453133	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	5q13.3		rs6453133-G	NR	2E-11		0.0438	[0.031-0.057] unit decrease	Affymetrix, Illumina [25845091] (imputed)	N
1154	chr5	74701765	74701766	rs17671845	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5q13.3	HMGCR	rs17671845-?	NR	1E-6	(asparagine)	0.45391425	[0.27-0.64] unit increase	Affymetrix [at least 2500000] (imputed)	N
1155	chr5	74717760	74717761	rs80324692	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	5q13.3	NR	rs80324692-?	NR	5E-8				Affymetrix [~ 8270000] (imputed)	N
1155	chr5	74745528	74745530	rs200174418	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	5q13.3	COL4A3BP	rs200174418-?	NR	2E-18	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1155	chr5	74745528	74745530	rs200174418	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	5q13.3	COL4A3BP	rs200174418-?	NR	1E-18				Affymetrix, Illumina [NR] (imputed)	N
1155	chr5	74745528	74745530	rs200174418	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	5q13.3	COL4A3BP	rs200174418-?	NR	5E-213	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1155	chr5	74745528	74745530	rs200174418	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	5q13.3	COL4A3BP	rs200174418-?	NR	2E-18				Affymetrix, Illumina [NR] (imputed)	N
1155	chr5	74745528	74745530	rs200174418	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	5q13.3	COL4A3BP	rs200174418-?	NR	6E-9	(EA)	2.029	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1155	chr5	74745528	74745530	rs200174418	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	5q13.3	COL4A3BP	rs200174418-?	NR	5E-11		2.09	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1155	chr5	74745528	74745530	rs200174418	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	5q13.3	COL4A3BP	rs200174418-?	NR	9E-11		2.594	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1155	chr5	74745528	74745530	rs200174418	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	5q13.3	COL4A3BP	rs200174418-?	NR	3E-8	(EA)	2.072	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1155	chr5	74749146	74749147	rs62366598	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	5q13.3	NR	rs62366598-T	NR	2E-12		0.0335	[0.024-0.043] unit decrease	Affymetrix [9000000] (imputed)	N
1155	chr5	74749146	74749147	rs62366598	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	5q13.3	NR	rs62366598-T	NR	4E-13		0.0345	[0.025-0.044] unit decrease	Affymetrix [9000000] (imputed)	N
1155	chr5	74749146	74749147	rs62366598	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	5q13.3	NR	rs62366598-T	NR	2E-9		0.0286	[0.019-0.038] unit decrease	Affymetrix [9000000] (imputed)	N
1155	chr5	74749968	74749969	rs116070404	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	5q13.3	NR	rs116070404-C	NR	5E-9		0.0313	[0.021-0.042] unit decrease	Affymetrix [9000000] (imputed)	N
1155	chr5	74749968	74749969	rs116070404	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	5q13.3	NR	rs116070404-C	NR	4E-10		0.0335	[0.023-0.044] unit decrease	Affymetrix [9000000] (imputed)	N
1155	chr5	74757555	74757556	rs4704220	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in IDL	115,082 European ancestry individuals	NA	5q13.3		rs4704220-G	0.61763	6E-10		0.025547	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
1155	chr5	74759182	74759183	rs4704221	27790247	He L	2016-11-03	Front Genet	Pleiotropic Meta-Analyses of Longitudinal Studies Discover Novel Genetic Variants Associated with Age-Related Diseases.	Age-related diseases, mortality and associated endophenotypes	9,618 European ancestry individuals	19,796 European ancestry individuals	5q13.3	NR	rs4704221-?	NR	2E-8				Affymetrix [NR]	N
1155	chr5	74759182	74759183	rs4704221	27790247	He L	2016-11-03	Front Genet	Pleiotropic Meta-Analyses of Longitudinal Studies Discover Novel Genetic Variants Associated with Age-Related Diseases.	Age-related disease endophenotypes	9,618 European ancestry individuals	19,796 European ancestry individuals	5q13.3	NR	rs4704221-?	NR	5E-11				Affymetrix [NR]	N
1155	chr5	74768346	74768347	rs6873472	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	Cholesterol, total	19,259 British ancestry individuals from 6863 families.	NA	5q13.3	NR	rs6873472-A	0.377963	8E-9		0.06486272	[0.043-0.087] mg/dl increase	Illumina [24111857] (imputed)	N
1155	chr5	74808879	74808880	rs4604177	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Total cholesterol levels	22,814 East Asian ancestry individuals	57,490 East Asian ancestry individuals	5q13.3	HMGCR	rs4604177-T	0.53	4E-16	(BMI unadjusted)	0.081	[0.061-0.101] unit increase	Affymetrix, Illumina [~ 2400000] (imputed)	N
1155	chr5	74808879	74808880	rs4604177	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	LDL cholesterol levels	22,526 East Asian ancestry individuals	37,842 East Asian ancestry individuals	5q13.3	HMGCR	rs4604177-T	0.53	1E-16	(BMI unadjusted)	0.083	[0.063-0.103] unit increase	Affymetrix, Illumina [~ 2400000] (imputed)	N
1155	chr5	74816943	74816944	rs5744552	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total phospholipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	5q13.3		rs5744552-C	0.615886	6E-22		0.0388764	[0.031-0.047] unit decrease	NR [11722792] (imputed)	N
1155	chr5	74816943	74816944	rs5744552	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholines levels	115,006 European ancestry individuals	NA	5q13.3		rs5744552-C	0.615871	1E-15		0.0320198	[0.024-0.04] unit decrease	NR [11722792] (imputed)	N
1155	chr5	74816943	74816944	rs5744552	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Sphingomyelin levels	115,006 European ancestry individuals	NA	5q13.3		rs5744552-C	0.615871	8E-27		0.0425113	[0.035-0.05] unit decrease	NR [11722792] (imputed)	N
1155	chr5	74816943	74816944	rs5744552	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Saturated fatty acid levels	115,006 European ancestry individuals	NA	5q13.3		rs5744552-C	0.615871	2E-10		0.0267472	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
1155	chr5	74816943	74816944	rs5744552	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphoglycerides levels	115,006 European ancestry individuals	NA	5q13.3		rs5744552-C	0.615871	5E-12		0.0276551	[0.02-0.036] unit decrease	NR [11722792] (imputed)	N
1155	chr5	74816943	74816944	rs5744552	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphatidylcholine levels	115,006 European ancestry individuals	NA	5q13.3		rs5744552-C	0.615871	3E-12		0.027753	[0.02-0.036] unit decrease	NR [11722792] (imputed)	N
1155	chr5	74817393	74817394	rs3094246	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	5q13.3	NR	rs3094246-G	NR	4E-10		0.036	[0.025-0.047] unit decrease	Affymetrix [9000000] (imputed)	N
1155	chr5	74817393	74817394	rs3094246	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	5q13.3	NR	rs3094246-G	NR	1E-12		0.0408	[0.029-0.052] unit decrease	Affymetrix [9000000] (imputed)	N
1156	chr5	74846612	74846613	rs5744598	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	5q13.3		rs5744598-A	0.358552841	2E-10		0.94649076	[0.93065503-0.962595923]	Illumina [8919992] (imputed)	N
1156	chr5	74865586	74865587	rs5744632	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	5q13.3	NR	rs5744632-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
1156	chr5	74870056	74870057	rs3797579	28334935	Raffield LM	2017-05-15	Hum Mol Genet	Genome-wide association study of iron traits and relation to diabetes in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL): potential genomic intersection of iron and glucose regulation?	Iron status biomarkers (transferrin saturation)	12,589 Hispanic/Latino individuals	NA	5q13.3	POLK	rs3797579-A	NR	9E-7		0.907	[0.54-1.27] unit decrease	Illumina [27700000] (imputed)	N
1156	chr5	74877802	74877803	rs5744672	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	Cholesterol, total	19,259 British ancestry individuals from 6863 families.	NA	5q13.3	NR	rs5744672-C	0.378799	1E-8		0.06437605	[0.042-0.086] mg/dl increase	Illumina [24111857] (imputed)	N
1156	chr5	74879889	74879890	rs5744680	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	5q13.3		rs5744680-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1156	chr5	74879889	74879890	rs5744680	27790247	He L	2016-11-03	Front Genet	Pleiotropic Meta-Analyses of Longitudinal Studies Discover Novel Genetic Variants Associated with Age-Related Diseases.	Age-related diseases, mortality and associated endophenotypes	9,618 European ancestry individuals	19,796 European ancestry individuals	5q13.3	NR	rs5744680-?	NR	3E-8				Affymetrix [NR]	N
1156	chr5	74879889	74879890	rs5744680	27790247	He L	2016-11-03	Front Genet	Pleiotropic Meta-Analyses of Longitudinal Studies Discover Novel Genetic Variants Associated with Age-Related Diseases.	Age-related disease endophenotypes	9,618 European ancestry individuals	19,796 European ancestry individuals	5q13.3	NR	rs5744680-?	NR	6E-11				Affymetrix [NR]	N
1156	chr5	74887613	74887614	rs767676	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for LDL particles	115,082 European ancestry individuals	NA	5q13.3		rs767676-T	0.765376	5E-10		0.0295661	[0.02-0.039] unit decrease	NR [11722792] (imputed)	N
1156	chr5	74898751	74898752	rs2287711	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	5q13.3		rs2287711-C	0.358385549	2E-8		0.053547975	[0.035-0.072] unit decrease	Illumina [13429769] (imputed)	N
1156	chr5	74906656	74906657	rs34598164	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	5q13.3	ANKDD1B	rs34598164-C	0.274542	4E-10		0.01833058	[0.013-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1156	chr5	74906962	74906963	rs7703282	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	72,866 East Asian ancestry individuals	NA	5q13.3		rs7703282-C	0.552543	2E-32		0.0583634	[0.049-0.068] unit increase	Illumina [13461863] (imputed)	N
1156	chr5	74909971	74909972	rs11748027	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	135,808 East Asian ancestry individuals	NA	5q13.3		rs11748027-T	0.55474	6E-40		0.0485532	[0.041-0.056] unit increase	Illumina [13476599] (imputed)	N
1156	chr5	74909971	74909972	rs11748027	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Total cholesterol levels	128,305 Japanese ancestry individuals	NA	5q13.3	ANKDD1B	rs11748027-?	NR	3E-36		0.05115	[0.043-0.059] unit increase novel	Illumina [6108953] (imputed)	N
1156	chr5	74910869	74910870	rs984976	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	5q13.3		rs984976-A	0.616062	2E-21		0.0392441	[0.031-0.047] unit increase	NR [11722792] (imputed)	N
1156	chr5	74910869	74910870	rs984976	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	5q13.3		rs984976-A	0.616062	1E-22		0.0399122	[0.032-0.048] unit increase	NR [11722792] (imputed)	N
1156	chr5	74910869	74910870	rs984976	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	5q13.3	NR	rs984976-?	NR	2E-10		2.391796	[1.65-3.13] unit increase	Illumina [32003504] (imputed)	N
1156	chr5	74910869	74910870	rs984976	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	5q13.3	NR	rs984976-?	NR	1E-9		2.037596	[1.38-2.7] unit increase	Illumina [31808917] (imputed)	N
1156	chr5	74910869	74910870	rs984976	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	5q13.3	NR	rs984976-A	NR	4E-53		0.065	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1156	chr5	74910869	74910870	rs984976	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	5q13.3	NR	rs984976-A	0.603	1E-45	(EA)	0.066	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1156	chr5	74910869	74910870	rs984976	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	5q13.3	NR	rs984976-A	0.466	7E-8	(East Asian)	0.086	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1156	chr5	74910869	74910870	rs984976	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	5q13.3	NR	rs984976-A	NR	9E-63		0.073	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1156	chr5	74910869	74910870	rs984976	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	5q13.3	NR	rs984976-A	0.603	3E-52	(EA)	0.073	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1156	chr5	74910869	74910870	rs984976	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	5q13.3	NR	rs984976-A	0.466	5E-9	(East Asian)	0.095	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1156	chr5	74919408	74919409	rs6861279	31902109	Li D	2020-01-04	Genes Genomics	Progressive effects of single-nucleotide polymorphisms on 16 phenotypic traits based on longitudinal data.	Cholesterol	6,840 Korean ancestry individuals	NA	5q13.3	ANKDD1B	rs6861279-T	0.3386	4E-8	(total cholesterol)	2.784	NR unit increase	Affymetrix [305158]	N
1156	chr5	74926245	74926246	rs16872665	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5q13.3	C5orf37	rs16872665-?	NR	5E-7	(asparagine)	0.4670182	[0.29-0.65] unit increase	Affymetrix [at least 2500000] (imputed)	N
1156	chr5	74934008	74934009	rs34341	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	5q13.3		rs34341-A	0.425523	4E-22		0.0392222	[0.031-0.047] unit increase	NR [11722792] (imputed)	N
1156	chr5	74934008	74934009	rs34341	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	5q13.3	NR	rs34341-T	0.5248	5E-25		0.0403	[0.033-0.048] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1156	chr5	74934008	74934009	rs34341	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	5q13.3	NR	rs34341-T	0.576182	3E-9		0.0149201	[0.0099-0.0199] unit increase	Affymetrix [16585745] (imputed)	N
1156	chr5	74934008	74934009	rs34341	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	5q13.3	COL4A3BP, POLK	rs34341-A	0.438944	6E-6	(females)	0.01588	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1156	chr5	74934008	74934009	rs34341	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	5q13.3	COL4A3BP, POLK	rs34341-A	0.438944	3E-18	(females)	0.02532	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1156	chr5	74934008	74934009	rs34341	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	5q13.3	COL4A3BP, POLK	rs34341-A	0.438944	2E-10	(males)	0.005018	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1156	chr5	74934008	74934009	rs34341	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	5q13.3	COL4A3BP, POLK	rs34341-A	0.438944	1E-14		0.01597	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1156	chr5	74934008	74934009	rs34341	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	5q13.3	ANKDD1B	rs34341-A	0.4242	8E-10		0.002	[0.0014-0.0026] unit increase	Affymetrix [15275733] (imputed)	N
1156	chr5	74951900	74951901	rs7717355	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	5q13.3	NR	rs7717355-?	NR	3E-13				Affymetrix [~ 8270000] (imputed)	N
1156	chr5	74955840	74955841	rs253412	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	5q13.3	NR	rs253412-G	0.3476	3E-21		0.0459	[0.036-0.055] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
1156	chr5	74955922	74955923	rs253413	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	5q13.3		rs253413-A	0.64461995	2E-11		0.06933334	[0.049-0.089] unit increase	Illumina [13134967] (imputed)	N
1156	chr5	74955922	74955923	rs253413	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	5q13.3		rs253413-A	NR	5E-12		0.057	[0.041-0.073] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1156	chr5	74959969	74959970	rs34355	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	5q13.3		rs34355-A	NR	4E-9		0.009	[0.0061-0.0119] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1156	chr5	74962767	74962768	rs6453139	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	5q13.3	NR	rs6453139-T	NR	9E-19		0.0478	[0.037-0.058] unit increase	Affymetrix [9000000] (imputed)	N
1156	chr5	74962767	74962768	rs6453139	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	5q13.3	NR	rs6453139-T	NR	3E-17		0.0457	[0.035-0.056] unit increase	Affymetrix [9000000] (imputed)	N
1156	chr5	74962767	74962768	rs6453139	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	5q13.3	NR	rs6453139-T	NR	2E-11		0.0365	[0.026-0.047] unit increase	Affymetrix [9000000] (imputed)	N
1156	chr5	74964106	74964107	rs7715739	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	5q13.3	NR	rs7715739-A	NR	2E-20		0.0444	[0.035-0.054] unit increase	Affymetrix [9000000] (imputed)	N
1156	chr5	74964106	74964107	rs7715739	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	5q13.3	NR	rs7715739-A	NR	1E-20		0.0448	[0.035-0.054] unit increase	Affymetrix [9000000] (imputed)	N
1156	chr5	74964106	74964107	rs7715739	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	5q13.3	NR	rs7715739-A	NR	6E-17		0.0403	[0.031-0.05] unit increase	Affymetrix [9000000] (imputed)	N
1156	chr5	74965553	74965554	rs42302	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	5q13.3		rs42302-A	0.3441	6E-9		0.0086	[0.0057-0.0115] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1156	chr5	74965553	74965554	rs42302	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	5q13.3	Intergenic	rs42302-A	0.3441	7E-9	(MTAG)	0.008	[0.0053-0.0107] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1156	chr5	74967385	74967386	rs40060	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Diastolic blood pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	5q13.3	NR	rs40060-T	0.6124	2E-7		0.141	mmHg decrease	Illumina [242296]	N
1156	chr5	74967692	74967693	rs34359	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large HDL	115,082 European ancestry individuals	NA	5q13.3		rs34359-G	0.347077	5E-16		0.0316709	[0.024-0.039] unit increase	NR [11722792] (imputed)	N
1156	chr5	74967707	74967708	rs34360	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large HDL particles	115,082 European ancestry individuals	NA	5q13.3		rs34360-C	0.347661	2E-19		0.0351476	[0.027-0.043] unit increase	NR [11722792] (imputed)	N
1156	chr5	74967707	74967708	rs34360	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	5q13.3	NA	rs34360-A	0.6482	2E-56		0.0269	[0.024-0.03] unit increase	NR [~ 27400000] (imputed)	N
1156	chr5	74971845	74971846	rs34361	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	5q13.3	NR	rs34361-?	NR	2E-8		2.013443	[1.31-2.71] unit decrease	Illumina [32003504] (imputed)	N
1156	chr5	74971845	74971846	rs34361	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	5q13.3	NR	rs34361-?	NR	3E-8		1.774677	[1.15-2.4] unit decrease	Illumina [31808917] (imputed)	N
1156	chr5	74971845	74971846	rs34361	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	5q13.3	NR	rs34361-A	NR	4E-31		0.051	unit increase	Affymetrix [at least 7091467] (imputed)	N
1156	chr5	74971845	74971846	rs34361	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	5q13.3	NR	rs34361-A	0.358	1E-26	(EA)	0.051	unit increase	Affymetrix [at least 7091467] (imputed)	N
1156	chr5	74971845	74971846	rs34361	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	5q13.3	NR	rs34361-A	NR	9E-36		0.055	unit increase	Affymetrix [at least 7091467] (imputed)	N
1156	chr5	74971845	74971846	rs34361	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	5q13.3	NR	rs34361-A	0.358	3E-30	(EA)	0.056	unit increase	Affymetrix [at least 7091467] (imputed)	N
1157	chr5	74979865	74979866	rs4703676	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	5q13.3	NR	rs4703676-C	NR	5E-36		0.0364	[0.031-0.042] unit increase	Affymetrix [9000000] (imputed)	N
1157	chr5	74979865	74979866	rs4703676	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	5q13.3	NR	rs4703676-C	NR	8E-33		0.0347	[0.029-0.04] unit increase	Affymetrix [9000000] (imputed)	N
1157	chr5	74979865	74979866	rs4703676	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	5q13.3	NR	rs4703676-C	NR	8E-23		0.0286	[0.023-0.034] unit increase	Affymetrix [9000000] (imputed)	N
1157	chr5	74988368	74988369	rs888789	24861553	Wen W	2014-05-26	Hum Mol Genet	Meta-analysis of genome-wide association studies in East Asian-ancestry populations identifies four new loci for body mass index.	Body mass index	82,438 East Asian ancestry individuals, 4,301 South East Asian ancestry individuals	Up to 47,352 East Asian ancestry individuals	5q13.3	FLJ35779	rs888789-A	0.46	4E-6		0.024	[0.014-0.034] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1157	chr5	74991848	74991849	rs6881648	32632093	Guo Y	2020-07-06	Nat Commun	A genome-wide cross-phenotype meta-analysis of the association of blood pressure with migraine.	Migraine and/or diastolic blood pressure	757,601 European ancestry individuals with blood pressure measurements, 59,674 European ancestry migraine cases, 316,078 European ancestry controls	NA	5q13.3	NR	rs6881648-?	NR	3E-26				NR [up to 7000000]	N
1157	chr5	74991848	74991849	rs6881648	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	5q13.3	POC5	rs6881648-C	0.56	2E-12	(Japanese)	0.024	[0.018-0.03] unit decrease	Illumina [6108953] (imputed)	N
1157	chr5	74997755	74997756	rs10057967	27790247	He L	2016-11-03	Front Genet	Pleiotropic Meta-Analyses of Longitudinal Studies Discover Novel Genetic Variants Associated with Age-Related Diseases.	Age-related diseases, mortality and associated endophenotypes	9,618 European ancestry individuals	19,796 European ancestry individuals	5q13.3	NR	rs10057967-?	NR	3E-6				Affymetrix [NR]	N
1157	chr5	75003677	75003678	rs2307111	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	5q13.3		rs2307111-T	0.603405	4E-11		0.0244178	[0.017-0.032] unit decrease	NR [11722792] (imputed)	N
1157	chr5	75003677	75003678	rs2307111	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in HDL	115,082 European ancestry individuals	NA	5q13.3		rs2307111-T	0.603405	5E-8		0.0206658	[0.013-0.028] unit decrease	NR [11722792] (imputed)	N
1157	chr5	75003677	75003678	rs2307111	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total concentration of lipoprotein particles	115,082 European ancestry individuals	NA	5q13.3		rs2307111-T	0.603405	2E-9		0.0239128	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
1157	chr5	75003677	75003678	rs2307111	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	5q13.3		rs2307111-T	0.603405	6E-13		0.0288501	[0.021-0.037] unit increase	NR [11722792] (imputed)	N
1157	chr5	75003677	75003678	rs2307111	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large HDL	115,082 European ancestry individuals	NA	5q13.3		rs2307111-T	0.603405	7E-9		0.0215126	[0.014-0.029] unit decrease	NR [11722792] (imputed)	N
1157	chr5	75003677	75003678	rs2307111	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	HDL cholesterol levels	115,082 European ancestry individuals	NA	5q13.3		rs2307111-T	0.603405	5E-11		0.0248324	[0.017-0.032] unit decrease	NR [11722792] (imputed)	N
1157	chr5	75003677	75003678	rs2307111	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	5q13.3		rs2307111-T	0.603432	1E-8		0.0213748	[0.014-0.029] unit increase	NR [11722792] (imputed)	N
1157	chr5	75003677	75003678	rs2307111	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	5q13.3		rs2307111-T	0.603405	8E-19		0.0331994	[0.026-0.041] unit decrease	NR [11722792] (imputed)	N
1157	chr5	75003677	75003678	rs2307111	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	5q13.3		rs2307111-T	0.603405	2E-13		0.0271232	[0.02-0.034] unit decrease	NR [11722792] (imputed)	N
1157	chr5	75003677	75003678	rs2307111	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in HDL	115,082 European ancestry individuals	NA	5q13.3		rs2307111-T	0.603405	8E-13		0.0267853	[0.019-0.034] unit decrease	NR [11722792] (imputed)	N
1157	chr5	75003677	75003678	rs2307111	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	5q13.3		rs2307111-T	0.603405	3E-13		0.0269965	[0.02-0.034] unit decrease	NR [11722792] (imputed)	N
1157	chr5	75003677	75003678	rs2307111	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	5q13.3		rs2307111-T	0.603405	5E-13		0.0269518	[0.02-0.034] unit decrease	NR [11722792] (imputed)	N
1157	chr5	75003677	75003678	rs2307111	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	5q13.3		rs2307111-T	0.603405	3E-10		0.0239846	[0.017-0.031] unit decrease	NR [11722792] (imputed)	N
1157	chr5	75003677	75003678	rs2307111	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	5q13.3		rs2307111-T	0.603405	3E-13		0.0270939	[0.02-0.034] unit decrease	NR [11722792] (imputed)	N
1157	chr5	75003677	75003678	rs2307111	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	5q13.3		rs2307111-T	0.603405	3E-9		0.0222099	[0.015-0.03] unit decrease	NR [11722792] (imputed)	N
1157	chr5	75003677	75003678	rs2307111	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	5q13.3		rs2307111-C	NR	1E-47		0.0242	[0.021-0.028] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1157	chr5	75003677	75003678	rs2307111	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	5q13.3		rs2307111-C	NR	4E-9		0.0109	[0.0074-0.0144] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
1157	chr5	75003677	75003678	rs2307111	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	5q13.3		rs2307111-C	NR	5E-17		0.0175	[0.013-0.022] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
1157	chr5	75003677	75003678	rs2307111	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	5q13.3		rs2307111-C	NR	1E-44		0.0268	[0.023-0.031] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1157	chr5	75003677	75003678	rs2307111	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	5q13.3	POC5	rs2307111-T	0.604907	1E-9		0.00873578	[0.0059-0.0115] unit increase	Affymetrix [12370749]	N
1157	chr5	75003677	75003678	rs2307111	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		5q13.3	POC5	rs2307111-T	0.604907	7E-33		0.0167553	[0.014-0.02] unit increase	Affymetrix [12370749]	N
1157	chr5	75003677	75003678	rs2307111	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	5q13.3	POC5	rs2307111-T	0.605079	2E-22		0.0190204	[0.015-0.023] unit decrease	Affymetrix [NR] (imputed)	N
1157	chr5	75003677	75003678	rs2307111	32060260	Campos AI	2020-02-14	Nat Commun	Insights into the aetiology of snoring from observational and genetic investigations in the UK Biobank.	Snoring	61,792 British ancestry female cases, 156,554 British ancestry female controls	NA	5q13.3	NR	rs2307111-T	NR	2E-10		0.008969	[0.0062-0.0117] unit increase	NR [11010159] (imputed)	N
1157	chr5	75003677	75003678	rs2307111	32060260	Campos AI	2020-02-14	Nat Commun	Insights into the aetiology of snoring from observational and genetic investigations in the UK Biobank.	Snoring	152,302 British ancestry cases, 256,015 British ancestry controls	NA	5q13.3	NR	rs2307111-T	NR	5E-13		0.00766743	[0.0056-0.0098] unit increase	NR [11010159] (imputed)	N
1157	chr5	75003677	75003678	rs2307111	32060260	Campos AI	2020-02-14	Nat Commun	Insights into the aetiology of snoring from observational and genetic investigations in the UK Biobank.	Snoring	151,836 British ancestry cases, 255,230 British ancestry controls	NA	5q13.3	NR	rs2307111-T	NR	2E-6	(adjusted for BMI)	0.005014	[0.003-0.0071] unit increase	NR [11010159] (imputed)	N
1157	chr5	75003677	75003678	rs2307111	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	5q13.3	NR	rs2307111-C	0.3933	1E-24		0.026013581	[0.021-0.031] unit decrease	Affymetrix [10549349] (imputed)	N
1157	chr5	75003677	75003678	rs2307111	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Body mass index	17,127 African American individuals, 21,955 Hispanic/Latino individuals, 4,647 Asian ancestry individuals, 3,936 Native Hawaiian ancestry individuals, 645 Native American ancestry individuals, 1,025 individuals	NA	5q13.3	NR	rs2307111-?	NR	7E-6		0.03119995	[0.018-0.045] unit decrease	Illumina [32062178] (imputed)	N
1157	chr5	75003677	75003678	rs2307111	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Snoring	359,916 European ancestry individuals	NA	5q13.3	NR	rs2307111-T	0.6054	1E-11		1.0309278	[1.02-1.04]	Affymetrix, Illumina [10862568] (imputed)	N
1157	chr5	75003677	75003678	rs2307111	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	5q13.3		rs2307111-?	NR	1E-46				NR [~ 8900000] (imputed)	N
1157	chr5	75003677	75003678	rs2307111	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	5q13.3	POC5	rs2307111-T	0.5943	2E-9		0.1593	[0.11-0.21] mmHg increase	Affymetrix [NR] (imputed)	N
1157	chr5	75003677	75003678	rs2307111	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Diastolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	5q13.3	POC5	rs2307111-T	0.5369	4E-8		0.1404	[0.09-0.191] mmHg decrease	Affymetrix [NR] (imputed)	N
1157	chr5	75003677	75003678	rs2307111	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	5q13.3	POC5	rs2307111-T	0.6053	2E-16		1.05	[1.04-1.07]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1157	chr5	75003677	75003678	rs2307111	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	5q13.3	POC5	rs2307111-T	0.5474	3E-16		0.023	[0.018-0.028] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1157	chr5	75003677	75003678	rs2307111	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	5q13.3	POC5	rs2307111-C	0.397269770420072	3E-8		0.0407	[0.026-0.055] unit decrease	NR [5035015] (imputed)	N
1157	chr5	75003677	75003678	rs2307111	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes (adjusted for BMI)	up to 48,286 European ancestry cases, up to 250,671 European ancestry controls	NA	5q13.3	POC5	rs2307111-T	0.597	3E-6		1.03	[1.02-1.05]	Affymetrix, Illumina [247470]	N
1157	chr5	75003677	75003678	rs2307111	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes	up to 48,286 European ancestry cases, up to 250,671 European ancestry controls	NA	5q13.3	POC5	rs2307111-T	0.597	5E-12		1.06	[1.04-1.07]	Affymetrix, Illumina [247470]	N
1157	chr5	75003677	75003678	rs2307111	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes	48,286 European ancestry cases, 250,671 European ancestry controls, 33,126 African American, East Asian, Hispanic/Latino or South Asian cases, 120,161 African American, East Asian, Hispanic/Latino or South Asian controls	NA	5q13.3	POC5	rs2307111-T	0.562	2E-15		1.05	[1.04-1.07]	Affymetrix, Illumina [247470]	N
1157	chr5	75003677	75003678	rs2307111	29273807	Turcot V	2017-12-22	Nat Genet	Protein-altering variants associated with body mass index implicate pathways that control energy intake and expenditure in obesity.	Body mass index	up to 449,889 European ancestry individuals, up to 29,398 South Asian ancestry individuals, up to 27,610 African American individuals, up to 8,839 East Asian individuals, up to 10,772 Hispanic ancestry individuals	up to 196,766 European ancestry individuals	5q13.3	POC5, ANKRD31, GCNT4	rs2307111-T	0.5908	9E-32		0.0227	[0.019-0.026] unit increase	Illumina [246328]	N
1157	chr5	75003677	75003678	rs2307111	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry  class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry class I obese individuals, 5,476 European ancestry class II obese individuals, 1,162 European ancestry class III obese individuals, up to 39,294 European ancestry controls	5q13.3	C5orf37	rs2307111-T	0.6	3E-12	(Obesity class I)	1.07	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
1157	chr5	75008147	75008148	rs72768387	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (neutrophil)	21,347 Hispanic or Latin American individuals	NA	5q13.3		rs72768387-A	0.0253	3E-8		0.2014	[0.13-0.27] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1157	chr5	75010001	75010002	rs6864091	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large HDL	115,082 European ancestry individuals	NA	5q13.3		rs6864091-T	0.637469	2E-13		0.028525	[0.021-0.036] unit decrease	NR [11722792] (imputed)	N
1157	chr5	75010001	75010002	rs6864091	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	5q13.3		rs6864091-T	0.637469	1E-15		0.032674	[0.025-0.041] unit decrease	NR [11722792] (imputed)	N
1157	chr5	75010001	75010002	rs6864091	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	5q13.3		rs6864091-T	0.637469	3E-18		0.0335717	[0.026-0.041] unit decrease	NR [11722792] (imputed)	N
1157	chr5	75010001	75010002	rs6864091	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	5q13.3		rs6864091-T	0.637469	4E-19		0.0360909	[0.028-0.044] unit decrease	NR [11722792] (imputed)	N
1157	chr5	75010001	75010002	rs6864091	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	5q13.3		rs6864091-T	0.637469	2E-18		0.033915	[0.026-0.042] unit decrease	NR [11722792] (imputed)	N
1157	chr5	75010001	75010002	rs6864091	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	5q13.3	NR	rs6864091-?	NR	9E-44				Affymetrix [~ 8270000] (imputed)	N
1157	chr5	75010001	75010002	rs6864091	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	5q13.3	POC5	rs6864091-T	0.6338	7E-8		0.038	[0.024-0.052] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1157	chr5	75010001	75010002	rs6864091	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	5q13.3	POC5	rs6864091-T	0.6338	7E-10		0.0436	[0.03-0.058] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1157	chr5	75015241	75015242	rs2112347	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	5q13.3		rs2112347-T	0.638262	1E-13		0.0304151	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
1157	chr5	75015241	75015242	rs2112347	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	5q13.3		rs2112347-T	0.638262	8E-9		0.0236312	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
1157	chr5	75015241	75015242	rs2112347	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	163,835 East Asian ancestry individuals	NA	5q13.3		rs2112347-G	0.561598	1E-13		0.0236545	[0.017-0.03] unit decrease	Illumina [13479178] (imputed)	N
1157	chr5	75015241	75015242	rs2112347	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Sex hormone-binding globulin levels	389,354 European ancestry individuals	NA	5q13.3		rs2112347-T	0.64	6E-11		0.012	nmol/L decrease	NR [NR] (imputed)	N
1157	chr5	75015241	75015242	rs2112347	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	5q13.3		rs2112347-T	0.64	2E-27				NR [NR] (imputed)	N
1157	chr5	75015241	75015242	rs2112347	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	High density lipoprotein cholesterol levels	392,965 European ancestry individuals	NA	5q13.3		rs2112347-T	0.64	2E-22		0.018	mmol/L decrease	NR [NR] (imputed)	N
1157	chr5	75015241	75015242	rs2112347	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	5q13.3		rs2112347-T	0.64	2E-31		0.018	% increase	NR [NR] (imputed)	N
1157	chr5	75015241	75015242	rs2112347	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip and palate	121 Asian ancestry cases, 159 European ancestry cases, 285 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	5q13.3	NR	rs2112347-?	NR	4E-7		1.39	[1.29-1.49]	Illumina [539000] (imputed)	N
1157	chr5	75015241	75015242	rs2112347	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	5q13.3	NA	rs2112347-T	0.63	8E-18		0.015	[0.012-0.018] unit increase	NR [~ 27400000] (imputed)	N
1157	chr5	75015241	75015242	rs2112347	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	5q13.3	NR	rs2112347-T	0.63	8E-18		0.015	[0.012-0.018] unit increase	NR [~ 27400000] (imputed)	N
1157	chr5	75015241	75015242	rs2112347	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	5q13.3	NA	rs2112347-T	0.6298	1E-61		0.0276	[0.024-0.031] unit increase	NR [~ 27400000] (imputed)	N
1157	chr5	75015241	75015242	rs2112347	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	5q13.3	NA	rs2112347-T	0.6298	1E-61		0.0276	[0.024-0.031] unit increase	NR [~ 27400000] (imputed)	N
1157	chr5	75015241	75015242	rs2112347	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	5q13.3	NR	rs2112347-T	NR	3E-26		0.027	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
1157	chr5	75015241	75015242	rs2112347	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	5q13.3	POC5, SV2C	rs2112347-G	0.38	8E-27		0.025	[0.021-0.029] unit decrease	Illumina [6108953] (imputed)	N
1157	chr5	75015241	75015242	rs2112347	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	5q13.3	C5orf37, POC5	rs2112347-T	0.629	2E-8	(EA)	0.024	[0.016-0.032] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1157	chr5	75015241	75015242	rs2112347	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	5q13.3	C5orf37, POC5	rs2112347-?	NR	1E-8	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1157	chr5	75015241	75015242	rs2112347	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	5q13.3	C5orf37, POC5	rs2112347-T	0.629	4E-6	(EA, women)	0.0228	[0.013-0.033] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1157	chr5	75015241	75015242	rs2112347	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	5q13.3	C5orf37, POC5	rs2112347-T	0.629	3E-9	(EA)	0.0229	[0.015-0.031] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1157	chr5	75015241	75015242	rs2112347	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	5q13.3	C5orf37	rs2112347-T	0.6128	7E-7	(women)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1157	chr5	75015241	75015242	rs2112347	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	5q13.3	C5orf37	rs2112347-T	0.6128	6E-8	(men)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1157	chr5	75015241	75015242	rs2112347	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	5q13.3	C5orf37	rs2112347-T	0.6128	2E-12				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1157	chr5	75015241	75015242	rs2112347	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in non-smokers	77,279 European ancestry women, 47,280 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	5q13.3	C5orf37	rs2112347-T	0.6128	6E-12		0.0258	[0.018-0.033] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1157	chr5	75015241	75015242	rs2112347	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in non-smokers	77,279 European ancestry women, 47,280 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	5q13.3	C5orf37	rs2112347-T	0.6128	3E-8	(men)	0.03	[0.019-0.041] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1157	chr5	75015241	75015242	rs2112347	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in non-smokers	77,279 European ancestry women, 47,280 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	5q13.3	C5orf37	rs2112347-T	0.6128	2E-6	(women)	0.0226	[0.013-0.032] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1157	chr5	75015241	75015242	rs2112347	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	5q13.3	C5orf37	rs2112347-T	0.6128	5E-8	(women)	0.0233	[0.015-0.032] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1157	chr5	75015241	75015242	rs2112347	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	5q13.3	C5orf37	rs2112347-T	0.6128	4E-7	(men)	0.0243	[0.015-0.034] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1157	chr5	75015241	75015242	rs2112347	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	5q13.3	C5orf37	rs2112347-T	0.6128	1E-13		0.0242	[0.018-0.031] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1157	chr5	75015241	75015242	rs2112347	26961502	Wood AR	2016-03-10	Diabetologia	Variants in the FTO and CDKAL1 loci have recessive effects on risk of obesity and type 2 diabetes, respectively.	Body mass index	29,925 British ancestry cases, 89,763 British ancestry controls	NA	5q13.3	POC5	rs2112347-T	NR	6E-10	(additive model)	0.026	[0.018-0.034] unit increase	NR [9288881] (imputed)	N
1157	chr5	75015241	75015242	rs2112347	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	5q13.3	NR	rs2112347-T	0.630777110658049	8E-18		0.023775818	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1157	chr5	75015241	75015242	rs2112347	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	5q13.3	POC5	rs2112347-T	0.631	3E-13	(EA, women)	0.03	[0.022-0.038] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1157	chr5	75015241	75015242	rs2112347	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	5q13.3	POC5	rs2112347-T	0.629	6E-17	(EA)	0.026	[0.02-0.032] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1157	chr5	75015241	75015242	rs2112347	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	5q13.3	POC5	rs2112347-T	0.628	5E-7	(EA, men)	0.021	[0.013-0.029] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1157	chr5	75015241	75015242	rs2112347	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	5q13.3	POC5	rs2112347-T	0.621	2E-17		0.025	[0.02-0.031] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1157	chr5	75015241	75015242	rs2112347	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	5q13.3	C5orf37	rs2112347-T	0.6252	3E-13	(EA)	0.0254	[0.019-0.032] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1157	chr5	75015241	75015242	rs2112347	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	5q13.3	C5orf37	rs2112347-T	0.6252	2E-13	(EA, women)	0.0328	[0.024-0.042] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1157	chr5	75015241	75015242	rs2112347	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	5q13.3	C5orf37	rs2112347-T	0.6229	7E-11	(EA,women)	0.0309	[0.022-0.04] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1157	chr5	75015241	75015242	rs2112347	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	5q13.3	C5orf37	rs2112347-T	0.6229	1E-11	(EA)	0.0247	[0.018-0.032] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1157	chr5	75015241	75015242	rs2112347	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry  class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry class I obese individuals, 5,476 European ancestry class II obese individuals, 1,162 European ancestry class III obese individuals, up to 39,294 European ancestry controls	5q13.3	C5orf37	rs2112347-T	0.63	4E-9	(Obesity class II)	1.09	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
1157	chr5	75015241	75015242	rs2112347	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry  class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry class I obese individuals, 5,476 European ancestry class II obese individuals, 1,162 European ancestry class III obese individuals, up to 39,294 European ancestry controls	5q13.3	C5orf37	rs2112347-T	0.63	1E-8	(Overweight)	1.04	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
1157	chr5	75015241	75015242	rs2112347	20935630	Speliotes EK	2010-10-10	Nat Genet	Association analyses of 249,796 individuals reveal 18 new loci associated with body mass index.	Body mass index	Up to 123,865 European ancestry individuals	Up to 125,931 European ancestry individuals	5q13.3	FLJ35779, HMGCR	rs2112347-T	0.63	2E-13		0.1	[0.06-0.14] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2800000] (imputed)	N
1157	chr5	75015697	75015698	rs66787104	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	5q13.3		rs66787104-A	0.273469	3E-12		0.0212183	[0.015-0.027] unit decrease	Illumina [13479924] (imputed)	N
1157	chr5	75017318	75017319	rs114676482	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	5q13.3	NR	rs114676482-A	NR	1E-10		0.0662	[0.046-0.086] unit increase	Affymetrix [9000000] (imputed)	N
1157	chr5	75020022	75020023	rs17564079	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	5q13.3	NR	rs17564079-G	NR	1E-14		0.0345	[0.026-0.043] unit increase	Affymetrix [9000000] (imputed)	N
1157	chr5	75020022	75020023	rs17564079	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	5q13.3	NR	rs17564079-G	NR	4E-15		0.0352	[0.026-0.044] unit increase	Affymetrix [9000000] (imputed)	N
1157	chr5	75020022	75020023	rs17564079	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	5q13.3	NR	rs17564079-G	NR	4E-12		0.0312	[0.022-0.04] unit increase	Affymetrix [9000000] (imputed)	N
1157	chr5	75034386	75034387	rs7715806	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals	5q13.3		rs7715806-C	0.634566	3E-8		0.0547661	[0.036-0.073] decrease	Affymetrix [11014269] (imputed)	N
1157	chr5	75034386	75034387	rs7715806	29615537	Kulminski AM	2018-03-01	Aging (Albany NY)	Strong impact of natural-selection-free heterogeneity in genetics of age-related phenotypes.	Total cholesterol levels	up to 33,431 European ancestry individuals	NA	5q13.3	POC5	rs7715806-G	0.3854	4E-7		0.7488	unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1157	chr5	75034386	75034387	rs7715806	29615537	Kulminski AM	2018-03-01	Aging (Albany NY)	Strong impact of natural-selection-free heterogeneity in genetics of age-related phenotypes.	Body mass index	up to 33,431 European ancestry individuals	NA	5q13.3	POC5	rs7715806-G	0.385	2E-6		0.6861	[NR] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1157	chr5	75034386	75034387	rs7715806	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	5q13.3	C5orf37, POC5	rs7715806-C	0.6097	3E-7	(men)	0.0314	[0.019-0.044] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1157	chr5	75034386	75034387	rs7715806	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	5q13.3	C5orf37, POC5	rs7715806-C	0.6006	2E-8		0.0234	[0.015-0.032] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1157	chr5	75034386	75034387	rs7715806	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	5q13.3	C5orf37, POC5	rs7715806-?	NR	5E-9				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1157	chr5	75034386	75034387	rs7715806	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	5q13.3	C5orf37, POC5	rs7715806-?	NR	2E-6	(men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1157	chr5	75034386	75034387	rs7715806	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	5q13.3	C5orf37, POC5	rs7715806-C	0.6006	6E-6	(men)	0.0244	[0.014-0.035] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1157	chr5	75034386	75034387	rs7715806	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	5q13.3	C5orf37, POC5	rs7715806-C	0.6006	6E-10		0.023	[0.016-0.03] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1157	chr5	75037294	75037295	rs9942416	27790247	He L	2016-11-03	Front Genet	Pleiotropic Meta-Analyses of Longitudinal Studies Discover Novel Genetic Variants Associated with Age-Related Diseases.	Age-related disease endophenotypes	9,618 European ancestry individuals	19,796 European ancestry individuals	5q13.3	NR	rs9942416-?	NR	2E-8				Affymetrix [NR]	N
1157	chr5	75038425	75038426	rs60493905	29381148	Gong J	2017-12-21	Int J Obes (Lond)	Trans-ethnic analysis of metabochip data identifies two new loci associated with BMI.	Body mass index	35,606 African American individuals, 26,048 Hispanic/Latino individuals, 22,466 Asian or Native Hawaiian ancestry individuals, 17,859 European ancestry individuals, 535 Native American individuals	NA	5q13.3	COL4A3BP	rs60493905-A		3E-8		0.0047	[0.0029-0.0065] unit decrease	Illumina [at least 200000]	N
1157	chr5	75038430	75038431	rs10078021	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Diastolic blood pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	5q13.3	POC5	rs10078021-T	0.63	1E-8		0.164	[0.11-0.22] unit decrease	Affymetrix [~ 9800000] (imputed)	N
1157	chr5	75038717	75038718	rs258494	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	5q13.3	POC5, SV2C	rs258494-C		2E-7	(EA)	0.212	unit increase	Affymetrix [at least 2696785] (imputed)	N
1157	chr5	75038717	75038718	rs258494	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	5q13.3	POC5, SV2C	rs258494-C		1E-9		0.225	unit increase	Affymetrix [at least 2696785] (imputed)	N
1157	chr5	75038717	75038718	rs258494	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	5q13.3	POC5, SV2C	rs258494-C		5E-19		0.216	unit increase	Affymetrix [at least 2696785] (imputed)	N
1157	chr5	75046358	75046359	rs72768400	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	5q13.3	NR	rs72768400-T	NR	9E-10		0.0341	[0.023-0.045] unit decrease	Affymetrix [9000000] (imputed)	N
1157	chr5	75046358	75046359	rs72768400	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	5q13.3	NR	rs72768400-T	NR	2E-9		0.0332	[0.022-0.044] unit decrease	Affymetrix [9000000] (imputed)	N
1158	chr5	75116420	75116421	rs10055091	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	5q13.3	NR	rs10055091-?	NR	7E-9				Affymetrix [~ 8270000] (imputed)	N
1158	chr5	75123649	75123650	rs6453167	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid vs negative)	9,913 European ancestry cases, 85,072 European ancestry controls, 2,553 Hispanic or Latin American cases, 13,086 Hispanic or Latin American controls, 506 Black or African American cases, 3,110 Black or African American controls	NA	5q13.3		rs6453167-?	NR	5E-6		0.06849295	[0.039-0.098] unit increase	Illumina [9939936] (imputed)	N
1158	chr5	75123649	75123650	rs6453167	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	5q13.3	NR	rs6453167-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
1158	chr5	75146774	75146775	rs28433586	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	5q13.3	NR	rs28433586-?	NR	5E-11				Affymetrix [~ 8270000] (imputed)	N
1158	chr5	75184913	75184914	rs79069165	29346644	Yan Q	2018-01-15	Hum Mol Genet	Genome-wide Analysis of Disease Progression in Age-related Macular Degeneration.	Disease progression in age-related macular degeneration (adjusted for baseline)	1,105 progressed eyes and 3,912 non-progressed eyes from 2,721 European ancestry individuals	NA	5q13.3	SV2C, POC5	rs79069165-C	0.08	7E-8		1.52		Illumina [8974355] (imputed)	N
1158	chr5	75191449	75191450	rs4704262	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	5q13.3	NR	rs4704262-?	NR	1E-13				Affymetrix [~ 8270000] (imputed)	N
1158	chr5	75199193	75199193	rs34148541	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	5q13.3	RP11-524L6.3	rs34148541-G	0.7262	6E-6		0.033	[0.019-0.047] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1158	chr5	75199193	75199193	rs34148541	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	5q13.3	RP11-524L6.3	rs34148541-G	0.7254	2E-6		0.036	[0.021-0.051] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1158	chr5	75199193	75199193	rs34148541	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	5q13.3	RP11-524L6.3	rs34148541-G	0.7254	2E-6		0.036	[0.021-0.051] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1158	chr5	75199193	75199193	rs34148541	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	5q13.3	RP11-524L6.3	rs34148541-G	0.7261	3E-7		0.0375	[0.023-0.052] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1158	chr5	75205781	75205782	rs114098204	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q13.3	NR	rs114098204-A	0.01045	6E-10	(TNC)	0.07592	NR unit increase	Illumina [1671387] (imputed)	N
1158	chr5	75216635	75216636	rs115354848	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	5q13.3	NR	rs115354848-A	NR	1E-12		0.0558	[0.04-0.071] unit increase	Affymetrix [9000000] (imputed)	N
1158	chr5	75216635	75216636	rs115354848	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	5q13.3	NR	rs115354848-A	NR	6E-12		0.0542	[0.039-0.07] unit increase	Affymetrix [9000000] (imputed)	N
1159	chr5	75240115	75240116	rs17565182	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	5q13.3	NR	rs17565182-C	NR	2E-11		0.0268	[0.019-0.035] unit increase	Affymetrix [9000000] (imputed)	N
1159	chr5	75271631	75271632	rs72771940	33563987	Tyrrell J	2021-02-09	Nat Commun	Genetic predictors of participation in optional components of UK Biobank.	Acceptance of an invitation to participate in a mental health questionnaire	146,074 European ancestry cases, 148,713 European ancestry controls	NA	5q13.3	NR	rs72771940-T	1.0	2E-8		0.74	[0.67, 0.82]	Affymetrix [39302896] (imputed)	N
1159	chr5	75339981	75339982	rs114247285	29325848	Martin J	2017-12-02	Biol Psychiatry	A Genetic Investigation of Sex Bias in the Prevalence of Attention-Deficit/Hyperactivity Disorder.	Attention deficit hyperactivity disorder	4,945 European ancestry female cases, 16,246 European ancestry female controls	NA	5q13.3	SV2C	rs114247285-A	NR	8E-7	(females)	0.339	[0.2-0.47] unit increase	Illumina [7531543] (imputed)	N
1159	chr5	75349501	75349502	rs117041666	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	5q13.3	NR	rs117041666-?	NR	2E-6	(EA)	1.1009	[0.65-1.55] unit decrease	Illumina [up to 11892802] (imputed)	N
1160	chr5	75439199	75439200	rs6453204	25117820	Schneider BP	2014-08-12	Br J Cancer	Genetic variant predicts bevacizumab-induced hypertension in ECOG-5103 and ECOG-2100.	Response to chemotherapy in breast cancer hypertensive cases (cumulative dose) (bevacizumab)	255 European ancestry cases, 387 European ancestry controls		5q13.3	SV2C	rs6453204-?	NR	5E-8		2.2	[NR]	Illumina [up to 810372] (imputed)	N
1160	chr5	75439199	75439200	rs6453204	25117820	Schneider BP	2014-08-12	Br J Cancer	Genetic variant predicts bevacizumab-induced hypertension in ECOG-5103 and ECOG-2100.	Response to chemotherapy in breast cancer (hypertension) (bevacizumab)	255 European ancestry cases, 387 European ancestry controls		5q13.3	SV2C	rs6453204-?	NR	6E-8		3.3	[NR]	Illumina [up to 810372] (imputed)	N
1160	chr5	75494995	75494996	rs7448529	34476894	Schmitz J	2021-09-03	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study and polygenic risk score analysis for hearing measures in children.	Hearing function	5,344 European ancestry children	NA	5q13.3		rs7448529-A	0.45	9E-6		0.09	[0.051-0.129] unit decrease	Illumina [5305352] (imputed)	N
1161	chr5	75502409	75502410	rs4704296	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine - clinic-based	5,175 European ancestry clinic-based cases, 13,972 European ancestry clinic-based controls	NA	5q13.3	intergenic	rs4704296-?	0.53	6E-6		1.11	[1.06-1.18]	Affymetrix, Illumina [~ 2300000] (imputed)	N
1161	chr5	75514412	75514413	rs9293681	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Bacteroides stercoris abundance in stool	5,959 Finnish ancestry individuals	NA	5q13.3		rs9293681-C	0.252334	3E-8		0.126687	[0.082-0.172] unit decrease	Illumina [7980478] (imputed)	N
1161	chr5	75519011	75519012	rs12515016	30942860	Shin J	2019-04-03	J Clin Endocrinol Metab	Novel genetic locus of visceral fat and systemic inflammation.	Visceral fat	1589 French-Canadian ancestry individuals	NA	5q13.3	SV2C	rs12515016-A	NR	8E-6	(adjusted for subcutaneous fat)	0.228	[0.13-0.33] unit decrease	Illumina [8511049] (imputed)	N
1161	chr5	75541987	75541988	rs772294806	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	5q13.3	SV2C	rs772294806-T	4.38999999999967E-4	1E-14		0.43341383	[0.32-0.54] unit increase	Affymetrix [93095623] (imputed)	N
1161	chr5	75563534	75563535	rs547353809	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	5q13.3	SV2C	rs547353809-A	0.00197599999999998	5E-9		0.16253386	[0.11-0.22] unit increase	Affymetrix [93095623] (imputed)	N
1161	chr5	75563534	75563535	rs547353809	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	5q13.3	SV2C	rs547353809-A	0.00193399999999999	3E-23		0.2798256	[0.22-0.34] unit increase	Affymetrix [93095623] (imputed)	N
1161	chr5	75563534	75563535	rs547353809	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	5q13.3	SV2C	rs547353809-A	0.00197599999999998	2E-9		0.16644637	[0.11-0.22] unit increase	Affymetrix [93095623] (imputed)	N
1161	chr5	75563534	75563535	rs547353809	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	5q13.3	SV2C	rs547353809-A	0.00197700000000001	1E-11		0.18643406	[0.13-0.24] unit increase	Affymetrix [93095623] (imputed)	N
1161	chr5	75576728	75576729	rs4496693	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	5q13.3	SV2C	rs4496693-C	0.094631	4E-9		0.0235115	[0.017-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
1161	chr5	75576728	75576729	rs4496693	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	5q13.3	NR	rs4496693-C	0.098234	1E-13		0.022979	[0.017-0.029] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1161	chr5	75579517	75579518	rs6453213	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	5q13.3		rs6453213-A	0.922	4E-8				Affymetrix [10369434] (imputed)	N
1161	chr5	75579517	75579518	rs6453213	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	5q13.3	SV2C	rs6453213-G	0.078518	8E-15		0.032566305	[0.024-0.041] unit increase	Affymetrix [93095623] (imputed)	N
1161	chr5	75579761	75579762	rs7730153	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	5q13.3		rs7730153-G	0.922	2E-8				Affymetrix [10369434] (imputed)	N
1161	chr5	75580415	75580416	rs13174383	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	5q13.3		rs13174383-G	NR	4E-11		0.022	[0.016-0.028] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
1161	chr5	75580415	75580416	rs13174383	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	5q13.3	SV2C	rs13174383-G	0.094442	9E-11		0.024528742	[0.017-0.032] unit increase	Affymetrix [93095623] (imputed)	N
1161	chr5	75580415	75580416	rs13174383	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q13.3	NR	rs13174383-T	0.898777	3E-14				Affymetrix, Illumina [22063850] (imputed)	N
1161	chr5	75580415	75580416	rs13174383	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	5q13.3	NR	rs13174383-T	0.902285	1E-15		0.025553	[0.019-0.032] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
1161	chr5	75580415	75580416	rs13174383	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q13.3	NR	rs13174383-G	0.1025	3E-14				Affymetrix, Illumina [24246363] (imputed)	N
1161	chr5	75591709	75591710	rs2270927	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	5q13.3	SV2C	rs2270927-G	0.0956	3E-11		0.03997605	[0.028-0.052] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1161	chr5	75594359	75594360	rs31243	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q13.3	NR	rs31243-G	0.118517	2E-10				Affymetrix, Illumina [23467995] (imputed)	N
1161	chr5	75594359	75594360	rs31243	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	5q13.3	NR	rs31243-G	0.09625	1E-12		0.022555	[0.016-0.029] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1161	chr5	75594359	75594360	rs31243	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	5q13.3		rs31243-?	NR	1E-13				NR [~ 8900000] (imputed)	N
1161	chr5	75594456	75594457	rs34664047	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	5q13.3	RP11-466P24.6, SV2C	rs34664047-T	0.349635	7E-10		0.014610891	[0.01-0.0193] unit increase	Affymetrix [93095623] (imputed)	N
1161	chr5	75599207	75599208	rs246814	32310270	Foo JN	2020-04-20	JAMA Neurol	Identification of Risk Loci for Parkinson Disease in Asians and Comparison of Risk Between Asians and Europeans: A Genome-Wide Association Study.	Parkinson's disease	6,724 East Asian ancestry cases, 24,851 East Asian ancestry controls	57,545 European ancestry cases, 1,868,816 European ancestry controls, 988 Japanese ancestry cases, 2,521 Japanese ancestry controls	5q13.3	SV2C	rs246814-C	NR	6E-10		1.11	[1.07-1.13]	Illumina [5843213] (imputed)	N
1161	chr5	75622813	75622814	rs3733860	23650146	Tang W	2013-05-05	Genet Epidemiol	A genome-wide association study for venous thromboembolism: the extended cohorts for heart and aging research in genomic epidemiology (CHARGE) consortium.	Venous thromboembolism	1,618 European ancestry cases, 42,881 European ancestry controls	3,231 European ancestry cases, 3,536 European ancestry controls	5q13.3	SV2C	rs3733860-A	0.87	8E-6		1.19	[1.10-1.29]	Affymetrix, Illumina [2543885] (imputed)	N
1161	chr5	75628105	75628106	rs73764328	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (hospitalized covid vs population)	613 European ancestry cases, 680,416 European ancestry controls, 140 Hispanic or Latin American cases, 94,327 Hispanic or Latin American controls, 49 Black or African American cases, 22,410 Black or African American controls	NA	5q13.3		rs73764328-?	NR	6E-6		0.504507	[0.29-0.72] unit decrease	Illumina [9875426] (imputed)	N
1161	chr5	75628105	75628106	rs73764328	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid respiratory support vs population)	495 European ancestry cases, 680,440 European ancestry controls, 102 Hispanic or Latin American cases, 94,330 Hispanic or Latin American controls, 39 Black or African American cases, 22,410 Black or African American controls	NA	5q13.3		rs73764328-?	NR	5E-7		0.6064633	[0.37-0.84] unit decrease	Illumina [9842460] (imputed)	N
1162	chr5	75633514	75633515	rs2937738	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	5q13.3	NR	rs2937738-A	NR	8E-10		0.0271	[0.018-0.036] unit increase	Affymetrix [9000000] (imputed)	N
1162	chr5	75633514	75633515	rs2937738	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	5q13.3	NR	rs2937738-A	NR	3E-9		0.0262	[0.018-0.035] unit increase	Affymetrix [9000000] (imputed)	N
1162	chr5	75649279	75649280	rs73117804	27846281	Galesloot TE	2016-11-15	PLoS One	Meta-GWAS and Meta-Analysis of Exome Array Studies Do Not Reveal Genetic Determinants of Serum Hepcidin.	Hepcidin/ferritin ratio	1495 European ancestry individuals without iron deficiency or clinical inflammation, 324 European ancestry individuals, 1206 Val Borbera (founder/genetic isolated) individuals without iron deficiency or clinical inflammation, 274 Val Borbera (founder/genetic isolated) individuals, 2,695 European ancestry individuals without iron deficiency or clinical inflammation, 207 individuals	NA	5q13.3	SV2C	rs73117804-T	0.0167	8E-6		0.7531	[0.42-1.08] unit decrease	Illumina [up to 38043574] (imputed)	N
1162	chr5	75649279	75649280	rs73117804	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	5q13.3	NR	rs73117804-?	NR	9E-6				Affymetrix [5486770] (imputed)	N
1162	chr5	75692002	75692003	rs11740038	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	5q13.3		rs11740038-C	NR	6E-9		0.0123	[0.0082-0.0164] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
1162	chr5	75696661	75696662	rs6874833	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	5q13.3	IQGAP2	rs6874833-C	0.370987	9E-9		0.0113475	[0.0075-0.0152] unit decrease	Affymetrix [NR] (imputed)	N
1162	chr5	75698760	75698761	rs13357820	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	5q13.3	IQGAP2	rs13357820-T	0.502346	1E-34		0.027757572	[0.023-0.032] unit increase	Affymetrix [93095623] (imputed)	N
1162	chr5	75705130	75705131	rs9293684	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	5q13.3		rs9293684-G	NR	3E-13		0.017	[0.012-0.022] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
1162	chr5	75705130	75705131	rs9293684	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	5q13.3	IQGAP2	rs9293684-A	0.341236	4E-14		0.00396772	[0.0029-0.005] unit increase	Affymetrix [13995440] (imputed)	N
1162	chr5	75709412	75709413	rs10065322	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	5q13.3	IQGAP2	rs10065322-A	0.501809	1E-11		0.015116846	[0.011-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
1162	chr5	75720005	75720006	rs10043040	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	5q13.3	NR	rs10043040-C	0.491989	2E-10		0.012062	[0.0084-0.0158] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1162	chr5	75720543	75720544	rs10072221	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	5q13.3	IQGAP2	rs10072221-C	0.4911	1E-16		0.02992938	[0.023-0.037] unit increase	Affymetrix [~ 2500000] (imputed)	N
1162	chr5	75722732	75722732	rs763102039	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	5q13.3	IQGAP2	rs763102039-GGTGTGTGTGTGT	0.482	2E-13		0.0270446	[0.02-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
1162	chr5	75733777	75733778	rs35450692	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	5q13.3	IQGAP2	rs35450692-A	0.391986	2E-22		0.022696765	[0.018-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1162	chr5	75746559	75746560	rs35893266	34162658	Quinn MC	2021-06-23	Cancer Epidemiol Biomarkers Prev	Identification of a locus near ULK1 associated with progression-free survival in ovarian cancer.	Progression free survival in serous epithelial ovarian cancer treated with carboplatin and paclitaxel	1,751 European ancestry individuals	NA	5q13.3	NR	rs35893266-T		6E-7		0.284	[0.17-0.4] unit increase	Illumina [12759548] (imputed)	N
1162	chr5	75746559	75746560	rs35893266	34162658	Quinn MC	2021-06-23	Cancer Epidemiol Biomarkers Prev	Identification of a locus near ULK1 associated with progression-free survival in ovarian cancer.	Progression free survival in epithelial ovarian cancer treated with carboplatin and paclitaxel	2,352 European ancestry individuals	NA	5q13.3	NR	rs35893266-T		2E-6		0.2425	[0.14-0.34] unit increase	Illumina [12764477] (imputed)	N
1162	chr5	75755425	75755426	rs150202118	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (negative Marder score)	1,390 European ancestry cases	NA	5q13.3		rs150202118-G	NR	1E-6	(GLM)	7.3719	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
1163	chr5	75841079	75841080	rs140216208	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	5q13.3	IQGAP2	rs140216208-T	0.017536	5E-14		0.067789935	[0.05-0.085] unit increase	Affymetrix [93095623] (imputed)	N
1163	chr5	75863159	75863160	rs61233297	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		5q13.3	IQGAP2	rs61233297-A	0.094	8E-6	(liability model)	0.11	[0.051-0.169] unit decrease	NR [19725427] (imputed)	N
1163	chr5	75863618	75863619	rs4704336	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	5q13.3	IQGAP2	rs4704336-G	0.463277	7E-10		0.013870162	[0.0095-0.0183] unit decrease	Affymetrix [93095623] (imputed)	N
1163	chr5	75866422	75866423	rs192694811	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Platelet count	444,866 European ancestry individuals	NA	5q13.3		rs192694811-?	NR	4E-18		0.30351	[0.23-0.38] unit decrease	NR [9800000] (imputed)	N
1163	chr5	75866422	75866423	rs192694811	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean platelet volume	445,364 European ancestry individuals	NA	5q13.3		rs192694811-?	NR	1E-126		0.776813	[0.71-0.85] unit increase	NR [9800000] (imputed)	N
1163	chr5	75866422	75866423	rs192694811	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	High light scatter reticulocyte count	437,723 European ancestry individuals	NA	5q13.3		rs192694811-?	NR	8E-11		0.26138	[0.18-0.34] unit increase	NR [9800000] (imputed)	N
1163	chr5	75867876	75867877	rs77373975	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q13.3	NR	rs77373975-T	0.954976	1E-339				Affymetrix, Illumina [17210439] (imputed)	N
1164	chr5	75897896	75897897	rs10077289	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	5q13.3	NR	rs10077289-?	NR	9E-7		0.0085837	[0.0052-0.012] unit increase	Affymetrix [805426] (imputed)	N
1164	chr5	75898195	75898196	rs17652394	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	5q13.3	IQGAP2	rs17652394-T	0.260271	3E-16		0.021002777	[0.016-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1164	chr5	75906850	75906851	rs7722711	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	5q13.3	IQGAP2	rs7722711-C	0.0643	3E-38		0.05980219	[0.051-0.069] unit decrease	Affymetrix [93095623] (imputed)	N
1164	chr5	75906850	75906851	rs7722711	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	5q13.3	IQGAP2	rs7722711-C	0.0642	2E-18		0.06466721	[0.05-0.079] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1164	chr5	75907064	75907065	rs3797390	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Sutterella)	1,068 Japanese ancestry individuals	NA	5q13.3	IQGAP2	rs3797390-G	0.50	1E-6		0.0247	[0.015-0.035] unit decrease	Illumina [6380737] (imputed)	N
1164	chr5	75907064	75907065	rs3797390	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	5q13.3	IQGAP2	rs3797390-G	0.231216	3E-10		0.017963488	[0.012-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1164	chr5	75916433	75916434	rs2069664	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex interaction	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	5q13.3	IQGAP2	rs2069664-G	0.53	6E-6				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1164	chr5	75916614	75916615	rs2069661	31455332	Zhang Y	2019-08-28	BMC Med	Dissecting genetic factors affecting phenylephrine infusion rates during anesthesia: a genome-wide association study employing EHR data.	Phenylephrine infusion rate during anesthesia	1,534 European ancestry individuals	NA	5q13.3	IQGAP2, F2RL2, LOC101929109, NCRUPAR	rs2069661-A	0.01725	2E-7		13.85	[8.65-19.04] unit increase	Illumina [up to 4929806] (imputed)	N
1164	chr5	75920961	75920962	rs114149445	28203683	Heit JA	2017-02-16	Thromb Haemost	Identification of unique venous thromboembolism-susceptibility variants in African-Americans.	Venous thromboembolism adjusted for sickle cell variant rs77121243-T	393 African American cases, 4,941 African American controls.	NR	5q13.3	IQGAP2	rs114149445-T	0.0196	9E-7		3.196	[2.009-5.084]	Affymetrix, Illumina [14074516] (imputed)	N
1164	chr5	75920971	75920972	rs457717	20068591	Van Laer L	2010-01-13	Eur J Hum Genet	A genome-wide association study for age-related hearing impairment in the Saami.	Hearing impairment	347 Finnish Saami individuals	NA	5q13.3	IQGAP2	rs457717-T	0.25	4E-7	(PC3)			Affymetrix [83381]	N
1164	chr5	75932943	75932944	rs922375218	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Platelet count	444,866 European ancestry individuals	NA	5q13.3		rs922375218-?	NR	1E-8		0.49078	[0.32-0.67] unit decrease	NR [9800000] (imputed)	N
1164	chr5	75932943	75932944	rs922375218	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean platelet volume	445,364 European ancestry individuals	NA	5q13.3		rs922375218-?	NR	5E-22		0.745734	[0.58-0.91] unit increase	NR [9800000] (imputed)	N
1164	chr5	75935630	75935631	rs114685606	28031487	Guo MH	2016-12-28	Proc Natl Acad Sci U S A	Comprehensive population-based genome sequencing provides insight into hematopoietic regulatory mechanisms.	Mean platelet volume	6,228 European ancestry individuals	NA	5q13.3	F2RL2	rs114685606-?	0.023	3E-8		0.011	[NR] fL increase	NR [16536512] (imputed)	N
1164	chr5	75943398	75943399	rs55728704	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (Multivariate)	1,390 European ancestry individuals	NA	5q13.3		rs55728704-?	NR	8E-6	(MLM)			Illumina [~ 9000000] (imputed)	N
1164	chr5	75953091	75953092	rs664494	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Proteinase-activated receptor 1 levels	21,758 European ancestry individuals	9,173 individuals	5q13.3		rs664494-T	0.61	1E-32		0.1117	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1164	chr5	75954028	75954029	rs17681722	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,963 Sub-Saharan African ancestry females, 3,931 Sub-Saharan African ancestry males	NA	5q13.3		rs17681722-G	0.927202	8E-6		0.0118498	[0.0022-0.0215] unit increase	Illumina [7666802] (imputed)	N
1164	chr5	75954281	75954282	rs1187950275	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean platelet volume	445,364 European ancestry individuals	NA	5q13.3		rs1187950275-?	NR	2E-10		0.636623	[0.43-0.84] unit increase	NR [9800000] (imputed)	N
1164	chr5	75960967	75960968	rs34968964	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Reticulocyte count	437,291 European ancestry individuals	NA	5q13.3		rs34968964-?	NR	1E-12		0.0930317	[0.067-0.119] unit increase	NR [9800000] (imputed)	N
1164	chr5	75960967	75960968	rs34968964	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Platelet distribution width	445,262 European ancestry individuals	NA	5q13.3		rs34968964-?	NR	1E-11		0.0890049	[0.064-0.114] unit increase	NR [9800000] (imputed)	N
1164	chr5	75960967	75960968	rs34968964	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Platelet count	444,866 European ancestry individuals	NA	5q13.3		rs34968964-?	NR	4E-53		0.191984	[0.17-0.22] unit decrease	NR [9800000] (imputed)	N
1164	chr5	75960967	75960968	rs34968964	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean platelet volume	445,364 European ancestry individuals	NA	5q13.3		rs34968964-?	NR	3E-193		0.33657	[0.31-0.36] unit increase	NR [9800000] (imputed)	N
1164	chr5	75960967	75960968	rs34968964	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	High light scatter reticulocyte count	437,723 European ancestry individuals	NA	5q13.3		rs34968964-?	NR	8E-14		0.0962014	[0.07-0.122] unit increase	NR [9800000] (imputed)	N
1164	chr5	75960967	75960968	rs34968964	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	5q13.3	IQGAP2	rs34968964-C	0.00593999999999995	3E-15		0.11463013	[0.086-0.143] unit increase	Affymetrix [93095623] (imputed)	N
1164	chr5	75960967	75960968	rs34968964	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	5q13.3	IQGAP2	rs34968964-C	0.00594099999999997	1E-15		0.11611395	[0.088-0.145] unit increase	Affymetrix [93095623] (imputed)	N
1164	chr5	75960967	75960968	rs34968964	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	5q13.3	IQGAP2	rs34968964-C	0.00571200000000005	6E-29		0.16666284	[0.14-0.2] unit decrease	Affymetrix [93095623] (imputed)	N
1164	chr5	75960967	75960968	rs34968964	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	5q13.3	IQGAP2	rs34968964-C	0.00570999999999999	9E-130		0.36221036	[0.33-0.39] unit increase	Affymetrix [93095623] (imputed)	N
1164	chr5	75960967	75960968	rs34968964	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	5q13.3	IQGAP2	rs34968964-C	0.00593500000000002	2E-16		0.11887138	[0.091-0.147] unit increase	Affymetrix [93095623] (imputed)	N
1164	chr5	75960967	75960968	rs34968964	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	5q13.3	IQGAP2	rs34968964-C	0.005934	1E-16		0.119521394	[0.091-0.148] unit increase	Affymetrix [93095623] (imputed)	N
1164	chr5	75960967	75960968	rs34968964	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	5q13.3	IQGAP2	rs34968964-C	0.0051	1E-34		0.3249945	[0.27-0.38] unit increase	Affymetrix [~ 2500000] (imputed)	N
1164	chr5	75964506	75964507	rs34950321	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	5q13.3		rs34950321-C	0.982	2E-12				Affymetrix [10369434] (imputed)	N
1164	chr5	75964506	75964507	rs34950321	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	5q13.3	IQGAP2	rs34950321-T	0.0182560000000001	4E-17		0.0701692	[0.054-0.087] unit increase	Affymetrix [93095623] (imputed)	N
1164	chr5	75964506	75964507	rs34950321	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	5q13.3	IQGAP2	rs34950321-T	0.0182560000000001	7E-22		0.080200136	[0.064-0.097] unit increase	Affymetrix [93095623] (imputed)	N
1164	chr5	75964506	75964507	rs34950321	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	5q13.3	IQGAP2	rs34950321-T	0.018275	9E-10		0.050466944	[0.034-0.067] unit increase	Affymetrix [93095623] (imputed)	N
1164	chr5	75964506	75964507	rs34950321	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	5q13.3	IQGAP2	rs34950321-T	0.017938	2E-28		0.093818724	[0.077-0.11] unit decrease	Affymetrix [93095623] (imputed)	N
1164	chr5	75964506	75964507	rs34950321	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	5q13.3	IQGAP2	rs34950321-T	0.017945	9E-122		0.19827014	[0.18-0.21] unit increase	Affymetrix [93095623] (imputed)	N
1164	chr5	75964506	75964507	rs34950321	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	5q13.3	IQGAP2	rs34950321-T	0.018252	6E-17		0.06930579	[0.053-0.086] unit increase	Affymetrix [93095623] (imputed)	N
1164	chr5	75964506	75964507	rs34950321	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	5q13.3	IQGAP2	rs34950321-T	0.018251	6E-21		0.07781964	[0.062-0.094] unit increase	Affymetrix [93095623] (imputed)	N
1164	chr5	75964506	75964507	rs34950321	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	5q13.3	IQGAP2	rs34950321-T	0.0183	4E-9		0.07866081	[0.052-0.105] unit increase	Affymetrix [~ 2500000] (imputed)	N
1164	chr5	75964506	75964507	rs34950321	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	5q13.3	IQGAP2	rs34950321-T	0.018	2E-10		0.08763583	[0.061-0.115] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1164	chr5	75964506	75964507	rs34950321	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	5q13.3	IQGAP2	rs34950321-T	0.0179	5E-54		0.2105824	[0.18-0.24] unit increase	Affymetrix [~ 2500000] (imputed)	N
1164	chr5	75972880	75972881	rs2303161	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	5q13.3		rs2303161-A	0.07366	2E-8		0.0380423	[0.025-0.051] unit decrease	Illumina [13478928] (imputed)	N
1164	chr5	75973080	75973081	rs142296855	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean platelet volume	445,364 European ancestry individuals	NA	5q13.3		rs142296855-?	NR	2E-11		0.27102	[0.19-0.36] unit increase	NR [9800000] (imputed)	N
1164	chr5	75979026	75979027	rs185223948	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean platelet volume	445,364 European ancestry individuals	NA	5q13.3		rs185223948-?	NR	6E-12		0.37246	[0.27-0.48] unit increase	NR [9800000] (imputed)	N
1164	chr5	75996908	75996909	rs34592828	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	5q13.3		rs34592828-A	0.04	1E-10		6.43	z score increase	Affymetrix [9061022] (imputed)	N
1164	chr5	75996908	75996909	rs34592828	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	5q13.3		rs34592828-A	NR	5E-20		0.0552	[0.043-0.067] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
1164	chr5	75996908	75996909	rs34592828	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	5q13.3		rs34592828-A	NR	3E-160		0.1491	[0.14-0.16] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1164	chr5	75996908	75996909	rs34592828	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	5q13.3	NR	rs34592828-A	0.0457	6E-12				NR [9056863] (imputed)	N
1164	chr5	75996908	75996909	rs34592828	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	5q13.3		rs34592828-G	0.955	2E-29				Affymetrix [10369434] (imputed)	N
1164	chr5	75996908	75996909	rs34592828	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	5q13.3		rs34592828-G	0.955	2E-87				Affymetrix [10369434] (imputed)	N
1164	chr5	75996908	75996909	rs34592828	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	5q13.3	IQGAP2, CTD-2384B11.2	rs34592828-A	NR	4E-9		0.0436244	[0.029-0.058] unit increase	Affymetrix [323858] (imputed)	N
1164	chr5	75996908	75996909	rs34592828	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	5q13.3	IQGAP2	rs34592828-A	0.04478	2E-41		0.07267985	[0.062-0.083] unit increase	Affymetrix [93095623] (imputed)	N
1164	chr5	75996908	75996909	rs34592828	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	5q13.3	IQGAP2	rs34592828-A	0.044782	7E-49		0.07932689	[0.069-0.09] unit increase	Affymetrix [93095623] (imputed)	N
1164	chr5	75996908	75996909	rs34592828	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	5q13.3	IQGAP2	rs34592828-A	0.044875	3E-12		0.037242666	[0.027-0.048] unit increase	Affymetrix [93095623] (imputed)	N
1164	chr5	75996908	75996909	rs34592828	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	5q13.3	IQGAP2	rs34592828-A	0.04371	2E-9		0.0329574	[0.022-0.044] unit increase	Affymetrix [93095623] (imputed)	N
1164	chr5	75996908	75996909	rs34592828	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	5q13.3	IQGAP2	rs34592828-A	0.043693	4E-143		0.14019622	[0.13-0.15] unit decrease	Affymetrix [93095623] (imputed)	N
1164	chr5	75996908	75996909	rs34592828	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	5q13.3	IQGAP2	rs34592828-A	0.0447650000000001	3E-15		0.04292597	[0.032-0.054] unit decrease	Affymetrix [93095623] (imputed)	N
1164	chr5	75996908	75996909	rs34592828	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	5q13.3	IQGAP2	rs34592828-A	0.043702	4E-507		0.2759414	[0.26-0.29] unit increase	Affymetrix [93095623] (imputed)	N
1164	chr5	75996908	75996909	rs34592828	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	5q13.3	IQGAP2	rs34592828-A	0.044859	7E-11		0.034765407	[0.024-0.045] unit decrease	Affymetrix [93095623] (imputed)	N
1164	chr5	75996908	75996909	rs34592828	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	5q13.3	IQGAP2	rs34592828-A	0.044814	1E-38		0.069829404	[0.059-0.08] unit increase	Affymetrix [93095623] (imputed)	N
1164	chr5	75996908	75996909	rs34592828	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	5q13.3	IQGAP2	rs34592828-A	0.044817	2E-45		0.076038346	[0.066-0.087] unit increase	Affymetrix [93095623] (imputed)	N
1164	chr5	75996908	75996909	rs34592828	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q13.3	NR	rs34592828-A	0.0412556	6E-183				Affymetrix, Illumina [24588908] (imputed)	N
1164	chr5	75996908	75996909	rs34592828	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	5q13.3	NR	rs34592828-A	0.042954	1E-186		0.131568	[0.12-0.14] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1164	chr5	75996908	75996909	rs34592828	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	5q13.3	NR	rs34592828-A	0.04434	8E-12		0.03197	[0.023-0.041] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
1164	chr5	75996908	75996909	rs34592828	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Forns index in high alcohol intake	33,437 British ancestry individuals	NA	5q13.3		rs34592828-?	0.0455	2E-7		0.005995	unit increase	NR [6200000] (imputed)	N
1164	chr5	75996908	75996909	rs34592828	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Fibrosis-4 index in high alcohol intake	33,324 British ancestry individuals	NA	5q13.3		rs34592828-?	0.0455	2E-8		0.01541	unit increase	NR [6200000] (imputed)	N
1164	chr5	75996908	75996909	rs34592828	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Aspartate aminotransferase platelet ratio index in high alcohol intake	33,330 British ancestry individuals	NA	5q13.3		rs34592828-?	0.0455	5E-6		0.01536	unit increase	NR [6200000] (imputed)	N
1164	chr5	75996908	75996909	rs34592828	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	5q13.3		rs34592828-?	NR	5E-15				NR [~ 8900000] (imputed)	N
1164	chr5	76003043	76003044	rs202207724	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean platelet volume	445,364 European ancestry individuals	NA	5q13.3		rs202207724-?	NR	2E-10		0.663135	[0.47-0.86] unit increase	NR [9800000] (imputed)	N
1164	chr5	76003257	76003258	rs464494	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	5q13.3		rs464494-C	0.581	9E-11				Affymetrix [10369434] (imputed)	N
1164	chr5	76019043	76019044	rs2227827	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	5q13.3		rs2227827-T	NR	6E-19		0.0512	[0.04-0.063] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
1164	chr5	76019043	76019044	rs2227827	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	5q13.3	F2R	rs2227827-T	0.0461	8E-23		0.08419079	[0.067-0.101] unit increase	Affymetrix [~ 2500000] (imputed)	N
1165	chr5	76023493	76023494	rs2227831	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	5q13.3		rs2227831-G	0.05	1E-17		8.53	z score increase	Affymetrix [9061022] (imputed)	N
1165	chr5	76023493	76023494	rs2227831	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	5q13.3		rs2227831-G	NR	3E-10		0.0355	[0.025-0.046] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
1165	chr5	76023493	76023494	rs2227831	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 144)	19,670 European ancestry individuals	NA	5q13.3		rs2227831-?	NR	3E-8				NR [9705931] (imputed)	N
1165	chr5	76023493	76023494	rs2227831	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	5q13.3		rs2227831-?	NR	1E-16				NR [~ 8900000] (imputed)	N
1165	chr5	76023493	76023494	rs2227831	22139419	Gieger C	2011-11-30	Nature	New gene functions in megakaryopoiesis and platelet formation.	Mean platelet volume	13,106 European ancestry individuals, 1,652 Val Borbera (founder/genetic isolate) individuals, 593 Carlantino (founder/genetic isolate) individuals, 1,146 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,213 South Tyrolean (founder/genetic isolate) individuals, 890 Sorbian (founder/genetic isolate) individuals	Up to 16,960 European ancestry individuals, 855 Cliento (founder/genetic isolate) individuals, 1,023 Talana (founder/genetic isolate) individuals	5q13.3	F2R	rs2227831-G	NR	1E-15		0.021	[0.015-0.027] ln(fl) increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1165	chr5	76039429	76039430	rs457606	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	5q13.3		rs457606-T	0.544	1E-9				Affymetrix [10369434] (imputed)	N
1165	chr5	76044381	76044382	rs188526878	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	5q13.3	Intergenic	rs188526878-T	1.0	2E-6	(AA)	0.69	unit increase	Illumina [NR] (imputed)	N
1165	chr5	76046938	76046939	rs17568628	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	5q13.3	NR	rs17568628-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
1165	chr5	76046938	76046939	rs17568628	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	5q13.3	NR	rs17568628-?	NR	3E-11				Affymetrix [~ 8270000] (imputed)	N
1165	chr5	76046938	76046939	rs17568628	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	5q13.3		rs17568628-?	NR	7E-10				NR [~ 8900000] (imputed)	N
1165	chr5	76046938	76046939	rs17568628	22139419	Gieger C	2011-11-30	Nature	New gene functions in megakaryopoiesis and platelet formation.	Platelet count	38,891 European ancestry individuals, 1,661 Val Borbera (founder/genetic isolate) individuals, 521 Carlantino (founder/genetic isolate) individuals, 1,198 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,213 South Tyrolean (founder/genetic isolate) individuals, 890 Sorbian (founder/genetic isolate) individuals, 4,292 Sardinian (founder/genetic isolate) individuals	Up to 16,949 European ancestry individuals, 854 Cliento (founder/genetic isolate) individuals, 1,035 Talana (founder/genetic isolate) individuals	5q13.3	F2R	rs17568628-T	NR	1E-9		6.074	[4.13-8.02] 10^9/l increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1165	chr5	76058508	76058509	rs2047076	25096241	Keller MF	2014-08-05	Hum Mol Genet	Trans-ethnic meta-analysis of white blood cell phenotypes.	Monocyte count	9,810 Japanese ancestry individuals, 16,550 European ancestry individuals, 7,369 African American individuals	NA	5q13.3	intergenic	rs2047076-C	0.9998	2E-8	(Japanese)	2.678	[1.75-3.61] unit increase	Illumina [NR] (imputed)	N
1165	chr5	76059300	76059301	rs250727	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Proteinase-activated receptor 1 levels	21,758 European ancestry individuals	9,173 individuals	5q13.3		rs250727-T	0.55	2E-39		0.1163	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1165	chr5	76069007	76069008	rs144215134	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	5q13.3	NR	rs144215134-C	0.046923	6E-575		0.241842	[0.23-0.25] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1165	chr5	76069007	76069008	rs144215134	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	5q13.3	intergenic	rs144215134-C	0.0482	1E-14		0.0650681	[0.049-0.082] unit increase	Affymetrix [~ 2500000] (imputed)	N
1165	chr5	76089008	76089009	rs190204665	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	5q13.3	Intergenic	rs190204665-T	NR	1E-7	(between families)	5.259	unit increase	Affymetrix [up to 15107142] (imputed)	N
1165	chr5	76107987	76107988	rs13178844	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	5q13.3		rs13178844-T	NR	3E-12		0.0173	[0.012-0.022] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
1165	chr5	76110216	76110217	rs6897362	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	5q13.3	NR	rs6897362-A	0.5261	2E-8		0.001326	[0.00088-0.00177] unit decrease	Affymetrix [NR] (imputed)	N
1165	chr5	76117835	76117836	rs72761094	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	5q13.3	NR	rs72761094-A	NR	4E-11		0.0561	[0.039-0.073] unit decrease	Affymetrix [9000000] (imputed)	N
1165	chr5	76129052	76129053	rs631465	30621171	Coltell O	2019-01-04	Nutrients	Genome-Wide Association Study (GWAS) on Bilirubin Concentrations in Subjects with Metabolic Syndrome: Sex-Specific GWAS Analysis and Gene-Diet Interactions in a Mediterranean Population.	Serum bilirubin levels x sex interaction in metabolic syndrome	188 European ancestry male individuals, 242 European ancestry female individuals	NA	5q13.3	F2RL1	rs631465-?	NR	3E-6				Illumina [622468]	N
1166	chr5	76170673	76170674	rs6414971	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	5q13.3	CRHBP	rs6414971-T	0.74125	3E-79	(CRHBP, 6039_24_3)	0.51114696	[0.46-0.56] unit decrease	Illumina [> 1000000] (imputed)	N
1166	chr5	76194301	76194302	rs2359426	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CRHBP	5,363 Icelandic ancestry individuals	NA	5q13.3		rs2359426-C	0.2776	8E-148		0.505412	[0.47-0.54] unit increase	Illumina [7506463] (imputed)	N
1166	chr5	76207911	76207911	rs536720776	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5q13.3	CRHBP	rs536720776-CGTTGGCT	0.639	2E-193	(Corticotropin-releasing factor-binding protein, CRHBP.6039.24.3)	0.69	[0.65-0.73] unit decrease	Affymetrix [10572788] (imputed)	N
1166	chr5	76215348	76215349	rs577776684	34214102	Sarnowski C	2021-07-02	PLoS One	Identification of novel and rare variants associated with handgrip strength using whole genome sequence data from the NHLBI Trans-Omics in Precision Medicine (TOPMed) Program.	Hand grip strength	4878 European ancestry, African American or Afro-Caribbean, Hispanic or Latin American, Asian ancestry, Native American ancestry, Other ancestry men	NA	5q13.3		rs577776684-T	0.002	2E-8		12.22	kg decrease	NR [638486]	N
1166	chr5	76224170	76224171	rs2460504	23400010	Del-Aguila JL	2013-02-12	Pharmacogenomics J	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NA	5q13.3	IQGAP2	rs2460504-C	0.18	5E-6	(AA-triglyceride response)	24.57	[14.06-35.08] mg/dL decrease	Affymetrix, Illumina [> 2000000] (imputed)	N
1166	chr5	76241192	76241193	rs59952310	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CRHBP	5,363 Icelandic ancestry individuals	NA	5q13.3		rs59952310-G	0.03209	4E-7		0.268985	[0.16-0.37] unit decrease	Illumina [7506463] (imputed)	N
1166	chr5	76250971	76250972	rs32897	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	5q13.3	CRHBP	rs32897-T	0.8406	1E-7		0.0122696	[0.0077-0.0168] unit increase	Affymetrix [11880941] (imputed)	N
1167	chr5	76296734	76296735	rs247749	30566020	Fukaya E	2018-12-01	Circulation	Clinical and Genetic Determinants of Varicose Veins.	Varicose veins	9,577 British ancestry cases, 327,959 British ancestry controls	NA	5q13.3	NR	rs247749-C	0.29	9E-9		0.099	[0.066-0.132] unit increase	Affymetrix [10972371] (imputed)	N
1167	chr5	76327569	76327570	rs13155649	27149984	Degenhardt F	2016-05-05	Hum Mol Genet	Genome-wide association study of serum coenzyme Q10 levels identifies susceptibility loci linked to neuronal diseases.	Coenzyme Q10 levels	up to 1,300 European ancestry individuals	NA	5q13.3	Intergenic	rs13155649-G		6E-6		0.101	[0.058-0.145] unit increase	Affymetrix, Illumina [up to 17017474] (imputed)	N
1167	chr5	76404900	76404901	rs79360421	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	5q13.3	NR	rs79360421-T	0.91	1E-6		1.04	[-1.0768-3.1568]	Affymetrix [at least 143006] (imputed)	N
1167	chr5	76406469	76406470	rs28589776	33381925	Buchanan VL	2020-12-30	Pediatr Obes	Genome-wide association study identifying novel variant for fasting insulin and allelic heterogeneity in known glycemic loci in Chilean adolescents: The Santiago Longitudinal Study.	Fasting glucose	543 Chilean individuals	NA	5q13.3	ZBED3-AS1	rs28589776-T	0.01	3E-6		11.561	[6.68-16.45] unit decrease	Illumina [NR] (imputed)	N
1168	chr5	76417041	76417042	rs6453278	19812673	Weiss LA	2009-10-08	Nature	A genome-wide linkage and association scan reveals novel loci for autism.	Autism	1,553 cases from 1,031 families	2,073 trios	5q13.3	NR	rs6453278-?	NR	5E-6		1.25	[NR]	Affymetrix [~ 365000]	N
1168	chr5	76423089	76423090	rs6896578	33045005	Vogelezang S	2020-10-12	PLoS Genet	Novel loci for childhood body mass index and shared heritability with adult cardiometabolic traits.	Childhood body mass index	39,620 European ancestry individuals	NA	5q13.3	ZBED3-AS1	rs6896578-C	0.84	4E-6		0.052	[0.03-0.074] unit increase	Affymetrix, Illumina [8227808] (imputed)	N
1168	chr5	76424948	76424949	rs4457053	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	5q13.3	ZBED3	rs4457053-G	0.3036	8E-18		1.06	[1.05-1.08]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1168	chr5	76424948	76424949	rs4457053	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	5q13.3	ZBED3	rs4457053-A	0.67	9E-11	(EA)	0.0796	[0.055-0.104] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1168	chr5	76424948	76424949	rs4457053	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	5q13.3	ZBED3	rs4457053-A	0.67	5E-10		0.066	[0.044-0.088] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1168	chr5	76424948	76424949	rs4457053	20581827	Voight BF	2010-06-27	Nat Genet	Twelve type 2 diabetes susceptibility loci identified through large-scale association analysis.	Type 2 diabetes	8,130 European ancestry cases, 38,987 European ancestry controls	Up to 34,412 European ancestry cases, 59,925 European ancestry controls	5q13.3	ZBED3	rs4457053-G		3E-12		1.08	[1.06-1.11]	Affymetrix, Illumina [2426886] (imputed)	N
1168	chr5	76425059	76425060	rs4457054	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	5q13.3		rs4457054-C	NR	1E-14		0.0203	[0.015-0.025] unit decrease	Affymetrix, Illumina [20535873] (imputed)	N
1168	chr5	76425866	76425867	rs7708285	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	200,622 European ancestry individuals	NA	5q13.3	ZBED3-AS1	rs7708285-A	0.7252	1E-9		0.0133	[0.0096-0.017] unit decrease	Affymetrix, Illumina [34064007] (imputed)	N
1168	chr5	76425866	76425867	rs7708285	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting glucose	151,188 European ancestry individuals	NA	5q13.3	ZBED3	rs7708285-G	0.282676	7E-6		0.011116	[0.0063-0.016] unit increase	Affymetrix, Illumina [8700000] (imputed)	N
1168	chr5	76427310	76427311	rs6878122	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	5q13.3		rs6878122-A	NR	2E-9		0.0547	[0.037-0.073] unit decrease	Affymetrix, Illumina [25845091] (imputed)	N
1168	chr5	76427310	76427311	rs6878122	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	5q13.3		rs6878122-A	NR	7E-27		0.0262	[0.021-0.031] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
1168	chr5	76427310	76427311	rs6878122	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	5q13.3	NR	rs6878122-G	0.3114	5E-29		0.0554	[0.046-0.065] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1168	chr5	76427310	76427311	rs6878122	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	5q13.3	NR	rs6878122-A	0.6978	5E-12		0.013	[0.0093-0.0167] unit decrease	NR [~ 27400000] (imputed)	N
1168	chr5	76427310	76427311	rs6878122	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	5q13.3	ZBED3-AS1	rs6878122-G	0.318208634557753	1E-12		0.0564	[0.041-0.072] unit increase	NR [5035015] (imputed)	N
1168	chr5	76427310	76427311	rs6878122	22885922	Morris AP	2012-09-01	Nat Genet	Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes.	Type 2 diabetes	6,377 European ancestry male cases, 5,794 European ancestry female cases, 22,243 European ancestry male controls, 34,619 European ancestry female controls	12,938 European ancestry male cases, 8,553 European ancestry female cases, 904 Pakistani ancestry male cases, 274 Pakistani ancestry female cases, 30,273 European ancestry male controls, 25,374 European ancestry female controls, 2,088 Pakistani ancestry male controls, 384 Pakistani ancestry female controls	5q13.3	ZBED3	rs6878122-G	NR	3E-10	(men)	1.12	[1.08-1.15]	Affymetrix, Illumina [up to 2500000] (imputed)	N
1168	chr5	76427310	76427311	rs6878122	22885922	Morris AP	2012-09-01	Nat Genet	Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes.	Type 2 diabetes	6,377 European ancestry male cases, 5,794 European ancestry female cases, 22,243 European ancestry male controls, 34,619 European ancestry female controls	12,938 European ancestry male cases, 8,553 European ancestry female cases, 904 Pakistani ancestry male cases, 274 Pakistani ancestry female cases, 30,273 European ancestry male controls, 25,374 European ancestry female controls, 2,088 Pakistani ancestry male controls, 384 Pakistani ancestry female controls	5q13.3	ZBED3	rs6878122-G	0.2799582088267	5E-11		1.1	[1.07-1.13]	Affymetrix, Illumina [up to 2500000] (imputed)	N
1168	chr5	76435003	76435004	rs7732130	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	5q13.3	ZBED3-AS1	rs7732130-A	0.7109	7E-8		0.0083	[0.0056-0.011] unit decrease	Affymetrix, Illumina [33811881] (imputed)	N
1168	chr5	76435003	76435004	rs7732130	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	5q13.3	ZBED3-AS1	rs7732130-G	NR	3E-8		0.0168795	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
1168	chr5	76435003	76435004	rs7732130	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	5q13.3	NR	rs7732130-G	0.2954	2E-32		0.0554	[0.046-0.065] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1168	chr5	76439249	76439250	rs6885904	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	5q13.3	NR	rs6885904-A	NR	5E-20		0.0225	[0.018-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
1168	chr5	76439249	76439250	rs6885904	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	5q13.3	NR	rs6885904-A	NR	2E-10		0.0159	[0.011-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
1168	chr5	76440462	76440463	rs9293709	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	5q13.3	ZBED3-AS1	rs9293709-T	NR	1E-8		0.0163322	[0.011-0.022] unit increase	Affymetrix [319769] (imputed)	N
1168	chr5	76440462	76440463	rs9293709	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	5q13.3	ZBED3-AS1	rs9293709-T	NR	5E-8		0.0155668	[0.01-0.0212] unit increase	Affymetrix [319769] (imputed)	N
1168	chr5	76445548	76445549	rs6453285	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	5q13.3	NR	rs6453285-C	NR	9E-10		0.025	[0.017-0.033] unit decrease	Affymetrix [9000000] (imputed)	N
1168	chr5	76446102	76446103	rs4704389	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	5q13.3	NR	rs4704389-A	0.41	7E-15		0.014	[0.01-0.018] unit increase	Affymetrix [2446094] (imputed)	N
1168	chr5	76446102	76446103	rs4704389	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	5q13.3	NR	rs4704389-A	0.41	5E-8				Affymetrix [2446094] (imputed)	N
1168	chr5	76453764	76453765	rs6453287	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	5q13.3	NR	rs6453287-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
1168	chr5	76453764	76453765	rs6453287	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	5q13.3		rs6453287-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1168	chr5	76460133	76460134	rs12171500	31533690	Orlova E	2019-09-18	BMC Oral Health	Pilot GWAS of caries in African-Americans shows genetic heterogeneity.	Dental caries (decayed, missing and filled tooth surfaces)	109 African American adults	NA	5q13.3	IQGAP2, S100Z, SNORA47, CRHBP, F2R	rs12171500-?		2E-6		57.37	[41.72-73.02] unit increase	Illumina [~ 4900000] (imputed)	N
1168	chr5	76460133	76460134	rs12171500	31533690	Orlova E	2019-09-18	BMC Oral Health	Pilot GWAS of caries in African-Americans shows genetic heterogeneity.	Dental caries (decayed, missing and filled teeth)	109 African American adults	NA	5q13.3	IQGAP2, S100Z	rs12171500-?		1E-6		15.92	[11.01-20.83] unit increase	Illumina [~ 4900000] (imputed)	N
1168	chr5	76461705	76461706	rs4431325	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	5q13.3	NR	rs4431325-T	0.05920499999999995	1E-14		0.0206225	[0.015-0.026] unit increase	Affymetrix [16578495] (imputed)	N
1168	chr5	76461705	76461706	rs4431325	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	5q13.3	NR	rs4431325-T	0.058979000000000004	9E-18		0.0496715	[0.038-0.061] unit increase	Affymetrix [16580851] (imputed)	N
1168	chr5	76476456	76476457	rs2928170	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	5q13.3		rs2928170-G	NR	4E-16		0.0189	[0.014-0.023] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
1168	chr5	76477819	76477820	rs2928167	32769997	Zhou W	2020-08-07	Nat Commun	GWAS of thyroid stimulating hormone highlights pleiotropic effects and inverse association with thyroid cancer.	Thyroid stimulating hormone levels	119,715 European ancestry individuals	NA	5q13.3	PDE8B	rs2928167-G	0.133877037056213	2E-85		0.138	[0.12-0.15] SD decrease	Illumina [22400000] (imputed)	N
1168	chr5	76477819	76477820	rs2928167	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	5q13.3	intergenic	rs2928167-G	0.1277	7E-10		0.03286629	[0.022-0.043] unit increase	Affymetrix [~ 2500000] (imputed)	N
1168	chr5	76477819	76477820	rs2928167	25743335	Taylor PN	2015-03-06	Nat Commun	Whole-genome sequence-based analysis of thyroid function.	Thyroid stimulating hormone levels	2,287 European ancestry whole-genome sequenced individuals, 14,048 European ancestry individuals	NA	5q13.3	PDE8B	rs2928167-G	0.104	6E-14		0.145	[0.11-0.18] unit decrease	Illumina [at least 9558836] (imputed)	N
1168	chr5	76477872	76477872	rs77284161	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	5q13.3	NR	rs77284161-I	0.128625	4E-16		0.024553	[0.019-0.03] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
1168	chr5	76477872	76477872	rs77284161	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	5q13.3	NR	rs77284161-I	0.128596	7E-22		0.029512	[0.024-0.036] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
1168	chr5	76477872	76477872	rs77284161	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	5q13.3	NR	rs77284161-I	0.128626	1E-21		0.029343	[0.023-0.035] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
1168	chr5	76478417	76478418	rs1479559	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	5q13.3		rs1479559-T	NR	1E-14		0.0193	[0.014-0.024] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
1168	chr5	76478417	76478418	rs1479559	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	5q13.3		rs1479559-T	NR	9E-17		0.0202	[0.015-0.025] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
1168	chr5	76478417	76478418	rs1479559	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	5q13.3		rs1479559-T	0.128353	5E-14		0.024845913	[0.018-0.031] unit increase	Affymetrix [93095623] (imputed)	N
1168	chr5	76478417	76478418	rs1479559	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q13.3	NR	rs1479559-T	0.283007	5E-15				Affymetrix, Illumina [24332387] (imputed)	N
1168	chr5	76478417	76478418	rs1479559	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q13.3	NR	rs1479559-T	0.278583	1E-19				Affymetrix, Illumina [24653286] (imputed)	N
1168	chr5	76478417	76478418	rs1479559	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q13.3	NR	rs1479559-T	0.274203	2E-19				Affymetrix, Illumina [24558453] (imputed)	N
1168	chr5	76478417	76478418	rs1479559	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	5q13.3		rs1479559-?	NR	1E-11				NR [~ 8900000] (imputed)	N
1168	chr5	76479832	76479833	rs2928166	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	5q13.3		rs2928166-C	0.128202	8E-18		0.028547626	[0.022-0.035] unit increase	Affymetrix [93095623] (imputed)	N
1168	chr5	76479832	76479833	rs2928166	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	5q13.3		rs2928166-C	0.128237	2E-18		0.029044764	[0.023-0.036] unit increase	Affymetrix [93095623] (imputed)	N
1168	chr5	76479832	76479833	rs2928166	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	5q13.3	intergenic	rs2928166-C		9E-13		0.024	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
1168	chr5	76479832	76479833	rs2928166	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	5q13.3	intergenic	rs2928166-C	0.1277	3E-12		0.03737965	[0.027-0.048] unit increase	Affymetrix [~ 2500000] (imputed)	N
1168	chr5	76479832	76479833	rs2928166	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	5q13.3	intergenic	rs2928166-C	0.1277	1E-11		0.03604599	[0.026-0.046] unit increase	Affymetrix [~ 2500000] (imputed)	N
1168	chr5	76488612	76488613	rs1119208	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	5q13.3	NR	rs1119208-C	0.648496	1E-25		0.0304668	[0.025-0.036] unit increase	Affymetrix [16580851] (imputed)	N
1168	chr5	76488612	76488613	rs1119208	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	5q13.3	NR	rs1119208-C	0.648622	1E-11		0.0174527	[0.012-0.023] unit increase	Affymetrix [16585745] (imputed)	N
1168	chr5	76491856	76491857	rs77741622	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	5q13.3	NR	rs77741622-G	0.652736	9E-11		0.00878066	[0.0061-0.0114] unit increase	Affymetrix [16578495] (imputed)	N
1168	chr5	76518194	76518195	rs1993945	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hashimoto thyroiditis	15,654 European ancestry cases, 379,986 European ancestry controls, 537 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	5q13.3		rs1993945-T	NR	1E-15		0.1347	[0.1-0.17] unit increase	Affymetrix, Illumina [25797652] (imputed)	N
1168	chr5	76518441	76518442	rs4704397	22493691	Eriksson N	2012-04-06	PLoS One	Novel associations for hypothyroidism include known autoimmune risk loci.	Hypothyroidism	3,736 European ancestry cases, 35,546 European ancestry controls	NA	5q13.3	PDE8B	rs4704397-A	0.391	2E-6		1.174	[1.10-1.26]	Illumina [870065]	N
1168	chr5	76518441	76518442	rs4704397	18514160	Arnaud-Lopez L	2008-06-01	Am J Hum Genet	Phosphodiesterase 8B gene variants are associated with serum TSH levels and thyroid function.	Thyroid stimulating hormone levels	4,300 Sardinian indivduals	1,164 European ancestry individuals, 1,136 Old Order Amish individuals, 1,858 Sardinian individuals	5q13.3	PDE8B	rs4704397-A	0.44	2E-20		0.25	[0.17-0.33] uIU/ml increase	Affymetrix [362129]	N
1168	chr5	76521867	76521868	rs1382879	30367059	Teumer A	2018-10-26	Nat Commun	Genome-wide analyses identify a role for SLC17A4 and AADAT in thyroid hormone regulation.	Hypothyroidism	3,340 European ancestry cases, 49,983 European ancestry controls	NA	5q13.3	PDE8B	rs1382879-T	0.59	2E-9		0.153	[0.1-0.2] unit decrease	Affymetrix, Illumina [5965951] (imputed)	N
1168	chr5	76521867	76521868	rs1382879	25436638	Malinowski JR	2014-12-01	PLoS One	Genetic variants associated with serum thyroid stimulating hormone (TSH) levels in European Americans and African Americans from the eMERGE Network.	Serum thyroid-stimulating hormone levels	4,501 European ancestry individuals, 351 African American individuals	NA	5q13.3	PDE8B	rs1382879-G	0.39	7E-18	(EA)	0.09	[0.07-0.11] unit increase	Illumina [up to 905285]	N
1168	chr5	76528021	76528022	rs1479567	32769997	Zhou W	2020-08-07	Nat Commun	GWAS of thyroid stimulating hormone highlights pleiotropic effects and inverse association with thyroid cancer.	Thyroid stimulating hormone levels	119,715 European ancestry individuals	NA	5q13.3	PDE8B	rs1479567-A	0.394258497825997	1E-269		0.1639	[0.15-0.17] SD increase	Illumina [22400000] (imputed)	N
1168	chr5	76528021	76528022	rs1479567	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Hypothyroidism	17,558 European ancestry cases, 117,083 European ancestry controls	NA	5q13.3	PDE8B	rs1479567-?	NR	1E-23		1.1363636	[1.11-1.16]	Illumina [13676411] (imputed)	N
1168	chr5	76530348	76530349	rs6885099	23408906	Porcu E	2013-02-07	PLoS Genet	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 14,459 European ancestry females, up to 10,936 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males	NA	5q13.3	PDE8B	rs6885099-A	0.594	6E-24	(TSH - Females)	0.12	[0.096-0.144] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1168	chr5	76530348	76530349	rs6885099	23408906	Porcu E	2013-02-07	PLoS Genet	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 14,459 European ancestry females, up to 10,936 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males	NA	5q13.3	PDE8B	rs6885099-A	0.594	3E-38	(TSH - Males)	0.168	[0.14-0.19] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1168	chr5	76530348	76530349	rs6885099	23408906	Porcu E	2013-02-07	PLoS Genet	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 14,459 European ancestry females, up to 10,936 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males	NA	5q13.3	PDE8B	rs6885099-A	0.594	2E-26	(TSH)	0.141	[0.12-0.16] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1168	chr5	76535810	76535811	rs2046045	30367059	Teumer A	2018-10-26	Nat Commun	Genome-wide analyses identify a role for SLC17A4 and AADAT in thyroid hormone regulation.	Hyperthyroidism	1,840 European ancestry cases, 49,983 European ancestry controls	NA	5q13.3	PDE8B	rs2046045-T	0.6	4E-22		0.329	[0.26-0.4] unit increase	Affymetrix, Illumina [5965951] (imputed)	N
1168	chr5	76535810	76535811	rs2046045	25743335	Taylor PN	2015-03-06	Nat Commun	Whole-genome sequence-based analysis of thyroid function.	Thyroid stimulating hormone levels	2,287 European ancestry whole-genome sequenced individuals, 14,048 European ancestry individuals	NA	5q13.3	PDE8B	rs2046045-G	0.414	4E-33		0.142	[0.12-0.17] unit increase	Illumina [at least 9558836] (imputed)	N
1168	chr5	76535810	76535811	rs2046045	22494929	Rawal R	2012-04-16	Hum Mol Genet	Meta-analysis of two genome-wide association studies identifies four genetic loci associated with thyroid function.	Thyroid function	3,736 European ancestry individuals	3,727 European ancestry individuals	5q13.3	PDE8B	rs2046045-T	0.618	3E-27		0.115	[0.093-0.137] unit decrease	Affymetrix, Illumina [2524918] (imputed)	N
1168	chr5	76543602	76543603	rs10036386	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	5q13.3		rs10036386-T	NR	1E-10		0.058	[0.04-0.076] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1168	chr5	76543602	76543603	rs10036386	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	5q13.3	PDE8B	rs10036386-T	0.381268	6E-12		0.06467282	[0.046-0.083] unit increase	Affymetrix [7288503] (imputed)	N
1168	chr5	76543602	76543603	rs10036386	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	5q13.3		rs10036386-?	NR	5E-13				NR [~ 8900000] (imputed)	N
1168	chr5	76543767	76543768	rs6867654	32581359	Saevarsdottir S	2020-06-24	Nature	FLT3 stop mutation increases FLT3 ligand level and risk of autoimmune thyroid disease.	Autoimmune thyroid disease	30,234 European ancestry cases, 724,172 European ancestry controls	NA	5q13.3	PDE8B	rs6867654-A	0.386	3E-12		1.07	[NR]	Affymetrix, Illumina [42900000] (imputed)	N
1168	chr5	76544156	76544157	rs1479565	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hypothyroidism	30,155 European ancestry cases, 379,986 European ancestry controls, 1,114 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	5q13.3		rs1479565-A	NR	8E-22		0.0975	[0.078-0.117] unit increase	Affymetrix, Illumina [25801083] (imputed)	N
1169	chr5	76549687	76549688	rs4703730	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	5q13.3	PDE8B	rs4703730-T	0.516732	1E-13		0.016381875	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1169	chr5	76549687	76549688	rs4703730	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	5q13.3	PDE8B	rs4703730-T	0.516742	1E-15		0.017772496	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1169	chr5	76549687	76549688	rs4703730	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	5q13.3	NR	rs4703730-T	0.516976	7E-16		0.016026	[0.012-0.02] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
1169	chr5	76549687	76549688	rs4703730	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	5q13.3		rs4703730-?	NR	1E-17				NR [~ 8900000] (imputed)	N
1169	chr5	76551009	76551010	rs4704400	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	5q13.3		rs4704400-C	NR	6E-12		0.0113	[0.0082-0.0144] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
1169	chr5	76552848	76552849	rs1479595	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q13.3	NR	rs1479595-A	0.522622	8E-17				Affymetrix, Illumina [19872809] (imputed)	N
1169	chr5	76581257	76581258	rs7721608	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	5q13.3	PDE8B	rs7721608-T	0.4648	2E-9		1.0206095		Affymetrix [11880941] (imputed)	N
1169	chr5	76591100	76591101	rs181851	28076899	Taylor KE	2017-01-11	Arthritis Rheumatol	Genome-Wide Association Analysis Reveals Genetic Heterogeneity of Sjogren's Syndrome According to Ancestry.	Sjogren's syndrome	585 European ancestry cases, 1,546 European ancestry controls	NA	5q13.3	PDE8B	rs181851-?		3E-6		1.4925373	[1.27-1.79]	Illumina [1444884]	N
1169	chr5	76599021	76599022	rs1382894	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	5q13.3	NA	rs1382894-A	0.6486	9E-10		0.0114	[0.0077-0.0151] unit increase	NR [~ 27400000] (imputed)	N
1169	chr5	76620001	76620002	rs10474500	28076899	Taylor KE	2017-01-11	Arthritis Rheumatol	Genome-Wide Association Analysis Reveals Genetic Heterogeneity of Sjogren's Syndrome According to Ancestry.	Sjogren's syndrome	585 European ancestry cases, up to 51 African ancestry cases, up to 164 Hispanic/Native american cases, up to 570 Asian ancestry cases, up to 59 cases, 1,546 European ancestry controls, 495 African ancestry controls, 237 Hispanic/Native American controls, 306 Asian ancestry controls, 148 controls.	NA	5q13.3	PDE8B	rs10474500-?		8E-6		1.3333333	[1.18-1.52]	Illumina [1444884]	N
1169	chr5	76657424	76657425	rs180776515	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	5q13.3	WDR41	rs180776515-T	0.0149800234836862	4E-8	(C_Gammaproteobacteria_HB)	1.35047	[0.87-1.83] unit decrease	Illumina [7711310] (imputed)	N
1169	chr5	76675417	76675418	rs7715119	34775353	Mousa M	2021-11-11	EBioMedicine	Genome-wide association study of hospitalized COVID-19 patients in the United Arab Emirates.	COVID-19 severity	72 East Asian ancestry cases, 35 East Asian ancestry controls, 81 South Asian ancestry cases, 18 South Asian ancestry controls, 210 European ancestry cases, 92 European ancestry controls, 90 American ancestry cases, 12 American ancestry controls	NA	5q13.3		rs7715119-A	0.15	2E-6		0.34	[0.22-0.54]	Illumina [9175654] (imputed)	N
1170	chr5	76702064	76702065	rs71632922	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	5q13.3	WDR41	rs71632922-C	0.0678143736881025	8E-7	(C_Gammaproteobacteria_HB)	0.618084	[0.37-0.86] unit decrease	Illumina [7711310] (imputed)	N
1170	chr5	76712906	76712907	rs62362510	26835600	Hu Y	2016-02-02	Nat Commun	GWAS of 89,283 individuals identifies genetic variants associated with self-reporting of being a morning person.	Morning vs. evening chronotype	38,937 European ancestry morning chronotype individuals, 50,346 European ancestry evening chronotype individuals	NA	5q13.3	NR	rs62362510-?	NR	8E-6				Illumina [7427422] (imputed)	N
1170	chr5	76717375	76717376	rs116079251	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		AC022414.1	rs116079251-?	NR	4E-8	(female)	0.356994	[NR] unit increase	Affymetrix [NR] (imputed)	N
1170	chr5	76729520	76729521	rs335629	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	5q13.3	NR	rs335629-A	0.48545000000000005	1E-8		0.00420897	[0.0026-0.0059] unit increase	Affymetrix [16582909] (imputed)	N
1170	chr5	76729520	76729521	rs335629	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	5q13.3	NR	rs335629-A	0.48545000000000005	6E-8		0.00455215	[0.0027-0.0064] unit increase	Affymetrix [16582965] (imputed)	N
1170	chr5	76734083	76734084	rs33204	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	5q13.3		rs33204-T	NR	1E-9		0.0116	[0.0079-0.0153] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
1170	chr5	76734083	76734084	rs33204	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	5q13.3	WDR41	rs33204-C	0.56	3E-8		5.56	z-score increase	Affymetrix [4314223] (imputed)	N
1170	chr5	76742614	76742615	rs560546550	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	Body fat percentage	19,480 British ancestry individuals from 6863 families.	NA	5q13.3	WDR41	rs560546550-C	7.0E-4	3E-9		9.339747	[6.25-12.43] % decrease	Illumina [24111857] (imputed)	N
1170	chr5	76767691	76767692	rs335650	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	5q13.3		rs335650-?	NR	1E-12				NR [~ 8900000] (imputed)	N
1170	chr5	76781470	76781471	rs163030	21502949	Stein JL	2011-04-19	Mol Psychiatry	Discovery and replication of dopamine-related gene effects on caudate volume in young and elderly populations (N=1198) using genome-wide search.	Caudate nucleus volume	734 European ancestry individuals	464 European ancestry individuals	5q13.3	PDE8B, WDR41	rs163030-A	0.50	2E-7	(Right caudate)	117.5	[73.01-161.99] mm3 increase	Illumina [520459]	N
1171	chr5	76809480	76809481	rs78269837	32308125	Wolking S	2020-04-20	Pharmacogenomics	Pharmacoresponse in genetic generalized epilepsy: a genome-wide association study.	Response to valproic acid in genetic generalized epilepsy	410 European ancestry responders, 155 European ancestry non-responders	NA	5q13.3	WDR41	rs78269837-?	NR	5E-6				Affymetrix, Illumina [at least 3287443] (imputed)	N
1171	chr5	76847498	76847499	rs6453319	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	5q13.3	WDR41	rs6453319-A	0.3986	4E-6		0.0019	[0.0013-0.0025] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
1171	chr5	76852233	76852234	rs116300850	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	5q13.3	Intergenic	rs116300850-T	NR	7E-7	(between families)	4.963	unit increase	Affymetrix [up to 15107142] (imputed)	N
1171	chr5	76863589	76863590	rs79493336	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		WDR41	rs79493336-?	NR	1E-10	(female)	0.486698	[NR] unit increase	Affymetrix [NR] (imputed)	N
1171	chr5	76866695	76866696	rs13359742	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	5q13.3		rs13359742-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1171	chr5	76912497	76912498	rs137887044	34064523	Rodrigo LM	2021-05-04	Genes (Basel)	Imputation and Reanalysis of ExomeChip Data Identifies Novel, Conditional and Joint Genetic Effects on Parkinson's Disease Risk.	Parkinson's disease	5,167 European ancestry cases, 5,366 European ancestry controls	NA		WDR41	rs137887044-C	0.972	2E-8		1.8504	[1.4908-2.27}	Illumina [1465938] (imputed)	N
1171	chr5	76931738	76931738	rs71301503	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	5q14.1	OTP	rs71301503-A	0.661411	3E-8		0.0123661	[0.008-0.0167] unit increase	NR [16516521] (imputed)	N
1172	chr5	76958843	76958844	rs1013793398	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	5q14.1		rs1013793398-T	4.9699999999997E-4	3E-18		0.47353852	[0.37-0.58] unit increase	Affymetrix [93095623] (imputed)	N
1172	chr5	76981462	76981463	rs2662368	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	5q14.1	intergenic	rs2662368-G	0.3149	5E-12		0.02677238	[0.019-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
1172	chr5	76983193	76983194	rs5000565	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	5q14.1	TBCA	rs5000565-A	0.115806	1E-13		0.026089763	[0.019-0.033] unit increase	Affymetrix [93095623] (imputed)	N
1172	chr5	76988511	76988515	rs10541015	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	5q14.1	TBCA	rs10541015-C	0.115492	1E-17		0.031017797	[0.024-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
1172	chr5	77058999	77059000	rs12654597	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	5q14.1	TBCA	rs12654597-A	0.162088	1E-9		0.019809647	[0.013-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1173	chr5	77071702	77071703	rs254415	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	5q14.1	TBCA	rs254415-T	0.302981	1E-27		0.027499419	[0.023-0.032] unit increase	Affymetrix [93095623] (imputed)	N
1173	chr5	77090926	77090927	rs62364881	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	5q14.1	TBCA	rs62364881-A	0.452804	6E-13		0.01757248	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1173	chr5	77138816	77138817	rs111778721	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5q14.1	TBCA	rs111778721-C	0.963504	5E-8	(10 ms)	0.0819697	[0.052-0.112] unit increase	Affymetrix [10000000] (imputed)	N
1173	chr5	77138816	77138817	rs111778721	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5q14.1	TBCA	rs111778721-C	0.963504	3E-8	(6 ms)	0.0830913	[0.053-0.113] unit increase	Affymetrix [10000000] (imputed)	N
1173	chr5	77138816	77138817	rs111778721	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5q14.1	TBCA	rs111778721-C	0.963504	1E-8	(8 ms)	0.0853889	[0.055-0.116] unit increase	Affymetrix [10000000] (imputed)	N
1173	chr5	77142787	77142788	rs199929635	30498476	Liu H	2018-11-15	Front Endocrinol (Lausanne)	Heritability and Genome-Wide Association Study of Plasma Cholesterol in Chinese Adult Twins.	High density lipoprotein cholesterol levels	139 Chinese ancestry dizygotic twin pairs	NA	5q14.1	LOC101929154	rs199929635-?		7E-7				Illumina [7405822] (imputed)	N
1173	chr5	77146980	77146981	rs6877994	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	5q14.1	TBCA	rs6877994-C	0.4842	1E-10		0.012	[0.0083-0.0157] unit decrease	Affymetrix [18391927] (imputed)	N
1173	chr5	77146980	77146981	rs6877994	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5q14.1		rs6877994-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1173	chr5	77147786	77147787	rs7700998	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	5q14.1		rs7700998-?	NR	4E-10				NR [~ 8900000] (imputed)	N
1173	chr5	77167971	77167972	rs920709	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5q14.1	AP3B1	rs920709-?	NR	2E-7	(carnosine)	0.67344856	[0.42-0.93] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1173	chr5	77177467	77177468	rs9293725	34337005	Duan H	2021-07-17	Biomed Res Int	A Genome-Wide Association Study of Age-Related Hearing Impairment in Middle- and Old-Aged Chinese Twins.	Hearing function (0.5 kHz)	131 Chinese ancestry dizygotic twin pairs	NA	5q14.1		rs9293725-?	NR	5E-6				Illumina [1365315]	N
1174	chr5	77208229	77208230	rs114301391	31935283	Du Z	2020-01-01	Blood Adv	A meta-analysis of genome-wide association studies of multiple myeloma among men and women of African ancestry.	Multiple myeloma	1,813 African American and African ancestry cases, 8,871 African American and African ancestry controls	NA	5q14.1	NR	rs114301391-T	0.01	7E-7		2.37	[1.69-3.34]	Illumina [12683648] (imputed)	N
1174	chr5	77221014	77221015	rs192426480	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	5q14.1	NR	rs192426480-?	NR	3E-6		0.0077842	[0.0045-0.011] unit decrease	Affymetrix [805426] (imputed)	N
1174	chr5	77273253	77273254	rs355415	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric bone mineral content (radius)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	5q14.1	NR	rs355415-G	0.112	7E-6		0.235	[0.13-0.34] unit increase	Illumina [~ 6600000] (imputed)	N
1174	chr5	77291939	77291940	rs12655917	21901158	Irvin MR	2011-08-25	PLoS One	Genome-wide detection of allele specific copy number variation associated with insulin resistance in African Americans from the HyperGEN study.	Insulin resistance/response	1,040 African American individuals	NA	5q14.1	AP3B1	rs12655917-C	0.01	6E-7	(Insulin)	40.0	[27 - 51] % decrease	Affymetrix [872243]	N
1175	chr5	77348639	77348640	rs73132886	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	5q14.1	intergenic	rs73132886-C	0.001	1E-6		34.08	[3.52-329.69]	Illumina [1556551]	N
1175	chr5	77380722	77380723	rs252761	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	5q14.1	AP3B1	rs252761-G	0.412075	3E-13		0.00163263	[0.0012-0.0021] unit decrease	Affymetrix [13995440] (imputed)	N
1175	chr5	77380722	77380723	rs252761	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	5q14.1	AP3B1	rs252761-T	0.59	3E-8		5.55	z-score increase	Affymetrix [4311822] (imputed)	N
1175	chr5	77380722	77380723	rs252761	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	5q14.1	NR	rs252761-T	NR	1E-12		0.0173	[0.013-0.022] unit increase	Affymetrix [9000000] (imputed)	N
1175	chr5	77389972	77389973	rs252749	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		5q14.1	AP3B1	rs252749-G	0.754126	2E-9		0.00951744	[0.0064-0.0126] unit increase	Affymetrix [12370749]	N
1175	chr5	77389972	77389973	rs252749	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	5q14.1		rs252749-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1175	chr5	77392116	77392117	rs252746	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FVC)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		5q14.1		rs252746-?	NR	1E-10	(EA)	25.37	[17.67-33.07] unit increase	Affymetrix, Illumina [10900000] (imputed)	N
1175	chr5	77392116	77392117	rs252746	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FEV1)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		5q14.1	AP3B1	rs252746-A	0.78	6E-9	(EA)	20.05	[13.29-26.81] ml increase	Affymetrix, Illumina [10900000] (imputed)	N
1175	chr5	77396399	77396400	rs425102	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	5q14.1	AP3B1	rs425102-T	0.7597	3E-14		0.0209	[0.015-0.026] unit increase	Affymetrix [19819130] (imputed)	N
1175	chr5	77396399	77396400	rs425102	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	5q14.1	AP3B1	rs425102-T	0.7597	7E-9		0.0159	[0.011-0.021] unit increase	Affymetrix [19819130] (imputed)	N
1175	chr5	77401087	77401100	rs141983696	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	5q14.1		rs141983696-A	NR	5E-23		0.0212	[0.017-0.025] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1175	chr5	77424835	77424836	rs1422067	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	5q14.1	AP3B1	rs1422067-C	0.762745	4E-11		0.0108803	[0.0077-0.0141] unit increase	Affymetrix [12370749]	N
1175	chr5	77430425	77430426	rs1978427	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	5q14.1		rs1978427-A	NR	1E-31		0.0201	[0.017-0.023] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1175	chr5	77430425	77430426	rs1978427	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5q14.1		rs1978427-?	NR	1E-37				NR [~ 8900000] (imputed)	N
1175	chr5	77440195	77440196	rs72776440	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FVC)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		5q14.1	AP3B1	rs72776440-C	0.22	3E-11	(EA)	24.97	[17.62-32.32] unit decrease	Affymetrix, Illumina [10900000] (imputed)	N
1175	chr5	77440195	77440196	rs72776440	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FVC)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		5q14.1	AP3B1	rs72776440-C	0.21	3E-11		21.3	[15.01-27.59] ml decrease	Affymetrix, Illumina [10900000] (imputed)	N
1175	chr5	77440195	77440196	rs72776440	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FEV1)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		5q14.1		rs72776440-?	NR	3E-7		14.41	[8.92-19.9] unit decrease	Affymetrix, Illumina [10900000] (imputed)	N
1175	chr5	77446602	77446603	rs66637616	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	5q14.1		rs66637616-A	NR	3E-8		0.0112	[0.0073-0.0151] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1175	chr5	77446724	77446725	rs72776445	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	5q14.1		rs72776445-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1175	chr5	77450827	77450828	rs12513481	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	5q14.1	NR	rs12513481-?	NR	8E-12		0.17664	[0.13-0.23] unit decrease	Affymetrix [7794483] (imputed)	N
1175	chr5	77450827	77450828	rs12513481	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	5q14.1	NR	rs12513481-?	NR	4E-8	(male)	0.22484	[0.14-0.3] unit decrease	Affymetrix [7794483] (imputed)	N
1175	chr5	77450827	77450828	rs12513481	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FVC)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		5q14.1	AP3B1	rs12513481-C	0.23	2E-11	(EA)	25.01	[17.68-32.34] ml decrease	Affymetrix, Illumina [10900000] (imputed)	N
1175	chr5	77450827	77450828	rs12513481	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FEV1)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		5q14.1		rs12513481-?	NR	9E-9	(EA)	18.87	[12.44-25.3] unit decrease	Affymetrix, Illumina [10900000] (imputed)	N
1176	chr5	77467823	77467824	rs35611929	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Knee osteoarthritis	24,955 European ancestry cases, 378,169 European ancestry controls	NA	5q14.1	NR	rs35611929-A	0.34	1E-8		1.06	[1.04-1.08]	Affymetrix, Illumina [up to 17000000] (imputed)	N
1176	chr5	77495030	77495031	rs72776472	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	5q14.1		rs72776472-?	NR	2E-15				NR [~ 8900000] (imputed)	N
1176	chr5	77501685	77501686	rs5868907	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	5q14.1		rs5868907-A	NR	1E-11		0.016	[0.011-0.021] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
1176	chr5	77519058	77519059	rs77853392	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	5q14.1	NR	rs77853392-?	NR	1E-8				Illumina [7760689] (imputed)	N
1176	chr5	77529143	77529144	rs111735044	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	5q14.1	AP3B1	rs111735044-A	NR	8E-15		0.0280262	[0.021-0.035] unit decrease	Affymetrix [323123] (imputed)	N
1176	chr5	77532067	77532068	rs77741372	31049640	Chen J	2019-05-02	Diabetologia	Genome-wide association study of type 2 diabetes in Africa.	Type 2 diabetes	2,633 African ancestry cases, 1,714 African ancestry controls	NA	5q14.1	AP3B1	rs77741372-C	0.031	8E-6		1.41	[1.13-1.75]	Affymetrix, Illumina [12148595] (imputed)	N
1176	chr5	77563262	77563263	rs10065892	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	5q14.1		rs10065892-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1176	chr5	77568836	77568836	rs140334114	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	5q14.1	AP3B1	rs140334114-CATACATATACACACATATATGTATGCAT	0.309904	2E-9		0.014326084	[0.0096-0.019] unit increase	Affymetrix [93095623] (imputed)	N
1176	chr5	77590421	77590422	rs572880838	34782459	Shevchenko AK	2021-11-01	Proc Natl Acad Sci U S A	Genome-wide association study reveals genetic variants associated with HIV-1C infection in a Botswana study population.	HIV-1 susceptibility	256 Sub-Saharan African ancestry cases, 80 Sub-Saharan African ancestry controls	NA	5q14.1		rs572880838-G	NR	8E-9		6.711		NR [8636400]	N
1177	chr5	77624013	77624014	rs9293741	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	5q14.1	NR	rs9293741-A	NR	1E-6		1.06	[NR]	Illumina [7158791] (imputed)	N
1177	chr5	77630853	77630854	rs6881634	19668339	Potkin SG	2009-08-07	PLoS One	Hippocampal atrophy as a quantitative trait in a genome-wide association study identifying novel susceptibility genes for Alzheimer's disease.	Hippocampal atrophy	162 European ancestry cases, 192 European ancestry controls, 7 African American cases, 14 African American controls, 1 Asian ancestry cases, 3 Asian ancestry controls, 2 cases	NA	5q14.1	SCAMP1, LHFPL2	rs6881634-?	NR	2E-6				Illumina [516645]	N
1177	chr5	77631633	77631634	rs4588572	26780889	Below JE	2016-01-19	Sci Rep	Meta-analysis of lipid-traits in Hispanics identifies novel loci, population-specific effects, and tissue-specific enrichment of eQTLs.	Triglycerides	4,383 Mexican ancestry individuals	7,876 Latin American/Hispanic individuals,  European ancestry individuals (Global Lipids Genetics Consortium et al, 2013)	5q14.1	AP3B1, SCAMP1	rs4588572-A	0.639	7E-8	(Hispanic)	0.072	[0.047-0.097] unit increase	Affymetrix [at least 370268] (imputed)	N
1177	chr5	77645044	77645045	rs62362576	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 2 levels	252 European ancestry individuals	NA	5q14.1		rs62362576-T	NR	3E-6		1.0704	[0.63-1.51] unit increase	Illumina [NR] (imputed)	N
1177	chr5	77660451	77660452	rs7703407	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	5q14.1		rs7703407-A	0.502	5E-16				Affymetrix [10369434] (imputed)	N
1177	chr5	77683506	77683507	rs28727880	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	5q14.1		rs28727880-A	NR	2E-27		0.0235	[0.019-0.028] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1177	chr5	77683506	77683507	rs28727880	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	5q14.1	SCAMP1	rs28727880-A	0.495223	2E-12		0.019543054	[0.014-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1177	chr5	77702359	77702360	rs6453383	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5q14.1		rs6453383-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1177	chr5	77709429	77709430	rs4529173	31926635	Coleman JRI	2019-11-01	Biol Psychiatry	The Genetics of the Mood Disorder Spectrum: Genome-wide Association Analyses of More Than 185,000 Cases and 439,000 Controls.	Bipolar disorder or major depressive disorder	164,933 European ancestry major depressive disorder cases, 20,352 European ancestry bipolar disorder cases, 439,741 European ancestry controls	NA	5q14.1	NR	rs4529173-C	NR	4E-9		1.0309278		NR [NR] (imputed)	N
1177	chr5	77710879	77710880	rs6896927	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	5q14.1	Intergenic	rs6896927-T	0.2404	3E-8	(MTAG)	0.0117	[0.0076-0.0158] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1177	chr5	77710879	77710880	rs6896927	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	5q14.1	Intergenic	rs6896927-T	0.2404	3E-9		0.0136	[0.0091-0.0181] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1178	chr5	77739826	77739827	rs3952231	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	5q14.1	SCAMP1	rs3952231-G	0.464	7E-9		0.073	[0.048-0.098] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1178	chr5	77745175	77745176	rs9293749	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	5q14.1	NR	rs9293749-?	NR	9E-17				Affymetrix [NR]	N
1178	chr5	77768301	77768302	rs1560197	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	5q14.1	Intergenic	rs1560197-T	0.2068	2E-8		0.0157	[0.01-0.021] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1178	chr5	77779737	77779738	rs12652692	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	5q14.1	LHFPL2, SCAMP1	rs12652692-G	0.25796	2E-34		0.03149061	[0.026-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
1178	chr5	77785721	77785725	rs72315235	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	5q14.1	LHFPL2	rs72315235-C	0.2568	5E-22		0.04061385	[0.032-0.049] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1178	chr5	77785721	77785725	rs72315235	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	5q14.1	LHFPL2	rs72315235-C	0.2569	2E-15		0.03283704	[0.025-0.041] unit increase	Affymetrix [~ 2500000] (imputed)	N
1178	chr5	77785721	77785725	rs72315235	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	5q14.1	LHFPL2	rs72315235-C	0.2568	7E-18		0.03612216	[0.028-0.044] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1178	chr5	77785739	77785740	rs56373295	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	5q14.1	LHFPL2	rs56373295-A	0.255113	2E-15		0.025293587	[0.019-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
1178	chr5	77799835	77799836	rs6453397	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	5q14.1	LHFPL2	rs6453397-T	0.291293	9E-50		0.036942597	[0.032-0.042] unit increase	Affymetrix [93095623] (imputed)	N
1178	chr5	77800587	77800588	rs2277015	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	5q14.1		rs2277015-?	NR	1E-7				NR [~ 8900000] (imputed)	N
1178	chr5	77823272	77823273	rs16876265	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q14.1	NR	rs16876265-A	0.01916	3E-9	(AKR7A3)	0.8024	NR unit increase	Illumina [1671387] (imputed)	N
1178	chr5	77828815	77828816	rs6453400	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	5q14.1		rs6453400-?	NR	1E-13				NR [~ 8900000] (imputed)	N
1178	chr5	77831070	77831071	rs7709066	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	5q14.1	LHFPL2, ARSB	rs7709066-C	0.454776	3E-8		0.014374	[0.0093-0.0194] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1178	chr5	77837788	77837789	rs10057188	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Pulse pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	5q14.1	LHFPL2	rs10057188-A	0.46	7E-11		0.205	[0.15-0.26] unit decrease	Affymetrix [~ 9800000] (imputed)	N
1178	chr5	77837788	77837789	rs10057188	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	5q14.1	LHFPL2	rs10057188-G		2E-6		0.182	unit increase	Affymetrix [at least 2696785] (imputed)	N
1178	chr5	77837788	77837789	rs10057188	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	5q14.1	LHFPL2	rs10057188-G		3E-9		0.153	unit increase	Affymetrix [at least 2696785] (imputed)	N
1178	chr5	77837938	77837938	rs36078151	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	5q14.1	LHFPL2	rs36078151-CT	0.4101	6E-13		0.1901	[0.14-0.24] mmHg decrease	Affymetrix [NR] (imputed)	N
1178	chr5	77846553	77846554	rs10942863	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	5q14.1		rs10942863-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1178	chr5	77853084	77853085	rs34797797	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	5q14.1	LHFPL2	rs34797797-A	0.4267	1E-13		0.2473	[0.18-0.31] mmHg decrease	Affymetrix [NR] (imputed)	N
1179	chr5	77860607	77860608	rs344650	27402877	Hill-Burns EM	2016-07-11	Hum Mol Genet	Identification of genetic modifiers of age-at-onset for familial Parkinson's disease.	Parkinson's disease (familial, age at onset)	431 European ancestry cases	737 European ancestry cases	5q14.1	LHFPL2	rs344650-G	0.016	1E-11		3.4	[2.39-4.85]	Illumina [7200000] (imputed)	N
1179	chr5	77870699	77870700	rs12697889	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	5q14.1		rs12697889-A	NR	3E-17		0.0164	[0.013-0.02] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
1179	chr5	77876441	77876445	rs71613972	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	5q14.1		rs71613972-C	NR	9E-12		0.0139	[0.01-0.0178] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1179	chr5	77900923	77900924	rs143759184	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	5q14.1		rs143759184-C	NR	1E-6		3.9263	[2.39-5.46] unit increase	Illumina [NR] (imputed)	N
1179	chr5	77974426	77974427	rs168189	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	5q14.1	NR	rs168189-T	0.27959100000000003	5E-13		0.0202832	[0.015-0.026] unit increase	Affymetrix [16585745] (imputed)	N
1179	chr5	77987523	77987524	rs784420	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	5q14.1	NR	rs784420-G	0.288392	3E-21		0.0129787	[0.01-0.016] unit increase	Affymetrix [16578495] (imputed)	N
1179	chr5	77987523	77987524	rs784420	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	5q14.1	NR	rs784420-G	0.28869999999999996	1E-39		0.0390185	[0.033-0.045] unit increase	Affymetrix [16580851] (imputed)	N
1179	chr5	77987523	77987524	rs784420	22566634	Benjamin DJ	2012-05-07	Proc Natl Acad Sci U S A	The genetic architecture of economic and political preferences.	Economic and political preferences	9,617 European ancestry individuals	NA	5q14.1	intergenic	rs784420-G	NR	8E-6	(Trust)	0.12	[0.067-0.173] unit decrease	Illumina [628922]	N
1180	chr5	78017767	78017768	rs475655	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Gamma glutamyl transferase levels in low alcohol consumption	8,716 individuals	NA	5q14.1	NR	rs475655-?	NR	5E-6		0.0537	[0.031-0.077] unit increase	Illumina [~ 7800000] (imputed)	N
1180	chr5	78021217	78021218	rs7714373	32472697	Verma SS	2020-05-30	Clin Pharmacol Ther	Genome-wide association study of platelet reactivity and cardiovascular response in patients treated with clopidogrel: a study by the International Clopidogrel Pharmacogenomics Consortium (ICPC).	Cardiovascular death, myocardial infarction or stroke in response to clopidogrel treatment	72 European ancestry cases, 1,375 European ancestry controls	NA	5q14.1	AP3B1, LOC100422441, TRNAQ33P	rs7714373-G	0.829285	8E-6		2.4056714	NR	Illumina [5009928] (imputed)	N
1180	chr5	78040986	78040987	rs4704519	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	5q14.1	LHFPL2, ARSB	rs4704519-?	NR	6E-16		0.5855	[0.44-0.73] unit increase	Affymetrix [11100000] (imputed)	N
1180	chr5	78042322	78042323	rs16875861	30353303	Seo M	2018-10-23	J Mol Med (Berl)	Genomics and response to long-term oxygen therapy in chronic obstructive pulmonary disease.	Response to long-term oxygen therapy in chronic obstructive pulmonary disease	290 European ancestry individuals	NA	5q14.1	NR	rs16875861-?	NR	6E-6				Illumina [5946283] (imputed)	N
1180	chr5	78044909	78044910	rs185237819	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	5q14.1	Intergenic	rs185237819-G	1.0	2E-6	(AA)	0.631	unit increase	Illumina [NR] (imputed)	N
1180	chr5	78055482	78055483	rs62377483	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 21, depth of nasal alae)	2,187 European ancestry individuals	NA	5q14.1	NR	rs62377483-C	0.04688	4E-6		0.3349	[0.19-0.48] unit decrease	Illumina [10677593] (imputed)	N
1180	chr5	78066630	78066631	rs4704521	24869959	Jacobs LC	2014-08-01	JAMA Dermatol	Intrinsic and extrinsic risk factors for sagging eyelids.	Upper eyelid sagging severity	6,631 European ancestry individuals	NA	5q14.1	Intergenic	rs4704521-T	0.35	3E-6	(recessive)	0.15	[NR] unit decrease	Illumina [at least 2149245] (imputed)	N
1180	chr5	78105346	78105347	rs10514108	30468137	Fabbri C	2018-11-23	Br J Psychiatry	Genome-wide association study of treatment-resistance in depression and meta-analysis of three independent samples.	Depressive symptom improvement	1,378 European ancestry treatment resistant cases, 934 European ancestry responders to first treatment	NA	5q14.1	ARSB	rs10514108-T	0.1	1E-6		0.13	[0.071-0.189] unit decrease	Affymetrix, Illumina [7000000] (imputed)	N
1180	chr5	78110531	78110532	rs6453417	23728934	Yang L	2013-05-31	Am J Med Genet B Neuropsychiatr Genet	Polygenic transmission and complex neuro developmental network for attention deficit hyperactivity disorder: genome-wide association study of both common and rare variants.	Attention deficit hyperactivity disorder	1,040 Han Chinese ancestry cases, 963 Han Chinese ancestry controls	NA	5q14.1	ARSB	rs6453417-?	NR	5E-6				Affymetrix [656051]	N
1180	chr5	78115510	78115511	rs16875961	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5q14.1	LHFPL2	rs16875961-?	NR	5E-6	(dimethylglycine)	0.60875225	[0.35-0.87] unit increase	Affymetrix [at least 2500000] (imputed)	N
1181	chr5	78122115	78122116	rs13188817	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	5q14.1	NR	rs13188817-?	NR	2E-8				Illumina [7760689] (imputed)	N
1181	chr5	78170527	78170528	rs11748603	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5q14.1		rs11748603-?	NR	5E-12				NR [~ 8900000] (imputed)	N
1181	chr5	78184402	78184403	rs6893857	26956414	Berndt SI	2016-03-09	Nat Commun	Meta-analysis of genome-wide association studies discovers multiple loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	3,100 European ancestry cases, 7,667 European ancestry controls	1,958 cases,  5,530 controls	5q14.1	NR	rs6893857-C	0.183	2E-6		1.17	[1.10-1.25]	Affymetrix, Illumina [~ 8500000] (imputed)	N
1181	chr5	78196688	78196689	rs13159135	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5q14.1	ARSB	rs13159135-C	0.434	6E-18	(Arylsulfatase B, ARSB.3172.28.2)	0.21	[0.17-0.25] unit decrease	Affymetrix [10572788] (imputed)	N
1181	chr5	78201832	78201833	rs6865582	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	5q14.1	ARSB	rs6865582-G	0.462043	2E-10		0.014143453	[0.0098-0.0185] unit decrease	Affymetrix [93095623] (imputed)	N
1181	chr5	78201832	78201833	rs6865582	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	5q14.1	ARSB	rs6865582-G	0.4638917	7E-14	(EA, Arylsulfatase B)	0.3291	[0.24-0.41] unit decrease	Affymetrix [509946]	N
1181	chr5	78202825	78202826	rs337853	28031287	Sasayama D	2016-11-26	Hum Mol Genet	Genome-wide quantitative trait loci mapping of the human cerebrospinal fluid proteome.	Cerebrospinal fluid biomarker levels	133 Japanese ancestry individuals.	NA	5q14.1	NR	rs337853-?	NR	1E-12	(Arylsulfatase B)			Illumina [514227]	N
1181	chr5	78210724	78210725	rs9293758	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	5q14.1		rs9293758-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1181	chr5	78217694	78217695	rs10045962	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	5q14.1	ARSB	rs10045962-C	0.652369	6E-9		0.0113287	[0.0075-0.0151] unit decrease	NR [13737936] (imputed)	N
1181	chr5	78217694	78217695	rs10045962	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	5q14.1		rs10045962-?	NR	1E-10		0.0131696	[0.0089-0.0175] unit decrease	Affymetrix [20259828] (imputed)	N
1181	chr5	78234277	78234278	rs77568003	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Non-word reading	3,409 European ancestry individuals	NA	5q14.1	ARSB	rs77568003-C	0.936651714	6E-6		0.286502	[0.16-0.41] unit increase	Illumina [6969139] (imputed)	N
1182	chr5	78259887	78259888	rs337847	19668339	Potkin SG	2009-08-07	PLoS One	Hippocampal atrophy as a quantitative trait in a genome-wide association study identifying novel susceptibility genes for Alzheimer's disease.	Hippocampal atrophy	162 European ancestry cases, 192 European ancestry controls, 7 African American cases, 14 African American controls, 1 Asian ancestry cases, 3 Asian ancestry controls, 2 cases	NA	5q14.1	ARSB	rs337847-?	NR	7E-6				Illumina [516645]	N
1182	chr5	78272941	78272942	rs2052550	19084217	Benyamin B	2008-12-17	Am J Hum Genet	Variants in TF and HFE explain approximately 40% of genetic variation in serum-transferrin levels.	Iron status biomarkers	459 European ancestry twin pairs	NA	5q14.1	ARSB	rs2052550-?	NR	8E-6	(serum ferritin)			Illumina [315887]	N
1182	chr5	78273185	78273186	rs145129667	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	5q14.1	NR	rs145129667-?	NR	2E-6		0.0081115	[0.0048-0.0115] unit increase	Affymetrix [805426] (imputed)	N
1182	chr5	78278228	78278229	rs672413	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	5q14.1	ARSB	rs672413-A	0.3473896	4E-16	(EA, Arylsulfatase B)	0.3691	[0.28-0.46] unit increase	Affymetrix [509946]	N
1182	chr5	78278228	78278229	rs672413	25343990	Cornelis MC	2014-10-24	Hum Mol Genet	Genome-wide association study of selenium concentrations.	Blood and toenail selenium levels	9,639 European ancestry individuals	NA	5q14.1	LHFPL2, DMGDH, ARSB	rs672413-A	0.32	5E-14				Affymetrix, Illumina [2379663] (imputed)	N
1182	chr5	78291959	78291960	rs705415	25343990	Cornelis MC	2014-10-24	Hum Mol Genet	Genome-wide association study of selenium concentrations.	Blood and toenail selenium levels	9,639 European ancestry individuals	NA	5q14.1	DMGDH, ARSB	rs705415-T	0.14	5E-10				Affymetrix, Illumina [2379663] (imputed)	N
1182	chr5	78300396	78300397	rs3797535	25343990	Cornelis MC	2014-10-24	Hum Mol Genet	Genome-wide association study of selenium concentrations.	Blood and toenail selenium levels	9,639 European ancestry individuals	NA	5q14.1	DMGDH, ARSB, BHMT2	rs3797535-T	0.08	2E-15				Affymetrix, Illumina [2379663] (imputed)	N
1182	chr5	78304313	78304314	rs11951068	25343990	Cornelis MC	2014-10-24	Hum Mol Genet	Genome-wide association study of selenium concentrations.	Blood and toenail selenium levels	9,639 European ancestry individuals	NA	5q14.1	DMGDH, ARSB, BHMT2	rs11951068-A	0.07	2E-11				Affymetrix, Illumina [2379663] (imputed)	N
1182	chr5	78306691	78306692	rs11953102	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Cerebrospinal fluid t-tau levels in mild cognitive impairment	581 European ancestry cases	NA	5q14.1	DMGDH, ARSB, BHMT2	rs11953102-C	0.21	2E-7		0.44	[0.26-0.62] unit decrease	Illumina [8449920] (imputed)	N
1182	chr5	78310190	78310191	rs17223387	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5q14.1		rs17223387-?	NR	3E-10				NR [~ 8900000] (imputed)	N
1182	chr5	78310753	78310754	rs6881725	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	5q14.1		rs6881725-C	NR	1E-9		0.0116	[0.0079-0.0153] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
1182	chr5	78316475	78316476	rs921943	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q14.1	NR	rs921943-T	0.3136	9E-10	(BHMT)	1.637	NR unit increase	Illumina [1671387] (imputed)	N
1182	chr5	78316475	78316476	rs921943	25343990	Cornelis MC	2014-10-24	Hum Mol Genet	Genome-wide association study of selenium concentrations.	Blood and toenail selenium levels	9,639 European ancestry individuals	NA	5q14.1	DMGDH, ARSB, BHMT2	rs921943-T	0.29	2E-39				Affymetrix, Illumina [2379663] (imputed)	N
1182	chr5	78316475	78316476	rs921943	23720494	Evans DM	2013-05-29	Hum Mol Genet	Genome-wide association study identifies loci affecting blood copper, selenium and zinc.	Blood trace element (Se levels)	5477 European ancestry individuals	NA	5q14.1	BHMT2, BHMT, DMGDH	rs921943-T	NR	9E-28		0.246	[0.20-0.29] unit increase	Illumina [> 2500000] (imputed)	N
1182	chr5	78319637	78319638	rs6862283	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5q14.1	ARSB	rs6862283-?	NR	1E-7	(betaine)	0.19260421	[0.12-0.26] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1182	chr5	78322649	78322650	rs3797537	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	5q14.1	DMGDH	rs3797537-A	0.7284	2E-9		0.0019	[0.0013-0.0025] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
1182	chr5	78322649	78322650	rs3797537	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	5q14.1	DMGDH	rs3797537-A	0.7118	2E-10		0.0021	[0.0013-0.0029] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
1182	chr5	78324002	78324003	rs933683	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	5q14.1	DMGDH	rs933683-G	0.748217	7E-33	(dimethylglycine)	0.317	[0.26-0.37] unit increase	Illumina [13039987] (imputed)	N
1182	chr5	78326212	78326213	rs7736027	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	5q14.1	DMGDH	rs7736027-A	0.739045	6E-27	(betaine)	0.287	[0.23-0.34] unit increase	Illumina [13039987] (imputed)	N
1182	chr5	78330226	78330227	rs248386	31960908	Nag A	2020-01-21	Hum Mol Genet	Genome-wide scan identifies novel genetic loci regulating salivary metabolite levels.	Salivary metabolite levels	1,419 European ancestry individuals	1,000 European ancestry individuals	5q14.1	DMGDH	rs248386-C	0.81	1E-12	(dimethylglycine)	0.349	[0.25-0.44] unit decrease	Illumina [9600000] (imputed)	N
1182	chr5	78330226	78330227	rs248386	25569235	Demirkan A	2015-01-08	PLoS Genet	Insight in genome-wide association of metabolite quantitative traits by exome sequence analyses.	Serum metabolite levels	2,118 Erasmus Rucphen (founder/genetic isolate) individuals	NA	5q14.1	intergenic	rs248386-?	NR	2E-19	(Dimethyl-glycine)			Illumina [~ 2500000] (imputed)	N
1182	chr5	78330226	78330227	rs248386	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5q14.1	BHMT2	rs248386-?	NR	7E-33	(dimethylglycine)	0.5037517	[0.42-0.59] unit increase	Affymetrix [at least 2500000] (imputed)	N
1182	chr5	78337224	78337225	rs248381	25343990	Cornelis MC	2014-10-24	Hum Mol Genet	Genome-wide association study of selenium concentrations.	Toenail selenium levels	4,162 European ancestry individuals	NA	5q14.1	ARSB, BHMT2, DMGDH	rs248381-A	0.50	3E-13		0.025	[0.019-0.031] unit decrease	Affymetrix, Illumina [2378986] (imputed)	N
1182	chr5	78341296	78341297	rs17823642	23378610	Xie W	2013-02-01	Diabetes	Genetic variants associated with glycine metabolism and their role in insulin sensitivity and type 2 diabetes.	Metabolite levels	1,004 European ancestry individuals	339 European ancestry individuals	5q14.1	BHMT2, BHMT	rs17823642-C	0.89	2E-9	(betaine)	0.38	[0.26-0.51] unit increase	Affymetrix [909508] (imputed)	N
1182	chr5	78343972	78343972	rs74535018	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	5q14.1	DMGDH	rs74535018-C	0.950465	3E-13	(dimethylglycine)	0.396	[0.29-0.5] unit decrease	Illumina [13039987] (imputed)	N
1182	chr5	78344975	78344976	rs17823744	25343990	Cornelis MC	2014-10-24	Hum Mol Genet	Genome-wide association study of selenium concentrations.	Toenail selenium levels	4,162 European ancestry individuals	NA	5q14.1	ARSB, BHMT2, DMGDH	rs17823744-A	0.88	1E-16		0.045	[0.035-0.055] unit decrease	Affymetrix, Illumina [2378986] (imputed)	N
1182	chr5	78346768	78346769	rs16876394	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q14.1	NR	rs16876394-C	0.1063	8E-9	(BHMT)	2.302	NR unit increase	Illumina [1671387] (imputed)	N
1182	chr5	78346768	78346769	rs16876394	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	5q14.1	BHMT	rs16876394-T	0.9	1E-19	(betaine)	0.03	[0.024-0.036] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
1182	chr5	78346898	78346899	rs144264803	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	5q14.1	DMGDH	rs144264803-T	0.961671	2E-17	(dimethylglycine)	0.49	[0.38-0.6] unit decrease	Illumina [13039987] (imputed)	N
1182	chr5	78348208	78348209	rs11960388	33382417	Batai K	2020-12-31	J Nutr	Genome-Wide Association Study of Response to Selenium Supplementation and Circulating Selenium Concentrations in Adults of European Descent.	Plasma selenium concentration	1,211 European ancestry individuals	NA	5q14.1	DMGDH	rs11960388-A	0.119	9E-8		0.026	[0.016-0.036] unit increase	Illumina [7663546] (imputed)	N
1182	chr5	78352090	78352091	rs4512118	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	5q14.1	DMGDH	rs4512118-C	0.189236	2E-43	(dimethylglycine)	0.394	[0.34-0.45] unit increase	Illumina [13039987] (imputed)	N
1182	chr5	78371860	78371861	rs6453429	26352407	Raffler J	2015-09-09	PLoS Genet	Genome-Wide Association Study with Targeted and Non-targeted NMR Metabolomics Identifies 15 Novel Loci of Urinary Human Metabolic Individuality.	Urinary metabolites	3,861 European ancestry individuals	1,691European ancestry individuals	5q14.1	DMGDH	rs6453429-T	0.18	2E-28	(N,N-dimethylglycine/betaine)	0.1918	[NR] unit increase	Affymetrix [620456]	N
1182	chr5	78377662	78377663	rs62377952	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	5q14.1	BHMT2	rs62377952-C	0.985716	2E-19	(dimethylglycine)	0.889	[0.7-1.08] unit decrease	Illumina [13039987] (imputed)	N
1183	chr5	78385844	78385845	rs10944	25343990	Cornelis MC	2014-10-24	Hum Mol Genet	Genome-wide association study of selenium concentrations.	Blood and toenail selenium levels	9,639 European ancestry individuals	NA	5q14.1	BHMT2, BHMT	rs10944-T	0.49	1E-36				Affymetrix, Illumina [2379663] (imputed)	N
1183	chr5	78411323	78411324	rs7700970	25343990	Cornelis MC	2014-10-24	Hum Mol Genet	Genome-wide association study of selenium concentrations.	Toenail selenium levels	4,162 European ancestry individuals	NA	5q14.1	BHMT, BHMT2, JMY	rs7700970-T	0.3	2E-11		0.03	[0.022-0.038] unit increase	Affymetrix, Illumina [2378986] (imputed)	N
1183	chr5	78414336	78414337	rs506500	23720494	Evans DM	2013-05-29	Hum Mol Genet	Genome-wide association study identifies loci affecting blood copper, selenium and zinc.	Blood trace element (Se levels)	5477 European ancestry individuals	NA	5q14.1	BHMT2, BHMT, DMGDH	rs506500-?	NR	8E-12	(Conditioned on rs921943)			Illumina [> 2500000] (imputed)	N
1183	chr5	78416415	78416416	rs567754	25343990	Cornelis MC	2014-10-24	Hum Mol Genet	Genome-wide association study of selenium concentrations.	Toenail selenium levels	4,162 European ancestry individuals	NA	5q14.1	BHMT, BHMT2, JMY	rs567754-T	0.33	5E-6		0.018	[0.010-0.026] unit decrease	Affymetrix, Illumina [2378986] (imputed)	N
1183	chr5	78416415	78416416	rs567754	25343990	Cornelis MC	2014-10-24	Hum Mol Genet	Genome-wide association study of selenium concentrations.	Blood and toenail selenium levels	9,639 European ancestry individuals	NA	5q14.1	BHMT, BHMT2, JMY	rs567754-T	0.34	8E-20				Affymetrix, Illumina [2379663] (imputed)	N
1183	chr5	78417628	78417629	rs1644005	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	5q14.1		rs1644005-C	NR	2E-11		0.0149	[0.011-0.019] unit decrease	Affymetrix, Illumina [20529698] (imputed)	N
1183	chr5	78417955	78417956	rs57444763	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	5q14.1		rs57444763-A	NR	2E-8		0.0126	[0.0083-0.0169] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
1183	chr5	78420731	78420732	rs573372	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	5q14.1		rs573372-A	NR	2E-10		0.0129	[0.009-0.0168] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
1183	chr5	78421958	78421959	rs3733890	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	5q14.1	NR	rs3733890-A	NR	2E-9		0.0165	[0.011-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
1183	chr5	78421958	78421959	rs3733890	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	5q14.1	DMGDH	rs3733890-G	0.707326	4E-11		0.0138142	[0.0097-0.0179] unit increase	Affymetrix [NR] (imputed)	N
1183	chr5	78424153	78424154	rs478667	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	5q14.1	BHMT	rs478667-G	0.263524	7E-15	(betaine)	0.205	[0.15-0.26] unit decrease	Illumina [13039987] (imputed)	N
1183	chr5	78425187	78425188	rs558133	25343990	Cornelis MC	2014-10-24	Hum Mol Genet	Genome-wide association study of selenium concentrations.	Blood and toenail selenium levels	9,639 European ancestry individuals	NA	5q14.1	BHMT2, JMY, BHMT	rs558133-A	0.69	6E-11				Affymetrix, Illumina [2379663] (imputed)	N
1183	chr5	78429593	78429594	rs617219	26822151	Hartiala JA	2016-01-29	Nat Commun	Genome-wide association study and targeted metabolomics identifies sex-specific association of CPS1 with coronary artery disease.	Betaine levels in individuals undergoing cardiac evaluation	1,985 individuals	1,895 individuals	5q14.1	BHMT, DMGDH, BHMT2	rs617219-C	0.37	7E-13		0.059	[0.043-0.075] unit increase	Affymetrix [2421770] (imputed)	N
1183	chr5	78430606	78430607	rs1316776	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	5q14.1	DMGDH	rs1316776-C	0.6476	3E-12		1.05	[1.03-1.06]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1183	chr5	78430688	78430689	rs1962002	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	5q14.1		rs1962002-C	0.37	1E-16		8.31	z score increase	Affymetrix [9061022] (imputed)	N
1183	chr5	78432799	78432799	rs71615507	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	5q14.1		rs71615507-GTATATA	0.61445	3E-9		0.0242929	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
1183	chr5	78432799	78432799	rs71615507	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	5q14.1		rs71615507-GTATATA	0.61445	8E-12		0.0272955	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
1183	chr5	78433679	78433680	rs115525913	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	5q14.1		rs115525913-C	0.638834	1E-11		0.0277094	[0.02-0.036] unit increase	NR [11722792] (imputed)	N
1183	chr5	78433679	78433680	rs115525913	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	5q14.1		rs115525913-C	0.638834	3E-9		0.0247984	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
1183	chr5	78433679	78433680	rs115525913	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	5q14.1		rs115525913-C	0.638834	3E-9		0.0241213	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
1183	chr5	78433679	78433680	rs115525913	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	5q14.1		rs115525913-C	0.638834	5E-8		0.0230506	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
1183	chr5	78433679	78433680	rs115525913	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	5q14.1		rs115525913-C	0.638834	7E-9		0.0243493	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
1183	chr5	78433679	78433680	rs115525913	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	5q14.1		rs115525913-C	0.638834	1E-10		0.0267428	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
1183	chr5	78433679	78433680	rs115525913	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	5q14.1		rs115525913-C	0.638834	2E-9		0.0246775	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
1183	chr5	78433679	78433680	rs115525913	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	5q14.1		rs115525913-C	0.638834	2E-8		0.0233722	[0.015-0.032] unit increase	NR [11722792] (imputed)	N
1183	chr5	78433679	78433680	rs115525913	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	5q14.1		rs115525913-C	0.638834	4E-10		0.0256564	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
1183	chr5	78433679	78433680	rs115525913	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	5q14.1		rs115525913-C	0.638834	4E-8		0.0226736	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
1183	chr5	78433679	78433680	rs115525913	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	5q14.1		rs115525913-C	0.638834	4E-10		0.0253205	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
1183	chr5	78433679	78433680	rs115525913	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	5q14.1		rs115525913-C	0.638834	1E-11		0.0276428	[0.02-0.036] unit decrease	NR [11722792] (imputed)	N
1183	chr5	78433679	78433680	rs115525913	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	5q14.1		rs115525913-C	0.638834	7E-9		0.0242801	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
1183	chr5	78433679	78433680	rs115525913	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	5q14.1		rs115525913-C	0.638834	1E-9		0.0248299	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
1183	chr5	78433679	78433680	rs115525913	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	5q14.1		rs115525913-C	0.638834	2E-9		0.0244415	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
1183	chr5	78436904	78436905	rs12519500	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	5q14.1	NR	rs12519500-C	0.6537	2E-15		0.038	[0.029-0.047] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1183	chr5	78454520	78454520	rs370326364	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	5q14.1		rs370326364-C,rs370326364-C	0.668962	2E-13		0.0314565	[0.023-0.04] unit decrease	NR [11722792] (imputed)	N
1183	chr5	78454520	78454520	rs370326364	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	5q14.1		rs370326364-C,rs370326364-C	0.668962	2E-13		0.0314565	[0.023-0.04] unit decrease	NR [11722792] (imputed)	N
1183	chr5	78454520	78454520	rs370326364	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	5q14.1		rs370326364-C,rs370326364-C	0.668962	1E-9		0.0267743	[0.018-0.035] unit decrease	NR [11722792] (imputed)	N
1183	chr5	78454520	78454520	rs370326364	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	5q14.1		rs370326364-C,rs370326364-C	0.668962	1E-9		0.0267743	[0.018-0.035] unit decrease	NR [11722792] (imputed)	N
1183	chr5	78454533	78454533	rs35463881	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	5q14.1		rs35463881-CA	NR	2E-9		0.0151	[0.01-0.02] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
1183	chr5	78465308	78465308	rs150310024	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	5q14.1		rs150310024-A,rs150310024-A	0.628595	2E-8		0.0224244	[0.015-0.03] unit increase	NR [11722792] (imputed)	N
1183	chr5	78465308	78465308	rs150310024	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	5q14.1		rs150310024-A,rs150310024-A	0.628595	2E-8		0.0224244	[0.015-0.03] unit increase	NR [11722792] (imputed)	N
1183	chr5	78465308	78465308	rs150310024	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to monounsaturated fatty acids	115,006 European ancestry individuals	NA	5q14.1		rs150310024-A,rs150310024-A	0.628595	2E-8		0.0232362	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
1183	chr5	78465308	78465308	rs150310024	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to monounsaturated fatty acids	115,006 European ancestry individuals	NA	5q14.1		rs150310024-A,rs150310024-A	0.628595	2E-8		0.0232362	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
1183	chr5	78482698	78482699	rs2364832	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	5q14.1		rs2364832-C	0.246028	8E-9		0.0263803	[0.017-0.035] unit decrease	NR [11722792] (imputed)	N
1183	chr5	78482698	78482699	rs2364832	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5q14.1	BHMT	rs2364832-?	NR	7E-7	(dimethylglycine)	0.19738977	[0.12-0.28] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1183	chr5	78503744	78503744	rs35039341	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	5q14.1	DMGDH	rs35039341-?	NR	4E-9		0.0164	[0.012-0.021] unit decrease	Affymetrix [5701386] (imputed)	N
1184	chr5	78513819	78513819	rs113324949	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	5q14.1		rs113324949-AAG,rs113324949-AAG	0.35049	7E-9		0.0245903	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
1184	chr5	78513819	78513819	rs113324949	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	5q14.1		rs113324949-AAG,rs113324949-AAG	0.35049	7E-9		0.0245903	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
1184	chr5	78531336	78531337	rs1316753	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small VLDL	115,082 European ancestry individuals	NA	5q14.1		rs1316753-G	0.605117	3E-9		0.024223	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
1184	chr5	78531336	78531337	rs1316753	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small HDL	115,082 European ancestry individuals	NA	5q14.1		rs1316753-G	0.605117	3E-10		0.0257994	[0.018-0.034] unit increase	NR [11722792] (imputed)	N
1184	chr5	78531336	78531337	rs1316753	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	5q14.1		rs1316753-G	0.605138	2E-8		0.0228093	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
1184	chr5	78531336	78531337	rs1316753	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	5q14.1		rs1316753-G	0.605117	1E-9		0.0243655	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
1184	chr5	78531336	78531337	rs1316753	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	5q14.1		rs1316753-G	0.605117	6E-9		0.0233634	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
1184	chr5	78531336	78531337	rs1316753	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	5q14.1	DMGDH	rs1316753-G	0.605936	8E-13		0.0145496	[0.011-0.019] unit increase	Affymetrix [NR] (imputed)	N
1184	chr5	78532087	78532088	rs3733892	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	5q14.1	NR	rs3733892-A	0.640286	8E-16		0.0162264	[0.012-0.02] unit increase	NR [NR]	N
1184	chr5	78546292	78546293	rs2591392	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	5q14.1	NR	rs2591392-G	0.6247	2E-15		0.0306	[0.023-0.038] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1184	chr5	78549877	78549878	rs74989090	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid respiratory support vs population)	495 European ancestry cases, 680,440 European ancestry controls, 102 Hispanic or Latin American cases, 94,330 Hispanic or Latin American controls, 39 Black or African American cases, 22,410 Black or African American controls	NA	5q14.1		rs74989090-?	NR	3E-6		2.348145	[1.37-3.33] unit increase	Illumina [9842460] (imputed)	N
1184	chr5	78557204	78557205	rs2607143	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	5q14.1		rs2607143-T	0.248893	5E-8		0.0252597	[0.016-0.034] unit decrease	NR [11722792] (imputed)	N
1184	chr5	78557240	78557241	rs2591388	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	5q14.1		rs2591388-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1184	chr5	78582832	78582833	rs11959628	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5q14.1	HOMER1	rs11959628-?	NR	4E-6	(dimethylglycine)	0.17566223	[0.1-0.25] unit increase	Affymetrix [at least 2500000] (imputed)	N
1184	chr5	78597534	78597535	rs3930426	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	5q14.1		rs3930426-C	0.418017	3E-9		0.0235401	[0.016-0.031] unit decrease	NR [11722792] (imputed)	N
1184	chr5	78602471	78602472	rs7704383	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of monounsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	5q14.1		rs7704383-C	0.431115	6E-9		0.0232397	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
1184	chr5	78622166	78622167	rs11326481	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	5q14.1	JMY	rs11326481-A	0.593954	1E-11		0.016049063	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1184	chr5	78638718	78638719	rs114228467	33269293	Kannambath S	2020-10-16	Open Forum Infect Dis	Genome-Wide Association Study Identifies Novel Colony Stimulating Factor 1 Locus Conferring Susceptibility to Cryptococcosis in Human Immunodeficiency Virus-Infected South Africans.	Cryptococcosis in HIV infection	319 South African ancestry cases, 399 South African ancestry controls	NA	5q14.1	JMY, HOMER1	rs114228467-?	NR	7E-6		3.249	[NR]	Illumina [2686126] (imputed)	N
1185	chr5	78745041	78745042	rs6859667	25343990	Cornelis MC	2014-10-24	Hum Mol Genet	Genome-wide association study of selenium concentrations.	Toenail selenium levels	4,162 European ancestry individuals	NA	5q14.1	JMY, HOMER1	rs6859667-T	0.96	1E-7		0.045	[0.029-0.061] unit decrease	Affymetrix, Illumina [2378986] (imputed)	N
1185	chr5	78745041	78745042	rs6859667	25343990	Cornelis MC	2014-10-24	Hum Mol Genet	Genome-wide association study of selenium concentrations.	Blood and toenail selenium levels	9,639 European ancestry individuals	NA	5q14.1	HOMER1, JMY	rs6859667-T	0.96	4E-12				Affymetrix, Illumina [2379663] (imputed)	N
1185	chr5	78756777	78756778	rs10078095	18193045	Sanna S	2008-01-13	Nat Genet	Common variants in the GDF5-UQCC region are associated with variation in human height.	Height	1,084 European ancestry cases, 1,287 European ancestry controls, 4,298 European individuals	23,684 European ancestry individuals, 3,860 African American individuals	5q14.1	HOMER1	rs10078095-C	0.22	3E-6		0.9	[NR] cm increase	Affymetrix, Illumina [~ 2261000] (imputed)	N
1185	chr5	78761029	78761030	rs4345303	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-10 levels	7,681 Finnish ancestry individuals	NA	5q14.1	NR	rs4345303-C		5E-6		0.0839	[0.048-0.12] SD units increase	NR [10700000] (imputed)	N
1186	chr5	78787248	78787249	rs57027572	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Lateral ventricle temporal horn volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	5q14.1	HOMER1	rs57027572-?		2E-6				Illumina [4322238] (imputed)	N
1186	chr5	78829248	78829249	rs7713917	20673876	Rietschel M	2010-07-29	Biol Psychiatry	Genome-wide association-, replication-, and neuroimaging study implicates HOMER1 in the etiology of major depression.	Major depressive disorder	597 European ancestry cases, 1,295 European ancestry controls	409 European ancestry cases, 541 European ancestry controls	5q14.1	HOMER1	rs7713917-G	0.60	1E-6		1.33	[1.19-1.49]	Illumina [491238]	N
1186	chr5	78840609	78840610	rs7707252	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Bipolar disorder vs ADHD (ordinary least squares (OLS))	20,352 bipolar disorder cases, 19,099 ADHD cases	NA	5q14.1		rs7707252-?	NR	2E-8		0.0198	NR unit increase	NR [5637374] (imputed)	N
1186	chr5	78840609	78840610	rs7707252	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	5q14.1	HOMER1	rs7707252-G	0.275	5E-6		1.0581226		NR [9372253] (imputed)	N
1186	chr5	78845630	78845631	rs6899277	27296613	Salinas YD	2016-06-13	BMC Genet	Multiethnic genome-wide association study identifies ethnic-specific associations with body mass index in Hispanics and African Americans.	Body mass index	1,235 Hispanic individuals, 706 Asian ancestry individuals, 1,549 African American individuals, 2,395 European ancestry individuals	3,379 Hispanic individuals, 6,871 African American individuals	5q14.1	NR	rs6899277-G		2E-6	(European)	0.7	[0.41-0.99] kg/m2 decrease	Affymetrix [up to 871948]	N
1186	chr5	78845710	78845711	rs13358260	21700879	Qi L	2011-06-23	Diabetes	Novel locus FER is associated with serum HMW adiponectin levels.	Adiponectin levels	1,591 European ancestry female individuals	626 European ancestry individuals from 235 families	5q14.1	PAPD4	rs13358260-C	0.93	5E-6				Affymetrix [2543887] (imputed)	N
1186	chr5	78848356	78848357	rs11744542	34002096	Mullins N	2021-05-17	Nat Genet	Genome-wide association study of more than 40,000 bipolar disorder cases provides new insights into the underlying biology.	Bipolar I disorder	25,060 European ancestry cases, 449,978 European ancestry controls	NA	5q14.1	NR	rs11744542-G	0.723	7E-9		0.92886	[0.9-0.95]	Affymetrix, Illumina [7549318] (imputed)	N
1186	chr5	78849504	78849505	rs6865469	34002096	Mullins N	2021-05-17	Nat Genet	Genome-wide association study of more than 40,000 bipolar disorder cases provides new insights into the underlying biology.	Bipolar disorder	41,917 European ancestry cases, 371,549 European ancestry controls	NA	5q14.1	HOMER1	rs6865469-G	0.726	2E-8		0.94346	[0.92-0.96]	Affymetrix, Illumina [7549318] (imputed)	N
1187	chr5	78925742	78925743	rs62365174	32109421	Li C	2020-02-20	Am J Hum Genet	Genome-Wide Association Analysis in Humans Links Nucleotide Metabolism to Leukocyte Telomere Length.	Leukocyte telomere length	78,592 European ancestry individuals	NA	5q14.1	TENT2	rs62365174-G	0.088151	2E-6		0.05439	[0.032-0.077] unit decrease	Affymetrix, Illumina, Perlegen [up to 30071938] (imputed)	N
1187	chr5	78933643	78933644	rs72768807	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	5q14.1	PAPD4	rs72768807-A	0.084	3E-6		0.02	NR unit decrease	Illumina [NR] (imputed)	N
1187	chr5	78939906	78939907	rs114878198	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	5q14.1	PAPD4	rs114878198-A	0.085	3E-6		0.02	NR unit decrease	Illumina [NR] (imputed)	N
1187	chr5	78943647	78943648	rs6859704	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	5q14.1	NR	rs6859704-C	0.0769240376391982	8E-6	(IGP29)	0.2598	[0.15-0.37] unit decrease	Illumina [~ 2500000] (imputed)	N
1187	chr5	78944370	78944371	rs72768817	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	5q14.1	PAPD4	rs72768817-C	0.085	3E-6		0.02	NR unit decrease	Illumina [NR] (imputed)	N
1187	chr5	78945170	78945171	rs7712162	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5q14.1		rs7712162-?	NR	3E-19				NR [~ 8900000] (imputed)	N
1187	chr5	78946214	78946215	rs55687040	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	5q14.1	PAPD4	rs55687040-C	0.915	3E-6		0.02	NR unit increase	Illumina [NR] (imputed)	N
1187	chr5	78954838	78954839	rs72768824	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	5q14.1	PAPD4	rs72768824-T	0.083	2E-6		0.02	NR unit decrease	Illumina [NR] (imputed)	N
1187	chr5	78956071	78956072	rs72768826	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	5q14.1	PAPD4	rs72768826-A	0.917	2E-6		0.02	NR unit increase	Illumina [NR] (imputed)	N
1187	chr5	78957985	78957986	rs60449834	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	5q14.1	PAPD4	rs60449834-A	0.085	3E-6		0.02	NR unit decrease	Illumina [NR] (imputed)	N
1187	chr5	78961891	78961892	rs61212610	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	5q14.1	PAPD4	rs61212610-A	0.917	2E-6		0.02	NR unit increase	Illumina [NR] (imputed)	N
1187	chr5	78963322	78963323	rs12657392	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	5q14.1	PAPD4	rs12657392-A	0.463	2E-6		0.02	NR unit decrease	Illumina [NR] (imputed)	N
1187	chr5	78968606	78968607	rs72768835	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	5q14.1	PAPD4	rs72768835-T	0.916	2E-6		0.02	NR unit increase	Illumina [NR] (imputed)	N
1187	chr5	78974465	78974466	rs72768842	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	5q14.1	PAPD4	rs72768842-T	0.083	2E-6		0.02	NR unit decrease	Illumina [NR] (imputed)	N
1187	chr5	78974907	78974908	rs56064438	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	5q14.1	PAPD4	rs56064438-T	0.917	2E-6		0.02	NR unit increase	Illumina [NR] (imputed)	N
1187	chr5	78977240	78977241	rs113902152	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	5q14.1	PAPD4	rs113902152-A	0.917	2E-6		0.02	NR unit increase	Illumina [NR] (imputed)	N
1187	chr5	79029310	79029311	rs74935252	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	5q14.1	intergenic	rs74935252-A	0.001	1E-6		34.03	[3.52-329.29]	Illumina [1556551]	N
1188	chr5	79086882	79086883	rs1129770	31790847	Hou R	2019-11-29	Bone	Genetic variants affecting bone mineral density and bone mineral content at multiple skeletal sites in Hispanic children.	Bone mineral content	1,030 Hispanic or Latin American children	NA	5q14.1	CMYA5	rs1129770-A	0.09	8E-6	(right arm)	0.36	[0.2-0.52] g increase	Illumina [> 1100000]	N
1188	chr5	79086882	79086883	rs1129770	31790847	Hou R	2019-11-29	Bone	Genetic variants affecting bone mineral density and bone mineral content at multiple skeletal sites in Hispanic children.	Bone mineral content	1,030 Hispanic or Latin American children	NA	5q14.1	CMYA5	rs1129770-A	0.09	5E-6	(left arm)	0.37	[0.21-0.53] g increase	Illumina [> 1100000]	N
1188	chr5	79098997	79098998	rs259067	23818313	Kim HJ	2012-11-06	Obesity (Silver Spring)	Combined linkage and association analyses identify a novel locus for obesity near PROX1 in Asians.	Obesity	756 Mongolian ancestry individuals from 55 families	1,301 Korean ancestry individuals	5q14.1	CMYA5	rs259067-A	0.47	1E-6	(BMI)			Illumina [567072]	N
1188	chr5	79099463	79099464	rs7735699	20889312	Wang KS	2010-10-01	Schizophr Res	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	5q14.1	NR	rs7735699-?	NR	6E-6		1.2285	[NR]	Affymetrix [722112]	N
1188	chr5	79108475	79108476	rs13185886	34684477	Fujihara K	2021-09-30	Nutrients	Carrot Consumption Frequency Associated with Reduced BMI and Obesity through the SNP Intermediary rs4445711.	body mass index x broccoli consumption interaction	6,495 Japanese ancestry males, 5,730 Japanese ancestry females	NA	5q14.1		rs13185886-C	NR	7E-6		0.216	[0.12-0.31] unit increase	Illumina [285387]	N
1188	chr5	79135152	79135153	rs13354102	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Alanine aminotransferase levels in excessive alcohol consumption	951 individuals	NA	5q14.1	NR	rs13354102-?	NR	3E-6		0.0171	[0.0098-0.0244] unit increase	Illumina [~ 7800000] (imputed)	N
1188	chr5	79139143	79139144	rs16877254	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	5q14.1	NR	rs16877254-?	NR	6E-6				Affymetrix [NR]	N
1188	chr5	79143193	79143194	rs10079417	25343990	Cornelis MC	2014-10-24	Hum Mol Genet	Genome-wide association study of selenium concentrations.	Toenail selenium levels	4,162 European ancestry individuals	NA	5q14.1	CMYA5	rs10079417-T	0.23	6E-6		0.018	[0.010-0.026] unit increase	Affymetrix, Illumina [2378986] (imputed)	N
1189	chr5	79174829	79174830	rs77190514	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Alcohol consumption x experiences in childhood (felt loved by family member) interaction	41,648 European ancestry individuals	NA	5q14.1		rs77190514-?	NR	2E-8		1.0304	[0.67-1.39] unit decrease	Affymetrix [NR] (imputed)	N
1189	chr5	79180125	79180126	rs171941	29975729	Kim TH	2018-07-05	PLoS One	Identification of novel susceptibility loci associated with hepatitis B surface antigen seroclearance in chronic hepatitis B.	Hepatitis B surface antigen seroclearance in chronic hepatitis B infection	100 Korean ancestry cases, 100 Korean ancestry controls	NA	5q14.1	CMYA5, MTX3	rs171941-A	0.19	4E-6		3.69	[2.13-6.42]	Illumina [1365088]	N
1189	chr5	79185937	79185938	rs12521798	28317148	Campo C	2017-01-01	Hematol Oncol	Bortezomib-induced peripheral neuropathy: A genome-wide association study on multiple myeloma patients.	Bortezomib-induced peripheral neuropathy in multiple myeloma	102 European ancestry cases and 544 European ancestry controls.	NR	5q14.1	RP11-168A11.1	rs12521798-A	NR	4E-6		2.76	[1.73-4.38]	Illumina [NR] (imputed)	N
1189	chr5	79211629	79211630	rs10474599	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Varicose veins	22,037 European ancestry cases, 437,665 European ancestry controls, 474 East Asian ancestry cases, 178,252 East Asian ancestry controls	NA	5q14.1		rs10474599-C	NR	5E-10		0.0669	[0.046-0.088] unit decrease	Affymetrix, Illumina [25842955] (imputed)	N
1189	chr5	79229645	79229646	rs6867021	29947131	Smit DJA	2018-06-26	Hum Brain Mapp	Genome-wide association analysis links multiple psychiatric liability genes to oscillatory brain activity.	Electroencephalogram traits	up to 8,425 European and unknown ancestry individuals	NA	5q14.1	NR	rs6867021-?	NR	1E-7	(deltaCz)	5.317	z score decrease	Affymetrix, Illumina, Perlegen [at least 4959085] (imputed)	N
1189	chr5	79232287	79232288	rs112632626	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q14.1	NR	rs112632626-C	0.01045	7E-13	(COL18A1)	0.2072	NR unit decrease	Illumina [1671387] (imputed)	N
1190	chr5	79303632	79303633	rs2451932	26112879	Rudkowska I	2015-06-20	J Nutrigenet Nutrigenomics	Interaction between Common Genetic Variants and Total Fat Intake on Low-Density Lipoprotein Peak Particle Diameter: A Genome-Wide Association Study.	LDL peak particle diameter (total fat intake interaction)	541 European ancestry individuals	NA	5q14.1	intergenic	rs2451932-G	0.493480555555556	2E-6		0.034925025	[0.02-0.049] unit increase	Illumina [1632371] (imputed)	N
1190	chr5	79308314	79308315	rs2028269	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	5q14.1		rs2028269-G	0.593	5E-11		0.008	[0.006-0.01] unit decrease	NR [NR] (imputed)	N
1190	chr5	79308314	79308315	rs2028269	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	5q14.1	NR	rs2028269-A	0.399	8E-11		0.00714901	[0.005-0.0093] unit increase	NR [9732723] (imputed)	N
1190	chr5	79308314	79308315	rs2028269	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	5q14.1	NR	rs2028269-A	0.399	5E-10	(Conditioned on chr5:80263865)	0.016164549	[0.011-0.021] unit increase	NR [~ 10000000] (imputed)	N
1190	chr5	79351139	79351140	rs368287	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	5q14.1	THBS4	rs368287-G	0.4919	4E-11		0.0927	[0.065-0.12] unit increase	Affymetrix [~ 11900000] (imputed)	N
1190	chr5	79351859	79351860	rs447875	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	5q14.1	THBS4	rs447875-G	0.4927	5E-11		0.092	[0.065-0.119] unit increase	Affymetrix [~ 11900000] (imputed)	N
1190	chr5	79360174	79360175	rs13180294	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	35,422 individuals (>=25 years old)	NA	5q14.1		rs13180294-A	NR	1E-7		0.024	[0.016-0.032] mm decrease	Affymetrix, Illumina [8936601] (imputed)	N
1190	chr5	79360174	79360175	rs13180294	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	29,580 European ancestry individuals, 14,462 Asian ancestry individuals	88,218 European ancestry individuals	5q14.1		rs13180294-A	0.1	2E-22		0.015	mm decrease	Affymetrix, Illumina [8936601] (imputed)	N
1190	chr5	79360174	79360175	rs13180294	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	29,580 European ancestry individuals	NA	5q14.1		rs13180294-A	0.08	1E-10		0.028	mm decrease	Affymetrix, Illumina [8936601] (imputed)	N
1190	chr5	79366248	79366249	rs256438	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	5q14.1	MTX3, THBS4	rs256438-?		1E-12				Affymetrix, Illumina [NR] (imputed)	N
1190	chr5	79366248	79366249	rs256438	25436638	Malinowski JR	2014-12-01	PLoS One	Genetic variants associated with serum thyroid stimulating hormone (TSH) levels in European Americans and African Americans from the eMERGE Network.	Serum thyroid-stimulating hormone levels	4,501 European ancestry individuals, 351 African American individuals	NA	5q14.1	THBS4	rs256438-C	0.36	6E-6	(EA)	0.05	[0.03-0.07] unit increase	Illumina [up to 905285]	N
1190	chr5	79384056	79384057	rs199766240	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs199766240-A	0.829853	2E-14		0.0918469	[0.068-0.116] increase	Affymetrix [11014269] (imputed)	N
1190	chr5	79390221	79390222	rs35351529	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein THBS4	5,363 Icelandic ancestry individuals	NA	5q14.1		rs35351529-C	0.07664	4E-17		0.288684	[0.22-0.36] unit increase	Illumina [7506463] (imputed)	N
1190	chr5	79390221	79390222	rs35351529	32528159	Choquet H	2020-06-11	Commun Biol	A multiethnic genome-wide analysis of 44,039 individuals identifies 41 new loci associated with central corneal thickness.	Central corneal thickness	32,292 European ancestry individuals, 9,623 East Asian ancestry individuals, 1,367 Hispanic/Latino individuals, 757 African American  individuals	NA	5q14.1	THBS4	rs35351529-?	NA	3E-8		2.43	[1.57-3.29] unit increase	Affymetrix [5541230] (imputed)	N
1190	chr5	79390221	79390222	rs35351529	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	5q14.1	THBS4	rs35351529-T	0.9228125	2E-11	(THBS4, 3340_53_1)	0.29791716	[0.21-0.38] unit decrease	Illumina [> 1000000] (imputed)	N
1191	chr5	79446903	79446904	rs73772260	23979607	Lubke GH	2013-08-27	Mol Psychiatry	Genome-wide analyses of borderline personality features.	Borderline personality disorder features	up to 7,125 individuals	1,301 individuals	5q14.1	SERINC5	rs73772260-?	NR	4E-7		1.73	[-0.05589-3.51589] unit decrease	Affymetrix, Illumina [6670475]	N
1191	chr5	79474317	79474318	rs11953891	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	5q14.1		rs11953891-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1191	chr5	79480619	79480620	rs4704624	28371326	Zhu Y	2017-03-30	J Cell Mol Med	Susceptibility loci for metabolic syndrome and metabolic components identified in Han Chinese: a multi-stage genome-wide association study.	Fasting blood glucose	862 Han Chinese ancestry cases, 880 Han Chinese ancestry controls	656 Han Chinese ancestry cases, 933 Han Chinese ancestry controls	5q14.1	SERINC5	rs4704624-A	0.18	7E-6		0.21	[0.12-0.31] mmol/L increase	Illumina [4642479] (imputed)	N
1191	chr5	79494626	79494627	rs74971003	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	5q14.1	NR	rs74971003-?	NR	9E-6		4.433	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1191	chr5	79535199	79535200	rs111876221	28762467	Wadelius M	2017-08-01	Clin Pharmacol Ther	Sulfasalazine-Induced Agranulocytosis Is Associated With the Human Leukocyte Antigen Locus.	Sulfasalazine-induced agranulocytosis	36 European ancestry cases, 5,170 European ancestry untreated controls	NA	5q14.1	SERINC5	rs111876221-?	NR	7E-7		8.71	[3.70-20.52]	Illumina [9380034] (imputed)	N
1191	chr5	79535199	79535200	rs111876221	28762467	Wadelius M	2017-08-01	Clin Pharmacol Ther	Sulfasalazine-Induced Agranulocytosis Is Associated With the Human Leukocyte Antigen Locus.	Sulfasalazine-induced agranulocytosis	36 European ancestry cases, 5,170 European ancestry untreated controls	NA	5q14.1	SERINC5	rs111876221-?	NR	3E-8	(conditioned on rs9266634)	12.65	[5.15-31.1]	Illumina [9380034] (imputed)	N
1191	chr5	79556876	79556877	rs56850090	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5q14.1		rs56850090-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1192	chr5	79578796	79578797	rs2173676	31888951	Schlauch KA	2019-12-30	G3 (Bethesda)	A Comprehensive Genome-Wide and Phenome-Wide Examination of BMI and Obesity in a Northern Nevadan Cohort.	Obesity (extreme)	984 cases, 2,012 controls	NA	5q14.1	intergenic	rs2173676-T	0.7348	5E-6		1.3453517	[1.22-1.47]	Illumina [500508]	N
1192	chr5	79581767	79581768	rs71636213	25778476	Jun G	2015-03-17	Mol Psychiatry	A novel Alzheimer disease locus located near the gene encoding tau protein.	Alzheimer's disease in APOE e4- carriers	7,184 cases, 26,968 controls	718 European ancestry cases, 1,699 European ancestry controls	5q14.1	SERINC5, KRT18P45	rs71636213-G	0.1	9E-6		1.18	[1.10-1.27]	NR [NR]	N
1192	chr5	79616058	79616059	rs56226654	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	5q14.1	NR	rs56226654-A	NR	5E-6	(male)	0.4138	[0.24-0.59] unit decrease	Illumina [11133794] (imputed)	N
1192	chr5	79638672	79638673	rs140713122	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	5q14.1	NR	rs140713122-?	NR	9E-10				Illumina [7760689] (imputed)	N
1192	chr5	79657118	79657118	rs10637618	34586716	Chen J	2021-09-29	Mol Genet Genomic Med	Heritability and genome-wide association study of blood pressure in Chinese adult twins.	Diastolic blood pressure	137 Chinese ancestry twins	NA	5q14.1		rs10637618-?	NR	5E-6				Illumina [7401356] (imputed)	N
1193	chr5	79693678	79693679	rs2547497	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	5q14.1		rs2547497-?	NR	2E-19				NR [~ 8900000] (imputed)	N
1193	chr5	79695369	79695370	rs259035	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	5q14.1	ZFYVE16	rs259035-?	NR	1E-8		1.0826026	NR	Affymetrix [9154080] (imputed)	N
1193	chr5	79745468	79745469	rs249038	25854761	Zuo X	2015-04-09	Nat Commun	Whole-exome SNP array identifies 15 new susceptibility loci for psoriasis.	Psoriasis	11,245 Han Chinese ancestry cases, 11,177 Han Chinese ancestry controls	6,369 Han Chinese ancestry cases, 13,969 Han Chinese ancestry controls	5q14.1	ZFYVE16	rs249038-?		2E-8		1.1904762	[1.12-1.27]	Illumina [87827]	N
1194	chr5	79834286	79834287	rs145768835	26420894	Wuttke M	2015-09-28	Nephrol Dial Transplant	Genetic loci associated with renal function measures and chronic kidney disease in children: the Pediatric Investigation for Genetic Factors Linked with Renal Progression Consortium.	Proteinuria in chronic kidney disease	up to 744 European ancestry child cases, up to 397 Turkish ancestry child cases	NA	5q14.1	FAM151B	rs145768835-?	0.82	7E-6		1.82	[1.41-2.38]	Illumina [~ 8300000] (imputed)	N
1194	chr5	79863455	79863456	rs66907226	32372009	de Las Fuentes L	2020-05-05	Mol Psychiatry	Gene-educational attainment interactions in a multi-ancestry genome-wide meta-analysis identify novel blood pressure loci.	Systolic blood pressure x educational attainment (some college) interaction (2df)	27,617 European ancestry individuals with some college education, 20,253 European ancestry individuals without college education, 8,128 African ancestry individuals with some college education, 8,537 African ancestry individuals without college education, 1,138 Asian ancestry individuals with some college education, 10,214 Asian ancestry individuals without college education, 1,869 Hispanic/Latin American individuals with some college education, 3,276 Hispanic/Latin American individuals without college education	131,584 European ancestry individuals with some college education, 110,940 European ancestry individuals without college education, 1,494 African ancestry individuals with some college education, 5,704 African ancestry individuals without college education, 2,339 Asian ancestry individuals with some college education, 8,567 Asian ancestry individuals without college education, 4,133 Hispanic individuals with some college education, 7,498 Hispanic individuals without college education	5q14.1	ANKRD34B	rs66907226-?	0.58	4E-8	(EA)	0.04	[-0.3128-0.3928] unit increase	Affymetrix, Illumina [~ 18800000] (imputed)	N
1194	chr5	79899921	79899922	rs2115014	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5q14.1		rs2115014-?	NR	2E-12				NR [~ 8900000] (imputed)	N
1194	chr5	79912043	79912044	rs836788	26831199	Pattaro C	2016-01-21	Nat Commun	Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function.	Glomerular filtration rate (creatinine)	133,413 European ancestry individuals	42,166 European ancestry individuals, up to 16,471 African ancestry individuals, up to 42,296 Asian ancestry individuals	5q14.1	DHFR	rs836788-T	0.35	1E-7	(EA)	0.0043	[0.0027-0.0059] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1194	chr5	79915019	79915020	rs1232027	28642124	Hensman Moss DJ	2017-06-20	Lancet Neurol	Identification of genetic variants associated with Huntington's disease progression: a genome-wide association study.	Huntington's disease progression	1,989 European and unknown ancestry mutation carriers	NA	5q14.1	DHFR, MSH3, MTRNR2L2	rs1232027-?	NR	1E-10				Illumina [9650000] (imputed)	N
1194	chr5	79920072	79920073	rs12517451	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	5q14.1	NR	rs12517451-T	0.2418	1E-8				NR [9056863] (imputed)	N
1194	chr5	79933092	79933093	rs245100	32963231	Hofer E	2020-09-22	Nat Commun	Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.	Cortical thickness	22,163 European and African American ancestry individuals	22,363 European ancestry individuals	5q14.1	DHFR	rs245100-?		1E-15	(Lateral occipital)			Affymetrix, Illumina [NR] (imputed)	N
1194	chr5	79933092	79933093	rs245100	32157568	Strupp M	2020-03-10	Cerebellum	A Variation in FGF14 Is Associated with Downbeat Nystagmus in a Genome-Wide Association Study.	Idiopathic downbeat nystagmus	106 European ancestry cases, 2,609 European ancestry controls	NA	5q14.1	DHFR	rs245100-G	0.253	5E-7		2.2222223	[1.64-3.12]	Illumina [7759885] (imputed)	N
1194	chr5	79947430	79947431	rs863216	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	5q14.1		rs863216-G	0.25	7E-10		6.16	z score increase	Affymetrix [9061022] (imputed)	N
1194	chr5	79947430	79947431	rs863216	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	5q14.1	NR	rs863216-G	0.2413	1E-17				NR [9056863] (imputed)	N
1194	chr5	79947430	79947431	rs863216	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical thickness (MOSTest)	26,502 European ancestry individuals	NA	5q14.1	PEAR1, LRRC71, ARHGEF11, ETV3L	rs863216-?		2E-10				NR [7428630] (imputed)	N
1194	chr5	79947430	79947431	rs863216	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	5q14.1	DHFR, MTRNR2L2, MSH3	rs863216-?		4E-15				NR [7428630] (imputed)	N
1194	chr5	79950780	79950781	rs1650697	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	5q14.1		rs1650697-A	0.24	1E-27		10.88	z score increase	Affymetrix [9061022] (imputed)	N
1194	chr5	79950780	79950781	rs1650697	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	5q14.1	NR	rs1650697-?	NR	8E-6		0.0077569	[0.0043-0.0112] unit decrease	Affymetrix [805426] (imputed)	N
1195	chr5	80001169	80001170	rs7709909	28736931	Rotroff DM	2017-07-24	Clin Pharmacol Ther	Genetic Variants in HSD17B3, SMAD3, and IPO11 Impact Circulating Lipids in Response to Fenofibrate in Individuals With Type 2 Diabetes.	HDL cholesterol change in response to fenofibrate in statin-treated type 2 diabetes	781 European ancestry individuals, 138 African American ancestry individuals, 345 unknown ancestry individuals		5q14.1	MSH3	rs7709909-?	NR	1E-8	(AA)	0.045	unit decrease	Affymetrix, Illumina [8129838] (imputed)	N
1195	chr5	80012734	80012735	rs78621558	28642124	Hensman Moss DJ	2017-06-20	Lancet Neurol	Identification of genetic variants associated with Huntington's disease progression: a genome-wide association study.	Huntington's disease progression	1,989 European and unknown ancestry mutation carriers	NA	5q14.1	MSH3	rs78621558-?	NR	4E-6				Illumina [9650000] (imputed)	N
1195	chr5	80025282	80025283	rs245333	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	5q14.1		rs245333-G	NR	2E-9		0.009	[0.0061-0.0119] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1196	chr5	80103663	80103664	rs6151874	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Blautia hansenii abundance in stool	5,959 Finnish ancestry individuals	NA	5q14.1		rs6151874-C	0.0131137	4E-8		0.224717	[0.14-0.3] unit increase	Illumina [7980478] (imputed)	N
1196	chr5	80104693	80104694	rs190085132	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Rheumatic fever	1,115 European ancestry cases, 88,076 European ancestry controls	NA	5q14.1	NR	rs190085132-?	NR	4E-6		0.3442	[0.19-0.5] unit decrease	Illumina [at least 560000] (imputed)	N
1196	chr5	80171133	80171134	rs33003	32157568	Strupp M	2020-03-10	Cerebellum	A Variation in FGF14 Is Associated with Downbeat Nystagmus in a Genome-Wide Association Study.	Idiopathic downbeat nystagmus	106 European ancestry cases, 2,609 European ancestry controls	NA	5q14.1	MSH3	rs33003-G	0.655	4E-6		2.564103	[1.72-3.85]	Illumina [7759885] (imputed)	N
1196	chr5	80201283	80201284	rs6864713	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	5q14.1	RASGRF2	rs6864713-A	0.169	2E-9		0.0094	[0.0063-0.0125] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
1197	chr5	80248499	80248500	rs12520354	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	5q14.1	RASGRF2	rs12520354-A	0.256	3E-17		0.0114	[0.0087-0.0141] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
1197	chr5	80248499	80248500	rs12520354	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	5q14.1	RASGRF2	rs12520354-A	0.2613	1E-14		0.017090015	[0.013-0.021] unit increase	Illumina [9339358] (imputed)	N
1197	chr5	80256338	80256339	rs73123076	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	5q14.1		rs73123076-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1197	chr5	80263402	80263403	rs13357015	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	5q14.1		rs13357015-G	0.369	9E-14		0.009	[0.007-0.011] unit decrease	NR [NR] (imputed)	N
1197	chr5	80263402	80263403	rs13357015	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking initiation (ever regular vs never regular)	up to 433,216 European ancestry individuals	NA	5q14.1	RASGRF2	rs13357015-A	0.635	4E-8		0.0131	[0.0085-0.0177] unit increase	Illumina [~ 250000] (imputed)	N
1197	chr5	80263402	80263403	rs13357015	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	5q14.1	RASGRF2	rs13357015-A	0.6361	2E-9		0.013587899	[0.0092-0.018] unit increase	Affymetrix [11514654] (imputed)	N
1197	chr5	80263402	80263403	rs13357015	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	5q14.1	RASGRF2	rs13357015-A	0.6364	5E-9		0.01568601	[0.01-0.021] unit increase	Affymetrix [~ 11515000] (imputed)	N
1197	chr5	80263402	80263403	rs13357015	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	5q14.1	NR	rs13357015-A	0.645	1E-13		0.00836871	[0.0062-0.0106] unit increase	NR [9732723] (imputed)	N
1197	chr5	80263402	80263403	rs13357015	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	5q14.1	NR	rs13357015-A	0.645	3E-9		0.00818496	[0.0055-0.0109] unit increase	NR [~ 9732723] (imputed)	N
1197	chr5	80263864	80263865	rs6874731	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	5q14.1	NR	rs6874731-G	0.484	2E-9		0.015317916	[0.01-0.02] unit increase	NR [~ 10000000] (imputed)	N
1197	chr5	80273898	80273899	rs6880635	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 1, breadth of lateral portion of upper face)	2,187 European ancestry individuals	NA	5q14.1	NR	rs6880635-T	0.006648	4E-6		0.8464	[0.49-1.21] unit decrease	Illumina [10677593] (imputed)	N
1197	chr5	80278714	80278715	rs10063881	34274964	Duijvenboden S	2021-07-19	Hum Mol Genet	Genomic and pleiotropic analyses of resting QT interval identifies novel loci and overlap with atrial electrical disorders.	QT interval	24,495 European ancestry men	NA	5q14.1		rs10063881-A	0.91	3E-8		0.059	[0.037-0.081] unit increase	Affymetrix [NR]	N
1197	chr5	80281743	80281743	rs147399060	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	5q14.1		rs147399060-?	NR	1E-41		0.0304938	[0.026-0.035] unit decrease	Affymetrix [20259828] (imputed)	N
1197	chr5	80282961	80282962	rs2052480	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	5q14.1	RASGRF2	rs2052480-G	0.715621	2E-39		0.0269499	[0.023-0.031] unit decrease	NR [13737936] (imputed)	N
1197	chr5	80282961	80282962	rs2052480	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	5q14.1		rs2052480-?	NR	4E-39				NR [~ 8900000] (imputed)	N
1197	chr5	80286818	80286819	rs559181	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	5q14.1		rs559181-?	NR	1E-21		0.0196752	[0.016-0.024] unit increase	Affymetrix [20259828] (imputed)	N
1197	chr5	80286818	80286819	rs559181	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	5q14.1	RASGRF2	rs559181-A	0.519013	8E-14		0.0250959	[0.018-0.032] unit increase	NR [17166351] (imputed)	N
1197	chr5	80286818	80286819	rs559181	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	5q14.1	RASGRF2	rs559181-A	0.517723	8E-11	(men)	0.0326959	[0.023-0.043] unit increase	NR [17166351] (imputed)	N
1197	chr5	80296486	80296487	rs701394	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	5q14.1	NR	rs701394-G	0.3624	7E-9		1.0362694	[1.02-1.05]	Affymetrix, Illumina [NR] (imputed)	N
1197	chr5	80307874	80307875	rs504365	31220337	Carr DF	2019-06-20	Clin Pharmacol Ther	Genome-wide association study of statin-induced myopathy in patients recruited using the UK clinical practice research datalink.	Statin-induced myopathy (severe)	32 European ancestry cases, 2,501 controls	NA	5q14.1	RASGRF2	rs504365-?	NR	3E-6		1.25	[2.27-14.29]	Illumina [654642] (imputed)	N
1197	chr5	80337456	80337457	rs520865	25335168	Hashimoto R	2014-10-21	Transl Psychiatry	Common variants at 1p36 are associated with superior frontal gyrus volume.	Superior frontal gyrus grey matter volume	158 Japanese ancestry schizophrenia cases, 378 Japanese ancestry healthy controls	NA	5q14.1	RASGRF2	rs520865-A	0.37	4E-6	(Right superior frontal gyrus)	770.6	[NR] unit increase	Affymetrix [517946]	N
1198	chr5	80355623	80355624	rs191780	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	5q14.1	RASGRF2	rs191780-C	0.8422	6E-9		0.015472365	[0.01-0.021] unit decrease	Illumina [9339358] (imputed)	N
1198	chr5	80356069	80356070	rs190585232	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (CGI-S score)	1,390 European ancestry cases	NA	5q14.1		rs190585232-C	NR	6E-6	(GLM)	0.5843	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
1198	chr5	80360611	80360612	rs26899	29781551	Guo X	2018-05-21	Genet Epidemiol	A univariate perspective of multivariate genome-wide association analysis.	Axial length or spherical error (univariate decomposition analysis)	1,055 individuals	NA	5q14.1	NR	rs26899-?	NR	2E-6				NR [500025]	N
1198	chr5	80361697	80361698	rs26902	29781551	Guo X	2018-05-21	Genet Epidemiol	A univariate perspective of multivariate genome-wide association analysis.	Axial length or spherical error (univariate decomposition analysis)	1,055 individuals	NA	5q14.1	NR	rs26902-?	NR	3E-6				NR [500025]	N
1198	chr5	80368762	80368763	rs17211233	30552317	Guo W	2018-12-14	Transl Psychiatry	Exploratory genome-wide association analysis of response to ketamine and a polygenic analysis of response to scopolamine in depression.	Response to ketamine in bipolar disorder or major depression (dissociation effects)	90 European ancestry individuals	NA	5q14.1	RASGRF2	rs17211233-T	0.939	2E-7		26.9757	[17.75-36.2] unit decrease	Illumina [~ 6000000] (imputed)	N
1198	chr5	80406565	80406566	rs138206701	23568457	Wade TD	2013-04-09	Int J Eat Disord	Genetic variants associated with disordered eating.	Eating disorders (purging via substances)	600 European ancestry female cases, 1,921 European ancestry female controls	NA	5q14.1	RASGRF2	rs138206701-A	0.98	1E-7		0.327	[0.21-0.45] unit decrease	Illumina [6150213] (imputed)	N
1198	chr5	80406565	80406566	rs138206701	23568457	Wade TD	2013-04-09	Int J Eat Disord	Genetic variants associated with disordered eating.	Eating disorders	543 European ancestry female cases, 1,116 European ancestry female controls	NA	5q14.1	RASGRF2	rs138206701-A	0.98	4E-6		0.425	[0.24-0.61] unit decrease	Illumina [6150213] (imputed)	N
1198	chr5	80411220	80411221	rs4703822	22419666	Shi M	2012-03-14	Am J Med Genet A	Genome wide study of maternal and parent-of-origin effects on the etiology of orofacial clefts.	Orofacial clefts	1,094 European ancestry triads, 1,277 Asian ancestry triads, 87 triads	NA	5q14.1	RASGRF2	rs4703822-?	0.72	4E-6	(CP)	1.59	[1.3-1.92]	Illumina [NR]	N
1198	chr5	80424826	80424827	rs149449575	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	5q14.1	RASGRF2	rs149449575-G	NR	4E-6	(men)	0.839793	[0.48-1.2] unit decrease	Illumina [13520550] (imputed)	N
1199	chr5	80483573	80483574	rs716897	29942513	Penney ME	2018-06-13	Biomark Res	Associations of single nucleotide polymorphisms with mucinous colorectal cancer: genome-wide common variant and gene-based rare variant analyses.	Mucinous adenocarcinoma in colorectal cancer	57 European ancestry cases, 448 European ancestry controls	NA	5q14.1	RASGRF2	rs716897-T		5E-6	(univariable, dominant)	3.7037036	[2.13-6.67]	Illumina [729373]	N
1199	chr5	80502902	80502903	rs17228156	21130132	Mick E	2010-12-01	Prog Neuropsychopharmacol Biol Psychiatry	Genome-wide association study of blood pressure response to methylphenidate treatment of attention-deficit/hyperactivity disorder.	Response to methylphenidate treatment in attention-deficit/hyperactivity disorder (blood pressure)	140 child cases	NA	5q14.1	RASGRF2	rs17228156-C	0.094	8E-6				Affymetrix [316934]	N
1199	chr5	80515950	80515951	rs6867370	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q14.1	NR	rs6867370-C	0.0122	7E-11	(TKFC)	3.928	NR unit increase	Illumina [1671387] (imputed)	N
1199	chr5	80565179	80565180	rs62365031	31557306	Wang RS	2019-09-26	Clin Pharmacol Ther	Pharmacogenomics and Placebo Response in a Randomized Clinical Trial in Asthma.	Response to placebo treatment in childhood asthma (FVC change)	250 European ancestry children	NA	5q14.1	CKMT2-AS1	rs62365031-G	0.08	7E-6		8.13	NR unit increase	Illumina [NR] (imputed)	N
1199	chr5	80599106	80599107	rs35668868	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	5q14.1	NR	rs35668868-?	NR	7E-6	(male)	0.1253	[0.07-0.18] unit increase	Illumina [11133794] (imputed)	N
1200	chr5	80642293	80642294	rs79345033	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	5q14.1	NR	rs79345033-?	NR	5E-6		10514.731	NR unit decrease	Illumina [2379855]	N
1200	chr5	80648694	80648695	rs7729671	24665060	Argos M	2014-03-24	J Med Genet	Genome-wide association study of smoking behaviours among Bangladeshi adults.	Smoking initiation	754 Bangladeshi ancestry never smoker males, 2,565 Bangladeshi ancestry never smoker females, 1,837 Bangladeshi ancestry ever smoker males, 198 Bangladeshi ancestry ever smoker females	NA	5q14.1	NR	rs7729671-?		3E-6	(females)			Illumina [1211988] (imputed)	N
1200	chr5	80654965	80654966	rs4703516	22863734	Ludwig KU	2012-08-05	Nat Genet	Genome-wide meta-analyses of nonsyndromic cleft lip with or without cleft palate identify six new risk loci.	Orofacial clefts	Up to 666 European ancestry trios, 399 European ancestry cases, 1,318 European ancestry controls	up to 795 East Asian ancestry trios	5q14.1	NR	rs4703516-?	NR	3E-6	(Meta-All, NSCL/P)			NR [497084]	N
1200	chr5	80719124	80719125	rs7732320	22472174	Xiao Y	2012-04-03	Clin Cancer Res	SSBP2 variants are associated with survival in glioblastoma patients.	Glioblastoma	315 European ancestry cases	434 European ancestry cases	5q14.1	SSBP2	rs7732320-T	0.11	1E-6		1.64	[1.34-2.00]	Illumina [314635]	N
1201	chr5	80784765	80784766	rs78229408	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	5q14.1	NR	rs78229408-?	NR	5E-6		10517.832	NR unit decrease	Illumina [2379855]	N
1201	chr5	80796367	80796368	rs10035291	33263727	Li HJ	2020-12-02	JAMA Psychiatry	Novel Risk Loci Associated With Genetic Risk for Bipolar Disorder Among Han Chinese Individuals: A Genome-Wide Association Study and Meta-analysis.	Bipolar disorder	1,822 Han Chinese ancestry cases, 4,650 Han Chinese ancestry controls, 20,352 European ancestry cases, 31,358 European ancestry controls	NA	5q14.1	SSBP2	rs10035291-T	NR	3E-8		1.068	[1.044-1.093]	Illumina [3742365] (imputed)	N
1201	chr5	80796367	80796368	rs10035291	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	5q14.1	RNU5E-1, RNU5D-1, ACOT12, SSBP2	rs10035291-T	0.675	3E-8		1.07015	[1.05-1.09]	NR [9372253] (imputed)	N
1201	chr5	80830787	80830788	rs59893724	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	5q14.1		rs59893724-G	NR	2E-14		0.0182	[0.013-0.023] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1201	chr5	80830787	80830788	rs59893724	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		5q14.1	SSBP2	rs59893724-A	0.756352	9E-13		0.0114154	[0.0083-0.0145] unit increase	Affymetrix [12370749]	N
1201	chr5	80830787	80830788	rs59893724	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	5q14.1	NR	rs59893724-?	NR	3E-15				Affymetrix [~ 8270000] (imputed)	N
1201	chr5	80830787	80830788	rs59893724	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	5q14.1	NR	rs59893724-G	0.2446	5E-11		0.018898979	[0.013-0.025] unit decrease	Affymetrix [10549349] (imputed)	N
1201	chr5	80830787	80830788	rs59893724	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	5q14.1		rs59893724-?	NR	6E-15				NR [~ 8900000] (imputed)	N
1201	chr5	80838328	80838329	rs2972230	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	5q14.1		rs2972230-G	NR	8E-9		0.0122	[0.0081-0.0163] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1201	chr5	80841359	80841360	rs11740689	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	5q14.1		rs11740689-C	NR	2E-16		0.0157	[0.012-0.019] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1201	chr5	80841913	80841914	rs10942267	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	5q14.1	NA	rs10942267-A	0.6927	7E-16		0.0148	[0.011-0.018] unit increase	NR [~ 27400000] (imputed)	N
1201	chr5	80841913	80841914	rs10942267	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	5q14.1	NA	rs10942267-A	0.6927	7E-16		0.0148	[0.011-0.018] unit increase	NR [~ 27400000] (imputed)	N
1201	chr5	80849554	80849555	rs2972228	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	5q14.1	SSBP2	rs2972228-C	0.644871	1E-10		0.015171849	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1202	chr5	80872220	80872221	rs2973350	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	5q14.1	NR	rs2973350-T	0.638231	1E-10		0.012237	[0.0085-0.016] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1202	chr5	80961068	80961069	rs6887473	34002096	Mullins N	2021-05-17	Nat Genet	Genome-wide association study of more than 40,000 bipolar disorder cases provides new insights into the underlying biology.	Bipolar disorder	41,917 European ancestry cases, 371,549 European ancestry controls	NA	5q14.1	SSBP2	rs6887473-G	0.739	9E-9		1.06216	[1.04-1.08]	Affymetrix, Illumina [7549318] (imputed)	N
1202	chr5	80992494	80992495	rs446064	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	5q14.1	NR	rs446064-?	NR	9E-29				Affymetrix [NR]	N
1203	chr5	81014957	81014958	rs411840	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5q14.1		rs411840-?	NR	6E-9				NR [~ 8900000] (imputed)	N
1203	chr5	81069400	81069401	rs11744829	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	5q14.1	Intergenic	rs11744829-C	0.297	4E-9	(MTAG)	0.0148	[0.0099-0.0197] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1203	chr5	81069400	81069401	rs11744829	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	5q14.1	NR	rs11744829-?	NR	1E-7		5.293	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1203	chr5	81087533	81087534	rs410644	21079607	Wang K	2010-11-16	Mol Psychiatry	A genome-wide association study on common SNPs and rare CNVs in anorexia nervosa.	Anorexia nervosa	1,033 European ancestry cases, 3,733 European ancestry controls	NA	5q14.1	SSBP2	rs410644-?	0.47	7E-6				Illumina [~ 598000]	N
1203	chr5	81092786	81092787	rs386424	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	5q14.1	NR	rs386424-T	0.6999	1E-6	(total)	413.96295	[245.42-582.51] unit decrease	Affymetrix, Illumina [NR]	N
1203	chr5	81110865	81110866	rs1910005	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	5q14.1		rs1910005-T	0.708	6E-9		0.009	[0.0061-0.0119] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1203	chr5	81110865	81110866	rs1910005	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	5q14.1	Intergenic	rs1910005-T	0.708	1E-9	(MTAG)	0.0088	[0.0061-0.0115] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1203	chr5	81115838	81115839	rs72774916	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	5q14.1	NR	rs72774916-T	0.0924	2E-8	(EA)	0.0648	[0.042-0.088] unit decrease	Illumina [~ 11800000] (imputed)	N
1204	chr5	81173264	81173265	rs12658240	25644384	Davies G	2015-02-03	Mol Psychiatry	Genetic contributions to variation in general cognitive function: a meta-analysis of genome-wide association studies in the CHARGE consortium (N=53949).	Cognitive function	51,719 European ancestry individuals, 1,473 Erasmus Rucphen (founder/genetic isolate) individuals, 327 Korculan (founder/genetic isolate) individuals, 430 Orcadian (founder/genetic isolate) individuals	NA	5q14.1	intergenic	rs12658240-?	NR	8E-6		0.0291	[0.016-0.042] unit increase	Affymetrix, Illumina [2478500] (imputed)	N
1204	chr5	81183111	81183112	rs10041849	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	5q14.1	ATG10	rs10041849-A	0.401	8E-12		0.0082	[0.0058-0.0106] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
1204	chr5	81198640	81198641	rs2173934	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	5q14.1	ATG10	rs2173934-A	0.4076	7E-10		0.0121599715	[0.0083-0.016] unit increase	Illumina [9339358] (imputed)	N
1204	chr5	81247852	81247853	rs527329038	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	5q14.1	NR	rs527329038-C	1.0	5E-6		1.05	[-1.0276-3.1276]	Affymetrix [at least 143006] (imputed)	N
1205	chr5	81266381	81266382	rs10036653	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota (beta diversity)	858 Metropolitan French ancestry individuals	NA	5q14.1	NR	rs10036653-T	0.229	1E-6	(Jaccard metric)	4.698675	NR z-score increase	Illumina [5293637] (imputed)	N
1205	chr5	81268069	81268070	rs111549985	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	5q14.1	NR	rs111549985-G	0.2474	6E-12	(EA)	0.0498	[0.036-0.064] unit decrease	Illumina [~ 11800000] (imputed)	N
1205	chr5	81344060	81344061	rs543749957	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	5q14.1	NR	rs543749957-C	1.0	5E-7		1.0	[-1.058-3.058]	Affymetrix [at least 143006] (imputed)	N
1205	chr5	81379393	81379394	rs79581221	26030696	Cho MH	2015-06-01	Am J Respir Crit Care Med	A Genome-Wide Association Study of Emphysema and Airway Quantitative Imaging Phenotypes.	Airway imaging phenotypes	5,385 European ancestry chronic obstructive pulmonary disease cases, 901 African American chronic obstructive pulmonary disease cases, 3,613 European ancestry controls, 2,132 African American controls	NA	5q14.1	ATG10	rs79581221-T	NR	1E-6	(Pi10, Cases)	0.077	[0.046-0.108] unit decrease	Illumina [7600000] (imputed)	N
1206	chr5	81407915	81407916	rs1835112	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota (beta diversity)	858 Metropolitan French ancestry individuals	NA	5q14.2	NR	rs1835112-G	0.228	8E-7	(Jaccard metric)	4.8027554	NR z-score increase	Illumina [5293637] (imputed)	N
1206	chr5	81457357	81457358	rs2407064	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Breast cancer	17,881 European ancestry cases, 410,350 European ancestry controls	NA	5q14.2		rs2407064-A	NR	3E-8		1.0743446	NR	Affymetrix [7846216] (imputed)	N
1206	chr5	81512947	81512948	rs146817970	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	5q14.2	NR	rs146817970-T	0.2459	4E-13	(EA)	0.0532	[0.039-0.068] unit decrease	Illumina [~ 11800000] (imputed)	N
1207	chr5	81538045	81538046	rs7707921	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	5q14.2		rs7707921-A	NR	1E-12		1.05	[1.04-1.07]	Affymetrix, Illumina [NR] (imputed)	N
1207	chr5	81538045	81538046	rs7707921	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	5q14.2	ATG10	rs7707921-A	0.75	2E-12	(EA)	1.0416667	[1.02-1.06] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
1207	chr5	81538045	81538046	rs7707921	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	46,785 European ancestry cases, 42,892 European ancestry controls	NA	5q14.2	ATG10	rs7707921-A	0.77	4E-9		1.0752687		Affymetrix, Illumina [~ 14000000] (imputed)	N
1207	chr5	81538045	81538046	rs7707921	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	15,748 European ancestry cases, 18,084 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls	5q14.2	ATG10	rs7707921-A	0.77	5E-11		1.0752687	[1.05-1.1]	Affymetrix, Illumina [~ 11600000] (imputed)	N
1207	chr5	81562899	81562900	rs7709194	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	5q14.2	Intergenic	rs7709194-T	0.5264	2E-10		0.0124	[0.0085-0.0163] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1207	chr5	81612478	81612479	rs658912	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	5q14.2	NR	rs658912-G	0.361829	2E-8		0.03675925	[0.024-0.05] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1207	chr5	81612478	81612479	rs658912	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	5q14.2	Intergenic	rs658912-A	0.3769	4E-13	(MTAG)	0.0134	[0.0099-0.0169] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1207	chr5	81612478	81612479	rs658912	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	5q14.2	Intergenic	rs658912-A	0.3767	2E-12	(MTAG)	0.0119	[0.0086-0.0152] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1207	chr5	81612478	81612479	rs658912	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	5q14.2	Intergenic	rs658912-A	0.3739	3E-12	(MTAG)	0.0165	[0.012-0.021] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1207	chr5	81612478	81612479	rs658912	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	5q14.2	Intergenic	rs658912-A	0.3739	2E-8		0.0167	[0.011-0.022] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
1207	chr5	81612478	81612479	rs658912	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	5q14.2	NR	rs658912-?	NR	4E-6		4.619	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1207	chr5	81616380	81616381	rs420800	31801372	Strawbridge RJ	2019-12-05	Arterioscler Thromb Vasc Biol	Carotid Intima-Media Thickness: Novel Loci, Sex-Specific Effects, and Genetic Correlations With Obesity and Glucometabolic Traits in UKB.	Carotid intima media thickness (mean-maximum)	22,179 British ancestry individuals	NA	5q14.2	NR	rs420800-G	0.95	4E-7		0.017	[0.011-0.023] unit decrease	NR [NR] (imputed)	N
1207	chr5	81634498	81634499	rs758080886	31801372	Strawbridge RJ	2019-12-05	Arterioscler Thromb Vasc Biol	Carotid Intima-Media Thickness: Novel Loci, Sex-Specific Effects, and Genetic Correlations With Obesity and Glucometabolic Traits in UKB.	Carotid intima media thickness (mean)	10,708 British ancestry men, 11,471 British ancestry women	NA	5q14.2	ATG10, RPS23, ATP6AP1L	rs758080886-CA	0.15	3E-8		0.013	[0.0091-0.0169] unit increase	NR [NR] (imputed)	N
1207	chr5	81636367	81636368	rs2407156	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	5q14.2	NR	rs2407156-G	0.2383	2E-6	(EA)	0.0354	[0.021-0.05] unit decrease	Illumina [~ 11800000] (imputed)	N
1207	chr5	81637915	81637916	rs224904	30510157	Franceschini N	2018-12-03	Nat Commun	GWAS and colocalization analyses implicate carotid intima-media thickness and carotid plaque loci in cardiovascular outcomes.	Carotid intima media thickness	Up to 71,128 European ancestry individuals	NA	5q14.2	ATP6AP1L	rs224904-C	0.95	5E-8		0.0088	[0.0057-0.0119] unit decrease	Affymetrix, Illumina [9574088] (imputed)	N
1208	chr5	81662458	81662459	rs183669222	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	5q14.2	NR	rs183669222-?	NR	5E-9				Illumina [7760689] (imputed)	N
1208	chr5	81662458	81662459	rs183669222	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	5q14.2	NR	rs183669222-?	NR	4E-8				Illumina [7760689] (imputed)	N
1208	chr5	81662458	81662459	rs183669222	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	5q14.2	NR	rs183669222-?	NR	3E-10				Illumina [7760689] (imputed)	N
1208	chr5	81662458	81662459	rs183669222	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	5q14.2	NR	rs183669222-?	NR	2E-9				Illumina [7760689] (imputed)	N
1208	chr5	81684652	81684653	rs16899527	33483693	Clements CC	2021-01-22	Mol Psychiatry	Genome-wide association study of patients with a severe major depressive episode treated with electroconvulsive therapy.	Major depressive episode treated with electroconvulsive therapy	2,725 European ancestry cases, 3,290 European ancestry controls	NA	5q14.2	NR	rs16899527-?	NR	8E-6		1.584	[1.38-1.79]	Illumina [NR] (imputed)	N
1208	chr5	81716026	81716027	rs10491244	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	118,886 East Asian ancestry individuals	NA	5q14.2		rs10491244-A	0.284167	4E-9		0.0251751	[0.017-0.034] unit increase	Illumina [13474352] (imputed)	N
1208	chr5	81721837	81721838	rs17790400	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	5q14.2	NR	rs17790400-G	NR	1E-10		0.0192	[0.013-0.025] unit increase	Affymetrix [9000000] (imputed)	N
1208	chr5	81722746	81722747	rs224916	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	5q14.2		rs224916-G	NR	2E-21		0.0217	[0.017-0.026] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
1208	chr5	81722988	81722989	rs17790406	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Serum alkaline phosphatase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	5q14.2	ATP6AP1L, MIR3977	rs17790406-?		2E-8		0.0269	[0.017-0.036] unit decrease	Illumina [31500000] (imputed)	N
1208	chr5	81723031	81723032	rs73766540	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum alkaline phosphatase levels	105,030 Japanese ancestry individuals	NA	5q14.2	ATP6AP1L, MIR3977	rs73766540-?	NR	1E-8		0.02967	[0.02-0.04] unit increase novel	Illumina [6108953] (imputed)	N
1208	chr5	81723108	81723109	rs2897603	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta minimum area	35,110 individuals	NA	5q14.2		rs2897603-C	0.792984	1E-12		0.0621639	[0.045-0.079] increase	Affymetrix [NR]	N
1208	chr5	81723108	81723109	rs2897603	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta maximum area	31,908 individuals	NA	5q14.2		rs2897603-C	0.792727	5E-11		0.0588702	[0.041-0.077] increase	Affymetrix [NR]	N
1208	chr5	81730989	81730990	rs433920	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	5q14.2	ATP6AP1L, TMEM167A	rs433920-C	0.73	9E-19		8.85	z-score increase	Affymetrix [4311822] (imputed)	N
1208	chr5	81735944	81735945	rs78162728	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	5q14.2		rs78162728-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1209	chr5	81842022	81842023	rs12187334	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	5q14.2		rs12187334-C	0.4	5E-37		12.71	z score increase	Affymetrix [9061022] (imputed)	N
1209	chr5	81842022	81842023	rs12187334	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	5q14.2	NR	rs12187334-C	0.4282	1E-17				NR [9056863] (imputed)	N
1209	chr5	81855571	81855572	rs4703894	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 7)	19,670 European ancestry individuals	NA	5q14.2		rs4703894-?	NR	6E-28				NR [9705931] (imputed)	N
1209	chr5	81855571	81855572	rs4703894	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	5q14.2	NR	rs4703894-?		9E-17				NR [7428630] (imputed)	N
1209	chr5	81856536	81856537	rs905221	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	5q14.2	BCL11A	rs905221-?		7E-17				NR [7428630] (imputed)	N
1209	chr5	81865644	81865645	rs2385882	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	5q14.2		rs2385882-T	0.43	2E-93		20.5	z score increase	Affymetrix [9061022] (imputed)	N
1209	chr5	81865644	81865645	rs2385882	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	5q14.2		rs2385882-T	0.43	3E-39		13.1	z score increase	Affymetrix [9061022] (imputed)	N
1209	chr5	81865644	81865645	rs2385882	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	5q14.2	NR	rs2385882-T	0.4385	1E-17				NR [9056863] (imputed)	N
1209	chr5	81879899	81879900	rs7716685	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	5q14.2	NR	rs7716685-T	0.420813	2E-8		0.0175662	[0.011-0.024] unit increase	NR [19129689] (imputed)	N
1209	chr5	81881894	81881895	rs6888117	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs6888117-C	0.743463	2E-14		0.0789781	[0.058-0.1] increase	Affymetrix [11014269] (imputed)	N
1209	chr5	81882570	81882571	rs4147321	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	5q14.2	NR	rs4147321-C	0.7752	5E-6	(Entorhinal)	1.794455	[1.02-2.57] unit increase	Affymetrix, Illumina [NR]	N
1209	chr5	81883161	81883162	rs1847053	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs1847053-?		1E-8	(Anterior corona radiata)			NR [8955960] (imputed)	N
1209	chr5	81883161	81883162	rs1847053	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs1847053-?		3E-8	(Anterior corona radiata)			NR [8955960] (imputed)	N
1209	chr5	81888492	81888493	rs6452466	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q14.2	NR	rs6452466-?		5E-8	(Sagittal stratum)			NR [8955960] (imputed)	N
1209	chr5	81902417	81902418	rs6862381	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	5q14.2		rs6862381-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1209	chr5	81905702	81905703	rs77745910	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	5q14.2	NR	rs77745910-T	NR	9E-10		0.0203	[0.014-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
1210	chr5	81920586	81920587	rs55803832	35079123	Chambers T	2022-01-25	Mol Psychiatry	Genetic common variants associated with cerebellar volume and their overlap with mental disorders: a study on 33,265 individuals from the UK-Biobank.	Total cerebellar volume (excluding Crus I vermis)	33,265 European ancestry individuals	NA	5q14.2		rs55803832-A	NR	3E-12		0.0383	[0.028-0.049] unit decrease	Affymetrix [6193476] (imputed)	N
1210	chr5	81926441	81926442	rs1979871	34737425	Mansour Aly D	2021-11-04	Nat Genet	Genome-wide association analyses highlight etiological differences underlying newly defined subtypes of diabetes.	Severe insulin-deficient type 2 diabetes	1,193 Scandinavian ancestry cases, 2,744 Scandinavian ancestry controls	NA	5q14.2	ATP6AP1L	rs1979871-G	0.326	7E-6		1.276	[1.147 - 1.42]	Illumina [5398302] (imputed)	N
1210	chr5	81929359	81929360	rs13188633	30279459	van der Meer D	2018-10-02	Mol Psychiatry	Brain scans from 21,297 individuals reveal the genetic architecture of hippocampal subfield volumes.	Hippocampal tail volume (corrected for total hippocampal volume)	21,297 European ancestry individuals	NA	5q14.2		rs13188633-T	NR	8E-10		5.74	NR mm3 decrease	Affymetrix, Illumina [NR] (imputed)	N
1210	chr5	81939317	81939318	rs1032757	20208534	Rothenberg ME	2010-03-07	Nat Genet	Common variants at 5q22 associate with pediatric eosinophilic esophagitis.	Eosinophilic esophagitis (pediatric)	181 European ancestry cases, 1,974 European ancestry controls	170 European ancestry cases, 1,130 European ancestry controls	5q14.2	NR	rs1032757-T	0.07	2E-6		1.96	[1.40-2.74]	Illumina [~ 550000]	N
1210	chr5	81964183	81964184	rs115449331	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	5q14.2	NR	rs115449331-?	NR	9E-6		0.0076759	[0.0043-0.0111] unit decrease	Affymetrix [805426] (imputed)	N
1210	chr5	81974241	81974242	rs35388902	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	5q14.2		rs35388902-?	NR	2E-9				NR [9705931] (imputed)	N
1210	chr5	81979165	81979166	rs1847046	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5q14.2	TMEM167	rs1847046-?	NR	3E-6	(TAG 58:10)	0.16672716	[0.097-0.236] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1210	chr5	82012853	82012854	rs4703911	25760438	Anderson D	2015-03-11	PLoS One	First genome-wide association study in an Australian aboriginal population provides insights into genetic risk factors for body mass index and type 2 diabetes.	Type 2 diabetes	89 Martu Australian Aboriginal ancestry cases, 302 Martu Australian Aboriginal ancestry controls	NA	5q14.2	TMEM167A, XRCC4, ATP6AP1L	rs4703911-?	NR	7E-6		0.22	[0.12-0.32] unit increase	Illumina [1075436] (imputed)	N
1210	chr5	82018036	82018037	rs150007273	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	5q14.2	NR	rs150007273-?	NR	5E-8				Illumina [7760689] (imputed)	N
1210	chr5	82018036	82018037	rs150007273	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	5q14.2	NR	rs150007273-?	NR	2E-9				Illumina [7760689] (imputed)	N
1210	chr5	82018036	82018037	rs150007273	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	5q14.2	NR	rs150007273-?	NR	2E-8				Illumina [7760689] (imputed)	N
1210	chr5	82044845	82044846	rs72763726	29109912	Rawofi L	2017-11-02	PeerJ	Genome-wide association study of pigmentary traits (skin and iris color) in individuals of East Asian ancestry.	Iris color (b* coordinate)	377 East Asian ancestry individuals	NA	5q14.2	intergenic	rs72763726-T	0.09	5E-7		0.690923	[0.43-0.95] unit increase	Illumina [at least 520076] (imputed)	N
1210	chr5	82044845	82044846	rs72763726	29109912	Rawofi L	2017-11-02	PeerJ	Genome-wide association study of pigmentary traits (skin and iris color) in individuals of East Asian ancestry.	Iris color (a* coordinate)	377 East Asian ancestry individuals	NA	5q14.2	intergenic	rs72763726-T	0.0899124	2E-6		0.652	[0.39-0.92] unit increase	Illumina [at least 520076] (imputed)	N
1210	chr5	82048687	82048688	rs10462383	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	5q14.2	NR	rs10462383-T	0.44156	5E-18		0.026901	[0.021-0.033] unit increase	NR [19129689] (imputed)	N
1211	chr5	82062758	82062759	rs1423516	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	5q14.2		rs1423516-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1211	chr5	82124189	82124190	rs10078545	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 2)	4,680 European ancestry individuals	3,566 European ancestry individuals	5q14.2		rs10078545-A	0.310296372	2E-9				Illumina [7417619] (imputed)	N
1211	chr5	82124189	82124190	rs10078545	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Chin dimples	58,032 European ancestry cases, 13,457 European ancestry controls	NA	5q14.2	ATP6AP1L, TMEM167A	rs10078545-?	NR	1E-12		1.112	[1.080-1.145]	Illumina [13537761] (imputed)	N
1211	chr5	82172741	82172743	rs552417043	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference	1,254 whole genome sequenced European ancestry individuals, 3,074 whole genome sequenced individuals, 29,716 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 701 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,050 Mylopotamos (founder/genetic isolate) individuals, 883 Pomak (founder/genetic isolate) individuals	205,909 European ancestry individuals	5q14.2	LINC01338	rs552417043-CCT	0.9926	9E-7		0.3028	[0.18-0.42] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1211	chr5	82180305	82180306	rs4518370	25057126	Ramos YF	2014-07-23	J Med Genet	Meta-analysis identifies loci affecting levels of the potential osteoarthritis biomarkers sCOMP and uCTX-II with genome wide significance.	Osteoarthritis biomarkers	up to 4,654 European ancestry individuals	964 European ancestry individuals	5q14.2	SCARNA18, XRCC4, TMEM167A	rs4518370-G	0.75	1E-6	(uCTX-II)	0.11	[NR] unit decrease	Illumina [up to 1961964] (imputed)	N
1212	chr5	82208955	82208956	rs6452497	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	5q14.2	NR	rs6452497-?	NR	2E-8	(left vessel)			NR [9227495] (imputed)	N
1212	chr5	82260020	82260021	rs256811	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	5q14.2	intergenic	rs256811-C	0.03	3E-6				Illumina [905956]	N
1212	chr5	82260020	82260021	rs256811	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	5q14.2	intergenic	rs256811-?	0.11	5E-6	(AA)	3.87	[3.11-4.63]	Illumina [905956]	N
1212	chr5	82266049	82266050	rs32881	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs32881-?		2E-9	(Genu of corpus callosum)			NR [8955960] (imputed)	N
1212	chr5	82273378	82273379	rs10035349	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	5q14.2		rs10035349-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1212	chr5	82273378	82273379	rs10035349	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	5q14.2	NR	rs10035349-A	0.255044	2E-10		0.0225826	[0.016-0.03] unit decrease	NR [19129689] (imputed)	N
1212	chr5	82299429	82299430	rs75282487	31311600	Namjou B	2019-07-17	BMC Med	GWAS and enrichment analyses of non-alcoholic fatty liver disease identify new trait-associated genes and pathways across eMERGE Network.	Aspartate aminotransferase levels in non-alcoholic fatty liver disease	1,075 European ancestry individuals	NA	5q14.2	intergenic	rs75282487-C	0.0470205	2E-6		0.458644	[0.27-0.65] unit decrease	NR [7263501] (imputed)	N
1213	chr5	82332889	82332890	rs113300196	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	5q14.2		rs113300196-A	0.04	4E-8		5.5	z score increase	Affymetrix [9061022] (imputed)	N
1213	chr5	82350190	82350191	rs27493	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	5q14.2	NR	rs27493-A	0.4047	5E-9	(Parahippocampal)	2.6771507	[1.78-3.58] unit decrease	Affymetrix, Illumina [NR]	N
1213	chr5	82390730	82390731	rs10473864	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs10473864-?		6E-9	(Average across all tracts)			NR [8955960] (imputed)	N
1213	chr5	82390730	82390731	rs10473864	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs10473864-?		2E-8	(Genu of corpus callosum)			NR [8955960] (imputed)	N
1213	chr5	82390730	82390731	rs10473864	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q14.2	NR	rs10473864-?		5E-8	(Average across all tracts)			NR [8955960] (imputed)	N
1213	chr5	82405016	82405017	rs140918547	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	5q14.2	NR	rs140918547-G	0.01	4E-6		1.65	[1.43-1.87]	Illumina [8468885] (imputed)	N
1213	chr5	82410795	82410796	rs114397494	25187353	Goldstein JI	2014-09-04	Nat Commun	Clozapine-induced agranulocytosis is associated with rare HLA-DQB1 and HLA-B alleles.	Clozapine-induced agranulocytosis	161 European ancestry cases, 1,196 European ancestry clozapine-treated and untreated controls	NA	5q14.2	TMEM167A, XRCC4	rs114397494-G0.0414	0.0414	5E-6		2.96	[2.49-3.43]	Illumina [8809853] (imputed)	N
1213	chr5	82418055	82418056	rs28745309	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Squamous cell lung carcinoma	7,426 European ancestry cases, 55,627 European ancestry controls	NA	5q14.2	XRCC4	rs28745309-T	0.010076427	5E-6		1.4954325	[1.257486816-1.778402944]	Illumina [10439017] (imputed)	N
1213	chr5	82424985	82424986	rs368031913	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs368031913-?		7E-9	(Average across all tracts)			NR [8955960] (imputed)	N
1213	chr5	82424985	82424986	rs368031913	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs368031913-?		2E-8	(Retrolenticular part of internal capsule)			NR [8955960] (imputed)	N
1213	chr5	82431210	82431210	rs35742750	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	5q14.2		rs35742750-?	NR	7E-11		0.0132787	[0.0091-0.0175] unit increase	Affymetrix [20259828] (imputed)	N
1213	chr5	82437430	82437431	rs10474093	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	5q14.2		rs10474093-?	NR	3E-11				NR [~ 8900000] (imputed)	N
1213	chr5	82437446	82437447	rs10473868	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	5q14.2	XRCC4	rs10473868-G	0.566326	6E-10		0.0115842	[0.0079-0.0153] unit increase	NR [13737936] (imputed)	N
1214	chr5	82557204	82557205	rs74793735	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels	3,806 African American individuals	NA	5q14.2		rs74793735-?	NR	2E-6		0.14	[0.079-0.201] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1214	chr5	82567885	82567886	rs78913069	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Squamous cell lung carcinoma	7,426 European ancestry cases, 55,627 European ancestry controls	NA	5q14.2	XRCC4	rs78913069-A	0.010668975	7E-6		1.5066519	[1.260762692-1.800497393]	Illumina [10439017] (imputed)	N
1215	chr5	82618570	82618571	rs2077708	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q14.2	NR	rs2077708-C	0.01045	3E-8	(MYO1B)	0.1504	NR unit increase	Illumina [1671387] (imputed)	N
1216	chr5	82716118	82716119	rs13180395	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs13180395-?		4E-10	(Cingulate gyrus)			NR [8955960] (imputed)	N
1216	chr5	82716118	82716119	rs13180395	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs13180395-?		3E-8	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
1216	chr5	82716118	82716119	rs13180395	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs13180395-?		3E-10	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
1216	chr5	82717146	82717147	rs10055352	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs10055352-?		3E-9	(Cingulate gyrus)			NR [8955960] (imputed)	N
1216	chr5	82717146	82717147	rs10055352	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs10055352-?		3E-10	(Average across all tracts)			NR [8955960] (imputed)	N
1216	chr5	82717146	82717147	rs10055352	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs10055352-?		2E-10	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
1216	chr5	82717146	82717147	rs10055352	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs10055352-?		2E-10	(Anterior corona radiata)			NR [8955960] (imputed)	N
1216	chr5	82717146	82717147	rs10055352	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs10055352-?		1E-8	(Uncinate fasciculus)			NR [8955960] (imputed)	N
1216	chr5	82717146	82717147	rs10055352	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs10055352-?		1E-8	(Sagittal stratum)			NR [8955960] (imputed)	N
1216	chr5	82717146	82717147	rs10055352	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs10055352-?		8E-9	(Sagittal stratum)			NR [8955960] (imputed)	N
1216	chr5	82717146	82717147	rs10055352	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs10055352-?		4E-8	(Posterior corona radiata )			NR [8955960] (imputed)	N
1216	chr5	82717146	82717147	rs10055352	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs10055352-?		3E-8	(Retrolenticular part of internal capsule)			NR [8955960] (imputed)	N
1216	chr5	82717146	82717147	rs10055352	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs10055352-?		2E-8	(Genu of corpus callosum)			NR [8955960] (imputed)	N
1216	chr5	82717146	82717147	rs10055352	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs10055352-?		1E-10	(Average across all tracts)			NR [8955960] (imputed)	N
1216	chr5	82717146	82717147	rs10055352	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs10055352-?		1E-10	(Anterior corona radiata)			NR [8955960] (imputed)	N
1216	chr5	82717146	82717147	rs10055352	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q14.2	NR	rs10055352-?		6E-9	(Average across all tracts)			NR [8955960] (imputed)	N
1216	chr5	82717146	82717147	rs10055352	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs10055352-?		3E-8	(Average across all tracts)			NR [8955960] (imputed)	N
1216	chr5	82717884	82717885	rs2591453	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs2591453-?		9E-10	(Anterior corona radiata)			NR [8955960] (imputed)	N
1216	chr5	82717884	82717885	rs2591453	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs2591453-?		5E-8	(Cingulate gyrus)			NR [8955960] (imputed)	N
1216	chr5	82717884	82717885	rs2591453	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs2591453-?		7E-11	(Cingulate gyrus)			NR [8955960] (imputed)	N
1216	chr5	82717884	82717885	rs2591453	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs2591453-?		5E-9	(Retrolenticular part of internal capsule)			NR [8955960] (imputed)	N
1216	chr5	82717884	82717885	rs2591453	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs2591453-?		4E-8	(Posterior corona radiata )			NR [8955960] (imputed)	N
1216	chr5	82717884	82717885	rs2591453	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs2591453-?		3E-8	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
1216	chr5	82717884	82717885	rs2591453	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs2591453-?		2E-10	(Anterior corona radiata)			NR [8955960] (imputed)	N
1216	chr5	82717884	82717885	rs2591453	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs2591453-?		1E-9	(Superior corona radiata)			NR [8955960] (imputed)	N
1216	chr5	82717884	82717885	rs2591453	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs2591453-?		1E-8	(Average across all tracts)			NR [8955960] (imputed)	N
1216	chr5	82720582	82720583	rs1445778	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota alpha diversity (Simpson index)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	5q14.2		rs1445778-T	NR	6E-6		4.5425806	z score increase	Affymetrix, Illumina [NR] (imputed)	N
1216	chr5	82724808	82724809	rs6883712	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs6883712-?		8E-11	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
1216	chr5	82724808	82724809	rs6883712	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs6883712-?		5E-12	(Uncinate fasciculus)			NR [8955960] (imputed)	N
1216	chr5	82724808	82724809	rs6883712	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs6883712-?		5E-12	(Sagittal stratum)			NR [8955960] (imputed)	N
1216	chr5	82724808	82724809	rs6883712	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs6883712-?		5E-12	(Average across all tracts)			NR [8955960] (imputed)	N
1216	chr5	82724808	82724809	rs6883712	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs6883712-?		4E-9	(Superior corona radiata)			NR [8955960] (imputed)	N
1216	chr5	82724808	82724809	rs6883712	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs6883712-?		3E-9	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
1216	chr5	82724808	82724809	rs6883712	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs6883712-?		3E-8	(Posterior corona radiata )			NR [8955960] (imputed)	N
1216	chr5	82724808	82724809	rs6883712	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs6883712-?		3E-8	(Cingulate gyrus)			NR [8955960] (imputed)	N
1216	chr5	82724808	82724809	rs6883712	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs6883712-?		6E-10	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
1216	chr5	82724808	82724809	rs6883712	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs6883712-?		5E-12	(Average across all tracts)			NR [8955960] (imputed)	N
1216	chr5	82724808	82724809	rs6883712	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs6883712-?		2E-11	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
1216	chr5	82724808	82724809	rs6883712	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs6883712-?		1E-9	(Superior corona radiata)			NR [8955960] (imputed)	N
1216	chr5	82724808	82724809	rs6883712	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs6883712-?		1E-9	(Posterior corona radiata )			NR [8955960] (imputed)	N
1216	chr5	82724808	82724809	rs6883712	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs6883712-?		1E-10	(Sagittal stratum)			NR [8955960] (imputed)	N
1216	chr5	82724808	82724809	rs6883712	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs6883712-?		1E-10	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
1216	chr5	82724808	82724809	rs6883712	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q14.2	NR	rs6883712-?		2E-8	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
1216	chr5	82724808	82724809	rs6883712	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q14.2	NR	rs6883712-?		2E-11	(Average across all tracts)			NR [8955960] (imputed)	N
1216	chr5	82724808	82724809	rs6883712	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q14.2	NR	rs6883712-?		2E-10	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
1216	chr5	82724808	82724809	rs6883712	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q14.2	NR	rs6883712-?		1E-9	(Sagittal stratum)			NR [8955960] (imputed)	N
1216	chr5	82725902	82725903	rs76409056	33831438	Williams JE	2021-04-05	Genomics	Key genetic variants associated with variation of milk oligosaccharides from diverse human populations.	Human milk oligosaccharide concentration (lacto-N-fucopentaose III) in secretors	305 European, Sub-Saharan African, Hispanic or unknown ancestry individuals	NA	5q14.2		rs76409056-?	NR	2E-9				Illumina [1128286]	N
1216	chr5	82725902	82725903	rs76409056	33831438	Williams JE	2021-04-05	Genomics	Key genetic variants associated with variation of milk oligosaccharides from diverse human populations.	Human milk oligosaccharide concentration (lacto-N-fucopentaose III)	395 European, Sub-Saharan African, Hispanic or unknown ancestry individuals	NA	5q14.2		rs76409056-?	NR	2E-13				Illumina [1128286]	N
1216	chr5	82727858	82727859	rs10474100	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs10474100-?		3E-8	(External capsule )			NR [8955960] (imputed)	N
1216	chr5	82727858	82727859	rs10474100	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs10474100-?		1E-16	(Anterior corona radiata)			NR [8955960] (imputed)	N
1216	chr5	82727858	82727859	rs10474100	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs10474100-?		7E-13	(Cingulate gyrus)			NR [8955960] (imputed)	N
1216	chr5	82727858	82727859	rs10474100	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs10474100-?		4E-18	(Anterior corona radiata)			NR [8955960] (imputed)	N
1216	chr5	82727858	82727859	rs10474100	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs10474100-?		3E-9	(Body of corpus callosum)			NR [8955960] (imputed)	N
1216	chr5	82727858	82727859	rs10474100	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs10474100-?		1E-8	(External capsule )			NR [8955960] (imputed)	N
1216	chr5	82727858	82727859	rs10474100	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q14.2	NR	rs10474100-?		8E-9	(Anterior corona radiata)			NR [8955960] (imputed)	N
1216	chr5	82727858	82727859	rs10474100	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs10474100-?		1E-13	(Anterior corona radiata)			NR [8955960] (imputed)	N
1216	chr5	82728980	82728981	rs9293338	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs9293338-?		4E-12	(Retrolenticular part of internal capsule)			NR [8955960] (imputed)	N
1216	chr5	82728980	82728981	rs9293338	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs9293338-?		2E-12	(Genu of corpus callosum)			NR [8955960] (imputed)	N
1216	chr5	82728980	82728981	rs9293338	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q14.2	NR	rs9293338-?		4E-9	(Retrolenticular part of internal capsule)			NR [8955960] (imputed)	N
1216	chr5	82728980	82728981	rs9293338	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs9293338-?		7E-11	(Average across all tracts)			NR [8955960] (imputed)	N
1216	chr5	82728980	82728981	rs9293338	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs9293338-?		6E-11	(Genu of corpus callosum)			NR [8955960] (imputed)	N
1216	chr5	82730649	82730650	rs33590	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs33590-?		1E-9	(Cingulate gyrus)			NR [8955960] (imputed)	N
1216	chr5	82731441	82731442	rs13166766	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs13166766-?		5E-15	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
1216	chr5	82731441	82731442	rs13166766	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs13166766-?		1E-10	(Retrolenticular part of internal capsule)			NR [8955960] (imputed)	N
1216	chr5	82742117	82742118	rs12188947	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (multi-trait analysis)	90,939 European ancestry individuals	NA	5q14.2	XRCC4, VCAN	rs12188947-A	0.6	2E-9		0.0053	NR unit increase	Affymetrix, Illumina [8002429] (imputed)	N
1216	chr5	82744603	82744604	rs7717697	31809533	Han X	2019-09-06	Hum Mol Genet	Genome-wide association analysis of 95 549 individuals identifies novel loci and genes influencing optic disc morphology.	Optic disc size	67,040 British ancestry individuals	28,509 European ancestry individuals	5q14.2	VCAN	rs7717697-T	0.59	2E-12		0.01	unit increase	Affymetrix [8928767] (imputed)	N
1216	chr5	82744603	82744604	rs7717697	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Vertical cup-disc ratio	21,768 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	8,168 Asian ancestry individuals	5q14.2	VCAN	rs7717697-C	NR	7E-9		0.007	[0.005-0.009] unit decrease	Affymetrix, Illumina [~ 8000000] (imputed)	N
1216	chr5	82744603	82744604	rs7717697	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Vertical cup-disc ratio	21,768 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	8,168 Asian ancestry individuals	5q14.2	VCAN	rs7717697-C	NR	3E-7	(EA)	0.007	[0.005-0.009] unit decrease	Affymetrix, Illumina [~ 8000000] (imputed)	N
1216	chr5	82754648	82754649	rs10044001	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs10044001-?		5E-8	(Superior corona radiata)			NR [8955960] (imputed)	N
1216	chr5	82754648	82754649	rs10044001	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs10044001-?		4E-9	(Retrolenticular part of internal capsule)			NR [8955960] (imputed)	N
1216	chr5	82754648	82754649	rs10044001	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs10044001-?		4E-10	(Anterior corona radiata)			NR [8955960] (imputed)	N
1216	chr5	82754648	82754649	rs10044001	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs10044001-?		3E-9	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
1216	chr5	82754648	82754649	rs10044001	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs10044001-?		2E-8	(Uncinate fasciculus)			NR [8955960] (imputed)	N
1216	chr5	82754648	82754649	rs10044001	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs10044001-?		2E-8	(Sagittal stratum)			NR [8955960] (imputed)	N
1216	chr5	82754648	82754649	rs10044001	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs10044001-?		1E-8	(Average across all tracts)			NR [8955960] (imputed)	N
1216	chr5	82754648	82754649	rs10044001	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs10044001-?		6E-9	(Superior corona radiata)			NR [8955960] (imputed)	N
1216	chr5	82754648	82754649	rs10044001	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs10044001-?		4E-9	(Average across all tracts)			NR [8955960] (imputed)	N
1216	chr5	82754648	82754649	rs10044001	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs10044001-?		2E-8	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
1216	chr5	82754648	82754649	rs10044001	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs10044001-?		1E-8	(Retrolenticular part of internal capsule)			NR [8955960] (imputed)	N
1216	chr5	82754648	82754649	rs10044001	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs10044001-?		1E-10	(Anterior corona radiata)			NR [8955960] (imputed)	N
1216	chr5	82754648	82754649	rs10044001	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs10044001-?		3E-8	(Genu of corpus callosum)			NR [8955960] (imputed)	N
1216	chr5	82760016	82760017	rs28296	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs28296-?		5E-9	(Retrolenticular part of internal capsule)			NR [8955960] (imputed)	N
1216	chr5	82760016	82760017	rs28296	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs28296-?		3E-9	(Anterior corona radiata)			NR [8955960] (imputed)	N
1216	chr5	82760016	82760017	rs28296	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs28296-?		3E-9	(Anterior corona radiata)			NR [8955960] (imputed)	N
1216	chr5	82760016	82760017	rs28296	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs28296-?		1E-8	(Superior corona radiata)			NR [8955960] (imputed)	N
1216	chr5	82760016	82760017	rs28296	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs28296-?		1E-8	(Retrolenticular part of internal capsule)			NR [8955960] (imputed)	N
1216	chr5	82770557	82770558	rs11746859	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs11746859-?		3E-9	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
1216	chr5	82770557	82770558	rs11746859	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs11746859-?		2E-8	(Uncinate fasciculus)			NR [8955960] (imputed)	N
1216	chr5	82770557	82770558	rs11746859	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs11746859-?		2E-8	(Superior corona radiata)			NR [8955960] (imputed)	N
1216	chr5	82770557	82770558	rs11746859	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs11746859-?		2E-8	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
1216	chr5	82770557	82770558	rs11746859	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs11746859-?		2E-8	(Sagittal stratum)			NR [8955960] (imputed)	N
1216	chr5	82770557	82770558	rs11746859	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs11746859-?		2E-8	(Average across all tracts)			NR [8955960] (imputed)	N
1216	chr5	82770557	82770558	rs11746859	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs11746859-?		2E-11	(Anterior corona radiata)			NR [8955960] (imputed)	N
1216	chr5	82770557	82770558	rs11746859	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs11746859-?		1E-9	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
1216	chr5	82770557	82770558	rs11746859	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs11746859-?		4E-9	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
1216	chr5	82770557	82770558	rs11746859	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs11746859-?		2E-9	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
1216	chr5	82770557	82770558	rs11746859	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs11746859-?		2E-8	(Superior corona radiata)			NR [8955960] (imputed)	N
1216	chr5	82770557	82770558	rs11746859	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs11746859-?		1E-8	(Sagittal stratum)			NR [8955960] (imputed)	N
1216	chr5	82770557	82770558	rs11746859	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs11746859-?		1E-11	(Anterior corona radiata)			NR [8955960] (imputed)	N
1216	chr5	82770557	82770558	rs11746859	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q14.2	NR	rs11746859-?		4E-8	(Anterior corona radiata)			NR [8955960] (imputed)	N
1216	chr5	82770557	82770558	rs11746859	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q14.2	NR	rs11746859-?		3E-8	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
1216	chr5	82770557	82770558	rs11746859	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q14.2	NR	rs11746859-?		2E-9	(Average across all tracts)			NR [8955960] (imputed)	N
1216	chr5	82770557	82770558	rs11746859	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q14.2	NR	rs11746859-?		1E-8	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
1216	chr5	82770922	82770923	rs35194537	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs35194537-?		5E-16	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
1216	chr5	82770922	82770923	rs35194537	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q14.2	NR	rs35194537-?		5E-10	(Posterior corona radiata )			NR [8955960] (imputed)	N
1216	chr5	82770922	82770923	rs35194537	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs35194537-?		9E-9	(Sagittal stratum)			NR [8955960] (imputed)	N
1216	chr5	82771382	82771383	rs994004	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs994004-?		6E-13	(Posterior corona radiata )			NR [8955960] (imputed)	N
1216	chr5	82771382	82771383	rs994004	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs994004-?		4E-18	(Uncinate fasciculus)			NR [8955960] (imputed)	N
1216	chr5	82771382	82771383	rs994004	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs994004-?		4E-18	(Sagittal stratum)			NR [8955960] (imputed)	N
1216	chr5	82771382	82771383	rs994004	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs994004-?		4E-16	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
1216	chr5	82771382	82771383	rs994004	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs994004-?		1E-15	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
1216	chr5	82771382	82771383	rs994004	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs994004-?		9E-18	(Sagittal stratum)			NR [8955960] (imputed)	N
1216	chr5	82771382	82771383	rs994004	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs994004-?		3E-18	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
1216	chr5	82771382	82771383	rs994004	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs994004-?		1E-17	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
1216	chr5	82771382	82771383	rs994004	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs994004-?		1E-14	(Posterior corona radiata )			NR [8955960] (imputed)	N
1216	chr5	82771382	82771383	rs994004	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q14.2	NR	rs994004-?		2E-12	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
1216	chr5	82771382	82771383	rs994004	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q14.2	NR	rs994004-?		1E-10	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
1216	chr5	82771382	82771383	rs994004	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs994004-?		4E-9	(Posterior corona radiata )			NR [8955960] (imputed)	N
1216	chr5	82771382	82771383	rs994004	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs994004-?		2E-11	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
1216	chr5	82774903	82774904	rs33599	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs33599-?		4E-11	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
1216	chr5	82774903	82774904	rs33599	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs33599-?		2E-12	(Retrolenticular part of internal capsule)			NR [8955960] (imputed)	N
1216	chr5	82774903	82774904	rs33599	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs33599-?		1E-11	(Superior corona radiata)			NR [8955960] (imputed)	N
1216	chr5	82774903	82774904	rs33599	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q14.2	NR	rs33599-?		7E-9	(Retrolenticular part of internal capsule)			NR [8955960] (imputed)	N
1216	chr5	82774903	82774904	rs33599	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q14.2	NR	rs33599-?		4E-8	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
1216	chr5	82776300	82776301	rs6867396	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs6867396-?		9E-9	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
1216	chr5	82776300	82776301	rs6867396	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs6867396-?		2E-8	(Fornix (cres) / Stria terminalis)			NR [8955960] (imputed)	N
1216	chr5	82776300	82776301	rs6867396	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs6867396-?		2E-10	(Uncinate fasciculus)			NR [8955960] (imputed)	N
1216	chr5	82776300	82776301	rs6867396	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs6867396-?		2E-10	(Sagittal stratum)			NR [8955960] (imputed)	N
1216	chr5	82776300	82776301	rs6867396	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs6867396-?		1E-8	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
1216	chr5	82776300	82776301	rs6867396	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs6867396-?		1E-8	(Retrolenticular part of internal capsule)			NR [8955960] (imputed)	N
1216	chr5	82776300	82776301	rs6867396	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs6867396-?		1E-8	(Average across all tracts)			NR [8955960] (imputed)	N
1216	chr5	82776300	82776301	rs6867396	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs6867396-?		7E-10	(Sagittal stratum)			NR [8955960] (imputed)	N
1216	chr5	82776300	82776301	rs6867396	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs6867396-?		4E-9	(Retrolenticular part of internal capsule)			NR [8955960] (imputed)	N
1216	chr5	82776300	82776301	rs6867396	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs6867396-?		3E-8	(Posterior corona radiata )			NR [8955960] (imputed)	N
1216	chr5	82776300	82776301	rs6867396	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs6867396-?		2E-8	(Average across all tracts)			NR [8955960] (imputed)	N
1216	chr5	82776300	82776301	rs6867396	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs6867396-?		1E-8	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
1216	chr5	82778212	82778213	rs34503709	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs34503709-?		8E-11	(Body of corpus callosum)			NR [8955960] (imputed)	N
1216	chr5	82778212	82778213	rs34503709	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs34503709-?		3E-18	(Average across all tracts)			NR [8955960] (imputed)	N
1216	chr5	82778212	82778213	rs34503709	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs34503709-?		2E-16	(Superior corona radiata)			NR [8955960] (imputed)	N
1216	chr5	82778212	82778213	rs34503709	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs34503709-?		2E-12	(Genu of corpus callosum)			NR [8955960] (imputed)	N
1216	chr5	82778212	82778213	rs34503709	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs34503709-?		2E-12	(Cingulate gyrus)			NR [8955960] (imputed)	N
1216	chr5	82778212	82778213	rs34503709	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs34503709-?		2E-10	(Superior fronto-occipital fasciculus)			NR [8955960] (imputed)	N
1216	chr5	82778212	82778213	rs34503709	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs34503709-?		4E-9	(Superior fronto-occipital fasciculus)			NR [8955960] (imputed)	N
1216	chr5	82778212	82778213	rs34503709	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs34503709-?		4E-16	(Superior corona radiata)			NR [8955960] (imputed)	N
1216	chr5	82778212	82778213	rs34503709	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs34503709-?		1E-17	(Average across all tracts)			NR [8955960] (imputed)	N
1216	chr5	82778212	82778213	rs34503709	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q14.2	NR	rs34503709-?		7E-9	(Genu of corpus callosum)			NR [8955960] (imputed)	N
1216	chr5	82778212	82778213	rs34503709	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q14.2	NR	rs34503709-?		7E-18	(Average across all tracts)			NR [8955960] (imputed)	N
1216	chr5	82778212	82778213	rs34503709	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q14.2	NR	rs34503709-?		3E-8	(Superior corona radiata)			NR [8955960] (imputed)	N
1216	chr5	82778212	82778213	rs34503709	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q14.2	NR	rs34503709-?		3E-8	(Body of corpus callosum)			NR [8955960] (imputed)	N
1216	chr5	82782033	82782034	rs10045126	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q14.2	NR	rs10045126-?		1E-15	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
1216	chr5	82782529	82782530	rs11749904	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	5q14.2	NR	rs11749904-?	NR	1E-8	(grey matter)			NR [9227495] (imputed)	N
1216	chr5	82782529	82782530	rs11749904	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q14.2	NR	rs11749904-?		4E-13	(Sagittal stratum)			NR [8955960] (imputed)	N
1216	chr5	82783907	82783908	rs10043829	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs10043829-?		2E-9	(Fornix (cres) / Stria terminalis)			NR [8955960] (imputed)	N
1216	chr5	82783907	82783908	rs10043829	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs10043829-?		2E-11	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
1216	chr5	82786548	82786549	rs4558964	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs4558964-?		8E-11	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
1216	chr5	82786548	82786549	rs4558964	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs4558964-?		7E-11	(Average across all tracts)			NR [8955960] (imputed)	N
1216	chr5	82786548	82786549	rs4558964	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs4558964-?		5E-14	(Anterior corona radiata)			NR [8955960] (imputed)	N
1216	chr5	82786548	82786549	rs4558964	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs4558964-?		5E-12	(Posterior corona radiata )			NR [8955960] (imputed)	N
1216	chr5	82786548	82786549	rs4558964	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs4558964-?		4E-8	(Cingulate gyrus)			NR [8955960] (imputed)	N
1216	chr5	82786548	82786549	rs4558964	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs4558964-?		3E-12	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
1216	chr5	82786548	82786549	rs4558964	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs4558964-?		2E-10	(Uncinate fasciculus)			NR [8955960] (imputed)	N
1216	chr5	82786548	82786549	rs4558964	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs4558964-?		2E-10	(Sagittal stratum)			NR [8955960] (imputed)	N
1216	chr5	82786548	82786549	rs4558964	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs4558964-?		8E-11	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
1216	chr5	82786548	82786549	rs4558964	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs4558964-?		8E-11	(Cingulate gyrus)			NR [8955960] (imputed)	N
1216	chr5	82786548	82786549	rs4558964	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs4558964-?		6E-12	(Retrolenticular part of internal capsule)			NR [8955960] (imputed)	N
1216	chr5	82786548	82786549	rs4558964	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs4558964-?		4E-9	(Body of corpus callosum)			NR [8955960] (imputed)	N
1216	chr5	82786548	82786549	rs4558964	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs4558964-?		4E-12	(Posterior corona radiata )			NR [8955960] (imputed)	N
1216	chr5	82786548	82786549	rs4558964	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs4558964-?		4E-11	(Average across all tracts)			NR [8955960] (imputed)	N
1216	chr5	82786548	82786549	rs4558964	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs4558964-?		3E-11	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
1216	chr5	82786548	82786549	rs4558964	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs4558964-?		2E-9	(Genu of corpus callosum)			NR [8955960] (imputed)	N
1216	chr5	82786548	82786549	rs4558964	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs4558964-?		2E-12	(Superior corona radiata)			NR [8955960] (imputed)	N
1216	chr5	82786548	82786549	rs4558964	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs4558964-?		1E-14	(Anterior corona radiata)			NR [8955960] (imputed)	N
1216	chr5	82786548	82786549	rs4558964	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs4558964-?		1E-11	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
1216	chr5	82786548	82786549	rs4558964	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs4558964-?		1E-10	(Sagittal stratum)			NR [8955960] (imputed)	N
1216	chr5	82786548	82786549	rs4558964	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q14.2	NR	rs4558964-?		8E-9	(Anterior corona radiata)			NR [8955960] (imputed)	N
1216	chr5	82786548	82786549	rs4558964	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q14.2	NR	rs4558964-?		7E-10	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
1216	chr5	82786548	82786549	rs4558964	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q14.2	NR	rs4558964-?		2E-9	(Average across all tracts)			NR [8955960] (imputed)	N
1216	chr5	82786548	82786549	rs4558964	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q14.2	NR	rs4558964-?		2E-8	(Posterior corona radiata )			NR [8955960] (imputed)	N
1216	chr5	82786548	82786549	rs4558964	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q14.2	NR	rs4558964-?		1E-8	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
1216	chr5	82786548	82786549	rs4558964	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs4558964-?		3E-8	(Average across all tracts)			NR [8955960] (imputed)	N
1216	chr5	82786548	82786549	rs4558964	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs4558964-?		1E-9	(Anterior corona radiata)			NR [8955960] (imputed)	N
1216	chr5	82786548	82786549	rs4558964	29752348	Rutten-Jacobs LCA	2018-05-11	Stroke	Genetic Study of White Matter Integrity in UK Biobank (N=8448) and the Overlap With Stroke, Depression, and Dementia.	White matter integrity (mean diffusivity)	8,239 European ancestry individuals	NA	5q14.2	XRCC4, VCAN, HAPLN1	rs4558964-?	NR	6E-13	(Conditioned on rs13164785)			Affymetrix [up to 39131578] (imputed)	N
1216	chr5	82786548	82786549	rs4558964	29752348	Rutten-Jacobs LCA	2018-05-11	Stroke	Genetic Study of White Matter Integrity in UK Biobank (N=8448) and the Overlap With Stroke, Depression, and Dementia.	White matter integrity (fractional anisotropy)	8,239 European ancestry individuals	NA	5q14.2	XRCC4, VCAN, HAPLN1	rs4558964-?	NR	5E-10	(Conditioned on rs67827860)			Affymetrix [up to 39131578] (imputed)	N
1216	chr5	82787950	82787951	rs13167610	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs13167610-?		2E-9	(Uncinate fasciculus)			NR [8955960] (imputed)	N
1216	chr5	82789492	82789493	rs141008923	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Monocyte count	443,529 European ancestry individuals	NA	5q14.2		rs141008923-?	NR	3E-11		0.113717	[0.078-0.149] unit increase	NR [9800000] (imputed)	N
1216	chr5	82789492	82789493	rs141008923	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	5q14.2	NR	rs141008923-G	0.99651	2E-10		0.103598	[0.072-0.135] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1216	chr5	82789646	82789647	rs4470745	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs4470745-?		7E-20	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
1216	chr5	82789646	82789647	rs4470745	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs4470745-?		2E-8	(External capsule )			NR [8955960] (imputed)	N
1216	chr5	82789646	82789647	rs4470745	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs4470745-?		2E-16	(Retrolenticular part of internal capsule)			NR [8955960] (imputed)	N
1216	chr5	82789646	82789647	rs4470745	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs4470745-?		1E-22	(Anterior corona radiata)			NR [8955960] (imputed)	N
1216	chr5	82789646	82789647	rs4470745	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs4470745-?		6E-9	(External capsule )			NR [8955960] (imputed)	N
1216	chr5	82789646	82789647	rs4470745	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs4470745-?		5E-23	(Anterior corona radiata)			NR [8955960] (imputed)	N
1216	chr5	82789646	82789647	rs4470745	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs4470745-?		2E-15	(Retrolenticular part of internal capsule)			NR [8955960] (imputed)	N
1216	chr5	82789646	82789647	rs4470745	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs4470745-?		2E-15	(Genu of corpus callosum)			NR [8955960] (imputed)	N
1216	chr5	82789646	82789647	rs4470745	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs4470745-?		2E-12	(Body of corpus callosum)			NR [8955960] (imputed)	N
1216	chr5	82789646	82789647	rs4470745	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs4470745-?		1E-14	(Cingulate gyrus)			NR [8955960] (imputed)	N
1216	chr5	82789646	82789647	rs4470745	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q14.2	NR	rs4470745-?		5E-12	(Retrolenticular part of internal capsule)			NR [8955960] (imputed)	N
1216	chr5	82789646	82789647	rs4470745	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q14.2	NR	rs4470745-?		3E-15	(Anterior corona radiata)			NR [8955960] (imputed)	N
1216	chr5	82789646	82789647	rs4470745	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs4470745-?		2E-14	(Anterior corona radiata)			NR [8955960] (imputed)	N
1216	chr5	82789646	82789647	rs4470745	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs4470745-?		2E-12	(Average across all tracts)			NR [8955960] (imputed)	N
1216	chr5	82789646	82789647	rs4470745	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs4470745-?		1E-11	(Genu of corpus callosum)			NR [8955960] (imputed)	N
1216	chr5	82790778	82790779	rs35447933	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs35447933-?		5E-10	(Average across all tracts)			NR [8955960] (imputed)	N
1216	chr5	82790778	82790779	rs35447933	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs35447933-?		4E-9	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
1216	chr5	82790778	82790779	rs35447933	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs35447933-?		2E-9	(Uncinate fasciculus)			NR [8955960] (imputed)	N
1216	chr5	82790778	82790779	rs35447933	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs35447933-?		2E-9	(Sagittal stratum)			NR [8955960] (imputed)	N
1216	chr5	82790778	82790779	rs35447933	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs35447933-?		2E-8	(Superior fronto-occipital fasciculus)			NR [8955960] (imputed)	N
1216	chr5	82790778	82790779	rs35447933	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs35447933-?		2E-14	(Anterior corona radiata)			NR [8955960] (imputed)	N
1216	chr5	82790778	82790779	rs35447933	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs35447933-?		1E-9	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
1216	chr5	82790778	82790779	rs35447933	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs35447933-?		1E-8	(Retrolenticular part of internal capsule)			NR [8955960] (imputed)	N
1216	chr5	82790778	82790779	rs35447933	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs35447933-?		1E-10	(Superior corona radiata)			NR [8955960] (imputed)	N
1216	chr5	82790778	82790779	rs35447933	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs35447933-?		9E-10	(Genu of corpus callosum)			NR [8955960] (imputed)	N
1216	chr5	82790778	82790779	rs35447933	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs35447933-?		8E-10	(Sagittal stratum)			NR [8955960] (imputed)	N
1216	chr5	82790778	82790779	rs35447933	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs35447933-?		8E-10	(Retrolenticular part of internal capsule)			NR [8955960] (imputed)	N
1216	chr5	82790778	82790779	rs35447933	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs35447933-?		5E-8	(Body of corpus callosum)			NR [8955960] (imputed)	N
1216	chr5	82790778	82790779	rs35447933	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs35447933-?		4E-9	(Cingulate gyrus)			NR [8955960] (imputed)	N
1216	chr5	82790778	82790779	rs35447933	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs35447933-?		3E-8	(Posterior corona radiata )			NR [8955960] (imputed)	N
1216	chr5	82790778	82790779	rs35447933	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs35447933-?		3E-8	(Fornix (cres) / Stria terminalis)			NR [8955960] (imputed)	N
1216	chr5	82790778	82790779	rs35447933	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs35447933-?		3E-14	(Anterior corona radiata)			NR [8955960] (imputed)	N
1216	chr5	82790778	82790779	rs35447933	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs35447933-?		3E-10	(Superior corona radiata)			NR [8955960] (imputed)	N
1216	chr5	82790778	82790779	rs35447933	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs35447933-?		1E-9	(Average across all tracts)			NR [8955960] (imputed)	N
1216	chr5	82790778	82790779	rs35447933	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs35447933-?		1E-8	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
1216	chr5	82790778	82790779	rs35447933	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs35447933-?		1E-8	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
1216	chr5	82790778	82790779	rs35447933	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs35447933-?		1E-10	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
1216	chr5	82790778	82790779	rs35447933	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q14.2	NR	rs35447933-?		3E-10	(Average across all tracts)			NR [8955960] (imputed)	N
1216	chr5	82790778	82790779	rs35447933	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q14.2	NR	rs35447933-?		1E-10	(Anterior corona radiata)			NR [8955960] (imputed)	N
1216	chr5	82790778	82790779	rs35447933	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs35447933-?		2E-8	(Anterior corona radiata)			NR [8955960] (imputed)	N
1216	chr5	82791813	82791814	rs7732125	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs7732125-?		8E-9	(Anterior corona radiata)			NR [8955960] (imputed)	N
1216	chr5	82791813	82791814	rs7732125	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.2	NR	rs7732125-?		5E-9	(Anterior corona radiata)			NR [8955960] (imputed)	N
1216	chr5	82801724	82801725	rs35483733	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs35483733-?		3E-9	(Retrolenticular part of internal capsule)			NR [8955960] (imputed)	N
1216	chr5	82806971	82806972	rs10473874	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs10473874-?		5E-8	(Superior corona radiata)			NR [8955960] (imputed)	N
1216	chr5	82806971	82806972	rs10473874	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs10473874-?		2E-11	(Anterior corona radiata)			NR [8955960] (imputed)	N
1216	chr5	82806971	82806972	rs10473874	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs10473874-?		1E-11	(Average across all tracts)			NR [8955960] (imputed)	N
1216	chr5	82806971	82806972	rs10473874	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs10473874-?		7E-10	(Cingulate gyrus)			NR [8955960] (imputed)	N
1216	chr5	82806971	82806972	rs10473874	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs10473874-?		6E-9	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
1216	chr5	82806971	82806972	rs10473874	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs10473874-?		5E-12	(Average across all tracts)			NR [8955960] (imputed)	N
1216	chr5	82806971	82806972	rs10473874	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs10473874-?		5E-10	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
1216	chr5	82806971	82806972	rs10473874	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs10473874-?		2E-8	(Sagittal stratum)			NR [8955960] (imputed)	N
1216	chr5	82806971	82806972	rs10473874	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs10473874-?		2E-11	(Anterior corona radiata)			NR [8955960] (imputed)	N
1216	chr5	82806971	82806972	rs10473874	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs10473874-?		1E-8	(Superior corona radiata)			NR [8955960] (imputed)	N
1216	chr5	82806971	82806972	rs10473874	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q14.3	NR	rs10473874-?		5E-9	(Average across all tracts)			NR [8955960] (imputed)	N
1216	chr5	82806971	82806972	rs10473874	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs10473874-?		1E-10	(Average across all tracts)			NR [8955960] (imputed)	N
1216	chr5	82807258	82807259	rs6452541	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs6452541-?		7E-11	(Average across all tracts)			NR [8955960] (imputed)	N
1216	chr5	82807258	82807259	rs6452541	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs6452541-?		4E-8	(Cingulate gyrus)			NR [8955960] (imputed)	N
1216	chr5	82807258	82807259	rs6452541	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs6452541-?		2E-8	(Superior corona radiata)			NR [8955960] (imputed)	N
1216	chr5	82807258	82807259	rs6452541	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs6452541-?		1E-9	(Anterior corona radiata)			NR [8955960] (imputed)	N
1216	chr5	82807258	82807259	rs6452541	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs6452541-?		8E-11	(Average across all tracts)			NR [8955960] (imputed)	N
1216	chr5	82807258	82807259	rs6452541	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs6452541-?		7E-10	(Anterior corona radiata)			NR [8955960] (imputed)	N
1216	chr5	82807258	82807259	rs6452541	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs6452541-?		4E-9	(Cingulate gyrus)			NR [8955960] (imputed)	N
1216	chr5	82807258	82807259	rs6452541	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q14.3	NR	rs6452541-?		2E-9	(Average across all tracts)			NR [8955960] (imputed)	N
1216	chr5	82807258	82807259	rs6452541	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs6452541-?		2E-8	(Average across all tracts)			NR [8955960] (imputed)	N
1216	chr5	82810713	82810714	rs160380	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs160380-?		7E-10	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
1216	chr5	82810883	82810884	rs34580448	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	5q14.3	VCAN	rs34580448-T	0.958811	1E-11		0.0341161	[0.024-0.044] unit increase	Affymetrix [NR] (imputed)	N
1216	chr5	82810883	82810884	rs34580448	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	5q14.3	NR	rs34580448-?	NR	3E-7		0.28001	[0.17-0.39] unit increase	Affymetrix [7794483] (imputed)	N
1216	chr5	82810883	82810884	rs34580448	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	5q14.3	NR	rs34580448-?	NR	2E-6	(female)	0.28367	[0.17-0.4] unit increase	Affymetrix [7794483] (imputed)	N
1216	chr5	82810883	82810884	rs34580448	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Joint mobility (Beighton score)	64,143 European ancestry individuals	NA	5q14.3	VCAN	rs34580448-?	NR	3E-8		0.156	[0.101-0.211] unit increase	Illumina [12039492] (imputed)	N
1216	chr5	82811499	82811500	rs173686	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs173686-?		3E-10	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
1216	chr5	82811499	82811500	rs173686	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs173686-?		7E-11	(Retrolenticular part of internal capsule)			NR [8955960] (imputed)	N
1216	chr5	82811499	82811500	rs173686	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs173686-?		6E-9	(Posterior limb of internal capsule)			NR [8955960] (imputed)	N
1216	chr5	82811499	82811500	rs173686	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs173686-?		3E-12	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
1216	chr5	82811499	82811500	rs173686	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs173686-?		2E-8	(Anterior corona radiata)			NR [8955960] (imputed)	N
1216	chr5	82811832	82811833	rs160183	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs160183-?		6E-9	(Hippocampus )			NR [8955960] (imputed)	N
1216	chr5	82811832	82811833	rs160183	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs160183-?		4E-9	(Retrolenticular part of internal capsule)			NR [8955960] (imputed)	N
1216	chr5	82811832	82811833	rs160183	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs160183-?		4E-8	(Genu of corpus callosum)			NR [8955960] (imputed)	N
1216	chr5	82811832	82811833	rs160183	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs160183-?		3E-14	(Anterior corona radiata)			NR [8955960] (imputed)	N
1216	chr5	82811832	82811833	rs160183	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs160183-?		2E-12	(Uncinate fasciculus)			NR [8955960] (imputed)	N
1216	chr5	82811832	82811833	rs160183	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs160183-?		2E-12	(Sagittal stratum)			NR [8955960] (imputed)	N
1216	chr5	82811832	82811833	rs160183	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs160183-?		2E-12	(Posterior corona radiata )			NR [8955960] (imputed)	N
1216	chr5	82811832	82811833	rs160183	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs160183-?		2E-10	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
1216	chr5	82811832	82811833	rs160183	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs160183-?		2E-10	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
1216	chr5	82811832	82811833	rs160183	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs160183-?		6E-12	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
1216	chr5	82811832	82811833	rs160183	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs160183-?		2E-11	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
1216	chr5	82811832	82811833	rs160183	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs160183-?		2E-10	(Hippocampus )			NR [8955960] (imputed)	N
1216	chr5	82811832	82811833	rs160183	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs160183-?		2E-10	(Genu of corpus callosum)			NR [8955960] (imputed)	N
1216	chr5	82811832	82811833	rs160183	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs160183-?		1E-17	(Average across all tracts)			NR [8955960] (imputed)	N
1216	chr5	82811832	82811833	rs160183	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs160183-?		1E-12	(Sagittal stratum)			NR [8955960] (imputed)	N
1216	chr5	82811832	82811833	rs160183	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs160183-?		1E-10	(Posterior corona radiata )			NR [8955960] (imputed)	N
1216	chr5	82811832	82811833	rs160183	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q14.3	NR	rs160183-?		6E-9	(Sagittal stratum)			NR [8955960] (imputed)	N
1216	chr5	82811832	82811833	rs160183	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q14.3	NR	rs160183-?		3E-10	(Anterior corona radiata)			NR [8955960] (imputed)	N
1216	chr5	82811832	82811833	rs160183	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q14.3	NR	rs160183-?		1E-10	(Posterior corona radiata )			NR [8955960] (imputed)	N
1216	chr5	82811832	82811833	rs160183	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs160183-?		2E-14	(Average across all tracts)			NR [8955960] (imputed)	N
1216	chr5	82812441	82812442	rs308359	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs308359-?		1E-9	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
1216	chr5	82812441	82812442	rs308359	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q14.3	NR	rs308359-?		2E-8	(Anterior corona radiata)			NR [8955960] (imputed)	N
1216	chr5	82815157	82815158	rs115912456	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	5q14.3		rs115912456-G	0.05	5E-38		12.89	z score increase	Affymetrix [9061022] (imputed)	N
1216	chr5	82815157	82815158	rs115912456	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	5q14.3		rs115912456-G	NR	5E-10		0.0364	[0.025-0.048] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
1216	chr5	82815157	82815158	rs115912456	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	5q14.3	VCAN	rs115912456-A	0.9588	4E-34		0.0577	[0.048-0.067] unit decrease	Affymetrix [18391927] (imputed)	N
1216	chr5	82815157	82815158	rs115912456	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	5q14.3	VCAN	rs115912456-A	0.958736	4E-9		0.0281485	[0.019-0.038] unit decrease	Affymetrix [NR] (imputed)	N
1216	chr5	82815157	82815158	rs115912456	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	5q14.3	NR	rs115912456-G	0.0410878	3E-9		0.142276	[0.094-0.19] unit increase	Affymetrix [21375087] (imputed)	N
1216	chr5	82815157	82815158	rs115912456	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	5q14.3	NR	rs115912456-?	NR	3E-15				Affymetrix [~ 8270000] (imputed)	N
1216	chr5	82815157	82815158	rs115912456	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	5q14.3	VCAN	rs115912456-G	0.0400842	8E-21	(females)	0.07563	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1216	chr5	82815157	82815158	rs115912456	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	5q14.3	VCAN	rs115912456-G	0.0400842	1E-21		0.05156	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1216	chr5	82815157	82815158	rs115912456	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	5q14.3	VCAN	rs115912456-G	0.0400842	8E-19	(females)	0.07232	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1216	chr5	82815157	82815158	rs115912456	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	5q14.3	VCAN	rs115912456-G	0.0400842	1E-16		0.04577	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1216	chr5	82815169	82815170	rs61749613	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	5q14.3	NR	rs61749613-G	0.0417049	1E-17		0.142174	[0.11-0.18] unit increase	Affymetrix [17914406] (imputed)	N
1216	chr5	82815407	82815408	rs2287926	28724990	Zillikens MC	2017-07-19	Nat Commun	Large meta-analysis of genome-wide association studies identifies five loci for lean body mass.	Lean body mass	37,450 European ancestry individuals, 842 Old Order Amish individuals	47,227 European ancestry individuals, 380 African American individuals, 8,034 Korean ancestry individuals, 7,834 Indian ancestry individuals	5q14.3	VCAN	rs2287926-?	0.12	5E-7		0.14	[0.081-0.199] unit increase	Affymetrix, Illumina [at least 1912063] (imputed)	N
1216	chr5	82815407	82815408	rs2287926	28724990	Zillikens MC	2017-07-19	Nat Commun	Large meta-analysis of genome-wide association studies identifies five loci for lean body mass.	Appendicular lean mass	27,488 European ancestry individuals, 842 Old Order Amish individuals	42,360 European ancestry individuals, 380 African American individuals, 2,350 Korean ancestry individuals	5q14.3	VCAN	rs2287926-?	0.13	2E-8		0.1	[0.061-0.139] unit increase	Affymetrix, Illumina [at least 1912063] (imputed)	N
1216	chr5	82819118	82819119	rs310518	25194280	Wei Q	2014-09-07	Nat Genet	Genome-wide association study identifies three susceptibility loci for laryngeal squamous cell carcinoma in the Chinese population.	Laryngeal squamous cell carcinoma	993 Chinese ancestry cases, 1,995 Chinese ancestry controls	2,398 Chinese ancestry cases, 2,804 Chinese ancestry controls	5q14.3	VCAN	rs310518-?	0.79	7E-8		1.27	[1.16-1.37]	Affymetrix [662108]	N
1216	chr5	82819184	82819185	rs2541312	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs2541312-?		6E-10	(Genu of corpus callosum)			NR [8955960] (imputed)	N
1216	chr5	82819184	82819185	rs2541312	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs2541312-?		5E-8	(Hippocampus )			NR [8955960] (imputed)	N
1216	chr5	82819184	82819185	rs2541312	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs2541312-?		4E-9	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
1216	chr5	82819184	82819185	rs2541312	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs2541312-?		4E-9	(Posterior corona radiata )			NR [8955960] (imputed)	N
1216	chr5	82819184	82819185	rs2541312	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs2541312-?		4E-11	(Uncinate fasciculus)			NR [8955960] (imputed)	N
1216	chr5	82819184	82819185	rs2541312	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs2541312-?		4E-11	(Sagittal stratum)			NR [8955960] (imputed)	N
1216	chr5	82819184	82819185	rs2541312	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs2541312-?		3E-9	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
1216	chr5	82819184	82819185	rs2541312	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs2541312-?		3E-13	(Anterior corona radiata)			NR [8955960] (imputed)	N
1216	chr5	82819184	82819185	rs2541312	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs2541312-?		1E-12	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
1216	chr5	82819184	82819185	rs2541312	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs2541312-?		8E-17	(Average across all tracts)			NR [8955960] (imputed)	N
1216	chr5	82819184	82819185	rs2541312	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs2541312-?		6E-9	(Retrolenticular part of internal capsule)			NR [8955960] (imputed)	N
1216	chr5	82819184	82819185	rs2541312	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs2541312-?		5E-9	(Posterior corona radiata )			NR [8955960] (imputed)	N
1216	chr5	82819184	82819185	rs2541312	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs2541312-?		5E-11	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
1216	chr5	82819184	82819185	rs2541312	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs2541312-?		5E-10	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
1216	chr5	82819184	82819185	rs2541312	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs2541312-?		3E-11	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
1216	chr5	82819184	82819185	rs2541312	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs2541312-?		2E-11	(Sagittal stratum)			NR [8955960] (imputed)	N
1216	chr5	82819184	82819185	rs2541312	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs2541312-?		2E-11	(Genu of corpus callosum)			NR [8955960] (imputed)	N
1216	chr5	82819184	82819185	rs2541312	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs2541312-?		1E-9	(Hippocampus )			NR [8955960] (imputed)	N
1216	chr5	82819184	82819185	rs2541312	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q14.3	NR	rs2541312-?		4E-9	(Anterior corona radiata)			NR [8955960] (imputed)	N
1216	chr5	82819184	82819185	rs2541312	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q14.3	NR	rs2541312-?		2E-8	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
1216	chr5	82819184	82819185	rs2541312	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs2541312-?		4E-13	(Average across all tracts)			NR [8955960] (imputed)	N
1216	chr5	82819184	82819185	rs2541312	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs2541312-?		3E-8	(Anterior corona radiata)			NR [8955960] (imputed)	N
1216	chr5	82821793	82821794	rs308361	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs308361-?		1E-8	(Retrolenticular part of internal capsule)			NR [8955960] (imputed)	N
1216	chr5	82822036	82822037	rs160184	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs160184-?		9E-17	(Average across all tracts)			NR [8955960] (imputed)	N
1216	chr5	82822036	82822037	rs160184	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs160184-?		6E-14	(Cingulate gyrus)			NR [8955960] (imputed)	N
1216	chr5	82822036	82822037	rs160184	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs160184-?		6E-12	(External capsule )			NR [8955960] (imputed)	N
1216	chr5	82822036	82822037	rs160184	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs160184-?		1E-9	(Inferior fronto-occipital fasciculus)			NR [8955960] (imputed)	N
1216	chr5	82822036	82822037	rs160184	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs160184-?		1E-11	(Superior corona radiata)			NR [8955960] (imputed)	N
1216	chr5	82822036	82822037	rs160184	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs160184-?		5E-16	(Cingulate gyrus)			NR [8955960] (imputed)	N
1216	chr5	82822036	82822037	rs160184	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs160184-?		5E-11	(External capsule )			NR [8955960] (imputed)	N
1216	chr5	82822036	82822037	rs160184	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs160184-?		3E-14	(Anterior corona radiata)			NR [8955960] (imputed)	N
1216	chr5	82822036	82822037	rs160184	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs160184-?		1E-11	(Superior corona radiata)			NR [8955960] (imputed)	N
1216	chr5	82822036	82822037	rs160184	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs160184-?		1E-10	(Inferior fronto-occipital fasciculus)			NR [8955960] (imputed)	N
1216	chr5	82822036	82822037	rs160184	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q14.3	NR	rs160184-?		4E-14	(Average across all tracts)			NR [8955960] (imputed)	N
1216	chr5	82822036	82822037	rs160184	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs160184-?		3E-8	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
1216	chr5	82826555	82826556	rs7732237	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs7732237-?		7E-10	(External capsule )			NR [8955960] (imputed)	N
1216	chr5	82826555	82826556	rs7732237	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs7732237-?		3E-9	(Hippocampus )			NR [8955960] (imputed)	N
1216	chr5	82826555	82826556	rs7732237	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs7732237-?		3E-8	(Cingulate gyrus)			NR [8955960] (imputed)	N
1216	chr5	82826555	82826556	rs7732237	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs7732237-?		1E-9	(Anterior corona radiata)			NR [8955960] (imputed)	N
1216	chr5	82826555	82826556	rs7732237	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs7732237-?		1E-11	(Average across all tracts)			NR [8955960] (imputed)	N
1216	chr5	82826555	82826556	rs7732237	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs7732237-?		6E-9	(Retrolenticular part of internal capsule)			NR [8955960] (imputed)	N
1216	chr5	82826555	82826556	rs7732237	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs7732237-?		3E-11	(Hippocampus )			NR [8955960] (imputed)	N
1216	chr5	82826555	82826556	rs7732237	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs7732237-?		2E-8	(External capsule )			NR [8955960] (imputed)	N
1216	chr5	82826555	82826556	rs7732237	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs7732237-?		2E-8	(Cingulate gyrus)			NR [8955960] (imputed)	N
1216	chr5	82826555	82826556	rs7732237	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs7732237-?		2E-11	(Inferior fronto-occipital fasciculus)			NR [8955960] (imputed)	N
1216	chr5	82826555	82826556	rs7732237	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs7732237-?		2E-11	(Average across all tracts)			NR [8955960] (imputed)	N
1216	chr5	82826555	82826556	rs7732237	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q14.3	NR	rs7732237-?		9E-11	(Average across all tracts)			NR [8955960] (imputed)	N
1216	chr5	82826555	82826556	rs7732237	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q14.3	NR	rs7732237-?		2E-9	(Anterior corona radiata)			NR [8955960] (imputed)	N
1216	chr5	82826555	82826556	rs7732237	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs7732237-?		2E-8	(Average across all tracts)			NR [8955960] (imputed)	N
1216	chr5	82826632	82826633	rs13184707	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs13184707-?		5E-9	(Superior corona radiata)			NR [8955960] (imputed)	N
1216	chr5	82826632	82826633	rs13184707	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs13184707-?		4E-8	(External capsule )			NR [8955960] (imputed)	N
1216	chr5	82826632	82826633	rs13184707	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs13184707-?		3E-8	(Uncinate fasciculus)			NR [8955960] (imputed)	N
1216	chr5	82826632	82826633	rs13184707	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs13184707-?		3E-8	(Sagittal stratum)			NR [8955960] (imputed)	N
1216	chr5	82826632	82826633	rs13184707	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs13184707-?		3E-8	(Cingulate gyrus)			NR [8955960] (imputed)	N
1216	chr5	82826632	82826633	rs13184707	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs13184707-?		2E-9	(Anterior corona radiata)			NR [8955960] (imputed)	N
1216	chr5	82826632	82826633	rs13184707	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs13184707-?		2E-10	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
1216	chr5	82826632	82826633	rs13184707	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs13184707-?		1E-12	(Average across all tracts)			NR [8955960] (imputed)	N
1216	chr5	82826632	82826633	rs13184707	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs13184707-?		9E-9	(Cingulate gyrus)			NR [8955960] (imputed)	N
1216	chr5	82826632	82826633	rs13184707	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs13184707-?		6E-9	(Anterior corona radiata)			NR [8955960] (imputed)	N
1216	chr5	82826632	82826633	rs13184707	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs13184707-?		3E-8	(Sagittal stratum)			NR [8955960] (imputed)	N
1216	chr5	82826632	82826633	rs13184707	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs13184707-?		1E-11	(Average across all tracts)			NR [8955960] (imputed)	N
1216	chr5	82826632	82826633	rs13184707	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q14.3	NR	rs13184707-?		1E-11	(Average across all tracts)			NR [8955960] (imputed)	N
1216	chr5	82826632	82826633	rs13184707	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs13184707-?		2E-8	(Average across all tracts)			NR [8955960] (imputed)	N
1216	chr5	82833390	82833391	rs16900528	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs16900528-?		2E-8	(Inferior fronto-occipital fasciculus)			NR [8955960] (imputed)	N
1217	chr5	82840258	82840259	rs309556	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309556-?		2E-20	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
1217	chr5	82840258	82840259	rs309556	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309556-?		2E-20	(Posterior corona radiata )			NR [8955960] (imputed)	N
1217	chr5	82840258	82840259	rs309556	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309556-?		1E-23	(Average across all tracts)			NR [8955960] (imputed)	N
1217	chr5	82840258	82840259	rs309556	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309556-?		1E-10	(Body of corpus callosum)			NR [8955960] (imputed)	N
1217	chr5	82840258	82840259	rs309556	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309556-?		5E-9	(Posterior limb of internal capsule)			NR [8955960] (imputed)	N
1217	chr5	82840258	82840259	rs309556	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309556-?		4E-25	(Average across all tracts)			NR [8955960] (imputed)	N
1217	chr5	82840258	82840259	rs309556	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309556-?		4E-18	(Hippocampus )			NR [8955960] (imputed)	N
1217	chr5	82840258	82840259	rs309556	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309556-?		1E-10	(Uncinate fasciculus)			NR [8955960] (imputed)	N
1217	chr5	82840258	82840259	rs309556	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309556-?		9E-14	(Posterior corona radiata )			NR [8955960] (imputed)	N
1217	chr5	82840258	82840259	rs309556	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309556-?		1E-15	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
1217	chr5	82840258	82840259	rs309556	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309556-?		9E-21	(Average across all tracts)			NR [8955960] (imputed)	N
1217	chr5	82840258	82840259	rs309556	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309556-?		5E-11	(Superior corona radiata)			NR [8955960] (imputed)	N
1217	chr5	82840258	82840259	rs309556	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309556-?		3E-8	(Hippocampus )			NR [8955960] (imputed)	N
1217	chr5	82840258	82840259	rs309556	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309556-?		3E-17	(Anterior corona radiata)			NR [8955960] (imputed)	N
1217	chr5	82840258	82840259	rs309556	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309556-?		2E-8	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
1217	chr5	82840258	82840259	rs309556	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309556-?		1E-15	(Sagittal stratum)			NR [8955960] (imputed)	N
1217	chr5	82840258	82840259	rs309556	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309556-?		1E-12	(External capsule )			NR [8955960] (imputed)	N
1217	chr5	82841475	82841476	rs695103	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q14.3	NR	rs695103-?		9E-12	(Sagittal stratum)			NR [8955960] (imputed)	N
1217	chr5	82843608	82843609	rs7728751	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	5q14.3		rs7728751-G	0.21	8E-25		10.29	z score increase	Affymetrix [9061022] (imputed)	N
1217	chr5	82843608	82843609	rs7728751	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	5q14.3	NR	rs7728751-G	0.2024	1E-17				NR [9056863] (imputed)	N
1217	chr5	82843608	82843609	rs7728751	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	5q14.3	NR	rs7728751-G	0.2024	1E-17				NR [9056863] (imputed)	N
1217	chr5	82843608	82843609	rs7728751	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	5q14.3	NR	rs7728751-?		3E-14				NR [7428630] (imputed)	N
1217	chr5	82843608	82843609	rs7728751	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	5q14.3	NR	rs7728751-A	0.7889	4E-13	(Caudal Anterior Cingulate)	4.9020576	[3.58-6.22] unit increase	Affymetrix, Illumina [NR]	N
1217	chr5	82843608	82843609	rs7728751	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	5q14.3	NR	rs7728751-A	0.7877	1E-10	(Insula)	9.112574	[6.34-11.89] unit decrease	Affymetrix, Illumina [NR]	N
1217	chr5	82844578	82844579	rs149879035	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs149879035-G	0.988001	7E-10		0.249953	[0.17-0.33] decrease	Affymetrix [11014269] (imputed)	N
1217	chr5	82844727	82844728	rs309596	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (min-P)	26,502 European ancestry individuals	NA	5q14.3	CA14, APH1A, C1orf54, C1orf51, MRPS21, PRPF3, RPRD2, TARS2, ECM1, ADAMTSL4, AL356356.1	rs309596-?		9E-9				NR [7428630] (imputed)	N
1217	chr5	82844727	82844728	rs309596	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (min-P)	26,502 European ancestry individuals	NA	5q14.3	KIF26B	rs309596-?		3E-8				NR [7428630] (imputed)	N
1217	chr5	82844727	82844728	rs309596	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309596-?		8E-9	(Posterior corona radiata )			NR [8955960] (imputed)	N
1217	chr5	82844727	82844728	rs309596	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309596-?		3E-8	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
1217	chr5	82844727	82844728	rs309596	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309596-?		3E-8	(Average across all tracts)			NR [8955960] (imputed)	N
1217	chr5	82844727	82844728	rs309596	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309596-?		1E-8	(Sagittal stratum)			NR [8955960] (imputed)	N
1217	chr5	82844727	82844728	rs309596	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309596-?		1E-8	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
1217	chr5	82844727	82844728	rs309596	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309596-?		7E-9	(Sagittal stratum)			NR [8955960] (imputed)	N
1217	chr5	82844727	82844728	rs309596	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309596-?		3E-8	(External capsule )			NR [8955960] (imputed)	N
1217	chr5	82844727	82844728	rs309596	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309596-?		3E-8	(Average across all tracts)			NR [8955960] (imputed)	N
1217	chr5	82845488	82845489	rs3852186	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	5q14.3	VCAN, XRCC4, HAPLN1	rs3852186-A	0.046	9E-6		3.17	[1.86-5.42]	Illumina [1556551]	N
1217	chr5	82847715	82847716	rs141455341	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs141455341-?		6E-9	(Anterior corona radiata)			NR [8955960] (imputed)	N
1217	chr5	82847715	82847716	rs141455341	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q14.3	NR	rs141455341-?		2E-10	(Average across all tracts)			NR [8955960] (imputed)	N
1217	chr5	82848323	82848324	rs17205951	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs17205951-?		4E-10	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
1217	chr5	82848323	82848324	rs17205951	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs17205951-?		5E-9	(Sagittal stratum)			NR [8955960] (imputed)	N
1217	chr5	82848323	82848324	rs17205951	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs17205951-?		2E-11	(Average across all tracts)			NR [8955960] (imputed)	N
1217	chr5	82848640	82848641	rs78248083	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs78248083-?		3E-9	(Uncinate fasciculus)			NR [8955960] (imputed)	N
1217	chr5	82848640	82848641	rs78248083	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs78248083-?		3E-9	(Sagittal stratum)			NR [8955960] (imputed)	N
1217	chr5	82848640	82848641	rs78248083	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs78248083-?		1E-8	(Retrolenticular part of internal capsule)			NR [8955960] (imputed)	N
1217	chr5	82848640	82848641	rs78248083	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs78248083-?		1E-11	(Average across all tracts)			NR [8955960] (imputed)	N
1217	chr5	82848640	82848641	rs78248083	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs78248083-?		5E-10	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
1217	chr5	82848640	82848641	rs78248083	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs78248083-?		4E-8	(Anterior corona radiata)			NR [8955960] (imputed)	N
1217	chr5	82848640	82848641	rs78248083	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs78248083-?		3E-9	(Retrolenticular part of internal capsule)			NR [8955960] (imputed)	N
1217	chr5	82849674	82849675	rs309591	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309591-?		8E-17	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
1217	chr5	82849674	82849675	rs309591	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309591-?		7E-16	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
1217	chr5	82849674	82849675	rs309591	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309591-?		5E-13	(Cingulate gyrus)			NR [8955960] (imputed)	N
1217	chr5	82849674	82849675	rs309591	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309591-?		2E-8	(Inferior fronto-occipital fasciculus)			NR [8955960] (imputed)	N
1217	chr5	82849674	82849675	rs309591	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309591-?		2E-19	(Anterior corona radiata)			NR [8955960] (imputed)	N
1217	chr5	82849674	82849675	rs309591	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309591-?		2E-11	(External capsule )			NR [8955960] (imputed)	N
1217	chr5	82849674	82849675	rs309591	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309591-?		1E-13	(Superior corona radiata)			NR [8955960] (imputed)	N
1217	chr5	82849674	82849675	rs309591	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309591-?		9E-17	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
1217	chr5	82849674	82849675	rs309591	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309591-?		5E-15	(Genu of corpus callosum)			NR [8955960] (imputed)	N
1217	chr5	82849674	82849675	rs309591	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309591-?		4E-22	(Anterior corona radiata)			NR [8955960] (imputed)	N
1217	chr5	82849674	82849675	rs309591	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309591-?		3E-19	(Superior corona radiata)			NR [8955960] (imputed)	N
1217	chr5	82849674	82849675	rs309591	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309591-?		3E-14	(Body of corpus callosum)			NR [8955960] (imputed)	N
1217	chr5	82849674	82849675	rs309591	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309591-?		2E-23	(Cingulate gyrus)			NR [8955960] (imputed)	N
1217	chr5	82849674	82849675	rs309591	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309591-?		1E-8	(Body of corpus callosum)			NR [8955960] (imputed)	N
1217	chr5	82849674	82849675	rs309591	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309591-?		1E-18	(Average across all tracts)			NR [8955960] (imputed)	N
1217	chr5	82849674	82849675	rs309591	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309591-?		7E-13	(Posterior corona radiata )			NR [8955960] (imputed)	N
1217	chr5	82849674	82849675	rs309591	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309591-?		7E-12	(Genu of corpus callosum)			NR [8955960] (imputed)	N
1217	chr5	82849674	82849675	rs309591	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309591-?		6E-9	(Inferior fronto-occipital fasciculus)			NR [8955960] (imputed)	N
1217	chr5	82849674	82849675	rs309591	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309591-?		2E-8	(Body of corpus callosum)			NR [8955960] (imputed)	N
1217	chr5	82849674	82849675	rs309591	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309591-?		2E-11	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
1217	chr5	82849972	82849973	rs309589	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309589-?		9E-12	(Genu of corpus callosum)			NR [8955960] (imputed)	N
1217	chr5	82849972	82849973	rs309589	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309589-?		5E-17	(Retrolenticular part of internal capsule)			NR [8955960] (imputed)	N
1217	chr5	82849972	82849973	rs309589	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309589-?		4E-20	(Uncinate fasciculus)			NR [8955960] (imputed)	N
1217	chr5	82849972	82849973	rs309589	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309589-?		4E-20	(Sagittal stratum)			NR [8955960] (imputed)	N
1217	chr5	82849972	82849973	rs309589	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309589-?		4E-15	(Hippocampus )			NR [8955960] (imputed)	N
1217	chr5	82849972	82849973	rs309589	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309589-?		2E-8	(Fornix (cres) / Stria terminalis)			NR [8955960] (imputed)	N
1217	chr5	82849972	82849973	rs309589	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309589-?		7E-15	(Inferior fronto-occipital fasciculus)			NR [8955960] (imputed)	N
1217	chr5	82849972	82849973	rs309589	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309589-?		5E-23	(Sagittal stratum)			NR [8955960] (imputed)	N
1217	chr5	82849972	82849973	rs309589	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309589-?		4E-17	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
1217	chr5	82849972	82849973	rs309589	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309589-?		3E-18	(Retrolenticular part of internal capsule)			NR [8955960] (imputed)	N
1217	chr5	82849972	82849973	rs309589	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309589-?		2E-9	(Fornix (cres) / Stria terminalis)			NR [8955960] (imputed)	N
1217	chr5	82849972	82849973	rs309589	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309589-?		2E-21	(Posterior corona radiata )			NR [8955960] (imputed)	N
1217	chr5	82849972	82849973	rs309589	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309589-?		1E-21	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
1217	chr5	82849972	82849973	rs309589	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309589-?		1E-13	(External capsule )			NR [8955960] (imputed)	N
1217	chr5	82849972	82849973	rs309589	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309589-?		6E-10	(Anterior corona radiata)			NR [8955960] (imputed)	N
1217	chr5	82849972	82849973	rs309589	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309589-?		1E-9	(Retrolenticular part of internal capsule)			NR [8955960] (imputed)	N
1217	chr5	82849972	82849973	rs309589	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309589-?		1E-11	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
1217	chr5	82849972	82849973	rs309589	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309589-?		1E-11	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
1217	chr5	82849972	82849973	rs309589	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309589-?		2E-9	(Cingulate gyrus)			NR [8955960] (imputed)	N
1217	chr5	82852513	82852514	rs61523168	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs61523168-?		3E-10	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
1217	chr5	82852513	82852514	rs61523168	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs61523168-?		3E-9	(Hippocampus )			NR [8955960] (imputed)	N
1217	chr5	82852513	82852514	rs61523168	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q14.3	NR	rs61523168-?		1E-9	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
1217	chr5	82852577	82852578	rs309588	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 2)	19,670 European ancestry individuals	NA	5q14.3		rs309588-?	NR	7E-17				NR [9705931] (imputed)	N
1217	chr5	82852577	82852578	rs309588	32963231	Hofer E	2020-09-22	Nat Commun	Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.	Cortical volume	22,824 European and African American ancestry individuals	NA	5q14.3	VCAN	rs309588-?		3E-10	(Caudal anterior cingulate)			Affymetrix, Illumina [NR] (imputed)	N
1217	chr5	82852577	82852578	rs309588	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309588-?		2E-8	(Cingulate gyrus)			NR [8955960] (imputed)	N
1217	chr5	82852577	82852578	rs309588	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309588-?		2E-8	(Anterior corona radiata)			NR [8955960] (imputed)	N
1217	chr5	82853208	82853209	rs310528	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	5q14.3	VCAN	rs310528-?		2E-17				NR [7428630] (imputed)	N
1217	chr5	82853208	82853209	rs310528	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs310528-?		4E-9	(Body of corpus callosum)			NR [8955960] (imputed)	N
1217	chr5	82856518	82856519	rs309587	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical thickness (min-P)	26,502 European ancestry individuals	NA	5q14.3	C1orf210, TIE1, MPL, CDC20, ELOVL1, MED8, SZT2, HYI	rs309587-?		3E-8				NR [7428630] (imputed)	N
1217	chr5	82856518	82856519	rs309587	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309587-?		9E-22	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
1217	chr5	82856518	82856519	rs309587	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309587-?		9E-14	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
1217	chr5	82856518	82856519	rs309587	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309587-?		9E-11	(Superior corona radiata)			NR [8955960] (imputed)	N
1217	chr5	82856518	82856519	rs309587	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309587-?		8E-18	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
1217	chr5	82856518	82856519	rs309587	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309587-?		7E-18	(Posterior corona radiata )			NR [8955960] (imputed)	N
1217	chr5	82856518	82856519	rs309587	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309587-?		5E-11	(Cingulate gyrus)			NR [8955960] (imputed)	N
1217	chr5	82856518	82856519	rs309587	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309587-?		4E-17	(Uncinate fasciculus)			NR [8955960] (imputed)	N
1217	chr5	82856518	82856519	rs309587	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309587-?		4E-17	(Sagittal stratum)			NR [8955960] (imputed)	N
1217	chr5	82856518	82856519	rs309587	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309587-?		4E-12	(Genu of corpus callosum)			NR [8955960] (imputed)	N
1217	chr5	82856518	82856519	rs309587	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309587-?		2E-13	(Hippocampus )			NR [8955960] (imputed)	N
1217	chr5	82856518	82856519	rs309587	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309587-?		1E-20	(Average across all tracts)			NR [8955960] (imputed)	N
1217	chr5	82856518	82856519	rs309587	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309587-?		1E-17	(Anterior corona radiata)			NR [8955960] (imputed)	N
1217	chr5	82856518	82856519	rs309587	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309587-?		1E-16	(Retrolenticular part of internal capsule)			NR [8955960] (imputed)	N
1217	chr5	82856518	82856519	rs309587	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309587-?		9E-19	(Cingulate gyrus)			NR [8955960] (imputed)	N
1217	chr5	82856518	82856519	rs309587	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309587-?		8E-10	(External capsule )			NR [8955960] (imputed)	N
1217	chr5	82856518	82856519	rs309587	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309587-?		6E-17	(Posterior corona radiata )			NR [8955960] (imputed)	N
1217	chr5	82856518	82856519	rs309587	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309587-?		5E-21	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
1217	chr5	82856518	82856519	rs309587	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309587-?		5E-14	(Superior corona radiata)			NR [8955960] (imputed)	N
1217	chr5	82856518	82856519	rs309587	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309587-?		4E-20	(Sagittal stratum)			NR [8955960] (imputed)	N
1217	chr5	82856518	82856519	rs309587	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309587-?		4E-12	(Inferior fronto-occipital fasciculus)			NR [8955960] (imputed)	N
1217	chr5	82856518	82856519	rs309587	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309587-?		3E-9	(Body of corpus callosum)			NR [8955960] (imputed)	N
1217	chr5	82856518	82856519	rs309587	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309587-?		2E-8	(Fornix (cres) / Stria terminalis)			NR [8955960] (imputed)	N
1217	chr5	82856518	82856519	rs309587	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309587-?		2E-19	(Anterior corona radiata)			NR [8955960] (imputed)	N
1217	chr5	82856518	82856519	rs309587	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309587-?		2E-15	(Hippocampus )			NR [8955960] (imputed)	N
1217	chr5	82856518	82856519	rs309587	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309587-?		2E-10	(Uncinate fasciculus)			NR [8955960] (imputed)	N
1217	chr5	82856518	82856519	rs309587	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309587-?		1E-21	(Average across all tracts)			NR [8955960] (imputed)	N
1217	chr5	82856518	82856519	rs309587	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309587-?		1E-17	(Retrolenticular part of internal capsule)			NR [8955960] (imputed)	N
1217	chr5	82856518	82856519	rs309587	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309587-?		1E-15	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
1217	chr5	82856518	82856519	rs309587	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309587-?		1E-15	(Genu of corpus callosum)			NR [8955960] (imputed)	N
1217	chr5	82856518	82856519	rs309587	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309587-?		1E-13	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
1217	chr5	82856518	82856519	rs309587	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309587-?		8E-13	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
1217	chr5	82856518	82856519	rs309587	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309587-?		7E-14	(Posterior corona radiata )			NR [8955960] (imputed)	N
1217	chr5	82856518	82856519	rs309587	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309587-?		5E-11	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
1217	chr5	82856518	82856519	rs309587	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309587-?		4E-17	(Average across all tracts)			NR [8955960] (imputed)	N
1217	chr5	82856518	82856519	rs309587	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309587-?		4E-16	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
1217	chr5	82856518	82856519	rs309587	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309587-?		2E-8	(Uncinate fasciculus)			NR [8955960] (imputed)	N
1217	chr5	82856518	82856519	rs309587	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309587-?		2E-10	(Sagittal stratum)			NR [8955960] (imputed)	N
1217	chr5	82856518	82856519	rs309587	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309587-?		2E-10	(Anterior corona radiata)			NR [8955960] (imputed)	N
1217	chr5	82856518	82856519	rs309587	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309587-?		1E-10	(Retrolenticular part of internal capsule)			NR [8955960] (imputed)	N
1217	chr5	82856518	82856519	rs309587	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309587-?		8E-9	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
1217	chr5	82856518	82856519	rs309587	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309587-?		8E-10	(Inferior fronto-occipital fasciculus)			NR [8955960] (imputed)	N
1217	chr5	82856518	82856519	rs309587	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309587-?		4E-12	(Genu of corpus callosum)			NR [8955960] (imputed)	N
1217	chr5	82856518	82856519	rs309587	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309587-?		4E-10	(External capsule )			NR [8955960] (imputed)	N
1217	chr5	82856518	82856519	rs309587	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309587-?		3E-17	(Average across all tracts)			NR [8955960] (imputed)	N
1217	chr5	82856518	82856519	rs309587	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309587-?		3E-13	(Anterior corona radiata)			NR [8955960] (imputed)	N
1217	chr5	82856518	82856519	rs309587	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309587-?		2E-8	(Posterior corona radiata )			NR [8955960] (imputed)	N
1217	chr5	82856518	82856519	rs309587	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309587-?		1E-13	(Sagittal stratum)			NR [8955960] (imputed)	N
1217	chr5	82856712	82856713	rs3931702	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs3931702-?		8E-12	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
1217	chr5	82856712	82856713	rs3931702	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs3931702-?		5E-10	(Anterior corona radiata)			NR [8955960] (imputed)	N
1217	chr5	82856712	82856713	rs3931702	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs3931702-?		4E-9	(Superior corona radiata)			NR [8955960] (imputed)	N
1217	chr5	82856712	82856713	rs3931702	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs3931702-?		2E-11	(Retrolenticular part of internal capsule)			NR [8955960] (imputed)	N
1217	chr5	82856712	82856713	rs3931702	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs3931702-?		2E-11	(Average across all tracts)			NR [8955960] (imputed)	N
1217	chr5	82856712	82856713	rs3931702	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs3931702-?		1E-9	(Uncinate fasciculus)			NR [8955960] (imputed)	N
1217	chr5	82856712	82856713	rs3931702	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs3931702-?		1E-9	(Sagittal stratum)			NR [8955960] (imputed)	N
1217	chr5	82856712	82856713	rs3931702	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs3931702-?		1E-8	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
1217	chr5	82856712	82856713	rs3931702	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs3931702-?		1E-12	(Posterior corona radiata )			NR [8955960] (imputed)	N
1217	chr5	82856712	82856713	rs3931702	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs3931702-?		7E-10	(Sagittal stratum)			NR [8955960] (imputed)	N
1217	chr5	82856712	82856713	rs3931702	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs3931702-?		5E-9	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
1217	chr5	82856712	82856713	rs3931702	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs3931702-?		5E-12	(Average across all tracts)			NR [8955960] (imputed)	N
1217	chr5	82856712	82856713	rs3931702	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs3931702-?		5E-11	(Retrolenticular part of internal capsule)			NR [8955960] (imputed)	N
1217	chr5	82856712	82856713	rs3931702	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs3931702-?		4E-11	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
1217	chr5	82856712	82856713	rs3931702	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs3931702-?		2E-9	(Cingulate gyrus)			NR [8955960] (imputed)	N
1217	chr5	82856712	82856713	rs3931702	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs3931702-?		1E-9	(Anterior corona radiata)			NR [8955960] (imputed)	N
1217	chr5	82856712	82856713	rs3931702	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs3931702-?		1E-10	(Posterior corona radiata )			NR [8955960] (imputed)	N
1217	chr5	82856712	82856713	rs3931702	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q14.3	NR	rs3931702-?		9E-11	(Posterior corona radiata )			NR [8955960] (imputed)	N
1217	chr5	82856712	82856713	rs3931702	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q14.3	NR	rs3931702-?		6E-10	(Average across all tracts)			NR [8955960] (imputed)	N
1217	chr5	82856712	82856713	rs3931702	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q14.3	NR	rs3931702-?		5E-8	(Retrolenticular part of internal capsule)			NR [8955960] (imputed)	N
1217	chr5	82856712	82856713	rs3931702	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q14.3	NR	rs3931702-?		4E-9	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
1217	chr5	82856712	82856713	rs3931702	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs3931702-?		9E-10	(Average across all tracts)			NR [8955960] (imputed)	N
1217	chr5	82857499	82857500	rs78483393	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs78483393-?		4E-10	(Hippocampus )			NR [8955960] (imputed)	N
1217	chr5	82857499	82857500	rs78483393	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs78483393-?		4E-10	(Average across all tracts)			NR [8955960] (imputed)	N
1217	chr5	82857499	82857500	rs78483393	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs78483393-?		1E-9	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
1217	chr5	82857499	82857500	rs78483393	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs78483393-?		6E-10	(Inferior fronto-occipital fasciculus)			NR [8955960] (imputed)	N
1217	chr5	82857499	82857500	rs78483393	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs78483393-?		2E-11	(Hippocampus )			NR [8955960] (imputed)	N
1217	chr5	82857499	82857500	rs78483393	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs78483393-?		2E-10	(Average across all tracts)			NR [8955960] (imputed)	N
1217	chr5	82857499	82857500	rs78483393	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q14.3	NR	rs78483393-?		4E-8	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
1217	chr5	82857499	82857500	rs78483393	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q14.3	NR	rs78483393-?		3E-8	(Average across all tracts)			NR [8955960] (imputed)	N
1217	chr5	82857499	82857500	rs78483393	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs78483393-?		2E-8	(Average across all tracts)			NR [8955960] (imputed)	N
1217	chr5	82857869	82857870	rs7733216	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs7733216-?		2E-21	(Superior corona radiata)			NR [8955960] (imputed)	N
1217	chr5	82857869	82857870	rs7733216	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs7733216-?		1E-13	(Inferior fronto-occipital fasciculus)			NR [8955960] (imputed)	N
1217	chr5	82857869	82857870	rs7733216	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs7733216-?		6E-22	(Inferior fronto-occipital fasciculus)			NR [8955960] (imputed)	N
1217	chr5	82857869	82857870	rs7733216	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q14.3	NR	rs7733216-?		5E-17	(Anterior corona radiata)			NR [8955960] (imputed)	N
1217	chr5	82857869	82857870	rs7733216	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q14.3	NR	rs7733216-?		2E-16	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
1217	chr5	82857869	82857870	rs7733216	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs7733216-?		1E-8	(Uncinate fasciculus)			NR [8955960] (imputed)	N
1217	chr5	82857869	82857870	rs7733216	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	5q14.3		rs7733216-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1217	chr5	82858827	82858828	rs12653308	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs12653308-?		2E-9	(Body of corpus callosum)			NR [8955960] (imputed)	N
1217	chr5	82858827	82858828	rs12653308	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs12653308-?		2E-16	(Genu of corpus callosum)			NR [8955960] (imputed)	N
1217	chr5	82859064	82859065	rs17205972	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume (adjusted for hypertension)	46,055 European ancestry individuals, 2,469 African American individuals	NA	5q14.3	VCAN	rs17205972-T	NR	2E-12		0.0505	[0.036-0.065] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1217	chr5	82859064	82859065	rs17205972	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	48,454 European ancestry individuals	NA	5q14.3	VCAN	rs17205972-T	NR	1E-11		0.0477	[0.034-0.061] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1217	chr5	82859064	82859065	rs17205972	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	2,516 African American individuals, 48,454 European ancestry individuals	NA	5q14.3	VCAN	rs17205972-T	0.1986	5E-12		0.0492	[0.035-0.063] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1217	chr5	82859064	82859065	rs17205972	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical thickness (MOSTest)	26,502 European ancestry individuals	NA	5q14.3	TAGLN2, IGSF9	rs17205972-?		5E-8				NR [7428630] (imputed)	N
1217	chr5	82859064	82859065	rs17205972	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs17205972-?		5E-24	(Cingulate gyrus)			NR [8955960] (imputed)	N
1217	chr5	82859064	82859065	rs17205972	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs17205972-?		2E-20	(Genu of corpus callosum)			NR [8955960] (imputed)	N
1217	chr5	82859064	82859065	rs17205972	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs17205972-?		3E-30	(Cingulate gyrus)			NR [8955960] (imputed)	N
1217	chr5	82859064	82859065	rs17205972	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs17205972-?		2E-24	(Genu of corpus callosum)			NR [8955960] (imputed)	N
1217	chr5	82859064	82859065	rs17205972	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q14.3	NR	rs17205972-?		7E-11	(Cingulate gyrus)			NR [8955960] (imputed)	N
1217	chr5	82859484	82859485	rs160283	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q14.3	NR	rs160283-?		2E-8	(Posterior corona radiata )			NR [8955960] (imputed)	N
1217	chr5	82859720	82859721	rs160282	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs160282-?		4E-8	(Average across all tracts)			NR [8955960] (imputed)	N
1217	chr5	82859720	82859721	rs160282	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs160282-?		9E-9	(Average across all tracts)			NR [8955960] (imputed)	N
1217	chr5	82860024	82860025	rs10052710	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	5q14.3	NCKAP5	rs10052710-?		1E-11				NR [7428630] (imputed)	N
1217	chr5	82860024	82860025	rs10052710	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs10052710-?		8E-36	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
1217	chr5	82860024	82860025	rs10052710	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs10052710-?		6E-33	(Uncinate fasciculus)			NR [8955960] (imputed)	N
1217	chr5	82860024	82860025	rs10052710	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs10052710-?		6E-33	(Sagittal stratum)			NR [8955960] (imputed)	N
1217	chr5	82860024	82860025	rs10052710	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs10052710-?		5E-27	(Retrolenticular part of internal capsule)			NR [8955960] (imputed)	N
1217	chr5	82860024	82860025	rs10052710	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs10052710-?		4E-23	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
1217	chr5	82860024	82860025	rs10052710	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs10052710-?		3E-37	(Average across all tracts)			NR [8955960] (imputed)	N
1217	chr5	82860024	82860025	rs10052710	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs10052710-?		3E-27	(Posterior corona radiata )			NR [8955960] (imputed)	N
1217	chr5	82860024	82860025	rs10052710	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs10052710-?		2E-29	(Anterior corona radiata)			NR [8955960] (imputed)	N
1217	chr5	82860024	82860025	rs10052710	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs10052710-?		9E-24	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
1217	chr5	82860024	82860025	rs10052710	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs10052710-?		5E-29	(Retrolenticular part of internal capsule)			NR [8955960] (imputed)	N
1217	chr5	82860024	82860025	rs10052710	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs10052710-?		3E-28	(Posterior corona radiata )			NR [8955960] (imputed)	N
1217	chr5	82860024	82860025	rs10052710	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs10052710-?		2E-35	(Sagittal stratum)			NR [8955960] (imputed)	N
1217	chr5	82860024	82860025	rs10052710	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs10052710-?		2E-32	(Anterior corona radiata)			NR [8955960] (imputed)	N
1217	chr5	82860024	82860025	rs10052710	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs10052710-?		1E-37	(Average across all tracts)			NR [8955960] (imputed)	N
1217	chr5	82860024	82860025	rs10052710	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs10052710-?		1E-36	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
1217	chr5	82860024	82860025	rs10052710	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs10052710-?		1E-17	(External capsule )			NR [8955960] (imputed)	N
1217	chr5	82860024	82860025	rs10052710	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs10052710-?		1E-12	(Posterior limb of internal capsule)			NR [8955960] (imputed)	N
1217	chr5	82860024	82860025	rs10052710	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q14.3	NR	rs10052710-?		5E-28	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
1217	chr5	82860024	82860025	rs10052710	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs10052710-?		9E-12	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
1217	chr5	82860024	82860025	rs10052710	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs10052710-?		8E-12	(Inferior fronto-occipital fasciculus)			NR [8955960] (imputed)	N
1217	chr5	82860024	82860025	rs10052710	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs10052710-?		7E-20	(Sagittal stratum)			NR [8955960] (imputed)	N
1217	chr5	82860024	82860025	rs10052710	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs10052710-?		6E-28	(Average across all tracts)			NR [8955960] (imputed)	N
1217	chr5	82860024	82860025	rs10052710	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs10052710-?		4E-13	(External capsule )			NR [8955960] (imputed)	N
1217	chr5	82860024	82860025	rs10052710	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs10052710-?		4E-11	(Retrolenticular part of internal capsule)			NR [8955960] (imputed)	N
1217	chr5	82860024	82860025	rs10052710	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs10052710-?		3E-15	(Posterior corona radiata )			NR [8955960] (imputed)	N
1217	chr5	82860024	82860025	rs10052710	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs10052710-?		2E-15	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
1217	chr5	82860024	82860025	rs10052710	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs10052710-?		1E-21	(Anterior corona radiata)			NR [8955960] (imputed)	N
1217	chr5	82860347	82860348	rs13176921	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs13176921-?		3E-8	(Superior corona radiata)			NR [8955960] (imputed)	N
1217	chr5	82860379	82860380	rs17205986	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs17205986-?		8E-9	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
1217	chr5	82860379	82860380	rs17205986	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs17205986-?		5E-9	(Hippocampus )			NR [8955960] (imputed)	N
1217	chr5	82860379	82860380	rs17205986	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs17205986-?		5E-8	(External capsule )			NR [8955960] (imputed)	N
1217	chr5	82860379	82860380	rs17205986	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs17205986-?		4E-11	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
1217	chr5	82860379	82860380	rs17205986	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs17205986-?		3E-9	(Uncinate fasciculus)			NR [8955960] (imputed)	N
1217	chr5	82860379	82860380	rs17205986	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs17205986-?		3E-9	(Sagittal stratum)			NR [8955960] (imputed)	N
1217	chr5	82860379	82860380	rs17205986	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs17205986-?		3E-8	(Retrolenticular part of internal capsule)			NR [8955960] (imputed)	N
1217	chr5	82860379	82860380	rs17205986	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs17205986-?		3E-8	(Genu of corpus callosum)			NR [8955960] (imputed)	N
1217	chr5	82860379	82860380	rs17205986	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs17205986-?		3E-13	(Average across all tracts)			NR [8955960] (imputed)	N
1217	chr5	82860379	82860380	rs17205986	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs17205986-?		3E-10	(Cingulate gyrus)			NR [8955960] (imputed)	N
1217	chr5	82860379	82860380	rs17205986	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs17205986-?		2E-10	(Anterior corona radiata)			NR [8955960] (imputed)	N
1217	chr5	82860379	82860380	rs17205986	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs17205986-?		9E-9	(Retrolenticular part of internal capsule)			NR [8955960] (imputed)	N
1217	chr5	82860379	82860380	rs17205986	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs17205986-?		9E-10	(Anterior corona radiata)			NR [8955960] (imputed)	N
1217	chr5	82860379	82860380	rs17205986	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs17205986-?		7E-13	(Average across all tracts)			NR [8955960] (imputed)	N
1217	chr5	82860379	82860380	rs17205986	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs17205986-?		6E-11	(Hippocampus )			NR [8955960] (imputed)	N
1217	chr5	82860379	82860380	rs17205986	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs17205986-?		4E-9	(Sagittal stratum)			NR [8955960] (imputed)	N
1217	chr5	82860379	82860380	rs17205986	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs17205986-?		3E-10	(Inferior fronto-occipital fasciculus)			NR [8955960] (imputed)	N
1217	chr5	82860379	82860380	rs17205986	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs17205986-?		2E-9	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
1217	chr5	82860379	82860380	rs17205986	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs17205986-?		1E-8	(Cingulate gyrus)			NR [8955960] (imputed)	N
1217	chr5	82860379	82860380	rs17205986	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q14.3	NR	rs17205986-?		4E-8	(Anterior corona radiata)			NR [8955960] (imputed)	N
1217	chr5	82860379	82860380	rs17205986	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q14.3	NR	rs17205986-?		1E-9	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
1217	chr5	82860379	82860380	rs17205986	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q14.3	NR	rs17205986-?		1E-11	(Average across all tracts)			NR [8955960] (imputed)	N
1217	chr5	82860379	82860380	rs17205986	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs17205986-?		4E-9	(Average across all tracts)			NR [8955960] (imputed)	N
1217	chr5	82860484	82860485	rs67827860	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	5q14.3		rs67827860-T	0.2	1E-33		12.09	z score increase	Affymetrix [9061022] (imputed)	N
1217	chr5	82860484	82860485	rs67827860	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Periventricular white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	5q14.3	VCAN:VCAN-AS1	rs67827860-T	0.1933	4E-6		0.0332	[0.019-0.047] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1217	chr5	82860484	82860485	rs67827860	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs67827860-?		1E-16	(External capsule )			NR [8955960] (imputed)	N
1217	chr5	82860484	82860485	rs67827860	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q14.3	NR	rs67827860-?		6E-21	(Sagittal stratum)			NR [8955960] (imputed)	N
1217	chr5	82860484	82860485	rs67827860	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs67827860-?		5E-12	(Hippocampus )			NR [8955960] (imputed)	N
1217	chr5	82860484	82860485	rs67827860	29752348	Rutten-Jacobs LCA	2018-05-11	Stroke	Genetic Study of White Matter Integrity in UK Biobank (N=8448) and the Overlap With Stroke, Depression, and Dementia.	White matter integrity (fractional anisotropy)	8,239 European ancestry individuals	NA	5q14.3	VCAN	rs67827860-T	0.19	1E-14		0.611	[0.46-0.77] unit decrease	Affymetrix [up to 39131578] (imputed)	N
1217	chr5	82860484	82860485	rs67827860	29752348	Rutten-Jacobs LCA	2018-05-11	Stroke	Genetic Study of White Matter Integrity in UK Biobank (N=8448) and the Overlap With Stroke, Depression, and Dementia.	White matter hyperintensity volume	8,429 European ancestry individuals	NA	5q14.3	VCAN	rs67827860-?	NR	3E-6				Affymetrix [up to 39131578] (imputed)	N
1217	chr5	82860499	82860500	rs66852704	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs66852704-?		3E-23	(Hippocampus )			NR [8955960] (imputed)	N
1217	chr5	82860499	82860500	rs66852704	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs66852704-?		4E-27	(Hippocampus )			NR [8955960] (imputed)	N
1217	chr5	82860499	82860500	rs66852704	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q14.3	NR	rs66852704-?		2E-9	(Hippocampus )			NR [8955960] (imputed)	N
1217	chr5	82861251	82861255	rs72284621	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs72284621-?		7E-32	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
1217	chr5	82861251	82861255	rs72284621	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs72284621-?		4E-12	(Posterior limb of internal capsule)			NR [8955960] (imputed)	N
1217	chr5	82861251	82861255	rs72284621	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs72284621-?		3E-15	(Fornix (cres) / Stria terminalis)			NR [8955960] (imputed)	N
1217	chr5	82861251	82861255	rs72284621	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs72284621-?		5E-18	(Fornix (cres) / Stria terminalis)			NR [8955960] (imputed)	N
1217	chr5	82861251	82861255	rs72284621	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs72284621-?		1E-25	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
1217	chr5	82861251	82861255	rs72284621	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q14.3	NR	rs72284621-?		9E-24	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
1217	chr5	82861251	82861255	rs72284621	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q14.3	NR	rs72284621-?		7E-17	(Retrolenticular part of internal capsule)			NR [8955960] (imputed)	N
1217	chr5	82861251	82861255	rs72284621	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q14.3	NR	rs72284621-?		2E-8	(Superior corona radiata)			NR [8955960] (imputed)	N
1217	chr5	82861251	82861255	rs72284621	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q14.3	NR	rs72284621-?		2E-12	(External capsule )			NR [8955960] (imputed)	N
1217	chr5	82861251	82861255	rs72284621	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q14.3	NR	rs72284621-?		2E-10	(Anterior limb of internal capsule)			NR [8955960] (imputed)	N
1217	chr5	82861251	82861255	rs72284621	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q14.3	NR	rs72284621-?		1E-19	(Posterior corona radiata )			NR [8955960] (imputed)	N
1217	chr5	82861290	82861291	rs115416593	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs115416593-?		1E-8	(Retrolenticular part of internal capsule)			NR [8955960] (imputed)	N
1217	chr5	82861399	82861400	rs13164785	29752348	Rutten-Jacobs LCA	2018-05-11	Stroke	Genetic Study of White Matter Integrity in UK Biobank (N=8448) and the Overlap With Stroke, Depression, and Dementia.	White matter integrity (mean diffusivity)	8,239 European ancestry individuals	NA	5q14.3	VCAN	rs13164785-G	0.19	4E-18		0.674	[0.52-0.82] unit increase	Affymetrix [up to 39131578] (imputed)	N
1217	chr5	82861399	82861400	rs13164785	29752348	Rutten-Jacobs LCA	2018-05-11	Stroke	Genetic Study of White Matter Integrity in UK Biobank (N=8448) and the Overlap With Stroke, Depression, and Dementia.	White matter hyperintensity volume	8,429 European ancestry individuals	NA	5q14.3	VCAN	rs13164785-?	NR	4E-6				Affymetrix [up to 39131578] (imputed)	N
1217	chr5	82862328	82862328	rs35544841	32358547	Persyn E	2020-05-01	Nat Commun	Genome-wide association study of MRI markers of cerebral small vessel disease in 42,310 participants.	White matter integrity (mean diffusivity)	17,467 European ancestry individuals	NA	5q14.3	VCAN	rs35544841-GA	0.196763	2E-34		0.668794	[0.56-0.78] unit increase	Affymetrix [NR] (imputed)	N
1217	chr5	82862328	82862328	rs35544841	32358547	Persyn E	2020-05-01	Nat Commun	Genome-wide association study of MRI markers of cerebral small vessel disease in 42,310 participants.	White matter integrity (fractional anisotropy)	17,663 European ancestry individuals	NA	5q14.3	VCAN	rs35544841-GA	0.197001	3E-25		0.555582	[0.45-0.66] unit decrease	Affymetrix [NR] (imputed)	N
1217	chr5	82862328	82862328	rs35544841	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs35544841-?		7E-11	(Anterior limb of internal capsule)			NR [8955960] (imputed)	N
1217	chr5	82862328	82862328	rs35544841	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs35544841-?		1E-14	(Body of corpus callosum)			NR [8955960] (imputed)	N
1217	chr5	82862328	82862328	rs35544841	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs35544841-?		1E-12	(Superior fronto-occipital fasciculus)			NR [8955960] (imputed)	N
1217	chr5	82862328	82862328	rs35544841	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs35544841-?		8E-23	(Superior corona radiata)			NR [8955960] (imputed)	N
1217	chr5	82862328	82862328	rs35544841	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs35544841-?		8E-18	(Body of corpus callosum)			NR [8955960] (imputed)	N
1217	chr5	82862328	82862328	rs35544841	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs35544841-?		5E-17	(Uncinate fasciculus)			NR [8955960] (imputed)	N
1217	chr5	82862328	82862328	rs35544841	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs35544841-?		4E-8	(Anterior limb of internal capsule)			NR [8955960] (imputed)	N
1217	chr5	82862328	82862328	rs35544841	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs35544841-?		1E-10	(Superior fronto-occipital fasciculus)			NR [8955960] (imputed)	N
1217	chr5	82862328	82862328	rs35544841	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q14.3	NR	rs35544841-?		7E-11	(Uncinate fasciculus)			NR [8955960] (imputed)	N
1217	chr5	82862328	82862328	rs35544841	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q14.3	NR	rs35544841-?		6E-14	(Genu of corpus callosum)			NR [8955960] (imputed)	N
1217	chr5	82862328	82862328	rs35544841	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q14.3	NR	rs35544841-?		2E-32	(Average across all tracts)			NR [8955960] (imputed)	N
1217	chr5	82862328	82862328	rs35544841	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q14.3	NR	rs35544841-?		1E-12	(Body of corpus callosum)			NR [8955960] (imputed)	N
1217	chr5	82863335	82863336	rs34953090	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs34953090-?		9E-9	(External capsule )			NR [8955960] (imputed)	N
1217	chr5	82863335	82863336	rs34953090	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs34953090-?		9E-16	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
1217	chr5	82863335	82863336	rs34953090	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs34953090-?		7E-13	(Retrolenticular part of internal capsule)			NR [8955960] (imputed)	N
1217	chr5	82863335	82863336	rs34953090	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs34953090-?		5E-12	(Superior corona radiata)			NR [8955960] (imputed)	N
1217	chr5	82863335	82863336	rs34953090	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs34953090-?		4E-8	(Genu of corpus callosum)			NR [8955960] (imputed)	N
1217	chr5	82863335	82863336	rs34953090	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs34953090-?		3E-11	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
1217	chr5	82863335	82863336	rs34953090	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs34953090-?		2E-15	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
1217	chr5	82863335	82863336	rs34953090	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs34953090-?		2E-12	(Anterior corona radiata)			NR [8955960] (imputed)	N
1217	chr5	82863335	82863336	rs34953090	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs34953090-?		2E-10	(Cingulate gyrus)			NR [8955960] (imputed)	N
1217	chr5	82863335	82863336	rs34953090	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs34953090-?		1E-16	(Average across all tracts)			NR [8955960] (imputed)	N
1217	chr5	82863335	82863336	rs34953090	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs34953090-?		1E-15	(Posterior corona radiata )			NR [8955960] (imputed)	N
1217	chr5	82863335	82863336	rs34953090	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs34953090-?		9E-12	(Body of corpus callosum)			NR [8955960] (imputed)	N
1217	chr5	82863335	82863336	rs34953090	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs34953090-?		8E-16	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
1217	chr5	82863335	82863336	rs34953090	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs34953090-?		7E-17	(Posterior corona radiata )			NR [8955960] (imputed)	N
1217	chr5	82863335	82863336	rs34953090	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs34953090-?		6E-9	(Uncinate fasciculus)			NR [8955960] (imputed)	N
1217	chr5	82863335	82863336	rs34953090	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs34953090-?		5E-13	(Retrolenticular part of internal capsule)			NR [8955960] (imputed)	N
1217	chr5	82863335	82863336	rs34953090	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs34953090-?		4E-15	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
1217	chr5	82863335	82863336	rs34953090	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs34953090-?		4E-14	(Superior corona radiata)			NR [8955960] (imputed)	N
1217	chr5	82863335	82863336	rs34953090	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs34953090-?		3E-15	(Anterior corona radiata)			NR [8955960] (imputed)	N
1217	chr5	82863335	82863336	rs34953090	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs34953090-?		3E-13	(Hippocampus )			NR [8955960] (imputed)	N
1217	chr5	82863335	82863336	rs34953090	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs34953090-?		3E-11	(Genu of corpus callosum)			NR [8955960] (imputed)	N
1217	chr5	82863335	82863336	rs34953090	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs34953090-?		2E-17	(Cingulate gyrus)			NR [8955960] (imputed)	N
1217	chr5	82863335	82863336	rs34953090	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs34953090-?		2E-17	(Average across all tracts)			NR [8955960] (imputed)	N
1217	chr5	82863335	82863336	rs34953090	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs34953090-?		1E-9	(External capsule )			NR [8955960] (imputed)	N
1217	chr5	82863335	82863336	rs34953090	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs34953090-?		1E-16	(Sagittal stratum)			NR [8955960] (imputed)	N
1217	chr5	82863335	82863336	rs34953090	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs34953090-?		1E-11	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
1217	chr5	82863335	82863336	rs34953090	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs34953090-?		1E-10	(Inferior fronto-occipital fasciculus)			NR [8955960] (imputed)	N
1217	chr5	82863335	82863336	rs34953090	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q14.3	NR	rs34953090-?		9E-12	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
1217	chr5	82863335	82863336	rs34953090	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q14.3	NR	rs34953090-?		5E-14	(Average across all tracts)			NR [8955960] (imputed)	N
1217	chr5	82863335	82863336	rs34953090	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs34953090-?		5E-14	(Average across all tracts)			NR [8955960] (imputed)	N
1217	chr5	82863335	82863336	rs34953090	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs34953090-?		4E-8	(External capsule )			NR [8955960] (imputed)	N
1217	chr5	82863335	82863336	rs34953090	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs34953090-?		4E-10	(Genu of corpus callosum)			NR [8955960] (imputed)	N
1217	chr5	82863335	82863336	rs34953090	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs34953090-?		3E-10	(Sagittal stratum)			NR [8955960] (imputed)	N
1217	chr5	82863335	82863336	rs34953090	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs34953090-?		1E-9	(Posterior corona radiata )			NR [8955960] (imputed)	N
1217	chr5	82863335	82863336	rs34953090	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs34953090-?		1E-12	(Anterior corona radiata)			NR [8955960] (imputed)	N
1217	chr5	82866075	82866076	rs17284524	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs17284524-?		5E-9	(Posterior limb of internal capsule)			NR [8955960] (imputed)	N
1217	chr5	82866075	82866076	rs17284524	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs17284524-?		1E-19	(Uncinate fasciculus)			NR [8955960] (imputed)	N
1217	chr5	82866075	82866076	rs17284524	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs17284524-?		1E-19	(Sagittal stratum)			NR [8955960] (imputed)	N
1217	chr5	82866075	82866076	rs17284524	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q14.3	NR	rs17284524-?		5E-13	(Retrolenticular part of internal capsule)			NR [8955960] (imputed)	N
1217	chr5	82866075	82866076	rs17284524	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q14.3	NR	rs17284524-?		1E-17	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
1217	chr5	82866075	82866076	rs17284524	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q14.3	NR	rs17284524-?		1E-13	(Sagittal stratum)			NR [8955960] (imputed)	N
1217	chr5	82868611	82868612	rs17205993	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q14.3	NR	rs17205993-?		3E-12	(Posterior corona radiata )			NR [8955960] (imputed)	N
1217	chr5	82868804	82868805	rs71638255	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs71638255-?		5E-12	(Hippocampus )			NR [8955960] (imputed)	N
1217	chr5	82869257	82869258	rs309584	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309584-?		8E-9	(Uncinate fasciculus)			NR [8955960] (imputed)	N
1217	chr5	82869257	82869258	rs309584	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309584-?		8E-9	(Sagittal stratum)			NR [8955960] (imputed)	N
1217	chr5	82869257	82869258	rs309584	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309584-?		3E-8	(Retrolenticular part of internal capsule)			NR [8955960] (imputed)	N
1217	chr5	82869257	82869258	rs309584	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309584-?		2E-8	(Anterior corona radiata)			NR [8955960] (imputed)	N
1217	chr5	82870210	82870211	rs13164259	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs13164259-?		9E-13	(Hippocampus )			NR [8955960] (imputed)	N
1217	chr5	82870210	82870211	rs13164259	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs13164259-?		7E-11	(External capsule )			NR [8955960] (imputed)	N
1217	chr5	82870210	82870211	rs13164259	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs13164259-?		2E-14	(Inferior fronto-occipital fasciculus)			NR [8955960] (imputed)	N
1217	chr5	82870210	82870211	rs13164259	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs13164259-?		1E-15	(Hippocampus )			NR [8955960] (imputed)	N
1217	chr5	82870210	82870211	rs13164259	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q14.3	NR	rs13164259-?		7E-11	(Anterior corona radiata)			NR [8955960] (imputed)	N
1217	chr5	82870210	82870211	rs13164259	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q14.3	NR	rs13164259-?		6E-13	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
1217	chr5	82870210	82870211	rs13164259	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q14.3	NR	rs13164259-?		2E-10	(Retrolenticular part of internal capsule)			NR [8955960] (imputed)	N
1217	chr5	82880397	82880398	rs71638257	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs71638257-?		2E-10	(Fornix (cres) / Stria terminalis)			NR [8955960] (imputed)	N
1217	chr5	82880397	82880398	rs71638257	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs71638257-?		1E-10	(Body of corpus callosum)			NR [8955960] (imputed)	N
1217	chr5	82884561	82884562	rs72771256	31527586	An J	2019-09-16	Nat Commun	Gastroesophageal reflux GWAS identifies risk loci that also associate with subsequent severe esophageal diseases.	Gastroesophageal reflux disease	80,265 European and unknown ancestry cases, 305,011 European and unknown ancestry controls	NA	5q14.3	HAPLN1, VCAN	rs72771256-G	NR	2E-8		1.0427902	[1.0279-1.0576]	Affymetrix, Illumina [up to 7600000] (imputed)	N
1217	chr5	82887420	82887421	rs35896134	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs35896134-?		5E-8	(Anterior limb of internal capsule)			NR [8955960] (imputed)	N
1217	chr5	82887420	82887421	rs35896134	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs35896134-?		2E-9	(Posterior limb of internal capsule)			NR [8955960] (imputed)	N
1217	chr5	82887420	82887421	rs35896134	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs35896134-?		4E-10	(Posterior limb of internal capsule)			NR [8955960] (imputed)	N
1217	chr5	82887420	82887421	rs35896134	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs35896134-?		3E-11	(Fornix (cres) / Stria terminalis)			NR [8955960] (imputed)	N
1217	chr5	82887420	82887421	rs35896134	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs35896134-?		2E-8	(Anterior limb of internal capsule)			NR [8955960] (imputed)	N
1217	chr5	82887420	82887421	rs35896134	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs35896134-?		5E-8	(Inferior fronto-occipital fasciculus)			NR [8955960] (imputed)	N
1217	chr5	82889909	82889910	rs310501	20516156	Lewis CM	2010-06-01	Am J Psychiatry	Genome-wide association study of major recurrent depression in the U.K. population.	Major depressive disorder	1,636 European ancestry cases, 1,594 European ancestry controls	1,418 European ancestry cases, 1,918 European ancestry controls	5q14.3	VCAN	rs310501-?	0.33	7E-6		1.16	[NR]	Illumina [471747]	N
1217	chr5	82891304	82891305	rs76738717	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs76738717-?		4E-8	(Anterior limb of internal capsule)			NR [8955960] (imputed)	N
1217	chr5	82896634	82896634	rs541815165	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs541815165-?		5E-11	(External capsule )			NR [8955960] (imputed)	N
1217	chr5	82896634	82896634	rs541815165	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs541815165-?		1E-10	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
1217	chr5	82896643	82896644	rs309563	31801372	Strawbridge RJ	2019-12-05	Arterioscler Thromb Vasc Biol	Carotid Intima-Media Thickness: Novel Loci, Sex-Specific Effects, and Genetic Correlations With Obesity and Glucometabolic Traits in UKB.	Carotid intima media thickness (mean)	10,708 British ancestry men, 11,471 British ancestry women	NA	5q14.3	VCAN, HAPLN1	rs309563-A	0.66	9E-10	(women)	0.01	[0.0061-0.0139] unit decrease	NR [NR] (imputed)	N
1217	chr5	82896855	82896856	rs62362865	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs62362865-?		1E-13	(Superior corona radiata)			NR [8955960] (imputed)	N
1217	chr5	82896855	82896856	rs62362865	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs62362865-?		8E-15	(Body of corpus callosum)			NR [8955960] (imputed)	N
1217	chr5	82898338	82898339	rs309571	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309571-?		5E-11	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
1217	chr5	82898338	82898339	rs309571	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309571-?		1E-8	(Average across all tracts)			NR [8955960] (imputed)	N
1217	chr5	82898338	82898339	rs309571	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309571-?		2E-8	(Sagittal stratum)			NR [8955960] (imputed)	N
1217	chr5	82898338	82898339	rs309571	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309571-?		2E-8	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
1217	chr5	82898338	82898339	rs309571	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309571-?		1E-8	(Average across all tracts)			NR [8955960] (imputed)	N
1217	chr5	82898338	82898339	rs309571	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q14.3	NR	rs309571-?		2E-10	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
1217	chr5	82899518	82899519	rs6866212	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs6866212-?		4E-8	(Anterior corona radiata)			NR [8955960] (imputed)	N
1217	chr5	82916625	82916626	rs35087492	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs35087492-?		5E-11	(Body of corpus callosum)			NR [8955960] (imputed)	N
1217	chr5	82916625	82916626	rs35087492	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs35087492-?		3E-19	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
1217	chr5	82916625	82916626	rs35087492	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs35087492-?		2E-19	(Posterior corona radiata )			NR [8955960] (imputed)	N
1217	chr5	82916625	82916626	rs35087492	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs35087492-?		1E-18	(Retrolenticular part of internal capsule)			NR [8955960] (imputed)	N
1217	chr5	82916625	82916626	rs35087492	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs35087492-?		4E-21	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
1217	chr5	82916625	82916626	rs35087492	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q14.3	NR	rs35087492-?		2E-14	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
1217	chr5	82916625	82916626	rs35087492	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs35087492-?		3E-20	(Anterior corona radiata)			NR [8955960] (imputed)	N
1217	chr5	82922159	82922160	rs35333770	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs35333770-?		8E-9	(Superior fronto-occipital fasciculus)			NR [8955960] (imputed)	N
1217	chr5	82922895	82922896	rs66474919	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs66474919-?		8E-18	(Anterior corona radiata)			NR [8955960] (imputed)	N
1217	chr5	82922895	82922896	rs66474919	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs66474919-?		8E-21	(Cingulate gyrus)			NR [8955960] (imputed)	N
1217	chr5	82922895	82922896	rs66474919	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs66474919-?		3E-22	(Anterior corona radiata)			NR [8955960] (imputed)	N
1217	chr5	82922895	82922896	rs66474919	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs66474919-?		1E-20	(Superior corona radiata)			NR [8955960] (imputed)	N
1217	chr5	82922895	82922896	rs66474919	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs66474919-?		6E-16	(Posterior corona radiata )			NR [8955960] (imputed)	N
1217	chr5	82929478	82929479	rs35430475	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs35430475-?		5E-12	(Genu of corpus callosum)			NR [8955960] (imputed)	N
1217	chr5	82929478	82929479	rs35430475	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs35430475-?		3E-10	(Body of corpus callosum)			NR [8955960] (imputed)	N
1217	chr5	82929478	82929479	rs35430475	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs35430475-?		8E-10	(Uncinate fasciculus)			NR [8955960] (imputed)	N
1217	chr5	82929478	82929479	rs35430475	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs35430475-?		3E-18	(Superior corona radiata)			NR [8955960] (imputed)	N
1217	chr5	82929478	82929479	rs35430475	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs35430475-?		2E-15	(Genu of corpus callosum)			NR [8955960] (imputed)	N
1217	chr5	82929478	82929479	rs35430475	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs35430475-?		1E-20	(Anterior corona radiata)			NR [8955960] (imputed)	N
1217	chr5	82929478	82929479	rs35430475	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs35430475-?		1E-13	(Body of corpus callosum)			NR [8955960] (imputed)	N
1217	chr5	82929478	82929479	rs35430475	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs35430475-?		9E-9	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
1217	chr5	82929478	82929479	rs35430475	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs35430475-?		3E-13	(Genu of corpus callosum)			NR [8955960] (imputed)	N
1217	chr5	82929478	82929479	rs35430475	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs35430475-?		2E-8	(Retrolenticular part of internal capsule)			NR [8955960] (imputed)	N
1217	chr5	82929478	82929479	rs35430475	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs35430475-?		2E-11	(Superior corona radiata)			NR [8955960] (imputed)	N
1217	chr5	82929478	82929479	rs35430475	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs35430475-?		1E-18	(Average across all tracts)			NR [8955960] (imputed)	N
1217	chr5	82929478	82929479	rs35430475	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs35430475-?		1E-15	(Anterior corona radiata)			NR [8955960] (imputed)	N
1217	chr5	82929478	82929479	rs35430475	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs35430475-?		1E-12	(Posterior corona radiata )			NR [8955960] (imputed)	N
1217	chr5	82929478	82929479	rs35430475	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs35430475-?		1E-11	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
1217	chr5	82929575	82929576	rs17284573	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs17284573-?		4E-16	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
1217	chr5	82929575	82929576	rs17284573	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs17284573-?		1E-19	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
1217	chr5	82929575	82929576	rs17284573	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs17284573-?		1E-19	(Cingulate gyrus)			NR [8955960] (imputed)	N
1217	chr5	82929575	82929576	rs17284573	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q14.3	NR	rs17284573-?		6E-12	(Posterior corona radiata )			NR [8955960] (imputed)	N
1217	chr5	82929575	82929576	rs17284573	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q14.3	NR	rs17284573-?		1E-10	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
1217	chr5	82929575	82929576	rs17284573	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs17284573-?		3E-14	(Sagittal stratum)			NR [8955960] (imputed)	N
1217	chr5	82929575	82929576	rs17284573	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs17284573-?		1E-11	(External capsule )			NR [8955960] (imputed)	N
1217	chr5	82931383	82931384	rs17206055	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs17206055-?		2E-8	(Fornix (cres) / Stria terminalis)			NR [8955960] (imputed)	N
1217	chr5	82931383	82931384	rs17206055	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs17206055-?		2E-12	(Uncinate fasciculus)			NR [8955960] (imputed)	N
1217	chr5	82931383	82931384	rs17206055	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs17206055-?		1E-23	(Posterior corona radiata )			NR [8955960] (imputed)	N
1217	chr5	82931383	82931384	rs17206055	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs17206055-?		1E-19	(Retrolenticular part of internal capsule)			NR [8955960] (imputed)	N
1217	chr5	82931383	82931384	rs17206055	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs17206055-?		4E-13	(Genu of corpus callosum)			NR [8955960] (imputed)	N
1217	chr5	82931383	82931384	rs17206055	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs17206055-?		3E-8	(Retrolenticular part of internal capsule)			NR [8955960] (imputed)	N
1217	chr5	82931383	82931384	rs17206055	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs17206055-?		2E-13	(Superior corona radiata)			NR [8955960] (imputed)	N
1217	chr5	82931383	82931384	rs17206055	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs17206055-?		1E-8	(Uncinate fasciculus)			NR [8955960] (imputed)	N
1217	chr5	82935095	82935096	rs7731588	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs7731588-?		2E-12	(Genu of corpus callosum)			NR [8955960] (imputed)	N
1217	chr5	82935095	82935096	rs7731588	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs7731588-?		5E-16	(Genu of corpus callosum)			NR [8955960] (imputed)	N
1217	chr5	82935600	82935601	rs17206075	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs17206075-?		8E-15	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
1217	chr5	82935600	82935601	rs17206075	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs17206075-?		7E-9	(Inferior fronto-occipital fasciculus)			NR [8955960] (imputed)	N
1217	chr5	82935600	82935601	rs17206075	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs17206075-?		6E-18	(Retrolenticular part of internal capsule)			NR [8955960] (imputed)	N
1217	chr5	82935600	82935601	rs17206075	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs17206075-?		6E-10	(Fornix (cres) / Stria terminalis)			NR [8955960] (imputed)	N
1217	chr5	82935600	82935601	rs17206075	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs17206075-?		5E-19	(Uncinate fasciculus)			NR [8955960] (imputed)	N
1217	chr5	82935600	82935601	rs17206075	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs17206075-?		5E-19	(Sagittal stratum)			NR [8955960] (imputed)	N
1217	chr5	82935600	82935601	rs17206075	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs17206075-?		5E-18	(Posterior corona radiata )			NR [8955960] (imputed)	N
1217	chr5	82935600	82935601	rs17206075	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs17206075-?		3E-18	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
1217	chr5	82935600	82935601	rs17206075	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs17206075-?		3E-13	(Cingulate gyrus)			NR [8955960] (imputed)	N
1217	chr5	82935600	82935601	rs17206075	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs17206075-?		2E-18	(Anterior corona radiata)			NR [8955960] (imputed)	N
1217	chr5	82935600	82935601	rs17206075	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs17206075-?		2E-15	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
1217	chr5	82935600	82935601	rs17206075	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs17206075-?		1E-21	(Average across all tracts)			NR [8955960] (imputed)	N
1217	chr5	82935600	82935601	rs17206075	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs17206075-?		1E-12	(Superior corona radiata)			NR [8955960] (imputed)	N
1217	chr5	82935600	82935601	rs17206075	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs17206075-?		4E-20	(Posterior corona radiata )			NR [8955960] (imputed)	N
1217	chr5	82935600	82935601	rs17206075	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs17206075-?		2E-19	(Retrolenticular part of internal capsule)			NR [8955960] (imputed)	N
1217	chr5	82935600	82935601	rs17206075	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs17206075-?		2E-13	(External capsule )			NR [8955960] (imputed)	N
1217	chr5	82935600	82935601	rs17206075	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs17206075-?		1E-22	(Average across all tracts)			NR [8955960] (imputed)	N
1217	chr5	82935600	82935601	rs17206075	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs17206075-?		1E-21	(Sagittal stratum)			NR [8955960] (imputed)	N
1217	chr5	82935600	82935601	rs17206075	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs17206075-?		1E-14	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
1217	chr5	82935600	82935601	rs17206075	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q14.3	NR	rs17206075-?		4E-11	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
1217	chr5	82935600	82935601	rs17206075	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q14.3	NR	rs17206075-?		4E-11	(Sagittal stratum)			NR [8955960] (imputed)	N
1217	chr5	82935600	82935601	rs17206075	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q14.3	NR	rs17206075-?		1E-17	(Average across all tracts)			NR [8955960] (imputed)	N
1217	chr5	82939809	82939810	rs17284587	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs17284587-?		7E-15	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
1217	chr5	82939809	82939810	rs17284587	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs17284587-?		4E-21	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
1217	chr5	82939809	82939810	rs17284587	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs17284587-?		2E-8	(External capsule )			NR [8955960] (imputed)	N
1217	chr5	82939809	82939810	rs17284587	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs17284587-?		1E-22	(Average across all tracts)			NR [8955960] (imputed)	N
1217	chr5	82939809	82939810	rs17284587	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs17284587-?		1E-14	(Cingulate gyrus)			NR [8955960] (imputed)	N
1217	chr5	82939809	82939810	rs17284587	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs17284587-?		9E-24	(Average across all tracts)			NR [8955960] (imputed)	N
1217	chr5	82939809	82939810	rs17284587	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs17284587-?		7E-17	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
1217	chr5	82939809	82939810	rs17284587	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs17284587-?		5E-12	(Hippocampus )			NR [8955960] (imputed)	N
1217	chr5	82939809	82939810	rs17284587	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs17284587-?		4E-11	(External capsule )			NR [8955960] (imputed)	N
1217	chr5	82939809	82939810	rs17284587	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs17284587-?		3E-9	(Posterior limb of internal capsule)			NR [8955960] (imputed)	N
1217	chr5	82939809	82939810	rs17284587	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs17284587-?		2E-9	(Inferior fronto-occipital fasciculus)			NR [8955960] (imputed)	N
1217	chr5	82939809	82939810	rs17284587	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs17284587-?		2E-21	(Sagittal stratum)			NR [8955960] (imputed)	N
1217	chr5	82939809	82939810	rs17284587	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs17284587-?		2E-17	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
1217	chr5	82939809	82939810	rs17284587	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q14.3	NR	rs17284587-?		4E-9	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
1217	chr5	82939809	82939810	rs17284587	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q14.3	NR	rs17284587-?		4E-18	(Average across all tracts)			NR [8955960] (imputed)	N
1217	chr5	82939809	82939810	rs17284587	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs17284587-?		9E-20	(Average across all tracts)			NR [8955960] (imputed)	N
1217	chr5	82939809	82939810	rs17284587	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs17284587-?		3E-9	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
1217	chr5	82939809	82939810	rs17284587	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs17284587-?		3E-13	(Sagittal stratum)			NR [8955960] (imputed)	N
1217	chr5	82947826	82947827	rs336970	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs336970-?		1E-8	(Posterior corona radiata )			NR [8955960] (imputed)	N
1217	chr5	82960733	82960734	rs3846635	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral fat	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	5q14.3	HAPLN1	rs3846635-G	0.08	2E-6	(women)			Affymetrix, Illumina [2500000] (imputed)	N
1218	chr5	82971452	82971453	rs188149279	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	5q14.3	HAPLN1	rs188149279-C	0.0046	6E-6		1.2317	[0.7-1.77] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1218	chr5	82971452	82971453	rs188149279	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	5q14.3	HAPLN1	rs188149279-C	0.0046	6E-6		1.2317	[0.7-1.77] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1218	chr5	82974670	82974671	rs17284622	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs17284622-?		8E-9	(Anterior corona radiata)			NR [8955960] (imputed)	N
1218	chr5	82974670	82974671	rs17284622	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs17284622-?		4E-9	(Retrolenticular part of internal capsule)			NR [8955960] (imputed)	N
1218	chr5	82974670	82974671	rs17284622	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs17284622-?		2E-8	(Uncinate fasciculus)			NR [8955960] (imputed)	N
1218	chr5	82974670	82974671	rs17284622	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs17284622-?		2E-8	(Sagittal stratum)			NR [8955960] (imputed)	N
1218	chr5	82974670	82974671	rs17284622	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs17284622-?		2E-10	(Average across all tracts)			NR [8955960] (imputed)	N
1218	chr5	82974670	82974671	rs17284622	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs17284622-?		1E-8	(Posterior corona radiata )			NR [8955960] (imputed)	N
1218	chr5	82974670	82974671	rs17284622	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs17284622-?		5E-8	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
1218	chr5	82974670	82974671	rs17284622	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs17284622-?		4E-8	(Hippocampus )			NR [8955960] (imputed)	N
1218	chr5	82974670	82974671	rs17284622	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs17284622-?		3E-9	(Retrolenticular part of internal capsule)			NR [8955960] (imputed)	N
1218	chr5	82974670	82974671	rs17284622	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs17284622-?		2E-9	(Posterior corona radiata )			NR [8955960] (imputed)	N
1218	chr5	82974670	82974671	rs17284622	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs17284622-?		2E-9	(Anterior corona radiata)			NR [8955960] (imputed)	N
1218	chr5	82974670	82974671	rs17284622	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs17284622-?		2E-8	(Sagittal stratum)			NR [8955960] (imputed)	N
1218	chr5	82974670	82974671	rs17284622	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs17284622-?		1E-8	(Cingulate gyrus)			NR [8955960] (imputed)	N
1218	chr5	82974670	82974671	rs17284622	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs17284622-?		1E-10	(Average across all tracts)			NR [8955960] (imputed)	N
1218	chr5	82974670	82974671	rs17284622	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q14.3	NR	rs17284622-?		6E-9	(Average across all tracts)			NR [8955960] (imputed)	N
1218	chr5	82985738	82985739	rs4466137	17903305	Murabito JM	2007-09-19	BMC Med Genet	A genome-wide association study of breast and prostate cancer in the NHLBI's Framingham Heart Study.	Prostate cancer	59 cases, 558 controls	NA	5q14.3	HAPLN1	rs4466137-?	NR	3E-6				Affymetrix [70897]	N
1218	chr5	82991069	82991070	rs34456333	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q14.3	NR	rs34456333-?		1E-8	(Superior corona radiata)			NR [8955960] (imputed)	N
1218	chr5	83004387	83004388	rs183050336	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Platelet-derived growth factor BB levels	8,293 Finnish ancestry individuals	NA	5q14.3	NR	rs183050336-G		3E-6		0.7384	[0.43-1.05] SD units increase	NR [10700000] (imputed)	N
1218	chr5	83023204	83023205	rs72772967	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	5q14.3	HAPLN1	rs72772967-A	0.67734375	1E-6	(HAPLN1, 3196_6_2)	0.1299652	[0.077-0.183] unit decrease	Illumina [> 1000000] (imputed)	N
1218	chr5	83024709	83024710	rs1563553	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	5q14.3		rs1563553-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1219	chr5	83173592	83173593	rs4552569	22138694	Lin Z	2011-12-04	Nat Genet	A genome-wide association study in Han Chinese identifies new susceptibility loci for ankylosing spondylitis.	Ankylosing spondylitis	1,837 Han Chinese ancestry cases, 4,231 Han Chinese ancestry controls	2,100 Han Chinese ancestry cases, 3,496 Han Chinese ancestry controls	5q14.3	HAPLN1, EDIL3	rs4552569-C	0.28	9E-10		1.21	[1.14-1.29]	Illumina [1356350] (imputed)	N
1219	chr5	83176795	83176796	rs10066028	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5q14.3	HAPLN1	rs10066028-?	NR	9E-6	(TAG 56:5)	0.17943723	[0.1-0.26] unit increase	Affymetrix [at least 2500000] (imputed)	N
1219	chr5	83176795	83176796	rs10066028	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5q14.3	HAPLN1	rs10066028-?	NR	5E-6	(TAG 56:7)	0.18486957	[0.11-0.26] unit increase	Affymetrix [at least 2500000] (imputed)	N
1219	chr5	83191478	83191479	rs13177784	28031287	Sasayama D	2016-11-26	Hum Mol Genet	Genome-wide quantitative trait loci mapping of the human cerebrospinal fluid proteome.	Cerebrospinal fluid biomarker levels	133 Japanese ancestry individuals.	NA	5q14.3	NR	rs13177784-?	NR	2E-16	(Hyaluronan and proteoglycan link protein 1)			Illumina [514227]	N
1219	chr5	83222315	83222316	rs7703659	34607834	Dawed AY	2021-10-04	Diabetes Care	Genome-Wide Meta-analysis Identifies Genetic Variants Associated With Glycemic Response to Sulfonylureas.	Reduction in HbA1c levels in response to sulfonylureas treatment in type 2 diabetes	5,485 European ancestry individuals	NA	5q14.3		rs7703659-A	0.132	1E-6		0.14596	[0.087-0.205] unit decrease	Affymetrix, Illumina [538635] (imputed)	N
1220	chr5	83233018	83233019	rs10942340	32358372	Ouyang H	2020-05-01	Medicine (Baltimore)	Constructing gene network for type 1 narcolepsy based on genome-wide association study and differential gene expression analysis (STROBE).	Narcolepsy with cataplexy	903 Chinese ancestry cases, 1,982 Chinese ancestry controls	NA	5q14.3	NR	rs10942340-?	NR	9E-6		1.322	[1.1690-1.4960]	Affymetrix [237955] (imputed)	N
1220	chr5	83260937	83260938	rs2301070	25240745	Lopez S	2014-09-18	Mitochondrion	A genome-wide association study in the genetic analysis of idiopathic thrombophilia project suggests sex-specific regulation of mitochondrial DNA levels.	Mitochondrial DNA levels	173 European ancestry males and 213 European ancestry females from 21 families	NA	5q14.3	EDIL3	rs2301070-?	NR	9E-6			[NR]	Illumina [283437]	N
1220	chr5	83315622	83315623	rs187568	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	5q14.3	intergenic	rs187568-A	NR	3E-6	(Chinese)	1.1025358	[1.06-1.14]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1221	chr5	83362311	83362312	rs138920492	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q14.3	NR	rs138920492-G	0.01045	3E-8	(F2)	0.03566	NR unit increase	Illumina [1671387] (imputed)	N
1221	chr5	83368044	83368045	rs145317423	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	5q14.3	EDIL3	rs145317423-C	0.984	2E-6	(AA)	0.066	unit increase	Illumina [NR] (imputed)	N
1221	chr5	83428072	83428073	rs144816630	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Rubella	12,000 European ancestry cases, 71,597 European ancestry controls	NA	5q14.3	NR	rs144816630-?	NR	4E-6		0.1169	[0.068-0.166] unit decrease	Illumina [at least 560000] (imputed)	N
1221	chr5	83470985	83470986	rs342422	31116379	Meier SM	2019-05-22	JAMA Psychiatry	Genetic Variants Associated With Anxiety and Stress-Related Disorders: A Genome-Wide Association Study and Mouse-Model Study.	Anxiety and stress-related disorders	12,655 European ancestry cases, 19,225 European ancestry controls	NA	5q14.3	EDIL3	rs342422-G	NR	1E-6		1.0869565	[1.05-1.14]	Illumina [8933939] (imputed)	N
1222	chr5	83495854	83495855	rs77766537	27629369	Gao J	2016-09-15	Neuropsychopharmacology	Genome-Wide Association Study of Loneliness Demonstrates a Role for Common Variation.	Loneliness	2,075 European ancestry cases, 3,875 European ancestry controls, 427 African American cases, 398 African American controls, 294 Hispanic cases, 327 Hispanic controls, 57 cases, 73 controls	NA	5q14.3	EDIL3	rs77766537-?	NR	6E-6	(EA)	0.141	[0.08-0.202] unit increase	Illumina [7176022] (imputed)	N
1222	chr5	83499642	83499643	rs347344	20237162	Bozaoglu K	2010-03-17	J Clin Endocrinol Metab	Chemerin, a novel adipokine in the regulation of angiogenesis.	Chemerin levels	858 Mexican American family members and individuals	NA	5q14.3	EDIL3	rs347344-?	NR	1E-6				Illumina [542944]	N
1222	chr5	83607141	83607142	rs2937080	30787463	Escala-Garcia M	2019-02-21	Br J Cancer	Genome-wide association study of germline variants and breast cancer-specific mortality.	Breast cancer specific mortality in estrogen receptor negative breast cancer	2,125 European ancestry cases, 14,047 European ancestry controls	NA	5q14.3	NR	rs2937080-?	NR	2E-6		0.4252747	[0.30-0.60]	Affymetrix, Illumina [~ 10400000] (imputed)	N
1225	chr5	83905761	83905762	rs184839441	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 277)	19,670 European ancestry individuals	NA	5q14.3		rs184839441-?	NR	3E-8				NR [9705931] (imputed)	N
1225	chr5	83907228	83907229	rs72766477	24388013	Ferreira MA	2013-12-30	J Allergy Clin Immunol	Genome-wide association analysis identifies 11 risk variants associated with the asthma with hay fever phenotype.	Asthma and hay fever	6,685 European ancestry cases, 14,091 European ancestry controls	878 European ancestry cases, 2,455 European ancestry controls	5q14.3	EDIL3	rs72766477-A		5E-7		1.3402	[1.23-1.45]	Illumina [up to 4972397] (imputed)	N
1226	chr5	84017522	84017524	rs1491010731	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q14.3	NR	rs1491010731-GGAA	0.01394	2E-8	(COL18A1)	0.06335	NR unit decrease	Illumina [1671387] (imputed)	N
1226	chr5	84074291	84074292	rs144704329	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	5q14.3	NR	rs144704329-?	NR	2E-7	(Latino)	1.5768	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1226	chr5	84084775	84084776	rs113524839	23419831	Ramanan VK	2013-02-19	Mol Psychiatry	APOE and BCHE as modulators of cerebral amyloid deposition: a florbetapir PET genome-wide association study.	Alzheimer's disease biomarkers	555 European ancestry individuals	NA	5q14.3	EDIL3	rs113524839-T	0.11	8E-7	(Cortical Ab)			Illumina [6108668] (imputed)	N
1226	chr5	84090599	84090600	rs4555802	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric bone mineral content (femoral neck)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	5q14.3	NR	rs4555802-C	0.429	2E-6	(Males)	0.239175	[0.14-0.34] unit increase	Illumina [~ 6600000] (imputed)	N
1227	chr5	84245073	84245074	rs6872875	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	5q14.3	NR	rs6872875-?	NR	1E-6				Affymetrix [NR]	N
1227	chr5	84247254	84247255	rs12697745	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5q14.3	HAPLN1	rs12697745-?	NR	8E-6	(SM 24:1)	0.18963102	[0.11-0.27] unit increase	Affymetrix [at least 2500000] (imputed)	N
1228	chr5	84390422	84390423	rs4129628	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	5q14.3	NR	rs4129628-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1228	chr5	84390422	84390423	rs4129628	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	5q14.3		rs4129628-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1229	chr5	84520673	84520674	rs67177172	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Photic sneeze reflex	32,446 European ancestry cases, 67,249 European ancestry controls	NA	5q14.3	EDIL3	rs67177172-?	NR	1E-10		1.07	[1.048-1.092]	Illumina [13729857] (imputed)	N
1230	chr5	84583768	84583769	rs12153606	23720494	Evans DM	2013-05-29	Hum Mol Genet	Genome-wide association study identifies loci affecting blood copper, selenium and zinc.	Blood trace element (Cu levels)	2,603 European ancestry individuals	NA	5q14.3	COX7C, EDIL3	rs12153606-?	NR	2E-6		0.159	[0.092-0.226] unit increase	Illumina [> 2500000] (imputed)	N
1230	chr5	84592067	84592068	rs972809	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	5q14.3	NR	rs972809-?	NR	4E-6				Affymetrix [NR]	N
1230	chr5	84606527	84606528	rs4920799	17903301	Vasan RS	2007-09-19	BMC Med Genet	Genome-wide association of echocardiographic dimensions, brachial artery endothelial function and treadmill exercise responses in the Framingham Heart Study.	Echocardiographic traits	Up to 1,238 European ancestry individuals	NA	5q14.3	intergenic	rs4920799-?	NR	7E-6	(LVDD)			Affymetrix [70897]	N
1231	chr5	84680231	84680232	rs72772212	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-13 levels	3,557 Finnish ancestry individuals	NA	5q14.3	NR	rs72772212-C		8E-6		0.4153	[0.23-0.6] SD units decrease	NR [10700000] (imputed)	N
1231	chr5	84701662	84701663	rs177710	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Eubacterium belonging to family Erysipelotrichaceae)	1,068 Japanese ancestry individuals	NA	5q14.3	intergenic	rs177710-A	0.03	7E-6		1.13	[0.64-1.62] unit increase	Illumina [6380737] (imputed)	N
1233	chr5	85047200	85047201	rs13161683	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Chronic sinus infection	5,291 European ancestry cases, 79,622 European ancestry controls	NA	5q14.3	NR	rs13161683-?	NR	9E-6		0.0948	[0.053-0.137] unit increase	Illumina [at least 560000] (imputed)	N
1233	chr5	85058123	85058124	rs13183849	30196971	Bray MJ	2018-09-01	Fertil Steril	Transethnic and race-stratified genome-wide association study of fibroid characteristics in African American and European American women.	Uterine fibroid size (maximum dimension)	1,301 African American or European ancestry female individuals	NA	5q14.3	EDIL3, COX7C	rs13183849-C	0.29	8E-7	(AA)	0.09	[0.05-0.12] unit decrease	Affymetrix [up to 9596033] (imputed)	N
1234	chr5	85135386	85135387	rs144891322	32205469	Akcimen F	2020-03-23	Aging (Albany NY)	Genome-wide association study identifies genetic factors that modify age at onset in Machado-Joseph disease.	Machado-Joseph disease (age at onset)	700 cases	NA	5q14.3	CTD-2036A18.2	rs144891322-C	0.0214	5E-6		6.09914	[3.48-8.72] unit increase	Illumina [6716580] (imputed)	N
1235	chr5	85217868	85217869	rs1583686	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	5q14.3	NBPF22P	rs1583686-A	0.124	1E-6	(ALT )	0.04	[NR] U/L increase	Illumina [899892]	N
1236	chr5	85389379	85389380	rs2161208	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Daytime sleep phenotypes	874 European ancestry individuals	NA	5q14.3	PTP4A1P4, NBPF22P	rs2161208-T	NR	1E-7	(daytime napping)	0.7025	[0.44-0.96] unit increase	Affymetrix [7141204] (imputed)	N
1237	chr5	85466139	85466140	rs1422110	26174813	Alemany S	2015-07-14	Am J Med Genet B Neuropsychiatr Genet	New suggestive genetic loci and biological pathways for attention function in adult attention-deficit/hyperactivity disorder.	Attention function in attention deficit hyperactive disorder	479 European ancestry adult cases	NA	5q14.3	NBPF22P	rs1422110-G	0.46	8E-6	(IIV)	0.19	[0.11-0.27] unit decrease	Illumina [799713]	N
1237	chr5	85510789	85510790	rs113550724	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	5q14.3	NA	rs113550724-C		3E-11		0.0122342	[0.0086-0.0158] unit decrease	Illumina [13288253] (imputed)	N
1237	chr5	85512239	85512240	rs2964898	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	5q14.3	NBPF22P, PTP4A1P4	rs2964898-T	NR	9E-6	(sleep efficiency)	5.334	[2.98-7.69] unit decrease	Affymetrix [7141204] (imputed)	N
1237	chr5	85557298	85557299	rs11742363	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 5 levels	252 European ancestry individuals	NA	5q14.3		rs11742363-C	NR	4E-7		0.14933	[0.093-0.206] unit decrease	Illumina [NR] (imputed)	N
1238	chr5	85610768	85610769	rs12234108	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	5q14.3	Intergenic	rs12234108-A	0.5138	3E-8	(MTAG)	0.0092	[0.0061-0.0123] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1238	chr5	85668445	85668446	rs11958792	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Initial pursuit acceleration	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	5q14.3	NBPF22P	rs11958792-A	0.1906	3E-6	(African)			Illumina [4404269] (imputed)	N
1241	chr5	86035979	86035980	rs6897040	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Coronary artery disease in dyslipidemia	768 Korean ancestry cases, 19,999 Korean ancestry controls	NA	5q14.3		rs6897040-T	0.4264	9E-6		1.262	[1.139-1.399]	Affymetrix [7975321] (imputed)	N
1241	chr5	86093949	86093950	rs1445920	32121467	Adewuyi EO	2020-02-29	Genes (Basel)	Shared Molecular Genetic Mechanisms Underlie Endometriosis and Migraine Comorbidity.	Endometriosis or migraine	17,054 European and Japanese ancestry endometriosis cases, 29,208 European ancestry migraine cases, 191,858 European and Japanese ancestry controls, 172,931 European ancestry controls	NA	5q14.3	NR	rs1445920-C	NR	6E-6	(random effect)	1.0526316	NR	NR [6904914] (imputed)	N
1242	chr5	86141427	86141428	rs72777857	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q14.3	NR	rs72777857-C	0.1324	1E-8	(CTSZ)	0.03077	NR unit increase	Illumina [1671387] (imputed)	N
1242	chr5	86164432	86164433	rs10942474	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	5q14.3	NR	rs10942474-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
1242	chr5	86164432	86164433	rs10942474	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	5q14.3		rs10942474-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1242	chr5	86174146	86174147	rs1493354	24025145	Chung S	2013-09-11	Breast Cancer Res	A genome-wide association study of chemotherapy-induced alopecia in breast cancer patients.	Adverse response to chemotherapy in breast cancer (alopecia) (anti-microtubule)	119 Japanese ancestry cases, 105 Japanese ancestry controls	NA	5q14.3	RPL10AP9	rs1493354-T	0.22	9E-6	(Dominant)	2.37	[1.56-3.6]	Illumina [555600]	N
1242	chr5	86177772	86177773	rs2471042	24025145	Chung S	2013-09-11	Breast Cancer Res	A genome-wide association study of chemotherapy-induced alopecia in breast cancer patients.	Adverse response to chemotherapy in breast cancer (alopecia) (anti-microtubule)	119 Japanese ancestry cases, 105 Japanese ancestry controls	NA	5q14.3	RPL10AP9	rs2471042-T	0.21	5E-6	(Dominant)	2.51	[1.64-3.81]	Illumina [555600]	N
1243	chr5	86299470	86299471	rs55695634	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	5q14.3	NR	rs55695634-C	0.784937	3E-8		0.0124319	[0.008-0.0168] unit decrease	NR [NR]	N
1243	chr5	86314936	86314937	rs13165004	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	5q14.3		rs13165004-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1243	chr5	86368338	86368339	rs6894323	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	5q14.3		rs6894323-G	NR	2E-8		0.0146	[0.0095-0.0197] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
1244	chr5	86382725	86382726	rs10942491	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	5q14.3		rs10942491-C	NR	2E-9		0.0118	[0.0079-0.0157] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1244	chr5	86391048	86391049	rs2544681	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x long total sleep time interaction (2df test)	2,933 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, up to 7,870 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,975 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 32,171 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 616 East Asian ancestry long sleepers, up to 9,486 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 929 African American controls, 2,517 East Asian ancestry controls, up to 38,126 European ancestry controls, 10,063 Hispanic controls	5q14.3	MIR4280	rs2544681-?	NR	3E-9		0.002898	[0.00044-0.00536] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
1244	chr5	86391048	86391049	rs2544681	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x long total sleep time interaction (1df test)	2,933 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, up to 7,870 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,975 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 32,171 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 616 East Asian ancestry long sleepers, up to 9,486 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 929 African American controls, 2,517 East Asian ancestry controls, up to 38,126 European ancestry controls, 10,063 Hispanic controls	5q14.3	MIR4280	rs2544681-?	NR	3E-6		0.01479	[0.0086-0.021] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
1244	chr5	86398010	86398011	rs78404578	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	5q14.3	NR	rs78404578-A	0.176534	8E-11		0.016609	[0.012-0.022] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
1244	chr5	86399355	86399356	rs2544676	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	5q14.3	NR	rs2544676-?	NR	1E-10				Affymetrix [~ 8270000] (imputed)	N
1244	chr5	86400703	86400704	rs2544673	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5q14.3		rs2544673-?	NR	2E-15				NR [~ 8900000] (imputed)	N
1244	chr5	86427825	86427826	rs17446201	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	5q14.3	NR	rs17446201-?	NR	9E-6		0.0077758	[0.0043-0.0112] unit decrease	Affymetrix [805426] (imputed)	N
1244	chr5	86432616	86432617	rs2032794	21173776	de Moor MH	2010-12-21	Mol Psychiatry	Meta-analysis of genome-wide association studies for personality.	Openness	17,375 European ancestry individuals	3,294 European ancestry individuals	5q14.3	RASA1	rs2032794-C	NR	2E-6		0.48	[0.30-0.66] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1244	chr5	86459306	86459307	rs30422	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5q14.3	LOC644285	rs30422-?	NR	3E-6	(PC 38:2)	0.19650944	[0.11-0.28] unit increase	Affymetrix [at least 2500000] (imputed)	N
1244	chr5	86464599	86464600	rs30419	29503163	Yu H	2018-03-01	Lancet Psychiatry	Five novel loci associated with antipsychotic treatment response in patients with schizophrenia: a genome-wide association study.	Response to quetiapine in schizophrenia	386 Han Chinese ancestry cases	NA	5q14.3	MIR4280	rs30419-T	NR	6E-6		14.8543	[8.53-21.18] unit increase	Illumina [6097251] (imputed)	N
1244	chr5	86466031	86466032	rs200529678	30898391	Lawrenson K	2019-03-19	Gynecol Oncol	Genome-wide association studies identify susceptibility loci for epithelial ovarian cancer in east Asian women.	Epithelial ovarian cancer	3,238 East Asian ancestry cases, 4,083 East Asian ancestry controls	NA	5q14.3		rs200529678-?	NR	5E-6	(lmp)	2.59		Illumina [11595112] (imputed)	N
1245	chr5	86577351	86577352	rs7719891	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	5q14.3	NR	rs7719891-G	0.2605	9E-9		0.0401	[0.026-0.054] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1245	chr5	86577351	86577352	rs7719891	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	5q14.3	RASA1	rs7719891-G	0.2585	2E-8		1.04	[1.03-1.06]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1245	chr5	86584819	86584820	rs388340	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	5q14.3	RASA1	rs388340-A	0.5593	5E-10		0.0106183	[0.0073-0.014] unit decrease	Affymetrix [11880941] (imputed)	N
1245	chr5	86592955	86592955	rs1487091351	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q14.3	NR	rs1487091351-T	0.01568	1E-10	(CIITA)	0.4584	NR unit increase	Illumina [1671387] (imputed)	N
1245	chr5	86610988	86610989	rs35148638	25939597	Berndt SI	2015-05-05	Nat Commun	Two susceptibility loci identified for prostate cancer aggressiveness.	Prostate cancer aggressiveness	4,545 European ancestry cases	7,973 European ancestry cases	5q14.3	RASA1, CCNH	rs35148638-C	0.255	6E-9		0.088	[0.059-0.117] unit increase	Illumina [1531807] (imputed)	N
1245	chr5	86627137	86627138	rs13157168	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	5q14.3	RASA1	rs13157168-?	NR	4E-10		1.1898	[0.83-1.55] unit increase	Affymetrix [11100000] (imputed)	N
1245	chr5	86630283	86630284	rs66507804	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	5q14.3		rs66507804-T	0.7946	1E-10		0.017	[0.011-0.023] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
1245	chr5	86630283	86630284	rs66507804	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	5q14.3	RASA1	rs66507804-C	0.20099999999999996	4E-11		1.032724		Affymetrix [11880941] (imputed)	N
1246	chr5	86695273	86695274	rs2230641	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5q14.3	CCNH	rs2230641-G	0.205	1E-14	(Cyclin-H, CCNH.9848.22.3)	0.24	[0.18-0.3] unit decrease	Affymetrix [10572788] (imputed)	N
1246	chr5	86727565	86727566	rs11951885	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	5q14.3		rs11951885-?	NR	3E-11				NR [~ 8900000] (imputed)	N
1246	chr5	86727689	86727690	rs79236537	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		5q14.3	CCNH	rs79236537-G	0.979654	1E-9		0.0298957	[0.02-0.039] unit decrease	Affymetrix [12370749]	N
1246	chr5	86759712	86759713	rs323759	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	5q14.3	NR	rs323759-?	NR	3E-11				Affymetrix [~ 8270000] (imputed)	N
1247	chr5	86794451	86794452	rs556469928	34620984	Skuladottir AT	2021-10-07	Commun Biol	A genome-wide meta-analysis uncovers six sequence variants conferring risk of vertigo.	Vertigo	48,072 European ancestry cases, 894,541 European ancestry controls	NA	5q14.3		rs556469928-T	NR	4E-6		2.35232		Affymetrix, Illumina [62056310] (imputed)	N
1247	chr5	86802657	86802658	rs62367577	27997041	Traylor M	2016-12-20	Ann Neurol	Genetic variation at 16q24.2 is associated with small vessel stroke.	Large artery stroke	1,877 European ancestry cases, 12,285 European ancestry controls	1,130 European ancestry cases, 17,970 European ancestry controls	5q14.3		rs62367577-?	NR	6E-6		4.534	z score decrease	Affymetrix, Illumina [NR] (imputed)	N
1248	chr5	86904669	86904670	rs62367585	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	5q14.3		rs62367585-?	NR	6E-12				NR [~ 8900000] (imputed)	N
1248	chr5	86946006	86946007	rs7706474	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	5q14.3		rs7706474-C	NR	6E-10		0.0083	[0.0058-0.0108] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1248	chr5	86947590	86947591	rs3919583	29121268	Amare AT	2017-11-09	JAMA Psychiatry	Association of Polygenic Score for Schizophrenia and HLA Antigen and Inflammation Genes With Response to Lithium in Bipolar Affective Disorder: A Genome-Wide Association Study.	Bipolar disorder lithium response (continuous) or schizophrenia	2,366 European ancestry lithium treated bipolar disorder cases, 220 Asian ancestry lithium treated bipolar disorder cases, 36,989 schizophrenia cases, controls (see Ripke et al 2014 PMID:25056061)	NA	5q14.3	CCNH	rs3919583-A		5E-9				NR [NR] (imputed)	N
1248	chr5	86997217	86997218	rs138724790	34074324	Wan JY	2021-06-01	Diabetol Metab Syndr	Genome-wide association analysis of metabolic syndrome quantitative traits in the GENNID multiethnic family study.	Fasting glucose	281 African American individuals from 73 families, 516 European ancestry individuals from 75 families, 125 Japanese American individuals from 15 families, 598 Mexican American individuals from 96 families	NA	5q14.3	CCNH, TMEM161B	rs138724790-C	0.01	4E-8	(African American)	1.93	[1.24-2.62] unit increase	Illumina [up to 13042663] (imputed)	N
1248	chr5	87019455	87019456	rs710398	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5q14.3		rs710398-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1249	chr5	87034351	87034352	rs1673101	23377640	GENDEP Investigators	2013-02-01	Am J Psychiatry	Common genetic variation and antidepressant efficacy in major depressive disorder: a meta-analysis of three genome-wide pharmacogenetic studies.	Major depressive disorder	Up to 2,256 European ancestry cases	NA	5q14.3	RASA1, CCNH	rs1673101-A	0.3312154	4E-6	(% improvement - SSRI treated - 2 weeks)	0.1877	[0.11-0.27] unit decrease	Affymetrix, Illumina [1200000] (imputed)	N
1249	chr5	87083960	87083961	rs7356536	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	5q14.3		rs7356536-T	0.8647	3E-10		0.0129	[0.0088-0.017] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1249	chr5	87083960	87083961	rs7356536	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	5q14.3	Intergenic	rs7356536-T	0.8647	2E-9	(MTAG)	0.0114	[0.0077-0.0151] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1249	chr5	87095249	87095250	rs710369	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	5q14.3	NR	rs710369-C	NR	7E-7		1.1363636	[NR]	Illumina [7158791] (imputed)	N
1249	chr5	87102980	87102981	rs73167517	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	5q14.3	NR	rs73167517-G	0.9131	1E-8		0.0411	[0.027-0.055] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1249	chr5	87103892	87103893	rs73167519	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	5q14.3	NR	rs73167519-?	NR	1E-11				Affymetrix [~ 8270000] (imputed)	N
1249	chr5	87119668	87119669	rs5019341	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling tense	371,318 European ancestry individuals	NA	5q14.3	NR	rs5019341-C	0.241562	1E-8		5.71	z score increase	NR [10847151] (imputed)	N
1249	chr5	87144270	87144271	rs78322942	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	5q14.3	Intergenic	rs78322942-T	0.0253	4E-8	(MTAG)	0.0399	[0.026-0.054] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1249	chr5	87144270	87144271	rs78322942	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	5q14.3	NR	rs78322942-?	NR	1E-7		5.259	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1249	chr5	87154360	87154361	rs10043238	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	5q14.3	CCNH, TMEM161B	rs10043238-?	NR	5E-24		0.7639	[0.62-0.91] unit increase	Affymetrix [11100000] (imputed)	N
1250	chr5	87182651	87182652	rs113040897	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	5q14.3		rs113040897-A	0.021922	7E-6		0.10414	[0.059-0.15] unit increase	Affymetrix [15580782] (imputed)	N
1250	chr5	87209482	87209483	rs10942512	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter beverage consumption	85,852 European ancestry individuals	39,924 European ancestry individuals	5q14.3	TMEM161B	rs10942512-A	0.2931	7E-7		0.0088	[0.0053-0.0123] unit increase	Affymetrix [~ 7740000] (imputed)	N
1250	chr5	87209887	87209888	rs1609352	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter non-alcoholic beverage consumption	85,852 European ancestry individuals	39,924 European ancestry individuals	5q14.3	TMEM161B	rs1609352-T	0.3108	8E-7		0.0086	[0.0053-0.0119] unit increase	Affymetrix [~ 7740000] (imputed)	N
1250	chr5	87247067	87247068	rs16902900	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	5q14.3	NR	rs16902900-A	NR	6E-9		5.828	z score decrease	Affymetrix [10847151] (imputed)	N
1250	chr5	87248374	87248375	rs28738966	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling tense	371,318 European ancestry individuals	NA	5q14.3	TMEM161B	rs28738966-A	0.217446	5E-10		6.22	z score increase	NR [10847151] (imputed)	N
1250	chr5	87278815	87278816	rs16902946	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	5q14.3	NR	rs16902946-C	NR	7E-10		0.01857	[0.013-0.024] unit increase	Affymetrix [10847151] (imputed)	N
1250	chr5	87279374	87279375	rs55940342	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	5q14.3		rs55940342-?	NR	1E-12				NR [~ 8900000] (imputed)	N
1250	chr5	87289370	87289371	rs150531184	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	5q14.3	NR	rs150531184-?	NR	7E-6		4.506	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1250	chr5	87290486	87290487	rs145161642	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	5q14.3		rs145161642-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1251	chr5	87327885	87327886	rs10068110	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	5q14.3	NR	rs10068110-T	0.201	7E-9		0.00955412	[0.0063-0.0128] unit increase	NR [~ 9732723] (imputed)	N
1251	chr5	87377101	87377102	rs1429606	25742292	Aschebrook-Kilfoy B	2015-03-05	PLoS One	Genome-wide association study of parity in Bangladeshi women.	Number of children (6+ vs. 0 or 1)	1,686 Bangladeshi women	NA	5q14.3	NR	rs1429606-?		1E-6		0.23	unit increase	Illumina [1211988] (imputed)	N
1251	chr5	87394291	87394292	rs2217250	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling tense	371,318 European ancestry individuals	NA	5q14.3	NR	rs2217250-C	0.20848	1E-8		5.72	z score decrease	NR [10847151] (imputed)	N
1251	chr5	87401172	87401173	rs76031687	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	5q14.3	NR	rs76031687-?	NR	7E-6		4.49	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1251	chr5	87409131	87409132	rs142193658	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	5q14.3	NR	rs142193658-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1251	chr5	87424764	87424765	rs10070777	32126890	Ter Hark SE	2020-03-04	J Psychopharmacol	A new genetic locus for antipsychotic-induced weight gain: A genome-wide study of first-episode psychosis patients using amisulpride (from the OPTiMiSE cohort).	Weight gain in amisulpride-treated first-episode psychosis	184 European ancestry individuals, 9 African ancestry individuals, 6 Hispanic/Latin American individuals, 3 South Asian ancestry individuals, 2 East Asian ancestry individuals, 2 individuals	NA	5q14.3	TMEM161B	rs10070777-A	0.0743	4E-6		0.8786	NR unit increase	Illumina [4533042] (imputed)	N
1252	chr5	87430301	87430302	rs17286052	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	5q14.3	CCNH, TMEM161B	rs17286052-A		7E-11		0.36	unit increase	Affymetrix [at least 2696785] (imputed)	N
1252	chr5	87430301	87430302	rs17286052	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	5q14.3	CCNH, TMEM161B	rs17286052-A		6E-6		0.167	unit increase	Affymetrix [at least 2696785] (imputed)	N
1252	chr5	87430301	87430302	rs17286052	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	5q14.3	CCNH, TMEM161B	rs17286052-A		3E-8		0.188	unit increase	Affymetrix [at least 2696785] (imputed)	N
1252	chr5	87437078	87437079	rs13168787	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	5q14.3	NR	rs13168787-A	NR	8E-10		6.141	z score decrease	Affymetrix [10847151] (imputed)	N
1252	chr5	87438296	87438296	rs370483555	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	5q14.3		rs370483555-CAT	NR	3E-11		0.0192	[0.014-0.025] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1252	chr5	87466498	87466499	rs10942524	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	5q14.3		rs10942524-A	0.64946	8E-8		0.038332	[0.024-0.052] unit increase	Affymetrix [15580782] (imputed)	N
1252	chr5	87485063	87485064	rs1133152	29728651	Li X	2018-04-27	Neuropsychopharmacology	Common variants on 6q16.2, 12q24.31 and 16p13.3 are associated with major depressive disorder.	Major depressive disorder	84,847 European ancestry cases,  241,266 European ancestry controls, 5,303 Han Chinese ancestry cases, 5,337 Han Chinese ancestry controls	2,659 European ancestry cases, 17,237 European ancestry controls	5q14.3	NR	rs1133152-A	0.132	1E-7		1.0460252	[NR]	Affymetrix, Illumina [at least 1235109] (imputed)	N
1252	chr5	87487966	87487967	rs357508	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA		TMEM161B	rs357508-A	0.1186	6E-9		0.021260519	[0.014-0.028] unit decrease	Affymetrix [11515109] (imputed)	N
1252	chr5	87514514	87514515	rs10059921	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Systolic blood pressure	140,882 European ancestry individuals	190,318 European ancestry individuals	5q14.3	TMEM161B	rs10059921-T	0.08	4E-9		0.526	[0.35-0.7] unit decrease	Affymetrix [~ 9800000] (imputed)	N
1252	chr5	87517877	87517878	rs357512	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	5q14.3	NR	rs357512-T	NR	6E-9		5.818	z score increase	Affymetrix [10847151] (imputed)	N
1252	chr5	87520594	87520595	rs185065	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	5q14.3	NR	rs185065-C	0.498012	9E-11		0.045466058	[0.032-0.059] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1252	chr5	87545317	87545318	rs3099439	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	5q14.3		rs3099439-?	NR	3E-14		0.0225	unit decrease	NR [NR]	N
1252	chr5	87545317	87545318	rs3099439	30718901	Howard DM	2019-02-04	Nat Neurosci	Genome-wide meta-analysis of depression identifies 102 independent variants and highlights the importance of the prefrontal brain regions.	Depression	118,811 European ancestry cases, 327,427 European ancestry controls, 127,552 cases, 233,763 controls	414,055 European ancestry cases, 892,299 European ancestry controls	5q14.3	NR	rs3099439-C	0.4712	2E-21		1.0214505	[1.02-1.03]	NR [8098588] (imputed)	N
1252	chr5	87545317	87545318	rs3099439	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	5q14.3	NR	rs3099439-T	0.472431	4E-8		5.5	z score decrease	NR [10847151] (imputed)	N
1252	chr5	87550094	87550095	rs454822	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	67,764 individuals	NA	5q14.3	NR	rs454822-?		2E-9				NR [8377093]	N
1253	chr5	87576138	87576139	rs61270009	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms	354,862 European ancestry individuals	NA	5q14.3	NR	rs61270009-T	0.2443	3E-9		0.0165	[0.011-0.022] unit increase	Illumina [NR] (imputed)	N
1253	chr5	87586984	87586985	rs17547627	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	5q14.3		rs17547627-C	0.036653	3E-8		0.09869	[0.064-0.134] unit increase	Affymetrix [15580782] (imputed)	N
1253	chr5	87586984	87586985	rs17547627	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	5q14.3		rs17547627-C	0.036653	4E-15		0.1428	[0.11-0.18] unit increase	Affymetrix [15580782] (imputed)	N
1253	chr5	87592236	87592237	rs13177755	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms (MTAG)	354,862 European ancestry individuals	NA	5q14.3	NR	rs13177755-T	0.2441	3E-9		0.0147	[0.0098-0.0196] unit increase	Illumina [NR] (imputed)	N
1253	chr5	87597011	87597012	rs1367233	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	5q14.3	TMEM161B, MEF2C	rs1367233-A	0.7486	3E-19		1.0339		Affymetrix [11880941] (imputed)	N
1253	chr5	87598817	87598818	rs2115885	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	5q14.3	TMEM161B	rs2115885-G	0.791515	9E-10		0.0106168	[0.0072-0.014] unit increase	Affymetrix [12370749]	N
1253	chr5	87630768	87630769	rs247910	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	5q14.3	TMEM161B	rs247910-?		3E-9				NR [6786993] (imputed)	N
1253	chr5	87633757	87633758	rs247911	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	5q14.3	NR	rs247911-G	0.473587563438305	4E-10		0.0057622506	[0.004-0.0076] unit increase	NR [NR]	N
1253	chr5	87633757	87633758	rs247911	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	5q14.3	NR	rs247911-G	0.473587563438305	1E-10		0.010942309	[0.0076-0.0143] unit increase	NR [NR]	N
1253	chr5	87633757	87633758	rs247911	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	5q14.3	NR	rs247911-G	0.473587563438305	6E-11		0.007015598	[0.0049-0.0091] unit increase	NR [NR]	N
1253	chr5	87647583	87647584	rs10942529	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	5q14.3	NR	rs10942529-T	NR	2E-11		6.715	z score increase	Affymetrix [10847151] (imputed)	N
1253	chr5	87655661	87655662	rs12515274	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Ease of getting up in the morning	385,949 European ancestry individuals	NA	5q14.3	NR	rs12515274-A	0.2523	5E-10		0.0123	[0.0084-0.0162] unit decrease	Affymetrix, Illumina [10862568] (imputed)	N
1253	chr5	87659979	87659980	rs4916907	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	5q14.3	NA	rs4916907-G	0.252	3E-11	(Male)	1.0775862	[1.06-1.10]	Affymetrix, Illumina [NR] (imputed)	N
1253	chr5	87661592	87661593	rs12657776	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	5q14.3		rs12657776-A	0.7482	4E-14		0.019	[0.015-0.023] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
1253	chr5	87661592	87661593	rs12657776	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	5q14.3		rs12657776-?	NR	6E-8				NR [~ 8900000] (imputed)	N
1253	chr5	87662319	87662320	rs13157159	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter alcoholic beverage consumption	336,448 European ancestry individuals	39,924 European ancestry individuals	5q14.3	TMEM161B-AS1	rs13157159-T	0.2078	8E-11		0.0082	[0.0057-0.0107] unit increase	Affymetrix [~ 7740000] (imputed)	N
1253	chr5	87663609	87663610	rs10514299	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Smoking status (ever vs never smokers)	336,066 British ancestry individuals	NA	5q14.3	NR	rs10514299-?	NR	4E-6		1.026694	[1.02-1.04]	NR [8968716] (imputed)	N
1253	chr5	87663609	87663610	rs10514299	27479909	Hyde CL	2016-08-01	Nat Genet	Identification of 15 genetic loci associated with risk of major depression in individuals of European descent.	Major depressive disorder	84,847 European ancestry cases, 241,266 European ancestry controls	45,773 European ancestry cases, 106,354 European ancestry controls	5q14.3	TMEM161B, MEF2C	rs10514299-T	0.240584	1E-15		0.0449	[0.031-0.059] unit increase	Illumina [1220000] (imputed)	N
1253	chr5	87666304	87666305	rs12188167	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	5q14.3	NR	rs12188167-G	NR	5E-8		0.01581	[0.01-0.021] unit decrease	Affymetrix [10847151] (imputed)	N
1253	chr5	87678584	87678585	rs1430205	30804566	Lane JM	2019-02-25	Nat Genet	Biological and clinical insights from genetics of insomnia symptoms.	Insomnia symptoms (never/rarely vs. usually)	129,270 European ancestry cases, 108,357 European ancestry controls	17,140 European ancestry cases, 61,850 European ancestry controls	5q14.3	LOC100130786/LOC645323	rs1430205-T	0.45803799999999995	3E-8		1.02	[1.01-1.03]	Affymetrix [14661600] (imputed)	N
1253	chr5	87678584	87678585	rs1430205	30804566	Lane JM	2019-02-25	Nat Genet	Biological and clinical insights from genetics of insomnia symptoms.	Insomnia symptoms (never/rarely vs. sometimes/usually)	345,022 European ancestry cases, 108,357 European ancestry controls	17,140 European ancestry cases, 61,850 European ancestry controls	5q14.3	LOC100130786/LOC645323	rs1430205-T	0.45803799999999995	7E-8		1.02	[1.01-1.03]	Affymetrix [14661600] (imputed)	N
1253	chr5	87680993	87680994	rs6452784	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking cessation (MTAG)	up to 820,192 European ancestry individuals	NA	5q14.3	NR	rs6452784-G	0.467	2E-9		0.0092739	[0.0063-0.0123] unit decrease	NR [9732723] (imputed)	N
1253	chr5	87682876	87682877	rs7442885	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urinary sodium excretion	332,397 European ancestry individuals, 5,781 African ancestry individuals, 6,993 South Asian ancestry individuals	NA	5q14.3	NR	rs7442885-G	NR	2E-10		0.0187	[0.013-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
1253	chr5	87682876	87682877	rs7442885	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	5q14.3	NR	rs7442885-C	0.790175	2E-8		0.0143977	[0.0094-0.0194] unit increase	NR [NR]	N
1253	chr5	87682876	87682877	rs7442885	31409800	Pazoki R	2019-08-13	Nat Commun	GWAS for urinary sodium and potassium excretion highlights pathways shared with cardiovascular traits.	Urinary sodium excretion	446,237 European ancestry individuals	7,612 African ancestry individuals, 10,095 South Asian ancestry individuals	5q14.3	STK24	rs7442885-C	0.786513	2E-9	(EA)	0.00905755	[0.0061-0.012] unit increase	Affymetrix [~ 8800000] (imputed)	N
1253	chr5	87685499	87685500	rs6452785	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	5q14.3		rs6452785-C	0.532	4E-32		0.014	[0.012-0.016] unit increase	NR [NR] (imputed)	N
1253	chr5	87685499	87685500	rs6452785	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	5q14.3	NR	rs6452785-T	0.474	5E-26		0.02688271	[0.022-0.032] unit decrease	NR [~ 10000000] (imputed)	N
1254	chr5	87693560	87693561	rs16903122	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	5q14.3	NR	rs16903122-T	0.2487	9E-16		1.057	[1.04-1.07]	Affymetrix, Illumina [NR] (imputed)	N
1254	chr5	87695669	87695669	rs11379773	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-3 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	5q14.3		rs11379773-G	0.786588	2E-8		0.0274232	[0.018-0.037] unit decrease	NR [11722792] (imputed)	N
1254	chr5	87697532	87697533	rs6870983	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	5q14.3	NR	rs6870983-C	0.7415	6E-9		0.0287	[0.019-0.038] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1254	chr5	87697532	87697533	rs6870983	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		5q14.3	TMEM161B	rs6870983-C	0.78596	2E-16		0.0137971	[0.011-0.017] unit increase	Affymetrix [12370749]	N
1254	chr5	87697532	87697533	rs6870983	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	5q14.3	NR	rs6870983-T	0.2093	3E-13		0.02250481	[0.016-0.029] unit decrease	Affymetrix [10549349] (imputed)	N
1254	chr5	87697532	87697533	rs6870983	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	5q14.3	NR	rs6870983-C	NR	9E-12		0.02	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
1254	chr5	87697532	87697533	rs6870983	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	5q14.3	Intergenic	rs6870983-C	0.7646	3E-11		0.0178	[0.013-0.023] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1254	chr5	87697532	87697533	rs6870983	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	5q14.3	LOC645323	rs6870983-C	0.7798	7E-7	(EA)	0.0246	[0.015-0.034] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1254	chr5	87697532	87697533	rs6870983	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	5q14.3	LOC645323	rs6870983-C	0.7591	5E-6		0.0215	[0.012-0.031] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1254	chr5	87697532	87697533	rs6870983	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	5q14.3	LOC645323	rs6870983-?	NR	8E-7				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1254	chr5	87697532	87697533	rs6870983	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	5q14.3	LOC645323	rs6870983-?	NR	1E-7	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1254	chr5	87697532	87697533	rs6870983	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	5q14.3	LOC645323	rs6870983-C	0.7798	3E-8	(EA)	0.0248	[0.016-0.034] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1254	chr5	87697532	87697533	rs6870983	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	5q14.3	LOC645323	rs6870983-C	0.7591	4E-8		0.0227	[0.015-0.031] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1254	chr5	87697532	87697533	rs6870983	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	5q14.3	TMEM161B, LINC00461, MIR9-2, MEF2C	rs6870983-T	0.219183857303411	7E-10		0.01985636	unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1254	chr5	87697532	87697533	rs6870983	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	5q14.3	LOC100505894	rs6870983-C	0.782	4E-7	(EA)	0.018	[0.011-0.025] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1254	chr5	87697532	87697533	rs6870983	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	5q14.3	LOC100505894	rs6870983-C	0.768	8E-7		0.017	[0.01-0.024] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1254	chr5	87700414	87700415	rs78672637	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	5q14.3	NR	rs78672637-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
1254	chr5	87701222	87701223	rs4269995	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	5q14.3	TMEM161B, MEF2C	rs4269995-C	0.749	6E-20		1.0345541		Affymetrix [11880941] (imputed)	N
1254	chr5	87701222	87701223	rs4269995	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	5q14.3	TMEM161B, MEF2C	rs4269995-C	0.749	6E-20		1.0344812		Affymetrix [11880941] (imputed)	N
1254	chr5	87703098	87703099	rs7445169	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	5q14.3	Intergenic	rs7445169-C	0.7654	4E-10	(MTAG)	0.0132	[0.0091-0.0173] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1254	chr5	87703398	87703399	rs34630690	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	5q14.3		rs34630690-G	NR	2E-11		0.0195	[0.014-0.025] unit decrease	Affymetrix, Illumina [20529698] (imputed)	N
1254	chr5	87705267	87705268	rs2410767	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	5q14.3	NR	rs2410767-G	0.2211	7E-9		0.0325	[0.022-0.043] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
1254	chr5	87705267	87705268	rs2410767	31636452	Satizabal CL	2019-10-21	Nat Genet	Genetic architecture of subcortical brain structures in 38,851 individuals.	Putamen volume	37,571 European ancestry individuals	341 South East and East Asian ancestry individuals, 769 African American individuals	5q14.3	NR	rs2410767-C	0.7714	4E-9		5.891	NR z score increase	Affymetrix, Illumina [NR] (imputed)	N
1254	chr5	87705267	87705268	rs2410767	31636452	Satizabal CL	2019-10-21	Nat Genet	Genetic architecture of subcortical brain structures in 38,851 individuals.	Caudate nucleus volume	37,741 European ancestry individuals	341 South East and East Asian ancestry individuals, 769 African American individuals	5q14.3	NR	rs2410767-C	0.7759	9E-6	(EA)	4.452023	NR z score increase	Affymetrix, Illumina [NR] (imputed)	N
1254	chr5	87705281	87705282	rs10514300	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	5q14.3	NR	rs10514300-?	NR	3E-8	(right putamen)			NR [9227495] (imputed)	N
1254	chr5	87712518	87712519	rs7708715	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	5q14.3	NR	rs7708715-A	0.462	1E-19		0.0132138	[0.01-0.016] unit increase	NR [9732723] (imputed)	N
1254	chr5	87712830	87712831	rs6452787	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	5q14.3	NR	rs6452787-G	0.473	3E-31		0.012548	[0.01-0.015] unit decrease	NR [9732723] (imputed)	N
1254	chr5	87712912	87712913	rs6452788	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of docosahexaenoic acid to total fatty acid levels	115,006 European ancestry individuals	NA	5q14.3		rs6452788-G	0.760042	1E-8		0.0265588	[0.017-0.036] unit decrease	NR [11722792] (imputed)	N
1254	chr5	87712912	87712913	rs6452788	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	5q14.3	NR	rs6452788-G		5E-9		0.07	[0.05-0.09] unit increase	NR [NR]	N
1254	chr5	87712912	87712913	rs6452788	31263887	Adams MJ	2019-07-01	Int J Epidemiol	Factors associated with sharing e-mail information and mental health survey participation in large population cohorts.	Mental health study participation (provided email address)	224,321 British ancestry cases, 147,096 British ancestry controls	NA	5q14.3	TMEM161B-AS1, CTC-498M16.2	rs6452788-A	0.24	3E-9		0.0075061	[0.005-0.01] unit increase	NR [16367095] (imputed)	N
1254	chr5	87712912	87712913	rs6452788	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	5q14.3		rs6452788-?	NR	1E-7				NR [~ 8900000] (imputed)	N
1254	chr5	87712912	87712913	rs6452788	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	5q14.3	NR	rs6452788-?	NR	2E-6		4.786	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1254	chr5	87714703	87714704	rs10474277	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Alcohol consumption (drinks per week)	414,343 European ancestry individuals	NA	5q14.3	TMEM161B	rs10474277-A	0.8841	2E-8		0.0196681	[0.013-0.027] unit decrease	Affymetrix [11514936] (imputed)	N
1254	chr5	87726562	87726563	rs78440979	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	5q14.3		rs78440979-A	0.035972	2E-7		0.094239	[0.059-0.13] unit increase	Affymetrix [15580782] (imputed)	N
1254	chr5	87726562	87726563	rs78440979	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	5q14.3		rs78440979-A	0.035972	4E-14		0.13873	[0.1-0.17] unit increase	Affymetrix [15580782] (imputed)	N
1254	chr5	87727103	87727104	rs35017470	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	65,967 individuals	NA	5q14.3	NR	rs35017470-?		1E-9				NR [8377093]	N
1254	chr5	87729710	87729711	rs6414946	30617275	Erzurumluoglu AM	2019-01-07	Mol Psychiatry	Meta-analysis of up to 622,409 individuals identifies 40 novel smoking behaviour associated genetic loci.	Smoking initiation	324,851 European ancestry individuals, 21,962 South Asian ancestry individuals	up to 275,596 European ancestry individuals	5q14.3	TMEM161B	rs6414946-C	0.32	5E-10		0.0137	[0.0078-0.0196] unit decrease (replication)	Affymetrix, Illumina [up to 1207583] (imputed)	N
1254	chr5	87730026	87730027	rs7444298	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	5q14.3		rs7444298-?	NR	5E-18				NR [~ 8900000] (imputed)	N
1254	chr5	87744013	87744014	rs115114609	29703844	van Zuydam NR	2018-04-27	Diabetes	A Genome-Wide Association Study of Diabetic Kidney Disease in Subjects With Type 2 Diabetes.	Glomerular filtration rate in type 2 diabetes	9,197 European ancestry individuals	9,333 European ancestry individuals, 7,405 Asian individuals, 975 Chinese ancestry individuals, 384 Indian ancestry individuals, 307 Malay ancestry individuals	5q14.3	NR	rs115114609-?		7E-7		5.8	[3.51-8.09] unit increase	Affymetrix, Illumina [up to 9343778] (imputed)	N
1254	chr5	87752140	87752141	rs56324019	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	5q14.3	NR	rs56324019-T	NR	2E-11		6.69	z score decrease	Affymetrix [10847151] (imputed)	N
1254	chr5	87752140	87752141	rs56324019	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	5q14.3	TMEM161B	rs56324019-T	0.170122	8E-9		5.77	z score decrease	NR [10847151] (imputed)	N
1254	chr5	87753081	87753082	rs114369210	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	5q14.3	NR	rs114369210-A	NR	2E-8		5.6	z score increase	Affymetrix [10847151] (imputed)	N
1254	chr5	87755410	87755411	rs62369123	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	5q14.3	Intergenic	rs62369123-A	0.7668	2E-10	(MTAG)	0.0173	[0.012-0.023] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1254	chr5	87756707	87756708	rs6452790	25644384	Davies G	2015-02-03	Mol Psychiatry	Genetic contributions to variation in general cognitive function: a meta-analysis of genome-wide association studies in the CHARGE consortium (N=53949).	Cognitive function	51,719 European ancestry individuals, 1,473 Erasmus Rucphen (founder/genetic isolate) individuals, 327 Korculan (founder/genetic isolate) individuals, 430 Orcadian (founder/genetic isolate) individuals	NA	5q14.3	TMEM161B_AS1	rs6452790-?	NR	1E-6		0.0314	[0.019-0.044] unit increase	Affymetrix, Illumina [2478500] (imputed)	N
1254	chr5	87756917	87756918	rs4571506	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking initiation	842,717 European ancestry individuals	NA	5q14.3	LOC102546226, LINC00461	rs4571506-T		9E-11		0.978	[NR]	Affymetrix [up to 79000000] (imputed)	N
1254	chr5	87756917	87756918	rs4571506	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	5q14.3		rs4571506-C	0.54	2E-8		0.011	[0.0071-0.0149] unit increase	Affymetrix [up to 90000000] (imputed)	N
1254	chr5	87765657	87765658	rs9293499	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	5q14.3	NR	rs9293499-?	NR	8E-13				Affymetrix [~ 8270000] (imputed)	N
1254	chr5	87767158	87767160	rs141622289	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	5q14.3		rs141622289-G	NR	3E-9		0.0155	[0.01-0.021] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1254	chr5	87767158	87767160	rs141622289	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	5q14.3		rs141622289-G	NR	4E-12		0.018	[0.013-0.023] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
1254	chr5	87771092	87771093	rs6452791	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	5q14.3	MEF2C	rs6452791-A	0.5434	5E-9		0.011770435	[0.0078-0.0157] unit increase	Affymetrix [11514654] (imputed)	N
1254	chr5	87771092	87771093	rs6452791	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	5q14.3		rs6452791-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1254	chr5	87773315	87773316	rs10042588	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	5q14.3		rs10042588-A	NR	2E-9		0.0248	[0.017-0.033] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
1254	chr5	87773317	87773318	rs10042590	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	5q14.3		rs10042590-?	NR	1E-11				NR [~ 8900000] (imputed)	N
1254	chr5	87775690	87775691	rs7706932	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Anxiety	at least 23,606 European ancestry cases, at least 113,351 European ancestry controls	624,615 European ancestry cases, 1,310,854 European ancestry controls	5q14.3	CTC, 498M16.4	rs7706932-T	0.4583	2E-22		0.022358943	[0.017-0.028] unit decrease	NR [9417325] (imputed)	N
1254	chr5	87780431	87780432	rs17419291	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	5q14.3	NR	rs17419291-C	NR	1E-10		0.0279	[0.019-0.036] unit decrease	Affymetrix [9000000] (imputed)	N
1254	chr5	87781167	87781168	rs10044618	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking initiation (ever regular vs never regular)	up to 433,216 European ancestry individuals	NA	5q14.3	LOC645323	rs10044618-T	0.432	5E-12		0.0159	[0.011-0.02] unit decrease	Illumina [~ 250000] (imputed)	N
1254	chr5	87783712	87783713	rs2067919	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	5q14.3	NR	rs2067919-T	NR	4E-9		5.868	z score decrease	Affymetrix [10847151] (imputed)	N
1254	chr5	87783712	87783713	rs2067919	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling tense	371,318 European ancestry individuals	NA	5q14.3	NR	rs2067919-T	0.343578	7E-9		5.8	z score decrease	NR [10847151] (imputed)	N
1254	chr5	87792843	87792844	rs6452792	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	5q14.3	NA	rs6452792-G		2E-37		0.0238974	[0.02-0.028] unit increase	Illumina [13288253] (imputed)	N
1254	chr5	87792843	87792844	rs6452792	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	5q14.3	MEF2C	rs6452792-A	0.5138	7E-16		0.019112729	[0.014-0.024] unit decrease	Affymetrix [11515109] (imputed)	N
1254	chr5	87795524	87795525	rs7737179	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	5q14.3		rs7737179-A	0.2761	2E-8		41.978577	z score increase	NR [6814003]	N
1254	chr5	87795524	87795525	rs7737179	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	5q14.3	TMEM161B, MEF2C	rs7737179-?		3E-23				Affymetrix, Illumina [NR] (imputed)	N
1254	chr5	87795524	87795525	rs7737179	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	5q14.3	TMEM161B-AS1, LINC00461	rs7737179-A	0.2542	3E-8		5.527	[NR] z score decrease	Affymetrix, Illumina [~ 11000000] (imputed)	N
1254	chr5	87798235	87798236	rs2194025	23776548	Sim X	2013-06-12	PLoS One	Genetic loci for retinal arteriolar microcirculation.	Retinal arteriolar caliber	18,722 European ancestry individuals	3,939 European ancestry individuals	5q14.3	TMEM161B, MEF2C	rs2194025-G	0.91	2E-12		1.6	[1.15-2.05] unit decrease	Illumina [2137729] (imputed)	N
1254	chr5	87813970	87813971	rs73173548	28250457	Scerri TS	2017-02-27	Nat Genet	Genome-wide analyses identify common variants associated with macular telangiectasia type 2.	Macular telangiectasia type 2	476 European ancestry cases, 1,733 European ancestry controls	172 European ancestry cases, 1,134 European ancestry controls	5q14.3	LINC00461, TMEM161B	rs73173548-G	0.0807	7E-20		2.4	[1.99-2.90]	Illumina [6310381] (imputed)	N
1254	chr5	87818173	87818174	rs6452793	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	5q14.3	LINC00461	rs6452793-T	0.2196	2E-8		0.013385837	[0.0087-0.0181] unit increase	Affymetrix [up to 18485882] (imputed)	N
1254	chr5	87818173	87818174	rs6452793	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	5q14.3		rs6452793-T	0.234	4E-26		0.0175	[0.014-0.021] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1255	chr5	87822671	87822672	rs2194027	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	5q14.3	NR	rs2194027-A	NR	6E-10		0.01502	[0.01-0.02] unit decrease	Affymetrix [10847151] (imputed)	N
1255	chr5	87825489	87825490	rs2194028	32989287	Cuellar-Partida G	2020-09-28	Nat Hum Behav	Genome-wide association study identifies 48 common genetic variants associated with handedness.	Left-handedness	1,766,671 European ancestry individuals	NA	5q14.3	TMEM161B-AS1	rs2194028-T	0.3387	5E-11		1.0222625	[NR]	Illumina [12493444] (imputed)	N
1255	chr5	87830535	87830536	rs73173591	31809533	Han X	2019-09-06	Hum Mol Genet	Genome-wide association analysis of 95 549 individuals identifies novel loci and genes influencing optic disc morphology.	Optic disc size	67,040 British ancestry individuals	28,509 European ancestry individuals	5q14.3	LINC00461	rs73173591-A	0.09	3E-19		0.03	unit increase	Affymetrix [8928767] (imputed)	N
1255	chr5	87836306	87836307	rs17421410	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (multi-trait analysis)	90,939 European ancestry individuals	NA	5q14.3	LOC102546226, LINC00461	rs17421410-A	0.93	1E-8		0.0094	NR unit decrease	Affymetrix, Illumina [8002429] (imputed)	N
1255	chr5	87847272	87847273	rs12653396	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	5q14.3	LINC00461	rs12653396-T	0.431702	2E-21		0.0199438	[0.016-0.024] unit increase	NR [16516521] (imputed)	N
1255	chr5	87847272	87847273	rs12653396	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	5q14.3	NR	rs12653396-T	0.449304	5E-13		0.05100673	[0.037-0.065] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1255	chr5	87847272	87847273	rs12653396	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	5q14.3	NR	rs12653396-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
1255	chr5	87847272	87847273	rs12653396	30818988	Klein M	2019-03-01	Am J Psychiatry	Genetic Markers of ADHD-Related Variations in Intracranial Volume.	Attention deficit hyperactivity disorder or caudate nucleus volume (pleiotropy)	19,099 European ancestry ADHD cases, 1,084 ADHD cases, 34,194 European ancestry controls, 997 controls, 11,772 European ancestry individuals	NA	5q14.3	LINC00461	rs12653396-A	NR	1E-9		5.38	NR z score increase	NR [up to 8615485] (imputed)	N
1255	chr5	87847272	87847273	rs12653396	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	5q14.3	Intergenic	rs12653396-A	0.5507	4E-24	(MTAG)	0.0168	[0.013-0.02] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1255	chr5	87847272	87847273	rs12653396	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	5q14.3		rs12653396-A	0.5597	1E-13	(conditional-joint)	0.0116	[0.0085-0.0147] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1255	chr5	87847272	87847273	rs12653396	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	5q14.3	Intergenic	rs12653396-A	0.5597	2E-33	(MTAG)	0.0159	[0.013-0.018] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1255	chr5	87847272	87847273	rs12653396	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	5q14.3	NR	rs12653396-A	0.5615	8E-9		0.012945342	NR unit decrease	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
1255	chr5	87847585	87847586	rs17421627	33979322	Currant H	2021-05-12	PLoS Genet	Genetic variation affects morphological retinal phenotypes extracted from UK Biobank optical coherence tomography images.	Retinal nerve fibre layer thickness or ganglion cell inner plexiform layer thickness (MTAG)	31,434 European ancestry individuals	NA	5q14.3	NR	rs17421627-G	0.07	8E-27		0.97	[0.79-1.15] unit increase	Affymetrix [9231066] (imputed)	N
1255	chr5	87847585	87847586	rs17421627	33979322	Currant H	2021-05-12	PLoS Genet	Genetic variation affects morphological retinal phenotypes extracted from UK Biobank optical coherence tomography images.	Ganglion cell inner plexiform layer (GCIPL) thickness	31,434 European ancestry individuals	NA	5q14.3	NR	rs17421627-G	0.07	8E-27		0.97	[0.79-1.15] unit increase	Affymetrix [9231066] (imputed)	N
1255	chr5	87847585	87847586	rs17421627	33654266	Bonelli R	2021-03-02	Commun Biol	Identification of genetic factors influencing metabolic dysregulation and retinal support for MacTel, a retinal disorder.	Macular telangiectasia type 2	931 European ancestry cases, 3,745 European ancestry controls	NA	5q14.3	TMEM161B	rs17421627-G	0.069	1E-16			NR	Illumina [7289516] (imputed)	N
1255	chr5	87847585	87847586	rs17421627	33654266	Bonelli R	2021-03-02	Commun Biol	Identification of genetic factors influencing metabolic dysregulation and retinal support for MacTel, a retinal disorder.	Macular telangiectasia type 2	1,067 European or unknown ancestry cases, 3,799 European or unknown ancestry controls	NA	5q14.3	TMEM161B	rs17421627-G	0.069	5E-17		2.31	[1.9-2.81]	Illumina [7289516] (imputed)	N
1255	chr5	87847585	87847586	rs17421627	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	5q14.3	LINC00461	rs17421627-?	NR	5E-120		2.992	[2.74-3.25] unit decrease	Affymetrix [11100000] (imputed)	N
1255	chr5	87847585	87847586	rs17421627	21060863	Ikram MK	2010-10-28	PLoS Genet	Four novel Loci (19q13, 6q24, 12q24, and 5q14) influence the microcirculation in vivo.	Retinal vascular caliber	15,358 European ancestry individuals	6,652 European ancestry individuals	5q14.3	MEF2C	rs17421627-G	0.08	7E-16	(Retinal venular caliber)	3.0	[2.27-3.73] um increase	Affymetrix, Illumina [2194468] (imputed)	N
1255	chr5	87847991	87847992	rs75048985	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	5q14.3		rs75048985-A	0.074847	7E-14		0.095007	[0.07-0.12] unit increase	Affymetrix [15580782] (imputed)	N
1255	chr5	87854394	87854395	rs4916723	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Major depressive disorder vs autism spectrum disorder (ordinary least squares (OLS))	170,756 MDD cases, 18,381 autism spectrum disorder cases	NA	5q14.3		rs4916723-?	NR	5E-8		0.0108	NR unit decrease	NR [6057537] (imputed)	N
1255	chr5	87854394	87854395	rs4916723	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Attention deficit hyperactivity disorder	55,374 individuals	NA	5q14.3	NR	rs4916723-?		2E-8				NR [8028859]	N
1255	chr5	87854394	87854395	rs4916723	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol consumption (drinks per week) (MTAG)	972,915 European ancestry individuals	NA	5q14.3	NR	rs4916723-C	0.404	9E-10		0.011411703	[0.0078-0.0151] unit decrease	Affymetrix [NR] (imputed)	N
1255	chr5	87854394	87854395	rs4916723	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	5q14.3	Intergenic	rs4916723-?		2E-9				NR [6786993] (imputed)	N
1255	chr5	87854394	87854395	rs4916723	31358974	Evangelou E	2019-07-29	Nat Hum Behav	New alcohol-related genes suggest shared genetic mechanisms with neuropsychiatric disorders.	Alcohol consumption	480,842 European ancestry individuals	NA	5q14.3	LINC00461, MEF2C	rs4916723-A	0.58	2E-10		0.007	[0.005-0.009] unit increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1255	chr5	87854394	87854395	rs4916723	30804558	Grove J	2019-02-25	Nat Genet	Identification of common genetic risk variants for autism spectrum disorder.	Autism spectrum disorder	18,381 European ancestry cases, 27,969 European ancestry controls	2,119 European ancestry cases, 142,379 European ancestry controls	5q14.3	Intergenic	rs4916723-C	0.428	3E-6		1.0626993	[NR]	Illumina [9112387] (imputed)	N
1255	chr5	87854394	87854395	rs4916723	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Alcohol consumption (drinks per week)	414,343 European ancestry individuals	NA	5q14.3	MEF2C	rs4916723-A	0.5775	1E-11		0.015352736	[0.011-0.02] unit increase	Affymetrix [11514936] (imputed)	N
1255	chr5	87854394	87854395	rs4916723	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week)	up to 941,280 European ancestry individuals	NA	5q14.3	NR	rs4916723-C	0.416	2E-11		0.009952257	[0.0071-0.0129] unit decrease	NR [~ 10000000] (imputed)	N
1255	chr5	87854394	87854395	rs4916723	30610198	Soler Artigas M	2019-01-04	Mol Psychiatry	Attention-deficit/hyperactivity disorder and lifetime cannabis use: genetic overlap and causality.	Attention deficit hyperactivity disorder or cannabis use	18,345 European ancestry ADHD cases, 14,374 European ancestry cannabis use cases, 50,410 European ancestry controls	NA	5q14.3	LINC00461	rs4916723-C	NR	2E-9		1.0752687	[1.05-1.1]	NR [5009020] (imputed)	N
1255	chr5	87854394	87854395	rs4916723	30478444	Demontis D	2018-11-26	Nat Genet	Discovery of the first genome-wide significant risk loci for attention deficit/hyperactivity disorder.	Attention deficit hyperactivity disorder	19,099 European ancestry cases, 72 non-European ancestry cases, 1,012 Han Chinese ancestry cases, 34,194 European ancestry controls, 72 non-European ancestry controls, 925 Han Chinese ancestry controls	5,085 Icelandic ancestry cases, 5,857 cases, 131,122 Icelandic ancestry controls, 70,393 controls	5q14.3	LINC00461	rs4916723-C	NR	7E-7		1.025	NR	Affymetrix, Illumina, Perlegen [8047421] (imputed)	N
1255	chr5	87854394	87854395	rs4916723	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	5q14.3	NR	rs4916723-A	NR	2E-8		5.609	z score increase	Affymetrix [10847151] (imputed)	N
1255	chr5	87854416	87854417	rs4916724	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	5q14.3		rs4916724-C	0.206	2E-18		0.013	[0.011-0.015] unit decrease	NR [NR] (imputed)	N
1255	chr5	87855859	87855860	rs7710776	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	6-month creatinine clearance change response to tenofovir treatment in HIV infection (treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	5q14.3	NR	rs7710776-?		3E-6	(EA)			Illumina [~ 5140000] (imputed)	N
1255	chr5	87856058	87856059	rs10071077	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	6-month creatinine clearance change response to tenofovir treatment in HIV infection (treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	5q14.3	NR	rs10071077-?		3E-6	(EA)			Illumina [~ 5140000] (imputed)	N
1255	chr5	87861099	87861100	rs324884	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	6-month creatinine clearance change response to tenofovir treatment in HIV infection (treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	5q14.3	NR	rs324884-?		3E-6	(EA)			Illumina [~ 5140000] (imputed)	N
1255	chr5	87865364	87865365	rs13328187	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	5q14.3	NR	rs13328187-C	NR	4E-10		0.01711	[0.012-0.022] unit increase	Affymetrix [10847151] (imputed)	N
1255	chr5	87868164	87868165	rs34142155	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	5q14.3	NR	rs34142155-?	NR	5E-9				Affymetrix [~ 8270000] (imputed)	N
1255	chr5	87879467	87879468	rs2438466	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	6-month creatinine clearance change response to tenofovir treatment in HIV infection (treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	5q14.3	NR	rs2438466-?		4E-6	(EA)			Illumina [~ 5140000] (imputed)	N
1255	chr5	87879467	87879468	rs2438466	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	6-month creatinine clearance change response to tenofovir treatment in HIV infection (treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	5q14.3	NR	rs2438466-?		4E-6	(EA)			Illumina [~ 5140000] (imputed)	N
1255	chr5	87883837	87883838	rs56022653	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Attention deficit hyperactivity disorder (MTAG)	61,421 individuals	NA	5q14.3	NR	rs56022653-?		2E-8				NR [520857]	N
1255	chr5	87894645	87894646	rs2112424	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	6-month creatinine clearance change response to tenofovir treatment in HIV infection (treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	5q14.3	NR	rs2112424-?		4E-6	(EA)			Illumina [~ 5140000] (imputed)	N
1255	chr5	87894645	87894646	rs2112424	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	6-month creatinine clearance change response to tenofovir treatment in HIV infection (treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	5q14.3	NR	rs2112424-?		3E-6	(EA)			Illumina [~ 5140000] (imputed)	N
1255	chr5	87896329	87896330	rs226488	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Major depressive disorder vs ADHD (ordinary least squares (OLS))	170,756 MDD cases, 19,099 ADHD cases	NA	5q14.3		rs226488-?	NR	2E-10		0.0146	NR unit decrease	NR [5568121] (imputed)	N
1255	chr5	87897270	87897271	rs324885	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	5q14.3	LINC00461	rs324885-C	0.4744	7E-9		0.011723891	[0.0078-0.0157] unit decrease	Affymetrix [up to 18485882] (imputed)	N
1255	chr5	87897270	87897271	rs324885	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	5q14.3		rs324885-A	0.5257	4E-24		0.0142	[0.011-0.017] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1255	chr5	87908893	87908894	rs10068637	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	5q14.3	NR	rs10068637-A	NR	3E-9		5.93	z score increase	Affymetrix [10847151] (imputed)	N
1255	chr5	87908893	87908894	rs10068637	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling tense	371,318 European ancestry individuals	NA	5q14.3	NR	rs10068637-A	0.276084	2E-8		5.61	z score increase	NR [10847151] (imputed)	N
1255	chr5	87909876	87909877	rs1644039	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	5q14.3	NR	rs1644039-T	NR	3E-12		6.971	z score decrease	Affymetrix [10847151] (imputed)	N
1255	chr5	87914526	87914527	rs324898	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	6-month creatinine clearance change response to tenofovir treatment in HIV infection (treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	5q14.3	NR	rs324898-?		3E-6	(EA)			Illumina [~ 5140000] (imputed)	N
1255	chr5	87915581	87915582	rs324899	29121268	Amare AT	2017-11-09	JAMA Psychiatry	Association of Polygenic Score for Schizophrenia and HLA Antigen and Inflammation Genes With Response to Lithium in Bipolar Affective Disorder: A Genome-Wide Association Study.	Bipolar disorder lithium response (categorical) or schizophrenia	704 European and East Asian ancestry lithium responder bipolar disorder cases, 1,662 European and East Asian ancestry lithium non-responder bipolar disorder controls, 36,989 schizophrenia cases, controls (see Ripke 2014 PMID:25056061).	NA	5q14.3	MEF2C	rs324899-A		2E-8				NR [NR] (imputed)	N
1255	chr5	87919699	87919700	rs115456027	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Vertical cup-disc ratio	25,180 European ancestry individuals	NA	5q14.3	LINC00461	rs115456027-T	0.078	2E-10		0.016	[0.01-0.022] unit increase	Affymetrix, Illumina [11901698] (imputed)	N
1255	chr5	87929868	87929869	rs10060622	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	5q14.3	NR	rs10060622-C	0.282596689040602	1E-8		0.0106537985	[0.007-0.0143] unit increase	NR [NR]	N
1255	chr5	87929868	87929869	rs10060622	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	5q14.3	NR	rs10060622-C	0.282596689040602	1E-8		0.0067980955	[0.0045-0.0091] unit increase	NR [NR]	N
1255	chr5	87929868	87929869	rs10060622	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	5q14.3		rs10060622-?	NR	9E-8				NR [~ 8900000] (imputed)	N
1255	chr5	87934706	87934707	rs10061788	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	5q14.3	LINC00461	rs10061788-A	0.1697	8E-10		0.016225446	[0.011-0.021] unit increase	Affymetrix [up to 18485882] (imputed)	N
1255	chr5	87934706	87934707	rs10061788	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	5q14.3	LINC00461	rs10061788-?	NR	4E-14		0.018549735	[0.014-0.023] unit increase	NR [7306098]	N
1255	chr5	87936378	87936379	rs7721099	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	5q14.3		rs7721099-C	0.441549644	1E-9		1.0527418	[1.03537085-1.070404076]	Illumina [8919992] (imputed)	N
1255	chr5	87938556	87938557	rs7703782	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	5q14.3	NR	rs7703782-A	0.136112413630729	1E-15		0.017889708	[0.014-0.022] unit increase	NR [NR]	N
1255	chr5	87938556	87938557	rs7703782	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	5q14.3	NR	rs7703782-A	0.136112413630729	1E-15		0.011318244	[0.0085-0.0141] unit increase	NR [NR]	N
1255	chr5	87939653	87939654	rs10514301	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	5q14.3		rs10514301-T	NR	4E-8		0.0478	[0.031-0.065] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1255	chr5	87939653	87939654	rs10514301	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	5q14.3	MEF2C	rs10514301-?		2E-9				NR [6786993] (imputed)	N
1255	chr5	87939653	87939654	rs10514301	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	5q14.3	NR	rs10514301-T	NR	6E-11		6.552	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1255	chr5	87939653	87939654	rs10514301	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	5q14.3	LINC00461	rs10514301-T	NR	5E-12		6.905	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1255	chr5	87939653	87939654	rs10514301	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	5q14.3	LINC00461	rs10514301-T	NR	3E-12		0.030891053	[0.022-0.04] unit increase	Affymetrix [NR]	N
1255	chr5	87939653	87939654	rs10514301	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Subjective well-being (MTAG)	388,538 European ancestry individuals	NA	5q14.3	NR	rs10514301-C	0.8757	1E-10		0.0181	[0.013-0.024] unit increase	Illumina [NR] (imputed)	N
1255	chr5	87939653	87939654	rs10514301	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms (MTAG)	354,862 European ancestry individuals	NA	5q14.3	NR	rs10514301-C	0.8755	2E-13		0.0236	[0.017-0.03] unit decrease	Illumina [NR] (imputed)	N
1255	chr5	87939653	87939654	rs10514301	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms	354,862 European ancestry individuals	NA	5q14.3	NR	rs10514301-C	0.8755	6E-11		0.0235	[0.016-0.031] unit decrease	Illumina [NR] (imputed)	N
1255	chr5	87939653	87939654	rs10514301	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	5q14.3	LINC00461	rs10514301-T	0.1177	3E-12		0.03944017	[0.028-0.051] unit increase	Affymetrix [~ 2500000] (imputed)	N
1255	chr5	87940025	87940026	rs10070734	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	417,580 European ancestry individuals	NA	5q14.3		rs10070734-T	0.290469	5E-7		0.011	[0.0071-0.0149] unit decrease	NR [7250403] (imputed)	N
1255	chr5	87940025	87940026	rs10070734	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	5q14.3	TMEM161B, MEF2C	rs10070734-C	0.7089	5E-14		1.025536		Affymetrix [11880941] (imputed)	N
1255	chr5	87940025	87940026	rs10070734	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	5q14.3	NR	rs10070734-T	NR	2E-8		5.634	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1255	chr5	87942505	87942506	rs10067451	34753499	Hanscombe KB	2021-11-09	Genome Med	The genetic case for cardiorespiratory fitness as a clinical vital sign and the routine prescription of physical activity in healthcare.	Physical activity	89,683 European ancestry individuals	NA	5q14.3		rs10067451-G	0.89	3E-8		0.333	[0.22-0.45] unit increase	Affymetrix [8918919] (imputed)	N
1255	chr5	87942505	87942506	rs10067451	32589924	Bi W	2020-06-23	Am J Hum Genet	A Fast and Accurate Method for Genome-Wide Time-to-Event Data Analysis and Its Application to UK Biobank.	Essential hypertension (time to event)	76,566 British ancestry cases, 206,305 British ancestry controls	NA	5q14.3	LINC00461	rs10067451-?	NR	2E-8				NR [~ 24000000] (imputed)	N
1255	chr5	87942505	87942506	rs10067451	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Photic sneeze reflex	32,446 European ancestry cases, 67,249 European ancestry controls	NA	5q14.3	TMEM161B, MEF2C	rs10067451-?	NR	7E-12		1.1135857	[1.08-1.15]	Illumina [13729857] (imputed)	N
1255	chr5	87943344	87943345	rs13162708	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	5q14.3		rs13162708-T	NR	4E-13		0.0546	[0.04-0.069] unit increase	Affymetrix, Illumina [25845091] (imputed)	N
1255	chr5	87943619	87943620	rs13163173	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	5q14.3		rs13163173-?	0.5099	2E-10		1.0429289	[1.02952729848807-1.05650507764568]	Illumina [8919992] (imputed)	N
1255	chr5	87943619	87943620	rs13163173	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	5q14.3	NR	rs13163173-?	NR	7E-10		0.17831	[0.12-0.24] unit increase	Affymetrix [7794483] (imputed)	N
1255	chr5	87943619	87943620	rs13163173	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	5q14.3	NR	rs13163173-?	NR	5E-9	(male)	0.2082	[0.14-0.28] unit increase	Affymetrix [7794483] (imputed)	N
1255	chr5	87943709	87943710	rs13163336	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	5q14.3	NR	rs13163336-C	0.170974	1E-15		0.06723465	[0.051-0.084] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1255	chr5	87943709	87943710	rs13163336	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	5q14.3	Intergenic	rs13163336-A	0.1578	5E-16		0.0317	[0.024-0.039] unit increase	Affymetrix, Illumina [10100000] (imputed)	N
1255	chr5	87949117	87949118	rs35267052	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	5q14.3	LINC00461	rs35267052-T	NR	2E-8		0.0096885	[0.0063-0.0131] unit increase	Affymetrix [18485882] (imputed)	N
1255	chr5	87949117	87949118	rs35267052	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	5q14.3	NR	rs35267052-G	0.106574110260698	4E-12		0.0138873765	[0.01-0.0178] unit increase	NR [NR]	N
1255	chr5	87949117	87949118	rs35267052	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	5q14.3	NR	rs35267052-G	0.106574110260698	2E-12		0.014859714	[0.011-0.019] unit increase	NR [NR]	N
1255	chr5	87949117	87949118	rs35267052	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Worry too long after an embarrassing experience	367,725 European ancestry individuals	NA	5q14.3	NR	rs35267052-T	0.101497	2E-8		5.61	z score decrease	NR [10847151] (imputed)	N
1255	chr5	87949117	87949118	rs35267052	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	5q14.3	LINC00461	rs35267052-T	NR	3E-12		0.03533111	[0.025-0.045] unit decrease	Affymetrix [NR]	N
1255	chr5	87949157	87949158	rs1422191	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling miserable	376,097 European ancestry individuals	NA	5q14.3	NR	rs1422191-A	0.165914	2E-8		5.59	z score increase	NR [10847151] (imputed)	N
1256	chr5	87950542	87950543	rs16903275	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Coffee consumption	335,909 European ancestry individuals	39,924 European ancestry individuals	5q14.3	LINC00461	rs16903275-A	0.1573	7E-12		0.0138	[0.0099-0.0177] unit increase	Affymetrix [~ 7740000] (imputed)	N
1256	chr5	87950542	87950543	rs16903275	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	5q14.3		rs16903275-?	NR	6E-11				NR [~ 8900000] (imputed)	N
1256	chr5	87959022	87959023	rs1422192	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Processed meat consumption	335,576 European ancestry individuals	NA	5q14.3	intergenic	rs1422192-?	NR	1E-9		0.0204005	[0.014-0.027] unit decrease	Affymetrix [25921788] (imputed)	N
1256	chr5	87959022	87959023	rs1422192	29970889	Day FR	2018-07-03	Nat Commun	Elucidating the genetic basis of social interaction and isolation.	Regular attendance at a religious group	66,259 European ancestry cases, 386,043 European ancestry controls	NA	5q14.3	TMEM161B-AS1, LINC00461, MIR9-2, MEF2C	rs1422192-G	0.842667	4E-12		0.00694449	[0.005-0.0089] unit decrease	NR [NR] (imputed)	N
1256	chr5	87959022	87959023	rs1422192	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	5q14.3	NR	rs1422192-A	NR	1E-9		0.01917	[0.013-0.025] unit increase	Affymetrix [10847151] (imputed)	N
1256	chr5	87959022	87959023	rs1422192	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	5q14.3	TMEM161B	rs1422192-A	0.165603	7E-10		6.17	z score increase	NR [10847151] (imputed)	N
1256	chr5	87959022	87959023	rs1422192	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Irritable mood	366,726 European ancestry individuals	NA	5q14.3	NR	rs1422192-A	0.165603	4E-12		6.95	z score increase	NR [~ 10847151] (imputed)	N
1256	chr5	87962297	87962298	rs2304608	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	5q14.3	NR	rs2304608-A	0.1562	2E-18		0.029859528	[0.023-0.037] unit increase	Affymetrix [10549349] (imputed)	N
1256	chr5	87962297	87962298	rs2304608	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Cigarettes smoked per day (MTAG)	up to 403,928 European ancestry individuals	NA	5q14.3	NR	rs2304608-A	0.154	5E-8		0.0164578	[0.011-0.022] unit increase	NR [9732723] (imputed)	N
1256	chr5	87963599	87963600	rs1501673	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	5q14.3	NA	rs1501673-A	0.1355	3E-31		0.0289	[0.024-0.034] unit increase	NR [~ 27400000] (imputed)	N
1256	chr5	87963599	87963600	rs1501673	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	5q14.3	NR	rs1501673-A	NR	3E-14		7.579	z score increase	Affymetrix [10847151] (imputed)	N
1256	chr5	87965020	87965021	rs6893807	33287642	Said MA	2020-12-08	J Am Heart Assoc	Associations of Observational and Genetically Determined Caffeine Intake With Coronary Artery Disease and Diabetes Mellitus.	Caffeine consumption from coffee	373,522 European ancestry individuals	NA	5q14.3	MEF2C	rs6893807-A	0.843563	1E-9		0.01916	[0.013-0.025] unit decrease	Affymetrix [19400838] (imputed)	N
1256	chr5	87965020	87965021	rs6893807	24861553	Wen W	2014-05-26	Hum Mol Genet	Meta-analysis of genome-wide association studies in East Asian-ancestry populations identifies four new loci for body mass index.	Body mass index	82,438 East Asian ancestry individuals, 4,301 South East Asian ancestry individuals	Up to 47,352 East Asian ancestry individuals	5q14.3	LINC00461	rs6893807-G	0.46	1E-6		0.024	[0.014-0.034] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1256	chr5	87968346	87968347	rs35991856	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	5q14.3		rs35991856-A	NR	1E-10		0.0156	[0.011-0.02] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
1256	chr5	87968346	87968347	rs35991856	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	5q14.3		rs35991856-A	NR	1E-12		0.0176	[0.013-0.022] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1256	chr5	87968346	87968347	rs35991856	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	5q14.3		rs35991856-A	NR	5E-34		0.0285	[0.024-0.033] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1256	chr5	87968346	87968347	rs35991856	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Neuroticism (MTAG)	168,105 European ancestry individuals	NA	5q14.3	NR	rs35991856-A	0.1328	8E-11		0.0266	[0.019-0.035] unit increase	Illumina [NR] (imputed)	N
1256	chr5	87968863	87968864	rs6882046	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	5q14.3		rs6882046-G	0.29	2E-23		9.99	z score increase	Affymetrix [9061022] (imputed)	N
1256	chr5	87968863	87968864	rs6882046	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	5q14.3		rs6882046-A	0.6866	3E-14		69.48457	z score increase	NR [6814003]	N
1256	chr5	87968863	87968864	rs6882046	33563987	Tyrrell J	2021-02-09	Nat Commun	Genetic predictors of participation in optional components of UK Biobank.	Participation in an health questionnaire (not invited vs invited)	336,633 European ancestry cases, 114,464 European ancestry controls	NA	5q14.3	NR	rs6882046-A	0.734308	2E-10		1.007	[1.005, 1.009]	Affymetrix [39302896] (imputed)	N
1256	chr5	87968863	87968864	rs6882046	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on self-rated math ability (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	5q14.3		rs6882046-?	NR	4E-9				NR [NR]	N
1256	chr5	87968863	87968864	rs6882046	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on highest math class (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	5q14.3		rs6882046-?	NR	3E-9				NR [NR]	N
1256	chr5	87968863	87968864	rs6882046	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on educational attainment (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	5q14.3		rs6882046-?	NR	3E-11				NR [NR]	N
1256	chr5	87968863	87968864	rs6882046	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on cognitive performance (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	5q14.3		rs6882046-?	NR	4E-9				NR [NR]	N
1256	chr5	87968863	87968864	rs6882046	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on average household income before tax (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	5q14.3		rs6882046-?	NR	4E-10				NR [NR]	N
1256	chr5	87968863	87968864	rs6882046	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on Townsend deprivation index (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	5q14.3		rs6882046-?	NR	2E-8				NR [NR]	N
1256	chr5	87968863	87968864	rs6882046	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	5q14.3	LINC00461	rs6882046-G	0.2621	7E-10		0.013953905	[0.0095-0.0184] unit increase	Affymetrix [up to 18485882] (imputed)	N
1256	chr5	87968863	87968864	rs6882046	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	5q14.3	LINC00461	rs6882046-A	NR	3E-9		0.010492	[0.007-0.0139] unit increase	Affymetrix [18485882] (imputed)	N
1256	chr5	87968863	87968864	rs6882046	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Sunburns	approximately 344,000 European ancestry individuals	NA	5q14.3		rs6882046-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1256	chr5	87968863	87968864	rs6882046	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	5q14.3	NR	rs6882046-A	NR	4E-14		7.559	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1256	chr5	87968863	87968864	rs6882046	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	5q14.3	NR	rs6882046-A	NR	6E-13		7.192	z score decrease	Affymetrix [10847151] (imputed)	N
1256	chr5	87968863	87968864	rs6882046	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depression	688,809 European ancestry individuals	NA	5q14.3	NR	rs6882046-A	NR	1E-8		5.663	z score decrease	Affymetrix [10847151] (imputed)	N
1256	chr5	87968863	87968864	rs6882046	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	5q14.3	LINC00461	rs6882046-A	NR	4E-11		6.618	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1256	chr5	87968863	87968864	rs6882046	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	5q14.3	LINC00461	rs6882046-A	NR	3E-16		0.026676467	[0.02-0.033] unit decrease	Affymetrix [NR]	N
1256	chr5	87968863	87968864	rs6882046	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	5q14.3	intergenic	rs6882046-A	0.7251099999999999	3E-15		7.886	z score decrease	Illumina [18485882] (imputed)	N
1256	chr5	87968863	87968864	rs6882046	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	5q14.3	NR	rs6882046-A	0.7381	8E-14		0.018889697	NR unit decrease	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
1256	chr5	87968863	87968864	rs6882046	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (college completion)	280,007 European ancestry individuals	NA	5q14.3	NR	rs6882046-?	0.259399999999999	2E-10		1.0438634	[NR]	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
1256	chr5	87968863	87968864	rs6882046	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Neuroticism	170,911 European ancestry individuals	NA	5q14.3	NR	rs6882046-A	0.708	2E-7		0.019748092	[0.012-0.027] unit decrease	Affymetrix [up to 6544775] (imputed)	N
1256	chr5	87968863	87968864	rs6882046	25201988	Rietveld CA	2014-09-08	Proc Natl Acad Sci U S A	Common genetic variants associated with cognitive performance identified using the proxy-phenotype method.	Educational attainment	106,736 European ancestry individuals	NA	5q14.3	intergenic	rs6882046-A	0.727	9E-7		0.024	[NR] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1256	chr5	87968952	87968953	rs3814424	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	5q14.3		rs3814424-T	NR	2E-12		0.041	[0.03-0.052] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1256	chr5	87968952	87968953	rs3814424	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	5q14.3		rs3814424-?	NR	7E-18		0.0308	unit increase	NR [NR]	N
1256	chr5	87968952	87968953	rs3814424	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Depression	at least 5,919 European ancestry cases, at least 130,691 European ancestry controls	634,037 European ancestry cases, 1,308,690 European ancestry controls	5q14.3	LINC00461	rs3814424-C	0.172	2E-30		0.03432998	[0.028-0.041] unit decrease	NR [9417325] (imputed)	N
1256	chr5	87968952	87968953	rs3814424	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	5q14.3	LINC00461	rs3814424-T	0.157566	2E-9		0.049400065	[0.033-0.066] unit increase	Affymetrix [7288503] (imputed)	N
1256	chr5	87968952	87968953	rs3814424	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	5q14.3	LINC00461	rs3814424-C	NR	2E-9		0.010685	[0.0072-0.0142] unit increase	Affymetrix [18485882] (imputed)	N
1256	chr5	87968952	87968953	rs3814424	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	5q14.3	LINC00461	rs3814424-T	NR	5E-13		0.02837788	[0.021-0.036] unit increase	Affymetrix [NR]	N
1256	chr5	87968952	87968953	rs3814424	27918536	Lo MT	2016-12-05	Nat Genet	Genome-wide analyses for personality traits identify six genomic loci and show correlations with psychiatric disorders.	Conscientiousness	76,551 European ancestry individuals	46,581 European ancestry individuals	5q14.3	LINC00461	rs3814424-T	0.17	6E-7		0.289	[0.19-0.39] unit decrease (23andMe Discovery cohort)	Affymetrix, Illumina [2166809] (imputed)	N
1256	chr5	87969926	87969927	rs1846974	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	5q14.3	LINC00461	rs1846974-A	0.491	2E-15	(Japanese)	0.027	[0.021-0.033] unit increase	Illumina [6108953] (imputed)	N
1256	chr5	87969936	87969937	rs568303215	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	5q14.3	LINC00461	rs568303215-C	0.137393	1E-9		0.020177716	[0.014-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1256	chr5	87970351	87970352	rs112862634	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	5q14.3	NR	rs112862634-C	0.4876	2E-10	(East Asian)	0.4079	[0.28-0.53] unit increase	Illumina [6200000] (imputed)	N
1256	chr5	87970351	87970352	rs112862634	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	5q14.3	NR	rs112862634-C	0.4877	5E-10	(East Asian)	0.2796	[0.19-0.37] unit increase	Illumina [6200000] (imputed)	N
1256	chr5	87970351	87970352	rs112862634	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	5q14.3	NR	rs112862634-C	0.4876	9E-9	(East Asian)	0.2309	[0.15-0.31] unit increase	Illumina [6200000] (imputed)	N
1256	chr5	87974681	87974682	rs72771860	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	5q14.3		rs72771860-T	0.0686	4E-13		0.0211	[0.015-0.027] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1256	chr5	87978251	87978252	rs16903285	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	5q14.3		rs16903285-C	NR	6E-29		0.0228	[0.019-0.027] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1256	chr5	87978251	87978252	rs16903285	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	5q14.3		rs16903285-C	0.480764	6E-16		0.0219859	[0.017-0.027] unit increase	Illumina [13479924] (imputed)	N
1256	chr5	87978251	87978252	rs16903285	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	163,835 East Asian ancestry individuals	NA	5q14.3		rs16903285-C	0.480917	2E-15		0.0253669	[0.019-0.032] unit increase	Illumina [13479178] (imputed)	N
1256	chr5	87978251	87978252	rs16903285	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	5q14.3	NR	rs16903285-C	0.136218451403798	2E-16		0.011000665	[0.0084-0.0136] unit increase	NR [NR]	N
1256	chr5	87978251	87978252	rs16903285	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	5q14.3	NR	rs16903285-T	NR	1E-8		0.023	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
1256	chr5	87978251	87978252	rs16903285	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	5q14.3	LINC00461	rs16903285-C	0.14	6E-16		0.025	[0.019-0.031] unit increase	Illumina [6108953] (imputed)	N
1256	chr5	87982980	87982981	rs78792246	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	5q14.3		rs78792246-A	0.052269	8E-7		0.075921	[0.046-0.106] unit increase	Affymetrix [15580782] (imputed)	N
1256	chr5	87985294	87985295	rs26579	30531941	Doherty A	2018-12-10	Nat Commun	GWAS identifies 14 loci for device-measured physical activity and sleep duration.	Sedentary behaviour duration	91,105 European ancestry individuals	NA	5q14.3	MEF2C-AS2	rs26579-G	0.415	3E-9		0.028	[0.018-0.038] SD units increase	NR [9926106] (imputed)	N
1256	chr5	87986283	87986284	rs7733438	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	5q14.3	NA	rs7733438-T	0.8587	4E-31		0.0287	[0.024-0.034] unit decrease	NR [~ 27400000] (imputed)	N
1256	chr5	87986313	87986314	rs34483452	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	316,772 European ancestry male individuals	NA	5q14.3	NR	rs34483452-A	0.1399	8E-11		0.0186	[0.013-0.024] unit increase	NR [~ 27400000] (imputed)	N
1256	chr5	87988732	87988733	rs2304607	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms (MTAG)	955,012 individuals	NA	5q14.3	NR	rs2304607-?		1E-9				NR [520857]	N
1256	chr5	87988732	87988733	rs2304607	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms	688,809 individuals	NA	5q14.3	NR	rs2304607-?		1E-9				NR [11140414]	N
1256	chr5	87988732	87988733	rs2304607	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depression	688,809 European ancestry individuals	NA	5q14.3	NR	rs2304607-A	NR	1E-9		6.059	z score decrease	Affymetrix [10847151] (imputed)	N
1256	chr5	87988933	87988934	rs1477290	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		5q14.3	MEF2C	rs1477290-T	0.862972	4E-23		0.0199356	[0.016-0.024] unit decrease	Affymetrix [12370749]	N
1256	chr5	87988933	87988934	rs1477290	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	5q14.3	NR	rs1477290-?	NR	1E-34				Affymetrix [~ 8270000] (imputed)	N
1256	chr5	87988933	87988934	rs1477290	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	5q14.3		rs1477290-?	NR	9E-36				NR [~ 8900000] (imputed)	N
1256	chr5	87993197	87993198	rs410671	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	5q14.3		rs410671-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1256	chr5	87994701	87994702	rs27643	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	5q14.3	CTC-467M3.1	rs27643-G	0.721371	9E-16		0.020015866	[0.015-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1256	chr5	87999370	87999371	rs141729694	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	5q14.3		rs141729694-T	0.0768	1E-13		0.0195	[0.014-0.025] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1256	chr5	87999370	87999371	rs141729694	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	5q14.3	ENSG00000245864	rs141729694-T	NR	5E-14		0.044303674	[0.033-0.056] unit increase	Affymetrix [NR]	N
1256	chr5	87999370	87999371	rs141729694	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability (MTAG)	436,124 European ancestry individuals	NA	5q14.3	ENSG00000245864	rs141729694-?	NR	3E-10		6.295	z score increase	Affymetrix, Illumina, Perlegen [7333576] (imputed)	N
1256	chr5	87999370	87999371	rs141729694	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability	107,207 European ancestry individuals	NA	5q14.3	ENSG00000245864	rs141729694-?	NR	2E-6		4.789	z score increase	Affymetrix, Illumina [7357080] (imputed)	N
1256	chr5	88000598	88000599	rs71639120	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	5q14.3	NR	rs71639120-A	NR	1E-8		5.7	z score decrease	Affymetrix [10847151] (imputed)	N
1256	chr5	88000635	88000636	rs254781	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	5q14.3	CTC-467M3.1	rs254781-T	0.4206	3E-12		0.014301324	[0.01-0.018] unit decrease	Affymetrix [up to 18485882] (imputed)	N
1256	chr5	88000635	88000636	rs254781	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	5q14.3	Intergenic	rs254781-T	0.581	1E-28	(MTAG)	0.0258	[0.021-0.03] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1256	chr5	88000635	88000636	rs254781	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	5q14.3	ENSG00000245864	rs254781-T	NR	3E-21		0.029346112	[0.023-0.035] unit decrease	Affymetrix [NR]	N
1256	chr5	88001797	88001798	rs2161228	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	5q14.3	NA	rs2161228-T	0.102	4E-11		0.0192	[0.014-0.025] unit increase	NR [~ 27400000] (imputed)	N
1256	chr5	88002083	88002084	rs640177	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	5q14.3	ENSG00000245864	rs640177-A	NR	1E-11		6.777	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1256	chr5	88002652	88002653	rs447801	31926635	Coleman JRI	2019-11-01	Biol Psychiatry	The Genetics of the Mood Disorder Spectrum: Genome-wide Association Analyses of More Than 185,000 Cases and 439,000 Controls.	Bipolar disorder or major depressive disorder	164,933 European ancestry major depressive disorder cases, 20,352 European ancestry bipolar disorder cases, 439,741 European ancestry controls	NA	5q14.3	NR	rs447801-T	NR	2E-10		1.03	[1.02-1.04]	NR [NR] (imputed)	N
1256	chr5	88003402	88003403	rs454214	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depression	688,809 European ancestry individuals	NA	5q14.3	NR	rs454214-T	NR	4E-8		5.486	z score decrease	Affymetrix [10847151] (imputed)	N
1256	chr5	88003402	88003403	rs454214	27479909	Hyde CL	2016-08-01	Nat Genet	Identification of 15 genetic loci associated with risk of major depression in individuals of European descent.	Major depressive disorder	84,847 European ancestry cases, 241,266 European ancestry controls	45,773 European ancestry cases, 106,354 European ancestry controls	5q14.3	TMEM161B, MEF2C	rs454214-T	0.568054	1E-9		0.0337	[0.022-0.045] unit decrease	Illumina [1220000] (imputed)	N
1256	chr5	88005102	88005103	rs384005	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	5q14.3		rs384005-T	0.257	6E-10				Affymetrix [10369434] (imputed)	N
1256	chr5	88005102	88005103	rs384005	30116032	Erlangsen A	2018-08-16	Mol Psychiatry	Genetics of suicide attempts in individuals with and without mental disorders: a population-based genome-wide association study.	Affective disorder and suicide attempts	4,302 European ancestry cases, 13,294 European ancestry population controls	NA	5q14.3		rs384005-T	NR	4E-7		1.1630613	[1.05-1.28]	Illumina [11601089] (imputed)	N
1256	chr5	88005253	88005254	rs409645	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	5q14.3	NR	rs409645-A	0.357036565448242	2E-8		0.008203013	[0.0054-0.0111] unit decrease	NR [NR]	N
1256	chr5	88005253	88005254	rs409645	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	5q14.3	NR	rs409645-A	NR	3E-8		5.561	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1256	chr5	88005253	88005254	rs409645	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	5q14.3	ENSG00000245864	rs409645-A	NR	1E-10		0.020514514	[0.014-0.027] unit decrease	Affymetrix [NR]	N
1256	chr5	88005567	88005568	rs181900	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	5q14.3	NR	rs181900-C	NR	6E-8		1.1494253	[NR]	Illumina [7158791] (imputed)	N
1256	chr5	88006763	88006764	rs185291	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	5q14.3		rs185291-?	NR	8E-26				NR [~ 8900000] (imputed)	N
1256	chr5	88010132	88010133	rs10454905	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	5q14.3	NR	rs10454905-A	NR	2E-8		5.593	z score decrease	Affymetrix [10847151] (imputed)	N
1256	chr5	88010828	88010829	rs12655172	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	5q14.3	ENSG00000245864	rs12655172-T	NR	6E-10		6.196	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1256	chr5	88011138	88011139	rs40504	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	5q14.3	Intergenic	rs40504-C	0.568	1E-35	(MTAG)	0.0207	[0.017-0.024] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1256	chr5	88015544	88015545	rs34316	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	5q14.3	Intergenic	rs34316-A	0.4226	5E-43	(MTAG)	0.0185	[0.016-0.021] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1256	chr5	88015544	88015545	rs34316	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	5q14.3	NR	rs34316-A	NR	3E-14		7.606	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1256	chr5	88016007	88016008	rs34317	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	5q14.3	NR	rs34317-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
1256	chr5	88019473	88019474	rs42850	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Verbal-numerical reasoning	171,304 British ancestry individuals	NA	5q14.3		rs42850-?	NR	2E-13				NR [7857346] (imputed)	N
1256	chr5	88019628	88019629	rs254779	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability (MTAG)	436,124 European ancestry individuals	NA	5q14.3	MEF2C	rs254779-?	NR	1E-12		7.114	z score increase	Affymetrix, Illumina, Perlegen [7333576] (imputed)	N
1256	chr5	88019628	88019629	rs254779	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability	107,207 European ancestry individuals	NA	5q14.3	MEF2C	rs254779-?	NR	2E-6		4.809	z score increase	Affymetrix, Illumina [7357080] (imputed)	N
1256	chr5	88020833	88020834	rs13170975	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	5q14.3	NR	rs13170975-G	0.0544044079942681	4E-8		0.017991157	[0.012-0.024] unit increase	NR [NR]	N
1256	chr5	88026901	88026902	rs190438	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	5q14.3	NR	rs190438-C	0.2872	2E-13				NR [9056863] (imputed)	N
1256	chr5	88027216	88027217	rs10514302	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	5q14.3	NR	rs10514302-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1256	chr5	88029207	88029208	rs41352752	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	5q14.3	MEF2C	rs41352752-T	NR	1E-9		0.052222095	[0.035-0.069] unit decrease	Affymetrix [NR]	N
1256	chr5	88029207	88029208	rs41352752	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability	107,207 European ancestry individuals	NA	5q14.3	MEF2C	rs41352752-?	NR	2E-8		5.649	z score decrease	Affymetrix, Illumina [7357080] (imputed)	N
1256	chr5	88029207	88029208	rs41352752	28530673	Sniekers S	2017-05-22	Nat Genet	Genome-wide association meta-analysis of 78,308 individuals identifies new loci and genes influencing human intelligence.	Intelligence	up to 58,799 European ancestry adults, up to 19,509 European ancestry children	NA	5q14.3	MEF2C	rs41352752-T	0.96586	1E-8	(Adults)	5.68	z score decrease	Affymetrix, Illumina [12104294] (imputed)	N
1256	chr5	88029207	88029208	rs41352752	28530673	Sniekers S	2017-05-22	Nat Genet	Genome-wide association meta-analysis of 78,308 individuals identifies new loci and genes influencing human intelligence.	Intelligence	up to 58,799 European ancestry adults, up to 19,509 European ancestry children	NA	5q14.3	MEF2C	rs41352752-T	0.96586	1E-8		5.68	z score decrease	Affymetrix, Illumina [12104294] (imputed)	N
1256	chr5	88029626	88029627	rs412458	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (mother's age at death)	270,548 European ancestry individuals	NA	5q14.3	NR	rs412458-G	NR	8E-6		0.01484	[0.0083-0.0214] unit increase	Illumina [541493]	N
1256	chr5	88031819	88031820	rs601942	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	5q14.3	NR	rs601942-T	0.411	1E-17				NR [9056863] (imputed)	N
1256	chr5	88037208	88037209	rs17551090	29899525	Klimentidis YC	2018-06-13	Int J Obes (Lond)	Genome-wide association study of habitual physical activity in over 377,000 UK Biobank participants identifies multiple variants including CADM2 and APOE.	Accelerometer-based physical activity measurement (average acceleration)	91,084 European ancestry individuals	NA	5q14.3	MEF2C	rs17551090-T	0.89	3E-9	(model 3)	0.34	milli-gravities increase	Affymetrix [11800000] (imputed)	N
1256	chr5	88037373	88037374	rs79032298	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 4, facial height related to vertical position of gnathion)	2,187 European ancestry individuals	NA	5q14.3	NR	rs79032298-A	0.02499	1E-6		0.4646	[0.28-0.65] unit decrease	Illumina [10677593] (imputed)	N
1256	chr5	88042018	88042019	rs1422189	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	5q14.3	MEF2C	rs1422189-A	NR	6E-9		0.025843821	[0.017-0.035] unit increase	Affymetrix [NR]	N
1256	chr5	88045028	88045029	rs10514303	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	5q14.3	NA	rs10514303-A	0.0778	8E-26		0.0337	[0.027-0.04] unit increase	NR [~ 27400000] (imputed)	N
1256	chr5	88045028	88045029	rs10514303	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	5q14.3	NR	rs10514303-A	NR	5E-9		5.854	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1256	chr5	88049340	88049341	rs653444	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	5q14.3	MEF2C	rs653444-T	0.783725	2E-18		0.02374774	[0.018-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
1256	chr5	88052686	88052687	rs601499	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Lamb consumption	335,576 European ancestry individuals	NA	5q14.3	MEF2C	rs601499-?	NR	4E-8		0.0135412	[0.0087-0.0184] unit increase	Affymetrix [25921788] (imputed)	N
1256	chr5	88055480	88055481	rs665674	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	5q14.3	MEF2C	rs665674-C	0.782143	3E-18		0.023828635	[0.018-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
1256	chr5	88058162	88058163	rs606393	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	5q14.3	Intergenic	rs606393-T	0.4376	9E-21	(MTAG)	0.0169	[0.013-0.02] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1256	chr5	88058162	88058163	rs606393	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	5q14.3	Intergenic	rs606393-T	0.4378	1E-16		0.019	[0.014-0.024] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1256	chr5	88061255	88061256	rs76564347	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	5q14.3	NR	rs76564347-?	NR	2E-15				Affymetrix [~ 8270000] (imputed)	N
1256	chr5	88062222	88062223	rs186783371	30649302	Ruth KS	2019-01-14	Hum Mol Genet	Genome-wide association study of anti-Mullerian hormone levels in pre-menopausal women of late reproductive age and relationship with genetic determinants of reproductive lifespan.	Anti-Mullerian hormone levels in pre-menopausal women of late reproductive age	3,344 European ancestry women	NA	5q14.3	NR	rs186783371-T	0.011	1E-7		0.64	[0.4-0.88] unit increase	Illumina [~ 8400000] (imputed)	N
1256	chr5	88063939	88063940	rs16903340	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	5q14.3	MEF2C	rs16903340-A	NR	5E-6		1.0524	NR	Affymetrix, Illumina [8278136] (imputed)	N
1256	chr5	88065627	88065628	rs11749912	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (computer use)	408,815 European ancestry individuals	NA	5q14.3	NR	rs11749912-?		5E-10		0.0139203	[0.0095-0.0183] unit increase	Affymetrix [19400418] (imputed)	N
1257	chr5	88088203	88088204	rs10462335	33594131	Donati G	2021-02-16	Sci Rep	Evidence for specificity of polygenic contributions to attainment in English, maths and science during adolescence.	Academic attainment (science)	6,089 European ancestry adolescents	NA	5q14.3	NR	rs10462335-G	NR	8E-7		0.089	[0.054-0.124] unit decrease	Illumina [6319684] (imputed)	N
1257	chr5	88088203	88088204	rs10462335	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	5q14.3	MEF2C	rs10462335-A	0.47	2E-10		0.012875003	[0.0089-0.0168] unit decrease	Affymetrix [up to 18485882] (imputed)	N
1257	chr5	88088438	88088439	rs770189	17903302	Levy D	2007-09-19	BMC Med Genet	Framingham Heart Study 100K Project: genome-wide associations for blood pressure and arterial stiffness.	Tonometry	644 individuals	NA	5q14.3	MEF2C	rs770189-?	NR	3E-6	(CB-PWV)			Affymetrix [70897]	N
1257	chr5	88091949	88091950	rs1065861	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	5q14.3	MEF2C	rs1065861-T	NR	4E-8	(EA)	1.1380448	[1.09-1.18]	Illumina [6627481] (imputed)	N
1257	chr5	88091949	88091950	rs1065861	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	5q14.3	MEF2C	rs1065861-T	NR	3E-7		1.0928961	[1.06-1.13]	Illumina [6627481] (imputed)	N
1257	chr5	88093680	88093681	rs184474769	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	5q14.3	NR	rs184474769-?	NR	8E-9				Affymetrix [~ 8270000] (imputed)	N
1257	chr5	88094491	88094492	rs112717645	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	5q14.3	MEF2C	rs112717645-C	0.03958	8E-13		0.0400658	[0.03-0.05] unit decrease	Affymetrix [93095623] (imputed)	N
1257	chr5	88094491	88094492	rs112717645	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	5q14.3	MEF2C	rs112717645-C	0.039589	8E-13		0.04091327	[0.03-0.052] unit decrease	Affymetrix [93095623] (imputed)	N
1257	chr5	88099950	88099951	rs4521516	22139419	Gieger C	2011-11-30	Nature	New gene functions in megakaryopoiesis and platelet formation.	Mean platelet volume	13,106 European ancestry individuals, 1,652 Val Borbera (founder/genetic isolate) individuals, 593 Carlantino (founder/genetic isolate) individuals, 1,146 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,213 South Tyrolean (founder/genetic isolate) individuals, 890 Sorbian (founder/genetic isolate) individuals	Up to 16,960 European ancestry individuals, 855 Cliento (founder/genetic isolate) individuals, 1,023 Talana (founder/genetic isolate) individuals	5q14.3	MEF2C	rs4521516-G	NR	2E-9		0.008	[0.006-0.01] ln(fl) increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1257	chr5	88106257	88106258	rs700590	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	5q14.3	NR	rs700590-T	0.5924	3E-8		0.012562979	NR unit decrease	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
1257	chr5	88107336	88107337	rs62380364	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	5q14.3	MEF2C	rs62380364-A	NR	2E-16		0.025275197	[0.019-0.031] unit decrease	Affymetrix [NR]	N
1257	chr5	88110362	88110363	rs165944	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	5q14.3		rs165944-T	NR	5E-10		0.0158	[0.011-0.021] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
1257	chr5	88110362	88110363	rs165944	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	5q14.3		rs165944-T	NR	5E-13		0.0146	[0.011-0.019] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
1257	chr5	88110362	88110363	rs165944	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	5q14.3		rs165944-T	NR	9E-14		0.0155	[0.011-0.02] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
1257	chr5	88110362	88110363	rs165944	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	5q14.3	MEF2C	rs165944-T	0.764654	2E-10		0.016547384	[0.011-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1257	chr5	88110362	88110363	rs165944	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	5q14.3	MEF2C	rs165944-T	0.764663	1E-10		0.01687739	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1257	chr5	88110362	88110363	rs165944	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q14.3	NR	rs165944-T	0.791446	1E-12				Affymetrix, Illumina [24653286] (imputed)	N
1257	chr5	88110362	88110363	rs165944	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	5q14.3	NR	rs165944-T	0.764171	8E-14		0.016268	[0.012-0.021] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
1257	chr5	88110362	88110363	rs165944	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q14.3	NR	rs165944-T	0.790576	2E-13				Affymetrix, Illumina [24558453] (imputed)	N
1257	chr5	88110362	88110363	rs165944	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	5q14.3	NR	rs165944-T	0.764151	9E-14		0.016226	[0.012-0.02] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
1257	chr5	88111208	88111209	rs244760	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	5q14.3	NR	rs244760-G	0.764458	1E-10		0.014264	[0.0099-0.0186] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1257	chr5	88114475	88114476	rs160044	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	5q14.3		rs160044-T	0.693	7E-14				Affymetrix [10369434] (imputed)	N
1257	chr5	88120325	88120326	rs9986272	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	5q14.3	Intergenic	rs9986272-T	0.0706	1E-13	(MTAG)	0.0238	[0.018-0.03] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1257	chr5	88120325	88120326	rs9986272	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	5q14.3	Intergenic	rs9986272-T	0.0692	6E-14	(MTAG)	0.0194	[0.014-0.024] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1257	chr5	88122725	88122725	rs35975139	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	5q14.3	MEF2C	rs35975139-TA	0.133618	8E-10		0.020320598	[0.014-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1257	chr5	88125852	88125853	rs304151	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	5q14.3	MEF2C	rs304151-G	0.268266	5E-15		0.019502316	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1257	chr5	88138730	88138731	rs11951031	23572186	Zheng HF	2013-04-09	J Med Genet	Meta-analysis of genome-wide studies identifies MEF2C SNPs associated with bone mineral density at forearm.	Bone mineral density	5,866 European ancestry individuals	715 Mexican American individuals	5q14.3	MEF2C	rs11951031-T	0.06	9E-9		0.2	[0.12-0.28] unit decrease	Illumina [NR] (imputed)	N
1257	chr5	88140941	88140942	rs160045	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	5q14.3		rs160045-A	NR	6E-27		0.0231	[0.019-0.027] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
1257	chr5	88140941	88140942	rs160045	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q14.3	NR	rs160045-A	0.315977	1E-35				Affymetrix, Illumina [20825802] (imputed)	N
1257	chr5	88152116	88152117	rs700585	22139419	Gieger C	2011-11-30	Nature	New gene functions in megakaryopoiesis and platelet formation.	Platelet count	38,891 European ancestry individuals, 1,661 Val Borbera (founder/genetic isolate) individuals, 521 Carlantino (founder/genetic isolate) individuals, 1,198 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,213 South Tyrolean (founder/genetic isolate) individuals, 890 Sorbian (founder/genetic isolate) individuals, 4,292 Sardinian (founder/genetic isolate) individuals	Up to 16,949 European ancestry individuals, 854 Cliento (founder/genetic isolate) individuals, 1,035 Talana (founder/genetic isolate) individuals	5q14.3	MEF2C	rs700585-C	NR	1E-9		2.703	[1.84-3.57] 10^9/l increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1257	chr5	88163770	88163771	rs61104616	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	5q14.3		rs61104616-A	0.5249	2E-34		0.0172	[0.014-0.02] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1257	chr5	88163770	88163771	rs61104616	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	5q14.3	NR	rs61104616-A	NR	6E-12		6.879	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1257	chr5	88163770	88163771	rs61104616	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	5q14.3	MEF2C	rs61104616-A	NR	2E-10		6.344	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1257	chr5	88163770	88163771	rs61104616	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	5q14.3	MEF2C	rs61104616-A	NR	4E-16		0.024946295	[0.019-0.031] unit decrease	Affymetrix [NR]	N
1257	chr5	88165094	88165095	rs1671542	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	5q14.3		rs1671542-T	0.52172	3E-6		0.031818	[0.018-0.045] unit decrease	Affymetrix [15580782] (imputed)	N
1257	chr5	88167640	88167641	rs13155750	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	5q14.3	NR	rs13155750-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
1257	chr5	88167640	88167641	rs13155750	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	5q14.3	Intergenic	rs13155750-A	0.7659	4E-10	(MTAG)	0.0169	[0.012-0.022] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1257	chr5	88169566	88169567	rs304138	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms	354,862 European ancestry individuals	NA	5q14.3	NR	rs304138-G	0.4688	4E-8		0.0131	[0.0084-0.0178] unit increase	Illumina [NR] (imputed)	N
1257	chr5	88169651	88169652	rs304137	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	5q14.3		rs304137-A	0.5225	3E-14		0.016	[0.012-0.02] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
1257	chr5	88170065	88170066	rs304136	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	5q14.3		rs304136-C	0.47	1E-41		13.53	z score increase	Affymetrix [9061022] (imputed)	N
1257	chr5	88170065	88170066	rs304136	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	5q14.3	NR	rs304136-T	0.470179	2E-10		0.039964527	[0.028-0.052] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1257	chr5	88175211	88175213	rs3047819	29325848	Martin J	2017-12-02	Biol Psychiatry	A Genetic Investigation of Sex Bias in the Prevalence of Attention-Deficit/Hyperactivity Disorder.	Attention deficit hyperactivity disorder	14,154 European ancestry male cases, 17,948 European ancestry male controls	NA	5q14.3	MEF2C	rs3047819-T	NR	2E-8	(males)	0.097	[0.064-0.13] unit decrease	Illumina [7531543] (imputed)	N
1257	chr5	88175250	88175251	rs188581	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	5q14.3		rs188581-C	0.49	3E-15		7.88	z score increase	Affymetrix [9061022] (imputed)	N
1257	chr5	88180195	88180196	rs114694170	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SERPINE1	5,354 Icelandic ancestry individuals	NA	5q14.3		rs114694170-C	0.08354	4E-20		0.307603	[0.24-0.37] unit increase	Illumina [7506463] (imputed)	N
1257	chr5	88180195	88180196	rs114694170	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NOG	5,366 Icelandic ancestry individuals	NA	5q14.3		rs114694170-C	0.08354	7E-44		0.472486	[0.41-0.54] unit increase	Illumina [7506463] (imputed)	N
1257	chr5	88180195	88180196	rs114694170	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NOG	5,366 Icelandic ancestry individuals	NA	5q14.3		rs114694170-C	0.08354	6E-38		0.437871	[0.37-0.5] unit increase	Illumina [7506463] (imputed)	N
1257	chr5	88180195	88180196	rs114694170	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CTSA	5,364 Icelandic ancestry individuals	NA	5q14.3		rs114694170-C	0.08354	4E-17		0.28514	[0.22-0.35] unit decrease	Illumina [7506463] (imputed)	N
1257	chr5	88180195	88180196	rs114694170	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CCL5	5,366 Icelandic ancestry individuals	NA	5q14.3		rs114694170-C	0.08354	5E-15		0.266041	[0.2-0.33] unit decrease	Illumina [7506463] (imputed)	N
1257	chr5	88180195	88180196	rs114694170	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CCL5	5,363 Icelandic ancestry individuals	NA	5q14.3		rs114694170-C	0.08354	6E-14		0.258163	[0.19-0.33] unit decrease	Illumina [7506463] (imputed)	N
1257	chr5	88180195	88180196	rs114694170	35023831	Chong M	2022-01-13	Elife	GWAS and ExWAS of blood Mitochondrial DNA copy number identifies 71 loci and highlights a potential causal role in dementia.	Mitochondrial DNA copy number	395,718 British, Irish, Other White, South Asian, African ancestry individuals	NA	5q14.3	NR	rs114694170-C	0.0159744	3E-13		0.0331	[0.024-0.042] unit increase	Affymetrix [23037915] (imputed)	N
1257	chr5	88180195	88180196	rs114694170	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	5q14.3		rs114694170-C	NR	7E-187		0.1438	[0.13-0.15] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1257	chr5	88180195	88180196	rs114694170	34553764	Little A	2021-09-06	Hum Mol Genet	Whole genome sequence analysis of platelet traits in the NHLBI trans-omics for precision medicine initiative.	Platelet count	14,392 African American individuals, 13,985 Hispanic or Latin American individuals, 32,129 European ancestry individuals, 681 East Asian ancestry individuals, 13 individuals	10,664 individuals, 10,694 African American individuals, 7,287 Hispanic or Latin American individuals, 7,857 African ancestry individuals	5q14.3		rs114694170-C	0.035809	9E-18		8.54514	[6.59-10.5] unit increase	NR [NR]	N
1257	chr5	88180195	88180196	rs114694170	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	5q14.3		rs114694170-T	0.941	4E-49				Affymetrix [10369434] (imputed)	N
1257	chr5	88180195	88180196	rs114694170	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	5q14.3		rs114694170-T	0.941	2E-126				Affymetrix [10369434] (imputed)	N
1257	chr5	88180195	88180196	rs114694170	33385171	Hagg S	2020-12-31	Hum Genet	Deciphering the genetic and epidemiological landscape of mitochondrial DNA abundance.	Mitochondrial DNA levels	295,150 European ancestry individuals	NA	5q14.3	NR	rs114694170-C	0.05368	3E-19		0.0491234	[0.038-0.06] unit increase	Affymetrix [3505788] (imputed)	N
1257	chr5	88180195	88180196	rs114694170	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	5q14.3	MEF2C, MEF2C-AS1	rs114694170-C	0.058639	7E-15		0.037320938	[0.028-0.047] unit increase	Affymetrix [93095623] (imputed)	N
1257	chr5	88180195	88180196	rs114694170	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	5q14.3	MEF2C, MEF2C-AS1	rs114694170-C	0.059377	4E-69		0.08607483	[0.076-0.096] unit increase	Affymetrix [93095623] (imputed)	N
1257	chr5	88180195	88180196	rs114694170	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	5q14.3	MEF2C, MEF2C-AS1	rs114694170-C	0.059367	1E-116		0.111555554	[0.1-0.12] unit decrease	Affymetrix [93095623] (imputed)	N
1257	chr5	88180195	88180196	rs114694170	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	5q14.3	MEF2C, MEF2C-AS1	rs114694170-C	0.059389	2E-202		0.14612904	[0.14-0.16] unit increase	Affymetrix [93095623] (imputed)	N
1257	chr5	88180195	88180196	rs114694170	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	5q14.3	MEF2C, MEF2C-AS1	rs114694170-C	0.0593780000000001	2E-178		0.1362485	[0.13-0.15] unit decrease	Affymetrix [93095623] (imputed)	N
1257	chr5	88180195	88180196	rs114694170	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	5q14.3	MEF2C, MEF2C-AS1	rs114694170-C	0.058633	9E-16		0.0408963	[0.032-0.05] unit decrease	Affymetrix [93095623] (imputed)	N
1257	chr5	88180195	88180196	rs114694170	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	5q14.3	MEF2C, MEF2C-AS1	rs114694170-C	0.058626	1E-11		0.03266327	[0.023-0.042] unit decrease	Affymetrix [93095623] (imputed)	N
1257	chr5	88180195	88180196	rs114694170	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q14.3	NR	rs114694170-T	0.943005	1E-242				Affymetrix, Illumina [17210439] (imputed)	N
1257	chr5	88180195	88180196	rs114694170	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	5q14.3	NR	rs114694170-T	0.940908	3E-247		0.137743	[0.13-0.15] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1257	chr5	88180195	88180196	rs114694170	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	5q14.3	MEF2C, MEF2C-AS1	rs114694170-C	0.0592	3E-45		0.1110991	[0.096-0.127] unit increase	Affymetrix [~ 2500000] (imputed)	N
1257	chr5	88180195	88180196	rs114694170	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	5q14.3	MEF2C, MEF2C-AS1	rs114694170-C	0.0592	5E-56		0.1220054	[0.11-0.14] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1257	chr5	88180195	88180196	rs114694170	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	5q14.3	MEF2C, MEF2C-AS1	rs114694170-C	0.059	9E-96		0.1631569	[0.15-0.18] unit increase	Affymetrix [~ 2500000] (imputed)	N
1257	chr5	88180195	88180196	rs114694170	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	5q14.3	MEF2C, MEF2C-AS1	rs114694170-C	0.0592	9E-75		0.1424178	[0.13-0.16] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1257	chr5	88180195	88180196	rs114694170	26910538	Choi SH	2016-02-24	PLoS Genet	Six Novel Loci Associated with Circulating VEGF Levels Identified by a Meta-analysis of Genome-Wide Association Studies.	Vascular endothelial growth factor levels	9541 European ancestry individuals, 1,115 Cilento (founder/genetic isolated) individuals, 897 Ogliastran (founder/genetic isolated) individuals, 1,759 Val Borbera (founder/genetic isolated) individuals	2,141 European ancestry individuals, 659 Sorbian (founder/genetic isolated) individuals	5q14.3	MEF2C	rs114694170-T	0.96	1E-11		0.15	[0.1-0.2] unit decrease	Affymetrix, Illumina [6705861] (imputed)	N
1257	chr5	88181108	88181109	rs3850651	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	5q14.3		rs3850651-T	0.5653	2E-11		56.06904	z score increase	NR [6814003]	N
1257	chr5	88181108	88181109	rs3850651	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	5q14.3		rs3850651-?	NR	1E-10				NR [9705931] (imputed)	N
1257	chr5	88181108	88181109	rs3850651	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	5q14.3	MEF2C-AS1	rs3850651-T	NR	1E-9		0.018435294	[0.012-0.024] unit decrease	Affymetrix [NR]	N
1257	chr5	88182025	88182026	rs34875688	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	5q14.3		rs34875688-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1257	chr5	88183650	88183651	rs17560407	23400010	Del-Aguila JL	2013-02-12	Pharmacogenomics J	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NA	5q14.3	MEF2C	rs17560407-G	0.27	5E-7	(EA-triglyceride response)	23.23	[14.14-32.32] mg/dL decrease	Affymetrix, Illumina [> 2000000] (imputed)	N
1257	chr5	88188237	88188238	rs7730262	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (90 or 130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	5q14.3	AL050132	rs7730262-?	NR	4E-6		0.121	[0.041-0.201] unit decrease	Illumina [at least 13000000] (imputed)	N
1257	chr5	88190603	88190604	rs10066711	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	5q14.3	Intergenic	rs10066711-A	0.4945	2E-13		0.0143	[0.011-0.018] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1257	chr5	88191634	88191635	rs2067663	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	5q14.3		rs2067663-T	NR	8E-35		0.0261	[0.022-0.03] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
1257	chr5	88191634	88191635	rs2067663	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	5q14.3		rs2067663-T	NR	7E-27		0.0264	[0.021-0.031] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
1257	chr5	88191634	88191635	rs2067663	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	5q14.3	MEF2C, MEF2C-AS1	rs2067663-T	0.220224	7E-18		0.023648242	[0.018-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
1257	chr5	88191634	88191635	rs2067663	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	5q14.3	MEF2C, MEF2C-AS1	rs2067663-T	0.22028	2E-22		0.0309044	[0.026-0.036] unit increase	Affymetrix [93095623] (imputed)	N
1257	chr5	88191634	88191635	rs2067663	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	5q14.3	MEF2C, MEF2C-AS1	rs2067663-T	0.220288	6E-22		0.02613149	[0.021-0.031] unit increase	Affymetrix [93095623] (imputed)	N
1257	chr5	88191634	88191635	rs2067663	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q14.3	NR	rs2067663-T	0.212206	3E-45				Affymetrix, Illumina [24332387] (imputed)	N
1257	chr5	88191634	88191635	rs2067663	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	5q14.3	NR	rs2067663-T	0.220144	6E-40		0.029571	[0.025-0.034] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1257	chr5	88191634	88191635	rs2067663	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q14.3	NR	rs2067663-T	0.21449	7E-42				Affymetrix, Illumina [24246363] (imputed)	N
1257	chr5	88191634	88191635	rs2067663	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	5q14.3	NR	rs2067663-T	0.220189	4E-43		0.030224	[0.026-0.035] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
1257	chr5	88191634	88191635	rs2067663	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	5q14.3	NR	rs2067663-T	0.219911	3E-37		0.029692	[0.025-0.034] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
1257	chr5	88191634	88191635	rs2067663	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	5q14.3		rs2067663-?	NR	2E-36				NR [~ 8900000] (imputed)	N
1257	chr5	88191634	88191635	rs2067663	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	5q14.3		rs2067663-?	NR	8E-34				NR [~ 8900000] (imputed)	N
1257	chr5	88191634	88191635	rs2067663	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	5q14.3	MEF2C-AS1, MEF2C	rs2067663-T	0.2213	6E-14		0.03227871	[0.024-0.041] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1257	chr5	88191634	88191635	rs2067663	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	5q14.3	MEF2C-AS1, MEF2C	rs2067663-T	0.2214	8E-17		0.0354705	[0.027-0.044] unit increase	Affymetrix [~ 2500000] (imputed)	N
1257	chr5	88191634	88191635	rs2067663	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	5q14.3	MEF2C-AS1, MEF2C	rs2067663-T	0.2213	7E-16		0.03452001	[0.026-0.043] unit increase	Affymetrix [~ 2500000] (imputed)	N
1257	chr5	88194949	88194950	rs770463	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	5q14.3	NR	rs770463-T	NR	3E-8		5.543	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1257	chr5	88194949	88194950	rs770463	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	5q14.3	MEF2C-AS1	rs770463-T	NR	2E-8		5.662	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1257	chr5	88198556	88198557	rs10037690	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	153,512 East Asian ancestry individuals	NA	5q14.3		rs10037690-A	0.17713	4E-8		0.0226503	[0.015-0.031] unit decrease	Illumina [13479135] (imputed)	N
1257	chr5	88204711	88204712	rs79864120	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	5q14.3	MEF2C	rs79864120-G	0.7648	1E-17		1.036162		Affymetrix [11880941] (imputed)	N
1257	chr5	88204711	88204712	rs79864120	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	5q14.3	MEF2C	rs79864120-A	0.2352	1E-17		0.0170852	[0.013-0.021] unit decrease	Affymetrix [11880941] (imputed)	N
1257	chr5	88204852	88204853	rs28669119	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	5q14.3	MEF2C	rs28669119-?		2E-9				NR [6786993] (imputed)	N
1257	chr5	88204852	88204853	rs28669119	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	5q14.3	NR	rs28669119-G	NR	4E-6		1.0752687	[NR]	Illumina [7158791] (imputed)	N
1257	chr5	88209644	88209645	rs34208226	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	5q14.3	MEF2C-AS1	rs34208226-T	0.02934	7E-17		0.05642252	[0.043-0.07] unit increase	Affymetrix [93095623] (imputed)	N
1258	chr5	88215593	88215594	rs304132	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Major depressive disorder vs ADHD (ordinary least squares (OLS))	170,756 MDD cases, 19,099 ADHD cases	NA	5q14.3		rs304132-?	NR	2E-9		0.0137	NR unit decrease	NR [5568121] (imputed)	N
1258	chr5	88215593	88215594	rs304132	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Attention deficit hyperactivity disorder	55,374 individuals	NA	5q14.3	NR	rs304132-?		4E-8				NR [8028859]	N
1258	chr5	88215593	88215594	rs304132	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	5q14.3	NR	rs304132-A	NR	9E-9		5.741	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1258	chr5	88219963	88219964	rs10037047	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	5q14.3	NR	rs10037047-G	NR	2E-14		0.0248	[0.019-0.031] unit decrease	Affymetrix [9000000] (imputed)	N
1258	chr5	88220439	88220441	rs200572016	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Platelet count	27,236 European ancestry individuals	NA	5q14.3		rs200572016-T	0.978	2E-11		0.2447	[0.17-0.32] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1258	chr5	88220439	88220441	rs200572016	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Platelet count	8,850 African American individuals, 18,949 Hispanic/Latino individuals, 541 Asian ancestry individuals, 603 Native American ancestry individuals, 385 individuals	NA	5q14.3	CTC-454M9.1	rs200572016-?	NR	6E-11	(Hispanic/Latino)	15.24106	[10.67-19.81] unit decrease	Illumina [30743395] (imputed)	N
1258	chr5	88220439	88220441	rs200572016	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Platelet count	8,850 African American individuals, 18,949 Hispanic/Latino individuals, 541 Asian ancestry individuals, 603 Native American ancestry individuals, 385 individuals	NA	5q14.3	CTC-454M9.1	rs200572016-?	NR	1E-11		15.567	[11.06-20.07] unit decrease	Illumina [30743395] (imputed)	N
1258	chr5	88223419	88223420	rs190982	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	5q14.3	MEF2C-AS1	rs190982-G	0.398801	2E-10		0.014687869	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
1258	chr5	88223419	88223420	rs190982	31473137	Moreno-Grau S	2019-08-13	Alzheimers Dement	Genome-wide association analysis of dementia and its clinical endophenotypes reveal novel loci associated with Alzheimer's disease and three causality networks: The GR@ACE project.	Alzheimer's disease	4,120 Spanish ancestry cases, 17,008 cases, 3,289 Spanish ancestry controls, 37,154 controls	1,943 Spanish ancestry cases, 8,572 cases, 3,016 Spanish ancestry controls, 11,312 controls	5q14.3	MEF2C	rs190982-?	NR	4E-6		1.0752687	[1.11-1.04]	Affymetrix [up to 7055881] (imputed)	N
1258	chr5	88223419	88223420	rs190982	24162737	Lambert JC	2013-10-27	Nat Genet	Meta-analysis of 74,046 individuals identifies 11 new susceptibility loci for Alzheimer's disease.	Alzheimer's disease (late onset)	17,008 European ancestry cases, 37,154 European ancestry controls	8,572 European ancestry cases, 11,312 European ancestry controls	5q14.3	MEF2C	rs190982-A	0.592	3E-8		1.0753	[1.05-1.11]	Illumina [7055881] (imputed)	N
1258	chr5	88273652	88273653	rs6864888	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	5q14.3		rs6864888-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1258	chr5	88273652	88273653	rs6864888	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	5q14.3	Intergenic	rs6864888-T	0.3783	2E-10	(MTAG)	0.0086	[0.0061-0.0111] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1258	chr5	88275334	88275334	rs34957094	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	5q14.3	MEF2C-AS1	rs34957094-G	0.6163	1E-7		0.0345	[0.022-0.047] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1258	chr5	88288340	88288341	rs7728694	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	5q14.3	NR	rs7728694-T	0.461	1E-17		0.0503	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
1258	chr5	88290766	88290767	rs4916737	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	5q14.3	Intergenic	rs4916737-T	0.378	2E-13	(MTAG)	0.0125	[0.0092-0.0158] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1258	chr5	88293569	88293569	rs10635713	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	5q14.3	MEF2C-AS1	rs10635713-CTTT	0.333552	1E-15		0.019960562	[0.015-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1258	chr5	88297041	88297042	rs75432033	35131881	Testori A	2022-02-07	Cancer Epidemiol Biomarkers Prev	Genetic analysis in African American children supports ancestry specific neuroblastoma susceptibility.	Neuroblastoma	254 African American cases, 2,990 African American controls	NA	5q14.3		rs75432033-A	NR	8E-6		0.8278	unit increase	Illumina [NR] (imputed)	N
1258	chr5	88299266	88299267	rs59844455	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	5q14.3	Intergenic	rs59844455-G	0.6521	7E-11		0.0133	[0.0094-0.0172] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1258	chr5	88308776	88308777	rs10042828	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	5q14.3		rs10042828-A	0.8885	1E-10		0.0145	[0.01-0.019] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1258	chr5	88317008	88317008	rs553693533	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	5q14.3	MEF2C-AS1	rs553693533-GA	NR	2E-8		0.018158	[0.012-0.024] unit decrease	Affymetrix [321114] (imputed)	N
1258	chr5	88325829	88325830	rs186292051	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	5q14.3	Intergenic	rs186292051-T	NR	2E-7	(between families)	5.17	unit increase	Affymetrix [up to 15107142] (imputed)	N
1258	chr5	88327781	88327782	rs6894139	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	5q14.3	MEF2C	rs6894139-T	0.562	6E-24		0.03	[0.024-0.036] unit increase	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
1258	chr5	88327781	88327782	rs6894139	24249740	Zhang L	2013-11-17	Hum Mol Genet	Multistage genome-wide association meta-analyses identified two new loci for bone mineral density.	Bone mineral density	5,833 European ancestry females, 2,639 European ancestry males, 784 Han Chinese ancestry females, 763 Han Chinese ancestry males, 712 African American females, 409 Hispanic females	7,010 European ancestry females, 3,772 European ancestry males, 2,980 East Asian ancestry females, 2,159 East Asian ancestry males	5q14.3	MEF2C	rs6894139-?	NR	7E-18	(FNK)			Affymetrix, Illumina [5842825] (imputed)	N
1258	chr5	88332161	88332162	rs4916745	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	5q14.3		rs4916745-G	0.614	2E-20				Affymetrix [10369434] (imputed)	N
1258	chr5	88333915	88333916	rs6880872	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	5q14.3		rs6880872-T	NR	2E-65		0.0222	[0.02-0.025] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1258	chr5	88338788	88338789	rs1158464	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	5q14.3	MEF2C-AS1	rs1158464-A	0.291144	3E-16		0.020645335	[0.016-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1258	chr5	88338788	88338789	rs1158464	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	5q14.3	MEF2C-AS1	rs1158464-A	0.2892	2E-18		0.03531725	[0.027-0.043] unit increase	Affymetrix [~ 2500000] (imputed)	N
1259	chr5	88342591	88342592	rs2217257	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	5q14.3	MEF2C-AS1, MIR3660	rs2217257-?	NR	2E-32		0.033941753	[0.028-0.04] unit decrease	Illumina [27896057] (imputed)	N
1259	chr5	88345744	88345745	rs10474290	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	5q14.3		rs10474290-T	0.566684	6E-30		0.0229821	[0.019-0.027] unit decrease	Illumina [13479295] (imputed)	N
1259	chr5	88354674	88354675	rs10037512	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	5q14.3	MEF2C-AS1	rs10037512-T	0.530097	2E-23		0.00232918	[0.0019-0.0028] unit decrease	Affymetrix [13995440] (imputed)	N
1259	chr5	88354674	88354675	rs10037512	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	5q14.3	NR	rs10037512-?	NR	3E-6		0.0290756	[0.017-0.041] unit decrease	Illumina [34656550] (imputed)	N
1259	chr5	88354674	88354675	rs10037512	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	5q14.3		rs10037512-?	NR	3E-10				NR [~ 8900000] (imputed)	N
1259	chr5	88354674	88354675	rs10037512	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density (age 45-60)	18,805 European individuals	NA	5q14.3	NR	rs10037512-T	0.5173	2E-8		0.0604	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
1259	chr5	88354674	88354675	rs10037512	27397699	Pei YF	2016-07-07	Bone	Genome-wide association meta-analyses identified 1q43 and 2q32.2 for hip Ward's triangle areal bone mineral density.	Bone mineral density (Ward's triangle area)	4,305 European ancestry individuals,1,579 Chinese Han ancestry individuals, 845 African-American individuals, 446 Hispanic individuals		5q14.3	MEF2C	rs10037512-C	NR	3E-6		0.08	[NR] unit decrease	Affymetrix, Illumina [at least 9551331] (imputed)	N
1259	chr5	88354674	88354675	rs10037512	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	5q14.3	MEF2C	rs10037512-T	0.42	3E-10		0.041	[0.029-0.053] unit increase	Affymetrix, Illumina [2704730] (imputed)	N
1259	chr5	88354674	88354675	rs10037512	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	5q14.3	MEF2C	rs10037512-T	0.56	2E-18		0.032	[NR] unit increase	Affymetrix, Illumina [2834208] (imputed)	N
1259	chr5	88355992	88355993	rs13178887	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	5q14.3	MEF2C-AS1	rs13178887-T	0.6133	3E-17		0.0163	[0.013-0.02] unit increase	Affymetrix [18391927] (imputed)	N
1259	chr5	88358278	88358279	rs7727117	29499414	Pei YF	2018-02-27	Bone	Joint study of two genome-wide association meta-analyses identified 20p12.1 and 20q13.33 for bone mineral density.	Femoral neck bone mineral density	up to 4,692 European ancestry individuals, up to 1,539 Han Chinese ancestry individuals, up to 849 African American individuals, up to 446 Hispanic individuals, 2,882 European ancestry whole-genome sequenced individuals, 3,549 European ancestry whole-exome sequenced individuals, 26,534 European ancestry non-array genotype imputed individuals	NA	5q14.3	MEF2C	rs7727117-A	0.368207	1E-21		0.0675	[0.054-0.081] unit decrease	Affymetrix, Illumina [7998108] (imputed)	N
1259	chr5	88361041	88361042	rs1283614	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	5q14.3	NR	rs1283614-T	NR	2E-9		0.0294	[0.02-0.039] unit decrease	Affymetrix [9000000] (imputed)	N
1259	chr5	88364957	88364958	rs6886306	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	5q14.3		rs6886306-T	NR	4E-19		0.0181	[0.014-0.022] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
1259	chr5	88364957	88364958	rs6886306	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	5q14.3	MEF2C, CETN3	rs6886306-T	0.47	4E-17		8.42	z-score increase	Affymetrix [4311822] (imputed)	N
1259	chr5	88376060	88376061	rs1366594	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5q14.3		rs1366594-?	NR	1E-60				NR [~ 8900000] (imputed)	N
1259	chr5	88376060	88376061	rs1366594	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	5q14.3	NR	rs1366594-C	0.472164	6E-18		0.0265234	[0.02-0.033] unit decrease	NR [19129689] (imputed)	N
1259	chr5	88376060	88376061	rs1366594	29883787	Gregson CL	2018-06-05	Bone	Genome-wide association study of extreme high bone mass: Contribution of common genetic variation to extreme BMD phenotypes and potential novel BMD-associated genes.	Bone mineral density (total hip)	232 European ancestry high BMD individuals, 1,026 European ancestry moderate high BMD individuals, 852 European ancestry low BMD individuals	NA	5q14.3	MEF2C	rs1366594-C	0.47	5E-10		0.191	[0.13-0.25] unit decrease	Illumina [6379332] (imputed)	N
1259	chr5	88376060	88376061	rs1366594	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	5q14.3	NR	rs1366594-A	0.5234	5E-16	(European)	0.0507	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
1259	chr5	88376060	88376061	rs1366594	22504420	Estrada K	2012-04-15	Nat Genet	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Femoral neck bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	5q14.3	MEF2C	rs1366594-A	0.54	4E-61		0.08	[NR] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1259	chr5	88376060	88376061	rs1366594	21533022	Duncan EL	2011-04-21	PLoS Genet	Genome-wide association study using extreme truncate selection identifies novel genes affecting bone mineral density and fracture risk.	Bone mineral density	900 European ancestry female individuals with low hip bone mineral density, 1,055 European ancestry female individuals with high hip bone mineral density	20,898 European ancestry female individuals	5q14.3	MEF2C	rs1366594-C	NR	8E-10	(femoral neck)	0.14	[NR] unit increase	Illumina [2543887] (imputed)	N
1259	chr5	88376060	88376061	rs1366594	21533022	Duncan EL	2011-04-21	PLoS Genet	Genome-wide association study using extreme truncate selection identifies novel genes affecting bone mineral density and fracture risk.	Bone mineral density	900 European ancestry female individuals with low hip bone mineral density, 1,055 European ancestry female individuals with high hip bone mineral density	20,898 European ancestry female individuals	5q14.3	MEF2C	rs1366594-C	NR	1E-7	(total hip)	0.35	[NR] unit increase	Illumina [2543887] (imputed)	N
1259	chr5	88376060	88376061	rs1366594	19801982	Rivadeneira F	2009-10-04	Nat Genet	Twenty bone-mineral-density loci identified by large-scale meta-analysis of genome-wide association studies.	Bone mineral density (hip)	19,195 European ancestry individuals	NA	5q14.3	MEF2C	rs1366594-C	0.45	1E-13		0.09	[0.07-0.11] s.d. decrease	Affymetrix, Illumina [2543686] (imputed)	N
1259	chr5	88391506	88391507	rs7725337	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	5q14.3	NR	rs7725337-T	0.6088	3E-15		0.0457	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
1259	chr5	88393942	88393943	rs36088869	32239398	Liu L	2020-04-01	Hum Genet	Two novel pleiotropic loci associated with osteoporosis and abdominal obesity.	Femoral neck bone mineral density and trunk fat mass adjusted by trunk lean mass	10,208 European ancestry individuals, 445 Hispanic individuals, 843 African ancestry individuals, 1,539 East Asian individuals	NA	5q14.3	MEF2C	rs36088869-?	NR	4E-8				Affymetrix, Illumina [12061510] (imputed)	N
1259	chr5	88393942	88393943	rs36088869	32239398	Liu L	2020-04-01	Hum Genet	Two novel pleiotropic loci associated with osteoporosis and abdominal obesity.	Femoral neck bone mineral density	10,208 European ancestry individuals, 445 Hispanic individuals, 843 African ancestry individuals, 1,539 East Asian individuals	NA	5q14.3	MEF2C	rs36088869-?	NR	3E-8		0.08	NR unit increase	Affymetrix, Illumina [12061510] (imputed)	N
1259	chr5	88411213	88411214	rs7728690	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	5q14.3	NR	rs7728690-?	NR	2E-11				Affymetrix [~ 8270000] (imputed)	N
1259	chr5	88427336	88427337	rs76994193	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	5q14.3	MEF2C-AS1	rs76994193-A		4E-8		1.09	[1.06-1.12]	Affymetrix, Illumina [NR]	N
1259	chr5	88470329	88470330	rs17499351	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	5q14.3	Intergenic	rs17499351-T	0.9466	6E-12	(MTAG)	0.0274	[0.02-0.035] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1260	chr5	88474864	88474865	rs141568462	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	5q14.3	Intergenic	rs141568462-T	NR	2E-7	(between families)	5.183	unit decrease	Affymetrix [up to 15107142] (imputed)	N
1260	chr5	88475399	88475400	rs13164740	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	5q14.3	MEF2C-AS1	rs13164740-G	0.00985499999999995	5E-10		0.072871745	[0.05-0.096] unit decrease	Affymetrix [93095623] (imputed)	N
1260	chr5	88484319	88484320	rs34367533	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	5q14.3		rs34367533-?	NR	5E-10				NR [~ 8900000] (imputed)	N
1260	chr5	88534430	88534431	rs141303173	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	5q14.3	MEF2C-AS1	rs141303173-?	NR	4E-10		1.749	[1.19-2.31] unit decrease	Affymetrix [11100000] (imputed)	N
1260	chr5	88538942	88538943	rs10037415	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	5q14.3	MEF2C-AS1	rs10037415-A	NR	2E-8		0.0201967	[0.013-0.027] unit decrease	Affymetrix [321114] (imputed)	N
1260	chr5	88546877	88546878	rs72773891	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	5q14.3	NR	rs72773891-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
1260	chr5	88588301	88588302	rs4916749	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	5q14.3	MEF2C-AS1	rs4916749-C	NR	1E-8		0.0181244	[0.012-0.024] unit increase	Affymetrix [321114] (imputed)	N
1260	chr5	88601551	88601552	rs73772144	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	5q14.3		rs73772144-?	NR	3E-13				NR [~ 8900000] (imputed)	N
1261	chr5	88605628	88605629	rs10054413	26420894	Wuttke M	2015-09-28	Nephrol Dial Transplant	Genetic loci associated with renal function measures and chronic kidney disease in children: the Pediatric Investigation for Genetic Factors Linked with Renal Progression Consortium.	Glomerular filtration rate in chronic kidney disease	up to 744 Central European ancestry child cases, up to 397 Turkish ancestry child cases	NA	5q14.3	MEF2C	rs10054413-G	0.14	7E-6		0.1	[0.061-0.139] unit decrease	Illumina [~ 8300000] (imputed)	N
1261	chr5	88605628	88605629	rs10054413	26420894	Wuttke M	2015-09-28	Nephrol Dial Transplant	Genetic loci associated with renal function measures and chronic kidney disease in children: the Pediatric Investigation for Genetic Factors Linked with Renal Progression Consortium.	Glomerular filtration rate in chronic kidney disease	up to 744 Central European ancestry child cases, up to 397 Turkish ancestry child cases	NA	5q14.3	MEF2C	rs10054413-G	0.14	5E-6	(EA)	0.12	[0.061-0.179] unit decrease	Illumina [~ 8300000] (imputed)	N
1261	chr5	88617914	88617915	rs71629710	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	5q14.3	MEF2C-AS1	rs71629710-C	0.024474	1E-14		0.05642795	[0.042-0.071] unit increase	Affymetrix [93095623] (imputed)	N
1261	chr5	88633783	88633784	rs9293513	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	5q14.3	Intergenic	rs9293513-A	NR	5E-7	(between families)	5.035	unit increase	Affymetrix [up to 15107142] (imputed)	N
1261	chr5	88688362	88688363	rs17508332	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	5q14.3	Intergenic	rs17508332-C	0.9445	6E-9		0.0247	[0.016-0.033] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1261	chr5	88696667	88696668	rs247561	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	5q14.3		rs247561-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1261	chr5	88718038	88718039	rs247556	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	5q14.3		rs247556-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1261	chr5	88723638	88723640	rs140974913	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	5q14.3	NR	rs140974913-T	NR	2E-9		0.0155	[0.01-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
1261	chr5	88735336	88735338	rs3087054	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	5q14.3	intergenic	rs3087054-TTG	0.344825	3E-9	(females)	0.01605	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1261	chr5	88735336	88735338	rs3087054	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	5q14.3	intergenic	rs3087054-TTG	0.344825	1E-6		0.01047	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1261	chr5	88735336	88735338	rs3087054	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	5q14.3	intergenic	rs3087054-TTG	0.344825	1E-8	(females)	0.0138	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1262	chr5	88740322	88740323	rs2365376	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	5q14.3		rs2365376-A	0.3503	4E-10		0.0092	[0.0063-0.0121] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1262	chr5	88741076	88741077	rs2011071	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	5q14.3	NA	rs2011071-G		3E-13		0.0135715	[0.0099-0.0172] unit decrease	Illumina [13288253] (imputed)	N
1262	chr5	88743961	88743962	rs62378245	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	5q14.3	MEF2C-AS1	rs62378245-?	NR	7E-9		0.014030106	[0.0093-0.0188] unit increase	NR [7306098]	N
1262	chr5	88743961	88743962	rs62378245	31268507	Periyasamy S	2019-07-03	JAMA Psychiatry	Association of Schizophrenia Risk With Disordered Niacin Metabolism in an Indian Genome-wide Association Study.	Schizophrenia	816 Indian ancestry cases, 900 Indian ancestry controls, 505 Indian ancestry cases and 871 Indian ancestry controls from 405 families, up to 36,989 European and unknown ancestry cases, up to 113,075 European and unknown ancestry controls	NA	5q14.3	NR	rs62378245-?	NR	1E-8				Illumina [up to 5582932] (imputed)	N
1262	chr5	88743961	88743962	rs62378245	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	5q14.3	intergenic	rs62378245-?		2E-9		1.0752687	[1.05-1.1]	Affymetrix, Illumina [NR]	N
1262	chr5	88743961	88743962	rs62378245	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	5q14.3	NR	rs62378245-C	NR	1E-8		1.0752687	[NR]	Illumina [7158791] (imputed)	N
1262	chr5	88744405	88744406	rs10065531	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	5q14.3	MEF2C-AS1	rs10065531-T	NR	4E-9		0.0189834	[0.013-0.025] unit decrease	Affymetrix [321114] (imputed)	N
1262	chr5	88744405	88744406	rs10065531	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	5q14.3	NR	rs10065531-?	NR	1E-12				Affymetrix [~ 8270000] (imputed)	N
1262	chr5	88746330	88746331	rs16867576	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	65,967 individuals	NA	5q14.3	NR	rs16867576-?		2E-9				NR [8377093]	N
1262	chr5	88746330	88746331	rs16867576	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	5q14.3	MEF2C	rs16867576-A	NR	2E-8	(EA)	1.101	[1.07-1.13]	Illumina [6627481] (imputed)	N
1262	chr5	88746330	88746331	rs16867576	29483656	Pardinas AF	2018-02-26	Nat Genet	Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.	Schizophrenia	40,675 European ancestry cases, 64,643 European ancestry controls	1,651 European ancestry cases, 4,111 cases, 142,717 European ancestry controls, 11,507 controls	5q14.3	AL050132	rs16867576-?	NR	2E-11		1.106	[1.08-1.14]	Illumina [8000000] (imputed)	N
1262	chr5	88746330	88746331	rs16867576	25056061	Ripke S	2014-07-22	Nature	Biological insights from 108 schizophrenia-associated genetic loci.	Schizophrenia	32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	1,513 European ancestry cases, 66,236 European ancestry controls	5q14.3	MEF2C	rs16867576-A	0.883	5E-9		1.101	[1.066-1.138]	Affymetrix, Illumina [9005918] (imputed)	N
1262	chr5	88746404	88746405	rs6892330	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	5q14.3	MEF2C	rs6892330-T	0.3585	3E-8	(EA)	0.0217	[0.014-0.029] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1262	chr5	88746404	88746405	rs6892330	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	5q14.3	MEF2C	rs6892330-T	0.3541	7E-11		0.0241	[0.017-0.031] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1262	chr5	88746404	88746405	rs6892330	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	5q14.3	MEF2C	rs6892330-T	0.3541	6E-6	(women)	0.0251	[0.014-0.036] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1262	chr5	88746404	88746405	rs6892330	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	5q14.3	MEF2C	rs6892330-T	0.3541	5E-6	(men)	0.0253	[0.014-0.036] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1262	chr5	88746404	88746405	rs6892330	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	5q14.3	MEF2C	rs6892330-T	0.3585	9E-8	(EA)	0.0241	[0.015-0.033] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1262	chr5	88746404	88746405	rs6892330	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	5q14.3	MEF2C	rs6892330-T	0.3563	8E-6	(EA,women)	0.0257	[0.014-0.037] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1262	chr5	88746404	88746405	rs6892330	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	5q14.3	MEF2C	rs6892330-T	0.3541	2E-9		0.0259	[0.017-0.034] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1262	chr5	88746404	88746405	rs6892330	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	5q14.3	MEF2C	rs6892330-?	0.3585	8E-8	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1262	chr5	88746404	88746405	rs6892330	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	5q14.3	MEF2C	rs6892330-?	0.3541	2E-10				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1262	chr5	88748881	88748882	rs4916751	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	5q14.3	Intergenic	rs4916751-T	0.3534	8E-11	(MTAG)	0.0112	[0.0079-0.0145] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1262	chr5	88748881	88748882	rs4916751	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	5q14.3	Intergenic	rs4916751-T	0.353	4E-11	(MTAG)	0.0091	[0.0064-0.0118] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1262	chr5	88751963	88751964	rs35700159	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	5q14.3	MEF2C-AS1	rs35700159-G	0.023334	5E-10		0.046419237	[0.032-0.061] unit increase	Affymetrix [93095623] (imputed)	N
1262	chr5	88768952	88768953	rs6891697	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	5q14.3	CTD-2232E5.2	rs6891697-T	NR	4E-8		0.0154968	[0.0099-0.021] unit increase	Affymetrix [321016] (imputed)	N
1262	chr5	88780644	88780645	rs11742119	29495422	Xu H	2018-02-26	J Pers Med	A Genome-Wide Association Study of Idiopathic Dilated Cardiomyopathy in African Americans.	Idiopathic dilated cardiomyopathy	662 African American cases, 1,138 African American controls	NA	5q14.3	MEF2C-AS1, MIR3660	rs11742119-T	0.041	5E-6		1.02	[1.04-65.16]	Affymetrix [up to 27494467] (imputed)	N
1262	chr5	88787182	88787183	rs4916753	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	5q14.3	NR	rs4916753-?	NR	1E-14				Affymetrix [NR]	N
1262	chr5	88798372	88798373	rs55814654	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	5q14.3	NR	rs55814654-?	NR	2E-16				Affymetrix [~ 8270000] (imputed)	N
1262	chr5	88798372	88798373	rs55814654	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	5q14.3		rs55814654-?	NR	7E-16				NR [~ 8900000] (imputed)	N
1262	chr5	88800330	88800331	rs7716447	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	5q14.3	NR	rs7716447-?		4E-9		0.0133844	[0.0089-0.0178] unit decrease	Affymetrix [19400418] (imputed)	N
1262	chr5	88800354	88800355	rs12187066	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		5q14.3	MEF2C	rs12187066-A	0.678103	1E-10		0.0101906	[0.0071-0.0133] unit decrease	Affymetrix [12370749]	N
1262	chr5	88827089	88827090	rs17583459	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5q14.3		rs17583459-?	NR	3E-19				NR [~ 8900000] (imputed)	N
1262	chr5	88865344	88865345	rs80177293	34311721	Alotaibi RN	2021-07-26	BMC Oral Health	Genome-Wide Association Study (GWAS) of dental caries in diverse populations.	Primary dental caries (decayed and filled teeth)	1,116 children	NA			rs80177293-?	NR	8E-10		2.91	unit decrease	Illumina [8859951] (imputed)	N
1262	chr5	88866701	88866702	rs74574939	32180562	Kulyte A	2020-01-25	Mol Metab	Genome-wide association study of adipocyte lipolysis in the GENetics of adipocyte lipolysis (GENiAL) cohort.	Stimulated adipocyte lipolysis	874 European ancestry individuals	NA	5q14.3	NR	rs74574939-T	0.987368	4E-6		0.267	[0.16-0.38] unit decrease	NR [9260588] (imputed)	N
1263	chr5	88873831	88873832	rs10805858	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	5q14.3	NR	rs10805858-T	0.335286	2E-11	(Conditioned on chr5:87685500)	0.018124113	[0.013-0.023] unit increase	NR [~ 10000000] (imputed)	N
1263	chr5	88875570	88875571	rs9293518	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	5q14.3	NR	rs9293518-?	NR	4E-9				Affymetrix [~ 8270000] (imputed)	N
1263	chr5	88885695	88885696	rs13182456	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota (alpha diversity)	858 Metropolitan French ancestry individuals	NA	5q14.3	NR	rs13182456-?	NR	5E-6	(ACE metric)	0.797742	[0.46-1.14] unit increase	Illumina [5293637] (imputed)	N
1263	chr5	88885695	88885696	rs13182456	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota (alpha diversity)	858 Metropolitan French ancestry individuals	NA	5q14.3	NR	rs13182456-?	NR	1E-6	(Chao1 richness estimate)	0.513954	[0.31-0.72] unit increase	Illumina [5293637] (imputed)	N
1263	chr5	88886036	88886037	rs67709364	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	5q14.3	NR	rs67709364-A	0.32	6E-11		0.00764529	[0.0054-0.0099] unit increase	NR [9732723] (imputed)	N
1263	chr5	88890613	88890614	rs11952737	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	5q14.3	NR	rs11952737-?	NR	9E-6		4.444	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1263	chr5	88902963	88902964	rs7712641	26701879	Wang Z	2015-12-23	Gut	Identification of new susceptibility loci for gastric non-cardia adenocarcinoma: pooled results from two Chinese genome-wide association studies.	Non-cardia gastric cancer	2,031 Han Chinese ancestry cases, 4,970 Han Chinese ancestry controls	3,564 Han Chinese ancestry cases, 4,637 Han Chinese ancestry controls	5q14.3	lnc-POLR3G-4	rs7712641-C	0.54	1E-11		1.1904762	[1.14-1.25]	Affymetrix, Illumina [6223896] (imputed)	N
1263	chr5	88906679	88906680	rs10942555	34241534	Lu Y	2021-07-09	Circ Genom Precis Med	Multiethnic Genome-wide Association Study of Subclinical Atherosclerosis in Individuals with Type 2 Diabetes.	Carotid artery intima-media thickness in type 2 diabetes	3,608 European ancestry individuals, 838 African American individuals	NA	5q14.3		rs10942555-T	0.18	7E-7		0.03	[0.01-0.05] unit increase	Affymetrix, Illumina [19600000] (imputed)	N
1263	chr5	88980639	88980640	rs2365763	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	5q14.3	LINC02161	rs2365763-?	NR	5E-10	(S_HDL_CE)	0.05561573	NR unit decrease	Illumina [609262]	N
1264	chr5	89014049	89014050	rs151305263	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	5q14.3	MEF2C, CETN3	rs151305263-G	NR	7E-6		1.21309	[0.68-1.74] unit decrease	Illumina [at least 950000] (imputed)	N
1264	chr5	89021577	89021578	rs10514310	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	5q14.3	intergenic	rs10514310-G	0.208	7E-6	(Waist:height)	0.03	[NR] unit increase	Illumina [899892]	N
1264	chr5	89023792	89023793	rs17585072	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	5q14.3		rs17585072-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1264	chr5	89023792	89023793	rs17585072	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	5q14.3		rs17585072-?	NR	3E-10		0.0356646	[0.025-0.047] unit decrease	Affymetrix [20259828] (imputed)	N
1264	chr5	89051856	89051857	rs6864869	24684796	Cox AJ	2014-03-11	Neurobiol Aging	Heritability and genetic association analysis of cognition in the Diabetes Heart Study.	Cognitive function	423 type 2 diabetes cases and 127 unaffected siblings from 257 families	NA	5q14.3	intergenic	rs6864869-C	0.115	3E-6	(3MSE)	2.7468	[1.60-3.90] unit decrease	Affymetrix [> 371951] (imputed)	N
1264	chr5	89069874	89069875	rs10474306	31170924	Kong S	2019-06-06	BMC Med Genet	Identification of female-specific genetic variants for metabolic syndrome and its component traits to improve the prediction of metabolic syndrome in females.	Systolic blood pressure	4,659 Korean ancestry females	5,273 Korean ancestry females	5q14.3	LOC105379076	rs10474306-G	0.14376666666666668	9E-6		1.6966	[0.95-2.45] unit increase	Affymetrix [NR] (imputed)	N
1264	chr5	89109749	89109750	rs10514317	22675492	Prescott J	2012-06-04	PLoS One	Genome-wide association study of circulating estradiol, testosterone, and sex hormone-binding globulin in postmenopausal women.	Sex hormone-binding globulin levels	1,598 European ancestry female individuals	NA	5q14.3	intergenic	rs10514317-T	0.12	7E-7		0.132	[NR] unit decrease	Illumina [~ 2500000] (imputed)	N
1264	chr5	89115575	89115576	rs10046069	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	5q14.3		rs10046069-A	0.1203	4E-9		0.0127	[0.0084-0.017] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1264	chr5	89115575	89115576	rs10046069	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	5q14.3	Intergenic	rs10046069-A	0.1203	1E-9	(MTAG)	0.0122	[0.0083-0.0161] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1265	chr5	89213027	89213028	rs73770737	29503163	Yu H	2018-03-01	Lancet Psychiatry	Five novel loci associated with antipsychotic treatment response in patients with schizophrenia: a genome-wide association study.	Response to haloperidol in schizophrenia	192 Han Chinese ancestry cases	NA	5q14.3	MIR3660	rs73770737-G	NR	6E-6		13.4294	[7.78-19.08] unit increase	Illumina [6097251] (imputed)	N
1265	chr5	89216232	89216233	rs10942580	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	5q14.3	ENSG00000214942	rs10942580-T	NR	3E-8		0.022152135	[0.014-0.03] unit increase	Affymetrix [NR]	N
1265	chr5	89230642	89230643	rs16868036	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	5q14.3		rs16868036-T	0.2908	2E-9	(conditional-joint)	0.0093	[0.0062-0.0124] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1266	chr5	89286253	89286254	rs1560208	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	5q14.3	MIR3660	rs1560208-?	NR	1E-8		0.014982785	[0.0098-0.0202] unit decrease	NR [7306098]	N
1266	chr5	89309860	89309861	rs117814792	30169916	Sun Y	2018-08-31	J Eur Acad Dermatol Venereol	Investigation of the Predisposing Factor of Pemphigus and its clinical subtype through a Genome-wide association and next generation sequence analysis.	Pemphigus vulgaris	101 Chinese ancestry cases, 844 Chinese ancestry controls	at least 56 Chinese ancestry cases, up to 996 Chinese ancestry controls	5q14.3	NR	rs117814792-A	NR	2E-6		3.125		Illumina [5546030] (imputed)	N
1266	chr5	89353209	89353210	rs166820	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	5q14.3	NR	rs166820-A	NR	1E-11		6.761	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1266	chr5	89353209	89353210	rs166820	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	5q14.3	MIR3660	rs166820-A	NR	2E-8		0.022414079	[0.015-0.03] unit increase	Affymetrix [NR]	N
1266	chr5	89364933	89364934	rs818946	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	5q14.3	NR	rs818946-?	NR	2E-7		5.229	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1266	chr5	89374757	89374758	rs554096341	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	5q14.3	NA	rs554096341-T		1E-8		0.0149632	[0.0098-0.0201] unit increase	Illumina [13288253] (imputed)	N
1267	chr5	89399329	89399330	rs1698135	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q14.3	NR	rs1698135-?		2E-8	(Sagittal stratum)			NR [8955960] (imputed)	N
1267	chr5	89466181	89466182	rs6452875	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	5q14.3	NR	rs6452875-A	NR	8E-15		0.024	[0.018-0.03] unit increase	Affymetrix [9000000] (imputed)	N
1267	chr5	89484910	89484911	rs62380354	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	NA	5q14.3	RP11-61G23.1	rs62380354-A	0.8904	4E-10		0.1825	[0.13-0.24] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1268	chr5	89546108	89546109	rs12518099	19734900	Rung J	2009-09-06	Nat Genet	Genetic variant near IRS1 is associated with type 2 diabetes, insulin resistance and hyperinsulinemia.	Type 2 diabetes	679 European ancestry cases, 697 European ancestry controls	5,579 European ancestry cases, 7,096 European ancestry controls	5q14.3	LOC72901, CETN3	rs12518099-C	0.23	7E-7		1.16	[1.10-1.22]	Illumina [392365]	N
1268	chr5	89577302	89577303	rs2935488	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5q14.3	LOC153364	rs2935488-?	NR	7E-6	(inosine)	0.6390925	[0.36-0.92] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1268	chr5	89592262	89592263	rs62378014	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	5q14.3		rs62378014-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1269	chr5	89780970	89780971	rs2562519	21810746	Chantarangsu S	2011-08-01	Clin Infect Dis	Genome-wide association study identifies variations in 6p21.3 associated with nevirapine-induced rash.	Nevirapine-induced rash	72 Thai ancestry nevirapine-induced rash HIV cases, 77 Thai ancestry nevirapine-tolerant rash HIV cases	88 Thai ancestry nevirapine-induced rash HIV cases, 145 Thai ancestry nevirapine-tolerant HIV cases	5q14.3	POLR3G	rs2562519-A	0.5	5E-6				Illumina [499730]	N
1270	chr5	89847748	89847749	rs144750443	31996736	Elsheikh SSM	2020-01-29	Sci Rep	Genome-Wide Association Study of Brain Connectivity Changes for Alzheimer's Disease.	Longitudinal brain connectivity change (transitivity)	57 European ancestry individuals	NA	5q14.3	NR	rs144750443-C	NR	2E-7		5.2	z score decrease	NR [9015039] (imputed)	N
1271	chr5	89925894	89925895	rs4574581	30678657	Westphal S	2019-01-24	BMC Cardiovasc Disord	Genome-wide association study of myocardial infarction, atrial fibrillation, acute stroke, acute kidney injury and delirium after cardiac surgery - a sub-analysis of the RIPHeart-Study.	Postoperative atrial fibrillation after cardiac surgery	242 cases, 640 controls	NA	5q14.3	GPR98	rs4574581-?	NR	2E-6	(adjusted for delirium, myocardial infarction, renal failure and stroke)	1.8518518	[1.43-2.38]	Illumina [9007469] (imputed)	N
1271	chr5	89943570	89943571	rs2366777	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	5q14.3		rs2366777-G	0.33	2E-14		7.65	z score increase	Affymetrix [9061022] (imputed)	N
1271	chr5	89964297	89964298	rs11959408	34411106	Liu C	2021-08-19	PLoS Genet	Genome scans of facial features in East Africans and cross-population comparisons reveal novel associations.	Facial morphology (segment 43)	2,595 Tanzanian ancestry individuals	NA	5q14.3		rs11959408-?	NR	1E-8				Illumina [NR] (imputed)	N
1271	chr5	89975084	89975085	rs7721198	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5q14.3	LYSMD3	rs7721198-?	NR	9E-6	(PC 38:4)	0.154831	[0.087-0.223] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1271	chr5	90003130	90003131	rs6869935	34006833	Elvsashagen T	2021-05-18	Nat Commun	The genetic architecture of the human thalamus and its overlap with ten common brain disorders.	Lateral thalamic nuclei volume	30,114 white British ancestry individuals			GPR98	rs6869935-G	0.164	4E-14		0.083463	[0.062-0.105] unit increase	Affymetrix [8165723] (imputed)	N
1271	chr5	90020670	90020671	rs16869039	31790847	Hou R	2019-11-29	Bone	Genetic variants affecting bone mineral density and bone mineral content at multiple skeletal sites in Hispanic children.	Bone mineral density	1,030 Hispanic or Latin American children	NA	5q14.3	ADGRV1	rs16869039-T	0.01	7E-6	(left arm)	1.18	[0.67-1.69] g/cm2 increase	Illumina [> 1100000]	N
1271	chr5	90020670	90020671	rs16869039	31790847	Hou R	2019-11-29	Bone	Genetic variants affecting bone mineral density and bone mineral content at multiple skeletal sites in Hispanic children.	Bone mineral content	1,030 Hispanic or Latin American children	NA	5q14.3	ADGRV1	rs16869039-T	0.01	5E-6	(left arm)	1.04	[0.59-1.49] g increase	Illumina [> 1100000]	N
1271	chr5	90025841	90025842	rs2030272	31792237	Yang BZ	2019-12-02	Sci Rep	Genomewide Gene-by-Sex Interaction Scans Identify ADGRV1 for Sex Differences in Opioid Dependent African Americans.	Opioid dependence x sex interaction	2,603 African American cases, 2,341 African American controls, 2,112 European ancestry cases, 1,331 European ancestry controls	NA	5q14.3		rs2030272-?	NR	5E-8		0.1	[0.063-0.137] unit increase	Illumina [up to 8775706] (imputed)	N
1271	chr5	90026633	90026634	rs2366929	31792237	Yang BZ	2019-12-02	Sci Rep	Genomewide Gene-by-Sex Interaction Scans Identify ADGRV1 for Sex Differences in Opioid Dependent African Americans.	Opioid dependence x sex interaction	2,603 African American cases, 2,341 African American controls, 2,112 European ancestry cases, 1,331 European ancestry controls	NA	5q14.3		rs2366929-?	NR	2E-9		0.11	[0.075-0.145] unit increase	Illumina [up to 8775706] (imputed)	N
1271	chr5	90033696	90033697	rs2222243	31792237	Yang BZ	2019-12-02	Sci Rep	Genomewide Gene-by-Sex Interaction Scans Identify ADGRV1 for Sex Differences in Opioid Dependent African Americans.	Opioid dependence x sex interaction	2,603 African American cases, 2,341 African American controls, 2,112 European ancestry cases, 1,331 European ancestry controls	NA	5q14.3		rs2222243-?	NR	5E-8		0.1	[0.063-0.137] unit increase	Illumina [up to 8775706] (imputed)	N
1271	chr5	90033878	90033879	rs1988195	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	5q14.3		rs1988195-T	0.3	2E-12		7.07	z score increase	Affymetrix [9061022] (imputed)	N
1271	chr5	90033878	90033879	rs1988195	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	5q14.3	NR	rs1988195-T	0.3239	9E-13				NR [9056863] (imputed)	N
1271	chr5	90034301	90034302	rs2443067	31792237	Yang BZ	2019-12-02	Sci Rep	Genomewide Gene-by-Sex Interaction Scans Identify ADGRV1 for Sex Differences in Opioid Dependent African Americans.	Opioid dependence x sex interaction	2,603 African American cases, 2,341 African American controls, 2,112 European ancestry cases, 1,331 European ancestry controls	NA	5q14.3		rs2443067-?	NR	5E-8		0.1	[0.063-0.137] unit increase	Illumina [up to 8775706] (imputed)	N
1271	chr5	90034783	90034784	rs2443066	31792237	Yang BZ	2019-12-02	Sci Rep	Genomewide Gene-by-Sex Interaction Scans Identify ADGRV1 for Sex Differences in Opioid Dependent African Americans.	Opioid dependence x sex interaction	2,603 African American cases, 2,341 African American controls, 2,112 European ancestry cases, 1,331 European ancestry controls	NA	5q14.3		rs2443066-?	NR	4E-8		0.1	[0.063-0.137] unit increase	Illumina [up to 8775706] (imputed)	N
1271	chr5	90036979	90036980	rs2460186	31792237	Yang BZ	2019-12-02	Sci Rep	Genomewide Gene-by-Sex Interaction Scans Identify ADGRV1 for Sex Differences in Opioid Dependent African Americans.	Opioid dependence x sex interaction	2,603 African American cases, 2,341 African American controls, 2,112 European ancestry cases, 1,331 European ancestry controls	NA	5q14.3		rs2460186-?	NR	4E-8		0.1	[0.063-0.137] unit increase	Illumina [up to 8775706] (imputed)	N
1271	chr5	90038449	90038450	rs2460187	31792237	Yang BZ	2019-12-02	Sci Rep	Genomewide Gene-by-Sex Interaction Scans Identify ADGRV1 for Sex Differences in Opioid Dependent African Americans.	Opioid dependence x sex interaction	2,603 African American cases, 2,341 African American controls, 2,112 European ancestry cases, 1,331 European ancestry controls	NA	5q14.3		rs2460187-?	NR	4E-8		0.1	[0.063-0.137] unit increase	Illumina [up to 8775706] (imputed)	N
1272	chr5	90052288	90052289	rs10062026	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Snoring	359,916 European ancestry individuals	NA	5q14.3	NR	rs10062026-G	0.6409	2E-8		1.0309278	[1.02-1.04]	Affymetrix, Illumina [10862568] (imputed)	N
1272	chr5	90053055	90053056	rs2443065	31792237	Yang BZ	2019-12-02	Sci Rep	Genomewide Gene-by-Sex Interaction Scans Identify ADGRV1 for Sex Differences in Opioid Dependent African Americans.	Opioid dependence x sex interaction	2,603 African American cases, 2,341 African American controls, 2,112 European ancestry cases, 1,331 European ancestry controls	NA	5q14.3		rs2443065-?	NR	4E-8		0.1	[0.063-0.137] unit increase	Illumina [up to 8775706] (imputed)	N
1272	chr5	90053279	90053280	rs2443064	31792237	Yang BZ	2019-12-02	Sci Rep	Genomewide Gene-by-Sex Interaction Scans Identify ADGRV1 for Sex Differences in Opioid Dependent African Americans.	Opioid dependence x sex interaction	2,603 African American cases, 2,341 African American controls, 2,112 European ancestry cases, 1,331 European ancestry controls	NA	5q14.3		rs2443064-?	NR	4E-8		0.1	[0.063-0.137] unit increase	Illumina [up to 8775706] (imputed)	N
1272	chr5	90059000	90059001	rs881289	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	5q14.3		rs881289-T	0.45	1E-8		5.68	z score increase	Affymetrix [9061022] (imputed)	N
1272	chr5	90062095	90062096	rs73177427	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	5q14.3	GPR98	rs73177427-T	0.925	4E-6	(AA)	0.224	NR unit increase	Illumina [NR] (imputed)	N
1272	chr5	90068208	90068209	rs7720206	34356046	Oluwafemi OO	2021-07-01	Genes (Basel)	Genome-Wide Association Studies of Conotruncal Heart Defects with Normally Related Great Vessels in the United States.	Conotruncal heart defects with normally related great vessels in 22q.11.2 deletion syndrome	913 cases, 559 controls	NA	5q14.3		rs7720206-?	NR	1E-6				Affymetrix [3311160] (imputed)	N
1272	chr5	90077550	90077551	rs79414853	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	5q14.3	GPR98	rs79414853-T	0.924	4E-6	(AA)	0.223	NR unit increase	Illumina [NR] (imputed)	N
1272	chr5	90151588	90151589	rs2247870	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	5q14.3	GPR98	rs2247870-A	NR	6E-6	(EA)	1.0504	[1.03-1.07]	Illumina [6627481] (imputed)	N
1272	chr5	90151588	90151589	rs2247870	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	5q14.3	GPR98	rs2247870-A	NR	5E-7		1.047	[1.03-1.07]	Illumina [6627481] (imputed)	N
1272	chr5	90151588	90151589	rs2247870	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	5q14.3	ADGRV1	rs2247870-A	NR	3E-8		1.052	[1.03-1.07]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1272	chr5	90155413	90155414	rs2247419	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	5q14.3	NR	rs2247419-G	NR	6E-7		1.0526316	[NR]	Illumina [7158791] (imputed)	N
1272	chr5	90156179	90156180	rs34368137	33106475	Li QS	2020-10-26	Transl Psychiatry	Genome-wide association studies of antidepressant class response and treatment-resistant depression.	Response to norepinephrine-dopamine reuptake inhibitors (responders vs non-responders)	3,971 European ancestry responders, 3,512 European ancestry non-responders	NA	5q14.3	NR	rs34368137-T	NR	6E-6		0.8158	NR	Illumina [at least 560000] (imputed)	N
1272	chr5	90158645	90158645	rs35475471	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	5q14.3	NR	rs35475471-CAT	0.32542899999999997	1E-10		0.00835424	[0.0058-0.011] unit increase	Affymetrix [16585854] (imputed)	N
1272	chr5	90158645	90158645	rs35475471	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	5q14.3	NR	rs35475471-CAT	0.32542899999999997	2E-7		0.00781657	[0.0048-0.0108] unit increase	Affymetrix [16585866] (imputed)	N
1272	chr5	90169069	90169070	rs58729412	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	5q14.3	NR	rs58729412-C	0.281489	2E-13		0.00680865	[0.005-0.0086] unit increase	Affymetrix [16582909] (imputed)	N
1272	chr5	90169069	90169070	rs58729412	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	5q14.3	NR	rs58729412-C	0.281489	3E-11		0.00689377	[0.0048-0.0089] unit increase	Affymetrix [16582965] (imputed)	N
1273	chr5	90179723	90179724	rs6893164	24342994	Lencz T	2014-02-01	Mol Psychiatry	Molecular genetic evidence for overlap between general cognitive ability and risk for schizophrenia: a report from the Cognitive Genomics consorTium (COGENT).	General cognitive ability	4,896 European ancestry individuals	NR	5q14.3	NR	rs6893164-?	NR	4E-6		0.1854	unit decrease	Affymetrix, Illumina [up to 1078289] (imputed)	N
1273	chr5	90193467	90193468	rs13155267	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	5q14.3		rs13155267-C	NR	7E-13		0.0147	[0.011-0.019] unit decrease	Affymetrix, Illumina [20538307] (imputed)	N
1273	chr5	90205536	90205537	rs6878896	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	5q14.3		rs6878896-C	NR	5E-14		0.0139	[0.01-0.017] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
1273	chr5	90206184	90206185	rs57190680	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5q14.3		rs57190680-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1273	chr5	90207398	90207399	rs6889986	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Tyrosine levels	114,913 European ancestry individuals	NA	5q14.3		rs6889986-G	0.596683	9E-9		0.0240489	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
1273	chr5	90209823	90209824	rs10074525	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	5q14.3	GPR98	rs10074525-C	NR	1E-8		0.0170577	[0.011-0.023] unit decrease	Affymetrix [321016] (imputed)	N
1273	chr5	90209823	90209824	rs10074525	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	5q14.3	GPR98	rs10074525-G	0.13	9E-6	(Weight z-score )	0.03	[NR] SD increase	Illumina [899892]	N
1273	chr5	90211272	90211273	rs62374016	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	5q14.3	ADGRV1	rs62374016-T	0.6668	8E-9		0.0043	[0.0029-0.0057] unit increase	Affymetrix, Illumina [8176554] (imputed)	N
1273	chr5	90211983	90211984	rs36015459	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	5q14.3		rs36015459-A	NR	4E-8		0.0154	[0.0099-0.0209] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
1273	chr5	90212275	90212276	rs4916831	28927820	Sugier PE	2017-09-16	J Allergy Clin Immunol	A novel role for ciliary function in atopy: ADGRV1 and DNAH5 interactions.	Atopy	925 European ancestry cases, 735 European ancestry controls	641 French Canadian (founder/population isolate) cases, 497 French Canadian (founder/population isolate) controls, 106 cases, 340 controls	5q14.3	ADGRV1	rs4916831-G	0.56	7E-9		1.4084507	[1.27-1.59]	Illumina [501167]	N
1273	chr5	90226060	90226061	rs3105793	30837465	Wittemans LBL	2019-03-05	Nat Commun	Assessing the causal association of glycine with risk of cardio-metabolic diseases.	Glycine levels	80,003 European ancestry individuals	NA	5q14.3	ADGRV1	rs3105793-A	0.273	4E-8		0.028	[0.016-0.04] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1273	chr5	90226125	90226126	rs3105792	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	5q14.3	NR	rs3105792-T	0.32	5E-11		0.0129	[0.009-0.0168] unit decrease	NR [NR]	N
1273	chr5	90226978	90226979	rs74501188	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Small cell lung carcinoma	2,664 European ancestry cases,  21,444 European ancestry controls	NA	5q14.3	ADGRV1	rs74501188-G	0.776056638	3E-7		1.2018008	[1.12-1.29]	Illumina [10439017] (imputed)	N
1273	chr5	90229806	90229807	rs11744148	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	5q14.3		rs11744148-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1273	chr5	90255514	90255514	rs34131104	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	5q14.3		rs34131104-GAC	NR	1E-12		0.0138	[0.01-0.018] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1273	chr5	90255684	90255685	rs7704653	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycine levels	114,978 European ancestry individuals	NA	5q14.3		rs7704653-A	0.27597	4E-12		0.0305824	[0.022-0.039] unit increase	NR [11722792] (imputed)	N
1273	chr5	90255684	90255685	rs7704653	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	5q14.3		rs7704653-G	NR	3E-8		0.0122	[0.0079-0.0165] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
1273	chr5	90255684	90255685	rs7704653	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	5q14.3	NR	rs7704653-G	NR	4E-10		0.0169	[0.012-0.022] unit increase	Affymetrix [9000000] (imputed)	N
1273	chr5	90255684	90255685	rs7704653	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	5q14.3	GPR98	rs7704653-A	0.276971	4E-12		0.0156078	[0.011-0.02] unit decrease	Affymetrix [NR] (imputed)	N
1273	chr5	90255684	90255685	rs7704653	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	5q14.3	GPR98	rs7704653-?	NR	9E-9		0.017	[0.012-0.022] unit decrease	Affymetrix [5701386] (imputed)	N
1273	chr5	90262611	90262612	rs12523094	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous malignant melanoma	36,760 European ancestry cases, 375,188 European ancestry controls	NA	5q14.3	CTD-2266L18.1	rs12523094-T	0.5669	2E-12		1.0714	NR	Affymetrix, Illumina [NR] (imputed)	N
1273	chr5	90263168	90263169	rs10942621	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Nevus count or cutaneous melanoma	36,760 European ancestry cutaneous melanoma cases, 375,188 European ancestry controls, 12,930 European ancestry individuals, 52,847 individuals	NA	5q14.3	CTD-2266L18.1	rs10942621-A	0.583	2E-12				Affymetrix, Illumina [NR] (imputed)	N
1273	chr5	90263580	90263581	rs6860111	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	5q14.3	ADGRV1	rs6860111-?	NR	3E-48		1.1239743	NR	Affymetrix [9154080] (imputed)	N
1273	chr5	90263862	90263863	rs6879563	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous melanoma or hair colour	36,760 European ancestry cutaneous melanoma cases, 375,188 European ancestry controls, 352,662 European ancestry individuals	NA	5q14.3	CTD-2266L18.1	rs6879563-C	0.582769	1E-83				Affymetrix, Illumina [NR] (imputed)	N
1273	chr5	90264895	90264895	rs34615879	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	5q14.3	GPR98	rs34615879-GA	0.374589	9E-15		0.018052962	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1273	chr5	90269165	90269166	rs7704311	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	5q14.3	GPR98	rs7704311-A	0.373769	6E-12		0.015966738	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1273	chr5	90269375	90269376	rs6452920	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	5q14.3	NR	rs6452920-A	0.37603	2E-18		0.01731	[0.013-0.021] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1273	chr5	90269511	90269512	rs6452921	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q14.3	NR	rs6452921-C	0.425505	3E-19				Affymetrix, Illumina [24588908] (imputed)	N
1273	chr5	90277680	90277681	rs58142303	30898391	Lawrenson K	2019-03-19	Gynecol Oncol	Genome-wide association studies identify susceptibility loci for epithelial ovarian cancer in east Asian women.	Epithelial ovarian cancer	3,238 East Asian ancestry cases, 4,083 East Asian ancestry controls	NA	5q14.3		rs58142303-?	NR	7E-6	(serous)	1.63		Illumina [11595112] (imputed)	N
1273	chr5	90277796	90277797	rs60325490	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	5q14.3		rs60325490-?	NR	4E-56				NR [~ 8900000] (imputed)	N
1273	chr5	90279902	90279903	rs12186968	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	5q14.3	GPR98	rs12186968-T	NR	9E-10		0.0187675	[0.013-0.025] unit decrease	Affymetrix [321016] (imputed)	N
1273	chr5	90299222	90299223	rs1967256	20195266	Adkins DE	2010-03-02	Mol Psychiatry	Genomewide pharmacogenomic study of metabolic side effects to antipsychotic drugs.	Response to antipsychotic treatment	421 European ancestry, 214 African American, and 103 cases	NA	5q14.3	GPR98	rs1967256-?	0.148	3E-8	(olanzapine-hemoglobin A1c			Affymetrix [492900]	N
1274	chr5	90316675	90316676	rs34824169	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	5q14.3		rs34824169-A	NR	2E-6		2.3981	[1.43-3.37] unit increase	Illumina [NR] (imputed)	N
1274	chr5	90319893	90319894	rs56258383	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	5q14.3	GPR98	rs56258383-A	NR	4E-8		0.0169686	[0.011-0.023] unit decrease	Affymetrix [321016] (imputed)	N
1274	chr5	90342411	90342412	rs7449334	30940143	Zhu Z	2019-04-02	Respir Res	Genetic overlap of chronic obstructive pulmonary disease and cardiovascular disease-related traits: a large-scale genome-wide cross-trait analysis.	Chronic obstructive pulmonary disease or resting heart rate (pleiotropy)	12,550 European and unknown ancestry chronic obstructive pulmonary disease cases, 46,368 European and unknown ancestry controls, 458,969 European ancestry individuals	NA	5q14.3	GPR98	rs7449334-?	NR	2E-11				Affymetrix [up to 7325140] (imputed)	N
1274	chr5	90349012	90349013	rs73187156	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	5q14.3		rs73187156-T	NR	2E-8		0.0263	[0.017-0.036] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
1274	chr5	90356196	90356197	rs12186662	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Melanoma	6,777 European ancestry cases, 410,350 European ancestry controls	NA	5q14.3		rs12186662-G	0.679698	1E-8		1.1159469	NR	Affymetrix [7846216] (imputed)	N
1274	chr5	90366215	90366216	rs16869404	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Creatinine levels	110,051 European ancestry individuals	NA	5q14.3		rs16869404-T	0.898428	2E-8		0.0331014	[0.022-0.045] unit increase	NR [11722792] (imputed)	N
1274	chr5	90383460	90383461	rs59661306	30412241	Takeuchi F	2018-11-09	Hum Mol Genet	Genome-wide association study of cervical cancer suggests a role for ARRDC3 gene in human papillomavirus infection.	Cervical cancer	2,609 East Asian ancestry cases, 4,712 East Asian ancestry controls	1,461 Han Chinese ancestry cases, 3,295 Han Chinese ancestry controls	5q14.3	ADGRV1	rs59661306-G	0.15	2E-11		1.2987013	[NR]	Affymetrix, Illumina [4602429] (imputed)	N
1274	chr5	90386513	90386514	rs10068613	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q14.3	NR	rs10068613-T	0.0560557	2E-11				Affymetrix, Illumina [24558453] (imputed)	N
1274	chr5	90389882	90389883	rs6452937	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycoprotein acetyls levels	115,082 European ancestry individuals	NA	5q14.3		rs6452937-A	0.860604	3E-8		0.0328491	[0.021-0.044] unit increase	NR [11722792] (imputed)	N
1274	chr5	90391920	90391921	rs75117248	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q14.3	NR	rs75117248-C	0.0555447	1E-11				Affymetrix, Illumina [24332387] (imputed)	N
1274	chr5	90395205	90395206	rs2367279	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	5q14.3	ADGRV1	rs2367279-T	0.9047	4E-9		0.0192	[0.013-0.026] unit decrease	Affymetrix [18391927] (imputed)	N
1274	chr5	90411071	90411072	rs13357230	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	5q14.3		rs13357230-?	NR	4E-10				NR [~ 8900000] (imputed)	N
1274	chr5	90411764	90411764	rs113103901	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	5q14.3		rs113103901-AAAC	NR	4E-11		0.0114	[0.0081-0.0147] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1274	chr5	90414116	90414117	rs548308136	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Lean body mass	3,399 whole genome sequenced individuals, 11,801 European ancestry individuals	10,676 European ancestry individuals	5q14.3	ADGRV1	rs548308136-A	0.0017	3E-6		0.8631	[0.5-1.22] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1274	chr5	90417592	90417593	rs2973444	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	5q14.3		rs2973444-C	NR	1E-11		0.0245	[0.017-0.032] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
1274	chr5	90417592	90417593	rs2973444	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	5q14.3	NR	rs2973444-C	NR	2E-9		0.0252	[0.017-0.033] unit decrease	Affymetrix [9000000] (imputed)	N
1274	chr5	90420643	90420644	rs4489092	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5q14.3		rs4489092-?	NR	1E-18				NR [~ 8900000] (imputed)	N
1274	chr5	90424278	90424279	rs10514345	17903296	Kiel DP	2007-09-19	BMC Med Genet	Genome-wide association with bone mass and geometry in the Framingham Heart Study.	Hip geometry	Up to 1,094 individuals from 241 families	NA	5q14.3	GPR98	rs10514345-?	NR	2E-7	(NeckZ1)			Affymetrix [70897]	N
1274	chr5	90425041	90425042	rs4244207	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	5q14.3	Intergenic	rs4244207-?	NR	6E-6		1.484	[NR]	Affymetrix [492217] (imputed)	N
1275	chr5	90469414	90469415	rs13171944	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	5q14.3		rs13171944-A	NR	2E-6		2.5408	[1.53-3.56] unit increase	Illumina [NR] (imputed)	N
1275	chr5	90557217	90557218	rs7709505	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	5q14.3	NR	rs7709505-?	NR	7E-36				Affymetrix [NR]	N
1276	chr5	90576278	90576279	rs13355819	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal cancer	978 Austrian ancestry colorectal cancer cases, 636 Austrian ancestry advanced colorectal adenoma cases, 4,294 European ancestry controls	NA	5q14.3	Intergenic	rs13355819-?		5E-6		1.2425448	[NR]	Affymetrix [492217] (imputed)	N
1276	chr5	90579641	90579642	rs34076709	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	5q14.3		rs34076709-A	NR	5E-7		2.4144	[1.5-3.33] unit increase	Illumina [NR] (imputed)	N
1276	chr5	90611964	90611965	rs140935700	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	Progesterone levels	1,358 European ancestry men, 1,261 European ancestry women	NA	5q14.3	NR	rs140935700-A	0.013	3E-8		0.424947	[0.28-0.57] unit increase	Affymetrix [up to 8900000] (imputed)	N
1276	chr5	90622293	90622294	rs6892424	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	5q14.3	intergenic	rs6892424-T	NR	8E-6	(EA)			Illumina [up to 11995908] (imputed)	N
1276	chr5	90659328	90659329	rs7720235	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q14.3	NR	rs7720235-T	0.248046	2E-13				Affymetrix, Illumina [24246363] (imputed)	N
1276	chr5	90659328	90659329	rs7720235	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q14.3	NR	rs7720235-T	0.255132	2E-11				Affymetrix, Illumina [20825802] (imputed)	N
1276	chr5	90662838	90662839	rs12110303	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	5q14.3	NR	rs12110303-T	0.1597	1E-11	(EA)	0.0606	[0.043-0.078] unit decrease	Illumina [~ 11800000] (imputed)	N
1276	chr5	90674718	90674719	rs72771512	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	5q14.3	ARRDC3	rs72771512-A	0.0244529999999999	2E-11		0.048734415	[0.034-0.063] unit decrease	Affymetrix [93095623] (imputed)	N
1276	chr5	90679262	90679263	rs139441768	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	Progesterone levels	1,358 European ancestry men, 1,261 European ancestry women	NA	5q14.3	NR	rs139441768-C	0.011	1E-8		0.45207	[0.3-0.61] unit increase	Affymetrix [up to 8900000] (imputed)	N
1277	chr5	90732224	90732225	rs10474352	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	5q14.3		rs10474352-C	NR	1E-16		1.06	[1.05-1.08]	Affymetrix, Illumina [NR] (imputed)	N
1277	chr5	90732224	90732225	rs10474352	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	5q14.3	ARRDC3	rs10474352-C	0.84	5E-11	(EA)	1.0638298	[1.03-1.09] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
1277	chr5	90732224	90732225	rs10474352	25038754	Cai Q	2014-07-20	Nat Genet	Genome-wide association analysis in East Asians identifies breast cancer susceptibility loci at 1q32.1, 5q14.3 and 15q26.1.	Breast cancer	2,867 Chinese ancestry cases, 2,285 Chinese ancestry controls, 2,246 Korean ancestry cases, 2,052 Korean ancestry controls	5,029 Chinese ancestry cases, 5,302 Chinese ancestry controls, 6,066 Korean ancestry cases, 8,003 Korean ancestry controls, 6,572 Japanese ancestry cases, 6,539 Japanese ancestry controls, 16,003 European ancestry cases, 41,335 European ancestry controls	5q14.3	ARRDC3	rs10474352-C	0.482	2E-9	(East Asian)	1.09	[1.06-1.12]	Affymetrix [up to 1930412] (imputed)	N
1277	chr5	90747018	90747019	rs10715060	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	5q14.3		rs10715060-G	0.155029	6E-9		0.0179376	[0.012-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1277	chr5	90762747	90762748	rs933688	19247474	Caporaso N	2009-02-27	PLoS One	Genome-wide and candidate gene association study of cigarette smoking behaviors.	Smoking behavior	2,617 European ancestry smokers, 1,725 European ancestry controls	NA	5q14.3	LOC133789	rs933688-?	0.17	6E-6	(EVNV)	1.48	[NR]	Illumina [~ 518000]	N
1277	chr5	90789469	90789470	rs332529	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	5q14.3		rs332529-A	NR	3E-9		0.0147	[0.0098-0.0196] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
1277	chr5	90789469	90789470	rs332529	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	5q14.3		rs332529-A	NR	4E-9		0.0147	[0.0098-0.0196] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
1277	chr5	90789469	90789470	rs332529	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	5q14.3	NR	rs332529-A	0.1605	9E-12	(EA)	0.0606	[0.043-0.078] unit decrease	Illumina [~ 11800000] (imputed)	N
1277	chr5	90789809	90789810	rs332530	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	5q14.3	NR	rs332530-T	0.155599	3E-12		0.018409	[0.013-0.024] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1277	chr5	90816401	90816402	rs10474356	30279459	van der Meer D	2018-10-02	Mol Psychiatry	Brain scans from 21,297 individuals reveal the genetic architecture of hippocampal subfield volumes.	Hippocampal tail volume (corrected for total hippocampal volume)	21,297 European ancestry individuals	NA	5q14.3		rs10474356-G	NR	1E-14		7.11	NR mm3 decrease	Affymetrix, Illumina [NR] (imputed)	N
1277	chr5	90816401	90816402	rs10474356	30279459	van der Meer D	2018-10-02	Mol Psychiatry	Brain scans from 21,297 individuals reveal the genetic architecture of hippocampal subfield volumes.	Hippocampal tail volume	21,297 European ancestry individuals	NA	5q14.3		rs10474356-G	NR	7E-15		10.58	NR mm3 decrease	Affymetrix, Illumina [NR] (imputed)	N
1278	chr5	90856361	90856362	rs9885526	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	5q14.3	NR	rs9885526-?		6E-9				NR [7428630] (imputed)	N
1278	chr5	90890017	90890018	rs7721647	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	5q14.3	NR	rs7721647-T	0.3015	2E-6	(EA)	0.032	[0.019-0.045] unit decrease	Illumina [~ 11800000] (imputed)	N
1278	chr5	90919650	90919651	rs72771598	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	5q14.3	Intergenic	rs72771598-A	0.2527	1E-11	(MTAG)	0.0139	[0.0098-0.018] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1278	chr5	90919650	90919651	rs72771598	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	5q14.3	Intergenic	rs72771598-G	0.7473	3E-10		0.0142	[0.0099-0.0185] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1278	chr5	90919650	90919651	rs72771598	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	5q14.3	Intergenic	rs72771598-A	0.2531	2E-8	(MTAG)	0.0108	[0.0071-0.0145] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1278	chr5	90929422	90929423	rs2202509	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	5q14.3	NR	rs2202509-?		9E-9				NR [7428630] (imputed)	N
1278	chr5	90949681	90949682	rs2962379	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	5q14.3		rs2962379-A	0.48	6E-9		5.82	z score increase	Affymetrix [9061022] (imputed)	N
1278	chr5	90949681	90949682	rs2962379	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	5q14.3	NR	rs2962379-A	0.4829	5E-9				NR [9056863] (imputed)	N
1278	chr5	90950209	90950210	rs2962378	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	5q14.3		rs2962378-A	0.7872	4E-9		0.0101	[0.0068-0.0134] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1278	chr5	90950209	90950210	rs2962378	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	5q14.3	Intergenic	rs2962378-A	0.7872	4E-10	(MTAG)	0.01	[0.0069-0.0131] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1279	chr5	90981386	90981387	rs13153333	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Subcutaneous adipose tissue	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	5q14.3	ARRDC3	rs13153333-G	0.04	8E-6	(women)			Affymetrix, Illumina [2500000] (imputed)	N
1279	chr5	91026340	91026341	rs1692437	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	5q14.3		rs1692437-C	0.46	3E-14		7.61	z score increase	Affymetrix [9061022] (imputed)	N
1279	chr5	91026340	91026341	rs1692437	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	5q14.3		rs1692437-?	NR	2E-8				NR [9705931] (imputed)	N
1280	chr5	91096262	91096263	rs34156429	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	5q14.3	NR	rs34156429-A	0.186879	4E-9		0.04721786	[0.031-0.063] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1280	chr5	91096262	91096263	rs34156429	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	5q14.3	Intergenic	rs34156429-A	0.7824	8E-11	(MTAG)	0.0181	[0.013-0.024] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1280	chr5	91096262	91096263	rs34156429	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	5q14.3	Intergenic	rs34156429-A	0.7824	4E-9		0.0205	[0.014-0.027] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
1280	chr5	91101677	91101678	rs2913445	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	5q14.3	Intergenic	rs2913445-C	0.3293	3E-11	(MTAG)	0.0126	[0.0089-0.0163] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1280	chr5	91101677	91101678	rs2913445	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	5q14.3	Intergenic	rs2913445-G	0.6707	6E-9		0.0121	[0.008-0.0162] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1280	chr5	91104305	91104306	rs2913436	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	5q14.3	Intergenic	rs2913436-T	0.3578	2E-8	(MTAG)	0.0096	[0.0063-0.0129] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1280	chr5	91111786	91111787	rs2913411	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	5q14.3	NR	rs2913411-?	NR	2E-6		4.748	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1280	chr5	91163649	91163650	rs13362153	30954325	Kamboh MI	2019-03-11	Neurobiol Aging	Population-based genome-wide association study of cognitive decline in older adults free of dementia: identification of a novel locus for the attention domain.	Age-related cognitive decline (language) (slope of z-scores)	1,145 European ancestry individuals	NA	5q14.3	ARRDC3-AS1, NR2F1-AS1	rs13362153-G	0.24	6E-6		0.21	unit increase	Illumina [5600000] (imputed)	N
1280	chr5	91193776	91193777	rs10942650	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	5q14.3		rs10942650-T	NR	8E-11		0.0124	[0.0087-0.0161] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1280	chr5	91193776	91193777	rs10942650	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	5q14.3		rs10942650-T	0.165966	7E-9		0.0218497	[0.014-0.029] unit increase	Illumina [13479924] (imputed)	N
1281	chr5	91270085	91270086	rs406052	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	5q14.3	NR	rs406052-A	0.961	7E-9		0.0161427	[0.011-0.022] unit decrease	NR [9732723] (imputed)	N
1281	chr5	91275312	91275313	rs421379	25526632	Rafiq S	2014-12-19	PLoS One	A genome wide meta-analysis study for identification of common variation associated with breast cancer prognosis.	Breast cancer (survival)	1,341 European ancestry cases	1,523 European ancestry cases	5q14.3	ARRDC3	rs421379-?	NR	1E-6		1.49	[1.27-1.75]	Illumina [6500000] (imputed)	N
1281	chr5	91275312	91275313	rs421379	23319801	Rafiq S	2013-01-14	Cancer Res	Identification of inherited genetic variations influencing prognosis in early-onset breast cancer.	Breast cancer (prognosis)	536 European ancestry early-onset cases	1,516 European ancestry early-onset cases	5q14.3	ARRDC3	rs421379-?	0.05	1E-6		1.61	[1.33-1.96]	Illumina [487496]	N
1282	chr5	91366273	91366274	rs181508347	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	5q14.3	NR	rs181508347-G	0.00965	5E-10		0.08107577	[0.056-0.107] unit increase	NR [~ 10000000] (imputed)	N
1282	chr5	91387737	91387738	rs10075741	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	TRAIL levels	8,186 Finnish ancestry individuals	NA	5q14.3	NR	rs10075741-G		3E-6		0.0881	[0.051-0.125] SD units decrease	NR [10700000] (imputed)	N
1282	chr5	91434131	91434132	rs13168251	32562552	Chua KC	2020-06-20	Clin Pharmacol Ther	Genome-Wide Meta-Analysis Validates a Roless for S1PR1 in Microtubule Targeting Agent-Induced Sensory Peripheral Neuropathy.	Sensory peripheral neuropathy in microtubule targeting agent-treated breast cancer	1,324 European ancestry individuals	NA	5q14.3	LOC100129716	rs13168251-?		7E-6		0.295	[NR] unit increase	Illumina [6030476] (imputed)	N
1283	chr5	91494592	91494593	rs10474392	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Stromal-cell-derived factor 1 alpha levels	5,998 Finnish ancestry individuals	NA	5q14.3	NR	rs10474392-G		1E-6		0.0962	[0.061-0.131] SD units decrease	NR [10700000] (imputed)	N
1283	chr5	91518720	91518721	rs10055544	22610502	Kennedy RB	2012-05-19	Hum Genet	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IL-10)	Up to 512 European ancestry individuals, up to 199 African American individuals	NA	5q14.3	LOC100131236	rs10055544-A		1E-7	(AA)			Illumina [NR]	N
1283	chr5	91607147	91607148	rs35539975	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	5q14.3	NR	rs35539975-A	0.7785	4E-9		1.043	[1.03-1.06]	Affymetrix, Illumina [NR] (imputed)	N
1285	chr5	91791852	91791853	rs28599560	33045005	Vogelezang S	2020-10-12	PLoS Genet	Novel loci for childhood body mass index and shared heritability with adult cardiometabolic traits.	Childhood body mass index	39,620 European ancestry individuals	NA	5q14.3	FLJ42709	rs28599560-A	0.61	4E-7		0.04	[0.024-0.056] unit increase	Affymetrix, Illumina [8227808] (imputed)	N
1285	chr5	91843368	91843369	rs77151571	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	5q14.3		rs77151571-C	NR	3E-8		0.0288	[0.019-0.039] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1285	chr5	91845529	91845530	rs77563704	33852427	Wittekind DA	2021-04-01	Eur J Endocrinol	Genome-wide association and transcriptome analysis suggests total serum ghrelin to be linked with GFRAL.	ghrelin levels	1,501 individuals	NA	5q14.3	RP11-133	rs77563704-A	NR	4E-7		0.17	[0.11-0.24] unit decrease	Affymetrix [9868623] (imputed)	N
1286	chr5	91893791	91893792	rs1027643	22544364	Turnbull C	2012-04-29	Nat Genet	A genome-wide association study identifies susceptibility loci for Wilms tumor.	Wilms tumor	757 European ancestry cases, 1,879 European ancestry controls	1,488 European ancestry cases, 3,851 European ancestry controls	5q14.3	NR	rs1027643-T	0.05	5E-10		1.43	[1.18-1.73]	Illumina [599255]	N
1286	chr5	91900784	91900785	rs17082391	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	5q14.3	ARRDC3-AS1, FLJ42709	rs17082391-C		5E-7		0.544	unit increase	Affymetrix [at least 2696785] (imputed)	N
1286	chr5	91900784	91900785	rs17082391	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	5q14.3	ARRDC3-AS1, FLJ42709	rs17082391-C		1E-8		0.375	unit increase	Affymetrix [at least 2696785] (imputed)	N
1286	chr5	91913756	91913757	rs113584171	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	5q14.3		rs113584171-T	NR	4E-11		0.0361	[0.025-0.047] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
1286	chr5	91913756	91913757	rs113584171	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	5q14.3		rs113584171-T	NR	5E-9		0.0331	[0.022-0.044] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1286	chr5	91920776	91920777	rs148540016	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	5q14.3		rs148540016-?	NR	6E-9				NR [~ 8900000] (imputed)	N
1286	chr5	91920957	91920958	rs181808701	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Diastolic blood pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	5q14.3	chr5mb91	rs181808701-T	0.025296063	1E-7		0.5134	[0.32-0.7] unit decrease	Affymetrix [~ 9800000] (imputed)	N
1286	chr5	91955643	91955644	rs112103172	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	5q14.3	NR	rs112103172-?	NR	6E-6		4.516	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1286	chr5	92011234	92011235	rs1501916	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 159)	19,670 European ancestry individuals	NA	5q14.3		rs1501916-?	NR	6E-10				NR [9705931] (imputed)	N
1287	chr5	92023660	92023661	rs13355146	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	5q14.3	NR	rs13355146-?	NR	5E-6		0.0079453	[0.0045-0.0114] unit increase	Affymetrix [805426] (imputed)	N
1287	chr5	92041527	92041528	rs10223255	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	5q14.3	Intergenic	rs10223255-A	0.4593	1E-10	(MTAG)	0.0107	[0.0074-0.014] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1287	chr5	92048983	92048984	rs1532695	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	5q14.3		rs1532695-C	0.68202	1E-6		0.035547	[0.021-0.05] unit decrease	Affymetrix [15580782] (imputed)	N
1287	chr5	92053866	92053867	rs258951	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	5q14.3		rs258951-?	NR	8E-8				NR [~ 8900000] (imputed)	N
1287	chr5	92053866	92053867	rs258951	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	5q14.3	Intergenic	rs258951-A	0.5417	3E-9	(MTAG)	0.0107	[0.0072-0.0142] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1287	chr5	92053866	92053867	rs258951	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	5q14.3	Intergenic	rs258951-T	0.4583	2E-8		0.0109	[0.007-0.0148] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1287	chr5	92090342	92090343	rs34969	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	5q14.3	NR	rs34969-T	0.4632	2E-9	(Inferior Parietal)	18.323107	[12.36-24.29] unit increase	Affymetrix, Illumina [NR]	N
1287	chr5	92092603	92092604	rs10056913	29682794	Szekely E	2018-04-22	Genet Epidemiol	Genetic associations with childhood brain growth, defined in two longitudinal cohorts.	Right lateral prefrontal cortical growth	581 European ancestry individuals, 31 African American individuals, 8 Asian American individuals, 15 admixed individuals, 80 other ancestries individuals	NA	5q14.3	NR2F1-AS1, ARRDC3-AS1	rs10056913-?	NR	4E-7				Illumina [at least 653030]	N
1287	chr5	92092603	92092604	rs10056913	29682794	Szekely E	2018-04-22	Genet Epidemiol	Genetic associations with childhood brain growth, defined in two longitudinal cohorts.	Cerebral cortical growth	581 European ancestry individuals, 31 African American individuals, 8 Asian American individuals, 15 admixed individuals, 80 other ancestries individuals	NA	5q14.3	ARRDC3-AS1, NR2F1-AS1	rs10056913-?	NR	5E-6				Illumina [at least 653030]	N
1287	chr5	92103787	92103788	rs116444385	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	5q14.3	NR	rs116444385-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
1287	chr5	92134272	92134273	rs27540	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	5q14.3	NR	rs27540-A	0.5577	8E-12	(Inferior Parietal)	20.91004	[14.92-26.9] unit decrease	Affymetrix, Illumina [NR]	N
1288	chr5	92154578	92154579	rs17668565	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	5q14.3	intergenic	rs17668565-G	0.403	9E-6	(BMI z-score )	0.03	[NR] SD increase	Illumina [899892]	N
1288	chr5	92154578	92154579	rs17668565	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	5q14.3	intergenic	rs17668565-G	0.403	7E-6	(Hip circumference )	0.02	[NR] cm increase	Illumina [899892]	N
1288	chr5	92154578	92154579	rs17668565	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	5q14.3	intergenic	rs17668565-G	0.403	5E-7	(Weight z-score )	0.03	[NR] SD increase	Illumina [899892]	N
1288	chr5	92154578	92154579	rs17668565	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	5q14.3	intergenic	rs17668565-G	0.403	2E-6	(Fat mass )	0.03	[NR] % increase	Illumina [899892]	N
1288	chr5	92171561	92171562	rs12188937	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	5q14.3	CTC-458G6.4	rs12188937-C	0.455	2E-9		0.012080989	[0.0081-0.016] unit increase	Affymetrix [up to 18485882] (imputed)	N
1288	chr5	92182751	92182752	rs6867851	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 50)	19,670 European ancestry individuals	NA	5q14.3		rs6867851-?	NR	5E-17				NR [9705931] (imputed)	N
1288	chr5	92182751	92182752	rs6867851	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	5q14.3	NR	rs6867851-?	NR	7E-6		4.493	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1288	chr5	92186058	92186059	rs888812	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	5q14.3	FAM178B, FAHD2B, ANKRD36, COX5B, ACTR1B, ZAP70, TMEM131	rs888812-?		2E-16				NR [7428630] (imputed)	N
1288	chr5	92186058	92186059	rs888812	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	5q14.3	NR	rs888812-?		1E-15				NR [7428630] (imputed)	N
1288	chr5	92186428	92186429	rs888814	32963231	Hofer E	2020-09-22	Nat Commun	Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.	Cortical volume	22,824 European and African American ancestry individuals	NA	5q14.3	NR2F1, AS1	rs888814-?		3E-13	(Superior frontal)			Affymetrix, Illumina [NR] (imputed)	N
1288	chr5	92186428	92186429	rs888814	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	5q14.3	NR	rs888814-T	0.5001	8E-8	(Precuneus)	11.834576	[7.52-16.15] unit increase	Affymetrix, Illumina [NR]	N
1288	chr5	92187931	92187932	rs17669337	32963231	Hofer E	2020-09-22	Nat Commun	Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.	Cortical surface area	18,617 European and African American ancestry individuals	22,363 European ancestry individuals	5q14.3	NR2F1-AS1	rs17669337-?		8E-16	(Superior frontal)			Affymetrix, Illumina [NR] (imputed)	N
1288	chr5	92187931	92187932	rs17669337	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	5q14.3	NR	rs17669337-T	0.4123	1E-13	(Superior Frontal)	28.838717	[21.24-36.44] unit decrease	Affymetrix, Illumina [NR]	N
1288	chr5	92187931	92187932	rs17669337	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	5q14.3	Intergenic	rs17669337-T	0.4075	6E-23	(MTAG)	0.018	[0.014-0.022] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1288	chr5	92187931	92187932	rs17669337	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	5q14.3	Intergenic	rs17669337-C	0.5925	7E-17		0.0165	[0.013-0.02] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1288	chr5	92187931	92187932	rs17669337	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	5q14.3	Intergenic	rs17669337-T	0.4079	2E-28	(MTAG)	0.0186	[0.015-0.022] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1288	chr5	92187931	92187932	rs17669337	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	5q14.3	Intergenic	rs17669337-C	0.5921	5E-17		0.0193	[0.015-0.024] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1288	chr5	92187931	92187932	rs17669337	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	5q14.3		rs17669337-T	0.4133	1E-14		0.011	[0.0083-0.0137] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1288	chr5	92187931	92187932	rs17669337	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	5q14.3	Intergenic	rs17669337-T	0.4133	2E-21	(MTAG)	0.0126	[0.01-0.015] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1288	chr5	92187931	92187932	rs17669337	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	5q14.3	Intergenic	rs17669337-T	0.4124	2E-16	(MTAG)	0.0191	[0.015-0.024] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1288	chr5	92198595	92198596	rs6870189	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	5q14.3		rs6870189-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1288	chr5	92201079	92201080	rs6556982	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	5q14.3		rs6556982-T	0.4007	4E-14	(conditional-joint)	0.0108	[0.0081-0.0135] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1288	chr5	92255165	92255166	rs2635182	30804558	Grove J	2019-02-25	Nat Genet	Identification of common genetic risk variants for autism spectrum disorder.	Autism spectrum disorder	18,381 European ancestry cases, 27,969 European ancestry controls	2,119 European ancestry cases, 142,379 European ancestry controls	5q14.3	Intergenic	rs2635182-T	0.466	5E-7		1.067	[NR]	Illumina [9112387] (imputed)	N
1289	chr5	92312057	92312058	rs163951	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	5q14.3	NR	rs163951-C	0.63	1E-9		0.00683906	[0.0046-0.009] unit increase	NR [9732723] (imputed)	N
1289	chr5	92336478	92336479	rs142233735	27629369	Gao J	2016-09-15	Neuropsychopharmacology	Genome-Wide Association Study of Loneliness Demonstrates a Role for Common Variation.	Loneliness (multivariate analysis)	8,490 European ancestry individuals, 1,228 African American individuals, 867 Hispanic American individuals, 175 individuals	NA	5q15	ARRDC3-AS1, NR2F1-AS1	rs142233735-?	NR	8E-6	(EA)			Illumina [7205781] (imputed)	N
1289	chr5	92343194	92343195	rs147721431	24322204	Winham SJ	2013-12-10	Mol Psychiatry	Genome-wide association study of bipolar disorder accounting for effect of body mass index identifies a new risk allele in TCF7L2.	Bipolar disorder (body mass index interaction)	388 European ancestry cases, 1,020 European ancestry controls	NA	5q15	NR	rs147721431-?	NR	1E-6				NR [up to 8466825] (imputed)	N
1289	chr5	92379768	92379772	rs10529809	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	5q15		rs10529809-A	NR	5E-11		0.0116	[0.0081-0.0151] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1289	chr5	92379768	92379772	rs10529809	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	5q15		rs10529809-A	NR	4E-9		0.0119	[0.008-0.0158] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1290	chr5	92415110	92415111	rs2009416	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	5q15		rs2009416-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1290	chr5	92441593	92441594	rs55971857	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	5q15	NR	rs55971857-?	NR	1E-7		5.293	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1290	chr5	92455654	92455655	rs4869412	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	5q15	NR2F1	rs4869412-G	0.49	2E-10		0.4	[0.28-0.52] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1290	chr5	92455654	92455655	rs4869412	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	5q15	NR2F1	rs4869412-G	0.4743	8E-11		0.4294	[0.3-0.56] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1290	chr5	92464415	92464416	rs12519773	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NA	5q15	intergenic	rs12519773-?	0.52	2E-6		1.05	[1.03-1.08]	Affymetrix, Illumina [~ 2300000] (imputed)	N
1290	chr5	92468866	92468867	rs4308464	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	5q15	NR	rs4308464-C	NR	1E-10		6.437	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1290	chr5	92477889	92477890	rs4342312	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	5q15	NR	rs4342312-C	0.365805	1E-9		0.039525844	[0.027-0.052] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1290	chr5	92477889	92477890	rs4342312	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	5q15	Intergenic	rs4342312-A	0.3777	1E-9		0.0179	[0.012-0.024] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
1290	chr5	92487542	92487543	rs13173682	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	5q15	NR	rs13173682-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1290	chr5	92487542	92487543	rs13173682	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	5q15	POLD2P1	rs13173682-A	0.231	9E-6	(Moderate&vigorous activity )	0.02	[NR] min/d increase	Illumina [899892]	N
1290	chr5	92487542	92487543	rs13173682	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	5q15	POLD2P1	rs13173682-A	0.231	6E-6	(Moderate activity )	0.03	[NR] min/d increase	Illumina [899892]	N
1290	chr5	92512480	92512481	rs6897863	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure in major depressive disorder-negative individuals	10,701 European ancestry cases, 39,677 European ancestry controls	NA	5q15	NR	rs6897863-A	0.591422	2E-6		1.1363636	[1.08-1.19]	Affymetrix [7791636] (imputed)	N
1291	chr5	92537335	92537336	rs11738974	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	5q15		rs11738974-?	NR	3E-10				NR [~ 8900000] (imputed)	N
1291	chr5	92546236	92546237	rs4242244	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	5q15	NA	rs4242244-?		6E-9				Affymetrix, Illumina [NR] (imputed)	N
1291	chr5	92546236	92546237	rs4242244	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	5q15	NA	rs4242244-T	0.5788	2E-10		0.0109	[0.0076-0.0142] unit increase	NR [~ 27400000] (imputed)	N
1291	chr5	92549154	92549155	rs4370258	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	5q15	Intergenic	rs4370258-T	0.6205	2E-16		0.0166	[0.013-0.021] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1291	chr5	92549154	92549155	rs4370258	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	5q15	Intergenic	rs4370258-T	0.6197	4E-13		0.0169	[0.012-0.021] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1291	chr5	92560815	92560816	rs59399491	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	5q15	NR	rs59399491-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
1291	chr5	92562014	92562015	rs11742251	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	5q15	NR	rs11742251-A	NR	4E-9		5.886	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1291	chr5	92562937	92562938	rs6871374	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	5q15	Intergenic	rs6871374-A	0.6175	8E-20	(MTAG)	0.0168	[0.013-0.02] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1291	chr5	92567538	92567539	rs4869419	21273288	Del Greco M F	2011-01-27	Hum Mol Genet	Genome-wide association analysis and fine mapping of NT-proBNP level provide novel insight into the role of the MTHFR-CLCN6-NPPA-NPPB gene cluster.	Natriuretic peptide levels	1,325 European ancestry individuals	1,746 European ancestry individuals	5q15	CCT7P2	rs4869419-G	0.08	4E-6		0.2	[0.12-0.28] unit decrease	Illumina [~ 2500000] (imputed)	N
1291	chr5	92568455	92568456	rs55763037	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	5q15	NR	rs55763037-A	NR	4E-8		5.503	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1291	chr5	92574384	92574385	rs6873367	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	5q15	Intergenic	rs6873367-T	0.6447	1E-19	(MTAG)	0.0156	[0.012-0.019] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1291	chr5	92574632	92574633	rs6885199	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	5q15	NA	rs6885199-A	0.0362	3E-9		0.0277	[0.018-0.037] unit increase	NR [~ 27400000] (imputed)	N
1291	chr5	92586990	92586991	rs6881733	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	5q15		rs6881733-T	0.287	4E-8		0.0086	[0.0055-0.0117] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1291	chr5	92586990	92586991	rs6881733	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	5q15	Intergenic	rs6881733-T	0.287	2E-12	(MTAG)	0.0102	[0.0073-0.0131] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1291	chr5	92586990	92586991	rs6881733	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	5q15	Intergenic	rs6881733-T	0.288	5E-12	(MTAG)	0.0174	[0.013-0.022] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1291	chr5	92586990	92586991	rs6881733	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	5q15	NR	rs6881733-T	NR	2E-9		5.995	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1291	chr5	92586990	92586991	rs6881733	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	5q15	NR	rs6881733-?	NR	1E-6		4.874	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1291	chr5	92611207	92611208	rs56821385	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	5q15	NR	rs56821385-T	0.970478	4E-8		0.033091	[0.021-0.045] unit decrease	NR [NR]	N
1291	chr5	92622420	92622421	rs142503704	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		5q15	NR2F1	rs142503704-G	0.97711	2E-8		0.0262684	[0.017-0.035] unit decrease	Affymetrix [12370749]	N
1291	chr5	92622420	92622421	rs142503704	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	5q15	NR	rs142503704-?	NR	5E-10				Affymetrix [~ 8270000] (imputed)	N
1291	chr5	92635677	92635678	rs61341720	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 138)	19,670 European ancestry individuals	NA	5q15		rs61341720-?	NR	1E-8				NR [9705931] (imputed)	N
1292	chr5	92674286	92674287	rs13171212	33594131	Donati G	2021-02-16	Sci Rep	Evidence for specificity of polygenic contributions to attainment in English, maths and science during adolescence.	Academic attainment (science)	6,089 European ancestry adolescents	NA	5q15	NR	rs13171212-T	NR	3E-6		0.097	[0.056-0.138] unit decrease	Illumina [6319684] (imputed)	N
1292	chr5	92674999	92675000	rs4869194	33594131	Donati G	2021-02-16	Sci Rep	Evidence for specificity of polygenic contributions to attainment in English, maths and science during adolescence.	Academic attainment (science)	6,089 European ancestry adolescents	NA	5q15	NR	rs4869194-T	NR	7E-6		0.104	[0.059-0.149] unit decrease	Illumina [6319684] (imputed)	N
1292	chr5	92676616	92676616	rs66954590	34272439	Foo H	2021-07-16	Sci Rep	Novel genetic variants associated with brain functional networks in 18,445 adults from the UK Biobank.	Brain functional connectivity measurement (strength default)	18,445 British ancestry individuals	NA	5q15		rs66954590-C	0.288	3E-8		0.062	[0.04-0.084] unit decrease	Affymetrix [9926107] (imputed)	N
1292	chr5	92683606	92683607	rs17083079	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical thickness (min-P)	26,502 European ancestry individuals	NA	5q15	AKR1A1, NASP, CCDC17, GPBP1L1, TMEM69, IPP, MAST2, PIK3R3	rs17083079-?		3E-8				NR [7428630] (imputed)	N
1292	chr5	92688320	92688320	rs559502791	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference	1,254 whole genome sequenced European ancestry individuals, 3,074 whole genome sequenced individuals, 29,716 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 701 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,050 Mylopotamos (founder/genetic isolate) individuals, 883 Pomak (founder/genetic isolate) individuals	205,909 European ancestry individuals	5q15	NR2F1-AS1	rs559502791-T	0.9963	4E-6		0.4093	[0.24-0.58] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1292	chr5	92707734	92707735	rs269696	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	5q15		rs269696-?	NR	9E-17				NR [~ 8900000] (imputed)	N
1292	chr5	92731179	92731180	rs269704	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	5q15	NR	rs269704-C	0.236712	7E-24		0.0369018	[0.03-0.044] unit increase	NR [19129689] (imputed)	N
1292	chr5	92738198	92738199	rs2613197	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	5q15	NR	rs2613197-?	NR	2E-9	(left precentral)			NR [9227495] (imputed)	N
1292	chr5	92784777	92784778	rs12188716	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	5q15	NA	rs12188716-G		2E-8		0.0220187	[0.014-0.03] unit increase	Illumina [13288253] (imputed)	N
1292	chr5	92788277	92788278	rs7442779	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	5q15	Intergenic	rs7442779-A	0.961	4E-11		0.0332	[0.023-0.043] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1292	chr5	92797165	92797166	rs115877304	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	5q15		rs115877304-T	0.03	8E-174		28.11	z score increase	Affymetrix [9061022] (imputed)	N
1292	chr5	92797165	92797166	rs115877304	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	5q15		rs115877304-T	0.03	3E-78		18.73	z score increase	Affymetrix [9061022] (imputed)	N
1292	chr5	92797165	92797166	rs115877304	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	5,199 individuals	NA	5q15		rs115877304-T	0.03	7E-7				Affymetrix [9061022] (imputed)	N
1292	chr5	92797165	92797166	rs115877304	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	5q15		rs115877304-T	0.03	1E-91		20.3	z score increase	Affymetrix [9061022] (imputed)	N
1292	chr5	92797165	92797166	rs115877304	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	5q15	NR	rs115877304-T	0.0506	1E-17				NR [9056863] (imputed)	N
1292	chr5	92797165	92797166	rs115877304	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	5q15	NR	rs115877304-T	0.0506	1E-17				NR [9056863] (imputed)	N
1292	chr5	92797165	92797166	rs115877304	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	5q15		rs115877304-?	NR	2E-38				NR [9705931] (imputed)	N
1292	chr5	92797165	92797166	rs115877304	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	5q15	NR	rs115877304-T	0.0409	8E-17	(Superior Parietal)	66.70375	[51.02-82.39] unit increase	Affymetrix, Illumina [NR]	N
1292	chr5	92797165	92797166	rs115877304	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	5q15		rs115877304-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1292	chr5	92797165	92797166	rs115877304	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	5q15		rs115877304-T	0.0427	8E-17	(conditional-joint)	0.0297	[0.023-0.037] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1293	chr5	92849720	92849721	rs31465	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	5q15	Intergenic	rs31465-T	0.4588	3E-16		0.0186	[0.014-0.023] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1293	chr5	92866552	92866553	rs62369942	32963231	Hofer E	2020-09-22	Nat Commun	Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.	Cortical volume	22,824 European and African American ancestry individuals	NA	5q15	NR2F1-AS1	rs62369942-?		4E-10	(Superior parietal)			Affymetrix, Illumina [NR] (imputed)	N
1293	chr5	92870245	92870246	rs114468556	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	5q15		rs114468556-A	0.0421	2E-16		0.0293	[0.022-0.036] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1293	chr5	92870245	92870246	rs114468556	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	5q15	Intergenic	rs114468556-A	0.0421	1E-19	(MTAG)	0.0301	[0.024-0.037] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1293	chr5	92870245	92870246	rs114468556	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	5q15	Intergenic	rs114468556-A	0.0466	3E-10	(MTAG)	0.0344	[0.024-0.045] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1293	chr5	92891028	92891029	rs2029401	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Processed meat consumption	335,576 European ancestry individuals	NA	5q15	FAM172A	rs2029401-?	NR	9E-10		0.0151993	[0.01-0.02] unit decrease	Affymetrix [25921788] (imputed)	N
1293	chr5	92891028	92891029	rs2029401	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	5q15	Intergenic	rs2029401-A	0.4417	6E-25	(MTAG)	0.0171	[0.014-0.02] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1293	chr5	92891028	92891029	rs2029401	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	5q15		rs2029401-A	0.4278	2E-10		0.0091	[0.0064-0.0118] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1294	chr5	92933533	92933534	rs1004941	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical thickness (MOSTest)	26,502 European ancestry individuals	NA	5q15	VANGL2	rs1004941-?		6E-11				NR [7428630] (imputed)	N
1294	chr5	92946323	92946324	rs58237393	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	5q15	POU3F3	rs58237393-?		6E-30				NR [7428630] (imputed)	N
1294	chr5	92946323	92946324	rs58237393	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	5q15	NR2F1, FAM172A, POU5F2	rs58237393-?		5E-34				NR [7428630] (imputed)	N
1294	chr5	92947982	92947983	rs73135334	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	5q15		rs73135334-?	NR	2E-27				NR [9705931] (imputed)	N
1294	chr5	92948484	92948485	rs114489117	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	5q15	NR	rs114489117-A	0.1009	4E-11	(Superior Parietal)	31.659645	[22.29-41.03] unit decrease	Affymetrix, Illumina [NR]	N
1294	chr5	92948484	92948485	rs114489117	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	5q15		rs114489117-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1294	chr5	92950672	92950673	rs10064431	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	5q15	NR	rs10064431-T	0.4897	4E-7	(Precentral)	12.749566	[7.84-17.66] unit increase	Affymetrix, Illumina [NR]	N
1294	chr5	92950672	92950673	rs10064431	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Meat-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	5q15	FAM172A	rs10064431-?	NR	6E-11		0.0159263	[0.011-0.021] unit decrease	Affymetrix [25921788] (imputed)	N
1294	chr5	92950672	92950673	rs10064431	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	5q15	Intergenic	rs10064431-T	0.495	2E-27	(MTAG)	0.0194	[0.016-0.023] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1294	chr5	92950672	92950673	rs10064431	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	5q15	Intergenic	rs10064431-T	0.495	2E-27		0.0212	[0.017-0.025] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1294	chr5	92959429	92959430	rs74395607	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	5q15	NR	rs74395607-?	NR	4E-12		15744.726	NR unit decrease	Illumina [2379855]	N
1294	chr5	92995012	92995013	rs71639293	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Major depressive disorder (MTAG)	at least 170,756 European ancestry cases, at least 329,443 European ancestry controls	NA	5q15	NR	rs71639293-A	0.7979	7E-9		0.030131208	[0.02-0.04] unit increase	NR [NR]	N
1294	chr5	92995012	92995013	rs71639293	31926635	Coleman JRI	2019-11-01	Biol Psychiatry	The Genetics of the Mood Disorder Spectrum: Genome-wide Association Analyses of More Than 185,000 Cases and 439,000 Controls.	Bipolar disorder or major depressive disorder	164,933 European ancestry major depressive disorder cases, 20,352 European ancestry bipolar disorder cases, 439,741 European ancestry controls	NA	5q15	NR	rs71639293-A	NR	6E-9		1.03	[1.02-1.04]	NR [NR] (imputed)	N
1294	chr5	92995476	92995477	rs17083297	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	5q15	NR	rs17083297-C	0.8234	2E-8		1.0449321	[1.03-1.06]	Affymetrix, Illumina [NR] (imputed)	N
1294	chr5	93021115	93021116	rs115136616	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	5q15	Intergenic	rs115136616-C	0.956	3E-11		0.0367	[0.026-0.047] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1294	chr5	93033081	93033082	rs12332731	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	5q15		rs12332731-A	0.1882	6E-14		0.0135	[0.01-0.017] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1294	chr5	93038598	93038599	rs72786644	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	5q15	Intergenic	rs72786644-A	0.1853	3E-12	(MTAG)	0.0118	[0.0085-0.0151] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1294	chr5	93054860	93054861	rs17371926	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (min-P)	26,502 European ancestry individuals	NA	5q15	INTS3, SLC27A3, GATAD2B, DENND4B, CRTC2, SLC39A1, CREB3L4, JTB, RAB13, RPS27, NUP210L, TPM3, C1orf189, C1orf43, UBAP2L, HAX1	rs17371926-?		1E-12				NR [7428630] (imputed)	N
1294	chr5	93054860	93054861	rs17371926	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (min-P)	26,502 European ancestry individuals	NA	5q15	NR	rs17371926-?		4E-12				NR [7428630] (imputed)	N
1295	chr5	93071629	93071630	rs10061069	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	5q15		rs10061069-?	NR	5E-13		0.0234	unit decrease	NR [NR]	N
1295	chr5	93071629	93071630	rs10061069	30718901	Howard DM	2019-02-04	Nat Neurosci	Genome-wide meta-analysis of depression identifies 102 independent variants and highlights the importance of the prefrontal brain regions.	Depression	118,811 European ancestry cases, 327,427 European ancestry controls, 127,552 cases, 233,763 controls	414,055 European ancestry cases, 892,299 European ancestry controls	5q15	NR	rs10061069-G	0.7788	5E-22		1.025641	[1.02-1.03]	NR [8098588] (imputed)	N
1295	chr5	93071629	93071630	rs10061069	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	5q15	NR	rs10061069-C	0.228796284747818	3E-8		0.006036171	[0.0039-0.0082] unit decrease	NR [NR]	N
1295	chr5	93094117	93094118	rs55736786	30279459	van der Meer D	2018-10-02	Mol Psychiatry	Brain scans from 21,297 individuals reveal the genetic architecture of hippocampal subfield volumes.	Hippocampal tail volume (corrected for total hippocampal volume)	21,297 European ancestry individuals	NA	5q15	FAM172A, POU5F2	rs55736786-T	NR	3E-9		8.59	NR mm3 decrease	Affymetrix, Illumina [NR] (imputed)	N
1295	chr5	93096541	93096542	rs13184801	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	5q15	NR	rs13184801-G	0.2249398619719	3E-8		0.009756338	[0.0063-0.0132] unit decrease	NR [NR]	N
1295	chr5	93096541	93096542	rs13184801	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	5q15	NR	rs13184801-G	0.2249398619719	3E-8		0.0062730173	[0.004-0.0085] unit decrease	NR [NR]	N
1295	chr5	93098070	93098071	rs113647342	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	5q15	intergenic	rs113647342-T	0.934302	4E-8		5.479	z score increase	Illumina [18485882] (imputed)	N
1295	chr5	93174764	93174765	rs145120402	34929384	Mekki Y	2021-12-17	Neuroimage	The genetic architecture of language functional connectivity.	Language functional connectivity	32,186 British ancestry individuals	NA	5q15	FAM172A	rs145120402-A	0.0433	2E-9		6.0118403	unit increase (z-stat)	Affymetrix [9812367] (imputed)	N
1296	chr5	93213468	93213469	rs6874223	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	5q15	intergenic	rs6874223-A	0.93354	1E-6		4.87	z score increase	Illumina [18485882] (imputed)	N
1296	chr5	93243483	93243484	rs78423658	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		FAM172A	rs78423658-?	NR	6E-10	(male)	3.75455	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1296	chr5	93276882	93276883	rs1031423	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	5q15	NR	rs1031423-?		2E-12		0.0185194	[0.013-0.024] unit decrease	Affymetrix [19400418] (imputed)	N
1296	chr5	93303043	93303044	rs72788321	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	5q15	Intergenic	rs72788321-G	0.9723	9E-12		0.0405	[0.029-0.052] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1297	chr5	93347835	93347836	rs34322452	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	5q15	NR	rs34322452-A	0.7514	3E-15	(Postcentral)	20.314547	[15.27-25.36] unit increase	Affymetrix, Illumina [NR]	N
1297	chr5	93385557	93385558	rs141834426	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	5q15	NR	rs141834426-C	0.0399	6E-14	(Middle Temporal)	36.5931	[27.04-46.14] unit decrease	Affymetrix, Illumina [NR]	N
1297	chr5	93389326	93389327	rs62366053	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	5q15	NR	rs62366053-?	NR	9E-7		0.0085001	[0.0051-0.0119] unit decrease	Affymetrix [805426] (imputed)	N
1297	chr5	93413337	93413338	rs71641008	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Aspartate aminotransferase levels in low alcohol consumption	8,716 individuals	NA	5q15	NR	rs71641008-?	NR	4E-6		0.0763	[0.044-0.109] unit increase	Illumina [~ 7800000] (imputed)	N
1297	chr5	93413337	93413338	rs71641008	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	5q15	Intergenic	rs71641008-T	0.9615	2E-11	(MTAG)	0.0314	[0.022-0.041] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1297	chr5	93427259	93427260	rs17375167	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fruit consumption	335,576 European ancestry individuals	NA	5q15	FAM172A	rs17375167-?	NR	1E-8		0.0156547	[0.01-0.021] unit increase	Affymetrix [25921788] (imputed)	N
1298	chr5	93456148	93456149	rs142508281	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	5q15	Intergenic	rs142508281-C	0.0141	7E-11	(MTAG)	0.0458	[0.032-0.06] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1298	chr5	93456148	93456149	rs142508281	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	5q15	Intergenic	rs142508281-C	0.0129	1E-9	(MTAG)	0.0357	[0.024-0.047] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1298	chr5	93514247	93514248	rs35846197	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	5q15	Intergenic	rs35846197-G	0.9616	8E-12		0.0347	[0.025-0.045] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1298	chr5	93541241	93541242	rs185921021	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Lean body mass	3,399 whole genome sequenced individuals, 11,801 European ancestry individuals	10,676 European ancestry individuals	5q15	KIAA0825	rs185921021-T	0.0333	7E-6		0.161	[0.091-0.231] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1298	chr5	93548291	93548292	rs7378943	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 9, facial height related to vertical position of nasion)	2,187 European ancestry individuals	NA	5q15	NR	rs7378943-G	0.09331	1E-6		0.2579	[0.15-0.36] unit decrease	Illumina [10677593] (imputed)	N
1298	chr5	93555760	93555761	rs6867042	33888516	Zheng T	2021-04-22	Gut	Genome-wide analysis of 944 133 individuals provides insights into the etiology of haemorrhoidal disease.	Haemorrhoidal disease	218,920 European ancestry cases, 725,213 European ancestry controls	NA	5q15	KIAA0825	rs6867042-?	0.1252	6E-9		0.97	[0.95-0.98]	Affymetrix, Illumina [8494288] (imputed)	N
1298	chr5	93557701	93557702	rs17376456	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	5q15	NR	rs17376456-A	0.8789	7E-10	(Middle Temporal)	17.608273	[12.02-23.2] unit decrease	Affymetrix, Illumina [NR]	N
1298	chr5	93557701	93557702	rs17376456	21310492	Huang YC	2011-02-08	Ophthalmology	Genome-wide association study of diabetic retinopathy in a Taiwanese population.	Diabetic retinopathy	174 Han Chinese ancestry Type 2 diabetes cases, 575 Han Chinese ancestry Type 2 diabetes controls, 100 Han Chinese ancestry non-diabetic controls	NA	5q15	intergenic	rs17376456-A	NR	3E-15				Illumina [~ 550000]	N
1299	chr5	93590267	93590268	rs2881301	26584805	Dorajoo R	2015-11-19	Genes Nutr	A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.	Plasma omega-3 polyunsaturated fatty acid levels (alphalinolenic acid)	717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls	NA	5q15	NR	rs2881301-T	0.1622934	5E-6		0.1101	[0.063-0.157] unit decrease	Illumina [up to 1980188] (imputed)	N
1299	chr5	93598275	93598276	rs114234549	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q15	NR	rs114234549-G	0.0122	3E-10	(TMSB4X)	0.4338	NR unit increase	Illumina [1671387] (imputed)	N
1299	chr5	93598275	93598276	rs114234549	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q15	NR	rs114234549-G	0.0122	2E-9	(CAST)	0.03166	NR unit increase	Illumina [1671387] (imputed)	N
1299	chr5	93598275	93598276	rs114234549	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q15	NR	rs114234549-G	0.0122	1E-9	(LASP1)	0.07445	NR unit increase	Illumina [1671387] (imputed)	N
1299	chr5	93598275	93598276	rs114234549	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q15	NR	rs114234549-G	0.0122	1E-8	(AHNAK)	0.2055	NR unit increase	Illumina [1671387] (imputed)	N
1299	chr5	93610014	93610015	rs1380646	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	5q15	Intergenic	rs1380646-T	0.8938	3E-8	(MTAG)	0.0149	[0.0096-0.0202] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1299	chr5	93696298	93696299	rs138833221	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	5q15	KIAA0825	rs138833221-A	0.998	1E-6	(AA)	0.217	unit increase	Illumina [NR] (imputed)	N
1299	chr5	93697851	93697852	rs2434364	24792382	Park TJ	2014-04-30	Clin Chim Acta	Genome-wide association study identifies ALLC polymorphisms correlated with FEV? change by corticosteroid.	Response to inhaled corticosteroid treatment in asthma (change in FEV1)	189 Korean ancestry cases	NA	5q15	C5orf36	rs2434364-?		7E-6		0.326	[NR] unit increase	Illumina [430487]	N
1299	chr5	93709121	93709122	rs186147679	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	5q15	KIAA0825	rs186147679-A	0.998	9E-7	(AA)	0.221	unit increase	Illumina [NR] (imputed)	N
1300	chr5	93747428	93747429	rs308202	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	5q15	Intergenic	rs308202-A	0.5884	3E-8	(MTAG)	0.0101	[0.0066-0.0136] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1300	chr5	93747428	93747429	rs308202	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	5q15	Intergenic	rs308202-A	0.5884	9E-10		0.0121	[0.0082-0.016] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1300	chr5	93810207	93810208	rs6869388	22318345	Cha PC	2012-02-09	J Hum Genet	A genome-wide association study identifies SNP in DCC is associated with gallbladder cancer in the Japanese population.	Gallbladder cancer	41 Japanese ancestry cases, 866 Japanese ancestry controls	30 Japanese ancestry cases, 898 Japanese ancestry controls	5q15	NR	rs6869388-C	0.04	7E-6		72.7	[11.19-472.10]	Illumina [425706] (imputed)	N
1301	chr5	93893085	93893086	rs72771696	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	5q15	NR	rs72771696-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
1301	chr5	93918391	93918392	rs1031389	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	5q15		rs1031389-A	0.5125	5E-9	(conditional-joint)	0.0082	[0.0055-0.0109] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1301	chr5	93918391	93918392	rs1031389	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	5q15	Intergenic	rs1031389-A	0.5125	5E-9	(MTAG)	0.0076	[0.0051-0.0101] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1301	chr5	93927704	93927705	rs10074178	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	5q15		rs10074178-A	0.5129	2E-8		0.0079	[0.0052-0.0106] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1301	chr5	93949603	93949604	rs2047318	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	5q15		rs2047318-A	0.19	2E-20		9.27	z score increase	Affymetrix [9061022] (imputed)	N
1301	chr5	93949603	93949604	rs2047318	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	5q15	NR	rs2047318-A	0.2187	1E-17				NR [9056863] (imputed)	N
1301	chr5	93960907	93960907	rs11416356	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	5q15		rs11416356-?	NR	6E-10				NR [9705931] (imputed)	N
1302	chr5	94062809	94062810	rs66901899	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	5q15	SH3RF3	rs66901899-?		1E-12				NR [7428630] (imputed)	N
1302	chr5	94073488	94073489	rs11955417	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	5q15	ANKRD32, MCTP1	rs11955417-?		9E-11				NR [7428630] (imputed)	N
1302	chr5	94074809	94074810	rs11956431	33190678	Ho YYW	2020-10-01	Twin Res Hum Genet	Comparison of Genome-Wide Association Scans for Quantitative and Observational Measures of Human Hair Curvature.	Hair curvature (quantitative)	2,225 European ancestry individuals	NA	5q15	NR	rs11956431-?		5E-6		0.038	[0.021-0.055] unit increase	Illumina [7533529] (imputed)	N
1302	chr5	94102341	94102342	rs138569214	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	5q15	Intergenic	rs138569214-G	0.9682	4E-8		0.0305	[0.02-0.041] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1303	chr5	94121446	94121447	rs17391705	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	5q15	NR	rs17391705-?	NR	2E-6	(AA)	50.12	[47.53-52.71]	Illumina [905956]	N
1303	chr5	94121582	94121583	rs255353	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	5q15	MCTP1	rs255353-A	0.375	8E-6		1.05264	[1.03-1.08]	NR [9372253] (imputed)	N
1303	chr5	94148537	94148538	rs469339	23568457	Wade TD	2013-04-09	Int J Eat Disord	Genetic variants associated with disordered eating.	Anorexia nervosa	237 European ancestry female cases, 2,287 European ancestry female controls	NA	5q15	MCTP1	rs469339-A	0.977	3E-6		0.144	[0.083-0.205] unit decrease	Illumina [6150213] (imputed)	N
1303	chr5	94154587	94154588	rs17418283	19416921	Scott LJ	2009-05-05	Proc Natl Acad Sci U S A	Genome-wide association and meta-analysis of bipolar disorder in individuals of European ancestry.	Bipolar disorder	3,683 European ancestry cases, 14,507 European ancestry controls	NA	5q15	MCTP1	rs17418283-C	0.28	1E-7		1.21	[1.13-1.30]	Affymetrix, Illumina [2366197] (imputed)	N
1303	chr5	94186262	94186263	rs152285	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	5q15		rs152285-C	0.092	2E-10		0.014	[0.01-0.018] unit decrease	NR [NR] (imputed)	N
1303	chr5	94195463	94195464	rs499927	31497858	Dumitrescu L	2019-09-01	Brain	Sex differences in the genetic predictors of Alzheimer's pathology.	Neuritic plaque	2,701 European ancestry men, 3,275 European ancestry women	NA	5q15	MCTP1	rs499927-G	0.092381	3E-6		0.525897	[0.31-0.75] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1303	chr5	94198289	94198290	rs42417	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	5q15	MCTP1	rs42417-T	0.6902	3E-11		0.015655603	[0.011-0.02] unit increase	Affymetrix [11514654] (imputed)	N
1303	chr5	94198289	94198290	rs42417	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	5q15	NR	rs42417-T	0.691	2E-11		0.00791664	[0.0056-0.0102] unit increase	NR [9732723] (imputed)	N
1303	chr5	94198289	94198290	rs42417	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	5q15	NR	rs42417-T	0.691	8E-10		0.016929572	[0.012-0.022] unit increase	NR [~ 10000000] (imputed)	N
1303	chr5	94202166	94202167	rs27003	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking initiation (ever regular vs never regular)	up to 433,216 European ancestry individuals	NA	5q15	MCTP1	rs27003-C	0.694	8E-9		0.0143	[0.0094-0.0192] unit increase	Illumina [~ 250000] (imputed)	N
1303	chr5	94202166	94202167	rs27003	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	5q15		rs27003-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1303	chr5	94205836	94205837	rs27002	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	5q15	MCTP1	rs27002-C	NR	4E-6		1.0566356	NR	Affymetrix, Illumina [8278136] (imputed)	N
1303	chr5	94206201	94206202	rs159032	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	5q15	NA	rs159032-T	0.2325	6E-10		0.0124	[0.0085-0.0163] unit increase	NR [~ 27400000] (imputed)	N
1303	chr5	94206389	94206390	rs293058	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	5q15	NR	rs293058-?	NR	4E-7		0.008771	[0.0054-0.0122] unit decrease	Affymetrix [805426] (imputed)	N
1303	chr5	94215893	94215894	rs159029	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	5q15	NR	rs159029-?	NR	4E-10				Affymetrix [~ 8270000] (imputed)	N
1303	chr5	94215893	94215894	rs159029	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	5q15		rs159029-?	NR	6E-10				NR [~ 8900000] (imputed)	N
1303	chr5	94222407	94222408	rs40590	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking initiation	842,717 European ancestry individuals	NA	5q15	MCTP1	rs40590-C		6E-10		0.979	[NR]	Affymetrix [up to 79000000] (imputed)	N
1303	chr5	94234298	94234299	rs192514502	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	5q15	MCTP1	rs192514502-T	0.999	3E-6	(AA)	0.476	unit increase	Illumina [NR] (imputed)	N
1303	chr5	94234298	94234299	rs192514502	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	5q15	MCTP1	rs192514502-T	0.999	4E-7	(AA)	2.597	NR unit increase	Illumina [NR] (imputed)	N
1304	chr5	94266931	94266932	rs72775397	34407845	Morra A	2021-08-18	Breast Cancer Res	Association of germline genetic variants with breast cancer-specific survival in patient subgroups defined by clinic-pathological variables related to tumor biology and type of systemic treatment.	5-year breast cancer-specific survival (treated with tamoxifen)	16,279 European ancestry individuals	NA	5q15		rs72775397-?	NR	2E-7		1.36	[1.21-1.53]	NR [10000000] (imputed)	N
1304	chr5	94273451	94273452	rs186049	29538362	Jilling T	2018-03-14	Pediatr Res	Surgical necrotizing enterocolitis in extremely premature neonates is associated with genetic variations in an intergenic region of chromosome eight.	Surgical necrotising enterocolitis in extremely premature birth	20 African American cases, 6 Hispanic Caucasian cases, 4 European ancestry cases,  283 African American controls, 130 Hispanic Caucasian controls, 133 European ancestry controls,	NA	5q15	NR	rs186049-?	NR	7E-6				Illumina [8270200] (imputed)	N
1305	chr5	94387871	94387872	rs17339969	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	5q15	NR	rs17339969-C	0.135	3E-6	(IFNalpha_STAT4_of_CD56brightCD16n)			Illumina [5084123] (imputed)	N
1305	chr5	94388469	94388470	rs7729095	28394258	Wild PS	2017-04-10	J Clin Invest	Large-scale genome-wide analysis identifies genetic variants associated with cardiac structure and function.	Isovolumetric relaxation time	21,852 European ancestry individuals	14,787 European ancestry individuals	5q15	MCTP1	rs7729095-G	0.8	9E-6		0.002	[0.0012-0.0028] unit decrease	Affymetrix, Illumina [at least 283291] (imputed)	N
1306	chr5	94519872	94519873	rs75927821	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	5q15	NR	rs75927821-?	NR	4E-6	(EA)	0.3466	[0.2-0.49] unit decrease	Illumina [up to 11892802] (imputed)	N
1306	chr5	94561732	94561733	rs79219208	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	5q15	NR	rs79219208-?	NR	8E-6		0.0076999	[0.0043-0.0111] unit increase	Affymetrix [805426] (imputed)	N
1307	chr5	94644439	94644440	rs13153882	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q15	NR	rs13153882-C	0.01045	3E-8	(FDXR)	0.03284	NR unit increase	Illumina [1671387] (imputed)	N
1307	chr5	94653872	94653873	rs255982	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	5q15	NR	rs255982-G	0.848905209260908	8E-6	(IGP31)	0.2077	[0.12-0.3] unit increase	Illumina [~ 2500000] (imputed)	N
1308	chr5	94775229	94775230	rs148693697	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Sweet beverage consumption	85,852 European ancestry individuals	39,924 European ancestry individuals	5q15	FAM81B	rs148693697-T	0.9779	3E-6		0.0305	[0.018-0.043] unit increase	Affymetrix [~ 7740000] (imputed)	N
1309	chr5	94958308	94958309	rs72781498	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Ischemic stroke (cardioembolic)	174 Indian ancestry cases, 2,154 Indian ancestry controls	NA	5q15		rs72781498-?	NR	7E-6		1.1475186	[1.08062281107601-1.21855564889364]	Illumina [up to 7827597] (imputed)	N
1309	chr5	94964967	94964968	rs115593965	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial squamous cell lung carcinoma	367 European ancestry cases, 31,563 European ancestry controls	NA	5q15	NR	rs115593965-T	0.005	6E-6		7.3	[3.08-17.31]	Illumina [7959153] (imputed)	N
1309	chr5	94983528	94983529	rs17790731	25944848	Athanasiu L	2015-05-05	J Psychopharmacol	Genome-wide association study identifies common variants associated with pharmacokinetics of psychotropic drugs.	Pharmacokinetics of antiepileptic drugs in severe mental disorder (concentration drug ratio)	Up to 185 European ancestry cases	NA	5q15	RFESD	rs17790731-A	0.034	2E-7		0.531	[NR] unit decrease	Affymetrix [686595]	N
1309	chr5	95017851	95017852	rs77881626	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5q15	RFESD	rs77881626-G	0.048	2E-25	(Rieske domain-containing protein, RFESD.13603.7.3)	0.6	[0.48-0.72] unit decrease	Affymetrix [10572788] (imputed)	N
1309	chr5	95025145	95025146	rs987068	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	5q15	SPATA9	rs987068-C	0.6889	1E-30		0.0296	[0.025-0.035] unit decrease	Affymetrix [19819130] (imputed)	N
1310	chr5	95030359	95030360	rs153909	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	5q15		rs153909-?	NR	5E-46				NR [~ 8900000] (imputed)	N
1310	chr5	95036699	95036700	rs153916	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	5q15	SPATA9	rs153916-T	0.55	6E-10		1.06	[1.04-1.08]	Affymetrix, Illumina [6224355] (imputed)	N
1310	chr5	95036699	95036700	rs153916	21946350	Soler Artigas M	2011-09-25	Nat Genet	Genome-wide association and large-scale follow up identifies 16 new loci influencing lung function.	Pulmonary function	48,201 European ancestry individuals	46,411 European ancestry individuals	5q15	SPATA9	rs153916-T	0.55	2E-8	(FEV1/FVC)	0.031	[0.021-0.041] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1310	chr5	95121534	95121535	rs17085064	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5q15	GLRX	rs17085064-?	NR	6E-6	(glutamate)	0.1610073	[0.091-0.231] unit increase	Affymetrix [at least 2500000] (imputed)	N
1310	chr5	95149815	95149816	rs8751	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	5q15	NR	rs8751-?	NR	1E-10				Affymetrix [NR]	N
1311	chr5	95162418	95162418	rs57675369	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	5q15	GLRX	rs57675369-AG	0.1283	9E-21		0.04966919	[0.039-0.06] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1311	chr5	95162474	95162475	rs10067881	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	5q15	GLRX	rs10067881-A	0.128393	4E-96		0.06998844	[0.063-0.077] unit decrease	Affymetrix [93095623] (imputed)	N
1311	chr5	95162474	95162475	rs10067881	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	5q15	GLRX	rs10067881-A	0.128408	9E-91		0.06798096	[0.061-0.075] unit decrease	Affymetrix [93095623] (imputed)	N
1311	chr5	95162474	95162475	rs10067881	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	5q15	GLRX	rs10067881-A	0.128408	2E-70		0.059802502	[0.053-0.066] unit decrease	Affymetrix [93095623] (imputed)	N
1311	chr5	95162474	95162475	rs10067881	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	5q15	GLRX	rs10067881-A	0.128442	9E-119		0.07749632	[0.071-0.084] unit decrease	Affymetrix [93095623] (imputed)	N
1311	chr5	95162474	95162475	rs10067881	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	5q15	GLRX	rs10067881-A	0.128457	4E-116		0.076623626	[0.07-0.083] unit decrease	Affymetrix [93095623] (imputed)	N
1311	chr5	95162474	95162475	rs10067881	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	5q15	GLRX	rs10067881-A	0.1283	1E-49		0.07948653	[0.069-0.09] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1311	chr5	95162474	95162475	rs10067881	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	5q15	GLRX	rs10067881-A	0.1282	5E-49		0.07895376	[0.068-0.089] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1311	chr5	95162474	95162475	rs10067881	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	5q15	GLRX	rs10067881-A	0.1283	6E-44		0.07450436	[0.064-0.085] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1311	chr5	95162474	95162475	rs10067881	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	5q15	GLRX	rs10067881-A	0.1283	1E-44		0.07505901	[0.065-0.086] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1311	chr5	95163436	95163437	rs17462893	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	5q15	GLRX	rs17462893-G	0.101359	2E-43		0.051599346	[0.044-0.059] unit increase	Affymetrix [93095623] (imputed)	N
1311	chr5	95163436	95163437	rs17462893	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	5q15	GLRX	rs17462893-G	0.101353	1E-38		0.04858195	[0.041-0.056] unit increase	Affymetrix [93095623] (imputed)	N
1311	chr5	95163436	95163437	rs17462893	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	5q15	GLRX	rs17462893-G	0.101323	3E-31		0.04355093	[0.036-0.051] unit increase	Affymetrix [93095623] (imputed)	N
1311	chr5	95163436	95163437	rs17462893	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	5q15	GLRX	rs17462893-G	0.101326	7E-54		0.057399277	[0.05-0.065] unit increase	Affymetrix [93095623] (imputed)	N
1311	chr5	95163436	95163437	rs17462893	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	5q15	GLRX	rs17462893-G	0.101321	1E-50		0.055596527	[0.048-0.063] unit increase	Affymetrix [93095623] (imputed)	N
1311	chr5	95163436	95163437	rs17462893	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	5q15	GLRX	rs17462893-G	0.1017	4E-31		0.06894116	[0.057-0.081] unit increase	Affymetrix [~ 2500000] (imputed)	N
1311	chr5	95163436	95163437	rs17462893	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	5q15	GLRX	rs17462893-G	0.1017	9E-31		0.06854185	[0.057-0.08] unit increase	Affymetrix [~ 2500000] (imputed)	N
1311	chr5	95163436	95163437	rs17462893	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	5q15	GLRX	rs17462893-G	0.1017	8E-12		0.04016075	[0.029-0.052] unit increase	Affymetrix [~ 2500000] (imputed)	N
1311	chr5	95163436	95163437	rs17462893	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	5q15	GLRX	rs17462893-G	0.1017	3E-27		0.06416802	[0.053-0.076] unit increase	Affymetrix [~ 2500000] (imputed)	N
1311	chr5	95163436	95163437	rs17462893	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	5q15	GLRX	rs17462893-G	0.1017	6E-28		0.06504534	[0.053-0.077] unit increase	Affymetrix [~ 2500000] (imputed)	N
1311	chr5	95166234	95166235	rs72785409	34014839	Page GP	2021-05-20	J Clin Invest	Multi-ancestry genome-wide association study identifies 27 loci associated with measures of hemolysis following blood storage.	hemolysis of donated blood (oxidative)	Up to 7,586 non-Hispanic White ancestry individuals, Up to 1,049 East Asian ancestry individuals, Up to 257 South Asian ancestry individuals, Up to 1,046 African Americans individuals, Up to 456 Mexican and Central American Hispanics individuals, Up to 489 Caribbean Island Hispanics, Up to 1,336 individuals	NA	5q15	GLRX	rs72785409-?	NR	1E-12		1.5	NR unit increase	NR [14100000] (imputed)	N
1311	chr5	95166234	95166235	rs72785409	34014839	Page GP	2021-05-20	J Clin Invest	Multi-ancestry genome-wide association study identifies 27 loci associated with measures of hemolysis following blood storage.	hemolysis of donated blood (oxidative)	Up to 7,586 non-Hispanic White ancestry individuals	NA	5q15	GLRX	rs72785409-?	NR	5E-8				NR [14100000] (imputed)	N
1311	chr5	95209556	95209557	rs154452	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	5q15	NR	rs154452-G	NR	2E-11		0.0202	[0.014-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
1311	chr5	95209556	95209557	rs154452	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	5q15	NR	rs154452-G	NR	9E-25		0.031	[0.025-0.037] unit decrease	Affymetrix [9000000] (imputed)	N
1311	chr5	95222276	95222277	rs11135441	28878392	Shen X	2017-09-06	Nat Commun	Multivariate discovery and replication of five novel loci associated with Immunoglobulin G N-glycosylation.	IgG sialylation phenotypes (multivariate analysis)	1,960 Orcadian (founder/genetic isolate) individuals	NA	5q15	ELL2	rs11135441-T	0.32	5E-10				Illumina [NR]	N
1311	chr5	95222276	95222277	rs11135441	28878392	Shen X	2017-09-06	Nat Commun	Multivariate discovery and replication of five novel loci associated with Immunoglobulin G N-glycosylation.	IgG digalactosylation phenotypes (multivariate analysis)	1,960 Orcadian (founder/genetic isolate) individuals	NA	5q15	ELL2	rs11135441-T	0.32	2E-9				Illumina [NR]	N
1311	chr5	95230765	95230766	rs74543823	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque score in type 2 diabetes	691 African American individuals	205 African American individuals	5q15	ELL2	rs74543823-?	NR	2E-6		1.306	[0.66-1.96] unit increase	Illumina [at least 13000000] (imputed)	N
1311	chr5	95232540	95232541	rs2546191	28112199	Law PJ	2017-01-23	Sci Rep	Genome-wide association analysis of chronic lymphocytic leukaemia, Hodgkin lymphoma and multiple myeloma identifies pleiotropic risk loci.	B-cell malignancies (chronic lymphocytic leukemia, Hodgkin lymphoma or multiple myeloma) (pleiotropy)	1,842 European ancestry chronic lymphocytic leukemia cases, 1,465 European ancestry Hodgkin lymphoma cases, 3,790 European ancestry multiple myeloma cases, 7,324 European ancestry controls	NA	5q15	ELL2	rs2546191-A	NR	4E-7				Illumina [10806625] (imputed)	N
1311	chr5	95234790	95234791	rs3777200	23022100	Franceschini N	2012-09-26	Am J Hum Genet	Discovery and fine mapping of serum protein loci through transethnic meta-analysis.	Serum total protein level	Up to 25,539 European ancestry individuals, 10,168 Japanese ancestry individuals	NA	5q15	ELL2	rs3777200-T	0.27	1E-8		0.0204	[0.013-0.027] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1311	chr5	95236458	95236459	rs3815768	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	IgA levels	16,883 Icelandic ancestry individuals	2,151 Swedish ancestry individuals	5q15	ELL2	rs3815768-T	0.293	4E-11		0.08	NR SD units increase	Illumina [21568490] (imputed)	N
1311	chr5	95241221	95241222	rs10069748	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	5q15	NR	rs10069748-C	0.274419212661614	5E-6	(IGP61)	0.1539	[0.088-0.22] unit decrease	Illumina [~ 2500000] (imputed)	N
1311	chr5	95242930	95242931	rs56219066	33875642	Duran-Lozano L	2021-04-19	Blood Cancer J	Germline variants at SOHLH2 influence multiple myeloma risk.	Multiple myeloma	4,376 European ancestry cases, 345,887 European ancestry controls	5,598 European ancestry cases, 15,261 European ancestry controls	5q15	ELL2	rs56219066-T	0.72	4E-8		1.15	[NR]	Illumina [33000000] (imputed)	N
1311	chr5	95242930	95242931	rs56219066	26007630	Swaminathan B	2015-05-26	Nat Commun	Variants in ELL2 influencing immunoglobulin levels associate with multiple myeloma.	Multiple myeloma and monoclonal gammopathy	2,194 European ancestry multiple myeloma cases, 251 European ancestry monoclonal gammopathy cases, 294,390 European ancestry controls	586 European ancestry multiple myeloma cases, 2,111 European ancestry controls	5q15	ELL2	rs56219066-T	0.711	2E-10		1.24	[1.16-1.33]	Illumina [12100000] (imputed)	N
1311	chr5	95242930	95242931	rs56219066	26007630	Swaminathan B	2015-05-26	Nat Commun	Variants in ELL2 influencing immunoglobulin levels associate with multiple myeloma.	Multiple myeloma	2,194 European ancestry cases, 222,555 European ancestry controls	586 European ancestry cases, 2,111 European ancestry controls	5q15	ELL2	rs56219066-T	0.711	1E-9		1.25	[1.16-1.34]	Illumina [12100000] (imputed)	N
1311	chr5	95246759	95246760	rs3777193	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	5q15	NR	rs3777193-G	0.71211365048976	4E-6	(IGP65)	0.1592	[0.092-0.227] unit increase	Illumina [~ 2500000] (imputed)	N
1311	chr5	95251237	95251238	rs6889029	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	5q15		rs6889029-A	NR	7E-32		0.0274	[0.023-0.032] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
1311	chr5	95253107	95253108	rs3777189	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Non-albumin protein levels	98,538 Japanese ancestry individuals	NA	5q15	ELL2	rs3777189-?	NR	7E-16		0.03965	[0.03-0.049] unit increase novel	Illumina [6108953] (imputed)	N
1311	chr5	95255723	95255724	rs1423269	27363682	Mitchell JS	2016-07-01	Nat Commun	Genome-wide association study identifies multiple susceptibility loci for multiple myeloma.	Multiple myeloma	7,319 European ancestry cases, 234,385 European ancestry controls	2,547 European ancestry cases, 4,803 European ancestry controls	5q15	NR	rs1423269-A		2E-11		1.17	[1.12-1.22]	Illumina [at least 7182761] (imputed)	N
1311	chr5	95262043	95262044	rs3777184	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Albumin-globulin ratio	98,626 Japanese ancestry individuals	NA	5q15	ELL2	rs3777184-?	NR	8E-14		0.03667	[0.027-0.046] unit decrease novel	Illumina [6108953] (imputed)	N
1311	chr5	95262512	95262513	rs11738945	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	5q15	NR	rs11738945-C	0.785892907349666	1E-6	(IGP32)	0.1818	[0.11-0.25] unit increase	Illumina [~ 2500000] (imputed)	N
1311	chr5	95266612	95266613	rs766972731	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	5q15	NR	rs766972731-D	0.203442	3E-11		0.01672	[0.012-0.022] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
1311	chr5	95266613	95266614	rs11320626	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	5q15		rs11320626-A	NR	1E-10		0.0152	[0.011-0.02] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
1311	chr5	95266613	95266614	rs11320626	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	5q15	ELL2	rs11320626-A	0.203432	3E-10		0.017496793	[0.012-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1311	chr5	95270391	95270392	rs115906455	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular hemoglobin	20,714 Amish, White ancestry individuals, 447 Asian ancestry individuals, 11,246 Black individuals, 13,834 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	5q15		rs115906455-A	NR	3E-9		0.43	[0.29-0.57] unit decrease	Illumina [94681438]	N
1311	chr5	95270391	95270392	rs115906455	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q15	NR	rs115906455-G	0.998312	3E-13				Affymetrix, Illumina [24246363] (imputed)	N
1311	chr5	95270391	95270392	rs115906455	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q15	NR	rs115906455-G	0.998497	5E-16				Affymetrix, Illumina [20825802] (imputed)	N
1311	chr5	95270391	95270392	rs115906455	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	11,974 African American or Afro-Caribbean and African ancestry individuals	NA	5q15	NR	rs115906455-G	0.958632	1E-9		0.202463	[0.14-0.27] SD units increase	Affymetrix, Illumina [36043646] (imputed)	N
1311	chr5	95273409	95273410	rs7700895	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	5q15	NR	rs7700895-T	0.783746748105216	1E-6	(IGP35)	0.1776	[0.11-0.25] unit decrease	Illumina [~ 2500000] (imputed)	N
1311	chr5	95276062	95276063	rs3756703	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	5q15		rs3756703-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1312	chr5	95301462	95301463	rs918629	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	5q15	NR	rs918629-G	0.745524385574354	1E-6	(IGP15)	0.1737	[0.1-0.24] unit increase	Illumina [~ 2500000] (imputed)	N
1312	chr5	95347785	95347786	rs6556898	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	133,321 East Asian ancestry individuals	NA	5q15		rs6556898-G	0.279935	9E-10		0.0256876	[0.017-0.034] unit increase	Illumina [13477433] (imputed)	N
1312	chr5	95407893	95407894	rs7717348	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	5q15	NR	rs7717348-?	NR	4E-10				Affymetrix [~ 8270000] (imputed)	N
1313	chr5	95425756	95425757	rs142324060	25987507	Minica CC	2015-05-19	Behav Genet	Heritability, SNP- and Gene-Based Analyses of Cannabis Use Initiation and Age at Onset.	Cannabis use (age at onset)	5,148 European ancestry users	NA	5q15	NR	rs142324060-G		8E-8		0.68	[0.46-0.9] unit increase	NR [5896100] (imputed)	N
1313	chr5	95428683	95428684	rs7734985	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	5q15	NR	rs7734985-G	0.336041271783296	2E-6	(IGP19)	0.1571	[0.093-0.221] unit decrease	Illumina [~ 2500000] (imputed)	N
1313	chr5	95486939	95486940	rs4869266	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	5q15	NR	rs4869266-G	0.664911823953174	3E-6	(IGP16)	0.1519	[0.088-0.216] unit increase	Illumina [~ 2500000] (imputed)	N
1313	chr5	95506085	95506086	rs12519062	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	5q15	NR	rs12519062-C	NR	5E-6		1.0869565	[NR]	Illumina [7158791] (imputed)	N
1313	chr5	95539447	95539448	rs4869272	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting glucose	73,089 European ancestry women	NA	5q15	PCSK1	rs4869272-C	0.323538	2E-13		0.022133	[0.016-0.028] unit decrease	Affymetrix, Illumina [8700000] (imputed)	N
1313	chr5	95539447	95539448	rs4869272	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting glucose	151,188 European ancestry individuals	NA	5q15	PCSK1	rs4869272-C	0.323538	2E-16		0.017425	[0.013-0.022] unit decrease	Affymetrix, Illumina [8700000] (imputed)	N
1313	chr5	95542725	95542726	rs13179048	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	5q15	NR	rs13179048-A	NR	2E-21		0.0257	[0.02-0.031] unit decrease	Affymetrix [9000000] (imputed)	N
1313	chr5	95542725	95542726	rs13179048	22581228	Manning AK	2012-05-13	Nat Genet	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting blood glucose (BMI interaction)	Up to 58,074 European ancestry individuals	Up tp 38,422 European ancestry individuals	5q15	PCSK1	rs13179048-A	0.312	2E-10		8.054E-4	[-0.00053-0.00214] unit increase	Affymetrix, Illumina [~ 2400000] (imputed)	N
1313	chr5	95542725	95542726	rs13179048	22581228	Manning AK	2012-05-13	Nat Genet	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting blood glucose	Up to 58,074 European ancestry individuals	Up tp 38,422 European ancestry individuals	5q15	PCSK1	rs13179048-A	0.3123	2E-9		0.02	[0.014-0.026] unit decrease	Affymetrix, Illumina [~ 2400000] (imputed)	N
1314	chr5	95553695	95553696	rs4305653	30185882	Zeiger AM	2018-09-05	Sci Rep	Genetic Determinants of Telomere Length in African American Youth.	Telomere length	492 African American children and adolescents	NA	5q15	TTC37	rs4305653-C	0.142	2E-6		0.167	[0.01-0.235] unit increase	Affymetrix [7519176] (imputed)	N
1314	chr5	95554015	95554016	rs11135450	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	5q15		rs11135450-G	0.67	5E-10				NR [NR] (imputed)	N
1314	chr5	95554015	95554016	rs11135450	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	5q15		rs11135450-G	0.67	2E-14		0.012	% increase	NR [NR] (imputed)	N
1314	chr5	95566561	95566562	rs55745974	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta minimum area	35,110 individuals	NA	5q15		rs55745974-A	0.635938	6E-51		0.105702	[0.092-0.12] increase	Affymetrix [NR]	N
1314	chr5	95566561	95566562	rs55745974	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta maximum area	31,908 individuals	NA	5q15		rs55745974-A	0.636454	3E-41		0.101405	[0.086-0.117] increase	Affymetrix [NR]	N
1314	chr5	95593461	95593462	rs6875585	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	5q15	LOC101929710	rs6875585-A	0.329136	7E-15		0.0153428	[0.011-0.019] unit decrease	NR [13737936] (imputed)	N
1314	chr5	95613006	95613007	rs3922468	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	5q15		rs3922468-?	NR	3E-15		0.0167826	[0.012-0.021] unit decrease	Affymetrix [20259828] (imputed)	N
1314	chr5	95625644	95625645	rs5869713	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	5q15		rs5869713-A	0.765309	2E-8		0.0241248	[0.016-0.033] unit increase	Illumina [13476299] (imputed)	N
1314	chr5	95630704	95630705	rs17085593	33842983	Chung RH	2021-04-12	Diabetologia	Multi-omics analysis identifies CpGs near G6PC2 mediating the effects of genetic variants on fasting glucose.	Fasting blood glucose	18,122 Han Chinese ancestry individuals	1,989 Han Chinese ancestry individuals	5q15	LOC101929710	rs17085593-G	0.33	6E-10		0.068	[0.046-0.09] unit decrease	Affymetrix [774398] (imputed)	N
1314	chr5	95639071	95639072	rs12517140	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	5q15	NR	rs12517140-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
1314	chr5	95646459	95646460	rs76480019	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	5q15	NR	rs76480019-?	NR	9E-10				Affymetrix [~ 8270000] (imputed)	N
1314	chr5	95649771	95649772	rs10063744	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	5q15		rs10063744-?	NR	4E-11				NR [~ 8900000] (imputed)	N
1314	chr5	95651352	95651353	rs4869281	30276832	Edwards AC	2018-10-01	Alcohol Clin Exp Res	Meta-Analysis of Genetic Influences on Initial Alcohol Sensitivity.	Initial alcohol sensitivity	6,039 European ancestry individuals, 892 African ancestry individuals, 408 American ancestry individuals	NA	5q15	CTD-2337A12.1	rs4869281-?	NR	7E-6				Affymetrix, Illumina [15642250] (imputed)	N
1314	chr5	95659055	95659056	rs10515235	31840077	Couto Alves A	2019-09-04	Sci Adv	GWAS on longitudinal growth traits reveals different genetic factors influencing infant, child, and adult BMI.	BMI at adiposity peak	6,219 European ancestry children	16,550 European ancestry children	5q15	PCSK1	rs10515235-A	0.21	2E-6		0.05	[0.03-0.07] unit increase	Affymetrix, Illumina [up to 2543888] (imputed)	N
1315	chr5	95696428	95696429	rs1820177	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	5q15	PCSK1	rs1820177-C	0.67859375	3E-331	(PCSK1, 13388_57_3)	0.9214984	[0.88-0.96] unit increase	Illumina [> 1000000] (imputed)	N
1315	chr5	95696584	95696585	rs1820176	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	200,622 European ancestry individuals	NA	5q15	PCSK1	rs1820176-T	0.7081	2E-34		0.0247	[0.021-0.029] unit increase	Affymetrix, Illumina [34064007] (imputed)	N
1315	chr5	95696584	95696585	rs1820176	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	19,247 Hispanic individuals	NA	5q15	PCSK1	rs1820176-T	0.7522	1E-6		0.0293	[0.017-0.041] unit increase	Affymetrix, Illumina [28177426] (imputed)	N
1315	chr5	95701542	95701543	rs271936	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	5q15		rs271936-?	NR	1E-13				NR [~ 8900000] (imputed)	N
1315	chr5	95704204	95704204	rs11392438	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	5q15		rs11392438-TA	NR	2E-12		0.0192	[0.014-0.024] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
1315	chr5	95711604	95711605	rs55838622	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	5q15	AC104123.1	rs55838622-A	0.754	1E-16		0.0181	[0.014-0.022] unit decrease	Affymetrix [18391927] (imputed)	N
1315	chr5	95711604	95711605	rs55838622	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		5q15	PCSK1	rs55838622-A	0.753648	2E-9		0.00989605	[0.0067-0.0131] unit decrease	Affymetrix [12370749]	N
1315	chr5	95716721	95716722	rs7713317	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body mass index and fasting glucose (pairwise)	380,336 European ancestry individuals, 16,962 East Asian, South Asian, Hispanic and African American ancestry individuals	NA	5q15	PCSK1	rs7713317-G	0.2783	1E-10				Affymetrix, Illumina [2331072] (imputed)	N
1315	chr5	95716721	95716722	rs7713317	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	5q15	NA	rs7713317-A	0.7198	2E-20		0.0166	[0.013-0.02] unit decrease	NR [~ 27400000] (imputed)	N
1315	chr5	95716721	95716722	rs7713317	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	5q15	NA	rs7713317-A	0.7198	2E-20		0.0166	[0.013-0.02] unit decrease	NR [~ 27400000] (imputed)	N
1315	chr5	95716721	95716722	rs7713317	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	5q15	NR	rs7713317-A	NR	4E-8		0.015	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
1315	chr5	95716721	95716722	rs7713317	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	5q15	ELL2, MIR583, CAST, ERAP2, ERAP1	rs7713317-A	0.707940926205902	4E-9		0.017830556	unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1315	chr5	95716721	95716722	rs7713317	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	5q15	PCSK1	rs7713317-G	0.29	6E-7	(EA)	0.017	[0.01-0.024] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1315	chr5	95716721	95716722	rs7713317	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	5q15	PCSK1	rs7713317-G	0.29	3E-7		0.017	[0.01-0.023] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1315	chr5	95718845	95718846	rs10476553	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	5q15		rs10476553-C	NR	2E-30		0.0316	[0.026-0.037] unit decrease	Affymetrix, Illumina [20535873] (imputed)	N
1315	chr5	95727878	95727879	rs34572181	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	5q15		rs34572181-G	NR	6E-12		0.0126	[0.0091-0.0161] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1315	chr5	95728897	95728898	rs6235	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	5q15	NR	rs6235-?	NR	9E-15				Affymetrix [~ 8270000] (imputed)	N
1315	chr5	95728897	95728898	rs6235	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	5q15		rs6235-?	NR	1E-15				NR [~ 8900000] (imputed)	N
1315	chr5	95728897	95728898	rs6235	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	5q15	NR	rs6235-?	NR	4E-6	(female)	0.12516	[0.072-0.178] unit increase	Affymetrix [7794483] (imputed)	N
1315	chr5	95728897	95728898	rs6235	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	5q15	NR	rs6235-?	NR	3E-8		0.13792	[0.089-0.187] unit increase	Affymetrix [7794483] (imputed)	N
1315	chr5	95728897	95728898	rs6235	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	5q15	NA	rs6235-C	0.7335	4E-20		0.0176	[0.014-0.021] unit decrease	NR [~ 27400000] (imputed)	N
1315	chr5	95728897	95728898	rs6235	23903356	Hayes MG	2013-07-31	Diabetes	Identification of HKDC1 and BACE2 as genes influencing glycemic traits during pregnancy through genome-wide association studies.	Glycemic traits (pregnancy)	1,367 European ancestry individuals, 817 Hispanic individuals, 1,075 Afro-Caribbean individuals, 1,178 Thai ancestry individuals	2,798 European ancestry individuals, 228 French Canadian founder population individuals	5q15	PCSK1	rs6235-G	0.272	5E-15	(FPG)	0.0056	[NR] unit decrease	Illumina [up to 945994] (imputed)	N
1315	chr5	95728897	95728898	rs6235	23263489	Huyghe JR	2012-12-23	Nat Genet	Exome array analysis identifies new loci and low-frequency variants influencing insulin processing and secretion.	Fasting blood proinsulin levels	up to 8,229 Finnish ancestry non-diabetic individuals	NA	5q15	PCSK1	rs6235-G	0.282	2E-8		0.031	[0.021-0.041] unit decrease	Illumina [242071]	N
1315	chr5	95728897	95728898	rs6235	21873549	Strawbridge RJ	2011-08-26	Diabetes	Genome-wide association identifies nine common variants associated with fasting proinsulin levels and provides new insights into the pathophysiology of type 2 diabetes.	Proinsulin levels	10,701 European ancestry individuals	16,378 European ancestry individuals	5q15	PCSK1	rs6235-G	0.28	1E-26				Affymetrix, Illumina [~ 2500000] (imputed)	N
1315	chr5	95728973	95728974	rs6234	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5q15		rs6234-?	NR	5E-20				NR [~ 8900000] (imputed)	N
1315	chr5	95728973	95728974	rs6234	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5q15	PCSK1	rs6234-C	0.26	1E-599	(Neuroendocrine convertase 1, PCSK1.13388.57.3)	1.1	[1.06-1.14] unit decrease	Affymetrix [10572788] (imputed)	N
1315	chr5	95728973	95728974	rs6234	29273807	Turcot V	2017-12-22	Nat Genet	Protein-altering variants associated with body mass index implicate pathways that control energy intake and expenditure in obesity.	Body mass index	up to 449,889 European ancestry individuals, up to 29,398 South Asian ancestry individuals, up to 27,610 African American individuals, up to 8,839 East Asian individuals, up to 10,772 Hispanic ancestry individuals	up to 196,766 European ancestry individuals	5q15	PCSK1, ERAP1	rs6234-C	0.2716	3E-17		0.0166	[0.013-0.021] unit increase	Illumina [246328]	N
1315	chr5	95728973	95728974	rs6234	25625282	Mahajan A	2015-01-27	PLoS Genet	Identification and functional characterization of G6PC2 coding variants influencing glycemic traits define an effector transcript at the G6PC2-ABCB11 locus.	Fasting blood glucose adjusted for BMI	up to 33,231 non-diabetic individuals	NA	5q15	PCSK1	rs6234-C	0.28	3E-8		0.022	[0.014-0.03] unit decrease	Illumina [106489]	N
1315	chr5	95729405	95729406	rs13169290	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glucose levels	114,870 European ancestry individuals	NA	5q15		rs13169290-G	0.729818	7E-9		0.0266412	[0.018-0.036] unit increase	NR [11722792] (imputed)	N
1315	chr5	95729405	95729406	rs13169290	32002517	Julienne H	2020-01-24	NAR Genom Bioinform	JASS: command line and web interface for the joint analysis of GWAS results.	Insulin-related traits (multivariate analysis)	62,205 individuals	NA	5q15	PCSK1	rs13169290-?	NR	8E-32				NR [3144808] (imputed)	N
1315	chr5	95748456	95748456	rs566921725	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5q15	NR	rs566921725-GTTTTT	0.287	2E-107	(Neuroendocrine convertase 1, PCSK1.13388.57.3)	0.62	[0.56-0.68] unit decrease	Affymetrix [10572788] (imputed)	N
1315	chr5	95774808	95774809	rs56092644	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CCK	5,366 Icelandic ancestry individuals	NA	5q15		rs56092644-T	0.2512	2E-12		0.154365	[0.11-0.2] unit increase	Illumina [7506463] (imputed)	N
1315	chr5	95795952	95795953	rs62364658	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	5q15	NR	rs62364658-?	NR	5E-9				Affymetrix [~ 8270000] (imputed)	N
1315	chr5	95799700	95799701	rs155960	31311600	Namjou B	2019-07-17	BMC Med	GWAS and enrichment analyses of non-alcoholic fatty liver disease identify new trait-associated genes and pathways across eMERGE Network.	Aspartate aminotransferase levels in non-alcoholic fatty liver disease	1,075 European ancestry individuals	NA	5q15	LOC101929710	rs155960-A	0.468343	4E-6		0.179932	[0.1-0.26] unit decrease	NR [7263501] (imputed)	N
1316	chr5	95840230	95840231	rs72774885	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	5q15	NR	rs72774885-C	0.16578800000000005	4E-10		0.0268849	[0.019-0.035] unit increase	Affymetrix [16577424] (imputed)	N
1316	chr5	95845853	95845854	rs17086188	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	5q15	PCSK1	rs17086188-A	0.94	4E-8		0.07	[0.045-0.095] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
1316	chr5	95848502	95848503	rs6556925	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	5q15	PCSK1	rs6556925-C	0.416	3E-9		1.04	[1.03-1.05]	Affymetrix, Illumina [11800000] (imputed)	N
1316	chr5	95850249	95850250	rs261967	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	5q15		rs261967-C	NR	2E-9		0.038	[0.026-0.05] unit increase	Affymetrix, Illumina [25845091] (imputed)	N
1316	chr5	95850249	95850250	rs261967	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	5q15	NR	rs261967-C	0.414	8E-10		0.0235	[0.016-0.031] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1316	chr5	95850249	95850250	rs261967	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	5q15	NR	rs261967-C	0.397188	4E-8		0.0379946	[0.024-0.052] unit increase	Affymetrix [17914406] (imputed)	N
1316	chr5	95850249	95850250	rs261967	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	5q15	NR	rs261967-A	NR	1E-9		0.017	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
1316	chr5	95850249	95850250	rs261967	24861553	Wen W	2014-05-26	Hum Mol Genet	Meta-analysis of genome-wide association studies in East Asian-ancestry populations identifies four new loci for body mass index.	Body mass index	82,438 East Asian ancestry individuals, 4,301 South East Asian ancestry individuals	Up to 47,352 East Asian ancestry individuals	5q15	PCSK1	rs261967-C	0.41	8E-13		0.0376	[0.027-0.048] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1316	chr5	95850249	95850250	rs261967	22344219	Wen W	2012-02-19	Nat Genet	Meta-analysis identifies common variants associated with body mass index in east Asians.	Body mass index	22,762 East Asian ancestry individuals, 2,522 Malay ancestry individuals, 2,431 Chinese, Malay and Asian Indian ancestry individuals	53,215 East Asian ancestry results, 2,118 Malay ancestry individuals	5q15	PCSK1	rs261967-C	0.41	5E-9		3.77	[2.26-5.28] % increase	Affymetrix, Illumina [2474474] (imputed)	N
1316	chr5	95851692	95851693	rs17395416	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	5q15	NR	rs17395416-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
1316	chr5	95855575	95855576	rs2611732	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	5q15		rs2611732-G	0.393968	1E-21		0.0264366	[0.021-0.032] unit increase	Illumina [13479924] (imputed)	N
1316	chr5	95856500	95856501	rs2611742	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	5q15		rs2611742-C	NR	8E-28		0.0184	[0.015-0.022] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1316	chr5	95856500	95856501	rs2611742	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	5q15		rs2611742-C	NR	7E-30		0.0218	[0.018-0.026] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1316	chr5	95856500	95856501	rs2611742	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	163,835 East Asian ancestry individuals	NA	5q15		rs2611742-C	0.393697	1E-27		0.0354701	[0.029-0.042] unit increase	Illumina [13479178] (imputed)	N
1316	chr5	95856500	95856501	rs2611742	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	5q15		rs2611742-?	NR	2E-12				NR [~ 8900000] (imputed)	N
1316	chr5	95856678	95856679	rs2570467	23966867	Liu CT	2013-08-15	PLoS Genet	Genome-wide association of body fat distribution in African ancestry populations suggests new loci.	Waist circumference	Up to 23,564 African American individuals	Up to 10,027 African American individuals	5q15	PCSK1	rs2570467-A	0.86	1E-6	(men)	0.1	[0.061-0.139] unit decrease	Affymetrix, Illumina [3200000] (imputed)	N
1316	chr5	95858667	95858668	rs4869139	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	5q15	LOC101929710	rs4869139-A	0.38	8E-24		0.024	[0.02-0.028] unit decrease	Illumina [6108953] (imputed)	N
1316	chr5	95859143	95859144	rs1837269	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	5q15	NR	rs1837269-?	NR	1E-11				Affymetrix [~ 8270000] (imputed)	N
1316	chr5	95861011	95861012	rs11951673	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	5q15	NA	rs11951673-T	0.396	6E-14		0.0123	[0.0092-0.0154] unit decrease	NR [~ 27400000] (imputed)	N
1316	chr5	95861011	95861012	rs11951673	29381148	Gong J	2017-12-21	Int J Obes (Lond)	Trans-ethnic analysis of metabochip data identifies two new loci associated with BMI.	Body mass index	35,606 African American individuals, 26,048 Hispanic/Latino individuals, 22,466 Asian or Native Hawaiian ancestry individuals, 17,859 European ancestry individuals, 535 Native American individuals	NA	5q15	CAST	rs11951673-A		2E-9		0.0051	unit decrease	Illumina [at least 200000]	N
1316	chr5	95867907	95867908	rs10062657	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	5q15	PCSK1	rs10062657-A	0.594	4E-25	(Japanese)	0.038	[0.03-0.046] unit decrease	Illumina [6108953] (imputed)	N
1316	chr5	95871369	95871370	rs112530420	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	5q15	NR	rs112530420-C	0.16612400000000005	2E-8		0.0102601	[0.0068-0.0137] unit increase	Affymetrix [16578495] (imputed)	N
1316	chr5	95871369	95871370	rs112530420	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	5q15	NR	rs112530420-C	0.16587600000000002	5E-10		0.0257234	[0.018-0.034] unit increase	Affymetrix [16577313] (imputed)	N
1316	chr5	95883543	95883544	rs6870152	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fish- and plant-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	5q15	CAST	rs6870152-?	NR	4E-8		0.0138461	[0.0089-0.0188] unit increase	Affymetrix [25921788] (imputed)	N
1316	chr5	95883846	95883847	rs10055259	30185882	Zeiger AM	2018-09-05	Sci Rep	Genetic Determinants of Telomere Length in African American Youth.	Telomere length	492 African American children and adolescents	NA	5q15	ELL2	rs10055259-A	0.073	7E-7		0.193	[0.118-0.268] unit decrease	Affymetrix [7519176] (imputed)	N
1316	chr5	95897834	95897835	rs261996	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Major depressive disorder x sex interaction	15,970 European ancestry cases, 24,984 European ancestry controls	NA	5q15	LOC101929710	rs261996-A	0.5874	6E-6		0.1727	[0.098-0.247] unit decrease	NR [NR] (imputed)	N
1316	chr5	95901045	95901046	rs261223	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	5q15	CAST	rs261223-A	0.6298	2E-19		0.0175	[0.014-0.021] unit decrease	Affymetrix [18391927] (imputed)	N
1317	chr5	95985281	95985282	rs6556937	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	5q15	CAST	rs6556937-T	0.1484848	8E-15	(EA, Endoplasmic reticulum aminopeptidase 1)	0.4792	[0.36-0.6] unit increase	Affymetrix [509946]	N
1317	chr5	95993275	95993276	rs188361214	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	5q15	NR	rs188361214-?	NR	6E-6		1.36721	[0.77-1.96] unit increase	NR [13958389] (imputed)	N
1317	chr5	95997284	95997285	rs4590196	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q15	NR	rs4590196-T	0.2962	4E-9	(ERAP1)	0.004187	NR unit increase	Illumina [1671387] (imputed)	N
1317	chr5	96033869	96033870	rs62364719	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein COL4A3BP	5,357 Icelandic ancestry individuals	NA	5q15		rs62364719-T	0.3411	3E-12		0.126296	[0.091-0.162] unit increase	Illumina [7506463] (imputed)	N
1317	chr5	96036310	96036311	rs72772090	28090653	Liu Y	2017-01-16	Clin Pharmacol Ther	Genome-Wide Study Links PNPLA3 Variant With Elevated Hepatic Transaminase After Acute Lymphoblastic Leukemia Therapy.	Alanine aminotransferase (ALT) levels after remission induction therapy in actute lymphoblastic leukemia (ALL)	up to 488 European ancestry cases, up to 111 African American cases, up to 60 Hispanic cases, up to 56 other ancestry cases	NA	5q15	CAST	rs72772090-G		4E-7	(AA)	5.263158	[1.3-20]	Affymetrix, Illumina [NR] (imputed)	N
1317	chr5	96038814	96038815	rs75092723	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip and palate	121 Asian ancestry cases, 159 European ancestry cases, 285 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	5q15	NR	rs75092723-?	NR	4E-6		1.94	[1.74-2.17]	Illumina [539000] (imputed)	N
1317	chr5	96056358	96056359	rs10515243	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CAPN1;CAPNS1	5,358 Icelandic ancestry individuals	NA	5q15		rs10515243-G	0.3175	1E-12		0.135022	[0.098-0.172] unit increase	Illumina [7506463] (imputed)	N
1317	chr5	96057881	96057882	rs151830	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	5q15		rs151830-A	NR	1E-9		0.0122	[0.0083-0.0161] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1317	chr5	96070204	96070205	rs149313	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	5q15	CAST	rs149313-T	0.4708543	4E-33	(Endoplasmic reticulum aminopeptidase 1)	0.5227	[0.44-0.61] unit increase	Affymetrix [509946]	N
1317	chr5	96070981	96070982	rs151835	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q15	NR	rs151835-A	0.284	2E-9	(ERAP1)	0.004222	NR unit increase	Illumina [1671387] (imputed)	N
1318	chr5	96080882	96080883	rs3822683	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	5q15	NR	rs3822683-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
1318	chr5	96080882	96080883	rs3822683	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	5q15		rs3822683-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1318	chr5	96080882	96080883	rs3822683	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	5q15	NA	rs3822683-A	0.7851	1E-10		0.0131	[0.0092-0.017] unit increase	NR [~ 27400000] (imputed)	N
1318	chr5	96084775	96084776	rs10037212	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Iritis	2,616 European ancestry cases, 478,126 European ancestry controls, 110 East Asian ancestry cases, 175,543 East Asian ancestry controls	NA	5q15		rs10037212-A	NR	3E-9		0.183	[0.12-0.24] unit decrease	Affymetrix, Illumina [25844196] (imputed)	N
1318	chr5	96086333	96086334	rs754615	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q15	NR	rs754615-C	0.3885	2E-8	(ERAP1)	0.00368	NR unit decrease	Illumina [1671387] (imputed)	N
1318	chr5	96086689	96086690	rs1862609	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q15	NR	rs1862609-A	0.3066	7E-11	(ERAP1)	0.004624	NR unit decrease	Illumina [1671387] (imputed)	N
1318	chr5	96092989	96092990	rs28081	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	5q15	CAST	rs28081-A	0.150332	6E-10		0.05214078	[0.036-0.069] unit decrease	Affymetrix [7288503] (imputed)	N
1318	chr5	96094693	96094694	rs27037	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q15	NR	rs27037-T	0.2892	7E-13	(ERAP1)	0.004948	NR unit increase	Illumina [1671387] (imputed)	N
1318	chr5	96099957	96099958	rs26502	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q15	NR	rs26502-T	0.4652	4E-10	(ERAP1)	0.004045	NR unit decrease	Illumina [1671387] (imputed)	N
1318	chr5	96101219	96101220	rs28580505	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Uveitis	2,616 European ancestry cases, 478,126 European ancestry controls, 125 East Asian ancestry cases, 174,600 East Asian ancestry controls	NA	5q15		rs28580505-G	NR	4E-9		0.1813	[0.12-0.24] unit decrease	Affymetrix, Illumina [25844095] (imputed)	N
1318	chr5	96101943	96101944	rs27524	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q15	NR	rs27524-A	0.3624	2E-12	(ERAP1)	0.004594	NR unit increase	Illumina [1671387] (imputed)	N
1318	chr5	96101943	96101944	rs27524	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Psoriasis	4,212 European ancestry cases, 8,032 European ancestry controls	NA	5q15	ERAP1	rs27524-A	NR	2E-8		1.195	[1.157-1.234]	Affymetrix, Illumina, Perlegen [up to 5493100] (imputed)	N
1318	chr5	96101943	96101944	rs27524	22286212	Urayama KY	2012-01-27	J Natl Cancer Inst	Genome-wide association study of classical Hodgkin lymphoma and Epstein-Barr virus status-defined subgroups.	Hodgkin's lymphoma	1,200 European ancestry cases, 6,417 European ancestry controls	563 European ancestry cases, 613 European ancestry controls	5q15	ERAP1	rs27524-?	NR	7E-6	(Total cHL)	1.22	[1.11-1.33]	Illumina [502514]	N
1318	chr5	96101943	96101944	rs27524	20953190	Strange A	2010-10-17	Nat Genet	A genome-wide association study identifies new psoriasis susceptibility loci and an interaction between HLA-C and ERAP1.	Psoriasis	2,178 European ancestry cases, 5,175 European ancestry controls	3,174 European ancestry cases, 5,464 European ancestry controls	5q15	ERAP1	rs27524-A	0.36	3E-11		1.13	[1.05-1.22]	Illumina [535475]	N
1318	chr5	96106898	96106899	rs27033	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5q15	NR	rs27033-A	0.598	2E-14	(Endoplasmic reticulum aminopeptidase 1, ERAP1.4964.67.1)	0.19	[0.13-0.25] unit decrease	Affymetrix [10572788] (imputed)	N
1318	chr5	96111239	96111240	rs399005	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q15	NR	rs399005-T	0.1951	9E-19	(ERAP1)	0.007087	NR unit increase	Illumina [1671387] (imputed)	N
1318	chr5	96111370	96111371	rs13160562	19581569	Treutlein J	2009-07-01	Arch Gen Psychiatry	Genome-wide association study of alcohol dependence.	Alcohol dependence	476 European ancestry cases, 1,358 European ancestry controls	1,024 European ancestry cases, 996 European ancestry controls	5q15	CAST, ERAP1	rs13160562-G	0.68	7E-6		1.27	[1.14-1.41]	Illumina [524396]	N
1318	chr5	96112082	96112083	rs1065407	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q15	NR	rs1065407-G	0.3206	3E-8	(ERAP1)	0.003827	NR unit decrease	Illumina [1671387] (imputed)	N
1318	chr5	96115720	96115721	rs27041	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls	NA	5q15	ERAP1	rs27041-C	0.148646	3E-9		0.06707112	[0.045-0.089] unit decrease	Affymetrix [7288503] (imputed)	N
1318	chr5	96118851	96118852	rs27044	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	5q15		rs27044-C	0.7232	2E-12		0.11016527	[0.08-0.141] mmHg increase	Affymetrix, Illumina [242866] (imputed)	N
1318	chr5	96118851	96118852	rs27044	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q15	NR	rs27044-G	0.2857	6E-16	(ERAP1)	0.005534	NR unit increase	Illumina [1671387] (imputed)	N
1318	chr5	96118851	96118852	rs27044	25854761	Zuo X	2015-04-09	Nat Commun	Whole-exome SNP array identifies 15 new susceptibility loci for psoriasis.	Psoriasis	11,245 Han Chinese ancestry cases, 11,177 Han Chinese ancestry controls	6,369 Han Chinese ancestry cases, 13,969 Han Chinese ancestry controls	5q15	ERAP1	rs27044-G	NR	8E-21	(fixed)	1.1432492		Illumina [87827]	N
1318	chr5	96118865	96118866	rs17482078	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5q15	ERAP1	rs17482078-T	0.216	1E-321	(Endoplasmic reticulum aminopeptidase 1, ERAP1.4964.67.1)	0.96	[0.9-1.02] unit decrease	Affymetrix [10572788] (imputed)	N
1318	chr5	96118865	96118866	rs17482078	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	5q15	ERAP1, CTD-2260A17.1, CAST, AC008906.1, CTD-2260A17.3, CTD-2260A17.2	rs17482078-T	0.1883182	3E-115	(Endoplasmic reticulum aminopeptidase 1)	1.142	[1.06-1.23] unit decrease	Affymetrix [509946]	N
1318	chr5	96118865	96118866	rs17482078	23291587	Kirino Y	2013-01-06	Nat Genet	Genome-wide association analysis identifies new susceptibility loci for Behcet's disease and epistasis between HLA-B*51 and ERAP1.	Behcet's disease	435 Turkish uveitis cases, 780 Turkish without uveitis cases, 1,278 Turkish controls	355 Turkish uveitis cases, 483 Turkish without uveitis cases, 601 Turkish controls, up to 612 Japanese ancestry cases, up to 740 Japanese ancestry controls	5q15	ERAP1	rs17482078-T	0.02	5E-11	(Turkish cases with Uveitis - Recessive Model)	4.56	[2.88-7.22]	Illumina [779465] (imputed)	N
1318	chr5	96118865	96118866	rs17482078	23291587	Kirino Y	2013-01-06	Nat Genet	Genome-wide association analysis identifies new susceptibility loci for Behcet's disease and epistasis between HLA-B*51 and ERAP1.	Behcet's disease	435 Turkish uveitis cases, 780 Turkish without uveitis cases, 1,278 Turkish controls	355 Turkish uveitis cases, 483 Turkish without uveitis cases, 601 Turkish controls, up to 612 Japanese ancestry cases, up to 740 Japanese ancestry controls	5q15	ERAP1	rs17482078-T	0.02	4E-8	(All Turkish cases - Recessive Model)	3.08	[2.04-4.65]	Illumina [779465] (imputed)	N
1318	chr5	96119272	96119273	rs27432	26626624	Stuart PE	2015-11-28	Am J Hum Genet	Genome-wide Association Analysis of Psoriatic Arthritis and Cutaneous Psoriasis Reveals Differences in Their Genetic Architecture.	Psoriasis vulgaris	4,007 European ancestry cases, 4,934 European ancestry controls	up to 9,075 European ancestry cases, up to European ancestry 12,726 controls	5q15	ERAP1	rs27432-A	NR	1E-7		1.133	NR	Illumina [up to 11532644] (imputed)	N
1318	chr5	96119272	96119273	rs27432	23143594	Tsoi LC	2012-12-01	Nat Genet	Identification of 15 new psoriasis susceptibility loci highlights the role of innate immunity.	Psoriasis	10,588 European ancestry cases, 22,806 European ancestry controls	NA	5q15	ERAP1	rs27432-A	0.274	2E-20		1.2		Illumina [111236] (imputed)	N
1318	chr5	96119338	96119339	rs2124921	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q15	NR	rs2124921-T	0.2108	9E-13	(ERAP1)	0.005443	NR unit decrease	Illumina [1671387] (imputed)	N
1318	chr5	96119578	96119579	rs200814357	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q15	NR	rs200814357-A	0.1882	1E-21	(ERAP1)	0.007522	NR unit increase	Illumina [1671387] (imputed)	N
1318	chr5	96120053	96120054	rs39840	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	5q15		rs39840-C	NR	1E-9		0.0365	[0.025-0.048] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1318	chr5	96120169	96120170	rs39841	33385400	Patrick MT	2020-12-29	J Invest Dermatol	Causal relationship and shared genetic loci between psoriasis and type 2 diabetes through trans-disease meta-analysis.	Psoriasis or type 2 diabetes (trans-disease meta-analysis)	11,024 European ancestry psoriasis cases, 74,124 European ancestry diabetes cases, 840,342 European ancestry controls	NA		NR	rs39841-G	NR	2E-11		1.08	NR	NR [8016731] (imputed)	N
1318	chr5	96120169	96120170	rs39841	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Inflammatory skin disease	2,079 European ancestry atopic dermatitis cases, 4,212 European ancestry psoriasis cases, 11,899 European ancestry controls	NA		ERAP1	rs39841-?	NR	1E-9	(Psoriasis)			Affymetrix, Illumina [~ 5200000]	N
1318	chr5	96120454	96120455	rs42398	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	5q15	ERAP1	rs42398-T	0.8279	5E-10		0.2195	[0.15-0.29] mmHg increase	Affymetrix [NR] (imputed)	N
1318	chr5	96121146	96121147	rs12517853	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ERAP1	5,367 Icelandic ancestry individuals	NA	5q15		rs12517853-A	0.08168	6E-297		1.15987	[1.1-1.22] unit increase	Illumina [7506463] (imputed)	N
1318	chr5	96121151	96121152	rs2032890	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q15	NR	rs2032890-C	0.2927	6E-12	(ERAP1)	0.004749	NR unit decrease	Illumina [1671387] (imputed)	N
1318	chr5	96121151	96121152	rs2032890	25200001	Robinson PC	2014-09-08	Arthritis Rheumatol	Genetic dissection of acute anterior uveitis reveals similarities and differences in associations observed with ankylosing spondylitis.	Acute anterior uveitis in ankylosing spondylitis	1,199 European ancestry cases, 1,731 European ancestry controls	NR	5q15	ERAP1	rs2032890-A	0.78	9E-6		1.34	[1.18 - 1.52]	Illumina [at least 106525] (imputed)	N
1318	chr5	96121151	96121152	rs2032890	25200001	Robinson PC	2014-09-08	Arthritis Rheumatol	Genetic dissection of acute anterior uveitis reveals similarities and differences in associations observed with ankylosing spondylitis.	Acute anterior uveitis (with or without ankylosing spondylitis)	238 European ancestry primary acute anterior uveitis cases, 1,199 European ancestry cases with acute anterior uveitis and ankylosing spondylitis, 9,564 European ancestry controls	NR	5q15	ERAP1, ERAP2, LNPEP	rs2032890-A	0.77	2E-16		1.51	[1.37-1.66]	Illumina [at least 106525] (imputed)	N
1318	chr5	96121183	96121184	rs13185488	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	5q15	CTD-2260A17.1	rs13185488-A	0.22838	1E-10		0.017291123	[0.012-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1318	chr5	96121183	96121184	rs13185488	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	5q15	CTD-2260A17.1	rs13185488-A	0.228327	2E-12		0.018881835	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1318	chr5	96121183	96121184	rs13185488	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	5q15	NR	rs13185488-A	0.224696	7E-20		0.019956	[0.016-0.024] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1318	chr5	96121714	96121715	rs469758	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	5q15	ERAP1	rs469758-?	NR	6E-54	(subset analysis)			Illumina [130052]	N
1318	chr5	96122280	96122281	rs30380	28031287	Sasayama D	2016-11-26	Hum Mol Genet	Genome-wide quantitative trait loci mapping of the human cerebrospinal fluid proteome.	Cerebrospinal fluid biomarker levels	133 Japanese ancestry individuals.	NA	5q15	NR	rs30380-?	NR	7E-22	(Endoplasmic reticulum aminopeptidase 1)			Illumina [514227]	N
1318	chr5	96122457	96122458	rs13154629	32492067	Ruffieux H	2020-06-03	PLoS Comput Biol	A fully joint Bayesian quantitative trait locus mapping of human protein abundance in plasma.	Protein quantitative trait loci	394 European ancestry individuals	548 European ancestry individuals	5q15	NR	rs13154629-?	NR	7E-70	(ARTS1)			Illumina [~ 4000000] (imputed)	N
1318	chr5	96123528	96123528	rs397964890	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5q15	NR	rs397964890-CAT	0.506	5E-146	(Endoplasmic reticulum aminopeptidase 1, ERAP1.4964.67.1)	0.64	[0.58-0.7] unit decrease	Affymetrix [10572788] (imputed)	N
1318	chr5	96123665	96123666	rs151964	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q15	NR	rs151964-G	0.3484	2E-18	(ERAP1)	0.005603	NR unit increase	Illumina [1671387] (imputed)	N
1318	chr5	96124329	96124330	rs30187	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	5q15	NR	rs30187-T	0.337481	2E-11		0.013528	[0.0096-0.0175] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
1318	chr5	96124329	96124330	rs30187	23749187	Cortes A	2013-07-01	Nat Genet	Identification of multiple risk variants for ankylosing spondylitis through high-density genotyping of immune-related loci.	Ankylosing spondylitis	9,069 European ancestry cases, 1,550 East Asian ancestry cases, 13,578 European ancestry controls, 1,567 East Asian ancestry controls	NA	5q15	ERAP1	rs30187-T	0.338	4E-45		1.29		Illumina [128935]	N
1318	chr5	96124329	96124330	rs30187	23749187	Cortes A	2013-07-01	Nat Genet	Identification of multiple risk variants for ankylosing spondylitis through high-density genotyping of immune-related loci.	Ankylosing spondylitis	9,069 European ancestry cases, 1,550 East Asian ancestry cases, 13,578 European ancestry controls, 1,567 East Asian ancestry controls	NA	5q15	ERAP1	rs30187-T	0.338	1E-41	(EA)	1.32		Illumina [128935]	N
1318	chr5	96124329	96124330	rs30187	21743469	Evans DM	2011-07-10	Nat Genet	Interaction between ERAP1 and HLA-B27 in ankylosing spondylitis implicates peptide handling in the mechanism for HLA-B27 in disease susceptibility.	Ankylosing spondylitis	3,023 European ancestry cases, 8,779 European ancestry controls	2,111 European ancestry cases, 4,483 European ancestry controls	5q15	ERAP1	rs30187-T	0.33	2E-27				Illumina [2223620] (imputed)	N
1318	chr5	96124929	96124930	rs113365723	31085060	Gisbert L	2019-05-10	Eur Neuropsychopharmacol	Genome-wide analysis of emotional lability in adult attention deficit hyperactivity disorder (ADHD).	Emotional lability in attention deficit hyperactivity disorder	563 European ancestry individuals	NA	5q15	ERAP1	rs113365723-A	NR	9E-6		5.61	[2.62-12.00]	Illumina [2777520] (imputed)	N
1318	chr5	96126307	96126308	rs27529	32492107	Huang XF	2020-06-01	Invest Ophthalmol Vis Sci	Genomewide Association Study of Acute Anterior Uveitis Identifies New Susceptibility Loci.	Acute anterior uveitis in ankylosing spondylitis	2,752 European ancestry cases, 3,836 European ancestry controls	NA	5q15	ERAP1	rs27529-A	NR	2E-7		1.22	[1.13-1.31]	Illumina [7436415] (imputed)	N
1318	chr5	96126307	96126308	rs27529	30946743	Li Z	2019-04-04	PLoS Genet	Genome-wide association study in Turkish and Iranian populations identify rare familial Mediterranean fever gene (MEFV) polymorphisms associated with ankylosing spondylitis.	Ankylosing spondylitis	921 Turkish ancestry cases, 907 Turkish ancestry controls, 422 Iranian ancestry cases, 754 Iranian ancestry controls	NA	5q15	ERAP1	rs27529-A	NR	1E-9		1.39	[1.22-1.59]	Illumina [up to 294091]	N
1318	chr5	96127904	96127905	rs27640	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q15	NR	rs27640-T	0.2526	7E-22	(ERAP1)	0.006877	NR unit increase	Illumina [1671387] (imputed)	N
1318	chr5	96129511	96129512	rs27434	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Hypertension	810,865 European ancestry individuals	354,096 European ancestry individuals	5q15		rs27434-A	0.2135	1E-8		5.68059	z score decrease	Affymetrix, Illumina [239843] (imputed)	N
1318	chr5	96129511	96129512	rs27434	20062062	Reveille JD	2010-01-10	Nat Genet	Genome-wide association study of ankylosing spondylitis identifies non-MHC susceptibility loci.	Ankylosing spondylitis	2,053 European ancestry cases, 5,140 European ancestry controls	898 European ancestry cases, 1,518 European ancestry controls	5q15	ERAP1	rs27434-A	0.23	5E-12		1.19	[1.10-1.30]	Illumina [288662]	N
1318	chr5	96129872	96129872	rs202110856	25990418	Al-Tassan NA	2015-05-20	Sci Rep	A new GWAS and meta-analysis with 1000Genomes imputation identifies novel risk variants for colorectal cancer.	Colorectal cancer	7,577 European ancestry cases, 9,979 European ancestry controls	NA	5q15	ERAP1	rs202110856-?	0.99	7E-8		1.51	[1.23-1.86]	Affymetrix, Illumina [~ 10000000] (imputed)	N
1318	chr5	96130013	96130014	rs469735	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5q15	NR	rs469735-C	0.791	6E-308	(Endoplasmic reticulum aminopeptidase 1, ERAP1.4964.67.1)	0.95	[0.89-1.01] unit decrease	Affymetrix [10572788] (imputed)	N
1318	chr5	96134174	96134175	rs2013717	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	5q15	ERAP1	rs2013717-T	0.77140625	1E-375	(ERAP1, 4964_67_1)	1.0937254	[1.05-1.14] unit increase	Illumina [> 1000000] (imputed)	N
1318	chr5	96134282	96134283	rs2013671	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q15	NR	rs2013671-C	0.17908	2E-17				Affymetrix, Illumina [24588908] (imputed)	N
1318	chr5	96137881	96137882	rs26496	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	5q15	ERAP1, CTD-2260A17.1, CTD-2260A17.3, AC008906.1, CTD-2260A17.2	rs26496-A	0.2039275	6E-123	(Endoplasmic reticulum aminopeptidase 1)	1.13	[1.05-1.21] unit increase	Affymetrix [509946]	N
1318	chr5	96139249	96139250	rs26653	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	5q15		rs26653-C	0.2806	2E-11		0.17917956	[0.13-0.23] mmHg decrease	Affymetrix, Illumina [242865] (imputed)	N
1318	chr5	96139249	96139250	rs26653	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Hypertension	810,865 European ancestry individuals, 21,077 African American individuals, 33,689 South Asian ancestry individuals, 4,586 Hispanic individuals	354,096 European ancestry individuals, 63,282 African American individuals, 4,792 East Asian ancestry individuals, 22,802 Hispanic individuals, 2,695 Native American ancestry individuals	5q15		rs26653-C	0.2992	1E-9		6.05725	z score decrease	Affymetrix, Illumina [246710] (imputed)	N
1318	chr5	96142691	96142691	rs372765819	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q15	NR	rs372765819-T	0.3415	4E-18	(ERAP1)	0.005594	NR unit increase	Illumina [1671387] (imputed)	N
1318	chr5	96147732	96147733	rs10045403	30850646	Tziotzios C	2019-03-08	Nat Commun	Genome-wide association study in frontal fibrosing alopecia identifies four susceptibility loci including HLA-B*07:02.	Frontal fibrosing alopecia	1,016 European ancestry cases, 4,145 European ancestry controls		5q15	NR	rs10045403-G	0.266	4E-7		1.33	[1.19-1.48]	Illumina [~ 8000000] (imputed)	N
1318	chr5	96147732	96147733	rs10045403	23749187	Cortes A	2013-07-01	Nat Genet	Identification of multiple risk variants for ankylosing spondylitis through high-density genotyping of immune-related loci.	Ankylosing spondylitis	9,069 European ancestry cases, 1,550 East Asian ancestry cases, 13,578 European ancestry controls, 1,567 East Asian ancestry controls	NA	5q15	ERAP2, ERAP1, LNPEP	rs10045403-A	0.73	6E-14	(conditioned on rs30187 & rs2910686, EA)	1.2		Illumina [128935]	N
1318	chr5	96156493	96156494	rs151908	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q15	NR	rs151908-A	0.331	4E-16	(ERAP1)	0.005348	NR unit increase	Illumina [1671387] (imputed)	N
1318	chr5	96156671	96156672	rs73774722	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5q15	NR	rs73774722-A	0.497	5E-137	(Endoplasmic reticulum aminopeptidase 1, ERAP1.4964.67.1)	0.63	[0.57-0.69] unit decrease	Affymetrix [10572788] (imputed)	N
1318	chr5	96159522	96159523	rs35134	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	5q15		rs35134-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1318	chr5	96159991	96159992	rs151823	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q15	NR	rs151823-A	0.1045	9E-9	(ERAP1)	0.005823	NR unit increase	Illumina [1671387] (imputed)	N
1318	chr5	96164610	96164611	rs152466	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	5q15	NR	rs152466-?	NR	2E-6		4.774	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1318	chr5	96166025	96166026	rs41135	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q15	NR	rs41135-C	0.4408	3E-10	(ERAP1)	0.003906	NR unit decrease	Illumina [1671387] (imputed)	N
1318	chr5	96167484	96167485	rs12520053	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	5q15	CTD-2260A17.2	rs12520053-C	0.1606426	4E-17	(EA, Endoplasmic reticulum aminopeptidase 1)	0.5115	[0.39-0.63] unit increase	Affymetrix [509946]	N
1318	chr5	96167535	96167536	rs152468	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q15	NR	rs152468-T	0.1969	2E-17	(ERAP1)	0.0067	NR unit increase	Illumina [1671387] (imputed)	N
1318	chr5	96174185	96174186	rs709668	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	5q15		rs709668-?	NR	8E-12				NR [~ 8900000] (imputed)	N
1318	chr5	96174185	96174186	rs709668	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	5q15	CTD-2260A17.2	rs709668-A	0.2027	1E-16		0.2534	[0.19-0.31] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1318	chr5	96174928	96174929	rs2549803	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	5q15	CTD-2260A17.2	rs2549803-?	NR	4E-12	(subset analysis)			Illumina [130052]	N
1318	chr5	96179345	96179346	rs2911138	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q15	NR	rs2911138-C	0.2805	2E-13	(ERAP1)	0.005226	NR unit increase	Illumina [1671387] (imputed)	N
1318	chr5	96182786	96182787	rs112009051	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	5q15		rs112009051-C	NR	3E-9		0.0151	[0.01-0.02] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1318	chr5	96182786	96182787	rs112009051	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	5q15		rs112009051-C	NR	3E-9		0.0153	[0.01-0.02] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
1318	chr5	96186987	96186988	rs2911132	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels (BMI interaction)	up to 15,007 European ancestry male individuals, up to 16,943 European ancestry female individuals	NA	5q15	ERAP1, ERAP2	rs2911132-G	0.62	2E-6	(Men)	0.013958143	[0.0082-0.0197] unit decrease	Affymetrix, Illumina [at least 188473] (imputed)	N
1318	chr5	96188665	96188666	rs2042381	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q15	NR	rs2042381-A	0.3049	6E-11	(ERAP1)	0.004477	NR unit increase	Illumina [1671387] (imputed)	N
1318	chr5	96204294	96204295	rs4092590	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q15	NR	rs4092590-C	0.2317	5E-10	(ERAP1)	0.004997	NR unit increase	Illumina [1671387] (imputed)	N
1319	chr5	96213170	96213171	rs1230361	29973135	Rimpela JM	2018-07-04	BMC Med Genet	Genome-wide association study of nocturnal blood pressure dipping in hypertensive patients.	Diastolic blood pressure night-to-day ratio in hypertension	204 Finnish ancestry individuals	NA	5q15	ERAP2	rs1230361-A	0.47	9E-6		2.1	percent increase	Illumina [631844]	N
1319	chr5	96223879	96223880	rs4869313	26301688	Li YR	2015-08-24	Nat Med	Meta-analysis of shared genetic architecture across ten pediatric autoimmune diseases.	Pediatric autoimmune diseases	97 European ancestry thyroiditis cases, 107 European ancestry ankylosing spondylitis cases, 100 European ancestry psoriasis cases, 173 European ancestry celiac disease cases, 254 European ancestry systemic lupus erythematosus cases, 308 European ancestry common variable inmunodeficiency cases, 865 European ancestry ulcerative colitis cases, 1,086 European ancestry Type 1 diabetes cases, 1,123  European ancestry juvenile idiopathic arthritis cases, 1,922  European ancestry Crohn's disease cases, 10,718 European ancestry controls	NA	5q15	ERAP2	rs4869313-T	0.42	9E-8				Illumina [7347414] (imputed)	N
1319	chr5	96227277	96227278	rs1559359	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	5q15		rs1559359-T	NR	7E-10		0.0148	[0.01-0.02] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1319	chr5	96229224	96229225	rs4869314	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	5q15		rs4869314-T	NR	1E-10		0.0136	[0.0095-0.0177] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
1319	chr5	96229224	96229225	rs4869314	33106285	Lopez-Isac E	2020-10-26	Ann Rheum Dis	Combined genetic analysis of juvenile idiopathic arthritis clinical subtypes identifies novel risk loci, target genes and key regulatory mechanisms.	Arthritis (juvenile idiopathic)	3,305 European ancestry cases, 9,196 European ancestry controls	2,751 European ancestry cases, 15,886 European ancestry controls	5q15	ERAP2	rs4869314-G	NR	3E-9		1.14	[1.09-1.19]	Illumina [7461261] (imputed)	N
1319	chr5	96229224	96229225	rs4869314	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	5q15		rs4869314-?	NR	2E-7				NR [~ 8900000] (imputed)	N
1319	chr5	96231055	96231056	rs34261036	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5q15	NR	rs34261036-G	0.005	2E-41	(Endoplasmic reticulum aminopeptidase 2, ERAP2.8960.3.3)	2.29	[1.96-2.62] unit increase	Affymetrix [10572788] (imputed)	N
1319	chr5	96234211	96234212	rs3096168	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	5q15	ERAP2	rs3096168-G	0.5	8E-12		6.84	z-score increase	Affymetrix [4314223] (imputed)	N
1319	chr5	96236892	96236892	rs71617149	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	5q15		rs71617149-GTTTT	NR	1E-18		0.0206	[0.016-0.025] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
1319	chr5	96238577	96238578	rs2548532	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	5q15		rs2548532-C	0.434	5E-11		0.008	[0.006-0.01] unit decrease	NR [NR] (imputed)	N
1319	chr5	96239257	96239258	rs17408150	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5q15	NR	rs17408150-A	0.054	4E-230	(Endoplasmic reticulum aminopeptidase 2, ERAP2.8960.3.3)	1.56	[1.46-1.66] unit decrease	Affymetrix [10572788] (imputed)	N
1319	chr5	96244548	96244549	rs2549794	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	5q15		rs2549794-T	0.5715	4E-10		0.14550833	[0.098-0.193] mmHg decrease	Affymetrix, Illumina [242865] (imputed)	N
1319	chr5	96244548	96244549	rs2549794	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	5q15		rs2549794-T	0.5715	1E-15		0.1182741	[0.089-0.148] mmHg decrease	Affymetrix, Illumina [242866] (imputed)	N
1319	chr5	96244548	96244549	rs2549794	21102463	Franke A	2010-11-21	Nat Genet	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry trios	5q15	ERAP2, LRAP	rs2549794-C	0.409	1E-10		1.05	[1.02-1.09]	Affymetrix, Illumina [953241] (imputed)	N
1319	chr5	96245968	96245968	rs11455840	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5q15	NR	rs11455840-CA	0.381	4E-300	(Endoplasmic reticulum aminopeptidase 2, ERAP2.8960.3.3)	0.88	[0.84-0.92] unit decrease	Affymetrix [10572788] (imputed)	N
1319	chr5	96252431	96252432	rs2927608	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5q15	ERAP2	rs2927608-A	0.437	7E-858	(Endoplasmic reticulum aminopeptidase 2, ERAP2.8960.3.3)	1.05	[1.01-1.09] unit increase	Affymetrix [10572788] (imputed)	N
1319	chr5	96252588	96252589	rs2910686	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q15	NR	rs2910686-C	0.448579	4E-14				Affymetrix, Illumina [23114412] (imputed)	N
1319	chr5	96252588	96252589	rs2910686	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	5q15	ERAP2	rs2910686-?	NR	2E-21	(subset analysis)			Illumina [130052]	N
1319	chr5	96252588	96252589	rs2910686	23749187	Cortes A	2013-07-01	Nat Genet	Identification of multiple risk variants for ankylosing spondylitis through high-density genotyping of immune-related loci.	Ankylosing spondylitis	9,069 European ancestry cases, 1,550 East Asian ancestry cases, 13,578 European ancestry controls, 1,567 East Asian ancestry controls	NA	5q15	ERAP2, ERAP1, LNPEP	rs2910686-C	0.44	5E-17	(conditioned on rs30187, EA)	1.17		Illumina [128935]	N
1319	chr5	96252588	96252589	rs2910686	23143594	Tsoi LC	2012-12-01	Nat Genet	Identification of 15 new psoriasis susceptibility loci highlights the role of innate immunity.	Psoriasis	10,588 European ancestry cases, 22,806 European ancestry controls	NA	5q15	ERAP1	rs2910686-C	0.44	2E-8	(conditioned on rs27432)	1.12		Illumina [111236] (imputed)	N
1319	chr5	96252802	96252803	rs1363907	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	5q15	ERAP2, CTD-2260A17.2, LNPEP	rs1363907-?		1E-10				Illumina [9725440] (imputed)	N
1319	chr5	96252802	96252803	rs1363907	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	5q15	ERAP2, CTD-2260A17.2, LNPEP	rs1363907-?		1E-14				Illumina [9560910] (imputed)	N
1319	chr5	96252802	96252803	rs1363907	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	5q15	NR	rs1363907-A	0.4212	4E-6	(EA)	1.0618593	[1.04-1.09]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1319	chr5	96252802	96252803	rs1363907	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	5q15	NR	rs1363907-A	0.4212	5E-15	(EA)	1.084916	[1.06-1.11]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1319	chr5	96252802	96252803	rs1363907	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	5q15	NR	rs1363907-A	0.4212	4E-16	(EA)	1.10802	[1.08-1.13]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1319	chr5	96252802	96252803	rs1363907	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	5q15	ERAP2, LNPEP, ERAP1	rs1363907-A	0.411	6E-13		1.068	[1.037-1.099]	Affymetrix, Illumina [1230000] (imputed)	N
1319	chr5	96264999	96265000	rs716848	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	5q15	CTD-2260A17.2	rs716848-A	0.436035	2E-9		0.013309557	[0.0089-0.0177] unit increase	Affymetrix [93095623] (imputed)	N
1319	chr5	96275153	96275154	rs2617439	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	5q15	LNPEP	rs2617439-A	0.42855	8E-11		0.014633614	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
1319	chr5	96275200	96275201	rs2432142	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	5q15	NR	rs2432142-A	0.433689	1E-11		0.012676	[0.009-0.0163] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
1319	chr5	96275200	96275201	rs2432142	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	5q15	NR	rs2432142-A	0.435047	2E-14		0.01491	[0.011-0.019] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
1319	chr5	96290646	96290647	rs7705093	24957906	Kuiper JJ	2014-06-22	Hum Mol Genet	A genome-wide association study identifies a functional ERAP2 haplotype associated with birdshot chorioretinopathy.	Birdshot chorioretinopathy	117 European ancestry cases, 693 European ancestry  controls	30 European ancestry cases, 2,793 European ancestry controls	5q15	ERAP2, LNPEP, ERAP1	rs7705093-T	0.442	2E-9		2.2	[1.70-2.90]	Illumina [9932851] (imputed)	N
1319	chr5	96298757	96298758	rs1423357	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	5q15	NR	rs1423357-?	NR	9E-6		4.436	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1319	chr5	96322135	96322136	rs38033	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	5q15	ERAP2	rs38033-A	0.543125	4E-721	(ERAP2, 8960_3_3)	1.1203456	[1.09-1.15] unit decrease	Illumina [> 1000000] (imputed)	N
1319	chr5	96330169	96330170	rs11343706	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5q15	NR	rs11343706-A	0.378	3E-333	(Endoplasmic reticulum aminopeptidase 2, ERAP2.8960.3.3)	0.94	[0.9-0.98] unit decrease	Affymetrix [10572788] (imputed)	N
1320	chr5	96345069	96345069	rs11414909	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	5q15	LNPEP	rs11414909-TC	0.561159	1E-10		0.014341537	[0.01-0.0187] unit increase	Affymetrix [93095623] (imputed)	N
1320	chr5	96353222	96353223	rs38029	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	5q15	NR	rs38029-G	0.577	8E-7		0.00540568	[0.0033-0.0075] unit increase	NR [9732723] (imputed)	N
1320	chr5	96357177	96357178	rs27293	23603761	Hinks A	2013-04-21	Nat Genet	Dense genotyping of immune-related disease regions identifies 14 new susceptibility loci for juvenile idiopathic arthritis.	Juvenile idiopathic arthritis (oligoarticular or rheumatoid factor-negative polyarticular)	2,816 European ancestry cases, 13,056 European ancestry controls	NA	5q15	ERAP2, LNPEP	rs27293-A	0.44	7E-9	(dominant model)	1.31	[1.19-1.43]	Illumina [123003]	N
1320	chr5	96374149	96374150	rs27303	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	5q15	LNPEP	rs27303-G	0.1835507	2E-14	(EA, Endoplasmic reticulum aminopeptidase 1)	0.4386	[0.33-0.55] unit decrease	Affymetrix [509946]	N
1320	chr5	96391847	96391848	rs116405853	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	5q15	SETP22	rs116405853-T	0.0035	6E-6		0.3192	[0.18-0.46] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1320	chr5	96399680	96399681	rs11953095	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	5q15	NR	rs11953095-?	NR	8E-12				Affymetrix [NR]	N
1321	chr5	96533468	96533469	rs1000083	28039263	Wheeler HE	2016-12-30	Clin Cancer Res	Variants in WFS1 and Other Mendelian Deafness Genes Are Associated with Cisplatin-Associated Ototoxicity.	Cisplatin-induced ototoxicity	511 European ancestry testicular cancer survivor individuals	238 children	5q15	intergenic	rs1000083-T	NR	5E-6		4.55	z score decrease	Illumina [5060354] (imputed)	N
1322	chr5	96688708	96688709	rs7709866	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid respiratory support vs population)	495 European ancestry cases, 680,440 European ancestry controls, 102 Hispanic or Latin American cases, 94,330 Hispanic or Latin American controls, 39 Black or African American cases, 22,410 Black or African American controls	NA	5q15		rs7709866-?	NR	1E-6		0.7014854	[0.42-0.98] unit increase	Illumina [9842460] (imputed)	N
1323	chr5	96747223	96747224	rs75810402	31417607	Gazal S	2019-07-30	Front Genet	The Genetic Architecture of Chronic Mountain Sickness in Peru.	Chronic mountain sickness	166 Quechua cases, 146 Quechua controls	NA	5q15	RIOK2, LINC01340	rs75810402-G		7E-6		3.57	[2.00-7.69]	Affymetrix [1288199]	N
1323	chr5	96752204	96752205	rs291821	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x short total sleep time interaction (2df test)	2,990 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,300 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, at least 11,842 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,350 European ancestry controls, 4,047 Hispanic/Latino controls	at least 220 African American short sleepers, 326 East Asian ancestry short sleepers, up to 5,288 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 1,292 East Asian ancestry controls, up to 20,844 European ancestry controls, 10,062 Hispanic controls	5q15	LINC01340	rs291821-?	NR	2E-10		0.01747	[0.0099-0.025] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
1323	chr5	96785805	96785806	rs71654380	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	5q15	NR	rs71654380-C	NR	3E-6	(GEE model)	0.93659	[0.54-1.33] unit decrease	NR [NR] (imputed)	N
1324	chr5	96949072	96949073	rs55988457	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	5q15	NR	rs55988457-?	NR	6E-8				Affymetrix [5486770] (imputed)	N
1325	chr5	97051000	97051001	rs1816300	34162658	Quinn MC	2021-06-23	Cancer Epidemiol Biomarkers Prev	Identification of a locus near ULK1 associated with progression-free survival in ovarian cancer.	Progression free survival in serous epithelial ovarian cancer	4,037 European ancestry individuals	NA	5q15	NR	rs1816300-A		1E-6		0.6306	[0.38-0.89] unit decrease	Illumina [12770451] (imputed)	N
1325	chr5	97051000	97051001	rs1816300	34162658	Quinn MC	2021-06-23	Cancer Epidemiol Biomarkers Prev	Identification of a locus near ULK1 associated with progression-free survival in ovarian cancer.	Progression free survival in epithelial ovarian cancer	5,596 European ancestry individuals	NA	5q15	NR	rs1816300-A		2E-6		0.5632	[0.33-0.8] unit decrease	Illumina [12770451] (imputed)	N
1325	chr5	97076547	97076548	rs10515260	23518928	Liu M	2013-03-21	Mol Endocrinol	TSPYL5 SNPs: association with plasma estradiol concentrations and aromatase expression.	Estradiol plasma levels (breast cancer)	700 European ancestry cases, 50 African ancestry cases, 17 Asian ancestry cases, 5 American Indian ancestry cases	NA	5q15	NR	rs10515260-?	0.035	6E-7		1.913	[1.485-2.463] unit increase	Illumina [563945]	N
1325	chr5	97079217	97079218	rs17652819	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Herbinix abundance in stool	5,959 Finnish ancestry individuals	NA	5q15		rs17652819-T	0.0104447	4E-8		0.147733	[0.095-0.2] unit increase	Illumina [7980478] (imputed)	N
1326	chr5	97207541	97207542	rs6557013	29559693	Zengini E	2018-03-20	Nat Genet	Genome-wide analyses using UK Biobank data provide insights into the genetic architecture of osteoarthritis.	Osteoarthritis (self-reported)	12,658 European ancestry cases, 50,898 European ancestry controls		5q15	NR	rs6557013-A	0.958029	1E-6		1.17485	[1.09334-1.26244]	Affymetrix [16499239] (imputed)	N
1326	chr5	97252706	97252707	rs189144591	27629369	Gao J	2016-09-15	Neuropsychopharmacology	Genome-Wide Association Study of Loneliness Demonstrates a Role for Common Variation.	Loneliness (multivariate analysis)	8,490 European ancestry individuals, 1,228 African American individuals, 867 Hispanic American individuals, 175 individuals	NA	5q15	LINC01340, RGMB	rs189144591-?	NR	3E-6	(EA)			Illumina [7205781] (imputed)	N
1327	chr5	97337146	97337147	rs185385	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5q15	RIOK2	rs185385-?	NR	7E-6	(xanthurenate)	0.353195	[0.2-0.51] unit increase	Affymetrix [at least 2500000] (imputed)	N
1328	chr5	97438981	97438982	rs7725036	31080455	Fatumo S	2019-04-26	Front Genet	Complimentary Methods for Multivariate Genome-Wide Association Study Identify New Susceptibility Genes for Blood Cell Traits.	Red blood cell count	1,625 Sub-Saharan African ancestry individuals	NA	5q15	AC008834.1	rs7725036-?	NR	5E-8				Illumina [20594536] (imputed)	N
1328	chr5	97440261	97440262	rs7733470	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	5q15		rs7733470-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1330	chr5	97657842	97657843	rs2061115	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin I concentration	1,606 African American individuals	NA	5q15		rs2061115-?	NR	5E-6		0.17	[0.097-0.243] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1330	chr5	97764142	97764143	rs1563319	33888516	Zheng T	2021-04-22	Gut	Genome-wide analysis of 944 133 individuals provides insights into the etiology of haemorrhoidal disease.	Haemorrhoidal disease	218,920 European ancestry cases, 725,213 European ancestry controls	NA	5q15	intergenic	rs1563319-?	0.49229999999999996	9E-9		0.98	[0.97-0.98]	Affymetrix, Illumina [8494288] (imputed)	N
1330	chr5	97768485	97768486	rs1563317	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5q15	RGMB	rs1563317-G	0.553	1E-18	(RGM domain family member B, RGMB.3331.8.1)	0.22	[0.18-0.26] unit increase	Affymetrix [10572788] (imputed)	N
1331	chr5	97820661	97820662	rs74795303	33831438	Williams JE	2021-04-05	Genomics	Key genetic variants associated with variation of milk oligosaccharides from diverse human populations.	Human milk oligosaccharide concentration (lacto-N-fucopentaose III) in non-secretors	90 European, Sub-Saharan African, Hispanic or unknown ancestry individuals	NA	5q15		rs74795303-?	NR	1E-9				Illumina [1128286]	N
1331	chr5	97821451	97821452	rs11241621	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	5q15	NR	rs11241621-?	NR	2E-6		0.0749	[0.044-0.106] unit increase	Illumina [at least 560000] (imputed)	N
1331	chr5	97826639	97826640	rs116075081	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5q15		rs116075081-?	NR	5E-14				NR [~ 8900000] (imputed)	N
1331	chr5	97840200	97840201	rs74409630	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (90 or 130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	5q15	intergenic	rs74409630-?	NR	5E-6		0.278	[0.092-0.464] unit decrease	Illumina [at least 13000000] (imputed)	N
1331	chr5	97888735	97888736	rs4703129	21182207	Salyakina D	2010-12-01	Autism Res	Variants in several genomic regions associated with asperger disorder.	Asperger disorder	848 individuals from 232 families	NA	5q15	RGMB	rs4703129-?	0.41	1E-6				Illumina [439282] (imputed)	N
1332	chr5	97929965	97929966	rs461409	24236485	Cornejo-Garcia JA	2013-11-01	Pharmacogenomics	Genome-wide association study in NSAID-induced acute urticaria/angioedema in Spanish and Han Chinese populations.	Acute urticaria and angioedema (non-steroidal anti-inflammatory drug-induced)	112 European ancestry cases, 124 European ancestry controls, 120 Han Chinese ancestry cases, 101 Han Chinese ancestry controls	NA	5q15	RGMB, AKAP9	rs461409-?	NR	3E-6	(EA)			Affymetrix [up to 644046]	N
1332	chr5	97953718	97953719	rs1871190	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	NA	5q15	RGMB	rs1871190-G	0.6651	2E-9		0.1954	[0.13-0.26] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1332	chr5	97986628	97986629	rs141026162	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	5q15	Intergenic	rs141026162-C	0.998	3E-6	(AA)	1.115	NR unit increase	Illumina [NR] (imputed)	N
1333	chr5	98123346	98123347	rs2617515	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	5q15		rs2617515-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1333	chr5	98144194	98144194	rs34675278	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	5q15	intergenic	rs34675278-CA	0.6883	2E-9		0.02490084	[0.017-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
1333	chr5	98157519	98157520	rs111887461	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of granulocytes	170,223 European ancestry individuals	NA	5q15	intergenic	rs111887461-A	0.0925	3E-10		0.03888486	[0.027-0.051] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1333	chr5	98158523	98158524	rs331917	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	5q15	intergenic	rs331917-A	0.4197	4E-11		0.0127	[0.009-0.0164] unit increase	Affymetrix [18391927] (imputed)	N
1334	chr5	98187509	98187510	rs111536497	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	5q15	CHD1	rs111536497-A	0.090666	3E-18		0.034748845	[0.027-0.043] unit decrease	Affymetrix [93095623] (imputed)	N
1334	chr5	98187509	98187510	rs111536497	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	5q15	NR	rs111536497-A	0.091213	7E-13		0.026796	[0.019-0.034] SD unit decrease	Affymetrix, Illumina [50036608] (imputed)	N
1334	chr5	98187509	98187510	rs111536497	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of white cells	171,996 European ancestry individuals	NA	5q15	CHD1	rs111536497-A	0.0909	6E-10		0.0379827	[0.026-0.05] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1334	chr5	98191735	98191736	rs2455425	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	5q15	CHD1	rs2455425-C	0.085824	7E-13		0.029490355	[0.021-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
1334	chr5	98206081	98206082	rs145364999	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	5q15	NR	rs145364999-T	0.9971	6E-9		1.74	[1.45-2.10]	Affymetrix, Illumina [16900397] (imputed)	N
1334	chr5	98241228	98241229	rs11317778	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	5q21.1	CHD1	rs11317778-T	0.2777	3E-12		0.02782362	[0.02-0.036] unit increase	Affymetrix [~ 2500000] (imputed)	N
1334	chr5	98241228	98241229	rs11317778	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	5q21.1	CHD1	rs11317778-T	0.2777	2E-13		0.02928997	[0.022-0.037] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1334	chr5	98241228	98241229	rs11317778	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	5q21.1	CHD1	rs11317778-T	0.2777	2E-13		0.0293293	[0.022-0.037] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1334	chr5	98241228	98241229	rs11317778	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	5q21.1	CHD1	rs11317778-T	0.2777	1E-10		0.02551863	[0.018-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1334	chr5	98260574	98260575	rs162159	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	5q21.1	NR	rs162159-T	0.088009	3E-10		0.02061	[0.014-0.027] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1334	chr5	98265806	98265807	rs34495	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	5q21.1	CTD-2007H13.3	rs34495-T	0.304327	4E-27		0.026423836	[0.022-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
1334	chr5	98265806	98265807	rs34495	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	5q21.1	CTD-2007H13.3	rs34495-T	0.304352	2E-17		0.02038631	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1334	chr5	98265806	98265807	rs34495	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q21.1	NR	rs34495-T	0.274662	2E-17				Affymetrix, Illumina [19872809] (imputed)	N
1334	chr5	98265806	98265807	rs34495	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	5q21.1	NR	rs34495-T	0.304172	4E-20		0.01983	[0.016-0.024] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
1334	chr5	98275196	98275197	rs150992	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	5q21.1	LOC100289230	rs150992-A	0.723	5E-7	(EA)	0.017	[0.011-0.024] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1334	chr5	98275196	98275197	rs150992	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	5q21.1	LOC100289230	rs150992-A	0.721	7E-7		0.017	[0.01-0.023] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1334	chr5	98277877	98277881	rs35261354	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	5q21.1		rs35261354-G	NR	4E-10		0.0115	[0.008-0.015] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
1334	chr5	98289566	98289567	rs467728	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	5q21.1		rs467728-?	NR	6E-18				NR [~ 8900000] (imputed)	N
1334	chr5	98294884	98294885	rs34500	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	5q21.1	CTD-2007H13.3	rs34500-A	0.083881	4E-18		0.034895245	[0.027-0.043] unit decrease	Affymetrix [93095623] (imputed)	N
1334	chr5	98294884	98294885	rs34500	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	5q21.1	CTD-2007H13.3	rs34500-A	0.083877	3E-12		0.028039083	[0.02-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
1334	chr5	98294884	98294885	rs34500	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q21.1	NR	rs34500-A	0.0817018	3E-10				Affymetrix, Illumina [19905671] (imputed)	N
1335	chr5	98304563	98304564	rs325220	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	5q21.1	NA	rs325220-A	0.2976	4E-9		0.0106	[0.0071-0.0141] unit decrease	NR [~ 27400000] (imputed)	N
1335	chr5	98312446	98312447	rs40075	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	5q21.1		rs40075-?	NR	2E-13				NR [~ 8900000] (imputed)	N
1335	chr5	98342867	98342868	rs1501911	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FEV1/FVC)	48,943 European ancestry individuals	57,176 European ancestry individuals, 38,199 individuals.	5q21.1	NR	rs1501911-A	0.61	6E-8		0.022	[0.014-0.03] unit increase	Affymetrix [27624732] (imputed)	N
1336	chr5	98451374	98451375	rs77547572	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	5q21.1	NR	rs77547572-A	0.081454	1E-9		0.025681613	[0.017-0.034] unit increase	Affymetrix [93095623] (imputed)	N
1336	chr5	98451374	98451375	rs77547572	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	5q21.1	NR	rs77547572-A	0.0814550000000001	4E-11		0.027745685	[0.019-0.036] unit increase	Affymetrix [93095623] (imputed)	N
1336	chr5	98451374	98451375	rs77547572	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	5q21.1		rs77547572-A	0.081436	4E-9		0.02456208	[0.016-0.033] unit increase	Affymetrix [93095623] (imputed)	N
1336	chr5	98495497	98495498	rs113816795	28736931	Rotroff DM	2017-07-24	Clin Pharmacol Ther	Genetic Variants in HSD17B3, SMAD3, and IPO11 Impact Circulating Lipids in Response to Fenofibrate in Individuals With Type 2 Diabetes.	Total cholesterol change in response to fenofibrate in statin-treated type 2 diabetes	781 European ancestry individuals, 138 African American ancestry individuals, 345 unknown ancestry individuals		5q21.1	intergenic	rs113816795-?	NR	2E-7	(AA)	0.072	unit increase	Affymetrix, Illumina [8129838] (imputed)	N
1336	chr5	98513703	98513704	rs78290798	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	5q21.1		rs78290798-G	0.07159	7E-12		0.03076468	[0.022-0.04] unit decrease	Affymetrix [93095623] (imputed)	N
1337	chr5	98579963	98579964	rs17736767	22044751	Foster MC	2011-11-01	BMC Med Genet	Heritability and genome-wide association analysis of renal sinus fat accumulation in the Framingham Heart Study.	Renal sinus fat	2,809 European ancestry individuals	NA	5q21.1	CHD1	rs17736767-G	0.27	7E-6		0.208	[0.12-0.30] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1337	chr5	98593452	98593453	rs1500251	24024966	Teumer A	2013-08-14	J Clin Periodontol	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (Mean PAL)	up to 4,032 European ancestry individuals	NA	5q21.1	CHD1	rs1500251-A	0.2	9E-6	(Age 20-81 years)	0.0545	[0.031-0.078] unit decrease	Affymetrix, Illumina [up to 17585496] (imputed)	N
1337	chr5	98597869	98597870	rs114601691	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Deep white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	5q21.1	RP11-93O17.1	rs114601691-A	0.0257	2E-6		0.1742	[0.1-0.25] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1337	chr5	98670640	98670641	rs189740529	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	5q21.1	NR	rs189740529-?	NR	4E-12		15744.726	NR unit decrease	Illumina [2379855]	N
1337	chr5	98692371	98692373	rs201685870	30487263	Pollack S	2018-11-28	Diabetes	Multiethnic Genome-wide Association Study of Diabetic Retinopathy using Liability Threshold Modeling of Duration of Diabetes and Glycemic Control.	Diabetic retinopathy (moderate NPDR and PDR)	644 European ancestry cases, 1,970 European ancestry controls, 768 African American cases, 941 African American controls	2,388 East Asian ancestry cases, 6,219 East Asian ancestry controls, 1,658 European ancestry cases, 3,019 European ancestry controls, 1,014 Hispanic cases, 1,240 Hispanic controls	5q21.1	NR	rs201685870-?	NR	2E-6	(AA, adjusted for duration of diabetes and glycemic control)	1.4492754	[NR]	Affymetrix, Illumina [NR] (imputed)	N
1338	chr5	98715767	98715768	rs11745890	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	5q21.1	NR	rs11745890-C	0.0301678793134195	4E-6	(IGP38)	0.5502	[0.32-0.78] unit increase	Illumina [~ 2500000] (imputed)	N
1338	chr5	98781102	98781103	rs1829883	17903294	Yang Q	2007-09-19	BMC Med Genet	Genome-wide association and linkage analyses of hemostatic factors and hematological phenotypes in the Framingham Heart Study.	Hemostatic factors and hematological phenotypes	Up to 1,062 European ancestry individuals	NA	5q21.1	intergenic	rs1829883-?	0.41	6E-6	(MCH)			Affymetrix [70897]	N
1339	chr5	98880298	98880299	rs17167021	24262325	Dichgans M	2013-11-21	Stroke	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Large artery stroke	2,167 cases, 49,159 controls	NA	5q21.1	intergenic	rs17167021-G	NR	1E-7		1.81	[1.42-2.30]	Affymetrix, Illumina [~ 2400000] (imputed)	N
1339	chr5	98903040	98903041	rs2460661	31996736	Elsheikh SSM	2020-01-29	Sci Rep	Genome-Wide Association Study of Brain Connectivity Changes for Alzheimer's Disease.	Longitudinal brain connectivity change (Louvain modularity)	57 European ancestry individuals	NA	5q21.1	NR	rs2460661-C	NR	1E-7		5.3	z score increase	NR [9015039] (imputed)	N
1341	chr5	99157978	99157979	rs7448169	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	5q21.1	intergenic	rs7448169-G	0.45	4E-6				Illumina [905956]	N
1341	chr5	99216630	99216631	rs114861083	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Deep white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	5q21.1	CTD-2160D9.1	rs114861083-T	0.0416	8E-6		0.0968	[0.054-0.139] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1342	chr5	99305936	99305937	rs13163913	29703947	Jawinski P	2018-04-27	Mol Psychiatry	Human brain arousal in the resting state: a genome-wide association study.	Resting-state electroencephalogram vigilance	1,877 European ancestry individuals	NA	5q21.1	EEF1A1P20	rs13163913-T	0.858	6E-7	(Slope index)	0.208	[0.13-0.29] unit decrease	Affymetrix [8042262] (imputed)	N
1342	chr5	99342046	99342047	rs10067427	20708005	Chalasani N	2010-08-10	Gastroenterology	Genome-wide association study identifies variants associated with histologic features of nonalcoholic Fatty liver disease.	Non-alcoholic fatty liver disease histology (lobular)	236 European ancestry cases	NA	5q21.1	intergenic	rs10067427-G	0.30	5E-6		0.75	[NR] unit increase	Illumina [324623]	N
1347	chr5	99878031	99878032	rs26030	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	5q21.1		rs26030-?	NR	6E-8				NR [~ 8900000] (imputed)	N
1347	chr5	99986536	99986537	rs6866306	30690781	Pei YF	2019-02-28	J Bone Miner Res	Joint Association Analysis Identified 18 New Loci for Bone Mineral Density.	Total body bone mineral density (MTAG)	at least 66,628 individuals	NA	5q21.1	NR	rs6866306-T	0.55	3E-9		0.03	[0.02-0.04] unit decrease	NR [9704453]	N
1347	chr5	99986536	99986537	rs6866306	30690781	Pei YF	2019-02-28	J Bone Miner Res	Joint Association Analysis Identified 18 New Loci for Bone Mineral Density.	Heel bone mineral density (MTAG)	at least 142,487 individuals	NA	5q21.1	NR	rs6866306-T	0.55	2E-9		0.02	[0.012-0.028] unit decrease	NR [9704453]	N
1347	chr5	99991647	99991648	rs4702982	19165232	Otowa T	2009-01-23	J Hum Genet	Genome-wide association study of panic disorder in the Japanese population.	Panic disorder	200 Japanese ancestry cases, 200 Japanese ancestry controls	NA	5q21.1	intergenic	rs4702982-?	0.16	6E-6				Affymetrix [253903]	N
1348	chr5	100015927	100015927	rs758752368	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	5q21.1		rs758752368-?	NR	9E-17		0.0166788	[0.013-0.021] unit decrease	Affymetrix [20259828] (imputed)	N
1348	chr5	100024838	100024839	rs62387565	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	5q21.1	NR	rs62387565-T	0.484022	1E-14		0.014243	[0.011-0.018] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
1348	chr5	100025697	100025698	rs10515269	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	5q21.1	FAM174A	rs10515269-C	0.520374	1E-17		0.0158493	[0.012-0.019] unit decrease	NR [13737936] (imputed)	N
1348	chr5	100025697	100025698	rs10515269	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	5q21.1		rs10515269-?	NR	5E-15				NR [~ 8900000] (imputed)	N
1348	chr5	100028990	100028991	rs2590423	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	5q21.1		rs2590423-T	NR	2E-9		0.0118	[0.0079-0.0157] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1348	chr5	100046074	100046075	rs1445171	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q21.1	NR	rs1445171-C	0.531504	8E-12				Affymetrix, Illumina [23114412] (imputed)	N
1348	chr5	100046074	100046075	rs1445171	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	5q21.1	NR	rs1445171-C	0.516908	1E-13		0.014312	[0.011-0.018] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
1348	chr5	100135864	100135865	rs6886392	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	5q21.1	ST8SIA4	rs6886392-?	NR	4E-9		1.13	[1.08-1.18]	Illumina [at least 5000000] (imputed)	N
1349	chr5	100141373	100141374	rs2544920	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	5q21.1		rs2544920-T	NR	2E-8		0.0125	[0.0082-0.0168] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
1349	chr5	100141373	100141374	rs2544920	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	5q21.1	ST8SIA4	rs2544920-A	0.226	9E-10		1.122	[1.08-1.16]	Illumina [11270530] (imputed)	N
1349	chr5	100141373	100141374	rs2544920	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	5q21.1	ST8SIA4	rs2544920-T	0.617452	4E-10		0.014243656	[0.0098-0.0187] unit increase	Affymetrix [93095623] (imputed)	N
1349	chr5	100149834	100149835	rs3909452	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q21.1	NR	rs3909452-G	0.649694	3E-10				Affymetrix, Illumina [23467995] (imputed)	N
1349	chr5	100151840	100151841	rs2548280	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q21.1	NR	rs2548280-T	0.628284	2E-11				Affymetrix, Illumina [23472807] (imputed)	N
1349	chr5	100158867	100158868	rs2725117	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	5q21.1	NR	rs2725117-C	0.608755	4E-13		0.014628	[0.011-0.019] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1349	chr5	100162316	100162317	rs2548257	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	5q21.1	NR	rs2548257-A	0.653021	5E-11		0.012909	[0.0091-0.0168] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
1349	chr5	100172363	100172364	rs12153670	33493351	Song Q	2021-01-25	Rheumatology (Oxford)	Genome-wide association study on Northern Chinese identifies KLF2, DOT1L and STAB2 associated with systemic lupus erythematosus.	Systemic lupus erythematosus	4,734 Chinese ancestry cases, 9,425 Chinese ancestry controls, 4,576 European ancestry cases, 8,039 European ancestry controls	NA	5q21.1	ST8SIA4	rs12153670-G	NR	8E-10		1.15	[1.11-1.19]	Illumina [3860730] (imputed)	N
1349	chr5	100172363	100172364	rs12153670	33493351	Song Q	2021-01-25	Rheumatology (Oxford)	Genome-wide association study on Northern Chinese identifies KLF2, DOT1L and STAB2 associated with systemic lupus erythematosus.	Systemic lupus erythematosus	4,576 European ancestry cases, 8,039 European ancestry controls	NA	5q21.1	ST8SIA4	rs12153670-G	0.314	2E-6		1.15	[1.09-1.21]	Illumina [at least 3860730]	N
1349	chr5	100177518	100177519	rs2548279	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls	NA	5q21.1	ST8SIA4	rs2548279-?	NR	2E-6		1.12	[1.07-1.17]	Illumina [at least 5000000] (imputed)	N
1349	chr5	100184646	100184647	rs55849330	29848360	Julia A	2018-05-30	Arthritis Res Ther	Genome-wide association study meta-analysis identifies five new loci for systemic lupus erythematosus.	Systemic lupus erythematosus	4,943 European ancestry cases, 8,483 European ancestry controls	NA	5q21.1	ST8SIA4	rs55849330-A	NR	5E-8		1.16	[1.11-1.21]	Illumina [7110321] (imputed)	N
1349	chr5	100189693	100189715	rs375138924	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	5q21.1	ST8SIA4	rs375138924-G	0.672208	5E-10		0.014939948	[0.01-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1349	chr5	100200909	100200910	rs2059846	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	5q21.1		rs2059846-?	NR	4E-10				NR [~ 8900000] (imputed)	N
1349	chr5	100202282	100202284	rs141002831	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	8,021 European ancestry cases, 16,489 European ancestry controls	NA	5q21.1		rs141002831-T	NR	1E-7		0.120115	[0.075-0.165] unit increase	NR [5054572] (imputed)	N
1349	chr5	100238074	100238074	rs60643069	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	8,021 European ancestry cases, 16,489 European ancestry controls, 2,495 East Asian ancestry cases, 4,283 East Asian ancestry controls	NA	5q21.1		rs60643069-GA	NR	2E-9		0.125227	[0.084-0.166] unit increase	NR [2787054] (imputed)	N
1350	chr5	100271133	100271134	rs4703133	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q21.1	NR	rs4703133-G	0.363088	8E-14				Affymetrix, Illumina [24649327] (imputed)	N
1350	chr5	100301805	100301806	rs17161553	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	5q21.1	NR	rs17161553-C	0.00759786255756579	1E-6	(IGP26)	1.6947	[1.01-2.38] unit increase	Illumina [~ 2500000] (imputed)	N
1350	chr5	100301805	100301806	rs17161553	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	5q21.1	NR	rs17161553-C	0.00759162019720625	6E-6	(IGP17)	1.5958	[0.9-2.29] unit increase	Illumina [~ 2500000] (imputed)	N
1350	chr5	100379311	100379312	rs502652	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	5q21.1		rs502652-?	NR	9E-8				NR [~ 8900000] (imputed)	N
1350	chr5	100379311	100379312	rs502652	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	5q21.1	NR	rs502652-T	NR	4E-8		0.01357	[0.0087-0.0184] unit decrease	Affymetrix [10847151] (imputed)	N
1350	chr5	100379392	100379393	rs575018	24785509	Barnett GC	2014-04-28	Radiother Oncol	A genome wide association study (GWAS) providing evidence of an association between common genetic variants and late radiotherapy toxicity.	Response to radiotherapy in cancer (late toxicity)	579 European ancestry prostate cancer cases, 1,194 European ancestry breast cancer cases	516 European ancestry prostate cancer cases, 862 prostate cancer cases, 355 breast cancer cases	5q21.1	ST8SIA4	rs575018-?	0.34	7E-7	(Breast cancer, overall toxicity, univariable analysis)	0.13	[NR] unit decrease	Illumina [2417493] (imputed)	N
1351	chr5	100401433	100401434	rs73777486	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	5q21.1	Intergenic	rs73777486-G	0.976	4E-6	(AA)	0.052	unit increase	Illumina [NR] (imputed)	N
1351	chr5	100456943	100456944	rs76933135	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	5q21.1	Intergenic	rs76933135-T	0.975	5E-6	(AA)	0.05	unit increase	Illumina [NR] (imputed)	N
1351	chr5	100507208	100507209	rs11950172	30801121	O'Donnell S	2019-02-25	Inflamm Bowel Dis	The Unsolved Link of Genetic Markers and Crohn's Disease Progression: A North American Cohort Experience.	Crohn's disease (time to progression)	662 European ancestry individuals	NA	5q21.1	NR	rs11950172-C	0.396837	3E-6				Illumina [5378266] (imputed)	N
1351	chr5	100508994	100508995	rs73777909	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	5q21.1	Intergenic	rs73777909-C	0.976	4E-6	(AA)	0.051	unit increase	Illumina [NR] (imputed)	N
1351	chr5	100515868	100515869	rs77905828	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	5q21.1	Intergenic	rs77905828-A	0.978	2E-6	(AA)	0.054	unit increase	Illumina [NR] (imputed)	N
1352	chr5	100541464	100541465	rs6421896	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	5q21.1	Intergenic	rs6421896-A	0.3547	4E-8		0.0112	[0.0073-0.0151] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1352	chr5	100573720	100573721	rs143921965	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	5q21.1	ST8SIA4	rs143921965-A	0.9989	1E-6		1.1033	[0.66-1.55] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1352	chr5	100576280	100576281	rs11956923	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	5q21.1	Intergenic	rs11956923-C	0.723	4E-6	(AA)	0.016	unit increase	Illumina [NR] (imputed)	N
1352	chr5	100592093	100592094	rs73780158	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	5q21.1	Intergenic	rs73780158-G	0.98	5E-7	(AA)	0.062	unit increase	Illumina [NR] (imputed)	N
1352	chr5	100595837	100595838	rs72782825	33106475	Li QS	2020-10-26	Transl Psychiatry	Genome-wide association studies of antidepressant class response and treatment-resistant depression.	Response to norepinephrine-dopamine reuptake inhibitors (responders vs non-responders)	3,971 European ancestry responders, 3,512 European ancestry non-responders	NA	5q21.1	NR	rs72782825-T	NR	2E-6		0.6909	NR	Illumina [at least 560000] (imputed)	N
1352	chr5	100651642	100651643	rs146619161	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Hepatitis A	2,442 European ancestry cases, 217,137 European ancestry controls	NA	5q21.1	NR	rs146619161-?	NR	8E-6		0.7811	[0.47-1.09] unit increase	Illumina [at least 560000] (imputed)	N
1353	chr5	100701599	100701600	rs12153327	25390645	Otowa T	2014-11-12	PLoS One	Genome-wide and gene-based association studies of anxiety disorders in European and African American samples.	Anxiety disorder	324 African American cases, 273 African American controls, 757 European ancestry cases, 940 European ancestry controls	NA	5q21.1	intergenic	rs12153327-C		2E-6	(EA, factor score analysis)	0.064	[NR] unit decrease	Affymetrix [up to 730090]	N
1353	chr5	100750866	100750867	rs980831	29615537	Kulminski AM	2018-03-01	Aging (Albany NY)	Strong impact of natural-selection-free heterogeneity in genetics of age-related phenotypes.	Coronary heart disease	6,403 European ancestry cases, up to 27,028 European ancestry controls	NA	5q21.1	NR	rs980831-T	0.022	6E-6		0.2922392	unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1354	chr5	100831699	100831700	rs113510721	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	5q21.1	NR	rs113510721-?	NR	8E-6		12.699	NR unit increase	Affymetrix [at least 600000] (imputed)	N
1354	chr5	100832136	100832137	rs28806579	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	5q21.1	NR	rs28806579-?	NR	8E-6		12.699	NR unit increase	Affymetrix [at least 600000] (imputed)	N
1354	chr5	100848340	100848341	rs115887893	33592630	Herrera-Rivero M	2021-02-16	Thromb Haemost	Single- and Multimarker Genome-Wide Scans Evidence Novel Genetic Risk Modifiers for Venous Thromboembolism.	Venous thromboembolism	964 European ancestry cases, 899 European ancestry controls	NA	5q21.1	RN7SL802P	rs115887893-A	NR	7E-9		4.117	[2.548-6.651]	Illumina [484621]	N
1355	chr5	100948544	100948545	rs13188771	18846501	Sonuga-Barke EJ	2008-10-07	Am J Med Genet B Neuropsychiatr Genet	Does parental expressed emotion moderate genetic effects in ADHD? An exploration using a genome wide association scan.	Conduct disorder (maternal expressed emotions interaction)	909 European ancestry trios	NA	5q21.1	intergenic	rs13188771-A	0.17	2E-6	(maternal warmth)	4.24	[NR] unit decrease	Perlegen [429901]	N
1355	chr5	100979353	100979354	rs9327633	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls, 22,356 East Asian ancestry cases, 156,370 East Asian ancestry controls	NA	5q21.1		rs9327633-A	NR	1E-8		0.0387	[0.025-0.052] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1355	chr5	100994203	100994204	rs114175587	32372009	de Las Fuentes L	2020-05-05	Mol Psychiatry	Gene-educational attainment interactions in a multi-ancestry genome-wide meta-analysis identify novel blood pressure loci.	Pulse pressure x educational attainment (some college) interaction (2df)	27,617 European ancestry individuals with some college education, 20,253 European ancestry individuals without college education, 8,128 African ancestry individuals with some college education, 8,537 African ancestry individuals without college education, 1,138 Asian ancestry individuals with some college education, 10,214 Asian ancestry individuals without college education, 1,869 Hispanic/Latin American individuals with some college education, 3,276 Hispanic/Latin American individuals without college education	131,584 European ancestry individuals with some college education, 110,940 European ancestry individuals without college education, 1,494 African ancestry individuals with some college education, 5,704 African ancestry individuals without college education, 2,339 Asian ancestry individuals with some college education, 8,567 Asian ancestry individuals without college education, 4,133 Hispanic individuals with some college education, 7,498 Hispanic individuals without college education	5q21.1	SLCO4C1	rs114175587-T	NR	2E-8		3.84	[1.31-6.37] unit increase	Affymetrix, Illumina [~ 18800000] (imputed)	N
1355	chr5	100994203	100994204	rs114175587	32372009	de Las Fuentes L	2020-05-05	Mol Psychiatry	Gene-educational attainment interactions in a multi-ancestry genome-wide meta-analysis identify novel blood pressure loci.	Pulse pressure x educational attainment (some college) interaction (2df)	27,617 European ancestry individuals with some college education, 20,253 European ancestry individuals without college education, 8,128 African ancestry individuals with some college education, 8,537 African ancestry individuals without college education, 1,138 Asian ancestry individuals with some college education, 10,214 Asian ancestry individuals without college education, 1,869 Hispanic/Latin American individuals with some college education, 3,276 Hispanic/Latin American individuals without college education	131,584 European ancestry individuals with some college education, 110,940 European ancestry individuals without college education, 1,494 African ancestry individuals with some college education, 5,704 African ancestry individuals without college education, 2,339 Asian ancestry individuals with some college education, 8,567 Asian ancestry individuals without college education, 4,133 Hispanic individuals with some college education, 7,498 Hispanic individuals without college education	5q21.1	SLCO4C1	rs114175587-T	0.02	1E-7	(African)	4.121	[1.28-6.96] unit increase	Affymetrix, Illumina [~ 18800000] (imputed)	N
1356	chr5	101104879	101104880	rs6877543	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Isthmus-cingulate cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	5q21.1	NR	rs6877543-?		9E-6				Illumina [4322238] (imputed)	N
1356	chr5	101105875	101105876	rs115474981	32141793	Garman L	2020-03-06	Ocul Immunol Inflamm	Genome-Wide Association Study of Ocular Sarcoidosis Confirms HLA Associations and Implicates Barrier Function and Autoimmunity in African Americans.	Ocular sarcoidosis	260 African American cases, 1,551 African American controls	NA	5q21.1	NR	rs115474981-C	NR	8E-6		2.21	[1.56-3.13]	Illumina [13976150] (imputed)	N
1356	chr5	101105997	101105998	rs1479073	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	5q21.1	NR	rs1479073-C	0.310139	2E-8		0.037901208	[0.025-0.051] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1356	chr5	101105997	101105998	rs1479073	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	5q21.1	Intergenic	rs1479073-T	0.6881	2E-8		0.0173	[0.011-0.023] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
1356	chr5	101108683	101108684	rs1479074	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	5q21.1	Intergenic	rs1479074-T	0.3108	5E-8	(MTAG)	0.0135	[0.0086-0.0184] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1356	chr5	101110227	101110228	rs75171949	29527006	Warrier V	2018-03-12	Transl Psychiatry	Genome-wide analyses of self-reported empathy: correlations with autism, schizophrenia, and anorexia nervosa.	Empathy quotient	22,318 European ancestry males, 24,543 European ancestry females	NA	5q21.1	Metazoa_SRP	rs75171949-G	0.07849	7E-7	(males)	1.23	[0.74-1.72] unit decrease	Illumina [9955952] (imputed)	N
1356	chr5	101110297	101110298	rs354670	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	5q21.1	NR	rs354670-?	NR	3E-7		5.114	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1356	chr5	101123994	101123995	rs77460585	32693751	Keene KL	2020-07-22	Stroke	Genome-Wide Association Study Meta-Analysis of Stroke in 22 000 Individuals of African Descent Identifies Novel Associations With Stroke.	Stroke	3,734 African ancestry cases, 18,317 African ancestry controls	NA	5q21.1	OR7H2P	rs77460585-A	NR	4E-7		1.8	[1.60-2.02]	Affymetrix, Illumina [~ 16900000] (imputed)	N
1356	chr5	101123994	101123995	rs77460585	26859814	den Braber A	2016-02-09	Transl Psychiatry	Obsessive-compulsive symptoms in a large population-based twin-family sample are predicted by clinically based polygenic scores and by genome-wide SNPs.	Obsessive-compulsive symptoms	6,931 individuals	NA	5q21.1	LOC100420, OR7H2P	rs77460585-G	NR	4E-6		0.8668	unit increase	Affymetrix, Illumina, Perlegen [31265038] (imputed)	N
1356	chr5	101172786	101172787	rs1114783	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	5q21.1	NR	rs1114783-?	NR	1E-6				Affymetrix [NR]	N
1357	chr5	101212096	101212097	rs66779092	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	5q21.1	NR	rs66779092-A	0.177	5E-8	(IFNgamma_CXCL9_of_Monocytes)			Illumina [5084123] (imputed)	N
1357	chr5	101232943	101232944	rs138337556	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	5q21.1	SLCO6A1	rs138337556-G	0.0036	5E-9		1.56	[1.34-1.81]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1357	chr5	101273693	101273694	rs145510090	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 29,0641 European ancestry controls	NA	5q21.1	RN5S188	rs145510090-A	0.0500239	4E-10		0.16795465	[0.12-0.22] unit increase	Affymetrix [7288503] (imputed)	N
1358	chr5	101322035	101322036	rs57157059	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	5q21.1	NR	rs57157059-A	0.187	6E-7	(IFNgamma_CXCL9_of_Monocytes)			Illumina [5084123] (imputed)	N
1358	chr5	101385880	101385881	rs12054761	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Isthmus-cingulate cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	5q21.1	NR	rs12054761-?		6E-6				Illumina [4322238] (imputed)	N
1358	chr5	101392183	101392184	rs28535886	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Hippocampal volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	5q21.1	NR	rs28535886-?		8E-6				Illumina [4322238] (imputed)	N
1358	chr5	101394057	101394058	rs28530672	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Sub-cortical grey matter volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	5q21.1	NR	rs28530672-?		4E-6				Illumina [4322238] (imputed)	N
1358	chr5	101403585	101403586	rs6861497	23534349	Jeff JM	2013-03-28	Ann Hum Genet	Generalization of variants identified by genome-wide association studies for electrocardiographic traits in African Americans.	QRS duration	455 African American individuals	NA	5q21.1	intergenic	rs6861497-A		5E-6		2.34	[NR] ms increase	Illumina [> 930000]	N
1358	chr5	101441030	101441031	rs73177261	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Precuneus cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	5q21.1	NR	rs73177261-?		9E-6				Illumina [4322238] (imputed)	N
1359	chr5	101511736	101511737	rs17147130	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	5q21.1	NR	rs17147130-G	0.28	2E-6	(IFNgamma_CXCL9_of_Monocytes)			Illumina [5084123] (imputed)	N
1360	chr5	101620173	101620174	rs2548724	28566273	Scott RA	2017-05-31	Diabetes	An Expanded Genome-Wide Association Study of Type 2 Diabetes in Europeans.	Type 2 diabetes	up to 26,676 European ancestry cases, up to 132,532 European ancestry controls	up to 12,543 European ancestry cases, up to 66,458 European ancestry controls	5q21.1	NR	rs2548724-T	0.2554	6E-7		1.07	[1.04-1.10]	Affymetrix, Illumina [at least 11579618] (imputed)	N
1360	chr5	101636613	101636614	rs62372209	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	5q21.1	RN7SKP68	rs62372209-T	NR	4E-8		0.0159752	[0.01-0.022] unit increase	Affymetrix [321114] (imputed)	N
1360	chr5	101637657	101637657	rs111970895	30898391	Lawrenson K	2019-03-19	Gynecol Oncol	Genome-wide association studies identify susceptibility loci for epithelial ovarian cancer in east Asian women.	Epithelial ovarian cancer	3,238 East Asian ancestry cases, 4,083 East Asian ancestry controls	NA	5q21.1		rs111970895-?	NR	3E-7	(clearcell)	2.34		Illumina [11595112] (imputed)	N
1360	chr5	101662385	101662386	rs78162670	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	5q21.1	NR	rs78162670-G	0.064	4E-6	(IFNgamma_CXCL9_of_Monocytes)			Illumina [5084123] (imputed)	N
1360	chr5	101675581	101675582	rs77487268	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	5q21.1	NR	rs77487268-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
1360	chr5	101685643	101685644	rs116512981	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	5q21.1	NR	rs116512981-?	NR	2E-6		4.777	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1361	chr5	101726769	101726770	rs10073892	24468470	Zhang C	2013-12-26	Neurobiol Aging	Genetic susceptibility to accelerated cognitive decline in the US Health and Retirement Study.	Cognitive decline (age-related)	5,765 European ancestry individuals, 890 African American individuals	NA	5q21.1	SLCO6A1	rs10073892-?	NR	7E-7	(EA)	0.0126	[0.007616-0.01751] unit increase	Illumina [1530316]	N
1361	chr5	101750852	101750853	rs62369345	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	5q21.1	SLCO6A1	rs62369345-A	NR	4E-8		0.0156337	[0.01-0.021] unit increase	Affymetrix [319769] (imputed)	N
1361	chr5	101769725	101769726	rs6878284	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	5q21.1	NR	rs6878284-C	NR	2E-7		1.0638298	[NR]	Illumina [7158791] (imputed)	N
1361	chr5	101769725	101769726	rs6878284	23974872	Ripke S	2013-08-25	Nat Genet	Genome-wide association analysis identifies 13 new risk loci for schizophrenia.	Schizophrenia	5,001 European ancestry cases, 6,243 European ancestry controls, 8,832 cases, 12,067 controls	4,801 European ancestry cases, 4,741 European ancestry controls, 2,612 European and unknown ancestry cases, 15,021 European and unknown ancestry controls, 581 trios	5q21.1	SLCO6A1	rs6878284-C	0.363	9E-9		1.09	[1.06-1.12]	Affymetrix, Illumina [9871789]	N
1361	chr5	101780478	101780479	rs7734060	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	5q21.1	NR	rs7734060-?	NR	4E-9				Affymetrix [~ 8270000] (imputed)	N
1361	chr5	101816103	101816104	rs6884141	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	5q21.1		rs6884141-A	NR	3E-8		0.0117	[0.0076-0.0158] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
1361	chr5	101816103	101816104	rs6884141	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	5q21.1		rs6884141-A	NR	6E-11		0.0143	[0.01-0.0186] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1361	chr5	101837361	101837362	rs116454070	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	5q21.1	NR	rs116454070-T	0.066	7E-6	(IFNgamma_CXCL9_of_Monocytes)			Illumina [5084123] (imputed)	N
1362	chr5	101859316	101859317	rs1502844	19571808	Stefansson H	2009-07-01	Nature	Common variants conferring risk of schizophrenia.	Schizophrenia	2,663 European ancestry cases, 13,498 European ancestry controls	10,282 European ancestry cases, 21,093 European ancestry controls	5q21.1	SLCO6A1	rs1502844-C	NR	1E-6		1.09	[NR]	Illumina [314868]	N
1362	chr5	101889941	101889942	rs1875632	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	5q21.1	NR	rs1875632-?	NR	1E-14				Affymetrix [~ 8270000] (imputed)	N
1362	chr5	101915289	101915290	rs148104955	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Alcohol consumption x traumatic event in childhood (felt hated by family member) interaction	46,394 European ancestry individuals	NA	5q21.1		rs148104955-?	NR	2E-8		2.6306	[1.71-3.55] unit increase	Affymetrix [NR] (imputed)	N
1362	chr5	101946797	101946798	rs7705924	22412388	Kenny EE	2012-03-08	PLoS Genet	A genome-wide scan of Ashkenazi Jewish Crohn's disease suggests novel susceptibility loci.	Crohn's disease	737 Ashkenazi Jewish cases, 2,257  Ashkenazi Jewish controls	971 Ashkenazi Jewish cases, 2,124 Ashkenazi Jewish controls	5q21.1	SLCO6A1	rs7705924-G	0.066	2E-8		1.48	[1.17-1.87]	Affymetrix, Illumina [1060934] (imputed)	N
1362	chr5	101948323	101948324	rs3105481	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	5q21.1	LINC00492, LINC00491	rs3105481-A	NR	4E-9		0.0191696	[0.013-0.026] unit increase	Affymetrix [321114] (imputed)	N
1362	chr5	101963032	101963033	rs997999	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	5q21.1	NR	rs997999-?	NR	2E-11				Affymetrix [~ 8270000] (imputed)	N
1363	chr5	102034611	102034612	rs74566838	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	5q21.1	NR	rs74566838-G	0.0337972	3E-8		0.09609406	[0.062-0.13] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1363	chr5	102034611	102034612	rs74566838	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Trunk fat mass	3,399 whole genome sequenced individuals, 12,838 European ancestry individuals	10,667 European ancestry individuals	5q21.1	LINC00491	rs74566838-A	0.0534	4E-6		0.1369	[0.079-0.195] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1363	chr5	102048097	102048098	rs2545583	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	5q21.1		rs2545583-A	0.4	6E-13		7.21	z score increase	Affymetrix [9061022] (imputed)	N
1363	chr5	102048097	102048098	rs2545583	31600170	Teumer A	2019-10-10	JCI Insight	KCND3 potassium channel gene variant confers susceptibility to electrocardiographic early repolarization pattern.	Early cardiac repolarization	3,305 European ancestry cases, 36,151 European ancestry controls	NA	5q21.1	PAM	rs2545583-G	0.67	1E-6		1.1764705	[1.11-1.24]	Affymetrix, Illumina [up to 6976246] (imputed)	N
1363	chr5	102053557	102053558	rs4703019	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	5q21.1	NA	rs4703019-A	0.3914	5E-10		0.0102	[0.0071-0.0133] unit increase	NR [~ 27400000] (imputed)	N
1363	chr5	102077257	102077258	rs365188	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	5q21.1	NR	rs365188-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
1363	chr5	102077257	102077258	rs365188	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	5q21.1		rs365188-?	NR	7E-9				NR [~ 8900000] (imputed)	N
1363	chr5	102089174	102089175	rs450122	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	5q21.1	NR	rs450122-C	0.4365	7E-14				NR [9056863] (imputed)	N
1363	chr5	102093735	102093736	rs405752	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	5q21.1		rs405752-A	0.42	6E-13		7.19	z score increase	Affymetrix [9061022] (imputed)	N
1363	chr5	102100575	102100576	rs7729395	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	200,622 European ancestry individuals	NA	5q21.1	LINC00491	rs7729395-T	0.0493	3E-8		0.0232	[0.014-0.032] unit decrease	Affymetrix, Illumina [34064007] (imputed)	N
1363	chr5	102100575	102100576	rs7729395	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	5q21.1	PAM	rs7729395-T	0.0509409339093332	1E-17		0.1373	[0.11-0.17] unit increase	NR [5035015] (imputed)	N
1363	chr5	102100575	102100576	rs7729395	30046033	van Setten J	2018-07-25	Nat Commun	PR interval genome-wide association meta-analysis identifies 50 loci associated with atrial and atrioventricular electrical activity.	PR interval	92,340 European ancestry individuals	NA	5q21.1	PAM	rs7729395-T	0.05	1E-10		2.4	[1.67-3.13] ms increase	Affymetrix, Illumina [2712613] (imputed)	N
1364	chr5	102106532	102106533	rs2431532	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	5q21.1	NR	rs2431532-G	0.471	1E-8				NR [9056863] (imputed)	N
1364	chr5	102118384	102118385	rs2431320	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	5q21.1		rs2431320-?	NR	6E-9				NR [~ 8900000] (imputed)	N
1364	chr5	102125032	102125033	rs406761	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	5q21.1	NA	rs406761-T	0.6302	5E-10	(Female)	1.049	[1.03-1.06]	Affymetrix, Illumina [NR] (imputed)	N
1364	chr5	102128957	102128958	rs114555443	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	5q21.1	PAM	rs114555443-C	0.0567	2E-29		1.7354	[1.43-2.04] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1364	chr5	102143310	102143311	rs76177300	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	5q21.1	NR	rs76177300-A	0.062	2E-6	(IFNgamma_CXCL9_of_Monocytes)			Illumina [5084123] (imputed)	N
1364	chr5	102143310	102143311	rs76177300	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	5q21.1	NR	rs76177300-?	NR	1E-7		5.318	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1364	chr5	102155609	102155610	rs467897	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	5q21.1	PAM	rs467897-G	NR	9E-9		0.0192139	[0.013-0.026] unit decrease	Affymetrix [127266] (imputed)	N
1364	chr5	102167631	102167632	rs258243	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	5q21.1		rs258243-T	NR	1E-8		0.0126	[0.0083-0.0169] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
1364	chr5	102169793	102169794	rs80134320	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	5q21.1	Intergenic	rs80134320-T	0.0483	1E-9	(MTAG)	0.0254	[0.017-0.034] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1364	chr5	102169903	102169904	rs468987	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	5q21.1		rs468987-?	NR	5E-9				NR [9705931] (imputed)	N
1364	chr5	102169905	102169906	rs146003867	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q21.1	NR	rs146003867-G	0.01742	5E-13	(S100A6)	0.1167	NR unit increase	Illumina [1671387] (imputed)	N
1364	chr5	102169905	102169906	rs146003867	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q21.1	NR	rs146003867-G	0.01742	3E-9	(CORO1A)	0.07324	NR unit increase	Illumina [1671387] (imputed)	N
1364	chr5	102169905	102169906	rs146003867	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q21.1	NR	rs146003867-G	0.01742	2E-10	(S100A4)	0.08419	NR unit increase	Illumina [1671387] (imputed)	N
1364	chr5	102169905	102169906	rs146003867	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q21.1	NR	rs146003867-G	0.01742	1E-9	(GSTP1)	0.1674	NR unit increase	Illumina [1671387] (imputed)	N
1364	chr5	102169905	102169906	rs146003867	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q21.1	NR	rs146003867-G	0.01742	1E-15	(GSN)	0.05739	NR unit increase	Illumina [1671387] (imputed)	N
1364	chr5	102176460	102176461	rs13175330	29208002	Kim M	2017-12-06	Lipids Health Dis	EPHA6 rs4857055 C > T polymorphism associates with hypertension through triglyceride and LDL particle size in the Korean population.	Systolic blood pressure	2146 East Asian ancestry individuals	NA	5q21.1	PAM, LINC00491	rs13175330-?		7E-6				Affymetrix [394222]	N
1364	chr5	102176460	102176461	rs13175330	29208002	Kim M	2017-12-06	Lipids Health Dis	EPHA6 rs4857055 C > T polymorphism associates with hypertension through triglyceride and LDL particle size in the Korean population.	Diastolic blood pressure	2146 East Asian ancestry individuals	NA	5q21.1	PAM	rs13175330-?	NR	6E-7				Affymetrix [394222]	N
1365	chr5	102247915	102247916	rs72783884	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PAM	5,359 Icelandic ancestry individuals	NA	5q21.1		rs72783884-T	0.01025	4E-91		1.84024	[1.66-2.02] unit decrease	Illumina [7506463] (imputed)	N
1365	chr5	102247915	102247916	rs72783884	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Type 2 diabetes	approximately 459,000 European ancestry individuals	NA	5q21.1		rs72783884-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1365	chr5	102295503	102295504	rs2195272	33568662	Dashti HS	2021-02-10	Nat Commun	Genetic determinants of daytime napping and effects on cardiometabolic health.	Daytime nap	452,633 European ancestry individuals	541,333 European ancestry individuals	5q21.1	PAM	rs2195272-T		3E-14		0.007	[0.0052-0.0088] unit increase	Affymetrix [13304133] (imputed)	N
1365	chr5	102301357	102301358	rs74567345	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	5q21.1	NR	rs74567345-C	0.052	8E-6	(IFNgamma_CXCL9_of_Monocytes)			Illumina [5084123] (imputed)	N
1365	chr5	102301357	102301358	rs74567345	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	5q21.1	NR	rs74567345-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1365	chr5	102301357	102301358	rs74567345	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5q21.1		rs74567345-?	NR	8E-20				NR [~ 8900000] (imputed)	N
1365	chr5	102301357	102301358	rs74567345	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	5q21.1		rs74567345-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1365	chr5	102305064	102305065	rs17154889	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	5q21.1	NR	rs17154889-?	NR	2E-13				Affymetrix [~ 8270000] (imputed)	N
1365	chr5	102305064	102305065	rs17154889	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	5q21.1	NR	rs17154889-?	NR	2E-11				Affymetrix [~ 8270000] (imputed)	N
1365	chr5	102305064	102305065	rs17154889	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	5q21.1		rs17154889-?	NR	7E-16				NR [~ 8900000] (imputed)	N
1365	chr5	102313938	102313939	rs6889592	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Sleep duration	384,317 European ancestry individuals	NA	5q21.1		rs6889592-A	0.3324	1E-11		0.01754	[0.012-0.023] unit increase	Affymetrix, Illumina [10862567] (imputed)	N
1365	chr5	102318973	102318974	rs10463554	28892059	Chang D	2017-09-11	Nat Genet	A meta-analysis of genome-wide association studies identifies 17 new Parkinson's disease risk loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	5,851 European ancestry cases, 5,866 European ancestry controls	5q21.1	NR	rs10463554-T	NR	2E-7		1.0649627	[1.04-1.09]	Illumina [11933700] (imputed)	N
1365	chr5	102321904	102321905	rs56372231	30846698	Dashti HS	2019-03-07	Nat Commun	Genome-wide association study identifies genetic loci for self-reported habitual sleep duration supported by accelerometer-derived estimates.	Sleep duration	446,118 European ancestry individuals	47,180  adults, 10,554 children or adolescents	5q21.1	NR	rs56372231-T	NR	2E-11		0.888	unit increase	Affymetrix [14661600] (imputed)	N
1365	chr5	102327867	102327868	rs3776864	30846698	Dashti HS	2019-03-07	Nat Commun	Genome-wide association study identifies genetic loci for self-reported habitual sleep duration supported by accelerometer-derived estimates.	Sleep duration (short sleep)	106,192  European ancestry cases, 305,742 European ancestry controls	47,180  adults, 10,554 children or adolescents	5q21.1	PAM, PPIP5K2, GIN1, c5orf30	rs3776864-A	NR	2E-8		1.032		NR [14661600] (imputed)	N
1365	chr5	102331464	102331465	rs116782923	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PAM	5,359 Icelandic ancestry individuals	NA	5q21.1		rs116782923-T	0.04579	1E-126		1.00289	[0.92-1.09] unit decrease	Illumina [7506463] (imputed)	N
1365	chr5	102331464	102331465	rs116782923	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	5q21.1		rs116782923-T	NR	2E-15		0.2075	[0.16-0.26] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1365	chr5	102331464	102331465	rs116782923	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 29,0641 European ancestry controls	NA	5q21.1	PAM	rs116782923-T	0.052571	2E-15		0.20747322	[0.16-0.26] unit increase	Affymetrix [7288503] (imputed)	N
1365	chr5	102338738	102338739	rs78408340	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Treatment or medication use - metformin (UKB data field 20003_1140884600)	11,358 European ancestry cases, 444,918 European ancestry controls	NA	5q21.1		rs78408340-G	0.009491	9E-10		0.44	[0.3-0.58] unit increase	NR [11842647] (imputed)	N
1365	chr5	102338738	102338739	rs78408340	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Illnesses of father: Diabetes (UKB data field 20107_9)	37,943 European ancestry cases, 357,277 European ancestry controls	NA	5q21.1		rs78408340-G	0.009451	8E-11		0.27	[0.19-0.35] unit increase	NR [11842647] (imputed)	N
1365	chr5	102338738	102338739	rs78408340	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Diabetes mellitus (UKB data field 2443)	21,969 European ancestry cases, 433,048 European ancestry controls	NA	5q21.1		rs78408340-G	0.009423	1E-12		0.37	[0.27-0.47] unit increase	NR [11842647] (imputed)	N
1365	chr5	102338738	102338739	rs78408340	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	5q21.1		rs78408340-G	NR	5E-14		0.407	[0.3-0.51] unit increase	Affymetrix, Illumina [25845091] (imputed)	N
1365	chr5	102338738	102338739	rs78408340	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	5q21.1		rs78408340-G	NR	6E-10		0.052	[0.036-0.068] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1365	chr5	102338738	102338739	rs78408340	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Sex hormone-binding globulin levels	397,043 European ancestry individuals	NA	5q21.1		rs78408340-?	NR	2E-9		0.0610361	[0.04-0.082] unit decrease	NR [9800000] (imputed)	N
1365	chr5	102338738	102338739	rs78408340	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Height	458,235 European ancestry individuals	NA	5q21.1		rs78408340-?	NR	1E-14		0.0589923	[0.043-0.075] unit decrease	NR [9800000] (imputed)	N
1365	chr5	102338738	102338739	rs78408340	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	5q21.1	PAM	rs78408340-C	0.9905	6E-16		0.0786	[0.06-0.098] unit increase	Affymetrix [18391927] (imputed)	N
1365	chr5	102338738	102338739	rs78408340	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	244,730 European ancestry women	NA	5q21.1	PAM	rs78408340-C	0.991	5E-9		0.07	[0.045-0.095] unit increase	Affymetrix [18391927] (imputed)	N
1365	chr5	102338738	102338739	rs78408340	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	205,513 European ancestry men	NA	5q21.1	PAM	rs78408340-C	0.991	7E-9		0.09	[0.061-0.119] unit increase	Affymetrix [18391927] (imputed)	N
1365	chr5	102338738	102338739	rs78408340	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	5q21.1	NR	rs78408340-C	0.990302	1E-8		0.0240222	[0.016-0.032] unit increase	Affymetrix [16582909] (imputed)	N
1365	chr5	102338738	102338739	rs78408340	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	5q21.1	NR	rs78408340-C	0.990302	7E-8		0.0247302	[0.015-0.034] unit increase	Affymetrix [16582965] (imputed)	N
1365	chr5	102338738	102338739	rs78408340	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	5q21.1	NR	rs78408340-G	0.00955305	2E-10		0.10085	[0.07-0.132] unit decrease	NR [19129689] (imputed)	N
1365	chr5	102338738	102338739	rs78408340	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	5q21.1	PAM	rs78408340-G	0.0083	2E-24		1.47	[1.37-1.59]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1365	chr5	102338738	102338739	rs78408340	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	21,147 European ancestry cases, 434,460 European ancestry controls	NA	5q21.1	PAM	rs78408340-G	0.0096	4E-14		1.34	[1.24-1.43]	NR [10849711] (imputed)	N
1365	chr5	102338738	102338739	rs78408340	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5q21.1	NR	rs78408340-G	0.006	6E-22	(Peptidyl-glycine alpha-amidating monooxygenase, PAM.5620.13.3)	1.53	[1.22-1.84] unit decrease	Affymetrix [10572788] (imputed)	N
1365	chr5	102338810	102338811	rs35658696	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	5q21.1	NR	rs35658696-A	0.0397614	2E-9		0.09655065	[0.065-0.128] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1365	chr5	102338810	102338811	rs35658696	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5q21.1	PAM	rs35658696-A	0.950476	8E-11	(-98 ms)	0.0815711	[0.056-0.107] unit increase	Affymetrix [10000000] (imputed)	N
1365	chr5	102338810	102338811	rs35658696	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5q21.1	PAM	rs35658696-A	0.950476	8E-10	(-96 ms)	0.0769693	[0.052-0.102] unit increase	Affymetrix [10000000] (imputed)	N
1365	chr5	102338810	102338811	rs35658696	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5q21.1	PAM	rs35658696-A	0.950476	5E-12	(-106 ms)	0.0851102	[0.06-0.11] unit increase	Affymetrix [10000000] (imputed)	N
1365	chr5	102338810	102338811	rs35658696	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5q21.1	PAM	rs35658696-A	0.950476	2E-11	(-108 ms)	0.0833268	[0.058-0.108] unit increase	Affymetrix [10000000] (imputed)	N
1365	chr5	102338810	102338811	rs35658696	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5q21.1	PAM	rs35658696-A	0.950476	2E-10	(-100 ms)	0.0799052	[0.055-0.105] unit increase	Affymetrix [10000000] (imputed)	N
1365	chr5	102338810	102338811	rs35658696	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5q21.1	NR	rs35658696-G	0.046	2E-67	(Peptidyl-glycine alpha-amidating monooxygenase, PAM.5620.13.3)	0.97	[0.85-1.09] unit decrease	Affymetrix [10572788] (imputed)	N
1365	chr5	102338810	102338811	rs35658696	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	5q21.1	NR	rs35658696-?	NR	9E-7		4.902	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1365	chr5	102338810	102338811	rs35658696	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes (adjusted for BMI)	up to 48,286 European ancestry cases, up to 250,671 European ancestry controls	NA	5q21.1	PAM, PPIP5K2	rs35658696-G	0.051	4E-13		1.13	[1.09-1.17]	Affymetrix, Illumina [247470]	N
1365	chr5	102338810	102338811	rs35658696	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes (adjusted for BMI)	48,286 European ancestry cases, 250,671 European ancestry controls, 33,126 African American, East Asian, Hispanic/Latino or South Asian cases, 120,161 African American, East Asian, Hispanic/Latino or South Asian controls	NA	5q21.1	PAM, PPIP5K2	rs35658696-G	0.045	7E-15		1.13	[1.09-1.17]	Affymetrix, Illumina [247470]	N
1365	chr5	102338810	102338811	rs35658696	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes	up to 48,286 European ancestry cases, up to 250,671 European ancestry controls	NA	5q21.1	PAM, PPIP5K2	rs35658696-G	0.051	6E-12		1.13	[1.09-1.17]	Affymetrix, Illumina [247470]	N
1365	chr5	102338810	102338811	rs35658696	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes	48,286 European ancestry cases, 250,671 European ancestry controls, 33,126 African American, East Asian, Hispanic/Latino or South Asian cases, 120,161 African American, East Asian, Hispanic/Latino or South Asian controls	NA	5q21.1	PAM- PPIP5K2	rs35658696-G	0.045	1E-16		1.13	[1.10-1.17]	Affymetrix, Illumina [247470]	N
1365	chr5	102338810	102338811	rs35658696	23263489	Huyghe JR	2012-12-23	Nat Genet	Exome array analysis identifies new loci and low-frequency variants influencing insulin processing and secretion.	Insulinogenic index	up to 8,229 Finnish ancestry non-diabetic individuals	NA	5q21.1	PAM	rs35658696-G	0.053	2E-8		0.152	[0.099-0.205] unit decrease	Illumina [242071]	N
1365	chr5	102343904	102343904	rs112061423	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	5q21.1		rs112061423-TAATAA	NR	8E-10		0.0118	[0.0081-0.0155] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1365	chr5	102360746	102360747	rs17296280	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	5q21.1	PAM	rs17296280-C	NR	9E-6				Illumina [up to 11995908] (imputed)	N
1365	chr5	102361083	102361084	rs41300805	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5q21.1	NR	rs41300805-C	0.112	4E-77	(Peptidyl-glycine alpha-amidating monooxygenase, PAM.5620.13.3)	0.7	[0.62-0.78] unit increase	Affymetrix [10572788] (imputed)	N
1365	chr5	102365793	102365794	rs26431	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	5q21.1	PAM	rs26431-C	0.7025	2E-9		0.0621	[0.042-0.082] unit increase	NR [7784415] (imputed)	N
1365	chr5	102365793	102365794	rs26431	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling worry	372,869 European ancestry individuals	NA	5q21.1	NR	rs26431-C	0.30172	2E-8		5.636	unit increase	NR [10847151] (imputed)	N
1366	chr5	102418603	102418604	rs257309	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5q21.1	PAM	rs257309-G	0.352	4E-79	(Peptidyl-glycine alpha-amidating monooxygenase, PAM.5620.13.3)	0.47	[0.43-0.51] unit decrease	Affymetrix [10572788] (imputed)	N
1366	chr5	102422967	102422968	rs115505614	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	5q21.1	NR	rs115505614-T	0.058	1E-6	(IFNgamma_CXCL9_of_Monocytes)			Illumina [5084123] (imputed)	N
1366	chr5	102422967	102422968	rs115505614	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Type 2 diabetes	approximately 459,000 European ancestry individuals	NA	5q21.1		rs115505614-?	NR	4E-16				NR [~ 8900000] (imputed)	N
1366	chr5	102422967	102422968	rs115505614	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	5q21.1	NR	rs115505614-T	0.0501475	1E-17		0.0604564	[0.047-0.074] unit decrease	NR [19129689] (imputed)	N
1366	chr5	102422967	102422968	rs115505614	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	5q21.1	PAM	rs115505614-T	0.0499	1E-30		1.19	[1.15-1.22]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1366	chr5	102425314	102425315	rs13156446	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PAM	5,359 Icelandic ancestry individuals	NA	5q21.1		rs13156446-C	0.1424	5E-120		0.599487	[0.55-0.65] unit increase	Illumina [7506463] (imputed)	N
1366	chr5	102435259	102435260	rs34817	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	5q21.1		rs34817-G	0.695	5E-12		0.08	[-0.11--0.06] % decrease	Affymetrix [NR] (imputed)	N
1366	chr5	102454438	102454439	rs34781	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	5q21.1	NR	rs34781-T	0.3001	8E-14		0.0147	[0.011-0.019] unit decrease	NR [~ 27400000] (imputed)	N
1366	chr5	102461889	102461890	rs115246607	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	5q21.1	NR	rs115246607-?	NR	5E-7		5.043	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1366	chr5	102495527	102495528	rs257293	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PAM	5,359 Icelandic ancestry individuals	NA	5q21.1		rs257293-T	0.3112	2E-132		0.459901	[0.42-0.5] unit decrease	Illumina [7506463] (imputed)	N
1366	chr5	102498113	102498114	rs466325	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels (MTAG)	18,590 European ancestry individuals	NA	5q21.1		rs466325-?	NR	1E-6		4.87	Z score decrease	Affymetrix, Illumina [NR] (imputed)	N
1366	chr5	102498113	102498114	rs466325	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels	18,590 European ancestry individuals	NA	5q21.1		rs466325-?	NR	2E-6		0.08	[0.045-0.115] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1366	chr5	102498113	102498114	rs466325	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin I concentration (MTAG)	12,730 European ancestry individuals	NA	5q21.1		rs466325-?	NR	1E-6		4.85	Z score decrease	Affymetrix, Illumina [NR] (imputed)	N
1367	chr5	102537284	102537285	rs36046591	23263489	Huyghe JR	2012-12-23	Nat Genet	Exome array analysis identifies new loci and low-frequency variants influencing insulin processing and secretion.	Insulinogenic index	up to 8,229 Finnish ancestry non-diabetic individuals	NA	5q21.1	PPIP5K2	rs36046591-G	0.053	2E-8		0.152	[0.099-0.205] unit decrease	Illumina [242071]	N
1367	chr5	102537356	102537357	rs116234738	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	5q21.1	PPIP5K2	rs116234738-T	NR	1E-8		0.040175676	[0.026-0.054] unit decrease	Affymetrix [NR]	N
1367	chr5	102543877	102543878	rs28061	30804566	Lane JM	2019-02-25	Nat Genet	Biological and clinical insights from genetics of insomnia symptoms.	Insomnia symptoms (never/rarely vs. usually)	129,270 European ancestry cases, 108,357 European ancestry controls	17,140 European ancestry cases, 61,850 European ancestry controls	5q21.1	HISPPD1/C5orf30	rs28061-A	0.692042	1E-8		1.03	[1.02-1.04]	Affymetrix [14661600] (imputed)	N
1367	chr5	102543877	102543878	rs28061	30804566	Lane JM	2019-02-25	Nat Genet	Biological and clinical insights from genetics of insomnia symptoms.	Insomnia symptoms (never/rarely vs. sometimes/usually)	345,022 European ancestry cases, 108,357 European ancestry controls	17,140 European ancestry cases, 61,850 European ancestry controls	5q21.1	HISPPD1/C5orf30	rs28061-A	0.692042	2E-7		1.03	[1.02-1.04]	Affymetrix [14661600] (imputed)	N
1367	chr5	102558043	102558044	rs246915	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	5q21.1	PPIP5K2	rs246915-A	NR	2E-8		0.0173345	[0.011-0.023] unit decrease	Affymetrix [319769] (imputed)	N
1367	chr5	102558043	102558044	rs246915	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	5q21.1	PPIP5K2	rs246915-A	NR	3E-9		0.0182102	[0.012-0.024] unit decrease	Affymetrix [319769] (imputed)	N
1367	chr5	102559406	102559407	rs246914	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	5q21.1	NR	rs246914-C	NR	5E-8		0.01508	[0.0097-0.0205] unit decrease	Affymetrix [10847151] (imputed)	N
1367	chr5	102583867	102583868	rs152136	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	5q21.1		rs152136-G	NR	1E-8		0.0115	[0.0076-0.0154] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
1367	chr5	102583867	102583868	rs152136	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	5q21.1		rs152136-G	NR	3E-8		0.012	[0.0077-0.0163] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
1367	chr5	102586406	102586407	rs75432112	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	5q21.1	NR	rs75432112-A	0.055	1E-6	(IFNgamma_CXCL9_of_Monocytes)			Illumina [5084123] (imputed)	N
1367	chr5	102586406	102586407	rs75432112	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	5q21.1	NR	rs75432112-G	0.9517	5E-36		0.1344	[0.11-0.16] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
1367	chr5	102586406	102586407	rs75432112	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	5q21.1	NR	rs75432112-G	0.9536	6E-37		0.1319	[0.11-0.15] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1367	chr5	102586406	102586407	rs75432112	29358691	Bonas-Guarch S	2018-01-22	Nat Commun	Re-analysis of public genetic data reveals a rare X-chromosomal variant associated with type 2 diabetes.	Type 2 diabetes	up to 12,931 European ancestry cases, up to 57,196 European ancestry controls	NA	5q21.1	PAM	rs75432112-A	NR	4E-7		1.1985351		Affymetrix, Illumina [~ 13000000] (imputed)	N
1367	chr5	102587572	102587573	rs6876072	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	5q21.1	CTC-503K11.2	rs6876072-T	NR	1E-8		0.0172172	[0.011-0.023] unit decrease	Affymetrix [321114] (imputed)	N
1367	chr5	102595836	102595837	rs28157	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	5q21.1		rs28157-?	NR	5E-12				NR [~ 8900000] (imputed)	N
1367	chr5	102596719	102596720	rs26232	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	5q21.1		rs26232-T	NR	2E-21		0.0203	[0.016-0.024] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
1367	chr5	102596719	102596720	rs26232	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	5q21.1	C5orf30	rs26232-T	0.32215	9E-25		0.0224702	[0.018-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1367	chr5	102596719	102596720	rs26232	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q21.1	NR	rs26232-T	0.311671	7E-30				Affymetrix, Illumina [24246363] (imputed)	N
1367	chr5	102596719	102596720	rs26232	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q21.1	NR	rs26232-T	0.311732	3E-26				Affymetrix, Illumina [20825802] (imputed)	N
1367	chr5	102596719	102596720	rs26232	20453842	Stahl EA	2010-05-09	Nat Genet	Genome-wide association study meta-analysis identifies seven new rheumatoid arthritis risk loci.	Rheumatoid arthritis	5,539 European ancestry cases, 20,169 European ancestry controls	6,768 European ancestry cases, 8,806 European ancestry controls	5q21.1	C5orf30	rs26232-C	0.68	4E-8		1.14	[NR]	Affymetrix, Illumina [~ 2716259] (imputed)	N
1367	chr5	102596815	102596816	rs26233	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	5q21.1	NR	rs26233-T	0.321441	2E-28		0.021413	[0.018-0.025] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
1367	chr5	102597155	102597156	rs26234	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	5q21.1	C5orf30	rs26234-A	0.322139	1E-21		0.022613037	[0.018-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1367	chr5	102597291	102597292	rs39984	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis (ACPA-positive)	up to 9,585 European ancestry cases, up to 33,742 European ancestry controls	NA	5q21.1	GIN1, C5orf30	rs39984-?	0.68	3E-6		1.1420741		Illumina [129464] (imputed)	N
1367	chr5	102597291	102597292	rs39984	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis	up to 13,838 European ancestry cases, up to 33,742 European ancestry controls	NA	5q21.1	GIN1, C5ORF30	rs39984-?	0.68	9E-8		1.1373976		Illumina [129464] (imputed)	N
1367	chr5	102599389	102599390	rs376286	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	5q21.1	NR	rs376286-A	0.322104	4E-26		0.021768	[0.018-0.026] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
1367	chr5	102599625	102599626	rs434294	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	5q21.1		rs434294-G	NR	5E-11		0.0641	[0.045-0.083] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1367	chr5	102599625	102599626	rs434294	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hypothyroidism	30,155 European ancestry cases, 379,986 European ancestry controls, 1,114 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	5q21.1		rs434294-G	NR	3E-10		0.0683	[0.047-0.09] unit decrease	Affymetrix, Illumina [25801083] (imputed)	N
1367	chr5	102600523	102600524	rs2288789	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	5q21.1		rs2288789-A	NR	5E-14		0.0138	[0.01-0.017] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
1367	chr5	102600523	102600524	rs2288789	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	5q21.1	C5orf30	rs2288789-A	0.333875	9E-10		0.014344098	[0.0098-0.0189] unit decrease	Affymetrix [93095623] (imputed)	N
1367	chr5	102600523	102600524	rs2288789	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	5q21.1	C5orf30	rs2288789-A	0.333963	9E-11		0.015378509	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1367	chr5	102600523	102600524	rs2288789	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q21.1	NR	rs2288789-A	0.319249	1E-16				Affymetrix, Illumina [24332387] (imputed)	N
1367	chr5	102600523	102600524	rs2288789	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	5q21.1	NR	rs2288789-A	0.333231	3E-12		0.013686	[0.0099-0.0175] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1367	chr5	102600523	102600524	rs2288789	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	5q21.1		rs2288789-?	NR	5E-11				NR [~ 8900000] (imputed)	N
1367	chr5	102600523	102600524	rs2288789	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	5q21.1		rs2288789-?	NR	3E-20				NR [~ 8900000] (imputed)	N
1367	chr5	102603700	102603701	rs403214	33310728	Ha E	2020-12-11	Ann Rheum Dis	Large-scale meta-analysis across East Asian and European populations updated genetic architecture and variant-driven biology of rheumatoid arthritis, identifying 11 novel susceptibility loci.	Rheumatoid arthritis	14,361 European ancestry cases, 43,923 European ancestry controls, 8,267 East Asian ancestry cases, 244,741 East Asian ancestry controls	NA	5q21.1		rs403214-A	NR	4E-10		1.1	[1.06-1.13]	NR [13810676] (imputed)	N
1367	chr5	102605600	102605601	rs366437	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	5q21.1		rs366437-C	NR	4E-22		0.0207	[0.017-0.025] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
1367	chr5	102608923	102608924	rs2561477	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	5q21.1	C5orf30	rs2561477-A	NR	6E-10		0.0946137	[0.016-0.174] unit decrease	Illumina [8380626] (imputed)	N
1367	chr5	102608923	102608924	rs2561477	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	5q21.1	C5orf30	rs2561477-A	0.32	5E-10	(EA)	0.10385	[0.071-0.137] unit decrease	Illumina [8380626] (imputed)	N
1367	chr5	102608923	102608924	rs2561477	24532676	Kim K	2014-02-14	Ann Rheum Dis	High-density genotyping of immune loci in Koreans and Europeans identifies eight new rheumatoid arthritis risk loci.	Rheumatoid arthritis (ACPA-positive)	2,234 Korean ancestry cases, 7,065 Korean ancestry controls, 10,288 European ancestry cases, 35,502 European ancestry controls	NA	5q21.1	C5orf30	rs2561477-G	0.69	1E-9		1.1111112	[1.08-1.15]	Illumina [133816] (imputed)	N
1367	chr5	102608923	102608924	rs2561477	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	5q21.1	C5orf30	rs2561477-G	0.69	1E-10		1.09	[1.06-1.12]	Affymetrix, Illumina [up to 9739303] (imputed)	N
1367	chr5	102608923	102608924	rs2561477	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	5q21.1	C5orf30	rs2561477-G	0.68	2E-11	(EA)	1.11	[1.08-1.14]	Affymetrix, Illumina [up to 9739303] (imputed)	N
1367	chr5	102608923	102608924	rs2561477	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis (ACPA-positive)	up to 9,585 European ancestry cases, up to 33,742 European ancestry controls	NA	5q21.1	GIN1	rs2561477-?	NR	9E-8				Illumina [129464] (imputed)	N
1367	chr5	102608923	102608924	rs2561477	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis	up to 13,838 European ancestry cases, up to 33,742 European ancestry controls	NA	5q21.1	GIN1	rs2561477-?	NR	7E-10				Illumina [129464] (imputed)	N
1367	chr5	102620107	102620108	rs146172211	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	5q21.1	PAM, GIN1, PPIP5K2	rs146172211-?		2E-10				Affymetrix, Illumina [NR] (imputed)	N
1367	chr5	102622452	102622453	rs1991797	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	5q21.1		rs1991797-T	0.329268	2E-14		0.018393	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1367	chr5	102622452	102622453	rs1991797	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	5q21.1		rs1991797-T	0.329276	3E-9		0.014135189	[0.0095-0.0188] unit increase	Affymetrix [93095623] (imputed)	N
1367	chr5	102622452	102622453	rs1991797	32581359	Saevarsdottir S	2020-06-24	Nature	FLT3 stop mutation increases FLT3 ligand level and risk of autoimmune thyroid disease.	Autoimmune thyroid disease	30,234 European ancestry cases, 724,172 European ancestry controls	NA	5q21.1	C5orf30	rs1991797-G	0.678	5E-11		1.0638298	[NR]	Affymetrix, Illumina [42900000] (imputed)	N
1367	chr5	102622452	102622453	rs1991797	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	5q21.1	C5orf30	rs1991797-T	0.328168	5E-12		0.06727845	[0.048-0.086] unit decrease	Affymetrix [7288503] (imputed)	N
1367	chr5	102622452	102622453	rs1991797	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	5q21.1	C5orf30	rs1991797-T	0.3254	7E-9		0.012005738	[0.0079-0.0161] unit increase	Illumina [9339358] (imputed)	N
1367	chr5	102623314	102623315	rs148257233	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Verbal-numerical reasoning	171,304 British ancestry individuals	NA	5q21.1		rs148257233-?	NR	3E-8				NR [7857346] (imputed)	N
1367	chr5	102623314	102623315	rs148257233	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	5q21.1	NR	rs148257233-?	NR	2E-7		5.214	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1367	chr5	102627354	102627355	rs187580	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	5q21.1	Intergenic	rs187580-T	0.7689	4E-8	(MTAG)	0.0116	[0.0075-0.0157] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1367	chr5	102627354	102627355	rs187580	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	5q21.1		rs187580-T	0.7671	4E-10		0.0104	[0.0071-0.0137] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1367	chr5	102627354	102627355	rs187580	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling worry	372,869 European ancestry individuals	NA	5q21.1	PAM	rs187580-T	0.230751	2E-10		6.364	unit increase	NR [10847151] (imputed)	N
1368	chr5	102660399	102660400	rs12187443	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	5q21.1	NR	rs12187443-T	0.6681	2E-10		1.041	[1.03-1.05]	Affymetrix, Illumina [NR] (imputed)	N
1368	chr5	102660399	102660400	rs12187443	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	5q21.1	C5orf30	rs12187443-T	0.67	2E-12		0.0088	[0.0063-0.0113] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
1368	chr5	102677919	102677920	rs391851	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Autoimmune traits	approximately 459,000 European ancestry individuals	NA	5q21.1		rs391851-?	NR	4E-12				NR [~ 8900000] (imputed)	N
1368	chr5	102678072	102678073	rs391236	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	5q21.1	NR	rs391236-G	NR	9E-9		0.01494	[0.0098-0.02] unit decrease	Affymetrix [10847151] (imputed)	N
1368	chr5	102681380	102681381	rs526231	26394269	Cordell HJ	2015-09-22	Nat Commun	International genome-wide meta-analysis identifies new primary biliary cirrhosis risk loci and targetable pathogenic pathways.	Primary biliary cholangitis	2,764 European ancestry cases, 10,475 European ancestry controls	3,716 European ancestry cases,  4,261 European ancestry controls	5q21.1	PAM, EIF3KP1, GIN1, PPIP5K2, C5orf30	rs526231-C		1E-8		1.1494253	[1.08-1.23]	Illumina [1143634] (imputed)	N
1368	chr5	102682144	102682145	rs76160968	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	5q21.1	NR	rs76160968-A	0.0347913	1E-10		0.11001364	[0.076-0.144] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1368	chr5	102682144	102682145	rs76160968	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	5q21.1	Intergenic	rs76160968-A	0.9505	2E-13	(MTAG)	0.0281	[0.021-0.036] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1368	chr5	102682144	102682145	rs76160968	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	5q21.1	Intergenic	rs76160968-A	0.9479	5E-15	(MTAG)	0.0404	[0.03-0.051] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1368	chr5	102682144	102682145	rs76160968	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	5q21.1	NR	rs76160968-A	NR	9E-9		5.752	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1368	chr5	102682144	102682145	rs76160968	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	5q21.1	ENSG00000250567	rs76160968-A	NR	7E-9		0.041001562	[0.027-0.055] unit decrease	Affymetrix [NR]	N
1368	chr5	102698450	102698451	rs148871886	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Diastolic blood pressure change trajectory	13,137 European ancestry individuals	2,451 European ancestry individuals	5q21.1	NR	rs148871886-T	0.9391	1E-6		0.1278	[0.077-0.179] mmHg increase	Affymetrix, Illumina [NR] (imputed)	N
1368	chr5	102705942	102705969	rs755015434	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	5q21.1	CTD-2154H6.1	rs755015434-TAG	NR	3E-8		0.0178519	[0.012-0.024] unit decrease	Affymetrix [319769] (imputed)	N
1368	chr5	102705942	102705969	rs755015434	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	5q21.1	CTD-2154H6.1	rs755015434-TAG	NR	5E-9		0.0188763	[0.013-0.025] unit decrease	Affymetrix [319769] (imputed)	N
1368	chr5	102711435	102711436	rs7733998	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	5q21.1	NR	rs7733998-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
1368	chr5	102711435	102711436	rs7733998	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	5q21.1	NR	rs7733998-?	NR	2E-11				Affymetrix [~ 8270000] (imputed)	N
1368	chr5	102711524	102711524	rs11436384	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	5q21.1	CTD-2154H6.1	rs11436384-AC	NR	2E-10		0.0204097	[0.014-0.027] unit decrease	Affymetrix [321114] (imputed)	N
1368	chr5	102711524	102711524	rs11436384	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	5q21.1	CTD-2154H6.1	rs11436384-AC	NR	2E-9		0.0192027	[0.013-0.025] unit decrease	Affymetrix [321169] (imputed)	N
1368	chr5	102722612	102722613	rs56047520	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	5q21.1	C5orf30	rs56047520-T	0.754	4E-11		0.0091	[0.0064-0.0118] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
1368	chr5	102725094	102725095	rs9327881	24529757	Xie T	2014-01-17	Neurobiol Aging	Genome-wide association study combining pathway analysis for typical sporadic amyotrophic lateral sclerosis in Chinese Han populations.	Amyotrophic lateral sclerosis (sporadic)	250 Han Chinese ancestry cases, 250 Han Chinese ancestry controls	NA	5q21.1	NUDT12	rs9327881-?	0.86	5E-9				Illumina [859311]	N
1368	chr5	102726072	102726073	rs74944275	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	5q21.1		rs74944275-T	0.0433	4E-11		0.0231	[0.016-0.03] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1368	chr5	102726072	102726073	rs74944275	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	5q21.1	Intergenic	rs74944275-T	0.0433	7E-15	(MTAG)	0.0254	[0.019-0.032] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1368	chr5	102726072	102726073	rs74944275	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	5q21.1	Intergenic	rs74944275-T	0.0454	8E-11		0.0445	[0.031-0.058] unit increase	Affymetrix, Illumina [10100000] (imputed)	N
1368	chr5	102726072	102726073	rs74944275	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	5q21.1	ENSG00000250567	rs74944275-T	NR	2E-8		5.609	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1368	chr5	102726072	102726073	rs74944275	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	5q21.1	ENSG00000250567	rs74944275-T	NR	4E-11		0.049698435	[0.035-0.064] unit increase	Affymetrix [NR]	N
1368	chr5	102726571	102726572	rs17155292	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	5q21.1		rs17155292-T	NR	8E-7		1.1207	[0.69-1.56] unit increase	Illumina [NR] (imputed)	N
1368	chr5	102759657	102759658	rs17155315	23166209	Smith JG	2012-11-19	Circ Cardiovasc Genet	Impact of ancestry and common genetic variants on QT interval in African Americans.	QT interval	13,105 African American individuals	NA	5q21.2	NR	rs17155315-G	0.63	7E-6		4.73	[2.69-6.77] unit increase	Affymetrix, Illumina [2800000] (imputed)	N
1369	chr5	102764047	102764048	rs2099077	23400010	Del-Aguila JL	2013-02-12	Pharmacogenomics J	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NA	5q21.2	NUDT12	rs2099077-A	0.29	8E-6	(AA-triglyceride response)	16.53	[9.26-23.8] mg/dL decrease	Affymetrix, Illumina [> 2000000] (imputed)	N
1369	chr5	102882316	102882317	rs6596534	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	5q21.2	NR	rs6596534-?	NR	1E-6		4.858	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1370	chr5	102903642	102903643	rs74692061	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5q21.2	NUDT12	rs74692061-G	0.157	3E-28	(Peroxisomal NADH pyrophosphatase NUDT12, NUDT12.13947.371.3)	0.38	[0.32-0.44] unit decrease	Affymetrix [10572788] (imputed)	N
1370	chr5	102913287	102913288	rs113322056	29555444	Hamer MA	2018-03-16	J Invest Dermatol	Facial Wrinkles in Europeans: a Genome-Wide Association Study.	Facial wrinkles	3,513 north-western European ancestry individuals	599 north-western European ancestry individuals	5q21.2	NR	rs113322056-A	0.96	3E-6		4.64	[NR] z score increase	Illumina [9009554] (imputed)	N
1370	chr5	102921165	102921166	rs294039	25240745	Lopez S	2014-09-18	Mitochondrion	A genome-wide association study in the genetic analysis of idiopathic thrombophilia project suggests sex-specific regulation of mitochondrial DNA levels.	Mitochondrial DNA levels	173 European ancestry males and 213 European ancestry females from 21 families	NA	5q21.2	NUDT12	rs294039-?	NR	5E-6			[NR]	Illumina [283437]	N
1370	chr5	102925838	102925839	rs11242496	21685187	Siedlinski M	2011-06-16	Thorax	Genome-wide association study of smoking behaviours in patients with COPD.	Age at smoking initiation in chronic obstructive pulmonary disease	3,397 European ancestry cases	NA	5q21.2	NUDT12	rs11242496-A	0.3	2E-6		0.043	unit increase	Illumina [~ 6300000] (imputed)	N
1370	chr5	102933005	102933006	rs182505594	34469433	Ashvetiya T	2021-09-01	PLoS One	Identification of novel genetic susceptibility loci for thoracic and abdominal aortic aneurysms via genome-wide association study using the UK Biobank Cohort.	Abdominal aortic aneurysm	1,363 European, Indian, Caribbean, African ancestry cases, 27,260  European, Indian, Caribbean, African ancestry controls	NA	5q21.2		rs182505594-?	NR	2E-7		2.43292		NR [NR] (imputed)	N
1370	chr5	102948184	102948185	rs2052483	35232999	Garcia-Etxebarria K	2022-03-01	Sci Rep	Local genetic variation of inflammatory bowel disease in Basque population and its effect in risk prediction.	Inflammatory bowel disease	498 European ancestry cases, 935 European ancestry controls	NA	5q21.2		rs2052483-T	0.214	3E-6		1.6		Illumina [5411567] (imputed)	N
1370	chr5	102948184	102948185	rs2052483	35232999	Garcia-Etxebarria K	2022-03-01	Sci Rep	Local genetic variation of inflammatory bowel disease in Basque population and its effect in risk prediction.	Crohn's disease	284 European ancestry cases, 935 European ancestry controls	NA	5q21.2		rs2052483-T	0.214	5E-6		1.8		Illumina [5411261] (imputed)	N
1370	chr5	102978476	102978477	rs75087282	33012170	Lanfear DE	2020-10-04	Circ Heart Fail	Polygenic Score for Beta-Blocker Survival Benefit in European Ancestry Patients with Reduced Ejection Fraction Heart Failure.	Beta blocker survival benefit in heart failure with reduced ejection fraction (time to all cause mortality x beta blocker interaction)	248 European ancestry individuals		5q21.2	intergenic	rs75087282-?		2E-6				Affymetrix [7000000] (imputed)	N
1370	chr5	102982491	102982492	rs76430606	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	5q21.2		rs76430606-G	0.09	2E-10		6.38	z score increase	Affymetrix [9061022] (imputed)	N
1370	chr5	102983293	102983294	rs1288869	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5q21.2	C5orf30	rs1288869-?	NR	3E-6	(TAG 60:12)	0.24354582	[0.14-0.35] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1370	chr5	103004292	103004293	rs3909337	34387878	Kim KY	2021-08-13	Hepatology	Genome-wide association of individual vulnerability with alcoholic liver disease: A Korean Genome and Epidemiology Study.	Alcohol-associated liver disease in light drinkers	1,379 Korean ancestry cases, 13,132 Korean ancestry controls	NA	5q21.2		rs3909337-?	NR	3E-6		0.7569	[0.6732-0.8509]	Affymetrix [7975321] (imputed)	N
1371	chr5	103022794	103022795	rs500141	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Measles	38,219 European ancestry cases, 47,279 European ancestry controls	NA	5q21.2	NR	rs500141-?	NR	9E-7		0.073	[0.044-0.102] unit decrease	Illumina [at least 560000] (imputed)	N
1372	chr5	103155837	103155838	rs114429104	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting free cholesterol in small LDL	4,734 individuals	NA	5q21.2		rs114429104-T	0.033180078	5E-8		0.325782	[0.21-0.44] mmol/l increase	Illumina [7701709] (imputed)	N
1373	chr5	103350471	103350472	rs79072042	30294719	Zeng Y	2018-08-24	JAMA Netw Open	Sex Differences in Genetic Associations With Longevity.	Longevity	564 Han Chinese ancestry male centenarian cases, 1,614 Han Chinese ancestry female centenarian cases, 773 Han Chinese ancestry male middle-aged controls, 1,526 Han Chinese ancestry female middle-aged controls	NA	5q21.2	NUDT12	rs79072042-?	0.91	7E-6	(male)	1.8115942	[1.39-2.33]	Illumina [5595657] (imputed)	N
1373	chr5	103380717	103380718	rs72773267	29678681	Matana A	2018-04-18	Genomics	Genome-wide meta-analysis identifies novel gender specific loci associated with thyroid antibodies level in Croatians.	Plasma anti-thyroglobulin and anti-thyroid peroxidase levels (bivariate analysis)	up to 1,596 Croatian ancestry women, up to 1,033 Croatian ancestry men	NA	5q21.2	NUDT12	rs72773267-?	NR	4E-6	(women)	0.024	[0.014-0.034] unit increase	Illumina [5527232] (imputed)	N
1374	chr5	103425504	103425505	rs13190616	30926877	Brcic L	2019-03-29	Sci Rep	Genome-wide association analysis suggests novel loci underlying thyroid antibodies in Hashimoto's thyroiditis.	Anti-thyroid peroxidase (TPOAb) and anti-thyroglobulin (TgAb) levels in Hashimoto's thyroiditis	405 European ancestry cases	NA	5q21.2	RP11-138J23.1, NUDT12	rs13190616-C	0.344	2E-6				Illumina [6007542] (imputed)	N
1374	chr5	103467630	103467631	rs13188649	33594131	Donati G	2021-02-16	Sci Rep	Evidence for specificity of polygenic contributions to attainment in English, maths and science during adolescence.	Academic attainment (English)	5,983 European ancestry adolescents	NA	5q21.2	NUDT12	rs13188649-T	NR	2E-6		0.356	[0.21-0.5] unit increase	Illumina [6319684] (imputed)	N
1374	chr5	103533328	103533329	rs17400865	32121467	Adewuyi EO	2020-02-29	Genes (Basel)	Shared Molecular Genetic Mechanisms Underlie Endometriosis and Migraine Comorbidity.	Endometriosis or migraine	17,054 European and Japanese ancestry endometriosis cases, 29,208 European ancestry migraine cases, 191,858 European and Japanese ancestry controls, 172,931 European ancestry controls	NA	5q21.2	NR	rs17400865-T	NR	3E-6	(random effect)	1.06	NR	NR [6904914] (imputed)	N
1375	chr5	103622555	103622556	rs184033309	30487263	Pollack S	2018-11-28	Diabetes	Multiethnic Genome-wide Association Study of Diabetic Retinopathy using Liability Threshold Modeling of Duration of Diabetes and Glycemic Control.	Diabetic retinopathy (all NPDR and PDR)	1,079 European ancestry cases, 1,970 European ancestry controls, 911 African American cases, 941 African American controls	7,178 East Asian ancestry cases, 6,525 East Asian ancestry controls, 214 South East Asian ancestry cases, 557 South East Asian ancestry controls, 315 South Asian ancestry cases, 669 South Asian ancestry controls, 8,205 European ancestry cases, 7,713 European ancestry controls, 1,470 Hispanic cases, 1,240 Hispanic controls	5q21.2	NR	rs184033309-?	NR	2E-6	(AA)	3.030303	[NR]	Affymetrix, Illumina [NR] (imputed)	N
1375	chr5	103671866	103671867	rs349588	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Major depressive disorder (MTAG)	at least 170,756 European ancestry cases, at least 329,443 European ancestry controls	NA	5q21.2	NR	rs349588-A	0.6291	1E-11		0.029439865	[0.021-0.038] unit decrease	NR [NR]	N
1375	chr5	103671866	103671867	rs349588	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Attention deficit hyperactivity disorder (MTAG)	at least 19,099 European ancestry cases, at least 34,194 European ancestry controls	2,726 European ancestry cases, 16,299 European ancestry controls	5q21.2	NR	rs349588-A	0.6402	1E-8		0.07392576	[0.048-0.099] unit decrease	NR [NR]	N
1376	chr5	103684786	103684787	rs7716818	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Neuropsychiatric disorders	19,099 European ancestry attention deficit hyperactivity disorder cases, 18,381 European ancestry autism spectrum disorder cases, 20,352 European ancestry bipolar disorder cases, 170,756 European ancestry major depressive disorder cases, 33,640 European ancestry schizophrenia cases, 466,420 European ancestry controls	NA	5q21.2	NR	rs7716818-A	NR	2E-10		6.392	NR z score increase	NR [NR]	N
1376	chr5	103690315	103690316	rs1442118	31754133	Singh S	2019-11-21	Sci Rep	Genome Wide Analysis Approach Suggests Chromosome 2 Locus to be Associated with Thiazide and Thiazide Like-Diuretics Blood Pressure Response.	Systolic blood pressure response to thiazide and thiazide-like diuretics in hypertension	290 African American individuals, 397 European ancestry individuals	NA	5q21.2	RAB9BP1	rs1442118-A	NR	2E-8	(EA)	3.89	NR unit increase	Illumina [NR] (imputed)	N
1376	chr5	103690315	103690316	rs1442118	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	5q21.2	NUDT12	rs1442118-A	NR	8E-6		1.0668	NR	Affymetrix, Illumina [8278136] (imputed)	N
1376	chr5	103692321	103692322	rs10067176	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Subjective well-being	298,420 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	5q21.2	NR	rs10067176-A	0.2297	7E-6		0.0142	[0.008-0.0204] unit increase	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
1376	chr5	103696429	103696430	rs2896539	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs2896539-?	NR	4E-8				NR [NR]	N
1376	chr5	103698727	103698728	rs2963222	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs2963222-?	NR	3E-8				NR [NR]	N
1376	chr5	103719234	103719235	rs2919980	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	5q21.2	NR	rs2919980-C	0.51412977414225	5E-8		0.006978298	[0.0045-0.0095] unit increase	NR [NR]	N
1376	chr5	103723454	103723455	rs1530303	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs1530303-?	NR	1E-8				NR [NR]	N
1376	chr5	103725069	103725070	rs6596572	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	5q21.2	RP11-6N13.1	rs6596572-A	0.4923	2E-8		0.011281391	[0.0073-0.0152] unit decrease	Affymetrix [up to 18485882] (imputed)	N
1376	chr5	103729261	103729262	rs4510551	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs4510551-?	NR	7E-9				NR [NR]	N
1376	chr5	103733249	103733250	rs2403304	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Tea consumption	336,898 European ancestry individuals	39,924 European ancestry individuals	5q21.2	RAB9BP1	rs2403304-T	0.6282	1E-6		0.0075	[0.0044-0.0106] unit increase	Affymetrix [~ 7740000] (imputed)	N
1376	chr5	103736621	103736622	rs35949602	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs35949602-?	NR	3E-9				NR [NR]	N
1376	chr5	103736801	103736802	rs13162928	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs13162928-?	NR	5E-9				NR [NR]	N
1376	chr5	103737889	103737890	rs13181679	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs13181679-?	NR	3E-8				NR [NR]	N
1376	chr5	103741965	103741966	rs13166408	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs13166408-?	NR	2E-9				NR [NR]	N
1376	chr5	103743731	103743732	rs55649128	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs55649128-?	NR	9E-9				NR [NR]	N
1376	chr5	103743731	103743732	rs55649128	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	5q21.2		rs55649128-?	NR	2E-22		0.0271	unit increase	NR [NR]	N
1376	chr5	103745043	103745044	rs13177473	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs13177473-?	NR	8E-9				NR [NR]	N
1376	chr5	103745823	103745824	rs6882578	31168069	Ward J	2019-06-05	Mol Psychiatry	The genomic basis of mood instability: identification of 46 loci in 363,705 UK Biobank participants, genetic correlation with psychiatric disorders, and association with gene expression and function.	Mood instability	157,039 European ancestry cases, 206,666 European ancestry controls	NA	5q21.2	RP11-6N13.1	rs6882578-?	NR	2E-8		0.00641244	[0.0042-0.0087] unit decrease	Affymetrix [NR] (imputed)	N
1376	chr5	103745823	103745824	rs6882578	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	5q21.2	NR	rs6882578-C	0.510580050840398	1E-8		0.0065083406	[0.0043-0.0088] unit increase	NR [NR]	N
1376	chr5	103745823	103745824	rs6882578	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	5q21.2	NR	rs6882578-C	0.510580050840398	1E-8		0.008470569	[0.0056-0.0114] unit increase	NR [NR]	N
1376	chr5	103750803	103750804	rs1583953	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs1583953-?	NR	4E-9				NR [NR]	N
1376	chr5	103751464	103751465	rs72776989	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs72776989-?	NR	4E-9				NR [NR]	N
1376	chr5	103757004	103757005	rs768792	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs768792-?	NR	8E-9				NR [NR]	N
1376	chr5	103758741	103758742	rs1372500	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs1372500-?	NR	2E-9				NR [NR]	N
1376	chr5	103758741	103758742	rs1372500	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder	16,823 European ancestry cases, 25,632 European ancestry controls	NA	5q21.2		rs1372500-?	NR	4E-10		0.94971	[0.93-0.97]	NR [NR]	N
1376	chr5	103766153	103766154	rs2028526	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs2028526-?	NR	2E-8				NR [NR]	N
1376	chr5	103766153	103766154	rs2028526	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	5q21.2	NR	rs2028526-C	0.349	5E-7		0.0062	[0.0038-0.0086] unit increase	NR [7666894] (imputed)	N
1376	chr5	103769680	103769681	rs876392	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs876392-?	NR	2E-8				NR [NR]	N
1376	chr5	103769980	103769981	rs10464005	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Neuropsychiatric disorders	19,099 European ancestry attention deficit hyperactivity disorder cases, 18,381 European ancestry autism spectrum disorder cases, 20,352 European ancestry bipolar disorder cases, 170,756 European ancestry major depressive disorder cases, 33,640 European ancestry schizophrenia cases, 466,420 European ancestry controls	NA	5q21.2	NR	rs10464005-A	NR	2E-9		5.982	NR z score increase	NR [NR]	N
1376	chr5	103771205	103771206	rs1442111	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs1442111-?	NR	8E-9				NR [NR]	N
1376	chr5	103771887	103771888	rs920623	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs920623-?	NR	7E-9				NR [NR]	N
1376	chr5	103783800	103783801	rs76025409	33893285	Guindo-Martinez M	2021-04-23	Nat Commun	The impact of non-additive genetic associations on age-related complex diseases.	Major depressive disorder	7,264 European ancestry cases, 49,373 European ancestry controls	NA	5q21.2		rs76025409-C	0.3653696	3E-8		1.11		Affymetrix [15589182] (imputed)	N
1376	chr5	103786486	103786487	rs10076888	33830993	Johnston KJA	2021-04-08	PLoS Genet	Sex-stratified genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	387,649 British ancestry individuals	NA	5q21.2	RP11-6N13.1	rs10076888-?	NR	1E-8			[NR]	NR [NR] (imputed)	N
1376	chr5	103787167	103787168	rs147831713	33830993	Johnston KJA	2021-04-08	PLoS Genet	Sex-stratified genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	387,649 British ancestry individuals	NA	5q21.2	RP11-6N13.1	rs147831713-?	NR	1E-8			[NR]	NR [NR] (imputed)	N
1376	chr5	103787167	103787168	rs147831713	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	ADHD vs anorexia nervosa (ordinary least squares (OLS))	19,099 ADHD cases, 16,992 anorexia nervosa cases	NA	5q21.2		rs147831713-?	NR	3E-10		0.0225	NR unit increase	NR [5496413] (imputed)	N
1377	chr5	103816654	103816655	rs12186738	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking initiation	842,717 European ancestry individuals	NA	5q21.2	NUDT12, RAB9BP1	rs12186738-T		1E-8		0.973	[NR]	Affymetrix [up to 79000000] (imputed)	N
1377	chr5	103817314	103817315	rs13166522	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs13166522-?	NR	2E-9				NR [NR]	N
1377	chr5	103818411	103818412	rs4235642	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs4235642-?	NR	2E-8				NR [NR]	N
1377	chr5	103818411	103818412	rs4235642	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	5q21.2	NR	rs4235642-A	0.380716	2E-9		0.043215998	[0.029-0.057] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1377	chr5	103822035	103822036	rs10040923	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs10040923-?	NR	4E-8				NR [NR]	N
1377	chr5	103827657	103827658	rs67909927	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs67909927-?	NR	4E-8				NR [NR]	N
1377	chr5	103832093	103832094	rs7706513	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs7706513-?	NR	4E-8				NR [NR]	N
1377	chr5	103836994	103836995	rs13165289	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs13165289-?	NR	4E-8				NR [NR]	N
1377	chr5	103838555	103838556	rs11747766	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs11747766-?	NR	1E-8				NR [NR]	N
1377	chr5	103841271	103841272	rs13187104	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs13187104-?	NR	2E-8				NR [NR]	N
1377	chr5	103843516	103843517	rs11958220	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs11958220-?	NR	2E-8				NR [NR]	N
1377	chr5	103847568	103847569	rs11747125	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs11747125-?	NR	5E-8				NR [NR]	N
1377	chr5	103861596	103861597	rs11955377	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs11955377-?	NR	2E-8				NR [NR]	N
1377	chr5	103863876	103863877	rs969397	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs969397-?	NR	3E-8				NR [NR]	N
1377	chr5	103867338	103867339	rs1363098	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs1363098-?	NR	1E-8				NR [NR]	N
1377	chr5	103867338	103867339	rs1363098	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	5q21.2		rs1363098-A	0.4835	2E-8		0.09022541	[0.058-0.122] mmHg decrease	Affymetrix, Illumina [242866] (imputed)	N
1377	chr5	103870100	103870101	rs1582419	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs1582419-?	NR	1E-8				NR [NR]	N
1377	chr5	103872027	103872028	rs113358410	31430377	Chung J	2019-08-20	Brain	Genome-wide association study of cerebral small vessel disease reveals established and novel loci.	Non-lobar intracerebral hemorrhage (MTAG)	at least 1,005 European ancestry cases, at least 1,711 European ancestry controls	NA	5q21.2	Intergenic	rs113358410-?	NR	5E-6		1.2	[1.11-1.29]	Affymetrix, Illumina [39235000] (imputed)	N
1377	chr5	103874261	103874262	rs4515268	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs4515268-?	NR	4E-8				NR [NR]	N
1377	chr5	103875901	103875902	rs1363097	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs1363097-?	NR	4E-8				NR [NR]	N
1377	chr5	103876192	103876193	rs1363096	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs1363096-?	NR	3E-8				NR [NR]	N
1377	chr5	103878651	103878652	rs4482879	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs4482879-?	NR	3E-8				NR [NR]	N
1377	chr5	103879812	103879813	rs4703040	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs4703040-?	NR	3E-8				NR [NR]	N
1377	chr5	103883433	103883434	rs113474273	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	5q21.2	NR	rs113474273-?	NR	9E-6		4.441	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1377	chr5	103886212	103886213	rs6869862	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs6869862-?	NR	2E-8				NR [NR]	N
1377	chr5	103886212	103886213	rs6869862	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Schizophrenia (MTAG)	at least 33,640 European ancestry cases, at least 43,456 European ancestry controls	NA	5q21.2	NR	rs6869862-T	0.5427	3E-8		0.060221456	[0.039-0.081] unit decrease	NR [NR]	N
1377	chr5	103886212	103886213	rs6869862	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	5q21.2	NR	rs6869862-G	0.48220959412122	4E-12		0.00857653	[0.0061-0.011] unit increase	NR [NR]	N
1377	chr5	103889997	103889998	rs1592757	30804566	Lane JM	2019-02-25	Nat Genet	Biological and clinical insights from genetics of insomnia symptoms.	Insomnia symptoms (never/rarely vs. usually)	129,270 European ancestry cases, 108,357 European ancestry controls	17,140 European ancestry cases, 61,850 European ancestry controls	5q21.2	NUDT12/RAB9P1	rs1592757-C	0.35694499999999996	2E-10		1.02	[1.01-1.03]	Affymetrix [14661600] (imputed)	N
1377	chr5	103889997	103889998	rs1592757	30478444	Demontis D	2018-11-26	Nat Genet	Discovery of the first genome-wide significant risk loci for attention deficit/hyperactivity disorder.	Attention deficit hyperactivity disorder	19,099 European ancestry cases, 72 non-European ancestry cases, 1,012 Han Chinese ancestry cases, 34,194 European ancestry controls, 72 non-European ancestry controls, 925 Han Chinese ancestry controls	5,085 Icelandic ancestry cases, 5,857 cases, 131,122 Icelandic ancestry controls, 70,393 controls	5q21.2	NR	rs1592757-C	NR	1E-9		1.062	NR	Affymetrix, Illumina, Perlegen [8047421] (imputed)	N
1377	chr5	103890095	103890096	rs6867409	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs6867409-?	NR	6E-9				NR [NR]	N
1377	chr5	103895015	103895016	rs7706353	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs7706353-?	NR	6E-9				NR [NR]	N
1377	chr5	103895101	103895102	rs4438849	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs4438849-?	NR	7E-9				NR [NR]	N
1377	chr5	103895114	103895115	rs4320234	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs4320234-?	NR	8E-9				NR [NR]	N
1377	chr5	103896129	103896130	rs1833514	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs1833514-?	NR	6E-9				NR [NR]	N
1377	chr5	103897757	103897758	rs4521446	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs4521446-?	NR	7E-9				NR [NR]	N
1377	chr5	103899177	103899178	rs6596578	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs6596578-?	NR	6E-9				NR [NR]	N
1377	chr5	103899271	103899272	rs7713825	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	5q21.2	NR	rs7713825-G	0.172	2E-18		0.0125609	[0.0098-0.0154] unit decrease	NR [9732723] (imputed)	N
1377	chr5	103899271	103899272	rs7713825	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	5q21.2	NR	rs7713825-G	0.171	1E-12		0.013731	[0.0099-0.0175] unit increase	NR [9732723] (imputed)	N
1377	chr5	103899595	103899596	rs6874138	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs6874138-?	NR	6E-9				NR [NR]	N
1377	chr5	103899689	103899690	rs10064425	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs10064425-?	NR	7E-9				NR [NR]	N
1377	chr5	103901423	103901424	rs10059133	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs10059133-?	NR	5E-9				NR [NR]	N
1377	chr5	103902179	103902180	rs6865511	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs6865511-?	NR	8E-9				NR [NR]	N
1377	chr5	103902957	103902958	rs1421668	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs1421668-?	NR	6E-9				NR [NR]	N
1377	chr5	103903765	103903766	rs12659431	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs12659431-?	NR	5E-9				NR [NR]	N
1377	chr5	103903836	103903837	rs12657531	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs12657531-?	NR	1E-8				NR [NR]	N
1377	chr5	103904033	103904034	rs12658007	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs12658007-?	NR	4E-9				NR [NR]	N
1377	chr5	103904036	103904037	rs12658451	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs12658451-?	NR	6E-9				NR [NR]	N
1377	chr5	103904036	103904037	rs12658451	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	5q21.2	Intergenic	rs12658451-?		2E-16				NR [6786993] (imputed)	N
1377	chr5	103904107	103904108	rs12658019	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs12658019-?	NR	4E-9				NR [NR]	N
1377	chr5	103904107	103904108	rs12658019	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Major depressive disorder (MTAG)	119,754 European ancestry individuals	NA	5q21.2		rs12658019-?	NR	5E-12				NR [2625067]	N
1377	chr5	103904225	103904226	rs12658032	34859065	Zhang F	2021-11-11	Front Cardiovasc Med	Shared Genetic Liability and Causal Associations Between Major Depressive Disorder and Cardiovascular Diseases.	Major depressive disorder or stroke (pleiotropy)	135,458 European ancestry MDD cases, 40,585 European ancestry stroke cases, 751,012 European ancestry controls	NA	5q21.2		rs12658032-?	NR	1E-11				NR [8243736]	N
1377	chr5	103904225	103904226	rs12658032	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs12658032-?	NR	4E-10				NR [NR]	N
1377	chr5	103904225	103904226	rs12658032	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder	16,823 European ancestry cases, 25,632 European ancestry controls	NA	5q21.2		rs12658032-?	NR	1E-10		1.05496	[1.04-1.07]	NR [NR]	N
1377	chr5	103904225	103904226	rs12658032	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Attention deficit hyperactivity disorder (MTAG)	at least 19,099 European ancestry cases, at least 34,194 European ancestry controls	2,726 European ancestry cases, 16,299 European ancestry controls	5q21.2	NR	rs12658032-A	0.3559	1E-13		0.094267026	[0.069-0.119] unit increase	NR [NR]	N
1377	chr5	103904225	103904226	rs12658032	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Attention deficit hyperactivity disorder (MTAG)	61,421 individuals	NA	5q21.2	NR	rs12658032-?		1E-10				NR [520857]	N
1377	chr5	103904225	103904226	rs12658032	32332799	Song W	2020-04-24	Sci Rep	Genome-wide association analysis of insomnia using data from Partners Biobank.	Insomnia	404,588 European ancestry individuals, 17,651 European, Hispanic and African ancestry individuals	NA	5q21.2	RP11-6N13.1	rs12658032-G	0.3559	5E-9				Illumina [5508534] (imputed)	N
1377	chr5	103904225	103904226	rs12658032	31926635	Coleman JRI	2019-11-01	Biol Psychiatry	The Genetics of the Mood Disorder Spectrum: Genome-wide Association Analyses of More Than 185,000 Cases and 439,000 Controls.	Bipolar disorder or major depressive disorder	164,933 European ancestry major depressive disorder cases, 20,352 European ancestry bipolar disorder cases, 439,741 European ancestry controls	NA	5q21.2	NR	rs12658032-A	NR	2E-16		1.04	[1.03-1.05]	NR [NR] (imputed)	N
1377	chr5	103904225	103904226	rs12658032	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms	354,862 European ancestry individuals	NA	5q21.2	NR	rs12658032-A	0.3607	6E-9		0.0144	[0.0095-0.0193] unit increase	Illumina [NR] (imputed)	N
1377	chr5	103904398	103904399	rs12659965	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs12659965-?	NR	2E-8				NR [NR]	N
1377	chr5	103904913	103904914	rs11242522	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs11242522-?	NR	9E-9				NR [NR]	N
1377	chr5	103904998	103904999	rs77132457	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Yeast infection	52,218 European ancestry cases, 10,235 European ancestry controls	NA	5q21.2	NR	rs77132457-?	NR	1E-6		0.0957	[0.057-0.135] unit increase	Illumina [at least 560000] (imputed)	N
1377	chr5	103905274	103905275	rs12515429	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs12515429-?	NR	8E-9				NR [NR]	N
1377	chr5	103905409	103905410	rs17156671	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs17156671-?	NR	9E-9				NR [NR]	N
1377	chr5	103906072	103906073	rs2403284	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs2403284-?	NR	1E-8				NR [NR]	N
1377	chr5	103907336	103907337	rs7703746	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs7703746-?	NR	5E-9				NR [NR]	N
1377	chr5	103907605	103907606	rs1421667	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs1421667-?	NR	1E-8				NR [NR]	N
1377	chr5	103908245	103908246	rs2032790	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs2032790-?	NR	1E-8				NR [NR]	N
1377	chr5	103908409	103908410	rs1421666	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs1421666-?	NR	1E-8				NR [NR]	N
1377	chr5	103908867	103908868	rs4295362	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs4295362-?	NR	1E-8				NR [NR]	N
1377	chr5	103909547	103909548	rs959857	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs959857-?	NR	1E-8				NR [NR]	N
1377	chr5	103909663	103909664	rs768905	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs768905-?	NR	9E-9				NR [NR]	N
1377	chr5	103911783	103911784	rs62362442	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs62362442-?	NR	3E-9				NR [NR]	N
1377	chr5	103912113	103912114	rs62362443	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs62362443-?	NR	1E-8				NR [NR]	N
1377	chr5	103912207	103912208	rs10071115	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs10071115-?	NR	5E-9				NR [NR]	N
1377	chr5	103912318	103912319	rs10078807	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs10078807-?	NR	4E-9				NR [NR]	N
1377	chr5	103912318	103912319	rs10078807	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms (MTAG)	955,012 individuals	NA	5q21.2	NR	rs10078807-?		8E-10				NR [520857]	N
1377	chr5	103913201	103913202	rs11738191	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs11738191-?	NR	6E-9				NR [NR]	N
1377	chr5	103913263	103913264	rs11738197	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs11738197-?	NR	8E-9				NR [NR]	N
1377	chr5	103914013	103914014	rs1421665	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs1421665-?	NR	5E-9				NR [NR]	N
1377	chr5	103914522	103914523	rs13164188	32959083	Adewuyi EO	2020-09-21	Hum Genet	Genetic analysis of endometriosis and depression identifies shared loci and implicates causal links with gastric mucosa abnormality.	Endometriosis or depression (pleiotropy)	17,054 endometriosis cases, 170,756 European ancestry depression cases, 191,858 controls, 329,443 European ancestry controls	NA	5q21.2	NR	rs13164188-T		9E-9		0.0242283	[0.016-0.032] unit increase	NR [6694342]	N
1377	chr5	103914542	103914543	rs13177365	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs13177365-?	NR	6E-9				NR [NR]	N
1377	chr5	103914542	103914543	rs13177365	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms (MTAG)	354,862 European ancestry individuals	NA	5q21.2	NR	rs13177365-G	0.4971	7E-12		0.0146	[0.01-0.019] unit increase	Illumina [NR] (imputed)	N
1377	chr5	103914757	103914758	rs10053368	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs10053368-?	NR	3E-9				NR [NR]	N
1377	chr5	103914835	103914836	rs10054977	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs10054977-?	NR	8E-9				NR [NR]	N
1377	chr5	103915281	103915282	rs12658276	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs12658276-?	NR	5E-9				NR [NR]	N
1377	chr5	103915442	103915443	rs10479296	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs10479296-?	NR	3E-9				NR [NR]	N
1377	chr5	103915727	103915728	rs10479297	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs10479297-?	NR	4E-9				NR [NR]	N
1377	chr5	103916348	103916349	rs7710489	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs7710489-?	NR	7E-9				NR [NR]	N
1377	chr5	103916830	103916831	rs62362459	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs62362459-?	NR	7E-9				NR [NR]	N
1377	chr5	103917299	103917300	rs35792668	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs35792668-?	NR	1E-8				NR [NR]	N
1377	chr5	103917303	103917304	rs35207728	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs35207728-?	NR	1E-8				NR [NR]	N
1377	chr5	103917351	103917352	rs10477834	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs10477834-?	NR	8E-9				NR [NR]	N
1377	chr5	103917538	103917539	rs10477835	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	5q21.2		rs10477835-A	0.3844	6E-13	(conditional-joint)	0.0104	[0.0077-0.0131] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1377	chr5	103917789	103917790	rs1363105	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs1363105-?	NR	1E-9				NR [NR]	N
1377	chr5	103917836	103917837	rs1363103	34431594	Atkins JL	2021-08-25	Aging Cell	A genome-wide association study of the frailty index highlights brain pathways in ageing.	Frailty index	175,226 European ancestry individuals	NA	5q21.2	NR	rs1363103-T	0.62	2E-8		0.0191	[0.012-0.026] unit increase	Affymetrix, Illumina [7666890] (imputed)	N
1377	chr5	103917836	103917837	rs1363103	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Neuropsychiatric disorders	19,099 European ancestry attention deficit hyperactivity disorder cases, 18,381 European ancestry autism spectrum disorder cases, 20,352 European ancestry bipolar disorder cases, 170,756 European ancestry major depressive disorder cases, 33,640 European ancestry schizophrenia cases, 466,420 European ancestry controls	NA	5q21.2	NR	rs1363103-T	NR	4E-8		5.494	NR z score increase	NR [NR]	N
1377	chr5	103917836	103917837	rs1363103	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Subjective well-being	388,538 European ancestry individuals	NA	5q21.2	NR	rs1363103-C	0.3803	2E-9		0.014	[0.0095-0.0185] unit increase	Illumina [NR] (imputed)	N
1377	chr5	103917866	103917867	rs1363102	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs1363102-?	NR	5E-9				NR [NR]	N
1377	chr5	103918227	103918228	rs10072579	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs10072579-?	NR	5E-9				NR [NR]	N
1377	chr5	103918621	103918622	rs10072849	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs10072849-?	NR	5E-9				NR [NR]	N
1377	chr5	103918698	103918699	rs10057459	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs10057459-?	NR	4E-9				NR [NR]	N
1377	chr5	103918748	103918749	rs10057469	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs10057469-?	NR	5E-9				NR [NR]	N
1377	chr5	103918920	103918921	rs67597604	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	5q21.2	Intergenic	rs67597604-T	0.1594	5E-8	(MTAG)	0.0172	[0.011-0.023] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1377	chr5	103919821	103919822	rs10052804	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs10052804-?	NR	9E-9				NR [NR]	N
1377	chr5	103919839	103919840	rs10059643	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs10059643-?	NR	7E-9				NR [NR]	N
1377	chr5	103920769	103920770	rs254011	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs254011-?	NR	3E-8				NR [NR]	N
1377	chr5	103924373	103924374	rs17348216	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	5q21.2	NUDT12	rs17348216-T	0.1727	4E-9		0.015646625	[0.01-0.021] unit decrease	Affymetrix [11514654] (imputed)	N
1377	chr5	103926043	103926044	rs254013	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Anorexia nervosa vs autism spectrum disorder (ordinary least squares (OLS))	16,992 anorexia nervosa cases, 18,381 autism spectrum disorder cases	NA	5q21.2		rs254013-?	NR	3E-9		0.0183	NR unit decrease	NR [5647804] (imputed)	N
1377	chr5	103927578	103927579	rs2447838	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs2447838-?	NR	7E-9				NR [NR]	N
1377	chr5	103928316	103928317	rs72780741	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	5q21.2		rs72780741-C	0.829	3E-22		0.015	[0.011-0.019] unit increase	NR [NR] (imputed)	N
1377	chr5	103929587	103929588	rs72780746	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	5q21.2	NUDT12	rs72780746-T	0.8315	4E-10		0.019811329	[0.014-0.026] unit increase	Affymetrix [11515109] (imputed)	N
1377	chr5	103929587	103929588	rs72780746	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	5q21.2	NR	rs72780746-C	0.173	2E-14		0.025762958	[0.019-0.032] unit decrease	NR [~ 10000000] (imputed)	N
1377	chr5	103931706	103931707	rs2431112	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs2431112-?	NR	1E-8				NR [NR]	N
1377	chr5	103931706	103931707	rs2431112	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	5q21.2	NUDT12	rs2431112-A	0.4407	2E-15		0.002	[0.0014-0.0026] unit decrease	Affymetrix [15275733] (imputed)	N
1377	chr5	103931706	103931707	rs2431112	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	223,215 British ancestry individuals	111,610 British ancestry individuals	5q21.2	RP11-6N13.1	rs2431112-A	0.44	2E-13		0.002	[0.0014-0.0026] unit decrease	Affymetrix [15275733] (imputed)	N
1377	chr5	103933472	103933473	rs2447832	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs2447832-?	NR	2E-8				NR [NR]	N
1377	chr5	103933472	103933473	rs2447832	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	5q21.2	NA	rs2447832-T	0.4433	2E-10		0.0109	[0.0076-0.0142] unit increase	NR [~ 27400000] (imputed)	N
1377	chr5	103938114	103938115	rs1592754	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs1592754-?	NR	2E-8				NR [NR]	N
1377	chr5	103939673	103939674	rs12187898	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs12187898-?	NR	5E-9				NR [NR]	N
1377	chr5	103939673	103939674	rs12187898	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Subjective well-being (MTAG)	388,538 European ancestry individuals	NA	5q21.2	NR	rs12187898-C	0.4809	2E-12		0.0129	[0.0094-0.0164] unit decrease	Illumina [NR] (imputed)	N
1377	chr5	103939769	103939770	rs12187903	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs12187903-?	NR	4E-9				NR [NR]	N
1377	chr5	103940049	103940050	rs1000613	28468790	Agopian AJ	2017-06-01	Circ Cardiovasc Genet	Genome-Wide Association Studies and Meta-Analyses for Congenital Heart Defects.	Congenital heart disease (inherited effect)	1,119 European ancestry trios, 406 European ancestry cases, 2,976 European ancestry controls, 415 non-European ancestry trios	NA	5q21.2	intergenic	rs1000613-?	NR	9E-6		1.359983	[1.187076-1.558076]	Illumina [at least 4756772] (imputed)	N
1378	chr5	103940414	103940415	rs254027	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Triglycerides	429,011 European ancestry individuals	NA	5q21.2		rs254027-A	0.44	2E-8		0.011	mmol/L increase	NR [NR] (imputed)	N
1378	chr5	103940414	103940415	rs254027	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	5q21.2		rs254027-A	0.44	4E-9				NR [NR] (imputed)	N
1378	chr5	103940414	103940415	rs254027	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	High density lipoprotein cholesterol levels	392,965 European ancestry individuals	NA	5q21.2		rs254027-A	0.44	5E-11		0.011	mmol/L decrease	NR [NR] (imputed)	N
1378	chr5	103940414	103940415	rs254027	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	5q21.2		rs254027-A	0.44	9E-12		0.01	% increase	NR [NR] (imputed)	N
1378	chr5	103941069	103941070	rs1363101	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs1363101-?	NR	4E-9				NR [NR]	N
1378	chr5	103941400	103941401	rs10455065	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs10455065-?	NR	7E-9				NR [NR]	N
1378	chr5	103941414	103941415	rs10455066	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs10455066-?	NR	6E-9				NR [NR]	N
1378	chr5	103941792	103941793	rs2018142	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs2018142-?	NR	3E-9				NR [NR]	N
1378	chr5	103944019	103944020	rs254024	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs254024-?	NR	2E-8				NR [NR]	N
1378	chr5	103944019	103944020	rs254024	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	5q21.2	NUDT12	rs254024-G	0.561524	5E-8		0.0104752	[0.0067-0.0142] unit increase	Affymetrix [NR] (imputed)	N
1378	chr5	103944019	103944020	rs254024	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	5q21.2	NR	rs254024-T	0.4375	4E-10		0.015586956	[0.011-0.02] unit increase	Affymetrix [10549349] (imputed)	N
1378	chr5	103944019	103944020	rs254024	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	5q21.2	NUDT12	rs254024-T	0.4364	1E-11		0.01754736	[0.012-0.023] unit increase	Affymetrix [~ 11515000] (imputed)	N
1378	chr5	103945125	103945126	rs2431109	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs2431109-?	NR	2E-8				NR [NR]	N
1378	chr5	103945177	103945178	rs2161097	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs2161097-?	NR	2E-8				NR [NR]	N
1378	chr5	103945177	103945178	rs2161097	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	5q21.2	NA	rs2161097-T	0.4408	2E-12		0.0126	[0.0091-0.0161] unit increase	NR [~ 27400000] (imputed)	N
1378	chr5	103946481	103946482	rs2112163	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs2112163-?	NR	2E-8				NR [NR]	N
1378	chr5	103947204	103947205	rs2447828	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs2447828-?	NR	2E-8				NR [NR]	N
1378	chr5	103947204	103947205	rs2447828	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	5q21.2	NR	rs2447828-?	NR	3E-10				Affymetrix [~ 8270000] (imputed)	N
1378	chr5	103947204	103947205	rs2447828	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	5q21.2		rs2447828-?	NR	5E-10				NR [~ 8900000] (imputed)	N
1378	chr5	103947967	103947968	rs2431108	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs2431108-?	NR	6E-9				NR [NR]	N
1378	chr5	103947967	103947968	rs2431108	33568662	Dashti HS	2021-02-10	Nat Commun	Genetic determinants of daytime napping and effects on cardiometabolic health.	Daytime nap	452,633 European ancestry individuals	541,333 European ancestry individuals	5q21.2	RP11-6N13.1	rs2431108-C		1E-57		0.0146	[0.013-0.016] unit increase	Affymetrix [13304133] (imputed)	N
1378	chr5	103947967	103947968	rs2431108	32999390	Trajanoska K	2020-09-30	Commun Biol	Genetic basis of falling risk susceptibility in the UK Biobank Study.	Falling risk	89,076 European ancestry cases, 362,103 European ancestry controls	2,215 cases, 6289 controls	5q21.2	RP11, 6N13.1	rs2431108-C	0.33	4E-8		1.03	[1.02-1.04]	Affymetrix [7745390] (imputed)	N
1378	chr5	103947967	103947968	rs2431108	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	5q21.2	NR	rs2431108-C	0.328	8E-17		1.0548522	[1.04-1.07]	Affymetrix, Illumina [NR] (imputed)	N
1378	chr5	103948044	103948045	rs2447827	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs2447827-?	NR	3E-8				NR [NR]	N
1378	chr5	103950250	103950251	rs254020	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs254020-?	NR	3E-8				NR [NR]	N
1378	chr5	103955360	103955361	rs254023	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs254023-?	NR	4E-8				NR [NR]	N
1378	chr5	103955360	103955361	rs254023	31409800	Pazoki R	2019-08-13	Nat Commun	GWAS for urinary sodium and potassium excretion highlights pathways shared with cardiovascular traits.	Urinary potassium excretion	446,230 European ancestry individuals	7,612 African ancestry individuals, 10,095 South Asian ancestry individuals	5q21.2	RAB9BP1	rs254023-T	0.560891	7E-11	(EA)	0.007873	[0.0055-0.0102] unit decrease	Affymetrix [~ 8800000] (imputed)	N
1378	chr5	103956515	103956516	rs171697	31518406	Abdellaoui A	2019-09-13	Hum Mol Genet	Phenome-wide investigation of health outcomes associated with genetic predisposition to loneliness.	Loneliness	511,280 European ancestry individuals	NA	5q21.2	RP11-6 N13.1	rs171697-?	NR	5E-9		0.02	[0.014-0.026] unit decrease	Affymetrix, Illumina [up to 14113458] (imputed)	N
1378	chr5	103956515	103956516	rs171697	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	5q21.2	NA	rs171697-G	0.3239	4E-14	(Female)	1.0615711	[1.05-1.08]	Affymetrix, Illumina [NR] (imputed)	N
1378	chr5	103956515	103956516	rs171697	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	5q21.2	NR	rs171697-G	0.335880658967291	1E-15		0.007777971	[0.0059-0.0097] unit increase	NR [NR]	N
1378	chr5	103956515	103956516	rs171697	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	5q21.2	Intergenic	rs171697-C	0.6666	1E-21	(MTAG)	0.0168	[0.013-0.02] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1378	chr5	103956515	103956516	rs171697	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	5q21.2	Intergenic	rs171697-C	0.6666	5E-14		0.0181	[0.013-0.023] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1378	chr5	103956515	103956516	rs171697	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	5q21.2		rs171697-C	0.6712	5E-19		0.0133	[0.01-0.016] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1378	chr5	103956515	103956516	rs171697	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	5q21.2	Intergenic	rs171697-C	0.6712	1E-22	(MTAG)	0.0137	[0.011-0.016] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1378	chr5	103956515	103956516	rs171697	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Neuroticism (MTAG)	168,105 European ancestry individuals	NA	5q21.2	NR	rs171697-C	0.6686	2E-9		0.018	[0.012-0.024] unit decrease	Illumina [NR] (imputed)	N
1378	chr5	103959344	103959345	rs254045	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs254045-?	NR	3E-8				NR [NR]	N
1378	chr5	103964584	103964585	rs77960	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs77960-?	NR	1E-8				NR [NR]	N
1378	chr5	103964584	103964585	rs77960	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	5q21.2	NUDT12	rs77960-G	0.671971	2E-12		0.0105292	[0.0076-0.0135] unit increase	Affymetrix [12370749]	N
1378	chr5	103964584	103964585	rs77960	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	5q21.2	intergenic	rs77960-A	0.3304	8E-11		1.022346		Affymetrix [11880941] (imputed)	N
1378	chr5	103964584	103964585	rs77960	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	5q21.2	Intergenic	rs77960-A	0.333	2E-11	(MTAG)	0.0128	[0.0091-0.0165] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1378	chr5	103965222	103965223	rs185260	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs185260-?	NR	4E-8				NR [NR]	N
1378	chr5	103972356	103972357	rs30266	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs30266-?	NR	1E-8				NR [NR]	N
1378	chr5	103972356	103972357	rs30266	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Neuropsychiatric disorders	19,099 European ancestry attention deficit hyperactivity disorder cases, 18,381 European ancestry autism spectrum disorder cases, 20,352 European ancestry bipolar disorder cases, 170,756 European ancestry major depressive disorder cases, 33,640 European ancestry schizophrenia cases, 466,420 European ancestry controls	NA	5q21.2	NR	rs30266-A	NR	1E-15		7.986	NR z score increase	NR [NR]	N
1378	chr5	103972356	103972357	rs30266	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Major depressive disorder (MTAG)	at least 170,756 European ancestry cases, at least 329,443 European ancestry controls	NA	5q21.2	NR	rs30266-A	0.3271	7E-19		0.039184805	[0.031-0.048] unit increase	NR [NR]	N
1378	chr5	103972356	103972357	rs30266	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Neuroticism	274,107 British ancestry individuals	NA	5q21.2	NR	rs30266-A	NR	4E-6		1.009	[1.005-1.013]	NR [8968716] (imputed)	N
1378	chr5	103972356	103972357	rs30266	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Help-seeking from a GP	113,262 British ancestry cases, 219,360 British ancestry controls	NA	5q21.2	NR	rs30266-A	0.328	4E-12		1.039	[1.03-1.05]	NR [5276842] (imputed)	N
1378	chr5	103972356	103972357	rs30266	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure	35,269 European ancestry cases, 63,451 European ancestry controls	NA	5q21.2	NR	rs30266-A	0.333712	5E-7		1.072	[1.04-1.1]	Affymetrix [7791636] (imputed)	N
1378	chr5	103972356	103972357	rs30266	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder	29,475 European ancestry cases, 63,482 European ancestry controls	NA	5q21.2	NR	rs30266-A	0.333712	2E-7		1.082	[1.05-1.11]	Affymetrix [7791636] (imputed)	N
1378	chr5	103972356	103972357	rs30266	30718901	Howard DM	2019-02-04	Nat Neurosci	Genome-wide meta-analysis of depression identifies 102 independent variants and highlights the importance of the prefrontal brain regions.	Depression	118,811 European ancestry cases, 327,427 European ancestry controls, 127,552 cases, 233,763 controls	414,055 European ancestry cases, 892,299 European ancestry controls	5q21.2	NR	rs30266-A	0.3296	2E-45		1.033	[1.028-1.037]	NR [8098588] (imputed)	N
1378	chr5	103972356	103972357	rs30266	29970889	Day FR	2018-07-03	Nat Commun	Elucidating the genetic basis of social interaction and isolation.	Loneliness (MTAG)	487,647 European ancestry individuals	NA	5q21.2	NR	rs30266-G	0.671476	2E-8		0.012251923	[0.008-0.0165] unit decrease	NR [NR] (imputed)	N
1378	chr5	103972356	103972357	rs30266	29970889	Day FR	2018-07-03	Nat Commun	Elucidating the genetic basis of social interaction and isolation.	Loneliness	80,134 European ancestry cases, 364,890 European ancestry controls	NA	5q21.2	RAB9BP1	rs30266-G	0.672	8E-9		0.005	[0.0032-0.0068] unit decrease	NR [NR] (imputed)	N
1378	chr5	103978325	103978326	rs33817	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs33817-?	NR	2E-8				NR [NR]	N
1378	chr5	103981725	103981726	rs40465	31409800	Pazoki R	2019-08-13	Nat Commun	GWAS for urinary sodium and potassium excretion highlights pathways shared with cardiovascular traits.	Urinary sodium excretion	446,237 European ancestry individuals	7,612 African ancestry individuals, 10,095 South Asian ancestry individuals	5q21.2	RAB9BP1	rs40465-T	0.668425	3E-10	(EA)	0.00832914	[0.0057-0.0109] unit decrease	Affymetrix [~ 8800000] (imputed)	N
1378	chr5	103981725	103981726	rs40465	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	5q21.2		rs40465-T	0.6702	2E-8		0.013	[0.0091-0.0169] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
1378	chr5	103981725	103981726	rs40465	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	5q21.2	NUDT12	rs40465-T	0.6689	7E-14		0.018838508	[0.014-0.024] unit decrease	Affymetrix [11515109] (imputed)	N
1378	chr5	103981725	103981726	rs40465	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	5q21.2	NR	rs40465-G	0.3319	4E-10		0.0078	[0.0053-0.0103] unit increase	NR [7666894] (imputed)	N
1378	chr5	103991475	103991476	rs416223	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs416223-?	NR	5E-9				NR [NR]	N
1378	chr5	103991475	103991476	rs416223	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Autism spectrum disorder (MTAG)	60,817 individuals	NA	5q21.2	NR	rs416223-?		1E-10				NR [520857]	N
1378	chr5	103995367	103995368	rs325485	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs325485-?	NR	1E-8				NR [NR]	N
1378	chr5	103995367	103995368	rs325485	33830993	Johnston KJA	2021-04-08	PLoS Genet	Sex-stratified genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	387,649 British ancestry individuals	NA	5q21.2	RP11-6N13.1	rs325485-?	NR	3E-8			[NR]	NR [NR] (imputed)	N
1378	chr5	103995367	103995368	rs325485	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Autism spectrum disorder (MTAG)	at least 18,381 European ancestry cases, at least 27,969 European ancestry controls	NA	5q21.2	NR	rs325485-A	0.3738	4E-13		0.09012499	[0.066-0.115] unit increase	NR [NR]	N
1378	chr5	103995367	103995368	rs325485	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	5q21.2	NUDT12	rs325485-A	0.397111	9E-9		0.0117345	[0.0077-0.0157] unit increase	Affymetrix [NR] (imputed)	N
1378	chr5	103995367	103995368	rs325485	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma and attention deficit hyperactivity disorder	46,802 European ancestry asthma cases, 19,099 European ancestry attention deficit hyperactivity disorder cases, 381,675 European ancestry controls	NA	5q21.2	Intergenic	rs325485-?	NR	2E-8				Affymetrix [up to 8274727] (imputed)	N
1378	chr5	103995367	103995368	rs325485	30804558	Grove J	2019-02-25	Nat Genet	Identification of common genetic risk variants for autism spectrum disorder.	Autism spectrum disorder	18,381 European ancestry cases, 27,969 European ancestry controls	2,119 European ancestry cases, 142,379 European ancestry controls	5q21.2	Intergenic	rs325485-A	0.378	2E-6		1.066	[NR]	Illumina [9112387] (imputed)	N
1378	chr5	103998895	103998895	rs34073570	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	5q21.2	intergenic	rs34073570-C	0.601298	2E-9		0.0125969	[0.0084-0.0167] unit decrease	NR [16516521] (imputed)	N
1378	chr5	104000751	104000752	rs325481	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs325481-?	NR	8E-9				NR [NR]	N
1378	chr5	104000751	104000752	rs325481	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	5q21.2		rs325481-A	NR	3E-10		0.0106	[0.0073-0.0139] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1378	chr5	104000751	104000752	rs325481	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	5q21.2		rs325481-A	NR	2E-10		0.0134	[0.0093-0.0175] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
1378	chr5	104000751	104000752	rs325481	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	5q21.2		rs325481-A	NR	2E-8		0.0109	[0.0072-0.0146] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1378	chr5	104002345	104002346	rs200312312	28494655	Duncan L	2017-05-12	Am J Psychiatry	Significant Locus and Metabolic Genetic Correlations Revealed in Genome-Wide Association Study of Anorexia Nervosa.	Anorexia nervosa	3,495 European ancestry cases, 10,982 European ancestry controls	NA	5q21.2	NR	rs200312312-T	0.677	7E-8		1.2	[1.14-1.26]	Illumina [10641224] (imputed)	N
1378	chr5	104003310	104003311	rs191800971	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Depression	at least 5,919 European ancestry cases, at least 130,691 European ancestry controls	634,037 European ancestry cases, 1,308,690 European ancestry controls	5q21.2	RP11, 6N13.1	rs191800971-G	0.3191	1E-45		0.03394281	[0.029-0.039] unit decrease	NR [9417325] (imputed)	N
1378	chr5	104006666	104006667	rs325500	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs325500-?	NR	7E-9				NR [NR]	N
1378	chr5	104006666	104006667	rs325500	32332799	Song W	2020-04-24	Sci Rep	Genome-wide association analysis of insomnia using data from Partners Biobank.	Insomnia	404,588 European ancestry individuals, 17,651 European, Hispanic and African ancestry individuals	NA	5q21.2	RP11-6N13.1	rs325500-G	0.3966	3E-8				Illumina [5508534] (imputed)	N
1378	chr5	104007432	104007433	rs325501	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	5q21.2	NR	rs325501-C	0.578692005870663	2E-9		0.0076786946	[0.0052-0.0102] unit decrease	NR [NR]	N
1378	chr5	104007432	104007433	rs325501	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	5q21.2	NR	rs325501-C	0.578692005870663	9E-9		0.008452519	[0.0056-0.0113] unit decrease	NR [NR]	N
1378	chr5	104008132	104008133	rs325502	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs325502-?	NR	2E-9				NR [NR]	N
1378	chr5	104008132	104008133	rs325502	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder in trauma exposed individuals	13,393 European ancestry cases, 10,701 European ancestry controls		5q21.2	NR	rs325502-G	0.422234	8E-6		1.1223345	[1.07-1.18]	Affymetrix [7791636] (imputed)	N
1378	chr5	104012302	104012303	rs325506	30804558	Grove J	2019-02-25	Nat Genet	Identification of common genetic risk variants for autism spectrum disorder.	Autism and major depressive disorder (MTAG)	18,381 European ancestry autism cases, 27,969 European ancestry controls, 111,902 major depression cases, 312,113 controls	NA	5q21.2		rs325506-C	0.423	3E-11		0.057	[0.039-0.075] unit increase	Illumina [NR] (imputed)	N
1378	chr5	104013781	104013782	rs21126	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs21126-?	NR	2E-9				NR [NR]	N
1378	chr5	104013781	104013782	rs21126	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder	16,823 European ancestry cases, 25,632 European ancestry controls	NA	5q21.2		rs21126-?	NR	4E-10		0.95094	[0.94-0.97]	NR [NR]	N
1378	chr5	104022238	104022239	rs396755	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma and major depressive disorder	46,802 European ancestry asthma cases, 59,851 European ancestry major depressive disorder cases, 460,635 European ancestry controls	NA	5q21.2	Intergenic	rs396755-?	NR	2E-11				Affymetrix [up to 13554551] (imputed)	N
1378	chr5	104032413	104032414	rs75419803	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Coronary artery disease in dyslipidemia	768 Korean ancestry cases, 19,999 Korean ancestry controls	NA	5q21.2		rs75419803-C	0.09688	6E-6		1.445	[1.232-1.696]	Affymetrix [7975321] (imputed)	N
1378	chr5	104034139	104034140	rs410915	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs410915-?	NR	4E-9				NR [NR]	N
1378	chr5	104037759	104037760	rs12055234	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Bipolar disorder (MTAG)	at least 20,352 European ancestry cases, at least 31,358 European ancestry controls	NA	5q21.2	NR	rs12055234-A	0.3231	4E-9		0.06832512	[0.046-0.091] unit increase	NR [NR]	N
1378	chr5	104037759	104037760	rs12055234	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	5q21.2		rs12055234-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1378	chr5	104042642	104042643	rs1976423	33830993	Johnston KJA	2021-04-08	PLoS Genet	Sex-stratified genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	387,649 British ancestry individuals	NA	5q21.2	RP11-6N13.1	rs1976423-?	NR	1E-8			[NR]	NR [NR] (imputed)	N
1378	chr5	104042642	104042643	rs1976423	31194737	Johnston KJA	2019-06-13	PLoS Genet	Genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	387,649 British ancestry individuals	NA	5q21.2	RP11-6N13.1	rs1976423-A	0.4968	8E-9		0.014	[0.0093-0.0187] unit decrease	NR [NR]	N
1378	chr5	104043155	104043156	rs325521	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs325521-?	NR	2E-8				NR [NR]	N
1378	chr5	104045385	104045386	rs325523	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	5q21.2		rs325523-?	NR	2E-8				NR [NR]	N
1378	chr5	104069916	104069917	rs161645	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	5q21.2	NR	rs161645-A	0.316103	4E-8		0.041283373	[0.027-0.056] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1378	chr5	104069916	104069917	rs161645	23290196	Hek K	2013-01-02	Biol Psychiatry	A genome-wide association study of depressive symptoms.	Depression (quantitative trait)	up to 34,549 European ancestry individuals	up to 16,709 European ancestry individuals	5q21.2	NUDT12	rs161645-A	0.34	8E-8				Affymetrix, Illumina [2391896] (imputed)	N
1379	chr5	104072417	104072418	rs35841922	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Neuropsychiatric disorders	19,099 European ancestry attention deficit hyperactivity disorder cases, 18,381 European ancestry autism spectrum disorder cases, 20,352 European ancestry bipolar disorder cases, 170,756 European ancestry major depressive disorder cases, 33,640 European ancestry schizophrenia cases, 466,420 European ancestry controls	NA	5q21.2	NR	rs35841922-T	NR	4E-8		5.475	NR z score decrease	NR [NR]	N
1379	chr5	104075129	104075130	rs6421926	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	5q21.2	NR	rs6421926-C	0.667427427661653	2E-10		0.011019456	[0.0076-0.0144] unit decrease	NR [NR]	N
1379	chr5	104077817	104077818	rs759425971	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	5q21.2	NR	rs759425971-?	NR	8E-6		0.0072504	[0.0041-0.0104] unit increase	Affymetrix [805426] (imputed)	N
1379	chr5	104082178	104082179	rs323509	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Major depressive disorder vs anorexia nervosa (ordinary least squares (OLS))	170,756 MDD cases, 16,992 anorexia nervosa cases	NA	5q21.2		rs323509-?	NR	2E-9		0.015	NR unit decrease	NR [5460735] (imputed)	N
1379	chr5	104082178	104082179	rs323509	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Bipolar disorder vs anorexia nervosa (ordinary least squares (OLS))	20,352 bipolar disorder cases, 16,992 anorexia nervosa cases	NA	5q21.2		rs323509-?	NR	2E-9		0.022	NR unit decrease	NR [5569514] (imputed)	N
1379	chr5	104082178	104082179	rs323509	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	5q21.2	NR	rs323509-C	0.6771	3E-9		0.0074	[0.0049-0.0099] unit decrease	NR [7666894] (imputed)	N
1379	chr5	104154194	104154195	rs5870128	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Diastolic blood pressure (baseline)	13,137 European ancestry individuals	2,451 European ancestry individuals	5q21.2	NR	rs5870128-A	0.8939	5E-7		0.9438	[0.58-1.31] mmHg increase	Affymetrix, Illumina [NR] (imputed)	N
1379	chr5	104199059	104199060	rs1632744	23648065	Low SK	2013-05-04	Cancer Sci	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (all topoisomerase inhibitors)	106 Japanese ancestry cases, 187 Japanese ancestry controls	NA	5q21.2	RAB9P1	rs1632744-T	0.258	5E-6	(Recessive model)	1.387	[0.959-2.007]	Illumina [733202]	N
1380	chr5	104208012	104208013	rs10074959	23648065	Low SK	2013-05-04	Cancer Sci	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (all topoisomerase inhibitors)	106 Japanese ancestry cases, 187 Japanese ancestry controls	NA	5q21.2	RAB9P1	rs10074959-T	0.237	1E-6	(Recessive model)	1.524	[1.048-2.217]	Illumina [733202]	N
1380	chr5	104226453	104226454	rs17496593	31263163	Liu CT	2019-07-01	Sci Rep	Genome-wide Association Study of Change in Fasting Glucose over time in 13,807 non-diabetic European Ancestry Individuals.	Fasting glucose change	13,807 European ancestry individuals	NA	5q21.2	NUDT12	rs17496593-A	0.91	2E-6		0.111	[0.072-0.15] unit decrease	Affymetrix, Illumina [~ 25000000] (imputed)	N
1380	chr5	104227704	104227705	rs1153996	28109725	Fuchs O	2017-01-18	J Allergy Clin Immunol	6q12 and 11p14 variants are associated with postnatal exhaled nitric oxide levels and respiratory symptoms.	Exhaled nitric oxide output	229 European ancestry infants		5q21.2	NR	rs1153996-A	NR	8E-6	(adjusted)	0.09	nL/s decrease	Illumina [567864]	N
1380	chr5	104261747	104261748	rs140569509	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Treatment or medication use - glyceryl trinitrate (UKB data field 20003_1140860834)	1,397 European ancestry cases, 454,879 European ancestry controls	NA	5q21.2		rs140569509-T	0.003193	3E-9		2.49	[1.67-3.31] unit increase	NR [11842647] (imputed)	N
1381	chr5	104347648	104347649	rs13178964	24165912	He J	2013-10-28	Circ Cardiovasc Genet	Genome-wide association study identifies 8 novel loci associated with blood pressure responses to interventions in Han Chinese.	Blood pressure measurement (low sodium intervention)	1,850 Han Chinese ancestry individuals	660 Han Chinese ancestry individuals	5q21.2	RAB9BP1	rs13178964-G	0.05	5E-7	(SBP, during intervention)	3.42	[2.09-4.75] mmHg decrease	Affymetrix [2216774] (imputed)	N
1381	chr5	104435375	104435376	rs4571441	32890573	Yan Q	2020-09-02	J Allergy Clin Immunol	A genome-wide association study of asthma hospitalizations in adults.	Exacerbations requiring hospitalisation in asthma	1,658 British ancestry cases, 32,509 British ancestry controls	NA	5q21.2	NR	rs4571441-T	0.01	8E-7		1.96	[NR]	Affymetrix [87696888] (imputed)	N
1382	chr5	104467114	104467115	rs7733624	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	5q21.3	RAB9P1, LOC345571	rs7733624-A	0.001	1E-6		34.08	[3.52-329.69]	Illumina [1556551]	N
1382	chr5	104529306	104529307	rs35399673	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Skin reflectance (Melanin index)	720 South Asian ancestry individuals		5q21.3	NR	rs35399673-C	NR	1E-6	(conditioned on rs1426654)	0.753475	[0.45-1.06] unit decrease	Affymetrix, Illumina [at least 398118] (imputed)	N
1382	chr5	104560435	104560436	rs2431968	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		AC099520.1	rs2431968-?	NR	3E-9	(male)	3.08425	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1382	chr5	104565940	104565941	rs72786039	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q21.3	NR	rs72786039-T	0.0122	6E-9	(TYMP)	0.5728	NR unit increase	Illumina [1671387] (imputed)	N
1382	chr5	104568837	104568838	rs115269478	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		AC099520.1	rs115269478-?	NR	2E-9		2.22163	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1383	chr5	104678078	104678079	rs10061420	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	5q21.3		rs10061420-A	0.4741	7E-9		0.0082	[0.0055-0.0109] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1383	chr5	104678078	104678079	rs10061420	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	5q21.3	Intergenic	rs10061420-A	0.4741	9E-10	(MTAG)	0.0081	[0.0056-0.0106] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1383	chr5	104697805	104697806	rs1501665	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	5q21.3	Intergenic	rs1501665-C	0.4006	5E-8	(MTAG)	0.0092	[0.0059-0.0125] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1383	chr5	104704508	104704509	rs148907117	33106475	Li QS	2020-10-26	Transl Psychiatry	Genome-wide association studies of antidepressant class response and treatment-resistant depression.	Response to norepinephrine-dopamine reuptake inhibitors (responders vs non-responders)	3,971 European ancestry responders, 3,512 European ancestry non-responders	NA	5q21.3	NR	rs148907117-T	NR	7E-7		3.5989	NR	Illumina [at least 560000] (imputed)	N
1383	chr5	104722915	104722916	rs76482840	27694959	Bonder MJ	2016-10-03	Nat Genet	The effect of host genetics on the gut microbiome.	Gut microbiota (functional units)	984 European ancestry individuals	530 European ancestry individuals	5q21.3	NUDT12	rs76482840-A	NR	3E-8	(PWY-3781_aerobic_respiration_I_(cytochrome_c))	5.567065	NR Z-score decrease	Illumina [8100000] (imputed)	N
1384	chr5	104726661	104726662	rs10057670	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	5q21.3		rs10057670-T	0.4659	5E-8	(conditional-joint)	0.0077	[0.005-0.0104] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1385	chr5	104867935	104867936	rs7447447	21490707	Cornelis MC	2011-04-07	PLoS Genet	Genome-wide meta-analysis identifies regions on 7p21 (AHR) and 15q24 (CYP1A2) as determinants of habitual caffeine consumption.	Caffeine consumption	47,431 European ancestry individuals	NA	5q21.3	NR	rs7447447-T	0.13	7E-6		0.1521	[0.08-0.22] mg/day increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1385	chr5	104879133	104879134	rs77780208	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	5q21.3	Intergenic	rs77780208-A	NR	9E-7	(between families)	4.917	unit increase	Affymetrix [up to 15107142] (imputed)	N
1385	chr5	104887039	104887040	rs10037149	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	5q21.3	NR	rs10037149-G	0.369	1E-8		0.0063613	[0.0042-0.0086] unit decrease	NR [9732723] (imputed)	N
1385	chr5	104954327	104954328	rs10479334	21368711	Alliey-Rodriguez N	2011-03-02	Psychiatr Genet	Genome-wide association study of personality traits in bipolar patients.	Personality traits in bipolar disorder	1,951 European ancestry cases	NA	5q21.3	intergenic	rs10479334-?	0.078	2E-9	(TCI-C1)			Affymetrix [702866]	N
1386	chr5	105038632	105038633	rs34256173	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Subjective well-being	298,420 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	5q21.3	NR	rs34256173-T	0.1015	8E-7		0.024076117	[0.015-0.034] unit increase	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
1386	chr5	105078677	105078678	rs7701292	29423119	Khan S	2017-11-28	Oncotarget	Meta-analysis of three genome-wide association studies identifies two loci that predict survival and treatment outcome in breast cancer.	Survival in endocrine treated breast cancer (estrogen-receptor positive)	2,629 European ancestry individuals, 122 individuals	NA	5q21.3	RAB9P1	rs7701292-?		2E-8		1.79	[1.59-1.99]	Illumina [275827] (imputed)	N
1386	chr5	105107222	105107223	rs6861335	34130359	Curtis SW	2021-06-15	Genet Epidemiol	FAT4 identified as a potential modifier of orofacial cleft laterality.	Right unilateral cleft lip and palate	59 Asian ancestry cases, 94 European ancestry cases, 263 Hispanic cases, 1,626 controls	NA	5q21.3	NR	rs6861335-?		2E-6		2.2	[1.59-3.05]	Illumina [539473] (imputed)	N
1387	chr5	105200292	105200293	rs13165419	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	5q21.3	Intergenic	rs13165419-A	0.4507	3E-9	(MTAG)	0.0107	[0.0072-0.0142] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1387	chr5	105200292	105200293	rs13165419	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	5q21.3	Intergenic	rs13165419-A	0.4507	3E-8		0.0108	[0.0069-0.0147] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1388	chr5	105297528	105297529	rs13189969	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	5q21.3	LOC345571	rs13189969-A	0.265	8E-6	(Fat mass )	0.03	[NR] kg increase	Illumina [899892]	N
1388	chr5	105347156	105347157	rs4957581	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	5q21.3	NR	rs4957581-?	NR	5E-6		4.576	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1389	chr5	105411546	105411547	rs188222191	31591132	Wu W	2019-10-07	Genetics	Retrospective Association Analysis of Longitudinal Binary Traits Identifies Important Loci and Pathways in Cocaine Use.	Longitudinal cocaine use	1,682 mostly never users, 296 moderate decrease users, 86 elevated chronic users, 167 mostly frequent users	NA	5q21.3	EFNA5	rs188222191-?	NR	5E-6	(AA)			Illumina [10215072] (imputed)	N
1389	chr5	105411546	105411547	rs188222191	31591132	Wu W	2019-10-07	Genetics	Retrospective Association Analysis of Longitudinal Binary Traits Identifies Important Loci and Pathways in Cocaine Use.	Longitudinal cocaine use	1,682 mostly never users, 296 moderate decrease users, 86 elevated chronic users, 167 mostly frequent users	NA	5q21.3	EFNA5	rs188222191-?	NR	3E-7				Illumina [10215072] (imputed)	N
1389	chr5	105419512	105419513	rs6894797	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	5q21.3	LOC345571	rs6894797-G	0.047	9E-6	(Hip circumference change )	0.03	[NR] cm/y increase	Illumina [899892]	N
1390	chr5	105529138	105529139	rs962073	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	5q21.3	NR	rs962073-?	NR	2E-6	(AA)	6.08	[4.92-7.24]	Illumina [905956]	N
1390	chr5	105568786	105568787	rs78619372	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q21.3	NR	rs78619372-T	0.01394	9E-9	(STAT1)	0.09136	NR unit increase	Illumina [1671387] (imputed)	N
1390	chr5	105621890	105621891	rs142891837	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (severe respiratory symptoms vs population)	1,128 European ancestry cases, 679,531 European ancestry controls, 245 Hispanic or Latin American cases, 94,237 Hispanic or Latin American controls, 74 Black or African American cases, 22,383 Black or African American controls	NA	5q21.3		rs142891837-?	NR	2E-6		0.7320344	[0.43-1.03] unit increase	Illumina [9906551] (imputed)	N
1390	chr5	105621890	105621891	rs142891837	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (hospitalized covid vs population)	613 European ancestry cases, 680,416 European ancestry controls, 140 Hispanic or Latin American cases, 94,327 Hispanic or Latin American controls, 49 Black or African American cases, 22,410 Black or African American controls	NA	5q21.3		rs142891837-?	NR	9E-6		0.8658601	[0.49-1.25] unit increase	Illumina [9875426] (imputed)	N
1390	chr5	105621890	105621891	rs142891837	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid respiratory support vs population)	495 European ancestry cases, 680,440 European ancestry controls, 102 Hispanic or Latin American cases, 94,330 Hispanic or Latin American controls, 39 Black or African American cases, 22,410 Black or African American controls	NA	5q21.3		rs142891837-?	NR	1E-7		1.0589978	[0.67-1.45] unit increase	Illumina [9842460] (imputed)	N
1390	chr5	105621890	105621891	rs142891837	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid pneumonia vs population)	1,004 European ancestry cases, 680,354 European ancestry controls, 218 Hispanic or Latin American cases, 94,318 Hispanic or Latin American controls, 64 Black or African American cases, 22,412 Black or African American controls	NA	5q21.3		rs142891837-?	NR	8E-6		0.7266252	[0.41-1.04] unit increase	Illumina [9901720] (imputed)	N
1391	chr5	105652564	105652565	rs184566676	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	TRAIL levels	8,186 Finnish ancestry individuals	NA	5q21.3	NR	rs184566676-C		9E-6		0.4713	[0.24-0.7] SD units increase	NR [10700000] (imputed)	N
1391	chr5	105745615	105745616	rs111346824	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	5q21.3	NR	rs111346824-?	NR	3E-6	(Latino)	0.8801	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1391	chr5	105766610	105766611	rs6596669	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	5q21.3	NR	rs6596669-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
1392	chr5	105787373	105787373	rs141942267	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	5q21.3		rs141942267-GATATGGAACTATCATGATAGTCCA	NR	7E-11		0.0138	[0.0097-0.0179] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1392	chr5	105829354	105829355	rs148399119	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	5q21.3		rs148399119-G	0.013658612	3E-8		0.22817776	[0.15-0.31] unit decrease	Illumina [13134967] (imputed)	N
1392	chr5	105829354	105829355	rs148399119	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls, 49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	5q21.3		rs148399119-G	NR	3E-8		0.2282	[0.15-0.31] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1392	chr5	105870032	105870033	rs62379271	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		5q21.3	EFNA5	rs62379271-T	0.421389	2E-8		0.0078061	[0.0051-0.0105] unit decrease	Affymetrix [12370749]	N
1392	chr5	105870032	105870033	rs62379271	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	5q21.3	NR	rs62379271-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
1392	chr5	105870032	105870033	rs62379271	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	5q21.3		rs62379271-?	NR	6E-10				NR [~ 8900000] (imputed)	N
1392	chr5	105876805	105876806	rs11739877	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	5q21.3	NA	rs11739877-T	0.6231	4E-11		0.0116	[0.0081-0.0151] unit increase	NR [~ 27400000] (imputed)	N
1393	chr5	105906379	105906380	rs114652642	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Free cholesterol in small HDL meal response (OrNLSr)	4,292 individuals	NA	5q21.3		rs114652642-C	0.024749166	1E-8		0.425044	[0.28-0.57] unit decrease	Illumina [7701709] (imputed)	N
1393	chr5	105944932	105944933	rs6596684	29603369	Naito T	2018-03-30	J Gastroenterol Hepatol	Clinical and genetic risk factors for decreased bone mineral density in Japanese patients with inflammatory bowel disease.	Bone mineral density (femoral neck) in inflammatory bowel disease	254 Japanese ancestry cases	NA	5q21.3	Intergenic	rs6596684-G	NR	3E-6		0.3999	[NR] unit increase	Affymetrix [4384682] (imputed)	N
1393	chr5	105968182	105968183	rs9327968	29921221	Cha S	2018-06-19	BMC Genomics	Identification of five novel genetic loci related to facial morphology by genome-wide association studies.	Nose morphology	5,643 Korean ancestry individuals	up to 1,940 Korean ancestry individuals	5q21.3	LOC102467213, EFNA5	rs9327968-C	0.22	5E-8	(Nasal bridge angle)	0.52	[NR] unit decrease	Affymetrix [311944]	N
1393	chr5	106020809	106020810	rs184907247	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference	1,254 whole genome sequenced European ancestry individuals, 3,074 whole genome sequenced individuals, 29,716 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 701 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,050 Mylopotamos (founder/genetic isolate) individuals, 883 Pomak (founder/genetic isolate) individuals	205,909 European ancestry individuals	5q21.3	CTC-254B4.1	rs184907247-T	0.9856	9E-6		0.6649	[0.37-0.96] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1393	chr5	106024447	106024448	rs77044120	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Citrobacter A abundance in stool	5,959 Finnish ancestry individuals	NA	5q21.3		rs77044120-C	0.0109115	2E-9		0.207097	[0.14-0.27] unit increase	Illumina [7980478] (imputed)	N
1394	chr5	106143327	106143328	rs10900892	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Endometrial cancer (MTAG)	909 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	5q21.3	Intergenic	rs10900892-?		7E-6		1.03	[1.02-1.05]	Illumina [7645193] (imputed)	N
1394	chr5	106146862	106146863	rs67338857	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	5q21.3	Intergenic	rs67338857-A	0.3081	5E-8	(MTAG)	0.0078	[0.0051-0.0105] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1395	chr5	106264432	106264433	rs2454897	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	5q21.3	Intergenic	rs2454897-A	0.3145	2E-8	(MTAG)	0.0079	[0.0052-0.0106] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1395	chr5	106265124	106265125	rs2454899	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	5q21.3	LOC102467213	rs2454899-A	0.367	4E-7		0.034	[0.02-0.048] unit decrease	Affymetrix [7947838] (imputed)	N
1395	chr5	106278171	106278172	rs17159338	30134952	Traglia M	2018-08-22	Genome Med	Cross-genetic determination of maternal and neonatal immune mediators during pregnancy.	Neonatal cytokine/chemokine levels (maternal genetic effect)	790 Hispanic, European, Asian, South Asian or African American individuals	NA	5q21.3	EFNA5	rs17159338-C	0.03	1E-9	(IL-16)	0.36	[0.24-0.48] unit decrease	Affymetrix [629686]	N
1396	chr5	106311038	106311039	rs4357022	33568662	Dashti HS	2021-02-10	Nat Commun	Genetic determinants of daytime napping and effects on cardiometabolic health.	Daytime nap	452,633 European ancestry individuals	541,333 European ancestry individuals	5q21.3	EFNA5	rs4357022-G		2E-9		0.0051	[0.0033-0.0069] unit increase	Affymetrix [13304133] (imputed)	N
1396	chr5	106311875	106311876	rs62378355	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	5q21.3	EFNA5	rs62378355-A	0.634	1E-8		0.0100352	[0.0066-0.0135] unit decrease	Affymetrix [11880941] (imputed)	N
1396	chr5	106328325	106328326	rs4395620	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	5q21.3	NA	rs4395620-T	0.5756	4E-9		0.0106	[0.0071-0.0141] unit increase	NR [~ 27400000] (imputed)	N
1396	chr5	106377790	106377791	rs35727810	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	5q21.3	NR	rs35727810-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
1396	chr5	106377790	106377791	rs35727810	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	5q21.3		rs35727810-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1396	chr5	106379105	106379106	rs4382152	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	5q21.3	NA	rs4382152-T	0.6155	2E-9		0.0104	[0.0071-0.0137] unit increase	NR [~ 27400000] (imputed)	N
1396	chr5	106420588	106420589	rs4957528	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	5q21.3		rs4957528-A	0.217	5E-11		0.009	[0.007-0.011] unit decrease	NR [NR] (imputed)	N
1396	chr5	106420588	106420589	rs4957528	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	5q21.3		rs4957528-A	0.208	4E-9		0.015	[0.011-0.019] unit decrease	Affymetrix [up to 90000000] (imputed)	N
1396	chr5	106420588	106420589	rs4957528	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	5q21.3	NR	rs4957528-?	NR	1E-8	(cerebellar vermal lobules VIII X)			NR [9227495] (imputed)	N
1396	chr5	106420588	106420589	rs4957528	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	5q21.3		rs4957528-?	NR	7E-9				NR [~ 8900000] (imputed)	N
1396	chr5	106426579	106426580	rs74944897	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	5q21.3		rs74944897-G	NR	8E-9		0.0126	[0.0083-0.0169] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1396	chr5	106427608	106427609	rs6596717	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	5q21.3	LOC102467213	rs6596717-C	0.395	3E-9		1.04	[1.03-1.06]	Illumina [34740186] (imputed)	N
1396	chr5	106427608	106427609	rs6596717	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	5q21.3	LOC102467213, EFNA5	rs6596717-C	0.38	3E-6		1.03	[1.02-1.05]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1397	chr5	106454640	106454641	rs2410948	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	5q21.3	NR	rs2410948-G	0.581	1E-14		0.00843034	[0.0063-0.0106] unit increase	NR [9732723] (imputed)	N
1397	chr5	106454724	106454725	rs2410949	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure	35,269 European ancestry cases, 63,451 European ancestry controls	NA	5q21.3	NR	rs2410949-C	0.573451	8E-7		1.071	[1.04-1.1]	Affymetrix [7791636] (imputed)	N
1397	chr5	106455987	106455988	rs10060196	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	5q21.3	NR	rs10060196-A	0.580606	1E-12	(Conditioned on chr5:106825618)	0.018311577	[0.013-0.023] unit increase	NR [~ 10000000] (imputed)	N
1397	chr5	106471117	106471118	rs12651833	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	5q21.3	NA	rs12651833-C	0.8077	2E-9		0.0129	[0.0086-0.0172] unit increase	NR [~ 27400000] (imputed)	N
1397	chr5	106498926	106498927	rs7714719	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	5q21.3		rs7714719-C	0.8602	1E-8		0.0116	[0.0077-0.0155] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1397	chr5	106517289	106517290	rs6881127	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	5q21.3	NR	rs6881127-T	0.1058	2E-12				NR [9056863] (imputed)	N
1397	chr5	106552410	106552411	rs35748495	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	5q21.3	NR	rs35748495-?	NR	1E-8	(cerebellar vermal lobules VIII X)			NR [9227495] (imputed)	N
1397	chr5	106552410	106552411	rs35748495	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	5q21.3	Intergenic	rs35748495-T	0.1191	4E-10	(MTAG)	0.0159	[0.011-0.021] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1397	chr5	106553377	106553378	rs2410978	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	5q21.3	NR	rs2410978-?	NR	8E-7				Illumina [at least 7383741] (imputed)	N
1398	chr5	106566799	106566800	rs115569378	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	5q21.3	Intergenic	rs115569378-C	0.9072	9E-9		0.0224	[0.015-0.03] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1398	chr5	106603481	106603482	rs55993664	31926635	Coleman JRI	2019-11-01	Biol Psychiatry	The Genetics of the Mood Disorder Spectrum: Genome-wide Association Analyses of More Than 185,000 Cases and 439,000 Controls.	Bipolar disorder or major depressive disorder	164,933 European ancestry major depressive disorder cases, 20,352 European ancestry bipolar disorder cases, 439,741 European ancestry controls	NA	5q21.3	NR	rs55993664-C	NR	2E-8		1.0309278		NR [NR] (imputed)	N
1398	chr5	106628569	106628570	rs13184643	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	5q21.3	Intergenic	rs13184643-T	0.1034	2E-8	(MTAG)	0.0164	[0.011-0.022] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1398	chr5	106635451	106635452	rs34589	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	5q21.3	NR	rs34589-T	0.2493	5E-8				NR [9056863] (imputed)	N
1398	chr5	106648288	106648289	rs10464036	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	5q21.3		rs10464036-A	0.35	6E-9		5.82	z score increase	Affymetrix [9061022] (imputed)	N
1398	chr5	106657014	106657015	rs1559253	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	5q21.3	EFNA5	rs1559253-A	0.3588	5E-9		1.0219371		Affymetrix [11880941] (imputed)	N
1398	chr5	106660529	106660530	rs422261	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5q21.3	FBXL17	rs422261-?	NR	7E-6	(SM 22:1)	0.20804241	[0.12-0.3] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1398	chr5	106662211	106662212	rs56890592	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	5q21.3		rs56890592-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1398	chr5	106673503	106673504	rs78999617	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Subjective well-being	298,420 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	5q21.3	NR	rs78999617-T	0.9973	2E-6		0.185551	[0.11-0.26] unit increase	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
1398	chr5	106685562	106685563	rs1593022	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	5q21.3		rs1593022-T	0.2256	5E-9		0.0099	[0.0066-0.0132] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1399	chr5	106714685	106714686	rs72785807	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	5q21.3	NR	rs72785807-C	NR	4E-9		0.0361	[0.024-0.048] unit decrease	Affymetrix [9000000] (imputed)	N
1399	chr5	106724587	106724588	rs252817	20889312	Wang KS	2010-10-01	Schizophr Res	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	5q21.3	NR	rs252817-?	NR	2E-6		1.2431	[NR]	Affymetrix [722112]	N
1399	chr5	106767345	106767346	rs252991	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	5q21.3	Intergenic	rs252991-A	0.3795	2E-10	(MTAG)	0.0108	[0.0075-0.0141] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1399	chr5	106767345	106767346	rs252991	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	5q21.3		rs252991-A	0.3695	6E-11		0.0095	[0.0066-0.0124] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1399	chr5	106767345	106767346	rs252991	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	5q21.3	Intergenic	rs252991-A	0.3695	1E-12	(MTAG)	0.0096	[0.0069-0.0123] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1399	chr5	106773622	106773623	rs2283	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	5q21.3	EFNA5	rs2283-?	NR	1E-9		0.012567089	[0.0085-0.0166] unit decrease	NR [7306098]	N
1399	chr5	106774921	106774922	rs152603	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	5q21.3	NR	rs152603-A	0.6452	2E-8		0.013042093	NR unit decrease	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
1399	chr5	106776117	106776118	rs152602	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	5q21.3		rs152602-C	0.3358	7E-7		34.101864	z score increase	NR [6814003]	N
1399	chr5	106779304	106779305	rs152599	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	5q21.3	EFNA5	rs152599-T	0.3674	2E-8		0.01160104	[0.0075-0.0157] unit increase	Affymetrix [up to 18485882] (imputed)	N
1399	chr5	106788816	106788817	rs71575441	31212010	Cabana-Dominguez J	2019-06-15	Prog Neuropsychopharmacol Biol Psychiatry	Genome-wide association meta-analysis of cocaine dependence: Shared genetics with comorbid conditions.	Cocaine dependence	2,085 European ancestry cases, 4,293 European ancestry controls	NA	5q21.3	EFNA5	rs71575441-T	NR	2E-6		0.6574	[0.38-0.93] unit increase	Illumina [9290362] (imputed)	N
1399	chr5	106793982	106793983	rs3909931	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	5q21.3	NR	rs3909931-?	NR	2E-6		4.74	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1399	chr5	106809780	106809780	rs11405774	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	5q21.3	NR	rs11405774-GT	NR	8E-11		0.0419	[0.029-0.054] unit decrease	Affymetrix [9000000] (imputed)	N
1399	chr5	106822907	106822908	rs25981	30531941	Doherty A	2018-12-10	Nat Commun	GWAS identifies 14 loci for device-measured physical activity and sleep duration.	Sedentary behaviour duration	91,105 European ancestry individuals	NA	5q21.3	EFNA5	rs25981-G	0.531	3E-9		0.028	[0.018-0.038] SD units increase	NR [9926106] (imputed)	N
1400	chr5	106825617	106825618	rs72789626	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking initiation (ever regular vs never regular)	up to 433,216 European ancestry individuals	NA	5q21.3	EFNA5	rs72789626-A	0.138	2E-9		0.0198	[0.013-0.026] unit decrease	Illumina [~ 250000] (imputed)	N
1400	chr5	106825617	106825618	rs72789626	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	5q21.3	NR	rs72789626-A	0.136	1E-15		0.0126009	[0.0095-0.0157] unit decrease	NR [9732723] (imputed)	N
1400	chr5	106825617	106825618	rs72789626	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	5q21.3	NR	rs72789626-A	0.136	5E-12		0.025643114	[0.018-0.033] unit decrease	NR [~ 10000000] (imputed)	N
1400	chr5	106825617	106825618	rs72789626	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	5q21.3	NR	rs72789626-A	0.133	4E-10		0.0134428	[0.0092-0.0177] unit increase	NR [9732723] (imputed)	N
1400	chr5	106837449	106837450	rs26251	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	5q21.3	EFNA5	rs26251-T	0.6294	1E-10		0.013416571	[0.0093-0.0175] unit increase	Affymetrix [11514654] (imputed)	N
1400	chr5	106849673	106849674	rs152555	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	5q21.3	NR	rs152555-G	0.1456	5E-10		1.0537407	[1.04-1.07]	Affymetrix, Illumina [NR] (imputed)	N
1400	chr5	106855829	106855830	rs250252	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	5q21.3	NR	rs250252-A	NR	3E-13		0.0243	[0.018-0.031] unit increase	Affymetrix [9000000] (imputed)	N
1400	chr5	106856405	106856406	rs10491395	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	5q21.3	NR	rs10491395-G	NR	5E-13		0.0239	[0.017-0.03] unit increase	Affymetrix [9000000] (imputed)	N
1400	chr5	106857176	106857178	rs56039409	34112972	DeMichele-Sweet MAA	2021-06-10	Mol Psychiatry	Genome-wide association identifies the first risk loci for psychosis in Alzheimer disease.	Psychosis in Alzheimer's disease	4,551 European ancestry cases, 5,796 European ancestry controls, 894 African American or unknown ancestry cases, 1,076 African American or unknown ancestry controls	NA	5q21.3		rs56039409-CTA	NR	3E-6		1.15	[1.08-1.22]	Illumina [7105229] (imputed)	N
1400	chr5	106861891	106861892	rs388016	33568662	Dashti HS	2021-02-10	Nat Commun	Genetic determinants of daytime napping and effects on cardiometabolic health.	Daytime nap	452,633 European ancestry individuals	541,333 European ancestry individuals	5q21.3	EFNA5	rs388016-A		7E-9		0.0053	[0.0035-0.0071] unit increase	Affymetrix [13304133] (imputed)	N
1400	chr5	106862777	106862778	rs848828	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	5q21.3		rs848828-T	0.663	8E-9		0.007	[0.005-0.009] unit increase	NR [NR] (imputed)	N
1400	chr5	106863714	106863715	rs464250	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (Multivariate)	1,390 European ancestry individuals	NA	5q21.3		rs464250-?	NR	6E-6	(MLM)			Illumina [~ 9000000] (imputed)	N
1400	chr5	106877107	106877108	rs62355615	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	5q21.3	NR	rs62355615-?	NR	8E-9				Affymetrix [~ 8270000] (imputed)	N
1400	chr5	106877107	106877108	rs62355615	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	5q21.3		rs62355615-?	NR	7E-9				NR [~ 8900000] (imputed)	N
1400	chr5	106878791	106878792	rs6879279	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	5q21.3		rs6879279-C	NR	2E-44		0.0395	[0.034-0.045] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
1400	chr5	106878791	106878792	rs6879279	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	5q21.3		rs6879279-C	NR	1E-11		0.0191	[0.014-0.025] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
1400	chr5	106878791	106878792	rs6879279	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Aspartate aminotransferase levels	386,570 British ancestry individuals, 10,617 Asian or Asian British individuals, 7,426 Black or Black British individuals, 2,321 Chinese ancestry individuals	NA	5q21.3	EFNA5	rs6879279-?	NR	5E-9		0.0017	[0.00092-0.00248] unit decrease	Affymetrix [21347608] (imputed)	N
1400	chr5	106878791	106878792	rs6879279	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Alanine aminotransferase levels	387,859 British ancestry individuals, 10,635 Asian or Asian British individuals, 7,468 Black or Black British individuals, 2,338 Chinese ancestry individuals	NA	5q21.3	EFNA5	rs6879279-?	NR	5E-13		0.0035	[0.0023-0.0047] unit decrease	Affymetrix [21347608] (imputed)	N
1400	chr5	106878791	106878792	rs6879279	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	5q21.3	EFNA5	rs6879279-G	0.846427	7E-61		0.0116648	[0.01-0.013] unit increase	Affymetrix [13995440] (imputed)	N
1400	chr5	106878791	106878792	rs6879279	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	5q21.3	EFNA5	rs6879279-G	0.85	6E-11		6.55	z-score increase	Affymetrix [4312306] (imputed)	N
1400	chr5	106878791	106878792	rs6879279	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	5q21.3	NR	rs6879279-C	NR	1E-11		0.0221	[0.016-0.029] unit decrease	Affymetrix [9000000] (imputed)	N
1400	chr5	106885441	106885442	rs341274	31738830	McGraw KL	2019-11-01	Blood Adv	Non-del(5q) myelodysplastic syndromes-associated loci detected by SNP-array genome-wide association meta-analysis.	Non-del(5q) myelodysplastic syndromes	907 European ancestry cases, 5,605 European ancestry controls	NA	5q21.3	EFNA5	rs341274-A	0.22	4E-6		1.35	[1.19-1.53]	Affymetrix [7515136] (imputed)	N
1400	chr5	106897432	106897433	rs59130650	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	5q21.3	NR	rs59130650-T	NR	8E-10		0.0216	[0.015-0.028] unit decrease	Affymetrix [9000000] (imputed)	N
1400	chr5	106899683	106899684	rs37445	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	5q21.3	NR	rs37445-G	0.6095	5E-9		1.0362694	[1.02-1.05]	Affymetrix, Illumina [NR] (imputed)	N
1400	chr5	106913483	106913484	rs607976	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	5q21.3		rs607976-T	0.49	1E-8		5.67	z score increase	Affymetrix [9061022] (imputed)	N
1400	chr5	106914026	106914027	rs641406	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	5q21.3		rs641406-G	0.49	2E-11		6.72	z score increase	Affymetrix [9061022] (imputed)	N
1400	chr5	106917867	106917868	rs6894162	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	5q21.3		rs6894162-G	0.36	1E-9		6.09	z score increase	Affymetrix [9061022] (imputed)	N
1400	chr5	106917867	106917868	rs6894162	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	5q21.3	NR	rs6894162-G	0.3478	4E-10				NR [9056863] (imputed)	N
1400	chr5	106918328	106918329	rs71575448	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	5q21.3	NR	rs71575448-A	0.8602	3E-9		1.052	[1.03-1.07]	Affymetrix, Illumina [NR] (imputed)	N
1400	chr5	106919233	106919234	rs10479400	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	5q21.3	NR	rs10479400-?	NR	1E-9	(cerebellar vermal lobules VIII X)			NR [9227495] (imputed)	N
1400	chr5	106936434	106936435	rs2406374	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	5q21.3		rs2406374-C	0.688	8E-12		0.009	[0.007-0.011] unit increase	NR [NR] (imputed)	N
1400	chr5	106936434	106936435	rs2406374	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	5q21.3	EFNA5	rs2406374-C	0.685596	4E-10		0.0138855	[0.0095-0.0182] unit decrease	NR [16516521] (imputed)	N
1401	chr5	106955450	106955451	rs13163062	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	5q21.3		rs13163062-T	0.426	4E-16		0.0115	[0.0088-0.0142] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1401	chr5	106955450	106955451	rs13163062	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	5q21.3	Intergenic	rs13163062-T	0.426	8E-17	(MTAG)	0.011	[0.0085-0.0135] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1401	chr5	106965312	106965313	rs55754532	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	5q21.3		rs55754532-A	0.6005	8E-13	(conditional-joint)	0.0103	[0.0076-0.013] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1401	chr5	106965312	106965313	rs55754532	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	5q21.3	NR	rs55754532-?	NR	5E-6		0.0079808	[0.0046-0.0114] unit decrease	Affymetrix [805426] (imputed)	N
1401	chr5	106982559	106982560	rs10074258	19668339	Potkin SG	2009-08-07	PLoS One	Hippocampal atrophy as a quantitative trait in a genome-wide association study identifying novel susceptibility genes for Alzheimer's disease.	Hippocampal atrophy	162 European ancestry cases, 192 European ancestry controls, 7 African American cases, 14 African American controls, 1 Asian ancestry cases, 3 Asian ancestry controls, 2 cases	NA	5q21.3	EFNA5	rs10074258-?	NR	2E-7				Illumina [516645]	N
1401	chr5	107005664	107005665	rs77199804	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Medial orbital frontal cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	5q21.3	EFNA5	rs77199804-?		4E-6				Illumina [4322238] (imputed)	N
1401	chr5	107005909	107005910	rs62357862	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	5q21.3	Intergenic	rs62357862-A	0.0955	1E-9	(MTAG)	0.0186	[0.013-0.024] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1401	chr5	107005909	107005910	rs62357862	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	5q21.3	Intergenic	rs62357862-G	0.9045	1E-8		0.0189	[0.012-0.025] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1401	chr5	107032707	107032708	rs7724655	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	5q21.3	Intergenic	rs7724655-T	0.5576	2E-11	(MTAG)	0.0112	[0.0079-0.0145] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1401	chr5	107032707	107032708	rs7724655	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	5q21.3	Intergenic	rs7724655-T	0.5607	3E-9	(MTAG)	0.0137	[0.0092-0.0182] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1401	chr5	107050001	107050002	rs13161115	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	5q21.3	NR	rs13161115-?	NR	5E-9	(cerebellar vermal lobules VIII X)			NR [9227495] (imputed)	N
1401	chr5	107050001	107050002	rs13161115	27798627	Barban N	2016-10-31	Nat Genet	Genome-wide analysis identifies 12 loci influencing human reproductive behavior.	Number of children ever born	103,909 European ancestry men		5q21.3	EFNA5, FBXL17	rs13161115-C	0.234	1E-8		0.041	NR unit decrease	NR [2400000] (imputed)	N
1401	chr5	107051081	107051082	rs154168	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	5q21.3	NR	rs154168-?	NR	6E-7		4.986	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1401	chr5	107058989	107058990	rs256490	28808816	Xu C	2017-08-14	Biogerontology	A genome-wide association study of cognitive function in Chinese adult twins.	Cognitive function	139 Chinese ancestry dizygotic twin pairs	NA	5q21.3	LOC345576	rs256490-?		7E-6				Illumina [1048575]	N
1401	chr5	107066646	107066647	rs187925556	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	CTACK levels	3,631 Finnish ancestry individuals	NA	5q21.3	NR	rs187925556-G	NR	5E-6		0.2905	[0.17-0.42] SD units increase	NR [10700000] (imputed)	N
1401	chr5	107079740	107079742	rs72134357	31194736	Tiensuu H	2019-06-13	PLoS Genet	Risk of spontaneous preterm birth and fetal growth associates with fetal SLIT2.	Moderate-to-late spontaneous preterm birth	75 Finnish ancestry infant cases, 419 Finnish ancestry infant controls	NA	5q21.3	EFNA5, FBXL17	rs72134357-?	NR	4E-6		2.23		Illumina [6778521] (imputed)	N
1401	chr5	107083486	107083487	rs1352724	31235808	Shungin D	2019-06-24	Nat Commun	Genome-wide analysis of dental caries and periodontitis combining clinical and self-reported data.	Number of decayed, missing and filled tooth surfaces or use of dentures	14,976 European ancestry individuals with decayed, missing or filled tooth surface measurement, 11,816 Hispanic/Latino individuals with decayed, missing or filled tooth surface measurement, 77,714 European ancestry dentures cases, 383,317 European ancestry controls	NA	5q21.3	EFNA5	rs1352724-A	0.22	4E-8		0.018	[0.012-0.024] unit decrease	Affymetrix, Illumina [~ 8900000] (imputed)	N
1401	chr5	107083486	107083487	rs1352724	31235808	Shungin D	2019-06-24	Nat Commun	Genome-wide analysis of dental caries and periodontitis combining clinical and self-reported data.	Dentures	77,714 European ancestry cases, 383,317 European ancestry controls	NA	5q21.3	EFNA5	rs1352724-A	0.22	3E-8		0.037	[0.024-0.05] unit decrease	Affymetrix [at least 8900000] (imputed)	N
1402	chr5	107103562	107103563	rs1592907	34838041	Naderi E	2021-11-27	J Transl Med	A two-stage genome-wide association study of radiation-induced acute toxicity in head and neck cancer.	radiation-induced toxicity (patient-rated acute xerostomia)	802 Dutch ancestry individuals	241 Dutch ancestry individuals	5q21.3		rs1592907-A	NR	2E-7		0.13243566	[0.082-0.183] increase	Illumina [6334277] (imputed)	N
1402	chr5	107103562	107103563	rs1592907	33691233	Peterson RE	2021-02-18	J Psychiatr Res	Genome-wide analyses of smoking behaviors in schizophrenia: Findings from the Psychiatric Genomics Consortium.	smoking initiation in schizophrenia	5,255 European ancestry individuals	1,802 East Asian individuals	5q21.3	FBXL17	rs1592907-?	NR	9E-7				NR [9500000] (imputed)	N
1402	chr5	107111175	107111176	rs1422438	23419831	Ramanan VK	2013-02-19	Mol Psychiatry	APOE and BCHE as modulators of cerebral amyloid deposition: a florbetapir PET genome-wide association study.	Alzheimer's disease biomarkers	555 European ancestry individuals	NA	5q21.3	EFNA5	rs1422438-G	0.30	6E-7	(Cortical Ab)			Illumina [6108668] (imputed)	N
1402	chr5	107112115	107112116	rs17367725	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	5q21.3	NR	rs17367725-C	0.6487	9E-9		1.0362694	[1.02-1.05]	Affymetrix, Illumina [NR] (imputed)	N
1402	chr5	107145323	107145324	rs55876360	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	5q21.3	Intergenic	rs55876360-T	0.8645	9E-9	(MTAG)	0.011	[0.0073-0.0147] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1402	chr5	107151331	107151332	rs113089229	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Monocyte chemoattractant protein-1 levels	8,293 Finnish ancestry individuals	NA	5q21.3	NR	rs113089229-C		8E-6		0.1856	[0.1-0.27] SD units decrease	NR [10700000] (imputed)	N
1402	chr5	107170147	107170148	rs62358087	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	5q21.3	RN7SKP122	rs62358087-A	NR	3E-8		5.564	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1402	chr5	107173192	107173193	rs12189452	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	5q21.3	FBXL17	rs12189452-?	NR	6E-9		0.015964694	[0.011-0.021] unit decrease	NR [7306098]	N
1402	chr5	107173192	107173193	rs12189452	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	5q21.3	FBXL17	rs12189452-A	NR	5E-9		0.022484494	[0.015-0.03] unit decrease	Affymetrix [NR]	N
1402	chr5	107197724	107197725	rs57585211	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	5q21.3	NR	rs57585211-?		4E-9		0.0167329	[0.011-0.022] unit decrease	Affymetrix [19400418] (imputed)	N
1402	chr5	107209813	107209814	rs8180457	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	5q21.3	NR	rs8180457-C	0.8427	1E-11		1.0570824	[1.04-1.07]	Affymetrix, Illumina [NR] (imputed)	N
1403	chr5	107223375	107223376	rs4957727	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	5q21.3	NA	rs4957727-G	0.8425	3E-8	(Male)	1.0764263	[1.05-1.10]	Affymetrix, Illumina [NR] (imputed)	N
1403	chr5	107256584	107256585	rs982102	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	5q21.3	Intergenic	rs982102-A	0.1296	2E-9	(MTAG)	0.0205	[0.014-0.027] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1403	chr5	107271417	107271418	rs17437183	34050765	Zhang L	2021-05-29	J Clin Endocrinol Metab	Joint genome-wide association analyses identified 49 novel loci for age at natural menopause.	Age at menopause	181,219 European ancestry individuals, 43,861 East Asian ancestry individuals	NA	5q21.3		rs17437183-T	0.1	4E-8		0.12	unit decrease	Illumina [2093892] (imputed)	N
1403	chr5	107271417	107271418	rs17437183	34050765	Zhang L	2021-05-29	J Clin Endocrinol Metab	Joint genome-wide association analyses identified 49 novel loci for age at natural menopause.	Age at menopause	181,219 European ancestry individuals	NA	5q21.3		rs17437183-T	0.1	8E-7		0.11	unit decrease	Illumina [2398641] (imputed)	N
1403	chr5	107281620	107281621	rs10070308	24322204	Winham SJ	2013-12-10	Mol Psychiatry	Genome-wide association study of bipolar disorder accounting for effect of body mass index identifies a new risk allele in TCF7L2.	Bipolar disorder (body mass index interaction)	388 European ancestry cases, 1,020 European ancestry controls	NA	5q21.3	FBXL17	rs10070308-?	NR	4E-6				NR [up to 8466825] (imputed)	N
1403	chr5	107282347	107282348	rs72795979	24322204	Winham SJ	2013-12-10	Mol Psychiatry	Genome-wide association study of bipolar disorder accounting for effect of body mass index identifies a new risk allele in TCF7L2.	Bipolar disorder (body mass index interaction)	388 European ancestry cases, 1,020 European ancestry controls	NA	5q21.3	NR	rs72795979-?	NR	3E-6				NR [up to 8466825] (imputed)	N
1403	chr5	107282348	107282349	rs72795980	24322204	Winham SJ	2013-12-10	Mol Psychiatry	Genome-wide association study of bipolar disorder accounting for effect of body mass index identifies a new risk allele in TCF7L2.	Bipolar disorder (body mass index interaction)	388 European ancestry cases, 1,020 European ancestry controls	NA	5q21.3	NR	rs72795980-?	NR	2E-6				NR [up to 8466825] (imputed)	N
1403	chr5	107313778	107313779	rs10040110	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	5q21.3	NA	rs10040110-T		3E-12		0.012887	[0.0093-0.0165] unit increase	Illumina [13288253] (imputed)	N
1403	chr5	107316862	107316863	rs2916577	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	5q21.3	NA	rs2916577-A	0.849	7E-22		0.0224	[0.018-0.027] unit increase	NR [~ 27400000] (imputed)	N
1403	chr5	107320881	107320882	rs13157529	31028280	Ierodiakonou D	2019-04-26	J Expo Sci Environ Epidemiol	Pathway analysis of a genome-wide gene by air pollution interaction study in asthmatic children.	Post-bronchodilator FEV1 x air pollution (NO2) interaction in childhood asthma	522 European ancestry children	88 African-American children	5q21.3	NR	rs13157529-T		6E-6	(EA)	1.08	unit decrease	Illumina [474792]	N
1403	chr5	107322328	107322329	rs17160804	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	5q21.3	NR	rs17160804-?	NR	8E-10				Affymetrix [~ 8270000] (imputed)	N
1403	chr5	107325185	107325186	rs10900901	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Cigarettes smoked per day (MTAG)	up to 403,928 European ancestry individuals	NA	5q21.3	NR	rs10900901-C	0.293	2E-8		0.0134093	[0.0087-0.0181] unit increase	NR [9732723] (imputed)	N
1403	chr5	107329127	107329128	rs9328026	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5q21.3	EFNA5	rs9328026-?	NR	9E-6	(TAG 54:8)	0.14781897	[0.083-0.213] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1403	chr5	107337345	107337346	rs12513616	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	5q21.3	NR	rs12513616-?	NR	5E-11				Affymetrix [~ 8270000] (imputed)	N
1404	chr5	107348179	107348180	rs288183	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	5q21.3		rs288183-G	NR	4E-9		0.0158	[0.011-0.021] unit decrease	Affymetrix, Illumina [20529698] (imputed)	N
1404	chr5	107348179	107348180	rs288183	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	5q21.3	NR	rs288183-T	0.824809	7E-9		0.0155055	[0.01-0.021] unit increase	NR [NR]	N
1404	chr5	107351516	107351517	rs288178	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	5q21.3		rs288178-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1404	chr5	107352078	107352079	rs288175	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	5q21.3	FBXL17	rs288175-A	0.3298	1E-8		0.012248558	[0.0081-0.0164] unit decrease	Affymetrix [11514654] (imputed)	N
1404	chr5	107365641	107365642	rs17165769	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	5q21.3	NR	rs17165769-G	0.394872	1E-9	(Conditioned on chr5:106455988, chr5:106825618)	0.015939606	[0.011-0.021] unit increase	NR [~ 10000000] (imputed)	N
1404	chr5	107370766	107370767	rs1024975	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	5q21.3		rs1024975-T	0.617	9E-13		0.009	[0.007-0.011] unit decrease	NR [NR] (imputed)	N
1404	chr5	107370766	107370767	rs1024975	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	5q21.3	NR	rs1024975-C	0.396	7E-13		0.00790159	[0.0057-0.0101] unit increase	NR [9732723] (imputed)	N
1404	chr5	107370766	107370767	rs1024975	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	5q21.3	NR	rs1024975-C	0.392	2E-9		0.00892094	[0.006-0.0118] unit decrease	NR [9732723] (imputed)	N
1404	chr5	107373989	107373989	rs148372488	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	5q21.3		rs148372488-AACAGGACTGTATG	NR	5E-8		0.0149	[0.0096-0.0202] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
1404	chr5	107397214	107397215	rs7729356	25201988	Rietveld CA	2014-09-08	Proc Natl Acad Sci U S A	Common genetic variants associated with cognitive performance identified using the proxy-phenotype method.	Educational attainment	106,736 European ancestry individuals	NA	5q21.3	intergenic	rs7729356-A	0.341	4E-6		0.021	[NR] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1404	chr5	107400504	107400505	rs288139	23118974	Candille SI	2012-10-31	PLoS One	Genome-wide association studies of quantitatively measured skin, hair, and eye pigmentation in four European populations.	Eye color	175 European ancestry individuals	293 European ancestry individuals	5q21.3	FBXL17	rs288139-A	0.21	1E-6	(Eye color)	0.206	[0.12-0.29] unit increase	Illumina [313763]	N
1404	chr5	107401450	107401451	rs11242661	22952603	Hart AB	2012-08-28	PLoS One	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 10 individuals	NA	5q21.3	FBXL17	rs11242661-?	NR	1E-6	(SF9)			Affymetrix [5476100] (imputed)	N
1404	chr5	107419547	107419548	rs288232	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	5q21.3	FBXL17	rs288232-C	0.827	4E-6	(EA)	0.023	[0.013-0.032] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1404	chr5	107419547	107419548	rs288232	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	5q21.3	FBXL17	rs288232-C	0.827	3E-6		0.023	[0.013-0.032] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1404	chr5	107422066	107422067	rs288230	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	5q21.3	NA	rs288230-T	0.8394	5E-26		0.0238	[0.019-0.028] unit increase	NR [~ 27400000] (imputed)	N
1404	chr5	107422066	107422067	rs288230	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	5q21.3	NA	rs288230-T	0.8394	5E-26		0.0238	[0.019-0.028] unit increase	NR [~ 27400000] (imputed)	N
1404	chr5	107424307	107424308	rs158172	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	5q21.3		rs158172-G	NR	6E-10		0.0116	[0.0079-0.0153] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1404	chr5	107438056	107438057	rs149457	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		5q21.3	FBXL17	rs149457-C	0.82989	2E-16		0.0150324	[0.011-0.019] unit increase	Affymetrix [12370749]	N
1404	chr5	107438056	107438057	rs149457	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	5q21.3		rs149457-?	NR	2E-24				NR [~ 8900000] (imputed)	N
1404	chr5	107439011	107439012	rs40067	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	5q21.3	NR	rs40067-A	0.1689	2E-13		0.024457105	[0.018-0.031] unit decrease	Affymetrix [10549349] (imputed)	N
1404	chr5	107439011	107439012	rs40067	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	5q21.3	NR	rs40067-G	NR	2E-7		0.02	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
1404	chr5	107439011	107439012	rs40067	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	5q21.3	FBXL17	rs40067-A	0.1702	2E-9		0.002	[0.0012-0.0028] unit increase	Affymetrix [15275733] (imputed)	N
1404	chr5	107439011	107439012	rs40067	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	5q21.3	FBXL17	rs40067-G	0.8333	1E-6	(EA)	0.0325	[0.019-0.046] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1404	chr5	107439011	107439012	rs40067	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	5q21.3	FBXL17	rs40067-G	0.8333	1E-6		0.0325	[0.019-0.046] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1404	chr5	107439011	107439012	rs40067	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	5q21.3	FBXL17	rs40067-?	NR	3E-8	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1404	chr5	107439011	107439012	rs40067	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	5q21.3	FBXL17	rs40067-?	NR	2E-7				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1404	chr5	107439011	107439012	rs40067	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	5q21.3	FBXL17	rs40067-G	0.8333	6E-6	(EA, women)	0.0346	[0.02-0.049] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1404	chr5	107439011	107439012	rs40067	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	5q21.3	FBXL17	rs40067-G	0.8333	5E-6	(women)	0.0347	[0.02-0.05] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1404	chr5	107439011	107439012	rs40067	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	5q21.3	FBXL17	rs40067-G	0.8333	1E-8	(EA)	0.0346	[0.023-0.047] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1404	chr5	107439011	107439012	rs40067	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	5q21.3	FBXL17	rs40067-G	0.8333	1E-8		0.0346	[0.023-0.047] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1404	chr5	107440855	107440856	rs158186	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	5q21.3	EFNA5	rs158186-A	0.144220513706492	1E-8		0.026278006	unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1404	chr5	107458636	107458637	rs286809	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	5q21.3	FBXL17	rs286809-A	0.1707	1E-9		0.1391	[0.094-0.184] unit decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1404	chr5	107459375	107459376	rs286808	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	5q21.3		rs286808-T	0.4746	4E-9		0.013	[0.0091-0.0169] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
1404	chr5	107459528	107459529	rs12652687	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	5q21.3	FBXL17	rs12652687-C	0.1447	4E-8		5.509	NR z score decrease	Illumina [26237160] (imputed)	N
1404	chr5	107469178	107469179	rs547840497	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	7,894 Sub-Saharan African ancestry individuals	NA	5q21.3		rs547840497-T	0.98553	3E-7		0.0410076	[0.025-0.057] unit decrease	Illumina [13900000] (imputed)	N
1404	chr5	107469178	107469179	rs547840497	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,931 Sub-Saharan African ancestry males	NA	5q21.3		rs547840497-T	0.985627	2E-7		0.0617874	[0.039-0.085] unit decrease	Illumina [13900000] (imputed)	N
1404	chr5	107469683	107469684	rs34410	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	5q21.3	Intergenic	rs34410-C	0.4585	2E-11	(MTAG)	0.0111	[0.0078-0.0144] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1404	chr5	107469683	107469684	rs34410	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	5q21.3		rs34410-C	0.4628	4E-9		0.0083	[0.0056-0.011] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1404	chr5	107469683	107469684	rs34410	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	5q21.3	Intergenic	rs34410-C	0.4628	6E-12	(MTAG)	0.009	[0.0065-0.0115] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1404	chr5	107475978	107475979	rs185361	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	5q21.3	NR	rs185361-?	NR	3E-23				Affymetrix [~ 8270000] (imputed)	N
1404	chr5	107478679	107478679	rs10623997	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	5q21.3		rs10623997-TATAATA	NR	5E-19		0.0251	[0.02-0.031] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1404	chr5	107478679	107478679	rs10623997	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	5q21.3		rs10623997-T	0.76	2E-8				NR [NR] (imputed)	N
1404	chr5	107478679	107478679	rs10623997	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	5q21.3		rs10623997-T	0.76	2E-16		0.015	% increase	NR [NR] (imputed)	N
1404	chr5	107478679	107478679	rs10623997	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Alanine aminotransferase levels	429,203 European ancestry individuals	NA	5q21.3		rs10623997-T	0.76	2E-7		0.013	U/L increase	NR [NR] (imputed)	N
1405	chr5	107484298	107484299	rs150964875	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	5q21.3	FBXL17	rs150964875-T	0.9955	3E-6		0.3785	[0.22-0.54] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1405	chr5	107495172	107495173	rs34427	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	5q21.3		rs34427-A	NR	2E-9		0.0139	[0.0094-0.0184] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1405	chr5	107512535	107512536	rs6596771	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Irritable mood	366,726 European ancestry individuals	NA	5q21.3	FBXL17	rs6596771-A	0.486736	2E-9		5.96	z score decrease	NR [~ 10847151] (imputed)	N
1405	chr5	107513702	107513703	rs10463586	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	5q21.3	FBXL17	rs10463586-T	0.479508	5E-9		5.86	z score increase	NR [10847151] (imputed)	N
1405	chr5	107519403	107519404	rs286768	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	5q21.3	Intergenic	rs286768-T	0.6679	6E-9	(MTAG)	0.0141	[0.0094-0.0188] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1405	chr5	107556701	107556702	rs2966805	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	5q21.3		rs2966805-G	0.32	7E-13		7.18	z score increase	Affymetrix [9061022] (imputed)	N
1405	chr5	107556701	107556702	rs2966805	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	5q21.3	NR	rs2966805-G	0.3123	4E-8				NR [9056863] (imputed)	N
1405	chr5	107560768	107560769	rs56044682	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q21.3	NR	rs56044682-T	0.15591	1E-10				Affymetrix, Illumina [20825802] (imputed)	N
1405	chr5	107570358	107570359	rs552690895	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	7,894 Sub-Saharan African ancestry individuals	NA	5q21.3		rs552690895-G	0.984178	3E-8		0.0428127	[0.028-0.058] unit decrease	Illumina [13900000] (imputed)	N
1405	chr5	107570358	107570359	rs552690895	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,931 Sub-Saharan African ancestry males	NA	5q21.3		rs552690895-G	0.984158	2E-6		0.054453	[0.033-0.076] unit decrease	Illumina [13900000] (imputed)	N
1405	chr5	107570784	107570785	rs2922434	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	5q21.3	NR	rs2922434-?	NR	2E-6		4.721	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1405	chr5	107571901	107571902	rs73214528	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	5q21.3		rs73214528-T	NR	1E-8		0.0117	[0.0076-0.0158] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
1405	chr5	107574366	107574367	rs2416528	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	5q21.3	NR	rs2416528-G	0.163363	3E-10		0.01552	[0.011-0.02] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
1405	chr5	107584778	107584779	rs11242664	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q21.3	NR	rs11242664-G	0.157466	5E-11				Affymetrix, Illumina [24246363] (imputed)	N
1405	chr5	107594357	107594358	rs6870480	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	5q21.3	FBXL17	rs6870480-C	0.165997	2E-9		0.0167512	[0.011-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1406	chr5	107622551	107622552	rs10071595	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Irritable mood	366,726 European ancestry individuals	NA	5q21.3	NR	rs10071595-A	0.486061	2E-8		5.62	z score decrease	NR [~ 10847151] (imputed)	N
1406	chr5	107648199	107648201	rs200293490	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q21.3	NR	rs200293490-C	0.0122	4E-9	(MT1H)	0.05794	NR unit increase	Illumina [1671387] (imputed)	N
1406	chr5	107694303	107694304	rs34019963	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	5q21.3	NR	rs34019963-?	NR	6E-7		5.008	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1406	chr5	107706510	107706511	rs10477894	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	5q21.3	NR	rs10477894-A	NR	2E-8		5.574	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1406	chr5	107707330	107707331	rs11744374	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	5q21.3	NCKAP5	rs11744374-?		4E-9				NR [7428630] (imputed)	N
1406	chr5	107721365	107721366	rs11240962	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	5q21.3	NR	rs11240962-A	NR	1E-10		6.415	z score increase	Affymetrix [10847151] (imputed)	N
1406	chr5	107722148	107722149	rs10045508	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	5q21.3	FBXL17	rs10045508-T	NR	5E-9		0.010508	[0.007-0.014] unit increase	Affymetrix [18485882] (imputed)	N
1406	chr5	107722148	107722149	rs10045508	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	5q21.3		rs10045508-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1406	chr5	107731009	107731010	rs10078397	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	5q21.3	intergenic	rs10078397-A	0.23068	1E-10		6.443	z score increase	Illumina [18485882] (imputed)	N
1406	chr5	107731683	107731684	rs4634342	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Irritable mood	366,726 European ancestry individuals	NA	5q21.3	FBXL17	rs4634342-T	0.361752	1E-8		5.73	z score decrease	NR [~ 10847151] (imputed)	N
1406	chr5	107731957	107731958	rs1001579	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	5q21.3	NR	rs1001579-G	0.167464012461059	7E-6	(IGP43)	0.182	[0.1-0.26] unit increase	Illumina [~ 2500000] (imputed)	N
1406	chr5	107738000	107738001	rs4413518	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Neuroticism	274,107 British ancestry individuals	NA	5q21.3	NR	rs4413518-A	0.2189	1E-10		0.01234	[0.0086-0.0161] unit increase	NR [8968716] (imputed)	N
1406	chr5	107739974	107739975	rs13163891	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	5q21.3	FBXL17	rs13163891-C	NR	5E-9		0.010283	[0.0068-0.0137] unit decrease	Affymetrix [18485882] (imputed)	N
1406	chr5	107739974	107739975	rs13163891	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	5q21.3	NR	rs13163891-A	NR	2E-8		5.65	z score decrease	Affymetrix [10847151] (imputed)	N
1407	chr5	107747446	107747447	rs9326726	27798624	Eppinga RN	2016-10-31	Nat Genet	Identification of genomic loci associated with resting heart rate and shared genetic predictors with all-cause mortality.	Resting heart rate	127,919 European ancestry individuals, 2,478 Asian ancestry individuals, 1,734 Black individuals, 684 Mixed ancestry individuals, 1,436 individuals	130,795 European ancestry individuals	5q21.3	NR	rs9326726-A	0.81	4E-8		0.29	[0.19-0.39] unit increase	Affymetrix [19941912] (imputed)	N
1407	chr5	107753541	107753542	rs57268633	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	5q21.3		rs57268633-T	0.160227	4E-10		0.019097678	[0.013-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1407	chr5	107753690	107753691	rs11948261	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	5q21.3	FBXL17	rs11948261-A	0.210714	3E-10		6.3	z score increase	NR [10847151] (imputed)	N
1407	chr5	107757237	107757238	rs6895295	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Experiencing mood swings	373,733 European ancestry individuals	NA	5q21.3	FBXL17	rs6895295-T	0.223658	5E-8		5.46	z score increase	NR [10847151] (imputed)	N
1407	chr5	107779241	107779242	rs12187824	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	5q21.3	NR	rs12187824-A	NR	2E-8		5.579	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1407	chr5	107805853	107805854	rs2193976	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	5q21.3	NR	rs2193976-?	NR	2E-6		4.766	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1407	chr5	107834246	107834247	rs4571457	20848476	Haritunians T	2010-11-01	Inflamm Bowel Dis	Genetic predictors of medically refractory ulcerative colitis.	Ulcerative colitis	324 European ancestry medically refractory ulcerative colitis cases, 537 European ancestry non-medically refractory ulcerative colitis cases, 2,601 European ancestry controls	NA	5q21.3	intergenic	rs4571457-G	NR	7E-6	(Analysis II)			Illumina [313720]	N
1407	chr5	107850416	107850417	rs74651100	32469969	Pott J	2020-05-29	PLoS One	Genome-wide analysis of carotid plaque burden suggests a role of IL5 in men.	Sum of stenosis	727 European ancestry men, 550 European ancestry women	NA	5q21.3	NR	rs74651100-G	0.0574878	8E-6		0.360048	[0.2-0.52] % decrease	Affymetrix [532676] (imputed)	N
1407	chr5	107850416	107850417	rs74651100	32469969	Pott J	2020-05-29	PLoS One	Genome-wide analysis of carotid plaque burden suggests a role of IL5 in men.	Sum of carotid plaque area	727 European ancestry men, 550 European ancestry women	NA	5q21.3	NR	rs74651100-G	0.0574878	9E-7		0.369372	[0.22-0.52] mm2 decrease	Affymetrix [532676] (imputed)	N
1407	chr5	107850416	107850417	rs74651100	32469969	Pott J	2020-05-29	PLoS One	Genome-wide analysis of carotid plaque burden suggests a role of IL5 in men.	Carotid plaque maximum area	727 European ancestry men, 550 European ancestry women	NA	5q21.3	NR	rs74651100-G	0.0574878	3E-6		0.265517	[0.15-0.38] mm2 decrease	Affymetrix [532676] (imputed)	N
1407	chr5	107867809	107867810	rs10057652	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	5q21.3		rs10057652-?	NR	4E-10				NR [~ 8900000] (imputed)	N
1408	chr5	107878587	107878588	rs4075651	34054130	Bralten J	2021-05-30	Neuropsychopharmacology	Genetic underpinnings of sociability in the general population.	Worry too long after an embarrassing experience	342,461 European ancestry individuals	NA	5q21.3	RP11-120B7.1	rs4075651-?	NR	1E-7				Affymetrix [up to 9327396] (imputed)	N
1408	chr5	107878587	107878588	rs4075651	34054130	Bralten J	2021-05-30	Neuropsychopharmacology	Genetic underpinnings of sociability in the general population.	Sociability score	342,461 European ancestry individuals	NA	5q21.3	RP11-120B7.1	rs4075651-C	NR	9E-9		0.01391	unit decrease	Affymetrix [9327396] (imputed)	N
1408	chr5	107883190	107883191	rs6594319	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	5q21.3	FBXL17	rs6594319-A	0.433115	2E-8		5.63	z score decrease	NR [10847151] (imputed)	N
1408	chr5	107883892	107883893	rs6861691	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Irritable mood	366,726 European ancestry individuals	NA	5q21.3	FBXL17	rs6861691-C	0.43296	2E-8		5.65	z score decrease	NR [~ 10847151] (imputed)	N
1408	chr5	107898863	107898864	rs28693003	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5q21.3		rs28693003-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1408	chr5	107915735	107915736	rs10447248	21700879	Qi L	2011-06-23	Diabetes	Novel locus FER is associated with serum HMW adiponectin levels.	Adiponectin levels	1,591 European ancestry female individuals	626 European ancestry individuals from 235 families	5q21.3	FER	rs10447248-A	0.34	5E-8				Affymetrix [2543887] (imputed)	N
1408	chr5	107925764	107925765	rs9326734	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Lateral orbital frontal cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	5q21.3	NR	rs9326734-?		5E-6				Illumina [4322238] (imputed)	N
1408	chr5	107952833	107952834	rs77655815	32117412	Boua PR	2020-02-07	Front Genet	Novel and Known Gene-Smoking Interactions With cIMT Identified as Potential Drivers for Atherosclerosis Risk in West-African Populations of the AWI-Gen Study.	Carotid intima media thickness x smoking interaction	465 West African ancestry male smokers, 1,311 West African ancestry male non-smokers	NA	5q21.3	FBXL17, LINC01023	rs77655815-T	NR	1E-6		4.882	NR z score decrease	Illumina [7839440] (imputed)	N
1408	chr5	107974340	107974341	rs36066723	34757267	Teng MS	2021-10-15	Atherosclerosis	Genome-wide association study revealed novel candidate gene loci associated with soluble E-selectin levels in a Taiwanese population.	Soluble E-selectin levels (adjusted for ABO rs2519093 genotypes)	4,525 East Asian ancestry individuals	NA	5q21.3		rs36066723-?	NR	1E-7				Affymetrix [7338548] (imputed)	N
1408	chr5	107981746	107981747	rs12656502	24535457	Chouraki V	2014-02-18	Mol Psychiatry	A genome-wide association meta-analysis of plasma A? peptides concentrations in the elderly.	Plasma amyloid beta peptide concentrations (ABx-42)	3,528 European ancestry individuals	NA	5q21.3	intergenic	rs12656502-A	0.228	3E-6		0.08	[0.041-0.119] unit increase	Illumina [2316178] (imputed)	N
1409	chr5	108042192	108042193	rs10223256	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	5q21.3	LINC01023	rs10223256-C	NR	4E-13		0.0249079	[0.018-0.032] unit increase	Affymetrix [323123] (imputed)	N
1409	chr5	108046012	108046013	rs112020835	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Intraocular pressure	101,939 European ancestry cases	NA	5q21.3	NR	rs112020835-G		3E-8		0.16	[0.1-0.22] unit increase	NR [NR]	N
1409	chr5	108046699	108046700	rs73220177	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Intraocular pressure	133,492 European ancestry individuals	NA	5q21.3	FER	rs73220177-?	NR	8E-10		0.1511	[0.1-0.2] unit decrease	Affymetrix, Illumina [up to 40000000] (imputed)	N
1409	chr5	108046699	108046700	rs73220177	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	5q21.3	FER	rs73220177-G	0.926	2E-11		0.165	[0.12-0.21] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1409	chr5	108051736	108051737	rs58612872	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	5q21.3	NR	rs58612872-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
1409	chr5	108053611	108053612	rs73220188	29235454	Choquet H	2017-12-13	Nat Commun	A large multi-ethnic genome-wide association study identifies novel genetic loci for intraocular pressure.	Intraocular pressure	56,819 European ancestry individuals, 5,748 Hispanic/Latino individuals, 5,119 East Asian ancestry individuals, 2,070 African American individuals	37,930 European and Asian ancestry individuals	5q21.3	FBXL17, FER	rs73220188-?	NR	1E-13		0.15	[NR] unit increase	Affymetrix [at least 665000] (imputed)	N
1409	chr5	108053906	108053907	rs73220190	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Intraocular pressure	133,492 European ancestry individuals	NA	5q21.3	FER	rs73220190-T	0.93	4E-9				Affymetrix, Illumina [8002429] (imputed)	N
1409	chr5	108054727	108054728	rs17161463	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	5q21.3	LINC01023	rs17161463-T	NR	2E-9		0.0204056	[0.014-0.027] unit increase	Affymetrix [323123] (imputed)	N
1409	chr5	108073627	108073628	rs145744285	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q21.3	NR	rs145744285-C	0.0122	8E-17	(AGT)	0.09766	NR unit increase	Illumina [1671387] (imputed)	N
1409	chr5	108073627	108073628	rs145744285	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q21.3	NR	rs145744285-C	0.0122	2E-9	(IGHA2)	0.6265	NR unit increase	Illumina [1671387] (imputed)	N
1409	chr5	108073627	108073628	rs145744285	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q21.3	NR	rs145744285-C	0.0122	2E-8	(HAL)	0.1973	NR unit increase	Illumina [1671387] (imputed)	N
1409	chr5	108074228	108074229	rs77844865	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	5q21.3	LINC01023, FER	rs77844865-T	0.9158	1E-12		0.1725	[0.12-0.22] unit increase	Affymetrix [~ 11900000] (imputed)	N
1409	chr5	108086374	108086375	rs77606373	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	5q21.3	FER	rs77606373-A	0.9158	1E-11		0.1652	[0.12-0.21] unit increase	Affymetrix [~ 11900000] (imputed)	N
1409	chr5	108090133	108090134	rs112668446	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	5q21.3		rs112668446-A	NR	2E-28		0.0343	[0.028-0.04] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1409	chr5	108090133	108090134	rs112668446	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	5q21.3	FER	rs112668446-A	0.0779	3E-16		0.3785	[0.29-0.47] mmHg decrease	Affymetrix [NR] (imputed)	N
1409	chr5	108093528	108093529	rs10477931	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	5q21.3	FER	rs10477931-C	0.7287	1E-8		0.2124	[0.14-0.29] mmHg increase	Affymetrix [NR] (imputed)	N
1409	chr5	108099100	108099101	rs7700630	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5q21.3	FBXL17	rs7700630-?	NR	2E-6	(isocitrate)	0.17985427	[0.11-0.25] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1409	chr5	108102726	108102727	rs62361303	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	5q21.3	FER	rs62361303-C		6E-7		0.262	unit increase	Affymetrix [at least 2696785] (imputed)	N
1409	chr5	108102726	108102727	rs62361303	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	5q21.3	FER	rs62361303-C		2E-11		0.235	unit increase	Affymetrix [at least 2696785] (imputed)	N
1409	chr5	108108021	108108021	rs111439913	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	5q21.3		rs111439913-GTA	NR	1E-8		0.0212	[0.014-0.028] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1409	chr5	108108021	108108021	rs111439913	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	5q21.3		rs111439913-GTA	NR	2E-13		0.0258	[0.019-0.033] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
1409	chr5	108112358	108112359	rs62361338	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	5q21.3		rs62361338-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1409	chr5	108113343	108113344	rs13177718	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	5q21.3	FER	rs13177718-T	0.075	3E-13		0.043	[0.031-0.055] unit decrease	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
1409	chr5	108113343	108113344	rs13177718	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	5q21.3	FER	rs13177718-T	0.07	3E-8		0.04	[NR] unit decrease	Affymetrix, Illumina [2834208] (imputed)	N
1409	chr5	108113739	108113740	rs79409628	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	5q21.3	FER	rs79409628-T	NR	2E-10		0.035354	[0.025-0.046] unit increase	Affymetrix [323123] (imputed)	N
1409	chr5	108133864	108133865	rs141543178	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	5q21.3	FER	rs141543178-T	NR	3E-9		0.0539342	[0.036-0.072] unit decrease	Affymetrix [321114] (imputed)	N
1410	chr5	108139016	108139017	rs113869436	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	5q21.3	FER	rs113869436-C	NR	2E-8		0.0500346	[0.032-0.068] unit increase	Affymetrix [323123] (imputed)	N
1410	chr5	108148120	108148121	rs57561676	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	5q21.3	FER	rs57561676-A	NR	1E-8		0.0190612	[0.012-0.026] unit increase	Affymetrix [321114] (imputed)	N
1410	chr5	108148120	108148121	rs57561676	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	5q21.3	FER	rs57561676-A	NR	3E-8		0.0185902	[0.012-0.025] unit increase	Affymetrix [321016] (imputed)	N
1410	chr5	108148120	108148121	rs57561676	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	5q21.3	FER	rs57561676-A	NR	1E-11		0.0245395	[0.017-0.032] unit increase	Affymetrix [323123] (imputed)	N
1410	chr5	108148120	108148121	rs57561676	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	5q21.3	NR	rs57561676-?	NR	7E-15				Affymetrix [~ 8270000] (imputed)	N
1410	chr5	108148120	108148121	rs57561676	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5q21.3		rs57561676-?	NR	8E-43				NR [~ 8900000] (imputed)	N
1410	chr5	108152427	108152428	rs10041657	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in smokers	19,276 European ancestry women, 16,408 European ancestry men, 973 European ancestry individuals, 1,701 African American/Afro-Caribbean ancestry women, 903 African American/Afro-Caribbean ancestry men, 10 Indian Asian ancestry women, 957 Indian Asian ancestry men, 267 Filipino ancestry women, 475 Hispanic/Latino ancestry women, 446 Hispanic/Latino ancestry men	5,485 European ancestry women, 6,471 European ancestry men, 13,416 European ancestry individuals, 253 African American/Afro-Caribbean ancestry women, 208 African American/Afro-Caribbean ancestry men	5q21.3	FER	rs10041657-A	0.2268	2E-6		0.0414	[0.025-0.058] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1410	chr5	108152427	108152428	rs10041657	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	5q21.3	FER	rs10041657-A	0.2268	3E-6	(men)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1410	chr5	108152427	108152428	rs10041657	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	5q21.3	FER	rs10041657-A	0.2268	1E-8				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1410	chr5	108152427	108152428	rs10041657	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	5q21.3	FER	rs10041657-A	0.2268	2E-7		0.021	[0.013-0.029] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1410	chr5	108152427	108152428	rs10041657	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	5q21.3	FER	rs10041657-A	0.2215	4E-7	(EA,women)	0.0264	[0.016-0.037] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1410	chr5	108152427	108152428	rs10041657	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	5q21.3	FER	rs10041657-A	0.2215	3E-10	(EA)	0.0251	[0.017-0.033] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1410	chr5	108167602	108167603	rs114064810	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	5q21.3	FER	rs114064810-A	0.025416	1E-9		0.043851264	[0.03-0.058] unit increase	Affymetrix [93095623] (imputed)	N
1410	chr5	108167602	108167603	rs114064810	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	5q21.3	NR	rs114064810-?	NR	2E-13				Affymetrix [~ 8270000] (imputed)	N
1410	chr5	108210303	108210304	rs6889995	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	5q21.3	FER	rs6889995-G	0.2205	4E-8		0.4443	[0.29-0.6] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1410	chr5	108248884	108248885	rs9326754	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	5q21.3		rs9326754-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1411	chr5	108288902	108288903	rs78392994	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	5q21.3	NR	rs78392994-T	NR	5E-6		1.09	[NR]	Illumina [7158791] (imputed)	N
1412	chr5	108402139	108402140	rs4957796	25533491	Rautanen A	2014-12-18	Lancet Respir Med	Genome-wide association study of survival from sepsis due to pneumonia: an observational cohort study.	Sepsis from pneumonia (survival)	359 European ancestry non-survivor cases, 1,194 European ancestry survivor cases	106 European ancestry non-survivor cases, 432 European ancestry survivor cases	5q21.3	FER	rs4957796-?	NR	6E-8		1.79	[1.45-2.22]	Affymetrix, Illumina [5888277] (imputed)	N
1412	chr5	108444553	108444554	rs4957798	27611488	Almoguera B	2016-09-09	Am J Respir Crit Care Med	Identification of Four Novel Loci in Asthma in European American and African American Populations.	Asthma (childhood onset)	1,181 African American allergic asthma child cases, 498 African American non-allergic asthma child cases, 2,993 African American child controls, 998 European American allergic asthma child cases, 182 European American non-allergic asthma child cases, 4,097 European American child controls.	NA	5q21.3	FER	rs4957798-?	NR	7E-6	(AA)			Affymetrix, Illumina [NR] (imputed)	N
1412	chr5	108444553	108444554	rs4957798	27611488	Almoguera B	2016-09-09	Am J Respir Crit Care Med	Identification of Four Novel Loci in Asthma in European American and African American Populations.	Asthma (childhood onset)	1,181 African American allergic asthma child cases, 498 African American non-allergic asthma child cases, 2,993 African American child controls, 998 European American allergic asthma child cases, 182 European American non-allergic asthma child cases, 4,097 European American child controls.	NA	5q21.3	FER	rs4957798-?	NR	3E-6		0.163	[0.094-0.232] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1412	chr5	108444553	108444554	rs4957798	27611488	Almoguera B	2016-09-09	Am J Respir Crit Care Med	Identification of Four Novel Loci in Asthma in European American and African American Populations.	Asthma	819 African American non-allergic asthma cases, 2,218 African American allergic asthma cases 4,360 African American controls, 808 European American non-allergic asthma cases, 1,464 European American allergic asthma cases, 11,975 European American controls	NA	5q21.3	FER	rs4957798-?		1E-6		0.139	[0.084-0.194] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1412	chr5	108447347	108447348	rs10070411	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder	29,475 European ancestry cases, 63,482 European ancestry controls	NA	5q21.3	NR	rs10070411-A	0.778321	7E-7		1.0787487	[1.05-1.11]	Affymetrix [7791636] (imputed)	N
1412	chr5	108451213	108451214	rs17534846	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder in trauma-unexposed individuals	9,487 European ancestry cases, 39,677 European ancestry controls	NA	5q21.3	NR	rs17534846-A	0.655753	8E-6		1.1389521	[1.08-1.2]	Affymetrix [7791636] (imputed)	N
1413	chr5	108541222	108541223	rs6594357	25461247	Lehmann DS	2015-02-01	Pharmacogenet Genomics	Genome-wide association study of virologic response with efavirenz-containing or abacavir-containing regimens in AIDS clinical trials group protocols.	Response to abacavir-containing treatment in HIV-1 infection (virologic failure)	Up 346 European ancestry individuals, Up to 265 Black individuals, Up to 175 Hispanic individuals	NA	5q21.3	NR	rs6594357-T	NR	8E-7	(phenotype 2)	3.33	[NR]	Illumina [> 8000000] (imputed)	N
1413	chr5	108587145	108587146	rs72793038	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Pallidum volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	5q21.3	LOC285638	rs72793038-?		8E-6				Illumina [4322238] (imputed)	N
1413	chr5	108642571	108642572	rs10077083	24869959	Jacobs LC	2014-08-01	JAMA Dermatol	Intrinsic and extrinsic risk factors for sagging eyelids.	Upper eyelid sagging severity	6,631 European ancestry individuals	NA	5q21.3	Intergenic	rs10077083-C	0.03	6E-7	(additive)	0.23	[NR] unit increase	Illumina [at least 2149245] (imputed)	N
1413	chr5	108656634	108656635	rs1862205	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	5q21.3	PJA2	rs1862205-G	0.595274	7E-9		0.0112811	[0.0075-0.0151] unit decrease	Affymetrix [NR] (imputed)	N
1413	chr5	108656634	108656635	rs1862205	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	5q21.3	PJA2	rs1862205-G	0.595355	4E-8		0.0110277	[0.0071-0.015] unit decrease	Affymetrix [NR] (imputed)	N
1414	chr5	108679146	108679147	rs437112	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	5q21.3	PJA2	rs437112-A	0.406913	3E-15		0.0148118	[0.011-0.018] unit decrease	NR [13737936] (imputed)	N
1414	chr5	108679146	108679147	rs437112	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	5q21.3		rs437112-?	NR	4E-15				NR [~ 8900000] (imputed)	N
1414	chr5	108714297	108714298	rs1045706	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	5q21.3		rs1045706-?	NR	2E-12		0.0148538	[0.011-0.019] unit decrease	Affymetrix [20259828] (imputed)	N
1414	chr5	108714297	108714298	rs1045706	29273807	Turcot V	2017-12-22	Nat Genet	Protein-altering variants associated with body mass index implicate pathways that control energy intake and expenditure in obesity.	Body mass index	up to 449,889 European ancestry individuals, up to 29,398 South Asian ancestry individuals, up to 27,610 African American individuals, up to 8,839 East Asian individuals, up to 10,772 Hispanic ancestry individuals	up to 196,766 European ancestry individuals	5q21.3	PJA2	rs1045706-C	0.5657	2E-10		0.0114	[0.0079-0.0149] unit increase	Illumina [246328]	N
1414	chr5	108746636	108746637	rs13435934	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	5q21.3	NR	rs13435934-A	NR	5E-6	(GEE model)	0.65998	[0.38-0.94] unit decrease	NR [NR] (imputed)	N
1415	chr5	108807759	108807760	rs11741087	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	5q21.3	NR	rs11741087-?	NR	4E-6		0.0080344	[0.0046-0.0115] unit increase	Affymetrix [805426] (imputed)	N
1415	chr5	108814210	108814211	rs114536492	34074324	Wan JY	2021-06-01	Diabetol Metab Syndr	Genome-wide association analysis of metabolic syndrome quantitative traits in the GENNID multiethnic family study.	Triglyceride levels	281 African American individuals from 73 families, 516 European ancestry individuals from 75 families, 125 Japanese American individuals from 15 families, 598 Mexican American individuals from 96 families	NA	5q21.3	PJA2, MAN2A1	rs114536492-T	0.02	6E-8	(African American)	1.0	[0.65-1.35] unit increase	Illumina [up to 13042663] (imputed)	N
1415	chr5	108855305	108855306	rs79095029	29724592	Pottier C	2018-04-30	Lancet Neurol	Potential genetic modifiers of disease risk and age at onset in patients with frontotemporal lobar degeneration and GRN mutations: a genome-wide association study.	Frontotemporal dementia with GRN mutation	382 European ancestry cases, 1,146 European ancestry controls	67 European ancestry cases, 1,798 European ancestry controls	5q21.3	PJA2	rs79095029-C	0.92	4E-6		2.564103	[1.69-3.7]	Illumina [7033776] (imputed)	N
1416	chr5	108929596	108929597	rs9326778	27021288	Brevik EJ	2016-03-29	Am J Med Genet B Neuropsychiatr Genet	Genome-wide analyses of aggressiveness in attention-deficit hyperactivity disorder.	Aggressiveness in attention deficit hyperactivity disorder	1,060 European ancestry adult cases	NA	5q21.3	KRT18P42	rs9326778-T		8E-6		3.6559	[2.05-5.26] unit increase	Illumina [7576458] (imputed)	N
1416	chr5	108933480	108933481	rs76037120	27021288	Brevik EJ	2016-03-29	Am J Med Genet B Neuropsychiatr Genet	Genome-wide analyses of aggressiveness in attention-deficit hyperactivity disorder.	Aggressiveness in attention deficit hyperactivity disorder	1,060 European ancestry adult cases	NA	5q21.3	KRT18P42	rs76037120-C		3E-6		3.224	[1.87-4.57] unit increase	Illumina [7576458] (imputed)	N
1416	chr5	108942995	108942996	rs1074462	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	5q21.3	Intergenic	rs1074462-A	0.3905	1E-8	(MTAG)	0.0096	[0.0063-0.0129] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1416	chr5	108943484	108943485	rs2416214	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	5q21.3		rs2416214-A	0.4367	2E-8		0.0079	[0.0052-0.0106] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1416	chr5	108943484	108943485	rs2416214	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	5q21.3	Intergenic	rs2416214-A	0.4367	2E-9	(MTAG)	0.0079	[0.0054-0.0104] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1416	chr5	108970517	108970518	rs146746145	34074324	Wan JY	2021-06-01	Diabetol Metab Syndr	Genome-wide association analysis of metabolic syndrome quantitative traits in the GENNID multiethnic family study.	Triglyceride levels	281 African American individuals from 73 families, 516 European ancestry individuals from 75 families, 125 Japanese American individuals from 15 families, 598 Mexican American individuals from 96 families	NA	5q21.3	PJA2, MAN2A1	rs146746145-G	0.02	3E-7	(African American)	1.13	[0.7-1.56] unit increase	Illumina [up to 13042663] (imputed)	N
1416	chr5	108996642	108996643	rs31612	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	417,580 European ancestry individuals	NA	5q21.3		rs31612-T	0.825562	10E-8		0.014	[0.0081-0.0199] unit decrease	NR [7250403] (imputed)	N
1416	chr5	108996642	108996643	rs31612	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	5q21.3	MAN2A1	rs31612-T	0.8221	3E-8		0.017080551	[0.011-0.023] unit decrease	Affymetrix [11515109] (imputed)	N
1416	chr5	109012309	109012310	rs419677	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	5q21.3	NR	rs419677-?	NR	5E-9		1.0548522	[1.04-1.07]	Affymetrix, Illumina [12447948] (imputed)	N
1416	chr5	109014509	109014510	rs427691	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	5q21.3	LOC100289673, MAN2A1	rs427691-A		3E-8		1.06	[1.04-1.09]	Affymetrix, Illumina [NR]	N
1416	chr5	109016625	109016626	rs17450784	26242244	Ma Y	2015-08-05	Sci Rep	Association of chromosome 5q21.3 polymorphisms with the exploratory eye movement dysfunction in schizophrenia.	Exploratory eye movement dysfunction in schizophrenia (responsive search score)	128 Han Chinese ancestry cases	NA	5q21.3	MAN2A1	rs17450784-?	NR	3E-6		5.089	[3.04-7.14] unit decrease	Illumina [498648]	N
1416	chr5	109016625	109016626	rs17450784	26242244	Ma Y	2015-08-05	Sci Rep	Association of chromosome 5q21.3 polymorphisms with the exploratory eye movement dysfunction in schizophrenia.	Exploratory eye movement dysfunction in schizophrenia (number of eye fixations)	128 Han Chinese ancestry cases	NA	5q21.3	MAN2A1	rs17450784-?	NR	5E-7		15.17	[9.55-20.79] unit decrease	Illumina [498648]	N
1416	chr5	109036065	109036066	rs4388249	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	5q21.3	MAN2A1	rs4388249-T	NR	2E-8		1.065	[1.04-1.09]	Illumina [6627481] (imputed)	N
1416	chr5	109036065	109036066	rs4388249	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	5q21.3	MAN2A1	rs4388249-T	NR	2E-6	(EA)	1.0692	[1.04-1.1]	Illumina [6627481] (imputed)	N
1416	chr5	109036065	109036066	rs4388249	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	5q21.3	MAN2A1	rs4388249-T	NR	8E-9		1.066	[1.04-1.09]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1416	chr5	109036065	109036066	rs4388249	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	5q21.3	NR	rs4388249-T	NR	2E-7		1.07	[NR]	Illumina [7158791] (imputed)	N
1416	chr5	109036065	109036066	rs4388249	25056061	Ripke S	2014-07-22	Nature	Biological insights from 108 schizophrenia-associated genetic loci.	Schizophrenia	32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	1,513 European ancestry cases, 66,236 European ancestry controls	5q21.3	MAN2A1	rs4388249-T	0.213	3E-8		1.076	[1.048-1.104]	Affymetrix, Illumina [9005918] (imputed)	N
1416	chr5	109038628	109038629	rs2300993	30487263	Pollack S	2018-11-28	Diabetes	Multiethnic Genome-wide Association Study of Diabetic Retinopathy using Liability Threshold Modeling of Duration of Diabetes and Glycemic Control.	Diabetic retinopathy (all NPDR and PDR)	1,079 European ancestry cases, 1,970 European ancestry controls, 911 African American cases, 941 African American controls	7,178 East Asian ancestry cases, 6,525 East Asian ancestry controls, 214 South East Asian ancestry cases, 557 South East Asian ancestry controls, 315 South Asian ancestry cases, 669 South Asian ancestry controls, 8,205 European ancestry cases, 7,713 European ancestry controls, 1,470 Hispanic cases, 1,240 Hispanic controls	5q21.3	NR	rs2300993-?	NR	5E-7	(AA, adjusted for duration of diabetes and glycemic control)	1.83	[NR]	Affymetrix, Illumina [NR] (imputed)	N
1416	chr5	109044066	109044067	rs6877440	26242244	Ma Y	2015-08-05	Sci Rep	Association of chromosome 5q21.3 polymorphisms with the exploratory eye movement dysfunction in schizophrenia.	Exploratory eye movement dysfunction in schizophrenia (cognitive search score)	128 Han Chinese ancestry cases	NA	5q21.3	MAN2A1	rs6877440-?	NR	7E-8		3.63	[2.39-4.87] unit decrease	Illumina [498648]	N
1416	chr5	109046209	109046210	rs71575306	31268507	Periyasamy S	2019-07-03	JAMA Psychiatry	Association of Schizophrenia Risk With Disordered Niacin Metabolism in an Indian Genome-wide Association Study.	Schizophrenia	816 Indian ancestry cases, 900 Indian ancestry controls, 505 Indian ancestry cases and 871 Indian ancestry controls from 405 families, up to 36,989 European and unknown ancestry cases, up to 113,075 European and unknown ancestry controls	NA	5q21.3	NR	rs71575306-?	NR	1E-7				Illumina [up to 5582932] (imputed)	N
1416	chr5	109046209	109046210	rs71575306	29483656	Pardinas AF	2018-02-26	Nat Genet	Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.	Schizophrenia	40,675 European ancestry cases, 64,643 European ancestry controls	1,651 European ancestry cases, 4,111 cases, 142,717 European ancestry controls, 11,507 controls	5q21.3	MAN2A1	rs71575306-?	NR	6E-7				Illumina [8000000] (imputed)	N
1417	chr5	109058593	109058594	rs1438660	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	5q21.3	NR	rs1438660-A	NR	4E-8		5.513	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1417	chr5	109078039	109078040	rs12656571	30487263	Pollack S	2018-11-28	Diabetes	Multiethnic Genome-wide Association Study of Diabetic Retinopathy using Liability Threshold Modeling of Duration of Diabetes and Glycemic Control.	Diabetic retinopathy (moderate NPDR and PDR)	644 European ancestry cases, 1,970 European ancestry controls, 768 African American cases, 941 African American controls	2,388 East Asian ancestry cases, 6,219 East Asian ancestry controls, 1,658 European ancestry cases, 3,019 European ancestry controls, 1,014 Hispanic cases, 1,240 Hispanic controls	5q21.3	NR	rs12656571-?	NR	8E-7	(AA, adjusted for duration of diabetes and glycemic control)	1.89	[NR]	Affymetrix, Illumina [NR] (imputed)	N
1417	chr5	109095544	109095545	rs13187428	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	5q21.3		rs13187428-T	0.6664	8E-16	(conditional-joint)	0.012	[0.0091-0.0149] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1417	chr5	109132459	109132460	rs185872031	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	5q21.3	MAN2A1	rs185872031-G	0.0110550396323121	6E-6	(G_Ruminococcus_HB)	1.52735	[0.86-2.19] unit decrease	Illumina [7711310] (imputed)	N
1417	chr5	109154383	109154384	rs6881643	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	5q21.3	Intergenic	rs6881643-A	0.6609	5E-12	(MTAG)	0.0167	[0.012-0.021] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1417	chr5	109156183	109156184	rs17489649	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	5q21.3		rs17489649-A	0.6788	3E-17		0.0127	[0.0098-0.0156] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1417	chr5	109156183	109156184	rs17489649	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	5q21.3	Intergenic	rs17489649-A	0.6788	5E-20	(MTAG)	0.0129	[0.01-0.016] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1417	chr5	109156183	109156184	rs17489649	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	5q21.3	MAN2A1	rs17489649-A	NR	2E-9		0.01859901	[0.013-0.025] unit increase	Affymetrix [NR]	N
1417	chr5	109163345	109163346	rs3797678	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	5q21.3	NR	rs3797678-C	0.347	2E-8		0.00639454	[0.0042-0.0086] unit increase	NR [9732723] (imputed)	N
1417	chr5	109178758	109178759	rs11241040	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	5q21.3		rs11241040-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1417	chr5	109180020	109180021	rs13355543	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hypothyroidism	30,155 European ancestry cases, 379,986 European ancestry controls, 1,114 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	5q21.3		rs13355543-G	NR	2E-8		0.0586	[0.038-0.079] unit increase	Affymetrix, Illumina [25801083] (imputed)	N
1417	chr5	109180020	109180021	rs13355543	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	5q21.3	Intergenic	rs13355543-A	0.6544	7E-14	(MTAG)	0.013	[0.0097-0.0163] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1418	chr5	109207831	109207832	rs10069890	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	5q21.3	NR	rs10069890-?	NR	5E-6		4.578	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1418	chr5	109221025	109221026	rs112724034	23535033	Sherva R	2013-03-24	Alzheimers Dement	Genome-wide association study of the rate of cognitive decline in Alzheimer's disease.	Alzheimer's disease (cognitive decline)	303 European ancestry cases		5q21.3	PGAM5P1, MAN2A1	rs112724034-?	0.03	9E-13		0.31	unit decrease	Illumina [NR] (imputed)	N
1418	chr5	109226416	109226417	rs6861117	31168069	Ward J	2019-06-05	Mol Psychiatry	The genomic basis of mood instability: identification of 46 loci in 363,705 UK Biobank participants, genetic correlation with psychiatric disorders, and association with gene expression and function.	Mood instability	157,039 European ancestry cases, 206,666 European ancestry controls	NA	5q21.3	intergenic	rs6861117-?	NR	2E-8		0.0122465	[0.008-0.0165] unit increase	Affymetrix [NR] (imputed)	N
1419	chr5	109417146	109417147	rs112103074	34047840	Vicuna L	2021-05-28	Hum Genet	Novel loci and mapuche genetic ancestry are associated with pubertal growth traits in Chilean boys.	Peak height velocity	440 Chilean boys, 464 Chilean girls	NA	5q21.3	AC011366.3	rs112103074-?	NR	8E-7	(boys)	1.21	[NR] unit decrease	Illumina [774433] (imputed)	N
1420	chr5	109496959	109496960	rs4460176	17903294	Yang Q	2007-09-19	BMC Med Genet	Genome-wide association and linkage analyses of hemostatic factors and hematological phenotypes in the Framingham Heart Study.	Hemostatic factors and hematological phenotypes	Up to 1,062 European ancestry individuals	NA	5q21.3	intergenic	rs4460176-?	0.29	3E-6	(PAI-1)			Affymetrix [70897]	N
1421	chr5	109636584	109636585	rs12518142	28394258	Wild PS	2017-04-10	J Clin Invest	Large-scale genome-wide analysis identifies genetic variants associated with cardiac structure and function.	Left ventricle wall thickness	30,201 European ancestry individuals	NA	5q22.1	NR	rs12518142-T	0.0469	3E-6		0.03	[0.017-0.043] unit increase	Affymetrix, Illumina [at least 283291] (imputed)	N
1422	chr5	109748558	109748559	rs11743286	29378355	Stanne TM	2018-02-01	Thromb Haemost	A Genome-wide Study of Common and Rare Genetic Variants Associated with Circulating Thrombin Activatable Fibrinolysis Inhibitor.	Thrombin-activatable fibrinolysis inhibitor levels	3,116 European ancestry individuals	NA	5q22.1	TMEM232, SLC25A46	rs11743286-T	0.022	3E-7		0.15	[0.091-0.209] unit decrease	Illumina [10000000] (imputed)	N
1423	chr5	109917241	109917242	rs185398268	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	5q22.1		rs185398268-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1424	chr5	109996466	109996467	rs6886061	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	5q22.1	NR	rs6886061-?	NR	1E-13				Affymetrix [~ 8270000] (imputed)	N
1424	chr5	110004748	110004749	rs7730817	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	5q22.1	NR	rs7730817-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
1424	chr5	110008213	110008214	rs17132261	28394258	Wild PS	2017-04-10	J Clin Invest	Large-scale genome-wide analysis identifies genetic variants associated with cardiac structure and function.	Left ventricle wall thickness	30,201 European ancestry individuals	NA	5q22.1	NR	rs17132261-T	0.0166	8E-6		0.0354	[0.02-0.051] unit increase	Affymetrix, Illumina [at least 283291] (imputed)	N
1424	chr5	110008213	110008214	rs17132261	19584346	Vasan RS	2009-07-08	JAMA	Genetic variants associated with cardiac structure and function: a meta-analysis and replication of genome-wide association data.	Cardiac structure and function	12,612 European ancestry individuals	4,094 European ancestry individuals	5q22.1	SLC25A46	rs17132261-T	0.02	9E-7	(LV wall thickness)	0.06	[0.04-0.08] cm increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1424	chr5	110052043	110052044	rs67692128	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	5q22.1		rs67692128-?	NR	1E-16				NR [~ 8900000] (imputed)	N
1424	chr5	110089907	110089908	rs17506409	30196971	Bray MJ	2018-09-01	Fertil Steril	Transethnic and race-stratified genome-wide association study of fibroid characteristics in African American and European American women.	Uterine fibroid size (maximum volume)	1,048 African American or European ancestry female individuals	NA	5q22.1	SLC25A46	rs17506409-G	0.08	8E-7	(EA)	0.46	[0.28-0.64] unit increase	Affymetrix [up to 9597202] (imputed)	N
1425	chr5	110142815	110142816	rs7705653	29785011	Zhu Z	2018-05-21	Nat Genet	A genome-wide cross-trait analysis from UK Biobank highlights the shared genetic architecture of asthma and allergic diseases.	Asthma or allergic disease (pleiotropy)	14,085 European asthma cases, 25,685 European ancestry allergic diseases cases, 76,768 European ancestry controls	NA	5q22.1	SLC25A46, TMEM232	rs7705653-?	NR	1E-19		1.14		NR [74888535] (imputed)	N
1425	chr5	110142815	110142816	rs7705653	29785011	Zhu Z	2018-05-21	Nat Genet	A genome-wide cross-trait analysis from UK Biobank highlights the shared genetic architecture of asthma and allergic diseases.	Allergic disease (asthma, hay fever or eczema)	25,685 European ancestry allergic diseases cases, 76,768 European ancestry controls	NA	5q22.1	SLC25A46, TMEM232	rs7705653-?	NR	2E-20		1.14	[1.11-1.17]	Affymetrix [74888535] (imputed)	N
1425	chr5	110145677	110145678	rs140992608	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (processing speed) x major depressive disorder interaction (2df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	5q22.1		rs140992608-A	0.02	1E-8				NR [NR] (imputed)	N
1425	chr5	110146445	110146446	rs17513503	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	5q22.1	NR	rs17513503-?	NR	3E-20				Affymetrix [~ 8270000] (imputed)	N
1425	chr5	110146445	110146446	rs17513503	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	5q22.1	SLC25A46, TMEM232	rs17513503-G	0.073899	4E-17		1.1044594	[1.08-1.13]	Affymetrix [8274727] (imputed)	N
1425	chr5	110146445	110146446	rs17513503	22036096	Ramasamy A	2011-11-01	J Allergy Clin Immunol	A genome-wide meta-analysis of genetic variants associated with allergic rhinitis and grass sensitization and their interaction with birth order.	IgE grass sensitization	2,315 European ancestry cases, 10,032 European ancestry controls	NA	5q22.1	TMEM232, SLCA25A46	rs17513503-G	0.09	1E-8		1.39	[1.24-1.56]	Affymetrix, Illumina [2217510] (imputed)	N
1425	chr5	110146445	110146446	rs17513503	22036096	Ramasamy A	2011-11-01	J Allergy Clin Immunol	A genome-wide meta-analysis of genetic variants associated with allergic rhinitis and grass sensitization and their interaction with birth order.	Allergic rhinitis	3,933 European ancestry cases, 8,965 European ancestry controls	NA	5q22.1	TMEM232, SLCA25A46	rs17513503-G	0.09	7E-7		1.28	[1.16-1.41]	Affymetrix, Illumina [2217510] (imputed)	N
1425	chr5	110148470	110148471	rs7728912	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	5q22.1	NR	rs7728912-C	0.1461	5E-52		1.134	[1.116-1.152]	Affymetrix [15688218] (imputed)	N
1425	chr5	110148470	110148471	rs7728912	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic rhinitis	18,915 European ancestry cases, 239,773 European ancestry controls	NA	5q22.1	WDR36	rs7728912-C	0.1473	5E-26		1.175	[1.141-1.209]	Affymetrix [15688218] (imputed)	N
1425	chr5	110153340	110153341	rs7735519	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (adrenergics, inhalants)	28,880 European ancestry cases, 147,565 European ancestry controls	NA	5q22.1	SLC25A46	rs7735519-A	0.147692	2E-8		0.071970046	[0.047-0.097] unit increase	Affymetrix [7288503] (imputed)	N
1425	chr5	110154308	110154309	rs3853750	34785669	Grosche S	2021-11-16	Nat Commun	Rare variant analysis in eczema identifies exonic variants in DUSP1, NOTCH4 and SLC9A4.	Eczema	20,016 European ancestry cases, 380,433 European ancestry controls	NA	5q22.1		rs3853750-C	0.1688	8E-11		1.1		Affymetrix, Illumina [9397031] (imputed)	N
1425	chr5	110154308	110154309	rs3853750	31959851	Olafsdottir TA	2020-01-20	Nat Commun	Eighty-eight variants highlight the role of T cell regulation and airway remodeling in asthma pathogenesis.	Asthma	16,247 European ancestry cases, 346,486 European ancestry controls, 52,942 cases, 355,713 controls	NA	5q22.1	SLC25A46, TMEM232, TSLP, WDR36, MIR548F3, CAMK4	rs3853750-C	0.14771	2E-18		1.0805	[1.06-1.10]	Affymetrix [32463443] (imputed)	N
1425	chr5	110154308	110154309	rs3853750	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	5q22.1		rs3853750-?	NR	5E-62				NR [~ 8900000] (imputed)	N
1425	chr5	110154308	110154309	rs3853750	24388013	Ferreira MA	2013-12-30	J Allergy Clin Immunol	Genome-wide association analysis identifies 11 risk variants associated with the asthma with hay fever phenotype.	Asthma and hay fever	6,685 European ancestry cases, 14,091 European ancestry controls	878 European ancestry cases, 2,455 European ancestry controls	5q22.1	SLC25A46	rs3853750-C		2E-7		1.1533	[1.1-1.21]	Illumina [up to 4972397] (imputed)	N
1425	chr5	110158479	110158480	rs10055042	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (antihistamines for systemic use)	13,984 European ancestry cases, 137,652 European ancestry controls	NA	5q22.1	SLC25A46	rs10055042-A	0.155523	2E-8		0.09818808	[0.064-0.132] unit increase	Affymetrix [7288503] (imputed)	N
1425	chr5	110158843	110158844	rs7734635	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	5q22.1	SLC25A46, TSLP	rs7734635-?	NR	2E-30		1.116	[1.1-1.13]	Affymetrix [9000000] (imputed)	N
1425	chr5	110158843	110158844	rs7734635	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	5q22.1	SLC25A46, TSLP	rs7734635-G	NR	2E-29		1.111	[1.09-1.13]	Affymetrix [9000000] (imputed)	N
1425	chr5	110158843	110158844	rs7734635	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Respiratory diseases	approximately 459,000 European ancestry individuals	NA	5q22.1		rs7734635-?	NR	1E-15				NR [~ 8900000] (imputed)	N
1425	chr5	110159878	110159879	rs1814576	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	5q22.1	SLC25A46, TSLP	rs1814576-C	0.09	1E-22		1.121	[1.1-1.14]	Affymetrix, Illumina [8307659] (imputed)	N
1425	chr5	110161473	110161473	rs540485182	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (adult onset)	26,582 European ancestry cases, 300,671 European ancestry controls	16,297 European ancestry cases, 217,711 European ancestry controls	5q22.1	SLC25A46, TSLP	rs540485182-?	NR	4E-15		1.078	[1.06-1.1]	Affymetrix [9000000] (imputed)	N
1425	chr5	110161473	110161473	rs540485182	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	5q22.1	SLC25A46, TSLP	rs540485182-CA	NR	2E-29		1.112	[1.09-1.13]	Affymetrix [9000000] (imputed)	N
1425	chr5	110162261	110162262	rs4099209	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	5q22.1	NR	rs4099209-?	NR	9E-26	(conditional)			Affymetrix [15688218] (imputed)	N
1425	chr5	110163205	110163206	rs10073425	34116867	Tanaka N	2021-06-02	J Allergy Clin Immunol	Eight novel susceptibility loci and putative causal variants in atopic dermatitis.	Atopic dermatitis	2,597 Japanese ancestry cases, 110,504 Japanese ancestry controls, 25,685 European ancestry cases, 76,768 European ancestry controls	NA	5q22.1		rs10073425-?	NR	9E-24		1.14	[1.1-1.16]	Illumina [5170515] (imputed)	N
1425	chr5	110164673	110164674	rs7728612	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (multivariate analysis)	477,968 European ancestry individuals	NA	5q22.1	SLC25A46, TSLP	rs7728612-T	0.167	2E-15		0.045	[0.033-0.057] unit decrease	NR [NR] (imputed)	N
1425	chr5	110164673	110164674	rs7728612	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (age of onset)	117,130 European ancestry individuals	NA	5q22.1	SLC25A46, TSLP	rs7728612-T	0.167	1E-15		0.045	[0.033-0.057] unit decrease	NR [7647814] (imputed)	N
1425	chr5	110166082	110166083	rs6869502	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	5q22.1	SLC25A46, TSLP	rs6869502-T	0.18	6E-29		1.079	[1.07-1.09]	Affymetrix, Illumina [8307659] (imputed)	N
1425	chr5	110176127	110176128	rs9885413	27149122	Smith JG	2016-05-05	PLoS Genet	Discovery of Genetic Variation on Chromosome 5q22 Associated with Mortality in Heart Failure.	Mortality in heart failure	1798 European ancestry cases, 1030 European ancestry controls	889 European ancestry cases, 981 European ancestry controls	5q22.1	Intergenic	rs9885413-T	0.07	3E-9		1.36	[1.23-1.51]	Affymetrix, Illumina [2500000] (imputed)	N
1425	chr5	110187053	110187054	rs12657787	30013184	Waage J	2018-07-16	Nat Genet	Genome-wide association and HLA fine-mapping studies identify risk loci and genetic pathways underlying allergic rhinitis.	Allergic sensitization	8,040 European ancestry cases, 16,441 European ancestry controls	NA	5q22.1	SLC25A38P1, TMEM232	rs12657787-A	0.16	7E-11		1.21	[1.14-1.28]	Affymetrix, Illumina [16531985] (imputed)	N
1425	chr5	110190051	110190052	rs10056340	23817571	Bonnelykke K	2013-06-30	Nat Genet	Meta-analysis of genome-wide association studies identifies ten loci influencing allergic sensitization.	Allergic sensitization	5,789 European ancestry cases, 10,056 European ancestry controls	6,114 European ancestry cases, 9,920 European ancestry controls	5q22.1	TSLP, SLC25A46, WDR36, CAMK4	rs10056340-G	0.17	5E-14		1.2	[1.15-1.28]	Affymetrix, Illumina [~ 2500000] (imputed)	N
1425	chr5	110198113	110198114	rs6893213	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota relative abundance (bacterial taxa)	up to 858 Metropolitan French ancestry individuals	NA	5q22.1	NR	rs6893213-?	NR	4E-8	(Clostridium_IV)	0.223233	[0.14-0.3] unit decrease	Illumina [5293637] (imputed)	N
1425	chr5	110198113	110198114	rs6893213	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls	NA	5q22.1	SLC25A46, TSLP	rs6893213-T	0.08	8E-11		0.15	[0.11-0.19] unit increase	Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
1425	chr5	110213510	110213511	rs9784725	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	5q22.1	NR	rs9784725-?	NR	1E-12				Affymetrix [~ 8270000] (imputed)	N
1426	chr5	110256807	110256808	rs190576622	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (processing speed) x major depressive disorder interaction (1df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	5q22.1		rs190576622-T	0.01	2E-6		0.73	[0.34-1.12] unit increase	NR [NR] (imputed)	N
1426	chr5	110256807	110256808	rs190576622	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (executive function) x major depressive disorder interaction (2df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	5q22.1		rs190576622-T	0.01	4E-9				NR [NR] (imputed)	N
1426	chr5	110259076	110259077	rs10056243	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	5q22.1	SLC25A46, TMEM232	rs10056243-A	0.065764	3E-12		1.090685	[1.07-1.12]	Affymetrix [8274727] (imputed)	N
1426	chr5	110269690	110269691	rs12055046	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	5q22.1	NR	rs12055046-?	NR	1E-11				Affymetrix [~ 8270000] (imputed)	N
1427	chr5	110365792	110365793	rs111267073	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	5q22.1		rs111267073-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1427	chr5	110387124	110387125	rs62375550	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	5q22.1	NR	rs62375550-?	NR	6E-9				Affymetrix [~ 8270000] (imputed)	N
1427	chr5	110387124	110387125	rs62375550	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	5q22.1	Intergenic	rs62375550-C	0.043549	3E-9		1.0990843	[1.07-1.13]	Affymetrix [8274727] (imputed)	N
1427	chr5	110387761	110387762	rs58743367	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	5q22.1	NR	rs58743367-?	NR	2E-13				Affymetrix [~ 8270000] (imputed)	N
1427	chr5	110401871	110401872	rs1837253	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Nasal polyps	5,093 European ancestry cases, 444,966 European ancestry controls, 160 East Asian ancestry cases, 151,846 East Asian ancestry controls	NA	5q22.1		rs1837253-C	NR	2E-32		0.2789	[0.23-0.32] unit increase	Affymetrix, Illumina [25837843] (imputed)	N
1427	chr5	110401871	110401872	rs1837253	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (adrenergics, inhalants)	28,880 European ancestry cases, 147,565 European ancestry controls, 5,880 East Asian ancestry cases, 172,846 East Asian ancestry controls	NA	5q22.1		rs1837253-C	NR	1E-27		0.0996	[0.082-0.118] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1427	chr5	110401871	110401872	rs1837253	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic sinusitis	7,529 European ancestry cases, 444,966 European ancestry controls, 4,617 East Asian ancestry cases, 152,226 East Asian ancestry controls	NA	5q22.1		rs1837253-C	NR	2E-8		0.0827	[0.054-0.112] unit increase	Affymetrix, Illumina [25838895] (imputed)	N
1427	chr5	110401871	110401872	rs1837253	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Asthma	38,369 European ancestry cases, 411,131 European ancestry controls, 13,015 East Asian ancestry cases, 162,933 East Asian ancestry controls	NA	5q22.1		rs1837253-C	NR	7E-45		0.109	[0.094-0.124] unit increase	Affymetrix, Illumina [25837673] (imputed)	N
1427	chr5	110401871	110401872	rs1837253	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Asthma	13,015 East Asian ancestry cases, 162,933 East Asian ancestry controls	NA	5q22.1		rs1837253-C	0.350817159	1E-17		0.121619895	[0.094-0.149] unit increase	Illumina [13429513] (imputed)	N
1427	chr5	110401871	110401872	rs1837253	34103634	Valette K	2021-06-08	Commun Biol	Prioritization of candidate causal genes for asthma in susceptibility loci derived from UK Biobank.	Asthma	56,167 White-British ancestry cases, 352,255 White-British ancestry controls	NA	5q22.1	SLC25A46, TSLP	rs1837253-C	0.739654083276611	1E-47		0.10835559	[0.094-0.123] unit increase	Affymetrix [35186738] (imputed)	N
1427	chr5	110401871	110401872	rs1837253	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	5q22.1	TSLP	rs1837253-C	0.739349	8E-16		0.0218103	[0.017-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1427	chr5	110401871	110401872	rs1837253	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	5q22.1	TSLP	rs1837253-C	0.739331	1E-14		0.020959023	[0.016-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1427	chr5	110401871	110401872	rs1837253	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Asthma	8,216 Japanese ancestry cases, 201,592 Japanese ancestry controls	NA	5q22.1		rs1837253-C	0.351043635	4E-14		1.1360734	[1.099170099-1.174215642]	Illumina [8919992] (imputed)	N
1427	chr5	110401871	110401872	rs1837253	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	5q22.1	TSLP	rs1837253-C	0.73	8E-81				NR [> 9500000] (imputed)	N
1427	chr5	110401871	110401872	rs1837253	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	5q22.1	TSLP	rs1837253-C	0.733949	3E-57		1.114133	[1.09943653511993-1.12902587473291]	NR [9572556] (imputed)	N
1427	chr5	110401871	110401872	rs1837253	31959851	Olafsdottir TA	2020-01-20	Nat Commun	Eighty-eight variants highlight the role of T cell regulation and airway remodeling in asthma pathogenesis.	Asthma	16,247 European ancestry cases, 346,486 European ancestry controls, 52,942 cases, 355,713 controls	NA	5q22.1	TSLP, WDR36, CAMK4, SLC25A46, TMEM232, STARD4	rs1837253-C	0.73967	1E-44		1.10669	[1.09-1.12]	Affymetrix [32463443] (imputed)	N
1427	chr5	110401871	110401872	rs1837253	31719529	Lyons PA	2019-11-12	Nat Commun	Genome-wide association study of eosinophilic granulomatosis with polyangiitis reveals genomic loci stratified by ANCA status.	Eosinophilic granulomatosis with polyangiitis	534 European ancestry cases, 6,688 European ancestry controls	142 European and unknown ancestry cases, 121 European and unknown ancestry controls	5q22.1	TSLP	rs1837253-?	NR	5E-11		0.42	NR unit increase	Affymetrix [9246221] (imputed)	N
1427	chr5	110401871	110401872	rs1837253	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	5q22.1	NR	rs1837253-?	NR	5E-22				Affymetrix [~ 8270000] (imputed)	N
1427	chr5	110401871	110401872	rs1837253	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	5q22.1	NR	rs1837253-?	NR	2E-35				Affymetrix [~ 8270000] (imputed)	N
1427	chr5	110401871	110401872	rs1837253	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	5q22.1	NR	rs1837253-?	NR	3E-35				Affymetrix [~ 8270000] (imputed)	N
1427	chr5	110401871	110401872	rs1837253	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	5q22.1	NR	rs1837253-?	NR	4E-19				Affymetrix [~ 8270000] (imputed)	N
1427	chr5	110401871	110401872	rs1837253	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	5q22.1	TSLP, WDR36	rs1837253-C	0.739385	1E-51		1.1119064	[1.1-1.13]	Affymetrix [8274727] (imputed)	N
1427	chr5	110401871	110401872	rs1837253	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	5q22.1	NR	rs1837253-C	0.7398	3E-19		1.0629252	[1.05-1.08]	Affymetrix [15688218] (imputed)	N
1427	chr5	110401871	110401872	rs1837253	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	5q22.1	TSLP	rs1837253-T	0.2602	4E-44				Affymetrix [15688218] (imputed)	N
1427	chr5	110401871	110401872	rs1837253	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (childhood onset)	9,433 British ancestry cases, 318,237 British ancestry controls	NA	5q22.1	SLC25A46, TSLP	rs1837253-C	0.74	2E-27		1.211	[1.169-1.253]	Affymetrix [10894596] (imputed)	N
1427	chr5	110401871	110401872	rs1837253	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (age of onset)	37,846 British ancestry individuals	NA	5q22.1	SLC25A46, TSLP	rs1837253-C	0.74	4E-6		0.733	[0.42-1.04] unit decrease	Affymetrix [10894596] (imputed)	N
1427	chr5	110401871	110401872	rs1837253	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (adult onset)	21,564 British ancestry cases, 318,237 British ancestry controls	NA	5q22.1	SLC25A46, TSLP	rs1837253-C	0.74	3E-13		1.088	[1.064-1.113]	Affymetrix [10894596] (imputed)	N
1427	chr5	110401871	110401872	rs1837253	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (adrenergics, inhalants)	28,880 European ancestry cases, 147,565 European ancestry controls	NA	5q22.1	TSLP	rs1837253-T	0.257988	4E-23		0.1019233	[0.082-0.122] unit decrease	Affymetrix [7288503] (imputed)	N
1427	chr5	110401871	110401872	rs1837253	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma onset (childhood vs adult)	13,962 European ancestry childhood onset cases, 14,873 European ancestry adult onset cases	31,002 European ancestry childhood onset cases, 16,297 European ancestry adult onset cases	5q22.1	SLC25A46, TSLP	rs1837253-C	0.736	5E-15		1.095	[1.07-1.12]	Affymetrix [9000000] (imputed)	N
1427	chr5	110401871	110401872	rs1837253	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	5q22.1	SLC25A46, TSLP	rs1837253-?	NR	7E-94		1.186	[1.17-1.2]	Affymetrix [9000000] (imputed)	N
1427	chr5	110401871	110401872	rs1837253	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (adult onset)	26,582 European ancestry cases, 300,671 European ancestry controls	16,297 European ancestry cases, 217,711 European ancestry controls	5q22.1	SLC25A46, TSLP	rs1837253-?	NR	1E-18		1.074	[1.06-1.09]	Affymetrix [9000000] (imputed)	N
1427	chr5	110401871	110401872	rs1837253	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	5q22.1	SLC25A46, TSLP	rs1837253-C	NR	1E-41		1.11	[1.09-1.13]	Affymetrix [9000000] (imputed)	N
1427	chr5	110401871	110401872	rs1837253	30643255	Kristjansson RP	2019-01-14	Nat Genet	A loss-of-function variant in ALOX15 protects against nasal polyps and chronic rhinosinusitis.	Nasal polyps	86 European ancestry whole-genome sequenced cases, 4,280 European ancestry cases, 13,941 European ancestry whole-genome sequenced controls, 700,740 European ancestry controls	NA	5q22.1	TSLP	rs1837253-C	0.723	4E-29		1.3513513	[1.28-1.43]	Affymetrix, Illumina [up to 37123566] (imputed)	N
1427	chr5	110401871	110401872	rs1837253	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Respiratory diseases	approximately 459,000 European ancestry individuals	NA	5q22.1		rs1837253-?	NR	2E-39				NR [~ 8900000] (imputed)	N
1427	chr5	110401871	110401872	rs1837253	30552067	Shrine N	2018-12-11	Lancet Respir Med	Moderate-to-severe asthma in individuals of European ancestry: a genome-wide association study.	Asthma (moderate or severe)	5,135 European ancestry cases, 25,675 European ancestry controls	5,414 European ancestry cases, 21,471 European ancestry controls	5q22.1	TSLP	rs1837253-C	0.7416	2E-22		1.19	[1.15-1.23]	Affymetrix [33771858] (imputed)	N
1427	chr5	110401871	110401872	rs1837253	29785011	Zhu Z	2018-05-21	Nat Genet	A genome-wide cross-trait analysis from UK Biobank highlights the shared genetic architecture of asthma and allergic diseases.	Asthma or allergic disease (pleiotropy)	14,085 European asthma cases, 25,685 European ancestry allergic diseases cases, 76,768 European ancestry controls	NA	5q22.1	TSLP	rs1837253-?	NR	4E-21		1.0752687		NR [74888535] (imputed)	N
1427	chr5	110401871	110401872	rs1837253	29785011	Zhu Z	2018-05-21	Nat Genet	A genome-wide cross-trait analysis from UK Biobank highlights the shared genetic architecture of asthma and allergic diseases.	Asthma	14,085 European ancestry cases, 76,768 European ancestry controls	10,365 cases, 16,110 controls	5q22.1	TSLP	rs1837253-?	NR	2E-20		0.140412	[0.11-0.17] unit decrease	Affymetrix [74888535] (imputed)	N
1427	chr5	110401871	110401872	rs1837253	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	5q22.1	SLC25A46, TSLP	rs1837253-C	0.78	2E-31		1.07	[1.06-1.08]	Affymetrix, Illumina [8307659] (imputed)	N
1427	chr5	110401871	110401872	rs1837253	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	5q22.1	TSLP	rs1837253-C	0.7393	3E-15		0.03221306	[0.024-0.04] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1427	chr5	110401871	110401872	rs1837253	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	5q22.1	TSLP	rs1837253-C	0.7394	4E-21		0.03824089	[0.03-0.046] unit increase	Affymetrix [~ 2500000] (imputed)	N
1427	chr5	110401871	110401872	rs1837253	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	5q22.1	TSLP	rs1837253-C	0.7393	2E-18		0.0356266	[0.028-0.044] unit increase	Affymetrix [~ 2500000] (imputed)	N
1427	chr5	110401871	110401872	rs1837253	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	5q22.1	TSLP	rs1837253-C	0.7393	2E-22		0.03960412	[0.032-0.048] unit increase	Affymetrix [~ 2500000] (imputed)	N
1427	chr5	110401871	110401872	rs1837253	27611488	Almoguera B	2016-09-09	Am J Respir Crit Care Med	Identification of Four Novel Loci in Asthma in European American and African American Populations.	Asthma	819 African American non-allergic asthma cases, 2,218 African American allergic asthma cases 4,360 African American controls, 808 European American non-allergic asthma cases, 1,464 European American allergic asthma cases, 11,975 European American controls	NA	5q22.1	TSLP	rs1837253-?		4E-7	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1427	chr5	110401871	110401872	rs1837253	27611488	Almoguera B	2016-09-09	Am J Respir Crit Care Med	Identification of Four Novel Loci in Asthma in European American and African American Populations.	Asthma	819 African American non-allergic asthma cases, 2,218 African American allergic asthma cases 4,360 African American controls, 808 European American non-allergic asthma cases, 1,464 European American allergic asthma cases, 11,975 European American controls	NA	5q22.1	TLSP	rs1837253-?		7E-8				Affymetrix, Illumina [NR] (imputed)	N
1427	chr5	110401871	110401872	rs1837253	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Asthma	28,399 European ancestry cases, 128,843 European ancestry controls	NA	5q22.1	SLC25A46, TSLP	rs1837253-?	NR	3E-31		1.1415524	[1.12-1.17]	Illumina [13747813] (imputed)	N
1427	chr5	110401871	110401872	rs1837253	24388013	Ferreira MA	2013-12-30	J Allergy Clin Immunol	Genome-wide association analysis identifies 11 risk variants associated with the asthma with hay fever phenotype.	Asthma and hay fever	6,685 European ancestry cases, 14,091 European ancestry controls	878 European ancestry cases, 2,455 European ancestry controls	5q22.1	TSLP	rs1837253-C	0.71	1E-9		1.17	[1.12-1.24]	Illumina [up to 4972397] (imputed)	N
1427	chr5	110401871	110401872	rs1837253	21804549	Torgerson DG	2011-07-31	Nat Genet	Meta-analysis of genome-wide association studies of asthma in ethnically diverse North American populations.	Asthma	2,088 European ancestry cases, 1,612 African American and African Caribbean cases, 1,688 Hispanic cases	2,727 European ancestry cases, 2,147 African American and African Caribbean cases, 2,299 Hispanic cases	5q22.1	TSLP	rs1837253-?	NR	1E-14				Affymetrix, Illumina [> 2000000] (imputed)	N
1427	chr5	110401871	110401872	rs1837253	21804548	Hirota T	2011-07-31	Nat Genet	Genome-wide association study identifies three new susceptibility loci for adult asthma in the Japanese population.	Asthma	1,532 Japanese ancestry cases, 3,304 Japanese ancestry controls	5,639 Japanese ancestry cases, 24,608 Japanese ancestry controls	5q22.1	TSLP	rs1837253-C	0.35	1E-16		1.17	[1.13-1.22]	Illumina [458847]	N
1427	chr5	110402854	110402855	rs10061842	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	5q22.1	NR	rs10061842-?	NR	5E-8				Affymetrix [~ 8270000] (imputed)	N
1427	chr5	110404998	110404999	rs10455025	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pediatric asthma	27,712 European ancestry cases, 411,131 European ancestry controls, 547 East Asian ancestry cases, 161,803 East Asian ancestry controls	NA	5q22.1		rs10455025-C	NR	2E-21		0.0923	[0.073-0.111] unit increase	Affymetrix, Illumina [25832605] (imputed)	N
1427	chr5	110404998	110404999	rs10455025	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	5q22.1		rs10455025-C	NR	5E-53		0.0278	[0.024-0.031] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
1427	chr5	110404998	110404999	rs10455025	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	5q22.1	TSLP	rs10455025-C	0.35534	3E-20		0.023393	[0.018-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1427	chr5	110404998	110404999	rs10455025	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	5q22.1	TSLP	rs10455025-C	0.35532	6E-24		0.025610236	[0.021-0.031] unit increase	Affymetrix [93095623] (imputed)	N
1427	chr5	110404998	110404999	rs10455025	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q22.1	NR	rs10455025-C	0.298677	1E-83				Affymetrix, Illumina [19872809] (imputed)	N
1427	chr5	110404998	110404999	rs10455025	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	5q22.1		rs10455025-?	NR	7E-81				NR [~ 8900000] (imputed)	N
1427	chr5	110404998	110404999	rs10455025	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls, 2,149 African ancestry cases, 6,055 African ancestry controls, 1,239 Japanese ancestry cases, 3,976 Japanese ancestry controls, 606 Latino cases, 792 Latino controls	NA	5q22.1	SLC25A46, TSLP	rs10455025-C	0.34	9E-26		1.15	[1.12-1.18]	Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
1427	chr5	110404998	110404999	rs10455025	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls	NA	5q22.1	SLC25A46, TSLP	rs10455025-C	0.34	2E-25		0.14	[0.12-0.16] unit increase	Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
1427	chr5	110405674	110405675	rs3806932	20208534	Rothenberg ME	2010-03-07	Nat Genet	Common variants at 5q22 associate with pediatric eosinophilic esophagitis.	Eosinophilic esophagitis (pediatric)	181 European ancestry cases, 1,974 European ancestry controls	170 European ancestry cases, 1,130 European ancestry controls	5q22.1	WDR36	rs3806932-?	0.54	3E-9		1.85	[NR]	Illumina [~ 550000]	N
1427	chr5	110406741	110406742	rs3806933	31959851	Olafsdottir TA	2020-01-20	Nat Commun	Eighty-eight variants highlight the role of T cell regulation and airway remodeling in asthma pathogenesis.	Asthma	16,247 European ancestry cases, 346,486 European ancestry controls, 52,942 cases, 355,713 controls	NA	5q22.1	TSLP, WDR36, CAMK4, SLC25A46, TMEM232, STARD4	rs3806933-C	0.57303	1E-14		1.0506188	[1.04-1.06]	Affymetrix [32463443] (imputed)	N
1427	chr5	110406741	110406742	rs3806933	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	5q22.1	NR	rs3806933-?	NR	3E-26	(conditional)			Affymetrix [15688218] (imputed)	N
1427	chr5	110406741	110406742	rs3806933	25017104	Kottyan LC	2014-07-13	Nat Genet	Genome-wide association analysis of eosinophilic esophagitis provides insight into the tissue specificity of this allergic disease.	Eosinophilic esophagitis	657 European ancestry cases, 9,296 European ancestry controls	NA	5q22.1	TSLP	rs3806933-G	0.56	2E-8		1.37	[NR]	Illumina [1468075]	N
1427	chr5	110407506	110407507	rs2289276	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	5q22.1	NR	rs2289276-?	NR	2E-11				Affymetrix [~ 8270000] (imputed)	N
1427	chr5	110408001	110408002	rs1898671	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (glucocorticoids)	17,352 European ancestry cases, 188,348 European ancestry controls, 13,102 East Asian ancestry cases, 165,624 East Asian ancestry controls	NA	5q22.1		rs1898671-T	NR	8E-20		0.0999	[0.078-0.121] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1427	chr5	110408001	110408002	rs1898671	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (glucocorticoids)	17,352 European ancestry cases, 188,348 European ancestry controls	NA	5q22.1	TSLP	rs1898671-T	0.350684	8E-17		0.097538434	[0.075-0.12] unit increase	Affymetrix [7288503] (imputed)	N
1427	chr5	110408001	110408002	rs1898671	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma onset (childhood vs adult)	13,962 European ancestry childhood onset cases, 14,873 European ancestry adult onset cases	31,002 European ancestry childhood onset cases, 16,297 European ancestry adult onset cases	5q22.1	TSLP	rs1898671-T	0.346	8E-10		1.064	[1.04-1.08]	Affymetrix [9000000] (imputed)	N
1427	chr5	110408001	110408002	rs1898671	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (adult onset)	26,582 European ancestry cases, 300,671 European ancestry controls	16,297 European ancestry cases, 217,711 European ancestry controls	5q22.1	TSLP	rs1898671-?	NR	1E-22		1.074	[1.06-1.09]	Affymetrix [9000000] (imputed)	N
1427	chr5	110408001	110408002	rs1898671	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	5q22.1	TSLP	rs1898671-T	NR	1E-38		1.097	[1.08-1.11]	Affymetrix [9000000] (imputed)	N
1427	chr5	110408001	110408002	rs1898671	22036096	Ramasamy A	2011-11-01	J Allergy Clin Immunol	A genome-wide meta-analysis of genetic variants associated with allergic rhinitis and grass sensitization and their interaction with birth order.	Allergic rhinitis	3,933 European ancestry cases, 8,965 European ancestry controls	NA	5q22.1	TSLP	rs1898671-T	0.35	5E-6		1.15	[1.08-1.22]	Affymetrix, Illumina [2217510] (imputed)	N
1427	chr5	110409147	110409148	rs2289278	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	5q22.1	NR	rs2289278-?	NR	8E-12				Affymetrix [~ 8270000] (imputed)	N
1427	chr5	110409147	110409148	rs2289278	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	5q22.1	NR	rs2289278-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1427	chr5	110418240	110418241	rs149096812	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	5q22.1	Intergenic	rs149096812-T	0.978562	2E-8		1.1260985	[1.08-1.17]	Affymetrix [8274727] (imputed)	N
1427	chr5	110424582	110424583	rs13166760	33893285	Guindo-Martinez M	2021-04-23	Nat Commun	The impact of non-additive genetic associations on age-related complex diseases.	Allergic rhinitis	13,936 European ancestry cases, 42,701 European ancestry controls	NA	5q22.1		rs13166760-T	0.4537935	6E-10		0.92		Affymetrix [15644656] (imputed)	N
1427	chr5	110424931	110424932	rs141405779	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	5q22.1	CTC-551A13.2	rs141405779-A	0.1384	1E-34		0.04156315	[0.035-0.048] unit decrease	Affymetrix [93095623] (imputed)	N
1427	chr5	110425062	110425063	rs252716	33893285	Guindo-Martinez M	2021-04-23	Nat Commun	The impact of non-additive genetic associations on age-related complex diseases.	Asthma	9,209 European ancestry cases, 47,428 European ancestry controls	NA	5q22.1		rs252716-C	0.4299168	4E-9		1.1		Affymetrix [15607971] (imputed)	N
1427	chr5	110425062	110425063	rs252716	25407941	Sleiman PM	2014-11-19	Nat Commun	GWAS identifies four novel eosinophilic esophagitis loci.	Eosinophilic esophagitis	603 European ancestry cases, 3,637 European ancestry controls	333 European ancestry cases, 675 European ancestry controls	5q22.1	TSLP	rs252716-C	0.447	4E-14		1.516	[1.41-1.62]	Illumina [~ 2300000] (imputed)	N
1427	chr5	110425984	110425985	rs55905691	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	5q22.1	CTC-551A13.2	rs55905691-G	0.1383	8E-20		0.04736296	[0.037-0.058] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1427	chr5	110426450	110426451	rs10045577	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	5q22.1	CTC-551A13.2	rs10045577-T	0.138713	3E-31		0.03918743	[0.033-0.046] unit decrease	Affymetrix [93095623] (imputed)	N
1427	chr5	110426450	110426451	rs10045577	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	5q22.1	CTC-551A13.2	rs10045577-T	0.139	4E-17		0.04380528	[0.034-0.054] unit increase	Affymetrix [~ 2500000] (imputed)	N
1427	chr5	110426450	110426451	rs10045577	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	5q22.1	CTC-551A13.2	rs10045577-T	0.139	3E-22		0.05024269	[0.04-0.06] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1427	chr5	110426450	110426451	rs10045577	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	5q22.1	CTC-551A13.2	rs10045577-T	0.139	3E-19		0.04669612	[0.037-0.057] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1427	chr5	110426450	110426451	rs10045577	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	5q22.1	CTC-551A13.2	rs10045577-T	0.139	3E-21		0.04906191	[0.039-0.059] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1427	chr5	110427346	110427347	rs7723819	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (adrenergics, inhalants)	28,880 European ancestry cases, 147,565 European ancestry controls	NA	5q22.1	CTC-551A13.2	rs7723819-A	0.439866	9E-16		0.07299841	[0.055-0.091] unit decrease	Affymetrix [7288503] (imputed)	N
1427	chr5	110427794	110427795	rs79881201	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	5q22.1		rs79881201-C	0.639	8E-36				Affymetrix [10369434] (imputed)	N
1427	chr5	110427794	110427795	rs79881201	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	5q22.1	NR	rs79881201-T	0.35982	5E-85		0.040325	[0.036-0.044] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
1427	chr5	110427794	110427795	rs79881201	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	5q22.1	WDR36	rs79881201-T	0.3602	1E-22		0.03636485	[0.029-0.044] unit increase	Affymetrix [~ 2500000] (imputed)	N
1427	chr5	110431896	110431897	rs114442993	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	5q22.1	NR	rs114442993-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
1427	chr5	110432275	110432276	rs149205188	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	5q22.1	NR	rs149205188-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
1427	chr5	110432275	110432276	rs149205188	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	5q22.1	NR	rs149205188-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
1427	chr5	110433322	110433323	rs13357724	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	5q22.1		rs13357724-C	0.949	2E-12				Affymetrix [10369434] (imputed)	N
1427	chr5	110435489	110435490	rs2416257	19198610	Gudbjartsson DF	2009-02-08	Nat Genet	Sequence variants affecting eosinophil numbers associate with asthma and myocardial infarction.	Eosinophil counts	9,392 European ancestry individuals	12,118 European ancestry individuals, 5,212 East Asian ancestry individuals	5q22.1	TSLP, WDR36	rs2416257-G	0.85	1E-6	(EA)	6.1	[3.7-8.6] % standard unit increase	Illumina [312179]	N
1427	chr5	110449056	110449057	rs184163934	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antihistamines for systemic use)	13,984 European ancestry cases, 137,652 European ancestry controls, 10,163 East Asian ancestry cases, 168,563 East Asian ancestry controls	NA	5q22.1		rs184163934-G	NR	4E-8		0.2731	[0.18-0.37] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1427	chr5	110462038	110462039	rs11952682	31926482	Shen H	2020-01-11	Neuropsychopharmacology	Polygenic prediction and GWAS of depression, PTSD, and suicidal ideation/self-harm in a Peruvian cohort.	Suicidal or self-harm ideation	522 Peruvian cases, 2,882 Peruvian controls	NA	5q22.1	NR	rs11952682-?		7E-7		2.3798192	[NR]	NR [NR]	N
1427	chr5	110464007	110464008	rs1043828	33328473	Ahluwalia TS	2020-12-16	Nat Commun	FUT2-ABO epistasis increases the risk of early childhood asthma and Streptococcus pneumoniae respiratory illnesses.	Childhood asthma with severe exacerbations	2,866 European ancestry cases,  65,415 European ancestry controls	NA	5q22.1	WDR36	rs1043828-C	NR	1E-10		1.2	[1.14-1.27]	Illumina [up to 525976] (imputed)	N
1427	chr5	110467498	110467499	rs1438673	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pollinosis	2,894 European ancestry cases, 472,484 European ancestry controls, 18,593 East Asian ancestry cases, 153,666 East Asian ancestry controls	NA	5q22.1		rs1438673-T	NR	1E-8		0.0623	[0.041-0.084] unit decrease	Affymetrix, Illumina [25844049] (imputed)	N
1427	chr5	110467498	110467499	rs1438673	34506852	Chang X	2021-09-07	J Allergy Clin Immunol	A genome-wide association meta-analysis identifies new Eosinophilic esophagitis loci.	Eosinophilic esophagitis	1,930 European ancestry cases, 13,634 European ancestry controls	NA	5q22.1	TSLP, WDR36	rs1438673-C	0.502	6E-22		0.7	[0.65-0.76]	Illumina [11310926] (imputed)	N
1427	chr5	110467498	110467499	rs1438673	34506852	Chang X	2021-09-07	J Allergy Clin Immunol	A genome-wide association meta-analysis identifies new Eosinophilic esophagitis loci.	Eosinophilic esophagitis	1,288 European ancestry male cases, 6,548 European ancestry male controls	NA	5q22.1	TSLP, WDR36	rs1438673-C	0.506	1E-13		1.43	[1.30-1.57]	Illumina [11310926] (imputed)	N
1427	chr5	110467498	110467499	rs1438673	34116867	Tanaka N	2021-06-02	J Allergy Clin Immunol	Eight novel susceptibility loci and putative causal variants in atopic dermatitis.	Atopic dermatitis	2,597 Japanese ancestry cases, 110,504 Japanese ancestry controls, 25,685 European ancestry cases, 76,768 European ancestry controls	NA	5q22.1		rs1438673-?	NR	4E-23		0.91	[0.89-0.93]	Illumina [5170515] (imputed)	N
1427	chr5	110467498	110467499	rs1438673	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	5q22.1	NR	rs1438673-C	0.5166	2E-58		1.1007154	[1.09-1.11]	Affymetrix [15688218] (imputed)	N
1427	chr5	110467498	110467499	rs1438673	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic disease (asthma, hay fever or eczema)	106,772 European ancestry cases, 239,773 European ancestry controls	83,335 cases, 34,934 controls	5q22.1	NR	rs1438673-C	0.5166	7E-62		1.0948106	[1.08-1.11]	Affymetrix [15688218] (imputed)	N
1427	chr5	110467498	110467499	rs1438673	30552067	Shrine N	2018-12-11	Lancet Respir Med	Moderate-to-severe asthma in individuals of European ancestry: a genome-wide association study.	Asthma (moderate or severe)	5,135 European ancestry cases, 25,675 European ancestry controls	5,414 European ancestry cases, 21,471 European ancestry controls	5q22.1	WDR36	rs1438673-C	0.5078	3E-13		1.1235955	[1.09-1.16]	Affymetrix [33771858] (imputed)	N
1427	chr5	110467498	110467499	rs1438673	30013184	Waage J	2018-07-16	Nat Genet	Genome-wide association and HLA fine-mapping studies identify risk loci and genetic pathways underlying allergic rhinitis.	Allergic sensitization	8,040 European ancestry cases, 16,441 European ancestry controls	NA	5q22.1	WDR36	rs1438673-C	0.50	2E-7		1.12		Affymetrix, Illumina [16531985] (imputed)	N
1427	chr5	110467498	110467499	rs1438673	30013184	Waage J	2018-07-16	Nat Genet	Genome-wide association and HLA fine-mapping studies identify risk loci and genetic pathways underlying allergic rhinitis.	Allergic rhinitis	59,762 European and unknown ancestry cases, 152,358 European and unknown ancestry controls	60,720 European ancestry cases, 618,527 European ancestry controls	5q22.1	CAMK4, WDR36	rs1438673-C	0.4962	3E-26		1.08	[1.07-1.10]	Affymetrix, Illumina, Perlegen [16531985] (imputed)	N
1427	chr5	110467498	110467499	rs1438673	29785011	Zhu Z	2018-05-21	Nat Genet	A genome-wide cross-trait analysis from UK Biobank highlights the shared genetic architecture of asthma and allergic diseases.	Allergic disease (asthma, hay fever or eczema)	25,685 European ancestry allergic diseases cases, 76,768 European ancestry controls	NA	5q22.1	CAMK4, TSLP, WDR36	rs1438673-?	NR	5E-20		1.098901	[1.08-1.12]	Affymetrix [74888535] (imputed)	N
1427	chr5	110467498	110467499	rs1438673	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Allergy	66,973 European ancestry cases, 113,768 European ancestry controls	NA	5q22.1	WDR36, CAMK4	rs1438673-?	NR	3E-17		1.0672358	[1.05-1.08]	Illumina [12845910] (imputed)	N
1427	chr5	110467498	110467499	rs1438673	24388013	Ferreira MA	2013-12-30	J Allergy Clin Immunol	Genome-wide association analysis identifies 11 risk variants associated with the asthma with hay fever phenotype.	Asthma and hay fever	6,685 European ancestry cases, 14,091 European ancestry controls	878 European ancestry cases, 2,455 European ancestry controls	5q22.1	WDR36	rs1438673-C	0.49	3E-11		1.16	[1.11-1.21]	Illumina [up to 4972397] (imputed)	N
1427	chr5	110467498	110467499	rs1438673	23817569	Hinds DA	2013-06-30	Nat Genet	A genome-wide association meta-analysis of self-reported allergy identifies shared and allergy-specific susceptibility loci.	Self-reported allergy	53,862 European ancestry individuals	NA	5q22.1	TSLP, WDR36, CAMK4	rs1438673-C	0.4951	2E-20		0.1104	[0.087-0.134] unit increase	Illumina [2400000] (imputed)	N
1427	chr5	110469631	110469632	rs114081163	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	5q22.1	NR	rs114081163-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
1427	chr5	110470136	110470137	rs6594499	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (multivariate analysis)	477,968 European ancestry individuals	NA	5q22.1	WDR36, CAMK4	rs6594499-C	0.53	9E-12		0.029	[0.021-0.037] unit decrease	NR [NR] (imputed)	N
1427	chr5	110470136	110470137	rs6594499	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (age of onset)	117,130 European ancestry individuals	NA	5q22.1	WDR36, CAMK4	rs6594499-C	0.53	5E-12		0.029	[0.021-0.037] unit decrease	NR [7647814] (imputed)	N
1427	chr5	110470136	110470137	rs6594499	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (antihistamines for systemic use)	13,984 European ancestry cases, 137,652 European ancestry controls	NA	5q22.1	WDR36	rs6594499-A	0.48439	3E-9		0.074990384	[0.05-0.1] unit decrease	Affymetrix [7288503] (imputed)	N
1427	chr5	110470136	110470137	rs6594499	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma onset (childhood vs adult)	13,962 European ancestry childhood onset cases, 14,873 European ancestry adult onset cases	31,002 European ancestry childhood onset cases, 16,297 European ancestry adult onset cases	5q22.1	WDR36, CAMK4	rs6594499-C	0.508	2E-10		1.065	[1.05-1.08]	Affymetrix [9000000] (imputed)	N
1427	chr5	110470136	110470137	rs6594499	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	5q22.1	WDR36, CAMK4	rs6594499-?	NR	4E-66		1.134	[1.12-1.15]	Affymetrix [9000000] (imputed)	N
1427	chr5	110470136	110470137	rs6594499	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	5q22.1	WDR36, CAMK4	rs6594499-C	NR	6E-37		1.09	[1.08-1.1]	Affymetrix [9000000] (imputed)	N
1427	chr5	110470136	110470137	rs6594499	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	5q22.1		rs6594499-?	NR	3E-64				NR [~ 8900000] (imputed)	N
1427	chr5	110470136	110470137	rs6594499	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	5q22.1	WDR36, CAMK4	rs6594499-C	0.48	5E-46		1.075	[1.07-1.08]	Affymetrix, Illumina [8307659] (imputed)	N
1427	chr5	110470993	110470994	rs6594500	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	5q22.1	CAMK4, TSLP, WDR36	rs6594500-A	0.398156	4E-20		1.0603448	[1.05-1.07]	Affymetrix [8274727] (imputed)	N
1427	chr5	110471790	110471791	rs73786772	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	5q22.1	NR	rs73786772-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
1427	chr5	110471790	110471791	rs73786772	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	5q22.1	NR	rs73786772-?	NR	4E-22				Affymetrix [~ 8270000] (imputed)	N
1427	chr5	110471790	110471791	rs73786772	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	5q22.1	NR	rs73786772-?	NR	6E-11				Affymetrix [~ 8270000] (imputed)	N
1427	chr5	110481442	110481443	rs188645246	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mononucleosis	17,457 European ancestry cases, 68,446 European ancestry controls	NA	5q22.1	NR	rs188645246-?	NR	5E-6		0.4976	[0.28-0.72] unit decrease	Illumina [at least 560000] (imputed)	N
1427	chr5	110484038	110484039	rs74920379	28115739	Smith AH	2017-01-24	Mol Psychiatry	Genome-wide association study of therapeutic opioid dosing identifies a novel locus upstream of OPRM1.	Methadone dose in opioid dependence	1,027 European American cases, 383 African American cases	NA	5q22.1	WDR36	rs74920379-G	0.21658172323759783	6E-6	(AA)	0.4025	[0.23-0.58] unit decrease	Illumina [at least 988306] (imputed)	N
1428	chr5	110502428	110502429	rs17132883	24024966	Teumer A	2013-08-14	J Clin Periodontol	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (PAL4Q3)	up to 2,969 European ancestry individuals	NA	5q22.1	WDR36	rs17132883-T	0.04	2E-6	(Age 20-60 years)	2.19	[1.59-3.01]	Affymetrix, Illumina [up to 17585496] (imputed)	N
1428	chr5	110539391	110539392	rs1370967	24024966	Teumer A	2013-08-14	J Clin Periodontol	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (PAL4Q3)	up to 2,969 European ancestry individuals	NA	5q22.1	CAMK4	rs1370967-A	0.04	8E-7	(Age 20-60 years)	2.21	[1.61-3.02]	Affymetrix, Illumina [up to 17585496] (imputed)	N
1428	chr5	110555734	110555735	rs75575712	34177493	Mountford HS	2021-06-09	Front Hum Neurosci	Genome-Wide Association Study of Motor Coordination.	Motor coordination	4,542 European ancestry children	NA	5q22.1	WDR36, CAMK4	rs75575712-T	NR	8E-6		1.19	[0.67-1.71] unit increase	Illumina [4774020] (imputed)	N
1428	chr5	110558063	110558064	rs2162893	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	5q22.1	NR	rs2162893-?	NR	4E-17				Affymetrix [~ 8270000] (imputed)	N
1428	chr5	110559553	110559554	rs7714962	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	5q22.1	NR	rs7714962-?	NR	6E-9				Affymetrix [~ 8270000] (imputed)	N
1428	chr5	110564272	110564273	rs72793573	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	5q22.1	CAMK4	rs72793573-A	0.264945	3E-8		1.0405539	[1.03-1.05]	Affymetrix [8274727] (imputed)	N
1428	chr5	110566359	110566360	rs114378220	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	5q22.1		rs114378220-T	NR	6E-9		0.1108	[0.073-0.148] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1428	chr5	110566359	110566360	rs114378220	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	5q22.1		rs114378220-T	NR	1E-10		0.0304	[0.021-0.04] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
1428	chr5	110566359	110566360	rs114378220	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	5q22.1		rs114378220-C	0.926	2E-11				Affymetrix [10369434] (imputed)	N
1428	chr5	110566359	110566360	rs114378220	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	5q22.1		rs114378220-C	0.926	2E-10				Affymetrix [10369434] (imputed)	N
1428	chr5	110566359	110566360	rs114378220	34012112	Chiou J	2021-05-19	Nature	Interpreting type 1 diabetes risk with genetics and single-cell epigenomics.	Type 1 diabetes	18,942 European ancestry cases, 501,638 European ancestry controls	NA	5q22.1	CAMK4	rs114378220-T	0.070292	5E-9		0.17790234	[0.12-0.24] unit increase	Affymetrix, Illumina [62116689] (imputed)	N
1428	chr5	110566359	110566360	rs114378220	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	5q22.1	CAMK4	rs114378220-T	0.073723	5E-14		0.03324438	[0.025-0.042] unit decrease	Affymetrix [93095623] (imputed)	N
1428	chr5	110566359	110566360	rs114378220	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	5q22.1	CAMK4	rs114378220-T	0.073709	4E-17		0.0370782	[0.028-0.046] unit decrease	Affymetrix [93095623] (imputed)	N
1428	chr5	110566359	110566360	rs114378220	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q22.1	NR	rs114378220-T	0.07111	9E-21				Affymetrix, Illumina [23472807] (imputed)	N
1428	chr5	110566359	110566360	rs114378220	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	5q22.1	NR	rs114378220-T	0.073614	9E-24		0.038012	[0.031-0.045] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1428	chr5	110566359	110566360	rs114378220	32581359	Saevarsdottir S	2020-06-24	Nature	FLT3 stop mutation increases FLT3 ligand level and risk of autoimmune thyroid disease.	Autoimmune thyroid disease	30,234 European ancestry cases, 724,172 European ancestry controls	NA	5q22.1	CAMK4	rs114378220-T	0.071	3E-11		1.12	[NR]	Affymetrix, Illumina [42900000] (imputed)	N
1428	chr5	110566359	110566360	rs114378220	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	5q22.1	CAMK4	rs114378220-T	0.0637665	7E-9		0.1107751	[0.073-0.148] unit increase	Affymetrix [7288503] (imputed)	N
1428	chr5	110566359	110566360	rs114378220	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	5q22.1		rs114378220-?	NR	4E-11				NR [~ 8900000] (imputed)	N
1428	chr5	110566359	110566360	rs114378220	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Autoimmune traits	approximately 459,000 European ancestry individuals	NA	5q22.1		rs114378220-?	NR	6E-8				NR [~ 8900000] (imputed)	N
1428	chr5	110566520	110566521	rs10073038	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	5q22.1	Intergenic	rs10073038-A	0.5677	2E-8	(MTAG)	0.0101	[0.0066-0.0136] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1428	chr5	110566520	110566521	rs10073038	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	5q22.1	Intergenic	rs10073038-A	0.5677	3E-9		0.0117	[0.0078-0.0156] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1428	chr5	110567597	110567598	rs1457115	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	5q22.1	NR	rs1457115-?	NR	5E-13				Affymetrix [~ 8270000] (imputed)	N
1428	chr5	110590398	110590399	rs10478040	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	5q22.1	CAMK4, WDR36	rs10478040-C	0.949302	4E-10		1.0902368	[1.06-1.12]	Affymetrix [8274727] (imputed)	N
1428	chr5	110596491	110596492	rs11742977	25226531	St Pourcain B	2014-09-16	Nat Commun	Common variation near ROBO2 is associated with expressive vocabulary in infancy.	Expressive vocabulary in infants	6,851 European ancestry 15-18-month-old children, 6,299 European ancestry 24-30-month-old children	2,038 European ancestry 15-18-month-old children, 4,520 European ancestry 24-30-month-old children	5q22.1	NR	rs11742977-C	0.59	4E-6	(24-30 months)	0.065	[0.038-0.092] unit increase	Illumina [2449665] (imputed)	N
1428	chr5	110606054	110606055	rs1618689	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	5q22.1		rs1618689-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1428	chr5	110620829	110620830	rs306106	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	5q22.1	NR	rs306106-?	NR	4E-9				Affymetrix [~ 8270000] (imputed)	N
1429	chr5	110719186	110719187	rs77636885	23535033	Sherva R	2013-03-24	Alzheimers Dement	Genome-wide association study of the rate of cognitive decline in Alzheimer's disease.	Alzheimer's disease (cognitive decline)	303 European ancestry cases		5q22.1	CAMK4	rs77636885-?	0.03	2E-6		0.3	unit decrease	Illumina [NR] (imputed)	N
1430	chr5	110769787	110769788	rs6897106	26265036	Parra EJ	2015-08-12	Pharmacogenomics	Genome-wide association study of warfarin maintenance dose in a Brazilian sample.	Warfarin maintenance dose	180 Brazilian ancestry low dose individuals, 187 Brazilian ancestry high dose individuals	798 European ancestry individuals, 1611 Japanese ancestry individuals, 191 African American individuals	5q22.1	NR	rs6897106-C	0.354	1E-6	(conditional on rs749671,CYP2C9*2 and CYP2C9*3, Brazilians)	5.653	[NR]	Affymetrix [> 650000] (imputed)	N
1430	chr5	110772403	110772404	rs10491334	21612516	Malovini A	2011-05-25	Rejuvenation Res	Association study on long-living individuals from Southern Italy identifies rs10491334 in the CAMKIV gene that regulates survival proteins.	Longevity	410 European ancestry long-living individuals, 553 European ancestry young individuals	116 European ancestry long-living individuals, 160 European ancestry young individuals	5q22.1	CAMKIV	rs10491334-C	0.82	2E-6		1.82	[1.43-2.33]	Illumina [298715]	N
1430	chr5	110772403	110772404	rs10491334	17903302	Levy D	2007-09-19	BMC Med Genet	Framingham Heart Study 100K Project: genome-wide associations for blood pressure and arterial stiffness.	Blood pressure	Up to 1,327 individuals	NA	5q22.1	CAMK4	rs10491334-?	NR	4E-6	(DBP)			Affymetrix [70897]	N
1430	chr5	110824447	110824448	rs77485281	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein KLK1	5,361 Icelandic ancestry individuals	NA	5q22.1		rs77485281-A	0.01211	6E-12		0.115644	[0.083-0.149] unit increase	Illumina [7506463] (imputed)	N
1430	chr5	110859796	110859797	rs251130	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	5q22.1	STARD4	rs251130-G	0.73	3E-10		0.04	[0.028-0.052] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
1430	chr5	110874162	110874163	rs757231047	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	5q22.1	NR	rs757231047-?	NR	9E-6		0.0076533	[0.0043-0.011] unit increase	Affymetrix [805426] (imputed)	N
1430	chr5	110876056	110876057	rs247520	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	5q22.1		rs247520-?	NR	2E-13				NR [~ 8900000] (imputed)	N
1430	chr5	110882178	110882179	rs402848	31626034	Thomsen H	2019-10-11	Melanoma Res	Genome-wide study on uveal melanoma patients finds association to DNA repair gene TDP1.	Presence of epithelioid cells in uveal melanoma	285 European ancestry cases, 286 European ancestry controls	NA	5q22.1		rs402848-A	0.65	7E-6		1.8		Illumina [10258281] (imputed)	N
1431	chr5	110896404	110896405	rs247546	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5q22.1		rs247546-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1431	chr5	110909332	110909333	rs10054105	30410027	Gudmundsson J	2018-11-08	Nat Commun	Genome-wide associations for benign prostatic hyperplasia reveal a genetic correlation with serum levels of PSA.	Benign prostatic hyperplasia and lower urinary tract symptoms (prostate cancer excluded)	18,138 European ancestry cases, 277,213 European ancestry controls	NA			rs10054105-T	0.787	2E-11		1.1111112	[1.08-1.14]	Affymetrix, Illumina [42907111] (imputed)	N
1431	chr5	110909332	110909333	rs10054105	30410027	Gudmundsson J	2018-11-08	Nat Commun	Genome-wide associations for benign prostatic hyperplasia reveal a genetic correlation with serum levels of PSA.	Benign prostatic hyperplasia and lower urinary tract symptoms	20,621 European ancestry cases, 280,541 European ancestry controls	NA		STARD4	rs10054105-T	0.213	4E-12		1.098901	[1.08-1.14]	Affymetrix, Illumina [42907111] (imputed)	N
1431	chr5	110955410	110955411	rs6862011	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	5q22.1		rs6862011-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1431	chr5	110958781	110958782	rs11241130	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	5q22.1	NREP	rs11241130-G	0.129	8E-6	(Sleep duration )	0.04	[NR] min/d increase	Illumina [899892]	N
1431	chr5	110964780	110964781	rs1438682	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	5q22.1		rs1438682-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1431	chr5	110982339	110982340	rs1902801	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	5q22.1		rs1902801-A	NR	8E-9		0.0133	[0.0088-0.0178] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1431	chr5	110982339	110982340	rs1902801	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q22.1	NR	rs1902801-A	0.267109	2E-16				Affymetrix, Illumina [23467995] (imputed)	N
1431	chr5	110990400	110990401	rs722895	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	5q22.1	NR	rs722895-A	NR	2E-11		6.736	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1431	chr5	110990800	110990801	rs10058089	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	5q22.1		rs10058089-C	NR	4E-10		0.0153	[0.011-0.02] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
1431	chr5	110996177	110996178	rs1902800	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	5q22.1	STARD4-AS1	rs1902800-G	0.343416	5E-11		0.015425399	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1431	chr5	110996177	110996178	rs1902800	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	5q22.1	NR	rs1902800-G	0.342634	4E-12		0.013517	[0.0097-0.0173] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1431	chr5	111004757	111004758	rs17133574	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	5q22.1	TPM1	rs17133574-C	0.169870344079786	2E-6		0.0033899	[NR] unit decrease	Affymetrix [> 30000000] (imputed)	N
1431	chr5	111004990	111004991	rs255892	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	5q22.1	NR	rs255892-A	NR	6E-9		5.829	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1431	chr5	111006569	111006570	rs255896	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	5q22.1	NR	rs255896-T	NR	3E-9		5.925	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1431	chr5	111008868	111008869	rs145672352	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 1 levels	252 European ancestry individuals	NA	5q22.1		rs145672352-G	NR	1E-6		26.462	[16.06-36.86] unit increase	Illumina [NR] (imputed)	N
1431	chr5	111010071	111010072	rs26046	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	5q22.1	NR	rs26046-C	0.392644	4E-12		0.044772882	[0.032-0.057] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1431	chr5	111010071	111010072	rs26046	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	5q22.1	NR	rs26046-T	0.405	4E-8		0.00610513	[0.0039-0.0083] unit decrease	NR [9732723] (imputed)	N
1431	chr5	111010071	111010072	rs26046	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	5q22.1	Intergenic	rs26046-T	0.4001	2E-12		0.0204	[0.015-0.026] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
1431	chr5	111013694	111013695	rs10478063	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	5q22.1		rs10478063-T	NR	6E-9		0.0139	[0.0092-0.0186] unit decrease	Affymetrix, Illumina [20535842] (imputed)	N
1432	chr5	111026597	111026598	rs1145123	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	5q22.1	Intergenic	rs1145123-T	0.5191	9E-9	(MTAG)	0.0132	[0.0087-0.0177] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1432	chr5	111026597	111026598	rs1145123	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	5q22.1	NR	rs1145123-T	NR	1E-13		7.417	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1432	chr5	111028565	111028566	rs154081	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	5q22.1	NR	rs154081-A	NR	1E-8		5.679	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1432	chr5	111033605	111033606	rs79692389	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	5q22.1		rs79692389-?	NR	6E-10				NR [~ 8900000] (imputed)	N
1432	chr5	111039016	111039017	rs6869021	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	5q22.1	NR	rs6869021-T	0.313259	5E-17		0.016905	[0.013-0.021] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1432	chr5	111040545	111040546	rs27757	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	5q22.1	NR	rs27757-A	NR	9E-9		5.741	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1432	chr5	111046341	111046342	rs67968533	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	5q22.1	STARD4	rs67968533-C	0.09	5E-9		0.66	[0.44-0.88] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1432	chr5	111046341	111046342	rs67968533	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	5q22.1	STARD4	rs67968533-C	0.0882	3E-9		0.7005	[0.47-0.93] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1432	chr5	111049707	111049708	rs7735771	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	5q22.1		rs7735771-C	NR	6E-9		0.0111	[0.0074-0.0148] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1432	chr5	111051435	111051436	rs112081420	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q22.1	NR	rs112081420-C	0.0547151	9E-11				Affymetrix, Illumina [24649327] (imputed)	N
1432	chr5	111058656	111058657	rs17842602	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	5q22.1	NR	rs17842602-G	0.134554	3E-10		0.0283165	[0.019-0.037] unit increase	NR [19129689] (imputed)	N
1432	chr5	111059675	111059676	rs61215818	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	5q22.1		rs61215818-G	0.923	1E-11				Affymetrix [10369434] (imputed)	N
1432	chr5	111061015	111061016	rs57486725	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	5q22.1	STARD4-AS1, NREP	rs57486725-G	0.076499	2E-32		0.050336696	[0.042-0.059] unit decrease	Affymetrix [93095623] (imputed)	N
1432	chr5	111061016	111061017	rs59739601	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	5q22.1	NR	rs59739601-G	0.076101	2E-46		0.049497	[0.043-0.056] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1432	chr5	111061016	111061017	rs59739601	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	5q22.1	STARD4-AS1, NREP	rs59739601-G	0.0765	1E-15		0.05510638	[0.042-0.069] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1432	chr5	111061636	111061637	rs1045903	33545615	Hsu LA	2021-01-19	Atherosclerosis	Circulating chemerin levels are determined through circulating platelet counts in nondiabetic Taiwanese people: A bidirectional Mendelian randomization study.	Platelet count	17,037 Han Chinese ancestry individuals	NA	5q22.1	NREP	rs1045903-?	NR	1E-7		3.651	[2.39-4.92] unit decrease (adjusted)	Affymetrix [603527]	N
1432	chr5	111061846	111061847	rs56116444	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	5q22.1		rs56116444-G	NR	1E-23		0.0256	[0.021-0.03] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
1432	chr5	111061846	111061847	rs56116444	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	153,512 East Asian ancestry individuals	NA	5q22.1		rs56116444-G	0.309412	2E-15		0.0269235	[0.02-0.034] unit decrease	Illumina [13479135] (imputed)	N
1432	chr5	111061846	111061847	rs56116444	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	5q22.1		rs56116444-G	0.310174	5E-33		0.0428322	[0.036-0.05] unit decrease	Illumina [13478928] (imputed)	N
1432	chr5	111061846	111061847	rs56116444	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	5q22.1		rs56116444-G	NR	3E-23		0.0293	[0.024-0.035] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
1432	chr5	111061846	111061847	rs56116444	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	5q22.1		rs56116444-G	0.308765	7E-14		0.0290819	[0.021-0.037] unit increase	Illumina [13476266] (imputed)	N
1432	chr5	111061846	111061847	rs56116444	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	5q22.1	STARD4-AS1, NREP	rs56116444-G	0.075265	1E-13		0.031419687	[0.023-0.04] unit decrease	Affymetrix [93095623] (imputed)	N
1432	chr5	111061846	111061847	rs56116444	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	150,708 East Asian ancestry individuals	NA	5q22.1	NR	rs56116444-T	0.692819	3E-15		0.031156	[0.023-0.039] SD units increase	Affymetrix, Illumina [16709798] (imputed)	N
1432	chr5	111061846	111061847	rs56116444	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q22.1	NR	rs56116444-T	0.919514	2E-16				Affymetrix, Illumina [17210439] (imputed)	N
1432	chr5	111061846	111061847	rs56116444	31624269	Terao C	2019-10-17	Nat Commun	GWAS of mosaic loss of chromosome Y highlights genetic effects on blood cell differentiation.	Mosaic loss of chromosome Y (Y chromosome dosage)	95,380 Japanese men	NA	5q22.1	STARD4-AS1	rs56116444-G	0.31	9E-81		0.086	NR unit decrease	Illumina [9591901] (imputed)	N
1432	chr5	111061846	111061847	rs56116444	31624269	Terao C	2019-10-17	Nat Commun	GWAS of mosaic loss of chromosome Y highlights genetic effects on blood cell differentiation.	Mosaic loss of chromosome Y (Y chromosome dosage)	205,011 men	NA	5q22.1	STARD4-AS1	rs56116444-G	0.07	9E-36		0.027	unit increase	NR [NR]	N
1432	chr5	111061846	111061847	rs56116444	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Platelet count	108,208 Japanese ancestry individuals	NA	5q22.1	STARD4-AS1	rs56116444-?	NR	9E-22		0.04379	[0.035-0.053] unit decrease novel	Illumina [6108953] (imputed)	N
1432	chr5	111061880	111061881	rs57201028	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	5q22.1		rs57201028-T	NR	9E-54		0.0429	[0.037-0.048] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1432	chr5	111061880	111061881	rs57201028	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	5q22.1	STARD4-AS1, NREP	rs57201028-T	0.0752389999999999	8E-65		0.07276563	[0.064-0.081] unit decrease	Affymetrix [93095623] (imputed)	N
1432	chr5	111061880	111061881	rs57201028	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q22.1	NR	rs57201028-T	0.126984	8E-27				Affymetrix, Illumina [24332387] (imputed)	N
1432	chr5	111061880	111061881	rs57201028	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q22.1	NR	rs57201028-T	0.126042	9E-74				Affymetrix, Illumina [24588908] (imputed)	N
1432	chr5	111061880	111061881	rs57201028	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	145,648 East Asian ancestry individuals	NA	5q22.1	NR	rs57201028-C	0.692888	7E-29		0.044833	[0.037-0.053] SD units increase	Affymetrix, Illumina [16710488] (imputed)	N
1432	chr5	111061880	111061881	rs57201028	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	5q22.1	NR	rs57201028-C	0.924699	2E-18		0.03174	[0.025-0.039] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1432	chr5	111061880	111061881	rs57201028	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	5q22.1		rs57201028-?	NR	1E-17				NR [~ 8900000] (imputed)	N
1432	chr5	111061882	111061883	rs56084922	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	5q22.1		rs56084922-G	NR	2E-26		0.0312	[0.026-0.037] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
1432	chr5	111061882	111061883	rs56084922	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	5q22.1		rs56084922-G	0.30731	1E-15		0.031436	[0.024-0.039] unit increase	Illumina [13476299] (imputed)	N
1432	chr5	111061882	111061883	rs56084922	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	5q22.1	STARD4-AS1, NREP	rs56084922-G	0.078295	2E-12		0.029034603	[0.021-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
1432	chr5	111061882	111061883	rs56084922	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	5q22.1	STARD4-AS1, NREP	rs56084922-G	0.078205	4E-16		0.034063876	[0.026-0.042] unit increase	Affymetrix [93095623] (imputed)	N
1432	chr5	111061882	111061883	rs56084922	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	5q22.1	STARD4-AS1, NREP	rs56084922-G	0.078137	1E-14		0.032380212	[0.024-0.041] unit increase	Affymetrix [93095623] (imputed)	N
1432	chr5	111061882	111061883	rs56084922	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	5q22.1	STARD4-AS1, NREP	rs56084922-G	0.078306	8E-17		0.033274	[0.026-0.041] unit increase	Affymetrix [93095623] (imputed)	N
1432	chr5	111061882	111061883	rs56084922	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	5q22.1	STARD4-AS1, NREP	rs56084922-G	0.078297	8E-16		0.033210214	[0.025-0.041] unit increase	Affymetrix [93095623] (imputed)	N
1432	chr5	111061882	111061883	rs56084922	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	5q22.1	NR	rs56084922-G	0.077283	1E-14		0.026699	[0.02-0.033] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1432	chr5	111061882	111061883	rs56084922	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q22.1	NR	rs56084922-G	0.121501	2E-29				Affymetrix, Illumina [24246363] (imputed)	N
1432	chr5	111061882	111061883	rs56084922	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	5q22.1	NR	rs56084922-G	0.077295	1E-19		0.030825	[0.024-0.037] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
1432	chr5	111061882	111061883	rs56084922	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	121,047 East Asian ancestry individuals	NA	5q22.1	NR	rs56084922-A	0.691984	1E-14		0.03407	[0.025-0.043] SD units decrease	Affymetrix, Illumina [16286195] (imputed)	N
1432	chr5	111061882	111061883	rs56084922	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q22.1	NR	rs56084922-G	0.125018	1E-31				Affymetrix, Illumina [20825802] (imputed)	N
1432	chr5	111061882	111061883	rs56084922	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	5q22.1	NR	rs56084922-G	0.077581	7E-19		0.032033	[0.025-0.039] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
1432	chr5	111061882	111061883	rs56084922	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	119,629 East Asian ancestry individuals	NA	5q22.1	NR	rs56084922-A	0.691989	1E-17		0.037886	[0.029-0.047] SD units decrease	Affymetrix, Illumina [16286228] (imputed)	N
1432	chr5	111061882	111061883	rs56084922	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	5q22.1		rs56084922-?	NR	9E-15				NR [~ 8900000] (imputed)	N
1432	chr5	111061882	111061883	rs56084922	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular volume	108,256 Japanese ancestry individuals	NA	5q22.1	STARD4-AS1	rs56084922-?	NR	1E-11		0.03111	[0.022-0.04] unit increase novel	Illumina [6108953] (imputed)	N
1432	chr5	111061882	111061883	rs56084922	28346444	Wright DJ	2017-03-27	Nat Genet	Genetic variants associated with mosaic Y chromosome loss highlight cell cycle genes and overlap with cancer susceptibility.	Mosaic loss of chromosome Y (Y chromosome dosage)	67,034 European ancestry men	8,715 European ancestry men, 9,793 men	5q22.1	NREP	rs56084922-G	0.08	3E-15		0.005	NR unit decrease	Affymetrix [at least 641018] (imputed)	N
1432	chr5	111061882	111061883	rs56084922	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	5q22.1	STARD4-AS1, NREP	rs56084922-G	0.0769	4E-30		0.07854952	[0.065-0.092] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1432	chr5	111067185	111067185	rs147647553	33693626	Jamieson SE	2021-03-09	Clin Infect Dis	Common and rare genetic variants that could contribute to severe otitis media in an Australian Aboriginal population.	Otitis media	21 Martu ancestry cases, 370 Martu ancestry controls	NA	5q22.1		rs147647553-C	0.04	4E-6				Illumina [6724284] (imputed)	N
1432	chr5	111071624	111071625	rs7720886	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	5q22.1	C5orf13, STARD4, C5orf26	rs7720886-G	0.075	2E-6		2.87	[1.83-4.5]	Illumina [1556551]	N
1432	chr5	111083858	111083859	rs3797733	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Red blood cell count	108,794 Japanese ancestry individuals	NA	5q22.1	NREP	rs3797733-?	NR	1E-9		0.02694	[0.018-0.036] unit decrease novel	Illumina [6108953] (imputed)	N
1432	chr5	111083858	111083859	rs3797733	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin	108,054 Japanese ancestry individuals	NA	5q22.1	NREP	rs3797733-?	NR	8E-13		0.03174	[0.023-0.04] unit increase novel	Illumina [6108953] (imputed)	N
1432	chr5	111087806	111087807	rs11948283	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	349,856 European ancestry individuals, 91,908 East Asian ancestry individuals	NA	5q22.1		rs11948283-T	NR	2E-9		0.0168	[0.011-0.022] unit decrease	Affymetrix, Illumina [20529536] (imputed)	N
1432	chr5	111090123	111090124	rs3797737	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	5q22.1		rs3797737-?	NR	7E-10				NR [~ 8900000] (imputed)	N
1432	chr5	111094073	111094074	rs6594535	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Chickenpox	107,769 European ancestry cases, 15,982 European ancestry controls	NA	5q22.1	NR	rs6594535-?	NR	4E-7		0.067	[0.041-0.093] unit increase	Illumina [at least 560000] (imputed)	N
1432	chr5	111096551	111096552	rs255900	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia	11,197 European ancestry low myopic cases, 21,416 European ancestry emmetropia controls	NA	5q22.1	NR	rs255900-?	NR	6E-6		0.102066	[0.058-0.146] unit decrease	NR [13958389] (imputed)	N
1432	chr5	111101360	111101361	rs4957975	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Sutterella)	1,068 Japanese ancestry individuals	NA	5q22.1	NREP	rs4957975-T	0.28	9E-6	(female)	0.0373	[0.021-0.054] unit decrease	Illumina [6380737] (imputed)	N
1432	chr5	111107114	111107115	rs173896	20889312	Wang KS	2010-10-01	Schizophr Res	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	5q22.1	NR	rs173896-?	NR	7E-6		1.4282	[NR]	Affymetrix [722112]	N
1432	chr5	111110596	111110597	rs62371571	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	5q22.1	NREP	rs62371571-G	0.105981	5E-10		0.022287682	[0.015-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1432	chr5	111110596	111110597	rs62371571	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	5q22.1	NREP	rs62371571-G	0.105981	9E-10		0.022087377	[0.015-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1432	chr5	111124677	111124678	rs7722878	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	5q22.1	NR	rs7722878-?	NR	9E-15				Affymetrix [NR]	N
1432	chr5	111134057	111134058	rs77917390	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Reaction time	330,024 British ancestry individuals	NA	5q22.1		rs77917390-?	NR	1E-8				NR [7857346] (imputed)	N
1432	chr5	111134057	111134058	rs77917390	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	5q22.1	NREP	rs77917390-?	NR	2E-8		0.0095862	[0.0063-0.0129] unit decrease	Affymetrix [805426] (imputed)	N
1432	chr5	111134796	111134797	rs141344917	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	5q22.1		rs141344917-?	NR	2E-18				NR [~ 8900000] (imputed)	N
1433	chr5	111149183	111149184	rs35057097	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	5q22.1		rs35057097-C	NR	4E-9		0.0173	[0.012-0.023] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
1433	chr5	111150911	111150912	rs181346753	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	5q22.1	NREP	rs181346753-G	NR	4E-6		0.48664	[0.28-0.69] unit increase	Illumina [13520550] (imputed)	N
1433	chr5	111161199	111161200	rs10041953	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	5q22.1		rs10041953-T	NR	3E-13		0.0126	[0.0093-0.0159] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
1433	chr5	111162636	111162637	rs9784704	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q22.1	NR	rs9784704-C	0.579656	7E-15				Affymetrix, Illumina [24558453] (imputed)	N
1433	chr5	111183415	111183416	rs150399636	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 1 levels	252 European ancestry individuals	NA	5q22.1		rs150399636-T	NR	2E-6		23.31	[14.05-32.57] unit increase	Illumina [NR] (imputed)	N
1433	chr5	111187972	111187973	rs28710996	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	5q22.1		rs28710996-C	NR	4E-13		0.0199	[0.015-0.025] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
1433	chr5	111206320	111206321	rs10041569	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	5q22.1	NR	rs10041569-A	0.114186	2E-14		0.022477	[0.017-0.028] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
1433	chr5	111217785	111217786	rs6882649	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	5q22.1		rs6882649-T	NR	6E-10		1.04	[1.03-1.05]	Affymetrix, Illumina [NR] (imputed)	N
1433	chr5	111217785	111217786	rs6882649	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	5q22.1	NREP	rs6882649-T	0.659999999999999	4E-9	(EA)	1.0309278	[1.01-1.05] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
1433	chr5	111227196	111227197	rs4957624	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	5q22.1		rs4957624-C	NR	3E-9		0.0174	[0.012-0.023] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
1433	chr5	111230644	111230645	rs1494592	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	5q22.1		rs1494592-G	NR	2E-9		0.0145	[0.0098-0.0192] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
1433	chr5	111235303	111235304	rs1603082	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	5q22.1	NR	rs1603082-C	NR	6E-11		0.0173	[0.012-0.022] unit increase	Affymetrix [9000000] (imputed)	N
1433	chr5	111239755	111239756	rs35986445	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	5q22.1	NR	rs35986445-C	NR	4E-12		0.0224	[0.016-0.029] unit decrease	Affymetrix [9000000] (imputed)	N
1433	chr5	111246488	111246489	rs1540687	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	5q22.1	NREP	rs1540687-A	0.325513	4E-8		0.0115568	[0.0074-0.0157] unit decrease	Affymetrix [NR] (imputed)	N
1433	chr5	111252464	111252465	rs73787729	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	5q22.1	NREP	rs73787729-T	NR	5E-6		0.0339926	[0.019-0.049] unit increase	Illumina [13520550] (imputed)	N
1433	chr5	111252464	111252465	rs73787729	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	5q22.1	NREP	rs73787729-T	NR	3E-6	(women)	0.0495163	[0.029-0.07] unit increase	Illumina [13520550] (imputed)	N
1434	chr5	111293694	111293695	rs980888	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	5q22.1		rs980888-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1434	chr5	111304402	111304403	rs77486408	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	5q22.1	NREP-AS1, NREP	rs77486408-A	0.0661620000000001	6E-11		0.029388852	[0.021-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
1434	chr5	111304402	111304403	rs77486408	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	5q22.1	NR	rs77486408-A	0.065548	6E-15		0.029247	[0.022-0.037] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
1434	chr5	111308705	111308706	rs42308	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	5q22.1		rs42308-C	NR	2E-11		0.0116	[0.0083-0.0149] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1434	chr5	111315953	111315954	rs26543	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	5q22.1	NR	rs26543-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
1434	chr5	111326199	111326200	rs140529718	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	5q22.1	NREP, NREP-AS1, HMGN1P14, EPB41L4A	rs140529718-A	NR	4E-6	(number of awakenings after sleep onset, weekdays)	0.3623	[0.21-0.52] unit decrease	Affymetrix [7141204] (imputed)	N
1434	chr5	111327422	111327423	rs191226706	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 1 levels	252 European ancestry individuals	NA	5q22.1		rs191226706-A	NR	2E-6		22.565	[13.42-31.71] unit increase	Illumina [NR] (imputed)	N
1434	chr5	111357751	111357751	rs35765401	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	5q22.1	NREP-AS1	rs35765401-AC	0.062194	7E-13		0.033818744	[0.025-0.043] unit decrease	Affymetrix [93095623] (imputed)	N
1434	chr5	111368597	111368602	rs199817973	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	5q22.1	NR	rs199817973-T	0.05	1E-6	(EA)	0.0722	[0.043-0.101] unit decrease	Illumina [~ 11800000] (imputed)	N
1434	chr5	111406809	111406810	rs256277	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	5q22.1	intergenic	rs256277-T	0.623	2E-7		0.035	[0.021-0.049] unit increase	Affymetrix [7947838] (imputed)	N
1435	chr5	111422572	111422573	rs112316630	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	5q22.1	NR	rs112316630-?	NR	1E-6		0.0082247	[0.0049-0.0115] unit decrease	Affymetrix [805426] (imputed)	N
1435	chr5	111444652	111444653	rs80079800	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q22.1	NR	rs80079800-C	0.0627691	6E-13				Affymetrix, Illumina [24653286] (imputed)	N
1435	chr5	111448228	111448229	rs6883249	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	153,015 East Asian ancestry individuals	NA	5q22.1		rs6883249-T	0.581556	2E-9		0.0191469	[0.013-0.025] unit decrease	Illumina [13478961] (imputed)	N
1435	chr5	111450989	111450990	rs76749131	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 1 levels	252 European ancestry individuals	NA	5q22.1		rs76749131-C	NR	3E-6		21.777	[12.8-30.75] unit increase	Illumina [NR] (imputed)	N
1435	chr5	111471711	111471712	rs73787773	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	5q22.1	Intergenic	rs73787773-T	NR	4E-6		0.0206602	[0.012-0.029] unit decrease	Illumina [13520550] (imputed)	N
1435	chr5	111484211	111484212	rs60370278	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	5q22.1	Intergenic	rs60370278-T	NR	7E-6		0.021975	[0.012-0.032] unit decrease	Illumina [13519193] (imputed)	N
1435	chr5	111485903	111485904	rs73227498	28195142	Gudmundsson J	2017-02-14	Nat Commun	A genome-wide association study yields five novel thyroid cancer risk loci.	Thyroid cancer	2,637 European ancestry cases, 364 non-array typed, familial imputed Icelandic ancestry cases, 134,811 European ancestry controls, 152,739 non-array typed, familial imputed Icelandic ancestry controls.	NA	5q22.1	NREP, EPB41L4A	rs73227498-A	0.872	3E-10		1.37	1.23-1.49	Illumina [7100000] (imputed)	N
1435	chr5	111526307	111526308	rs17134212	29206233	Shendre A	2017-12-04	PLoS One	Genome-wide admixture and association study of subclinical atherosclerosis in the Women's Interagency HIV Study (WIHS).	Common carotid intima-media thickness in HIV negative individuals	288 Black non-Hispanic HIV-negative women	NA	5q22.1	EPB41L4A	rs17134212-T	NR	2E-6		0.02757	[NR] unit decrease	Illumina [1124301]	N
1436	chr5	111547761	111547762	rs146128029	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	5q22.2	EPB41L4A, CTC-459M5.2, EPB41L4A-AS1, SNORA13	rs146128029-C	NR	5E-6	(number of awakenings after sleep onset, weekdays)	0.3315	[0.19-0.47] unit decrease	Affymetrix [7141204] (imputed)	N
1436	chr5	111591552	111591553	rs79914694	35131881	Testori A	2022-02-07	Cancer Epidemiol Biomarkers Prev	Genetic analysis in African American children supports ancestry specific neuroblastoma susceptibility.	Neuroblastoma	629 African American cases, 2,990 African American controls	NA	5q22.2		rs79914694-A	NR	5E-7		1.262	unit increase	Illumina [8524982] (imputed)	N
1436	chr5	111597531	111597532	rs3923453	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota alpha diversity (Shannon index)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	5q22.2		rs3923453-C	NR	9E-6		4.442472	z score increase	Affymetrix, Illumina [NR] (imputed)	N
1436	chr5	111602712	111602713	rs13358904	26079190	Galfalvy H	2015-06-16	Am J Med Genet B Neuropsychiatr Genet	A genome-wide association study of suicidal behavior.	Suicide ideation score in major depressive disorder	358 European ancestry individuals	NA	5q22.2	EPB41L4A	rs13358904-G	0.21	5E-6		3.049	Suicidal ideation score increase	Illumina [794207]	N
1437	chr5	111684266	111684267	rs7732390	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 1 levels	252 European ancestry individuals	NA	5q22.2		rs7732390-C	NR	1E-7		8.1813	[5.23-11.13] unit increase	Illumina [NR] (imputed)	N
1437	chr5	111693370	111693371	rs379440	21810271	Antoni G	2011-08-02	BMC Med Genet	Combined analysis of three genome-wide association studies on vWF and FVIII plasma levels.	vWF and FVIII levels	1,624 European ancestry individuals	NA	5q22.2	EPB41L4A	rs379440-G	0.04	1E-6	(vWF levels)	0.34	[0.20-0.48] IU/dL increase	Illumina [442728]	N
1438	chr5	111822627	111822628	rs341338	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	5q22.2	NR	rs341338-?	NR	7E-9				Illumina [7760689] (imputed)	N
1438	chr5	111836990	111836991	rs13189957	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	5q22.2	EPB41L4A	rs13189957-?		4E-8				Affymetrix, Illumina [NR] (imputed)	N
1438	chr5	111857005	111857006	rs751673030	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	5q22.2	RP11-159K7.1	rs751673030-A	0.0015	1E-6		1.133	[0.67-1.59] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1438	chr5	111857005	111857006	rs751673030	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	5q22.2	RP11-159K7.1	rs751673030-A	0.0015	1E-6		1.133	[0.67-1.59] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1438	chr5	111898693	111898694	rs114749284	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Bacterial meningitis	842 European ancestry cases, 82,778 European ancestry controls	NA	5q22.2	NR	rs114749284-?	NR	2E-6		0.8833	[0.56-1.21] unit decrease	Illumina [at least 560000] (imputed)	N
1438	chr5	111909215	111909216	rs34662893	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or recurrent major depressive disorder x sex interaction (3df)	31,567 European ancestry schizophrenia cases,19,924 European ancestry bipolar disorder cases, 5,314 European ancestry recurrent major depressive disorder cases, 78,190 European ancestry controls, 1,836 East Asian ancestry schizophrenia cases, 3,383 East Asian ancestry controls	NA	5q22.2	NR	rs34662893-T	NR	9E-6				NR [NR] (imputed)	N
1439	chr5	111984533	111984534	rs72791200	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	5q22.2	ENSG00000250358	rs72791200-?	NR	1E-9		0.010417	[0.007-0.0138] unit increase	Affymetrix [805426] (imputed)	N
1439	chr5	111988945	111988946	rs6893949	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	Worry/vulnerability (special factor of neuroticism)	270,059 British ancestry individuals	NA	5q22.2	ENSG00000250358	rs6893949-T	NR	7E-12		0.009321	[0.0067-0.012] unit increase	Affymetrix [18485882] (imputed)	N
1439	chr5	112015554	112015555	rs11743328	29317602	Hall LS	2018-01-10	Transl Psychiatry	Genome-wide meta-analyses of stratified depression in Generation Scotland and UK Biobank.	Major depressive disorder	6,997 European ancestry female cases, 16,172 European ancestry female controls, 3,852 European ancestry male cases, 16,034 European ancestry male controls	NA	5q22.2	LOC102467216	rs11743328-T	NR	7E-6		0.1	[0.061-0.139] unit decrease	Affymetrix, Illumina [7105178] (imputed)	N
1439	chr5	112021398	112021399	rs7727738	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	5q22.2	APC	rs7727738-?	NR	4E-12		0.012139	[0.0087-0.0156] unit decrease	Affymetrix [805426] (imputed)	N
1439	chr5	112030172	112030173	rs2099810	33568662	Dashti HS	2021-02-10	Nat Commun	Genetic determinants of daytime napping and effects on cardiometabolic health.	Daytime nap	452,633 European ancestry individuals	541,333 European ancestry individuals	5q22.2	APC, REEP5	rs2099810-A		2E-11		0.0058	[0.004-0.0076] unit increase	Affymetrix [13304133] (imputed)	N
1439	chr5	112036633	112036634	rs56335290	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Reaction time	330,024 British ancestry individuals	NA	5q22.2		rs56335290-?	NR	1E-12				NR [7857346] (imputed)	N
1439	chr5	112036633	112036634	rs56335290	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	5q22.2	APC	rs56335290-?	NR	2E-12		0.012204	[0.0088-0.0156] unit increase	Affymetrix [805426] (imputed)	N
1439	chr5	112054085	112054086	rs6864688	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	5q22.2	APC	rs6864688-C	0.467739	7E-16		0.0149506	[0.011-0.019] unit increase	NR [13737936] (imputed)	N
1439	chr5	112054085	112054086	rs6864688	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	5q22.2		rs6864688-?	NR	2E-14				NR [~ 8900000] (imputed)	N
1439	chr5	112054085	112054086	rs6864688	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	5q22.2		rs6864688-?	NR	2E-13		0.0145225	[0.01-0.019] unit increase	Affymetrix [20259828] (imputed)	N
1439	chr5	112059593	112059594	rs3846716	35079123	Chambers T	2022-01-25	Mol Psychiatry	Genetic common variants associated with cerebellar volume and their overlap with mental disorders: a study on 33,265 individuals from the UK-Biobank.	Total cerebellar volume (excluding Crus I vermis)	33,265 European ancestry individuals	NA	5q22.2		rs3846716-A	NR	4E-8		0.0302	[0.019-0.041] unit decrease	Affymetrix [6193476] (imputed)	N
1439	chr5	112063646	112063646	rs35080996	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	5q22.2	APC	rs35080996-T	0.820272	5E-8		0.0148469	[0.0095-0.0201] unit decrease	NR [16516521] (imputed)	N
1439	chr5	112064474	112064475	rs861674	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	5q22.2	APC	rs861674-A	0.5422	1E-11		0.0128	[0.0091-0.0165] unit decrease	Affymetrix [18391927] (imputed)	N
1440	chr5	112097350	112097351	rs755229494	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	5q22.2	APC	rs755229494-G	0.0011	2E-12		1.87	[1.57-2.23]	Affymetrix, Illumina [16900397] (imputed)	N
1440	chr5	112098937	112098938	rs9647582	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	5q22.2		rs9647582-A	0.48	4E-10		6.24	z score increase	Affymetrix [9061022] (imputed)	N
1440	chr5	112116068	112116069	rs35130225	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5q22.2		rs35130225-?	NR	6E-25				NR [~ 8900000] (imputed)	N
1440	chr5	112138887	112138888	rs2952615	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	5q22.2	APC	rs2952615-?	NR	1E-9		0.010585	[0.0072-0.014] unit decrease	Affymetrix [805426] (imputed)	N
1440	chr5	112162412	112162413	rs2546110	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	5q22.2		rs2546110-A	0.42	2E-8		5.62	z score increase	Affymetrix [9061022] (imputed)	N
1440	chr5	112162412	112162413	rs2546110	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	5q22.2	NR	rs2546110-A	0.4092	1E-8				NR [9056863] (imputed)	N
1440	chr5	112176755	112176756	rs459552	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	5q22.2	NA	rs459552-A	0.7747	8E-12		0.0133	[0.0096-0.017] unit decrease	NR [~ 27400000] (imputed)	N
1440	chr5	112176755	112176756	rs459552	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	5q22.2	NA	rs459552-A	0.7747	8E-12		0.0133	[0.0096-0.017] unit decrease	NR [~ 27400000] (imputed)	N
1440	chr5	112176755	112176756	rs459552	29273807	Turcot V	2017-12-22	Nat Genet	Protein-altering variants associated with body mass index implicate pathways that control energy intake and expenditure in obesity.	Body mass index	up to 449,889 European ancestry individuals, up to 29,398 South Asian ancestry individuals, up to 27,610 African American individuals, up to 8,839 East Asian individuals, up to 10,772 Hispanic ancestry individuals	up to 196,766 European ancestry individuals	5q22.2	APC	rs459552-T	0.22199999999999998	5E-9		0.0124	[0.0083-0.0165] unit increase	Illumina [246328]	N
1440	chr5	112186151	112186152	rs6877425	29594489	Apewokin S	2018-03-28	Support Care Cancer	Host genetic susceptibility to Clostridium difficile infections in patients undergoing autologous stem cell transplantation: a genome-wide association study.	Clostridium difficile infection in multiple myeloma	57 European ancestry cases, 589 European ancestry controls	NA	5q22.2	NR	rs6877425-?		3E-6				Illumina [892589]	N
1440	chr5	112188455	112188456	rs454968	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	5q22.2	CTC-554D6.1	rs454968-T	0.35519	4E-8		0.0109508	[0.007-0.0149] unit decrease	Affymetrix [NR] (imputed)	N
1441	chr5	112212913	112212914	rs114461222	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental longevity (combined parental age at death)	45,627 middle-aged British individuals	NA	5q22.2	NR	rs114461222-?	NR	7E-6		0.16136	[0.091-0.232] unit decrease	Affymetrix [9658292] (imputed)	N
1441	chr5	112221868	112221869	rs818427	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	5q22.2	APC	rs818427-T	0.3118	2E-8		0.0342	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
1441	chr5	112242967	112242968	rs469727	18839057	Lesch KP	2008-10-07	J Neural Transm (Vienna)	Molecular genetics of adult ADHD: converging evidence from genome-wide association and extended pedigree linkage studies.	Attention deficit hyperactivity disorder	343 European ancestry cases, 250 European ancestry controls, 54 controls	NA	5q22.2	REEP5	rs469727-?	NR	8E-6				Affymetrix [504219]	N
1441	chr5	112251429	112251430	rs173466	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	5q22.2	NR	rs173466-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1441	chr5	112254376	112254377	rs153560	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	5q22.2		rs153560-A	NR	7E-17		0.0112	[0.0087-0.0137] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1441	chr5	112257590	112257591	rs151980	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	5q22.2	REEP5	rs151980-?	NR	3E-8		0.0096693	[0.0062-0.0131] unit increase	Affymetrix [805426] (imputed)	N
1441	chr5	112258119	112258120	rs62366963	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5q22.2		rs62366963-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1441	chr5	112265492	112265493	rs154346	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	5q22.2	REEP5	rs154346-?	NR	4E-8		0.0095484	[0.0061-0.013] unit increase	Affymetrix [805426] (imputed)	N
1441	chr5	112281077	112281078	rs34773768	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	5q22.2		rs34773768-T	NR	7E-9		0.0135	[0.009-0.018] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
1441	chr5	112302156	112302157	rs1624259	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	Worry/vulnerability (special factor of neuroticism)	270,059 British ancestry individuals	NA	5q22.2	DCP2	rs1624259-A	NR	6E-10		0.0084039	[0.0057-0.0111] unit decrease	Affymetrix [18485882] (imputed)	N
1442	chr5	112344964	112344965	rs4705746	33742053	Wells HRR	2021-03-19	Sci Rep	Genome-wide association study suggests that variation at the RCOR1 locus is associated with tinnitus in UK Biobank.	Tinnitus (severest)	87,314 British ancestry individuals	NA	5q22.2	NR	rs4705746-C	NR	3E-7		0.00722469	[0.0045-0.01] unit decrease	Affymetrix [9740198] (imputed)	N
1442	chr5	112345942	112345943	rs13159449	32902719	Hebbar P	2020-09-09	Hum Genet	Genome-wide landscape establishes novel association signals for metabolic traits in the Arab population.	Waist circumference	2,732 Kuwaiti ancestry individuals	NA	5q22.2	DCP2	rs13159449-?	NR	3E-7		5.108	NR unit increase	Illumina [up to 1520000] (imputed)	N
1442	chr5	112366677	112366678	rs4705752	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	5q22.2		rs4705752-A	0.4955	2E-11		0.14183779	[0.098-0.185] mmHg increase	Affymetrix, Illumina [242865] (imputed)	N
1442	chr5	112366677	112366678	rs4705752	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Hypertension	810,865 European ancestry individuals	354,096 European ancestry individuals	5q22.2		rs4705752-A	0.4969	1E-10		6.42264	z score increase	Affymetrix, Illumina [239843] (imputed)	N
1442	chr5	112366677	112366678	rs4705752	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	5q22.2		rs4705752-A	0.4955	6E-10		0.08322938	[0.056-0.11] mmHg increase	Affymetrix, Illumina [242866] (imputed)	N
1442	chr5	112373717	112373718	rs4075350	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	5q22.2		rs4075350-A	0.684034	3E-12		0.0150119	[0.011-0.019] unit decrease	Illumina [13479295] (imputed)	N
1442	chr5	112373717	112373718	rs4075350	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	5q22.2	MCC	rs4075350-?	NR	8E-14		0.0228496	[0.017-0.029] unit decrease	Illumina [27896057] (imputed)	N
1442	chr5	112379288	112379289	rs2227948	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	5q22.2	NR	rs2227948-A	0.50545	2E-8		0.00461067	[0.003-0.0063] unit increase	Affymetrix [16582909] (imputed)	N
1442	chr5	112379288	112379289	rs2227948	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	5q22.2	NR	rs2227948-A	0.50545	2E-9		0.00560111	[0.0038-0.0074] unit increase	Affymetrix [16582965] (imputed)	N
1442	chr5	112389001	112389002	rs6594669	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	5q22.2		rs6594669-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1442	chr5	112394502	112394503	rs4705763	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	5q22.2		rs4705763-C	0.5358	2E-10		0.0089	[0.0062-0.0116] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1442	chr5	112394502	112394503	rs4705763	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	5q22.2	Intergenic	rs4705763-C	0.5358	2E-9	(MTAG)	0.0079	[0.0054-0.0104] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1442	chr5	112395948	112395949	rs4705767	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	5q22.2	NR	rs4705767-?	NR	3E-8	(cerebellar vermal lobules VIII X)			NR [9227495] (imputed)	N
1442	chr5	112398769	112398770	rs10478102	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	5q22.2	NR	rs10478102-?	NR	7E-15	(cerebellar vermal lobules VIII X)			NR [9227495] (imputed)	N
1442	chr5	112408669	112408670	rs111231787	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD33+ HLA DR+ CD14dim %CD33+ HLA DR+	1,858 Sardinian (founder/genetic isolate) ancestry individuals	NA	5q22.2		rs111231787-T	0.00552	3E-8		1.244	[0.81-1.68] unit increase	Illumina [17203588] (imputed)	N
1442	chr5	112409353	112409353	rs565478702	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	5q22.2	NR	rs565478702-?	NR	5E-8	(cerebellar vermal lobules VIII X)			NR [9227495] (imputed)	N
1442	chr5	112411033	112411034	rs114236244	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	5q22.2		rs114236244-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1442	chr5	112429987	112429988	rs78445230	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	5q22.2	NR	rs78445230-?	NR	9E-6		8.9659	[1.38-16.55] unit decrease	Illumina [at least 560000] (imputed)	N
1442	chr5	112438836	112438837	rs72803246	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	5q22.2	NR	rs72803246-?	NR	5E-8		0.009474	[0.0061-0.0129] unit increase	Affymetrix [805426] (imputed)	N
1442	chr5	112444219	112444220	rs6594682	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	5q22.2	NR	rs6594682-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
1442	chr5	112444681	112444682	rs12517187	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		5q22.2	MCC	rs12517187-C	0.565455	3E-9		0.00824621	[0.0055-0.011] unit decrease	Affymetrix [12370749]	N
1442	chr5	112452240	112452241	rs12109548	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	5q22.2		rs12109548-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1442	chr5	112455466	112455467	rs4078252	24483146	Li L	2014-02-01	BMC Genomics	Discovery of genetic biomarkers contributing to variation in drug response of cytidine analogues using human lymphoblastoid cell lines.	Response to cytadine analogues (cytosine arabinoside)	60 European ancestry lymphoblastoid cell lines, 54 African American lymphoblastoid cell lines, 60 Han Chinese ancestry lymphoblastoid cell lines	NA	5q22.2	NR	rs4078252-?		2E-7				Affymetrix, Illumina [1348798]	N
1443	chr5	112480103	112480104	rs10519336	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	5q22.2		rs10519336-A	NR	4E-8		0.0135	[0.0088-0.0182] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
1443	chr5	112490628	112490629	rs7714361	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	5q22.2	MCC	rs7714361-A	0.76633	9E-9		0.0136348	[0.009-0.0183] unit decrease	Affymetrix [NR] (imputed)	N
1443	chr5	112520778	112520779	rs77075675	31497858	Dumitrescu L	2019-09-01	Brain	Sex differences in the genetic predictors of Alzheimer's pathology.	Neurofibrillary tangles	3,275 European ancestry women	NA	5q22.2	MCC	rs77075675-T	0.011807	5E-6		1.326023	[0.76-1.9] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1443	chr5	112534887	112534888	rs12656003	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	5q22.2		rs12656003-C	NR	4E-9		0.012	[0.0081-0.0159] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
1443	chr5	112542526	112542527	rs1822489	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	5q22.2	NR	rs1822489-G	NR	4E-9		0.0151	[0.01-0.02] unit decrease	Affymetrix [9000000] (imputed)	N
1443	chr5	112542526	112542527	rs1822489	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	5q22.2	NA	rs1822489-A	0.3177	2E-10		0.0122	[0.0085-0.0159] unit increase	NR [~ 27400000] (imputed)	N
1443	chr5	112546476	112546477	rs10519339	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q22.2	NR	rs10519339-A	0.02265	1E-8	(FERMT2)	0.06751	NR unit increase	Illumina [1671387] (imputed)	N
1443	chr5	112553562	112553563	rs35676551	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	5q22.2		rs35676551-A	NR	8E-12		0.0379	[0.027-0.049] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
1443	chr5	112556502	112556503	rs76206262	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q22.2	NR	rs76206262-G	0.01742	4E-9	(FERMT2)	0.07796	NR unit increase	Illumina [1671387] (imputed)	N
1443	chr5	112580289	112580290	rs17323670	20889312	Wang KS	2010-10-01	Schizophr Res	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	5q22.2	NR	rs17323670-?	NR	7E-6		1.7476	[NR]	Affymetrix [722112]	N
1444	chr5	112612989	112612990	rs10056847	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	5q22.2		rs10056847-G	0.28	2E-10		6.39	z score increase	Affymetrix [9061022] (imputed)	N
1444	chr5	112615416	112615417	rs77843857	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q22.2	NR	rs77843857-G	0.0122	4E-9	(FERMT2)	0.08993	NR unit increase	Illumina [1671387] (imputed)	N
1444	chr5	112651629	112651630	rs116278501	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	5q22.2	MCC	rs116278501-G	NR	6E-6	(EA)			Illumina [up to 11995908] (imputed)	N
1444	chr5	112651629	112651630	rs116278501	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	5q22.2	MCC	rs116278501-G	NR	6E-6				Illumina [up to 11995908] (imputed)	N
1444	chr5	112680336	112680337	rs1116547	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Cerebral amyloid angiopathy	1,673 cases, 1,134 controls	NA	5q22.2	MCC	rs1116547-T	0.1269	7E-6		0.396	[0.22-0.57] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1444	chr5	112684505	112684506	rs115303527	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		MCC	rs115303527-?	NR	3E-11		2.67996	[NR] unit increase	Affymetrix [NR] (imputed)	N
1444	chr5	112715373	112715374	rs6594713	20308991	Kim S	2010-03-23	Mol Psychiatry	Integrative genome-wide association analysis of cytoarchitectural abnormalities in the prefrontal cortex of psychiatric disorders.	Brain cytoarchitecture	14 European ancestry bipolar cases, 15 European ancestry depression cases, 13 European ancestry schizophrenia cases, 14 European ancestry controls	NA	5q22.2	MCC	rs6594713-?	0.21	2E-6				Affymetrix [309531]	N
1445	chr5	112723566	112723567	rs1318772	21326311	Bhatnagar P	2011-02-17	J Hum Genet	Genome-wide association study identifies genetic variants influencing F-cell levels in sickle-cell patients.	F-cell distribution in sickle cell anaemia	440 African American individuals	NA	5q22.2	TSSK1	rs1318772-G	0.33	1E-6		0.91	[0.54-1.28] unit decrease	Illumina [660740]	N
1445	chr5	112746685	112746685	rs754026694	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		MCC	rs754026694-?	NR	1E-9	(female)	2.14324	[NR] unit increase	Affymetrix [NR] (imputed)	N
1445	chr5	112753583	112753584	rs255877	30067744	Howe LJ	2018-08-01	PLoS Genet	Investigating the shared genetics of non-syndromic cleft lip/palate and facial morphology.	Philtrum width	6,136 European ancestry individuals	NA	5q22.2	Intergenic	rs255877-G		4E-10		0.2	[0.14-0.26] unit increase	Illumina [at least 968515] (imputed)	N
1445	chr5	112760873	112760874	rs10063334	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	5q22.2	NR	rs10063334-C	NR	1E-8		0.013	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
1445	chr5	112785073	112785074	rs186979686	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q22.2	NR	rs186979686-A	0.01045	4E-9	(CTH)	0.9595	NR unit increase	Illumina [1671387] (imputed)	N
1445	chr5	112809727	112809728	rs367943	28566273	Scott RA	2017-05-31	Diabetes	An Expanded Genome-Wide Association Study of Type 2 Diabetes in Europeans.	Type 2 diabetes	up to 26,676 European ancestry cases, up to 132,532 European ancestry controls	14,545 European ancestry cases, 38,994 European ancestry controls	5q22.2	NR	rs367943-C	0.660	6E-7		1.05	[1.03-1.07]	Affymetrix, Illumina [at least 11579618] (imputed)	N
1445	chr5	112824165	112824166	rs348941	31324189	Kim W	2019-07-19	Respir Res	DSP variants may be associated with longitudinal change in quantitative emphysema.	Emphysema annual change measurement in smokers (adjusted lung density)	4,427 European ancestry individuals, 1,158 African American individuals	NA	5q22.2	MCC	rs348941-C	NR	9E-6		0.085	[0.048-0.122] unit decrease	Illumina [NR] (imputed)	N
1445	chr5	112825031	112825032	rs348938	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	5q22.2	MCC	rs348938-C	NR	1E-8		0.0166577	[0.011-0.022] unit decrease	Affymetrix [321114] (imputed)	N
1446	chr5	112863549	112863550	rs75711984	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Sensorimotor dexterity	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	5q22.2	ZNF354B	rs75711984-C	NR	3E-6		0.33035547	[0.17-0.49] unit increase	Illumina [> 6200000] (imputed)	N
1446	chr5	112866907	112866908	rs4415069	34020725	Reddy JS	2021-05-21	Acta Neuropathol Commun	Genome-wide analysis identifies a novel LINC-PINT splice variant associated with vascular amyloid pathology in Alzheimer's disease.	Cerebral amyloid angiopathy x APOEe4 status interaction in Alzheimer's disease	534 European ancestry APOEe4 carriers, 287 European ancestry APOEe4 non-carriers	NA		YTHDC2	rs4415069-T	0.47	3E-6				Illumina [1679420] (imputed)	N
1446	chr5	112887995	112887996	rs12186798	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	5q22.2	NR	rs12186798-G	0.19	4E-8		0.013	[0.0085-0.0175] unit increase	Affymetrix [2446094] (imputed)	N
1446	chr5	112887995	112887996	rs12186798	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	5q22.2	NR	rs12186798-G	0.19	5E-8				Affymetrix [2446094] (imputed)	N
1446	chr5	112919759	112919760	rs56206672	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	5q22.2		rs56206672-?	NR	7E-8				NR [~ 8900000] (imputed)	N
1446	chr5	112927685	112927686	rs10077431	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	5q22.2	YTHDC2	rs10077431-A	0.214668130453798	5E-8		0.0487	[0.031-0.066] unit decrease	NR [5035015] (imputed)	N
1446	chr5	112935405	112935406	rs4410636	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota relative abundance (bacterial taxa)	up to 858 Metropolitan French ancestry individuals	NA	5q22.2	NR	rs4410636-?	NR	3E-8	(Eubacterium_ruminantium)	0.503191	[0.33-0.68] unit decrease	Illumina [5293637] (imputed)	N
1447	chr5	112996653	112996654	rs17135859	21326311	Bhatnagar P	2011-02-17	J Hum Genet	Genome-wide association study identifies genetic variants influencing F-cell levels in sickle-cell patients.	F-cell distribution in sickle cell anaemia	440 African American individuals	NA	5q22.2	YTHDC2	rs17135859-C	0.19	8E-6		0.97	[0.54-1.40] unit increase	Illumina [660740]	N
1447	chr5	113018176	113018177	rs890924	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5q22.2	YTHDC2	rs890924-T	0.485254	3E-8	(28 ms)	0.0304405	[0.019-0.042] unit increase	Affymetrix [10000000] (imputed)	N
1447	chr5	113018176	113018177	rs890924	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5q22.2	YTHDC2	rs890924-T	0.485254	3E-8	(26 ms)	0.0305568	[0.019-0.042] unit increase	Affymetrix [10000000] (imputed)	N
1447	chr5	113030163	113030164	rs4621553	21658281	Aouizerat BE	2011-06-10	BMC Cardiovasc Disord	GWAS for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease.	Sudden cardiac arrest	88 European ancestry cases, 517 European ancestry controls	NA	5q22.2	intergenic	rs4621553-?	0.22	4E-8	(Recessive)	1.4	[1.24-1.58]	Affymetrix [319222]	N
1447	chr5	113092958	113092959	rs931210	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5q22.2	MCC	rs931210-?	NR	6E-6	(uridine diphosphate)	0.18868186	[0.11-0.27] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1448	chr5	113136520	113136521	rs185531658	33201861	Lahm H	2020-11-17	J Clin Invest	Congenital heart disease risk loci identified by genome-wide association study in European patients.	Congenital heart disease (septal defects)	1,074 European ancestry cases, 8,486 European ancestry controls	NA	5q22.3	NR	rs185531658-?		6E-8		2.16	[1.67-3.90]	Affymetrix, Illumina [9216527] (imputed)	N
1448	chr5	113136520	113136521	rs185531658	33201861	Lahm H	2020-11-17	J Clin Invest	Congenital heart disease risk loci identified by genome-wide association study in European patients.	Congenital heart disease	4,034 European ancestry cases, 8,486 European ancestry controls	NA	5q22.3	NR	rs185531658-?		5E-9		2.16	[1.67-2.80]	Affymetrix, Illumina [9216527] (imputed)	N
1448	chr5	113140818	113140819	rs17337110	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 277)	19,670 European ancestry individuals	NA	5q22.3		rs17337110-?	NR	2E-8				NR [9705931] (imputed)	N
1448	chr5	113151208	113151209	rs7727332	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Hepatitis B	1,425 European ancestry cases, 218,180 European ancestry controls	NA	5q22.3	NR	rs7727332-?	NR	8E-6		1.144	[0.71-1.58] unit decrease	Illumina [at least 560000] (imputed)	N
1450	chr5	113395480	113395481	rs11241261	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Hippocampal sclerosis	310 cases, 2,576 controls	NA	5q22.3	intergenic	rs11241261-T	0.1491	2E-6		0.5443	[0.32-0.77] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1450	chr5	113410816	113410817	rs115958812	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Gamma glutamyl transferase levels in low alcohol consumption	8,716 individuals	NA	5q22.3	NR	rs115958812-?	NR	3E-6		0.0644	[0.037-0.092] unit decrease	Illumina [~ 7800000] (imputed)	N
1450	chr5	113421942	113421943	rs76420936	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	5q22.3	intergenic	rs76420936-A	0.0137	2E-6		1.26314	[1.17-1.36]	NR [9372253] (imputed)	N
1450	chr5	113455546	113455547	rs73260443	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	5q22.3	ENSG00000251628	rs73260443-?	NR	6E-9		0.014660899	[0.0097-0.0196] unit decrease	NR [7306098]	N
1451	chr5	113550416	113550417	rs6894710	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5q22.3	YTHDC2	rs6894710-?	NR	2E-6	(sucrose)	0.18239506	[0.11-0.26] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1451	chr5	113577163	113577164	rs4705644	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	5q22.3	KCNN2	rs4705644-A	NR	9E-7	(between families)	4.905	unit decrease	Affymetrix [up to 15107142] (imputed)	N
1451	chr5	113578306	113578307	rs10065369	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	5q22.3	KCNN2	rs10065369-T	NR	7E-6	(sleep onset, weekdays)	0.2506	[0.14-0.36] unit increase	Affymetrix [7141204] (imputed)	N
1451	chr5	113611624	113611625	rs4400118	30700811	Wigmore EM	2019-01-31	Pharmacogenomics J	Genome-wide association study of antidepressant treatment resistance in a population-based cohort using health service prescription data and meta-analysis with GENDEP.	Antidepressant treatment resistance (number of drugs prescribed)	3,452 European ancestry individuals	NA	5q22.3	DNAH5, TRIO	rs4400118-?		5E-7		0.29	[0.18-0.4] unit increase	NR [7395460] (imputed)	N
1451	chr5	113617537	113617538	rs34922122	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q22.3	NR	rs34922122-T	0.0122	3E-13	(CCDC58)	0.01571	NR unit increase	Illumina [1671387] (imputed)	N
1451	chr5	113617537	113617538	rs34922122	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q22.3	NR	rs34922122-T	0.0122	2E-8	(GSN)	0.04267	NR unit increase	Illumina [1671387] (imputed)	N
1452	chr5	113641144	113641145	rs11958855	33585033	Hayashi S	2021-01-29	Biomed Rep	A genome-wide association study identifying the SNPs predictive of rapid joint destruction in patients with rheumatoid arthritis.	joint destruction in rheumatoid arthritis (rapid vs slow)	32 Japanese ancestry rapid joint destruction individuals, 208 Japanese ancestry slow joint destruction individuals	NA	5q22.3	KCNN2	rs11958855-?	NR	9E-9			NR	Illumina [up to 317503]	N
1452	chr5	113641144	113641145	rs11958855	33585033	Hayashi S	2021-01-29	Biomed Rep	A genome-wide association study identifying the SNPs predictive of rapid joint destruction in patients with rheumatoid arthritis.	joint destruction in rheumatoid arthritis (rapid vs slow)	30 Japanese ancestry rapid joint destruction individuals, 198 Japanese ancestry slow joint destruction individuals	NA	5q22.3	KCNN2	rs11958855-?	NR	2E-7			NR	Illumina [up to 317503]	N
1452	chr5	113658231	113658232	rs3104222	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	5q22.3	Intergenic	rs3104222-T	0.2443	3E-10	(MTAG)	0.0121	[0.0084-0.0158] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1452	chr5	113658231	113658232	rs3104222	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	5q22.3	Intergenic	rs3104222-T	0.2406	1E-8	(MTAG)	0.0087	[0.0058-0.0116] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1452	chr5	113736415	113736416	rs716845	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	5q22.3	KCNN2	rs716845-A	0.28	1E-10	(EA)	1.05	[1.04-1.07]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1452	chr5	113736415	113736416	rs716845	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	5q22.3	KCNN2	rs716845-A	0.27	1E-13		1.06	[1.04-1.08]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1452	chr5	113737061	113737062	rs337705	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	5q22.3	KCNN2	rs337705-G	0.375	2E-16		1.06	[1.04-1.07]	Illumina [34740186] (imputed)	N
1452	chr5	113748570	113748571	rs337711	28416818	Christophersen IE	2017-04-17	Nat Genet	Large-scale analyses of common and rare variants identify 12 new loci associated with atrial fibrillation.	Atrial fibrillation	15,979 European ancestry cases, 102,776 European ancestry controls, 641 African American cases, 5,234 African American controls, 837 Japanese ancestry cases, 3,293 Japanese controls, 277 Hispanic cases, 3,081 Hispanic controls,197 Brazilian ancestry cases, 758 Brazilian ancestry controls.	8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls.	5q22.3	KCNN2	rs337711-T	0.39	3E-8		1.07	[1.05-1.11]	Affymetrix, Illumina [11795432] (imputed)	N
1452	chr5	113749459	113749460	rs1013168	33990960	Hong M	2021-05-14	Eur J Clin Invest	Ethnic similarities in genetic polymorphisms associated with atrial fibrillation: Far East Asian vs European populations.	Atrial fibrillation	9,118 East Asian ancestry cases, 33,467 East Asian ancestry controls	NA	5q22.3	KCNN2	rs1013168-G	NR	1E-10		1.19	[1.13-1.26]	NR [2286360] (imputed)	N
1452	chr5	113758984	113758985	rs337684	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atrial fibrillation/atrial flutter	29,212 European ancestry cases, 400,539 European ancestry controls, 4,150 East Asian ancestry cases, 155,540 East Asian ancestry controls	NA	5q22.3		rs337684-C	NR	6E-9		0.0577	[0.038-0.077] unit increase	Affymetrix, Illumina [25830072] (imputed)	N
1453	chr5	113798985	113798986	rs17136627	23677057	Kim JJ	2013-05-16	J Hum Genet	Identification of KCNN2 as a susceptibility locus for coronary artery aneurysms in Kawasaki disease using genome-wide association analysis.	Coronary arterial lesions in patients with Kawasaki disease	17 Korean ancestry cases, 123 Korean ancestry controls	32 Korean ancestry cases, 191 Korean ancestry controls	5q22.3	KCNN2	rs17136627-A	0.008	2E-8		12.6	[4.13-38.5]	Affymetrix [652397]	N
1453	chr5	113801422	113801423	rs13188074	30804558	Grove J	2019-02-25	Nat Genet	Identification of common genetic risk variants for autism spectrum disorder.	Autism spectrum disorder	18,381 European ancestry cases, 27,969 European ancestry controls	2,119 European ancestry cases, 142,379 European ancestry controls	5q22.3	Intergenic	rs13188074-A	0.391	2E-6		1.064	[NR]	Illumina [9112387] (imputed)	N
1453	chr5	113815529	113815530	rs13188819	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	5q22.3	Intergenic	rs13188819-T	0.5128	5E-13	(MTAG)	0.0129	[0.0094-0.0164] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1453	chr5	113815529	113815530	rs13188819	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	5q22.3	Intergenic	rs13188819-T	0.5128	6E-11		0.0128	[0.0089-0.0167] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1453	chr5	113832262	113832263	rs1364934	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	5q22.3	Intergenic	rs1364934-A	0.5193	2E-9	(MTAG)	0.0138	[0.0093-0.0183] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1453	chr5	113832779	113832780	rs10519387	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	5q22.3	NR	rs10519387-?	NR	2E-6		4.798	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1453	chr5	113849293	113849294	rs400028	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	5q22.3	KCNN2	rs400028-G	0.138	5E-6	(Adiponectin )	0.03	[NR] ng/mL increase	Illumina [899892]	N
1453	chr5	113851235	113851235	rs34597645	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (computer use)	408,815 European ancestry individuals	NA	5q22.3	NR	rs34597645-?		9E-9		0.0157341	[0.01-0.021] unit increase	Affymetrix [19400418] (imputed)	N
1453	chr5	113852049	113852050	rs10519388	25201988	Rietveld CA	2014-09-08	Proc Natl Acad Sci U S A	Common genetic variants associated with cognitive performance identified using the proxy-phenotype method.	Educational attainment	106,736 European ancestry individuals	NA	5q22.3	intergenic	rs10519388-T	0.835	5E-7		0.029	[NR] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1453	chr5	113856053	113856054	rs624896	27958378	Floyd JS	2016-12-13	Pharmacogenomics J	Large-scale pharmacogenomic study of sulfonylureas and the QT, JT and QRS intervals: CHARGE Pharmacogenomics Working Group.	JT interval (sulfonylurea treatment interaction)	2,095 European ancestry exposed individuals, 42,907 European ancestry unexposed individuals, 1,167 African American exposed individuals, 10,564 African American unexposed individuals, 794 Hispanic/Latino American exposed individuals, 14,330 Hispanic/Latino American unexposed individuals	NA	5q22.3	KCNN2	rs624896-?	NR	9E-7		6.0	[3.65-8.35] ms decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1453	chr5	113866597	113866598	rs660001	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	5q22.3		rs660001-?	NR	4E-12				NR [~ 8900000] (imputed)	N
1453	chr5	113866597	113866598	rs660001	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	5q22.3		rs660001-A	0.2113	2E-21		0.0164	[0.013-0.02] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1453	chr5	113866597	113866598	rs660001	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	5q22.3	NR	rs660001-A	0.2106	1E-10		0.017516147	NR unit decrease	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
1453	chr5	113875159	113875160	rs406204	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	5q22.3	ENSG00000246316	rs406204-?	NR	3E-13		0.01769974	[0.013-0.022] unit decrease	NR [7306098]	N
1453	chr5	113875159	113875160	rs406204	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Worry too long after an embarrassing experience	367,725 European ancestry individuals	NA	5q22.3	NR	rs406204-T	0.206853	5E-8		5.45	z score decrease	NR [10847151] (imputed)	N
1453	chr5	113875956	113875957	rs418939	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	5q22.3	ENSG00000246316	rs418939-T	NR	4E-8		0.017604107	[0.011-0.024] unit increase	Affymetrix [NR]	N
1453	chr5	113885295	113885296	rs7736264	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	5q22.3		rs7736264-?	NR	4E-11				NR [~ 8900000] (imputed)	N
1453	chr5	113898580	113898581	rs406413	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	5q22.3	Intergenic	rs406413-A	0.787	6E-20	(MTAG)	0.0184	[0.014-0.022] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1453	chr5	113898580	113898581	rs406413	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	5q22.3		rs406413-A	0.7898	2E-21	(conditional-joint)	0.0164	[0.013-0.02] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1453	chr5	113898580	113898581	rs406413	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	5q22.3	Intergenic	rs406413-A	0.7898	6E-23	(MTAG)	0.0158	[0.013-0.019] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1454	chr5	113916922	113916923	rs382784	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability (MTAG)	436,124 European ancestry individuals	NA	5q22.3	ENSG00000246316	rs382784-?	NR	3E-8		5.534	z score decrease	Affymetrix, Illumina, Perlegen [7333576] (imputed)	N
1454	chr5	113918722	113918723	rs75437274	34620984	Skuladottir AT	2021-10-07	Commun Biol	A genome-wide meta-analysis uncovers six sequence variants conferring risk of vertigo.	Vertigo	48,072 European ancestry cases, 894,541 European ancestry controls	NA	5q22.3		rs75437274-C	NR	4E-6		1.11885		Affymetrix, Illumina [62056310] (imputed)	N
1454	chr5	113939574	113939575	rs383618	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	5q22.3	Intergenic	rs383618-T	0.2971	4E-14	(MTAG)	0.0189	[0.014-0.024] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1454	chr5	113939756	113939757	rs381779	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	5q22.3	NR	rs381779-?	NR	2E-6		4.792	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1454	chr5	113941713	113941714	rs405321	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	5q22.3	Intergenic	rs405321-A	0.3042	8E-14	(MTAG)	0.0145	[0.011-0.018] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1454	chr5	113963562	113963563	rs1991228	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	5q22.3	NR	rs1991228-C	NR	2E-8		5.585	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1454	chr5	113980909	113980910	rs2553522	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	5q22.3	NR	rs2553522-?	NR	5E-8				Affymetrix [~ 8270000] (imputed)	N
1454	chr5	113987779	113987780	rs17669543	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	5q22.3	Intergenic	rs17669543-G	0.7731	2E-8		0.0152	[0.0099-0.0205] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1454	chr5	113987897	113987898	rs1402025	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	5q22.3		rs1402025-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1454	chr5	113988892	113988893	rs12514965	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	5q22.3		rs12514965-T	0.7388	4E-9		44.89993	z score increase	NR [6814003]	N
1454	chr5	114020738	114020739	rs116252606	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Abstraction and mental flexibility	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	5q22.3	intergenic	rs116252606-C	NR	3E-6		0.3420131	[0.19-0.5] unit decrease	Illumina [> 6200000] (imputed)	N
1454	chr5	114032424	114032425	rs285902	34424336	Mobuchon L	2021-08-23	J Natl Cancer Inst	Different Pigmentation Risk Loci for High-Risk Monosomy 3 and Low-Risk Disomy 3 Uveal Melanomas.	Uveal melanoma	1,142 European ancestry cases, 882 European ancestry controls	NA	5q22.3		rs285902-A	NR	2E-6		0.65	[0.55-0.78]	Illumina [7488175] (imputed)	N
1455	chr5	114082719	114082720	rs158359	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	5q22.3		rs158359-T	NR	1E-9		0.013	[0.0089-0.0171] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1455	chr5	114090289	114090290	rs34314	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	5q22.3	NR	rs34314-T	0.2952	1E-8	(East Asian)	0.2474	[0.16-0.33] unit increase	Illumina [6200000] (imputed)	N
1455	chr5	114096601	114096602	rs433750	32589924	Bi W	2020-06-23	Am J Hum Genet	A Fast and Accurate Method for Genome-Wide Time-to-Event Data Analysis and Its Application to UK Biobank.	Essential hypertension (time to event)	76,566 British ancestry cases, 206,305 British ancestry controls	NA	5q22.3	LOC101927078	rs433750-?	NR	3E-8				NR [~ 24000000] (imputed)	N
1455	chr5	114127528	114127529	rs508296	29855537	Hirata T	2018-05-31	Sci Rep	Japanese GWAS identifies variants for bust-size, dysmenorrhea, and menstrual fever that are eQTLs for relevant protein-coding or long non-coding RNAs.	Menstruation quality of life impact (loss of concentration)	995 Japanese ancestry female cases, 4,739 Japanese ancestry female controls	1,081 Japanese ancestry female cases, 4,533 Japanese ancestry female controls	5q22.3	NR	rs508296-T	0.288755799	9E-6		0.16685836	[0.093-0.241] unit increase	Affymetrix [536506]	N
1455	chr5	114134962	114134963	rs2169955	32047268	von Berg J	2020-02-11	Eur J Hum Genet	Alternate approach to stroke phenotyping identifies a genetic risk locus for small vessel stroke.	Cardioembolic stroke (CCSc classification)	3,000 European and African ancestry cases, 28,026 European and unknown ancestry controls	NA	5q22.3	intergenic	rs2169955-?	NR	4E-8		1.1111112	NR	Illumina [~ 10156805] (imputed)	N
1455	chr5	114140180	114140181	rs1020992	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	5q22.3	NR	rs1020992-A	0.6086	4E-8	(East Asian)	0.2481	[0.16-0.34] unit decrease	Illumina [6200000] (imputed)	N
1456	chr5	114220889	114220890	rs149247928	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q22.3	NR	rs149247928-A	0.01045	2E-8	(TNC)	0.06957	NR unit increase	Illumina [1671387] (imputed)	N
1456	chr5	114221504	114221505	rs4596374	30531953	International League Against Epilepsy Consortium on Complex Epilepsies	2018-12-10	Nat Commun	Genome-wide mega-analysis identifies 16 loci and highlights diverse biological mechanisms in the common epilepsies.	Generalized epilepsy	3,708 European ancestry cases, 61 African American cases, 24,218 European ancestry controls, 2,584 African American controls	NA	5q22.3	KCNN2	rs4596374-C	0.45	7E-10		6.16	NR unit increase	Affymetrix, Illumina [~ 5000000] (imputed)	N
1456	chr5	114242490	114242491	rs142034933	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	5q22.3	NR	rs142034933-?	NR	5E-10	(AA)	1.3274	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1456	chr5	114268469	114268470	rs55670112	25087078	Anney RJ	2014-07-30	Lancet Neurol	Genetic determinants of common epilepsies: a meta-analysis of genome-wide association studies.	Epilepsy	405 European ancestry cases, 127 African American cases, 248 cases, 2,330 European ancestry genetic generalised epilepsy cases, 81 African American genetic generalised epilepsy cases, 195 genetic generalised epilepsy cases, 3,277 European ancestry focal epilepsy cases, 222 African American focal epilepsy cases, 487 Han Chinese ancestry focal epilepsy cases, 1,324 focal epilepsy cases, up to 17,441 European ancestry controls, up to 2,843 African American controls, up to 2,875 Han Chinese ancestry controls, up to 2,998 controls	NA	5q22.3	intergenic	rs55670112-C	0.47	6E-8	(GGE)	1.18	[1.10-1.26]	Affymetrix, Illumina [NR] (imputed)	N
1457	chr5	114375551	114375552	rs4475250	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	5q22.3	TRIM36	rs4475250-A	0.5829	3E-6	(Japanese)	0.2523	[0.15-0.36] unit decrease	Illumina [6200000] (imputed)	N
1457	chr5	114375551	114375552	rs4475250	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	5q22.3	TRIM36	rs4475250-A	0.5829	6E-6	(Japanese)	0.219	[0.12-0.31] unit decrease	Illumina [6200000] (imputed)	N
1457	chr5	114375551	114375552	rs4475250	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	5q22.3	KCNN2, TRIM36	rs4475250-G		3E-7	(EA)	0.306	unit increase	Affymetrix [at least 2696785] (imputed)	N
1457	chr5	114375551	114375552	rs4475250	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	5q22.3	KCNN2, TRIM36	rs4475250-G		2E-8		0.303	unit increase	Affymetrix [at least 2696785] (imputed)	N
1457	chr5	114375551	114375552	rs4475250	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	5q22.3	KCNN2, TRIM36	rs4475250-G		2E-10		0.243	unit increase	Affymetrix [at least 2696785] (imputed)	N
1457	chr5	114375551	114375552	rs4475250	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	5q22.3	KCNN2, TRIM36	rs4475250-G		4E-8		0.193	unit increase	Affymetrix [at least 2696785] (imputed)	N
1457	chr5	114375551	114375552	rs4475250	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	5q22.3	KCNN2, TRIM36	rs4475250-G		2E-6	(EA)	0.186	unit increase	Affymetrix [at least 2696785] (imputed)	N
1457	chr5	114375551	114375552	rs4475250	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	5q22.3	KCNN2, TRIM36	rs4475250-G		7E-9		0.136	unit increase	Affymetrix [at least 2696785] (imputed)	N
1457	chr5	114375684	114375685	rs4475251	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption interaction (2df test)	91,110 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	237,996 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,315 European ancestry non-drinkers, 2,761 African ancestry non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	5q22.3	TRIM36	rs4475251-T	0.48	8E-12	(Asian, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1457	chr5	114375684	114375685	rs4475251	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption interaction (2df test)	63,607 European ancestry drinkers, 10,193 African American or Afro-Caribbean drinkers, 2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,492 European ancestry non-drinkers, 11,223 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,058 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	5q22.3	TRIM36	rs4475251-T	0.48	2E-14	(Asian, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1457	chr5	114375684	114375685	rs4475251	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption interaction (2df test)	63,607 European ancestry drinkers, 10,193 African American or Afro-Caribbean drinkers, 2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,492 European ancestry non-drinkers, 11,223 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,058 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	5q22.3	TRIM36	rs4475251-T	0.44	5E-10	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1457	chr5	114384416	114384417	rs11241305	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	5q22.3		rs11241305-A	NR	4E-11		0.0323	[0.023-0.042] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1457	chr5	114389825	114389826	rs10061288	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls, 49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	5q22.3		rs10061288-G	NR	5E-12		0.0398	[0.028-0.051] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1457	chr5	114389825	114389826	rs10061288	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls	NA	5q22.3	RP11-438C19.2	rs10061288-A	0.485343	1E-8		0.045694385	[0.03-0.061] unit increase	Affymetrix [7288503] (imputed)	N
1457	chr5	114390120	114390121	rs10077885	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	5q22.3	TRIM36	rs10077885-A	0.5842	5E-6	(Japanese)	0.2487	[0.14-0.36] unit decrease	Illumina [6200000] (imputed)	N
1457	chr5	114390120	114390121	rs10077885	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure (cigarette smoking interaction)	80,552 European ancestry individuals, 27,118 African individuals, 13,438 Asian individuals, 8,805 Hispanic individuals	305,513 European ancestry individuals, 7,786 African individuals, 148,932 Asian individuals, 13,533 Hispanic individuals, 4,414 Brazilian individuals	5q22.3	TRIM36	rs10077885-?	NR	2E-17				Affymetrix, Illumina [18800000] (imputed)	N
1457	chr5	114390120	114390121	rs10077885	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure (cigarette smoking interaction)	80,552 European ancestry individuals, 27,118 African individuals, 13,438 Asian individuals, 8,805 Hispanic individuals	305,513 European ancestry individuals, 7,786 African individuals, 148,932 Asian individuals, 13,533 Hispanic individuals, 4,414 Brazilian individuals	5q22.3	TRIM36	rs10077885-?		2E-17				Affymetrix, Illumina [18800000] (imputed)	N
1457	chr5	114390120	114390121	rs10077885	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Systolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	5q22.3	TRIM36	rs10077885-A	0.496	4E-6	(EA, initial)	0.333	[0.19-0.47] unit decrease	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
1457	chr5	114390120	114390121	rs10077885	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Diastolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	5q22.3	TRIM36	rs10077885-A	0.496	2E-6	(EA, initial)	0.209	[0.12-0.3] unit decrease	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
1457	chr5	114390120	114390121	rs10077885	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Systolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	5q22.3	TRIM36	rs10077885-A	0.501	2E-10		0.284	[0.2-0.37] mm Hg decrease	Affymetrix, Illumina, Perlegen [128272]	N
1457	chr5	114390120	114390121	rs10077885	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Diastolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	5q22.3	TRIM36	rs10077885-A	0.501	4E-11		0.1735	[0.12-0.23] mm Hg decrease	Affymetrix, Illumina, Perlegen [128272]	N
1457	chr5	114392511	114392512	rs4235770	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls, 22,356 East Asian ancestry cases, 156,370 East Asian ancestry controls	NA	5q22.3		rs4235770-G	NR	1E-12		0.0561	[0.041-0.072] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1457	chr5	114393180	114393181	rs6894014	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls	NA	5q22.3	RP11-438C19.2	rs6894014-T	0.485217	8E-13		0.056612507	[0.041-0.072] unit increase	Affymetrix [7288503] (imputed)	N
1457	chr5	114394414	114394415	rs147202915	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	5q22.3	intergenic	rs147202915-T	0.4659	1E-13		0.2407	[0.18-0.3] mmHg increase	Affymetrix [NR] (imputed)	N
1457	chr5	114394851	114394852	rs62379970	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	5q22.3		rs62379970-C	NR	8E-12		0.0131	[0.0094-0.0168] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
1457	chr5	114396549	114396550	rs199794659	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	5q22.3		rs199794659-G	NR	9E-10		0.0116	[0.0079-0.0153] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1457	chr5	114413517	114413518	rs62380051	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	5q22.3	TRIM36, LOC101927078	rs62380051-?		7E-6	(dominant)	0.151	[0.004-0.298] unit increase	Illumina [1492601] (imputed)	N
1457	chr5	114413517	114413518	rs62380051	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	5q22.3	TRIM36, LOC101927078	rs62380051-?		2E-6	(additive)	0.134	[0.079-0.189] unit increase	Illumina [1492601] (imputed)	N
1458	chr5	114430609	114430610	rs2974609	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	5q22.3		rs2974609-?	NR	1E-12				NR [~ 8900000] (imputed)	N
1458	chr5	114470438	114470439	rs142262004	34469433	Ashvetiya T	2021-09-01	PLoS One	Identification of novel genetic susceptibility loci for thoracic and abdominal aortic aneurysms via genome-wide association study using the UK Biobank Cohort.	Thoracic aortic aneurysms	435 European, Indian, Caribbean, African ancestry cases, 8,700 European, Indian, Caribbean, African ancestry ancestry controls	NA	5q22.3		rs142262004-?	NR	8E-7		3.83732		NR [NR] (imputed)	N
1458	chr5	114471108	114471109	rs1422070	32989287	Cuellar-Partida G	2020-09-28	Nat Hum Behav	Genome-wide association study identifies 48 common genetic variants associated with handedness.	Left-handedness	1,766,671 European ancestry individuals	NA	5q22.3	TRIM36	rs1422070-A	0.5954	3E-11		0.9752728	[NR]	Illumina [12493444] (imputed)	N
1458	chr5	114479469	114479470	rs6594877	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	5q22.3		rs6594877-A	0.38	8E-9		5.77	z score increase	Affymetrix [9061022] (imputed)	N
1458	chr5	114524397	114524398	rs7736737	29594489	Apewokin S	2018-03-28	Support Care Cancer	Host genetic susceptibility to Clostridium difficile infections in patients undergoing autologous stem cell transplantation: a genome-wide association study.	Clostridium difficile infection in multiple myeloma	57 European ancestry cases, 589 European ancestry controls	NA	5q22.3	NR	rs7736737-?		3E-6				Illumina [892589]	N
1459	chr5	114567026	114567027	rs3805586	30294719	Zeng Y	2018-08-24	JAMA Netw Open	Sex Differences in Genetic Associations With Longevity.	Longevity	564 Han Chinese ancestry male centenarian cases, 1,614 Han Chinese ancestry female centenarian cases, 773 Han Chinese ancestry male middle-aged controls, 1,526 Han Chinese ancestry female middle-aged controls	NA	5q22.3	PGGT1B	rs3805586-?	0.35	9E-6	(female)	1.275	[1.15-1.42]	Illumina [5595657] (imputed)	N
1459	chr5	114588632	114588633	rs17137580	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Growth-regulated protein alpha levels	3,505 Finnish ancestry individuals	NA	5q22.3	NR	rs17137580-G		8E-6		0.3465	[0.19-0.5] SD units increase	NR [10700000] (imputed)	N
1459	chr5	114621010	114621011	rs73780096	33495597	Harper AR	2021-01-25	Nat Genet	Common genetic variants and modifiable risk factors underpin hypertrophic cardiomyopathy susceptibility and expressivity.	Hypertrophic cardiomyopathy (sarcomere negative)	170 African ancestry cases, 93 Hispanic/Latino cases, 52 East Asian ancestry cases, 1,444 European ancestry cases, 94 South Asian ancestry cases, 21 cases, 738 African ancestry controls, 78 Hispanic/Latino controls, 212 East Asian ancestry controls, 24,161 European ancestry controls, 1,132 South Asian ancestry controls, 1,023 controls	NA	5q22.3	CCDC112	rs73780096-C	0.936619	2E-7		0.448366	[0.28-0.62] unit increase	Affymetrix [8590397] (imputed)	N
1459	chr5	114654232	114654233	rs1455853	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	5q22.3	NR	rs1455853-G	0.01	5E-6		1.04	[-0.9788-3.0588]	Affymetrix [at least 143006] (imputed)	N
1459	chr5	114660929	114660930	rs181000387	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	5q22.3	NR	rs181000387-A	0.99	7E-7		1.05	[-1.0472-3.1472]	Affymetrix [at least 143006] (imputed)	N
1460	chr5	114693673	114693674	rs10075047	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		5q22.3	Intergenic	rs10075047-A	0.032	5E-6	(liability model)	0.21	[0.11-0.31] unit decrease	NR [19725427] (imputed)	N
1460	chr5	114715488	114715489	rs17137701	33625064	Cindi Z	2021-02-17	J Acquir Immune Defic Syndr	Genetic Associations with Weight Gain among South Africans who Initiated Dolutegravir- and Tenofovir-containing Regimens.	Response to tenofovir alafenamide (body weight gain)	160 Black South African individuals	NA	5q22.3	LOC105379130	rs17137701-?	NR	6E-8				Illumina [NR] (imputed)	N
1460	chr5	114806818	114806819	rs257063	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	5q22.3	NR	rs257063-T	0.740602	5E-11		0.013818	[0.0097-0.0179] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1460	chr5	114806818	114806819	rs257063	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q22.3	NR	rs257063-T	0.711635	1E-10				Affymetrix, Illumina [23114412] (imputed)	N
1460	chr5	114806818	114806819	rs257063	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	5q22.3	NR	rs257063-T	0.741226	2E-11		0.014793	[0.01-0.019] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
1460	chr5	114808015	114808016	rs257056	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	5q22.3	NR	rs257056-T	0.740429	4E-10		0.015825199	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1460	chr5	114808015	114808016	rs257056	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	5q22.3		rs257056-T	0.740457	2E-9		0.015246207	[0.01-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1460	chr5	114811423	114811424	rs144031782	34620984	Skuladottir AT	2021-10-07	Commun Biol	A genome-wide meta-analysis uncovers six sequence variants conferring risk of vertigo.	Vertigo	48,072 European ancestry cases, 894,541 European ancestry controls	NA	5q22.3		rs144031782-G	NR	4E-6		0.61681		Affymetrix, Illumina [62056310] (imputed)	N
1460	chr5	114813470	114813471	rs2255735	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q22.3	NR	rs2255735-G	0.876036	3E-10				Affymetrix, Illumina [24649327] (imputed)	N
1461	chr5	114849821	114849822	rs17137937	29679657	Ferreira MA	2018-04-18	J Allergy Clin Immunol	Eleven loci with new reproducible genetic associations with allergic disease risk.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	5q22.3	TICAM2	rs17137937-T	0.07483	3E-6	(conditional)	0.0424768	NR unit increase	NR [NR]	N
1461	chr5	114880592	114880593	rs13177180	34356046	Oluwafemi OO	2021-07-01	Genes (Basel)	Genome-Wide Association Studies of Conotruncal Heart Defects with Normally Related Great Vessels in the United States.	Conotruncal heart defects with normally related great vessels (without 22q.11.2 deletion syndrome)	294 European ancestry cases, 2,976 European ancestry controls, 641 trios	NA	5q22.3		rs13177180-?	NR	5E-6				Illumina [3311160] (imputed)	N
1461	chr5	114880592	114880593	rs13177180	28468790	Agopian AJ	2017-06-01	Circ Cardiovasc Genet	Genome-Wide Association Studies and Meta-Analyses for Congenital Heart Defects.	Conotruncal heart defects (inherited effects)	483 European ancestry trios, 406 European ancestry cases, 2,976 European ancestry controls, 355 European and other ancestry trios, 187 non-European ancestry trios.	NA	5q22.3	FEM1C	rs13177180-?	NR	2E-6		1.28418	[1.16-1.42]	Illumina [at least 4756722] (imputed)	N
1461	chr5	114911659	114911660	rs116503642	29160301	Fabbri C	2017-11-21	Pharmacogenomics J	New insights into the pharmacogenomics of antidepressant response from the GENDEP and STAR*D studies: rare variant analysis and high-density imputation.	Response to antidepressants (symptom improvement)	2,145 European ancestry individuals	NA	5q22.3	FEM1C, LOC101927100, TICAM2, TMED7, TMED7-TICAM2	rs116503642-?	NR	5E-6		0.1432	NR unit increase	Affymetrix, Illumina [7062950] (imputed)	N
1461	chr5	114913929	114913930	rs11740401	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Lingual gyrus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	5q22.3	NR	rs11740401-?		7E-6				Illumina [4322238] (imputed)	N
1461	chr5	114949765	114949766	rs78821571	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Chronic sinus infection	5,291 European ancestry cases, 79,622 European ancestry controls	NA	5q22.3	NR	rs78821571-?	NR	9E-6		0.4828	[0.28-0.68] unit increase	Illumina [at least 560000] (imputed)	N
1462	chr5	114992715	114992716	rs35535005	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	5q22.3	TMED7	rs35535005-A	NR	8E-11		0.022631	[0.016-0.029] unit increase	Affymetrix [321114] (imputed)	N
1462	chr5	114995826	114995827	rs17475053	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	5q22.3		rs17475053-G	NR	4E-36		0.0175	[0.015-0.02] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1462	chr5	114995826	114995827	rs17475053	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	5q22.3		rs17475053-G	0.361935	3E-12		0.0146983	[0.011-0.019] unit increase	Illumina [13479295] (imputed)	N
1462	chr5	114995826	114995827	rs17475053	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	5q22.3	TMED7	rs17475053-G	NR	8E-13		0.0247596	[0.018-0.032] unit increase	Affymetrix [323123] (imputed)	N
1462	chr5	115000193	115000194	rs7730206	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	5q22.3	CTC-505O3.3	rs7730206-G	NR	2E-9		0.0185543	[0.013-0.025] unit increase	Affymetrix [323123] (imputed)	N
1462	chr5	115016389	115016390	rs201257518	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	5q22.3	LOC102467217, CDO1	rs201257518-?	NR	2E-12		0.0209211	[0.015-0.027] unit increase	Illumina [27896057] (imputed)	N
1462	chr5	115017721	115017722	rs7727485	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	5q22.3	NR	rs7727485-?	NR	1E-15				Affymetrix [~ 8270000] (imputed)	N
1462	chr5	115022379	115022380	rs55778236	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5q22.3		rs55778236-?	NR	5E-46				NR [~ 8900000] (imputed)	N
1462	chr5	115042408	115042409	rs66841274	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	5q22.3	CTC-505O3.3	rs66841274-C	NR	1E-9		0.0179232	[0.012-0.024] unit increase	Affymetrix [321016] (imputed)	N
1462	chr5	115050361	115050362	rs251891	28388302	Petros Z	2017-04-01	OMICS	Genome-Wide Association and Replication Study of Hepatotoxicity Induced by Antiretrovirals Alone or with Concomitant Anti-Tuberculosis Drugs.	Liver injury in combined anti-retroviral and anti-tuberculosis drug-treated HIV with tuberculosis	27 Ethiopian cases with HIV and tuberculosis, 159 Ethiopian controls with HIV and tuberculosis.	8 Ethiopian cases with HIV and tuberculosis, up to 108 Ethiopian controls with HIV and tuberculosis.	5q22.3	TMED7	rs251891-A	0.11	4E-6		5.2	[2.9-9.5]	Illumina [662807]	N
1462	chr5	115069089	115069090	rs62371708	30954325	Kamboh MI	2019-03-11	Neurobiol Aging	Population-based genome-wide association study of cognitive decline in older adults free of dementia: identification of a novel locus for the attention domain.	Age-related cognitive decline (language) (slope of z-scores)	1,145 European ancestry individuals	NA	5q22.3	LOC102467217, CDO1	rs62371708-T	0.21	7E-6		0.21	unit decrease	Illumina [5600000] (imputed)	N
1462	chr5	115075590	115075591	rs67282569	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	5q22.3	CTC-505O3.2	rs67282569-T	NR	5E-9		0.0186055	[0.012-0.025] unit increase	Affymetrix [321114] (imputed)	N
1463	chr5	115120433	115120434	rs6862909	25411281	Dashti HS	2014-10-08	Am J Clin Nutr	Meta-analysis of genome-wide association studies for circulating phylloquinone concentrations.	Circulating phylloquinone levels	2,138 European ancestry individuals	NA	5q22.3	CDO1	rs6862909-T	0.01	1E-7	(Model 2)	0.96	[0.61-1.31] unit decrease	Affymetrix, Illumina [2543887] (imputed)	N
1463	chr5	115138747	115138748	rs13174348	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	5q22.3	NR	rs13174348-G	0.784686077436582	3E-6	(IGP54)	0.1823	[0.11-0.26] unit increase	Illumina [~ 2500000] (imputed)	N
1463	chr5	115138747	115138748	rs13174348	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	5q22.3	NR	rs13174348-G	0.784686077436582	3E-6	(IGP14)	0.1823	[0.11-0.26] unit increase	Illumina [~ 2500000] (imputed)	N
1463	chr5	115143283	115143284	rs35053218	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	5q22.3		rs35053218-A	NR	3E-11		0.0169	[0.012-0.022] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
1463	chr5	115150333	115150334	rs4920894	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	5q22.3	NR	rs4920894-?	NR	1E-13				Affymetrix [NR]	N
1463	chr5	115152693	115152694	rs34869	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals	5q22.3		rs34869-G	0.577997	7E-12		0.05947	[0.041-0.078] decrease	Affymetrix [11014269] (imputed)	N
1463	chr5	115152693	115152694	rs34869	32528159	Choquet H	2020-06-11	Commun Biol	A multiethnic genome-wide analysis of 44,039 individuals identifies 41 new loci associated with central corneal thickness.	Central corneal thickness	32,292 European ancestry individuals, 9,623 East Asian ancestry individuals, 1,367 Hispanic/Latino individuals, 757 African American  individuals	NA	5q22.3	CDO1	rs34869-?	NA	1E-14		1.95	[1.46-2.44] unit decrease	Affymetrix [5541230] (imputed)	N
1463	chr5	115152693	115152694	rs34869	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Central corneal thickness	16,204 European ancestry individuals	NA	5q22.3	CDO1	rs34869-C	0.437	2E-12		2.797	[2.02-3.58] ?m increase	Affymetrix, Illumina [9249813] (imputed)	N
1463	chr5	115152693	115152694	rs34869	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	5q22.3	CDO1	rs34869-G	0.5762	4E-10		0.085	[0.057-0.113] unit decrease	Affymetrix [~ 11900000] (imputed)	N
1463	chr5	115160052	115160053	rs10434761	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	5q22.3	ATG12	rs10434761-G	0.85433	2E-14		0.00251522	[0.0019-0.0032] unit decrease	Affymetrix [13995440] (imputed)	N
1463	chr5	115160052	115160053	rs10434761	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	5q22.3	CDO1, ATG12	rs10434761-A	0.14	4E-11		6.6	z-score increase	Affymetrix [4311822] (imputed)	N
1463	chr5	115160052	115160053	rs10434761	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	5q22.3	NR	rs10434761-A	NR	3E-10		0.0213	[0.015-0.028] unit increase	Affymetrix [9000000] (imputed)	N
1464	chr5	115265994	115265995	rs6890690	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	5q23.1		rs6890690-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1464	chr5	115270031	115270032	rs13181748	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	5q23.1	NR	rs13181748-G	0.402082	2E-10		0.012468	[0.0086-0.0163] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
1464	chr5	115274392	115274393	rs13355364	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	5q23.1		rs13355364-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1464	chr5	115296944	115296945	rs12516208	25378659	Lemaitre RN	2014-11-06	J Lipid Res	Genetic loci associated with circulating levels of very long-chain saturated fatty acids.	Very long-chain saturated fatty acid levels (fatty acid 20:0)	10,129 European ancestry individuals	NA	5q23.1	FLJ90650	rs12516208-C	NR	4E-6		4.598	[NR] Z score increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1464	chr5	115301383	115301384	rs12153672	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	5q23.1	NR	rs12153672-A	0.131	3E-6	(IFNAR2_of_monocytes)			Illumina [5084123] (imputed)	N
1464	chr5	115306292	115306293	rs2115040	31194736	Tiensuu H	2019-06-13	PLoS Genet	Risk of spontaneous preterm birth and fetal growth associates with fetal SLIT2.	Spontaneous preterm birth without premature rupture of membranes	101 Finnish ancestry infant cases, 419 Finnish ancestry infant controls	NA	5q23.1	LVRN	rs2115040-?	NR	4E-6		2.3255813		Illumina [6778521] (imputed)	N
1464	chr5	115321818	115321819	rs1366200	25367360	Li Q	2014-11-04	Hum Genet	Genome-wide association study for refractive astigmatism reveals genetic co-determination with spherical equivalent refractive error: the CREAM consortium.	Refractive astigmatism	8,487 European ancestry cases aged 25 years or older, 23,481 European ancestry controls aged 25 years or older, 907 European ancestry cases aged less than 25 years, 4,733 European ancestry controls aged less than 25 years, 3,076 Asian ancestry cases aged 25 years or older, 6,219 Asian ancestry controls aged 25 years or older, 247 Chinese ancestry cases aged less than 25 years, 670 Chinese ancestry controls aged less than 25 years	NA	5q23.1	AQPEP	rs1366200-G	0.312	1E-6	(EA, less than 25 years)	1.308	[1.174-1.457]	Affymetrix, Illumina [NR] (imputed)	N
1464	chr5	115330926	115330927	rs10044122	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	5q23.1	AQPEP	rs10044122-C	0.387155	1E-9		0.013869454	[0.0094-0.0183] unit increase	Affymetrix [93095623] (imputed)	N
1464	chr5	115331334	115331335	rs885122	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	5q23.1	AQPEP	rs885122-G	0.39453	1E-9		0.013915187	[0.0095-0.0184] unit decrease	Affymetrix [93095623] (imputed)	N
1464	chr5	115331334	115331335	rs885122	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q23.1	NR	rs885122-A	0.603402	6E-11				Affymetrix, Illumina [22063850] (imputed)	N
1464	chr5	115331334	115331335	rs885122	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	5q23.1	NR	rs885122-A	0.605157	5E-13		0.013984	[0.01-0.018] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
1464	chr5	115338731	115338732	rs1560080	34450027	Boer CG	2021-08-24	Cell	Deciphering osteoarthritis genetics across 826,690 individuals from 9 populations.	Osteoarthritis of the hand	20,901 European ancestry cases, 282,881 European ancestry controls	NA	5q23.1		rs1560080-A	0.8252	1E-8		0.91247004	[0.884299543-0.941537995]	Affymetrix, Illumina [NR] (imputed)	N
1465	chr5	115358662	115358663	rs2662482	34337005	Duan H	2021-07-17	Biomed Res Int	A Genome-Wide Association Study of Age-Related Hearing Impairment in Middle- and Old-Aged Chinese Twins.	Hearing function (1 kHz)	131 Chinese ancestry dizygotic twin pairs	NA	5q23.1		rs2662482-?	NR	3E-7				Illumina [1365315]	N
1466	chr5	115512351	115512352	rs1396485	22228203	Aslibekyan S	2012-01-05	Pharmacogenet Genomics	A genome-wide association study of inflammatory biomarker changes in response to fenofibrate treatment in the Genetics of Lipid Lowering Drug and Diet Network.	Inflammatory biomarkers	1,092 European ancestry individuals	NA	5q23.1	COMMD10	rs1396485-?	NR	7E-7	(MCP1-TNF-a pattern prefenofibrate)			Affymetrix [2543887] (imputed)	N
1466	chr5	115540572	115540573	rs7709377	23934736	Yu B	2013-08-11	Genet Epidemiol	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels  (X-11787)	1,260 African American individuals	NA	5q23.1	COMMD10	rs7709377-A		4E-6		0.04	[0.02-0.06] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1466	chr5	115568756	115568757	rs253959	22688191	Bergen SE	2012-06-12	Mol Psychiatry	Genome-wide association study in a Swedish population yields support for greater CNV and MHC involvement in schizophrenia compared with bipolar disorder.	Bipolar disorder and schizophrenia	2,111 European ancestry schizophrenia cases, 836 European ancestry bipolar disorder cases, 2,535 European ancestry controls	NA	5q23.1	COMMD10	rs253959-T	NR	8E-6		1.21	[NR]	Affymetrix [745006]	N
1466	chr5	115596151	115596152	rs4466200	31388106	Sofer T	2019-08-06	Sci Rep	Variants Associated with the Ankle Brachial Index Differ by Hispanic/Latino Ethnic Group: a genome-wide association study in the Hispanic Community Health Study/Study of Latinos.	Ankle-brachial index	1,437 Puerto Rican ancestry individuals	up to 8,527 European ancestry individuals, 2,362 African American individuals, 1,447 Hispanic/Latino individuals	5q23.1	COMMD10	rs4466200-G	0.35	3E-9	(Puerto Rican)	0.024	[0.016-0.032] unit increase	Illumina [27887661] (imputed)	N
1466	chr5	115597047	115597048	rs10043228	24993907	Smolonska J	2014-07-03	Eur Respir J	Common genes underlying asthma and COPD? Genome-wide analysis on the Dutch hypothesis.	Asthma or chronic obstructive pulmonary disease	920 European ancestry Asthma cases, 1,030 European ancestry Chronic obstructive pulmonary disease cases, 4,585 European ancestry controls	461 European ancestry Asthma cases, 118 European ancestry Chronic obstructive pulmonary disease cases, 656 European ancestry controls, 720 European, African American and Hispanic Asthma cases, 1,019 European, African American and Hispanic Chronic obstructive pulmonary disease cases, 19,173 European, African American and Hispanic controls, 1,106 Asthma cases, 1,806 Chronic obstructive pulmonary disease cases, 18,580 controls	5q23.1	COMMD10	rs10043228-T		4E-6		1.32	[NR]	Illumina [1811026]	N
1467	chr5	115626662	115626663	rs11740246	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	5q23.1	NR	rs11740246-A	NR	2E-8		5.659	z score decrease	Affymetrix [10847151] (imputed)	N
1467	chr5	115660071	115660071	rs528574314	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	5q23.1	NR	rs528574314-?	NR	4E-8	(left pars orbitalis)			NR [9227495] (imputed)	N
1467	chr5	115687904	115687905	rs26318	31164008	Mullins N	2019-06-05	Am J Psychiatry	GWAS of Suicide Attempt in Psychiatric Disorders and Association With Major Depression Polygenic Risk Scores.	Suicide attempts in bipolar disorder or schizophrenia	3,264 European ancestry attempters with bipolar disorder, 5,500 European ancestry nonattempters with bipolar disorder, 1,683 European ancestry attempters with schizophrenia, 2,946 European ancestry nonattempters with schizophrenia	NA	5q23.1	NR	rs26318-C	0.010000000000000009	1E-6		1.923077	[1.49-2.5]	NR [at least 8807005] (imputed)	N
1467	chr5	115709155	115709156	rs9327000	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	5q23.1		rs9327000-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1467	chr5	115723409	115723410	rs17139672	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 18)	2,187 European ancestry individuals	NA	5q23.1	NR	rs17139672-G	0.08008	7E-7		0.28	[0.17-0.39] unit decrease	Illumina [10677593] (imputed)	N
1467	chr5	115727837	115727838	rs7702057	19451621	Landers JE	2009-05-18	Proc Natl Acad Sci U S A	Reduced expression of the Kinesin-Associated Protein 3 (KIFAP3) gene increases survival in sporadic amyotrophic lateral sclerosis.	Amyotrophic lateral sclerosis	1,821 cases, 2,258 controls	538 cases, 556 controls	5q23.1	SEMA6A	rs7702057-A	0.03	8E-6	(site of onset)	2.05	[NR]	Illumina [288357]	N
1467	chr5	115733804	115733805	rs7734156	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	5q23.1	NR	rs7734156-C	0.0499571860008917	7E-6	(IGP30)	0.3437	[0.19-0.49] unit decrease	Illumina [~ 2500000] (imputed)	N
1468	chr5	115759489	115759490	rs26595	23740775	Xie G	2013-09-01	Arthritis Rheum	Association of granulomatosis with polyangiitis (Wegener's) with HLA-DPB1*04 and SEMA6A gene variants: evidence from genome-wide analysis.	Wegener's granulomatosis	459 European ancestry cases, 1,503 European ancestry controls	528 European ancestry cases, 1,228 European ancestry controls	5q23.1	SEMA6A	rs26595-T	0.56	2E-8		1.35	[1.22-1.49]	Illumina [287802]	N
1468	chr5	115779972	115779973	rs3733724	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5q23.1	SEMA6A	rs3733724-T	0.097	2E-14	(Semaphorin-6A, SEMA6A.7945.10.3)	0.33	[0.25-0.41] unit increase	Affymetrix [10572788] (imputed)	N
1468	chr5	115807687	115807688	rs258019	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	5q23.1	NA	rs258019-T		2E-8		0.0120232	[0.0079-0.0162] unit increase	Illumina [13288253] (imputed)	N
1468	chr5	115827944	115827945	rs154601	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	5q23.1	NR	rs154601-G	0.059	6E-6	(IFNgamma_STAT4_of_Monocytes)			Illumina [5084123] (imputed)	N
1468	chr5	115834598	115834599	rs258016	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	5q23.1		rs258016-T	0.24	2E-8		5.66	z score increase	Affymetrix [9061022] (imputed)	N
1468	chr5	115834598	115834599	rs258016	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	5q23.1	NR	rs258016-T	0.2205	7E-9				NR [9056863] (imputed)	N
1469	chr5	115888521	115888522	rs7716209	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	5q23.1	NR	rs7716209-?	NR	4E-6				Affymetrix [NR]	N
1469	chr5	115899131	115899132	rs9327007	29855537	Hirata T	2018-05-31	Sci Rep	Japanese GWAS identifies variants for bust-size, dysmenorrhea, and menstrual fever that are eQTLs for relevant protein-coding or long non-coding RNAs.	Menstruation quality of life impact (sleepiness)	1,902 Japanese ancestry female cases, 3,832 Japanese ancestry female controls	1,934 Japanese ancestry female cases, 3,680 Japanese ancestry female controls	5q23.1	NR	rs9327007-G	0.319504311	8E-6		0.13501824	[0.076-0.194] unit decrease	Affymetrix [536506]	N
1469	chr5	115901871	115901872	rs17140139	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 120)	19,670 European ancestry individuals	NA	5q23.1		rs17140139-?	NR	4E-9				NR [9705931] (imputed)	N
1469	chr5	115904409	115904410	rs1027742	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	5q23.1		rs1027742-?	NR	6E-9				NR [~ 8900000] (imputed)	N
1469	chr5	115922143	115922144	rs6897765	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (min-P)	26,502 European ancestry individuals	NA	5q23.1	TAGLN2, IGSF9	rs6897765-?		6E-19				NR [7428630] (imputed)	N
1469	chr5	115922143	115922144	rs6897765	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	5q23.1	NR	rs6897765-?		4E-16				NR [7428630] (imputed)	N
1469	chr5	115922143	115922144	rs6897765	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (min-P)	26,502 European ancestry individuals	NA	5q23.1	NR	rs6897765-?		1E-18				NR [7428630] (imputed)	N
1469	chr5	115922143	115922144	rs6897765	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	5q23.1	SEMA6A	rs6897765-?		5E-10				NR [7428630] (imputed)	N
1469	chr5	115930266	115930267	rs58364462	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	5q23.1		rs58364462-C	0.19	1E-10		6.46	z score increase	Affymetrix [9061022] (imputed)	N
1469	chr5	115939895	115939896	rs17140201	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	5q23.1	SEMA6A	rs17140201-G	0.8280000000000001	1E-8		1.02891		Affymetrix [11880941] (imputed)	N
1469	chr5	115955129	115955130	rs115445722	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels	3,806 African American individuals	NA	5q23.1		rs115445722-?	NR	7E-6		0.3	[0.17-0.43] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1469	chr5	115975655	115975656	rs6898653	22036096	Ramasamy A	2011-11-01	J Allergy Clin Immunol	A genome-wide meta-analysis of genetic variants associated with allergic rhinitis and grass sensitization and their interaction with birth order.	Allergic rhinitis	3,933 European ancestry cases, 8,965 European ancestry controls	NA	5q23.1	SEMA6A	rs6898653-G	0.22	1E-6		1.23	[1.13-1.34]	Affymetrix, Illumina [2217510] (imputed)	N
1470	chr5	116055431	116055432	rs77296444	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	5q23.1	Intergenic	rs77296444-A	NR	2E-7	(between families)	5.183	unit increase	Affymetrix [up to 15107142] (imputed)	N
1470	chr5	116082105	116082106	rs561001583	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	5q23.1	RP11-249M12.2	rs561001583-T	0.0047	3E-6		0.7979	[0.46-1.13] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1470	chr5	116098003	116098004	rs2933639	31586183	Niazi Y	2019-10-04	Mutagenesis	Distinct pathways associated with chromosomal aberration frequency in a cohort exposed to genotoxic compounds compared to general population.	High chromosomal aberration frequency (chromatid type)	345 European and unknown ancestry genotoxic compound-exposed cases, 262 European and unknown ancestry genotoxic compound-exposed controls,  333 European and unknown ancestry unexposed cases, 533 European and unknown ancestry unexposed controls	NA	5q23.1	SEMA6A	rs2933639-?	NR	3E-7		1.53	[NR]	Illumina [> 2600000] (imputed)	N
1470	chr5	116119940	116119940	rs765250782	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid pneumonia vs population)	1,004 European ancestry cases, 680,354 European ancestry controls, 218 Hispanic or Latin American cases, 94,318 Hispanic or Latin American controls, 64 Black or African American cases, 22,412 Black or African American controls	NA	5q23.1		rs765250782-?	NR	4E-6		0.6023419	[0.35-0.86] unit increase	Illumina [9901720] (imputed)	N
1471	chr5	116143515	116143516	rs17373407	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Cerebellum cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	5q23.1	NR	rs17373407-?		6E-6				Illumina [4322238] (imputed)	N
1471	chr5	116151627	116151628	rs9285885	29860282	Scelsi MA	2018-05-30	Brain	Genetic study of multimodal imaging Alzheimer's disease progression score implicates novel loci.	Hippocampal volume	926 European ancestry individuals	NA	5q23.1	NR	rs9285885-?		4E-6	(corrected for APOE4 status)	0.13	[NR] unit increase	Illumina [5137218] (imputed)	N
1471	chr5	116181427	116181428	rs2055376	25017104	Kottyan LC	2014-07-13	Nat Genet	Genome-wide association analysis of eosinophilic esophagitis provides insight into the tissue specificity of this allergic disease.	Eosinophilic esophagitis	657 European ancestry cases, 9,296 European ancestry controls	NA	5q23.1	SEMA6A	rs2055376-A	0.02	7E-8		2.3	[NR]	Illumina [1468075]	N
1471	chr5	116193121	116193122	rs6879338	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q23.1	NR	rs6879338-C	0.01394	6E-9	(AKR1D1)	0.6272	NR unit increase	Illumina [1671387] (imputed)	N
1471	chr5	116212780	116212781	rs6866721	27296613	Salinas YD	2016-06-13	BMC Genet	Multiethnic genome-wide association study identifies ethnic-specific associations with body mass index in Hispanics and African Americans.	Body mass index	1,235 Hispanic individuals, 706 Asian ancestry individuals, 1,549 African American individuals, 2,395 European ancestry individuals	3,379 Hispanic individuals, 6,871 African American individuals	5q23.1	SEMA6A	rs6866721-C		1E-7	(European)	0.76	[0.48-1.04] kg/m2 increase	Affymetrix [up to 871948]	N
1471	chr5	116231255	116231256	rs10519488	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	5q23.1		rs10519488-?	NR	8E-14				NR [~ 8900000] (imputed)	N
1472	chr5	116278052	116278053	rs76861935	29356057	Du Z	2018-01-21	Prostate	Genetic risk of prostate cancer in Ugandan men.	Prostate cancer	560 Ugandan ancestry cases, 480 Ugandan ancestry controls	NA	5q23.1	NR	rs76861935-C	0.86	9E-6		2.02	[1.48-2.75]	Illumina [17125421] (imputed)	N
1472	chr5	116286250	116286251	rs17312027	33831438	Williams JE	2021-04-05	Genomics	Key genetic variants associated with variation of milk oligosaccharides from diverse human populations.	Human milk oligosaccharide concentration (difucosyllacto-N-hexaose) in non-secretors	90 European, Sub-Saharan African, Hispanic or unknown ancestry individuals	NA	5q23.1		rs17312027-?	NR	1E-9				Illumina [1128286]	N
1472	chr5	116374513	116374514	rs113883744	28429243	Dudenkov TM	2017-04-20	Breast Cancer Res Treat	SLCO1B1 polymorphisms and plasma estrone conjugates in postmenopausal women with ER+ breast cancer: genome-wide association studies of the estrone pathway.	Estrone/androstenedione ratio in resected early stage-receptor positive breast cancer	707 European ancestry postmenopausal cases, 52 African ancestry postmenopausal cases, 15 Asian ancestry postmenopausal cases	NA	5q23.1	RPL35AP15	rs113883744-T	0.2103	8E-6		0.2971	[0.17-0.43] unit increase	Illumina [8203257] (imputed)	N
1473	chr5	116419921	116419922	rs4380702	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	5q23.1	NR	rs4380702-?	NR	5E-9				Illumina [7760689] (imputed)	N
1473	chr5	116482626	116482627	rs78009468	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Alanine aminotransferase levels in excessive alcohol consumption	951 individuals	NA	5q23.1	NR	rs78009468-?	NR	2E-6		0.0673	[0.04-0.095] unit decrease	Illumina [~ 7800000] (imputed)	N
1473	chr5	116492832	116492833	rs76314368	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	5q23.1	intergenic	rs76314368-A	0.022	3E-7		4.67	[2.46-8.88]	Illumina [1556551]	N
1473	chr5	116513604	116513605	rs12153048	24024966	Teumer A	2013-08-14	J Clin Periodontol	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (DPAL)	up to 2,501 European ancestry individuals	NA	5q23.1	SEMA6A	rs12153048-G	0.06	2E-6	(Age 20-81 years)	0.3396	[0.20-0.48] unit increase	Affymetrix, Illumina [up to 17585496] (imputed)	N
1473	chr5	116513604	116513605	rs12153048	24024966	Teumer A	2013-08-14	J Clin Periodontol	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (DPAL)	up to 2,501 European ancestry individuals	NA	5q23.1	SEMA6A	rs12153048-G	0.05	6E-6	(Age 20-60 years)	0.3459	[0.20-0.49] unit increase	Affymetrix, Illumina [up to 17585496] (imputed)	N
1474	chr5	116530191	116530192	rs112601042	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q23.1	NR	rs112601042-A	0.0122	9E-15	(COL14A1)	0.2153	NR unit increase	Illumina [1671387] (imputed)	N
1474	chr5	116537249	116537250	rs7712671	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	5q23.1	NR	rs7712671-G	NR	1E-6		1.0526316	[NR]	Illumina [7158791] (imputed)	N
1474	chr5	116543899	116543900	rs2132049	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q23.1	NR	rs2132049-?		8E-9	(Superior fronto-occipital fasciculus)			NR [8955960] (imputed)	N
1474	chr5	116549309	116549310	rs6870246	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q23.1	NR	rs6870246-?		6E-9	(Superior fronto-occipital fasciculus)			NR [8955960] (imputed)	N
1474	chr5	116566835	116566836	rs868720	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	5q23.1	NR	rs868720-C	0.3022	3E-11				NR [9056863] (imputed)	N
1474	chr5	116577730	116577731	rs10037418	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	5q23.1	NR	rs10037418-?		1E-12				NR [7428630] (imputed)	N
1474	chr5	116590607	116590608	rs1494821	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	5q23.1		rs1494821-A	0.37	5E-25		10.33	z score increase	Affymetrix [9061022] (imputed)	N
1474	chr5	116590607	116590608	rs1494821	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure in major depressive disorder-negative individuals	10,701 European ancestry cases, 39,677 European ancestry controls	NA	5q23.1	NR	rs1494821-A	0.362682	3E-6		1.132	[1.08-1.19]	Affymetrix [7791636] (imputed)	N
1474	chr5	116602324	116602325	rs66721933	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	5q23.1	NR	rs66721933-A	0.153	3E-6	(IFNAR2_of_monocytes)			Illumina [5084123] (imputed)	N
1474	chr5	116610206	116610207	rs10066698	34006833	Elvsashagen T	2021-05-18	Nat Commun	The genetic architecture of the human thalamus and its overlap with ten common brain disorders.	Posterior thalamic nuclei volume	30,114 white British ancestry individuals			RPL35AP15	rs10066698-T	0.3285	2E-9		0.0518338	[0.035-0.069] unit increase	Affymetrix [8165723] (imputed)	N
1474	chr5	116617232	116617233	rs2416465	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q23.1	NR	rs2416465-?		4E-8	(Superior fronto-occipital fasciculus)			NR [8955960] (imputed)	N
1474	chr5	116635240	116635241	rs1565890	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	5q23.1		rs1565890-T	0.37	6E-15		7.79	z score increase	Affymetrix [9061022] (imputed)	N
1474	chr5	116635240	116635241	rs1565890	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	5q23.1	NR	rs1565890-T	0.3527	1E-16				NR [9056863] (imputed)	N
1474	chr5	116637138	116637144	rs11279114	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q23.1	NR	rs11279114-?		2E-12	(Superior fronto-occipital fasciculus)			NR [8955960] (imputed)	N
1474	chr5	116637387	116637388	rs1494828	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	5q23.1		rs1494828-C	0.3	3E-10		6.32	z score increase	Affymetrix [9061022] (imputed)	N
1474	chr5	116643980	116643981	rs13155211	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 102)	19,670 European ancestry individuals	NA	5q23.1		rs13155211-?	NR	2E-9				NR [9705931] (imputed)	N
1475	chr5	116654432	116654433	rs77603581	34964454	Gentiluomo M	2021-11-23	Hum Mol Genet	Genome-wide association study of mitochondrial copy number.	Mitochondrial DNA copy number	6,836 European ancestry individuals	NA	5q23.1	NR	rs77603581-C	0.023	4E-7		0.16	[0.1-0.23] unit increase	Illumina [6374524] (imputed)	N
1475	chr5	116658658	116658659	rs7727800	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q23.1	NR	rs7727800-?		1E-10	(Superior fronto-occipital fasciculus)			NR [8955960] (imputed)	N
1475	chr5	116667515	116667516	rs114699399	34074324	Wan JY	2021-06-01	Diabetol Metab Syndr	Genome-wide association analysis of metabolic syndrome quantitative traits in the GENNID multiethnic family study.	Triglyceride levels	281 African American individuals from 73 families, 516 European ancestry individuals from 75 families, 125 Japanese American individuals from 15 families, 598 Mexican American individuals from 96 families	NA	5q23.1	Mir_633, LOC728342	rs114699399-A	0.01	6E-7	(EA)	1.01	[0.62-1.4] unit increase	Illumina [up to 13042663] (imputed)	N
1475	chr5	116703029	116703030	rs10070219	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	5q23.1	NR	rs10070219-?	NR	7E-6	(EA)	0.3481	[0.2-0.5] unit decrease	Illumina [up to 11892802] (imputed)	N
1475	chr5	116750290	116750291	rs1030461	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	5q23.1	LYPD6B	rs1030461-?		2E-11				NR [7428630] (imputed)	N
1476	chr5	116792669	116792670	rs34676687	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota relative abundance (bacterial taxa)	up to 858 Metropolitan French ancestry individuals	NA	5q23.1	NR	rs34676687-?	NR	3E-8	(Blautia_glucerasea)	0.900752	[0.61-1.2] unit increase	Illumina [5293637] (imputed)	N
1476	chr5	116808079	116808080	rs2560504	30450575	Hojfeldt SG	2018-11-18	Br J Haematol	Genetic predisposition to PEG-asparaginase hypersensitivity in children treated according to NOPHO ALL2008.	PEG-asparaginase hypersensitivity without enzyme activity in childhood acute lymphoblastic leukaemia	59 European ancestry cases, 772 European ancestry controls	NA	5q23.1	LINC00992	rs2560504-T	NR	3E-6		9.84	[3.8-25.52]	Illumina [NR]	N
1476	chr5	116809249	116809250	rs138142645	34074324	Wan JY	2021-06-01	Diabetol Metab Syndr	Genome-wide association analysis of metabolic syndrome quantitative traits in the GENNID multiethnic family study.	Triglyceride levels	281 African American individuals from 73 families, 516 European ancestry individuals from 75 families, 125 Japanese American individuals from 15 families, 598 Mexican American individuals from 96 families	NA	5q23.1	LOC728342	rs138142645-G	0.02	6E-8	(EA)	1.08	[0.69-1.47] unit increase	Illumina [up to 13042663] (imputed)	N
1476	chr5	116875362	116875363	rs956882	26242244	Ma Y	2015-08-05	Sci Rep	Association of chromosome 5q21.3 polymorphisms with the exploratory eye movement dysfunction in schizophrenia.	Exploratory eye movement dysfunction in schizophrenia (cognitive search score)	128 Han Chinese ancestry cases	NA		LOC728342	rs956882-?	NR	3E-6		2.952	[1.87-4.03] unit decrease	Illumina [498648]	N
1476	chr5	116878031	116878032	rs186672572	31164008	Mullins N	2019-06-05	Am J Psychiatry	GWAS of Suicide Attempt in Psychiatric Disorders and Association With Major Depression Polygenic Risk Scores.	Suicide attempts in major depressive disorder or bipolar disorder or schizophrenia	1,622 European ancestry attempters with major depressive disorder, 8,786 European ancestry nonattempters with major depressive disorder, 3,264 European ancestry attempters with bipolar disorder, 5,500 European ancestry nonattempters with bipolar disorder, 1,683 European ancestry attempters with schizophrenia, 2,946 European ancestry nonattempters with schizophrenia	NA	5q23.1	NR	rs186672572-C	0.01	2E-6		1.64	1.33-2.00	NR [at least 8482392] (imputed)	N
1476	chr5	116878031	116878032	rs186672572	31164008	Mullins N	2019-06-05	Am J Psychiatry	GWAS of Suicide Attempt in Psychiatric Disorders and Association With Major Depression Polygenic Risk Scores.	Suicide attempts in major depressive disorder or bipolar disorder or schizophrenia	1,622 European ancestry attempters with major depressive disorder, 8,786 European ancestry nonattempters with major depressive disorder, 3,264 European ancestry attempters with bipolar disorder, 5,500 European ancestry nonattempters with bipolar disorder, 1,683 European ancestry attempters with schizophrenia, 2,946 European ancestry nonattempters with schizophrenia	NA	5q23.1	NR	rs186672572-C	0.01	2E-6		1.64	1.33-2.00	NR [at least 8482392] (imputed)	N
1476	chr5	116915831	116915832	rs7719972	31219150	Ekenberg C	2019-06-13	J Infect Dis	Single nucleotide polymorphisms in HLA alleles are associated with HIV-1 viral load in demographically diverse, ART-naive participants from the START trial.	Pre-treatment viral load in HIV-1 infection	1,398 European ancestry individuals, 572 Black individuals, 418 Hispanic individuals, 13 Asian ancestry individuals, 39 individuals	NA	5q23.1	LINC00992	rs7719972-A	0.075	3E-18		0.39	[0.3-0.47] unit decrease	Affymetrix [339439]	N
1477	chr5	116927874	116927875	rs143008449	34074324	Wan JY	2021-06-01	Diabetol Metab Syndr	Genome-wide association analysis of metabolic syndrome quantitative traits in the GENNID multiethnic family study.	Triglyceride levels	281 African American individuals from 73 families, 516 European ancestry individuals from 75 families, 125 Japanese American individuals from 15 families, 598 Mexican American individuals from 96 families	NA	5q23.1	LOC728342, BC044609	rs143008449-A	0.02	6E-8	(EA)	1.08	[0.69-1.47] unit increase	Illumina [up to 13042663] (imputed)	N
1477	chr5	116965614	116965615	rs419359	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Lateral ventricle temporal horn volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	5q23.1	NR	rs419359-?		3E-6				Illumina [4322238] (imputed)	N
1477	chr5	117005976	117005977	rs17411921	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Longevity	up to 482,000 European ancestry individuals	NA	5q23.1	NR	rs17411921-A	NR	3E-7		0.01102	[0.0068-0.0152] unit increase	Illumina [~ 540852]	N
1477	chr5	117011777	117011778	rs192081212	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Periventricular white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	5q23.1	intergenic	rs192081212-A	0.9855	4E-6		0.1685	[0.097-0.24] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1477	chr5	117033613	117033613	rs201394051	28753643	Yeo A	2017-07-28	PLoS One	Pharmacogenetic meta-analysis of baseline risk factors, pharmacodynamic, efficacy and tolerability endpoints from two large global cardiovascular outcomes trials for darapladib.	Moderate or severe diarrhoea in darapladib-treated cardiovascular disease (time to event)	212 European ancestry cases	NA	5q23.1	intergenic	rs201394051-AAT	0.0442	2E-8		2.72	[1.91-3.86]	Affymetrix, Illumina [9334585] (imputed)	N
1478	chr5	117048724	117048725	rs1830169	29489655	Liu X	2018-03-01	Medicine (Baltimore)	Genome-wide association study of maternal genetic effects and parent-of-origin effects on food allergy.	Peanut allergy (maternal genetic effects)	301 European ancestry complete and incomplete trios	NA	5q23.1	LINC00992, LOC100129526	rs1830169-?	NR	4E-6				Illumina [NR]	N
1478	chr5	117110710	117110711	rs4509059	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	5q23.1	NA	rs4509059-G	0.3671	3E-8	(Female)	1.0438414	[1.03-1.06]	Affymetrix, Illumina [NR] (imputed)	N
1478	chr5	117114516	117114517	rs140260076	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	5q23.1	Intergenic	rs140260076-T	0.017	5E-7		0.0731316	[0.045-0.102] unit decrease	Illumina [13519193] (imputed)	N
1479	chr5	117211217	117211218	rs145337816	33168928	Wenric S	2020-11-10	Pharmacogenomics J	Rapid response to the alpha-1 adrenergic agent phenylephrine in the perioperative period is impacted by genomics and ancestry.	Rapid response to perioperative phenylephrine (change in systolic blood pressure)	1,082 African American individuals, 1,112 European ancestry individuals, 1,505 Hispanic individuals	NA	5q23.1	LINC02147	rs145337816-?		2E-8		0.92	[0.61-1.23] unit increase	Illumina [42246687] (imputed)	N
1479	chr5	117211527	117211528	rs147753900	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Diastolic blood pressure change trajectory	5,304 African American individuals, 13,137 European ancestry individuals, 1,317 Hispanic individuals, 1,439 admixed individuals, 703 Chinese ancestry individuals	6,500 African American individuals, 2,451 European ancestry individuals, 2,869 Hispanic individuals	5q23.1	NR	rs147753900-T	0.1198	5E-7		0.0986	[0.06-0.137] mmHg decrease	Affymetrix, Illumina [NR] (imputed)	N
1479	chr5	117212922	117212923	rs6887429	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	5q23.1	Intergenic	rs6887429-A	0.4984	4E-9	(MTAG)	0.0097	[0.0066-0.0128] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1479	chr5	117219254	117219255	rs62378044	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	5q23.1	DTWD2	rs62378044-A	0.51	4E-8		0.0065	[0.0041-0.0089] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
1479	chr5	117241096	117241097	rs149292565	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	5q23.1	Intergenic	rs149292565-G	NR	3E-6		0.0742508	[0.043-0.105] unit decrease	Illumina [13519193] (imputed)	N
1479	chr5	117244013	117244014	rs6897293	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Alcohol consumption x experiences in childhood (felt loved by family member) interaction	41,648 European ancestry individuals	NA	5q23.1		rs6897293-?	NR	3E-8		1.797	[1.16-2.43] unit decrease	Affymetrix [NR] (imputed)	N
1479	chr5	117251564	117251565	rs17143267	28394258	Wild PS	2017-04-10	J Clin Invest	Large-scale genome-wide analysis identifies genetic variants associated with cardiac structure and function.	Left atrial antero-posterior diameter	30,201 European ancestry individuals	NA	5q23.1	NR	rs17143267-T	0.1601	9E-6		0.0228	[0.013-0.033] unit increase	Affymetrix, Illumina [at least 283291] (imputed)	N
1479	chr5	117270988	117270989	rs35284775	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	5q23.1	Intergenic	rs35284775-A	0.692	1E-8	(MTAG)	0.0081	[0.0054-0.0108] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1480	chr5	117337752	117337753	rs13166814	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Subcutaneous adipose tissue	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	5q23.1	DTWD2	rs13166814-A	0.16	5E-7	(men)			Affymetrix, Illumina [2500000] (imputed)	N
1480	chr5	117409247	117409248	rs62369989	27639821	Scherag A	2016-09-15	EBioMedicine	Genetic Factors of the Disease Course after Sepsis: A Genome-Wide Study for 28Day Mortality.	Mortality in sepsis	149 European ancestry cases, 591 European ancestry controls	up to 2,534 individuals	5q23.1	LOC102467224	rs62369989-G	0.26	8E-6	(European)	2.1		Illumina [7993459] (imputed)	N
1481	chr5	117570898	117570899	rs11742447	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5q23.1	DMXL1	rs11742447-?	NR	1E-6	(betaine)	0.24599823	[0.15-0.35] unit increase	Affymetrix [at least 2500000] (imputed)	N
1482	chr5	117629950	117629951	rs77152330	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	5q23.1	NR	rs77152330-A	NR	7E-6	(GEE model)	1.1042	[0.62-1.58] unit decrease	NR [NR] (imputed)	N
1482	chr5	117678361	117678362	rs6896245	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	5q23.1		rs6896245-T	0.33	4E-9		5.88	z score increase	Affymetrix [9061022] (imputed)	N
1482	chr5	117698478	117698479	rs7701305	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric bone mineral content (radius)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	5q23.1	NR	rs7701305-G	0.435	6E-6	(Males)	0.231064	[0.13-0.33] unit increase	Illumina [~ 6600000] (imputed)	N
1483	chr5	117734464	117734465	rs61287758	29346644	Yan Q	2018-01-15	Hum Mol Genet	Genome-wide Analysis of Disease Progression in Age-related Macular Degeneration.	Disease progression in age-related macular degeneration (adjusted for baseline)	1,105 progressed eyes and 3,912 non-progressed eyes from 2,721 European ancestry individuals	NA	5q23.1	LOC101927280	rs61287758-A	0.05	5E-6		1.55		Illumina [8974355] (imputed)	N
1483	chr5	117765732	117765733	rs139018151	32438682	Mateos MK	2020-05-19	Cancers (Basel)	Genome-Wide Association Meta-Analysis of Single-Nucleotide Polymorphisms and Symptomatic Venous Thromboembolism during Therapy for Acute Lymphoblastic Leukemia and Lymphoma in Caucasian Children.	Childhood ALL/LBL (acute lymphoblastic leukemia/lymphoblastic lymphoma) treatment-related venous thromboembolism	92 European ancestry cases, 1,481 European ancestry controls	NA	5q23.1	LINC02208	rs139018151-?		2E-6		20.0	[5.56-50]	Illumina [NR] (imputed)	N
1483	chr5	117825651	117825652	rs80116460	31504550	Bradfield JP	2019-07-05	Hum Mol Genet	A Trans-ancestral Meta-Analysis of Genome-Wide Association Studies Reveals Loci Associated with Childhood Obesity.	Childhood obesity	8,613 European ancestry cases, 3,213 African American cases, 69 Moroccan ancestry cases, 986 Hispanic/Latino cases, 124 East Asian ancestry cases, 12,696 European ancestry controls, 1,392 African American controls, 64 Moroccan ancestry controls, 993 Hispanic/Latino controls, 454 East Asian ancestry controls	NA	5q23.1	NR	rs80116460-T	NR	3E-6	(EA)	0.2703	[0.16-0.38] unit decrease	Affymetrix, Illumina [up to 15123508] (imputed)	N
1484	chr5	117876970	117876971	rs146724961	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip	15 Asian ancestry cases, 13 European ancestry cases, 15 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	5q23.1	NR	rs146724961-?	NR	6E-6		3.05	[2.29-4.07]	Illumina [539000] (imputed)	N
1484	chr5	117944804	117944805	rs6877715	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	5q23.1	NR	rs6877715-?	NR	3E-8				Affymetrix [NR]	N
1485	chr5	117982045	117982046	rs2914908	29206233	Shendre A	2017-12-04	PLoS One	Genome-wide admixture and association study of subclinical atherosclerosis in the Women's Interagency HIV Study (WIHS).	Common carotid intima-media thickness in HIV infection	682 Black non-Hispanic HIV-positive women	NA	5q23.1	LOC102467225, DTWD2	rs2914908-G	NR	7E-6		0.01357	[NR] unit decrease	Illumina [1124301]	N
1485	chr5	117982045	117982046	rs2914908	29206233	Shendre A	2017-12-04	PLoS One	Genome-wide admixture and association study of subclinical atherosclerosis in the Women's Interagency HIV Study (WIHS).	Common carotid intima-media thickness	682 Black non-Hispanic HIV-positive women, 288 Black non-Hispanic HIV-negative women	NA	5q23.1	LOC102467225, DTWD2	rs2914908-G	NR	3E-6		0.01169	[NR] unit decrease	Illumina [1124301]	N
1485	chr5	117982045	117982046	rs2914908	29185836	Chen MH	2017-11-29	Platelets	Exome-chip meta-analysis identifies association between variation in ANKRD26 and platelet aggregation.	Platelet aggregation	3,664 European ancestry individuals, 549 Old Order Amish (founder/genetic isolate) individuals	1,184 European ancestry individuals, 613 African American individuals	5q23.1	RPL11-2N5.2	rs2914908-T	0.49	8E-7	(ephinephrine low 1)	0.12	[0.073-0.167] unit increase	Illumina [129094]	N
1485	chr5	117983611	117983612	rs2972219	24529757	Xie T	2014-01-17	Neurobiol Aging	Genome-wide association study combining pathway analysis for typical sporadic amyotrophic lateral sclerosis in Chinese Han populations.	Amyotrophic lateral sclerosis (sporadic)	250 Han Chinese ancestry cases, 250 Han Chinese ancestry controls	NA	5q23.1	LOC100287135	rs2972219-?		2E-6				Illumina [859311]	N
1485	chr5	118009471	118009472	rs2376682	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	5q23.1	LOC100130968, DTWD2	rs2376682-?	0.779	3E-6		4.166667	[2.22-8.33]	Illumina [1556551]	N
1485	chr5	118045915	118045916	rs10069027	29206233	Shendre A	2017-12-04	PLoS One	Genome-wide admixture and association study of subclinical atherosclerosis in the Women's Interagency HIV Study (WIHS).	Common carotid intima-media thickness	682 Black non-Hispanic HIV-positive women, 288 Black non-Hispanic HIV-negative women	NA	5q23.1	LOC102467225, DTWD2	rs10069027-T	NR	6E-6		0.01201	[NR] unit decrease	Illumina [1124301]	N
1486	chr5	118125236	118125237	rs6595162	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (min-P)	26,502 European ancestry individuals	NA	5q23.1	VANGL2	rs6595162-?		3E-9				NR [7428630] (imputed)	N
1486	chr5	118125236	118125237	rs6595162	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (min-P)	26,502 European ancestry individuals	NA	5q23.1	NR	rs6595162-?		1E-8				NR [7428630] (imputed)	N
1486	chr5	118132896	118132897	rs421765	33693626	Jamieson SE	2021-03-09	Clin Infect Dis	Common and rare genetic variants that could contribute to severe otitis media in an Australian Aboriginal population.	Otitis media	21 Martu ancestry cases, 370 Martu ancestry controls	NA	5q23.1		rs421765-G	0.21	7E-6				Illumina [6724284] (imputed)	N
1486	chr5	118217473	118217474	rs7737716	28247064	Deming Y	2017-02-28	Acta Neuropathol	Genome-wide association study identifies four novel loci associated with Alzheimer's endophenotypes and disease modifiers.	Cerebrospinal T-tau levels	3,146 individuals	NA	5q23.1	DTWD2	rs7737716-T	0.138	2E-6		0.041	[0.023-0.059] unit increase	Illumina [7358575] (imputed)	N
1486	chr5	118217473	118217474	rs7737716	28247064	Deming Y	2017-02-28	Acta Neuropathol	Genome-wide association study identifies four novel loci associated with Alzheimer's endophenotypes and disease modifiers.	Cerebrospinal P-tau181p levels	3,146 individuals	NA	5q23.1	DTWD2	rs7737716-T	0.138	8E-6		0.036	[0.02-0.052] unit increase	Illumina [7358575] (imputed)	N
1487	chr5	118248352	118248353	rs56708620	31358989	Gelernter J	2019-07-29	Nat Neurosci	Genome-wide association study of post-traumatic stress disorder reexperiencing symptoms in >165,000 US veterans.	Post-traumatic stress disorder (re-experiencing symptoms)	146,660 European ancestry individuals, 19,983 African American individuals	117,900 European ancestry individuals	5q23.1	NR	rs56708620-?	NR	4E-6	(AA)	0.290068	[NR] unit increase	Affymetrix [49134253] (imputed)	N
1487	chr5	118306578	118306579	rs2442120	28334935	Raffield LM	2017-05-15	Hum Mol Genet	Genome-wide association study of iron traits and relation to diabetes in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL): potential genomic intersection of iron and glucose regulation?	Iron status biomarkers (transferrin saturation)	12,589 Hispanic/Latino individuals	NA	5q23.1	DTWD2	rs2442120-A	NR	5E-8		0.284	[0.18-0.39] unit increase	Illumina [27700000] (imputed)	N
1487	chr5	118306578	118306579	rs2442120	28334935	Raffield LM	2017-05-15	Hum Mol Genet	Genome-wide association study of iron traits and relation to diabetes in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL): potential genomic intersection of iron and glucose regulation?	Iron status biomarkers (iron levels)	12,580 Hispanic/Latino individuals	NA	5q23.1	DTWD2	rs2442120-A	NR	1E-7		0.452	[0.29-0.62] unit increase	Illumina [27700000] (imputed)	N
1487	chr5	118314866	118314867	rs558806507	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Hyperopia	10,828 European ancestry hyperopia cases, 21,416 European ancestry emmetropia controls	NA	5q23.1	NR	rs558806507-?	NR	3E-7		0.502906	[0.31-0.69] unit increase	NR [13958389] (imputed)	N
1487	chr5	118356414	118356415	rs111649495	22952603	Hart AB	2012-08-28	PLoS One	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 10 individuals	NA	5q23.1	intergenic	rs111649495-?	NR	2E-6	(SF4)			Affymetrix [5476100] (imputed)	N
1488	chr5	118435126	118435127	rs116348108	23535033	Sherva R	2013-03-24	Alzheimers Dement	Genome-wide association study of the rate of cognitive decline in Alzheimer's disease.	Alzheimer's disease (cognitive decline)	303 European ancestry cases		5q23.1	DMXL1	rs116348108-?	0.04	9E-7		0.28	unit decrease	Illumina [NR] (imputed)	N
1488	chr5	118461559	118461560	rs34904684	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	5q23.1	DMXL1	rs34904684-G	0.260765	4E-10		0.015783926	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1488	chr5	118461559	118461560	rs34904684	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	5q23.1	NR	rs34904684-G	0.260446	2E-11		0.014735	[0.01-0.019] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
1489	chr5	118516912	118516913	rs7727906	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	5q23.1		rs7727906-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1489	chr5	118576854	118576855	rs79966641	32641180	Steffens DC	2020-07-09	Int Psychogeriatr	Genome-wide screen to identify genetic loci associated with cognitive decline in late-life depression.	Cognitive impairment in depression	31 European ancestry cases, 111 European ancestry controls	NA	5q23.1	DMXL1	rs79966641-?		5E-6				Illumina [3730665] (imputed)	N
1489	chr5	118581717	118581718	rs17442317	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	5q23.1	NR	rs17442317-G	0.24987	9E-14		0.015678	[0.012-0.02] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
1489	chr5	118591097	118591098	rs7356611	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	5q23.1		rs7356611-A	NR	3E-9		0.0166	[0.011-0.022] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
1489	chr5	118591097	118591098	rs7356611	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	5q23.1	AC027320.1	rs7356611-A	0.225624	1E-10		0.0166753	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1489	chr5	118605022	118605023	rs1004531	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	5q23.1	TNFAIP8	rs1004531-T	0.678324	6E-12		0.016538354	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1489	chr5	118605022	118605023	rs1004531	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	5q23.1	TNFAIP8	rs1004531-T	0.678318	3E-10		0.015261466	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1489	chr5	118605022	118605023	rs1004531	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q23.1	NR	rs1004531-T	0.711606	5E-13				Affymetrix, Illumina [24246363] (imputed)	N
1489	chr5	118605022	118605023	rs1004531	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	5q23.1		rs1004531-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1490	chr5	118627270	118627271	rs1966479	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q23.1	NR	rs1966479-G	0.693756	5E-11				Affymetrix, Illumina [23114412] (imputed)	N
1490	chr5	118627270	118627271	rs1966479	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	5q23.1	NR	rs1966479-G	0.660217	1E-12		0.014401	[0.01-0.018] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
1490	chr5	118641299	118641300	rs1032859	25130324	Cai DC	2014-08-29	Genes Brain Behav	A genome-wide search for quantitative trait loci affecting the cortical surface area and thickness of Heschl's gyrus.	Heschl's gyrus morphology	1,778 European ancestry individuals, 1,276 individuals	NA	5q23.1	TNFAIP8	rs1032859-A	0.86	6E-6	(Left HG area)	15.54	unit decrease	Affymetrix, Illumina [4103035] (imputed)	N
1490	chr5	118650963	118650964	rs1973531	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	5q23.1	TNFAIP8	rs1973531-A	NR	2E-9		0.0183204	[0.012-0.024] unit decrease	Affymetrix [319769] (imputed)	N
1490	chr5	118650963	118650964	rs1973531	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	5q23.1	TNFAIP8	rs1973531-A	NR	5E-9		0.0178947	[0.012-0.024] unit decrease	Affymetrix [319769] (imputed)	N
1490	chr5	118652573	118652574	rs7718395	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	5q23.1	NR	rs7718395-G	0.319522	2E-9		0.012632	[0.0085-0.0167] unit increase	Affymetrix [16668957] (imputed)	N
1490	chr5	118659578	118659579	rs6888116	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Phoneme awareness	3,093 European ancestry individuals	NA	5q23.1	Intergenic	rs6888116-A	0.35824	7E-6		0.136351	[0.077-0.196] unit increase	Illumina [6969139] (imputed)	N
1490	chr5	118661881	118661882	rs2052473	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	5q23.1	TNFAIP8	rs2052473-G	NR	2E-8		0.0181736	[0.012-0.025] unit increase	Affymetrix [319769] (imputed)	N
1490	chr5	118661881	118661882	rs2052473	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	5q23.1	TNFAIP8	rs2052473-G	NR	2E-8		0.0181861	[0.012-0.025] unit increase	Affymetrix [319769] (imputed)	N
1490	chr5	118665157	118665158	rs4392658	33109212	Chang H	2020-10-28	BMC Med	Genetic architecture of cardiometabolic risks in people living with HIV.	HDL cholesterol levels in HIV infection	3,095 European ancestry individuals, 3,189 African American individuals	NA	5q23.1	TNFAIP8	rs4392658-?		1E-5	(EA)	0.20990263	[0.12-0.3] unit increase	Illumina [13620258] (imputed)	N
1490	chr5	118668049	118668050	rs986649	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	5q23.1		rs986649-?	NR	4E-9		0.0128637	[0.0086-0.0171] unit increase	NR [6912294] (imputed)	N
1490	chr5	118669303	118669304	rs56329027	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	5q23.1		rs56329027-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1490	chr5	118669303	118669304	rs56329027	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	5q23.1		rs56329027-C	0.729	9E-13				Affymetrix [10369434] (imputed)	N
1490	chr5	118677092	118677093	rs250303	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	5q23.1		rs250303-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1490	chr5	118677339	118677340	rs250302	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	5q23.1	NR	rs250302-?	NR	2E-13				Affymetrix [~ 8270000] (imputed)	N
1490	chr5	118682788	118682789	rs6878879	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	5q23.1	TNFAIP8	rs6878879-T	NR	2E-14		0.0267866	[0.02-0.034] unit decrease	Affymetrix [319769] (imputed)	N
1490	chr5	118682788	118682789	rs6878879	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	5q23.1	TNFAIP8	rs6878879-T	NR	4E-14		0.0265684	[0.02-0.033] unit decrease	Affymetrix [319769] (imputed)	N
1490	chr5	118683064	118683065	rs6864305	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	5q23.1	TNFAIP8	rs6864305-C	NR	6E-17		0.0256532	[0.02-0.032] unit decrease	Affymetrix [319769] (imputed)	N
1490	chr5	118683064	118683065	rs6864305	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	5q23.1	TNFAIP8	rs6864305-C	NR	7E-17		0.0256027	[0.02-0.032] unit decrease	Affymetrix [319769] (imputed)	N
1490	chr5	118684296	118684297	rs250308	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	5q23.1		rs250308-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1490	chr5	118684296	118684297	rs250308	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	5q23.1	TNFAIP8	rs250308-T	0.37	4E-9		1.031	[1.02-1.04]	Affymetrix, Illumina [8307659] (imputed)	N
1490	chr5	118685884	118685885	rs1396609	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	5q23.1	NR	rs1396609-G	0.309989	4E-10		0.0208488	[0.014-0.027] unit increase	NR [19129689] (imputed)	N
1490	chr5	118686088	118686089	rs6595184	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	5q23.1	TNFAIP8	rs6595184-C	NR	1E-8		0.0353777	[0.023-0.047] unit increase	Affymetrix [321788] (imputed)	N
1490	chr5	118686862	118686862	rs144137123	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	5q23.1	TNFAIP8	rs144137123-CA	NR	3E-8		0.0322135	[0.021-0.044] unit decrease	Affymetrix [319769] (imputed)	N
1490	chr5	118686895	118686896	rs4895368	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	5q23.1	NR	rs4895368-T	NR	4E-6	(GEE model)	0.87692	[0.5-1.25] unit decrease	NR [NR] (imputed)	N
1490	chr5	118687374	118687375	rs6869512	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	5q23.1	TNFAIP8	rs6869512-C	NR	5E-15		0.025042	[0.019-0.031] unit increase	Affymetrix [321016] (imputed)	N
1490	chr5	118688118	118688118	rs75767453	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	5q23.1	TNFAIP8	rs75767453-GA	NR	2E-8		0.0309005	[0.02-0.042] unit increase	Affymetrix [321016] (imputed)	N
1490	chr5	118690780	118690781	rs3813308	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Asthma	38,369 European ancestry cases, 411,131 European ancestry controls, 13,015 East Asian ancestry cases, 162,933 East Asian ancestry controls	NA	5q23.1		rs3813308-G	NR	2E-8		0.0402	[0.026-0.054] unit increase	Affymetrix, Illumina [25837673] (imputed)	N
1490	chr5	118690780	118690781	rs3813308	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	5q23.1	TNFAIP8	rs3813308-G	0.43	4E-12				NR [> 9500000] (imputed)	N
1490	chr5	118690780	118690781	rs3813308	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	5q23.1	TNFAIP8	rs3813308-G	0.433763	4E-11		1.0407587	[1.02849919996135-1.05316434707474]	NR [9572556] (imputed)	N
1490	chr5	118690780	118690781	rs3813308	31959851	Olafsdottir TA	2020-01-20	Nat Commun	Eighty-eight variants highlight the role of T cell regulation and airway remodeling in asthma pathogenesis.	Asthma	16,247 European ancestry cases, 346,486 European ancestry controls, 52,942 cases, 355,713 controls	NA	5q23.1	TNFAIP8, HSD17B4, DMXL1, MIR5706, FAM170A, DTWD2	rs3813308-G	0.43538	3E-11		1.04302	[1.03-1.06]	Affymetrix [32463443] (imputed)	N
1490	chr5	118690780	118690781	rs3813308	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	5q23.1	TNFAIP8	rs3813308-G	0.435145	6E-10		1.0392152	[1.03-1.05]	Affymetrix [8274727] (imputed)	N
1490	chr5	118690780	118690781	rs3813308	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	5q23.1	NR	rs3813308-G	0.4352	2E-10		1.039	[1.027-1.051]	Affymetrix [15688218] (imputed)	N
1490	chr5	118690780	118690781	rs3813308	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	5q23.1	TNFAIP8	rs3813308-G	0.4352	2E-9				Affymetrix [15688218] (imputed)	N
1490	chr5	118690780	118690781	rs3813308	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic disease (asthma, hay fever or eczema)	106,772 European ancestry cases, 239,773 European ancestry controls	83,335 cases, 34,934 controls	5q23.1	NR	rs3813308-G	0.4352	1E-11		1.038	[1.028-1.049]	Affymetrix [15688218] (imputed)	N
1490	chr5	118690780	118690781	rs3813308	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Respiratory diseases	approximately 459,000 European ancestry individuals	NA	5q23.1		rs3813308-?	NR	8E-9				NR [~ 8900000] (imputed)	N
1490	chr5	118690997	118690998	rs3813309	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	5q23.1	TNFAIP8	rs3813309-A	NR	3E-17		0.025965	[0.02-0.032] unit increase	Affymetrix [319769] (imputed)	N
1490	chr5	118690997	118690998	rs3813309	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	5q23.1	TNFAIP8	rs3813309-A	NR	2E-17		0.0262127	[0.02-0.032] unit increase	Affymetrix [319769] (imputed)	N
1490	chr5	118690997	118690998	rs3813309	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	5q23.1	TNFAIP8	rs3813309-A	NR	5E-9		0.0180986	[0.012-0.024] unit increase	Affymetrix [321114] (imputed)	N
1490	chr5	118692217	118692218	rs1509141	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	5q23.1		rs1509141-?	NR	4E-17				NR [~ 8900000] (imputed)	N
1490	chr5	118692464	118692465	rs1509142	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	5q23.1	TNFAIP8	rs1509142-A	NR	9E-14		0.02379	[0.018-0.03] unit decrease	Affymetrix [321788] (imputed)	N
1490	chr5	118695050	118695051	rs73239278	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	5q23.1		rs73239278-A	NR	2E-23		0.0276	[0.022-0.033] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
1490	chr5	118695578	118695579	rs73239280	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q23.1	NR	rs73239280-A	0.188705	7E-39				Affymetrix, Illumina [23472807] (imputed)	N
1490	chr5	118695578	118695579	rs73239280	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	5q23.1	NR	rs73239280-A	0.203256	5E-41		0.031522	[0.027-0.036] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1490	chr5	118696928	118696928	rs556848661	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	5q23.1	TNFAIP8	rs556848661-GC	0.203976	2E-9		0.016422475	[0.011-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1490	chr5	118701072	118701073	rs6897359	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	5q23.1	TNFAIP8	rs6897359-T	NR	2E-21		0.0317423	[0.025-0.038] unit increase	Affymetrix [321788] (imputed)	N
1490	chr5	118703661	118703662	rs32658	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	5q23.1	TNFAIP8	rs32658-T	NR	3E-8		1.0631511	NR	Affymetrix, Illumina [8278136] (imputed)	N
1490	chr5	118711833	118711834	rs12234017	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	5q23.1	TNFAIP8	rs12234017-G	NR	5E-27		0.0350871	[0.029-0.041] unit decrease	Affymetrix [319769] (imputed)	N
1490	chr5	118711833	118711834	rs12234017	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	5q23.1	TNFAIP8	rs12234017-G	NR	6E-27		0.0350794	[0.029-0.041] unit decrease	Affymetrix [319769] (imputed)	N
1490	chr5	118711833	118711834	rs12234017	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	5q23.1	TNFAIP8	rs12234017-G	NR	1E-10		0.0212002	[0.015-0.028] unit decrease	Affymetrix [321114] (imputed)	N
1490	chr5	118711833	118711834	rs12234017	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	5q23.1	TNFAIP8	rs12234017-G	NR	1E-10		0.0211688	[0.015-0.028] unit decrease	Affymetrix [321169] (imputed)	N
1490	chr5	118713101	118713101	rs571167884	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	5q23.1	TNFAIP8	rs571167884-TA	0.216064	2E-30		0.031143717	[0.026-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
1490	chr5	118713456	118713456	rs5870855	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	5q23.1		rs5870855-AT	NR	3E-18		0.0211	[0.016-0.026] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
1490	chr5	118713456	118713456	rs5870855	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	5q23.1		rs5870855-AT	NR	4E-11		0.0161	[0.011-0.021] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
1490	chr5	118713456	118713456	rs5870855	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	5q23.1	TNFAIP8	rs5870855-?	NR	4E-13		0.0216	[0.016-0.027] unit decrease	Affymetrix [5701386] (imputed)	N
1490	chr5	118714991	118714992	rs10077888	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	5q23.1	TNFAIP8	rs10077888-C	NR	1E-13		0.0225378	[0.017-0.029] unit increase	Affymetrix [319769] (imputed)	N
1490	chr5	118714991	118714992	rs10077888	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	5q23.1	TNFAIP8	rs10077888-C	NR	1E-13		0.0226105	[0.017-0.029] unit increase	Affymetrix [319769] (imputed)	N
1490	chr5	118714991	118714992	rs10077888	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	5q23.1	TNFAIP8	rs10077888-C	NR	5E-12		0.0218326	[0.016-0.028] unit decrease	Affymetrix [321788] (imputed)	N
1490	chr5	118715274	118715275	rs924623	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	5q23.1	TNFAIP8	rs924623-G	NR	3E-8		0.016918	[0.011-0.023] unit decrease	Affymetrix [321016] (imputed)	N
1490	chr5	118726636	118726637	rs79272926	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	5q23.1	TNFAIP8	rs79272926-A	NR	2E-10		0.0225497	[0.016-0.029] unit increase	Affymetrix [321788] (imputed)	N
1490	chr5	118726636	118726637	rs79272926	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	5q23.1	NR	rs79272926-A	0.221625	1E-23		0.022316	[0.018-0.027] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1490	chr5	118726661	118726662	rs9764678	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	5q23.1	TNFAIP8	rs9764678-C	NR	6E-16		0.0257099	[0.019-0.032] unit increase	Affymetrix [321016] (imputed)	N
1490	chr5	118726661	118726662	rs9764678	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Triglycerides	429,011 European ancestry individuals	NA	5q23.1		rs9764678-C	0.27	7E-22		0.021	mmol/L decrease	NR [NR] (imputed)	N
1490	chr5	118726661	118726662	rs9764678	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	5q23.1		rs9764678-C	0.27	8E-23				NR [NR] (imputed)	N
1490	chr5	118726661	118726662	rs9764678	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	High density lipoprotein cholesterol levels	392,965 European ancestry individuals	NA	5q23.1		rs9764678-C	0.27	2E-14		0.016	mmol/L increase	NR [NR] (imputed)	N
1490	chr5	118726661	118726662	rs9764678	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	5q23.1		rs9764678-C	0.27	3E-10		0.01	% increase	NR [NR] (imputed)	N
1490	chr5	118729285	118729286	rs1045241	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	5q23.1	TNFAIP8	rs1045241-C	0.729057	2E-20		0.0208107	[0.016-0.025] unit increase	Affymetrix [NR] (imputed)	N
1490	chr5	118729285	118729286	rs1045241	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	5q23.1	TNFAIP8	rs1045241-C	0.728748	2E-14		0.0164773	[0.012-0.021] unit decrease	Affymetrix [NR] (imputed)	N
1490	chr5	118729285	118729286	rs1045241	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	5q23.1	TNFAIP8	rs1045241-C	0.728786	2E-8		0.0124055	[0.0081-0.0168] unit decrease	Affymetrix [NR] (imputed)	N
1490	chr5	118729285	118729286	rs1045241	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	5q23.1	NR	rs1045241-C	0.72	2E-19		0.018	[0.014-0.022] unit increase	Affymetrix [2446094] (imputed)	N
1490	chr5	118729285	118729286	rs1045241	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	5q23.1	NR	rs1045241-C	0.72	5E-8				Affymetrix [2446094] (imputed)	N
1490	chr5	118729285	118729286	rs1045241	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	5q23.1	TNFAIP8	rs1045241-T	0.2937	6E-11		0.0154	[0.011-0.02] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1490	chr5	118729285	118729286	rs1045241	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	5q23.1	TNFAIP8	rs1045241-T	0.2937	9E-9		0.0136	[0.0089-0.0183] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1490	chr5	118729285	118729286	rs1045241	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	5q23.1	NR	rs1045241-T	0.2817	4E-22		0.0185	[0.015-0.022] unit decrease	NR [~ 27400000] (imputed)	N
1490	chr5	118729285	118729286	rs1045241	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	5q23.1	NA	rs1045241-T	0.2816	9E-11		0.0123	[0.0086-0.016] unit decrease	NR [~ 27400000] (imputed)	N
1490	chr5	118729285	118729286	rs1045241	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	5q23.1	NR	rs1045241-T	0.2816	9E-11		0.0123	[0.0086-0.016] unit decrease	NR [~ 27400000] (imputed)	N
1490	chr5	118729285	118729286	rs1045241	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	265,204 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	5q23.1	NR	rs1045241-C	NR	2E-8		0.019	unit increase	Affymetrix [at least 7091467] (imputed)	N
1490	chr5	118729285	118729286	rs1045241	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	265,204 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	5q23.1	NR	rs1045241-C	NR	2E-6		0.015	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1490	chr5	118729285	118729286	rs1045241	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	5q23.1	TNFAIP8, HSD17B4	rs1045241-T	0.2896	3E-9	(women)	0.0301	[0.02-0.04] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1490	chr5	118729285	118729286	rs1045241	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex x age interaction (4df test)	up to 43,776 European ancestry men aged <50, up to 50,526 European ancestry women aged <50, up to 69,944 European ancestry men aged >50, up to 88,129 European ancestry women aged >50	NA	5q23.1	TNFAIP8, DTWD2, MIR1244-1, MIR1244-3, MIR1244-2, DMXL1, HSD17B4, FAM170A	rs1045241-C	0.71	9E-9				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1490	chr5	118729285	118729286	rs1045241	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex interaction	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	5q23.1	TNFAIP8	rs1045241-C	0.71	3E-6				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1490	chr5	118729285	118729286	rs1045241	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI (age >50)	up to 69,944 European ancestry men, up to 88,129 European ancestry women	NA	5q23.1	TNFAIP8, DTWD2, MIR1244-1, MIR1244-3, MIR1244-2, DMXL1, HSD17B4, FAM170A	rs1045241-C	0.71	9E-7	(women)	0.0312	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1490	chr5	118729285	118729286	rs1045241	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	5q23.1	TNFAIP8, DTWD2, MIR1244-1, MIR1244-3, MIR1244-2, DMXL1, HSD17B4, FAM170A	rs1045241-C	0.71	2E-6		0.0312	units increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1490	chr5	118729285	118729286	rs1045241	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	5q23.1	TNFAIP8, HSD17B4	rs1045241-C	0.7141	7E-12	(EA, women)	0.0345	[0.025-0.044] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1490	chr5	118729285	118729286	rs1045241	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	5q23.1	TNFAIP8, HSD17B4	rs1045241-C	0.7114	4E-7	(EA)	0.0189	[0.012-0.026] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1490	chr5	118729285	118729286	rs1045241	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	5q23.1	TNFAIP8, HSD17B4	rs1045241-C	0.711	4E-12	(women)	0.0338	[0.024-0.043] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1490	chr5	118729285	118729286	rs1045241	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	5q23.1	TNFAIP8, HSD17B4	rs1045241-C	0.7088	2E-7		0.0189	[0.012-0.026] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1490	chr5	118729285	118729286	rs1045241	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-hip ratio	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	5q23.1	TNFAIP8, HSD17B4	rs1045241-T	0.2864	3E-8	(EA, women)	0.027	[0.017-0.037] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1490	chr5	118729326	118729327	rs1045242	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	5q23.1	NR	rs1045242-G	NR	7E-13		0.0201	[0.015-0.026] unit increase	Affymetrix [9000000] (imputed)	N
1490	chr5	118729326	118729327	rs1045242	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q23.1	NR	rs1045242-G	0.245596	1E-22				Affymetrix, Illumina [24649327] (imputed)	N
1490	chr5	118729326	118729327	rs1045242	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	5q23.1	NR	rs1045242-?	NR	1E-16				Affymetrix [~ 8270000] (imputed)	N
1490	chr5	118729326	118729327	rs1045242	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	5q23.1		rs1045242-?	NR	5E-17				NR [~ 8900000] (imputed)	N
1490	chr5	118730450	118730451	rs6891981	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	5q23.1	TNFAIP8	rs6891981-G	NR	7E-15		0.0505266	[0.038-0.063] unit decrease	Affymetrix [319769] (imputed)	N
1490	chr5	118730450	118730451	rs6891981	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	5q23.1	TNFAIP8	rs6891981-G	NR	3E-15		0.0513541	[0.039-0.064] unit decrease	Affymetrix [319769] (imputed)	N
1490	chr5	118730450	118730451	rs6891981	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	5q23.1	TNFAIP8	rs6891981-G	NR	5E-11		0.0444139	[0.031-0.058] unit increase	Affymetrix [321788] (imputed)	N
1490	chr5	118732186	118732187	rs7703744	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	5q23.1	NR	rs7703744-?	NR	2E-7				Illumina [at least 7383741] (imputed)	N
1490	chr5	118739747	118739748	rs6894901	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	5q23.1		rs6894901-G	NR	2E-17		0.0216	[0.017-0.027] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1490	chr5	118739747	118739748	rs6894901	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	5q23.1	TNFAIP8	rs6894901-G	0.230034	3E-19		0.023653833	[0.018-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
1490	chr5	118739808	118739809	rs6895052	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	5q23.1		rs6895052-T	0.771	1E-14				Affymetrix [10369434] (imputed)	N
1490	chr5	118744936	118744937	rs34145041	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-to-hip ratio adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,049 whole genome sequenced individuals, 29,518 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,001 Mylopotamos (founder/genetic isolate) individuals, 867 Pomak (founder/genetic isolate) individuals	206,045 European ancestry individuals	5q23.1	TNFAIP8	rs34145041-G	0.6729	8E-6		0.0428	[0.024-0.062] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1490	chr5	118745202	118745203	rs140126749	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	5q23.1	TNFAIP8	rs140126749-A	NR	9E-9		0.0511015	[0.034-0.069] unit decrease	Affymetrix [319769] (imputed)	N
1490	chr5	118745202	118745203	rs140126749	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	5q23.1	TNFAIP8	rs140126749-A	NR	6E-9		0.0517433	[0.034-0.069] unit decrease	Affymetrix [319769] (imputed)	N
1491	chr5	118757435	118757436	rs28597856	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	5q23.1	TNFAIP8	rs28597856-C	NR	4E-11		0.0225524	[0.016-0.029] unit decrease	Affymetrix [319769] (imputed)	N
1491	chr5	118757435	118757436	rs28597856	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	5q23.1	TNFAIP8	rs28597856-C	NR	2E-11		0.0228209	[0.016-0.03] unit decrease	Affymetrix [319769] (imputed)	N
1491	chr5	118757435	118757436	rs28597856	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	5q23.1	TNFAIP8	rs28597856-C	NR	1E-10		0.0227817	[0.016-0.03] unit increase	Affymetrix [321788] (imputed)	N
1491	chr5	118781861	118781862	rs32645	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	5q23.1	RNA5SP190	rs32645-C	NR	6E-10		0.0186298	[0.013-0.025] unit decrease	Affymetrix [321788] (imputed)	N
1491	chr5	118781861	118781862	rs32645	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	5q23.1	RNA5SP190	rs32645-C	NR	3E-9		0.0172082	[0.012-0.023] unit decrease	Affymetrix [321016] (imputed)	N
1491	chr5	118792720	118792721	rs11749784	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	5q23.1	HSD17B4	rs11749784-G	NR	6E-11		0.0222831	[0.016-0.029] unit decrease	Affymetrix [319769] (imputed)	N
1491	chr5	118792720	118792721	rs11749784	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	5q23.1	HSD17B4	rs11749784-G	NR	9E-11		0.0229893	[0.016-0.03] unit increase	Affymetrix [321788] (imputed)	N
1491	chr5	118800313	118800314	rs72788170	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	5q23.1	HSD17B4	rs72788170-G	NR	6E-11		0.0222542	[0.016-0.029] unit decrease	Affymetrix [319769] (imputed)	N
1491	chr5	118804538	118804539	rs2678067	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	5q23.1	HSD17B4	rs2678067-A	NR	2E-11		0.0330312	[0.023-0.043] unit decrease	Affymetrix [319769] (imputed)	N
1491	chr5	118804538	118804539	rs2678067	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	5q23.1	HSD17B4	rs2678067-A	NR	2E-11		0.0330581	[0.023-0.043] unit decrease	Affymetrix [319769] (imputed)	N
1491	chr5	118804538	118804539	rs2678067	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	5q23.1	HSD17B4	rs2678067-A	NR	2E-9		0.0309971	[0.021-0.041] unit increase	Affymetrix [321788] (imputed)	N
1491	chr5	118848149	118848150	rs115863756	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	5q23.1	NR	rs115863756-?	NR	2E-9				Illumina [7760689] (imputed)	N
1491	chr5	118856270	118856271	rs161857	24487271	Weizman A	2014-03-01	Inflamm Bowel Dis	Clinical, serologic, and genetic factors associated with pyoderma gangrenosum and erythema nodosum in inflammatory bowel disease patients.	Pyoderma gangrenosum in inflammatory bowel disease	92 European ancestry cases, 5,664 European ancestry controls	NA	5q23.1	TNFAIP8, HSD17B4, FABP5L6	rs161857-T	NR	7E-6		3.0	[1.90-4.90]	Illumina [2017629] (imputed)	N
1492	chr5	118882501	118882502	rs11956614	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	5q23.1	HSD17B4	rs11956614-A	NR	1E-9		0.0213476	[0.015-0.028] unit increase	Affymetrix [321016] (imputed)	N
1492	chr5	118887745	118887746	rs1620133	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	5q23.1	HSD17B4	rs1620133-T	NR	5E-11		0.0196632	[0.014-0.026] unit increase	Affymetrix [319769] (imputed)	N
1492	chr5	118887745	118887746	rs1620133	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	5q23.1	HSD17B4	rs1620133-T	NR	5E-11		0.0196899	[0.014-0.026] unit increase	Affymetrix [319769] (imputed)	N
1492	chr5	118909005	118909006	rs1388107	27958378	Floyd JS	2016-12-13	Pharmacogenomics J	Large-scale pharmacogenomic study of sulfonylureas and the QT, JT and QRS intervals: CHARGE Pharmacogenomics Working Group.	JT interval (sulfonylurea treatment interaction)	2,095 European ancestry exposed individuals, 42,907 European ancestry unexposed individuals, 1,167 African American exposed individuals, 10,564 African American unexposed individuals, 794 Hispanic/Latino American exposed individuals, 14,330 Hispanic/Latino American unexposed individuals	NA	5q23.1	FAM170A, HSD17B4	rs1388107-?	NR	5E-7	(AA)	6.2	[3.85-8.55] ms decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1492	chr5	118912597	118912598	rs7726558	27958378	Floyd JS	2016-12-13	Pharmacogenomics J	Large-scale pharmacogenomic study of sulfonylureas and the QT, JT and QRS intervals: CHARGE Pharmacogenomics Working Group.	QT interval (sulfonylurea treatment interaction)	2,095 European ancestry exposed individuals, 42,907 European ancestry unexposed individuals, 1,167 African American exposed individuals, 10,564 African American unexposed individuals, 794 Hispanic/Latino American exposed individuals, 14,330 Hispanic/Latino American unexposed individuals	NA	5q23.1	HSD17B4, FAM170A	rs7726558-?	NR	4E-7	(AA)	6.2	[3.85-8.55] ms decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1492	chr5	118923600	118923601	rs140543491	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	5q23.1	HSD17B4	rs140543491-?		5E-9	(African)			Affymetrix, Illumina [18800000] (imputed)	N
1492	chr5	118926099	118926100	rs115631656	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	5q23.1	HSD17B4	rs115631656-G	NR	5E-9		0.033412	[0.022-0.045] unit decrease	Affymetrix [319769] (imputed)	N
1492	chr5	118926099	118926100	rs115631656	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	5q23.1	HSD17B4	rs115631656-G	NR	3E-8		0.03164	[0.02-0.043] unit decrease	Affymetrix [319769] (imputed)	N
1492	chr5	118963359	118963360	rs7706019	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid vs negative)	9,913 European ancestry cases, 85,072 European ancestry controls, 2,553 Hispanic or Latin American cases, 13,086 Hispanic or Latin American controls, 506 Black or African American cases, 3,110 Black or African American controls	NA	5q23.1		rs7706019-?	NR	1E-6		0.11705765	[0.071-0.164] unit increase	Illumina [9939936] (imputed)	N
1492	chr5	118966499	118966500	rs12109691	29071344	Zhou H	2017-10-25	JAMA Psychiatry	Genetic Risk Variants Associated With Comorbid Alcohol Dependence and Major Depression.	Major depression and alcohol dependence	3,041 African American individuals, 1,618 European ancestry individuals	1,612 African American individuals, 1,551 European ancestry individuals	5q23.1	intergenic	rs12109691-G	0.72	2E-6	(EA)	0.601	unit decrease	Illumina [at least 5086170] (imputed)	N
1493	chr5	119016413	119016414	rs330203	29109912	Rawofi L	2017-11-02	PeerJ	Genome-wide association study of pigmentary traits (skin and iris color) in individuals of East Asian ancestry.	Iris color (b* coordinate)	377 East Asian ancestry individuals	NA	5q23.1	CTC-507E12.1	rs330203-G	0.5	3E-6		0.354629	[0.21-0.5] unit decrease	Illumina [at least 520076] (imputed)	N
1493	chr5	119016413	119016414	rs330203	29109912	Rawofi L	2017-11-02	PeerJ	Genome-wide association study of pigmentary traits (skin and iris color) in individuals of East Asian ancestry.	Iris color (a* coordinate)	377 East Asian ancestry individuals	NA	5q23.1	CTC-507E12.1	rs330203-G	0.499635	7E-6		0.343	[0.2-0.49] unit decrease	Illumina [at least 520076] (imputed)	N
1494	chr5	119183939	119183940	rs12719264	26631737	Teumer A	2015-12-02	Diabetes	Genome-wide Association Studies Identify Genetic Loci Associated With Albuminuria in Diabetes.	Microalbuminuria	up to 54,116 European ancestry cases	NA	5q23.1	Intergenic	rs12719264-A	0.3	6E-6		0.11	[0.061-0.159] unit decrease	Affymetrix, Illumina [2191945] (imputed)	N
1494	chr5	119259248	119259249	rs113326966	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	5q23.1	NA	rs113326966-G		2E-12		0.0830329	[0.06-0.106] unit increase	Illumina [13288253] (imputed)	N
1495	chr5	119321172	119321173	rs190338033	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	5q23.1	Intergenic	rs190338033-A	NR	2E-7	(between families)	5.167	unit increase	Affymetrix [up to 15107142] (imputed)	N
1495	chr5	119388658	119388659	rs4895231	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	5q23.1	NA	rs4895231-C	0.4669	2E-12		0.0121	[0.0088-0.0154] unit increase	NR [~ 27400000] (imputed)	N
1495	chr5	119388658	119388659	rs4895231	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	5q23.1	NA	rs4895231-C	0.4669	2E-12		0.0121	[0.0088-0.0154] unit increase	NR [~ 27400000] (imputed)	N
1495	chr5	119389030	119389031	rs347551	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		5q23.1	PRR16	rs347551-C	0.527662	2E-10		0.00889176	[0.0062-0.0116] unit decrease	Affymetrix [12370749]	N
1495	chr5	119389030	119389031	rs347551	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	5q23.1	NR	rs347551-?	NR	1E-10				Affymetrix [~ 8270000] (imputed)	N
1495	chr5	119389030	119389031	rs347551	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	5q23.1		rs347551-?	NR	1E-20				NR [~ 8900000] (imputed)	N
1495	chr5	119389030	119389031	rs347551	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	5q23.1		rs347551-?	NR	7E-11				NR [~ 8900000] (imputed)	N
1496	chr5	119409231	119409232	rs3991624	30954325	Kamboh MI	2019-03-11	Neurobiol Aging	Population-based genome-wide association study of cognitive decline in older adults free of dementia: identification of a novel locus for the attention domain.	Age-related cognitive decline (global cognition) (slope of z-scores)	1,145 European ancestry individuals	NA	5q23.1	FAM170A, PRR16	rs3991624-G	0.14	2E-6				Illumina [5600000] (imputed)	N
1496	chr5	119409252	119409253	rs3991625	30954325	Kamboh MI	2019-03-11	Neurobiol Aging	Population-based genome-wide association study of cognitive decline in older adults free of dementia: identification of a novel locus for the attention domain.	Age-related cognitive decline (memory) (slope of z-scores)	1,145 European ancestry individuals	NA	5q23.1	FAM170A, PRR16	rs3991625-T	0.14	7E-7		0.29	unit increase	Illumina [5600000] (imputed)	N
1496	chr5	119417066	119417067	rs255788	21844884	Wheeler HE	2011-08-16	Pharmacogenomics J	Genome-wide meta-analysis identifies variants associated with platinating agent susceptibility across populations.	Response to platinum-based chemotherapy (carboplatin)	176 Sub-Saharan African ancestry lymphoblastoid cell lines, 83 African ancestry lymphoblastoid cell lines, 175 East Asian ancestry lymphoblastoid cell lines, 174 European ancestry lymphoblastoid cell lines	NA	5q23.1	intergenic	rs255788-?		2E-6				NR [~ 3000000] (imputed)	N
1496	chr5	119479681	119479682	rs7709073	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	5q23.1	NR	rs7709073-?	NR	1E-13				Affymetrix [NR]	N
1497	chr5	119574409	119574410	rs10051946	31466081	Luo A	2019-08-29	Neuropsychopharmacology	Epigenetic aging is accelerated in alcohol use disorder and regulated by genetic variation in APOL2.	Epigenetic age acceleration in alcohol use disorder	154 European ancestry individuals, 156 African American individuals	NA	5q23.1	PRR15	rs10051946-?	NR	2E-7	(EA)			Illumina [up to 666531]	N
1497	chr5	119657732	119657733	rs10519630	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Eubacterium belonging to family Erysipelotrichaceae)	1,068 Japanese ancestry individuals	NA	5q23.1	CTC-552D5.1	rs10519630-C	0.17	7E-6		0.532	[0.3-0.76] unit increase	Illumina [6380737] (imputed)	N
1498	chr5	119679447	119679448	rs78979090	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	5q23.1	NR	rs78979090-?	NR	3E-6				Affymetrix [5486770] (imputed)	N
1498	chr5	119763059	119763060	rs7727978	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	5q23.1	intergenic	rs7727978-A	0.6809	5E-9		0.1212	[0.081-0.162] mmHg decrease	Affymetrix [NR] (imputed)	N
1498	chr5	119778035	119778036	rs10478463	27629369	Gao J	2016-09-15	Neuropsychopharmacology	Genome-Wide Association Study of Loneliness Demonstrates a Role for Common Variation.	Loneliness (linear analysis)	8,490 European ancestry individuals, 1,228 African American individuals, 867 Hispanic American individuals, 175 individuals	NA	5q23.1	FAM170A, PRR16	rs10478463-?		2E-6	(EA)	0.408	[0.24-0.58] unit increase	Illumina [7205781] (imputed)	N
1498	chr5	119781568	119781569	rs1432457	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	5q23.1	PRR16	rs1432457-A	0.7158	4E-10		0.1199	[0.082-0.157] unit decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1499	chr5	119814304	119814305	rs10079265	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	5q23.1	PRR16	rs10079265-A	0.9871	4E-6		0.1414	[0.081-0.202] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1499	chr5	119823354	119823355	rs4340940	28957384	Kim SK	2017-09-28	PLoS One	Two genetic loci associated with ankle injury.	Ankle injury	1,421 European ancestry cases, 154 Hispanic/Latino cases, 121 East Asian ancestry cases, 81,843 European ancestry controls, 8,406 Hispanic/Latino controls, 7,397 East Asian ancestry controls	NA	5q23.1	NR	rs4340940-A	NR	7E-6		1.807		Affymetrix [8183964] (imputed)	N
1499	chr5	119854374	119854375	rs2405952	28322283	Chibnik LB	2017-03-21	Mol Psychiatry	Susceptibility to neurofibrillary tangles: role of the PTPRD locus and limited pleiotropy with other neuropathologies.	Cerebral amyloid angiopathy	404 European ancestry mild cases, 209 European ancestry moderate cases, 113 European ancestry severe cases, 183 European ancestry controls	369 individuals	5q23.1		rs2405952-C	0.99	4E-6	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1499	chr5	119867181	119867182	rs1404300	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5q23.1		rs1404300-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1499	chr5	119919046	119919047	rs9765600	31620175	Kornilov SA	2019-09-18	Front Genet	Genome-Wide Homozygosity Mapping Reveals Genes Associated With Cognitive Ability in Children From Saudi Arabia.	Verbal cognitive ability	354 Saudi Arabian ancestry children	NA	5q23.1	PRR16	rs9765600-?	NR	5E-6		4.64	[2.68-6.6] unit decrease	Illumina [285340]	N
1499	chr5	119919046	119919047	rs9765600	31620175	Kornilov SA	2019-09-18	Front Genet	Genome-Wide Homozygosity Mapping Reveals Genes Associated With Cognitive Ability in Children From Saudi Arabia.	Numerical cognitive ability	354 Saudi Arabian ancestry children	NA	5q23.1	PRR16	rs9765600-?	NR	1E-6		5.18	[3.14-7.22] unit decrease	Illumina [285340]	N
1500	chr5	119937690	119937691	rs1584468	22610502	Kennedy RB	2012-05-19	Hum Genet	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IL-12p40)	Up to 512 European ancestry individuals, up to 199 African American individuals	NA	5q23.1	PRR16	rs1584468-A		9E-8	(EA)			Illumina [NR]	N
1500	chr5	119973337	119973337	rs70985233	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-2 receptor antagonist levels	3,677 Finnish ancestry individuals	NA	5q23.1	NR	rs70985233-TG		2E-6		0.1264	[0.074-0.179] SD units increase	NR [10700000] (imputed)	N
1500	chr5	120019067	120019068	rs7714426	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	5q23.1	NR	rs7714426-C	NR	1E-8		0.01829	[0.012-0.025] unit increase	Affymetrix [10847151] (imputed)	N
1501	chr5	120093857	120093858	rs61358955	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	5q23.1	Intergenic	rs61358955-A	0.6889	2E-10	(MTAG)	0.0113	[0.0078-0.0148] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1501	chr5	120101693	120101694	rs1584469	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	5q23.1		rs1584469-?	NR	2E-7				NR [~ 8900000] (imputed)	N
1501	chr5	120102027	120102028	rs62379838	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	5q23.1		rs62379838-T	0.6953	2E-15		0.0121	[0.0092-0.015] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1501	chr5	120102027	120102028	rs62379838	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	5q23.1	Intergenic	rs62379838-T	0.6953	3E-16	(MTAG)	0.0116	[0.0089-0.0143] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1501	chr5	120102027	120102028	rs62379838	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	5q23.1	NR	rs62379838-T	0.6923	4E-8		0.013223585	NR unit increase	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
1501	chr5	120103172	120103173	rs11241565	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (college completion)	280,007 European ancestry individuals	NA	5q23.1	NR	rs11241565-?	0.6089	4E-8		1.033925	[NR]	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
1501	chr5	120122693	120122694	rs10068422	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	5q23.1		rs10068422-?	NR	1E-27				NR [~ 8900000] (imputed)	N
1501	chr5	120144024	120144025	rs11953061	34187846	Ong JS	2021-06-29	Gut	Multitrait genetic association analysis identifies 50 new risk loci for gastro-oesophageal reflux, seven new loci for Barrett's oesophagus and provides insights into clinical heterogeneity in reflux diagnosis.	Gastroesophageal reflux disease	129,080 European ancestry cases, 473,524 European ancestry controls	462,753 cases, 1,127,474 controls	5q23.1	NR	rs11953061-C	0.66	3E-8		0.028	unit decrease	NR [2324712] (imputed)	N
1501	chr5	120144767	120144768	rs7715474	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	5q23.1	Intergenic	rs7715474-T	0.477	3E-6		0.008	unit decrease	Illumina [NR] (imputed)	N
1501	chr5	120174465	120174466	rs12522598	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (anti-inflammatory and antirheumatic products, non-steroids)	74,150 European ancestry cases, 90,370 European ancestry controls, 29,694 East Asian ancestry cases, 149,032 East Asian ancestry controls	NA	5q23.1		rs12522598-G	NR	1E-9		0.0389	[0.026-0.051] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1501	chr5	120174465	120174466	rs12522598	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (anti-inflammatory and antirheumatic products, non-steroids)	74,150 European ancestry cases, 90,370 European ancestry controls	NA	5q23.1	CTD-2334D19.1	rs12522598-G	0.288625	3E-9		0.045219533	[0.03-0.06] unit increase	Affymetrix [7288503] (imputed)	N
1501	chr5	120176329	120176330	rs62381120	33830993	Johnston KJA	2021-04-08	PLoS Genet	Sex-stratified genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	209,093 British ancestry women	NA	5q23.1	CTD-2334D19.1, AC008565.1	rs62381120-T	NR	4E-8		0.021	[0.013-0.029] unit decrease	NR [NR] (imputed)	N
1502	chr5	120198310	120198311	rs10041997	25133637	Scannell Bryan M	2014-08-18	PLoS One	Genome-wide association studies and heritability estimates of body mass index related phenotypes in Bangladeshi adults.	Body mass index (change over time)	2,643 Bangladeshi ancestry females, 2,340 Bangladeshi ancestry males	NA	5q23.1	PRR16, FTMT	rs10041997-A	0.518	4E-7		0.138	[0.065-0.211] unit increase	Illumina [1208102] (imputed)	N
1502	chr5	120216036	120216037	rs78975256	23897914	Wang H	2013-07-29	Pediatrics	A genome-wide association study (GWAS) for bronchopulmonary dysplasia.	Bronchopulmonary dysplasia	117 African American newborn cases, 108 African American newborn controls, 448 Hispanic newborn cases, 460 Hispanic newborn controls, 74 Asian or Pacific Islander ancestry newborn cases, 93 Asian or Pacific Islander ancestry newborn controls, 174 European ancestry newborn cases, 216 European ancestry newborn controls, 14 newborn cases, 22 newborn controls	371 newborn cases, 424 newborn controls	5q23.1	FTMT, PRR16	rs78975256-G	0.02	4E-6		2.439	[0.28-0.6]	Illumina [1795103]	N
1503	chr5	120359917	120359918	rs13166268	25648963	Debette S	2014-11-25	Biol Psychiatry	Genome-wide studies of verbal declarative memory in nondemented older people: the Cohorts for Heart and Aging Research in Genomic Epidemiology consortium.	Verbal declarative memory	Up to 27,337 European ancestry individuals, up to 472 Korkulan individuals, up to 1,267 Erasmus Rucphen Family individuals	Up to 10,617 European ancestry individuals, up to 3,811 African American individuals	5q23.1	PRR16, FTMT	rs13166268-C	0.9	9E-7	(CVLT-dr, EA)	0.4823	[0.29-0.67] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1503	chr5	120364554	120364554	rs147675704	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 14, intercanthal width)	2,187 European ancestry individuals	NA	5q23.1	NR	rs147675704-TG	0.2431	5E-6		0.1596	[0.091-0.228] unit decrease	Illumina [10677593] (imputed)	N
1503	chr5	120391181	120391182	rs200508662	29325848	Martin J	2017-12-02	Biol Psychiatry	A Genetic Investigation of Sex Bias in the Prevalence of Attention-Deficit/Hyperactivity Disorder.	Attention deficit hyperactivity disorder	14,154 European ancestry male cases, 17,948 European ancestry male controls	NA	5q23.1	intergenic	rs200508662-T	NR	3E-8	(males)	0.131	[0.084-0.178] unit increase	Illumina [7531543] (imputed)	N
1503	chr5	120424661	120424662	rs11960097	28358823	Kim SK	2017-03-30	PLoS One	Genome-wide association screens for Achilles tendon and ACL tears and tendinopathy.	Anterior cruciate ligament rupture	495 European ancestry cases, 54 Latin-American cases, 49 East Asian ancestry cases, 82,769 European ancestry controls, 8,506 Latin-American controls, 7,469 East Asian ancestry controls		5q23.1	NR	rs11960097-G	NR	6E-7		1.54	[1.37-1.71]	Affymetrix [8303052] (imputed)	N
1504	chr5	120510350	120510351	rs150429966	30886212	Eszlari N	2019-03-18	Transl Psychiatry	Genome-wide association analysis reveals KCTD12 and miR-383-binding genes in the background of rumination.	Rumination (response to stress)	1,758 European ancestry individuals	NA	5q23.1	intergenic	rs150429966-G	NR	9E-6		0.307	NR unit increase	Illumina [3474641] (imputed)	N
1504	chr5	120552530	120552531	rs56276481	33106475	Li QS	2020-10-26	Transl Psychiatry	Genome-wide association studies of antidepressant class response and treatment-resistant depression.	Response to SSRI (responders vs non-responders)	13,130 European ancestry responders, 6,610 European ancestry non-responders	NA	5q23.1	NR	rs56276481-T	NR	1E-5		0.8016	NR	Illumina [at least 560000] (imputed)	N
1505	chr5	120596942	120596943	rs73276540	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,931 Sub-Saharan African ancestry males	NA	5q23.1		rs73276540-C	0.927372	8E-6		0.0231149	[0.013-0.033] unit increase	Illumina [13900000] (imputed)	N
1505	chr5	120599996	120599997	rs79031501	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	5q23.1	NR	rs79031501-?	NR	6E-6		11.401	NR unit increase	Affymetrix [at least 600000] (imputed)	N
1505	chr5	120601405	120601406	rs965460	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	5q23.1	NR	rs965460-?	NR	6E-6		11.401	NR unit increase	Affymetrix [at least 600000] (imputed)	N
1505	chr5	120606231	120606232	rs114726259	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	5q23.1	NR	rs114726259-?	NR	6E-6		11.591	NR unit increase	Affymetrix [at least 600000] (imputed)	N
1505	chr5	120630218	120630219	rs11241589	34737425	Mansour Aly D	2021-11-04	Nat Genet	Genome-wide association analyses highlight etiological differences underlying newly defined subtypes of diabetes.	Severe autoimmune type 2 diabetes	452 Scandinavian ancestry cases, 2,744 Scandinavian ancestry controls	NA	5q23.1	FAM170A	rs11241589-G	0.344555	9E-6		1.41	[1.211 - 1.64]	Illumina [5396854] (imputed)	N
1505	chr5	120649566	120649567	rs62379951	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Supramarginal gyrus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	5q23.1	NR	rs62379951-?		6E-6				Illumina [4322238] (imputed)	N
1505	chr5	120666322	120666323	rs150934526	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	5q23.1	PRR16, FTMT	rs150934526-T	0.01	9E-7		0.4745	[0.29-0.66] unit increase	Illumina [~ 9000000] (imputed)	N
1505	chr5	120702357	120702358	rs150616616	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	5q23.1	PRR16, FTMT	rs150616616-C	0.01	2E-8	(EA)	0.5489	[0.36-0.74] unit increase	Illumina [~ 9000000] (imputed)	N
1506	chr5	120764581	120764582	rs2406514	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Corpus callosum Mid-posterior volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	5q23.1	NR	rs2406514-?		3E-6				Illumina [4322238] (imputed)	N
1506	chr5	120779307	120779308	rs78592102	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	5q23.1	PRR16, FTMT	rs78592102-C	0.03	2E-6		0.2414	[0.14-0.34] unit increase	Illumina [~ 9000000] (imputed)	N
1507	chr5	120854631	120854632	rs4895178	30868120	Berghuis B	2019-01-17	Epilepsia Open	A genome-wide association study of sodium levels and drug metabolism in an epilepsy cohort treated with carbamazepine and oxcarbazepine.	Carbamazepine- or oxcarbazepine-induced hyponatremia in epilepsy	448 European ancestry cases, 804 European ancestry controls	NA	5q23.1	NR	rs4895178-?		1E-6		1.55	[1.30-1.85]	Illumina [NR]	N
1507	chr5	120876336	120876337	rs149014830	28043905	Nicoletti P	2016-12-30	Gastroenterology	Association of Liver Injury From Specific Drugs, or Groups of Drugs, With Polymorphisms in HLA and Other Genes in a Genome-Wide Association Study.	Drug-induced liver injury (diclofenac)	67 European ancestry cases, 10,588 European ancestry controls	NA	5q23.1	NR	rs149014830-?	NR	7E-7		6.04	2.96-12.3	Illumina [505740] (imputed)	N
1507	chr5	120884450	120884451	rs111326090	32157568	Strupp M	2020-03-10	Cerebellum	A Variation in FGF14 Is Associated with Downbeat Nystagmus in a Genome-Wide Association Study.	Idiopathic downbeat nystagmus	106 European ancestry cases, 2,609 European ancestry controls	NA	5q23.1	FTMT	rs111326090-G	0.186	9E-6		2.1276596	[1.54-3.03]	Illumina [7759885] (imputed)	N
1507	chr5	120887413	120887414	rs550975007	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	5q23.1	RPL23AP44	rs550975007-A	0.9988	2E-6		1.421	[0.84-2] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1507	chr5	120890752	120890753	rs148929820	33204752	Butler-Laporte G	2020-09-24	Open Forum Infect Dis	Genetic Determinants of Antibody-Mediated Immune Responses to Infectious Diseases Agents: A Genome-Wide and HLA Association Study.	Toxoplasma gondii sag1 antibody levels	3,919 White British ancestry individuals	NA	5q23.1	510I6.1, RP11	rs148929820-G	0.975	9E-10		0.44	[0.30-0.58] unit decrease	NR [25472218] (imputed)	N
1507	chr5	120899116	120899117	rs181634374	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		5q23.1	Intergenic	rs181634374-T	0.003	8E-6	(liability model)	0.77	[0.44-1.1] unit increase	NR [19725427] (imputed)	N
1507	chr5	120906481	120906482	rs12109307	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	QRS duration in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	5q23.1	NR	rs12109307-?	NR	2E-6				Affymetrix [5486770] (imputed)	N
1507	chr5	120913731	120913732	rs4493703	33597122	Verbitsky M	2021-02-17	J Am Soc Nephrol	Copy Number Variant Analysis and Genome-wide Association Study Identify Loci with Large Effect for Vesicoureteral Reflux.	Vesicoureteral reflux	1,395 European ancestry cases, 5,366 European ancestry controls	NA	5q23.1	NR	rs4493703-G	0.3442	3E-7	(dominant, male)	0.5484276	[0.436297032669468-0.689376302212936]	Affymetrix, Illumina [6131010] (imputed)	N
1507	chr5	120950049	120950050	rs72791296	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1b levels	8,243 Finnish ancestry individuals	NA	5q23.1	NR	rs72791296-C	NR	4E-7		0.2369	[0.15-0.33] SD units decrease	NR [10700000] (imputed)	N
1508	chr5	121090822	121090823	rs113195149	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	5q23.1		rs113195149-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1509	chr5	121178514	121178515	rs6887649	25140149	Hohman TJ	2014-08-04	Front Aging Neurosci	Genetic variation modifies risk for neurodegeneration based on biomarker status.	Left inferior lateral ventricle volume (Cerebrospinal fluid biomarker status interaction)	382 European ancestry mild cognitive impairment cases, 114 European ancestry Alzheimer's disease cases, 194 European ancestry controls	NA	5q23.1	FTMT	rs6887649-?		2E-8	(Baseline, amyloid positive)	5.68	[NR] unit increase interaction	Illumina [296267]	N
1509	chr5	121194225	121194226	rs9885577	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	5q23.1		rs9885577-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1510	chr5	121243866	121243867	rs4632824	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	5q23.1		rs4632824-G	NR	4E-8		0.0111	[0.0072-0.015] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1510	chr5	121263583	121263584	rs79055704	32438682	Mateos MK	2020-05-19	Cancers (Basel)	Genome-Wide Association Meta-Analysis of Single-Nucleotide Polymorphisms and Symptomatic Venous Thromboembolism during Therapy for Acute Lymphoblastic Leukemia and Lymphoma in Caucasian Children.	Childhood ALL/LBL (acute lymphoblastic leukemia/lymphoblastic lymphoma) treatment-related venous thromboembolism	92 European ancestry cases, 1,481 European ancestry controls	NA	5q23.1	NR	rs79055704-?		2E-6		25.8	[6.86-97.11]	Illumina [NR] (imputed)	N
1510	chr5	121268245	121268245	rs35604819	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	5q23.1	SRFBP1	rs35604819-G	NR	3E-9		0.0265627	[0.018-0.035] unit increase	Affymetrix [321114] (imputed)	N
1510	chr5	121269497	121269498	rs2914598	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5q23.1		rs2914598-?	NR	4E-15				NR [~ 8900000] (imputed)	N
1510	chr5	121276796	121276797	rs56079296	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	5q23.1	intergenic	rs56079296-A	0.189	2E-7		0.042	[0.026-0.058] unit increase	Affymetrix [7947838] (imputed)	N
1510	chr5	121279252	121279253	rs12153375	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	5q23.1	SRFBP1	rs12153375-C	NR	2E-8		0.0176301	[0.012-0.024] unit increase	Affymetrix [321114] (imputed)	N
1510	chr5	121287060	121287061	rs2914609	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	5q23.1	FTMT, SRFBP1	rs2914609-T		2E-6		0.235	unit increase	Affymetrix [at least 2696785] (imputed)	N
1510	chr5	121287060	121287061	rs2914609	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	5q23.1	FTMT, SRFBP1	rs2914609-T		4E-6	(EA)	0.234	unit increase	Affymetrix [at least 2696785] (imputed)	N
1510	chr5	121287060	121287061	rs2914609	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	5q23.1	FTMT, SRFBP1	rs2914609-T		4E-6		0.213	unit increase	Affymetrix [at least 2696785] (imputed)	N
1510	chr5	121287060	121287061	rs2914609	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	5q23.1	FTMT, SRFBP1	rs2914609-T		9E-9		0.188	unit increase	Affymetrix [at least 2696785] (imputed)	N
1510	chr5	121361749	121361750	rs113075218	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	5q23.1	SRFBP1	rs113075218-A	0.184813	1E-6		1.05	[1.03-1.07]	NR [8126035] (imputed)	N
1510	chr5	121361749	121361750	rs113075218	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	5q23.1	SRFBP1	rs113075218-A	0.1885	4E-8		0.0448	[0.029-0.061] unit increase	NR [8041861] (imputed)	N
1510	chr5	121370081	121370082	rs201008762	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	5q23.1	NR	rs201008762-?	NR	9E-8		6141.3804	NR unit decrease	Illumina [2379855]	N
1511	chr5	121409179	121409180	rs2956540	32339537	Roberts V	2020-04-24	J Invest Dermatol	Genome wide association study identifies genetic associations with perceived age.	Youthful appearance (self-reported)	423,992 European ancestry individuals	NA	5q23.1	LOX	rs2956540-G	0.554658	4E-11		1.0294077	NR	Affymetrix [~ 9600000] (imputed)	N
1511	chr5	121410528	121410529	rs10059661	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	5q23.1	NR	rs10059661-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1511	chr5	121410528	121410529	rs10059661	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	5q23.1	LOX	rs10059661-C	0.8263	2E-22		0.0308	[0.025-0.037] unit decrease	Affymetrix [19819130] (imputed)	N
1511	chr5	121411600	121411601	rs2979862	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	5q23.1		rs2979862-?	NR	1E-28				NR [~ 8900000] (imputed)	N
1511	chr5	121412412	121412413	rs78389649	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	5q23.1		rs78389649-C	NR	5E-15		0.0109	[0.0082-0.0136] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1511	chr5	121413207	121413208	rs1800449	28714974	Klarin D	2017-07-17	Nat Genet	Genetic analysis in UK Biobank links insulin resistance and transendothelial migration pathways to coronary artery disease.	Coronary artery disease	4,831 European ancestry cases, 115,455 European ancestry controls	up to 60,801 European and unknown ancestry cases, up to 123,504 European and unknown ancestry controls	5q23.1	LOX	rs1800449-T	0.17	3E-9		1.07	[1.05-1.09]	Affymetrix [9061845] (imputed)	N
1511	chr5	121417462	121417463	rs840464	33649486	Hardcastle AJ	2021-03-01	Commun Biol	A multi-ethnic genome-wide association study implicates collagen matrix integrity and cell differentiation pathways in keratoconus.	Keratoconus	2,116 European ancestry cases, 24,626 European ancestry controls	1, 389 European ancestry cases, 79,727 European ancestry controls, 759 South Asian ancestry cases, 8,009 South Asian ancestry controls, 405 African ancestry cases, 4,185 African ancestry controls	5q23.1	SRFBP1, LOX	rs840464-T	NR	2E-20		0.233	[0.18-0.28] unit increase	Affymetrix [7701190] (imputed)	N
1511	chr5	121417462	121417463	rs840464	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	5q23.1	LOX, ZNF474	rs840464-G	0.4816	6E-14		0.1004	[0.073-0.128] unit increase	Affymetrix [~ 11900000] (imputed)	N
1511	chr5	121420918	121420919	rs2731646	32528159	Choquet H	2020-06-11	Commun Biol	A multiethnic genome-wide analysis of 44,039 individuals identifies 41 new loci associated with central corneal thickness.	Central corneal thickness	32,292 European ancestry individuals, 9,623 East Asian ancestry individuals, 1,367 Hispanic/Latino individuals, 757 African American  individuals	NA	5q23.1	LOX	rs2731646-?	NA	5E-13		1.73	[1.26-2.2] unit increase	Affymetrix [5541230] (imputed)	N
1511	chr5	121420918	121420919	rs2731646	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	5q23.1	LOX, ZNF474	rs2731646-A	0.4762	2E-14		0.1028	[0.075-0.13] unit increase	Affymetrix [~ 11900000] (imputed)	N
1511	chr5	121423418	121423419	rs864548	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	5q23.1	LOX	rs864548-A	NR	5E-8		0.0214759	[0.014-0.029] unit increase	Affymetrix [321114] (imputed)	N
1511	chr5	121426982	121426983	rs994445	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	5q23.1		rs994445-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1511	chr5	121436595	121436596	rs890749	23400010	Del-Aguila JL	2013-02-12	Pharmacogenomics J	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NA	5q23.2	LOX	rs890749-C	0.19	8E-6	(EA-glucose response)	3.25	[1.82-4.68] mg/dL decrease	Affymetrix, Illumina [> 2000000] (imputed)	N
1512	chr5	121509289	121509290	rs12515659	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	5q23.2	NR	rs12515659-?	NR	5E-8	(left vessel)			NR [9227495] (imputed)	N
1512	chr5	121510585	121510586	rs17148926	32358547	Persyn E	2020-05-01	Nat Commun	Genome-wide association study of MRI markers of cerebral small vessel disease in 42,310 participants.	White matter hyperintensities	39,011 European ancestry individuals, 2,099 African ancestry individuals, 795 Hispanic individuals, 3,299 Asian ancestry individuals	NA	5q23.2	CTC-441N14.4	rs17148926-A		4E-9		5.124	[NR] Zscore increase	Affymetrix [9700000] (imputed)	N
1512	chr5	121510585	121510586	rs17148926	25663218	Verhaaren BF	2015-07-02	Circ Cardiovasc Genet	Multiethnic genome-wide association study of cerebral white matter hyperintensities on MRI.	White matter hyperintensity burden	17,936 European ancestry individuals, 1,943 African American ancestry individuals, 795 Hispanic individuals, 204 Chinese ancestry individuals, 201 Malay ancestry individuals	NA	5q23.2	LOC100505841	rs17148926-A	0.83	7E-7				Affymetrix, Illumina [14227402] (imputed)	N
1512	chr5	121515194	121515195	rs11957829	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Stroke	40,585 European ancestry cases, 406,111 European ancestry controls, 17,369 East Asian ancestry cases, 28,195 East Asian ancestry controls, 2,437 South Asian ancestry cases, 6,707 South Asian ancestry controls, 5,541 African American cases, 15,154 African American controls, 365 Asian ancestry cases, 333 Asian ancestry controls, 865 Latin American cases, 692 Latin American controls	NA	5q23.2	LOC100505841	rs11957829-?	NR	2E-8				NR [~ 8000000] (imputed)	N
1512	chr5	121515194	121515195	rs11957829	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Stroke	40,585 European ancestry cases, 406,111 European ancestry controls	NA	5q23.2	LOC100505841	rs11957829-?	NR	2E-6				NR [~ 8000000] (imputed)	N
1512	chr5	121515194	121515195	rs11957829	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Ischemic stroke (small-vessel)	5,386 European ancestry cases, 192,662 European ancestry controls, 5,096 East Asian ancestry cases, 28,195 East Asian ancestry controls, 314 South Asian ancestry cases, 6,707 South Asian ancestry controls, 694 African American cases, 15,146 African American controls, 134 Asian ancestry cases, 333 Asian ancestry controls, 86 Latin American cases, 692 Latin American controls	NA	5q23.2	LOC100505841	rs11957829-?	NR	4E-7				NR [~ 8000000] (imputed)	N
1512	chr5	121515194	121515195	rs11957829	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Ischemic stroke	34,217 European ancestry cases, 406,111 European ancestry controls, 17,369 East Asian ancestry cases, 28,195 East Asian ancestry controls, 2,437 South Asian ancestry cases, 6,707 South Asian ancestry controls, 5,541 African American cases, 15,146 African American controls, 222 Asian ancestry cases, 333 Asian ancestry controls, 555 Latin American cases, 692 Latin American controls	NA	5q23.2	LOC100505841	rs11957829-?	NR	8E-9				NR [~ 8000000] (imputed)	N
1512	chr5	121515194	121515195	rs11957829	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Ischemic stroke	34,217 European ancestry cases, 406,111 European ancestry controls	NA	5q23.2	LOC100505841	rs11957829-?	NR	8E-7				NR [~ 8000000] (imputed)	N
1512	chr5	121518308	121518309	rs9112	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	5q23.2		rs9112-A	0.42	2E-37		12.8	z score increase	Affymetrix [9061022] (imputed)	N
1512	chr5	121518308	121518309	rs9112	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	5q23.2		rs9112-A	0.42	3E-13		7.3	z score increase	Affymetrix [9061022] (imputed)	N
1512	chr5	121518308	121518309	rs9112	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	5q23.2	NR	rs9112-A	0.4078	1E-17				NR [9056863] (imputed)	N
1512	chr5	121518308	121518309	rs9112	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	5q23.2	NR	rs9112-A	0.4078	8E-13				NR [9056863] (imputed)	N
1512	chr5	121518308	121518309	rs9112	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	5q23.2	NR	rs9112-?	NR	1E-9	(left vessel)			NR [9227495] (imputed)	N
1512	chr5	121518377	121518378	rs2303655	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume x hypertension interaction (2df)	46,055 European ancestry individuals, 2,469 African American individuals	NA	5q23.2	LOC100505841	rs2303655-T	0.793	8E-11				Affymetrix, Illumina [9900000] (imputed)	N
1512	chr5	121518377	121518378	rs2303655	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume x hypertension interaction (2df)	46,055 European ancestry individuals	NA	5q23.2	LOC100505841	rs2303655-T	0.78	1E-11				Affymetrix, Illumina [9900000] (imputed)	N
1512	chr5	121518377	121518378	rs2303655	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume (adjusted for hypertension)	46,055 European ancestry individuals, 2,469 African American individuals	NA	5q23.2	LOC100505841	rs2303655-T	NR	4E-11		0.0487	[0.034-0.063] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1512	chr5	121518377	121518378	rs2303655	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume (adjusted for hypertension)	46,055 European ancestry individuals	NA	5q23.2	LOC100505841	rs2303655-T	0.78	4E-11		0.049	[0.035-0.063] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1512	chr5	121518377	121518378	rs2303655	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	48,454 European ancestry individuals	NA	5q23.2	LOC100505841	rs2303655-T	NR	5E-11		0.0478	[0.033-0.062] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1512	chr5	121518377	121518378	rs2303655	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	2,516 African American individuals, 48,454 European ancestry individuals	NA	5q23.2	LOC100505841	rs2303655-T	0.7798	4E-11		0.0483	[0.034-0.063] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1512	chr5	121526721	121526722	rs17367669	33111402	Tan MMX	2020-10-28	Mov Disord	Genome-Wide Association Studies of Cognitive and Motor Progression in Parkinson's Disease.	Parkinson's disease progression (composite)	2,755 individuals	NA	5q23.2	LOC100505841	rs17367669-T	0.22	3E-6		0.23	[0.13-0.33] unit increase	Illumina [5918868] (imputed)	N
1512	chr5	121529353	121529355	rs5870994	33111402	Tan MMX	2020-10-28	Mov Disord	Genome-Wide Association Studies of Cognitive and Motor Progression in Parkinson's Disease.	Parkinson's disease progression (motor)	2,848 individuals	NA	5q23.2	LOC100505841	rs5870994-C	0.23	1E-6		0.21	[0.13-0.29] unit increase	Illumina [5918868] (imputed)	N
1513	chr5	121634978	121634979	rs149500905	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia	11,197 European ancestry low myopic cases, 21,416 European ancestry emmetropia controls	NA	5q23.2	NR	rs149500905-?	NR	3E-6		0.639477	[0.37-0.91] unit increase	NR [13958389] (imputed)	N
1513	chr5	121753781	121753782	rs304391	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	5q23.2		rs304391-?	NR	4E-8				NR [9705931] (imputed)	N
1513	chr5	121761460	121761461	rs2242223	30718454	Arnau-Soler A	2019-02-04	Transl Psychiatry	Genome-wide by environment interaction studies of depressive symptoms and psychosocial stress in UK Biobank and Generation Scotland.	Depressive symptoms x independent stressful life events interaction (2df test)	4,919 European ancestry individuals	NA	5q23.2	SNCAIP	rs2242223-G	0.2384	5E-6		0.0156052	NR unit decrease	Illumina [560351]	N
1514	chr5	121774581	121774582	rs149641852	31537649	Salem RM	2019-09-19	J Am Soc Nephrol	Genome-Wide Association Study of Diabetic Kidney Disease Highlights Biology Involved in Glomerular Basement Membrane Collagen.	Chronic kidney disease (end stage renal disease vs. normal eGFR) in type 1 diabetes	2,235 European ancestry cases, 14,993 European ancestry controls	NA	5q23.2	SNCAIP	rs149641852-T	0.012	1E-8		9.01	[NR]	Illumina [up to 49000000] (imputed)	N
1514	chr5	121778606	121778606	rs3842595	27047539	Fridley BL	2016-03-22	Front Genet	Genome-Wide Study of Response to Platinum, Taxane, and Combination Therapy in Ovarian Cancer: In vitro Phenotypes, Inherited Variation, and Disease Recurrence.	Response to paclitaxel in ovarian cancer (Caspase 3/7 EC50)	74 lymphoblastoid cell lines	NA	5q23.2	MGC32805, SNCAIP	rs3842595-?	NR	3E-7				Illumina [6243550] (imputed)	N
1514	chr5	121811859	121811860	rs304368	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	5q23.2		rs304368-G	NR	2E-8		0.0097	[0.0064-0.013] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
1514	chr5	121854524	121854525	rs6867820	25897833	Thompson AG	2015-04-21	Transl Psychiatry	Genome-wide association study of behavioural and psychiatric features in human prion disease.	Mood disorder and prion disease	Up to 170 cases, 5,200 controls	NA	5q23.2	SNCAIP	rs6867820-?	0.224	6E-6		2.24	[1.60-3.12]	Illumina [518938]	N
1514	chr5	121866989	121866990	rs4836027	29769521	Ramirez J	2018-05-16	Nat Commun	Thirty loci identified for heart rate response to exercise and recovery implicate autonomic nervous system.	Heart rate response to exercise	up to 35,455 European ancestry females, up to 31,802 European ancestry males	NA	5q23.2	SNCA1P	rs4836027-T	0.693289	3E-12	(males)	0.630437	[0.45-0.81] bpm increase	Affymetrix [~ 7800000] (imputed)	N
1514	chr5	121866989	121866990	rs4836027	29769521	Ramirez J	2018-05-16	Nat Commun	Thirty loci identified for heart rate response to exercise and recovery implicate autonomic nervous system.	Heart rate response to exercise	up to 35,455 European ancestry females, up to 31,802 European ancestry males	NA	5q23.2	SNCA1P	rs4836027-T	0.693289	1E-10	(females)	0.611	[0.42-0.8] bpm increase	Affymetrix [~ 7800000] (imputed)	N
1514	chr5	121866989	121866990	rs4836027	29769521	Ramirez J	2018-05-16	Nat Commun	Thirty loci identified for heart rate response to exercise and recovery implicate autonomic nervous system.	Heart rate response to exercise	up to 35,455 European ancestry females, up to 31,802 European ancestry males	NA	5q23.2	SNCA1P	rs4836027-T	0.693	1E-20		0.613	[0.48-0.74] bpm increase	Affymetrix [~ 7800000] (imputed)	N
1514	chr5	121866989	121866990	rs4836027	29497042	Verweij N	2018-03-01	Nat Commun	Genetic study links components of the autonomous nervous system to heart-rate profile during exercise.	Heart rate response to recovery post exercise (50 sec)	5,4137 European ancestry individuals, 1,744 Asian individuals, 1,445 African individuals, 468 admixed individuals, 1,024 individuals	NA	5q23.2	SNCAIP, PRDM6	rs4836027-T	0.676066	1E-9		0.0382969	[0.026-0.051] unit increase	Affymetrix [509255] (imputed)	N
1514	chr5	121866989	121866990	rs4836027	29497042	Verweij N	2018-03-01	Nat Commun	Genetic study links components of the autonomous nervous system to heart-rate profile during exercise.	Heart rate increase in response to exercise	5,4137 European ancestry individuals, 1,744 Asian ancestry individuals, 1,445 African ancestry individuals, 468 admixed individuals, 1,024 individuals	NA	5q23.2	SNCAIP, PRDM6	rs4836027-T	0.676131	2E-15		0.0500355	[0.038-0.062] unit increase	Affymetrix [509255] (imputed)	N
1514	chr5	121868475	121868475	rs111299422	34753499	Hanscombe KB	2021-11-09	Genome Med	The genetic case for cardiorespiratory fitness as a clinical vital sign and the routine prescription of physical activity in healthcare.	Cardiorespiratory fitness slope	70,783 European ancestry individuals	NA	5q23.2		rs111299422-T	0.69	1E-10		0.007	[0.005-0.009] unit increase	Affymetrix [8918919] (imputed)	N
1514	chr5	121868475	121868475	rs111299422	34753499	Hanscombe KB	2021-11-09	Genome Med	The genetic case for cardiorespiratory fitness as a clinical vital sign and the routine prescription of physical activity in healthcare.	Cardiorespiratory fitness slope	36,364 European ancestry women	NA	5q23.2		rs111299422-T	0.69	3E-8		0.01	[0.0061-0.0139] unit increase	Affymetrix [8918919] (imputed)	N
1514	chr5	121868475	121868475	rs111299422	34753499	Hanscombe KB	2021-11-09	Genome Med	The genetic case for cardiorespiratory fitness as a clinical vital sign and the routine prescription of physical activity in healthcare.	Cardiorespiratory fitness (vo2 max)	70,783 European ancestry individuals	NA	5q23.2		rs111299422-T	0.69	7E-14		0.038	[0.028-0.048] unit decrease	Affymetrix [8918919] (imputed)	N
1514	chr5	121868475	121868475	rs111299422	34753499	Hanscombe KB	2021-11-09	Genome Med	The genetic case for cardiorespiratory fitness as a clinical vital sign and the routine prescription of physical activity in healthcare.	Cardiorespiratory fitness (vo2 max)	34,419 European ancestry men	NA	5q23.2		rs111299422-T	0.69	3E-10		0.05	[0.034-0.066] unit decrease	Affymetrix [8918919] (imputed)	N
1514	chr5	121868932	121868933	rs6595376	29769521	Ramirez J	2018-05-16	Nat Commun	Thirty loci identified for heart rate response to exercise and recovery implicate autonomic nervous system.	Heart rate response to exercise	up to 35,455 European ancestry females, up to 31,802 European ancestry males	NA	5q23.2	NR	rs6595376-A	0.693	9E-11	(females)	0.614	[0.43-0.8] bpm increase	Affymetrix [~ 7800000] (imputed)	N
1514	chr5	121868932	121868933	rs6595376	29769521	Ramirez J	2018-05-16	Nat Commun	Thirty loci identified for heart rate response to exercise and recovery implicate autonomic nervous system.	Heart rate response to exercise	up to 35,455 European ancestry females, up to 31,802 European ancestry males	NA	5q23.2	NR	rs6595376-A	0.693	4E-12	(males)	0.627	[0.45-0.8] bpm increase	Affymetrix [~ 7800000] (imputed)	N
1514	chr5	121869309	121869310	rs1993875	29769521	Ramirez J	2018-05-16	Nat Commun	Thirty loci identified for heart rate response to exercise and recovery implicate autonomic nervous system.	Heart rate response to recovery post exercise	up to 35,455 European ancestry females, up to 31,802 European ancestry males	NA	5q23.2	SNCA1P	rs1993875-G	0.697	1E-8		0.338	[0.22-0.45] bpm increase	Affymetrix [~ 7800000] (imputed)	N
1515	chr5	121918207	121918208	rs7712513	26460308	Ghesquieres H	2015-10-12	J Clin Oncol	Genome-Wide Association Study of Event-Free Survival in Diffuse Large B-Cell Lymphoma Treated With Immunochemotherapy.	Event free survival in diffuse large B-cell lymphoma treated with immunochemotherapy	852 European ancestry cases	685 European ancestry cases	5q23.2	ARGFXP1, SNCAIP, SNX2	rs7712513-C	0.35	2E-7		1.39	[1.23-1.57]	Illumina [> 552942] (imputed)	N
1515	chr5	121996521	121996522	rs17440304	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	5q23.2	NR	rs17440304-?	NR	2E-7				Affymetrix [NR]	N
1515	chr5	122006324	122006325	rs13180735	33693626	Jamieson SE	2021-03-09	Clin Infect Dis	Common and rare genetic variants that could contribute to severe otitis media in an Australian Aboriginal population.	Otitis media	21 Martu ancestry cases, 370 Martu ancestry controls	NA	5q23.2		rs13180735-G	0.16	5E-6				Illumina [6724284] (imputed)	N
1516	chr5	122030710	122030711	rs7709626	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 45)	19,670 European ancestry individuals	NA	5q23.2		rs7709626-?	NR	9E-10				NR [9705931] (imputed)	N
1516	chr5	122030710	122030711	rs7709626	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	5q23.2	RP11-166A12.1	rs7709626-A	0.3665	8E-6		0.0315	[0.018-0.045] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1516	chr5	122043333	122043333	rs34199803	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	5q23.2		rs34199803-CTT	NR	6E-11		0.016	[0.011-0.021] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
1516	chr5	122052134	122052135	rs7731542	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	5q23.2		rs7731542-?	NR	7E-13				NR [~ 8900000] (imputed)	N
1516	chr5	122060451	122060452	rs149197958	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Lateral ventricle temporal horn volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	5q23.2	LOC101927379	rs149197958-?		6E-6				Illumina [4322238] (imputed)	N
1516	chr5	122093739	122093740	rs6878780	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	5q23.2	NR	rs6878780-C	0.425947	1E-11		0.015095364	[0.011-0.019] unit increase	Affymetrix [93095623] (imputed)	N
1516	chr5	122093739	122093740	rs6878780	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	5q23.2		rs6878780-C	0.425945	3E-10		0.014160574	[0.0098-0.0185] unit increase	Affymetrix [93095623] (imputed)	N
1516	chr5	122093739	122093740	rs6878780	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	5q23.2	NR	rs6878780-C	0.426457	6E-12		0.013346	[0.0095-0.0171] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
1516	chr5	122093739	122093740	rs6878780	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	5q23.2		rs6878780-?	NR	4E-13				NR [~ 8900000] (imputed)	N
1516	chr5	122097933	122097933	rs575412908	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta maximum area	31,908 individuals	NA	5q23.2		rs575412908-C	0.641284	5E-10		0.0477324	[0.032-0.063] increase	Affymetrix [NR]	N
1516	chr5	122116270	122116271	rs4836245	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q23.2	NR	rs4836245-T	0.566955	8E-11				Affymetrix, Illumina [24649327] (imputed)	N
1516	chr5	122126903	122126904	rs7706555	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	5q23.2		rs7706555-C	NR	7E-13		0.0154	[0.011-0.02] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
1516	chr5	122145780	122145781	rs6892249	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	5q23.2	NR	rs6892249-T	0.559023	1E-10		0.012405	[0.0086-0.0162] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1516	chr5	122159047	122159048	rs11367864	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	5q23.2	SNX2	rs11367864-A	0.558736	2E-31		0.02647388	[0.022-0.031] unit increase	Affymetrix [93095623] (imputed)	N
1517	chr5	122161637	122161638	rs3213794	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q23.2	NR	rs3213794-A	0.434641	9E-33				Affymetrix, Illumina [17210439] (imputed)	N
1517	chr5	122184758	122184759	rs13172043	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	5q23.2	NR	rs13172043-G	0.441673	3E-34		0.023511	[0.02-0.027] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
1517	chr5	122199195	122199196	rs2438150	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q23.2	NR	rs2438150-T	0.575125	2E-10				Affymetrix, Illumina [23114412] (imputed)	N
1517	chr5	122199195	122199196	rs2438150	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	5q23.2	SNX24	rs2438150-T	0.5533	2E-13		0.02728887	[0.02-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
1517	chr5	122201033	122201035	rs10577090	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	5q23.2	SNX24	rs10577090-T	0.558691	4E-28		0.024778761	[0.02-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1517	chr5	122230678	122230678	rs775450784	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	5q23.2	NR	rs775450784-D	0.381027	6E-13		0.015156	[0.011-0.019] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
1517	chr5	122253303	122253304	rs193541	25524916	Palmer ND	2014-12-18	Diabetes	Genetic Variants Associated With Quantitative Glucose Homeostasis Traits Translate to Type 2 Diabetes in Mexican Americans: The GUARDIAN (Genetics Underlying Diabetes in Hispanics) Consortium.	Glucose homeostasis traits	up to 4,176 Mexican American individuals	NA	5q23.2	SNX24	rs193541-?		8E-6	(AIRg)	1.71	[0.85-2.57] unit decrease	Illumina [693128]	N
1517	chr5	122253601	122253602	rs1993876	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	5q23.2	SNX2, SNX24, PPIC	rs1993876-?		4E-10				NR [7428630] (imputed)	N
1517	chr5	122264735	122264736	rs2447820	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NA	5q23.2	intergenic	rs2447820-T	0.1	4E-6		1.09	[1.05-1.13]	Affymetrix, Illumina [~ 2300000] (imputed)	N
1518	chr5	122301675	122301676	rs39819	34957435	Bonfiglio F	2021-12-08	Cell Genom	GWAS of stool frequency provides insights into gastrointestinal motility and irritable bowel syndrome.	Stool frequency	167,875 European ancestry individuals	NA	5q23.2		rs39819-A	0.671	1E-9		0.018	[0.012-0.024] unit increase	Affymetrix, Illumina [8817117] (imputed)	N
1518	chr5	122329728	122329729	rs34126945	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	5q23.2	PPIC	rs34126945-G	0.334946301480191	6E-8		0.0030812	[NR] unit decrease	Affymetrix [> 30000000] (imputed)	N
1518	chr5	122331221	122331222	rs445841	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	5q23.2	SNX24	rs445841-G	0.629109	5E-8		0.0108013	[0.0069-0.0147] unit increase	Affymetrix [NR] (imputed)	N
1518	chr5	122369013	122369014	rs35128692	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta minimum area	35,110 individuals	NA	5q23.2		rs35128692-G	0.647119	3E-9		0.0421829	[0.028-0.056] increase	Affymetrix [NR]	N
1518	chr5	122374458	122374459	rs7712401	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	5q23.2	RP11-359P5.1	rs7712401-T	0.538	5E-10		0.02264376	[0.016-0.03] unit increase	Affymetrix [~ 2500000] (imputed)	N
1519	chr5	122434665	122434666	rs2546343	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	5q23.2	PRDM6	rs2546343-T	0.647	7E-7		0.034	[0.02-0.048] unit decrease	Affymetrix [7947838] (imputed)	N
1519	chr5	122435626	122435627	rs1008058	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Systolic blood pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	5q23.2	PRDM6	rs1008058-A	0.1325	3E-9		0.504	mmHg increase	Illumina [242296]	N
1519	chr5	122435626	122435627	rs1008058	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Pulse pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	5q23.2	PRDM6	rs1008058-A	0.1281	9E-6		0.26	[0.14-0.38] mmHg increase	Illumina [242296]	N
1519	chr5	122435626	122435627	rs1008058	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Diastolic blood pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	5q23.2	PRDM6	rs1008058-A	0.1287	7E-6		0.2341	[0.13-0.34] mmHg increase	Illumina [242296]	N
1519	chr5	122446618	122446619	rs151283	29497042	Verweij N	2018-03-01	Nat Commun	Genetic study links components of the autonomous nervous system to heart-rate profile during exercise.	Heart rate response to recovery post exercise (50 sec)	5,4137 European ancestry individuals, 1,744 Asian individuals, 1,445 African individuals, 468 admixed individuals, 1,024 individuals	NA	5q23.2	PRDM6	rs151283-C	0.715914	2E-10		0.0416791	[0.029-0.054] unit increase	Affymetrix [509255] (imputed)	N
1519	chr5	122446618	122446619	rs151283	29497042	Verweij N	2018-03-01	Nat Commun	Genetic study links components of the autonomous nervous system to heart-rate profile during exercise.	Heart rate response to recovery post exercise (40 sec)	5,4137 European ancestry individuals, 1,744 Asian individuals, 1,445 African individuals, 468 admixed individuals, 1,024 individuals	NA	5q23.2	PRDM6	rs151283-C	0.715927	2E-9		0.0389041	[0.026-0.052] unit increase	Affymetrix [509255] (imputed)	N
1519	chr5	122453144	122453145	rs555625	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	5q23.2	PRDM6	rs555625-C	0.9023	8E-10		0.3617	[0.25-0.48] mmHg increase	Affymetrix [NR] (imputed)	N
1519	chr5	122454304	122454305	rs186749	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		5q23.2	PRDM6	rs186749-G	NR	5E-11		0.0423865	NR unit increase	NR [NR] (imputed)	N
1519	chr5	122454304	122454305	rs186749	25342443	Lindstrom S	2014-10-24	Nat Commun	Genome-wide association study identifies multiple loci associated with both mammographic density and breast cancer risk.	Percent mammographic density	7,916 European ancestry individuals	343 European ancestry individuals, 1,472 Old Order Amish individuals, 8,564 individuals	5q23.2	PRDM6	rs186749-A	0.28	3E-9		0.1	[0.061-0.139] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1519	chr5	122454304	122454305	rs186749	25342443	Lindstrom S	2014-10-24	Nat Commun	Genome-wide association study identifies multiple loci associated with both mammographic density and breast cancer risk.	Mammographic density (dense area)	7,600 European ancestry individuals	343 European ancestry individuals, 1,472 Old Order Amish individuals, 8,564 individuals	5q23.2	PRDM6	rs186749-A	0.28	3E-7				Affymetrix, Illumina [~ 2500000] (imputed)	N
1519	chr5	122456097	122456098	rs17149944	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atrial fibrillation/atrial flutter	29,212 European ancestry cases, 400,539 European ancestry controls, 4,150 East Asian ancestry cases, 155,540 East Asian ancestry controls	NA	5q23.2		rs17149944-A	NR	1E-8		0.0682	[0.045-0.092] unit increase	Affymetrix, Illumina [25830072] (imputed)	N
1519	chr5	122457124	122457125	rs74661587	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	5q23.2		rs74661587-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1519	chr5	122467416	122467417	rs1422278	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls	NA	5q23.2	PRDM6	rs1422278-T	0.131748	1E-10		0.07595564	[0.053-0.099] unit increase	Affymetrix [7288503] (imputed)	N
1519	chr5	122467416	122467417	rs1422278	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	5q23.2	PRDM6	rs1422278-T	0.131869	1E-9		0.053985	[0.037-0.071] unit increase	Affymetrix [7288503] (imputed)	N
1519	chr5	122470208	122470209	rs1422279	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	5q23.2		rs1422279-?	NR	1E-20				NR [~ 8900000] (imputed)	N
1519	chr5	122476456	122476457	rs13359291	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	5q23.2	PRDM6	rs13359291-G		4E-6		0.331	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1519	chr5	122476456	122476457	rs13359291	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	5q23.2	PRDM6	rs13359291-G		2E-12		0.36	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1519	chr5	122476456	122476457	rs13359291	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	5q23.2	PRDM6	rs13359291-G		5E-6		0.155	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1519	chr5	122476456	122476457	rs13359291	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	5q23.2	PRDM6	rs13359291-G		2E-10		0.2	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1519	chr5	122476456	122476457	rs13359291	26390057	Kato N	2015-09-21	Nat Genet	Trans-ancestry genome-wide association study identifies 12 genetic loci influencing blood pressure and implicates a role for DNA methylation.	Systolic blood pressure	31,516 East Asian ancestry individuals,  35,352 European ancestry individuals, 33,126 South Asian ancestry individuals	87,205 individuals, 48,268 East Asian ancestry individuals, 68,456 European ancestry individuals and 16,328 South Asian ancestry individuals	5q23.2	PRDM6	rs13359291-A	0.31	9E-16		0.53405005	[0.4-0.66] mmHg increase	Affymetrix, Illumina, Perlegen [2127883] (imputed)	N
1519	chr5	122478001	122478001	rs10629804	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	5q23.2	NR	rs10629804-GCTTCA	0.7425	1E-6	(EA)	0.0345	[0.021-0.048] unit decrease	Illumina [~ 11800000] (imputed)	N
1519	chr5	122481429	122481431	rs36032862	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	5q23.2		rs36032862-A	NR	4E-15		0.0151	[0.011-0.019] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1519	chr5	122481927	122481928	rs335171	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	5q23.2		rs335171-?	NR	1E-34				NR [~ 8900000] (imputed)	N
1519	chr5	122482972	122482973	rs6886162	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	5q23.2		rs6886162-G	NR	9E-11		0.0212	[0.015-0.028] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
1519	chr5	122490488	122490489	rs509256	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	5q23.2	NR	rs509256-C	0.243814	3E-23		0.0364667	[0.029-0.044] unit decrease	NR [19129689] (imputed)	N
1519	chr5	122496031	122496032	rs7716050	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	5q23.2		rs7716050-G	NR	2E-8		0.0595	[0.039-0.08] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1519	chr5	122499966	122499967	rs335214	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5q23.2	PRDM6	rs335214-A	0.523732	9E-14	(24 ms)	0.0417671	[0.031-0.053] unit increase	Affymetrix [10000000] (imputed)	N
1519	chr5	122499966	122499967	rs335214	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5q23.2	PRDM6	rs335214-A	0.523732	8E-13	(28 ms)	0.0403229	[0.029-0.051] unit increase	Affymetrix [10000000] (imputed)	N
1519	chr5	122499966	122499967	rs335214	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5q23.2	PRDM6	rs335214-A	0.523732	8E-12	(12 ms)	0.037148	[0.026-0.048] unit increase	Affymetrix [10000000] (imputed)	N
1519	chr5	122499966	122499967	rs335214	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5q23.2	PRDM6	rs335214-A	0.523732	7E-13	(30 ms)	0.040036	[0.029-0.051] unit increase	Affymetrix [10000000] (imputed)	N
1519	chr5	122499966	122499967	rs335214	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5q23.2	PRDM6	rs335214-A	0.523732	6E-14	(18 ms)	0.0417671	[0.031-0.053] unit increase	Affymetrix [10000000] (imputed)	N
1519	chr5	122499966	122499967	rs335214	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5q23.2	PRDM6	rs335214-A	0.523732	4E-14	(22 ms)	0.0429376	[0.032-0.054] unit increase	Affymetrix [10000000] (imputed)	N
1519	chr5	122499966	122499967	rs335214	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5q23.2	PRDM6	rs335214-A	0.523732	4E-12	(34 ms)	0.0384399	[0.027-0.049] unit increase	Affymetrix [10000000] (imputed)	N
1519	chr5	122499966	122499967	rs335214	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5q23.2	PRDM6	rs335214-A	0.523732	2E-13	(26 ms)	0.0409663	[0.03-0.052] unit increase	Affymetrix [10000000] (imputed)	N
1519	chr5	122499966	122499967	rs335214	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5q23.2	PRDM6	rs335214-A	0.523732	2E-13	(16 ms)	0.040327	[0.029-0.051] unit increase	Affymetrix [10000000] (imputed)	N
1519	chr5	122499966	122499967	rs335214	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5q23.2	PRDM6	rs335214-A	0.523732	1E-13	(20 ms)	0.0423234	[0.031-0.053] unit increase	Affymetrix [10000000] (imputed)	N
1519	chr5	122499966	122499967	rs335214	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5q23.2	PRDM6	rs335214-A	0.523732	1E-12	(14 ms)	0.0386154	[0.028-0.05] unit increase	Affymetrix [10000000] (imputed)	N
1519	chr5	122501418	122501419	rs72787559	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	5q23.2	NR	rs72787559-T	0.124251	3E-17		0.0405384	[0.031-0.05] unit increase	NR [19129689] (imputed)	N
1519	chr5	122504565	122504566	rs335206	25035420	Hong KW	2014-07-17	Hum Mol Genet	Identification of three novel genetic variations associated with electrocardiographic traits (QRS duration and PR interval) in East Asians.	QRS duration	6,085 Korean ancestry individuals	7,295 Japanese ancestry individuals	5q23.2	PRDM6	rs335206-T	0.33	3E-10		0.66	[NR] unit decrease	Affymetrix [2100000] (imputed)	N
1519	chr5	122510128	122510129	rs335200	30319691	Liu C	2018-09-24	Front Genet	Genome-Wide Association and Mechanistic Studies Indicate That Immune Response Contributes to Alzheimer's Disease Development.	Cerebrospinal fluid t-tau:AB1-42 ratio	235 early mild cognitive impairment cases, 249 late mild cognitive impairment cases, 47 Alzheimer's disease cases, 281 controls.	NA	5q23.2	Intergenic	rs335200-?		6E-7		0.08919756	[NR] unit decrease	Illumina [575353]	N
1519	chr5	122510128	122510129	rs335200	30319691	Liu C	2018-09-24	Front Genet	Genome-Wide Association and Mechanistic Studies Indicate That Immune Response Contributes to Alzheimer's Disease Development.	Cerebrospinal fluid p-Tau181p:AB1-42 ratio	235 early mild cognitive impairment cases, 249 late mild cognitive impairment cases, 47 Alzheimer's disease cases, 281 controls.	NA	5q23.2	Intergenic	rs335200-?		6E-7		0.009619566	[NR] unit decrease	Illumina [575353]	N
1519	chr5	122514119	122514120	rs335178	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	L1-L4 bone mineral density x serum urate levels interaction	2,207 men, 2,354 women	NA		PRDM6	rs335178-?	NR	1E-5	(male)	0.371523	[NR] unit increase	Affymetrix [NR] (imputed)	N
1519	chr5	122519612	122519613	rs9327287	32602732	Baldassari AR	2020-06-30	Circ Genom Precis Med	Multi-ethnic Genome-wide Association Study of Decomposed Cardioelectric Phenotypes Illustrates Strategies to Identify and Characterize Evidence of Shared Genetic Effects for Complex Traits.	Electrocardiographic traits (multivariate)	17,873 European ancestry individuals, 12,749 Hispanic individuals, 5,408 African American individuals, 315 Chinese-American individuals	NA	5q23.2	PRDM6	rs9327287-?	NR	3E-7				Affymetrix, Illumina [22000000] (imputed)	N
1519	chr5	122528419	122528420	rs17469907	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta maximum area	31,908 individuals	NA	5q23.2		rs17469907-A	0.727495	8E-14		0.0610183	[0.045-0.077] decrease	Affymetrix [NR]	N
1519	chr5	122531346	122531347	rs17470137	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta minimum area	35,110 individuals	NA	5q23.2		rs17470137-G	0.728624	5E-19		0.0709906	[0.056-0.086] decrease	Affymetrix [NR]	N
1519	chr5	122531346	122531347	rs17470137	19584346	Vasan RS	2009-07-08	JAMA	Genetic variants associated with cardiac structure and function: a meta-analysis and replication of genome-wide association data.	Aortic root size	12,612 European ancestry individuals	4,094 European ancestry individuals	5q23.2	CCDC100, PPIC	rs17470137-A	0.29	1E-11		0.03	[0.02-0.04] cm increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1519	chr5	122546509	122546510	rs337100	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Pulse pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	5q23.2	intergenic	rs337100-A	0.406	5E-9	(EA, initial)	0.277	[0.18-0.37] unit decrease	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
1519	chr5	122546509	122546510	rs337100	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Pulse pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	5q23.2	intergenic	rs337100-A	0.406	3E-8		0.178	[0.12-0.24] unit decrease	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
1520	chr5	122609852	122609853	rs77097530	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	5q23.2		rs77097530-G	0.07	4E-26		10.58	z score increase	Affymetrix [9061022] (imputed)	N
1520	chr5	122609852	122609853	rs77097530	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	5q23.2		rs77097530-G	0.07	3E-11		6.67	z score increase	Affymetrix [9061022] (imputed)	N
1520	chr5	122615523	122615524	rs6881280	23817569	Hinds DA	2013-06-30	Nat Genet	A genome-wide association meta-analysis of self-reported allergy identifies shared and allergy-specific susceptibility loci.	Self-reported allergy	53,862 European ancestry individuals	NA	5q23.2	intergenic	rs6881280-G	0.0691	2E-6		0.1157	[0.068-0.164] unit increase	Illumina [2400000] (imputed)	N
1520	chr5	122650050	122650050	rs11437038	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	145,445 East Asian ancestry individuals	NA	5q23.2		rs11437038-GA	0.412845	9E-10		0.0214445	[0.015-0.028] unit decrease	Illumina [13477769] (imputed)	N
1520	chr5	122650884	122650885	rs144052331	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	5q23.2	NR	rs144052331-C	0.0539	4E-13		0.0709	[0.052-0.09] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1520	chr5	122652105	122652106	rs4308481	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	5q23.2		rs4308481-T	NR	7E-18		0.0164	[0.013-0.02] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1520	chr5	122652105	122652106	rs4308481	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	163,835 East Asian ancestry individuals	NA	5q23.2		rs4308481-T	0.523018	7E-9		0.0188313	[0.012-0.025] unit decrease	Illumina [13479178] (imputed)	N
1520	chr5	122652105	122652106	rs4308481	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	5q23.2	NR	rs4308481-?	NR	3E-12				Affymetrix [~ 8270000] (imputed)	N
1520	chr5	122652105	122652106	rs4308481	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	5q23.2	PRDM6, CEP120	rs4308481-T	0.49	1E-8	(Japanese)	0.021	[0.013-0.029] unit decrease	Illumina [6108953] (imputed)	N
1520	chr5	122652913	122652914	rs200525873	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	5q23.2		rs200525873-G	0.076918548	5E-9		0.90745986	[0.878413444-0.937466738]	Illumina [8919992] (imputed)	N
1520	chr5	122657198	122657199	rs1582931	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		5q23.2	CEP120	rs1582931-G	0.526852	3E-12		0.00965729	[0.0069-0.0124] unit increase	Affymetrix [12370749]	N
1520	chr5	122657198	122657199	rs1582931	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	5q23.2		rs1582931-?	NR	6E-13				NR [~ 8900000] (imputed)	N
1520	chr5	122657198	122657199	rs1582931	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	5q23.2	NA	rs1582931-A	0.4745	2E-13		0.0126	[0.0093-0.0159] unit decrease	NR [~ 27400000] (imputed)	N
1520	chr5	122657198	122657199	rs1582931	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	5q23.2	NR	rs1582931-G	NR	9E-8		0.015	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
1520	chr5	122657198	122657199	rs1582931	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	5q23.2	PRDM6, CEP120	rs1582931-A	0.53	5E-9		0.015	[0.0091-0.0209] unit decrease	Illumina [6108953] (imputed)	N
1520	chr5	122657198	122657199	rs1582931	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	5q23.2	CEP120	rs1582931-A	0.47	2E-10		0.023	[NR] unit decrease	Affymetrix, Illumina [2834208] (imputed)	N
1520	chr5	122659995	122659996	rs9784689	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Pulse pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 Japanese ancestry individuals	5q23.2	NR	rs9784689-A	0.4168	3E-11	(East Asian)	0.2838	[0.2-0.37] unit decrease	Illumina [6200000] (imputed)	N
1520	chr5	122665464	122665465	rs112446794	30677029	Riveros-McKay F	2019-01-24	PLoS Genet	Genetic architecture of human thinness compared to severe obesity.	Obesity (extreme)	1,456 British ancestry obese children, 6,460 European ancestry control adults	up to 7,526 British ancestry obese individuals, at least 4,405 obese individuals, up to 20,720 British ancestry controls, 61,166 controls	5q23.2	CEP120	rs112446794-T	0.286928	3E-10		1.09	[1.06-1.13]	Illumina [~ 41266535] (imputed)	N
1520	chr5	122673621	122673622	rs2081914	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	5q23.2	CEP120	rs2081914-C	0.5164	6E-8		0.0346	[0.022-0.047] unit increase	NR [8041861] (imputed)	N
1520	chr5	122674562	122674563	rs75887402	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	5q23.2	NR	rs75887402-C	0.0305	3E-7	(EA)	0.0919	[0.057-0.127] unit increase	Illumina [~ 11800000] (imputed)	N
1520	chr5	122676524	122676525	rs7708474	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	5q23.2	CEP120	rs7708474-T	0.67	5E-9		0.022	[0.01-0.034] unit increase	Affymetrix, Illumina [2704730] (imputed)	N
1520	chr5	122677607	122677610	rs34824900	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	5q23.2		rs34824900-T	NR	4E-24		0.0196	[0.016-0.023] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
1520	chr5	122682333	122682334	rs2303720	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	5q23.2		rs2303720-?	0.084	3E-9		0.9226194	[0.898491559706878-0.947395208192873]	Illumina [8919992] (imputed)	N
1521	chr5	122685127	122685128	rs2115172	19079260	Thorleifsson G	2008-12-14	Nat Genet	Genome-wide association yields new sequence variants at seven loci that associate with measures of obesity.	Weight	72,598 European ancestry individuals, 1,160 African American individuals	Up to 11,036 European ancestry individuals, 32,615 individuals	5q23.2	NR	rs2115172-A	0.57	2E-6		2.71	[1.59-3.83] percentage SD increase	Illumina [305846]	N
1521	chr5	122690888	122690889	rs28891214	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	5q23.2	CEP120	rs28891214-T	0.2931	3E-21		0.254	[0.2-0.31] mmHg increase	Affymetrix [NR] (imputed)	N
1521	chr5	122697430	122697431	rs17473412	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	5q23.2	NR	rs17473412-T	0.2345	1E-8		0.0379	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
1521	chr5	122699198	122699198	rs34732995	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	5q23.2		rs34732995-CTA	NR	4E-44		0.023	[0.02-0.026] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1521	chr5	122699198	122699198	rs34732995	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	5q23.2		rs34732995-CTA	NR	2E-40		0.0171	[0.015-0.02] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1521	chr5	122699198	122699198	rs34732995	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	5q23.2	CEP120	rs34732995-CTA	0.4619	2E-55		0.0296	[0.026-0.033] unit decrease	Affymetrix [18391927] (imputed)	N
1521	chr5	122699198	122699198	rs34732995	32060260	Campos AI	2020-02-14	Nat Commun	Insights into the aetiology of snoring from observational and genetic investigations in the UK Biobank.	Snoring	61,792 British ancestry female cases, 156,554 British ancestry female controls	NA	5q23.2	NR	rs34732995-C	NR	4E-6		0.006248	[0.0036-0.0089] unit increase	NR [11010159] (imputed)	N
1521	chr5	122699198	122699198	rs34732995	32060260	Campos AI	2020-02-14	Nat Commun	Insights into the aetiology of snoring from observational and genetic investigations in the UK Biobank.	Snoring	152,302 British ancestry cases, 256,015 British ancestry controls	NA	5q23.2	NR	rs34732995-C	NR	2E-8		0.00582338	[0.0038-0.0079] unit increase	NR [11010159] (imputed)	N
1521	chr5	122699424	122699425	rs9327293	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	5q23.2		rs9327293-T	0.26	1E-20		9.32	z score increase	Affymetrix [9061022] (imputed)	N
1521	chr5	122704648	122704649	rs1428388	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	5q23.2	NR	rs1428388-C	0.288	1E-17				NR [9056863] (imputed)	N
1521	chr5	122716818	122716819	rs9327294	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	5q23.2		rs9327294-A	0.556612	1E-14		0.0155393	[0.012-0.019] unit decrease	Illumina [13479295] (imputed)	N
1521	chr5	122716818	122716819	rs9327294	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	5q23.2	CEP120	rs9327294-?	NR	9E-15		0.022162404	[0.017-0.028] unit decrease	Illumina [27896057] (imputed)	N
1521	chr5	122718735	122718736	rs6595440	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	5q23.2		rs6595440-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1521	chr5	122727818	122727819	rs11241692	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	5q23.2	NR	rs11241692-C	0.439231	4E-9		0.055955	[0.037-0.075] unit decrease	Affymetrix [21375087] (imputed)	N
1521	chr5	122732235	122732236	rs10051787	26785701	Wen W	2016-01-20	Sci Rep	Genome-wide association studies in East Asians identify new loci for waist-hip ratio and waist circumference.	Waist circumference	up to 44,609 East Asian individuals	up to 25,553 East Asian individuals, up to 230,044 individuals	5q23.2	CEP120	rs10051787-T	0.404	7E-12	(East Asian)	0.04	[0.028-0.052] unit increase	Affymetrix, Illumina [at least 1850000] (imputed)	N
1521	chr5	122732235	122732236	rs10051787	26785701	Wen W	2016-01-20	Sci Rep	Genome-wide association studies in East Asians identify new loci for waist-hip ratio and waist circumference.	Waist circumference	up to 44,609 East Asian individuals	up to 25,553 East Asian individuals, up to 230,044 individuals	5q23.2	CEP120	rs10051787-T	0.40362745368171016	5E-8	(East Asian women)	0.03823	[0.024-0.052] unit increase	Affymetrix, Illumina [at least 1850000] (imputed)	N
1521	chr5	122732235	122732236	rs10051787	26785701	Wen W	2016-01-20	Sci Rep	Genome-wide association studies in East Asians identify new loci for waist-hip ratio and waist circumference.	Waist circumference	up to 44,609 East Asian individuals	up to 25,553 East Asian individuals, up to 230,044 individuals	5q23.2	CEP120	rs10051787-T	0.40362745368171016	4E-6	(East Asian men)	0.04595	[0.026-0.066] unit increase	Affymetrix, Illumina [at least 1850000] (imputed)	N
1521	chr5	122732341	122732342	rs17474406	31194737	Johnston KJA	2019-06-13	PLoS Genet	Genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	387,649 British ancestry individuals	NA	5q23.2	CEP120	rs17474406-G	0.01805	2E-8		0.0492	[0.032-0.066] unit decrease	NR [NR]	N
1521	chr5	122737439	122737440	rs71574104	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	5q23.2		rs71574104-C	0.548912	2E-18		0.0239081	[0.019-0.029] unit decrease	Illumina [13479924] (imputed)	N
1521	chr5	122740920	122740921	rs1864046	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	5q23.2		rs1864046-?	NR	4E-11				NR [~ 8900000] (imputed)	N
1521	chr5	122741745	122741746	rs11948639	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	5q23.2	NR	rs11948639-T	0.43432000000000004	3E-9		0.017095	[0.012-0.023] unit increase	Affymetrix [16580851] (imputed)	N
1521	chr5	122743324	122743325	rs6595443	30213928	Went M	2018-09-13	Nat Commun	Identification of multiple risk loci and regulatory mechanisms influencing susceptibility to multiple myeloma.	Multiple myeloma	8,197 European ancestry cases, 241,468 European ancestry controls	1,777 European ancestry cases, 6,088 European ancestry controls	5q23.2	NR	rs6595443-T	0.43	1E-8		1.11		Illumina [up to 10291845] (imputed)	N
1521	chr5	122744004	122744005	rs6862676	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	5q23.2	NR	rs6862676-?	NR	7E-8	(female)	0.13136	[0.084-0.179] unit decrease	Affymetrix [7794483] (imputed)	N
1521	chr5	122744004	122744005	rs6862676	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	5q23.2	NR	rs6862676-?	NR	5E-10	(male)	0.21875	[0.15-0.29] unit decrease	Affymetrix [7794483] (imputed)	N
1521	chr5	122744004	122744005	rs6862676	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	5q23.2	NR	rs6862676-?	NR	2E-15		0.17743	[0.13-0.22] unit decrease	Affymetrix [7794483] (imputed)	N
1521	chr5	122750846	122750847	rs6595447	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	5q23.2	NR	rs6595447-T	0.80729	1E-12		0.0103563	[0.0075-0.0132] unit increase	Affymetrix [16582621] (imputed)	N
1521	chr5	122750846	122750847	rs6595447	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	5q23.2	NR	rs6595447-T	0.80729	3E-7		0.00823841	[0.0052-0.0113] unit increase	Affymetrix [16582614] (imputed)	N
1521	chr5	122752990	122752991	rs34768912	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	5q23.2		rs34768912-C	NR	2E-9		0.0134	[0.0091-0.0177] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
1521	chr5	122755561	122755562	rs7706662	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5q23.2		rs7706662-?	NR	4E-45				NR [~ 8900000] (imputed)	N
1521	chr5	122759861	122759862	rs11241696	26584805	Dorajoo R	2015-11-19	Genes Nutr	A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.	Plasma omega-3 polyunsaturated fatty acid levels (alphalinolenic acid)	717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls	NA	5q23.2	NR	rs11241696-T	0.6866846	4E-6		0.0884	[0.051-0.126] unit decrease	Illumina [up to 1980188] (imputed)	N
1521	chr5	122763203	122763204	rs11241697	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	5q23.2	NR	rs11241697-C	0.416326	8E-19		0.0611498	[0.048-0.075] unit decrease	Affymetrix [17914406] (imputed)	N
1521	chr5	122769295	122769296	rs13165542	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	5q23.2	NR	rs13165542-T	0.823599	7E-13		0.00757355	[0.0054-0.0097] unit increase	Affymetrix [16582909] (imputed)	N
1521	chr5	122769295	122769296	rs13165542	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	5q23.2	NR	rs13165542-T	0.823599	2E-6		0.00606357	[0.0037-0.0085] unit increase	Affymetrix [16582965] (imputed)	N
1521	chr5	122774784	122774785	rs7705033	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue/subcutaneous adipose tissue ratio	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	5q23.2	CCDC100	rs7705033-G	0.72	2E-6	(overall)			Affymetrix, Illumina [2500000] (imputed)	N
1521	chr5	122789251	122789252	rs62377770	29535370	Kleinstein SE	2018-02-28	Genes Immun	Genome-wide association study (GWAS) of human host factors influencing viral severity of herpes simplex virus type 2 (HSV-2).	Virologic severity in Herpes simplex virus type 2 infection	223 European ancestry individuals	NA	5q23.2	CEP120, CSNK1G3	rs62377770-?	NR	4E-7				Illumina [1539908]	N
1522	chr5	122817252	122817253	rs13178545	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	5q23.2	NR	rs13178545-C	NR	8E-13		0.0219	[0.016-0.028] unit decrease	Affymetrix [9000000] (imputed)	N
1522	chr5	122824677	122824678	rs1500187	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	5q23.2		rs1500187-G	NR	6E-23		0.0209	[0.017-0.025] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
1522	chr5	122827952	122827953	rs1500188	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in IDL	115,082 European ancestry individuals	NA	5q23.2		rs1500188-A	0.549596	2E-9		0.0240208	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
1522	chr5	122827952	122827953	rs1500188	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total free cholesterol levels	115,082 European ancestry individuals	NA	5q23.2		rs1500188-A	0.549596	2E-9		0.0242911	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
1522	chr5	122827952	122827953	rs1500188	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol minus HDL-C levels	115,082 European ancestry individuals	NA	5q23.2		rs1500188-A	0.549596	2E-9		0.024817	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
1522	chr5	122827952	122827953	rs1500188	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Remnant cholesterol (non-HDL, non-LDL -cholesterol)	115,082 European ancestry individuals	NA	5q23.2		rs1500188-A	0.549596	6E-9		0.0240193	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
1522	chr5	122827952	122827953	rs1500188	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in IDL	115,082 European ancestry individuals	NA	5q23.2		rs1500188-A	0.549596	2E-9		0.0240505	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
1522	chr5	122827952	122827953	rs1500188	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large LDL particles	115,082 European ancestry individuals	NA	5q23.2		rs1500188-A	0.549596	9E-9		0.0238319	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
1522	chr5	122827952	122827953	rs1500188	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very small VLDL	115,082 European ancestry individuals	NA	5q23.2		rs1500188-A	0.549596	8E-9		0.0231118	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
1522	chr5	122827952	122827953	rs1500188	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium VLDL	115,082 European ancestry individuals	NA	5q23.2		rs1500188-A	0.549596	1E-9		0.0250611	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
1522	chr5	122827952	122827953	rs1500188	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	5q23.2		rs1500188-A	0.549596	3E-8		0.0222319	[0.014-0.03] unit increase	NR [11722792] (imputed)	N
1522	chr5	122827952	122827953	rs1500188	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	5q23.2		rs1500188-A	0.549596	4E-9		0.0244146	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
1522	chr5	122831980	122831981	rs7703751	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	5q23.2	CSNK1G3	rs7703751-A	0.740934	3E-30		0.0241818	[0.02-0.028] unit increase	NR [13737936] (imputed)	N
1522	chr5	122831980	122831981	rs7703751	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	5q23.2		rs7703751-?	NR	9E-34				NR [~ 8900000] (imputed)	N
1522	chr5	122832288	122832289	rs7704651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium LDL	115,082 European ancestry individuals	NA	5q23.2		rs7704651-G	0.668857	3E-8		0.0245047	[0.016-0.033] unit decrease	NR [11722792] (imputed)	N
1522	chr5	122832288	122832289	rs7704651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium VLDL	115,082 European ancestry individuals	NA	5q23.2		rs7704651-G	0.668857	3E-8		0.0243468	[0.016-0.033] unit decrease	NR [11722792] (imputed)	N
1522	chr5	122832288	122832289	rs7704651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium LDL	115,082 European ancestry individuals	NA	5q23.2		rs7704651-G	0.668857	3E-8		0.0243759	[0.016-0.033] unit decrease	NR [11722792] (imputed)	N
1522	chr5	122832288	122832289	rs7704651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	5q23.2		rs7704651-G	0.668857	2E-8		0.0248685	[0.016-0.033] unit decrease	NR [11722792] (imputed)	N
1522	chr5	122832288	122832289	rs7704651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	5q23.2		rs7704651-G	0.668857	1E-8		0.0251391	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
1522	chr5	122832288	122832289	rs7704651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium VLDL particles	115,082 European ancestry individuals	NA	5q23.2		rs7704651-G	0.668857	3E-8		0.0241994	[0.016-0.033] unit decrease	NR [11722792] (imputed)	N
1522	chr5	122832288	122832289	rs7704651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of LDL particles	115,082 European ancestry individuals	NA	5q23.2		rs7704651-G	0.668857	1E-8		0.0250725	[0.016-0.034] unit decrease	NR [11722792] (imputed)	N
1522	chr5	122832288	122832289	rs7704651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small LDL	115,082 European ancestry individuals	NA	5q23.2		rs7704651-G	0.668857	2E-8		0.0245619	[0.016-0.033] unit decrease	NR [11722792] (imputed)	N
1522	chr5	122832288	122832289	rs7704651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium LDL	115,082 European ancestry individuals	NA	5q23.2		rs7704651-G	0.668857	1E-8		0.0249532	[0.016-0.034] unit decrease	NR [11722792] (imputed)	N
1522	chr5	122832288	122832289	rs7704651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in VLDL	115,082 European ancestry individuals	NA	5q23.2		rs7704651-G	0.668857	5E-8		0.0239705	[0.015-0.033] unit decrease	NR [11722792] (imputed)	N
1522	chr5	122832288	122832289	rs7704651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small LDL	115,082 European ancestry individuals	NA	5q23.2		rs7704651-G	0.668857	2E-8		0.024739	[0.016-0.033] unit decrease	NR [11722792] (imputed)	N
1522	chr5	122832288	122832289	rs7704651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	5q23.2		rs7704651-G	0.668857	1E-8		0.0250885	[0.016-0.034] unit decrease	NR [11722792] (imputed)	N
1522	chr5	122832288	122832289	rs7704651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein B levels	115,082 European ancestry individuals	NA	5q23.2		rs7704651-G	0.668857	1E-8		0.0248561	[0.016-0.033] unit decrease	NR [11722792] (imputed)	N
1522	chr5	122832934	122832935	rs9327296	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium LDL particles	115,082 European ancestry individuals	NA	5q23.2		rs9327296-G	0.668861	2E-8		0.0246921	[0.016-0.033] unit decrease	NR [11722792] (imputed)	N
1522	chr5	122835805	122835806	rs7730594	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	5q23.2		rs7730594-G	NR	1E-17		0.0199	[0.015-0.024] unit increase	Affymetrix, Illumina [20536134] (imputed)	N
1522	chr5	122838500	122838501	rs2036321	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	5q23.2		rs2036321-?	NR	3E-13				NR [~ 8900000] (imputed)	N
1522	chr5	122846292	122846293	rs12054843	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	5q23.2	NR	rs12054843-A	NR	2E-9		0.0207	[0.014-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
1522	chr5	122847621	122847622	rs11745493	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	5q23.2	CSNK1G3	rs11745493-A	0.7475	1E-9	(European)	0.0436	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
1522	chr5	122847621	122847622	rs11745493	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	5q23.2	CSNK1G3	rs11745493-A	0.7463	8E-12		0.0445	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
1522	chr5	122848875	122848876	rs7734476	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	5q23.2	CSNK1G3	rs7734476-G	0.449923	4E-19		0.0187267	[0.015-0.023] unit decrease	Affymetrix [NR] (imputed)	N
1522	chr5	122848875	122848876	rs7734476	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	5q23.2	CSNK1G3	rs7734476-G	0.449999	2E-21		0.0198862	[0.016-0.024] unit decrease	Affymetrix [NR] (imputed)	N
1522	chr5	122848875	122848876	rs7734476	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	5q23.2	CSNK1G3	rs7734476-?	NR	2E-19		0.0231	[0.019-0.028] unit decrease	Affymetrix [5701386] (imputed)	N
1522	chr5	122850320	122850321	rs9327298	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	5q23.2		rs9327298-?	NR	5E-28		0.0253953	[0.021-0.03] unit increase	Affymetrix [20259828] (imputed)	N
1522	chr5	122855415	122855416	rs4530754	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	5q23.2	NR	rs4530754-G	NR	5E-7		0.021	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1522	chr5	122855415	122855416	rs4530754	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	5q23.2	NR	rs4530754-G	0.443	3E-6	(EA)	0.022	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1522	chr5	122855415	122855416	rs4530754	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	5q23.2	NR	rs4530754-G	NR	1E-8		0.025	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1522	chr5	122855415	122855416	rs4530754	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	5q23.2	NR	rs4530754-G	0.443	1E-7	(EA)	0.025	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1522	chr5	122855415	122855416	rs4530754	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Total cholesterol levels	32,576 East Asian ancestry individuals, 187,365 European ancestry individuals	10,855 Chinese ancestry individuals	5q23.2	CSNK1G3	rs4530754-A	0.582	2E-9	(Trans-ethnic initial)	0.0228	[0.016-0.03] unit increase (EA Beta values)	Affymetrix, Illumina [up to 1900000] (imputed)	N
1522	chr5	122855415	122855416	rs4530754	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	LDL cholesterol levels	32,285 East Asian ancestry individuals, 173,082 European ancestry individuals	8,478 Chinese ancestry individuals	5q23.2	CSNK1G3	rs4530754-A	0.582	3E-12	(Trans-ethnic initial)	0.0275	[0.02-0.035] unit increase (EA Beta value)	Affymetrix, Illumina [~ 1900000] (imputed)	N
1522	chr5	122855415	122855416	rs4530754	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Pulse pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	154,543 European ancestry individuals, 26,183 South Asian ancestry individuals	5q23.2	CSNK1G3	rs4530754-G	0.411	9E-7		0.17	[0.11-0.23] unit increase	Illumina [247039]	N
1522	chr5	122855415	122855416	rs4530754	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	5q23.2	CSNK1G3	rs4530754-G	0.46	4E-12		0.028	[NR] unit decrease	NR [NR] (imputed)	N
1522	chr5	122855415	122855416	rs4530754	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	5q23.2	CSNK1G3	rs4530754-G	0.46	2E-9		0.023	[NR] unit decrease	NR [NR] (imputed)	N
1522	chr5	122860169	122860170	rs9327301	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	5q23.2		rs9327301-?	NR	6E-28		0.0252739	[0.021-0.03] unit increase	Affymetrix [20259828] (imputed)	N
1522	chr5	122860169	122860170	rs9327301	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	5q23.2	CSNK1G3	rs9327301-G	0.742951	2E-10		0.023858	[0.016-0.031] unit increase	NR [17166351] (imputed)	N
1522	chr5	122860169	122860170	rs9327301	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	5q23.2	CSNK1G3	rs9327301-G	0.741702	3E-10	(women)	0.0330336	[0.023-0.043] unit increase	NR [17166351] (imputed)	N
1522	chr5	122890728	122890729	rs1972627	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	5q23.2	CSNK1G3	rs1972627-G	0.321234	8E-12		0.016150355	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1522	chr5	122890728	122890729	rs1972627	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q23.2	NR	rs1972627-A	0.677266	1E-10				Affymetrix, Illumina [22063850] (imputed)	N
1522	chr5	122890728	122890729	rs1972627	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	5q23.2	NR	rs1972627-A	0.67809	1E-12		0.014249	[0.01-0.018] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
1522	chr5	122900412	122900413	rs188427942	33168928	Wenric S	2020-11-10	Pharmacogenomics J	Rapid response to the alpha-1 adrenergic agent phenylephrine in the perioperative period is impacted by genomics and ancestry.	Rapid response to perioperative phenylephrine (change in systolic blood pressure)	1,082 African American individuals, 1,112 European ancestry individuals, 1,505 Hispanic individuals	NA	5q23.2	CSNK1G3	rs188427942-?		5E-8	(EA)	1.1	[0.71-1.49] unit decrease	Illumina [42246687] (imputed)	N
1522	chr5	122908467	122908468	rs6595460	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	5q23.2	NR	rs6595460-A	NR	2E-7		0.022	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1522	chr5	122908467	122908468	rs6595460	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	5q23.2	NR	rs6595460-A	0.443	2E-6	(EA)	0.022	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1522	chr5	122908467	122908468	rs6595460	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	5q23.2	NR	rs6595460-A	NR	7E-9		0.025	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1522	chr5	122908467	122908468	rs6595460	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	5q23.2	NR	rs6595460-A	0.443	6E-8	(EA)	0.026	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1522	chr5	122917859	122917860	rs7709540	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	5q23.2		rs7709540-C	NR	3E-18		0.0187	[0.015-0.023] unit increase	Affymetrix, Illumina [20521447] (imputed)	N
1522	chr5	122921102	122921103	rs1579036	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Diastolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	5q23.2	CSNK1G3	rs1579036-A	0.4303	1E-11		0.1714	[0.12-0.22] mmHg increase	Affymetrix [NR] (imputed)	N
1522	chr5	122922956	122922957	rs6876073	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Sphingomyelin levels	115,006 European ancestry individuals	NA	5q23.2		rs6876073-A	0.455386	2E-8		0.0218496	[0.014-0.029] unit decrease	NR [11722792] (imputed)	N
1522	chr5	122924863	122924864	rs1895233	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large LDL	115,082 European ancestry individuals	NA	5q23.2		rs1895233-G	0.455224	2E-9		0.0246142	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
1522	chr5	122924863	122924864	rs1895233	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in LDL	115,082 European ancestry individuals	NA	5q23.2		rs1895233-G	0.455224	6E-9		0.0241556	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
1522	chr5	122924863	122924864	rs1895233	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total esterified cholesterol levels	115,082 European ancestry individuals	NA	5q23.2		rs1895233-G	0.455224	9E-10		0.0246007	[0.017-0.032] unit decrease	NR [11722792] (imputed)	N
1522	chr5	122924863	122924864	rs1895233	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol levels	115,082 European ancestry individuals	NA	5q23.2		rs1895233-G	0.455224	1E-9		0.0246177	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
1522	chr5	122924863	122924864	rs1895233	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large LDL	115,082 European ancestry individuals	NA	5q23.2		rs1895233-G	0.455224	6E-10		0.025606	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
1522	chr5	122924863	122924864	rs1895233	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in LDL	115,082 European ancestry individuals	NA	5q23.2		rs1895233-G	0.455224	4E-9		0.024496	[0.016-0.033] unit decrease	NR [11722792] (imputed)	N
1522	chr5	122924863	122924864	rs1895233	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	LDL cholesterol levels	115,082 European ancestry individuals	NA	5q23.2		rs1895233-G	0.455224	2E-9		0.0247904	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
1522	chr5	122924863	122924864	rs1895233	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	5q23.2		rs1895233-G	0.455224	5E-9		0.0242706	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
1522	chr5	122924863	122924864	rs1895233	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large LDL	115,082 European ancestry individuals	NA	5q23.2		rs1895233-G	0.455224	8E-10		0.0251394	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
1522	chr5	122924863	122924864	rs1895233	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in LDL	115,082 European ancestry individuals	NA	5q23.2		rs1895233-G	0.455224	2E-9		0.0248818	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
1522	chr5	122924863	122924864	rs1895233	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in IDL	115,082 European ancestry individuals	NA	5q23.2		rs1895233-G	0.455224	2E-9		0.0240631	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
1522	chr5	122924863	122924864	rs1895233	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Clinical LDL cholesterol levels	115,082 European ancestry individuals	NA	5q23.2		rs1895233-G	0.455224	8E-10		0.0254065	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
1522	chr5	122924863	122924864	rs1895233	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large LDL	115,082 European ancestry individuals	NA	5q23.2		rs1895233-G	0.455224	3E-9		0.0245728	[0.016-0.033] unit decrease	NR [11722792] (imputed)	N
1522	chr5	122924863	122924864	rs1895233	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in LDL	115,082 European ancestry individuals	NA	5q23.2		rs1895233-G	0.455224	4E-9		0.0243712	[0.016-0.033] unit decrease	NR [11722792] (imputed)	N
1522	chr5	122924863	122924864	rs1895233	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in IDL	115,082 European ancestry individuals	NA	5q23.2		rs1895233-G	0.455224	1E-9		0.0243091	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
1522	chr5	122924863	122924864	rs1895233	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large LDL	115,082 European ancestry individuals	NA	5q23.2		rs1895233-G	0.455224	1E-9		0.024906	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
1522	chr5	122924863	122924864	rs1895233	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in IDL	115,082 European ancestry individuals	NA	5q23.2		rs1895233-G	0.455224	1E-9		0.0243866	[0.017-0.032] unit decrease	NR [11722792] (imputed)	N
1522	chr5	122928964	122928965	rs58466006	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	5q23.2	CSNK1G3	rs58466006-A	0.432	2E-8		0.015	[0.0097-0.0203] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1523	chr5	122948190	122948191	rs2897788	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 40)	19,670 European ancestry individuals	NA	5q23.2		rs2897788-?	NR	3E-9				NR [9705931] (imputed)	N
1523	chr5	122955212	122955229	rs373496042	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	5q23.2	intergenic	rs373496042-GTTTTTTTTCTTTTTTTT	0.8829	6E-10		0.3572	[0.24-0.47] mmHg increase	Affymetrix [NR] (imputed)	N
1523	chr5	122957220	122957221	rs35501151	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q23.2	NR	rs35501151-G	0.01045	2E-10	(PRSS1)	0.2015	NR unit increase	Illumina [1671387] (imputed)	N
1523	chr5	122958837	122958838	rs77507484	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	5q23.2		rs77507484-T	NR	1E-10		0.0206	[0.014-0.027] unit increase	Affymetrix, Illumina [20535842] (imputed)	N
1523	chr5	122963311	122963312	rs9885489	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	5q23.2	NR	rs9885489-A	0.744947	7E-12		0.052299	[0.037-0.068] unit decrease	Affymetrix [17914406] (imputed)	N
1523	chr5	122990901	122990902	rs13172141	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	5q23.2	CSNK1G3, ZNF608	rs13172141-A	0.5694	2E-9		1.0219371		Affymetrix [11880941] (imputed)	N
1523	chr5	123003064	123003065	rs2897790	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	5q23.2	NR	rs2897790-A	0.8007	8E-10		0.0435	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
1523	chr5	123017887	123017888	rs13156386	29395996	van Laarhoven A	2018-01-23	Lancet Infect Dis	Cerebral tryptophan metabolism and outcome of tuberculous meningitis: an observational cohort study.	CSF tryptophan concentration in tuberculous meningitis	130 individuals	NA	5q23.2	CSNK1G3	rs13156386-?		4E-6		1.6	unit increase	Illumina [4751257] (imputed)	N
1523	chr5	123045466	123045467	rs78235140	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	5q23.2	NR	rs78235140-C	NR	2E-9		0.025	[0.017-0.033] unit increase	Affymetrix [9000000] (imputed)	N
1524	chr5	123084452	123084453	rs78460259	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	5q23.2	NR	rs78460259-T	0.184574	3E-8		0.0481844	[0.031-0.065] unit increase	Affymetrix [17914406] (imputed)	N
1524	chr5	123107144	123107145	rs3905510	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	5q23.2	NR	rs3905510-A	0.8097	4E-8		0.0394	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
1524	chr5	123119043	123119044	rs147664194	33168928	Wenric S	2020-11-10	Pharmacogenomics J	Rapid response to the alpha-1 adrenergic agent phenylephrine in the perioperative period is impacted by genomics and ancestry.	Rapid response to perioperative phenylephrine (change in systolic blood pressure)	1,082 African American individuals, 1,112 European ancestry individuals, 1,505 Hispanic individuals	NA	5q23.2	NR	rs147664194-?		5E-8	(EA)	1.17	[0.74-1.6] unit decrease	Illumina [42246687] (imputed)	N
1524	chr5	123119564	123119565	rs11241713	19451621	Landers JE	2009-05-18	Proc Natl Acad Sci U S A	Reduced expression of the Kinesin-Associated Protein 3 (KIFAP3) gene increases survival in sporadic amyotrophic lateral sclerosis.	Amyotrophic lateral sclerosis	1,821 cases, 2,258 controls	538 cases, 556 controls	5q23.2	CSNK1G3	rs11241713-T	NR	3E-6	(survival)	0.79	[0.46-1.12] years increase	Illumina [288357]	N
1524	chr5	123136655	123136656	rs6891344	29971594	Rosenberger A	2018-07-03	Int Arch Occup Environ Health	Genetic modifiers of radon-induced lung cancer risk: a genome-wide interaction study in former uranium miners.	Lung cancer x radon exposure interaction (1df)	49 European ancestry high radon exposure cases, 15,028 European ancestry low radon exposure cases, 259 European ancestry high radon exposure controls, 13,263 European ancestry low radon exposure controls	NA	5q23.2	NR	rs6891344-?	NR	3E-6		3.91	[2.18-6.99]	Illumina [407117]	N
1524	chr5	123136655	123136656	rs6891344	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Systolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	5q23.2	CSNK1G3	rs6891344-A	0.819	1E-6		0.2811	[0.17-0.39] mm Hg increase	Affymetrix, Illumina, Perlegen [128272]	N
1524	chr5	123136655	123136656	rs6891344	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Diastolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	5q23.2	CSNK1G3	rs6891344-A	0.819	2E-11		0.2311	[0.16-0.3] mm Hg increase	Affymetrix, Illumina, Perlegen [128272]	N
1524	chr5	123136697	123136698	rs257141	33693626	Jamieson SE	2021-03-09	Clin Infect Dis	Common and rare genetic variants that could contribute to severe otitis media in an Australian Aboriginal population.	Otitis media	21 Martu ancestry cases, 370 Martu ancestry controls	NA	5q23.2		rs257141-T	0.21	7E-6				Illumina [6724284] (imputed)	N
1524	chr5	123137891	123137892	rs2431345	27611488	Almoguera B	2016-09-09	Am J Respir Crit Care Med	Identification of Four Novel Loci in Asthma in European American and African American Populations.	Adult asthma	337 African American allergic asthma cases, 321 African American non-allergic asthma cases, 1,367 African American controls, 466 European American allergic asthma cases, 626 European American non-allergic asthma cases, 7,878 European American controls	NA	5q23.2	CSNK1G3	rs2431345-?	NR	1E-6		0.225	[0.13-0.32] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1524	chr5	123157421	123157422	rs257016	22005930	Hollingworth P	2011-10-18	Mol Psychiatry	Genome-wide association study of Alzheimer's disease with psychotic symptoms.	Psychosis in Alzheimer's disease	1,039 European ancestry cases with psychosis, 610 European ancestry cases without psychosis, 260 European, African American and Native American ancestry cases with psychosis and 125 European, African American and Native American ancestry cases without psychosis from 264 families	NA	5q23.2	AC008541.1	rs257016-?	0.63	4E-6		1.4285715	[NR]	Illumina [1882172] (imputed)	N
1524	chr5	123161664	123161665	rs72799710	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1b levels	8,243 Finnish ancestry individuals	NA	5q23.2	NR	rs72799710-C	NR	3E-6		0.1014	[0.059-0.144] SD units increase	NR [10700000] (imputed)	N
1524	chr5	123177357	123177358	rs113098727	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	5q23.2	NR	rs113098727-?	NR	2E-6				Illumina [at least 7383741] (imputed)	N
1524	chr5	123179989	123179990	rs11747272	29971594	Rosenberger A	2018-07-03	Int Arch Occup Environ Health	Genetic modifiers of radon-induced lung cancer risk: a genome-wide interaction study in former uranium miners.	Lung cancer x radon exposure interaction (1df)	49 European ancestry high radon exposure cases, 15,028 European ancestry low radon exposure cases, 259 European ancestry high radon exposure controls, 13,263 European ancestry low radon exposure controls	NA	5q23.2	NR	rs11747272-?	NR	4E-6		3.35	[1.98-5.68]	Illumina [407117]	N
1524	chr5	123192433	123192434	rs1021769	24468470	Zhang C	2013-12-26	Neurobiol Aging	Genetic susceptibility to accelerated cognitive decline in the US Health and Retirement Study.	Cognitive decline (age-related)	5,765 European ancestry individuals, 890 African American individuals	NA	5q23.2	intergenic	rs1021769-?	NR	7E-6	(EA)	0.0151	[0.00853-0.02172] unit decrease	Illumina [1530316]	N
1525	chr5	123273387	123273388	rs115515568	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	5q23.2	NR	rs115515568-?	NR	5E-6		10519.622	NR unit decrease	Illumina [2379855]	N
1525	chr5	123334828	123334829	rs875480	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5q23.2	CSNK1G3	rs875480-?	NR	1E-8	(indoxyl sulfate)	0.24960916	[0.16-0.34] unit increase	Affymetrix [at least 2500000] (imputed)	N
1526	chr5	123398097	123398098	rs7448080	24962325	Kapoor M	2014-06-11	Drug Alcohol Depend	Genome-wide survival analysis of age at onset of alcohol dependence in extended high-risk COGA families.	Alcohol dependence (age at onset)	685 European ancestry cases, 1,103 European ancestry controls from 118 families	NA	5q23.2	NR	rs7448080-T	0.05	4E-6		1.69	[1.47-1.91]	Illumina [4058415] (imputed)	N
1526	chr5	123415403	123415404	rs77025842	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	7,894 Sub-Saharan African ancestry individuals	NA	5q23.2		rs77025842-G	0.987145	9E-6		0.0390848	[0.022-0.056] unit decrease	Illumina [13900000] (imputed)	N
1526	chr5	123459982	123459983	rs930889	33907183	Guo S	2021-04-27	Transl Psychiatry	Genome wide association study identifies four loci for early onset schizophrenia.	Early-onset schizophrenia	1,256 Han Chinese ancestry cases, 2,661 Han Chinese ancestry controls	903 Han Chinese ancestry cases, 3,900 Han Chinese ancestry controls	5q23.2	NR	rs930889-T	NR	9E-6		0.8384	[NR]	Illumina [4867007] (imputed)	N
1527	chr5	123571159	123571160	rs17501712	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Subcutaneous adipose tissue	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	5q23.2	ZNF608	rs17501712-T	0.14	7E-7	(women)			Affymetrix, Illumina [2500000] (imputed)	N
1527	chr5	123592858	123592859	rs1083845	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	5q23.2	Intergenic	rs1083845-A	0.6384	4E-10	(MTAG)	0.0117	[0.008-0.0154] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1527	chr5	123592858	123592859	rs1083845	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	5q23.2	Intergenic	rs1083845-A	0.6384	6E-9		0.0118	[0.0079-0.0157] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1527	chr5	123592858	123592859	rs1083845	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	5q23.2	Intergenic	rs1083845-A	0.6388	3E-10	(MTAG)	0.0108	[0.0075-0.0141] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1528	chr5	123720439	123720440	rs6888065	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	5q23.2		rs6888065-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1529	chr5	123736405	123736406	rs6878727	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	5q23.2	NR	rs6878727-G	0.3599	6E-6	(EA)	0.0335	[0.019-0.048] unit decrease	Illumina [~ 11800000] (imputed)	N
1529	chr5	123832651	123832652	rs12513663	23377640	GENDEP Investigators	2013-02-01	Am J Psychiatry	Common genetic variation and antidepressant efficacy in major depressive disorder: a meta-analysis of three genome-wide pharmacogenetic studies.	Major depressive disorder	Up to 2,256 European ancestry cases	NA	5q23.2	intergenic	rs12513663-T	0.268	2E-6	(% improvement - 2 weeks)	1.184	[1.11-1.26]	Affymetrix, Illumina [1200000] (imputed)	N
1529	chr5	123848131	123848132	rs6874665	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	5q23.2	Intergenic	rs6874665-A	0.4425	8E-24	(MTAG)	0.0181	[0.015-0.022] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1529	chr5	123848131	123848132	rs6874665	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	5q23.2	Intergenic	rs6874665-G	0.5575	4E-22		0.019	[0.015-0.023] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1529	chr5	123848131	123848132	rs6874665	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	5q23.2	Intergenic	rs6874665-G	0.5567	1E-8		0.013	[0.0085-0.0175] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1529	chr5	123857209	123857210	rs4836094	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	5q23.2	ZNF608	rs4836094-T	0.4157	3E-11		0.01309079	[0.0092-0.0169] unit decrease	Illumina [9339358] (imputed)	N
1529	chr5	123860047	123860048	rs10061387	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	5q23.2	Intergenic	rs10061387-A	0.5644	1E-17	(MTAG)	0.0142	[0.011-0.018] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1529	chr5	123860047	123860048	rs10061387	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	5q23.2	Intergenic	rs10061387-A	0.5543	2E-12	(MTAG)	0.0162	[0.012-0.021] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1530	chr5	123883856	123883857	rs7704551	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q23.2	NR	rs7704551-T	0.262593	3E-10				Affymetrix, Illumina [23467995] (imputed)	N
1530	chr5	123883856	123883857	rs7704551	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	5q23.2	NR	rs7704551-T	0.282524	5E-12		0.014356	[0.01-0.018] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
1530	chr5	123950879	123950880	rs10066524	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	5q23.2	ZNF608	rs10066524-?		4E-8				Affymetrix, Illumina [NR] (imputed)	N
1530	chr5	123967101	123967102	rs10079392	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	5q23.2		rs10079392-T	NR	6E-16		0.0106	[0.0081-0.0131] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1530	chr5	123990269	123990270	rs9327336	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	5q23.2	ZNF608	rs9327336-T	0.6565	2E-10		0.0127	[0.0088-0.0166] unit decrease	Affymetrix [18391927] (imputed)	N
1530	chr5	123990269	123990270	rs9327336	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5q23.2		rs9327336-?	NR	3E-23				NR [~ 8900000] (imputed)	N
1531	chr5	124024280	124024281	rs4285214	28470677	Tang H	2017-05-03	Int J Cancer	Genetic polymorphisms associated with pancreatic cancer survival: a genome-wide association study.	Survival in pancreatic cancer	868 European ancestry cases	820 European ancestry cases	5q23.2	ZNF608	rs4285214-G	NR	8E-7		1.65	[1.35-2.02]	NR [7738399] (imputed)	N
1531	chr5	124041058	124041059	rs6860814	33693626	Jamieson SE	2021-03-09	Clin Infect Dis	Common and rare genetic variants that could contribute to severe otitis media in an Australian Aboriginal population.	Otitis media	21 Martu ancestry cases, 370 Martu ancestry controls	NA	5q23.2		rs6860814-G	0.33	8E-6				Illumina [6724284] (imputed)	N
1531	chr5	124057583	124057584	rs6893139	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	5q23.2	ZNF608	rs6893139-G	0.59546	2E-8		0.0108901	[0.0071-0.0147] unit increase	Affymetrix [NR] (imputed)	N
1531	chr5	124075469	124075470	rs4476718	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Monobrow	69,284 European ancestry individuals	NA	5q23.2	ZNF608	rs4476718-?	NR	2E-14		0.037	[0.047-0.028] unit decrease	Illumina [12039491] (imputed)	N
1531	chr5	124076082	124076083	rs10056527	30583557	Loohuis LM	2018-12-22	Genes (Basel)	The Alkaline Phosphatase (ALPL) Locus Is Associated with B6 Vitamer Levels in CSF and Plasma.	B6 vitamer levels (multivariate analysis)	493 European ancestry individuals	NA	5q23.2	ZNF608	rs10056527-?		8E-7				Illumina [6260487] (imputed)	N
1531	chr5	124101038	124101039	rs7712983	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	5q23.2	NR	rs7712983-?	NR	1E-8				Affymetrix [NR]	N
1531	chr5	124110272	124110273	rs6875262	32201043	Smeland OB	2020-02-08	Biol Psychiatry	Genome-wide Association Analysis of Parkinson's Disease and Schizophrenia Reveals Shared Genetic Architecture and Identifies Novel Risk Loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	NA	5q23.2	ZNF608	rs6875262-T		3E-9		0.1639	[0.11-0.22] unit increase	Illumina [NR]	N
1531	chr5	124110272	124110273	rs6875262	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	5q23.2	ZNF608	rs6875262-T	0.0986	1E-8		0.1141	[0.075-0.153] unit increase	NR [7784415] (imputed)	N
1532	chr5	124139760	124139761	rs6595549	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	5q23.2	NR	rs6595549-G	0.821392	6E-9		0.0162064	[0.011-0.022] unit increase	NR [NR]	N
1532	chr5	124139894	124139895	rs6595551	24465431	Ma RC	2014-01-20	PLoS One	Familial young-onset diabetes, pre-diabetes and cardiovascular disease are associated with genetic variants of DACH1 in Chinese.	Type 2 diabetes (young onset) and obesity	99 Chinese ancestry cases, 101 Chinese ancestry controls	NA	5q23.2	ZNF608	rs6595551-G	0.530	6E-6		2.63	[1.72-4.01]	Illumina [425513]	N
1532	chr5	124205384	124205385	rs12658172	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Testosterone levels	310,461 European ancestry individuals, 5,453 African ancestry individuals, 6,680 South Asian ancestry individuals	NA	5q23.2	NR	rs12658172-C	NR	1E-11		0.0237	[0.017-0.031] unit decrease	Affymetrix [9000000] (imputed)	N
1532	chr5	124205384	124205385	rs12658172	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	5q23.2	NR	rs12658172-G	0.841765	3E-23		0.0177375	[0.014-0.021] unit increase	Affymetrix [16578495] (imputed)	N
1532	chr5	124205384	124205385	rs12658172	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	5q23.2	NR	rs12658172-G	0.841514	6E-41		0.0516979	[0.044-0.059] unit increase	Affymetrix [16580851] (imputed)	N
1532	chr5	124205384	124205385	rs12658172	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	5q23.2	NR	rs12658172-G	0.841914	3E-12		0.018886	[0.013-0.024] unit increase	Affymetrix [16583148] (imputed)	N
1532	chr5	124205384	124205385	rs12658172	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	5q23.2	NR	rs12658172-G	0.84181	2E-18		0.0303213	[0.023-0.037] unit increase	Affymetrix [16585745] (imputed)	N
1532	chr5	124208919	124208920	rs11741307	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	5q23.2		rs11741307-G	NR	5E-15		0.0203	[0.015-0.025] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1532	chr5	124208919	124208920	rs11741307	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	5q23.2		rs11741307-G	0.404556	8E-11		0.0187971	[0.013-0.024] unit decrease	Illumina [13479924] (imputed)	N
1532	chr5	124220389	124220389	rs561029885	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	5q23.2	ZNF608	rs561029885-A	0.822117	2E-10		0.0179041	[0.012-0.023] unit decrease	NR [16516521] (imputed)	N
1532	chr5	124235426	124235427	rs10058365	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	5q23.2		rs10058365-?	NR	3E-15				NR [~ 8900000] (imputed)	N
1532	chr5	124238127	124238128	rs6880658	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	5q23.2		rs6880658-T	0.09	1E-14		7.69	z score increase	Affymetrix [9061022] (imputed)	N
1532	chr5	124239154	124239155	rs73302753	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 3)	19,670 European ancestry individuals	NA	5q23.2		rs73302753-?	NR	1E-8				NR [9705931] (imputed)	N
1532	chr5	124253736	124253737	rs10078386	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	163,835 East Asian ancestry individuals	NA	5q23.2		rs10078386-G	0.505706	4E-8		0.0174254	[0.011-0.024] unit decrease	Illumina [13479178] (imputed)	N
1533	chr5	124261231	124261232	rs116617502	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	5q23.2		rs116617502-A	0.07	4E-16		8.15	z score increase	Affymetrix [9061022] (imputed)	N
1533	chr5	124261231	124261232	rs116617502	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	5q23.2	NR	rs116617502-A	0.0721	1E-16				NR [9056863] (imputed)	N
1533	chr5	124261231	124261232	rs116617502	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (min-P)	26,502 European ancestry individuals	NA	5q23.2	KCNN3, DCST2, DCST1, ADAM15, EFNA4, EFNA3, EFNA1, SLC50A1, DPM3, KRTCAP2, RP11-201K10.3, TRIM46, MUC1, THBS3, MTX1, GBA, FAM189B, SCAMP3, CLK2, HCN3, PKLR, FDPS, RUSC1, ASH1L, MSTO1, YY1AP1, DAP3, GON4L, SYT11, RIT1, KIAA0907, RXFP4, ARHGEF2, LMNA	rs116617502-?		3E-10				NR [7428630] (imputed)	N
1533	chr5	124261231	124261232	rs116617502	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	5q23.2	NR	rs116617502-?		4E-10				NR [7428630] (imputed)	N
1533	chr5	124261231	124261232	rs116617502	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (min-P)	26,502 European ancestry individuals	NA	5q23.2	RDH14, NT5C1B-RDH14, NT5C1B	rs116617502-?		9E-10				NR [7428630] (imputed)	N
1533	chr5	124273519	124273520	rs10041724	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	5q23.2	NR	rs10041724-?		4E-11		0.0180931	[0.013-0.023] unit increase	Affymetrix [19400418] (imputed)	N
1533	chr5	124283820	124283820	rs149998495	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	5q23.2	NR	rs149998495-?	0.0972	2E-8	(Pericalcarine)	11.483114	[7.47-15.5] unit increase	Affymetrix, Illumina [NR]	N
1533	chr5	124291401	124291402	rs4240384	29904099	Kottyan LC	2018-06-08	Genes Immun	Genetic variants at the 16p13 locus confer risk for eosinophilic esophagitis.	Eosinophilic esophagitis	1,210 European ancestry cases, 3,734 European ancestry controls	NA	5q23.2	intergenic	rs4240384-?	0.818	2E-7		1.4326648		Illumina [79405]	N
1533	chr5	124304676	124304677	rs10060023	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	5q23.2		rs10060023-T	0.3276	2E-13		0.011	[0.0081-0.0139] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1533	chr5	124310691	124310692	rs6872411	27611488	Almoguera B	2016-09-09	Am J Respir Crit Care Med	Identification of Four Novel Loci in Asthma in European American and African American Populations.	Asthma (childhood onset)	1,181 African American allergic asthma child cases, 498 African American non-allergic asthma child cases, 2,993 African American child controls, 998 European American allergic asthma child cases, 182 European American non-allergic asthma child cases, 4,097 European American child controls.	NA	5q23.2	ZNF608	rs6872411-?	NR	7E-6		0.159	[0.088-0.23] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1533	chr5	124316030	124316031	rs4357030	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	5q23.2	ZNF608, LOC101927421	rs4357030-T	0.529	4E-10	(Japanese)	0.024	[0.016-0.032] unit increase	Illumina [6108953] (imputed)	N
1533	chr5	124330521	124330522	rs6864049	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	5q23.2		rs6864049-G	NR	7E-10		0.012	[0.0083-0.0157] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1533	chr5	124330521	124330522	rs6864049	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	5q23.2	NR	rs6864049-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1533	chr5	124330521	124330522	rs6864049	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	5q23.2		rs6864049-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1533	chr5	124330521	124330522	rs6864049	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	5q23.2	NA	rs6864049-A	0.489	1E-13		0.0121	[0.009-0.0152] unit decrease	NR [~ 27400000] (imputed)	N
1533	chr5	124330521	124330522	rs6864049	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	5q23.2	NR	rs6864049-A	NR	4E-8		0.014	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
1533	chr5	124330521	124330522	rs6864049	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	5q23.2	ZNF608, LOC101927421	rs6864049-G	0.53	2E-10		0.015	[0.011-0.019] unit decrease	Illumina [6108953] (imputed)	N
1533	chr5	124330521	124330522	rs6864049	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	5q23.2	LOC644659, ZNF608	rs6864049-G	0.5445	2E-8		0.0225	[0.015-0.03] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1533	chr5	124330521	124330522	rs6864049	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	5q23.2	LOC644659, ZNF608	rs6864049-G	0.5386	6E-8	(men)	0.0324	[0.021-0.044] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1533	chr5	124330521	124330522	rs6864049	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	5q23.2	LOC644659, ZNF608	rs6864049-G	0.5327999999999999	2E-6	(EA, men)	0.041	[0.024-0.058] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1533	chr5	124330521	124330522	rs6864049	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	5q23.2	LOC644659, ZNF608	rs6864049-G	0.5315	3E-8	(EA)	0.0231	[0.015-0.031] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1533	chr5	124330521	124330522	rs6864049	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	5q23.2	LOC644659, ZNF608	rs6864049-?	NR	5E-8	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1533	chr5	124330521	124330522	rs6864049	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	5q23.2	LOC644659, ZNF608	rs6864049-?	NR	5E-6	(EA, men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1533	chr5	124330521	124330522	rs6864049	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	5q23.2	LOC644659, ZNF608	rs6864049-?	NR	3E-8				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1533	chr5	124330521	124330522	rs6864049	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	5q23.2	LOC644659, ZNF608	rs6864049-?	NR	2E-7	(men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1533	chr5	124330521	124330522	rs6864049	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	5q23.2	LOC644659, ZNF608	rs6864049-G	0.5445	7E-8	(men)	0.0282	[0.018-0.038] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1533	chr5	124330521	124330522	rs6864049	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	5q23.2	LOC644659, ZNF608	rs6864049-G	0.5445	3E-8		0.0199	[0.013-0.027] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1533	chr5	124330521	124330522	rs6864049	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	5q23.2	LOC644659, ZNF608	rs6864049-G	0.5315	7E-8	(EA, men)	0.0298	[0.019-0.041] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1533	chr5	124330521	124330522	rs6864049	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	5q23.2	LOC644659, ZNF608	rs6864049-G	0.5315	3E-8	(EA)	0.021	[0.014-0.028] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1533	chr5	124330521	124330522	rs6864049	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	5q23.2	Intergenic	rs6864049-A	0.467126810869867	3E-11		0.018254736	unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1533	chr5	124330521	124330522	rs6864049	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	5q23.2	ZNF608	rs6864049-G	0.541	2E-7		0.015	[0.0095-0.0213] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1533	chr5	124330521	124330522	rs6864049	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	5q23.2	ZNF608	rs6864049-G	0.533	4E-7	(EA)	0.016	[0.0097-0.0219] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1533	chr5	124332102	124332103	rs4836133	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		5q23.2	ZNF608	rs4836133-C	0.509694	3E-9		0.00836449	[0.0056-0.0111] unit decrease	Affymetrix [12370749]	N
1533	chr5	124332102	124332103	rs4836133	20935630	Speliotes EK	2010-10-10	Nat Genet	Association analyses of 249,796 individuals reveal 18 new loci associated with body mass index.	Body mass index	Up to 123,865 European ancestry individuals	Up to 125,931 European ancestry individuals	5q23.2	ZNF608	rs4836133-A	0.48	2E-9		0.07	[0.03-0.11] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2800000] (imputed)	N
1533	chr5	124335246	124335247	rs10057590	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	5q23.2	Intergenic	rs10057590-A	0.4775	1E-12	(MTAG)	0.0117	[0.0084-0.015] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1533	chr5	124335246	124335247	rs10057590	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	5q23.2		rs10057590-A	0.4724	4E-14		0.0106	[0.0079-0.0133] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1533	chr5	124335246	124335247	rs10057590	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	5q23.2	Intergenic	rs10057590-A	0.4724	1E-16	(MTAG)	0.0109	[0.0084-0.0134] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1533	chr5	124335246	124335247	rs10057590	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	5q23.2	Intergenic	rs10057590-A	0.4739	8E-10	(MTAG)	0.0141	[0.0096-0.0186] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1533	chr5	124340702	124340703	rs6891054	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q23.2	NR	rs6891054-G	0.314126	4E-19				Affymetrix, Illumina [23472807] (imputed)	N
1533	chr5	124343850	124343851	rs12654442	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	5q23.2	LOC101927421, ZNF608	rs12654442-T	0.27	3E-10		0.46	[0.32-0.6] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1533	chr5	124347087	124347088	rs3936060	23669352	Graff M	2013-05-12	Hum Mol Genet	Genome-wide analysis of BMI in adolescents and young adults reveals additional insight into the effects of genetic loci over the life course.	Body mass index	Up to 13,627 European ancestry individuals	Up to 16,253 European ancestry individuals	5q23.2	ZNF608	rs3936060-C	0.81	5E-6		0.049	[0.027-0.071] unit decrease	Affymetrix, Illumina [557887] (imputed)	N
1533	chr5	124348068	124348069	rs12516382	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	5q23.2		rs12516382-A	NR	3E-12		0.0178	[0.013-0.023] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
1533	chr5	124348068	124348069	rs12516382	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	High density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	5q23.2	ZNF608, LOC101927421	rs12516382-?		5E-9		0.0269	[0.018-0.036] unit increase	Illumina [31500000] (imputed)	N
1533	chr5	124350033	124350034	rs4304077	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	5q23.2		rs4304077-A	0.241429	6E-13		0.018621907	[0.014-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1533	chr5	124351184	124351185	rs6882861	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	5q23.2	NR	rs6882861-A	0.241755	5E-17		0.018512	[0.014-0.023] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1533	chr5	124351538	124351539	rs6883400	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	5q23.2	LOC101927421, ZNF608	rs6883400-A	0.2442	5E-10		0.4818	[0.33-0.63] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1533	chr5	124352551	124352553	rs59317344	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	IgM levels	14,442 Icelandic ancestry individuals	2,157 Swedish ancestry individuals	5q23.2	ZNF608	rs59317344-A	0.2836	4E-9		0.07	NR SD units decrease	Illumina [21568490] (imputed)	N
1533	chr5	124357316	124357317	rs375226983	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	5q23.2		rs375226983-G	0.18	2E-10		6.39	z score increase	Affymetrix [9061022] (imputed)	N
1533	chr5	124365966	124365967	rs6862844	20932654	Kerns SL	2010-10-05	Int J Radiat Oncol Biol Phys	Genome-wide association study to identify single nucleotide polymorphisms (SNPs) associated with the development of erectile dysfunction in African-American men after radiotherapy for prostate cancer.	Erectile dysfunction and prostate cancer treatment	27 African American cases, 52 African American controls	NA	5q23.2	ZNF608	rs6862844-?	0.09	4E-6		6.72	[NR]	Affymetrix [512497]	N
1534	chr5	124402548	124402549	rs71576804	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5q23.2		rs71576804-?	NR	5E-10				NR [~ 8900000] (imputed)	N
1534	chr5	124415371	124415372	rs147658908	34779240	Cheng B	2021-11-01	Bone Joint Res	Gut microbiota is associated with bone mineral density : an observational and genome-wide environmental interaction analysis in the UK Biobank cohort.	Femur total bone mineral density x gut microbiota (genus Lactococcus) interaction	2,293 European ancestry individuals	NA	5q23.2		rs147658908-G	NR	3E-9		0.535	[0.36-0.71] unit decrease	Affymetrix [509886] (imputed)	N
1535	chr5	124526312	124526313	rs55644503	28440896	Yin X	2017-04-25	Am J Med Genet B Neuropsychiatr Genet	Genome-wide meta-analysis identifies a novel susceptibility signal at CACNA2D3 for nicotine dependence.	Nicotine dependence	7,297 European ancestry cases, 5,577 European ancestry controls, 918 European ancestry whole genome sequenced cases, 921 European ancestry whole genome sequenced controls, African American cases, 1,500 African American controls	NA	5q23.2	ZNF608	rs55644503-T		2E-6	(AA)	0.13	[0.071-0.189] unit decrease	Illumina [at least 3251541] (imputed)	N
1535	chr5	124529483	124529484	rs6895024	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	5q23.2	Intergenic	rs6895024-?	NR	5E-6		1.348	[NR]	Affymetrix [492217] (imputed)	N
1535	chr5	124549764	124549765	rs77840478	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Hepatitis B	1,425 European ancestry cases, 218,180 European ancestry controls	NA	5q23.2	NR	rs77840478-?	NR	3E-6		1.1726	[0.74-1.6] unit decrease	Illumina [at least 560000] (imputed)	N
1535	chr5	124550079	124550080	rs7713414	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	5q23.2	NR	rs7713414-?	NR	3E-10				Affymetrix [NR]	N
1535	chr5	124555769	124555770	rs184897315	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	5q23.2	Intergenic	rs184897315-G	1.0	4E-7	(AA)	0.855	unit increase	Illumina [NR] (imputed)	N
1535	chr5	124555846	124555847	rs1898910	25524916	Palmer ND	2014-12-18	Diabetes	Genetic Variants Associated With Quantitative Glucose Homeostasis Traits Translate to Type 2 Diabetes in Mexican Americans: The GUARDIAN (Genetics Underlying Diabetes in Hispanics) Consortium.	Glucose homeostasis traits	up to 4,176 Mexican American individuals	NA	5q23.2	intergenic	rs1898910-?		7E-6	(SI)	0.38	[0.2-0.56] unit decrease	Illumina [693128]	N
1535	chr5	124588157	124588158	rs17152484	25085501	Bunyavanich S	2014-08-02	BMC Med Genomics	Integrated genome-wide association, coexpression network, and expression single nucleotide polymorphism analysis identifies novel pathway in allergic rhinitis.	Allergic rhinitis in non-asthmatics	249 European ancestry cases, 164 Latino cases, 248 African American/Afro-Caribbean cases, 674 European ancestry controls, 588 Latino controls, 464 African American/Afro-Caribbean controls	NA	5q23.2	NR	rs17152484-?	0.16	4E-7	(EA)	2.17	[1.32-6.67]	Affymetrix, Illumina [NR] (imputed)	N
1535	chr5	124588389	124588390	rs12520745	25085501	Bunyavanich S	2014-08-02	BMC Med Genomics	Integrated genome-wide association, coexpression network, and expression single nucleotide polymorphism analysis identifies novel pathway in allergic rhinitis.	Allergic rhinitis in non-asthmatics	249 European ancestry cases, 164 Latino cases, 248 African American/Afro-Caribbean cases, 674 European ancestry controls, 588 Latino controls, 464 African American/Afro-Caribbean controls	NA	5q23.2	NR	rs12520745-?	0.17	6E-7	(EA)	2.13	[1.3-5.56]	Affymetrix, Illumina [NR] (imputed)	N
1535	chr5	124600309	124600310	rs12186945	25378659	Lemaitre RN	2014-11-06	J Lipid Res	Genetic loci associated with circulating levels of very long-chain saturated fatty acids.	Very long-chain saturated fatty acid levels (fatty acid 20:0)	10,129 European ancestry individuals	NA	5q23.2	ZNF608	rs12186945-A	NR	2E-6		4.743	[NR] Z score increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1536	chr5	124688712	124688713	rs72782907	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Lingual gyrus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	5q23.2	NR	rs72782907-?		5E-6				Illumina [4322238] (imputed)	N
1536	chr5	124699238	124699239	rs6889896	25897834	Biernacka JM	2015-04-21	Transl Psychiatry	The International SSRI Pharmacogenomics Consortium (ISPC): a genome-wide association study of antidepressant treatment response.	Response to serotonin reuptake inhibitors in major depressive disorder	298 European ancestry cases, 567 Asian ancestry cases, 1529 European and other ancestry cases	NA	5q23.2	LOC644659	rs6889896-?	NR	5E-7	(% Change in score)	0.17	[NR] unit decrease	Illumina [~ 7000000] (imputed)	N
1536	chr5	124700700	124700701	rs62374694	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	5q23.2		rs62374694-G	0.08	4E-11		6.61	z score increase	Affymetrix [9061022] (imputed)	N
1536	chr5	124737412	124737413	rs4836189	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	5q23.2	NR	rs4836189-G	0.406411997407981	2E-9		0.0056186556	[0.0038-0.0075] unit increase	NR [NR]	N
1536	chr5	124737412	124737413	rs4836189	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	5q23.2	NR	rs4836189-G	0.406411997407981	4E-9		0.008825284	[0.0059-0.0118] unit increase	NR [NR]	N
1536	chr5	124737412	124737413	rs4836189	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	5q23.2	NR	rs4836189-G	0.406411997407981	4E-9		0.0056450977	[0.0038-0.0075] unit increase	NR [NR]	N
1536	chr5	124743266	124743267	rs2637496	20041166	Fellay J	2009-12-24	PLoS Genet	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	5q23.2	intergenic	rs2637496-?	NR	9E-6	(progression)			Illumina [NR]	N
1536	chr5	124746812	124746813	rs62374731	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	5q23.2		rs62374731-T	0.08	8E-12		6.84	z score increase	Affymetrix [9061022] (imputed)	N
1536	chr5	124746812	124746813	rs62374731	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	5q23.2	NR	rs62374731-T	0.091	1E-10				NR [9056863] (imputed)	N
1537	chr5	124848905	124848906	rs17468244	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	5q23.2	LOC644659	rs17468244-G	0.114	8E-6	(Sedentary activity )	0.03	[NR] min/d increase	Illumina [899892]	N
1537	chr5	124864371	124864372	rs2130846	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5q23.2	GRAMD3	rs2130846-?	NR	5E-6	(cystathionine)	0.1896969	[0.11-0.27] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1538	chr5	124964531	124964532	rs10214334	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5q23.2	ZNF608	rs10214334-?	NR	5E-6	(cystathionine)	0.23944381	[0.14-0.34] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1538	chr5	124975264	124975265	rs114042773	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	5q23.2	NR	rs114042773-C	NR	9E-7		1.1904762	[NR]	Illumina [7158791] (imputed)	N
1538	chr5	125006961	125006962	rs17549394	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q23.2	NR	rs17549394-T	0.08362	4E-10	(HEXB)	0.04521	NR unit increase	Illumina [1671387] (imputed)	N
1538	chr5	125018356	125018357	rs963445	26528553	Davenport ER	2015-11-03	PLoS One	Genome-Wide Association Studies of the Human Gut Microbiota.	Gut microbiome composition (winter)	93 Hutterite individuals	NA	5q23.2	NR	rs963445-?	NR	8E-6	(family_Succinivibrionaceae)	0.9613802	[0.56-1.37] unit decrease	Affymetrix [211319]	N
1538	chr5	125023189	125023190	rs11960504	30713548	Schurz H	2019-01-18	Front Genet	A Sex-Stratified Genome-Wide Association Study of Tuberculosis Using a Multi-Ethnic Genotyping Array.	Tuberculosis	242 South African admixed female cases, 168 South African admixed male cases, 223 South African admixed female controls, 182 South African admixed male controls	NA	5q23.2	GRAMD2B	rs11960504-T	NR	7E-6	(Male)	2.801	[1.79-4.39]	Illumina [848325]	N
1540	chr5	125265056	125265057	rs72795008	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	5q23.2	NR	rs72795008-?	NR	6E-9				Illumina [7760689] (imputed)	N
1540	chr5	125304546	125304547	rs1910003	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Antibody status in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	5q23.2	NR	rs1910003-?	NR	2E-6				Affymetrix [5486770] (imputed)	N
1541	chr5	125319455	125319456	rs1073203	21441570	Grassi MA	2011-03-26	Hum Mol Genet	Genome-wide meta-analysis for severe diabetic retinopathy.	Diabetic retinopathy	973 European ancestry cases, 1,856 European ancestry controls	NA	5q23.2	LOC100130551, GRAMD3	rs1073203-G	0.13	9E-6		1.54	[NR]	Affymetrix, Illumina [2543887] (imputed)	N
1541	chr5	125322793	125322794	rs459529	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	5q23.2		rs459529-G	0.25572	7E-7		0.037972	[0.023-0.053] unit decrease	Affymetrix [15580782] (imputed)	N
1541	chr5	125324813	125324820	rs531222983	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Diastolic blood pressure (baseline)	13,137 European ancestry individuals	2,451 European ancestry individuals	5q23.2	NR	rs531222983-A	0.6747	5E-7		0.6629	[0.4-0.92] mmHg increase	Affymetrix, Illumina [NR] (imputed)	N
1541	chr5	125338474	125338475	rs13169113	20125193	Cirulli ET	2010-02-03	Eur J Hum Genet	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American individuals, up to 74 South Asian ancestry individuals	NA	5q23.2	GRAMD3	rs13169113-?	NR	9E-6	(Delayed Story Recall)			Illumina [up to 563855]	N
1541	chr5	125339263	125339264	rs77914729	34062886	Nazarian A	2021-05-01	Genes (Basel)	Genome-Wide Analysis of Sex Disparities in the Genetic Architecture of Lung and Colorectal Cancers.	Lung cancer	237 European ancestry female cases, 220 European ancestry male cases, 8,354 European ancestry female controls, 6,278 European ancestry male controls	NA	5q23.2	LINC02039	rs77914729-C	0.929	3E-6	(Male)	0.475	[0.35-0.6]	NR [up to 1668434] (imputed)	N
1541	chr5	125342127	125342128	rs11954381	34062886	Nazarian A	2021-05-01	Genes (Basel)	Genome-Wide Analysis of Sex Disparities in the Genetic Architecture of Lung and Colorectal Cancers.	Lung cancer	237 European ancestry female cases, 220 European ancestry male cases, 8,354 European ancestry female controls, 6,278 European ancestry male controls	NA	5q23.2	LINC02039	rs11954381-G	0.929	3E-6	(Male)	0.477	[0.35-0.6]	NR [up to 1668434] (imputed)	N
1541	chr5	125377672	125377673	rs12518356	30648747	Dudenkov TM	2019-01-16	Clin Pharmacol Ther	Anastrozole Aromatase Inhibitor Plasma Drug Concentration Genome-Wide Association Study: Functional Epistatic Interaction between SLC38A7 and ALPPL2.	Plasma anastrozole concentration in anastrozole-treated estrogen receptor positive breast cancer	634 European ancestry individuals, 40 African ancestry individuals, 13 Asian ancestry individuals	NA	5q23.2	NR	rs12518356-G	0.3123	4E-6		0.2618	[0.15-0.37] unit increase	Illumina [~ 600000] (imputed)	N
1541	chr5	125381667	125381668	rs7724529	30648747	Dudenkov TM	2019-01-16	Clin Pharmacol Ther	Anastrozole Aromatase Inhibitor Plasma Drug Concentration Genome-Wide Association Study: Functional Epistatic Interaction between SLC38A7 and ALPPL2.	Plasma anastrozole concentration in anastrozole-treated estrogen receptor positive breast cancer	634 European ancestry individuals, 40 African ancestry individuals, 13 Asian ancestry individuals	NA	5q23.2	NR	rs7724529-T	0.3159	5E-6		0.2597	[0.15-0.37] unit increase	Illumina [~ 600000] (imputed)	N
1541	chr5	125382323	125382324	rs10519881	30648747	Dudenkov TM	2019-01-16	Clin Pharmacol Ther	Anastrozole Aromatase Inhibitor Plasma Drug Concentration Genome-Wide Association Study: Functional Epistatic Interaction between SLC38A7 and ALPPL2.	Plasma anastrozole concentration in anastrozole-treated estrogen receptor positive breast cancer	634 European ancestry individuals, 40 African ancestry individuals, 13 Asian ancestry individuals	NA	5q23.2	NR	rs10519881-G	0.3156	4E-6		0.2607	[0.15-0.37] unit increase	Illumina [~ 600000] (imputed)	N
1542	chr5	125528398	125528399	rs958319	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q23.2	NR	rs958319-A	0.02091	3E-9	(CYP2C8)	0.3437	NR unit increase	Illumina [1671387] (imputed)	N
1542	chr5	125533129	125533130	rs17584191	34337005	Duan H	2021-07-17	Biomed Res Int	A Genome-Wide Association Study of Age-Related Hearing Impairment in Middle- and Old-Aged Chinese Twins.	Hearing function (2 kHz)	131 Chinese ancestry dizygotic twin pairs	NA	5q23.2		rs17584191-?	NR	2E-6				Illumina [1365315]	N
1543	chr5	125607911	125607912	rs78049001	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	5q23.2	NR	rs78049001-A	NR	3E-8	(GEE model)	0.8685	[0.56-1.17] unit decrease	NR [NR] (imputed)	N
1543	chr5	125625159	125625160	rs111665239	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q23.2	NR	rs111665239-C	0.02265	1E-8	(CYP2C8)	0.323	NR unit increase	Illumina [1671387] (imputed)	N
1543	chr5	125681854	125681855	rs75466870	29923122	Kakuta Y	2018-06-19	J Gastroenterol	NUDT15 codon 139 is the best pharmacogenetic marker for predicting thiopurine-induced severe adverse events in Japanese patients with inflammatory bowel disease: a multicenter study.	Thiopurine-induced alopecia in inflammatory bowel disease	81 Japanese ancestry cases, 1,139 Japanese ancestry controls	NA	5q23.2	GRAMD3	rs75466870-?	NR	5E-7		4.5	[2.5-8.0]	Affymetrix [> 5000000] (imputed)	N
1543	chr5	125683909	125683910	rs10060123	27918534	Chu AY	2016-12-05	Nat Genet	Multiethnic genome-wide meta-analysis of ectopic fat depots identifies loci associated with adipocyte development and differentiation.	Visceral adipose tissue adjusted for BMI	7,431 European ancestry women,  2,163 African American women	NA	5q23.2	GRAMD3	rs10060123-A	0.26	1E-6	(EA)	4.8	z-score increase	Affymetrix, Illumina [~ 2600000] (imputed)	N
1543	chr5	125683909	125683910	rs10060123	27918534	Chu AY	2016-12-05	Nat Genet	Multiethnic genome-wide meta-analysis of ectopic fat depots identifies loci associated with adipocyte development and differentiation.	Visceral adipose tissue adjusted for BMI	7,431 European ancestry women,  2,163 African American women	NA	5q23.2	GRAMD3	rs10060123-A	0.23	5E-8		5.47	z-score increase	Affymetrix, Illumina [~ 2600000] (imputed)	N
1543	chr5	125683909	125683910	rs10060123	27918534	Chu AY	2016-12-05	Nat Genet	Multiethnic genome-wide meta-analysis of ectopic fat depots identifies loci associated with adipocyte development and differentiation.	Visceral adipose tissue	7,431 European ancestry women, 2,163 African American women	NA	5q23.2	GRAMD3	rs10060123-?	NR	1E-6				Affymetrix, Illumina [~ 2600000] (imputed)	N
1543	chr5	125694419	125694420	rs73330467	32723796	Mehta SD	2020-07-28	mSystems	Host Genetic Factors Associated with Vaginal Microbiome Composition in Kenyan Women.	Vaginal microbiome composition (L. crispatus)	42 Kenyan ancestry cases, 129 Kenyan ancestry controls	NA	5q23.2	GRAMD2B, LOC101927488	rs73330467-G	0.07	5E-6		11.58	NR	Illumina [336151] (imputed)	N
1544	chr5	125737938	125737939	rs4836254	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5q23.2	ALDH7A1	rs4836254-?	NR	6E-6	(serine)	0.20837158	[0.12-0.3] unit increase	Affymetrix [at least 2500000] (imputed)	N
1544	chr5	125773332	125773333	rs75029938	31092297	Guan M	2019-05-15	Hum Genomics	Genome-wide association study identifies novel loci for type 2 diabetes-attributed end-stage kidney disease in African Americans.	Type 2 diabetes and end-stage kidney disease in APOL1 risk genotype negative individuals	2,768 African-American cases, 6,059 African-American controls	NA	5q23.2	GRAMD3	rs75029938-T	0.042	2E-9	(corrected for genomic control)	1.89	[1.54-2.34]	Affymetrix, Illumina [NR] (imputed)	N
1545	chr5	125841326	125841326	rs577104594	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	5q23.2	NR	rs577104594-I	0.44506	3E-10		0.01292	[0.0089-0.017] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
1545	chr5	125843368	125843369	rs6595714	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	5q23.2		rs6595714-T	0.444611	2E-9		0.013443569	[0.0091-0.0178] unit increase	Affymetrix [93095623] (imputed)	N
1545	chr5	125843368	125843369	rs6595714	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	5q23.2		rs6595714-T	0.444549	1E-10		0.014265438	[0.0099-0.0186] unit increase	Affymetrix [93095623] (imputed)	N
1545	chr5	125848355	125848356	rs77885874	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	5q23.2	intergenic	rs77885874-G	0.005	7E-6		7.7	[2.7-21.93]	Illumina [1556551]	N
1545	chr5	125850171	125850172	rs536851767	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	5q23.2	NR	rs536851767-?	NR	5E-6		1.41852	[0.81-2.03] unit increase	NR [13958389] (imputed)	N
1545	chr5	125873803	125873804	rs62391507	33407418	Jonsson A	2021-01-06	BMC Med Genomics	Genome-wide association study of circulating levels of glucagon during an oral glucose tolerance test.	Glucagon levels in response to oral glucose tolerance test (120 minutes)	553 European ancestry individuals, 1,346 individuals	NA	5q23.2	NR	rs62391507-T	0.1152	9E-6		0.2559	[0.14-0.37] unit increase	Illumina [NR] (imputed)	N
1545	chr5	125892928	125892929	rs6898559	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (90 or 130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	5q23.2	ALDH7A1	rs6898559-?	NR	5E-7		0.09	[0.041-0.139] unit increase	Illumina [at least 13000000] (imputed)	N
1545	chr5	125918147	125918148	rs13182402	20072603	Guo Y	2010-01-08	PLoS Genet	Genome-wide association study identifies ALDH7A1 as a novel susceptibility gene for osteoporosis.	Osteoporosis	350 Han Chinese ancestry cases, 350 Han Chinese ancestry controls	390 Han Chinese ancestry cases, 516 Han Chinese ancestry controls	5q23.2	ALDH7A1	rs13182402-G	0.05	2E-9		2.25	[1.72-2.94]	Affymetrix [281533]	N
1545	chr5	125950478	125950479	rs140212011	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota alpha diversity (Simpson index)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	5q23.2		rs140212011-T	NR	3E-6		4.670578	z score decrease	Affymetrix, Illumina [NR] (imputed)	N
1545	chr5	125950478	125950479	rs140212011	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota alpha diversity (Shannon index)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	5q23.2		rs140212011-T	NR	6E-6		4.516646	z score decrease	Affymetrix, Illumina [NR] (imputed)	N
1545	chr5	125958026	125958027	rs149898505	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Bipolar disorder	11,897 European ancestry female cases, 15,538 European ancestry female controls, 8,027 European ancestry male cases, 15,009 European ancestry male controls	NA	5q23.2	PHAX	rs149898505-T	0.9605	9E-6	(male)	0.3025	[0.17-0.44] unit decrease	NR [NR] (imputed)	N
1546	chr5	125988174	125988175	rs12659017	30529582	Lu Y	2018-12-06	Gastroenterology	Large-scale Genome-wide Association Study of East Asians Identifies Loci Associated With Risk for Colorectal Cancer.	Colorectal cancer	22,775 East Asian ancestry cases, 47,731 East Asian ancestry controls	NA	5q23.2	ALDH7A1, PHAX	rs12659017-G	0.232	4E-8		1.09	[1.06-1.12]	Affymetrix, Illumina [up to 10700000] (imputed)	N
1546	chr5	126022098	126022099	rs60984441	34112972	DeMichele-Sweet MAA	2021-06-10	Mol Psychiatry	Genome-wide association identifies the first risk loci for psychosis in Alzheimer disease.	Psychosis in Alzheimer's disease	4,551 European ancestry cases, 5,796 European ancestry controls, 894 African American or unknown ancestry cases, 1,076 African American or unknown ancestry controls	NA	5q23.2		rs60984441-A	NR	2E-6		0.86	[0.81-0.92]	Illumina [7105229] (imputed)	N
1546	chr5	126032963	126032964	rs1546498	23166209	Smith JG	2012-11-19	Circ Cardiovasc Genet	Impact of ancestry and common genetic variants on QT interval in African Americans.	QT interval	13,105 African American individuals	NA	5q23.2	NR	rs1546498-C	0.61	2E-6		7.69	[4.57-10.81] unit increase	Affymetrix, Illumina [2800000] (imputed)	N
1546	chr5	126055066	126055067	rs907195	30621171	Coltell O	2019-01-04	Nutrients	Genome-Wide Association Study (GWAS) on Bilirubin Concentrations in Subjects with Metabolic Syndrome: Sex-Specific GWAS Analysis and Gene-Diet Interactions in a Mediterranean Population.	Serum bilirubin levels x Mediterranean diet adherence interaction in metabolic syndrome	257 European ancestry individuals with low adherence to Mediterranean diet, 161 European ancestry individuals with high adherence to Mediterranean diet	NA	5q23.2	intergenic	rs907195-C	0.253	6E-6				Illumina [622468]	N
1546	chr5	126068499	126068500	rs6885843	33037222	Sieh W	2020-10-09	Nat Commun	Identification of 31 loci for mammographic density phenotypes and their associations with breast cancer risk.	Percent mammographic density	24,192 European ancestry individuals	NA	5q23.2		rs6885843-?	NR	1E-6		0.036	[0.022-0.05] unit increase	Affymetrix [9906178] (imputed)	N
1546	chr5	126068499	126068500	rs6885843	33037222	Sieh W	2020-10-09	Nat Commun	Identification of 31 loci for mammographic density phenotypes and their associations with breast cancer risk.	Mammographic density (dense area)	24,192 European ancestry individuals	NA	5q23.2		rs6885843-?	NR	4E-8		0.048	[0.03-0.066] unit increase	Affymetrix [9906178] (imputed)	N
1546	chr5	126086316	126086317	rs36014135	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 2 levels	252 European ancestry individuals	NA	5q23.2		rs36014135-A	NR	4E-6		0.68425	[0.4-0.97] unit decrease	Illumina [NR] (imputed)	N
1546	chr5	126087711	126087712	rs1533106	26242244	Ma Y	2015-08-05	Sci Rep	Association of chromosome 5q21.3 polymorphisms with the exploratory eye movement dysfunction in schizophrenia.	Exploratory eye movement dysfunction in schizophrenia (total eye scanning length)	128 Han Chinese ancestry cases	NA	5q23.2	NR	rs1533106-?		3E-6		83.03	[47.2-118.86] unit decrease	Illumina [498648]	N
1547	chr5	126091427	126091428	rs2271352	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	349,856 European ancestry individuals, 91,908 East Asian ancestry individuals	NA	5q23.2		rs2271352-C	NR	6E-16		0.0178	[0.013-0.022] unit increase	Affymetrix, Illumina [20529536] (imputed)	N
1547	chr5	126091427	126091428	rs2271352	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	5q23.2	RP11-434D11.4	rs2271352-C	0.225719	1E-70		0.047604483	[0.042-0.053] unit increase	Affymetrix [93095623] (imputed)	N
1547	chr5	126091427	126091428	rs2271352	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	5q23.2	RP11-434D11.4	rs2271352-C	0.225741	3E-64		0.045365375	[0.04-0.051] unit increase	Affymetrix [93095623] (imputed)	N
1547	chr5	126091427	126091428	rs2271352	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q23.2	NR	rs2271352-C	0.225431	5E-63				Affymetrix, Illumina [19905671] (imputed)	N
1547	chr5	126091427	126091428	rs2271352	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	5q23.2	NR	rs2271352-C	0.225593	1E-65		0.042265	[0.037-0.047] SD unit increase	Affymetrix, Illumina [50036608] (imputed)	N
1547	chr5	126091427	126091428	rs2271352	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count (basophil)	171,846 European ancestry individuals	NA	5q23.2	RP11-434D11.4	rs2271352-C	0.2281	1E-25		0.04430282	[0.036-0.053] unit increase	Affymetrix [~ 2500000] (imputed)	N
1547	chr5	126091427	126091428	rs2271352	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of white cells	171,996 European ancestry individuals	NA	5q23.2	RP11-434D11.4	rs2271352-C	0.2282	1E-28		0.04656434	[0.038-0.055] unit increase	Affymetrix [~ 2500000] (imputed)	N
1547	chr5	126091427	126091428	rs2271352	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of granulocytes	170,223 European ancestry individuals	NA	5q23.2	RP11-434D11.4	rs2271352-C	0.2281	3E-26		0.04481819	[0.037-0.053] unit increase	Affymetrix [~ 2500000] (imputed)	N
1547	chr5	126096640	126096641	rs6867793	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5q23.2		rs6867793-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1547	chr5	126116199	126116200	rs140680370	31752434	Costa-Urrutia P	2019-11-19	Genes (Basel)	Genome-Wide Association Study of Body Mass Index and Body Fat in Mexican-Mestizo Children.	Body fat percentage	828 Mexican-Mestizo ancestry children	NA	5q23.2	LMNB1	rs140680370-A	0.012	1E-8		0.2	NR unit increase	Affymetrix [~ 2500000] (imputed)	N
1547	chr5	126137557	126137558	rs147567364	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid respiratory support vs population)	495 European ancestry cases, 680,440 European ancestry controls, 102 Hispanic or Latin American cases, 94,330 Hispanic or Latin American controls, 39 Black or African American cases, 22,410 Black or African American controls	NA	5q23.2		rs147567364-?	NR	2E-6		0.9406806	[0.55-1.33] unit decrease	Illumina [9842460] (imputed)	N
1547	chr5	126161689	126161690	rs36105360	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LMNB1	5,330 Icelandic ancestry individuals	NA	5q23.2		rs36105360-T	0.02396	2E-21		0.495124	[0.39-0.6] unit increase	Illumina [7506463] (imputed)	N
1547	chr5	126161689	126161690	rs36105360	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	5q23.2	LMNB1	rs36105360-C	0.9821875	3E-9	(LMNB1, 3889_64_2)	0.56049275	[0.38-0.75] unit decrease	Illumina [> 1000000] (imputed)	N
1547	chr5	126161689	126161690	rs36105360	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5q23.2	LMNB1	rs36105360-T	0.025	2E-24	(Lamin-B1, LMNB1.3889.64.2)	0.8	[0.64-0.96] unit increase	Affymetrix [10572788] (imputed)	N
1547	chr5	126174944	126174945	rs72780278	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	5q23.2		rs72780278-?	NR	9E-8				NR [~ 8900000] (imputed)	N
1547	chr5	126181861	126181862	rs959573	22658654	Chung SJ	2012-05-30	Parkinsonism Relat Disord	Genomic determinants of motor and cognitive outcomes in Parkinson's disease.	Parkinson's disease (motor and cognition)	443 European ancestry cases	NA	5q23.2	LMNB1	rs959573-?	NR	5E-6	(cognitive outcome)	1.92	[1.49-2.50]	NR [198345]	N
1548	chr5	126250811	126250812	rs34821177	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	5q23.2	MARCH3	rs34821177-T	0.027245	2E-10		0.04349175	[0.03-0.057] unit increase	Affymetrix [93095623] (imputed)	N
1548	chr5	126259177	126259178	rs6860726	31809533	Han X	2019-09-06	Hum Mol Genet	Genome-wide association analysis of 95 549 individuals identifies novel loci and genes influencing optic disc morphology.	Optic disc size	67,040 British ancestry individuals	28,509 European ancestry individuals	5q23.2	MARCH3	rs6860726-C	0.49	1E-8		0.01	unit decrease	Affymetrix [8928767] (imputed)	N
1548	chr5	126267350	126267351	rs12655258	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	5q23.2	MARCH3	rs12655258-?	NR	4E-10	(HDL2_C)	0.07294288	NR unit decrease	Illumina [609262]	N
1548	chr5	126267350	126267351	rs12655258	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	5q23.2	MARCH3	rs12655258-?	NR	2E-6	(HDL2_C)	0.0697259	NR unit decrease	Illumina [609262]	N
1548	chr5	126267601	126267602	rs77016412	31752434	Costa-Urrutia P	2019-11-19	Genes (Basel)	Genome-Wide Association Study of Body Mass Index and Body Fat in Mexican-Mestizo Children.	Body fat percentage	828 Mexican-Mestizo ancestry children	NA	5q23.2	MARCH3	rs77016412-A	0.011	9E-8		0.2	NR unit increase	Affymetrix [~ 2500000] (imputed)	N
1548	chr5	126344881	126344882	rs116653568	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	5q23.2	NR	rs116653568-G	0.0110835123944007	3E-6	(G_Odoribacter_HB)	1.38813	[0.81-1.97] unit decrease	Illumina [7711310] (imputed)	N
1549	chr5	126356041	126356042	rs11960799	32794382	Cho SB	2020-07-28	Diabetes Metab J	Exome Chip Analysis of 14,026 Koreans Reve-als Known and Newly Discovered Genetic Loci Associated with Type 2 Diabetes Mellitus.	Type 2 diabetes	14,026 Korean ancestry individuals	NA	5q23.2	MARCH3	rs11960799-?	0.65	1E-7		1.2195122	[1.14-1.32]	Illumina [up to 242901]	N
1549	chr5	126369253	126369254	rs12656223	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	5q23.2	NR	rs12656223-?	NR	3E-11				Affymetrix [NR]	N
1549	chr5	126409092	126409093	rs145648292	33482370	Kim SK	2021-01-19	J Shoulder Elbow Surg	A Genome Wide Association Study For Shoulder Impingement and Rotator Cuff Disease.	Shoulder impingement or rotator cuff tear	3,864 European ancestry shoulder impingement cases, 5,701 European ancestry rotator cuff tear cases, up to 614,568 European ancestry controls	NA	5q23.2	C5orf63	rs145648292-A	0.006	3E-9		1.5927	NR	Affymetrix [up to 17556449] (imputed)	N
1549	chr5	126433134	126433135	rs3936304	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	5q23.2		rs3936304-T	0.47	1E-9		6.1	z score increase	Affymetrix [9061022] (imputed)	N
1549	chr5	126433163	126433164	rs3936305	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	5q23.2		rs3936305-?	NR	1E-14				NR [~ 8900000] (imputed)	N
1550	chr5	126502083	126502084	rs10076402	33693626	Jamieson SE	2021-03-09	Clin Infect Dis	Common and rare genetic variants that could contribute to severe otitis media in an Australian Aboriginal population.	Otitis media	21 Martu ancestry cases, 370 Martu ancestry controls	NA	5q23.2		rs10076402-A	NR	5E-6				Illumina [6724284] (imputed)	N
1550	chr5	126510167	126510168	rs248083	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	5q23.2	LOC10013031	rs248083-A	NR	5E-6	(EA)	1.0542	[1.03-1.08]	Illumina [6627481] (imputed)	N
1550	chr5	126510167	126510168	rs248083	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	5q23.2	LOC10013031	rs248083-A	NR	2E-7		1.054	[1.03-1.07]	Illumina [6627481] (imputed)	N
1550	chr5	126510167	126510168	rs248083	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	5q23.2	intergenic	rs248083-A	NR	6E-8		1.055	[1.04-1.07]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1550	chr5	126513658	126513659	rs58186489	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	5q23.2	NR	rs58186489-C	NR	1E-9		0.0146	[0.0099-0.0193] unit increase	Affymetrix [9000000] (imputed)	N
1550	chr5	126513658	126513659	rs58186489	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	5q23.2	NR	rs58186489-C	NR	8E-10		0.0148	[0.01-0.02] unit decrease	Affymetrix [9000000] (imputed)	N
1550	chr5	126541478	126541479	rs6894083	28355232	Ward-Caviness CK	2017-03-29	PLoS One	A genome-wide trans-ethnic interaction study links the PIGR-FCAMR locus to coronary atherosclerosis via interactions between genetic variants and residential exposure to traffic.	Coronary atherosclerosis (increased number of diseased vessels) (traffic exposure interaction)	1,562 European ancestry individuals, 538 African American individuals	NA	5q23.2	NR	rs6894083-?	NR	4E-6				Illumina [at least 756588]	N
1550	chr5	126546210	126546211	rs6892256	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	5q23.2		rs6892256-T	NR	7E-10		0.0122	[0.0083-0.0161] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
1550	chr5	126551731	126551732	rs7720606	30958311	Tao F	2019-04-03	J Neuromuscul Dis	Modifier Gene Candidates in Charcot-Marie-Tooth Disease Type 1A: A Case-Only Genome-Wide Association Study.	Hearing loss in Charcot-Marie-Tooth disease 1A	61 European ancestry severe cases, 303 European ancestry mild cases	NA	5q23.2	C5orf63, MEGF10, MARCH3	rs7720606-A	0.482	2E-7		3.439	[2.157-5.842]	Illumina [600000]	N
1551	chr5	126623635	126623636	rs10478767	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	5q23.2	NA	rs10478767-T		3E-9		0.0107494	[0.0072-0.0143] unit decrease	Illumina [13288253] (imputed)	N
1551	chr5	126624399	126624400	rs7733373	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	5q23.2	MEGF10	rs7733373-A	0.4887	2E-14		0.0145	[0.011-0.018] unit increase	Affymetrix [18391927] (imputed)	N
1551	chr5	126721852	126721853	rs10519937	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	5q23.2	NR	rs10519937-C	0.831854334233018	9E-6	(IGP2)	0.188	[0.11-0.27] unit decrease	Illumina [~ 2500000] (imputed)	N
1551	chr5	126729449	126729450	rs143954261	23535033	Sherva R	2013-03-24	Alzheimers Dement	Genome-wide association study of the rate of cognitive decline in Alzheimer's disease.	Alzheimer's disease (cognitive decline)	303 European ancestry cases		5q23.2	MEGF10	rs143954261-?	0.04	8E-7		0.29	unit decrease	Illumina [NR] (imputed)	N
1551	chr5	126739076	126739077	rs570805174	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q23.2	NR	rs570805174-T	0.01045	9E-9	(EIF3A)	0.1012	NR unit increase	Illumina [1671387] (imputed)	N
1551	chr5	126744987	126744988	rs17673474	31586183	Niazi Y	2019-10-04	Mutagenesis	Distinct pathways associated with chromosomal aberration frequency in a cohort exposed to genotoxic compounds compared to general population.	Chromosomal aberration frequency (chromosome type) in genotoxic compound exposure	607 European and unknown ancestry individuals	NA	5q23.2	MEGF10	rs17673474-?	NR	3E-6		0.22	[0.13-0.30] unit increase	Illumina [> 2600000] (imputed)	N
1552	chr5	126763086	126763087	rs17604996	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Rectal cancer	2,091 European ancestry cases, 410,350 European ancestry controls	NA	5q23.2		rs17604996-G	0.03886	1E-7		1.4509577	NR	Affymetrix [7846216] (imputed)	N
1552	chr5	126790840	126790841	rs72790443	29503163	Yu H	2018-03-01	Lancet Psychiatry	Five novel loci associated with antipsychotic treatment response in patients with schizophrenia: a genome-wide association study.	Response to antipsychotic treatment in schizophrenia	2,413 Han Chinese ancestry cases	1,379 Han Chinese ancestry cases	5q23.2	MEGF10	rs72790443-T	0.09	1E-9		5.64	[3.82-7.46] unit decrease	Illumina [6097251] (imputed)	N
1552	chr5	126791281	126791282	rs17164935	31790847	Hou R	2019-11-29	Bone	Genetic variants affecting bone mineral density and bone mineral content at multiple skeletal sites in Hispanic children.	Bone mineral content	1,030 Hispanic or Latin American children	NA	5q23.2	MEGF10	rs17164935-A	0.07	6E-7	(left arm)	0.45	[0.27-0.63] g increase	Illumina [> 1100000]	N
1552	chr5	126791281	126791282	rs17164935	31790847	Hou R	2019-11-29	Bone	Genetic variants affecting bone mineral density and bone mineral content at multiple skeletal sites in Hispanic children.	Bone mineral content	1,030 Hispanic or Latin American children	NA	5q23.2	MEGF10	rs17164935-A	0.07	2E-6	(total body)	0.43	[0.25-0.61] g increase	Illumina [> 1100000]	N
1552	chr5	126791281	126791282	rs17164935	31790847	Hou R	2019-11-29	Bone	Genetic variants affecting bone mineral density and bone mineral content at multiple skeletal sites in Hispanic children.	Bone mineral content	1,030 Hispanic or Latin American children	NA	5q23.2	MEGF10	rs17164935-A	0.07	2E-6	(right arm)	0.43	[0.25-0.61] g increase	Illumina [> 1100000]	N
1552	chr5	126813463	126813464	rs150192045	29503163	Yu H	2018-03-01	Lancet Psychiatry	Five novel loci associated with antipsychotic treatment response in patients with schizophrenia: a genome-wide association study.	Response to antipsychotic treatment in schizophrenia	2,413 Han Chinese ancestry cases	1,379 Han Chinese ancestry cases	5q23.2	MEGF10	rs150192045-C	0.04	2E-6		6.64	[3.92-9.36] unit decrease	Illumina [6097251] (imputed)	N
1552	chr5	126822291	126822292	rs17164896	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5q23.2	PRRC1	rs17164896-?	NR	8E-6	(ribose 5 P; ribulose 5 P)	0.61807054	[0.35-0.89] unit increase	Affymetrix [at least 2500000] (imputed)	N
1552	chr5	126850026	126850027	rs233042	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5q23.2		rs233042-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1552	chr5	126857713	126857714	rs31190	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	5q23.2	NR	rs31190-C	0.392	3E-6	(IFNalpha_STAT1_of_Monocytes)			Illumina [5084123] (imputed)	N
1552	chr5	126869655	126869656	rs189809079	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	5q23.2	NR	rs189809079-?	NR	8E-6		0.0086838	[0.0049-0.0125] unit increase	Affymetrix [805426] (imputed)	N
1553	chr5	126968589	126968590	rs10075092	32579418	Maukonen M	2020-06-24	J Biol Rhythms	Genetic Associations of Chronotype in the Finnish General Population.	Evening vs. morning chronotype (self-assessed)	3,759 Finnish ancestry evening individuals , 4,674 Finnish ancestry morning individuals	NA	5q23.2	intergenic	rs10075092-A	NR	9E-6		1.22755	[1.1216-1.34351]	Illumina [5842835] (imputed)	N
1553	chr5	126978107	126978108	rs11241936	24535457	Chouraki V	2014-02-18	Mol Psychiatry	A genome-wide association meta-analysis of plasma A? peptides concentrations in the elderly.	Plasma amyloid beta peptide concentrations (ABx-42)	3,528 European ancestry individuals	NA	5q23.2	CTXN3	rs11241936-C	0.312	2E-7		0.08	[0.041-0.119] unit increase	Illumina [2316178] (imputed)	N
1554	chr5	127054277	127054278	rs4835929	23527680	Ebejer JL	2013-04-01	Twin Res Hum Genet	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (hyperactivity-impulsivity symptoms)	1,851 individuals	155 individuals	5q23.2	NR	rs4835929-T		7E-6				Illumina [2373249] (imputed)	N
1554	chr5	127059941	127059942	rs12513840	23527680	Ebejer JL	2013-04-01	Twin Res Hum Genet	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (hyperactivity-impulsivity symptoms)	1,851 individuals	155 individuals	5q23.2	NR	rs12513840-A		7E-6				Illumina [2373249] (imputed)	N
1554	chr5	127061970	127061971	rs12523164	23527680	Ebejer JL	2013-04-01	Twin Res Hum Genet	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (hyperactivity-impulsivity symptoms)	1,851 individuals	155 individuals	5q23.2	NR	rs12523164-T		6E-6				Illumina [2373249] (imputed)	N
1554	chr5	127067679	127067680	rs187509276	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	5q23.2		rs187509276-?	NR	6E-10				NR [~ 8900000] (imputed)	N
1554	chr5	127069126	127069127	rs2673748	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	5q23.2		rs2673748-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1554	chr5	127110485	127110486	rs10463832	23527680	Ebejer JL	2013-04-01	Twin Res Hum Genet	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (hyperactivity-impulsivity symptoms)	1,851 individuals	155 individuals	5q23.2	NR	rs10463832-A		5E-6				Illumina [2373249] (imputed)	N
1554	chr5	127122311	127122312	rs10463833	23527680	Ebejer JL	2013-04-01	Twin Res Hum Genet	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (hyperactivity-impulsivity symptoms)	1,851 individuals	155 individuals	5q23.2	NR	rs10463833-A		5E-6				Illumina [2373249] (imputed)	N
1554	chr5	127125761	127125762	rs7722425	23527680	Ebejer JL	2013-04-01	Twin Res Hum Genet	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (hyperactivity-impulsivity symptoms)	1,851 individuals	155 individuals	5q23.2	NR	rs7722425-T		5E-6				Illumina [2373249] (imputed)	N
1554	chr5	127137355	127137356	rs114035254	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 18)	2,187 European ancestry individuals	NA	5q23.2	NR	rs114035254-T	0.01032	4E-6		0.692	[0.4-0.99] unit increase	Illumina [10677593] (imputed)	N
1554	chr5	127139615	127139616	rs1515641	23527680	Ebejer JL	2013-04-01	Twin Res Hum Genet	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (hyperactivity-impulsivity symptoms)	1,851 individuals	155 individuals	5q23.2	NR	rs1515641-A		4E-6				Illumina [2373249] (imputed)	N
1555	chr5	127143653	127143654	rs17696932	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Oral cavity and pharyngeal cancer	1,223 European ancestry cases, 410,350 European ancestry controls	NA	5q23.2		rs17696932-C	NR	3E-7		3.3288949	NR	Affymetrix [7846216] (imputed)	N
1555	chr5	127151975	127151976	rs1421746	22959728	Ahmeti KB	2012-09-05	Neurobiol Aging	Age of onset of amyotrophic lateral sclerosis is modulated by a locus on 1p34.1.	Amyotrophic lateral sclerosis (age of onset)	4,243 European ancestry cases	NA	5q23.2	intergenic	rs1421746-C	0.35	8E-6	(Joint)			Illumina [254145]	N
1555	chr5	127169211	127169212	rs245201	19023125	Potkin SG	2008-11-20	Schizophr Bull	A genome-wide association study of schizophrenia using brain activation as a quantitative phenotype.	Brain imaging in schizophrenia (dorsolateral prefrontal cortex interaction)	46 European ancestry cases, 60 European ancestry controls, 18 cases, 14 controls	NA	5q23.2	SLC12A2, CTXN3	rs245201-?	0.32	9E-8				Illumina [302783]	N
1555	chr5	127213046	127213047	rs7729769	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	5q23.2	CCDC192	rs7729769-A	0.5048	5E-11		0.0148	[0.01-0.019] unit increase	Affymetrix [18391927] (imputed)	N
1555	chr5	127213624	127213625	rs2764766	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	5q23.2	LOC728586	rs2764766-C	NR	2E-8		1.055	[1.04-1.07]	Illumina [6627481] (imputed)	N
1555	chr5	127213624	127213625	rs2764766	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	5q23.2	LINC01184	rs2764766-C	NR	2E-8		1.055	[1.04-1.07]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1555	chr5	127214343	127214344	rs12332385	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	5q23.2	NR	rs12332385-T	NR	2E-6		1.0526316	[NR]	Illumina [7158791] (imputed)	N
1555	chr5	127237365	127237366	rs13166824	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	5q23.3		rs13166824-A	NR	2E-15		0.016	[0.012-0.02] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
1555	chr5	127238699	127238700	rs4836339	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	5q23.3		rs4836339-T	NR	1E-15		0.0166	[0.012-0.021] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
1555	chr5	127238699	127238700	rs4836339	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	5q23.3		rs4836339-T	NR	9E-14		0.0147	[0.011-0.019] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
1555	chr5	127238940	127238941	rs13155003	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q23.3	NR	rs13155003-C	0.215552	9E-21				Affymetrix, Illumina [24332387] (imputed)	N
1555	chr5	127238940	127238941	rs13155003	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q23.3	NR	rs13155003-C	0.214699	2E-18				Affymetrix, Illumina [24653286] (imputed)	N
1555	chr5	127238940	127238941	rs13155003	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q23.3	NR	rs13155003-C	0.213847	7E-20				Affymetrix, Illumina [24558453] (imputed)	N
1555	chr5	127239360	127239361	rs7708799	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	5q23.3		rs7708799-?	NR	1E-14				NR [~ 8900000] (imputed)	N
1555	chr5	127249135	127249136	rs9327454	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	5q23.3	CTC-228N24.1	rs9327454-G	0.182817	8E-14		0.021448685	[0.016-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1555	chr5	127249135	127249136	rs9327454	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	5q23.3	CTC-228N24.1	rs9327454-G	0.182806	9E-13		0.020552251	[0.015-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1555	chr5	127249135	127249136	rs9327454	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	5q23.3	CTC-228N24.1	rs9327454-G	0.182813	1E-15		0.023049787	[0.017-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
1555	chr5	127249193	127249194	rs9327455	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	5q23.3	NR	rs9327455-A	0.183764	6E-17		0.020128	[0.015-0.025] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1555	chr5	127249193	127249194	rs9327455	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	5q23.3	NR	rs9327455-A	0.1838	1E-15		0.019125	[0.014-0.024] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
1555	chr5	127249193	127249194	rs9327455	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	5q23.3	NR	rs9327455-A	0.183771	2E-18		0.020948	[0.016-0.026] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
1556	chr5	127347814	127347815	rs1003136	26926045	Adhikari K	2016-03-01	Nat Commun	A genome-wide association scan in admixed Latin Americans identifies loci influencing facial and scalp hair features.	Beard thickness	2,922 Latin American individuals	NA	5q23.3	FBN2, LINC01184, SLC12A2	rs1003136-?	NR	1E-6				Illumina [9143600] (imputed)	N
1556	chr5	127349744	127349745	rs35897671	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	5q23.3	NR	rs35897671-?	NR	4E-8	(male)	0.20193	[0.13-0.27] unit increase	Affymetrix [7794483] (imputed)	N
1556	chr5	127349744	127349745	rs35897671	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	5q23.3	NR	rs35897671-?	NR	3E-11		0.15437	[0.11-0.2] unit increase	Affymetrix [7794483] (imputed)	N
1556	chr5	127350122	127350123	rs1124235	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	5q23.3	FLJ33630	rs1124235-A	0.8125	9E-13		0.277	[0.2-0.35] mmHg decrease	Affymetrix [NR] (imputed)	N
1556	chr5	127350548	127350549	rs3749748	33662382	Rogne T	2021-03-01	J Invest Dermatol	Genome-Wide Association Study Identifies LINC01184/SLC12A2 As Risk Locus for Skin and Soft Tissue Infections.	Skin and soft tissue infections	6,107 European ancestry cases and 399,239 European ancestry controls	1,657 European ancestry cases and 67,522 European ancestry controls	5q23.3	LINC01184	rs3749748-T	0.248	4E-18		1.18	[1.14-1.23]	Affymetrix, Illumina [9211777] (imputed)	N
1556	chr5	127350548	127350549	rs3749748	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	5q23.3	NR	rs3749748-T	0.245908	3E-11		0.014226	[0.01-0.018] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1556	chr5	127350548	127350549	rs3749748	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	5q23.3	SLC12A2	rs3749748-C	0.752736	8E-14		0.0165751	[0.012-0.021] unit decrease	Affymetrix [NR] (imputed)	N
1556	chr5	127350548	127350549	rs3749748	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	5q23.3	SLC12A2	rs3749748-C	0.752742	4E-22		0.0220869	[0.018-0.027] unit decrease	Affymetrix [NR] (imputed)	N
1556	chr5	127350548	127350549	rs3749748	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red cell distribution width	9,611 European ancestry individuals	NA	5q23.3		rs3749748-?	0.7575	5E-7		0.1244	[0.076-0.173] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
1556	chr5	127350548	127350549	rs3749748	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red cell distribution width	6,141 African American individuals, 17,272 Hispanic or Latin American individuals, 9,611 European ancestry individuals, 123 Asian ancestry individuals, 20 Native American ancestry individuals, 382 individuals	NA	5q23.3		rs3749748-?	0.7953	2E-33		0.1218	[0.1-0.14] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
1556	chr5	127350548	127350549	rs3749748	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red cell distribution width	17,272 Hispanic or Latin American individuals	NA	5q23.3		rs3749748-?	0.8383	3E-16		0.1173	[0.089-0.145] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
1556	chr5	127350548	127350549	rs3749748	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	5q23.3		rs3749748-?	NR	1E-300				NR [~ 8900000] (imputed)	N
1556	chr5	127350548	127350549	rs3749748	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	5q23.3	NR	rs3749748-T	0.236	1E-14		0.0162	[0.012-0.02] unit decrease	NR [~ 27400000] (imputed)	N
1556	chr5	127352806	127352807	rs62373688	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	5q23.3	CTC-228N24.3	rs62373688-A	0.129	5E-12		0.2607	[0.19-0.33] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1556	chr5	127357525	127357526	rs17764730	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	5q23.3		rs17764730-T	NR	5E-16		0.0193	[0.015-0.024] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
1556	chr5	127357525	127357526	rs17764730	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Sex hormone-binding globulin levels	389,354 European ancestry individuals	NA	5q23.3		rs17764730-C	0.75	2E-21		0.021	nmol/L decrease	NR [NR] (imputed)	N
1556	chr5	127357525	127357526	rs17764730	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	5q23.3		rs17764730-C	0.75	2E-12				NR [NR] (imputed)	N
1556	chr5	127357525	127357526	rs17764730	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	High density lipoprotein cholesterol levels	392,965 European ancestry individuals	NA	5q23.3		rs17764730-C	0.75	2E-15		0.017	mmol/L decrease	NR [NR] (imputed)	N
1556	chr5	127357525	127357526	rs17764730	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	5q23.3		rs17764730-C	0.75	8E-12		0.012	% increase	NR [NR] (imputed)	N
1556	chr5	127357525	127357526	rs17764730	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Aspartate aminotransferase levels	424,778 European ancestry individuals	NA	5q23.3		rs17764730-C	0.75	3E-6		0.01	U/L increase	NR [NR] (imputed)	N
1556	chr5	127357525	127357526	rs17764730	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Alanine aminotransferase levels	429,203 European ancestry individuals	NA	5q23.3		rs17764730-C	0.75	8E-11		0.014	U/L increase	NR [NR] (imputed)	N
1556	chr5	127357525	127357526	rs17764730	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	5q23.3	NR	rs17764730-T	0.247399	5E-56		0.122583	[0.11-0.14] unit increase	Affymetrix [17914406] (imputed)	N
1556	chr5	127357525	127357526	rs17764730	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	5q23.3		rs17764730-?	NR	2E-13				NR [~ 8900000] (imputed)	N
1556	chr5	127357525	127357526	rs17764730	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	5q23.3		rs17764730-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1556	chr5	127364125	127364126	rs72792276	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	5q23.3	CTC-228N24.3	rs72792276-A	0.094712	3E-20		0.035437714	[0.028-0.043] unit increase	Affymetrix [93095623] (imputed)	N
1556	chr5	127364125	127364126	rs72792276	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	5q23.3	CTC-228N24.3	rs72792276-A	0.0947	3E-41		0.08087002	[0.069-0.093] unit increase	Affymetrix [~ 2500000] (imputed)	N
1556	chr5	127367997	127367998	rs6860245	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Varicose veins	22,037 European ancestry cases, 437,665 European ancestry controls, 474 East Asian ancestry cases, 178,252 East Asian ancestry controls	NA	5q23.3		rs6860245-C	NR	1E-33		0.159	[0.13-0.18] unit increase	Affymetrix, Illumina [25842955] (imputed)	N
1556	chr5	127367997	127367998	rs6860245	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	5q23.3		rs6860245-C	NR	1E-13		0.0174	[0.013-0.022] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
1556	chr5	127367997	127367998	rs6860245	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	5q23.3		rs6860245-C	NR	1E-10		0.0151	[0.011-0.02] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
1556	chr5	127367997	127367998	rs6860245	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Red cell distribution width	10,184 White ancestry individuals, 44 Asian ancestry individuals, 6,776 Black individuals, 11,978 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	5q23.3		rs6860245-C	NR	2E-20		0.14	[0.1-0.18] unit decrease	Illumina [76131582]	N
1556	chr5	127367997	127367998	rs6860245	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	5q23.3	LINC01184	rs6860245-C	0.248	1E-159		0.0589	[0.055-0.063] unit increase	Affymetrix [18391927] (imputed)	N
1556	chr5	127367997	127367998	rs6860245	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	5q23.3	NR	rs6860245-C	0.24756100000000003	3E-30		0.0110404	[0.0091-0.0129] unit increase	Affymetrix [16582909] (imputed)	N
1556	chr5	127367997	127367998	rs6860245	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	5q23.3	NR	rs6860245-C	0.24709000000000003	1E-13		0.0106527	[0.0078-0.0135] unit increase	Affymetrix [16585854] (imputed)	N
1556	chr5	127367997	127367998	rs6860245	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	5q23.3	NR	rs6860245-C	0.24756100000000003	2E-20		0.00996602	[0.0078-0.0121] unit increase	Affymetrix [16582965] (imputed)	N
1556	chr5	127367997	127367998	rs6860245	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	5q23.3	NR	rs6860245-C	0.24709000000000003	2E-10		0.0107054	[0.0075-0.0139] unit increase	Affymetrix [16585866] (imputed)	N
1556	chr5	127367997	127367998	rs6860245	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	5q23.3		rs6860245-?	NR	4E-11				NR [~ 8900000] (imputed)	N
1556	chr5	127378293	127378294	rs6887276	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	5q23.3	SLC12A2	rs6887276-C	0.546	1E-9		0.018	[0.012-0.024] unit decrease	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
1556	chr5	127382301	127382302	rs146579248	23535033	Sherva R	2013-03-24	Alzheimers Dement	Genome-wide association study of the rate of cognitive decline in Alzheimer's disease.	Alzheimer's disease (cognitive decline)	303 European ancestry cases		5q23.3	FLJ33630	rs146579248-?	0.04	4E-7		0.21	unit decrease	Illumina [NR] (imputed)	N
1556	chr5	127388843	127388844	rs2250127	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	5q23.3		rs2250127-G	0.753	6E-16				Affymetrix [10369434] (imputed)	N
1556	chr5	127388843	127388844	rs2250127	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	5q23.3		rs2250127-G	0.753	2E-16				Affymetrix [10369434] (imputed)	N
1556	chr5	127388843	127388844	rs2250127	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	5q23.3	CTC-228N24.3	rs2250127-A	NR	6E-9		0.0191874	[0.013-0.026] unit decrease	Affymetrix [321169] (imputed)	N
1556	chr5	127388843	127388844	rs2250127	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	5q23.3	CTC-228N24.3	rs2250127-A	0.247245	2E-11		0.017222827	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1556	chr5	127388843	127388844	rs2250127	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	5q23.3	CTC-228N24.3	rs2250127-A	0.247227	3E-13		0.018723927	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1556	chr5	127388843	127388844	rs2250127	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	5q23.3	FLJ33630	rs2250127-A	NR	6E-7				Illumina [up to 11995908] (imputed)	N
1556	chr5	127394008	127394009	rs17607234	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5q23.3		rs17607234-?	NR	2E-39				NR [~ 8900000] (imputed)	N
1557	chr5	127406258	127406259	rs6888037	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	5q23.3	NR	rs6888037-T	NR	3E-9		0.0165	[0.011-0.022] unit increase	Affymetrix [9000000] (imputed)	N
1557	chr5	127406258	127406259	rs6888037	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	5q23.3	NR	rs6888037-T	0.75242	3E-10		0.071889	[0.05-0.094] unit decrease	Affymetrix [21375087] (imputed)	N
1557	chr5	127408682	127408683	rs6595799	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	5q23.3	CTC-228N24.3	rs6595799-C	NR	3E-9		0.0211763	[0.014-0.028] unit decrease	Affymetrix [323858] (imputed)	N
1557	chr5	127408682	127408683	rs6595799	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	5q23.3	CTC-228N24.3	rs6595799-C	NR	4E-9		0.0209288	[0.014-0.028] unit decrease	Affymetrix [127266] (imputed)	N
1557	chr5	127412167	127412168	rs183890038	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	5q23.3		rs183890038-?	NR	3E-12				NR [~ 8900000] (imputed)	N
1557	chr5	127418849	127418850	rs3812049	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	5q23.3		rs3812049-G	NR	3E-22		0.0264	[0.021-0.032] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
1557	chr5	127418849	127418850	rs3812049	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	5q23.3	CTC-228N24.3	rs3812049-G	0.741671	6E-452		0.117117465	[0.11-0.12] unit increase	Affymetrix [93095623] (imputed)	N
1557	chr5	127418849	127418850	rs3812049	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	5q23.3	CTC-228N24.3	rs3812049-G	0.741699	6E-28		0.027801141	[0.023-0.033] unit increase	Affymetrix [93095623] (imputed)	N
1557	chr5	127418849	127418850	rs3812049	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q23.3	NR	rs3812049-G	0.735194	4E-32				Affymetrix, Illumina [23472807] (imputed)	N
1557	chr5	127418849	127418850	rs3812049	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	5q23.3	NR	rs3812049-G	0.742389	4E-34		0.027278	[0.023-0.032] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1557	chr5	127418849	127418850	rs3812049	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	5q23.3	SLC12A2	rs3812049-C	0.257365	7E-6	(males)	0.01435	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1557	chr5	127418849	127418850	rs3812049	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	5q23.3	SLC12A2	rs3812049-C	0.257365	7E-16		0.02197	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1557	chr5	127418849	127418850	rs3812049	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	5q23.3	SLC12A2	rs3812049-C	0.257365	1E-22	(males)	0.0348	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1557	chr5	127418849	127418850	rs3812049	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	5q23.3	SLC12A2	rs3812049-C	0.257365	6E-18	(males)	0.05541	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1557	chr5	127418849	127418850	rs3812049	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	5q23.3	SLC12A2	rs3812049-C	0.257365	2E-6	(females)	0.02132	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1557	chr5	127418849	127418850	rs3812049	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	5q23.3	SLC12A2	rs3812049-C	0.257365	2E-38		0.03673	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1557	chr5	127418849	127418850	rs3812049	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	5q23.3	CTC-228N24.3	rs3812049-G	0.7411	5E-274		0.1432103	[0.14-0.15] unit increase	Affymetrix [~ 2500000] (imputed)	N
1557	chr5	127418849	127418850	rs3812049	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	5q23.3	CTC-228N24.3	rs3812049-G	0.741	1E-9		0.02515204	[0.017-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
1557	chr5	127432908	127432908	rs10649697	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	5q23.3		rs10649697-TAGA	NR	2E-8		0.0141	[0.0092-0.019] unit increase	Affymetrix, Illumina [20528270] (imputed)	N
1557	chr5	127432908	127432908	rs10649697	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	5q23.3	NR	rs10649697-TAGA	NR	4E-14		0.022	[0.016-0.028] unit increase	Affymetrix [9000000] (imputed)	N
1557	chr5	127432908	127432908	rs10649697	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	8,166 South Asian ancestry individuals	NA	5q23.3	NR	rs10649697-?	0.309164	3E-13		0.124165	[0.091-0.157] SD units decrease	Affymetrix, Illumina [28471494] (imputed)	N
1557	chr5	127432908	127432908	rs10649697	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	5q23.3	NR	rs10649697-T	0.243955	2E-18		0.0111915	[0.0086-0.0138] unit increase	Affymetrix [16582621] (imputed)	N
1557	chr5	127432908	127432908	rs10649697	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	5q23.3	NR	rs10649697-T	0.243955	3E-11		0.00936533	[0.0066-0.0122] unit increase	Affymetrix [16582614] (imputed)	N
1557	chr5	127433797	127433798	rs1112956	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	5q23.3	NR	rs1112956-G	0.7711	9E-6	(EA)	0.0328	[0.018-0.047] unit decrease	Illumina [~ 11800000] (imputed)	N
1557	chr5	127441860	127441861	rs9327468	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	8,526 Hispanic or Latin American individuals	NA	5q23.3	NR	rs9327468-C	0.181402	1E-11		0.140336	[0.1-0.181] SD units decrease	Affymetrix, Illumina [26792043] (imputed)	N
1557	chr5	127448065	127448066	rs1560637	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	5q23.3		rs1560637-C	NR	2E-8		0.0116	[0.0077-0.0155] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
1557	chr5	127453734	127453735	rs7734927	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	5q23.3	SLC12A2	rs7734927-A	NR	2E-138		0.112536	[0.1-0.12] unit increase	Affymetrix [16832071] (imputed)	N
1557	chr5	127476970	127476971	rs1993878	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	5q23.3	SLC12A2	rs1993878-A	0.755134	4E-27		0.028075425	[0.023-0.033] unit increase	Affymetrix [93095623] (imputed)	N
1557	chr5	127487602	127487603	rs2568928	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	5q23.3	NR	rs2568928-G	0.755567	4E-49		0.114735	[0.099-0.13] unit decrease	Affymetrix [17914406] (imputed)	N
1557	chr5	127487602	127487603	rs2568928	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	5q23.3		rs2568928-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1557	chr5	127487602	127487603	rs2568928	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	5q23.3		rs2568928-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1557	chr5	127491564	127491565	rs790156	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	5q23.3		rs790156-A	0.290194	4E-15		0.0174323	[0.013-0.022] unit decrease	Illumina [13479295] (imputed)	N
1557	chr5	127508074	127508074	rs11439479	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	5q23.3	NR	rs11439479-I	0.760303	3E-11		0.015955	[0.011-0.021] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
1557	chr5	127521756	127521757	rs185689480	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	5q23.3		rs185689480-?	NR	2E-12				NR [~ 8900000] (imputed)	N
1557	chr5	127522542	127522543	rs10089	21139019	Walsh KM	2010-12-07	Endocr Relat Cancer	A pilot genome-wide association study shows genomic variants enriched in the non-tumor cells of patients with well-differentiated neuroendocrine tumors of the ileum.	Ileal carcinoids	239 European ancestry cases, 107 European ancestry controls	NA	5q23.3	SLC12A2	rs10089-?	NR	2E-6		2.56	[1.79-3.70]	Illumina [308330]	N
1557	chr5	127524017	127524018	rs3101725	30998689	Shadrina AS	2019-04-18	PLoS Genet	Varicose veins of lower extremities: Insights from the first large-scale genetic study.	Varicose veins	10,861 British ancestry cases, 397,594 British ancestry controls	NA	5q23.3		rs3101725-C	0.759157	1E-19		0.0037169	[0.0029-0.0045] unit decrease	Affymetrix [10829469] (imputed)	N
1557	chr5	127524017	127524018	rs3101725	30566020	Fukaya E	2018-12-01	Circulation	Clinical and Genetic Determinants of Varicose Veins.	Varicose veins	9,577 British ancestry cases, 327,959 British ancestry controls	NA	5q23.3	NR	rs3101725-C	0.76	9E-18		0.143	[0.11-0.18] unit decrease	Affymetrix [10972371] (imputed)	N
1558	chr5	127538115	127538116	rs251391	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	5q23.3	NR	rs251391-T	0.7453	5E-9		0.001483	[0.00097-0.002] unit increase	Affymetrix [NR] (imputed)	N
1558	chr5	127543279	127543280	rs251216	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q23.3	NR	rs251216-A	0.246735	7E-527				Affymetrix, Illumina [22063850] (imputed)	N
1558	chr5	127543621	127543622	rs251215	32184442	Olafsdottir T	2020-03-17	Commun Biol	Genome-wide association identifies seven loci for pelvic organ prolapse in Iceland and the UK Biobank.	Pelvic organ prolapse	15,010 European ancestry cases, 340,734 European ancestry controls	NA	5q23.3	SLC12A2	rs251215-A	0.5311	1E-6		1.06276	[1.04-1.09]	Affymetrix, Illumina [37144863] (imputed)	N
1558	chr5	127545504	127545505	rs55902659	31220337	Carr DF	2019-06-20	Clin Pharmacol Ther	Genome-wide association study of statin-induced myopathy in patients recruited using the UK clinical practice research datalink.	Statin-induced myopathy	128 European ancestry cases, 2,501 controls	NA	5q23.3	SLC12A2	rs55902659-?	NR	5E-6		2.2727273	[1.52-3.23]	Illumina [654642] (imputed)	N
1558	chr5	127549186	127549187	rs36695	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Uterine prolapse	10,647 European ancestry cases, 224,175 European ancestry controls, 423 East Asian ancestry cases, 82,338 East Asian ancestry controls	NA	5q23.3		rs36695-A	NR	3E-8		0.082	[0.053-0.111] unit increase	Affymetrix, Illumina [25752093] (imputed)	N
1558	chr5	127549612	127549613	rs36697	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	5q23.3	NR	rs36697-A	0.256375	1E-478		0.100288	[0.096-0.104] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
1558	chr5	127551260	127551261	rs36699	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	5q23.3	SLC12A2	rs36699-G	NR	4E-8		0.016755	[0.011-0.023] unit increase	Affymetrix [323123] (imputed)	N
1558	chr5	127552589	127552590	rs2546147	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	5q23.3	NR	rs2546147-A	NR	4E-9		0.0167	[0.011-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
1558	chr5	127552589	127552590	rs2546147	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	5q23.3	NR	rs2546147-A	NR	7E-10		0.0174	[0.012-0.023] unit increase	Affymetrix [9000000] (imputed)	N
1558	chr5	127554217	127554218	rs36704	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	5q23.3	SLC12A2, FBN2	rs36704-?	NR	3E-10		0.021600263	[0.015-0.028] unit decrease	Illumina [27896057] (imputed)	N
1558	chr5	127558257	127558258	rs36708	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	5q23.3		rs36708-A	0.248702	5E-8		0.0171094	[0.011-0.023] unit decrease	Illumina [13479924] (imputed)	N
1558	chr5	127560658	127560659	rs42916	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	5q23.3	FBN2	rs42916-C	0.256968	1E-27		0.023594	[0.019-0.028] unit decrease	NR [13737936] (imputed)	N
1558	chr5	127560658	127560659	rs42916	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	5q23.3		rs42916-?	NR	3E-20		0.0219277	[0.017-0.027] unit decrease	Affymetrix [20259828] (imputed)	N
1558	chr5	127562879	127562880	rs36715	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	5q23.3	NR	rs36715-A	0.7576	4E-6	(EA)	0.0339	[0.019-0.048] unit decrease	Illumina [~ 11800000] (imputed)	N
1558	chr5	127606402	127606403	rs255694	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	5q23.3	NR	rs255694-C	0.153647	4E-14		0.0702938	[0.052-0.089] unit increase	Affymetrix [17914406] (imputed)	N
1558	chr5	127618641	127618642	rs76835745	32771030	Tangtanatakul P	2020-08-08	Arthritis Res Ther	Meta-analysis of genome-wide association study identifies FBN2 as a novel locus associated with systemic lupus erythematosus in Thai population.	Systemic lupus erythematosus	487 Thai cases, 1,606 Thai controls	405 Thai cases, 1,590 Thai controls	5q23.3	FBN2	rs76835745-A	0.1	5E-6		1.5347	[NR]	Illumina [421909] (imputed)	N
1558	chr5	127640782	127640783	rs27713	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	5q23.3	NR	rs27713-G	0.247	4E-6	(IFNgamma_ABC_of_monocytes)			Illumina [5084123] (imputed)	N
1558	chr5	127640860	127640861	rs27855	21998595	N'Diaye A	2011-10-06	PLoS Genet	Identification, replication, and fine-mapping of Loci associated with adult height in individuals of african ancestry.	Height	20,427 African ancestry individuals	Up to 16,436 African American individuals	5q23.3	FBN2	rs27855-A	0.81	4E-6		0.047	[0.027-0.067] unit decrease	Affymetrix, Illumina [3310998] (imputed)	N
1558	chr5	127649975	127649976	rs78099523	34387878	Kim KY	2021-08-13	Hepatology	Genome-wide association of individual vulnerability with alcoholic liver disease: A Korean Genome and Epidemiology Study.	Alcohol-associated liver disease in non drinkers	782 Korean ancestry cases, 18,058 Korean ancestry controls	NA	5q23.3		rs78099523-?	NR	9E-6		1.862	[1.416-2.449]	Affymetrix [7975321] (imputed)	N
1558	chr5	127653021	127653022	rs10057405	22832960	Service SK	2012-05-15	Transl Psychiatry	A genome-wide meta-analysis of association studies of Cloninger's Temperament Scales.	Temperament	Up to 12,433 European ancestry individuals	NA	5q23.3	FBN2	rs10057405-A	0.891	9E-6	(Persistence)	0.11	unit decrease	Affymetrix, Illumina [1252222] (imputed)	N
1558	chr5	127655130	127655130	rs111766756	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	5q23.3		rs111766756-AT	NR	3E-8		0.013	[0.0085-0.0175] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1559	chr5	127668684	127668685	rs78727187	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	5q23.3		rs78727187-T	NR	1E-24		0.1099	[0.089-0.131] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1559	chr5	127668684	127668685	rs78727187	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Height	458,235 European ancestry individuals	NA	5q23.3		rs78727187-?	NR	1E-49		0.138637	[0.12-0.16] unit increase	NR [9800000] (imputed)	N
1559	chr5	127668684	127668685	rs78727187	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	5q23.3	NR	rs78727187-?	NR	6E-17				Affymetrix [~ 8270000] (imputed)	N
1559	chr5	127676364	127676365	rs10057855	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	5q23.3	FBN2	rs10057855-G	0.89371	6E-10		0.0189858	[0.013-0.025] unit increase	NR [13737936] (imputed)	N
1559	chr5	127678460	127678461	rs145085279	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	5q23.3		rs145085279-?	NR	4E-16				NR [~ 8900000] (imputed)	N
1559	chr5	127685134	127685135	rs154001	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals	5q23.3		rs154001-C	0.32164	4E-8		0.057012	[0.038-0.076] increase	Affymetrix [11014269] (imputed)	N
1559	chr5	127685134	127685135	rs154001	32528159	Choquet H	2020-06-11	Commun Biol	A multiethnic genome-wide analysis of 44,039 individuals identifies 41 new loci associated with central corneal thickness.	Central corneal thickness	32,292 European ancestry individuals, 9,623 East Asian ancestry individuals, 1,367 Hispanic/Latino individuals, 757 African American  individuals	NA	5q23.3	FBN2	rs154001-?	NA	9E-9		1.54	[1.01-2.07] unit increase	Affymetrix [5541230] (imputed)	N
1559	chr5	127685134	127685135	rs154001	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	5q23.3	FBN2	rs154001-?	NR	5E-13		0.03342054	[0.024-0.042] unit increase	Illumina [27896057] (imputed)	N
1559	chr5	127685134	127685135	rs154001	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5q23.3		rs154001-?	NR	2E-22				NR [~ 8900000] (imputed)	N
1559	chr5	127685134	127685135	rs154001	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	5q23.3	FBN2	rs154001-C	0.3222	3E-8		0.0848	[0.055-0.114] unit increase	Affymetrix [~ 11900000] (imputed)	N
1559	chr5	127699362	127699363	rs72785129	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	5q23.3	NR	rs72785129-?	NR	6E-9				Affymetrix [~ 8270000] (imputed)	N
1559	chr5	127699374	127699375	rs374748	19553259	Cotsapas C	2009-06-24	Hum Mol Genet	Common body mass index-associated variants confer risk of extreme obesity.	Obesity (extreme)	775 European ancestry cases, 3,197 European ancestry controls	NA	5q23.3	FBN2	rs374748-G	0.11	4E-6		1.47	[1.25-1.73]	Illumina [457251]	N
1559	chr5	127716566	127716567	rs17608902	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine with aura	5,118 European ancestry cases, 74,239 European ancestry controls	NA	5q23.3	intergenic	rs17608902-A	0.09	9E-6		1.19	[1.10-1.28]	Affymetrix, Illumina [~ 2300000] (imputed)	N
1559	chr5	127716566	127716567	rs17608902	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine - clinic-based	5,175 European ancestry clinic-based cases, 13,972 European ancestry clinic-based controls	NA	5q23.3	intergenic	rs17608902-A	0.09	1E-7		1.25	[1.15-1.35]	Affymetrix, Illumina [~ 2300000] (imputed)	N
1559	chr5	127733960	127733961	rs74989671	32771030	Tangtanatakul P	2020-08-08	Arthritis Res Ther	Meta-analysis of genome-wide association study identifies FBN2 as a novel locus associated with systemic lupus erythematosus in Thai population.	Systemic lupus erythematosus	487 Thai cases, 1,606 Thai controls	405 Thai cases, 1,590 Thai controls	5q23.3	FBN2	rs74989671-G	0.16	2E-8		1.5447	[NR]	Illumina [421909] (imputed)	N
1559	chr5	127736780	127736781	rs141773782	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	5q23.3	FBN2	rs141773782-G	NR	7E-10		0.0626591	[0.043-0.083] unit increase	Affymetrix [323123] (imputed)	N
1559	chr5	127770804	127770805	rs331079	25130324	Cai DC	2014-08-29	Genes Brain Behav	A genome-wide search for quantitative trait loci affecting the cortical surface area and thickness of Heschl's gyrus.	Heschl's gyrus morphology	1,778 European ancestry individuals, 1,276 individuals	NA	5q23.3	FBN2	rs331079-C	0.09	5E-6	(Left HG thickness)	0.0658	unit increase	Affymetrix, Illumina [4103035] (imputed)	N
1559	chr5	127772079	127772080	rs813308	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota relative abundance (bacterial taxa)	up to 858 Metropolitan French ancestry individuals	NA	5q23.3	NR	rs813308-?	NR	6E-9	(Ruminococcus_flavefaciens)	0.499338	[0.34-0.66] unit decrease	Illumina [5293637] (imputed)	N
1559	chr5	127776038	127776039	rs148278863	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	5q23.3	FBN2	rs148278863-C	NR	2E-8		0.0431219	[0.028-0.058] unit increase	Affymetrix [323123] (imputed)	N
1559	chr5	127787609	127787610	rs4836373	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	5q23.3		rs4836373-?	NR	7E-23				NR [~ 8900000] (imputed)	N
1559	chr5	127787609	127787610	rs4836373	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	5q23.3		rs4836373-?	NR	4E-29		0.0225787	[0.018-0.027] unit increase	Affymetrix [20259828] (imputed)	N
1560	chr5	127802450	127802451	rs116302901	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	5q23.3	FBN2	rs116302901-A	NR	6E-12		0.0936927	[0.067-0.12] unit increase	Affymetrix [321114] (imputed)	N
1560	chr5	127802450	127802451	rs116302901	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	5q23.3	FBN2	rs116302901-A	NR	1E-12		0.096138	[0.07-0.123] unit increase	Affymetrix [323123] (imputed)	N
1560	chr5	127802654	127802655	rs115375165	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	5q23.3	FBN2, SLC27A6	rs115375165-A	NR	3E-6	(wake after sleep onset, weekdays)	0.1744	[0.1-0.25] unit increase	Affymetrix [7141204] (imputed)	N
1560	chr5	127815452	127815453	rs4385259	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	5q23.3		rs4385259-C	NR	2E-13		0.0146	[0.011-0.019] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
1560	chr5	127824584	127824585	rs7705439	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	5q23.3	NR	rs7705439-A	0.7881	1E-8	(East Asian)	0.4497	[0.29-0.61] unit decrease	Illumina [6200000] (imputed)	N
1560	chr5	127827255	127827256	rs149281955	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	5q23.3		rs149281955-?	NR	3E-13				NR [~ 8900000] (imputed)	N
1560	chr5	127835858	127835859	rs892864	27629089	Sailer A	2016-09-14	Neurology	A genome-wide association study in multiple system atrophy.	Multiple system atrophy	918 European ancestry cases, 3,864 European ancestry controls	NA	5q23.3	FBN2	rs892864-T	0.06	6E-6		1.62		Illumina [4903804] (imputed)	N
1560	chr5	127842418	127842419	rs1435514	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	5q23.3		rs1435514-T	NR	2E-14		0.015	[0.011-0.019] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1560	chr5	127845029	127845030	rs6892983	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls, 20,367 East Asian ancestry cases, 158,359 East Asian ancestry controls	NA	5q23.3		rs6892983-A	NR	1E-10		0.0545	[0.038-0.071] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1560	chr5	127846044	127846045	rs6898449	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls, 49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	5q23.3		rs6898449-G	NR	1E-15		0.0489	[0.037-0.061] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1560	chr5	127855152	127855157	rs140146961	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	5q23.3		rs140146961-G	NR	3E-10		0.0124	[0.0085-0.0163] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
1560	chr5	127857492	127857493	rs17677603	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	5q23.3		rs17677603-G	NR	2E-14		0.0395	[0.029-0.05] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1560	chr5	127857492	127857493	rs17677603	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls	NA	5q23.3	FBN2	rs17677603-G	0.390229	2E-11		0.057320334	[0.041-0.074] unit increase	Affymetrix [7288503] (imputed)	N
1560	chr5	127857492	127857493	rs17677603	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	5q23.3		rs17677603-?	NR	2E-24				NR [~ 8900000] (imputed)	N
1560	chr5	127857492	127857493	rs17677603	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	5q23.3		rs17677603-?	NR	9E-12				NR [~ 8900000] (imputed)	N
1560	chr5	127860886	127860887	rs6595836	32771030	Tangtanatakul P	2020-08-08	Arthritis Res Ther	Meta-analysis of genome-wide association study identifies FBN2 as a novel locus associated with systemic lupus erythematosus in Thai population.	Systemic lupus erythematosus	487 Thai cases, 1,606 Thai controls	405 Thai cases, 1,590 Thai controls	5q23.3	FBN2	rs6595836-A	0.18	1E-6		1.4294	[NR]	Illumina [421909] (imputed)	N
1560	chr5	127861611	127861612	rs1897999	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls, 22,356 East Asian ancestry cases, 156,370 East Asian ancestry controls	NA	5q23.3		rs1897999-T	NR	8E-15		0.0633	[0.047-0.079] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1560	chr5	127863097	127863098	rs10066170	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls	NA	5q23.3	FBN2	rs10066170-G	0.392928	7E-15		0.063519455	[0.048-0.079] unit increase	Affymetrix [7288503] (imputed)	N
1560	chr5	127868198	127868199	rs6595838	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	5q23.3	FBN2	rs6595838-A	0.3522	9E-22		0.3426	[0.27-0.41] mmHg increase	Affymetrix [NR] (imputed)	N
1560	chr5	127868198	127868199	rs6595838	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	5q23.3	FBN2	rs6595838-A	0.351	9E-15		0.2073	[0.15-0.26] mmHg increase	Affymetrix [NR] (imputed)	N
1560	chr5	127868198	127868199	rs6595838	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Systolic blood pressure	140,882 European ancestry individuals	190,318 European ancestry individuals	5q23.3	FBN2	rs6595838-A	0.3	8E-12		0.344	[0.25-0.44] unit increase	Affymetrix [~ 9800000] (imputed)	N
1560	chr5	127868198	127868199	rs6595838	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	5q23.3	FBN2	rs6595838-G		2E-10		0.267	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1560	chr5	127868198	127868199	rs6595838	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	5q23.3	FBN2	rs6595838-G		1E-6		0.136	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1560	chr5	127868198	127868199	rs6595838	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	5q23.3	FBN2	rs6595838-G		2E-7		0.133	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1560	chr5	127870189	127870190	rs4835948	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	5q23.3		rs4835948-C	NR	8E-10		0.0124	[0.0085-0.0163] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1560	chr5	127870189	127870190	rs4835948	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	5q23.3	NR	rs4835948-T	0.532868	3E-9		0.0074577	[0.0049-0.01] unit increase	Affymetrix [16578495] (imputed)	N
1560	chr5	127870641	127870642	rs13184921	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	5q23.3	NR	rs13184921-T	0.753156	8E-16		0.0254693	[0.019-0.032] unit increase	Affymetrix [16580851] (imputed)	N
1560	chr5	127871749	127871750	rs6860901	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	5q23.3	FBN2	rs6860901-?		9E-11				Affymetrix, Illumina [NR] (imputed)	N
1560	chr5	127875735	127875736	rs186263310	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	5q23.3	NR	rs186263310-?	NR	5E-6				Affymetrix [5486770] (imputed)	N
1560	chr5	127875751	127875752	rs374824710	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 27)	19,670 European ancestry individuals	NA	5q23.3		rs374824710-?	NR	5E-10				NR [9705931] (imputed)	N
1560	chr5	127875751	127875752	rs374824710	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	5q23.3	FBN2, SLC27A6	rs374824710-?		3E-9				NR [7428630] (imputed)	N
1560	chr5	127876228	127876229	rs35079125	30690781	Pei YF	2019-02-28	J Bone Miner Res	Joint Association Analysis Identified 18 New Loci for Bone Mineral Density.	Total body bone mineral density (MTAG)	at least 66,628 individuals	NA	5q23.3	NR	rs35079125-G	0.74	3E-10		0.03	[0.02-0.04] unit increase	NR [9704453]	N
1560	chr5	127876228	127876229	rs35079125	30690781	Pei YF	2019-02-28	J Bone Miner Res	Joint Association Analysis Identified 18 New Loci for Bone Mineral Density.	Heel bone mineral density (MTAG)	at least 142,487 individuals	NA	5q23.3	NR	rs35079125-G	0.74	2E-8		0.02	[0.012-0.028] unit increase	NR [9704453]	N
1560	chr5	127877728	127877729	rs73350117	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	5q23.3	NR	rs73350117-A	0.827577	5E-10		0.0202695	[0.014-0.027] unit increase	Affymetrix [16585745] (imputed)	N
1560	chr5	127881565	127881566	rs6595839	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls	NA	5q23.3	FBN2	rs6595839-T	0.313861	1E-11		0.059347495	[0.042-0.076] unit increase	Affymetrix [7288503] (imputed)	N
1560	chr5	127890719	127890720	rs7446359	25475840	Colodro-Conde L	2014-12-05	Twin Res Hum Genet	A twin study of breastfeeding with a preliminary genome-wide association scan.	Breastfeeding duration	1,521 mothers from 1,073 families	NA	5q23.3	FBN2	rs7446359-?	NR	4E-6		1.185	[0.68-1.69] unit decrease	Illumina [6590000] (imputed)	N
1560	chr5	127915542	127915543	rs4345355	32004448	Savage SA	2020-01-30	Am J Hum Genet	Genome-wide Association Study Identifies HLA-DPB1 as a Significant Risk Factor for Severe Aplastic Anemia.	Severe aplastic anemia	359 European ancestry cases, 1,396 European ancestry controls	175 European ancestry cases, 1,059 European ancestry controls	5q23.3	FBN2	rs4345355-?	NR	5E-6		1.54	[NR]	Illumina [688067]	N
1560	chr5	127915990	127915991	rs79268243	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	5q23.3		rs79268243-G	0.08	3E-12		6.97	z score increase	Affymetrix [9061022] (imputed)	N
1560	chr5	127920074	127920075	rs80222069	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	5q23.3	FBN2	rs80222069-C	0.88662	2E-19		0.0263882	[0.021-0.032] unit increase	NR [13737936] (imputed)	N
1561	chr5	127930264	127930265	rs4546434	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	5q23.3		rs4546434-G	0.13	6E-15		7.81	z score increase	Affymetrix [9061022] (imputed)	N
1561	chr5	127933458	127933459	rs58827916	32141793	Garman L	2020-03-06	Ocul Immunol Inflamm	Genome-Wide Association Study of Ocular Sarcoidosis Confirms HLA Associations and Implicates Barrier Function and Autoimmunity in African Americans.	Ocular sarcoidosis	260 African American cases, 1,551 African American controls	NA	5q23.3	NR	rs58827916-C	NR	5E-6		4.029	[2.22-7.31]	Illumina [13976150] (imputed)	N
1561	chr5	127941281	127941282	rs564789596	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	5q23.3		rs564789596-?	NR	3E-15		0.0261111	[0.02-0.033] unit increase	Affymetrix [20259828] (imputed)	N
1561	chr5	127954893	127954894	rs147450666	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	5q23.3		rs147450666-?	NR	2E-13				NR [~ 8900000] (imputed)	N
1561	chr5	127956307	127956308	rs6864885	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	5q23.3	NR	rs6864885-G	0.1327	9E-14				NR [9056863] (imputed)	N
1561	chr5	127972132	127972132	rs772974873	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	5q23.3	NR	rs772974873-GAAG	0.120117	6E-9		0.0645188	[0.042-0.087] unit decrease	Affymetrix [17914406] (imputed)	N
1561	chr5	128011687	128011688	rs4836390	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	5q23.3	intergenic	rs4836390-T	0.85	6E-6		0.04	[0.022-0.058] unit decrease	Affymetrix [7947838] (imputed)	N
1561	chr5	128016162	128016163	rs11743404	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	5q23.3	CTC-573M9.1	rs11743404-C	0.360119	3E-13		0.045967348	[0.034-0.058] unit decrease	Affymetrix [7288503] (imputed)	N
1561	chr5	128018412	128018413	rs17615906	34450027	Boer CG	2021-08-24	Cell	Deciphering osteoarthritis genetics across 826,690 individuals from 9 populations.	Osteoarthritis of the hip or knee	88,842 European ancestry cases, 397,208 European ancestry controls, 899 Japanese ancestry cases, 3,396 Japanese ancestry controls	NA	5q23.3		rs17615906-T	0.8387	4E-11		0.9471479	[0.932047309-0.962493183]	Affymetrix, Illumina [NR] (imputed)	N
1561	chr5	128051434	128051435	rs247172	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	5q23.3		rs247172-?	NR	4E-9				Affymetrix [NR] (imputed)	N
1562	chr5	128081015	128081016	rs141342719	27515689	Kerns SL	2016-07-20	EBioMedicine	Meta-analysis of Genome Wide Association Studies Identifies Genetic Markers of Late Toxicity Following Radiotherapy for Prostate Cancer.	Toxicity response to radiotherapy in prostate cancer (decreased urine stream) (time to event)	1,245 European ancestry individuals	NA	5q23.3	intergenic	rs141342719-T	0.12	4E-6		3.5	[2.05-5.95]	NR [~ 38000000] (imputed)	N
1562	chr5	128107906	128107907	rs13182341	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 6)	4,680 European ancestry individuals	3,566 European ancestry individuals	5q23.3		rs13182341-C	0.328128365	4E-15				Illumina [7417619] (imputed)	N
1562	chr5	128120451	128120452	rs6876348	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	5q23.3	NR	rs6876348-?	NR	2E-7				Illumina [at least 7383741] (imputed)	N
1562	chr5	128132741	128132742	rs7735162	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	5q23.3	SLC27A6	rs7735162-T	0.7244	3E-13		0.0155	[0.011-0.02] unit increase	Affymetrix [18391927] (imputed)	N
1562	chr5	128149136	128149137	rs10075560	34274964	Duijvenboden S	2021-07-19	Hum Mol Genet	Genomic and pleiotropic analyses of resting QT interval identifies novel loci and overlap with atrial electrical disorders.	QT interval	52,107 European ancestry individuals	48,997 individuals	5q23.3		rs10075560-A	0.5836	1E-8		0.42	[0.28-0.56] unit increase	Affymetrix [9800000]	N
1563	chr5	128190362	128190363	rs2012809	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	5q23.3	SLC27A6	rs2012809-G	0.79	5E-10		1.06	[1.04-1.08]	Illumina [34740186] (imputed)	N
1563	chr5	128190362	128190363	rs2012809	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	5q23.3	FBN2, SLC27A6	rs2012809-G	0.82	2E-7		1.05	[1.03-1.07]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1563	chr5	128209452	128209453	rs77884860	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	5q23.3		rs77884860-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1563	chr5	128228601	128228602	rs9327498	33768542	Liu Y	2021-03-26	Clin Pharmacol Ther	Class II HLA Variants Associate with Risk of Pegaspargase Hypersensitivity.	Asparaginase hypersensitivity in acute lymphoblastic leukemia	310 African ancestry individuals	NA	5q23.3	HLA-DQB1	rs9327498-A	NR	3E-6		4.0	[NR]	Illumina [NR] (imputed)	N
1563	chr5	128288396	128288397	rs10037758	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	5q23.3	NR	rs10037758-?	NR	1E-7				Illumina [at least 7383741] (imputed)	N
1563	chr5	128299278	128299279	rs2577531	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	5q23.3	SLC27A6	rs2577531-C	0.59	4E-9		0.38	[0.26-0.5] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1563	chr5	128299278	128299279	rs2577531	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	5q23.3	SLC27A6	rs2577531-C	0.5871	1E-7		0.3559	[0.22-0.49] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1564	chr5	128326844	128326845	rs146300195	33201861	Lahm H	2020-11-17	J Clin Invest	Congenital heart disease risk loci identified by genome-wide association study in European patients.	Congenital right-sided heart lesions	1,296 European ancestry cases, 8,486 European ancestry controls	NA	5q23.3	SLC27A6	rs146300195-?		1E-8		3.6	[2.32-5.53]	Affymetrix, Illumina [9216527] (imputed)	N
1564	chr5	128420076	128420077	rs115509870	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-to-hip ratio adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,049 whole genome sequenced individuals, 29,518 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,001 Mylopotamos (founder/genetic isolate) individuals, 867 Pomak (founder/genetic isolate) individuals	206,045 European ancestry individuals	5q23.3	ISOC1	rs115509870-T	0.9985	7E-6		0.993	[0.56-1.42] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1564	chr5	128428721	128428722	rs3756744	32308125	Wolking S	2020-04-20	Pharmacogenomics	Pharmacoresponse in genetic generalized epilepsy: a genome-wide association study.	Response to levetiracetam in genetic generalized epilepsy	82 European ancestry responders, 127 European ancestry non-responders	NA	5q23.3	intergenic	rs3756744-?	NR	4E-6				Affymetrix, Illumina [at least 3287443] (imputed)	N
1564	chr5	128450449	128450450	rs532617832	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	5q23.3	ISOC1	rs532617832-T	0.9978	2E-6		1.0385	[0.61-1.47] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1564	chr5	128450449	128450450	rs532617832	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference	1,254 whole genome sequenced European ancestry individuals, 3,074 whole genome sequenced individuals, 29,716 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 701 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,050 Mylopotamos (founder/genetic isolate) individuals, 883 Pomak (founder/genetic isolate) individuals	205,909 European ancestry individuals	5q23.3	ISOC1	rs532617832-T	0.9978	4E-6		1.0136	[0.58-1.44] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1565	chr5	128523884	128523885	rs35757618	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	5q23.3	NR	rs35757618-?	NR	2E-6	(AA)	1.1564	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1565	chr5	128523884	128523885	rs35757618	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	5q23.3	NR	rs35757618-?	NR	3E-7	(AA)	1.1154	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1565	chr5	128541596	128541597	rs35100037	28957384	Kim SK	2017-09-28	PLoS One	Two genetic loci associated with ankle injury.	Ankle injury	1,421 European ancestry cases, 154 Hispanic/Latino cases, 121 East Asian ancestry cases, 81,843 European ancestry controls, 8,406 Hispanic/Latino controls, 7,397 East Asian ancestry controls	NA	5q23.3	NR	rs35100037-T	NR	7E-7		1.3279		Affymetrix [8183964] (imputed)	N
1565	chr5	128579823	128579824	rs2431703	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	5q23.3	NR	rs2431703-?	NR	3E-6	(AA)	23.46	[21.03-25.89]	Illumina [905956]	N
1566	chr5	128639191	128639192	rs573893600	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	5q23.3	MIR4460	rs573893600-A	0.9985	6E-6		0.6903	[0.39-0.99] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1566	chr5	128698442	128698443	rs115630272	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	5q23.3	ISOC1, MIR4460	rs115630272-T	0.9566	3E-11		0.2191	[0.15-0.29] unit increase	Affymetrix [~ 11900000] (imputed)	N
1566	chr5	128703122	128703122	rs546150834	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs546150834-T	0.956187	8E-11		0.133876	[0.09-0.178] increase	Affymetrix [11014269] (imputed)	N
1566	chr5	128704007	128704008	rs11952939	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	5q23.3	ISOC1, MIR4460	rs11952939-G	0.9583	7E-10		0.2079	[0.14-0.28] unit increase	Affymetrix [~ 11900000] (imputed)	N
1567	chr5	128722695	128722696	rs10077875	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	5q23.3	ADAMTS19	rs10077875-G	0.448	9E-6	(Energy intake )	0.03	[NR] kcal/d increase	Illumina [899892]	N
1567	chr5	128734007	128734008	rs12187568	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	8,072 individuals	NA	5q23.3		rs12187568-G	0.05	3E-13				NR [13131314] (imputed)	N
1567	chr5	128734007	128734008	rs12187568	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	5q23.3		rs12187568-G	0.05	3E-248		33.65	z score increase	Affymetrix [9061022] (imputed)	N
1567	chr5	128734007	128734008	rs12187568	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	8,072 individuals	NA	5q23.3		rs12187568-G	0.05	4E-12				NR [13131314] (imputed)	N
1567	chr5	128734007	128734008	rs12187568	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	5q23.3		rs12187568-G	0.05	4E-127		23.99	z score increase	Affymetrix [9061022] (imputed)	N
1567	chr5	128734007	128734008	rs12187568	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	8,072 individuals	NA	5q23.3		rs12187568-G	0.05	7E-14				NR [13131314] (imputed)	N
1567	chr5	128734007	128734008	rs12187568	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	5q23.3		rs12187568-G	0.05	2E-133		24.59	z score increase	Affymetrix [9061022] (imputed)	N
1567	chr5	128734007	128734008	rs12187568	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	5q23.3	NR	rs12187568-G	0.0545	1E-17				NR [9056863] (imputed)	N
1567	chr5	128734007	128734008	rs12187568	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	5q23.3	NR	rs12187568-G	0.0545	1E-17				NR [9056863] (imputed)	N
1567	chr5	128734007	128734008	rs12187568	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	5q23.3		rs12187568-?	NR	1E-77				NR [9705931] (imputed)	N
1567	chr5	128734007	128734008	rs12187568	32963231	Hofer E	2020-09-22	Nat Commun	Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.	Cortical volume	22,824 European and African American ancestry individuals	NA	5q23.3	ADAMTS19	rs12187568-?		4E-18	(Pars opercularis)			Affymetrix, Illumina [NR] (imputed)	N
1567	chr5	128738909	128738910	rs115275214	31596875	Traylor M	2019-10-09	PLoS One	Genetic associations with radiological damage in rheumatoid arthritis: Meta-analysis of seven genome-wide association studies of 2,775 cases.	Joint damage in rheumatoid arthritis	2,527 European ancestry individuals, 196 African ancestry individuals, 52 individuals	NA	5q23.3	intergenic	rs115275214-?	NR	4E-6				Affymetrix, Illumina [4802696] (imputed)	N
1567	chr5	128738909	128738910	rs115275214	31596875	Traylor M	2019-10-09	PLoS One	Genetic associations with radiological damage in rheumatoid arthritis: Meta-analysis of seven genome-wide association studies of 2,775 cases.	Joint damage in rheumatoid arthritis	2,527 European ancestry individuals	NA	5q23.3	intergenic	rs115275214-?	NR	4E-6				Affymetrix, Illumina [2723488] (imputed)	N
1567	chr5	128749606	128749607	rs116137603	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q23.3	NR	rs116137603-G	0.0453	1E-8	(SEPT11)	0.01785	NR unit decrease	Illumina [1671387] (imputed)	N
1567	chr5	128766290	128766291	rs11949844	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	5q23.3		rs11949844-?	NR	3E-21				NR [~ 8900000] (imputed)	N
1567	chr5	128767383	128767384	rs17163397	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	5q23.3	ADAMTS19-AS1	rs17163397-A	0.8764	3E-17		0.0307	[0.024-0.038] unit decrease	Affymetrix [19819130] (imputed)	N
1567	chr5	128767383	128767384	rs17163397	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	5q23.3	ADAMTS19-AS1	rs17163397-A	0.8764	2E-10		0.0227	[0.016-0.03] unit decrease	Affymetrix [19819130] (imputed)	N
1567	chr5	128794079	128794080	rs3866223	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	5q23.3		rs3866223-A	0.305479	4E-8		0.0119664	[0.0077-0.0162] unit increase	Illumina [13479295] (imputed)	N
1567	chr5	128801142	128801143	rs13359527	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or major depressive disorder	11,361 European ancestry schizophrenia female cases, 20,206 European ancestry schizophrenia male cases, 11,897 European ancestry bipolar disorder female cases, 8,027 European ancestry bipolar disorder male cases, 10,865 European ancestry major depressive disorder female cases, 5,105 major depressive disorder male cases, 46,410 European ancestry female controls, 46,615 European ancestry male controls, 686 East Asian ancestry schizophrenia female cases, 1,907 East Asian ancestry female controls, 1,150 East Asian ancestry schizophrenia male cases, 1,476 East Asian ancestry male controls	NA	5q23.3	ADAMTS19	rs13359527-A	0.9019	3E-6	(male)	0.1007	[0.058-0.143] unit decrease	NR [NR] (imputed)	N
1567	chr5	128803715	128803716	rs74984349	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or major depressive disorder	11,361 European ancestry schizophrenia female cases, 20,206 European ancestry schizophrenia male cases, 11,897 European ancestry bipolar disorder female cases, 8,027 European ancestry bipolar disorder male cases, 10,865 European ancestry major depressive disorder female cases, 5,105 major depressive disorder male cases, 46,410 European ancestry female controls, 46,615 European ancestry male controls, 686 East Asian ancestry schizophrenia female cases, 1,907 East Asian ancestry female controls, 1,150 East Asian ancestry schizophrenia male cases, 1,476 East Asian ancestry male controls	NA	5q23.3	NR	rs74984349-A	0.9031	9E-6	(male)	0.0996	[0.056-0.144] unit decrease	NR [NR] (imputed)	N
1567	chr5	128805942	128805943	rs73787509	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or recurrent major depressive disorder x sex interaction	31,567 European ancestry schizophrenia cases,19,924 European ancestry bipolar disorder cases, 5,314 European ancestry recurrent major depressive disorder cases, 78,190 European ancestry controls, 1,836 East Asian ancestry schizophrenia cases, 3,383 East Asian ancestry controls	NA	5q23.3	ADAMTS19	rs73787509-A	0.9025	8E-6		0.1366	[0.077-0.197] unit increase	NR [NR] (imputed)	N
1568	chr5	128876339	128876340	rs7719477	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	5q23.3		rs7719477-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1568	chr5	128918218	128918219	rs62399010	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	5q23.3	ADAMTS19, CTC-575N7.1	rs62399010-A	NR	8E-10		0.0304586	[0.021-0.04] unit increase	Affymetrix [321016] (imputed)	N
1568	chr5	128918218	128918219	rs62399010	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	5q23.3	NR	rs62399010-?	NR	8E-13				Affymetrix [~ 8270000] (imputed)	N
1568	chr5	128918455	128918456	rs11749004	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (adjusted for vertical disc diameter)	67,040 British ancestry individuals	NA	5q23.3	ADAMTS19	rs11749004-T	0.25	4E-8		0.00571	[0.0037-0.0077] unit increase	Affymetrix [at least 8002429] (imputed)	N
1568	chr5	128922573	128922574	rs76244727	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	5q23.3	ADAMTS19, KIAA1024L	rs76244727-?		2E-14				NR [7428630] (imputed)	N
1568	chr5	128971796	128971797	rs62399042	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	5q23.3	NR	rs62399042-C	0.9101	4E-11	(Inferior Parietal)	35.13121	[24.72-45.54] unit increase	Affymetrix, Illumina [NR]	N
1569	chr5	129000385	129000386	rs13436218	22445761	Kurose K	2012-03-23	Psychiatry Res	Genome-wide association study of SSRI/SNRI-induced sexual dysfunction in a Japanese cohort with major depression.	Sexual dysfunction (SSRI/SNRI-related)	201 Japanese ancestry individuals	NA		ADAMTS19	rs13436218-C	0.012	1E-6		5.92	[4.67-7.52]	Affymetrix [186320]	N
1569	chr5	129000773	129000774	rs17163154	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	5q23.3	NR	rs17163154-?	NR	5E-69				Affymetrix [NR]	N
1569	chr5	129018313	129018314	rs30641	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	5q23.3	NR	rs30641-A	0.7561	1E-8	(Caudal Middle Frontal)	10.730094	[7.05-14.41] unit decrease	Affymetrix, Illumina [NR]	N
1569	chr5	129054769	129054770	rs32819	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	5q23.3	ADAMTS19, CTC-575N7.1	rs32819-A	NR	3E-10		0.0397975	[0.027-0.052] unit increase	Affymetrix [321016] (imputed)	N
1569	chr5	129059496	129059497	rs246242	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5q23.3		rs246242-?	NR	4E-39				NR [~ 8900000] (imputed)	N
1569	chr5	129060635	129060636	rs152075	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	5q23.3	NR	rs152075-?		1E-12				NR [7428630] (imputed)	N
1569	chr5	129069847	129069848	rs6866701	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	5q23.3	ADAMTS19	rs6866701-A	0.076	8E-18		0.0306	[0.024-0.038] unit increase	Affymetrix [18391927] (imputed)	N
1569	chr5	129074368	129074369	rs10069990	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5q23.3	CHSY-2	rs10069990-?	NR	2E-6	(PC 36:5)	0.32035142	[0.19-0.45] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1569	chr5	129083283	129083284	rs4836470	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	5q23.3	CTC-575N7.1	rs4836470-G	NR	1E-8		0.0338358	[0.022-0.045] unit increase	Affymetrix [321114] (imputed)	N
1569	chr5	129088783	129088784	rs7708378	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	8,620 individuals (<25 years old)	NA	5q23.3		rs7708378-T	NR	5E-6		0.0413	[0.024-0.059] mm increase	Affymetrix, Illumina [8936601] (imputed)	N
1569	chr5	129088783	129088784	rs7708378	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	35,422 individuals (>=25 years old)	NA	5q23.3		rs7708378-T	NR	1E-6		0.0241	[0.015-0.033] mm increase	Affymetrix, Illumina [8936601] (imputed)	N
1569	chr5	129093607	129093608	rs13183333	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs13183333-G	0.378105	1E-10		0.0651124	[0.047-0.084] decrease	Affymetrix [11014269] (imputed)	N
1569	chr5	129095899	129095900	rs6896490	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	5q23.3	CTC-575N7.1, KIAA1024L	rs6896490-A	NR	5E-9		0.0340205	[0.023-0.045] unit increase	Affymetrix [323123] (imputed)	N
1569	chr5	129102549	129102550	rs13164684	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (multi-trait analysis)	90,939 European ancestry individuals	NA	5q23.3	KIAA1024L, CHSY3	rs13164684-A	0.08	8E-10		0.01	NR unit increase	Affymetrix, Illumina [8002429] (imputed)	N
1570	chr5	129187830	129187831	rs450666	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	5q23.3		rs450666-?	NR	8E-10				NR [~ 8900000] (imputed)	N
1571	chr5	129351498	129351499	rs4836487	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DCN	5,353 Icelandic ancestry individuals	NA	5q23.3		rs4836487-G	0.3487	7E-13		0.135025	[0.098-0.172] unit decrease	Illumina [7506463] (imputed)	N
1572	chr5	129411765	129411766	rs17635642	34404248	Tsao YC	2021-08-18	Cephalalgia	Genome-wide association study reveals susceptibility loci for self-reported headache in a large community-based Asian population.	Headache	2,084 Taiwanese ancestry cases, 11,822 Taiwanese ancestry controls	NA	5q23.3		rs17635642-T	0.104	1E-7		0.7232	[0.6408-0.826]	Affymetrix [7842171] (imputed)	N
1572	chr5	129436665	129436666	rs10050470	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q23.3	NR	rs10050470-G	0.544048	9E-10				Affymetrix, Illumina [22063850] (imputed)	N
1573	chr5	129573665	129573666	rs971891	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	5q23.3	Intergenic	rs971891-T	NR	3E-8		0.0209049	[0.013-0.028] unit increase	Illumina [13519193] (imputed)	N
1573	chr5	129573665	129573666	rs971891	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	5q23.3	Intergenic	rs971891-T	NR	4E-10		0.021496	[0.015-0.028] unit increase	Illumina [13520550] (imputed)	N
1573	chr5	129573665	129573666	rs971891	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	5q23.3	Intergenic	rs971891-T	NR	2E-6	(women)	0.0233363	[0.014-0.033] unit increase	Illumina [13520550] (imputed)	N
1573	chr5	129573665	129573666	rs971891	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	5q23.3	Intergenic	rs971891-T	NR	9E-16		0.0321801	[0.024-0.04] unit increase	Illumina [13520550] (imputed)	N
1573	chr5	129628317	129628318	rs112979091	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5q23.3		rs112979091-?	NR	4E-10				NR [~ 8900000] (imputed)	N
1574	chr5	129630224	129630225	rs35447532	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	5q23.3	Intergenic	rs35447532-G	NR	1E-7		0.030862	[0.019-0.042] unit increase	Illumina [13520550] (imputed)	N
1574	chr5	129644525	129644526	rs189282905	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	5q23.3	Intergenic	rs189282905-T	NR	7E-6	(men)	0.0321874	[0.018-0.046] unit decrease	Illumina [13520550] (imputed)	N
1574	chr5	129648020	129648021	rs264124	26015512	Komatsu M	2015-05-26	Clin Cancer Res	Pharmacoethnicity in Paclitaxel-Induced Sensory Peripheral Neuropathy.	Paclitaxel-induced cytotoxicity	57 Japanese ancestry lymphoblastoid cell lines, 59 Han Chinese ancestry lymphoblastoid cell lines	77 European ancestry lymphoblastoid cell lines, 87 Yoruban ancestry lymphoblastoid cell lines, 83 African ancestry lymphoblastoid cell lines	5q23.3	intergenic	rs264124-?	NR	7E-7		0.146	[NR] unit increase	NR [~ 4600000] (imputed)	N
1574	chr5	129657490	129657491	rs35164994	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	5q23.3		rs35164994-A	NR	4E-8		0.0112	[0.0073-0.0151] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1575	chr5	129792133	129792134	rs6894216	22952603	Hart AB	2012-08-28	PLoS One	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 10 individuals	NA	5q23.3	intergenic	rs6894216-?	NR	4E-6	(SF2)			Affymetrix [5476100] (imputed)	N
1575	chr5	129800090	129800091	rs62391342	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	5q23.3		rs62391342-?	NR	1E-12				NR [~ 8900000] (imputed)	N
1575	chr5	129813763	129813764	rs55975060	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	5q23.3	Intergenic	rs55975060-T	NR	1E-8		0.0320833	[0.021-0.043] unit increase	Illumina [13520550] (imputed)	N
1575	chr5	129813763	129813764	rs55975060	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	5q23.3	Intergenic	rs55975060-T	NR	7E-12		0.0233667	[0.017-0.03] unit decrease	Illumina [13520550] (imputed)	N
1575	chr5	129813763	129813764	rs55975060	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	5q23.3	Intergenic	rs55975060-T	NR	2E-6	(women)	0.0230432	[0.014-0.033] unit decrease	Illumina [13520550] (imputed)	N
1575	chr5	129813763	129813764	rs55975060	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	5q23.3	Intergenic	rs55975060-T	NR	1E-18		0.0348956	[0.027-0.043] unit decrease	Illumina [13520550] (imputed)	N
1576	chr5	129917069	129917070	rs113264677	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	5q23.3	Intergenic	rs113264677-C	NR	5E-12		0.0263528	[0.019-0.034] unit increase	Illumina [13519193] (imputed)	N
1576	chr5	129917069	129917070	rs113264677	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	5q23.3	Intergenic	rs113264677-C	NR	6E-7	(women)	0.0246301	[0.015-0.034] unit increase	Illumina [13520550] (imputed)	N
1576	chr5	129917069	129917070	rs113264677	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	5q23.3	Intergenic	rs113264677-C	NR	6E-13		0.0249503	[0.018-0.032] unit increase	Illumina [13520550] (imputed)	N
1576	chr5	129917069	129917070	rs113264677	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	5q23.3	Intergenic	rs113264677-C	NR	2E-7	(men)	0.0251164	[0.016-0.035] unit increase	Illumina [13520550] (imputed)	N
1576	chr5	129917069	129917070	rs113264677	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	5q23.3	Intergenic	rs113264677-C	NR	5E-20		0.0368731	[0.029-0.045] unit increase	Illumina [13520550] (imputed)	N
1576	chr5	129926041	129926042	rs72797733	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	5q23.3	Intergenic	rs72797733-T	NR	7E-9		0.0332344	[0.022-0.044] unit decrease	Illumina [13520550] (imputed)	N
1576	chr5	129943318	129943319	rs7731657	17903298	Meigs JB	2007-09-19	BMC Med Genet	Genome-wide association with diabetes-related traits in the Framingham Heart Study.	Fasting plasma glucose	1,027 individuals	NA	5q23.3	intergenic	rs7731657-?	NR	7E-6	(tFPG)			Affymetrix [70897]	N
1576	chr5	129977279	129977280	rs139304334	30265060	MacKillop J	2018-09-27	Exp Clin Psychopharmacol	Genetic influences on delayed reward discounting: A genome-wide prioritized subset approach.	Delayed reward discounting	986 European ancestry individuals	NA	5q23.3	NR	rs139304334-A	0.058	2E-6		0.460004	[0.27-0.65] unit increase	Illumina [4883968] (imputed)	N
1576	chr5	129998928	129998929	rs115526448	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5q23.3		rs115526448-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1576	chr5	130017286	130017287	rs4836519	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	5q23.3	intergenic	rs4836519-T	0.768	4E-10		1.072	[1.039-1.106]	Affymetrix, Illumina [1230000] (imputed)	N
1577	chr5	130025867	130025868	rs727962	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	5q23.3	NR	rs727962-A	0.244	9E-6	(IFNalpha_ABC_of_monocytes)			Illumina [5084123] (imputed)	N
1577	chr5	130059749	130059750	rs7701967	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	5q23.3	Intergenic	rs7701967-G	NR	3E-10		0.0370345	[0.026-0.049] unit increase	Illumina [13520550] (imputed)	N
1577	chr5	130059749	130059750	rs7701967	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	5q23.3	Intergenic	rs7701967-G	NR	2E-13		0.0287375	[0.021-0.036] unit decrease	Illumina [13519193] (imputed)	N
1577	chr5	130059749	130059750	rs7701967	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	5q23.3	Intergenic	rs7701967-G	NR	2E-8	(men)	0.0278277	[0.018-0.038] unit decrease	Illumina [13520550] (imputed)	N
1577	chr5	130059749	130059750	rs7701967	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	5q23.3	Intergenic	rs7701967-G	NR	1E-7	(women)	0.0266098	[0.017-0.037] unit decrease	Illumina [13520550] (imputed)	N
1577	chr5	130059749	130059750	rs7701967	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	5q23.3	Intergenic	rs7701967-G	NR	1E-14		0.0273162	[0.02-0.034] unit decrease	Illumina [13520550] (imputed)	N
1577	chr5	130059749	130059750	rs7701967	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	5q23.3	Intergenic	rs7701967-G	NR	6E-23		0.0406217	[0.033-0.049] unit decrease	Illumina [13520550] (imputed)	N
1577	chr5	130096259	130096260	rs12518350	24281739	Boardman JD	2013-11-27	Demography	Is the gene-environment interaction paradigm relevant to genome-wide studies? The case of education and body mass index.	Body mass index (education interaction)	816 non-college graduate individuals, 1,061 college graduate individuals	NA	5q23.3	NR	rs12518350-?	NR	6E-6				Affymetrix [260402]	N
1577	chr5	130104075	130104076	rs10051722	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	5q23.3	NR	rs10051722-A	0.7	9E-9	(EA)	1.0635655		Affymetrix, Illumina [~ 9000000] (imputed)	N
1577	chr5	130104075	130104076	rs10051722	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	5q23.3	NR	rs10051722-A	0.7	4E-12	(EA)	1.0947279	[1.07-1.12]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1577	chr5	130121226	130121227	rs4706014	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	5q23.3	NR	rs4706014-C	0.238	1E-6	(IFNalpha_ABC_of_monocytes)			Illumina [5084123] (imputed)	N
1577	chr5	130148616	130148617	rs11948739	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric bone mineral content (hip)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	5q23.3	NR	rs11948739-C	0.312	2E-6	(Females)	0.225627	[0.13-0.32] unit increase	Illumina [~ 6600000] (imputed)	N
1578	chr5	130168416	130168417	rs147519028	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	5q23.3		rs147519028-?	NR	4E-12				NR [~ 8900000] (imputed)	N
1578	chr5	130255429	130255430	rs34119525	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	5q23.3	Intergenic	rs34119525-T	NR	8E-8		0.0274012	[0.017-0.037] unit decrease	Illumina [13519193] (imputed)	N
1578	chr5	130255429	130255430	rs34119525	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	5q23.3	Intergenic	rs34119525-T	NR	7E-7		0.0229095	[0.014-0.032] unit decrease	Illumina [13520550] (imputed)	N
1578	chr5	130255429	130255430	rs34119525	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	5q23.3	Intergenic	rs34119525-T	NR	2E-10		0.0344885	[0.024-0.045] unit decrease	Illumina [13520550] (imputed)	N
1578	chr5	130284842	130284843	rs6595968	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	5q23.3	NR	rs6595968-G	0.224324	2E-8		0.0135862	[0.0089-0.0183] unit decrease	NR [NR]	N
1579	chr5	130308753	130308754	rs17839577	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	5q23.3	NR	rs17839577-T	NR	2E-9		0.0456	[0.031-0.06] unit decrease	Affymetrix [9000000] (imputed)	N
1579	chr5	130308753	130308754	rs17839577	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	5q23.3	NR	rs17839577-T	NR	2E-10		0.048	[0.033-0.063] unit increase	Affymetrix [9000000] (imputed)	N
1579	chr5	130324266	130324267	rs191791704	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-10 levels	7,681 Finnish ancestry individuals	NA	5q23.3	NR	rs191791704-C		6E-6		0.5225	[0.29-0.75] SD units decrease	NR [10700000] (imputed)	N
1579	chr5	130334657	130334658	rs79946623	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Coronary artery disease in dyslipidemia	768 Korean ancestry cases, 19,999 Korean ancestry controls	NA	5q23.3		rs79946623-A	0.1792	2E-6		1.357	[1.197-1.539]	Affymetrix [7975321] (imputed)	N
1579	chr5	130364516	130364517	rs189402769	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	5q23.3		rs189402769-?	NR	2E-20				NR [~ 8900000] (imputed)	N
1579	chr5	130370969	130370970	rs11948761	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	5q23.3	Intergenic	rs11948761-T	NR	6E-8	(men)	0.0273801	[0.017-0.037] unit increase	Illumina [13520550] (imputed)	N
1579	chr5	130378026	130378027	rs1363695	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	5q23.3	NR	rs1363695-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
1579	chr5	130378026	130378027	rs1363695	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	5q23.3		rs1363695-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1579	chr5	130378026	130378027	rs1363695	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	5q23.3	NA	rs1363695-T	0.2359	8E-10		0.0125	[0.0086-0.0164] unit decrease	NR [~ 27400000] (imputed)	N
1579	chr5	130383045	130383046	rs2189759	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Varicose veins	22,037 European ancestry cases, 437,665 European ancestry controls, 474 East Asian ancestry cases, 178,252 East Asian ancestry controls	NA	5q23.3		rs2189759-A	NR	1E-10		0.113	[0.079-0.147] unit increase	Affymetrix, Illumina [25842955] (imputed)	N
1579	chr5	130413980	130413981	rs6867265	23453885	Smoller JW	2013-02-27	Lancet	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NA	5q23.3	NR	rs6867265-A		2E-6	(Modelling analysis)	1.11	[1.06-1.16]	NR [1252901] (imputed)	N
1580	chr5	130428020	130428021	rs182622154	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	5q23.3	NR	rs182622154-T	0.066534	2E-11		0.027887	[0.02-0.036] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
1580	chr5	130441645	130441646	rs144137862	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	5q23.3	Intergenic	rs144137862-G	0.998	2E-6	(AA)	0.255	unit increase	Illumina [NR] (imputed)	N
1580	chr5	130461829	130461830	rs4706006	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	5q23.3	Intergenic	rs4706006-T	NR	7E-14		0.0435537	[0.032-0.055] unit decrease	Illumina [13520550] (imputed)	N
1580	chr5	130461829	130461830	rs4706006	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	5q23.3	Intergenic	rs4706006-T	NR	2E-8	(women)	0.0281027	[0.018-0.038] unit increase	Illumina [13520550] (imputed)	N
1580	chr5	130469086	130469087	rs139746351	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	5q23.3	Intergenic	rs139746351-G	NR	3E-14		0.0293274	[0.022-0.037] unit decrease	Illumina [13519193] (imputed)	N
1580	chr5	130469086	130469087	rs139746351	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	5q23.3	Intergenic	rs139746351-G	NR	6E-26		0.042861	[0.035-0.051] unit decrease	Illumina [13520550] (imputed)	N
1580	chr5	130471708	130471709	rs142644146	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	5q23.3	NR	rs142644146-?	NR	3E-9				Illumina [7760689] (imputed)	N
1580	chr5	130490963	130490964	rs148438889	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-10 levels	7,681 Finnish ancestry individuals	NA	5q23.3	NR	rs148438889-G		6E-6		0.5234	[0.3-0.75] SD units decrease	NR [10700000] (imputed)	N
1580	chr5	130501796	130501796	rs202135714	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5q23.3	HINT1	rs202135714-CT	0.225	2E-16	(Histidine triad nucleotide-binding protein 1, HINT1.5900.11.2)	0.25	[0.19-0.31] unit increase	Affymetrix [10572788] (imputed)	N
1581	chr5	130581194	130581195	rs6875363	34074324	Wan JY	2021-06-01	Diabetol Metab Syndr	Genome-wide association analysis of metabolic syndrome quantitative traits in the GENNID multiethnic family study.	Fasting glucose	281 African American individuals from 73 families, 516 European ancestry individuals from 75 families, 125 Japanese American individuals from 15 families, 598 Mexican American individuals from 96 families	NA	5q31.1	LYRM7, CDC42SE2	rs6875363-T	0.4421	1E-7	(East Asian)	0.54	[0.32-0.76] unit decrease	Illumina [up to 13042663] (imputed)	N
1581	chr5	130604810	130604811	rs7737355	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Life satisfaction	166,205 European ancestry individuals	NA	5q31.1	NR	rs7737355-A	0.789	1E-7		0.0226	[0.014-0.031] unit increase	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
1581	chr5	130613599	130613600	rs11743851	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	5q31.1		rs11743851-C	NR	2E-9		0.0147	[0.01-0.0194] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
1581	chr5	130613599	130613600	rs11743851	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	5q31.1	NR	rs11743851-G	0.3698	2E-23	(EA)	1.1078569	[1.09-1.13]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1581	chr5	130613599	130613600	rs11743851	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	5q31.1	NR	rs11743851-G	0.3698	1E-31	(EA)	1.1548939	[1.13-1.18]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1581	chr5	130627883	130627884	rs13185787	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Subjective well-being	298,420 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	5q31.1	NR	rs13185787-A	0.2563	2E-8		0.01926423	[0.013-0.026] unit decrease	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
1581	chr5	130628102	130628103	rs78623258	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	5q31.1	CDC42SE2	rs78623258-G	0.18981	4E-11		0.019188453	[0.013-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1581	chr5	130632654	130632655	rs1030271	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	5q31.1	CDC42SE2	rs1030271-G	NR	2E-15		0.0450079	[0.034-0.056] unit decrease	Illumina [13520550] (imputed)	N
1581	chr5	130656027	130656028	rs248653	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	5q31.1	CDC42SE2	rs248653-T	0.963341	3E-10		0.0319312	[0.022-0.042] unit increase	Affymetrix [NR] (imputed)	N
1581	chr5	130656027	130656028	rs248653	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	5q31.1	CDC42SE2	rs248653-T	0.96334	2E-8		0.0296024	[0.019-0.04] unit increase	Affymetrix [NR] (imputed)	N
1581	chr5	130666120	130666121	rs6897209	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	5q31.1	NR	rs6897209-?	NR	8E-12				Affymetrix [NR]	N
1581	chr5	130672957	130672958	rs193735	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	5q31.1	CDC42SE2	rs193735-G	0.963334	7E-10		0.0327254	[0.022-0.043] unit decrease	Affymetrix [NR] (imputed)	N
1581	chr5	130674075	130674076	rs4706020	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Perceived unattractiveness to mosquitoes	16,576 European ancestry individuals	NA	5q31.1	CDC42SE2	rs4706020-G	NR	5E-6		0.1094	[0.063-0.156] unit decrease	Illumina [7433384] (imputed)	N
1581	chr5	130674075	130674076	rs4706020	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	5q31.1	CDC42SE2	rs4706020-G	NR	5E-15		0.0296196	[0.022-0.037] unit decrease	Illumina [13519193] (imputed)	N
1581	chr5	130674075	130674076	rs4706020	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	5q31.1	CDC42SE2	rs4706020-G	NR	3E-8	(women)	0.027233	[0.018-0.037] unit decrease	Illumina [13520550] (imputed)	N
1581	chr5	130674075	130674076	rs4706020	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	5q31.1	CDC42SE2	rs4706020-G	NR	2E-8	(men)	0.0269907	[0.018-0.036] unit decrease	Illumina [13520550] (imputed)	N
1581	chr5	130674075	130674076	rs4706020	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	5q31.1	CDC42SE2	rs4706020-G	NR	2E-15		0.0272813	[0.021-0.034] unit decrease	Illumina [13520550] (imputed)	N
1581	chr5	130674075	130674076	rs4706020	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	5q31.1	CDC42SE2	rs4706020-G	NR	1E-27		0.0434323	[0.036-0.051] unit decrease	Illumina [13520550] (imputed)	N
1582	chr5	130687136	130687137	rs382216	25778476	Jun G	2015-03-17	Mol Psychiatry	A novel Alzheimer disease locus located near the gene encoding tau protein.	Alzheimer's disease in APOE e4- carriers	7,184 cases, 26,968 controls	718 European ancestry cases, 1,699 European ancestry controls	5q31.1	CDC42SE2	rs382216-C	0.64	2E-7		1.1494253	[1.09-1.22]	NR [NR]	N
1582	chr5	130730690	130730691	rs960428	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	5q31.1		rs960428-?	NR	9E-10				NR [~ 8900000] (imputed)	N
1582	chr5	130764935	130764936	rs7735563	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	5q31.1	RAPGEF6, CDC42SE2, FNIP1	rs7735563-G	0.008	1E-6		6.67	[2.75-16.17]	Illumina [1556551]	N
1582	chr5	130766661	130766662	rs1291602	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	5q31.1	AC008695.1	rs1291602-T	0.1592	3E-32		0.0304	[0.025-0.035] unit decrease	Affymetrix [18391927] (imputed)	N
1582	chr5	130766661	130766662	rs1291602	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	244,730 European ancestry women	NA	5q31.1	AC008695.1	rs1291602-T	0.159	4E-18		0.03	[0.024-0.036] unit decrease	Affymetrix [18391927] (imputed)	N
1582	chr5	130766661	130766662	rs1291602	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	205,513 European ancestry men	NA	5q31.1	AC008695.1	rs1291602-T	0.159	9E-16		0.03	[0.022-0.038] unit decrease	Affymetrix [18391927] (imputed)	N
1582	chr5	130767794	130767795	rs74666984	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5q31.1		rs74666984-?	NR	4E-12				NR [~ 8900000] (imputed)	N
1582	chr5	130786866	130786867	rs4706022	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	5q31.1	RAPGEF6	rs4706022-T	NR	5E-6		0.0389454	[0.022-0.056] unit decrease	Illumina [13520550] (imputed)	N
1583	chr5	130833945	130833946	rs31251	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	5q31.1	RAPGEF6	rs31251-T	NR	2E-10		0.0223793	[0.015-0.029] unit increase	Illumina [13519193] (imputed)	N
1583	chr5	130833945	130833946	rs31251	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	5q31.1	RAPGEF6	rs31251-T	NR	3E-9		0.018943	[0.013-0.025] unit increase	Illumina [13520550] (imputed)	N
1583	chr5	130845360	130845361	rs147320771	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-10 levels	7,681 Finnish ancestry individuals	NA	5q31.1	NR	rs147320771-C		7E-6		0.5222	[0.29-0.75] SD units increase	NR [10700000] (imputed)	N
1583	chr5	130867732	130867733	rs1029472	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Aspartate aminotransferase levels	386,570 British ancestry individuals, 10,617 Asian or Asian British individuals, 7,426 Black or Black British individuals, 2,321 Chinese ancestry individuals	NA	5q31.1	FNIP1	rs1029472-?	NR	1E-8		0.0028	[0.0016-0.004] unit increase	Affymetrix [21347608] (imputed)	N
1583	chr5	130867732	130867733	rs1029472	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Alanine aminotransferase levels	387,859 British ancestry individuals, 10,635 Asian or Asian British individuals, 7,468 Black or Black British individuals, 2,338 Chinese ancestry individuals	NA	5q31.1	FNIP1	rs1029472-?	NR	2E-12		0.0057	[0.0039-0.0075] unit increase	Affymetrix [21347608] (imputed)	N
1583	chr5	130867732	130867733	rs1029472	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	5q31.1	NR	rs1029472-A	0.9407	2E-9		0.0251	[0.017-0.033] unit decrease	NR [~ 27400000] (imputed)	N
1583	chr5	130870694	130870695	rs139737896	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Perceived unattractiveness to mosquitoes	16,576 European ancestry individuals	NA	5q31.1	RAPGEF6	rs139737896-T	NR	6E-6		0.666564	[0.37-0.96] unit increase	Illumina [7433384] (imputed)	N
1583	chr5	130879002	130879003	rs3776005	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	5q31.1	Intergenic	rs3776005-T	0.204	7E-11	(MTAG)	0.0145	[0.01-0.019] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1583	chr5	130888423	130888424	rs6890695	25778476	Jun G	2015-03-17	Mol Psychiatry	A novel Alzheimer disease locus located near the gene encoding tau protein.	Alzheimer's disease in APOE e4- carriers	7,184 cases, 26,968 controls	718 European ancestry cases, 1,699 European ancestry controls	5q31.1	RAPGEF6	rs6890695-G	0.79	6E-7		1.1494253	[1.09-1.22]	NR [NR]	N
1583	chr5	130892113	130892114	rs1910030	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	5q31.1	NR	rs1910030-?	NR	1E-6		0.0448	[0.027-0.063] unit increase	Illumina [at least 560000] (imputed)	N
1584	chr5	130941740	130941741	rs75953559	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	5q31.1	RAPGEF6	rs75953559-G	NR	5E-16		0.0478169	[0.036-0.059] unit decrease	Illumina [13520550] (imputed)	N
1584	chr5	130951749	130951750	rs3756290	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Subjective well-being	298,420 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	5q31.1	RAPGEF6	rs3756290-A	0.2431	1E-8		0.0177	[0.012-0.024] unit decrease	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
1584	chr5	130952473	130952474	rs141297994	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	5q31.1		rs141297994-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1584	chr5	130955486	130955487	rs11950815	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	5q31.1	RAPGEF6	rs11950815-G	0.63	2E-14				NR [> 9500000] (imputed)	N
1584	chr5	130955486	130955487	rs11950815	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	5q31.1	RAPGEF6	rs11950815-G	0.631263	9E-12		1.044193	[1.0313102468288-1.05723664919642]	NR [9572556] (imputed)	N
1584	chr5	130955486	130955487	rs11950815	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	5q31.1	RAPGEF6	rs11950815-G	NR	1E-9	(men)	0.0292602	[0.02-0.039] unit decrease	Illumina [13520550] (imputed)	N
1584	chr5	131008193	131008194	rs26008	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	Triglyceride levels	up to 237,050 European ancestry individuals, up to 16,935 African ancestry individuals, up to 30,468 South Asian ancestry individuals, up to 8,287 East Asian ancestry individuals, 5,084 Hispanic individuals	up to 286,268 European and unknown ancestry individuals	5q31.1	NR	rs26008-C	NR	6E-11		0.02367203	[0.017-0.031] unit decrease	Illumina [242289]	N
1584	chr5	131008193	131008194	rs26008	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	Triglyceride levels	up to 237,050 European ancestry individuals	NA	5q31.1	NR	rs26008-C	0.93	9E-8		0.032	unit decrease	Illumina [242289]	N
1584	chr5	131008583	131008584	rs115209326	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Cystatin C levels	437,846 European ancestry individuals	NA	5q31.1		rs115209326-?	NR	1E-13		0.129806	[0.096-0.163] unit increase	NR [9800000] (imputed)	N
1584	chr5	131008583	131008584	rs115209326	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	5q31.1	NR	rs115209326-T	NR	1E-9		0.1259	[0.085-0.166] unit decrease	Affymetrix [9000000] (imputed)	N
1584	chr5	131008583	131008584	rs115209326	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	5q31.1	NR	rs115209326-T	NR	8E-11		0.1347	[0.094-0.175] unit increase	Affymetrix [9000000] (imputed)	N
1584	chr5	131008583	131008584	rs115209326	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	5q31.1	NR	rs115209326-T	0.0033729999999999594	3E-13		0.0515888	[0.037-0.066] unit increase	Affymetrix [16582909] (imputed)	N
1584	chr5	131008583	131008584	rs115209326	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	5q31.1	NR	rs115209326-T	0.0033609999999999474	4E-9		0.0601544	[0.039-0.081] unit increase	Affymetrix [16585854] (imputed)	N
1584	chr5	131008583	131008584	rs115209326	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	5q31.1	NR	rs115209326-T	0.0033729999999999594	4E-14		0.0594634	[0.044-0.075] unit increase	Affymetrix [16582965] (imputed)	N
1584	chr5	131008583	131008584	rs115209326	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	5q31.1	NR	rs115209326-T	0.0033609999999999474	5E-10		0.0759155	[0.052-0.1] unit increase	Affymetrix [16585866] (imputed)	N
1584	chr5	131010984	131010985	rs79577858	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5q31.1		rs79577858-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1584	chr5	131017950	131017951	rs115710902	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-10 levels	7,681 Finnish ancestry individuals	NA	5q31.1	NR	rs115710902-C		9E-6		0.5171	[0.29-0.75] SD units increase	NR [10700000] (imputed)	N
1584	chr5	131043659	131043660	rs593767	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	5q31.1	Intergenic	rs593767-T	0.2155	2E-10		0.0151	[0.01-0.02] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1584	chr5	131068094	131068095	rs7702182	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	5q31.1		rs7702182-G	NR	4E-15		0.0134	[0.01-0.017] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1585	chr5	131080959	131080960	rs35403253	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	5q31.1	FNIP1	rs35403253-T	NR	4E-17		0.0314338	[0.024-0.039] unit increase	Illumina [13519193] (imputed)	N
1585	chr5	131080959	131080960	rs35403253	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	5q31.1	FNIP1	rs35403253-T	NR	3E-9	(women)	0.028721	[0.019-0.038] unit increase	Illumina [13520550] (imputed)	N
1585	chr5	131080959	131080960	rs35403253	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	5q31.1	FNIP1	rs35403253-T	NR	1E-9	(men)	0.0288918	[0.02-0.038] unit increase	Illumina [13520550] (imputed)	N
1585	chr5	131080959	131080960	rs35403253	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	5q31.1	FNIP1	rs35403253-T	NR	1E-17		0.0289916	[0.022-0.036] unit increase	Illumina [13520550] (imputed)	N
1585	chr5	131080959	131080960	rs35403253	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	5q31.1	FNIP1	rs35403253-T	NR	1E-30		0.0453925	[0.038-0.053] unit increase	Illumina [13520550] (imputed)	N
1585	chr5	131095676	131095677	rs185120612	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	5q31.1	FNIP1, CTC-432M15.3	rs185120612-A	0.0021	3E-10		0.3287823	[0.23-0.43] unit increase	Affymetrix [~ 2500000] (imputed)	N
1585	chr5	131095676	131095677	rs185120612	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	5q31.1	FNIP1, CTC-432M15.3	rs185120612-A	0.0021	4E-10		0.3266875	[0.22-0.43] unit increase	Affymetrix [~ 2500000] (imputed)	N
1585	chr5	131109544	131109545	rs758324	25778476	Jun G	2015-03-17	Mol Psychiatry	A novel Alzheimer disease locus located near the gene encoding tau protein.	Alzheimer's disease in APOE e4- carriers	7,184 cases, 26,968 controls	718 European ancestry cases, 1,699 European ancestry controls	5q31.1	FNIP1	rs758324-T	0.81	4E-7		1.1627907	[1.1-1.22]	NR [NR]	N
1585	chr5	131120345	131120345	rs370449198	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	5q31.1	FNIP1	rs370449198-A	0.922	4E-8		0.721	[0.6-0.84]	Illumina [11270530] (imputed)	N
1586	chr5	131220009	131220010	rs4425498	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	5q31.1		rs4425498-G	NR	4E-9		0.0214	[0.014-0.028] unit increase	Affymetrix, Illumina [20528270] (imputed)	N
1586	chr5	131231534	131231535	rs7710536	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	5q31.1	Intergenic	rs7710536-T	0.7968	3E-9	(MTAG)	0.0122	[0.0083-0.0161] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1586	chr5	131232958	131232959	rs142958719	25778476	Jun G	2015-03-17	Mol Psychiatry	A novel Alzheimer disease locus located near the gene encoding tau protein.	Alzheimer's disease in APOE e4- carriers	7,184 cases, 26,968 controls	718 European ancestry cases, 1,699 European ancestry controls	5q31.1	FNIP1, ACSL6	rs142958719-G	0.82	3E-7		1.1627907	[1.1-1.23]	NR [NR]	N
1586	chr5	131245711	131245712	rs115393715	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-10 levels	7,681 Finnish ancestry individuals	NA	5q31.1	NR	rs115393715-G		9E-6		0.5166	[0.28-0.75] SD units decrease	NR [10700000] (imputed)	N
1586	chr5	131247789	131247790	rs35149731	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	5q31.1	Intergenic	rs35149731-G	NR	5E-16		0.0297127	[0.023-0.037] unit decrease	Illumina [13519193] (imputed)	N
1586	chr5	131247789	131247790	rs35149731	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	5q31.1	Intergenic	rs35149731-G	NR	7E-17		0.0277401	[0.021-0.034] unit decrease	Illumina [13520550] (imputed)	N
1586	chr5	131247789	131247790	rs35149731	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	5q31.1	Intergenic	rs35149731-G	NR	1E-8	(women)	0.0271366	[0.018-0.036] unit decrease	Illumina [13520550] (imputed)	N
1586	chr5	131281457	131281458	rs664732	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	5q31.1		rs664732-C	NR	4E-8		0.0325	[0.021-0.044] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
1586	chr5	131301614	131301615	rs476428	25778476	Jun G	2015-03-17	Mol Psychiatry	A novel Alzheimer disease locus located near the gene encoding tau protein.	Alzheimer's disease in APOE e4- carriers	7,184 cases, 26,968 controls	718 European ancestry cases, 1,699 European ancestry controls	5q31.1	ACSL6	rs476428-G	0.81	2E-7		1.1627907	[1.1-1.23]	NR [NR]	N
1587	chr5	131341540	131341541	rs7714191	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	5q31.1	NR	rs7714191-C	0.4014	5E-8	(Transverse Temporal)	1.5816824	[1.01-2.15] unit decrease	Affymetrix, Illumina [NR]	N
1587	chr5	131371998	131371999	rs1858074	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Perceived unattractiveness to mosquitoes	16,576 European ancestry individuals	NA	5q31.1	ACSL6, IL3	rs1858074-G	0.317	1E-9		0.148864	[0.1-0.2] unit increase	Illumina [7433384] (imputed)	N
1587	chr5	131375682	131375683	rs569102234	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	5q31.1	IL3	rs569102234-A	0.0025	9E-6		1.2352	[0.69-1.78] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1587	chr5	131402737	131402738	rs3091338	22412388	Kenny EE	2012-03-08	PLoS Genet	A genome-wide scan of Ashkenazi Jewish Crohn's disease suggests novel susceptibility loci.	Crohn's disease	737 Ashkenazi Jewish cases, 2,257  Ashkenazi Jewish controls	971 Ashkenazi Jewish cases, 2,124 Ashkenazi Jewish controls	5q31.1	IL3, ACSL6, P4HA2, PDLIM4, SLC22A4	rs3091338-T	0.328	4E-8		1.23	[1.08-1.42]	Affymetrix, Illumina [1060934] (imputed)	N
1587	chr5	131404092	131404093	rs11242103	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	5q31.1	Intergenic	rs11242103-G	NR	7E-20		0.0491713	[0.039-0.06] unit decrease	Illumina [13520550] (imputed)	N
1587	chr5	131404092	131404093	rs11242103	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	5q31.1	Intergenic	rs11242103-G	NR	1E-15		0.028764	[0.022-0.036] unit increase	Illumina [13519193] (imputed)	N
1587	chr5	131404092	131404093	rs11242103	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	5q31.1	Intergenic	rs11242103-G	NR	4E-17		0.0274496	[0.021-0.034] unit increase	Illumina [13520550] (imputed)	N
1587	chr5	131404092	131404093	rs11242103	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	5q31.1	Intergenic	rs11242103-G	0.414	2E-9	(women)	0.0280182	[0.019-0.037] unit increase	Illumina [13520550] (imputed)	N
1587	chr5	131404092	131404093	rs11242103	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	5q31.1	Intergenic	rs11242103-G	NR	1E-32		0.0451057	[0.038-0.053] unit increase	Illumina [13520550] (imputed)	N
1587	chr5	131408841	131408842	rs1469149	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	5q31.1	intergenic	rs1469149-A	0.586	2E-8		0.0148	[0.0095-0.0201] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1587	chr5	131411100	131411101	rs2069639	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	5q31.1		rs2069639-?	NR	9E-23				NR [~ 8900000] (imputed)	N
1587	chr5	131412237	131412238	rs25884	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	5q31.1	snoZ6	rs25884-G	0.2054	3E-47		0.06374726	[0.055-0.072] unit increase	Affymetrix [~ 2500000] (imputed)	N
1587	chr5	131412237	131412238	rs25884	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	5q31.1	snoZ6	rs25884-G	0.2055	1E-40		0.05900478	[0.05-0.068] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1587	chr5	131412237	131412238	rs25884	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	5q31.1	snoZ6	rs25884-G	0.2053	9E-54		0.06802242	[0.059-0.077] unit increase	Affymetrix [~ 2500000] (imputed)	N
1587	chr5	131412237	131412238	rs25884	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	5q31.1	snoZ6	rs25884-G	0.2055	5E-48		0.06446065	[0.056-0.073] unit increase	Affymetrix [~ 2500000] (imputed)	N
1587	chr5	131412237	131412238	rs25884	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	5q31.1	snoZ6	rs25884-G	0.2053	3E-54		0.06841243	[0.06-0.077] unit increase	Affymetrix [~ 2500000] (imputed)	N
1587	chr5	131413254	131413255	rs27438	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	5q31.1	snoZ6	rs27438-A	0.210813	5E-75		0.053458527	[0.048-0.059] unit increase	Affymetrix [93095623] (imputed)	N
1587	chr5	131413254	131413255	rs27438	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	5q31.1	snoZ6	rs27438-A	0.210798	8E-63		0.048913673	[0.043-0.055] unit increase	Affymetrix [93095623] (imputed)	N
1587	chr5	131420248	131420249	rs3864277	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	5q31.1	Intergenic	rs3864277-G	NR	2E-10	(men)	0.0284093	[0.02-0.037] unit decrease	Illumina [13520550] (imputed)	N
1587	chr5	131430117	131430118	rs657075	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	5q31.1		rs657075-G	0.906	6E-16				Affymetrix [10369434] (imputed)	N
1587	chr5	131430117	131430118	rs657075	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	5q31.1	IL3, CSF2	rs657075-A	NR	1E-6		0.0897008	[0.039-0.14] unit increase	Illumina [8380626] (imputed)	N
1587	chr5	131430117	131430118	rs657075	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	5q31.1	IL3, CSF2	rs657075-A	0.35	8E-6	(East Asian)	0.11573	[0.065-0.167] unit increase	Illumina [8380626] (imputed)	N
1587	chr5	131430117	131430118	rs657075	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	5q31.1	CSF2, IL3	rs657075-A	0.35	6E-6	(East Asian)	1.12	[1.07-1.18]	Affymetrix, Illumina [up to 9739303] (imputed)	N
1587	chr5	131430117	131430118	rs657075	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	5q31.1	CSF2, IL3	rs657075-A	0.17	8E-7		1.09	[1.05-1.13]	Affymetrix, Illumina [up to 9739303] (imputed)	N
1587	chr5	131430117	131430118	rs657075	22446963	Okada Y	2012-03-25	Nat Genet	Meta-analysis identifies nine new loci associated with rheumatoid arthritis in the Japanese population.	Rheumatoid arthritis	4,074 Japanese ancestry cases, 16,891 Japanese ancestry controls	5,277 Japanese ancestry cases, 21,684 Japanese ancestry controls	5q31.1	CSF2	rs657075-A	0.36	3E-10		1.12	[1.08-1.15]	Affymetrix, Illumina [1948139]	N
1587	chr5	131435137	131435138	rs72789391	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	5q31.1		rs72789391-C	0.977	6E-10				Affymetrix [10369434] (imputed)	N
1587	chr5	131437531	131437532	rs154735	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	5q31.1		rs154735-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1587	chr5	131457752	131457753	rs12719453	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Perceived unattractiveness to mosquitoes	16,576 European ancestry individuals	NA	5q31.1	intergenic	rs12719453-G	NR	2E-7		0.128408	[0.08-0.177] unit increase	Illumina [7433384] (imputed)	N
1587	chr5	131459600	131459601	rs112292867	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q31.1	NR	rs112292867-C	0.01568	1E-8	(TPM4)	0.1024	NR unit increase	Illumina [1671387] (imputed)	N
1587	chr5	131461340	131461341	rs152197	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	5q31.1		rs152197-C	0.825	2E-26				Affymetrix [10369434] (imputed)	N
1588	chr5	131466628	131466629	rs3843503	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	5q31.1	P4HA2-AS1	rs3843503-A	0.4482	7E-15		0.0187	[0.014-0.023] unit decrease	Affymetrix [19819130] (imputed)	N
1588	chr5	131466628	131466629	rs3843503	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	5q31.1	P4HA2-AS1	rs3843503-A	0.4482	1E-6		0.0118	[0.0071-0.0165] unit increase	Affymetrix [19819130] (imputed)	N
1588	chr5	131466628	131466629	rs3843503	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	5q31.1	P4HA2-AS1	rs3843503-A	0.4482	1E-6		0.0115	[0.0068-0.0162] unit decrease	Affymetrix [19819130] (imputed)	N
1588	chr5	131479496	131479497	rs115545556	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	5q31.1	NR	rs115545556-?	NR	5E-7				Affymetrix [5486770] (imputed)	N
1588	chr5	131492777	131492778	rs113177333	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs113177333-G	0.964547	3E-8		0.144788	[0.095-0.194] increase	Affymetrix [11014269] (imputed)	N
1588	chr5	131533443	131533444	rs152048	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	5q31.1		rs152048-T	NR	2E-13		0.026	[0.019-0.033] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
1588	chr5	131533443	131533444	rs152048	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	5q31.1	NR	rs152048-T	NR	1E-11		0.0286	[0.02-0.037] unit increase	Affymetrix [9000000] (imputed)	N
1588	chr5	131540874	131540875	rs128738	28041642	Carmona FD	2016-12-29	Am J Hum Genet	A Genome-wide Association Study Identifies Risk Alleles in Plasminogen and P4HA2 Associated with Giant Cell Arteritis.	Giant cell arteritis	2,134 European ancestry cases, 9,125 European ancestry controls	NA	5q31.1	P4HA2	rs128738-?	0.17	5E-9		1.32	[1.20-1.45]	Illumina [1844133] (imputed)	N
1588	chr5	131543765	131543766	rs185616	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	5q31.1	P4HA2	rs185616-G	0.8146	1E-8		0.1044	[0.069-0.14] unit increase	Affymetrix [~ 11900000] (imputed)	N
1588	chr5	131559455	131559456	rs186675820	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	5q31.1	P4HA2	rs186675820-C	0.005	5E-15		0.2121738	[0.16-0.27] unit increase	Affymetrix [~ 2500000] (imputed)	N
1588	chr5	131561371	131561372	rs72793278	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	5q31.1	HINT1, LYRM7, CDC42SE2, RAPGEF6, CTC-432M15.3, FNIP1, ACSL6, IL3, CSF2, P4HA2, PDLIM4, SLC22A4, SLC22A5, C5orf56	rs72793278-?		3E-9				NR [7428630] (imputed)	N
1588	chr5	131563500	131563501	rs113823725	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C1QTNF5	5,359 Icelandic ancestry individuals	NA	5q31.1		rs113823725-G	0.4182	1E-16		0.15425	[0.12-0.19] unit decrease	Illumina [7506463] (imputed)	N
1588	chr5	131563570	131563571	rs157577	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	5q31.1	NR	rs157577-?	NR	6E-11				Affymetrix [~ 8270000] (imputed)	N
1588	chr5	131564500	131564501	rs111547866	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	5q31.1		rs111547866-?	NR	1E-15				NR [9705931] (imputed)	N
1588	chr5	131565958	131565959	rs199834894	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	5q31.1	Intergenic	rs199834894-?	NR	5E-19		0.0311991	[0.024-0.038] unit decrease	Illumina [13519193] (imputed)	N
1588	chr5	131565958	131565959	rs199834894	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	5q31.1	Intergenic	rs199834894-?	NR	8E-20		0.0290066	[0.023-0.035] unit decrease	Illumina [13520550] (imputed)	N
1588	chr5	131565958	131565959	rs199834894	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	5q31.1	Intergenic	rs199834894-?	NR	1E-10	(men)	0.028714	[0.02-0.037] unit decrease	Illumina [13520550] (imputed)	N
1588	chr5	131565958	131565959	rs199834894	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	5q31.1	Intergenic	rs199834894-?	NR	1E-33		0.0448161	[0.038-0.052] unit decrease	Illumina [13520550] (imputed)	N
1588	chr5	131566567	131566568	rs747836085	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (computer use)	408,815 European ancestry individuals	NA	5q31.1	NR	rs747836085-?		3E-9		0.0139245	[0.0093-0.0185] unit increase	Affymetrix [19400418] (imputed)	N
1588	chr5	131567923	131567924	rs11955347	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5q31.1	P4HA2	rs11955347-A	0.472	9E-24	(Complement C1q tumor necrosis factor-related protein 5, C1QTNF5.7810.20.3)	0.25	[0.21-0.29] unit decrease	Affymetrix [10572788] (imputed)	N
1588	chr5	131575337	131575338	rs12521097	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	5q31.1		rs12521097-A	0.43	2E-39		13.14	z score increase	Affymetrix [9061022] (imputed)	N
1588	chr5	131575337	131575338	rs12521097	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	5q31.1		rs12521097-A	0.43	2E-16		8.21	z score increase	Affymetrix [9061022] (imputed)	N
1588	chr5	131575337	131575338	rs12521097	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	5q31.1	NR	rs12521097-A	0.4743	9E-15				NR [9056863] (imputed)	N
1588	chr5	131575337	131575338	rs12521097	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	5q31.1	Intergenic	rs12521097-G	NR	4E-12	(men)	0.0305323	[0.022-0.039] unit decrease	Illumina [13520550] (imputed)	N
1588	chr5	131580300	131580301	rs35724182	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PDLIM4	5,365 Icelandic ancestry individuals	NA	5q31.1		rs35724182-T	0.06869	1E-76		0.654811	[0.59-0.72] unit decrease	Illumina [7506463] (imputed)	N
1588	chr5	131590386	131590387	rs17516457	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	5q31.1		rs17516457-C	NR	3E-9		0.0128	[0.0085-0.0171] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
1588	chr5	131590386	131590387	rs17516457	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Perceived unattractiveness to mosquitoes	16,576 European ancestry individuals	NA	5q31.1	intergenic	rs17516457-T	NR	6E-9		0.138285	[0.092-0.185] unit decrease	Illumina [7433384] (imputed)	N
1588	chr5	131590386	131590387	rs17516457	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	5q31.1	Intergenic	rs17516457-T	NR	2E-20		0.0328262	[0.026-0.04] unit decrease	Illumina [13519193] (imputed)	N
1588	chr5	131590533	131590534	rs7727544	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	5q31.1	NR	rs7727544-T	0.56	1E-13		0.0136	[0.01-0.0172] unit increase	NR [NR]	N
1588	chr5	131590533	131590534	rs7727544	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	5q31.1	SLC22A4	rs7727544-T	0.56	7E-16	(propionylcarnitine)	0.015	[0.011-0.019] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
1588	chr5	131591724	131591725	rs112537099	32339537	Roberts V	2020-04-24	J Invest Dermatol	Genome wide association study identifies genetic associations with perceived age.	Youthful appearance (self-reported)	423,992 European ancestry individuals	NA	5q31.1	P4HA2	rs112537099-C	0.539961	6E-10		1.0273256	NR	Affymetrix [~ 9600000] (imputed)	N
1589	chr5	131596418	131596419	rs10076701	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q31.1	NR	rs10076701-C	0.478127	4E-30				Affymetrix, Illumina [23472807] (imputed)	N
1589	chr5	131596418	131596419	rs10076701	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	5q31.1	NR	rs10076701-C	0.55724	6E-33		0.022827	[0.019-0.027] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1589	chr5	131597004	131597005	rs7735891	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	5q31.1	PDLIM4	rs7735891-T	0.4629	1E-42		0.0259	[0.022-0.03] unit increase	Affymetrix [18391927] (imputed)	N
1589	chr5	131597004	131597005	rs7735891	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	5q31.1	P4HA2, PDLIM4	rs7735891-T	0.4659	7E-8		0.0366	[0.023-0.05] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1589	chr5	131605671	131605671	rs146077748	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	5q31.1		rs146077748-ATG	NR	6E-61		0.0277	[0.024-0.031] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1589	chr5	131607299	131607300	rs55722650	33608531	Wu Y	2021-02-19	Nat Commun	GWAS of peptic ulcer disease implicates Helicobacter pylori infection, other gastrointestinal disorders and depression.	Inflammatory bowel disease	7,045 European ancestry cases, 449,282 European ancestry controls	NA	5q31.1	NR	rs55722650-C	0.58	5E-9		0.9	[NR]	NR [8546065] (imputed)	N
1589	chr5	131607299	131607300	rs55722650	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	5q31.1	PDLIM4	rs55722650-T	0.41	3E-20		0.0490999	[0.039-0.06] unit decrease	Illumina [13520550] (imputed)	N
1589	chr5	131607319	131607320	rs162885	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin I concentration	1,606 African American individuals	NA	5q31.1		rs162885-?	NR	1E-6		0.25	[0.15-0.35] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1589	chr5	131607720	131607721	rs10479001	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	5q31.1	NR	rs10479001-T	NR	1E-9		0.0354	[0.024-0.047] unit decrease	Affymetrix [9000000] (imputed)	N
1589	chr5	131607720	131607721	rs10479001	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	5q31.1	NR	rs10479001-T	NR	3E-10		0.0367	[0.025-0.048] unit increase	Affymetrix [9000000] (imputed)	N
1589	chr5	131607720	131607721	rs10479001	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	5q31.1	BC030525	rs10479001-T	0.042	1E-8		0.0564112	[0.037-0.076] unit increase	Affymetrix [16832071] (imputed)	N
1589	chr5	131616289	131616290	rs6864922	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	5q31.1	PDLIM4	rs6864922-C	0.93734375	1E-44	(PDLIM4, 12387_7_3)	0.6756515	[0.58-0.77] unit increase	Illumina [> 1000000] (imputed)	N
1589	chr5	131623357	131623358	rs7705189	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5q31.1		rs7705189-?	NR	7E-109				NR [~ 8900000] (imputed)	N
1589	chr5	131623657	131623658	rs162890	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals, 6,795 African American individuals, 6,324 East Asian ancestry individuals, 2,335 South Asian ancestry individuals, 1,442 Hispanic individuals	NA	5q31.1	SLC22A4	rs162890-T	NR	8E-10		0.0132	[0.0091-0.0173] unit increase	Affymetrix, Illumina [8034757] (imputed)	N
1589	chr5	131623657	131623658	rs162890	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals	NA	5q31.1	SLC22A4	rs162890-T	0.3317	6E-10		0.0134553	[0.0092-0.0177] unit increase	Affymetrix, Illumina [8603712] (imputed)	N
1589	chr5	131626111	131626112	rs157572	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	5q31.1	NR	rs157572-?	NR	2E-8	(CSF)			NR [9227495] (imputed)	N
1589	chr5	131627839	131627840	rs270610	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	5q31.1		rs270610-G	0.307104	3E-8		0.0248276	[0.016-0.034] unit decrease	NR [11722792] (imputed)	N
1589	chr5	131630851	131630852	rs35260072	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	5q31.1	SLC22A4	rs35260072-C	NR	8E-38		0.0482062	[0.041-0.056] unit increase	Illumina [13520550] (imputed)	N
1589	chr5	131633354	131633355	rs419291	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	5q31.1	SLC22A4	rs419291-T	0.3876	2E-9		0.0021	[0.0013-0.0029] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
1589	chr5	131633354	131633355	rs419291	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	5q31.1	SLC22A4	rs419291-T	0.37	3E-18	(carnitine)	0.008	[0.006-0.01] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
1589	chr5	131638323	131638324	rs72795121	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q31.1	NR	rs72795121-A	0.39296	1E-9				Affymetrix, Illumina [19905671] (imputed)	N
1589	chr5	131638816	131638817	rs272838	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	5q31.1		rs272838-C	0.833448	1E-9		0.0329999	[0.022-0.044] unit decrease	NR [11722792] (imputed)	N
1589	chr5	131638816	131638817	rs272838	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	5q31.1		rs272838-C	0.833448	3E-9		0.0320062	[0.021-0.043] unit decrease	NR [11722792] (imputed)	N
1589	chr5	131638816	131638817	rs272838	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	5q31.1		rs272838-C	0.833448	8E-10		0.0335556	[0.023-0.044] unit increase	NR [11722792] (imputed)	N
1589	chr5	131638816	131638817	rs272838	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	5q31.1	NR	rs272838-T	NR	1E-9		0.0197	[0.013-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
1589	chr5	131640535	131640536	rs6860806	32424353	Zhang H	2020-05-18	Nat Genet	Genome-wide association study identifies 32 novel breast cancer susceptibility loci from overall and subtype-specific analyses.	Breast cancer	133,384 European ancestry cases, 113,789 European ancestry controls	NA	5q31.1	NR	rs6860806-?	NR	3E-8				Illumina [~ 10800000] (imputed)	N
1589	chr5	131640535	131640536	rs6860806	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	5q31.1	NR	rs6860806-G	0.5391	8E-8	(EA)	0.0335	[0.021-0.046] unit increase	Illumina [~ 11800000] (imputed)	N
1589	chr5	131652528	131652529	rs11950562	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	5q31.1		rs11950562-A	0.525	9E-22				Affymetrix [10369434] (imputed)	N
1589	chr5	131652528	131652529	rs11950562	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	5q31.1	AC034220.3, SLC22A4	rs11950562-C	0.4766	3E-33		0.04343237	[0.036-0.051] unit increase	Affymetrix [~ 2500000] (imputed)	N
1589	chr5	131652528	131652529	rs11950562	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	5q31.1	SLC22A4	rs11950562-A	0.53	7E-11	(homostachydrine)	0.03	[0.020-0.040] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
1589	chr5	131652528	131652529	rs11950562	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	5q31.1	SLC22A4	rs11950562-A	0.52	2E-41	(isovalerylcarnitine)	0.036	[0.03-0.042] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
1589	chr5	131656699	131656700	rs270602	26068415	Draisma HHM	2015-06-12	Nat Commun	Genome-wide association study identifies novel genetic variants contributing to variation in blood metabolite levels.	Acylcarnitine levels	up to 7,478 European ancestry individuals	1,182 European ancestry individuals	5q31.1	SLC22A4, SLC22A5	rs270602-T	0.3826	2E-15	(Acetylcarnitine)	0.0505	[0.038-0.063] unit increase	Affymetrix, Illumina [at least 296619] (imputed)	N
1589	chr5	131656996	131656997	rs270601	26068415	Draisma HHM	2015-06-12	Nat Commun	Genome-wide association study identifies novel genetic variants contributing to variation in blood metabolite levels.	Acylcarnitine levels	up to 7,478 European ancestry individuals	1,182 European ancestry individuals	5q31.1	SLC22A4, SLC22A5	rs270601-T	0.2979	8E-16	(Octadecenoylcarnitine)	0.0433	[0.033-0.054] unit increase	Affymetrix, Illumina [at least 296619] (imputed)	N
1589	chr5	131659617	131659618	rs273917	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Degree of unsaturation	115,006 European ancestry individuals	NA	5q31.1		rs273917-A	0.292876	1E-14		0.0330783	[0.025-0.042] unit decrease	NR [11722792] (imputed)	N
1589	chr5	131660430	131660431	rs273914	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	5q31.1	SLC22A4	rs273914-A	0.37	3E-11	(oleoylcarnitine)	0.023	[0.015-0.031] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
1589	chr5	131661155	131661156	rs273913	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	5q31.1	SLC22A4	rs273913-T	0.38	1E-25	(3-dehydrocarnitine)	0.026	[0.02-0.032] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
1589	chr5	131661155	131661156	rs273913	23093944	Krumsiek J	2012-10-18	PLoS Genet	Mining the unknown: a systems approach to metabolite identification combining genetic and metabolic information.	Serum metabolite levels	1,678 European ancestry individuals	NA	5q31.1	PDLIM4, SLC22A4, SLC22A5	rs273913-?	NR	2E-11	(3dehydrocarnitine)	0.0298	[NR] unit increase	Affymetrix [655658]	N
1589	chr5	131661348	131661349	rs273912	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Docosahexaenoic acid levels	115,006 European ancestry individuals	NA	5q31.1		rs273912-G	0.292916	1E-9		0.0260377	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
1589	chr5	131664516	131664522	rs538021413	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	5q31.1		rs538021413-T	NR	3E-12		0.0169	[0.012-0.022] unit increase	Affymetrix, Illumina [20535842] (imputed)	N
1589	chr5	131664516	131664522	rs538021413	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	5q31.1		rs538021413-T	NR	4E-15		0.016	[0.012-0.02] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
1589	chr5	131664516	131664522	rs538021413	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	5q31.1		rs538021413-T	NR	1E-16		0.0207	[0.016-0.026] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
1589	chr5	131664516	131664522	rs538021413	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	5q31.1	AC034220.3, SLC22A4	rs538021413-T	0.627443	2E-10		0.015776893	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1589	chr5	131664516	131664522	rs538021413	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	5q31.1	AC034220.3, SLC22A4	rs538021413-T	0.6334	3E-10		0.02369591	[0.016-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
1589	chr5	131664528	131664529	rs199537349	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	5q31.1	LOC553103	rs199537349-T	0.51688	1E-14	(homostachydrine*)	0.172	[0.13-0.22] unit increase	Illumina [13039987] (imputed)	N
1589	chr5	131664530	131664531	rs200800380	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Creatinine levels	110,051 European ancestry individuals	NA	5q31.1		rs200800380-T	0.459053	5E-9		0.0224459	[0.015-0.03] unit decrease	NR [11722792] (imputed)	N
1589	chr5	131664530	131664531	rs200800380	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	5q31.1	AC034220.3, SLC22A4	rs200800380-C	0.539435	7E-9		0.015068927	[0.01-0.0202] unit decrease	Affymetrix [93095623] (imputed)	N
1589	chr5	131664591	131664592	rs13166503	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	5q31.1	LOC553103	rs13166503-A	0.520402	1E-14	(tryptophan betaine)	0.194	[0.15-0.24] unit increase	Illumina [13039987] (imputed)	N
1589	chr5	131665166	131665167	rs34301845	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	5q31.1		rs34301845-C	NR	9E-22		0.0226	[0.018-0.027] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
1589	chr5	131665166	131665167	rs34301845	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	5q31.1	AC034220.3, SLC22A4	rs34301845-C	0.5353	4E-15		0.02859679	[0.021-0.036] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1589	chr5	131665377	131665378	rs272889	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	5q31.1		rs272889-G	NR	2E-12		0.013	[0.0095-0.0165] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
1589	chr5	131665377	131665378	rs272889	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite ratios	Up to 5,591 European ancestry individuals	Up to 1,767 European ancestry individuals	5q31.1	SLC22A4	rs272889-A	0.37	3E-51	(valine/isovalerylcarnitine)	0.039	[0.033-0.045] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
1589	chr5	131665377	131665378	rs272889	23093944	Krumsiek J	2012-10-18	PLoS Genet	Mining the unknown: a systems approach to metabolite identification combining genetic and metabolic information.	Serum metabolite levels	1,678 European ancestry individuals	NA	5q31.1	SLC22A4, SLC22A5	rs272889-?	NR	9E-15	(isovalerylcarnitine)	0.04099	[NR] unit increase	Affymetrix [655658]	N
1589	chr5	131665377	131665378	rs272889	21886157	Suhre K	2011-08-31	Nature	Human metabolic individuality in biomedical and pharmaceutical research.	Metabolic traits	2,820 European ancestry individuals	NA	5q31.1	SLC22A4	rs272889-A	0.37	7E-16	(isovalerylcarnitine + 7 other traits)	0.084	[NR] unit increase	Affymetrix, Illumina [534665]	N
1589	chr5	131665422	131665423	rs272888	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-3 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	5q31.1		rs272888-T	0.293034	8E-11		0.028298	[0.02-0.037] unit decrease	NR [11722792] (imputed)	N
1589	chr5	131665422	131665423	rs272888	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of docosahexaenoic acid to total fatty acid levels	115,006 European ancestry individuals	NA	5q31.1		rs272888-T	0.293034	9E-9		0.0252022	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
1589	chr5	131667352	131667353	rs273909	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	5q31.1	SLC22A4, MIR3936HG	rs273909-G	0.112207	9E-6		1.05	[1.03-1.08]	NR [8126035] (imputed)	N
1589	chr5	131667352	131667353	rs273909	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	5q31.1	LOC553103, SLC22A4	rs273909-A	0.8754	5E-10		0.0488	[0.034-0.064] unit decrease	Affymetrix [at least 7947838] (imputed)	N
1589	chr5	131667352	131667353	rs273909	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	5q31.1	LOC553103, SLC22A4	rs273909-A	0.8736	3E-10		0.0534	[0.037-0.07] unit decrease	NR [8041861] (imputed)	N
1589	chr5	131671661	131671662	rs12777	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	5q31.1	SLC22A4	rs12777-C	0.975166	5E-14	(tryptophan betaine)	0.522	[0.39-0.66] unit increase	Illumina [13039987] (imputed)	N
1589	chr5	131671661	131671662	rs12777	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	5q31.1	SLC22A4	rs12777-C	0.9586	9E-11		0.005	[0.0032-0.0068] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
1589	chr5	131671661	131671662	rs12777	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	5q31.1		rs12777-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1589	chr5	131671661	131671662	rs12777	26561523	de Vries PS	2015-11-10	Hum Mol Genet	A meta-analysis of 120 246 individuals identifies 18 new loci for fibrinogen concentration.	Fibrinogen levels	120,246 European ancestry individuals	NA	5q31.1	SLC22A4	rs12777-G	0.044	9E-27		0.024	NR unit increase	Affymetrix, Illumina [~ 10700000] (imputed)	N
1589	chr5	131672656	131672657	rs56399423	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	5q31.1	NR	rs56399423-?	NR	4E-43	(EA)			Affymetrix, Illumina [~ 9000000] (imputed)	N
1589	chr5	131676319	131676320	rs1050152	30643255	Kristjansson RP	2019-01-14	Nat Genet	A loss-of-function variant in ALOX15 protects against nasal polyps and chronic rhinosinusitis.	Nasal polyps	86 European ancestry whole-genome sequenced cases, 4,280 European ancestry cases, 13,941 European ancestry whole-genome sequenced controls, 700,740 European ancestry controls	NA	5q31.1	SLC22A4	rs1050152-C	0.594	1E-8		1.1363636	[1.09-1.19]	Affymetrix, Illumina [up to 37123566] (imputed)	N
1589	chr5	131677046	131677047	rs11242109	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-3 fatty acid levels	115,006 European ancestry individuals	NA	5q31.1		rs11242109-G	0.520965	3E-9		0.0234291	[0.016-0.031] unit decrease	NR [11722792] (imputed)	N
1589	chr5	131677046	131677047	rs11242109	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycine levels	114,978 European ancestry individuals	NA	5q31.1		rs11242109-G	0.520944	9E-9		0.022428	[0.015-0.03] unit decrease	NR [11722792] (imputed)	N
1589	chr5	131677046	131677047	rs11242109	35132056	Mitchell BL	2022-02-07	Nat Commun	Genome-wide association meta-analysis identifies 29 new acne susceptibility loci.	acne vulgaris	20,165 European ancestry cases, 595,231 European ancestry controls	NA	5q31.1	NR	rs11242109-T	0.4719	3E-10		1.08	[1.05-1.1]	Affymetrix, Illumina [7072771] (imputed)	N
1589	chr5	131677046	131677047	rs11242109	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	5q31.1		rs11242109-G	0.521	1E-24				Affymetrix [10369434] (imputed)	N
1589	chr5	131677046	131677047	rs11242109	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	5q31.1		rs11242109-G	0.521	1E-19				Affymetrix [10369434] (imputed)	N
1589	chr5	131677046	131677047	rs11242109	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	5q31.1		rs11242109-G	0.521	7E-15				Affymetrix [10369434] (imputed)	N
1589	chr5	131677046	131677047	rs11242109	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	5q31.1	LOC553103	rs11242109-G	0.645469	5E-13	(hexanoylcarnitine (C6))	0.177	[0.13-0.22] unit increase	Illumina [13039987] (imputed)	N
1589	chr5	131677046	131677047	rs11242109	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	5q31.1	NR	rs11242109-T	0.477227	5E-72		0.033069	[0.029-0.037] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1589	chr5	131677046	131677047	rs11242109	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	5q31.1	NR	rs11242109-T	0.478171	5E-33		0.022463	[0.019-0.026] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1589	chr5	131677641	131677642	rs10075801	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to omega-3 fatty acids	115,006 European ancestry individuals	NA	5q31.1		rs10075801-A	0.514513	4E-9		0.02358	[0.016-0.031] unit increase	NR [11722792] (imputed)	N
1589	chr5	131677641	131677642	rs10075801	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	5q31.1	AC034220.3, SLC22A4	rs10075801-G	0.4856	7E-26		0.03816809	[0.031-0.045] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1589	chr5	131677641	131677642	rs10075801	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	5q31.1	AC034220.3, SLC22A4	rs10075801-G	0.4855	4E-22		0.03509937	[0.028-0.042] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1589	chr5	131677641	131677642	rs10075801	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	5q31.1	AC034220.3, SLC22A4	rs10075801-G	0.4855	2E-16		0.02985189	[0.023-0.037] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1589	chr5	131677641	131677642	rs10075801	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	5q31.1	AC034220.3, SLC22A4	rs10075801-G	0.4855	8E-16		0.02915474	[0.022-0.036] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1589	chr5	131677641	131677642	rs10075801	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	5q31.1	AC034220.3, SLC22A4	rs10075801-G	0.4855	5E-25		0.0376138	[0.03-0.045] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1589	chr5	131677641	131677642	rs10075801	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	5q31.1	AC034220.3, SLC22A4	rs10075801-G	0.4855	8E-23		0.03571686	[0.029-0.043] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1589	chr5	131677996	131677997	rs272869	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in non-smokers	77,113 European ancestry women, 47,319 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	5q31.1	SLC22A4	rs272869-A	0.4005	2E-7		0.0205	[0.013-0.028] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1589	chr5	131677996	131677997	rs272869	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	5q31.1	SLC22A4	rs272869-A	0.4005	2E-8				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1589	chr5	131677996	131677997	rs272869	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	5q31.1	SLC22A4	rs272869-A	0.4005	2E-8		0.0194	[0.013-0.026] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1589	chr5	131677996	131677997	rs272869	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	5q31.1	SLC22A4	rs272869-A	0.4038	7E-10	(EA)	0.0212	[0.015-0.028] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1589	chr5	131677996	131677997	rs272869	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	5q31.1	SLC22A4	rs272869-A	0.4038	2E-7	(EA, men)	0.025	[0.016-0.034] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1589	chr5	131677996	131677997	rs272869	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	5q31.1	SLC22A4	rs272869-A	0.37	1E-11	(hexanoylcarnitine)	0.022	[0.016-0.028] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
1589	chr5	131682785	131682792	rs147858478	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	5q31.1	AC034220.3	rs147858478-C	0.6265	4E-9		0.02173947	[0.014-0.029] unit increase	Affymetrix [~ 2500000] (imputed)	N
1589	chr5	131686145	131686146	rs10058074	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q31.1	NR	rs10058074-A	0.362436	4E-71				Affymetrix, Illumina [24649327] (imputed)	N
1589	chr5	131686145	131686146	rs10058074	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	5q31.1	AC034220.3	rs10058074-A	0.4743	3E-18		0.03170327	[0.025-0.039] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1589	chr5	131686145	131686146	rs10058074	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	5q31.1	FLJ44796	rs10058074-A	0.45	4E-12		1.15	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
1589	chr5	131694076	131694077	rs4705938	33199917	Bakker MK	2020-11-16	Nat Genet	Genome-wide association study of intracranial aneurysms identifies 17 risk loci and genetic overlap with clinical risk factors.	Intracranial aneurysm	7,495 European ancestry cases, 71,934 European ancestry controls	NA	5q31.1	SLC22A5, SLC22A4, P4HA2	rs4705938-T	0.5494	3E-10		0.1198	[0.083-0.157] unit increase	Affymetrix, Illumina [4471083] (imputed)	N
1589	chr5	131694076	131694077	rs4705938	33199917	Bakker MK	2020-11-16	Nat Genet	Genome-wide association study of intracranial aneurysms identifies 17 risk loci and genetic overlap with clinical risk factors.	Intracranial aneurysm	7,495 European ancestry cases, 3,259 East Asian ancestry cases, 71,934 European ancestry controls, 234,948 East Asian ancestry controls	NA	5q31.1	SLC22A5, SLC22A4, P4HA2	rs4705938-T	0.549	3E-10		0.12	[0.083-0.157] unit increase	Affymetrix, Illumina [3527309] (imputed)	N
1589	chr5	131694076	131694077	rs4705938	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	5q31.1		rs4705938-?	NR	4E-17				NR [~ 8900000] (imputed)	N
1589	chr5	131699866	131699867	rs274546	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	5q31.1	SLC22A5	rs274546-A	0.4	7E-16		0.029	[NR] unit decrease	Affymetrix, Illumina [2834208] (imputed)	N
1589	chr5	131705345	131705346	rs60978556	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	5q31.1		rs60978556-?	NR	4E-11				NR [~ 8900000] (imputed)	N
1589	chr5	131705457	131705458	rs2631367	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Pyruvate levels	114,749 European ancestry individuals	NA	5q31.1		rs2631367-C	0.47898	5E-19		0.0368659	[0.029-0.045] unit decrease	NR [11722792] (imputed)	N
1589	chr5	131705457	131705458	rs2631367	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	5q31.1		rs2631367-G	NR	3E-42		0.0325	[0.028-0.037] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
1589	chr5	131705457	131705458	rs2631367	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	5q31.1		rs2631367-G	NR	3E-24		0.0242	[0.019-0.029] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
1589	chr5	131705457	131705458	rs2631367	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	5q31.1	LOC553103	rs2631367-C	0.363373	7E-11	(2-methylbutyrylcarnitine (C5))	0.157	[0.11-0.2] unit decrease	Illumina [13039987] (imputed)	N
1589	chr5	131705457	131705458	rs2631367	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	1,509 European ancestry individuals	5q31.1	LOC553103	rs2631367-C	0.363373	7E-11	(2-methylbutyrylcarnitine (C5))	0.157	[0.11-0.2] unit decrease	Illumina [13039987] (imputed)	N
1589	chr5	131705457	131705458	rs2631367	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	5q31.1	SLC22A5	rs2631367-G	0.521768	2E-40		0.030818256	[0.026-0.035] unit increase	Affymetrix [93095623] (imputed)	N
1589	chr5	131705457	131705458	rs2631367	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	5q31.1	SLC22A5	rs2631367-C	0.478256	5E-25		0.022961546	[0.019-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1589	chr5	131705457	131705458	rs2631367	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q31.1	NR	rs2631367-G	0.59868	6E-31				Affymetrix, Illumina [23467995] (imputed)	N
1589	chr5	131705457	131705458	rs2631367	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q31.1	NR	rs2631367-C	0.46867	6E-111				Affymetrix, Illumina [17210439] (imputed)	N
1589	chr5	131705457	131705458	rs2631367	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	5q31.1	NR	rs2631367-C	0.477469	5E-109		0.042603	[0.039-0.046] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1589	chr5	131705457	131705458	rs2631367	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	5q31.1		rs2631367-?	NR	2E-56				NR [~ 8900000] (imputed)	N
1589	chr5	131707094	131707095	rs2631363	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	5q31.1	SLC22A5	rs2631363-A	0.664035	2E-14	(ergothioneine)	0.168	[0.12-0.21] unit increase	Illumina [13039987] (imputed)	N
1589	chr5	131707094	131707095	rs2631363	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	1,509 European ancestry individuals	5q31.1	SLC22A5	rs2631363-A	0.664035	2E-14	(ergothioneine)	0.168	[0.12-0.21] unit increase	Illumina [13039987] (imputed)	N
1589	chr5	131707428	131707429	rs2631360	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	5q31.1	SLC22A5	rs2631360-A	0.520769	6E-78		0.04186384	[0.037-0.046] unit decrease	Affymetrix [93095623] (imputed)	N
1589	chr5	131707536	131707537	rs62384157	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	5q31.1		rs62384157-A	0.828173	4E-8		0.0292666	[0.019-0.04] unit decrease	NR [11722792] (imputed)	N
1589	chr5	131707536	131707537	rs62384157	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	5q31.1		rs62384157-A	0.828173	6E-10		0.0333836	[0.023-0.044] unit decrease	NR [11722792] (imputed)	N
1589	chr5	131707536	131707537	rs62384157	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	5q31.1		rs62384157-A	0.828173	3E-8		0.0298298	[0.019-0.04] unit increase	NR [11722792] (imputed)	N
1589	chr5	131707536	131707537	rs62384157	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	5q31.1		rs62384157-A	0.828173	9E-9		0.0311068	[0.02-0.042] unit increase	NR [11722792] (imputed)	N
1589	chr5	131708876	131708877	rs10060615	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Diastolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	5q31.1	SLC22A5	rs10060615-C	0.5313	6E-9		0.1483	[0.098-0.198] mmHg increase	Affymetrix [NR] (imputed)	N
1589	chr5	131709911	131709911	rs546280079	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small LDL	115,082 European ancestry individuals	NA	5q31.1		rs546280079-C	0.818631	3E-8		0.0302217	[0.02-0.041] unit increase	NR [11722792] (imputed)	N
1589	chr5	131709911	131709911	rs546280079	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small LDL	115,082 European ancestry individuals	NA	5q31.1		rs546280079-C	0.818631	3E-9		0.0321891	[0.022-0.043] unit increase	NR [11722792] (imputed)	N
1589	chr5	131709911	131709911	rs546280079	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	5q31.1		rs546280079-C	0.818631	3E-8		0.0302307	[0.02-0.041] unit increase	NR [11722792] (imputed)	N
1589	chr5	131709911	131709911	rs546280079	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	5q31.1		rs546280079-C	0.818611	8E-9		0.0298511	[0.02-0.04] unit increase	NR [11722792] (imputed)	N
1589	chr5	131709911	131709911	rs546280079	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	5q31.1	SLC22A5	rs546280079-?	NR	7E-9		0.0195	[0.014-0.025] unit decrease	Affymetrix [5701386] (imputed)	N
1589	chr5	131710450	131710453	rs34965096	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	5q31.1	SLC22A5	rs34965096-CAAA	0.722897	6E-12	(N-trimethyl 5-aminovalerate)	0.164	[0.12-0.21] unit decrease	Illumina [13039987] (imputed)	N
1589	chr5	131714408	131714409	rs274567	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	5q31.1	SLC22A4	rs274567-T	0.37	3E-12	(acetylcarnitine)	0.018	[0.012-0.024] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
1589	chr5	131721203	131721204	rs274557	24823311	Guan W	2014-05-13	Circ Cardiovasc Genet	Genome-wide association study of plasma N6 polyunsaturated fatty acids within the cohorts for heart and aging research in genomic epidemiology consortium.	Plasma omega-6 polyunsaturated fatty acid levels (arachidonic acid)	8,631 European ancestry individuals	NA	5q31.1	SLC22A5	rs274557-T	0.599	4E-6		0.14	[NR] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1589	chr5	131721748	131721749	rs7731390	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	5q31.1	NR	rs7731390-C	0.947771454651685	2E-6	(IGP42)	0.3846	[0.23-0.54] unit increase	Illumina [~ 2500000] (imputed)	N
1589	chr5	131721748	131721749	rs7731390	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	5q31.1	NR	rs7731390-C	0.947724237786775	3E-6	(IGP2)	0.3771	[0.22-0.53] unit increase	Illumina [~ 2500000] (imputed)	N
1589	chr5	131722950	131722951	rs274555	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	5q31.1		rs274555-C	0.597	1E-15				Affymetrix [10369434] (imputed)	N
1589	chr5	131722950	131722951	rs274555	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	5q31.1	NR	rs274555-?	NR	8E-9	(female)	0.14208	[0.094-0.19] unit decrease	Affymetrix [7794483] (imputed)	N
1589	chr5	131722950	131722951	rs274555	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	5q31.1	NR	rs274555-?	NR	6E-10	(male)	0.22148	[0.15-0.29] unit decrease	Affymetrix [7794483] (imputed)	N
1589	chr5	131722950	131722951	rs274555	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	5q31.1	NR	rs274555-?	NR	2E-16		0.18633	[0.14-0.23] unit decrease	Affymetrix [7794483] (imputed)	N
1589	chr5	131723287	131723288	rs2073643	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	5q31.1	SLC22A5	rs2073643-T	NR	3E-20		0.0483183	[0.038-0.059] unit increase	Illumina [13520550] (imputed)	N
1589	chr5	131723287	131723288	rs2073643	20860503	Moffatt MF	2010-09-23	N Engl J Med	A large-scale, consortium-based genomewide association study of asthma.	Asthma	10,365 cases, 16,110 controls	NA	5q31.1	SLC22A5	rs2073643-T	0.45	2E-7		1.11	[1.06-1.15]	Illumina [582892]	N
1589	chr5	131724949	131724950	rs274554	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5q31.1	LOC441108	rs274554-?	NR	5E-6	(carnitine)	0.21081184	[0.12-0.3] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1589	chr5	131727032	131727033	rs11746555	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	5q31.1	SLC22A5	rs11746555-A	0.411837	1E-13		0.016767291	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1589	chr5	131727032	131727033	rs11746555	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	5q31.1	SLC22A5	rs11746555-A	0.411828	8E-13		0.016156262	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1589	chr5	131727032	131727033	rs11746555	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Autoimmune traits	approximately 459,000 European ancestry individuals	NA	5q31.1		rs11746555-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1590	chr5	131732773	131732774	rs17689595	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	5q31.1		rs17689595-G	0.827078	1E-8		0.0310503	[0.02-0.042] unit increase	NR [11722792] (imputed)	N
1590	chr5	131732773	131732774	rs17689595	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	5q31.1	SLC22A5	rs17689595-A	0.172356	1E-22		0.029178059	[0.023-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
1590	chr5	131739432	131739433	rs6893782	26068415	Draisma HHM	2015-06-12	Nat Commun	Genome-wide association study identifies novel genetic variants contributing to variation in blood metabolite levels.	Acylcarnitine levels	up to 7,478 European ancestry individuals	1,182 European ancestry individuals	5q31.1	SLC22A4, SLC22A5	rs6893782-A	0.8273	1E-17	(Carnitine)	0.0449	[0.035-0.055] unit increase	Affymetrix, Illumina [at least 296619] (imputed)	N
1590	chr5	131741695	131741696	rs2405522	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	5q31.1	SLC22A4	rs2405522-A	0.17	4E-29	(tryptophan betaine )	0.126	[0.1-0.15] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
1590	chr5	131742227	131742228	rs6596075	17554300	Wellcome Trust Case Control Consortium	2007-06-07	Nature	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Crohn's disease	1,748 European ancestry cases, 2,938 European ancestry controls	(see Parkes 2007)	5q31.1	intergenic	rs6596075-C	0.17	3E-6		1.55	[1.00-2.39]	Affymetrix [469557]	N
1590	chr5	131744100	131744101	rs13189284	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	5q31.1	C5orf56	rs13189284-C	0.954326	6E-10		0.032704383	[0.022-0.043] unit decrease	Affymetrix [93095623] (imputed)	N
1590	chr5	131744573	131744574	rs1016988	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	5q31.1	NR	rs1016988-C	NR	5E-10		0.0187	[0.013-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
1590	chr5	131744573	131744574	rs1016988	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	5q31.1	NR	rs1016988-C	NR	9E-10		0.0184	[0.013-0.024] unit increase	Affymetrix [9000000] (imputed)	N
1590	chr5	131744573	131744574	rs1016988	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	5q31.1	NR	rs1016988-C	NR	2E-11		0.0202	[0.014-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
1590	chr5	131744573	131744574	rs1016988	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	5q31.1	NR	rs1016988-C	NR	5E-13		0.0218	[0.016-0.028] unit decrease	Affymetrix [9000000] (imputed)	N
1590	chr5	131744573	131744574	rs1016988	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	5q31.1	C5orf56	rs1016988-T	0.809091	5E-11		0.017412	[0.012-0.023] unit increase	Affymetrix [NR] (imputed)	N
1590	chr5	131744573	131744574	rs1016988	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	Low density lipoprotein cholesterol levels	up to 237,050 European ancestry individuals, up to 16,935 African ancestry individuals, up to 30,468 South Asian ancestry individuals, up to 8,287 East Asian ancestry individuals, 5,084 Hispanic individuals	up to 286,268 European and unknown ancestry individuals	5q31.1	SLC22A5	rs1016988-C	NR	1E-12		0.015862308	[0.012-0.02] unit increase	Illumina [242289]	N
1590	chr5	131744573	131744574	rs1016988	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	Low density lipoprotein cholesterol levels	up to 237,050 European ancestry individuals	NA	5q31.1	NR	rs1016988-C	0.21	5E-7		0.019	unit decrease	Illumina [242289]	N
1590	chr5	131744573	131744574	rs1016988	20031577	Danik JS	2009-04-01	Circ Cardiovasc Genet	Novel loci, including those related to Crohn disease, psoriasis, and inflammation, identified in a genome-wide association study of fibrinogen in 17 686 women: the Women's Genome Health Study.	Fibrinogen	17,686 European ancestry female individuals	NA	5q31.1	IRF1, SLC22A5, SLC22A4	rs1016988-G	0.20	1E-12		6.84	[NR] mg/dl decrease	Illumina [337343]	N
1590	chr5	131755476	131755477	rs4451042	33437055	Panyard DJ	2021-01-12	Commun Biol	Cerebrospinal fluid metabolomics identifies 19 brain-related phenotype associations.	Tryptophan betaine levels	291 European ancestry individuals	NA	5q31.1		rs4451042-T	0.9515	5E-11		0.5353	unit increase	Illumina [7049691] (imputed)	N
1590	chr5	131755650	131755651	rs1003533	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	5q31.1	C5orf56	rs1003533-C	0.811671	6E-14		0.0199788	[0.015-0.025] unit increase	Affymetrix [NR] (imputed)	N
1590	chr5	131756057	131756058	rs11242111	23969696	Sabater-Lleal M	2013-08-22	Circulation	Multiethnic meta-analysis of genome-wide association studies in >100 000 subjects identifies 23 fibrinogen-associated Loci but no strong evidence of a causal association between circulating fibrinogen and cardiovascular disease.	Fibrinogen	91,323 European ancestry individuals	8,423 African American individuals, 1,447 Hispanic individuals	5q31.1	C5orf56, IRF1	rs11242111-A	0.05	2E-21	(EA)	0.023	[0.019-0.027] unit increase	Affymetrix, Illumina [2515567] (imputed)	N
1590	chr5	131756531	131756532	rs1981525	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	5q31.1	NR	rs1981525-T	0.051042	6E-12		0.029531	[0.021-0.038] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
1590	chr5	131757100	131757101	rs1004234	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	5q31.1	C5orf56	rs1004234-?	NR	4E-7	(subset analysis)			Illumina [130052]	N
1590	chr5	131757479	131757480	rs10900807	30837465	Wittemans LBL	2019-03-05	Nat Commun	Assessing the causal association of glycine with risk of cardio-metabolic diseases.	Glycine levels	80,003 European ancestry individuals	NA	5q31.1	C5orf56	rs10900807-G	0.805	1E-9		0.036	[0.022-0.05] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1590	chr5	131758711	131758712	rs2269822	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	5q31.1	C5orf56, AC116366.5	rs2269822-C	0.88114	9E-10		0.020945037	[0.014-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1590	chr5	131760730	131760731	rs10076733	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	5q31.1	C5orf56	rs10076733-T	0.22	4E-7	(conditional on rs62375246)	1.06	[NR]	Affymetrix, Illumina [6224355] (imputed)	N
1590	chr5	131766763	131766763	rs766751473	34012112	Chiou J	2021-05-19	Nature	Interpreting type 1 diabetes risk with genetics and single-cell epigenomics.	Type 1 diabetes	18,942 European ancestry cases, 501,638 European ancestry controls	NA	5q31.1	IRF1	rs766751473-T	0.40393	1E-8		0.080249354	[0.053-0.108] unit increase	Affymetrix, Illumina [62116689] (imputed)	N
1590	chr5	131769173	131769174	rs2106854	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	5q31.1	NR	rs2106854-T	0.18674000000000002	1E-9		0.00913689	[0.0062-0.012] unit increase	Affymetrix [16582621] (imputed)	N
1590	chr5	131769173	131769174	rs2106854	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	5q31.1	NR	rs2106854-T	0.18674000000000002	2E-6		0.00796123	[0.0049-0.0111] unit increase	Affymetrix [16582614] (imputed)	N
1590	chr5	131769173	131769174	rs2106854	23969696	Sabater-Lleal M	2013-08-22	Circulation	Multiethnic meta-analysis of genome-wide association studies in >100 000 subjects identifies 23 fibrinogen-associated Loci but no strong evidence of a causal association between circulating fibrinogen and cardiovascular disease.	Fibrinogen	91,323 European ancestry individuals	8,423 African American individuals, 1,447 Hispanic individuals	5q31.1	C5orf56, IRF1	rs2106854-T	0.21	2E-48	(EA)	0.019	[0.017-0.021] unit decrease	Affymetrix, Illumina [2515567] (imputed)	N
1590	chr5	131770804	131770805	rs2188962	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Ulcerative colitis	12,366 European and unknown ancestry cases, 33,609 European and unknown ancestry controls	NA	5q31.1	IL3, CSF2, HINT1, LYRM7, SLC22A4, C5orf56, IRF1, CDC42SE2, RAPGEF6, ACSL6, P4HA2, PDLIM4, SLC22A5, CTC-432M15.3, FNIP1	rs2188962-?		2E-6				Illumina [9578670] (imputed)	N
1590	chr5	131770804	131770805	rs2188962	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	5q31.1	IL3, CSF2, HINT1, LYRM7, SLC22A4, C5orf56, IRF1, CDC42SE2, RAPGEF6, ACSL6, P4HA2, PDLIM4, SLC22A5, CTC-432M15.3, FNIP1	rs2188962-?		4E-27				Illumina [9725440] (imputed)	N
1590	chr5	131770804	131770805	rs2188962	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	5q31.1	IL3, CSF2, HINT1, LYRM7, SLC22A4, C5orf56, IRF1, CDC42SE2, RAPGEF6, ACSL6, P4HA2, PDLIM4, SLC22A5, CTC-432M15.3, FNIP1	rs2188962-?		6E-36				Illumina [9560910] (imputed)	N
1590	chr5	131770804	131770805	rs2188962	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Diastolic blood pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	154,543 European ancestry individuals, 26,183 South Asian ancestry individuals	5q31.1	C5orf56	rs2188962-T	0.366	3E-11		0.2	[0.14-0.26] unit decrease	Illumina [247039]	N
1590	chr5	131770804	131770805	rs2188962	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	5q31.1	CSF2, IL13, IL4, IL5, IL3, IRF1, SLC22A5, ACSL6, PDLIM4, SLC22A4	rs2188962-T	0.425	1E-52		1.158	[1.125-1.191]	Affymetrix, Illumina [1230000] (imputed)	N
1590	chr5	131770804	131770805	rs2188962	20570966	McGovern DP	2010-06-22	Hum Mol Genet	Fucosyltransferase 2 (FUT2) non-secretor status is associated with Crohn's disease.	Crohn's disease	896 European ancestry cases, 3,204 European ancestry controls	1,174 European ancestry cases, 357 European ancestry controls	5q31.1	IBD5	rs2188962-?	NR	1E-7		1.36	[1.21-1.52]	Illumina [304825]	N
1590	chr5	131770804	131770805	rs2188962	18587394	Barrett JC	2008-06-29	Nat Genet	Genome-wide association defines more than 30 distinct susceptibility loci for Crohn's disease.	Crohn's disease	3,230 European ancestry cases, 4,829 European ancestry controls	1,339 European ancestry trios, 2,325 European ancestry cases, 1,809 European ancestry controls	5q31.1	intergenic	rs2188962-T	0.43	2E-18		1.25	[NR]	Affymetrix, Illumina [635547] (imputed)	N
1590	chr5	131777233	131777234	rs11242113	31630189	Casanova F	2019-10-20	Hum Mol Genet	A genome-wide association study implicates multiple mechanisms influencing raised urinary albumin-creatinine ratio.	Urinary albumin-to-creatinine ratio	437,027 European ancestry individuals	60,130 individuals	5q31.1	C5orf56	rs11242113-A	0.188	2E-9	(EA)	0.016	[0.01-0.022] unit increase	NR [12082474] (imputed)	N
1590	chr5	131778451	131778452	rs17622378	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (childhood onset)	9,433 British ancestry cases, 318,237 British ancestry controls	NA	5q31.1	C5orf56, SLC22A5, IRF1	rs17622378-A	0.573	9E-11		1.103	[1.071-1.136]	Affymetrix [10894596] (imputed)	N
1590	chr5	131778451	131778452	rs17622378	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (adult onset)	21,564 British ancestry cases, 318,237 British ancestry controls	NA	5q31.1	C5orf56, SLC22A5, IRF1	rs17622378-A	0.573	3E-13		1.077	[1.055-1.098]	Affymetrix [10894596] (imputed)	N
1590	chr5	131778451	131778452	rs17622378	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	5q31.1	C5orf56	rs17622378-?	NR	2E-55	(subset analysis)			Illumina [130052]	N
1590	chr5	131778451	131778452	rs17622378	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	5q31.1	NR	rs17622378-G	0.4186	4E-11	(EA)	1.0865855	[1.06-1.11]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1590	chr5	131778451	131778452	rs17622378	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	5q31.1	NR	rs17622378-G	0.4186	1E-42	(EA)	1.1465615	[1.13-1.17]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1590	chr5	131778451	131778452	rs17622378	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	5q31.1	NR	rs17622378-G	0.4186	7E-56	(EA)	1.2094882	[1.19-1.23]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1590	chr5	131781344	131781345	rs1012793	28107422	de Vries PS	2017-01-20	PLoS One	Comparison of HapMap and 1000 Genomes Reference Panels in a Large-Scale Genome-Wide Association Study.	Fibrinogen levels	91,953 European ancestry individuals (imputed to HapMap)		5q31.1	C5orf56	rs1012793-?	NR	4E-60		0.0208	unit increase	Affymetrix, Illumina [2749429] (imputed)	N
1590	chr5	131781344	131781345	rs1012793	28107422	de Vries PS	2017-01-20	PLoS One	Comparison of HapMap and 1000 Genomes Reference Panels in a Large-Scale Genome-Wide Association Study.	Fibrinogen levels	91,953 European ancestry individuals (imputed to 1000 Genomes)		5q31.1	C5orf56	rs1012793-?	NR	1E-58		0.0207	unit increase	Affymetrix, Illumina [10883314] (imputed)	N
1590	chr5	131784004	131784005	rs6867325	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	5q31.1		rs6867325-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1590	chr5	131784392	131784393	rs12521868	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Diastolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	5q31.1	c5orf56	rs12521868-T	0.405	8E-6	(EA, initial)	0.199	[0.11-0.29] unit decrease	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
1590	chr5	131784392	131784393	rs12521868	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Diastolic blood pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	5q31.1	C5orf56	rs12521868-T	0.3757	2E-11		0.189	mmHg decrease	Illumina [242296]	N
1590	chr5	131784392	131784393	rs12521868	21102463	Franke A	2010-11-21	Nat Genet	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry trios	5q31.1	IL3, IRF1, SLC22A5, SLC22A4	rs12521868-T	0.422	1E-20		1.23	[1.18-1.28]	Affymetrix, Illumina [953241] (imputed)	N
1590	chr5	131785683	131785684	rs12515180	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	5q31.1		rs12515180-C	0.574	3E-103				Affymetrix [10369434] (imputed)	N
1590	chr5	131785683	131785684	rs12515180	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	5q31.1	C5orf56	rs12515180-T	0.425824	1E-30		0.030461727	[0.025-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
1590	chr5	131785683	131785684	rs12515180	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	5q31.1	C5orf56	rs12515180-T	0.425834	2E-26		0.031869285	[0.026-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
1590	chr5	131785683	131785684	rs12515180	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q31.1	NR	rs12515180-T	0.350652	6E-279				Affymetrix, Illumina [19872809] (imputed)	N
1590	chr5	131785683	131785684	rs12515180	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	5q31.1	NR	rs12515180-T	0.425948	3E-283		0.072098	[0.068-0.076] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
1590	chr5	131785683	131785684	rs12515180	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	5q31.1		rs12515180-?	NR	1E-271				NR [~ 8900000] (imputed)	N
1590	chr5	131787136	131787137	rs6866614	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Nasal polyps	5,093 European ancestry cases, 444,966 European ancestry controls, 160 East Asian ancestry cases, 151,846 East Asian ancestry controls	NA	5q31.1		rs6866614-G	NR	3E-12		0.1485	[0.11-0.19] unit increase	Affymetrix, Illumina [25837843] (imputed)	N
1590	chr5	131787136	131787137	rs6866614	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (adult onset)	26,582 European ancestry cases, 300,671 European ancestry controls	16,297 European ancestry cases, 217,711 European ancestry controls	5q31.1	IRF1	rs6866614-?	NR	4E-23		1.075	[1.06-1.09]	Affymetrix [9000000] (imputed)	N
1590	chr5	131787136	131787137	rs6866614	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	5q31.1	IRF1	rs6866614-G	NR	4E-25		1.074	[1.06-1.09]	Affymetrix [9000000] (imputed)	N
1590	chr5	131787136	131787137	rs6866614	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Perceived unattractiveness to mosquitoes	16,576 European ancestry individuals	NA	5q31.1	C5orf56	rs6866614-G	NR	6E-9		0.135125	[0.09-0.181] unit decrease	Illumina [7433384] (imputed)	N
1590	chr5	131788134	131788135	rs59041913	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	5q31.1	NR	rs59041913-T	0.23	5E-6		1.07	[1.04-1.1]	Affymetrix [9886854] (imputed)	N
1590	chr5	131788134	131788135	rs59041913	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	5q31.1	NR	rs59041913-T	0.23	3E-8			[NR]	Affymetrix [9886854] (imputed)	N
1590	chr5	131788134	131788135	rs59041913	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in non-current smokers	16,488 European ancestry cases, 169,688 European ancestry controls	NA	5q31.1	NR	rs59041913-T	0.23	5E-6		1.07	[1.04-1.1]	Affymetrix [9886854] (imputed)	N
1590	chr5	131788333	131788334	rs7713065	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	5q31.1	NR	rs7713065-?	NR	2E-15				Affymetrix [~ 8270000] (imputed)	N
1590	chr5	131788333	131788334	rs7713065	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	5q31.1		rs7713065-?	NR	2E-37				NR [~ 8900000] (imputed)	N
1590	chr5	131788333	131788334	rs7713065	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FEV1/FVC)	48,943 European ancestry individuals	57,176 European ancestry individuals, 38,199 individuals.	5q31.1	C5orf56	rs7713065-C	0.73	3E-11		0.029	[0.021-0.037] unit increase	Affymetrix [27624732] (imputed)	N
1590	chr5	131790615	131790616	rs10066308	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	5q31.1	C5orf56	rs10066308-A	NR	3E-7		1.0621349	NR	Affymetrix, Illumina [8278136] (imputed)	N
1590	chr5	131792401	131792402	rs2706383	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	5q31.1		rs2706383-A	NR	4E-10		0.0162	[0.011-0.021] unit decrease	Affymetrix, Illumina [20521447] (imputed)	N
1590	chr5	131793771	131793772	rs1023518	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	5q31.1	NR	rs1023518-?	NR	7E-14				Affymetrix [~ 8270000] (imputed)	N
1590	chr5	131793771	131793772	rs1023518	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	5q31.1	C5orf56, IRF1, LOC553103, MIR3936, MIR6830, P4HA2, P4HA2-AS1, PDLIM4, SLC22A4, SLC22A5	rs1023518-T	0.263924	2E-25		1.0770676	[1.06-1.09]	Affymetrix [8274727] (imputed)	N
1590	chr5	131794068	131794069	rs3857440	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Asthma	8,216 Japanese ancestry cases, 201,592 Japanese ancestry controls	NA	5q31.1		rs3857440-A	0.314416741	2E-8		1.1026152	[1.065591942-1.140924927]	Illumina [8919992] (imputed)	N
1590	chr5	131796921	131796922	rs11745587	22561531	Wan YI	2012-05-05	Thorax	Genome-wide association study to identify genetic determinants of severe asthma.	Asthma	933 European ancestry cases, 3,346 European ancestry controls	231 European ancestry cases, 1,345 European ancestry controls	5q31.1	C5orf56	rs11745587-?	NR	2E-6		1.26	[1.15-1.39]	Illumina [6103628] (imputed)	N
1590	chr5	131797546	131797547	rs6894249	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Crohn's disease vs rheumatoid arthritis (ordinary least squares (OLS))	5,956 Crohn's disease cases, 8,875 rheumatoid arthritis cases	14,594 Crohn's disease cases, 5,486 rheumatoid arthritis cases	5q31.1		rs6894249-?	NR	1E-14		0.064	NR unit increase	NR [5890016] (imputed)	N
1590	chr5	131797546	131797547	rs6894249	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	5q31.1	SLC22A5, IRF1	rs6894249-A	0.61	1E-12		7.14	z-score increase	Affymetrix [4314223] (imputed)	N
1590	chr5	131797546	131797547	rs6894249	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	5q31.1	C5orf56	rs6894249-A	0.507387	9E-26	(tryptophan betaine)	0.228	[0.18-0.27] unit increase	Illumina [13039987] (imputed)	N
1590	chr5	131797546	131797547	rs6894249	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	5q31.1		rs6894249-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1590	chr5	131797546	131797547	rs6894249	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	5q31.1	C5orf56	rs6894249-A	0.5782	6E-9		0.0154	[0.01-0.021] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1590	chr5	131797546	131797547	rs6894249	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls	NA	5q31.1	SLC22A5, IRF1	rs6894249-G	0.39	2E-11		0.09	[0.07-0.11] unit increase	Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
1590	chr5	131797546	131797547	rs6894249	23603761	Hinks A	2013-04-21	Nat Genet	Dense genotyping of immune-related disease regions identifies 14 new susceptibility loci for juvenile idiopathic arthritis.	Juvenile idiopathic arthritis (oligoarticular or rheumatoid factor-negative polyarticular)	2,816 European ancestry cases, 13,056 European ancestry controls	NA	5q31.1	IRF1, C5orf56	rs6894249-?	0.61	1E-9	(dominant model)	1.3157895	[1.20-1.43]	Illumina [123003]	N
1590	chr5	131797577	131797578	rs2522051	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	5q31.1	C5orf56	rs2522051-C	0.454525	9E-32		0.026068987	[0.022-0.03] unit increase	Affymetrix [93095623] (imputed)	N
1590	chr5	131797577	131797578	rs2522051	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q31.1	NR	rs2522051-C	0.488272	1E-33				Affymetrix, Illumina [23114412] (imputed)	N
1590	chr5	131797577	131797578	rs2522051	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	5q31.1	NR	rs2522051-C	0.454362	2E-35		0.024	[0.02-0.028] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
1590	chr5	131799372	131799373	rs80112473	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q31.1	NR	rs80112473-G	0.962334	2E-10				Affymetrix, Illumina [22063850] (imputed)	N
1590	chr5	131799431	131799431	rs201629990	32469969	Pott J	2020-05-29	PLoS One	Genome-wide analysis of carotid plaque burden suggests a role of IL5 in men.	Sum of carotid plaque area	727 European ancestry men, 550 European ancestry women	NA	5q31.1	C5orf56, IRF1, SLC22A5	rs201629990-GT	0.0381403	3E-6		0.395558	[0.23-0.56] mm2 decrease	Affymetrix [532676] (imputed)	N
1590	chr5	131799431	131799431	rs201629990	32469969	Pott J	2020-05-29	PLoS One	Genome-wide analysis of carotid plaque burden suggests a role of IL5 in men.	Sum of carotid plaque area	727 European ancestry men, 550 European ancestry women	NA	5q31.1	C5orf56, IRF1, SLC22A5	rs201629990-GT	0.0381403	1E-6	(men)	0.575534	[0.34-0.81] mm2 decrease	Affymetrix [532676] (imputed)	N
1590	chr5	131799431	131799431	rs201629990	32469969	Pott J	2020-05-29	PLoS One	Genome-wide analysis of carotid plaque burden suggests a role of IL5 in men.	Mean degree of stenosis	727 European ancestry men, 550 European ancestry women	NA	5q31.1	C5orf56, IRF1, SLC22A5	rs201629990-GT	0.0381403	8E-7	(men)	0.363683	[0.22-0.51] % decrease	Affymetrix [532676] (imputed)	N
1590	chr5	131799431	131799431	rs201629990	32469969	Pott J	2020-05-29	PLoS One	Genome-wide analysis of carotid plaque burden suggests a role of IL5 in men.	Mean area of carotid plaque	727 European ancestry men, 550 European ancestry women	NA	5q31.1	C5orf56, IRF1, SLC22A5	rs201629990-GT	0.0381403	5E-9	(men)	0.40116	[0.27-0.53] mm2 decrease	Affymetrix [532676] (imputed)	N
1590	chr5	131799431	131799431	rs201629990	32469969	Pott J	2020-05-29	PLoS One	Genome-wide analysis of carotid plaque burden suggests a role of IL5 in men.	Mean area of carotid plaque	727 European ancestry men, 550 European ancestry women	NA	5q31.1	C5orf56, IRF1, SLC22A5	rs201629990-GT	0.0381403	1E-7		0.269019	[0.17-0.37] mm2 decrease	Affymetrix [532676] (imputed)	N
1590	chr5	131799431	131799431	rs201629990	32469969	Pott J	2020-05-29	PLoS One	Genome-wide analysis of carotid plaque burden suggests a role of IL5 in men.	Maximum stenosis	727 European ancestry men, 550 European ancestry women	NA	5q31.1	C5orf56, IRF1, SLC22A5	rs201629990-GT	0.0381403	2E-6	(men)	0.434962	[0.26-0.61] % decrease	Affymetrix [532676] (imputed)	N
1590	chr5	131799431	131799431	rs201629990	32469969	Pott J	2020-05-29	PLoS One	Genome-wide analysis of carotid plaque burden suggests a role of IL5 in men.	Carotid plaque maximum area	727 European ancestry men, 550 European ancestry women	NA	5q31.1	C5orf56, IRF1, SLC22A5	rs201629990-GT	0.0381403	2E-7		0.335857	[0.21-0.46] mm2 decrease	Affymetrix [532676] (imputed)	N
1590	chr5	131799431	131799431	rs201629990	32469969	Pott J	2020-05-29	PLoS One	Genome-wide analysis of carotid plaque burden suggests a role of IL5 in men.	Carotid plaque maximum area	727 European ancestry men, 550 European ancestry women	NA	5q31.1	C5orf56, IRF1, SLC22A5	rs201629990-GT	0.0381403	1E-8	(men)	0.506708	[0.33-0.68] mm2 decrease	Affymetrix [532676] (imputed)	N
1590	chr5	131799625	131799626	rs3749833	31959851	Olafsdottir TA	2020-01-20	Nat Commun	Eighty-eight variants highlight the role of T cell regulation and airway remodeling in asthma pathogenesis.	Asthma	16,247 European ancestry cases, 346,486 European ancestry controls, 52,942 cases, 355,713 controls	NA	5q31.1	C5orf56, IRF1, SLC22A5, IL5, RAD50, LOC553103	rs3749833-C	0.26407	1E-26		1.07787	[1.06-1.09]	Affymetrix [32463443] (imputed)	N
1590	chr5	131799625	131799626	rs3749833	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	5q31.1	NR	rs3749833-?	NR	2E-15				Affymetrix [~ 8270000] (imputed)	N
1590	chr5	131799625	131799626	rs3749833	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	5q31.1	C5orf56	rs3749833-?	NR	1E-19		1.077	[1.06-1.09]	Affymetrix [9000000] (imputed)	N
1590	chr5	131799625	131799626	rs3749833	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	5q31.1	C5orf56	rs3749833-C	NR	3E-26		1.085	[1.07-1.1]	Affymetrix [9000000] (imputed)	N
1590	chr5	131799625	131799626	rs3749833	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Respiratory diseases	approximately 459,000 European ancestry individuals	NA	5q31.1		rs3749833-?	NR	6E-24				NR [~ 8900000] (imputed)	N
1590	chr5	131799625	131799626	rs3749833	30552067	Shrine N	2018-12-11	Lancet Respir Med	Moderate-to-severe asthma in individuals of European ancestry: a genome-wide association study.	Asthma (moderate or severe)	5,135 European ancestry cases, 25,675 European ancestry controls	5,414 European ancestry cases, 21,471 European ancestry controls	5q31.1	C5orf56	rs3749833-C	0.2608	6E-14		1.14	[1.10-1.18]	Affymetrix [33771858] (imputed)	N
1590	chr5	131799625	131799626	rs3749833	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	5q31.1	C5orf56	rs3749833-C	0.3	3E-11		1.039	[1.03-1.05]	Affymetrix, Illumina [8307659] (imputed)	N
1590	chr5	131801725	131801726	rs2522056	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	5q31.1	C5orf56	rs2522056-A	0.1856	2E-10		0.02954442	[0.021-0.039] unit increase	Affymetrix [~ 2500000] (imputed)	N
1590	chr5	131801725	131801726	rs2522056	20031576	Dehghan A	2009-04-01	Circ Cardiovasc Genet	Association of novel genetic Loci with circulating fibrinogen levels: a genome-wide association study in 6 population-based cohorts.	Fibrinogen	22,096 European ancestry individuals	17,686 European ancestry female individuals	5q31.1	IRF1	rs2522056-A	0.21	1E-15		0.06	[0.04-0.08] g/L decrease	Affymetrix, Illumina [~ 2661766] (imputed)	N
1590	chr5	131801946	131801947	rs2522057	34234117	Adedokun B	2021-07-07	Nat Commun	Cross-ancestry GWAS meta-analysis identifies six breast cancer loci in African and European ancestry women.	Breast cancer (estrogen-receptor positive)	4,299 African ancestry cases, 10,193 African ancestry controls, 69,501 European ancestry cases, 105,974 European ancestry controls	NA	5q31.1		rs2522057-C	0.6	3E-7		0.96	[0.95-0.98]	Affymetrix, Illumina [NR] (imputed)	N
1590	chr5	131801946	131801947	rs2522057	34234117	Adedokun B	2021-07-07	Nat Commun	Cross-ancestry GWAS meta-analysis identifies six breast cancer loci in African and European ancestry women.	Breast cancer	9,241 African ancestry cases, 10,193 African ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	NA	5q31.1		rs2522057-C	0.6	1E-8		0.97	[0.95-0.98]	Affymetrix, Illumina [NR] (imputed)	N
1590	chr5	131801946	131801947	rs2522057	34234117	Adedokun B	2021-07-07	Nat Commun	Cross-ancestry GWAS meta-analysis identifies six breast cancer loci in African and European ancestry women.	Breast cancer	122,977 European ancestry cases, 105,974 European ancestry controls	NA	5q31.1		rs2522057-C	0.59	9E-8		0.97	[0.96-0.98]	Affymetrix, Illumina [NR] (imputed)	N
1590	chr5	131803536	131803537	rs17622517	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	5q31.1	NR	rs17622517-C	NR	3E-9		0.0262	[0.018-0.035] unit increase	Affymetrix [9000000] (imputed)	N
1590	chr5	131803536	131803537	rs17622517	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	5q31.1	C5orf56	rs17622517-C	0.081933	5E-9		0.024659894	[0.016-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
1590	chr5	131803536	131803537	rs17622517	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	5q31.1	C5orf56	rs17622517-C	0.0819609999999999	6E-9		0.025140049	[0.017-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
1590	chr5	131803536	131803537	rs17622517	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	5q31.1	C5orf56	rs17622517-C	0.081975	4E-16		0.035234626	[0.027-0.044] unit decrease	Affymetrix [93095623] (imputed)	N
1590	chr5	131803536	131803537	rs17622517	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	5q31.1	C5orf56	rs17622517-?	NR	1E-7	(subset analysis)			Illumina [130052]	N
1590	chr5	131804044	131804045	rs2522061	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	5q31.1	NR	rs2522061-G	NR	5E-9		0.029	unit increase	Affymetrix [at least 7091467] (imputed)	N
1590	chr5	131804044	131804045	rs2522061	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	5q31.1	NR	rs2522061-G	0.792	4E-8	(EA)	0.031	unit increase	Affymetrix [at least 7091467] (imputed)	N
1590	chr5	131804044	131804045	rs2522061	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	5q31.1	NR	rs2522061-G	NR	4E-11		0.034	unit increase	Affymetrix [at least 7091467] (imputed)	N
1590	chr5	131804044	131804045	rs2522061	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	5q31.1	NR	rs2522061-G	0.792	3E-10	(EA)	0.037	unit increase	Affymetrix [at least 7091467] (imputed)	N
1590	chr5	131804346	131804347	rs2248116	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	5q31.1	C5orf56, IRF1	rs2248116-C	0.414	5E-22		0.0342719	[0.027-0.041] unit increase	Illumina [13519193] (imputed)	N
1590	chr5	131804346	131804347	rs2248116	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	5q31.1	C5orf56	rs2248116-C	NR	9E-12	(women)	0.031564	[0.023-0.041] unit increase	Illumina [13520550] (imputed)	N
1590	chr5	131804346	131804347	rs2248116	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	5q31.1	C5orf56, IRF1	rs2248116-C	0.414	2E-38		0.0485949	[0.041-0.056] unit increase	Illumina [13520550] (imputed)	N
1590	chr5	131804346	131804347	rs2248116	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	5q31.1	C5orf56	rs2248116-A	0.5627	3E-95		0.07275038	[0.066-0.08] unit increase	Affymetrix [~ 2500000] (imputed)	N
1590	chr5	131804346	131804347	rs2248116	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	5q31.1	C5orf56	rs2248116-A	0.5627	2E-62		0.05873789	[0.052-0.066] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1590	chr5	131804346	131804347	rs2248116	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	5q31.1	C5orf56	rs2248116-A	0.5626	1E-77		0.06536061	[0.058-0.072] unit increase	Affymetrix [~ 2500000] (imputed)	N
1590	chr5	131804346	131804347	rs2248116	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	5q31.1	C5orf56	rs2248116-A	0.5627	3E-67		0.06102022	[0.054-0.068] unit increase	Affymetrix [~ 2500000] (imputed)	N
1590	chr5	131804346	131804347	rs2248116	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	5q31.1	C5orf56	rs2248116-A	0.5626	1E-96		0.07316622	[0.066-0.08] unit increase	Affymetrix [~ 2500000] (imputed)	N
1590	chr5	131806779	131806780	rs3846730	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	5q31.1	AC116366.6	rs3846730-T	0.236872	1E-16		0.021591863	[0.016-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1590	chr5	131807623	131807624	rs2057655	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	5q31.1	NR	rs2057655-A	0.18617499999999998	3E-20		0.00983625	[0.0077-0.0119] unit increase	Affymetrix [16582909] (imputed)	N
1590	chr5	131807623	131807624	rs2057655	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	5q31.1	NR	rs2057655-A	0.18674400000000002	2E-11		0.0108694	[0.0078-0.014] unit increase	Affymetrix [16585854] (imputed)	N
1590	chr5	131807623	131807624	rs2057655	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	5q31.1	NR	rs2057655-A	0.18617499999999998	4E-11		0.00827644	[0.0059-0.0106] unit increase	Affymetrix [16582965] (imputed)	N
1590	chr5	131807623	131807624	rs2057655	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	5q31.1	NR	rs2057655-A	0.18674400000000002	9E-7		0.00909838	[0.0055-0.0127] unit increase	Affymetrix [16585866] (imputed)	N
1590	chr5	131807623	131807624	rs2057655	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	5q31.1	NR	rs2057655-A	0.184971	3E-12		0.0277338	[0.02-0.036] unit increase	NR [19129689] (imputed)	N
1590	chr5	131807623	131807624	rs2057655	26561523	de Vries PS	2015-11-10	Hum Mol Genet	A meta-analysis of 120 246 individuals identifies 18 new loci for fibrinogen concentration.	Fibrinogen levels	120,246 European ancestry individuals	NA	5q31.1	C5orf56	rs2057655-A	0.21	2E-73		0.0203	NR unit decrease	Affymetrix, Illumina [~ 10700000] (imputed)	N
1590	chr5	131808667	131808668	rs2548992	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (adrenergics, inhalants)	28,880 European ancestry cases, 147,565 European ancestry controls	NA	5q31.1	AC116366.6	rs2548992-A	0.268078	2E-15		0.08078751	[0.061-0.101] unit increase	Affymetrix [7288503] (imputed)	N
1590	chr5	131808667	131808668	rs2548992	29785011	Zhu Z	2018-05-21	Nat Genet	A genome-wide cross-trait analysis from UK Biobank highlights the shared genetic architecture of asthma and allergic diseases.	Asthma or allergic disease (pleiotropy)	14,085 European asthma cases, 25,685 European ancestry allergic diseases cases, 76,768 European ancestry controls	NA	5q31.1	C5orf56, IRF1, LOC553103, MIR3936, P4HA2, PDLIM4, SLC22A4, SLC22A5	rs2548992-?	NR	5E-10		1.1		NR [74888535] (imputed)	N
1590	chr5	131809304	131809305	rs2057656	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (adrenergics, inhalants)	28,880 European ancestry cases, 147,565 European ancestry controls, 5,880 East Asian ancestry cases, 172,846 East Asian ancestry controls	NA	5q31.1		rs2057656-C	NR	4E-18		0.0794	[0.061-0.097] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1590	chr5	131809304	131809305	rs2057656	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	5q31.1	NR	rs2057656-?	NR	1E-19				Affymetrix [~ 8270000] (imputed)	N
1590	chr5	131809315	131809316	rs2057657	33385171	Hagg S	2020-12-31	Hum Genet	Deciphering the genetic and epidemiological landscape of mitochondrial DNA abundance.	Mitochondrial DNA levels	295,150 European ancestry individuals	NA	5q31.1	NR	rs2057657-G	0.2256	4E-9		0.0179181	[0.012-0.024] unit decrease	Affymetrix [3505788] (imputed)	N
1590	chr5	131809757	131809761	rs140316257	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	5q31.1	C5orf56	rs140316257-T	0.7332	7E-11		0.02625749	[0.018-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
1590	chr5	131811181	131811182	rs11741255	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	5q31.1	NR	rs11741255-A	0.425227	1E-11		0.014157	[0.01-0.018] SD unit decrease	Affymetrix, Illumina [50036608] (imputed)	N
1590	chr5	131811181	131811182	rs11741255	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	5q31.1	C5orf56	rs11741255-G	0.579	6E-13	(men)	0.0325161	[0.024-0.041] unit decrease	Illumina [13520550] (imputed)	N
1590	chr5	131811181	131811182	rs11741255	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	5q31.1	C5orf56	rs11741255-G	0.579	3E-23		0.0322474	[0.026-0.039] unit decrease	Illumina [13520550] (imputed)	N
1590	chr5	131811181	131811182	rs11741255	26301688	Li YR	2015-08-24	Nat Med	Meta-analysis of shared genetic architecture across ten pediatric autoimmune diseases.	Pediatric autoimmune diseases	97 European ancestry thyroiditis cases, 107 European ancestry ankylosing spondylitis cases, 100 European ancestry psoriasis cases, 173 European ancestry celiac disease cases, 254 European ancestry systemic lupus erythematosus cases, 308 European ancestry common variable inmunodeficiency cases, 865 European ancestry ulcerative colitis cases, 1,086 European ancestry Type 1 diabetes cases, 1,123  European ancestry juvenile idiopathic arthritis cases, 1,922  European ancestry Crohn's disease cases, 10,718 European ancestry controls	NA	5q31.1	IL5	rs11741255-A	0.42	2E-9				Illumina [7347414] (imputed)	N
1590	chr5	131812897	131812897	rs112125244	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	5q31.1	AC116366.6	rs112125244-TTTTG	0.284783	2E-10		0.018620627	[0.013-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1590	chr5	131813203	131813204	rs13164856	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	5q31.1	NR	rs13164856-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
1590	chr5	131813203	131813204	rs13164856	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	5q31.1	NR	rs13164856-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
1590	chr5	131813203	131813204	rs13164856	30566500	Day F	2018-12-19	PLoS Genet	Large-scale genome-wide meta-analysis of polycystic ovary syndrome suggests shared genetic architecture for different diagnosis criteria.	Polycystic ovary syndrome	10,074 European ancestry cases, 103,164 European ancestry controls	NA	5q31.1	IRF1, RAD50	rs13164856-T	0.73	1E-10		0.1235	[0.086-0.161] unit increase	Illumina [> 10000000] (imputed)	N
1590	chr5	131813203	131813204	rs13164856	26416764	Day FR	2015-09-29	Nat Commun	Causal mechanisms and balancing selection inferred from genetic associations with polycystic ovary syndrome.	Polycystic ovary syndrome	5,184 European ancestry cases, 82,759 European ancestry controls	374 European ancestry cases, 92,681 European ancestry controls, 1,671 cases, 6,205 controls	5q31.1	RAD50	rs13164856-T	0.73	4E-9		1.13	[1.09-1.18]	Illumina [~ 9000000] (imputed)	N
1590	chr5	131813349	131813350	rs13165038	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	5q31.1	NR	rs13165038-C	0.3259	5E-9		1.038	[1.026-1.051]	Affymetrix [15688218] (imputed)	N
1590	chr5	131814090	131814091	rs7719499	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	5q31.1		rs7719499-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1590	chr5	131815003	131815004	rs7734334	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	5q31.1	C5orf56, IRF1	rs7734334-C		9E-10		0.154	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1590	chr5	131817911	131817912	rs796820687	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	5q31.1	IRF1	rs796820687-A	0.361847	5E-24		0.024638496	[0.02-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1590	chr5	131817911	131817912	rs796820687	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	5q31.1	IRF1	rs796820687-A	0.3644	2E-12		0.02812072	[0.02-0.036] unit increase	Affymetrix [~ 2500000] (imputed)	N
1590	chr5	131819920	131819921	rs2070729	22139419	Gieger C	2011-11-30	Nature	New gene functions in megakaryopoiesis and platelet formation.	Platelet count	38,891 European ancestry individuals, 1,661 Val Borbera (founder/genetic isolate) individuals, 521 Carlantino (founder/genetic isolate) individuals, 1,198 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,213 South Tyrolean (founder/genetic isolate) individuals, 890 Sorbian (founder/genetic isolate) individuals, 4,292 Sardinian (founder/genetic isolate) individuals	Up to 16,949 European ancestry individuals, 854 Cliento (founder/genetic isolate) individuals, 1,035 Talana (founder/genetic isolate) individuals	5q31.1	IRF1	rs2070729-A	NR	1E-10		2.394	[1.67-3.12] 10^9/l increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1590	chr5	131820996	131820997	rs17622656	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	5q31.1	IRF1	rs17622656-A	0.385926	8E-10		0.014150426	[0.0096-0.0187] unit increase	Affymetrix [93095623] (imputed)	N
1590	chr5	131820996	131820997	rs17622656	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	5q31.1	IRF1	rs17622656-A	0.385926	4E-9		0.013545541	[0.009-0.0181] unit increase	Affymetrix [93095623] (imputed)	N
1590	chr5	131821557	131821558	rs10053046	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	5q31.1		rs10053046-G	NR	5E-14		0.0164	[0.012-0.021] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
1590	chr5	131823186	131823187	rs2070723	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	5q31.1		rs2070723-G	NR	5E-36		0.0254	[0.021-0.029] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1590	chr5	131824485	131824486	rs2070722	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	5q31.1	IRF1	rs2070722-C	0.338899	7E-19		0.022508116	[0.018-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1590	chr5	131824485	131824486	rs2070722	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q31.1	NR	rs2070722-C	0.34566	3E-54				Affymetrix, Illumina [24588908] (imputed)	N
1590	chr5	131824485	131824486	rs2070722	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	5q31.1	NR	rs2070722-C	0.3373	3E-51		0.029417	[0.026-0.033] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1590	chr5	131829296	131829297	rs2549003	24824216	Myers RA	2014-05-13	Hum Mol Genet	Genome-wide interaction studies reveal sex-specific asthma risk alleles.	Asthma (sex interaction)	1,052 European ancestry male cases, 1,019 European ancestry female cases, 709 European ancestry male controls, 826 European ancestry female controls, 675 African American/African Caribbean male cases, 837 African American/African Caribbean female cases, 577 African American/African Caribbean male controls, 926 African American/African Caribbean female controls, 926 Latino male cases, 710 Latino female cases, 410 Latino male controls, 382 Latino female controls	NA	5q31.1	IRF1, SLC22A4	rs2549003-G	0.39	9E-7	(European, male)	1.33	[1.18-1.49]	Affymetrix, Illumina [~ 2100000] (imputed)	N
1590	chr5	131829577	131829578	rs2549002	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	5q31.1	IRF1	rs2549002-A	0.682	2E-10		0.905	[0.87-0.94]	Illumina [11270530] (imputed)	N
1590	chr5	131832513	131832514	rs2548998	32024964	Gonzalez-Serna D	2020-02-05	Sci Rep	A cross-disease meta-GWAS identifies four new susceptibility loci shared between systemic sclerosis and Crohn's disease.	Crohn's disease or systemic sclerosis	2,281 European ancestry systemic sclerosis cases, 1,988 European ancestry Crohn's disease cases, 7,388 European ancestry controls	3,453 European ancestry systemic sclerosis cases, 2,600 European ancestry Crohn's disease cases, 7,180 European ancestry controls	5q31.1	IRF1	rs2548998-G		2E-11			[NR]	Illumina [5994231] (imputed)	N
1590	chr5	131833598	131833599	rs736801	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	5q31.1	NR	rs736801-T	0.3642	8E-8	(EA)	0.0349	[0.022-0.048] unit increase	Illumina [~ 11800000] (imputed)	N
1590	chr5	131833598	131833599	rs736801	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	5q31.1	Intergenic	rs736801-T	NR	2E-13		0.0400189	[0.029-0.051] unit decrease	Illumina [13520550] (imputed)	N
1590	chr5	131839617	131839618	rs4705952	21300955	Dehghan A	2011-02-07	Circulation	Meta-analysis of genome-wide association studies in >80 000 subjects identifies multiple loci for C-reactive protein levels.	C-reactive protein levels	63,678 European ancestry individuals 1,792 Erasmus Rucphen individuals, 715 Orcadian individuals	16,540 European ancestry individuals	5q31.1	IRF1	rs4705952-G	NR	1E-8		0.042	[0.03-0.05] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1590	chr5	131842719	131842719	rs141860517	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	5q31.1		rs141860517-CAATAAATA	0.640327	8E-13		0.01739731	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1591	chr5	131862976	131862977	rs4143832	19198610	Gudbjartsson DF	2009-02-08	Nat Genet	Sequence variants affecting eosinophil numbers associate with asthma and myocardial infarction.	Eosinophil counts	9,392 European ancestry individuals	12,118 European ancestry individuals, 5,212 East Asian ancestry individuals	5q31.1	IL5	rs4143832-C	0.16	1E-10	(EA)	7.1	[4.9-9.2] % standard unit increase	Illumina [312179]	N
1591	chr5	131864034	131864035	rs139939228	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	5q31.1		rs139939228-C	0.00469600000000003	2E-14		0.13376875	[0.1-0.168] unit increase	Affymetrix [93095623] (imputed)	N
1591	chr5	131864034	131864035	rs139939228	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	5q31.1		rs139939228-C	0.00470099999999996	8E-15		0.13528766	[0.1-0.17] unit increase	Affymetrix [93095623] (imputed)	N
1591	chr5	131864034	131864035	rs139939228	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	5q31.1	intergenic	rs139939228-C	0.0044	2E-17		0.2415264	[0.19-0.3] unit increase	Affymetrix [~ 2500000] (imputed)	N
1591	chr5	131864034	131864035	rs139939228	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	5q31.1	intergenic	rs139939228-C	0.0044	2E-16		0.2338179	[0.18-0.29] unit increase	Affymetrix [~ 2500000] (imputed)	N
1591	chr5	131864034	131864035	rs139939228	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	5q31.1	intergenic	rs139939228-C	0.0044	3E-17		0.2393178	[0.18-0.29] unit increase	Affymetrix [~ 2500000] (imputed)	N
1591	chr5	131865790	131865791	rs4705959	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	5q31.1	AFF4, CCNI2, GDF9, IL4, IL5, IL13, KIF3A, LEAP2, RAD50, SEPT8, SHROOM1, SOWAHA, UQCRQ	rs4705959-T	0.742622	2E-9		1.0436985	[1.03-1.06]	Affymetrix [8274727] (imputed)	N
1591	chr5	131879915	131879916	rs2069812	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Asthma	8,216 Japanese ancestry cases, 201,592 Japanese ancestry controls	NA	5q31.1		rs2069812-G	NR	6E-7		1.0902325	[1.05389948653548-1.12781796122438]	Illumina [8919992] (imputed)	N
1591	chr5	131884893	131884894	rs2078387	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	5q31.1	IL5, RAD50	rs2078387-C	NR	5E-8		0.128642	[0.082-0.175] unit decrease	Illumina [at least 950000] (imputed)	N
1591	chr5	131884893	131884894	rs2078387	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Eosinophil counts	62,076 Japanese ancestry individuals	NA	5q31.1	IL5, RAD50	rs2078387-?	NR	9E-19		0.06222	[0.048-0.076] unit decrease novel	Illumina [6108953] (imputed)	N
1591	chr5	131885239	131885240	rs12652920	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	5q31.1	NR	rs12652920-?	NR	1E-19				Affymetrix [~ 8270000] (imputed)	N
1591	chr5	131887985	131887986	rs1986009	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	5q31.1	IL5	rs1986009-A	0.187752	8E-148		0.082144655	[0.076-0.088] unit increase	Affymetrix [93095623] (imputed)	N
1591	chr5	131887985	131887986	rs1986009	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	5q31.1	NR	rs1986009-?	NR	5E-10	(conditional)			Affymetrix [15688218] (imputed)	N
1591	chr5	131887985	131887986	rs1986009	30552067	Shrine N	2018-12-11	Lancet Respir Med	Moderate-to-severe asthma in individuals of European ancestry: a genome-wide association study.	Asthma (moderate or severe)	5,135 European ancestry cases, 25,675 European ancestry controls	5,414 European ancestry cases, 21,471 European ancestry controls	5q31.1	RAD50	rs1986009-A	0.1871	2E-15		1.17	[1.13-1.22]	Affymetrix [33771858] (imputed)	N
1591	chr5	131888668	131888669	rs114068984	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	5q31.1		rs114068984-G	0.979	2E-16				Affymetrix [10369434] (imputed)	N
1591	chr5	131890470	131890471	rs2706334	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	5q31.1		rs2706334-T	NR	2E-159		0.0551	[0.051-0.059] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
1591	chr5	131901224	131901225	rs2244012	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Asthma	28,399 European ancestry cases, 128,843 European ancestry controls	NA	5q31.1	RAD50	rs2244012-?	NR	2E-16		1.102	[1.077-1.128]	Illumina [13747813] (imputed)	N
1591	chr5	131901224	131901225	rs2244012	20159242	Li X	2010-02-01	J Allergy Clin Immunol	Genome-wide association study of asthma identifies RAD50-IL13 and HLA-DR/DQ regions.	Asthma	607 European ancestry cases, 3,294 European ancestry controls	NA	5q31.1	RAD50	rs2244012-C	0.21	3E-7		1.64	[1.36-1.97]	Illumina [292443]	N
1591	chr5	131903927	131903928	rs2706345	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	5q31.1	RAD50	rs2706345-A	0.191766	2E-140		0.07800236	[0.072-0.084] unit increase	Affymetrix [93095623] (imputed)	N
1591	chr5	131903927	131903928	rs2706345	28203683	Heit JA	2017-02-16	Thromb Haemost	Identification of unique venous thromboembolism-susceptibility variants in African-Americans.	Venous thromboembolism adjusted for sickle cell variant rs77121243-T	393 African American cases, 4,941 African American controls.	NR	5q31.1	RAD50	rs2706345-?	0.57	9E-6		1.459854		Affymetrix, Illumina [14074516] (imputed)	N
1591	chr5	131903927	131903928	rs2706345	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	5q31.1	RAD50	rs2706345-A	0.1923	1E-63		0.0760465	[0.067-0.085] unit increase	Affymetrix [~ 2500000] (imputed)	N
1591	chr5	131903927	131903928	rs2706345	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	5q31.1	RAD50	rs2706345-A	0.1924	2E-65		0.07707069	[0.068-0.086] unit increase	Affymetrix [~ 2500000] (imputed)	N
1591	chr5	131903927	131903928	rs2706345	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	5q31.1	RAD50	rs2706345-A	0.1923	3E-63		0.07600837	[0.067-0.085] unit increase	Affymetrix [~ 2500000] (imputed)	N
1591	chr5	131903927	131903928	rs2706345	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	5q31.1	RAD50	rs2706345-A	0.1923	4E-70		0.0799056	[0.071-0.089] unit increase	Affymetrix [~ 2500000] (imputed)	N
1591	chr5	131912558	131912562	rs111783219	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	93,063 East Asian ancestry individuals	NA	5q31.1		rs111783219-C	0.207976	3E-25		0.0566936	[0.046-0.067] unit increase	Illumina [13470073] (imputed)	N
1591	chr5	131915278	131915279	rs75639632	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	5q31.1	NR	rs75639632-?	NR	2E-12				Affymetrix [~ 8270000] (imputed)	N
1591	chr5	131916939	131916940	rs2299012	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma onset (childhood vs adult)	13,962 European ancestry childhood onset cases, 14,873 European ancestry adult onset cases	31,002 European ancestry childhood onset cases, 16,297 European ancestry adult onset cases	5q31.1	RAD50	rs2299012-C	0.19	7E-9		1.073	[1.05-1.1]	Affymetrix [9000000] (imputed)	N
1591	chr5	131916939	131916940	rs2299012	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	5q31.1	RAD50	rs2299012-?	NR	1E-49		1.141	[1.12-1.16]	Affymetrix [9000000] (imputed)	N
1591	chr5	131916939	131916940	rs2299012	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	5q31.1	RAD50	rs2299012-C	NR	7E-32		1.106	[1.09-1.12]	Affymetrix [9000000] (imputed)	N
1591	chr5	131925186	131925187	rs2706362	29785011	Zhu Z	2018-05-21	Nat Genet	A genome-wide cross-trait analysis from UK Biobank highlights the shared genetic architecture of asthma and allergic diseases.	Asthma	14,085 European ancestry cases, 76,768 European ancestry controls	10,365 cases, 16,110 controls	5q31.1	IL13	rs2706362-?	NR	1E-11		0.109751	[0.078-0.142] unit increase	Affymetrix [74888535] (imputed)	N
1591	chr5	131948525	131948526	rs2245460	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	86,890 East Asian ancestry individuals	NA	5q31.1	NR	rs2245460-T	0.791251	7E-29		0.06599	[0.054-0.078] SD units decrease	Affymetrix, Illumina [16279099] (imputed)	N
1591	chr5	131948799	131948800	rs749891445	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	5q31.1	RAD50	rs749891445-T	0.00214199999999998	2E-43		0.3627168	[0.31-0.41] unit increase	Affymetrix [93095623] (imputed)	N
1591	chr5	131948799	131948800	rs749891445	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	5q31.1	RAD50	rs749891445-T	0.002139	8E-44		0.3654107	[0.31-0.42] unit increase	Affymetrix [93095623] (imputed)	N
1591	chr5	131950224	131950225	rs75765453	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	5q31.1		rs75765453-?	NR	5E-66				NR [~ 8900000] (imputed)	N
1591	chr5	131952221	131952222	rs6596086	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Inflammatory skin disease	2,079 European ancestry atopic dermatitis cases, 4,212 European ancestry psoriasis cases, 11,899 European ancestry controls	NA	5q31.1	RAD50	rs6596086-?	NR	2E-18	(Opposed)			Affymetrix, Illumina [~ 5200000]	N
1591	chr5	131952397	131952398	rs6894017	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	5q31.1	NR	rs6894017-?	NR	3E-27				Affymetrix [~ 8270000] (imputed)	N
1591	chr5	131953065	131953066	rs2106984	34506852	Chang X	2021-09-07	J Allergy Clin Immunol	A genome-wide association meta-analysis identifies new Eosinophilic esophagitis loci.	Eosinophilic esophagitis	1,930 European ancestry cases, 13,634 European ancestry controls	NA	5q31.1	RAD50	rs2106984-A	0.212	4E-8		1.26	[1.16-1.37]	Illumina [11310926] (imputed)	N
1591	chr5	131953509	131953510	rs17772583	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	5q31.1	NR	rs17772583-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
1591	chr5	131955527	131955528	rs11954099	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	5q31.1	RAD50	rs11954099-C	NR	2E-10		0.0396282	[0.027-0.052] unit decrease	Illumina [13520550] (imputed)	N
1591	chr5	131955576	131955577	rs9687749	30013184	Waage J	2018-07-16	Nat Genet	Genome-wide association and HLA fine-mapping studies identify risk loci and genetic pathways underlying allergic rhinitis.	Allergic rhinitis	59,762 European and unknown ancestry cases, 152,358 European and unknown ancestry controls	60,720 European ancestry cases, 618,527 European ancestry controls	5q31.1	IL13, RAD50	rs9687749-T	0.4405	2E-9		1.06	[1.04-1.09]	Affymetrix, Illumina, Perlegen [16531985] (imputed)	N
1591	chr5	131955596	131955597	rs10479009	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	5q31.1	RAD50	rs10479009-G	0.2097	2E-9		0.02746763	[0.018-0.036] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1591	chr5	131955817	131955818	rs60156285	31959851	Olafsdottir TA	2020-01-20	Nat Commun	Eighty-eight variants highlight the role of T cell regulation and airway remodeling in asthma pathogenesis.	Asthma	16,247 European ancestry cases, 346,486 European ancestry controls, 52,942 cases, 355,713 controls	NA	5q31.1	RAD50, IL13, IL4, IL5, KIF3A, CCNI2	rs60156285-T	0.18091	9E-24		1.08564	[1.07-1.10]	Affymetrix [32463443] (imputed)	N
1591	chr5	131967539	131967540	rs62385260	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	5q31.1	RAD50, AC004041.2	rs62385260-A	0.187906	3E-19		0.02538517	[0.02-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
1591	chr5	131969873	131969874	rs6871536	24241537	Bonnelykke K	2013-11-17	Nat Genet	A genome-wide association study identifies CDHR3 as a susceptibility locus for early childhood asthma with severe exacerbations.	Asthma (childhood onset)	1,173 European ancestry cases, 2,511 European ancestry controls	395 European ancestry cases, 2,663 European ancestry controls, 63 Turkish, Surinamese, Dutch Antillean, Moroccan, Cape Verdian and other ancestry cases, 917 Turkish, Surinamese, Dutch Antillean, Moroccan, Cape Verdian and other ancestry controls, 6,783 cases, 7,720 controls	5q31.1	RAD50	rs6871536-C	0.22	8E-7		1.17	[1.10-1.25]	Affymetrix, Illumina [124514]	N
1591	chr5	131973176	131973177	rs2040704	27611488	Almoguera B	2016-09-09	Am J Respir Crit Care Med	Identification of Four Novel Loci in Asthma in European American and African American Populations.	Asthma	819 African American non-allergic asthma cases, 2,218 African American allergic asthma cases 4,360 African American controls, 808 European American non-allergic asthma cases, 1,464 European American allergic asthma cases, 11,975 European American controls	NA	5q31.1	RAD50	rs2040704-?		2E-7	(AA)	0.195	[0.12-0.27] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1591	chr5	131973176	131973177	rs2040704	18846228	Weidinger S	2008-08-22	PLoS Genet	Genome-wide scan on total serum IgE levels identifies FCER1A as novel susceptibility locus.	IgE levels	1,530 European ancesrty individuals	9,769 European ancestry individuals	5q31.1	RAD50	rs2040704-?	0.23	4E-8		13.9	[NR] % increase	Affymetrix [353569]	N
1591	chr5	131984834	131984835	rs60153262	34785669	Grosche S	2021-11-16	Nat Commun	Rare variant analysis in eczema identifies exonic variants in DUSP1, NOTCH4 and SLC9A4.	Eczema	20,016 European ancestry cases, 380,433 European ancestry controls	NA	5q31.1		rs60153262-T	0.0412	8E-9		1.17		Affymetrix, Illumina [9397031] (imputed)	N
1591	chr5	131984834	131984835	rs60153262	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	5q31.1	NR	rs60153262-?	NR	7E-12				Affymetrix [~ 8270000] (imputed)	N
1591	chr5	131989135	131989136	rs3091307	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	5q31.1	RAD50, IL13	rs3091307-G	0.2	4E-21		1.062	[1.05-1.07]	Affymetrix, Illumina [8307659] (imputed)	N
1591	chr5	131989135	131989136	rs3091307	25865352	Schaarschmidt H	2015-04-10	J Allergy Clin Immunol	A genome-wide association study reveals 2 new susceptibility loci for atopic dermatitis.	Atopic dermatitis	870 European ancestry cases, 5,293 European ancestry controls	1,383  European ancestry cases, 1,728 European ancestry controls	5q31.1	RAD50	rs3091307-A	0.228	4E-7		1.24	[NR]	Affymetrix [1623390] (imputed)	N
1592	chr5	131991084	131991085	rs12188917	26482879	Paternoster L	2015-10-19	Nat Genet	Multi-ancestry genome-wide association study of 21,000 cases and 95,000 controls identifies new risk loci for atopic dermatitis.	Atopic dermatitis	18,900 European ancestry cases, 1,472 Japanese ancestry cases, 422 African American cases, 300 Latino cases, 305 cases, 84,166 European ancestry controls, 7,966 Japanese ancestry controls, 844 African American controls, 1,592 Latino controls, 896 controls	30,588 European ancestry cases, 459 African American cases, 1,012 Chinese ancestry cases, 226,537 European ancestry controls, 729 African American controls, 1,362 Chinese ancestry controls	5q31.1	RAD50, IL13	rs12188917-C	0.21	4E-17	(EA, fixed effects)	1.14	[1.10-1.17]	Illumina [15539996] (imputed)	N
1592	chr5	131991655	131991656	rs67006560	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	5q31.1	AC004041.2	rs67006560-T	0.1717	5E-55		0.07398101	[0.065-0.083] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1592	chr5	131991880	131991881	rs115008099	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	5q31.1	NR	rs115008099-?	NR	2E-15				Affymetrix [~ 8270000] (imputed)	N
1592	chr5	131991880	131991881	rs115008099	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	5q31.1	IL4, IL5, IL13, KIF3A, RAD50	rs115008099-T	0.168093	6E-32		1.1028713	[1.09-1.12]	Affymetrix [8274727] (imputed)	N
1592	chr5	131991880	131991881	rs115008099	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (adrenergics, inhalants)	28,880 European ancestry cases, 147,565 European ancestry controls	NA	5q31.1	AC004041.2	rs115008099-T	0.164643	1E-17		0.10557524	[0.081-0.13] unit increase	Affymetrix [7288503] (imputed)	N
1592	chr5	131991880	131991881	rs115008099	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Respiratory diseases	approximately 459,000 European ancestry individuals	NA	5q31.1		rs115008099-?	NR	6E-31				NR [~ 8900000] (imputed)	N
1592	chr5	131992408	131992409	rs1881457	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (glucocorticoids)	17,352 European ancestry cases, 188,348 European ancestry controls, 13,102 East Asian ancestry cases, 165,624 East Asian ancestry controls	NA	5q31.1		rs1881457-C	NR	1E-9		0.0645	[0.044-0.085] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1592	chr5	131995842	131995843	rs1295686	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Asthma	13,015 East Asian ancestry cases, 162,933 East Asian ancestry controls	NA	5q31.1		rs1295686-C	0.695345266	3E-8		0.081391685	[0.053-0.11] unit decrease	Illumina [13429513] (imputed)	N
1592	chr5	131995842	131995843	rs1295686	34536413	Daya M	2021-09-15	J Allergy Clin Immunol	Multi-ethnic genome-wide and HLA association study of total serum IgE.	IgE levels	5,008 African American individuals, 12,908 European ancestry individuals, 3,985 Hispanic individuals	NA	5q31.1		rs1295686-C	0.64	2E-13				Affymetrix, Illumina [NR] (imputed)	N
1592	chr5	131995842	131995843	rs1295686	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Atopic dermatitis	2,385 Japanese ancestry cases, 209,651 Japanese ancestry controls	NA	5q31.1		rs1295686-C	0.694974117	1E-9		0.8133829	[0.760806418-0.869592786]	Illumina [8919992] (imputed)	N
1592	chr5	131995842	131995843	rs1295686	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Allergy	66,973 European ancestry cases, 113,768 European ancestry controls	NA	5q31.1	IL13	rs1295686-?	NR	6E-10		1.061	[1.041-1.080]	Illumina [12845910] (imputed)	N
1592	chr5	131995842	131995843	rs1295686	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Atopic dermatitis	2,079 European ancestry cases, 3,867 European ancestry controls	NA	5q31.1	RAD50, IL13, IL4, KIF3A	rs1295686-T	NR	5E-9		1.347	[1.28-1.418]	Affymetrix, Illumina, Perlegen [up to 5493100] (imputed)	N
1592	chr5	131995842	131995843	rs1295686	24241537	Bonnelykke K	2013-11-17	Nat Genet	A genome-wide association study identifies CDHR3 as a susceptibility locus for early childhood asthma with severe exacerbations.	Asthma (childhood onset)	1,173 European ancestry cases, 2,511 European ancestry controls	395 European ancestry cases, 2,663 European ancestry controls, 63 Turkish, Surinamese, Dutch Antillean, Moroccan, Cape Verdian and other ancestry cases, 917 Turkish, Surinamese, Dutch Antillean, Moroccan, Cape Verdian and other ancestry controls, 6,783 cases, 7,720 controls	5q31.1	IL13	rs1295686-T	NR	2E-6		1.31	[1.17-1.48]	Affymetrix, Illumina [124514]	N
1592	chr5	131995842	131995843	rs1295686	23886662	Weidinger S	2013-07-25	Hum Mol Genet	A genome-wide association study of atopic dermatitis identifies loci with overlapping effects on asthma and psoriasis.	Atopic dermatitis	1563 European ancestry cases, 4,054 European ancestry controls	2,286 European ancestry cases, 3,160 European ancestry controls	5q31.1	IL13, RAD50	rs1295686-A	NR	2E-17		1.383	[1.283-1.49]	Illumina [2406139] (imputed)	N
1592	chr5	131995842	131995843	rs1295686	23042114	Hirota T	2012-10-07	Nat Genet	Genome-wide association study identifies eight new susceptibility loci for atopic dermatitis in the Japanese population.	Atopic dermatitis	1,472 Japanese ancestry cases, 7,971 Japanese ancestry controls	1,856 Japanese ancestry cases, 7,021 Japanese ancestry controls	5q31.1	KIF3A, IL13	rs1295686-T	0.30	2E-6		1.22	[NR]	Illumina [606164]	N
1592	chr5	131995842	131995843	rs1295686	20860503	Moffatt MF	2010-09-23	N Engl J Med	A large-scale, consortium-based genomewide association study of asthma.	Asthma	10,365 cases, 16,110 controls	NA	5q31.1	IL13	rs1295686-T	0.20	1E-7		1.15	[1.09-1.20]	Illumina [582892]	N
1592	chr5	131995963	131995964	rs20541	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atopic dermatitis	6,224 European ancestry cases, 475,075 European ancestry controls, 4,296 East Asian ancestry cases, 163,807 East Asian ancestry controls	NA	5q31.1		rs20541-G	NR	1E-18		0.1451	[0.11-0.18] unit decrease	Affymetrix, Illumina [25843389] (imputed)	N
1592	chr5	131995963	131995964	rs20541	34116867	Tanaka N	2021-06-02	J Allergy Clin Immunol	Eight novel susceptibility loci and putative causal variants in atopic dermatitis.	Atopic dermatitis	2,597 Japanese ancestry cases, 110,504 Japanese ancestry controls, 25,685 European ancestry cases, 76,768 European ancestry controls	NA	5q31.1		rs20541-?	NR	7E-15		0.91	[0.89-0.93]	Illumina [5170515] (imputed)	N
1592	chr5	131995963	131995964	rs20541	33328473	Ahluwalia TS	2020-12-16	Nat Commun	FUT2-ABO epistasis increases the risk of early childhood asthma and Streptococcus pneumoniae respiratory illnesses.	Childhood asthma with severe exacerbations	2,866 European ancestry cases,  65,415 European ancestry controls	NA	5q31.1	IL13	rs20541-A	NR	1E-8		1.21	[1.13-1.29]	Illumina [up to 525976] (imputed)	N
1592	chr5	131995963	131995964	rs20541	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	5q31.1	IL13	rs20541-G	0.819349	7E-9		0.017205536	[0.011-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1592	chr5	131995963	131995964	rs20541	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	5q31.1	NR	rs20541-?	NR	1E-21				Affymetrix [~ 8270000] (imputed)	N
1592	chr5	131995963	131995964	rs20541	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	5q31.1	NR	rs20541-A	0.1799	5E-13		1.057	[1.041-1.072]	Affymetrix [15688218] (imputed)	N
1592	chr5	131995963	131995964	rs20541	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Eczema	7,884 European ancestry cases, 239,773 European ancestry controls	21,000 cases, 96,000 controls	5q31.1	IL33	rs20541-A	0.2945	2E-14		1.174	[1.128-1.221]	Affymetrix [15688218] (imputed)	N
1592	chr5	131995963	131995964	rs20541	30013184	Waage J	2018-07-16	Nat Genet	Genome-wide association and HLA fine-mapping studies identify risk loci and genetic pathways underlying allergic rhinitis.	Allergic sensitization	8,040 European ancestry cases, 16,441 European ancestry controls	NA	5q31.1	IL13	rs20541-A	0.24	5E-7		1.1363636	[1.09-1.19]	Affymetrix, Illumina [16531985] (imputed)	N
1592	chr5	131995963	131995964	rs20541	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls, 2,149 African ancestry cases, 6,055 African ancestry controls, 1,239 Japanese ancestry cases, 3,976 Japanese ancestry controls, 606 Latino cases, 792 Latino controls	NA	5q31.1	IL13, RAD50, IL4	rs20541-A	0.20999999999999996	5E-16		1.1235955	[1.09-1.15]	Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
1592	chr5	131995963	131995964	rs20541	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls	NA	5q31.1	IL13, RAD50, IL4	rs20541-G	0.79	1E-14		0.12	[0.081-0.159] unit decrease	Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
1592	chr5	131995963	131995964	rs20541	26626624	Stuart PE	2015-11-28	Am J Hum Genet	Genome-wide Association Analysis of Psoriatic Arthritis and Cutaneous Psoriasis Reveals Differences in Their Genetic Architecture.	Cutaneous psoriasis	1,363 European ancestry cases, 4,934 European ancestry controls	up to 2,969 European ancestry cases, up to European ancestry 14,384 controls	5q31.1	IL13	rs20541-G	NR	3E-8		1.237	NR	Illumina [11532644] (imputed)	N
1592	chr5	131995963	131995964	rs20541	25903422	Yin X	2015-04-23	Nat Commun	Genome-wide meta-analysis identifies multiple novel associations and ethnic heterogeneity of psoriasis susceptibility.	Psoriasis	3,496 European ancestry cases, 5,186 European ancestry controls, 1,588 Chinese ancestry cases, 3,546 Chinese ancestry controls	5,134 European ancestry cases, 5,633 European ancestry controls, 5,151 Chinese ancestry cases, 5,152 Chinese ancestry controls	5q31.1	IL13	rs20541-G	0.79	5E-9		1.14	[1.09-1.19]	Illumina [up to 4778154] (imputed)	N
1592	chr5	131995963	131995964	rs20541	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Psoriasis	4,212 European ancestry cases, 8,032 European ancestry controls	NA	5q31.1	IL13, IL4	rs20541-A	NR	5E-6		1.1890606	[1.14-1.23]	Affymetrix, Illumina, Perlegen [up to 5493100] (imputed)	N
1592	chr5	131995963	131995964	rs20541	23817569	Hinds DA	2013-06-30	Nat Genet	A genome-wide association meta-analysis of self-reported allergy identifies shared and allergy-specific susceptibility loci.	Self-reported allergy	53,862 European ancestry individuals	NA	5q31.1	intergenic	rs20541-A	0.2019	1E-6		0.0724	[0.043-0.101] unit increase	Illumina [2400000] (imputed)	N
1592	chr5	131995963	131995964	rs20541	22286212	Urayama KY	2012-01-27	J Natl Cancer Inst	Genome-wide association study of classical Hodgkin lymphoma and Epstein-Barr virus status-defined subgroups.	Hodgkin's lymphoma	1,200 European ancestry cases, 6,417 European ancestry controls	563 European ancestry cases, 613 European ancestry controls	5q31.1	IL13	rs20541-?	NR	1E-8	(EBV-negative cHL)	1.47	[1.29-1.68]	Illumina [502514]	N
1592	chr5	131995963	131995964	rs20541	22075330	Granada M	2011-11-08	J Allergy Clin Immunol	A genome-wide association study of plasma total IgE concentrations in the Framingham Heart Study.	IgE levels	6,819 European ancestry individuals	7,809 European ancestry indivduals	5q31.1	IL13	rs20541-A	NR	3E-18		0.08	[NR] unit increase	Affymetrix [2540223] (imputed)	N
1592	chr5	131995963	131995964	rs20541	19169254	Nair RP	2009-01-25	Nat Genet	Genome-wide scan reveals association of psoriasis with IL-23 and NF-kappaB pathways.	Psoriasis	1,359 European ancestry cases, 1,400 European ancestry controls	5,048 European ancestry cases, 5,041 European ancestry controls	5q31.1	IL13	rs20541-G	0.79	5E-15		1.27	[NR]	Perlegen [~ 2500000] (imputed)	N
1592	chr5	131996444	131996445	rs1295685	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pediatric asthma	27,712 European ancestry cases, 411,131 European ancestry controls, 547 East Asian ancestry cases, 161,803 East Asian ancestry controls	NA	5q31.1		rs1295685-G	NR	2E-16		0.0965	[0.074-0.119] unit decrease	Affymetrix, Illumina [25832605] (imputed)	N
1592	chr5	131996444	131996445	rs1295685	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atopic dermatitis	4,296 East Asian ancestry cases, 163,807 East Asian ancestry controls	NA	5q31.1		rs1295685-G	0.694925724	2E-17		0.22578353	[0.17-0.28] unit decrease	Illumina [13428180] (imputed)	N
1592	chr5	131996444	131996445	rs1295685	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Asthma	38,369 European ancestry cases, 411,131 European ancestry controls, 13,015 East Asian ancestry cases, 162,933 East Asian ancestry controls	NA	5q31.1		rs1295685-G	NR	2E-24		0.082	[0.066-0.098] unit decrease	Affymetrix, Illumina [25837673] (imputed)	N
1592	chr5	131996444	131996445	rs1295685	33385400	Patrick MT	2020-12-29	J Invest Dermatol	Causal relationship and shared genetic loci between psoriasis and type 2 diabetes through trans-disease meta-analysis.	Psoriasis or type 2 diabetes (trans-disease meta-analysis)(opposite effect)	11,024 European ancestry psoriasis cases, 74,124 European ancestry diabetes cases, 840,342 European ancestry controls	NA	5q31.1	NR	rs1295685-G		2E-14		1.1		NR [8016731] (imputed)	N
1592	chr5	131996444	131996445	rs1295685	33385400	Patrick MT	2020-12-29	J Invest Dermatol	Causal relationship and shared genetic loci between psoriasis and type 2 diabetes through trans-disease meta-analysis.	Psoriasis or type 2 diabetes (trans-disease meta-analysis)	11,024 European ancestry psoriasis cases, 74,124 European ancestry diabetes cases, 840,342 European ancestry controls	NA	5q31.1	NR	rs1295685-A	NR	5E-13		1.1	NR	NR [8016731] (imputed)	N
1592	chr5	131996444	131996445	rs1295685	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic disease (asthma, hay fever or eczema)	106,772 European ancestry cases, 239,773 European ancestry controls	83,335 cases, 34,934 controls	5q31.1	NR	rs1295685-A	0.1796	3E-19		1.065	[1.051-1.079]	Affymetrix [15688218] (imputed)	N
1592	chr5	131996444	131996445	rs1295685	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	5q31.1		rs1295685-?	NR	6E-13				NR [~ 8900000] (imputed)	N
1592	chr5	131996444	131996445	rs1295685	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma (childhood onset)	7,131 European ancestry cases, 13,631 European ancestry controls, 1,239 Japanese ancestry cases, 3,976 Japanese ancestry controls, 606 Latino cases, 792 Latino controls	NA	5q31.1	IL13, RAD50, IL4	rs1295685-A	NR	2E-9		1.1627907	[1.11-1.22]	Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
1592	chr5	131996444	131996445	rs1295685	26626624	Stuart PE	2015-11-28	Am J Hum Genet	Genome-wide Association Analysis of Psoriatic Arthritis and Cutaneous Psoriasis Reveals Differences in Their Genetic Architecture.	Psoriasis vulgaris	4,007 European ancestry cases, 4,934 European ancestry controls	up to 9,075 European ancestry cases, up to European ancestry 12,726 controls	5q31.1	IL13, IL4	rs1295685-G	0.7852	3E-14		1.216	NR	Illumina [up to 11532644] (imputed)	N
1592	chr5	131996444	131996445	rs1295685	23143594	Tsoi LC	2012-12-01	Nat Genet	Identification of 15 new psoriasis susceptibility loci highlights the role of innate immunity.	Psoriasis	10,588 European ancestry cases, 22,806 European ancestry controls	NA	5q31.1	IL13, IL4	rs1295685-G	0.798	3E-10		1.18		Illumina [111236] (imputed)	N
1592	chr5	131996499	131996500	rs848	34103634	Valette K	2021-06-08	Commun Biol	Prioritization of candidate causal genes for asthma in susceptibility loci derived from UK Biobank.	Asthma	56,167 White-British ancestry cases, 352,255 White-British ancestry controls	NA	5q31.1	IL13	rs848-C	0.817872325634739	6E-30		0.096334435	[0.08-0.113] unit decrease	Affymetrix [35186738] (imputed)	N
1592	chr5	131996499	131996500	rs848	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	5q31.1	IL13	rs848-A	0.19	9E-53				NR [> 9500000] (imputed)	N
1592	chr5	131996499	131996500	rs848	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	5q31.1	IL13	rs848-A	0.193015	1E-39		1.1060083	[1.08956060156834-1.12270415995589]	NR [9572556] (imputed)	N
1592	chr5	131996499	131996500	rs848	31959851	Olafsdottir TA	2020-01-20	Nat Commun	Eighty-eight variants highlight the role of T cell regulation and airway remodeling in asthma pathogenesis.	Asthma	16,247 European ancestry cases, 346,486 European ancestry controls, 52,942 cases, 355,713 controls	NA	5q31.1	IL13, IL4, RAD50, KIF3A, CCNI2, SEPT8	rs848-A	0.18213	5E-29		1.0942714	[1.08-1.11]	Affymetrix [32463443] (imputed)	N
1592	chr5	131996499	131996500	rs848	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	5q31.1	IL13	rs848-A	0.1814	8E-29				Affymetrix [15688218] (imputed)	N
1592	chr5	131996499	131996500	rs848	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	5q31.1	IL13	rs848-A	0.24	2E-24		1.068	[1.06-1.08]	Affymetrix, Illumina [8307659] (imputed)	N
1592	chr5	131996499	131996500	rs848	25608926	Betz RC	2015-01-22	Nat Commun	Genome-wide meta-analysis in alopecia areata resolves HLA associations and reveals two new susceptibility loci.	Alopecia areata	2,332 European ancestry cases and 5,233 European ancestry controls	764 European ancestry cases and 2,256 European ancestry controls	5q31.1	IL13, 1L4	rs848-A	NR	5E-9		1.27		Illumina [1233578] (imputed)	N
1592	chr5	131996499	131996500	rs848	23727859	Ellinghaus D	2013-06-02	Nat Genet	High-density genotyping study identifies four new susceptibility loci for atopic dermatitis.	Atopic dermatitis	2,425 European ancestry cases, 5,449 European ancestry controls	1,951 European ancestry cases, 4,599 European ancestry controls	5q31.1	IL13	rs848-T	0.2067	8E-28		1.4	[1.32-1.49]	Illumina [128830]	N
1592	chr5	131996668	131996669	rs847	34454985	Sliz E	2021-08-26	J Allergy Clin Immunol	Uniting biobank resources reveals novel genetic pathways modulating susceptibility for atopic dermatitis.	Atopic dermatitis	22,474 European ancestry cases, 774,187 European ancestry controls	NA	5q31.1	NR	rs847-t	0.2607	4E-17		1.1	[1.07-1.12]	Affymetrix, Illumina [16201029] (imputed)	N
1592	chr5	131996668	131996669	rs847	34116867	Tanaka N	2021-06-02	J Allergy Clin Immunol	Eight novel susceptibility loci and putative causal variants in atopic dermatitis.	Atopic dermatitis	2,597 Japanese ancestry cases, 110,504 Japanese ancestry controls	NA	5q31.1		rs847-?	NR	7E-15		0.79	[0.75-0.84]	Illumina [9900441] (imputed)	N
1592	chr5	131996668	131996669	rs847	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	5q31.1	IL13	rs847-T	NR	3E-9		0.143005	[0.096-0.19] unit decrease	Illumina [at least 950000] (imputed)	N
1592	chr5	131998412	131998413	rs2069757	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	5q31.1		rs2069757-G	0.926	2E-33				Affymetrix [10369434] (imputed)	N
1592	chr5	131998412	131998413	rs2069757	24920014	Cozen W	2014-06-12	Nat Commun	A meta-analysis of Hodgkin lymphoma reveals 19p13.3 TCF3 as a novel susceptibility locus.	Hodgkin's lymphoma	1,816 European ancestry cases, 7,877 European ancestry controls	1,281 European ancestry cases, 3,218 European ancestry controls	5q31.1	IL13	rs2069757-A	0.07	2E-11		1.59	[1.39-1.82]	Affymetrix, Illumina [1004829] (imputed)	N
1592	chr5	131998875	131998876	rs1295683	30787463	Escala-Garcia M	2019-02-21	Br J Cancer	Genome-wide association study of germline variants and breast cancer-specific mortality.	Breast cancer specific mortality in breast cancer	7,697 European ancestry cases, 88,964 European ancestry controls	NA	5q31.1	NR	rs1295683-?	NR	6E-7		0.88253576	[0.84-0.93]	Affymetrix, Illumina [~ 10400000] (imputed)	N
1592	chr5	131999170	131999171	rs2243297	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	5q31.1	NR	rs2243297-?	NR	4E-10				Affymetrix [~ 8270000] (imputed)	N
1592	chr5	132004755	132004756	rs762534	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	5q31.1	NR	rs762534-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1592	chr5	132007912	132007913	rs72797396	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	5q31.1	Intergenic	rs72797396-T	NR	4E-9		0.0259569	[0.017-0.035] unit decrease	Illumina [13519193] (imputed)	N
1592	chr5	132007912	132007913	rs72797396	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	5q31.1	Intergenic	rs72797396-T	NR	2E-9		0.0242298	[0.016-0.032] unit decrease	Illumina [13520550] (imputed)	N
1592	chr5	132008535	132008536	rs142117234	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	5q31.1	IL13, RAD50	rs142117234-A	0.00306	4E-8		1.4060003	[1.28-1.53]	Affymetrix [8274727] (imputed)	N
1592	chr5	132024165	132024166	rs11747814	34785669	Grosche S	2021-11-16	Nat Commun	Rare variant analysis in eczema identifies exonic variants in DUSP1, NOTCH4 and SLC9A4.	Eczema	20,016 European ancestry cases, 380,433 European ancestry controls	NA	5q31.1		rs11747814-T	0.7186	3E-18		0.9		Affymetrix, Illumina [9397031] (imputed)	N
1592	chr5	132025486	132025487	rs11242123	35115690	Lopera-Maya EA	2022-02-03	Nat Genet	Effect of host genetics on the gut microbiome in 7,738 participants of the Dutch Microbiome Project.	Gut bacterial pathway abundance (PWY.7209..superpathway.of.pyrimidine.ribonucleosides.degradation)	7,738 European ancestry individuals	NA	5q31.1		rs11242123-A	0.87144837	5E-8		0.1611501	[0.1-0.22] unit decrease	Illumina [5584686] (imputed)	N
1592	chr5	132028857	132028858	rs4705962	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (multivariate analysis)	477,968 European ancestry individuals	NA	5q31.1	KIF3A	rs4705962-T	0.234	2E-10		0.031	[0.021-0.041] unit decrease	NR [NR] (imputed)	N
1592	chr5	132028857	132028858	rs4705962	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (age of onset)	117,130 European ancestry individuals	NA	5q31.1	KIF3A	rs4705962-T	0.234	2E-10		0.031	[0.021-0.041] unit decrease	NR [7647814] (imputed)	N
1592	chr5	132028857	132028858	rs4705962	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (age of onset)	37,846 British ancestry individuals	NA	5q31.1	NR	rs4705962-T	0.229	6E-10		0.985	[0.67-1.3] unit decrease	Affymetrix [10894596] (imputed)	N
1592	chr5	132028857	132028858	rs4705962	26482879	Paternoster L	2015-10-19	Nat Genet	Multi-ancestry genome-wide association study of 21,000 cases and 95,000 controls identifies new risk loci for atopic dermatitis.	Atopic dermatitis	18,900 European ancestry cases, 1,472 Japanese ancestry cases, 422 African American cases, 300 Latino cases, 305 cases, 84,166 European ancestry controls, 7,966 Japanese ancestry controls, 844 African American controls, 1,592 Latino controls, 896 controls	30,588 European ancestry cases, 459 African American cases, 1,012 Chinese ancestry cases, 226,537 European ancestry controls, 729 African American controls, 1,362 Chinese ancestry controls	5q31.1	IL13	rs4705962-T	0.28	7E-12	(conditional on rs6419573)	1.1	[1.07-1.13]	Illumina [15539996] (imputed)	N
1592	chr5	132029413	132029414	rs17510339	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	5q31.1	NR	rs17510339-?	NR	2E-20				Affymetrix [~ 8270000] (imputed)	N
1592	chr5	132029413	132029414	rs17510339	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	5q31.1	CCNI2, IL4, KIF3A	rs17510339-T	0.123621	2E-11		1.0658838	[1.05-1.08]	Affymetrix [8274727] (imputed)	N
1592	chr5	132029490	132029491	rs4705963	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	5q31.1	KIF3A	rs4705963-G	0.749072	1E-18		0.024285747	[0.019-0.03] unit increase	Affymetrix [93095623] (imputed)	N
1592	chr5	132030666	132030667	rs17690965	26542096	Marenholz I	2015-11-06	Nat Commun	Meta-analysis identifies seven susceptibility loci involved in the atopic march.	Atopic march	1,151 European ancestry early-onset eczema and childhood asthma cases, 10,030 European ancestry controls	1,277  European ancestry early-onset eczema and childhood asthma cases, 7,004  European ancestry controls	5q31.1	IL4, KIF3A	rs17690965-C	0.264	5E-8		1.24	[1.15-1.33]	Affymetrix, Illumina [1633153] (imputed)	N
1592	chr5	132034587	132034588	rs10455052	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	5q31.1	NR	rs10455052-?	NR	1E-12				Affymetrix [~ 8270000] (imputed)	N
1592	chr5	132042041	132042041	rs200994624	33961016	Moksnes MR	2021-05-07	Hum Mol Genet	Genome-wide association study of cardiac troponin I in the general population.	Change in high-sensitivity cardiac troponin I concentration	5,178 European ancestry individuals	NA	5q31.1		rs200994624-TA	0.0332	1E-6		0.27	[0.15-0.39] unit increase	Illumina [21233433] (imputed)	N
1592	chr5	132043350	132043351	rs17691077	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	5q31.1	KIF3A	rs17691077-C	NR	3E-7		0.0524213	[0.032-0.072] unit decrease	Illumina [13520550] (imputed)	N
1592	chr5	132049026	132049027	rs2897442	26482879	Paternoster L	2015-10-19	Nat Genet	Multi-ancestry genome-wide association study of 21,000 cases and 95,000 controls identifies new risk loci for atopic dermatitis.	Atopic dermatitis	18,900 European ancestry cases, 1,472 Japanese ancestry cases, 422 African American cases, 300 Latino cases, 305 cases, 84,166 European ancestry controls, 7,966 Japanese ancestry controls, 844 African American controls, 1,592 Latino controls, 896 controls	30,588 European ancestry cases, 459 African American cases, 1,012 Chinese ancestry cases, 226,537 European ancestry controls, 729 African American controls, 1,362 Chinese ancestry controls	5q31.1	KIF3A	rs2897442-C	NR	1E-10	(EA, fixed effects)	1.09	[1.06-1.12]	Illumina [15539996] (imputed)	N
1592	chr5	132049026	132049027	rs2897442	22197932	Paternoster L	2011-12-25	Nat Genet	Meta-analysis of genome-wide association studies identifies three new risk loci for atopic dermatitis.	Atopic dermatitis	5,606 European ancestry cases, 20,565 European ancestry controls	5,419 European ancestry cases, 19,833 European ancestry controls	5q31.1	KIF3A	rs2897442-C	0.29	4E-8		1.11	[1.07-1.15]	Affymetrix, Illumina [~ 2500000] (imputed)	N
1592	chr5	132056873	132056874	rs2051809	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (childhood onset)	9,433 British ancestry cases, 318,237 British ancestry controls	NA	5q31.1	KIF3A, IL4, CCNI2	rs2051809-A	0.247	3E-22		1.175	[1.137-1.214]	Affymetrix [10894596] (imputed)	N
1592	chr5	132057409	132057409	rs532569968	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	5q31.1	KIF3A	rs532569968-TA	0.157108	1E-10		0.02239119	[0.016-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
1592	chr5	132060582	132060583	rs10074523	29785011	Zhu Z	2018-05-21	Nat Genet	A genome-wide cross-trait analysis from UK Biobank highlights the shared genetic architecture of asthma and allergic diseases.	Asthma or allergic disease (pleiotropy)	14,085 European asthma cases, 25,685 European ancestry allergic diseases cases, 76,768 European ancestry controls	NA	5q31.1	CCNI2, IL4, KIF3A, SEPT8	rs10074523-?	NR	2E-10		1.1		NR [74888535] (imputed)	N
1592	chr5	132069705	132069706	rs9327638	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	5q31.1	NR	rs9327638-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
1592	chr5	132069705	132069706	rs9327638	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	5q31.1	NR	rs9327638-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
1592	chr5	132069705	132069706	rs9327638	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	5q31.1	IL4, IL13, KIF3A, RAD50	rs9327638-G	0.80369	1E-11		1.0578649	[1.04-1.07]	Affymetrix [8274727] (imputed)	N
1592	chr5	132069705	132069706	rs9327638	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	5q31.1	KIF3A	rs9327638-G	NR	1E-8	(women)	0.0397962	[0.026-0.054] unit decrease	Illumina [13520550] (imputed)	N
1592	chr5	132070332	132070333	rs7732667	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	5q31.1	IL4, KIF3A, SEP8	rs7732667-?		3E-10				Affymetrix, Illumina [NR] (imputed)	N
1592	chr5	132084228	132084229	rs72799426	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	5q31.1	NR	rs72799426-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1592	chr5	132084228	132084229	rs72799426	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	5q31.1	NR	rs72799426-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
1592	chr5	132105697	132105698	rs113010607	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	5q31.1	SEPT8	rs113010607-?	NR	2E-19		1.126	[1.1-1.15]	Affymetrix [9000000] (imputed)	N
1592	chr5	132105697	132105698	rs113010607	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	5q31.1	SEPT8	rs113010607-C	NR	3E-13		1.095	[1.07-1.12]	Affymetrix [9000000] (imputed)	N
1592	chr5	132106060	132106061	rs184909362	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	5q31.1		rs184909362-?	NR	5E-17				NR [~ 8900000] (imputed)	N
1592	chr5	132109122	132109123	rs13354173	31560688	Geidenstam N	2019-09-27	PLoS One	Using metabolite profiling to construct and validate a metabolite risk score for predicting future weight gain.	Niacinamide levels	1,937 individuals	NA	5q31.1	SEPT8	rs13354173-T	0.004	5E-7		1.2052	[0.73-1.68] unit increase	Affymetrix, Illumina [up to 22000000] (imputed)	N
1592	chr5	132109965	132109966	rs30526	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Respiratory diseases	approximately 459,000 European ancestry individuals	NA	5q31.1		rs30526-?	NR	2E-12				NR [~ 8900000] (imputed)	N
1593	chr5	132123535	132123536	rs11746729	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	5q31.1	Intergenic	rs11746729-G	NR	2E-10		0.0267064	[0.018-0.035] unit decrease	Illumina [13519193] (imputed)	N
1593	chr5	132123535	132123536	rs11746729	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	5q31.1	Intergenic	rs11746729-G	NR	2E-12		0.02689	[0.019-0.034] unit decrease	Illumina [13520550] (imputed)	N
1593	chr5	132123535	132123536	rs11746729	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	5q31.1	Intergenic	rs11746729-G	NR	3E-15		0.0351208	[0.026-0.044] unit decrease	Illumina [13520550] (imputed)	N
1593	chr5	132126093	132126093	rs397831028	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	5q31.1		rs397831028-TC	0.613623	2E-8		0.0120626	[0.0079-0.0163] unit increase	Illumina [13479295] (imputed)	N
1593	chr5	132126093	132126093	rs397831028	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	5q31.1	SEPT8, SOWAHA	rs397831028-?	NR	5E-11		0.019876795	[0.014-0.026] unit increase	Illumina [27896057] (imputed)	N
1593	chr5	132128217	132128218	rs803141	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	5q31.1	SEPT8, SOWAHA	rs803141-T	NR	1E-6		0.13988	[0.083-0.197] unit decrease	Illumina [at least 950000] (imputed)	N
1593	chr5	132130955	132130955	rs150384815	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs150384815-A	0.915368	3E-12		0.111526	[0.079-0.144] increase	Affymetrix [11014269] (imputed)	N
1593	chr5	132140625	132140626	rs60689780	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	5q31.1	SEPT8	rs60689780-G	0.29732	2E-11		0.017268442	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1593	chr5	132146847	132146848	rs4705971	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	5q31.1	SOWAHA	rs4705971-T	NR	7E-11		0.0371462	[0.026-0.048] unit decrease	Affymetrix [321169] (imputed)	N
1593	chr5	132151797	132151798	rs72799442	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	5q31.1	NR	rs72799442-A	NR	4E-17		0.0409	[0.031-0.051] unit decrease	Affymetrix [9000000] (imputed)	N
1593	chr5	132151797	132151798	rs72799442	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	5q31.1	NR	rs72799442-A	NR	4E-10		0.0303	[0.021-0.04] unit decrease	Affymetrix [9000000] (imputed)	N
1593	chr5	132154911	132154912	rs59698941	27412012	Lamina C	2016-07-12	Hum Mol Genet	A genome-wide association meta-analysis on apolipoprotein A-IV concentrations.	Apolipoprotein A-IV levels	13,813 European ancestry individuals	2,267 European ancestry individuals	5q31.1	SOWAHA	rs59698941-G	0.14	2E-6		0.2628	[0.045-0.481] unit decrease	Affymetrix, Illumina [at least 7000000] (imputed)	N
1593	chr5	132161293	132161294	rs2292030	27412012	Lamina C	2016-07-12	Hum Mol Genet	A genome-wide association meta-analysis on apolipoprotein A-IV concentrations.	Apolipoprotein A-IV levels	13,813 European ancestry individuals	2,267 European ancestry individuals	5q31.1	SHROOM1	rs2292030-A	0.138	4E-6		0.2629	[0.049-0.477] unit decrease	Affymetrix, Illumina [at least 7000000] (imputed)	N
1593	chr5	132183940	132183940	rs570204236	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	5q31.1	RNA5SP192	rs570204236-AAAAT	NR	2E-8		0.0313039	[0.02-0.042] unit decrease	Affymetrix [319769] (imputed)	N
1593	chr5	132184082	132184083	rs17516645	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	5q31.1	RNA5SP192	rs17516645-C	NR	1E-8		0.0318687	[0.021-0.043] unit decrease	Affymetrix [319769] (imputed)	N
1593	chr5	132184082	132184083	rs17516645	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	5q31.1	RNA5SP192	rs17516645-C	NR	8E-9		0.0326365	[0.022-0.044] unit decrease	Affymetrix [321114] (imputed)	N
1593	chr5	132203951	132203952	rs55767930	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LEAP2	5,368 Icelandic ancestry individuals	NA	5q31.1		rs55767930-A	0.1647	3E-27		0.276229	[0.23-0.33] unit increase	Illumina [7506463] (imputed)	N
1593	chr5	132210673	132210674	rs57880964	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	5q31.1	LEAP2	rs57880964-G	0.838125	4E-19	(LEAP2, 5708_1_3)	0.30025315	[0.23-0.37] unit decrease	Illumina [> 1000000] (imputed)	N
1593	chr5	132226668	132226669	rs12163971	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	5q31.1	AFF4	rs12163971-A	0.1573	1E-15		0.0029	[0.0021-0.0037] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
1593	chr5	132226668	132226669	rs12163971	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	5q31.1	AFF4	rs12163971-A	0.164	2E-15		0.0032	[0.0022-0.0042] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
1593	chr5	132227749	132227750	rs56398801	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	5q31.1	AFF4	rs56398801-T	NR	1E-7		0.0577585	[0.036-0.079] unit increase	Illumina [13519193] (imputed)	N
1593	chr5	132227749	132227750	rs56398801	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	5q31.1	AFF4	rs56398801-T	NR	2E-6		0.0479567	[0.028-0.067] unit increase	Illumina [13520550] (imputed)	N
1593	chr5	132239938	132239939	rs12513758	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol consumption (drinks per week) (MTAG)	972,915 European ancestry individuals	NA	5q31.1	NR	rs12513758-G	0.161	3E-9		0.014246159	[0.0095-0.019] unit decrease	Affymetrix [NR] (imputed)	N
1593	chr5	132244467	132244468	rs59383773	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	5q31.1	AFF4	rs59383773-?	NR	5E-7		0.0207481	[0.013-0.029] unit decrease	Illumina [13520550] (imputed)	N
1593	chr5	132248103	132248104	rs57550938	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	5q31.1	NR	rs57550938-G	0.834945	3E-8		0.0151576	[0.0098-0.0205] unit decrease	NR [NR]	N
1594	chr5	132279226	132279227	rs17691542	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Problematic alcohol use (MTAG)	972,915 European ancestry individuals	NA	5q31.1	NR	rs17691542-C	0.1597	5E-8		0.0153036	[0.0098-0.0208] unit decrease	Affymetrix [10613246] (imputed)	N
1594	chr5	132284250	132284251	rs17691584	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	5q31.1	AFF4, ATP6V0E1P1	rs17691584-C	NR	1E-8		0.0216259	[0.014-0.029] unit decrease	Affymetrix [321114] (imputed)	N
1594	chr5	132284250	132284251	rs17691584	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	5q31.1	AFF4, ATP6V0E1P1	rs17691584-C	NR	2E-11		0.0253298	[0.018-0.033] unit decrease	Affymetrix [321169] (imputed)	N
1594	chr5	132284250	132284251	rs17691584	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	5q31.1	NR	rs17691584-?	NR	8E-10				Affymetrix [~ 8270000] (imputed)	N
1594	chr5	132322505	132322505	rs59414721	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	5q31.1	AC010240.3	rs59414721-TG	NR	5E-9		0.0222473	[0.015-0.03] unit decrease	Affymetrix [319769] (imputed)	N
1594	chr5	132322505	132322505	rs59414721	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	5q31.1	AC010240.3	rs59414721-TG	NR	4E-9		0.0223981	[0.015-0.03] unit decrease	Affymetrix [319769] (imputed)	N
1594	chr5	132322505	132322505	rs59414721	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	5q31.1	AC010240.3	rs59414721-TG	0.166461	4E-13		0.02181028	[0.016-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
1594	chr5	132322851	132322852	rs12332674	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	5q31.1		rs12332674-?	NR	7E-9				NR [~ 8900000] (imputed)	N
1594	chr5	132330151	132330152	rs7702102	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	5q31.1	Intergenic	rs7702102-A	NR	5E-7	(between families)	5.034	unit decrease	Affymetrix [up to 15107142] (imputed)	N
1594	chr5	132349653	132349654	rs4705986	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	5q31.1	NR	rs4705986-T	0.9385	2E-13		0.0281	[0.021-0.036] unit increase	NR [~ 27400000] (imputed)	N
1594	chr5	132360652	132360653	rs72801433	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	5q31.1	NR	rs72801433-G	NR	6E-11		0.0319	[0.022-0.042] unit decrease	Affymetrix [9000000] (imputed)	N
1594	chr5	132360652	132360653	rs72801433	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	5q31.1	NR	rs72801433-G	NR	4E-9		0.0288	[0.019-0.038] unit decrease	Affymetrix [9000000] (imputed)	N
1594	chr5	132360652	132360653	rs72801433	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	5q31.1	NR	rs72801433-G	NR	6E-14		0.0367	[0.027-0.046] unit decrease	Affymetrix [9000000] (imputed)	N
1594	chr5	132360652	132360653	rs72801433	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	5q31.1	NR	rs72801433-G	NR	5E-10		0.0304	[0.021-0.04] unit decrease	Affymetrix [9000000] (imputed)	N
1594	chr5	132360652	132360653	rs72801433	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	5q31.1	NR	rs72801433-G	NR	6E-13		0.035	[0.025-0.045] unit decrease	Affymetrix [9000000] (imputed)	N
1594	chr5	132360652	132360653	rs72801433	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	5q31.1	NR	rs72801433-G	NR	2E-13		0.0359	[0.026-0.046] unit increase	Affymetrix [9000000] (imputed)	N
1594	chr5	132360652	132360653	rs72801433	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	5q31.1	NR	rs72801433-G	NR	2E-9		0.0294	[0.02-0.039] unit increase	Affymetrix [9000000] (imputed)	N
1594	chr5	132375434	132375435	rs62381946	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	5q31.1	HSPA4	rs62381946-T	NR	1E-10		0.0209194	[0.015-0.027] unit decrease	Affymetrix [321114] (imputed)	N
1594	chr5	132381339	132381340	rs10064506	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	5q31.1	HSPA4	rs10064506-A	NR	1E-10		0.0211126	[0.015-0.028] unit decrease	Affymetrix [319769] (imputed)	N
1594	chr5	132381339	132381340	rs10064506	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	5q31.1	HSPA4	rs10064506-A	NR	3E-14		0.0252162	[0.019-0.032] unit decrease	Affymetrix [321169] (imputed)	N
1594	chr5	132382271	132382272	rs57079115	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	5q31.1	NR	rs57079115-T	0.26	5E-6		1.06	[1.04-1.09]	Affymetrix [9886854] (imputed)	N
1594	chr5	132382271	132382272	rs57079115	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	5q31.1	NR	rs57079115-T	0.26	1E-8			[NR]	Affymetrix [9886854] (imputed)	N
1594	chr5	132382271	132382272	rs57079115	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in non-current smokers	16,488 European ancestry cases, 169,688 European ancestry controls	NA	5q31.1	NR	rs57079115-T	0.26	5E-6		1.06	[1.04-1.09]	Affymetrix [9886854] (imputed)	N
1594	chr5	132382271	132382272	rs57079115	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	5q31.1		rs57079115-?	NR	2E-15				NR [~ 8900000] (imputed)	N
1595	chr5	132388958	132388959	rs72801445	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	5q31.1	HSPA4	rs72801445-C	0.764608	2E-19		0.0196744	[0.015-0.024] unit decrease	NR [13737936] (imputed)	N
1595	chr5	132388959	132388960	rs66827546	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	5q31.1		rs66827546-A	NR	1E-22		0.0229	[0.018-0.027] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
1595	chr5	132397350	132397351	rs55747751	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	5q31.1	HSPA4	rs55747751-A	NR	2E-9		0.0341138	[0.023-0.045] unit decrease	Affymetrix [323858] (imputed)	N
1595	chr5	132397350	132397351	rs55747751	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	5q31.1	HSPA4	rs55747751-A	NR	5E-9		0.0332959	[0.022-0.044] unit decrease	Affymetrix [127266] (imputed)	N
1595	chr5	132397350	132397351	rs55747751	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q31.1	NR	rs55747751-A	0.0769713	2E-10				Affymetrix, Illumina [23467995] (imputed)	N
1595	chr5	132397350	132397351	rs55747751	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	5q31.1	HSPA4	rs55747751-A	0.0795	6E-14		0.2159	[0.16-0.27] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1595	chr5	132407057	132407058	rs6596100	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	5q31.1		rs6596100-T	NR	2E-8		0.96	[0.95-0.97]	Affymetrix, Illumina [NR] (imputed)	N
1595	chr5	132407057	132407058	rs6596100	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	5q31.1	HSPA4	rs6596100-C	0.75	8E-9	(EA)	1.0638298	[1.04-1.09] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
1595	chr5	132408966	132408967	rs61755724	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	5q31.1		rs61755724-A	0.024	1E-8		0.2504679	[0.16-0.34] mmHg increase	Affymetrix, Illumina [242866] (imputed)	N
1595	chr5	132412298	132412299	rs11747001	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	5q31.1	NR	rs11747001-A	0.76	3E-18		0.018	[0.014-0.022] unit increase	Affymetrix [2446094] (imputed)	N
1595	chr5	132412298	132412299	rs11747001	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	5q31.1	NR	rs11747001-A	0.76	5E-8				Affymetrix [2446094] (imputed)	N
1595	chr5	132412298	132412299	rs11747001	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	315,284 European ancestry male individuals	NA	5q31.1	NR	rs11747001-A	0.7639	8E-18		0.0172	[0.013-0.021] unit increase	NR [~ 27400000] (imputed)	N
1595	chr5	132412298	132412299	rs11747001	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	5q31.1	NA	rs11747001-A	0.7638	8E-15		0.0154	[0.011-0.019] unit increase	NR [~ 27400000] (imputed)	N
1595	chr5	132426195	132426196	rs140767284	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	5q31.1		rs140767284-?	NR	3E-13				NR [~ 8900000] (imputed)	N
1595	chr5	132426851	132426853	rs147133967	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	5q31.1		rs147133967-G	NR	5E-15		0.0314	[0.024-0.039] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
1595	chr5	132426851	132426853	rs147133967	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	5q31.1		rs147133967-G	NR	2E-10		0.0249	[0.017-0.033] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
1595	chr5	132426851	132426853	rs147133967	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	5q31.1	HSPA4	rs147133967-G	0.092129	4E-20		0.03568806	[0.028-0.043] unit increase	Affymetrix [93095623] (imputed)	N
1595	chr5	132426851	132426853	rs147133967	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	5q31.1	HSPA4	rs147133967-G	0.092123	3E-20		0.03584965	[0.028-0.043] unit increase	Affymetrix [93095623] (imputed)	N
1595	chr5	132426851	132426853	rs147133967	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	5q31.1	HSPA4	rs147133967-G	0.092108	7E-12		0.026579138	[0.019-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
1595	chr5	132426851	132426853	rs147133967	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	5q31.1	HSPA4	rs147133967-G	0.0921380000000001	4E-18		0.03386764	[0.026-0.042] unit decrease	Affymetrix [93095623] (imputed)	N
1595	chr5	132426851	132426853	rs147133967	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	5q31.1	HSPA4	rs147133967-G	0.092102	2E-18		0.0335735	[0.026-0.041] unit increase	Affymetrix [93095623] (imputed)	N
1595	chr5	132426851	132426853	rs147133967	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	5q31.1	HSPA4	rs147133967-G	0.0921	1E-18		0.033836495	[0.026-0.041] unit increase	Affymetrix [93095623] (imputed)	N
1595	chr5	132426851	132426853	rs147133967	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	5q31.1	HSPA4	rs147133967-G	0.0928	6E-9		0.03596435	[0.024-0.048] unit increase	Affymetrix [~ 2500000] (imputed)	N
1595	chr5	132439009	132439010	rs62375246	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	5q31.1	HSPA4	rs62375246-A	0.26	2E-8		1.06	[1.04-1.09]	Affymetrix, Illumina [6224355] (imputed)	N
1595	chr5	132441798	132441799	rs571173399	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	5q31.1		rs571173399-?	NR	4E-8		0.00596341	[0.0038-0.0081] unit increase	NR [NR]	N
1595	chr5	132441798	132441799	rs571173399	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	5q31.1		rs571173399-?	NR	3E-24		0.0242276	[0.019-0.029] unit decrease	Affymetrix [20259828] (imputed)	N
1595	chr5	132442189	132442190	rs56076449	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	5q31.1	HSPA4, FSTL4	rs56076449-G	NR	9E-11				Affymetrix, Illumina [NR] (imputed)	N
1595	chr5	132442189	132442190	rs56076449	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	5q31.1	HSPA4, FSTL4	rs56076449-G	NR	4E-7	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1595	chr5	132442189	132442190	rs56076449	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	5q31.1	HSPA4, FSTL4	rs56076449-G	NR	4E-7	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1595	chr5	132442189	132442190	rs56076449	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	5q31.1	HSPA4, FSTL4	rs56076449-G	NR	3E-11				Affymetrix, Illumina [NR] (imputed)	N
1595	chr5	132442189	132442190	rs56076449	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	5q31.1	HSPA4, FSTL4	rs56076449-G	NR	9E-6	(EA)	0.013	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1595	chr5	132442189	132442190	rs56076449	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	5q31.1	HSPA4, FSTL4	rs56076449-G	NR	7E-9		0.013	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1595	chr5	132442189	132442190	rs56076449	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	5q31.1	HSPA4, FSTL4	rs56076449-G	NR	1E-6		0.013	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1595	chr5	132442189	132442190	rs56076449	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	5q31.1	HSPA4, FSTL4	rs56076449-G	NR	3E-8	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1595	chr5	132442189	132442190	rs56076449	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	5q31.1	HSPA4, FSTL4	rs56076449-G	NR	4E-7	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1595	chr5	132443410	132443411	rs72801470	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	5q31.1	HSPA4	rs72801470-C	NR	1E-10		0.0208683	[0.015-0.027] unit decrease	Affymetrix [319769] (imputed)	N
1595	chr5	132443726	132443727	rs62375251	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	5q31.1		rs62375251-?	NR	1E-22				NR [~ 8900000] (imputed)	N
1595	chr5	132444127	132444128	rs72801474	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycoprotein acetyls levels	115,082 European ancestry individuals	NA	5q31.1		rs72801474-G	0.907336	2E-9		0.0421732	[0.028-0.056] unit increase	NR [11722792] (imputed)	N
1595	chr5	132444127	132444128	rs72801474	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	5q31.1		rs72801474-A	NR	2E-12		0.0284	[0.021-0.036] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
1595	chr5	132444127	132444128	rs72801474	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	5q31.1	HSPA4	rs72801474-A	NR	1E-10		0.0313037	[0.022-0.041] unit decrease	Affymetrix [319769] (imputed)	N
1595	chr5	132444127	132444128	rs72801474	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	5q31.1	HSPA4	rs72801474-A	NR	1E-10		0.0313673	[0.022-0.041] unit decrease	Affymetrix [319769] (imputed)	N
1595	chr5	132444127	132444128	rs72801474	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	5q31.1	HSPA4	rs72801474-A	NR	3E-10		0.030838	[0.021-0.04] unit decrease	Affymetrix [321114] (imputed)	N
1595	chr5	132444127	132444128	rs72801474	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	5q31.1	HSPA4	rs72801474-A	NR	2E-14		0.03756	[0.028-0.047] unit decrease	Affymetrix [321169] (imputed)	N
1595	chr5	132444127	132444128	rs72801474	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	5q31.1	HSPA4	rs72801474-G	0.907928	1E-18		0.00353551	[0.0027-0.0043] unit increase	Affymetrix [13995440] (imputed)	N
1595	chr5	132444127	132444128	rs72801474	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	5q31.1	HSPA4	rs72801474-G	0.908159	5E-19		0.0307663	[0.024-0.038] unit increase	Affymetrix [NR] (imputed)	N
1595	chr5	132444127	132444128	rs72801474	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	5q31.1	HSPA4	rs72801474-G	0.908103	1E-10		0.0212955	[0.015-0.028] unit decrease	Affymetrix [NR] (imputed)	N
1595	chr5	132444127	132444128	rs72801474	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	5q31.1	FSTL4	rs72801474-?	NR	3E-9		0.0268	[0.019-0.035] unit decrease	Affymetrix [5701386] (imputed)	N
1595	chr5	132444127	132444128	rs72801474	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	Triglyceride levels	291,107 British ancestry individuals	NA	5q31.1	HSPA4	rs72801474-A	0.0930294	1E-6		0.0175136	[0.01-0.025] unit decrease	Affymetrix [9463307] (imputed)	N
1595	chr5	132444127	132444128	rs72801474	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	High density lipoprotein cholesterol levels	291,107 British ancestry individuals	NA	5q31.1	HSPA4	rs72801474-A	0.0930294	1E-6		0.00758832	[0.0045-0.0107] unit increase	Affymetrix [9463307] (imputed)	N
1595	chr5	132444127	132444128	rs72801474	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	5q31.1	NR	rs72801474-?	NR	2E-19				Affymetrix [~ 8270000] (imputed)	N
1595	chr5	132444127	132444128	rs72801474	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	5q31.1	NR	rs72801474-?	NR	3E-16				Affymetrix [~ 8270000] (imputed)	N
1595	chr5	132444127	132444128	rs72801474	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	5q31.1		rs72801474-?	NR	3E-11				NR [~ 8900000] (imputed)	N
1595	chr5	132444127	132444128	rs72801474	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	5q31.1		rs72801474-?	NR	9E-18				NR [~ 8900000] (imputed)	N
1595	chr5	132444127	132444128	rs72801474	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	5q31.1		rs72801474-?	NR	8E-12				NR [~ 8900000] (imputed)	N
1595	chr5	132444127	132444128	rs72801474	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	5q31.1	NR	rs72801474-A	0.0927204	3E-15		0.0419594	[0.032-0.052] unit decrease	NR [19129689] (imputed)	N
1595	chr5	132444127	132444128	rs72801474	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	5q31.1	NR	rs72801474-A	0.0884	2E-17		0.0295	[0.023-0.036] unit decrease	NR [~ 27400000] (imputed)	N
1595	chr5	132444300	132444301	rs11745702	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	5q31.1	intergenic	rs11745702-T	0.7608	1E-8		0.0193	[0.013-0.026] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1595	chr5	132445759	132445760	rs62374461	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	5q31.1		rs62374461-?	NR	7E-10				NR [~ 8900000] (imputed)	N
1595	chr5	132457196	132457197	rs73790215	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque score in type 2 diabetes	691 African American individuals	205 African American individuals	5q31.1	intergenic	rs73790215-?	NR	6E-6		1.37	[0.56-2.18] unit decrease	Illumina [at least 13000000] (imputed)	N
1595	chr5	132467372	132467373	rs10479024	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	5q31.1	intergenic	rs10479024-A	0.0726	1E-10		0.0376	[0.026-0.049] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1595	chr5	132488439	132488440	rs4631227	34062886	Nazarian A	2021-05-01	Genes (Basel)	Genome-Wide Analysis of Sex Disparities in the Genetic Architecture of Lung and Colorectal Cancers.	Colorectal cancer	211 European ancestry female cases, 186 European ancestry male cases, 8,382 European ancestry female controls, 6,312 European ancestry male controls	NA	5q31.1	FSTL4	rs4631227-A	0.293	3E-6	(Male)	1.663	[1.34-1.98]	NR [up to 1668415] (imputed)	N
1596	chr5	132528271	132528272	rs4403228	32890573	Yan Q	2020-09-02	J Allergy Clin Immunol	A genome-wide association study of asthma hospitalizations in adults.	Exacerbations requiring hospitalisation in asthma	1,658 British ancestry cases, 32,509 British ancestry controls	NA	5q31.1	NR	rs4403228-C	0.67	4E-6		1.19	[NR]	Affymetrix [87696888] (imputed)	N
1596	chr5	132534020	132534021	rs3798104	29273593	Duan L	2017-12-22	Stroke	Novel Susceptibility Loci for Moyamoya Disease Revealed by a Genome-Wide Association Study.	Moyamoya disease	755 Han Chinese ancestry cases, 2,031 Han Chinese ancestry controls	724 Han Chinese ancestry cases, 3,043 Han Chinese ancestry controls	5q31.1	NR	rs3798104-A	0.72	4E-6		1.25	[NR]	Illumina [747089]	N
1596	chr5	132560149	132560150	rs2303670	22179738	Lai HM	2011-12-16	Rheumatology (Oxford)	Gout and type 2 diabetes have a mutual inter-dependent effect on genetic risk factors and higher incidences.	Gout	20 Han Chinese ancestry male gout cases, 42 Han Chinese ancestry male controls	NA	5q31.1	FSTL4	rs2303670-?		1E-7				Illumina [479403]	N
1596	chr5	132600710	132600711	rs55924278	30353303	Seo M	2018-10-23	J Mol Med (Berl)	Genomics and response to long-term oxygen therapy in chronic obstructive pulmonary disease.	Response to long-term oxygen therapy in chronic obstructive pulmonary disease	290 European ancestry individuals	NA	5q31.1	NR	rs55924278-?	NR	7E-6				Illumina [5946283] (imputed)	N
1596	chr5	132628883	132628884	rs17166496	17554300	Wellcome Trust Case Control Consortium	2007-06-07	Nature	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Type 1 diabetes	1,963 European ancestry cases, 2,938 European ancestry controls	(see Todd 2007)	5q31.1	NR	rs17166496-G	0.61	5E-6		1.3	[1.15-1.47]	Affymetrix [469557]	N
1597	chr5	132650870	132650871	rs10515457	26926045	Adhikari K	2016-03-01	Nat Commun	A genome-wide association scan in admixed Latin Americans identifies loci influencing facial and scalp hair features.	Eyebrow thickness	2,922 Latin American individuals	NA	5q31.1	FSTL4, HSPA4, MIR1289-2, ZCCHC10	rs10515457-?	NR	3E-6				Illumina [9143600] (imputed)	N
1597	chr5	132652280	132652281	rs17683306	34749984	Borgio JF	2021-11-04	Comput Biol Med	Exome array identifies functional exonic biomarkers for pediatric dental caries.	Pediatric dental caries (decayed, missing and filled teeth >5)	76 Arab ancestry cases, 35 Arab ancestry controls	NA	5q31.1		rs17683306-C	0.729	4E-6		0.07	[0.02-0.27]	Illumina [243345]	N
1597	chr5	132733466	132733467	rs28716841	32126890	Ter Hark SE	2020-03-04	J Psychopharmacol	A new genetic locus for antipsychotic-induced weight gain: A genome-wide study of first-episode psychosis patients using amisulpride (from the OPTiMiSE cohort).	Weight gain in amisulpride-treated first-episode psychosis	184 European ancestry individuals, 9 African ancestry individuals, 6 Hispanic/Latin American individuals, 3 South Asian ancestry individuals, 2 East Asian ancestry individuals, 2 individuals	NA	5q31.1	NR	rs28716841-C	NR	9E-6		0.8716	NR unit increase	Illumina [4533042] (imputed)	N
1597	chr5	132733466	132733467	rs28716841	30787463	Escala-Garcia M	2019-02-21	Br J Cancer	Genome-wide association study of germline variants and breast cancer-specific mortality.	Breast cancer specific mortality in estrogen receptor negative breast cancer	2,125 European ancestry cases, 14,047 European ancestry controls	NA	5q31.1	NR	rs28716841-?	NR	3E-6		1.3696141	[1.20-1.56]	Affymetrix, Illumina [~ 10400000] (imputed)	N
1597	chr5	132751171	132751172	rs17696621	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5q31.1	HSPA4	rs17696621-?	NR	5E-6	(kynurenine)	0.19768836	[0.11-0.28] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1597	chr5	132759323	132759324	rs29545	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-13 levels	3,557 Finnish ancestry individuals	NA	5q31.1	NR	rs29545-C		6E-6		0.2073	[0.12-0.3] SD units decrease	NR [10700000] (imputed)	N
1597	chr5	132765208	132765209	rs73788091	27622933	Li QS	2016-09-13	Transl Psychiatry	Analysis of 23andMe antidepressant efficacy survey data: implication of circadian rhythm and neuroplasticity in bupropion response.	Non-response to selective serotonin reuptake inhibitors and depression	3,340 European ancestry non-responder cases, 191,882  European ancestry healthy controls	NA	5q31.1	FSTL4	rs73788091-?		1E-6		3.011	[2.044-4.437]	Illumina [~ 12000000] (imputed)	N
1597	chr5	132772430	132772431	rs152784	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	5q31.1	FSTL4	rs152784-A	0.041	2E-6		0.144	NR unit increase	Illumina [NR] (imputed)	N
1598	chr5	132820318	132820319	rs27986	32844198	Dumitrescu L	2020-08-01	Brain	Genetic variants and functional pathways associated with resilience to Alzheimer's disease.	Residual cognitive resilience	5,108 European ancestry individuals (unimpaired cognition, mild cognitive impairment or Alzheimer's disease)	NA	5q31.1	NR	rs27986-?	0.1583	5E-7		0.1117	[0.068-0.155] unit increase	Affymetrix, Illumina [4840740] (imputed)	N
1598	chr5	132820318	132820319	rs27986	30319691	Liu C	2018-09-24	Front Genet	Genome-Wide Association and Mechanistic Studies Indicate That Immune Response Contributes to Alzheimer's Disease Development.	Cognitive impairment test score	235 early mild cognitive impairment cases, 249 late mild cognitive impairment cases, 47 Alzheimer's disease cases, 281 controls.	NA	5q31.1	Intergenic	rs27986-?		3E-6		2.278054	[NR] unit increase	Illumina [575353]	N
1598	chr5	132821595	132821596	rs31325	30319691	Liu C	2018-09-24	Front Genet	Genome-Wide Association and Mechanistic Studies Indicate That Immune Response Contributes to Alzheimer's Disease Development.	Cognitive impairment test score	235 early mild cognitive impairment cases, 249 late mild cognitive impairment cases, 47 Alzheimer's disease cases, 281 controls.	NA		Intergenic	rs31325-?		1E-6		2.302019	[NR] unit increase	Illumina [575353]	N
1599	chr5	132908172	132908172	rs142506392	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	5q31.1	NR	rs142506392-?	NR	8E-6		0.1453	[0.082-0.209] unit decrease	Illumina [11133794] (imputed)	N
1599	chr5	133021850	133021851	rs6596140	22384028	Guo Y	2012-02-24	PLoS One	A genome-wide linkage and association scan reveals novel loci for hypertension and blood pressure traits.	Hypertension	315 Hong Kong Chinese ancestry individuals from 111 families	NA	5q31.1	FSTL4	rs6596140-T	0.34	9E-8				Illumina [503984]	N
1599	chr5	133035922	133035923	rs62373497	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota presence (genus Coprococcus1 id.11301)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	5q31.1		rs62373497-A	NR	1E-8		5.705489	z score decrease	Affymetrix, Illumina [NR] (imputed)	N
1600	chr5	133047774	133047775	rs6596147	30891314	Saad MN	2019-01-18	J Adv Res	Studying the effects of haplotype partitioning methods on the RA-associated genomic results from the North American Rheumatoid Arthritis Consortium (NARAC) dataset.	Rheumatoid arthritis	868 European ancestry cases, 1,194 European ancestry controls	NA	5q31.1	FSTL4, C5orf15	rs6596147-G	0.738	2E-9				NR [509413]	N
1600	chr5	133129950	133129951	rs185894886	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	5q31.1	FSTL4, C5orf15	rs185894886-G	0.01	9E-7	(EA)	0.4512	[0.27-0.63] unit increase	Illumina [~ 9000000] (imputed)	N
1600	chr5	133129950	133129951	rs185894886	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	5q31.1	FSTL4, C5orf15	rs185894886-G	0.01	7E-6		0.3968	[0.23-0.57] unit increase	Illumina [~ 9000000] (imputed)	N
1600	chr5	133134072	133134073	rs139840748	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Intake of total sugars	174,424 European ancestry individuals	NA	5q31.1	snoU13	rs139840748-A	0.01	5E-7		3.49	[2.12-4.86] g/day increase	Affymetrix [10353649] (imputed)	N
1600	chr5	133148293	133148294	rs72791070	31311600	Namjou B	2019-07-17	BMC Med	GWAS and enrichment analyses of non-alcoholic fatty liver disease identify new trait-associated genes and pathways across eMERGE Network.	Aspartate aminotransferase levels in non-alcoholic fatty liver disease	1,075 European ancestry individuals	NA	5q31.1	intergenic	rs72791070-T	0.08473	3E-6		0.347508	[0.2-0.49] unit increase	NR [7263501] (imputed)	N
1600	chr5	133151299	133151300	rs72791073	31712607	Nudel R	2019-11-11	Transl Psychiatry	A large-scale genomic investigation of susceptibility to infection and its association with mental disorders in the Danish population.	Hospital contact for infections	21,728 Danish ancestry cases with psychiatric disorders, 6,744 Danish ancestry cases, 24,161 Danish ancestry controls with psychiatric disorders, 12,901 Danish ancestry controls	NA	5q31.1		rs72791073-A	NR	2E-6		1.1596893	[1.10-1.22]	Illumina [11600722] (imputed)	N
1600	chr5	133155468	133155469	rs4958231	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 3, length of philtrum)	2,187 European ancestry individuals	NA	5q31.1	NR	rs4958231-G	0.3705	2E-6		0.1482	[0.087-0.21] unit increase	Illumina [10677593] (imputed)	N
1601	chr5	133179079	133179080	rs2457174	24529757	Xie T	2014-01-17	Neurobiol Aging	Genome-wide association study combining pathway analysis for typical sporadic amyotrophic lateral sclerosis in Chinese Han populations.	Amyotrophic lateral sclerosis (sporadic)	250 Han Chinese ancestry cases, 250 Han Chinese ancestry controls	NA	5q31.1	C5orf15	rs2457174-?		7E-8				Illumina [859311]	N
1601	chr5	133185534	133185535	rs1703426	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Small cell lung carcinoma	2,664 European ancestry cases,  21,444 European ancestry controls	NA	5q31.1	FSTL4, WSPAR	rs1703426-C	0.825064016	2E-6		1.2045968	[1.12-1.3]	Illumina [10439017] (imputed)	N
1601	chr5	133197337	133197338	rs13175840	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque score in type 2 diabetes	691 African American individuals	205 African American individuals	5q31.1	intergenic	rs13175840-?	NR	1E-6		0.809	[0.35-1.27] unit increase	Illumina [at least 13000000] (imputed)	N
1601	chr5	133201966	133201967	rs2546338	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (90 or 130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	5q31.1	intergenic	rs2546338-?	NR	7E-6		0.128	[0.059-0.197] unit increase	Illumina [at least 13000000] (imputed)	N
1601	chr5	133203595	133203596	rs1644305	18951430	Anney RJ	2008-10-24	Am J Med Genet B Neuropsychiatr Genet	Conduct disorder and ADHD: evaluation of conduct problems as a categorical and quantitative trait in the international multicentre ADHD genetics study.	Attention deficit hyperactivity disorder and conduct disorder	938 European ancestry trios	NA	5q31.1	C5orf15	rs1644305-A	0.41	8E-6				Perlegen [378332]	N
1601	chr5	133229954	133229955	rs11960401	32121467	Adewuyi EO	2020-02-29	Genes (Basel)	Shared Molecular Genetic Mechanisms Underlie Endometriosis and Migraine Comorbidity.	Endometriosis or migraine	17,054 European and Japanese ancestry endometriosis cases, 29,208 European ancestry migraine cases, 191,858 European and Japanese ancestry controls, 172,931 European ancestry controls	NA	5q31.1	NR	rs11960401-C	NR	9E-6	(random effect)	1.09	NR	NR [6904914] (imputed)	N
1601	chr5	133246614	133246615	rs3936585	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5q31.1	VDAC1	rs3936585-?	NR	3E-6	(CE 18:2)	0.44129083	[0.26-0.63] unit increase	Affymetrix [at least 2500000] (imputed)	N
1601	chr5	133268912	133268913	rs58681704	34269803	Casto A	2021-07-16	Blood	Genetic Variants Associated with Cytomegalovirus Infection after Allogeneic Hematopoietic Cell Transplantation.	Cytomegalovirus reactivation after allogeneic hematopoietic cell transplantation (recipients)	up to 1,301 European ancestry recipients	up to 868 European ancestry recipients	5q31.1		rs58681704-?	NR	2E-7		1.43	[1.25-1.63]	Affymetrix, Illumina [29826485] (imputed)	N
1602	chr5	133382455	133382456	rs247459	25608926	Betz RC	2015-01-22	Nat Commun	Genome-wide meta-analysis in alopecia areata resolves HLA associations and reveals two new susceptibility loci.	Alopecia areata	2,332 European ancestry cases and 5,233 European ancestry controls	764 European ancestry cases and 2,256 European ancestry controls	5q31.1	C5orf15, VDAC1	rs247459-T	NR	9E-7		1.21143		Illumina [1233578] (imputed)	N
1602	chr5	133384336	133384337	rs247463	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (multi-trait analysis)	90,939 European ancestry individuals	NA	5q31.1	VDAC1, TCF7	rs247463-T	0.22	7E-12		0.0071	NR unit increase	Affymetrix, Illumina [8002429] (imputed)	N
1602	chr5	133387724	133387725	rs10479064	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5q31.1	VDAC1	rs10479064-?	NR	3E-6	(lactate)	0.6001006	[0.35-0.85] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1602	chr5	133402894	133402895	rs113633047	29109912	Rawofi L	2017-11-02	PeerJ	Genome-wide association study of pigmentary traits (skin and iris color) in individuals of East Asian ancestry.	Iris color (L* coordinate)	377 East Asian ancestry individuals	NA	5q31.1	intergenic	rs113633047-T	0.281652	2E-6		0.418911	[0.25-0.59] unit increase	Illumina [at least 520076] (imputed)	N
1602	chr5	133402910	133402911	rs60111777	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (multi-trait analysis)	90,939 European ancestry individuals	NA	5q31.1	VDAC1, TCF7	rs60111777-C	0.9	5E-14		0.01	NR unit increase	Affymetrix, Illumina [8002429] (imputed)	N
1602	chr5	133419282	133419283	rs244672	32868391	Leng RX	2020-08-31	Ann Rheum Dis	Identification of new susceptibility loci associated with rheumatoid arthritis.	Rheumatoid arthritis	5,900 East Asian cases, 20,521 East Asian controls, 14,361 European ancestry cases, 43,923 European ancestry controls	NA	5q31.1	TCF7	rs244672-C		1E-9		1.09	[1.06-1.13]	Illumina [NR] (imputed)	N
1602	chr5	133419282	133419283	rs244672	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	5q31.1		rs244672-?	NR	5E-14				NR [~ 8900000] (imputed)	N
1602	chr5	133421108	133421109	rs115267018	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	5q31.1	NR	rs115267018-C	0.134	9E-11		0.85	[0.8-0.9]	Illumina [11270530] (imputed)	N
1602	chr5	133421743	133421744	rs244690	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	5q31.1		rs244690-A	NR	3E-17		0.1052	[0.081-0.13] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1602	chr5	133421743	133421744	rs244690	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	5q31.1	TCF7	rs244690-G	0.123038	6E-16		0.11201557	[0.085-0.139] unit increase	Affymetrix [7288503] (imputed)	N
1602	chr5	133422815	133422816	rs244689	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	5q31.1		rs244689-G	0.877388	1E-13		0.025172293	[0.019-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
1602	chr5	133423494	133423495	rs244688	32581359	Saevarsdottir S	2020-06-24	Nature	FLT3 stop mutation increases FLT3 ligand level and risk of autoimmune thyroid disease.	Autoimmune thyroid disease	30,234 European ancestry cases, 724,172 European ancestry controls	NA	5q31.1	TCF7	rs244688-T	0.137	1E-13		1.1	[NR]	Affymetrix, Illumina [42900000] (imputed)	N
1602	chr5	133423889	133423890	rs244685	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hypothyroidism	30,155 European ancestry cases, 379,986 European ancestry controls, 1,114 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	5q31.1		rs244685-G	NR	7E-11		0.0858	[0.06-0.112] unit decrease	Affymetrix, Illumina [25801083] (imputed)	N
1602	chr5	133423889	133423890	rs244685	33310728	Ha E	2020-12-11	Ann Rheum Dis	Large-scale meta-analysis across East Asian and European populations updated genetic architecture and variant-driven biology of rheumatoid arthritis, identifying 11 novel susceptibility loci.	Rheumatoid arthritis	14,361 European ancestry cases, 43,923 European ancestry controls, 8,267 East Asian ancestry cases, 244,741 East Asian ancestry controls	NA	5q31.1		rs244685-T	NR	6E-10		1.09	[1.06-1.12]	NR [13810676] (imputed)	N
1602	chr5	133428600	133428601	rs4388254	27399966	Morris DL	2016-07-11	Nat Genet	Genome-wide association meta-analysis in Chinese and European individuals identifies ten new loci associated with systemic lupus erythematosus.	Systemic lupus erythematosus	1,659 Chinese ancestry cases, 3,398 Chinese ancestry controls, 4,036 European ancestry cases, 6,959 European ancestry controls	3,043 Chinese ancestry cases, 5,074 Chinese ancestry controls, 2,643 European ancestry cases, 9,032 European ancestry controls	5q31.1	TCF7, SKP1	rs4388254-?	0.045	4E-10	(EA)	1.47	[NR]	NR [6344733] (imputed)	N
1602	chr5	133428600	133428601	rs4388254	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	NA	5q31.1	TCF7, SKP1	rs4388254-T		7E-10		1.4	[NR]	Illumina [> 644674] (imputed)	N
1602	chr5	133429191	133429192	rs6874758	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	5q31.1	TCF7	rs6874758-C	0.073	4E-14		1.238	[1.18-1.29]	Illumina [11270530] (imputed)	N
1603	chr5	133431614	133431615	rs244676	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	5q31.1		rs244676-C	0.879478	3E-14		0.026023345	[0.019-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
1603	chr5	133431833	133431834	rs7726414	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	5q31.1	VDAC1, TCF7	rs7726414-?	NR	7E-7		1.19	[1.11-1.27]	Illumina [at least 5000000] (imputed)	N
1603	chr5	133431833	133431834	rs7726414	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	2,018 European ancestry cases, 6,925 European ancestry controls	5q31.1	TCF7, SKP1	rs7726414-T		4E-16		1.45	[1.32-1.58]	Illumina [644674]	N
1603	chr5	133439273	133439274	rs62379371	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	5q31.1		rs62379371-A	NR	9E-9		0.0343	[0.023-0.046] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
1603	chr5	133439273	133439274	rs62379371	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	5q31.1	NR	rs62379371-A	NR	1E-13		0.0441	[0.032-0.056] unit decrease	Affymetrix [9000000] (imputed)	N
1603	chr5	133439273	133439274	rs62379371	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	5q31.1	LOC105379185	rs62379371-G	0.953892	7E-9		1.0861901	[1.05627748437013-1.1169497692306]	NR [9572556] (imputed)	N
1603	chr5	133439273	133439274	rs62379371	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	5q31.1	NR	rs62379371-G	0.95319	6E-14		1.1135857	[1.08-1.14]	Affymetrix [15688218] (imputed)	N
1603	chr5	133439273	133439274	rs62379371	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	5q31.1		rs62379371-?	NR	3E-16				NR [~ 8900000] (imputed)	N
1603	chr5	133446574	133446575	rs756699	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	5q31.1	TCF7	rs756699-A	0.88	9E-11		1.12		Illumina [161311]	N
1603	chr5	133446574	133446575	rs756699	21833088	Sawcer S	2011-08-11	Nature	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	5q31.1	TCF7	rs756699-A	NR	6E-7		1.12	[1.1-1.14]	Illumina [465434]	N
1603	chr5	133447060	133447061	rs2436323	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	5q31.1	NR	rs2436323-T	NR	3E-10		0.0288	[0.02-0.038] unit decrease	Affymetrix [9000000] (imputed)	N
1603	chr5	133449826	133449827	rs244656	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	5q31.1	TCF7	rs244656-A	NR	3E-14		1.1116	NR	Affymetrix, Illumina [8278136] (imputed)	N
1603	chr5	133451682	133451683	rs5742913	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	5q31.1	TCF7	rs5742913-A	0.111879	2E-16		0.02897358	[0.022-0.036] unit increase	Affymetrix [93095623] (imputed)	N
1603	chr5	133451682	133451683	rs5742913	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	5q31.1	TCF7	rs5742913-A	0.111852	9E-19		0.031228742	[0.024-0.038] unit increase	Affymetrix [93095623] (imputed)	N
1603	chr5	133451682	133451683	rs5742913	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	5q31.1	NR	rs5742913-A	0.11124	2E-17		0.026836	[0.021-0.033] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
1603	chr5	133451682	133451683	rs5742913	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	5q31.1		rs5742913-?	NR	1E-16				NR [~ 8900000] (imputed)	N
1603	chr5	133495080	133495080	rs79150294	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	5q31.1	SKP1	rs79150294-CT	0.048852	1E-10		0.033533935	[0.023-0.044] unit increase	Affymetrix [93095623] (imputed)	N
1603	chr5	133551444	133551445	rs13187105	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	5q31.1		rs13187105-?	NR	3E-10				NR [~ 8900000] (imputed)	N
1603	chr5	133552829	133552830	rs146374310	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5q31.1		rs146374310-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1604	chr5	133619965	133619966	rs62381364	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q31.1	NR	rs62381364-T	0.107763	2E-16				Affymetrix, Illumina [19872809] (imputed)	N
1604	chr5	133619965	133619966	rs62381364	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	5q31.1	CDKL3, CTD-2410N18.4	rs62381364-T	0.1129	3E-9		0.03346999	[0.022-0.045] unit increase	Affymetrix [~ 2500000] (imputed)	N
1604	chr5	133660046	133660047	rs112349722	31194736	Tiensuu H	2019-06-13	PLoS Genet	Risk of spontaneous preterm birth and fetal growth associates with fetal SLIT2.	Moderate-to-late spontaneous preterm birth	75 Finnish ancestry infant cases, 419 Finnish ancestry infant controls	NA	5q31.1	CDKL3	rs112349722-?	NR	2E-6		4.77		Illumina [6778521] (imputed)	N
1605	chr5	133714872	133714873	rs138305363	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	5q31.1	NR	rs138305363-A	0.98	4E-8		0.622	[0.45-0.79]	Illumina [11270530] (imputed)	N
1605	chr5	133727051	133727052	rs11538104	30120083	Ferguson A	2018-08-14	EBioMedicine	Genome-Wide Association Study of Circadian Rhythmicity in 71,500 UK Biobank Participants and Polygenic Association with Mood Instability.	Relative amplitude of rest-activity cycles	77,440 European ancestry individuals	NA	5q31.1	UBE2B	rs11538104-?	NR	3E-6		0.007	unit increase	Affymetrix [7969123] (imputed)	N
1605	chr5	133777571	133777572	rs328836	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Putamen volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	5q31.1	NR	rs328836-?		2E-6				Illumina [4322238] (imputed)	N
1605	chr5	133782152	133782153	rs10056003	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid vs negative)	9,913 European ancestry cases, 85,072 European ancestry controls, 2,553 Hispanic or Latin American cases, 13,086 Hispanic or Latin American controls, 506 Black or African American cases, 3,110 Black or African American controls	NA	5q31.1		rs10056003-?	NR	7E-6		0.11624841	[0.066-0.167] unit increase	Illumina [9939936] (imputed)	N
1605	chr5	133807034	133807035	rs113946051	34518958	Sanders AR	2021-09-13	Arch Sex Behav	Genome-Wide Linkage and Association Study of Childhood Gender Nonconformity in Males.	Childhood gender nonconformity	409 European ancestry concordant male sibling pairs	NA	5q31.1		rs113946051-G	0.947	1E-8		0.141	[0.092-0.19] unit decrease	Affymetrix [6030650] (imputed)	N
1605	chr5	133823077	133823078	rs7702415	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	5q31.1		rs7702415-?	NR	5E-11				NR [~ 8900000] (imputed)	N
1606	chr5	133828355	133828356	rs7701346	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 42)	19,670 European ancestry individuals	NA	5q31.1		rs7701346-?	NR	8E-9				NR [9705931] (imputed)	N
1606	chr5	133830394	133830395	rs6871635	33563987	Tyrrell J	2021-02-09	Nat Commun	Genetic predictors of participation in optional components of UK Biobank.	Participation in an health questionnaire (not invited vs invited)	336,633 European ancestry cases, 114,464 European ancestry controls	NA	5q31.1	NR	rs6871635-A	0.437257	9E-9		1.005	[1.003, 1.007]	Affymetrix [39302896] (imputed)	N
1606	chr5	133830394	133830395	rs6871635	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	5q31.1	PHF15	rs6871635-G	0.563166	3E-17		0.025981	[0.02-0.032] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
1606	chr5	133830394	133830395	rs6871635	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	5q31.1		rs6871635-A	0.43	1E-9		0.0087	[0.006-0.0114] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1606	chr5	133832075	133832076	rs67672984	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	5q31.1		rs67672984-?	NR	3E-12				NR [~ 8900000] (imputed)	N
1606	chr5	133836058	133836059	rs34783466	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	5q31.1	RNU6-456P	rs34783466-C	0.584175	1E-20		0.021606684	[0.017-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1606	chr5	133836208	133836209	rs10793821	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	5q31.1	NR	rs10793821-T	NR	3E-17		1.058	[1.04-1.07]	Affymetrix, Illumina [29235255] (imputed)	N
1606	chr5	133836208	133836209	rs10793821	33293427	Emami NC	2020-12-08	Cancer Res	A large-scale association study detects novel rare variants, risk genes, functional elements, and polygenic architecture of prostate cancer susceptibility.	Prostate cancer	14,113 European ancestry cases, 194,140 European ancestry controls	NA	5q31.1	NR	rs10793821-T	NR	1E-7		1.08	NR	Affymetrix [at least 232408] (imputed)	N
1606	chr5	133836208	133836209	rs10793821	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer (advanced)	15,167 European ancestry cases, 58,308 European ancestry controls	NA	5q31.1	RNU6-456P	rs10793821-T	NR	9E-7		1.07	[NR]	Illumina [20370935] (imputed)	N
1606	chr5	133836208	133836209	rs10793821	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	5q31.1	RNU6-456P	rs10793821-T	0.57	5E-11		1.05	[1.04-1.07]	Illumina [20370935] (imputed)	N
1606	chr5	133836293	133836294	rs10900828	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q31.1	NR	rs10900828-G	0.664834	9E-20				Affymetrix, Illumina [24588908] (imputed)	N
1606	chr5	133836293	133836294	rs10900828	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	5q31.1	NR	rs10900828-G	0.582364	5E-21		0.018543	[0.015-0.022] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1606	chr5	133836293	133836294	rs10900828	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q31.1	NR	rs10900828-G	0.589145	9E-38				Affymetrix, Illumina [17210439] (imputed)	N
1606	chr5	133836293	133836294	rs10900828	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	5q31.1	NR	rs10900828-G	0.58136	5E-40		0.026846	[0.023-0.031] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
1606	chr5	133836293	133836294	rs10900828	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	5q31.1	RNU6-456P	rs10900828-G	0.5794	2E-9		0.02231888	[0.015-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1606	chr5	133837020	133837021	rs1476096	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5q31.1	JADE2	rs1476096-A	0.406298	8E-9	(206 ms)	0.0324514	[0.021-0.044] unit increase	Affymetrix [10000000] (imputed)	N
1606	chr5	133837020	133837021	rs1476096	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5q31.1	JADE2	rs1476096-A	0.406298	7E-9	(226 ms)	0.0336128	[0.022-0.045] unit increase	Affymetrix [10000000] (imputed)	N
1606	chr5	133837020	133837021	rs1476096	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5q31.1	JADE2	rs1476096-A	0.406298	6E-9	(208 ms)	0.0335223	[0.022-0.045] unit increase	Affymetrix [10000000] (imputed)	N
1606	chr5	133837020	133837021	rs1476096	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5q31.1	JADE2	rs1476096-A	0.406298	4E-9	(212 ms)	0.0339786	[0.023-0.045] unit increase	Affymetrix [10000000] (imputed)	N
1606	chr5	133837020	133837021	rs1476096	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5q31.1	JADE2	rs1476096-A	0.406298	3E-8	(222 ms)	0.0331896	[0.022-0.044] unit increase	Affymetrix [10000000] (imputed)	N
1606	chr5	133837020	133837021	rs1476096	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5q31.1	JADE2	rs1476096-A	0.406298	2E-9	(230 ms)	0.0342971	[0.023-0.045] unit increase	Affymetrix [10000000] (imputed)	N
1606	chr5	133837020	133837021	rs1476096	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5q31.1	JADE2	rs1476096-A	0.406298	2E-9	(228 ms)	0.0346561	[0.023-0.046] unit increase	Affymetrix [10000000] (imputed)	N
1606	chr5	133837020	133837021	rs1476096	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5q31.1	JADE2	rs1476096-A	0.406298	2E-9	(210 ms)	0.0341651	[0.023-0.045] unit increase	Affymetrix [10000000] (imputed)	N
1606	chr5	133837020	133837021	rs1476096	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5q31.1	JADE2	rs1476096-A	0.406298	2E-8	(224 ms)	0.032793	[0.022-0.044] unit increase	Affymetrix [10000000] (imputed)	N
1606	chr5	133837020	133837021	rs1476096	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5q31.1	JADE2	rs1476096-A	0.406298	2E-8	(220 ms)	0.032892	[0.022-0.044] unit increase	Affymetrix [10000000] (imputed)	N
1606	chr5	133837020	133837021	rs1476096	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5q31.1	JADE2	rs1476096-A	0.406298	2E-8	(202 ms)	0.0321287	[0.021-0.043] unit increase	Affymetrix [10000000] (imputed)	N
1606	chr5	133837020	133837021	rs1476096	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5q31.1	JADE2	rs1476096-A	0.406298	1E-8	(214 ms)	0.0331322	[0.022-0.044] unit increase	Affymetrix [10000000] (imputed)	N
1606	chr5	133837020	133837021	rs1476096	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5q31.1	JADE2	rs1476096-A	0.406298	1E-8	(200 ms)	0.0321619	[0.021-0.043] unit increase	Affymetrix [10000000] (imputed)	N
1606	chr5	133837020	133837021	rs1476096	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	5q31.1	RNU6-456P	rs1476096-C	0.581927	1E-84		0.04486988	[0.04-0.049] unit decrease	Affymetrix [93095623] (imputed)	N
1606	chr5	133837020	133837021	rs1476096	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	5q31.1	RNU6-456P	rs1476096-C	0.581889	3E-30		0.026226683	[0.022-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
1606	chr5	133837020	133837021	rs1476096	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	5q31.1	TANK, PSMD14, TBR1	rs1476096-?		5E-16				NR [7428630] (imputed)	N
1606	chr5	133837020	133837021	rs1476096	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	5q31.1	JADE2	rs1476096-?		3E-11				NR [7428630] (imputed)	N
1606	chr5	133837060	133837061	rs1476097	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5q31.1		rs1476097-?	NR	1E-17				NR [~ 8900000] (imputed)	N
1606	chr5	133838179	133838180	rs1981627	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	5q31.1	PHF15	rs1981627-G	0.584748	8E-11		0.017083	[0.012-0.022] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1606	chr5	133839270	133839271	rs34989027	33563987	Tyrrell J	2021-02-09	Nat Commun	Genetic predictors of participation in optional components of UK Biobank.	Acceptance of an invitation to participate in a mental health questionnaire	146,074 European ancestry cases, 148,713 European ancestry controls	NA	5q31.1	NR	rs34989027-C	0.82	4E-8		0.97	[0.96, 0.98]	Affymetrix [39302896] (imputed)	N
1606	chr5	133840733	133840734	rs9790905	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	5q31.1	AC005355.2	rs9790905-G	NR	5E-9		0.02332	[0.016-0.031] unit increase	Affymetrix [321788] (imputed)	N
1606	chr5	133845111	133845112	rs6877546	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	5q31.1	AC005355.2	rs6877546-C	NR	2E-15		0.0304879	[0.023-0.038] unit increase	Affymetrix [321016] (imputed)	N
1606	chr5	133845379	133845380	rs4958244	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Prostate cancer	11,599 European ancestry cases, 199,628 European ancestry controls, 5,672 East Asian ancestry cases, 84,660 East Asian ancestry controls	NA	5q31.1		rs4958244-G	NR	6E-9		0.0807	[0.054-0.108] unit increase	Affymetrix, Illumina [25775424] (imputed)	N
1606	chr5	133848518	133848519	rs72798639	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	5q31.1	AC005355.2	rs72798639-T	NR	3E-8		0.0302162	[0.02-0.041] unit increase	Affymetrix [321016] (imputed)	N
1606	chr5	133848687	133848688	rs11242218	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	5q31.1	NR	rs11242218-?	NR	2E-8	(left accumbens area)			NR [9227495] (imputed)	N
1606	chr5	133848715	133848716	rs66914325	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	5q31.1		rs66914325-G	NR	4E-12		0.0162	[0.012-0.021] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1606	chr5	133848759	133848760	rs11242219	31097437	Plotnikov D	2019-05-16	Br J Ophthalmol	Association between birth weight and refractive error in adulthood: a Mendelian randomisation study.	Birth weight	188,039 European ancestry individuals	NA	5q31.1	NR	rs11242219-A	0.41	1E-10		0.021	[0.015-0.027] z score decrease	Affymetrix [up to 10400000] (imputed)	N
1606	chr5	133848916	133848917	rs10900829	33290408	Ray D	2020-12-08	PLoS Genet	A powerful method for pleiotropic analysis under composite null hypothesis identifies novel shared loci between Type 2 Diabetes and Prostate Cancer.	Type 2 diabetes or prostate cancer (pleiotropy)	62,892 European ancestry T2D cases, 79,194 European ancestry PrCa cases, 659,536 European ancestry controls	NA	5q31.1	AC005355.2	rs10900829-?		5E-10				Illumina [5041948] (imputed)	N
1606	chr5	133848916	133848917	rs10900829	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Prostate cancer	10,792 European ancestry cases, 410,350 European ancestry controls	NA	5q31.1		rs10900829-G	NR	3E-7		1.0786322	NR	Affymetrix [7846216] (imputed)	N
1606	chr5	133849176	133849177	rs13187289	21102462	Elks CE	2010-11-21	Nat Genet	Thirty new loci for age at menarche identified by a meta-analysis of genome-wide association studies.	Menarche (age at onset)	86,142 European ancestry female individuals, 557 Old Order Amish (founder/genetic isolate) female individuals, 1,103 Erasmus Rucphen (founder/genetic isolate) female individuals	Up to 12,813 European ancestry female individuals, 910 Val Borbera (founder/genetic isolate) female individuals, 348 Orcadian (founder/genetic isolate) female individuals, 338 Friuli Venezia Giulia (founder/genetic isolate) female individuals, 322 Carlantino (founder/genetic/isolate) female individuals	5q31.1	PHF15	rs13187289-G	0.20	2E-10		3.0	[2.02-3.98] week increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1606	chr5	133850621	133850622	rs11948454	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	5q31.1	RN7SL541P	rs11948454-A	NR	9E-11		0.0193237	[0.013-0.025] unit increase	Affymetrix [321016] (imputed)	N
1606	chr5	133853020	133853021	rs614508	31263887	Adams MJ	2019-07-01	Int J Epidemiol	Factors associated with sharing e-mail information and mental health survey participation in large population cohorts.	Mental health study participation (completed survey)	122,647 British ancestry cases, 248,781 British ancestry controls	NA	5q31.1	RN7SL541P	rs614508-A	NR	3E-8		0.0066477	[0.0043-0.009] unit increase	NR [16367095] (imputed)	N
1606	chr5	133860100	133860101	rs329117	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	5q31.1	JADE2	rs329117-C	0.582468	8E-11		0.014577624	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
1606	chr5	133861662	133861663	rs329118	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	5q31.1		rs329118-T	NR	8E-15		0.013	[0.0097-0.0163] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1606	chr5	133861662	133861663	rs329118	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	5q31.1		rs329118-T	NR	5E-20		0.0176	[0.014-0.021] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1606	chr5	133861662	133861663	rs329118	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	5q31.1	NR	rs329118-C	0.5849	2E-13		0.0281	[0.021-0.036] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1606	chr5	133861662	133861663	rs329118	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		5q31.1	JADE2	rs329118-C	0.580515	9E-12		0.00948808	[0.0068-0.0122] unit increase	Affymetrix [12370749]	N
1606	chr5	133861662	133861663	rs329118	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Cigarettes smoked per day (MTAG)	up to 403,928 European ancestry individuals	NA	5q31.1	NR	rs329118-T	0.426	4E-8		0.0120861	[0.0078-0.0164] unit decrease	NR [9732723] (imputed)	N
1606	chr5	133861662	133861663	rs329118	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	5q31.1	NR	rs329118-T	0.425	1E-8		0.008357	[0.0055-0.0112] unit increase	NR [9732723] (imputed)	N
1606	chr5	133861755	133861756	rs329120	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	5q31.1		rs329120-T	NR	4E-9		0.0097	[0.0066-0.0128] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
1606	chr5	133861755	133861756	rs329120	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking cessation	450,129 European ancestry individuals	NA	5q31.1	JADE2	rs329120-C		3E-8		1.026	[NR]	Affymetrix [up to 79000000] (imputed)	N
1606	chr5	133861755	133861756	rs329120	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	5q31.1	NR	rs329120-C	0.581095	2E-27		0.00907848	[0.0074-0.0107] unit increase	Affymetrix [16582909] (imputed)	N
1606	chr5	133861755	133861756	rs329120	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	5q31.1	NR	rs329120-C	0.581095	6E-11		0.00594388	[0.0041-0.0078] unit increase	Affymetrix [16582965] (imputed)	N
1606	chr5	133861755	133861756	rs329120	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	5q31.1	JADE2	rs329120-T	0.4166	7E-11		0.013368573	[0.0094-0.0174] unit increase	Affymetrix [up to 18485882] (imputed)	N
1606	chr5	133861755	133861756	rs329120	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	5q31.1		rs329120-C	0.581	6E-12		0.014	[0.01-0.018] unit increase	Affymetrix [up to 90000000] (imputed)	N
1606	chr5	133861755	133861756	rs329120	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking cessation (MTAG)	up to 820,192 European ancestry individuals	NA	5q31.1	NR	rs329120-T	0.424	2E-13		0.0114057	[0.0084-0.0144] unit decrease	NR [9732723] (imputed)	N
1606	chr5	133861755	133861756	rs329120	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	5q31.1	NA	rs329120-T	0.4104	5E-15		0.0138	[0.01-0.017] unit decrease	NR [~ 27400000] (imputed)	N
1606	chr5	133861755	133861756	rs329120	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	5q31.1		rs329120-T	0.425	1E-9	(conditional-joint)	0.0087	[0.006-0.0114] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1606	chr5	133861755	133861756	rs329120	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	5q31.1	JADE2	rs329120-T	0.418	2E-8		0.002	[0.0014-0.0026] unit increase	Affymetrix [15275733] (imputed)	N
1606	chr5	133861755	133861756	rs329120	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	5q31.1	JADE2	rs329120-T	0.372	4E-8	(Japanese)	0.019	[0.011-0.027] unit decrease	Illumina [6108953] (imputed)	N
1606	chr5	133863351	133863352	rs329121	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	5q31.1	JADE2	rs329121-C	0.580843	2E-9		0.013460061	[0.0091-0.0179] unit increase	Affymetrix [93095623] (imputed)	N
1606	chr5	133863351	133863352	rs329121	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	5q31.1	JADE2	rs329121-C	0.5797	6E-22		0.03516663	[0.028-0.042] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1606	chr5	133864598	133864599	rs329122	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	5q31.1	NR	rs329122-G	0.5729	1E-8		0.0264	[0.017-0.035] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
1606	chr5	133864598	133864599	rs329122	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	5q31.1	PHF15	rs329122-A	0.387	2E-8		1.04	[1.03-1.05]	Affymetrix, Illumina [11800000] (imputed)	N
1606	chr5	133864598	133864599	rs329122	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	5q31.1	NR	rs329122-G	0.580823	3E-9		0.017745	[0.012-0.024] unit increase	Affymetrix [16577313] (imputed)	N
1606	chr5	133864598	133864599	rs329122	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	5q31.1	NR	rs329122-G	0.580637	2E-14		0.00840037	[0.0061-0.0107] unit increase	Affymetrix [16582621] (imputed)	N
1606	chr5	133864598	133864599	rs329122	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	5q31.1	NR	rs329122-G	0.580637	5E-7		0.00613147	[0.0037-0.0086] unit increase	Affymetrix [16582614] (imputed)	N
1606	chr5	133864598	133864599	rs329122	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	5q31.1	PHF15	rs329122-A	0.4286	4E-9		1.04	[1.03-1.05]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1606	chr5	133864598	133864599	rs329122	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	5q31.1	JADE2	rs329122-A	0.43	6E-8		0.013	[0.0091-0.0169] unit decrease	Illumina [6108953] (imputed)	N
1606	chr5	133864598	133864599	rs329122	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	5q31.1	PHF15, JADE2	rs329122-A	0.43	3E-9		1.04	[1.03-1.06]	Affymetrix, Illumina [NR] (imputed)	N
1606	chr5	133864598	133864599	rs329122	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	5q31.1	PHF15, JADE2	rs329122-A	0.4274	6E-6	(EA)	0.0454	[0.026-0.065] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1606	chr5	133865451	133865452	rs329124	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	163,835 East Asian ancestry individuals	NA	5q31.1		rs329124-G	0.380129	1E-8		0.0188056	[0.012-0.025] unit decrease	Illumina [13479178] (imputed)	N
1606	chr5	133865451	133865452	rs329124	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	5q31.1	NR	rs329124-?	NR	6E-16				Affymetrix [~ 8270000] (imputed)	N
1606	chr5	133865451	133865452	rs329124	31263887	Adams MJ	2019-07-01	Int J Epidemiol	Factors associated with sharing e-mail information and mental health survey participation in large population cohorts.	Mental health study participation (completed survey)	122,647 British ancestry cases, 248,781 British ancestry controls	NA	5q31.1	JADE2	rs329124-G	NR	9E-9		0.0062847	[0.0041-0.0084] unit increase	NR [16367095] (imputed)	N
1606	chr5	133865451	133865452	rs329124	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Coffee consumption	335,909 European ancestry individuals	39,924 European ancestry individuals	5q31.1	JADE2	rs329124-A	0.5794	3E-6		0.007	[0.0041-0.0099] unit increase	Affymetrix [~ 7740000] (imputed)	N
1606	chr5	133865451	133865452	rs329124	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	5q31.1	NR	rs329124-G	0.428	1E-14		0.00843742	[0.0063-0.0106] unit decrease	NR [9732723] (imputed)	N
1606	chr5	133865451	133865452	rs329124	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	5q31.1	NR	rs329124-G	0.428	2E-10		0.016387068	[0.011-0.021] unit decrease	NR [~ 10000000] (imputed)	N
1606	chr5	133865451	133865452	rs329124	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	5q31.1		rs329124-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1606	chr5	133865451	133865452	rs329124	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	5q31.1		rs329124-?	NR	2E-15				NR [~ 8900000] (imputed)	N
1606	chr5	133865451	133865452	rs329124	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	5q31.1	NA	rs329124-A	0.5893	4E-15		0.0135	[0.01-0.017] unit increase	NR [~ 27400000] (imputed)	N
1606	chr5	133865451	133865452	rs329124	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	5q31.1	Intergenic	rs329124-A	0.5733	2E-9	(MTAG)	0.008	[0.0055-0.0105] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1606	chr5	133867867	133867867	rs146681214	31263887	Adams MJ	2019-07-01	Int J Epidemiol	Factors associated with sharing e-mail information and mental health survey participation in large population cohorts.	Mental health study participation (completed survey)	122,647 British ancestry cases, 248,781 British ancestry controls	NA	5q31.1	JADE2	rs146681214-AC	0.18	4E-9		0.0084185	[0.0056-0.0112] unit increase	NR [16367095] (imputed)	N
1606	chr5	133869269	133869270	rs620498	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	5q31.1	JADE2	rs620498-G	0.160053	3E-15		0.02414351	[0.018-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
1606	chr5	133870738	133870739	rs7738043	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	5q31.1		rs7738043-C	NR	8E-10		0.0114	[0.0079-0.0149] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
1606	chr5	133871100	133871101	rs329125	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	5q31.1	JADE2	rs329125-A	0.208557	8E-10		0.016920794	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1606	chr5	133871100	133871101	rs329125	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q31.1	NR	rs329125-A	0.258632	4E-10				Affymetrix, Illumina [23467995] (imputed)	N
1606	chr5	133871100	133871101	rs329125	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	5q31.1	NR	rs329125-A	0.207081	1E-12		0.016638	[0.012-0.021] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1606	chr5	133875032	133875033	rs11242222	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first birth	542,901 European ancestry individuals	NA	5q31.1	JADE2	rs11242222-A	0.7894	2E-8		0.0686	[0.045-0.093] unit decrease	NR [9744772] (imputed)	N
1606	chr5	133889052	133889052	rs112223848	31263887	Adams MJ	2019-07-01	Int J Epidemiol	Factors associated with sharing e-mail information and mental health survey participation in large population cohorts.	Mental health study participation (completed survey)	122,647 British ancestry cases, 248,781 British ancestry controls	NA	5q31.1	JADE2	rs112223848-CT	NR	2E-8		0.0074405	[0.0048-0.01] unit decrease	NR [16367095] (imputed)	N
1606	chr5	133891281	133891282	rs2084007	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	5q31.1	JADE2	rs2084007-C	NR	2E-13		1.0835	NR	Affymetrix, Illumina [8278136] (imputed)	N
1606	chr5	133897438	133897439	rs35096828	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	5q31.1		rs35096828-C	NR	1E-18		0.0233	[0.018-0.028] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
1606	chr5	133898135	133898136	rs10056247	27798627	Barban N	2016-10-31	Nat Genet	Genome-wide analysis identifies 12 loci influencing human reproductive behavior.	Age at first birth	189,656 European ancestry women, 48,408 European ancestry men		5q31.1	JADE2	rs10056247-T	0.289	4E-8		0.082	NR unit increase	Illumina [2400000] (imputed)	N
1606	chr5	133898135	133898136	rs10056247	27798627	Barban N	2016-10-31	Nat Genet	Genome-wide analysis identifies 12 loci influencing human reproductive behavior.	Age at first birth	189,656 European ancestry women		5q31.1	JADE2	rs10056247-T	0.289	1E-7		0.089	NR unit increase	Illumina [2400000] (imputed)	N
1606	chr5	133899871	133899872	rs2241699	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	5q31.1		rs2241699-G	0.733	9E-9		0.007	[0.005-0.009] unit increase	NR [NR] (imputed)	N
1606	chr5	133900512	133900513	rs13179411	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	5q31.1		rs13179411-?	NR	3E-34				NR [~ 8900000] (imputed)	N
1606	chr5	133900512	133900513	rs13179411	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	5q31.1	PHF15, TCF7	rs13179411-T	0.17	3E-20		0.06	[0.046-0.074] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
1606	chr5	133900575	133900576	rs4958191	31263887	Adams MJ	2019-07-01	Int J Epidemiol	Factors associated with sharing e-mail information and mental health survey participation in large population cohorts.	Mental health study participation (completed survey)	122,647 British ancestry cases, 248,781 British ancestry controls	NA	5q31.1	JADE2	rs4958191-G	NR	8E-9		0.0069574	[0.0046-0.0093] unit increase	NR [16367095] (imputed)	N
1606	chr5	133904596	133904597	rs12519940	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	5q31.1	NR	rs12519940-T	0.2785	4E-20		0.002307	[0.0018-0.0028] unit decrease	Affymetrix [NR] (imputed)	N
1606	chr5	133905828	133905829	rs13178130	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Menarche (age at onset)	76,831 European ancestry individuals	NA	5q31.1	PHF15	rs13178130-?	NR	4E-8		0.025	[0.016-0.034] unit increase	Illumina [12039492]	N
1606	chr5	133906608	133906609	rs329319	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Bipolar disorder (MTAG)	65,682 individuals	NA	5q31.1	NR	rs329319-?		2E-8				NR [520857]	N
1606	chr5	133906608	133906609	rs329319	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Bipolar disorder	41,653 individuals	NA	5q31.1	NR	rs329319-?		2E-8				NR [8956949]	N
1606	chr5	133906608	133906609	rs329319	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	5q31.1	PHF15, SAR1B	rs329319-A	0.428	2E-7		1.0612	[1.04-1.08]	NR [9372253] (imputed)	N
1606	chr5	133915968	133915969	rs62379978	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (late vs. average onset voice breaking)	11,334 European ancestry late onset individuals, 172,138 European ancestry average onset individuals	NA	5q31.1		rs62379978-G	NR	5E-6		0.00506808	[0.0029-0.0073] years increase	NR [7400000] (imputed)	N
1606	chr5	133915968	133915969	rs62379978	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (early vs. average onset voice breaking)	8,245 European ancestry early onset individuals, 172,138 European ancestry average onset individuals	NA	5q31.1		rs62379978-G	NR	3E-6		0.00449507	[0.0026-0.0064] years decrease	NR [7400000] (imputed)	N
1606	chr5	133915968	133915969	rs62379978	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (early vs. average onset facial hair)	13,226 European ancestry early onset individuals, 161,175 European ancestry average onset individuals	NA	5q31.1		rs62379978-G	NR	5E-6		0.00566321	[0.0032-0.0081] years decrease	NR [7400000] (imputed)	N
1606	chr5	133915968	133915969	rs62379978	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (age at voice breaking MTAG)	205,354 European ancestry individuals	NA	5q31.1		rs62379978-G	NR	7E-17		0.036307074	[0.028-0.045] years increase	NR [7400000] (imputed)	N
1606	chr5	133953708	133953708	rs35307903	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	5q31.1	SAR1B	rs35307903-AT	NR	1E-8		0.0258324	[0.017-0.035] unit decrease	Affymetrix [323123] (imputed)	N
1608	chr5	134126802	134126803	rs13154718	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5q31.1		rs13154718-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1608	chr5	134140838	134140839	rs254711	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 1 levels	252 European ancestry individuals	NA	5q31.1		rs254711-C	NR	5E-6		7.0701	[4.11-10.03] unit increase	Illumina [NR] (imputed)	N
1608	chr5	134199104	134199105	rs11950533	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	5q31.1	C5orf24	rs11950533-A	0.102	7E-9		0.0916	[0.061-0.123] unit decrease	NR [7784415] (imputed)	N
1609	chr5	134223592	134223593	rs3733897	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TXNDC15	5,352 Icelandic ancestry individuals	NA	5q31.1		rs3733897-G	0.1235	2E-26		0.287097	[0.23-0.34] unit increase	Illumina [7506463] (imputed)	N
1609	chr5	134223592	134223593	rs3733897	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	5q31.1	NR	rs3733897-A	0.866116	4E-9		0.0250318	[0.016-0.034] unit increase	Affymetrix [16577424] (imputed)	N
1609	chr5	134240234	134240235	rs319598	24509480	Mahajan A	2014-02-09	Nat Genet	Genome-wide trans-ancestry meta-analysis provides insight into the genetic architecture of type 2 diabetes susceptibility.	Type 2 diabetes	12,171 European ancestry cases, 56,862 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls	21,491 European ancestry cases, 55,647 European ancestry controls	5q31.1	PCBD2	rs319598-C		2E-6		1.05	[1.03-1.07]	Affymetrix, Illumina [2500000] (imputed)	N
1609	chr5	134250595	134250596	rs78165052	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	5q31.1	TXNDC15	rs78165052-C	0.87453125	4E-17	(TXNDC15, 6366_38_3)	0.3074065	[0.24-0.38] unit decrease	Illumina [> 1000000] (imputed)	N
1609	chr5	134262724	134262725	rs528755197	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5q31.1		rs528755197-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1609	chr5	134321064	134321065	rs299361	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 1 levels	252 European ancestry individuals	NA	5q31.1		rs299361-A	NR	7E-6		7.2863	[4.17-10.4] unit decrease	Illumina [NR] (imputed)	N
1609	chr5	134321545	134321546	rs299362	23568457	Wade TD	2013-04-09	Int J Eat Disord	Genetic variants associated with disordered eating.	Bulimia nervosa	151 European ancestry female cases, 2,291 European ancestry female controls	NA	5q31.1	CATSPER3, PCBD2, PITX1	rs299362-A	0.886	3E-6		0.062	[0.037-0.087] unit decrease	Illumina [6150213] (imputed)	N
1609	chr5	134330459	134330459	rs140081012	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		PCBD2	rs140081012-?	NR	9E-9		1.44974	[NR] unit increase	Affymetrix [NR] (imputed)	N
1609	chr5	134330459	134330459	rs140081012	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		PCBD2	rs140081012-?	NR	3E-8	(female)	1.26061	[NR] unit increase	Affymetrix [NR] (imputed)	N
1609	chr5	134339714	134339715	rs299371	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	5q31.1	CATSPER3	rs299371-T	0.695014	1E-16		0.0166665	[0.013-0.021] unit decrease	NR [13737936] (imputed)	N
1609	chr5	134339714	134339715	rs299371	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	5q31.1	PCBD2, CATSPER3	rs299371-T	0.6927	9E-11		0.0473	[0.033-0.062] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1609	chr5	134343468	134343469	rs177251	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	5q31.1		rs177251-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1609	chr5	134343660	134343661	rs10044000	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	5q31.1	CATSPER3	rs10044000-T	0.4049	8E-6		0.0371	[0.021-0.053] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1609	chr5	134348702	134348703	rs537930	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	5q31.1	CATSPER3	rs537930-T	0.28	9E-9		0.035	[0.021-0.049] unit decrease	Affymetrix, Illumina [2704730] (imputed)	N
1610	chr5	134351469	134351470	rs31203	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	5q31.1		rs31203-C	NR	4E-53		0.0207	[0.018-0.023] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1610	chr5	134353733	134353734	rs503035	29782485	Rueger S	2018-05-21	PLoS Genet	Evaluation and application of summary statistic imputation to discover new height-associated loci.	Height	253,288 European ancestry individuals	336,474 European ancestry individuals	5q31.1	intergenic	rs503035-G	0.303887860354403	5E-39		0.022520207	unit decrease	NR [9276018] (imputed)	N
1610	chr5	134356060	134356061	rs72800392	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	5q31.1	PITX1	rs72800392-T	NR	2E-14		0.0255869	[0.019-0.032] unit decrease	Affymetrix [323123] (imputed)	N
1610	chr5	134356114	134356115	rs658556	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	5q31.1	PITX1	rs658556-A	NR	2E-14		0.0238645	[0.018-0.03] unit decrease	Affymetrix [323123] (imputed)	N
1610	chr5	134356157	134356158	rs658621	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	5q31.1		rs658621-C	0.604683	7E-15		0.0159931	[0.012-0.02] unit decrease	Illumina [13479295] (imputed)	N
1610	chr5	134356157	134356158	rs658621	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	5q31.1	CATSPER3, PITX1	rs658621-?	NR	8E-18		0.025070421	[0.019-0.031] unit decrease	Illumina [27896057] (imputed)	N
1610	chr5	134356704	134356705	rs526896	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	5q31.1	PITX1	rs526896-T	0.48	5E-7		0.036	[0.022-0.05] unit increase	Affymetrix, Illumina [2704730] (imputed)	N
1610	chr5	134356704	134356705	rs526896	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	5q31.1	PITX1	rs526896-T	0.72	9E-10		1.15	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
1610	chr5	134356704	134356705	rs526896	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	5q31.1	PITX1	rs526896-T	0.73	2E-13		0.03	[NR] unit increase	Affymetrix, Illumina [2834208] (imputed)	N
1610	chr5	134360430	134360431	rs31209	29237688	Weng LC	2017-12-01	Circ Cardiovasc Genet	Heritability of Atrial Fibrillation.	Atrial fibrillation	2,987 European ancestry cases, 117,299 European ancestry controls	NA	5q31.1	PITX1	rs31209-A	0.62	2E-8		1.17	[1.11-1.24]	Affymetrix [8325606] (imputed)	N
1610	chr5	134363144	134363145	rs31211	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5q31.1		rs31211-?	NR	3E-84				NR [~ 8900000] (imputed)	N
1610	chr5	134363144	134363145	rs31211	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	5q31.1		rs31211-?	NR	7E-17				NR [~ 8900000] (imputed)	N
1610	chr5	134363144	134363145	rs31211	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	5q31.1		rs31211-?	NR	3E-13		0.0174344	[0.013-0.022] unit decrease	Affymetrix [20259828] (imputed)	N
1610	chr5	134366199	134366200	rs3805663	28604732	Wang Z	2017-06-12	Nat Genet	Meta-analysis of five genome-wide association studies identifies multiple new loci associated with testicular germ cell tumor.	Testicular germ cell tumor	3,558 European ancestry cases, 13,970 European ancestry controls	NA	5q31.1	CATSPER3, PITX1, AK026965	rs3805663-G	0.39	9E-6		1.1363636	[1.08-1.20]	Illumina [9210350] (imputed)	N
1610	chr5	134366199	134366200	rs3805663	23666240	Ruark E	2013-05-12	Nat Genet	Identification of nine new susceptibility loci for testicular cancer, including variants near DAZL and PRDM14.	Testicular germ cell tumor	986 European ancestry cases, 4,946 European ancestry controls	1,064 European ancestry cases, 10,082 European ancestry controls	5q31.1	CATSPER3, PITX1	rs3805663-T	0.63	2E-8		1.25	[1.13-1.38]	Illumina [307291]	N
1610	chr5	134366872	134366873	rs10041469	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	5q31.1	NR	rs10041469-G	NR	2E-11		0.0242	[0.017-0.031] unit increase	Affymetrix [9000000] (imputed)	N
1610	chr5	134372684	134372685	rs31198	18391951	Gudbjartsson DF	2008-04-06	Nat Genet	Many sequence variants affecting diversity of adult human height.	Height	30,968 European ancestry individuals	8,541 European ancestry individuals	5q31.1	DDX46, CAMLG, CATSPER3, PCBD2, PITX1, TXNDC15	rs31198-T	0.75	8E-6		4.8	[2.64-6.96] % s.d. increase	Affymetrix, Illumina [up to 304226]	N
1610	chr5	134374107	134374108	rs4976261	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	5q31.1	PITX1	rs4976261-C	0.2499	9E-43		0.0298	[0.025-0.034] unit decrease	Affymetrix [18391927] (imputed)	N
1610	chr5	134379310	134379311	rs39881	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	5q31.1	C5orf66	rs39881-C	NR	2E-8		0.0190792	[0.012-0.026] unit increase	Affymetrix [321016] (imputed)	N
1610	chr5	134382148	134382149	rs62380058	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	5q31.1	C5orf66	rs62380058-A	NR	4E-8		0.0308689	[0.02-0.042] unit increase	Affymetrix [321016] (imputed)	N
1610	chr5	134398345	134398345	rs140814212	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	5q31.1	C5orf66	rs140814212-AAAT	NR	1E-9		0.0190288	[0.013-0.025] unit increase	Affymetrix [319769] (imputed)	N
1610	chr5	134398345	134398345	rs140814212	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	5q31.1	C5orf66	rs140814212-AAAT	NR	2E-9		0.0188027	[0.013-0.025] unit increase	Affymetrix [319769] (imputed)	N
1610	chr5	134398345	134398345	rs140814212	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	5q31.1	C5orf66	rs140814212-AAAT	NR	2E-22		0.0315728	[0.025-0.038] unit decrease	Affymetrix [321788] (imputed)	N
1610	chr5	134398345	134398345	rs140814212	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	5q31.1	C5orf66	rs140814212-AAAT	NR	4E-19		0.0278419	[0.022-0.034] unit decrease	Affymetrix [321016] (imputed)	N
1610	chr5	134404153	134404154	rs4976265	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	5q31.1		rs4976265-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1610	chr5	134409320	134409321	rs888678	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	5q31.1	C5orf66	rs888678-G	NR	5E-15		0.0226578	[0.017-0.028] unit increase	Affymetrix [321016] (imputed)	N
1610	chr5	134409320	134409321	rs888678	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	5q31.1	C5orf66	rs888678-G	NR	2E-8		0.0177352	[0.012-0.024] unit increase	Affymetrix [323123] (imputed)	N
1610	chr5	134410968	134410969	rs5871550	34748635	Miranda JP	2021-11-08	J Clin Endocrinol Metab	Genome-Wide Association Study And Polygenic Risk Scores Of Serum Dheas Levels In A Chilean Children Cohort.	DHEAS levels	788 Hispanic or Latin American individuals	NA	5q31.1	PITX1	rs5871550-C	0.285	2E-6		0.07	unit decrease	Illumina [5510858] (imputed)	N
1610	chr5	134414621	134414622	rs2456162	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	5q31.1	NR	rs2456162-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
1610	chr5	134440425	134440426	rs254563	29471430	Tanikawa C	2018-02-17	Carcinogenesis	GWAS Identifies Two Novel Colorectal Cancer Loci at 16q24.1 and 20q13.12.	Colorectal cancer	6,692 Japanese ancestry cases, 27,178 Japanese ancestry controls	3,713 Japanese ancestry cases, 7,333 Japanese ancestry controls	5q31.1	NR	rs254563-A	NR	1E-9		1.1160713	[1.08-1.16]	Illumina [6774630] (imputed)	N
1610	chr5	134441456	134441457	rs254562	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	5q31.1	NR	rs254562-?	NR	3E-10	(EA)			Affymetrix, Illumina [~ 9000000] (imputed)	N
1610	chr5	134443605	134443606	rs254560	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	5q31.1		rs254560-A	NR	2E-9		0.0128	[0.0087-0.0169] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
1610	chr5	134443605	134443606	rs254560	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Ulcerative colitis	12,366 European and unknown ancestry cases, 33,609 European and unknown ancestry controls	NA	5q31.1	C5orf66	rs254560-?		3E-8				Illumina [9578670] (imputed)	N
1610	chr5	134443605	134443606	rs254560	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	5q31.1	C5orf66	rs254560-?		2E-6				Illumina [9725440] (imputed)	N
1610	chr5	134443605	134443606	rs254560	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	5q31.1	NR	rs254560-A	0.4024	4E-10	(EA)	1.0823938	[1.06-1.11]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1610	chr5	134443605	134443606	rs254560	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	5q31.1	NR	rs254560-A	0.4024	9E-10	(EA)	1.0634166	[1.04-1.08]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1610	chr5	134443605	134443606	rs254560	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Ulcerative colitis	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls	5q31.1	intergenic	rs254560-A	0.397	3E-9		1.056	[1.019-1.093]	Affymetrix, Illumina [1230000] (imputed)	N
1610	chr5	134443605	134443606	rs254560	21297633	Anderson CA	2011-02-06	Nat Genet	Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47.	Ulcerative colitis	6,687 European ancestry cases, 19,718 European ancestry controls	9,628 European ancestry cases, 12,917 European ancestry controls	5q31.1	intergenic	rs254560-A	0.40	1E-9		1.07	[1.03-1.12]	Affymetrix, Illumina [~ 1100000] (imputed)	N
1610	chr5	134444981	134444982	rs254559	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	5q31.1	C5orf66	rs254559-C	0.595173	3E-9		0.0114965	[0.0077-0.0153] unit increase	Affymetrix [NR] (imputed)	N
1610	chr5	134444981	134444982	rs254559	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	5q31.1	C5orf66	rs254559-C	0.595163	2E-17		0.0170733	[0.013-0.021] unit increase	Affymetrix [NR] (imputed)	N
1610	chr5	134450661	134450662	rs36096333	34671089	Hikino K	2021-10-21	J Hum Genet	Genome-wide association study of colorectal polyps identified highly overlapping polygenic architecture with colorectal cancer.	Colorectal polyp and colorectal cancer (MTAG)	11,292 East Asian ancestry cases, 237,990 East Asian ancestry controls	NA	5q31.1		rs36096333-?	NR	1E-10	(Colorectal polyp)	1.09	[1.06-1.12]	Illumina [NR] (imputed)	N
1610	chr5	134452596	134452597	rs4976269	32060260	Campos AI	2020-02-14	Nat Commun	Insights into the aetiology of snoring from observational and genetic investigations in the UK Biobank.	Snoring	61,792 British ancestry female cases, 156,554 British ancestry female controls	NA	5q31.1	NR	rs4976269-G	NR	5E-6		0.006633	[0.0038-0.0095] unit increase	NR [11010159] (imputed)	N
1610	chr5	134452596	134452597	rs4976269	32060260	Campos AI	2020-02-14	Nat Commun	Insights into the aetiology of snoring from observational and genetic investigations in the UK Biobank.	Snoring	152,302 British ancestry cases, 256,015 British ancestry controls	NA	5q31.1	NR	rs4976269-G	NR	9E-10		0.00684392	[0.0047-0.009] unit increase	NR [11010159] (imputed)	N
1610	chr5	134452596	134452597	rs4976269	32060260	Campos AI	2020-02-14	Nat Commun	Insights into the aetiology of snoring from observational and genetic investigations in the UK Biobank.	Snoring	151,836 British ancestry cases, 255,230 British ancestry controls	NA	5q31.1	NR	rs4976269-G	NR	5E-11	(adjusted for BMI)	0.007242	[0.0051-0.0094] unit increase	NR [11010159] (imputed)	N
1610	chr5	134453813	134453814	rs745558	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	5q31.1	C5orf66	rs745558-A	0.328654	3E-9		0.0139718	[0.0093-0.0186] unit decrease	Affymetrix [93095623] (imputed)	N
1610	chr5	134453813	134453814	rs745558	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Snoring	359,916 European ancestry individuals	NA	5q31.1	NR	rs745558-G	0.6721	3E-10		1.0309278	[1.02-1.04]	Affymetrix, Illumina [10862568] (imputed)	N
1610	chr5	134464065	134464066	rs7722513	34671089	Hikino K	2021-10-21	J Hum Genet	Genome-wide association study of colorectal polyps identified highly overlapping polygenic architecture with colorectal cancer.	Colorectal cancer	6,845 East Asian ancestry cases, 80,764 East Asian ancestry controls	NA	5q31.1		rs7722513-?	NR	6E-12		0.87	[0.84-0.9]	Illumina [NR] (imputed)	N
1610	chr5	134464065	134464066	rs7722513	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Colorectal cancer	8,305 East Asian ancestry cases, 159,386 East Asian ancestry controls	NA	5q31.1		rs7722513-G	0.72065009	3E-17		0.16010065	[0.12-0.2] unit decrease	Illumina [13428297] (imputed)	N
1610	chr5	134464065	134464066	rs7722513	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Colorectal cancer	6,581 European ancestry cases, 463,421 European ancestry controls, 8,305 East Asian ancestry cases, 159,386 East Asian ancestry controls	NA	5q31.1		rs7722513-G	NR	3E-17		0.1106	[0.085-0.136] unit decrease	Affymetrix, Illumina [25843452] (imputed)	N
1610	chr5	134464065	134464066	rs7722513	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Colon polyp	22,049 European ancestry cases, 332,368 European ancestry controls, 4,768 East Asian ancestry cases, 166,052 East Asian ancestry controls	NA	5q31.1		rs7722513-G	NR	7E-10		0.0588	[0.04-0.077] unit decrease	Affymetrix, Illumina [20457468] (imputed)	N
1610	chr5	134464065	134464066	rs7722513	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Colorectal cancer	7,062 Japanese ancestry cases, 195,745 Japanese ancestry controls	NA	5q31.1		rs7722513-G	0.71600577	1E-13		0.86136234	[0.82802136-0.896045818]	Illumina [8919992] (imputed)	N
1610	chr5	134464065	134464066	rs7722513	31826910	Lu Y	2019-12-11	Cancer Epidemiol Biomarkers Prev	Identification of novel loci and new risk variant in known loci for colorectal cancer risk in East Asians.	Colorectal cancer	23,572 East Asian ancestry cases, 48,700 East Asian ancestry controls	58,131 European ancestry cases, 67,347 European ancestry controls	5q31.1		rs7722513-C	0.25	9E-20	(East Asian)	1.15	[1.11-1.18]	Affymetrix, Illumina [up to 47000000] (imputed)	N
1610	chr5	134467219	134467220	rs4976270	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	5q31.1	PITX1, H2AFY	rs4976270-C	0.5501	5E-15		1.07	[1.05-1.09]	Affymetrix, Illumina [16900397] (imputed)	N
1610	chr5	134467699	134467700	rs477687	21502085	Troyer JL	2011-05-01	J Infect Dis	Genome-wide association study implicates PARD3B-based AIDS restriction.	AIDS progression	755 European ancestry seroconverter cases	NA	5q31.1	H2AFY	rs477687-?	0.18	6E-6		1.55	[NR]	Affymetrix [700022]	N
1610	chr5	134467750	134467751	rs639933	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	5q31.1	C5orf66	rs639933-A	0.6333	8E-13		0.0134	[0.0097-0.0171] unit increase	Affymetrix [18391927] (imputed)	N
1610	chr5	134467750	134467751	rs639933	31089142	Law PJ	2019-05-14	Nat Commun	Association analyses identify 31 new risk loci for colorectal cancer susceptibility.	Colorectal cancer	31,197 European ancestry cases, 61,770 European ancestry controls	NA	5q31.1	NR	rs639933-C	0.38	1E-9		1.07	[1.05-1.10]	Affymetrix, Illumina [> 10000000] (imputed)	N
1611	chr5	134485284	134485285	rs566750	29981864	Mohammadnejad A	2018-07-05	Ann Allergy Asthma Immunol	A case-only genome-wide association study on gene-sex interaction in allergic rhinitis.	Allergic rhinitis x sex interaction	184 Danish ancestry male cases, 250 Danish ancestry female cases	NA	5q31.1	C5orf66	rs566750-?	NR	3E-6		0.67	NR unit increase	Affymetrix [1348667] (imputed)	N
1611	chr5	134491149	134491150	rs6596201	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	5q31.1	NR	rs6596201-A	NR	8E-6	(GEE model)	0.82968	[0.47-1.19] unit decrease	NR [NR] (imputed)	N
1611	chr5	134497598	134497599	rs35917784	31826910	Lu Y	2019-12-11	Cancer Epidemiol Biomarkers Prev	Identification of novel loci and new risk variant in known loci for colorectal cancer risk in East Asians.	Colorectal cancer	23,572 East Asian ancestry cases, 48,700 East Asian ancestry controls	58,131 European ancestry cases, 67,347 European ancestry controls	5q31.1		rs35917784-A	0.1	4E-6	(East Asian, joint analysis)	1.12	[1.07-1.17]	Affymetrix, Illumina [up to 47000000] (imputed)	N
1611	chr5	134499091	134499092	rs647161	30529582	Lu Y	2018-12-06	Gastroenterology	Large-scale Genome-wide Association Study of East Asians Identifies Loci Associated With Risk for Colorectal Cancer.	Colorectal cancer	22,775 East Asian ancestry cases, 47,731 East Asian ancestry controls	NA	5q31.1	PITX1	rs647161-A	0.33	3E-15		1.12	[1.09-1.15]	Affymetrix, Illumina [up to 10700000] (imputed)	N
1611	chr5	134499091	134499092	rs647161	26965516	Zeng C	2016-03-08	Gastroenterology	Identification of Susceptibility Loci and Genes for Colorectal Cancer Risk.	Colorectal cancer	4,508 East Asian ancestry cases, 16,588 East Asian ancestry controls	11,044 East Asian ancestry cases, 18,036 East Asian ancestry controls	5q31.1	NR	rs647161-A	0.31	2E-14		1.15	[1.11-1.19]	Affymetrix, Illumina [~ 4000000] (imputed)	N
1611	chr5	134499091	134499092	rs647161	24836286	Zhang B	2014-05-18	Nat Genet	Large-scale genetic study in East Asians identifies six new loci associated with colorectal cancer risk.	Colorectal cancer	2,098 East Asian ancestry cases, 6,172 East Asian ancestry controls	12,865 East Asian ancestry cases, 25,773 East Asian ancestry controls, up to 16,984 European ancestry cases, up to 18,262 European ancestry controls	5q31.1	PITX1	rs647161-A	0.31	2E-14	(East Asian)	1.15	[1.11-1.19]	Affymetrix, Illumina [2400000] (imputed)	N
1611	chr5	134499091	134499092	rs647161	23263487	Jia WH	2012-12-23	Nat Genet	Genome-wide association analyses in East Asians identify new susceptibility loci for colorectal cancer.	Colorectal cancer	2,098 East Asian ancestry cases, 5,749 East Asian ancestry controls	5,358 East Asian ancestry cases, 5,922 East Asian ancestry controls, 26,060 European ancestry individuals	5q31.1	CATSPER3, PCBD2, MIR4461 and H2AFY, PITX1	rs647161-A	0.667	1E-10		1.11	[1.08-1.15]	Affymetrix, Illumina [1636380] (imputed)	N
1611	chr5	134499091	134499092	rs647161	23263487	Jia WH	2012-12-23	Nat Genet	Genome-wide association analyses in East Asians identify new susceptibility loci for colorectal cancer.	Colorectal cancer	2,098 East Asian ancestry cases, 5,749 East Asian ancestry controls	5,358 East Asian ancestry cases, 5,922 East Asian ancestry controls, 26,060 European ancestry individuals	5q31.1	CATSPER3, PCBD2, MIR4461 and H2AFY, PITX1	rs647161-A	0.313	4E-10	(East Asian)	1.17	[1.11-1.22]	Affymetrix, Illumina [1636380] (imputed)	N
1611	chr5	134507858	134507859	rs10038879	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CST4	5,368 Icelandic ancestry individuals	NA	5q31.1		rs10038879-C	0.3861	7E-18		0.165283	[0.13-0.2] unit increase	Illumina [7506463] (imputed)	N
1611	chr5	134509938	134509939	rs10040410	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	5q31.1	C5orf66	rs10040410-T	NR	4E-9		0.0199485	[0.013-0.027] unit increase	Affymetrix [321016] (imputed)	N
1611	chr5	134509986	134509987	rs1122171	31235808	Shungin D	2019-06-24	Nat Commun	Genome-wide analysis of dental caries and periodontitis combining clinical and self-reported data.	Number of decayed, missing and filled tooth surfaces or use of dentures	14,976 European ancestry individuals with decayed, missing or filled tooth surface measurement, 11,816 Hispanic/Latino individuals with decayed, missing or filled tooth surface measurement, 77,714 European ancestry dentures cases, 383,317 European ancestry controls	NA	5q31.1	C5orf66	rs1122171-T	0.59	3E-62		0.044	[0.039-0.049] unit increase	Affymetrix, Illumina [~ 8900000] (imputed)	N
1611	chr5	134509986	134509987	rs1122171	31235808	Shungin D	2019-06-24	Nat Commun	Genome-wide analysis of dental caries and periodontitis combining clinical and self-reported data.	Number of decayed, missing and filled tooth surfaces	14,976 European ancestry individuals, 11,816 Hispanic/Latino individuals	NA	5q31.1	C5orf66	rs1122171-T	0.59	2E-13		0.064	[0.047-0.081] unit increase	Affymetrix, Illumina [at least 8900000] (imputed)	N
1611	chr5	134509986	134509987	rs1122171	31235808	Shungin D	2019-06-24	Nat Commun	Genome-wide analysis of dental caries and periodontitis combining clinical and self-reported data.	Dentures	77,714 European ancestry cases, 383,317 European ancestry controls	NA	5q31.1	C5orf66	rs1122171-T	0.59	9E-52		0.085	[0.074-0.096] unit increase	Affymetrix [at least 8900000] (imputed)	N
1611	chr5	134522976	134522977	rs2059780	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5q31.1		rs2059780-?	NR	4E-15				NR [~ 8900000] (imputed)	N
1611	chr5	134541907	134541908	rs763294065	34469433	Ashvetiya T	2021-09-01	PLoS One	Identification of novel genetic susceptibility loci for thoracic and abdominal aortic aneurysms via genome-wide association study using the UK Biobank Cohort.	Abdominal aortic aneurysm	1,363 European, Indian, Caribbean, African ancestry cases, 27,260  European, Indian, Caribbean, African ancestry controls	NA	5q31.1		rs763294065-?	NR	1E-7		2.74039		NR [NR] (imputed)	N
1611	chr5	134543058	134543059	rs4976247	33597122	Verbitsky M	2021-02-17	J Am Soc Nephrol	Copy Number Variant Analysis and Genome-wide Association Study Identify Loci with Large Effect for Vesicoureteral Reflux.	Vesicoureteral reflux	1,395 European ancestry cases, 5,366 European ancestry controls	NA	5q31.1	NR	rs4976247-C	0.3867	4E-7	(additive)	0.7774779	[0.705590668000422-0.856689274193543]	Affymetrix, Illumina [6131010] (imputed)	N
1611	chr5	134563156	134563157	rs634308	22658931	Pajewski NM	2012-05-30	Vaccine	A genome-wide association study of host genetic determinants of the antibody response to Anthrax Vaccine Adsorbed.	Immune response to anthrax vaccine	726 European ancestry individuals	NA	5q31.1	H2AFY, PITX1	rs634308-G	NR	4E-6		0.1	[0.057-0.143] unit decrease	Affymetrix [736996]	N
1611	chr5	134571735	134571736	rs76993656	26423011	Wain LV	2015-09-27	Lancet Respir Med	Novel insights into the genetics of smoking behaviour, lung function, and chronic obstructive pulmonary disease (UK BiLEVE): a genetic association study in UK Biobank.	Lung function in never smokers (high FEV1 vs average FEV1)	4,902 European ancestry individuals with high FEV1 measurements, 9,827 European ancestry individuals with average FEV1 measurements	NA	5q31.1	LOC340073	rs76993656-A	0.027	8E-8		1.523	[1.306-1.776]	Affymetrix [28509962] (imputed)	N
1611	chr5	134572228	134572229	rs606854	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	5q31.1	H2AFY	rs606854-A	0.377	6E-6	(Total glutathione )	0.03	[NR] umol/L increase	Illumina [899892]	N
1611	chr5	134584184	134584185	rs2019790	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	5q31.1	NR	rs2019790-G	0.492911	7E-9		0.0393725	[0.026-0.053] unit decrease	Affymetrix [17914406] (imputed)	N
1611	chr5	134586979	134586980	rs11242236	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	5q31.1	C5orf66-AS2	rs11242236-A	0.4533	2E-14		0.0144	[0.011-0.018] unit decrease	Affymetrix [18391927] (imputed)	N
1611	chr5	134598320	134598321	rs11242239	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	5q31.1	NR	rs11242239-T	NR	2E-10		0.0157	[0.011-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
1611	chr5	134607558	134607559	rs677394	30410027	Gudmundsson J	2018-11-08	Nat Commun	Genome-wide associations for benign prostatic hyperplasia reveal a genetic correlation with serum levels of PSA.	Benign prostatic hyperplasia and lower urinary tract symptoms (prostate cancer excluded)	18,138 European ancestry cases, 277,213 European ancestry controls	NA	5q31.1		rs677394-C	0.877	1E-10		1.1363636	[1.09-1.18]	Affymetrix, Illumina [42907111] (imputed)	N
1611	chr5	134607558	134607559	rs677394	30410027	Gudmundsson J	2018-11-08	Nat Commun	Genome-wide associations for benign prostatic hyperplasia reveal a genetic correlation with serum levels of PSA.	Benign prostatic hyperplasia and lower urinary tract symptoms	20,621 European ancestry cases, 280,541 European ancestry controls	NA	5q31.1	C5orf66, H2AFY	rs677394-C	0.123	3E-11		1.1363636	[1.09-1.18]	Affymetrix, Illumina [42907111] (imputed)	N
1612	chr5	134613813	134613814	rs188110128	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	5q31.1	H2AFY	rs188110128-G	NR	6E-6	(G_Faecalitalea_HB)	1.51699	[0.86-2.18] unit increase	Illumina [7711310] (imputed)	N
1612	chr5	134692243	134692244	rs3776208	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	5q31.1	H2AFY	rs3776208-C	0.181356	2E-15		0.02308766	[0.017-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
1612	chr5	134712565	134712566	rs79237520	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	5q31.1	H2AFY	rs79237520-T	0.023399	2E-9		0.04409606	[0.03-0.058] unit increase	Affymetrix [93095623] (imputed)	N
1612	chr5	134712565	134712566	rs79237520	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	5q31.1	NR	rs79237520-T	0.022751	2E-10		0.040077	[0.028-0.052] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
1612	chr5	134712565	134712566	rs79237520	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	5q31.1	H2AFY	rs79237520-T	0.0243	1E-12		0.08702981	[0.063-0.111] unit increase	Affymetrix [~ 2500000] (imputed)	N
1612	chr5	134722832	134722833	rs75925066	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	5q31.1		rs75925066-A	NR	9E-22		0.0751	[0.06-0.09] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
1612	chr5	134722832	134722833	rs75925066	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	5q31.1		rs75925066-C	0.977	5E-10				Affymetrix [10369434] (imputed)	N
1612	chr5	134722832	134722833	rs75925066	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	5q31.1		rs75925066-C	0.977	9E-13				Affymetrix [10369434] (imputed)	N
1612	chr5	134722832	134722833	rs75925066	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	5q31.1	H2AFY	rs75925066-A	0.02345	4E-11		0.048150793	[0.034-0.062] unit decrease	Affymetrix [93095623] (imputed)	N
1612	chr5	134722832	134722833	rs75925066	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	5q31.1	H2AFY	rs75925066-A	0.0234450000000001	3E-16		0.05971532	[0.045-0.074] unit increase	Affymetrix [93095623] (imputed)	N
1612	chr5	134722832	134722833	rs75925066	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	5q31.1	H2AFY	rs75925066-A	0.023444	2E-33		0.08776899	[0.073-0.102] unit increase	Affymetrix [93095623] (imputed)	N
1612	chr5	134722832	134722833	rs75925066	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q31.1	NR	rs75925066-A	0.0221392	3E-37				Affymetrix, Illumina [23472807] (imputed)	N
1612	chr5	134722832	134722833	rs75925066	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	5q31.1	NR	rs75925066-A	0.022916	2E-40		0.085435	[0.073-0.098] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1612	chr5	134730242	134730243	rs703254	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	5q31.1	NR	rs703254-?	NR	9E-12				Affymetrix [NR]	N
1613	chr5	134758825	134758826	rs7705463	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q31.1	NR	rs7705463-T	0.175478	5E-11				Affymetrix, Illumina [17210439] (imputed)	N
1613	chr5	134759526	134759527	rs13158375	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	5q31.1	NR	rs13158375-A	0.163036	6E-13		0.018779	[0.014-0.024] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
1613	chr5	134776223	134776224	rs11242247	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	5q31.1		rs11242247-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1613	chr5	134794908	134794909	rs899162	30267110	Kwon YC	2018-09-28	Pediatr Cardiol	Identification of the TIFAB Gene as a Susceptibility Locus for Coronary Artery Aneurysm in Patients with Kawasaki Disease.	Coronary artery aneurysm in Kawasaki disease	33 cases, 215 controls	12 cases, 532 controls	5q31.1	TIFAB, DCANP1	rs899162-A	0.141	2E-7		3.2	[2.02-5.05]	Illumina [~ 1000000]	N
1613	chr5	134806313	134806314	rs113199279	34411106	Liu C	2021-08-19	PLoS Genet	Genome scans of facial features in East Africans and cross-population comparisons reveal novel associations.	Facial morphology (segment 28)	2,595 Tanzanian ancestry individuals	NA	5q31.1		rs113199279-?	NR	2E-8				Illumina [NR] (imputed)	N
1614	chr5	134881955	134881956	rs72787161	32180562	Kulyte A	2020-01-25	Mol Metab	Genome-wide association study of adipocyte lipolysis in the GENetics of adipocyte lipolysis (GENiAL) cohort.	Stimulated adipocyte lipolysis	874 European ancestry individuals	NA	5q31.1	NR	rs72787161-G	0.983474	2E-7		0.288	[0.18-0.4] unit decrease	NR [9260588] (imputed)	N
1614	chr5	134901155	134901156	rs10045413	21685187	Siedlinski M	2011-06-16	Thorax	Genome-wide association study of smoking behaviours in patients with COPD.	Age at smoking initiation in chronic obstructive pulmonary disease	3,397 European ancestry cases	NA	5q31.1	CXCL14	rs10045413-T	0.68	7E-6		0.039	unit increase	Illumina [~ 6300000] (imputed)	N
1615	chr5	135072968	135072969	rs71587588	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Cerebrospinal fluid t-tau levels	305 European ancestry cognitively normal individuals, 581 European ancestry mild cognitive impairment cases, 190 European ancestry Alzheimer's disease dementia cases	NA	5q31.1	CXCL14, SLC25A48	rs71587588-T	0.09	2E-7		0.52	[0.32-0.72] unit increase	Illumina [8454470] (imputed)	N
1615	chr5	135104948	135104949	rs201158842	30014611	Weiss RB	2018-07-16	Ann Neurol	Long-range genomic regulators of THBS1 and LTBP4 modify disease severity in Duchenne muscular dystrophy.	Age at loss of ambulation in Duchenne muscular dystrophy	243 European ancestry cases, 10 cases	NA	5q31.1	NR	rs201158842-?	NR	5E-6	(EA)			Illumina [1735619]	N
1615	chr5	135120844	135120845	rs78018149	29532581	Hallfors J	2018-03-13	Addict Biol	Genome-wide association study in Finnish twins highlights the connection between nicotine addiction and neurotrophin signaling pathway.	Nicotine dependence	873 Finnish ancestry cases and 842 Finnish ancestry controls from 739 families	NA	5q31.1	NR	rs78018149-A	0.053808	6E-6		0.1796756	[0.10-0.26] unit increase	Illumina [9469131] (imputed)	N
1616	chr5	135146593	135146594	rs114090132	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Cerebrospinal fluid p-tau levels in Alzheimer's disease dementia	190 European ancestry Alzheimer's disease dementia cases	NA	5q31.1	CXCL14, SLC25A48, IL9	rs114090132-T	0.02	8E-7		2.46	[1.54-3.38] unit decrease	Illumina [8344766] (imputed)	N
1616	chr5	135161417	135161418	rs877356	28628665	Sobota RS	2017-06-19	PLoS Genet	A chromosome 5q31.1 locus associates with tuberculin skin test reactivity in HIV-positive individuals from tuberculosis hyper-endemic regions in east Africa.	Resistance to Mycobacterium tuberculosis in HIV-positive individuals measured by a negative tuberculin skin test (dichotomous)	244 cases, 225 controls		5q31.1	SLC25A48, IL9	rs877356-?	0.7708	6E-8	(additive model)	3.021148	[2.03-4.5]	Illumina [542585]	N
1616	chr5	135161417	135161418	rs877356	28628665	Sobota RS	2017-06-19	PLoS Genet	A chromosome 5q31.1 locus associates with tuberculin skin test reactivity in HIV-positive individuals from tuberculosis hyper-endemic regions in east Africa.	Resistance to Mycobacterium tuberculosis in HIV-positive individuals measured by a negative tuberculin skin test (continuous)	244 cases, 225 controls		5q31.1	SLC25A48, IL9	rs877356-T		7E-8	(additive model)	3.336	[2.144-4.529] unit decrease	Illumina [542585]	N
1616	chr5	135164617	135164618	rs13178541	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	5q31.1	NR	rs13178541-C	0.811571763392857	5E-6	(IGP36)	0.1833	[0.1-0.26] unit increase	Illumina [~ 2500000] (imputed)	N
1616	chr5	135201608	135201609	rs114547249	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin I concentration	1,606 African American individuals	NA	5q31.1		rs114547249-?	NR	3E-6		0.5	[0.29-0.71] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1616	chr5	135208907	135208908	rs11242303	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	5q31.1	NR	rs11242303-?	NR	2E-6				Affymetrix [NR]	N
1616	chr5	135214676	135214677	rs7734448	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	5q31.1	SLC25A48	rs7734448-A	0.0050	3E-6	(IL6 )	0.03	[NR] pg/mL increase	Illumina [899892]	N
1616	chr5	135228387	135228388	rs2069884	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q31.1	NR	rs2069884-T	0.126479	5E-11				Affymetrix, Illumina [19872809] (imputed)	N
1616	chr5	135228387	135228388	rs2069884	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	5q31.1	NR	rs2069884-T	0.127329	1E-12		0.021193	[0.015-0.027] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
1616	chr5	135231855	135231856	rs1799962	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	5q31.1		rs1799962-?	NR	5E-13				NR [~ 8900000] (imputed)	N
1616	chr5	135244001	135244002	rs34317837	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	5q31.1		rs34317837-A	NR	2E-9		0.0155	[0.01-0.021] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
1616	chr5	135244001	135244002	rs34317837	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	5q31.1	GS1-39E22.1	rs34317837-A	0.124039	4E-9		0.01985722	[0.013-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1616	chr5	135244001	135244002	rs34317837	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	5q31.1	GS1-39E22.1	rs34317837-A	0.124036	1E-10		0.021714708	[0.015-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
1617	chr5	135288631	135288632	rs62623707	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5q31.1		rs62623707-?	NR	5E-13				NR [~ 8900000] (imputed)	N
1617	chr5	135293511	135293512	rs248160	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	5q31.1	LECT2	rs248160-T	0.67046875	4E-33	(LECT2, 5970_61_3)	0.31224647	[0.26-0.36] unit decrease	Illumina [> 1000000] (imputed)	N
1617	chr5	135301816	135301817	rs2526145	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LECT2	5,362 Icelandic ancestry individuals	NA	5q31.1		rs2526145-T	0.3233	7E-55		0.296047	[0.26-0.33] unit increase	Illumina [7506463] (imputed)	N
1617	chr5	135367756	135367757	rs756463	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	5q31.1	IL9	rs756463-C	0.7659375	5E-7	(IL9, 5834_18_3)	0.1433786	[0.087-0.199] unit decrease	Illumina [> 1000000] (imputed)	N
1617	chr5	135377565	135377566	rs7719624	24483146	Li L	2014-02-01	BMC Genomics	Discovery of genetic biomarkers contributing to variation in drug response of cytidine analogues using human lymphoblastoid cell lines.	Response to cytidine analogues (gemcitabine)	60 European ancestry lymphoblastoid cell lines, 54 African American lymphoblastoid cell lines, 60 Han Chinese ancestry lymphoblastoid cell lines	NA	5q31.1	TGFBI	rs7719624-?		4E-6				Affymetrix, Illumina [1348798]	N
1617	chr5	135382988	135382989	rs1442	32492067	Ruffieux H	2020-06-03	PLoS Comput Biol	A fully joint Bayesian quantitative trait locus mapping of human protein abundance in plasma.	Protein quantitative trait loci	394 European ancestry individuals	548 European ancestry individuals	5q31.1	NR	rs1442-?	NR	2E-13	(BGH3)			Illumina [~ 4000000] (imputed)	N
1617	chr5	135389432	135389433	rs13159365	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TGFBI	5,362 Icelandic ancestry individuals	NA	5q31.1		rs13159365-T	0.4306	2E-99		0.374091	[0.34-0.41] unit decrease	Illumina [7506463] (imputed)	N
1617	chr5	135389432	135389433	rs13159365	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5q31.1	TGFBI	rs13159365-T	0.507	5E-78	(Transforming growth factor-beta-induced protein ig-h3, TGFBI.3283.21.1)	0.45	[0.41-0.49] unit decrease	Affymetrix [10572788] (imputed)	N
1617	chr5	135393137	135393138	rs17689879	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	5q31.1	TGFBI	rs17689879-C	0.56828125	4E-61	(TGFBI, 3283_21_1)	0.38860756	[0.34-0.43] unit increase	Illumina [> 1000000] (imputed)	N
1617	chr5	135393753	135393754	rs3792900	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	5q31.1	NR	rs3792900-C	0.47	4E-17				Affymetrix, Illumina [NR] (imputed)	N
1617	chr5	135393753	135393754	rs3792900	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	5q31.1	NR	rs3792900-C	0.47	4E-11	(Male)			Affymetrix, Illumina [NR] (imputed)	N
1617	chr5	135393753	135393754	rs3792900	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	5q31.1	NR	rs3792900-C	0.47	2E-8	(Female)			Affymetrix, Illumina [NR] (imputed)	N
1617	chr5	135393753	135393754	rs3792900	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	5q31.1	TGFBI	rs3792900-C	0.4728643	4E-29	(Transforming growth factor-beta-induced protein ig-h3)	0.4488	[0.37-0.52] unit increase	Affymetrix [509946]	N
1617	chr5	135393753	135393754	rs3792900	27992416	Lane JM	2016-12-19	Nat Genet	Genome-wide association analyses of sleep disturbance traits identify new loci and highlight shared genetics with neuropsychiatric and metabolic traits.	Insomnia	up to 12,674 European ancestry male cases, up to 19,481 European ancestry female cases, up to 16,009 European ancestry male controls, up to 10,964 European ancestry female controls,	NA	5q31.1	TGFBI	rs3792900-C	NR	2E-8	(females)	1.1	[1.07-1.14]	Affymetrix [up to 73355677] (imputed)	N
1617	chr5	135396451	135396452	rs13168506	26089329	Carty CL	2015-06-18	Stroke	Meta-Analysis of Genome-Wide Association Studies Identifies Genetic Risk Factors for Stroke in African Americans.	Stroke	up to 1,592 African American cases, up to 13,154 African American controls	NA	5q31.1	TGFBI	rs13168506-A	0.27	3E-7	(cohort study)	1.33	[1.19-1.49]	Affymetrix, Illumina [up to 2600000] (imputed)	N
1618	chr5	135430667	135430668	rs6882422	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	5q31.1	VTRNA2-1	rs6882422-G	0.88536	1E-23		0.0290008	[0.023-0.035] unit increase	NR [13737936] (imputed)	N
1618	chr5	135430667	135430668	rs6882422	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	5q31.1		rs6882422-?	NR	8E-25				NR [~ 8900000] (imputed)	N
1618	chr5	135430667	135430668	rs6882422	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	5q31.1		rs6882422-?	NR	5E-22		0.0301471	[0.024-0.037] unit increase	Affymetrix [20259828] (imputed)	N
1618	chr5	135430667	135430668	rs6882422	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	5q31.1	VTRNA2-1	rs6882422-G	0.883986	3E-10		0.0328092	[0.022-0.043] unit increase	NR [17166351] (imputed)	N
1618	chr5	135430667	135430668	rs6882422	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	5q31.1	VTRNA2-1	rs6882422-G	0.883658	2E-7	(women)	0.0374544	[0.023-0.052] unit increase	NR [17166351] (imputed)	N
1618	chr5	135439728	135439729	rs6863438	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	5q31.1		rs6863438-A	0.49	5E-9		5.83	z score increase	Affymetrix [9061022] (imputed)	N
1618	chr5	135440363	135440364	rs12521857	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	5q31.1		rs12521857-A	0.42	2E-9		5.97	z score increase	Affymetrix [9061022] (imputed)	N
1618	chr5	135441558	135441559	rs12515040	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	5q31.1	NR	rs12515040-C	0.4166	1E-9				NR [9056863] (imputed)	N
1618	chr5	135483943	135483943	rs139474987	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	5q31.1	SMAD5	rs139474987-GT	0.221116	5E-9		0.01680098	[0.011-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1618	chr5	135486535	135486536	rs7711696	30804566	Lane JM	2019-02-25	Nat Genet	Biological and clinical insights from genetics of insomnia symptoms.	Insomnia symptoms (never/rarely vs. usually)	129,270 European ancestry cases, 108,357 European ancestry controls	17,140 European ancestry cases, 61,850 European ancestry controls	5q31.1	SMAD5	rs7711696-T	0.304975	3E-12		1.03	[1.02-1.04]	Affymetrix [14661600] (imputed)	N
1618	chr5	135486535	135486536	rs7711696	30804566	Lane JM	2019-02-25	Nat Genet	Biological and clinical insights from genetics of insomnia symptoms.	Insomnia symptoms (never/rarely vs. sometimes/usually)	345,022 European ancestry cases, 108,357 European ancestry controls	17,140 European ancestry cases, 61,850 European ancestry controls	5q31.1	SMAD5	rs7711696-T	0.304975	1E-7		1.03	[1.02-1.04]	Affymetrix [14661600] (imputed)	N
1618	chr5	135508380	135508381	rs4585442	30846698	Dashti HS	2019-03-07	Nat Commun	Genome-wide association study identifies genetic loci for self-reported habitual sleep duration supported by accelerometer-derived estimates.	Sleep duration (short sleep)	106,192  European ancestry cases, 305,742 European ancestry controls	47,180  adults, 10,554 children or adolescents	5q31.1	SMAD5, SMAD5-AS1, TRPC7	rs4585442-G	NR	8E-10		1.031		NR [14661600] (imputed)	N
1618	chr5	135519350	135519351	rs13177459	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL9	5,365 Icelandic ancestry individuals	NA	5q31.1		rs13177459-C	0.2905	2E-18		0.181688	[0.14-0.22] unit increase	Illumina [7506463] (imputed)	N
1618	chr5	135525556	135525557	rs6872948	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	5q31.1		rs6872948-T	0.45	2E-8		5.62	z score increase	Affymetrix [9061022] (imputed)	N
1619	chr5	135575293	135575294	rs13173271	34025683	Kanoni S	2021-05-07	Front Immunol	Nutrigenetic Interactions Might Modulate the Antioxidant and Anti-Inflammatory Status in Mastiha-Supplemented Patients With NAFLD.	Interleukin-6 levels in non-alcoholic fatty liver disease x mastiha supplementation interaction	35 European or unknown ancestry mastiha exposed individuals, 52 European or unknown ancestry unexposed individuals	NA	5q31.1	TRPC7	rs13173271-G	0.6	8E-9		1.556	[1.03-2.09] unit decrease	Illumina [10307610] (imputed)	N
1619	chr5	135581658	135581659	rs11740657	27143689	Hertz DL	2016-05-03	Clin Cancer Res	Pharmacogenetic Discovery in CALGB (Alliance) 90401 and Mechanistic Validation of a VAC14 Polymorphism that Increases Risk of Docetaxel-Induced Neuropathy.	Docetaxel-induced peripheral neuropathy in metastatic castrate-resistant prostate cancer	50 European ancestry cases with neuropathy, 573 European ancestry cases without neuropathy	NA	5q31.1	TRPC7	rs11740657-?	NR	9E-6		2.776	[NR]	Illumina [498081]	N
1619	chr5	135615614	135615615	rs180769	30846698	Dashti HS	2019-03-07	Nat Commun	Genome-wide association study identifies genetic loci for self-reported habitual sleep duration supported by accelerometer-derived estimates.	Sleep duration	446,118 European ancestry individuals	47,180  adults, 10,554 children or adolescents	5q31.1	NR	rs180769-T	NR	1E-7		0.678	unit increase	Affymetrix [14661600] (imputed)	N
1619	chr5	135636958	135636959	rs13189678	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	5q31.1	NA	rs13189678-T	0.1327	2E-8	(Female)	1.063	[1.04-1.08]	Affymetrix, Illumina [NR] (imputed)	N
1619	chr5	135653736	135653737	rs55972276	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	5q31.1	NR	rs55972276-A	0.1366	4E-17		1.076	[1.06-1.09]	Affymetrix, Illumina [NR] (imputed)	N
1619	chr5	135653736	135653737	rs55972276	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	5q31.1	NA	rs55972276-A	0.1366	4E-11	(Male)	1.098	[1.07-1.13]	Affymetrix, Illumina [NR] (imputed)	N
1620	chr5	135680539	135680540	rs950716	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	5q31.1	NR	rs950716-A	0.862619	3E-14		0.0336833	[0.025-0.042] unit increase	Affymetrix [16577424] (imputed)	N
1620	chr5	135689838	135689839	rs1979835	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (age at voice breaking MTAG)	205,354 European ancestry individuals	NA	5q31.1		rs1979835-A	NR	3E-9		0.029311545	[0.02-0.039] years increase	NR [7400000] (imputed)	N
1620	chr5	135694986	135694987	rs3756699	31752434	Costa-Urrutia P	2019-11-19	Genes (Basel)	Genome-Wide Association Study of Body Mass Index and Body Fat in Mexican-Mestizo Children.	Body fat percentage	828 Mexican-Mestizo ancestry children	NA	5q31.1	TRPC7	rs3756699-G	0.012	4E-8		0.1	NR unit increase	Affymetrix [~ 2500000] (imputed)	N
1621	chr5	135909158	135909159	rs7448234	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Lateral ventricle temporal horn volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	5q31.1	NR	rs7448234-?		7E-6				Illumina [4322238] (imputed)	N
1622	chr5	136032552	136032553	rs35514087	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder	29,475 European ancestry cases, 63,482 European ancestry controls	NA	5q31.1	NR	rs35514087-G	0.0476509	2E-7		1.086	[1.05-1.12]	Affymetrix [7791636] (imputed)	N
1624	chr5	136210931	136210932	rs78459308	28203683	Heit JA	2017-02-16	Thromb Haemost	Identification of unique venous thromboembolism-susceptibility variants in African-Americans.	Venous thromboembolism adjusted for sickle cell variant rs77121243-T	393 African American cases, 4,941 African American controls.	NR	5q31.1	LOC391834	rs78459308-?	0.92	8E-6		2.7855155		Affymetrix, Illumina [14074516] (imputed)	N
1625	chr5	136332793	136332794	rs6876032	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	5q31.2	NR	rs6876032-?	NR	8E-6	(Native Hawaiian)	0.4158	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1625	chr5	136405835	136405836	rs143404520	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	5q31.2	SPOCK1	rs143404520-T	0.999	4E-6	(AA)	0.258	unit increase	Illumina [NR] (imputed)	N
1625	chr5	136405835	136405836	rs143404520	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	5q31.2	SPOCK1	rs143404520-T	0.999	9E-7	(AA)	1.382	NR unit increase	Illumina [NR] (imputed)	N
1625	chr5	136414487	136414488	rs73294123	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Hepatitis B	1,425 European ancestry cases, 218,180 European ancestry controls	NA	5q31.2	NR	rs73294123-?	NR	4E-6		1.1244	[0.55-1.7] unit decrease	Illumina [at least 560000] (imputed)	N
1625	chr5	136416956	136416957	rs713584	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	5q31.2		rs713584-A	0.4248	1E-8		0.008	[0.0053-0.0107] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1625	chr5	136416956	136416957	rs713584	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	5q31.2	Intergenic	rs713584-A	0.4248	5E-8	(MTAG)	0.0072	[0.0047-0.0097] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1625	chr5	136443246	136443247	rs79987496	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	5q31.2	NR	rs79987496-?	NR	2E-7	(Native Hawaiian)	1.1521	[NR] unit increase	Illumina [up to 11892802] (imputed)	N
1626	chr5	136448485	136448486	rs757422	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	5q31.2		rs757422-?	NR	4E-8				Affymetrix [NR] (imputed)	N
1626	chr5	136451299	136451300	rs4334879	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	5q31.2		rs4334879-?	NR	2E-8				Affymetrix [NR] (imputed)	N
1626	chr5	136452257	136452258	rs4519919	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	5q31.2		rs4519919-?	NR	2E-8				Affymetrix [NR] (imputed)	N
1626	chr5	136453077	136453078	rs2966736	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	5q31.2		rs2966736-?	NR	2E-8				Affymetrix [NR] (imputed)	N
1626	chr5	136454308	136454309	rs2051836	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	5q31.2		rs2051836-?	NR	1E-8				Affymetrix [NR] (imputed)	N
1626	chr5	136454870	136454871	rs2905965	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	5q31.2		rs2905965-?	NR	2E-8				Affymetrix [NR] (imputed)	N
1626	chr5	136458458	136458459	rs2905970	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	5q31.2		rs2905970-?	NR	1E-8				Affymetrix [NR] (imputed)	N
1626	chr5	136460900	136460901	rs916981	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	5q31.2		rs916981-?	NR	1E-8				Affymetrix [NR] (imputed)	N
1626	chr5	136462114	136462115	rs2905972	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	5q31.2		rs2905972-?	NR	1E-8				Affymetrix [NR] (imputed)	N
1626	chr5	136463309	136463310	rs2905974	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	5q31.2		rs2905974-?	NR	1E-8				Affymetrix [NR] (imputed)	N
1626	chr5	136463810	136463811	rs2905975	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	5q31.2		rs2905975-?	NR	1E-8				Affymetrix [NR] (imputed)	N
1626	chr5	136466703	136466704	rs2905979	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	5q31.2		rs2905979-?	NR	1E-8				Affymetrix [NR] (imputed)	N
1626	chr5	136477644	136477645	rs11242367	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	5q31.2		rs11242367-?	NR	1E-8				Affymetrix [NR] (imputed)	N
1626	chr5	136478091	136478092	rs1434654	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	5q31.2		rs1434654-?	NR	1E-8				Affymetrix [NR] (imputed)	N
1626	chr5	136480418	136480419	rs892620	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	5q31.2		rs892620-?	NR	2E-8				Affymetrix [NR] (imputed)	N
1626	chr5	136483733	136483734	rs7732324	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	5q31.2		rs7732324-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1626	chr5	136484236	136484237	rs6878864	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	5q31.2		rs6878864-?	NR	4E-8				Affymetrix [NR] (imputed)	N
1626	chr5	136486213	136486214	rs1434661	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	5q31.2		rs1434661-?	NR	4E-8				Affymetrix [NR] (imputed)	N
1626	chr5	136491482	136491483	rs4976341	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	5q31.2		rs4976341-?	NR	4E-8				Affymetrix [NR] (imputed)	N
1626	chr5	136491568	136491569	rs4976342	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	5q31.2		rs4976342-?	NR	4E-8				Affymetrix [NR] (imputed)	N
1626	chr5	136493819	136493820	rs1434664	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	5q31.2		rs1434664-?	NR	2E-8				Affymetrix [NR] (imputed)	N
1626	chr5	136498032	136498033	rs1821473	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	5q31.2		rs1821473-?	NR	2E-8				Affymetrix [NR] (imputed)	N
1626	chr5	136499841	136499842	rs6876847	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	5q31.2		rs6876847-?	NR	2E-8				Affymetrix [NR] (imputed)	N
1626	chr5	136543487	136543488	rs1369127	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	5q31.2		rs1369127-A	0.1477	2E-10	(conditional-joint)	0.0126	[0.0087-0.0165] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1626	chr5	136550582	136550583	rs11743006	28155865	Chen H	2017-02-03	Sci Rep	A Genome-Wide Association Study Identifies Genetic Variants Associated with Mathematics Ability.	Mathematical ability	998 Han Chinese ancestry children	599 Han Chinese ancestry children	5q31.2	SPOCK1	rs11743006-A	0.21	6E-10		2.43	[1.67-3.19] unit decrease	Affymetrix [at least 1108437]	N
1626	chr5	136557054	136557055	rs1434630	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	5q31.2		rs1434630-T	0.1479	5E-12		0.0137	[0.0098-0.0176] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1626	chr5	136557054	136557055	rs1434630	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	5q31.2	Intergenic	rs1434630-T	0.1479	3E-11	(MTAG)	0.0122	[0.0087-0.0157] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1626	chr5	136569787	136569791	rs774438745	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	5q31.2	SPOCK1	rs774438745-G	0.0013	2E-6		1.0101	[0.59-1.43] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1626	chr5	136569787	136569791	rs774438745	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	5q31.2	SPOCK1	rs774438745-G	0.0013	2E-6		1.025	[0.6-1.45] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1626	chr5	136573885	136573886	rs1369128	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	5q31.2		rs1369128-?	NR	3E-10				NR [~ 8900000] (imputed)	N
1627	chr5	136641224	136641225	rs2916648	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	5q31.2		rs2916648-T	0.186	3E-8		0.008	[0.006-0.01] unit increase	NR [NR] (imputed)	N
1627	chr5	136647103	136647104	rs986359	29503163	Yu H	2018-03-01	Lancet Psychiatry	Five novel loci associated with antipsychotic treatment response in patients with schizophrenia: a genome-wide association study.	Response to quetiapine in schizophrenia	386 Han Chinese ancestry cases	NA	5q31.2	SPOCK1	rs986359-A	NR	7E-6		16.4643	[9.37-23.56] unit decrease	Illumina [6097251] (imputed)	N
1628	chr5	136716723	136716724	rs1229741	25786224	Johnson EO	2015-03-18	PLoS One	Novel genetic locus implicated for HIV-1 acquisition with putative regulatory links to HIV replication and infectivity: a genome-wide association study.	HIV-1 susceptibility	628 African American high risk-cases, 1,376 African American high-risk controls, 327 European ancestry high-risk cases, 805 European ancestry high-risk controls	1,395 African American high-risk cases, 457 African American high-risk controls, 513 European ancestry high-risk cases, 168 European ancestry high-risk controls	5q31.2	SPOCK1, KDM3B	rs1229741-A	0.10	3E-6		1.67	[1.33-2.13] (AA)	Illumina [~ 8000000] (imputed)	N
1628	chr5	136740264	136740265	rs372514161	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental extreme longevity (95 years and older)	1,339 middle-aged British cases, 40,934 middle-aged British controls	NA	5q31.2	NR	rs372514161-?	NR	5E-6		0.00406	[0.0023-0.0058] unit decrease	Affymetrix [9658292] (imputed)	N
1628	chr5	136776761	136776762	rs12519073	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	5q31.2		rs12519073-T	0.2317	1E-10		0.0107	[0.0074-0.014] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1628	chr5	136782040	136782041	rs4246793	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	5q31.2	Intergenic	rs4246793-A	0.7498	3E-10	(MTAG)	0.0095	[0.0066-0.0124] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1628	chr5	136786595	136786596	rs10066409	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	5q31.2		rs10066409-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1629	chr5	136902695	136902696	rs1541364	23897914	Wang H	2013-07-29	Pediatrics	A genome-wide association study (GWAS) for bronchopulmonary dysplasia.	Bronchopulmonary dysplasia	117 African American newborn cases, 108 African American newborn controls, 448 Hispanic newborn cases, 460 Hispanic newborn controls, 74 Asian or Pacific Islander ancestry newborn cases, 93 Asian or Pacific Islander ancestry newborn controls, 174 European ancestry newborn cases, 216 European ancestry newborn controls, 14 newborn cases, 22 newborn controls	371 newborn cases, 424 newborn controls	5q31.2	SPOCK1, KLHL3	rs1541364-G	0.41	9E-6	(Dominant model)	1.24	[NR]	Illumina [1795103]	N
1629	chr5	136904425	136904426	rs2349007	28084903	Hallberg P	2017-01-13	Pharmacogenomics	Genetic variants associated with angiotensin-converting enzyme inhibitor-induced cough: a genome-wide association study in a Swedish population.	Cough in response to angiotensin-converting enzyme inhibitor drugs	123 European ancestry cases, 1,345 European and unknown ancestry controls, 1 Middle Eastern ancestry case	NR	5q31.2	Intergenic	rs2349007-?	NR	3E-7		2.79	[1.89-4.12]	Illumina [8600000] (imputed)	N
1629	chr5	136914325	136914326	rs2189082	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5q31.2	SPOCK1	rs2189082-?	NR	5E-6	(3-phosphoglyceric acid)	0.1699838	[0.097-0.243] unit increase	Affymetrix [at least 2500000] (imputed)	N
1630	chr5	137000718	137000719	rs2905582	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	5q31.2		rs2905582-C	NR	8E-12		0.0132	[0.0095-0.0169] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
1630	chr5	137000718	137000719	rs2905582	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	5q31.2		rs2905582-C	NR	5E-10		0.0123	[0.0084-0.0162] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
1630	chr5	137000718	137000719	rs2905582	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	5q31.2	KLHL3	rs2905582-C	0.192613	1E-10		0.01813054	[0.013-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1630	chr5	137000718	137000719	rs2905582	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q31.2	NR	rs2905582-C	0.222197	2E-11				Affymetrix, Illumina [24653286] (imputed)	N
1630	chr5	137000718	137000719	rs2905582	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	5q31.2	NR	rs2905582-C	0.190156	8E-13		0.016914	[0.012-0.022] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
1630	chr5	137000718	137000719	rs2905582	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	5q31.2	NR	rs2905582-C	0.190123	4E-11		0.015571	[0.011-0.02] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
1630	chr5	137011760	137011761	rs2967790	29381699	Ravenhall M	2018-01-30	PLoS Genet	Novel genetic polymorphisms associated with severe malaria and under selective pressure in North-eastern Tanzania.	Severe malaria (adjusted for sickle cell variant rs334)	449 Tanzanian ancestry cases, 465 Tanzanian ancestry controls	NA	5q31.2	KLHL3, MYOT	rs2967790-?	NR	2E-6	(Additive)		[NR]	Illumina [15200000] (imputed)	N
1630	chr5	137011760	137011761	rs2967790	29381699	Ravenhall M	2018-01-30	PLoS Genet	Novel genetic polymorphisms associated with severe malaria and under selective pressure in North-eastern Tanzania.	Severe malaria	449 Tanzanian ancestry cases, 465 Tanzanian ancestry controls	NA	5q31.2	KLHL3, MYOT	rs2967790-?	NR	6E-7	(Additive)	1.6949153	[NR]	Illumina [15200000] (imputed)	N
1630	chr5	137012170	137012171	rs11745324	31919418	Shah S	2020-01-09	Nat Commun	Genome-wide association and Mendelian randomisation analysis provide insights into the pathogenesis of heart failure.	Heart failure	47,309 European ancestry cases, 930,014 European ancestry controls	NA	5q31.2	KLHL3	rs11745324-G	0.77	2E-8		1.05	[1.03-1.07]	Affymetrix, Illumina [8246881] (imputed)	N
1630	chr5	137018757	137018758	rs56289631	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	5q31.2		rs56289631-?	NR	3E-11				NR [~ 8900000] (imputed)	N
1631	chr5	137158628	137158629	rs554553552	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	5q31.2	RP11-381K20.2	rs554553552-T	0.0032	3E-6		1.0341	[0.6-1.47] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1631	chr5	137158628	137158629	rs554553552	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	5q31.2	RP11-381K20.2	rs554553552-T	0.0032	3E-6		1.0341	[0.6-1.47] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1631	chr5	137167674	137167675	rs10714771	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	5q31.2		rs10714771-T	NR	2E-9		0.0103	[0.007-0.0136] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
1631	chr5	137167674	137167675	rs10714771	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	5q31.2	RP11-381K20.2	rs10714771-T	0.507483	8E-10		0.013589682	[0.0093-0.0179] unit decrease	Affymetrix [93095623] (imputed)	N
1631	chr5	137167674	137167675	rs10714771	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	5q31.2	RP11-381K20.2	rs10714771-T	0.507508	3E-9		0.013164456	[0.0088-0.0175] unit decrease	Affymetrix [93095623] (imputed)	N
1631	chr5	137167674	137167675	rs10714771	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	5q31.2	intergenic	rs10714771-TA		4E-10		0.014	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
1631	chr5	137179923	137179924	rs847821	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q31.2	NR	rs847821-T	0.520754	8E-11				Affymetrix, Illumina [24332387] (imputed)	N
1631	chr5	137179923	137179924	rs847821	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	5q31.2		rs847821-?	NR	1E-11				NR [~ 8900000] (imputed)	N
1631	chr5	137194761	137194762	rs7722600	23583979	den Hoed M	2013-04-14	Nat Genet	Identification of heart rate-associated loci and their effects on cardiac conduction and rhythm disorders.	Heart rate	85,787 European ancestry individuals, 6,568 Indian Asian ancestry indiviudals	88,823 European ancestry individuals	5q31.2	MYOT	rs7722600-A	0.815	3E-7				Affymetrix, Illumina [2516789] (imputed)	N
1632	chr5	137247939	137247940	rs6864727	28416818	Christophersen IE	2017-04-17	Nat Genet	Large-scale analyses of common and rare variants identify 12 new loci associated with atrial fibrillation.	Atrial fibrillation	15,979 European ancestry cases, 102,776 European ancestry controls.	NA		PKD2L2, WNT8A, FAM13B	rs6864727-C	0.31	1E-8		1.08	[1.05-1.11]	Affymetrix, Illumina [11795432] (imputed)	N
1632	chr5	137278681	137278682	rs33956817	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	5q31.2		rs33956817-T	0.9557	2E-8		0.30995658	[0.2-0.42] mmHg decrease	Affymetrix, Illumina [242865] (imputed)	N
1632	chr5	137279433	137279433	rs145517055	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	5q31.2	FAM13B	rs145517055-CA	0.169455	4E-11		0.020023147	[0.014-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1632	chr5	137356012	137356013	rs10479170	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	5q31.2	NR	rs10479170-G	0.214303	7E-9		0.0217254	[0.014-0.029] unit decrease	NR [19129689] (imputed)	N
1633	chr5	137388439	137388440	rs10479177	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	5q31.2	FAM13B	rs10479177-G	0.31	2E-32	(EA)	1.1	[1.08-1.12]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1633	chr5	137402011	137402012	rs55922727	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental longevity (mother's age at death)	52,776 middle-aged British individuals	NA	5q31.2	NR	rs55922727-?	NR	1E-6		0.10643	[0.064-0.149] unit decrease	Affymetrix [9658292] (imputed)	N
1633	chr5	137405828	137405829	rs141654122	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atrial fibrillation/atrial flutter	29,212 European ancestry cases, 400,539 European ancestry controls, 4,150 East Asian ancestry cases, 155,540 East Asian ancestry controls	NA	5q31.2		rs141654122-T	NR	2E-21		0.1046	[0.083-0.126] unit increase	Affymetrix, Illumina [25830072] (imputed)	N
1633	chr5	137419988	137419989	rs2040862	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	5q31.2	WNT8A, NPY6R, MYOT, FAM13B	rs2040862-T	0.178	1E-35		1.11	[1.10-1.13]	Illumina [34740186] (imputed)	N
1633	chr5	137419988	137419989	rs2040862	22544366	Ellinor PT	2012-04-29	Nat Genet	Meta-analysis identifies six new susceptibility loci for atrial fibrillation.	Atrial fibrillation	6,707 European ancestry cases, 52,426 European ancestry controls	5,381 European ancestry casses, 10,030 European ancestry  controls	5q31.2	WNT8A	rs2040862-T	0.18	3E-7		1.12	[1.07-1.17]	Affymetrix, Illumina [~ 2500000] (imputed)	N
1633	chr5	137431500	137431501	rs217256	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	5q31.2	NR	rs217256-C	0.4926	1E-8		0.021	[0.014-0.028] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1633	chr5	137434171	137434172	rs34750263	34274964	Duijvenboden S	2021-07-19	Hum Mol Genet	Genomic and pleiotropic analyses of resting QT interval identifies novel loci and overlap with atrial electrical disorders.	QT interval	24,495 European ancestry men	NA	5q31.2		rs34750263-C	0.69	2E-8		0.035	[0.023-0.047] unit increase	Affymetrix [NR]	N
1633	chr5	137434171	137434172	rs34750263	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	5q31.2	WNT8A, NME5	rs34750263-T	0.31	3E-30		1.09	[1.08-1.11]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1633	chr5	137437484	137437485	rs6892844	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	5q31.2		rs6892844-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1633	chr5	137440089	137440090	rs453638	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q31.2	NR	rs453638-A	0.327548	1E-10				Affymetrix, Illumina [24558453] (imputed)	N
1633	chr5	137444999	137445000	rs12516561	29367611	Gao B	2018-01-24	Sci Rep	Genome-wide association study of paclitaxel and carboplatin disposition in women with epithelial ovarian cancer.	Carboplatin disposition in epthelial ovarian cancer	42 European ancestry cases, 14 Asian ancestry cases	NA	5q31.2	WNT8A, NME5	rs12516561-?	NR	4E-6		1.671	unit increase (EA)	Illumina [610255]	N
1634	chr5	137501002	137501003	rs2269954	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	5q31.2	Intergenic	rs2269954-T	0.644	4E-9	(MTAG)	0.0101	[0.0068-0.0134] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1634	chr5	137501395	137501396	rs2269957	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	5q31.2	Intergenic	rs2269957-A	0.6321	4E-9	(MTAG)	0.008	[0.0053-0.0107] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1634	chr5	137507117	137507120	rs79812184	30898391	Lawrenson K	2019-03-19	Gynecol Oncol	Genome-wide association studies identify susceptibility loci for epithelial ovarian cancer in east Asian women.	Epithelial ovarian cancer	3,238 East Asian ancestry cases, 4,083 East Asian ancestry controls	NA	5q31.2		rs79812184-?	NR	7E-6	(overall)	1.48		Illumina [11595112] (imputed)	N
1634	chr5	137552969	137552970	rs1468333	27798624	Eppinga RN	2016-10-31	Nat Genet	Identification of genomic loci associated with resting heart rate and shared genetic predictors with all-cause mortality.	Resting heart rate	127,919 European ancestry individuals, 2,478 Asian ancestry individuals, 1,734 Black individuals, 684 Mixed ancestry individuals, 1,436 individuals	130,795 European ancestry individuals	5q31.2	CDC23	rs1468333-C	0.63	1E-13		0.2548	[0.19-0.32] unit decrease	Affymetrix [19941912] (imputed)	N
1634	chr5	137573724	137573725	rs10040989	24952745	Arking DE	2014-06-22	Nat Genet	Genetic association study of QT interval highlights role for calcium signaling pathways in myocardial repolarization.	QT interval	Up to 70,389 European ancestry individuals, up to 672 Orcadian individuals	Up to 33,316 European ancestry individuals	5q31.2	GFRA3	rs10040989-A	0.133	5E-11		0.85	[0.6-1.1] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1634	chr5	137577512	137577513	rs13185930	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	5q31.2	NR	rs13185930-A	0.2467	1E-8		1.04	[1.026-1.053]	Affymetrix [15688218] (imputed)	N
1634	chr5	137577512	137577513	rs13185930	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	5q31.2		rs13185930-?	NR	6E-9				NR [~ 8900000] (imputed)	N
1634	chr5	137585340	137585341	rs7735408	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5q31.2		rs7735408-?	NR	5E-12				NR [~ 8900000] (imputed)	N
1634	chr5	137599333	137599334	rs11242417	22610502	Kennedy RB	2012-05-19	Hum Genet	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IL-12p40)	Up to 512 European ancestry individuals, up to 199 African American individuals	NA	5q31.2	GFRA3	rs11242417-C		6E-8	(EA)			Illumina [NR]	N
1634	chr5	137603292	137603293	rs33967909	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	5q31.2		rs33967909-A	NR	8E-13		0.0102	[0.0075-0.0129] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1634	chr5	137608055	137608056	rs12055045	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	5q31.2	GFRA3	rs12055045-T	0.2062	7E-20		0.0213	[0.017-0.026] unit increase	Affymetrix [18391927] (imputed)	N
1635	chr5	137651011	137651012	rs12519407	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	5q31.2	NR	rs12519407-C	NR	6E-21		0.0256	[0.02-0.031] unit increase	Affymetrix [9000000] (imputed)	N
1635	chr5	137654217	137654218	rs11567976	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Intraocular pressure	133,492 European ancestry individuals	NA	5q31.2	CDC25C	rs11567976-C	0.43	5E-7				Affymetrix, Illumina [8002429] (imputed)	N
1635	chr5	137654217	137654218	rs11567976	30846698	Dashti HS	2019-03-07	Nat Commun	Genome-wide association study identifies genetic loci for self-reported habitual sleep duration supported by accelerometer-derived estimates.	Sleep duration	446,118 European ancestry individuals	47,180  adults, 10,554 children or adolescents	5q31.2	NR	rs11567976-T	NR	2E-7		0.66	unit increase	Affymetrix [14661600] (imputed)	N
1635	chr5	137663092	137663093	rs11567972	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	5q31.2	NR	rs11567972-A	0.3447	5E-8				NR [9056863] (imputed)	N
1635	chr5	137664944	137664945	rs11567963	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	5q31.2		rs11567963-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1635	chr5	137673166	137673167	rs3756766	30631343	Rolfe S	2018-12-18	Front Genet	Associations Between Genetic Data and Quantitative Assessment of Normal Facial Asymmetry.	Normal facial asymmetry (deformation magnitude)	3,186 European ancestry individuals	NA	5q31.2	CDC25C	rs3756766-?	NR	5E-6				Illumina [747780]	N
1635	chr5	137673166	137673167	rs3756766	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	5q31.2	FAM53C	rs3756766-A	NR	2E-7	(EA)	1.0661	[1.04-1.09]	Illumina [6627481] (imputed)	N
1635	chr5	137673166	137673167	rs3756766	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	5q31.2	FAM53C	rs3756766-A	NR	1E-8		1.067	[1.04-1.09]	Illumina [6627481] (imputed)	N
1635	chr5	137673166	137673167	rs3756766	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	5q31.2	intergenic	rs3756766-A	NR	8E-8		1.062	[1.04-1.08]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1635	chr5	137673166	137673167	rs3756766	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	5q31.2	NR	rs3756766-A	NR	2E-8		1.07	[NR]	Illumina [7158791] (imputed)	N
1635	chr5	137693994	137693995	rs10058613	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	5q31.2	CDC25C, FAM53C, KDM3B, REEP2	rs10058613-C	0.31499999999999995	8E-7		1.0643846		NR [9372253] (imputed)	N
1635	chr5	137693994	137693995	rs10058613	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar I disorder	14,879 European ancestry cases, 31,358 European ancestry controls	NA	5q31.2	CDC25C, FAM53C, KDM3B, REEP2	rs10058613-C	0.31599999999999995	2E-7		1.0936253	[NR]	NR [9372253] (imputed)	N
1635	chr5	137700250	137700251	rs4835677	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	5q31.2		rs4835677-T	0.29	3E-10		6.32	z score increase	Affymetrix [9061022] (imputed)	N
1635	chr5	137707314	137707315	rs757647	21102462	Elks CE	2010-11-21	Nat Genet	Thirty new loci for age at menarche identified by a meta-analysis of genome-wide association studies.	Menarche (age at onset)	86,142 European ancestry female individuals, 557 Old Order Amish (founder/genetic isolate) female individuals, 1,103 Erasmus Rucphen (founder/genetic isolate) female individuals	Up to 12,813 European ancestry female individuals, 910 Val Borbera (founder/genetic isolate) female individuals, 348 Orcadian (founder/genetic isolate) female individuals, 338 Friuli Venezia Giulia (founder/genetic isolate) female individuals, 322 Carlantino (founder/genetic/isolate) female individuals	5q31.2	KDM3B	rs757647-A	0.22	5E-8		2.4	[1.62-3.18] week decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1635	chr5	137712120	137712121	rs10043984	34002096	Mullins N	2021-05-17	Nat Genet	Genome-wide association study of more than 40,000 bipolar disorder cases provides new insights into the underlying biology.	Bipolar disorder	41,917 European ancestry cases, 371,549 European ancestry controls	NA	5q31.2	KDM3B	rs10043984-C	0.764	4E-8		0.94242	[0.92-0.96]	Affymetrix, Illumina [7549318] (imputed)	N
1635	chr5	137712120	137712121	rs10043984	34002096	Mullins N	2021-05-17	Nat Genet	Genome-wide association study of more than 40,000 bipolar disorder cases provides new insights into the underlying biology.	Bipolar I disorder	25,060 European ancestry cases, 449,978 European ancestry controls	NA	5q31.2	NR	rs10043984-C	0.765	1E-9		0.92238	[0.9-0.95]	Affymetrix, Illumina [7549318] (imputed)	N
1635	chr5	137712120	137712121	rs10043984	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Schizophrenia (MTAG)	at least 33,640 European ancestry cases, at least 43,456 European ancestry controls	NA	5q31.2	NR	rs10043984-T	0.2614	4E-8		0.067151085	[0.043-0.091] unit increase	NR [NR]	N
1635	chr5	137712120	137712121	rs10043984	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	67,764 individuals	NA	5q31.2	NR	rs10043984-?		5E-8				NR [8377093]	N
1635	chr5	137712120	137712121	rs10043984	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Bipolar disorder (MTAG)	65,682 individuals	NA	5q31.2	NR	rs10043984-?		2E-8				NR [520857]	N
1635	chr5	137712120	137712121	rs10043984	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	5q31.2	KDM3B, FAM53C	rs10043984-?		2E-9				NR [6786993] (imputed)	N
1635	chr5	137725002	137725003	rs17171818	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	5q31.2	KDM3B, BRD8	rs17171818-C	0.77	9E-14		0.04	[0.028-0.052] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
1635	chr5	137748876	137748877	rs35131895	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	5q31.2	BRD8, CDC23, CDC25C, EGR1, FAM13B, FAM53C, GFRA3, KDM3B, KIF20A, NME5, PKD2L2, REEP2, WNT8A	rs35131895-?		1E-8		1.0638298	[1.04-1.09]	Affymetrix, Illumina [NR]	N
1636	chr5	137763797	137763798	rs17599026	27515689	Kerns SL	2016-07-20	EBioMedicine	Meta-analysis of Genome Wide Association Studies Identifies Genetic Markers of Late Toxicity Following Radiotherapy for Prostate Cancer.	Response to radiotherapy in prostate cancer (toxicity, urinary frequency)	1,409 European ancestry individuals	NA	5q31.2	FAM53C, CDC25C, KDM3B	rs17599026-T	0.08	4E-8		3.12	[2.08-4.69]	NR [~ 38000000] (imputed)	N
1636	chr5	137769575	137769576	rs113322698	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Sleep duration	384,317 European ancestry individuals	NA	5q31.2		rs113322698-A	0.3424	2E-8		0.01446	[0.0094-0.0195] unit increase	Affymetrix, Illumina [10862567] (imputed)	N
1636	chr5	137775580	137775581	rs982085	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	5q31.2	NR	rs982085-?	NR	7E-10				Affymetrix [~ 8270000] (imputed)	N
1636	chr5	137775580	137775581	rs982085	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	5q31.2	NR	rs982085-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
1636	chr5	137775580	137775581	rs982085	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	5q31.2		rs982085-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1636	chr5	137782114	137782115	rs4835796	25461247	Lehmann DS	2015-02-01	Pharmacogenet Genomics	Genome-wide association study of virologic response with efavirenz-containing or abacavir-containing regimens in AIDS clinical trials group protocols.	Response to abacavir-containing treatment in HIV-1 infection (virologic failure)	Up 346 European ancestry individuals, Up to 265 Black individuals, Up to 175 Hispanic individuals	NA	5q31.2	NR	rs4835796-G	NR	6E-7	(phenotype 1)	2.89	[NR]	Illumina [> 8000000] (imputed)	N
1636	chr5	137786167	137786168	rs397999383	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	5q31.2		rs397999383-A	NR	4E-11		0.0161	[0.011-0.021] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1636	chr5	137797379	137797380	rs7729723	22959728	Ahmeti KB	2012-09-05	Neurobiol Aging	Age of onset of amyotrophic lateral sclerosis is modulated by a locus on 1p34.1.	Amyotrophic lateral sclerosis (C9orf72 mutation interaction)	4,243 European ancestry cases	NA	5q31.2	EGR1, REEP2	rs7729723-?	0.47	2E-6		1.2	[1.14-1.38]	Illumina [254145]	N
1636	chr5	137802403	137802404	rs11743810	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	5q31.2	NR	rs11743810-T	0.559615	5E-15		0.00655199	[0.0049-0.0082] unit increase	Affymetrix [16582909] (imputed)	N
1636	chr5	137802403	137802404	rs11743810	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	5q31.2	NR	rs11743810-T	0.5600149999999999	4E-11		0.00813863	[0.0059-0.0104] unit increase	Affymetrix [16582621] (imputed)	N
1636	chr5	137802403	137802404	rs11743810	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	5q31.2	NR	rs11743810-T	0.559615	4E-16		0.00773245	[0.0059-0.0096] unit increase	Affymetrix [16582965] (imputed)	N
1636	chr5	137802403	137802404	rs11743810	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	5q31.2	NR	rs11743810-T	0.5600149999999999	2E-12		0.00893646	[0.0065-0.0114] unit increase	Affymetrix [16582614] (imputed)	N
1636	chr5	137807259	137807260	rs13185520	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	5q31.2	NR	rs13185520-A	0.574867	9E-10		0.0078686	[0.0053-0.0104] unit increase	Affymetrix [16578495] (imputed)	N
1636	chr5	137818915	137818916	rs6870458	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	5q31.2	NR	rs6870458-T	0.548814	4E-13		0.0229601	[0.017-0.029] unit increase	Affymetrix [16577313] (imputed)	N
1636	chr5	137823155	137823156	rs112667817	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	5q31.2	NR	rs112667817-C	0.8789	6E-9		0.0609	[0.04-0.081] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1636	chr5	137832030	137832031	rs10078434	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Cerebrospinal AB1-42 levels in Alzheimer's disease dementia	190 European ancestry AD dementia cases	NA	5q31.2	KDM3B, REEP2, EGR1, RPL7P19, ETF1, HSPA9, SNORD63	rs10078434-T	0.09	7E-8		1.1	[0.73-1.47] unit decrease	Illumina [8344766] (imputed)	N
1636	chr5	137838121	137838122	rs11750854	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	5q31.2	ETF1	rs11750854-A	0.45	3E-11		0.0079	[0.0055-0.0103] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
1636	chr5	137840859	137840860	rs13164092	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	5q31.2	NR	rs13164092-?	NR	1E-9		1.0572836	[1.04-1.08]	Affymetrix, Illumina [12447948] (imputed)	N
1636	chr5	137840859	137840860	rs13164092	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	5q31.2	ETF1	rs13164092-G	NR	2E-10		1.0638298	[1.04-1.08]	Illumina [6627481] (imputed)	N
1636	chr5	137840859	137840860	rs13164092	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	5q31.2	EGR1, ETF1	rs13164092-G	NR	1E-9		1.0604454	[1.04-1.08]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1636	chr5	137849566	137849567	rs555031147	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	5q31.2	ETF1	rs555031147-A	0.9953	7E-6		0.8301	[0.47-1.19] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1636	chr5	137850058	137850059	rs154067	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	California verbal learning test score	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	5q31.2	ETF1	rs154067-G	NR	4E-6		1.79973	[1.04-2.56] unit increase	Illumina [> 6200000] (imputed)	N
1636	chr5	137851191	137851192	rs3849046	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Schizophrenia (MTAG)	at least 33,640 European ancestry cases, at least 43,456 European ancestry controls	NA	5q31.2	NR	rs3849046-T	0.5089	3E-8		0.06028074	[0.039-0.082] unit increase	NR [NR]	N
1636	chr5	137851191	137851192	rs3849046	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	65,967 individuals	NA	5q31.2	NR	rs3849046-?		2E-8				NR [8377093]	N
1636	chr5	137851191	137851192	rs3849046	31268507	Periyasamy S	2019-07-03	JAMA Psychiatry	Association of Schizophrenia Risk With Disordered Niacin Metabolism in an Indian Genome-wide Association Study.	Schizophrenia	816 Indian ancestry cases, 900 Indian ancestry controls, 505 Indian ancestry cases and 871 Indian ancestry controls from 405 families, up to 36,989 European and unknown ancestry cases, up to 113,075 European and unknown ancestry controls	NA	5q31.2	NR	rs3849046-?	NR	2E-9				Illumina [up to 5582932] (imputed)	N
1636	chr5	137851191	137851192	rs3849046	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	5q31.2	ETF1	rs3849046-T	NR	1E-8	(EA)	1.0649627	[1.04-1.09]	Illumina [6627481] (imputed)	N
1636	chr5	137851191	137851192	rs3849046	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	5q31.2	EGR1, ETF1, HSPA9, REEP2, SNORD63	rs3849046-T		2E-9		1.06	[1.04-1.08]	Affymetrix, Illumina [NR]	N
1636	chr5	137851191	137851192	rs3849046	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	5q31.2	NR	rs3849046-T	NR	6E-9		1.06	[NR]	Illumina [7158791] (imputed)	N
1636	chr5	137851191	137851192	rs3849046	25056061	Ripke S	2014-07-22	Nature	Biological insights from 108 schizophrenia-associated genetic loci.	Schizophrenia	32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	1,513 European ancestry cases, 66,236 European ancestry controls	5q31.2	CDC25C, CTNNA1, EGR1, ETF1, FAM53C, GFRA3, HSPA9, KDM3B, REEP2	rs3849046-T	0.523	5E-9		1.063	[1.042-1.085]	Affymetrix, Illumina [9005918] (imputed)	N
1636	chr5	137854923	137854924	rs13155345	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	5q31.2		rs13155345-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1636	chr5	137855304	137855305	rs13169274	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Schizophrenia (MTAG)	940,613 European ancestry individuals	NA			rs13169274-?	NR	1E-8				NR [2625067]	N
1636	chr5	137855304	137855305	rs13169274	29483656	Pardinas AF	2018-02-26	Nat Genet	Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.	Schizophrenia	40,675 European ancestry cases, 64,643 European ancestry controls	1,651 European ancestry cases, 4,111 cases, 142,717 European ancestry controls, 11,507 controls		ETF1, HSPA9, SNORD63	rs13169274-?	NR	7E-10		1.0615711	[1.04-1.08]	Illumina [8000000] (imputed)	N
1636	chr5	137858066	137858067	rs154073	33893285	Guindo-Martinez M	2021-04-23	Nat Commun	The impact of non-additive genetic associations on age-related complex diseases.	Asthma	9,209 European ancestry cases, 47,428 European ancestry controls	NA	5q31.2		rs154073-T	0.4288257	6E-8		1.09		Affymetrix [15607971] (imputed)	N
1637	chr5	137913881	137913882	rs409273	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	5q31.2	NR	rs409273-?	NR	5E-7		5.009	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1637	chr5	137936904	137936905	rs1811371	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	5q31.2		rs1811371-?	NR	7E-10				NR [~ 8900000] (imputed)	N
1637	chr5	137938572	137938573	rs4835691	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	67,764 individuals	NA	5q31.2	NR	rs4835691-?		5E-9				NR [8377093]	N
1637	chr5	137960526	137960527	rs190120440	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q31.2	NR	rs190120440-T	0.0122	5E-9	(CKB)	0.03064	NR unit increase	Illumina [1671387] (imputed)	N
1637	chr5	137960526	137960527	rs190120440	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q31.2	NR	rs190120440-T	0.0122	5E-10	(CAPN2)	0.05797	NR unit increase	Illumina [1671387] (imputed)	N
1637	chr5	137960526	137960527	rs190120440	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q31.2	NR	rs190120440-T	0.0122	2E-8	(FLNA)	1.077	NR unit increase	Illumina [1671387] (imputed)	N
1637	chr5	137960526	137960527	rs190120440	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q31.2	NR	rs190120440-T	0.0122	2E-11	(CNN2)	0.02087	NR unit increase	Illumina [1671387] (imputed)	N
1637	chr5	137960526	137960527	rs190120440	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q31.2	NR	rs190120440-T	0.0122	1E-9	(RSU1)	0.05637	NR unit increase	Illumina [1671387] (imputed)	N
1637	chr5	137960526	137960527	rs190120440	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q31.2	NR	rs190120440-T	0.0122	1E-8	(DPYSL2)	0.2801	NR unit increase	Illumina [1671387] (imputed)	N
1637	chr5	138007525	138007526	rs114916656	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	5q31.2	CTNNA1	rs114916656-T	0.077	5E-8		0.0122	[0.0079-0.0165] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
1637	chr5	138008458	138008459	rs113624607	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Antisaccade task score	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	5q31.2	CTN1	rs113624607-T	NR	6E-6		0.036635414	[0.02-0.053] unit increase	Illumina [> 6200000] (imputed)	N
1638	chr5	138069635	138069636	rs67514550	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	5q31.2	NR	rs67514550-C	0.938216	1E-8		0.0223114	[0.015-0.03] unit decrease	NR [NR]	N
1639	chr5	138185625	138185626	rs76786411	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		CTNNA1	rs76786411-?	NR	8E-10		1.4565	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1639	chr5	138236940	138236941	rs10043722	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	5q31.2	CTNNA1	rs10043722-A	0.593	6E-12		0.0083	[0.0059-0.0107] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
1640	chr5	138335411	138335412	rs34035808	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Myringotomy	4,138 European ancestry cases, 85,089 European ancestry controls	NA	5q31.2	NR	rs34035808-?	NR	9E-6		1.1995	[0.6-1.8] unit decrease	Illumina [at least 560000] (imputed)	N
1640	chr5	138378393	138378394	rs115800498	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q31.2	NR	rs115800498-A	0.01045	2E-8	(DDB1)	0.2281	NR unit increase	Illumina [1671387] (imputed)	N
1640	chr5	138406077	138406078	rs7701116	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	5q31.2	SIL1, CTNNA1, LRRTM2, MATR3, SNHG4, SNORA74A, PAIP2, SLC23A1, LOC105379194, MZB1, PROB1, SPATA24, DNAJC18, ECSCR	rs7701116-?		4E-7	(dominant)	0.165	[0.043-0.287] unit increase	Illumina [1492601] (imputed)	N
1640	chr5	138406077	138406078	rs7701116	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	5q31.2	SIL1, CTNNA1, LRRTM2, MATR3, SNHG4, SNORA74A, PAIP2, SLC23A1, LOC105379194, MZB1, PROB1, SPATA24, DNAJC18, ECSCR	rs7701116-?		2E-6	(heterogeneous)	0.156	[0.091-0.221] unit increase	Illumina [1492601] (imputed)	N
1641	chr5	138417053	138417054	rs11242445	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	5q31.2	NA	rs11242445-T		5E-10		0.0117279	[0.008-0.0154] unit decrease	Illumina [13288253] (imputed)	N
1641	chr5	138474787	138474788	rs6866496	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5q31.2	MATR3	rs6866496-?	NR	2E-6	(PC 36:4)	0.6679668	[0.39-0.95] unit increase	Affymetrix [at least 2500000] (imputed)	N
1642	chr5	138668503	138668504	rs10052399	33495597	Harper AR	2021-01-25	Nat Genet	Common genetic variants and modifiable risk factors underpin hypertrophic cardiomyopathy susceptibility and expressivity.	Hypertrophic cardiomyopathy	233 African ancestry cases, 122 Hispanic/Latino cases, 70 East Asian ancestry cases, 2,196 European ancestry cases, 138 South Asian ancestry cases, 21 cases, 1,331 African ancestry controls, 170 Hispanic/Latino controls, 333 East Asian ancestry controls, 42,902 European ancestry controls, 1,727 South Asian ancestry controls, 1,023 controls	1,643 European or unknown ancestry cases, 6,628 European or unknown ancestry controls	5q31.2	PROB1	rs10052399-T	0.264	6E-8		0.206	[0.13-0.28] unit increase	Affymetrix [8590397] (imputed)	N
1643	chr5	138703553	138703554	rs112134293	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	5q31.2	SLC23A1, CTB-43P18.1, PAIP2	rs112134293-C	0.00239999999999996	1E-9		0.13917612	[0.094-0.184] unit increase	Affymetrix [93095623] (imputed)	N
1643	chr5	138703553	138703554	rs112134293	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	5q31.2	SLC23A1, CTB-43P18.1, PAIP2	rs112134293-C	0.00239199999999995	9E-11		0.14836977	[0.1-0.19] unit increase	Affymetrix [93095623] (imputed)	N
1643	chr5	138703553	138703554	rs112134293	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	5q31.2	SLC23A1, CTB-43P18.1, PAIP2	rs112134293-C	0.00239199999999995	2E-11		0.15268323	[0.11-0.2] unit increase	Affymetrix [93095623] (imputed)	N
1643	chr5	138715501	138715502	rs33972313	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	5q31.2	NR	rs33972313-T	NR	3E-9		0.0382	[0.026-0.051] unit decrease	Affymetrix [9000000] (imputed)	N
1643	chr5	138715501	138715502	rs33972313	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	5q31.2	NR	rs33972313-T	NR	1E-9		0.039	[0.026-0.052] unit increase	Affymetrix [9000000] (imputed)	N
1643	chr5	138715501	138715502	rs33972313	33203707	Zheng JS	2020-11-17	Diabetes Care	Plasma Vitamin C and Type 2 Diabetes: Genome-Wide Association Study and Mendelian Randomization Analysis in European Populations.	Vitamin C levels	52,018 European ancestry individuals	NA	5q31.2	SLC23A1	rs33972313-C	0.968	5E-90		0.36	[0.32-0.4] unit increase	Affymetrix, Illumina [up to 7933258] (imputed)	N
1643	chr5	138723407	138723408	rs62001866	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	5q31.2		rs62001866-A	NR	3E-9		0.0309	[0.021-0.041] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
1643	chr5	138730036	138730037	rs11748963	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5q31.2	SLC23A1, MZB1, PROB1, SPATA24	rs11748963-T	0.720914	7E-14	(-16 ms)	0.0461282	[0.034-0.058] unit increase	Affymetrix [10000000] (imputed)	N
1643	chr5	138730036	138730037	rs11748963	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5q31.2	SLC23A1, MZB1, PROB1, SPATA24	rs11748963-T	0.720914	1E-9	(-20 ms)	0.036798	[0.024-0.049] unit increase	Affymetrix [10000000] (imputed)	N
1643	chr5	138730036	138730037	rs11748963	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5q31.2	SLC23A1, MZB1, PROB1, SPATA24	rs11748963-T	0.720914	1E-14	(-14 ms)	0.0472026	[0.035-0.059] unit increase	Affymetrix [10000000] (imputed)	N
1643	chr5	138730036	138730037	rs11748963	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5q31.2	SLC23A1, MZB1, PROB1, SPATA24	rs11748963-T	0.720914	1E-12	(-18 ms)	0.0432837	[0.031-0.056] unit increase	Affymetrix [10000000] (imputed)	N
1643	chr5	138743255	138743256	rs4385202	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Hypertrophic cardiomyopathy (MTAG)	1,733 European ancestry cases, 6,628 European ancestry controls	NA	5q31.2	DNAJC18	rs4385202-A	0.306	3E-9		1.2523227	1.15-1.37	Illumina [6530233] (imputed)	N
1643	chr5	138743255	138743256	rs4385202	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Hypertrophic cardiomyopathy	1,733 European ancestry cases, 6,628 European ancestry controls	2,694 European ancestry cases, 47,486 European ancestry controls	5q31.2	DNAJC18	rs4385202-A	0.306	5E-10		1.1869837	1.12-1.25	Illumina [6530233] (imputed)	N
1643	chr5	138748695	138748696	rs9285942	31219150	Ekenberg C	2019-06-13	J Infect Dis	Single nucleotide polymorphisms in HLA alleles are associated with HIV-1 viral load in demographically diverse, ART-naive participants from the START trial.	Pre-treatment viral load in HIV-1 infection	1,398 European ancestry individuals, 572 Black individuals, 418 Hispanic individuals, 13 Asian ancestry individuals, 39 individuals	NA	5q31.2	DNAJC18	rs9285942-A	0.057	2E-16		0.42	[0.32-0.52] unit decrease	Affymetrix [339439]	N
1643	chr5	138775172	138775173	rs3923059	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	5q31.2		rs3923059-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1643	chr5	138775300	138775301	rs3923060	29703947	Jawinski P	2018-04-27	Mol Psychiatry	Human brain arousal in the resting state: a genome-wide association study.	Resting-state electroencephalogram vigilance	1,877 European ancestry individuals	NA	5q31.2	DNAJC18	rs3923060-C	0.739	9E-6	(Mean vigilance)	0.155	[0.087-0.223] unit decrease	Affymetrix [8042262] (imputed)	N
1644	chr5	138850904	138850905	rs13181561	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	5q31.2	NR	rs13181561-G	0.28	2E-7		1.09	[1.05-1.13]	Illumina [8468885] (imputed)	N
1644	chr5	138850904	138850905	rs13181561	23144326	Kim DK	2012-11-09	Am J Respir Crit Care Med	Genome-wide association analysis of blood biomarkers in chronic obstructive pulmonary disease.	Chronic obstructive pulmonary disease-related biomarkers	Up to 1,951 European ancestry smokers	NA	5q31.2	AC138517.1	rs13181561-G	0.27	6E-6	(FG)			Illumina [588352]	N
1644	chr5	138850904	138850905	rs13181561	22610502	Kennedy RB	2012-05-19	Hum Genet	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IFN-alpha)	Up to 512 European ancestry individuals, up to 199 African American individuals	NA	5q31.2	ECSM2, TMEM173	rs13181561-G		3E-14	(EA)			Illumina [NR]	N
1644	chr5	138854202	138854203	rs55792153	34532061	Hodel F	2021-06-11	Virus Evol	Human genomics of the humoral immune response against polyomaviruses.	Anti-Merkel cell polyomavirus IgG seropositivity	8,091 European ancestry antibody-positive cases, up to 3,623 European ancestry antibody-negative controls	NA	5q31.2		rs55792153-?	NR	3E-9				Affymetrix [NR] (imputed)	N
1644	chr5	138854202	138854203	rs55792153	33204752	Butler-Laporte G	2020-09-24	Open Forum Infect Dis	Genetic Determinants of Antibody-Mediated Immune Responses to Infectious Diseases Agents: A Genome-Wide and HLA Association Study.	Anti-Merkel cell polyomavirus IgG seropositivity	8,735 White British ancestry individuals	NA	5q31.2	TMEM173	rs55792153-A	0.255	4E-10		0.05	[0.034-0.066] unit increase	NR [25472218] (imputed)	N
1644	chr5	138861077	138861078	rs11554776	25854761	Zuo X	2015-04-09	Nat Commun	Whole-exome SNP array identifies 15 new susceptibility loci for psoriasis.	Psoriasis	11,245 Han Chinese ancestry cases, 11,177 Han Chinese ancestry controls	6,369 Han Chinese ancestry cases, 13,969 Han Chinese ancestry controls	5q31.2	TMEM173	rs11554776-G	NR	2E-6	(fixed)	1.0753845		Illumina [87827]	N
1644	chr5	138861145	138861146	rs7447927	25129146	Wu C	2014-08-17	Nat Genet	Joint analysis of three genome-wide association studies of esophageal squamous cell carcinoma in Chinese populations.	Esophageal squamous cell carcinoma	5,337 Han Chinese ancestry cases, 5,787 Han Chinese ancestry controls	9,654 Han Chinese ancestry cases, 10,058 Han Chinese ancestry  controls	5q31.2	TMEM173	rs7447927-C	0.54	8E-20		1.18	[1.14-1.22]	Affymetrix, Illumina [7556215] (imputed)	N
1644	chr5	138865422	138865423	rs7444313	34532061	Hodel F	2021-06-11	Virus Evol	Human genomics of the humoral immune response against polyomaviruses.	Merkel cell polyomavirus VP1 antibody levels	8,091 European ancestry individuals	NA	5q31.2		rs7444313-?	NR	6E-15				Affymetrix [NR] (imputed)	N
1644	chr5	138865422	138865423	rs7444313	33204752	Butler-Laporte G	2020-09-24	Open Forum Infect Dis	Genetic Determinants of Antibody-Mediated Immune Responses to Infectious Diseases Agents: A Genome-Wide and HLA Association Study.	Merkel cell polyomavirus VP1 antibody levels	5,915 White British ancestry individuals	NA	5q31.2	TMEM173	rs7444313-G	0.273	7E-15		0.16	[0.12-0.20] unit increase	NR [25472218] (imputed)	N
1644	chr5	138910790	138910791	rs11742774	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	5q31.2		rs11742774-C	NR	1E-22		0.023	[0.018-0.028] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1644	chr5	138916009	138916010	rs28817902	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5q31.2		rs28817902-?	NR	1E-29				NR [~ 8900000] (imputed)	N
1645	chr5	138949361	138949362	rs261532	22610502	Kennedy RB	2012-05-19	Hum Genet	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IFN-alpha)	Up to 512 European ancestry individuals, up to 199 African American individuals	NA	5q31.2	UBE2D2	rs261532-A		3E-7	(EA)			Illumina [NR]	N
1645	chr5	138964816	138964818	rs112347796	32109421	Li C	2020-02-20	Am J Hum Genet	Genome-Wide Association Analysis in Humans Links Nucleotide Metabolism to Leukocyte Telomere Length.	Leukocyte telomere length	78,592 European ancestry individuals	NA	5q31.2	UBE2D2	rs112347796-?	0.048865	7E-6		0.069076	[0.039-0.099] unit increase	Affymetrix, Illumina, Perlegen [up to 30071938] (imputed)	N
1645	chr5	139034142	139034143	rs73790670	31564439	Fang H	2019-09-26	Am J Hum Genet	Harmonizing Genetic Ancestry and Self-identified Race/Ethnicity in Genome-wide Association Studies.	Height	up to 248,507 non-Hispanic white individuals, up to 68,155 non-Hispanic black individuals, up to 25,847 Hispanic individuals, up to 3,054 Asian ancestry individuals	NA	5q31.2	NR	rs73790670-A	NR	6E-9	(EA)	0.1	NR unit increase	Affymetrix [723305]	N
1645	chr5	139034142	139034143	rs73790670	31564439	Fang H	2019-09-26	Am J Hum Genet	Harmonizing Genetic Ancestry and Self-identified Race/Ethnicity in Genome-wide Association Studies.	Height	up to 248,507 non-Hispanic white individuals, up to 68,155 non-Hispanic black individuals, up to 25,847 Hispanic individuals, up to 3,054 Asian ancestry individuals	NA	5q31.2	NR	rs73790670-A	NR	5E-6				Affymetrix [723305]	N
1645	chr5	139051014	139051015	rs10040658	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	5q31.2	CXXC5	rs10040658-A	NR	1E-9		0.0194632	[0.013-0.026] unit increase	Affymetrix [323123] (imputed)	N
1645	chr5	139059016	139059017	rs3822742	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	5q31.2	CXXC5	rs3822742-A	0.3706	1E-16		0.0162	[0.012-0.02] unit increase	Affymetrix [18391927] (imputed)	N
1645	chr5	139059016	139059017	rs3822742	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	5q31.2	NR	rs3822742-?	NR	5E-9	(male)	0.21204	[0.14-0.28] unit increase	Affymetrix [7794483] (imputed)	N
1645	chr5	139059016	139059017	rs3822742	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	5q31.2	NR	rs3822742-?	NR	3E-13		0.16722	[0.12-0.21] unit increase	Affymetrix [7794483] (imputed)	N
1645	chr5	139059561	139059562	rs6580200	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q31.2	NR	rs6580200-G	0.287245	3E-15				Affymetrix, Illumina [24588908] (imputed)	N
1645	chr5	139059561	139059562	rs6580200	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	5q31.2	NR	rs6580200-G	0.331766	6E-17		0.016538	[0.013-0.02] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1645	chr5	139065179	139065180	rs35123781	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	5q31.2	NR	rs35123781-G	NR	4E-6		1.0526316	[NR]	Illumina [7158791] (imputed)	N
1646	chr5	139069628	139069628	rs34560923	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	5q31.2	CTB-35F21.1	rs34560923-TG	0.320807	1E-11		0.016590755	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1646	chr5	139069628	139069628	rs34560923	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	5q31.2	CTB-35F21.1	rs34560923-TG	0.320817	1E-11		0.016497873	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1646	chr5	139070280	139070281	rs148570926	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Ovarian cancer	647 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	5q31.2	Intergenic	rs148570926-?		3E-6		2.9	[1.86-4.52]	Illumina [7645193] (imputed)	N
1646	chr5	139070397	139070398	rs71579590	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	5q31.2		rs71579590-C	NR	8E-16		0.0239	[0.018-0.03] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1646	chr5	139073142	139073143	rs356429	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	5q31.2	intergenic	rs356429-T	0.27231	6E-6		0.006399	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1646	chr5	139073142	139073143	rs356429	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	5q31.2	intergenic	rs356429-T	0.27231	4E-7	(females)	0.01046	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1646	chr5	139073142	139073143	rs356429	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	5q31.2	intergenic	rs356429-T	0.27231	9E-7		0.01225	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1646	chr5	139073142	139073143	rs356429	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	5q31.2	intergenic	rs356429-T	0.27231	8E-6	(females)	0.01635	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1646	chr5	139080744	139080745	rs13174863	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		5q31.2	CXXC5	rs13174863-A	0.851925	2E-12		0.0136233	[0.0098-0.0174] unit decrease	Affymetrix [12370749]	N
1646	chr5	139080744	139080745	rs13174863	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	5q31.2	NR	rs13174863-?	NR	4E-15				Affymetrix [~ 8270000] (imputed)	N
1646	chr5	139080744	139080745	rs13174863	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	5q31.2		rs13174863-?	NR	9E-15				NR [~ 8900000] (imputed)	N
1646	chr5	139080744	139080745	rs13174863	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	5q31.2	NA	rs13174863-A	0.8542	2E-17		0.0197	[0.015-0.024] unit decrease	NR [~ 27400000] (imputed)	N
1646	chr5	139080744	139080745	rs13174863	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	5q31.2	NA	rs13174863-A	0.8542	2E-17		0.0197	[0.015-0.024] unit decrease	NR [~ 27400000] (imputed)	N
1646	chr5	139080744	139080745	rs13174863	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	5q31.2	SNHG4, MATR3, SNORA74A, PAIP2, SLC23A1, PROB1, SPATA24, MZB1, DNAJC18, ECSCR, TMEM173, UBE2D2, PSD2, NRG2, PURA, IGIP, CYSTM1	rs13174863-A	0.834126628762897	6E-7		0.019467039	unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1646	chr5	139080744	139080745	rs13174863	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	5q31.2	CXXC5	rs13174863-G	0.169	5E-6	(EA, women)	0.026	[0.015-0.037] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1646	chr5	139084091	139084092	rs7728095	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	5q31.2		rs7728095-G	NR	1E-22		0.018	[0.014-0.022] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1646	chr5	139092313	139092314	rs147867139	30557369	Yodsurang V	2018-12-17	PLoS One	Genome-wide association study (GWAS) of ovarian cancer in Japanese predicted regulatory variants in 22q13.1.	Ovarian cancer	681 Japanese ancestry cases, 17,492 Japanese ancestry controls	NA	5q31.2	CXXC5	rs147867139-A	0.0175	8E-6		2.197802	[1.56-3.11]	Illumina [7521072] (imputed)	N
1646	chr5	139095102	139095103	rs260730	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	5q31.2		rs260730-T	NR	9E-13		0.0159	[0.012-0.02] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1646	chr5	139100597	139100598	rs165199	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5q31.2		rs165199-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1646	chr5	139106980	139106981	rs356480	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	5q31.2	CTB-35F21.1	rs356480-G	NR	2E-9		0.0208	[0.014-0.028] unit increase	Affymetrix [321016] (imputed)	N
1646	chr5	139122246	139122247	rs184378308	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	5q31.2	Intergenic	rs184378308-A	1.0	2E-6	(AA)	96.412	NR unit increase	Illumina [NR] (imputed)	N
1647	chr5	139282866	139282867	rs7707751	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	5q31.2	NRG2	rs7707751-T	NR	8E-9		0.0229322	[0.015-0.031] unit increase	Affymetrix [321016] (imputed)	N
1647	chr5	139323256	139323257	rs2060296	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	5q31.2		rs2060296-?	NR	6E-9				NR [~ 8900000] (imputed)	N
1648	chr5	139390376	139390377	rs155346	28922980	Konte B	2017-09-19	World J Biol Psychiatry	A genome-wide association study of early gamma-band response in a schizophrenia case-control sample.	Disturbances of the gamma-frequency band of electroencephalography measures in schizophrenia	74 European ancestry cases, 241 European ancestry controls	NA	5q31.2	NRG2	rs155346-C	NR	4E-6		0.25	[0.15-0.35] unit decrease	Illumina [304635]	N
1648	chr5	139402341	139402342	rs2974422	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	5q31.2	NRG2	rs2974422-C	0.608419235284757	7E-6	(G_unclassified_F_Erysipelotrichaceae_HB)	0.250716	[0.14-0.36] unit increase	Illumina [7711310] (imputed)	N
1648	chr5	139425009	139425010	rs182055959	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Proheparin-binding EGF-like growth factor levels	21,758 European ancestry individuals	9,173 individuals	5q31.2		rs182055959-T	0.9953	2E-45		1.2572	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1649	chr5	139477503	139477504	rs269771	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	5q31.2	Intergenic	rs269771-C	0.8168	1E-9	(MTAG)	0.0129	[0.0088-0.017] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1649	chr5	139482974	139482975	rs77649854	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	5q31.3	Intergenic	rs77649854-T	0.1844	7E-9	(MTAG)	0.0133	[0.0088-0.0178] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1649	chr5	139522327	139522328	rs156089	33169155	Bigdeli TB	2020-11-10	Schizophr Bull	Genome-Wide Association Studies of Schizophrenia and Bipolar Disorder in a Diverse Cohort of US Veterans.	Schizophrenia	37,759 European ancestry cases, 7,509 African American cases, 1,234 Latino cases, 22,778 East Asian ancestry cases, 91,590 European ancestry controls, 8,337 African American controls, 3,090 Latino controls, 35,362 East Asian ancestry controls	NA	5q31.3	IGIP	rs156089-C	NR	2E-8		1.05	[1.03-1.07]	Affymetrix [up to 49134253] (imputed)	N
1649	chr5	139523683	139523684	rs155949	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	5q31.3	Intergenic	rs155949-A	0.4692	1E-10		0.0147	[0.01-0.019] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1649	chr5	139523683	139523684	rs155949	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	5q31.3	NR	rs155949-?	NR	1E-6		0.0084385	[0.005-0.0119] unit decrease	Affymetrix [805426] (imputed)	N
1649	chr5	139529986	139529987	rs155943	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	5q31.3	Intergenic	rs155943-A	0.4751	9E-12	(MTAG)	0.009	[0.0065-0.0115] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1649	chr5	139533562	139533563	rs2436396	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	5q31.3	NR	rs2436396-A	0.296911	3E-10		0.0214194	[0.015-0.028] unit decrease	NR [19129689] (imputed)	N
1649	chr5	139537031	139537032	rs270164	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	5q31.3		rs270164-T	NR	5E-8		0.0116	[0.0075-0.0157] unit decrease	Affymetrix, Illumina [20538307] (imputed)	N
1649	chr5	139545747	139545748	rs4463213	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	5q31.3	NR	rs4463213-G	0.449304	4E-14		0.047799367	[0.035-0.06] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1649	chr5	139545747	139545748	rs4463213	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	5q31.3	Intergenic	rs4463213-A	0.5531	3E-14		0.0218	[0.016-0.027] unit increase	Affymetrix, Illumina [10100000] (imputed)	N
1649	chr5	139545747	139545748	rs4463213	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	5q31.3	NR	rs4463213-A	NR	3E-12		6.978	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1649	chr5	139553574	139553574	rs4044173	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	5q31.3	NR	rs4044173-TGA	NR	3E-9		0.0173	[0.012-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
1649	chr5	139553574	139553574	rs4044173	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	5q31.3	NR	rs4044173-TGA	NR	3E-9		0.0174	[0.012-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
1649	chr5	139558583	139558584	rs11748023	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	5q31.3	CYSTM1	rs11748023-T	NR	6E-11		0.020173358	[0.014-0.026] unit increase	Affymetrix [NR]	N
1649	chr5	139581772	139581773	rs421211	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	5q31.3	ENSG00000250069	rs421211-A	NR	4E-9		5.897	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1650	chr5	139597909	139597910	rs17118739	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	5q31.3	C5orf32, CYSTM1	rs17118739-?	NR	3E-9		0.0185	[0.013-0.024] unit decrease	Affymetrix [5701386] (imputed)	N
1650	chr5	139614794	139614795	rs4913077	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	5q31.3	Intergenic	rs4913077-T	0.5512	5E-20	(MTAG)	0.0211	[0.017-0.026] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1650	chr5	139629449	139629450	rs6869910	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	5q31.3	Intergenic	rs6869910-T	0.542	2E-22	(MTAG)	0.0175	[0.014-0.021] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1650	chr5	139629449	139629450	rs6869910	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	5q31.3	Intergenic	rs6869910-T	0.542	1E-16		0.0162	[0.012-0.02] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1650	chr5	139629449	139629450	rs6869910	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	5q31.3	Intergenic	rs6869910-T	0.5426	5E-20	(MTAG)	0.0152	[0.012-0.019] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1650	chr5	139652056	139652057	rs13186198	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder	29,475 European ancestry cases, 63,482 European ancestry controls	NA	5q31.3	NR	rs13186198-G	0.536186	9E-6		1.0695187	[1.04-1.1]	Affymetrix [7791636] (imputed)	N
1650	chr5	139654978	139654979	rs6879629	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Verbal-numerical reasoning	171,304 British ancestry individuals	NA	5q31.3		rs6879629-?	NR	1E-11				NR [7857346] (imputed)	N
1650	chr5	139660915	139660916	rs3777095	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Worry too long after an embarrassing experience	367,725 European ancestry individuals	NA	5q31.3	CYSTM1	rs3777095-A	0.46041	1E-8		5.68	z score decrease	NR [10847151] (imputed)	N
1650	chr5	139689453	139689454	rs67432087	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	5q31.3	NR	rs67432087-T	NR	1E-9		6.089	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1650	chr5	139692514	139692515	rs6870103	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Reaction time	330,024 British ancestry individuals	NA	5q31.3		rs6870103-?	NR	2E-9				NR [7857346] (imputed)	N
1650	chr5	139692514	139692515	rs6870103	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	5q31.3	PFDN1	rs6870103-?	NR	2E-9		0.010484	[0.0071-0.0139] unit increase	Affymetrix [805426] (imputed)	N
1650	chr5	139701919	139701920	rs739954	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	5q31.3	NR	rs739954-T	NR	6E-10		6.181	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1650	chr5	139706524	139706525	rs7719289	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mode of anisotropy)	17,706 European ancestry individuals	NA	5q31.3	NR	rs7719289-?		5E-12	(Posterior limb of internal capsule)			NR [8955960] (imputed)	N
1650	chr5	139707438	139707439	rs11168036	28183528	Jun GR	2017-02-06	Alzheimers Dement	Transethnic genome-wide scan identifies novel Alzheimer's disease loci.	Alzheimer's disease in APOE e4- carriers	4,829 European ancestry cases, 9,740 European ancestry controls, 607 African American cases, 2,270 African American controls, 416  Japanese ancestry cases, 743 Japanese ancestry controls, 51 Israeli-Arab ancestry cases, 64 Israeli-Arab ancestry controls	2,751 European ancestry cases, 11,497 European ancestry controls	5q31.3	NR	rs11168036-T	NR	1E-6		1.11	[1.06-1.15]	NR [NR]	N
1650	chr5	139707438	139707439	rs11168036	28183528	Jun GR	2017-02-06	Alzheimers Dement	Transethnic genome-wide scan identifies novel Alzheimer's disease loci.	Alzheimer's disease	13,100 European ancestry cases, 13,220 European ancestry controls, 1,472 African American cases, 3,511 African American controls, 951 Japanese ancestry cases, 894 Japanese ancestry controls, 51 Israeli-Arab ancestry cases, 64 Israeli-Arab ancestry controls	5,813 European ancestry cases, 20,474 European ancestry controls	5q31.3	NR	rs11168036-T	NR	7E-9		1.08	[1.06-1.10]	NR [NR]	N
1650	chr5	139707438	139707439	rs11168036	28183528	Jun GR	2017-02-06	Alzheimers Dement	Transethnic genome-wide scan identifies novel Alzheimer's disease loci.	Alzheimer's disease	13,100 European ancestry cases, 13,220 European ancestry controls, 1,472 African American cases, 3,511 African American controls, 951 Japanese ancestry cases, 894 Japanese ancestry controls, 51 Israeli-Arab ancestry cases, 64 Israeli-Arab ancestry controls	5,813 European ancestry cases, 20,474 European ancestry controls	5q31.3	HBEGF, PFDN1	rs11168036-T	0.5	7E-9		1.08	[1.06-1.10]	NR [NR]	N
1650	chr5	139707438	139707439	rs11168036	25778476	Jun G	2015-03-17	Mol Psychiatry	A novel Alzheimer disease locus located near the gene encoding tau protein.	Alzheimer's disease in APOE e4- carriers	7,184 cases, 26,968 controls	718 European ancestry cases, 1,699 European ancestry controls	5q31.3	PFDN1, HBEGF	rs11168036-T	0.5	3E-7		1.12	[1.07-1.17]	NR [NR]	N
1650	chr5	139707782	139707783	rs4913081	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q31.3	NR	rs4913081-?		4E-8	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
1650	chr5	139707782	139707783	rs4913081	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q31.3	NR	rs4913081-?		4E-8	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
1650	chr5	139712238	139712239	rs2282802	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	5q31.3	HBEGF	rs2282802-A	NR	5E-9		0.017656693	[0.012-0.024] unit increase	Affymetrix [NR]	N
1650	chr5	139712877	139712878	rs13385	28416822	Low SK	2017-04-17	Nat Genet	Identification of six new genetic loci associated with atrial fibrillation in the Japanese population.	Atrial fibrillation	8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls	3,120 Japanese ancestry cases, 125,064 Japanese ancestry controls, 15,993 European ancestry cases, 113,719 European ancestry controls	5q31.3	HBEGF	rs13385-A	0.375	2E-7	(Japanese)	1.094	[1.058-1.131]	Illumina [5018049] (imputed)	N
1650	chr5	139714563	139714564	rs2074613	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	5q31.3	NR	rs2074613-?	NR	6E-11				Affymetrix [~ 8270000] (imputed)	N
1650	chr5	139714563	139714564	rs2074613	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	5q31.3		rs2074613-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1650	chr5	139714563	139714564	rs2074613	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	5q31.3	HBEGF	rs2074613-T	NR	1E-8		5.734	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1650	chr5	139714563	139714564	rs2074613	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	5q31.3	HBEGF	rs2074613-T	NR	1E-8		0.016769188	[0.011-0.023] unit increase	Affymetrix [NR]	N
1650	chr5	139716987	139716988	rs2237078	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Creatine kinase levels	106,080 Japanese ancestry individuals	NA	5q31.3	HBEGF	rs2237078-?	NR	3E-9		0.02742	[0.018-0.036] unit decrease novel	Illumina [6108953] (imputed)	N
1650	chr5	139719982	139719983	rs4150222	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q31.3	NR	rs4150222-?		3E-8	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
1650	chr5	139719990	139719991	rs4150221	32358547	Persyn E	2020-05-01	Nat Commun	Genome-wide association study of MRI markers of cerebral small vessel disease in 42,310 participants.	White matter integrity (mean diffusivity)	17,467 European ancestry individuals	NA	5q31.3	HBEGF	rs4150221-C	0.263358	4E-8		0.266091	[0.17-0.36] unit decrease	Affymetrix [NR] (imputed)	N
1650	chr5	139719990	139719991	rs4150221	32358547	Persyn E	2020-05-01	Nat Commun	Genome-wide association study of MRI markers of cerebral small vessel disease in 42,310 participants.	White matter integrity (fractional anisotropy)	17,663 European ancestry individuals	NA	5q31.3	HBEGF	rs4150221-C	0.262946	1E-9		0.288292	[0.2-0.38] unit increase	Affymetrix [NR] (imputed)	N
1650	chr5	139719990	139719991	rs4150221	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q31.3	NR	rs4150221-?		5E-9	(Anterior corona radiata)			NR [8955960] (imputed)	N
1650	chr5	139719990	139719991	rs4150221	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q31.3	NR	rs4150221-?		5E-11	(Average across all tracts)			NR [8955960] (imputed)	N
1650	chr5	139719990	139719991	rs4150221	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q31.3	NR	rs4150221-?		4E-9	(Retrolenticular part of internal capsule)			NR [8955960] (imputed)	N
1650	chr5	139719990	139719991	rs4150221	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q31.3	NR	rs4150221-?		2E-8	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
1650	chr5	139719990	139719991	rs4150221	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q31.3	NR	rs4150221-?		2E-10	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
1650	chr5	139719990	139719991	rs4150221	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q31.3	NR	rs4150221-?		2E-10	(Cingulate gyrus)			NR [8955960] (imputed)	N
1650	chr5	139719990	139719991	rs4150221	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q31.3	NR	rs4150221-?		1E-8	(Body of corpus callosum)			NR [8955960] (imputed)	N
1650	chr5	139719990	139719991	rs4150221	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q31.3	NR	rs4150221-?		6E-10	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
1650	chr5	139719990	139719991	rs4150221	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q31.3	NR	rs4150221-?		4E-11	(Average across all tracts)			NR [8955960] (imputed)	N
1650	chr5	139719990	139719991	rs4150221	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q31.3	NR	rs4150221-?		3E-13	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
1650	chr5	139719990	139719991	rs4150221	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q31.3	NR	rs4150221-?		3E-10	(Anterior corona radiata)			NR [8955960] (imputed)	N
1650	chr5	139719990	139719991	rs4150221	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q31.3	NR	rs4150221-?		2E-15	(Genu of corpus callosum)			NR [8955960] (imputed)	N
1650	chr5	139719990	139719991	rs4150221	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q31.3	NR	rs4150221-?		1E-10	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
1650	chr5	139719990	139719991	rs4150221	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q31.3	NR	rs4150221-?		4E-11	(Body of corpus callosum)			NR [8955960] (imputed)	N
1650	chr5	139719990	139719991	rs4150221	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q31.3	NR	rs4150221-?		2E-10	(Average across all tracts)			NR [8955960] (imputed)	N
1650	chr5	139719990	139719991	rs4150221	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q31.3	NR	rs4150221-?		1E-9	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
1650	chr5	139719990	139719991	rs4150221	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	5q31.3	NR	rs4150221-?		5E-8	(Anterior corona radiata)			NR [8955960] (imputed)	N
1650	chr5	139719990	139719991	rs4150221	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	5q31.3	NR	rs4150221-?		3E-8	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
1650	chr5	139721457	139721458	rs4150214	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q31.3	NR	rs4150214-?		2E-8	(Cingulate gyrus)			NR [8955960] (imputed)	N
1650	chr5	139721912	139721913	rs4150210	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q31.3	NR	rs4150210-?		4E-9	(Posterior limb of internal capsule)			NR [8955960] (imputed)	N
1650	chr5	139722344	139722345	rs2074611	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q31.3	NR	rs2074611-?		1E-9	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
1650	chr5	139722344	139722345	rs2074611	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q31.3	NR	rs2074611-?		2E-9	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
1651	chr5	139726291	139726292	rs4150197	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q31.3	NR	rs4150197-?		4E-17	(Genu of corpus callosum)			NR [8955960] (imputed)	N
1651	chr5	139726291	139726292	rs4150197	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q31.3	NR	rs4150197-?		7E-16	(Genu of corpus callosum)			NR [8955960] (imputed)	N
1651	chr5	139726640	139726641	rs4150196	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q31.3	NR	rs4150196-?		4E-8	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
1651	chr5	139726640	139726641	rs4150196	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	5q31.3	NR	rs4150196-T	NR	3E-8		5.555	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1651	chr5	139727259	139727260	rs3776089	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q31.3	NR	rs3776089-?		2E-27	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
1651	chr5	139727259	139727260	rs3776089	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q31.3	NR	rs3776089-?		2E-12	(Posterior limb of internal capsule)			NR [8955960] (imputed)	N
1651	chr5	139727259	139727260	rs3776089	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q31.3	NR	rs3776089-?		9E-9	(Posterior limb of internal capsule)			NR [8955960] (imputed)	N
1651	chr5	139727259	139727260	rs3776089	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q31.3	NR	rs3776089-?		4E-31	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
1651	chr5	139727259	139727260	rs3776089	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q31.3	NR	rs3776089-?		3E-8	(Retrolenticular part of internal capsule)			NR [8955960] (imputed)	N
1651	chr5	139767962	139767963	rs116578164	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q31.3	NR	rs116578164-?		6E-15	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
1651	chr5	139767962	139767963	rs116578164	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q31.3	NR	rs116578164-?		9E-18	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
1651	chr5	139768708	139768716	rs543948889	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q31.3	NR	rs543948889-?		3E-8	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
1651	chr5	139768708	139768716	rs543948889	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q31.3	NR	rs543948889-?		8E-9	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
1651	chr5	139775838	139775839	rs6872579	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q31.3	NR	rs6872579-?		9E-10	(Genu of corpus callosum)			NR [8955960] (imputed)	N
1651	chr5	139775838	139775839	rs6872579	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q31.3	NR	rs6872579-?		1E-9	(Genu of corpus callosum)			NR [8955960] (imputed)	N
1651	chr5	139775838	139775839	rs6872579	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q31.3	NR	rs6872579-?		4E-8	(Genu of corpus callosum)			NR [8955960] (imputed)	N
1651	chr5	139784552	139784560	rs149708665	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q31.3	NR	rs149708665-?		4E-11	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
1651	chr5	139784552	139784560	rs149708665	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q31.3	NR	rs149708665-?		5E-12	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
1651	chr5	139798006	139798007	rs111998037	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	5q31.3	PFDN1, HBEGF, SLC4A9, ANKHD1, ANKHD1-EIF4EBP3	rs111998037-C	0.248	9E-6		1.0592884		NR [9372253] (imputed)	N
1651	chr5	139798006	139798007	rs111998037	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar I disorder	14,879 European ancestry cases, 31,358 European ancestry controls	NA	5q31.3	PFDN1, HBEGF, SLC4A9, ANKHD1, ANKHD1-EIF4EBP3	rs111998037-C	0.248	8E-7		1.0910003	[NR]	NR [9372253] (imputed)	N
1652	chr5	139878022	139878023	rs11746609	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5q31.3	EIF4EBP3	rs11746609-?	NR	8E-6	(methionine)	0.7340689	[0.41-1.06] unit increase	Affymetrix [at least 2500000] (imputed)	N
1652	chr5	139894563	139894563	rs11377029	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q31.3	NR	rs11377029-?		3E-17	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
1652	chr5	139894563	139894563	rs11377029	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q31.3	NR	rs11377029-?		3E-10	(Genu of corpus callosum)			NR [8955960] (imputed)	N
1652	chr5	139894563	139894563	rs11377029	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q31.3	NR	rs11377029-?		3E-8	(Genu of corpus callosum)			NR [8955960] (imputed)	N
1652	chr5	139894563	139894563	rs11377029	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q31.3	NR	rs11377029-?		4E-8	(Average across all tracts)			NR [8955960] (imputed)	N
1652	chr5	139894563	139894563	rs11377029	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q31.3	NR	rs11377029-?		3E-8	(Body of corpus callosum)			NR [8955960] (imputed)	N
1652	chr5	139894563	139894563	rs11377029	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q31.3	NR	rs11377029-?		3E-19	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
1652	chr5	139894563	139894563	rs11377029	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q31.3	NR	rs11377029-?		2E-10	(Genu of corpus callosum)			NR [8955960] (imputed)	N
1652	chr5	139922278	139922279	rs5871739	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q31.3	NR	rs5871739-?		5E-10	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
1652	chr5	139922278	139922279	rs5871739	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q31.3	NR	rs5871739-?		5E-11	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
1652	chr5	139978240	139978241	rs58027502	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD14 on CD14+ CD16- monocyte	3,629 Sardinian (founder/genetic isolate) ancestry individuals	NA	5q31.3		rs58027502-T	0.13753	2E-13		0.2591	[0.19-0.33] unit decrease	Illumina [18218967] (imputed)	N
1653	chr5	139985717	139985717	rs144844453	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q31.3	NR	rs144844453-?		6E-11	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
1653	chr5	139985717	139985717	rs144844453	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q31.3	NR	rs144844453-?		6E-11	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
1653	chr5	139992112	139992113	rs57599368	33910371	Stanislawski MA	2021-04-29	Arterioscler Thromb Vasc Biol	Soluble CD14 Levels in the Jackson Heart Study: Associations With Cardiovascular Disease Risk and Genetic Variants.	Soluble CD14 levels	3,349 Black individuals	NA	5q31.3		rs57599368-?	0.11	9E-12	(conditioned)	0.24	[0.16-0.32] unit decrease	NR [31143179]	N
1653	chr5	139992161	139992162	rs2569177	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD14 on CD14+ CD16+ monocyte	3,618 Sardinian (founder/genetic isolate) ancestry individuals	NA	5q31.3		rs2569177-T	0.30576	7E-10		0.1645	[0.11-0.22] unit increase	Illumina [18213821] (imputed)	N
1653	chr5	139998806	139998807	rs778603	34006833	Elvsashagen T	2021-05-18	Nat Commun	The genetic architecture of the human thalamus and its overlap with ten common brain disorders.	Intralaminar thalamic nuclei volume	30,114 white British ancestry individuals			RP11-515C16.1	rs778603-A	0.4829	1E-9		0.0499742	[0.034-0.066] unit decrease	Affymetrix [8165723] (imputed)	N
1653	chr5	140000427	140000428	rs778601	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5q31.3		rs778601-?	NR	3E-13				NR [~ 8900000] (imputed)	N
1653	chr5	140001760	140001761	rs778599	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	5q31.3		rs778599-A	NR	3E-9		0.0132	[0.0089-0.0175] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
1653	chr5	140003958	140003962	rs143189023	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q31.3	NR	rs143189023-?		9E-9	(Anterior corona radiata)			NR [8955960] (imputed)	N
1653	chr5	140004815	140004816	rs778582	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	PDL-1 on CD14+ CD16- monocyte	3,629 Sardinian (founder/genetic isolate) ancestry individuals	NA	5q31.3		rs778582-T	0.30635	3E-8		0.1479	[0.096-0.2] unit increase	Illumina [18218967] (imputed)	N
1653	chr5	140004908	140004909	rs72800905	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q31.3	NR	rs72800905-G	0.226291	6E-13				Affymetrix, Illumina [23467995] (imputed)	N
1653	chr5	140005109	140005110	rs778583	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q31.3	NR	rs778583-?		3E-8	(Body of corpus callosum)			NR [8955960] (imputed)	N
1653	chr5	140005927	140005928	rs57501596	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q31.3	NR	rs57501596-?		2E-8	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
1653	chr5	140006266	140006267	rs60745418	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CD14	5,334 Icelandic ancestry individuals	NA	5q31.3		rs60745418-T	0.2969	6E-20		0.159759	[0.13-0.19] unit decrease	Illumina [7506463] (imputed)	N
1653	chr5	140007610	140007610	rs143010088	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q31.3	NR	rs143010088-?		3E-10	(Average across all tracts)			NR [8955960] (imputed)	N
1653	chr5	140007610	140007610	rs143010088	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q31.3	NR	rs143010088-?		8E-10	(Average across all tracts)			NR [8955960] (imputed)	N
1653	chr5	140007610	140007610	rs143010088	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q31.3	NR	rs143010088-?		5E-10	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
1653	chr5	140007610	140007610	rs143010088	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q31.3	NR	rs143010088-?		2E-10	(Average across all tracts)			NR [8955960] (imputed)	N
1653	chr5	140007629	140007630	rs112800995	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	5q31.3	NR	rs112800995-A	0.228019	2E-13		0.016898	[0.012-0.021] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
1653	chr5	140010268	140010269	rs11574651	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5q31.3	TMCO6	rs11574651-?	NR	9E-6	(methionine)	2.1571739	[1.21-3.11] unit increase	Affymetrix [at least 2500000] (imputed)	N
1653	chr5	140011814	140011815	rs770147646	33910371	Stanislawski MA	2021-04-29	Arterioscler Thromb Vasc Biol	Soluble CD14 Levels in the Jackson Heart Study: Associations With Cardiovascular Disease Risk and Genetic Variants.	Soluble CD14 levels	3,349 Black individuals	NA	5q31.3		rs770147646-?	0.0013	2E-17	(conditioned)	2.56	[1.97-3.15] unit decrease	NR [31143179]	N
1653	chr5	140013430	140013431	rs75652866	33910371	Stanislawski MA	2021-04-29	Arterioscler Thromb Vasc Biol	Soluble CD14 Levels in the Jackson Heart Study: Associations With Cardiovascular Disease Risk and Genetic Variants.	Soluble CD14 levels	3,349 Black individuals	NA	5q31.3		rs75652866-?	0.091	7E-124		0.99	[0.91-1.07] unit decrease	NR [31143179]	N
1653	chr5	140013902	140013903	rs2569191	32066700	Zhang R	2020-02-05	Transl Psychiatry	Genome-wide study of immune biomarkers in cerebrospinal fluid and serum from patients with bipolar disorder and controls.	Serum immune biomarker levels	184 Scandinavian ancestry bipolar disorder cases, 107 Scandinavian ancestry controls	NA	5q31.3	ZMAT2, WDR55, TMCO6, SRA1, SLC35A4, PCDHA2, PCDHA3, PCDHA1, NDUFA2, IK, HARS, HARS2, EIF4EBP3, DND1, CD14, APBB3, ANKHD1, ANKHD1-EIF4EBP3	rs2569191-T	0.579	7E-9	(sCD14)	125.703	NR unit decrease	Affymetrix, Illumina [> 5000000] (imputed)	N
1653	chr5	140017460	140017460	rs111503800	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q31.3	NR	rs111503800-?		4E-11	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
1653	chr5	140017460	140017460	rs111503800	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q31.3	NR	rs111503800-?		3E-13	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
1653	chr5	140019920	140019921	rs12517200	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q31.3	NR	rs12517200-?		3E-8	(Anterior corona radiata)			NR [8955960] (imputed)	N
1653	chr5	140019920	140019921	rs12517200	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q31.3	NR	rs12517200-?		3E-14	(Genu of corpus callosum)			NR [8955960] (imputed)	N
1653	chr5	140019920	140019921	rs12517200	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q31.3	NR	rs12517200-?		2E-20	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
1653	chr5	140019920	140019921	rs12517200	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	5q31.3	NR	rs12517200-?		2E-11	(Genu of corpus callosum)			NR [8955960] (imputed)	N
1653	chr5	140019920	140019921	rs12517200	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q31.3	NR	rs12517200-?		9E-11	(Body of corpus callosum)			NR [8955960] (imputed)	N
1653	chr5	140019920	140019921	rs12517200	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q31.3	NR	rs12517200-?		7E-21	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
1653	chr5	140019920	140019921	rs12517200	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q31.3	NR	rs12517200-?		3E-14	(Genu of corpus callosum)			NR [8955960] (imputed)	N
1653	chr5	140023237	140023238	rs17208187	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	5q31.3	CD14	rs17208187-C	0.69328125	4E-12	(CD14, 8969_49_3)	0.18164536	[0.13-0.23] unit increase	Illumina [> 1000000] (imputed)	N
1653	chr5	140025483	140025484	rs778591	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	5q31.3	NR	rs778591-A	NR	2E-10		6.355	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1653	chr5	140025753	140025754	rs2563332	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income	286,301 British ancestry individuals	NA	5q31.3	NDUFA2	rs2563332-T	NR	1E-8		0.011564	[0.0076-0.0155] unit decrease	Affymetrix [18485882] (imputed)	N
1653	chr5	140025753	140025754	rs2563332	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q31.3	NR	rs2563332-?		2E-10	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
1653	chr5	140025753	140025754	rs2563332	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q31.3	NR	rs2563332-?		2E-10	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
1653	chr5	140027215	140027216	rs778593	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	5q31.3		rs778593-?	NR	9E-14				NR [~ 8900000] (imputed)	N
1653	chr5	140030740	140030741	rs56692296	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	5q31.3	IK	rs56692296-A	0.212598	1E-10		0.01742653	[0.012-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1653	chr5	140046169	140046170	rs144032011	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Aspartate aminotransferase levels in low alcohol consumption	8,716 individuals	NA	5q31.3	NR	rs144032011-?	NR	2E-6		0.1577	[0.093-0.222] unit increase	Illumina [~ 7800000] (imputed)	N
1653	chr5	140048706	140048707	rs35983033	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q31.3	NR	rs35983033-?		4E-12	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
1653	chr5	140051982	140051983	rs2530243	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	5q31.3	NR	rs2530243-?	NR	2E-6		4.736	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1653	chr5	140054484	140054485	rs2530241	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	5q31.3	NR	rs2530241-C	0.425447	1E-8		0.03613228	[0.024-0.049] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1653	chr5	140054484	140054485	rs2530241	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	5q31.3	Intergenic	rs2530241-T	0.4342	2E-8	(MTAG)	0.0129	[0.0084-0.0174] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1653	chr5	140054484	140054485	rs2530241	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	5q31.3	Intergenic	rs2530241-T	0.4342	1E-8		0.0165	[0.011-0.022] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
1653	chr5	140075473	140075474	rs17119056	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	5q31.3	HARS2	rs17119056-T	0.093	2E-8		5.58	z-score increase	Affymetrix [4314223] (imputed)	N
1653	chr5	140086676	140086677	rs702395	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	5q31.3	ZMAT2	rs702395-T	0.4381	8E-15		0.191	[0.14-0.24] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1653	chr5	140102538	140102539	rs2530225	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	5q31.3	VTRNA1-3	rs2530225-A	0.4934	3E-9		0.1156	[0.077-0.154] mmHg increase	Affymetrix [NR] (imputed)	N
1653	chr5	140107230	140107231	rs6875495	34002096	Mullins N	2021-05-17	Nat Genet	Genome-wide association study of more than 40,000 bipolar disorder cases provides new insights into the underlying biology.	Bipolar I disorder	25,060 European ancestry cases, 449,978 European ancestry controls	NA	5q31.3	NR	rs6875495-C	0.718	1E-8		0.92617	[0.9-0.95]	Affymetrix, Illumina [7549318] (imputed)	N
1653	chr5	140109022	140109026	rs1307313562	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q31.3	NR	rs1307313562-G	0.0122	3E-8	(PRDX4)	0.1827	NR unit increase	Illumina [1671387] (imputed)	N
1653	chr5	140115302	140115303	rs801171	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	5q31.3		rs801171-A	NR	9E-9		0.0095	[0.0064-0.0126] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1653	chr5	140115302	140115303	rs801171	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	5q31.3		rs801171-A	0.4473	1E-15		0.17506155	[0.13-0.22] mmHg increase	Affymetrix, Illumina [242865] (imputed)	N
1653	chr5	140115302	140115303	rs801171	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	5q31.3		rs801171-A	0.4475	6E-16		0.12452521	[0.094-0.156] mmHg increase	Affymetrix, Illumina [242866] (imputed)	N
1653	chr5	140115342	140115343	rs801170	33766948	Zhu Z	2021-03-25	Eur Respir J	A large-scale genome-wide association analysis of lung function in the Chinese population identifies novel loci and highlights shared genetic etiology with obesity.	Lung function (FVC) and body mass index	up to 100,285 Chinese ancestry individuals	up to 457,756 European ancestry individuals	5q31.3		rs801170-C	NR	9E-13	(East Asian)			Affymetrix [NR] (imputed)	N
1653	chr5	140115342	140115343	rs801170	33766948	Zhu Z	2021-03-25	Eur Respir J	A large-scale genome-wide association analysis of lung function in the Chinese population identifies novel loci and highlights shared genetic etiology with obesity.	Lung function (FEV1) and body mass index	up to 100,285 Chinese ancestry individuals	up to 457,756 European ancestry individuals	5q31.3		rs801170-C	NR	9E-13	(East Asian)			Affymetrix [NR] (imputed)	N
1654	chr5	140116663	140116664	rs2531360	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	5q31.3	ENSG00000250515	rs2531360-?	NR	2E-10		0.0126121985	[0.0087-0.0165] unit decrease	NR [7306098]	N
1654	chr5	140117889	140117890	rs17208215	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	5q31.3	NR	rs17208215-T	NR	4E-8		5.502	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1654	chr5	140124544	140124544	rs79094127	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q31.3	NR	rs79094127-?		5E-9	(Genu of corpus callosum)			NR [8955960] (imputed)	N
1654	chr5	140124544	140124544	rs79094127	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	5q31.3	NR	rs79094127-?		3E-11	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
1654	chr5	140124544	140124544	rs79094127	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	5q31.3	NR	rs79094127-?		8E-9	(Genu of corpus callosum)			NR [8955960] (imputed)	N
1654	chr5	140138700	140138701	rs7445192	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	5q31.3	LOC10042107	rs7445192-G	NR	5E-7	(EA)	1.0559661	[1.03-1.08]	Illumina [6627481] (imputed)	N
1654	chr5	140146898	140146899	rs13168670	31268507	Periyasamy S	2019-07-03	JAMA Psychiatry	Association of Schizophrenia Risk With Disordered Niacin Metabolism in an Indian Genome-wide Association Study.	Schizophrenia	816 Indian ancestry cases, 900 Indian ancestry controls, 505 Indian ancestry cases and 871 Indian ancestry controls from 405 families, up to 36,989 European and unknown ancestry cases, up to 113,075 European and unknown ancestry controls	NA	5q31.3	NR	rs13168670-?	NR	6E-8				Illumina [up to 5582932] (imputed)	N
1654	chr5	140146898	140146899	rs13168670	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	5q31.3	NR	rs13168670-T	NR	4E-7		1.05	[NR]	Illumina [7158791] (imputed)	N
1654	chr5	140154214	140154215	rs7733403	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	5q31.3	NR	rs7733403-?	NR	9E-11		1.05622	[1.04-1.07]	Affymetrix, Illumina [12447948] (imputed)	N
1654	chr5	140154214	140154215	rs7733403	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	5q31.3	LOC10042107	rs7733403-A	NR	1E-8		1.055	[1.04-1.07]	Illumina [6627481] (imputed)	N
1654	chr5	140154214	140154215	rs7733403	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	5q31.3	NDUFA2, PCDHA1, PCDHA10, PCDHA13, PCDHA2, PCDHA3, PCDHA4, PCDHA5, PCDHA7, PCDHA8, PCDHAC2, PCDHB3, SRA1, TMCO6, WDR55, ZMAT2	rs7733403-A	NR	2E-8		1.052	[1.03-1.07]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1654	chr5	140155905	140155906	rs70988775	29483656	Pardinas AF	2018-02-26	Nat Genet	Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.	Schizophrenia	40,675 European ancestry cases, 64,643 European ancestry controls	1,651 European ancestry cases, 4,111 cases, 142,717 European ancestry controls, 11,507 controls	5q31.3	AC005609.1, CD14, DND1, HARS, HARS2, IK, NDUFA2, PCDHA1, PCDHA10, PCDHA2, PCDHA3, PCDHA4, PCDHA5, PCDHA6, PCDHA7, PCDHA8, PCDHA9, TMCO6, WDR55, ZMAT2	rs70988775-?	NR	8E-7				Illumina [8000000] (imputed)	N
1654	chr5	140191242	140191243	rs9716546	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms (MTAG)	955,012 individuals	NA	5q31.3	NR	rs9716546-?		1E-8				NR [520857]	N
1654	chr5	140206743	140206744	rs13181143	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	5q31.3	NR	rs13181143-?	NR	8E-6		4.457	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1654	chr5	140212537	140212538	rs3806843	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms	688,809 individuals	NA	5q31.3	NR	rs3806843-?		1E-9				NR [11140414]	N
1654	chr5	140212537	140212538	rs3806843	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depression	688,809 European ancestry individuals	NA	5q31.3	NR	rs3806843-T	NR	1E-9		6.049	z score decrease	Affymetrix [10847151] (imputed)	N
1654	chr5	140212537	140212538	rs3806843	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms (MTAG)	354,862 European ancestry individuals	NA	5q31.3	NR	rs3806843-C	0.5481	1E-8		0.0125	[0.0082-0.0168] unit increase	Illumina [NR] (imputed)	N
1654	chr5	140212537	140212538	rs3806843	27479909	Hyde CL	2016-08-01	Nat Genet	Identification of 15 genetic loci associated with risk of major depression in individuals of European descent.	Major depressive disorder	84,847 European ancestry cases, 241,266 European ancestry controls	45,773 European ancestry cases, 106,354 European ancestry controls	5q31.3	ZMAT2, AX746964	rs3806843-T	0.448516	9E-8		0.0291	[0.017-0.041] unit decrease	Illumina [1220000] (imputed)	N
1654	chr5	140213509	140213510	rs3756335	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	5q31.3		rs3756335-?	NR	9E-25		0.0281	unit decrease	NR [NR]	N
1655	chr5	140284215	140284216	rs150616068	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	5q31.3	PCDHA1, PCDHA5, PCDHA2, PCDHA4, PCDHA10, PCDHA8, PCDHA6, PCDHA11, PCDHA12, PCDHA13, PCDHA3, PCDHA7, PCDHA9	rs150616068-A	0.0462	4E-9		0.05279411	[0.035-0.07] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1655	chr5	140284215	140284216	rs150616068	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	5q31.3	PCDHA1, PCDHA5, PCDHA2, PCDHA4, PCDHA10, PCDHA8, PCDHA6, PCDHA11, PCDHA12, PCDHA13, PCDHA3, PCDHA7, PCDHA9	rs150616068-A	0.0462	4E-9		0.05288415	[0.035-0.07] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1655	chr5	140307968	140307969	rs246074	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	5q31.3		rs246074-G	0.514	1E-11		0.1592518	[0.11-0.21] mmHg decrease	Affymetrix, Illumina [242865] (imputed)	N
1655	chr5	140307968	140307969	rs246074	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	5q31.3		rs246074-G	0.5139	2E-12		0.11496815	[0.082-0.148] mmHg decrease	Affymetrix, Illumina [242866] (imputed)	N
1655	chr5	140317370	140317371	rs246073	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	5q31.3	CXXC5, SRA1, CD14, ZMAT2, PCDHA1, PCDHB1, PCDHB2, PCDHB3, PCDHB4, PCDHB5, PCDHB6, PCDHB17, PCDHB7, PCDHB16, PCDHB8, PCDHB9, PCDHB11, PCDHB12, PCDHB18, PCDHB15, SLC25A2, TAF7, PCDHGA1, DIAPH1, HDAC3, RELL2, FCHSD1	rs246073-?		2E-14				Affymetrix, Illumina [NR] (imputed)	N
1655	chr5	140317402	140317403	rs190175998	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	5q31.3		rs190175998-?	NR	7E-10				NR [~ 8900000] (imputed)	N
1655	chr5	140372221	140372222	rs31872	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue adjusted for BMI	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	5q31.3	PCDHAC1	rs31872-G	0.39	3E-6	(men)			Affymetrix, Illumina [2500000] (imputed)	N
1657	chr5	140519165	140519166	rs246723	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	5q31.3		rs246723-?	NR	6E-14				NR [~ 8900000] (imputed)	N
1657	chr5	140564262	140564263	rs17844666	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	5q31.3	PCDHB16	rs17844666-?	NR	5E-10		0.017934434	[0.012-0.024] unit increase	Illumina [27896057] (imputed)	N
1657	chr5	140595904	140595905	rs114032728	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q31.3	NR	rs114032728-A	0.01568	4E-11	(CCDC58)	0.01644	NR unit decrease	Illumina [1671387] (imputed)	N
1658	chr5	140682890	140682891	rs3749779	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	5q31.3	SLC25A2	rs3749779-C	0.165	7E-6	(Vitamin B12 )	0.02	[NR] pmol/L increase	Illumina [899892]	N
1658	chr5	140694837	140694841	rs199635961	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 4 levels	252 European ancestry individuals	NA	5q31.3		rs199635961-G	NR	4E-7		3.6054	[2.24-4.97] unit increase	Illumina [NR] (imputed)	N
1658	chr5	140700488	140700489	rs10875595	22424883	Imboden M	2012-03-15	J Allergy Clin Immunol	Genome-wide association study of lung function decline in adults with and without asthma.	Pulmonary function decline	1,441 European ancestry asthma cases, 2,677 European ancestry controls	1,160 European ancestry asthma cases, 10,858 European ancestry controls	5q31.3	intergenic	rs10875595-?	NR	1E-6	(FEV1/FVC decline in asthmatics)	0.2523	[0.15-0.35] unit decrease	Illumina [~ 2500000] (imputed)	N
1658	chr5	140702059	140702060	rs563151485	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	5q31.3	AC005618.6, TAF7, AC005618.1	rs563151485-T	0.006884	2E-15		0.11601928	[0.088-0.145] unit increase	Affymetrix [93095623] (imputed)	N
1658	chr5	140702059	140702060	rs563151485	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	5q31.3	AC005618.6, TAF7, AC005618.1	rs563151485-T	0.0075	2E-10		0.1492659	[0.1-0.2] unit increase	Affymetrix [~ 2500000] (imputed)	N
1658	chr5	140710704	140710705	rs2472647	26343869	Xie G	2015-09-05	Atherosclerosis	Genome-wide association study on progression of carotid artery intima media thickness over 10 years in a Chinese cohort.	Carotid intima media thickness	810 Chinese ancestry individuals	NA	5q31.3	PCDHGA1	rs2472647-?	NR	8E-6	(Multiple-adjusted)			Illumina [32817]	N
1659	chr5	140796098	140796099	rs3806830	30120420	Sun R	2018-08-17	Mol Psychiatry	Identification of novel loci associated with infant cognitive ability.	Mental composite score	502 Bangladeshi ancestry infants, 462 Hispanic or Latin American infants	NA	5q31.3	NR	rs3806830-?	NR	4E-6		4.5	[2.58-6.41] unit increase	Illumina [552487]	N
1659	chr5	140869002	140869003	rs1002519	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	5q31.3	NR	rs1002519-T	0.229622	4E-10		0.052421402	[0.036-0.069] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1659	chr5	140876455	140876455	rs113780350	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	5q31.3		rs113780350-TA	NR	4E-9		0.0166	[0.011-0.022] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
1659	chr5	140879680	140879681	rs72790070	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	5q31.3	PCDHGA9, PCDHGA8, PCDHGB7, PCDHGC5, PCDHGA10, PCDHGA11, PCDHGA12, PCDHGB3, PCDHGB2, PCDHGB1, PCDHGC3, PCDHGC4, PCDHGB6, PCDHGB4, PCDHGA2, PCDHGA3, PCDHGA1, PCDHGA6, PCDHGA7, PCDHGA4, PCDHGA5	rs72790070-A	0.031776	5E-22		0.06204156	[0.049-0.075] unit increase	Affymetrix [93095623] (imputed)	N
1659	chr5	140879680	140879681	rs72790070	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	5q31.3	NR	rs72790070-G	0.968206	4E-31		0.063642	[0.053-0.074] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
1659	chr5	140888652	140888653	rs147084289	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Alcohol consumption x traumatic event in childhood (felt hated by family member) interaction	46,394 European ancestry individuals	NA	5q31.3		rs147084289-?	NR	1E-9		2.8942	[1.96-3.83] unit increase	Affymetrix [NR] (imputed)	N
1660	chr5	140914635	140914636	rs72790085	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q31.3	NR	rs72790085-G	0.967576	2E-27				Affymetrix, Illumina [17210439] (imputed)	N
1660	chr5	140917633	140917633	rs34100728	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	5q31.3		rs34100728-GT	NR	5E-8		0.0129	[0.0082-0.0176] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
1660	chr5	140917787	140917788	rs7712601	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	5q31.3		rs7712601-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1660	chr5	140925361	140925362	rs740474	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	5q31.3		rs740474-T	NR	1E-15		0.0105	[0.008-0.013] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1660	chr5	140925361	140925362	rs740474	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	5q31.3	DIAPH1	rs740474-C	0.42	6E-11		1.034	[1.02-1.04]	Affymetrix, Illumina [8307659] (imputed)	N
1660	chr5	140933791	140933792	rs112424890	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	5q31.3		rs112424890-T	NR	1E-9		0.0175	[0.012-0.023] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
1660	chr5	140933791	140933792	rs112424890	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	5q31.3	DIAPH1	rs112424890-C	0.822171	4E-11		0.0172658	[0.012-0.022] unit decrease	Affymetrix [NR] (imputed)	N
1660	chr5	140934081	140934084	rs143296685	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	5q31.3	DIAPH1	rs143296685-C	0.212512	6E-10		0.017006777	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1660	chr5	140946354	140946355	rs6881581	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	5q31.3		rs6881581-A	0.3278	1E-10		0.0096	[0.0067-0.0125] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1660	chr5	140960940	140960941	rs76284251	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	154,355 East Asian ancestry individuals	NA	5q31.3		rs76284251-C	0.228613	1E-8		0.0239657	[0.016-0.032] unit decrease	Illumina [13479091] (imputed)	N
1660	chr5	140972116	140972117	rs4912763	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	5q31.3	Intergenic	rs4912763-T	0.2408	2E-8	(MTAG)	0.0117	[0.0076-0.0158] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1660	chr5	140974478	140974479	rs10066420	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	5q31.3	Intergenic	rs10066420-A	0.332	1E-10	(MTAG)	0.009	[0.0063-0.0117] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1660	chr5	140984460	140984461	rs72792324	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	5q31.3	DIAPH1	rs72792324-A	0.032	4E-10		0.06435557	[0.044-0.085] unit increase	Affymetrix [~ 2500000] (imputed)	N
1660	chr5	140989409	140989410	rs11167753	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first birth	542,901 European ancestry individuals	NA	5q31.3	DIAPH1	rs11167753-T	0.7113	1E-8		0.0574	[0.038-0.077] unit increase	NR [9744772] (imputed)	N
1660	chr5	140989847	140989848	rs9324854	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	5q31.3		rs9324854-G	NR	9E-9		0.0119	[0.0078-0.016] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
1660	chr5	140990107	140990108	rs10063055	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	5q31.3	NR	rs10063055-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
1660	chr5	140990107	140990108	rs10063055	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	5q31.3		rs10063055-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1660	chr5	140997958	140997959	rs115923254	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		DIAPH1	rs115923254-?	NR	9E-9		1.51497	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1661	chr5	141034122	141034123	rs6580194	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	5q31.3		rs6580194-A	0.378366	2E-9		0.0125277	[0.0085-0.0166] unit decrease	Illumina [13479295] (imputed)	N
1661	chr5	141035173	141035174	rs79464052	25261932	Cerhan JR	2014-09-28	Nat Genet	Genome-wide association study identifies multiple susceptibility loci for diffuse large B cell lymphoma.	Diffuse large B cell lymphoma	3,857 European ancestry cases, 7,666 European ancestry controls	1,359 European ancestry cases, 4,557 European ancestry controls	5q31.3	ARAP3	rs79464052-C	0.056	6E-8		1.34	[1.21-1.49]	Illumina [8363971] (imputed)	N
1661	chr5	141037682	141037683	rs77922030	32682390	Wang W	2020-07-18	BMC Genomics	Heritability and genome-wide association analyses of fasting plasma glucose in Chinese adult twins.	Fasting plasma glucose	382 Chinese ancestry twin pairs	NA	5q31.3	ARAP3	rs77922030-?		2E-6				NR [7405822] (imputed)	N
1661	chr5	141041434	141041435	rs3749759	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5q31.3		rs3749759-?	NR	3E-11				NR [~ 8900000] (imputed)	N
1661	chr5	141046477	141046478	rs7720942	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	5q31.3	ARAP3	rs7720942-T	0.15737424543663	2E-6	(G_Blautia_RNT)	0.138087	[0.081-0.195] unit increase	Illumina [7711310] (imputed)	N
1661	chr5	141058486	141058487	rs11957761	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	5q31.3	ARAP3	rs11957761-G	0.802939	2E-8		0.021962	[0.014-0.03] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
1661	chr5	141059569	141059570	rs139433211	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Mean arterial pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	NA	5q31.3	ARAP3	rs139433211-T	0.0018142733453997	7E-6		2.5257401	[1.42-3.63] unit increase	Illumina [247039]	N
1661	chr5	141064325	141064326	rs349131	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	5q31.3		rs349131-?	NR	8E-9				Affymetrix [NR] (imputed)	N
1661	chr5	141065076	141065077	rs248604	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	5q31.3		rs248604-?	NR	7E-9				Affymetrix [NR] (imputed)	N
1661	chr5	141077991	141077992	rs17097461	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	5q31.3	Intergenic	rs17097461-T	0.9254	6E-11	(MTAG)	0.0223	[0.016-0.029] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1661	chr5	141077991	141077992	rs17097461	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	5q31.3	Intergenic	rs17097461-T	0.9254	2E-8		0.0208	[0.014-0.028] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1661	chr5	141077991	141077992	rs17097461	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	5q31.3	Intergenic	rs17097461-T	0.9254	5E-13	(MTAG)	0.0227	[0.017-0.029] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1661	chr5	141077991	141077992	rs17097461	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	5q31.3	Intergenic	rs17097461-T	0.9224	6E-12	(MTAG)	0.017	[0.012-0.022] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1661	chr5	141082014	141082015	rs62379379	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	5q31.3	NR	rs62379379-?		8E-10		0.0260246	[0.018-0.034] unit decrease	Affymetrix [19400418] (imputed)	N
1661	chr5	141082014	141082015	rs62379379	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	5q31.3	Intergenic	rs62379379-T	0.0719	2E-9	(MTAG)	0.0267	[0.018-0.035] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1661	chr5	141132285	141132286	rs32940	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income	286,301 British ancestry individuals	NA	5q31.3	ARAP3	rs32940-C	NR	4E-8		0.011072	[0.0071-0.015] unit increase	Affymetrix [18485882] (imputed)	N
1661	chr5	141132285	141132286	rs32940	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	5q31.3		rs32940-T	0.3001	4E-10		0.0096	[0.0067-0.0125] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1662	chr5	141166694	141166695	rs248491	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5q31.3	CENTD3	rs248491-?	NR	4E-6	(beta aminoisobutyric acid)	0.31497708	[0.18-0.45] unit increase	Affymetrix [at least 2500000] (imputed)	N
1662	chr5	141185603	141185604	rs17097649	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	5q31.3	NR	rs17097649-?	NR	8E-6		19.527	NR unit increase	Affymetrix [at least 600000] (imputed)	N
1662	chr5	141188632	141188633	rs17097676	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	5q31.3	NR	rs17097676-?	NR	8E-6		19.527	NR unit increase	Affymetrix [at least 600000] (imputed)	N
1662	chr5	141189167	141189168	rs248471	23406873	Shi Y	2013-02-28	Hum Mol Genet	A genome-wide meta-analysis identifies two novel loci associated with high myopia in the Han Chinese population.	Myopia (pathological)	665 Han Chinese ancestry cases, 960 Han Chinese ancestry controls	2,128 Han Chinese ancestry cases, 3,683 Han Chinese ancestry controls	5q31.3	PCDH1	rs248471-G	0.277	2E-6		1.19	[1.11-1.28]	Illumina [286031]	N
1662	chr5	141195545	141195546	rs34357052	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	5q31.3	ARAP3, PCDH1	rs34357052-C	0.292529432	3E-6		1.0624987	[1.035812746-1.089872056]	Illumina [10439017] (imputed)	N
1662	chr5	141210752	141210753	rs166040	23377640	GENDEP Investigators	2013-02-01	Am J Psychiatry	Common genetic variation and antidepressant efficacy in major depressive disorder: a meta-analysis of three genome-wide pharmacogenetic studies.	Major depressive disorder	Up to 2,256 European ancestry cases	NA	5q31.3	PCDH1	rs166040-G	0.87	5E-6	(partial response - 2 weeks)	1.6054	[1.41-1.8]	Affymetrix, Illumina [1200000] (imputed)	N
1662	chr5	141225445	141225446	rs57450513	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cerebral amyloid deposition (PET imaging)	up to 883 European and other ancestry individuals	NA	5q31.3	ARAP3, PCDH1	rs57450513-C	0.01	2E-7	(correcting APOE e4)	0.2192	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
1662	chr5	141225445	141225446	rs57450513	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cerebral amyloid deposition (PET imaging)	up to 883 European and other ancestry individuals	NA	5q31.3	ARAP3, PCDH1	rs57450513-C	0.01	1E-6		0.2208	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
1662	chr5	141231992	141231993	rs3935792	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	5q31.3	Intergenic	rs3935792-C	0.5189	2E-8	(MTAG)	0.01	[0.0065-0.0135] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1662	chr5	141231992	141231993	rs3935792	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	5q31.3	Intergenic	rs3935792-G	0.4811	3E-8		0.0108	[0.0069-0.0147] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1662	chr5	141254062	141254063	rs6888135	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	5q31.3	NR	rs6888135-A	0.4965	1E-10		1.039	[1.03-1.05]	Affymetrix, Illumina [NR] (imputed)	N
1663	chr5	141298590	141298591	rs6893037	33824429	Fjukstad KK	2021-04-06	Pharmacogenomics J	Genetic variants associated with cardiometabolic abnormalities during treatment with selective serotonin reuptake inhibitors: a genome-wide association study.	Triglyceride levels x SSRI defined daily dose interaction in schizophrenia or bipolar disorder	1,180 European ancestry individuals	NA	5q31.3	KIAA0141	rs6893037-G	NR	3E-9		1.41713	[0.95-1.88] unit increase	Illumina [NR] (imputed)	N
1663	chr5	141309823	141309824	rs351260	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	5q31.3		rs351260-A	0.3353	1E-8		0.13034911	[0.084-0.177] mmHg increase	Affymetrix, Illumina [242865] (imputed)	N
1663	chr5	141309823	141309824	rs351260	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	5q31.3		rs351260-A	0.3352	3E-10		0.10698914	[0.074-0.14] mmHg increase	Affymetrix, Illumina [242866] (imputed)	N
1663	chr5	141325248	141325249	rs105633	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Initial pursuit acceleration in psychotic disorders	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases.	NA	5q31.3	PCDH12	rs105633-?	NR	8E-12	(African)			Illumina [4404269] (imputed)	N
1663	chr5	141325248	141325249	rs105633	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Initial pursuit acceleration	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	5q31.3	PCDH12	rs105633-T	0.00625	2E-10	(African)			Illumina [4404269] (imputed)	N
1663	chr5	141369464	141369465	rs252090	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Superior temporal gyrus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	5q31.3	RNF14	rs252090-?		6E-6				Illumina [4322238] (imputed)	N
1663	chr5	141392456	141392457	rs2232193	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	5q31.3	GNPDA1	rs2232193-C	0.14889	2E-12		0.023083167	[0.017-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
1663	chr5	141400781	141400782	rs12108935	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs non-severe)	86 Finnish ancestry male severe erosion cases, 50 Finnish ancestry female severe erosion cases, 817 Finnish ancestry male non-severe erosion controls, 991 Finnish ancestry female non-severe erosion controls	NA	5q31.3	GNPDA1, FGF1, SPRY4	rs12108935-?	NR	6E-8	(male)	3.7	[2.01-6.76]	Illumina [NR] (imputed)	N
1663	chr5	141406996	141406997	rs252128	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	5q31.3		rs252128-C	0.301107	1E-10		0.015722774	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1663	chr5	141408111	141408112	rs66756037	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs none or mild)	136 Finnish ancestry severe erosion cases, 1011 Finnish ancestry mild or no erosion controls	NA	5q31.3	GNPDA1, SPRY4, FGF1	rs66756037-?	NR	5E-6				Illumina [NR] (imputed)	N
1663	chr5	141408111	141408112	rs66756037	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs non-severe)	86 Finnish ancestry male severe erosion cases, 50 Finnish ancestry female severe erosion cases, 817 Finnish ancestry male non-severe erosion controls, 991 Finnish ancestry female non-severe erosion controls	NA	5q31.3	GNPDA1, SPRY4, FGF1	rs66756037-?	NR	7E-6		2.5	[1.57-4.01]	Illumina [NR] (imputed)	N
1663	chr5	141408111	141408112	rs66756037	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs non-severe)	86 Finnish ancestry male severe erosion cases, 50 Finnish ancestry female severe erosion cases, 817 Finnish ancestry male non-severe erosion controls, 991 Finnish ancestry female non-severe erosion controls	NA	5q31.3	GNPDA1, FGF1	rs66756037-?	NR	3E-8	(male)	3.8	[2.06-6.90]	Illumina [NR] (imputed)	N
1664	chr5	141429149	141429150	rs112787780	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	5q31.3	NR	rs112787780-?	NR	5E-9				Illumina [7760689] (imputed)	N
1664	chr5	141444268	141444269	rs630203	29422769	Shah RL	2018-02-05	Mol Vis	A genome-wide association study of corneal astigmatism: The CREAM Consortium.	Corneal astigmatism	9,293 European ancestry cases, 12,957 European ancestry controls, 4,349 Asian ancestry cases, 4,771 Asian ancestry controls	NA	5q31.3	MRPL11P2	rs630203-G	0.26	9E-7		1.0869565	[1.05-1.14]	NR [~ 55000000] (imputed)	N
1664	chr5	141445773	141445774	rs252152	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Squamous cell lung carcinoma	7,426 European ancestry cases, 55,627 European ancestry controls	NA	5q31.3	GNPDA1, NDFIP1	rs252152-A	0.346340199	6E-6		1.0938516	[1.052336843-1.137004138]	Illumina [10439017] (imputed)	N
1664	chr5	141445979	141445980	rs6867913	22561531	Wan YI	2012-05-05	Thorax	Genome-wide association study to identify genetic determinants of severe asthma.	Asthma	933 European ancestry cases, 3,346 European ancestry controls	231 European ancestry cases, 1,345 European ancestry controls	5q31.3	NDFIP1	rs6867913-?	NR	4E-6		1.33	[1.18-1.49]	Illumina [6103628] (imputed)	N
1664	chr5	141462660	141462661	rs13187922	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	5q31.3	intergenic	rs13187922-T	0.5035	6E-14		0.0271496	[0.02-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
1664	chr5	141462660	141462661	rs13187922	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	5q31.3	intergenic	rs13187922-T	0.5035	2E-14		0.02757989	[0.02-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
1664	chr5	141462660	141462661	rs13187922	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	5q31.3	intergenic	rs13187922-T	0.5036	1E-13		0.02670642	[0.02-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
1664	chr5	141462660	141462661	rs13187922	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	5q31.3	intergenic	rs13187922-T	0.5036	1E-16		0.03008448	[0.023-0.037] unit increase	Affymetrix [~ 2500000] (imputed)	N
1664	chr5	141467855	141467856	rs12655443	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	5q31.3	NDFIP1	rs12655443-A	0.503664	2E-14		1.0480598	[1.04-1.06]	Affymetrix [8274727] (imputed)	N
1664	chr5	141467855	141467856	rs12655443	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Respiratory diseases	approximately 459,000 European ancestry individuals	NA	5q31.3		rs12655443-?	NR	6E-14				NR [~ 8900000] (imputed)	N
1664	chr5	141467855	141467856	rs12655443	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	5q31.3	Intergenic	rs12655443-A	0.5084	4E-8	(MTAG)	0.0072	[0.0047-0.0097] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1664	chr5	141468253	141468254	rs1821263	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	5q31.3	NR	rs1821263-?	NR	5E-8				Affymetrix [~ 8270000] (imputed)	N
1664	chr5	141473394	141473395	rs13161849	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	5q31.3		rs13161849-G	NR	3E-9		0.0122	[0.0083-0.0161] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
1664	chr5	141473394	141473395	rs13161849	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	5q31.3		rs13161849-?	NR	9E-8				NR [~ 8900000] (imputed)	N
1664	chr5	141479064	141479065	rs11167764	21102463	Franke A	2010-11-21	Nat Genet	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry trios	5q31.3	NDFIP1	rs11167764-C	0.796	2E-9		1.06	[1.02-1.11]	Affymetrix, Illumina [953241] (imputed)	N
1664	chr5	141482268	141482269	rs62384625	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count (basophil)	171,846 European ancestry individuals	NA	5q31.3	intergenic	rs62384625-T	0.3701	3E-10		0.02283405	[0.016-0.03] unit increase	Affymetrix [~ 2500000] (imputed)	N
1664	chr5	141482340	141482341	rs12717899	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	5q31.3		rs12717899-T	NR	8E-10		0.0147	[0.01-0.0194] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
1664	chr5	141489305	141489306	rs6580224	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q31.3	NR	rs6580224-G	0.622214	5E-90				Affymetrix, Illumina [19872809] (imputed)	N
1664	chr5	141489305	141489306	rs6580224	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	5q31.3		rs6580224-?	NR	2E-12				NR [~ 8900000] (imputed)	N
1664	chr5	141490586	141490587	rs4912622	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	5q31.3	NR	rs4912622-A	0.618703	1E-47		0.027368	[0.024-0.031] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1664	chr5	141491984	141491985	rs7700687	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	5q31.3	NDFIP1	rs7700687-T	0.617174	2E-20		0.021090075	[0.017-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1664	chr5	141491984	141491985	rs7700687	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	5q31.3	NR	rs7700687-T	0.617223	5E-86		0.040023	[0.036-0.044] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
1664	chr5	141491984	141491985	rs7700687	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	5q31.3		rs7700687-?	NR	4E-76				NR [~ 8900000] (imputed)	N
1664	chr5	141492418	141492419	rs7705042	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	5q31.3		rs7705042-A	NR	5E-24		0.0247	[0.02-0.029] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
1664	chr5	141492418	141492419	rs7705042	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	5q31.3		rs7705042-A	NR	1E-25		0.0255	[0.021-0.03] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
1664	chr5	141492418	141492419	rs7705042	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (childhood onset)	9,433 British ancestry cases, 318,237 British ancestry controls	NA	5q31.3	NR	rs7705042-?	NR	4E-7				Affymetrix [10894596] (imputed)	N
1664	chr5	141492418	141492419	rs7705042	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls, 2,149 African ancestry cases, 6,055 African ancestry controls, 1,239 Japanese ancestry cases, 3,976 Japanese ancestry controls, 606 Latino cases, 792 Latino controls	NA	5q31.3	NDFIP1, GNDPA1, SPRY4	rs7705042-A	0.63	8E-9		1.09	[1.06-1.12]	Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
1664	chr5	141492418	141492419	rs7705042	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls	NA	5q31.3	NDFIP1, GNPDA1, SPRY4	rs7705042-A	0.63	9E-10		0.08	[0.06-0.1] unit increase	Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
1664	chr5	141494933	141494934	rs10068717	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	5q31.3	NR	rs10068717-T	0.617734	2E-14		0.015237	[0.011-0.019] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
1664	chr5	141494933	141494934	rs10068717	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	5q31.3	NDFIP1	rs10068717-T	0.62	5E-15		1.042	[1.03-1.05]	Affymetrix, Illumina [8307659] (imputed)	N
1664	chr5	141495138	141495139	rs13188700	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	5q31.3		rs13188700-C	NR	2E-12		0.0143	[0.01-0.018] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
1664	chr5	141495138	141495139	rs13188700	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Asthma	38,369 European ancestry cases, 411,131 European ancestry controls, 13,015 East Asian ancestry cases, 162,933 East Asian ancestry controls	NA	5q31.3		rs13188700-C	NR	1E-10		0.0459	[0.032-0.06] unit increase	Affymetrix, Illumina [25837673] (imputed)	N
1664	chr5	141495714	141495715	rs10875596	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	5q31.3	NDFIP1	rs10875596-C	0.62	6E-26				NR [> 9500000] (imputed)	N
1664	chr5	141499040	141499041	rs1036207	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	5q31.3	NDFIP1	rs1036207-G	0.6161	1E-35		0.04570363	[0.039-0.053] unit increase	Affymetrix [~ 2500000] (imputed)	N
1664	chr5	141499040	141499041	rs1036207	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	5q31.3	NDFIP1	rs1036207-G	0.6162	2E-16		0.03026752	[0.023-0.037] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1664	chr5	141499040	141499041	rs1036207	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	5q31.3	NDFIP1	rs1036207-G	0.616	3E-23		0.03637484	[0.029-0.044] unit increase	Affymetrix [~ 2500000] (imputed)	N
1664	chr5	141499040	141499041	rs1036207	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	5q31.3	NDFIP1	rs1036207-G	0.6161	2E-17		0.03128892	[0.024-0.038] unit increase	Affymetrix [~ 2500000] (imputed)	N
1664	chr5	141499040	141499041	rs1036207	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	5q31.3	NDFIP1	rs1036207-G	0.6161	1E-34		0.04503617	[0.038-0.052] unit increase	Affymetrix [~ 2500000] (imputed)	N
1664	chr5	141499040	141499041	rs1036207	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	5q31.3	NDFIP1	rs1036207-C	0.62	4E-9		1.07		Illumina [161311]	N
1664	chr5	141500435	141500436	rs11749731	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q31.3	NR	rs11749731-C	0.62581	8E-15				Affymetrix, Illumina [20825802] (imputed)	N
1664	chr5	141502808	141502809	rs2338823	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	5q31.3		rs2338823-T	0.383	5E-11				Affymetrix [10369434] (imputed)	N
1664	chr5	141502808	141502809	rs2338823	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q31.3	NR	rs2338823-C	0.622184	3E-32				Affymetrix, Illumina [23114412] (imputed)	N
1664	chr5	141502808	141502809	rs2338823	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	5q31.3	NR	rs2338823-C	0.617889	9E-34		0.024581	[0.021-0.029] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
1664	chr5	141503058	141503059	rs2338822	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (adrenergics, inhalants)	28,880 European ancestry cases, 147,565 European ancestry controls, 5,880 East Asian ancestry cases, 172,846 East Asian ancestry controls	NA	5q31.3		rs2338822-C	NR	7E-13		0.0603	[0.044-0.077] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1664	chr5	141503869	141503870	rs6882226	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q31.3	NR	rs6882226-A	0.625132	6E-34				Affymetrix, Illumina [24649327] (imputed)	N
1664	chr5	141504394	141504395	rs61643712	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	5q31.3		rs61643712-A	NR	2E-48		0.0269	[0.023-0.03] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
1664	chr5	141504990	141504991	rs6883827	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	5q31.3		rs6883827-G	NR	1E-36		0.0248	[0.021-0.029] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1664	chr5	141506910	141506911	rs6874308	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	8,021 European ancestry cases, 16,489 European ancestry controls, 2,495 East Asian ancestry cases, 4,283 East Asian ancestry controls	NA	5q31.3		rs6874308-C	NR	5E-8		0.10905	[0.07-0.148] unit decrease	NR [2787054] (imputed)	N
1664	chr5	141509536	141509537	rs4391200	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	5q31.3	NR	rs4391200-G	0.618964	8E-34		0.022974	[0.019-0.027] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
1664	chr5	141509596	141509597	rs10062349	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	8,021 European ancestry cases, 16,489 European ancestry controls	NA	5q31.3		rs10062349-G	NR	7E-8		0.120129	[0.076-0.164] unit decrease	NR [5054572] (imputed)	N
1664	chr5	141510261	141510261	rs11405616	34103634	Valette K	2021-06-08	Commun Biol	Prioritization of candidate causal genes for asthma in susceptibility loci derived from UK Biobank.	Asthma	56,167 White-British ancestry cases, 352,255 White-British ancestry controls	NA	5q31.3	NDFIP1	rs11405616-CA	0.604204249142297	2E-12		0.04758603	[0.034-0.061] unit increase	Affymetrix [35186738] (imputed)	N
1664	chr5	141510261	141510261	rs11405616	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	5q31.3	NDFIP1	rs11405616-CA	0.605031	7E-31		0.02653047	[0.022-0.031] unit increase	Affymetrix [93095623] (imputed)	N
1664	chr5	141510261	141510261	rs11405616	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	5q31.3	NDFIP1	rs11405616-CA	0.605076	3E-32		0.027212331	[0.023-0.032] unit increase	Affymetrix [93095623] (imputed)	N
1664	chr5	141510261	141510261	rs11405616	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	5q31.3	NDFIP1	rs11405616-CA	0.605003	3E-11		0.015270915	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1664	chr5	141510261	141510261	rs11405616	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	5q31.3	NDFIP1	rs11405616-CA	0.6036	9E-17		0.03096152	[0.024-0.038] unit increase	Affymetrix [~ 2500000] (imputed)	N
1664	chr5	141510261	141510261	rs11405616	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	5q31.3	NDFIP1	rs11405616-CA	0.6032	1E-29		0.04289569	[0.035-0.05] unit increase	Affymetrix [~ 2500000] (imputed)	N
1664	chr5	141510261	141510261	rs11405616	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	5q31.3	NDFIP1	rs11405616-CA	0.6032	3E-17		0.03202222	[0.025-0.039] unit increase	Affymetrix [~ 2500000] (imputed)	N
1664	chr5	141510261	141510261	rs11405616	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	5q31.3	NDFIP1	rs11405616-CA	0.6035	1E-17		0.031876	[0.025-0.039] unit increase	Affymetrix [~ 2500000] (imputed)	N
1664	chr5	141510753	141510754	rs6580229	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	5q31.3		rs6580229-A	0.383	2E-16				Affymetrix [10369434] (imputed)	N
1664	chr5	141510753	141510754	rs6580229	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	5q31.3		rs6580229-?	NR	8E-30				NR [~ 8900000] (imputed)	N
1664	chr5	141513017	141513018	rs62381975	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	5q31.3	NR	rs62381975-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
1664	chr5	141513203	141513204	rs6863411	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	5q31.3	NDFIP1	rs6863411-?		5E-10				Illumina [9725440] (imputed)	N
1664	chr5	141513203	141513204	rs6863411	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	5q31.3	NDFIP1	rs6863411-?		7E-12				Illumina [9560910] (imputed)	N
1664	chr5	141513203	141513204	rs6863411	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	5q31.3	NDFIP1	rs6863411-?	NR	2E-9	(subset analysis)			Illumina [130052]	N
1664	chr5	141513203	141513204	rs6863411	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	5q31.3	NR	rs6863411-T	0.63	6E-7	(EA)	1.0674366		Affymetrix, Illumina [~ 9000000] (imputed)	N
1664	chr5	141513203	141513204	rs6863411	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	5q31.3	NR	rs6863411-T	0.63	2E-14	(EA)	1.1018033	[1.08-1.13]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1664	chr5	141513203	141513204	rs6863411	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	5q31.3	SPRY4, NDFIP1	rs6863411-T	0.63	4E-14		1.089	[1.057-1.121]	Affymetrix, Illumina [1230000] (imputed)	N
1664	chr5	141513690	141513691	rs2043280	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q31.3	NR	rs2043280-G	0.627967	9E-53				Affymetrix, Illumina [24588908] (imputed)	N
1664	chr5	141514735	141514735	rs35845166	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	5q31.3	NDFIP1	rs35845166-GGG	0.614985	4E-63		0.039238736	[0.035-0.044] unit increase	Affymetrix [93095623] (imputed)	N
1664	chr5	141514735	141514735	rs35845166	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	5q31.3	NDFIP1	rs35845166-GGG	0.614981	7E-39		0.030459378	[0.026-0.035] unit increase	Affymetrix [93095623] (imputed)	N
1664	chr5	141515563	141515564	rs7733850	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	5q31.3		rs7733850-C	0.382	1E-17				Affymetrix [10369434] (imputed)	N
1664	chr5	141518652	141518653	rs6881942	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Platelet count	108,208 Japanese ancestry individuals	NA	5q31.3	NDFIP1	rs6881942-?	NR	3E-9		0.02602	[0.017-0.035] unit increase novel	Illumina [6108953] (imputed)	N
1664	chr5	141518940	141518940	rs10699671	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	5q31.3	NDFIP1	rs10699671-AAGG	0.616701	7E-44		0.031553887	[0.027-0.036] unit increase	Affymetrix [93095623] (imputed)	N
1664	chr5	141518940	141518940	rs10699671	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	5q31.3	NDFIP1	rs10699671-AAGG	0.616701	2E-60		0.037620433	[0.033-0.042] unit increase	Affymetrix [93095623] (imputed)	N
1664	chr5	141518940	141518940	rs10699671	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (adult onset)	26,582 European ancestry cases, 300,671 European ancestry controls	16,297 European ancestry cases, 217,711 European ancestry controls	5q31.3	NDFIP1	rs10699671-?	NR	2E-12		1.052	[1.04-1.07]	Affymetrix [9000000] (imputed)	N
1664	chr5	141518940	141518940	rs10699671	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	5q31.3	NDFIP1	rs10699671-AAGG	NR	2E-16		1.059	[1.05-1.07]	Affymetrix [9000000] (imputed)	N
1664	chr5	141519295	141519296	rs4912807	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	5q31.3	NR	rs4912807-C	0.617494	1E-9		0.012874	[0.0087-0.017] SD unit increase	Affymetrix, Illumina [50036608] (imputed)	N
1664	chr5	141522999	141523000	rs1062158	21833088	Sawcer S	2011-08-11	Nature	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	5q31.3	NDFIP1	rs1062158-A	NR	2E-6		1.08	[1.07-1.1]	Illumina [465434]	N
1664	chr5	141529761	141529766	rs200634877	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Asthma	28,399 European ancestry cases, 128,843 European ancestry controls	NA	5q31.3	NDFIP1	rs200634877-?	NR	3E-8		1.0638298	[1.04-1.09]	Illumina [13747813] (imputed)	N
1664	chr5	141533061	141533062	rs449454	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	5q31.3		rs449454-A	0.383	6E-36				Affymetrix [10369434] (imputed)	N
1664	chr5	141533061	141533062	rs449454	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	5q31.3	NDFIP1	rs449454-A	0.3832	1E-12				Affymetrix [15688218] (imputed)	N
1664	chr5	141533061	141533062	rs449454	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic disease (asthma, hay fever or eczema)	106,772 European ancestry cases, 239,773 European ancestry controls	83,335 cases, 34,934 controls	5q31.3	NR	rs449454-G	0.6168	9E-14		1.0427529	[1.03-1.05]	Affymetrix [15688218] (imputed)	N
1664	chr5	141533061	141533062	rs449454	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	5q31.3	NDFIP1	rs449454-?	NR	2E-22		1.076	[1.06-1.09]	Affymetrix [9000000] (imputed)	N
1664	chr5	141533061	141533062	rs449454	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	5q31.3	NDFIP1	rs449454-G	NR	1E-16		1.059	[1.05-1.07]	Affymetrix [9000000] (imputed)	N
1664	chr5	141533061	141533062	rs449454	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	5q31.3	NR	rs449454-?	NR	2E-14	(EA)			Affymetrix, Illumina [~ 9000000] (imputed)	N
1664	chr5	141538016	141538017	rs249681	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	5q31.3	NDFIP1	rs249681-C	0.617427	3E-11		0.015272784	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1664	chr5	141538016	141538017	rs249681	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	5q31.3	LOC107986455	rs249681-C	0.6198250000000001	2E-16		1.0521885	[1.03951488876972-1.06501664049565]	NR [9572556] (imputed)	N
1664	chr5	141538016	141538017	rs249681	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (adrenergics, inhalants)	28,880 European ancestry cases, 147,565 European ancestry controls	NA	5q31.3	NDFIP1	rs249681-G	0.381436	4E-12		0.06455301	[0.046-0.083] unit decrease	Affymetrix [7288503] (imputed)	N
1664	chr5	141539338	141539339	rs249677	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	5q31.3		rs249677-A	0.633211	2E-12		0.016165055	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1664	chr5	141539338	141539339	rs249677	31959851	Olafsdottir TA	2020-01-20	Nat Commun	Eighty-eight variants highlight the role of T cell regulation and airway remodeling in asthma pathogenesis.	Asthma	16,247 European ancestry cases, 346,486 European ancestry controls, 52,942 cases, 355,713 controls	NA	5q31.3	NDFIP1, GNPDA1, SPRY4, LOC101926941, RNF14, PCDH12	rs249677-A	0.63245	9E-14		1.05018	[1.04-1.06]	Affymetrix [32463443] (imputed)	N
1664	chr5	141539338	141539339	rs249677	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	5q31.3	NR	rs249677-?	NR	8E-10				Affymetrix [~ 8270000] (imputed)	N
1664	chr5	141539338	141539339	rs249677	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	5q31.3	NR	rs249677-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
1664	chr5	141539338	141539339	rs249677	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	5q31.3	NDFIP1	rs249677-A	NR	6E-13		1.0737679	NR	Affymetrix, Illumina [8278136] (imputed)	N
1664	chr5	141539338	141539339	rs249677	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	5q31.3	NR	rs249677-A	0.6331	6E-11		1.0413413	[1.03-1.05]	Affymetrix [15688218] (imputed)	N
1664	chr5	141539338	141539339	rs249677	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	5q31.3		rs249677-?	NR	6E-11				NR [~ 8900000] (imputed)	N
1664	chr5	141539338	141539339	rs249677	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	5q31.3	intergenic	rs249677-A	0.6319	4E-11		0.02453939	[0.017-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
1664	chr5	141553206	141553207	rs2915864	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 20)	2,187 European ancestry individuals	NA	5q31.3	NR	rs2915864-G	0.102	2E-6		0.2339	[0.14-0.33] unit increase	Illumina [10677593] (imputed)	N
1665	chr5	141564644	141564645	rs2961693	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	145,648 East Asian ancestry individuals	NA	5q31.3	NR	rs2961693-A	0.630558	1E-10		0.024812	[0.017-0.032] SD units decrease	Affymetrix, Illumina [16710488] (imputed)	N
1665	chr5	141565827	141565828	rs17526926	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-to-hip ratio adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,049 whole genome sequenced individuals, 29,518 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,001 Mylopotamos (founder/genetic isolate) individuals, 867 Pomak (founder/genetic isolate) individuals	206,045 European ancestry individuals	5q31.3	CTC-463A16.1	rs17526926-T	0.3192	1E-6		0.0465	[0.028-0.065] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1665	chr5	141565827	141565828	rs17526926	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-hip ratio	1,254 whole genome sequenced European ancestry individuals, 3,071 whole genome sequenced individuals, 29,723 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,053 Mylopotamos (founder/genetic isolate) individuals, 879 Pomak (founder/genetic isolate) individuals	206,053 European ancestry individuals	5q31.3	CTC-463A16.1	rs17526926-T	0.3193	1E-6		0.0467	[0.028-0.065] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1665	chr5	141566526	141566527	rs4912810	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	5q31.3		rs4912810-T	0.36735	3E-11		0.022908	[0.016-0.03] unit increase	Illumina [13478928] (imputed)	N
1665	chr5	141600762	141600763	rs2961701	33824429	Fjukstad KK	2021-04-06	Pharmacogenomics J	Genetic variants associated with cardiometabolic abnormalities during treatment with selective serotonin reuptake inhibitors: a genome-wide association study.	HDL levels x SSRI levels (escitalopram or citalopram) interaction in schizophrenia or bipolar disorder	181 European ancestry individuals	NA	5q31.3	NDFIP1	rs2961701-G	NR	6E-7		6.29E-18	[-15.55295-15.55295] unit increase	Illumina [NR] (imputed)	N
1665	chr5	141621883	141621884	rs2908532	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	5q31.3	NDFIP1, SPRY4	rs2908532-?	NR	2E-7		0.017774332	[0.011-0.025] unit increase	Illumina [27896057] (imputed)	N
1665	chr5	141625170	141625171	rs193072374	31206233	Real LM	2019-06-17	Liver Int	A genome-wide association study in low susceptibility to hepatitis C virus infection (GEHEP012 Study).	Low susceptibility to hepatitis C infection	27 Spanish ancestry uninfected high-risk individuals, 804 Spanish ancestry infected individuals	NA	5q31.3	NDFIP1	rs193072374-C	6.219E-4	5E-6		128.6	[14.11-1171]	Affymetrix [7675561] (imputed)	N
1665	chr5	141663107	141663108	rs6864755	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	5q31.3	SPRY4	rs6864755-T	0.8222	5E-6		0.0409	[0.023-0.059] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1665	chr5	141669838	141669839	rs10051199	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	5q31.3	NR	rs10051199-T	0.476	2E-6	(EA)	0.0293	[0.017-0.041] unit decrease	Illumina [~ 11800000] (imputed)	N
1665	chr5	141681787	141681788	rs4624820	28604732	Wang Z	2017-06-12	Nat Genet	Meta-analysis of five genome-wide association studies identifies multiple new loci associated with testicular germ cell tumor.	Testicular germ cell tumor	3,558 European ancestry cases, 13,970 European ancestry controls	NA	5q31.3	SPRY4	rs4624820-A	0.54	3E-46		1.51	1.42-1.59	Illumina [9210350] (imputed)	N
1665	chr5	141681787	141681788	rs4624820	28604728	Litchfield K	2017-06-12	Nat Genet	Identification of 19 new risk loci and potential regulatory mechanisms influencing susceptibility to testicular germ cell tumor.	Testicular germ cell tumor	5,518 European ancestry cases, 19,055 European ancestry controls	1,801 European ancestry cases, 4,027 European ancestry controls	5q31.3	SPRY4	rs4624820-G	0.56	3E-57		1.47	[1.43-1.52]	Illumina [at least 371504] (imputed)	N
1665	chr5	141681787	141681788	rs4624820	23666240	Ruark E	2013-05-12	Nat Genet	Identification of nine new susceptibility loci for testicular cancer, including variants near DAZL and PRDM14.	Testicular germ cell tumor	986 European ancestry cases, 4,946 European ancestry controls	1,064 European ancestry cases, 10,082 European ancestry controls	5q31.3	SPRY4	rs4624820-A	0.54	3E-31		1.52	[1.38-1.67]	Illumina [307291]	N
1665	chr5	141681787	141681788	rs4624820	23666239	Chung CC	2013-05-12	Nat Genet	Meta-analysis identifies four new loci associated with testicular germ cell tumor.	Testicular germ cell tumor	582 European ancestry male cases, 1,056 European ancestry male controls	3,560 European ancestry male cases, 8,510 European ancestry male controls	5q31.3	SPRY4	rs4624820-G	NR	8E-10		1.6393	[1.39-1.89]	Illumina [NR]	N
1665	chr5	141681787	141681788	rs4624820	20543847	Turnbull C	2010-06-13	Nat Genet	Variants near DMRT1, TERT and ATF7IP are associated with testicular germ cell cancer.	Testicular germ cell cancer	979 European ancestry cases, 4,947 European ancestry controls	664 European ancestry cases, 3,456 European ancestry controls	5q31.3	SPRY4	rs4624820-?	0.54	1E-14		1.47	[1.33-1.64]	Illumina [298782]	N
1665	chr5	141681787	141681788	rs4624820	19483681	Rapley EA	2009-05-31	Nat Genet	A genome-wide association study of testicular germ cell tumor.	Testicular germ cell tumor	730 cases, 1,435 controls	571 cases, 1,806 controls	5q31.3	SPRY4	rs4624820-A	0.54	3E-13		1.37	[1.19-1.58]	Illumina [307666]	N
1665	chr5	141685705	141685706	rs7729647	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5q31.3		rs7729647-?	NR	9E-12				NR [~ 8900000] (imputed)	N
1665	chr5	141686531	141686532	rs7717417	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)(bidirectional)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	5q31.3		rs7717417-A	NR	6E-13				Affymetrix [7846216] (imputed)	N
1665	chr5	141687638	141687639	rs6897876	31902109	Li D	2020-01-04	Genes Genomics	Progressive effects of single-nucleotide polymorphisms on 16 phenotypic traits based on longitudinal data.	Physiological traits	up to 6,835 Korean ancestry individuals	NA	5q31.3	NDFIP1, SPRY4	rs6897876-C	0.2682	6E-6	(BMI)	0.01607	NR unit increase	Affymetrix [305158]	N
1666	chr5	141701324	141701325	rs13362006	34050765	Zhang L	2021-05-29	J Clin Endocrinol Metab	Joint genome-wide association analyses identified 49 novel loci for age at natural menopause.	Age at menopause	181,219 European ancestry individuals, 43,861 East Asian ancestry individuals	NA	5q31.3		rs13362006-A	0.72	5E-13		0.1	unit decrease	Illumina [2093892] (imputed)	N
1666	chr5	141701324	141701325	rs13362006	34050765	Zhang L	2021-05-29	J Clin Endocrinol Metab	Joint genome-wide association analyses identified 49 novel loci for age at natural menopause.	Age at menopause	181,219 European ancestry individuals	NA	5q31.3		rs13362006-A	0.72	1E-12		0.11	unit decrease	Illumina [2398641] (imputed)	N
1666	chr5	141708189	141708190	rs34427173	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	5q31.3	LOC101926941	rs34427173-?	NR	9E-10		0.018666353	[0.013-0.025] unit decrease	Illumina [27896057] (imputed)	N
1666	chr5	141710468	141710469	rs74557139	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Staphylococcus aureus abundance in stool	5,959 Finnish ancestry individuals	NA	5q31.3		rs74557139-G	0.100591	2E-8		0.0546427	[0.036-0.074] unit increase	Illumina [7980478] (imputed)	N
1666	chr5	141712202	141712202	rs559160160	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	5q31.3	NR	rs559160160-ATT	NR	5E-10		0.0164	[0.011-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
1666	chr5	141717427	141717428	rs34433004	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	5q31.3	NR	rs34433004-A	0.350923	5E-10		0.0200589	[0.014-0.026] unit increase	NR [19129689] (imputed)	N
1666	chr5	141727969	141727970	rs76271629	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	5q31.3		rs76271629-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1666	chr5	141740619	141740620	rs1650911	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	NA	5q31.3	AC005592.2	rs1650911-G	0.23529999999999995	4E-12		0.2549	[0.18-0.33] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1666	chr5	141744511	141744512	rs10061008	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	5q31.3		rs10061008-?	NR	9E-9				NR [~ 8900000] (imputed)	N
1666	chr5	141762949	141762950	rs59983575	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		SPRY4-AS1	rs59983575-?	NR	5E-9		1.34533	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1666	chr5	141769374	141769375	rs254431	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	5q31.3	AC005592.2	rs254431-A	NR	1E-9		0.0256144	[0.017-0.034] unit increase	Affymetrix [319769] (imputed)	N
1666	chr5	141769374	141769375	rs254431	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	5q31.3	AC005592.2	rs254431-A	NR	2E-9		0.0251889	[0.017-0.033] unit increase	Affymetrix [319769] (imputed)	N
1666	chr5	141772902	141772903	rs254426	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	5q31.3	AC005592.2	rs254426-C	NR	3E-8		0.0237562	[0.015-0.032] unit decrease	Affymetrix [321788] (imputed)	N
1666	chr5	141772902	141772903	rs254426	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	5q31.3	AC005592.2	rs254426-C	NR	2E-10		0.0263191	[0.018-0.034] unit decrease	Affymetrix [321016] (imputed)	N
1666	chr5	141775629	141775630	rs6861591	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	5q31.3		rs6861591-C	NR	1E-11		0.0423	[0.03-0.055] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1666	chr5	141775867	141775868	rs6883937	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	5q31.3	NR	rs6883937-G	0.273152	1E-8		0.0431865	[0.028-0.058] unit decrease	Affymetrix [17914406] (imputed)	N
1666	chr5	141779527	141779528	rs7716114	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	5q31.3	AC005592.2	rs7716114-G	0.287064	3E-10		0.042465128	[0.029-0.056] unit decrease	Affymetrix [7288503] (imputed)	N
1666	chr5	141790324	141790325	rs10477176	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	5q31.3	SPRY4	rs10477176-A	0.7439	7E-10		0.1845	[0.13-0.24] mmHg increase	Affymetrix [NR] (imputed)	N
1666	chr5	141792032	141792033	rs253447	34593835	Takahashi Y	2021-09-30	Sci Rep	A genome-wide association study identifies a novel candidate locus at the DLGAP1 gene with susceptibility to resistant hypertension in the Japanese population.	Resistant hypertension	2,705 Japanese ancestry cases, 21,296 Japanese ancestry controls	NA	5q31.3		rs253447-C	0.46	6E-6		0.88	[0.83-0.93]	Illumina [7199488] (imputed)	N
1666	chr5	141793904	141793905	rs253443	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	5q31.3		rs253443-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1666	chr5	141796190	141796191	rs253440	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	5q31.3		rs253440-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1666	chr5	141805087	141805088	rs10062749	34450027	Boer CG	2021-08-24	Cell	Deciphering osteoarthritis genetics across 826,690 individuals from 9 populations.	Osteoarthritis of the hand	20,901 European ancestry cases, 282,881 European ancestry controls	NA	5q31.3		rs10062749-T	0.2691	2E-9		1.0848048	[1.056270692-1.114109588]	Affymetrix, Illumina [NR] (imputed)	N
1666	chr5	141810581	141810582	rs1644578	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	5q31.3		rs1644578-T	NR	4E-18		0.0146	[0.011-0.018] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1666	chr5	141810581	141810582	rs1644578	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	5q31.3		rs1644578-T	NR	3E-10		0.0121	[0.0084-0.0158] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1666	chr5	141811605	141811606	rs153662	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	5q31.3	SPRY4-AS1	rs153662-T	0.5886	1E-12		0.0136	[0.0099-0.0173] unit increase	Affymetrix [18391927] (imputed)	N
1666	chr5	141811605	141811606	rs153662	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5q31.3		rs153662-?	NR	1E-12				NR [~ 8900000] (imputed)	N
1666	chr5	141816614	141816615	rs3853475	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	5q31.3		rs3853475-C	0.589593	2E-11		0.0184632	[0.013-0.024] unit decrease	Illumina [13479924] (imputed)	N
1666	chr5	141817753	141817754	rs3853476	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	5q31.3	NR	rs3853476-A	0.5816	8E-7	(East Asian)	0.3153	[0.19-0.44] unit decrease	Illumina [6200000] (imputed)	N
1666	chr5	141817753	141817754	rs3853476	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	5q31.3	NR	rs3853476-A	0.5816	1E-6	(East Asian)	0.2182	[0.13-0.31] unit decrease	Illumina [6200000] (imputed)	N
1666	chr5	141817753	141817754	rs3853476	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	5q31.3	NR	rs3853476-A	0.5785	6E-9		0.1995	[0.13-0.27] unit decrease	Illumina [6200000] (imputed)	N
1667	chr5	141846695	141846696	rs116642997	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	7,894 Sub-Saharan African ancestry individuals	NA	5q31.3		rs116642997-G	0.98827	3E-6		0.0411331	[0.024-0.059] unit decrease	Illumina [13900000] (imputed)	N
1667	chr5	141857414	141857415	rs10065321	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	5q31.3	NR	rs10065321-?	NR	8E-10				Affymetrix [~ 8270000] (imputed)	N
1667	chr5	141857414	141857415	rs10065321	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	5q31.3	NR	rs10065321-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1667	chr5	141857414	141857415	rs10065321	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	5q31.3		rs10065321-?	NR	9E-10				NR [~ 8900000] (imputed)	N
1667	chr5	141858426	141858427	rs4912855	29535370	Kleinstein SE	2018-02-28	Genes Immun	Genome-wide association study (GWAS) of human host factors influencing viral severity of herpes simplex virus type 2 (HSV-2).	Virologic severity in Herpes simplex virus type 2 infection	223 European ancestry individuals	NA	5q31.3	LOC101926941	rs4912855-?	NR	2E-6				Illumina [1539908]	N
1667	chr5	141863603	141863604	rs17577085	21347282	Lettre G	2011-02-10	PLoS Genet	Genome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project.	Coronary heart disease	260 African American cases, 5,053 African American controls	621 African American cases, 1,629 African American controls	5q31.3	intergenic	rs17577085-?	0.46	4E-6		2.631579	[1.72-3.85]	Affymetrix [~ 2740000] (imputed)	N
1667	chr5	141864372	141864373	rs3850579	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Dementia and core Alzheimer's disease neuropathologic changes	up to 3,887 cases, up to 1,027 controls	NA	5q31.3	intergenic	rs3850579-G	0.5266	7E-6	(Primary)	0.2647	[0.15-0.38] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1667	chr5	141887905	141887906	rs249733	27723756	Wang J	2016-10-10	Nat Genet	Genome-wide association analysis identifies variation in vitamin D receptor and other host factors influencing the gut microbiota.	Gut microbiota (bacterial taxa)	1,812 European ancestry individuals	NA	5q31.3	SPRY4	rs249733-T	NR	5E-10	(OTU10032 unclassified Enterobacteriaceae)	0.65	unit decrease	Affymetrix, Illumina [6344846] (imputed)	N
1667	chr5	141901899	141901900	rs7703260	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	5q31.3	SPRY4-AS1, FGF1	rs7703260-?	NR	2E-11		0.0394532	[0.028-0.051] unit increase	Illumina [4804024] (imputed)	N
1667	chr5	141911175	141911176	rs10077941	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	5q31.3	FGF1	rs10077941-G	0.886222	2E-10		0.0052672	[0.0037-0.0069] unit decrease	Affymetrix [13995440] (imputed)	N
1667	chr5	141911459	141911460	rs11325555	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	5q31.3	NR	rs11325555-A	NR	3E-9		0.022	[0.015-0.029] unit increase	Affymetrix [9000000] (imputed)	N
1667	chr5	141912840	141912841	rs4244029	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	5q31.3		rs4244029-C	NR	2E-6		0.026	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1667	chr5	141912840	141912841	rs4244029	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	265,204 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	5q31.3	NR	rs4244029-C	NR	3E-9		0.026	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1667	chr5	141912840	141912841	rs4244029	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	5q31.3		rs4244029-C	NR	3E-6	(EA)	0.031	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1667	chr5	141912840	141912841	rs4244029	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	5q31.3		rs4244029-C	NR	1E-6		0.028	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1667	chr5	141912840	141912841	rs4244029	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	265,204 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	5q31.3	NR	rs4244029-C	NR	4E-10		0.027	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1667	chr5	141913502	141913503	rs249756	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	5q31.3	intergenic	rs249756-A	0.3329	4E-8		0.0158	[0.01-0.021] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1667	chr5	141918584	141918585	rs249767	29760442	Iglesias AI	2018-05-14	Nat Commun	Cross-ancestry genome-wide association analysis of corneal thickness strengthens link between complex and Mendelian eye diseases.	Central corneal thickness	17,803 European ancestry individuals, 8,107 Asian ancestry individuals	NA	5q31.3	FGF1	rs249767-T	0.67	5E-9		2.07	[1.38-2.76] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1667	chr5	141921093	141921094	rs249768	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs249768-G	0.792145	4E-9		0.0647586	[0.043-0.087] increase	Affymetrix [11014269] (imputed)	N
1667	chr5	141921633	141921634	rs152446	32528159	Choquet H	2020-06-11	Commun Biol	A multiethnic genome-wide analysis of 44,039 individuals identifies 41 new loci associated with central corneal thickness.	Central corneal thickness	32,292 European ancestry individuals, 9,623 East Asian ancestry individuals, 1,367 Hispanic/Latino individuals, 757 African American  individuals	NA	5q31.3	FGF1	rs152446-?	NA	7E-12		1.88	[1.35-2.41] unit increase	Affymetrix [5541230] (imputed)	N
1667	chr5	141924394	141924395	rs152439	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	5q31.3	NR	rs152439-?	NR	4E-6				Affymetrix [5486770] (imputed)	N
1668	chr5	141973500	141973501	rs34000	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	5q31.3	AC005592.2, FGF1	rs34000-C	NR	1E-10		0.0185327	[0.013-0.024] unit decrease	Affymetrix [319769] (imputed)	N
1668	chr5	141973500	141973501	rs34000	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	5q31.3	AC005592.2, FGF1	rs34000-C	NR	5E-11		0.0189688	[0.013-0.025] unit decrease	Affymetrix [319769] (imputed)	N
1668	chr5	141973500	141973501	rs34000	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	5q31.3	AC005592.2, FGF1	rs34000-C	NR	2E-8		0.0164252	[0.011-0.022] unit decrease	Affymetrix [321169] (imputed)	N
1668	chr5	141973500	141973501	rs34000	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	5q31.3	NR	rs34000-?	NR	1E-10				Affymetrix [~ 8270000] (imputed)	N
1668	chr5	141973500	141973501	rs34000	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	5q31.3		rs34000-?	NR	5E-11				NR [~ 8900000] (imputed)	N
1668	chr5	141973500	141973501	rs34000	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	5q31.3	NR	rs34000-T	0.6	4E-14		0.014	[0.01-0.018] unit increase	NR [~ 27400000] (imputed)	N
1668	chr5	141973500	141973501	rs34000	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	5q31.3	NR	rs34000-T	0.6002	5E-9		0.0107	[0.0072-0.0142] unit increase	NR [~ 27400000] (imputed)	N
1668	chr5	141976944	141976945	rs34005	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	5q31.3	AC005592.2, FGF1	rs34005-A	NR	2E-8		0.015985	[0.01-0.022] unit decrease	Affymetrix [321114] (imputed)	N
1668	chr5	141985378	141985379	rs250100	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5q31.3		rs250100-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1668	chr5	141997192	141997193	rs4912644	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5q31.3	ARHGAP26	rs4912644-?	NR	4E-6	(salicylurate)	0.40070742	[0.23-0.57] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1668	chr5	142017859	142017860	rs152528	21348951	Parsa A	2011-02-01	Clin Transl Sci	Hypertrophy-associated polymorphisms ascertained in a founder cohort applied to heart failure risk and mortality.	Cardiac hypertrophy	851 Old Order Amish individuals	NA	5q31.3	FGF1	rs152528-?	NR	8E-7	(recessive)			Affymetrix [361034]	N
1668	chr5	142024255	142024256	rs2070715	31219150	Ekenberg C	2019-06-13	J Infect Dis	Single nucleotide polymorphisms in HLA alleles are associated with HIV-1 viral load in demographically diverse, ART-naive participants from the START trial.	Pre-treatment viral load in HIV-1 infection	1,398 European ancestry individuals, 572 Black individuals, 418 Hispanic individuals, 13 Asian ancestry individuals, 39 individuals	NA	5q31.3	FGF1	rs2070715-C	0.46	5E-16		0.19	[0.15-0.24] unit increase	Affymetrix [339439]	N
1668	chr5	142047830	142047831	rs9324887	32390946	Liu L	2020-04-22	Front Endocrinol (Lausanne)	Twelve New Genomic Loci Associated With Bone Mineral Density.	Total body bone mineral density (MTAG)	66,628 individuals	NA	5q31.3	NR	rs9324887-A	0.72	1E-9		0.03	[0.022-0.038] unit decrease	Affymetrix, Illumina [7369691] (imputed)	N
1668	chr5	142047830	142047831	rs9324887	32390946	Liu L	2020-04-22	Front Endocrinol (Lausanne)	Twelve New Genomic Loci Associated With Bone Mineral Density.	Heel bone mineral density (MTAG)	426,824 individuals	NA	5q31.3	NR	rs9324887-A	0.72	2E-8		0.02	[0.014-0.026] unit decrease	NR [7369691] (imputed)	N
1668	chr5	142048306	142048307	rs9324890	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	5q31.3		rs9324890-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1668	chr5	142048306	142048307	rs9324890	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	5q31.3		rs9324890-?	NR	1E-9		0.0139783	[0.0094-0.0186] unit decrease	Affymetrix [20259828] (imputed)	N
1668	chr5	142076660	142076661	rs6580256	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	5q31.3	FGF1	rs6580256-T	NR	9E-17		0.0397843	[0.03-0.049] unit increase	Affymetrix [319769] (imputed)	N
1668	chr5	142076660	142076661	rs6580256	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	5q31.3	FGF1	rs6580256-T	NR	4E-17		0.0402074	[0.031-0.05] unit increase	Affymetrix [319769] (imputed)	N
1668	chr5	142076660	142076661	rs6580256	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	5q31.3	FGF1	rs6580256-T	NR	5E-9		0.0281531	[0.019-0.038] unit increase	Affymetrix [321114] (imputed)	N
1668	chr5	142076660	142076661	rs6580256	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	5q31.3	FGF1	rs6580256-T	NR	2E-10		0.0317754	[0.022-0.042] unit decrease	Affymetrix [321788] (imputed)	N
1668	chr5	142076660	142076661	rs6580256	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	5q31.3	FGF1	rs6580256-T	NR	3E-8		0.0268812	[0.017-0.036] unit increase	Affymetrix [321169] (imputed)	N
1668	chr5	142077714	142077715	rs10477191	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	5q31.3	FGF1	rs10477191-G	NR	4E-23		0.0687854	[0.055-0.082] unit increase	Affymetrix [319769] (imputed)	N
1668	chr5	142077714	142077715	rs10477191	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	5q31.3	FGF1	rs10477191-G	NR	4E-23		0.0689102	[0.055-0.083] unit increase	Affymetrix [319769] (imputed)	N
1668	chr5	142077714	142077715	rs10477191	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	5q31.3	FGF1	rs10477191-G	NR	2E-14		0.0535008	[0.04-0.067] unit increase	Affymetrix [321114] (imputed)	N
1668	chr5	142077714	142077715	rs10477191	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	5q31.3	FGF1	rs10477191-G	NR	7E-10		0.0444566	[0.03-0.059] unit decrease	Affymetrix [321788] (imputed)	N
1668	chr5	142077714	142077715	rs10477191	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	5q31.3	FGF1	rs10477191-G	NR	1E-13		0.0522372	[0.038-0.066] unit increase	Affymetrix [321169] (imputed)	N
1668	chr5	142077714	142077715	rs10477191	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Waist-hip ratio	9,140 African American females, 11,555 Hispanic/Latino females, 1,843 Asian ancestry females, 1,715 Native Hawaiian ancestry females, 585 Native American ancestry females	NA	5q31.3	FGF1	rs10477191-?	NR	4E-7	(AA)	0.07891479	[0.048-0.109] unit increase	Illumina [30305130] (imputed)	N
1668	chr5	142077714	142077715	rs10477191	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Waist-hip ratio	9,140 African American females, 11,555 Hispanic/Latino females, 1,843 Asian ancestry females, 1,715 Native Hawaiian ancestry females, 585 Native American ancestry females	NA	5q31.3	FGF1	rs10477191-?	NR	1E-9		0.065	[0.043-0.087] unit increase	Illumina [30305130] (imputed)	N
1668	chr5	142077714	142077715	rs10477191	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	5q31.3		rs10477191-?	NR	2E-17				NR [~ 8900000] (imputed)	N
1668	chr5	142080084	142080085	rs6893858	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	5q31.3	NR	rs6893858-C	0.9727	4E-6	(Trans/cis-18:2, EA)	0.0143	[0.0082-0.0204] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1668	chr5	142081527	142081528	rs1860228	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	5q31.3	AC005592.3	rs1860228-T	NR	5E-10		0.0422651	[0.029-0.056] unit increase	Affymetrix [319769] (imputed)	N
1668	chr5	142081527	142081528	rs1860228	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	5q31.3	AC005592.3	rs1860228-T	NR	3E-10		0.042722	[0.029-0.056] unit increase	Affymetrix [319769] (imputed)	N
1668	chr5	142081943	142081944	rs6580257	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	5q31.3	AC005592.3	rs6580257-C	NR	8E-9		0.0304626	[0.02-0.041] unit increase	Affymetrix [319769] (imputed)	N
1668	chr5	142081943	142081944	rs6580257	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	5q31.3	AC005592.3	rs6580257-C	NR	5E-9		0.0309001	[0.021-0.041] unit increase	Affymetrix [319769] (imputed)	N
1669	chr5	142083968	142083969	rs112907088	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	5q31.3	NR	rs112907088-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
1669	chr5	142083968	142083969	rs112907088	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	5q31.3	NR	rs112907088-A	0.9755	2E-10		0.0409	[0.028-0.054] unit decrease	NR [~ 27400000] (imputed)	N
1669	chr5	142086636	142086637	rs28480164	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	5q31.3	AC005592.3	rs28480164-G	NR	2E-15		0.0390298	[0.029-0.049] unit increase	Affymetrix [319769] (imputed)	N
1669	chr5	142086636	142086637	rs28480164	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	5q31.3	AC005592.3	rs28480164-G	NR	2E-8		0.0278791	[0.018-0.038] unit increase	Affymetrix [321114] (imputed)	N
1669	chr5	142086693	142086694	rs13154197	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	5q31.3	AC005592.3	rs13154197-G	NR	2E-15		0.0391075	[0.029-0.049] unit increase	Affymetrix [319769] (imputed)	N
1669	chr5	142086693	142086694	rs13154197	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	5q31.3	NR	rs13154197-G	0.09	4E-17		0.027	[0.021-0.033] unit increase	Affymetrix [2446094] (imputed)	N
1669	chr5	142086693	142086694	rs13154197	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	5q31.3	NR	rs13154197-G	0.09	5E-8				Affymetrix [2446094] (imputed)	N
1669	chr5	142087098	142087099	rs7723488	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	5q31.3	AC005592.3	rs7723488-G	NR	2E-9		0.0308435	[0.021-0.041] unit decrease	Affymetrix [321788] (imputed)	N
1669	chr5	142088341	142088342	rs2108864	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	5q31.3	NR	rs2108864-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1669	chr5	142095249	142095250	rs17099388	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	5q31.3	NR	rs17099388-A	0.0344	4E-7	(Trans/cis-18:2, EA)	0.0127	[0.0078-0.0176] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1669	chr5	142095951	142095952	rs6890562	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	5q31.3	AC005592.3	rs6890562-T	NR	1E-8		0.0487985	[0.032-0.066] unit increase	Affymetrix [319769] (imputed)	N
1669	chr5	142095951	142095952	rs6890562	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	5q31.3	NR	rs6890562-A	0.9696	6E-7	(Trans/cis-18:2, EA)	0.0145	[0.0088-0.0202] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1669	chr5	142095966	142095967	rs6895040	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	5q31.3	AC005592.3	rs6895040-C	NR	7E-9		0.0493748	[0.033-0.066] unit increase	Affymetrix [319769] (imputed)	N
1669	chr5	142116463	142116464	rs115489684	30487263	Pollack S	2018-11-28	Diabetes	Multiethnic Genome-wide Association Study of Diabetic Retinopathy using Liability Threshold Modeling of Duration of Diabetes and Glycemic Control.	Diabetic retinopathy (all NPDR and PDR)	1,079 European ancestry cases, 1,970 European ancestry controls, 911 African American cases, 941 African American controls	7,178 East Asian ancestry cases, 6,525 East Asian ancestry controls, 214 South East Asian ancestry cases, 557 South East Asian ancestry controls, 315 South Asian ancestry cases, 669 South Asian ancestry controls, 8,205 European ancestry cases, 7,713 European ancestry controls, 1,470 Hispanic cases, 1,240 Hispanic controls	5q31.3	NR	rs115489684-?	NR	2E-6	(AA)	1.754386	[NR]	Affymetrix, Illumina [NR] (imputed)	N
1669	chr5	142163127	142163128	rs77777956	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Systolic blood pressure (baseline)	5,304 African American individuals, 13,137 European ancestry individuals, 1,317 Hispanic individuals, 1,439 admixed individuals, 703 Chinese ancestry individuals	6,500 African American individuals, 2,451 European ancestry individuals, 2,869 Hispanic individuals	5q31.3	NR	rs77777956-A	0.0473	5E-7		1.7389	[1.06-2.42] mmHg decrease	Affymetrix, Illumina [NR] (imputed)	N
1670	chr5	142271611	142271612	rs191268231	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	5q31.3	ARHGAP26	rs191268231-A	0.9921	9E-6		0.2221	[0.12-0.32] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1670	chr5	142271611	142271612	rs191268231	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	5q31.3	ARHGAP26	rs191268231-A	0.9921	9E-6		0.2221	[0.12-0.32] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1670	chr5	142276783	142276784	rs76280036	33230199	Okada D	2020-11-23	J Hum Genet	Genome-wide association study of individual differences of human lymphocyte profiles using large-scale cytometry data.	B cell lymphocyte profile difference (7 days post influenza vaccination)	298 individuals	NA	5q31.3	NR	rs76280036-?	NR	4E-8			[NR]	NR [1665663]	N
1670	chr5	142284839	142284840	rs385670	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	5q31.3		rs385670-A	NR	1E-8		0.0145	[0.0096-0.0194] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
1670	chr5	142308526	142308527	rs9324898	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Small vessel stroke	333 Indian ancestry cases, 2,154 Indian ancestry controls	NA	5q31.3		rs9324898-?	NR	7E-6		1.1195501	[1.06574816744897-1.17606814110144]	Illumina [7827597] (imputed)	N
1670	chr5	142309294	142309295	rs3776398	33783297	Zai CC	2021-03-30	World J Biol Psychiatry	Genome-wide association study of suicidal behaviour severity in mood disorders.	Suicide attempt severity in mood disorders	719 European ancestry bipolar disorder cases, 2,787 European ancestry major depressive disorder cases	NA	5q31.3	ARHGAP26, LINC01844, AC005592.3	rs3776398-?	NR	3E-6		4.675	[NR] z score increase	Illumina [6737359] (imputed)	N
1671	chr5	142426237	142426238	rs4912892	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	5q31.3		rs4912892-?	NR	4E-14				NR [~ 8900000] (imputed)	N
1671	chr5	142441793	142441794	rs3776331	18759275	McArdle PF	2008-09-01	Arthritis Rheum	Association of a common nonsynonymous variant in GLUT9 with serum uric acid levels in old order amish.	Uric acid levels	408 Old Order Amish female individuals, 460 Old Order Amish male individuals	Framingham Heart Study (Sample size NR)	5q31.3	NR	rs3776331-?	NR	8E-6		0.3	[NR] mg/dl increase in uric acid levels	Affymetrix [361034]	N
1671	chr5	142455700	142455701	rs11739101	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	5q31.3	ARHGAP26	rs11739101-T	0.715377	8E-16		0.019940449	[0.015-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1671	chr5	142455700	142455701	rs11739101	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	5q31.3	ARHGAP26	rs11739101-T	0.71538	4E-15		0.01944229	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1671	chr5	142456485	142456486	rs35548690	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q31.3	NR	rs35548690-C	0.673441	4E-15				Affymetrix, Illumina [19872809] (imputed)	N
1671	chr5	142456485	142456486	rs35548690	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	5q31.3	NR	rs35548690-C	0.716797	2E-16		0.018813	[0.014-0.023] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
1671	chr5	142464437	142464438	rs145613835	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	5q31.3	ARHGAP26	rs145613835-?	NR	3E-9		0.03364248	[0.023-0.045] unit decrease	Illumina [27896057] (imputed)	N
1671	chr5	142470333	142470334	rs11167801	32755526	D'Urso S	2020-08-05	Twin Res Hum Genet	Septic Shock: A Genomewide Association Study and Polygenic Risk Score Analysis.	Septic shock resolution	459 European ancestry cases, 34 European ancestry controls	NA	5q31.3	ARHGAP26	rs11167801-C	0.91	9E-8		7.692308	NR	Illumina [7590211] (imputed)	N
1672	chr5	142494164	142494165	rs3776307	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	5q31.3	ARHGAP26	rs3776307-G	0.428663	1E-6		1.04	[1.02-1.05]	NR [8126035] (imputed)	N
1672	chr5	142501186	142501187	rs7705013	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	5q31.3	ARHGAP26	rs7705013-A	0.15904	4E-11		0.02003387	[0.014-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1672	chr5	142501186	142501187	rs7705013	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	5q31.3	ARHGAP26	rs7705013-A	0.159019	1E-9		0.01850333	[0.013-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1672	chr5	142507650	142507651	rs3776299	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	5q31.3	NR	rs3776299-G	0.549186	4E-10		0.0170666	[0.012-0.023] unit increase	Affymetrix [16580851] (imputed)	N
1672	chr5	142516896	142516897	rs246600	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	5q31.3	ARHGAP26	rs246600-T	0.4633	7E-17		0.043	[0.033-0.053] unit increase	Affymetrix [at least 7947838] (imputed)	N
1672	chr5	142516896	142516897	rs246600	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	5q31.3	ARHGAP26	rs246600-T	0.4635	2E-17		0.048	[0.037-0.059] unit increase	NR [8041861] (imputed)	N
1672	chr5	142516896	142516897	rs246600	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	5q31.3	ARHGAP26	rs246600-T	0.464	2E-17		0.048	[0.036-0.06] unit increase	Affymetrix [7947838] (imputed)	N
1672	chr5	142518674	142518675	rs12522841	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	5q31.3		rs12522841-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1672	chr5	142530385	142530386	rs72799981	31260374	Pedergnana V	2019-07-01	J Interferon Cytokine Res	Impact of IFNL4 Genetic Variants on Sustained Virologic Response and Viremia in Hepatitis C Virus Genotype 3 Patients.	Response to interferon treatment in hepatitis C virus genotype 3	717 European, Asian and unknown ancestry responders, 541 European, Asian and unknown ancestry non-responders	NA	5q31.3	NR	rs72799981-?	NR	1E-6		6.64	NR	Affymetrix [~ 18000000] (imputed)	N
1672	chr5	142532994	142532995	rs258801	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	5q31.3		rs258801-G	NR	1E-11		0.0136	[0.0097-0.0175] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
1672	chr5	142533343	142533344	rs121882	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	6-month creatinine clearance change response to tenofovir treatment in HIV infection (treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	5q31.3	NR	rs121882-?		6E-6				Illumina [~ 5140000] (imputed)	N
1672	chr5	142533656	142533657	rs114534	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	5q31.3	ARHGAP26	rs114534-G		2E-9		0.154	unit increase	Affymetrix [at least 2696785] (imputed)	N
1672	chr5	142537473	142537474	rs853170	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	5q31.3	ARHGAP26	rs853170-T	0.7398	6E-13		0.0155	[0.011-0.02] unit decrease	Affymetrix [18391927] (imputed)	N
1672	chr5	142547160	142547161	rs986564	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	5q31.3	NR	rs986564-T	0.073416	2E-10		0.023736	[0.016-0.031] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
1672	chr5	142554161	142554162	rs1010109	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	5q31.3		rs1010109-?	NR	6E-8				NR [~ 8900000] (imputed)	N
1672	chr5	142562665	142562666	rs7705069	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q31.3	NR	rs7705069-T	0.16346	7E-11				Affymetrix, Illumina [23114412] (imputed)	N
1672	chr5	142565825	142565826	rs3776232	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	5q31.3		rs3776232-G	NR	1E-9		0.0173	[0.012-0.023] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
1672	chr5	142570397	142570398	rs59900779	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	5q31.3	ARHGAP26	rs59900779-T	0.846207	1E-23		0.0256246	[0.021-0.031] unit increase	NR [13737936] (imputed)	N
1672	chr5	142577295	142577296	rs17100142	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	5q31.3		rs17100142-G	NR	5E-12		0.0177	[0.013-0.023] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
1672	chr5	142577295	142577296	rs17100142	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q31.3	NR	rs17100142-G	0.178957	5E-11				Affymetrix, Illumina [24649327] (imputed)	N
1672	chr5	142586693	142586694	rs2074636	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	5q31.3		rs2074636-?	NR	8E-26				NR [~ 8900000] (imputed)	N
1672	chr5	142586693	142586694	rs2074636	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	5q31.3		rs2074636-?	NR	2E-25		0.022456	[0.018-0.027] unit increase	Affymetrix [20259828] (imputed)	N
1672	chr5	142590232	142590233	rs3776221	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	5q31.3		rs3776221-?	NR	4E-19		0.0207568	[0.016-0.025] unit increase	Affymetrix [20259828] (imputed)	N
1672	chr5	142590232	142590233	rs3776221	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	5q31.3	ARHGAP26	rs3776221-A	0.74351	2E-9		0.0240784	[0.017-0.032] unit increase	NR [17166351] (imputed)	N
1672	chr5	142590232	142590233	rs3776221	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	5q31.3	ARHGAP26	rs3776221-A	0.742668	7E-7	(men)	0.029763	[0.018-0.041] unit increase	NR [17166351] (imputed)	N
1673	chr5	142609524	142609525	rs33384	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	5q31.3	ARHGAP26	rs33384-G	NR	7E-7		1.0603	NR	Affymetrix, Illumina [8278136] (imputed)	N
1673	chr5	142612487	142612488	rs258796	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	5q31.3		rs258796-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1673	chr5	142621071	142621072	rs258756	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	5q31.3		rs258756-C	0.564884	3E-9		0.01330901	[0.0089-0.0177] unit increase	Affymetrix [93095623] (imputed)	N
1673	chr5	142621071	142621072	rs258756	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	5q31.3		rs258756-C	0.5649	6E-9		0.013016294	[0.0086-0.0174] unit increase	Affymetrix [93095623] (imputed)	N
1673	chr5	142622668	142622669	rs1635474	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	5q31.3		rs1635474-G	0.327186	3E-11		0.015696537	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1673	chr5	142622668	142622669	rs1635474	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q31.3	NR	rs1635474-G	0.272136	2E-10				Affymetrix, Illumina [24653286] (imputed)	N
1673	chr5	142623470	142623471	rs258753	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	5q31.3		rs258753-T	0.320673	4E-11		0.015688183	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1673	chr5	142623470	142623471	rs258753	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	5q31.3	NR	rs258753-T	0.319452	1E-12		0.014204	[0.01-0.018] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
1673	chr5	142623470	142623471	rs258753	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q31.3	NR	rs258753-T	0.26772	3E-11				Affymetrix, Illumina [24558453] (imputed)	N
1673	chr5	142623470	142623471	rs258753	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	5q31.3	NR	rs258753-T	0.31939	7E-14		0.014904	[0.011-0.019] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
1673	chr5	142626259	142626260	rs11750560	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	5q31.3		rs11750560-?	NR	7E-14				NR [~ 8900000] (imputed)	N
1673	chr5	142634707	142634708	rs864354	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	5q31.3		rs864354-?	NR	9E-12				NR [~ 8900000] (imputed)	N
1673	chr5	142636789	142636790	rs853175	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5q31.3		rs853175-?	NR	2E-22				NR [~ 8900000] (imputed)	N
1673	chr5	142640202	142640202	rs199699215	32724131	Li QS	2020-07-28	Sci Rep	Genome-wide association study and polygenic risk score analysis of esketamine treatment response.	Response to esketamine in treatment resistant depression	255 European ancestry individuals	NA	5q31.3	NR	rs199699215-?		9E-6		25.1097	[14.14-36.08] unit decrease	NR [NR] (imputed)	N
1673	chr5	142650403	142650404	rs174048	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	5q31.3	ARHGAP26, NR3C1	rs174048-C	0.16	6E-11	(EA)	1.07	[1.05-1.09]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1673	chr5	142650403	142650404	rs174048	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	5q31.3	ARHGAP26, NR3C1	rs174048-C	0.16	1E-11		1.07	[1.05-1.09]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1673	chr5	142652360	142652361	rs258763	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	5q31.3	NR3C1	rs258763-T	NR	5E-8		0.0168999	[0.011-0.023] unit decrease	Affymetrix [323123] (imputed)	N
1673	chr5	142658155	142658156	rs6191	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	5q31.3	NR3C1, ARHGAP26, ARHGAP26-IT1	rs6191-A	NR	8E-6	(sleep onset, weekdays)	0.1867	[0.1-0.27] unit decrease	Affymetrix [7141204] (imputed)	N
1673	chr5	142676403	142676404	rs258814	33693626	Jamieson SE	2021-03-09	Clin Infect Dis	Common and rare genetic variants that could contribute to severe otitis media in an Australian Aboriginal population.	Otitis media	21 Martu ancestry cases, 370 Martu ancestry controls	NA	5q31.3		rs258814-G	0.32	4E-6				Illumina [6724284] (imputed)	N
1673	chr5	142717725	142717726	rs2398629	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	5q31.3	NR3C1	rs2398629-C	0.143413	2E-11		0.021634158	[0.015-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
1673	chr5	142717725	142717726	rs2398629	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	5q31.3	NR3C1	rs2398629-C	0.143429	7E-13		0.023238083	[0.017-0.03] unit increase	Affymetrix [93095623] (imputed)	N
1673	chr5	142727192	142727193	rs6877893	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	5q31.3	NR	rs6877893-?	NR	9E-9				Affymetrix [~ 8270000] (imputed)	N
1674	chr5	142756003	142756004	rs2963155	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	5q31.3	NR	rs2963155-G	0.2523	7E-6	(EA)	0.0339	[0.019-0.049] unit decrease	Illumina [~ 11800000] (imputed)	N
1674	chr5	142785973	142785973	rs367680772	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	5q31.3	NR3C1	rs367680772-CA	0.7538	7E-12		0.0159	[0.011-0.02] unit decrease	Affymetrix [18391927] (imputed)	N
1674	chr5	142790751	142790752	rs11747997	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	5q31.3		rs11747997-C	NR	1E-13		0.0119	[0.0088-0.015] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1674	chr5	142792649	142792650	rs7701443	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	5q31.3	NR3C1	rs7701443-G	NR	6E-9		0.0180904	[0.012-0.024] unit decrease	Affymetrix [323123] (imputed)	N
1674	chr5	142798587	142798588	rs72802806	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	5q31.3	NR	rs72802806-G	0.769853	9E-9		0.00565119	[0.0037-0.0076] unit increase	Affymetrix [16582909] (imputed)	N
1674	chr5	142798587	142798588	rs72802806	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	5q31.3	NR	rs72802806-G	0.769853	2E-6		0.00519222	[0.003-0.0074] unit increase	Affymetrix [16582965] (imputed)	N
1674	chr5	142803031	142803032	rs72802813	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	5q31.3	NR3C1	rs72802813-A	NR	1E-9		0.0241466	[0.016-0.032] unit increase	Affymetrix [323123] (imputed)	N
1674	chr5	142818122	142818123	rs6580277	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	5q31.3	NR3C1	rs6580277-G	0.237	2E-17		1.07	[1.05-1.09]	Illumina [34740186] (imputed)	N
1674	chr5	142818254	142818255	rs13361249	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q31.3	NR	rs13361249-T	0.01045	2E-8	(FNTA)	0.03409	NR unit increase	Illumina [1671387] (imputed)	N
1674	chr5	142819900	142819900	rs34632394	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	5q31.3	NR	rs34632394-CAT	0.537623	9E-10		0.00761219	[0.005-0.0102] unit increase	Affymetrix [16578495] (imputed)	N
1674	chr5	142819900	142819900	rs34632394	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	5q31.3	NR	rs34632394-CAT	0.5377419999999999	3E-10		0.0166873	[0.011-0.022] unit increase	Affymetrix [16580851] (imputed)	N
1674	chr5	142825004	142825005	rs146462216	32121467	Adewuyi EO	2020-02-29	Genes (Basel)	Shared Molecular Genetic Mechanisms Underlie Endometriosis and Migraine Comorbidity.	Endometriosis or migraine	17,054 European and Japanese ancestry endometriosis cases, 29,208 European ancestry migraine cases, 191,858 European and Japanese ancestry controls, 172,931 European ancestry controls	NA	5q31.3	NR	rs146462216-G	NR	8E-6	(fixed effect)	1.0416667	NR	NR [6904914] (imputed)	N
1674	chr5	142856119	142856120	rs28674017	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	5q31.3	CTD-2050E21.1	rs28674017-T	0.288697	5E-8		0.0549819	[0.035-0.075] unit decrease	Affymetrix [7288503] (imputed)	N
1675	chr5	142876708	142876709	rs17401208	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	5q31.3	CTD-2050E21.1, NR3C1, MIR5197	rs17401208-G	NR	4E-7	(mid-sleep time, weekdays)	0.4581	[0.28-0.64] unit increase	Affymetrix [7141204] (imputed)	N
1675	chr5	142881621	142881622	rs72804712	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Spatial processing	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	5q31.3	NR3C1	rs72804712-G	NR	4E-6		0.13927765	[0.082-0.196] unit decrease	Illumina [> 6200000] (imputed)	N
1675	chr5	142899800	142899801	rs12153243	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NA	5q31.3	intergenic	rs12153243-T	0.39	6E-6		1.05	[1.03-1.08]	Affymetrix, Illumina [~ 2300000] (imputed)	N
1675	chr5	142933350	142933351	rs188951355	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	5q31.3	Intergenic	rs188951355-T	NR	9E-7	(between families)	4.911	unit increase	Affymetrix [up to 15107142] (imputed)	N
1675	chr5	142938662	142938663	rs1037100	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	5q31.3	NR3C1, ARHGAP26	rs1037100-G	0.5053	3E-10		0.4002	[0.28-0.52] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1675	chr5	142970861	142970862	rs7729897	31006051	Kharazmi M	2019-04-20	Calcif Tissue Int	A Genome-Wide Association Study of Bisphosphonate-Associated Atypical Femoral Fracture.	Bisphosphonate-associated atypical femoral fracture	50 European ancestry cases, 1 Chilean ancestry case, 4,891 European ancestry controls	NA	5q31.3	intergenic	rs7729897-G	0.01	4E-10		10.27	[4.949-21.31]	Illumina [7585874] (imputed)	N
1675	chr5	142983716	142983717	rs1582888	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	5q31.3	CTB-57H20.1, MIR5197, NR3C1, HMHB1	rs1582888-G	NR	6E-6	(mid-sleep time, weekdays)	0.1936	[0.11-0.28] unit increase	Affymetrix [7141204] (imputed)	N
1675	chr5	142986270	142986271	rs246537	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Oscillospira)	1,068 Japanese ancestry individuals	NA	5q31.3	CTB-57H20.1	rs246537-T	0.11	1E-7	(male)	0.0565	[0.036-0.077] unit decrease	Illumina [6380737] (imputed)	N
1676	chr5	143003604	143003605	rs17100498	20195266	Adkins DE	2010-03-02	Mol Psychiatry	Genomewide pharmacogenomic study of metabolic side effects to antipsychotic drugs.	Response to antipsychotic treatment	421 European ancestry, 214 African American, and 103 cases	NA	5q31.3	intergenic	rs17100498-?	0.126	5E-7	(risperidone-hemoglobin A1c)			Affymetrix [492900]	N
1676	chr5	143046537	143046538	rs890710	28355232	Ward-Caviness CK	2017-03-29	PLoS One	A genome-wide trans-ethnic interaction study links the PIGR-FCAMR locus to coronary atherosclerosis via interactions between genetic variants and residential exposure to traffic.	Coronary atherosclerosis (increased number of diseased vessels) (traffic exposure interaction)	1,562 European ancestry individuals, 538 African American individuals	NA	5q31.3	NR	rs890710-?	NR	6E-6				Illumina [at least 756588]	N
1676	chr5	143059075	143059076	rs4912938	31564439	Fang H	2019-09-26	Am J Hum Genet	Harmonizing Genetic Ancestry and Self-identified Race/Ethnicity in Genome-wide Association Studies.	Height	up to 248,507 non-Hispanic white individuals, up to 68,155 non-Hispanic black individuals, up to 25,847 Hispanic individuals, up to 3,054 Asian ancestry individuals	NA	5q31.3	NR	rs4912938-T	NR	2E-8	(EA)	0.04	NR unit increase	Affymetrix [723305]	N
1676	chr5	143059075	143059076	rs4912938	31564439	Fang H	2019-09-26	Am J Hum Genet	Harmonizing Genetic Ancestry and Self-identified Race/Ethnicity in Genome-wide Association Studies.	Height	up to 248,507 non-Hispanic white individuals, up to 68,155 non-Hispanic black individuals, up to 25,847 Hispanic individuals, up to 3,054 Asian ancestry individuals	NA	5q31.3	NR	rs4912938-T	NR	1E-6				Affymetrix [723305]	N
1676	chr5	143073549	143073550	rs111942351	26977737	Cade BE	2016-03-15	Am J Respir Crit Care Med	Genetic Associations with Obstructive Sleep Apnea Traits in Hispanic/Latino Americans.	Obstructive sleep apnea trait (apnea hypopnea index)	12,558 Hispanic/Latin American individuals	214 Asian ancestry individuals, 1,183 African American individuals, 5,638 European ancestry individuals	5q31.3	CTB-57H20.1	rs111942351-A	0.981	4E-7	(Hispanic, males, BMI-adjusted)	0.363	[0.22-0.5] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1676	chr5	143078626	143078627	rs17413389	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	5q31.3	NR	rs17413389-G	NR	1E-10		0.0177	[0.012-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
1676	chr5	143079207	143079208	rs17413459	26584805	Dorajoo R	2015-11-19	Genes Nutr	A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.	Plasma omega-6 polyunsaturated fatty acid levels (dihomo-gamma-linolenic acid)	717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls	NA	5q31.3	NR	rs17413459-G	0.8904	4E-6		0.0994	[0.057-0.142] unit decrease	Illumina [up to 1980188] (imputed)	N
1676	chr5	143079207	143079208	rs17413459	26584805	Dorajoo R	2015-11-19	Genes Nutr	A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.	Delta-6 desaturase activity	717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls	NA	5q31.3	NR	rs17413459-G	0.8898	6E-6		0.1136	[0.044-0.183] unit decrease	Illumina [up to 1980188] (imputed)	N
1676	chr5	143085952	143085953	rs6862531	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	5q31.3		rs6862531-?	NR	9E-11		0.0166798	[0.011-0.022] unit decrease	Affymetrix [20259828] (imputed)	N
1676	chr5	143085952	143085953	rs6862531	26584805	Dorajoo R	2015-11-19	Genes Nutr	A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.	Plasma omega-6 polyunsaturated fatty acid levels (dihomo-gamma-linolenic acid)	717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls	NA	5q31.3	NR	rs6862531-G	0.8905	4E-6		0.0995	[0.057-0.142] unit decrease	Illumina [up to 1980188] (imputed)	N
1676	chr5	143085952	143085953	rs6862531	26584805	Dorajoo R	2015-11-19	Genes Nutr	A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.	Delta-6 desaturase activity	717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls	NA	5q31.3	NR	rs6862531-G	0.8898	6E-6		0.1137	[0.065-0.163] unit decrease	Illumina [up to 1980188] (imputed)	N
1676	chr5	143105803	143105804	rs112164488	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	5q31.3		rs112164488-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1677	chr5	143132453	143132454	rs17100783	31497858	Dumitrescu L	2019-09-01	Brain	Sex differences in the genetic predictors of Alzheimer's pathology.	Neurofibrillary tangles	3,275 European ancestry women	NA	5q31.3	MIR5197, HMHB1	rs17100783-C	0.227491	8E-6		0.425884	[0.24-0.61] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1677	chr5	143150613	143150614	rs12522465	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5q31.3		rs12522465-?	NR	1E-15				NR [~ 8900000] (imputed)	N
1677	chr5	143178449	143178450	rs775286610	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	5q31.3	CTB-57H20.1	rs775286610-C	0.9989	8E-6		1.9641	[1.1-2.82] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1677	chr5	143201704	143201705	rs918378	30160337	Asleh R	2018-08-30	Clin Transplant	Genome Wide Association Study Reveals Novel Genetic Loci Associated With Change in Renal Function in Heart Transplant Recipients.	Glomerular filtration rate change in heart transplantation	243 European ancestry individuals, 1 American Indian ancestry individual, 7 individuals	NA	5q31.3	HMHB1	rs918378-G	0.08	2E-6		14.18	[8.44-19.92] unit increase	Illumina [314903] (imputed)	N
1678	chr5	143273879	143273880	rs151055883	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Ovarian cancer (MTAG)	647 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	5q31.3	Intergenic	rs151055883-?		2E-6		1.08	[1.05-1.12]	Illumina [7645193] (imputed)	N
1678	chr5	143273879	143273880	rs151055883	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Ovarian cancer	647 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	5q31.3	Intergenic	rs151055883-?		6E-7		1.99	[1.52-2.60]	Illumina [7645193] (imputed)	N
1678	chr5	143280387	143280388	rs10515527	33332786	Zhang Y	2020-12-15	Spine (Phila Pa 1976)	Genome-Wide Association Analysis Across 16,956 Patients Identifies a Novel Genetic Association Between BMP6, NIPAL1, CNGA1 and Spondylosis.	Spondylosis	4,434 European ancestry cases, 9,416 European ancestry controls	NA	5q31.3	CTB-57H20.1	rs10515527-A	NR	8E-6		1.037	[1.021- 1.054]	Illumina [6740241] (imputed)	N
1678	chr5	143288469	143288470	rs13170657	33693626	Jamieson SE	2021-03-09	Clin Infect Dis	Common and rare genetic variants that could contribute to severe otitis media in an Australian Aboriginal population.	Otitis media	21 Martu ancestry cases, 370 Martu ancestry controls	NA	5q31.3		rs13170657-C	0.02	2E-6				Illumina [6724284] (imputed)	N
1678	chr5	143331399	143331400	rs116116673	28736931	Rotroff DM	2017-07-24	Clin Pharmacol Ther	Genetic Variants in HSD17B3, SMAD3, and IPO11 Impact Circulating Lipids in Response to Fenofibrate in Individuals With Type 2 Diabetes.	Triglyceride change in response to fenofibrate in statin-treated type 2 diabetes	781 European ancestry individuals, 138 African American ancestry individuals, 345 unknown ancestry individuals		5q31.3	intergenic	rs116116673-?	NR	3E-7	(AA)	0.147	unit increase	Affymetrix, Illumina [8129838] (imputed)	N
1678	chr5	143378451	143378452	rs13181480	33693626	Jamieson SE	2021-03-09	Clin Infect Dis	Common and rare genetic variants that could contribute to severe otitis media in an Australian Aboriginal population.	Otitis media	21 Martu ancestry cases, 370 Martu ancestry controls	NA	5q31.3		rs13181480-C	NR	2E-6				Illumina [6724284] (imputed)	N
1679	chr5	143411345	143411346	rs391760	24322204	Winham SJ	2013-12-10	Mol Psychiatry	Genome-wide association study of bipolar disorder accounting for effect of body mass index identifies a new risk allele in TCF7L2.	Bipolar disorder (body mass index interaction)	388 European ancestry cases, 1,020 European ancestry controls	NA	5q31.3	NR	rs391760-?	NR	2E-6				NR [up to 8466825] (imputed)	N
1679	chr5	143422944	143422945	rs409220	24322204	Winham SJ	2013-12-10	Mol Psychiatry	Genome-wide association study of bipolar disorder accounting for effect of body mass index identifies a new risk allele in TCF7L2.	Bipolar disorder (body mass index interaction)	388 European ancestry cases, 1,020 European ancestry controls	NA	5q31.3	NR	rs409220-?	NR	3E-6				NR [up to 8466825] (imputed)	N
1679	chr5	143444032	143444033	rs13164077	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	5q31.3	Intergenic	rs13164077-A	0.756	5E-6		0.051	NR unit increase	Illumina [NR] (imputed)	N
1679	chr5	143467717	143467718	rs11951400	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Neuroticism	170,911 European ancestry individuals	NA	5q31.3	NR	rs11951400-T	0.711	9E-6		0.016888926	[0.0094-0.0243] unit increase	Affymetrix [up to 6544775] (imputed)	N
1680	chr5	143528724	143528725	rs7710315	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5q31.3	KCTD16	rs7710315-?	NR	8E-6	(TAG 56:4)	0.20078282	[0.11-0.29] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1680	chr5	143528724	143528725	rs7710315	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5q31.3	KCTD16	rs7710315-?	NR	8E-6	(TAG 50:5)	0.2000525	[0.11-0.29] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1680	chr5	143528724	143528725	rs7710315	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5q31.3	KCTD16	rs7710315-?	NR	5E-6	(DAG 34:2)	0.20792201	[0.12-0.3] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1680	chr5	143540717	143540718	rs6864640	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	5q31.3	YIPF5, KCTD16	rs6864640-?		2E-13				Affymetrix, Illumina [NR] (imputed)	N
1681	chr5	143769613	143769614	rs10875606	33568662	Dashti HS	2021-02-10	Nat Commun	Genetic determinants of daytime napping and effects on cardiometabolic health.	Daytime nap	452,633 European ancestry individuals	541,333 European ancestry individuals	5q31.3	KCTD16	rs10875606-C		2E-14		0.007	[0.0052-0.0088] unit increase	Affymetrix [13304133] (imputed)	N
1682	chr5	143821335	143821336	rs10054473	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	5q31.3		rs10054473-?	NR	1E-7				NR [~ 8900000] (imputed)	N
1682	chr5	143889332	143889333	rs185177474	30940813	Kranzler HR	2019-04-02	Nat Commun	Genome-wide association study of alcohol consumption and use disorder in 274,424 individuals from multiple populations.	Alcohol use disorder (consumption score)	200,680 European American individuals, 56,495 African American individuals, 14,112 Latino American individuals, 1,366 East Asian American individuals, 189 South Asian American individuals	NA	5q31.3	KCTD16	rs185177474-A	0.031	2E-8	(EA)	0.0887	[0.058-0.12] unit increase	Affymetrix [up to 12500000] (imputed)	N
1683	chr5	143938664	143938665	rs165393	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	5q31.3	NR	rs165393-T	0.0	8E-7		2.09	[1.8-2.38]	Illumina [8468885] (imputed)	N
1684	chr5	144141554	144141555	rs4349753	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Photic sneeze reflex	32,446 European ancestry cases, 67,249 European ancestry controls	NA	5q31.3	KCTD16, PRELID2	rs4349753-?	NR	4E-9		1.0626993	[1.04-1.08]	Illumina [13729857] (imputed)	N
1684	chr5	144146741	144146742	rs166016	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	5q31.3		rs166016-C	NR	8E-6	(resting duration)	0.2162	[0.12-0.31] unit decrease	Affymetrix [7141204] (imputed)	N
1684	chr5	144176945	144176946	rs186464237	26423011	Wain LV	2015-09-27	Lancet Respir Med	Novel insights into the genetics of smoking behaviour, lung function, and chronic obstructive pulmonary disease (UK BiLEVE): a genetic association study in UK Biobank.	Lung function in never smokers (high FEV1 vs average FEV1)	4,902 European ancestry individuals with high FEV1 measurements, 9,827 European ancestry individuals with average FEV1 measurements	NA	5q31.3	KCTD16, PRELID2	rs186464237-T	0.008	2E-7		2.18	[1.627-2.919]	Affymetrix [28509962] (imputed)	N
1685	chr5	144226474	144226475	rs4913007	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	5q31.3		rs4913007-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1685	chr5	144279007	144279008	rs79031633	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Rheumatic fever	1,115 European ancestry cases, 88,076 European ancestry controls	NA	5q31.3	NR	rs79031633-?	NR	9E-6		6.6284	[0.5-12.76] unit decrease	Illumina [at least 560000] (imputed)	N
1686	chr5	144316671	144316672	rs78119163	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter alcoholic beverage consumption	336,448 European ancestry individuals	39,924 European ancestry individuals	5q31.3	KCTD16	rs78119163-A	0.8838	8E-8		0.0087	[0.0056-0.0118] unit increase	Affymetrix [~ 7740000] (imputed)	N
1686	chr5	144316671	144316672	rs78119163	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Alcohol consumption (drinks per week)	414,343 European ancestry individuals	NA	5q31.3	KCTD16	rs78119163-A	0.8827	4E-8		0.01904569	[0.012-0.026] unit increase	Affymetrix [11514936] (imputed)	N
1686	chr5	144351869	144351870	rs75788301	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Diastolic blood pressure change trajectory	5,304 African American individuals, 13,137 European ancestry individuals, 1,317 Hispanic individuals, 1,439 admixed individuals, 703 Chinese ancestry individuals	6,500 African American individuals, 2,451 European ancestry individuals, 2,869 Hispanic individuals	5q31.3	NR	rs75788301-A	0.0641	5E-7		0.6265	[0.38-0.87] mmHg decrease	Affymetrix, Illumina [NR] (imputed)	N
1686	chr5	144365313	144365314	rs35005720	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q31.3	NR	rs35005720-T	0.0122	9E-11	(S100A6)	0.1106	NR unit increase	Illumina [1671387] (imputed)	N
1686	chr5	144365313	144365314	rs35005720	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q31.3	NR	rs35005720-T	0.0122	8E-10	(FKBP1A)	0.02807	NR unit increase	Illumina [1671387] (imputed)	N
1686	chr5	144365313	144365314	rs35005720	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q31.3	NR	rs35005720-T	0.0122	6E-9	(SEPT7)	0.06078	NR unit increase	Illumina [1671387] (imputed)	N
1686	chr5	144365313	144365314	rs35005720	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q31.3	NR	rs35005720-T	0.0122	6E-16	(FLNA)	1.441	NR unit increase	Illumina [1671387] (imputed)	N
1686	chr5	144365313	144365314	rs35005720	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q31.3	NR	rs35005720-T	0.0122	6E-14	(TGFBI)	0.2274	NR unit increase	Illumina [1671387] (imputed)	N
1686	chr5	144365313	144365314	rs35005720	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q31.3	NR	rs35005720-T	0.0122	4E-9	(PARVA)	0.02542	NR unit increase	Illumina [1671387] (imputed)	N
1686	chr5	144365313	144365314	rs35005720	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q31.3	NR	rs35005720-T	0.0122	4E-11	(CNN3)	0.01733	NR unit increase	Illumina [1671387] (imputed)	N
1686	chr5	144365313	144365314	rs35005720	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q31.3	NR	rs35005720-T	0.0122	3E-9	(CAPN2)	0.04895	NR unit increase	Illumina [1671387] (imputed)	N
1686	chr5	144365313	144365314	rs35005720	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q31.3	NR	rs35005720-T	0.0122	3E-8	(CLIC4)	0.02711	NR unit increase	Illumina [1671387] (imputed)	N
1686	chr5	144365313	144365314	rs35005720	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q31.3	NR	rs35005720-T	0.0122	2E-8	(RSU1)	0.04547	NR unit increase	Illumina [1671387] (imputed)	N
1686	chr5	144365313	144365314	rs35005720	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q31.3	NR	rs35005720-T	0.0122	2E-8	(RBP1)	0.05476	NR unit increase	Illumina [1671387] (imputed)	N
1686	chr5	144365313	144365314	rs35005720	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q31.3	NR	rs35005720-T	0.0122	2E-8	(CLIC1)	0.1583	NR unit increase	Illumina [1671387] (imputed)	N
1686	chr5	144365313	144365314	rs35005720	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q31.3	NR	rs35005720-T	0.0122	1E-9	(CNN2)	0.01674	NR unit increase	Illumina [1671387] (imputed)	N
1686	chr5	144365313	144365314	rs35005720	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q31.3	NR	rs35005720-T	0.0122	1E-9	(CAPNS1)	0.02563	NR unit increase	Illumina [1671387] (imputed)	N
1686	chr5	144365313	144365314	rs35005720	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q31.3	NR	rs35005720-T	0.0122	1E-15	(CKB)	0.03914	NR unit increase	Illumina [1671387] (imputed)	N
1686	chr5	144365313	144365314	rs35005720	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q31.3	NR	rs35005720-T	0.0122	1E-10	(TAGLN)	0.3903	NR unit increase	Illumina [1671387] (imputed)	N
1686	chr5	144412334	144412335	rs12655091	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	5q31.3	NR	rs12655091-A	0.53	2E-8		0.00740093	[0.0048-0.01] unit decrease	NR [~ 9732723] (imputed)	N
1686	chr5	144412334	144412335	rs12655091	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week)	up to 941,280 European ancestry individuals	NA	5q31.3	NR	rs12655091-A	0.53	1E-8		0.008312109	[0.0054-0.0112] unit decrease	NR [~ 10000000] (imputed)	N
1687	chr5	144446954	144446955	rs11167891	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	5q31.3	Intergenic	rs11167891-T	0.8445	2E-10		0.0171	[0.012-0.022] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1687	chr5	144452535	144452536	rs17102664	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Diastolic blood pressure change trajectory	5,304 African American individuals, 13,137 European ancestry individuals, 1,317 Hispanic individuals, 1,439 admixed individuals, 703 Chinese ancestry individuals	6,500 African American individuals, 2,451 European ancestry individuals, 2,869 Hispanic individuals	5q31.3	NR	rs17102664-A	0.8875	5E-7		0.4238	[0.26-0.59] mmHg increase	Affymetrix, Illumina [NR] (imputed)	N
1687	chr5	144455284	144455285	rs34068300	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	5q31.3	NR	rs34068300-G	0.466	8E-7	(IFNalpha_CXCL10_of_CD4p_T)			Illumina [5084123] (imputed)	N
1687	chr5	144479770	144479771	rs72806416	34748635	Miranda JP	2021-11-08	J Clin Endocrinol Metab	Genome-Wide Association Study And Polygenic Risk Scores Of Serum Dheas Levels In A Chilean Children Cohort.	DHEAS levels	788 Hispanic or Latin American individuals	NA	5q32	PRELID2	rs72806416-G	0.069	9E-6		0.11	unit decrease	Illumina [5510858] (imputed)	N
1687	chr5	144485977	144485978	rs13160735	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	5q32		rs13160735-?	NR	6E-10				NR [~ 8900000] (imputed)	N
1687	chr5	144487288	144487289	rs2190787	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota (alpha diversity)	858 Metropolitan French ancestry individuals	NA	5q32	NR	rs2190787-?	NR	3E-6	(Richness)	13.1767	[7.67-18.68] unit decrease	Illumina [5293637] (imputed)	N
1687	chr5	144493177	144493178	rs115316316	28203683	Heit JA	2017-02-16	Thromb Haemost	Identification of unique venous thromboembolism-susceptibility variants in African-Americans.	Venous thromboembolism adjusted for sickle cell variant rs77121243-T	393 African American cases, 4,941 African American controls.	NR	5q32	LOC100132712	rs115316316-A	0.0164	6E-6		2.848	[1.812-4.478]	Affymetrix, Illumina [14074516] (imputed)	N
1687	chr5	144501146	144501147	rs76957426	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	5q32		rs76957426-T	NR	2E-8		0.0133	[0.0086-0.018] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
1687	chr5	144501146	144501147	rs76957426	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	5q32	PRELID2	rs76957426-C	0.70358	2E-8		0.0122169	[0.0079-0.0165] unit decrease	Affymetrix [NR] (imputed)	N
1687	chr5	144528454	144528455	rs1981626	24529757	Xie T	2014-01-17	Neurobiol Aging	Genome-wide association study combining pathway analysis for typical sporadic amyotrophic lateral sclerosis in Chinese Han populations.	Amyotrophic lateral sclerosis (sporadic)	250 Han Chinese ancestry cases, 250 Han Chinese ancestry controls	NA	5q32	KCTD16	rs1981626-?		8E-6				Illumina [859311]	N
1687	chr5	144551332	144551333	rs2400171	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	5q32	Intergenic	rs2400171-T	0.6891	3E-11	(MTAG)	0.0128	[0.0091-0.0165] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1687	chr5	144551332	144551333	rs2400171	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	5q32	Intergenic	rs2400171-T	0.6891	2E-12		0.0148	[0.011-0.019] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1688	chr5	144585846	144585847	rs17405194	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	IgD- CD38dim B cell %lymphocyte	3,656 Sardinian (founder/genetic isolate) ancestry individuals	NA	5q32		rs17405194-T	0.01493	1E-8		0.5862	[0.39-0.79] unit increase	Illumina [18238287] (imputed)	N
1688	chr5	144603853	144603854	rs75220716	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q32	NR	rs75220716-T	0.0122	7E-10	(AGT)	0.09231	NR unit increase	Illumina [1671387] (imputed)	N
1688	chr5	144608339	144608340	rs17405603	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	IgD+ B cell %B cell	3,658 Sardinian (founder/genetic isolate) ancestry individuals	NA	5q32		rs17405603-T	0.28362	2E-8		0.1542	[0.1-0.21] unit increase	Illumina [18238340] (imputed)	N
1688	chr5	144623436	144623437	rs13155259	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	5q32	NA	rs13155259-A	0.6681	2E-10		0.0114	[0.0079-0.0149] unit decrease	NR [~ 27400000] (imputed)	N
1689	chr5	144736244	144736245	rs2112743	25387708	Vaidyanathan U	2014-12-01	Psychophysiology	Heritability and molecular genetic basis of acoustic startle eye blink and affectively modulated startle response: a genome-wide association study.	Acoustic startle blink response	3,323 European ancestry twins and their parents	NA	5q32	intergenic	rs2112743-?	NR	9E-6	(Aversive Difference Startle Scores)	0.087	[0.048-0.126] unit increase	Illumina [527829]	N
1689	chr5	144748098	144748099	rs574519712	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body fat mass	3,399 whole genome sequenced individuals, 11,802 European ancestry individuals	10,670 European ancestry individuals	5q32	CTC-806A22.1	rs574519712-C	0.9989	9E-6		1.2998	[0.72-1.87] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1689	chr5	144759199	144759200	rs76661052	31095341	Kerns SL	2019-05-16	J Natl Cancer Inst	Radiogenomics Consortium Genome-Wide Association Study Meta-analysis of Late Toxicity after Prostate Cancer Radiotherapy.	Toxicity response to radiotherapy in prostate cancer (hematuria) (time to event)	3,619 European ancestry individuals	538 Japanese ancestry individuals	5q32	NR	rs76661052-?	0.03	3E-7	(EA)	2.33	[1.68-3.22]	Affymetrix, Illumina [~ 6000000] (imputed)	N
1689	chr5	144776256	144776257	rs115857740	31712607	Nudel R	2019-11-11	Transl Psychiatry	A large-scale genomic investigation of susceptibility to infection and its association with mental disorders in the Danish population.	Hospital contact for infections	21,728 Danish ancestry cases with psychiatric disorders, 6,744 Danish ancestry cases, 24,161 Danish ancestry controls with psychiatric disorders, 12,901 Danish ancestry controls	NA	5q32		rs115857740-T	NR	5E-6		1.1930327	[1.12-1.27]	Illumina [11600722] (imputed)	N
1690	chr5	144910865	144910866	rs115472382	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q32	NR	rs115472382-C	0.01568	3E-8	(EPHX1)	4.053	NR unit increase	Illumina [1671387] (imputed)	N
1690	chr5	144912335	144912336	rs77165097	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q32	NR	rs77165097-C	0.01568	2E-8	(ANP32A)	0.07621	NR unit increase	Illumina [1671387] (imputed)	N
1690	chr5	144943204	144943205	rs6866539	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5q32	LOC643226	rs6866539-?	NR	4E-6	(LPE 18:2)	0.24412023	[0.14-0.35] unit increase	Affymetrix [at least 2500000] (imputed)	N
1691	chr5	144972210	144972211	rs10062780	27846281	Galesloot TE	2016-11-15	PLoS One	Meta-GWAS and Meta-Analysis of Exome Array Studies Do Not Reveal Genetic Determinants of Serum Hepcidin.	Hepcidin/ferritin ratio	1495 European ancestry individuals without iron deficiency or clinical inflammation, 324 European ancestry individuals, 1206 Val Borbera (founder/genetic isolated) individuals without iron deficiency or clinical inflammation, 274 Val Borbera (founder/genetic isolated) individuals, 2,695 European ancestry individuals without iron deficiency or clinical inflammation, 207 individuals	NA	5q32	PRELID2	rs10062780-T	0.0931	8E-8	(Subset)	0.191	[0.12-0.26] unit decrease	Illumina [up to 38043574] (imputed)	N
1691	chr5	145007638	145007639	rs56281245	27846281	Galesloot TE	2016-11-15	PLoS One	Meta-GWAS and Meta-Analysis of Exome Array Studies Do Not Reveal Genetic Determinants of Serum Hepcidin.	Hepcidin levels	1495 European ancestry individuals without iron deficiency or clinical inflammation, 324 European ancestry individuals, 1206 Val Borbera (founder/genetic isolated) individuals without iron deficiency or clinical inflammation, 274 Val Borbera (founder/genetic isolated) individuals, 2,695 European ancestry individuals without iron deficiency or clinical inflammation, 207 individuals	1,018 European ancestry individuals, 2,876 individuals	5q32	PRELID2	rs56281245-T	0.95	7E-7	(Subset)	0.26	[0.16-0.36] unit increase	Illumina [up to 38043574] (imputed)	N
1691	chr5	145038830	145038831	rs10515552	22367966	Lin X	2012-02-24	Hum Mol Genet	Genome-wide association study identifies novel loci associated with serum level of vitamin B12 in Chinese men.	Vitamin B12 levels	1,999 Han Chinese ancestry individuals	1,496 Chinese ancestry individuals	5q32	intergenic	rs10515552-?	NR	4E-8		43.93	[28.29-59.57] pg/ml increase	Illumina [1940245] (imputed)	N
1692	chr5	145126166	145126167	rs2400200	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Rheumatic fever	1,115 European ancestry cases, 88,076 European ancestry controls	NA	5q32	NR	rs2400200-?	NR	6E-6		0.3157	[0.17-0.46] unit decrease	Illumina [at least 560000] (imputed)	N
1692	chr5	145209034	145209035	rs4529254	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	5q32	NR	rs4529254-G	0.695	3E-8		0.0064701	[0.0042-0.0088] unit increase	NR [9732723] (imputed)	N
1692	chr5	145212780	145212781	rs371991	30715261	Brouwer WP	2019-02-02	Clin Infect Dis	Genome Wide Association Study Identifies Genetic Variants Associated With Early And Sustained Response To (Peg)Interferon In Chronic Hepatitis B Patients: The GIANT-B Study.	Response to (pegylated) interferon in HBeAG-positive hepatitis B	121 Asian, European, African and other ancestry cases, 388 Asian, European, African and other ancestry controls	NA	5q32	PRELID2, YIPF5, KCTD16, GRXCR2, SH3RF2, PLAC8L1	rs371991-G	0.5519	3E-6		0.7406	[0.43-1.05] unit decrease	Illumina [8102086] (imputed)	N
1693	chr5	145250339	145250340	rs381084	33713768	Akenroye AT	2021-03-10	J Allergy Clin Immunol	Genome-wide Association study of Asthma, Total IgE, and Lung function in a Cohort of Peruvian Children.	Serum IgE levels	727 Peruvian individuals	NA	5q32		rs381084-?	NR	8E-6		0.191	unit decrease	Illumina [NR] (imputed)	N
1694	chr5	145374882	145374883	rs115728361	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q32	NR	rs115728361-G	0.0122	2E-9	(DIABLO)	0.01242	NR unit increase	Illumina [1671387] (imputed)	N
1694	chr5	145388179	145388180	rs7725038	27236921	Rautanen A	2016-06-02	Am J Hum Genet	Polymorphism in a lincRNA Associates with a Doubled Risk of Pneumococcal Bacteremia in Kenyan Children.	Bacteremia	1,536 African ancestry cases, 2,677 African ancestry controls	434 African ancestry cases, 1,336 African ancestry controls	5q32	SH3RF2	rs7725038-?	NR	4E-6		1.3	[NR]	Affymetrix [up to 10996499] (imputed)	N
1694	chr5	145453926	145453927	rs7725078	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	5q32	Intergenic	rs7725078-A	0.3328	4E-10	(MTAG)	0.0087	[0.006-0.0114] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1695	chr5	145538514	145538515	rs2962508	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	5q32	Intergenic	rs2962508-T	NR	4E-8	(between families)	5.499	unit increase	Affymetrix [up to 15107142] (imputed)	N
1695	chr5	145582531	145582532	rs1506431	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	5q32	Intergenic	rs1506431-C	0.2785	1E-9	(MTAG)	0.0112	[0.0077-0.0147] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1696	chr5	145658067	145658068	rs2939523	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	5q32	RBM27	rs2939523-A	0.622532	7E-9		0.013298794	[0.0088-0.0178] unit increase	Affymetrix [93095623] (imputed)	N
1696	chr5	145658067	145658068	rs2939523	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	5q32	NR	rs2939523-C	0.375454	2E-10		0.012583	[0.0087-0.0164] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
1696	chr5	145698018	145698020	rs530929399	33602968	Skuladottir AT	2021-02-18	Sci Rep	A meta-analysis uncovers the first sequence variant conferring risk of Bell's palsy.	Bell's palsy	4,714 European ancestry cases, 1,011,520 European ancestry controls	NA	5q32	intergenic	rs530929399-?	0.3208	5E-6		0.88843	NR	Affymetrix, Illumina [30341632] (imputed)	N
1696	chr5	145705668	145705669	rs35192107	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	5q32		rs35192107-T	0.7621	4E-8		0.0091	[0.0058-0.0124] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1696	chr5	145710360	145710361	rs1432952	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	5q32		rs1432952-?	NR	2E-12				NR [~ 8900000] (imputed)	N
1696	chr5	145716947	145716948	rs371671263	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	5q32	NR	rs371671263-?	NR	3E-6		4.674	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1696	chr5	145733632	145733633	rs11748968	30450575	Hojfeldt SG	2018-11-18	Br J Haematol	Genetic predisposition to PEG-asparaginase hypersensitivity in children treated according to NOPHO ALL2008.	PEG-asparaginase hypersensitivity without enzyme activity in childhood acute lymphoblastic leukaemia	59 European ancestry cases, 772 European ancestry controls	NA	5q32	POU4F3	rs11748968-C	NR	3E-6		3.69	[2.13-6.4]	Illumina [NR]	N
1696	chr5	145749361	145749362	rs28559912	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Pars orbitalis volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	5q32	NR	rs28559912-?		9E-6				Illumina [4322238] (imputed)	N
1696	chr5	145749534	145749535	rs7718446	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine without aura	7,107 European ancestry cases, 69,427 European ancestry controls	NA	5q32	intergenic	rs7718446-?	0.72	4E-6		1.11	[1.06-1.16]	Affymetrix, Illumina [~ 2300000] (imputed)	N
1697	chr5	145787360	145787361	rs9325007	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	5q32	NR	rs9325007-?	NR	8E-7				Affymetrix [NR]	N
1697	chr5	145820103	145820104	rs10072948	31123309	Rayner C	2019-05-23	Transl Psychiatry	A genome-wide association meta-analysis of prognostic outcomes following cognitive behavioural therapy in individuals with anxiety and depressive disorders.	Response to cognitive-behavioural therapy in anxiety disorder	920 child cases	NA	5q32	GPR151, POU4F3, PPP2R2B, RBM27, TCERG1	rs10072948-G	0.19	4E-6		0.51	[0.29-0.73] unit decrease	Illumina [at least 4710000] (imputed)	N
1698	chr5	145895393	145895394	rs114285050	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	5q32		rs114285050-A	NR	3E-8		0.0628	[0.041-0.085] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1698	chr5	145895393	145895394	rs114285050	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	5q32		rs114285050-A	NR	2E-8		0.0718	[0.047-0.097] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1698	chr5	145895393	145895394	rs114285050	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Body mass index	457,756 European ancestry individuals	NA	5q32		rs114285050-?	NR	1E-8		0.0606613	[0.04-0.082] unit decrease	NR [9800000] (imputed)	N
1698	chr5	145895393	145895394	rs114285050	34210852	Akbari P	2021-07-01	Science	Sequencing of 640,000 exomes identifies <i>GPR75</i> variants associated with protection from obesity.	Body mass index	549,780 European ancestry individuals, 95,846 admixed American ancestry individuals	NA	5q32		rs114285050-?	NR	2E-8		0.05	[0.04-0.07] unit decrease	Illumina [NR]	N
1698	chr5	145895393	145895394	rs114285050	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	5q32	NR	rs114285050-?	NR	4E-9				Affymetrix [~ 8270000] (imputed)	N
1698	chr5	145895393	145895394	rs114285050	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	5q32		rs114285050-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1698	chr5	145895393	145895394	rs114285050	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	5q32	NA	rs114285050-A	0.0078	4E-9		0.0636	[0.042-0.085] unit decrease	NR [~ 27400000] (imputed)	N
1698	chr5	145927687	145927688	rs12516990	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	5q32		rs12516990-C	0.2106	8E-9		0.0099	[0.0066-0.0132] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1698	chr5	145927687	145927688	rs12516990	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	5q32	Intergenic	rs12516990-C	0.2106	2E-8	(MTAG)	0.009	[0.0059-0.0121] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1698	chr5	145940249	145940250	rs116090962	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q32	NR	rs116090962-A	0.01394	4E-9	(ORM1)	0.8219	NR unit increase	Illumina [1671387] (imputed)	N
1698	chr5	145958466	145958467	rs62375660	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 17, height of vermillion upper lip)	2,187 European ancestry individuals	NA	5q32	NR	rs62375660-T	0.03327	3E-6		0.3965	[0.23-0.56] unit decrease	Illumina [10677593] (imputed)	N
1699	chr5	146029094	146029095	rs184460994	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Chickenpox	107,769 European ancestry cases, 15,982 European ancestry controls	NA	5q32	NR	rs184460994-?	NR	7E-6		0.3347	[0.19-0.48] unit decrease	Illumina [at least 560000] (imputed)	N
1699	chr5	146118961	146118962	rs11167944	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	5q32	NR	rs11167944-A	0.277	2E-6	(IFNalpha_ABC_of_CD20p)			Illumina [5084123] (imputed)	N
1699	chr5	146135208	146135209	rs76752255	33426524	Ramanan VK	2020-09-26	Brain Commun	Variants in <i>PPP2R2B</i> and <i>IGF2BP3</i> are associated with higher tau deposition.	Tau burden	754 European ancestry individuals	NA	5q32	PPP2R2B	rs76752255-C	0.015	1E-8		0.2	NR unit increase	Illumina [6417232] (imputed)	N
1700	chr5	146147419	146147420	rs142314071	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	57 Italian ancestry cases, 931 Italian ancestry controls	NA	5q32	PPP2R2B	rs142314071-T	0.007519	6E-7		12.02	[4.524-31.94]	Illumina [4425173] (imputed)	N
1700	chr5	146147419	146147420	rs142314071	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	286 European ancestry cases, 2,652 European ancestry controls, 76 Han Chinese ancestry cases, 889 Han Chinese ancestry controls, 46 South Asian ancestry cases, 501 South Asian ancestry controls, 683 Turkish ancestry cases, 1,721 Turkish ancestry controls	NA	5q32	PPP2R2B	rs142314071-T	NR	6E-7		12.02	NR	Illumina [up to 4495750] (imputed)	N
1700	chr5	146225243	146225244	rs609412	23453885	Smoller JW	2013-02-27	Lancet	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NA	5q32	PPP2R2B	rs609412-A		2E-6	(Modelling analysis)	1.07	[1.04-1.10]	NR [1252901] (imputed)	N
1700	chr5	146235632	146235633	rs9686807	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	5q32		rs9686807-G	0.22	6E-10		6.18	z score increase	Affymetrix [9061022] (imputed)	N
1700	chr5	146245761	146245762	rs319227	34380480	Liu J	2021-08-12	BMC Med	Genome-wide association study followed by trans-ancestry meta-analysis identify 17 new risk loci for schizophrenia.	Schizophrenia	26,271 East Asian ancestry cases, 40,071 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	5q32		rs319227-A	NR	6E-9		1.05		Illumina [NR] (imputed)	N
1700	chr5	146260863	146260864	rs6580443	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	5q32	NR	rs6580443-G	0.228	6E-6	(IFNgamma_ABC_of_CD20p)			Illumina [5084123] (imputed)	N
1700	chr5	146262488	146262489	rs319204	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	5q32	PPP2R2B	rs319204-T	NR	5E-6		1.047	[1.03-1.07]	Illumina [6627481] (imputed)	N
1700	chr5	146262488	146262489	rs319204	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	5q32	intergenic	rs319204-T	NR	4E-7		1.051	[1.03-1.07]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1701	chr5	146278890	146278891	rs4495234	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	5q32	PPP2R2B	rs4495234-?		4E-8				NR [6786993] (imputed)	N
1701	chr5	146320822	146320823	rs1864982	19581569	Treutlein J	2009-07-01	Arch Gen Psychiatry	Genome-wide association study of alcohol dependence.	Alcohol dependence	476 European ancestry cases, 1,358 European ancestry controls	1,024 European ancestry cases, 996 European ancestry controls	5q32	PPP2R2B	rs1864982-A	0.13	3E-6		1.36	[1.20-1.55]	Illumina [524396]	N
1702	chr5	146415215	146415216	rs9325032	17903297	Seshadri S	2007-09-19	BMC Med Genet	Genetic correlates of brain aging on MRI and cognitive test measures: a genome-wide association and linkage analysis in the Framingham Study.	Cognitive test performance	694 European ancestry individuals	NA	5q32	intergenic	rs9325032-?	NR	3E-6	(F2)			Affymetrix [70897]	N
1702	chr5	146435162	146435163	rs11958187	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	5q32	NR	rs11958187-?	NR	9E-9		1.05454	[1.04-1.07]	Affymetrix, Illumina [12447948] (imputed)	N
1702	chr5	146436522	146436523	rs11167957	31972866	Nagel M	2020-01-23	Acta Psychiatr Scand	Genome-wide association study of the sensitivity to environmental stress and adversity (SESA) neuroticism cluster.	Sensitivity to environmental stress and adversity	351,827 European ancestry individuals	NA	5q32	NR	rs11167957-C	NR	4E-8		0.01324	NR unit decrease	NR [7259579]	N
1702	chr5	146436522	146436523	rs11167957	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	5q32	Intergenic	rs11167957-C	0.3753	4E-8		0.011	[0.0071-0.0149] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1702	chr5	146439806	146439807	rs6896858	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	5q32	Intergenic	rs6896858-C	0.6257	3E-8	(MTAG)	0.0102	[0.0067-0.0137] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1702	chr5	146441645	146441646	rs1480152	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	5q32		rs1480152-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1702	chr5	146447594	146447595	rs372085168	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	5q32	NR	rs372085168-?	NR	6E-6		0.012255	[0.0069-0.0176] unit increase	Affymetrix [805426] (imputed)	N
1702	chr5	146456872	146456873	rs180824717	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	5q32	PPP2R2B, STK32A, PPP2R2B-IT1	rs180824717-C	NR	7E-6	(sleep onset irregularity, weekdays)	0.1541	[0.087-0.221] unit increase	Affymetrix [7141204] (imputed)	N
1702	chr5	146460690	146460691	rs17524553	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in lean individuals	up to 5,529 European ancestry male individuals, up to 9,753 European ancestry female individuals	NA	5q32	PPP2R2B	rs17524553-T	0.89	4E-6	(men)	0.15	[0.085-0.215] kg/m2 decrease	Affymetrix, Illumina [at least 188473] (imputed)	N
1702	chr5	146490227	146490228	rs114588192	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Granulocyte-colony stimulating factor levels	7,904 Finnish ancestry individuals	NA	5q32	NR	rs114588192-C		8E-6		0.2872	[0.16-0.41] SD units decrease	NR [10700000] (imputed)	N
1703	chr5	146541630	146541631	rs17581504	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	5q32	STK32A	rs17581504-G	0.250619862567294	5E-6	(G_Ruminococcus_RNT)	0.122848	[0.07-0.176] unit increase	Illumina [7711310] (imputed)	N
1703	chr5	146629733	146629734	rs11167966	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5q32	DPYSL3	rs11167966-?	NR	5E-6	(isocitrate)	0.19381507	[0.11-0.28] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1704	chr5	146675132	146675133	rs13170855	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Lateral ventricle temporal horn volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	5q32	STK32A	rs13170855-?		5E-6				Illumina [4322238] (imputed)	N
1704	chr5	146687358	146687359	rs6894154	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5q32	DPYSL3	rs6894154-?	NR	6E-6	(proline)	0.19694181	[0.11-0.28] unit increase	Affymetrix [at least 2500000] (imputed)	N
1704	chr5	146690368	146690369	rs918799	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5q32	DPYSL3	rs918799-?	NR	6E-6	(DAG 36:1)	0.17440659	[0.099-0.25] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1704	chr5	146693061	146693062	rs10875622	33568662	Dashti HS	2021-02-10	Nat Commun	Genetic determinants of daytime napping and effects on cardiometabolic health.	Daytime nap	452,633 European ancestry individuals	541,333 European ancestry individuals	5q32	STK32A	rs10875622-A		6E-26		0.009	[0.0072-0.0108] unit increase	Affymetrix [13304133] (imputed)	N
1704	chr5	146693113	146693114	rs35267617	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Intake of total sugars	174,424 European ancestry individuals	NA	5q32	STK32A	rs35267617-T	0.45	4E-7		0.85	[0.52-1.18] g/day increase	Affymetrix [10353649] (imputed)	N
1704	chr5	146735343	146735344	rs10065264	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid pneumonia vs population)	1,004 European ancestry cases, 680,354 European ancestry controls, 218 Hispanic or Latin American cases, 94,318 Hispanic or Latin American controls, 64 Black or African American cases, 22,412 Black or African American controls	NA	5q32		rs10065264-?	NR	7E-6		0.3088665	[0.18-0.44] unit increase	Illumina [9901720] (imputed)	N
1704	chr5	146775386	146775387	rs35309287	27992416	Lane JM	2016-12-19	Nat Genet	Genome-wide association analyses of sleep disturbance traits identify new loci and highlight shared genetics with neuropsychiatric and metabolic traits.	Excessive daytime sleepiness	111,648 European ancestry individuals	NA	5q32	DPYSL3	rs35309287-TA	0.97	1E-7		0.067	[0.042-0.092] unit increase	Affymetrix [up to 73355677] (imputed)	N
1704	chr5	146791755	146791756	rs11167990	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	5q32	NR	rs11167990-?	NR	3E-36				Affymetrix [NR]	N
1704	chr5	146792023	146792024	rs2288802	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1a levels	3,522 Finnish ancestry individuals	NA	5q32	NR	rs2288802-G	NR	7E-6		0.2188	[0.12-0.31] SD units decrease	NR [10700000] (imputed)	N
1705	chr5	146839952	146839953	rs78231579	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		DPYSL3	rs78231579-?	NR	3E-13		1.612	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1705	chr5	146902303	146902304	rs35694396	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	5q32		rs35694396-T	0.07	2E-11		6.68	z score increase	Affymetrix [9061022] (imputed)	N
1705	chr5	146902303	146902304	rs35694396	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	5q32		rs35694396-T	0.07	1E-9		6.07	z score increase	Affymetrix [9061022] (imputed)	N
1705	chr5	146902303	146902304	rs35694396	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	5q32	NR	rs35694396-T	0.0758	2E-12				NR [9056863] (imputed)	N
1705	chr5	146902303	146902304	rs35694396	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	5q32	LYPD6B	rs35694396-?		8E-9				NR [7428630] (imputed)	N
1705	chr5	146902303	146902304	rs35694396	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	5q32	DPYSL3	rs35694396-?		1E-8				NR [7428630] (imputed)	N
1705	chr5	146919858	146919859	rs10477338	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid pneumonia vs population)	1,004 European ancestry cases, 680,354 European ancestry controls, 218 Hispanic or Latin American cases, 94,318 Hispanic or Latin American controls, 64 Black or African American cases, 22,412 Black or African American controls	NA	5q32		rs10477338-?	NR	1E-6		0.4580914	[0.28-0.64] unit decrease	Illumina [9901720] (imputed)	N
1705	chr5	146928360	146928361	rs6866981	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5q32	DPYSL3	rs6866981-?	NR	8E-6	(ornithine)	0.24622153	[0.14-0.35] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1706	chr5	146958805	146958806	rs185652178	30898391	Lawrenson K	2019-03-19	Gynecol Oncol	Genome-wide association studies identify susceptibility loci for epithelial ovarian cancer in east Asian women.	Epithelial ovarian cancer	3,238 East Asian ancestry cases, 4,083 East Asian ancestry controls	NA	5q32		rs185652178-?	NR	8E-7	(serous_hg)	1.55		Illumina [11595112] (imputed)	N
1706	chr5	147029504	147029505	rs2053052	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5q32	SPINK1	rs2053052-?	NR	3E-6	(TAG 46:2)	0.25698084	[0.15-0.36] unit increase	Affymetrix [at least 2500000] (imputed)	N
1706	chr5	147039308	147039309	rs4705189	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5q32	SPINK1	rs4705189-?	NR	6E-6	(TAG 48:2)	0.2476068	[0.14-0.35] unit increase	Affymetrix [at least 2500000] (imputed)	N
1706	chr5	147059014	147059015	rs17107133	28044437	McDonald MN	2017-01-02	J Cachexia Sarcopenia Muscle	Body mass index change in gastrointestinal cancer and chronic obstructive pulmonary disease is associated with Dedicator of Cytokinesis 1.	Body mass index (change over time) in chronic obstructive pulmonary disease	237 cases	NA	5q32	JAKMIP2	rs17107133-?		2E-6		0.1	[0.059-0.141] unit increase	Affymetrix [418365]	N
1707	chr5	147101300	147101301	rs6895952	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q32	NR	rs6895952-G	0.02962	1E-8	(CNN2)	0.01178	NR unit increase	Illumina [1671387] (imputed)	N
1707	chr5	147106116	147106117	rs10477342	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5q32	SPINK1	rs10477342-?	NR	6E-6	(TAG 46:0)	0.23837966	[0.14-0.34] unit increase	Affymetrix [at least 2500000] (imputed)	N
1707	chr5	147127931	147127932	rs866229427	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q32	NR	rs866229427-A	0.01045	1E-16	(ABCD3)	0.07302	NR unit increase	Illumina [1671387] (imputed)	N
1707	chr5	147129598	147129599	rs188904275	33075057	Li X	2020-10-19	PLoS Genet	Automated feature extraction from population wearable device data identified novel loci associated with sleep and circadian rhythms.	Sleep activity levels	90,515 individuals	NA	5q32	JAKMIP2	rs188904275-A	NR	4E-8		0.241	[0.15-0.33] unit decrease	NR [11024754] (imputed)	N
1707	chr5	147170976	147170977	rs72835183	28203683	Heit JA	2017-02-16	Thromb Haemost	Identification of unique venous thromboembolism-susceptibility variants in African-Americans.	Venous thromboembolism adjusted for sickle cell variant rs77121243-T	393 African American cases, 4,941 African American controls.	NR	5q32	JAKMIP2	rs72835183-A	0.0449	2E-6		2.148	[1.566-2.948]	Affymetrix, Illumina [14074516] (imputed)	N
1707	chr5	147180482	147180483	rs4583876	33610756	Gao H	2021-02-18	Mitochondrion	A Genome-Wide Association Study in Human Lymphoblastoid Cells Supports Safety of Mitochondrial Complex I Inhibitor.	tricyclic pyrone compound response (IC50)	36 African American lymphoblastoid cell lines, 84 European ancestry lymphoblastoid cell lines, 76 Han Chinese ancestry lymphoblastoid cell lines	NA	5q32	JAKMIP2	rs4583876-?	NR	5E-6				Affymetrix, Illumina [1184972]	N
1707	chr5	147180761	147180762	rs12110175	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5q32	SPINK1	rs12110175-?	NR	4E-7	(PC 34:1)	0.1839844	[0.11-0.26] unit increase	Affymetrix [at least 2500000] (imputed)	N
1707	chr5	147180761	147180762	rs12110175	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5q32	SPINK1	rs12110175-?	NR	2E-6	(TAG 50:1)	0.18953097	[0.11-0.27] unit increase	Affymetrix [at least 2500000] (imputed)	N
1707	chr5	147180761	147180762	rs12110175	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5q32	SPINK1	rs12110175-?	NR	2E-6	(PC 32:1)	0.17340021	[0.1-0.24] unit increase	Affymetrix [at least 2500000] (imputed)	N
1707	chr5	147185678	147185679	rs34856929	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	5q32	Intergenic	rs34856929-?	NR	2E-6		2.919708	[NR]	Affymetrix [492217] (imputed)	N
1707	chr5	147188022	147188023	rs146437551	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	5q32	SPINK1, JAKMIP2, SCGB3A2, C5orf46	rs146437551-?		3E-15		3.816794	[2.78-5.30]	Illumina [9389922] (imputed)	N
1707	chr5	147189633	147189634	rs2082391	35264221	Caron B	2022-03-09	Genome Med	Integrative genetic and immune cell analysis of plasma proteins in healthy donors identifies novel associations involving primary immune deficiency genes.	TATI plasma levels	400 French ancestry individuals	NA	5q32		rs2082391-T	NR	3E-11		0.16	[0.11-0.21] ng/mL increase	Illumina [5201092] (imputed)	N
1708	chr5	147203905	147203906	rs3777126	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SPINK1	5,366 Icelandic ancestry individuals	NA	5q32		rs3777126-T	0.3917	3E-31		0.222371	[0.18-0.26] unit increase	Illumina [7506463] (imputed)	N
1708	chr5	147208035	147208036	rs113511958	33539483	Li Z	2021-02-04	PLoS One	Bivariate genome-wide association study (GWAS) of body mass index and blood pressure phenotypes in northern Chinese twins.	Systolic blood pressure and diastolic blood pressure (bivariate analysis)	274 Chinese ancestry dizygotic twins	NA	5q32	SPINK1	rs113511958-?	NR	5E-7				Illumina [7401356] (imputed)	N
1708	chr5	147208042	147208043	rs6580502	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	5q32	NR	rs6580502-?		4E-17	(SPINK1)	0.2504	[NR] unit increase	Illumina [NR]	N
1708	chr5	147218370	147218371	rs148911734	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic pancreatitis	1,424 European ancestry cases, 476,104 European ancestry controls, 457 East Asian ancestry cases, 177,471 East Asian ancestry controls	NA	5q32		rs148911734-T	NR	2E-14		1.2745	[0.95-1.6] unit increase	Affymetrix, Illumina [25843262] (imputed)	N
1708	chr5	147218370	147218371	rs148911734	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Acute pancreatitis	3,798 European ancestry cases, 476,104 European ancestry controls, 827 East Asian ancestry cases, 177,471 East Asian ancestry controls	NA	5q32		rs148911734-T	NR	1E-13		0.7626	[0.56-0.96] unit increase	Affymetrix, Illumina [25843473] (imputed)	N
1708	chr5	147218812	147218813	rs4705205	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	5q32	SPINK1	rs4705205-T	0.5728125	2E-17	(SPINK1, 8243_55_3)	0.21198212	[0.16-0.26] unit decrease	Illumina [> 1000000] (imputed)	N
1708	chr5	147225513	147225514	rs891992	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	5q32	SPINK1	rs891992-G	0.234	6E-6	(AST )	0.03	[NR] U/L increase	Illumina [899892]	N
1710	chr5	147474356	147474357	rs7725816	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Yeast infection	52,218 European ancestry cases, 10,235 European ancestry controls	NA	5q32	NR	rs7725816-?	NR	3E-6		0.0459	[0.027-0.065] unit decrease	Illumina [at least 560000] (imputed)	N
1710	chr5	147504556	147504557	rs2052536	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	5q32	SPINK5	rs2052536-T	0.34859375	3E-9	(SPINK5, 8028_22_3)	0.15231979	[0.1-0.2] unit decrease	Illumina [> 1000000] (imputed)	N
1710	chr5	147548262	147548263	rs10476890	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	5q32	Intergenic	rs10476890-A	0.748	9E-7	(AA)	0.033	NR unit increase	Illumina [NR] (imputed)	N
1710	chr5	147550296	147550297	rs12332430	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	5q32	SPINK14	rs12332430-T	0.738	5E-6	(AA)	0.03	NR unit increase	Illumina [NR] (imputed)	N
1710	chr5	147551345	147551346	rs9325081	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	5q32	SPINK14	rs9325081-G	0.267	5E-6	(AA)	0.03	NR unit decrease	Illumina [NR] (imputed)	N
1710	chr5	147561629	147561630	rs10055396	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5q32	NR	rs10055396-G	0.564	7E-76	(Serine protease inhibitor Kazal-type 6, SPINK6.5731.1.3)	0.45	[0.41-0.49] unit decrease	Affymetrix [10572788] (imputed)	N
1710	chr5	147575985	147575986	rs13179181	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SPINK6	5,363 Icelandic ancestry individuals	NA	5q32		rs13179181-C	0.4915	8E-186		0.502296	[0.47-0.54] unit increase	Illumina [7506463] (imputed)	N
1711	chr5	147593230	147593231	rs10038416	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	5q32	SPINK6	rs10038416-G	0.93625	2E-210	(SPINK6, 5731_1_3)	1.4298339	[1.35-1.51] unit increase	Illumina [> 1000000] (imputed)	N
1711	chr5	147603066	147603067	rs1368304	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	5q32	NR	rs1368304-G	0.915930538379341	9E-6	(IGP3)	0.2439	[0.14-0.35] unit increase	Illumina [~ 2500000] (imputed)	N
1711	chr5	147603177	147603178	rs1432688	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5q32	SPINK6	rs1432688-G	0.924	8E-135	(Serine protease inhibitor Kazal-type 6, SPINK6.5731.1.3)	1.06	[0.98-1.14] unit increase	Affymetrix [10572788] (imputed)	N
1711	chr5	147695283	147695283	rs3217238	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	5q32		rs3217238-CTCA	NR	2E-9		0.0146	[0.0099-0.0193] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
1711	chr5	147696017	147696018	rs2400509	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	NA	5q32	RP11-373N22.3	rs2400509-G	0.7417	3E-10		0.1476	[0.1-0.19] unit increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1711	chr5	147701052	147701053	rs376296328	30898391	Lawrenson K	2019-03-19	Gynecol Oncol	Genome-wide association studies identify susceptibility loci for epithelial ovarian cancer in east Asian women.	Epithelial ovarian cancer	3,238 East Asian ancestry cases, 4,083 East Asian ancestry controls	NA	5q32		rs376296328-?	NR	8E-6	(serous_hg)	1.48		Illumina [11595112] (imputed)	N
1712	chr5	147775035	147775036	rs5742007	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	5q32	FBXO38	rs5742007-G	0.343766	8E-9		0.01438386	[0.0095-0.0193] unit increase	Affymetrix [93095623] (imputed)	N
1712	chr5	147805119	147805120	rs10043775	33909500	Moll M	2021-04-28	Am J Physiol Lung Cell Mol Physiol	A Systematic Analysis of Protein-altering Exonic Variants in Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease	up to 31,465 European ancestry cases, up to 203,688 European ancestry controls, up to 1,413 African ancestry cases, up to 6,080 African ancestry controls, up to 287 East Asian ancestry cases, up to 7,484 East Asian ancestry controls, up to 61 Hispanic cases, up to 613 Hispanic controls	NA	5q32	FBXO38	rs10043775-T	0.73	2E-13		1.09	[1.06 -1.11]	Illumina [at least 109036]	N
1712	chr5	147805119	147805120	rs10043775	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	5q32		rs10043775-T	0.7325	2E-11		0.11636055	[0.081-0.151] mmHg increase	Affymetrix, Illumina [242866] (imputed)	N
1712	chr5	147805119	147805120	rs10043775	22699663	Divaris K	2012-07-01	J Dent Res	Genome-wide association study of periodontal pathogen colonization.	Periodontal microbiota	1,020 European ancestry individuals	NA	5q32	FBXO38, HTR4	rs10043775-T	0.703	2E-6	(Red)	2.06	[1.51-2.83]	Affymetrix [~ 2500000] (imputed)	N
1712	chr5	147821827	147821828	rs75666198	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H measurement	252 European ancestry individuals	NA	5q32		rs75666198-G	NR	2E-6		9.9075	[5.96-13.85] unit decrease	Illumina [NR] (imputed)	N
1712	chr5	147825494	147825495	rs4574534	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	5q32		rs4574534-?	NR	8E-8				NR [~ 8900000] (imputed)	N
1712	chr5	147832570	147832571	rs7727320	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	5q32		rs7727320-?	NR	6E-12				NR [~ 8900000] (imputed)	N
1712	chr5	147836879	147836880	rs12374521	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Lung function (FEV1/FVC) variance	316,614 European ancestry individuals	NA	5q32	FBXO38	rs12374521-?	NR	7E-10				NR [5554549] (imputed)	N
1712	chr5	147836879	147836880	rs12374521	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Lung function (FEV1/FVC)	316,614 European ancestry individuals	NA	5q32	FBXO38	rs12374521-?	NR	2E-58				NR [5554549] (imputed)	N
1712	chr5	147836879	147836880	rs12374521	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	5q32		rs12374521-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1712	chr5	147836879	147836880	rs12374521	26423011	Wain LV	2015-09-27	Lancet Respir Med	Novel insights into the genetics of smoking behaviour, lung function, and chronic obstructive pulmonary disease (UK BiLEVE): a genetic association study in UK Biobank.	Lung function in heavy smokers (low FEV1 vs high FEV1)	9,748 European ancestry individuals with low FEV1 measurements, 4,906 European ancestry individuals with high FEV1 measurements	NA	5q32	HTR4	rs12374521-T	0.451	5E-9		1.169	[1.109-1.232]	Affymetrix [28509962] (imputed)	N
1712	chr5	147837671	147837672	rs58746316	31168069	Ward J	2019-06-05	Mol Psychiatry	The genomic basis of mood instability: identification of 46 loci in 363,705 UK Biobank participants, genetic correlation with psychiatric disorders, and association with gene expression and function.	Mood instability	157,039 European ancestry cases, 206,666 European ancestry controls	NA	5q32	HTR4	rs58746316-?	NR	1E-8		0.0066702	[0.0044-0.009] unit decrease	Affymetrix [NR] (imputed)	N
1712	chr5	147842352	147842353	rs11168048	23284291	Hancock DB	2012-12-20	PLoS Genet	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (smoking interaction)	50,047 European ancestry individuals	NA	5q32	HTR4	rs11168048-?	NR	5E-17	(FEV1/FVC, Ever-smoking)			NR [~ 2500000] (imputed)	N
1712	chr5	147842352	147842353	rs11168048	20010835	Hancock DB	2009-12-13	Nat Genet	Meta-analyses of genome-wide association studies identify multiple loci associated with pulmonary function.	Pulmonary function	20,890 European ancestry individuals	16,178 European ancestry individuals	5q32	HTR4	rs11168048-T	0.58	1E-11	(FEV1/FVC)	0.4	[NR] % decrease	Affymetrix, Illumina [2534500] (imputed)	N
1712	chr5	147845814	147845815	rs3995090	20010834	Repapi E	2009-12-13	Nat Genet	Genome-wide association study identifies five loci associated with lung function.	Pulmonary function	20,288 European ancestry individuals	up to 54,276 European ancestry individuals	5q32	HTR4	rs3995090-C	0.41	4E-9	(FEV1)	0.038	[0.026-0.050] s.d. increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1712	chr5	147846706	147846707	rs6889822	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Experiencing mood swings	373,733 European ancestry individuals	NA	5q32	SPINK7	rs6889822-A	0.385749	5E-9		5.86	z score increase	NR [10847151] (imputed)	N
1713	chr5	147849758	147849759	rs3995091	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Cardio-cerebrovascular disease in dyslipidemia	1,039 Korean ancestry cases, 19,727 Korean ancestry controls	NA	5q32		rs3995091-G	0.1817	1E-6		0.7268	[0.6396-0.8258]	Affymetrix [7975321] (imputed)	N
1713	chr5	147854969	147854970	rs10037493	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	5q32	HTR4	rs10037493-C	0.55	3E-33		1.13	[1.10-1.15]	Affymetrix, Illumina [6224355] (imputed)	N
1713	chr5	147856332	147856333	rs7733088	30940143	Zhu Z	2019-04-02	Respir Res	Genetic overlap of chronic obstructive pulmonary disease and cardiovascular disease-related traits: a large-scale genome-wide cross-trait analysis.	Chronic obstructive pulmonary disease or high blood pressure (pleiotropy)	12,550 European and unknown ancestry chronic obstructive pulmonary disease cases, 46,368 European and unknown ancestry controls, 144,793 European ancestry high blood pressure cases, 313,761 European ancestry controls	NA	5q32	FBXO38, HTR4, LOC102546294, SPINK7, SPINK9	rs7733088-?	NR	1E-13				Affymetrix [up to 7325140] (imputed)	N
1713	chr5	147856332	147856333	rs7733088	28166215	Hobbs BD	2017-02-06	Nat Genet	Genetic loci associated with chronic obstructive pulmonary disease overlap with loci for lung function and pulmonary fibrosis.	Chronic obstructive pulmonary disease	11,157 European ancestry cases, 36,699 European ancestry controls, 1,142 African American cases, 2,380 African American controls, 199 Korean ancestry cases, 6,741 Korean ancestry controls, 52 Hispanic cases, 548 Hispanic controls.	12,051 European ancestry cases, 11,111 European ancestry controls, 153 Korean ancestry cases, 205 Korean ancestry controls.	5q32	HTR4	rs7733088-G	0.6	5E-26		1.18	[1.14,1.21]	Affymetrix, Illumina [NR] (imputed)	N
1713	chr5	147856332	147856333	rs7733088	22837378	Wilk JB	2012-07-26	Am J Respir Crit Care Med	Genome-wide association studies identify CHRNA5/3 and HTR4 in the development of airflow obstruction.	Airflow obstruction	up to 3,368 European ancestry cases, up to 29,507 European ancestry controls	331 European ancestry cases, 2,550 European ancestry controls	5q32	HTR4	rs7733088-?	0.62	4E-9	(Smoker)	1.2346	[NR]	Affymetrix, Illumina [up to 2500000] (imputed)	N
1713	chr5	147856391	147856392	rs7715901	33766948	Zhu Z	2021-03-25	Eur Respir J	A large-scale genome-wide association analysis of lung function in the Chinese population identifies novel loci and highlights shared genetic etiology with obesity.	Lung function (FEV1)	100,285 Chinese ancestry individuals	NA	5q32		rs7715901-A	0.39	6E-11		0.03	L decrease	Affymetrix [NR] (imputed)	N
1713	chr5	147856391	147856392	rs7715901	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FEV1/FVC)	48,943 European ancestry individuals	57,176 European ancestry individuals, 38,199 individuals.	5q32	HTR4	rs7715901-G	0.3957	8E-23		0.066	[0.052-0.08] unit increase	Affymetrix [27624732] (imputed)	N
1713	chr5	147856391	147856392	rs7715901	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FEV1)	48,943 European ancestry individuals.	57,176 European ancestry individuals, 38,199 individuals.	5q32	HTR4	rs7715901-G	0.4	2E-11		0.046	[0.032-0.06] unit increase	Affymetrix [up to 27624732] (imputed)	N
1713	chr5	147856391	147856392	rs7715901	26423011	Wain LV	2015-09-27	Lancet Respir Med	Novel insights into the genetics of smoking behaviour, lung function, and chronic obstructive pulmonary disease (UK BiLEVE): a genetic association study in UK Biobank.	Lung function (low FEV1 vs high FEV1)	19,493 European ancestry individuals with low FEV1 measurements, 9,808 European ancestry individuals with high FEV1 measurements	NA	5q32	HTR4	rs7715901-G	NR	9E-11		0.127	[0.088-0.166] unit decrease	Affymetrix [28509962] (imputed)	N
1713	chr5	147856521	147856522	rs7733410	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (adrenergics, inhalants)	28,880 European ancestry cases, 147,565 European ancestry controls, 5,880 East Asian ancestry cases, 172,846 East Asian ancestry controls	NA	5q32		rs7733410-A	NR	5E-10		0.0516	[0.035-0.068] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1713	chr5	147856521	147856522	rs7733410	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	5q32	NR	rs7733410-A	0.44	3E-9		0.91	[0.88-0.94]	Affymetrix [9886854] (imputed)	N
1713	chr5	147856521	147856522	rs7733410	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	5q32	NR	rs7733410-A	0.44	4E-23			[NR]	Affymetrix [9886854] (imputed)	N
1713	chr5	147856521	147856522	rs7733410	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	5q32	NR	rs7733410-A	0.44	4E-17		0.9	[0.88-0.92]	Affymetrix [9886854] (imputed)	N
1713	chr5	147856521	147856522	rs7733410	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	5q32	NR	rs7733410-A	0.44	3E-22			[NR]	Affymetrix [9886854] (imputed)	N
1713	chr5	147856521	147856522	rs7733410	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in non-current smokers	16,488 European ancestry cases, 169,688 European ancestry controls	NA	5q32	NR	rs7733410-A	0.44	4E-17		0.9	[0.88-0.92]	Affymetrix [9886854] (imputed)	N
1713	chr5	147856521	147856522	rs7733410	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in never smokers	8,631 European ancestry cases, 120,544 European ancestry controls	NA	5q32	NR	rs7733410-A	0.44	4E-9		0.91	[0.88-0.94]	Affymetrix [9886854] (imputed)	N
1713	chr5	147856521	147856522	rs7733410	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in ever smokers	12,446 European ancestry cases, 59,145 European ancestry controls	NA	5q32	NR	rs7733410-A	0.44	1E-16		0.88	[0.86-0.91]	Affymetrix [9886854] (imputed)	N
1713	chr5	147856521	147856522	rs7733410	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in current smokers	4,589 European ancestry cases, 10,001 European ancestry controls	NA	5q32	NR	rs7733410-A	0.44	1E-7		0.86	[0.81-0.91]	Affymetrix [9886854] (imputed)	N
1713	chr5	147856521	147856522	rs7733410	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (adrenergics, inhalants)	28,880 European ancestry cases, 147,565 European ancestry controls	NA	5q32	HTR4	rs7733410-A	0.442033	7E-9		0.052460343	[0.035-0.07] unit decrease	Affymetrix [7288503] (imputed)	N
1713	chr5	147856521	147856522	rs7733410	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	5q32	HTR4	rs7733410-A	0.4407	6E-33		0.0303	[0.025-0.035] unit increase	Affymetrix [19819130] (imputed)	N
1713	chr5	147856521	147856522	rs7733410	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	5q32	HTR4	rs7733410-A	0.4407	6E-6		0.0108	[0.0061-0.0155] unit increase	Affymetrix [19819130] (imputed)	N
1713	chr5	147856521	147856522	rs7733410	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	5q32	HTR4	rs7733410-A	0.4407	2E-96		0.0505	[0.046-0.055] unit increase	Affymetrix [19819130] (imputed)	N
1713	chr5	147856521	147856522	rs7733410	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	5q32	HTR4	rs7733410-A	0.4407	7E-47		0.0342	[0.029-0.039] unit increase	Affymetrix [19819130] (imputed)	N
1713	chr5	147856521	147856522	rs7733410	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	5q32		rs7733410-?	NR	4E-146				NR [~ 8900000] (imputed)	N
1713	chr5	147871136	147871137	rs10054327	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	5q32	NR	rs10054327-?		3E-15		0.0172449	[0.013-0.022] unit increase	Affymetrix [19400418] (imputed)	N
1713	chr5	147871218	147871219	rs13164294	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	5q32		rs13164294-T	NR	1E-9		0.0115	[0.0078-0.0152] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
1713	chr5	147871218	147871219	rs13164294	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	5q32		rs13164294-T	NR	2E-10		0.0116	[0.0081-0.0151] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
1713	chr5	147871218	147871219	rs13164294	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	5q32		rs13164294-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1713	chr5	147871507	147871508	rs34070447	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	5q32	HTR4	rs34070447-A	0.566	6E-14		0.1971	[0.15-0.25] mmHg decrease	Affymetrix [NR] (imputed)	N
1713	chr5	147871507	147871508	rs34070447	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Diastolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	5q32	HTR4	rs34070447-A	0.5694	2E-10		0.1126	[0.078-0.147] mmHg decrease	Affymetrix [NR] (imputed)	N
1713	chr5	147874555	147874556	rs4264931	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls, 22,356 East Asian ancestry cases, 156,370 East Asian ancestry controls	NA	5q32		rs4264931-A	NR	8E-9		0.0369	[0.024-0.049] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1713	chr5	147874687	147874688	rs3957781	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	5q32		rs3957781-A	NR	3E-11		0.0108	[0.0077-0.0139] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
1713	chr5	147886010	147886011	rs4554203	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	5q32	HTR4	rs4554203-A	0.420325	3E-9		0.013271292	[0.0089-0.0177] unit decrease	Affymetrix [93095623] (imputed)	N
1713	chr5	147886366	147886367	rs4264932	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	5q32	NR	rs4264932-G	0.419919	7E-11		0.012829	[0.009-0.0167] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
1713	chr5	147886366	147886367	rs4264932	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	5q32	NR	rs4264932-G	0.419944	7E-11		0.012779	[0.0089-0.0166] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
1713	chr5	147886775	147886776	rs9686785	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q32	NR	rs9686785-T	0.449563	8E-10				Affymetrix, Illumina [24558453] (imputed)	N
1713	chr5	147893808	147893809	rs3857429	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	5q32	HTR4	rs3857429-C	0.435366	1E-9		0.013542256	[0.0092-0.0179] unit decrease	Affymetrix [93095623] (imputed)	N
1713	chr5	147959185	147959186	rs4336354	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	5q32		rs4336354-C	NR	3E-10		0.0145	[0.01-0.019] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
1713	chr5	147967745	147967746	rs1833710	34532976	Wan J	2021-09-17	J Thromb Haemost	Kallikrein augments the anticoagulant function of the protein C system in thrombin generation.	Thrombin generation parameter (peak thrombin generation)	327 European ancestry individuals	NA	5q32		rs1833710-A	0.11	2E-7		0.635	% increase	Illumina [7000000] (imputed)	N
1714	chr5	148017607	148017607	rs34684879	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	5q32	NR	rs34684879-GT	NR	3E-10		0.0156	[0.011-0.02] unit increase	Affymetrix [9000000] (imputed)	N
1714	chr5	148020949	148020950	rs7712001	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	5q32		rs7712001-?	NR	7E-9		0.011939	[0.0079-0.016] unit increase	NR [6912294] (imputed)	N
1714	chr5	148041360	148041361	rs58862611	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	5q32		rs58862611-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1714	chr5	148071253	148071254	rs10041818	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	5q32		rs10041818-?	NR	2E-13				NR [~ 8900000] (imputed)	N
1714	chr5	148076849	148076850	rs7729785	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	5q32		rs7729785-?	NR	8E-8				NR [~ 8900000] (imputed)	N
1714	chr5	148089586	148089587	rs13163314	31409800	Pazoki R	2019-08-13	Nat Commun	GWAS for urinary sodium and potassium excretion highlights pathways shared with cardiovascular traits.	Urinary sodium excretion	446,237 European ancestry individuals	7,612 African ancestry individuals, 10,095 South Asian ancestry individuals	5q32	HTR4	rs13163314-C	0.768009	9E-12	(EA)	0.0100176	[0.0071-0.0129] unit increase	Affymetrix [~ 8800000] (imputed)	N
1715	chr5	148124698	148124699	rs6887717	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	5q32		rs6887717-T	NR	2E-10		0.0158	[0.011-0.021] unit increase	Affymetrix, Illumina [20535873] (imputed)	N
1715	chr5	148172927	148172928	rs9285673	30738427	Penney ME	2019-02-09	BMC Cancer	A genome-wide association study identifies single nucleotide polymorphisms associated with time-to-metastasis in colorectal cancer.	Metastasis in stage I-III microsatellite instability low/stable colorectal cancer (time to event)	379 European ancestry cases	NA	5q32	NR	rs9285673-C	NR	2E-8	(Cox proportional hazards regression model)	36.7	[10.53-127.95]	Illumina [810622]	N
1715	chr5	148198998	148198999	rs4705059	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	5q32		rs4705059-T	NR	2E-42		0.0235	[0.02-0.027] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
1715	chr5	148198998	148198999	rs4705059	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	5q32	intergenic	rs4705059-T	0.5484	2E-10		0.02428348	[0.017-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1715	chr5	148199241	148199242	rs10078004	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	5q32		rs10078004-A	0.551726	9E-56		0.035444953	[0.031-0.04] unit decrease	Affymetrix [93095623] (imputed)	N
1715	chr5	148200010	148200011	rs56330463	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	5q32		rs56330463-T	0.448	2E-24				Affymetrix [10369434] (imputed)	N
1715	chr5	148200010	148200011	rs56330463	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	5q32		rs56330463-C	0.552209	5E-23		0.022178745	[0.018-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1715	chr5	148200010	148200011	rs56330463	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	5q32		rs56330463-C	0.552271	1E-95		0.046763573	[0.042-0.051] unit increase	Affymetrix [93095623] (imputed)	N
1715	chr5	148200010	148200011	rs56330463	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	5q32		rs56330463-C	0.552269	9E-72		0.04010975	[0.036-0.044] unit increase	Affymetrix [93095623] (imputed)	N
1715	chr5	148200010	148200011	rs56330463	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q32	NR	rs56330463-C	0.600734	1E-82				Affymetrix, Illumina [19872809] (imputed)	N
1715	chr5	148200010	148200011	rs56330463	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	5q32	NR	rs56330463-C	0.55326	5E-86		0.039484	[0.036-0.043] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
1715	chr5	148200010	148200011	rs56330463	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	5q32		rs56330463-?	NR	3E-76				NR [~ 8900000] (imputed)	N
1715	chr5	148200010	148200011	rs56330463	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	5q32	intergenic	rs56330463-C	0.551	1E-21		0.03484083	[0.028-0.042] unit increase	Affymetrix [~ 2500000] (imputed)	N
1715	chr5	148200010	148200011	rs56330463	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	5q32	intergenic	rs56330463-C	0.5508	3E-27		0.03942365	[0.032-0.047] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1715	chr5	148200010	148200011	rs56330463	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	5q32	intergenic	rs56330463-C	0.5509	2E-41		0.04930519	[0.042-0.056] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1715	chr5	148200010	148200011	rs56330463	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	5q32	intergenic	rs56330463-C	0.5508	3E-18		0.03178564	[0.025-0.039] unit increase	Affymetrix [~ 2500000] (imputed)	N
1715	chr5	148200010	148200011	rs56330463	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	5q32	intergenic	rs56330463-C	0.5508	3E-24		0.0370874	[0.03-0.044] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1715	chr5	148200010	148200011	rs56330463	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	5q32	intergenic	rs56330463-C	0.551	5E-40		0.04820344	[0.041-0.055] unit increase	Affymetrix [~ 2500000] (imputed)	N
1715	chr5	148200010	148200011	rs56330463	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	5q32	intergenic	rs56330463-C	0.5509	1E-44		0.05123445	[0.044-0.058] unit increase	Affymetrix [~ 2500000] (imputed)	N
1715	chr5	148200010	148200011	rs56330463	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	5q32	intergenic	rs56330463-C	0.5511	7E-27		0.03915381	[0.032-0.046] unit increase	Affymetrix [~ 2500000] (imputed)	N
1715	chr5	148200552	148200553	rs2082382	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	5q32		rs2082382-A	NR	2E-12		0.017	[0.012-0.022] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1715	chr5	148200552	148200553	rs2082382	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	5q32		rs2082382-A	NR	1E-30		0.0276	[0.023-0.032] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
1715	chr5	148200552	148200553	rs2082382	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	5q32		rs2082382-G	0.453	5E-15				Affymetrix [10369434] (imputed)	N
1715	chr5	148200552	148200553	rs2082382	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	5q32	NR	rs2082382-A	0.547716	1E-21		0.021333924	[0.017-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1715	chr5	148200552	148200553	rs2082382	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	5q32		rs2082382-A	0.54767	1E-47		0.032449875	[0.028-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
1715	chr5	148200552	148200553	rs2082382	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	5q32		rs2082382-?	NR	1E-19				NR [~ 8900000] (imputed)	N
1715	chr5	148200552	148200553	rs2082382	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	5q32	intergenic	rs2082382-A	0.5467	9E-19		0.03217761	[0.025-0.039] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1715	chr5	148200552	148200553	rs2082382	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	5q32	intergenic	rs2082382-A	0.5467	6E-23		0.03592562	[0.029-0.043] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1715	chr5	148200552	148200553	rs2082382	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	5q32	intergenic	rs2082382-A	0.5467	2E-23		0.03618277	[0.029-0.043] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1715	chr5	148200552	148200553	rs2082382	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	5q32	intergenic	rs2082382-A	0.5467	3E-15		0.02882966	[0.022-0.036] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1715	chr5	148200552	148200553	rs2082382	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	5q32	intergenic	rs2082382-A	0.5468	1E-18		0.03204283	[0.025-0.039] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1715	chr5	148200599	148200600	rs2082395	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	5q32		rs2082395-G	0.547067	1E-32		0.026716897	[0.022-0.031] unit increase	Affymetrix [93095623] (imputed)	N
1715	chr5	148201315	148201316	rs11959615	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	5q32		rs11959615-?	NR	7E-8				NR [~ 8900000] (imputed)	N
1715	chr5	148203143	148203144	rs11960649	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q32	NR	rs11960649-C	0.621366	2E-22				Affymetrix, Illumina [24649327] (imputed)	N
1715	chr5	148203143	148203144	rs11960649	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	5q32	NR	rs11960649-C	0.553162	4E-24		0.019825	[0.016-0.024] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1715	chr5	148203143	148203144	rs11960649	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q32	NR	rs11960649-C	0.595863	3E-51				Affymetrix, Illumina [23114412] (imputed)	N
1715	chr5	148203143	148203144	rs11960649	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	5q32	NR	rs11960649-C	0.552546	2E-53		0.030634	[0.027-0.035] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
1715	chr5	148203235	148203236	rs35684381	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	5q32	ADRB2	rs35684381-T	0.85	3E-7	(conditional on rs10037493)	1.08	[NR]	Affymetrix, Illumina [6224355] (imputed)	N
1715	chr5	148206374	148206375	rs1801704	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	5q32		rs1801704-C	0.451	5E-17				Affymetrix [10369434] (imputed)	N
1715	chr5	148206884	148206885	rs1800888	33909500	Moll M	2021-04-28	Am J Physiol Lung Cell Mol Physiol	A Systematic Analysis of Protein-altering Exonic Variants in Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease	up to 31,465 European ancestry cases, up to 203,688 European ancestry controls, up to 1,413 African ancestry cases, up to 6,080 African ancestry controls, up to 287 East Asian ancestry cases, up to 7,484 East Asian ancestry controls, up to 61 Hispanic cases, up to 613 Hispanic controls	NA	5q32	ADRB2	rs1800888-T	0.014	9E-13		1.32	[1.22 -1.42]	Illumina [at least 109036]	N
1715	chr5	148206884	148206885	rs1800888	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	5q32	ADRB2	rs1800888-T	0.014831	1E-9		0.05565328	[0.038-0.074] unit increase	Affymetrix [93095623] (imputed)	N
1715	chr5	148206884	148206885	rs1800888	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	5q32	ADRB2	rs1800888-T	0.0147	2E-16		0.0849	[0.065-0.105] unit decrease	Affymetrix [19819130] (imputed)	N
1715	chr5	148206884	148206885	rs1800888	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	5q32	ADRB2	rs1800888-T	0.0147	2E-27		0.1081	[0.088-0.128] unit decrease	Affymetrix [19819130] (imputed)	N
1715	chr5	148206884	148206885	rs1800888	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	5q32	ADRB2	rs1800888-T	0.0147	6E-18		0.0844	[0.065-0.104] unit decrease	Affymetrix [19819130] (imputed)	N
1715	chr5	148206884	148206885	rs1800888	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	5q32		rs1800888-?	NR	9E-39				NR [~ 8900000] (imputed)	N
1715	chr5	148206884	148206885	rs1800888	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FEV1)	48,943 European ancestry individuals.	57,176 European ancestry individuals, 38,199 individuals.	5q32	NR	rs1800888-T	0.0152	7E-8	(conditioned on rs7715901)	0.088	[0.057-0.119] unit decrease	Affymetrix [up to 27624732] (imputed)	N
1715	chr5	148216691	148216692	rs11957895	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	5q32	NR	rs11957895-?	NR	2E-24		10.22	NR z score decrease	Illumina [at least 830937] (imputed)	N
1715	chr5	148237384	148237385	rs57108954	30287806	Zhou H	2018-10-04	Transl Psychiatry	Genome-wide association study identifies glutamate ionotropic receptor GRIA4 as a risk gene for comorbid nicotine dependence and major depression.	Nicotine dependence and major depression (severity of comorbidity)	3,724 African American individuals	NA	5q32	Intergenic	rs57108954-T	0.094	3E-6		1.0187	[0.59-1.45] unit decrease	Illumina [9520174] (imputed)	N
1715	chr5	148238968	148238969	rs6580585	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Stem cell factor levels	8,290 Finnish ancestry individuals	NA	5q32	NR	rs6580585-G		8E-6		0.0745	[0.042-0.107] SD units decrease	NR [10700000] (imputed)	N
1716	chr5	148242722	148242723	rs6580586	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	5q32		rs6580586-C	0.102836	2E-13		0.026651181	[0.02-0.034] unit increase	Affymetrix [93095623] (imputed)	N
1716	chr5	148242722	148242723	rs6580586	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	5q32		rs6580586-C	0.102834	1E-10		0.023481077	[0.016-0.031] unit increase	Affymetrix [93095623] (imputed)	N
1716	chr5	148242722	148242723	rs6580586	29615537	Kulminski AM	2018-03-01	Aging (Albany NY)	Strong impact of natural-selection-free heterogeneity in genetics of age-related phenotypes.	Systolic blood pressure	up to 33,431 European ancestry individuals	NA	5q32	ADRB2	rs6580586-C	0.116	9E-6		0.91187835	unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1716	chr5	148248005	148248006	rs868812102	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q32	NR	rs868812102-G	0.02613	7E-10	(GALE)	0.1121	NR unit decrease	Illumina [1671387] (imputed)	N
1716	chr5	148248005	148248006	rs868812102	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q32	NR	rs868812102-G	0.02613	2E-9	(GPX4)	0.01055	NR unit decrease	Illumina [1671387] (imputed)	N
1716	chr5	148257071	148257072	rs72829169	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Elusimicrobiaceae abundance in stool	5,959 Finnish ancestry individuals	NA	5q32		rs72829169-T	0.0274254	2E-8		0.103901	[0.068-0.14] unit increase	Illumina [7980478] (imputed)	N
1716	chr5	148283321	148283322	rs17108911	26242244	Ma Y	2015-08-05	Sci Rep	Association of chromosome 5q21.3 polymorphisms with the exploratory eye movement dysfunction in schizophrenia.	Exploratory eye movement dysfunction in schizophrenia (number of eye fixations)	128 Han Chinese ancestry cases	NA	5q32	NR	rs17108911-?	NR	6E-6		8.022	[4.69-11.35] unit decrease	Illumina [498648]	N
1716	chr5	148324548	148324549	rs28769311	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	L1-L4 bone mineral density x serum urate levels interaction	2,207 men, 2,354 women	NA		SH3TC2	rs28769311-?	NR	8E-6	(male)	0.189717	[NR] unit increase	Affymetrix [NR] (imputed)	N
1716	chr5	148340269	148340270	rs60580948	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	5q32	SH3TC2	rs60580948-G	0.139451	5E-12		0.022359027	[0.016-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
1716	chr5	148340269	148340270	rs60580948	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	5q32	SH3TC2	rs60580948-G	0.139403	1E-10		0.020919362	[0.015-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1716	chr5	148342093	148342094	rs6876503	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	5q32	NR	rs6876503-T	0.139476	3E-11		0.019111	[0.013-0.025] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1716	chr5	148345454	148345455	rs7732063	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	5q32	SH3TC2	rs7732063-C	0.139511	9E-10		0.020260427	[0.014-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1716	chr5	148361621	148361622	rs17722107	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	5q32		rs17722107-C	NR	5E-13		0.0168	[0.012-0.021] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1716	chr5	148361621	148361622	rs17722107	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	5q32		rs17722107-C	NR	3E-15		0.0187	[0.014-0.023] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
1716	chr5	148361621	148361622	rs17722107	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	5q32		rs17722107-C	NR	2E-14		0.0188	[0.014-0.024] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1716	chr5	148361621	148361622	rs17722107	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	5q32		rs17722107-?	NR	1E-16				NR [~ 8900000] (imputed)	N
1717	chr5	148387611	148387612	rs1036190	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	5q32	SH3TC2	rs1036190-G	0.6023	2E-10		0.2165	[0.15-0.28] mmHg increase	Affymetrix [NR] (imputed)	N
1717	chr5	148390294	148390295	rs7704297	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	5q32	NR	rs7704297-T		9E-14		0.359	unit increase	Affymetrix [at least 2696785] (imputed)	N
1717	chr5	148390294	148390295	rs7704297	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	5q32	NR	rs7704297-T		5E-8		0.245	unit increase	Affymetrix [at least 2696785] (imputed)	N
1717	chr5	148390294	148390295	rs7704297	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	5q32	NR	rs7704297-T		3E-6	(EA)	0.229	unit increase	Affymetrix [at least 2696785] (imputed)	N
1717	chr5	148390294	148390295	rs7704297	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	5q32	NR	rs7704297-T		5E-19		0.263	unit increase	Affymetrix [at least 2696785] (imputed)	N
1717	chr5	148391139	148391140	rs9687065	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Diastolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	5q32	ABLIM3, SH3TC2	rs9687065-G	0.201	3E-6	(EA, initial)	0.256	[0.15-0.36] unit decrease	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
1717	chr5	148391139	148391140	rs9687065	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	5q32	SH3TC2	rs9687065-A		1E-13		0.359	unit increase	Affymetrix [at least 2696785] (imputed)	N
1717	chr5	148391139	148391140	rs9687065	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	5q32	SH3TC2	rs9687065-A		4E-6	(EA)	0.226	unit increase	Affymetrix [at least 2696785] (imputed)	N
1717	chr5	148391139	148391140	rs9687065	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	5q32	SH3TC2	rs9687065-A		1E-7		0.239	unit increase	Affymetrix [at least 2696785] (imputed)	N
1717	chr5	148391139	148391140	rs9687065	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	5q32	SH3TC2	rs9687065-A		7E-19		0.262	unit increase	Affymetrix [at least 2696785] (imputed)	N
1717	chr5	148391139	148391140	rs9687065	26390057	Kato N	2015-09-21	Nat Genet	Trans-ancestry genome-wide association study identifies 12 genetic loci influencing blood pressure and implicates a role for DNA methylation.	Diastolic blood pressure	31,516 East Asian ancestry individuals,  35,352 European ancestry individuals, 33,126 South Asian ancestry individuals	87,205 individuals, 48,268 East Asian ancestry individuals, 68,456 European ancestry individuals, 16,328 South Asian ancestry individuals	5q32	ABLIM3, SH3TC2	rs9687065-A	0.776269666	7E-11		0.25575662	[0.18-0.33] mmHg increase	Affymetrix, Illumina, Perlegen [~ 2100000] (imputed)	N
1717	chr5	148392361	148392362	rs11954893	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	5q32		rs11954893-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1717	chr5	148433548	148433549	rs250677	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	5q32	NR	rs250677-C	0.2221	8E-6	(EA)	0.0343	[0.019-0.049] unit increase	Illumina [~ 11800000] (imputed)	N
1718	chr5	148517949	148517950	rs13436875	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q32	NR	rs13436875-T	0.01045	3E-8	(POLR2H)	0.001507	NR unit increase	Illumina [1671387] (imputed)	N
1718	chr5	148524819	148524820	rs11743174	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	5q32	ABLIM3	rs11743174-T	0.6671	4E-9		0.0019	[0.0013-0.0025] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
1718	chr5	148542405	148542406	rs4705067	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	5q32		rs4705067-G	NR	3E-8		0.0102	[0.0067-0.0137] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
1718	chr5	148558060	148558061	rs4291002	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	5q32	NR	rs4291002-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
1718	chr5	148565603	148565604	rs6884531	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	5q32		rs6884531-?	NR	9E-10				NR [~ 8900000] (imputed)	N
1718	chr5	148572914	148572915	rs10463416	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	5q32	NR	rs10463416-A	0.3589	9E-14		0.0137	[0.01-0.017] unit increase	NR [~ 27400000] (imputed)	N
1718	chr5	148593376	148593376	rs34289553	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5q32	ABLIM3	rs34289553-A	0.67611	5E-8	(-6 ms)	0.0317359	[0.02-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
1718	chr5	148593376	148593376	rs34289553	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5q32	ABLIM3	rs34289553-A	0.67611	2E-8	(-4 ms)	0.0324644	[0.021-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
1718	chr5	148596693	148596694	rs3839234	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FEV1)	48,943 European ancestry individuals.	57,176 European ancestry individuals, 38,199 individuals.	5q32	ABLIM3	rs3839234-?	0.4701	4E-11		0.026	[0.018-0.034] unit decrease	Affymetrix [up to 27624732] (imputed)	N
1718	chr5	148601242	148601243	rs13171669	34108613	Ivarsdottir EV	2021-06-09	Commun Biol	The genetic architecture of age-related hearing impairment revealed by genome-wide association analysis.	Age-related hearing impairment	121,934 European ancestry cases, 591,699 European ancestry controls	NA	5q32	ABLIM3	rs13171669-G	42.34	8E-10	(additive)	1.03	[NR]	Affymetrix, Illumina [46900000] (imputed)	N
1718	chr5	148601242	148601243	rs13171669	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	5q32	ABLIM3	rs13171669-?	NR	7E-32		0.778	[0.64-0.91] unit decrease	Affymetrix [11100000] (imputed)	N
1718	chr5	148611622	148611623	rs1975340	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	5q32	ABLIM3	rs1975340-A	0.46	4E-6	(conditional on rs10037493)	1.05	[NR]	Affymetrix, Illumina [6224355] (imputed)	N
1718	chr5	148612321	148612322	rs4490572	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	5q32		rs4490572-?	NR	4E-16				NR [~ 8900000] (imputed)	N
1718	chr5	148615945	148615946	rs1109114	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	5q32	ABLIM3	rs1109114-C	0.578	4E-7	(EA, men)	0.021	[0.013-0.029] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1719	chr5	148647552	148647553	rs10515625	35232999	Garcia-Etxebarria K	2022-03-01	Sci Rep	Local genetic variation of inflammatory bowel disease in Basque population and its effect in risk prediction.	Inflammatory bowel disease	498 European ancestry cases, 935 European ancestry controls	NA	5q32		rs10515625-C	0.105	4E-6		0.5		Illumina [5411567] (imputed)	N
1719	chr5	148652301	148652302	rs11952673	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	5q32	ABLIM3	rs11952673-T	0.3989	3E-6		0.012	[0.0069-0.0171] unit decrease	Affymetrix [19819130] (imputed)	N
1719	chr5	148652301	148652302	rs11952673	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	5q32	ABLIM3	rs11952673-T	0.3989	2E-9		0.0146	[0.0099-0.0193] unit decrease	Affymetrix [19819130] (imputed)	N
1719	chr5	148652301	148652302	rs11952673	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	5q32	ABLIM3	rs11952673-T	0.3989	3E-7		0.0125	[0.0076-0.0174] unit decrease	Affymetrix [19819130] (imputed)	N
1719	chr5	148652301	148652302	rs11952673	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	5q32	ABLIM3	rs11952673-T	0.3989	1E-14		0.0186	[0.014-0.023] unit decrease	Affymetrix [19819130] (imputed)	N
1719	chr5	148652301	148652302	rs11952673	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	5q32		rs11952673-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1719	chr5	148663808	148663809	rs352359	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	5q32		rs352359-C	0.4	8E-40		13.21	z score increase	Affymetrix [9061022] (imputed)	N
1719	chr5	148663991	148663992	rs352358	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	5q32		rs352358-C	0.4	3E-14		7.59	z score increase	Affymetrix [9061022] (imputed)	N
1719	chr5	148663991	148663992	rs352358	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	5q32		rs352358-C	0.4	3E-14		7.62	z score increase	Affymetrix [9061022] (imputed)	N
1719	chr5	148663991	148663992	rs352358	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	5q32	NR	rs352358-C	0.3484	2E-13				NR [9056863] (imputed)	N
1719	chr5	148663991	148663992	rs352358	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	5q32	NR	rs352358-C	0.3484	9E-16				NR [9056863] (imputed)	N
1719	chr5	148663991	148663992	rs352358	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 7)	19,670 European ancestry individuals	NA	5q32		rs352358-?	NR	6E-13				NR [9705931] (imputed)	N
1719	chr5	148664770	148664771	rs24283	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	5q32	NR	rs24283-?	NR	2E-8	(right isthmus cingulate)			NR [9227495] (imputed)	N
1719	chr5	148706298	148706299	rs10044242	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	5q32	AFAP1L1	rs10044242-G	0.0050	9E-6	(Diet protein )	0.02	[NR] g/d increase	Illumina [899892]	N
1719	chr5	148728163	148728164	rs783779	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5q32		rs783779-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1719	chr5	148747901	148747902	rs4705336	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q32	NR	rs4705336-G	0.802035	1E-11				Affymetrix, Illumina [17210439] (imputed)	N
1719	chr5	148747901	148747902	rs4705336	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	5q32	NR	rs4705336-G	0.797332	1E-11		0.016108	[0.011-0.021] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
1720	chr5	148779838	148779839	rs60232573	31447353	Maciukiewicz M	2019-08-22	Schizophr Res	Genome-wide association study on antipsychotic-induced weight gain in Europeans and African-Americans.	Antipsychotic drug-induced weight gain in schizophrenia	144 European ancestry individuals, 57 African American individuals	NA	5q32	IL17B	rs60232573-?		1E-6	(EA)	0.3788	unit increase	Illumina [1819374] (imputed)	N
1720	chr5	148783766	148783767	rs6887452	30621171	Coltell O	2019-01-04	Nutrients	Genome-Wide Association Study (GWAS) on Bilirubin Concentrations in Subjects with Metabolic Syndrome: Sex-Specific GWAS Analysis and Gene-Diet Interactions in a Mediterranean Population.	Serum bilirubin levels x Mediterranean diet adherence interaction in metabolic syndrome	257 European ancestry individuals with low adherence to Mediterranean diet, 161 European ancestry individuals with high adherence to Mediterranean diet	NA	5q32	IL17B	rs6887452-G	0.397	3E-8				Illumina [622468]	N
1720	chr5	148787468	148787469	rs368510	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	5q32	CARMN	rs368510-G	0.66944	1E-33		0.0236691	[0.02-0.028] unit decrease	NR [13737936] (imputed)	N
1720	chr5	148787468	148787469	rs368510	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	5q32		rs368510-?	NR	2E-37				NR [~ 8900000] (imputed)	N
1720	chr5	148787468	148787469	rs368510	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	5q32		rs368510-?	NR	7E-40		0.0282248	[0.024-0.033] unit decrease	Affymetrix [20259828] (imputed)	N
1720	chr5	148787468	148787469	rs368510	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	5q32	CARMN	rs368510-G	0.668067	9E-8	(men)	0.0294239	[0.019-0.04] unit decrease	NR [17166351] (imputed)	N
1720	chr5	148787468	148787469	rs368510	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	5q32	CARMN	rs368510-G	0.667791	7E-15		0.0273314	[0.02-0.034] unit decrease	NR [17166351] (imputed)	N
1720	chr5	148787468	148787469	rs368510	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	5q32	CARMN	rs368510-G	0.66755	9E-9	(women)	0.0264839	[0.017-0.036] unit decrease	NR [17166351] (imputed)	N
1720	chr5	148808001	148808002	rs78823151	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	5q32	NR	rs78823151-?	NR	8E-6	(EA)	0.6201	[0.35-0.89] unit decrease	Illumina [up to 11892802] (imputed)	N
1720	chr5	148833294	148833295	rs353233	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	5q32	CSNK1A1	rs353233-G	0.59	8E-6	(conditional on rs10037493)	1.05	[NR]	Affymetrix, Illumina [6224355] (imputed)	N
1720	chr5	148838116	148838117	rs10454990	32117412	Boua PR	2020-02-07	Front Genet	Novel and Known Gene-Smoking Interactions With cIMT Identified as Potential Drivers for Atherosclerosis Risk in West-African Populations of the AWI-Gen Study.	Carotid intima media thickness x smoking interaction	465 West African ancestry male smokers, 1,311 West African ancestry male non-smokers	NA	5q32	MIR143HG, CSNK1A1	rs10454990-C	NR	5E-6		4.558	NR z score increase	Illumina [7839440] (imputed)	N
1721	chr5	148904091	148904092	rs10058728	21642993	Wu C	2011-06-05	Nat Genet	Genome-wide association study identifies three new susceptibility loci for esophageal squamous-cell carcinoma in Chinese populations.	Esophageal cancer	2,031 Han Chinese ancestry cases, 2,044 Han Chinese ancestry controls	3,986 Han Chinese ancestry cases, 4,157 Han Chinese ancestry controls	5q32	CSNK1A1	rs10058728-T	0.98	5E-9		2.04	[1.61-2.56]	Affymetrix [666141]	N
1721	chr5	148948491	148948492	rs398084552	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	5q32		rs398084552-A	NR	2E-8		0.014	[0.0091-0.0189] unit increase	Affymetrix, Illumina [20536605] (imputed)	N
1721	chr5	149026401	149026402	rs6866110	30456811	Moss LC	2018-11-19	Genet Epidemiol	Using Bayes model averaging to leverage both gene main effects and G x  E interactions to identify genomic regions in genome-wide association studies.	Asthma x air pollution interaction (2df)	606 Hispanic cases, 792 Hispanic controls, 643 European ancestry cases, 959 European ancestry controls	NA	5q32	NR	rs6866110-?	NR	3E-7				NR [6212909] (imputed)	N
1722	chr5	149036975	149036976	rs17710780	23377640	GENDEP Investigators	2013-02-01	Am J Psychiatry	Common genetic variation and antidepressant efficacy in major depressive disorder: a meta-analysis of three genome-wide pharmacogenetic studies.	Major depressive disorder	Up to 2,256 European ancestry cases	NA	5q32	FLJ41603	rs17710780-T	0.86	4E-6	(remission - 12 weeks)	1.662	[1.45-1.88]	Affymetrix, Illumina [1200000] (imputed)	N
1722	chr5	149050080	149050081	rs188438965	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Deep white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	5q32	intergenic	rs188438965-A	0.15	4E-6		0.0391	[0.022-0.056] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1722	chr5	149131096	149131097	rs56369113	32602732	Baldassari AR	2020-06-30	Circ Genom Precis Med	Multi-ethnic Genome-wide Association Study of Decomposed Cardioelectric Phenotypes Illustrates Strategies to Identify and Characterize Evidence of Shared Genetic Effects for Complex Traits.	Electrocardiographic traits (multivariate)	17,873 European ancestry individuals, 12,749 Hispanic individuals, 5,408 African American individuals, 315 Chinese-American individuals	NA	5q32	PPARGC1B	rs56369113-?	NR	2E-7				Affymetrix, Illumina [22000000] (imputed)	N
1722	chr5	149142066	149142067	rs9285640	22890011	Frazier-Wood AC	2012-08-09	Pharmacogenet Genomics	Genome-wide association study indicates variants associated with insulin signaling and inflammation mediate lipoprotein responses to fenofibrate.	Response to fenofibrate	817 European ancestry individuals	NA	5q32	PPARC1B	rs9285640-G	NR	3E-7	(HDL diameter)	29.95	[18.62-41.28] unit decrease	Affymetrix [~ 2543887] (imputed)	N
1722	chr5	149150670	149150671	rs13174179	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	5q32		rs13174179-?	NR	3E-10				NR [~ 8900000] (imputed)	N
1723	chr5	149164376	149164377	rs79204961	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Deep white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	5q32	PPARGC1B	rs79204961-T	0.1247	5E-6		0.0403	[0.023-0.058] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1723	chr5	149191546	149191547	rs78814834	32701715	Zhang Y	2020-07-21	J Bone Joint Surg Am	PPARGC1B Is Associated with Nontraumatic Osteonecrosis of the Femoral Head: A Genomewide Association Study on a Chart-Reviewed Cohort.	Nontraumatic osteonecrosis of the femoral head	118 European ancestry cases, 56,811 European ancestry controls	NA	5q32	PPARGC1B	rs78814834-T	0.042	1E-6		2.86	[1.87-4.38]	Illumina [3905175] (imputed)	N
1723	chr5	149192845	149192846	rs17110447	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Keratinocyte cancer (MTAG)	at least 18,538 European ancestry cases, at least 340,302 European ancestry controls	NA	5q32	PPARGC1B	rs17110447-A	0.724311	2E-9		1.0638298	[1.04-1.08]	Affymetrix [7600000] (imputed)	N
1723	chr5	149194484	149194485	rs251468	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	5q32		rs251468-T	NR	1E-10		0.0154	[0.011-0.02] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
1723	chr5	149194484	149194485	rs251468	29895819	Endo C	2018-06-12	Sci Rep	Genome-wide association study in Japanese females identifies fifteen novel skin-related trait associations.	Freckles	7,148 Japanese ancestry female cases, 4,034 Japanese ancestry female controls	NA	5q32	PPARGC1B	rs251468-C	0.82	1E-21		1.4492754	[1.33-1.56]	Affymetrix [536506]	N
1723	chr5	149194484	149194485	rs251468	29895819	Endo C	2018-06-12	Sci Rep	Genome-wide association study in Japanese females identifies fifteen novel skin-related trait associations.	Age spots	3,815 Japanese ancestry female cases, 7,438 Japanese ancestry female controls	NA	5q32	PPARGC1B	rs251468-C	0.82	6E-12		1.2987013	[1.2-1.39]	Affymetrix [536506]	N
1723	chr5	149195602	149195603	rs251466	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Sunburns	approximately 344,000 European ancestry individuals	NA	5q32		rs251466-?	NR	5E-30				NR [~ 8900000] (imputed)	N
1723	chr5	149196233	149196234	rs251464	30429480	Duffy DL	2018-11-14	Nat Commun	Novel pleiotropic risk loci for melanoma and nevus density implicate multiple biological pathways.	Nevus count or cutaneous melanoma	52,506 European ancestry individuals, 12,874 European ancestry cases, 23,203 European ancestry controls	NA	5q32	PPARGC1B	rs251464-?	NR	2E-9				Affymetrix, Illumina [7850345] (imputed)	N
1723	chr5	149196233	149196234	rs251464	30429480	Duffy DL	2018-11-14	Nat Commun	Novel pleiotropic risk loci for melanoma and nevus density implicate multiple biological pathways.	Nevus count	52,506 European ancestry individuals	NA	5q32	PPARGC1B	rs251464-?	NR	5E-7	(fixed effects)			Affymetrix, Illumina [up to 31337615] (imputed)	N
1723	chr5	149196233	149196234	rs251464	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Low tan response	46,768 European ancestry low tanning cases, 74,528 European ancestry moderate and high tanning controls	15,547 European ancestry low tanning  cases, 39,835 European moderate and high tanning ancestry controls	5q32	PPARGC1B	rs251464-C	NR	2E-9		0.06	[0.011-0.109] unit decrease	Affymetrix [8351141] (imputed)	N
1723	chr5	149196233	149196234	rs251464	27723757	Jin Y	2016-11-01	Nat Genet	Genome-wide association studies of autoimmune vitiligo identify 23 new risk loci and highlight key pathways and regulatory variants.	Vitiligo	2,853 European ancestry cases and 37,405 European ancestry controls	1,827 European ancestry cases and 2,181 European ancestry controls	5q32	PPARGC1B	rs251464-?	NR	8E-8		1.155	NR	Illumina [8966411] (imputed)	N
1723	chr5	149196681	149196682	rs109077	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Basal cell carcinoma	31,787 European ancestry cases, 619,351 European ancestry controls	NA	5q32	PPARGC1B	rs109077-T	0.679104	3E-9		1.06	[1.04-1.07]	Affymetrix, Illumina [up to 9061544] (imputed)	N
1723	chr5	149210847	149210848	rs32579	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	5q32		rs32579-?	NR	1E-6		0.942328	[0.92-0.97]	NR [685523]	N
1723	chr5	149210847	149210848	rs32579	32835660	Shin JG	2020-08-21	J Invest Dermatol	Genome-wide association analysis of 17,019 Korean women identifies variants associated with facial pigmented spots.	Facial pigmentation measurement (polar light)	11,079 Korean women	5,940 Korean women	5q32	PPARGC1B	rs32579-T	0.297	4E-31		1.06	unit decrease	Illumina [366864] (imputed)	N
1723	chr5	149210847	149210848	rs32579	32835660	Shin JG	2020-08-21	J Invest Dermatol	Genome-wide association analysis of 17,019 Korean women identifies variants associated with facial pigmented spots.	Facial pigmentation measurement (UV light)	11,079 Korean women	5,940 Korean women	5q32	PPARGC1B	rs32579-T	0.297	9E-42		1.56	unit decrease	Illumina [366864] (imputed)	N
1723	chr5	149210847	149210848	rs32579	19340012	Nan H	2009-04-02	J Invest Dermatol	Genome-wide association study of tanning phenotype in a population of European ancestry.	Tanning	2,287 European ancestry female individuals	870 European ancestry female individuals	5q32	PPARGC1B	rs32579-A	NR	4E-6		0.11	[0.07-0.15] tanning ability score decrease	Illumina [528173]	N
1723	chr5	149211867	149211868	rs32578	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Nevus count or cutaneous melanoma	36,760 European ancestry cutaneous melanoma cases, 375,188 European ancestry controls, 12,930 European ancestry individuals, 52,847 individuals	NA	5q32	MIR378A	rs32578-G	0.658392	5E-21				Affymetrix, Illumina [NR] (imputed)	N
1723	chr5	149211867	149211868	rs32578	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous malignant melanoma	36,760 European ancestry cases, 375,188 European ancestry controls	NA	5q32	PPARGC1B	rs32578-G	0.6584	7E-17		1.0903	NR	Affymetrix, Illumina [NR] (imputed)	N
1723	chr5	149211867	149211868	rs32578	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	5q32	PPARGC1B	rs32578-G	0.690984	1E-10		0.0133241	[0.0093-0.0174] unit decrease	Affymetrix [NR] (imputed)	N
1723	chr5	149211867	149211868	rs32578	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	5q32	PPARGC1B	rs32578-G	0.691042	6E-9		0.0123744	[0.0082-0.0165] unit decrease	Affymetrix [NR] (imputed)	N
1723	chr5	149212242	149212243	rs7732671	32232851	Deguchi H	2020-03-30	Br J Haematol	Novel exomic rare variants associated with venous thrombosis.	Venous thromboembolism	104 European ancestry cases, 211 European ancestry controls	NA	5q32	PPARGC1	rs7732671-?	0.083	4E-6				Illumina [308166]	N
1723	chr5	149213455	149213456	rs32576	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	5q32	PPARGC1B	rs32576-G	0.391	5E-6	(Estradiol )	0.03	[NR] pg/mL increase	Illumina [899892]	N
1724	chr5	149298807	149298808	rs4705098	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	5q32		rs4705098-T	NR	7E-13		0.012	[0.0087-0.0153] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1724	chr5	149322240	149322241	rs7717774	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5q32		rs7717774-?	NR	6E-14				NR [~ 8900000] (imputed)	N
1724	chr5	149323457	149323458	rs77409096	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 21, depth of nasal alae)	2,187 European ancestry individuals	NA	5q32	NR	rs77409096-G	0.0227	3E-6		0.48	[0.28-0.68] unit increase	Illumina [10677593] (imputed)	N
1724	chr5	149345974	149345975	rs245051	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	5q32	SLC26A2	rs245051-A	0.586301	1E-9		0.0123068	[0.0083-0.0163] unit increase	Affymetrix [NR] (imputed)	N
1724	chr5	149366713	149366714	rs17711997	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	5q32	NR	rs17711997-C	NR	3E-9		0.0204	[0.014-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
1724	chr5	149366713	149366714	rs17711997	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	5q32		rs17711997-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1724	chr5	149377118	149377119	rs13153453	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	5q32	TIGD6	rs13153453-A	0.5221	2E-11		0.015309208	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1724	chr5	149387617	149387617	rs201770841	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	5q32	NR	rs201770841-TTC	NR	3E-9		0.0186	[0.013-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
1724	chr5	149404178	149404179	rs35341726	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	5q32	NR	rs35341726-?	NR	5E-8				Affymetrix [~ 8270000] (imputed)	N
1724	chr5	149406732	149406733	rs2304069	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	5q32	NR	rs2304069-T	NR	1E-11		0.0202	[0.014-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
1724	chr5	149406732	149406733	rs2304069	20041166	Fellay J	2009-12-24	PLoS Genet	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	5q32	NR	rs2304069-?	NR	7E-6	(progression)			Illumina [NR]	N
1724	chr5	149408580	149408581	rs55862167	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	5q32	HMGXB3	rs55862167-G	0.626314	7E-16		0.024604019	[0.019-0.031] unit increase	Affymetrix [93095623] (imputed)	N
1724	chr5	149410954	149410955	rs72832129	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	5q32	HMGXB3	rs72832129-A	0.0231758689356576	1E-6	(G_Lactococcus_RNT)	0.818647	[0.49-1.15] unit increase	Illumina [7711310] (imputed)	N
1725	chr5	149433119	149433120	rs13117	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5q32		rs13117-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1725	chr5	149433400	149433400	rs3216780	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	5q32	CSF1R	rs3216780-GC	0.60289	1E-17		0.019475443	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1725	chr5	149433400	149433400	rs3216780	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	5q32	CSF1R	rs3216780-G	0.396996	5E-67		0.04098525	[0.036-0.046] unit increase	Affymetrix [93095623] (imputed)	N
1725	chr5	149433400	149433400	rs3216780	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	5q32	CSF1R	rs3216780-GC	0.602887	2E-10		0.014478118	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
1725	chr5	149433400	149433400	rs3216780	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	5q32	CSF1R	rs3216780-GC	0.6039	3E-20		0.03369793	[0.027-0.041] unit increase	Affymetrix [~ 2500000] (imputed)	N
1725	chr5	149433400	149433400	rs3216780	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	5q32	CSF1R	rs3216780-GC	0.6039	1E-12		0.02606943	[0.019-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
1725	chr5	149433400	149433400	rs3216780	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	5q32	CSF1R	rs3216780-GC	0.6038	8E-21		0.03435342	[0.027-0.042] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1725	chr5	149439043	149439044	rs2027798	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling hurt	372,047 European ancestry individuals	NA	5q32	SLC26A2	rs2027798-T	0.419103	1E-8		5.69	z score decrease	NR [10847151] (imputed)	N
1725	chr5	149442778	149442779	rs11738211	33491795	Timmer T	2021-01-25	Vox Sang	Genetic determinants of ferritin, haemoglobin levels and haemoglobin trajectories: results from Donor InSight.	Hemoglobin levels	2,649 European ancestry individuals	NA	5q32	CSF1R	rs11738211-C	0.073	2E-6		0.15	[0.21-0.09] unit decrease	Affymetrix [7435577] (imputed)	N
1725	chr5	149443297	149443298	rs216140	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	5q32	CSF1R	rs216140-T	0.74734375	8E-6	(CSF1R, 13682_47_3)	0.1249668	[0.07-0.18] unit decrease	Illumina [> 1000000] (imputed)	N
1725	chr5	149443993	149443994	rs216141	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	5q32		rs216141-T	NR	1E-13		0.0154	[0.011-0.02] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
1725	chr5	149443993	149443994	rs216141	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	5q32	CSF1R	rs216141-C	0.28	1E-9		6.05	z-score increase	Affymetrix [4314223] (imputed)	N
1725	chr5	149445986	149445987	rs7719910	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	5q32	NR	rs7719910-T	NR	8E-12		0.0254	[0.018-0.033] unit decrease	Affymetrix [9000000] (imputed)	N
1725	chr5	149446486	149446487	rs216148	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	334,468 European ancestry, NR ancestry individuals	NA	5q32		rs216148-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1725	chr5	149447114	149447118	rs148801861	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	5q32	CSF1R	rs148801861-C	0.067059	6E-12		0.03131915	[0.022-0.04] unit decrease	Affymetrix [93095623] (imputed)	N
1725	chr5	149458828	149458829	rs2569075	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	5q32	CSF1R	rs2569075-A	0.548531	2E-19		0.026917046	[0.021-0.033] unit increase	Affymetrix [93095623] (imputed)	N
1725	chr5	149460541	149460542	rs56048668	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	5q32	NR	rs56048668-C	NR	3E-9		0.0919	[0.062-0.122] unit increase	Affymetrix [9000000] (imputed)	N
1725	chr5	149461481	149461482	rs182185394	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	5q32	CSF1R	rs182185394-C	0.00209899999999996	9E-10		0.15630674	[0.11-0.21] unit increase	Affymetrix [93095623] (imputed)	N
1725	chr5	149464107	149464108	rs112661564	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	5q32		rs112661564-T	NR	2E-10		0.0147	[0.01-0.019] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
1725	chr5	149464107	149464108	rs112661564	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	5q32	CSF1R	rs112661564-T	0.3018	8E-25		0.04043029	[0.033-0.048] unit increase	Affymetrix [~ 2500000] (imputed)	N
1725	chr5	149464107	149464108	rs112661564	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	5q32	CSF1R	rs112661564-T	0.302	2E-19		0.03550029	[0.028-0.043] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1725	chr5	149467662	149467663	rs6874087	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	5q32		rs6874087-G	0.698	2E-19				Affymetrix [10369434] (imputed)	N
1725	chr5	149467662	149467663	rs6874087	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	5q32		rs6874087-G	0.698	7E-28				Affymetrix [10369434] (imputed)	N
1725	chr5	149467662	149467663	rs6874087	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	5q32	CSF1R	rs6874087-A	0.302041	2E-84		0.04813466	[0.043-0.053] unit increase	Affymetrix [93095623] (imputed)	N
1725	chr5	149467662	149467663	rs6874087	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	5q32	CSF1R	rs6874087-A	0.302022	2E-63		0.041721836	[0.037-0.047] unit increase	Affymetrix [93095623] (imputed)	N
1725	chr5	149467662	149467663	rs6874087	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	5q32	CSF1R	rs6874087-A	0.3018	4E-23		0.03869355	[0.031-0.046] unit increase	Affymetrix [~ 2500000] (imputed)	N
1725	chr5	149479646	149479647	rs11746309	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	5q32	CSF1R, RPL7P1, Y_RNA	rs11746309-A	0.2848546	1E-13	(EA, Platelet-derived growth factor receptor beta)	0.3787	[0.28-0.48] unit decrease	Affymetrix [509946]	N
1725	chr5	149498871	149498872	rs3832325	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	5q32	PDGFRB	rs3832325-A	0.3164	1E-54		0.06002145	[0.052-0.068] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1725	chr5	149499671	149499672	rs246395	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	5q32	PDGFRB	rs246395-C	0.3279	2E-46		0.05458993	[0.047-0.062] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1725	chr5	149499671	149499672	rs246395	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	5q32	PDGFRB	rs246395-C	0.328	7E-36		0.0478237	[0.04-0.055] unit increase	Affymetrix [~ 2500000] (imputed)	N
1725	chr5	149500235	149500236	rs193549	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	5q32		rs193549-C	0.677	4E-44				Affymetrix [10369434] (imputed)	N
1725	chr5	149500235	149500236	rs193549	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	5q32	PDGFRB	rs193549-T	0.322937	1E-128		0.058148567	[0.053-0.063] unit decrease	Affymetrix [93095623] (imputed)	N
1725	chr5	149501802	149501803	rs17656204	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	5q32		rs17656204-T	NR	5E-85		0.0455	[0.041-0.05] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
1725	chr5	149501802	149501803	rs17656204	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	5q32		rs17656204-C	0.677	6E-52				Affymetrix [10369434] (imputed)	N
1725	chr5	149501802	149501803	rs17656204	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	5q32	PDGFRB	rs17656204-T	0.322965	1E-129		0.058076076	[0.053-0.063] unit decrease	Affymetrix [93095623] (imputed)	N
1725	chr5	149501802	149501803	rs17656204	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q32	NR	rs17656204-T	0.288792	5E-158				Affymetrix, Illumina [23467995] (imputed)	N
1725	chr5	149501802	149501803	rs17656204	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	5q32	NR	rs17656204-T	0.321977	7E-156		0.054151	[0.05-0.058] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1725	chr5	149505623	149505624	rs3756309	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	5q32	PDGFRB	rs3756309-C	0.2916667	2E-26	(EA, Platelet-derived growth factor receptor beta)	0.5077	[0.42-0.6] unit decrease	Affymetrix [509946]	N
1725	chr5	149508474	149508475	rs3816018	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5q32	NR	rs3816018-T	0.55	1E-428	(Platelet-derived growth factor receptor beta, PDGFRB.3459.49.2)	0.92	[0.88-0.96] unit increase	Affymetrix [10572788] (imputed)	N
1725	chr5	149508543	149508544	rs2304058	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PDGFB	5,367 Icelandic ancestry individuals	NA	5q32		rs2304058-C	0.4768	2E-15		0.153135	[0.12-0.19] unit decrease	Illumina [7506463] (imputed)	N
1725	chr5	149508543	149508544	rs2304058	33110245	Ruotsalainen SE	2020-10-27	Eur J Hum Genet	An expanded analysis framework for multivariate GWAS connects inflammatory biomarkers to functional variants and disease.	Inflammatory biomarkers (multivariate analysis)	6,890 Finnish ancestry individuals	NA	5q32	PDGFRB	rs2304058-?	NR	1E-15				Illumina [11329225] (imputed)	N
1725	chr5	149508543	149508544	rs2304058	31679650	Nath AP	2019-10-30	Am J Hum Genet	Multivariate Genome-Wide Association Analysis of a Cytokine Network Reveals Variants with Widespread Immune, Haematological, and Cardiometabolic Pleiotropy.	Cytokine network levels (multivariate analysis)	9,263 Finnish ancestry individuals	NA	5q32	PDGFRB	rs2304058-?	NR	4E-9				Illumina [6022229] (imputed)	N
1725	chr5	149508543	149508544	rs2304058	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5q32	PDGFRB	rs2304058-G	0.557	2E-458	(Platelet-derived growth factor receptor beta, PDGFRB.3459.49.2)	0.93	[0.89-0.97] unit increase	Affymetrix [10572788] (imputed)	N
1725	chr5	149515073	149515074	rs740750	32492067	Ruffieux H	2020-06-03	PLoS Comput Biol	A fully joint Bayesian quantitative trait locus mapping of human protein abundance in plasma.	Protein quantitative trait loci	394 European ancestry individuals	548 European ancestry individuals	5q32	NR	rs740750-?	NR	2E-113	(PDGF Rb)			Illumina [~ 4000000] (imputed)	N
1725	chr5	149515073	149515074	rs740750	28031287	Sasayama D	2016-11-26	Hum Mol Genet	Genome-wide quantitative trait loci mapping of the human cerebrospinal fluid proteome.	Cerebrospinal fluid biomarker levels	133 Japanese ancestry individuals.	NA	5q32	NR	rs740750-A	NR	1E-33	(Platelet-derived growth factor receptor beta)			Illumina [514227]	N
1725	chr5	149516479	149516480	rs2240781	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	5q32	NR	rs2240781-?	NR	5E-161	(EA, Platelet-derived growth factor receptor beta)			Affymetrix [509946]	N
1725	chr5	149517234	149517235	rs4705415	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	5q32	PDGFRB	rs4705415-G	0.5403125	9E-588	(PDGFRB, 3459_49_2)	1.0517536	[1.02-1.08] unit decrease	Illumina [> 1000000] (imputed)	N
1725	chr5	149519522	149519523	rs111884151	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Monocyte chemoattractant protein-1 levels	8,293 Finnish ancestry individuals	NA	5q32	NR	rs111884151-C		8E-6		0.1816	[0.1-0.26] SD units increase	NR [10700000] (imputed)	N
1725	chr5	149521237	149521238	rs17708574	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	5q32	PDGFRB	rs17708574-A	0.1144578	2E-13	(Platelet-derived growth factor receptor beta)	0.5147	[0.38-0.65] unit increase	Affymetrix [509946]	N
1725	chr5	149532106	149532107	rs3776081	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	5q32	PDGFRB	rs3776081-C	0.318593	3E-113	(Platelet-derived growth factor receptor beta)	0.9608	[0.89-1.03] unit decrease	Affymetrix [509946]	N
1725	chr5	149542395	149542396	rs117193381	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	5q32	CDX1	rs117193381-G	0.0291545411873503	4E-6	(G_unclassified_P_Firmicutes_HB)	0.97904	[0.56-1.39] unit decrease	Illumina [7711310] (imputed)	N
1725	chr5	149546425	149546426	rs2302274	33632709	Huyghe JR	2021-02-25	Gut	Genetic architectures of proximal and distal colorectal cancer are partly distinct.	Rectal cancer	16,212 European ancestry cases, 64,159 European ancestry controls	NA	5q32	CDX1	rs2302274-G	0.4782	2E-6		1.07	1.04-1.10	Affymetrix, Illumina [11358342] (imputed)	N
1725	chr5	149546425	149546426	rs2302274	33632709	Huyghe JR	2021-02-25	Gut	Genetic architectures of proximal and distal colorectal cancer are partly distinct.	Distal/Left-sided colorectal cancer	30,588 European ancestry cases, 64,159 European ancestry controls	NA	5q32	CDX1	rs2302274-G	0.478	5E-9		1.07	[1.04-1.09]	Affymetrix, Illumina [11947015] (imputed)	N
1725	chr5	149546425	149546426	rs2302274	33632709	Huyghe JR	2021-02-25	Gut	Genetic architectures of proximal and distal colorectal cancer are partly distinct.	Distal colorectal cancer	14,376 European ancestry cases, 64,159 European ancestry controls	NA	5q32	CDX1	rs2302274-G	0.4782	5E-6		1.07	[1.04-1.10]	Affymetrix, Illumina [11353757] (imputed)	N
1726	chr5	149577918	149577919	rs758593	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Recurrent major depressive disorder x sex interaction	5,314 European ancestry cases, 10,149 European ancestry controls	NA	5q32	SLC6A7	rs758593-A	0.6091	4E-6		0.163	[0.094-0.232] unit increase	NR [NR] (imputed)	N
1726	chr5	149579856	149579857	rs2286639	33731350	Nandakumar P	2021-03-17	Sci Adv	Nuclear genome-wide associations with mitochondrial heteroplasmy.	Mitochondrial heteroplasmy measurement	982,072 European ancestry individuals	NA	5q32	SLC6A7	rs2286639-G	0.208	1E-8		0.006	[0.004-0.008] unit decrease	NR [57525634] (imputed)	N
1726	chr5	149605993	149605994	rs17656349	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Ulcerative colitis	12,366 European and unknown ancestry cases, 33,609 European and unknown ancestry controls	NA	5q32	SLC6A7, CAMK2A	rs17656349-T	0.466	2E-8		1.09	[1.06-1.13]	Illumina [9578670] (imputed)	N
1726	chr5	149605993	149605994	rs17656349	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	5q32	SLC6A7, CAMK2A	rs17656349-?		5E-9				Illumina [9725440] (imputed)	N
1726	chr5	149623364	149623365	rs4958456	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	5q32	CAMK2A	rs4958456-A	0.092	5E-7	(Urinary free dopamine )	0.04	[NR] nmol/d increase	Illumina [899892]	N
1726	chr5	149645184	149645185	rs72804002	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	5q32	CAMK2A	rs72804002-T	0.0510966074395804	8E-6	(G_unclassified_P_Firmicutes_HB)	0.714651	[0.4-1.03] unit decrease	Illumina [7711310] (imputed)	N
1726	chr5	149647132	149647133	rs6896288	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5q32	ARSI	rs6896288-?	NR	9E-7	(TAG 52:6)	0.8551041	[0.51-1.2] unit increase	Affymetrix [at least 2500000] (imputed)	N
1726	chr5	149649752	149649753	rs4958443	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota (bacterial taxa)	858 Metropolitan French ancestry individuals	NA	5q32	NR	rs4958443-?	NR	2E-8	(Bifidobacterium)	3.2387302	[2.83-3.65]	Illumina [5293637] (imputed)	N
1726	chr5	149649752	149649753	rs4958443	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota (bacterial taxa)	858 Metropolitan French ancestry individuals	NA	5q32	NR	rs4958443-?	NR	2E-8	(Bifidobacteriaceae)	3.2823048	[2.87-3.70]	Illumina [5293637] (imputed)	N
1726	chr5	149649752	149649753	rs4958443	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota (bacterial taxa)	858 Metropolitan French ancestry individuals	NA	5q32	NR	rs4958443-?	NR	2E-8	(Actinobacteridae)	3.2823048	[2.87-3.70]	Illumina [5293637] (imputed)	N
1726	chr5	149677817	149677818	rs77943970	28654678	Mandage R	2017-06-27	PLoS One	Genetic factors affecting EBV copy number in lymphoblastoid cell lines derived from the 1000 Genome Project samples.	Epstein-Barr virus copy number in lymphoblastoid cell lines	389 East Asian ancestry individuals, 189 South Asian ancestry individuals, 492 European ancestry individuals, 467 Sub-Saharan African ancestry individuals, 59 African American individuals, 157 Hispanic/Latino individuals	NA	5q32	ARSI	rs77943970-?	NR	7E-6	(EA)			NR [at least 880000]	N
1727	chr5	149693527	149693528	rs56950939	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	5q32	NR	rs56950939-?	NR	1E-6		4.861	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1727	chr5	149715263	149715264	rs6579789	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5q32		rs6579789-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1727	chr5	149784318	149784319	rs115854050	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	5q33.1	CD74	rs115854050-A	0.996	4E-6	(AA)	0.119	unit increase	Illumina [NR] (imputed)	N
1728	chr5	149825869	149825870	rs13177918	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue/subcutaneous adipose tissue ratio	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	5q33.1	RPS14	rs13177918-T	0.20	8E-6	(women)			Affymetrix, Illumina [2500000] (imputed)	N
1728	chr5	149868325	149868326	rs12519827	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	5q33.1	NDST1	rs12519827-A	0.084517	2E-9		0.023865528	[0.016-0.032] unit increase	Affymetrix [93095623] (imputed)	N
1728	chr5	149875730	149875731	rs3846706	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	5q33.1		rs3846706-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1728	chr5	149884423	149884424	rs17726577	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	5q33.1		rs17726577-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1728	chr5	149885168	149885169	rs113681861	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	5q33.1	NR	rs113681861-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
1728	chr5	149911218	149911219	rs2545339	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	5q33.1		rs2545339-?	NR	9E-8				NR [~ 8900000] (imputed)	N
1728	chr5	149914400	149914401	rs2545341	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	5q33.1	NDST1	rs2545341-T	0.3691	3E-9		0.0116	[0.0077-0.0155] unit decrease	Affymetrix [18391927] (imputed)	N
1728	chr5	149939421	149939422	rs35413298	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	5q33.1	NDST1	rs35413298-G	0.6834375	2E-6	(NDST1, 6927_7_3)	0.123065755	[0.072-0.174] unit increase	Illumina [> 1000000] (imputed)	N
1729	chr5	149972793	149972794	rs6891880	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (anti-inflammatory and antirheumatic products, non-steroids)	74,150 European ancestry cases, 90,370 European ancestry controls	NA	5q33.1	SYNPO	rs6891880-G	0.42715	5E-8		0.03849182	[0.025-0.052] unit decrease	Affymetrix [7288503] (imputed)	N
1729	chr5	150036118	150036119	rs41364946	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	5q33.1		rs41364946-G	NR	4E-9		0.0377	[0.025-0.05] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
1729	chr5	150036118	150036119	rs41364946	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q33.1	NR	rs41364946-G	0.0228401	6E-10				Affymetrix, Illumina [24558453] (imputed)	N
1729	chr5	150036118	150036119	rs41364946	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	5q33.1		rs41364946-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1729	chr5	150038671	150038672	rs14458	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	5q33.1	NR	rs14458-C	0.022619	6E-12		0.044224	[0.032-0.057] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
1729	chr5	150055164	150055165	rs147339561	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (hospitalized covid vs population)	613 European ancestry cases, 680,416 European ancestry controls, 140 Hispanic or Latin American cases, 94,327 Hispanic or Latin American controls, 49 Black or African American cases, 22,410 Black or African American controls	NA	5q33.1		rs147339561-?	NR	8E-6		1.7496824	[0.99-2.51] unit increase	Illumina [9875426] (imputed)	N
1730	chr5	150110238	150110239	rs35772018	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung adenocarcinoma	11,273 European ancestry cases,  55,483 European ancestry controls	NA	5q33.1	DCTN4	rs35772018-C	0.017398699	8E-8		1.4609038	[1.272305966-1.677458102]	Illumina [10439017] (imputed)	N
1730	chr5	150111617	150111618	rs7731017	28779025	Alberts R	2017-08-04	Gut	Genetic association analysis identifies variants associated with disease progression in primary sclerosing cholangitis.	Cholangiocarcinoma in primary sclerosing cholangitis	188 European ancestry cases, 3,147 European ancestry controls	NA	5q33.1	LOC102546298, NDST1, SYNPO, MYOZ3, RBM22, DCTN4, SMIM3, IRGM, ZNF300, ZNF300P1	rs7731017-G	0.011	1E-6		4.81	[2.57-9.02]	Illumina [130422]	N
1730	chr5	150149834	150149835	rs187460213	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	5q33.1	Intergenic	rs187460213-G	0.998	4E-6	(AA)	0.237	unit increase	Illumina [NR] (imputed)	N
1731	chr5	150223386	150223387	rs13361189	17554261	Parkes M	2007-06-06	Nat Genet	Sequence variants in the autophagy gene IRGM and multiple other replicating loci contribute to Crohn's disease susceptibility.	Crohn's disease	1,748 cases, 2,938 controls	1,182 European ancestry cases, 2,024 European ancestry controls	5q33.1	IRGM	rs13361189-?	0.08	2E-10		1.38	[1.15-1.66]	Affymetrix [see WTCCC]	N
1731	chr5	150229065	150229066	rs11749391	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	5q33.1	IRGM	rs11749391-?	NR	2E-42	(subset analysis)			Illumina [130052]	N
1731	chr5	150238520	150238521	rs147018773	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Crohn's disease vs rheumatoid arthritis (ordinary least squares (OLS))	5,956 Crohn's disease cases, 8,875 rheumatoid arthritis cases	14,594 Crohn's disease cases, 5,486 rheumatoid arthritis cases	5q33.1		rs147018773-?	NR	2E-9		0.05	NR unit increase	NR [5890016] (imputed)	N
1731	chr5	150240075	150240076	rs1000113	17554300	Wellcome Trust Case Control Consortium	2007-06-07	Nature	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Crohn's disease	1,748 European ancestry cases, 2,938 European ancestry controls	(see Parkes 2007)	5q33.1	IRGM	rs1000113-T	0.07	3E-7		1.54	[1.31-1.82]	Affymetrix [469557]	N
1731	chr5	150258866	150258867	rs11747270	18587394	Barrett JC	2008-06-29	Nat Genet	Genome-wide association defines more than 30 distinct susceptibility loci for Crohn's disease.	Crohn's disease	3,230 European ancestry cases, 4,829 European ancestry controls	1,339 European ancestry trios, 2,325 European ancestry cases, 1,809 European ancestry controls	5q33.1	IRGM	rs11747270-G	0.09	3E-16		1.33	[NR]	Affymetrix, Illumina [635547] (imputed)	N
1731	chr5	150270419	150270420	rs7714584	21102463	Franke A	2010-11-21	Nat Genet	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry trios	5q33.1	IRGM	rs7714584-G	0.088	8E-19		1.37	[1.28-1.47]	Affymetrix, Illumina [953241] (imputed)	N
1731	chr5	150277908	150277909	rs11741861	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	5q33.1	RPS14, TCOF1, CD74, NDST1, SYNPO, MYOZ3, DCTN4, SMIM3, AC010441.1, IRGM, ZNF300, GPX3, ANXA6, SLC36A3, SLC36A2, RBM22, TNIP1, CCDC69, GM2A	rs11741861-?		3E-15				Illumina [9725440] (imputed)	N
1731	chr5	150277908	150277909	rs11741861	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	5q33.1	RPS14, TCOF1, CD74, NDST1, SYNPO, MYOZ3, DCTN4, SMIM3, AC010441.1, IRGM, ZNF300, GPX3, ANXA6, SLC36A3, SLC36A2, RBM22, TNIP1, CCDC69, GM2A	rs11741861-?		2E-19				Illumina [9560910] (imputed)	N
1731	chr5	150277908	150277909	rs11741861	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	5q33.1	NR	rs11741861-G	0.07656	7E-8	(EA)	1.128044	[1.08-1.17]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1731	chr5	150277908	150277909	rs11741861	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	5q33.1	NR	rs11741861-G	0.07656	6E-44	(EA)	1.3292114	[1.29-1.37]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1731	chr5	150277908	150277909	rs11741861	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	5q33.1	TNIP1, IRGM, ZNF300P1	rs11741861-G	0.093	3E-37		1.249	[1.186-1.314]	Affymetrix, Illumina [1230000] (imputed)	N
1731	chr5	150323427	150323428	rs17800987	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	5q33.1	NR	rs17800987-?	NR	2E-31	(EA)			Affymetrix, Illumina [~ 9000000] (imputed)	N
1732	chr5	150341652	150341653	rs2344174	33590662	Heilbronner U	2021-02-15	Am J Med Genet B Neuropsychiatr Genet	"The Heidelberg Five" personality dimensions: Genome-wide associations, polygenic risk for neuroticism, and psychopathology 20 years after assessment.	Emotional lability	3,268 European ancestry individuals	NA	5q33.1	NR	rs2344174-T	0.8566	1E-7		0.1863	[0.12-0.26] unit decrease	Illumina [8348463] (imputed)	N
1732	chr5	150393106	150393107	rs111332265	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Tumor necrosis factor alpha levels	3,454 Finnish ancestry individuals	NA	5q33.1	NR	rs111332265-G		7E-7		0.3766	[0.23-0.52] SD units increase	NR [10700000] (imputed)	N
1732	chr5	150410834	150410835	rs10463311	34873335	van Rheenen W	2021-12-06	Nat Genet	Common and rare variant association analyses in amyotrophic lateral sclerosis identify 15 risk loci with distinct genetic architectures and neuron-specific biology.	Amyotrophic lateral sclerosis	27,205 European ancestry cases, 110,881 European ancestry controls, 2,407 East Asian ancestry cases, 11,775 East Asian ancestry controls	NA			rs10463311-C	NR	3E-10		0.08	[0.06-0.1] unit increase	Illumina [10461755] (imputed)	N
1732	chr5	150410834	150410835	rs10463311	34873335	van Rheenen W	2021-12-06	Nat Genet	Common and rare variant association analyses in amyotrophic lateral sclerosis identify 15 risk loci with distinct genetic architectures and neuron-specific biology.	Amyotrophic lateral sclerosis	27,205 European ancestry cases, 110,881 European ancestry controls	NA	5q33.1		rs10463311-C	0.253	4E-10		0.079	[0.054-0.104] unit increase	Illumina [10461755] (imputed)	N
1732	chr5	150410834	150410835	rs10463311	29566793	Nicolas A	2018-03-21	Neuron	Genome-wide Analyses Identify KIF5A as a Novel ALS Gene.	Amyotrophic lateral sclerosis	20,806 European ancestry cases, 59,804 European ancestry controls	4,159 cases, 18,650 controls	5q33.1	TNIP1	rs10463311-?	0.2479	4E-8	(EA)	1.0869565	[1.05-1.12]	Illumina [10031630] (imputed)	N
1732	chr5	150410893	150410894	rs10463312	29293537	Gorlova OY	2018-01-02	PLoS One	Gene-level association analysis of systemic sclerosis: A comparison of African-Americans and White populations.	Systemic sclerosis	1,833 European ancestry cases, 3,466 European ancestry controls, 291 African American cases, 260 African American controls	NA	5q33.1	TNIP1	rs10463312-?	NR	5E-6	(EA)			Illumina [126270]	N
1732	chr5	150432387	150432388	rs871269	34493870	Wightman DP	2021-09-07	Nat Genet	A genome-wide association study with 1,126,563 individuals identifies new risk loci for Alzheimer's disease.	Late-onset Alzheimer's disease	90,338 cases, 1,036,225 controls	NA	5q33.1		rs871269-?	NR	1E-9				Illumina [NR] (imputed)	N
1732	chr5	150434893	150434894	rs6579837	24097067	Lessard CJ	2013-11-01	Nat Genet	Variants at multiple loci implicated in both innate and adaptive immune responses are associated with Sjogren's syndrome.	Sjogren's syndrome	395 European ancestry cases, 1,975 European ancestry controls	1,243 European ancestry cases, 4,779 European ancestry controls	5q33.1	TNIP1	rs6579837-T	0.09	3E-8		1.43	[1.20-1.71]	Illumina [648937]	N
1732	chr5	150434893	150434894	rs6579837	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis (ACPA-positive)	up to 9,585 European ancestry cases, up to 33,742 European ancestry controls	NA	5q33.1	TNIP1	rs6579837-A	NR	2E-6		1.2062		Illumina [129464] (imputed)	N
1732	chr5	150435644	150435645	rs12516176	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	5q33.1	NR	rs12516176-T	0.72613	3E-11		0.015154	[0.011-0.02] unit decrease	NR [NR]	N
1732	chr5	150438283	150438284	rs4958435	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	5q33.1	NR	rs4958435-T	NR	8E-14		0.0187	[0.014-0.024] unit increase	Affymetrix [9000000] (imputed)	N
1732	chr5	150438476	150438477	rs4958880	30573655	Acosta-Herrera M	2018-12-20	Ann Rheum Dis	Genome-wide meta-analysis reveals shared new loci in systemic seropositive rheumatic diseases.	Systemic seropositive rheumatic diseases (Systemic sclerosis or systemic lupus erythematosus or rheumatoid arthritis or idiopathic inflammatory myopathies)	up to 4,595 European ancestry rheumatoid arthritis cases, up to 3,154 European ancestry systemic lupus erythematosus cases, up to 2,281 European ancestry systemic sclerosis cases, up to 1,674 European ancestry idiopathic inflammatory myopathy cases, 19,704 European ancestry controls	NA	5q33.1	TNIP1	rs4958880-A	NR	1E-11		1.16	[1.10-1.22]	Illumina [6450125] (imputed)	N
1732	chr5	150438987	150438988	rs1422673	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Systemic sclerosis	3,477 European ancestry cases, 22,308 European ancestry controls	NA	5q33.1	TNIP1	rs1422673-T	0.194	1E-8		1.2280027		Illumina [252970]	N
1732	chr5	150438987	150438988	rs1422673	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Rheumatoid arthritis	15,523 European ancestry cases, 22,308 European ancestry controls	NA	5q33.1	TNIP1	rs1422673-T	0.198	2E-6		1.0997517		Illumina [252970]	N
1732	chr5	150438987	150438988	rs1422673	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Autoimmune traits (pleiotropy)	11,489 European ancestry cases with celiac disease, 15,523 European ancestry cases with rheumatoid arthritis, 3,477 European ancestry cases with systemic sclerosis, 6,670 European ancestry cases with type 1 diabetes, 22,308 European ancestry controls	NA	5q33.1	TNIP1	rs1422673-T	NA	2E-9				Illumina [252970]	N
1732	chr5	150440096	150440097	rs2233287	21750679	Allanore Y	2011-07-07	PLoS Genet	Genome-wide scan identifies TNIP1, PSORS1C1, and RHOB as novel risk loci for systemic sclerosis.	Systemic sclerosis	564 European ancestry cases, 1,776 European ancestry controls	1,682 European ancestry cases, 3,926 European ancestry controls	5q33.1	TNIP1	rs2233287-A	0.10	5E-9		1.31	[1.15-1.43]	Illumina [489814]	N
1732	chr5	150445214	150445215	rs10057690	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	5q33.1	TNIP1	rs10057690-?	NR	3E-6	(AA)	1.2	[1.11-1.30]	Illumina [at least 5000000] (imputed)	N
1732	chr5	150448375	150448376	rs1862364	33109212	Chang H	2020-10-28	BMC Med	Genetic architecture of cardiometabolic risks in people living with HIV.	LDL cholesterol levels in HIV infection	3,095 European ancestry individuals, 3,189 African American individuals	NA	5q33.1	TNIP1	rs1862364-?		7E-6	(EA)	0.15747027	[0.089-0.226] unit decrease	Illumina [13620258] (imputed)	N
1732	chr5	150448375	150448376	rs1862364	33109212	Chang H	2020-10-28	BMC Med	Genetic architecture of cardiometabolic risks in people living with HIV.	LDL cholesterol levels in HIV infection	3,095 European ancestry individuals, 3,189 African American individuals	NA	5q33.1	TNIP1	rs1862364-?		7E-6	(African American)	0.15747027	[0.089-0.226] unit decrease	Illumina [13620258] (imputed)	N
1732	chr5	150450235	150450236	rs4958881	23055271	Gregersen PK	2012-07-16	Ann Neurol	Risk for myasthenia gravis maps to a (151) Pro->Ala change in TNIP1 and to human leukocyte antigen-B*08.	Myasthenia gravis	400 European ancestry cases, 5,505 European ancestry controls	249 European ancestry cases, 3,415 European ancestry controls	5q33.1	TNIP1	rs4958881-G	0.09	3E-10		1.73	[1.46-2.06]	Illumina [274256]	N
1732	chr5	150454605	150454606	rs1107239	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	5q33.1		rs1107239-A	NR	1E-8		0.0183	[0.012-0.025] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
1732	chr5	150455671	150455672	rs3792784	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	5q33.1	TNIP1	rs3792784-A	0.9	1E-8		5.73	z-score increase	Affymetrix [4311822] (imputed)	N
1732	chr5	150455731	150455732	rs3792783	31672989	Lopez-Isac E	2019-10-31	Nat Commun	GWAS for systemic sclerosis identifies multiple risk loci and highlights fibrotic and vasculopathy pathways.	Systemic sclerosis	9,095 European ancestry cases, 17,584 European ancestry controls	NA	5q33.1	TNIP1	rs3792783-G	0.16	2E-12		1.2		Illumina [4723365]	N
1732	chr5	150455731	150455732	rs3792783	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	5q33.1	TNIP1	rs3792783-G	0.155	2E-11		0.03317528	[0.023-0.043] unit increase	Affymetrix [~ 2500000] (imputed)	N
1732	chr5	150457484	150457485	rs7708392	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	5q33.1	TNIP1	rs7708392-?	NR	5E-9	(Hispanic)	1.31	[1.20-1.44]	Illumina [at least 5000000] (imputed)	N
1732	chr5	150457484	150457485	rs7708392	26606652	Alarcon-Riquelme ME	2015-11-25	Arthritis Rheumatol	Genome-Wide Association Study in an Amerindian Ancestry Population Reveals Novel Systemic Lupus Erythematosus Risk Loci and the Role of European Admixture.	Systemic lupus erythematosus	862 Native American ancestry-enriched North American cases, 531 Native American ancestry-enriched South American cases, 1,973 Native American ancestry-enriched North American controls, 344 Native American ancestry-enriched South American controls	NA	5q33.1	TNIP1	rs7708392-C	0.499	2E-11		1.76	[1.50-2.07]	Illumina [580483] (imputed)	N
1732	chr5	150457484	150457485	rs7708392	19838195	Gateva V	2009-11-01	Nat Genet	A large-scale replication study identifies TNIP1, PRDM1, JAZF1, UHRF1BP1 and IL10 as risk loci for systemic lupus erythematosus.	Systemic lupus erythematosus	1,310 European ancestry cases, 7,859 European ancestry controls	1,963 European ancestry cases, 4,329 European ancestry controls	5q33.1	TNIP1	rs7708392-C	0.24	4E-13		1.27	[1.10-1.35]	Illumina [~ 2100000] (imputed)	N
1732	chr5	150457770	150457771	rs6889239	27399966	Morris DL	2016-07-11	Nat Genet	Genome-wide association meta-analysis in Chinese and European individuals identifies ten new loci associated with systemic lupus erythematosus.	Systemic lupus erythematosus	1,659 Chinese ancestry cases, 3,398 Chinese ancestry controls, 4,036 European ancestry cases, 6,959 European ancestry controls	3,043 Chinese ancestry cases, 5,074 Chinese ancestry controls, 2,643 European ancestry cases, 9,032 European ancestry controls	5q33.1	TNIP1	rs6889239-?	0.743	3E-6	(Chinese)	1.28	[NR]	NR [6344733] (imputed)	N
1732	chr5	150457770	150457771	rs6889239	27399966	Morris DL	2016-07-11	Nat Genet	Genome-wide association meta-analysis in Chinese and European individuals identifies ten new loci associated with systemic lupus erythematosus.	Systemic lupus erythematosus	1,659 Chinese ancestry cases, 3,398 Chinese ancestry controls, 4,036 European ancestry cases, 6,959 European ancestry controls	3,043 Chinese ancestry cases, 5,074 Chinese ancestry controls, 2,643 European ancestry cases, 9,032 European ancestry controls	5q33.1	TNIP1	rs6889239-?	0.251	2E-18	(EA)	1.32	[NR]	NR [6344733] (imputed)	N
1732	chr5	150457770	150457771	rs6889239	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	NA	5q33.1	TNIP1	rs6889239-C		4E-24		1.33	[NR]	Illumina [> 644674] (imputed)	N
1732	chr5	150458145	150458146	rs10036748	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	5q33.1	TNIP1	rs10036748-T	0.76	6E-26		1.194	[1.16-1.23]	Illumina [11270530] (imputed)	N
1732	chr5	150458145	150458146	rs10036748	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	5q33.1	TNIP1	rs10036748-?	NR	2E-34		1.27	[1.22-1.33]	Illumina [at least 5000000] (imputed)	N
1732	chr5	150458145	150458146	rs10036748	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	2,018 European ancestry cases, 6,925 European ancestry controls	5q33.1	TNIP1	rs10036748-T		1E-45		1.38	[1.32-1.45]	Illumina [644674]	N
1732	chr5	150458145	150458146	rs10036748	25854761	Zuo X	2015-04-09	Nat Commun	Whole-exome SNP array identifies 15 new susceptibility loci for psoriasis.	Psoriasis	11,245 Han Chinese ancestry cases, 11,177 Han Chinese ancestry controls	6,369 Han Chinese ancestry cases, 13,969 Han Chinese ancestry controls	5q33.1	TNIP1	rs10036748-?		4E-9		1.1	1.06-1.13	Illumina [87827]	N
1732	chr5	150458145	150458146	rs10036748	23273568	Yang W	2012-12-27	Am J Hum Genet	Meta-analysis followed by replication identifies loci in or near CDKN1B, TET3, CD80, DRAM1, and ARID5B as associated with systemic lupus erythematosus in Asians.	Systemic lupus erythematosus	1,656 Han Chinese ancestry cases, 3,394 Han Chinese ancestry controls	3,256 Han Chinese ancestry cases, 5,667 Han Chinese ancestry controls, 453 Thai ancestry cases, 963 Thai ancestry controls	5q33.1	TNIP1	rs10036748-T	0.74	3E-6		1.25		Illumina [2100739] (imputed)	N
1732	chr5	150458145	150458146	rs10036748	19838193	Han JW	2009-10-18	Nat Genet	Genome-wide association study in a Chinese Han population identifies nine new susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	1,047 Han Chinese ancestry cases, 1,205 Han Chinese ancestry controls	3,152 Han Chinese ancestry cases, 7,050 Han Chinese ancestry controls	5q33.1	TNIP1	rs10036748-A	0.76	2E-9		1.23	[1.15-1.33]	Illumina [493955]	N
1732	chr5	150461048	150461049	rs960709	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	5q33.1		rs960709-G	NR	5E-13		0.0138	[0.01-0.018] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
1732	chr5	150461048	150461049	rs960709	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	5q33.1	TNIP1	rs960709-G	0.239112	6E-17		0.021755753	[0.017-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1732	chr5	150461048	150461049	rs960709	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	5q33.1	TNIP1	rs960709-G	0.239117	5E-19		0.023164537	[0.018-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
1732	chr5	150461048	150461049	rs960709	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q33.1	NR	rs960709-G	0.322002	1E-22				Affymetrix, Illumina [19872809] (imputed)	N
1732	chr5	150461048	150461049	rs960709	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	5q33.1	NR	rs960709-G	0.239769	4E-23		0.023189	[0.019-0.028] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
1732	chr5	150461048	150461049	rs960709	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	5q33.1		rs960709-?	NR	1E-15				NR [~ 8900000] (imputed)	N
1732	chr5	150461048	150461049	rs960709	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	5q33.1	TNIP1	rs960709-G	0.2382	2E-14		0.03247268	[0.024-0.041] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1732	chr5	150461048	150461049	rs960709	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	5q33.1	TNIP1	rs960709-G	0.2382	7E-14		0.03160719	[0.023-0.04] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1732	chr5	150461048	150461049	rs960709	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	5q33.1	TNIP1	rs960709-G	0.2382	1E-11		0.02882201	[0.021-0.037] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1732	chr5	150461048	150461049	rs960709	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	5q33.1	TNIP1	rs960709-G	0.2382	7E-16		0.03412575	[0.026-0.042] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1732	chr5	150461048	150461049	rs960709	23740937	Martin JE	2013-06-10	Hum Mol Genet	A systemic sclerosis and systemic lupus erythematosus pan-meta-GWAS reveals new shared susceptibility loci.	Systemic lupus erythematosus and Systemic sclerosis	up to 2,761 European ancestry systemic sclerosis cases, 769 European ancestry systemic lupus erythematosus cases, 7,381 European ancestry controls	up to 1,578 European ancestry systemic sclerosis cases, 1,727 European ancestry systemic lupus erythematosus cases, 6,893 European ancestry controls	5q33.1	TNIP1	rs960709-?	NR	2E-8		1.212	[NR]	Illumina [NR]	N
1732	chr5	150464578	150464579	rs75851973	33385400	Patrick MT	2020-12-29	J Invest Dermatol	Causal relationship and shared genetic loci between psoriasis and type 2 diabetes through trans-disease meta-analysis.	Psoriasis or type 2 diabetes (trans-disease meta-analysis)	11,024 European ancestry psoriasis cases, 74,124 European ancestry diabetes cases, 840,342 European ancestry controls	NA		NR	rs75851973-G	NR	3E-35		1.28	NR	NR [8016731] (imputed)	N
1732	chr5	150464640	150464641	rs76956521	26626624	Stuart PE	2015-11-28	Am J Hum Genet	Genome-wide Association Analysis of Psoriatic Arthritis and Cutaneous Psoriasis Reveals Differences in Their Genetic Architecture.	Psoriatic arthritis	1,946 European ancestry cases, 4,934 European ancestry controls	up to 2,883 European ancestry cases, up to 14,179 European ancestry controls		TNIP1, ANXA6	rs76956521-C	NR	3E-23		1.793	NR	Illumina [11532644] (imputed)	N
1732	chr5	150466690	150466691	rs8177833	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	5q33.1	TNIP1	rs8177833-G	0.0551430000000001	3E-13		0.03541474	[0.026-0.045] unit decrease	Affymetrix [93095623] (imputed)	N
1732	chr5	150467188	150467189	rs2233278	33385400	Patrick MT	2020-12-29	J Invest Dermatol	Causal relationship and shared genetic loci between psoriasis and type 2 diabetes through trans-disease meta-analysis.	Psoriasis or type 2 diabetes (trans-disease meta-analysis)(opposite effect)	11,024 European ancestry psoriasis cases, 74,124 European ancestry diabetes cases, 840,342 European ancestry controls	NA	5q33.1	NR	rs2233278-C		5E-30		1.26		NR [8016731] (imputed)	N
1732	chr5	150467188	150467189	rs2233278	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	5q33.1	NR	rs2233278-G	0.945324	1E-8		0.0270159	[0.018-0.036] unit decrease	NR [NR]	N
1732	chr5	150467188	150467189	rs2233278	29031612	Hirata J	2017-10-12	J Invest Dermatol	Variants at HLA-A, HLA-C, and HLA-DQB1 Confer Risk of Psoriasis Vulgaris in Japanese.	Psoriasis vulgaris	282 Japanese ancestry cases, 426 Japanese ancestry controls	320 Japanese ancestry cases, 1,622 Japanese ancestry controls	5q33.1	TNIP1	rs2233278-C	0.090	4E-10		1.96	[1.59-2.41]	Illumina [6369185] (imputed)	N
1732	chr5	150467188	150467189	rs2233278	26626624	Stuart PE	2015-11-28	Am J Hum Genet	Genome-wide Association Analysis of Psoriatic Arthritis and Cutaneous Psoriasis Reveals Differences in Their Genetic Architecture.	Psoriasis vulgaris	4,007 European ancestry cases, 4,934 European ancestry controls	up to 9,075 European ancestry cases, up to European ancestry 12,726 controls	5q33.1	TNIP1	rs2233278-C	NR	4E-37		1.658	NR	Illumina [up to 11532644] (imputed)	N
1732	chr5	150467188	150467189	rs2233278	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Psoriasis	4,212 European ancestry cases, 8,032 European ancestry controls	NA	5q33.1	ANXA6, TNIP1	rs2233278-A	NR	1E-18		1.647	[1.557-1.743]	Affymetrix, Illumina, Perlegen [up to 5493100] (imputed)	N
1732	chr5	150467188	150467189	rs2233278	23143594	Tsoi LC	2012-12-01	Nat Genet	Identification of 15 new psoriasis susceptibility loci highlights the role of innate immunity.	Psoriasis	10,588 European ancestry cases, 22,806 European ancestry controls	NA	5q33.1	TNIP1	rs2233278-C	0.058	2E-42		1.59		Illumina [111236] (imputed)	N
1732	chr5	150469972	150469973	rs74817271	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Psoriasis vulgaris	5,072 European ancestry cases, 478,102 European ancestry controls, 206 East Asian ancestry cases, 172,289 East Asian ancestry controls	NA	5q33.1		rs74817271-A	NR	6E-15		0.3268	[0.24-0.41] unit increase	Affymetrix, Illumina [25844455] (imputed)	N
1732	chr5	150469972	150469973	rs74817271	30552173	Aterido A	2018-12-14	Ann Rheum Dis	Genetic variation at the glycosaminoglycan metabolism pathway contributes to the risk of psoriatic arthritis but not psoriasis.	Psoriatic arthritis	744 Spanish ancestry cases, 1,454 Spanish ancestry controls	1,430 cases, 1,417 controls	5q33.1	NR	rs74817271-?	NR	2E-8		5.64	[NR] z-score increase	Illumina [1387382] (imputed)	N
1732	chr5	150469972	150469973	rs74817271	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	5q33.1	TNIP1	rs74817271-?	NR	2E-26	(subset analysis)			Illumina [130052]	N
1733	chr5	150473673	150473674	rs999556	23049088	Meng W	2012-10-09	Invest Ophthalmol Vis Sci	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		5q33.1	intergenic	rs999556-?	0.2722	1E-15			[NR]	Affymetrix, Illumina [152234]	N
1733	chr5	150476128	150476129	rs11738559	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	5q33.1		rs11738559-T	NR	2E-10		0.0184	[0.013-0.024] unit increase	Affymetrix, Illumina [20529698] (imputed)	N
1733	chr5	150476674	150476675	rs79901336	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	5q33.1	TNIP1	rs79901336-T	0.054582	1E-9		0.030893918	[0.021-0.041] unit decrease	Affymetrix [93095623] (imputed)	N
1733	chr5	150478317	150478318	rs17728338	26626624	Stuart PE	2015-11-28	Am J Hum Genet	Genome-wide Association Analysis of Psoriatic Arthritis and Cutaneous Psoriasis Reveals Differences in Their Genetic Architecture.	Cutaneous psoriasis	1,363 European ancestry cases, 4,934 European ancestry controls	up to 2,969 European ancestry cases, up to European ancestry 14,384 controls		TNIP1	rs17728338-A	NR	2E-14		1.557	NR	Illumina [11532644] (imputed)	N
1733	chr5	150478317	150478318	rs17728338	25903422	Yin X	2015-04-23	Nat Commun	Genome-wide meta-analysis identifies multiple novel associations and ethnic heterogeneity of psoriasis susceptibility.	Psoriasis	3,496 European ancestry cases, 5,186 European ancestry controls, 1,588 Chinese ancestry cases, 3,546 Chinese ancestry controls	5,134 European ancestry cases, 5,633 European ancestry controls, 5,151 Chinese ancestry cases, 5,152 Chinese ancestry controls		TNIP1, ANXA6	rs17728338-A	0.10115	3E-7	(Chinese)	1.54	[1.31-1.82]	Illumina [up to 4778154] (imputed)	N
1733	chr5	150478317	150478318	rs17728338	25903422	Yin X	2015-04-23	Nat Commun	Genome-wide meta-analysis identifies multiple novel associations and ethnic heterogeneity of psoriasis susceptibility.	Psoriasis	3,496 European ancestry cases, 5,186 European ancestry controls, 1,588 Chinese ancestry cases, 3,546 Chinese ancestry controls	5,134 European ancestry cases, 5,633 European ancestry controls, 5,151 Chinese ancestry cases, 5,152 Chinese ancestry controls		TNIP1, ANXA6	rs17728338-A	0.054	4E-14	(EA)	1.64	[1.44-1.86]	Illumina [up to 4778154] (imputed)	N
1733	chr5	150478317	150478318	rs17728338	25903422	Yin X	2015-04-23	Nat Commun	Genome-wide meta-analysis identifies multiple novel associations and ethnic heterogeneity of psoriasis susceptibility.	Psoriasis	3,496 European ancestry cases, 5,186 European ancestry controls, 1,588 Chinese ancestry cases, 3,546 Chinese ancestry controls	5,134 European ancestry cases, 5,633 European ancestry controls, 5,151 Chinese ancestry cases, 5,152 Chinese ancestry controls		TNIP, ANXA6	rs17728338-A	0.054	6E-20		1.6	[1.45-1.77]	Illumina [up to 4778154] (imputed)	N
1733	chr5	150478317	150478318	rs17728338	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Inflammatory skin disease	2,079 European ancestry atopic dermatitis cases, 4,212 European ancestry psoriasis cases, 11,899 European ancestry controls	NA		ANXA6, TNIP1	rs17728338-?	NR	4E-38	(Opposed)			Affymetrix, Illumina [~ 5200000]	N
1733	chr5	150478317	150478318	rs17728338	19169254	Nair RP	2009-01-25	Nat Genet	Genome-wide scan reveals association of psoriasis with IL-23 and NF-kappaB pathways.	Psoriasis	1,359 European ancestry cases, 1,400 European ancestry controls	5,048 European ancestry cases, 5,041 European ancestry controls		TNIP1	rs17728338-A	0.054	1E-20		1.59	[NR]	Perlegen [~ 2500000] (imputed)	N
1733	chr5	150487194	150487195	rs4958895	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	Systemic lupus erythematosus	1,639 East Asian ancestry cases, 2,410 East Asian ancestry controls	NA			rs4958895-T	NR	1E-6		0.1849	[0.11-0.26] unit increase	Illumina [NR] (imputed)	N
1733	chr5	150518067	150518068	rs17728578	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	5q33.1	NR	rs17728578-?	NR	2E-6				Affymetrix [NR]	N
1733	chr5	150530678	150530679	rs1862362	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	5q33.1		rs1862362-G	NR	3E-14		0.0167	[0.012-0.021] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
1733	chr5	150530678	150530679	rs1862362	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	5q33.1	ANXA6	rs1862362-G	0.442426	3E-18		0.019472811	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1733	chr5	150530678	150530679	rs1862362	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q33.1	NR	rs1862362-G	0.496067	2E-19				Affymetrix, Illumina [23472807] (imputed)	N
1733	chr5	150530678	150530679	rs1862362	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	5q33.1	NR	rs1862362-G	0.442303	5E-20		0.017513	[0.014-0.021] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1733	chr5	150561336	150561337	rs1061837	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	5q33.1		rs1061837-?	NR	2E-21				NR [~ 8900000] (imputed)	N
1733	chr5	150566504	150566505	rs112914309	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	5q33.1		rs112914309-C	NR	2E-12		0.0408	[0.029-0.052] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
1733	chr5	150566504	150566505	rs112914309	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	5q33.1	CCDC69	rs112914309-C	0.041723	4E-9		0.03252343	[0.022-0.043] unit decrease	Affymetrix [93095623] (imputed)	N
1733	chr5	150566504	150566505	rs112914309	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q33.1	NR	rs112914309-C	0.0420453	1E-18				Affymetrix, Illumina [24649327] (imputed)	N
1733	chr5	150566504	150566505	rs112914309	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	5q33.1	NR	rs112914309-C	0.041445	2E-19		0.041179	[0.032-0.05] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1733	chr5	150566504	150566505	rs112914309	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q33.1	NR	rs112914309-C	0.0421186	3E-10				Affymetrix, Illumina [23114412] (imputed)	N
1733	chr5	150566504	150566505	rs112914309	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	5q33.1	NR	rs112914309-C	0.041525	6E-11		0.031561	[0.022-0.041] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
1733	chr5	150567016	150567017	rs61745454	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	5q33.1		rs61745454-G	NR	2E-9		0.0354	[0.024-0.047] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1733	chr5	150567016	150567017	rs61745454	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	5q33.1	CCDC69	rs61745454-G	0.042166	1E-17		0.046986297	[0.036-0.058] unit decrease	Affymetrix [93095623] (imputed)	N
1733	chr5	150567016	150567017	rs61745454	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	5q33.1	CCDC69	rs61745454-G	0.042195	1E-30		0.062999465	[0.052-0.074] unit decrease	Affymetrix [93095623] (imputed)	N
1733	chr5	150567016	150567017	rs61745454	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	5q33.1	CCDC69	rs61745454-G	0.042126	1E-15		0.044256072	[0.033-0.055] unit decrease	Affymetrix [93095623] (imputed)	N
1733	chr5	150567016	150567017	rs61745454	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	5q33.1	CCDC69	rs61745454-G	0.042138	1E-14		0.042742293	[0.032-0.054] unit decrease	Affymetrix [93095623] (imputed)	N
1733	chr5	150567016	150567017	rs61745454	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q33.1	NR	rs61745454-A	0.958186	3E-35				Affymetrix, Illumina [22063850] (imputed)	N
1733	chr5	150567016	150567017	rs61745454	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	5q33.1	NR	rs61745454-A	0.958257	9E-37		0.059577	[0.05-0.069] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
1733	chr5	150567016	150567017	rs61745454	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q33.1	NR	rs61745454-G	0.0419266	2E-16				Affymetrix, Illumina [23467995] (imputed)	N
1733	chr5	150567016	150567017	rs61745454	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	5q33.1	NR	rs61745454-G	0.041831	2E-16		0.038476	[0.029-0.048] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1733	chr5	150567016	150567017	rs61745454	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	5q33.1		rs61745454-?	NR	3E-14				NR [~ 8900000] (imputed)	N
1733	chr5	150567016	150567017	rs61745454	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	5q33.1		rs61745454-?	NR	2E-37				NR [~ 8900000] (imputed)	N
1733	chr5	150567016	150567017	rs61745454	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	5q33.1	CCDC69	rs61745454-G	0.042	1E-10		0.05719418	[0.04-0.075] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1733	chr5	150567016	150567017	rs61745454	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	5q33.1	CCDC69	rs61745454-G	0.042	3E-12		0.06216414	[0.045-0.08] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1733	chr5	150585866	150585867	rs7724774	23568457	Wade TD	2013-04-09	Int J Eat Disord	Genetic variants associated with disordered eating.	Bulimia nervosa	151 European ancestry female cases, 2,291 European ancestry female controls	NA	5q33.1	GM2A, CCDC69	rs7724774-G	0.884	7E-6		0.054	[0.03-0.078] unit decrease	Illumina [6150213] (imputed)	N
1733	chr5	150587345	150587346	rs6865418	27629369	Gao J	2016-09-15	Neuropsychopharmacology	Genome-Wide Association Study of Loneliness Demonstrates a Role for Common Variation.	Loneliness (linear analysis)	8,490 European ancestry individuals, 1,228 African American individuals, 867 Hispanic American individuals, 175 individuals	NA	5q33.1	CCDC69	rs6865418-?		3E-6	(EA)	0.162	[0.094-0.23] unit decrease	Illumina [7205781] (imputed)	N
1733	chr5	150594194	150594195	rs12521757	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	5q33.1		rs12521757-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1733	chr5	150594801	150594802	rs979455	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	5q33.1	CCDC69	rs979455-G	0.201	9E-6	(Dinner intake, adj EER )	0.04	[NR] kcal increase	Illumina [899892]	N
1733	chr5	150595072	150595073	rs979453	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	5q33.1	NR	rs979453-G	0.33	3E-6		1.08	[1.05-1.12]	Affymetrix [9886854] (imputed)	N
1733	chr5	150595072	150595073	rs979453	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	5q33.1	NR	rs979453-G	0.33	8E-9			[NR]	Affymetrix [9886854] (imputed)	N
1733	chr5	150595072	150595073	rs979453	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	5q33.1	NR	rs979453-G	0.33	4E-10		1.08	[1.06-1.11]	Affymetrix [9886854] (imputed)	N
1733	chr5	150595072	150595073	rs979453	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	5q33.1	NR	rs979453-G	0.33	2E-9			[NR]	Affymetrix [9886854] (imputed)	N
1733	chr5	150595072	150595073	rs979453	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in non-current smokers	16,488 European ancestry cases, 169,688 European ancestry controls	NA	5q33.1	NR	rs979453-G	0.33	4E-10		1.08	[1.06-1.11]	Affymetrix [9886854] (imputed)	N
1733	chr5	150595072	150595073	rs979453	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in never smokers	8,631 European ancestry cases, 120,544 European ancestry controls	NA	5q33.1	NR	rs979453-G	0.33	3E-6		1.08	[1.05-1.12]	Affymetrix [9886854] (imputed)	N
1733	chr5	150595072	150595073	rs979453	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	5q33.1	CCDC69	rs979453-G	0.34	1E-8		1.06	[1.04-1.08]	Affymetrix, Illumina [6224355] (imputed)	N
1734	chr5	150622739	150622740	rs60274968	34815687	Wu SE	2021-11-16	J Inflamm Res	A Genome-Wide Association Study Identifies Novel Risk Loci for Sarcopenia in a Taiwanese Population.	Low hand grip strength	34 Taiwanese ancestry cases, 62 Taiwanese ancestry controls	NA	5q33.1		rs60274968-?	0.05729	4E-6		17.51		Affymetrix [NR]	N
1734	chr5	150633107	150633108	rs41290575	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	5q33.1	Intergenic	rs41290575-?	NR	2E-7		1.806	[NR]	Affymetrix [492217] (imputed)	N
1734	chr5	150634914	150634915	rs153473	29953918	Deng C	2018-06-25	Gene	Identification of three novel loci of ALDH2 Gene for Serum Folate levels in a Male Chinese Population by Genome-Wide Association Study.	Serum folate levels	1,999 Han Chinese ancestry individuals	NA	5q33.1	GM2A	rs153473-?	NR	7E-6				Illumina [1940243] (imputed)	N
1734	chr5	150691485	150691486	rs428668	28502801	Law MH	2017-05-11	J Invest Dermatol	Genome-Wide Association Shows that Pigmentation Genes Play a Role in Skin Aging.	Skin aging (microtopography measurement)	5,087 individuals	NA	5q33.1	SLC36A2	rs428668-T		5E-6		0.0695	[NR] unit increase	Illumina [at least 233546] (imputed)	N
1734	chr5	150693905	150693906	rs12655635	33283231	Calvo-Serra B	2020-12-05	Hum Mol Genet	Urinary metabolite quantitative trait loci in children and their interaction with dietary factors.	Glycine levels	996 European ancestry individuals	NA	5q33.1		rs12655635-T	0.1616	1E-6		0.2929091	unit decrease	Illumina [283704]	N
1734	chr5	150718873	150718874	rs2431080	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in diabetes mellitus	153 Korean ancestry cases, 5,161 Korean ancestry controls	NA	5q33.1		rs2431080-C	0.0101	4E-6		4.484	[2.374-8.472]	Affymetrix [7975321] (imputed)	N
1735	chr5	150734631	150734632	rs246478	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	5q33.1	NR	rs246478-?	NR	1E-9				Affymetrix [NR]	N
1735	chr5	150746033	150746034	rs10463316	23934736	Yu B	2013-08-11	Genet Epidemiol	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels (Pyroglutamine)	1,260 African American individuals	NA	5q33.1	LOC402233	rs10463316-A	0.642	2E-10		0.14	[0.10-0.18] unit increase	Affymetrix [~ 2500000] (imputed)	N
1735	chr5	150797665	150797666	rs559871199	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	5q33.1		rs559871199-G	0.0016438	6E-6		0.38182	[0.22-0.55] unit decrease	Affymetrix [15580782] (imputed)	N
1735	chr5	150828677	150828678	rs144467857	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q33.1	NR	rs144467857-T	0.01045	2E-8	(SAMHD1)	0.03279	NR unit increase	Illumina [1671387] (imputed)	N
1735	chr5	150831641	150831642	rs4958272	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	5q33.1	SLC36A1	rs4958272-T	0.503378	6E-15		0.017580304	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1735	chr5	150831641	150831642	rs4958272	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	5q33.1	SLC36A1	rs4958272-T	0.503386	2E-12		0.015840933	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1735	chr5	150843486	150843487	rs357613	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q33.1	NR	rs357613-A	0.503015	6E-10				Affymetrix, Illumina [19905671] (imputed)	N
1735	chr5	150843486	150843487	rs357613	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	5q33.1	NR	rs357613-A	0.507364	3E-12		0.01519	[0.011-0.019] SD unit decrease	Affymetrix, Illumina [50036608] (imputed)	N
1735	chr5	150846611	150846612	rs357618	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of white cells	171,996 European ancestry individuals	NA	5q33.1	SLC36A1	rs357618-G	0.3864	5E-9		0.02080801	[0.014-0.028] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1735	chr5	150848653	150848654	rs10709981	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of granulocytes	170,223 European ancestry individuals	NA	5q33.1	SLC36A1	rs10709981-T	0.3719	4E-9		0.02152243	[0.014-0.029] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1736	chr5	150952718	150952719	rs114494715	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q33.1	NR	rs114494715-T	0.04704	1E-9	(CIITA)	0.2502	NR unit increase	Illumina [1671387] (imputed)	N
1736	chr5	150977056	150977057	rs4958275	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Medial orbital frontal cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	5q33.1	NR	rs4958275-?		2E-6				Illumina [4322238] (imputed)	N
1736	chr5	150977056	150977057	rs4958275	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Caudal anterior-cingulate cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	5q33.1	NR	rs4958275-?		3E-6				Illumina [4322238] (imputed)	N
1736	chr5	150981703	150981704	rs114527838	32693751	Keene KL	2020-07-22	Stroke	Genome-Wide Association Study Meta-Analysis of Stroke in 22 000 Individuals of African Descent Identifies Novel Associations With Stroke.	Stroke	3,734 African ancestry cases, 18,317 African ancestry controls	NA	5q33.1	FAT2, SPARC	rs114527838-A	NR	6E-7		0.76	[1.25-1.39]	Affymetrix, Illumina [~ 16900000] (imputed)	N
1737	chr5	151012312	151012313	rs187769864	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	5q33.1	Intergenic	rs187769864-A	1.0	2E-6	(AA)	0.613	unit increase	Illumina [NR] (imputed)	N
1737	chr5	151045922	151045923	rs41290587	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	5q33.1		rs41290587-T	NR	4E-8		0.0776	[0.05-0.105] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1737	chr5	151045922	151045923	rs41290587	34210852	Akbari P	2021-07-01	Science	Sequencing of 640,000 exomes identifies <i>GPR75</i> variants associated with protection from obesity.	Body mass index	549,780 European ancestry individuals, 95,846 admixed American ancestry individuals	NA	5q33.1		rs41290587-?	NR	1E-14		0.08	[0.1-0.06] unit increase	Illumina [NR]	N
1737	chr5	151045922	151045923	rs41290587	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	5q33.1	NR	rs41290587-?	NR	1E-10				Affymetrix [~ 8270000] (imputed)	N
1737	chr5	151045922	151045923	rs41290587	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	5q33.1	NA	rs41290587-T	0.0067	3E-11		0.0776	[0.055-0.1] unit increase	NR [~ 27400000] (imputed)	N
1737	chr5	151050483	151050484	rs72800245	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5q33.1		rs72800245-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1737	chr5	151107095	151107096	rs11742501	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Glomerular filtration rate	143,658 Japanese ancestry individuals	NA	5q33.1	CTB-113P19.1, ATOX1	rs11742501-?	NR	2E-8		0.03558	[0.023-0.048] unit increase novel	Illumina [6108953] (imputed)	N
1737	chr5	151107095	151107096	rs11742501	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Creatinine levels	142,097 Japanese ancestry individuals	NA	5q33.1	CTB-113P19.1, ATOX1	rs11742501-?	NR	1E-9		0.03778	[0.026-0.05] unit decrease novel	Illumina [6108953] (imputed)	N
1737	chr5	151114334	151114335	rs2915820	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	5q33.1	NR	rs2915820-?	NR	3E-6		0.0080527	[0.0047-0.0115] unit decrease	Affymetrix [805426] (imputed)	N
1737	chr5	151123346	151123347	rs17112252	27980656	Justice AE	2016-10-18	BMC Proc	Genome-wide association of trajectories of systolic blood pressure change.	Systolic blood pressure change trajectory	up to 683 Mexican American individuals from 20 families	NA	5q33.1	ATOX1	rs17112252-A		1E-8	(Trajectory class 2)	0.47	[0.31-0.63] unit increase	Illumina [at least 472049] (imputed)	N
1738	chr5	151126323	151126324	rs2016409	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	5q33.1		rs2016409-G	0.26	2E-16		8.24	z score increase	Affymetrix [9061022] (imputed)	N
1738	chr5	151126323	151126324	rs2016409	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	5q33.1		rs2016409-?	NR	7E-11				NR [~ 8900000] (imputed)	N
1738	chr5	151140843	151140844	rs1549920	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Insular cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	5q33.1	NR	rs1549920-?		2E-6				Illumina [4322238] (imputed)	N
1738	chr5	151143773	151143774	rs2964582	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	5q33.1	NR	rs2964582-A	0.2536	5E-13				NR [9056863] (imputed)	N
1738	chr5	151151256	151151257	rs2915875	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	5q33.1	G3BP1, ATOX1	rs2915875-T	0.174151	2E-10		0.018448919	[0.013-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1738	chr5	151152731	151152731	rs34394231	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	5q33.1	G3BP1	rs34394231-CT	0.253821	2E-9		0.015581113	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1738	chr5	151160121	151160122	rs2964573	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	5q33.1		rs2964573-T	0.26	3E-13		7.32	z score increase	Affymetrix [9061022] (imputed)	N
1738	chr5	151160121	151160122	rs2964573	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	5q33.1	NR	rs2964573-T	0.2548	3E-11				NR [9056863] (imputed)	N
1738	chr5	151169880	151169881	rs2053062	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	5q33.1		rs2053062-T	NR	5E-12		0.0336	[0.024-0.043] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
1738	chr5	151169880	151169881	rs2053062	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	150,266 East Asian ancestry individuals	NA	5q33.1		rs2053062-T	0.104326	5E-12		0.0335594	[0.024-0.043] unit decrease	Illumina [13478778] (imputed)	N
1738	chr5	151177996	151177997	rs191107471	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Periventricular white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	5q33.1	G3BP1	rs191107471-A	0.9841	2E-6		0.1655	[0.098-0.233] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1738	chr5	151181385	151181386	rs186127414	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	5q33.1	Intergenic	rs186127414-A	NR	2E-7	(between families)	5.17	unit increase	Affymetrix [up to 15107142] (imputed)	N
1738	chr5	151184700	151184701	rs1062177	24839885	Benke KS	2014-02-19	J Am Acad Child Adolesc Psychiatry	A genome-wide association meta-analysis of preschool internalizing problems.	Preschool internalizing problems	3,121 European ancestry individuals, 1,475 children from 1,031 families	NA	5q33.1	NR	rs1062177-T	0.2475	8E-6		0.16	[0.09-0.23] unit decrease	Affymetrix, Illumina [2403520] (imputed)	N
1738	chr5	151185432	151185433	rs12522670	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q33.1	NR	rs12522670-T	0.80279	8E-12				Affymetrix, Illumina [22063850] (imputed)	N
1738	chr5	151207472	151207473	rs12654573	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	5q33.1		rs12654573-G	0.26	9E-13		7.14	z score increase	Affymetrix [9061022] (imputed)	N
1738	chr5	151222808	151222809	rs7721901	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	5q33.1		rs7721901-T	NR	5E-8		0.0379	[0.024-0.051] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1739	chr5	151267072	151267073	rs73794390	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	5q33.1		rs73794390-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1739	chr5	151270329	151270330	rs890832	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	5q33.1	NR	rs890832-?	NR	5E-14				Affymetrix [NR]	N
1739	chr5	151319121	151319122	rs182791062	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	5q33.1	Intergenic	rs182791062-G	1.0	4E-6	(AA)	0.506	unit increase	Illumina [NR] (imputed)	N
1739	chr5	151324599	151324600	rs302395	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	5q33.1	NR	rs302395-G	0.3221	1E-8		0.0232	[0.015-0.031] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1739	chr5	151344557	151344558	rs170020	21787189	Nyberg F	2011-07-01	Pharmacogenomics	Interstitial lung disease in gefitinib-treated Japanese patients with non-small-cell lung cancer: genome-wide analysis of genetic data.	Interstitial lung disease	80 Japanese ancestry cases, 194 Japanese ancestry controls	NA	5q33.1	intergenic	rs170020-C	NR	4E-6		2.96	[1.80-.5.00]	Illumina, Perlegen [465816]	N
1740	chr5	151395979	151395980	rs255490	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Caudal anterior-cingulate cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	5q33.1	LOC101927115	rs255490-?		7E-6				Illumina [4322238] (imputed)	N
1740	chr5	151400699	151400700	rs191199264	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	5q33.1	AK001582	rs191199264-A	1.0	4E-6	(AA)	0.492	unit increase	Illumina [NR] (imputed)	N
1740	chr5	151473893	151473894	rs149167248	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Periventricular white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	5q33.1	CTB-12O2.1	rs149167248-A	0.0174	6E-6		0.0981	[0.056-0.141] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1741	chr5	151568098	151568099	rs294958	24024966	Teumer A	2013-08-14	J Clin Periodontol	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (PAL4Q3)	up to 2,969 European ancestry individuals	NA	5q33.1	NMUR2	rs294958-A	0.48	5E-6	(Age 20-81 years)	1.29	[1.16-1.44]	Affymetrix, Illumina [up to 17585496] (imputed)	N
1742	chr5	151662926	151662927	rs114484980	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	5q33.1	NMUR2	rs114484980-T	0.0124604681868164	2E-6	(G_Ruminococcus_RNT)	0.499907	[0.29-0.71] unit increase	Illumina [7711310] (imputed)	N
1742	chr5	151695768	151695769	rs723427	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	5q33.1	GLRA1, NMUR2	rs723427-A	0.182	9E-14		1.0352		Affymetrix [11880941] (imputed)	N
1742	chr5	151700576	151700577	rs142704867	30120083	Ferguson A	2018-08-14	EBioMedicine	Genome-Wide Association Study of Circadian Rhythmicity in 71,500 UK Biobank Participants and Polygenic Association with Mood Instability.	Relative amplitude of rest-activity cycles	77,440 European ancestry individuals	NA	5q33.1	Intergenic	rs142704867-?	NR	4E-7		0.004	unit increase	Affymetrix [7969123] (imputed)	N
1742	chr5	151708018	151708019	rs7737302	29970889	Day FR	2018-07-03	Nat Commun	Elucidating the genetic basis of social interaction and isolation.	Loneliness (MTAG)	487,647 European ancestry individuals	NA	5q33.1	NMUR2	rs7737302-C	0.733342	8E-9		0.013373127	[0.0088-0.0179] unit increase	NR [NR] (imputed)	N
1742	chr5	151708018	151708019	rs7737302	29970889	Day FR	2018-07-03	Nat Commun	Elucidating the genetic basis of social interaction and isolation.	Loneliness	80,134 European ancestry cases, 364,890 European ancestry controls	NA	5q33.1	NMUR2	rs7737302-C	0.733	1E-7		0.0049	[0.0031-0.0067] unit increase	NR [NR] (imputed)	N
1742	chr5	151734108	151734109	rs1010254	20395239	Macgregor S	2010-04-15	Hum Mol Genet	Genome-wide association identifies ATOH7 as a major gene determining human optic disc size.	Optic nerve measurement (cup area)	1,368 European ancestry twins from 666 families	848 European ancestry twins from 531 families	5q33.1	NMUR2	rs1010254-C	NR	8E-6		0.182	[0.084-0.280] unit increase	Illumina [~ 2740000] (imputed)	N
1742	chr5	151763632	151763633	rs10476781	29555444	Hamer MA	2018-03-16	J Invest Dermatol	Facial Wrinkles in Europeans: a Genome-Wide Association Study.	Facial wrinkles	3,513 north-western European ancestry individuals	599 north-western European ancestry individuals	5q33.1	NR	rs10476781-T	0.94	2E-8		5.6	[NR] z score decrease	Illumina [9009554] (imputed)	N
1743	chr5	151807963	151807964	rs1946225	30266756	Chang X	2018-09-28	J Med Genet	Common variants at 5q33.1 predispose to migraine in African-American children.	Paediatric migraine	380 African American cases, 2,129 African American controls, 599 European American cases, 7,327 European American controls	233 African American cases, 4,038 African American controls	5q33.1	NR	rs1946225-G	0.024	1E-8	(AA)	2.294	[1.728-3.046]	Illumina [up to 522471]	N
1743	chr5	151828422	151828423	rs72793414	30266756	Chang X	2018-09-28	J Med Genet	Common variants at 5q33.1 predispose to migraine in African-American children.	Paediatric migraine	380 African American cases, 2,129 African American controls, 599 European American cases, 7,327 European American controls	233 African American cases, 4,038 African American controls	5q33.1	NR	rs72793414-A	0.023	4E-10	(AA)	2.441	[1.847-3.227]	Illumina [up to 522471]	N
1743	chr5	151886146	151886147	rs2909950	35043453	Qi G	2022-01-18	Genet Epidemiol	Genome-wide association studies of 27 accelerometry-derived physical activity measurements identified novel loci and genetic mechanisms.	Physical activity (Total log acceleration 6pm-8pm)	88,411 European ancestry individuals	NA	5q33.1		rs2909950-A	0.418	9E-10		0.028	unit decrease	Affymetrix [8951705] (imputed)	N
1744	chr5	151936717	151936718	rs2961757	34212547	An J	2021-07-01	Allergy Asthma Immunol Res	Genome-Wide Association Study of Korean Asthmatics: A Comparison With UK Asthmatics.	Adult asthma	1,386 Korean ancestry cases, 5,205 Korean ancestry controls	NA	5q33.1		rs2961757-T	0.23	6E-7		1.28	[1.16-1.4]	Affymetrix [4922160] (imputed)	N
1744	chr5	151942250	151942251	rs4958316	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Ease of getting up in the morning	385,949 European ancestry individuals	NA	5q33.1	NR	rs4958316-A	0.2883	4E-15		0.015	[0.011-0.019] unit increase	Affymetrix, Illumina [10862568] (imputed)	N
1744	chr5	151943053	151943054	rs4958318	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	5q33.1	NMUR2, GRIA1	rs4958318-T	0.2853	7E-18		1.036		Affymetrix [11880941] (imputed)	N
1744	chr5	151945810	151945811	rs6870096	30531941	Doherty A	2018-12-10	Nat Commun	GWAS identifies 14 loci for device-measured physical activity and sleep duration.	Sedentary behaviour duration	91,105 European ancestry individuals	NA	5q33.1	NMUR2	rs6870096-C	0.321	2E-8		0.028	[0.018-0.038] SD units decrease	NR [9926106] (imputed)	N
1744	chr5	151951124	151951125	rs6872796	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Tea consumption	336,898 European ancestry individuals	39,924 European ancestry individuals	5q33.1	LINC01470	rs6872796-A	0.715	8E-10		0.0105	[0.0072-0.0138] unit increase	Affymetrix [~ 7740000] (imputed)	N
1744	chr5	151951880	151951881	rs181878063	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 1, breadth of lateral portion of upper face)	2,187 European ancestry individuals	NA	5q33.1	NR	rs181878063-C	0.05594	2E-6		0.3102	[0.18-0.44] unit increase	Illumina [10677593] (imputed)	N
1744	chr5	151953546	151953547	rs2961761	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	5q33.1	Intergenic	rs2961761-A	0.5404	1E-9	(MTAG)	0.008	[0.0055-0.0105] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1744	chr5	151970515	151970516	rs76241163	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	5q33.1	Intergenic	rs76241163-G	0.5596	3E-11		0.0152	[0.011-0.02] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1744	chr5	151977840	151977841	rs17453880	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Subjective well-being	298,420 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	5q33.1	NR	rs17453880-A	0.3206	3E-6		0.013	[0.0075-0.0185] unit increase	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
1744	chr5	151979106	151979107	rs200528994	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	5q33.1	NR	rs200528994-?	NR	3E-8		1.15189	[1.1-1.2]	Affymetrix, Illumina [12447948] (imputed)	N
1744	chr5	151993103	151993104	rs79212538	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	5q33.1	NR	rs79212538-T	NR	3E-8		1.15	[NR]	Illumina [7158791] (imputed)	N
1744	chr5	152007074	152007075	rs13361438	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs ADHD (ordinary least squares (OLS))	40,675 schizophrenia cases, 19,099 ADHD cases	NA	5q33.1		rs13361438-?	NR	1E-8		0.0196	NR unit decrease	NR [4428082] (imputed)	N
1744	chr5	152007074	152007075	rs13361438	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	65,967 individuals	NA	5q33.1	NR	rs13361438-?		4E-8				NR [8377093]	N
1744	chr5	152016092	152016093	rs4958568	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	5q33.1	NMUR2	rs4958568-G	0.72267	2E-10		0.00995639	[0.0069-0.013] unit increase	Affymetrix [12370749]	N
1744	chr5	152016092	152016093	rs4958568	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	5q33.1		rs4958568-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1744	chr5	152016092	152016093	rs4958568	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	5q33.1	Intergenic	rs4958568-A	0.2729	5E-20	(MTAG)	0.017	[0.013-0.021] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1744	chr5	152039420	152039421	rs6895232	30531941	Doherty A	2018-12-10	Nat Commun	GWAS identifies 14 loci for device-measured physical activity and sleep duration.	Physical activity (overall physical activity time)	91,105 European ancestry individuals	NA	5q33.1	LINC01470	rs6895232-T	0.663	3E-8		0.027	[0.017-0.037] SD units increase	NR [9926106] (imputed)	N
1744	chr5	152039985	152039986	rs192659519	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q33.1	NR	rs192659519-A	0.0122	4E-10	(AKR7A3)	1.152	NR unit increase	Illumina [1671387] (imputed)	N
1745	chr5	152052331	152052332	rs2964255	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	5q33.1		rs2964255-A	0.3066	6E-9		0.0088	[0.0059-0.0117] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1745	chr5	152053403	152053404	rs72799107	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	5q33.1	Intergenic	rs72799107-T	0.2656	8E-24	(MTAG)	0.0204	[0.016-0.024] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1745	chr5	152053403	152053404	rs72799107	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	5q33.1	Intergenic	rs72799107-C	0.7344	8E-23		0.0217	[0.017-0.026] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1745	chr5	152053479	152053480	rs2974550	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		5q33.1	NMUR2	rs2974550-T	0.115109	3E-9		0.0128534	[0.0086-0.0171] unit increase	Affymetrix [12370749]	N
1745	chr5	152055234	152055235	rs62398709	29899525	Klimentidis YC	2018-06-13	Int J Obes (Lond)	Genome-wide association study of habitual physical activity in over 377,000 UK Biobank participants identifies multiple variants including CADM2 and APOE.	Accelerometer-based physical activity measurement (average acceleration)	91,084 European ancestry individuals	NA	5q33.1	LINC01470	rs62398709-A	0.65	7E-11	(model 3)	0.24	milli-gravities increase	Affymetrix [11800000] (imputed)	N
1745	chr5	152067928	152067929	rs2964252	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	5q33.1	Intergenic	rs2964252-A	0.3132	2E-10	(MTAG)	0.009	[0.0063-0.0117] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1745	chr5	152076763	152076764	rs12153740	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	5q33.1	intergenic	rs12153740-C	0.636	1E-6		1.066735		NR [9372253] (imputed)	N
1745	chr5	152077480	152077481	rs192084998	33287642	Said MA	2020-12-08	J Am Heart Assoc	Associations of Observational and Genetically Determined Caffeine Intake With Coronary Artery Disease and Diabetes Mellitus.	Caffeine consumption from tea	395,866 European ancestry individuals	NA	5q33.1	NMUR2	rs192084998-G	0.703764	1E-10		0.015836	[0.011-0.021] unit increase	Affymetrix [19400838] (imputed)	N
1745	chr5	152078371	152078372	rs113799727	33169155	Bigdeli TB	2020-11-10	Schizophr Bull	Genome-Wide Association Studies of Schizophrenia and Bipolar Disorder in a Diverse Cohort of US Veterans.	Bipolar disorder	24,267 European ancestry cases, 3,027 African American cases, 1,032 Latino cases, 79,492 European ancestry controls, 8,097 African American controls, 3,090 Latino controls	NA	5q33.1	NMUR2	rs113799727-G	NR	5E-9		1.08	[1.06-1.1]	Affymetrix [up to 49134253] (imputed)	N
1745	chr5	152078662	152078663	rs6579956	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Depression	at least 5,919 European ancestry cases, at least 130,691 European ancestry controls	634,037 European ancestry cases, 1,308,690 European ancestry controls	5q33.1	AC091969.1	rs6579956-G	0.4901	1E-6		0.010819415	[0.0058-0.0159] unit decrease	NR [9417325] (imputed)	N
1745	chr5	152078662	152078663	rs6579956	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Subjective well-being (MTAG)	388,538 European ancestry individuals	NA	5q33.1	NR	rs6579956-G	0.525	1E-10		0.0118	[0.0083-0.0153] unit increase	Illumina [NR] (imputed)	N
1745	chr5	152078662	152078663	rs6579956	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Subjective well-being	388,538 European ancestry individuals	NA	5q33.1	NR	rs6579956-G	0.525	2E-9		0.0136	[0.0091-0.0181] unit increase	Illumina [NR] (imputed)	N
1745	chr5	152078662	152078663	rs6579956	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Subjective well-being	298,420 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	5q33.1	NR	rs6579956-T	0.4737	4E-9		0.01732923	[0.012-0.023] unit decrease	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
1745	chr5	152084872	152084873	rs72799126	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	5q33.1	Intergenic	rs72799126-T	0.7222	5E-10	(MTAG)	0.0159	[0.011-0.021] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1745	chr5	152100731	152100732	rs72799142	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	5q33.1	NMUR2, GRIA1	rs72799142-C	0.28769999999999996	2E-17		1.0345541		Affymetrix [11880941] (imputed)	N
1745	chr5	152103313	152103314	rs147254607	30787463	Escala-Garcia M	2019-02-21	Br J Cancer	Genome-wide association study of germline variants and breast cancer-specific mortality.	Breast cancer specific mortality in estrogen receptor negative breast cancer	2,125 European ancestry cases, 14,047 European ancestry controls	NA	5q33.1	NR	rs147254607-?	NR	5E-7		1.9110351	[1.48-2.46]	Affymetrix, Illumina [~ 10400000] (imputed)	N
1745	chr5	152138597	152138598	rs56208248	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Bipolar disorder (MTAG)	1,450,972 European ancestry individuals	NA			rs56208248-?	NR	4E-9				NR [2625067]	N
1745	chr5	152165009	152165010	rs6579967	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 1, breadth of lateral portion of upper face)	2,187 European ancestry individuals	NA	5q33.1	NR	rs6579967-G	0.06307	1E-6		0.2979	[0.18-0.42] unit increase	Illumina [10677593] (imputed)	N
1746	chr5	152176785	152176786	rs113897692	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	5q33.1	TRNAC32P	rs113897692-A	NR	5E-9	(EA)	1.075	[1.05-1.1]	Illumina [6627481] (imputed)	N
1746	chr5	152177120	152177121	rs111294930	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Bipolar disorder (MTAG)	at least 20,352 European ancestry cases, at least 31,358 European ancestry controls	NA	5q33.1	NR	rs111294930-A	0.7187	6E-9		0.07580467	[0.05-0.101] unit increase	NR [NR]	N
1746	chr5	152177120	152177121	rs111294930	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	5q33.1	Intergenic	rs111294930-?		3E-10				NR [6786993] (imputed)	N
1746	chr5	152177120	152177121	rs111294930	29483656	Pardinas AF	2018-02-26	Nat Genet	Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.	Schizophrenia	40,675 European ancestry cases, 64,643 European ancestry controls	1,651 European ancestry cases, 4,111 cases, 142,717 European ancestry controls, 11,507 controls	5q33.1	LOC101927134	rs111294930-?	NR	9E-12		1.086	[1.06-1.11]	Illumina [8000000] (imputed)	N
1746	chr5	152177120	152177121	rs111294930	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	5q33.1	NR	rs111294930-A	NR	4E-9		1.09	[NR]	Illumina [7158791] (imputed)	N
1746	chr5	152177120	152177121	rs111294930	25056061	Ripke S	2014-07-22	Nature	Biological insights from 108 schizophrenia-associated genetic loci.	Schizophrenia	32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	1,513 European ancestry cases, 66,236 European ancestry controls	5q33.1	GRIA1	rs111294930-A	0.782	1E-10		1.094	[1.064-1.124]	Affymetrix, Illumina [9005918] (imputed)	N
1746	chr5	152183747	152183748	rs4460127	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms (MTAG)	354,862 European ancestry individuals	NA	5q33.1	NR	rs4460127-A	0.363	2E-8		0.0127	[0.0082-0.0172] unit increase	Illumina [NR] (imputed)	N
1746	chr5	152187122	152187123	rs72799190	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Bipolar disorder (MTAG)	65,682 individuals	NA	5q33.1	NR	rs72799190-?		1E-12				NR [520857]	N
1746	chr5	152187728	152187729	rs4958581	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Subjective well-being	298,420 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	5q33.1	NMUR2	rs4958581-T	0.6551	2E-8		0.0153	[0.0099-0.0207] unit increase	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
1746	chr5	152190704	152190705	rs72799198	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	67,764 individuals	NA	5q33.1	NR	rs72799198-?		2E-12				NR [8377093]	N
1746	chr5	152203901	152203902	rs72801026	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	5q33.1	NMUR2	rs72801026-T	0.2929	1E-11		0.017614836	[0.013-0.023] unit decrease	Affymetrix [11515109] (imputed)	N
1746	chr5	152204740	152204741	rs67988891	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	5q33.1	NMUR2, GRIA1	rs67988891-G	0.31789999999999996	2E-18		1.0344471		Affymetrix [11880941] (imputed)	N
1746	chr5	152204740	152204741	rs67988891	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	5q33.1	NMUR2, GRIA1	rs67988891-G	0.31789999999999996	2E-18		1.0369669		Affymetrix [11880941] (imputed)	N
1746	chr5	152205429	152205430	rs4246036	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	5q33.1		rs4246036-?	NR	1E-13				NR [~ 8900000] (imputed)	N
1746	chr5	152235214	152235215	rs72802868	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs anorexia nervosa (ordinary least squares (OLS))	40,675 schizophrenia cases, 16,992 anorexia nervosa cases	NA	5q33.1		rs72802868-?	NR	1E-10		0.0212	NR unit decrease	NR [4425810] (imputed)	N
1746	chr5	152244550	152244551	rs2069117	29970889	Day FR	2018-07-03	Nat Commun	Elucidating the genetic basis of social interaction and isolation.	Loneliness (MTAG)	487,647 European ancestry individuals	NA	5q33.1	NR	rs2069117-A	0.367531	2E-11		0.014259496	[0.01-0.018] unit decrease	NR [NR] (imputed)	N
1746	chr5	152244550	152244551	rs2069117	29970889	Day FR	2018-07-03	Nat Commun	Elucidating the genetic basis of social interaction and isolation.	Loneliness	80,134 European ancestry cases, 364,890 European ancestry controls	NA	5q33.1	NMUR2	rs2069117-A	0.368	8E-10		0.0051	[0.0035-0.0067] unit decrease	NR [NR] (imputed)	N
1746	chr5	152244550	152244551	rs2069117	29970889	Day FR	2018-07-03	Nat Commun	Elucidating the genetic basis of social interaction and isolation.	Ability to confide in someone	64,505 European ancestry cases, 238,062 European ancestry controls	NA	5q33.1	NMUR2	rs2069117-A	0.368	4E-6		0.005	[-0.0048-0.0148] unit decrease	NR [NR] (imputed)	N
1746	chr5	152248566	152248567	rs4958586	31518406	Abdellaoui A	2019-09-13	Hum Mol Genet	Phenome-wide investigation of health outcomes associated with genetic predisposition to loneliness.	Loneliness	511,280 European ancestry individuals	NA	5q33.1	AC091969.1	rs4958586-?	NR	2E-10		0.02	[0.014-0.026] unit decrease	Affymetrix, Illumina [up to 14113458] (imputed)	N
1746	chr5	152248566	152248567	rs4958586	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling lonely	376,352 European ancestry individuals	NA	5q33.1	NMUR2	rs4958586-A	0.377362	6E-9		5.83	z score increase	NR [10847151] (imputed)	N
1746	chr5	152251432	152251433	rs7444191	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	5q33.1	AC091969.1	rs7444191-?	NR	2E-10		0.01334298	[0.0092-0.0175] unit decrease	NR [7306098]	N
1746	chr5	152257171	152257172	rs4509081	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Intake of total sugars	174,424 European ancestry individuals	NA	5q33.1	AC091969.1	rs4509081-G	0.63	3E-6		0.81	[0.48-1.14] g/day increase	Affymetrix [10353649] (imputed)	N
1746	chr5	152278019	152278020	rs17113771	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Life satisfaction	166,205 European ancestry individuals	NA	5q33.1	NR	rs17113771-T	0.2947	5E-6		0.018	[0.01-0.026] unit increase	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
1746	chr5	152288452	152288453	rs4262150	22688191	Bergen SE	2012-06-12	Mol Psychiatry	Genome-wide association study in a Swedish population yields support for greater CNV and MHC involvement in schizophrenia compared with bipolar disorder.	Bipolar disorder and schizophrenia	2,111 European ancestry schizophrenia cases, 836 European ancestry bipolar disorder cases, 2,535 European ancestry controls	NA	5q33.1	NMUR2	rs4262150-?	NR	7E-6		1.22	[NR]	Affymetrix [745006]	N
1746	chr5	152298889	152298890	rs10052000	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	5q33.1		rs10052000-C	0.3226	8E-19		0.02	[0.016-0.024] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
1746	chr5	152299753	152299754	rs113568682	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	5q33.1	TRNAC32P	rs113568682-A	NR	5E-9		1.069	[1.05-1.09]	Illumina [6627481] (imputed)	N
1746	chr5	152299753	152299754	rs113568682	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	5q33.1	GRIA1, NMUR2	rs113568682-A	NR	4E-8		1.064	[1.04-1.09]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1747	chr5	152309800	152309801	rs7736377	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	5q33.1	NMUR2, GRIA1	rs7736377-G	0.3215	4E-18		1.0338055		Affymetrix [11880941] (imputed)	N
1747	chr5	152314449	152314450	rs72804781	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Schizophrenia (MTAG)	940,613 European ancestry individuals	NA			rs72804781-?	NR	2E-9				NR [2625067]	N
1747	chr5	152317798	152317799	rs72804786	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	5q33.1	TRNAC32P	rs72804786-G	NR	5E-9	(EA)	1.073	[1.05-1.1]	Illumina [6627481] (imputed)	N
1747	chr5	152323235	152323236	rs10515678	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Schizophrenia (MTAG)	at least 33,640 European ancestry cases, at least 43,456 European ancestry controls	NA	5q33.1	NR	rs10515678-T	0.2833	2E-9		0.07171749	[0.048-0.095] unit decrease	NR [NR]	N
1747	chr5	152323235	152323236	rs10515678	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	5q33.1	NR	rs10515678-?	NR	8E-9		1.0711111	[1.05-1.09]	Affymetrix, Illumina [12447948] (imputed)	N
1747	chr5	152412844	152412845	rs12717867	35043453	Qi G	2022-01-18	Genet Epidemiol	Genome-wide association studies of 27 accelerometry-derived physical activity measurements identified novel loci and genetic mechanisms.	Light-intensity physical activity duration	88,411 European ancestry individuals	NA	5q33.1		rs12717867-G	0.453	6E-10		0.029	unit decrease	Affymetrix [8951705] (imputed)	N
1748	chr5	152438212	152438213	rs13190655	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental longevity (combined parental age at death)	45,627 middle-aged British individuals	NA	5q33.1	NR	rs13190655-?	NR	5E-6		0.08521	[0.049-0.122] unit decrease	Affymetrix [9658292] (imputed)	N
1748	chr5	152466289	152466290	rs11744443	33693626	Jamieson SE	2021-03-09	Clin Infect Dis	Common and rare genetic variants that could contribute to severe otitis media in an Australian Aboriginal population.	Otitis media	21 Martu ancestry cases, 370 Martu ancestry controls	NA	5q33.1		rs11744443-T	0.47	9E-6				Illumina [6724284] (imputed)	N
1748	chr5	152469588	152469589	rs12186592	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5q33.1	NMUR2	rs12186592-?	NR	8E-6	(TAG 54:3)	0.15543486	[0.087-0.224] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1748	chr5	152482962	152482963	rs76091702	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	5q33.1	intergenic	rs76091702-T	NR	1E-7		1.124	[1.08-1.17]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1748	chr5	152494882	152494883	rs6868545	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	5q33.1	NR	rs6868545-C	NR	7E-7		1.1235955	[NR]	Illumina [7158791] (imputed)	N
1748	chr5	152502309	152502310	rs17578717	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5q33.1	NMUR2	rs17578717-?	NR	3E-6	(TAG 52:3)	0.21301588	[0.12-0.3] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1748	chr5	152503937	152503938	rs57917647	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	5q33.1	NR	rs57917647-?	NR	2E-6				Affymetrix [5486770] (imputed)	N
1748	chr5	152504928	152504929	rs1438949	22952603	Hart AB	2012-08-28	PLoS One	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 10 individuals	NA	5q33.1	intergenic	rs1438949-?	NR	6E-6	(SF8)			Affymetrix [5476100] (imputed)	N
1748	chr5	152510936	152510937	rs1438945	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	5q33.1		rs1438945-A	NR	2E-8		0.0123	[0.008-0.0166] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1748	chr5	152515822	152515823	rs2579040	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	5q33.1		rs2579040-A	NR	8E-10		0.0153	[0.01-0.02] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1748	chr5	152515822	152515823	rs2579040	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	5q33.1	NR	rs2579040-?	NR	2E-11				Affymetrix [~ 8270000] (imputed)	N
1748	chr5	152515822	152515823	rs2579040	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	5q33.1		rs2579040-?	NR	7E-12				NR [~ 8900000] (imputed)	N
1748	chr5	152540353	152540354	rs2910032	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	5q33.1		rs2910032-C	0.475	2E-8		0.007	[0.005-0.009] unit increase	NR [NR] (imputed)	N
1748	chr5	152540353	152540354	rs2910032	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	5q33.1	LINC01470	rs2910032-C	0.482079	3E-10		0.012766	[0.0087-0.0168] unit decrease	NR [16516521] (imputed)	N
1748	chr5	152540353	152540354	rs2910032	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Schizophrenia (MTAG)	at least 33,640 European ancestry cases, at least 43,456 European ancestry controls	NA	5q33.1	NR	rs2910032-T	0.5378	4E-8		0.059579235	[0.038-0.081] unit decrease	NR [NR]	N
1748	chr5	152540353	152540354	rs2910032	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	67,764 individuals	NA	5q33.1	NR	rs2910032-?		3E-9				NR [8377093]	N
1748	chr5	152540353	152540354	rs2910032	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Bipolar disorder (MTAG)	65,682 individuals	NA	5q33.1	NR	rs2910032-?		4E-8				NR [520857]	N
1748	chr5	152540353	152540354	rs2910032	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	5q33.1	Intergenic	rs2910032-?		4E-8				NR [6786993] (imputed)	N
1748	chr5	152540353	152540354	rs2910032	31268507	Periyasamy S	2019-07-03	JAMA Psychiatry	Association of Schizophrenia Risk With Disordered Niacin Metabolism in an Indian Genome-wide Association Study.	Schizophrenia	816 Indian ancestry cases, 900 Indian ancestry controls, 505 Indian ancestry cases and 871 Indian ancestry controls from 405 families, up to 36,989 European and unknown ancestry cases, up to 113,075 European and unknown ancestry controls	NA	5q33.1	NR	rs2910032-?	NR	2E-9				Illumina [up to 5582932] (imputed)	N
1748	chr5	152540353	152540354	rs2910032	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	5q33.1		rs2910032-T	0.5184	6E-18		0.019	[0.015-0.023] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
1748	chr5	152540353	152540354	rs2910032	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	5q33.1	NMUR2, GRIA1	rs2910032-T	0.5185	6E-14		1.0294		Affymetrix [11880941] (imputed)	N
1748	chr5	152540353	152540354	rs2910032	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	5q33.1	GRIA1	rs2910032-C	NR	6E-9		1.0582011	[1.04-1.08]	Illumina [6627481] (imputed)	N
1748	chr5	152540353	152540354	rs2910032	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	5q33.1	GRIA1	rs2910032-C	NR	5E-9	(EA)	1.0650761	[1.04-1.09]	Illumina [6627481] (imputed)	N
1748	chr5	152540353	152540354	rs2910032	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	5q33.1	GRIA1	rs2910032-C	NR	1E-9		1.0604454	[1.04-1.08]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1748	chr5	152540353	152540354	rs2910032	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	5q33.1	intergenic	rs2910032-?		1E-9		1.0638298	[1.04-1.09]	Affymetrix, Illumina [NR]	N
1748	chr5	152540353	152540354	rs2910032	23974872	Ripke S	2013-08-25	Nat Genet	Genome-wide association analysis identifies 13 new risk loci for schizophrenia.	Schizophrenia	5,001 European ancestry cases, 6,243 European ancestry controls, 8,832 cases, 12,067 controls	4,801 European ancestry cases, 4,741 European ancestry controls, 2,612 European and unknown ancestry cases, 15,021 European and unknown ancestry controls, 581 trios	5q33.1	intergenic	rs2910032-C	0.469	4E-8		1.08	[1.05-1.11]	Affymetrix, Illumina [9871789]	N
1748	chr5	152548820	152548821	rs2973139	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (mother's age at death)	270,548 European ancestry individuals	NA	5q33.1	NR	rs2973139-G	NR	6E-6		0.01573	[0.0089-0.0225] unit increase	Illumina [541493]	N
1748	chr5	152550203	152550204	rs1422560	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	5q33.1	NR	rs1422560-?	NR	1E-6		4.839	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1748	chr5	152553705	152553706	rs10070616	26835600	Hu Y	2016-02-02	Nat Commun	GWAS of 89,283 individuals identifies genetic variants associated with self-reporting of being a morning person.	Morning vs. evening chronotype	38,937 European ancestry morning chronotype individuals, 50,346 European ancestry evening chronotype individuals	NA	5q33.1	NR	rs10070616-?	NR	1E-7				Illumina [7427422] (imputed)	N
1748	chr5	152557255	152557256	rs112568625	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	5q33.1	NR	rs112568625-?	NR	3E-8				Illumina [7760689] (imputed)	N
1748	chr5	152560334	152560339	rs374343949	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental longevity (combined parental age at death)	45,627 middle-aged British individuals	NA	5q33.1	NR	rs374343949-?	NR	6E-6		0.04266	[0.024-0.061] unit decrease	Affymetrix [9658292] (imputed)	N
1749	chr5	152569966	152569967	rs1895270	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	5q33.1	GRIA1	rs1895270-A	0.372	2E-8		0.0069	[0.0045-0.0093] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
1749	chr5	152583656	152583657	rs74864822	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs anorexia nervosa (ordinary least squares (OLS))	40,675 schizophrenia cases, 16,992 anorexia nervosa cases	NA	5q33.1		rs74864822-?	NR	1E-8		0.0188	NR unit increase	NR [4425810] (imputed)	N
1749	chr5	152601913	152601914	rs2927176	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	5q33.1	NR	rs2927176-?	NR	4E-10		1.06109	[1.04-1.08]	Affymetrix, Illumina [12447948] (imputed)	N
1749	chr5	152608618	152608619	rs2973155	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	5q33.1	NR	rs2973155-C	NR	1E-9		1.0638298	[NR]	Illumina [7158791] (imputed)	N
1749	chr5	152638602	152638603	rs140053818	28957384	Kim SK	2017-09-28	PLoS One	Two genetic loci associated with ankle injury.	Ankle injury	1,421 European ancestry cases, 154 Hispanic/Latino cases, 121 East Asian ancestry cases, 81,843 European ancestry controls, 8,406 Hispanic/Latino controls, 7,397 East Asian ancestry controls	NA	5q33.1	NR	rs140053818-C	NR	8E-6		1.5514		Affymetrix [8183964] (imputed)	N
1749	chr5	152639676	152639677	rs3112530	21782286	Walter S	2011-07-20	Neurobiol Aging	A genome-wide association study of aging.	Aging (time to event)	16,995 European ancestry individuals	NA	5q33.1	GRIA1	rs3112530-G	0.92	7E-6		1.18	[NR]	Affymetrix, Illumina [~ 2500000] (imputed)	N
1749	chr5	152654478	152654479	rs17504622	23974872	Ripke S	2013-08-25	Nat Genet	Genome-wide association analysis identifies 13 new risk loci for schizophrenia.	Schizophrenia	5,001 European ancestry cases, 6,243 European ancestry controls, 8,832 cases, 12,067 controls	4,801 European ancestry cases, 4,741 European ancestry controls, 2,612 European and unknown ancestry cases, 15,021 European and unknown ancestry controls, 581 trios	5q33.1	GRIA1	rs17504622-T	0.05	3E-9		1.238	[1.17-1.31]	Affymetrix, Illumina [9871789]	N
1749	chr5	152664720	152664721	rs13176930	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	65,967 individuals	NA	5q33.1	NR	rs13176930-?		2E-8				NR [8377093]	N
1749	chr5	152664720	152664721	rs13176930	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	5q33.1	GRIA1	rs13176930-T	NR	1E-9	(EA)	1.0718113	[1.05-1.09]	Illumina [6627481] (imputed)	N
1750	chr5	152786519	152786520	rs1423466	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5q33.2	C5orf3	rs1423466-?	NR	8E-6	(TAG 52:3)	0.20468156	[0.11-0.29] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1750	chr5	152795310	152795311	rs76262184	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	5q33.2	NR	rs76262184-?	NR	3E-8		1.08524	[1.06-1.11]	Affymetrix, Illumina [12447948] (imputed)	N
1750	chr5	152797655	152797656	rs12522290	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	5q33.2	intergenic	rs12522290-C		2E-8		1.08	[1.05-1.11]	Affymetrix, Illumina [NR]	N
1750	chr5	152797655	152797656	rs12522290	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	5q33.2	NR	rs12522290-C	NR	5E-8		1.08	[NR]	Illumina [7158791] (imputed)	N
1750	chr5	152798384	152798385	rs1478364	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	5q33.2	GRIA1	rs1478364-T	0.187	2E-9		0.0091	[0.0062-0.012] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
1751	chr5	152861508	152861509	rs6882575	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5q33.2	C5orf3	rs6882575-?	NR	9E-6	(TAG 54:5)	0.19826871	[0.11-0.29] unit increase	Affymetrix [at least 2500000] (imputed)	N
1751	chr5	152861508	152861509	rs6882575	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5q33.2	C5orf3	rs6882575-?	NR	7E-6	(TAG 54:7)	0.20228691	[0.11-0.29] unit increase	Affymetrix [at least 2500000] (imputed)	N
1751	chr5	152869623	152869624	rs3792766	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	5q33.2	NR	rs3792766-?	NR	5E-6		0.0078739	[0.0045-0.0113] unit increase	Affymetrix [805426] (imputed)	N
1751	chr5	152892303	152892304	rs7727515	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	5q33.2	GRIA1	rs7727515-G	NR	6E-7		1.0799136	[1.05-1.11]	Illumina [6627481] (imputed)	N
1751	chr5	152892303	152892304	rs7727515	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	5q33.2	GRIA1	rs7727515-G	NR	3E-7	(EA)	1.0956502	[1.06-1.13]	Illumina [6627481] (imputed)	N
1751	chr5	152899531	152899532	rs13170232	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	5q33.2	NR	rs13170232-T	NR	5E-8		1.098901	[NR]	Illumina [7158791] (imputed)	N
1751	chr5	152940404	152940405	rs10065813	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	5q33.2	GRIA1	rs10065813-A	0.078	8E-6	(NEFA )	0.03	[NR] mmol/L increase	Illumina [899892]	N
1751	chr5	152951199	152951200	rs12153160	26087016	Pappa I	2015-06-18	Am J Med Genet B Neuropsychiatr Genet	A genome-wide approach to children's aggressive behavior: The EAGLE consortium.	Middle childhood and early adolescence aggressive behavior	16,311 European ancestry individuals	NA	5q33.2	GRIA1	rs12153160-A	0.8386	5E-6				Affymetrix, Illumina [up to 3856236] (imputed)	N
1752	chr5	152979553	152979554	rs12658202	19260139	Polasek O	2009-02-01	Croat Med J	Genome-wide association study of anthropometric traits in Korcula Island, Croatia.	Anthropometric traits	898 Korculan (founder/genetic isolate) individuals	NA	5q33.2	AMPA1, GRIA1	rs12658202-?	0.45	9E-6	(height)	0.11	[0.06-0.16] mm increase	Illumina [316730]	N
1752	chr5	152991397	152991398	rs1493383	25866641	Xu W	2015-03-19	Biomark Res	A genome wide association study on Newfoundland colorectal cancer patients' survival outcomes.	Survival in microsatellite instability low/stable colorectal cancer	431 European ancestry cases	NA	5q33.2	GRIA1	rs1493383-?		8E-6	(overall survival)	1.81	[1.39-2.35]	Illumina [729737]	N
1752	chr5	153048887	153048888	rs7736304	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	5q33.2	GRIA1	rs7736304-C	0.955	3E-6	(AA)	0.306	NR unit increase	Illumina [NR] (imputed)	N
1752	chr5	153057547	153057548	rs12189362	21658281	Aouizerat BE	2011-06-10	BMC Cardiovasc Disord	GWAS for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease.	Sudden cardiac arrest	88 European ancestry cases, 517 European ancestry controls	NA	5q33.2	GRIA1	rs12189362-?	0.12	3E-10	(Recessive)	1.5	[1.32-1.69]	Affymetrix [319222]	N
1752	chr5	153063801	153063802	rs17594729	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5q33.2	C5orf3	rs17594729-?	NR	8E-6	(LPC 20:3)	0.24268927	[0.14-0.35] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1752	chr5	153063801	153063802	rs17594729	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5q33.2	C5orf3	rs17594729-?	NR	4E-6	(LPE 16:0)	0.25356278	[0.15-0.36] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1752	chr5	153086141	153086142	rs7702033	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	5q33.2		rs7702033-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1753	chr5	153093997	153093998	rs4502882	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	5q33.2	NR	rs4502882-C	0.3422	8E-10		1.0395011	[1.03-1.05]	Affymetrix, Illumina [NR] (imputed)	N
1753	chr5	153099016	153099017	rs12517168	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	5q33.2	NR	rs12517168-G	0.543803	8E-10		0.0118451	[0.0081-0.0156] unit increase	NR [NR]	N
1753	chr5	153100026	153100027	rs72802696	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	5q33.2	Intergenic	rs72802696-A	0.9763	5E-9	(MTAG)	0.0257	[0.017-0.034] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1753	chr5	153105924	153105925	rs560119570	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (hospitalized covid vs population)	613 European ancestry cases, 680,416 European ancestry controls, 140 Hispanic or Latin American cases, 94,327 Hispanic or Latin American controls, 49 Black or African American cases, 22,410 Black or African American controls	NA	5q33.2		rs560119570-?	NR	5E-6		1.3767594	[0.79-1.97] unit decrease	Illumina [9875426] (imputed)	N
1753	chr5	153105924	153105925	rs560119570	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid respiratory support vs population)	495 European ancestry cases, 680,440 European ancestry controls, 102 Hispanic or Latin American cases, 94,330 Hispanic or Latin American controls, 39 Black or African American cases, 22,410 Black or African American controls	NA	5q33.2		rs560119570-?	NR	1E-7		1.6718858	[1.06-2.29] unit decrease	Illumina [9842460] (imputed)	N
1753	chr5	153108557	153108558	rs13186637	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		5q33.2	GRIA1	rs13186637-T	0.59595	2E-9		0.00868308	[0.0059-0.0115] unit increase	Affymetrix [12370749]	N
1753	chr5	153160425	153160426	rs56968997	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	5q33.2	NR	rs56968997-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
1753	chr5	153167594	153167595	rs2126165	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	5q33.2	GRIA1	rs2126165-A	0.4889	4E-11		0.002	[0.0014-0.0026] unit decrease	Affymetrix [15275733] (imputed)	N
1753	chr5	153170373	153170374	rs4958351	20592726	Chen SH	2010-06-30	Clin Pharmacol Ther	Genetic variations in GRIA1 on chromosome 5q33 related to asparaginase hypersensitivity.	Asparaginase hypersensitivity in acute lymphoblastic leukemia	211 European ancestry child cases, 40 Black child cases, 46 Hispanic child cases, 4 Asian ancestry child cases, 21 child cases	99 European ancestry child cases, 33 Black child cases, 24 Hispanic child cases, 2 Asian ancestry child cases, 5 child cases	5q33.2	GRIA1	rs4958351-A	0.27	4E-7		1.75	[1.41-2.17]	Affymetrix [364033]	N
1753	chr5	153195846	153195847	rs544388919	33075057	Li X	2020-10-19	PLoS Genet	Automated feature extraction from population wearable device data identified novel loci associated with sleep and circadian rhythms.	Sleep (1/3-day periodicity)	90,515 individuals	NA	5q33.2	GRIA1	rs544388919-G	NR	5E-10		0.438	[0.3-0.58] unit increase	NR [11024754] (imputed)	N
1753	chr5	153198035	153198035	rs10637761	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	5q33.2		rs10637761-ACT	NR	1E-9		0.0149	[0.01-0.02] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
1753	chr5	153209523	153209524	rs144839912	34941638	Avasthi KK	2021-12-08	Pediatr Rep	Identification of Novel Genomic Variations in Susceptibility to Nonsyndromic Cleft Lip and Palate Patients.	Nonsyndromic cleft lip with or without cleft palate	86 Indian ancestry cases, 10 Indian ancestry controls	NA	5q33.2		rs144839912-?	NR	3E-7				Affymetrix [810906]	N
1753	chr5	153213195	153213196	rs2926864	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	5q33.2	NR	rs2926864-A	0.3372	3E-11		0.017481247	[0.012-0.023] unit increase	Affymetrix [10549349] (imputed)	N
1753	chr5	153213648	153213649	rs2964007	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	5q33.2	GRIA1	rs2964007-A	0.338603	7E-12		0.0138582	[0.0099-0.0178] unit decrease	Affymetrix [NR] (imputed)	N
1753	chr5	153222232	153222233	rs11167642	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	5q33.2	NA	rs11167642-T	0.8088	5E-9	(Female)	1.057	[1.04-1.07]	Affymetrix, Illumina [NR] (imputed)	N
1754	chr5	153249952	153249953	rs184243355	28369058	Folkersen L	2017-04-03	PLoS Genet	Mapping of 79 loci for 83 plasma protein biomarkers in cardiovascular disease.	Blood protein levels in cardiovascular risk	3,394 European ancestry individuals	2,639 individuals	5q33.2	intergenic	rs184243355-T	0.94	2E-8		0.41	unit decrease	Illumina [5270624] (imputed)	N
1754	chr5	153298024	153298025	rs6880062	30116032	Erlangsen A	2018-08-16	Mol Psychiatry	Genetics of suicide attempts in individuals with and without mental disorders: a population-based genome-wide association study.	Suicide attempts	6,024 European ancestry cases, 44,240 European ancestry controls	NA	5q33.2	intergenic	rs6880062-A	0.3107	5E-8	(model 1)	1.125619	[1.04-1.21]	Illumina [11601089] (imputed)	N
1754	chr5	153300005	153300006	rs7712987	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	5q33.2	NR	rs7712987-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
1754	chr5	153304757	153304758	rs182902112	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	5q33.2		rs182902112-A	0.0186	1E-8		0.03	[0.02-0.04] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1754	chr5	153322872	153322873	rs184603073	33075057	Li X	2020-10-19	PLoS Genet	Automated feature extraction from population wearable device data identified novel loci associated with sleep and circadian rhythms.	Sleep (1/3-day periodicity)	90,515 individuals	NA	5q33.2	LINC01861	rs184603073-A	NR	2E-8		0.399	[0.26-0.54] unit increase	NR [11024754] (imputed)	N
1755	chr5	153358225	153358226	rs17115481	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA		NR	rs17115481-?	NR	2E-11				Affymetrix [~ 8270000] (imputed)	N
1755	chr5	153360229	153360230	rs286965	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	5q33.2	FAM114A2	rs286965-T	0.36779	4E-15		0.0159839	[0.012-0.02] unit increase	Affymetrix [NR] (imputed)	N
1755	chr5	153370390	153370391	rs6580046	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	5q33.2	Intergenic	rs6580046-A	0.0738	3E-8	(MTAG)	0.0138	[0.0089-0.0187] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1755	chr5	153377597	153377598	rs4594908	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	5q33.2	NR	rs4594908-A	0.367939	2E-24		0.019804	[0.016-0.024] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
1755	chr5	153396773	153396774	rs2578384	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q33.2	NR	rs2578384-A	0.365667	1E-25				Affymetrix, Illumina [22063850] (imputed)	N
1755	chr5	153413389	153413390	rs2578377	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	5q33.2	FAM114A2	rs2578377-T	0.631387	5E-20		0.020942615	[0.016-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1755	chr5	153413389	153413390	rs2578377	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	5q33.2		rs2578377-?	NR	5E-27				NR [~ 8900000] (imputed)	N
1755	chr5	153413389	153413390	rs2578377	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	5q33.2	FAM114A2	rs2578377-T	0.633	4E-10		0.026062	[0.018-0.034] unit increase	Affymetrix [16832071] (imputed)	N
1755	chr5	153467445	153467446	rs143373756	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	5q33.2	MFAP3	rs143373756-C	0.9812	4E-8		0.006	[0.0038-0.0082] unit decrease	Affymetrix [15275733] (imputed)	N
1756	chr5	153507704	153507705	rs6862346	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	5q33.2	Intergenic	rs6862346-A	0.404	2E-8	(MTAG)	0.0095	[0.0062-0.0128] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1756	chr5	153509595	153509596	rs2033195	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	5q33.2	NR	rs2033195-C	0.419	7E-9		0.00631642	[0.0042-0.0085] unit decrease	NR [9732723] (imputed)	N
1756	chr5	153509595	153509596	rs2033195	21701570	Ng MC	2011-06-23	Obesity (Silver Spring)	Genome-wide association of BMI in African Americans.	Body mass index	1,715 African American individuals	3,274 African American individuals	5q33.2	MFAP3, GALNT10	rs2033195-C	0.57	6E-6		0.094	[0.05-0.13] s.d. increase	Affymetrix [746626]	N
1756	chr5	153517177	153517178	rs815610	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	5q33.2	NR	rs815610-C	NR	2E-12		0.02	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
1756	chr5	153517177	153517178	rs815610	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	5q33.2	NR	rs815610-C	0.440984092532198	4E-12		0.02054945	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1756	chr5	153534562	153534563	rs62382095	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	5q33.2	NR	rs62382095-?	NR	5E-10				Affymetrix [~ 8270000] (imputed)	N
1756	chr5	153537892	153537893	rs7715256	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	5q33.2		rs7715256-T	NR	5E-11		0.0133	[0.0094-0.0172] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1756	chr5	153537892	153537893	rs7715256	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	5q33.2		rs7715256-T	NR	1E-11		0.0156	[0.011-0.02] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1756	chr5	153537892	153537893	rs7715256	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	5q33.2	GALNT10	rs7715256-T	0.574	2E-6				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1756	chr5	153537892	153537893	rs7715256	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	5q33.2	GALNT10	rs7715256-T	0.574	4E-6		0.0151	[0.0086-0.0216] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1756	chr5	153537892	153537893	rs7715256	26604143	Felix JF	2015-11-24	Hum Mol Genet	Genome-wide association analysis identifies three new susceptibility loci for childhood body mass index.	Childhood body mass index	34,744 European ancestry children	11,313 European ancestry children	5q33.2	NR	rs7715256-G	NR	5E-7				Affymetrix, Illumina [2499691] (imputed)	N
1756	chr5	153537892	153537893	rs7715256	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	5q33.2	GALNT10	rs7715256-G	0.422	9E-9		0.017	[0.011-0.022] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1756	chr5	153537892	153537893	rs7715256	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	5q33.2	GALNT10	rs7715256-G	0.421	2E-7	(EA)	0.016	[0.01-0.022] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1756	chr5	153537892	153537893	rs7715256	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	5q33.2	GALNT10	rs7715256-G	0.42	6E-6	(EA, women)	0.018	[0.01-0.026] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1756	chr5	153538240	153538241	rs7719067	33045005	Vogelezang S	2020-10-12	PLoS Genet	Novel loci for childhood body mass index and shared heritability with adult cardiometabolic traits.	Childhood body mass index	39,620 European ancestry individuals	NA	5q33.2	MFAP3	rs7719067-A	0.43	4E-7		0.038	[0.022-0.054] unit increase	Affymetrix, Illumina [8227808] (imputed)	N
1756	chr5	153538240	153538241	rs7719067	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	5q33.2	MFAP3	rs7719067-A	0.427582	2E-21		0.0134519	[0.011-0.016] unit increase	Affymetrix [12370749]	N
1756	chr5	153538240	153538241	rs7719067	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		5q33.2	MFAP3	rs7719067-A	0.427582	2E-11		0.0093096	[0.0066-0.012] unit increase	Affymetrix [12370749]	N
1756	chr5	153540024	153540025	rs4569924	26604143	Felix JF	2015-11-24	Hum Mol Genet	Genome-wide association analysis identifies three new susceptibility loci for childhood body mass index.	Childhood body mass index	34,744 European ancestry children	11,313 European ancestry children	5q33.2	GALNT10	rs4569924-T	0.43	3E-6		0.032	[0.018-0.046] unit increase	Affymetrix, Illumina [2499691] (imputed)	N
1756	chr5	153543465	153543466	rs7708584	28430825	Ng MCY	2017-04-21	PLoS Genet	Discovery and fine-mapping of adiposity loci using high density imputation of genome-wide association studies in individuals of African ancestry: African Ancestry Anthropometry Genetics Consortium.	Body mass index (adult)	16,559 African ancestry men, 26,193 African ancestry women	2,458 African ancestry men, 7,685 African ancestry women, 152,893 European ancestry men, 171,977 European ancestry women	5q33.2	GALNT10	rs7708584-A	0.305	1E-8	(AA,Women)	0.051	[0.033-0.069] unit increase	Affymetrix, Illumina [17972087] (imputed)	N
1756	chr5	153543465	153543466	rs7708584	28430825	Ng MCY	2017-04-21	PLoS Genet	Discovery and fine-mapping of adiposity loci using high density imputation of genome-wide association studies in individuals of African ancestry: African Ancestry Anthropometry Genetics Consortium.	Body mass index (adult)	16,559 African ancestry men, 26,193 African ancestry women	2,458 African ancestry men, 7,685 African ancestry women, 152,893 European ancestry men, 171,977 European ancestry women	5q33.2	GALNT10	rs7708584-A	0.304	4E-15		0.054	[0.04-0.068] unit increase	Affymetrix, Illumina [17972087] (imputed)	N
1756	chr5	153543465	153543466	rs7708584	28430825	Ng MCY	2017-04-21	PLoS Genet	Discovery and fine-mapping of adiposity loci using high density imputation of genome-wide association studies in individuals of African ancestry: African Ancestry Anthropometry Genetics Consortium.	Body mass index (adult)	16,559 African ancestry men, 26,193 African ancestry women	2,458 African ancestry men, 7,685 African ancestry women, 152,893 European ancestry men, 171,977 European ancestry women	5q33.2	GALNT10	rs7708584-A	0.304	4E-14	(AA)	0.054	[0.04-0.068] unit increase	Affymetrix, Illumina [17972087] (imputed)	N
1756	chr5	153543465	153543466	rs7708584	28430825	Ng MCY	2017-04-21	PLoS Genet	Discovery and fine-mapping of adiposity loci using high density imputation of genome-wide association studies in individuals of African ancestry: African Ancestry Anthropometry Genetics Consortium.	Body mass index (adult)	16,559 African ancestry men, 26,193 African ancestry women	2,458 African ancestry men, 7,685 African ancestry women, 152,893 European ancestry men, 171,977 European ancestry women	5q33.2	GALNT10	rs7708584-A	0.304	1E-7	(AA, Men)	0.062	[0.038-0.086] unit increase	Affymetrix, Illumina [17972087] (imputed)	N
1756	chr5	153543465	153543466	rs7708584	23583978	Monda KL	2013-04-14	Nat Genet	A meta-analysis identifies new loci associated with body mass index in individuals of African ancestry.	Body mass index	37,956 African American individuals, 1,188 Nigerian ancestry individuals	27,661 African America/Afro-Caribbean individuals, 4,607 Sub-Saharan African ancestry individuals, 123,706 European ancestry inidividuals	5q33.2	GALNT10	rs7708584-A	0.42	5E-14		0.021	[0.012-0.030] unit increase	Affymetrix, Illumina [3283202] (imputed)	N
1756	chr5	153544511	153544512	rs4958702	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	5q33.2		rs4958702-?	NR	8E-17				NR [~ 8900000] (imputed)	N
1756	chr5	153546807	153546808	rs10044136	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	5q33.2	NA	rs10044136-C	0.565	3E-21		0.0162	[0.013-0.02] unit decrease	NR [~ 27400000] (imputed)	N
1756	chr5	153546899	153546900	rs7707628	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	5q33.2		rs7707628-T	0.35	2E-11				NR [NR] (imputed)	N
1756	chr5	153546899	153546900	rs7707628	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	5q33.2		rs7707628-T	0.35	9E-13		0.011	% increase	NR [NR] (imputed)	N
1756	chr5	153547305	153547306	rs11957885	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	5q33.2	NR	rs11957885-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1756	chr5	153547408	153547409	rs7701886	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	5q33.2	NA	rs7701886-A	0.5431	5E-21		0.0161	[0.013-0.019] unit decrease	NR [~ 27400000] (imputed)	N
1756	chr5	153547408	153547409	rs7701886	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	5q33.2	GALNT10	rs7701886-A	0.58	5E-8		0.03	[0.02-0.04] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
1756	chr5	153547494	153547495	rs1428121	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	5q33.2	NA	rs1428121-A	0.5649	3E-21		0.0162	[0.013-0.02] unit decrease	NR [~ 27400000] (imputed)	N
1756	chr5	153569203	153569204	rs150512724	31497858	Dumitrescu L	2019-09-01	Brain	Sex differences in the genetic predictors of Alzheimer's pathology.	Neurofibrillary tangles	3,275 European ancestry women	NA	5q33.2	MFAP3, GALNT10	rs150512724-A	0.0142	1E-6		1.263071	[0.75-1.77] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1756	chr5	153601261	153601262	rs34509057	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Autism spectrum disorder (MTAG)	60,817 individuals	NA	5q33.2	NR	rs34509057-?		1E-8				NR [520857]	N
1756	chr5	153601261	153601262	rs34509057	30804558	Grove J	2019-02-25	Nat Genet	Identification of common genetic risk variants for autism spectrum disorder.	Autism spectrum disorder	18,381 European ancestry cases, 27,969 European ancestry controls	2,119 European ancestry cases, 142,379 European ancestry controls	5q33.2	Intergenic	rs34509057-A	0.226	6E-6		1.071	[NR]	Illumina [9112387] (imputed)	N
1756	chr5	153606931	153606932	rs2081015	25898001	Dong C	2015-04-16	Atherosclerosis	Genetic variants in LEKR1 and GALNT10 modulate sex-difference in carotid intima-media thickness: a genome-wide interaction study.	Carotid artery intima media thickness (sex interaction)	931 Hispanic individuals	153 European ancestry individuals, 257 Black individuals	5q33.2	GALNT10	rs2081015-T	0.43	5E-6	(Model 1, Hispanics)	0.035	[0.019-0.051] unit decrease	Affymetrix [731037]	N
1756	chr5	153606931	153606932	rs2081015	25898001	Dong C	2015-04-16	Atherosclerosis	Genetic variants in LEKR1 and GALNT10 modulate sex-difference in carotid intima-media thickness: a genome-wide interaction study.	Carotid artery intima media thickness (sex interaction)	931 Hispanic individuals	153 European ancestry individuals, 257 Black individuals	5q33.2	GALNT10	rs2081015-T	0.41	5E-7	(Model 1)	0.033	[0.019-0.047] unit decrease	Affymetrix [731037]	N
1757	chr5	153640045	153640046	rs2434529	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	5q33.2	GALNT10	rs2434529-?		3E-9		1.0752687	[1.05-1.1]	Affymetrix, Illumina [NR]	N
1757	chr5	153665765	153665766	rs76694263	29503163	Yu H	2018-03-01	Lancet Psychiatry	Five novel loci associated with antipsychotic treatment response in patients with schizophrenia: a genome-wide association study.	Response to quetiapine in schizophrenia	386 Han Chinese ancestry cases	NA	5q33.2	GALNT10	rs76694263-G	NR	1E-6		12.474	[7.49-17.46] unit decrease	Illumina [6097251] (imputed)	N
1757	chr5	153666789	153666790	rs58007470	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Anxiety	at least 23,606 European ancestry cases, at least 113,351 European ancestry controls	624,615 European ancestry cases, 1,310,854 European ancestry controls	5q33.2	GALNT10	rs58007470-C	0.2565	2E-7		0.0143423155	[0.0082-0.0205] unit decrease	NR [9417325] (imputed)	N
1757	chr5	153666789	153666790	rs58007470	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	5q33.2	GALNT10	rs58007470-T	0.218522	3E-8		5.54	z score increase	NR [10847151] (imputed)	N
1757	chr5	153669154	153669155	rs6883228	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling tense	371,318 European ancestry individuals	NA	5q33.2	GALNT10	rs6883228-C	0.183199	4E-8		5.5	z score increase	NR [10847151] (imputed)	N
1757	chr5	153680746	153680747	rs11740474	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	67,764 individuals	NA	5q33.2	NR	rs11740474-?		2E-9				NR [8377093]	N
1757	chr5	153680746	153680747	rs11740474	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	65,967 individuals	NA	5q33.2	NR	rs11740474-?		2E-9				NR [8377093]	N
1757	chr5	153680746	153680747	rs11740474	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	5q33.2	GALNT10	rs11740474-?	NR	2E-8		0.011435834	[0.0074-0.0155] unit increase	NR [7306098]	N
1757	chr5	153680746	153680747	rs11740474	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	5q33.2	GALNT10	rs11740474-T	NR	2E-8	(EA)	1.0647359	[1.04-1.09]	Illumina [6627481] (imputed)	N
1757	chr5	153680746	153680747	rs11740474	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	5q33.2	GALNT10	rs11740474-T	NR	2E-8		1.0626993	[1.04-1.08]	Illumina [6627481] (imputed)	N
1757	chr5	153680746	153680747	rs11740474	29483656	Pardinas AF	2018-02-26	Nat Genet	Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.	Schizophrenia	40,675 European ancestry cases, 64,643 European ancestry controls	1,651 European ancestry cases, 4,111 cases, 142,717 European ancestry controls, 11,507 controls	5q33.2	GALNT10	rs11740474-?	NR	1E-6				Illumina [8000000] (imputed)	N
1757	chr5	153680746	153680747	rs11740474	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	5q33.2	GALNT10	rs11740474-T	NR	2E-8		1.0626993	[1.04-1.08]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1757	chr5	153680746	153680747	rs11740474	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	5q33.2	GALNT10	rs11740474-?		2E-10		1.0638298	[1.04-1.09]	Affymetrix, Illumina [NR]	N
1757	chr5	153680746	153680747	rs11740474	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	5q33.2	NR	rs11740474-T	NR	5E-8		1.0638298	[NR]	Illumina [7158791] (imputed)	N
1757	chr5	153680746	153680747	rs11740474	25056061	Ripke S	2014-07-22	Nature	Biological insights from 108 schizophrenia-associated genetic loci.	Schizophrenia	32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	1,513 European ancestry cases, 66,236 European ancestry controls	5q33.2	GALNT10	rs11740474-T	0.379	3E-8		1.0615711	[1.04-1.08]	Affymetrix, Illumina [9005918] (imputed)	N
1757	chr5	153685525	153685526	rs6864084	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	5q33.2	NR	rs6864084-?	NR	4E-8		1.07638	[1.05-1.1]	Affymetrix, Illumina [12447948] (imputed)	N
1757	chr5	153685525	153685526	rs6864084	31268507	Periyasamy S	2019-07-03	JAMA Psychiatry	Association of Schizophrenia Risk With Disordered Niacin Metabolism in an Indian Genome-wide Association Study.	Schizophrenia	816 Indian ancestry cases, 900 Indian ancestry controls, 505 Indian ancestry cases and 871 Indian ancestry controls from 405 families, up to 36,989 European and unknown ancestry cases, up to 113,075 European and unknown ancestry controls	NA	5q33.2	NR	rs6864084-?	NR	1E-7				Illumina [up to 5582932] (imputed)	N
1757	chr5	153733979	153733980	rs1035433	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Systolic blood pressure (baseline)	5,304 African American individuals, 13,137 European ancestry individuals, 1,317 Hispanic individuals, 1,439 admixed individuals, 703 Chinese ancestry individuals	6,500 African American individuals, 2,451 European ancestry individuals, 2,869 Hispanic individuals	5q33.2	NR	rs1035433-A	0.9141	6E-7		2.0578	[1.25-2.87] mmHg decrease	Affymetrix, Illumina [NR] (imputed)	N
1758	chr5	153800512	153800513	rs7244	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	5q33.2	GALNT10	rs7244-G	0.825835	6E-9		0.0152854	[0.01-0.02] unit decrease	Affymetrix [NR] (imputed)	N
1758	chr5	153811489	153811490	rs10037670	23942779	McGue M	2013-08-14	Behav Genet	A genome-wide association study of behavioral disinhibition.	Behavioural disinhibition (generation interaction)	3,852 European ancestry parents, 3,336 European ancestry offspring	NA	5q33.2	GALNT10	rs10037670-G	0.208	4E-6	(Illicit drug use)			Illumina [527829]	N
1758	chr5	153829657	153829658	rs6580082	28030426	Mahmoudpour SH	2017-03-27	Pharmacogenet Genomics	Meta-analysis of genome-wide association studies on the intolerance of angiotensin-converting enzyme inhibitors.	Angiotensin-converting enzyme inhibitor intolerance	972 European ancestry intolerant individuals, 4,189 European ancestry tolerant individuals	NA	5q33.2	SAP30L	rs6580082-?	0.468246	3E-6		1.297159	[1.162544-1.447362]	Affymetrix, Illumina [NR] (imputed)	N
1758	chr5	153837105	153837106	rs148763909	23535033	Sherva R	2013-03-24	Alzheimers Dement	Genome-wide association study of the rate of cognitive decline in Alzheimer's disease.	Alzheimer's disease (cognitive decline)	303 European ancestry cases		5q33.2	SAP30L	rs148763909-?	0.03	1E-8		0.15	unit decrease	Illumina [NR] (imputed)	N
1758	chr5	153865728	153865729	rs6580083	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	QRS duration	3,274 African American individuals, 13,420 Hispanic/Latino individuals, 126 Asian ancestry individuals, 226 Native American ancestry individuals	NA	5q33.2	NR	rs6580083-?	NR	2E-8		0.5267006	[0.34-0.71] unit decrease	Illumina [26566045] (imputed)	N
1758	chr5	153865728	153865729	rs6580083	25035420	Hong KW	2014-07-17	Hum Mol Genet	Identification of three novel genetic variations associated with electrocardiographic traits (QRS duration and PR interval) in East Asians.	QRS duration	6,085 Korean ancestry individuals	7,295 Japanese ancestry individuals	5q33.2	HAND1, SAP30L	rs6580083-G	0.30	1E-6		0.85	[0.50-1.20] unit decrease	Affymetrix [2100000] (imputed)	N
1758	chr5	153867220	153867221	rs13178677	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	5q33.2		rs13178677-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1758	chr5	153868261	153868262	rs4958741	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Chin dimples	58,032 European ancestry cases, 13,457 European ancestry controls	NA	5q33.2	HAND1, LARP1	rs4958741-?	NR	1E-8		1.108	[1.069-1.147]	Illumina [13537761] (imputed)	N
1758	chr5	153869039	153869040	rs13165478	31251759	Swenson BR	2019-06-28	PLoS One	GWAS of QRS duration identifies new loci specific to Hispanic/Latino populations.	QRS duration	15,124 Hispanic or Latin American individuals	NA	5q33.2	HAND1	rs13165478-G	0.67	3E-11		0.68	[0.48-0.88] ms increase	Affymetrix, Illumina [~ 21000000] (imputed)	N
1758	chr5	153869039	153869040	rs13165478	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	QRS duration	3,274 African American individuals, 13,420 Hispanic/Latino individuals, 126 Asian ancestry individuals, 226 Native American ancestry individuals	NA	5q33.2	NR	rs13165478-?	NR	7E-16		0.7719773	[0.58-0.96] unit decrease	Illumina [26566045] (imputed)	N
1758	chr5	153869039	153869040	rs13165478	30012220	Prins BP	2018-07-17	Genome Biol	Exome-chip meta-analysis identifies novel loci associated with cardiac conduction, including ADAMTS6.	QRS duration	up to 77,898 European ancestry individuals, up to 7,695 African American individuals	up to 111,874 European ancestry individuals	5q33.2	intergenic	rs13165478-A	0.369635	2E-70		0.594503	[0.53-0.66] ms decrease	Illumina [162199]	N
1758	chr5	153869039	153869040	rs13165478	30012220	Prins BP	2018-07-17	Genome Biol	Exome-chip meta-analysis identifies novel loci associated with cardiac conduction, including ADAMTS6.	QRS duration	77,898 European ancestry individuals	NA	5q33.2	intergenic	rs13165478-A	0.36149317351611	7E-47		0.675719	[0.58-0.77] ms decrease	Illumina [213295]	N
1758	chr5	153869039	153869040	rs13165478	30012220	Prins BP	2018-07-17	Genome Biol	Exome-chip meta-analysis identifies novel loci associated with cardiac conduction, including ADAMTS6.	QRS duration	7,695 African American individuals	NA	5q33.2	intergenic	rs13165478-A	0.532123465691118	2E-6		0.7	[0.41-0.99] ms decrease	Illumina [164799]	N
1758	chr5	153869039	153869040	rs13165478	29622589	Tereshchenko LG	2018-04-05	J Am Heart Assoc	Genome-Wide Associations of Global Electrical Heterogeneity ECG Phenotype: The ARIC (Atherosclerosis Risk in Communities) Study and CHS (Cardiovascular Health Study).	Global electrical heterogeneity phenotypes	3,057 Black individuals, 10,769 European ancestry individuals	NA	5q33.2	HAND1	rs13165478-A	0.4	9E-9	(QRS-T angle)	0.07	[0.046-0.094] unit decrease	Affymetrix, Illumina [at least 9117794] (imputed)	N
1758	chr5	153869039	153869040	rs13165478	27659466	van der Harst P	2016-09-27	J Am Coll Cardiol	52 Genetic Loci Influencing Myocardial Mass.	QRS duration	59,565 European ancestry individuals, 690 Orcadian (founder/genetic isolate) individuals	13,263 European ancestry individuals, 3,603 African American individuals, 4,619 Indian ancestry individuals	5q33.2	NR	rs13165478-?	NR	8E-19	(EA)			Affymetrix, Illumina, Perlegen [at least 2766983] (imputed)	N
1758	chr5	153869039	153869040	rs13165478	27659466	van der Harst P	2016-09-27	J Am Coll Cardiol	52 Genetic Loci Influencing Myocardial Mass.	QRS complex (Cornell)	up to 58,172 European ancestry individuals, up to 690 Orcadian (founder/genetic isolate) individuals	13,263 European ancestry individuals, 3,603 African American individuals, 4,619 Indian ancestry individuals	5q33.2	NR	rs13165478-?	NR	4E-24	(EA)			Affymetrix, Illumina, Perlegen [2766983] (imputed)	N
1758	chr5	153869622	153869623	rs62379939	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	5q33.2	NR	rs62379939-?	NR	4E-8				Illumina [7760689] (imputed)	N
1758	chr5	153870478	153870479	rs10035725	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	5q33.2	NR	rs10035725-G	0.497517	8E-14		0.0231266	[0.017-0.029] unit decrease	NR [19129689] (imputed)	N
1758	chr5	153871831	153871832	rs10054375	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5q33.2	HAND1	rs10054375-T	0.632193	8E-11	(-22 ms)	0.0380809	[0.027-0.049] unit decrease	Affymetrix [10000000] (imputed)	N
1758	chr5	153871831	153871832	rs10054375	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5q33.2	HAND1	rs10054375-T	0.632193	6E-15	(-16 ms)	0.043458	[0.032-0.055] unit decrease	Affymetrix [10000000] (imputed)	N
1758	chr5	153871831	153871832	rs10054375	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5q33.2	HAND1	rs10054375-T	0.632193	5E-9	(10 ms)	0.0340066	[0.023-0.045] unit decrease	Affymetrix [10000000] (imputed)	N
1758	chr5	153871831	153871832	rs10054375	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5q33.2	HAND1	rs10054375-T	0.632193	4E-13	(-18 ms)	0.0412797	[0.03-0.053] unit decrease	Affymetrix [10000000] (imputed)	N
1758	chr5	153871831	153871832	rs10054375	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5q33.2	HAND1	rs10054375-T	0.632193	3E-15	(-14 ms)	0.0441626	[0.033-0.055] unit decrease	Affymetrix [10000000] (imputed)	N
1758	chr5	153871831	153871832	rs10054375	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5q33.2	HAND1	rs10054375-T	0.632193	2E-11	(-24 ms)	0.0394617	[0.028-0.051] unit decrease	Affymetrix [10000000] (imputed)	N
1758	chr5	153871831	153871832	rs10054375	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5q33.2	HAND1	rs10054375-T	0.632193	2E-11	(-20 ms)	0.0391227	[0.028-0.05] unit decrease	Affymetrix [10000000] (imputed)	N
1758	chr5	153871831	153871832	rs10054375	32602732	Baldassari AR	2020-06-30	Circ Genom Precis Med	Multi-ethnic Genome-wide Association Study of Decomposed Cardioelectric Phenotypes Illustrates Strategies to Identify and Characterize Evidence of Shared Genetic Effects for Complex Traits.	Electrocardiographic traits (multivariate)	17,873 European ancestry individuals, 12,749 Hispanic individuals, 5,408 African American individuals, 315 Chinese-American individuals	NA	5q33.2	HAND1	rs10054375-?	NR	1E-11				Affymetrix, Illumina [22000000] (imputed)	N
1758	chr5	153871840	153871841	rs10076436	32814899	Meyer HV	2020-08-19	Nature	Genetic and functional insights into the fractal structure of the heart.	Myocardial fractal dimension (slice 4)	18,096 European individuals		5q33.2	NR	rs10076436-G	0.36479	3E-8		0.060318	[0.039-0.082] unit increase	Affymetrix [14134301] (imputed)	N
1758	chr5	153871840	153871841	rs10076436	32814899	Meyer HV	2020-08-19	Nature	Genetic and functional insights into the fractal structure of the heart.	Myocardial fractal dimension (slice 3)	18,096 European individuals		5q33.2	NR	rs10076436-G	0.36479	3E-12		0.075939	[0.055-0.097] unit increase	Affymetrix [14134301] (imputed)	N
1758	chr5	153871840	153871841	rs10076436	32814899	Meyer HV	2020-08-19	Nature	Genetic and functional insights into the fractal structure of the heart.	Myocardial fractal dimension (slice 2)	18,096 European individuals		5q33.2	NR	rs10076436-G	0.36479	1E-7		0.05778	unit increase	Affymetrix [14134301] (imputed)	N
1758	chr5	153871840	153871841	rs10076436	30679814	van Setten J	2019-01-24	Eur J Hum Genet	Genome-wide association meta-analysis of 30,000 samples identifies seven novel loci for quantitative ECG traits.	QRS duration	2,177 Erasmus Rucphen Family (founder/genetic isolate) individuals, 23,332 European ancestry individuals	391 Carlantino (founder/genetic isolate) individuals, 981 Friuli Venezia Giulia (founder/genetic isolate) individuals, 30,760 European ancestry individuals, 2,048 African American individuals	5q33.2	HAND1	rs10076436-G	0.358	1E-18		0.809	[0.63-0.99] unit decrease	Affymetrix, Illumina [at least 19000000] (imputed)	N
1758	chr5	153871840	153871841	rs10076436	29622589	Tereshchenko LG	2018-04-05	J Am Heart Assoc	Genome-Wide Associations of Global Electrical Heterogeneity ECG Phenotype: The ARIC (Atherosclerosis Risk in Communities) Study and CHS (Cardiovascular Health Study).	Global electrical heterogeneity phenotypes	3,057 Black individuals, 10,769 European ancestry individuals	NA	5q33.2	HAND1	rs10076436-C	0.61	2E-20	(SVG azimuth)	0.12	[0.095-0.145] unit increase	Affymetrix, Illumina [at least 9117794] (imputed)	N
1758	chr5	153872169	153872170	rs13185595	27659466	van der Harst P	2016-09-27	J Am Coll Cardiol	52 Genetic Loci Influencing Myocardial Mass.	QRS complex (Cornell)	up to 58,172 European ancestry individuals, up to 690 Orcadian (founder/genetic isolate) individuals	13,263 European ancestry individuals, 3,603 African American individuals, 4,619 Indian ancestry individuals	5q33.2	HAND1	rs13185595-?	NR	2E-24	(EA)	38.4	[31.01-45.79] unit decrease	Affymetrix, Illumina, Perlegen [2766983] (imputed)	N
1758	chr5	153872169	153872170	rs13185595	27577874	Evans DS	2016-08-29	Hum Mol Genet	Fine-mapping, novel loci identification, and SNP association transferability in a genome-wide association study of QRS duration in African Americans.	QRS duration	up to 13,031 African American individuals, 40,407 European ancestry individuals	NA	5q33.2	HAND1	rs13185595-A	0.37	9E-14	(European)	0.56	[NR] millisecond decrease	Affymetrix, Illumina [2955816] (imputed)	N
1758	chr5	153872169	153872170	rs13185595	27577874	Evans DS	2016-08-29	Hum Mol Genet	Fine-mapping, novel loci identification, and SNP association transferability in a genome-wide association study of QRS duration in African Americans.	QRS duration	up to 13,031 African American individuals, 40,407 European ancestry individuals	NA	5q33.2	HAND1	rs13185595-A		4E-16		0.53	[0.41-0.65] millisecond decrease	Affymetrix, Illumina [2955816] (imputed)	N
1758	chr5	153877721	153877722	rs2619732	33669428	Franco LAM	2021-02-16	Int J Mol Sci	Pharmacogenomic Profile and Adverse Drug Reactions in a Prospective Therapeutic Cohort of Chagas Disease Patients Treated with Benznidazole.	Adverse response to benznidazole in Chagas disease	61 Hispanic/Latino or unknown ancestry cases, 29 Hispanic/Latino or unknown ancestry controls	NA	5q33.2	NR	rs2619732-G	NR	1E-6				Affymetrix [at least 811691] (imputed)	N
1759	chr5	153902049	153902050	rs10076602	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5q33.2	HAND1	rs10076602-G	0.730622	5E-8	(-26 ms)	0.0357655	[0.023-0.048] unit decrease	Affymetrix [10000000] (imputed)	N
1759	chr5	153902049	153902050	rs10076602	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5q33.2	HAND1	rs10076602-G	0.730622	2E-8	(-28 ms)	0.0361416	[0.024-0.048] unit decrease	Affymetrix [10000000] (imputed)	N
1759	chr5	153924849	153924850	rs10072750	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	5q33.2	NR	rs10072750-A	0.362428	2E-13		0.0236905	[0.017-0.03] unit increase	NR [19129689] (imputed)	N
1759	chr5	153931555	153931556	rs1846967	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	5q33.2	NR	rs1846967-A	0.03334	9E-14		0.0649113	[0.048-0.082] unit increase	NR [19129689] (imputed)	N
1759	chr5	153937478	153937479	rs143766413	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	5q33.2	Intergenic	rs143766413-C	NR	5E-7	(between families)	5.024	unit increase	Affymetrix [up to 15107142] (imputed)	N
1759	chr5	153938270	153938274	rs199955185	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Monobrow	69,284 European ancestry individuals	NA	5q33.2	HAND1, LARP1	rs199955185-?	NR	2E-20		0.036	[0.043-0.028] unit decrease	Illumina [12039491] (imputed)	N
1760	chr5	154020583	154020584	rs11750130	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	5q33.2		rs11750130-?	NR	3E-17				NR [~ 8900000] (imputed)	N
1760	chr5	154023221	154023222	rs59189695	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	5q33.2		rs59189695-A	0.196782	1E-15		0.0177596	[0.012-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1760	chr5	154024043	154024044	rs35018839	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	5q33.2		rs35018839-G	NR	4E-9		0.0194	[0.013-0.026] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
1760	chr5	154025739	154025739	rs534076076	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	5q33.2		rs534076076-CA	0.0403440000000001	9E-20		0.053290173	[0.042-0.065] unit increase	Affymetrix [93095623] (imputed)	N
1760	chr5	154026472	154026473	rs34165383	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	5q33.2		rs34165383-G	NR	2E-69		0.0553	[0.049-0.061] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
1760	chr5	154026472	154026473	rs34165383	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q33.2	NR	rs34165383-G	0.110292	7E-21				Affymetrix, Illumina [24653286] (imputed)	N
1760	chr5	154026472	154026473	rs34165383	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular volume	108,256 Japanese ancestry individuals	NA	5q33.2	MIR3141, MIR1303	rs34165383-?	NR	1E-13		0.04359	[0.032-0.055] unit increase novel	Illumina [6108953] (imputed)	N
1760	chr5	154027215	154027216	rs74417235	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	5q33.2	NR	rs74417235-G	0.094712	2E-21		0.030119	[0.024-0.036] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
1760	chr5	154027215	154027216	rs74417235	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	5q33.2	intergenic	rs74417235-G	0.0952	7E-48		0.08978864	[0.078-0.102] unit increase	Affymetrix [~ 2500000] (imputed)	N
1760	chr5	154027215	154027216	rs74417235	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	5q33.2	intergenic	rs74417235-G	0.0952	2E-39		0.08131392	[0.069-0.093] unit increase	Affymetrix [~ 2500000] (imputed)	N
1760	chr5	154027215	154027216	rs74417235	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin concentration	172,851 European ancestry individuals	NA	5q33.2	intergenic	rs74417235-G	0.0951	9E-19		0.05279493	[0.041-0.064] unit increase	Affymetrix [~ 2500000] (imputed)	N
1760	chr5	154027482	154027482	rs111918234	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	5q33.2		rs111918234-GT	0.86	3E-45		0.23	[-0.26--0.19] % decrease	Affymetrix [NR] (imputed)	N
1760	chr5	154027484	154027485	rs556412194	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	5q33.2		rs556412194-G	0.140487	6E-18		0.02775497	[0.021-0.034] unit increase	Affymetrix [93095623] (imputed)	N
1760	chr5	154027493	154027494	rs11352142	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	5q33.2		rs11352142-G	NR	2E-12		0.0193	[0.014-0.025] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
1760	chr5	154027748	154027749	rs4958754	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q33.2	NR	rs4958754-T	0.647559	1E-16				Affymetrix, Illumina [22063850] (imputed)	N
1760	chr5	154033833	154033834	rs138118674	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	5q33.2		rs138118674-T	0.162509	4E-20		0.0457741	[0.036-0.056] unit increase	Illumina [13476266] (imputed)	N
1760	chr5	154033833	154033834	rs138118674	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	5q33.2		rs138118674-T	NR	1E-43		0.0436	[0.038-0.05] unit increase	Affymetrix, Illumina [20536605] (imputed)	N
1760	chr5	154033833	154033834	rs138118674	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	5q33.2		rs138118674-T	NR	5E-118		0.0727	[0.067-0.079] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
1760	chr5	154033833	154033834	rs138118674	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	5q33.2		rs138118674-T	0.162605	9E-35		0.0619652	[0.052-0.072] unit increase	Illumina [13476299] (imputed)	N
1760	chr5	154033833	154033834	rs138118674	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	5q33.2		rs138118674-T	0.095693	8E-50		0.0638791	[0.057-0.071] unit increase	Affymetrix [93095623] (imputed)	N
1760	chr5	154033833	154033834	rs138118674	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	5q33.2		rs138118674-T	0.0956939999999999	4E-86		0.07851349	[0.071-0.086] unit increase	Affymetrix [93095623] (imputed)	N
1760	chr5	154034175	154034176	rs35788208	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	5q33.2	NR	rs35788208-T	0.095598	3E-88		0.07723255	[0.07-0.085] unit increase	Affymetrix [93095623] (imputed)	N
1760	chr5	154034175	154034176	rs35788208	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	5q33.2	NR	rs35788208-T	0.095604	9E-73		0.070011206	[0.062-0.078] unit increase	Affymetrix [93095623] (imputed)	N
1760	chr5	154034175	154034176	rs35788208	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	5q33.2		rs35788208-T	0.0955859999999999	1E-74		0.0694066	[0.062-0.077] unit increase	Affymetrix [93095623] (imputed)	N
1760	chr5	154034175	154034176	rs35788208	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin	108,054 Japanese ancestry individuals	NA	5q33.2	MIR3141, MIR1303	rs35788208-?	NR	2E-23		0.05801	[0.047-0.069] unit increase novel	Illumina [6108953] (imputed)	N
1760	chr5	154034175	154034176	rs35788208	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	5q33.2	intergenic	rs35788208-T	0.0949	1E-35		0.07701474	[0.065-0.089] unit increase	Affymetrix [~ 2500000] (imputed)	N
1760	chr5	154034175	154034176	rs35788208	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	5q33.2	intergenic	rs35788208-T	0.0949	5E-31		0.07145775	[0.059-0.084] unit increase	Affymetrix [~ 2500000] (imputed)	N
1760	chr5	154034178	154034179	rs12652072	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	5q33.2		rs12652072-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1760	chr5	154035236	154035237	rs35998524	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	5q33.2		rs35998524-T	0.095538	3E-26		0.0686407	[0.062-0.076] unit increase	Affymetrix [93095623] (imputed)	N
1760	chr5	154035236	154035237	rs35998524	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	5q33.2		rs35998524-T	0.095616	5E-18		0.033085182	[0.026-0.041] unit increase	Affymetrix [93095623] (imputed)	N
1760	chr5	154035236	154035237	rs35998524	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	5q33.2		rs35998524-T	0.0956010000000001	2E-75		0.070912115	[0.063-0.078] unit increase	Affymetrix [93095623] (imputed)	N
1760	chr5	154035236	154035237	rs35998524	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q33.2	NR	rs35998524-T	0.106513	5E-114				Affymetrix, Illumina [24246363] (imputed)	N
1760	chr5	154035236	154035237	rs35998524	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	5q33.2	NR	rs35998524-T	0.095449	5E-103		0.066968	[0.061-0.073] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
1760	chr5	154035236	154035237	rs35998524	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q33.2	NR	rs35998524-T	0.10861	6E-77				Affymetrix, Illumina [21126107] (imputed)	N
1760	chr5	154035236	154035237	rs35998524	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	5q33.2	NR	rs35998524-T	0.095832	4E-68		0.059596	[0.053-0.066] SD unit increase	Affymetrix, Illumina [50282193] (imputed)	N
1760	chr5	154035236	154035237	rs35998524	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q33.2	NR	rs35998524-T	0.108263	1E-174				Affymetrix, Illumina [20825802] (imputed)	N
1760	chr5	154035236	154035237	rs35998524	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	5q33.2	NR	rs35998524-T	0.095897	4E-152		0.086386	[0.08-0.093] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
1760	chr5	154035236	154035237	rs35998524	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	5q33.2		rs35998524-?	NR	3E-137				NR [~ 8900000] (imputed)	N
1760	chr5	154035236	154035237	rs35998524	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	5q33.2	intergenic	rs35998524-T	0.096	2E-29		0.06802429	[0.056-0.08] unit increase	Affymetrix [~ 2500000] (imputed)	N
1760	chr5	154035236	154035237	rs35998524	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	5q33.2	intergenic	rs35998524-T	0.096	1E-43		0.08383663	[0.072-0.096] unit increase	Affymetrix [~ 2500000] (imputed)	N
1760	chr5	154035385	154035386	rs5872391	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	5q33.2		rs5872391-G	0.32872	7E-16		0.019076152	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1760	chr5	154035385	154035386	rs5872391	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	5q33.2		rs5872391-G	0.328766	3E-12		0.01742755	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1760	chr5	154035385	154035386	rs5872391	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	5q33.2		rs5872391-G	0.328744	2E-9		0.0417773	[0.037-0.046] unit increase	Affymetrix [93095623] (imputed)	N
1760	chr5	154035385	154035386	rs5872391	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	5q33.2	intergenic	rs5872391-G	0.3276	1E-11		0.02595659	[0.018-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1760	chr5	154035385	154035386	rs5872391	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	5q33.2	intergenic	rs5872391-G	0.3275	1E-27		0.0413137	[0.034-0.049] unit increase	Affymetrix [~ 2500000] (imputed)	N
1760	chr5	154035385	154035386	rs5872391	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	5q33.2	intergenic	rs5872391-G	0.3276	7E-41		0.05085245	[0.043-0.058] unit increase	Affymetrix [~ 2500000] (imputed)	N
1760	chr5	154045279	154045280	rs7444282	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	5q33.2	MIR1303	rs7444282-G	0.797425	3E-17		0.0193249	[0.015-0.024] unit increase	NR [13737936] (imputed)	N
1760	chr5	154045279	154045280	rs7444282	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	5q33.2		rs7444282-?	NR	2E-15		0.0194307	[0.014-0.024] unit increase	Affymetrix [20259828] (imputed)	N
1760	chr5	154047254	154047255	rs113868593	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	5q33.2		rs113868593-?	NR	3E-16				NR [~ 8900000] (imputed)	N
1760	chr5	154048204	154048205	rs71590149	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	119,629 East Asian ancestry individuals	NA	5q33.2	NR	rs71590149-G	0.831235	1E-27		0.060194	[0.049-0.071] SD units decrease	Affymetrix, Illumina [16286228] (imputed)	N
1760	chr5	154048366	154048367	rs6877043	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	5q33.2	MIR1303	rs6877043-T	0.6368	2E-10		0.0085	[0.0058-0.0112] unit increase	Affymetrix, Illumina [33811881] (imputed)	N
1760	chr5	154048684	154048685	rs13186646	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	121,047 East Asian ancestry individuals	NA	5q33.2	NR	rs13186646-C	0.831434	2E-16		0.045007	[0.034-0.056] SD units decrease	Affymetrix, Illumina [16286195] (imputed)	N
1760	chr5	154050913	154050914	rs11167699	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	135,482 East Asian ancestry individuals	NA	5q33.2		rs11167699-T	0.165423	1E-16		0.0402793	[0.031-0.05] unit increase	Illumina [13477028] (imputed)	N
1760	chr5	154050913	154050914	rs11167699	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	126,151 East Asian ancestry individuals	NA	5q33.2	NR	rs11167699-C	0.833383	6E-13		0.038489	[0.028-0.049] SD units decrease	Affymetrix, Illumina [16289083] (imputed)	N
1760	chr5	154050913	154050914	rs11167699	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin concentration	108,728 Japanese ancestry individuals	NA	5q33.2	MIR3141, MIR1303	rs11167699-?	NR	2E-13		0.04185	[0.031-0.053] unit increase novel	Illumina [6108953] (imputed)	N
1760	chr5	154056079	154056080	rs114403726	25987507	Minica CC	2015-05-19	Behav Genet	Heritability, SNP- and Gene-Based Analyses of Cannabis Use Initiation and Age at Onset.	Cannabis use (age at onset)	5,148 European ancestry users	NA	5q33.2	NR	rs114403726-A		6E-6		0.44	[0.26-0.62] unit increase	NR [5896100] (imputed)	N
1760	chr5	154068401	154068402	rs72797568	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	5q33.2		rs72797568-?	NR	2E-12				NR [~ 8900000] (imputed)	N
1760	chr5	154077173	154077174	rs6580110	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 9, facial height related to vertical position of nasion)	2,187 European ancestry individuals	NA	5q33.2	NR	rs6580110-G	0.3164	4E-6		0.1528	[0.088-0.217] unit decrease	Illumina [10677593] (imputed)	N
1760	chr5	154116555	154116556	rs117247290	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	5q33.2	LARP1	rs117247290-A	0.035897	3E-20		0.055471603	[0.044-0.067] unit increase	Affymetrix [93095623] (imputed)	N
1761	chr5	154143754	154143755	rs56226335	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	5q33.2	LARP1	rs56226335-C	0.552319	5E-14		0.0217931	[0.018-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1761	chr5	154145125	154145126	rs7727176	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	5q33.2	LARP1	rs7727176-A	0.016353	3E-19		0.07827077	[0.061-0.095] unit increase	Affymetrix [93095623] (imputed)	N
1761	chr5	154182235	154182236	rs3853757	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	5q33.2	LARP1	rs3853757-C	0.462131	1E-14		0.017625758	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1761	chr5	154182235	154182236	rs3853757	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	5q33.2	LARP1	rs3853757-C	0.462146	6E-11		0.01489152	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
1761	chr5	154182235	154182236	rs3853757	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	5q33.2	LARP1	rs3853757-C	0.462157	5E-12		0.015654633	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1761	chr5	154228926	154228927	rs76964760	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	5q33.2	NR	rs76964760-?	NR	6E-6		0.0075548	[0.0043-0.0108] unit increase	Affymetrix [805426] (imputed)	N
1761	chr5	154257867	154257868	rs2688194	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Age at menopause	approximately 143,000 European ancestry individuals	NA	5q33.2		rs2688194-?	NR	9E-9				NR [~ 8900000] (imputed)	N
1761	chr5	154259961	154259962	rs56340489	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	5q33.2	CNOT8	rs56340489-T	0.0219200000000001	1E-9		0.046410672	[0.032-0.061] unit decrease	Affymetrix [93095623] (imputed)	N
1762	chr5	154278150	154278151	rs115551140	32232851	Deguchi H	2020-03-30	Br J Haematol	Novel exomic rare variants associated with venous thrombosis.	Venous thromboembolism	104 European ancestry cases, 211 European ancestry controls	NA	5q33.2	GEMIN5	rs115551140-?	0.01	9E-6				Illumina [308166]	N
1762	chr5	154287928	154287929	rs188533234	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	5q33.2		rs188533234-?	NR	2E-14				NR [~ 8900000] (imputed)	N
1762	chr5	154346258	154346259	rs14922	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	5q33.2	MRPL22	rs14922-G	0.121695	1E-21		0.0348688	[0.029-0.041] unit decrease	Affymetrix [93095623] (imputed)	N
1762	chr5	154353011	154353012	rs13165424	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	5q33.2		rs13165424-G	NR	3E-23		0.02	[0.016-0.024] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
1762	chr5	154353011	154353012	rs13165424	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	5q33.2	MRPL22	rs13165424-G	0.251324	3E-12		0.01886297	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1762	chr5	154353011	154353012	rs13165424	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	5q33.2	MRPL22	rs13165424-G	0.251337	1E-11		0.032893	[0.028-0.038] unit increase	Affymetrix [93095623] (imputed)	N
1762	chr5	154353011	154353012	rs13165424	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	5q33.2	MRPL22	rs13165424-G	0.251397	5E-38		0.035017695	[0.03-0.04] unit increase	Affymetrix [93095623] (imputed)	N
1762	chr5	154353011	154353012	rs13165424	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	5q33.2		rs13165424-?	NR	4E-24				NR [~ 8900000] (imputed)	N
1762	chr5	154353011	154353012	rs13165424	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	5q33.2	MRPL22	rs13165424-G	0.252	1E-28		0.04552891	[0.038-0.054] unit increase	Affymetrix [~ 2500000] (imputed)	N
1762	chr5	154355694	154355695	rs6890610	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q33.2	NR	rs6890610-T	0.359056	2E-29				Affymetrix, Illumina [24332387] (imputed)	N
1762	chr5	154355694	154355695	rs6890610	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular volume	108,256 Japanese ancestry individuals	NA	5q33.2	NR	rs6890610-?	NR	3E-10		0.03225	[0.022-0.042] unit decrease novel	Illumina [6108953] (imputed)	N
1762	chr5	154355694	154355695	rs6890610	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin	108,054 Japanese ancestry individuals	NA	5q33.2	NR	rs6890610-?	NR	1E-13		0.03776	[0.028-0.048] unit decrease novel	Illumina [6108953] (imputed)	N
1762	chr5	154355694	154355695	rs6890610	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	5q33.2	NR	rs6890610-T	0.2557	6E-6	(EA)	0.0327	[0.019-0.047] unit decrease	Illumina [~ 11800000] (imputed)	N
1762	chr5	154368403	154368404	rs17116670	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	5q33.2	NR	rs17116670-?	NR	3E-9				Affymetrix [NR]	N
1762	chr5	154369986	154369987	rs13162291	34957435	Bonfiglio F	2021-12-08	Cell Genom	GWAS of stool frequency provides insights into gastrointestinal motility and irritable bowel syndrome.	Stool frequency	167,875 European ancestry individuals	NA	5q33.2		rs13162291-A	0.191	3E-8		0.02	[0.012-0.028] unit increase	Affymetrix, Illumina [8817117] (imputed)	N
1762	chr5	154390880	154390881	rs574480779	32077919	Antikainen AAV	2020-02-20	Cardiovasc Res	Genome-wide association study on coronary artery disease in type 1 diabetes suggests beta-defensin 127 as a risk locus.	Coronary artery disease in type 1 diabetes	941 European ancestry cases, 3,928 European ancestry controls	434 cases, 3,123 controls	5q33.2	KIF4B	rs574480779-T	0.03	9E-7		2.27	[1.64-3.15]	Illumina [8744746] (imputed)	N
1762	chr5	154395457	154395458	rs17116710	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	5q33.2		rs17116710-?	NR	5E-25				NR [~ 8900000] (imputed)	N
1763	chr5	154426705	154426706	rs79666294	29325163	Hong J	2018-01-09	J Clin Endocrinol Metab	Trans-ethnic Evaluation Identifies Novel Low Frequency Loci Associated with 25-Hydroxyvitamin D Concentrations.	Serum 25-Hydroxyvitamin D levels	8,541 African American individuals, 3,485 Hispanic American individuals, 16,124 European ancestry individuals	NA	5q33.2	KIF4B	rs79666294-C	0.99	3E-8	(AA)	5.6	(z-score) increase	Affymetrix, Illumina [at least 398246] (imputed)	N
1763	chr5	154437260	154437261	rs460626	26039976	Wei Z	2015-06-17	Sci Rep	Genome-Wide Association Studies of HIV-1 Host Control in Ethnically Diverse Chinese Populations.	HIV-1 viral setpoint	326 Han Chinese ancestry cases, 58 Dai Chinese ancestry cases, 40 Jingpo Chinese ancestry cases, 83 Uygur Chinese ancestry cases, 11 Hui Chinese ancestry cases, 20 East Asian cases	NA	5q33.2	KIF4B, SGCD	rs460626-G	0.07718	8E-6	(Yun)	0.7899	unit increase	Illumina [up to 528294]	N
1763	chr5	154505579	154505580	rs7702812	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	5q33.2		rs7702812-?	NR	2E-12				NR [~ 8900000] (imputed)	N
1763	chr5	154514187	154514188	rs181974282	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 4, facial height related to vertical position of gnathion)	2,187 European ancestry individuals	NA	5q33.2	NR	rs181974282-G	0.009629	2E-6		0.7107	[0.42-1] unit increase	Illumina [10677593] (imputed)	N
1763	chr5	154514210	154514211	rs115794601	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-to-hip ratio adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,049 whole genome sequenced individuals, 29,518 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,001 Mylopotamos (founder/genetic isolate) individuals, 867 Pomak (founder/genetic isolate) individuals	206,045 European ancestry individuals	5q33.2	CTD-2311A18.1	rs115794601-C	0.9898	8E-6		0.2568	[0.14-0.37] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1764	chr5	154613833	154613834	rs79248818	33567813	Mateos MK	2021-02-11	Haematologica	Methotrexate-related central neurotoxicity: clinical characteristics, risk factors and genome-wide association study in children treated for acute lymphoblastic leukemia.	Methotrexate-related central neurotoxicity in children treated for acute lymphoblastic leukemia	48 European ancestry cases, 537 European ancestry controls	NA	5q33.2		rs79248818-C	NR	2E-6		16.85	[5.73-49.6]	Illumina [10838245] (imputed)	N
1765	chr5	154780953	154780954	rs139648861	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Parahippocampal gyrus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	5q33.2	NR	rs139648861-?		8E-6				Illumina [4322238] (imputed)	N
1766	chr5	154839645	154839646	rs1385108	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	5q33.2		rs1385108-C	0.763	5E-14		0.01	[0.008-0.012] unit decrease	NR [NR] (imputed)	N
1766	chr5	154839645	154839646	rs1385108	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking initiation	842,717 European ancestry individuals	NA	5q33.2	KIF4B, SGCD	rs1385108-T		2E-9		1.025	[NR]	Affymetrix [up to 79000000] (imputed)	N
1766	chr5	154839645	154839646	rs1385108	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	5q33.2	NR	rs1385108-T	0.239	2E-14		0.00971515	[0.0072-0.0122] unit increase	NR [9732723] (imputed)	N
1766	chr5	154839645	154839646	rs1385108	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	5q33.2	NR	rs1385108-T	0.239	4E-10		0.018704468	[0.013-0.025] unit increase	NR [~ 10000000] (imputed)	N
1766	chr5	154840566	154840567	rs12654437	28078323	Raj T	2016-12-21	Neurol Genet	Genetic architecture of age-related cognitive decline in African Americans.	Cognitive decline (age-related)	3,964 African American ancestry individuals.	NA	5q33.2	TTLL2, GRAMD1A	rs12654437-?		4E-6		0.004	unit increase	Illumina [13900000] (imputed)	N
1766	chr5	154857773	154857774	rs1295236	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	5q33.2	NR	rs1295236-T	0.285	2E-10		0.0102424	[0.0071-0.0134] unit decrease	NR [9732723] (imputed)	N
1766	chr5	154882213	154882214	rs55652507	29608535	Kuehn MH	2018-03-30	J Neuroophthalmol	Genetic Survey of Adult-Onset Idiopathic Intracranial Hypertension.	Idiopathic intracranial hypertension	63 European ancestry cases, 21 African American cases, 4 Native American cases, 1 Asian cases, 6 cases, 61 European ancestry controls, 21 African American controls, 3 Native American controls, 1 Asian controls, 9 controls	NA	5q33.2	Intergenic	rs55652507-?		3E-7				Illumina [301908]	N
1766	chr5	154900638	154900639	rs1298310	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	5q33.2	intergenic	rs1298310-G	0.686291	3E-13		0.0162837	[0.012-0.021] unit increase	NR [16516521] (imputed)	N
1767	chr5	154996353	154996354	rs4958830	31324189	Kim W	2019-07-19	Respir Res	DSP variants may be associated with longitudinal change in quantitative emphysema.	Emphysema annual change measurement in smokers (percent low attenuation area)	4,427 European ancestry individuals, 1,158 African American individuals	NA	5q33.2	SGCD	rs4958830-A	0.025	4E-6	(EA)	0.311	[0.18-0.44] unit increase	Illumina [NR] (imputed)	N
1767	chr5	154996727	154996728	rs67000912	29860282	Scelsi MA	2018-05-30	Brain	Genetic study of multimodal imaging Alzheimer's disease progression score implicates novel loci.	Cortical amyloid beta load	936 European ancestry individuals	NA	5q33.2	NR	rs67000912-?		6E-7	(corrected for APOE4 status)	0.14	[NR] unit decrease	Illumina [5137218] (imputed)	N
1768	chr5	155074864	155074865	rs1579282	30718454	Arnau-Soler A	2019-02-04	Transl Psychiatry	Genome-wide by environment interaction studies of depressive symptoms and psychosocial stress in UK Biobank and Generation Scotland.	Depressive symptoms x independent stressful life events interaction (2df test)	4,919 European ancestry individuals	NA	5q33.2	NR	rs1579282-A	0.3308	2E-7		0.04726137	NR unit decrease	Illumina [560351]	N
1768	chr5	155087159	155087160	rs716651	30718454	Arnau-Soler A	2019-02-04	Transl Psychiatry	Genome-wide by environment interaction studies of depressive symptoms and psychosocial stress in UK Biobank and Generation Scotland.	Depressive symptoms x independent stressful life events interaction (1df test)	4,919 European ancestry individuals	NA	5q33.2	NR	rs716651-A	0.4005	9E-6		0.0465724	NR unit decrease	Illumina [560351]	N
1768	chr5	155101797	155101797	rs79036472	32579418	Maukonen M	2020-06-24	J Biol Rhythms	Genetic Associations of Chronotype in the Finnish General Population.	Evening vs. morning chronotype (sMEQ score)	2,364 Finnish ancestry evening individuals, 5,072 Finnish ancestry morning individuals	NA	5q33.2	intergenic	rs79036472-?	NR	3E-7		1.4286346	[1.25-1.64]	Illumina [5842835] (imputed)	N
1768	chr5	155101797	155101797	rs79036472	32579418	Maukonen M	2020-06-24	J Biol Rhythms	Genetic Associations of Chronotype in the Finnish General Population.	Chronotype (sMEQ score)	7,436 Finnish ancestry individuals	NA	5q33.2	intergenic	rs79036472-T	NR	7E-6		0.551993	[0.31-0.79] unit increase	Illumina [5842835] (imputed)	N
1769	chr5	155202527	155202528	rs11134474	22006218	Yoon D	2011-10-18	Hum Genet	Large-scale genome-wide association study of Asian population reveals genetic factors in FRMD4A and other loci influencing smoking initiation and nicotine dependence.	Smoking behavior	8,842 Korean ancestry individuals	1,366 African American individuals, 671 European ancestry individuals	5q33.2	intergenic	rs11134474-?	NR	8E-6				Affymetrix [352228]	N
1769	chr5	155290210	155290211	rs9314082	32579418	Maukonen M	2020-06-24	J Biol Rhythms	Genetic Associations of Chronotype in the Finnish General Population.	Evening vs. morning chronotype (sMEQ score)	2,364 Finnish ancestry evening individuals, 5,072 Finnish ancestry morning individuals	NA	5q33.2	SGCD	rs9314082-?	NR	2E-6		1.3954787	[1.21-1.6]	Illumina [5842835] (imputed)	N
1769	chr5	155302581	155302582	rs1432723	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	5q33.2	SGCD	rs1432723-G	0.447	9E-6	(Amylin )	0.03	[NR] pM increase	Illumina [899892]	N
1769	chr5	155315049	155315050	rs79576243	31073882	Plotnikov D	2019-05-09	Hum Genet	A commonly occurring genetic variant within the NPLOC4-TSPAN10-PDE6G gene cluster is associated with the risk of strabismus.	Strabismus	1,345 British ancestry cases, 65,349 British ancestry controls	116 cases, 5,084 controls	5q33.2	NR	rs79576243-C	0.19	2E-6	(EA)	1.26	[1.15-1.38]	Affymetrix [7469170] (imputed)	N
1770	chr5	155345220	155345221	rs2163746	30738427	Penney ME	2019-02-09	BMC Cancer	A genome-wide association study identifies single nucleotide polymorphisms associated with time-to-metastasis in colorectal cancer.	Metastasis in stage I-III microsatellite instability low/stable colorectal cancer (time to event)	379 European ancestry cases	NA	5q33.2	NR	rs2163746-C	NR	5E-8	(Dominant, Mixture cure model)	6.45	[3.29-12.63]	Illumina [810622]	N
1770	chr5	155361115	155361116	rs17053011	30738427	Penney ME	2019-02-09	BMC Cancer	A genome-wide association study identifies single nucleotide polymorphisms associated with time-to-metastasis in colorectal cancer.	Metastasis in stage I-III microsatellite instability low/stable colorectal cancer (time to event)	379 European ancestry cases	NA	5q33.2	NR	rs17053011-T	NR	5E-8	(Dominant, Mixture cure model)	6.45	[3.29-12.64]	Illumina [810622]	N
1770	chr5	155394229	155394230	rs17053082	30070759	Olsson M	2018-08-02	J Thromb Haemost	Genome-wide analysis of genetic determinants of circulating factor VII activating protease (FSAP) activity.	Plasma factor VII activating protease levels	3,126 Swedish ancestry individuals	NA	5q33.2	Intergenic	rs17053082-?		2E-6		64.3	[37.84-90.76] unit decrease	Illumina [~ 10000000] (imputed)	N
1770	chr5	155394229	155394230	rs17053082	23300278	Saxena R	2013-01-08	Diabetes	Genome-wide association study identifies a novel locus contributing to type 2 diabetes susceptibility in Sikhs of Punjabi origin from India.	Type 2 diabetes	842 Punjabi Sikh ancestry cases, 774 Punjabi Sikh ancestry controls	up to 2,512 Punjabi Sikh ancestry cases and 3,201 Punjabi Sikh ancestry controls, up to 16,128 South Asian ancestry cases and 23,846 South Asian ancestry controls, up to 16,746 East Asian ancestry cases and 16,961 East Asian ancestry controls, up to 8,130 European ancestry cases and 38,987 European ancestry controls	5q33.2	intergenic	rs17053082-T	0.1	4E-7	(Punjabi Sikhs)	1.49	[1.28 - 1.73]	Illumina [1232008] (imputed)	N
1770	chr5	155394229	155394230	rs17053082	23300278	Saxena R	2013-01-08	Diabetes	Genome-wide association study identifies a novel locus contributing to type 2 diabetes susceptibility in Sikhs of Punjabi origin from India.	Type 2 diabetes	842 Punjabi Sikh ancestry cases, 774 Punjabi Sikh ancestry controls	up to 2,512 Punjabi Sikh ancestry cases and 3,201 Punjabi Sikh ancestry controls, up to 16,128 South Asian ancestry cases and 23,846 South Asian ancestry controls, up to 16,746 East Asian ancestry cases and 16,961 East Asian ancestry controls, up to 8,130 European ancestry cases and 38,987 European ancestry controls	5q33.2	intergenic	rs17053082-T	0.1	4E-7	(All Punjabi)	1.49	[1.28 - 1.73]	Illumina [1232008] (imputed)	N
1770	chr5	155405404	155405405	rs958444	31021400	Masotti M	2019-04-25	Biometrics	Pleiotropy informed adaptive association test of multiple traits using GWAS summary data.	Glycemic traits (pleiotropy)	46,186 European ancestry individuals	NA	5q33.2	SGCD	rs958444-?	NR	5E-8				NR [NR]	N
1770	chr5	155443789	155443790	rs13187689	29703947	Jawinski P	2018-04-27	Mol Psychiatry	Human brain arousal in the resting state: a genome-wide association study.	Resting-state electroencephalogram vigilance	1,877 European ancestry individuals	NA	5q33.2	SGCD	rs13187689-C	0.964	8E-6	(Stability score)	1.5796	[0.89-2.27] unit decrease	Affymetrix [8042262] (imputed)	N
1771	chr5	155500991	155500992	rs4704970	19010793	Baranzini SE	2008-11-14	Hum Mol Genet	Genome-wide association analysis of susceptibility and clinical phenotype in multiple sclerosis.	Multiple sclerosis (age of onset)	978 European ancestry cases, 883 European ancestry controls	NA	5q33.2	SGCD	rs4704970-?	0.20	7E-6			[NR]	Illumina [551642]	N
1771	chr5	155504516	155504517	rs73813229	33578652	Adjei AA	2021-02-10	Cancers (Basel)	Genetic Variations and Health-Related Quality of Life (HRQOL): A Genome-Wide Study Approach.	Mental health related quality of life	1,386 European ancestry individuals, 56 individuals	NA	5q33.2	SGCD	rs73813229-C	0.185	3E-7		5.1	[3.16-7.04] unit decrease	Illumina [7254516] (imputed)	N
1771	chr5	155572726	155572727	rs17053245	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip and palate	121 Asian ancestry cases, 159 European ancestry cases, 285 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	5q33.2	NR	rs17053245-?	NR	9E-6		2.49	[2.21-2.82]	Illumina [539000] (imputed)	N
1772	chr5	155650089	155650090	rs115864641	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	5q33.2	SGCD	rs115864641-A	0.0155203778630774	3E-6	(G_Coprococcus_HB)	1.23432	[0.71-1.75] unit decrease	Illumina [7711310] (imputed)	N
1772	chr5	155655406	155655407	rs142432846	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Daytime sleep phenotypes	874 European ancestry individuals	NA	5q33.2	SGCD	rs142432846-T	NR	1E-6	(daytime resting duration, weekdays)	0.3418	[0.2-0.48] unit increase	Affymetrix [7141204] (imputed)	N
1773	chr5	155735461	155735462	rs146645262	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		SGCD	rs146645262-?	NR	3E-9	(female)	1.1148	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1773	chr5	155753913	155753914	rs7717393	25710614	Hong X	2015-02-24	Nat Commun	Genome-wide association study identifies peanut allergy-specific loci and evidence of epigenetic mediation in US children.	Egg allergy	217 European ancestry child cases, 144 European ancestry non-allergic non-sensitized normal child controls, 688 European ancestry uncertain phenotype child controls, 1,148 European ancestry uncertain phenotype adult controls	NA	5q33.3	SGCD	rs7717393-?	NR	1E-6				Illumina [6459842] (imputed)	N
1773	chr5	155756298	155756299	rs11744154	27018472	Leslie EJ	2016-04-07	Am J Hum Genet	A Genome-wide Association Study of Nonsyndromic Cleft Palate Identifies an Etiologic Missense Variant in GRHL3.	Cleft palate	114 European ancestry case-parent trios, 30 Hispanic case-parent trios, 39 East Asian case-parent trios, 1 South East Asian ancestry case-parent trio, 5 Sub-Saharan African case-parent trios	NA	5q33.3	NR	rs11744154-A	NR	5E-6		2.14	[1.53-2.98]	Illumina [34985077] (imputed)	N
1773	chr5	155762627	155762628	rs4705007	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure	35,269 European ancestry cases, 63,451 European ancestry controls	NA	5q33.3	NR	rs4705007-G	0.341426	2E-8		1.0799136	[1.05-1.11]	Affymetrix [7791636] (imputed)	N
1773	chr5	155775074	155775075	rs12652777	33169155	Bigdeli TB	2020-11-10	Schizophr Bull	Genome-Wide Association Studies of Schizophrenia and Bipolar Disorder in a Diverse Cohort of US Veterans.	Schizophrenia	44,794 European ancestry cases, 7,509 African American cases, 1,234 Latino cases, 112,777 European ancestry controls, 8,337 African American controls, 3,090 Latino controls	NA	5q33.3	SGCD	rs12652777-T	NR	3E-8		1.05	[1.03-1.07]	Affymetrix [up to 49134253] (imputed)	N
1773	chr5	155775074	155775075	rs12652777	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	5q33.3	NR	rs12652777-T	NR	9E-6		1.05	[NR]	Illumina [7158791] (imputed)	N
1773	chr5	155781556	155781557	rs17555185	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (CGI-S score)	1,390 European ancestry cases	NA	5q33.3		rs17555185-G	NR	4E-6	(GLM)	0.6987	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
1773	chr5	155799465	155799466	rs7732608	27018472	Leslie EJ	2016-04-07	Am J Hum Genet	A Genome-wide Association Study of Nonsyndromic Cleft Palate Identifies an Etiologic Missense Variant in GRHL3.	Cleft palate	38 European ancestry cases, 835 European ancestry controls, 21 Hispanic cases, 626 Hispanic controls, 2 Asian ancestry cases, 161 Asian ancestry controls, 38 Indian ancestry controls, 15 Sub-Saharan African ancestry cases, 2 African American cases, 68 Sub-Saharan African ancestry controls, 5 African American controls, 1 African control, 4 controls, 114 European ancestry case-parent trios, 30 Hispanic case-parent trios, 39 East Asian case-parent trios, 1 South East Asian ancestry case-parent trio, 5 Sub-Saharan African case-parent trios	246 European ancestry cases, 1,685 European ancestry controls	5q33.3		rs7732608-G	NR	4E-6		1.75	[1.38-2.22]	Illumina [34985077] (imputed)	N
1773	chr5	155799465	155799466	rs7732608	27018472	Leslie EJ	2016-04-07	Am J Hum Genet	A Genome-wide Association Study of Nonsyndromic Cleft Palate Identifies an Etiologic Missense Variant in GRHL3.	Cleft palate	114 European ancestry case-parent trios, 30 Hispanic case-parent trios, 39 East Asian case-parent trios, 1 South East Asian ancestry case-parent trio, 5 Sub-Saharan African case-parent trios	NA	5q33.3	NR	rs7732608-G	NR	7E-6	(EA)	2.692	[1.716-4.223]	Illumina [34985077] (imputed)	N
1773	chr5	155807255	155807256	rs2312064	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	5q33.3	NR	rs2312064-C	0.447477	4E-8		0.0111847	[0.0072-0.0151] unit increase	Affymetrix [16583148] (imputed)	N
1773	chr5	155824773	155824774	rs4454042	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	5q33.3	NA	rs4454042-T	0.2734	1E-10		0.0127	[0.0088-0.0166] unit increase	NR [~ 27400000] (imputed)	N
1774	chr5	155850438	155850439	rs7448162	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	5q33.3		rs7448162-T	NR	5E-9		0.0144	[0.0095-0.0193] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
1774	chr5	155852314	155852315	rs4705014	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking cessation (MTAG)	up to 820,192 European ancestry individuals	NA	5q33.3	NR	rs4705014-A	0.64	3E-9		0.0095009	[0.0064-0.0126] unit decrease	NR [9732723] (imputed)	N
1774	chr5	155861625	155861626	rs10056066	26503814	Hardin M	2016-10-27	Pharmacogenomics J	A genome-wide analysis of the response to inhaled ?2-agonists in chronic obstructive pulmonary disease.	Response to bronchodilator in chronic obstructive pulmonary disease (change in FEV1)	5,766 European ancestry cases, 811 African American cases	NA	5q33.3	SGCD	rs10056066-A	0.07	5E-8	(BDRBASE, AA)	7.12	[4.59-9.65] unit increase	Illumina [NR] (imputed)	N
1774	chr5	155867427	155867428	rs4705016	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Superior temporal sulcus banks volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	5q33.3	SGCD	rs4705016-?		3E-6				Illumina [4322238] (imputed)	N
1774	chr5	155893566	155893567	rs62382696	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (positive Marder score)	1,390 European ancestry cases	NA	5q33.3		rs62382696-A	NR	7E-7	(GLM)	2.514	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
1774	chr5	155893566	155893567	rs62382696	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (PANSS score)	1,390 European ancestry individuals	NA	5q33.3		rs62382696-A	NR	1E-6	(GLM)	7.5388	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
1774	chr5	155902002	155902003	rs55872084	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol consumption (drinks per week) (MTAG)	972,915 European ancestry individuals	NA	5q33.3	NR	rs55872084-T	0.218	4E-8		0.012075497	[0.0078-0.0164] unit increase	Affymetrix [NR] (imputed)	N
1774	chr5	155902002	155902003	rs55872084	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	5q33.3	NR	rs55872084-T	0.235	9E-9		0.00895569	[0.0059-0.012] unit increase	NR [~ 9732723] (imputed)	N
1774	chr5	155902002	155902003	rs55872084	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week)	up to 941,280 European ancestry individuals	NA	5q33.3	NR	rs55872084-T	0.235	6E-9		0.009978744	[0.0066-0.0133] unit increase	NR [~ 10000000] (imputed)	N
1774	chr5	155929259	155929260	rs186386113	32460577	Song L	2020-05-28	Arterioscler Thromb Vasc Biol	Association of TIM-1 (T-Cell Immunoglobulin and Mucin Domain 1) With Incidence of Stroke.	T-Cell Immunoglobulin and Mucin domain 1 levels	4,505 European ancestry individuals	NA	5q33.3	SGCD	rs186386113-A		7E-10		0.484	[0.33-0.64] unit decrease	Illumina [7328171] (imputed)	N
1774	chr5	155941335	155941336	rs256837	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	5q33.3	SGCD	rs256837-A	0.1941	2E-9		0.148	[0.099-0.197] mmHg decrease	Affymetrix [NR] (imputed)	N
1774	chr5	155960453	155960454	rs72801137	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	5q33.3	NR	rs72801137-C	NR	3E-10		0.0458	[0.031-0.06] unit increase	Affymetrix [9000000] (imputed)	N
1775	chr5	155980417	155980418	rs111751755	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (CGI-S score)	1,390 European ancestry cases	NA	5q33.3		rs111751755-C	NR	3E-6	(GLM)	0.7606	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
1775	chr5	156005165	156005166	rs138538719	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (positive Marder score)	1,390 European ancestry cases	NA	5q33.3		rs138538719-C	NR	3E-7	(GLM)	2.5963	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
1775	chr5	156005165	156005166	rs138538719	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (positive Marder score)	1,390 European ancestry cases	NA	5q33.3		rs138538719-?	NR	7E-9	(MLM)	0.5380868	[0.36-0.72] unit increase	Illumina [~ 9000000] (imputed)	N
1775	chr5	156005165	156005166	rs138538719	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (Multivariate)	1,390 European ancestry individuals	NA	5q33.3		rs138538719-?	NR	5E-8	(MLM)			Illumina [~ 9000000] (imputed)	N
1775	chr5	156013830	156013831	rs7710178	25514360	Hansel NN	2014-12-16	Am J Respir Cell Mol Biol	Genome-Wide Association Study Identification of Novel Loci Associated with Airway Responsiveness in Chronic Obstructive Pulmonary Disease.	Airway responsiveness in chronic obstructive pulmonary disease	Up to 4,108 European American cases	NA	5q33.3	SGCD	rs7710178-T	0.162	2E-6	(Categorical PC20)	0.129	[NR] unit decrease	Illumina [546355]	N
1775	chr5	156013830	156013831	rs7710178	25514360	Hansel NN	2014-12-16	Am J Respir Cell Mol Biol	Genome-Wide Association Study Identification of Novel Loci Associated with Airway Responsiveness in Chronic Obstructive Pulmonary Disease.	Airway responsiveness in chronic obstructive pulmonary disease	Up to 4,108 European American cases	NA	5q33.3	SGCD	rs7710178-?	0.838	6E-6	(Dichotomous PC20)	1.25	[NR]	Illumina [546355]	N
1775	chr5	156025505	156025506	rs280471	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	5q33.3		rs280471-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1775	chr5	156045808	156045809	rs114645617	32460577	Song L	2020-05-28	Arterioscler Thromb Vasc Biol	Association of TIM-1 (T-Cell Immunoglobulin and Mucin Domain 1) With Incidence of Stroke.	T-Cell Immunoglobulin and Mucin domain 1 levels	4,505 European ancestry individuals	NA	5q33.3	SGCD	rs114645617-A		3E-9		0.273	[0.18-0.36] unit increase	Illumina [7328171] (imputed)	N
1775	chr5	156046245	156046246	rs62380867	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (PANSS score)	1,390 European ancestry individuals	NA	5q33.3		rs62380867-A	NR	6E-7	(GLM)	7.9915	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
1775	chr5	156046245	156046246	rs62380867	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (PANSS score)	1,390 European ancestry individuals	NA	5q33.3		rs62380867-?	NR	1E-8	(MLM)	0.5614234	[0.37-0.75] unit increase	Illumina [~ 9000000] (imputed)	N
1775	chr5	156058486	156058487	rs2312659	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	5q33.3		rs2312659-T	NR	4E-9		0.0143	[0.0096-0.019] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
1776	chr5	156139568	156139569	rs157350	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	5q33.3		rs157350-A	0.8718	3E-8		0.18155675	[0.12-0.25] mmHg increase	Affymetrix, Illumina [242865] (imputed)	N
1776	chr5	156139568	156139569	rs157350	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	5q33.3		rs157350-A	0.8718	7E-14		0.17475025	[0.13-0.22] mmHg increase	Affymetrix, Illumina [242866] (imputed)	N
1776	chr5	156139568	156139569	rs157350	19260139	Polasek O	2009-02-01	Croat Med J	Genome-wide association study of anthropometric traits in Korcula Island, Croatia.	Anthropometric traits	898 Korculan (founder/genetic isolate) individuals	NA	5q33.3	SGCD	rs157350-?	0.11	6E-6	(hip circumference)	0.31	[0.18-0.44] mm decrease	Illumina [316730]	N
1776	chr5	156139568	156139569	rs157350	19260139	Polasek O	2009-02-01	Croat Med J	Genome-wide association study of anthropometric traits in Korcula Island, Croatia.	Anthropometric traits	898 Korculan (founder/genetic isolate) individuals	NA	5q33.3	SGCD	rs157350-?	0.11	4E-6	(brachial circumference)	0.31	[0.18-0.44] mm decrease	Illumina [316730]	N
1776	chr5	156145653	156145654	rs157678	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	NA	5q33.3	CTC-340I23.2	rs157678-T	0.33130000000000004	7E-11		0.1457	[0.1-0.19] unit increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1776	chr5	156152919	156152920	rs2642660	25514360	Hansel NN	2014-12-16	Am J Respir Cell Mol Biol	Genome-Wide Association Study Identification of Novel Loci Associated with Airway Responsiveness in Chronic Obstructive Pulmonary Disease.	Airway responsiveness in chronic obstructive pulmonary disease	Up to 4,108 European American cases	NA	5q33.3	SGCD	rs2642660-C	0.187	3E-6	(Continuous PC20)	0.05	[NR] unit decrease	Illumina [546355]	N
1776	chr5	156182047	156182048	rs11135380	24023788	Ong BA	2013-09-02	PLoS One	Gene network analysis in a pediatric cohort identifies novel lung function genes.	Lung function (forced expiratory flow during mid-portion (25% and 75%) of forced vital capacity)	1,015 European ancestry individuals, 541 African American individuals	NA	5q33.3	NR	rs11135380-?		9E-6	(AA)			Illumina [up to 524000]	N
1776	chr5	156230975	156230976	rs2434708	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	5q33.3	NR	rs2434708-?	NR	1E-9	(TIM)	0.29787	[0.2-0.39] unit decrease	Illumina [11901634] (imputed)	N
1777	chr5	156350807	156350808	rs116707723	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	5q33.3		rs116707723-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1778	chr5	156376702	156376703	rs6873053	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	5q33.3	NR	rs6873053-G	NR	5E-18		0.0383	[0.03-0.047] unit increase	Affymetrix [9000000] (imputed)	N
1778	chr5	156376702	156376703	rs6873053	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	5q33.3	NR	rs6873053-G	NR	3E-14		0.0336	[0.025-0.042] unit increase	Affymetrix [9000000] (imputed)	N
1778	chr5	156376702	156376703	rs6873053	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	5q33.3	NR	rs6873053-G	NR	6E-12		0.0305	[0.022-0.039] unit increase	Affymetrix [9000000] (imputed)	N
1778	chr5	156380066	156380067	rs4704727	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Triglyceride levels	28,183 East Asian ancestry individuals, 177,861 European ancestry individuals	10,857 Chinese ancestry individuals	5q33.3	TIMD4	rs4704727-T	0.313	3E-16	(Trans-ethnic initial)	0.0289	[0.022-0.036] unit decrease (EA Beta values)	Affymetrix, Illumina [up to 1900000] (imputed)	N
1778	chr5	156382307	156382308	rs4704825	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	5q33.3		rs4704825-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1778	chr5	156383421	156383422	rs1363232	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	5q33.3		rs1363232-A	0.340475	2E-10		0.0269535	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156383421	156383422	rs1363232	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in IDL	115,082 European ancestry individuals	NA	5q33.3		rs1363232-A	0.340475	6E-15		0.0340978	[0.026-0.043] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156383421	156383422	rs1363232	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	5q33.3		rs1363232-A	0.340475	9E-9		0.0242984	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
1778	chr5	156383421	156383422	rs1363232	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	5q33.3		rs1363232-G	NR	2E-11		0.0157	[0.011-0.02] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
1778	chr5	156383421	156383422	rs1363232	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	5q33.3		rs1363232-G	NR	3E-17		0.0196	[0.015-0.024] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
1778	chr5	156383421	156383422	rs1363232	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	5q33.3	NR	rs1363232-G	0.659614	2E-10		0.012861	[0.0089-0.0168] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1778	chr5	156383421	156383422	rs1363232	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	5q33.3	TIMD4	rs1363232-G	0.6598	4E-9		0.02266806	[0.015-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1778	chr5	156390296	156390297	rs6882076	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	5q33.3		rs6882076-C	NR	2E-57		0.035	[0.031-0.039] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
1778	chr5	156390296	156390297	rs6882076	33893285	Guindo-Martinez M	2021-04-23	Nat Commun	The impact of non-additive genetic associations on age-related complex diseases.	Dyslipidemia	30,244 European ancestry cases, 26,393 European ancestry controls	NA	5q33.3		rs6882076-C	0.371	6E-12		1.1		Affymetrix [15679186] (imputed)	N
1778	chr5	156390296	156390297	rs6882076	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	5q33.3	TIMD4	rs6882076-T	0.365713	2E-57		0.0329854	[0.029-0.037] unit decrease	Affymetrix [NR] (imputed)	N
1778	chr5	156390296	156390297	rs6882076	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	5q33.3	TIMD4, HAVCR1	rs6882076-?	NR	1E-38		0.0353	[0.031-0.04] unit decrease	Affymetrix [5701386] (imputed)	N
1778	chr5	156390296	156390297	rs6882076	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	5q33.3	HAVCR1	rs6882076-?	NR	2E-69		0.0467	[0.042-0.051] unit decrease	Affymetrix [5701386] (imputed)	N
1778	chr5	156390296	156390297	rs6882076	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	5q33.3	NR	rs6882076-?	NR	6E-6		0.01968817	[0.011-0.028] unit increase	Illumina [31978265] (imputed)	N
1778	chr5	156390296	156390297	rs6882076	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	5q33.3	NR	rs6882076-?	NR	2E-10		2.410257	[1.67-3.15] unit increase	Illumina [32003504] (imputed)	N
1778	chr5	156390296	156390297	rs6882076	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	5q33.3	NR	rs6882076-?	NR	5E-8		1.860601	[1.19-2.53] unit increase	Illumina [31808917] (imputed)	N
1778	chr5	156390296	156390297	rs6882076	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	Triglyceride levels	up to 23,508 African ancestry individuals, 4,649 Asian ancestry individuals, up to 77,047 European ancestry individuals, 6,705 Hispanic individuals	NA	5q33.3		rs6882076-T	0.3695	4E-6	(EA)	0.013	[0.0075-0.0185] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1778	chr5	156390296	156390297	rs6882076	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	LDL cholesterol levels	up to 23,353 African ancestry individuals, 13,171 Asian ancestry individuals, up to 82,522 European ancestry individuals, 6,646 Hispanic individuals	NA	5q33.3		rs6882076-T	0.3928	7E-13		1.1846	[0.86-1.51] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1778	chr5	156390296	156390297	rs6882076	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	5q33.3	NR	rs6882076-T	NR	2E-23		0.039	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1778	chr5	156390296	156390297	rs6882076	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	5q33.3	NR	rs6882076-T	0.367	4E-22	(EA)	0.042	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1778	chr5	156390296	156390297	rs6882076	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	5q33.3	NR	rs6882076-T	NR	1E-29		0.049	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1778	chr5	156390296	156390297	rs6882076	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	5q33.3	NR	rs6882076-T	0.367	2E-26	(EA)	0.051	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1778	chr5	156390296	156390297	rs6882076	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	5q33.3	NR	rs6882076-T	NR	4E-21		0.042	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1778	chr5	156390296	156390297	rs6882076	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	5q33.3	NR	rs6882076-T	0.367	4E-19	(EA)	0.044	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1778	chr5	156390296	156390297	rs6882076	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Low density lipoprotein cholesterol levels	72,866 Japanese ancestry individuals	NA	5q33.3	TIMD4	rs6882076-?	NR	1E-8		0.04276	[0.028-0.057] unit increase novel	Illumina [6108953] (imputed)	N
1778	chr5	156390296	156390297	rs6882076	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Total cholesterol levels	32,576 East Asian ancestry individuals, 187,365 European ancestry individuals	10,855 Chinese ancestry individuals	5q33.3	TIMD4	rs6882076-T	0.334	2E-43	(Trans-ethnic initial)	0.0508	[0.044-0.058] unit decrease (EA Beta values)	Affymetrix, Illumina [up to 1900000] (imputed)	N
1778	chr5	156390296	156390297	rs6882076	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	LDL cholesterol levels	32,285 East Asian ancestry individuals, 173,082 European ancestry individuals	8,478 Chinese ancestry individuals	5q33.3	TIMD4	rs6882076-T	0.334	1E-33	(Trans-ethnic initial)	0.0456	[0.038-0.053] unit decrease (EA Beta value)	Affymetrix, Illumina [~ 1900000] (imputed)	N
1778	chr5	156390296	156390297	rs6882076	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Triglycerides	94,595 European ancestry individuals	93,982 European ancestry individuals	5q33.3	TIMD4	rs6882076-T	0.36	2E-15		0.029	[NR] mg/dL decrease	NR [NR] (imputed)	N
1778	chr5	156390296	156390297	rs6882076	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	5q33.3	TIMD4	rs6882076-T	0.36	3E-31		0.046	[NR] unit decrease	NR [NR] (imputed)	N
1778	chr5	156390296	156390297	rs6882076	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	5q33.3	TIMD4	rs6882076-T	0.36	5E-41		0.051	[NR] unit decrease	NR [NR] (imputed)	N
1778	chr5	156390296	156390297	rs6882076	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	Triglycerides	96,598 European ancestry individuals	NA	5q33.3	TIMD4, HAVCR1	rs6882076-G	0.36	4E-12		2.63	[1.87-3.39] mg/dL decrease	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1778	chr5	156390296	156390297	rs6882076	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	LDL cholesterol	95,454 European ancestry individuals	NA	5q33.3	TIMD4, HAVCR1	rs6882076-T	0.35	2E-22		1.67	[1.3-2.04] mg/dL decrease	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1778	chr5	156390296	156390297	rs6882076	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	Cholesterol, total	100,184 European ancestry individuals	NA	5q33.3	TIMD4, HAVCR1	rs6882076-T	0.35	7E-28		1.98	[1.59-2.37] mg/dL decrease	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1778	chr5	156391627	156391628	rs6874202	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Triglyceride levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	5q33.3	TIMD4, HAVCR1	rs6874202-?		6E-14		0.0343	[0.025-0.043] unit increase	Illumina [31500000] (imputed)	N
1778	chr5	156391627	156391628	rs6874202	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Total cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	5q33.3	TIMD4, HAVCR1	rs6874202-?		3E-23		0.0437	[0.035-0.052] unit increase	Illumina [31500000] (imputed)	N
1778	chr5	156391627	156391628	rs6874202	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	5q33.3	TIMD4	rs6874202-T	0.365729	1E-50		0.0323831	[0.028-0.037] unit decrease	Affymetrix [NR] (imputed)	N
1778	chr5	156391627	156391628	rs6874202	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	5q33.3	TIMD4	rs6874202-T	0.365773	1E-47		0.0312735	[0.027-0.036] unit decrease	Affymetrix [NR] (imputed)	N
1778	chr5	156391627	156391628	rs6874202	30670697	Kilpelainen TO	2019-01-22	Nat Commun	Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity.	LDL cholesterol x physical activity interaction (2df test)	7,260 African American inactive individuals, 12,761 African American active individuals, 2,740 Asian ancestry inactive individuals, 3,615 Asian ancestry active individuals, 22,378 European ancestry inactive individuals, 55,310 European ancestry active individuals, 2,163 Hispanic or Latin American inactive individuals, 3,461 Hispanic or Latin American active individuals	571 African American inactive individuals, 1,521 African American active individuals, 1,217 South African Black ancestry inactive individuals, 389 South African Black ancestry active individuals, 2,495 East Asian ancestry inactive individuals, 1,947 East Asian ancestry active individuals,  724 South Asian ancestry inactive individuals, 1,425 South Asian ancestry active individuals,  33,796 European ancestry inactive individuals, 50,812 European ancestry active individuals, 2,578 Hispanic inactive individuals, 8,661 Hispanic active individuals	5q33.3	NR	rs6874202-T	0.3857	4E-28				Affymetrix, Illumina [at least 2500000] (imputed)	N
1778	chr5	156392081	156392082	rs4704826	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	5q33.3		rs4704826-A	NR	1E-19		0.0191	[0.015-0.023] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1778	chr5	156392081	156392082	rs4704826	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	5q33.3	TIMD4	rs4704826-A	0.6347	2E-16		0.019222165	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1778	chr5	156392081	156392082	rs4704826	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	5q33.3	TIMD4	rs4704826-A	0.634661	5E-19		0.02080823	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1778	chr5	156392247	156392248	rs12517431	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	5q33.3	intergenic	rs12517431-T	0.6045	8E-42		0.0365	[0.031-0.042] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1778	chr5	156394440	156394441	rs9715911	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	5q33.3	intergenic	rs9715911-A	0.6039	5E-38		0.035	[0.03-0.04] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1778	chr5	156394517	156394518	rs11745603	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Total cholesterol levels	128,305 Japanese ancestry individuals	NA	5q33.3	TIMD4, HAVCR1	rs11745603-?	NR	3E-16		0.04524	[0.034-0.056] unit increase novel	Illumina [6108953] (imputed)	N
1778	chr5	156396002	156396003	rs12657266	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	5q33.3		rs12657266-T	NR	7E-74		0.039	[0.035-0.043] unit increase	Affymetrix, Illumina [20536134] (imputed)	N
1778	chr5	156396002	156396003	rs12657266	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	5q33.3		rs12657266-T	NR	1E-51		0.0345	[0.03-0.039] unit increase	Affymetrix, Illumina [20521447] (imputed)	N
1778	chr5	156396002	156396003	rs12657266	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Low density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	5q33.3	TIMD4, HAVCR1	rs12657266-?		1E-13		0.0371	[0.027-0.047] unit decrease	Illumina [31500000] (imputed)	N
1778	chr5	156397672	156397673	rs6882345	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total phospholipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	5q33.3		rs6882345-G	0.367164	1E-18		0.0357962	[0.028-0.044] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156397672	156397673	rs6882345	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large LDL	115,082 European ancestry individuals	NA	5q33.3		rs6882345-G	0.367164	1E-15		0.0338245	[0.026-0.042] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156397672	156397673	rs6882345	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in LDL	115,082 European ancestry individuals	NA	5q33.3		rs6882345-G	0.367164	2E-17		0.0361369	[0.028-0.044] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156397672	156397673	rs6882345	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in IDL	115,082 European ancestry individuals	NA	5q33.3		rs6882345-G	0.367164	1E-12		0.0294918	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156397672	156397673	rs6882345	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total esterified cholesterol levels	115,082 European ancestry individuals	NA	5q33.3		rs6882345-G	0.367164	2E-15		0.0327937	[0.025-0.041] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156397672	156397673	rs6882345	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholines levels	115,006 European ancestry individuals	NA	5q33.3		rs6882345-G	0.36715	2E-12		0.028416	[0.021-0.036] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156397672	156397673	rs6882345	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol levels	115,082 European ancestry individuals	NA	5q33.3		rs6882345-G	0.367164	2E-17		0.0352729	[0.027-0.043] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156397672	156397673	rs6882345	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Sphingomyelin levels	115,006 European ancestry individuals	NA	5q33.3		rs6882345-G	0.36715	4E-8		0.0218801	[0.014-0.03] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156397672	156397673	rs6882345	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Polyunsaturated fatty acid levels	115,006 European ancestry individuals	NA	5q33.3		rs6882345-G	0.36715	5E-27		0.0447124	[0.037-0.053] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156397672	156397673	rs6882345	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium LDL	115,082 European ancestry individuals	NA	5q33.3		rs6882345-G	0.367164	1E-16		0.0355961	[0.027-0.044] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156397672	156397673	rs6882345	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large LDL	115,082 European ancestry individuals	NA	5q33.3		rs6882345-G	0.367164	6E-13		0.0306267	[0.022-0.039] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156397672	156397673	rs6882345	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in LDL	115,082 European ancestry individuals	NA	5q33.3		rs6882345-G	0.367164	1E-15		0.0341298	[0.026-0.042] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156397672	156397673	rs6882345	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in IDL	115,082 European ancestry individuals	NA	5q33.3		rs6882345-G	0.367164	6E-18		0.0355892	[0.028-0.044] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156397672	156397673	rs6882345	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphoglycerides levels	115,006 European ancestry individuals	NA	5q33.3		rs6882345-G	0.36715	2E-12		0.0283264	[0.02-0.036] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156397672	156397673	rs6882345	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphatidylcholine levels	115,006 European ancestry individuals	NA	5q33.3		rs6882345-G	0.36715	1E-11		0.027161	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156397672	156397673	rs6882345	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-6 fatty acid levels	115,006 European ancestry individuals	NA	5q33.3		rs6882345-G	0.36715	4E-26		0.0441725	[0.036-0.052] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156397672	156397673	rs6882345	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-3 fatty acid levels	115,006 European ancestry individuals	NA	5q33.3		rs6882345-G	0.36715	2E-11		0.0274277	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156397672	156397673	rs6882345	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Linoleic acid levels	115,006 European ancestry individuals	NA	5q33.3		rs6882345-G	0.36715	3E-25		0.0435446	[0.035-0.052] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156397672	156397673	rs6882345	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	LDL cholesterol levels	115,082 European ancestry individuals	NA	5q33.3		rs6882345-G	0.367164	3E-16		0.0347616	[0.026-0.043] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156397672	156397673	rs6882345	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small LDL	115,082 European ancestry individuals	NA	5q33.3		rs6882345-G	0.367164	1E-11		0.0289882	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156397672	156397673	rs6882345	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	5q33.3		rs6882345-G	0.367164	4E-11		0.0281589	[0.02-0.037] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156397672	156397673	rs6882345	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large LDL	115,082 European ancestry individuals	NA	5q33.3		rs6882345-G	0.367164	1E-9		0.0255975	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156397672	156397673	rs6882345	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in LDL	115,082 European ancestry individuals	NA	5q33.3		rs6882345-G	0.367164	2E-10		0.0268745	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156397672	156397673	rs6882345	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in IDL	115,082 European ancestry individuals	NA	5q33.3		rs6882345-G	0.367164	7E-10		0.0255569	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156397672	156397673	rs6882345	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of IDL particles	115,082 European ancestry individuals	NA	5q33.3		rs6882345-G	0.367164	2E-13		0.0312589	[0.023-0.04] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156397672	156397673	rs6882345	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Clinical LDL cholesterol levels	115,082 European ancestry individuals	NA	5q33.3		rs6882345-G	0.367164	1E-13		0.0316803	[0.023-0.04] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156397672	156397673	rs6882345	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium VLDL	115,082 European ancestry individuals	NA	5q33.3		rs6882345-G	0.367164	2E-21		0.0402264	[0.032-0.049] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156397672	156397673	rs6882345	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large LDL	115,082 European ancestry individuals	NA	5q33.3		rs6882345-G	0.367164	1E-16		0.0350653	[0.027-0.043] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156397672	156397673	rs6882345	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in IDL	115,082 European ancestry individuals	NA	5q33.3		rs6882345-G	0.367164	2E-8		0.0231094	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156397672	156397673	rs6882345	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large LDL	115,082 European ancestry individuals	NA	5q33.3		rs6882345-G	0.367164	1E-14		0.0327085	[0.024-0.041] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156397672	156397673	rs6882345	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in IDL	115,082 European ancestry individuals	NA	5q33.3		rs6882345-G	0.367164	7E-9		0.0239008	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156398168	156398169	rs1501908	35046404	Chou WC	2022-01-19	NPJ Genom Med	A common variant in 11q23.3 associated with hyperlipidemia is mediated by the binding and regulation of GATA4.	Hyperlipidemia	3,310 Taiwanese ancestry cases, 6,404 Taiwanese ancestry controls	829 Taiwanese ancestry cases, 1,833 Taiwanese ancestry controls	5q33.3		rs1501908-?	NR	2E-8		0.84	[0.79-0.89]	Affymetrix [597758]	N
1778	chr5	156398168	156398169	rs1501908	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls, 33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	5q33.3		rs1501908-C	NR	7E-17		0.0438	[0.034-0.054] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1778	chr5	156398168	156398169	rs1501908	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	72,866 East Asian ancestry individuals	NA	5q33.3		rs1501908-C	0.828885	3E-9		0.0378346	[0.025-0.05] unit increase	Illumina [13461863] (imputed)	N
1778	chr5	156398168	156398169	rs1501908	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	5q33.3		rs1501908-C	0.634997	7E-21		0.021908896	[0.017-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1778	chr5	156398168	156398169	rs1501908	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q33.3	NR	rs1501908-C	0.65726	5E-12				Affymetrix, Illumina [23472807] (imputed)	N
1778	chr5	156398168	156398169	rs1501908	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	5q33.3	NR	rs1501908-?	NR	9E-6		0.01931599	[0.011-0.028] unit increase	Illumina [31978265] (imputed)	N
1778	chr5	156398168	156398169	rs1501908	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	5q33.3	NR	rs1501908-?	NR	3E-10		2.387686	[1.64-3.13] unit increase	Illumina [32003504] (imputed)	N
1778	chr5	156398168	156398169	rs1501908	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	5q33.3	NR	rs1501908-?	NR	7E-8		1.835887	[1.17-2.5] unit increase	Illumina [31808917] (imputed)	N
1778	chr5	156398168	156398169	rs1501908	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls	NA	5q33.3	TIMD4	rs1501908-G	0.364761	2E-12		0.040749673	[0.029-0.052] unit decrease	Affymetrix [7288503] (imputed)	N
1778	chr5	156398168	156398169	rs1501908	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	5q33.3	NR	rs1501908-G	NR	1E-23		0.04	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1778	chr5	156398168	156398169	rs1501908	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	5q33.3	NR	rs1501908-G	0.366	3E-22	(EA)	0.042	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1778	chr5	156398168	156398169	rs1501908	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	5q33.3	NR	rs1501908-G	NR	2E-29		0.049	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1778	chr5	156398168	156398169	rs1501908	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	5q33.3	NR	rs1501908-G	0.366	3E-26	(EA)	0.051	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1778	chr5	156398168	156398169	rs1501908	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	5q33.3	NR	rs1501908-G	NR	5E-21		0.042	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1778	chr5	156398168	156398169	rs1501908	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	5q33.3	NR	rs1501908-G	0.366	6E-19	(EA)	0.044	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1778	chr5	156398168	156398169	rs1501908	19060906	Kathiresan S	2008-12-07	Nat Genet	Common variants at 30 loci contribute to polygenic dyslipidemia.	LDL cholesterol	19,840 European ancestry individuals	Up to 20,623 European ancestry individuals	5q33.3	TIMD4, HAVCR1	rs1501908-G	0.37	1E-11		0.07	[0.03-0.11] s.d. decrease	Affymetrix, Illumina [~ 2600000] (imputed)	N
1778	chr5	156399038	156399039	rs58198139	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	5q33.3	intergenic	rs58198139-T	0.5818	3E-22		0.0261	[0.021-0.031] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1778	chr5	156399949	156399950	rs11134475	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	5q33.3	NR	rs11134475-G	0.635707	4E-23		0.01882	[0.015-0.023] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1778	chr5	156399949	156399950	rs11134475	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	5q33.3	NR	rs11134475-G	0.635835	4E-13		0.014216	[0.01-0.018] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1778	chr5	156400807	156400808	rs55776147	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	111,667 East Asian ancestry individuals	NA	5q33.3		rs55776147-G	0.828453	2E-8		0.0299602	[0.02-0.04] unit increase	Illumina [13471903] (imputed)	N
1778	chr5	156400807	156400808	rs55776147	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	135,808 East Asian ancestry individuals	NA	5q33.3		rs55776147-G	0.828003	2E-18		0.0413091	[0.032-0.051] unit increase	Illumina [13476599] (imputed)	N
1778	chr5	156400807	156400808	rs55776147	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q33.3	NR	rs55776147-G	0.669248	3E-25				Affymetrix, Illumina [24588908] (imputed)	N
1778	chr5	156400807	156400808	rs55776147	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x long total sleep time interaction (2df test)	2,913 African American long sleepers, 358 Chinese ancestry long sleepers, 110 Asian ancestry long sleepers, 7,583 European ancestry long sleepers, 1,036 Hispanic/Latino long sleepers, up to 11,862 African American controls, 1,432 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,744 European ancestry controls, 4,066 Hispanic/Latino controls	at least 214 African American long sleepers, 616 East Asian ancestry long sleepers, up to 6,657 European ancestry long sleepers, 2,457 Hispanic long sleepers, at least 913 African American controls, 2,517 East Asian ancestry controls, up to 26,868 European ancestry controls, 9,870 Hispanic controls	5q33.3	TIMD4	rs55776147-?	NR	1E-16		1.369	[1.03-1.71] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
1778	chr5	156428792	156428793	rs12652795	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in IDL	115,082 European ancestry individuals	NA	5q33.3		rs12652795-A	0.541546	8E-10		0.0261243	[0.018-0.034] unit increase	NR [11722792] (imputed)	N
1778	chr5	156439694	156439697	rs142744034	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	5q33.3		rs142744034-A	0.603794	3E-9		0.0137478	[0.0093-0.0182] unit decrease	Affymetrix [93095623] (imputed)	N
1778	chr5	156440965	156440966	rs7736399	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	5q33.3		rs7736399-T	NR	2E-13		0.0231	[0.017-0.029] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1778	chr5	156440965	156440966	rs7736399	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	5q33.3		rs7736399-T	NR	8E-11		0.0204	[0.014-0.026] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
1778	chr5	156442656	156442657	rs1948759	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	5q33.3	HAVCR1	rs1948759-A	0.1724	2E-8		0.0097	[0.0064-0.013] unit decrease	Affymetrix, Illumina [33811881] (imputed)	N
1778	chr5	156442656	156442657	rs1948759	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x short total sleep time interaction (2df test)	2,974 African American short sleepers, 365 Chinese ancestry short sleepers, 110 Asian ancestry short sleepers, at least 8,230 European ancestry short sleepers, 1,079 Hispanic/Latino short sleepers, 11,801 African American controls, 1,425 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,097 European ancestry controls, 4,023 Hispanic/Latino controls	at least 214 African American short sleepers, 629 East Asian ancestry short sleepers, up to 6,761 European ancestry short sleepers, 2,473 Hispanic short sleepers, at least 913 African American controls, 2,504 East Asian ancestry controls, up to 26,764 European ancestry controls, 9,854 Hispanic controls	5q33.3	TIMD4	rs1948759-?	NR	8E-10		1.068	[0.66-1.48] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
1778	chr5	156442783	156442784	rs1948760	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	5q33.3	NR	rs1948760-A	0.827905	9E-18		0.025104707	[0.019-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
1778	chr5	156442783	156442784	rs1948760	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	5q33.3		rs1948760-A	0.827936	3E-13		0.021372387	[0.016-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1778	chr5	156442783	156442784	rs1948760	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	5q33.3	NR	rs1948760-A	0.82884	3E-20		0.02211	[0.017-0.027] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1778	chr5	156442783	156442784	rs1948760	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q33.3	NR	rs1948760-A	0.846625	5E-15				Affymetrix, Illumina [23114412] (imputed)	N
1778	chr5	156442783	156442784	rs1948760	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	5q33.3	NR	rs1948760-A	0.828795	1E-17		0.021808	[0.017-0.027] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
1778	chr5	156442783	156442784	rs1948760	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	5q33.3		rs1948760-?	NR	2E-12				NR [~ 8900000] (imputed)	N
1778	chr5	156443065	156443066	rs4704834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	VLDL cholesterol levels	115,082 European ancestry individuals	NA	5q33.3		rs4704834-A	0.355972	1E-30		0.0494398	[0.041-0.058] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156443065	156443066	rs4704834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	5q33.3		rs4704834-A	0.355972	1E-9		0.0247775	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156443065	156443066	rs4704834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very small VLDL	115,082 European ancestry individuals	NA	5q33.3		rs4704834-A	0.355972	1E-24		0.0430067	[0.035-0.051] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156443065	156443066	rs4704834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large VLDL	115,082 European ancestry individuals	NA	5q33.3		rs4704834-A	0.355972	2E-15		0.0326797	[0.025-0.041] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156443065	156443066	rs4704834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large HDL	115,082 European ancestry individuals	NA	5q33.3		rs4704834-A	0.355972	3E-21		0.0397194	[0.031-0.048] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156443065	156443066	rs4704834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small VLDL	115,082 European ancestry individuals	NA	5q33.3		rs4704834-A	0.355972	3E-21		0.0393933	[0.031-0.048] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156443065	156443066	rs4704834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small LDL	115,082 European ancestry individuals	NA	5q33.3		rs4704834-A	0.355972	5E-27		0.0449722	[0.037-0.053] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156443065	156443066	rs4704834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small HDL	115,082 European ancestry individuals	NA	5q33.3		rs4704834-A	0.355972	6E-9		0.0242133	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156443065	156443066	rs4704834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium VLDL	115,082 European ancestry individuals	NA	5q33.3		rs4704834-A	0.355972	2E-21		0.0397048	[0.032-0.048] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156443065	156443066	rs4704834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium LDL	115,082 European ancestry individuals	NA	5q33.3		rs4704834-A	0.355972	2E-24		0.0428968	[0.035-0.051] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156443065	156443066	rs4704834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large VLDL	115,082 European ancestry individuals	NA	5q33.3		rs4704834-A	0.355972	2E-16		0.0341906	[0.026-0.042] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156443065	156443066	rs4704834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large LDL	115,082 European ancestry individuals	NA	5q33.3		rs4704834-A	0.355972	6E-22		0.0406144	[0.032-0.049] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156443065	156443066	rs4704834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	5q33.3		rs4704834-A	0.355972	9E-17		0.0345327	[0.026-0.043] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156443065	156443066	rs4704834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in VLDL	115,082 European ancestry individuals	NA	5q33.3		rs4704834-A	0.355972	1E-19		0.0376086	[0.03-0.046] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156443065	156443066	rs4704834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in LDL	115,082 European ancestry individuals	NA	5q33.3		rs4704834-A	0.355972	8E-24		0.0424213	[0.034-0.051] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156443065	156443066	rs4704834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in IDL	115,082 European ancestry individuals	NA	5q33.3		rs4704834-A	0.355972	1E-24		0.0431311	[0.035-0.051] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156443065	156443066	rs4704834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total triglycerides levels	115,082 European ancestry individuals	NA	5q33.3		rs4704834-A	0.355972	2E-20		0.0383849	[0.03-0.047] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156443065	156443066	rs4704834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very small VLDL	115,082 European ancestry individuals	NA	5q33.3		rs4704834-A	0.355972	1E-27		0.0459885	[0.038-0.054] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156443065	156443066	rs4704834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large VLDL	115,082 European ancestry individuals	NA	5q33.3		rs4704834-A	0.355972	1E-18		0.036477	[0.028-0.045] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156443065	156443066	rs4704834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small VLDL	115,082 European ancestry individuals	NA	5q33.3		rs4704834-A	0.355972	3E-30		0.0485023	[0.04-0.057] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156443065	156443066	rs4704834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small LDL	115,082 European ancestry individuals	NA	5q33.3		rs4704834-A	0.355972	1E-23		0.0432055	[0.035-0.052] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156443065	156443066	rs4704834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium VLDL	115,082 European ancestry individuals	NA	5q33.3		rs4704834-A	0.355972	1E-29		0.048384	[0.04-0.057] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156443065	156443066	rs4704834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium LDL	115,082 European ancestry individuals	NA	5q33.3		rs4704834-A	0.355972	3E-18		0.0375673	[0.029-0.046] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156443065	156443066	rs4704834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	5q33.3		rs4704834-A	0.355972	1E-24		0.0433611	[0.035-0.052] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156443065	156443066	rs4704834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large VLDL	115,082 European ancestry individuals	NA	5q33.3		rs4704834-A	0.355972	4E-20		0.0381645	[0.03-0.046] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156443065	156443066	rs4704834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	5q33.3		rs4704834-A	0.355972	5E-18		0.035845	[0.028-0.044] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156443065	156443066	rs4704834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in VLDL	115,082 European ancestry individuals	NA	5q33.3		rs4704834-A	0.355972	5E-27		0.0453856	[0.037-0.054] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156443065	156443066	rs4704834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total free cholesterol levels	115,082 European ancestry individuals	NA	5q33.3		rs4704834-A	0.355972	1E-22		0.0411283	[0.033-0.049] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156443065	156443066	rs4704834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total fatty acid levels	115,006 European ancestry individuals	NA	5q33.3		rs4704834-A	0.355957	9E-26		0.0446199	[0.036-0.053] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156443065	156443066	rs4704834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol minus HDL-C levels	115,082 European ancestry individuals	NA	5q33.3		rs4704834-A	0.355972	2E-19		0.0386439	[0.03-0.047] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156443065	156443066	rs4704834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Saturated fatty acid levels	115,006 European ancestry individuals	NA	5q33.3		rs4704834-A	0.355957	2E-18		0.0372358	[0.029-0.046] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156443065	156443066	rs4704834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Remnant cholesterol (non-HDL, non-LDL -cholesterol)	115,082 European ancestry individuals	NA	5q33.3		rs4704834-A	0.355972	5E-22		0.0412619	[0.033-0.05] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156443065	156443066	rs4704834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	5q33.3		rs4704834-A	0.355957	2E-13		0.0292979	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156443065	156443066	rs4704834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of monounsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	5q33.3		rs4704834-A	0.355957	7E-12		0.0282772	[0.02-0.036] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156443065	156443066	rs4704834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of apolipoprotein B to apolipoprotein A1 levels	115,082 European ancestry individuals	NA	5q33.3		rs4704834-A	0.355972	2E-18		0.0372625	[0.029-0.046] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156443065	156443066	rs4704834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	5q33.3		rs4704834-A	0.355983	4E-17		0.0362702	[0.028-0.045] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156443065	156443066	rs4704834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	5q33.3		rs4704834-A	0.355972	1E-14		0.0331868	[0.025-0.042] unit increase	NR [11722792] (imputed)	N
1778	chr5	156443065	156443066	rs4704834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	5q33.3		rs4704834-A	0.355972	3E-10		0.0262076	[0.018-0.034] unit increase	NR [11722792] (imputed)	N
1778	chr5	156443065	156443066	rs4704834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very small VLDL	115,082 European ancestry individuals	NA	5q33.3		rs4704834-A	0.355972	2E-30		0.0484885	[0.04-0.057] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156443065	156443066	rs4704834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large VLDL	115,082 European ancestry individuals	NA	5q33.3		rs4704834-A	0.355972	4E-21		0.0391746	[0.031-0.047] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156443065	156443066	rs4704834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small VLDL	115,082 European ancestry individuals	NA	5q33.3		rs4704834-A	0.355972	2E-31		0.0501071	[0.042-0.059] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156443065	156443066	rs4704834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small LDL	115,082 European ancestry individuals	NA	5q33.3		rs4704834-A	0.355972	7E-23		0.0422823	[0.034-0.051] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156443065	156443066	rs4704834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium VLDL	115,082 European ancestry individuals	NA	5q33.3		rs4704834-A	0.355972	9E-31		0.0495634	[0.041-0.058] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156443065	156443066	rs4704834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large VLDL	115,082 European ancestry individuals	NA	5q33.3		rs4704834-A	0.355972	8E-21		0.0388647	[0.031-0.047] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156443065	156443066	rs4704834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	5q33.3		rs4704834-A	0.355972	3E-17		0.0349396	[0.027-0.043] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156443065	156443066	rs4704834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in VLDL	115,082 European ancestry individuals	NA	5q33.3		rs4704834-A	0.355972	3E-30		0.0484666	[0.04-0.057] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156443065	156443066	rs4704834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Monounsaturated fatty acid levels	115,006 European ancestry individuals	NA	5q33.3		rs4704834-A	0.355957	1E-24		0.0435104	[0.035-0.052] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156443065	156443066	rs4704834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	5q33.3		rs4704834-A	0.355972	2E-10		0.0262823	[0.018-0.034] unit increase	NR [11722792] (imputed)	N
1778	chr5	156443065	156443066	rs4704834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	5q33.3		rs4704834-A	0.355972	1E-9		0.0248063	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156443065	156443066	rs4704834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	5q33.3		rs4704834-A	0.355972	9E-10		0.025185	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
1778	chr5	156443065	156443066	rs4704834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	5q33.3		rs4704834-A	0.355972	3E-8		0.0227333	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
1778	chr5	156443065	156443066	rs4704834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	5q33.3		rs4704834-A	0.355972	5E-26		0.0444457	[0.036-0.053] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156443065	156443066	rs4704834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	5q33.3		rs4704834-A	0.355972	4E-23		0.041279	[0.033-0.049] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156443065	156443066	rs4704834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	5q33.3		rs4704834-A	0.355972	2E-28		0.0475694	[0.039-0.056] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156443065	156443066	rs4704834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	5q33.3		rs4704834-A	0.355972	1E-29		0.0487454	[0.04-0.057] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156443065	156443066	rs4704834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	5q33.3		rs4704834-A	0.355972	1E-21		0.0397533	[0.032-0.048] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156443065	156443066	rs4704834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	5q33.3		rs4704834-A	0.355972	3E-19		0.0371819	[0.029-0.045] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156443065	156443066	rs4704834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in VLDL	115,082 European ancestry individuals	NA	5q33.3		rs4704834-A	0.355972	8E-31		0.0492678	[0.041-0.058] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156443065	156443066	rs4704834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very small VLDL particles	115,082 European ancestry individuals	NA	5q33.3		rs4704834-A	0.355972	4E-26		0.0447101	[0.036-0.053] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156443065	156443066	rs4704834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large VLDL particles	115,082 European ancestry individuals	NA	5q33.3		rs4704834-A	0.355972	2E-18		0.0362429	[0.028-0.044] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156443065	156443066	rs4704834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small VLDL particles	115,082 European ancestry individuals	NA	5q33.3		rs4704834-A	0.355972	4E-30		0.0483092	[0.04-0.057] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156443065	156443066	rs4704834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small LDL particles	115,082 European ancestry individuals	NA	5q33.3		rs4704834-A	0.355972	2E-25		0.0449679	[0.037-0.053] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156443065	156443066	rs4704834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium VLDL particles	115,082 European ancestry individuals	NA	5q33.3		rs4704834-A	0.355972	4E-30		0.0489456	[0.041-0.057] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156443065	156443066	rs4704834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium LDL particles	115,082 European ancestry individuals	NA	5q33.3		rs4704834-A	0.355972	8E-19		0.0382214	[0.03-0.047] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156443065	156443066	rs4704834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large VLDL particles	115,082 European ancestry individuals	NA	5q33.3		rs4704834-A	0.355972	1E-20		0.0386452	[0.031-0.047] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156443065	156443066	rs4704834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large LDL particles	115,082 European ancestry individuals	NA	5q33.3		rs4704834-A	0.355972	9E-29		0.0477761	[0.039-0.056] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156443065	156443066	rs4704834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of chylomicrons and extremely large VLDL particles	115,082 European ancestry individuals	NA	5q33.3		rs4704834-A	0.355972	9E-18		0.035536	[0.027-0.044] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156443065	156443066	rs4704834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of VLDL particles	115,082 European ancestry individuals	NA	5q33.3		rs4704834-A	0.355972	6E-31		0.0494062	[0.041-0.058] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156443065	156443066	rs4704834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of LDL particles	115,082 European ancestry individuals	NA	5q33.3		rs4704834-A	0.355972	1E-26		0.0459712	[0.038-0.054] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156443065	156443066	rs4704834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	5q33.3		rs4704834-A	0.355972	2E-10		0.0274482	[0.019-0.036] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156443065	156443066	rs4704834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	5q33.3		rs4704834-A	0.355972	1E-15		0.0344864	[0.026-0.043] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156443065	156443066	rs4704834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very small VLDL	115,082 European ancestry individuals	NA	5q33.3		rs4704834-A	0.355972	2E-16		0.0343033	[0.026-0.042] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156443065	156443066	rs4704834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large VLDL	115,082 European ancestry individuals	NA	5q33.3		rs4704834-A	0.355972	6E-25		0.043729	[0.035-0.052] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156443065	156443066	rs4704834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small VLDL	115,082 European ancestry individuals	NA	5q33.3		rs4704834-A	0.355972	7E-27		0.0461075	[0.038-0.055] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156443065	156443066	rs4704834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small LDL	115,082 European ancestry individuals	NA	5q33.3		rs4704834-A	0.355972	1E-23		0.0431426	[0.035-0.052] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156443065	156443066	rs4704834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium LDL	115,082 European ancestry individuals	NA	5q33.3		rs4704834-A	0.355972	4E-19		0.0385651	[0.03-0.047] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156443065	156443066	rs4704834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large VLDL	115,082 European ancestry individuals	NA	5q33.3		rs4704834-A	0.355972	1E-27		0.0462529	[0.038-0.055] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156443065	156443066	rs4704834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	5q33.3		rs4704834-A	0.355972	4E-20		0.0382105	[0.03-0.046] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156443065	156443066	rs4704834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in VLDL	115,082 European ancestry individuals	NA	5q33.3		rs4704834-A	0.355972	4E-29		0.0482273	[0.04-0.057] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156443065	156443066	rs4704834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in LDL	115,082 European ancestry individuals	NA	5q33.3		rs4704834-A	0.355972	2E-18		0.0376256	[0.029-0.046] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156443065	156443066	rs4704834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	5q33.3		rs4704834-A	0.355972	2E-19		0.0377009	[0.03-0.046] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156443065	156443066	rs4704834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	5q33.3		rs4704834-A	0.355972	1E-24		0.0430044	[0.035-0.051] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156443065	156443066	rs4704834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	5q33.3		rs4704834-A	0.355972	8E-28		0.0470236	[0.039-0.055] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156443065	156443066	rs4704834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small LDL	115,082 European ancestry individuals	NA	5q33.3		rs4704834-A	0.355972	8E-21		0.0403293	[0.032-0.049] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156443065	156443066	rs4704834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	5q33.3		rs4704834-A	0.355972	7E-26		0.0451998	[0.037-0.054] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156443065	156443066	rs4704834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	5q33.3		rs4704834-A	0.355972	3E-17		0.0363961	[0.028-0.045] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156443065	156443066	rs4704834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	5q33.3		rs4704834-A	0.355972	5E-25		0.0434261	[0.035-0.052] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156443065	156443066	rs4704834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	5q33.3		rs4704834-A	0.355972	4E-20		0.0381441	[0.03-0.046] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156443065	156443066	rs4704834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for VLDL particles	115,082 European ancestry individuals	NA	5q33.3		rs4704834-A	0.355972	7E-11		0.0261738	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156443065	156443066	rs4704834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein B levels	115,082 European ancestry individuals	NA	5q33.3		rs4704834-A	0.355972	2E-25		0.0449162	[0.036-0.053] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156443065	156443066	rs4704834	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	5q33.3		rs4704834-G	NR	1E-8		0.0107	[0.007-0.0144] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
1778	chr5	156443065	156443066	rs4704834	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	5q33.3		rs4704834-G	0.645206	1E-11		0.015928641	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1778	chr5	156443065	156443066	rs4704834	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	5q33.3		rs4704834-G	0.645181	1E-27		0.02552619	[0.021-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
1778	chr5	156443250	156443251	rs4704835	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q33.3	NR	rs4704835-A	0.846064	4E-18				Affymetrix, Illumina [24649327] (imputed)	N
1778	chr5	156445826	156445827	rs2862064	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	5q33.3	intergenic	rs2862064-G	0.8286	8E-10		0.02971332	[0.02-0.039] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1778	chr5	156455111	156455112	rs6866758	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to monounsaturated fatty acids	115,006 European ancestry individuals	NA	5q33.3		rs6866758-C	0.813303	4E-9		0.0301443	[0.02-0.04] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156463357	156463358	rs10462975	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HAVCR1	5,367 Icelandic ancestry individuals	NA	5q33.3		rs10462975-T	0.3914	5E-119		0.430811	[0.39-0.47] unit increase	Illumina [7506463] (imputed)	N
1778	chr5	156464241	156464242	rs2036402	23505323	Weissglas-Volkov D	2013-03-15	J Med Genet	Genomic study in Mexicans identifies a new locus for triglycerides and refines European lipid loci.	Hypertriglyceridemia	1,122 Mexican ancestry cases, 1,118 Mexican ancestry controls	1,067 Mexican ancestry cases, 1,054 Mexican ancestry controls	5q33.3	TIMD4, HAVCR1, HAVCR2	rs2036402-?	0.45	3E-6		1.23	[1.15-1.31]	Illumina [1361436] (imputed)	N
1778	chr5	156466777	156466778	rs6889164	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5q33.3	HAVCR1	rs6889164-C	0.29	3E-59	(Hepatitis A virus cellular receptor 1, HAVCR1.9021.1.3)	0.43	[0.37-0.49] unit decrease	Affymetrix [10572788] (imputed)	N
1778	chr5	156471068	156471069	rs6878069	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	5q33.3	HAVCR1	rs6878069-A	0.53703125	2E-60	(HAVCR1, 9021_1_3)	0.39867127	[0.35-0.45] unit increase	Illumina [> 1000000] (imputed)	N
1778	chr5	156472148	156472149	rs6555820	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Kidney injury molecule 1 levels	21,758 European ancestry individuals	9,173 individuals	5q33.3		rs6555820-A	0.47	4E-817		0.4781	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1778	chr5	156472148	156472149	rs6555820	32460577	Song L	2020-05-28	Arterioscler Thromb Vasc Biol	Association of TIM-1 (T-Cell Immunoglobulin and Mucin Domain 1) With Incidence of Stroke.	T-Cell Immunoglobulin and Mucin domain 1 levels	4,505 European ancestry individuals	NA	5q33.3	HAVCR1	rs6555820-A		8E-120		0.357	[0.33-0.39] unit decrease	Illumina [7328171] (imputed)	N
1778	chr5	156472148	156472149	rs6555820	28369058	Folkersen L	2017-04-03	PLoS Genet	Mapping of 79 loci for 83 plasma protein biomarkers in cardiovascular disease.	Blood protein levels in cardiovascular risk	3,394 European ancestry individuals	2,639 individuals	5q33.3	HAVCR1	rs6555820-C	0.52	2E-145		0.46	unit increase	Illumina [5270624] (imputed)	N
1778	chr5	156472824	156472825	rs17054136	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	5q33.3	HAVCR1	rs17054136-A	0.05118	1E-10		0.032309588	[0.022-0.042] unit decrease	Affymetrix [93095623] (imputed)	N
1778	chr5	156477631	156477632	rs953568	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	5q33.3	NR	rs953568-?	NR	8E-21	(TIM)	0.455632	[0.36-0.55] unit decrease	Illumina [11901634] (imputed)	N
1778	chr5	156477830	156477831	rs17573010	29593015	Montasser ME	2018-09-01	Circulation	An APOO Pseudogene on Chromosome 5q Is Associated With Low-Density Lipoprotein Cholesterol Levels.	Low density lipoprotein cholesterol levels	1,102 Old Order Amish (founder/genetic isolate) individuals	798 Old Order Amish (founder/genetic isolate) individuals	5q33.3	HAVCR1	rs17573010-G	NR	9E-10		13.1	mg/dL increase	Illumina [124907]	N
1778	chr5	156479322	156479323	rs1553318	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	5q33.3	NR	rs1553318-G	NR	7E-19		0.035	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1778	chr5	156479322	156479323	rs1553318	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	5q33.3	NR	rs1553318-G	0.369	4E-18	(EA)	0.037	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1778	chr5	156479322	156479323	rs1553318	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	5q33.3	NR	rs1553318-G	NR	8E-21		0.041	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1778	chr5	156479322	156479323	rs1553318	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	5q33.3	NR	rs1553318-G	0.369	7E-20	(EA)	0.044	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1778	chr5	156479322	156479323	rs1553318	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	5q33.3	NR	rs1553318-G	NR	3E-15		0.035	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1778	chr5	156479322	156479323	rs1553318	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	5q33.3	NR	rs1553318-G	0.369	9E-15	(EA)	0.038	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1778	chr5	156479322	156479323	rs1553318	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	Triglycerides	up to 62,166 European ancestry individuals	NA	5q33.3	TIMD4, HAVCR1	rs1553318-C	0.65	2E-11		0.042	[0.03-0.054] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
1778	chr5	156479322	156479323	rs1553318	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	LDL cholesterol	up 62,166 European ancestry individuals	NA	5q33.3	TIMD4, HAVCR1	rs1553318-C	0.65	2E-15		0.05	[0.038-0.062] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
1778	chr5	156479322	156479323	rs1553318	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	Cholesterol, total	up to 62,166 European ancestry individuals	NA	5q33.3	TIMD4, HAVCR1	rs1553318-C	0.65	2E-21		0.058	[0.046-0.07] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
1778	chr5	156480647	156480648	rs11134525	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	5q33.3		rs11134525-A	0.368776	2E-12		0.0293996	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
1778	chr5	156481012	156481013	rs11134526	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HAVCR1	5,367 Icelandic ancestry individuals	NA	5q33.3		rs11134526-A	0.2718	3E-88		0.407232	[0.37-0.45] unit decrease	Illumina [7506463] (imputed)	N
1778	chr5	156482295	156482296	rs56084311	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Kidney injury molecule 1 levels	21,758 European ancestry individuals	9,173 individuals	5q33.3		rs56084311-C	0.99	1E-191		1.2255	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1778	chr5	156482668	156482669	rs870581	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5q33.3	NR	rs870581-A	0.391	8E-35	(Hepatitis A virus cellular receptor 1, HAVCR1.9021.1.3)	0.31	[0.25-0.37] unit increase	Affymetrix [10572788] (imputed)	N
1778	chr5	156484217	156484218	rs10066168	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	5q33.3	HAVCR1	rs10066168-T	NR	3E-6				Affymetrix, Illumina [NR] (imputed)	N
1778	chr5	156484217	156484218	rs10066168	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	5q33.3	HAVCR1	rs10066168-T	NR	2E-6				Affymetrix, Illumina [NR] (imputed)	N
1778	chr5	156484217	156484218	rs10066168	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	5q33.3	HAVCR1	rs10066168-T	NR	5E-226				Affymetrix, Illumina [NR] (imputed)	N
1778	chr5	156484217	156484218	rs10066168	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	5q33.3	HAVCR1	rs10066168-T	NR	2E-193	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1778	chr5	156484217	156484218	rs10066168	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	5q33.3	HAVCR1	rs10066168-T	NR	7E-13				Affymetrix, Illumina [NR] (imputed)	N
1778	chr5	156484217	156484218	rs10066168	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	5q33.3	HAVCR1	rs10066168-T	NR	2E-11	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1778	chr5	156484479	156484480	rs67114357	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Kidney injury molecule 1 levels	21,758 European ancestry individuals	9,173 individuals	5q33.3		rs67114357-T	0.72	4E-82		0.1859	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1779	chr5	156506651	156506652	rs193098517	24159190	Seppala I	2013-10-24	Eur Heart J	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Asymmetrical dimethylarginine levels	5110 European ancestry individuals	NA	5q33.3	intergenic	rs193098517-A	0.008	8E-7		0.593	[0.36-0.83] unit decrease	Affymetrix, Illumina [10085758] (imputed)	N
1779	chr5	156512770	156512771	rs67467610	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris heterochromicity	329 South Asian ancestry individuals		5q33.3	intergenic	rs67467610-T	0.21	3E-6		0.472	[0.28-0.67] unit decrease	Illumina [640625] (imputed)	N
1779	chr5	156513343	156513344	rs4704846	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	5q33.3	HAVCR2, CTB-120L21.1	rs4704846-G	0.1905717	2E-39	(Hepatitis A virus cellular receptor 2)	0.6866	[0.59-0.78] unit increase	Affymetrix [509946]	N
1779	chr5	156519010	156519011	rs75109222	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	5q33.3	NR	rs75109222-C	NR	1E-13		0.0324	[0.024-0.041] unit decrease	Affymetrix [9000000] (imputed)	N
1779	chr5	156519010	156519011	rs75109222	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	5q33.3	NR	rs75109222-C	NR	7E-11		0.0286	[0.02-0.037] unit decrease	Affymetrix [9000000] (imputed)	N
1779	chr5	156519010	156519011	rs75109222	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	5q33.3	NR	rs75109222-C	NR	1E-10		0.0283	[0.02-0.037] unit decrease	Affymetrix [9000000] (imputed)	N
1779	chr5	156524671	156524672	rs190211816	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HAVCR2	5,362 Icelandic ancestry individuals	NA	5q33.3		rs190211816-A	0.01229	3E-58		1.28248	[1.13-1.44] unit decrease	Illumina [7506463] (imputed)	N
1779	chr5	156526330	156526331	rs6891966	34493870	Wightman DP	2021-09-07	Nat Genet	A genome-wide association study with 1,126,563 individuals identifies new risk loci for Alzheimer's disease.	Late-onset Alzheimer's disease	90,338 cases, 1,036,225 controls	NA	5q33.3		rs6891966-?	NR	8E-10				Illumina [NR] (imputed)	N
1779	chr5	156530148	156530149	rs6874178	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5q33.3	HAVCR2	rs6874178-T	0.817	1E-145	(Hepatitis A virus cellular receptor 2, HAVCR2.5134.52.2)	0.73	[0.67-0.79] unit decrease	Affymetrix [10572788] (imputed)	N
1779	chr5	156531253	156531254	rs919744	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HAVCR2	5,362 Icelandic ancestry individuals	NA	5q33.3		rs919744-G	0.1634	3E-176		0.636594	[0.59-0.68] unit increase	Illumina [7506463] (imputed)	N
1779	chr5	156533218	156533219	rs4704737	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	5q33.3	HAVCR2	rs4704737-G	0.83640625	7E-104	(HAVCR2, 5134_52_2)	0.6601954	[0.6-0.72] unit decrease	Illumina [> 1000000] (imputed)	N
1779	chr5	156541375	156541376	rs6896579	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	5q33.3	NR	rs6896579-T	NR	9E-15		0.0235	[0.018-0.029] unit increase	Affymetrix [9000000] (imputed)	N
1779	chr5	156541375	156541376	rs6896579	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	5q33.3	NR	rs6896579-T	NR	2E-14		0.0232	[0.017-0.029] unit increase	Affymetrix [9000000] (imputed)	N
1779	chr5	156541375	156541376	rs6896579	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	5q33.3	NR	rs6896579-T	NR	4E-11		0.0201	[0.014-0.026] unit increase	Affymetrix [9000000] (imputed)	N
1779	chr5	156541375	156541376	rs6896579	32492067	Ruffieux H	2020-06-03	PLoS Comput Biol	A fully joint Bayesian quantitative trait locus mapping of human protein abundance in plasma.	Protein quantitative trait loci	394 European ancestry individuals	548 European ancestry individuals	5q33.3	NR	rs6896579-?	NR	3E-6	(TIMD3)			Illumina [~ 4000000] (imputed)	N
1779	chr5	156577719	156577720	rs13360007	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	5q33.3		rs13360007-G	NR	3E-9		0.078	[0.052-0.104] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1779	chr5	156577719	156577720	rs13360007	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	5q33.3	MED7	rs13360007-G	0.135676	5E-9		0.07798361	[0.052-0.104] unit increase	Affymetrix [7288503] (imputed)	N
1779	chr5	156577719	156577720	rs13360007	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	5q33.3		rs13360007-?	NR	6E-8				NR [~ 8900000] (imputed)	N
1779	chr5	156590154	156590155	rs140209435	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q33.3	NR	rs140209435-A	0.01394	2E-8	(DCN)	0.06205	NR unit increase	Illumina [1671387] (imputed)	N
1779	chr5	156590354	156590355	rs31220	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	5q33.3	FAM71B	rs31220-G	NR	3E-6		1.0648494	NR	Affymetrix, Illumina [8278136] (imputed)	N
1779	chr5	156608999	156609000	rs411174	21368711	Alliey-Rodriguez N	2011-03-02	Psychiatr Genet	Genome-wide association study of personality traits in bipolar patients.	Personality traits in bipolar disorder	1,951 European ancestry cases	NA	5q33.3	ITK	rs411174-?	NR	1E-6	(ZKPQ-neuroticism anxiety)			Affymetrix [702866]	N
1779	chr5	156612467	156612468	rs10066955	32460577	Song L	2020-05-28	Arterioscler Thromb Vasc Biol	Association of TIM-1 (T-Cell Immunoglobulin and Mucin Domain 1) With Incidence of Stroke.	T-Cell Immunoglobulin and Mucin domain 1 levels	4,505 European ancestry individuals	NA	5q33.3	ITK	rs10066955-C		8E-12		0.11	[0.079-0.141] unit decrease	Illumina [7328171] (imputed)	N
1779	chr5	156625762	156625763	rs163433	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	5q33.3	ITK	rs163433-T	0.4968	3E-10		0.0116124	[0.008-0.0152] unit decrease	NR [13737936] (imputed)	N
1779	chr5	156627386	156627387	rs6873969	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	5q33.3		rs6873969-?	NR	8E-9				NR [~ 8900000] (imputed)	N
1779	chr5	156627386	156627387	rs6873969	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	5q33.3		rs6873969-?	NR	1E-9		0.0128631	[0.0086-0.0171] unit decrease	Affymetrix [20259828] (imputed)	N
1779	chr5	156629848	156629849	rs111782388	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Respiratory diseases	approximately 459,000 European ancestry individuals	NA	5q33.3		rs111782388-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1780	chr5	156636711	156636712	rs75355720	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	5q33.3	NR	rs75355720-?	NR	9E-10				Affymetrix [~ 8270000] (imputed)	N
1780	chr5	156655014	156655015	rs450067	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	5q33.3	ITK	rs450067-T	0.701335	5E-11		0.015914168	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1780	chr5	156655014	156655015	rs450067	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	5q33.3		rs450067-?	NR	2E-12				NR [~ 8900000] (imputed)	N
1780	chr5	156664204	156664205	rs13158276	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	5q33.3		rs13158276-G	NR	9E-9		0.0105	[0.007-0.014] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
1780	chr5	156664977	156664978	rs30117	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Daytime sleep phenotypes	874 European ancestry individuals	NA	5q33.3	ITK, AC010609.1, CYFIP2, FAM71B	rs30117-T	NR	7E-6	(daytime napping)	0.6067	[0.34-0.87] unit decrease	Affymetrix [7141204] (imputed)	N
1780	chr5	156691024	156691025	rs76493820	34103634	Valette K	2021-06-08	Commun Biol	Prioritization of candidate causal genes for asthma in susceptibility loci derived from UK Biobank.	Asthma	56,167 White-British ancestry cases, 352,255 White-British ancestry controls	NA	5q33.3	ITK, CYFIP2	rs76493820-G	0.0579568076502025	8E-10		0.08637423	[0.059-0.114] unit increase	Affymetrix [35186738] (imputed)	N
1780	chr5	156691380	156691381	rs114238718	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	5q33.3	NR	rs114238718-T	NR	3E-15		0.0501	[0.038-0.063] unit decrease	Affymetrix [9000000] (imputed)	N
1780	chr5	156691380	156691381	rs114238718	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	5q33.3	NR	rs114238718-T	NR	1E-9		0.0386	[0.026-0.051] unit increase	Affymetrix [9000000] (imputed)	N
1780	chr5	156691380	156691381	rs114238718	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	5q33.3	NR	rs114238718-T	NR	7E-11		0.0414	[0.029-0.054] unit decrease	Affymetrix [9000000] (imputed)	N
1780	chr5	156703571	156703572	rs1030270	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	5q33.3	CYFIP2	rs1030270-C	0.942781	6E-15		0.00647175	[0.0048-0.0081] unit increase	Affymetrix [13995440] (imputed)	N
1780	chr5	156709341	156709342	rs62383006	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	5q33.3	CYFIP2	rs62383006-A	0.944896	5E-32		0.0133206	[0.011-0.016] unit increase	Affymetrix [13995440] (imputed)	N
1780	chr5	156717169	156717170	rs438830	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (age at voice breaking MTAG)	205,354 European ancestry individuals	NA	5q33.3		rs438830-A	NR	3E-10		0.024618246	[0.017-0.032] years increase	NR [7400000] (imputed)	N
1780	chr5	156726634	156726635	rs76141264	32460577	Song L	2020-05-28	Arterioscler Thromb Vasc Biol	Association of TIM-1 (T-Cell Immunoglobulin and Mucin Domain 1) With Incidence of Stroke.	T-Cell Immunoglobulin and Mucin domain 1 levels	4,505 European ancestry individuals	NA	5q33.3	CYFIP2	rs76141264-A		5E-8		0.297	[0.19-0.4] unit decrease	Illumina [7328171] (imputed)	N
1780	chr5	156736490	156736491	rs57653595	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	5q33.3		rs57653595-G	NR	1E-36		0.0408	[0.035-0.047] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
1780	chr5	156736610	156736611	rs17051932	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	5q33.3	NR	rs17051932-A	0.05528500000000003	9E-10		0.0112112	[0.0076-0.0148] unit increase	Affymetrix [16582909] (imputed)	N
1780	chr5	156736610	156736611	rs17051932	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	5q33.3	NR	rs17051932-A	0.05528500000000003	2E-10		0.0122831	[0.0083-0.0163] unit increase	Affymetrix [16582965] (imputed)	N
1780	chr5	156743082	156743083	rs56686215	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Gamma glutamyl transferase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	5q33.3	CYFIP2	rs56686215-?		4E-14		0.0404	[0.03-0.051] unit increase	Illumina [31500000] (imputed)	N
1780	chr5	156743082	156743083	rs56686215	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Gamma glutamyl transferase levels	118,309 Japanese ancestry individuals	NA	5q33.3	CYFIP2	rs56686215-?	NR	2E-14		0.03928	[0.029-0.049] unit decrease novel	Illumina [6108953] (imputed)	N
1780	chr5	156744765	156744766	rs62389532	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	5q33.3	NR	rs62389532-A	0.946477	6E-13		0.0310339	[0.023-0.039] unit increase	NR [NR]	N
1780	chr5	156752956	156752957	rs11746314	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	5q33.3	CYFIP2	rs11746314-G	0.06	2E-12				NR [> 9500000] (imputed)	N
1780	chr5	156752956	156752957	rs11746314	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	5q33.3	CYFIP2	rs11746314-G	0.056262000000000034	4E-11		1.0896028	[1.06216664837889-1.1177476329021]	NR [9572556] (imputed)	N
1780	chr5	156752956	156752957	rs11746314	31959851	Olafsdottir TA	2020-01-20	Nat Commun	Eighty-eight variants highlight the role of T cell regulation and airway remodeling in asthma pathogenesis.	Asthma	16,247 European ancestry cases, 346,486 European ancestry controls, 52,942 cases, 355,713 controls	NA	5q33.3	CYFIP2, FNDC9, LOC102724404, ITK, NIPAL4, ADAM19	rs11746314-G	0.05824	2E-10		1.09052	[1.06-1.12]	Affymetrix [32463443] (imputed)	N
1780	chr5	156753283	156753284	rs2289850	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	5q33.3	CYFIP2	rs2289850-T	0.95	5E-15		7.82	z-score increase	Affymetrix [4312306] (imputed)	N
1780	chr5	156754250	156754251	rs11743919	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5q33.3		rs11743919-?	NR	8E-18				NR [~ 8900000] (imputed)	N
1780	chr5	156754585	156754587	rs201963900	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	5q33.3		rs201963900-A	NR	5E-10		0.0332	[0.023-0.044] unit decrease	Affymetrix, Illumina [20529698] (imputed)	N
1781	chr5	156772973	156772974	rs11738611	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	5q33.3		rs11738611-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1781	chr5	156797004	156797005	rs10069931	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	5q33.3		rs10069931-T	NR	6E-12		0.0111	[0.008-0.0142] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1781	chr5	156797004	156797005	rs10069931	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	5q33.3	AC008676.3	rs10069931-T	0.3282	3E-13		0.0146	[0.011-0.019] unit decrease	Affymetrix [18391927] (imputed)	N
1781	chr5	156802908	156802909	rs11957006	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	133,471 East Asian ancestry individuals	NA	5q33.3		rs11957006-G	0.224571	5E-15		0.0326361	[0.024-0.041] unit decrease	Illumina [13476165] (imputed)	N
1781	chr5	156802908	156802909	rs11957006	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	5q33.3		rs11957006-G	NR	7E-17		0.0263	[0.02-0.032] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
1781	chr5	156810071	156810072	rs10515750	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FEV1/FVC)	48,943 European ancestry individuals	57,176 European ancestry individuals, 38,199 individuals.	5q33.3	CYFIP2	rs10515750-T	0.0718	5E-13	(conditioned on rs1990950)	0.054	[0.04-0.068] unit decrease	Affymetrix [27624732] (imputed)	N
1781	chr5	156815762	156815763	rs871012	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	5q33.3	NR	rs871012-C	0.44603092920748	5E-6	(IGP26)	0.1473	[0.084-0.21] unit increase	Illumina [~ 2500000] (imputed)	N
1781	chr5	156822195	156822196	rs3087968	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	5q33.3		rs3087968-?	NR	1E-25				NR [~ 8900000] (imputed)	N
1781	chr5	156822873	156822874	rs34080972	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q33.3	NR	rs34080972-T	0.869147	6E-10				Affymetrix, Illumina [17210439] (imputed)	N
1781	chr5	156838262	156838262	rs555618544	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	5q33.3	CTB-109A12.1, ADAM19	rs555618544-CA	0.012	4E-6		0.2086	[0.12-0.3] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1781	chr5	156842033	156842034	rs75976622	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	5q33.3	NR	rs75976622-A	NR	3E-10		0.0386	[0.027-0.051] unit decrease	Affymetrix [9000000] (imputed)	N
1781	chr5	156876150	156876151	rs3844	32460577	Song L	2020-05-28	Arterioscler Thromb Vasc Biol	Association of TIM-1 (T-Cell Immunoglobulin and Mucin Domain 1) With Incidence of Stroke.	T-Cell Immunoglobulin and Mucin domain 1 levels	4,505 European ancestry individuals	NA	5q33.3	ADAM19	rs3844-C		1E-9		0.109	[0.074-0.144] unit increase	Illumina [7328171] (imputed)	N
1782	chr5	156908316	156908317	rs11134766	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	5q33.3	CYFIP2	rs11134766-T	0.0635	2E-16		0.0425	[0.032-0.053] unit decrease	Affymetrix [19819130] (imputed)	N
1782	chr5	156908316	156908317	rs11134766	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	5q33.3	CYFIP2	rs11134766-T	0.0635	8E-38		0.0628	[0.053-0.072] unit decrease	Affymetrix [19819130] (imputed)	N
1782	chr5	156908316	156908317	rs11134766	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	5q33.3	CYFIP2	rs11134766-T	0.0635	1E-12		0.0342	[0.025-0.044] unit decrease	Affymetrix [19819130] (imputed)	N
1782	chr5	156918849	156918850	rs2287749	33909500	Moll M	2021-04-28	Am J Physiol Lung Cell Mol Physiol	A Systematic Analysis of Protein-altering Exonic Variants in Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease	up to 31,465 European ancestry cases, up to 203,688 European ancestry controls, up to 1,413 African ancestry cases, up to 6,080 African ancestry controls, up to 287 East Asian ancestry cases, up to 7,484 East Asian ancestry controls, up to 61 Hispanic cases, up to 613 Hispanic controls	NA	5q33.3	ADAM19	rs2287749-C	0.87	4E-9		1.09	[1.06 -1.12]	Illumina [at least 109036]	N
1782	chr5	156920755	156920756	rs1990950	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FEV1/FVC)	48,943 European ancestry individuals	57,176 European ancestry individuals, 38,199 individuals.	5q33.3	ADAM19	rs1990950-T	0.3906	3E-11		0.045	[0.031-0.059] unit increase	Affymetrix [27624732] (imputed)	N
1782	chr5	156926776	156926777	rs12522418	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	5q33.3	NR	rs12522418-C	0.330852	3E-12		0.014638	[0.011-0.019] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1782	chr5	156929077	156929077	rs113897301	28166215	Hobbs BD	2017-02-06	Nat Genet	Genetic loci associated with chronic obstructive pulmonary disease overlap with loci for lung function and pulmonary fibrosis.	Chronic obstructive pulmonary disease	11,157 European ancestry cases, 36,699 European ancestry controls, 1,142 African American cases, 2,380 African American controls, 199 Korean ancestry cases, 6,741 Korean ancestry controls, 52 Hispanic cases, 548 Hispanic controls.	12,051 European ancestry cases, 11,111 European ancestry controls, 153 Korean ancestry cases, 205 Korean ancestry controls.	5q33.3	ADAM19	rs113897301-A_T	0.17	2E-13		1.16	[1.12,1.21]	Affymetrix, Illumina [NR] (imputed)	N
1782	chr5	156932375	156932376	rs2277027	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	5q33.3	NR	rs2277027-C	0.35	4E-9		1.11	[1.07-1.14]	Affymetrix [9886854] (imputed)	N
1782	chr5	156932375	156932376	rs2277027	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	5q33.3	NR	rs2277027-C	0.35	1E-11			[NR]	Affymetrix [9886854] (imputed)	N
1782	chr5	156932375	156932376	rs2277027	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	5q33.3	NR	rs2277027-C	0.35	6E-15		1.1	[1.08-1.13]	Affymetrix [9886854] (imputed)	N
1782	chr5	156932375	156932376	rs2277027	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	5q33.3	NR	rs2277027-C	0.35	6E-14			[NR]	Affymetrix [9886854] (imputed)	N
1782	chr5	156932375	156932376	rs2277027	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in non-current smokers	16,488 European ancestry cases, 169,688 European ancestry controls	NA	5q33.3	NR	rs2277027-C	0.35	6E-15		1.1	[1.08-1.13]	Affymetrix [9886854] (imputed)	N
1782	chr5	156932375	156932376	rs2277027	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in never smokers	8,631 European ancestry cases, 120,544 European ancestry controls	NA	5q33.3	NR	rs2277027-C	0.35	4E-9		1.11	[1.07-1.14]	Affymetrix [9886854] (imputed)	N
1782	chr5	156932375	156932376	rs2277027	23284291	Hancock DB	2012-12-20	PLoS Genet	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (smoking interaction)	50,047 European ancestry individuals	NA	5q33.3	ADAM19	rs2277027-?	NR	2E-11	(FEV1/FVC, Ever-smoking)			NR [~ 2500000] (imputed)	N
1782	chr5	156932375	156932376	rs2277027	20010835	Hancock DB	2009-12-13	Nat Genet	Meta-analyses of genome-wide association studies identify multiple loci associated with pulmonary function.	Pulmonary function	20,890 European ancestry individuals	16,178 European ancestry individuals	5q33.3	ADAM19	rs2277027-A	0.71	1E-10	(FEV1/FVC)	0.38	[NR] % increase	Affymetrix, Illumina [2534500] (imputed)	N
1782	chr5	156935523	156935524	rs7728609	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ADAM19	5,367 Icelandic ancestry individuals	NA	5q33.3		rs7728609-T	0.3281	1E-33		0.237877	[0.2-0.28] unit decrease	Illumina [7506463] (imputed)	N
1782	chr5	156935523	156935524	rs7728609	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	5q33.3	ADAM19	rs7728609-C	0.67515625	1E-21	(ADAM19, 8948_13_3)	0.24625047	[0.2-0.3] unit increase	Illumina [> 1000000] (imputed)	N
1782	chr5	156936363	156936364	rs1422795	33909500	Moll M	2021-04-28	Am J Physiol Lung Cell Mol Physiol	A Systematic Analysis of Protein-altering Exonic Variants in Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease	up to 31,465 European ancestry cases, up to 203,688 European ancestry controls, up to 1,413 African ancestry cases, up to 6,080 African ancestry controls, up to 287 East Asian ancestry cases, up to 7,484 East Asian ancestry controls, up to 61 Hispanic cases, up to 613 Hispanic controls	NA	5q33.3	ADAM19	rs1422795-C	0.35	2E-17		1.09	[1.07 -1.11]	Illumina [at least 109036]	N
1782	chr5	156937042	156937043	rs10866659	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	5q33.3	ADAM19	rs10866659-G	0.35	1E-16		1.09	[1.07-1.11]	Affymetrix, Illumina [6224355] (imputed)	N
1782	chr5	156938326	156938327	rs6860540	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Inflammatory skin disease	2,079 European ancestry atopic dermatitis cases, 4,212 European ancestry psoriasis cases, 11,899 European ancestry controls	NA	5q33.3	ADAM19	rs6860540-?	NR	5E-6	(Psoriasis)			Affymetrix, Illumina [~ 5200000]	N
1782	chr5	156942284	156942285	rs11740562	20889312	Wang KS	2010-10-01	Schizophr Res	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	5q33.3	NR	rs11740562-?	NR	1E-6		1.5638	[NR]	Affymetrix [722112]	N
1782	chr5	156944198	156944199	rs11134789	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	5q33.3	ADAM19	rs11134789-A	0.3412	5E-25		0.0274	[0.022-0.033] unit decrease	Affymetrix [19819130] (imputed)	N
1782	chr5	156944198	156944199	rs11134789	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	5q33.3	ADAM19	rs11134789-A	0.3412	3E-59		0.0408	[0.036-0.046] unit decrease	Affymetrix [19819130] (imputed)	N
1782	chr5	156944198	156944199	rs11134789	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	5q33.3	ADAM19	rs11134789-A	0.3412	6E-25		0.0254	[0.02-0.03] unit decrease	Affymetrix [19819130] (imputed)	N
1782	chr5	156944198	156944199	rs11134789	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	5q33.3		rs11134789-?	NR	3E-91				NR [~ 8900000] (imputed)	N
1782	chr5	156944894	156944895	rs59327154	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	5q33.3	ADAM19	rs59327154-G	0.177952	1E-9		0.017648736	[0.012-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1782	chr5	156945147	156945148	rs58873874	24322204	Winham SJ	2013-12-10	Mol Psychiatry	Genome-wide association study of bipolar disorder accounting for effect of body mass index identifies a new risk allele in TCF7L2.	Bipolar disorder (body mass index interaction)	388 European ancestry cases, 1,020 European ancestry controls	NA	5q33.3	NR	rs58873874-?	NR	3E-6				NR [up to 8466825] (imputed)	N
1782	chr5	156945656	156945657	rs11466764	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	5q33.3	ADAM19	rs11466764-C	0.157643	3E-9		0.01813498	[0.012-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1782	chr5	156948317	156948318	rs72811310	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	5q33.3	ADAM19	rs72811310-T	0.89	8E-10	(conditional on rs10866659)	1.1	[NR]	Affymetrix, Illumina [6224355] (imputed)	N
1782	chr5	156969682	156969683	rs13355228	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (adrenergics, inhalants)	28,880 European ancestry cases, 147,565 European ancestry controls, 5,880 East Asian ancestry cases, 172,846 East Asian ancestry controls	NA	5q33.3		rs13355228-T	NR	1E-10		0.085	[0.059-0.111] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1782	chr5	156969682	156969683	rs13355228	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	5q33.3	NR	rs13355228-?	NR	8E-10				Affymetrix [~ 8270000] (imputed)	N
1782	chr5	156969682	156969683	rs13355228	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (adrenergics, inhalants)	28,880 European ancestry cases, 147,565 European ancestry controls	NA	5q33.3	ADAM19	rs13355228-T	0.133402	2E-10		0.08499538	[0.059-0.111] unit increase	Affymetrix [7288503] (imputed)	N
1782	chr5	156970143	156970144	rs77372450	24322204	Winham SJ	2013-12-10	Mol Psychiatry	Genome-wide association study of bipolar disorder accounting for effect of body mass index identifies a new risk allele in TCF7L2.	Bipolar disorder (body mass index interaction)	388 European ancestry cases, 1,020 European ancestry controls	NA	5q33.3	NR	rs77372450-?	NR	6E-6				NR [up to 8466825] (imputed)	N
1782	chr5	156994030	156994031	rs11465254	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	5q33.3	ADAM19, AC106801.1	rs11465254-T	0.144458	3E-9		0.01868034	[0.013-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1782	chr5	157002694	157002695	rs11465228	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	5q33.3	ADAM19	rs11465228-T	0.07	6E-11	(conditional on rs10866659)	1.14	[NR]	Affymetrix, Illumina [6224355] (imputed)	N
1782	chr5	157012033	157012034	rs141101505	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q33.3	NR	rs141101505-A	0.0122	4E-9	(TTN)	1.242	NR unit increase	Illumina [1671387] (imputed)	N
1782	chr5	157023303	157023304	rs1895338	31647587	Willems EL	2019-10-24	Genet Epidemiol	Transethnic meta-analysis of metabolic syndrome in a multiethnic study.	Triglyceride levels	281 African American individuals from 73 families, 516 European American individuals from 75 families, 125 East Asian ancestry individuals from 15 families, 598 Mexican American individuals from 96 families	NA	5q33.3	ADAM19, SOX30	rs1895338-?	NR	6E-7	(Random Effects)			Illumina [3153931] (imputed)	N
1783	chr5	157055490	157055491	rs11954649	28898252	Wheeler E	2017-09-12	PLoS Med	Impact of common genetic determinants of Hemoglobin A1c on type 2 diabetes risk and diagnosis in ancestrally diverse populations: A transethnic genome-wide meta-analysis.	Glycated hemoglobin levels	7,564 African American individuals	NA	5q33.3	SOX30	rs11954649-G	0.045	4E-8		0.1191	[0.077-0.161] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1783	chr5	157081814	157081815	rs111297908	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q33.3	NR	rs111297908-T	0.0122	9E-13	(CA1)	3.427	NR unit increase	Illumina [1671387] (imputed)	N
1783	chr5	157081814	157081815	rs111297908	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q33.3	NR	rs111297908-T	0.0122	8E-9	(TTN)	1.219	NR unit increase	Illumina [1671387] (imputed)	N
1783	chr5	157081814	157081815	rs111297908	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q33.3	NR	rs111297908-T	0.0122	6E-9	(HBD)	4.517	NR unit increase	Illumina [1671387] (imputed)	N
1783	chr5	157081814	157081815	rs111297908	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q33.3	NR	rs111297908-T	0.0122	5E-10	(ECI2)	7.406	NR unit increase	Illumina [1671387] (imputed)	N
1783	chr5	157081814	157081815	rs111297908	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q33.3	NR	rs111297908-T	0.0122	2E-9	(HBG1)	14.76	NR unit increase	Illumina [1671387] (imputed)	N
1783	chr5	157098755	157098756	rs11740603	33909500	Moll M	2021-04-28	Am J Physiol Lung Cell Mol Physiol	A Systematic Analysis of Protein-altering Exonic Variants in Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease	up to 31,465 European ancestry cases, up to 203,688 European ancestry controls, up to 1,413 African ancestry cases, up to 6,080 African ancestry controls, up to 287 East Asian ancestry cases, up to 7,484 East Asian ancestry controls, up to 61 Hispanic cases, up to 613 Hispanic controls	NA	5q33.3	C5orf52	rs11740603-T	0.14	1E-7		1.08	[1.05 -1.11]	Illumina [at least 109036]	N
1783	chr5	157102158	157102159	rs10051838	32733355	Ryu HS	2020-07-07	Front Neurol	Genomic Analysis Identifies New Loci Associated With Motor Complications in Parkinson's Disease.	Motor fluctuations in levodopa treated Parkinson's disease	219 Korean ancestry cases, 522 Korean ancestry controls	NA	5q33.3	C5orf52	rs10051838-A	0.09	9E-6		2.09	[1.50-2.91]	Affymetrix [583535] (imputed)	N
1783	chr5	157110473	157110474	rs55910052	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	5q33.3	NR	rs55910052-A	0.358502	6E-10		0.013152	[0.009-0.0173] SD unit decrease	Affymetrix, Illumina [50282193] (imputed)	N
1783	chr5	157117952	157117953	rs149565529	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 5 levels	252 European ancestry individuals	NA	5q33.3		rs149565529-G	NR	5E-6		0.53897	[0.31-0.77] unit decrease	Illumina [NR] (imputed)	N
1783	chr5	157121060	157121061	rs62387716	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	5q33.3		rs62387716-?	NR	4E-12				NR [~ 8900000] (imputed)	N
1784	chr5	157164888	157164889	rs2270813	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	5q33.3	THG1L	rs2270813-C	0.648099	6E-20		0.021113353	[0.017-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1784	chr5	157164888	157164889	rs2270813	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	5q33.3		rs2270813-?	NR	6E-18				NR [~ 8900000] (imputed)	N
1784	chr5	157164961	157164962	rs2270812	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q33.3	NR	rs2270812-T	0.349064	1E-22				Affymetrix, Illumina [22063850] (imputed)	N
1784	chr5	157164961	157164962	rs2270812	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	5q33.3	NR	rs2270812-T	0.350753	2E-25		0.020536	[0.017-0.024] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
1784	chr5	157192201	157192202	rs7700500	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	5q33.3	LSM11	rs7700500-A	0.649677	1E-15		0.018929213	[0.014-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1784	chr5	157192201	157192202	rs7700500	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	5q33.3	LSM11	rs7700500-A	0.649719	9E-16		0.0190814	[0.014-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1785	chr5	157298829	157298830	rs62387962	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	5q33.3		rs62387962-T	0.143144	2E-25		0.033631463	[0.027-0.04] unit increase	Affymetrix [93095623] (imputed)	N
1785	chr5	157298829	157298830	rs62387962	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	5q33.3	intergenic	rs62387962-T	0.1436	2E-9		0.03074206	[0.021-0.041] unit increase	Affymetrix [~ 2500000] (imputed)	N
1785	chr5	157337149	157337150	rs34604401	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	5q33.3	Intergenic	rs34604401-C	0.5461	2E-11	(MTAG)	0.0111	[0.0078-0.0144] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1785	chr5	157337149	157337150	rs34604401	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	5q33.3	Intergenic	rs34604401-C	0.547	7E-10	(MTAG)	0.0081	[0.0056-0.0106] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1785	chr5	157373242	157373243	rs182720683	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	5q33.3	NR	rs182720683-A	0.020828	2E-12		0.0782168	[0.057-0.1] unit increase	NR [19129689] (imputed)	N
1785	chr5	157403409	157403410	rs17055178	31095341	Kerns SL	2019-05-16	J Natl Cancer Inst	Radiogenomics Consortium Genome-Wide Association Study Meta-analysis of Late Toxicity after Prostate Cancer Radiotherapy.	Toxicity response to radiotherapy in prostate cancer (rectal bleeding) (time to event)	3,379 European ancestry individuals	NA	5q33.3	NR	rs17055178-G	0.09	6E-10		1.95	[1.58-2.40]	Affymetrix, Illumina [~ 6000000] (imputed)	N
1785	chr5	157410277	157410278	rs11958404	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	5q33.3	NR	rs11958404-T	0.113988281514477	8E-6	(IGP49)	0.231	[0.13-0.33] unit increase	Illumina [~ 2500000] (imputed)	N
1785	chr5	157410277	157410278	rs11958404	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	5q33.3	NR	rs11958404-T	0.113988281514477	1E-6	(IGP9)	0.2522	[0.15-0.35] unit increase	Illumina [~ 2500000] (imputed)	N
1786	chr5	157445459	157445460	rs59679367	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	5q33.3		rs59679367-?	NR	7E-20				NR [~ 8900000] (imputed)	N
1786	chr5	157456996	157456997	rs17242380	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	5q33.3		rs17242380-?	NR	2E-20				NR [~ 8900000] (imputed)	N
1786	chr5	157460730	157460731	rs3117738	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	5q33.3	NR	rs3117738-C	0.269772	1E-21		0.0339953	[0.027-0.041] unit decrease	NR [19129689] (imputed)	N
1786	chr5	157464019	157464020	rs36056823	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Hepatitis A	2,442 European ancestry cases, 217,137 European ancestry controls	NA	5q33.3	NR	rs36056823-?	NR	8E-6		0.1711	[0.095-0.247] unit increase	Illumina [at least 560000] (imputed)	N
1786	chr5	157482257	157482258	rs2984644	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls	NA	5q33.3	U2	rs2984644-A	0.268206	9E-10		0.054463327	[0.037-0.072] unit increase	Affymetrix [7288503] (imputed)	N
1786	chr5	157482257	157482258	rs2984644	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	5q33.3	U2	rs2984644-A	0.269037	5E-11		0.044590842	[0.031-0.058] unit increase	Affymetrix [7288503] (imputed)	N
1786	chr5	157494858	157494859	rs2962383	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls	NA	5q33.3	U2	rs2962383-T	0.301942	4E-8		0.04828694	[0.031-0.066] unit increase	Affymetrix [7288503] (imputed)	N
1786	chr5	157494858	157494859	rs2962383	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	5q33.3		rs2962383-?	NR	6E-17				NR [~ 8900000] (imputed)	N
1786	chr5	157520584	157520585	rs6860897	31560688	Geidenstam N	2019-09-27	PLoS One	Using metabolite profiling to construct and validate a metabolite risk score for predicting future weight gain.	Triacylglycerol 56:2 levels	1,937 individuals	NA	5q33.3	intergenic	rs6860897-G	0.996	1E-6		1.3981	[0.84-1.96] unit increase	Affymetrix, Illumina [up to 22000000] (imputed)	N
1786	chr5	157526366	157526367	rs13182707	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA		NR	rs13182707-?	NR	2E-8	(cerebellar vermal lobules VI VII)			NR [9227495] (imputed)	N
1786	chr5	157531968	157531969	rs4704916	31194736	Tiensuu H	2019-06-13	PLoS Genet	Risk of spontaneous preterm birth and fetal growth associates with fetal SLIT2.	Spontaneous preterm birth with premature rupture of membranes	133 Finnish ancestry infant cases, 419 Finnish ancestry infant controls	NA	5q33.3	LOC105377677, LOC107986466	rs4704916-?	NR	8E-6		2.13		Illumina [6778521] (imputed)	N
1786	chr5	157531968	157531969	rs4704916	31194736	Tiensuu H	2019-06-13	PLoS Genet	Risk of spontaneous preterm birth and fetal growth associates with fetal SLIT2.	Spontaneous preterm birth (preterm birth)	247 Finnish ancestry infant cases, 419 Finnish ancestry infant controls	NA	5q33.3		rs4704916-?	NR	2E-6		1.91	[1.45-2.52]	Illumina [6778521] (imputed)	N
1787	chr5	157596205	157596206	rs150532297	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	5q33.3		rs150532297-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1787	chr5	157661870	157661871	rs1173470	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	5q33.3	NR	rs1173470-C	0.428	1E-11		0.00740869	[0.0053-0.0096] unit increase	NR [9732723] (imputed)	N
1787	chr5	157671788	157671789	rs1177762	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	5q33.3		rs1177762-G	0.679	2E-11		0.008	[0.006-0.01] unit decrease	NR [NR] (imputed)	N
1788	chr5	157683524	157683525	rs11957368	23934736	Yu B	2013-08-11	Genet Epidemiol	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels (Dihydroxy docosatrienoic acid)	1,260 African American individuals	NA	5q33.3	LOC100130177	rs11957368-C		4E-6		0.15	[0.09-0.21] unit increase	Affymetrix [~ 2500000] (imputed)	N
1788	chr5	157707570	157707571	rs1173461	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	5q33.3	NR	rs1173461-T	0.327	1E-9		0.016609173	[0.011-0.022] unit increase	NR [~ 10000000] (imputed)	N
1788	chr5	157708837	157708838	rs62385132	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Non-melanoma skin cancer	5,912 European ancestry cases, 181,740 European ancestry controls		5q33.3	NR	rs62385132-A	NR	5E-6		1.1438	[1.07957-1.21185]	Affymetrix [5734850] (imputed)	N
1788	chr5	157713082	157713083	rs35147325	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	5q33.3	intergenic	rs35147325-T	0.2401	1E-12		0.2083	[0.15-0.27] mmHg decrease	Affymetrix [NR] (imputed)	N
1788	chr5	157727912	157727913	rs882886	32141793	Garman L	2020-03-06	Ocul Immunol Inflamm	Genome-Wide Association Study of Ocular Sarcoidosis Confirms HLA Associations and Implicates Barrier Function and Autoimmunity in African Americans.	Ocular sarcoidosis	260 African American cases, 1,551 African American controls	NA	5q33.3	NR	rs882886-C	NR	3E-6		1.573	[1.30-1.90]	Illumina [13976150] (imputed)	N
1788	chr5	157729056	157729057	rs1952664	32141793	Garman L	2020-03-06	Ocul Immunol Inflamm	Genome-Wide Association Study of Ocular Sarcoidosis Confirms HLA Associations and Implicates Barrier Function and Autoimmunity in African Americans.	Ocular sarcoidosis	260 African American cases, 1,551 African American controls	NA	5q33.3	NR	rs1952664-?	NR	3E-7		1.6688918	[1.37-2.04]	Illumina [13976150] (imputed)	N
1788	chr5	157734761	157734762	rs13160204	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	5q33.3	EBF1	rs13160204-A	0.3009	2E-8		0.012288251	[0.008-0.0166] unit increase	Affymetrix [11514654] (imputed)	N
1788	chr5	157743294	157743295	rs11135030	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking initiation (ever regular vs never regular)	up to 433,216 European ancestry individuals	NA	5q33.3	EBF1	rs11135030-T	0.306	8E-10		0.0152	[0.01-0.02] unit increase	Illumina [~ 250000] (imputed)	N
1788	chr5	157743316	157743317	rs12188904	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	5q33.3		rs12188904-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1788	chr5	157803629	157803630	rs7442660	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls, 20,367 East Asian ancestry cases, 158,359 East Asian ancestry controls	NA	5q33.3		rs7442660-A	NR	2E-11		0.0512	[0.036-0.066] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1788	chr5	157803629	157803630	rs7442660	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls	NA	5q33.3	RP11-542A14.1	rs7442660-A	0.36088	1E-11		0.058263786	[0.041-0.075] unit decrease	Affymetrix [7288503] (imputed)	N
1788	chr5	157804456	157804457	rs9313772	21909110	Wain LV	2011-09-11	Nat Genet	Genome-wide association study identifies six new loci influencing pulse pressure and mean arterial pressure.	Blood pressure	74,064 European ancestry individuals	48,607 European ancestry individuals	5q33.3	EBF1	rs9313772-T	0.32	1E-11	(Mean Arterial Pressure)	0.335	[0.24-0.44] mmHg decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1789	chr5	157811087	157811088	rs1952652	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption (light vs heavy) interaction (2df test)	12,758 European ancestry heavy drinkers, 1,326 African American or Afro-Caribbean heavy drinkers, 648 Asian ancestry heavy drinkers, 364 Hispanic or Latin American heavy drinkers, 43,947 European ancestry light drinkers, 8,239 African American or Afro-Caribbean light drinkers, 1,141 Asian ancestry light drinkers, 4,448 Hispanic or Latin American light drinkers	42,078 European ancestry heavy drinkers, 217 African American heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic heavy drinkers, 74,706 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	5q33.3	LOC101927697, EBF1	rs1952652-A	0.65	3E-11	(AA, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1789	chr5	157811087	157811088	rs1952652	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption (light vs heavy) interaction (2df test)	56,705 European ancestry heavy and light drinkers, 9,725 African American or Afro-Caribbean heavy and light drinkers, 1,789 Asian ancestry heavy and light drinkers, 4,812 Hispanic or Latin American heavy and light drinkers	42,077 European ancestry heavy drinkers, 217 African American heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic ancestry heavy drinkers, 74,701 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	5q33.3	LOC101927697, EBF1	rs1952652-A	0.65	4E-10	(AA, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1789	chr5	157814227	157814228	rs12716337	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	5q33.3	NR	rs12716337-T		6E-8	(EA)	0.332	unit increase	Affymetrix [at least 2696785] (imputed)	N
1789	chr5	157814227	157814228	rs12716337	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	5q33.3	NR	rs12716337-T		2E-9		0.331	unit increase	Affymetrix [at least 2696785] (imputed)	N
1789	chr5	157814227	157814228	rs12716337	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	5q33.3	NR	rs12716337-T		1E-21		0.376	unit increase	Affymetrix [at least 2696785] (imputed)	N
1789	chr5	157814227	157814228	rs12716337	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	5q33.3	NR	rs12716337-T		5E-9		0.153	unit increase	Affymetrix [at least 2696785] (imputed)	N
1789	chr5	157814227	157814228	rs12716337	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	5q33.3	NR	rs12716337-T		6E-9		0.211	unit increase	Affymetrix [at least 2696785] (imputed)	N
1789	chr5	157814227	157814228	rs12716337	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	5q33.3	NR	rs12716337-T		2E-6	(EA)	0.187	unit increase	Affymetrix [at least 2696785] (imputed)	N
1789	chr5	157814227	157814228	rs12716337	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	5q33.3	NR	rs12716337-T		7E-20		0.22	unit increase	Affymetrix [at least 2696785] (imputed)	N
1789	chr5	157816126	157816127	rs7719885	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	5q33.3	intergenic	rs7719885-G	0.6222	8E-26		0.3611	[0.29-0.43] mmHg increase	Affymetrix [NR] (imputed)	N
1789	chr5	157817633	157817634	rs11960210	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption interaction (2df test)	63,608 European ancestry drinkers, 10,193 African American or Afro-Caribbean heavy drinkers,  2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,494 European ancestry non-drinkers, 11,224 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,002 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,452 Hispanic drinkers, 43,316 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,945 Asian ancestry non-drinkers, 6,925 Hispanic non-drinkers	5q33.3	LOC101927697, EBF1	rs11960210-T	0.66	5E-28	(AA, Asian, EA, Hispanic)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1789	chr5	157817633	157817634	rs11960210	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Pulse pressure x alcohol consumption interaction (2df test)	91,099 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	238,053 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,447 Hispanic ancestry drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic ancestry non-drinkers	5q33.3	LOC101927697, EBF1	rs11960210-T	0.67	5E-11	(Asian, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1789	chr5	157818739	157818740	rs74620148	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	5q33.3	NR	rs74620148-?	NR	6E-6				Affymetrix [5486770] (imputed)	N
1789	chr5	157819623	157819624	rs10051330	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption interaction (2df test)	63,607 European ancestry drinkers, 10,193 African American or Afro-Caribbean drinkers, 2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,492 European ancestry non-drinkers, 11,223 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,058 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	5q33.3	LOC101927697, EBF1	rs10051330-A	0.66	4E-23	(AA, EA, Hispanic)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1789	chr5	157820601	157820602	rs2149954	24688116	Deelen J	2014-03-31	Hum Mol Genet	Genome-wide association meta-analysis of human longevity identifies a novel locus conferring survival beyond 90 years of age.	Longevity (90 years and older)	5,406 European ancestry cases, 15,112 European ancestry controls	7,330 European ancestry cases, 61,156 European ancestry controls	5q33.3	EBF1	rs2149954-T	0.352	2E-8		1.1	[1.06-1.74]	Illumina [2470825] (imputed)	N
1789	chr5	157820601	157820602	rs2149954	24688116	Deelen J	2014-03-31	Hum Mol Genet	Genome-wide association meta-analysis of human longevity identifies a novel locus conferring survival beyond 90 years of age.	Longevity (85 years and older)	7,729 European ancestry cases, 16,121 European ancestry controls	13,060 European ancestry cases, 61,156 European ancestry controls	5q33.3	EBF1	rs2149954-T	0.352	4E-6		1.07	[1.04-1.09]	Illumina [2480356] (imputed)	N
1789	chr5	157824480	157824481	rs7701003	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls, 22,356 East Asian ancestry cases, 156,370 East Asian ancestry controls	NA	5q33.3		rs7701003-G	NR	1E-19		0.0739	[0.058-0.09] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1789	chr5	157824480	157824481	rs7701003	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls, 49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	5q33.3		rs7701003-G	NR	5E-13		0.0599	[0.044-0.076] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1789	chr5	157824480	157824481	rs7701003	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	5q33.3		rs7701003-G	NR	1E-18		0.0551	[0.043-0.067] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1789	chr5	157824480	157824481	rs7701003	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls	NA	5q33.3	RP11-542A14.1	rs7701003-G	0.370273	1E-19		0.07390825	[0.058-0.09] unit decrease	Affymetrix [7288503] (imputed)	N
1789	chr5	157824480	157824481	rs7701003	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls	NA	5q33.3	RP11-542A14.1	rs7701003-G	0.370667	5E-13		0.059909914	[0.044-0.076] unit decrease	Affymetrix [7288503] (imputed)	N
1789	chr5	157824480	157824481	rs7701003	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	5q33.3	RP11-542A14.1	rs7701003-G	0.369354	1E-18		0.055057067	[0.043-0.067] unit decrease	Affymetrix [7288503] (imputed)	N
1789	chr5	157824480	157824481	rs7701003	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	5q33.3		rs7701003-?	NR	2E-32				NR [~ 8900000] (imputed)	N
1789	chr5	157824480	157824481	rs7701003	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	5q33.3		rs7701003-?	NR	1E-25				NR [~ 8900000] (imputed)	N
1789	chr5	157844104	157844105	rs71585962	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption interaction (2df test)	63,608 European ancestry drinkers, 10,193 African American or Afro-Caribbean heavy drinkers,  2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,494 European ancestry non-drinkers, 11,224 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,002 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,452 Hispanic drinkers, 43,316 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,945 Asian ancestry non-drinkers, 6,925 Hispanic non-drinkers	5q33.3	LOC101927697, EBF1	rs71585962-A	0.37	7E-23	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1789	chr5	157845024	157845025	rs62386479	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Systolic blood pressure	140,882 European ancestry individuals	190,318 European ancestry individuals	5q33.3	EBF1	rs62386479-A	0.07724654	1E-13		0.6624	[0.49-0.84] unit increase	Affymetrix [~ 9800000] (imputed)	N
1789	chr5	157845401	157845402	rs11953630	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure (cigarette smoking interaction)	80,552 European ancestry individuals, 27,118 African individuals, 13,438 Asian individuals, 8,805 Hispanic individuals	305,513 European ancestry individuals, 7,786 African individuals, 148,932 Asian individuals, 13,533 Hispanic individuals, 4,414 Brazilian individuals	5q33.3	EBF1	rs11953630-?	NR	1E-28				Affymetrix, Illumina [18800000] (imputed)	N
1789	chr5	157845401	157845402	rs11953630	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure (cigarette smoking interaction)	80,552 European ancestry individuals, 27,118 African individuals, 13,438 Asian individuals, 8,805 Hispanic individuals	305,513 European ancestry individuals, 7,786 African individuals, 148,932 Asian individuals, 13,533 Hispanic individuals, 4,414 Brazilian individuals	5q33.3	EBF1	rs11953630-?		7E-23				Affymetrix, Illumina [18800000] (imputed)	N
1789	chr5	157845401	157845402	rs11953630	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Systolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	5q33.3	EBF1	rs11953630-T	0.368	2E-11	(EA, initial)	0.503	[0.36-0.65] unit decrease	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
1789	chr5	157845401	157845402	rs11953630	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Pulse pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	5q33.3	EBF1	rs11953630-T	0.368	7E-6	(EA, initial)	0.218	[0.12-0.31] unit decrease	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
1789	chr5	157845401	157845402	rs11953630	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Diastolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	5q33.3	EBF1	rs11953630-T	0.368	2E-9	(EA, initial)	0.273	[0.18-0.36] unit decrease	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
1789	chr5	157845401	157845402	rs11953630	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	5q33.3	CLINT1, EBF1	rs11953630-C		6E-8	(EA)	0.336	unit increase	Affymetrix [at least 2696785] (imputed)	N
1789	chr5	157845401	157845402	rs11953630	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	5q33.3	CLINT1, EBF1	rs11953630-C		2E-7		0.303	unit increase	Affymetrix [at least 2696785] (imputed)	N
1789	chr5	157845401	157845402	rs11953630	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	5q33.3	CLINT1, EBF1	rs11953630-C		1E-19		0.362	unit increase	Affymetrix [at least 2696785] (imputed)	N
1789	chr5	157845401	157845402	rs11953630	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	5q33.3	CLINT1, EBF1	rs11953630-C		1E-7		0.142	unit increase	Affymetrix [at least 2696785] (imputed)	N
1789	chr5	157845401	157845402	rs11953630	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	5q33.3	CLINT1, EBF1	rs11953630-C		7E-8		0.203	unit increase	Affymetrix [at least 2696785] (imputed)	N
1789	chr5	157845401	157845402	rs11953630	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	5q33.3	CLINT1, EBF1	rs11953630-C		2E-7	(EA)	0.21	unit increase	Affymetrix [at least 2696785] (imputed)	N
1789	chr5	157845401	157845402	rs11953630	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	5q33.3	CLINT1, EBF1	rs11953630-C		3E-19		0.218	unit increase	Affymetrix [at least 2696785] (imputed)	N
1789	chr5	157845401	157845402	rs11953630	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Systolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	5q33.3	EBF1	rs11953630-T	0.366	4E-9		0.38	[0.25-0.51] mm Hg decrease	Affymetrix, Illumina, Perlegen [128272]	N
1789	chr5	157845401	157845402	rs11953630	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Diastolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	5q33.3	EBF1	rs11953630-T	0.366	8E-9		0.23	[0.15-0.31] mm Hg decrease	Affymetrix, Illumina, Perlegen [128272]	N
1789	chr5	157845401	157845402	rs11953630	26390057	Kato N	2015-09-21	Nat Genet	Trans-ancestry genome-wide association study identifies 12 genetic loci influencing blood pressure and implicates a role for DNA methylation.	Systolic blood pressure	31,516 East Asian ancestry individuals,  35,352 European ancestry individuals, 33,126 South Asian ancestry individuals	87,205 individuals, 48,268 East Asian ancestry individuals, 68,456 European ancestry individuals and 16,328 South Asian ancestry individuals	5q33.3	EBF1	rs11953630-T	0.3053	2E-7		0.5937	[0.37-0.82] mmHg decrease	Affymetrix, Illumina, Perlegen [2127883] (imputed)	N
1789	chr5	157845401	157845402	rs11953630	21909115	Ehret GB	2011-09-11	Nature	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Systolic blood pressure	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	5q33.3	EBF1	rs11953630-T	0.37	3E-11		0.412	[NR] mmHg decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1789	chr5	157845401	157845402	rs11953630	21909115	Ehret GB	2011-09-11	Nature	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Hypertension	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	5q33.3	EBF1	rs11953630-T	0.37	2E-7		0.052	[NR] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1789	chr5	157845401	157845402	rs11953630	21909115	Ehret GB	2011-09-11	Nature	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Diastolic blood pressure	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	5q33.3	EBF1	rs11953630-T	0.37	4E-13		0.281	[NR] mmHg decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1789	chr5	157868130	157868131	rs7446877	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption interaction (2df test)	63,608 European ancestry drinkers, 10,193 African American or Afro-Caribbean heavy drinkers,  2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,494 European ancestry non-drinkers, 11,224 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,002 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,452 Hispanic drinkers, 43,316 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,945 Asian ancestry non-drinkers, 6,925 Hispanic non-drinkers	5q33.3	LOC105377681, EBF1	rs7446877-T	0.35	4E-26	(AA, EA, Hispanic)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1789	chr5	157868130	157868131	rs7446877	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption interaction (2df test)	63,607 European ancestry drinkers, 10,193 African American or Afro-Caribbean drinkers, 2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,492 European ancestry non-drinkers, 11,223 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,058 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	5q33.3	LOC105377681, EBF1	rs7446877-T	0.37	1E-19	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1789	chr5	157868130	157868131	rs7446877	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption interaction (2df test)	63,607 European ancestry drinkers, 10,193 African American or Afro-Caribbean drinkers, 2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,492 European ancestry non-drinkers, 11,223 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,058 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	5q33.3	LOC105377681, EBF1	rs7446877-T	0.35	1E-21	(AA, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1789	chr5	157877452	157877453	rs4371736	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption interaction (2df test)	91,110 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	237,996 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,315 European ancestry non-drinkers, 2,761 African ancestry non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	5q33.3	LOC105377681, EBF1	rs4371736-C	0.42	2E-54	(AA, EA, Hispanic)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1789	chr5	157878048	157878049	rs10069648	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	5q33.3		rs10069648-?	NR	2E-25				NR [~ 8900000] (imputed)	N
1789	chr5	157879263	157879264	rs6556349	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	5q33.3	NR	rs6556349-G	0.45839	5E-27		0.0339041	[0.028-0.04] unit increase	NR [19129689] (imputed)	N
1789	chr5	157879488	157879489	rs6556350	28272467	Heilmann-Heimbach S	2017-03-08	Nat Commun	Meta-analysis identifies novel risk loci and yields systematic insights into the biology of male-pattern baldness.	Male-pattern baldness	10,846 European ancestry cases, 11,672 European ancestry controls	NA	5q33.3		rs6556350-T	0.47	3E-8		0.11	[0.071-0.149] unit increase	Affymetrix, Illumina [8004650] (imputed)	N
1789	chr5	157880001	157880002	rs6881640	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	5q33.3	NR	rs6881640-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1789	chr5	157884705	157884706	rs2946164	31097437	Plotnikov D	2019-05-16	Br J Ophthalmol	Association between birth weight and refractive error in adulthood: a Mendelian randomisation study.	Birth weight	188,039 European ancestry individuals	NA	5q33.3	NR	rs2946164-T	0.27	3E-9		0.022	[0.014-0.03] z score increase	Affymetrix [up to 10400000] (imputed)	N
1789	chr5	157886626	157886627	rs2946179	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	5q33.3	EBF1	rs2946179-C	0.735384	2E-37		0.045528	[0.039-0.052] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
1789	chr5	157886626	157886627	rs2946179	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	5q33.3	EBF1	rs2946179-C	0.733706	1E-11		0.019781	[0.014-0.025] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1789	chr5	157886952	157886953	rs7729301	27680694	Horikoshi M	2016-10-13	Nature	Genome-wide associations for birth weight and correlations with adult disease.	Birth weight	133,903 European ancestry individuals, 6,635 African American individuals, 420 Turkish ancestry individuals, 365 Moroccan ancestry individuals, 395 Surinamese ancestry individuals, 840 Chinese ancestry individuals.	9,799 European ancestry individuals, 1,449 Filipino ancestry individuals.	5q33.3	EBF1	rs7729301-A	0.72	1E-9		0.0246	[0.017-0.032] unit increase	Affymetrix, Illumina [at least 22434434] (imputed)	N
1789	chr5	157895012	157895013	rs13170063	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	5q33.3	AC091979.2	rs13170063-A	0.5921	4E-15		0.0152	[0.011-0.019] unit decrease	Affymetrix [18391927] (imputed)	N
1789	chr5	157895048	157895049	rs2963463	28877031	Zhang G	2017-09-07	N Engl J Med	Genetic Associations with Gestational Duration and Spontaneous Preterm Birth.	Preterm birth (maternal effect)	3,331 European ancestry preterm birth mothers, 40,236 European ancestry term birth mothers	2,565 European ancestry preterm birth mothers, 6,034 European ancestry term birth mothers	5q33.3	EBF1	rs2963463-T	0.272	5E-15		1.23	[NR]	Illumina [15635593] (imputed)	N
1789	chr5	157895048	157895049	rs2963463	28877031	Zhang G	2017-09-07	N Engl J Med	Genetic Associations with Gestational Duration and Spontaneous Preterm Birth.	Gestational age at birth (maternal effect)	43,568 European ancestry mothers	8,643 European ancestry mothers	5q33.3	EBF1	rs2963463-T	0.272	8E-24		1.29	[NR] unit decrease	Illumina [15635593] (imputed)	N
1789	chr5	157914667	157914669	rs33940264	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	5q33.3		rs33940264-G	NR	3E-12		0.0145	[0.01-0.019] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
1789	chr5	157917274	157917275	rs4563609	25108383	Geller F	2014-08-10	Nat Genet	Genome-wide association analyses identify variants in developmental genes associated with hypospadias.	Hypospadias	1,006 European ancestry male child cases, 2,390 European ancestry male child controls, 3,096 European ancestry female child controls	1,972 European ancestry male child cases, 1,401 European ancestry male child controls, 405 European ancestry female child controls, 6 European ancestry child controls	5q33.3	EBF1	rs4563609-A	0.65	3E-7		1.2	[NR]	Illumina [8207076] (imputed)	N
1789	chr5	157925223	157925224	rs62384972	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	5q33.3		rs62384972-C	0.550066	3E-8		0.0151998	[0.0098-0.0206] unit increase	Illumina [13479924] (imputed)	N
1789	chr5	157928195	157928196	rs3934712	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes (adjusted for BMI)	50,409 European ancestry cases, 523,897 European ancestry controls	NA	5q33.3	EBF1	rs3934712-C	0.2057	3E-8		1.05	[1.03-1.07]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1789	chr5	157930132	157930133	rs11135038	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Triglycerides	429,011 European ancestry individuals	NA	5q33.3		rs11135038-G	0.27	3E-10		0.013	mmol/L decrease	NR [NR] (imputed)	N
1789	chr5	157930132	157930133	rs11135038	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Sex hormone-binding globulin levels	389,354 European ancestry individuals	NA	5q33.3		rs11135038-G	0.27	4E-9		0.013	nmol/L increase	NR [NR] (imputed)	N
1789	chr5	157930132	157930133	rs11135038	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	5q33.3		rs11135038-G	0.27	3E-27				NR [NR] (imputed)	N
1789	chr5	157930132	157930133	rs11135038	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	High density lipoprotein cholesterol levels	392,965 European ancestry individuals	NA	5q33.3		rs11135038-G	0.27	8E-11		0.012	mmol/L increase	NR [NR] (imputed)	N
1789	chr5	157930132	157930133	rs11135038	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	5q33.3		rs11135038-G	0.27	3E-16		0.014	% increase	NR [NR] (imputed)	N
1789	chr5	157938069	157938070	rs13358657	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	5q33.3	RP11-32D16.1	rs13358657-G	NR	7E-9		0.0265541	[0.018-0.036] unit increase	Affymetrix [323858] (imputed)	N
1789	chr5	157938069	157938070	rs13358657	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	5q33.3	RP11-32D16.1	rs13358657-G	NR	1E-8		0.0262435	[0.017-0.035] unit increase	Affymetrix [127266] (imputed)	N
1789	chr5	157938069	157938070	rs13358657	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	5q33.3		rs13358657-?	NR	9E-11				NR [~ 8900000] (imputed)	N
1789	chr5	157940010	157940011	rs10476255	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	5q33.3		rs10476255-C	0.743	4E-12				Affymetrix [10369434] (imputed)	N
1789	chr5	157940010	157940011	rs10476255	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	5q33.3		rs10476255-C	0.743	5E-15				Affymetrix [10369434] (imputed)	N
1790	chr5	157945598	157945599	rs9313777	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	5q33.3	RP11-32D16.1	rs9313777-G	0.280929	4E-19		0.022072108	[0.017-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1790	chr5	157945997	157945998	rs112371596	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	5q33.3	NR	rs112371596-T	0.0226367	9E-11		0.0676278	[0.047-0.088] unit increase	NR [19129689] (imputed)	N
1790	chr5	157950510	157950511	rs6879711	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	5q33.3	RP11-32D16.1	rs6879711-G	0.280147	5E-12		0.017040795	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1790	chr5	157952403	157952404	rs1317415	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	5q33.3	intergenic	rs1317415-C	0.302003	2E-8	(females)	0.01511	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1790	chr5	157952403	157952404	rs1317415	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	5q33.3	intergenic	rs1317415-C	0.302003	2E-7		0.01228	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1790	chr5	157952403	157952404	rs1317415	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	5q33.3	intergenic	rs1317415-C	0.302003	5E-11	(females)	0.01816	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1790	chr5	157952403	157952404	rs1317415	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	5q33.3	intergenic	rs1317415-C	0.302003	3E-9		0.01466	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1790	chr5	157954370	157954371	rs6871959	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Creatine kinase levels	106,080 Japanese ancestry individuals	NA	5q33.3	LOC101927697, EBF1	rs6871959-?	NR	5E-8		0.02324	[0.015-0.032] unit decrease novel	Illumina [6108953] (imputed)	N
1790	chr5	157968900	157968901	rs1023667	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting insulin	151,013 European ancestry individuals	NA	5q33.3	LOC101927697	rs1023667-A	0.2709	6E-7		0.0101	[0.0058-0.0144] unit decrease	Affymetrix, Illumina [32635793] (imputed)	N
1790	chr5	157968900	157968901	rs1023667	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	5q33.3		rs1023667-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1790	chr5	157969474	157969475	rs17055818	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	5q33.3		rs17055818-C	0.253917	8E-34		0.030864723	[0.026-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
1790	chr5	157969474	157969475	rs17055818	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q33.3	NR	rs17055818-C	0.284902	9E-42				Affymetrix, Illumina [23472807] (imputed)	N
1790	chr5	157969474	157969475	rs17055818	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	5q33.3	NR	rs17055818-C	0.252258	2E-42		0.029726	[0.025-0.034] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1790	chr5	157973344	157973344	rs763696876	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5q33.3	EBF1	rs763696876-C	0.774123	3E-8	(-14 ms)	0.0363153	[0.023-0.05] unit increase	Affymetrix [10000000] (imputed)	N
1790	chr5	157983113	157983114	rs17055847	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	5q33.3		rs17055847-C	NR	1E-24		0.0229	[0.019-0.027] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
1790	chr5	157986356	157986357	rs17703354	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	5q33.3	NR	rs17703354-?	NR	4E-11				Affymetrix [~ 8270000] (imputed)	N
1790	chr5	157986356	157986357	rs17703354	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	5q33.3	NR	rs17703354-?	NR	3E-10				Affymetrix [~ 8270000] (imputed)	N
1790	chr5	157986356	157986357	rs17703354	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	5q33.3		rs17703354-?	NR	4E-11				NR [~ 8900000] (imputed)	N
1790	chr5	157986581	157986588	rs151205200	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	5q33.3	intergenic	rs151205200-T	0.2955	2E-13		0.02905535	[0.021-0.037] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1790	chr5	157987218	157987219	rs2963482	28087736	Ludwig KU	2017-01-13	Hum Mol Genet	Imputation of orofacial clefting data identifies novel risk loci and sheds light on the genetic background of cleft lip ? cleft palate and cleft palate only.	Nonsyndromic cleft lip with or without cleft palate	399 European ancestry cases, 1,318 European ancestry controls, 666 European ancestry trios, 795 Asian trios	224 European ancestry cases, 921 European ancestry controls, 152 Mayan cases, 323 Mayan controls, 198 Middle Eastern cases, 391 Middle Eastern controls	5q33.3	NR	rs2963482-?		8E-6	(EA)			NR [8012124] (imputed)	N
1790	chr5	157993902	157993902	rs397828854	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	5q33.3		rs397828854-GA	NR	9E-11		0.0123	[0.0086-0.016] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1790	chr5	157993902	157993902	rs397828854	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	5q33.3		rs397828854-GA	NR	2E-9		0.013	[0.0087-0.0173] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1790	chr5	157994543	157994544	rs1030472	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	5q33.3		rs1030472-G	NR	9E-17		0.0202	[0.015-0.025] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
1790	chr5	157994543	157994544	rs1030472	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	5q33.3		rs1030472-G	NR	3E-13		0.0182	[0.013-0.023] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
1790	chr5	157994543	157994544	rs1030472	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	5q33.3	EBF1	rs1030472-A	0.785091	9E-21		0.0228104	[0.018-0.028] unit decrease	Affymetrix [NR] (imputed)	N
1790	chr5	157994543	157994544	rs1030472	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	5q33.3	intergenic	rs1030472-?	NR	3E-13		0.0234	[0.018-0.029] unit increase	Affymetrix [5701386] (imputed)	N
1790	chr5	157998569	157998570	rs2963474	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	5q33.3	NR	rs2963474-A	NR	1E-9		0.0185	[0.013-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
1790	chr5	157999021	157999022	rs2963472	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	5q33.3	EBF1	rs2963472-G	0.785347	6E-14		0.0180661	[0.013-0.023] unit increase	Affymetrix [NR] (imputed)	N
1790	chr5	157999021	157999022	rs2963472	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	5q33.3	LOC101927697, EBF1	rs2963472-A	NR	3E-8	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1790	chr5	157999021	157999022	rs2963472	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	5q33.3	LOC101927697, EBF1	rs2963472-A	NR	3E-11				Affymetrix, Illumina [NR] (imputed)	N
1790	chr5	157999021	157999022	rs2963472	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	5q33.3	LOC101927697, EBF1	rs2963472-A	NR	2E-8	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1790	chr5	157999021	157999022	rs2963472	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	5q33.3	LOC101927697, EBF1	rs2963472-A	NR	2E-11				Affymetrix, Illumina [NR] (imputed)	N
1790	chr5	157999021	157999022	rs2963472	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	5q33.3	LOC101927697, EBF1	rs2963472-A	NR	6E-6	(EA)	0.014	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1790	chr5	157999021	157999022	rs2963472	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	5q33.3	LOC101927697, EBF1	rs2963472-A	NR	2E-8		0.011	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1790	chr5	157999021	157999022	rs2963472	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	5q33.3	LOC101927697, EBF1	rs2963472-A	NR	2E-6		0.01	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1790	chr5	157999021	157999022	rs2963472	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	5q33.3	LOC101927697, EBF1	rs2963472-A	NR	8E-10				Affymetrix, Illumina [NR] (imputed)	N
1790	chr5	157999021	157999022	rs2963472	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	5q33.3	LOC101927697, EBF1	rs2963472-A	NR	6E-9	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1790	chr5	157999021	157999022	rs2963472	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	5q33.3	LOC101927697, EBF1	rs2963472-A	NR	7E-12				Affymetrix, Illumina [NR] (imputed)	N
1790	chr5	157999021	157999022	rs2963472	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	5q33.3	LOC101927697, EBF1	rs2963472-A	NR	2E-10	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1790	chr5	158000225	158000226	rs2963471	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q33.3	NR	rs2963471-A	0.225004	4E-12				Affymetrix, Illumina [24649327] (imputed)	N
1790	chr5	158001308	158001309	rs2963469	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	5q33.3	NR	rs2963469-?	NR	2E-6	(male)	0.1305	[0.077-0.184] unit decrease	Affymetrix [7794483] (imputed)	N
1790	chr5	158001308	158001309	rs2963469	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	5q33.3	NR	rs2963469-?	NR	2E-10		0.14227	[0.099-0.186] unit decrease	Affymetrix [7794483] (imputed)	N
1790	chr5	158003019	158003020	rs2963468	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	5q33.3		rs2963468-G	NR	3E-9		0.0131	[0.0088-0.0174] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
1790	chr5	158003019	158003020	rs2963468	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	5q33.3	EBF1	rs2963468-A	0.764701	4E-18		0.0196752	[0.015-0.024] unit increase	Affymetrix [NR] (imputed)	N
1790	chr5	158007164	158007165	rs2914228	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	5q33.3	intergenic	rs2914228-T	0.3265	2E-19		0.024	[0.019-0.029] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1790	chr5	158009651	158009651	rs553600342	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	5q33.3	NR	rs553600342-AG	0.231575	9E-13		0.019293424	[0.014-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1790	chr5	158009651	158009651	rs553600342	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	5q33.3	NR	rs553600342-AG	0.231576	5E-14		0.020284515	[0.015-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1790	chr5	158009651	158009651	rs553600342	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	5q33.3		rs553600342-AG	0.23174	3E-12		0.018724917	[0.013-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1790	chr5	158009651	158009651	rs553600342	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	5q33.3		rs553600342-AG	0.231747	2E-14		0.020536212	[0.015-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1790	chr5	158011786	158011787	rs2901008	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	5q33.3	NR	rs2901008-C	0.212041	1E-10		0.014326	[0.01-0.0187] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
1790	chr5	158014484	158014484	rs112965849	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	5q33.3	NR	rs112965849-A	0.787799	3E-31		0.0116243	[0.0096-0.0137] unit increase	Affymetrix [16582909] (imputed)	N
1790	chr5	158014484	158014484	rs112965849	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	5q33.3	NR	rs112965849-A	0.787321	3E-12		0.00905654	[0.0063-0.0119] unit increase	Affymetrix [16582621] (imputed)	N
1790	chr5	158014484	158014484	rs112965849	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	5q33.3	NR	rs112965849-A	0.787799	2E-18		0.00970911	[0.0074-0.012] unit increase	Affymetrix [16582965] (imputed)	N
1790	chr5	158014484	158014484	rs112965849	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	5q33.3	NR	rs112965849-A	0.787321	2E-9		0.00858661	[0.0056-0.0116] unit increase	Affymetrix [16582614] (imputed)	N
1790	chr5	158015902	158015903	rs1122080	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	5q33.3	NA	rs1122080-A	0.2045	2E-9		0.0131	[0.0088-0.0174] unit decrease	NR [~ 27400000] (imputed)	N
1790	chr5	158015902	158015903	rs1122080	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	316,772 European ancestry male individuals	NA	5q33.3	NR	rs1122080-A	0.2045	2E-9		0.0131	[0.0088-0.0174] unit decrease	NR [~ 27400000] (imputed)	N
1790	chr5	158020424	158020425	rs1651274	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	5q33.3	NR	rs1651274-G	NR	4E-11		0.0196	[0.014-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
1790	chr5	158020424	158020425	rs1651274	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	5q33.3	NR	rs1651274-A	NR	9E-6		0.019	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1790	chr5	158020424	158020425	rs1651274	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	5q33.3	NR	rs1651274-A	NR	3E-9		0.023	unit increase	Affymetrix [at least 7091467] (imputed)	N
1790	chr5	158020424	158020425	rs1651274	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	5q33.3	NR	rs1651274-A	0.76	4E-7	(EA)	0.022	unit increase	Affymetrix [at least 7091467] (imputed)	N
1790	chr5	158022040	158022041	rs2434612	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Waist-hip ratio and HDL-C (pairwise)	402,477 European ancestry individuals, 11,333 East Asian, South Asian, Hispanic and African American ancestry individuals	NA	5q33.3	EBF1	rs2434612-A	0.7903	4E-9				Affymetrix, Illumina [2331072] (imputed)	N
1790	chr5	158022040	158022041	rs2434612	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	5q33.3	intergenic	rs2434612-A	0.7005	2E-18		0.0216	[0.017-0.027] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1790	chr5	158022202	158022203	rs2434264	27918534	Chu AY	2016-12-05	Nat Genet	Multiethnic genome-wide meta-analysis of ectopic fat depots identifies loci associated with adipocyte development and differentiation.	Pericardial fat	3,684 European ancestry women, 3,640 European ancestry men, 1,284 African American women, 877 African American men, 746 Hispanic Ancestry women, 699 Hispanic ancestry men, 390 Asian ancestry women, 378 Asian ancestry men,  294 Old Order Amish (founder/genetic isolate) women, 248 Old Order Amish (founder/genetic isolate) men.	NA	5q33.3	EBF1	rs2434264-T	0.61	3E-9		5.93	z-score increase	Affymetrix, Illumina [~ 2600000] (imputed)	N
1790	chr5	158022723	158022724	rs1650527	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	5q33.3	NR	rs1650527-C	0.767899	4E-22		0.0136857	[0.011-0.017] unit increase	Affymetrix [16585854] (imputed)	N
1790	chr5	158022723	158022724	rs1650527	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	5q33.3	NR	rs1650527-C	0.767899	6E-11		0.0106506	[0.0073-0.014] unit increase	Affymetrix [16585866] (imputed)	N
1790	chr5	158026743	158026744	rs890940	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	5q33.3	NR	rs890940-C	0.7887	1E-17		0.0484	[0.037-0.059] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
1790	chr5	158029733	158029734	rs1650505	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	5q33.3	NR	rs1650505-G	0.7722	2E-19		0.0409	[0.032-0.05] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1790	chr5	158029733	158029734	rs1650505	27918534	Chu AY	2016-12-05	Nat Genet	Multiethnic genome-wide meta-analysis of ectopic fat depots identifies loci associated with adipocyte development and differentiation.	Pericardial adipose tissue adjusted for height and weight	3,684 European ancestry women, 3,640 European ancestry men, 1,284 African American women, 877 African American men, 746 Hispanic Ancestry women, 699 Hispanic ancestry men, 390 Asian ancestry women, 378 Asian ancestry men,  294 Old Order Amish (founder/genetic isolate) women, 248 Old Order Amish (founder/genetic isolate) men.	NA	5q33.3	EBF1	rs1650505-A	0.24	1E-9		6.1	z-score decrease	Affymetrix, Illumina [~ 2600000] (imputed)	N
1790	chr5	158029733	158029734	rs1650505	27918534	Chu AY	2016-12-05	Nat Genet	Multiethnic genome-wide meta-analysis of ectopic fat depots identifies loci associated with adipocyte development and differentiation.	Pericardial adipose tissue adjusted for height and weight	3,684 European ancestry women, 3,640 European ancestry men, 1,284 African American women, 877 African American men, 746 Hispanic Ancestry women, 699 Hispanic ancestry men, 390 Asian ancestry women, 378 Asian ancestry men,  294 Old Order Amish (founder/genetic isolate) women, 248 Old Order Amish (founder/genetic isolate) men.	NA	5q33.3	EBF1	rs1650505-A	0.22	7E-6	(EA)	4.5	z-score decrease	Affymetrix, Illumina [~ 2600000] (imputed)	N
1790	chr5	158029733	158029734	rs1650505	27918534	Chu AY	2016-12-05	Nat Genet	Multiethnic genome-wide meta-analysis of ectopic fat depots identifies loci associated with adipocyte development and differentiation.	Pericardial adipose tissue adjusted for height and weight	3,684 European ancestry women, 1,284 African American women, 746 Hispanic Ancestry women, 390 Asian ancestry women, 294 Old Order Amish (founder/genetic isolate) women	NA	5q33.3	EBF1	rs1650505-?	NR	2E-7				Affymetrix, Illumina [~ 2600000] (imputed)	N
1790	chr5	158030812	158030813	rs1650507	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	5q33.3	intergenic	rs1650507-A	0.2217	8E-9		0.02509773	[0.017-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
1790	chr5	158031709	158031710	rs115217366	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Coprobacter secundus abundance in stool	5,959 Finnish ancestry individuals	NA	5q33.3		rs115217366-T	0.0185404	1E-8		0.233129	[0.15-0.31] unit decrease	Illumina [7980478] (imputed)	N
1790	chr5	158064867	158064868	rs146912931	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Chronic sinus infection	5,291 European ancestry cases, 79,622 European ancestry controls	NA	5q33.3	NR	rs146912931-?	NR	5E-6		0.5177	[0.28-0.76] unit increase	Illumina [at least 560000] (imputed)	N
1791	chr5	158086203	158086204	rs113942939	29071344	Zhou H	2017-10-25	JAMA Psychiatry	Genetic Risk Variants Associated With Comorbid Alcohol Dependence and Major Depression.	Major depression and alcohol dependence	3,041 African American individuals, 1,618 European ancestry individuals	1,612 African American individuals, 1,551 European ancestry individuals	5q33.3	intergenic	rs113942939-G	NR	3E-6	(AA)	1.158	unit decrease	Illumina [at least 5086170] (imputed)	N
1791	chr5	158087722	158087729	rs148803029	34130359	Curtis SW	2021-06-15	Genet Epidemiol	FAT4 identified as a potential modifier of orofacial cleft laterality.	Left unilateral cleft lip	68 Asian ancestry cases, 78 European ancestry cases, 70 Hispanic cases, 1,626 controls	NA	5q33.3	NR	rs148803029-?		9E-6		1.84	[1.40-2.41]	Illumina [539473] (imputed)	N
1791	chr5	158089344	158089345	rs114778301	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	5q33.3		rs114778301-?	NR	1E-11				NR [~ 8900000] (imputed)	N
1791	chr5	158099960	158099961	rs5025401	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	5q33.3	NR	rs5025401-A	0.468191	2E-11		0.0211549	[0.015-0.027] unit decrease	NR [19129689] (imputed)	N
1791	chr5	158111072	158111073	rs1421898	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Inflammatory skin disease	2,079 European ancestry atopic dermatitis cases, 4,212 European ancestry psoriasis cases, 11,899 European ancestry controls	NA	5q33.3	EBF1	rs1421898-?	NR	2E-6	(Psoriasis)			Affymetrix, Illumina [~ 5200000]	N
1791	chr5	158167191	158167192	rs7732733	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	5q33.3	EBF1	rs7732733-A	0.7966	5E-10		0.014986587	[0.01-0.02] unit increase	Illumina [9339358] (imputed)	N
1791	chr5	158175668	158175669	rs13170526	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	5q33.3	EBF1	rs13170526-C	0.039	4E-6	(Eotaxin )	0.03	[NR] pg/mL increase	Illumina [899892]	N
1791	chr5	158179151	158179152	rs10476265	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	5q33.3	EBF1	rs10476265-T	0.096349	1E-14		0.029192908	[0.022-0.037] unit increase	Affymetrix [93095623] (imputed)	N
1791	chr5	158191767	158191768	rs11740542	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q33.3	NR	rs11740542-G	0.156552	1E-14				Affymetrix, Illumina [21126107] (imputed)	N
1791	chr5	158196741	158196742	rs6863275	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	5q33.3	EBF1	rs6863275-C	0.083616	1E-9		0.024603156	[0.017-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
1791	chr5	158197468	158197469	rs7709065	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	5q33.3	NR	rs7709065-G	0.179714	1E-16		0.021576	[0.016-0.027] SD unit decrease	Affymetrix, Illumina [50282193] (imputed)	N
1791	chr5	158202919	158202920	rs11745795	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	5q33.3	EBF1	rs11745795-G	0.180653	4E-14		0.0215485	[0.016-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1792	chr5	158204424	158204425	rs1368298	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	5q33.3		rs1368298-G	NR	4E-22		0.0178	[0.014-0.021] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
1792	chr5	158205564	158205565	rs56286460	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	5q33.3		rs56286460-G	0.914	5E-19				Affymetrix [10369434] (imputed)	N
1792	chr5	158220192	158220193	rs31864	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	5q33.3		rs31864-G	NR	8E-9		1.0741138	[1.05-1.1]	Affymetrix [7846216] (imputed)	N
1792	chr5	158220192	158220193	rs31864	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Hypertension	22,566 Japanese ancestry cases, 28,226 Japanese ancestry controls	8,809 East Asian ancestry cases, 13,663 East Asian ancestry controls, 105,253 European ancestry individuals	5q33.3	EBF1	rs31864-A	0.3414	3E-6	(Japanese)	0.0651	[0.038-0.092] unit increase	Illumina [6200000] (imputed)	N
1792	chr5	158220192	158220193	rs31864	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Pulse pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	5q33.3	EBF1	rs31864-A	0.55	6E-11		0.206	[0.15-0.26] unit increase	Affymetrix [~ 9800000] (imputed)	N
1792	chr5	158227897	158227898	rs12332693	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Breast cancer	17,389 European ancestry cases, 240,341 European ancestry controls, 6,325 East Asian ancestry cases, 73,225 East Asian ancestry controls	NA	5q33.3		rs12332693-A	NR	3E-13		0.0734	[0.054-0.093] unit decrease	Affymetrix, Illumina [25794640] (imputed)	N
1792	chr5	158230012	158230013	rs11135046	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Varicose veins	22,037 European ancestry cases, 437,665 European ancestry controls, 474 East Asian ancestry cases, 178,252 East Asian ancestry controls	NA	5q33.3		rs11135046-T	NR	3E-26		0.113	[0.092-0.134] unit decrease	Affymetrix, Illumina [25842955] (imputed)	N
1792	chr5	158230012	158230013	rs11135046	30998689	Shadrina AS	2019-04-18	PLoS Genet	Varicose veins of lower extremities: Insights from the first large-scale genetic study.	Varicose veins	10,861 British ancestry cases, 397,594 British ancestry controls	NA	5q33.3		rs11135046-T	0.542961	3E-19		0.003154	[0.0025-0.0038] unit decrease	Affymetrix [10829469] (imputed)	N
1792	chr5	158230012	158230013	rs11135046	30566020	Fukaya E	2018-12-01	Circulation	Clinical and Genetic Determinants of Varicose Veins.	Varicose veins	9,577 British ancestry cases, 327,959 British ancestry controls	NA	5q33.3	NR	rs11135046-T	0.54	3E-16		0.12	[0.091-0.149] unit decrease	Affymetrix [10972371] (imputed)	N
1792	chr5	158230012	158230013	rs11135046	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	5q33.3	NR	rs11135046-T	0.5529	5E-31	(EA)	0.0717	[0.06-0.084] unit decrease	Illumina [~ 11800000] (imputed)	N
1792	chr5	158242544	158242545	rs13164506	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	5q33.3		rs13164506-A	NR	3E-15		0.0233	[0.018-0.029] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
1792	chr5	158242544	158242545	rs13164506	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	5q33.3	NR	rs13164506-A	NR	7E-15		0.0252	[0.019-0.031] unit increase	Affymetrix [9000000] (imputed)	N
1792	chr5	158242544	158242545	rs13164506	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	5q33.3	EBF1	rs13164506-A	0.169089	2E-10		0.019223036	[0.013-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1792	chr5	158244082	158244083	rs1432679	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	5q33.3		rs1432679-T	NR	5E-37		0.93	[0.92-0.94]	Affymetrix, Illumina [NR] (imputed)	N
1792	chr5	158244082	158244083	rs1432679	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	5q33.3	NR	rs1432679-C	0.446467	5E-8		0.0133517	[0.0084-0.0183] unit increase	Affymetrix [16585745] (imputed)	N
1792	chr5	158244082	158244083	rs1432679	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	5q33.3	EBF1	rs1432679-C	0.43	7E-31	(EA)	1.08	[1.06-1.1] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
1792	chr5	158244082	158244083	rs1432679	29058716	Milne RL	2017-10-23	Nat Genet	Identification of ten variants associated with risk of estrogen-receptor-negative breast cancer.	Breast cancer (estrogen-receptor negative)	14,135 European ancestry cases, 58,126 European ancestry controls	7,333 European ancestry cases, 42,468 European ancestry controls	5q33.3	NR	rs1432679-C	0.43	1E-10		1.08	[1.04-1.11] (Oncoarray)	Illumina [~ 11500000] (imputed)	N
1792	chr5	158244082	158244083	rs1432679	27117709	Couch FJ	2016-04-27	Nat Commun	Identification of four novel susceptibility loci for oestrogen receptor negative breast cancer.	Breast cancer	4,939 European ancestry estrogen receptor-negative cases, 14,352 European ancestry controls	7,333 European ancestry estrogen receptor-negative cases, 7,797 European ancestry BRCA1 mutation carrier cases, 7,455  European ancestry BRCA1 mutation carrier controls, 42,468 European ancestry controls	5q33.3	NR	rs1432679-?	0.44	2E-6		1.04	[1.00-1.08] (BRCA1 carriers)	Illumina [10909381] (imputed)	N
1792	chr5	158244082	158244083	rs1432679	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	46,785 European ancestry cases, 42,892 European ancestry controls	NA	5q33.3	NR	rs1432679-C	0.43	4E-12		1.07	[1.05-1.09]	Affymetrix, Illumina [~ 14000000] (imputed)	N
1792	chr5	158244082	158244083	rs1432679	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	15,748 European ancestry cases, 18,084 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls	5q33.3	NR	rs1432679-C	0.43	4E-16		1.07	[1.05-1.09]	Affymetrix, Illumina [~ 11600000] (imputed)	N
1792	chr5	158244082	158244083	rs1432679	23535733	Garcia-Closas M	2013-04-01	Nat Genet	Genome-wide association studies identify four ER negative-specific breast cancer risk loci.	Breast cancer	4,193 European ancestry cases, 35,194 European ancestry controls	6,514 European ancestry cases, 41,455 European ancestry controls	5q33.3	EBF1	rs1432679-C	0.435	7E-6		1.08	[1.04-1.11]	Illumina [NR]	N
1792	chr5	158244082	158244083	rs1432679	23535729	Michailidou K	2013-04-01	Nat Genet	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	5q33.3	EBF1	rs1432679-C	0.43	2E-14		1.07	[1.05-1.09]	Affymetrix, Illumina [~ 2600000] (imputed)	N
1792	chr5	158245633	158245634	rs7710925	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	5q33.3	NR	rs7710925-A	0.402605	4E-26		0.0416945	[0.034-0.049] unit decrease	NR [19129689] (imputed)	N
1792	chr5	158246649	158246650	rs7720275	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	5q33.3	EBF1	rs7720275-C	0.169521	9E-13		0.02131799	[0.015-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1792	chr5	158246649	158246650	rs7720275	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	5q33.3	EBF1	rs7720275-C	0.16906	2E-16		0.02466122	[0.019-0.031] unit increase	Affymetrix [93095623] (imputed)	N
1792	chr5	158246784	158246785	rs4704780	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	5q33.3	NR	rs4704780-A	0.913731	7E-11		0.0227696	[0.016-0.03] unit decrease	NR [NR]	N
1792	chr5	158247377	158247378	rs4704963	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	5q33.3		rs4704963-C	NR	8E-9		0.0244	[0.016-0.033] unit increase	Affymetrix, Illumina [20529698] (imputed)	N
1792	chr5	158247377	158247378	rs4704963	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	5q33.3	EBF1	rs4704963-C	0.07658	6E-18		0.036078785	[0.028-0.044] unit decrease	Affymetrix [93095623] (imputed)	N
1792	chr5	158252437	158252438	rs17056278	25271088	Singh A	2014-10-01	Eur J Hum Genet	Gene by stress genome-wide interaction analysis and path analysis identify EBF1 as a cardiovascular and metabolic risk gene.	Hip circumference (psychosocial stress interaction)	2,460 European ancestry individuals, 548 Chinese ancestry individuals,   1,547 African American individuals, 1,250 Hispanic individuals	3,157 European ancestry individuals		EBF1	rs17056278-C	0.07	3E-8	(EA)			Affymetrix [528298]	N
1792	chr5	158252500	158252500	rs33959428	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	5q33.3	NR	rs33959428-G	0.327589	8E-9		0.0178627	[0.012-0.024] unit increase	Affymetrix [16580851] (imputed)	N
1792	chr5	158253682	158253683	rs58889466	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5q33.3	EBF1	rs58889466-C	0.079	6E-12	(Immunoglobulin lambda-like polypeptide 1, IGLL1.6485.59.3)	0.31	[0.21-0.41] unit decrease	Affymetrix [10572788] (imputed)	N
1792	chr5	158256117	158256118	rs11954193	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Breast cancer	10,682 White British ancestry cases, 138,504 White British ancestry controls	NA	5q33.3		rs11954193-?	NR	1E-9		1.09165	[1.06-1.12]	NR [682398]	N
1792	chr5	158261162	158261163	rs17715065	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	5q33.3		rs17715065-T	NR	2E-17		0.0161	[0.012-0.02] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1792	chr5	158261162	158261163	rs17715065	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Breast cancer	17,881 European ancestry cases, 410,350 European ancestry controls	NA	5q33.3		rs17715065-C	NR	1E-11		1.078	NR	Affymetrix [7846216] (imputed)	N
1792	chr5	158263143	158263144	rs6885822	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	5q33.3	EBF1	rs6885822-G	0.840355	2E-26		0.0275821	[0.022-0.033] unit increase	NR [13737936] (imputed)	N
1792	chr5	158263143	158263144	rs6885822	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	5q33.3		rs6885822-?	NR	1E-20				NR [~ 8900000] (imputed)	N
1792	chr5	158263143	158263144	rs6885822	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	5q33.3		rs6885822-?	NR	3E-20		0.0256839	[0.02-0.031] unit increase	Affymetrix [20259828] (imputed)	N
1792	chr5	158263479	158263480	rs6876405	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	5q33.3	EBF1	rs6876405-T	0.236	5E-12		0.0096	[0.0069-0.0123] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
1792	chr5	158265307	158265308	rs112824187	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	5q33.3	EBF1	rs112824187-A	0.076647	6E-26		0.043885477	[0.036-0.052] unit decrease	Affymetrix [93095623] (imputed)	N
1792	chr5	158267973	158267974	rs4594837	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	5q33.3		rs4594837-?	NR	3E-17				NR [~ 8900000] (imputed)	N
1792	chr5	158270224	158270225	rs7707918	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	5q33.3	EBF1	rs7707918-C	0.6171	1E-16		0.212	[0.16-0.26] mmHg decrease	Affymetrix [NR] (imputed)	N
1792	chr5	158271679	158271680	rs17056301	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	5q33.3		rs17056301-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1792	chr5	158272082	158272083	rs10077799	26584805	Dorajoo R	2015-11-19	Genes Nutr	A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.	Delta-5 desaturase activity	717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls	NA	5q33.3	NR	rs10077799-T	0.9256	6E-6		0.1202	[0.068-0.172] unit decrease	Illumina [up to 1980188] (imputed)	N
1792	chr5	158274490	158274491	rs17643057	28272467	Heilmann-Heimbach S	2017-03-08	Nat Commun	Meta-analysis identifies novel risk loci and yields systematic insights into the biology of male-pattern baldness.	Male-pattern baldness	10,846 European ancestry cases, 11,672 European ancestry controls	NA	5q33.3		rs17643057-G	0.4	3E-25		0.21	[0.17-0.25] unit decrease	Affymetrix, Illumina [8004650] (imputed)	N
1792	chr5	158276609	158276610	rs80330977	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	IgD+ CD38+ B cell Absolute Count	3,656 Sardinian (founder/genetic isolate) ancestry individuals	NA	5q33.3		rs80330977-A	0.08068	6E-9		0.2576	[0.17-0.34] unit decrease	Illumina [18238287] (imputed)	N
1792	chr5	158284984	158284985	rs17715887	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-2 levels	3,475 Finnish ancestry individuals	NA	5q33.3	NR	rs17715887-C		9E-6		0.1674	[0.094-0.241] SD units decrease	NR [10700000] (imputed)	N
1792	chr5	158300797	158300798	rs31196	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	5q33.3	EBF1	rs31196-C	0.428005	2E-9		0.01355317	[0.0092-0.0179] unit decrease	Affymetrix [93095623] (imputed)	N
1792	chr5	158300797	158300798	rs31196	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	5q33.3	NR	rs31196-A	0.572304	3E-10		0.011946	[0.0082-0.0156] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1792	chr5	158305073	158305074	rs77239429	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		5q33.3	EBF1	rs77239429-T	NR	1E-13		0.0690715	NR unit increase	NR [NR] (imputed)	N
1792	chr5	158307316	158307317	rs17652779	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	5q33.3		rs17652779-A	NR	5E-13		0.0224	[0.016-0.028] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
1792	chr5	158310630	158310631	rs929626	28630421	Li D	2017-06-19	Sci Rep	A genome-wide association study of anorexia nervosa suggests a risk locus implicated in dysregulated leptin signaling.	Anorexia nervosa (excluding migration to or from binge-eating disorder or bulimia nervosa)	692 European ancestry female cases and 3,570 European ancestry female controls	Cases and controls (see Boraska et al, 2014)	5q33.3	EBF1	rs929626-?		2E-7		1.4277556	[1.25-1.63] (discovery)	Illumina [507999]	N
1792	chr5	158310630	158310631	rs929626	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		5q33.3	NR	rs929626-G	NR	4E-40		0.08	NR unit decrease	NR [NR] (imputed)	N
1792	chr5	158311642	158311643	rs17543668	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		5q33.3	EBF1	rs17543668-A	NR	1E-9		0.0621469	NR unit increase	NR [NR] (imputed)	N
1792	chr5	158317601	158317602	rs75512885	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Transitional B cell Absolute Count	3,656 Sardinian (founder/genetic isolate) ancestry individuals	NA	5q33.3		rs75512885-A	0.07766	9E-9		0.2625	[0.17-0.35] unit decrease	Illumina [18238287] (imputed)	N
1792	chr5	158320876	158320877	rs1422798	29146897	Pirastu N	2017-11-17	Nat Commun	GWAS for male-pattern baldness identifies 71 susceptibility loci explaining 38% of the risk.	Male-pattern baldness	25,662 British ancestry cases, 17,928 British ancestry controls	13,367 European ancestry cases, 11,851 European ancestry controls, 3,436 cases, 2,435 controls	5q33.3	EBF1, UBLCP1	rs1422798-C	NR	2E-44		0.20288	[0.17-0.23] unit decrease	Affymetrix [27512692] (imputed)	N
1792	chr5	158320876	158320877	rs1422798	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		5q33.3	EBF1	rs1422798-G	NR	3E-46		0.0912062	NR unit decrease	NR [NR] (imputed)	N
1792	chr5	158321402	158321402	rs368910700	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	5q33.3	intergenic	rs368910700-GTAAA	0.6287	2E-14		0.2629	[0.2-0.33] mmHg decrease	Affymetrix [NR] (imputed)	N
1792	chr5	158328180	158328181	rs17658268	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	133,321 East Asian ancestry individuals	NA	5q33.3		rs17658268-C	0.147674	5E-8		0.0292557	[0.019-0.04] unit decrease	Illumina [13477433] (imputed)	N
1792	chr5	158332379	158332380	rs17543752	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	5q33.3	NR	rs17543752-C	0.3836	2E-19	(EA)	0.0574	[0.045-0.07] unit decrease	Illumina [~ 11800000] (imputed)	N
1793	chr5	158338971	158338972	rs17626412	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		5q33.3	EBF1	rs17626412-A	NR	4E-15		0.113056	NR unit decrease	NR [NR] (imputed)	N
1793	chr5	158343968	158343969	rs7736883	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	5q33.3		rs7736883-?	NR	1E-158				NR [~ 8900000] (imputed)	N
1793	chr5	158343968	158343969	rs7736883	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	5q33.3	NR	rs7736883-G	0.386345	4E-267		0.138399	[0.13-0.15] unit decrease	NR [19129689] (imputed)	N
1793	chr5	158345922	158345923	rs6869051	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	5q33.3		rs6869051-G	NR	3E-8		0.0153	[0.01-0.021] unit decrease	Affymetrix, Illumina [20535842] (imputed)	N
1793	chr5	158347161	158347163	rs139876400	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	5q33.3	EBF1	rs139876400-A	0.0957	1E-10		0.04014194	[0.028-0.052] unit increase	Affymetrix [~ 2500000] (imputed)	N
1793	chr5	158347770	158347771	rs77695390	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Non-albumin protein levels	98,538 Japanese ancestry individuals	NA	5q33.3	EBF1	rs77695390-?	NR	2E-9		0.04124	[0.028-0.055] unit decrease novel	Illumina [6108953] (imputed)	N
1793	chr5	158364448	158364449	rs72643433	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	5q33.3		rs72643433-A	0.24	3E-33		12.01	z score increase	Affymetrix [9061022] (imputed)	N
1793	chr5	158364448	158364449	rs72643433	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	5q33.3		rs72643433-A	0.24	5E-13		7.22	z score increase	Affymetrix [9061022] (imputed)	N
1793	chr5	158364448	158364449	rs72643433	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	5q33.3	NR	rs72643433-A	0.2508	6E-11				NR [9056863] (imputed)	N
1793	chr5	158364448	158364449	rs72643433	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	5q33.3	EBF1	rs72643433-G	0.752002	9E-13		0.0157502	[0.011-0.02] unit increase	NR [13737936] (imputed)	N
1793	chr5	158364448	158364449	rs72643433	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	5q33.3		rs72643433-?	NR	1E-20				NR [~ 8900000] (imputed)	N
1793	chr5	158367248	158367249	rs62385385	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	5q33.3	EBF1	rs62385385-A	0.3862	2E-34		0.2177	[0.18-0.25] unit increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1793	chr5	158367248	158367249	rs62385385	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		5q33.3	NR	rs62385385-A	NR	1E-45		0.09	NR unit decrease	NR [NR] (imputed)	N
1793	chr5	158367248	158367249	rs62385385	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Male-pattern baldness	9,009 European ancestry cases, 8,491 European ancestry controls	NA	5q33.3	EBF1	rs62385385-?	NR	7E-22		1.247	[1.192-1.304]	Illumina [13436641] (imputed)	N
1793	chr5	158369471	158369472	rs4921269	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FVC)	48,943 European ancestry individuals.	57,176 European ancestry individuals, 38,199 individuals.	5q33.3	NR	rs4921269-C	0.6124	2E-6		0.019	[0.011-0.027] unit decrease	Affymetrix [27624732] (imputed)	N
1793	chr5	158379841	158379842	rs148992089	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	5q33.3	EBF1	rs148992089-T	0.01	8E-7	(EA)	0.7506	[0.46-1.04] unit increase	Illumina [~ 9000000] (imputed)	N
1793	chr5	158381511	158381512	rs1081073	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		5q33.3	NR	rs1081073-A	NR	4E-26		0.07	NR unit decrease	NR [NR] (imputed)	N
1793	chr5	158396061	158396062	rs7380908	35079123	Chambers T	2022-01-25	Mol Psychiatry	Genetic common variants associated with cerebellar volume and their overlap with mental disorders: a study on 33,265 individuals from the UK-Biobank.	Total cerebellar volume (excluding Crus I vermis)	33,265 European ancestry individuals	NA	5q33.3		rs7380908-A	NR	3E-9		0.0326	[0.022-0.043] unit decrease	Affymetrix [6193476] (imputed)	N
1793	chr5	158403683	158403684	rs4401606	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	5q33.3		rs4401606-?	NR	7E-9				NR [~ 8900000] (imputed)	N
1793	chr5	158404128	158404129	rs2161356	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	5q33.3	EBF1	rs2161356-G	NR	3E-8		0.0182	[0.012-0.025] unit decrease	Affymetrix [321114] (imputed)	N
1793	chr5	158406687	158406688	rs142047197	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	5q33.3		rs142047197-G	NR	5E-12		0.0118	[0.0085-0.0151] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1793	chr5	158410177	158410178	rs12153596	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	5q33.3	EBF1	rs12153596-C	0.612618	3E-7		0.016585	[0.01-0.023] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
1793	chr5	158410177	158410178	rs12153596	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	5q33.3	EBF1	rs12153596-C	0.618925	8E-9		0.01533	[0.01-0.021] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1793	chr5	158410177	158410178	rs12153596	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5q33.3		rs12153596-?	NR	4E-16				NR [~ 8900000] (imputed)	N
1793	chr5	158417224	158417225	rs149148360	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	225,112 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	445,360 individuals	5q33.3	EBF1	rs149148360-T	0.0023	5E-9		5.633	[3.75-7.52] mmHg increase	Affymetrix [NR] (imputed)	N
1793	chr5	158424390	158424391	rs10040979	23648065	Low SK	2013-05-04	Cancer Sci	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (all anthracycline-based drugs)	184 Japanese ancestry cases, 459 Japanese ancestry controls	NA	5q33.3	EBF1	rs10040979-G	0.618	5E-7	(Recessive model)	1.452	[1.12-1.883]	Illumina [733202]	N
1793	chr5	158433562	158433563	rs77581390	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	5q33.3	NR	rs77581390-G	0.0675944	1E-9		0.08492784	[0.057-0.112] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1793	chr5	158435460	158435461	rs11288072	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	5q33.3	NR	rs11288072-C	0.3116	3E-13	(EA)	0.0501	[0.037-0.064] unit decrease	Illumina [~ 11800000] (imputed)	N
1793	chr5	158439164	158439165	rs56356600	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	5q33.3	EBF1	rs56356600-T	0.08296	1E-9		0.024582943	[0.017-0.033] unit increase	Affymetrix [93095623] (imputed)	N
1793	chr5	158439164	158439165	rs56356600	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	5q33.3	EBF1	rs56356600-T	0.0839	4E-9		0.038255	[0.025-0.051] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1793	chr5	158441674	158441675	rs6862399	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	5q33.3		rs6862399-T	0.3	4E-9		5.87	z score increase	Affymetrix [9061022] (imputed)	N
1793	chr5	158441674	158441675	rs6862399	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	5q33.3	NR	rs6862399-T	0.2778	3E-9				NR [9056863] (imputed)	N
1793	chr5	158444273	158444274	rs36071027	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	5q33.3	EBF1	rs36071027-T	0.357521	7E-9		0.036414642	[0.024-0.049] unit decrease	Affymetrix [7288503] (imputed)	N
1793	chr5	158444273	158444274	rs36071027	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	5q33.3		rs36071027-?	NR	8E-11				NR [~ 8900000] (imputed)	N
1793	chr5	158444273	158444274	rs36071027	26343869	Xie G	2015-09-05	Atherosclerosis	Genome-wide association study on progression of carotid artery intima media thickness over 10 years in a Chinese cohort.	Carotid intima media thickness	810 Chinese ancestry individuals	NA	5q33.3	EBF1	rs36071027-?	NR	3E-9	(Multiple-adjusted)			Illumina [32817]	N
1793	chr5	158448400	158448401	rs888987	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	5q33.3		rs888987-?	NR	6E-8				NR [~ 8900000] (imputed)	N
1793	chr5	158448400	158448401	rs888987	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	5q33.3		rs888987-?	NR	3E-23				NR [~ 8900000] (imputed)	N
1793	chr5	158448400	158448401	rs888987	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Diastolic blood pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	5q33.3	EBF1	rs888987-C	0.37	4E-8		0.16	[0.1-0.22] unit increase	Affymetrix [~ 9800000] (imputed)	N
1793	chr5	158460211	158460212	rs7734385	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	5q33.3		rs7734385-A	NR	2E-13		0.0146	[0.011-0.019] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
1793	chr5	158460211	158460212	rs7734385	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	5q33.3	NR	rs7734385-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1793	chr5	158460211	158460212	rs7734385	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	5q33.3	NA	rs7734385-A	0.4449	6E-10		0.0101	[0.007-0.0132] unit decrease	NR [~ 27400000] (imputed)	N
1793	chr5	158462917	158462918	rs1363561	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	5q33.3		rs1363561-G	NR	8E-12		0.014	[0.01-0.018] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1793	chr5	158465101	158465102	rs62385430	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	5q33.3	NR	rs62385430-?	NR	6E-9				Affymetrix [~ 8270000] (imputed)	N
1794	chr5	158473366	158473367	rs17717876	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	5q33.3	EBF1	rs17717876-T	0.043	1E-6		0.138	NR unit decrease	Illumina [NR] (imputed)	N
1794	chr5	158476708	158476709	rs17645325	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	5q33.3		rs17645325-C	NR	1E-10		0.0224	[0.016-0.029] unit decrease	Affymetrix, Illumina [20538307] (imputed)	N
1794	chr5	158476708	158476709	rs17645325	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	5q33.3	NR	rs17645325-C	NR	5E-12		0.025	[0.018-0.032] unit decrease	Affymetrix [9000000] (imputed)	N
1794	chr5	158476708	158476709	rs17645325	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	5q33.3	NR	rs17645325-C	0.123104	2E-10		0.017842	[0.012-0.023] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
1794	chr5	158488325	158488326	rs17718288	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		5q33.3	EBF1	rs17718288-C	NR	6E-10		0.0384277	NR unit increase	NR [NR] (imputed)	N
1794	chr5	158488741	158488742	rs35297613	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	5q33.3	NR	rs35297613-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1794	chr5	158489314	158489315	rs7711823	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	5q33.3	EBF1	rs7711823-A	0.637547	9E-9		0.00838771	[0.0055-0.0113] unit increase	Affymetrix [12370749]	N
1794	chr5	158497638	158497639	rs62385438	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	5q33.3	EBF1	rs62385438-?		9E-18				Affymetrix, Illumina [NR] (imputed)	N
1794	chr5	158513545	158513546	rs6898290	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	5q33.3		rs6898290-C	NR	5E-18		0.0176	[0.014-0.022] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
1794	chr5	158513545	158513546	rs6898290	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	5q33.3	EBF1	rs6898290-T	0.5719	2E-16		0.00201993	[0.0016-0.0025] unit decrease	Affymetrix [13995440] (imputed)	N
1794	chr5	158513545	158513546	rs6898290	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	5q33.3	EBF1	rs6898290-C	0.43	2E-8		5.63	z-score increase	Affymetrix [4311822] (imputed)	N
1794	chr5	158522576	158522577	rs12659540	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5q33.3		rs12659540-?	NR	4E-13				NR [~ 8900000] (imputed)	N
1794	chr5	158545463	158545464	rs4921164	26528553	Davenport ER	2015-11-03	PLoS One	Genome-Wide Association Studies of the Human Gut Microbiota.	Gut microbiome composition (winter)	93 Hutterite individuals	NA	5q33.3	NR	rs4921164-?		4E-6	(family_Succinivibrionaceae)	0.7491162	[0.45-1.05] unit decrease	Affymetrix [211319]	N
1794	chr5	158568395	158568396	rs139824696	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	5q33.3	NR	rs139824696-C	0.1183	4E-6	(EA)	0.0448	[0.026-0.064] unit increase	Illumina [~ 11800000] (imputed)	N
1794	chr5	158593372	158593373	rs7718670	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	5q33.3		rs7718670-T	0.752	2E-9				Affymetrix [10369434] (imputed)	N
1795	chr5	158599357	158599358	rs10075570	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	5q33.3	RNF145	rs10075570-A	0.2503	4E-11		0.0278159	[0.02-0.036] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1795	chr5	158603570	158603571	rs1473247	25854761	Zuo X	2015-04-09	Nat Commun	Whole-exome SNP array identifies 15 new susceptibility loci for psoriasis.	Psoriasis	11,245 Han Chinese ancestry cases, 11,177 Han Chinese ancestry controls	6,369 Han Chinese ancestry cases, 13,969 Han Chinese ancestry controls	5q33.3	RNF145, IL12B	rs1473247-?		6E-11		1.14	[1.10-1.19]	Illumina [87827]	N
1795	chr5	158603570	158603571	rs1473247	19820697	Soranzo N	2009-10-11	Nat Genet	A genome-wide meta-analysis identifies 22 loci associated with eight hematological parameters in the HaemGen consortium.	Mean platelet volume	4,627 European ancestry individuals	9,316 European ancestry individuals	5q33.3	NR	rs1473247-C	NR	3E-7		0.01	[0.004-0.012] fl decrease	Affymetrix, Illumina [~ 2110000] (imputed)	N
1795	chr5	158604962	158604963	rs10076782	22139419	Gieger C	2011-11-30	Nature	New gene functions in megakaryopoiesis and platelet formation.	Mean platelet volume	13,106 European ancestry individuals, 1,652 Val Borbera (founder/genetic isolate) individuals, 593 Carlantino (founder/genetic isolate) individuals, 1,146 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,213 South Tyrolean (founder/genetic isolate) individuals, 890 Sorbian (founder/genetic isolate) individuals	Up to 16,960 European ancestry individuals, 855 Cliento (founder/genetic isolate) individuals, 1,023 Talana (founder/genetic isolate) individuals	5q33.3	RNF145	rs10076782-A	NR	4E-8		0.007	[0.005-0.009] ln(fl) increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1795	chr5	158614044	158614045	rs62378712	32641083	Hillary RF	2020-07-08	Genome Med	Multi-method genome- and epigenome-wide studies of inflammatory protein levels in healthy older adults.	Interleukin-12 subunit B levels	982 Scottish ancestry individuals	NA	5q33.3	NR	rs62378712-C	0.25026	3E-10		0.34073	[0.23-0.45] unit decrease	Illumina [7903493] (imputed)	N
1795	chr5	158622531	158622532	rs55801554	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	5q33.3	NR	rs55801554-A	0.24861	1E-34		0.026052	[0.022-0.03] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1795	chr5	158622531	158622532	rs55801554	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	5q33.3	RNF145	rs55801554-C	0.752647	4E-10		0.0138395	[0.0095-0.0182] unit decrease	Affymetrix [NR] (imputed)	N
1795	chr5	158622531	158622532	rs55801554	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	5q33.3	RNF145	rs55801554-C	0.752711	2E-9		0.0137178	[0.0093-0.0182] unit decrease	Affymetrix [NR] (imputed)	N
1795	chr5	158622531	158622532	rs55801554	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	5q33.3	RNF145	rs55801554-A	0.2451	6E-58		0.06764201	[0.059-0.076] unit increase	Affymetrix [~ 2500000] (imputed)	N
1795	chr5	158635101	158635102	rs6556405	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	5q33.3		rs6556405-T	0.75	6E-24				Affymetrix [10369434] (imputed)	N
1795	chr5	158635101	158635102	rs6556405	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	5q33.3	RNF145	rs6556405-C	0.249786	6E-25		0.026879268	[0.022-0.032] unit increase	Affymetrix [93095623] (imputed)	N
1795	chr5	158635101	158635102	rs6556405	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	5q33.3	RNF145	rs6556405-C	0.249755	1E-24		0.026724959	[0.022-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
1795	chr5	158635101	158635102	rs6556405	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	5q33.3	RNF145	rs6556405-C	0.249783	2E-135		0.06430607	[0.059-0.069] unit increase	Affymetrix [93095623] (imputed)	N
1795	chr5	158635101	158635102	rs6556405	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q33.3	NR	rs6556405-C	0.305473	5E-39				Affymetrix, Illumina [24588908] (imputed)	N
1795	chr5	158635101	158635102	rs6556405	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q33.3	NR	rs6556405-T	0.738917	2E-194				Affymetrix, Illumina [17210439] (imputed)	N
1795	chr5	158635101	158635102	rs6556405	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	5q33.3	NR	rs6556405-T	0.749048	1E-191		0.065207	[0.061-0.07] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
1795	chr5	158652394	158652395	rs2901184	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	5q33.3	CTB-11I22.1	rs2901184-A	0.2479	6E-19		0.03717163	[0.029-0.045] unit increase	Affymetrix [~ 2500000] (imputed)	N
1795	chr5	158658011	158658012	rs10515778	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Inflammatory skin disease	2,079 European ancestry atopic dermatitis cases, 4,212 European ancestry psoriasis cases, 11,899 European ancestry controls	NA	5q33.3	CTB-11I22.1	rs10515778-?	NR	2E-14	(Psoriasis)	1.29	[1.21-1.38]	Affymetrix, Illumina [~ 5200000]	N
1795	chr5	158687280	158687281	rs11135056	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Inflammatory skin disease	2,079 European ancestry atopic dermatitis cases, 4,212 European ancestry psoriasis cases, 11,899 European ancestry controls	NA	5q33.3	UBLCP1	rs11135056-?	NR	1E-25	(Psoriasis)	1.45	[1.35-1.56]	Affymetrix, Illumina [~ 5200000]	N
1795	chr5	158688662	158688663	rs34411452	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	5q33.3	NR	rs34411452-T	NR	4E-6		1.06	[NR]	Illumina [7158791] (imputed)	N
1795	chr5	158690950	158690951	rs4921437	26942285	Sobota RS	2016-03-01	Am J Hum Genet	A Locus at 5q33.3 Confers Resistance to Tuberculosis in Highly Susceptible Individuals.	Tuberculosis susceptibility in HIV infection	267 Sub-Saharan African cases, 314 Sub-Saharan African controls	NA	5q33.3	UBLCP1, IL12B	rs4921437-T	0.209	2E-8		0.374	[0.266-0.528]	Illumina [NR] (imputed)	N
1795	chr5	158717788	158717789	rs2082412	26626624	Stuart PE	2015-11-28	Am J Hum Genet	Genome-wide Association Analysis of Psoriatic Arthritis and Cutaneous Psoriasis Reveals Differences in Their Genetic Architecture.	Cutaneous psoriasis	1,363 European ancestry cases, 4,934 European ancestry controls	up to 2,969 European ancestry cases, up to European ancestry 14,384 controls	5q33.3	IL12B	rs2082412-G	NR	1E-13		1.35	NR	Illumina [11532644] (imputed)	N
1795	chr5	158717788	158717789	rs2082412	19169254	Nair RP	2009-01-25	Nat Genet	Genome-wide scan reveals association of psoriasis with IL-23 and NF-kappaB pathways.	Psoriasis	1,359 European ancestry cases, 1,400 European ancestry controls	5,048 European ancestry cases, 5,041 European ancestry controls	5q33.3	IL12B	rs2082412-G	0.80	2E-28		1.44	[NR]	Perlegen [~ 2500000] (imputed)	N
1795	chr5	158726534	158726535	rs73307775	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque score in type 2 diabetes	691 African American individuals	205 African American individuals	5q33.3	intergenic	rs73307775-?	NR	4E-6		0.998	[0.46-1.54] unit decrease	Illumina [at least 13000000] (imputed)	N
1796	chr5	158731547	158731548	rs1549922	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Autoimmune traits	approximately 459,000 European ancestry individuals	NA	5q33.3		rs1549922-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1796	chr5	158736991	158736992	rs6859018	27412988	Tise CG	2016-07-13	G3 (Bethesda)	From Genotype to Phenotype: Nonsense Variants in SLC13A1 Are Associated with Decreased Serum Sulfate and Increased Serum Aminotransferases.	Serum sulfate level	917 Old Order Amish (founder/genetic isolate) individuals	NA	5q33.3	UBLCP1, IL12B	rs6859018-?	NR	3E-6		0.021	NR unit increase	Affymetrix [NR]	N
1796	chr5	158743107	158743108	rs3213120	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL12B	5,363 Icelandic ancestry individuals	NA	5q33.3		rs3213120-T	0.02422	2E-91		1.20347	[1.09-1.32] unit decrease	Illumina [7506463] (imputed)	N
1796	chr5	158749087	158749088	rs2853694	25903422	Yin X	2015-04-23	Nat Commun	Genome-wide meta-analysis identifies multiple novel associations and ethnic heterogeneity of psoriasis susceptibility.	Psoriasis	3,496 European ancestry cases, 5,186 European ancestry controls, 1,588 Chinese ancestry cases, 3,546 Chinese ancestry controls	5,134 European ancestry cases, 5,633 European ancestry controls, 5,151 Chinese ancestry cases, 5,152 Chinese ancestry controls	5q33.3	IL12B	rs2853694-G	0.495	5E-10	(conditional on rs7709212, rs4921493)	1.23	[1.16-1.29]	Illumina [up to 4778154] (imputed)	N
1796	chr5	158749087	158749088	rs2853694	25903422	Yin X	2015-04-23	Nat Commun	Genome-wide meta-analysis identifies multiple novel associations and ethnic heterogeneity of psoriasis susceptibility.	Psoriasis	3,496 European ancestry cases, 5,186 European ancestry controls, 1,588 Chinese ancestry cases, 3,546 Chinese ancestry controls	5,134 European ancestry cases, 5,633 European ancestry controls, 5,151 Chinese ancestry cases, 5,152 Chinese ancestry controls	5q33.3	IL12B	rs2853694-G	0.495	2E-8	(EA, conditional on rs7709212, rs4921493)	1.25	[1.17-1.32]	Illumina [up to 4778154] (imputed)	N
1796	chr5	158750768	158750769	rs3213094	20953190	Strange A	2010-10-17	Nat Genet	A genome-wide association study identifies new psoriasis susceptibility loci and an interaction between HLA-C and ERAP1.	Psoriasis	2,178 European ancestry cases, 5,175 European ancestry controls	3,174 European ancestry cases, 5,464 European ancestry controls	5q33.3	IL12B	rs3213094-?	NR	5E-11		1.39	[1.26-1.53]	Illumina [535475]	N
1796	chr5	158750768	158750769	rs3213094	19169255	Zhang XJ	2009-01-25	Nat Genet	Psoriasis genome-wide association study identifies susceptibility variants within LCE gene cluster at 1q21.	Psoriasis	1,139 Han Chinese ancestry cases, 1,132 Han Chinese ancestry controls	5,721 Chinese ancestry cases, 7,340 Chinese ancestry controls	5q33.3	IL12B	rs3213094-A	0.45	3E-26		1.28	[1.23-1.35]	Illumina [494902]	N
1796	chr5	158759899	158759900	rs2546890	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	8,021 European ancestry cases, 16,489 European ancestry controls, 2,495 East Asian ancestry cases, 4,283 East Asian ancestry controls	NA	5q33.3		rs2546890-A	NR	5E-12		0.132819	[0.095-0.17] unit increase	NR [2787054] (imputed)	N
1796	chr5	158759899	158759900	rs2546890	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	8,021 European ancestry cases, 16,489 European ancestry controls	NA	5q33.3		rs2546890-G	NR	3E-11		0.144233	[0.1-0.19] unit decrease	NR [5054572] (imputed)	N
1796	chr5	158759899	158759900	rs2546890	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	5q33.3	LOC285626	rs2546890-A	NR	5E-19		1.0878	NR	Affymetrix, Illumina [8278136] (imputed)	N
1796	chr5	158759899	158759900	rs2546890	26394269	Cordell HJ	2015-09-22	Nat Commun	International genome-wide meta-analysis identifies new primary biliary cirrhosis risk loci and targetable pathogenic pathways.	Primary biliary cholangitis	2,764 European ancestry cases, 10,475 European ancestry controls	3,716 European ancestry cases,  4,261 European ancestry controls	5q33.3	RNF145, UBLCP1, RNU4ATAC2P, IL12B, LOC285626	rs2546890-A		1E-10		1.1494253	[1.08-1.22]	Illumina [1143634] (imputed)	N
1796	chr5	158759899	158759900	rs2546890	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Inflammatory skin disease	2,079 European ancestry atopic dermatitis cases, 4,212 European ancestry psoriasis cases, 11,899 European ancestry controls	NA	5q33.3	AC008697.1	rs2546890-?	NR	3E-35	(Psoriasis)	1.39	[1.32-1.47]	Affymetrix, Illumina [~ 5200000]	N
1796	chr5	158759899	158759900	rs2546890	22190364	Patsopoulos NA	2011-12-01	Ann Neurol	Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.	Multiple sclerosis	5,545 European ancestry cases, 12,153 European ancestry controls	NA	5q33.3	IL12B	rs2546890-A	0.52	8E-8		1.16	[NR]	Affymetrix, Illumina [2529394]	N
1796	chr5	158759899	158759900	rs2546890	21833088	Sawcer S	2011-08-11	Nature	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	5q33.3	IL12B	rs2546890-A	NR	1E-11		1.11	[1.1-1.13]	Illumina [465434]	N
1796	chr5	158759899	158759900	rs2546890	20953188	Ellinghaus E	2010-10-17	Nat Genet	Genome-wide association study identifies a psoriasis susceptibility locus at TRAF3IP2.	Psoriasis	472 European ancestry cases, 1,146 European ancestry controls	2,668, European ancestry cases, 762 French Canadian founder population cases, 2,585 cases, 3,485 European ancestry controls, 994 French Canadian founder population controls, 2,412 controls	5q33.3	IL12B	rs2546890-A	0.56	1E-20		1.54	[1.32-1.79]	Illumina [2339118] (imputed)	N
1796	chr5	158764176	158764177	rs7709212	26626624	Stuart PE	2015-11-28	Am J Hum Genet	Genome-wide Association Analysis of Psoriatic Arthritis and Cutaneous Psoriasis Reveals Differences in Their Genetic Architecture.	Psoriasis vulgaris	4,007 European ancestry cases, 4,934 European ancestry controls	up to 9,075 European ancestry cases, up to European ancestry 12,726 controls	5q33.3	IL12B	rs7709212-T	NR	2E-42		1.364	NR	Illumina [up to 11532644] (imputed)	N
1796	chr5	158764176	158764177	rs7709212	25903422	Yin X	2015-04-23	Nat Commun	Genome-wide meta-analysis identifies multiple novel associations and ethnic heterogeneity of psoriasis susceptibility.	Psoriasis	3,496 European ancestry cases, 5,186 European ancestry controls, 1,588 Chinese ancestry cases, 3,546 Chinese ancestry controls	5,134 European ancestry cases, 5,633 European ancestry controls, 5,151 Chinese ancestry cases, 5,152 Chinese ancestry controls	5q33.3	IL12B	rs7709212-T	0.657	3E-20	(EA)	1.37	[1.28-1.47]	Illumina [up to 4778154] (imputed)	N
1796	chr5	158764176	158764177	rs7709212	25903422	Yin X	2015-04-23	Nat Commun	Genome-wide meta-analysis identifies multiple novel associations and ethnic heterogeneity of psoriasis susceptibility.	Psoriasis	3,496 European ancestry cases, 5,186 European ancestry controls, 1,588 Chinese ancestry cases, 3,546 Chinese ancestry controls	5,134 European ancestry cases, 5,633 European ancestry controls, 5,151 Chinese ancestry cases, 5,152 Chinese ancestry controls	5q33.3	IL12B	rs7709212-T	0.657	2E-30		1.38	[1.31-1.46]	Illumina [up to 4778154] (imputed)	N
1796	chr5	158764176	158764177	rs7709212	25903422	Yin X	2015-04-23	Nat Commun	Genome-wide meta-analysis identifies multiple novel associations and ethnic heterogeneity of psoriasis susceptibility.	Psoriasis	3,496 European ancestry cases, 5,186 European ancestry controls, 1,588 Chinese ancestry cases, 3,546 Chinese ancestry controls	5,134 European ancestry cases, 5,633 European ancestry controls, 5,151 Chinese ancestry cases, 5,152 Chinese ancestry controls	5q33.3	IL12B	rs7709212-T	0.5189	1E-11	(Chinese)	1.4	[1.27-1.55]	Illumina [up to 4778154] (imputed)	N
1796	chr5	158764176	158764177	rs7709212	25903422	Yin X	2015-04-23	Nat Commun	Genome-wide meta-analysis identifies multiple novel associations and ethnic heterogeneity of psoriasis susceptibility.	Psoriasis	3,496 European ancestry cases, 5,186 European ancestry controls, 1,588 Chinese ancestry cases, 3,546 Chinese ancestry controls	5,134 European ancestry cases, 5,633 European ancestry controls, 5,151 Chinese ancestry cases, 5,152 Chinese ancestry controls	5q33.3	IFIH1	rs3747517-T	0.682	5E-9	(Chinese, conditional on rs1990760)	1.25	[1.16-1.35]	Illumina [up to 4778154] (imputed)	N
1796	chr5	158764477	158764478	rs4921482	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	5q33.3	IL12B	rs4921482-?	NR	9E-25	(subset analysis)			Illumina [130052]	N
1796	chr5	158764477	158764478	rs4921482	26626624	Stuart PE	2015-11-28	Am J Hum Genet	Genome-wide Association Analysis of Psoriatic Arthritis and Cutaneous Psoriasis Reveals Differences in Their Genetic Architecture.	Psoriatic arthritis	1,946 European ancestry cases, 4,934 European ancestry controls	up to 2,883 European ancestry cases, up to 14,179 European ancestry controls	5q33.3	IL12B, ADRA1B, RNF145	rs4921482-T	NR	1E-24		1.465	NR	Illumina [11532644] (imputed)	N
1796	chr5	158766021	158766022	rs62377586	33385400	Patrick MT	2020-12-29	J Invest Dermatol	Causal relationship and shared genetic loci between psoriasis and type 2 diabetes through trans-disease meta-analysis.	Psoriasis or type 2 diabetes (trans-disease meta-analysis)(opposite effect)	11,024 European ancestry psoriasis cases, 74,124 European ancestry diabetes cases, 840,342 European ancestry controls	NA	5q33.3	NR	rs62377586-G		3E-50		1.18		NR [8016731] (imputed)	N
1796	chr5	158768364	158768365	rs4921483	30552173	Aterido A	2018-12-14	Ann Rheum Dis	Genetic variation at the glycosaminoglycan metabolism pathway contributes to the risk of psoriatic arthritis but not psoriasis.	Psoriatic arthritis	744 Spanish ancestry cases, 1,454 Spanish ancestry controls	1,430 cases, 1,417 controls	5q33.3	NR	rs4921483-?	NR	9E-10		6.13	[NR] z-score increase	Illumina [1387382] (imputed)	N
1796	chr5	158769752	158769753	rs4921484	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL12B;IL23A	5,368 Icelandic ancestry individuals	NA	5q33.3		rs4921484-T	0.3141	3E-105		0.423274	[0.39-0.46] unit decrease	Illumina [7506463] (imputed)	N
1796	chr5	158769752	158769753	rs4921484	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL12B	5,363 Icelandic ancestry individuals	NA	5q33.3		rs4921484-T	0.3141	2E-162		0.509124	[0.47-0.55] unit decrease	Illumina [7506463] (imputed)	N
1796	chr5	158769752	158769753	rs4921484	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	5q33.3		rs4921484-C	0.682072	1E-28		1.0518157	[1.04-1.06]	Affymetrix, Illumina [9851866] (imputed)	N
1796	chr5	158769752	158769753	rs4921484	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5q33.3	IL12B	rs4921484-C	0.678	7E-33	(Interleukin-23, IL12B.IL23A.10365.132.3)	0.31	[0.25-0.37] unit increase	Affymetrix [10572788] (imputed)	N
1796	chr5	158774964	158774965	rs983825	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	5q33.3	IL12B	rs983825-A	0.69078125	3E-87	(IL12B, 13733_5_3)	0.4999147	[0.45-0.55] unit increase	Illumina [> 1000000] (imputed)	N
1796	chr5	158783222	158783223	rs6556411	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	5q33.3	AC008697.1	rs6556411-?	NR	3E-11	(subset analysis)			Illumina [130052]	N
1796	chr5	158787384	158787385	rs6556412	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	5q33.3	NR	rs6556412-A	0.326	1E-32	(EA)	1.1336317	[1.11-1.15]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1796	chr5	158787384	158787385	rs6556412	21102463	Franke A	2010-11-21	Nat Genet	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry trios	5q33.3	IL12B	rs6556412-A	0.332	5E-14		1.18	[1.13-1.24]	Affymetrix, Illumina [953241] (imputed)	N
1796	chr5	158792818	158792819	rs10076557	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	5q33.3	NR	rs10076557-?	NR	1E-17	(IL-12)	0.482367	[0.37-0.59] unit increase	Illumina [11901634] (imputed)	N
1796	chr5	158797726	158797727	rs12515766	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	683 Turkish ancestry cases, 1,721 Turkish ancestry controls	NA	5q33.3	IL12B	rs12515766-G	0.3123	2E-8		1.458	[1.277-1.664]	Illumina [4495750] (imputed)	N
1796	chr5	158799747	158799748	rs35990859	26278503	Huang C	2015-11-01	Gastroenterology	Characterization of genetic loci that affect susceptibility to inflammatory bowel diseases in African Americans.	Inflammatory bowel disease	1,511 African American cases, 1,797 African American controls	NA	5q33.3	IL12B	rs35990859-G	NR	7E-6		2.5445292	[1.69-3.83]	Illumina [130241]	N
1796	chr5	158803085	158803086	rs6897260	32641083	Hillary RF	2020-07-08	Genome Med	Multi-method genome- and epigenome-wide studies of inflammatory protein levels in healthy older adults.	Interleukin-12 subunit B levels	982 Scottish ancestry individuals	NA	5q33.3	NR	rs6897260-A	0.30706	3E-22		0.47985	[0.38-0.58] unit decrease	Illumina [7903493] (imputed)	N
1796	chr5	158804927	158804928	rs4379175	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	286 European ancestry cases, 2,652 European ancestry controls, 76 Han Chinese ancestry cases, 889 Han Chinese ancestry controls, 46 South Asian ancestry cases, 501 South Asian ancestry controls, 683 Turkish ancestry cases, 1,721 Turkish ancestry controls	NA	5q33.3	IL12B	rs4379175-T	NR	3E-9		1.3624	NR	Illumina [up to 4495750] (imputed)	N
1796	chr5	158804927	158804928	rs4379175	23143594	Tsoi LC	2012-12-01	Nat Genet	Identification of 15 new psoriasis susceptibility loci highlights the role of innate immunity.	Psoriasis	10,588 European ancestry cases, 22,806 European ancestry controls	NA	5q33.3	IL12B	rs4379175-G	0.68	9E-40	(conditioned on rs12188300)	1.31		Illumina [111236] (imputed)	N
1796	chr5	158814532	158814533	rs10045431	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Crohn's disease vs rheumatoid arthritis (ordinary least squares (OLS))	5,956 Crohn's disease cases, 8,875 rheumatoid arthritis cases	14,594 Crohn's disease cases, 5,486 rheumatoid arthritis cases	5q33.3		rs10045431-?	NR	1E-8		0.048	NR unit increase	NR [5890016] (imputed)	N
1796	chr5	158814532	158814533	rs10045431	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	5q33.3	NR	rs10045431-?		1E-10	(IL12B)			Illumina [NR]	N
1796	chr5	158814532	158814533	rs10045431	25147954	Enroth S	2014-08-22	Nat Commun	Strong effects of genetic and lifestyle factors on biomarker variation and use of personalized cutoffs.	interleukin 12 receptor subunit beta-1 levels	up to 653 individuals	up to 317 individuals	5q33.3	IL12B	rs10045431-A	0.25603	9E-17		0.47	[0.36-0.58] unit increase	Illumina [4840842] (imputed)	N
1796	chr5	158814532	158814533	rs10045431	20570966	McGovern DP	2010-06-22	Hum Mol Genet	Fucosyltransferase 2 (FUT2) non-secretor status is associated with Crohn's disease.	Crohn's disease	896 European ancestry cases, 3,204 European ancestry controls	1,174 European ancestry cases, 357 European ancestry controls	5q33.3	IL12B	rs10045431-?	NR	7E-8		1.45	[1.27-1.64]	Illumina [304825]	N
1796	chr5	158814532	158814533	rs10045431	18587394	Barrett JC	2008-06-29	Nat Genet	Genome-wide association defines more than 30 distinct susceptibility loci for Crohn's disease.	Crohn's disease	3,230 European ancestry cases, 4,829 European ancestry controls	1,339 European ancestry trios, 2,325 European ancestry cases, 1,809 European ancestry controls	5q33.3	IL12B	rs10045431-C	0.71	4E-13		1.11	[NR]	Affymetrix, Illumina [635547] (imputed)	N
1796	chr5	158818744	158818745	rs6556416	31320639	Hillary RF	2019-07-18	Nat Commun	Genome and epigenome wide studies of neurological protein biomarkers in the Lothian Birth Cohort 1936.	Neurological blood protein biomarker levels	750 European ancestry individuals	NA	5q33.3	AC008697.1	rs6556416-A	0.3124	7E-18	(IL12)	0.49166	[0.38-0.6] unit decrease	Illumina [8683751] (imputed)	N
1796	chr5	158818744	158818745	rs6556416	23749187	Cortes A	2013-07-01	Nat Genet	Identification of multiple risk variants for ankylosing spondylitis through high-density genotyping of immune-related loci.	Ankylosing spondylitis	9,069 European ancestry cases, 1,550 East Asian ancestry cases, 13,578 European ancestry controls, 1,567 East Asian ancestry controls	NA	5q33.3	IL12B	rs6556416-C	0.675	4E-6	(conditioned on rs6871626, EA)	1.11		Illumina [128935]	N
1796	chr5	158818744	158818745	rs6556416	21743469	Evans DM	2011-07-10	Nat Genet	Interaction between ERAP1 and HLA-B27 in ankylosing spondylitis implicates peptide handling in the mechanism for HLA-B27 in disease susceptibility.	Ankylosing spondylitis	3,023 European ancestry cases, 8,779 European ancestry controls	2,111 European ancestry cases, 4,483 European ancestry controls	5q33.3	IL12B	rs6556416-C	0.67	2E-8				Illumina [2223620] (imputed)	N
1796	chr5	158820843	158820844	rs9313808	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	5q33.3	NR	rs9313808-G	0.83	1E-25	(EA)	1.1528302		Affymetrix, Illumina [~ 9000000] (imputed)	N
1796	chr5	158822644	158822645	rs6887695	17554261	Parkes M	2007-06-06	Nat Genet	Sequence variants in the autophagy gene IRGM and multiple other replicating loci contribute to Crohn's disease susceptibility.	Crohn's disease	1,748 cases, 2,938 controls	1,182 European ancestry cases, 2,024 European ancestry controls	5q33.3	IL12B	rs6887695-?	0.32	9E-6		1.26	[1.12-1.41]	Affymetrix [see WTCCC]	N
1796	chr5	158826356	158826357	rs918519	29739359	Graham PS	2018-05-08	BMC Med Genet	Genome-wide association studies for diabetic macular edema and proliferative diabetic retinopathy.	Proliferative diabetic retinopathy in type 2 diabetes	176 European ancestry cases, 435 European ancestry controls	NA	5q33.3	LOC285626	rs918519-?	0.769	4E-6		2.86	[1.85-4.55]	Illumina [617130]	N
1796	chr5	158826791	158826792	rs6871626	32421744	Gzara C	2020-05-18	PLoS Pathog	Family-based genome-wide association study of leprosy in Vietnam.	Leprosy	1,749 Vietnamese ancestry cases	1,181 Vietnamese ancestry cases, 688 Vietnamese ancestry controls	5q33.3	IL12B	rs6871626-C	0.65	6E-8		1.369863	[1.19-1.64]	Illumina [5607170] (imputed)	N
1796	chr5	158826791	158826792	rs6871626	23749187	Cortes A	2013-07-01	Nat Genet	Identification of multiple risk variants for ankylosing spondylitis through high-density genotyping of immune-related loci.	Ankylosing spondylitis	9,069 European ancestry cases, 1,550 East Asian ancestry cases, 13,578 European ancestry controls, 1,567 East Asian ancestry controls	NA	5q33.3	IL12B	rs6871626-A	0.337	6E-8	(EA)	1.12		Illumina [128935]	N
1796	chr5	158826791	158826792	rs6871626	23749187	Cortes A	2013-07-01	Nat Genet	Identification of multiple risk variants for ankylosing spondylitis through high-density genotyping of immune-related loci.	Ankylosing spondylitis	9,069 European ancestry cases, 1,550 East Asian ancestry cases, 13,578 European ancestry controls, 1,567 East Asian ancestry controls	NA	5q33.3	IL12B	rs6871626-A	0.337	3E-8		1.1		Illumina [128935]	N
1796	chr5	158826791	158826792	rs6871626	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	5q33.3	IL12B	rs6871626-A	0.337	1E-42		1.181	[1.146-1.216]	Affymetrix, Illumina [1230000] (imputed)	N
1796	chr5	158826791	158826792	rs6871626	21297633	Anderson CA	2011-02-06	Nat Genet	Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47.	Ulcerative colitis	6,687 European ancestry cases, 19,718 European ancestry controls	9,628 European ancestry cases, 12,917 European ancestry controls	5q33.3	IL12B	rs6871626-A	0.33	1E-21		1.17	[1.12-1.22]	Affymetrix, Illumina [~ 1100000] (imputed)	N
1796	chr5	158827768	158827769	rs56167332	32581322	Kakuta Y	2020-06-24	Sci Rep	An Integrated Genomic and Transcriptomic Analysis Reveals Candidates of Susceptibility Genes for Crohn's Disease in Japanese Populations.	Crohn's disease	713 Japanese ancestry cases, 2,063 Japanese ancestry controls	NA	5q33.3	IL12B	rs56167332-?	NR	3E-7		1.07	[1.04-1.09]	NR [7424691] (imputed)	N
1796	chr5	158827768	158827769	rs56167332	30500874	Kakuta Y	2018-11-29	J Crohns Colitis	A genome-wide association study identifying RAP1A as a novel susceptibility gene for Crohn's disease in Japanese individuals.	Crohn's disease	713 Japanese ancestry cases, 2,083 Japanese ancestry controls	770 Japanese ancestry cases, 852 Japanese ancestry controls	5q33.3	IL12B	rs56167332-?	0.381	9E-8		1.43	NR	NR [4335144] (imputed)	N
1796	chr5	158827768	158827769	rs56167332	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Ulcerative colitis	12,366 European and unknown ancestry cases, 33,609 European and unknown ancestry controls	NA	5q33.3	UBLCP1, IL12B	rs56167332-?		1E-23				Illumina [9578670] (imputed)	N
1796	chr5	158827768	158827769	rs56167332	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	5q33.3	UBLCP1, IL12B	rs56167332-?		3E-38				Illumina [9725440] (imputed)	N
1796	chr5	158827768	158827769	rs56167332	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	5q33.3	UBLCP1, IL12B	rs56167332-?		1E-27				Illumina [9560910] (imputed)	N
1796	chr5	158827768	158827769	rs56167332	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	5q33.3	intergenic	rs56167332-?	NR	3E-43	(subset analysis)			Illumina [130052]	N
1796	chr5	158827768	158827769	rs56167332	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	5q33.3	NR	rs56167332-A	0.3375	7E-27	(EA)	1.1518488	[1.13-1.18]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1796	chr5	158827768	158827769	rs56167332	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	5q33.3	NR	rs56167332-A	0.3375	7E-50	(EA)	1.1686567	[1.15-1.19]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1796	chr5	158827768	158827769	rs56167332	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	5q33.3	NR	rs56167332-A	0.3375	2E-41	(EA)	1.1859788	[1.16-1.21]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1796	chr5	158827768	158827769	rs56167332	23830517	Saruhan-Direskeneli G	2013-07-03	Am J Hum Genet	Identification of multiple genetic susceptibility loci in Takayasu arteritis.	Takayasu arteritis	305 Turkish ancestry cases, 106 European ancestry cases, 483 Turkish ancestry controls, 553 European ancestry controls	NA	5q33.3	IL12B	rs56167332-A	NR	2E-6		1.54		Illumina [at least 124312]	N
1796	chr5	158829293	158829294	rs755374	26301688	Li YR	2015-08-24	Nat Med	Meta-analysis of shared genetic architecture across ten pediatric autoimmune diseases.	Pediatric autoimmune diseases	97 European ancestry thyroiditis cases, 107 European ancestry ankylosing spondylitis cases, 100 European ancestry psoriasis cases, 173 European ancestry celiac disease cases, 254 European ancestry systemic lupus erythematosus cases, 308 European ancestry common variable inmunodeficiency cases, 865 European ancestry ulcerative colitis cases, 1,086 European ancestry Type 1 diabetes cases, 1,123  European ancestry juvenile idiopathic arthritis cases, 1,922  European ancestry Crohn's disease cases, 10,718 European ancestry controls	NA	5q33.3	IL12B	rs755374-T	0.32	2E-10				Illumina [7347414] (imputed)	N
1796	chr5	158829526	158829527	rs12188300	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Psoriasis vulgaris	5,072 European ancestry cases, 478,102 European ancestry controls, 206 East Asian ancestry cases, 172,289 East Asian ancestry controls	NA	5q33.3		rs12188300-T	NR	3E-23		0.3952	[0.32-0.47] unit increase	Affymetrix, Illumina [25844455] (imputed)	N
1796	chr5	158829526	158829527	rs12188300	33385400	Patrick MT	2020-12-29	J Invest Dermatol	Causal relationship and shared genetic loci between psoriasis and type 2 diabetes through trans-disease meta-analysis.	Psoriasis or type 2 diabetes (trans-disease meta-analysis)	11,024 European ancestry psoriasis cases, 74,124 European ancestry diabetes cases, 840,342 European ancestry controls	NA	5q33.3	NR	rs12188300-T	NR	2E-56		1.31	NR	NR [8016731] (imputed)	N
1796	chr5	158829526	158829527	rs12188300	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	5q33.3	intergenic	rs12188300-?	NR	3E-34	(subset analysis)			Illumina [130052]	N
1796	chr5	158829526	158829527	rs12188300	23143594	Tsoi LC	2012-12-01	Nat Genet	Identification of 15 new psoriasis susceptibility loci highlights the role of innate immunity.	Psoriasis	10,588 European ancestry cases, 22,806 European ancestry controls	NA	5q33.3	IL12B	rs12188300-T	0.095	3E-53		1.58		Illumina [111236] (imputed)	N
1796	chr5	158829526	158829527	rs12188300	20953186	Huffmeier U	2010-10-17	Nat Genet	Common variants at TRAF3IP2 are associated with susceptibility to psoriatic arthritis and psoriasis.	Psoriatic arthritis	572 European ancestry cases, 888 European ancestry controls	Up to 1,761 European ancestry cases, 3,727 European ancestry controls	5q33.3	IL12B	rs12188300-T	0.08	7E-17		1.7	[1.50-1.93]	Affymetrix [1585307] (imputed)	N
1796	chr5	158832276	158832277	rs4921492	26051272	Fischer A	2015-09-15	Am J Respir Crit Care Med	Identification of Immune-Relevant Factors Conferring Sarcoidosis Genetic Risk.	Sarcoidosis	1,726 European ancestry cases, 5,482 European ancestry controls	1,912 European ancestry cases, 5,938 European ancestry controls, 781 African American cases, 876 African American controls	5q33.3	IL12B	rs4921492-A	0.34	2E-9	(EA)	1.2	[1.13-1.27]	Illumina [128705]	N
1796	chr5	158836106	158836107	rs4921493	25903422	Yin X	2015-04-23	Nat Commun	Genome-wide meta-analysis identifies multiple novel associations and ethnic heterogeneity of psoriasis susceptibility.	Psoriasis	3,496 European ancestry cases, 5,186 European ancestry controls, 1,588 Chinese ancestry cases, 3,546 Chinese ancestry controls	5,134 European ancestry cases, 5,633 European ancestry controls, 5,151 Chinese ancestry cases, 5,152 Chinese ancestry controls	5q33.3	IL12B_2nd	rs4921493-T	0.641	3E-11	(EA, conditional on rs7709212)	1.26	[1.19-1.32]	Illumina [up to 4778154] (imputed)	N
1796	chr5	158836106	158836107	rs4921493	25903422	Yin X	2015-04-23	Nat Commun	Genome-wide meta-analysis identifies multiple novel associations and ethnic heterogeneity of psoriasis susceptibility.	Psoriasis	3,496 European ancestry cases, 5,186 European ancestry controls, 1,588 Chinese ancestry cases, 3,546 Chinese ancestry controls	5,134 European ancestry cases, 5,633 European ancestry controls, 5,151 Chinese ancestry cases, 5,152 Chinese ancestry controls	5q33.3	IL12B	rs4921493-T	0.641	7E-13	(conditional on rs7709212)	1.23	[1.17-1.29]	Illumina [up to 4778154] (imputed)	N
1796	chr5	158843234	158843235	rs6863015	25642632	Liu H	2015-02-02	Nat Genet	Discovery of six new susceptibility loci and analysis of pleiotropic effects in leprosy.	Leprosy	1,548 Chinese ancestry cases, 2,150 Chinese ancestry controls, 4,362 Chinese ancestry controls with immune-related diseases	6,765 Chinese ancestry cases, 9,505 Chinese ancestry controls	5q33.3	IL12B	rs6863015-C	0.696	2E-21		1.25	[NR]	Illumina [4577171] (imputed)	N
1797	chr5	158863386	158863387	rs73818525	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Inflammatory skin disease	2,079 European ancestry atopic dermatitis cases, 4,212 European ancestry psoriasis cases, 11,899 European ancestry controls	NA	5q33.3	AC008703.1	rs73818525-?	NR	5E-11	(Psoriasis)			Affymetrix, Illumina [~ 5200000]	N
1797	chr5	158863459	158863460	rs146419710	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure in major depressive disorder	13,393 European ancestry cases, 9,487 European ancestry controls	NA	5q33.3	NR	rs146419710-A	0.0225273	3E-6		1.135	[1.08-1.19]	Affymetrix [7791636] (imputed)	N
1797	chr5	158880395	158880396	rs4921230	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	5q33.3	LOC285627	rs4921230-?	NR	7E-6	(Hispanic)	1.3513513	[1.19-1.54]	Illumina [at least 5000000] (imputed)	N
1797	chr5	158883026	158883027	rs6869688	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	5q33.3	LOC285627	rs6869688-?	NR	4E-7		1.1494253	[1.08-1.22]	Illumina [at least 5000000] (imputed)	N
1797	chr5	158884534	158884535	rs7720046	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls	NA	5q33.3	LOC285627	rs7720046-?	NR	3E-7		1.1235955	[1.08-1.18]	Illumina [at least 5000000] (imputed)	N
1797	chr5	158886938	158886939	rs2421184	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	5q33.3	LINC01845	rs2421184-A	0.497	6E-12		1.106	[1.08-1.14]	Illumina [11270530] (imputed)	N
1797	chr5	158904312	158904313	rs12657996	23006423	Niu N	2012-09-24	BMC Cancer	Genetic association with overall survival of taxane-treated lung cancer patients - a genome-wide association study in human lymphoblastoid cell lines followed by a clinical association study.	Response to taxane treatment (placlitaxel)	96 African American lymphoblastoid cell lines, 96 European ancestry lymphoblastoid cell lines, 96 Han Chinese ancestry lymphoblastoid cell lines	NA	5q33.3	IL12B	rs12657996-?	NR	9E-6				Affymetrix, Illumina [~ 1300000]	N
1797	chr5	158907736	158907737	rs17722688	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-13 levels	3,557 Finnish ancestry individuals	NA	5q33.3	NR	rs17722688-C		8E-6		0.1167	[0.065-0.168] SD units increase	NR [10700000] (imputed)	N
1797	chr5	158918893	158918894	rs10866713	22190364	Patsopoulos NA	2011-12-01	Ann Neurol	Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.	Multiple sclerosis	5,545 European ancestry cases, 12,153 European ancestry controls	NA	5q33.3	IL12B	rs10866713-A	0.22	7E-7		1.17	[NR]	Affymetrix, Illumina [2529394]	N
1797	chr5	158921894	158921895	rs6880702	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5q33.3		rs6880702-?	NR	3E-10				NR [~ 8900000] (imputed)	N
1797	chr5	158956193	158956194	rs6863638	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	5q33.3	NR	rs6863638-T	0.470143	8E-11		0.011996	[0.0084-0.0156] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1797	chr5	158959918	158959919	rs6885696	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	5q33.3	NR	rs6885696-A	0.637955	8E-10		0.014358435	[0.0098-0.0189] unit decrease	Affymetrix [93095623] (imputed)	N
1797	chr5	158965774	158965775	rs10476298	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	5q33.3	NR	rs10476298-A	0.653569	2E-11		0.013441	[0.0095-0.0174] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1798	chr5	159007777	159007778	rs10065906	23377640	GENDEP Investigators	2013-02-01	Am J Psychiatry	Common genetic variation and antidepressant efficacy in major depressive disorder: a meta-analysis of three genome-wide pharmacogenetic studies.	Major depressive disorder	Up to 2,256 European ancestry cases	NA	5q33.3	intergenic	rs10065906-C	0.308	5E-8	(partial response - 2 weeks)	1.4712	[1.33-1.61]	Affymetrix, Illumina [1200000] (imputed)	N
1798	chr5	159007777	159007778	rs10065906	23377640	GENDEP Investigators	2013-02-01	Am J Psychiatry	Common genetic variation and antidepressant efficacy in major depressive disorder: a meta-analysis of three genome-wide pharmacogenetic studies.	Major depressive disorder	Up to 2,256 European ancestry cases	NA	5q33.3	MIR548D2	rs10065906-C	0.3622876	2E-6	(partial response - SSRI treated - 2 weeks)	1.5298	[1.36-1.7]	Affymetrix, Illumina [1200000] (imputed)	N
1798	chr5	159007777	159007778	rs10065906	23377640	GENDEP Investigators	2013-02-01	Am J Psychiatry	Common genetic variation and antidepressant efficacy in major depressive disorder: a meta-analysis of three genome-wide pharmacogenetic studies.	Major depressive disorder	Up to 2,256 European ancestry cases	NA	5q33.3	MIR548D2	rs10065906-C	0.332	2E-6	(% improvement - 2 weeks)	1.1655	[1.11-1.22]	Affymetrix, Illumina [1200000] (imputed)	N
1798	chr5	159009802	159009803	rs77465361	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CCR2 on CD14- CD16-	3,629 Sardinian (founder/genetic isolate) ancestry individuals	NA	5q33.3		rs77465361-T	0.02372	8E-9		0.4573	[0.3-0.61] unit increase	Illumina [18218967] (imputed)	N
1798	chr5	159022803	159022804	rs11952006	29678681	Matana A	2018-04-18	Genomics	Genome-wide meta-analysis identifies novel gender specific loci associated with thyroid antibodies level in Croatians.	Plasma anti-thyroglobulin levels	1,596 Croatian ancestry women, 1,033 Croatian ancestry men	NA	5q33.3	ADRA1B	rs11952006-A	NR	3E-6	(men)	0.2676758	[0.16-0.38] unit increase	Illumina [5527232] (imputed)	N
1798	chr5	159024207	159024208	rs143140428	29532581	Hallfors J	2018-03-13	Addict Biol	Genome-wide association study in Finnish twins highlights the connection between nicotine addiction and neurotrophin signaling pathway.	Nicotine withdrawal	540 Finnish ancestry cases and 1,163 Finnish ancestry controls from up to 739 families	NA	5q33.3	NR	rs143140428-A	0.014931	9E-7		0.3484224	[0.21-0.49] unit increase	Illumina [9469131] (imputed)	N
1798	chr5	159101705	159101706	rs7705455	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	5q33.3		rs7705455-?	NR	6E-9				NR [~ 8900000] (imputed)	N
1799	chr5	159166358	159166359	rs62379337	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Alanine aminotransferase levels in low alcohol consumption	8,716 individuals	NA	5q33.3	NR	rs62379337-?	NR	3E-6		0.151	[0.088-0.214] unit increase	Illumina [~ 7800000] (imputed)	N
1799	chr5	159181809	159181810	rs73303785	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	5q33.3	intergenic	rs73303785-?	NR	3E-6		0.247	[0.13-0.36] unit decrease	Illumina [at least 13000000] (imputed)	N
1799	chr5	159197546	159197547	rs75170853	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	5q33.3		rs75170853-A	0.9492151	6E-10		0.031900212	[0.022-0.042] unit decrease	Affymetrix [93095623] (imputed)	N
1799	chr5	159248013	159248014	rs17057166	25866641	Xu W	2015-03-19	Biomark Res	A genome wide association study on Newfoundland colorectal cancer patients' survival outcomes.	Survival in rectal cancer	171 European ancestry cases	NA	5q33.3	AC011343.1	rs17057166-?		2E-7	(disease-free survival)	5.56	[2.91-10.64]	Illumina [729737]	N
1800	chr5	159264674	159264675	rs11750868	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	5q33.3	Intergenic	rs11750868-?	NR	3E-6		1.466	[NR]	Affymetrix [492217] (imputed)	N
1800	chr5	159277284	159277285	rs75853687	30578281	Williams LM	2018-12-01	Blood Adv	A locus on chromosome 5 shows African ancestry-limited association with alloimmunization in sickle cell disease.	Alloimmunization response to red blood cell transfusion in sickle cell anemia	144 African American cases, 123 African American controls	62 African American cases, 68 African American controls	5q33.3	LOC101927766, LINC01847	rs75853687-A	0.008	7E-9		16.5	[3.9-69.3] Discovery	Illumina [1509415]	N
1800	chr5	159321560	159321561	rs7736525	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	5q33.3		rs7736525-C	NR	1E-8		0.0213	[0.014-0.029] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
1800	chr5	159341074	159341075	rs80184476	31296530	Trendowski MR	2019-07-11	Clin Cancer Res	Clinical and Genome-Wide Analysis of Serum Platinum Levels after Cisplatin-Based Chemotherapy.	Serum platinum levels after completion of cisplatin chemotherapy	866 European ancestry individuals, 17 non-European ancestry individuals, 127 individuals	NR	5q33.3	NR	rs80184476-T	0.0349	2E-6		0.3691	[0.22-0.52] unit increase	Illumina [7305641] (imputed)	N
1800	chr5	159367970	159367971	rs11750092	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NA	5q33.3	intergenic	rs11750092-T	0.16	7E-6		1.07	[1.04-1.11]	Affymetrix, Illumina [~ 2300000] (imputed)	N
1800	chr5	159374212	159374213	rs55666217	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	5q33.3	NR	rs55666217-?	NR	8E-6		0.114	[0.064-0.164] unit decrease	Illumina [at least 560000] (imputed)	N
1801	chr5	159404470	159404471	rs148871069	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	5q33.3		rs148871069-G	NR	3E-9		0.0837	[0.056-0.111] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
1801	chr5	159404470	159404471	rs148871069	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	5q33.3		rs148871069-G	NR	2E-9		0.0785	[0.053-0.104] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
1801	chr5	159404470	159404471	rs148871069	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	5q33.3		rs148871069-G	NR	6E-12		0.0923	[0.066-0.119] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
1801	chr5	159404470	159404471	rs148871069	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q33.3	NR	rs148871069-G	0.00518405	2E-13				Affymetrix, Illumina [24332387] (imputed)	N
1801	chr5	159404470	159404471	rs148871069	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	5q33.3	NR	rs148871069-G	0.005299	2E-15		0.104779	[0.079-0.131] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1801	chr5	159404470	159404471	rs148871069	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	5q33.3	ADRA1B, TTC1	rs148871069-A		4E-11		2.37	unit increase	Affymetrix [at least 2696785] (imputed)	N
1801	chr5	159404470	159404471	rs148871069	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	5q33.3	ADRA1B, TTC1	rs148871069-A		4E-7		1.256	unit increase	Affymetrix [at least 2696785] (imputed)	N
1801	chr5	159404470	159404471	rs148871069	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	5q33.3	ADRA1B, TTC1	rs148871069-A		8E-8		1.125	unit increase	Affymetrix [at least 2696785] (imputed)	N
1801	chr5	159437738	159437739	rs200775911	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	5q33.3	TTC1	rs200775911-T		3E-9		0.111	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
1801	chr5	159487322	159487323	rs10073416	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	5q33.3		rs10073416-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1801	chr5	159488667	159488668	rs112983803	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	5q33.3		rs112983803-C	NR	4E-8		0.0268	[0.017-0.036] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1801	chr5	159509399	159509400	rs4582322	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 5)	4,680 European ancestry individuals	3,566 European ancestry individuals	5q33.3		rs4582322-G	0.402245707	1E-8				Illumina [7417619] (imputed)	N
1802	chr5	159559406	159559407	rs543307500	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	5q33.3		rs543307500-A	NR	3E-8		0.0858	[0.055-0.116] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1802	chr5	159559406	159559407	rs543307500	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	5q33.3	AC008706.1	rs543307500-A	0.00553499999999996	6E-13		0.11065835	[0.081-0.141] unit decrease	Affymetrix [93095623] (imputed)	N
1802	chr5	159559406	159559407	rs543307500	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	5q33.3	AC008706.1	rs543307500-A	0.00553300000000001	2E-14		0.117221735	[0.087-0.147] unit decrease	Affymetrix [93095623] (imputed)	N
1802	chr5	159559406	159559407	rs543307500	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q33.3	NR	rs543307500-G	0.994715	1E-11				Affymetrix, Illumina [24653286] (imputed)	N
1802	chr5	159559406	159559407	rs543307500	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	5q33.3	NR	rs543307500-G	0.994603	7E-14		0.097951	[0.072-0.124] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
1802	chr5	159559406	159559407	rs543307500	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q33.3	NR	rs543307500-G	0.994726	3E-15				Affymetrix, Illumina [24558453] (imputed)	N
1802	chr5	159559406	159559407	rs543307500	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	5q33.3	NR	rs543307500-G	0.994614	4E-17		0.110354	[0.085-0.136] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
1802	chr5	159561092	159561093	rs549660100	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	5q33.3	AC008706.1	rs549660100-A	0.00552299999999995	6E-13		0.110447906	[0.08-0.141] unit decrease	Affymetrix [93095623] (imputed)	N
1802	chr5	159585579	159585580	rs2546986	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	5q33.3	intergenic	rs2546986-T	0.5422	2E-23		0.03627808	[0.029-0.043] unit increase	Affymetrix [~ 2500000] (imputed)	N
1802	chr5	159591477	159591478	rs2546984	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	5q33.3	FABP6	rs2546984-T	0.222892	8E-11		0.014474	[0.01-0.019] unit increase	NR [13737936] (imputed)	N
1802	chr5	159592856	159592857	rs2546371	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	5q33.3		rs2546371-C	0.222	3E-30				Affymetrix [10369434] (imputed)	N
1802	chr5	159595034	159595035	rs75583333	26821981	Koga AT	2016-01-28	J Neural Transm (Vienna)	Genome-wide association analysis to predict optimal antipsychotic dosage in schizophrenia: a pilot study.	antipsychotic drug dosage in schizophrenia or schizoaffective disorder	up to 39 European ancestry schizophrenia cases, up to 40 European ancestry schizoaffective cases	NA	5q33.3	NR	rs75583333-A	NR	9E-7	(PM %)	0.4132	[NR] unit increase	Illumina [1190033]	N
1802	chr5	159595611	159595612	rs2546979	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	5q33.3		rs2546979-C	NR	9E-75		0.0369	[0.033-0.041] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1802	chr5	159595611	159595612	rs2546979	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q33.3	NR	rs2546979-C	0.660394	1E-120				Affymetrix, Illumina [24588908] (imputed)	N
1802	chr5	159595611	159595612	rs2546979	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	5q33.3	NR	rs2546979-C	0.699502	2E-106		0.043768	[0.04-0.048] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1802	chr5	159595611	159595612	rs2546979	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q33.3	NR	rs2546979-G	0.302835	1E-104				Affymetrix, Illumina [17210439] (imputed)	N
1802	chr5	159595611	159595612	rs2546979	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	5q33.3	NR	rs2546979-G	0.300178	1E-105		0.045654	[0.042-0.05] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
1802	chr5	159595611	159595612	rs2546979	27668658	Iotchkova V	2016-11-01	Nat Genet	Discovery and refinement of genetic loci associated with cardiometabolic risk using dense imputation maps.	Cardiometabolic and hematological traits	up to 35,981 European ancestry individuals	up to 102,505 European ancestry individuals	5q33.3	FABP6	rs2546979-C		2E-31	(PLT)	0.049	[0.041-0.057] unit decrease	Affymetrix, Illumina [17000000] (imputed)	N
1802	chr5	159595893	159595894	rs4538653	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	5q33.3		rs4538653-C	0.699691	7E-62		0.0412343	[0.036-0.046] unit decrease	Affymetrix [93095623] (imputed)	N
1802	chr5	159595893	159595894	rs4538653	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	5q33.3		rs4538653-C	0.699659	4E-87		0.04892358	[0.044-0.054] unit increase	Affymetrix [93095623] (imputed)	N
1802	chr5	159598263	159598264	rs6556471	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	5q33.3	intergenic	rs6556471-C	0.6773	5E-12		0.02709551	[0.019-0.035] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1802	chr5	159598263	159598264	rs6556471	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	5q33.3	intergenic	rs6556471-C	0.6776	3E-32		0.04617154	[0.039-0.054] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1802	chr5	159599805	159599806	rs2546366	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	5q33.3		rs2546366-T	0.322	4E-39				Affymetrix [10369434] (imputed)	N
1802	chr5	159600213	159600214	rs2546976	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	5q33.3	intergenic	rs2546976-C	0.6753	8E-33		0.04625529	[0.039-0.054] unit increase	Affymetrix [~ 2500000] (imputed)	N
1802	chr5	159604307	159604308	rs10463076	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5q33.3		rs10463076-?	NR	7E-9				NR [~ 8900000] (imputed)	N
1802	chr5	159605021	159605022	rs78560760	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	5q33.3		rs78560760-C	0.677978	1E-24		0.024856491	[0.02-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
1802	chr5	159613364	159613365	rs11749099	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	5q33.3		rs11749099-C	0.92	4E-17				Affymetrix [10369434] (imputed)	N
1802	chr5	159613927	159613928	rs888920	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	5q33.3	FABP6	rs888920-T	0.66341	2E-21		0.025425218	[0.02-0.031] unit increase	Affymetrix [93095623] (imputed)	N
1802	chr5	159620491	159620492	rs4543312	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Platelet count	108,208 Japanese ancestry individuals	NA	5q33.3	FABP6	rs4543312-?	NR	3E-17		0.04605	[0.035-0.057] unit increase novel	Illumina [6108953] (imputed)	N
1802	chr5	159626791	159626792	rs11957969	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	145,648 East Asian ancestry individuals	NA	5q33.3	NR	rs11957969-T	0.181032	4E-26		0.051229	[0.042-0.061] SD units decrease	Affymetrix, Illumina [16710488] (imputed)	N
1802	chr5	159631503	159631504	rs2032837	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	5q33.3		rs2032837-G	0.815164	1E-22		0.0416849	[0.033-0.05] unit increase	Illumina [13478928] (imputed)	N
1802	chr5	159633680	159633681	rs10866717	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	5q33.3	FABP6	rs10866717-T	0.848172	4E-17		0.026553435	[0.02-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
1802	chr5	159640651	159640652	rs6556482	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	5q33.3	FABP6	rs6556482-A	0.9115904	3E-17		0.033794016	[0.026-0.042] unit increase	Affymetrix [93095623] (imputed)	N
1803	chr5	159646897	159646898	rs6868047	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	5q33.3	FABP6	rs6868047-C	0.433117	8E-9		0.014686274	[0.0097-0.0197] unit decrease	Affymetrix [93095623] (imputed)	N
1803	chr5	159669412	159669413	rs7733905	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5q33.3	CCNJL	rs7733905-?	NR	6E-6	(cotinine)	0.4324982	[0.25-0.62] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1803	chr5	159670625	159670626	rs4594895	31596875	Traylor M	2019-10-09	PLoS One	Genetic associations with radiological damage in rheumatoid arthritis: Meta-analysis of seven genome-wide association studies of 2,775 cases.	Joint damage in rheumatoid arthritis	2,527 European ancestry individuals	NA	5q33.3	intergenic	rs4594895-?	NR	2E-6				Affymetrix, Illumina [2723488] (imputed)	N
1803	chr5	159694356	159694357	rs17472426	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	5q33.3	CCNJL	rs17472426-T	0.92	4E-8	(EA, men)	0.052	[0.033-0.071] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1804	chr5	159801212	159801213	rs147937360	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	5q33.3	Intergenic	rs147937360-G	NR	5E-6		0.115644	[0.066-0.165] unit decrease	Illumina [13520550] (imputed)	N
1804	chr5	159820930	159820931	rs10515808	23643386	Hatoum IJ	2013-05-02	Am J Hum Genet	Weight loss after gastric bypass is associated with a variant at 15q26.1.	Weight loss (gastric bypass surgery)	693 European ancestry individuals	327 European ancestry individuals	5q33.3	C1QTNF2	rs10515808-A	NR	4E-7		3.08	[1.88-4.28] unit decrease	Illumina [1943170] (imputed)	N
1804	chr5	159844274	159844275	rs2910195	29206233	Shendre A	2017-12-04	PLoS One	Genome-wide admixture and association study of subclinical atherosclerosis in the Women's Interagency HIV Study (WIHS).	Common carotid intima-media thickness	682 Black non-Hispanic HIV-positive women, 288 Black non-Hispanic HIV-negative women	NA	5q33.3	SLU7	rs2910195-C	NR	1E-6		0.02179	[NR] unit increase	Illumina [1124301]	N
1804	chr5	159849585	159849586	rs1895320	22791750	Chen G	2012-07-12	Hum Mol Genet	Genome-wide association study identifies novel loci association with fasting insulin and insulin resistance in African Americans.	Insulin-related traits	927 African American non-diabetic individuals	570 West African ancestry non-diabetic individuals	5q33.3	PTTG1	rs1895320-C	0.12	6E-6	(FI)	0.22	[0.12-0.32] unit increase	Affymetrix [5396838] (imputed)	N
1804	chr5	159857763	159857764	rs6882742	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	5q33.3	NR	rs6882742-?	NR	2E-8				Affymetrix [NR]	N
1804	chr5	159864988	159864989	rs60836640	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Subjective well-being	298,420 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	5q33.3	NR	rs60836640-A	0.9924	7E-6		0.10883452	[0.061-0.156] unit decrease	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
1804	chr5	159868957	159868958	rs2961914	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q33.3	NR	rs2961914-A	0.206762	3E-13				Affymetrix, Illumina [19872809] (imputed)	N
1804	chr5	159868957	159868958	rs2961914	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	5q33.3	NR	rs2961914-A	0.200416	1E-14		0.019037	[0.014-0.024] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
1804	chr5	159870610	159870611	rs4921283	27193031	Marquez A	2016-05-18	Ann Rheum Dis	A combined large-scale meta-analysis identifies COG6 as a novel shared risk locus for rheumatoid arthritis and systemic lupus erythematosus.	Systemic lupus erythematosus or rheumatoid arthritis	2,237 European ancestry systemic lupus erythematosus cases, 3,911 European ancestry rheumatoid arthritis cases, 10,398 European ancestry controls	1,957 European ancestry systemic lupus erythematosus cases, 13,641 European ancestry rheumatoid arthritis cases, 36,509 European ancestry controls	5q33.3	PTTG1	rs4921283-?		1E-7	(same effect)	1.0752687	[NR]	NR [at least 309839] (imputed)	N
1804	chr5	159875984	159875985	rs76586863	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Skin reflectance (Melanin index)	720 South Asian ancestry individuals		5q33.3	NR	rs76586863-T	NR	3E-6	(conditioned on rs1426654)	0.60333	[0.35-0.86] unit decrease	Affymetrix, Illumina [at least 398118] (imputed)	N
1804	chr5	159878539	159878540	rs35438341	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	5q33.3		rs35438341-T	NR	7E-10		0.0125	[0.0086-0.0164] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
1804	chr5	159878539	159878540	rs35438341	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	5q33.3		rs35438341-T	0.199855	1E-13		0.021631643	[0.016-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1804	chr5	159878539	159878540	rs35438341	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	5q33.3		rs35438341-T	0.199847	2E-14		0.0214221	[0.016-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1804	chr5	159879257	159879258	rs2431696	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	5q33.3		rs2431696-?	NR	2E-13				NR [~ 8900000] (imputed)	N
1804	chr5	159879977	159879978	rs2431697	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	Systemic lupus erythematosus	1,639 East Asian ancestry cases, 2,410 East Asian ancestry controls	NA	5q33.3	NR	rs2431697-A	NR	3E-8				Illumina [NR] (imputed)	N
1804	chr5	159879977	159879978	rs2431697	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	5q33.3	MIR3142	rs2431697-T	0.833	1E-28		1.241	[1.2-1.28]	Illumina [11270530] (imputed)	N
1804	chr5	159879977	159879978	rs2431697	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	5q33.3	PTTG1, MIR146A	rs2431697-?	NR	1E-12	(AA)	1.3157895	[1.22-1.43]	Illumina [at least 5000000] (imputed)	N
1804	chr5	159879977	159879978	rs2431697	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls	NA	5q33.3	PTTG1, MIR146A	rs2431697-?	NR	4E-14		1.1904762	[1.14-1.23]	Illumina [at least 5000000] (imputed)	N
1804	chr5	159879977	159879978	rs2431697	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	2,018 European ancestry cases, 6,925 European ancestry controls	5q33.3	MIR146A	rs2431697-T		8E-28		1.26	[1.21-1.31]	Illumina [644674]	N
1804	chr5	159879977	159879978	rs2431697	21408207	Chung SA	2011-03-03	PLoS Genet	Differential genetic associations for systemic lupus erythematosus based on anti-dsDNA autoantibody production.	Systemic lupus erythematosus	811 anti-dsDNA positive European ancestry cases, 906 anti-dsDNA negative European ancestry cases, 4,813 European ancestry controls	NA	5q33.3	PTTG1	rs2431697-?	0.56	2E-6	(anti-dsDNA +)	1.32	[1.18-1.47]	Illumina [421318] (imputed)	N
1804	chr5	159886619	159886620	rs2431099	19838195	Gateva V	2009-11-01	Nat Genet	A large-scale replication study identifies TNIP1, PRDM1, JAZF1, UHRF1BP1 and IL10 as risk loci for systemic lupus erythematosus.	Systemic lupus erythematosus	1,310 European ancestry cases, 7,859 European ancestry controls	1,963 European ancestry cases, 4,329 European ancestry controls	5q33.3	PTTG1	rs2431099-G	0.52	2E-6		1.15	[1.09-1.22]	Illumina [~ 2100000] (imputed)	N
1804	chr5	159887335	159887336	rs2431098	30573655	Acosta-Herrera M	2018-12-20	Ann Rheum Dis	Genome-wide meta-analysis reveals shared new loci in systemic seropositive rheumatic diseases.	Systemic seropositive rheumatic diseases (Systemic sclerosis or systemic lupus erythematosus or rheumatoid arthritis or idiopathic inflammatory myopathies)	up to 4,595 European ancestry rheumatoid arthritis cases, up to 3,154 European ancestry systemic lupus erythematosus cases, up to 2,281 European ancestry systemic sclerosis cases, up to 1,674 European ancestry idiopathic inflammatory myopathy cases, 19,704 European ancestry controls	NA	5q33.3	PTTG1-MIR3142HG	rs2431098-G	NR	5E-12		1.12	[1.05-1.20]	Illumina [6450125] (imputed)	N
1804	chr5	159887335	159887336	rs2431098	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	5q33.3	PTTG1, MIR146A	rs2431098-?	NR	3E-21		1.19	[1.14-1.23]	Illumina [at least 5000000] (imputed)	N
1804	chr5	159887335	159887336	rs2431098	27399966	Morris DL	2016-07-11	Nat Genet	Genome-wide association meta-analysis in Chinese and European individuals identifies ten new loci associated with systemic lupus erythematosus.	Systemic lupus erythematosus	1,659 Chinese ancestry cases, 3,398 Chinese ancestry controls, 4,036 European ancestry cases, 6,959 European ancestry controls	3,043 Chinese ancestry cases, 5,074 Chinese ancestry controls, 2,643 European ancestry cases, 9,032 European ancestry controls	5q33.3	MIR146A	rs2431098-?	0.481	2E-15	(EA)	1.26	[NR]	NR [6344733] (imputed)	N
1804	chr5	159887335	159887336	rs2431098	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	NA	5q33.3	MIR146A	rs2431098-G		4E-18		1.25	[NR]	Illumina [> 644674] (imputed)	N
1804	chr5	159887335	159887336	rs2431098	24097067	Lessard CJ	2013-11-01	Nat Genet	Variants at multiple loci implicated in both innate and adaptive immune responses are associated with Sjogren's syndrome.	Sjogren's syndrome	395 European ancestry cases, 1,975 European ancestry controls	1,243 European ancestry cases, 4,779 European ancestry controls	5q33.3	PTTG1	rs2431098-G	0.49	2E-7		1.2345679	[1.10-1.37]	Illumina [648937]	N
1805	chr5	159909344	159909345	rs2910162	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	5q33.3	MIR3142, MIR146A	rs2910162-G	0.68	3E-9		1.033	[1.02-1.04]	Affymetrix, Illumina [8307659] (imputed)	N
1805	chr5	159911505	159911506	rs2961920	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	5q33.3	MIR146A	rs2961920-C	0.2347	3E-9				Affymetrix [15688218] (imputed)	N
1805	chr5	159911505	159911506	rs2961920	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic disease (asthma, hay fever or eczema)	106,772 European ancestry cases, 239,773 European ancestry controls	83,335 cases, 34,934 controls	5q33.3	NR	rs2961920-A	0.7653	3E-17		1.0559661	[1.04-1.07]	Affymetrix [15688218] (imputed)	N
1805	chr5	159913283	159913289	rs149990982	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	5q33.3	MIR146A	rs149990982-C	0.233405	1E-13		0.01956225	[0.014-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1805	chr5	159913283	159913289	rs149990982	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	5q33.3	MIR146A	rs149990982-C	0.233425	5E-14		0.019851906	[0.015-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1805	chr5	159914239	159914240	rs4921290	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	5q33.3	SLU7/ATP10B	rs4921290-A	0.759115	8E-12		1.0491184	[1.03479053213545-1.06364461148588]	NR [9572556] (imputed)	N
1805	chr5	159914239	159914240	rs4921290	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	5q33.3	NR	rs4921290-A	0.7659	1E-16		1.0602206	[1.05-1.07]	Affymetrix [15688218] (imputed)	N
1805	chr5	159914239	159914240	rs4921290	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic rhinitis	18,915 European ancestry cases, 239,773 European ancestry controls	NA	5q33.3	MIR146A	rs4921290-A	0.7691	6E-11		1.0915838	[1.06-1.12]	Affymetrix [15688218] (imputed)	N
1805	chr5	159914664	159914665	rs17057868	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (adrenergics, inhalants)	28,880 European ancestry cases, 147,565 European ancestry controls	NA	5q33.3	hsa-mir-146a	rs17057868-C	0.233336	4E-8		0.05821797	[0.037-0.079] unit decrease	Affymetrix [7288503] (imputed)	N
1805	chr5	159914664	159914665	rs17057868	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	5q33.3		rs17057868-?	NR	1E-15				NR [~ 8900000] (imputed)	N
1805	chr5	159918334	159918335	rs61665417	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	5q33.3	SLU7, ATP10B	rs61665417-C	0.71	1E-12				NR [> 9500000] (imputed)	N
1805	chr5	159928875	159928876	rs4921293	26362759	Rothwell S	2015-09-11	Ann Rheum Dis	Dense genotyping of immune-related loci in idiopathic inflammatory myopathies confirms HLA alleles as the strongest genetic risk factor and suggests different genetic background for major clinical subgroups.	Dermatomyositis or juvenile dermatomyositis	879 European dermatomyositis cases, 15,651 European juvenile dermatomyositis ancestry controls		5q34	PTTG1, ATP10B	rs4921293-G		8E-6		1.21	[1.11-1.31]	Illumina [90536]	N
1805	chr5	159972020	159972021	rs1592749	20014019	Dubinsky MC	2010-08-01	Inflamm Bowel Dis	Genome wide association (GWA) predictors of anti-TNFalpha therapeutic responsiveness in pediatric inflammatory bowel disease.	Response to anti-TNF alpha therapy in inflammatory bowel disease	94 pediatric cases	NA	5q34	intergenic	rs1592749-?	NR	1E-6		5.949	[NR]	Illumina [301742]	N
1805	chr5	159984491	159984492	rs4921301	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	5q34	NR	rs4921301-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1805	chr5	159984491	159984492	rs4921301	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	5q34		rs4921301-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1806	chr5	160104067	160104068	rs151003482	32157568	Strupp M	2020-03-10	Cerebellum	A Variation in FGF14 Is Associated with Downbeat Nystagmus in a Genome-Wide Association Study.	Idiopathic downbeat nystagmus	106 European ancestry cases, 2,609 European ancestry controls	NA	5q34	ATP10B	rs151003482-A	0.017	6E-6		6.04	[2.77-13.21]	Illumina [7759885] (imputed)	N
1807	chr5	160220267	160220268	rs10037124	32572145	Kawafune K	2020-06-22	J Hum Genet	Strong association between the 12q24 locus and sweet taste preference in the Japanese population revealed by genome-wide meta-analysis.	Sweet taste preference	12,312 Japanese ancestry individuals	NA	5q34	ATP10B	rs10037124-G	0.29	3E-6	(LMM)	0.057	[0.033-0.081] unit decrease	Illumina [5299861] (imputed)	N
1807	chr5	160222042	160222043	rs4552669	32572145	Kawafune K	2020-06-22	J Hum Genet	Strong association between the 12q24 locus and sweet taste preference in the Japanese population revealed by genome-wide meta-analysis.	Sweet taste preference	12,312 Japanese ancestry individuals	NA	5q34	ATP10B	rs4552669-A	0.699	5E-7		0.061	[0.037-0.085] unit increase	Illumina [5299861] (imputed)	N
1807	chr5	160286299	160286300	rs4921166	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	CTACK levels	3,631 Finnish ancestry individuals	NA	5q34	NR	rs4921166-C	NR	9E-6		0.5211	[0.29-0.75] SD units decrease	NR [10700000] (imputed)	N
1808	chr5	160303969	160303970	rs149126334	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Tumor necrosis factor alpha levels	3,454 Finnish ancestry individuals	NA	5q34	NR	rs149126334-G		5E-6		0.1344	[0.077-0.192] SD units increase	NR [10700000] (imputed)	N
1808	chr5	160326887	160326888	rs10780120	33693626	Jamieson SE	2021-03-09	Clin Infect Dis	Common and rare genetic variants that could contribute to severe otitis media in an Australian Aboriginal population.	Otitis media	21 Martu ancestry cases, 370 Martu ancestry controls	NA	5q34		rs10780120-G	0.17	3E-6				Illumina [6724284] (imputed)	N
1808	chr5	160331909	160331910	rs9790919	29855537	Hirata T	2018-05-31	Sci Rep	Japanese GWAS identifies variants for bust-size, dysmenorrhea, and menstrual fever that are eQTLs for relevant protein-coding or long non-coding RNAs.	Menstruation quality of life impact (aggressiveness)	899 Japanese ancestry female cases, 4,835 Japanese ancestry female controls	1,030 Japanese ancestry female cases, 4,584 Japanese ancestry female controls	5q34	NR	rs9790919-A	0.154318579	2E-6		0.24943858	[0.15-0.35] unit decrease	Affymetrix [536506]	N
1809	chr5	160469638	160469639	rs17504106	26114229	Ashley-Koch AE	2015-06-12	J Affect Disord	Genome-wide association study of posttraumatic stress disorder in a cohort of Iraq-Afghanistan era veterans.	Post-traumatic stress disorder	949 non-Hispanic black individuals, 759 European ancestry individuals	NA	5q34	intergenic	rs17504106-?	NR	5E-6	AA	2.97	[NR]	Illumina [up to 5616481] (imputed)	N
1809	chr5	160540000	160540001	rs60326182	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference	1,254 whole genome sequenced European ancestry individuals, 3,074 whole genome sequenced individuals, 29,716 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 701 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,050 Mylopotamos (founder/genetic isolate) individuals, 883 Pomak (founder/genetic isolate) individuals	205,909 European ancestry individuals	5q34	AC022120.1	rs60326182-A	0.1588	8E-6		0.0495	[0.028-0.071] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1810	chr5	160624457	160624458	rs164368	26169365	Huang KC	2015-07-14	BMC Complement Altern Med	Susceptible gene of stasis-stagnation constitution from genome-wide association study related to cardiovascular disturbance and possible regulated traditional Chinese medicine.	Yu-Zhi constitution type in type 2 diabetes	539 non-aboriginal Taiwanese ancestry low Yu-Zhi score individuals, 408 non-aboriginal Taiwanese ancestry high Yu-Zhi score individuals	NA	5q34	Intergenic	rs164368-T	0.785	6E-6	(Genotype model)	1.12	[0.89-1.40]	Illumina [508761]	N
1810	chr5	160684730	160684731	rs114811931	28043905	Nicoletti P	2016-12-30	Gastroenterology	Association of Liver Injury From Specific Drugs, or Groups of Drugs, With Polymorphisms in HLA and Other Genes in a Genome-Wide Association Study.	Drug-induced liver injury (diclofenac)	67 European ancestry cases, 10,588 European ancestry controls	NA	5q34	NR	rs114811931-?	NR	3E-9		6.59	3.54-12.28	Illumina [505740] (imputed)	N
1811	chr5	160701328	160701329	rs17457384	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Perceived intensity of sweet substances	2,443 European ancestry twins	NA	5q34	GABRB2	rs17457384-T	0.95	4E-6		0.32	[0.16-0.48] unit increase	Illumina [4001140] (imputed)	N
1811	chr5	160705004	160705005	rs640476	29747637	Li JQ	2018-05-10	BMC Med Genomics	Genome-wide association study identifies two loci influencing plasma neurofilament light levels.	Plasma neurofilament light levels	176 European ancestry mild cognitive impairment cases, 172 European ancestry Alzheimer's disease cases, 179 European ancestry controls	NA	5q34	GABRB2	rs640476-G	0.297	7E-6			NR NR decrease	Illumina [301687]	N
1811	chr5	160707580	160707581	rs602310	32844198	Dumitrescu L	2020-08-01	Brain	Genetic variants and functional pathways associated with resilience to Alzheimer's disease.	Combined resilience (covariance of educational attainment with residual cognitive resilience)	5,108 European ancestry individuals (unimpaired cognition, mild cognitive impairment or Alzheimer's disease)	NA	5q34	NR	rs602310-?	0.1574	2E-6		0.048079	[0.028-0.068] unit decrease	Affymetrix, Illumina [4840740] (imputed)	N
1811	chr5	160756067	160756068	rs60138750	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	5q34	GABRB2	rs60138750-T	NR	7E-6	(AA)			Illumina [up to 11995908] (imputed)	N
1812	chr5	160836619	160836620	rs1946247	31194737	Johnston KJA	2019-06-13	PLoS Genet	Genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	387,649 British ancestry individuals	NA	5q34	GABRB2	rs1946247-T	0.1389	5E-8		0.019	[0.012-0.026] unit decrease	NR [NR]	N
1812	chr5	160890323	160890323	rs137863733	33830993	Johnston KJA	2021-04-08	PLoS Genet	Sex-stratified genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	387,649 British ancestry individuals	NA	5q34	GABRB2	rs137863733-?	NR	8E-10			[NR]	NR [NR] (imputed)	N
1812	chr5	160911967	160911968	rs6881515	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	5q34		rs6881515-T	0.731	5E-11		0.009	[0.007-0.011] unit increase	NR [NR] (imputed)	N
1812	chr5	160911967	160911968	rs6881515	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	5q34	Intergenic	rs6881515-T	0.7315	4E-8	(MTAG)	0.0081	[0.0052-0.011] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1812	chr5	160918446	160918447	rs62381574	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	5q34	Intergenic	rs62381574-A	0.2629	4E-10	(MTAG)	0.0117	[0.008-0.0154] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1813	chr5	160988538	160988538	rs148306575	34586716	Chen J	2021-09-29	Mol Genet Genomic Med	Heritability and genome-wide association study of blood pressure in Chinese adult twins.	Pulse pressure	137 Chinese ancestry twins	NA	5q34		rs148306575-?	NR	1E-7				Illumina [7401356] (imputed)	N
1813	chr5	160995759	160995760	rs72815554	33539483	Li Z	2021-02-04	PLoS One	Bivariate genome-wide association study (GWAS) of body mass index and blood pressure phenotypes in northern Chinese twins.	Systolic blood pressure and diastolic blood pressure (bivariate analysis)	274 Chinese ancestry dizygotic twins	NA	5q34	GABRB2	rs72815554-?	NR	8E-6				Illumina [7401356] (imputed)	N
1813	chr5	161018270	161018271	rs11956866	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	5q34	NR	rs11956866-G	0.567	2E-11		0.00731806	[0.0052-0.0094] unit decrease	NR [9732723] (imputed)	N
1813	chr5	161018270	161018271	rs11956866	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	5q34	NR	rs11956866-G	0.567	8E-9		0.014838167	[0.0098-0.0199] unit decrease	NR [~ 10000000] (imputed)	N
1813	chr5	161077337	161077338	rs72817408	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		GABRA6	rs72817408-?	NR	4E-8	(female)	1.20785	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1815	chr5	161278337	161278338	rs6883877	28077804	Ben-Avraham D	2017-01-10	Aging (Albany NY)	The complex genetics of gait speed: genome-wide meta-analysis approach.	Gait speed in old age	31,478 European ancestry older adults	2,588 European ancestry older adults	5q34	GABRA1	rs6883877-?	NR	2E-6		0.0249	[0.015-0.035] m/sec decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1815	chr5	161291419	161291420	rs114311794	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	5q34	NR	rs114311794-?	NR	8E-6		4.469	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1815	chr5	161297794	161297795	rs6866984	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	5q34	NR	rs6866984-A	0.17	3E-7		0.1159	[0.071-0.16] unit decrease	Illumina [11133794] (imputed)	N
1816	chr5	161390157	161390158	rs115278147	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q34	NR	rs115278147-C	0.01045	4E-10	(ACSL4)	0.1245	NR unit increase	Illumina [1671387] (imputed)	N
1816	chr5	161401601	161401601	rs11393099	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	5q34		rs11393099-CT	NR	1E-8		0.0146	[0.0095-0.0197] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
1816	chr5	161402449	161402450	rs186382941	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		LINC01202	rs186382941-?	NR	3E-10		2.0025	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1816	chr5	161415691	161415692	rs539733084	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	5q34	NR	rs539733084-?	NR	5E-6		4.554	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1816	chr5	161427555	161427556	rs72819393	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		LINC01202	rs72819393-?	NR	4E-8	(female)	1.21403	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1816	chr5	161432130	161432130	rs201601822	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		GABRG2	rs201601822-?	NR	3E-8	(female)	1.22275	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1816	chr5	161476851	161476852	rs184899398	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		GABRG2	rs184899398-?	NR	2E-11		1.55768	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1817	chr5	161491386	161491387	rs209345	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	5q34	GABRA1, GABRG2	rs209345-T	0.08	6E-7	(EA)	0.2435	[0.15-0.34] unit increase	Illumina [~ 9000000] (imputed)	N
1817	chr5	161508727	161508728	rs209348	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	5q34	GABRG2	rs209348-T	0.502	3E-6		0.011	NR unit decrease	Illumina [NR] (imputed)	N
1817	chr5	161541997	161541998	rs75237097	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	5q34	GABRG2	rs75237097-T	NR	5E-6	(AA)			Illumina [up to 11995908] (imputed)	N
1817	chr5	161541997	161541998	rs75237097	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	5q34	GABRG2	rs75237097-T	NR	5E-6				Illumina [up to 11995908] (imputed)	N
1817	chr5	161604253	161604254	rs77370934	28030426	Mahmoudpour SH	2017-03-27	Pharmacogenet Genomics	Meta-analysis of genome-wide association studies on the intolerance of angiotensin-converting enzyme inhibitors.	Angiotensin-converting enzyme inhibitor intolerance	972 European ancestry intolerant individuals, 4,189 European ancestry tolerant individuals	NA	5q34	GABRG2	rs77370934-G	0.037258	8E-9		3.166316	[2.141682-4.681161]	Affymetrix, Illumina [NR] (imputed)	N
1818	chr5	161678798	161678799	rs11949046	33987465	Alfradique-Dunham I	2021-01-28	Neurol Genet	Genome-Wide Association Study Meta-Analysis for Parkinson Disease Motor Subtypes.	Parkinson's disease motor subtype (tremor dominant vs postural instability/gait difficulty)	1,570 European ancestry tremor dominant cases, 1,259 European ancestry postural instability/gait difficulty cases	NA	5q34	GABRG2	rs11949046-T	0.89	2E-6		0.54	[0.32-0.76] unit increase	Illumina [12910578] (imputed)	N
1819	chr5	161826192	161826193	rs79243092	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1b levels	8,243 Finnish ancestry individuals	NA	5q34	NR	rs79243092-C	NR	7E-6		0.2049	[0.12-0.29] SD units increase	NR [10700000] (imputed)	N
1819	chr5	161836884	161836885	rs7718928	26379185	Garcia-Etxebarria K	2015-09-17	PLoS One	No Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity.	Severe influenza A (H1N1) infection	49 European ancestry severe cases, 549 European ancestry population controls	NA	5q34	GABRG2, CCNG1	rs7718928-?	0.0	2E-13				Affymetrix [547296]	N
1820	chr5	161939416	161939417	rs62397608	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	5q34	NR	rs62397608-?	NR	7E-6		4.489	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1820	chr5	161945574	161945575	rs56820633	33407418	Jonsson A	2021-01-06	BMC Med Genomics	Genome-wide association study of circulating levels of glucagon during an oral glucose tolerance test.	Glucagon levels in response to oral glucose tolerance test (decremental area under the curve for 0-30 minutes)	553 European ancestry individuals, 1,346 individuals	NA	5q34	GABRG2	rs56820633-A	0.096	3E-6		0.27	[0.16-0.38] unit increase	Illumina [NR] (imputed)	N
1820	chr5	161952416	161952417	rs114969140	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Alcohol consumption x experiences in childhood (felt loved by family member) interaction	41,648 European ancestry individuals	NA	5q34		rs114969140-?	NR	3E-8		2.1184	[1.37-2.87] unit decrease	Affymetrix [NR] (imputed)	N
1820	chr5	161992397	161992398	rs17060512	29356057	Du Z	2018-01-21	Prostate	Genetic risk of prostate cancer in Ugandan men.	Prostate cancer	560 Ugandan ancestry cases, 480 Ugandan ancestry controls	NA	5q34	NR	rs17060512-T	0.89	7E-6		2.32	[1.61-3.35]	Illumina [17125421] (imputed)	N
1820	chr5	161997489	161997490	rs10063408	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	5q34	intergenic	rs10063408-G	0.28	4E-6	(EA)	2.83	[2.38-3.28]	Illumina [905956]	N
1821	chr5	162019897	162019898	rs6879255	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	5q34	intergenic	rs6879255-G	0.29	8E-6				Illumina [905956]	N
1821	chr5	162083517	162083518	rs7711337	22843504	Anney R	2012-07-26	Hum Mol Genet	Individual common variants exert weak effects on the risk for autism spectrum disorders.	Autism	1,419 European ancestry cases from 1416 families	1,314 European ancestry cases from 1301 families	5q34	intergenic	rs7711337-?	NR	8E-7	(Spectrum, all)	1.22	[1.12-1.32]	Illumina [947233]	N
1821	chr5	162107378	162107379	rs6874604	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	5q34	NR	rs6874604-?	NR	2E-7		0.4952	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1821	chr5	162107378	162107379	rs6874604	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	5q34	NR	rs6874604-?	NR	3E-7		0.4305	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1822	chr5	162144453	162144454	rs2562326	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Periventricular white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	5q34	ARL2BPP5	rs2562326-A	0.5167	5E-6		0.0256	[0.015-0.037] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1822	chr5	162212403	162212404	rs1288213	29678681	Matana A	2018-04-18	Genomics	Genome-wide meta-analysis identifies novel gender specific loci associated with thyroid antibodies level in Croatians.	Plasma anti-thyroglobulin levels	1,596 Croatian ancestry women, 1,033 Croatian ancestry men	NA	5q34	CCNG1	rs1288213-A	NR	7E-7	(men)	0.2372945	[0.14-0.33] unit decrease	Illumina [5527232] (imputed)	N
1823	chr5	162351851	162351852	rs828758	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	5q34	NR	rs828758-G	NR	7E-6		0.008	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
1824	chr5	162398460	162398461	rs4274995	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Unilateral cleft lip and palate	205 Asian ancestry cases, 315 European ancestry cases, 692 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	5q34	NR	rs4274995-?	NR	7E-6		0.74	[0.69-0.79]	Illumina [539000] (imputed)	N
1824	chr5	162398460	162398461	rs4274995	29478026	Shahin MH	2018-02-24	J Am Heart Assoc	Genome-Wide Association Approach Identified Novel Genetic Predictors of Heart Rate Response to ?-Blockers.	Heart rate response to beta blockers (atenolol monotherapy)	228 European American hypertensive individuals, 146 African American hypertensive individuals	NA	5q34	NR	rs4274995-C	0.13	1E-6	(AA)	5.95	[3.68-8.22] bpm increase	Illumina [at least 1100000] (imputed)	N
1824	chr5	162420387	162420388	rs189776108	33381925	Buchanan VL	2020-12-30	Pediatr Obes	Genome-wide association study identifying novel variant for fasting insulin and allelic heterogeneity in known glycemic loci in Chilean adolescents: The Santiago Longitudinal Study.	Fasting glucose	543 Chilean individuals	NA	5q34	RP11-541P9.3	rs189776108-T	0.05	5E-6		5.88	[3.37-8.39] unit increase	Illumina [NR] (imputed)	N
1825	chr5	162585644	162585645	rs12187751	25866641	Xu W	2015-03-19	Biomark Res	A genome wide association study on Newfoundland colorectal cancer patients' survival outcomes.	Survival in microsatellite instability low/stable colorectal cancer	431 European ancestry cases	NA	5q34	intergenic	rs12187751-?		3E-6	(overall survival)	2.48	[1.70-3.64]	Illumina [729737]	N
1825	chr5	162604152	162604153	rs13161806	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		AC113414.1	rs13161806-?	NR	8E-10		3.0185	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1826	chr5	162707343	162707344	rs148114323	32472697	Verma SS	2020-05-30	Clin Pharmacol Ther	Genome-wide association study of platelet reactivity and cardiovascular response in patients treated with clopidogrel: a study by the International Clopidogrel Pharmacogenomics Consortium (ICPC).	Platelet reactivity in response to clopidogrel treatment	2,592 European ancestry individuals	NA	5q34	intergenic	rs148114323-?	0.01	8E-6	(adjusted for CYP2C19*2)	0.78	NR unit decrease	Illumina [5009928] (imputed)	N
1826	chr5	162738837	162738838	rs982228	33040646	Aherrahrou R	2020-10-12	Circ Res	Genetic Regulation of Atherosclerosis-Relevant Phenotypes in Human Vascular Smooth Muscle Cells.	Aortic vascular smooth muscle cell proliferation in response to IL-1 beta	69 European ancestry individuals, 64 Hispanic/Latin American individuals, 12 African ancestry individuals, 6 East Asian ancestry individuals	NA	5q34	CCNG1	rs982228-?	NR	3E-8		0.37	[0.25-0.49] unit decrease	Illumina [6315002] (imputed)	N
1827	chr5	162808689	162808690	rs56673861	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	5q34	CCNG1	rs56673861-T	0.7229	9E-9	(Cer d16:1/24:0)	0.1131	[0.073-0.153] unit decrease	Illumina [~ 47000000] (imputed)	N
1827	chr5	162882701	162882702	rs2431752	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	5q34	NR	rs2431752-A	0.10667400000000005	4E-14		0.0101692	[0.0075-0.0128] unit increase	Affymetrix [16582909] (imputed)	N
1827	chr5	162882701	162882702	rs2431752	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	5q34	NR	rs2431752-A	0.10629699999999997	8E-10		0.010967	[0.0073-0.0146] unit increase	Affymetrix [16582621] (imputed)	N
1827	chr5	162882701	162882702	rs2431752	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	5q34	NR	rs2431752-A	0.10667400000000005	2E-10		0.009344	[0.0064-0.0123] unit increase	Affymetrix [16582965] (imputed)	N
1827	chr5	162882701	162882702	rs2431752	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	5q34	NR	rs2431752-A	0.10629699999999997	8E-8		0.010161	[0.0062-0.0141] unit increase	Affymetrix [16582614] (imputed)	N
1828	chr5	162949419	162949420	rs729353	34642315	Ferreiro-Iglesias A	2021-10-12	Nat Commun	Germline determinants of humoral immune response to HPV-16 protect against oropharyngeal cancer.	Human papilloma virus 16 negative oropharyngeal cancer	565 European ancestry cases, 5,256 European ancestry controls	NA	5q34		rs729353-A	NR	2E-7		1.4		Illumina [7574753] (imputed)	N
1828	chr5	162998514	162998515	rs294588	22773346	Edwards DR	2012-07-07	Age (Dordr)	Linkage and association of successful aging to the 6q25 region in large Amish kindreds.	Aging	263 Amish individuals aged 80 years or older	NA	5q34	LOC391844, MAT2B	rs294588-?	0.26	1E-6				Affymetrix [630309]	N
1828	chr5	163026237	163026238	rs17062018	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	5q34	NR	rs17062018-?	NR	1E-6		4.843	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1829	chr5	163082626	163082627	rs12522131	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	5q34	NA	rs12522131-T		2E-8		0.0131584	[0.0086-0.0177] unit increase	Illumina [13288253] (imputed)	N
1829	chr5	163085981	163085982	rs158852	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	5q34		rs158852-G	0.402	2E-9		0.007	[0.005-0.009] unit decrease	NR [NR] (imputed)	N
1829	chr5	163086502	163086502	rs199905939	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage Migration Inhibitory Factor levels	3,494 Finnish ancestry individuals	NA	5q34	NR	rs199905939-TA	NR	1E-6		0.217	[0.13-0.3] SD units increase	NR [10700000] (imputed)	N
1829	chr5	163087084	163087085	rs12655486	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	5q34	NR	rs12655486-C	0.497	2E-9		0.00650543	[0.0044-0.0086] unit increase	NR [9732723] (imputed)	N
1829	chr5	163100679	163100680	rs292404	24665060	Argos M	2014-03-24	J Med Genet	Genome-wide association study of smoking behaviours among Bangladeshi adults.	Smoking initiation	754 Bangladeshi ancestry never smoker males, 2,565 Bangladeshi ancestry never smoker females, 1,837 Bangladeshi ancestry ever smoker males, 198 Bangladeshi ancestry ever smoker females	NA	5q34	LOC100419716, MAT2B	rs292404-?		2E-6	(males)			Illumina [1211988] (imputed)	N
1830	chr5	163204454	163204455	rs62395170	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	5q34	RNU6-168P	rs62395170-C	0.9891	6E-6		0.4697	[0.27-0.67] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1830	chr5	163268100	163268101	rs290119	32119686	Dahlin A	2020-03-02	PLoS One	Genome-wide interaction study reveals age-dependent determinants of responsiveness to inhaled corticosteroids in individuals with asthma.	Adverse response to inhaled corticosteroid treatment x age interaction in asthma	407 European ancestry cases, 376 European ancestry controls	287 European ancestry cases, 251 European ancestry controls	5q34	NR	rs290119-A	NR	6E-8		2.38	[1.6-3.53]	Affymetrix, Illumina [8589102] (imputed)	N
1830	chr5	163268305	163268306	rs290122	32119686	Dahlin A	2020-03-02	PLoS One	Genome-wide interaction study reveals age-dependent determinants of responsiveness to inhaled corticosteroids in individuals with asthma.	Adverse response to inhaled corticosteroid treatment x age interaction in asthma	407 European ancestry cases, 376 European ancestry controls	287 European ancestry cases, 251 European ancestry controls	5q34	NR	rs290122-T	NR	6E-8		2.38	[1.6-3.53]	Affymetrix, Illumina [8589102] (imputed)	N
1830	chr5	163268786	163268786	rs58836160	32119686	Dahlin A	2020-03-02	PLoS One	Genome-wide interaction study reveals age-dependent determinants of responsiveness to inhaled corticosteroids in individuals with asthma.	Adverse response to inhaled corticosteroid treatment x age interaction in asthma	407 European ancestry cases, 376 European ancestry controls	287 European ancestry cases, 251 European ancestry controls	5q34	NR	rs58836160-TA	NR	6E-8		2.38	[1.6-3.53]	Affymetrix, Illumina [8589102] (imputed)	N
1830	chr5	163309738	163309739	rs78098071	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage Migration Inhibitory Factor levels	3,494 Finnish ancestry individuals	NA	5q34	NR	rs78098071-C	NR	2E-7		0.4867	[0.31-0.67] SD units increase	NR [10700000] (imputed)	N
1831	chr5	163330707	163330708	rs2901796	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	5q34	MAT2B	rs2901796-A	0.3983	6E-10		1.0249051		Affymetrix [11880941] (imputed)	N
1832	chr5	163505868	163505869	rs13173656	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5q34	HMMR	rs13173656-?	NR	2E-6	(LPC 18:2)	0.27837557	[0.16-0.39] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1832	chr5	163511873	163511874	rs13163167	29594489	Apewokin S	2018-03-28	Support Care Cancer	Host genetic susceptibility to Clostridium difficile infections in patients undergoing autologous stem cell transplantation: a genome-wide association study.	Clostridium difficile infection in multiple myeloma	57 European ancestry cases, 589 European ancestry controls	NA	5q34	NR	rs13163167-?		9E-7				Illumina [892589]	N
1832	chr5	163521464	163521465	rs5010454	28115739	Smith AH	2017-01-24	Mol Psychiatry	Genome-wide association study of therapeutic opioid dosing identifies a novel locus upstream of OPRM1.	Methadone dose in opioid dependence	1,027 European American cases, 383 African American cases	NA	5q34	MAT2B	rs5010454-G	0.22432637075718015	4E-6	(AA)	0.4428	[0.25-0.63] unit increase	Illumina [at least 988306] (imputed)	N
1832	chr5	163527202	163527203	rs4868731	29206233	Shendre A	2017-12-04	PLoS One	Genome-wide admixture and association study of subclinical atherosclerosis in the Women's Interagency HIV Study (WIHS).	Common carotid intima-media thickness	682 Black non-Hispanic HIV-positive women, 288 Black non-Hispanic HIV-negative women	NA	5q34	MAT2B, LOC101927835	rs4868731-A	NR	5E-6		0.01651	[NR] unit increase	Illumina [1124301]	N
1832	chr5	163540854	163540855	rs78037902	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Ischemic stroke (cardioembolic)	174 Indian ancestry cases, 2,154 Indian ancestry controls	NA	5q34		rs78037902-?	NR	1E-6		1.0980729	[1.0572692095294-1.14045135284449]	Illumina [up to 7827597] (imputed)	N
1833	chr5	163631994	163631995	rs73338957	31497858	Dumitrescu L	2019-09-01	Brain	Sex differences in the genetic predictors of Alzheimer's pathology.	Neuritic plaque	2,701 European ancestry men, 3,275 European ancestry women	NA	5q34	MAT2B, LINC02143	rs73338957-C	0.146132	6E-6		0.421099	[0.24-0.6] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1833	chr5	163648350	163648351	rs12518453	28360221	Boger CA	2017-03-30	J Am Soc Nephrol	NFAT5 and SLC4A10 Loci Associate with Plasma Osmolality.	Blood osmolality (transformed sodium)	45,889 European ancestry individuals, up to 8,765 Asian Indian ancestry individuals, up to 7,215 African ancestry individuals	17,637 European ancestry individuals	5q34	NR	rs12518453-A	0.97	4E-7	(Asian)	0.39	[0.24-0.54] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1833	chr5	163657695	163657696	rs4623165	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	5q34		rs4623165-T	0.17	4E-10		6.26	z score increase	Affymetrix [9061022] (imputed)	N
1833	chr5	163680608	163680609	rs10515870	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 177)	19,670 European ancestry individuals	NA	5q34		rs10515870-?	NR	3E-11				NR [9705931] (imputed)	N
1834	chr5	163767330	163767331	rs73326661	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	5q34	Intergenic	rs73326661-A	0.981	1E-8	(AA)	0.085	unit increase	Illumina [NR] (imputed)	N
1834	chr5	163768537	163768538	rs142001454	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	5q34	Intergenic	rs142001454-C	0.99	1E-7	(AA)	0.107	unit increase	Illumina [NR] (imputed)	N
1835	chr5	163864278	163864279	rs57542984	30196971	Bray MJ	2018-09-01	Fertil Steril	Transethnic and race-stratified genome-wide association study of fibroid characteristics in African American and European American women.	Uterine fibroid size (maximum dimension)	1,301 African American or European ancestry female individuals	NA	5q34	MAT2B, TENM2	rs57542984-G	0.81	2E-9	(AA)	0.13	[0.09-0.17] unit increase	Affymetrix [up to 9596033] (imputed)	N
1835	chr5	163889279	163889280	rs6556756	17903305	Murabito JM	2007-09-19	BMC Med Genet	A genome-wide association study of breast and prostate cancer in the NHLBI's Framingham Heart Study.	Breast cancer	58 cases, 665 controls	NA	5q34	intergenic	rs6556756-?	NR	5E-7				Affymetrix [70897]	N
1835	chr5	163929544	163929545	rs149475046	31235810	Fung K	2019-06-24	Sci Rep	Genome-wide association study identifies loci for arterial stiffness index in 127,121 UK Biobank participants.	Arterial stiffness index	127,121 European ancestry individuals	NA	5q34	LOC10254	rs149475046-T	0.829	8E-6		0.024	[0.014-0.034] unit increase	Affymetrix [~ 10446505] (imputed)	N
1836	chr5	163973535	163973536	rs115586971	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		AC109466.1	rs115586971-?	NR	3E-13	(male)	5.59632	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1836	chr5	164055677	164055678	rs11745512	25378659	Lemaitre RN	2014-11-06	J Lipid Res	Genetic loci associated with circulating levels of very long-chain saturated fatty acids.	Very long-chain saturated fatty acid levels (fatty acid 22:0)	10,129 European ancestry individuals	NA	5q34	MAT2B	rs11745512-A	NR	6E-6		4.516	[NR] Z score increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1836	chr5	164056593	164056594	rs17065898	31932636	Hebbar P	2020-01-13	Sci Rep	Genome-wide association study identifies novel risk variants from RPS6KA1, CADPS, VARS, and DHX58 for fasting plasma glucose in Arab population.	Fasting plasma glucose	1,353 Arab ancestry individuals	1,176 Arab ancestry individuals	5q34	LOC105377703	rs17065898-C	NR	3E-6		4.694	[NR] unit increase	Illumina [632375]	N
1836	chr5	164056593	164056594	rs17065898	25378659	Lemaitre RN	2014-11-06	J Lipid Res	Genetic loci associated with circulating levels of very long-chain saturated fatty acids.	Very long-chain saturated fatty acid levels (fatty acid 24:0)	7,915 European ancestry individuals	NA	5q34	MAT2B	rs17065898-T	NR	9E-7		4.914	[NR] Z score increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1838	chr5	164238212	164238213	rs13157162	34620984	Skuladottir AT	2021-10-07	Commun Biol	A genome-wide meta-analysis uncovers six sequence variants conferring risk of vertigo.	Vertigo	48,072 European ancestry cases, 894,541 European ancestry controls	NA	5q34		rs13157162-C	NR	5E-6		1.14179		Affymetrix, Illumina [62056310] (imputed)	N
1838	chr5	164303175	164303176	rs145151025	34020725	Reddy JS	2021-05-21	Acta Neuropathol Commun	Genome-wide analysis identifies a novel LINC-PINT splice variant associated with vascular amyloid pathology in Alzheimer's disease.	Cerebral amyloid angiopathy x sex interaction in Alzheimer's disease	370 European ancestry men, 451 European ancestry women	NA		LINC01947	rs145151025-A	0.03	1E-5				Illumina [1679420] (imputed)	N
1838	chr5	164320118	164320119	rs2963118	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota (beta diversity)	858 Metropolitan French ancestry individuals	NA	5q34	NR	rs2963118-G	0.305	8E-7	(Bray-Curtis metric)	4.789264	NR z-score increase	Illumina [5293637] (imputed)	N
1838	chr5	164330816	164330817	rs2963120	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5q34	HMMR	rs2963120-?	NR	9E-6	(TAG 48:2)	0.14902028	[0.083-0.215] unit increase	Affymetrix [at least 2500000] (imputed)	N
1838	chr5	164346535	164346536	rs7734804	28051079	Warner SC	2017-01-04	Eur J Hum Genet	Genome-wide association scan of neuropathic pain symptoms post total joint replacement highlights a variant in the protein-kinase C gene.	Possible neuropathic pain in post total joint replacement surgery for osteoarthritis	109 cases, 504 controls.	NA	5q34	ODZ2, MAT2B	rs7734804-A	0.025	5E-6		4.64	[2.26-9.53]	Illumina [548381]	N
1839	chr5	164371678	164371679	rs62383728	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on self-rated math ability (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	5q34		rs62383728-?	NR	2E-8				NR [NR]	N
1839	chr5	164371678	164371679	rs62383728	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	5q34	NR	rs62383728-G	0.253327845807551	2E-8		0.00608355	[0.004-0.0082] unit increase	NR [NR]	N
1839	chr5	164394258	164394259	rs4868899	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5q34	HMMR	rs4868899-?	NR	7E-6	(TAG 50:3)	0.14966814	[0.084-0.215] unit increase	Affymetrix [at least 2500000] (imputed)	N
1839	chr5	164425093	164425094	rs139792624	34020725	Reddy JS	2021-05-21	Acta Neuropathol Commun	Genome-wide analysis identifies a novel LINC-PINT splice variant associated with vascular amyloid pathology in Alzheimer's disease.	Cerebral amyloid angiopathy x sex interaction in Alzheimer's disease	370 European ancestry men, 451 European ancestry women	NA		LOC102546299	rs139792624-G	0.03	1E-6				Illumina [1679420] (imputed)	N
1839	chr5	164425511	164425512	rs112053036	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Elusimicrobiota abundance in stool	5,959 Finnish ancestry individuals	NA	5q34		rs112053036-A	0.0208228	1E-9		0.0475328	[0.032-0.063] unit increase	Illumina [7980478] (imputed)	N
1839	chr5	164437146	164437147	rs4868748	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	5q34	NR	rs4868748-A	NR	8E-10		6.15	z score decrease	Affymetrix [10847151] (imputed)	N
1839	chr5	164438263	164438264	rs10476484	31972866	Nagel M	2020-01-23	Acta Psychiatr Scand	Genome-wide association study of the sensitivity to environmental stress and adversity (SESA) neuroticism cluster.	Sensitivity to environmental stress and adversity	351,827 European ancestry individuals	NA	5q34	NR	rs10476484-G	NR	2E-8		0.01476	NR unit increase	NR [7259579]	N
1839	chr5	164438263	164438264	rs10476484	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	5q34		rs10476484-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1839	chr5	164438263	164438264	rs10476484	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	5q34	NR	rs10476484-A	0.276744	6E-9		5.82	z score decrease	NR [10847151] (imputed)	N
1839	chr5	164440351	164440352	rs200696461	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interferon gamma levels	7,701 Finnish ancestry individuals	NA	5q34	NR	rs200696461-TA		5E-6		0.1632	[0.093-0.233] SD units decrease	NR [10700000] (imputed)	N
1839	chr5	164450692	164450693	rs6888114	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Neuroticism	170,911 European ancestry individuals	NA	5q34	NR	rs6888114-A	0.274	4E-7		0.019949215	[0.012-0.028] unit increase	Affymetrix [up to 6544775] (imputed)	N
1839	chr5	164465889	164465890	rs56118546	25993607	de Moor MH	2015-05-20	JAMA Psychiatry	Meta-analysis of Genome-wide Association Studies for Neuroticism, and the Polygenic Association With Major Depressive Disorder.	Neuroticism	Up to 627 Cilento (founder/genetic isolate) individuals, up to 2,296 Erasmus Rucphen (founder/genetic isolate) individuals, up to 1,650 Orcadian (founder/genetic isolate) individuals, up to 909 Vis (founder/genetic isolate) individuals, up to 58,179 European ancestry individuals	Up to 9,786 European ancestry individuals	5q34	NR	rs56118546-T	NR	1E-6		0.039	[0.023-0.055] unit decrease	Affymetrix, Illumina, Perlegen [6949614] (imputed)	N
1839	chr5	164467491	164467492	rs6556795	29495422	Xu H	2018-02-26	J Pers Med	A Genome-Wide Association Study of Idiopathic Dilated Cardiomyopathy in African Americans.	Idiopathic dilated cardiomyopathy	662 African American cases, 1,138 African American controls	NA	5q34	LOC102546299, CTB-7E3.1	rs6556795-G	0.602	1E-6		1.36	[1.18-1.57]	Affymetrix [up to 27494467] (imputed)	N
1839	chr5	164471699	164471700	rs114293326	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Neuroticism	170,911 European ancestry individuals	NA	5q34	NR	rs114293326-A	0.133	5E-7		0.025461495	[0.016-0.035] unit increase	Affymetrix [up to 6544775] (imputed)	N
1839	chr5	164473745	164473746	rs7737940	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fish- and plant-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	5q34	intergenic	rs7737940-?	NR	7E-9		0.0144732	[0.0096-0.0194] unit decrease	Affymetrix [25921788] (imputed)	N
1839	chr5	164475773	164475774	rs7714851	30626913	Amare AT	2019-01-09	Mol Psychiatry	Bivariate genome-wide association analyses of the broad depression phenotype combined with major depressive disorder, bipolar disorder or schizophrenia reveal eight novel genetic loci for depression.	Broad depression or major depressive disorder (self-reported)	9,240 European ancestry broad depression cases, 9,519 European ancestry broad depression controls, 51,258 European ancestry individuals, 75,607 European ancestry self-reported major depressive disorder cases, 231,747 European ancestry self-reported major depressive disorder controls	322,580 individuals	5q34	MAT2B	rs7714851-T	0.52	8E-16				Affymetrix, Illumina [at least 918921] (imputed)	N
1839	chr5	164475829	164475830	rs6556803	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	5q34	MAT2B	rs6556803-A	0.622	1E-8		0.0069	[0.0045-0.0093] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
1839	chr5	164477150	164477151	rs6896348	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	5q34	NR	rs6896348-G	0.513116347919501	2E-11		0.008911678	[0.0063-0.0115] unit increase	NR [NR]	N
1839	chr5	164481878	164481879	rs4077277	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	5q34	NR	rs4077277-T	0.51289567262066	6E-11		0.008233151	[0.0058-0.0107] unit increase	NR [NR]	N
1839	chr5	164483071	164483072	rs4339373	29728651	Li X	2018-04-27	Neuropsychopharmacology	Common variants on 6q16.2, 12q24.31 and 16p13.3 are associated with major depressive disorder.	Major depressive disorder	84,847 European ancestry cases,  241,266 European ancestry controls, 5,303 Han Chinese ancestry cases, 5,337 Han Chinese ancestry controls	2,659 European ancestry cases, 17,237 European ancestry controls	5q34	NR	rs4339373-T	0.51	2E-7		1.03	[NR]	Affymetrix, Illumina [at least 1235109] (imputed)	N
1839	chr5	164484947	164484948	rs4543289	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms	688,809 individuals	NA	5q34	NR	rs4543289-?		4E-8				NR [11140414]	N
1839	chr5	164484947	164484948	rs4543289	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Neuroticism	274,107 British ancestry individuals	NA	5q34	NR	rs4543289-?	NR	9E-6		1.0080645	[1.01-1.01]	NR [8968716] (imputed)	N
1839	chr5	164484947	164484948	rs4543289	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Help-seeking from a GP	113,262 British ancestry cases, 219,360 British ancestry controls	NA	5q34	NR	rs4543289-?	NR	7E-6		1.0235415	[1.01-1.03]	NR [5276842] (imputed)	N
1839	chr5	164484947	164484948	rs4543289	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	5q34	NR	rs4543289-G	0.524524795916666	1E-14		0.007099604	[0.0053-0.0089] unit increase	NR [NR]	N
1839	chr5	164484947	164484948	rs4543289	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depression	688,809 European ancestry individuals	NA	5q34	NR	rs4543289-T	NR	4E-8		5.502	z score decrease	Affymetrix [10847151] (imputed)	N
1839	chr5	164484947	164484948	rs4543289	27479909	Hyde CL	2016-08-01	Nat Genet	Identification of 15 genetic loci associated with risk of major depression in individuals of European descent.	Major depressive disorder	84,847 European ancestry cases, 241,266 European ancestry controls	45,773 European ancestry cases, 106,354 European ancestry controls	5q34	Intergenic	rs4543289-T	0.480069	1E-8		0.0322	[0.02-0.044] unit decrease	Illumina [1220000] (imputed)	N
1839	chr5	164486066	164486067	rs10035449	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	5q34	NR	rs10035449-C	0.5358	2E-7		0.0061	[0.0037-0.0085] unit increase	NR [7666894] (imputed)	N
1839	chr5	164487131	164487132	rs7721129	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	5q34	NR	rs7721129-A	NR	8E-9		5.765	z score increase	Affymetrix [10847151] (imputed)	N
1839	chr5	164488848	164488849	rs10434704	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Subjective well-being (MTAG)	388,538 European ancestry individuals	NA	5q34	NR	rs10434704-C	0.5289	5E-8		0.0101	[0.0066-0.0136] unit decrease	Illumina [NR] (imputed)	N
1839	chr5	164488848	164488849	rs10434704	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Neuroticism (MTAG)	168,105 European ancestry individuals	NA	5q34	NR	rs10434704-C	0.5325	1E-8		0.0159	[0.01-0.021] unit increase	Illumina [NR] (imputed)	N
1839	chr5	164488848	164488849	rs10434704	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms (MTAG)	354,862 European ancestry individuals	NA	5q34	NR	rs10434704-C	0.5245	6E-11		0.0139	[0.0098-0.018] unit increase	Illumina [NR] (imputed)	N
1839	chr5	164493779	164493780	rs72808038	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on cognitive performance (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	5q34		rs72808038-?	NR	2E-8				NR [NR]	N
1840	chr5	164502429	164502430	rs75276933	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		AC109466.1	rs75276933-?	NR	1E-10		1.94076	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1840	chr5	164516632	164516633	rs77338596	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on highest math class (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	5q34		rs77338596-?	NR	2E-8				NR [NR]	N
1840	chr5	164516632	164516633	rs77338596	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on educational attainment (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	5q34		rs77338596-?	NR	2E-8				NR [NR]	N
1840	chr5	164516632	164516633	rs77338596	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on average household income before tax (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	5q34		rs77338596-?	NR	3E-9				NR [NR]	N
1840	chr5	164516632	164516633	rs77338596	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on Townsend deprivation index (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	5q34		rs77338596-?	NR	1E-8				NR [NR]	N
1840	chr5	164522203	164522204	rs6873557	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	5q34	NR	rs6873557-G	0.524705476596638	1E-13		0.011233051	[0.0083-0.0142] unit increase	NR [NR]	N
1840	chr5	164523471	164523472	rs11135349	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	5q34		rs11135349-?	NR	3E-18		0.0234	unit decrease	NR [NR]	N
1840	chr5	164523471	164523472	rs11135349	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Major depressive disorder (MTAG)	at least 170,756 European ancestry cases, at least 329,443 European ancestry controls	NA	5q34	NR	rs11135349-A	0.4674	2E-10		0.02621972	[0.018-0.034] unit decrease	NR [NR]	N
1840	chr5	164523471	164523472	rs11135349	31926635	Coleman JRI	2019-11-01	Biol Psychiatry	The Genetics of the Mood Disorder Spectrum: Genome-wide Association Analyses of More Than 185,000 Cases and 439,000 Controls.	Bipolar disorder or major depressive disorder	164,933 European ancestry major depressive disorder cases, 20,352 European ancestry bipolar disorder cases, 439,741 European ancestry controls	NA	5q34	NR	rs11135349-C	NR	3E-11		1.0309278		NR [NR] (imputed)	N
1840	chr5	164523471	164523472	rs11135349	30718901	Howard DM	2019-02-04	Nat Neurosci	Genome-wide meta-analysis of depression identifies 102 independent variants and highlights the importance of the prefrontal brain regions.	Depression	118,811 European ancestry cases, 327,427 European ancestry controls, 127,552 cases, 233,763 controls	414,055 European ancestry cases, 892,299 European ancestry controls	5q34	NR	rs11135349-C	0.5287	2E-30		1.025641	[1.02-1.03]	NR [8098588] (imputed)	N
1840	chr5	164523471	164523472	rs11135349	29700475	Wray NR	2018-04-26	Nat Genet	Genome-wide association analyses identify 44 risk variants and refine the genetic architecture of major depression.	Depression	135,458 European ancestry cases, 344,901 European ancestry controls	NA	5q34	intergenic	rs11135349-C	0.52	1E-9		1.0309278	[1.02-1.04]	NR [9622763] (imputed)	N
1840	chr5	164530808	164530809	rs10045971	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms	354,862 European ancestry individuals	NA	5q34	NR	rs10045971-C	0.5285	1E-9		0.0145	[0.0098-0.0192] unit increase	Illumina [NR] (imputed)	N
1840	chr5	164548125	164548126	rs766120	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Lamb consumption	335,576 European ancestry individuals	NA	5q34	intergenic	rs766120-?	NR	2E-8		0.0141652	[0.0092-0.0191] unit decrease	Affymetrix [25921788] (imputed)	N
1840	chr5	164557953	164557954	rs2861089	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	5q34	NA	rs2861089-A	0.3806	2E-9		0.0105	[0.0072-0.0138] unit increase	NR [~ 27400000] (imputed)	N
1840	chr5	164576967	164576968	rs72817562	25993607	de Moor MH	2015-05-20	JAMA Psychiatry	Meta-analysis of Genome-wide Association Studies for Neuroticism, and the Polygenic Association With Major Depressive Disorder.	Neuroticism	Up to 627 Cilento (founder/genetic isolate) individuals, up to 2,296 Erasmus Rucphen (founder/genetic isolate) individuals, up to 1,650 Orcadian (founder/genetic isolate) individuals, up to 909 Vis (founder/genetic isolate) individuals, up to 58,179 European ancestry individuals	Up to 9,786 European ancestry individuals	5q34	NR	rs72817562-T	NR	2E-6		0.035	[0.019-0.051] unit increase	Affymetrix, Illumina, Perlegen [6949614] (imputed)	N
1840	chr5	164582119	164582120	rs10475748	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	5q34	NR	rs10475748-A	0.60182540066718	1E-13		0.007929967	[0.0058-0.01] unit increase	NR [NR]	N
1840	chr5	164582119	164582120	rs10475748	30289880	Qi G	2018-10-05	PLoS Genet	Heritability informed power optimization (HIPO) leads to enhanced detection of genetic associations across multiple traits.	Social science traits (pleiotropy) (HIPO component 1)	up to 630,791 European ancestry individuals	NA	5q34	NR	rs10475748-?	NR	2E-8				NR [2100000]	N
1840	chr5	164587778	164587779	rs11952053	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Anxiety	at least 23,606 European ancestry cases, at least 113,351 European ancestry controls	624,615 European ancestry cases, 1,310,854 European ancestry controls	5q34	CTC, 340A15.2	rs11952053-G	0.4036	4E-18		0.02005757	[0.015-0.025] unit decrease	NR [9417325] (imputed)	N
1840	chr5	164588816	164588817	rs10476497	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder	29,475 European ancestry cases, 63,482 European ancestry controls	NA	5q34	NR	rs10476497-A	0.534226	5E-6		1.072	[1.04-1.1]	Affymetrix [7791636] (imputed)	N
1840	chr5	164593554	164593555	rs2861139	31748690	Purves KL	2019-11-20	Mol Psychiatry	A major role for common genetic variation in anxiety disorders.	Lifetime anxiety disorder	25,453 European ancestry cases, 58,113 European ancestry controls	6,524 cases, 24001 controls	5q34	NR	rs2861139-C	0.62	3E-9	(EA)	0.13	[NR] unit increase	Illumina [NR] (imputed)	N
1840	chr5	164619354	164619355	rs13156646	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	5q34	MAT2B	rs13156646-C	0.3716	2E-9		0.014780401	[0.01-0.0196] unit increase	Affymetrix [11515109] (imputed)	N
1841	chr5	164631793	164631794	rs12153515	33888516	Zheng T	2021-04-22	Gut	Genome-wide analysis of 944 133 individuals provides insights into the etiology of haemorrhoidal disease.	Haemorrhoidal disease	218,920 European ancestry cases, 725,213 European ancestry controls	NA	5q34	intergenic	rs12153515-?	0.1274	7E-10		1.04	[1.03-1.05]	Affymetrix, Illumina [8494288] (imputed)	N
1841	chr5	164646151	164646152	rs143977447	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Typhoid fever	2,733 European ancestry cases, 346,689 European ancestry controls, 257 East Asian ancestry cases, 178,071 East Asian ancestry controls	NA	5q34		rs143977447-A	NR	1E-8		1.2871	[0.84-1.73] unit increase	Affymetrix, Illumina [20457818] (imputed)	N
1841	chr5	164646151	164646152	rs143977447	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Dysentery	2,733 European ancestry cases, 346,689 European ancestry controls, 411 East Asian ancestry cases, 178,071 East Asian ancestry controls	NA	5q34		rs143977447-A	NR	1E-8		1.2871	[0.84-1.73] unit increase	Affymetrix, Illumina [20457834] (imputed)	N
1841	chr5	164666480	164666481	rs564483817	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	5q34	NR	rs564483817-C	0.3761	3E-7		0.0062	[0.0038-0.0086] unit decrease	NR [7666894] (imputed)	N
1841	chr5	164710483	164710484	rs145591474	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q34	NR	rs145591474-T	0.01394	6E-9	(CNN2)	0.01717	NR unit increase	Illumina [1671387] (imputed)	N
1841	chr5	164710483	164710484	rs145591474	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q34	NR	rs145591474-T	0.01394	2E-9	(RSU1)	0.05178	NR unit increase	Illumina [1671387] (imputed)	N
1841	chr5	164741902	164741903	rs13174943	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	5q34	NA	rs13174943-G		2E-10		0.0116027	[0.008-0.0152] unit increase	Illumina [13288253] (imputed)	N
1842	chr5	164764086	164764087	rs1145652	21829377	Lemaitre RN	2011-07-28	PLoS Genet	Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Plasma omega-3 polyunsaturated fatty acid level (eicosapentaenoic acid)	8,866 European ancestry individuals	NA	5q34	MAT2B	rs1145652-A	NR	8E-8		0.04	[NR] % increase	Affymetrix, Illumina [NR]	N
1842	chr5	164769296	164769297	rs75433790	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	5q34	NR	rs75433790-?	NR	4E-8				Illumina [7760689] (imputed)	N
1842	chr5	164846120	164846121	rs34978547	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Large artery stroke	350 Indian ancestry cases, 2,154 Indian ancestry controls	NA	5q34		rs34978547-?	NR	7E-6		1.0475342	[1.02654334477653-1.06895437937159]	Illumina [up to 7827597] (imputed)	N
1843	chr5	164937365	164937366	rs116236449	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Measles	38,219 European ancestry cases, 47,279 European ancestry controls	NA	5q34	NR	rs116236449-?	NR	7E-6		3.1021	[1.49-4.71] unit decrease	Illumina [at least 560000] (imputed)	N
1843	chr5	164945043	164945044	rs34470775	30898391	Lawrenson K	2019-03-19	Gynecol Oncol	Genome-wide association studies identify susceptibility loci for epithelial ovarian cancer in east Asian women.	Epithelial ovarian cancer	3,238 East Asian ancestry cases, 4,083 East Asian ancestry controls	NA	5q34		rs34470775-?	NR	8E-6	(clearcell)	2.19		Illumina [11595112] (imputed)	N
1844	chr5	165063883	165063884	rs958994	20009918	Shrestha S	2010-01-01	AIDS	A genome-wide association study of carotid atherosclerosis in HIV-infected men.	Carotid atherosclerosis in HIV infection	177 European ancestry individuals	NA	5q34	intergenic	rs958994-G	0.27	8E-6	(common cIMT)			Illumina [311194]	N
1844	chr5	165096434	165096435	rs3909281	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	5q34		rs3909281-T	0.446	8E-11		0.008	[0.006-0.01] unit decrease	NR [NR] (imputed)	N
1844	chr5	165096434	165096435	rs3909281	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	5q34	NR	rs3909281-G	0.536	7E-16		0.0087641	[0.0066-0.0109] unit increase	NR [9732723] (imputed)	N
1844	chr5	165096434	165096435	rs3909281	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	5q34	NR	rs3909281-G	0.536	2E-16	(Conditioned on chr5:167614971, chr5:166989513)	0.021067193	[0.016-0.026] unit increase	NR [~ 10000000] (imputed)	N
1844	chr5	165107099	165107100	rs516732	25979521	de Jong K	2015-06-05	J Allergy Clin Immunol	Genome-wide interaction study of gene-by-occupational exposure and effects on FEV1 levels.	Forced expiratory volume in 1 second (occupational environmental exposures interaction)	12,400 individuals	1,436 individuals	5q34	ODZ2	rs516732-C	0.47	1E-7	Gases and fumes	121.6	[NR] unit decrease	Illumina [up to 221663]	N
1844	chr5	165117460	165117461	rs77421486	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	5q34	NR	rs77421486-C	NR	5E-6		1.1235955	[NR]	Illumina [7158791] (imputed)	N
1844	chr5	165132973	165132974	rs262741	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Lewy body disease	up to 3,526 individuals	NA	5q34	intergenic	rs262741-G	0.5416	5E-6	(Ordinal I)	0.2447	[0.14-0.35] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1845	chr5	165251963	165251964	rs409459	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	5q34	NA	rs409459-T		9E-10		0.014825	[0.01-0.02] unit increase	Illumina [13288253] (imputed)	N
1845	chr5	165255984	165255985	rs248276	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	5q34		rs248276-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1845	chr5	165262842	165262843	rs79509159	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q34	NR	rs79509159-G	0.0122	1E-10	(AGT)	0.09802	NR unit increase	Illumina [1671387] (imputed)	N
1845	chr5	165273158	165273159	rs115282024	30942860	Shin J	2019-04-03	J Clin Endocrinol Metab	Novel genetic locus of visceral fat and systemic inflammation.	Visceral fat	1589 French-Canadian ancestry individuals	NA	5q34	Intergenic	rs115282024-G	NR	3E-6	(adjusted for total body fat)	0.329	[0.19-0.47] unit decrease	Illumina [8511049] (imputed)	N
1846	chr5	165302876	165302877	rs114833727	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin I concentration	1,606 African American individuals	NA	5q34		rs114833727-?	NR	2E-6		0.42	[0.25-0.59] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1846	chr5	165362009	165362010	rs10077591	27922604	Yu H	2016-12-06	Mol Psychiatry	Common variants on 2p16.1, 6p22.1 and 10q24.32 are associated with schizophrenia in Han Chinese population.	Schizophrenia	4,384 Han Chinese ancestry cases and 5,770 Han Chinese ancestry controls	4,339 Han Chinese ancestry cases and 7,043 Han Chinese ancestry controls	5q34	TENM2	rs10077591-?		6E-7		1.09	[1.16-1.22]	Illumina [at least 473583] (imputed)	N
1846	chr5	165373209	165373210	rs26442	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	5q34	Intergenic	rs26442-G	0.7381	6E-10		0.0137	[0.0094-0.018] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1846	chr5	165374320	165374321	rs26443	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	5q34	Intergenic	rs26443-A	0.7365	1E-12	(MTAG)	0.0144	[0.01-0.018] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1846	chr5	165374320	165374321	rs26443	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	5q34	Intergenic	rs26443-A	0.7361	1E-9	(MTAG)	0.0114	[0.0077-0.0151] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1846	chr5	165374320	165374321	rs26443	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	5q34	Intergenic	rs26443-A	0.7283	2E-12	(MTAG)	0.0181	[0.013-0.023] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1846	chr5	165377698	165377699	rs9313296	20966902	Croteau-Chonka DC	2010-10-21	Obesity (Silver Spring)	Genome-wide association study of anthropometric traits and evidence of interactions with age and study year in Filipino women.	Weight	1,780 Filipino ancestry females	NA	5q34	intergenic	rs9313296-C	0.01	7E-7		10.0	[6.07-13.93] kg increase	Affymetrix [2073674] (imputed)	N
1846	chr5	165377698	165377699	rs9313296	20966902	Croteau-Chonka DC	2010-10-21	Obesity (Silver Spring)	Genome-wide association study of anthropometric traits and evidence of interactions with age and study year in Filipino women.	Waist circumference	1,779 Filipino ancestry females	NA	5q34	intergenic	rs9313296-C	0.01	6E-6		9.4	[5.35-13.45] cm increase	Affymetrix [2073674] (imputed)	N
1846	chr5	165391380	165391381	rs73352871	29077507	Chen H	2017-10-27	Am J Respir Cell Mol Biol	Multi-ethnic Meta-analysis Identifies RAI1 as a Possible Obstructive Sleep Apnea Related Quantitative Trait Locus in Men.	Obstructive sleep apnea trait (apnea hypopnea index)	677 African American women, 544 African American men, 115 Asian women, 113 Asian men, 1,825 European ancestry women, 3,902 European ancestry men,  7,492 Hispanic women, 5,065 Hispanic men	NA	5q34	Intergenic	rs73352871-C		6E-7	(men)	0.203	[NR] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1846	chr5	165396409	165396410	rs75836061	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	5q34	NR	rs75836061-A	NR	2E-8		5.621	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1846	chr5	165400888	165400889	rs112324393	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (processing speed) x major depressive disorder interaction (2df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	5q34		rs112324393-T	0.01	2E-8				NR [NR] (imputed)	N
1846	chr5	165400888	165400889	rs112324393	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (processing speed) x major depressive disorder interaction (1df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	5q34		rs112324393-T	0.01	3E-8		0.41	[0.018-0.802] unit increase	NR [NR] (imputed)	N
1846	chr5	165400888	165400889	rs112324393	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (executive function) x major depressive disorder interaction (2df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	5q34		rs112324393-T	0.01	4E-14				NR [NR] (imputed)	N
1846	chr5	165400888	165400889	rs112324393	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (executive function) x major depressive disorder interaction (1df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	5q34		rs112324393-T	0.01	2E-8		1.93	[1.26-2.6] unit decrease	NR [NR] (imputed)	N
1846	chr5	165403745	165403746	rs830233	27958378	Floyd JS	2016-12-13	Pharmacogenomics J	Large-scale pharmacogenomic study of sulfonylureas and the QT, JT and QRS intervals: CHARGE Pharmacogenomics Working Group.	QT interval (sulfonylurea treatment interaction)	2,095 European ancestry exposed individuals, 42,907 European ancestry unexposed individuals, 1,167 African American exposed individuals, 10,564 African American unexposed individuals, 794 Hispanic/Latino American exposed individuals, 14,330 Hispanic/Latino American unexposed individuals	NA	5q34	intergenic	rs830233-?	NR	3E-12	(AA)	16.3	[11.79-20.81] ms decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1846	chr5	165405677	165405678	rs830237	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	5q34	RPL7P20	rs830237-A	NR	1E-9		6.071	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1846	chr5	165408058	165408059	rs2591576	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	5q34	RPL7P20	rs2591576-T	NR	2E-10		0.018536655	[0.013-0.024] unit increase	Affymetrix [NR]	N
1846	chr5	165409176	165409177	rs153286	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	5q34	RPL7P20	rs153286-A	NR	5E-8		5.47	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1847	chr5	165427279	165427280	rs3843905	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	5q34	NR	rs3843905-T	0.403	3E-9		0.00655551	[0.0044-0.0087] unit decrease	NR [9732723] (imputed)	N
1847	chr5	165427279	165427280	rs3843905	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	5q34	NR	rs3843905-T	0.403	5E-9	(Conditioned on chr5:166063680, chr5:166778503, chr5:165096435, chr5:167614971, chr5:166989513)	0.01514584	[0.01-0.02] unit decrease	NR [~ 10000000] (imputed)	N
1847	chr5	165428978	165428979	rs78606339	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	5q34	NONE, TENM2	rs78606339-T	0.06	7E-7	(EA)	0.4614	[0.28-0.64] unit increase	Illumina [~ 9000000] (imputed)	N
1847	chr5	165460084	165460085	rs62383308	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	5q34	NR	rs62383308-G	0.9195	4E-8		1.0615711	[1.04-1.08]	Affymetrix, Illumina [NR] (imputed)	N
1847	chr5	165473193	165473194	rs830383	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	5q34	NR	rs830383-A	0.363817	5E-11		0.042900216	[0.03-0.056] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1847	chr5	165473193	165473194	rs830383	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	5q34	Intergenic	rs830383-A	0.3733	4E-11		0.0195	[0.014-0.025] unit increase	Affymetrix, Illumina [10100000] (imputed)	N
1847	chr5	165473193	165473194	rs830383	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	5q34	NR	rs830383-A	NR	4E-8		5.512	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1847	chr5	165473193	165473194	rs830383	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	5q34	RPL7P20	rs830383-A	NR	2E-8		0.016830707	[0.011-0.023] unit increase	Affymetrix [NR]	N
1847	chr5	165479748	165479749	rs830386	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	5q34	RPL7P20	rs830386-A	NR	4E-10		6.263	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1847	chr5	165495490	165495491	rs31771	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	5q34	RPL7P20	rs31771-T	NR	5E-10		0.019114267	[0.013-0.025] unit increase	Affymetrix [NR]	N
1847	chr5	165496437	165496438	rs31770	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Verbal-numerical reasoning	171,304 British ancestry individuals	NA	5q34		rs31770-?	NR	4E-9				NR [7857346] (imputed)	N
1847	chr5	165496437	165496438	rs31770	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	5q34	RPL7P20	rs31770-C	NR	3E-8		5.569	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1847	chr5	165498278	165498279	rs31768	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	5q34	NR	rs31768-A	NR	3E-9		5.952	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1847	chr5	165505116	165505117	rs148759363	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q34	NR	rs148759363-T	0.01568	6E-9	(DCN)	0.05218	NR unit increase	Illumina [1671387] (imputed)	N
1847	chr5	165516847	165516848	rs114821210	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	5q34	NR	rs114821210-?	NR	5E-7	(AA)	15.66653	[9.66-21.68] unit decrease	Affymetrix [at least 600000] (imputed)	N
1847	chr5	165516847	165516848	rs114821210	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	5q34	NR	rs114821210-?	NR	5E-7		15.695	NR unit increase	Affymetrix [at least 600000] (imputed)	N
1848	chr5	165551699	165551700	rs114101629	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	5q34	NR	rs114101629-?	NR	2E-6		14.797	NR unit increase	Affymetrix [at least 600000] (imputed)	N
1848	chr5	165554274	165554275	rs74956835	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	5q34	NR	rs74956835-?	NR	9E-6		14.755	NR unit increase	Affymetrix [at least 600000] (imputed)	N
1848	chr5	165565907	165565908	rs75729550	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	5q34	NR	rs75729550-?	NR	3E-6		14.945	NR unit increase	Affymetrix [at least 600000] (imputed)	N
1848	chr5	165602211	165602212	rs11959032	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,963 Sub-Saharan African ancestry females	NA	5q34		rs11959032-C	0.979687	3E-7		0.0477468	[0.029-0.066] unit decrease	Illumina [13900000] (imputed)	N
1848	chr5	165660639	165660640	rs34057381	31311600	Namjou B	2019-07-17	BMC Med	GWAS and enrichment analyses of non-alcoholic fatty liver disease identify new trait-associated genes and pathways across eMERGE Network.	Liver fibrosis in non-alcoholic fatty liver disease	235 European ancestry individuals	NA	5q34	intergenic	rs34057381-T	0.329004	9E-6		0.458781	[0.26-0.66] unit decrease	NR [7263501] (imputed)	N
1849	chr5	165707484	165707485	rs13170956	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	5q34		rs13170956-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1849	chr5	165719649	165719650	rs955423	25133637	Scannell Bryan M	2014-08-18	PLoS One	Genome-wide association studies and heritability estimates of body mass index related phenotypes in Bangladeshi adults.	Body mass index	2,763 Bangladeshi ancestry females, 2,591 Bangladeshi ancestry males	NA	5q34	TENM2	rs955423-A	0.61	3E-7		0.335	[0.21-0.46] kg/m2 increase	Illumina [1208102] (imputed)	N
1849	chr5	165762802	165762803	rs13182155	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	5q34		rs13182155-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1850	chr5	165809433	165809434	rs116511119	30185882	Zeiger AM	2018-09-05	Sci Rep	Genetic Determinants of Telomere Length in African American Youth.	Telomere length	492 African American children and adolescents	NA	5q34	LINC01947	rs116511119-G	0.051	2E-6		0.249	[0.147-0.351] unit increase	Affymetrix [7519176] (imputed)	N
1850	chr5	165832500	165832501	rs1696923	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	5q34		rs1696923-T	0.26	1E-9		6.08	z score increase	Affymetrix [9061022] (imputed)	N
1850	chr5	165858267	165858268	rs180834368	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	5q34	CTB-63M22.1	rs180834368-A	0.9922	6E-7		0.2651	[0.16-0.37] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1850	chr5	165893942	165893943	rs2861809	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	5q34		rs2861809-?	NR	6E-8				NR [~ 8900000] (imputed)	N
1850	chr5	165901445	165901446	rs1349359	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	5q34	NR	rs1349359-A	0.43813100000000005	2E-8		0.0173028	[0.011-0.023] unit increase	Affymetrix [16577313] (imputed)	N
1850	chr5	165932047	165932048	rs2961853	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	5q34		rs2961853-C	NR	7E-9		0.0085	[0.0056-0.0114] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1850	chr5	165932047	165932048	rs2961853	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	5q34	NR	rs2961853-C	0.46867099999999995	3E-10		0.0191152	[0.013-0.025] unit increase	Affymetrix [16577424] (imputed)	N
1850	chr5	165932047	165932048	rs2961853	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	5q34		rs2961853-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1851	chr5	165939327	165939328	rs2923177	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (late vs. average onset voice breaking)	11,334 European ancestry late onset individuals, 172,138 European ancestry average onset individuals	NA	5q34		rs2923177-T	NR	3E-7		0.00408878	[0.0025-0.0056] years increase	NR [7400000] (imputed)	N
1851	chr5	165939327	165939328	rs2923177	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (late vs. average onset facial hair)	26,066 European ancestry late onset individuals, 161,175 European ancestry average onset individuals	NA	5q34		rs2923177-T	NR	2E-8		0.00649823	[0.0043-0.0087] years increase	NR [7400000] (imputed)	N
1851	chr5	165939327	165939328	rs2923177	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (age at voice breaking MTAG)	205,354 European ancestry individuals	NA	5q34		rs2923177-T	NR	3E-12		0.022677278	[0.016-0.029] years increase	NR [7400000] (imputed)	N
1851	chr5	165945862	165945863	rs10042371	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	5q34	NA	rs10042371-?		5E-12				Affymetrix, Illumina [NR] (imputed)	N
1851	chr5	165947834	165947835	rs2961857	33594131	Donati G	2021-02-16	Sci Rep	Evidence for specificity of polygenic contributions to attainment in English, maths and science during adolescence.	Academic attainment (maths)	6,017 European ancestry adolescents	NA	5q34	NR	rs2961857-G	NR	7E-6		0.093	[0.052-0.134] unit increase	Illumina [6319684] (imputed)	N
1851	chr5	165957085	165957086	rs2122554	20585324	Dick DM	2010-06-27	Mol Psychiatry	Genome-wide association study of conduct disorder symptomatology.	Conduct disorder (symptom count)	872 European, African American and other ancestry substance dependence cases, 3,091 European, African American and other ancestry controls	NA	5q34	intergenic	rs2122554-A	0.162	3E-6		0.1	[NR] unit decrease	Illumina [948658]	N
1851	chr5	165971561	165971562	rs75515090	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	5q34	Intergenic	rs75515090-A	0.9466	1E-8		0.0246	[0.016-0.033] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1851	chr5	166054543	166054544	rs4868774	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling hurt	372,047 European ancestry individuals	NA	5q34	NR	rs4868774-A	0.177192	2E-8		5.62	z score increase	NR [10847151] (imputed)	N
1851	chr5	166061032	166061033	rs80302414	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	5q34	NR	rs80302414-A	0.0725984	4E-8		5.51	z score decrease	NR [10847151] (imputed)	N
1851	chr5	166063679	166063680	rs79476395	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	5q34	NR	rs79476395-G	0.0726	8E-12		0.0143678	[0.01-0.018] unit increase	NR [9732723] (imputed)	N
1851	chr5	166063679	166063680	rs79476395	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	5q34	NR	rs79476395-G	0.0726	1E-11	(Conditioned on chr5:166778503, chr5:165096435, chr5:167614971, chr5:166989513)	0.033374343	[0.024-0.043] unit increase	NR [~ 10000000] (imputed)	N
1852	chr5	166077010	166077011	rs347981	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	5q34		rs347981-C	0.739	3E-9		0.008	[0.006-0.01] unit increase	NR [NR] (imputed)	N
1852	chr5	166104004	166104005	rs6889754	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	5q34	NR	rs6889754-?	NR	3E-7		5.104	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1852	chr5	166109294	166109295	rs111871194	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	5q34	NR	rs111871194-C	0.0990303382917695	3E-9		0.009103216	[0.0061-0.0121] unit decrease	NR [NR]	N
1852	chr5	166109294	166109295	rs111871194	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	5q34	NR	rs111871194-C	0.0990303382917695	6E-9		0.011162888	[0.0074-0.0149] unit decrease	NR [NR]	N
1852	chr5	166109294	166109295	rs111871194	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	5q34	NR	rs111871194-C	0.0990303382917695	4E-9		0.014656007	[0.0098-0.0195] unit decrease	NR [NR]	N
1852	chr5	166109294	166109295	rs111871194	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	5q34	NR	rs111871194-C	0.0990303382917695	1E-8		0.011903038	[0.0078-0.016] unit decrease	NR [NR]	N
1852	chr5	166109294	166109295	rs111871194	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	5q34	NR	rs111871194-C	0.0990303382917695	6E-9		0.009267052	[0.0062-0.0124] unit decrease	NR [NR]	N
1852	chr5	166152521	166152522	rs72834074	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	5q34	TENM2	rs72834074-A	0.1172	2E-8		0.0148128	[0.0097-0.02] unit increase	Affymetrix [11880941] (imputed)	N
1852	chr5	166153544	166153545	rs17067481	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	5q34	Intergenic	rs17067481-T	0.8849	3E-15	(MTAG)	0.0204	[0.015-0.025] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1852	chr5	166153544	166153545	rs17067481	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	5q34	Intergenic	rs17067481-T	0.8849	2E-9		0.0214	[0.014-0.028] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1852	chr5	166153544	166153545	rs17067481	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	5q34	Intergenic	rs17067481-T	0.8791	5E-11	(MTAG)	0.0231	[0.016-0.03] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1852	chr5	166166053	166166054	rs6860339	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	5q34	Intergenic	rs6860339-C	0.5613	1E-23		0.0197	[0.016-0.024] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1852	chr5	166168359	166168360	rs58206417	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	5q34	Intergenic	rs58206417-A	0.8428	1E-21	(MTAG)	0.0235	[0.019-0.028] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1852	chr5	166179132	166179133	rs80116564	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	5q34	NR	rs80116564-A	0.143251	2E-8		5.66	z score increase	NR [10847151] (imputed)	N
1853	chr5	166217988	166217989	rs62390621	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Yeast infection	52,218 European ancestry cases, 10,235 European ancestry controls	NA	5q34	NR	rs62390621-?	NR	1E-6		0.0341	[0.02-0.048] unit decrease	Illumina [at least 560000] (imputed)	N
1853	chr5	166256505	166256506	rs34170659	33407418	Jonsson A	2021-01-06	BMC Med Genomics	Genome-wide association study of circulating levels of glucagon during an oral glucose tolerance test.	Glucagon levels in response to oral glucose tolerance test (decremental area under the curve for 0-120 minutes)	553 European ancestry individuals, 1,346 individuals	NA	5q34	NR	rs34170659-T	0.1837	3E-6		0.2158	[0.13-0.31] unit increase	Illumina [NR] (imputed)	N
1853	chr5	166318189	166318190	rs3853240	22379998	McCormack M	2012-03-01	Pharmacogenomics	Genome-wide mapping for clinically relevant predictors of lamotrigine- and phenytoin-induced hypersensitivity reactions.	Adverse response to lamotrigine and phenytoin	34 European ancestry lamotrigine-induced hypersensitivity cases, 42 European ancestry phenytoin-induced hypersensitivity cases, 1,296 European ancestry controls	NA	5q34	CTB-7E3.1	rs3853240-?	NR	1E-6	(Total LTG and PHT)			Illumina [NR]	N
1854	chr5	166345087	166345088	rs13169373	34488071	Crist RC	2021-08-28	Drug Alcohol Depend	Analysis of genetic and clinical factors associated with buprenorphine response.	Response to buprenorphine in opioid use disorder	1,609 European ancestry individuals	NA	5q34		rs13169373-T	NR	1E-5		1.4364	[1.28-1.6]	Affymetrix [NR] (imputed)	N
1854	chr5	166376649	166376650	rs403825	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	5q34	Intergenic	rs403825-A	0.6249	3E-8		0.0111	[0.0072-0.015] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1854	chr5	166389492	166389493	rs17404956	21441570	Grassi MA	2011-03-26	Hum Mol Genet	Genome-wide meta-analysis for severe diabetic retinopathy.	Diabetic retinopathy	973 European ancestry cases, 1,856 European ancestry controls	NA	5q34	LOC441114, ODZ2	rs17404956-A	0.90	1E-6		1.16	[NR]	Affymetrix, Illumina [2543887] (imputed)	N
1854	chr5	166392054	166392055	rs364926	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fish- and plant-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	5q34	intergenic	rs364926-?	NR	1E-9		0.0174371	[0.012-0.023] unit decrease	Affymetrix [25921788] (imputed)	N
1854	chr5	166408787	166408788	rs42210	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	5q34	NR	rs42210-?		7E-9		0.0138517	[0.0092-0.0185] unit decrease	Affymetrix [19400418] (imputed)	N
1854	chr5	166408787	166408788	rs42210	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	5q34		rs42210-C	0.7134	4E-9		0.014	[0.01-0.018] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
1854	chr5	166408787	166408788	rs42210	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	5q34	TENM2	rs42210-G	0.28759999999999997	5E-10		1.0295275		Affymetrix [11880941] (imputed)	N
1854	chr5	166408787	166408788	rs42210	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	5q34		rs42210-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1854	chr5	166408787	166408788	rs42210	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	5q34	Intergenic	rs42210-C	0.7146	6E-9	(MTAG)	0.0115	[0.0076-0.0154] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1854	chr5	166408787	166408788	rs42210	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	5q34	Intergenic	rs42210-C	0.7143	4E-12	(MTAG)	0.0127	[0.0092-0.0162] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1854	chr5	166408787	166408788	rs42210	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	5q34		rs42210-C	0.7122	3E-10		0.0098	[0.0067-0.0129] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1854	chr5	166408787	166408788	rs42210	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	5q34	Intergenic	rs42210-C	0.7122	2E-11	(MTAG)	0.0097	[0.0068-0.0126] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1855	chr5	166465007	166465008	rs2937582	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	5q34	NR	rs2937582-?	NR	1E-30				Affymetrix [NR]	N
1855	chr5	166478474	166478475	rs11134442	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	5q34		rs11134442-A	0.39	2E-9		5.98	z score increase	Affymetrix [9061022] (imputed)	N
1855	chr5	166478474	166478475	rs11134442	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	5q34	NR	rs11134442-A	0.3747	2E-12				NR [9056863] (imputed)	N
1855	chr5	166546479	166546480	rs2915859	33693791	Park S	2021-03-09	J Nutr	Observational or Genetically Predicted Higher Vegetable Intake and Kidney Function Impairment: An Integrated Population-Scale Cross-Sectional Analysis and Mendelian Randomization Study.	Vegetable consumption	337,128 European ancestry individuals	NA	5q34	NR	rs2915859-T	0.354	2E-9		0.012	[0.0081-0.0159] unit increase	NR [NR] (imputed)	N
1855	chr5	166546479	166546480	rs2915859	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fish- and plant-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	5q34	intergenic	rs2915859-?	NR	5E-9		0.0149303	[0.0099-0.0199] unit decrease	Affymetrix [25921788] (imputed)	N
1856	chr5	166635630	166635631	rs10061819	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	5q34		rs10061819-A	0.15	7E-9		5.8	z score increase	Affymetrix [9061022] (imputed)	N
1856	chr5	166659502	166659503	rs10060187	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	5q34	NR	rs10060187-A	0.148	2E-8				NR [9056863] (imputed)	N
1856	chr5	166660910	166660911	rs17068133	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	5q34		rs17068133-T	0.15	2E-14		7.62	z score increase	Affymetrix [9061022] (imputed)	N
1856	chr5	166666653	166666654	rs4869022	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	5q34	Intergenic	rs4869022-T	0.2207	2E-9		0.0141	[0.0094-0.0188] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1856	chr5	166666717	166666718	rs10462889	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	5q34	Intergenic	rs10462889-A	0.1593	2E-8	(MTAG)	0.0126	[0.0081-0.0171] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1856	chr5	166671182	166671183	rs72827369	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	5q34	Intergenic	rs72827369-T	0.8383	7E-10	(MTAG)	0.015	[0.01-0.02] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1856	chr5	166687297	166687297	rs142229939	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 6, height of vermillion lower lip)	2,187 European ancestry individuals	NA	5q34	NR	rs142229939-GA	0.006422	5E-6		0.8655	[0.49-1.24] unit increase	Illumina [10677593] (imputed)	N
1857	chr5	166754299	166754300	rs1895266	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	5q34		rs1895266-G	0.419	2E-12		0.008	[0.006-0.01] unit increase	NR [NR] (imputed)	N
1857	chr5	166775283	166775284	rs10077097	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	5q34	NR	rs10077097-C	0.667	3E-11		0.00761874	[0.0054-0.0099] unit decrease	NR [9732723] (imputed)	N
1857	chr5	166778502	166778503	rs6890961	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	5q34	NR	rs6890961-T	0.624	2E-13	(Conditioned on chr5:165096435, chr5:167614971, chr5:166989513)	0.019310867	[0.014-0.024] unit decrease	NR [~ 10000000] (imputed)	N
1857	chr5	166786797	166786798	rs78712831	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		TENM2	rs78712831-?	NR	4E-9	(male)	1.39791	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1857	chr5	166786797	166786798	rs78712831	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		TENM2	rs78712831-?	NR	1E-10		1.07602	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1857	chr5	166788225	166788226	rs79029223	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Myringotomy	4,138 European ancestry cases, 85,089 European ancestry controls	NA	5q34	NR	rs79029223-?	NR	6E-7		2.4275	[1.62-3.24] unit increase	Illumina [at least 560000] (imputed)	N
1857	chr5	166803320	166803321	rs11739827	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	5q34	NR	rs11739827-T	0.451	6E-9		0.00781981	[0.0052-0.0105] unit decrease	NR [~ 9732723] (imputed)	N
1857	chr5	166803320	166803321	rs11739827	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week)	up to 941,280 European ancestry individuals	NA	5q34	NR	rs11739827-T	0.451	1E-8		0.008375229	[0.0055-0.0113] unit decrease	NR [~ 10000000] (imputed)	N
1857	chr5	166816175	166816176	rs10078588	31358974	Evangelou E	2019-07-29	Nat Hum Behav	New alcohol-related genes suggest shared genetic mechanisms with neuropsychiatric disorders.	Alcohol consumption	480,842 European ancestry individuals	NA	5q34	TENM2	rs10078588-A	0.52	3E-9		0.006	[0.004-0.008] unit increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1857	chr5	166827564	166827565	rs34731725	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	5q34	NR	rs34731725-A	NR	1E-19		0.0259	[0.02-0.031] unit increase	Affymetrix [9000000] (imputed)	N
1857	chr5	166830170	166830171	rs35263578	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	5q34		rs35263578-A	NR	5E-34		0.0254	[0.021-0.03] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
1857	chr5	166831693	166831694	rs6863407	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	5q34	TENM2	rs6863407-C	0.287442	1E-43		0.00784333	[0.0067-0.009] unit increase	Affymetrix [13995440] (imputed)	N
1857	chr5	166840690	166840691	rs10067798	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	5q34		rs10067798-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1857	chr5	166852765	166852766	rs11958245	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Deep white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	5q34	TENM2	rs11958245-A	0.1722	2E-6		0.0546	[0.032-0.077] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1858	chr5	166883622	166883623	rs12654709	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5q34		rs12654709-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1858	chr5	166913156	166913157	rs6555754	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	7,894 Sub-Saharan African ancestry individuals	NA	5q34		rs6555754-A	0.196713	9E-6		0.0101724	[0.0056-0.0148] unit decrease	Illumina [13900000] (imputed)	N
1858	chr5	166952963	166952964	rs4242224	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	5q34	TENM2	rs4242224-T	0.6318	1E-8		0.01405322	[0.0092-0.0189] unit decrease	Affymetrix [11515109] (imputed)	N
1858	chr5	166973648	166973649	rs77244252	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	5q34		rs77244252-T	NR	4E-7		1.2531328	[1.15-1.37]	Affymetrix [7846216] (imputed)	N
1858	chr5	166978229	166978230	rs72831309	27647854	Sandholm N	2016-09-19	J Am Soc Nephrol	The Genetic Landscape of Renal Complications in Type 1 Diabetes.	Kidney disease (late stage) in type 1 diabetes	1,507 European ancestry cases, 250 controls, 1,903 European ancestry controls, 690 controls	2,536 cases, 3,907 controls	5q34	NR	rs72831309-A	0.04	9E-6		1.66	[1.34-2.06]	Illumina [NR] (imputed)	N
1858	chr5	166984362	166984363	rs13179516	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5q34	WWC1	rs13179516-?	NR	3E-6	(TAG 58:6)	0.57333434	[0.33-0.81] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1858	chr5	166985223	166985224	rs4868800	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	5q34	TENM2	rs4868800-G	0.418334	8E-10		0.0127887	[0.0087-0.0169] unit decrease	NR [16516521] (imputed)	N
1859	chr5	166987743	166987744	rs883323	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	5q34	NR	rs883323-T	0.624	6E-9		0.00792932	[0.0053-0.0106] unit decrease	NR [~ 9732723] (imputed)	N
1859	chr5	166989512	166989513	rs4044321	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking initiation	842,717 European ancestry individuals	NA	5q34	TENM2	rs4044321-A		2E-15		1.029	[NR]	Affymetrix [up to 79000000] (imputed)	N
1859	chr5	166989512	166989513	rs4044321	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	5q34	NR	rs4044321-G	0.644	4E-24		0.011401	[0.0092-0.0136] unit decrease	NR [9732723] (imputed)	N
1859	chr5	166989512	166989513	rs4044321	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	5q34	NR	rs4044321-G	0.644	2E-17		0.022640966	[0.017-0.028] unit decrease	NR [~ 10000000] (imputed)	N
1859	chr5	166989512	166989513	rs4044321	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	5q34	NR	rs4044321-G	0.64	1E-9		0.00924222	[0.0063-0.0122] unit increase	NR [9732723] (imputed)	N
1859	chr5	166990694	166990695	rs2336895	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	5q34		rs2336895-G	0.352	2E-27		0.014	[0.012-0.016] unit increase	NR [NR] (imputed)	N
1859	chr5	166991269	166991270	rs2098651	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms (MTAG)	955,012 individuals	NA	5q34	NR	rs2098651-?		2E-10				NR [520857]	N
1859	chr5	166991269	166991270	rs2098651	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms	688,809 individuals	NA	5q34	NR	rs2098651-?		2E-10				NR [11140414]	N
1859	chr5	166991269	166991270	rs2098651	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	5q34	TENM2	rs2098651-?		7E-9				NR [6786993] (imputed)	N
1859	chr5	166991269	166991270	rs2098651	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking cessation (MTAG)	up to 820,192 European ancestry individuals	NA	5q34	NR	rs2098651-G	0.62	2E-11		0.0106521	[0.0076-0.0137] unit decrease	NR [9732723] (imputed)	N
1859	chr5	166991269	166991270	rs2098651	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depression	688,809 European ancestry individuals	NA	5q34	NR	rs2098651-C	NR	2E-10		6.344	z score increase	Affymetrix [10847151] (imputed)	N
1859	chr5	166991695	166991696	rs13186288	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	5q34		rs13186288-?	NR	2E-20		0.0261	unit increase	NR [NR]	N
1859	chr5	166992077	166992078	rs4869056	31926635	Coleman JRI	2019-11-01	Biol Psychiatry	The Genetics of the Mood Disorder Spectrum: Genome-wide Association Analyses of More Than 185,000 Cases and 439,000 Controls.	Bipolar disorder or major depressive disorder	164,933 European ancestry major depressive disorder cases, 20,352 European ancestry bipolar disorder cases, 439,741 European ancestry controls	NA	5q34	NR	rs4869056-G	NR	5E-9		1.0309278		NR [NR] (imputed)	N
1859	chr5	166992077	166992078	rs4869056	29700475	Wray NR	2018-04-26	Nat Genet	Genome-wide association analyses identify 44 risk variants and refine the genetic architecture of major depression.	Depression	135,458 European ancestry cases, 344,901 European ancestry controls	NA	5q34	TENM2	rs4869056-G	0.37	7E-9		1.0309278	[1.02-1.04]	NR [9622763] (imputed)	N
1859	chr5	166992246	166992247	rs4869058	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	5q34	TENM2	rs4869058-A	0.641	8E-14		0.01564975	[0.012-0.02] unit decrease	Affymetrix [11514654] (imputed)	N
1859	chr5	166992707	166992708	rs11747772	30617275	Erzurumluoglu AM	2019-01-07	Mol Psychiatry	Meta-analysis of up to 622,409 individuals identifies 40 novel smoking behaviour associated genetic loci.	Smoking initiation	324,851 European ancestry individuals, 21,962 South Asian ancestry individuals	up to 275,596 European ancestry individuals	5q34	TENM2	rs11747772-C	0.25	6E-9		0.0144	[0.0085-0.0203] unit increase (replication)	Affymetrix, Illumina [up to 1207583] (imputed)	N
1859	chr5	166993971	166993972	rs986391	33563987	Tyrrell J	2021-02-09	Nat Commun	Genetic predictors of participation in optional components of UK Biobank.	Acceptance of an invitation to participate in a mental health questionnaire	146,074 European ancestry cases, 148,713 European ancestry controls	NA	5q34	NR	rs986391-G	0.37	7E-9		0.97	[0.97, 0.98]	Affymetrix [39302896] (imputed)	N
1859	chr5	166993971	166993972	rs986391	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	5q34		rs986391-G	0.367	9E-15		0.016	[0.012-0.02] unit increase	Affymetrix [up to 90000000] (imputed)	N
1859	chr5	166993971	166993972	rs986391	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	5q34		rs986391-?	NR	6E-18				NR [~ 8900000] (imputed)	N
1859	chr5	166996721	166996722	rs1549212	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Smoking status (ever vs never smokers)	336,066 British ancestry individuals	NA	5q34	NR	rs1549212-C	0.3744	2E-9		1.032	[1.02-1.04]	NR [8968716] (imputed)	N
1859	chr5	166996721	166996722	rs1549212	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking initiation (ever regular vs never regular)	up to 433,216 European ancestry individuals	NA	5q34	ODZ2	rs1549212-T	0.626	1E-9		0.0144	[0.0098-0.019] unit decrease	Illumina [~ 250000] (imputed)	N
1859	chr5	166996721	166996722	rs1549212	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	5q34	TENM2	rs1549212-T	0.6265	4E-9		0.015643803	[0.01-0.021] unit decrease	Affymetrix [~ 11515000] (imputed)	N
1859	chr5	167001889	167001890	rs34774377	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	5q34	NR	rs34774377-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1859	chr5	167016256	167016257	rs17068792	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	5q34	TENM2	rs17068792-C	0.0093784037587651	5E-6	(F_Sutterellaceae_HB)	1.57969	[0.9-2.26] unit decrease	Illumina [7711310] (imputed)	N
1859	chr5	167037933	167037934	rs11134465	33563987	Tyrrell J	2021-02-09	Nat Commun	Genetic predictors of participation in optional components of UK Biobank.	Percentage of invited food questionnaires completed	300,639 European ancestry individuals	NA	5q34	NR	rs11134465-G	0.32	4E-10		0.6	[0.4-0.8] unit decrease	Affymetrix [39302896] (imputed)	N
1859	chr5	167050275	167050276	rs2336897	31263887	Adams MJ	2019-07-01	Int J Epidemiol	Factors associated with sharing e-mail information and mental health survey participation in large population cohorts.	Mental health study participation (completed survey)	122,647 British ancestry cases, 248,781 British ancestry controls	NA	5q34	TENM2	rs2336897-T	0.69	5E-9		0.0068145	[0.0045-0.0091] unit increase	NR [16367095] (imputed)	N
1859	chr5	167061773	167061774	rs62382816	32890573	Yan Q	2020-09-02	J Allergy Clin Immunol	A genome-wide association study of asthma hospitalizations in adults.	Exacerbations requiring hospitalisation in asthma	1,658 British ancestry cases, 32,509 British ancestry controls	NA	5q34	NR	rs62382816-T	0.66	7E-6		1.18	[NR]	Affymetrix [87696888] (imputed)	N
1859	chr5	167075659	167075660	rs73803919	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	5q34	ODZ2	rs73803919-A	0.994	7E-9	(AA)	0.171	unit increase	Illumina [NR] (imputed)	N
1860	chr5	167129353	167129354	rs72830077	33009551	Zhang J	2020-10-03	Cereb Cortex	Genome-Wide Association Analysis of Neonatal White Matter Microstructure.	Neonatal white matter microstructure	471 European, Black, Asian, Native American or unknown ancestry individuals	NA	5q34	TENM2	rs72830077-G	NR	3E-7		4.01	[NR] unit increase	Affymetrix [NR] (imputed)	N
1860	chr5	167132225	167132226	rs10058151	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5q34	WWC1	rs10058151-?	NR	4E-6	(phosphocreatine)	0.35339555	[0.2-0.5] unit increase	Affymetrix [at least 2500000] (imputed)	N
1860	chr5	167183747	167183748	rs13174776	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	5q34	WWC1	rs13174776-C	0.1081	5E-9		0.022293832	[0.015-0.03] unit increase	Affymetrix [11515109] (imputed)	N
1860	chr5	167210471	167210472	rs2973662	22610502	Kennedy RB	2012-05-19	Hum Genet	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune response to smallpox vaccine (IL-6)	Up to 512 European ancestry individuals, 199 African American individuals	NA	5q34	ODZ2	rs2973662-A		5E-7	(AA)			Illumina [NR]	N
1860	chr5	167226978	167226979	rs1549309	23636237	Tanaka T	2013-05-01	Am J Clin Nutr	Genome-wide meta-analysis of observational studies shows common genetic variants associated with macronutrient intake.	Dietary macronutrient intake	37,537 European ancestry individuals	33,533 European ancestry individuals	5q34	NR	rs1549309-A	0.17	2E-6	(Carbohydrate)	0.27	[0.15-0.39] % increase	Affymetrix, Illumina [2500000] (imputed)	N
1860	chr5	167227802	167227803	rs6861976	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	5q34	NA	rs6861976-G		5E-9		0.0124415	[0.0083-0.0166] unit increase	Illumina [13288253] (imputed)	N
1860	chr5	167232819	167232820	rs68057166	29503163	Yu H	2018-03-01	Lancet Psychiatry	Five novel loci associated with antipsychotic treatment response in patients with schizophrenia: a genome-wide association study.	Response to aripiprazole in schizophrenia	397 Han Chinese ancestry cases	405 Han Chinese ancestry cases	5q34	ODZ2	rs68057166-G	NR	4E-7		6.15	[3.76-8.54] unit decrease	Illumina [6097251] (imputed)	N
1861	chr5	167275948	167275949	rs2909797	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	5q34	NR	rs2909797-?	NR	9E-7		0.0089384	[0.0054-0.0125] unit increase	Affymetrix [805426] (imputed)	N
1861	chr5	167280454	167280455	rs147208935	30818990	Yu D	2019-03-01	Am J Psychiatry	Interrogating the Genetic Determinants of Tourette's Syndrome and Other Tic Disorders Through Genome-Wide Association Studies.	Tourette syndrome	4,271 European ancestry cases, 548 European ancestry cases from 207 families, 9,488 European ancestry controls	706 Icelandic ancestry cases, 6,068 Icelandic ancestry controls	5q34	TENM2	rs147208935-T	0.01	2E-6		1.8606018		Illumina [8265319] (imputed)	N
1861	chr5	167307528	167307529	rs28547994	35131881	Testori A	2022-02-07	Cancer Epidemiol Biomarkers Prev	Genetic analysis in African American children supports ancestry specific neuroblastoma susceptibility.	Neuroblastoma	254 African American cases, 2,990 African American controls	NA	5q34		rs28547994-C	NR	4E-6		0.4689	unit increase	Illumina [NR] (imputed)	N
1861	chr5	167331322	167331323	rs7710122	30675382	Leblond CS	2019-01-21	NPJ Genom Med	Both rare and common genetic variants contribute to autism in the Faroe Islands.	Autism	36 European ancestry, 176 European ancestry controls	NA	5q34	TENM2	rs7710122-C		5E-6				Illumina [1690491] (imputed)	N
1861	chr5	167362415	167362416	rs32421	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	5q34		rs32421-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1861	chr5	167370262	167370263	rs9647570	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	5q34	TENM2	rs9647570-G	0.14	1E-11		0.05	[0.036-0.064] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
1861	chr5	167373265	167373266	rs32410	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	5q34	NR	rs32410-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
1862	chr5	167392010	167392011	rs2337033	32157176	Buchwald J	2020-03-10	Mol Psychiatry	Genome-wide association meta-analysis of nicotine metabolism and cigarette consumption measures in smokers of European descent.	Smoking behaviour (cigarette pack-years)	4,676 European ancestry individuals	NA	5q34		rs2337033-G	0.347	2E-8		0.097	[0.064-0.13] unit decrease	Illumina [9622178] (imputed)	N
1862	chr5	167420295	167420296	rs11955430	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	5q34	TENM2	rs11955430-T	0.695529	1E-9		0.013681	[0.0093-0.0181] unit increase	NR [16516521] (imputed)	N
1862	chr5	167452250	167452251	rs17069646	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	5q34		rs17069646-T	0.6881	2E-8		0.0085	[0.0056-0.0114] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1862	chr5	167455594	167455595	rs10068776	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure	35,269 European ancestry cases, 63,451 European ancestry controls	NA	5q34	NR	rs10068776-G	0.177928	3E-7		1.073	[1.05-1.1]	Affymetrix [7791636] (imputed)	N
1862	chr5	167456178	167456179	rs62383381	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	5q34	NR	rs62383381-C	0.1644	9E-7		0.0078	[0.0047-0.0109] unit increase	NR [7666894] (imputed)	N
1862	chr5	167487240	167487241	rs11749990	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	5q34	TENM2, WWC1	rs11749990-G	NR	5E-6	(mid-sleep time, weekdays)	0.3205	[0.18-0.46] unit increase	Affymetrix [7141204] (imputed)	N
1862	chr5	167495971	167495972	rs248003	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5q34	WWC1	rs248003-?	NR	8E-6	(carnosine)	0.23636155	[0.13-0.34] unit increase	Affymetrix [at least 2500000] (imputed)	N
1862	chr5	167500459	167500460	rs13358864	22229870	Karns R	2012-01-09	Ann Hum Genet	Genome-wide association of serum uric acid concentration: replication of sequence variants in an island population of the Adriatic coast of Croatia.	Uric acid levels	1,300 European ancestry individuals	NA	5q34	ODZ2	rs13358864-A	0.10	5E-6		24.09	[NR] umol/L decrease	Affymetrix [2241249] (imputed)	N
1863	chr5	167510356	167510357	rs2569041	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	5q34		rs2569041-T	0.5421	5E-8		0.0077	[0.005-0.0104] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1863	chr5	167514219	167514220	rs74757231	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (negative Marder score)	1,390 European ancestry cases	NA	5q34		rs74757231-G	NR	4E-6	(GLM)	3.7011	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
1863	chr5	167535027	167535028	rs6867056	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	5q34		rs6867056-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1863	chr5	167535027	167535028	rs6867056	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	5q34	Intergenic	rs6867056-T	0.2048	5E-11	(MTAG)	0.0134	[0.0095-0.0173] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1863	chr5	167535027	167535028	rs6867056	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	5q34	Intergenic	rs6867056-T	0.2125	2E-11	(MTAG)	0.0107	[0.0076-0.0138] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1863	chr5	167558837	167558838	rs6862251	29970889	Day FR	2018-07-03	Nat Commun	Elucidating the genetic basis of social interaction and isolation.	Regular attendance at a religious group	66,259 European ancestry cases, 386,043 European ancestry controls	NA	5q34	ODZ2, WWC1	rs6862251-C	0.699021	5E-10		0.00490792	[0.0033-0.0065] unit increase	NR [NR] (imputed)	N
1863	chr5	167591401	167591402	rs891933	30306274	Shah RL	2018-10-10	Hum Genet	Genome-wide association studies for corneal and refractive astigmatism in UK Biobank demonstrate a shared role for myopia susceptibility loci.	Refractive astigmatism	88,005 European ancestry individuals		5q34	TENM2	rs891933-C	0.537	7E-6		0.013	[0.0071-0.0189] dioptres increase	NR [5900115] (imputed)	N
1863	chr5	167604212	167604213	rs13153393	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	5q34		rs13153393-A	0.884	3E-10		0.02	[0.014-0.026] unit decrease	Affymetrix [up to 90000000] (imputed)	N
1863	chr5	167614970	167614971	rs2173019	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	5q34	NR	rs2173019-A	0.177	3E-17		0.0119549	[0.0092-0.0147] unit increase	NR [9732723] (imputed)	N
1863	chr5	167614970	167614971	rs2173019	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	5q34	NR	rs2173019-A	0.177	3E-17	(Conditioned on chr5:166989513)	0.028206952	[0.022-0.035] unit increase	NR [~ 10000000] (imputed)	N
1863	chr5	167621048	167621049	rs12659719	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	5q34		rs12659719-T	0.5723	2E-9	(conditional-joint)	0.0085	[0.0058-0.0112] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1863	chr5	167621273	167621274	rs12659776	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	5q34		rs12659776-T	0.5399	2E-9		0.0085	[0.0058-0.0112] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1863	chr5	167623282	167623283	rs17632217	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	5q34	NR	rs17632217-G	0.121	1E-8		0.0126955	[0.0083-0.0171] unit decrease	NR [9732723] (imputed)	N
1863	chr5	167627859	167627863	rs141001162	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip and palate	121 Asian ancestry cases, 159 European ancestry cases, 285 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	5q34	NR	rs141001162-?	NR	7E-6		2.71	[2.37-3.11]	Illumina [539000] (imputed)	N
1864	chr5	167643544	167643545	rs6885116	22699663	Divaris K	2012-07-01	J Dent Res	Genome-wide association study of periodontal pathogen colonization.	Periodontal microbiota	1,020 European ancestry individuals	NA	5q34	ODZ2, WWC1	rs6885116-G	0.078	1E-6	(A. actino)	2.57	[1.76-3.74]	Affymetrix [~ 2500000] (imputed)	N
1864	chr5	167644292	167644293	rs7708354	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	5q34		rs7708354-T	0.762	2E-10		0.009	[0.007-0.011] unit decrease	NR [NR] (imputed)	N
1864	chr5	167661161	167661162	rs2161300	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	5q34	NR	rs2161300-T	NR	6E-6		1.07	[NR]	Illumina [7158791] (imputed)	N
1864	chr5	167668229	167668230	rs6882169	28642124	Hensman Moss DJ	2017-06-20	Lancet Neurol	Identification of genetic variants associated with Huntington's disease progression: a genome-wide association study.	Huntington's disease progression	1,989 European and unknown ancestry mutation carriers	NA	5q34	CTB-178M22.2, TENM2	rs6882169-?	NR	3E-6				Illumina [9650000] (imputed)	N
1864	chr5	167699325	167699326	rs17632655	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	5q34		rs17632655-C	0.23	2E-9		6.04	z score increase	Affymetrix [9061022] (imputed)	N
1864	chr5	167713999	167714000	rs142091544	31469419	Manichaikul A	2019-08-30	Int J Cancer	Identification of novel epithelial ovarian cancer loci in Women of African Ancestry.	Epithelial ovarian cancer	755 African ancestry cases, 1,235 African ancestry controls	NA	5q34	WWC1	rs142091544-T	0.034	9E-7		3.22	[2.02-5.13]	Illumina [12486624] (imputed)	N
1864	chr5	167724185	167724186	rs13164530	31324189	Kim W	2019-07-19	Respir Res	DSP variants may be associated with longitudinal change in quantitative emphysema.	Emphysema annual change measurement in smokers (percent low attenuation area)	4,427 European ancestry individuals, 1,158 African American individuals	NA	5q34	WWC1	rs13164530-T	NR	4E-7		0.14	[0.085-0.195] unit increase	Illumina [NR] (imputed)	N
1864	chr5	167724185	167724186	rs13164530	31324189	Kim W	2019-07-19	Respir Res	DSP variants may be associated with longitudinal change in quantitative emphysema.	Emphysema annual change measurement in smokers (percent low attenuation area)	4,427 European ancestry individuals, 1,158 African American individuals	NA	5q34	WWC1	rs13164530-T	0.136	5E-6	(EA)	0.136	[0.077-0.195] unit increase	Illumina [NR] (imputed)	N
1864	chr5	167747706	167747707	rs72822618	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	5q34	NR	rs72822618-T	0.0928	1E-8				NR [9056863] (imputed)	N
1865	chr5	167792681	167792682	rs78954674	30566433	Taira M	2018-12-19	PLoS One	A variant within the FTO confers susceptibility to diabetic nephropathy in Japanese patients with type 2 diabetes.	Type 2 diabetes nephropathy including microalbuminuria	at least 2,809 Japanese ancestry cases, 5,592 Japanese ancestry controls	at least 2,115 Japanese ancestry cases, 2,519 Japanese ancestry controls	5q34	WWC1	rs78954674-A	NR	1E-6		1.17	[1.10-1.25]	Illumina [NR]	N
1865	chr5	167806835	167806836	rs72828890	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	5q34	NR	rs72828890-?		5E-9		0.0192918	[0.013-0.026] unit increase	Affymetrix [19400418] (imputed)	N
1865	chr5	167828209	167828210	rs9313410	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	5q34	NR	rs9313410-C	0.132	9E-6	(IFNalpha_STAT4_of_CD4p_T)			Illumina [5084123] (imputed)	N
1865	chr5	167843997	167843998	rs4976602	31263887	Adams MJ	2019-07-01	Int J Epidemiol	Factors associated with sharing e-mail information and mental health survey participation in large population cohorts.	Mental health study participation (provided email address)	224,321 British ancestry cases, 147,096 British ancestry controls	NA	5q34	WWC1	rs4976602-A	0.11	3E-8		0.0097103	[0.0063-0.0131] unit decrease	NR [16367095] (imputed)	N
1865	chr5	167847459	167847460	rs11134512	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		5q34	WWC1	rs11134512-T	0.676993	2E-8		0.00824166	[0.0054-0.0111] unit increase	Affymetrix [12370749]	N
1865	chr5	167847459	167847460	rs11134512	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	5q34		rs11134512-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1865	chr5	167853432	167853433	rs11738811	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Cerebellum cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	5q34	WWC1	rs11738811-?		7E-6				Illumina [4322238] (imputed)	N
1865	chr5	167861568	167861569	rs7723533	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	5q34	NR	rs7723533-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1866	chr5	167911039	167911040	rs244899	21844884	Wheeler HE	2011-08-16	Pharmacogenomics J	Genome-wide meta-analysis identifies variants associated with platinating agent susceptibility across populations.	Response to platinum-based chemotherapy (carboplatin)	176 Sub-Saharan African ancestry lymphoblastoid cell lines, 83 African ancestry lymphoblastoid cell lines, 175 East Asian ancestry lymphoblastoid cell lines, 174 European ancestry lymphoblastoid cell lines	NA	5q34	RARS	rs244899-?		1E-6				NR [~ 3000000] (imputed)	N
1866	chr5	167917503	167917504	rs590784	30843173	Popovic M	2019-03-07	J Endocrinol Invest	Genome-wide meta-analysis identifies novel loci associated with free triiodothyronine and thyroid-stimulating hormone.	Triiodothyronine levels and thyroxine levels	Up to 1,729 Croatian, Korculan (founder/genetic isolate) and Vis (founder/genetic isolate) individuals	NA	5q34	RARS	rs590784-A	0.52	4E-6		0.017	[0.0097-0.0243] unit increase	Illumina [7411206] (imputed)	N
1866	chr5	167931672	167931673	rs75399022	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	5q34		rs75399022-C	NR	4E-8		0.017	[0.011-0.023] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
1866	chr5	167957553	167957554	rs3733977	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	200,622 European ancestry individuals	NA	5q34	FBLL1	rs3733977-A	0.1615	6E-6		0.0101	[0.0058-0.0144] unit increase	Affymetrix, Illumina [34064007] (imputed)	N
1866	chr5	167985458	167985459	rs35693458	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder in trauma-unexposed individuals	9,487 European ancestry cases, 39,677 European ancestry controls	NA	5q34	NR	rs35693458-A	0.147982	8E-6		1.135	[1.08-1.19]	Affymetrix [7791636] (imputed)	N
1867	chr5	168076505	168076506	rs1460100	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5q34	PANK3	rs1460100-?	NR	2E-6	(indole-3-propionate)	0.23911291	[0.14-0.34] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1867	chr5	168152308	168152309	rs17665285	33824429	Fjukstad KK	2021-04-06	Pharmacogenomics J	Genetic variants associated with cardiometabolic abnormalities during treatment with selective serotonin reuptake inhibitors: a genome-wide association study.	Total cholesterol levels x SSRI levels (escitalopram or citalopram) interaction in schizophrenia or bipolar disorder	181 European ancestry individuals	NA	5q34	SLIT3	rs17665285-A	NR	1E-5		2.68114	[1.53-3.83] unit decrease	Illumina [NR] (imputed)	N
1868	chr5	168166730	168166731	rs142385399	32372009	de Las Fuentes L	2020-05-05	Mol Psychiatry	Gene-educational attainment interactions in a multi-ancestry genome-wide meta-analysis identify novel blood pressure loci.	Diastolic blood pressure x educational attainment (graduated college) interaction (2df)	27,367 European ancestry college graduated individuals, 51,673 European ancestry non-college graduated individuals, 3,605 African ancestry college graduated individuals, 13,060 African ancestry non-college graduated individuals, 291 Asian ancestry college graduated individuals, 457 Asian ancestry non-college graduated individuals, 786 Hispanic/Latin American college graduated individuals, 4,359 Hispanic/Latin American non-college graduated individuals	67,506 European ancestry college graduated individuals, 189,531 European ancestry non-college graduated individuals, 781 African ancestry college graduated individuals, 6,417 African ancestry non-college graduated individuals, 651 Asian ancestry college graduated individuals, 5,296 Asian ancestry non-college graduated individuals, 1,703 Hispanic college graduated individuals, 9,928 Hispanic non-college graduated individuals	5q34	SLIT3	rs142385399-A		5E-8		7.07	[4.68-9.46] unit decrease	Affymetrix, Illumina [~ 18800000] (imputed)	N
1868	chr5	168176516	168176517	rs2304035	34437536	Akhtari FS	2021-08-26	PLoS Genet	High-throughput screening and genome-wide analyses of 44 anticancer drugs in the 1000 Genomes cell lines reveals an association of the NQO1 gene with the response of multiple anticancer drugs.	Response to taxane treatment (docetaxel)	680 lymphoblastoid cell lines from Han Chinese ancestry, Japanese ancestry, Kenyan ancestry, Mexican ancestry, Tuscan ancestry, Yoruban ancestry, British ancestry, Columbian ancestry individuals	NA	5q34		rs2304035-?	NR	2E-7				Illumina [1510701]	N
1868	chr5	168211253	168211254	rs2163761	27694959	Bonder MJ	2016-10-03	Nat Genet	The effect of host genetics on the gut microbiome.	Gut microbiota (functional units)	984 European ancestry individuals	530 European ancestry individuals	5q34	SLIT3	rs2163761-T	NR	4E-9	(PWY-6948_sitosterol_degradation_to_androstenedione)	5.8900447	NR Z-score increase	Illumina [8100000] (imputed)	N
1868	chr5	168224397	168224398	rs17553750	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	5q34	NR	rs17553750-A	NR	1E-13		0.0325	[0.024-0.041] unit decrease	Affymetrix [9000000] (imputed)	N
1868	chr5	168224594	168224595	rs17665720	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	5q34	SLIT3	rs17665720-G	NR	1E-8		0.022728	[0.015-0.031] unit decrease	Affymetrix [321016] (imputed)	N
1868	chr5	168250902	168250903	rs2974438	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	5q34		rs2974438-A	NR	4E-55		0.0248	[0.022-0.028] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1868	chr5	168250902	168250903	rs2974438	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	5q34	SLIT3	rs2974438-?	NR	2E-21		0.03419995	[0.027-0.041] unit decrease	Illumina [27896057] (imputed)	N
1868	chr5	168250902	168250903	rs2974438	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	5q34	SLIT3	rs2974438-A	0.203	4E-24		0.037	[0.029-0.045] unit decrease	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
1868	chr5	168256239	168256240	rs4282339	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	5q34		rs4282339-A	NR	7E-11		0.0132	[0.0093-0.0171] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1868	chr5	168256239	168256240	rs4282339	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	5q34		rs4282339-A	0.204379	2E-19		0.0224057	[0.018-0.027] unit decrease	Illumina [13479295] (imputed)	N
1868	chr5	168256239	168256240	rs4282339	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	5q34	NR	rs4282339-A	NR	2E-80		0.0562	[0.05-0.062] unit decrease	Affymetrix [9000000] (imputed)	N
1868	chr5	168256239	168256240	rs4282339	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5q34		rs4282339-?	NR	2E-73				NR [~ 8900000] (imputed)	N
1868	chr5	168256239	168256240	rs4282339	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	5q34	SLIT3	rs4282339-A	0.2029	7E-8		0.0452	[0.029-0.062] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1868	chr5	168256239	168256240	rs4282339	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	5q34	SLIT3	rs4282339-A	0.18	4E-8		0.036	[0.022-0.05] unit decrease	Affymetrix, Illumina [2704730] (imputed)	N
1868	chr5	168256239	168256240	rs4282339	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	5q34	SLIT3	rs4282339-A	0.2	7E-16		0.036	[NR] unit decrease	Affymetrix, Illumina [2834208] (imputed)	N
1868	chr5	168256683	168256683	rs753850502	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	5q34	SLIT3	rs753850502-A	0.2076	5E-41		0.0311	[0.027-0.036] unit decrease	Affymetrix [18391927] (imputed)	N
1868	chr5	168257169	168257170	rs34646762	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	5q34	SLIT3	rs34646762-C	NR	2E-9		0.022618	[0.015-0.03] unit decrease	Affymetrix [321016] (imputed)	N
1868	chr5	168265890	168265891	rs1979923	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	5q34	SLIT3	rs1979923-C	NR	3E-9		0.0211869	[0.014-0.028] unit decrease	Affymetrix [323123] (imputed)	N
1868	chr5	168270852	168270853	rs62378543	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	5q34	NR	rs62378543-G	NR	9E-19		0.0269	[0.021-0.033] unit increase	Affymetrix [9000000] (imputed)	N
1869	chr5	168297190	168297191	rs74863661	32131869	Arbeeva L	2020-03-04	J Foot Ankle Res	Genome-wide meta-analysis identified novel variant associated with hallux valgus in Caucasians.	Hallux valgus	609 European ancestry male cases, 1,666 European ancestry male controls	NA	5q34	SLIT3	rs74863661-T	0.15	2E-6		1.57	[1.30-1.89]	Affymetrix, Illumina [up to 7729175] (imputed)	N
1869	chr5	168333136	168333137	rs13172600	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	5q34		rs13172600-A	NR	1E-8		0.0111	[0.0074-0.0148] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1869	chr5	168386088	168386089	rs12188351	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	5q34	SLIT3	rs12188351-A	0.056	3E-9		1.09	[1.06-1.12]	Illumina [34740186] (imputed)	N
1869	chr5	168386088	168386089	rs12188351	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Inflammatory skin disease	2,079 European ancestry atopic dermatitis cases, 4,212 European ancestry psoriasis cases, 11,899 European ancestry controls	NA	5q34	SLIT3	rs12188351-?	NR	1E-8	(Psoriasis)			Affymetrix, Illumina [~ 5200000]	N
1869	chr5	168400137	168400137	rs34549496	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Non-word reading	3,409 European ancestry individuals	NA	5q34	SLIT3	rs34549496-A	0.576311429	2E-6		0.146149	[0.085-0.207] unit increase	Illumina [6969139] (imputed)	N
1870	chr5	168445488	168445489	rs11954861	31766143	Ortega-Azorin C	2019-11-13	Nutrients	Candidate Gene and Genome-Wide Association Studies for Circulating Leptin Levels Reveal Population and Sex-Specific Associations in High Cardiovascular Risk Mediterranean Subjects.	Circulating leptin levels x sex interaction in high cardiovascular risk	351 Spanish mediterranean ancestry men, 615 Spanish mediterranean ancestry women	NA	5q35.1	SLIT3	rs11954861-?	0.12	1E-8				Illumina [628376]	N
1870	chr5	168445488	168445489	rs11954861	31766143	Ortega-Azorin C	2019-11-13	Nutrients	Candidate Gene and Genome-Wide Association Studies for Circulating Leptin Levels Reveal Population and Sex-Specific Associations in High Cardiovascular Risk Mediterranean Subjects.	Circulating leptin levels in high cardiovascular risk	351 Spanish mediterranean ancestry men, 615 Spanish mediterranean ancestry women	NA	5q35.1	SLIT3	rs11954861-?	0.12	2E-6	(women, model 3)	0.494	NR unit decrease	Illumina [628376]	N
1870	chr5	168466568	168466569	rs7720655	34002096	Mullins N	2021-05-17	Nat Genet	Genome-wide association study of more than 40,000 bipolar disorder cases provides new insights into the underlying biology.	Bipolar II disorder	6,781 European ancestry cases, 364,075 European ancestry controls	NA	5q35.1	NR	rs7720655-T	0.865	3E-8		0.85513	[0.80-0.91]	Affymetrix, Illumina [7549318] (imputed)	N
1870	chr5	168506966	168506967	rs73314020	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q35.1	NR	rs73314020-A	0.03659	6E-9	(AP1B1)	0.01612	NR unit increase	Illumina [1671387] (imputed)	N
1870	chr5	168509731	168509732	rs7735612	30468137	Fabbri C	2018-11-23	Br J Psychiatry	Genome-wide association study of treatment-resistance in depression and meta-analysis of three independent samples.	Treatment resistant depression	1,378 European ancestry treatment resistant cases, 934 European ancestry responders to first treatment, 914 European ancestry non-responders to first treatment	NA	5q35.1	SLIT3	rs7735612-C	0.4	6E-7		1.63	[1.43-1.83]	Affymetrix, Illumina [7000000] (imputed)	N
1870	chr5	168519121	168519122	rs76493495	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Body mass index	17,127 African American individuals, 21,955 Hispanic/Latino individuals, 4,647 Asian ancestry individuals, 3,936 Native Hawaiian ancestry individuals, 645 Native American ancestry individuals, 1,025 individuals	NA	5q35.1	SLIT3	rs76493495-?	NR	8E-9		0.101	[0.068-0.134] unit decrease	Illumina [32062178] (imputed)	N
1872	chr5	168738590	168738591	rs12656569	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	5q35.1		rs12656569-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1872	chr5	168749736	168749737	rs6555855	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	5q35.1	SLIT3	rs6555855-G	0.23	2E-9		0.04	[0.028-0.052] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
1872	chr5	168758490	168758491	rs116717021	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Free cholesterol in very large HDL meal response (OrNLSr)	4,292 individuals	NA	5q35.1		rs116717021-T	0.028546879	4E-8		0.396513	[0.25-0.54] unit decrease	Illumina [7701709] (imputed)	N
1872	chr5	168817087	168817088	rs10073216	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	5q35.1	NR	rs10073216-?	NR	3E-8				Affymetrix [NR]	N
1873	chr5	168837487	168837488	rs6898594	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Bipolar disorder x sex interaction	19,924 European ancestry cases, 30,547 European ancestry controls	NA	5q35.1	SLIT3, SPDL1	rs6898594-A	0.5681	8E-6		0.1357	[0.076-0.195] unit increase	NR [NR] (imputed)	N
1873	chr5	168887141	168887142	rs535520770	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	225,112 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	445,360 individuals	5q35.1	intergenic	rs535520770-G	5.0E-4	3E-12		4.3571	[3.13-5.58] mmHg increase	Affymetrix [NR] (imputed)	N
1873	chr5	168899986	168899987	rs13156607	20966902	Croteau-Chonka DC	2010-10-21	Obesity (Silver Spring)	Genome-wide association study of anthropometric traits and evidence of interactions with age and study year in Filipino women.	Waist circumference	1,779 Filipino ancestry females	NA	5q35.1	CCDC99	rs13156607-T	0.11	5E-6		3.91	[2.24-5.58] cm increase	Affymetrix [2073674] (imputed)	N
1874	chr5	168978147	168978148	rs29792	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	5q35.1		rs29792-A	0.3032	1E-9		0.0093	[0.0064-0.0122] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1874	chr5	168978147	168978148	rs29792	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	5q35.1	Intergenic	rs29792-A	0.3032	7E-9	(MTAG)	0.0083	[0.0056-0.011] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1874	chr5	168988001	168988002	rs79019413	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q35.1	NR	rs79019413-T	0.01916	3E-8	(EMILIN2)	0.09511	NR unit increase	Illumina [1671387] (imputed)	N
1874	chr5	169015478	169015479	rs116483731	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulmonary fibrosis	1,566 European ancestry cases, 467,560 European ancestry controls, 126 East Asian ancestry cases, 176,974 East Asian ancestry controls	NA	5q35.1		rs116483731-A	NR	6E-9		0.9082	[0.6-1.21] unit increase	Affymetrix, Illumina [25843031] (imputed)	N
1874	chr5	169015478	169015479	rs116483731	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Interstitial lung disease	2,267 European ancestry cases, 467,560 European ancestry controls, 1,046 East Asian ancestry cases, 176,974 East Asian ancestry controls	NA	5q35.1		rs116483731-A	NR	2E-11		0.806	[0.57-1.04] unit increase	Affymetrix, Illumina [25843170] (imputed)	N
1874	chr5	169015478	169015479	rs116483731	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Sex hormone-binding globulin levels	397,043 European ancestry individuals	NA	5q35.1		rs116483731-?	NR	1E-18		0.0971455	[0.074-0.12] unit increase	NR [9800000] (imputed)	N
1874	chr5	169015478	169015479	rs116483731	33758299	Dhindsa RS	2021-03-23	Commun Biol	Identification of a missense variant in SPDL1 associated with idiopathic pulmonary fibrosis.	Idiopathic pulmonary fibrosis	752 European ancestry cases, 119,055 European ancestry controls	1,028 Finnish ancestry cases, 196,986 Finnish ancestry controls	5q35.1		rs116483731-A	NR	2E-20	(combined evidence from both cohorts)			NR [564159]	N
1874	chr5	169015478	169015479	rs116483731	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	5q35.1	NR	rs116483731-A	NR	2E-9		0.0856	[0.058-0.113] unit increase	Affymetrix [9000000] (imputed)	N
1874	chr5	169015478	169015479	rs116483731	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	5q35.1	NR	rs116483731-A	0.008044999999999969	4E-22		0.0443749	[0.035-0.054] unit increase	Affymetrix [16582909] (imputed)	N
1874	chr5	169015478	169015479	rs116483731	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	5q35.1	NR	rs116483731-A	0.008020999999999945	1E-14		0.0505302	[0.038-0.063] unit increase	Affymetrix [16582621] (imputed)	N
1874	chr5	169015478	169015479	rs116483731	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	5q35.1	NR	rs116483731-A	0.008044999999999969	8E-17		0.043303	[0.033-0.054] unit increase	Affymetrix [16582965] (imputed)	N
1874	chr5	169015478	169015479	rs116483731	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	5q35.1	NR	rs116483731-A	0.008020999999999945	3E-13		0.0502433	[0.037-0.064] unit increase	Affymetrix [16582614] (imputed)	N
1874	chr5	169061461	169061462	rs264864	33594131	Donati G	2021-02-16	Sci Rep	Evidence for specificity of polygenic contributions to attainment in English, maths and science during adolescence.	Academic attainment (science)	6,089 European ancestry adolescents	NA	5q35.1	NR	rs264864-G	NR	7E-7		0.097	[0.058-0.136] unit increase	Illumina [6319684] (imputed)	N
1874	chr5	169061461	169061462	rs264864	33594131	Donati G	2021-02-16	Sci Rep	Evidence for specificity of polygenic contributions to attainment in English, maths and science during adolescence.	Academic attainment (maths)	6,017 European ancestry adolescents	NA	5q35.1	NR	rs264864-G	NR	2E-6		0.1	[0.057-0.143] unit decrease	Illumina [6319684] (imputed)	N
1874	chr5	169074055	169074056	rs169082	18464913	Melzer D	2008-05-09	PLoS Genet	A genome-wide association study identifies protein quantitative trait loci (pQTLs).	Protein quantitative trait loci	1,200 European ancestry individuals	up to 4,590 European ancestry individuals	5q35.1	DOCK2	rs169082-?	0.48	1E-6	(Leptin)			Illumina [496032]	N
1875	chr5	169122176	169122177	rs35316183	29868124	Wu Y	2018-05-16	Front Genet	Genetics of Obesity Traits: A Bivariate Genome-Wide Association Analysis.	Body mass index and waist-hip ratio (pleiotropy)	139 Han Chinese ancestry dizygotic twin pairs	NA	5q35.1	DOCK2	rs35316183-?	NR	3E-6		0.01	[NR] unit decrease	Illumina [1365181]	N
1875	chr5	169135661	169135662	rs2449565	33772158	Hoggart C	2021-03-26	Eur J Hum Genet	Identification of novel locus associated with coronary artery aneurysms and validation of loci for susceptibility to Kawasaki disease.	Coronary artery aneurysm in Kawasaki disease	200 European ancestry cases, 276 European ancestry controls	NA	5q35.1	DOCK2	rs2449565-G	0.61	2E-6		2.3	[1.6-3.3]	Illumina [4873589] (imputed)	N
1875	chr5	169172132	169172133	rs76551843	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	5q35.1	NR	rs76551843-A	NR	2E-8		1.311	[1.19-1.44]	Affymetrix, Illumina [29235255] (imputed)	N
1875	chr5	169172132	169172133	rs76551843	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	5q35.1	DOCK2	rs76551843-A	0.99	2E-8		1.31	[1.19-1.44]	Illumina [20370935] (imputed)	N
1876	chr5	169235445	169235446	rs36037302	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Verbal-numerical reasoning	171,304 British ancestry individuals	NA	5q35.1		rs36037302-?	NR	2E-8				NR [7857346] (imputed)	N
1876	chr5	169239707	169239708	rs6860963	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	5q35.1	NR	rs6860963-T	NR	6E-9		5.829	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1876	chr5	169264970	169264971	rs391164	35131881	Testori A	2022-02-07	Cancer Epidemiol Biomarkers Prev	Genetic analysis in African American children supports ancestry specific neuroblastoma susceptibility.	Neuroblastoma	254 African American cases, 2,990 African American controls	NA	5q35.1		rs391164-G	NR	1E-5		0.4005	unit increase	Illumina [NR] (imputed)	N
1876	chr5	169271148	169271149	rs12515788	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Platelet-derived growth factor BB levels	8,293 Finnish ancestry individuals	NA	5q35.1	NR	rs12515788-C		7E-6		0.0879	[0.05-0.126] SD units decrease	NR [10700000] (imputed)	N
1876	chr5	169273556	169273557	rs30080	29884306	Workalemahu T	2018-04-16	Placenta	Genetic variations and risk of placental abruption: A genome-wide association study and meta-analysis of genome-wide association studies.	Placental abruption	959 cases, 1553 controls	NA	5q35.1	DOCK2	rs30080-?		5E-6		1.369863	[1.2-1.59]	Illumina [up to 4983952] (imputed)	N
1876	chr5	169281680	169281681	rs7729471	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	5q35.1	NR	rs7729471-?	NR	4E-38				Affymetrix [NR]	N
1876	chr5	169288731	169288732	rs2291228	29884306	Workalemahu T	2018-04-16	Placenta	Genetic variations and risk of placental abruption: A genome-wide association study and meta-analysis of genome-wide association studies.	Placental abruption	959 cases, 1553 controls	NA	5q35.1	FAM196B	rs2291228-A		8E-6		0.729927	[1.19-1.57]	Illumina [up to 4983952] (imputed)	N
1876	chr5	169289205	169289206	rs10866641	34002096	Mullins N	2021-05-17	Nat Genet	Genome-wide association study of more than 40,000 bipolar disorder cases provides new insights into the underlying biology.	Bipolar disorder	41,917 European ancestry cases, 371,549 European ancestry controls	NA	5q35.1	DOCK2	rs10866641-T	0.575	3E-11		1.0646	[1.05-1.08]	Affymetrix, Illumina [7549318] (imputed)	N
1876	chr5	169343216	169343217	rs11742527	33169155	Bigdeli TB	2020-11-10	Schizophr Bull	Genome-Wide Association Studies of Schizophrenia and Bipolar Disorder in a Diverse Cohort of US Veterans.	Bipolar disorder	24,267 European ancestry cases, 3,027 African American cases, 1,032 Latino cases, 79,492 European ancestry controls, 8,097 African American controls, 3,090 Latino controls	NA	5q35.1	FAM196B	rs11742527-G	NR	2E-8		1.06	[1.04-1.08]	Affymetrix [up to 49134253] (imputed)	N
1877	chr5	169431114	169431115	rs4867908	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	5q35.1		rs4867908-A	NR	1E-9		0.0138	[0.0093-0.0183] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
1877	chr5	169453091	169453092	rs114183953	27236921	Rautanen A	2016-06-02	Am J Hum Genet	Polymorphism in a lincRNA Associates with a Doubled Risk of Pneumococcal Bacteremia in Kenyan Children.	Pneumococcal bacteremia	429 African ancestry cases, 2,677 African ancestry controls	113  African ancestry cases, 1,336 African ancestry controls	5q35.1	DOCK2	rs114183953-?	NR	2E-6		2.77	[NR]	Affymetrix [up to 10996499] (imputed)	N
1877	chr5	169461546	169461547	rs3763048	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	5q35.1	NR	rs3763048-C	0.672342024379233	9E-6	(IGP19)	0.1425	[0.08-0.205] unit decrease	Illumina [~ 2500000] (imputed)	N
1878	chr5	169538007	169538008	rs7724629	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Superior frontal gyrus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	5q35.1	NR	rs7724629-?		6E-6				Illumina [4322238] (imputed)	N
1878	chr5	169542599	169542600	rs1895302	23648065	Low SK	2013-05-04	Cancer Sci	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (all platinum-based drugs)	428 Japanese ancestry cases, 743 Japanese ancestry controls	NA	5q35.1	FOXI1	rs1895302-C	0.478	7E-6	(Dominant model)	1.34	[1.132-1.587]	Illumina [733202]	N
1878	chr5	169591486	169591487	rs4562056	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	5q35.1		rs4562056-T	NR	5E-10		1.04	[1.03-1.05]	Affymetrix, Illumina [NR] (imputed)	N
1878	chr5	169591486	169591487	rs4562056	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	5q35.1	intergenic	rs4562056-T	0.33	5E-10	(EA)	1.05	[1.03-1.07] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
1879	chr5	169621167	169621168	rs10866646	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Perceived intensity of glucose	1,757 European ancestry twins	NA	5q35.1	CTB-27N1.1	rs10866646-T	0.14	2E-6		0.24	[0.14-0.34] unit increase	Illumina [4381914] (imputed)	N
1879	chr5	169624771	169624772	rs13153995	24927181	Navarini AA	2014-06-13	Nat Commun	Genome-wide association study identifies three novel susceptibility loci for severe Acne vulgaris.	Acne (severe)	1,893 European ancestry cases, 5,132 European ancestry controls	2,063 European ancestry cases, 1,970 European ancestry controls	5q35.1	LOC257358, MIR378E, AK055811, Mir_548, C5orf58, DL490294, DOCK2, FAM196B, FOXI1, KCNIP1, KCNMB1, LCP2	rs13153995-C	0.2095	3E-6		1.22	[1.11-1.33]	Illumina [7300000] (imputed)	N
1879	chr5	169645235	169645236	rs11743438	33409738	Abdel-Wahab N	2021-01-07	Cancer Immunol Immunother	Genetic determinants of immune-related adverse events in patients with melanoma receiving immune checkpoint inhibitors.	Response to immune checkpoint inhibitors in melanoma (immune-related adverse events)	43 European ancestry cases, 1 case, 42 European ancestry controls, 1 African ancestry control, 2 controls	NA	5q35.1	GABRP	rs11743438-A	NR	6E-6		4.281	[2.286-8.016]	Illumina [599931]	N
1879	chr5	169691626	169691627	rs9313497	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	5q35.1		rs9313497-C	NR	9E-9		0.0186	[0.012-0.025] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
1879	chr5	169691626	169691627	rs9313497	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	5q35.1	LCP2	rs9313497-C	0.067527	3E-13		0.03205419	[0.023-0.041] unit decrease	Affymetrix [93095623] (imputed)	N
1879	chr5	169691626	169691627	rs9313497	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	5q35.1	LCP2	rs9313497-C	0.0675210000000001	5E-14		0.03319888	[0.025-0.042] unit decrease	Affymetrix [93095623] (imputed)	N
1879	chr5	169691626	169691627	rs9313497	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q35.1	NR	rs9313497-C	0.0772469	1E-12				Affymetrix, Illumina [19872809] (imputed)	N
1879	chr5	169691626	169691627	rs9313497	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	5q35.1	NR	rs9313497-C	0.067808	3E-14		0.030253	[0.022-0.038] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
1879	chr5	169691626	169691627	rs9313497	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	5q35.1		rs9313497-?	NR	2E-13				NR [~ 8900000] (imputed)	N
1879	chr5	169701016	169701017	rs36094591	32009195	Condreay LD	2020-02-03	Rheumatol Int	Pharmacogenetic investigation of efficacy response to mepolizumab in eosinophilic granulomatosis with polyangiitis.	Accrued duration of remission in mepolizumab-treated eosinophilic granulomatosis with polyangiitis	61 individuals	NA	5q35.1	NR	rs36094591-?	NR	2E-6		0.8653	[0.54-1.19] unit increase	Affymetrix [7154205] (imputed)	N
1879	chr5	169722896	169722897	rs3804250	33539483	Li Z	2021-02-04	PLoS One	Bivariate genome-wide association study (GWAS) of body mass index and blood pressure phenotypes in northern Chinese twins.	Body mass index and diastolic blood pressure (bivariate analysis)	274 Chinese ancestry dizygotic twins	NA	5q35.1	LCP2	rs3804250-?	NR	5E-6				Illumina [7401356] (imputed)	N
1879	chr5	169731616	169731617	rs62385074	26503814	Hardin M	2016-10-27	Pharmacogenomics J	A genome-wide analysis of the response to inhaled ?2-agonists in chronic obstructive pulmonary disease.	Response to bronchodilator in chronic obstructive pulmonary disease (change in FEV1)	5,766 European ancestry cases, 811 African American cases	NA	5q35.1	LCP2	rs62385074-G	0.96	6E-7	(BDRBASE, AA)	10.17	[6.19-14.15] unit decrease	Illumina [NR] (imputed)	N
1880	chr5	169779324	169779325	rs76131026	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (positive Marder score)	1,390 European ancestry cases	NA	5q35.1		rs76131026-G	NR	1E-8	(GLM)	10.692	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
1880	chr5	169779324	169779325	rs76131026	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (PANSS score)	1,390 European ancestry individuals	NA	5q35.1		rs76131026-G	NR	8E-8	(GLM)	30.5578	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
1880	chr5	169801108	169801109	rs144322502	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	5q35.1	NR	rs144322502-?	NR	2E-6		14.277	NR unit increase	Affymetrix [at least 600000] (imputed)	N
1880	chr5	169809900	169809901	rs76888257	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	5q35.1		rs76888257-?	NR	6E-9				NR [~ 8900000] (imputed)	N
1880	chr5	169816770	169816771	rs75070487	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (negative Marder score)	1,390 European ancestry cases	NA	5q35.1		rs75070487-G	NR	2E-7	(GLM)	4.4176	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
1880	chr5	169854160	169854161	rs115425245	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q35.1	NR	rs115425245-G	0.0122	2E-8	(FERMT2)	0.1312	NR unit increase	Illumina [1671387] (imputed)	N
1881	chr5	169902432	169902433	rs80283856	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Short-term memory (digit-span task)	2,591 European ancestry individuals	NA	5q35.1	KCNIP1	rs80283856-T	0.927301857	4E-6		0.256601	[0.15-0.37] unit decrease	Illumina [6952813] (imputed)	N
1881	chr5	169914963	169914964	rs10039039	31219150	Ekenberg C	2019-06-13	J Infect Dis	Single nucleotide polymorphisms in HLA alleles are associated with HIV-1 viral load in demographically diverse, ART-naive participants from the START trial.	Pre-treatment viral load in HIV-1 infection	1,398 European ancestry individuals, 572 Black individuals, 418 Hispanic individuals, 13 Asian ancestry individuals, 39 individuals	NA	5q35.1	KCNIP1	rs10039039-T	0.083	1E-16		0.35	[0.27-0.43] unit decrease	Affymetrix [339439]	N
1881	chr5	169924694	169924695	rs4867606	29884306	Workalemahu T	2018-04-16	Placenta	Genetic variations and risk of placental abruption: A genome-wide association study and meta-analysis of genome-wide association studies.	Placental abruption	959 cases, 1553 controls	NA	5q35.1	KCNIP1	rs4867606-A		5E-6		1.82	[1.41-2.36]	Illumina [up to 4983952] (imputed)	N
1881	chr5	169950393	169950394	rs11957313	19010793	Baranzini SE	2008-11-14	Hum Mol Genet	Genome-wide association analysis of susceptibility and clinical phenotype in multiple sclerosis.	Normalized brain volume	753 European ancestry cases, 883 European ancestry controls	NA	5q35.1	KCNIP1	rs11957313-?	0.13	9E-6			[NR]	Illumina [551642]	N
1881	chr5	169956578	169956579	rs17649817	28779025	Alberts R	2017-08-04	Gut	Genetic association analysis identifies variants associated with disease progression in primary sclerosing cholangitis.	Liver transplant-free survival in primary sclerosing cholangitis (time to event)	874 European ancestry liver transplantation cases , 2,444 European ancestry liver transplant-free cases	NA	5q35.1	LCP2, LINC01366, KCNIP1, KCNMB1, CTD2270F17.1, LOC105377716	rs17649817-A	NR	7E-8				Illumina [130422]	N
1882	chr5	170092619	170092620	rs4868009	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	ER4 sp002437735 abundance in stool	5,959 Finnish ancestry individuals	NA	5q35.1		rs4868009-A	0.330007	4E-8		0.0617405	[0.04-0.084] unit increase	Illumina [7980478] (imputed)	N
1882	chr5	170099076	170099077	rs4868011	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	California verbal learning test score	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	5q35.1	KCNIP1	rs4868011-C	NR	9E-6		2.0159097	[1.12-2.91] unit decrease	Illumina [> 6200000] (imputed)	N
1883	chr5	170226564	170226565	rs150927487	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		GABRP	rs150927487-?	NR	6E-9	(female)	1.80793	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1883	chr5	170240422	170240423	rs11134654	23470693	Zeng Z	2013-03-07	J Dent Res	Genome-wide association studies of pit-and-fissure- and smooth-surface caries in permanent dentition.	Smooth-surface caries	982 European ancestry individuals	NA	5q35.1	NR	rs11134654-A	0.1735	2E-7		4.6139	[NR] unit increase	Illumina [1200000] (imputed)	N
1884	chr5	170263362	170263363	rs11745293	33783297	Zai CC	2021-03-30	World J Biol Psychiatry	Genome-wide association study of suicidal behaviour severity in mood disorders.	Suicide attempt severity in mood disorders	719 European ancestry bipolar disorder cases, 2,787 European ancestry major depressive disorder cases	NA	5q35.1	NR	rs11745293-?	NR	7E-7		4.96	[NR] z score increase	Illumina [6737359] (imputed)	N
1884	chr5	170299915	170299916	rs10042827	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	5q35.1	NR	rs10042827-C	0.681	9E-10		0.016717084	[0.011-0.022] unit increase	NR [~ 10000000] (imputed)	N
1884	chr5	170319133	170319135	rs143842890	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	5q35.1		rs143842890-C	NR	4E-8		0.0147	[0.0094-0.02] unit increase	Affymetrix, Illumina [20529698] (imputed)	N
1884	chr5	170323681	170323682	rs2339171	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	5q35.1	NR	rs2339171-A	0.687	2E-13		0.00854707	[0.0063-0.0108] unit increase	NR [9732723] (imputed)	N
1884	chr5	170372816	170372817	rs973605	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	5q35.1	NR	rs973605-T	0.691	8E-9		0.00912252	[0.006-0.0122] unit decrease	NR [9732723] (imputed)	N
1884	chr5	170384112	170384113	rs112551059	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q35.1	NR	rs112551059-A	0.01394	3E-9	(LRG1)	0.05583	NR unit increase	Illumina [1671387] (imputed)	N
1884	chr5	170384112	170384113	rs112551059	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q35.1	NR	rs112551059-A	0.01394	2E-8	(SERPINA1)	2.623	NR unit increase	Illumina [1671387] (imputed)	N
1884	chr5	170389531	170389532	rs3849710	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	5q35.1	Intergenic	rs3849710-A	0.6852	1E-11	(MTAG)	0.012	[0.0085-0.0155] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1884	chr5	170389531	170389532	rs3849710	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	5q35.1	Intergenic	rs3849710-A	0.6856	4E-10	(MTAG)	0.0088	[0.0061-0.0115] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1884	chr5	170392902	170392903	rs13166557	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	5q35.1	Intergenic	rs13166557-T	0.3488	5E-9		0.0139	[0.0092-0.0186] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1885	chr5	170395819	170395820	rs11134672	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	5q35.1	RANBP17	rs11134672-A	0.6874	3E-10		0.013623063	[0.0094-0.0179] unit increase	Affymetrix [11514654] (imputed)	N
1885	chr5	170408565	170408566	rs10055216	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	5q35.1	Intergenic	rs10055216-A	0.3151	5E-8	(MTAG)	0.0106	[0.0069-0.0143] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1885	chr5	170428978	170428979	rs10068599	33239738	Didriksen M	2020-11-25	Commun Biol	Large genome-wide association study identifies three novel risk variants for restless legs syndrome.	Restless legs syndrome	10,257 European ancestry cases, 470,725 European ancestry controls	up to 15,126 European ancestry cases, up to 95,725 European ancestry controls	5q35.1	RANBP17	rs10068599-T	0.33	7E-10		1.09	[1.06-1.12]	Affymetrix, Illumina [15838848] (imputed)	N
1885	chr5	170439071	170439072	rs10070758	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	5q35.1		rs10070758-G	0.285	3E-13		0.009	[0.007-0.011] unit decrease	NR [NR] (imputed)	N
1885	chr5	170458380	170458381	rs4242161	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	5q35.1		rs4242161-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1885	chr5	170459674	170459675	rs7730898	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	5q35.1	RANBP17	rs7730898-A	0.7431	2E-14		0.0184	[0.014-0.023] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1885	chr5	170459674	170459675	rs7730898	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	5q35.1	NA	rs7730898-A	0.7318	7E-20		0.0166	[0.013-0.02] unit increase	NR [~ 27400000] (imputed)	N
1885	chr5	170459674	170459675	rs7730898	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	5q35.1	NR	rs7730898-A	NR	7E-22		0.017	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
1885	chr5	170461436	170461437	rs114994102	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	5q35.1	NR	rs114994102-G	0.056	8E-6	(IFNalpha_STAT1_of_CD56brightCD16n)			Illumina [5084123] (imputed)	N
1885	chr5	170484974	170484975	rs810496	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	5q35.1		rs810496-A	0.3148	4E-8	(conditional-joint)	0.0083	[0.0054-0.0112] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1885	chr5	170486142	170486143	rs245753	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	5q35.1	RANBP17	rs245753-T	0.318184	2E-9		0.0132945	[0.0089-0.0177] unit increase	NR [16516521] (imputed)	N
1885	chr5	170495157	170495158	rs779655	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	5q35.1	NR	rs779655-?	NR	8E-18				Affymetrix [~ 8270000] (imputed)	N
1885	chr5	170506140	170506141	rs812949	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	5q35.1		rs812949-C	0.73	4E-10				NR [NR] (imputed)	N
1885	chr5	170506140	170506141	rs812949	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	5q35.1		rs812949-C	0.73	6E-16		0.014	% increase	NR [NR] (imputed)	N
1885	chr5	170521751	170521752	rs78059257	31151762	Gelernter J	2019-04-08	Biol Psychiatry	Genome-wide Association Study of Maximum Habitual Alcohol Intake in >140,000 U.S. European and African American Veterans Yields Novel Risk Loci.	Maximum habitual alcohol consumption	126,936 European ancestry individuals, 17,029 African American individuals	NA	5q35.1	NR	rs78059257-A	NR	4E-6	(AA)	0.191557	[0.11-0.27] unit decrease	Affymetrix [up to 6007810] (imputed)	N
1886	chr5	170526093	170526094	rs245768	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	5q35.1	NR	rs245768-A	0.309964	8E-11		0.0137615	[0.0096-0.0179] unit decrease	NR [NR]	N
1886	chr5	170529334	170529335	rs245769	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	5q35.1		rs245769-?	NR	1E-17				NR [~ 8900000] (imputed)	N
1886	chr5	170530929	170530930	rs245774	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	5q35.1		rs245774-A	0.272	7E-9		0.013	[0.0091-0.0169] unit decrease	Affymetrix [up to 90000000] (imputed)	N
1886	chr5	170530929	170530930	rs245774	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	5q35.1	RANBP17	rs245774-A	0.2717	1E-11		0.002	[0.0014-0.0026] unit increase	Affymetrix [15275733] (imputed)	N
1886	chr5	170532104	170532105	rs245775	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	5q35.1		rs245775-G	NR	8E-16		0.0195	[0.015-0.024] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1886	chr5	170532104	170532105	rs245775	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	5q35.1	NR	rs245775-A	0.2708	2E-12		0.019589582	[0.014-0.025] unit decrease	Affymetrix [10549349] (imputed)	N
1886	chr5	170539781	170539782	rs114815715	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		RANBP17	rs114815715-?	NR	4E-8	(female)	1.73566	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1886	chr5	170599326	170599327	rs2053682	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	5q35.1	NA	rs2053682-A	0.6784	3E-20		0.017	[0.013-0.021] unit increase	NR [~ 27400000] (imputed)	N
1886	chr5	170599326	170599327	rs2053682	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	5q35.1	NA	rs2053682-A	0.6784	3E-20		0.017	[0.013-0.021] unit increase	NR [~ 27400000] (imputed)	N
1886	chr5	170612545	170612546	rs2339234	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	5q35.1	RANBP17	rs2339234-G	0.316996	7E-9		0.0119298	[0.0079-0.016] unit increase	Affymetrix [NR] (imputed)	N
1886	chr5	170623390	170623391	rs11134679	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		5q35.1	RANBP17	rs11134679-A	0.3153	5E-17		0.0124028	[0.0095-0.0153] unit decrease	Affymetrix [12370749]	N
1887	chr5	170683133	170683134	rs2913873	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	5q35.1	NR	rs2913873-G	0.1435	2E-8		0.0316	[0.021-0.043] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1887	chr5	170712473	170712474	rs74402020	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	5q35.1	NR	rs74402020-?	NR	3E-10				Affymetrix [~ 8270000] (imputed)	N
1887	chr5	170720732	170720733	rs2278255	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral fat	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	5q35.1	RANBP17	rs2278255-G	0.06	5E-6	(men)			Affymetrix, Illumina [2500000] (imputed)	N
1887	chr5	170738835	170738836	rs918472	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	5q35.1	TLX3	rs918472-G	0.283869	2E-10		0.00988359	[0.0068-0.0129] unit decrease	Affymetrix [12370749]	N
1887	chr5	170756361	170756362	rs187107949	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial squamous cell lung carcinoma	367 European ancestry cases, 31,563 European ancestry controls	NA	5q35.1	NR	rs187107949-G	0.034	6E-6		2.47	[1.67-3.65]	Illumina [7959153] (imputed)	N
1887	chr5	170778823	170778824	rs7715167	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	5q35.1	NR	rs7715167-T	0.3871	7E-12				NR [9056863] (imputed)	N
1887	chr5	170778823	170778824	rs7715167	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	5q35.1	NR	rs7715167-T	0.386	2E-10	(total)	516.4874	[356.89-676.08] unit decrease	Affymetrix, Illumina [NR]	N
1888	chr5	170802442	170802443	rs62381644	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	5q35.1	NPM1, FGF18	rs62381644-?		4E-11				NR [7428630] (imputed)	N
1888	chr5	170815520	170815521	rs78276384	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	5q35.1	NPM1	rs78276384-T	0.1511	3E-7		0.0493	[0.03-0.068] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1888	chr5	170819010	170819011	rs767121118	34620984	Skuladottir AT	2021-10-07	Commun Biol	A genome-wide meta-analysis uncovers six sequence variants conferring risk of vertigo.	Vertigo	48,072 European ancestry cases, 894,541 European ancestry controls	NA	5q35.1		rs767121118-C	NR	2E-6		1.70182		Affymetrix, Illumina [62056310] (imputed)	N
1888	chr5	170838283	170838284	rs10040865	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	5q35.1	Intergenic	rs10040865-A	0.379	2E-8	(MTAG)	0.0103	[0.0068-0.0138] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1888	chr5	170841746	170841747	rs62383977	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	5q35.1	Intergenic	rs62383977-T	0.3431	2E-8	(MTAG)	0.0097	[0.0064-0.013] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1888	chr5	170842426	170842428	rs74274428	33830993	Johnston KJA	2021-04-08	PLoS Genet	Sex-stratified genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	209,093 British ancestry women	NA	5q35.1	NPM1, FGF18	rs74274428-CA	NR	3E-8		0.02	[0.012-0.028] unit increase	NR [NR] (imputed)	N
1888	chr5	170842981	170842982	rs10065120	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	5q35.1		rs10065120-T	0.38	3E-13		7.29	z score increase	Affymetrix [9061022] (imputed)	N
1888	chr5	170855334	170855335	rs75831829	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	5q35.1	FGF18	rs75831829-T	NR	6E-9		0.0211401	[0.014-0.028] unit decrease	Affymetrix [323123] (imputed)	N
1888	chr5	170858193	170858194	rs75073573	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	5q35.1		rs75073573-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1888	chr5	170861436	170861437	rs11738946	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	5q35.1	NR	rs11738946-?	NR	4E-12				Affymetrix [~ 8270000] (imputed)	N
1888	chr5	170864020	170864021	rs4073717	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	5q35.1		rs4073717-T	NR	1E-21		0.0204	[0.016-0.025] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1888	chr5	170864020	170864021	rs4073717	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	5q35.1	FGF18	rs4073717-T	NR	3E-11		0.0233997	[0.017-0.03] unit decrease	Affymetrix [321016] (imputed)	N
1888	chr5	170864020	170864021	rs4073717	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	5q35.1	FGF18	rs4073717-T	0.2016	6E-34		0.0286	[0.024-0.033] unit decrease	Affymetrix [18391927] (imputed)	N
1888	chr5	170864020	170864021	rs4073717	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	5q35.1	FGF18	rs4073717-?	NR	1E-15		0.0317294	[0.024-0.04] unit decrease	Illumina [27896057] (imputed)	N
1888	chr5	170864020	170864021	rs4073717	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5q35.1		rs4073717-?	NR	6E-68				NR [~ 8900000] (imputed)	N
1888	chr5	170864020	170864021	rs4073717	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	5q35.1	NR	rs4073717-?	NR	1E-9	(male)	0.26291	[0.18-0.35] unit decrease	Affymetrix [7794483] (imputed)	N
1888	chr5	170864020	170864021	rs4073717	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	5q35.1	NR	rs4073717-?	NR	1E-13		0.20316	[0.15-0.26] unit decrease	Affymetrix [7794483] (imputed)	N
1888	chr5	170868621	170868622	rs78810186	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	5q35.1	FGF18	rs78810186-T	0.11	1E-12		0.74	[0.54-0.94] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1888	chr5	170868621	170868622	rs78810186	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	5q35.1	FGF18	rs78810186-T	0.1116	5E-13		0.7862	[0.57-1] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1888	chr5	170870458	170870459	rs72829774	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	5q35.1	FGF18	rs72829774-A	0.0381291449665093	7E-6	(G_Aestuariispira_HB)	0.712007	[0.4-1.02] unit increase	Illumina [7711310] (imputed)	N
1888	chr5	170870648	170870649	rs6867594	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	5q35.1		rs6867594-C	0.386609	1E-8		0.0158813	[0.01-0.021] unit decrease	Illumina [13479924] (imputed)	N
1888	chr5	170870648	170870649	rs6867594	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	5q35.1	FGF18	rs6867594-C	NR	3E-9		0.01698	[0.011-0.023] unit decrease	Affymetrix [321016] (imputed)	N
1888	chr5	170871073	170871074	rs3884606	34450027	Boer CG	2021-08-24	Cell	Deciphering osteoarthritis genetics across 826,690 individuals from 9 populations.	Osteoarthritis of the hip or knee	88,842 European ancestry cases, 397,208 European ancestry controls, 899 Japanese ancestry cases, 3,396 Japanese ancestry controls	NA	5q35.1		rs3884606-A	0.5229	9E-10		0.96329075	[0.951842423-0.974876756]	Affymetrix, Illumina [NR] (imputed)	N
1888	chr5	170871073	170871074	rs3884606	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Osteoarthritis of the hip or knee	39,427 European ancestry cases, 378,169 European ancestry controls	NA	5q35.1	NR	rs3884606-G	0.49	8E-9		1.04	[1.03-1.06]	Affymetrix, Illumina [up to 17000000] (imputed)	N
1888	chr5	170875096	170875097	rs4620037	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	5q35.1	NR	rs4620037-?	NR	3E-6		0.03092323	[0.018-0.044] unit decrease	Illumina [34656550] (imputed)	N
1888	chr5	170875096	170875097	rs4620037	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	5q35.1	FGF18	rs4620037-A	0.796	1E-18		0.032	[0.024-0.04] unit increase	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
1888	chr5	170888144	170888145	rs11740345	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	5q35.1	FGF18	rs11740345-T	0.2148	8E-8		0.0443	[0.028-0.061] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1888	chr5	170894318	170894319	rs112894747	34124712	Sherva R	2021-02-28	Explor Med	Genome-wide association study of phenotypes measuring progression from first cocaine or opioid use to dependence reveals novel risk genes.	Cocaine dependence (time to event)	3,554 African American cases, 478 African American controls	572 African American cases, 416 African American controls	5q35.1	FGF18, LOC105377721	rs112894747-C	0.03	5E-7		1.41	[NR]	Illumina [NR] (imputed)	N
1888	chr5	170897207	170897208	rs3097847	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	5q35.1	NR	rs3097847-?	NR	2E-6	(EA)	0.4669	[0.28-0.65] unit decrease	Illumina [up to 11892802] (imputed)	N
1888	chr5	170897207	170897208	rs3097847	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	5q35.1	NR	rs3097847-?	NR	1E-6	(EA)	0.3852	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1888	chr5	170901462	170901463	rs10059996	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	5q35.1	FGF18	rs10059996-T	0.3548	2E-6		0.0129	[0.0076-0.0182] unit decrease	Affymetrix [19819130] (imputed)	N
1888	chr5	170901462	170901463	rs10059996	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	5q35.1	FGF18	rs10059996-T	0.3548	2E-42		0.0352	[0.03-0.04] unit decrease	Affymetrix [19819130] (imputed)	N
1888	chr5	170901462	170901463	rs10059996	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	5q35.1	FGF18	rs10059996-T	0.3548	4E-8		0.0139	[0.009-0.0188] unit decrease	Affymetrix [19819130] (imputed)	N
1888	chr5	170901462	170901463	rs10059996	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	5q35.1		rs10059996-?	NR	4E-52				NR [~ 8900000] (imputed)	N
1888	chr5	170901585	170901586	rs12519165	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	5q35.1	NR	rs12519165-A	0.39	9E-8		1.1	[1.06-1.13]	Affymetrix [9886854] (imputed)	N
1888	chr5	170901585	170901586	rs12519165	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	5q35.1	NR	rs12519165-A	0.39	1E-9			[NR]	Affymetrix [9886854] (imputed)	N
1888	chr5	170901585	170901586	rs12519165	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	5q35.1	NR	rs12519165-A	0.39	5E-10		1.08	[1.06-1.11]	Affymetrix [9886854] (imputed)	N
1888	chr5	170901585	170901586	rs12519165	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	5q35.1	NR	rs12519165-A	0.39	2E-9			[NR]	Affymetrix [9886854] (imputed)	N
1888	chr5	170901585	170901586	rs12519165	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in non-current smokers	16,488 European ancestry cases, 169,688 European ancestry controls	NA	5q35.1	NR	rs12519165-A	0.39	6E-10		1.08	[1.06-1.11]	Affymetrix [9886854] (imputed)	N
1888	chr5	170901585	170901586	rs12519165	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in never smokers	8,631 European ancestry cases, 120,544 European ancestry controls	NA	5q35.1	NR	rs12519165-A	0.39	1E-7		1.1	[1.06-1.13]	Affymetrix [9886854] (imputed)	N
1888	chr5	170901585	170901586	rs12519165	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	5q35.1	FGF18	rs12519165-A	0.38	1E-9		1.07	[1.05-1.09]	Affymetrix, Illumina [6224355] (imputed)	N
1888	chr5	170905671	170905672	rs6886932	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	5q35.1	NR	rs6886932-?	NR	4E-8	(right inferior temporal)			NR [9227495] (imputed)	N
1888	chr5	170909409	170909410	rs11745375	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (unclassified genus belonging to family Erysipelotrichaceae)	1,068 Japanese ancestry individuals	NA	5q35.1	intergenic	rs11745375-T	0.32	5E-6	(male)	0.213	[0.12-0.3] unit decrease	Illumina [6380737] (imputed)	N
1888	chr5	170909409	170909410	rs11745375	29436472	Casalone E	2018-02-07	Ann Rheum Dis	A novel variant in GLIS3 is associated with osteoarthritis.	Osteoarthritis of the knee (with total joint replacement)	2,188 European ancestry cases, 9,939 European ancestry healthy controls	2,281 European ancestry cases, 9,194 European ancestry healthy controls	5q35.1	NR	rs11745375-C	0.529316	5E-6		1.0309278	[1.02-1.04]	Illumina [270934]	N
1889	chr5	170931820	170931821	rs34851368	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 2 levels	252 European ancestry individuals	NA	5q35.1		rs34851368-A	NR	5E-6		0.67748	[0.39-0.96] unit decrease	Illumina [NR] (imputed)	N
1889	chr5	170931980	170931981	rs56119376	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota (alpha diversity)	858 Metropolitan French ancestry individuals	NA	5q35.1	NR	rs56119376-?	NR	6E-6	(Richness)	12.6413	[7.22-18.06] unit decrease	Illumina [5293637] (imputed)	N
1889	chr5	170945691	170945692	rs371849903	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gastric cancer	1,029 European ancestry cases, 475,087 European ancestry controls, 7,921 East Asian ancestry cases, 159,201 East Asian ancestry controls	NA	5q35.1		rs371849903-G	NR	1E-8		0.9189	[0.6-1.23] unit increase	Affymetrix, Illumina [25843697] (imputed)	N
1889	chr5	171008173	171008174	rs17681353	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	5q35.1		rs17681353-?	NR	2E-16				NR [~ 8900000] (imputed)	N
1889	chr5	171015622	171015623	rs6892884	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5q35.1		rs6892884-?	NR	3E-32				NR [~ 8900000] (imputed)	N
1889	chr5	171015622	171015623	rs6892884	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	5q35.1	FBXW11	rs6892884-?	NR	4E-8	(Conditioned on rs12153391)		[NR]	Affymetrix, Illumina [2834208] (imputed)	N
1889	chr5	171024599	171024600	rs11134709	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	5q35.1	NR	rs11134709-?	NR	8E-9				Affymetrix [~ 8270000] (imputed)	N
1889	chr5	171026157	171026158	rs6898981	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	5q35.1	FGF18, SMIM23	rs6898981-?	NR	3E-11		0.023310745	[0.016-0.03] unit increase	Illumina [27896057] (imputed)	N
1890	chr5	171076226	171076227	rs254893	19197348	Lowe JK	2009-02-06	PLoS Genet	Genome-wide association studies in an isolated founder population from the Pacific Island of Kosrae.	Quantitative traits	2,906 Kosraen individuals	NA	5q35.1	intergenic	rs254893-A	0.06	6E-6	(DBP)	0.58	[NR] mm Hg decrease	Affymetrix [408775]	N
1890	chr5	171096728	171096729	rs26341	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 151)	19,670 European ancestry individuals	NA	5q35.1		rs26341-?	NR	6E-14				NR [9705931] (imputed)	N
1890	chr5	171103317	171103318	rs931117	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Corpus callosum anterior volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	5q35.1	NR	rs931117-?		5E-6				Illumina [4322238] (imputed)	N
1890	chr5	171120025	171120026	rs13184816	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	5q35.1	NR	rs13184816-A	NR	1E-8		5.737	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1890	chr5	171128463	171128464	rs6555969	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	8,072 individuals	NA	5q35.1		rs6555969-T	0.31	8E-6				NR [13131314] (imputed)	N
1890	chr5	171128463	171128464	rs6555969	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	5q35.1		rs6555969-T	0.31	1E-96		20.85	z score increase	Affymetrix [9061022] (imputed)	N
1890	chr5	171128463	171128464	rs6555969	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	5q35.1		rs6555969-T	0.31	1E-27		10.9	z score increase	Affymetrix [9061022] (imputed)	N
1890	chr5	171128463	171128464	rs6555969	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	5q35.1	NR	rs6555969-T	0.3179	1E-11				NR [9056863] (imputed)	N
1890	chr5	171128463	171128464	rs6555969	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	5q35.1	NR	rs6555969-T	0.3179	1E-17				NR [9056863] (imputed)	N
1890	chr5	171128463	171128464	rs6555969	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	5q35.1		rs6555969-?	NR	1E-18				NR [9705931] (imputed)	N
1890	chr5	171128463	171128464	rs6555969	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 56)	4,680 European ancestry individuals	3,566 European ancestry individuals	5q35.1		rs6555969-T	0.318681319	1E-13				Illumina [7417619] (imputed)	N
1890	chr5	171170640	171170641	rs17568725	25705159	Hong Y	2014-12-31	Genomics Inform	Genome-wide association study of hepatitis in korean populations.	Hepatitis	1,500 Korean ancestry cases, 1,500 Korean ancestry controls	NA	5q35.1	intergenic	rs17568725-?	NR	1E-8		1.1111112	[NR]	NR [352000]	N
1890	chr5	171179335	171179336	rs153752	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	5q35.1	AC011410.1	rs153752-G	NR	4E-9		0.0185003	[0.012-0.025] unit increase	Affymetrix [323123] (imputed)	N
1891	chr5	171180432	171180432	rs11463901	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	5q35.1	AC011410.1	rs11463901-CA	0.3046	1E-6		0.0363	[0.022-0.051] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1891	chr5	171181236	171181237	rs153750	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	5q35.1	FBXW11	rs153750-G	0.62	3E-10		1.16	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
1891	chr5	171189570	171189571	rs33852	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	5q35.1	intergenic	rs33852-A	0.6771	1E-24		0.0207	[0.017-0.025] unit decrease	Affymetrix [18391927] (imputed)	N
1891	chr5	171190825	171190826	rs17073930	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 2)	4,680 European ancestry individuals	3,566 European ancestry individuals	5q35.1		rs17073930-G	0.213796791	4E-8				Illumina [7417619] (imputed)	N
1891	chr5	171193789	171193790	rs33857	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	5q35.1	AC011410.1	rs33857-C	NR	2E-9		0.022406	[0.015-0.03] unit increase	Affymetrix [323123] (imputed)	N
1891	chr5	171197861	171197862	rs153754	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	5q35.1	AC011410.1	rs153754-A	NR	5E-11		0.021129	[0.015-0.027] unit increase	Affymetrix [323123] (imputed)	N
1891	chr5	171200658	171200659	rs27947	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	5q35.1		rs27947-G	0.434147	3E-28		0.0223849	[0.018-0.026] unit decrease	Illumina [13479295] (imputed)	N
1891	chr5	171200658	171200659	rs27947	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	5q35.1	FGF18, SMIM23	rs27947-?	NR	4E-31		0.03338343	[0.028-0.039] unit decrease	Illumina [27896057] (imputed)	N
1891	chr5	171202016	171202017	rs26401	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	5q35.1	NR	rs26401-?	NR	3E-6		4.707	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1891	chr5	171203437	171203438	rs12153391	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	5q35.1	FBXW11	rs12153391-A	0.4	2E-6		0.021	[0.0092-0.0328] unit decrease	Affymetrix, Illumina [2704730] (imputed)	N
1891	chr5	171203437	171203438	rs12153391	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	5q35.1	FBXW11	rs12153391-A	0.25	4E-12		0.03	[NR] unit decrease	Affymetrix, Illumina [2834208] (imputed)	N
1891	chr5	171220502	171220503	rs1990657	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	5q35.1	NR	rs1990657-?	NR	6E-13				Affymetrix [~ 8270000] (imputed)	N
1891	chr5	171266177	171266192	rs35223369	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Unilateral cleft lip	184 Asian ancestry cases, 151 European ancestry cases, 167 Hispanic cases, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	5q35.1	NR	rs35223369-?	NR	2E-6		1.71	[1.58-1.86]	Illumina [539000] (imputed)	N
1891	chr5	171275948	171275948	rs111748972	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	5q35.1	FBXW11	rs111748972-A	NR	3E-10		0.0183255	[0.013-0.024] unit decrease	Affymetrix [321114] (imputed)	N
1891	chr5	171275948	171275948	rs111748972	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	5q35.1	FBXW11	rs111748972-A	NR	1E-11		0.0194946	[0.014-0.025] unit decrease	Affymetrix [321016] (imputed)	N
1891	chr5	171276392	171276393	rs702101	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	5q35.1	FBXW11	rs702101-G	NR	2E-16		0.0258473	[0.02-0.032] unit decrease	Affymetrix [321114] (imputed)	N
1891	chr5	171276392	171276393	rs702101	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	5q35.1	FBXW11	rs702101-G	NR	2E-12		0.0220163	[0.016-0.028] unit decrease	Affymetrix [323123] (imputed)	N
1891	chr5	171276392	171276393	rs702101	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5q35.1		rs702101-?	NR	3E-113				NR [~ 8900000] (imputed)	N
1891	chr5	171276392	171276393	rs702101	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	5q35.1	FBXW11	rs702101-A	0.6042	6E-9		0.0418	[0.028-0.056] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1891	chr5	171281874	171281875	rs4868125	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	5q35.1	NR	rs4868125-?	NR	5E-32				Affymetrix [~ 8270000] (imputed)	N
1891	chr5	171281874	171281875	rs4868125	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in non-smokers	77,113 European ancestry women, 47,319 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	5q35.1	FBXW11	rs4868125-C	0.3979	1E-6		0.0199	[0.012-0.028] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1891	chr5	171281874	171281875	rs4868125	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	5q35.1	FBXW11	rs4868125-C	0.3979	6E-7				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1891	chr5	171281874	171281875	rs4868125	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	5q35.1	FBXW11	rs4868125-C	0.3979	6E-6	(women)	0.0212	[0.012-0.03] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1891	chr5	171281874	171281875	rs4868125	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	5q35.1	FBXW11	rs4868125-C	0.3979	1E-6		0.0183	[0.011-0.026] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1891	chr5	171281874	171281875	rs4868125	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	5q35.1	FBXW11	rs4868125-C	0.3987	4E-6	(EA,women)	0.0218	[0.013-0.031] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1891	chr5	171281874	171281875	rs4868125	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	5q35.1	FBXW11	rs4868125-C	0.3987	3E-9	(EA)	0.0215	[0.014-0.029] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1891	chr5	171283468	171283469	rs4868126	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	5q35.1	FBXW11	rs4868126-G	0.6084	8E-9	(EA)	0.023	[0.015-0.031] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1891	chr5	171283468	171283469	rs4868126	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	5q35.1	FBXW11	rs4868126-G	0.6084	4E-7	(EA, women)	0.0261	[0.016-0.036] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1891	chr5	171283468	171283469	rs4868126	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	5q35.1	FBXW11	rs4868126-G	0.5966	5E-9		0.0221	[0.015-0.03] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1891	chr5	171283468	171283469	rs4868126	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	5q35.1	FBXW11	rs4868126-G	0.6084	6E-9	(EA)	0.0262	[0.017-0.035] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1891	chr5	171283468	171283469	rs4868126	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	5q35.1	FBXW11	rs4868126-G	0.6071	8E-8	(EA,women)	0.031	[0.02-0.042] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1891	chr5	171283468	171283469	rs4868126	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	5q35.1	FBXW11	rs4868126-G	0.5966	2E-10		0.0273	[0.019-0.036] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1891	chr5	171283468	171283469	rs4868126	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	5q35.1	FBXW11	rs4868126-?	0.6084	6E-9	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1891	chr5	171283468	171283469	rs4868126	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	5q35.1	FBXW11	rs4868126-?	0.6084	3E-7	(EA, women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1891	chr5	171283468	171283469	rs4868126	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	5q35.1	FBXW11	rs4868126-?	0.5966	7E-10				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1891	chr5	171283468	171283469	rs4868126	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	5q35.1	FBXW11	rs4868126-T	0.395	3E-29		0.036	[0.030-0.042] unit decrease	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
1891	chr5	171284642	171284642	rs11424823	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	5q35.1		rs11424823-GC	NR	4E-80		0.0258	[0.023-0.029] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1891	chr5	171284642	171284642	rs11424823	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	5q35.1	FBXW11	rs11424823-G	0.3799	1E-24		0.0206	[0.017-0.025] unit decrease	Affymetrix [18391927] (imputed)	N
1891	chr5	171284642	171284642	rs11424823	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	5q35.1	SMIM23, FBXW11	rs11424823-?	NR	3E-25		0.031266358	[0.025-0.037] unit increase	Illumina [27896057] (imputed)	N
1891	chr5	171285239	171285240	rs13180399	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	5q35.1	NR	rs13180399-?	NR	3E-11				Affymetrix [~ 8270000] (imputed)	N
1891	chr5	171285631	171285632	rs1368380	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	5q35.1	FBXW11	rs1368380-T	NR	1E-9		0.0172763	[0.012-0.023] unit increase	Affymetrix [321114] (imputed)	N
1891	chr5	171285631	171285632	rs1368380	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	5q35.1	FBXW11	rs1368380-T	NR	9E-9		0.0178458	[0.012-0.024] unit increase	Affymetrix [321114] (imputed)	N
1891	chr5	171285631	171285632	rs1368380	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	5q35.1	FBXW11	rs1368380-T	NR	3E-8		0.0157248	[0.01-0.021] unit increase	Affymetrix [321016] (imputed)	N
1891	chr5	171285631	171285632	rs1368380	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	5q35.1	FBXW11	rs1368380-T	NR	5E-11		0.020302	[0.014-0.026] unit increase	Affymetrix [323123] (imputed)	N
1892	chr5	171361447	171361448	rs12518003	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	5q35.1	FBXW11	rs12518003-A	0.3508	8E-6		0.0319	[0.018-0.046] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1892	chr5	171423832	171423833	rs185281125	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5q35.1		rs185281125-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1893	chr5	171522274	171522275	rs10053012	30498476	Liu H	2018-11-15	Front Endocrinol (Lausanne)	Heritability and Genome-Wide Association Study of Plasma Cholesterol in Chinese Adult Twins.	High density lipoprotein cholesterol levels	139 Chinese ancestry dizygotic twin pairs	NA	5q35.1	STK10	rs10053012-?		6E-6				Illumina [7405822] (imputed)	N
1893	chr5	171538743	171538744	rs60188314	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	5q35.1	NR	rs60188314-?	NR	1E-6		0.4404	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1893	chr5	171538743	171538744	rs60188314	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	5q35.1	NR	rs60188314-?	NR	1E-8		0.4624	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1893	chr5	171559530	171559531	rs17570583	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine - clinic-based	5,175 European ancestry clinic-based cases, 13,972 European ancestry clinic-based controls	NA	5q35.1	intergenic	rs17570583-A	0.08	9E-6		1.23	[1.12-1.35]	Affymetrix, Illumina [~ 2300000] (imputed)	N
1893	chr5	171571510	171571511	rs6899139	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	5q35.1	NR	rs6899139-T	0.519562	3E-24		0.019186	[0.015-0.023] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
1893	chr5	171572576	171572577	rs3776754	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	5q35.1	STK10	rs3776754-T	0.480538	2E-21		0.021022722	[0.017-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1893	chr5	171572576	171572577	rs3776754	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q35.1	NR	rs3776754-G	0.522695	4E-21				Affymetrix, Illumina [22063850] (imputed)	N
1893	chr5	171572576	171572577	rs3776754	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	5q35.1		rs3776754-?	NR	5E-26				NR [~ 8900000] (imputed)	N
1894	chr5	171577688	171577689	rs4868145	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	5q35.1	STK10	rs4868145-T	0.588286	2E-11		0.0126524	[0.009-0.0163] unit decrease	NR [13737936] (imputed)	N
1894	chr5	171577688	171577689	rs4868145	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	5q35.1		rs4868145-?	NR	5E-9		0.0122899	[0.0081-0.0165] unit decrease	Affymetrix [20259828] (imputed)	N
1894	chr5	171578293	171578294	rs73329622	30294719	Zeng Y	2018-08-24	JAMA Netw Open	Sex Differences in Genetic Associations With Longevity.	Longevity	564 Han Chinese ancestry male centenarian cases, 1,614 Han Chinese ancestry female centenarian cases, 773 Han Chinese ancestry male middle-aged controls, 1,526 Han Chinese ancestry female middle-aged controls	NA	5q35.1	STK10	rs73329622-?	0.82	9E-6	(male)	1.5625	[1.28-1.89]	Illumina [5595657] (imputed)	N
1894	chr5	171578883	171578884	rs9313579	33338681	Chu H	2020-12-15	Environ Int	A prospective study of the associations among fine particulate matter, genetic variants, and the risk of colorectal cancer.	Colorectal cancer x fine particulate matter exposure levels interaction	590 European ancestry cases, 55 Black cases, 9 Hispanic cases, 28 Asian ancestry cases, 5 cases, 12,715 European ancestry controls, 1,153 Black controls, 37 Hispanic controls, 94 Asian ancestry controls, 15 controls	NA	5q35.1	STK10	rs9313579-T	0.059	2E-9		0.8	[0.74-0.86]	Illumina [4085111] (imputed)	N
1894	chr5	171586241	171586242	rs6555999	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5q35.1		rs6555999-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1894	chr5	171594062	171594063	rs4868149	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	5q35.1		rs4868149-?	NR	9E-9				NR [~ 8900000] (imputed)	N
1894	chr5	171598433	171598434	rs77462941	32733355	Ryu HS	2020-07-07	Front Neurol	Genomic Analysis Identifies New Loci Associated With Motor Complications in Parkinson's Disease.	Motor fluctuations in levodopa treated Parkinson's disease	219 Korean ancestry cases, 522 Korean ancestry controls	NA	5q35.1	STK10	rs77462941-C	0.23	9E-6		0.5	[0.36-0.68]	Affymetrix [583535] (imputed)	N
1894	chr5	171637809	171637810	rs17701097	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Cancer	56,634 White British ancestry cases, 218,196 White British ancestry controls	NA	5q35.1		rs17701097-?	NR	5E-6		1.07497	[1.04-1.11]	NR [688737]	N
1896	chr5	171851933	171851934	rs6859752	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	5q35.1	NR	rs6859752-T	0.311105	4E-23		0.0328466	[0.026-0.039] unit decrease	NR [19129689] (imputed)	N
1896	chr5	171851933	171851934	rs6859752	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	5q35.1	NR	rs6859752-T	0.3289	4E-10		0.012	[0.0083-0.0157] unit increase	NR [~ 27400000] (imputed)	N
1896	chr5	171851933	171851934	rs6859752	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	5q35.1	NR	rs6859752-T	0.3292	2E-8		0.0107	[0.007-0.0144] unit increase	NR [~ 27400000] (imputed)	N
1896	chr5	171853157	171853158	rs6866204	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	5q35.1		rs6866204-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1896	chr5	171853157	171853158	rs6866204	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	5q35.1		rs6866204-?	NR	2E-13				NR [~ 8900000] (imputed)	N
1896	chr5	171857418	171857419	rs6893600	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	5q35.1	SH3PXD2B	rs6893600-A	NR	3E-9		0.0183841	[0.012-0.024] unit increase	Affymetrix [319769] (imputed)	N
1896	chr5	171857418	171857419	rs6893600	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	5q35.1	SH3PXD2B	rs6893600-A	NR	7E-9		0.0179154	[0.012-0.024] unit increase	Affymetrix [319769] (imputed)	N
1896	chr5	171865079	171865080	rs10067250	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	5q35.1		rs10067250-C	NR	3E-10		0.0123	[0.0084-0.0162] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
1896	chr5	171875243	171875244	rs570053489	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	5q35.1	SH3PXD2B	rs570053489-A	0.0018	6E-6		0.5386	[0.31-0.77] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1896	chr5	171898063	171898064	rs919765	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	5q35.1	SH3PXD2B	rs919765-G	0.638412337126496	3E-6	(G_Barnesiella_HB)	0.326264	[0.19-0.46] unit decrease	Illumina [7711310] (imputed)	N
1896	chr5	171918773	171918774	rs891998	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	5q35.1	NR	rs891998-?	NR	6E-6		0.0374	[0.021-0.054] unit increase	Illumina [at least 560000] (imputed)	N
1896	chr5	171927245	171927246	rs11745941	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical thickness	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	5q35.1	NR	rs11745941-T	0.4624	1E-6	(Caudal Middle Frontal)	0.003437906	[0.002-0.0048] unit increase	Affymetrix, Illumina [NR]	N
1896	chr5	171931938	171931939	rs11748651	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	5q35.1		rs11748651-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1896	chr5	171934491	171934492	rs11738223	26414677	Day FR	2015-11-01	Nat Genet	Large-scale genomic analyses link reproductive aging to hypothalamic signaling, breast cancer susceptibility and BRCA1-mediated DNA repair.	Menopause (age at onset)	up to 69,626 European ancestry women	NA	5q35.1	SH3PXD2B	rs11738223-A	0.68	2E-8		0.12	[0.081-0.159] years decrease	Affymetrix, Illumina [~ 2600000] (imputed)	N
1896	chr5	171948341	171948342	rs11745586	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5q35.1	SH3PXD2B	rs11745586-A	0.701632	9E-9	(52 ms)	0.035012	[0.023-0.047] unit decrease	Affymetrix [10000000] (imputed)	N
1896	chr5	171948341	171948342	rs11745586	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5q35.1	SH3PXD2B	rs11745586-A	0.701632	2E-9	(76 ms)	0.0378665	[0.026-0.05] unit decrease	Affymetrix [10000000] (imputed)	N
1896	chr5	171948341	171948342	rs11745586	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5q35.1	SH3PXD2B	rs11745586-A	0.701632	2E-10	(74 ms)	0.0399603	[0.028-0.052] unit decrease	Affymetrix [10000000] (imputed)	N
1896	chr5	171950230	171950231	rs62385501	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	5q35.1		rs62385501-A	0.308061	3E-10		0.014994032	[0.01-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1896	chr5	171950230	171950231	rs62385501	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	5q35.1	NR	rs62385501-A	0.308103	2E-11		0.014427	[0.01-0.019] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
1896	chr5	171960411	171960412	rs72848121	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota relative abundance (bacterial taxa)	up to 858 Metropolitan French ancestry individuals	NA	5q35.1	NR	rs72848121-?	NR	3E-8	(Actinobacteria)	0.315582	[0.21-0.43] unit increase	Illumina [5293637] (imputed)	N
1897	chr5	171969347	171969348	rs1347155	25133637	Scannell Bryan M	2014-08-18	PLoS One	Genome-wide association studies and heritability estimates of body mass index related phenotypes in Bangladeshi adults.	Body mass index (change over time)	2,643 Bangladeshi ancestry females, 2,340 Bangladeshi ancestry males	NA	5q35.1	SH3PXD2B, NEURL1B	rs1347155-T	0.042	9E-8	(females)	0.559	[0.36-0.76] unit increase	Illumina [1208102] (imputed)	N
1897	chr5	171969347	171969348	rs1347155	25133637	Scannell Bryan M	2014-08-18	PLoS One	Genome-wide association studies and heritability estimates of body mass index related phenotypes in Bangladeshi adults.	Body mass index (change over time)	2,643 Bangladeshi ancestry females, 2,340 Bangladeshi ancestry males	NA	5q35.1	NEURL1B, SH3PXD2B	rs1347155-T	0.042	5E-7		0.341	[0.21-0.47] unit increase	Illumina [1208102] (imputed)	N
1897	chr5	171984063	171984064	rs4868180	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	5q35.1		rs4868180-?	NR	7E-10				NR [~ 8900000] (imputed)	N
1897	chr5	171988067	171988068	rs4868181	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	5q35.1		rs4868181-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1897	chr5	171998937	171998938	rs56879175	27694959	Bonder MJ	2016-10-03	Nat Genet	The effect of host genetics on the gut microbiome.	Gut microbiota (functional units)	984 European ancestry individuals	530 European ancestry individuals	5q35.1	AC027309.1	rs56879175-C	NR	5E-8	(GO:0003697|MF|06|single-stranded DNA binding)	5.4600735	NR Z-score decrease	Illumina [8100000] (imputed)	N
1897	chr5	172004424	172004425	rs72841878	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	5q35.1		rs72841878-A	NR	4E-9		0.0218	[0.015-0.029] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
1897	chr5	172006370	172006371	rs72841879	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	5q35.1		rs72841879-T	0.11954	2E-11		0.022889398	[0.016-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
1897	chr5	172006370	172006371	rs72841879	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	5q35.1	NR	rs72841879-T	0.119842	3E-11		0.019428	[0.014-0.025] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1897	chr5	172028195	172028196	rs138767389	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	5q35.1		rs138767389-C	0.139053	2E-11		0.021775518	[0.015-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
1897	chr5	172029686	172029687	rs11954810	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5q35.1	DUSP1	rs11954810-?	NR	7E-6	(LPC 18:0)	0.73021495	[0.41-1.05] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1897	chr5	172052063	172052064	rs6897080	34748635	Miranda JP	2021-11-08	J Clin Endocrinol Metab	Genome-Wide Association Study And Polygenic Risk Scores Of Serum Dheas Levels In A Chilean Children Cohort.	DHEAS levels	398 Hispanic or Latin American male individuals	NA	5q35.1	LOC107986478	rs6897080-A	0.461	9E-6		0.08	unit decrease	Illumina [5510858] (imputed)	N
1897	chr5	172095866	172095867	rs10065159	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	5q35.1	Intergenic	rs10065159-T	0.3122	1E-8	(MTAG)	0.0101	[0.0066-0.0136] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1898	chr5	172102334	172102335	rs11745123	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	5q35.1	Intergenic	rs11745123-T	0.497	1E-10	(MTAG)	0.0116	[0.0081-0.0151] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1898	chr5	172102340	172102341	rs11741671	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	5q35.1	Intergenic	rs11741671-C	0.4973	9E-11		0.0126	[0.0089-0.0163] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1898	chr5	172111231	172111232	rs76010719	33223526	Hong S	2020-11-22	Transl Psychiatry	Genome-wide association study of Alzheimer's disease CSF biomarkers in the EMIF-AD Multimodal Biomarker Discovery dataset.	Central cerebrospinal fluid amyloid beta 42 to 40 ratio	677 European ancestry individuals	NA	5q35.1		rs76010719-C	0.8597	4E-6		0.061	[0.036-0.086] unit decrease	Illumina [7778465] (imputed)	N
1898	chr5	172111953	172111954	rs73803489	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q35.1	NR	rs73803489-G	0.122	2E-8	(UGT2B15)	0.1301	NR unit increase	Illumina [1671387] (imputed)	N
1898	chr5	172160735	172160736	rs322396	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	5q35.1	NR	rs322396-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
1898	chr5	172160735	172160736	rs322396	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	5q35.1		rs322396-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1898	chr5	172171136	172171137	rs75767302	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	5q35.1	intergenic	rs75767302-A	0.0441	9E-13		0.033	[0.024-0.042] unit increase	Affymetrix [18391927] (imputed)	N
1898	chr5	172175326	172175327	rs17658057	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	5q35.1	NR	rs17658057-A	NR	8E-11		0.0381	[0.027-0.05] unit increase	Affymetrix [9000000] (imputed)	N
1898	chr5	172176885	172176886	rs2161374	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	5q35.1		rs2161374-T	NR	4E-13		0.0156	[0.011-0.02] unit decrease	Affymetrix, Illumina [20529698] (imputed)	N
1898	chr5	172176885	172176886	rs2161374	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	5q35.1	NR	rs2161374-C	0.513785	7E-17		0.0170498	[0.013-0.021] unit increase	NR [NR]	N
1898	chr5	172191051	172191052	rs17658229	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	up to 92,771 European ancestry males, up to 113,387 European ancestry females	NA	5q35.1	DUSP1	rs17658229-C	0.05	6E-9		0.056	[0.036-0.076] unit increase	Affymetrix, Illumina, Perlegen [2437193] (imputed)	N
1898	chr5	172191051	172191052	rs17658229	25241763	Springelkamp H	2014-09-22	Nat Commun	Meta-analysis of genome-wide association studies identifies novel loci that influence cupping and the glaucomatous process.	Vertical cup-disc ratio	18,963 European ancestry individuals, 2,131 Erasmus Rucphen individuals	2,453 Chinese ancestry individuals, 2,026 Indian ancestry individuals, 2,305 Malay ancestry individuals	5q35.1	DUSP1	rs17658229-C	NR	8E-9		0.02	[0.012-0.028] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1898	chr5	172192349	172192350	rs114503346	34785669	Grosche S	2021-11-16	Nat Commun	Rare variant analysis in eczema identifies exonic variants in DUSP1, NOTCH4 and SLC9A4.	Eczema	20,016 European ancestry cases, 380,433 European ancestry controls	NA	5q35.1		rs114503346-T	0.0442	3E-10		0.84		Affymetrix, Illumina [9397031] (imputed)	N
1898	chr5	172192349	172192350	rs114503346	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (multi-trait analysis)	90,939 European ancestry individuals	NA	5q35.1	LOC101928093, DUSP1	rs114503346-C	0.95	4E-14		0.02	NR unit increase	Affymetrix, Illumina [8002429] (imputed)	N
1898	chr5	172192349	172192350	rs114503346	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	NA	5q35.1	DUSP1	rs114503346-C	0.9539	3E-10		0.2678	[0.18-0.35] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1898	chr5	172192349	172192350	rs114503346	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Vertical cup-disc ratio	21,768 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	8,168 Asian ancestry individuals	5q35.1	DUSP1	rs114503346-T	NR	5E-9	(EA)	0.022	[0.014-0.03] unit decrease	Affymetrix, Illumina [~ 8000000] (imputed)	N
1898	chr5	172192349	172192350	rs114503346	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Vertical cup-disc ratio	21,768 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	8,168 Asian ancestry individuals	5q35.1	DUSP1	rs114503346-T	NR	1E-8		0.021	[0.013-0.029] unit decrease	Affymetrix, Illumina [~ 8000000] (imputed)	N
1898	chr5	172192867	172192868	rs322353	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	5q35.1		rs322353-?	NR	7E-11				NR [~ 8900000] (imputed)	N
1898	chr5	172194872	172194873	rs322351	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	5q35.1		rs322351-T	NR	4E-19		0.0184	[0.014-0.023] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
1898	chr5	172194872	172194873	rs322351	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	5q35.1		rs322351-T	NR	1E-22		0.0202	[0.016-0.024] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
1898	chr5	172194872	172194873	rs322351	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	5q35.1		rs322351-C	0.532	5E-19		0.1	[-0.12--0.08] % decrease	Affymetrix [NR] (imputed)	N
1898	chr5	172194872	172194873	rs322351	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q35.1	NR	rs322351-C	0.538775	3E-14				Affymetrix, Illumina [22063850] (imputed)	N
1898	chr5	172194872	172194873	rs322351	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	5q35.1	NR	rs322351-C	0.531276	5E-16		0.015336	[0.012-0.019] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
1898	chr5	172194872	172194873	rs322351	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q35.1	NR	rs322351-T	0.428242	5E-28				Affymetrix, Illumina [24246363] (imputed)	N
1898	chr5	172194872	172194873	rs322351	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	5q35.1	NR	rs322351-T	0.468625	4E-27		0.019675	[0.016-0.023] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
1898	chr5	172194872	172194873	rs322351	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q35.1	NR	rs322351-T	0.424833	1E-32				Affymetrix, Illumina [20825802] (imputed)	N
1898	chr5	172194872	172194873	rs322351	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	5q35.1	NR	rs322351-T	0.467941	3E-31		0.022548	[0.019-0.026] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
1898	chr5	172194872	172194873	rs322351	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	5q35.1		rs322351-?	NR	5E-27				NR [~ 8900000] (imputed)	N
1898	chr5	172196751	172196752	rs34471628	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	5q35.1		rs34471628-A	0.9608	3E-10		0.21914244	[0.15-0.29] mmHg increase	Affymetrix, Illumina [242866] (imputed)	N
1898	chr5	172196751	172196752	rs34471628	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (adjusted for vertical disc diameter)	67,040 British ancestry individuals	NA	5q35.1	DUSP1	rs34471628-A	0.96	3E-8		0.01	[0.0055-0.0145] unit increase	Affymetrix [at least 8002429] (imputed)	N
1898	chr5	172196751	172196752	rs34471628	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	5q35.1	DUSP1	rs34471628-A	0.962457	4E-13		0.058548	[0.043-0.074] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
1898	chr5	172196751	172196752	rs34471628	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	148,164 European ancestry individuals	NA	5q35.1	DUSP1	rs34471628-A	0.96	6E-12	(BMI-adjusted)	0.075	[0.053-0.097] unit decrease	Affymetrix, Illumina, Perlegen [10019203] (imputed)	N
1898	chr5	172197038	172197039	rs35084382	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Optic cup area	20,353 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	7,333 Asian ancestry individuals	5q35.1	DUSP1	rs35084382-C	NR	2E-8	(EA)	0.034	[0.022-0.046] unit decrease	Affymetrix, Illumina [~ 8000000] (imputed)	N
1898	chr5	172197038	172197039	rs35084382	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Optic cup area	20,353 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	7,333 Asian ancestry individuals	5q35.1	DUSP1	rs35084382-C	NR	2E-8		0.033	[0.021-0.045] unit decrease	Affymetrix, Illumina [~ 8000000] (imputed)	N
1898	chr5	172197789	172197790	rs34013988	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5q35.1		rs34013988-?	NR	2E-13				NR [~ 8900000] (imputed)	N
1898	chr5	172198287	172198288	rs28372789	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	5q35.1	RP11-779O18.3	rs28372789-G	0.489679	3E-12		0.015784664	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1898	chr5	172198287	172198288	rs28372789	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	5q35.1	RP11-779O18.3	rs28372789-G	0.489741	3E-9		0.013391713	[0.009-0.0178] unit decrease	Affymetrix [93095623] (imputed)	N
1898	chr5	172198287	172198288	rs28372789	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	5q35.1	RP11-779O18.3	rs28372789-G	0.489756	8E-21		0.0208573	[0.017-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1898	chr5	172198287	172198288	rs28372789	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	5q35.1	RP11-779O18.3	rs28372789-G	0.489762	5E-28		0.024860874	[0.02-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1898	chr5	172207269	172207270	rs145646262	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Vertical cup-disc ratio	25,180 European ancestry individuals	NA	5q35.1	DUSP1	rs145646262-A	0.043	7E-9		0.019	[0.013-0.025] unit decrease	Affymetrix, Illumina [11901698] (imputed)	N
1898	chr5	172227213	172227214	rs34209199	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	5q35.1	NR	rs34209199-?	NR	3E-6		0.129334	[0.075-0.183] unit increase	NR [13958389] (imputed)	N
1899	chr5	172271006	172271007	rs792975	23648065	Low SK	2013-05-04	Cancer Sci	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (paclitaxel)	218 Japanese ancestry cases, 364 Japanese controls	NA	5q35.1	ERGIC1	rs792975-T	0.519	8E-6	(Allelic model)	1.746	[1.366-2.232]	Illumina [733202]	N
1899	chr5	172292305	172292306	rs6890783	24024966	Teumer A	2013-08-14	J Clin Periodontol	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (CDC/AAP)	up to 3,915 European ancestry individuals	NA	5q35.1	ERGIC1	rs6890783-A	0.01	5E-6	(Age 20-60 years)	6.45	[2.89-14.38]	Affymetrix, Illumina [up to 17585496] (imputed)	N
1899	chr5	172302687	172302688	rs116417701	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5q35.1		rs116417701-?	NR	3E-11				NR [~ 8900000] (imputed)	N
1899	chr5	172306539	172306540	rs9637855	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	5q35.1		rs9637855-?	NR	7E-8				NR [~ 8900000] (imputed)	N
1899	chr5	172324977	172324978	rs564349	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	5q35.1	ERGIC1	rs564349-?		2E-6				Illumina [9725440] (imputed)	N
1899	chr5	172324977	172324978	rs564349	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	5q35.1	C5orf4, DUSP1	rs564349-G	0.3183	2E-6	(EA)	1.0646768	[1.04-1.09]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1899	chr5	172324977	172324978	rs564349	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	5q35.1	C5orf4, DUSP1	rs564349-G	0.3183	2E-7	(EA)	1.056796	[1.04-1.08]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1899	chr5	172353871	172353872	rs11748190	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs non-severe)	86 Finnish ancestry male severe erosion cases, 50 Finnish ancestry female severe erosion cases, 817 Finnish ancestry male non-severe erosion controls, 991 Finnish ancestry female non-severe erosion controls	NA	5q35.1	NR	rs11748190-?	NR	9E-6				Illumina [NR] (imputed)	N
1899	chr5	172354730	172354731	rs517339	34873335	van Rheenen W	2021-12-06	Nat Genet	Common and rare variant association analyses in amyotrophic lateral sclerosis identify 15 risk loci with distinct genetic architectures and neuron-specific biology.	Amyotrophic lateral sclerosis	27,205 European ancestry cases, 110,881 European ancestry controls, 2,407 East Asian ancestry cases, 11,775 East Asian ancestry controls	NA			rs517339-C	NR	6E-9		0.06	[0.038-0.082] unit decrease	Illumina [10461755] (imputed)	N
1899	chr5	172354730	172354731	rs517339	34873335	van Rheenen W	2021-12-06	Nat Genet	Common and rare variant association analyses in amyotrophic lateral sclerosis identify 15 risk loci with distinct genetic architectures and neuron-specific biology.	Amyotrophic lateral sclerosis	27,205 European ancestry cases, 110,881 European ancestry controls	NA	5q35.1		rs517339-C	0.397	9E-9		0.065	[0.043-0.087] unit decrease	Illumina [10461755] (imputed)	N
1900	chr5	172472051	172472052	rs12513649	27455349	Minster RL	2016-07-25	Nat Genet	A thrifty variant in CREBRF strongly influences body mass index in Samoans.	Body mass index	3,072 Samoan (founder/genetic isolate) individuals	2,102 Samoan (founder/genetic isolate) individuals	5q35.1	CREBRF, ATP6V0E1	rs12513649-G	0.276	5E-14		0.041	[0.031-0.051] unit increase	Affymetrix [659492]	N
1900	chr5	172480335	172480336	rs251253	20062060	Pfeufer A	2010-01-10	Nat Genet	Genome-wide association study of PR interval.	PR interval	28,517 European ancestry individuals	NA	5q35.1	NKX2-5, C5orf41	rs251253-C	0.40	9E-13		1.49	[1.08-1.90] ms decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1900	chr5	172484040	172484041	rs3095844	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5q35.1		rs3095844-?	NR	5E-18				NR [~ 8900000] (imputed)	N
1900	chr5	172485040	172485040	rs562447555	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	5q35.1	CREBRF	rs562447555-CT	0.0982	7E-10		0.0195	[0.013-0.026] unit increase	Affymetrix [18391927] (imputed)	N
1901	chr5	172499586	172499587	rs251242	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	5q35.1		rs251242-A	NR	3E-9		0.014	[0.0095-0.0185] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1901	chr5	172574175	172574176	rs29797	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	5q35.1	NR	rs29797-G	0.374751	2E-8		0.04115175	[0.027-0.055] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1901	chr5	172574175	172574176	rs29797	30679814	van Setten J	2019-01-24	Eur J Hum Genet	Genome-wide association meta-analysis of 30,000 samples identifies seven novel loci for quantitative ECG traits.	PR interval	2,370 Erasmus Rucphen Family (founder/genetic isolate) individuals, 29,325 European ancestry individuals	391 Carlantino (founder/genetic isolate) individuals, 981 Friuli Venezia Giulia (founder/genetic isolate) individuals, 31,033 European ancestry individuals, 2,070 African American individuals	5q35.1	BNIP1	rs29797-C	0.573	5E-12		1.283	[0.92-1.65] unit increase	Affymetrix, Illumina [at least 19000000] (imputed)	N
1901	chr5	172577402	172577403	rs29795	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	5q35.1	NKX2-5, ATP6V0E1, C5orf41, BNIP1, CREBRF	rs29795-A	0.5699	5E-55		1.0051	[0.88-1.13] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1901	chr5	172580865	172580866	rs255292	30046033	van Setten J	2018-07-25	Nat Commun	PR interval genome-wide association meta-analysis identifies 50 loci associated with atrial and atrioventricular electrical activity.	PR interval	92,340 European ancestry individuals	NA	5q35.1	BNIP1, NKX2-5	rs255292-C	0.42	6E-21		1.1	[0.86-1.34] ms decrease	Affymetrix, Illumina [2712613] (imputed)	N
1901	chr5	172584380	172584381	rs255296	32602732	Baldassari AR	2020-06-30	Circ Genom Precis Med	Multi-ethnic Genome-wide Association Study of Decomposed Cardioelectric Phenotypes Illustrates Strategies to Identify and Characterize Evidence of Shared Genetic Effects for Complex Traits.	Electrocardiographic traits (multivariate)	17,873 European ancestry individuals, 12,749 Hispanic individuals, 5,408 African American individuals, 315 Chinese-American individuals	NA	5q35.1	Y_RNA	rs255296-?	NR	6E-8				Affymetrix, Illumina [22000000] (imputed)	N
1901	chr5	172586271	172586272	rs255299	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	5q35.1	BNIP1	rs255299-T	0.5572	1E-8		0.1115	[0.073-0.15] mmHg decrease	Affymetrix [NR] (imputed)	N
1901	chr5	172588026	172588027	rs255303	29891935	Choquet H	2018-06-11	Nat Commun	A multiethnic genome-wide association study of primary open-angle glaucoma identifies novel risk loci.	Glaucoma (primary open-angle)	10,523 European ancestry cases, 203,579 European ancestry controls, 411 Hispanic cases, 4,778 Hispanic controls, 463 East Asian ancestry cases, 4,907 East Asian ancestry controls, 298 African American cases, 1,549 African American controls, 204 South Asian ancestry cases, 4,916 South Asian ancestry controls, 272 African British cases, 4,831 African British controls, 144 mixed ancestry cases, 3,427 mixed ancestry controls	NA	5q35.1	BNIP1	rs255303-G	NR	4E-8		1.08	1.05-1.11	Affymetrix [at least 665500] (imputed)	N
1901	chr5	172592709	172592710	rs3097165	32121467	Adewuyi EO	2020-02-29	Genes (Basel)	Shared Molecular Genetic Mechanisms Underlie Endometriosis and Migraine Comorbidity.	Endometriosis or migraine	17,054 European and Japanese ancestry endometriosis cases, 29,208 European ancestry migraine cases, 191,858 European and Japanese ancestry controls, 172,931 European ancestry controls	NA	5q35.1	NR	rs3097165-G	NR	4E-6	(random effect)	1.18	NR	NR [6904914] (imputed)	N
1901	chr5	172595307	172595308	rs29784	23989729	Feenstra B	2013-08-21	JAMA	Plasma lipids, genetic variants near APOA1, and the risk of infantile hypertrophic pyloric stenosis.	Infantile hypertrophic pyloric stenosis	1,001 European ancestry cases, 2,371 European ancestry controls	925 European ancestry cases, 1,621 European ancestry controls, 738 cases, 697 controls	5q35.1	intergenic	rs29784-T	0.4504	8E-18		1.36	[1.27-1.46]	Illumina [9737928] (imputed)	N
1901	chr5	172595307	172595308	rs29784	22306654	Feenstra B	2012-02-05	Nat Genet	Common variants near MBNL1 and NKX2-5 are associated with infantile hypertrophic pyloric stenosis.	Infantile hypertrophic pyloric stenosis	1,001 European ancestry cases, 2,401 European ancestry controls	796 European ancestry cases, 876 European ancestry controls	5q35.1	BNIP1, NKX2-5	rs29784-A	0.45	1E-15		1.42	[1.30-1.55]	Illumina [523420]	N
1902	chr5	172640589	172640590	rs6891174	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Ischemic stroke (cardioembolic)	7,193 European ancestry cases, 406,111 European ancestry controls, 847 East Asian ancestry cases, 28,195 East Asian ancestry controls, 422 South Asian ancestry cases, 6,707 South Asian ancestry controls, 414 African American cases, 15,146 African American controls, 31 Asian ancestry cases, 333 Asian ancestry controls, 99 Latin American cases, 692 Latin American controls	NA	5q35.1	NKX2-5	rs6891174-?	NR	6E-9				NR [~ 8000000] (imputed)	N
1902	chr5	172640589	172640590	rs6891174	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Ischemic stroke (cardioembolic)	7,193 European ancestry cases, 406,111 European ancestry controls	NA	5q35.1	NKX2-5	rs6891174-?	NR	3E-7				NR [~ 8000000] (imputed)	N
1902	chr5	172643117	172643118	rs4868243	27798624	Eppinga RN	2016-10-31	Nat Genet	Identification of genomic loci associated with resting heart rate and shared genetic predictors with all-cause mortality.	Resting heart rate	127,919 European ancestry individuals, 2,478 Asian ancestry individuals, 1,734 Black individuals, 684 Mixed ancestry individuals, 1,436 individuals	130,795 European ancestry individuals	5q35.1	NKX2-5	rs4868243-A	0.16	4E-16		0.361	[0.27-0.45] unit decrease	Affymetrix [19941912] (imputed)	N
1902	chr5	172644016	172644017	rs12652726	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5q35.1	NKX2-5	rs12652726-C	0.854899	9E-18	(42 ms)	0.0689535	[0.053-0.085] unit increase	Affymetrix [10000000] (imputed)	N
1902	chr5	172644016	172644017	rs12652726	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5q35.1	NKX2-5	rs12652726-C	0.854899	9E-18	(28 ms)	0.0695641	[0.054-0.085] unit increase	Affymetrix [10000000] (imputed)	N
1902	chr5	172644016	172644017	rs12652726	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5q35.1	NKX2-5	rs12652726-C	0.854899	7E-10	(18 ms)	0.0484186	[0.033-0.064] unit increase	Affymetrix [10000000] (imputed)	N
1902	chr5	172644016	172644017	rs12652726	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5q35.1	NKX2-5	rs12652726-C	0.854899	4E-17	(40 ms)	0.0677189	[0.052-0.083] unit increase	Affymetrix [10000000] (imputed)	N
1902	chr5	172644016	172644017	rs12652726	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5q35.1	NKX2-5	rs12652726-C	0.854899	4E-14	(22 ms)	0.0611627	[0.045-0.077] unit increase	Affymetrix [10000000] (imputed)	N
1902	chr5	172644016	172644017	rs12652726	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5q35.1	NKX2-5	rs12652726-C	0.854899	4E-12	(20 ms)	0.0556345	[0.04-0.071] unit increase	Affymetrix [10000000] (imputed)	N
1902	chr5	172644016	172644017	rs12652726	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5q35.1	NKX2-5	rs12652726-C	0.854899	3E-16	(44 ms)	0.0656651	[0.05-0.081] unit increase	Affymetrix [10000000] (imputed)	N
1902	chr5	172644016	172644017	rs12652726	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5q35.1	NKX2-5	rs12652726-C	0.854899	2E-18	(30 ms)	0.070991	[0.055-0.087] unit increase	Affymetrix [10000000] (imputed)	N
1902	chr5	172644016	172644017	rs12652726	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5q35.1	NKX2-5	rs12652726-C	0.854899	2E-15	(24 ms)	0.0645059	[0.049-0.08] unit increase	Affymetrix [10000000] (imputed)	N
1902	chr5	172644016	172644017	rs12652726	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5q35.1	NKX2-5	rs12652726-C	0.854899	2E-13	(46 ms)	0.0593672	[0.044-0.075] unit increase	Affymetrix [10000000] (imputed)	N
1902	chr5	172644016	172644017	rs12652726	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5q35.1	NKX2-5	rs12652726-C	0.854899	2E-11	(48 ms)	0.0542394	[0.038-0.07] unit increase	Affymetrix [10000000] (imputed)	N
1902	chr5	172644016	172644017	rs12652726	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5q35.1	NKX2-5	rs12652726-C	0.854899	1E-18	(34 ms)	0.0711241	[0.055-0.087] unit increase	Affymetrix [10000000] (imputed)	N
1902	chr5	172644016	172644017	rs12652726	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5q35.1	NKX2-5	rs12652726-C	0.854899	1E-18	(32 ms)	0.071324	[0.056-0.087] unit increase	Affymetrix [10000000] (imputed)	N
1902	chr5	172644016	172644017	rs12652726	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5q35.1	NKX2-5	rs12652726-C	0.854899	1E-17	(36 ms)	0.0690191	[0.053-0.085] unit increase	Affymetrix [10000000] (imputed)	N
1902	chr5	172644016	172644017	rs12652726	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	5q35.1	NKX2-5	rs12652726-C	0.854899	1E-16	(38 ms)	0.0664478	[0.051-0.082] unit increase	Affymetrix [10000000] (imputed)	N
1902	chr5	172645765	172645766	rs6556059	30281099	Fadista J	2018-10-02	Hum Mol Genet	Genome-wide meta-analysis identifies BARX1 and EML4-MTA3 as new loci associated with infantile hypertrophic pyloric stenosis.	Infantile hypertrophic pyloric stenosis	1,395 Danish ancestry cases, 4,438 Danish ancestry controls	1,794 European ancestry cases, 633 Hispanic ancestry cases, 1,875 European ancestry controls, 633 Hispanic ancestry controls	5q35.1	NR	rs6556059-T	0.3511636898140792	1E-31	(EA)	1.48	[1.41-1.54]	Illumina [6576307] (imputed)	N
1902	chr5	172645765	172645766	rs6556059	30281099	Fadista J	2018-10-02	Hum Mol Genet	Genome-wide meta-analysis identifies BARX1 and EML4-MTA3 as new loci associated with infantile hypertrophic pyloric stenosis.	Infantile hypertrophic pyloric stenosis	1,395 Danish ancestry cases, 4,438 Danish ancestry controls	1,794 European ancestry cases, 633 Hispanic ancestry cases, 1,875 European ancestry controls, 633 Hispanic ancestry controls	5q35.1	NR	rs6556059-T	0.3402	2E-10		1.43	[1.18-1.67]	Illumina [6576307] (imputed)	N
1902	chr5	172650486	172650487	rs10440708	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	5q35.1	NR	rs10440708-?	NR	8E-8	(Latino)	1.502	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1902	chr5	172664162	172664163	rs6882776	32386560	Ramirez J	2020-04-29	Am J Hum Genet	Common Genetic Variants Modulate the Electrocardiographic Tpeak-to-Tend Interval.	TPE interval (resting)	71,338 European ancestry individuals	NA	5q35.1	NKX2-5	rs6882776-G	0.717	2E-14		0.044	[0.032-0.056] unit decrease	Affymetrix [~ 9000000] (imputed)	N
1902	chr5	172664162	172664163	rs6882776	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	5q35.1	NKX2-5	rs6882776-G	0.67	3E-14		1.06	[1.05-1.08]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1902	chr5	172664162	172664163	rs6882776	23583979	den Hoed M	2013-04-14	Nat Genet	Identification of heart rate-associated loci and their effects on cardiac conduction and rhythm disorders.	Heart rate	85,787 European ancestry individuals, 6,568 Indian Asian ancestry indiviudals	88,823 European ancestry individuals	5q35.1	NKX2-5	rs6882776-G	0.68	2E-12		0.301	[0.20-0.40] unit increase	Affymetrix, Illumina [2516789] (imputed)	N
1902	chr5	172669770	172669771	rs10071514	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	5q35.1	NR	rs10071514-G	0.28582	2E-10		0.013727	[0.0095-0.0179] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1902	chr5	172670611	172670611	rs35564079	34274964	Duijvenboden S	2021-07-19	Hum Mol Genet	Genomic and pleiotropic analyses of resting QT interval identifies novel loci and overlap with atrial electrical disorders.	QT interval	27,612 European ancestry women	NA	5q35.1		rs35564079-C	0.72	2E-10		0.041	[0.027-0.055] unit decrease	Affymetrix [NR]	N
1902	chr5	172670744	172670745	rs6891790	34274964	Duijvenboden S	2021-07-19	Hum Mol Genet	Genomic and pleiotropic analyses of resting QT interval identifies novel loci and overlap with atrial electrical disorders.	QT interval	52,107 European ancestry individuals	48,997 individuals	5q35.1		rs6891790-T	0.2913	9E-16		0.67	[0.51-0.83] unit increase	Affymetrix [9800000]	N
1902	chr5	172670744	172670745	rs6891790	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	5q35.1	NKX2-5	rs6891790-G	0.717	5E-22		1.08	[1.06-1.09]	Illumina [34740186] (imputed)	N
1902	chr5	172670744	172670745	rs6891790	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	5q35.1	NKX2-5, STC2	rs6891790-G	0.71	1E-14	(EA)	1.07	[1.05-1.09]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1902	chr5	172673318	172673319	rs6884881	32386560	Ramirez J	2020-04-29	Am J Hum Genet	Common Genetic Variants Modulate the Electrocardiographic Tpeak-to-Tend Interval.	TPE interval (resting)	71,338 European ancestry individuals	NA	5q35.1	NKX2-5	rs6884881-T	0.433	3E-8	(men)	0.042	[0.026-0.058] unit decrease	Affymetrix [~ 9000000] (imputed)	N
1902	chr5	172674876	172674877	rs6874428	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atrial fibrillation/atrial flutter	29,212 European ancestry cases, 400,539 European ancestry controls, 4,150 East Asian ancestry cases, 155,540 East Asian ancestry controls	NA	5q35.1		rs6874428-C	NR	3E-14		0.0752	[0.056-0.095] unit decrease	Affymetrix, Illumina [25830072] (imputed)	N
1902	chr5	172675052	172675053	rs62378333	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	20,917 European ancestry cases, 440,906 European ancestry controls, 14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	5q35.1		rs62378333-G	NR	3E-8		0.0592	[0.038-0.08] unit decrease	Affymetrix, Illumina [25841367] (imputed)	N
1902	chr5	172723980	172723981	rs13436374	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Sub-cortical grey matter volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	5q35.1	NR	rs13436374-?		6E-6				Illumina [4322238] (imputed)	N
1902	chr5	172724871	172724872	rs11747973	30920136	Stapleton CP	2019-02-27	Am J Transplant	The impact of donor and recipient common clinical and genetic variation on estimated glomerular filtration rate in a European renal transplant population.	Estimated glomerular filtration rate after 5 years in renal transplantation (donor effect)	Up to 2,921 European ancestry individuals	NA	5q35.1	intergenic	rs11747973-T	NR	6E-6				Illumina [up to 3951530] (imputed)	N
1902	chr5	172745993	172745994	rs3756531	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	5q35.2	STC2	rs3756531-C	NR	1E-9		0.0476921	[0.032-0.063] unit decrease	Affymetrix [321016] (imputed)	N
1902	chr5	172748501	172748502	rs3836828	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	5q35.2	STC2	rs3836828-TG	NR	2E-14		0.0215394	[0.016-0.027] unit decrease	Affymetrix [319769] (imputed)	N
1902	chr5	172748501	172748502	rs3836828	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	5q35.2	STC2	rs3836828-TG	NR	2E-14		0.0216175	[0.016-0.027] unit decrease	Affymetrix [319769] (imputed)	N
1902	chr5	172748501	172748502	rs3836828	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	5q35.2	STC2	rs3836828-TG	NR	4E-8		0.015418	[0.0099-0.0209] unit increase	Affymetrix [321016] (imputed)	N
1902	chr5	172748501	172748502	rs3836828	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	5q35.2	STC2	rs3836828-TG	NR	3E-8		0.0157724	[0.01-0.021] unit decrease	Affymetrix [321169] (imputed)	N
1902	chr5	172748539	172748540	rs4867699	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	5q35.2	STC2	rs4867699-T	0.507372	2E-8		0.014715	[0.0096-0.0199] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1902	chr5	172748678	172748679	rs4868256	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	5q35.2	NR	rs4868256-?	NR	3E-11				Affymetrix [~ 8270000] (imputed)	N
1902	chr5	172748678	172748679	rs4868256	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	5q35.2		rs4868256-?	NR	8E-12				NR [~ 8900000] (imputed)	N
1903	chr5	172753554	172753555	rs6874142	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	5q35.2	STC2	rs6874142-T	0.8862	2E-14		0.0242	[0.018-0.03] unit decrease	Affymetrix [18391927] (imputed)	N
1903	chr5	172753554	172753555	rs6874142	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	5q35.2	STC2	rs6874142-?	NR	2E-6		0.050507315	[0.03-0.072] unit increase	Illumina [27896057] (imputed)	N
1903	chr5	172753554	172753555	rs6874142	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5q35.2		rs6874142-?	NR	2E-47				NR [~ 8900000] (imputed)	N
1903	chr5	172755065	172755066	rs148833559	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Height	458,235 European ancestry individuals	NA	5q35.2		rs148833559-?	NR	9E-40		0.28548	[0.24-0.33] unit increase	NR [9800000] (imputed)	N
1903	chr5	172755065	172755066	rs148833559	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	5q35.2	STC2	rs148833559-A	0.0014	9E-52		0.3796	[0.33-0.43] unit increase	Affymetrix [18391927] (imputed)	N
1903	chr5	172755065	172755066	rs148833559	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	244,730 European ancestry women	NA	5q35.2	STC2	rs148833559-A	0.001	1E-30		0.38	[0.31-0.45] unit increase	Affymetrix [18391927] (imputed)	N
1903	chr5	172755065	172755066	rs148833559	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	205,513 European ancestry men	NA	5q35.2	STC2	rs148833559-A	0.001	7E-25		0.38	[0.31-0.45] unit increase	Affymetrix [18391927] (imputed)	N
1903	chr5	172755065	172755066	rs148833559	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	5q35.2	NR	rs148833559-A	0.0014340000000000463	1E-8		0.063053	[0.041-0.085] unit increase	Affymetrix [16582909] (imputed)	N
1903	chr5	172755065	172755066	rs148833559	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	5q35.2	NR	rs148833559-A	0.0013883	2E-11		0.884736	[0.63-1.14] unit increase	Affymetrix [21375087] (imputed)	N
1903	chr5	172755065	172755066	rs148833559	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	5q35.2	NR	rs148833559-A	0.0014773	6E-11		0.556386	[0.38-0.73] unit increase	Affymetrix [17914406] (imputed)	N
1903	chr5	172758795	172758796	rs6881592	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	5q35.2	STC2	rs6881592-A	0.6347	3E-21		0.0182	[0.014-0.022] unit increase	Affymetrix [18391927] (imputed)	N
1903	chr5	172764665	172764666	rs62377262	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PCDHAC1	5,354 Icelandic ancestry individuals	NA	5q35.2		rs62377262-T	0.01768	1E-12		0.121268	[0.088-0.155] unit increase	Illumina [7506463] (imputed)	N
1903	chr5	172779474	172779475	rs11954548	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	5q35.2	RNU6-500P	rs11954548-T	NR	9E-9		0.0201405	[0.013-0.027] unit increase	Affymetrix [323123] (imputed)	N
1903	chr5	172801106	172801107	rs6883311	28698626	Lopez-Mejias R	2017-07-11	Sci Rep	A genome-wide association study suggests the HLA Class II region as the major susceptibility locus for IgA vasculitis.	Immunoglobulin A vasculitis	285 European ancestry cases, 1,006 European ancestry controls	NA	5q35.2	STC2, LOC105377732	rs6883311-T		5E-6		1.62	[1.32-1.99]	Illumina [1909910] (imputed)	N
1903	chr5	172827352	172827353	rs17075892	33898419	Mukhopadhyay N	2021-04-09	Front Cell Dev Biol	Genome-Wide Association Study of Non-syndromic Orofacial Clefts in a Multiethnic Sample of Families and Controls Identifies Novel Regions.	Nonsyndromic cleft lip with or without cleft palate	154 African ancestry cases, 274 African ancestry controls, 445 Asian ancestry cases, 1,246 Asian ancestry controls, 569 European ancestry cases, 2,704 European ancestry controls, 1,050 Central and South American cases, 2,988 Central and South American controls, 3 cases, 14 controls	NA	5q35.2	NR	rs17075892-T		7E-8		0.25	[0.17-0.33] unit decrease	Illumina [NR] (imputed)	N
1903	chr5	172827953	172827954	rs4868270	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Unilateral cleft lip and palate	205 Asian ancestry cases, 315 European ancestry cases, 692 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	5q35.2	NR	rs4868270-?	NR	4E-6		0.61	[0.57-0.65]	Illumina [539000] (imputed)	N
1903	chr5	172829301	172829302	rs7720513	31447353	Maciukiewicz M	2019-08-22	Schizophr Res	Genome-wide association study on antipsychotic-induced weight gain in Europeans and African-Americans.	Antipsychotic drug-induced weight gain in schizophrenia	144 European ancestry individuals, 57 African American individuals	NA	5q35.2	STC2	rs7720513-?		1E-6	(EA)	0.406	unit increase	Illumina [1819374] (imputed)	N
1903	chr5	172839288	172839289	rs10780116	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5q35.2		rs10780116-?	NR	2E-14				NR [~ 8900000] (imputed)	N
1903	chr5	172844415	172844416	rs10039526	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	5q35.2	NR	rs10039526-?	NR	2E-6	(AA)	13.42	[11.97-14.87]	Illumina [905956]	N
1903	chr5	172853165	172853166	rs71611181	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	5q35.2	Intergenic	rs71611181-T	NR	8E-6	(women)	0.0871761	[0.049-0.125] unit increase	Illumina [13520550] (imputed)	N
1903	chr5	172873919	172873920	rs7705819	26089329	Carty CL	2015-06-18	Stroke	Meta-Analysis of Genome-Wide Association Studies Identifies Genetic Risk Factors for Stroke in African Americans.	Stroke	up to 1,592 African American cases, up to 13,154 African American controls	NA	5q35.2	SUMO2P6, GAPDHP71	rs7705819-T	0.64	9E-7		0.23	[0.13-0.33] unit increase	Affymetrix, Illumina [up to 2600000] (imputed)	N
1904	chr5	172899152	172899153	rs7718910	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	5q35.2	CTB-164N12.1	rs7718910-T	NR	1E-9		0.0174497	[0.012-0.023] unit decrease	Affymetrix [321016] (imputed)	N
1904	chr5	172908862	172908863	rs811013	32844198	Dumitrescu L	2020-08-01	Brain	Genetic variants and functional pathways associated with resilience to Alzheimer's disease.	Residual cognitive resilience	5,108 European ancestry individuals (unimpaired cognition, mild cognitive impairment or Alzheimer's disease)	NA	5q35.2	NR	rs811013-?	0.2252	9E-6		0.087268	[0.049-0.126] unit increase	Affymetrix, Illumina [4840740] (imputed)	N
1904	chr5	172934897	172934898	rs7722022	19165155	Ling H	2009-01-22	Obesity (Silver Spring)	Genome-wide linkage and association analyses to identify genes influencing adiponectin levels: the GEMS Study.	Adiponectin levels	997 European ancestry cases, 989 European ancestry controls	NA	5q35.2	intergenic	rs7722022-?	NR	9E-6				Affymetrix [398625]	N
1904	chr5	172939425	172939426	rs6869841	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	5q35.2	NR	rs6869841-T	0.201	2E-6	(IFNalpha_ABC_of_CD56dimCD16p)			Illumina [5084123] (imputed)	N
1904	chr5	172939425	172939426	rs6869841	23535732	Eeles RA	2013-04-01	Nat Genet	Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array.	Prostate cancer	11,085 European ancestry cases, 11,463 European ancestry controls	19,662 European ancestry cases, 19,715 European ancestry controls	5q35.2	BOD1, FAM44B, LOC285593, STC2	rs6869841-A	0.21	5E-8		1.07	[1.04-1.11]	Illumina [~ 2600000] (imputed)	N
1904	chr5	172958942	172958943	rs17076061	33782385	Andlauer TFM	2021-03-29	Transl Psychiatry	Genetic factors influencing a neurobiological substrate for psychiatric disorders.	Common neurobiological substrate measurement (PC1)	2,271 individuals	865 individuals	5q35.2	NR	rs17076061-T	0.355238095	1E-9		0.20503458	[0.14-0.27] unit decrease	Affymetrix, Illumina [up to 8620154] (imputed)	N
1904	chr5	172959029	172959030	rs9686557	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	5q35.2	NR	rs9686557-C	NR	4E-7		1.035	[1.02-1.05]	Affymetrix, Illumina [29235255] (imputed)	N
1904	chr5	172965382	172965383	rs4867716	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	5q35.2	CTB-33O18.1	rs4867716-C	NR	8E-12		0.0237173	[0.017-0.031] unit decrease	Affymetrix [323123] (imputed)	N
1904	chr5	172975690	172975691	rs10866665	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	5q35.2	CTB-33O18.1	rs10866665-C	NR	2E-9		0.0197463	[0.013-0.026] unit increase	Affymetrix [323858] (imputed)	N
1904	chr5	172978275	172978276	rs6867566	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	5q35.2	CTB-33O18.1	rs6867566-T	NR	2E-18		0.0274004	[0.021-0.034] unit increase	Affymetrix [323123] (imputed)	N
1904	chr5	172981816	172981817	rs62380164	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	5q35.2	CTB-33O18.1	rs62380164-A	NR	4E-9		0.0220612	[0.015-0.029] unit decrease	Affymetrix [321016] (imputed)	N
1904	chr5	172983278	172983279	rs6885032	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	5q35.2	NR	rs6885032-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
1904	chr5	172983278	172983279	rs6885032	25865494	Chan Y	2015-04-09	Am J Hum Genet	Genome-wide Analysis of Body Proportion Classifies Height-Associated Variants by Mechanism of Action and Implicates Genes Important for Skeletal Development.	Sitting height ratio	3,545 African American individuals, 12,965 European ancestry women, 8,625 European ancestry men	NA	5q35.2	NR	rs6885032-G	0.652	2E-6	(EA)	0.049	[0.029-0.069] unit increase	Affymetrix, Illumina [up to 10250422] (imputed)	N
1904	chr5	172983278	172983279	rs6885032	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in overweight individuals	up to 10,058 European ancestry male individuals, up to 7,189 European ancestry female individuals	NA	5q35.2	STC2, BOD1	rs6885032-C	0.36	5E-6	(men)	0.067	[0.038-0.096] kg/m2 decrease	Affymetrix, Illumina [at least 188473] (imputed)	N
1904	chr5	172983456	172983457	rs4867721	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	5q35.2	CTB-33O18.1	rs4867721-G	NR	3E-14		0.0219111	[0.016-0.028] unit increase	Affymetrix [321016] (imputed)	N
1904	chr5	172984113	172984114	rs889014	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	5q35.2	STC2, BOD1	rs889014-T	0.44	2E-9		0.047	[0.031-0.063] unit decrease	Affymetrix, Illumina [2704730] (imputed)	N
1904	chr5	172984113	172984114	rs889014	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	5q35.2	BOD1	rs889014-T	0.36	9E-16		0.03	[NR] unit decrease	Affymetrix, Illumina [2834208] (imputed)	N
1904	chr5	172990491	172990492	rs13183901	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	5q35.2	CTB-33O18.1	rs13183901-C	NR	2E-8		0.0167035	[0.011-0.022] unit decrease	Affymetrix [321016] (imputed)	N
1904	chr5	172990491	172990492	rs13183901	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5q35.2		rs13183901-?	NR	8E-51				NR [~ 8900000] (imputed)	N
1904	chr5	172991572	172991573	rs2112676	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	5q35.2	CTB-33O18.1	rs2112676-T	NR	3E-12		0.0250373	[0.018-0.032] unit decrease	Affymetrix [323123] (imputed)	N
1904	chr5	172994623	172994624	rs7733195	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	5q35.2	AC008663.1	rs7733195-A	0.3494	4E-21		0.0189	[0.015-0.023] unit decrease	Affymetrix [18391927] (imputed)	N
1904	chr5	172994623	172994624	rs7733195	25865494	Chan Y	2015-04-09	Am J Hum Genet	Genome-wide Analysis of Body Proportion Classifies Height-Associated Variants by Mechanism of Action and Implicates Genes Important for Skeletal Development.	Sitting height ratio	3,545 African American individuals, 12,965 European ancestry women, 8,625 European ancestry men	NA	5q35.2	FAM44B	rs7733195-G	0.65	6E-9		0.066	[0.044-0.088] unit increase	Affymetrix, Illumina [up to 10250422] (imputed)	N
1904	chr5	172994743	172994744	rs11747139	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	5q35.2	CTB-33O18.1	rs11747139-C	NR	7E-11		0.0214807	[0.015-0.028] unit decrease	Affymetrix [321016] (imputed)	N
1904	chr5	172997077	172997078	rs6556079	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	5q35.2	FAM44B	rs6556079-A	0.5982	4E-10	(EA)	0.0278	[0.019-0.037] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1904	chr5	172997077	172997078	rs6556079	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	5q35.2	FAM44B	rs6556079-A	0.5982	1E-6	(EA,men)	0.033	[0.02-0.046] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1904	chr5	172997977	172997978	rs17738166	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	5q35.2		rs17738166-A	0.339108	8E-14		0.0157743	[0.012-0.02] unit decrease	Illumina [13479295] (imputed)	N
1904	chr5	172997977	172997978	rs17738166	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	5q35.2	CTB-33O18.1	rs17738166-A	NR	4E-14		0.0217264	[0.016-0.027] unit decrease	Affymetrix [321016] (imputed)	N
1904	chr5	172997977	172997978	rs17738166	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	5q35.2	CTB-33O18.1	rs17738166-A	NR	1E-8		0.0177949	[0.012-0.024] unit decrease	Affymetrix [323123] (imputed)	N
1904	chr5	172997977	172997978	rs17738166	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	5q35.2	MIR8056, LOC285593	rs17738166-?	NR	6E-16		0.024228724	[0.018-0.03] unit decrease	Illumina [27896057] (imputed)	N
1904	chr5	172997977	172997978	rs17738166	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	5q35.2	NA	rs17738166-A	0.3974	4E-10		0.0114	[0.0079-0.0149] unit increase	NR [~ 27400000] (imputed)	N
1904	chr5	172998749	172998750	rs960192	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	5q35.2	LOC285593	rs960192-C	0.399892	4E-21		0.0177936	[0.014-0.021] unit decrease	NR [13737936] (imputed)	N
1904	chr5	172999526	172999527	rs7703857	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	5q35.2		rs7703857-?	NR	3E-23				NR [~ 8900000] (imputed)	N
1904	chr5	173000001	173000002	rs7704555	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	5q35.2	CTB-33O18.1	rs7704555-C	NR	2E-18		0.0282925	[0.022-0.035] unit decrease	Affymetrix [323123] (imputed)	N
1904	chr5	173000834	173000834	rs35774141	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	5q35.2		rs35774141-?	NR	1E-18		0.0185889	[0.014-0.023] unit decrease	Affymetrix [20259828] (imputed)	N
1904	chr5	173002890	173002891	rs4868293	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	5q35.2	CTB-33O18.2	rs4868293-A	NR	2E-9		0.0184408	[0.012-0.024] unit increase	Affymetrix [323123] (imputed)	N
1904	chr5	173003223	173003224	rs2339962	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	5q35.2	CTB-33O18.2	rs2339962-A	NR	1E-8		0.0201856	[0.013-0.027] unit decrease	Affymetrix [321016] (imputed)	N
1904	chr5	173003223	173003224	rs2339962	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	5q35.2	CTB-33O18.2	rs2339962-A	NR	3E-8		0.0214764	[0.014-0.029] unit decrease	Affymetrix [323123] (imputed)	N
1904	chr5	173014275	173014276	rs10059472	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	5q35.2	CTB-33O18.3	rs10059472-C	NR	1E-13		0.0237143	[0.017-0.03] unit decrease	Affymetrix [323123] (imputed)	N
1905	chr5	173017086	173017087	rs1363605	27151647	Chen G	2016-05-05	Addict Biol	An association study revealed substantial effects of dominance, epistasis and substance dependence co-morbidity on alcohol dependence symptom count.	Alcohol dependence symptom count	2,605 European ancestry individuals, 1,233 African American individuals	NA	5q35.2	CTB-33O18.3	rs1363605-?		1E-15	(additive)	0.367	[0.28-0.46] unit increase	Illumina [974863]	N
1905	chr5	173020292	173020292	rs113926243	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	5q35.2	CTB-33O18.3	rs113926243-AATGC	NR	1E-14		0.023051	[0.017-0.029] unit decrease	Affymetrix [321016] (imputed)	N
1905	chr5	173021454	173021455	rs6897707	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	5q35.2	NR	rs6897707-?	NR	1E-9				Affymetrix [NR]	N
1905	chr5	173022228	173022229	rs370571	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	5q35.2	CTB-33O18.3	rs370571-G	NR	3E-10		0.0193224	[0.013-0.025] unit decrease	Affymetrix [323123] (imputed)	N
1905	chr5	173022920	173022921	rs428925	29782485	Rueger S	2018-05-21	PLoS Genet	Evaluation and application of summary statistic imputation to discover new height-associated loci.	Height	253,288 European ancestry individuals	336,474 European ancestry individuals	5q35.2	intergenic	rs428925-A	0.724147051044697	4E-13		0.012491063	unit increase	NR [9276018] (imputed)	N
1905	chr5	173035117	173035118	rs258859	31586183	Niazi Y	2019-10-04	Mutagenesis	Distinct pathways associated with chromosomal aberration frequency in a cohort exposed to genotoxic compounds compared to general population.	Chromosomal aberration frequency (chromatid type)	866 European and unknown ancestry individuals	NA	5q35.2	BOD1	rs258859-?	NR	6E-6		0.16	[0.09-0.23] unit increase	Illumina [> 2600000] (imputed)	N
1905	chr5	173054909	173054910	rs6894037	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	5q35.2	BOD1, LINC01942	rs6894037-?	NR	3E-13		0.4988	[0.36-0.64] unit increase	Affymetrix [11100000] (imputed)	N
1905	chr5	173054916	173054917	rs6875105	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	5q35.2	BOD1	rs6875105-?		8E-9				Affymetrix, Illumina [NR] (imputed)	N
1905	chr5	173058310	173058311	rs188737454	29532581	Hallfors J	2018-03-13	Addict Biol	Genome-wide association study in Finnish twins highlights the connection between nicotine addiction and neurotrophin signaling pathway.	Nicotine withdrawal symptom count	1,703 Finnish ancestry ever smoker individuals from up to 739 families	NA	5q35.2	NR	rs188737454-C	0.047	5E-6		0.78	[0.45-1.11] unit increase	Illumina [9469131] (imputed)	N
1905	chr5	173075212	173075213	rs9885207	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	5q35.2	CTB-43E15.1	rs9885207-C	0.415352	1E-14		0.017414361	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1905	chr5	173075212	173075213	rs9885207	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	5q35.2	CTB-43E15.1	rs9885207-C	0.415324	5E-14		0.017012982	[0.013-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1905	chr5	173075212	173075213	rs9885207	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	5q35.2		rs9885207-?	NR	5E-16				NR [~ 8900000] (imputed)	N
1905	chr5	173078222	173078223	rs13176815	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	5q35.2		rs13176815-?	NR	1E-21				NR [~ 8900000] (imputed)	N
1905	chr5	173102230	173102231	rs9313643	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	5q35.2	NR	rs9313643-?	NR	2E-12				Affymetrix [NR]	N
1905	chr5	173120651	173120652	rs57406157	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		LINC01942	rs57406157-?	NR	5E-9	(female)	2.89317	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1905	chr5	173131456	173131457	rs4868304	25866641	Xu W	2015-03-19	Biomark Res	A genome wide association study on Newfoundland colorectal cancer patients' survival outcomes.	Survival in rectal cancer	171 European ancestry cases	NA	5q35.2	intergenic	rs4868304-?		3E-7	(disease-free survival)	2.91	[1.94-4.37]	Illumina [729737]	N
1905	chr5	173136666	173136667	rs755643	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	5q35.2	NR	rs755643-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1905	chr5	173136666	173136667	rs755643	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	5q35.2		rs755643-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1906	chr5	173176478	173176479	rs72809316	32121467	Adewuyi EO	2020-02-29	Genes (Basel)	Shared Molecular Genetic Mechanisms Underlie Endometriosis and Migraine Comorbidity.	Endometriosis or migraine	17,054 European and Japanese ancestry endometriosis cases, 29,208 European ancestry migraine cases, 191,858 European and Japanese ancestry controls, 172,931 European ancestry controls	NA	5q35.2	NR	rs72809316-A	NR	6E-6	(random effect)	1.05	NR	NR [6904914] (imputed)	N
1906	chr5	173204297	173204298	rs2546753	30954325	Kamboh MI	2019-03-11	Neurobiol Aging	Population-based genome-wide association study of cognitive decline in older adults free of dementia: identification of a novel locus for the attention domain.	Age-related cognitive decline (executive function) (slope of z-scores)	1,145 European ancestry individuals	NA	5q35.2	LOC101928136, LOC101928154	rs2546753-A	0.27	3E-6		0.21	unit decrease	Illumina [5600000] (imputed)	N
1906	chr5	173205224	173205225	rs791357	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	5q35.2		rs791357-T	0.278	5E-25				Affymetrix [10369434] (imputed)	N
1906	chr5	173205224	173205225	rs791357	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	5q35.2	intergenic	rs791357-C	0.7204	6E-24		0.0409616	[0.033-0.049] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1906	chr5	173205224	173205225	rs791357	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	5q35.2	intergenic	rs791357-C	0.7204	2E-24		0.04142388	[0.033-0.049] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1906	chr5	173205224	173205225	rs791357	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	5q35.2	intergenic	rs791357-C	0.7204	1E-24		0.0414957	[0.034-0.049] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1906	chr5	173205224	173205225	rs791357	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	5q35.2	intergenic	rs791357-C	0.7204	2E-24		0.04154652	[0.034-0.05] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1906	chr5	173205224	173205225	rs791357	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	5q35.2	intergenic	rs791357-C	0.7204	6E-24		0.04104193	[0.033-0.049] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1906	chr5	173205281	173205282	rs2561758	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	5q35.2		rs2561758-G	NR	1E-37		0.0345	[0.029-0.04] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1906	chr5	173205281	173205282	rs2561758	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	5q35.2		rs2561758-G	NR	9E-35		0.033	[0.028-0.038] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
1906	chr5	173205281	173205282	rs2561758	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	5q35.2		rs2561758-G	NR	4E-17		0.022	[0.017-0.027] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
1906	chr5	173205281	173205282	rs2561758	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	5q35.2	NR	rs2561758-G	0.7225	5E-44		0.03478122	[0.03-0.04] unit decrease	Affymetrix [93095623] (imputed)	N
1906	chr5	173205281	173205282	rs2561758	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	5q35.2		rs2561758-G	0.722551	7E-38		0.03221702	[0.027-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
1906	chr5	173205281	173205282	rs2561758	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q35.2	NR	rs2561758-G	0.727742	4E-64				Affymetrix, Illumina [24649327] (imputed)	N
1906	chr5	173205281	173205282	rs2561758	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	5q35.2	NR	rs2561758-G	0.723119	4E-68		0.03629	[0.032-0.04] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1906	chr5	173205281	173205282	rs2561758	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q35.2	NR	rs2561758-G	0.727739	2E-51				Affymetrix, Illumina [23114412] (imputed)	N
1906	chr5	173205281	173205282	rs2561758	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	5q35.2	NR	rs2561758-G	0.72298	3E-55		0.034011	[0.03-0.038] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
1906	chr5	173205281	173205282	rs2561758	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	5q35.2		rs2561758-?	NR	1E-48				NR [~ 8900000] (imputed)	N
1906	chr5	173205281	173205282	rs2561758	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	5q35.2		rs2561758-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1906	chr5	173205317	173205318	rs2594836	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	5q35.2		rs2594836-A	0.722466	2E-12		0.017593738	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1906	chr5	173205317	173205318	rs2594836	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q35.2	NR	rs2594836-A	0.726787	8E-12				Affymetrix, Illumina [19905671] (imputed)	N
1906	chr5	173205317	173205318	rs2594836	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	5q35.2	NR	rs2594836-A	0.722276	2E-14		0.017777	[0.013-0.022] SD unit decrease	Affymetrix, Illumina [50036608] (imputed)	N
1906	chr5	173205317	173205318	rs2594836	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	5q35.2	intergenic	rs2594836-A	0.7208	1E-25		0.0425945	[0.035-0.051] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1906	chr5	173207172	173207173	rs78963022	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	5q35.2		rs78963022-A	NR	5E-7		4.4502	[2.76-6.14] unit increase	Illumina [NR] (imputed)	N
1906	chr5	173207352	173207353	rs360017	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	5q35.2		rs360017-G	NR	4E-13		0.0206	[0.015-0.026] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
1906	chr5	173207352	173207353	rs360017	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	5q35.2		rs360017-A	0.225	1E-11				Affymetrix [10369434] (imputed)	N
1906	chr5	173207352	173207353	rs360017	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	5q35.2		rs360017-A	0.225132	7E-19		0.023680404	[0.018-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
1906	chr5	173207352	173207353	rs360017	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	5q35.2		rs360017-G	0.774898	9E-17		0.022097843	[0.017-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1906	chr5	173207352	173207353	rs360017	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q35.2	NR	rs360017-G	0.810493	8E-25				Affymetrix, Illumina [23467995] (imputed)	N
1906	chr5	173207352	173207353	rs360017	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	5q35.2	NR	rs360017-G	0.775236	2E-27		0.024481	[0.02-0.029] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1906	chr5	173207352	173207353	rs360017	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q35.2	NR	rs360017-G	0.810423	3E-18				Affymetrix, Illumina [23472807] (imputed)	N
1906	chr5	173207352	173207353	rs360017	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	5q35.2	NR	rs360017-G	0.775253	2E-20		0.021106	[0.017-0.026] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1906	chr5	173207352	173207353	rs360017	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	5q35.2	intergenic	rs360017-G	0.7751	2E-11		0.02907194	[0.021-0.038] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1906	chr5	173212570	173212571	rs812619	33539483	Li Z	2021-02-04	PLoS One	Bivariate genome-wide association study (GWAS) of body mass index and blood pressure phenotypes in northern Chinese twins.	Body mass index and systolic blood pressure (bivariate analysis)	274 Chinese ancestry dizygotic twins	NA	5q35.2	LOC107986482	rs812619-?	NR	9E-6				Illumina [7401356] (imputed)	N
1906	chr5	173223237	173223238	rs791371	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5q35.2	FAM44B	rs791371-?	NR	2E-6	(CE 20:3)	0.1957509	[0.11-0.28] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1906	chr5	173260644	173260645	rs360014	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	5q35.2	CTB-43E15.4	rs360014-A	NR	6E-9		0.0176129	[0.012-0.024] unit decrease	Affymetrix [321169] (imputed)	N
1906	chr5	173264071	173264072	rs4868329	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	5q35.2	CTB-43E15.4	rs4868329-T	NR	2E-8		0.0196218	[0.013-0.027] unit increase	Affymetrix [321169] (imputed)	N
1906	chr5	173264071	173264072	rs4868329	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	5q35.2	NR	rs4868329-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
1906	chr5	173264071	173264072	rs4868329	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	5q35.2	NR	rs4868329-?	NR	6E-10				Affymetrix [~ 8270000] (imputed)	N
1906	chr5	173269295	173269296	rs12523573	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5q35.2	HMP19	rs12523573-?	NR	4E-6	(threonine)	0.4407701	[0.25-0.63] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1906	chr5	173269499	173269500	rs62376897	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	5q35.2	CTB-43E15.4	rs62376897-G	NR	3E-10		0.0181533	[0.012-0.024] unit increase	Affymetrix [319769] (imputed)	N
1906	chr5	173269499	173269500	rs62376897	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	5q35.2	CTB-43E15.4	rs62376897-G	NR	2E-10		0.0183842	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
1906	chr5	173269499	173269500	rs62376897	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	5q35.2	CTB-43E15.4	rs62376897-G	NR	3E-10		0.0183448	[0.013-0.024] unit increase	Affymetrix [321114] (imputed)	N
1906	chr5	173269499	173269500	rs62376897	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	5q35.2	CTB-43E15.4	rs62376897-G	NR	9E-12		0.0198951	[0.014-0.026] unit increase	Affymetrix [321169] (imputed)	N
1906	chr5	173269668	173269669	rs58403690	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	5q35.2	CTB-43E15.4	rs58403690-C	NR	2E-14		0.0241841	[0.018-0.03] unit increase	Affymetrix [319769] (imputed)	N
1906	chr5	173269668	173269669	rs58403690	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	5q35.2	CTB-43E15.4	rs58403690-C	NR	5E-15		0.0246747	[0.018-0.031] unit increase	Affymetrix [319769] (imputed)	N
1906	chr5	173269668	173269669	rs58403690	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	5q35.2	CTB-43E15.4	rs58403690-C	NR	4E-14		0.0240076	[0.018-0.03] unit increase	Affymetrix [321114] (imputed)	N
1906	chr5	173269668	173269669	rs58403690	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	5q35.2	CTB-43E15.4	rs58403690-C	NR	2E-17		0.0270834	[0.021-0.033] unit increase	Affymetrix [321169] (imputed)	N
1906	chr5	173270327	173270328	rs10035782	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	5q35.2	CTB-43E15.4	rs10035782-G	NR	8E-10		0.0178183	[0.012-0.024] unit decrease	Affymetrix [319769] (imputed)	N
1906	chr5	173270327	173270328	rs10035782	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	5q35.2	CTB-43E15.4	rs10035782-G	NR	5E-10		0.0180258	[0.012-0.024] unit decrease	Affymetrix [319769] (imputed)	N
1906	chr5	173270327	173270328	rs10035782	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	5q35.2	CTB-43E15.4	rs10035782-G	NR	8E-9		0.0168983	[0.011-0.023] unit decrease	Affymetrix [321169] (imputed)	N
1906	chr5	173270613	173270614	rs10476086	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	5q35.2	NR	rs10476086-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
1906	chr5	173274249	173274250	rs55696724	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	5q35.2		rs55696724-C	NR	5E-13		0.0159	[0.012-0.02] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
1907	chr5	173277238	173277239	rs10078719	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	5q35.2	NR	rs10078719-?	NR	7E-15				Affymetrix [~ 8270000] (imputed)	N
1907	chr5	173277246	173277247	rs192829047	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	5q35.2	NR	rs192829047-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
1907	chr5	173277246	173277247	rs192829047	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	5q35.2		rs192829047-?	NR	6E-9				NR [~ 8900000] (imputed)	N
1907	chr5	173277246	173277247	rs192829047	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	5q35.2	NA	rs192829047-T	0.9848	1E-9		0.05	[0.034-0.066] unit decrease	NR [~ 27400000] (imputed)	N
1907	chr5	173279807	173279808	rs359456	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	5q35.2		rs359456-T	0.432	1E-12		0.008	[0.006-0.01] unit increase	NR [NR] (imputed)	N
1907	chr5	173279807	173279808	rs359456	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	5q35.2	CPEB4	rs359456-T	NR	1E-15		0.0226469	[0.017-0.028] unit increase	Affymetrix [319769] (imputed)	N
1907	chr5	173279807	173279808	rs359456	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	5q35.2	CPEB4	rs359456-T	NR	3E-16		0.0232522	[0.018-0.029] unit increase	Affymetrix [319769] (imputed)	N
1907	chr5	173279807	173279808	rs359456	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	5q35.2	CPEB4	rs359456-T	NR	4E-15		0.0225022	[0.017-0.028] unit increase	Affymetrix [321114] (imputed)	N
1907	chr5	173279841	173279842	rs359457	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	5q35.2	CPEB4	rs359457-C	NR	5E-17		0.0240159	[0.018-0.03] unit increase	Affymetrix [321169] (imputed)	N
1907	chr5	173279841	173279842	rs359457	24097067	Lessard CJ	2013-11-01	Nat Genet	Variants at multiple loci implicated in both innate and adaptive immune responses are associated with Sjogren's syndrome.	Sjogren's syndrome	1,541 European ancestry cases, 2,634 European ancestry controls	NA	5q35.2	CPEB4	rs359457-T	0.55	9E-7		1.2658228	[1.25-1.39]	Illumina [102585]	N
1907	chr5	173279841	173279842	rs359457	21102463	Franke A	2010-11-21	Nat Genet	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry trios	5q35.2	CPEB4	rs359457-T	0.571	3E-12		1.08	[1.04-1.12]	Affymetrix, Illumina [953241] (imputed)	N
1907	chr5	173281684	173281685	rs7731717	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	5q35.2	NR	rs7731717-T	0.621	4E-18		0.0174	[0.013-0.021] unit decrease	NR [~ 27400000] (imputed)	N
1907	chr5	173281776	173281777	rs10070064	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	5q35.2	NR	rs10070064-?	NR	2E-34				Affymetrix [~ 8270000] (imputed)	N
1907	chr5	173281776	173281777	rs10070064	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	5q35.2	NR	rs10070064-?	NR	1E-21				Affymetrix [~ 8270000] (imputed)	N
1907	chr5	173281776	173281777	rs10070064	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	5q35.2	NA	rs10070064-T	0.2645	4E-18		0.0175	[0.014-0.021] unit increase	NR [~ 27400000] (imputed)	N
1907	chr5	173283264	173283265	rs359443	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	5q35.2	CPEB4	rs359443-A	0.1555	6E-10		0.021988163	[0.015-0.029] unit decrease	Affymetrix [~ 11515000] (imputed)	N
1907	chr5	173284932	173284933	rs2659187	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin	108,054 Japanese ancestry individuals	NA	5q35.2	LINC01485, CPEB4	rs2659187-?	NR	9E-12		0.02955	[0.021-0.038] unit decrease novel	Illumina [6108953] (imputed)	N
1907	chr5	173287762	173287763	rs875742	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	5q35.2		rs875742-A	NR	8E-41		0.0277	[0.024-0.032] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
1907	chr5	173287762	173287763	rs875742	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	5q35.2		rs875742-A	0.270152	1E-15		0.0322979	[0.024-0.04] unit decrease	Illumina [13476266] (imputed)	N
1907	chr5	173287762	173287763	rs875742	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	5q35.2		rs875742-A	NR	5E-41		0.0278	[0.024-0.032] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
1907	chr5	173287762	173287763	rs875742	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	5q35.2		rs875742-A	0.270359	7E-13		0.0292722	[0.021-0.037] unit decrease	Illumina [13476299] (imputed)	N
1907	chr5	173287762	173287763	rs875742	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	5q35.2		rs875742-G	0.594	7E-22		0.11	[0.09-0.13] % increase	Affymetrix [NR] (imputed)	N
1907	chr5	173287762	173287763	rs875742	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	5q35.2	NR	rs875742-A	0.405933	2E-114		0.051651556	[0.047-0.056] unit decrease	Affymetrix [93095623] (imputed)	N
1907	chr5	173287762	173287763	rs875742	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	5q35.2	NR	rs875742-A	0.405927	3E-96		0.047323994	[0.043-0.052] unit decrease	Affymetrix [93095623] (imputed)	N
1907	chr5	173287762	173287763	rs875742	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	5q35.2		rs875742-A	0.406054	3E-11		0.017096415	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1907	chr5	173287762	173287763	rs875742	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	5q35.2		rs875742-A	0.405995	3E-34		0.027471906	[0.023-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
1907	chr5	173287762	173287763	rs875742	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	5q35.2		rs875742-A	0.405933	5E-76		0.04203186	[0.038-0.046] unit decrease	Affymetrix [93095623] (imputed)	N
1907	chr5	173287762	173287763	rs875742	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	5q35.2		rs875742-A	0.405938	1E-136		0.05621509	[0.052-0.061] unit decrease	Affymetrix [93095623] (imputed)	N
1907	chr5	173287762	173287763	rs875742	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	5q35.2		rs875742-A	0.405932	2E-123		0.053435694	[0.049-0.058] unit decrease	Affymetrix [93095623] (imputed)	N
1907	chr5	173287762	173287763	rs875742	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q35.2	NR	rs875742-G	0.592478	3E-35				Affymetrix, Illumina [22063850] (imputed)	N
1907	chr5	173287762	173287763	rs875742	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	5q35.2	NR	rs875742-G	0.593295	1E-38		0.024857	[0.021-0.029] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
1907	chr5	173287762	173287763	rs875742	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	5q35.2		rs875742-?	NR	6E-32				NR [~ 8900000] (imputed)	N
1907	chr5	173287850	173287851	rs875741	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	5q35.2		rs875741-A	0.406011	6E-33		0.0282242	[0.024-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
1907	chr5	173287850	173287851	rs875741	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	5q35.2	NR	rs875741-G	0.594371	2E-10		0.012414	[0.0086-0.0162] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
1907	chr5	173287850	173287851	rs875741	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q35.2	NR	rs875741-A	0.383047	5E-59				Affymetrix, Illumina [24246363] (imputed)	N
1907	chr5	173287850	173287851	rs875741	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	5q35.2	NR	rs875741-A	0.405861	5E-50		0.027495	[0.024-0.031] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1907	chr5	173287850	173287851	rs875741	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	121,047 East Asian ancestry individuals	NA	5q35.2	NR	rs875741-G	0.729907	1E-12		0.032505	[0.024-0.041] SD units increase	Affymetrix, Illumina [16286195] (imputed)	N
1907	chr5	173287850	173287851	rs875741	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q35.2	NR	rs875741-A	0.380963	9E-51				Affymetrix, Illumina [20825802] (imputed)	N
1907	chr5	173287850	173287851	rs875741	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	5q35.2	NR	rs875741-A	0.405413	3E-45		0.02768	[0.024-0.032] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
1907	chr5	173287850	173287851	rs875741	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	119,629 East Asian ancestry individuals	NA	5q35.2	NR	rs875741-G	0.72991	7E-10		0.028287	[0.019-0.037] SD units increase	Affymetrix, Illumina [16286228] (imputed)	N
1907	chr5	173287850	173287851	rs875741	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	5q35.2		rs875741-?	NR	1E-45				NR [~ 8900000] (imputed)	N
1907	chr5	173287850	173287851	rs875741	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular volume	108,256 Japanese ancestry individuals	NA	5q35.2	LINC01485, CPEB4	rs875741-?	NR	3E-11		0.03172	[0.022-0.041] unit decrease novel	Illumina [6108953] (imputed)	N
1907	chr5	173287850	173287851	rs875741	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	5q35.2	intergenic	rs875741-A	0.4063	2E-48		0.05342549	[0.046-0.061] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1907	chr5	173287850	173287851	rs875741	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	5q35.2	intergenic	rs875741-A	0.4063	2E-41		0.04930335	[0.042-0.056] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1907	chr5	173287850	173287851	rs875741	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	5q35.2	intergenic	rs875741-A	0.4063	1E-38		0.04698588	[0.04-0.054] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1907	chr5	173287850	173287851	rs875741	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	5q35.2	intergenic	rs875741-A	0.4063	1E-58		0.05896936	[0.052-0.066] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1907	chr5	173287850	173287851	rs875741	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	5q35.2	intergenic	rs875741-A	0.4063	3E-54		0.05664142	[0.049-0.064] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1907	chr5	173288533	173288534	rs359431	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	5q35.2	NR	rs359431-T	0.56	2E-10		0.00691671	[0.0048-0.009] unit decrease	NR [9732723] (imputed)	N
1907	chr5	173288533	173288534	rs359431	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	5q35.2	NR	rs359431-T	0.56	3E-8		0.014198222	[0.0092-0.0192] unit decrease	NR [~ 10000000] (imputed)	N
1907	chr5	173289823	173289824	rs1806744	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	5q35.2	NR	rs1806744-C	0.1505	5E-8				NR [9056863] (imputed)	N
1907	chr5	173289939	173289940	rs359434	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	5q35.2	NR	rs359434-T	0.1553	2E-11				NR [9056863] (imputed)	N
1907	chr5	173290976	173290977	rs3849724	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	5q35.2	CPEB4	rs3849724-T	NR	3E-15		0.022308	[0.017-0.028] unit increase	Affymetrix [319769] (imputed)	N
1907	chr5	173290976	173290977	rs3849724	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	5q35.2	CPEB4	rs3849724-T	NR	9E-16		0.0227862	[0.017-0.028] unit increase	Affymetrix [319769] (imputed)	N
1907	chr5	173290976	173290977	rs3849724	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	5q35.2	CPEB4	rs3849724-T	NR	6E-15		0.022278	[0.017-0.028] unit increase	Affymetrix [321114] (imputed)	N
1907	chr5	173290976	173290977	rs3849724	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	5q35.2	CPEB4	rs3849724-T	NR	2E-17		0.0243926	[0.019-0.03] unit increase	Affymetrix [321169] (imputed)	N
1907	chr5	173290976	173290977	rs3849724	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	5q35.2	NR	rs3849724-G	NR	3E-6		0.012	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
1907	chr5	173290976	173290977	rs3849724	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	5q35.2	LINC01485, CPEB4	rs3849724-T	0.5	5E-10		0.015	[0.011-0.019] unit decrease	Illumina [6108953] (imputed)	N
1907	chr5	173291872	173291873	rs80079682	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	5q35.2		rs80079682-T	0.18	3E-10		6.29	z score increase	Affymetrix [9061022] (imputed)	N
1907	chr5	173297301	173297302	rs72810955	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	5q35.2		rs72810955-?	NR	8E-8				NR [~ 8900000] (imputed)	N
1907	chr5	173298225	173298226	rs6864880	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	5q35.2	NR	rs6864880-T	0.31	7E-11		0.0129	[0.0089-0.0169] unit decrease	NR [NR]	N
1907	chr5	173301426	173301427	rs3860770	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	5q35.2		rs3860770-A	NR	1E-22		0.0234	[0.019-0.028] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1907	chr5	173301981	173301982	rs6897617	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	5q35.2	CPEB4	rs6897617-A	NR	4E-31		0.0360604	[0.03-0.042] unit increase	Affymetrix [319769] (imputed)	N
1907	chr5	173301981	173301982	rs6897617	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	5q35.2	CPEB4	rs6897617-A	NR	2E-32		0.0368903	[0.031-0.043] unit increase	Affymetrix [319769] (imputed)	N
1907	chr5	173301981	173301982	rs6897617	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	5q35.2	CPEB4	rs6897617-A	NR	6E-34		0.0381336	[0.032-0.044] unit increase	Affymetrix [321169] (imputed)	N
1907	chr5	173301981	173301982	rs6897617	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	5q35.2		rs6897617-?	NR	3E-43				NR [~ 8900000] (imputed)	N
1907	chr5	173305431	173305432	rs359477	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	5q35.2	CPEB4	rs359477-C	NR	5E-14		0.0213022	[0.016-0.027] unit increase	Affymetrix [319769] (imputed)	N
1907	chr5	173305431	173305432	rs359477	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	5q35.2	CPEB4	rs359477-C	NR	1E-14		0.0217866	[0.016-0.027] unit increase	Affymetrix [319769] (imputed)	N
1907	chr5	173305431	173305432	rs359477	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	5q35.2	CPEB4	rs359477-C	NR	2E-13		0.0210054	[0.015-0.027] unit increase	Affymetrix [321114] (imputed)	N
1907	chr5	173305431	173305432	rs359477	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	5q35.2	CPEB4	rs359477-C	NR	1E-16		0.023586	[0.018-0.029] unit increase	Affymetrix [321169] (imputed)	N
1907	chr5	173305431	173305432	rs359477	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	5q35.2	NR	rs359477-C	0.455259	2E-12		0.01579933	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1907	chr5	173305431	173305432	rs359477	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	5q35.2	NR	rs359477-C	0.45524	2E-10		0.014309084	[0.0099-0.0187] unit increase	Affymetrix [93095623] (imputed)	N
1907	chr5	173305431	173305432	rs359477	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	5q35.2		rs359477-C	0.455284	1E-11		0.0153047	[0.011-0.019] unit increase	Affymetrix [93095623] (imputed)	N
1907	chr5	173305431	173305432	rs359477	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	5q35.2		rs359477-C	0.455263	1E-10		0.014233825	[0.0099-0.0186] unit increase	Affymetrix [93095623] (imputed)	N
1907	chr5	173305431	173305432	rs359477	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	5q35.2		rs359477-C	0.455298	4E-14		0.016861198	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1907	chr5	173305431	173305432	rs359477	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	5q35.2		rs359477-C	0.455292	2E-12		0.015725223	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1907	chr5	173311405	173311406	rs10037781	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	5q35.2		rs10037781-T	0.49162	9E-10		0.0165407	[0.011-0.022] unit increase	Illumina [13479924] (imputed)	N
1907	chr5	173312892	173312892	rs781460294	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	5q35.2	CPEB4	rs781460294-C	NR	6E-11		0.0226078	[0.016-0.029] unit increase	Affymetrix [323858] (imputed)	N
1907	chr5	173312892	173312892	rs781460294	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	5q35.2	CPEB4	rs781460294-C	NR	6E-11		0.0226399	[0.016-0.029] unit increase	Affymetrix [127266] (imputed)	N
1907	chr5	173312892	173312892	rs781460294	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	5q35.2	CPEB4	rs781460294-C	NR	2E-9		0.021434	[0.014-0.028] unit decrease	Affymetrix [323858] (imputed)	N
1907	chr5	173315865	173315866	rs359466	27659466	van der Harst P	2016-09-27	J Am Coll Cardiol	52 Genetic Loci Influencing Myocardial Mass.	QRS complex (Sokolow-Lyon)	up to 54,303 European ancestry individuals, up to 690 Orcadian (founder/genetic isolate) individuals	13,263 European ancestry individuals, 3,603 African American individuals, 4,619 Indian ancestry individuals	5q35.2	NR	rs359466-?	NR	3E-8	(EA)			Affymetrix, Illumina, Perlegen [2766983] (imputed)	N
1907	chr5	173318253	173318254	rs72810983	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	5q35.2	NR	rs72810983-A	0.69	2E-8	(EA)	1.0646069		Affymetrix, Illumina [~ 9000000] (imputed)	N
1907	chr5	173320814	173320815	rs7705502	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	5q35.2	CPEB4	rs7705502-A	0.3057	8E-7		0.0188	[0.011-0.026] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1907	chr5	173320814	173320815	rs7705502	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	5q35.2	CPEB4	rs7705502-A	0.3057	7E-7	(women)	0.0248	[0.015-0.035] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1907	chr5	173320814	173320815	rs7705502	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	5q35.2	CPEB4	rs7705502-A	0.3309	2E-7	(EA, men)	0.0269	[0.017-0.037] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1907	chr5	173320814	173320815	rs7705502	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	5q35.2	CPEB4	rs7705502-A	0.3278	5E-14	(EA)	0.0271	[0.02-0.034] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1907	chr5	173320814	173320815	rs7705502	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	5q35.2	CPEB4	rs7705502-A	0.3263	4E-7	(men)	0.0259	[0.016-0.036] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1907	chr5	173320814	173320815	rs7705502	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	5q35.2	CPEB4	rs7705502-A	0.324	2E-8	(EA, women)	0.0269	[0.017-0.036] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1907	chr5	173320814	173320815	rs7705502	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	5q35.2	CPEB4	rs7705502-A	0.3223	2E-13		0.0263	[0.019-0.033] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1907	chr5	173320814	173320815	rs7705502	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	5q35.2	CPEB4	rs7705502-A	0.3197	3E-8	(women)	0.0265	[0.017-0.036] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1907	chr5	173324970	173324971	rs55646464	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	5q35.2	CPEB4	rs55646464-G	0.699914	1E-8		0.012364	[0.0081-0.0166] unit decrease	Affymetrix [NR] (imputed)	N
1907	chr5	173324970	173324971	rs55646464	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	5q35.2	NR	rs55646464-G	0.699725	1E-11		0.0087216	[0.0063-0.0112] unit increase	Affymetrix [16582621] (imputed)	N
1907	chr5	173324970	173324971	rs55646464	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	5q35.2	NR	rs55646464-G	0.699725	4E-7		0.00672966	[0.0041-0.0094] unit increase	Affymetrix [16582614] (imputed)	N
1907	chr5	173324970	173324971	rs55646464	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	5q35.2		rs55646464-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1907	chr5	173326890	173326891	rs17694791	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	5q35.2		rs17694791-T	NR	3E-12		0.0157	[0.011-0.02] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1907	chr5	173329284	173329285	rs62376951	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	5q35.2		rs62376951-C	0.18	7E-15		7.79	z score increase	Affymetrix [9061022] (imputed)	N
1907	chr5	173334218	173334219	rs75049939	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	5q35.2	CPEB4	rs75049939-G	0.304302	8E-11		0.015589803	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1907	chr5	173334218	173334219	rs75049939	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	5q35.2	NR	rs75049939-G	0.304547	2E-10		0.013632	[0.0094-0.0178] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
1907	chr5	173334218	173334219	rs75049939	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	5q35.2	NR	rs75049939-T	0.695088	7E-18		0.00715618	[0.0054-0.0089] unit increase	Affymetrix [16582909] (imputed)	N
1907	chr5	173334218	173334219	rs75049939	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	5q35.2	NR	rs75049939-T	0.695088	8E-8		0.00497902	[0.003-0.007] unit increase	Affymetrix [16582965] (imputed)	N
1907	chr5	173334218	173334219	rs75049939	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	5q35.2		rs75049939-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1907	chr5	173334400	173334401	rs4867732	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	5q35.2		rs4867732-G	NR	4E-11		0.0175	[0.012-0.023] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1907	chr5	173334791	173334792	rs2594867	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	5q35.2	CPEB4	rs2594867-A	NR	3E-12		0.0198632	[0.014-0.025] unit decrease	Affymetrix [319769] (imputed)	N
1907	chr5	173334791	173334792	rs2594867	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	5q35.2	CPEB4	rs2594867-A	NR	9E-13		0.0203469	[0.015-0.026] unit decrease	Affymetrix [319769] (imputed)	N
1907	chr5	173334791	173334792	rs2594867	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	5q35.2	CPEB4	rs2594867-A	NR	1E-13		0.021223	[0.016-0.027] unit decrease	Affymetrix [321114] (imputed)	N
1907	chr5	173334791	173334792	rs2594867	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	5q35.2	CPEB4	rs2594867-A	NR	9E-15		0.0223133	[0.017-0.028] unit decrease	Affymetrix [321169] (imputed)	N
1907	chr5	173334791	173334792	rs2594867	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	5q35.2	NR	rs2594867-?	NR	7E-14				Affymetrix [~ 8270000] (imputed)	N
1907	chr5	173334791	173334792	rs2594867	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	5q35.2	NR	rs2594867-?	NR	7E-13				Affymetrix [~ 8270000] (imputed)	N
1907	chr5	173335923	173335925	rs34017767	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	5q35.2		rs34017767-C	NR	5E-14		0.0169	[0.013-0.021] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1907	chr5	173337852	173337853	rs17695092	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Crohn's disease	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls	5q35.2	CPEB4	rs17695092-T	0.703	5E-9		1.095	[1.055-1.136]	Affymetrix, Illumina [1230000] (imputed)	N
1907	chr5	173338611	173338612	rs17695127	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	5q35.2	NR	rs17695127-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
1907	chr5	173339530	173339531	rs112299234	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	5q35.2	CPEB4	rs112299234-C	0.302614	1E-11		0.018557321	[0.013-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1907	chr5	173348155	173348156	rs10516107	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	5q35.2	CPEB4	rs10516107-A	0.3058	9E-6				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1907	chr5	173348155	173348156	rs10516107	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	5q35.2	CPEB4	rs10516107-A	0.3058	4E-6	(women)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1907	chr5	173348155	173348156	rs10516107	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	5q35.2	CPEB4	rs10516107-A	0.3058	8E-6		0.017	[0.0096-0.0244] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1907	chr5	173348155	173348156	rs10516107	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	5q35.2	CPEB4	rs10516107-A	0.3058	2E-6	(women)	0.0234	[0.014-0.033] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1907	chr5	173348155	173348156	rs10516107	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex x age interaction (4df test)	up to 43,776 European ancestry men aged <50, up to 50,526 European ancestry women aged <50, up to 69,944 European ancestry men aged >50, up to 88,129 European ancestry women aged >50	NA	5q35.2	NR	rs10516107-A	0.326573038451688	2E-10				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1907	chr5	173348155	173348156	rs10516107	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	5q35.2	NR	rs10516107-A	0.326573038451688	3E-12		0.024094902	units increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1907	chr5	173348155	173348156	rs10516107	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	5q35.2	CPEB4	rs10516107-A	0.3259	8E-11	(EA)	0.0232	[0.016-0.03] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1907	chr5	173348155	173348156	rs10516107	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	5q35.2	CPEB4	rs10516107-A	0.3259	3E-10	(EA,women)	0.029	[0.02-0.038] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1907	chr5	173351860	173351861	rs12519998	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	5q35.2	CPEB4	rs12519998-G	NR	2E-10		0.0205477	[0.014-0.027] unit increase	Affymetrix [323858] (imputed)	N
1907	chr5	173351860	173351861	rs12519998	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	5q35.2	CPEB4	rs12519998-G	NR	1E-8		0.0174693	[0.011-0.024] unit increase	Affymetrix [323123] (imputed)	N
1907	chr5	173352762	173352763	rs1106693	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Emotional recognition	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	5q35.2	CPEB4	rs1106693-G	NR	3E-6		0.3203059	[0.17-0.47] unit decrease	NR [> 6200000] (imputed)	N
1907	chr5	173352762	173352763	rs1106693	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	5q35.2	CPEB4	rs1106693-G	0.039	2E-6	(Height z-score )	0.02	[NR] SD increase	Illumina [899892]	N
1907	chr5	173356751	173356752	rs72812818	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	5q35.2		rs72812818-C	NR	1E-17		0.0195	[0.015-0.024] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
1907	chr5	173356751	173356752	rs72812818	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	5q35.2	CPEB4	rs72812818-C	NR	2E-8		0.0189036	[0.012-0.025] unit decrease	Affymetrix [323123] (imputed)	N
1907	chr5	173358153	173358154	rs6864691	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	5q35.2		rs6864691-A	NR	1E-15		0.0143	[0.011-0.018] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
1907	chr5	173358153	173358154	rs6864691	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	5q35.2		rs6864691-?	NR	8E-18				NR [~ 8900000] (imputed)	N
1907	chr5	173358336	173358337	rs7705507	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	5q35.2		rs7705507-?	NR	3E-11				NR [~ 8900000] (imputed)	N
1907	chr5	173359330	173359331	rs17763373	22210626	Mead S	2011-12-30	Hum Mol Genet	Genome-wide association study in multiple human prion diseases suggests genetic risk factors additional to PRNP.	Prion diseases	1,281 European ancestry cases, 6,015 European ancestry controls, 290 Papua New Guinean ancestry cases, 286 Papua New Guinean ancestry controls	NA	5q35.2	NR	rs17763373-?	NR	7E-6		1.5106	[NR]	Illumina [NR] (imputed)	N
1907	chr5	173362457	173362458	rs6861681	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Waist-hip ratio and systolic blood pressure (pairwise)	365,450 European ancestry individuals, 11,333 East Asian, South Asian, Hispanic and African American ancestry individuals	NA	5q35.2	CPEB4	rs6861681-G	0.7127	3E-12				Affymetrix, Illumina [2331072] (imputed)	N
1907	chr5	173362457	173362458	rs6861681	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	5q35.2	CPEB4	rs6861681-G	0.69596	1E-9		0.0121868	[0.0082-0.0161] unit decrease	NR [13737936] (imputed)	N
1907	chr5	173362457	173362458	rs6861681	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	5q35.2	NR	rs6861681-A	0.3	3E-52		0.029	[0.025-0.033] unit increase	Affymetrix [2446094] (imputed)	N
1907	chr5	173362457	173362458	rs6861681	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	5q35.2	NR	rs6861681-A	0.3	5E-8				Affymetrix [2446094] (imputed)	N
1907	chr5	173362457	173362458	rs6861681	20935629	Heid IM	2010-10-10	Nat Genet	Meta-analysis identifies 13 new loci associated with waist-hip ratio and reveals sexual dimorphism in the genetic basis of fat distribution.	Waist-hip ratio	Up to 77,167 European ancestry individuals	Up to 113,636 European ancestry individuals	5q35.2	CPEB4	rs6861681-A	0.34	2E-9		0.02	[NR] unit increase	Affymetrix, Illumina, Perlegen [up to 2850269] (imputed)	N
1907	chr5	173363666	173363667	rs17076724	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	5q35.2	CPEB4	rs17076724-T	0.4244	8E-16		0.02888753	[0.022-0.036] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1907	chr5	173363888	173363889	rs17076726	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q35.2	NR	rs17076726-T	0.390515	1E-15				Affymetrix, Illumina [24332387] (imputed)	N
1907	chr5	173363888	173363889	rs17076726	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	5q35.2	CPEB4	rs17076726-T	0.4237	1E-9		0.0218207	[0.015-0.029] unit increase	Affymetrix [~ 2500000] (imputed)	N
1907	chr5	173363888	173363889	rs17076726	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	5q35.2	CPEB4	rs17076726-T	0.4236	2E-14		0.02763309	[0.021-0.035] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1907	chr5	173366756	173366757	rs11292869	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	5q35.2	CPEB4	rs11292869-C	0.435342	2E-15		0.017937467	[0.014-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1907	chr5	173373947	173373948	rs56163845	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	5q35.2	NR	rs56163845-?	NR	9E-12	(EA)			Affymetrix, Illumina [~ 9000000] (imputed)	N
1907	chr5	173377635	173377636	rs72812846	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	5q35.2	CPEB4	rs72812846-T	NR	2E-6		0.0294346	[0.017-0.041] unit increase	Illumina [13520550] (imputed)	N
1907	chr5	173377635	173377636	rs72812846	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Diastolic blood pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	5q35.2	CPEB4	rs72812846-A	0.28	2E-11		0.209	[0.15-0.27] unit decrease	Affymetrix [~ 9800000] (imputed)	N
1907	chr5	173377635	173377636	rs72812846	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	5q35.2	CPEB4	rs72812846-T		9E-6		0.198	unit increase	Affymetrix [at least 2696785] (imputed)	N
1907	chr5	173377635	173377636	rs72812846	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	5q35.2	CPEB4	rs72812846-T		1E-13		0.202	unit increase	Affymetrix [at least 2696785] (imputed)	N
1907	chr5	173378316	173378316	rs77822827	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	5q35.2		rs77822827-?	NR	1E-9		0.0131409	[0.0087-0.0176] unit decrease	Affymetrix [20259828] (imputed)	N
1907	chr5	173380345	173380346	rs969518	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	315,284 European ancestry male individuals	NA	5q35.2	NR	rs969518-T	0.5775	8E-22		0.0167	[0.013-0.02] unit increase	NR [~ 27400000] (imputed)	N
1907	chr5	173385693	173385693	rs61679086	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	5q35.2	CPEB4	rs61679086-TA	NR	1E-28		0.0344883	[0.028-0.041] unit increase	Affymetrix [321114] (imputed)	N
1907	chr5	173387508	173387509	rs72812861	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	5q35.2	CPEB4	rs72812861-?	NR	1E-8	(subset analysis)			Illumina [130052]	N
1907	chr5	173388957	173388957	rs397770642	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	5q35.2		rs397770642-CA	NR	4E-11		0.0178	[0.013-0.023] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
1907	chr5	173390693	173390694	rs7703428	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	5q35.2	CPEB4	rs7703428-T	NR	1E-14		0.0219778	[0.016-0.028] unit increase	Affymetrix [319769] (imputed)	N
1907	chr5	173390693	173390694	rs7703428	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	5q35.2	CPEB4	rs7703428-T	NR	4E-15		0.0223568	[0.017-0.028] unit increase	Affymetrix [319769] (imputed)	N
1907	chr5	173390693	173390694	rs7703428	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	5q35.2	CPEB4	rs7703428-T	NR	2E-10		0.0181708	[0.013-0.024] unit increase	Affymetrix [321114] (imputed)	N
1907	chr5	173390693	173390694	rs7703428	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	5q35.2	CPEB4	rs7703428-T	NR	3E-12		0.0200177	[0.014-0.026] unit increase	Affymetrix [321169] (imputed)	N
1907	chr5	173392314	173392315	rs6890591	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	5q35.2	CPEB4	rs6890591-A	NR	6E-19		0.0256983	[0.02-0.031] unit increase	Affymetrix [319769] (imputed)	N
1907	chr5	173392314	173392315	rs6890591	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	5q35.2	CPEB4	rs6890591-A	NR	5E-20		0.0265015	[0.021-0.032] unit increase	Affymetrix [319769] (imputed)	N
1907	chr5	173392314	173392315	rs6890591	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	5q35.2	CPEB4	rs6890591-A	NR	8E-22		0.0280146	[0.022-0.034] unit increase	Affymetrix [321169] (imputed)	N
1907	chr5	173392397	173392398	rs10054063	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	5q35.2		rs10054063-?	NR	1E-14				NR [~ 8900000] (imputed)	N
1907	chr5	173392397	173392398	rs10054063	30289880	Qi G	2018-10-05	PLoS Genet	Heritability informed power optimization (HIPO) leads to enhanced detection of genetic associations across multiple traits.	Lipid traits (pleiotropy) (HIPO component 1)	188,577 European ancestry individuals	NA	5q35.2	CPEB4	rs10054063-?	NR	4E-8				NR [1800000]	N
1907	chr5	173392397	173392398	rs10054063	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	5q35.2	NR	rs10054063-A	0.6208	2E-39		0.0268	[0.023-0.031] unit decrease	NR [~ 27400000] (imputed)	N
1907	chr5	173392637	173392638	rs67623241	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	5q35.2	CPEB4	rs67623241-G	NR	9E-9		0.0184415	[0.012-0.025] unit increase	Affymetrix [323858] (imputed)	N
1907	chr5	173392637	173392638	rs67623241	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	5q35.2	CPEB4	rs67623241-G	NR	1E-8		0.0183622	[0.012-0.025] unit increase	Affymetrix [127266] (imputed)	N
1907	chr5	173392637	173392638	rs67623241	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	5q35.2	CPEB4	rs67623241-G	NR	1E-9		0.0200551	[0.014-0.026] unit decrease	Affymetrix [323858] (imputed)	N
1907	chr5	173393110	173393111	rs28439930	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	5q35.2	NKX2-5	rs28439930-G	0.517	2E-11		1.05	[1.03-1.06]	Illumina [34740186] (imputed)	N
1907	chr5	173393957	173393958	rs10073154	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	5q35.2	CPEB4	rs10073154-G	NR	2E-13		0.0209681	[0.015-0.027] unit increase	Affymetrix [321114] (imputed)	N
1907	chr5	173401342	173401343	rs1994236	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	5q35.2	C5orf47	rs1994236-G	NR	3E-8		0.0159661	[0.01-0.022] unit decrease	Affymetrix [321114] (imputed)	N
1907	chr5	173401342	173401343	rs1994236	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	5q35.2	C5orf47	rs1994236-G	NR	1E-9		0.0174695	[0.012-0.023] unit decrease	Affymetrix [321169] (imputed)	N
1907	chr5	173401463	173401464	rs60570573	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	5q35.2	C5orf47	rs60570573-C	NR	1E-8		0.0164955	[0.011-0.022] unit decrease	Affymetrix [319769] (imputed)	N
1907	chr5	173401463	173401464	rs60570573	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	5q35.2	C5orf47	rs60570573-C	NR	6E-9		0.0167104	[0.011-0.022] unit decrease	Affymetrix [319769] (imputed)	N
1907	chr5	173401463	173401464	rs60570573	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	5q35.2	C5orf47	rs60570573-C	NR	3E-8		0.0160886	[0.01-0.022] unit decrease	Affymetrix [321114] (imputed)	N
1907	chr5	173401463	173401464	rs60570573	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	5q35.2	C5orf47	rs60570573-C	NR	2E-9		0.0175661	[0.012-0.023] unit decrease	Affymetrix [321169] (imputed)	N
1908	chr5	173409712	173409713	rs66736981	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Age at menopause	approximately 143,000 European ancestry individuals	NA	5q35.2		rs66736981-?	NR	1E-15				NR [~ 8900000] (imputed)	N
1908	chr5	173409952	173409953	rs12518748	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	5q35.2	C5orf47	rs12518748-A	NR	2E-8		0.0173197	[0.011-0.023] unit decrease	Affymetrix [321114] (imputed)	N
1908	chr5	173409952	173409953	rs12518748	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	5q35.2	C5orf47	rs12518748-A	NR	3E-9		0.0184591	[0.012-0.025] unit decrease	Affymetrix [321169] (imputed)	N
1908	chr5	173413035	173413036	rs7727165	31609978	Huang L	2019-10-14	PLoS Genet	Genetic factors define CPO and CLO subtypes of nonsyndromicorofacial cleft.	Nonsyndromic cleft palate	930 Southern Han Chinese ancestry cases, 5,048 Southern Han Chinese ancestry controls	1,141 Han Chinese ancestry cases, 5,097 Han Chinese ancestry controls	5q35.2	CPEB4, C5orf47	rs7727165-A	0.026	6E-6		1.583	NR	Illumina [at least 870261] (imputed)	N
1908	chr5	173413035	173413036	rs7727165	31609978	Huang L	2019-10-14	PLoS Genet	Genetic factors define CPO and CLO subtypes of nonsyndromicorofacial cleft.	Nonsyndromic cleft lip	945 Southern Han Chinese ancestry cases, 5,048 Southern Han Chinese ancestry controls	1,273 Han Chinese ancestry cases, 5,097 Han Chinese ancestry controls	5q35.2	CPEB4, C5orf47	rs7727165-A	0.046	4E-6		1.362	NR	Illumina [at least 870261] (imputed)	N
1909	chr5	173539587	173539588	rs12518401	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	5q35.2	HMP19, MSX2	rs12518401-G	0.6155999999999999	2E-10		1.0238807		Affymetrix [11880941] (imputed)	N
1909	chr5	173540440	173540441	rs35484589	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	5q35.2	NSG2	rs35484589-A	NR	6E-9		0.0167216	[0.011-0.022] unit increase	Affymetrix [319769] (imputed)	N
1909	chr5	173540440	173540441	rs35484589	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	5q35.2	NSG2	rs35484589-A	NR	2E-9		0.0172334	[0.012-0.023] unit increase	Affymetrix [319769] (imputed)	N
1909	chr5	173540966	173540967	rs7734592	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	5q35.2	NR	rs7734592-?	NR	4E-10				Affymetrix [~ 8270000] (imputed)	N
1909	chr5	173616257	173616258	rs12656164	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5q35.2	CPEB4	rs12656164-?	NR	9E-6	(isoleucine)	1.2172161	[0.68-1.75] unit increase	Affymetrix [at least 2500000] (imputed)	N
1909	chr5	173625153	173625154	rs6863418	23648065	Low SK	2013-05-04	Cancer Sci	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (gemcitabine)	80 Japanese ancestry cases, 226 Japanese ancestry controls	NA	5q35.2	HMP19	rs6863418-A	0.055	7E-6	(Dominant model)	3.623	[2.042-6.429]	Illumina [733202]	N
1909	chr5	173648437	173648438	rs10475598	21130836	Luciano M	2010-12-03	Biol Psychol	Whole genome association scan for genetic polymorphisms influencing information processing speed.	Information processing speed	Up to 4,039 European ancestry individuals	NA	5q35.2	CTC-430J12.2	rs10475598-T	0.32	8E-7	(speed factor)	0.15	[0.09-0.21] unit increase	Illumina [~ 610000]	N
1910	chr5	173695777	173695778	rs11952171	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Subcutaneous adipose tissue	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	5q35.2	HMP19	rs11952171-A	0.18	7E-6	(women)			Affymetrix, Illumina [2500000] (imputed)	N
1910	chr5	173707234	173707235	rs6878584	25117820	Schneider BP	2014-08-12	Br J Cancer	Genetic variant predicts bevacizumab-induced hypertension in ECOG-5103 and ECOG-2100.	Response to chemotherapy in breast cancer hypertensive cases (cumulative dose) (bevacizumab)	255 European ancestry cases, 387 European ancestry controls		5q35.2	intergenic	rs6878584-?	NR	7E-6		2.27	[NR]	Illumina [up to 810372] (imputed)	N
1910	chr5	173710197	173710198	rs138762279	31413261	Deelen J	2019-08-14	Nat Commun	A meta-analysis of genome-wide association studies identifies multiple longevity genes.	Longevity (age >99th survival percentile)	3,484 European ancestry cases, 2,178 East Asian ancestry cases, 25,483 European ancestry controls, 2,299 East Asian ancestry controls	NA	5q35.2	intergenic	rs138762279-A	0.84	2E-7		1.2658228	[1.16-1.39]	Illumina [up to 9449311] (imputed)	N
1910	chr5	173720715	173720716	rs2964044	28322283	Chibnik LB	2017-03-21	Mol Psychiatry	Susceptibility to neurofibrillary tangles: role of the PTPRD locus and limited pleiotropy with other neuropathologies.	Neurofibrillary tangles	909 European ancestry individuals	369 individuals	5q35.2	NR	rs2964044-A	0.89	6E-6	(EA)	0.13	[0.08-0.19] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1910	chr5	173733557	173733558	rs77093473	30014611	Weiss RB	2018-07-16	Ann Neurol	Long-range genomic regulators of THBS1 and LTBP4 modify disease severity in Duchenne muscular dystrophy.	Age at loss of ambulation in Duchenne muscular dystrophy	243 European ancestry cases, 10 cases	NA	5q35.2	NR	rs77093473-?	NR	5E-6				Illumina [1735619]	N
1910	chr5	173749948	173749949	rs76446439	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q35.2	NR	rs76446439-T	0.0122	1E-8	(TTC36)	0.0886	NR unit increase	Illumina [1671387] (imputed)	N
1910	chr5	173754219	173754220	rs34490683	30694715	Sakornsakolpat P	2019-01-29	Am J Respir Cell Mol Biol	Genome-Wide Association Analysis of Single Breath Diffusing Capacity of Carbon Monoxide (DLCO).	Diffusing capacity of carbon monoxide	2,584 European ancestry individuals with chronic obstructive pulmonary disease, 3,002 European ancestry healthy individuals, 343 African American individuals with chronic obstructive pulmonary disease, 1,006 African American healthy individuals	NA	5q35.2	NSG2	rs34490683-A	0.07	2E-6	(African American)	0.4	0.24-0.57 unit increase	Illumina [NR] (imputed)	N
1910	chr5	173763566	173763567	rs2964102	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Bacteroides)	1,068 Japanese ancestry individuals	NA	5q35.2	RP11-267A15.1	rs2964102-G	0.24	8E-6		0.0441	[0.025-0.063] unit decrease	Illumina [6380737] (imputed)	N
1910	chr5	173777519	173777520	rs12659144	23502783	Weinhold N	2013-03-17	Nat Genet	The CCND1 c.870G>A polymorphism is a risk factor for t(11;14)(q13;q32) multiple myeloma.	Multiple myeloma (hyperdiploidy)	up to 1,660 European ancestry cases, 7,306 European ancestry controls		5q35.2	NR	rs12659144-G	0.12	3E-6	(HD vs. non-HD)	1.67	[1.35-2.07]	Illumina [414804]	N
1910	chr5	173779208	173779209	rs4868384	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	5q35.2	LINC01411	rs4868384-T	0.47	3E-13		0.47	[0.35-0.59] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1910	chr5	173779208	173779209	rs4868384	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	5q35.2	LINC01411	rs4868384-T	0.4635	5E-12		0.4594	[0.33-0.59] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1911	chr5	173806073	173806074	rs2936953	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5q35.2	MSX2	rs2936953-?	NR	9E-6	(dimethylglycine)	0.16321583	[0.091-0.235] unit increase	Affymetrix [at least 2500000] (imputed)	N
1911	chr5	173830621	173830622	rs2964049	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	5q35.2	NR	rs2964049-G	0.371667	1E-8		0.0181416	[0.012-0.024] unit decrease	NR [19129689] (imputed)	N
1911	chr5	173830621	173830622	rs2964049	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	5q35.2	NSG2	rs2964049-?	NR	1E-9		1.0505306	NR	Affymetrix [9154080] (imputed)	N
1911	chr5	173831109	173831110	rs2936938	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	5q35.2		rs2936938-?	NR	7E-17				NR [~ 8900000] (imputed)	N
1911	chr5	173862443	173862444	rs34531324	28090653	Liu Y	2017-01-16	Clin Pharmacol Ther	Genome-Wide Study Links PNPLA3 Variant With Elevated Hepatic Transaminase After Acute Lymphoblastic Leukemia Therapy.	Alanine aminotransferase (ALT) levels after remission induction therapy in actute lymphoblastic leukemia (ALL)	up to 488 European ancestry cases, up to 111 African American cases, up to 60 Hispanic cases, up to 56 other ancestry cases	NA	5q35.2	MSX2	rs34531324-T		9E-7	(EA)	1.29	[1.03-1.61]	Affymetrix, Illumina [NR] (imputed)	N
1911	chr5	173872985	173872986	rs794728	25649181	Noordam R	2015-01-20	J Psychiatr Res	Identifying genetic loci associated with antidepressant drug response with drug-gene interaction models in a population-based study.	Depressive symptoms (SSRI exposure interaction)	175 users,  6,268 nonusers	NA	5q35.2	MSX2	rs794728-T	0.48	5E-6		0.42	[0.26-0.58] unit decrease	Illumina [NR] (imputed)	N
1911	chr5	173875085	173875086	rs73328509	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Prepulse inhibition of the startle response	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	5q35.2	intergenic	rs73328509-T	NR	8E-6		23.263176	[13.14-33.39] unit decrease	Illumina [> 6200000] (imputed)	N
1911	chr5	173880642	173880643	rs171371	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5q35.2	HMP19	rs171371-?	NR	2E-6	(quinolinic acid)	0.23037651	[0.14-0.33] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1911	chr5	173914941	173914942	rs59492816	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	5q35.2	NR	rs59492816-?	NR	7E-6				Illumina [at least 7383741] (imputed)	N
1912	chr5	173935379	173935380	rs114492924	31490055	Sun J	2019-09-06	Can J Surg	A genome-wide association study of cocaine use disorder accounting for phenotypic heterogeneity and gene-environment interaction	Cocaine use disorder x change in residence interaction	2,070 African American individuals, 1,570 European ancestry individuals	918 African American individuals, 1,382 European ancestry individuals	5q35.2	LINC01411	rs114492924-?	NR	2E-10	(subtype 5, AA)	6.353	[NR] z score increase	Illumina [up to 47104916] (imputed)	N
1912	chr5	173935379	173935380	rs114492924	31490055	Sun J	2019-09-06	Can J Surg	A genome-wide association study of cocaine use disorder accounting for phenotypic heterogeneity and gene-environment interaction	Cocaine use disorder	2,070 African American individuals, 1,570 European ancestry individuals	918 African American individuals, 1,382 European ancestry individuals	5q35.2	LINC01411	rs114492924-?		3E-6	(subtype 5, AA)	4.641	[NR] z score increase	Illumina [up to 47104916] (imputed)	N
1912	chr5	173962041	173962042	rs4867766	26089329	Carty CL	2015-06-18	Stroke	Meta-Analysis of Genome-Wide Association Studies Identifies Genetic Risk Factors for Stroke in African Americans.	Stroke	up to 1,592 African American cases, up to 13,154 African American controls	NA	5q35.2	MSX2, NKX2-5	rs4867766-A	0.08	5E-7		0.41	[0.25-0.57] unit increase	Affymetrix, Illumina [up to 2600000] (imputed)	N
1912	chr5	173976114	173976115	rs6876712	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Red vs. brown/black hair color	15,731 British ancestry red hair individuals, 283,920 British ancestry brown or black hair individuals	NA	5q35.2	MSX2	rs6876712-T	0.257	5E-19		1.123	NR	Affymetrix [9154080] (imputed)	N
1912	chr5	174014113	174014114	rs145848414	33074286	Kunkle BW	2020-10-19	JAMA Neurol	Novel Alzheimer Disease Risk Loci and Pathways in African American Individuals Using the African Genome Resources Panel: A Meta-analysis.	Alzheimer's disease	2,784 African American cases, 5,222 African American controls	NA	5q35.2	NSG2, MSX2	rs145848414-?		2E-6	(model 1)	1.78	[1.41-2.25]	Illumina [29610185] (imputed)	N
1912	chr5	174014113	174014114	rs145848414	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		5q35.2	Intergenic	rs145848414-A	0.04	3E-6	(liability model)	0.21	[0.13-0.29] unit increase	NR [19725427] (imputed)	N
1912	chr5	174014113	174014114	rs145848414	23571587	Reitz C	2013-04-10	JAMA	Variants in the ATP-binding cassette transporter (ABCA7), apolipoprotein E ?4,and the risk of late-onset Alzheimer disease in African Americans.	Alzheimer's disease (late onset)	1,968 African American cases, 3,928 African American controls		5q35.2	intergenic	rs145848414-A	0.04	7E-8		2.29	[1.69-3.09]	Illumina [17332474] (imputed)	N
1912	chr5	174036232	174036233	rs10866682	26256467	Wojczynski MK	2015-07-03	Metabolism	Genome-wide association study of triglyceride response to a high-fat meal among participants of the NHLBI Genetics of Lipid Lowering Drugs and Diet Network (GOLDN).	Postprandial triglyceride response to high fat diet meal	872 European ancestry individuals	843 Old Order Amish individuals	5q35.2	intergenic	rs10866682-C	0.1052	5E-7	(Uptake slope)	0.4323	[0.26-0.6] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1912	chr5	174036232	174036233	rs10866682	26256467	Wojczynski MK	2015-07-03	Metabolism	Genome-wide association study of triglyceride response to a high-fat meal among participants of the NHLBI Genetics of Lipid Lowering Drugs and Diet Network (GOLDN).	Postprandial triglyceride response to high fat diet meal	872 European ancestry individuals	843 Old Order Amish individuals	5q35.2	intergenic	rs10866682-C	0.1051	6E-7	(AUI)	0.4356	[0.27-0.61] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1912	chr5	174045906	174045907	rs11743466	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	5q35.2		rs11743466-G	NR	4E-10		0.0145	[0.01-0.019] unit increase	Affymetrix, Illumina [20528270] (imputed)	N
1912	chr5	174045906	174045907	rs11743466	34130359	Curtis SW	2021-06-15	Genet Epidemiol	FAT4 identified as a potential modifier of orofacial cleft laterality.	Left unilateral cleft lip and palate	98 Asian ancestry cases, 199 European ancestry cases, 340 Hispanic cases, 1 case, 1,626 controls	NA	5q35.2	NR	rs11743466-?		4E-6		0.69	[0.59-0.80]	Illumina [539473] (imputed)	N
1912	chr5	174045906	174045907	rs11743466	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	5q35.2	NR	rs11743466-G	NR	4E-10		0.0163	[0.011-0.021] unit increase	Affymetrix [9000000] (imputed)	N
1912	chr5	174057804	174057805	rs377692678	34214102	Sarnowski C	2021-07-02	PLoS One	Identification of novel and rare variants associated with handgrip strength using whole genome sequence data from the NHLBI Trans-Omics in Precision Medicine (TOPMed) Program.	Hand grip strength	3145 African American or Afro-Caribbean individuals	NA	5q35.2		rs377692678-A	0.003	4E-6		7.63	kg decrease	NR [638486]	N
1912	chr5	174057804	174057805	rs377692678	34214102	Sarnowski C	2021-07-02	PLoS One	Identification of novel and rare variants associated with handgrip strength using whole genome sequence data from the NHLBI Trans-Omics in Precision Medicine (TOPMed) Program.	Hand grip strength	13,552 European, African American or Afro-Caribbean, Hispanic or Latin American, Asian, Native American, Other ancestry individuals	NA	5q35.2		rs377692678-A	8.0E-4	8E-9		8.66	kg decrease	NR [638486]	N
1913	chr5	174069667	174069668	rs11749255	30237584	El Rouby N	2018-09-20	Pharmacogenomics J	Genome-wide association analysis of common genetic variants of resistant hypertension.	Resistant hypertension	297 European ancestry cases, 226 Hispanic cases, 623 European ancestry controls, 633 Hispanic controls	1,946 European ancestry cases, 471 European ancestry controls	5q35.2	MSX2	rs11749255-A	0.69	3E-7		1.098901	[NR]	Illumina [NR]	N
1913	chr5	174069667	174069668	rs11749255	30237584	El Rouby N	2018-09-20	Pharmacogenomics J	Genome-wide association analysis of common genetic variants of resistant hypertension.	Resistant hypertension	226 European ancestry cases, 143 Hispanic cases, 431 European ancestry controls, 394 Hispanic controls	71 European ancestry cases, 83 Hispanic cases, 192 European ancestry controls, 239 Hispanic controls	5q35.2	MSX2	rs11749255-A		4E-8		1.6	[1.30-1.90]	Illumina [696317]	N
1913	chr5	174089128	174089129	rs6897392	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5q35.2	HMP19	rs6897392-?	NR	7E-6	(TAG 58:8)	0.9510781	[0.54-1.37] unit increase	Affymetrix [at least 2500000] (imputed)	N
1913	chr5	174132753	174132754	rs10061074	26993346	Schott JM	2016-03-15	Alzheimers Dement	Genetic risk factors for the posterior cortical atrophy variant of Alzheimer's disease.	Posterior cortical atrophy and Alzheimer's disease	293 cases, 10,547 healthy controls	NA	5q35.2	Intergenic	rs10061074-?	NR	7E-6		2.73556	[1.72367-4.34148]	Illumina [~ 5900000] (imputed)	N
1913	chr5	174140050	174140051	rs192597222	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial lung cancer	1,993 European ancestry cases, 33,960 European ancestry controls	NA	5q35.2	NR	rs192597222-T	0.003	1E-6		7.73	[3.36-17.77]	Illumina [9327222] (imputed)	N
1913	chr5	174156167	174156168	rs4242182	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	5q35.2		rs4242182-?	NR	5E-24				NR [~ 8900000] (imputed)	N
1913	chr5	174156167	174156168	rs4242182	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	5q35.2	MSX2	rs4242182-T	0.09754	4E-13		1.095	NR	Affymetrix [9154080] (imputed)	N
1913	chr5	174157095	174157096	rs2381939	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	5q35.2		rs2381939-A	0.17	2E-13		7.35	z score increase	Affymetrix [9061022] (imputed)	N
1913	chr5	174157095	174157096	rs2381939	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	5q35.2		rs2381939-A	0.17	5E-11		6.56	z score increase	Affymetrix [9061022] (imputed)	N
1913	chr5	174157095	174157096	rs2381939	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	5q35.2	NR	rs2381939-A	0.1375	5E-12				NR [9056863] (imputed)	N
1913	chr5	174160112	174160113	rs4868444	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Chin dimples	58,032 European ancestry cases, 13,457 European ancestry controls	NA	5q35.2	MSX2, DRD1	rs4868444-?	NR	7E-14		1.187	[1.134-1.242]	Illumina [13537761] (imputed)	N
1913	chr5	174182931	174182932	rs28450080	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	5q35.2	CTD-2532K18.1, MIR4634, MSX2, HIGD1AP3	rs28450080-T	NR	5E-6	(sleep efficiency)	4.226	[2.41-6.04] unit decrease	Affymetrix [7141204] (imputed)	N
1913	chr5	174184715	174184716	rs114565616	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mumps	31,227 European ancestry cases, 54,153 European ancestry controls	NA	5q35.2	NR	rs114565616-?	NR	4E-6		0.3073	[0.18-0.44] unit increase	Illumina [at least 560000] (imputed)	N
1913	chr5	174186745	174186746	rs7723418	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q35.2	NR	rs7723418-A	0.02091	1E-8	(RPL17-C18orf32)	0.03546	NR unit increase	Illumina [1671387] (imputed)	N
1913	chr5	174191464	174191465	rs6892003	28207573	Backman JD	2017-04-01	Pharmacogenet Genomics	Genome-wide analysis of clopidogrel active metabolite levels identifies novel variants that influence antiplatelet response.	Clopidogrel active metabolite levels	513 Amish individuals	NA	5q35.2	Intergenic	rs6892003-A	0.71	1E-6		3.27	[NR] unit decrease	Affymetrix [7884700] (imputed)	N
1914	chr5	174194803	174194804	rs11739656	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	5q35.2	CTD-2532K18.1, MIR4634, MSX2, HIGD1AP3	rs11739656-T	NR	1E-6	(sleep duration)	0.3246	[0.19-0.45] unit decrease	Affymetrix [7141204] (imputed)	N
1914	chr5	174219999	174220000	rs35751312	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Short-term memory (digit-span task)	2,591 European ancestry individuals	NA	5q35.2	CTD-2532K18.1	rs35751312-T	0.72595	4E-7		0.164604	[0.1-0.23] unit decrease	Illumina [6952813] (imputed)	N
1914	chr5	174219999	174220000	rs35751312	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Reading ability (multivariate)	up to 3,468 European ancestry individuals	NA	5q35.2	NR	rs35751312-?		3E-6				Illumina [up to 6969139] (imputed)	N
1914	chr5	174223233	174223234	rs12660057	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	5q35.2	MIR4634	rs12660057-?	NR	7E-10	(M_HDL_L)	0.04790653	NR unit decrease	Illumina [609262]	N
1914	chr5	174223233	174223234	rs12660057	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	5q35.2	MIR4634	rs12660057-?	NR	5E-6	(M_HDL_L)	0.06755765	NR unit decrease	Illumina [609262]	N
1914	chr5	174238892	174238893	rs79581935	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Systolic blood pressure	136,597 Japanese ancestry individuals	NA	5q35.2	MIR4634, FLJ16171	rs79581935-?	NR	2E-8		0.04981	[0.032-0.067] unit decrease	Illumina [6108953] (imputed)	N
1914	chr5	174238892	174238893	rs79581935	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean arterial pressure	136,482 Japanese ancestry individuals	NA	5q35.2	MIR4634, FLJ16171	rs79581935-?	NR	5E-8		0.04876	[0.031-0.066] unit decrease novel	Illumina [6108953] (imputed)	N
1914	chr5	174241630	174241631	rs114653914	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	5q35.2	CTD-2532K18.1	rs114653914-T	0.0045	4E-6		0.2808	[0.16-0.4] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1914	chr5	174310053	174310054	rs116423144	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD127 on CD28+ CD45RA- CD8+ T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	5q35.2		rs116423144-A	0.00814	1E-8		0.8507	[0.56-1.14] unit increase	Illumina [17954496] (imputed)	N
1914	chr5	174321112	174321113	rs77655618	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Large artery stroke	350 Indian ancestry cases, 2,154 Indian ancestry controls	NA	5q35.2		rs77655618-?	NR	8E-6		1.1775416	[1.09604906001309-1.26509324361224]	Illumina [up to 7827597] (imputed)	N
1915	chr5	174380677	174380678	rs17064169	29594489	Apewokin S	2018-03-28	Support Care Cancer	Host genetic susceptibility to Clostridium difficile infections in patients undergoing autologous stem cell transplantation: a genome-wide association study.	Clostridium difficile infection in multiple myeloma	57 European ancestry cases, 589 European ancestry controls	NA	5q35.2	NR	rs17064169-?		3E-6				Illumina [892589]	N
1915	chr5	174388031	174388032	rs79793963	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in never smokers	2,355 European ancestry cases,  7,504 European ancestry controls	NA	5q35.2	FLJ16171	rs79793963-G	0.033921972	2E-6		1.6318891	[1.334761481-1.9951595]	Illumina [10439017] (imputed)	N
1915	chr5	174393317	174393318	rs186784089	33766948	Zhu Z	2021-03-25	Eur Respir J	A large-scale genome-wide association analysis of lung function in the Chinese population identifies novel loci and highlights shared genetic etiology with obesity.	Lung function (FEV1/FVC)	100,285 Chinese ancestry individuals	NA	5q35.2		rs186784089-G	0.99	5E-8		0.12	[0.077-0.163] unit increase	Affymetrix [NR] (imputed)	N
1915	chr5	174429247	174429248	rs7728402	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	5q35.2	Intergenic	rs7728402-A	0.7664	3E-8	(MTAG)	0.0117	[0.0076-0.0158] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1915	chr5	174429247	174429248	rs7728402	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	5q35.2	Intergenic	rs7728402-A	0.7658	6E-10	(MTAG)	0.0122	[0.0083-0.0161] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1916	chr5	174481013	174481014	rs1875968	29594489	Apewokin S	2018-03-28	Support Care Cancer	Host genetic susceptibility to Clostridium difficile infections in patients undergoing autologous stem cell transplantation: a genome-wide association study.	Clostridium difficile infection in multiple myeloma	57 European ancestry cases, 589 European ancestry controls	NA	5q35.2	FLJ16171	rs1875968-A	NR	9E-9				Illumina [892589]	N
1916	chr5	174586308	174586309	rs4868487	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5q35.2	SFXN1	rs4868487-?	NR	3E-6	(cotinine)	0.16974168	[0.099-0.24] unit increase	Affymetrix [at least 2500000] (imputed)	N
1917	chr5	174611339	174611340	rs4336372	23555300	Cui J	2013-03-28	PLoS Genet	Genome-wide association study and gene expression analysis identifies CD84 as a predictor of response to etanercept therapy in rheumatoid arthritis.	Response to anti-TNF therapy in rheumatoid arthritis	Up to 2,706 European ancestry cases	NA	5q35.2	NR	rs4336372-C	0.34	3E-6	(infliximab, delta-DAS analysis)	0.34	[NR] unit decrease	Affymetrix, Illumina [~ 2000000] (imputed)	N
1917	chr5	174611339	174611340	rs4336372	23555300	Cui J	2013-03-28	PLoS Genet	Genome-wide association study and gene expression analysis identifies CD84 as a predictor of response to etanercept therapy in rheumatoid arthritis.	Response to anti-TNF therapy in rheumatoid arthritis	Up to 2,706 European ancestry cases	NA	5q35.2	NA	rs4336372-C	0.34	1E-6	(infliximab, EULAR response analysis)	0.65	[NR] unit decrease	Affymetrix, Illumina [~ 2000000] (imputed)	N
1917	chr5	174637801	174637802	rs17808848	30898391	Lawrenson K	2019-03-19	Gynecol Oncol	Genome-wide association studies identify susceptibility loci for epithelial ovarian cancer in east Asian women.	Epithelial ovarian cancer	3,238 East Asian ancestry cases, 4,083 East Asian ancestry controls	NA	5q35.2		rs17808848-?	NR	3E-6	(ser_lg_lmp)	2.11		Illumina [11595112] (imputed)	N
1917	chr5	174680032	174680033	rs73323772	28203683	Heit JA	2017-02-16	Thromb Haemost	Identification of unique venous thromboembolism-susceptibility variants in African-Americans.	Venous thromboembolism adjusted for sickle cell variant rs77121243-T	393 African American cases, 4,941 African American controls.	NR	5q35.2	DRD1	rs73323772-C	0.0669	8E-6		1.919	[1.441-2.556]	Affymetrix, Illumina [14074516] (imputed)	N
1917	chr5	174686988	174686989	rs59238134	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q35.2	NR	rs59238134-G	0.1359	2E-8	(SHMT1)	0.6413	NR unit increase	Illumina [1671387] (imputed)	N
1917	chr5	174687481	174687482	rs10057481	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	5q35.2	NR	rs10057481-?	NR	6E-7		0.0086854	[0.0053-0.0121] unit decrease	Affymetrix [805426] (imputed)	N
1917	chr5	174697890	174697891	rs13190379	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	5q35.2	DRD1	rs13190379-?		5E-16				Affymetrix, Illumina [NR] (imputed)	N
1917	chr5	174709898	174709899	rs1471107	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5q35.2	SFXN1	rs1471107-?	NR	9E-6	(TAG 54:2)	0.14885163	[0.083-0.215] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1918	chr5	174720892	174720893	rs7449443	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	5q35.2	FLJ16171, DRD1	rs7449443-T	0.5968	4E-8		5.51	[NR] z score decrease	Affymetrix, Illumina [~ 11000000] (imputed)	N
1918	chr5	174729816	174729817	rs115634042	31311600	Namjou B	2019-07-17	BMC Med	GWAS and enrichment analyses of non-alcoholic fatty liver disease identify new trait-associated genes and pathways across eMERGE Network.	Alanine aminotransferase levels in non-alcoholic fatty liver disease	1,075 European ancestry individuals	NA	5q35.2	intergenic	rs115634042-A	0.0232126	4E-6		0.575996	[0.33-0.82] unit decrease	NR [7263501] (imputed)	N
1918	chr5	174761094	174761095	rs12652255	22310353	Man M	2012-02-07	Pharmacogenomics J	Beyond single-marker analyses: mining whole genome scans for insights into treatment responses in severe sepsis.	Treatment response for severe sepsis	1,446 individuals	NA	5q35.2	DRD1	rs12652255-?	NR	8E-6	(CC vs. not CC)			Illumina [856627]	N
1918	chr5	174762176	174762176	rs35095594	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip	15 Asian ancestry cases, 13 European ancestry cases, 15 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	5q35.2	NR	rs35095594-?	NR	8E-6		3.96	[3.1-5.05]	Illumina [539000] (imputed)	N
1918	chr5	174782118	174782119	rs251925	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	5q35.2	DRD1	rs251925-A	0.285	5E-6	(IGF1 free )	0.03	[NR] ng/mL increase	Illumina [899892]	N
1918	chr5	174848016	174848017	rs265994	31311600	Namjou B	2019-07-17	BMC Med	GWAS and enrichment analyses of non-alcoholic fatty liver disease identify new trait-associated genes and pathways across eMERGE Network.	Non-alcoholic fatty liver disease activity score in non-alcoholic fatty liver disease	235 European ancestry individuals	NA	5q35.2	intergenic	rs265994-T	0.214894	2E-6		0.879079	[0.53-1.23] unit increase	NR [7263501] (imputed)	N
1919	chr5	174870901	174870902	rs265981	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	5q35.2	DRD1, SFXN1, ARL2BPP6, HRH2	rs265981-G	NR	5E-6	(sleep duration, weekdays)	0.2206	[0.13-0.32] unit decrease	Affymetrix [7141204] (imputed)	N
1919	chr5	174875977	174875978	rs72815442	34777790	A Christensen M	2021-10-13	Ann Med Surg (Lond)	An assessment of the effect of the genotype on postoperative venous thromboembolism risk in 140,831 surgical patients.	Postoperative venous thromboembolism	799 cases, 140,032 controls	NA	5q35.2		rs72815442-?	NR	4E-6				Affymetrix [254068]	N
1919	chr5	174888895	174888896	rs2471020	32999390	Trajanoska K	2020-09-30	Commun Biol	Genetic basis of falling risk susceptibility in the UK Biobank Study.	Falling risk	89,076 European ancestry cases, 362,103 European ancestry controls	2,215 cases, 6289 controls	5q35.2	DRD1	rs2471020-C	0.59	2E-7		1.02	[1.01-1.03]	Affymetrix [7745390] (imputed)	N
1919	chr5	174895316	174895317	rs183173835	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	5q35.2	SFXN1	rs183173835-T	0.0017	8E-6		1.358	[0.76-1.95] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1919	chr5	174948942	174948943	rs34907038	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glutamine levels	114,751 European ancestry individuals	NA	5q35.2		rs34907038-C	0.994619	2E-13		0.220114	[0.16-0.28] unit decrease	NR [11722792] (imputed)	N
1920	chr5	175028899	175028900	rs2001690	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Rostral anterior cingulate cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	5q35.2	NR	rs2001690-?		7E-6				Illumina [4322238] (imputed)	N
1920	chr5	175083753	175083754	rs2963854	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	5q35.2	SFXN1, HRH2	rs2963854-G	0.196	2E-7		0.03412	[0.021-0.047] unit decrease	Illumina [13520550] (imputed)	N
1920	chr5	175084332	175084333	rs9313723	30926877	Brcic L	2019-03-29	Sci Rep	Genome-wide association analysis suggests novel loci underlying thyroid antibodies in Hashimoto's thyroiditis.	Anti-thyroid peroxidase (TPOAb) levels in Hashimoto's thyroiditis	405 European ancestry cases	NA	5q35.2	HRH2	rs9313723-A	0.9	9E-6		0.575	[0.32-0.83] unit decrease	Illumina [6007542] (imputed)	N
1921	chr5	175178874	175178875	rs10039217	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	5q35.2	CPLX2	rs10039217-G	0.013	3E-7	(Sleep duration )	0.04	[NR] min/d increase	Illumina [899892]	N
1921	chr5	175194986	175194987	rs114860848	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 20)	2,187 European ancestry individuals	NA	5q35.2	NR	rs114860848-G	0.007107	3E-6		0.8462	[0.49-1.2] unit decrease	Illumina [10677593] (imputed)	N
1922	chr5	175244033	175244034	rs7448069	23527680	Ebejer JL	2013-04-01	Twin Res Hum Genet	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (inattention symptoms)	1,851 individuals	155 individuals	5q35.2	NR	rs7448069-T		1E-6				Illumina [2373249] (imputed)	N
1922	chr5	175244436	175244437	rs55914911	24951543	Liao J	2014-06-20	Hum Mol Genet	Meta-analysis of genome-wide association studies in multiethnic Asians identifies two loci for age-related nuclear cataract.	Age-related nuclear cataracts	2,369 Malay ancestry individuals, 2,200 Indian ancestry individuals, 2,571 Chinese ancestry individuals	NA	5q35.2	CPLX2	rs55914911-G	NR	1E-6	(Fixed effect)	0.23	[0.13-0.33] unit increase	Illumina [4736131] (imputed)	N
1922	chr5	175339983	175339984	rs7735794	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	5q35.2	CPLX2, THOC3	rs7735794-A	0.2241	2E-8		1.0349985		Affymetrix [11880941] (imputed)	N
1922	chr5	175339983	175339984	rs7735794	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	5q35.2		rs7735794-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1922	chr5	175346789	175346790	rs10476176	29594489	Apewokin S	2018-03-28	Support Care Cancer	Host genetic susceptibility to Clostridium difficile infections in patients undergoing autologous stem cell transplantation: a genome-wide association study.	Clostridium difficile infection in multiple myeloma	57 European ancestry cases, 589 European ancestry controls	NA	5q35.2	NR	rs10476176-?		3E-6				Illumina [892589]	N
1924	chr5	175616412	175616413	rs7735282	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	5q35.2	LOC643201	rs7735282-T	NR	2E-10		0.0258509	[0.018-0.034] unit increase	Affymetrix [16832071] (imputed)	N
1924	chr5	175618616	175618617	rs7712082	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q35.2	NR	rs7712082-C	0.581214	8E-38				Affymetrix, Illumina [22063850] (imputed)	N
1924	chr5	175618616	175618617	rs7712082	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	5q35.2	NR	rs7712082-C	0.579761	1E-38		0.024959	[0.021-0.029] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
1924	chr5	175624975	175624976	rs7716229	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	5q35.2	RP11-844P9.2	rs7716229-T	0.4227	5E-11		0.02355998	[0.017-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
1924	chr5	175627442	175627443	rs71591813	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	5q35.2		rs71591813-?	NR	1E-33				NR [~ 8900000] (imputed)	N
1925	chr5	175642257	175642258	rs368082223	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	5q35.2		rs368082223-G	0.420993	1E-34		0.02770264	[0.023-0.032] unit increase	Affymetrix [93095623] (imputed)	N
1925	chr5	175695205	175695207	rs201332049	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	5q35.2		rs201332049-A	NR	1E-9		0.0164	[0.011-0.022] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
1925	chr5	175765798	175765799	rs70991537	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in non-diabetics	152,624 European ancestry individuals, 36,369 African American individuals	NA	5q35.2	C5orf25	rs70991537-T	0.695	1E-8		0.328	[0.21-0.44] unit increase	Affymetrix [NR] (imputed)	N
1926	chr5	175806175	175806176	rs13158884	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Firmicutes E abundance in stool	5,959 Finnish ancestry individuals	NA	5q35.2		rs13158884-T	0.175748	2E-8		0.0218969	[0.014-0.03] unit decrease	Illumina [7980478] (imputed)	N
1926	chr5	175838748	175838749	rs72807224	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	5q35.2		rs72807224-A	NR	1E-9		0.0288	[0.02-0.038] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
1926	chr5	175843883	175843884	rs67877276	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5q35.2		rs67877276-?	NR	1E-17				NR [~ 8900000] (imputed)	N
1926	chr5	175849988	175849989	rs2913737	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	5q35.2	CLTB	rs2913737-A	0.169	8E-6	(TG )	0.03	[NR] mg/dL increase	Illumina [899892]	N
1927	chr5	175904140	175904141	rs11134977	32853455	Schwantes-An TH	2020-08-27	Hepatology	Genome-wide association study and meta-analysis on alcohol-related liver cirrhosis identifies novel genetic risk factors.	Cirrhosis (alcohol related)	1,128 European ancestry cases, 849 European ancestry heavy-drinking controls	up to 2,369 European ancestry cases, up to 10,434 European ancestry heavy-drinking controls	5q35.2	FAF2	rs11134977-T	NR	1E-7		0.2241	[0.14-0.31] unit increase	Illumina [9377111] (imputed)	N
1927	chr5	175912993	175912994	rs3888233	28039263	Wheeler HE	2016-12-30	Clin Cancer Res	Variants in WFS1 and Other Mendelian Deafness Genes Are Associated with Cisplatin-Associated Ototoxicity.	Cisplatin-induced ototoxicity	511 European ancestry testicular cancer survivor individuals	238 children	5q35.2	UBXD8	rs3888233-A	NR	9E-6		4.451	z score increase	Illumina [5060354] (imputed)	N
1927	chr5	175948315	175948316	rs9313736	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Age at menopause	approximately 143,000 European ancestry individuals	NA	5q35.2		rs9313736-?	NR	8E-11				NR [~ 8900000] (imputed)	N
1927	chr5	175956176	175956177	rs2241584	26414677	Day FR	2015-11-01	Nat Genet	Large-scale genomic analyses link reproductive aging to hypothalamic signaling, breast cancer susceptibility and BRCA1-mediated DNA repair.	Menopause (age at onset)	up to 69,626 European ancestry women	NA	5q35.2	UIMC1	rs2241584-A	0.38	2E-11		0.14	[0.1-0.18] years decrease	Affymetrix, Illumina [~ 2600000] (imputed)	N
1927	chr5	175956270	175956271	rs890835	22267201	Stolk L	2012-01-22	Nat Genet	Meta-analyses identify 13 loci associated with age at menopause and highlight DNA repair and immune pathways.	Menopause (age at onset)	38,968 European ancestry female individuals	Up to 14,435 European ancestry female individuals	5q35.2	RNF44	rs890835-A	0.112	6E-6		0.177	[0.1-0.25] years increase	Affymetrix, Illumina [2551160] (imputed)	N
1927	chr5	175993351	175993352	rs368250579	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	5q35.2	CDHR2	rs368250579-T	0.0017	3E-6		0.5441	[0.31-0.77] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1928	chr5	176057327	176057328	rs11951438	34241534	Lu Y	2021-07-09	Circ Genom Precis Med	Multiethnic Genome-wide Association Study of Subclinical Atherosclerosis in Individuals with Type 2 Diabetes.	Carotid artery intima-media thickness in type 2 diabetes	838 African American individuals	NA	5q35.2		rs11951438-A	0.22	4E-7		0.07	[0.05-0.09] unit increase	Affymetrix, Illumina [19600000] (imputed)	N
1928	chr5	176075393	176075394	rs57117264	30134803	Matana A	2018-04-11	Mol Med	Genome-wide meta-analysis identifies novel loci associated with parathyroid hormone level.	Plasma parathyroid hormone levels	806 Korculan (founder/genetic isolate) individuals, 831 Vis (founder/genetic isolate) individuals, 959 Croatian ancestry individuals	NA	5q35.2	NR	rs57117264-?	NR	8E-6	(male)	0.22	[0.12-0.32] unit increase	Illumina [7411206] (imputed)	N
1929	chr5	176167301	176167302	rs478255	29559693	Zengini E	2018-03-20	Nat Genet	Genome-wide analyses using UK Biobank data provide insights into the genetic architecture of osteoarthritis.	Osteoarthritis (self-reported)	12,658 European ancestry cases, 50,898 European ancestry controls		5q35.2	NR	rs478255-T	0.356363	2E-6		1.0738531	[1.1-1.07]	Affymetrix [16499239] (imputed)	N
1929	chr5	176241667	176241668	rs557660440	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5q35.2		rs557660440-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1929	chr5	176251630	176251631	rs72811286	33824429	Fjukstad KK	2021-04-06	Pharmacogenomics J	Genetic variants associated with cardiometabolic abnormalities during treatment with selective serotonin reuptake inhibitors: a genome-wide association study.	Triglyceride levels x SSRI levels (escitalopram or citalopram) interaction in schizophrenia or bipolar disorder	181 European ancestry individuals	NA	5q35.2	UNC5A	rs72811286-G	NR	5E-6		12.0554	[7.08-17.04] unit increase	Illumina [NR] (imputed)	N
1930	chr5	176324728	176324729	rs6861925	30194396	Rafnar T	2018-09-07	Nat Commun	Variants associating with uterine leiomyoma highlight genetic background shared by various cancers and hormone-related traits.	Uterine fibroids	16,595 European ancestry cases, 523,330 European ancestry controls	NA	5q35.2	HK3	rs6861925-C	0.47596	3E-9		1.07	[1.05-1.1]	Affymetrix, Illumina [43421991] (imputed)	N
1930	chr5	176324728	176324729	rs6861925	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	5q35.2		rs6861925-C	0.4902	2E-10		0.009	[0.0063-0.0117] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1930	chr5	176324728	176324729	rs6861925	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	5q35.2	Intergenic	rs6861925-C	0.4902	6E-10	(MTAG)	0.0081	[0.0056-0.0106] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1930	chr5	176378573	176378574	rs365132	29773799	Horikoshi M	2018-05-17	Nat Commun	Elucidating the genetic architecture of reproductive ageing in the Japanese population.	Menarche (age at onset)	67,029 Japanese ancestry women	73,397 European ancestry women	5q35.2	NR	rs365132-G	0.4936	9E-13	(japanese)	0.192	[0.14-0.24] year decrease	Illumina [at least 532488] (imputed)	N
1930	chr5	176378573	176378574	rs365132	26414677	Day FR	2015-11-01	Nat Genet	Large-scale genomic analyses link reproductive aging to hypothalamic signaling, breast cancer susceptibility and BRCA1-mediated DNA repair.	Menopause (age at onset)	up to 69,626 European ancestry women	NA	5q35.2	UIMC1	rs365132-G	0.51	1E-33		0.24	[0.2-0.28] years decrease	Affymetrix, Illumina [~ 2600000] (imputed)	N
1930	chr5	176378573	176378574	rs365132	22267201	Stolk L	2012-01-22	Nat Genet	Meta-analyses identify 13 loci associated with age at menopause and highlight DNA repair and immune pathways.	Menopause (age at onset)	38,968 European ancestry female individuals	Up to 14,435 European ancestry female individuals	5q35.2	UIMC1	rs365132-T	0.49	9E-32		0.287	[0.24-0.34] years increase	Affymetrix, Illumina [2551160] (imputed)	N
1930	chr5	176378573	176378574	rs365132	19448621	He C	2009-05-17	Nat Genet	Genome-wide association studies identify loci associated with age at menarche and age at natural menopause.	Menarche and menopause (age at onset)	17,438 European ancestry female individuals	NA	5q35.2	UIMC1	rs365132-T	0.49	8E-14	(age at natural menopause)	0.39	[0.29-0.49] years increase	Illumina [317759]	N
1930	chr5	176379438	176379439	rs394335	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	5q35.2	NR	rs394335-?	NR	2E-13				Affymetrix [~ 8270000] (imputed)	N
1930	chr5	176394673	176394674	rs56287626	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	5q35.2	NR	rs56287626-?	NR	1E-10				Affymetrix [~ 8270000] (imputed)	N
1931	chr5	176425280	176425281	rs353474	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	5q35.2		rs353474-A	0.4915	1E-8	(conditional-joint)	0.008	[0.0053-0.0107] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1931	chr5	176433062	176433063	rs353490	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	5q35.2	Intergenic	rs353490-T	0.498	3E-9	(MTAG)	0.0097	[0.0066-0.0128] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1931	chr5	176434981	176434982	rs7726380	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	5q35.2	UIMC1	rs7726380-C	NR	4E-9		0.0206158	[0.014-0.027] unit decrease	Affymetrix [321114] (imputed)	N
1931	chr5	176448138	176448139	rs58279426	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Age at menopause	approximately 143,000 European ancestry individuals	NA	5q35.2		rs58279426-?	NR	9E-48				NR [~ 8900000] (imputed)	N
1931	chr5	176450836	176450837	rs2456181	31649266	Gallagher CS	2019-10-24	Nat Commun	Genome-wide association and epidemiological analyses reveal common genetic origins between uterine leiomyomata and endometriosis.	Uterine fibroids and heavy menstrual bleeding	3,409 European ancestry cases, 199,171 European ancestry controls	NA	5q35.2	NR	rs2456181-G	0.48	4E-10		1.1494253	[1.1-1.2]	Affymetrix [10308721] (imputed)	N
1931	chr5	176450836	176450837	rs2456181	31649266	Gallagher CS	2019-10-24	Nat Commun	Genome-wide association and epidemiological analyses reveal common genetic origins between uterine leiomyomata and endometriosis.	Uterine fibroids	20,406 European ancestry cases, 223,918 European ancestry controls	15,068 European ancestry cases, 43,587 European ancestry controls	5q35.2	ZNF346, UIMC1	rs2456181-C	0.49	1E-11		1.06	[1.04-1.08]	Affymetrix, Illumina [8662096] (imputed)	N
1931	chr5	176451077	176451078	rs115360517	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	5q35.2	NR	rs115360517-?	NR	9E-10				Affymetrix [~ 8270000] (imputed)	N
1931	chr5	176454080	176454081	rs58400555	30194396	Rafnar T	2018-09-07	Nat Commun	Variants associating with uterine leiomyoma highlight genetic background shared by various cancers and hormone-related traits.	Uterine fibroids	16,595 European ancestry cases, 523,330 European ancestry controls	NA	5q35.2	ZNF346	rs58400555-T	0.47497	2E-9		1.07	[1.05-1.1]	Affymetrix, Illumina [43421991] (imputed)	N
1931	chr5	176465269	176465270	rs34933909	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Uterine fibroids	21,024 European ancestry cases, 237,694 European ancestry controls, 14,475 East Asian ancestry cases, 65,733 East Asian ancestry controls	NA	5q35.2		rs34933909-T	NR	1E-9		0.0916	[0.062-0.121] unit increase	Affymetrix, Illumina [25795146] (imputed)	N
1931	chr5	176465269	176465270	rs34933909	29773799	Horikoshi M	2018-05-17	Nat Commun	Elucidating the genetic architecture of reproductive ageing in the Japanese population.	Menopause (age at onset)	43,861 Japanese ancestry women	32,545 European ancestry women	5q35.2	UIMC1	rs34933909-T	0.49	9E-14	(japanese)	0.2	[0.14-0.26] year increase	Illumina [at least 532488] (imputed)	N
1931	chr5	176472338	176472339	rs166138	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	5q35.2	ZNF346	rs166138-A	0.2836	3E-6		0.035	[0.02-0.05] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1931	chr5	176478625	176478626	rs61462283	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Word reading	3,468 European ancestry individuals	NA	5q35.2	ZNF346-IT1	rs61462283-A	0.94501975	3E-6		0.682135	unit decrease	Illumina [6969139] (imputed)	N
1931	chr5	176494101	176494102	rs183686	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	5q35.2	NR	rs183686-A	0.494036	1E-8		0.039849903	[0.026-0.054] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1931	chr5	176508191	176508191	rs113168705	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	5q35.2	ZNF346	rs113168705-T	0.7032	1E-6		0.038	[0.023-0.053] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1931	chr5	176509192	176509193	rs244711	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	5q35.2		rs244711-T	NR	5E-9		0.0114	[0.0075-0.0153] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1931	chr5	176509192	176509193	rs244711	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	5q35.2	FGFR4	rs244711-T	0.686	2E-37		0.0279	[0.024-0.032] unit increase	Affymetrix [18391927] (imputed)	N
1931	chr5	176509192	176509193	rs244711	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	5q35.2	ZNF346, FGFR4	rs244711-?	NR	1E-11		0.026007323	[0.018-0.034] unit increase	Illumina [27896057] (imputed)	N
1931	chr5	176509192	176509193	rs244711	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5q35.2		rs244711-?	NR	8E-202				NR [~ 8900000] (imputed)	N
1931	chr5	176509583	176509584	rs2546095	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	5q35.2	NR	rs2546095-?	NR	5E-10				Affymetrix [~ 8270000] (imputed)	N
1931	chr5	176509583	176509584	rs2546095	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	5q35.2	NR	rs2546095-?	NR	7E-16				Affymetrix [~ 8270000] (imputed)	N
1931	chr5	176511094	176511095	rs398198	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	5q35.2	FGFR4	rs398198-T	NR	4E-12		0.0265477	[0.019-0.034] unit decrease	Affymetrix [127266] (imputed)	N
1931	chr5	176511431	176511432	rs451643	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	5q35.2	NR	rs451643-T	0.296811	7E-10		0.0644309	[0.043-0.085] unit increase	Affymetrix [21375087] (imputed)	N
1931	chr5	176513895	176513896	rs3135911	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	5q35.2	FGFR4	rs3135911-A	NR	2E-9		0.0207853	[0.014-0.028] unit decrease	Affymetrix [323858] (imputed)	N
1931	chr5	176513895	176513896	rs3135911	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	5q35.2	FGFR4	rs3135911-A	NR	2E-10		0.0221661	[0.015-0.029] unit decrease	Affymetrix [127266] (imputed)	N
1931	chr5	176513895	176513896	rs3135911	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	46,511 Asian ancestry cases, 169,776 Asian ancestry controls	NA	5q35.2	NR	rs3135911-C	0.5586	3E-10		0.0549	[0.038-0.072] unit decrease	Affymetrix, Illumina [1077427] (imputed)	N
1931	chr5	176513895	176513896	rs3135911	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	5q35.2	FGFR4	rs3135911-A	0.432	2E-12		1.05	[1.04-1.06]	Affymetrix, Illumina [11800000] (imputed)	N
1931	chr5	176513895	176513896	rs3135911	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	5q35.2	NR	rs3135911-A	0.290906	5E-15		0.0585351	[0.044-0.073] unit increase	Affymetrix [17914406] (imputed)	N
1931	chr5	176513895	176513896	rs3135911	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	5q35.2	FGFR4, ZNF346	rs3135911-A	0.44	4E-10		1.06	1.04-1.08	Illumina [12557761] (imputed)	N
1931	chr5	176515112	176515113	rs3135913	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	5q35.2	NR	rs3135913-?	NR	1E-13				Affymetrix [~ 8270000] (imputed)	N
1931	chr5	176515815	176515816	rs45603934	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	5q35.2	FGFR4	rs45603934-C	NR	1E-9		0.0232163	[0.016-0.031] unit decrease	Affymetrix [323858] (imputed)	N
1931	chr5	176516630	176516631	rs1966265	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	5q35.2		rs1966265-A	NR	7E-12		0.0465	[0.033-0.06] unit decrease	Affymetrix, Illumina [25845091] (imputed)	N
1931	chr5	176516630	176516631	rs1966265	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	5q35.2	FGFR4	rs1966265-A	NR	3E-26		0.0382922	[0.031-0.045] unit increase	Affymetrix [323858] (imputed)	N
1931	chr5	176516630	176516631	rs1966265	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	5q35.2	FGFR4	rs1966265-A	NR	1E-9		0.0197674	[0.013-0.026] unit increase	Affymetrix [319769] (imputed)	N
1931	chr5	176516630	176516631	rs1966265	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	5q35.2	FGFR4	rs1966265-A	NR	3E-31		0.0419878	[0.035-0.049] unit increase	Affymetrix [127266] (imputed)	N
1931	chr5	176516630	176516631	rs1966265	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	5q35.2	FGFR4	rs1966265-A	NR	2E-25		0.034206	[0.028-0.041] unit increase	Affymetrix [321114] (imputed)	N
1931	chr5	176516630	176516631	rs1966265	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	5q35.2	FGFR4	rs1966265-A	NR	2E-34		0.0436634	[0.037-0.051] unit increase	Affymetrix [321114] (imputed)	N
1931	chr5	176516630	176516631	rs1966265	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	5q35.2	FGFR4	rs1966265-A	NR	4E-14		0.0280308	[0.021-0.035] unit decrease	Affymetrix [323858] (imputed)	N
1931	chr5	176516630	176516631	rs1966265	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	5q35.2	FGFR4	rs1966265-A	NR	3E-12		0.0230494	[0.017-0.029] unit increase	Affymetrix [321169] (imputed)	N
1931	chr5	176516630	176516631	rs1966265	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	5q35.2	FGFR4	rs1966265-A	NR	5E-13		0.0258403	[0.019-0.033] unit increase	Affymetrix [323858] (imputed)	N
1931	chr5	176516630	176516631	rs1966265	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	5q35.2	FGFR4	rs1966265-?	NR	3E-12		0.01990651	[0.014-0.025] unit increase	Illumina [27896057] (imputed)	N
1931	chr5	176516630	176516631	rs1966265	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 157,516 European ancestry women, up to 180,131 African American, South Asian, East Asian and Hispanic ancestry women	up to 62,368 European ancestry women	5q35.2	FGFR4	rs1966265-A	0.2344	1E-8		0.0198	[0.013-0.027] unit increase	Affymetrix, Illumina [at least 228985]	N
1931	chr5	176516630	176516631	rs1966265	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 157,516 European ancestry women	up to 62,368 European ancestry women	5q35.2	FGFR4	rs1966265-A	0.2378	1E-7		0.0188	[0.012-0.026] unit increase	Affymetrix, Illumina [at least 228985]	N
1931	chr5	176516630	176516631	rs1966265	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 130,976 European ancestry men, up to 164,238  African American, South Asian, East Asian and Hispanic ancestry men	up to 62,500 European ancestry men	5q35.2	FGFR4	rs1966265-A	0.238	5E-13		0.0261	[0.019-0.033] unit increase	Affymetrix, Illumina [at least 228985]	N
1931	chr5	176516630	176516631	rs1966265	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 130,976 European ancestry men	up to 62,500 European ancestry men	5q35.2	FGFR4	rs1966265-A	0.2377	7E-12		0.0256	[0.018-0.033] unit increase	Affymetrix, Illumina [at least 228985]	N
1931	chr5	176516630	176516631	rs1966265	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	288,492 European ancestry individuals, up to 15,687 African American individuals, up to 29,315 South Asian ancestry individuals, up to 6,800 East Asian ancestry individuals, up to 4,075 Hispanic ancestry individuals	132,177 European ancestry individuals	5q35.2	FGFR4	rs1966265-A	0.236	2E-19		0.0226	[0.018-0.028] unit increase	Affymetrix, Illumina [at least 228985]	N
1931	chr5	176516630	176516631	rs1966265	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	288,492 European ancestry individuals	132,177 European ancestry individuals	5q35.2	FGFR4	rs1966265-A	0.2379	8E-17		0.0217	[0.017-0.027] unit increase	Affymetrix, Illumina [at least 228985]	N
1931	chr5	176516630	176516631	rs1966265	30320955	Baird DA	2018-10-15	J Bone Miner Res	Identification of novel loci associated with hip shape: a meta-analysis of genome-wide association studies.	Hip shape (DXA scan)	10,217 European ancestry individuals, 5,717 individuals	NA	5q35.2	FGFR4	rs1966265-T	0.38	4E-20	(hip shape mode 2)	0.13	[0.1-0.16] unit increase	Illumina [7191926] (imputed)	N
1931	chr5	176517291	176517292	rs442856	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	5q35.2	FGFR4	rs442856-A	NR	9E-13		0.024706	[0.018-0.031] unit decrease	Affymetrix [321114] (imputed)	N
1931	chr5	176517325	176517326	rs422421	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	5q35.2	NR	rs422421-C	NR	2E-16		0.025	[0.019-0.031] unit decrease	Affymetrix [9000000] (imputed)	N
1931	chr5	176517325	176517326	rs422421	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	5q35.2	NR	rs422421-C	NR	6E-11		0.019	[0.013-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
1931	chr5	176517325	176517326	rs422421	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	5q35.2	NR	rs422421-C	NR	9E-11		0.0188	[0.013-0.024] unit increase	Affymetrix [9000000] (imputed)	N
1931	chr5	176517325	176517326	rs422421	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	5q35.2	FGFR4	rs422421-T	0.2258	2E-9		0.0487	[0.033-0.065] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1931	chr5	176517325	176517326	rs422421	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	5q35.2	FGFR4	rs422421-T	0.218	2E-20		0.034	[0.026-0.042] unit decrease	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
1931	chr5	176517325	176517326	rs422421	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	5q35.2	FGFR4/NSD1	rs422421-T	0.22	1E-12		0.031	[NR] unit decrease	Affymetrix, Illumina [2834208] (imputed)	N
1931	chr5	176518425	176518426	rs396007	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	5q35.2	FGFR4	rs396007-T	NR	8E-17		0.0312443	[0.024-0.039] unit decrease	Affymetrix [321114] (imputed)	N
1931	chr5	176520242	176520243	rs351855	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	5q35.2	FGFR4	rs351855-A	NR	1E-9		0.020441	[0.014-0.027] unit decrease	Affymetrix [321114] (imputed)	N
1931	chr5	176520242	176520243	rs351855	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	5q35.2	FGFR4	rs351855-A		2E-11		0.016	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
1931	chr5	176520242	176520243	rs351855	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	5q35.2	FGFR4	rs351855-A	0.295287	6E-6		0.01174	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1931	chr5	176520242	176520243	rs351855	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	5q35.2	FGFR4	rs351855-A	0.295287	1E-7	(females)	0.01673	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1931	chr5	176520242	176520243	rs351855	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	5q35.2	FGFR4	rs351855-A	0.295287	9E-15		0.01609	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1931	chr5	176520242	176520243	rs351855	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	5q35.2	FGFR4	rs351855-A	0.295287	8E-6	(females)	0.01211	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1931	chr5	176520242	176520243	rs351855	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	5q35.2	FGFR4	rs351855-A	0.295287	3E-7	(males)	0.02075	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1931	chr5	176520242	176520243	rs351855	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	Low density lipoprotein cholesterol levels	up to 237,050 European ancestry individuals, up to 16,935 African ancestry individuals, up to 30,468 South Asian ancestry individuals, up to 8,287 East Asian ancestry individuals, 5,084 Hispanic individuals	up to 286,268 European and unknown ancestry individuals	5q35.2	NR	rs351855-A	NR	1E-9		0.013211779	[0.0089-0.0175] unit increase	Illumina [242289]	N
1931	chr5	176520242	176520243	rs351855	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	Low density lipoprotein cholesterol levels	up to 237,050 European ancestry individuals	NA	5q35.2	NR	rs351855-A	0.29	3E-6		0.018	unit decrease	Illumina [242289]	N
1931	chr5	176520242	176520243	rs351855	26785701	Wen W	2016-01-20	Sci Rep	Genome-wide association studies in East Asians identify new loci for waist-hip ratio and waist circumference.	Waist-to-hip ratio adjusted for body mass index	up to 39,869 East Asian individuals	up to 20,137 East Asian individuals, up to 209,947 individuals	5q35.2	FGFR4	rs351855-G	0.5671287228999999	2E-6	(East Asian men)	0.0679	[0.04-0.096] unit increase	Affymetrix, Illumina [at least 1850000] (imputed)	N
1931	chr5	176521455	176521456	rs2011077	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	5q35.2		rs2011077-T	0.548501	6E-10		0.0124641	[0.0085-0.0164] unit increase	Illumina [13479295] (imputed)	N
1931	chr5	176521455	176521456	rs2011077	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	5q35.2	FGFR4	rs2011077-T	NR	4E-14		0.0245634	[0.018-0.031] unit increase	Affymetrix [321016] (imputed)	N
1931	chr5	176521455	176521456	rs2011077	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	5q35.2	FGFR4	rs2011077-T	0.2336	2E-8		0.0462	[0.03-0.062] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1931	chr5	176521455	176521456	rs2011077	25865494	Chan Y	2015-04-09	Am J Hum Genet	Genome-wide Analysis of Body Proportion Classifies Height-Associated Variants by Mechanism of Action and Implicates Genes Important for Skeletal Development.	Sitting height ratio	3,545 African American individuals, 12,965 European ancestry women, 8,625 European ancestry men	NA	5q35.2	NR	rs2011077-T	0.234	3E-7	(EA)	0.062	[0.038-0.086] unit decrease	Affymetrix, Illumina [up to 10250422] (imputed)	N
1931	chr5	176522035	176522036	rs31778	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	5q35.2		rs31778-?	NR	4E-11				NR [~ 8900000] (imputed)	N
1931	chr5	176526269	176526270	rs183041	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	5q35.2	NR	rs183041-?	NR	9E-10		0.15182	[0.1-0.2] unit increase	Affymetrix [7794483] (imputed)	N
1931	chr5	176526269	176526270	rs183041	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	5q35.2	NR	rs183041-?	NR	2E-8	(male)	0.21918	[0.14-0.3] unit increase	Affymetrix [7794483] (imputed)	N
1931	chr5	176527576	176527577	rs6556301	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	5q35.3	FGFR4	rs6556301-T	NR	3E-9		0.0174413	[0.012-0.023] unit increase	Affymetrix [319769] (imputed)	N
1931	chr5	176527576	176527577	rs6556301	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	5q35.3	FGFR4	rs6556301-T	NR	7E-20		0.0270205	[0.021-0.033] unit increase	Affymetrix [321114] (imputed)	N
1931	chr5	176527576	176527577	rs6556301	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	5q35.3	FGFR4	rs6556301-T	NR	1E-29		0.0363226	[0.03-0.043] unit increase	Affymetrix [321114] (imputed)	N
1931	chr5	176527576	176527577	rs6556301	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	5q35.3	FGFR4	rs6556301-T	NR	9E-9		0.0168782	[0.011-0.023] unit increase	Affymetrix [321016] (imputed)	N
1931	chr5	176527576	176527577	rs6556301	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	5q35.3	FGFR4	rs6556301-T	NR	6E-12		0.0204365	[0.015-0.026] unit increase	Affymetrix [321169] (imputed)	N
1931	chr5	176527576	176527577	rs6556301	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	5q35.3	FGFR4	rs6556301-T	NR	2E-14		0.024659	[0.018-0.031] unit increase	Affymetrix [323858] (imputed)	N
1931	chr5	176527576	176527577	rs6556301	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	5q35.3	NR	rs6556301-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
1931	chr5	176527576	176527577	rs6556301	30888730	Hsu YH	2019-03-19	J Bone Miner Res	Meta-Analysis of Genomewide Association Studies Reveals Genetic Variants for Hip Bone Geometry.	Narrowest width of the femoral neck	18,719 individuals	8,334 individuals	5q35.3	NSD1, RAB24, FGFR4	rs6556301-?		2E-8		5.583	NR z score decrease	Affymetrix, Illumina [up to 2622085] (imputed)	N
1931	chr5	176527576	176527577	rs6556301	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	5q35.3	NR	rs6556301-T	0.37	4E-32		0.022	[0.018-0.026] unit increase	Affymetrix [2446094] (imputed)	N
1931	chr5	176527576	176527577	rs6556301	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	5q35.3	NR	rs6556301-T	0.37	5E-8				Affymetrix [2446094] (imputed)	N
1931	chr5	176527576	176527577	rs6556301	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	315,284 European ancestry male individuals	NA	5q35.3	NR	rs6556301-T	0.3706	2E-29		0.0206	[0.017-0.024] unit increase	NR [~ 27400000] (imputed)	N
1931	chr5	176527576	176527577	rs6556301	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	5q35.3	NA	rs6556301-T	0.3707	8E-11		0.0113	[0.008-0.0146] unit decrease	NR [~ 27400000] (imputed)	N
1931	chr5	176527576	176527577	rs6556301	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	5q35.3	FGFR4	rs6556301-T	0.3595	8E-10	(women)	0.0381	[0.026-0.05] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1931	chr5	176527576	176527577	rs6556301	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	5q35.3	FGFR4	rs6556301-T	0.3595	3E-15		0.032	[0.024-0.04] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1931	chr5	176527576	176527577	rs6556301	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	5q35.3	FGFR4	rs6556301-T	0.3595	1E-9	(men)	0.0362	[0.025-0.048] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1931	chr5	176527576	176527577	rs6556301	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	5q35.3	FGFR4	rs6556301-T	0.3576	4E-15	(EA)	0.033	[0.025-0.041] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1931	chr5	176527576	176527577	rs6556301	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	5q35.3	FGFR4	rs6556301-T	0.3576	1E-9	(EA, men)	0.0386	[0.026-0.051] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1931	chr5	176527576	176527577	rs6556301	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	5q35.3	FGFR4	rs6556301-T	0.3576	1E-7	(EA, women)	0.029	[0.018-0.04] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1931	chr5	176527576	176527577	rs6556301	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	5q35.3	FGFR4	rs6556301-T	0.3621	1E-7	(men)	0.0359	[0.023-0.049] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1931	chr5	176527576	176527577	rs6556301	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	5q35.3	FGFR4	rs6556301-T	0.3614	5E-8	(women)	0.0382	[0.024-0.052] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1931	chr5	176527576	176527577	rs6556301	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	5q35.3	FGFR4	rs6556301-T	0.3596	5E-8	(EA, men)	0.0379	[0.024-0.051] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1931	chr5	176527576	176527577	rs6556301	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	5q35.3	FGFR4	rs6556301-T	0.3595	9E-14		0.0345	[0.025-0.044] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1931	chr5	176527576	176527577	rs6556301	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	5q35.3	FGFR4	rs6556301-T	0.3576	7E-14	(EA)	0.0354	[0.026-0.045] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1931	chr5	176527576	176527577	rs6556301	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	5q35.3	FGFR4	rs6556301-T	0.3565	2E-8	(EA,women)	0.0337	[0.022-0.045] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1931	chr5	176527576	176527577	rs6556301	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	5q35.3	FGFR4	rs6556301-?	0.3595	4E-9	(women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1931	chr5	176527576	176527577	rs6556301	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	5q35.3	FGFR4	rs6556301-?	0.3595	4E-15				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1931	chr5	176527576	176527577	rs6556301	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	5q35.3	FGFR4	rs6556301-?	0.3595	3E-9	(men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1931	chr5	176527576	176527577	rs6556301	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	5q35.3	FGFR4	rs6556301-?	0.3576	7E-15	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1931	chr5	176527576	176527577	rs6556301	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	5q35.3	FGFR4	rs6556301-?	0.3576	6E-8	(EA, women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1931	chr5	176527576	176527577	rs6556301	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	5q35.3	FGFR4	rs6556301-?	0.3576	3E-9	(EA, men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1931	chr5	176527576	176527577	rs6556301	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (joint analysis main effects and smoking interaction)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	5q35.3	FGFR4	rs6556301-T	0.3609	7E-6				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1931	chr5	176527576	176527577	rs6556301	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (joint analysis main effects and smoking interaction)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	5q35.3	FGFR4	rs6556301-T	0.3609	5E-6	(men)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1931	chr5	176527576	176527577	rs6556301	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	5q35.3	FGFR4	rs6556301-T	0.3609	4E-7	(men)	0.0294	[0.018-0.041] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1931	chr5	176527576	176527577	rs6556301	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	5q35.3	FGFR4	rs6556301-T	0.3609	4E-7		0.0215	[0.013-0.03] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1931	chr5	176527576	176527577	rs6556301	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in smokers	19,276 European ancestry women, 16,408 European ancestry men, 973 European ancestry individuals, 1,701 African American/Afro-Caribbean ancestry women, 903 African American/Afro-Caribbean ancestry men, 10 Indian Asian ancestry women, 957 Indian Asian ancestry men, 267 Filipino ancestry women, 475 Hispanic/Latino ancestry women, 446 Hispanic/Latino ancestry men	5,485 European ancestry women, 6,471 European ancestry men, 13,416 European ancestry individuals, 253 African American/Afro-Caribbean ancestry women, 208 African American/Afro-Caribbean ancestry men	5q35.3	FGFR4	rs6556301-T	0.3605	3E-6		0.0401	[0.023-0.057] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1931	chr5	176527576	176527577	rs6556301	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in non-smokers	77,113 European ancestry women, 47,319 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	5q35.3	FGFR4	rs6556301-T	0.3605	5E-10		0.0292	[0.02-0.038] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1931	chr5	176527576	176527577	rs6556301	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in non-smokers	77,113 European ancestry women, 47,319 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	5q35.3	FGFR4	rs6556301-T	0.3605	2E-7	(men)	0.0335	[0.021-0.046] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1931	chr5	176527576	176527577	rs6556301	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	5q35.3	FGFR4	rs6556301-T	0.3605	8E-14				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1931	chr5	176527576	176527577	rs6556301	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	5q35.3	FGFR4	rs6556301-T	0.3605	3E-9	(men)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1931	chr5	176527576	176527577	rs6556301	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	5q35.3	FGFR4	rs6556301-T	0.3605	2E-6	(women)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1931	chr5	176527576	176527577	rs6556301	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	5q35.3	FGFR4	rs6556301-T	0.3605	9E-11	(men)	0.0359	[0.025-0.047] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1931	chr5	176527576	176527577	rs6556301	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	5q35.3	FGFR4	rs6556301-T	0.3605	4E-14		0.0314	[0.023-0.039] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1931	chr5	176527576	176527577	rs6556301	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	5q35.3	FGFR4	rs6556301-T	0.3605	2E-6	(women)	0.0272	[0.016-0.038] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1931	chr5	176527576	176527577	rs6556301	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex x age interaction (4df test)	up to 43,776 European ancestry men aged <50, up to 50,526 European ancestry women aged <50, up to 69,944 European ancestry men aged >50, up to 88,129 European ancestry women aged >50	NA	5q35.3	NR	rs6556301-T	0.355742327647949	1E-6				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1931	chr5	176527576	176527577	rs6556301	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	5q35.3	NR	rs6556301-T	0.355742327647949	7E-8		0.020001272	units increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1931	chr5	176527576	176527577	rs6556301	25865494	Chan Y	2015-04-09	Am J Hum Genet	Genome-wide Analysis of Body Proportion Classifies Height-Associated Variants by Mechanism of Action and Implicates Genes Important for Skeletal Development.	Sitting height ratio	3,545 African American individuals, 12,965 European ancestry women, 8,625 European ancestry men	NA	5q35.3	NR	rs6556301-T	0.364	4E-6	(EA)	0.048	[0.028-0.068] unit decrease	Affymetrix, Illumina [up to 10250422] (imputed)	N
1931	chr5	176527576	176527577	rs6556301	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	5q35.3	FGFR4	rs6556301-T	0.359	5E-7	(men)	0.0286	[0.017-0.04] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1931	chr5	176527576	176527577	rs6556301	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	5q35.3	FGFR4	rs6556301-T	0.3579	1E-6	(EA, men)	0.0285	[0.017-0.04] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1931	chr5	176527576	176527577	rs6556301	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	5q35.3	FGFR4	rs6556301-T	0.3573	3E-8	(EA)	0.0221	[0.014-0.03] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1931	chr5	176527576	176527577	rs6556301	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	5q35.3	FGFR4	rs6556301-T	0.3567	3E-8		0.0216	[0.014-0.029] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1931	chr5	176527576	176527577	rs6556301	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	5q35.3	FGFR4	rs6556301-T	0.3569	6E-10	(EA, men)	0.0356	[0.024-0.047] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1931	chr5	176527576	176527577	rs6556301	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	5q35.3	FGFR4	rs6556301-T	0.3569	2E-12	(EA)	0.0278	[0.02-0.035] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1931	chr5	176530643	176530644	rs7703225	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	5q35.3	NR	rs7703225-A	NR	1E-10		0.0224	[0.016-0.029] unit increase	Affymetrix [9000000] (imputed)	N
1931	chr5	176530643	176530644	rs7703225	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	5q35.3	NR	rs7703225-A	NR	4E-17		0.0305	[0.023-0.038] unit decrease	Affymetrix [9000000] (imputed)	N
1931	chr5	176530643	176530644	rs7703225	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	5q35.3	NR	rs7703225-A	NR	5E-14		0.0261	[0.019-0.033] unit decrease	Affymetrix [9000000] (imputed)	N
1931	chr5	176530643	176530644	rs7703225	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	5q35.3	NR	rs7703225-A	NR	1E-16		0.0288	[0.022-0.036] unit increase	Affymetrix [9000000] (imputed)	N
1931	chr5	176530643	176530644	rs7703225	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	5q35.3	NR	rs7703225-A	NR	2E-14		0.0266	[0.02-0.033] unit increase	Affymetrix [9000000] (imputed)	N
1931	chr5	176530830	176530831	rs399281	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	5q35.3	FGFR4	rs399281-G	NR	5E-10		0.0204861	[0.014-0.027] unit decrease	Affymetrix [323858] (imputed)	N
1931	chr5	176530830	176530831	rs399281	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	5q35.3	FGFR4	rs399281-G	NR	4E-9		0.0175276	[0.012-0.023] unit decrease	Affymetrix [319769] (imputed)	N
1931	chr5	176531994	176531995	rs7708822	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	5q35.3		rs7708822-?	NR	8E-30				NR [~ 8900000] (imputed)	N
1931	chr5	176532216	176532217	rs193457	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	5q35.3		rs193457-G	0.401058055	9E-12		1.0616504	[1.043578781-1.080034887]	Illumina [8919992] (imputed)	N
1931	chr5	176532318	176532319	rs34326220	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	5q35.3		rs34326220-G	0.552479553	1E-12		0.066008255	[0.048-0.084] unit decrease	Illumina [13429769] (imputed)	N
1931	chr5	176533519	176533520	rs244720	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	5q35.3	FGFR4	rs244720-T	NR	2E-19		0.0269873	[0.021-0.033] unit decrease	Affymetrix [321114] (imputed)	N
1931	chr5	176533519	176533520	rs244720	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	5q35.3	FGFR4	rs244720-T	NR	9E-9		0.0171214	[0.011-0.023] unit decrease	Affymetrix [321016] (imputed)	N
1931	chr5	176533519	176533520	rs244720	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	5q35.3	FGFR4	rs244720-T	NR	1E-8		0.0170558	[0.011-0.023] unit decrease	Affymetrix [321169] (imputed)	N
1931	chr5	176533794	176533795	rs244721	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	5q35.3	FGFR4	rs244721-T	NR	9E-13		0.0237374	[0.017-0.03] unit decrease	Affymetrix [127266] (imputed)	N
1931	chr5	176533794	176533795	rs244721	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	5q35.3	FGFR4	rs244721-T	NR	1E-20		0.0305023	[0.024-0.037] unit decrease	Affymetrix [321114] (imputed)	N
1931	chr5	176534723	176534724	rs244722	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	5q35.3		rs244722-C	0.49307595	2E-9		0.06052457	[0.041-0.08] unit decrease	Illumina [13134967] (imputed)	N
1931	chr5	176534885	176534886	rs244723	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	5q35.3	FGFR4	rs244723-G	NR	5E-11		0.0187598	[0.013-0.024] unit decrease	Affymetrix [319769] (imputed)	N
1931	chr5	176534885	176534886	rs244723	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	5q35.3	FGFR4	rs244723-G	NR	4E-19		0.0282363	[0.022-0.034] unit decrease	Affymetrix [323858] (imputed)	N
1931	chr5	176534885	176534886	rs244723	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	5q35.3	FGFR4	rs244723-G	NR	6E-13		0.0205709	[0.015-0.026] unit decrease	Affymetrix [319769] (imputed)	N
1931	chr5	176534885	176534886	rs244723	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	5q35.3	FGFR4	rs244723-G	NR	3E-23		0.0313747	[0.025-0.038] unit decrease	Affymetrix [127266] (imputed)	N
1931	chr5	176534885	176534886	rs244723	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	5q35.3	FGFR4	rs244723-G	NR	8E-23		0.0282826	[0.023-0.034] unit decrease	Affymetrix [321114] (imputed)	N
1931	chr5	176534885	176534886	rs244723	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	5q35.3	FGFR4	rs244723-G	NR	2E-28		0.0344318	[0.028-0.041] unit decrease	Affymetrix [321114] (imputed)	N
1931	chr5	176534885	176534886	rs244723	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	5q35.3	FGFR4	rs244723-G	NR	3E-8		0.017967	[0.012-0.024] unit increase	Affymetrix [323858] (imputed)	N
1931	chr5	176534885	176534886	rs244723	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	5q35.3	FGFR4	rs244723-G	NR	1E-13		0.0214379	[0.016-0.027] unit decrease	Affymetrix [321169] (imputed)	N
1931	chr5	176534885	176534886	rs244723	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	5q35.3	FGFR4	rs244723-G	NR	1E-11		0.0212828	[0.015-0.027] unit decrease	Affymetrix [323858] (imputed)	N
1931	chr5	176534885	176534886	rs244723	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	5q35.3	NR	rs244723-?	NR	5E-30				Affymetrix [~ 8270000] (imputed)	N
1931	chr5	176534885	176534886	rs244723	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	5q35.3	NR	rs244723-?	NR	6E-55				Affymetrix [~ 8270000] (imputed)	N
1931	chr5	176534885	176534886	rs244723	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	5q35.3	NR	rs244723-A	0.5292	3E-26		0.0211	[0.017-0.025] unit increase	NR [~ 27400000] (imputed)	N
1931	chr5	176534885	176534886	rs244723	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	5q35.3	NA	rs244723-A	0.5292	9E-14		0.0148	[0.011-0.019] unit increase	NR [~ 27400000] (imputed)	N
1931	chr5	176535030	176535031	rs625882	31609978	Huang L	2019-10-14	PLoS Genet	Genetic factors define CPO and CLO subtypes of nonsyndromicorofacial cleft.	Nonsyndromic cleft lip	945 Southern Han Chinese ancestry cases, 5,048 Southern Han Chinese ancestry controls	1,273 Han Chinese ancestry cases, 5,097 Han Chinese ancestry controls	5q35.3	FGFR4, NSD1	rs625882-T	0.412	2E-8		1.208	NR	Illumina [at least 870261] (imputed)	N
1931	chr5	176535205	176535206	rs13177762	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	5q35.3	intergenic	rs13177762-T	0.1374	4E-20		0.0255	[0.02-0.031] unit increase	Affymetrix [18391927] (imputed)	N
1931	chr5	176535208	176535209	rs12654493	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	5q35.3		rs12654493-G	NR	4E-10		0.0514	[0.035-0.067] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1931	chr5	176539211	176539212	rs244730	30217807	Robinson-Cohen C	2018-09-14	J Am Soc Nephrol	Genetic Variants Associated with Circulating Fibroblast Growth Factor 23.	Circulating fibroblast growth factor 23 levels	16,624 European ancestry individuals	4,443 African ancestry individuals	5q35.3	FGFR4, NSD1	rs244730-A	0.2435	1E-7	(EA)	0.026	[0.016-0.036] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1931	chr5	176539285	176539286	rs351864	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cholelithiasis	26,122 European ancestry cases, 461,431 European ancestry controls, 9,305 East Asian ancestry cases, 168,253 East Asian ancestry controls	NA	5q35.3		rs351864-G	NR	3E-10		0.0657	[0.045-0.086] unit decrease	Affymetrix, Illumina [25844936] (imputed)	N
1931	chr5	176539678	176539679	rs244731	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in lean individuals	up to 5,529 European ancestry male individuals, up to 9,753 European ancestry female individuals	NA	5q35.3	NSD1, PREL1D1, RAB34	rs244731-G	0.76	4E-6	(men)	0.102	[0.059-0.145] kg/m2 decrease	Affymetrix, Illumina [at least 188473] (imputed)	N
1931	chr5	176541369	176541370	rs351862	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	5q35.3	FGFR4	rs351862-C	0.885498	3E-9		0.0184288	[0.012-0.024] unit decrease	Affymetrix [NR] (imputed)	N
1932	chr5	176555581	176555581	rs5873567	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	5q35.3	NSD1	rs5873567-GA	0.420053	1E-11		0.015294445	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1932	chr5	176555585	176555585	rs397883141	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	5q35.3		rs397883141-GA	NR	2E-12		0.0152	[0.011-0.019] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
1932	chr5	176559734	176559735	rs10476217	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	5q35.3	Intergenic	rs10476217-G	0.8294	5E-9		0.0151	[0.01-0.02] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1932	chr5	176568558	176568559	rs10041668	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	5q35.3	NR	rs10041668-G	0.423331	2E-15		0.015602	[0.012-0.019] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
1932	chr5	176572769	176572770	rs13153816	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	5q35.3	NR	rs13153816-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
1932	chr5	176576292	176576293	rs11950938	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	5q35.3	NSD1	rs11950938-C	0.971	5E-11		0.061	[0.043-0.079] unit decrease	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
1932	chr5	176577041	176577042	rs144587740	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	5q35.3	NR	rs144587740-?	NR	1E-14				Affymetrix [~ 8270000] (imputed)	N
1932	chr5	176586897	176586898	rs6556304	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	5q35.3		rs6556304-A	NR	2E-80		0.0329	[0.03-0.036] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1932	chr5	176592723	176592724	rs146677409	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5q35.3		rs146677409-?	NR	6E-16				NR [~ 8900000] (imputed)	N
1932	chr5	176603440	176603440	rs529411808	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	5q35.3	NSD1	rs529411808-TC	NR	1E-8		0.0372782	[0.024-0.05] unit decrease	Affymetrix [321114] (imputed)	N
1932	chr5	176603587	176603588	rs72813153	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	5q35.3	NSD1	rs72813153-T	NR	1E-12		0.0311793	[0.023-0.04] unit increase	Affymetrix [323858] (imputed)	N
1932	chr5	176603587	176603588	rs72813153	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	5q35.3	NSD1	rs72813153-T	NR	5E-15		0.0344439	[0.026-0.043] unit increase	Affymetrix [127266] (imputed)	N
1932	chr5	176603587	176603588	rs72813153	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	5q35.3	NSD1	rs72813153-T	NR	2E-10		0.0254826	[0.018-0.033] unit increase	Affymetrix [321114] (imputed)	N
1932	chr5	176603587	176603588	rs72813153	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	5q35.3	NSD1	rs72813153-T	NR	1E-16		0.0359866	[0.027-0.045] unit increase	Affymetrix [321114] (imputed)	N
1932	chr5	176603587	176603588	rs72813153	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	5q35.3	NSD1	rs72813153-T	NR	1E-8		0.025702	[0.017-0.035] unit decrease	Affymetrix [323858] (imputed)	N
1932	chr5	176603587	176603588	rs72813153	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	5q35.3	NSD1	rs72813153-T	NR	4E-11		0.0261432	[0.018-0.034] unit increase	Affymetrix [321016] (imputed)	N
1932	chr5	176603587	176603588	rs72813153	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	5q35.3	NR	rs72813153-?	NR	5E-9				Affymetrix [~ 8270000] (imputed)	N
1932	chr5	176603587	176603588	rs72813153	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	5q35.3	NR	rs72813153-?	NR	2E-27				Affymetrix [~ 8270000] (imputed)	N
1932	chr5	176629295	176629296	rs35535623	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	5q35.3		rs35535623-G	NR	4E-10		0.0178	[0.012-0.023] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
1932	chr5	176637575	176637576	rs28932178	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	High density lipoprotein cholesterol levels	up to 237,050 European ancestry individuals, up to 16,935 African ancestry individuals, up to 30,468 South Asian ancestry individuals, up to 8,287 East Asian ancestry individuals, 5,084 Hispanic individuals	up to 286,268 European and unknown ancestry individuals	5q35.3	NR	rs28932178-C	NR	1E-10		0.016526096	[0.011-0.022] unit increase	Illumina [242289]	N
1932	chr5	176637575	176637576	rs28932178	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	High density lipoprotein cholesterol levels	up to 237,050 European ancestry individuals	NA	5q35.3	NR	rs28932178-C	0.15	4E-9		0.025	unit increase	Illumina [242289]	N
1932	chr5	176653053	176653054	rs114167666	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	5q35.3	NR	rs114167666-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
1932	chr5	176653053	176653054	rs114167666	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	5q35.3		rs114167666-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1932	chr5	176653519	176653520	rs6890580	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	5q35.3	NSD1	rs6890580-?	NR	7E-10		0.024493327	[0.017-0.032] unit increase	Illumina [27896057] (imputed)	N
1932	chr5	176673067	176673068	rs4976642	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	5q35.3		rs4976642-A	NR	1E-15		0.0207	[0.016-0.026] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
1932	chr5	176673067	176673068	rs4976642	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	5q35.3	NSD1	rs4976642-A	0.831576	8E-16		0.023766335	[0.018-0.03] unit increase	Affymetrix [93095623] (imputed)	N
1932	chr5	176673067	176673068	rs4976642	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	5q35.3	NR	rs4976642-A	0.831367	3E-22		0.024419	[0.019-0.029] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1932	chr5	176677563	176677565	rs34022431	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	5q35.3	NSD1, PRELID1, RAB24	rs34022431-G	0.0275613	4E-9		0.04191	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1932	chr5	176677563	176677565	rs34022431	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	5q35.3	NSD1, PRELID1, RAB24	rs34022431-G	0.0275613	2E-10	(females)	0.06013	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1932	chr5	176677563	176677565	rs34022431	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	5q35.3	NSD1, PRELID1, RAB24	rs34022431-G	0.0275613	2E-11		0.0403	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1932	chr5	176677563	176677565	rs34022431	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	5q35.3	NSD1, PRELID1, RAB24	rs34022431-G	0.0275613	2E-10	(females)	0.05722	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1932	chr5	176677563	176677565	rs34022431	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	5q35.3	NSD1, PRELID1, RAB24	rs34022431-G	0.0275613	1E-8	(males)	0.01822	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1932	chr5	176677706	176677707	rs114862400	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	5q35.3	NR	rs114862400-G	NR	5E-9		0.0572	[0.038-0.076] unit increase	Affymetrix [9000000] (imputed)	N
1932	chr5	176679406	176679407	rs4343858	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	5q35.3	NR	rs4343858-G	0.7216	5E-11		0.0295	[0.021-0.038] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1932	chr5	176682589	176682590	rs7724386	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q35.3	NR	rs7724386-G	0.557966	4E-16				Affymetrix, Illumina [23114412] (imputed)	N
1933	chr5	176691278	176691279	rs10037055	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q35.3	NR	rs10037055-G	0.773331	5E-22				Affymetrix, Illumina [23472807] (imputed)	N
1933	chr5	176691278	176691279	rs10037055	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine without aura	7,107 European ancestry cases, 69,427 European ancestry controls	NA	5q35.3	intergenic	rs10037055-?	0.83	5E-6		1.14	[1.08-1.19]	Affymetrix, Illumina [~ 2300000] (imputed)	N
1933	chr5	176694480	176694481	rs10071491	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q35.3	NR	rs10071491-A	0.0296661	2E-13				Affymetrix, Illumina [24588908] (imputed)	N
1933	chr5	176694480	176694481	rs10071491	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	5q35.3	NR	rs10071491-A	0.024612	6E-15		0.0485	[0.036-0.061] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1933	chr5	176705864	176705865	rs76004499	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	5q35.3	NSD1	rs76004499-C	0.9722	3E-8		0.073671	[0.048-0.1] mg/dL decrease	Affymetrix, Illumina [8217339] (imputed)	N
1933	chr5	176723575	176723576	rs75224805	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	5q35.3	NSD1	rs75224805-A	NR	7E-9		0.0460424	[0.03-0.062] unit increase	Affymetrix [321114] (imputed)	N
1933	chr5	176726634	176726635	rs3088050	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	316,772 European ancestry male individuals	NA	5q35.3	NR	rs3088050-A	0.2213	3E-7		0.0104	[0.0065-0.0143] unit increase	NR [~ 27400000] (imputed)	N
1933	chr5	176726634	176726635	rs3088050	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	5q35.3	NSD1	rs3088050-A	0.215	5E-11	(women)	0.0427	[0.03-0.055] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1933	chr5	176726634	176726635	rs3088050	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	5q35.3	NSD1	rs3088050-A	0.215	3E-10	(men)	0.0403	[0.028-0.053] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1933	chr5	176726634	176726635	rs3088050	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	5q35.3	NSD1	rs3088050-A	0.215	1E-12		0.031	[0.022-0.04] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1933	chr5	176726634	176726635	rs3088050	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	5q35.3	NSD1	rs3088050-A	0.2143	6E-13	(EA)	0.0329	[0.024-0.042] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1933	chr5	176726634	176726635	rs3088050	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	5q35.3	NSD1	rs3088050-A	0.2143	5E-11	(EA, men)	0.0448	[0.031-0.058] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1933	chr5	176726634	176726635	rs3088050	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	5q35.3	NSD1	rs3088050-A	0.2179	5E-7	(men)	0.0367	[0.022-0.051] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1933	chr5	176726634	176726635	rs3088050	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	5q35.3	NSD1	rs3088050-A	0.215	3E-10		0.0318	[0.022-0.042] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1933	chr5	176726634	176726635	rs3088050	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	5q35.3	NSD1	rs3088050-A	0.2145	2E-7	(EA, men)	0.0389	[0.024-0.054] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1933	chr5	176726634	176726635	rs3088050	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	5q35.3	NSD1	rs3088050-A	0.2143	3E-10	(EA)	0.0327	[0.023-0.043] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1933	chr5	176726634	176726635	rs3088050	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	5q35.3	NSD1	rs3088050-A	0.2126	9E-8	(women)	0.039	[0.025-0.053] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1933	chr5	176726634	176726635	rs3088050	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	5q35.3	NSD1	rs3088050-?	0.215	6E-12				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1933	chr5	176726634	176726635	rs3088050	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	5q35.3	NSD1	rs3088050-?	0.215	3E-10	(women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1933	chr5	176726634	176726635	rs3088050	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	5q35.3	NSD1	rs3088050-?	0.215	1E-9	(men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1933	chr5	176726634	176726635	rs3088050	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	5q35.3	NSD1	rs3088050-?	0.2143	6E-12	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1933	chr5	176726634	176726635	rs3088050	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	5q35.3	NSD1	rs3088050-?	0.2143	1E-10	(EA, men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1933	chr5	176726634	176726635	rs3088050	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex x age interaction (4df test)	up to 43,776 European ancestry men aged <50, up to 50,526 European ancestry women aged <50, up to 69,944 European ancestry men aged >50, up to 88,129 European ancestry women aged >50	NA	5q35.3	NSD1, UNC5A, HK3, UIMC1, ZNF346, FGFR4, RAB24, PREUD1, MXD3, LMAN2, SLC34A1, PRR7-AS1, PFN3, RGS14, F12, GRK6, PRR7, DDX41, PDLIM7, DBN1, DOK3, FAM193B, TMED9, B4GALT7, LOC202181, FAM153A	rs3088050-A	0.21	1E-8				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1933	chr5	176726634	176726635	rs3088050	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI (age <50)	up to 43,776 European ancestry men, up to 50,526 European ancestry women	NA	5q35.3	NSD1, UNC5A, HK3, UIMC1, ZNF346, FGFR4, RAB24, PREUD1, MXD3, LMAN2, SLC34A1, PRR7-AS1, PFN3, RGS14, F12, GRK6, PRR7, DDX41, PDLIM7, DBN1, DOK3, FAM193B, TMED9, B4GALT7, LOC202181, FAM153A	rs3088050-A	0.016	3E-7	(men)	0.05	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1933	chr5	176726634	176726635	rs3088050	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	5q35.3	NSD1, UNC5A, HK3, UIMC1, ZNF346, FGFR4, RAB24, PREUD1, MXD3, LMAN2, SLC34A1, PRR7-AS1, PFN3, RGS14, F12, GRK6, PRR7, DDX41, PDLIM7, DBN1, DOK3, FAM193B, TMED9, B4GALT7, LOC202181	rs3088050-A	0.21	1E-7		0.0056	units increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1933	chr5	176728399	176728400	rs28419182	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	5q35.3		rs28419182-A	NR	4E-8		0.0125	[0.008-0.017] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
1933	chr5	176728399	176728400	rs28419182	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	5q35.3		rs28419182-A	NR	3E-19		0.018	[0.014-0.022] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
1933	chr5	176728399	176728400	rs28419182	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	5q35.3	LMAN2	rs28419182-A	0.76890625	6E-6	(LMAN2, 9468_8_3)	0.12414711	[0.07-0.178] unit increase	Illumina [> 1000000] (imputed)	N
1933	chr5	176728457	176728458	rs1128287	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	5q35.3	NR	rs1128287-T	0.7773760000000001	2E-9		0.0053864	[0.0034-0.0074] unit increase	Affymetrix [16582909] (imputed)	N
1933	chr5	176728457	176728458	rs1128287	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	5q35.3	NR	rs1128287-T	0.7773760000000001	9E-8		0.00508751	[0.0029-0.0073] unit increase	Affymetrix [16582965] (imputed)	N
1933	chr5	176728877	176728878	rs80237806	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	5q35.3	NR	rs80237806-C	NR	3E-11		0.0407	[0.029-0.053] unit decrease	Affymetrix [9000000] (imputed)	N
1933	chr5	176728877	176728878	rs80237806	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	5q35.3	NR	rs80237806-C	NR	2E-11		0.0392	[0.028-0.051] unit decrease	Affymetrix [9000000] (imputed)	N
1933	chr5	176728877	176728878	rs80237806	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	5q35.3	NR	rs80237806-C	NR	3E-9		0.0348	[0.023-0.046] unit increase	Affymetrix [9000000] (imputed)	N
1933	chr5	176728877	176728878	rs80237806	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	5q35.3	NR	rs80237806-C	NR	6E-12		0.0403	[0.029-0.052] unit increase	Affymetrix [9000000] (imputed)	N
1933	chr5	176730677	176730678	rs9313754	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	5q35.3	RAB24, MXD3	rs9313754-G	NR	6E-12		0.0272562	[0.02-0.035] unit increase	Affymetrix [321114] (imputed)	N
1933	chr5	176730677	176730678	rs9313754	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	5q35.3	NR	rs9313754-?	NR	4E-15				Affymetrix [~ 8270000] (imputed)	N
1933	chr5	176730677	176730678	rs9313754	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	5q35.3	NR	rs9313754-?	NR	2E-25				Affymetrix [~ 8270000] (imputed)	N
1933	chr5	176730774	176730775	rs6879874	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	5q35.3	NR	rs6879874-T	0.724183	2E-9		0.0075198	[0.0048-0.0102] unit increase	Affymetrix [16585854] (imputed)	N
1933	chr5	176730774	176730775	rs6879874	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	5q35.3	NR	rs6879874-T	0.724183	3E-8		0.00772869	[0.0046-0.0108] unit increase	Affymetrix [16585866] (imputed)	N
1933	chr5	176731451	176731452	rs28362590	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glutamine levels	114,751 European ancestry individuals	NA	5q35.3		rs28362590-G	0.245593	5E-8		0.0262054	[0.017-0.036] unit increase	NR [11722792] (imputed)	N
1933	chr5	176731451	176731452	rs28362590	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	5q35.3	PRELID1	rs28362590-T	0.6559	1E-9		0.0209	[0.014-0.028] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1933	chr5	176731451	176731452	rs28362590	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	5q35.3	PRELID1	rs28362590-T	0.4599	2E-6	(East Asian)	0.0273	[0.016-0.039] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1933	chr5	176731451	176731452	rs28362590	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	5q35.3	NR	rs28362590-T	0.6414	9E-6	(women)	0.0218	[0.012-0.031] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1933	chr5	176731451	176731452	rs28362590	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	NA	5q35.3	MXD3	rs28362590-G	0.24629999999999996	9E-10		0.1242	[0.084-0.164] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1933	chr5	176732536	176732537	rs72813180	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	5q35.3	MXD3, PRELID1	rs72813180-G	NR	2E-10		0.0277945	[0.019-0.036] unit increase	Affymetrix [323858] (imputed)	N
1933	chr5	176732536	176732537	rs72813180	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	5q35.3	MXD3, PRELID1	rs72813180-G	NR	2E-12		0.0306981	[0.022-0.039] unit increase	Affymetrix [127266] (imputed)	N
1933	chr5	176732536	176732537	rs72813180	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	5q35.3	MXD3, PRELID1	rs72813180-G	NR	3E-13		0.0313029	[0.023-0.04] unit increase	Affymetrix [321114] (imputed)	N
1933	chr5	176732536	176732537	rs72813180	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	5q35.3	NR	rs72813180-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1933	chr5	176732536	176732537	rs72813180	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	5q35.3	PRELID1	rs72813180-C	0.846053	7E-10		0.0158648	[0.011-0.021] unit increase	NR [13737936] (imputed)	N
1933	chr5	176734647	176734648	rs72813183	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	5q35.3	MXD3	rs72813183-A	0.062	2E-6	(MCP1 )	0.05	[NR] pg/mL increase	Illumina [899892]	N
1933	chr5	176734647	176734648	rs72813183	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	5q35.3	MXD3	rs72813183-A	0.062	2E-6	(Free T3 )	0.05	[NR] pg/mL increase	Illumina [899892]	N
1933	chr5	176735611	176735612	rs111251222	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	5q35.3		rs111251222-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1933	chr5	176735611	176735612	rs111251222	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Anthropometric traits (multi-trait analysis)	4,988 Spanish ancestry individuals	336,107 British ancestry individuals	5q35.3	PRELID1, RAB24, MXD3	rs111251222-?		2E-36				Illumina [9499600] (imputed)	N
1933	chr5	176735611	176735612	rs111251222	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Anthropometric traits	4,988 Spanish ancestry individuals	336,107 British ancestry individuals	5q35.3	PRELID1, RAB24, MXD3	rs111251222-G	0.261	3E-67	(height)	0.03424	[0.03-0.038] unit increase	Illumina [9499600] (imputed)	N
1933	chr5	176737058	176737059	rs7732299	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	5q35.3	MXD3	rs7732299-A	0.024464	5E-9		0.04290264	[0.028-0.057] unit increase	Affymetrix [93095623] (imputed)	N
1933	chr5	176737719	176737720	rs13190036	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	5q35.3		rs13190036-?	NR	8E-11				NR [~ 8900000] (imputed)	N
1933	chr5	176737719	176737720	rs13190036	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	5q35.3	MXD3	rs13190036-G	0.8923	1E-11		0.03930816	[0.028-0.051] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1933	chr5	176737719	176737720	rs13190036	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	5q35.3	MXD3	rs13190036-G	0.8923	3E-13		0.04239853	[0.031-0.054] unit increase	Affymetrix [~ 2500000] (imputed)	N
1933	chr5	176737991	176737993	rs10587485	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	5q35.3	MXD3	rs10587485-C	0.025116	5E-13		0.052741412	[0.038-0.067] unit increase	Affymetrix [93095623] (imputed)	N
1933	chr5	176740243	176740244	rs11949767	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals, at least 88,461 European ancestry individuals	NA	5q35.3	MXD3	rs11949767-A	0.5405	3E-7	(Japanese)	0.0204	[0.013-0.028] unit decrease	Illumina [1986983] (imputed)	N
1933	chr5	176740703	176740704	rs11952102	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals	at least 101,293 European ancestry individuals	5q35.3	MXD3, LMAN2	rs11952102-A	0.448	4E-8	(Japanese)	0.022	[0.014-0.03] unit increase	Illumina [5864938] (imputed)	N
1933	chr5	176740995	176740996	rs6885410	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	5q35.3	Intergenic	rs6885410-A	0.7198	5E-8	(MTAG)	0.0109	[0.007-0.0148] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1933	chr5	176741179	176741180	rs7725769	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	129,405 East Asian ancestry individuals	NA	5q35.3		rs7725769-A	0.443316	4E-9		0.0207154	[0.014-0.028] unit increase	Illumina [13475706] (imputed)	N
1933	chr5	176741179	176741180	rs7725769	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	5q35.3	MXD3	rs7725769-A	NR	3E-8		0.0251323	[0.016-0.034] unit decrease	Affymetrix [323858] (imputed)	N
1933	chr5	176742505	176742506	rs12659737	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	334,944 European ancestry, NR ancestry individuals	NA	5q35.3		rs12659737-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1933	chr5	176742505	176742506	rs12659737	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	5q35.3	MXD3	rs12659737-T	NR	5E-10		0.0265834	[0.018-0.035] unit decrease	Affymetrix [323858] (imputed)	N
1933	chr5	176742505	176742506	rs12659737	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	5q35.3	MXD3	rs12659737-T	NR	6E-11		0.0279899	[0.02-0.036] unit decrease	Affymetrix [127266] (imputed)	N
1933	chr5	176742505	176742506	rs12659737	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	5q35.3	MXD3	rs12659737-C	0.839719	8E-22		0.029011132	[0.023-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
1933	chr5	176742505	176742506	rs12659737	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	5q35.3	MXD3	rs12659737-C	0.839749	1E-25		0.031665057	[0.026-0.038] unit increase	Affymetrix [93095623] (imputed)	N
1933	chr5	176742505	176742506	rs12659737	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	5q35.3	NR	rs12659737-C	0.840065	2E-9		0.0550064	[0.037-0.073] unit decrease	Affymetrix [17914406] (imputed)	N
1933	chr5	176743713	176743714	rs116774292	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	5q35.3	MXD3	rs116774292-G	NR	6E-9		0.0428524	[0.028-0.057] unit increase	Affymetrix [321114] (imputed)	N
1933	chr5	176749927	176749928	rs10463065	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	5q35.3		rs10463065-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1933	chr5	176750687	176750688	rs62397245	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	5q35.3		rs62397245-C	0.776864	1E-8		0.0268252	[0.018-0.036] unit increase	NR [11722792] (imputed)	N
1933	chr5	176750687	176750688	rs62397245	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	5q35.3	LMAN2	rs62397245-C	0.77764	5E-10		0.0149698	[0.01-0.02] unit decrease	Affymetrix [NR] (imputed)	N
1933	chr5	176751058	176751059	rs151014368	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	5q35.3		rs151014368-G	0.7922	4E-8		0.0264954	[0.017-0.036] unit increase	NR [11722792] (imputed)	N
1933	chr5	176751058	176751059	rs151014368	30846698	Dashti HS	2019-03-07	Nat Commun	Genome-wide association study identifies genetic loci for self-reported habitual sleep duration supported by accelerometer-derived estimates.	Sleep duration	446,118 European ancestry individuals	47,180  adults, 10,554 children or adolescents	5q35.3	NR	rs151014368-A	NR	4E-7		0.756	unit increase	Affymetrix [14661600] (imputed)	N
1933	chr5	176757840	176757841	rs35630910	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	5q35.3	LMAN2	rs35630910-C	0.284575	1E-10		0.016009245	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1933	chr5	176757840	176757841	rs35630910	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	5q35.3	LMAN2	rs35630910-C	0.284643	5E-11		0.01620636	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1933	chr5	176767672	176767673	rs530210436	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	5q35.3	NR	rs530210436-?	NR	7E-9				Affymetrix [~ 8270000] (imputed)	N
1933	chr5	176767672	176767673	rs530210436	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	5q35.3	NR	rs530210436-?	NR	7E-18				Affymetrix [~ 8270000] (imputed)	N
1933	chr5	176772026	176772027	rs6891305	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Small vessel stroke	333 Indian ancestry cases, 2,154 Indian ancestry controls	NA	5q35.3		rs6891305-?	NR	6E-6		1.2113118	[1.11460596408807-1.31640797345371]	Illumina [7827597] (imputed)	N
1933	chr5	176772735	176772736	rs4976686	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Anthropometric traits (multi-trait analysis)	4,988 Spanish ancestry individuals	336,107 British ancestry individuals	5q35.3	LMAN2, AC146507.1	rs4976686-?		5E-27				Illumina [9499600] (imputed)	N
1933	chr5	176772735	176772736	rs4976686	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Anthropometric traits	4,988 Spanish ancestry individuals	336,107 British ancestry individuals	5q35.3	LMAN2, AC146507.1	rs4976686-G	0.448	1E-48	(height)	0.02757	[0.024-0.031] unit increase	Illumina [9499600] (imputed)	N
1933	chr5	176779856	176779857	rs10064229	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	5q35.3	LMAN2	rs10064229-A	NR	3E-8		0.0303176	[0.02-0.041] unit decrease	Affymetrix [321114] (imputed)	N
1933	chr5	176780246	176780247	rs35660843	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	5q35.3	LMAN2, RGS14	rs35660843-C	0.2949	9E-10		0.02450671	[0.017-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
1933	chr5	176780544	176780545	rs4131289	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	5q35.3	NR	rs4131289-A	0.31	7E-19		0.0175	[0.014-0.021] unit increase	NR [NR]	N
1933	chr5	176780681	176780682	rs4131290	31993563	Ware EB	2019-11-22	Mayo Clin Proc Innov Qual Outcomes	Genome-wide Association Study of 24-Hour Urinary Excretion of Calcium, Magnesium, and Uric Acid.	Urinary calcium excretion	6,462 European ancestry individuals	NA	5q35.3	LMAN2	rs4131290-A	0.71	4E-6		7.57	NR mg decrease	NR [NR] (imputed)	N
1933	chr5	176781208	176781209	rs7713145	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	5q35.3		rs7713145-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1933	chr5	176781208	176781209	rs7713145	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5q35.3		rs7713145-?	NR	1E-22				NR [~ 8900000] (imputed)	N
1933	chr5	176781208	176781209	rs7713145	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	5q35.3		rs7713145-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1933	chr5	176782217	176782218	rs13153019	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	5q35.3	NR	rs13153019-C	0.24924400000000002	2E-14		0.0242892	[0.018-0.031] unit increase	Affymetrix [16580851] (imputed)	N
1933	chr5	176782217	176782218	rs13153019	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	5q35.3	NR	rs13153019-C	0.24929100000000004	2E-9		0.0177496	[0.012-0.024] unit increase	Affymetrix [16585745] (imputed)	N
1933	chr5	176782217	176782218	rs13153019	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic disease (asthma, hay fever or eczema)	106,772 European ancestry cases, 239,773 European ancestry controls	83,335 cases, 34,934 controls	5q35.3	NR	rs13153019-C	NR	3E-6		1.029	NR	Affymetrix [15688218] (imputed)	N
1933	chr5	176782217	176782218	rs13153019	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	5q35.3	LMAN2, RGS14	rs13153019-C	0.26	1E-8		1.035	[1.02-1.05]	Affymetrix, Illumina [8307659] (imputed)	N
1933	chr5	176784447	176784448	rs4976689	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	5q35.3		rs4976689-G	NR	4E-18		0.015	[0.012-0.018] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
1933	chr5	176784511	176784512	rs4075958	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	5q35.3		rs4075958-A	NR	2E-30		0.0223	[0.019-0.026] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
1933	chr5	176784511	176784512	rs4075958	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	5q35.3		rs4075958-A	NR	2E-23		0.0183	[0.015-0.022] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
1933	chr5	176784511	176784512	rs4075958	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	5q35.3		rs4075958-A	NR	7E-26		0.0198	[0.016-0.024] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
1933	chr5	176784511	176784512	rs4075958	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	5q35.3	RGS14	rs4075958-A	0.262675	9E-29		0.027878968	[0.023-0.033] unit increase	Affymetrix [93095623] (imputed)	N
1933	chr5	176784511	176784512	rs4075958	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	5q35.3	RGS14	rs4075958-A	0.2627	1E-27		0.027387306	[0.022-0.032] unit increase	Affymetrix [93095623] (imputed)	N
1933	chr5	176784511	176784512	rs4075958	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	5q35.3	RGS14	rs4075958-A	0.262676	5E-30		0.028570468	[0.024-0.033] unit increase	Affymetrix [93095623] (imputed)	N
1933	chr5	176784511	176784512	rs4075958	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	5q35.3		rs4075958-?	NR	2E-31				NR [~ 8900000] (imputed)	N
1933	chr5	176784511	176784512	rs4075958	21833088	Sawcer S	2011-08-11	Nature	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	5q35.3	RGS14	rs4075958-A	NR	5E-7		1.09	[1.08-1.11]	Illumina [465434]	N
1933	chr5	176788569	176788570	rs4976646	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Tumor necrosis factor receptor 2 levels	21,758 European ancestry individuals	9,173 individuals	5q35.3		rs4976646-T	0.65	4E-10		0.0526	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1933	chr5	176788569	176788570	rs4976646	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Chronic kidney disease	64,164 European and unknown ancestry cases, 561,055 European and unknown ancestry controls	NA	5q35.3	RGS14	rs4976646-C	0.35	2E-10		1.0535188	[1.04-1.07]	Affymetrix, Illumina [9585923] (imputed)	N
1933	chr5	176788569	176788570	rs4976646	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	5q35.3	RGS14	rs4976646-T	0.6477	1E-19		0.0066	[0.0052-0.008] unit decrease	Affymetrix, Illumina [8176554] (imputed)	N
1933	chr5	176788569	176788570	rs4976646	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Ulcerative colitis	12,366 European and unknown ancestry cases, 33,609 European and unknown ancestry controls	NA	5q35.3	RGS14, SLC34A1	rs4976646-?		4E-8				Illumina [9578670] (imputed)	N
1933	chr5	176788569	176788570	rs4976646	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	5q35.3	RGS14, SLC34A1	rs4976646-?		4E-9				Illumina [9725440] (imputed)	N
1933	chr5	176788569	176788570	rs4976646	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	5q35.3	NR	rs4976646-G	0.3415	3E-9	(EA)	1.0819606	[1.06-1.11]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1933	chr5	176788569	176788570	rs4976646	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	5q35.3	NR	rs4976646-G	0.3415	3E-12	(EA)	1.0757427	[1.06-1.1]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1933	chr5	176788569	176788570	rs4976646	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	5q35.3	NR	rs4976646-G	0.3415	3E-8	(EA)	1.0721266	[1.05-1.1]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1933	chr5	176788569	176788570	rs4976646	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	5q35.3	RGS14	rs4976646-G	0.36	4E-18		1.12		Illumina [161311]	N
1933	chr5	176788621	176788622	rs4976647	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	5q35.3		rs4976647-C	NR	7E-18		0.02	[0.015-0.025] unit increase	Affymetrix, Illumina [20528270] (imputed)	N
1933	chr5	176790161	176790162	rs67111717	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	5q35.3	RGS14	rs67111717-G	NR	3E-21		1.1041	NR	Affymetrix, Illumina [8278136] (imputed)	N
1933	chr5	176792490	176792491	rs6556313	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	5q35.3	NR	rs6556313-G	0.3318	1E-12		0.001649	[0.0012-0.0021] unit increase	Affymetrix [NR] (imputed)	N
1933	chr5	176792490	176792491	rs6556313	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	5q35.3	RGS14	rs6556313-G	0.331564	1E-11		0.015856218	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1933	chr5	176792490	176792491	rs6556313	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	5q35.3	RGS14	rs6556313-G	0.331552	1E-16		0.019359725	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1933	chr5	176792490	176792491	rs6556313	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	5q35.3	NR	rs6556313-G	0.332338	2E-20		0.019467	[0.015-0.024] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
1933	chr5	176792490	176792491	rs6556313	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	5q35.3		rs6556313-?	NR	1E-21				NR [~ 8900000] (imputed)	N
1933	chr5	176792556	176792557	rs11135015	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q35.3	NR	rs11135015-C	0.336348	4E-21				Affymetrix, Illumina [19872809] (imputed)	N
1933	chr5	176792742	176792743	rs11741640	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Urolithiasis	6,638 Japanese ancestry cases, 205,815 Japanese ancestry controls	NA	5q35.3		rs11741640-A	0.249672791	6E-14		1.1681936	[1.121772693-1.216535394]	Illumina [8919992] (imputed)	N
1933	chr5	176792742	176792743	rs11741640	30217807	Robinson-Cohen C	2018-09-14	J Am Soc Nephrol	Genetic Variants Associated with Circulating Fibroblast Growth Factor 23.	Circulating fibroblast growth factor 23 levels	16,624 European ancestry individuals	4,443 African ancestry individuals	5q35.3	RGS14	rs11741640-A	0.2684	2E-16	(EA)	0.039	[0.029-0.049] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1933	chr5	176794190	176794191	rs12654812	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	5q35.3	NR	rs12654812-A	NR	4E-26		0.0265	[0.022-0.031] unit increase	Affymetrix [9000000] (imputed)	N
1933	chr5	176794190	176794191	rs12654812	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	5q35.3	NR	rs12654812-A	NR	2E-11		0.0168	[0.012-0.022] unit increase	Affymetrix [9000000] (imputed)	N
1933	chr5	176794190	176794191	rs12654812	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	5q35.3	NR	rs12654812-A	NR	2E-86		0.0516	[0.047-0.057] unit decrease	Affymetrix [9000000] (imputed)	N
1933	chr5	176794190	176794191	rs12654812	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	5q35.3	NR	rs12654812-A	NR	3E-38		0.0323	[0.027-0.037] unit decrease	Affymetrix [9000000] (imputed)	N
1933	chr5	176794190	176794191	rs12654812	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	5q35.3	NR	rs12654812-A	NR	7E-72		0.0449	[0.04-0.05] unit increase	Affymetrix [9000000] (imputed)	N
1933	chr5	176794190	176794191	rs12654812	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	5q35.3	NR	rs12654812-A	NR	7E-40		0.0331	[0.028-0.038] unit increase	Affymetrix [9000000] (imputed)	N
1933	chr5	176794190	176794191	rs12654812	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	5q35.3	NR	rs12654812-A	NR	5E-13		0.0189	[0.014-0.024] unit increase	Affymetrix [9000000] (imputed)	N
1933	chr5	176794190	176794191	rs12654812	26272126	Oddsson A	2015-08-14	Nat Commun	Common and rare variants associated with kidney stones and biochemical traits.	Kidney stones	5,149 European ancestry cases, 279,870 European ancestry controls (includes non-array genotyped, whole-genome imputed individuals)	NA	5q35.3	SLC34A1	rs12654812-A	0.4184	6E-11		1.18	[NR]	Illumina [28300000] (imputed)	N
1933	chr5	176794190	176794191	rs12654812	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	5q35.3	DOK3	rs12654812-A	0.335	2E-8		1.068	[1.036-1.10]	Affymetrix, Illumina [1230000] (imputed)	N
1933	chr5	176794190	176794191	rs12654812	22797727	Okada Y	2012-07-15	Nat Genet	Meta-analysis identifies multiple loci associated with kidney function-related traits in east Asian populations.	Renal function-related traits (sCR)	42,257 East Asian, South Asian, and South East Asian ancestry individuals	19,662 East Asian ancestry individuals	5q35.3	RGS14	rs12654812-A	0.36	5E-7		0.0036	[0.0022-0.0050] mg/dl increase	Affymetrix, Illumina [2353587] (imputed)	N
1933	chr5	176794190	176794191	rs12654812	22797727	Okada Y	2012-07-15	Nat Genet	Meta-analysis identifies multiple loci associated with kidney function-related traits in east Asian populations.	Renal function-related traits (eGRFcrea)	42,451 East Asian, South Asian, and South East Asian ancestry individuals	19,636 East Asian ancestry individuals	5q35.3	RGS14	rs12654812-A	0.36	2E-7		0.0042	[0.0026-0.0058] ml/min/1.73m2 decrease	Affymetrix, Illumina [2353587] (imputed)	N
1933	chr5	176797342	176797343	rs4074995	27927781	Robinson-Cohen C	2016-12-07	J Am Soc Nephrol	Genetic Variants Associated with Circulating Parathyroid Hormone.	Serum parathyroid hormone levels	up to 22,653 European ancestry individuals.	6,502 European ancestry individuals.	5q35.3	SLC34A1, RGS14	rs4074995-G	0.71	3E-23		0.03	[0.024-0.036] unit increase	Affymetrix, Illumina, Perlegen [8559187] (imputed)	N
1933	chr5	176797342	176797343	rs4074995	24068962	O'Seaghdha CM	2013-09-19	PLoS Genet	Meta-analysis of genome-wide association studies identifies six new Loci for serum calcium concentrations.	Calcium levels	39,400 European ancestry individuals	Up to 21,679 European ancestry individuals	5q35.3	RGS14, SLC34A1	rs4074995-A	0.28	5E-6		0.013	[0.0071-0.0189] unit increase	Affymetrix, Illumina [2500000] (imputed)	N
1933	chr5	176798039	176798040	rs56235845	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	5q35.3	RGS14	rs56235845-G		7E-16		0.018	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
1933	chr5	176798039	176798040	rs56235845	31729369	Howles SA	2019-11-15	Nat Commun	Genetic variants of calcium and vitamin D metabolism in kidney stone disease.	Kidney stones	6,536 British ancestry cases, 5,587 Japanese ancestry cases, 388,508 British ancestry controls, 28,870 Japanese ancestry controls	NA	5q35.3	SLC34A1	rs56235845-G	0.33	3E-21		1.16	[1.13-1.20]	Affymetrix, Illumina [~ 5000000] (imputed)	N
1933	chr5	176798039	176798040	rs56235845	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	5q35.3	RGS14	rs56235845-G	0.3292	1E-9		0.02294702	[0.016-0.03] unit increase	Affymetrix [~ 2500000] (imputed)	N
1933	chr5	176798039	176798040	rs56235845	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	5q35.3	RGS14	rs56235845-G	0.3292	9E-11		0.02442433	[0.017-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
1933	chr5	176798060	176798070	rs765574776	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	5q35.3	NR	rs765574776-CG	0.26405999999999996	4E-9		0.00879877	[0.0059-0.0117] unit increase	Affymetrix [16578495] (imputed)	N
1933	chr5	176798305	176798306	rs11746443	30975718	Tanikawa C	2019-04-11	J Am Soc Nephrol	Novel Risk Loci Identified in a Genome-Wide Association Study of Urolithiasis in a Japanese Population.	Urolithiasis	11,130 Japanese ancestry cases, 187,639 Japanese ancestry controls	2,289 Japanese ancestry cases, 3,817 Japanese ancestry controls	5q35.3	RGS14	rs11746443-A	NR	2E-19		1.1494253	[NR]	Illumina [6603247] (imputed)	N
1933	chr5	176798305	176798306	rs11746443	22396660	Urabe Y	2012-03-01	PLoS Genet	A genome-wide association study of nephrolithiasis in the Japanese population identifies novel susceptible Loci at 5q35.3, 7p14.3, and 13q14.1.	Nephrolithiasis	904 Japanese ancestry cases, 7,471 Japanese ancestry controls	4,892 Japanese ancestry cases, 9,873 Japanese ancestry controls	5q35.3	RGS14, PFN3, SLC34A1, F12	rs11746443-?	NR	9E-12		1.19	[1.13-1.24]	Illumina [556249]	N
1933	chr5	176799991	176799992	rs10051765	33203707	Zheng JS	2020-11-17	Diabetes Care	Plasma Vitamin C and Type 2 Diabetes: Genome-Wide Association Study and Mendelian Randomization Analysis in European Populations.	Vitamin C levels	52,018 European ancestry individuals	NA	5q35.3	RGS14	rs10051765-C	0.342	4E-9		0.039	[0.025-0.053] unit increase	Affymetrix, Illumina [up to 7933258] (imputed)	N
1933	chr5	176799991	176799992	rs10051765	31729369	Howles SA	2019-11-15	Nat Commun	Genetic variants of calcium and vitamin D metabolism in kidney stone disease.	Kidney stones	6,536 British ancestry cases, 388,508 British ancestry controls	NA	5q35.3	SLC34A1	rs10051765-C	0.33	8E-15		1.16	[1.11-1.20]	Affymetrix [~ 8400000] (imputed)	N
1933	chr5	176800360	176800361	rs11748297	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Urolithiasis	6,223 European ancestry cases, 482,123 European ancestry controls, 11,699 East Asian ancestry cases, 167,027 East Asian ancestry controls	NA	5q35.3		rs11748297-A	NR	2E-31		0.1498	[0.12-0.17] unit increase	Affymetrix, Illumina [25845211] (imputed)	N
1933	chr5	176800360	176800361	rs11748297	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Fibroblast growth factor 23 levels	21,758 European ancestry individuals	9,173 individuals	5q35.3		rs11748297-A	0.29	9E-20		0.0831	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1933	chr5	176800360	176800361	rs11748297	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q35.3	NR	rs11748297-A	0.26282	1E-39				Affymetrix, Illumina [24332387] (imputed)	N
1933	chr5	176800360	176800361	rs11748297	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	5q35.3	NR	rs11748297-A	0.271482	8E-34		0.025583	[0.021-0.03] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
1933	chr5	176800360	176800361	rs11748297	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q35.3	NR	rs11748297-A	0.263108	2E-38				Affymetrix, Illumina [24653286] (imputed)	N
1933	chr5	176800360	176800361	rs11748297	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	5q35.3	NR	rs11748297-A	0.271777	1E-34		0.025825	[0.022-0.03] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
1933	chr5	176800360	176800361	rs11748297	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q35.3	NR	rs11748297-A	0.263949	2E-42				Affymetrix, Illumina [24558453] (imputed)	N
1933	chr5	176800360	176800361	rs11748297	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	5q35.3	NR	rs11748297-A	0.271642	1E-37		0.027022	[0.023-0.031] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
1933	chr5	176806635	176806636	rs35716097	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Phosphorus levels	42,793 Japanese ancestry individuals	NA	5q35.3	RGS14, SLC34A1	rs35716097-?	NR	2E-23		0.07311	[0.059-0.087] unit decrease novel	Illumina [6108953] (imputed)	N
1933	chr5	176806635	176806636	rs35716097	27588450	Mahajan A	2016-09-01	Am J Hum Genet	Trans-ethnic Fine Mapping Highlights Kidney-Function Genes Linked to Salt Sensitivity.	Glomerular filtration rate	23,553 European ancestry individuals, 23,536 Japanese individuals, 16,325 Hispanic individuals, 8,224 African American individuals	NA	5q35.3	SLC34A1	rs35716097-T	NR	2E-17		1.097	[0.85-1.35] unit decrease	Affymetrix, Illumina [at least 6581000] (imputed)	N
1933	chr5	176806635	176806636	rs35716097	27588450	Mahajan A	2016-09-01	Am J Hum Genet	Trans-ethnic Fine Mapping Highlights Kidney-Function Genes Linked to Salt Sensitivity.	Glomerular filtration rate	23,553 European ancestry individuals, 23,536 Japanese individuals, 16,325 Hispanic individuals, 8,224 African American individuals	NA	5q35.3	SLC34A1	rs35716097-T	0.33	4E-9	(Japanese)	1.905	[1.27-2.54] unit decrease	Affymetrix, Illumina [at least 6581000] (imputed)	N
1933	chr5	176806635	176806636	rs35716097	27588450	Mahajan A	2016-09-01	Am J Hum Genet	Trans-ethnic Fine Mapping Highlights Kidney-Function Genes Linked to Salt Sensitivity.	Glomerular filtration rate	23,553 European ancestry individuals, 23,536 Japanese individuals, 16,325 Hispanic individuals, 8,224 African American individuals	NA	5q35.3	SLC34A1	rs35716097-T	0.3	6E-7	(EA)	0.897	[0.55-1.25] unit decrease	Affymetrix, Illumina [at least 6581000] (imputed)	N
1933	chr5	176807196	176807197	rs12659266	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Glomerular filtration rate	143,658 Japanese ancestry individuals	NA	5q35.3	RGS14, SLC34A1	rs12659266-?	NR	3E-16		0.03547	[0.027-0.044] unit decrease novel	Illumina [6108953] (imputed)	N
1933	chr5	176813403	176813404	rs3812036	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	150,266 East Asian ancestry individuals	NA	5q35.3		rs3812036-T	0.252646	5E-20		0.0303705	[0.024-0.037] unit increase	Illumina [13478778] (imputed)	N
1933	chr5	176813403	176813404	rs3812036	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	5q35.3	SLC34A1	rs3812036-T	0.2581	3E-114		0.0065	[0.0057-0.0073] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
1933	chr5	176813403	176813404	rs3812036	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	5q35.3	SLC34A1	rs3812036-T	0.263	2E-103		0.0069	[0.0061-0.0077] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
1933	chr5	176813403	176813404	rs3812036	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	165,726 East Asian ancestry individuals	NA	5q35.3	SLC34A1	rs3812036-T	0.242	4E-10		0.005	[0.0034-0.0066] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
1933	chr5	176813403	176813404	rs3812036	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Chronic kidney disease	64,164 European and unknown ancestry cases, 561,055 European and unknown ancestry controls	NA	5q35.3	SLC34A1	rs3812036-T	0.26	1E-12		1.0684	[1.0491-1.088]	Affymetrix, Illumina [9585923] (imputed)	N
1933	chr5	176813403	176813404	rs3812036	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	5q35.3	SLC34A1	rs3812036-C	0.7629	6E-52		15.166	NR z score increase	Illumina [26237160] (imputed)	N
1933	chr5	176813403	176813404	rs3812036	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	5q35.3	RGS14, SLC34A1	rs3812036-T	0.248	1E-32		0.801	[0.58-1.02] ml/min/1.73m2 decrease	Affymetrix, Illumina [at least 5248638] (imputed)	N
1933	chr5	176813403	176813404	rs3812036	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Creatinine levels	142,097 Japanese ancestry individuals	NA	5q35.3	SLC34A1	rs3812036-?	NR	7E-17		0.03549	[0.027-0.044] unit increase novel	Illumina [6108953] (imputed)	N
1933	chr5	176813403	176813404	rs3812036	28452372	Gorski M	2017-04-28	Sci Rep	1000 Genomes-based meta-analysis identifies 10 novel loci for kidney function.	Glomerular filtration rate (creatinine)	110,517 European ancestry individuals		5q35.3	SLC34A1	rs3812036-T	NR	9E-19		0.0102	[0.008-0.0124] unit decrease	Affymetrix, Illumina [up to 10971307] (imputed)	N
1933	chr5	176813403	176813404	rs3812036	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	Creatinine levels	16,347 British ancestry from 6863 families.	NA	5q35.3	SLC34A1	rs3812036-T	0.2301	1E-10		0.09276888	[0.065-0.121] mg/dl increase	Illumina [24111857] (imputed)	N
1933	chr5	176814655	176814656	rs33921462	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in non-diabetics	152,624 European ancestry individuals, 36,369 African American individuals	NA	5q35.3	SLC34A1	rs33921462-A	0.25	2E-37		0.805	[0.68-0.93] unit decrease	Affymetrix [NR] (imputed)	N
1933	chr5	176815123	176815124	rs5030873	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Creatinine levels	110,051 European ancestry individuals	NA	5q35.3		rs5030873-T	0.68651	1E-24		0.0391816	[0.032-0.047] unit decrease	NR [11722792] (imputed)	N
1933	chr5	176815123	176815124	rs5030873	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Creatinine levels	69,591 European ancestry individuals	NA	5q35.3	SLC34A1	rs5030873-C	0.319248	1E-20		0.061138	[0.049-0.073] unit increase	Illumina [24961484] (imputed)	N
1933	chr5	176815765	176815766	rs35610898	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	5q35.3		rs35610898-C	NR	2E-99		0.0367	[0.033-0.04] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
1933	chr5	176815765	176815766	rs35610898	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	5q35.3		rs35610898-C	NR	3E-30		0.0234	[0.019-0.027] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
1933	chr5	176815765	176815766	rs35610898	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	142,940 East Asian ancestry individuals	NA	5q35.3	NR	rs35610898-G	0.691828	2E-12		0.028569	[0.021-0.037] SD units decrease	Affymetrix, Illumina [16289021] (imputed)	N
1933	chr5	176815765	176815766	rs35610898	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	5q35.3	SLC34A1	rs35610898-C	0.323	1E-56		0.0056	[0.005-0.0062] unit decrease	Affymetrix [NR] (imputed)	N
1933	chr5	176815879	176815880	rs56297224	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	153,512 East Asian ancestry individuals	NA	5q35.3		rs56297224-A	0.308331	2E-11		0.0226462	[0.016-0.029] unit increase	Illumina [13479135] (imputed)	N
1933	chr5	176815879	176815880	rs56297224	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	153,015 East Asian ancestry individuals	NA	5q35.3		rs56297224-A	0.308315	1E-9		0.0204649	[0.014-0.027] unit increase	Illumina [13478961] (imputed)	N
1933	chr5	176815879	176815880	rs56297224	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	5q35.3	SLC34A1	rs56297224-A	0.26	4E-8				NR [> 9500000] (imputed)	N
1933	chr5	176815879	176815880	rs56297224	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	5q35.3	SLC34A1	rs56297224-A	0.25827599999999995	2E-8		1.0390959	[1.02518477944578-1.05319570733018]	NR [9572556] (imputed)	N
1934	chr5	176817142	176817143	rs3812035	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in diabetes	70,762 European ancestry individuals, 20,967 African American individuals	NA	5q35.3	SLC34A1	rs3812035-T	0.303	1E-10		0.606	[0.42-0.79] unit decrease	Affymetrix [NR] (imputed)	N
1934	chr5	176817582	176817583	rs55785724	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	149,861 East Asian ancestry individuals	NA	5q35.3	NR	rs55785724-A	0.695811	3E-11		0.026392	[0.019-0.034] SD units decrease	Affymetrix, Illumina [16709126] (imputed)	N
1934	chr5	176817635	176817636	rs6420094	26831199	Pattaro C	2016-01-21	Nat Commun	Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function.	Glomerular filtration rate (creatinine)	133,413 European ancestry individuals	42,166 European ancestry individuals, up to 16,471 African ancestry individuals, up to 42,296 Asian ancestry individuals	5q35.3	SLC34A1	rs6420094-A	0.66	5E-22	(EA)	0.0096	[0.0076-0.0116] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1934	chr5	176817635	176817636	rs6420094	26831199	Pattaro C	2016-01-21	Nat Commun	Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function.	Chronic kidney disease	12,385 European ancestry cases, 104,780 European ancestry controls	33,972 European ancestry individuals	5q35.3	SLC34A1	rs6420094-G	0.34	4E-9		1.098901	[1.06-1.14]	Affymetrix, Illumina [~ 2500000] (imputed)	N
1934	chr5	176817635	176817636	rs6420094	20383146	Kottgen A	2010-04-11	Nat Genet	New loci associated with kidney function and chronic kidney disease.	Chronic kidney disease	Up to 67,093 European ancestry individuals	Up to 22,982 European ancestry individuals	5q35.3	RGS14, PRR7, PFN3, GRK6, SLC34A1, F12, LMAN2	rs6420094-G	0.34	1E-14	(eGFRcrea)	0.01	[0.007-0.015] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1934	chr5	176819251	176819252	rs6556314	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Citrate levels	115,068 European ancestry individuals	NA	5q35.3		rs6556314-C	0.686752	2E-9		0.0263029	[0.018-0.035] unit decrease	NR [11722792] (imputed)	N
1934	chr5	176819251	176819252	rs6556314	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Urolithiasis	11,699 East Asian ancestry cases, 167,027 East Asian ancestry controls	NA	5q35.3		rs6556314-T	0.306737551	8E-18		0.13324693	[0.1-0.16] unit increase	Illumina [13429980] (imputed)	N
1934	chr5	176819251	176819252	rs6556314	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	150,708 East Asian ancestry individuals	NA	5q35.3	NR	rs6556314-C	0.694603	4E-12		0.02754	[0.02-0.035] SD units decrease	Affymetrix, Illumina [16709798] (imputed)	N
1934	chr5	176822511	176822512	rs6862195	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	5q35.3	SLC34A1	rs6862195-T	0.3302	6E-60	(EA)	0.0061	[0.0053-0.0069] unit decrease	Affymetrix [NR] (imputed)	N
1934	chr5	176824136	176824137	rs7447593	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Red blood cell count	108,794 Japanese ancestry individuals	NA	5q35.3	SLC34A1	rs7447593-?	NR	7E-10		0.02862	[0.02-0.038] unit increase novel	Illumina [6108953] (imputed)	N
1934	chr5	176824136	176824137	rs7447593	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Hematocrit	108,757 Japanese ancestry individuals	NA	5q35.3	SLC34A1	rs7447593-?	NR	1E-8		0.02644	[0.017-0.036] unit increase novel	Illumina [6108953] (imputed)	N
1934	chr5	176824136	176824137	rs7447593	27915449	Corre T	2016-12-03	Pflugers Arch	Common variants in CLDN14 are associated with differential excretion of magnesium over calcium in urine.	Urinary electrolytes (magnesium/calcium ratio)	7,498 European ancestry individuals, 1,541 Val Borbera (founder/genetic isolated) individuals, 281 Carlantino (founder/genetic isolated) individuals	NA	5q35.3	SLC34A1	rs7447593-C	0.635	6E-9		0.1086	[0.072-0.145] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1934	chr5	176830626	176830627	rs17876032	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FZD10	5,345 Icelandic ancestry individuals	NA	5q35.3		rs17876032-G	0.3778	2E-12		0.127081	[0.092-0.162] unit decrease	Illumina [7506463] (imputed)	N
1934	chr5	176831118	176831119	rs17876031	31014085	Welsh P	2019-04-24	Circulation	Cardiac Troponin T and Troponin I in the General Population: Comparing and Contrasting their Genetic Determinants and Associations with Outcomes.	Cardiac troponin-I levels	14,579 European ancestry individuals	NA	5q35.3	F12, GRK6	rs17876031-G		2E-7		0.048	[NR] unit increase	Illumina [24111857] (imputed)	N
1934	chr5	176831118	176831119	rs17876031	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Stem cell growth factor beta levels	3,682 Finnish ancestry individuals	NA	5q35.3	NR	rs17876031-G		2E-9		0.1514	[0.1-0.2] SD units increase	NR [10700000] (imputed)	N
1934	chr5	176831588	176831589	rs17876047	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	5q35.3	NR	rs17876047-A	NR	1E-11		0.0467	[0.033-0.06] unit decrease	Affymetrix [9000000] (imputed)	N
1934	chr5	176831588	176831589	rs17876047	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	5q35.3	NR	rs17876047-A	NR	4E-11		0.0455	[0.032-0.059] unit increase	Affymetrix [9000000] (imputed)	N
1934	chr5	176833355	176833356	rs17876046	33742053	Wells HRR	2021-03-19	Sci Rep	Genome-wide association study suggests that variation at the RCOR1 locus is associated with tinnitus in UK Biobank.	Tinnitus	91,424 British ancestry individuals	NA	5q35.3	F12, GRK6	rs17876046-G	0.99	2E-7		0.288	[0.18-0.4] unit decrease	Affymetrix [9740198] (imputed)	N
1934	chr5	176833361	176833362	rs17876044	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Age at menopause	approximately 143,000 European ancestry individuals	NA	5q35.3		rs17876044-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1934	chr5	176836531	176836532	rs1801020	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycoprotein acetyls levels	115,082 European ancestry individuals	NA	5q35.3		rs1801020-A	0.252839	2E-8		0.0266138	[0.017-0.036] unit decrease	NR [11722792] (imputed)	N
1934	chr5	176836531	176836532	rs1801020	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TMEM87B	5,357 Icelandic ancestry individuals	NA	5q35.3		rs1801020-A	0.2483	9E-16		0.173765	[0.13-0.22] unit increase	Illumina [7506463] (imputed)	N
1934	chr5	176836531	176836532	rs1801020	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SIRT5	5,346 Icelandic ancestry individuals	NA	5q35.3		rs1801020-A	0.2483	4E-18		0.173642	[0.13-0.21] unit decrease	Illumina [7506463] (imputed)	N
1934	chr5	176836531	176836532	rs1801020	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PLXDC1	5,357 Icelandic ancestry individuals	NA	5q35.3		rs1801020-A	0.2483	5E-52		0.31577	[0.28-0.36] unit increase	Illumina [7506463] (imputed)	N
1934	chr5	176836531	176836532	rs1801020	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PDCL2	5,342 Icelandic ancestry individuals	NA	5q35.3		rs1801020-A	0.2483	2E-12		0.1424	[0.1-0.18] unit decrease	Illumina [7506463] (imputed)	N
1934	chr5	176836531	176836532	rs1801020	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LGMN	5,367 Icelandic ancestry individuals	NA	5q35.3		rs1801020-A	0.2483	3E-13		0.161368	[0.12-0.2] unit decrease	Illumina [7506463] (imputed)	N
1934	chr5	176836531	176836532	rs1801020	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LAMTOR3	5,354 Icelandic ancestry individuals	NA	5q35.3		rs1801020-A	0.2483	3E-15		0.165575	[0.12-0.21] unit decrease	Illumina [7506463] (imputed)	N
1934	chr5	176836531	176836532	rs1801020	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ITIH4	5,347 Icelandic ancestry individuals	NA	5q35.3		rs1801020-A	0.2483	7E-34		0.241445	[0.2-0.28] unit increase	Illumina [7506463] (imputed)	N
1934	chr5	176836531	176836532	rs1801020	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GPNMB	5,365 Icelandic ancestry individuals	NA	5q35.3		rs1801020-A	0.2483	2E-12		0.152125	[0.11-0.19] unit increase	Illumina [7506463] (imputed)	N
1934	chr5	176836531	176836532	rs1801020	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ETHE1	5,354 Icelandic ancestry individuals	NA	5q35.3		rs1801020-A	0.2483	2E-25		0.21834	[0.18-0.26] unit increase	Illumina [7506463] (imputed)	N
1934	chr5	176836531	176836532	rs1801020	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DPEP2	5,359 Icelandic ancestry individuals	NA	5q35.3		rs1801020-A	0.2483	7E-21		0.197296	[0.16-0.24] unit increase	Illumina [7506463] (imputed)	N
1934	chr5	176836531	176836532	rs1801020	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DCK	5,351 Icelandic ancestry individuals	NA	5q35.3		rs1801020-A	0.2483	4E-12		0.146093	[0.1-0.19] unit decrease	Illumina [7506463] (imputed)	N
1934	chr5	176836531	176836532	rs1801020	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CDH15	5,345 Icelandic ancestry individuals	NA	5q35.3		rs1801020-A	0.2483	1E-43		0.279457	[0.24-0.32] unit increase	Illumina [7506463] (imputed)	N
1934	chr5	176836531	176836532	rs1801020	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CAPN1;CAPNS1	5,358 Icelandic ancestry individuals	NA	5q35.3		rs1801020-A	0.2483	4E-12		0.143558	[0.1-0.18] unit increase	Illumina [7506463] (imputed)	N
1934	chr5	176836531	176836532	rs1801020	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ATP13A1	5,352 Icelandic ancestry individuals	NA	5q35.3		rs1801020-A	0.2483	5E-31		0.235161	[0.2-0.27] unit increase	Illumina [7506463] (imputed)	N
1934	chr5	176836531	176836532	rs1801020	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ADM	5,353 Icelandic ancestry individuals	NA	5q35.3		rs1801020-A	0.2483	2E-15		0.164625	[0.12-0.21] unit increase	Illumina [7506463] (imputed)	N
1934	chr5	176836531	176836532	rs1801020	34668383	Leskela J	2021-10-20	J Am Heart Assoc	Genetic Profile of Endotoxemia Reveals an Association With Thromboembolism and Stroke.	Serum lipopolysaccharide activity	11,296 European ancestry individuals	NA	5q35.3	NR	rs1801020-G	0.7477	7E-65		0.2588	[0.23-0.29] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1934	chr5	176836531	176836532	rs1801020	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	5q35.3	F12	rs1801020-A	0.342206	5E-35	(valylleucine)	0.305	[0.26-0.35] unit decrease	Illumina [13039987] (imputed)	N
1934	chr5	176836531	176836532	rs1801020	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	5q35.3	F12	rs1801020-A	0.342206	2E-45	(phenylalanylglycine)	0.343	[0.3-0.39] unit decrease	Illumina [13039987] (imputed)	N
1934	chr5	176836531	176836532	rs1801020	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	5q35.3	F12	rs1801020-A	0.342206	2E-22	(leucylglycine)	0.24	[0.19-0.29] unit decrease	Illumina [13039987] (imputed)	N
1934	chr5	176836531	176836532	rs1801020	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	1,509 European ancestry individuals	5q35.3	F12	rs1801020-A	0.342206	5E-35	(valylleucine)	0.305	[0.26-0.35] unit decrease	Illumina [13039987] (imputed)	N
1934	chr5	176836531	176836532	rs1801020	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	1,509 European ancestry individuals	5q35.3	F12	rs1801020-A	0.342206	2E-45	(phenylalanylglycine)	0.343	[0.3-0.39] unit decrease	Illumina [13039987] (imputed)	N
1934	chr5	176836531	176836532	rs1801020	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	1,509 European ancestry individuals	5q35.3	F12	rs1801020-A	0.342206	2E-22	(leucylglycine)	0.24	[0.19-0.29] unit decrease	Illumina [13039987] (imputed)	N
1934	chr5	176836531	176836532	rs1801020	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5q35.3	F12	rs1801020-G	0.75	5E-128	(Superoxide dismutase [Mn], mitochondrial, SOD2.5008.51.1)	0.63	[0.57-0.69] unit increase	Affymetrix [10572788] (imputed)	N
1934	chr5	176836531	176836532	rs1801020	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5q35.3	F12	rs1801020-G	0.75	4E-15	(Cadherin-15, CDH15.11215.6.3)	0.22	[0.16-0.28] unit decrease	Affymetrix [10572788] (imputed)	N
1934	chr5	176836531	176836532	rs1801020	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5q35.3	F12	rs1801020-G	0.75	2E-20	(Glucosidase 2 subunit beta, PRKCSH.5687.5.3)	0.26	[0.2-0.32] unit increase	Affymetrix [10572788] (imputed)	N
1934	chr5	176836531	176836532	rs1801020	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Activated partial thromboplastin time	37,767 Japanese ancestry individuals	NA	5q35.3	F12	rs1801020-?	NR	5E-373		0.3129	[0.3-0.33] unit decrease novel	Illumina [6108953] (imputed)	N
1934	chr5	176836531	176836532	rs1801020	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-16 levels	3,483 Finnish ancestry individuals	NA	5q35.3	NR	rs1801020-G		5E-10		0.1733	[0.12-0.23] SD units decrease	NR [10700000] (imputed)	N
1934	chr5	176837317	176837318	rs34097461	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5q35.3	NR	rs34097461-C	0.787	2E-71	(Superoxide dismutase [Mn], mitochondrial, SOD2.5008.51.1)	0.6	[0.54-0.66] unit increase	Affymetrix [10572788] (imputed)	N
1934	chr5	176839889	176839890	rs2731674	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TPMT	5,341 Icelandic ancestry individuals	NA	5q35.3		rs2731674-T	0.2484	2E-13		0.138843	[0.1-0.18] unit decrease	Illumina [7506463] (imputed)	N
1934	chr5	176839889	176839890	rs2731674	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein THBS1	5,335 Icelandic ancestry individuals	NA	5q35.3		rs2731674-T	0.2484	3E-14		0.156249	[0.12-0.2] unit decrease	Illumina [7506463] (imputed)	N
1934	chr5	176839889	176839890	rs2731674	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SOD2	5,356 Icelandic ancestry individuals	NA	5q35.3		rs2731674-T	0.2484	2E-151		0.52799	[0.49-0.57] unit decrease	Illumina [7506463] (imputed)	N
1934	chr5	176839889	176839890	rs2731674	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SERPINA5	5,356 Icelandic ancestry individuals	NA	5q35.3		rs2731674-T	0.2484	1E-41		0.279534	[0.24-0.32] unit increase	Illumina [7506463] (imputed)	N
1934	chr5	176839889	176839890	rs2731674	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RAET1L	5,333 Icelandic ancestry individuals	NA	5q35.3		rs2731674-T	0.2484	5E-17		0.166323	[0.13-0.21] unit decrease	Illumina [7506463] (imputed)	N
1934	chr5	176839889	176839890	rs2731674	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PTHLH	5,359 Icelandic ancestry individuals	NA	5q35.3		rs2731674-T	0.2484	4E-18		0.179366	[0.14-0.22] unit increase	Illumina [7506463] (imputed)	N
1934	chr5	176839889	176839890	rs2731674	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MRPL58	5,353 Icelandic ancestry individuals	NA	5q35.3		rs2731674-T	0.2484	1E-45		0.295536	[0.25-0.34] unit increase	Illumina [7506463] (imputed)	N
1934	chr5	176839889	176839890	rs2731674	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LGALS7	5,347 Icelandic ancestry individuals	NA	5q35.3		rs2731674-T	0.2484	7E-18		0.175512	[0.14-0.22] unit decrease	Illumina [7506463] (imputed)	N
1934	chr5	176839889	176839890	rs2731674	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LEAP2	5,368 Icelandic ancestry individuals	NA	5q35.3		rs2731674-T	0.2484	2E-104		0.458541	[0.42-0.5] unit increase	Illumina [7506463] (imputed)	N
1934	chr5	176839889	176839890	rs2731674	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein KLKB1	5,364 Icelandic ancestry individuals	NA	5q35.3		rs2731674-T	0.2484	6E-23		0.204842	[0.16-0.25] unit decrease	Illumina [7506463] (imputed)	N
1934	chr5	176839889	176839890	rs2731674	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein F9	5,367 Icelandic ancestry individuals	NA	5q35.3		rs2731674-T	0.2484	2E-63		0.364563	[0.32-0.41] unit increase	Illumina [7506463] (imputed)	N
1934	chr5	176839889	176839890	rs2731674	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein F9	5,366 Icelandic ancestry individuals	NA	5q35.3		rs2731674-T	0.2484	3E-46		0.310539	[0.27-0.35] unit increase	Illumina [7506463] (imputed)	N
1934	chr5	176839889	176839890	rs2731674	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DEFB113	5,364 Icelandic ancestry individuals	NA	5q35.3		rs2731674-T	0.2484	4E-64		0.363616	[0.32-0.41] unit decrease	Illumina [7506463] (imputed)	N
1934	chr5	176839889	176839890	rs2731674	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CFC1	5,361 Icelandic ancestry individuals	NA	5q35.3		rs2731674-T	0.2484	1E-25		0.225149	[0.18-0.27] unit decrease	Illumina [7506463] (imputed)	N
1934	chr5	176839889	176839890	rs2731674	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CD63	5,352 Icelandic ancestry individuals	NA	5q35.3		rs2731674-T	0.2484	1E-19		0.188602	[0.15-0.23] unit decrease	Illumina [7506463] (imputed)	N
1934	chr5	176839889	176839890	rs2731674	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ARL1	5,351 Icelandic ancestry individuals	NA	5q35.3		rs2731674-T	0.2484	6E-12		0.141789	[0.1-0.18] unit decrease	Illumina [7506463] (imputed)	N
1934	chr5	176839889	176839890	rs2731674	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein APLP2	5,360 Icelandic ancestry individuals	NA	5q35.3		rs2731674-T	0.2484	8E-12		0.147919	[0.11-0.19] unit decrease	Illumina [7506463] (imputed)	N
1934	chr5	176839889	176839890	rs2731674	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ANP32B	5,366 Icelandic ancestry individuals	NA	5q35.3		rs2731674-T	0.2484	4E-21		0.205864	[0.16-0.25] unit increase	Illumina [7506463] (imputed)	N
1934	chr5	176839889	176839890	rs2731674	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ALDH1A3	5,358 Icelandic ancestry individuals	NA	5q35.3		rs2731674-T	0.2484	7E-18		0.184286	[0.14-0.23] unit decrease	Illumina [7506463] (imputed)	N
1934	chr5	176839889	176839890	rs2731674	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5q35.3	F12	rs2731674-G	0.753	9E-13	(Progonadoliberin-1, GNRH1.5627.53.3)	0.2	[0.14-0.26] unit decrease	Affymetrix [10572788] (imputed)	N
1934	chr5	176839889	176839890	rs2731674	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5q35.3	F12	rs2731674-G	0.753	3E-14	(Tumor necrosis factor receptor superfamily member 16, NGFR.8374.5.3)	0.21	[0.15-0.27] unit decrease	Affymetrix [10572788] (imputed)	N
1934	chr5	176839889	176839890	rs2731674	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5q35.3	F12	rs2731674-G	0.753	2E-15	(Activating signal cointegrator 1 complex subunit 1, ASCC1.10647.18.3)	0.22	[0.16-0.28] unit increase	Affymetrix [10572788] (imputed)	N
1934	chr5	176839889	176839890	rs2731674	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5q35.3	F12	rs2731674-G	0.753	2E-13	(Parathyroid hormone-related protein, PTHLH.2962.50.2)	0.21	[0.15-0.27] unit decrease	Affymetrix [10572788] (imputed)	N
1934	chr5	176839889	176839890	rs2731674	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5q35.3	F12	rs2731674-G	0.753	2E-12	(Transmembrane glycoprotein NMB, GPNMB.8606.39.3)	0.2	[0.14-0.26] unit decrease	Affymetrix [10572788] (imputed)	N
1934	chr5	176839897	176839898	rs2731673	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	vascular endothelial growth factor D levels	21,758 European ancestry individuals	9,173 individuals	5q35.3		rs2731673-T	0.27	5E-17		0.0824	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1934	chr5	176839897	176839898	rs2731673	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5q35.3	F12	rs2731673-C	0.752	9E-34	(Transmembrane protein 87B, TMEM87B.13485.20.3)	0.33	[0.27-0.39] unit decrease	Affymetrix [10572788] (imputed)	N
1934	chr5	176839897	176839898	rs2731673	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5q35.3	F12	rs2731673-C	0.752	6E-18	(Neurexin-1, NRXN1.8971.9.3)	0.24	[0.18-0.3] unit decrease	Affymetrix [10572788] (imputed)	N
1934	chr5	176839897	176839898	rs2731673	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5q35.3	F12	rs2731673-C	0.752	3E-23	(tRNA (guanine-N(7)-)-methyltransferase, METTL1.12514.16.3)	0.28	[0.22-0.34] unit increase	Affymetrix [10572788] (imputed)	N
1934	chr5	176839897	176839898	rs2731673	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5q35.3	F12	rs2731673-C	0.752	1E-15	(Dipeptidase 2, DPEP2.8327.26.3)	0.22	[0.16-0.28] unit decrease	Affymetrix [10572788] (imputed)	N
1934	chr5	176839897	176839898	rs2731673	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5q35.3	F12	rs2731673-C	0.752	1E-11	(Peptidyl-glycine alpha-amidating monooxygenase, PAM.5620.13.3)	0.19	[0.13-0.25] unit decrease	Affymetrix [10572788] (imputed)	N
1934	chr5	176840084	176840084	rs75077631	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5q35.3	F12	rs75077631-GC	0.748	5E-14	(Laminin subunit alpha-4, LAMA4.6577.64.3)	0.21	[0.15-0.27] unit decrease	Affymetrix [10572788] (imputed)	N
1934	chr5	176840084	176840084	rs75077631	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5q35.3	F12	rs75077631-GC	0.748	4E-13	(Drebrin-like protein, DBNL.4978.54.2)	0.2	[0.14-0.26] unit increase	Affymetrix [10572788] (imputed)	N
1934	chr5	176840084	176840084	rs75077631	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	RANTES levels	3,421 Finnish ancestry individuals	NA	5q35.3	NR	rs75077631-GC		4E-6		0.1278	[0.074-0.182] SD units increase	NR [10700000] (imputed)	N
1934	chr5	176840084	176840084	rs75077631	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	CTACK levels	3,631 Finnish ancestry individuals	NA	5q35.3	NR	rs75077631-GC	NR	3E-7		0.1378	[0.085-0.191] SD units increase	NR [10700000] (imputed)	N
1934	chr5	176841338	176841339	rs2545801	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein OXT	5,368 Icelandic ancestry individuals	NA	5q35.3		rs2545801-T	0.2541	2E-17		0.185823	[0.14-0.23] unit decrease	Illumina [7506463] (imputed)	N
1934	chr5	176841338	176841339	rs2545801	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NPW	5,367 Icelandic ancestry individuals	NA	5q35.3		rs2545801-T	0.2541	2E-13		0.151462	[0.11-0.19] unit increase	Illumina [7506463] (imputed)	N
1934	chr5	176841338	176841339	rs2545801	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein KNG1	5,362 Icelandic ancestry individuals	NA	5q35.3		rs2545801-T	0.2541	2E-13		0.1592	[0.12-0.2] unit increase	Illumina [7506463] (imputed)	N
1934	chr5	176841338	176841339	rs2545801	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CCK	5,366 Icelandic ancestry individuals	NA	5q35.3		rs2545801-T	0.2541	2E-15		0.173118	[0.13-0.22] unit increase	Illumina [7506463] (imputed)	N
1934	chr5	176841338	176841339	rs2545801	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	5q35.3	NR	rs2545801-C	NR	2E-9		0.0171	[0.011-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
1934	chr5	176841338	176841339	rs2545801	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	5q35.3	NR	rs2545801-C	NR	2E-12		0.0192	[0.014-0.024] unit increase	Affymetrix [9000000] (imputed)	N
1934	chr5	176841338	176841339	rs2545801	30837465	Wittemans LBL	2019-03-05	Nat Commun	Assessing the causal association of glycine with risk of cardio-metabolic diseases.	Glycine levels	80,003 European ancestry individuals	NA	5q35.3	F12, GRK6	rs2545801-C	0.747	7E-14		0.042	[0.028-0.056] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1934	chr5	176841338	176841339	rs2545801	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5q35.3	F12	rs2545801-C	0.75	6E-19	(CD63 antigen, CD63.9190.7.3)	0.25	[0.19-0.31] unit increase	Affymetrix [10572788] (imputed)	N
1934	chr5	176841338	176841339	rs2545801	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	5q35.3	F12, GRK6	rs2545801-T	0.2532598	5E-36	(EA, Superoxide dismutase [Mn], mitochondrial)	0.6064	[0.52-0.7] unit decrease	Affymetrix [509946]	N
1934	chr5	176841338	176841339	rs2545801	27656708	Zhang W	2016-09-22	Thromb Haemost	Genome-wide association reveals that common genetic variation in the kallikrein-kinin system is associated with serum L-arginine levels.	L-arginine levels	901 European ancestry individuals, 1,394 Indian Asian ancestry individuals	1,000 European ancestry individuals, 2,981 individuals	5q35.3	F12	rs2545801-T	0.16	1E-12	(random effects model)	2.2	[0.83-3.57] ?mol/l decrease (replication)	Illumina [~ 8000000] (imputed)	N
1934	chr5	176841338	176841339	rs2545801	22703881	Tang W	2012-06-14	Am J Hum Genet	Genetic associations for activated partial thromboplastin time and prothrombin time, their gene expression profiles, and risk of coronary artery disease.	Activated partial thromboplastin time	9,240 European ancestry individuals	2611 European ancestry individuals	5q35.3	RGS14, PRR7, DBN1, GRK6, UIMC1, SLC34A1, F12, FGFR4, NSD1, PRELID1, MXD3, LMAN2	rs2545801-C	NR	6E-88		1.68	[1.48-1.88] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1934	chr5	176841338	176841339	rs2545801	22286219	Kettunen J	2012-01-29	Nat Genet	Genome-wide association study identifies multiple loci influencing human serum metabolite levels.	Metabolite levels	8,330 European ancestry individuals	NA	5q35.3	F12	rs2545801-?	NR	9E-11	(Phe)	0.12	[0.081-0.159] unit decrease	Illumina [~ 7700000] (imputed)	N
1934	chr5	176842473	176842474	rs2731672	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HTN3	5,363 Icelandic ancestry individuals	NA	5q35.3		rs2731672-T	0.2493	7E-14		0.160275	[0.12-0.2] unit increase	Illumina [7506463] (imputed)	N
1934	chr5	176842473	176842474	rs2731672	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HBEGF	5,362 Icelandic ancestry individuals	NA	5q35.3		rs2731672-T	0.2493	3E-17		0.181161	[0.14-0.22] unit decrease	Illumina [7506463] (imputed)	N
1934	chr5	176842473	176842474	rs2731672	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DBNL	5,366 Icelandic ancestry individuals	NA	5q35.3		rs2731672-T	0.2493	4E-19		0.195339	[0.15-0.24] unit decrease	Illumina [7506463] (imputed)	N
1934	chr5	176842473	176842474	rs2731672	33961016	Moksnes MR	2021-05-07	Hum Mol Genet	Genome-wide association study of cardiac troponin I in the general population.	High-sensitivity cardiac troponin I concentration	48,115 European ancestry individuals	NA	5q35.3		rs2731672-C	0.7389	9E-14		0.05	[0.03-0.07] unit increase	Illumina [26711992] (imputed)	N
1934	chr5	176842473	176842474	rs2731672	28011710	Benyamin B	2016-12-22	Hum Mol Genet	Identification of novel loci affecting circulating chromogranins and related peptides.	Circulating chromogranin peptide levels	up to 540 European American and Mexican American individuals, up to 1,267 individuals	NA	5q35.3	F12	rs2731672-?	NR	2E-19	(CHGA361-372)	0.389	[0.30-0.47] unit increase	Illumina [at least 2587527] (imputed)	N
1934	chr5	176842473	176842474	rs2731672	27005778	Kettunen J	2016-03-23	Nat Commun	Genome-wide study for circulating metabolites identifies 62 loci and reveals novel systemic effects of LPA.	Metabolite levels (small molecules and protein measures)	2,118 Erasmus Rucphen (founder/genetic isolate), 22,807 European ancestry individuals	NA	5q35.3	F12, LMAN2	rs2731672-C	0.74	4E-16	(Phenylalanine)	0.09	[0.07-0.11] unit increase	Affymetrix, Illumina, Perlegen [12133295] (imputed)	N
1934	chr5	176842473	176842474	rs2731672	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite ratios	Up to 5,591 European ancestry individuals	Up to 1,767 European ancestry individuals	5q35.3	F12	rs2731672-T	0.26	6E-26	(X-12038/bradykinin, des-arg(9))	0.179	[0.15-0.21] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
1934	chr5	176842473	176842474	rs2731672	23381795	Verweij N	2013-02-04	Hypertension	Genome-wide association study on plasma levels of midregional-proadrenomedullin and C-terminal-pro-endothelin-1.	Circulating vasoactive peptide levels	3,444 European ancestry individuals	3,230 European ancestry individuals	5q35.3	F12	rs2731672-T	0.24	6E-24	(ADM)	0.022	[0.018-0.026] nmol/l increase	Illumina [2269099] (imputed)	N
1934	chr5	176842473	176842474	rs2731672	23381795	Verweij N	2013-02-04	Hypertension	Genome-wide association study on plasma levels of midregional-proadrenomedullin and C-terminal-pro-endothelin-1.	Circulating vasoactive peptide levels	3,444 European ancestry individuals	3,230 European ancestry individuals	5q35.3	F12	rs2731672-T	0.24	1E-67	(ET)	4.61	[4.09-5.13] pmol/l increase	Illumina [2269099] (imputed)	N
1934	chr5	176842473	176842474	rs2731672	22916037	Inouye M	2012-08-16	PLoS Genet	Novel Loci for metabolic networks and multi-tissue expression studies reveal genes for atherosclerosis.	Metabolite levels	6,608 European ancestry individuals	NA	5q35.3	PFN3, GRK6, F12	rs2731672-?	0.27	3E-14				Illumina [~ 2000000] (imputed)	N
1934	chr5	176842473	176842474	rs2731672	21546496	Guerrero JA	2011-05-03	Haematologica	Novel loci involved in platelet function and platelet count identified by a genome-wide study performed in children.	Platelet function and related traits	70 children	286 children	5q35.3	F12	rs2731672-?	NR	1E-6	(FXII levels)			Illumina [320610]	N
1934	chr5	176842473	176842474	rs2731672	20303064	Houlihan LM	2010-03-18	Am J Hum Genet	Common variants of large effect in F12, KNG1, and HRG are associated with activated partial thromboplastin time.	Activated partial thromboplastin time	1,431 European ancestry individuals	NA	5q35.3	F12	rs2731672-A	0.27	2E-30		0.45	[0.37-0.53] unit decrease	Illumina [542050]	N
1934	chr5	176848018	176848019	rs2731670	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	5q35.3		rs2731670-A	0.4401	6E-17	(conditional-joint)	0.0119	[0.0092-0.0146] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1934	chr5	176855626	176855627	rs2545798	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	5q35.3		rs2545798-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1934	chr5	176856924	176856925	rs13177732	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	5q35.3	NR	rs13177732-G	NR	7E-15		0.0222	[0.017-0.028] unit increase	Affymetrix [9000000] (imputed)	N
1934	chr5	176859847	176859848	rs2731664	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	5q35.3	NR	rs2731664-?	NR	8E-7		4.946	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1934	chr5	176859847	176859848	rs2731664	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	5q35.3	GRK6	rs2731664-A	NR	3E-11		0.019917917	[0.014-0.026] unit decrease	Affymetrix [NR]	N
1934	chr5	176860947	176860948	rs35270792	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	5q35.3	GRK6	rs35270792-A	0.00320699999999996	1E-9		0.119583584	[0.081-0.158] unit increase	Affymetrix [93095623] (imputed)	N
1934	chr5	176864201	176864202	rs2545797	29520040	Coleman JRI	2018-03-08	Mol Psychiatry	Biological annotation of genetic loci associated with intelligence in a meta-analysis of 87,740 individuals.	Extremely high intelligence	1,247 European ancestry cases, 86,493 European ancestry controls	NA	5q35.3	DBN1, GRK6, PRR7	rs2545797-T	0.455	3E-8		5.53	NR z score increase increase	Illumina [up to 12595966] (imputed)	N
1934	chr5	176867206	176867207	rs335433	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	5q35.3		rs335433-T	0.4568	2E-9		0.013	[0.0091-0.0169] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
1934	chr5	176872493	176872494	rs2731662	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	5q35.3		rs2731662-A	0.47	8E-13		7.15	z score increase	Affymetrix [9061022] (imputed)	N
1934	chr5	176876824	176876825	rs2630765	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	5q35.3	Intergenic	rs2630765-T	0.4424	6E-18	(MTAG)	0.0144	[0.011-0.018] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1934	chr5	176877623	176877624	rs465670	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	5q35.3	PRR7	rs465670-T	0.5404	3E-10		1.0243927		Affymetrix [11880941] (imputed)	N
1934	chr5	176887105	176887106	rs2545795	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	5q35.3		rs2545795-A	0.4437	1E-18		0.0125	[0.0098-0.0152] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1934	chr5	176887105	176887106	rs2545795	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	5q35.3	Intergenic	rs2545795-A	0.4437	1E-22	(MTAG)	0.013	[0.01-0.016] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1934	chr5	176897493	176897494	rs56152258	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	5q35.3	NR	rs56152258-A	NR	5E-10		0.0336	[0.023-0.044] unit decrease	Affymetrix [9000000] (imputed)	N
1934	chr5	176897493	176897494	rs56152258	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	5q35.3	NR	rs56152258-A	NR	4E-11		0.0358	[0.025-0.046] unit increase	Affymetrix [9000000] (imputed)	N
1934	chr5	176899545	176899546	rs2450333	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	5q35.3	NR	rs2450333-A	NR	2E-11		6.727	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1934	chr5	176907509	176907510	rs2630761	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	5q35.3	Intergenic	rs2630761-A	0.5169	9E-11	(MTAG)	0.0116	[0.0081-0.0151] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1934	chr5	176907509	176907510	rs2630761	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	5q35.3	Intergenic	rs2630761-T	0.483	5E-8		0.0124	[0.0079-0.0169] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1934	chr5	176908730	176908731	rs335426	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	5q35.3	NR	rs335426-A	0.499006	1E-11		0.04276758	[0.03-0.055] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1934	chr5	176908730	176908731	rs335426	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Verbal-numerical reasoning	171,304 British ancestry individuals	NA	5q35.3		rs335426-?	NR	5E-8				NR [7857346] (imputed)	N
1934	chr5	176908730	176908731	rs335426	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	5q35.3	Intergenic	rs335426-A	0.4579	4E-18	(MTAG)	0.0201	[0.016-0.025] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1934	chr5	176908730	176908731	rs335426	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	5q35.3	Intergenic	rs335426-A	0.4579	7E-12		0.0197	[0.014-0.025] unit increase	Affymetrix, Illumina [10100000] (imputed)	N
1934	chr5	176921676	176921677	rs145565113	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5q35.3		rs145565113-?	NR	9E-10				NR [~ 8900000] (imputed)	N
1934	chr5	176930650	176930651	rs337366	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	5q35.3	DDX41, DOK3, PDLIM7	rs337366-A	0.514	1E-6		0.035	[0.021-0.049] unit increase	Affymetrix [7947838] (imputed)	N
1934	chr5	176932986	176932987	rs533549383	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein B4GALT7	5,353 Icelandic ancestry individuals	NA	5q35.3		rs533549383-C	0.01211	6E-69		1.48641	[1.32-1.65] unit decrease	Illumina [7506463] (imputed)	N
1935	chr5	176956598	176956599	rs28473373	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	L1-L4 bone mineral density x serum urate levels interaction	2,207 men, 2,354 women	NA		FAM193B	rs28473373-?	NR	2E-6	(male)	1.15876	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1935	chr5	176975139	176975140	rs335424	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	5q35.3		rs335424-?	NR	4E-11				NR [~ 8900000] (imputed)	N
1935	chr5	176975139	176975140	rs335424	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	5q35.3		rs335424-?	NR	3E-10		0.0135462	[0.0094-0.0177] unit increase	Affymetrix [20259828] (imputed)	N
1935	chr5	176980903	176980904	rs62398471	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	5q35.3	FAM193B	rs62398471-A	0.2946	1E-17		0.0178	[0.014-0.022] unit increase	Affymetrix [18391927] (imputed)	N
1935	chr5	176980903	176980904	rs62398471	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	5q35.3		rs62398471-?	NR	5E-10				NR [~ 8900000] (imputed)	N
1935	chr5	176983462	176983463	rs61142792	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	5q35.3	Intergenic	rs61142792-T	NR	4E-7	(between families)	5.083	unit increase	Affymetrix [up to 15107142] (imputed)	N
1935	chr5	177019261	177019262	rs57960711	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	5q35.3	TMED9	rs57960711-G	0.033	8E-6	(Height change )	0.03	[NR] cm/y increase	Illumina [899892]	N
1935	chr5	177030176	177030177	rs28587776	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	5q35.3		rs28587776-T	0.3541	3E-9		0.0088	[0.0059-0.0117] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1935	chr5	177030176	177030177	rs28587776	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	5q35.3	Intergenic	rs28587776-T	0.3541	2E-11	(MTAG)	0.0092	[0.0065-0.0119] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1935	chr5	177031947	177031948	rs55763804	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	5q35.3	NR	rs55763804-A	NR	6E-10		0.0169	[0.012-0.022] unit increase	Affymetrix [9000000] (imputed)	N
1935	chr5	177033793	177033794	rs11249570	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD62L- monocyte Absolute Count	3,019 Sardinian (founder/genetic isolate) ancestry individuals	NA	5q35.3		rs11249570-A	0.45774	8E-9		0.1525	[0.1-0.2] unit decrease	Illumina [18121986] (imputed)	N
1935	chr5	177036230	177036231	rs729460	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	5q35.3	B4GALT7	rs729460-T	0.6125	5E-8	(B4GALT7, 7806_33_3)	0.13920882	[0.089-0.189] unit increase	Illumina [> 1000000] (imputed)	N
1935	chr5	177043006	177043007	rs12515554	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	5q35.3	Intergenic	rs12515554-T	0.6594	1E-9	(MTAG)	0.0106	[0.0073-0.0139] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1935	chr5	177060311	177060312	rs7731783	28115739	Smith AH	2017-01-24	Mol Psychiatry	Genome-wide association study of therapeutic opioid dosing identifies a novel locus upstream of OPRM1.	Methadone dose in opioid dependence	1,027 European American cases, 383 African American cases	NA	5q35.3	B4GALT7	rs7731783-C	0.4613328981723238	4E-6	(AA)	0.3409	[0.2-0.49] unit decrease	Illumina [at least 988306] (imputed)	N
1935	chr5	177070558	177070559	rs2650265	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Non-word reading	3,409 European ancestry individuals	NA	5q35.3	RP11-1277A3.2	rs2650265-G	0.636494286	9E-6		0.142691	[0.08-0.206] unit decrease	Illumina [6969139] (imputed)	N
1936	chr5	177120696	177120697	rs10060053	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5q35.3		rs10060053-?	NR	3E-23				NR [~ 8900000] (imputed)	N
1937	chr5	177233110	177233111	rs62397673	30898391	Lawrenson K	2019-03-19	Gynecol Oncol	Genome-wide association studies identify susceptibility loci for epithelial ovarian cancer in east Asian women.	Epithelial ovarian cancer	3,238 East Asian ancestry cases, 4,083 East Asian ancestry controls	NA	5q35.3		rs62397673-?	NR	3E-6	(endometrioid)	1.97		Illumina [11595112] (imputed)	N
1938	chr5	177398861	177398861	rs34763399	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Unilateral cleft lip and palate	205 Asian ancestry cases, 315 European ancestry cases, 692 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	5q35.3	NR	rs34763399-?	NR	1E-6		1.39	[1.3-1.49]	Illumina [539000] (imputed)	N
1939	chr5	177494158	177494159	rs7443165	30621171	Coltell O	2019-01-04	Nutrients	Genome-Wide Association Study (GWAS) on Bilirubin Concentrations in Subjects with Metabolic Syndrome: Sex-Specific GWAS Analysis and Gene-Diet Interactions in a Mediterranean Population.	Serum bilirubin levels x Mediterranean diet adherence interaction in metabolic syndrome	257 European ancestry individuals with low adherence to Mediterranean diet, 161 European ancestry individuals with high adherence to Mediterranean diet	NA	5q35.3	intergenic	rs7443165-A	0.277	9E-6				Illumina [622468]	N
1939	chr5	177535369	177535370	rs6601211	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5q35.3		rs6601211-?	NR	3E-11				NR [~ 8900000] (imputed)	N
1940	chr5	177606207	177606208	rs202126283	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	5q35.3		rs202126283-A	0.111947	7E-40		0.047723975	[0.041-0.055] unit decrease	Affymetrix [93095623] (imputed)	N
1940	chr5	177606207	177606208	rs202126283	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	5q35.3		rs202126283-A	0.111949	1E-12		0.025713364	[0.019-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
1940	chr5	177606418	177606419	rs6897795	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	5q35.3		rs6897795-A	0.111756	5E-21		0.03363138	[0.027-0.041] unit decrease	Affymetrix [93095623] (imputed)	N
1940	chr5	177606418	177606419	rs6897795	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q35.3	NR	rs6897795-G	0.88129	7E-29				Affymetrix, Illumina [17210439] (imputed)	N
1940	chr5	177606418	177606419	rs6897795	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	5q35.3	NR	rs6897795-G	0.887273	2E-31		0.035579	[0.03-0.042] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1940	chr5	177606418	177606419	rs6897795	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	5q35.3	intergenic	rs6897795-A	0.1137	2E-16		0.04825894	[0.037-0.06] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1940	chr5	177606418	177606419	rs6897795	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5q35.3	NOLA2	rs6897795-?	NR	1E-6	(inosine)	0.27239373	[0.16-0.38] unit increase	Affymetrix [at least 2500000] (imputed)	N
1940	chr5	177608541	177608542	rs72648830	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q35.3	NR	rs72648830-T	0.205078	2E-25				Affymetrix, Illumina [24588908] (imputed)	N
1940	chr5	177608541	177608542	rs72648830	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	5q35.3	NR	rs72648830-T	0.114465	2E-19		0.026233	[0.021-0.032] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1940	chr5	177610210	177610211	rs11957129	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Platelet count	108,208 Japanese ancestry individuals	NA	5q35.3	NHP2, GMCL1P1	rs11957129-?	NR	1E-8		0.02492	[0.016-0.033] unit decrease novel	Illumina [6108953] (imputed)	N
1940	chr5	177613543	177613544	rs2961663	21156761	Padyukov L	2010-12-14	Ann Rheum Dis	A genome-wide association study suggests contrasting associations in ACPA-positive versus ACPA-negative rheumatoid arthritis.	Rheumatoid arthritis	1,147 European ancestry ACPA positive RA cases, 774 European ancestry ACPA negative RA cases, 1,079 European ancestry controls	887 European ancestry ACPA positive RA cases, 1,218 European ancestry controls	5q35.3	GMCL1L	rs2961663-?	NR	4E-6	(ACPA-positive RA vs ACPA-negative RA)			Illumina [1723056] (imputed)	N
1940	chr5	177614400	177614401	rs11960863	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	5q35.3		rs11960863-G	0.533386	7E-11		0.0216513	[0.015-0.028] unit decrease	Illumina [13478928] (imputed)	N
1940	chr5	177615284	177615285	rs13179114	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	5q35.3		rs13179114-C	NR	3E-17		0.019	[0.015-0.023] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1940	chr5	177629692	177629692	rs144748388	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	5q35.3		rs144748388-CA	NR	4E-8		0.018	[0.012-0.024] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
1940	chr5	177635180	177635181	rs12514956	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	5q35.3		rs12514956-T	NR	7E-15		0.0254	[0.019-0.032] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
1940	chr5	177635180	177635181	rs12514956	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	5q35.3		rs12514956-T	0.16446	5E-9		0.0284297	[0.019-0.038] unit increase	Illumina [13476266] (imputed)	N
1940	chr5	177635180	177635181	rs12514956	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	5q35.3		rs12514956-G	0.919	1E-8		0.12	[-0.16--0.08] % decrease	Affymetrix [NR] (imputed)	N
1940	chr5	177635180	177635181	rs12514956	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	5q35.3	HNRNPAB	rs12514956-T	0.080789	3E-21		0.039344925	[0.031-0.047] unit increase	Affymetrix [93095623] (imputed)	N
1940	chr5	177635180	177635181	rs12514956	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	5q35.3	HNRNPAB	rs12514956-T	0.080786	3E-18		0.03625895	[0.028-0.044] unit increase	Affymetrix [93095623] (imputed)	N
1940	chr5	177635180	177635181	rs12514956	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	5q35.3	HNRNPAB	rs12514956-T	0.08078	7E-19		0.036963265	[0.029-0.045] unit decrease	Affymetrix [93095623] (imputed)	N
1940	chr5	177635180	177635181	rs12514956	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q35.3	NR	rs12514956-T	0.0945887	2E-16				Affymetrix, Illumina [24246363] (imputed)	N
1940	chr5	177635180	177635181	rs12514956	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	5q35.3		rs12514956-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1940	chr5	177640863	177640864	rs12522289	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	5q35.3	NR	rs12522289-G	0.080979	3E-13		0.024688	[0.018-0.031] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
1940	chr5	177647726	177647726	rs757122565	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q35.3	NR	rs757122565-A	0.02439	3E-8	(ISOC2)	0.1784	NR unit increase	Illumina [1671387] (imputed)	N
1940	chr5	177663551	177663552	rs6899215	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Diastolic blood pressure (long-term average)	5,304 African American individuals, 13,137 European ancestry individuals, 1,317 Hispanic individuals, 1,439 admixed individuals, 703 Chinese ancestry individuals	6,500 African American individuals, 2,451 European ancestry individuals, 2,869 Hispanic individuals	5q35.3	NR	rs6899215-T	0.3304	3E-7		0.3656	[0.23-0.51] mmHg decrease	Affymetrix, Illumina [NR] (imputed)	N
1940	chr5	177683904	177683905	rs61739424	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	5q35.3	NR	rs61739424-G	NR	1E-9		1.105	[1.07-1.14]	Affymetrix, Illumina [29235255] (imputed)	N
1940	chr5	177683904	177683905	rs61739424	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	5q35.3	NR	rs61739424-A	0.0457271	2E-8		0.0415401	[0.027-0.056] unit decrease	NR [19129689] (imputed)	N
1940	chr5	177696288	177696292	rs375433031	34586716	Chen J	2021-09-29	Mol Genet Genomic Med	Heritability and genome-wide association study of blood pressure in Chinese adult twins.	Pulse pressure	137 Chinese ancestry twins	NA	5q35.3		rs375433031-?	NR	8E-6				Illumina [7401356] (imputed)	N
1941	chr5	177746344	177746345	rs73344869	35115690	Lopera-Maya EA	2022-02-03	Nat Genet	Effect of host genetics on the gut microbiome in 7,738 participants of the Dutch Microbiome Project.	Gut microbiota abundance (k_Bacteria.p_Bacteroidetes.c_Bacteroidia.o_Bacteroidales.f_Rikenellaceae.g_Alistipes)	7,738 European ancestry individuals	NA	5q35.3		rs73344869-C	0.9254282872569323	2E-8		0.17234856	[0.11-0.23] unit increase	Illumina [5584686] (imputed)	N
1941	chr5	177746344	177746345	rs73344869	35115690	Lopera-Maya EA	2022-02-03	Nat Genet	Effect of host genetics on the gut microbiome in 7,738 participants of the Dutch Microbiome Project.	Gut microbiota abundance (k_Bacteria.p_Bacteroidetes.c_Bacteroidia.o_Bacteroidales.f_Rikenellaceae)	7,738 European ancestry individuals	NA	5q35.3		rs73344869-C	0.9254282872569323	2E-8		0.1724228	[0.11-0.23] unit increase	Illumina [5584686] (imputed)	N
1941	chr5	177746599	177746600	rs10066744	27028160	Sherva R	2016-03-30	JAMA Psychiatry	Genome-wide Association Study of Cannabis Dependence Severity, Novel Risk Variants, and Shared Genetic Risks.	Cannabis dependence symptom count	Up to 6,000 African American ancestry individuals, 8,754 European ancestry individuals	At least 1,893 European ancestry individuals	5q35.3	COL23A1	rs10066744-G	0.96	2E-7	(AA)			Illumina [NR] (imputed)	N
1941	chr5	177753472	177753473	rs2973692	33824429	Fjukstad KK	2021-04-06	Pharmacogenomics J	Genetic variants associated with cardiometabolic abnormalities during treatment with selective serotonin reuptake inhibitors: a genome-wide association study.	HDL levels x SSRI levels (escitalopram or citalopram) interaction in schizophrenia or bipolar disorder	181 European ancestry individuals	NA	5q35.3	COL23A1	rs2973692-C	NR	2E-7		2.77E-10	[-8.28643-8.28643] unit increase	Illumina [NR] (imputed)	N
1941	chr5	177755174	177755175	rs930055	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	5q35.3	NR	rs930055-?	NR	3E-8				Illumina [7760689] (imputed)	N
1941	chr5	177774189	177774190	rs72820961	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	5q35.3	HNRNPAB	rs72820961-G	0.99296875	1E-9	(HNRNPAB, 8894_80_3)	0.8905262	[0.61-1.18] unit increase	Illumina [> 1000000] (imputed)	N
1941	chr5	177782536	177782537	rs35739984	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	5q35.3		rs35739984-?	NR	5E-10				Affymetrix [NR] (imputed)	N
1941	chr5	177786298	177786299	rs112303186	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	5q35.3		rs112303186-?	NR	3E-9				Affymetrix [NR] (imputed)	N
1941	chr5	177808674	177808675	rs2910124	23568457	Wade TD	2013-04-09	Int J Eat Disord	Genetic variants associated with disordered eating.	Bulimia nervosa	151 European ancestry female cases, 2,291 European ancestry female controls	NA	5q35.3	COL23A1	rs2910124-C	0.858	6E-6		0.059	[0.034-0.084] unit decrease	Illumina [6150213] (imputed)	N
1941	chr5	177809105	177809106	rs2973732	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	5q35.3	NR	rs2973732-?	NR	4E-8	(left inferior lateral ventricle)			NR [9227495] (imputed)	N
1941	chr5	177830934	177830935	rs17052419	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	5q35.3	NR	rs17052419-?	NR	7E-34				Affymetrix [NR]	N
1941	chr5	177840381	177840382	rs10070303	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	5q35.3	COL23A1	rs10070303-A	0.249	6E-6	(Fat mass change )	0.03	[NR] kg/y increase	Illumina [899892]	N
1941	chr5	177862844	177862845	rs6601236	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip	15 Asian ancestry cases, 13 European ancestry cases, 15 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	5q35.3	NR	rs6601236-?	NR	5E-6		3.64	[2.91-4.56]	Illumina [539000] (imputed)	N
1942	chr5	177891550	177891551	rs2672843	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	5q35.3	NR	rs2672843-G	NR	3E-11		1.048	[1.03-1.06]	Affymetrix, Illumina [29235255] (imputed)	N
1942	chr5	177922197	177922198	rs118078182	30174134	Qiao L	2018-08-16	J Genet Genomics	Genome-wide variants of Eurasian facial shape differentiation and a prospective model of DNA based face prediction.	Nose length	424 Uyghur ancestry female individuals, 270 Uyghur ancestry male individuals	108 Uyghur ancestry female individuals, 63 Uyghur ancestry male individuals, 1,080 Han Chinese ancestry female individuals, 424 Han Chinese ancestry male individuals	5q35.3	COL23A1	rs118078182-?	NR	3E-10	(Uyghur)	2.07	[NR] unit decrease	Illumina [8100752] (imputed)	N
1942	chr5	177929420	177929421	rs150117434	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	5q35.3	NR	rs150117434-T	NR	6E-6	(GEE model)	1.1035	[0.62-1.58] unit decrease	NR [NR] (imputed)	N
1942	chr5	177933944	177933945	rs629241	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	5q35.3	NR	rs629241-C	0.371354	2E-10		0.0202076	[0.014-0.026] unit increase	NR [19129689] (imputed)	N
1942	chr5	177949428	177949429	rs2546644	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	5q35.3	COL23A1	rs2546644-C	0.82828125	4E-7	(COL23A1, 4543_65_2)	0.16996075	[0.1-0.24] unit decrease	Illumina [> 1000000] (imputed)	N
1942	chr5	177953358	177953359	rs549345555	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	7,894 Sub-Saharan African ancestry individuals	NA	5q35.3		rs549345555-G	0.98401	8E-6		0.0331997	[0.018-0.048] unit increase	Illumina [13900000] (imputed)	N
1942	chr5	177963856	177963857	rs10063570	27098658	Muller-Calleja N	2016-04-21	Thromb Haemost	Antiphospholipid antibodies in a large population-based cohort: genome-wide associations and effects on monocyte gene expression.	Presence of antiphospholipid antibodies	4,163 German ancestry individuals	NA	5q35.3	COL23A1	rs10063570-?	NR	3E-6	(Anti-cardiolipin IgG and Anti-?2GPI IgG)			Affymetrix [at least 662405]	N
1942	chr5	177968914	177968915	rs4976790	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	5q35.3	COL23A1	rs4976790-T	0.11	7E-9		1.08	[1.05-1.10]	Illumina [20370935] (imputed)	N
1943	chr5	178004655	178004656	rs150359965	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Ischemic stroke (cardioembolic)	174 Indian ancestry cases, 2,154 Indian ancestry controls	NA	5q35.3		rs150359965-?	NR	6E-6		1.1547443	[1.08515181301153-1.22879978618473]	Illumina [up to 7827597] (imputed)	N
1943	chr5	178017333	178017334	rs262031	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Bacterial meningitis	842 European ancestry cases, 82,778 European ancestry controls	NA	5q35.3	NR	rs262031-?	NR	9E-6		2.753	[1.86-3.65] unit decrease	Illumina [at least 560000] (imputed)	N
1943	chr5	178086923	178086924	rs7711186	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in obese individuals	4,613 European ancestry male individuals, 4,690 European ancestry female individuals, 142 European ancestry individuals	NA	5q35.3	CLK4	rs7711186-C	0.08	4E-7	(men)	0.215	[0.13-0.3] kg/m2 increase	Affymetrix, Illumina [at least 188473] (imputed)	N
1943	chr5	178099850	178099851	rs72810671	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	5q35.3	NR	rs72810671-?	NR	2E-6		1326.297	NR unit decrease	Illumina [2379855]	N
1943	chr5	178121598	178121599	rs6866344	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	5q35.3	intergenic	rs6866344-G	0.2715	6E-10		0.02471816	[0.017-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
1943	chr5	178121754	178121755	rs2169762	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	5q35.3	intergenic	rs2169762-T	0.269	6E-9		0.02329634	[0.015-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
1944	chr5	178158339	178158339	rs1470969498	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q35.3	NR	rs1470969498-A	0.0122	2E-8	(VAPB)	0.06273	NR unit increase	Illumina [1671387] (imputed)	N
1944	chr5	178161176	178161177	rs56027323	32747698	Matoba N	2020-08-03	Transl Psychiatry	Common genetic risk variants identified in the SPARK cohort support DDHD2 as a candidate risk gene for autism.	Autism spectrum disorder	4,535 European ancestry cases, 37 African ancestry cases, 83 East Asian ancestry cases, 1,567 cases, 4,535 European ancestry controls, 37 African ancestry controls, 83 East Asian ancestry controls, 1,567 controls	NA	5q35.3	NR	rs56027323-A	0.093149	9E-6		1.22	[1.12-1.33]	Illumina [8992756] (imputed)	N
1944	chr5	178208843	178208844	rs12518860	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	L1-L4 bone mineral density x serum urate levels interaction	2,207 men, 2,354 women	NA		AACSP1	rs12518860-?	NR	7E-6	(female)	0.165595	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1944	chr5	178208843	178208844	rs12518860	32572135	Zhao Y	2020-06-22	Sci Rep	Four Loci Are Associated with Cardiorespiratory Fitness and Endurance Performance in Young Chinese Females.	Cardiorespiratory fitness (800m run time)	762 Han Chinese ancestry individuals	NA		AACSP1	rs12518860-A		1E-7		20.9	[NR] unit increase	Affymetrix, Illumina [5129327] (imputed)	N
1944	chr5	178217755	178217756	rs11955306	30796134	Soderholm M	2019-02-22	Neurology	Genome-wide association meta-analysis of functional outcome after ischemic stroke.	3-month functional outcome in ischaemic stroke (modified Rankin score)	3,830 European and unknown ancestry modified Rankin score 0-2 cases, 2,335 European and unknown ancestry modified Rankin score 3-6 cases	NA	5q35.3	AACSP1, ZNF354A, ZNF354B	rs11955306-C	0.23	2E-6		1.27	[1.17-1.37]	Affymetrix, Illumina [~ 8500000] (imputed)	N
1944	chr5	178221573	178221574	rs751593017	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	5q35.3	AACSP1	rs751593017-A	0.002	3E-7		1.725	[1.06-2.39] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1945	chr5	178274143	178274144	rs7708351	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	California verbal learning test score	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	5q35.3	ZNF354B	rs7708351-A	NR	3E-6		1.775843	[1.04-2.51] unit increase	Illumina [> 6200000] (imputed)	N
1945	chr5	178276530	178276531	rs6891035	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	5q35.3	NR	rs6891035-?	NR	3E-7		5.131	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1945	chr5	178356945	178356946	rs10051284	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 16)	2,187 European ancestry individuals	NA	5q35.3	NR	rs10051284-G	0.36	4E-6		0.1467	[0.084-0.209] unit decrease	Illumina [10677593] (imputed)	N
1945	chr5	178359988	178359989	rs12186577	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	5q35.3	NR	rs12186577-T		3E-9		0.11	[0.071-0.149] unit increase	NR [NR]	N
1945	chr5	178359988	178359989	rs12186577	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	5q35.3	ZNF354B, ZFP2, ZNF454, GRM6	rs12186577-?		9E-17				Affymetrix, Illumina [NR] (imputed)	N
1946	chr5	178395849	178395850	rs11741688	25469926	Gottlieb DJ	2014-12-02	Mol Psychiatry	Novel loci associated with usual sleep duration: the CHARGE Consortium Genome-Wide Association Study.	Sleep duration	47,180 European ancestry individuals	4,771 African American individuals	5q35.3	ZNF454	rs11741688-?	NR	3E-6	(EA)	1.96	[1.14-2.78] unit increase	Affymetrix, Illumina [2033301]	N
1946	chr5	178397266	178397267	rs112653955	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (processing speed) x major depressive disorder interaction (2df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	5q35.3		rs112653955-A	0.01	9E-9				NR [NR] (imputed)	N
1946	chr5	178397266	178397267	rs112653955	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (processing speed) x major depressive disorder interaction (1df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	5q35.3		rs112653955-A	0.01	6E-6		0.21	[-0.0252-0.4452] unit increase	NR [NR] (imputed)	N
1946	chr5	178426318	178426319	rs11249608	23449627	Cousminer DL	2013-02-27	Hum Mol Genet	Genome-wide association and longitudinal analyses reveal genetic loci linking pubertal height growth, pubertal timing and childhood adiposity.	Pubertal anthropometrics	7,161 European ancestry males, 6,879 European ancestry females	5,133 European ancestry males, 4,577 European ancestry females	5q35.3	GRM6	rs11249608-C	0.69	6E-7	(Single Height-female)	0.08	[0.049-0.111] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1946	chr5	178505166	178505167	rs4701031	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	5q35.3	NR	rs4701031-?	NR	1E-16				Affymetrix [~ 8270000] (imputed)	N
1946	chr5	178505166	178505167	rs4701031	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	5q35.3		rs4701031-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1946	chr5	178507755	178507756	rs76088637	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	5q35.3		rs76088637-C	0.35	7E-17		8.35	z score increase	Affymetrix [9061022] (imputed)	N
1946	chr5	178507755	178507756	rs76088637	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	5q35.3	NR	rs76088637-C	0.3469	7E-10				NR [9056863] (imputed)	N
1946	chr5	178507755	178507756	rs76088637	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	5q35.3	ZNF354C	rs76088637-C	NR	1E-13		0.0221599	[0.016-0.028] unit increase	Affymetrix [321114] (imputed)	N
1946	chr5	178507755	178507756	rs76088637	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	5q35.3	ZNF354C	rs76088637-C	NR	2E-8		0.0167945	[0.011-0.023] unit increase	Affymetrix [321169] (imputed)	N
1946	chr5	178514728	178514729	rs931619	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	5q35.3	NR	rs931619-A	0.3572	1E-7		0.0095	[0.006-0.013] unit increase	NR [~ 27400000] (imputed)	N
1947	chr5	178525778	178525779	rs10464079	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	5q35.3		rs10464079-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1947	chr5	178526690	178526691	rs4701043	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or major depressive disorder	11,361 European ancestry schizophrenia female cases, 20,206 European ancestry schizophrenia male cases, 11,897 European ancestry bipolar disorder female cases, 8,027 European ancestry bipolar disorder male cases, 10,865 European ancestry major depressive disorder female cases, 5,105 major depressive disorder male cases, 46,410 European ancestry female controls, 46,615 European ancestry male controls, 686 East Asian ancestry schizophrenia female cases, 1,907 East Asian ancestry female controls, 1,150 East Asian ancestry schizophrenia male cases, 1,476 East Asian ancestry male controls	NA	5q35.3	ZNF354C, ADAMTS2	rs4701043-A	0.6175	2E-6	(male)	0.0569	[0.033-0.081] unit decrease	NR [NR] (imputed)	N
1947	chr5	178526690	178526691	rs4701043	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or major depressive disorder	11,361 European ancestry schizophrenia female cases, 20,206 European ancestry schizophrenia male cases, 11,897 European ancestry bipolar disorder female cases, 8,027 European ancestry bipolar disorder male cases, 10,865 European ancestry major depressive disorder female cases, 5,105 major depressive disorder male cases, 46,410 European ancestry female controls, 46,615 European ancestry male controls	NA	5q35.3	ZNF354C, ADAMTS2	rs4701043-A	NR	5E-7	(male)	0.0616	[0.037-0.086] unit decrease	NR [NR] (imputed)	N
1947	chr5	178535712	178535713	rs11750568	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	5q35.3	ADAMTS2	rs11750568-A	0.332	6E-11		0.02	[0.014-0.026] unit increase	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
1947	chr5	178539381	178539382	rs1863918	27723809	Matsunami K	2016-10-10	PLoS One	Genome-Wide Association Study Identifies ZNF354C Variants Associated with Depression from Interferon-Based Therapy for Chronic Hepatitis C.	Depression in response to interferon-based therapy in chronic hepatitis C	45 Japanese ancestry cases, 179 Japanese ancestry controls	40 Japanese ancestry cases, 120 Japanese ancestry controls	5q35.3	ZNF354C, ADAMTS2	rs1863918-T	NR	8E-8		2.55	[1.8-3.61]	Affymetrix [at least 551176] (imputed)	N
1947	chr5	178547312	178547313	rs888762	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	5q35.3		rs888762-C	0.33	9E-12		6.82	z score increase	Affymetrix [9061022] (imputed)	N
1947	chr5	178547312	178547313	rs888762	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	5q35.3	NR	rs888762-C	0.3315	7E-11				NR [9056863] (imputed)	N
1947	chr5	178547312	178547313	rs888762	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	5q35.3	ADAMTS2, ZNF354C	rs888762-C	0.324287	7E-18	(females)	0.02685	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1947	chr5	178547312	178547313	rs888762	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	5q35.3	ADAMTS2, ZNF354C	rs888762-C	0.324287	1E-17		0.01972	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1947	chr5	178547312	178547313	rs888762	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	5q35.3	ADAMTS2, ZNF354C	rs888762-C	0.324287	3E-14		0.01769	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1947	chr5	178547312	178547313	rs888762	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	5q35.3	ADAMTS2, ZNF354C	rs888762-C	0.324287	2E-14	(females)	0.02348	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1947	chr5	178548513	178548514	rs2303640	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	5q35.3	ADAMTS2	rs2303640-C	NR	1E-9		0.0201306	[0.014-0.027] unit decrease	Affymetrix [321114] (imputed)	N
1947	chr5	178549253	178549254	rs10447301	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	5q35.3	NR	rs10447301-?	NR	7E-10				Affymetrix [~ 8270000] (imputed)	N
1947	chr5	178549253	178549254	rs10447301	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	5q35.3	ADAMTS2	rs10447301-G	0.7364	3E-9		0.088	[0.057-0.119] unit decrease	Affymetrix [~ 11900000] (imputed)	N
1947	chr5	178551298	178551299	rs3822593	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	5q35.3		rs3822593-G	NR	1E-23		0.0151	[0.012-0.018] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1947	chr5	178551298	178551299	rs3822593	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	5q35.3	ADAMTS2	rs3822593-T	NR	8E-14		0.0215792	[0.016-0.027] unit increase	Affymetrix [321114] (imputed)	N
1947	chr5	178551298	178551299	rs3822593	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5q35.3		rs3822593-?	NR	2E-31				NR [~ 8900000] (imputed)	N
1947	chr5	178561706	178561707	rs62396128	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	5q35.3		rs62396128-G	NR	3E-8		0.015	[0.0097-0.0203] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
1947	chr5	178561776	178561777	rs1298651	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	5q35.3	ADAMTS2	rs1298651-G	NR	8E-9		0.0189059	[0.012-0.025] unit increase	Affymetrix [321114] (imputed)	N
1947	chr5	178570913	178570914	rs10039254	18937294	Lasky-Su J	2008-12-05	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association scan of the time to onset of attention deficit hyperactivity disorder.	Attention deficit hyperactivity disorder (time to onset)	930 European ancestry trios	NA	5q35.3	ADAMTS2	rs10039254-A	NR	8E-6	(later onset)			Perlegen [429981]	N
1947	chr5	178581796	178581797	rs2278222	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	5q35.3	ADAMTS2	rs2278222-C	0.763434	6E-11		0.00191542	[0.0014-0.0025] unit increase	Affymetrix [13995440] (imputed)	N
1947	chr5	178585186	178585187	rs34865831	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	5q35.3	NR	rs34865831-T	NR	1E-9		0.0171	[0.012-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
1948	chr5	178661922	178661923	rs114330092	30306274	Shah RL	2018-10-10	Hum Genet	Genome-wide association studies for corneal and refractive astigmatism in UK Biobank demonstrate a shared role for myopia susceptibility loci.	Refractive astigmatism	70,505 European ancestry cases, 17,500 European ancestry controls	NA	5q35.3	ADAMTS2	rs114330092-G	NR	3E-6		1.1547344	[1.08-1.24]	NR [5919636] (imputed)	N
1948	chr5	178663407	178663408	rs469568	22990015	Arning A	2012-09-20	Blood	A genome-wide association study identifies a gene network of ADAMTS genes in the predisposition to pediatric stroke.	Stroke (pediatric)	270 European ancestry trios	NA	5q35.3	ADAMTS2	rs469568-T	0.483	8E-6	(All)	1.77	[NR]	Illumina [334581]	N
1948	chr5	178664462	178664463	rs11741099	31533690	Orlova E	2019-09-18	BMC Oral Health	Pilot GWAS of caries in African-Americans shows genetic heterogeneity.	Dental caries (decayed and filled deciduous teeth)	96 African American children	NA	5q35.3	RUFY1, MAML1, GRM6	rs11741099-?		3E-6		1.96	[1.18-2.74] unit increase	Illumina [~ 4900000] (imputed)	N
1948	chr5	178671146	178671146	rs35028368	29760442	Iglesias AI	2018-05-14	Nat Commun	Cross-ancestry genome-wide association analysis of corneal thickness strengthens link between complex and Mendelian eye diseases.	Central corneal thickness	17,803 European ancestry individuals, 8,107 Asian ancestry individuals	NA	5q35.3	ADAMTS2	rs35028368-?	0.26	4E-8		2.39	[1.55-3.23] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1948	chr5	178687682	178687683	rs340122	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	5q35.3	NR	rs340122-?	NR	6E-6		0.0081266	[0.0046-0.0116] unit decrease	Affymetrix [805426] (imputed)	N
1948	chr5	178695904	178695905	rs35751	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5q35.3		rs35751-?	NR	4E-17				NR [~ 8900000] (imputed)	N
1948	chr5	178699310	178699311	rs901254	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue adjusted for BMI	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	5q35.3	ADAMTS2	rs901254-C	0.96	9E-6	(Men)			Affymetrix, Illumina [2500000] (imputed)	N
1948	chr5	178700898	178700899	rs2013658	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Intraocular pressure and central corneal thickness (multi-trait analysis)	up to 31,269 European ancestry individuals	up to 7,792 Chinese ancestry individuals, 3,280 Malay ancestry individuals, 3,400 Indian ancestry individuals	5q35.3	ADAMTS2	rs2013658-T	0.3356	1E-7	(EA)			Affymetrix, Illumina [up to 12426120] (imputed)	N
1948	chr5	178700898	178700899	rs2013658	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Intraocular pressure	31,269 European ancestry individuals	NA	5q35.3	ADAMTS2	rs2013658-T	0.3356	6E-6		0.1251	NR mmHg decrease	Affymetrix, Illumina [12426120] (imputed)	N
1948	chr5	178705706	178705707	rs13165403	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	5q35.3		rs13165403-?	NR	4E-14				NR [~ 8900000] (imputed)	N
1948	chr5	178708208	178708209	rs407818	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota (alpha diversity)	858 Metropolitan French ancestry individuals	NA	5q35.3	NR	rs407818-?	NR	8E-6	(ACE metric)	0.7652	[0.43-1.1] unit increase	Illumina [5293637] (imputed)	N
1948	chr5	178708208	178708209	rs407818	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota (alpha diversity)	858 Metropolitan French ancestry individuals	NA	5q35.3	NR	rs407818-?	NR	3E-6	(Chao1 richness estimate)	0.486567	[0.28-0.69] unit increase	Illumina [5293637] (imputed)	N
1948	chr5	178719363	178719364	rs4700798	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Intake of total sugars	174,424 European ancestry individuals	NA	5q35.3	ADAMTS2	rs4700798-C	0.39	5E-6		0.78	[0.45-1.11] g/day increase	Affymetrix [10353649] (imputed)	N
1948	chr5	178762063	178762064	rs340417	28300201	Hernandez-Pacheco N	2017-03-16	Sci Rep	Identification of a novel locus associated with skin colour in African-admixed populations.	Skin pigmentation	285 Puerto Rican individuals	373 African American individuals	5q35.3	NR	rs340417-A	NR	4E-6	(Hispanic)	3.86	[5.48-2.24] unit decrease	Affymetrix [14000000] (imputed)	N
1948	chr5	178766911	178766912	rs28549	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	5q35.3	ADAMTS2	rs28549-A	0.4151	1E-8		0.0821	[0.054-0.11] unit increase	Affymetrix [~ 11900000] (imputed)	N
1949	chr5	178795259	178795260	rs173866	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	SAR324 abundance in stool	5,959 Finnish ancestry individuals	NA	5q35.3		rs173866-A	0.0311498	3E-8		0.054152	[0.035-0.073] unit decrease	Illumina [7980478] (imputed)	N
1949	chr5	178795259	178795260	rs173866	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	SAR324 abundance in stool	5,959 Finnish ancestry individuals	NA	5q35.3		rs173866-A	0.0311498	1E-8		0.0450242	[0.03-0.061] unit decrease	Illumina [7980478] (imputed)	N
1950	chr5	178914710	178914711	rs6875834	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	5q35.3	NR	rs6875834-?	NR	4E-8				Illumina [7760689] (imputed)	N
1950	chr5	178920202	178920202	rs146641304	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	1,505 Ashkenazi Jewish founder cases, 2,553 Ashkenazi Jewish founder controls	NA	5q35.3	NR	rs146641304-AC	NR	9E-6		1.5625	[NR]	Illumina [up to 9792010] (imputed)	N
1950	chr5	178936267	178936268	rs80090179	32386560	Ramirez J	2020-04-29	Am J Hum Genet	Common Genetic Variants Modulate the Electrocardiographic Tpeak-to-Tend Interval.	TPE interval (resting)	71,338 European ancestry individuals	NA	5q35.3	RUFY1	rs80090179-T	0.989	1E-9		0.156	[0.11-0.21] unit decrease	Affymetrix [~ 9000000] (imputed)	N
1950	chr5	178948247	178948248	rs7708438	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure	35,269 European ancestry cases, 63,451 European ancestry controls	NA	5q35.3	NR	rs7708438-C	0.420258	8E-6		1.064	[1.04-1.09]	Affymetrix [7791636] (imputed)	N
1950	chr5	178948364	178948364	rs148586546	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 15, philtrum width)	2,187 European ancestry individuals	NA	5q35.3	NR	rs148586546-A	0.08046	5E-6		0.2587	[0.15-0.37] unit increase	Illumina [10677593] (imputed)	N
1950	chr5	178981240	178981241	rs10479542	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	5q35.3	RUFY1	rs10479542-A	0.391926772	4E-6		1.0570045	[1.032493546-1.082097319]	Illumina [10439017] (imputed)	N
1950	chr5	178988607	178988608	rs6899218	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	5q35.3		rs6899218-A	0.51	8E-10				NR [NR] (imputed)	N
1950	chr5	178988607	178988608	rs6899218	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	5q35.3		rs6899218-A	0.51	1E-11		0.01	% increase	NR [NR] (imputed)	N
1950	chr5	178994086	178994087	rs11958537	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	5q35.3		rs11958537-T	0.38	4E-10		6.26	z score increase	Affymetrix [9061022] (imputed)	N
1950	chr5	178994086	178994087	rs11958537	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	5q35.3	NR	rs11958537-T	0.4034	3E-9				NR [9056863] (imputed)	N
1950	chr5	179012352	179012353	rs79267661	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	5q35.3	NR	rs79267661-?	NR	9E-6		0.1523	[0.084-0.221] unit increase	Illumina [at least 560000] (imputed)	N
1950	chr5	179032354	179032355	rs56370020	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	5q35.3	RUFY1	rs56370020-T	0.358953	2E-10		0.014690931	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
1950	chr5	179032487	179032488	rs6894268	22911880	Boraska V	2012-08-22	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association analysis of eating disorder-related symptoms, behaviors, and personality traits.	Eating disorders	Up to 2,567 European ancestry individuals	Up to 767 European ancestry cases, up to 486  European ancestry controls	5q35.3	RUFY1	rs6894268-A	0.354	3E-6	(Body Dissatisfaction)	1.439	[0.84-2.04] unit increase	Illumina [283744]	N
1950	chr5	179042399	179042400	rs61408162	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	5q35.3		rs61408162-T	0.32	3E-21		9.47	z score increase	Affymetrix [9061022] (imputed)	N
1950	chr5	179042399	179042400	rs61408162	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	5q35.3		rs61408162-T	0.32	2E-11		6.72	z score increase	Affymetrix [9061022] (imputed)	N
1950	chr5	179042399	179042400	rs61408162	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	5q35.3	NR	rs61408162-T	0.3617	7E-12				NR [9056863] (imputed)	N
1950	chr5	179042399	179042400	rs61408162	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	5q35.3	HNRNPH1	rs61408162-T	0.35721	1E-12		0.016458547	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1951	chr5	179054922	179054922	rs574977616	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	5q35.3	HNRNPH1	rs574977616-CA	0.352812	3E-11		0.01567313	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1951	chr5	179056110	179056111	rs61078164	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Daytime sleep phenotypes	874 European ancestry individuals	NA	5q35.3	HNRNPH1, C5orf60, RUFY1, CBY3, CANX, HMGB3P22	rs61078164-G	NR	1E-6	(daytime napping, weekdays)	0.7744	[0.46-1.08] unit decrease	Affymetrix [7141204] (imputed)	N
1951	chr5	179056159	179056160	rs113817606	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Daytime sleep phenotypes	874 European ancestry individuals	NA	5q35.3	HNRNPH1, C5orf60, RUFY1, CBY3, CANX, HMGB3P22	rs113817606-C	NR	7E-7	(daytime napping)	1.117	[0.68-1.56] unit decrease	Affymetrix [7141204] (imputed)	N
1951	chr5	179091091	179091092	rs13179916	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Initial pursuit acceleration	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	5q35.3	LOC105377763	rs13179916-A	0.09897	2E-6				Illumina [4404269] (imputed)	N
1951	chr5	179110668	179110669	rs192173275	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MGAT4B	5,350 Icelandic ancestry individuals	NA	5q35.3		rs192173275-T	0.01246	2E-14		0.62426	[0.46-0.78] unit decrease	Illumina [7506463] (imputed)	N
1951	chr5	179122083	179122087	rs5873661	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	5q35.3	CANX	rs5873661-C	0.800267	1E-14		0.021384753	[0.016-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1951	chr5	179122366	179122367	rs13159123	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q35.3	NR	rs13159123-C	0.190794	5E-10				Affymetrix, Illumina [23472807] (imputed)	N
1951	chr5	179126089	179126090	rs1134924	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	5q35.3	CANX	rs1134924-T	0.5056	2E-10		0.02283249	[0.016-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1951	chr5	179126456	179126457	rs13180726	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q35.3	NR	rs13180726-A	0.789384	2E-19				Affymetrix, Illumina [24649327] (imputed)	N
1951	chr5	179126456	179126457	rs13180726	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	5q35.3	NR	rs13180726-A	0.825591	3E-18		0.02131	[0.017-0.026] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1951	chr5	179126631	179126632	rs13182141	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	5q35.3		rs13182141-T	NR	5E-13		0.0153	[0.011-0.019] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
1951	chr5	179126631	179126632	rs13182141	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	5q35.3	CANX	rs13182141-T	0.500043	4E-18		0.019329827	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1951	chr5	179126631	179126632	rs13182141	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q35.3	NR	rs13182141-T	0.499979	7E-18				Affymetrix, Illumina [23114412] (imputed)	N
1951	chr5	179126631	179126632	rs13182141	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	5q35.3		rs13182141-?	NR	3E-17				NR [~ 8900000] (imputed)	N
1951	chr5	179126631	179126632	rs13182141	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	5q35.3	CANX	rs13182141-T	0.4993	6E-10		0.02230376	[0.015-0.029] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1951	chr5	179134664	179134664	rs369386134	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	5q35.3	CANX	rs369386134-TA	0.80439	9E-11		0.018335205	[0.013-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1951	chr5	179135814	179135815	rs6893300	24680774	Mezzavilla M	2014-03-25	Gene	Insight into genetic determinants of resting heart rate.	Resting heart rate	855 Friuli Venezia Giulia (founder/genetic isolate) individuals	NA	5q35.3	CANX	rs6893300-C	0.718343	9E-9				Illumina [2058182] (imputed)	N
1951	chr5	179137435	179137436	rs13174472	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	5q35.3		rs13174472-T	NR	3E-13		0.0142	[0.01-0.018] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1951	chr5	179160401	179160402	rs61751563	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Rheumatic fever	1,115 European ancestry cases, 88,076 European ancestry controls	NA	5q35.3	NR	rs61751563-?	NR	6E-6		0.4886	[0.29-0.69] unit decrease	Illumina [at least 560000] (imputed)	N
1951	chr5	179168096	179168097	rs17617068	24680774	Mezzavilla M	2014-03-25	Gene	Insight into genetic determinants of resting heart rate.	Resting heart rate	855 Friuli Venezia Giulia (founder/genetic isolate) individuals	NA	5q35.3	MAML1	rs17617068-T	0.71853	1E-8				Illumina [2058182] (imputed)	N
1952	chr5	179180717	179180718	rs12234037	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	5q35.3		rs12234037-?	NR	3E-11				Affymetrix [NR] (imputed)	N
1952	chr5	179184487	179184488	rs76025697	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	5q35.3	MAML1	rs76025697-A	0.4194	4E-12		0.02513983	[0.018-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1952	chr5	179184487	179184488	rs76025697	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	5q35.3	MAML1	rs76025697-A	0.4196	5E-12		0.02507504	[0.018-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1952	chr5	179184487	179184488	rs76025697	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	5q35.3	MAML1	rs76025697-A	0.4194	6E-12		0.02498109	[0.018-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1952	chr5	179184487	179184488	rs76025697	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	5q35.3	MAML1	rs76025697-A	0.4196	8E-25		0.03721628	[0.03-0.044] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1952	chr5	179184487	179184488	rs76025697	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	5q35.3	MAML1	rs76025697-A	0.4196	6E-12		0.02506105	[0.018-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1952	chr5	179201463	179201464	rs72807324	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		MAML1	rs72807324-?	NR	3E-8	(female)	0.414561	[NR] unit increase	Affymetrix [NR] (imputed)	N
1952	chr5	179210114	179210115	rs55882075	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	5q35.3	MAML1	rs55882075-G	0.4193	1E-23		0.03620913	[0.029-0.043] unit increase	Affymetrix [~ 2500000] (imputed)	N
1952	chr5	179228622	179228623	rs272440	27479909	Hyde CL	2016-08-01	Nat Genet	Identification of 15 genetic loci associated with risk of major depression in individuals of European descent.	Major depressive disorder	84,847 European ancestry cases, 241,266 European ancestry controls	45,773 European ancestry cases, 106,354 European ancestry controls	5q35.3	MGAT4B	rs272440-G	0.998687	6E-7		0.4807	[0.27-0.69] unit decrease	Illumina [1220000] (imputed)	N
1952	chr5	179229150	179229151	rs58413676	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	5q35.3	MGAT4B	rs58413676-A	0.98421875	3E-62	(MGAT4B, 7141_21_3)	1.6576216	[1.47-1.85] unit increase	Illumina [> 1000000] (imputed)	N
1952	chr5	179230320	179230321	rs6883116	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	5q35.3	MGAT4B	rs6883116-C	0.416896	1E-10		0.014759501	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
1952	chr5	179230320	179230321	rs6883116	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	5q35.3	MGAT4B	rs6883116-C	0.417106	3E-14		0.017169124	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1952	chr5	179230320	179230321	rs6883116	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	5q35.3	NR	rs6883116-C	0.40137	7E-18				Affymetrix, Illumina [23467995] (imputed)	N
1952	chr5	179230320	179230321	rs6883116	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	5q35.3	NR	rs6883116-C	0.417349	8E-21		0.017985	[0.014-0.022] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1952	chr5	179232063	179232064	rs73351608	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5q35.3	MGAT4B	rs73351608-T	0.022	2E-29	(Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B, MGAT4B.7141.21.3)	0.96	[0.78-1.14] unit decrease	Affymetrix [10572788] (imputed)	N
1952	chr5	179234643	179234644	rs191403502	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	5q35.3		rs191403502-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1952	chr5	179235545	179235546	rs59108011	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MGAT4B	5,350 Icelandic ancestry individuals	NA	5q35.3		rs59108011-A	0.01547	4E-98		1.5168	[1.38-1.66] unit decrease	Illumina [7506463] (imputed)	N
1952	chr5	179237967	179237968	rs62406226	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	5q35.3	SQSTM1	rs62406226-T	0.343365	3E-9		0.014039155	[0.0094-0.0187] unit decrease	Affymetrix [93095623] (imputed)	N
1952	chr5	179237967	179237968	rs62406226	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	5q35.3	NR	rs62406226-T	0.34183	5E-18		0.017905	[0.014-0.022] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
1952	chr5	179238260	179238261	rs72807343	24162737	Lambert JC	2013-10-27	Nat Genet	Meta-analysis of 74,046 individuals identifies 11 new susceptibility loci for Alzheimer's disease.	Alzheimer's disease (late onset)	17,008 European ancestry cases, 37,154 European ancestry controls	8,572 European ancestry cases, 11,312 European ancestry controls	5q35.3	SQSTM1	rs72807343-T	0.016	7E-7		1.35	[1.20-1.52]	Illumina [7055881] (imputed)	N
1952	chr5	179240909	179240910	rs10516140	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	5q35.3		rs10516140-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1952	chr5	179242417	179242418	rs56998314	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	5q35.3		rs56998314-G	NR	1E-8		0.0134	[0.0087-0.0181] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
1952	chr5	179242417	179242418	rs56998314	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	334,468 European ancestry, NR ancestry individuals	NA	5q35.3		rs56998314-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1952	chr5	179242417	179242418	rs56998314	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	5q35.3	SQSTM1	rs56998314-G	0.437523	8E-31		0.0261452	[0.022-0.031] unit increase	Affymetrix [93095623] (imputed)	N
1952	chr5	179244301	179244302	rs11742873	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	5q35.3	NR	rs11742873-T	0.837406	2E-10		0.01661	[0.012-0.022] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1952	chr5	179285751	179285752	rs10060182	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	5q35.3	C5orf45	rs10060182-A	0.301117	4E-11		0.016050506	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1952	chr5	179290844	179290845	rs30386	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	5q35.3	TBC1D9B	rs30386-G	0.44	4E-8		5.51	z-score increase	Affymetrix [4314223] (imputed)	N
1952	chr5	179298341	179298342	rs248252	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	5q35.3	Intergenic	rs248252-C	0.4218	2E-8	(MTAG)	0.0094	[0.0061-0.0127] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1953	chr5	179331222	179331222	rs199880927	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	5q35.3		rs199880927-CCTTT	NR	3E-9		0.0145	[0.0096-0.0194] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
1953	chr5	179333232	179333233	rs155795	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	5q35.3	NR	rs155795-C	NR	4E-9		0.0145	[0.0096-0.0194] unit increase	Affymetrix [9000000] (imputed)	N
1953	chr5	179334051	179334052	rs155797	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	5q35.3	NR	rs155797-?	NR	2E-9	(white matter)			NR [9227495] (imputed)	N
1953	chr5	179335059	179335060	rs152234	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	5q35.3	NR	rs152234-?	NR	2E-12	(white matter)			NR [9227495] (imputed)	N
1953	chr5	179345995	179345996	rs26074	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	5q35.3		rs26074-?	NR	5E-10				NR [~ 8900000] (imputed)	N
1953	chr5	179401541	179401542	rs17079875	31219150	Ekenberg C	2019-06-13	J Infect Dis	Single nucleotide polymorphisms in HLA alleles are associated with HIV-1 viral load in demographically diverse, ART-naive participants from the START trial.	Pre-treatment viral load in HIV-1 infection	1,398 European ancestry individuals, 572 Black individuals, 418 Hispanic individuals, 13 Asian ancestry individuals, 39 individuals	NA	5q35.3	RNF130	rs17079875-A	0.07	9E-16		0.37	[0.28-0.46] unit decrease	Affymetrix [339439]	N
1953	chr5	179411476	179411477	rs12153395	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	5q35.3		rs12153395-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1953	chr5	179411476	179411477	rs12153395	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	NA	5q35.3	RNF130	rs12153395-G	0.8853	1E-11		0.3303	[0.24-0.43] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1954	chr5	179471200	179471201	rs13161895	21347282	Lettre G	2011-02-10	PLoS Genet	Genome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project.	LDL cholesterol	7,565 African American individuals	3,789 African American and Afro-Caribbean individuals	5q35.3	RNF130	rs13161895-T	0.08	4E-7		0.147	[0.09-0.204] unit increase	Affymetrix [~ 2740000] (imputed)	N
1954	chr5	179511042	179511043	rs6601080	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	5q35.3	NR	rs6601080-A	0.6762	2E-8		1.036	[1.02-1.05]	Affymetrix, Illumina [NR] (imputed)	N
1954	chr5	179515596	179515597	rs4290977	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5q35.3		rs4290977-?	NR	3E-12				NR [~ 8900000] (imputed)	N
1954	chr5	179518680	179518681	rs2083968	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	5q35.3		rs2083968-A	0.47	1E-10		6.43	z score increase	Affymetrix [9061022] (imputed)	N
1954	chr5	179540095	179540096	rs111163387	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	5q35.3		rs111163387-T	0.5	2E-8		5.61	z score increase	Affymetrix [9061022] (imputed)	N
1954	chr5	179540095	179540096	rs111163387	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	5q35.3	NR	rs111163387-T	0.4932	2E-8				NR [9056863] (imputed)	N
1954	chr5	179554601	179554602	rs57288534	32399468	Melhuish Beaupre LM	2020-01-08	Mol Neuropsychiatry	Genome-Wide Association Study of Sleep Disturbances in Depressive Disorders.	Sleep disturbance (increased sleep) in depressive disorders	128 European ancestry cases, 223 European ancestry controls	NA	5q35.3		rs57288534-?	NR	9E-6		3.309		Illumina [5932083] (imputed)	N
1954	chr5	179563358	179563359	rs55638756	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	5q35.3		rs55638756-T	0.45	2E-8		5.6	z score increase	Affymetrix [9061022] (imputed)	N
1954	chr5	179563358	179563359	rs55638756	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	5q35.3	NR	rs55638756-T	0.4455	1E-8				NR [9056863] (imputed)	N
1955	chr5	179575266	179575267	rs115019932	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	5q35.3	RASGEF1C	rs115019932-G	0.0257016783572068	9E-6	(G_Ruminococcus_HB)	1.00822	[0.56-1.45] unit decrease	Illumina [7711310] (imputed)	N
1955	chr5	179598770	179598771	rs79898473	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	5q35.3	RASGEF1C	rs79898473-T	0.671	1E-12		0.0192	[0.014-0.024] unit decrease	Affymetrix [19819130] (imputed)	N
1955	chr5	179598770	179598771	rs79898473	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	5q35.3	RASGEF1C	rs79898473-T	0.671	2E-33		0.0308	[0.026-0.036] unit decrease	Affymetrix [19819130] (imputed)	N
1955	chr5	179598770	179598771	rs79898473	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	5q35.3	RASGEF1C	rs79898473-T	0.671	3E-8		0.014	[0.0091-0.0189] unit decrease	Affymetrix [19819130] (imputed)	N
1955	chr5	179598770	179598771	rs79898473	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	5q35.3		rs79898473-?	NR	5E-46				NR [~ 8900000] (imputed)	N
1955	chr5	179600377	179600378	rs4700719	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	5q35.3	RASGEF1C	rs4700719-A	0.269579367476655	3E-6	(G_Clostridium_XVIII_RNT)	0.11353	[0.066-0.161] unit decrease	Illumina [7711310] (imputed)	N
1955	chr5	179608359	179608360	rs11749727	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Initial pursuit acceleration	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	5q35.3	RASGEF1C	rs11749727-C	0.4066	6E-6	(EA)			Illumina [4404269] (imputed)	N
1955	chr5	179623636	179623637	rs7720553	31668963	Bay CP	2019-09-27	J Clin Densitom	Genome-Wide Association Analysis of Longitudinal Bone Mineral Content Data From the Iowa Bone Development Study.	Hip bone mineral content accrual during adolescent growth spurt	125 women, 133 men	NA	5q35.3	NR	rs7720553-A	0.13	7E-6	(Male)	1.1	[0.65-1.55] g decrease	Illumina [509842]	N
1955	chr5	179645869	179645870	rs4700924	32121467	Adewuyi EO	2020-02-29	Genes (Basel)	Shared Molecular Genetic Mechanisms Underlie Endometriosis and Migraine Comorbidity.	Endometriosis or migraine	17,054 European and Japanese ancestry endometriosis cases, 29,208 European ancestry migraine cases, 191,858 European and Japanese ancestry controls, 172,931 European ancestry controls	NA	5q35.3	NR	rs4700924-A	NR	3E-6	(random effect)	1.0416667	NR	NR [6904914] (imputed)	N
1955	chr5	179657554	179657555	rs142143177	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q35.3	NR	rs142143177-C	0.01045	2E-8	(LTF)	0.3867	NR unit decrease	Illumina [1671387] (imputed)	N
1955	chr5	179694067	179694068	rs13185784	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	TRAIL levels	8,186 Finnish ancestry individuals	NA	5q35.3	NR	rs13185784-G		4E-6		0.0846	[0.049-0.12] SD units decrease	NR [10700000] (imputed)	N
1956	chr5	179720924	179720924	rs532375187	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	5q35.3	CTB-129O4.1	rs532375187-TCTC	NR	4E-9		0.0188412	[0.013-0.025] unit increase	Affymetrix [321114] (imputed)	N
1956	chr5	179727398	179727399	rs11748619	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5q35.3		rs11748619-?	NR	6E-51				NR [~ 8900000] (imputed)	N
1956	chr5	179729008	179729009	rs72811030	29555444	Hamer MA	2018-03-16	J Invest Dermatol	Facial Wrinkles in Europeans: a Genome-Wide Association Study.	Facial wrinkles	3,513 north-western European ancestry individuals	599 north-western European ancestry individuals	5q35.3	NR	rs72811030-A	0.38	4E-6		4.61	[NR] z score increase	Illumina [9009554] (imputed)	N
1956	chr5	179729518	179729519	rs1035411	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	5q35.3		rs1035411-G	NR	6E-34		0.0185	[0.016-0.021] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1956	chr5	179730003	179730004	rs2080955	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	5q35.3	GFPT2	rs2080955-T	NR	3E-9		0.0186238	[0.012-0.025] unit decrease	Affymetrix [323123] (imputed)	N
1956	chr5	179731013	179731014	rs6879260	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	5q35.3	GFPT2	rs6879260-T	0.39	2E-9		0.022	[NR] unit decrease	Affymetrix, Illumina [2834208] (imputed)	N
1956	chr5	179736612	179736613	rs2080957	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	5q35.3	NR	rs2080957-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
1956	chr5	179742207	179742208	rs55840512	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		GFPT2	rs55840512-?	NR	4E-8	(female)	2.87767	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1956	chr5	179742262	179742263	rs190432524	28521775	Manichaikul A	2017-05-18	Respir Res	Genome-wide association study of subclinical interstitial lung disease in MESA.	Subclinical trait of interstitial lung disease (basilar peel-core ratio of high attentuation areas on CT scan)	2,434 European ancestry individuals, 2,470 African American individuals, 2,065 Hispanic individuals, 702 Chinese ancestry individuals	NA	5q35.3	GFPT2	rs190432524-T	0.009	5E-11	(EA)	0.318	[0.22-0.41] unit increase	Affymetrix [at least 897981] (imputed)	N
1956	chr5	179745606	179745607	rs2303009	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	5q35.3	MAPK9	rs2303009-A	0.85484375	1E-6	(MAPK9, 9760_13_3)	0.16738093	[0.1-0.235] unit decrease	Illumina [> 1000000] (imputed)	N
1956	chr5	179748206	179748207	rs7720626	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	5q35.3	NR	rs7720626-?	NR	6E-10				Affymetrix [~ 8270000] (imputed)	N
1956	chr5	179764697	179764698	rs878706	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	5q35.3		rs878706-G	0.327132	1E-8		0.0123003	[0.008-0.0166] unit decrease	Illumina [13479295] (imputed)	N
1956	chr5	179794207	179794208	rs10464059	20070850	Edwards TL	2010-01-13	Ann Hum Genet	Genome-wide association study confirms SNPs in SNCA and the MAPT region as common risk factors for Parkinson disease.	Parkinson's disease	1,752 European ancestry cases, 1,745 European ancestry controls	NA	5q35.3	NR	rs10464059-A	NR	3E-6		1.33	[1.19-1.52]	Illumina [495715] (imputed)	N
1956	chr5	179812667	179812668	rs10479469	21897333	Irvin MR	2011-12-01	Pharmacogenet Genomics	Genes linked to energy metabolism and immunoregulatory mechanisms are associated with subcutaneous adipose tissue distribution in HIV-infected men.	Fat distribution (HIV)	192 European ancestry male cases	NA	5q35.3	GFPT2	rs10479469-G	0.33	2E-6	(univariate, arm)			Illumina [319818]	N
1957	chr5	179839747	179839748	rs56055373	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (hospitalized covid vs population)	613 European ancestry cases, 680,416 European ancestry controls, 140 Hispanic or Latin American cases, 94,327 Hispanic or Latin American controls, 49 Black or African American cases, 22,410 Black or African American controls	NA	5q35.3		rs56055373-?	NR	8E-6		0.5038964	[0.28-0.72] unit decrease	Illumina [9875426] (imputed)	N
1957	chr5	179860166	179860167	rs34228803	31596875	Traylor M	2019-10-09	PLoS One	Genetic associations with radiological damage in rheumatoid arthritis: Meta-analysis of seven genome-wide association studies of 2,775 cases.	Joint damage in rheumatoid arthritis	2,527 European ancestry individuals, 196 African ancestry individuals, 52 individuals	NA	5q35.3	intergenic	rs34228803-?	NR	3E-6				Affymetrix, Illumina [4802696] (imputed)	N
1957	chr5	179883301	179883302	rs6862108	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	5q35.3	NR	rs6862108-?	NR	4E-17				Affymetrix [NR]	N
1957	chr5	179912035	179912036	rs60982503	30557369	Yodsurang V	2018-12-17	PLoS One	Genome-wide association study (GWAS) of ovarian cancer in Japanese predicted regulatory variants in 22q13.1.	Ovarian cancer	681 Japanese ancestry cases, 17,492 Japanese ancestry controls	NA	5q35.3	CNOT6	rs60982503-G	0.7345	5E-6		1.384	[1.204-1.591]	Illumina [7521072] (imputed)	N
1957	chr5	179929918	179929919	rs7723088	33824429	Fjukstad KK	2021-04-06	Pharmacogenomics J	Genetic variants associated with cardiometabolic abnormalities during treatment with selective serotonin reuptake inhibitors: a genome-wide association study.	Triglyceride levels x SSRI levels (escitalopram or citalopram) interaction in schizophrenia or bipolar disorder	181 European ancestry individuals	NA	5q35.3	CNOT6	rs7723088-G	NR	9E-6		5.15361	[2.95-7.35] unit decrease	Illumina [NR] (imputed)	N
1958	chr5	179974478	179974479	rs78183295	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	5q35.3	FLT4	rs78183295-C	0.74890625	6E-13	(FLT4, 2358_19_2)	0.20398813	[0.15-0.26] unit increase	Illumina [> 1000000] (imputed)	N
1958	chr5	179995230	179995232	rs373962169	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	5q35.3	CNOT6	rs373962169-C	0.535256	2E-11		0.015213801	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1958	chr5	179999715	179999715	rs528927627	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	5q35.3	CNOT6	rs528927627-CT	0.325764	6E-15		0.01867347	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1958	chr5	180017642	180017643	rs142342609	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 130,976 European ancestry men, up to 164,238  African American, South Asian, East Asian and Hispanic ancestry men	up to 62,500 European ancestry men	5q35.3	SCGB3A1	rs142342609-T	0.001	1E-6		0.3509	[0.21-0.49] unit increase	Affymetrix, Illumina [at least 228985]	N
1958	chr5	180017642	180017643	rs142342609	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 130,976 European ancestry men	up to 62,500 European ancestry men	5q35.3	SCGB3A1	rs142342609-T	0.0013	7E-7		0.3797	[0.23-0.53] unit increase	Affymetrix, Illumina [at least 228985]	N
1958	chr5	180017642	180017643	rs142342609	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	288,492 European ancestry individuals, up to 15,687 African American individuals, up to 29,315 South Asian ancestry individuals, up to 6,800 East Asian ancestry individuals, up to 4,075 Hispanic ancestry individuals	132,177 European ancestry individuals	5q35.3	SCGB3A1	rs142342609-T	9.00000000000011E-4	9E-6		0.2336	[0.13-0.34] unit increase	Affymetrix, Illumina [at least 228985]	N
1958	chr5	180025596	180025597	rs79839831	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	5q35.3	NR	rs79839831-C	0.01742	2E-8	(PCK1)	0.1817	NR unit increase	Illumina [1671387] (imputed)	N
1958	chr5	180027276	180027277	rs10065018	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	5q35.3	NR	rs10065018-C	0.818815	3E-13		0.018105	[0.013-0.023] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1958	chr5	180028742	180028743	rs2279622	29953918	Deng C	2018-06-25	Gene	Identification of three novel loci of ALDH2 Gene for Serum Folate levels in a Male Chinese Population by Genome-Wide Association Study.	Serum folate levels	1,999 Han Chinese ancestry individuals	NA	5q35.3	FLT4	rs2279622-?	NR	7E-6				Illumina [1940243] (imputed)	N
1958	chr5	180032499	180032500	rs1565818	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	5q35.3	FLT4	rs1565818-C	0.110953	4E-10		0.022457363	[0.015-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
1958	chr5	180047411	180047412	rs382266	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	5q35.3	SCGB3A1	rs382266-C	0.9240625	4E-7	(SCGB3A1, 6252_62_3)	0.23534936	[0.14-0.33] unit increase	Illumina [> 1000000] (imputed)	N
1958	chr5	180057292	180057293	rs34221241	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FLT4	5,365 Icelandic ancestry individuals	NA	5q35.3		rs34221241-C	0.1239	5E-33		0.339403	[0.28-0.39] unit decrease	Illumina [7506463] (imputed)	N
1958	chr5	180057292	180057293	rs34221241	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	5q35.3	FLT4	rs34221241-C	0.104	2E-19	(Vascular endothelial growth factor receptor 3, FLT4.2358.19.2)	0.36	[0.28-0.44] unit decrease	Affymetrix [10572788] (imputed)	N
1958	chr5	180059245	180059246	rs62407083	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	5q35.3		rs62407083-T	NR	4E-8		0.0124	[0.0079-0.0169] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
1958	chr5	180065454	180065455	rs4700745	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	5q35.3	NR	rs4700745-G	NR	1E-10		0.0163	[0.011-0.021] unit increase	Affymetrix [9000000] (imputed)	N
1958	chr5	180071248	180071249	rs307810	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	5q35.3		rs307810-A	NR	2E-9		0.014	[0.0095-0.0185] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
1958	chr5	180083478	180083479	rs112967731	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,963 Sub-Saharan African ancestry females	NA	5q35.3		rs112967731-G	0.911752	6E-7		0.0231208	[0.014-0.032] unit decrease	Illumina [13900000] (imputed)	N
1959	chr5	180119134	180119135	rs10078787	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin I concentration	12,730 European ancestry individuals	NA	5q35.3		rs10078787-?	NR	6E-6		0.13	[0.073-0.187] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1959	chr5	180142162	180142163	rs7717059	31324189	Kim W	2019-07-19	Respir Res	DSP variants may be associated with longitudinal change in quantitative emphysema.	Emphysema annual change measurement in smokers (percent low attenuation area)	4,427 European ancestry individuals, 1,158 African American individuals	NA	5q35.3	OR2Y1	rs7717059-T	NR	8E-6		0.088	[0.049-0.127] unit increase	Illumina [NR] (imputed)	N
1959	chr5	180170818	180170819	rs12517906	19851299	Johansson A	2009-10-22	Obesity (Silver Spring)	Linkage and genome-wide association analysis of obesity-related phenotypes: association of weight with the MGAT1 gene.	Weight	Up to 3,925 European individuals	NA	5q35.3	MGAT1	rs12517906-G	0.85	7E-8	(females)	2.96	[NR] kg decrease	Illumina [318237]	N
1959	chr5	180170818	180170819	rs12517906	19851299	Johansson A	2009-10-22	Obesity (Silver Spring)	Linkage and genome-wide association analysis of obesity-related phenotypes: association of weight with the MGAT1 gene.	Body mass index	1,079 South Tyrolean individuals, 790 Dutch founder individuals, 2,060 European ancestry individuals	NA	5q35.3	NR	rs12517906-G	0.85	6E-6	(females)	0.16	[NR] kg decrease	Illumina [318237]	N
1959	chr5	180189919	180189920	rs605721	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	5q35.3	NR	rs605721-?	NR	4E-6				Affymetrix [NR]	N
1959	chr5	180194004	180194005	rs2101006	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 4 levels	252 European ancestry individuals	NA	5q35.3		rs2101006-G	NR	4E-6		0.93432	[0.54-1.32] unit increase	Illumina [NR] (imputed)	N
1959	chr5	180205937	180205938	rs6859974	23400010	Del-Aguila JL	2013-02-12	Pharmacogenomics J	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NA	5q35.3	MGAT1	rs6859974-T	0.14	8E-6	(EA-glucose response)	3.67	[2.06-5.28] mg/dL increase	Affymetrix, Illumina [> 2000000] (imputed)	N
1959	chr5	180209453	180209454	rs655437	34338756	Ahlberg G	2021-07-29	Eur Heart J	Genome-wide association study identifies 18 novel loci associated with left atrial volume and function.	Left atrial passive emptying fraction	35,658 British ancestry individuals	NA	5q35.3		rs655437-?	NR	4E-10		0.44	[0.3-0.58] unit increase	Affymetrix [10600000] (imputed)	N
1959	chr5	180213877	180213878	rs1038143	32759990	Carlson JC	2020-08-05	J Hum Genet	Genome-wide association studies in Samoans give insight into the genetic architecture of fasting serum lipid levels.	HDL cholesterol levels	2,849 Samoan (founder/genetic isolate) individuals	1,798 Samoan and American Samoan (founder/genetic isolate) individuals	5q35.3	MGAT1	rs1038143-A	0.309	3E-7		4.63	NR z score decrease	Affymetrix [659492]	N
1959	chr5	180222311	180222312	rs72648854	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	5q35.3	NR	rs72648854-C	0.05125500000000005	3E-9		0.0189541	[0.013-0.025] unit increase	Affymetrix [16585854] (imputed)	N
1959	chr5	180222311	180222312	rs72648854	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	5q35.3	NR	rs72648854-C	0.05125500000000005	2E-6		0.017899	[0.011-0.025] unit increase	Affymetrix [16585866] (imputed)	N
1959	chr5	180223063	180223064	rs72650616	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5q35.3		rs72650616-?	NR	5E-10				NR [~ 8900000] (imputed)	N
1960	chr5	180225918	180225919	rs62405458	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	5q35.3	MGAT1	rs62405458-C	0.817329	8E-9		0.0147331	[0.0097-0.0197] unit increase	Affymetrix [NR] (imputed)	N
1960	chr5	180226515	180226516	rs6885157	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	5q35.3	NR	rs6885157-G	0.7828	5E-8		0.0372	[0.024-0.051] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1960	chr5	180226672	180226673	rs655601	19197348	Lowe JK	2009-02-06	PLoS Genet	Genome-wide association studies in an isolated founder population from the Pacific Island of Kosrae.	Quantitative traits	2,906 Kosraen individuals	NA	5q35.3	MGAT1	rs655601-A	0.47	5E-6	(HDL-C)	0.23	[NR] mg/dL increase	Affymetrix [408775]	N
1960	chr5	180255962	180255963	rs4700988	33706416	Slob EMA	2021-03-11	Pediatr Allergy Immunol	Genome-wide association studies of exacerbations in children using long-acting beta2-agonists.	Childhood asthma exacerbations in long-acting beta2-agonist treatment	642 European, Hispanic, African, Asian or unknown ancestry cases, 783 European, Hispanic, African, Asian or unknown ancestry controls	NA	5q35.3	LINC00847	rs4700988-C	0.262	2E-6		2.83	[1.84-4.36]	Affymetrix, Illumina [82996] (imputed)	N
1960	chr5	180299981	180299982	rs111850005	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	5q35.3	NR	rs111850005-?	NR	8E-6		4.459	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1960	chr5	180308440	180308441	rs188238483	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	5q35.3		rs188238483-C	NR	4E-10		0.069	[0.047-0.091] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
1960	chr5	180308440	180308441	rs188238483	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	5q35.3	NR	rs188238483-C	NR	8E-10		0.0749	[0.051-0.099] unit decrease	Affymetrix [9000000] (imputed)	N
1960	chr5	180350166	180350167	rs62406718	29559693	Zengini E	2018-03-20	Nat Genet	Genome-wide analyses using UK Biobank data provide insights into the genetic architecture of osteoarthritis.	Osteoarthritis of the knee (hospital diagnosed)	4,462 European ancestry cases, 17,885 European ancestry controls	4,672 Icelandic ancestry cases, 172,791 Icelandic ancestry controls	5q35.3	NR	rs62406718-A	0.338796	1E-6		1.0967317	[1.06-1.14]	Affymetrix [16309199] (imputed)	N
1960	chr5	180350166	180350167	rs62406718	29559693	Zengini E	2018-03-20	Nat Genet	Genome-wide analyses using UK Biobank data provide insights into the genetic architecture of osteoarthritis.	Osteoarthritis of the hip or knee (hospital diagnosed)	6,586 European ancestry cases, 26,384 European ancestry controls	9,429 Icelandic ancestry cases, 199.421 Icelandic ancestry controls	5q35.3	NR	rs62406718-A	0.33845499999999995	1E-6		1.0761946	[1.04-1.11]	Affymetrix [16396089] (imputed)	N
1961	chr5	180365102	180365103	rs2387717	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein BTNL8	5,366 Icelandic ancestry individuals	NA	5q35.3		rs2387717-A	0.4869	5E-51		0.284263	[0.25-0.32] unit decrease	Illumina [7506463] (imputed)	N
1961	chr5	180416173	180416174	rs138354839	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	5q35.3	BTNL3	rs138354839-C	0.9849	1E-12		0.0600103	[0.044-0.076] unit increase	Affymetrix [NR] (imputed)	N
1961	chr5	180416173	180416174	rs138354839	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	5q35.3	BTNL3	rs138354839-C	0.984897	1E-14		0.0669853	[0.05-0.084] unit increase	Affymetrix [NR] (imputed)	N
1961	chr5	180432289	180432290	rs10068582	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein BTNL8	5,366 Icelandic ancestry individuals	NA	5q35.3		rs10068582-C	0.113	3E-33		0.3564	[0.3-0.41] unit increase	Illumina [7506463] (imputed)	N
1961	chr5	180432563	180432564	rs73815153	29093273	Almgren P	2017-11-02	JCI Insight	Genetic determinants of circulating GIP and GLP-1 concentrations.	GIP levels in response to oral glucose tolerance test (120 minutes)	3,344 Swedish ancestry individuals	4,905 Finnish ancestry individuals	5q35.3	BTNL3	rs73815153-T	0.038	3E-6		0.088	[0.051-0.125] unit increase	Illumina [at least 81396]	N
1961	chr5	180439649	180439650	rs7721375	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	5q35.3	BTNL8	rs7721375-C	0.50671875	1E-28	(BTNL8, 9026_40_3)	0.27285886	[0.23-0.32] unit increase	Illumina [> 1000000] (imputed)	N
1962	chr5	180535761	180535762	rs13180712	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	5q35.3	BTNL9	rs13180712-?	NR	5E-6	(CE 18:2)	0.17021142	[0.097-0.244] unit increase	Affymetrix [at least 2500000] (imputed)	N
1962	chr5	180579243	180579244	rs2546433	30843173	Popovic M	2019-03-07	J Endocrinol Invest	Genome-wide meta-analysis identifies novel loci associated with free triiodothyronine and thyroid-stimulating hormone.	Thyroid stimulating hormone levels	626 Croatian individuals, 509 Korculan (founder/genetic isolate) individuals, 596 Vis (founder/genetic isolate) individuals	NA	5q35.3	OR2V2	rs2546433-T	0.49	1E-6		0.17	[0.11-0.23] mIU/L decrease	Illumina [7411206] (imputed)	N
1962	chr5	180595137	180595138	rs1279750	21507922	Ramsuran V	2011-05-01	Clin Infect Dis	Duffy-null-associated low neutrophil counts influence HIV-1 susceptibility in high-risk South African black women.	Platelet count	115 African ancestry HIV-negative individuals	NA	5q35.3	AC008620.2	rs1279750-?	NR	2E-6				Illumina [874956]	N
1963	chr5	180637220	180637221	rs254448	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	5q35.3		rs254448-?	NR	3E-15				NR [~ 8900000] (imputed)	N
1963	chr5	180645352	180645353	rs28488569	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	5q35.3	TRIM41	rs28488569-G	NR	2E-8		0.026195	[0.017-0.035] unit decrease	Affymetrix [321114] (imputed)	N
1963	chr5	180645424	180645425	rs11746028	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	5q35.3	TRIM41	rs11746028-T	NR	8E-9		0.0237794	[0.016-0.032] unit decrease	Affymetrix [323858] (imputed)	N
1963	chr5	180645424	180645425	rs11746028	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	5q35.3	TRIM41	rs11746028-T	NR	2E-9		0.0247379	[0.017-0.033] unit decrease	Affymetrix [127266] (imputed)	N
1963	chr5	180645424	180645425	rs11746028	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	5q35.3	NR	rs11746028-?	NR	9E-14				Affymetrix [~ 8270000] (imputed)	N
1963	chr5	180645424	180645425	rs11746028	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	5q35.3	NR	rs11746028-?	NR	5E-14				Affymetrix [~ 8270000] (imputed)	N
1963	chr5	180645424	180645425	rs11746028	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	5q35.3		rs11746028-?	NR	6E-14				NR [~ 8900000] (imputed)	N
1963	chr5	180653038	180653039	rs7727787	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	5q35.3		rs7727787-?	NR	1E-11				NR [~ 8900000] (imputed)	N
1963	chr5	180661979	180661980	rs17714046	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	5q35.3	TRIM41	rs17714046-T	0.953552	1E-10		0.00356848	[0.0025-0.0046] unit decrease	Affymetrix [13995440] (imputed)	N
1963	chr5	180661979	180661980	rs17714046	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	5q35.3	NR	rs17714046-C	NR	5E-13		0.041	[0.03-0.052] unit increase	Affymetrix [9000000] (imputed)	N
1963	chr5	180661979	180661980	rs17714046	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	5q35.3		rs17714046-?	NR	1E-10				NR [~ 8900000] (imputed)	N
586	chr6	183899	183900	rs6937355	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-10 levels	7,681 Finnish ancestry individuals	NA	6p25.3	NR	rs6937355-C		2E-6		0.0958	[0.057-0.135] SD units decrease	NR [10700000] (imputed)	N
586	chr6	203721	203722	rs80014302	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	6p25.3	NR	rs80014302-G	NR	3E-12		0.0403	[0.029-0.052] unit increase	Affymetrix [9000000] (imputed)	N
586	chr6	209032	209033	rs80172423	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	6p25.3	NR	rs80172423-A	NR	2E-9		0.0534	[0.036-0.071] unit decrease	Affymetrix [9000000] (imputed)	N
586	chr6	209158	209159	rs11242709	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	6p25.3		rs11242709-?	NR	9E-9				NR [~ 8900000] (imputed)	N
586	chr6	209158	209159	rs11242709	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	6p25.3	RP3-416J7.4	rs11242709-T	0.208	3E-13		0.03281146	[0.024-0.042] unit decrease	Affymetrix [~ 2500000] (imputed)	N
586	chr6	209158	209159	rs11242709	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	6p25.3	RP3-416J7.4	rs11242709-T	0.208	2E-13		0.0332309	[0.024-0.042] unit decrease	Affymetrix [~ 2500000] (imputed)	N
586	chr6	209979	209980	rs17133787	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6p25.3		rs17133787-?	NR	4E-7		0.941135	[0.92-0.96]	NR [685523]	N
586	chr6	211782	211783	rs6596834	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	6p25.3		rs6596834-C	0.229351	4E-14		0.020515507	[0.015-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
586	chr6	221145	221146	rs9501753	24554482	Leger PD	2014-02-20	J Neurovirol	Genome-wide association study of peripheral neuropathy with D-drug-containing regimens in AIDS Clinical Trials Group protocol 384.	Response to anti-retroviral therapy (ddI/d4T) in HIV-1 infection (Grade 3 peripheral neuropathy)	8 European ancestry cases, 12 African American cases, 3 Hispanic cases, 85 European ancestry controls, 49 African American controls, 30 Hispanic controls	NA	6p25.3	intergenic	rs9501753-?		1E-8	(EA)		[NR]	Illumina [936149]	N
586	chr6	222600	222601	rs6916016	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Non-albumin protein levels	98,538 Japanese ancestry individuals	NA	6p25.3	LOC285766, DUSP22	rs6916016-?	NR	2E-19		0.04515	[0.035-0.055] unit increase novel	Illumina [6108953] (imputed)	N
586	chr6	223038	223039	rs2143738	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	6p25.3		rs2143738-C	NR	2E-31		0.0345	[0.029-0.04] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
586	chr6	223496	223497	rs17744744	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	6p25.3	NR	rs17744744-T	NR	4E-14		0.0717	[0.053-0.09] unit increase	Affymetrix [9000000] (imputed)	N
586	chr6	226283	226284	rs2235874	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Low tan response	46,768 European ancestry low tanning cases, 74,528 European ancestry moderate and high tanning controls	15,547 European ancestry low tanning  cases, 39,835 European moderate and high tanning ancestry controls	6p25.3	NR	rs2235874-G	NR	9E-20		0.085	[0.03-0.14] unit decrease	Affymetrix [8351141] (imputed)	N
586	chr6	228344	228345	rs12212839	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	6p25.3	NR	rs12212839-G	NR	3E-9		0.0274	[0.018-0.036] unit increase	Affymetrix [9000000] (imputed)	N
586	chr6	228344	228345	rs12212839	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	6p25.3	NR	rs12212839-G	NR	1E-11		0.0312	[0.022-0.04] unit increase	Affymetrix [9000000] (imputed)	N
586	chr6	228466	228467	rs77809451	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,963 Sub-Saharan African ancestry females	NA	6p25.3		rs77809451-A	0.966023	2E-6		0.0348683	[0.021-0.049] unit increase	Illumina [13900000] (imputed)	N
586	chr6	231578	231579	rs73358088	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum total protein level	113,509 Japanese ancestry individuals	NA	6p25.3	LOC285766, DUSP22	rs73358088-?	NR	3E-17		0.03873	[0.03-0.048] unit increase novel	Illumina [6108953] (imputed)	N
586	chr6	231877	231878	rs72835315	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	6p25.3		rs72835315-C	0.058421	2E-9		0.029266896	[0.02-0.039] unit increase	Affymetrix [93095623] (imputed)	N
586	chr6	231877	231878	rs72835315	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p25.3		rs72835315-C	0.058418	6E-15		0.037782066	[0.028-0.047] unit increase	Affymetrix [93095623] (imputed)	N
586	chr6	233647	233648	rs74865759	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	133,321 East Asian ancestry individuals	NA	6p25.3		rs74865759-A	0.30211	1E-20		0.0380767	[0.03-0.046] unit increase	Illumina [13477433] (imputed)	N
586	chr6	237675	237676	rs7767355	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	6p25.3		rs7767355-?	NR	4E-153				NR [~ 8900000] (imputed)	N
586	chr6	239805	239806	rs79281532	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	6p25.3	NR	rs79281532-G	NR	8E-11		0.0366	[0.026-0.048] unit decrease	Affymetrix [9000000] (imputed)	N
586	chr6	239805	239806	rs79281532	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	6p25.3	NR	rs79281532-G	NR	1E-17		0.0482	[0.037-0.059] unit decrease	Affymetrix [9000000] (imputed)	N
586	chr6	240855	240856	rs9501778	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Albumin-globulin ratio	98,626 Japanese ancestry individuals	NA	6p25.3	LOC285766, DUSP22	rs9501778-?	NR	4E-12		0.03413	[0.024-0.044] unit decrease novel	Illumina [6108953] (imputed)	N
586	chr6	242311	242312	rs113773649	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Sunburns	approximately 344,000 European ancestry individuals	NA	6p25.3		rs113773649-?	NR	2E-11				NR [~ 8900000] (imputed)	N
586	chr6	243301	243302	rs9503037	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p25.3	LOC285766	rs9503037-A	0.693	1E-15		0.881	[0.85-0.91]	Illumina [11270530] (imputed)	N
586	chr6	245095	245096	rs6904506	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	6p25.3		rs6904506-C	NR	6E-31		0.0301	[0.025-0.035] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
586	chr6	245095	245096	rs6904506	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p25.3		rs6904506-T	0.911	1E-15				Affymetrix [10369434] (imputed)	N
586	chr6	245095	245096	rs6904506	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6p25.3		rs6904506-C	0.0887440000000001	4E-27		0.042965956	[0.035-0.051] unit decrease	Affymetrix [93095623] (imputed)	N
586	chr6	245095	245096	rs6904506	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	6p25.3		rs6904506-?	NR	1E-47				NR [~ 8900000] (imputed)	N
586	chr6	249713	249714	rs6942325	32912934	Li M	2020-09-10	J Am Soc Nephrol	Genome-Wide Meta-Analysis Identifies Three Novel Susceptibility Loci and Reveals Ethnic Heterogeneity of Genetic Susceptibility for IgA Nephropathy.	IgA nephropathy	2,628 Chinese ancestry cases, 11,563 Chinese ancestry controls	6,879 Han Chinese ancestry cases, 9,019 Han Chinese ancestry controls, 1,039 Italian ancestry cases, 1,289 Italian ancestry controls	6p25.3	IRF4	rs6942325-G	0.7645682983066013	3E-11	(East Asian)	1.162756	[1.11206852374203-1.21575366390916]	NR [3611808] (imputed)	N
586	chr6	249787	249788	rs12196306	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	6p25.3	MYLK4	rs12196306-G	0.81	2E-8				NR [> 9500000] (imputed)	N
586	chr6	252144	252145	rs6927090	33536424	Wang YF	2021-02-03	Nat Commun	Identification of 38 novel loci for systemic lupus erythematosus and genetic heterogeneity between ancestral groups.	Systemic lupus erythematosus	4,222 Han Chinese ancestry cases, 8,431 Han Chinese ancestry controls	NA	6p25.3	DUSP22, IRF4	rs6927090-T	NR	3E-10		1.233	[1.17-1.3]	Illumina [5719137] (imputed)	N
586	chr6	252144	252145	rs6927090	23303382	Hong KW	2013-01-10	J Hum Genet	Genome-wide association study of serum albumin:globulin ratio in Korean populations.	Hematology traits	4,637 East Asian ancestry individuals	4,205 East Asian ancestry individuals	6p25.3	IRF4	rs6927090-A	0.282	4E-6	(ALB/GLB)	0.015	[0.0091-0.0209] unit increase	Affymetrix [290659]	N
586	chr6	255561	255562	rs17133698	30498034	Terao C	2018-11-29	Proc Natl Acad Sci U S A	Genetic determinants and an epistasis of LILRA3 and HLA-B*52 in Takayasu arteritis.	Takayasu arteritis	411 Japanese ancestry cases, 2,158 Japanese ancestry controls	219 Japanese ancestry cases, 3,770 Japanese ancestry controls	6p25.3	DUSP22	rs17133698-C	0.68	3E-9		1.5151515	[1.32-1.75]	Illumina [5878075] (imputed)	N
586	chr6	255795	255796	rs9503071	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	6p25.3	NR	rs9503071-C	NR	9E-12		0.0256	[0.018-0.033] unit increase	Affymetrix [9000000] (imputed)	N
586	chr6	255795	255796	rs9503071	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	6p25.3	NR	rs9503071-C	NR	1E-14		0.0289	[0.022-0.036] unit increase	Affymetrix [9000000] (imputed)	N
587	chr6	279694	279695	rs734674	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	6p25.3		rs734674-G	0.0892619999999999	8E-11		0.026861409	[0.019-0.035] unit increase	Affymetrix [93095623] (imputed)	N
587	chr6	281675	281676	rs815577	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	6p25.3		rs815577-T	0.054472	4E-26		0.0537599	[0.044-0.064] unit decrease	Affymetrix [93095623] (imputed)	N
587	chr6	294267	294268	rs1511159	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6p25.3	DUSP22	rs1511159-T	0.658544	2E-14		0.025459744	[0.019-0.032] unit increase	Affymetrix [93095623] (imputed)	N
587	chr6	327330	327331	rs62390189	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		6p25.3	DUSP22	rs62390189-A	NR	1E-8		0.0755225	NR unit increase	NR [NR] (imputed)	N
587	chr6	376328	376329	rs55713716	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	6p25.3	intergenic	rs55713716-A	0.7493	3E-21		0.0474782	[0.038-0.057] unit increase	Affymetrix [~ 2500000] (imputed)	N
587	chr6	376328	376329	rs55713716	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	6p25.3	intergenic	rs55713716-A	0.7493	6E-19		0.04471118	[0.035-0.055] unit decrease	Affymetrix [~ 2500000] (imputed)	N
587	chr6	376328	376329	rs55713716	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	6p25.3	intergenic	rs55713716-A	0.7494	7E-21		0.04688527	[0.037-0.057] unit increase	Affymetrix [~ 2500000] (imputed)	N
587	chr6	376328	376329	rs55713716	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	6p25.3	intergenic	rs55713716-A	0.7493	1E-19		0.04562594	[0.036-0.055] unit increase	Affymetrix [~ 2500000] (imputed)	N
587	chr6	376328	376329	rs55713716	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	6p25.3	intergenic	rs55713716-A	0.7494	1E-21		0.04793884	[0.038-0.058] unit increase	Affymetrix [~ 2500000] (imputed)	N
587	chr6	380340	380341	rs6900267	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1a levels	3,522 Finnish ancestry individuals	NA	6p25.3	NR	rs6900267-C	NR	3E-6		0.2429	[0.14-0.34] SD units increase	NR [10700000] (imputed)	N
587	chr6	382536	382537	rs9405192	33310728	Ha E	2020-12-11	Ann Rheum Dis	Large-scale meta-analysis across East Asian and European populations updated genetic architecture and variant-driven biology of rheumatoid arthritis, identifying 11 novel susceptibility loci.	Rheumatoid arthritis	14,361 European ancestry cases, 43,923 European ancestry controls, 8,267 East Asian ancestry cases, 244,741 East Asian ancestry controls	NA	6p25.3		rs9405192-A	NR	9E-11		0.91	[0.89-0.94]	NR [13810676] (imputed)	N
587	chr6	382536	382537	rs9405192	32231244	Xie J	2020-03-30	Nat Commun	The genetic architecture of membranous nephropathy and its potential to improve non-invasive diagnosis.	Membranous nephropathy	2,150 European ancestry cases, 5,829 European ancestry controls, 1,612 East Asian ancestry cases, 1,970 East Asian ancestry controls	826 Chinese ancestry cases, 1,239 Chinese ancestry controls	6p25.3	IRF4	rs9405192-G	NR	1E-14		1.29	[1.21-1.37]	Illumina [~ 7000000] (imputed)	N
587	chr6	382536	382537	rs9405192	32231244	Xie J	2020-03-30	Nat Commun	The genetic architecture of membranous nephropathy and its potential to improve non-invasive diagnosis.	Membranous nephropathy	1,612 East Asian ancestry cases, 1,970 East Asian ancestry controls	NA	6p25.3	IRF4	rs9405192-G	0.42	9E-14		1.4	[1.28-1.53]	Illumina [~ 7000000] (imputed)	N
587	chr6	382536	382537	rs9405192	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	6p25.3		rs9405192-?	NR	1E-300				NR [~ 8900000] (imputed)	N
587	chr6	382558	382559	rs7773324	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	6p25.3	IRF4, DUSP22	rs7773324-A	0.6	6E-9	(EA)	1.0637687		Affymetrix, Illumina [~ 9000000] (imputed)	N
587	chr6	382558	382559	rs7773324	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	6p25.3	IRF4, DUSP22	rs7773324-A	0.6	1E-9	(EA)	1.0819273	[1.06-1.11]	Affymetrix, Illumina [~ 9000000] (imputed)	N
587	chr6	383545	383546	rs1033180	20190752	Dubois PC	2010-02-28	Nat Genet	Multiple common variants for celiac disease influencing immune gene expression.	Celiac disease	4,533 European ancestry cases, 10,750 European ancestry controls	4,918 European ancestry cases, 5,684 European ancestry controls	6p25.3	IRF4	rs1033180-A	0.08	6E-8		1.21	[1.13-1.29]	Illumina [292387]	N
587	chr6	385734	385735	rs2671427	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Brown vs. black hair color	269,394 British ancestry brown hair individuals, 14,526 British ancestry black hair individuals	NA	6p25.3	IRF4	rs2671427-T	0.3731	8E-20		1.146	NR	Affymetrix [9154080] (imputed)	N
587	chr6	385734	385735	rs2671427	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	6p25.3	IRF4	rs2671427-T	0.3731	5E-17		1.07	NR	Affymetrix [9154080] (imputed)	N
587	chr6	385734	385735	rs2671427	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		6p25.3	IRF4	rs2671427-C	NR	1E-9		0.038782	NR unit increase	NR [NR] (imputed)	N
587	chr6	386932	386933	rs74758148	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Brown vs. black hair color	269,394 British ancestry brown hair individuals, 14,526 British ancestry black hair individuals	NA	6p25.3	IRF4	rs74758148-A	0.04258	2E-14		1.326	NR	Affymetrix [9154080] (imputed)	N
587	chr6	386932	386933	rs74758148	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	6p25.3	IRF4	rs74758148-A	0.04255	2E-10		1.128	NR	Affymetrix [9154080] (imputed)	N
587	chr6	390657	390658	rs2797305	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	6p25.3	IRF4	rs2797305-T	0.096144	1E-14		0.029432338	[0.022-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
587	chr6	390657	390658	rs2797305	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6p25.3	IRF4	rs2797305-T	0.096162	1E-10		0.025800988	[0.018-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
587	chr6	390657	390658	rs2797305	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	6p25.3		rs2797305-?	NR	6E-24				NR [~ 8900000] (imputed)	N
587	chr6	391622	391623	rs6935510	32041948	Sarin KY	2020-02-10	Nat Commun	Genome-wide meta-analysis identifies eight new susceptibility loci for cutaneous squamous cell carcinoma.	Cutaneous squamous cell carcinoma	19,149 European ancestry cases, 680,049 European ancestry controls	NA	6p25.3	NR	rs6935510-?	0.386	3E-43				NR [13607369] (imputed)	N
587	chr6	392363	392364	rs147430042	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Non-melanoma skin cancer	5,912 European ancestry cases, 181,740 European ancestry controls		6p25.3	IRF4	rs147430042-A	NR	8E-13		1.724138	[1.47-2]	Affymetrix [5734850] (imputed)	N
587	chr6	392690	392691	rs11308001	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Skin cancer	25,928 European ancestry cases, 466,275 European ancestry controls, 154 East Asian ancestry cases, 178,572 East Asian ancestry controls	NA	6p25.3		rs11308001-C	NR	6E-38		0.1335	[0.11-0.15] unit decrease	Affymetrix, Illumina [25845421] (imputed)	N
588	chr6	396320	396321	rs12203592	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	6p25.3		rs12203592-T	0.20023	4E-14		0.064238	[0.048-0.081] unit decrease	Affymetrix [15580782] (imputed)	N
588	chr6	396320	396321	rs12203592	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	6p25.3		rs12203592-T	0.20023	3E-8		0.047862	[0.031-0.065] unit decrease	Affymetrix [15580782] (imputed)	N
588	chr6	396320	396321	rs12203592	34737440	Lona-Durazo F	2021-11-04	Commun Biol	A large Canadian cohort provides insights into the genetic architecture of human hair colour.	Brown vs. black hair color	10,990 European ancestry individuals	NA	6p25.3		rs12203592-C	NR	2E-50		1.13807	[0.99-1.29] increase	Affymetrix, Illumina [32876187] (imputed)	N
588	chr6	396320	396321	rs12203592	34737440	Lona-Durazo F	2021-11-04	Commun Biol	A large Canadian cohort provides insights into the genetic architecture of human hair colour.	Blond vs. brown/black hair color	12,398 European ancestry individuals	NA	6p25.3		rs12203592-C	NR	2E-52		0.896658	[0.78-1.01] increase	Affymetrix, Illumina [32876187] (imputed)	N
588	chr6	396320	396321	rs12203592	34424336	Mobuchon L	2021-08-23	J Natl Cancer Inst	Different Pigmentation Risk Loci for High-Risk Monosomy 3 and Low-Risk Disomy 3 Uveal Melanomas.	Uveal melanoma	1,142 European ancestry cases, 882 European ancestry controls	NA	6p25.3		rs12203592-T	NR	4E-8		1.76	[1.44-2.16]	Illumina [7488175] (imputed)	N
588	chr6	396320	396321	rs12203592	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6p25.3		rs12203592-?	NR	4E-148		1.38859	[1.36-1.41]	NR [685523]	N
588	chr6	396320	396321	rs12203592	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Cancer	56,634 White British ancestry cases, 218,196 White British ancestry controls	NA	6p25.3		rs12203592-?	NR	8E-47		1.12836	[1.11-1.14]	NR [688737]	N
588	chr6	396320	396321	rs12203592	34220922	Wang J	2021-06-17	Front Genet	Genome-Wide Association Analyses Identify Variants in <i>IRF4</i> Associated With Acute Myeloid Leukemia and Myelodysplastic Syndrome Susceptibility.	Acute myeloid leukemia or myelodysplastic syndrome (pleiotropy)	1,769 European ancestry acute myeloid leukemia cases, 540 myelodysplastic syndrome cases, 2,814 European ancestry controls	NA	6p25.3		rs12203592-T	0.14	3E-12		1.38	[1.26-1.51]	Illumina [9000000] (imputed)	N
588	chr6	396320	396321	rs12203592	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	6p25.3	IRF4	rs12203592-C	0.780302	4E-8		0.0140214	[0.009-0.019] unit decrease	NR [16516521] (imputed)	N
588	chr6	396320	396321	rs12203592	33893285	Guindo-Martinez M	2021-04-23	Nat Commun	The impact of non-additive genetic associations on age-related complex diseases.	Cancer	17,131 European ancestry cases, 39,506 European ancestry controls	NA	6p25.3		rs12203592-T	0.1772604	1E-49		1.3		Affymetrix [15611556] (imputed)	N
588	chr6	396320	396321	rs12203592	33692100	Simcoe M	2021-03-10	Sci Adv	Genome-wide association study in almost 195,000 individuals identifies 50 previously unidentified genetic loci for eye color.	Eye color	157,485 European ancestry individuals	35,501 European ancestry individuals, 959 Han Chinese ancestry individuals, 677 Indian ancestry individuals	6p25.3		rs12203592-T	0.171	2E-321	(EA)	0.385	[0.37-0.4] unit decrease	Illumina [11532091] (imputed)	N
588	chr6	396320	396321	rs12203592	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p25.3	IRF4	rs12203592-T	0.219941	2E-18		0.022975089	[0.018-0.028] unit increase	Affymetrix [93095623] (imputed)	N
588	chr6	396320	396321	rs12203592	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p25.3	IRF4	rs12203592-T	0.219956	1E-13		0.020848839	[0.015-0.026] unit increase	Affymetrix [93095623] (imputed)	N
588	chr6	396320	396321	rs12203592	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p25.3	NR	rs12203592-T	0.200408	3E-19				Affymetrix, Illumina [24649327] (imputed)	N
588	chr6	396320	396321	rs12203592	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	6p25.3	NR	rs12203592-T	0.210255	2E-21		0.022394	[0.018-0.027] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
588	chr6	396320	396321	rs12203592	32678081	Timmers PRHJ	2020-07-16	Nat Commun	Multivariate genomic scan implicates novel loci and haem metabolism in human ageing.	Aging traits (healthspan, parental lifespan or longevity) (multivariate analysis)	at least 837,415 European ancestry individuals	NA	6p25.3	DUSP22, IRF4	rs12203592-C	0.81	8E-26				NR [7320282]	N
588	chr6	396320	396321	rs12203592	32339537	Roberts V	2020-04-24	J Invest Dermatol	Genome wide association study identifies genetic associations with perceived age.	Youthful appearance (self-reported)	423,992 European ancestry individuals	NA	6p25.3	IRF4	rs12203592-C	0.78211	1E-327		1.2234626	NR	Affymetrix [~ 9600000] (imputed)	N
588	chr6	396320	396321	rs12203592	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (late vs. average onset facial hair)	26,066 European ancestry late onset individuals, 161,175 European ancestry average onset individuals	NA	6p25.3		rs12203592-C	NR	5E-29		0.0152773	[0.013-0.018] years increase	NR [7400000] (imputed)	N
588	chr6	396320	396321	rs12203592	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (early vs. average onset facial hair)	13,226 European ancestry early onset individuals, 161,175 European ancestry average onset individuals	NA	6p25.3		rs12203592-C	NR	7E-10		0.00663402	[0.0045-0.0088] years decrease	NR [7400000] (imputed)	N
588	chr6	396320	396321	rs12203592	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (age at voice breaking MTAG)	205,354 European ancestry individuals	NA	6p25.3		rs12203592-C	NR	1E-15		0.034645826	[0.026-0.043] years increase	NR [7400000] (imputed)	N
588	chr6	396320	396321	rs12203592	32041948	Sarin KY	2020-02-10	Nat Commun	Genome-wide meta-analysis identifies eight new susceptibility loci for cutaneous squamous cell carcinoma.	Cutaneous squamous cell carcinoma	19,149 European ancestry cases, 680,049 European ancestry controls	NA	6p25.3	IRF4	rs12203592-T	0.166	1E-221		0.44	[0.42-0.46] unit increase	NR [13607369] (imputed)	N
588	chr6	396320	396321	rs12203592	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Squamous cell carcinoma	9,674 European ancestry cases, 625,657 European ancestry controls	NA	6p25.3	IRF4	rs12203592-T	0.130659	1E-169		1.62	[1.59-1.66]	Affymetrix, Illumina [up to 9061544] (imputed)	N
588	chr6	396320	396321	rs12203592	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Keratinocyte cancer (MTAG)	at least 18,538 European ancestry cases, at least 340,302 European ancestry controls	NA	6p25.3	IRF4	rs12203592-T	0.222781	2E-302		1.45	[1.42-1.47]	Affymetrix [7600000] (imputed)	N
588	chr6	396320	396321	rs12203592	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Basal cell carcinoma	31,787 European ancestry cases, 619,351 European ancestry controls	NA	6p25.3	IRF4	rs12203592-T	0.130659	6E-270		1.41	[1.39-1.43]	Affymetrix, Illumina [up to 9061544] (imputed)	N
588	chr6	396320	396321	rs12203592	30664655	Adhikari K	2019-01-21	Nat Commun	A GWAS in Latin Americans highlights the convergent evolution of lighter skin pigmentation in Eurasia.	Skin, hair and eye pigmentation (multivariate analysis)	6,236 Latin American individuals	NA	6p25.3	IRF4	rs12203592-?	NR	4E-43				Illumina [181139] (imputed)	N
588	chr6	396320	396321	rs12203592	30664655	Adhikari K	2019-01-21	Nat Commun	A GWAS in Latin Americans highlights the convergent evolution of lighter skin pigmentation in Eurasia.	Skin pigmentation	6,236 Latin American individuals	NA	6p25.3	IRF4	rs12203592-?	NR	3E-10				Illumina [8896142] (imputed)	N
588	chr6	396320	396321	rs12203592	30664655	Adhikari K	2019-01-21	Nat Commun	A GWAS in Latin Americans highlights the convergent evolution of lighter skin pigmentation in Eurasia.	Hair color	6,236 Latin American individuals	NA	6p25.3	IRF4	rs12203592-?	NR	2E-13				Illumina [8896142] (imputed)	N
588	chr6	396320	396321	rs12203592	30664655	Adhikari K	2019-01-21	Nat Commun	A GWAS in Latin Americans highlights the convergent evolution of lighter skin pigmentation in Eurasia.	Eye color (brightness)	6,236 Latin American individuals	NA	6p25.3	IRF4	rs12203592-?	NR	3E-14				Illumina [8896142] (imputed)	N
588	chr6	396320	396321	rs12203592	30664655	Adhikari K	2019-01-21	Nat Commun	A GWAS in Latin Americans highlights the convergent evolution of lighter skin pigmentation in Eurasia.	Eye color	6,236 Latin American individuals	NA	6p25.3	IRF4	rs12203592-?	NR	1E-12				Illumina [8896142] (imputed)	N
588	chr6	396320	396321	rs12203592	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking cessation (MTAG)	up to 820,192 European ancestry individuals	NA	6p25.3	NR	rs12203592-T	0.176	9E-9		0.0116721	[0.0077-0.0157] unit decrease	NR [9732723] (imputed)	N
588	chr6	396320	396321	rs12203592	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking cessation	up to 547,219 European ancestry individuals	NA	6p25.3	NR	rs12203592-T	0.176	1E-8		0.02920926	[0.019-0.039] unit decrease	NR [~ 10000000] (imputed)	N
588	chr6	396320	396321	rs12203592	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	6p25.3		rs12203592-?	NR	4E-19				NR [~ 8900000] (imputed)	N
588	chr6	396320	396321	rs12203592	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Sunburns	approximately 344,000 European ancestry individuals	NA	6p25.3		rs12203592-?	NR	1E-300				NR [~ 8900000] (imputed)	N
588	chr6	396320	396321	rs12203592	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	6p25.3		rs12203592-?	NR	7E-105				NR [~ 8900000] (imputed)	N
588	chr6	396320	396321	rs12203592	30429480	Duffy DL	2018-11-14	Nat Commun	Novel pleiotropic risk loci for melanoma and nevus density implicate multiple biological pathways.	Nevus count	52,506 European ancestry individuals	NA	6p25.3	IRF4	rs12203592-?	NR	4E-67	(Han & Eskin random effects)			Affymetrix, Illumina [up to 31337615] (imputed)	N
588	chr6	396320	396321	rs12203592	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Skin pigmentation traits	4,988 Spanish ancestry individuals	NA	6p25.3	IRF4	rs12203592-?		7E-11	(Skin sensitivity to sun)	0.2438	[0.17-0.32] unit decrease	Illumina [9499600] (imputed)	N
588	chr6	396320	396321	rs12203592	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Skin pigmentation traits	4,988 Spanish ancestry individuals	NA	6p25.3	IRF4	rs12203592-?		4E-13	(Skin color phototype score)	0.8223	[0.6-1.04] unit decrease	Illumina [9499600] (imputed)	N
588	chr6	396320	396321	rs12203592	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Skin pigmentation traits	4,988 Spanish ancestry individuals	NA	6p25.3	IRF4	rs12203592-?		4E-10	(Skin sensitivity to sun phototype score)	0.7418	[0.51-0.97] unit decrease	Illumina [9499600] (imputed)	N
588	chr6	396320	396321	rs12203592	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Skin pigmentation traits	4,988 Spanish ancestry individuals	NA	6p25.3	IRF4	rs12203592-?		2E-9	(Skin sensitivity to sun (high-medium to low-medium))	0.39813748	[0.27-0.53] unit increase	Illumina [9499600] (imputed)	N
588	chr6	396320	396321	rs12203592	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Skin pigmentation traits	4,988 Spanish ancestry individuals	NA	6p25.3	IRF4	rs12203592-?		2E-51	(Freckling phototype score)	0.9847	[0.86-1.11] unit decrease	Illumina [9499600] (imputed)	N
588	chr6	396320	396321	rs12203592	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Skin pigmentation traits	4,988 Spanish ancestry individuals	NA	6p25.3	IRF4	rs12203592-?		2E-41	(Freckling (categorical))	0.4661	[0.4-0.53] unit decrease	Illumina [9499600] (imputed)	N
588	chr6	396320	396321	rs12203592	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Skin pigmentation traits	4,988 Spanish ancestry individuals	NA	6p25.3	IRF4	rs12203592-?		2E-14	(Skin color)	0.1762	[0.13-0.22] unit increase	Illumina [9499600] (imputed)	N
588	chr6	396320	396321	rs12203592	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Skin pigmentation traits	4,988 Spanish ancestry individuals	NA	6p25.3	IRF4	rs12203592-?		1E-10	(Freckling (binary - has freckles))	0.73500735	[0.51-0.96] unit increase	Illumina [9499600] (imputed)	N
588	chr6	396320	396321	rs12203592	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Hair morphology traits	4,988 Spanish ancestry individuals	NA	6p25.3	IRF4	rs12203592-?		8E-48	(Hair color (black))	1.0489297	[0.91-1.19] unit increase	Illumina [9499600] (imputed)	N
588	chr6	396320	396321	rs12203592	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Hair morphology traits	4,988 Spanish ancestry individuals	NA	6p25.3	IRF4	rs12203592-?		5E-45	(Hair color)	0.3258	[0.28-0.37] unit decrease	Illumina [9499600] (imputed)	N
588	chr6	396320	396321	rs12203592	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Hair morphology traits	4,988 Spanish ancestry individuals	NA	6p25.3	IRF4	rs12203592-?		3E-57	(Hair color phototype score)	1.915	[1.68-2.15] unit increase	Illumina [9499600] (imputed)	N
588	chr6	396320	396321	rs12203592	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Hair morphology traits	4,988 Spanish ancestry individuals	NA	6p25.3	IRF4	rs12203592-?		1E-27	(Hair color (brown))	0.71931726	[0.59-0.85] unit decrease	Illumina [9499600] (imputed)	N
588	chr6	396320	396321	rs12203592	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Eye color traits	4,988 Spanish ancestry individuals	NA	6p25.3	IRF4	rs12203592-?		7E-10	(Eye color phototype score)	0.6112	[0.42-0.81] unit decrease	Illumina [9499600] (imputed)	N
588	chr6	396320	396321	rs12203592	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Eye color traits	4,988 Spanish ancestry individuals	NA	6p25.3	IRF4	rs12203592-?		5E-13	(Eye color (dark))	0.46824425	[0.34-0.59] unit decrease	Illumina [9499600] (imputed)	N
588	chr6	396320	396321	rs12203592	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Eye color traits	4,988 Spanish ancestry individuals	NA	6p25.3	IRF4	rs12203592-?		2E-11	(Eye color)	0.2115	[0.15-0.27] unit increase	Illumina [9499600] (imputed)	N
588	chr6	396320	396321	rs12203592	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	6p25.3	IRF4	rs12203592-T	NR	2E-17		0.221037	[0.17-0.27] unit increase	Illumina [at least 950000] (imputed)	N
588	chr6	396320	396321	rs12203592	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Low tan response	46,768 European ancestry low tanning cases, 74,528 European ancestry moderate and high tanning controls	15,547 European ancestry low tanning  cases, 39,835 European moderate and high tanning ancestry controls	6p25.3	IRF4	rs12203592-T	NR	1E-581		0.545	[0.4-0.69] unit increase	Affymetrix [8351141] (imputed)	N
588	chr6	396320	396321	rs12203592	29662168	Hysi PG	2018-04-16	Nat Genet	Genome-wide association meta-analysis of individuals of European ancestry identifies new loci explaining a substantial fraction of hair color variation and heritability.	Hair color	290,891 European ancestry individuals	27,865 European ancestry individuals	6p25.3	IRF4	rs12203592-T	0.212	1E-100		0.375	[0.37-0.38] unit increase	Affymetrix, Illumina [at least 560000] (imputed)	N
588	chr6	396320	396321	rs12203592	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling nervous	373,121 European ancestry individuals	NA	6p25.3	IRF4	rs12203592-T	0.209969	2E-8		5.58	z score increase	NR [10847151] (imputed)	N
588	chr6	396320	396321	rs12203592	29146897	Pirastu N	2017-11-17	Nat Commun	GWAS for male-pattern baldness identifies 71 susceptibility loci explaining 38% of the risk.	Male-pattern baldness	25,662 British ancestry cases, 17,928 British ancestry controls	13,367 European ancestry cases, 11,851 European ancestry controls, 3,436 cases, 2,435 controls	6p25.3	IRF4	rs12203592-C	NR	2E-52		0.262639	[0.23-0.3] unit increase	Affymetrix [27512692] (imputed)	N
588	chr6	396320	396321	rs12203592	28502801	Law MH	2017-05-11	J Invest Dermatol	Genome-Wide Association Shows that Pigmentation Genes Play a Role in Skin Aging.	Skin aging (microtopography measurement)	5,087 individuals	NA	6p25.3	IRF4	rs12203592-G	0.79	9E-13		0.1295	[NR] unit decrease	Illumina [at least 233546] (imputed)	N
588	chr6	396320	396321	rs12203592	28272467	Heilmann-Heimbach S	2017-03-08	Nat Commun	Meta-analysis identifies novel risk loci and yields systematic insights into the biology of male-pattern baldness.	Male-pattern baldness	10,846 European ancestry cases, 11,672 European ancestry controls	NA	6p25.3		rs12203592-T	0.17	2E-11		0.2	[0.14-0.26] unit increase	Affymetrix, Illumina [8004650] (imputed)	N
588	chr6	396320	396321	rs12203592	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		6p25.3	IRF4	rs12203592-T	NR	3E-49		0.109244	NR unit increase	NR [NR] (imputed)	N
588	chr6	396320	396321	rs12203592	27723757	Jin Y	2016-11-01	Nat Genet	Genome-wide association studies of autoimmune vitiligo identify 23 new risk loci and highlight key pathways and regulatory variants.	Vitiligo	2,853 European ancestry cases and 37,405 European ancestry controls	1,827 European ancestry cases and 2,181 European ancestry controls	6p25.3	IRF4	rs12203592-C	0.8632	3E-10		1.2629452	[1.25-1.43]	Illumina [8966411] (imputed)	N
588	chr6	396320	396321	rs12203592	27539887	Chahal HS	2016-08-19	Nat Commun	Genome-wide association study identifies 14 novel risk alleles associated with basal cell carcinoma.	Basal cell carcinoma	12.945 European ancestry cases, 274,252 European ancestry controls	4,242 European ancestry cases, 12,802 European ancestry controls	6p25.3	IRF4	rs12203592-T	0.17	2E-152		1.48	[NR]	Illumina [at least 560000] (imputed)	N
588	chr6	396320	396321	rs12203592	27424798	Chahal HS	2016-07-18	Nat Commun	Genome-wide association study identifies novel susceptibility loci for cutaneous squamous cell carcinoma.	Cutaneous squamous cell carcinoma	6,579 European ancestry cases, 280,558 European ancestry controls	825 European ancestry cases, 11,518 European ancestry controls	6p25.3	IRF4	rs12203592-T	0.17	3E-111		1.62		Affymetrix, Illumina [at least 560000] (imputed)	N
588	chr6	396320	396321	rs12203592	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Monobrow	69,284 European ancestry individuals	NA	6p25.3	IRF4	rs12203592-?	NR	1E-10		0.031	[0.022-0.041] unit increase	Illumina [12039491] (imputed)	N
588	chr6	396320	396321	rs12203592	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Male-pattern baldness	9,009 European ancestry cases, 8,491 European ancestry controls	NA	6p25.3	IRF4	rs12203592-?	NR	4E-11		1.22	[1.150-1.294]	Illumina [13436641] (imputed)	N
588	chr6	396320	396321	rs12203592	26926045	Adhikari K	2016-03-01	Nat Commun	A genome-wide association scan in admixed Latin Americans identifies loci influencing facial and scalp hair features.	Hair greying	6,357 Latin American individuals	NA	6p25.3	IRF4	rs12203592-?	NR	3E-13				Illumina [9143600] (imputed)	N
588	chr6	396320	396321	rs12203592	26926045	Adhikari K	2016-03-01	Nat Commun	A genome-wide association scan in admixed Latin Americans identifies loci influencing facial and scalp hair features.	Hair color	6,357 Latin American individuals	NA	6p25.3	IRF4	rs12203592-?	NR	1E-13				Illumina [9143600] (imputed)	N
588	chr6	396320	396321	rs12203592	26829030	Asgari MM	2016-01-29	J Invest Dermatol	Identification of Susceptibility Loci for Cutaneous Squamous Cell Carcinoma.	Squamous cell carcinoma	6,891 European ancestry cases, 54,566 European ancestry controls	810 European ancestry cases,  5,600 European ancestry controls	6p25.3	IRF4	rs12203592-T	0.17	8E-97		1.56	[1.49-1.62]	Affymetrix [9610468] (imputed)	N
588	chr6	396320	396321	rs12203592	25963972	Liu F	2015-05-12	Hum Genet	Genetics of skin color variation in Europeans: genome-wide association studies with functional follow-up.	Skin colour saturation	5,857 European ancestry individuals	NA	6p25.3	IRF4	rs12203592-T	0.0919412668601673	3E-9		0.010126092	[NR] unit decrease	Illumina [11155022] (imputed)	N
588	chr6	396320	396321	rs12203592	25705849	Jacobs LC	2015-02-23	J Invest Dermatol	A Genome-Wide Association Study Identifies the Skin Color Genes IRF4, MC1R, ASIP, and BNC2 Influencing Facial Pigmented Spots.	Facial pigmentation	2,844 European ancestry individuals	NA	6p25.3	IRF4	rs12203592-T	0.09	2E-27		24.95	[24.93-24.97] unit increase	Illumina [6846125] (imputed)	N
588	chr6	396320	396321	rs12203592	23548203	Zhang M	2013-04-01	Hum Mol Genet	Genome-wide association studies identify several new loci associated with pigmentation traits and skin cancer risk in European Americans.	Tanning	9,678 European ancestry individuals		6p25.3	IRF4	rs12203592-C	NR	3E-23		0.35	[0.29-0.41] unit decrease	Affymetrix, Illumina [7588169] (imputed)	N
588	chr6	396320	396321	rs12203592	23548203	Zhang M	2013-04-01	Hum Mol Genet	Genome-wide association studies identify several new loci associated with pigmentation traits and skin cancer risk in European Americans.	Sunburns	9,283 European ancestry individuals	4,236 European ancestry individuals	6p25.3	IRF4	rs12203592-T	NR	2E-6		1.13	[0.66-1.60] unit increase	Affymetrix, Illumina [7588169] (imputed)	N
588	chr6	396320	396321	rs12203592	23548203	Zhang M	2013-04-01	Hum Mol Genet	Genome-wide association studies identify several new loci associated with pigmentation traits and skin cancer risk in European Americans.	Non-melanoma skin cancer	6,747 European ancestry individuals	2,078 European ancestry individuals	6p25.3	IRF4	rs12203592-T	NR	7E-14		0.21	[0.15-0.27] unit increase	Affymetrix, Illumina [7588169] (imputed)	N
588	chr6	396320	396321	rs12203592	23548203	Zhang M	2013-04-01	Hum Mol Genet	Genome-wide association studies identify several new loci associated with pigmentation traits and skin cancer risk in European Americans.	Hair color	7,070 European ancestry individuals	4,155 European ancestry individuals	6p25.3	IRF4	rs12203592-C	NR	1E-28		0.35	[0.29-0.41] unit increase	Affymetrix, Illumina [7588169] (imputed)	N
588	chr6	396320	396321	rs12203592	21685912	Hoglinger GU	2011-06-19	Nat Genet	Identification of common variants influencing risk of the tauopathy progressive supranuclear palsy.	Progressive supranuclear palsy	1,069 European ancestry cases, 2,958 European ancestry controls, 45 cases, 329 controls	1,051 European ancestry cases, 3,560 European ancestry controls	6p25.3	IRF4	rs12203592-?	0.19	6E-15		1.48	[1.34-1.63]	Illumina [531451]	N
588	chr6	396320	396321	rs12203592	20585627	Eriksson N	2010-06-24	PLoS Genet	Web-based, participant-driven studies yield novel genetic associations for common traits.	Hair color	9,126 European ancestry individuals	NA	6p25.3	NR	rs12203592-?	NR	4E-7	(red hair)			Illumina [535076]	N
588	chr6	396320	396321	rs12203592	20585627	Eriksson N	2010-06-24	PLoS Genet	Web-based, participant-driven studies yield novel genetic associations for common traits.	Hair color	9,126 European ancestry individuals	NA	6p25.3	IRF4	rs12203592-T	0.18	2E-28	(hair color)	0.59	[NR] unit increase	Illumina [535076]	N
588	chr6	396320	396321	rs12203592	20585627	Eriksson N	2010-06-24	PLoS Genet	Web-based, participant-driven studies yield novel genetic associations for common traits.	Freckling	9,126 European ancestry individuals	NA	6p25.3	IRF4	rs12203592-T	0.18	2E-91		1.61	[NR] unit increase	Illumina [535076]	N
588	chr6	396320	396321	rs12203592	20585627	Eriksson N	2010-06-24	PLoS Genet	Web-based, participant-driven studies yield novel genetic associations for common traits.	Eye color	9,126 European ancestry individuals	NA	6p25.3	IRF4	rs12203592-T	0.18	2E-15	(eye color)	0.42	[NR] unit decrease	Illumina [535076]	N
588	chr6	396320	396321	rs12203592	18483556	Han J	2008-05-16	PLoS Genet	A genome-wide association study identifies novel alleles associated with hair color and skin pigmentation.	Black vs. red hair color	2,287 European ancestry female individuals	8,465 European ancestry individuals	6p25.3	IRF4	rs12203592-T	NR	9E-28		0.31	[0.25-0.36] hair color score decrease	Illumina [528173]	N
588	chr6	396320	396321	rs12203592	18483556	Han J	2008-05-16	PLoS Genet	A genome-wide association study identifies novel alleles associated with hair color and skin pigmentation.	Black vs. blond hair color	2,287 European ancestry female individuals	8,465 European ancestry individuals	6p25.3	IRF4	rs12203592-T	NR	7E-127		0.35	[0.33-0.37] hair color score decrease	Illumina [528173]	N
588	chr6	402904	402905	rs142388808	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Dark brown (UKB data field 1747_4)	171,614 European ancestry cases, 283,550 European ancestry controls	NA	6p25.3		rs142388808-A	0.008053	7E-48		0.34	[0.29-0.39] unit increase	NR [11842647] (imputed)	N
588	chr6	402904	402905	rs142388808	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Blonde (UKB data field 1747_1)	51,424 European ancestry cases, 403,740 European ancestry controls	NA	6p25.3		rs142388808-A	0.009851	1E-56		0.61	[0.54-0.68] unit decrease	NR [11842647] (imputed)	N
588	chr6	403603	403604	rs1877179	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	6p25.3	NR	rs1877179-A	NR	2E-16		0.0366	[0.028-0.045] unit increase	Affymetrix [9000000] (imputed)	N
588	chr6	403603	403604	rs1877179	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	6p25.3	NR	rs1877179-A	NR	2E-28		0.0493	[0.04-0.058] unit increase	Affymetrix [9000000] (imputed)	N
588	chr6	403798	403799	rs3778607	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	6p25.3		rs3778607-G	NR	5E-14		0.0154	[0.011-0.019] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
588	chr6	403798	403799	rs3778607	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p25.3		rs3778607-A	0.453	3E-20				Affymetrix [10369434] (imputed)	N
588	chr6	403798	403799	rs3778607	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	6p25.3	IRF4	rs3778607-G	0.547061	1E-10		0.014229573	[0.0099-0.0186] unit decrease	Affymetrix [93095623] (imputed)	N
588	chr6	403798	403799	rs3778607	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	6p25.3	NR	rs3778607-A	0.451855	8E-10		0.0202944	[0.014-0.027] unit decrease	NR [19129689] (imputed)	N
588	chr6	403798	403799	rs3778607	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Brown vs. black hair color	269,394 British ancestry brown hair individuals, 14,526 British ancestry black hair individuals	NA	6p25.3	IRF4	rs3778607-A	0.4552	2E-11		1.14	NR	Affymetrix [9154080] (imputed)	N
588	chr6	403798	403799	rs3778607	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	6p25.3	IRF4	rs3778607-A	0.4555	2E-12		1.08	NR	Affymetrix [9154080] (imputed)	N
588	chr6	406552	406552	rs56116020	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	6p25.3	IRF4	rs56116020-CA	0.535007	8E-10		0.014187923	[0.0097-0.0187] unit decrease	Affymetrix [93095623] (imputed)	N
588	chr6	406552	406552	rs56116020	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	6p25.3	IRF4	rs56116020-CA	0.534988	2E-10		0.014776188	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
588	chr6	406559	406559	rs397750039	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	6p25.3		rs397750039-CA	NR	2E-11		0.0175	[0.012-0.023] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
588	chr6	406559	406559	rs397750039	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	6p25.3	IRF4	rs397750039-CA	0.5347	6E-14		0.02816694	[0.021-0.036] unit increase	Affymetrix [~ 2500000] (imputed)	N
588	chr6	408078	408079	rs1050976	32581359	Saevarsdottir S	2020-06-24	Nature	FLT3 stop mutation increases FLT3 ligand level and risk of autoimmune thyroid disease.	Autoimmune thyroid disease	30,234 European ancestry cases, 724,172 European ancestry controls	NA	6p25.3	IRF4	rs1050976-T	0.516	3E-14		1.07	[NR]	Affymetrix, Illumina [42900000] (imputed)	N
588	chr6	408078	408079	rs1050976	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	6p25.3		rs1050976-?	NR	5E-13				NR [~ 8900000] (imputed)	N
588	chr6	408078	408079	rs1050976	30213928	Went M	2018-09-13	Nat Commun	Identification of multiple risk loci and regulatory mechanisms influencing susceptibility to multiple myeloma.	Multiple myeloma	8,197 European ancestry cases, 241,468 European ancestry controls	1,777 European ancestry cases, 6,088 European ancestry controls	6p25.3	NR	rs1050976-T	0.51	6E-8		1.1		Illumina [up to 10291845] (imputed)	N
588	chr6	408078	408079	rs1050976	22057235	Trynka G	2011-11-06	Nat Genet	Dense genotyping identifies and localizes multiple common and rare variant association signals in celiac disease.	Celiac disease	11,812 European ancestry cases, 229 Indian ancestry cases, 11,837 European ancestry controls, 391 Indian ancestry controls	NA	6p25.3	IRF4	rs1050976-?	0.512	2E-9		1.1235955		Illumina [139553]	N
588	chr6	408832	408833	rs12211228	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Brown vs. black hair color	269,394 British ancestry brown hair individuals, 14,526 British ancestry black hair individuals	NA	6p25.3	IRF4	rs12211228-?	NR	2E-11		1.1566043	NR	Affymetrix [9154080] (imputed)	N
588	chr6	409118	409119	rs9391997	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	6p25.3		rs9391997-G	NR	1E-14		0.0672	[0.05-0.084] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
588	chr6	409118	409119	rs9391997	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (childhood onset)	9,433 British ancestry cases, 318,237 British ancestry controls	NA	6p25.3	IRF4, DUSP22, EXOC2	rs9391997-G	0.527	7E-11		1.102	[1.070-1.135]	Affymetrix [10894596] (imputed)	N
588	chr6	409118	409119	rs9391997	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	6p25.3	IRF4	rs9391997-A	0.470259	7E-16		0.07386949	[0.056-0.092] unit decrease	Affymetrix [7288503] (imputed)	N
588	chr6	409118	409119	rs9391997	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma onset (childhood vs adult)	13,962 European ancestry childhood onset cases, 14,873 European ancestry adult onset cases	31,002 European ancestry childhood onset cases, 16,297 European ancestry adult onset cases	6p25.3	IRF4	rs9391997-G	0.529	2E-7		1.053	[1.03-1.07]	Affymetrix [9000000] (imputed)	N
588	chr6	409118	409119	rs9391997	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	6p25.3	IRF4	rs9391997-?	NR	4E-12		1.052	[1.04-1.07]	Affymetrix [9000000] (imputed)	N
588	chr6	409118	409119	rs9391997	26956414	Berndt SI	2016-03-09	Nat Commun	Meta-analysis of genome-wide association studies discovers multiple loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	3,100 European ancestry cases, 7,667 European ancestry controls	1,958 cases,  5,530 controls	6p25.3	IRF4	rs9391997-G	0.494	9E-22		1.35	[1.27-1.43]	Affymetrix, Illumina [~ 8500000] (imputed)	N
588	chr6	410416	410417	rs1050979	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Nasal polyps	5,093 European ancestry cases, 444,966 European ancestry controls, 160 East Asian ancestry cases, 151,846 East Asian ancestry controls	NA	6p25.3		rs1050979-G	NR	5E-12		0.1389	[0.1-0.178] unit increase	Affymetrix, Illumina [25837843] (imputed)	N
588	chr6	410416	410417	rs1050979	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	6p25.3		rs1050979-G	NR	2E-25		0.0221	[0.018-0.026] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
588	chr6	410416	410417	rs1050979	34012112	Chiou J	2021-05-19	Nature	Interpreting type 1 diabetes risk with genetics and single-cell epigenomics.	Type 1 diabetes	18,942 European ancestry cases, 501,638 European ancestry controls	NA	6p25.3	IRF4	rs1050979-G	0.515138	6E-14		0.106195554	[0.079-0.134] unit increase	Affymetrix, Illumina [62116689] (imputed)	N
588	chr6	410416	410417	rs1050979	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p25.3	NR	rs1050979-G	0.486445	7E-37				Affymetrix, Illumina [23472807] (imputed)	N
588	chr6	410416	410417	rs1050979	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	6p25.3	NR	rs1050979-G	0.525212	4E-38		0.024519	[0.021-0.028] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
588	chr6	410847	410848	rs2316515	33204752	Butler-Laporte G	2020-09-24	Open Forum Infect Dis	Genetic Determinants of Antibody-Mediated Immune Responses to Infectious Diseases Agents: A Genome-Wide and HLA Association Study.	Epstein-Barr virus EA-D antibody levels	7,763 White British ancestry individuals	NA	6p25.3	IRF4	rs2316515-A	0.388	4E-8		0.09	[0.059-0.121] unit increase	NR [25472218] (imputed)	N
588	chr6	410847	410848	rs2316515	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Lymphocytic leukemia	852 European ancestry cases, 410,350 European ancestry controls	NA	6p25.3		rs2316515-G	NR	1E-8		1.3469827	NR	Affymetrix [7846216] (imputed)	N
588	chr6	410847	410848	rs2316515	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung adenocarcinoma	11,273 European ancestry cases,  55,483 European ancestry controls	NA	6p25.3	IRF4	rs2316515-G	0.589206075	1E-7		1.0899395	[1.06-1.13]	Illumina [10439017] (imputed)	N
588	chr6	411063	411064	rs872071	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Chronic lymphocytic leukemia	764 White British ancestry cases, 272,079 White British ancestry controls	NA	6p25.3		rs872071-?	NR	1E-7		0.756174	[0.65-0.86]	NR [663083]	N
588	chr6	411063	411064	rs872071	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p25.3	IRF4	rs872071-G	0.528253	9E-17		0.019604748	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
588	chr6	411063	411064	rs872071	24292274	Speedy HE	2013-12-01	Nat Genet	A genome-wide association study identifies multiple susceptibility loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	1,739 European ancestry cases, 5,199 European ancestry controls	1,144 European ancestry cases, 3,151 European ancestry controls	6p25.3	IRF4	rs872071-G	0.51	3E-16		1.39	[NR]	Illumina [450000] (imputed)	N
588	chr6	411063	411064	rs872071	23770605	Berndt SI	2013-06-16	Nat Genet	Genome-wide association study identifies multiple risk loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	2,179 European ancestry cases, 6,221 European ancestry controls	1,709 European ancestry cases, 6,318 European ancestry controls	6p25.3	IRF4	rs872071-G	0.51	6E-20		1.33	[NR]	Illumina [549934]	N
588	chr6	411063	411064	rs872071	22700719	Slager SL	2012-06-13	Blood	Common variation at 6p21.31 (BAK1) influences the risk of chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	1,121 European ancestry cases, 3,745 European ancestry controls	861 European ancestry cases, 2,033 European ancestry controls	6p25.3	NR	rs872071-G	0.53	8E-14		1.47	[1.33-1.63]	Affymetrix, Illumina [~ 1500000] (imputed)	N
588	chr6	411063	411064	rs872071	18758461	Di Bernardo MC	2008-08-31	Nat Genet	A genome-wide association study identifies six susceptibility loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	505 European ancestry cases, 1,438 European ancestry controls	1,024 European ancestry cases, 1,677 European ancestry controls	6p25.3	IRF4	rs872071-G	0.54	2E-20		1.54	[1.41- 1.69]	Illumina [345665]	N
588	chr6	411553	411554	rs6906608	25608926	Betz RC	2015-01-22	Nat Commun	Genome-wide meta-analysis in alopecia areata resolves HLA associations and reveals two new susceptibility loci.	Alopecia areata	2,332 European ancestry cases and 5,233 European ancestry controls	764 European ancestry cases and 2,256 European ancestry controls	6p25.3	DUSP22, IRF4, EXOC2, LOC401242, TRIM27, ZNF311, OR2B3, OR2J3, OR2J2	rs6906608-C	NR	9E-7		1.290206		Illumina [1233578] (imputed)	N
588	chr6	412801	412802	rs9392504	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Autoimmune traits	approximately 459,000 European ancestry individuals	NA	6p25.3		rs9392504-?	NR	1E-10				NR [~ 8900000] (imputed)	N
588	chr6	412801	412802	rs9392504	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	6p25.3	IRF4	rs9392504-?	NR	1E-18		1.172883	NR	Affymetrix [9154080] (imputed)	N
588	chr6	412801	412802	rs9392504	28165464	Law PJ	2017-02-06	Nat Commun	Genome-wide association analysis implicates dysregulation of immunity genes in chronic lymphocytic leukaemia.	Chronic lymphocytic leukemia	4,478 European ancestry cases and 13,213 European ancestry controls.	1,722 European ancestry cases and 4,385 European ancestry controls.	6p25.3	IRF4	rs9392504-A	NR	1E-28		1.33	[1.26-1.4]	Affymetrix, Illumina [> 10000000] (imputed)	N
588	chr6	413388	413389	rs10900944	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	6p25.3	NR	rs10900944-A	0.0147699	8E-13		0.0917513	[0.067-0.117] unit increase	NR [19129689] (imputed)	N
588	chr6	417726	417727	rs9378805	21131588	Slager SL	2010-12-03	Blood	Genome-wide association study identifies a novel susceptibility locus at 6p21.3 among familial CLL.	Chronic lymphocytic leukemia	407 European ancestry cases, 296 European ancestry controls	252 European ancestry cases, 965 European ancestry controls	6p25.3	NR	rs9378805-C	0.49	2E-6		1.38	[1.20-1.58]	Affymetrix [827777]	N
588	chr6	421195	421196	rs4246064	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Brown vs. black hair color	269,394 British ancestry brown hair individuals, 14,526 British ancestry black hair individuals	NA	6p25.3	IRF4	rs4246064-?	NR	9E-21		1.175779	NR	Affymetrix [9154080] (imputed)	N
588	chr6	421195	421196	rs4246064	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	6p25.3	IRF4	rs4246064-?	NR	6E-18		1.0847163	NR	Affymetrix [9154080] (imputed)	N
588	chr6	421280	421281	rs62389423	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	6p25.3	NR	rs62389423-A	NR	2E-17		0.0286	[0.022-0.035] unit increase	Affymetrix [9000000] (imputed)	N
588	chr6	421280	421281	rs62389423	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Brown vs. black hair color	269,394 British ancestry brown hair individuals, 14,526 British ancestry black hair individuals	NA	6p25.3	IRF4	rs62389423-?	NR	2E-308		2.2497187	NR	Affymetrix [9154080] (imputed)	N
588	chr6	421280	421281	rs62389423	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	6p25.3	IRF4	rs62389423-?	NR	2E-308		2.5866528	NR	Affymetrix [9154080] (imputed)	N
588	chr6	421280	421281	rs62389423	28212542	Ransohoff KJ	2017-02-09	Oncotarget	Two-stage genome-wide association study identifies a novel susceptibility locus associated with melanoma.	Melanoma	4,842 European ancestry cases, 286,565 European ancestry controls	1,804 European ancestry cases, 1,026 European ancestry controls	6p25.3	IRF4, EXOC2	rs62389423-A	0.14	9E-14		1.24	[1.17-1.31]	Illumina [at least 560000] (imputed)	N
588	chr6	422630	422631	rs62389424	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in ever smokers	23,223 European ancestry cases,  16,964 European ancestry controls	NA	6p25.3	IRF4, EXOC2	rs62389424-A	0.124808663	3E-6		1.1453886	[1.081637487-1.21289723]	Illumina [10439017] (imputed)	N
588	chr6	422630	422631	rs62389424	26184321	Lin BD	2015-07-13	Genes (Basel)	Heritability and Genome-Wide Association Studies for Hair Color in a Dutch Twin Family Based Sample.	Light vs. dark hair color	3,069 European ancestry light hair individuals, 4,022 European ancestry dark hair individuals	NA	6p25.3	IRF4	rs62389424-?	0.913	3E-12		2.260398	[2.03-2.49]	Affymetrix, Illumina, Perlegen [6473680] (imputed)	N
588	chr6	422630	422631	rs62389424	26184321	Lin BD	2015-07-13	Genes (Basel)	Heritability and Genome-Wide Association Studies for Hair Color in a Dutch Twin Family Based Sample.	Brown vs. non-brown hair color	3,826 European ancestry brown hair individuals, 3,265 European ancestry non-brown hair individuals	NA	6p25.3	IRF4	rs62389424-?	0.913	5E-8		1.8014772	[1.59-2.01]	Affymetrix, Illumina, Perlegen [6473680] (imputed)	N
588	chr6	422630	422631	rs62389424	26184321	Lin BD	2015-07-13	Genes (Basel)	Heritability and Genome-Wide Association Studies for Hair Color in a Dutch Twin Family Based Sample.	Blond vs non-blond hair color	2,888 European ancestry blond hair individuals, 4,203 European ancestry non-blond hair individuals	NA	6p25.3	IRF4	rs62389424-?	0.087	1E-13		2.4846	[2.25-2.72]	Affymetrix, Illumina, Perlegen [6473680] (imputed)	N
588	chr6	424914	424915	rs9405661	34127860	Robertson CC	2021-06-14	Nat Genet	Fine-mapping, trans-ancestral and genomic analyses identify causal variants, cells, genes and drug targets for type 1 diabetes.	Type 1 diabetes	20,065 European ancestry cases, 33,065 European ancestry controls, 1,045 other-admixed ancestry cases, 1,103 other-admixed ancestry controls, 1,043 African ancestry cases, 3,206 African ancestry controls	NA	6p25.3	IRF4	rs9405661-A	0.514	2E-9		1.08		Illumina [715631] (imputed)	N
588	chr6	424914	424915	rs9405661	34127860	Robertson CC	2021-06-14	Nat Genet	Fine-mapping, trans-ancestral and genomic analyses identify causal variants, cells, genes and drug targets for type 1 diabetes.	Type 1 diabetes	20,065 European ancestry cases, 33,065 European ancestry controls, 1,045 other-admixed ancestry cases, 1,103 other-admixed ancestry controls, 1,043 African ancestry cases, 3,206 African ancestry controls	NA	6p25.3	IRF4	rs9405661-A	0.514	2E-9		1.08		Illumina [715631] (imputed)	N
588	chr6	425885	425886	rs148158308	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Dark brown (UKB data field 1747_4)	171,614 European ancestry cases, 283,550 European ancestry controls	NA	6p25.3		rs148158308-A	0.008107	5E-12		0.18	[0.13-0.23] unit decrease	NR [11842647] (imputed)	N
588	chr6	426154	426155	rs9378815	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	6p25.3	IRF4	rs9378815-G	NR	1E-11		0.0968919	[0.067-0.127] unit decrease	Illumina [8380626] (imputed)	N
588	chr6	426154	426155	rs9378815	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	6p25.3	IRF4	rs9378815-G	0.34	2E-7	(EA)	0.08807	[0.055-0.121] unit decrease	Illumina [8380626] (imputed)	N
588	chr6	426154	426155	rs9378815	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	6p25.3	IRF4	rs9378815-C	0.66	1E-7	(EA)	1.09	[1.05-1.12]	Affymetrix, Illumina [up to 9739303] (imputed)	N
588	chr6	426154	426155	rs9378815	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	6p25.3	IRF4	rs9378815-C	0.58	2E-10		1.09	[1.06-1.12]	Affymetrix, Illumina [up to 9739303] (imputed)	N
588	chr6	433065	433066	rs143615986	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Brown vs. black hair color	269,394 British ancestry brown hair individuals, 14,526 British ancestry black hair individuals	NA	6p25.3	IRF4	rs143615986-?	NR	2E-66		1.8079914	NR	Affymetrix [9154080] (imputed)	N
588	chr6	433065	433066	rs143615986	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	6p25.3	IRF4	rs143615986-?	NR	6E-76		1.7639794	NR	Affymetrix [9154080] (imputed)	N
588	chr6	434363	434364	rs9328192	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6p25.3		rs9328192-G	0.511927	2E-9		0.014043241	[0.0095-0.0186] unit increase	Affymetrix [93095623] (imputed)	N
588	chr6	434914	434915	rs4256472	29293537	Gorlova OY	2018-01-02	PLoS One	Gene-level association analysis of systemic sclerosis: A comparison of African-Americans and White populations.	Limited cutaneous systemic scleroderma	1,087 European ancestry cases, 3,466 European ancestry controls, 82 African American cases, 260 African American controls	NA	6p25.3	IRF4	rs4256472-?	NR	6E-6				Illumina [126270]	N
588	chr6	437420	437421	rs6597006	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	6p25.3	NR	rs6597006-G	NR	2E-14		0.0664	[0.049-0.083] unit decrease	Affymetrix [9000000] (imputed)	N
588	chr6	442356	442357	rs9392017	28112199	Law PJ	2017-01-23	Sci Rep	Genome-wide association analysis of chronic lymphocytic leukaemia, Hodgkin lymphoma and multiple myeloma identifies pleiotropic risk loci.	B-cell malignancies (chronic lymphocytic leukemia, Hodgkin lymphoma or multiple myeloma) (pleiotropy)	1,842 European ancestry chronic lymphocytic leukemia cases, 1,465 European ancestry Hodgkin lymphoma cases, 3,790 European ancestry multiple myeloma cases, 7,324 European ancestry controls	NA	6p25.3	IRF4	rs9392017-G	NR	6E-9				Illumina [10806625] (imputed)	N
588	chr6	451283	451284	rs142816268	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Light brown (UKB data field 1747_3)	185,000 European ancestry cases, 270,164 European ancestry controls	NA	6p25.3		rs142816268-A	0.005962	2E-19		0.27	[0.21-0.33] unit decrease	NR [11842647] (imputed)	N
588	chr6	451283	451284	rs142816268	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Black (UKB data field 1747_5)	20,700 European ancestry cases, 434,464 European ancestry controls	NA	6p25.3		rs142816268-A	0.005078	9E-35		0.91	[0.76-1.06] unit increase	NR [11842647] (imputed)	N
588	chr6	453414	453415	rs9392026	33549134	Adolphe C	2021-02-06	Genome Med	Genetic and functional interaction network analysis reveals global enrichment of regulatory T cell genes influencing basal cell carcinoma susceptibility.	Basal cell carcinoma	17,416 European ancestry cases, 375,455 European ancestry controls	NA	6p25.3	EXOC2	rs9392026-G	0.408457	1E-23		0.11021634	[0.089-0.132] unit increase	Affymetrix [7260263] (imputed)	N
588	chr6	453414	453415	rs9392026	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	6p25.3	NR	rs9392026-G	0.408729	2E-64		0.0674837	[0.06-0.075] unit increase	NR [19129689] (imputed)	N
588	chr6	453414	453415	rs9392026	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		6p25.3	NR	rs9392026-A	NR	2E-11		0.0422554	NR unit decrease	NR [NR] (imputed)	N
588	chr6	456142	456143	rs2316793	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	6p25.3	NR	rs2316793-C	0.20054	4E-34		0.0612844	[0.051-0.071] unit decrease	NR [19129689] (imputed)	N
588	chr6	457747	457748	rs4959270	29293537	Gorlova OY	2018-01-02	PLoS One	Gene-level association analysis of systemic sclerosis: A comparison of African-Americans and White populations.	Limited cutaneous systemic scleroderma	1,087 European ancestry cases, 3,466 European ancestry controls, 82 African American cases, 260 African American controls	NA	6p25.3	EXOC2, IRF4	rs4959270-?	NR	9E-6	(EA)			Illumina [~ 2500000] (imputed)	N
588	chr6	459935	459936	rs187858794	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Dark brown (UKB data field 1747_4)	171,614 European ancestry cases, 283,550 European ancestry controls	NA	6p25.3		rs187858794-G	0.005228	3E-15		0.23	[0.17-0.29] unit increase	NR [11842647] (imputed)	N
588	chr6	459935	459936	rs187858794	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Blonde (UKB data field 1747_1)	51,424 European ancestry cases, 403,740 European ancestry controls	NA	6p25.3		rs187858794-G	0.006074	3E-26		0.5	[0.41-0.59] unit decrease	NR [11842647] (imputed)	N
588	chr6	459935	459936	rs187858794	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Black (UKB data field 1747_5)	20,700 European ancestry cases, 434,464 European ancestry controls	NA	6p25.3		rs187858794-G	0.005594	1E-12		0.5	[0.36-0.64] unit increase	NR [11842647] (imputed)	N
588	chr6	461905	461906	rs962518	33549134	Adolphe C	2021-02-06	Genome Med	Genetic and functional interaction network analysis reveals global enrichment of regulatory T cell genes influencing basal cell carcinoma susceptibility.	Basal cell carcinoma	17,416 European ancestry cases, 375,455 European ancestry controls	NA	6p25.3	EXOC2	rs962518-G	0.437036	4E-21		0.10548292	[0.084-0.127] unit decrease	Affymetrix [7260263] (imputed)	N
588	chr6	466032	466033	rs1540771	17952075	Sulem P	2007-10-21	Nat Genet	Genetic determinants of hair, eye and skin pigmentation in Europeans.	Freckles	2,986 Icelandic ancestry individuals	3,932 European ancestry individuals		SEC5L1, IRF4	rs1540771-A	0.42	4E-18		1.4	[1.26-1.57]	Illumina [317511]	N
588	chr6	470929	470930	rs9392563	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		6p25.3	NR	rs9392563-T	NR	8E-9		0.0399779	NR unit increase	NR [NR] (imputed)	N
588	chr6	471135	471136	rs12202284	23548203	Zhang M	2013-04-01	Hum Mol Genet	Genome-wide association studies identify several new loci associated with pigmentation traits and skin cancer risk in European Americans.	Non-melanoma skin cancer	6,747 European ancestry individuals	2,078 European ancestry individuals	6p25.3	EXOC2, IRF4	rs12202284-A	NR	5E-8		0.15	[0.091-0.209] unit increase	Affymetrix, Illumina [7588169] (imputed)	N
588	chr6	472010	472011	rs548867474	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Blonde (UKB data field 1747_1)	51,424 European ancestry cases, 403,740 European ancestry controls	NA	6p25.3		rs548867474-A	0.002968	2E-16		0.56	[0.43-0.69] unit decrease	NR [11842647] (imputed)	N
588	chr6	472010	472011	rs548867474	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Black (UKB data field 1747_5)	20,700 European ancestry cases, 434,464 European ancestry controls	NA	6p25.3		rs548867474-A	0.002695	1E-14		0.82	[0.61-1.03] unit increase	NR [11842647] (imputed)	N
588	chr6	475488	475489	rs12210050	27539887	Chahal HS	2016-08-19	Nat Commun	Genome-wide association study identifies 14 novel risk alleles associated with basal cell carcinoma.	Basal cell carcinoma	12.945 European ancestry cases, 274,252 European ancestry controls	4,242 European ancestry cases, 12,802 European ancestry controls	6p25.3	EXOC2	rs12210050-T	0.17	1E-51		1.25	[NR]	Illumina [at least 560000] (imputed)	N
588	chr6	475488	475489	rs12210050	22885689	Levinson DF	2012-09-01	Am J Psychiatry	Genome-wide association study of multiplex schizophrenia pedigrees.	Schizophrenia	1,218 European ancestry cases, 990 European ancestry controls, 139 cases, 114 controls	NA	6p25.3	EXOC2, 9648	rs12210050-?	NR	4E-6	(All)	1.18	[NR]	Illumina [up to 531195]	N
588	chr6	475488	475489	rs12210050	22885689	Levinson DF	2012-09-01	Am J Psychiatry	Genome-wide association study of multiplex schizophrenia pedigrees.	Schizophrenia	1,218 European ancestry cases, 990 European ancestry controls, 139 cases, 114 controls	NA	6p25.3	EXOC2, 9648	rs12210050-?	NR	3E-6	(EA)	1.197	[NR]	Illumina [up to 531195]	N
588	chr6	475488	475489	rs12210050	21700618	Nan H	2011-06-23	Hum Mol Genet	Genome-wide association study identifies novel alleles associated with risk of cutaneous basal cell carcinoma and squamous cell carcinoma.	Basal cell carcinoma	2,045 European ancestry cases, 6,013 European ancestry controls	1,426 cases, 4,845 controls	6p25.3	EXOC2	rs12210050-T	0.17	1E-9		1.24	[1.17-1.31]	Affymetrix, Illumina [2318094] (imputed)	N
588	chr6	475488	475489	rs12210050	19340012	Nan H	2009-04-02	J Invest Dermatol	Genome-wide association study of tanning phenotype in a population of European ancestry.	Tanning	2,287 European ancestry female individuals	870 European ancestry female individuals	6p25.3	EXOC2	rs12210050-T	NR	5E-14		0.22	[0.16-0.28] tanning ability score increase	Illumina [528173]	N
588	chr6	475648	475649	rs73376981	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p25.3	NR	rs73376981-?	NR	3E-6		0.0874	[0.051-0.124] unit decrease	Illumina [at least 560000] (imputed)	N
588	chr6	479632	479633	rs767506179	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Light brown (UKB data field 1747_3)	185,000 European ancestry cases, 270,164 European ancestry controls	NA	6p25.3		rs767506179-A	0.006509	7E-17		0.24	[0.18-0.3] unit decrease	NR [11842647] (imputed)	N
588	chr6	479632	479633	rs767506179	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Black (UKB data field 1747_5)	20,700 European ancestry cases, 434,464 European ancestry controls	NA	6p25.3		rs767506179-A	0.005497	7E-24		0.65	[0.52-0.78] unit increase	NR [11842647] (imputed)	N
588	chr6	479679	479680	rs568757492	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Blonde (UKB data field 1747_1)	51,424 European ancestry cases, 403,740 European ancestry controls	NA	6p25.3		rs568757492-G	0.002162	1E-14		0.63	[0.47-0.79] unit decrease	NR [11842647] (imputed)	N
588	chr6	482331	482332	rs187208209	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Dark brown (UKB data field 1747_4)	171,614 European ancestry cases, 283,550 European ancestry controls	NA	6p25.3		rs187208209-C	0.00545	1E-23		0.28	[0.23-0.33] unit increase	NR [11842647] (imputed)	N
588	chr6	483592	483593	rs76106586	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PCDHA4	5,368 Icelandic ancestry individuals	NA	6p25.3		rs76106586-G	0.02422	8E-13		0.440286	[0.32-0.56] unit increase	Illumina [7506463] (imputed)	N
588	chr6	484452	484453	rs116446171	31102405	Labreche K	2019-05-17	Neuro Oncol	A genome-wide association study identifies susceptibility loci for primary central nervous system lymphoma at 6p25.3 and 3p22.1: a LOC network study.	Primary central nervous system lymphoma	475 European ancestry cases, 1,134 European ancestry controls	NA	6p25.3	EXOC2	rs116446171-G	0.022	2E-13		4.99	[3.26-7.65]	Illumina [> 10000000] (imputed)	N
588	chr6	484452	484453	rs116446171	30305637	McMaster ML	2018-10-10	Nat Commun	Two high-risk susceptibility loci at 6p25.3 and 14q32.13 for Waldenstrom macroglobulinemia.	Waldenstrom macroglobulinemia / lymphoplasmacytic lymphoma	217 European ancestry cases, 3,798 European ancestry controls	313 European ancestry cases, 564 European ancestry controls	6p25.3	EXOC2	rs116446171-G	0.019	1E-54		21.14	[14.4-31.03]	Illumina [6440053] (imputed)	N
588	chr6	484452	484453	rs116446171	25261932	Cerhan JR	2014-09-28	Nat Genet	Genome-wide association study identifies multiple susceptibility loci for diffuse large B cell lymphoma.	Diffuse large B cell lymphoma	3,857 European ancestry cases, 7,666 European ancestry controls	1,359 European ancestry cases, 4,557 European ancestry controls	6p25.3	EXOC2	rs116446171-G	0.019	2E-21		2.2	[1.87-2.59]	Illumina [8363971] (imputed)	N
588	chr6	484476	484476	rs755791334	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Non-Hodgkin's lymphoma	2,400 European ancestry cases, 410,350 European ancestry controls	NA	6p25.3		rs755791334-T	NR	4E-7		1.5288182	NR	Affymetrix [7846216] (imputed)	N
588	chr6	485077	485078	rs974455	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Brown vs. black hair color	269,394 British ancestry brown hair individuals, 14,526 British ancestry black hair individuals	NA	6p25.3	EXOC2	rs974455-G	0.227	8E-22		1.172	NR	Affymetrix [9154080] (imputed)	N
588	chr6	485990	485991	rs115957064	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Malignant lymphoma	3,546 European ancestry cases, 487,257 European ancestry controls, 335 East Asian ancestry cases, 177,342 East Asian ancestry controls	NA	6p25.3		rs115957064-T	NR	8E-9		1.6765	[1.11-2.25] unit increase	Affymetrix, Illumina [25845276] (imputed)	N
588	chr6	487566	487567	rs9392037	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota (bacterial taxa)	858 Metropolitan French ancestry individuals	NA	6p25.3	NR	rs9392037-?	NR	4E-8	(Ruminococcus_gnavus)	1.93839	[1.7-2.17]	Illumina [5293637] (imputed)	N
588	chr6	488127	488128	rs553400120	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Blonde (UKB data field 1747_1)	51,424 European ancestry cases, 403,740 European ancestry controls	NA	6p25.3		rs553400120-A	0.003915	2E-9		0.34	[0.23-0.45] unit decrease	NR [11842647] (imputed)	N
588	chr6	488127	488128	rs553400120	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Black (UKB data field 1747_5)	20,700 European ancestry cases, 434,464 European ancestry controls	NA	6p25.3		rs553400120-A	0.003663	5E-10		0.54	[0.37-0.71] unit increase	NR [11842647] (imputed)	N
588	chr6	493975	493976	rs950039	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	6p25.3		rs950039-?	NR	3E-312				NR [~ 8900000] (imputed)	N
588	chr6	495635	495636	rs6597061	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Sunburns	approximately 344,000 European ancestry individuals	NA	6p25.3		rs6597061-?	NR	1E-11				NR [~ 8900000] (imputed)	N
588	chr6	500955	500956	rs1473909	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6p25.3		rs1473909-?	NR	2E-11		0.928029	[0.91-0.95]	NR [685523]	N
588	chr6	501938	501939	rs6919639	33549134	Adolphe C	2021-02-06	Genome Med	Genetic and functional interaction network analysis reveals global enrichment of regulatory T cell genes influencing basal cell carcinoma susceptibility.	Basal cell carcinoma	17,416 European ancestry cases, 375,455 European ancestry controls	NA	6p25.3	EXOC2	rs6919639-T	0.283827	4E-8		0.06670679	[0.043-0.091] unit decrease	Affymetrix [7260263] (imputed)	N
588	chr6	503850	503851	rs71550011	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p25.3		rs71550011-C	0.931	2E-9				Affymetrix [10369434] (imputed)	N
588	chr6	514990	514991	rs13192740	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	6p25.3	EXOC2	rs13192740-T	0.602737	4E-14		0.019572299	[0.015-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
588	chr6	514990	514991	rs13192740	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6p25.3	EXOC2	rs13192740-T	0.602738	1E-17		0.02232986	[0.017-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
588	chr6	514990	514991	rs13192740	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Brown vs. black hair color	269,394 British ancestry brown hair individuals, 14,526 British ancestry black hair individuals	NA	6p25.3	EXOC2	rs13192740-C	0.3962	1E-9		1.09	NR	Affymetrix [9154080] (imputed)	N
588	chr6	520594	520595	rs71545193	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	6p25.3	EXOC2	rs71545193-A	NR	6E-8		1.0568	NR	Affymetrix, Illumina [8278136] (imputed)	N
589	chr6	530475	530476	rs6938671	34737440	Lona-Durazo F	2021-11-04	Commun Biol	A large Canadian cohort provides insights into the genetic architecture of human hair colour.	Blond vs. brown/black hair color	12,398 European ancestry individuals	NA	6p25.3		rs6938671-G	NR	2E-8		0.262299	[0.17-0.35] increase	Affymetrix, Illumina [32876187] (imputed)	N
589	chr6	530475	530476	rs6938671	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	6p25.3		rs6938671-?	NR	5E-8				NR [~ 8900000] (imputed)	N
589	chr6	532681	532682	rs755723699	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Black (UKB data field 1747_5)	20,700 European ancestry cases, 434,464 European ancestry controls	NA	6p25.3		rs755723699-G	0.001297	2E-13		1.16	[0.85-1.47] unit increase	NR [11842647] (imputed)	N
589	chr6	534978	534979	rs114902906	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	6p25.3	NR	rs114902906-G	NR	7E-13		0.0729	[0.053-0.093] unit decrease	Affymetrix [9000000] (imputed)	N
589	chr6	537156	537157	rs11242982	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		6p25.3	EXOC2	rs11242982-T	NR	4E-9		0.0368205	NR unit increase	NR [NR] (imputed)	N
589	chr6	540892	540893	rs2473486	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	6p25.3	NR	rs2473486-G	NR	2E-9		0.023	[0.016-0.03] unit increase	Affymetrix [9000000] (imputed)	N
589	chr6	541906	541907	rs12665366	31502714	Wang J	2019-09-10	Genet Epidemiol	Genome-wide association study of circulating folate one-carbon metabolites.	Blood metabolite levels	1,788 European ancestry individuals	NA	6p25.3	EXOC2	rs12665366-G	0.12	2E-8	(multi-metabolite PC1)	0.35	[0.23-0.47] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
589	chr6	542158	542159	rs6918152	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	6p25.3	EXOC2	rs6918152-A	0.363	2E-59		1.137	NR	Affymetrix [9154080] (imputed)	N
589	chr6	542158	542159	rs6918152	18483556	Han J	2008-05-16	PLoS Genet	A genome-wide association study identifies novel alleles associated with hair color and skin pigmentation.	Black vs. red hair color	2,287 European ancestry female individuals	8,465 European ancestry individuals	6p25.3	EXOC2	rs6918152-A	NR	5E-7		0.11	[0.07-0.15] hair color score increase	Illumina [528173]	N
589	chr6	542158	542159	rs6918152	18483556	Han J	2008-05-16	PLoS Genet	A genome-wide association study identifies novel alleles associated with hair color and skin pigmentation.	Black vs. blond hair color	2,287 European ancestry female individuals	8,465 European ancestry individuals	6p25.3	EXOC2	rs6918152-A	NR	6E-8		0.11	[0.07-0.15] hair color score increase	Illumina [528173]	N
589	chr6	542415	542416	rs3799296	25903422	Yin X	2015-04-23	Nat Commun	Genome-wide meta-analysis identifies multiple novel associations and ethnic heterogeneity of psoriasis susceptibility.	Psoriasis	3,496 European ancestry cases, 5,186 European ancestry controls, 1,588 Chinese ancestry cases, 3,546 Chinese ancestry controls	5,134 European ancestry cases, 5,633 European ancestry controls, 5,151 Chinese ancestry cases, 5,152 Chinese ancestry controls	6p25.3	EXOC2, IRF4	rs3799296-T	0.419	6E-6		1.09	[1.05-1.14]	Illumina [up to 4778154] (imputed)	N
589	chr6	549389	549390	rs2476847	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Inflammatory skin disease	2,079 European ancestry atopic dermatitis cases, 4,212 European ancestry psoriasis cases, 11,899 European ancestry controls	NA	6p25.3	EXOC2	rs2476847-?	NR	6E-8	(Psoriasis)			Affymetrix, Illumina [~ 5200000]	N
589	chr6	553488	553489	rs71550013	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Low tan response	46,768 European ancestry low tanning cases, 74,528 European ancestry moderate and high tanning controls	15,547 European ancestry low tanning  cases, 39,835 European moderate and high tanning ancestry controls	6p25.3	NR	rs71550013-C	NR	5E-48		0.199	[0.097-0.301] unit increase	Affymetrix [8351141] (imputed)	N
589	chr6	563209	563210	rs3765438	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6p25.3	EXOC2	rs3765438-A	0.036587	2E-13		0.044216506	[0.032-0.056] unit decrease	Affymetrix [93095623] (imputed)	N
589	chr6	566740	566741	rs2476842	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	6p25.3	NR	rs2476842-G	NR	4E-14		0.0188	[0.014-0.024] unit increase	Affymetrix [9000000] (imputed)	N
589	chr6	566740	566741	rs2476842	23064961	Shaffer JR	2012-10-11	J Dent Res	GWAS of dental caries patterns in the permanent dentition.	Dental caries	920 European ancestry individuals	NA	6p25.3	EXOC2	rs2476842-?	NR	3E-6	(DMFS3)			Illumina [518997]	N
589	chr6	577819	577820	rs9504361	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	6p25.3	EXOC2	rs9504361-G	0.44637	7E-14		0.01928324	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
589	chr6	577819	577820	rs9504361	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6p25.3	EXOC2	rs9504361-G	0.446366	6E-20		0.024070289	[0.019-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
589	chr6	577819	577820	rs9504361	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p25.3	NR	rs9504361-G	0.412563	3E-52				Affymetrix, Illumina [19872809] (imputed)	N
589	chr6	577819	577820	rs9504361	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	6p25.3	NR	rs9504361-G	0.446862	8E-56		0.032321	[0.028-0.036] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
589	chr6	577819	577820	rs9504361	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	6p25.3		rs9504361-?	NR	3E-55				NR [~ 8900000] (imputed)	N
589	chr6	577819	577820	rs9504361	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	6p25.3	EXOC2	rs9504361-G	0.4484	4E-19		0.03307642	[0.026-0.04] unit decrease	Affymetrix [~ 2500000] (imputed)	N
589	chr6	577819	577820	rs9504361	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	6p25.3	EXOC2	rs9504361-G	0.4484	7E-16		0.02990864	[0.023-0.037] unit increase	Affymetrix [~ 2500000] (imputed)	N
589	chr6	577819	577820	rs9504361	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	6p25.3	EXOC2	rs9504361-G	0.4484	8E-18		0.03174511	[0.025-0.039] unit decrease	Affymetrix [~ 2500000] (imputed)	N
589	chr6	577819	577820	rs9504361	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	6p25.3	EXOC2	rs9504361-G	0.4484	4E-17		0.03123781	[0.024-0.039] unit decrease	Affymetrix [~ 2500000] (imputed)	N
589	chr6	577819	577820	rs9504361	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	6p25.3	EXOC2	rs9504361-G	0.4484	5E-21		0.03474432	[0.028-0.042] unit decrease	Affymetrix [~ 2500000] (imputed)	N
589	chr6	577819	577820	rs9504361	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Psoriasis	4,212 European ancestry cases, 8,032 European ancestry controls	NA	6p25.3	EXOC2, IRF4	rs9504361-A	NR	3E-7		1.163	[1.129-1.198]	Affymetrix, Illumina, Perlegen [up to 5493100] (imputed)	N
589	chr6	577819	577820	rs9504361	23470693	Zeng Z	2013-03-07	J Dent Res	Genome-wide association studies of pit-and-fissure- and smooth-surface caries in permanent dentition.	Pit-and-Fissure caries	996 European ancestry individuals		6p25.3	NR	rs9504361-G	0.4504	6E-6		1.156	[NR] unit increase	Illumina [1200000] (imputed)	N
589	chr6	577819	577820	rs9504361	23143594	Tsoi LC	2012-12-01	Nat Genet	Identification of 15 new psoriasis susceptibility loci highlights the role of innate immunity.	Psoriasis	10,588 European ancestry cases, 22,806 European ancestry controls	NA	6p25.3	EXOC2, IRF4	rs9504361-A	0.546	2E-11		1.12		Illumina [111236] (imputed)	N
589	chr6	588425	588426	rs11965257	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	6p25.3	EXOC2	rs11965257-C	0.186008	2E-9		0.01711504	[0.011-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
589	chr6	588425	588426	rs11965257	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6p25.3	EXOC2	rs11965257-C	0.186037	1E-9		0.017397707	[0.012-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
589	chr6	593108	593109	rs17135234	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Vertical cup-disc ratio	25,180 European ancestry individuals	NA	6p25.3	EXOC2	rs17135234-C	0.133	8E-8		0.01	[0.0061-0.0139] unit increase	Affymetrix, Illumina [11901698] (imputed)	N
589	chr6	596078	596079	rs551965546	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Light brown (UKB data field 1747_3)	185,000 European ancestry cases, 270,164 European ancestry controls	NA	6p25.3		rs551965546-A	0.002063	1E-12		0.36	[0.26-0.46] unit decrease	NR [11842647] (imputed)	N
589	chr6	596078	596079	rs551965546	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Dark brown (UKB data field 1747_4)	171,614 European ancestry cases, 283,550 European ancestry controls	NA	6p25.3		rs551965546-A	0.001483	3E-20		0.48	[0.38-0.58] unit increase	NR [11842647] (imputed)	N
589	chr6	596078	596079	rs551965546	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Blonde (UKB data field 1747_1)	51,424 European ancestry cases, 403,740 European ancestry controls	NA	6p25.3		rs551965546-A	0.001926	2E-13		0.62	[0.45-0.79] unit decrease	NR [11842647] (imputed)	N
589	chr6	597163	597164	rs72835956	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	6p25.3	EXOC2	rs72835956-T	0.8629	4E-11		0.135	[0.095-0.175] unit decrease	Affymetrix [~ 11900000] (imputed)	N
589	chr6	597202	597203	rs113985657	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antiglaucoma preparations and miotics)	5,215 European ancestry cases, 95,653 European ancestry controls, 5,911 East Asian ancestry cases, 172,815 East Asian ancestry controls	NA	6p25.3		rs113985657-T	NR	1E-10		0.1154	[0.08-0.151] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
589	chr6	597202	597203	rs113985657	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Intraocular pressure	101,939 European ancestry cases	NA	6p25.3	NR	rs113985657-T		5E-10		0.12	[0.081-0.159] unit increase	NR [NR]	N
589	chr6	597202	597203	rs113985657	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Intraocular pressure	133,492 European ancestry individuals	NA	6p25.3	EXOC2	rs113985657-?	NR	3E-12		0.1275	[0.092-0.163] unit increase	Affymetrix, Illumina [up to 40000000] (imputed)	N
589	chr6	597202	597203	rs113985657	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Glaucoma	11,018 European ancestry cases, 126,068 European ancestry controls	NA	6p25.3	EXOC2	rs113985657-?	NR	2E-7		1.1142706	[1.06996720663555-1.16040838593347]	Affymetrix [up to 40000000] (imputed)	N
589	chr6	597202	597203	rs113985657	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	6p25.3	EXOC2	rs113985657-C	0.846	1E-15		0.146	[0.11-0.18] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
589	chr6	597202	597203	rs113985657	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	6p25.3	EXOC2	rs113985657-C	0.8473	3E-12		0.135	[0.097-0.173] unit decrease	Affymetrix [~ 11900000] (imputed)	N
589	chr6	599041	599042	rs2294664	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Sunburns	approximately 344,000 European ancestry individuals	NA	6p25.3		rs2294664-?	NR	6E-15				NR [~ 8900000] (imputed)	N
589	chr6	602982	602983	rs17135357	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	16,677 European ancestry cases, 199,580 European ancestry controls	7,286 European ancestry cases, 107,362 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	6p25.3	EXOC2	rs17135357-A	NR	1E-11		0.884441	[0.85-0.92]	Affymetrix, Illumina [14822926] (imputed)	N
589	chr6	602982	602983	rs17135357	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p25.3	NR	rs17135357-C	0.144542	1E-10				Affymetrix, Illumina [20825802] (imputed)	N
589	chr6	604157	604158	rs1747593	25865494	Chan Y	2015-04-09	Am J Hum Genet	Genome-wide Analysis of Body Proportion Classifies Height-Associated Variants by Mechanism of Action and Implicates Genes Important for Skeletal Development.	Sitting height ratio	3,545 African American individuals, 12,965 European ancestry women, 8,625 European ancestry men	NA	6p25.3	NR	rs1747593-T	0.037	4E-6	(EA)	0.118	[0.067-0.169] unit decrease	Affymetrix, Illumina [up to 10250422] (imputed)	N
589	chr6	606262	606263	rs57111852	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Intraocular pressure	133,492 European ancestry individuals	NA	6p25.3	EXOC2	rs57111852-G	0.86	5E-11				Affymetrix, Illumina [8002429] (imputed)	N
589	chr6	606262	606263	rs57111852	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Glaucoma	7,947 British ancestry cases, 119,318 British ancestry controls	NA	6p25.3	EXOC2	rs57111852-A	0.14	1E-9		1.1494253	NR	Affymetrix [at least 8002429] (imputed)	N
589	chr6	610780	610781	rs193270713	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Dark brown (UKB data field 1747_4)	171,614 European ancestry cases, 283,550 European ancestry controls	NA	6p25.3		rs193270713-G	0.00291	6E-10		0.24	[0.16-0.32] unit increase	NR [11842647] (imputed)	N
589	chr6	615735	615736	rs74445037	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Non-melanoma skin cancer	5,912 European ancestry cases, 181,740 European ancestry controls		6p25.3	NR	rs74445037-A	NR	6E-6		1.1484511	[1.08-1.22]	Affymetrix [5734850] (imputed)	N
589	chr6	620221	620222	rs9504483	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	6p25.3	NR	rs9504483-T	0.138252	4E-11		0.018326	[0.013-0.024] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
589	chr6	624921	624922	rs4959352	33888516	Zheng T	2021-04-22	Gut	Genome-wide analysis of 944 133 individuals provides insights into the etiology of haemorrhoidal disease.	Haemorrhoidal disease	218,920 European ancestry cases, 725,213 European ancestry controls	NA	6p25.3	EXOC2	rs4959352-?	0.32809999999999995	1E-8		1.02	[1.02-1.03]	Affymetrix, Illumina [8494288] (imputed)	N
589	chr6	625070	625071	rs17756712	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (multi-trait analysis)	90,939 European ancestry individuals	NA	6p25.3	EXOC2	rs17756712-A	0.82	6E-11		0.0073	NR unit decrease	Affymetrix, Illumina [8002429] (imputed)	N
589	chr6	625070	625071	rs17756712	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (adjusted for vertical disc diameter)	67,040 British ancestry individuals	NA	6p25.3	EXOC2	rs17756712-A	0.82	4E-6		0.0055	NR unit decrease	Affymetrix [at least 8002429] (imputed)	N
589	chr6	625070	625071	rs17756712	25241763	Springelkamp H	2014-09-22	Nat Commun	Meta-analysis of genome-wide association studies identifies novel loci that influence cupping and the glaucomatous process.	Vertical cup-disc ratio	18,963 European ancestry individuals, 2,131 Erasmus Rucphen individuals	2,453 Chinese ancestry individuals, 2,026 Indian ancestry individuals, 2,305 Malay ancestry individuals	6p25.3	EXOC2	rs17756712-G	NR	1E-9		0.01	[0.0061-0.0139] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
589	chr6	625187	625188	rs17135931	32121467	Adewuyi EO	2020-02-29	Genes (Basel)	Shared Molecular Genetic Mechanisms Underlie Endometriosis and Migraine Comorbidity.	Endometriosis or migraine	17,054 European and Japanese ancestry endometriosis cases, 29,208 European ancestry migraine cases, 191,858 European and Japanese ancestry controls, 172,931 European ancestry controls	NA	6p25.3	NR	rs17135931-A	NR	6E-8	(random effect)	1.06	NR	NR [6904914] (imputed)	N
589	chr6	626834	626835	rs55771940	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	6p25.3		rs55771940-T	NR	8E-10		0.0165	[0.011-0.022] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
589	chr6	637464	637465	rs2073006	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (antiglaucoma preparations and miotics)	5,215 European ancestry cases, 95,653 European ancestry controls	NA	6p25.3	EXOC2	rs2073006-T	0.136887	8E-10		0.17790861	[0.12-0.23] unit increase	Affymetrix [7288503] (imputed)	N
589	chr6	637464	637465	rs2073006	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Glaucoma	11,018 European ancestry cases, 126,068 European ancestry controls	NA	6p25.3	EXOC2	rs2073006-T	NR	1E-9		1.14	[1.10-1.18]	Affymetrix [up to 40000000] (imputed)	N
589	chr6	637464	637465	rs2073006	29891935	Choquet H	2018-06-11	Nat Commun	A multiethnic genome-wide association study of primary open-angle glaucoma identifies novel risk loci.	Glaucoma (primary open-angle)	6,687 European ancestry cases, 155,514 European ancestry controls, 204 South Asian ancestry cases, 4,916 South Asian ancestry controls, 272 African British cases, 4,831 African British controls, 22 East Asian ancestry cases, 873 East Asian ancestry controls, 144 mixed ancestry cases, 3,427 mixed ancestry controls	3,836 European ancestry cases, 48,065 European ancestry controls, 411 Hispanic cases, 4,778 Hispanic controls, 441 East Asian ancestry cases, 4,034 East Asian ancestry controls, 298 African American cases, 1,549 African American controls	6p25.3	EXOC2	rs2073006-T		3E-10		1.1627907		NR [NR] (imputed)	N
589	chr6	642016	642017	rs72835984	29891935	Choquet H	2018-06-11	Nat Commun	A multiethnic genome-wide association study of primary open-angle glaucoma identifies novel risk loci.	Glaucoma (primary open-angle)	10,523 European ancestry cases, 203,579 European ancestry controls, 411 Hispanic cases, 4,778 Hispanic controls, 463 East Asian ancestry cases, 4,907 East Asian ancestry controls, 298 African American cases, 1,549 African American controls, 204 South Asian ancestry cases, 4,916 South Asian ancestry controls, 272 African British cases, 4,831 African British controls, 144 mixed ancestry cases, 3,427 mixed ancestry controls	NA	6p25.3	EXOC2	rs72835984-T	NR	2E-15		1.1627907	[1.12-1.2]	Affymetrix [at least 665500] (imputed)	N
589	chr6	646067	646068	rs550922891	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Dark brown (UKB data field 1747_4)	171,614 European ancestry cases, 283,550 European ancestry controls	NA	6p25.3		rs550922891-G	0.00371	2E-10		0.22	[0.15-0.29] unit increase	NR [11842647] (imputed)	N
590	chr6	670870	670871	rs4960175	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	6p25.3		rs4960175-?	NR	2E-14				NR [~ 8900000] (imputed)	N
590	chr6	679343	679344	rs9405909	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	6p25.3		rs9405909-?	NR	5E-71				NR [~ 8900000] (imputed)	N
590	chr6	684033	684034	rs4960188	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	6p25.3		rs4960188-?	NR	1E-9				NR [~ 8900000] (imputed)	N
590	chr6	686109	686110	rs7765892	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Low tan response	46,768 European ancestry low tanning cases, 74,528 European ancestry moderate and high tanning controls	15,547 European ancestry low tanning  cases, 39,835 European moderate and high tanning ancestry controls	6p25.3	NR	rs7765892-C	NR	1E-17		0.076	[0.025-0.127] unit decrease	Affymetrix [8351141] (imputed)	N
590	chr6	693472	693473	rs13205146	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6p25.3		rs13205146-?	NR	2E-7		0.934816	[0.91-0.96]	NR [685523]	N
590	chr6	703141	703142	rs2804732	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6p25.3		rs2804732-?	NR	1E-8				NR [~ 8900000] (imputed)	N
590	chr6	713761	713762	rs532026461	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Blonde (UKB data field 1747_1)	51,424 European ancestry cases, 403,740 European ancestry controls	NA	6p25.3		rs532026461-A	0.007431	2E-33		0.55	[0.46-0.64] unit decrease	NR [11842647] (imputed)	N
590	chr6	720464	720465	rs2788223	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Sunburns	approximately 344,000 European ancestry individuals	NA	6p25.3		rs2788223-?	NR	2E-9				NR [~ 8900000] (imputed)	N
590	chr6	765681	765682	rs116164087	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Black (UKB data field 1747_5)	20,700 European ancestry cases, 434,464 European ancestry controls	NA	6p25.3		rs116164087-T	0.008418	9E-20		0.5	[0.39-0.61] unit increase	NR [11842647] (imputed)	N
590	chr6	785245	785246	rs188024201	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Blonde (UKB data field 1747_1)	51,424 European ancestry cases, 403,740 European ancestry controls	NA	6p25.3		rs188024201-A	0.009011	2E-11		0.25	[0.18-0.32] unit decrease	NR [11842647] (imputed)	N
591	chr6	791123	791124	rs9392881	33607172	Nygaard M	2021-02-16	Mech Ageing Dev	Genome-wide association analysis of cognitive function in Danish long-lived individuals.	Cognitive function in longevity	490 Danish ancestry individuals	NA	6p25.3	LOC101927691	rs9392881-G	0.1214	2E-6		4.441	[NR] unit decrease	Illumina [4827900] (imputed)	N
591	chr6	793059	793060	rs9505193	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	6p25.3	NR	rs9505193-C	0.3371	2E-13				NR [9056863] (imputed)	N
591	chr6	793764	793765	rs4959434	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	6p25.3	NR	rs4959434-A	0.1633	4E-12				NR [9056863] (imputed)	N
591	chr6	794332	794333	rs139066356	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	6p25.3		rs139066356-?	NR	6E-58				NR [~ 8900000] (imputed)	N
591	chr6	796415	796416	rs7751939	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	6p25.3		rs7751939-C	0.33	2E-14		7.66	z score increase	Affymetrix [9061022] (imputed)	N
591	chr6	796746	796747	rs555334473	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	6p25.3	RP11-532F6.5	rs555334473-A	0.9989	2E-6		1.7228	[1.01-2.44] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
591	chr6	813136	813137	rs151221672	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Black (UKB data field 1747_5)	20,700 European ancestry cases, 434,464 European ancestry controls	NA	6p25.3		rs151221672-G	8.74E-4	3E-11		1.19	[0.84-1.54] unit increase	NR [11842647] (imputed)	N
591	chr6	858969	858970	rs1572438	22773346	Edwards DR	2012-07-07	Age (Dordr)	Linkage and association of successful aging to the 6q25 region in large Amish kindreds.	Aging	263 Amish individuals aged 80 years or older	NA	6p25.3	HUS1B, FOXQ1	rs1572438-?	0.27	9E-6				Affymetrix [630309]	N
591	chr6	866962	866963	rs11753072	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	6p25.3		rs11753072-G	0.47	6E-11		6.55	z score increase	Affymetrix [9061022] (imputed)	N
591	chr6	875492	875493	rs10498652	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	6p25.3		rs10498652-G	0.48	1E-25		10.47	z score increase	Affymetrix [9061022] (imputed)	N
591	chr6	875492	875493	rs10498652	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	6p25.3		rs10498652-?	NR	2E-8				NR [9705931] (imputed)	N
591	chr6	875492	875493	rs10498652	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	6p25.3	NR	rs10498652-?	NR	8E-9	(left vessel)			NR [9227495] (imputed)	N
591	chr6	888820	888821	rs75269061	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota alpha diversity (Simpson index)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	6p25.3		rs75269061-A	NR	9E-6		4.438248	z score increase	Affymetrix, Illumina [NR] (imputed)	N
591	chr6	888820	888821	rs75269061	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota alpha diversity (Inverse Simpson index)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	6p25.3		rs75269061-A	NR	2E-6		4.7099843	z score increase	Affymetrix, Illumina [NR] (imputed)	N
591	chr6	889585	889586	rs115074082	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	6p25.3		rs115074082-?	NR	6E-17				NR [~ 8900000] (imputed)	N
591	chr6	890038	890039	rs4358672	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6p25.3	HUS1B	rs4358672-?	NR	7E-6	(niacinamide)	0.22758271	[0.13-0.33] unit decrease	Affymetrix [at least 2500000] (imputed)	N
591	chr6	891482	891483	rs186974323	31073882	Plotnikov D	2019-05-09	Hum Genet	A commonly occurring genetic variant within the NPLOC4-TSPAN10-PDE6G gene cluster is associated with the risk of strabismus.	Strabismus	1,345 British ancestry cases, 65,349 British ancestry controls	116 cases, 5,084 controls	6p25.3	NR	rs186974323-G	0.01	6E-6	(EA)	1.94	[1.45-2.58]	Affymetrix [7469170] (imputed)	N
592	chr6	960788	960789	rs61193515	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	6p25.3	NR	rs61193515-?	NR	3E-6		904.8752	NR unit increase	Illumina [2379855]	N
592	chr6	985195	985196	rs76647377	32313116	Manry J	2020-04-20	Commun Biol	Genome-wide association study of Buruli ulcer in rural Benin highlights role of two LncRNAs and the autophagy pathway.	Buruli ulcer (age at onset)	402 Sub-Saharan African ancestry cases	455 Sub-Saharan African ancestry cases	6p25.3	LINC01622	rs76647377-G	0.95	1E-7		2.4390244	[1.67-3.57]	Illumina [10014109] (imputed)	N
592	chr6	998812	998813	rs845868	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal cancer	978 Austrian ancestry cases, 855 Austrian ancestry controls	NA	6p25.3	Intergenic	rs845868-?		2E-6		1.4667058	[NR]	Affymetrix [492217] (imputed)	N
592	chr6	998812	998813	rs845868	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	6p25.3	Intergenic	rs845868-?	NR	9E-6		1.402	[NR]	Affymetrix [492217] (imputed)	N
592	chr6	1019361	1019362	rs845885	33762635	Martinez-Magana JJ	2021-03-24	Sci Rep	Genome-wide association study of psychiatric and substance use comorbidity in Mexican individuals.	Risky substance use	1,165 Mexican ancestry cases, 1,487 Mexican ancestry controls	NA	6p25.3		rs845885-G	0.3186	2E-6		1.36	[1.2-1.55]	Illumina [248101]	N
592	chr6	1023842	1023843	rs115023893	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Sunburns	approximately 344,000 European ancestry individuals	NA	6p25.3		rs115023893-?	NR	2E-8				NR [~ 8900000] (imputed)	N
593	chr6	1063882	1063883	rs2143396	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	6p25.3		rs2143396-?	NR	1E-12				NR [~ 8900000] (imputed)	N
593	chr6	1105798	1105799	rs17143099	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p25.3	NR	rs17143099-C	0.0122	1E-8	(HIBCH)	0.4443	NR unit increase	Illumina [1671387] (imputed)	N
593	chr6	1129036	1129037	rs77826363	30217971	Ho KWD	2018-09-14	Transl Psychiatry	Genome-wide association study of seasonal affective disorder.	Seasonality and depression	1,380 European ancestry cases, 2,937 European ancestry controls	NA	6p25.3	LINC01622, FOXQ1	rs77826363-T		1E-6		0.759	[0.45-1.06] unit increase	Affymetrix, Illumina [8153767] (imputed)	N
593	chr6	1130199	1130200	rs11751975	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Deep white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	6p25.3	AL033381.1	rs11751975-T	0.8886	8E-6		0.0378	[0.021-0.054] unit increase	Affymetrix, Illumina [NR] (imputed)	N
593	chr6	1142730	1142731	rs10214796	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Nevus count or cutaneous melanoma	36,760 European ancestry cutaneous melanoma cases, 375,188 European ancestry controls, 12,930 European ancestry individuals, 52,847 individuals	NA	6p25.3	AL033381.1	rs10214796-G	0.710071	4E-8				Affymetrix, Illumina [NR] (imputed)	N
593	chr6	1145264	1145265	rs12215602	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous malignant melanoma	36,760 European ancestry cases, 375,188 European ancestry controls	NA	6p25.3	snoU13	rs12215602-A	0.2792	8E-9		1.0622478	NR	Affymetrix, Illumina [NR] (imputed)	N
593	chr6	1161891	1161892	rs9391907	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	6p25.3	Intergenic	rs9391907-C	NR	3E-6		0.0292716	[0.017-0.042] unit increase	Illumina [13520550] (imputed)	N
593	chr6	1169046	1169047	rs9405444	24487271	Weizman A	2014-03-01	Inflamm Bowel Dis	Clinical, serologic, and genetic factors associated with pyoderma gangrenosum and erythema nodosum in inflammatory bowel disease patients.	Erythema nodosum in inflammatory bowel disease	103 European ancestry cases, 5,653 European ancestry controls	NA	6p25.3	FOXQ1	rs9405444-A	NR	8E-6		2.21	[1.60-3.10]	Illumina [2017629] (imputed)	N
594	chr6	1202177	1202178	rs238027	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	6p25.3		rs238027-?	NR	4E-15				NR [~ 8900000] (imputed)	N
594	chr6	1209009	1209010	rs17144448	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	6p25.3	NR	rs17144448-?	NR	5E-6				Affymetrix [NR]	N
594	chr6	1247929	1247930	rs238073	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	6p25.3	FOXQ1	rs238073-A	0.367832	6E-9		0.0111005	[0.0074-0.0148] unit increase	NR [13737936] (imputed)	N
594	chr6	1264257	1264258	rs2438064	31497858	Dumitrescu L	2019-09-01	Brain	Sex differences in the genetic predictors of Alzheimer's pathology.	Neurofibrillary tangles	3,275 European ancestry women	NA	6p25.3	LINC01622, FOXQ1	rs2438064-C	0.237348	1E-7		0.457715	[0.29-0.63] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
594	chr6	1295150	1295151	rs6596805	29942513	Penney ME	2018-06-13	Biomark Res	Associations of single nucleotide polymorphisms with mucinous colorectal cancer: genome-wide common variant and gene-based rare variant analyses.	Mucinous adenocarcinoma in colorectal cancer	57 European ancestry cases, 448 European ancestry controls	NA	6p25.3	NR	rs6596805-G	NR	6E-6	(univariable, recessive)	3.862	[2.139-6.908]	Illumina [729373]	N
595	chr6	1315794	1315795	rs185914258	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	6p25.3	Intergenic	rs185914258-C	1.0	4E-6	(AA)	3.495	NR unit increase	Illumina [NR] (imputed)	N
595	chr6	1318877	1318878	rs11242675	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	15,748 European ancestry cases, 18,084 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls	6p25.3	NR	rs11242675-T	0.62	1E-7		1.0416667	[1.02-1.06]	Affymetrix, Illumina [~ 11600000] (imputed)	N
595	chr6	1318877	1318878	rs11242675	23535729	Michailidou K	2013-04-01	Nat Genet	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	6p25.3	FOXQ1	rs11242675-T	0.61	7E-9		1.06	[1.04-1.09]	Affymetrix, Illumina [~ 2600000] (imputed)	N
595	chr6	1319311	1319312	rs80199833	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p25.3	NR	rs80199833-T	0.2071	7E-6	(EA)	0.0356	[0.02-0.051] unit decrease	Illumina [~ 11800000] (imputed)	N
595	chr6	1334113	1334114	rs115115053	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Deep white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	6p25.3	FOXQ1	rs115115053-T	0.0269	1E-7		0.1235	[0.078-0.169] unit increase	Affymetrix, Illumina [NR] (imputed)	N
595	chr6	1337392	1337393	rs12204590	27068588	Chauhan G	2016-04-07	Lancet Neurol	Identification of additional risk loci for stroke and small vessel disease: a meta-analysis of genome-wide association studies.	Stroke	4,348 European ancestry cases, 80,613 European ancestry controls	681 European ancestry cases, 1,331 European ancestry controls	6p25.3	FOXF2, FOXQ1	rs12204590-?	NR	1E-8		1.08	[1.05-1.12]	Affymetrix, Illumina [NR] (imputed)	N
595	chr6	1340188	1340189	rs9502893	20686608	Low SK	2010-07-29	PLoS One	Genome-wide association study of pancreatic cancer in Japanese population.	Pancreatic cancer	991 Japanese ancestry cases, 5,209 Japanese ancestry controls	NA	6p25.3	FOXQ1	rs9502893-G	0.35	3E-7	(allelic)	1.29	[1.17-1.43]	Illumina [420236]	N
595	chr6	1340741	1340742	rs147846168	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	6p25.3	Intergenic	rs147846168-A	1.0	1E-8	(AA)	3.109	NR unit increase	Illumina [NR] (imputed)	N
595	chr6	1345001	1345002	rs2317903	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6p25.3	FOXF2	rs2317903-?	NR	9E-6	(CE 20:5)	0.1892106	[0.11-0.27] unit decrease	Affymetrix [at least 2500000] (imputed)	N
595	chr6	1356915	1356916	rs4959130	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Stroke	40,585 European ancestry cases, 406,111 European ancestry controls, 17,369 East Asian ancestry cases, 28,195 East Asian ancestry controls, 2,437 South Asian ancestry cases, 6,707 South Asian ancestry controls, 5,541 African American cases, 15,154 African American controls, 365 Asian ancestry cases, 333 Asian ancestry controls, 865 Latin American cases, 692 Latin American controls	NA	6p25.3	FOXF2	rs4959130-?	NR	1E-9				NR [~ 8000000] (imputed)	N
595	chr6	1356915	1356916	rs4959130	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Stroke	40,585 European ancestry cases, 406,111 European ancestry controls	NA	6p25.3	FOXF2	rs4959130-?	NR	1E-9				NR [~ 8000000] (imputed)	N
595	chr6	1356915	1356916	rs4959130	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Ischemic stroke (small-vessel)	5,386 European ancestry cases, 192,662 European ancestry controls	NA	6p25.3	FOXF2	rs4959130-?	NR	3E-6				NR [~ 8000000] (imputed)	N
595	chr6	1356915	1356916	rs4959130	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Ischemic stroke	34,217 European ancestry cases, 406,111 European ancestry controls, 17,369 East Asian ancestry cases, 28,195 East Asian ancestry controls, 2,437 South Asian ancestry cases, 6,707 South Asian ancestry controls, 5,541 African American cases, 15,146 African American controls, 222 Asian ancestry cases, 333 Asian ancestry controls, 555 Latin American cases, 692 Latin American controls	NA	6p25.3	FOXF2	rs4959130-?	NR	3E-9				NR [~ 8000000] (imputed)	N
595	chr6	1356915	1356916	rs4959130	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Ischemic stroke	34,217 European ancestry cases, 406,111 European ancestry controls	NA	6p25.3	LINC01394, LOC105374880	rs4959130-?	NR	2E-9				NR [~ 8000000] (imputed)	N
595	chr6	1366717	1366718	rs7766042	31430377	Chung J	2019-08-20	Brain	Genome-wide association study of cerebral small vessel disease reveals established and novel loci.	Non-lobar intracerebral hemorrhage (MTAG)	at least 1,005 European ancestry cases, at least 1,711 European ancestry controls	NA	6p25.3	Intergenic	rs7766042-?	NR	7E-7		1.11	[1.06-1.15]	Affymetrix, Illumina [39235000] (imputed)	N
595	chr6	1366854	1366855	rs74597754	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume (adjusted for hypertension)	46,055 European ancestry individuals, 2,469 African American individuals	NA	6p25.3	FOXF2	rs74597754-G	0.908	8E-6		0.0479	[0.027-0.069] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
595	chr6	1366854	1366855	rs74597754	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume (adjusted for hypertension)	46,055 European ancestry individuals	NA	6p25.3	FOXF2	rs74597754-G	0.908	2E-6		0.0497	[0.029-0.07] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
595	chr6	1366854	1366855	rs74597754	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	48,454 European ancestry individuals	NA	6p25.3	FOXF2	rs74597754-G	0.908	3E-6		0.0477	[0.028-0.068] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
595	chr6	1367582	1367583	rs75294181	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	6p25.3	NR	rs75294181-A	0.0938284	2E-8		0.0294337	[0.019-0.04] unit increase	NR [19129689] (imputed)	N
595	chr6	1371556	1371557	rs76456399	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	6p25.3	NR	rs76456399-A	NR	6E-6		1.2	[NR]	Illumina [7158791] (imputed)	N
595	chr6	1377047	1377048	rs75217853	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	6p25.3	NR	rs75217853-A	0.09792500000000004	1E-14		0.0350023	[0.026-0.044] unit increase	Affymetrix [16580851] (imputed)	N
595	chr6	1377600	1377601	rs7451833	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Ischemic stroke	11,929 European ancestry cases, 472,192 European ancestry controls, 22,664 East Asian ancestry cases, 152,022 East Asian ancestry controls	NA	6p25.3		rs7451833-G	NR	6E-9		0.128	[0.085-0.171] unit increase	Affymetrix, Illumina [25844498] (imputed)	N
595	chr6	1388978	1388982	rs199564443	27157822	Hallberg P	2016-05-03	Lancet Diabetes Endocrinol	Genetic variants associated with antithyroid drug-induced agranulocytosis: a genome-wide association study in a European population.	Anti-thyroid drug induced agranulocytosis	38 European ancestry cases, 1 case, 5,170 European ancestry controls	NA	6p25.3	FOXF2	rs199564443-?	NR	7E-11	(adjusted for rs652888)	17.42	[7.38-41.12]	Illumina [9380034] (imputed)	N
595	chr6	1398192	1398193	rs115409097	30583798	Bovijn J	2018-12-21	Am J Hum Genet	GWAS Identifies Risk Locus for Erectile Dysfunction and Implicates Hypothalamic Neurobiology and Diabetes in Etiology.	Erectile dysfunction	6,175 European ancestry male cases, 217,630 European ancestry male controls	NA	6p25.3	FOXF2	rs115409097-?	NR	3E-6				Affymetrix, Illumina [at least 807411] (imputed)	N
595	chr6	1402536	1402537	rs1711973	24662972	Figueroa JD	2014-03-24	Carcinogenesis	Genome-wide interaction study of smoking and bladder cancer risk.	Bladder cancer (smoking interaction)	560 European ancestry never smoker cases, 2,442 European ancestry ever smoker cases, 1,406 European ancestry never smoker controls, 3,005 European ancestry ever smoker controls	494 European ancestry never smoker cases, 1,927 European ancestry ever smoker cases, 2,257 European ancestry never smoker controls, 3,490 European ancestry ever smoker controls	6p25.3	FOXF2	rs1711973-?	NR	3E-6	(multiplicative, prospective analysis)			Illumina [491011]	N
595	chr6	1403150	1403154	rs201569130	27622933	Li QS	2016-09-13	Transl Psychiatry	Analysis of 23andMe antidepressant efficacy survey data: implication of circadian rhythm and neuroplasticity in bupropion response.	Non-response to citalopram or escitalopram and depression	2,005 European ancestry non-responder cases, 192,083 European ancestry healthy controls	NA	6p25.3	FOXF2, FOXC1	rs201569130-?		9E-7		3.009	[1.785-5.073]	Illumina [~ 12000000] (imputed)	N
595	chr6	1408213	1408214	rs9328050	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	6p25.3		rs9328050-?	NR	8E-10				NR [~ 8900000] (imputed)	N
595	chr6	1408766	1408767	rs11756214	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	6p25.3	NR	rs11756214-G	0.258801	8E-9		0.0201189	[0.013-0.027] unit increase	NR [19129689] (imputed)	N
595	chr6	1410208	1410209	rs1711954	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	6p25.3		rs1711954-G	0.53868	4E-8		0.036866	[0.024-0.05] unit decrease	Affymetrix [15580782] (imputed)	N
595	chr6	1427052	1427053	rs1737786	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p25.3	NR	rs1737786-A	0.03484	5E-10	(FUCA1)	0.01739	NR unit increase	Illumina [1671387] (imputed)	N
596	chr6	1457728	1457729	rs2816259	27846281	Galesloot TE	2016-11-15	PLoS One	Meta-GWAS and Meta-Analysis of Exome Array Studies Do Not Reveal Genetic Determinants of Serum Hepcidin.	Hepcidin/ferritin ratio	1495 European ancestry individuals without iron deficiency or clinical inflammation, 324 European ancestry individuals, 1206 Val Borbera (founder/genetic isolated) individuals without iron deficiency or clinical inflammation, 274 Val Borbera (founder/genetic isolated) individuals, 2,695 European ancestry individuals without iron deficiency or clinical inflammation, 207 individuals	NA	6p25.3	FOXF2	rs2816259-T	0.8844	8E-6		0.1957	[0.11-0.28] unit decrease	Illumina [up to 38043574] (imputed)	N
596	chr6	1492661	1492662	rs4618572	28935272	Moore KN	2017-09-18	Gynecol Oncol	Genome-wide association study evaluating single-nucleotide polymorphisms and outcomes in patients with advanced stage serous ovarian or primary peritoneal cancer: An NRG Oncology/Gynecologic Oncology Group study.	Overall survival in serous epithelial ovarian cancer treated with paclitaxel and cisplatin	289 European ancestry women	NA	6p25.3	intergenic	rs4618572-?	NR	9E-6		1.86		Illumina [636555]	N
596	chr6	1510657	1510658	rs9405490	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Inflammatory skin disease	2,079 European ancestry atopic dermatitis cases, 4,212 European ancestry psoriasis cases, 11,899 European ancestry controls	NA	6p25.3	BC087858	rs9405490-?	NR	4E-10	(Opposed)			Affymetrix, Illumina [~ 5200000]	N
596	chr6	1524569	1524570	rs2569872	23319000	Luykx JJ	2013-01-15	Mol Psychiatry	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA/MHPG ratio)	up to 398 European ancestry individuals	NA	6p25.3	BC087858, DD413621	rs2569872-C		8E-6		0.2821	unit increase	Illumina [5767231] (imputed)	N
596	chr6	1533115	1533116	rs2317961	26752265	Bailey JN	2016-01-11	Nat Genet	Genome-wide association analysis identifies TXNRD2, ATXN2 and FOXC1 as susceptibility loci for primary open-angle glaucoma.	Glaucoma (high intraocular pressure)	1,868 European ancestry cases, 31,497 European ancestry controls		6p25.3	FOXC1	rs2317961-?		3E-8		1.3157895		Affymetrix, Illumina [6425680] (imputed)	N
596	chr6	1535997	1535998	rs11242704	22095909	Lange CM	2011-11-16	Hepatology	Serum ferritin levels are associated with a distinct phenotype of chronic hepatitis C poorly responding to pegylated interferon-alpha and ribavirin therapy.	Response to hepatitis C treatment	707 European ancestry cases	NA	6p25.3	RP11-157J24.1	rs11242704-G	NR	5E-6		0.257	[0.15-0.37] ug/L decrease	NR [NR]	N
596	chr6	1540083	1540084	rs62388641	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Daytime sleep phenotypes	874 European ancestry individuals	NA	6p25.3	FOXC1, GMDS, FOXF2, FOXQ1	rs62388641-T	NR	1E-6	(daytime napping)	0.8067	[0.48-1.13] unit decrease	Affymetrix [7141204] (imputed)	N
596	chr6	1540482	1540483	rs7739648	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	6p25.3	FOXF2, FOXCUT	rs7739648-A	0.3558	4E-21		0.138	[0.11-0.17] unit decrease	Affymetrix [~ 11900000] (imputed)	N
596	chr6	1545345	1545346	rs6596833	31219150	Ekenberg C	2019-06-13	J Infect Dis	Single nucleotide polymorphisms in HLA alleles are associated with HIV-1 viral load in demographically diverse, ART-naive participants from the START trial.	Pre-treatment viral load in HIV-1 infection	1,398 European ancestry individuals, 572 Black individuals, 418 Hispanic individuals, 13 Asian ancestry individuals, 39 individuals	NA	6p25.3	intergenic	rs6596833-C	0.086	4E-16		0.34	[0.26-0.42] unit decrease	Affymetrix [339439]	N
596	chr6	1548368	1548369	rs2745572	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glaucoma	10,411 European ancestry cases, 474,568 European ancestry controls, 8,448 East Asian ancestry cases, 168,903 East Asian ancestry controls	NA	6p25.3		rs2745572-G	NR	4E-19		0.1003	[0.078-0.122] unit decrease	Affymetrix, Illumina [25844939] (imputed)	N
596	chr6	1548368	1548369	rs2745572	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	9,179 European ancestry cases, 134,471 European ancestry controls, 1,983 East Asian ancestry cases, 13,719 East Asian ancestry controls, 127 Sub-Saharan African ancestry cases, 100 Sub-Saharan African ancestry controls	NA	6p25.3	FOXF2-FOXCUT	rs2745572-A	NR	1E-12		1.12547	[1.09-1.16]	Illumina [NR] (imputed)	N
596	chr6	1548368	1548369	rs2745572	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	8,758 European ancestry cases, 108,815 European ancestry controls, 1,996 East Asian ancestry cases, 16,559  East Asian ancestry controls, 171 Sub-Saharan African ancestry cases, 94 Sub-Saharan African ancestry controls	NA	6p25.3	FOXF2-FOXCUT	rs2745572-A	NR	4E-13		1.12468	[1.09-1.16]	Illumina [NR] (imputed)	N
596	chr6	1548368	1548369	rs2745572	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	23,963 European ancestry cases, 306,942 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	43,254 European ancestry cases, 1,471,118 European ancestry controls	6p25.3	FOXF2, FOXCUT	rs2745572-A	NR	1E-40		0.102	unit increase	Illumina [15409056] (imputed)	N
596	chr6	1548368	1548369	rs2745572	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	16,677 European ancestry cases, 199,580 European ancestry controls	7,286 European ancestry cases, 107,362 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	6p25.3	FOXF2, FOXCUT	rs2745572-A	NR	9E-20		1.13406	[1.11-1.16]	Affymetrix, Illumina [14822926] (imputed)	N
596	chr6	1548368	1548369	rs2745572	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (high intraocular pressure)	3,376 European ancestry cases, 15,151 European ancestry controls, 1,516 East Asian ancestry cases, 32,649 East Asian ancestry controls, 252 Sub-Saharan African ancestry cases, 197 Sub-Saharan African ancestry controls	NA	6p25.3	FOXF2-FOXCUT	rs2745572-A	NR	3E-13		1.20406	[1.15-1.25]	Illumina [NR] (imputed)	N
596	chr6	1548368	1548369	rs2745572	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Intraocular pressure	101,939 European ancestry cases	NA	6p25.3	NR	rs2745572-A		4E-18		0.14	[0.1-0.18] unit increase	NR [NR]	N
596	chr6	1548368	1548369	rs2745572	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Intraocular pressure	133,492 European ancestry individuals	NA	6p25.3	FOXC1	rs2745572-A	0.67	4E-22				Affymetrix, Illumina [8002429] (imputed)	N
596	chr6	1548368	1548369	rs2745572	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Glaucoma (multi-trait analysis)	133,492 European ancestry individuals with intraocular pressure measurements, 90,939 European ancestry individuals with vertical cup-disc ratio measurements, 7,947 British ancestry glaucoma cases, 119,318 British ancestry controls	6,924 European ancestry glaucoma cases, 40,230 European ancestry controls	6p25.3	FOXC1	rs2745572-A	0.67	1E-30		1.14	NR	Affymetrix, Illumina [8002429] (imputed)	N
596	chr6	1548368	1548369	rs2745572	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Glaucoma	7,947 British ancestry cases, 119,318 British ancestry controls	NA	6p25.3	FOXC1	rs2745572-A	0.67	1E-10		1.12	NR	Affymetrix [at least 8002429] (imputed)	N
596	chr6	1548368	1548369	rs2745572	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Intraocular pressure	133,492 European ancestry individuals	NA	6p25.3	FOXC1	rs2745572-?	NR	3E-22		0.1325	[0.11-0.16] unit increase	Affymetrix, Illumina [up to 40000000] (imputed)	N
596	chr6	1548368	1548369	rs2745572	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Glaucoma	11,018 European ancestry cases, 126,068 European ancestry controls	NA	6p25.3	FOXC1	rs2745572-A	NR	1E-13		1.1319027	[1.09545302590865-1.16956513472802]	Affymetrix [up to 40000000] (imputed)	N
596	chr6	1548368	1548369	rs2745572	29891935	Choquet H	2018-06-11	Nat Commun	A multiethnic genome-wide association study of primary open-angle glaucoma identifies novel risk loci.	Glaucoma (primary open-angle)	3,836 European ancestry cases, 48,065 European ancestry controls, 411 Hispanic cases, 4,778 Hispanic controls, 441 East Asian ancestry cases, 4,034 East Asian ancestry controls, 298 African American cases, 1,549 African American controls	6,687 European ancestry cases, 155,514 European ancestry controls, 204 South Asian ancestry cases, 4,916 South Asian ancestry controls, 272 African British cases, 4,831 African British controls, 22 East Asian ancestry cases, 873 East Asian ancestry controls, 144 mixed ancestry cases, 3,427 mixed ancestry controls	6p25.3	FOXC1	rs2745572-A		5E-7		1.12	[1.07-1.18]	Affymetrix [at least 665500] (imputed)	N
596	chr6	1548368	1548369	rs2745572	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	6p25.3	FOXC1	rs2745572-A	0.667	2E-28		0.151	[0.12-0.18] unit increase	Affymetrix, Illumina [NR] (imputed)	N
596	chr6	1548368	1548369	rs2745572	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	6p25.3	FOXF2, FOXCUT	rs2745572-A	0.6654	2E-27		0.1602	[0.13-0.19] unit increase	Affymetrix [~ 11900000] (imputed)	N
596	chr6	1548368	1548369	rs2745572	29235454	Choquet H	2017-12-13	Nat Commun	A large multi-ethnic genome-wide association study identifies novel genetic loci for intraocular pressure.	Intraocular pressure	56,819 European ancestry individuals, 5,748 Hispanic/Latino individuals, 5,119 East Asian ancestry individuals, 2,070 African American individuals	37,930 European and Asian ancestry individuals	6p25.3	FOXF2, FOXCUT	rs2745572-?	NR	4E-17		0.11	[NR] unit increase	Affymetrix [at least 665000] (imputed)	N
596	chr6	1548368	1548369	rs2745572	26752265	Bailey JN	2016-01-11	Nat Genet	Genome-wide association analysis identifies TXNRD2, ATXN2 and FOXC1 as susceptibility loci for primary open-angle glaucoma.	Glaucoma (primary open-angle)	3,853 European ancestry cases, 33,480 European ancestry controls	2,137 European ancestry cases, 6,699 European ancestry controls, 1,037 Singaporean Chinese ancestry cases,  2,543 Singaporean Chinese ancestry controls	6p25.3	FOXC1	rs2745572-A	0.66	5E-12	(European)	1.22	NR	Affymetrix, Illumina [6425680] (imputed)	N
596	chr6	1548368	1548369	rs2745572	26752265	Bailey JN	2016-01-11	Nat Genet	Genome-wide association analysis identifies TXNRD2, ATXN2 and FOXC1 as susceptibility loci for primary open-angle glaucoma.	Glaucoma (primary open-angle)	3,853 European ancestry cases, 33,480 European ancestry controls	2,137 European ancestry cases, 6,699 European ancestry controls, 1,037 Singaporean Chinese ancestry cases,  2,543 Singaporean Chinese ancestry controls	6p25.3	FOXC1	rs2745572-A	0.66	2E-10		1.17	NR	Affymetrix, Illumina [6425680] (imputed)	N
596	chr6	1548368	1548369	rs2745572	26752265	Bailey JN	2016-01-11	Nat Genet	Genome-wide association analysis identifies TXNRD2, ATXN2 and FOXC1 as susceptibility loci for primary open-angle glaucoma.	Glaucoma (high intraocular pressure)	1,868 European ancestry cases, 31,497 European ancestry controls		6p25.3	NR	rs2745572-A		3E-9				Affymetrix, Illumina [6425680] (imputed)	N
597	chr6	1573612	1573613	rs2338	22020760	Won HH	2011-10-21	Cancer	Polymorphic markers associated with severe oxaliplatin-induced, chronic peripheral neuropathy in colon cancer patients.	Response to platinum-based agents	96 colon cancer cases	247 colon cancer cases		FOXC1, GMDS	rs2338-?	NR	5E-6		2.27	[1.58-3.26]	Affymetrix [656843]	N
597	chr6	1595215	1595216	rs2249437	30003630	Minica CC	2018-07-13	Addiction	GENOME-WIDE ASSOCIATION META-ANALYSIS OF AGE AT FIRST CANNABIS USE.	Cannabis use (age at onset)	24,953 European ancestry individuals	3,735 European ancestry individuals	6p25.3	NR	rs2249437-T	0.4595	2E-6		0.06	[0.035-0.085] unit increase	Affymetrix, Illumina, Perlegen [6163759] (imputed)	N
597	chr6	1613685	1613686	rs2745599	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	6p25.3	FOXC1	rs2745599-A	0.552918	2E-12		0.0130097	[0.0094-0.0166] unit decrease	NR [13737936] (imputed)	N
597	chr6	1613685	1613686	rs2745599	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	6p25.3		rs2745599-?	NR	9E-10				NR [~ 8900000] (imputed)	N
597	chr6	1613685	1613686	rs2745599	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	6p25.3		rs2745599-?	NR	6E-11				NR [~ 8900000] (imputed)	N
597	chr6	1613685	1613686	rs2745599	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	6p25.3	FOXC1	rs2745599-A	0.5514	4E-14		0.1908	[0.14-0.24] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
597	chr6	1614366	1614367	rs7763581	32589924	Bi W	2020-06-23	Am J Hum Genet	A Fast and Accurate Method for Genome-Wide Time-to-Event Data Analysis and Its Application to UK Biobank.	Essential hypertension (time to event)	76,566 British ancestry cases, 206,305 British ancestry controls	NA	6p25.3	FOXC1	rs7763581-?	NR	3E-8				NR [~ 24000000] (imputed)	N
597	chr6	1615657	1615657	rs141046527	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p25.3		rs141046527-?	NR	2E-11		0.0131069	[0.009-0.0172] unit decrease	Affymetrix [20259828] (imputed)	N
597	chr6	1616264	1616265	rs62390615	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	6p25.3	FOXC1, GMDS	rs62390615-A	0.878	4E-8		0.055	[0.035-0.075] unit increase	Affymetrix [7947838] (imputed)	N
597	chr6	1616774	1616774	rs61517033	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	6p25.3		rs61517033-GGAA	NR	2E-8		0.0114	[0.0075-0.0153] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
597	chr6	1617142	1617143	rs9501744	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	6p25.3	FOXC1, GMDS	rs9501744-T	0.1296	2E-8		0.0553	[0.036-0.075] unit decrease	NR [8041861] (imputed)	N
597	chr6	1618965	1618966	rs2569880	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	6p25.3		rs2569880-A	NR	3E-9		0.0121	[0.0082-0.016] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
597	chr6	1620036	1620037	rs2569881	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	6p25.3	GMDS	rs2569881-G	0.875242	6E-8		1.07	[1.04-1.09]	NR [8126035] (imputed)	N
597	chr6	1620146	1620147	rs2569882	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	6p25.3		rs2569882-?	NR	3E-11				NR [~ 8900000] (imputed)	N
597	chr6	1620146	1620147	rs2569882	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	6p25.3		rs2569882-?	NR	8E-9				NR [~ 8900000] (imputed)	N
597	chr6	1621041	1621042	rs12209106	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	6p25.3	NR	rs12209106-T	0.6741	4E-6	(East Asian)	0.3514	[0.2-0.5] unit increase	Illumina [6200000] (imputed)	N
597	chr6	1621041	1621042	rs12209106	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	6p25.3	NR	rs12209106-T	0.6834	2E-8	(East Asian)	0.3039	[0.2-0.41] unit increase	Illumina [6200000] (imputed)	N
597	chr6	1621041	1621042	rs12209106	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	6p25.3	NR	rs12209106-T	0.6834	6E-9	(East Asian)	0.2811	[0.19-0.38] unit increase	Illumina [6200000] (imputed)	N
597	chr6	1623626	1623627	rs62390617	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6p25.3		rs62390617-?	NR	1E-17				NR [~ 8900000] (imputed)	N
597	chr6	1626543	1626544	rs2012025	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	6p25.3	NR	rs2012025-?	NR	5E-6		0.0402	[0.023-0.057] unit increase	Illumina [at least 560000] (imputed)	N
597	chr6	1632071	1632072	rs6929507	33137956	Yang Y	2020-10-29	Genes (Basel)	Secondary Genome-Wide Association Study Using Novel Analytical Strategies Disentangle Genetic Components of Cleft Lip and/or Cleft Palate in 1q32.2.	Orofacial clefts	160 African ancestry cases, 584 Asian ancestry cases, 1,068 European ancestry cases, 37 Native American ancestry cases, 849 admixed ancestry cases, 5 cases, 219 African ancestry controls, 1,433 Asian ancestry controls, 3,563 European ancestry controls, 152 Native American ancestry controls, 2,420 admixed ancestry controls, 52 controls	NA	6p25.3	GMDS	rs6929507-?	NR	2E-6	(conditional on rs72728755, rs7552, rs2235370, rs16957821, rs12600562, rs12543318, rs3845903 and rs10778143)	0.13	[0.077-0.183] unit increase	Illumina [at least 589945] (imputed)	N
597	chr6	1649031	1649032	rs2569842	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	6p25.3	GMDS	rs2569842-T	0.2847	2E-11		0.1429	[0.1-0.18] mmHg increase	Affymetrix [NR] (imputed)	N
597	chr6	1655293	1655295	rs540048168	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	6p25.3		rs540048168-C	NR	2E-9		0.0133	[0.009-0.0176] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
597	chr6	1659221	1659222	rs115625515	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Daytime sleep phenotypes	874 European ancestry individuals	NA	6p25.3	GMDS, FOXC1	rs115625515-C	NR	2E-6	(daytime resting, weekdays)	1.692	[0.99-2.39] unit decrease	Affymetrix [7141204] (imputed)	N
597	chr6	1670984	1670985	rs2814811	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	6p25.3	NR	rs2814811-A	NR	2E-9		1.044	[1.03-1.06]	Affymetrix, Illumina [29235255] (imputed)	N
597	chr6	1690340	1690341	rs9405503	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Galanin peptide levels	21,758 European ancestry individuals	9,173 individuals	6p25.3		rs9405503-A	0.9	9E-19		0.1662	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
597	chr6	1695912	1695913	rs77997740	34074324	Wan JY	2021-06-01	Diabetol Metab Syndr	Genome-wide association analysis of metabolic syndrome quantitative traits in the GENNID multiethnic family study.	Fasting glucose	281 African American individuals from 73 families, 516 European ancestry individuals from 75 families, 125 Japanese American individuals from 15 families, 598 Mexican American individuals from 96 families	NA	6p25.3	GMDS	rs77997740-C	0.01	3E-7	(African American)	1.61	[1-2.22] unit decrease	Illumina [up to 13042663] (imputed)	N
598	chr6	1705113	1705114	rs9378307	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	6p25.3		rs9378307-?	NR	3E-8				NR [~ 8900000] (imputed)	N
598	chr6	1709036	1709037	rs12197419	26926045	Adhikari K	2016-03-01	Nat Commun	A genome-wide association scan in admixed Latin Americans identifies loci influencing facial and scalp hair features.	Monobrow thickness	2,922 Latin American individuals	NA	6p25.3	FOXC1, GMDS	rs12197419-?	NR	2E-6				Illumina [9143600] (imputed)	N
598	chr6	1722292	1722293	rs4959598	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Sub-cortical grey matter volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	6p25.3	GMDS	rs4959598-?		1E-6				Illumina [4322238] (imputed)	N
598	chr6	1725791	1725792	rs9392328	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	6p25.3		rs9392328-?	NR	5E-10				NR [~ 8900000] (imputed)	N
598	chr6	1740921	1740921	rs560176773	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	6p25.3	GMDS	rs560176773-AT	0.444556	1E-13		0.016589332	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
598	chr6	1740921	1740921	rs560176773	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	6p25.3	GMDS	rs560176773-AT	0.444536	2E-11		0.01507368	[0.011-0.019] unit increase	Affymetrix [93095623] (imputed)	N
598	chr6	1759879	1759880	rs6914704	26562150	Seldin MF	2015-10-10	Mol Med	Genome-wide Association Study of Late-Onset Myasthenia Gravis: Confirmation of TNFRSF11A, and Identification of ZBTB10 and Three Distinct HLA Associations.	Late-onset myasthenia gravis	532 European ancestry cases, 2,128 European ancestry controls	NA	6p25.3	GMDS	rs6914704-C	0.51	2E-6		1.3888888		Illumina [6175472] (imputed)	N
598	chr6	1771511	1771512	rs3778519	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	6p25.3		rs3778519-?	NR	3E-8				NR [~ 8900000] (imputed)	N
598	chr6	1771511	1771512	rs3778519	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6p25.3		rs3778519-?	NR	8E-14				NR [~ 8900000] (imputed)	N
598	chr6	1775713	1775714	rs722587	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6p25.3	GMDS	rs722587-T	NR	5E-10		0.0213215	[0.015-0.028] unit decrease	Affymetrix [321114] (imputed)	N
598	chr6	1775713	1775714	rs722587	33888516	Zheng T	2021-04-22	Gut	Genome-wide analysis of 944 133 individuals provides insights into the etiology of haemorrhoidal disease.	Haemorrhoidal disease	218,920 European ancestry cases, 725,213 European ancestry controls	NA	6p25.3	GMDS	rs722587-A	0.2831	2E-31		0.95	[0.94-0.96]	Affymetrix, Illumina [8494288] (imputed)	N
598	chr6	1775713	1775714	rs722587	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6p25.3	NR	rs722587-?	NR	5E-11				Affymetrix [~ 8270000] (imputed)	N
598	chr6	1775862	1775863	rs722585	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	6p25.3		rs722585-A	0.394441	8E-9		0.0117692	[0.0078-0.0158] unit decrease	Illumina [13479295] (imputed)	N
598	chr6	1775862	1775863	rs722585	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Intraocular pressure	133,492 European ancestry individuals	NA	6p25.3	GMDS	rs722585-G	0.72	7E-12				Affymetrix, Illumina [8002429] (imputed)	N
598	chr6	1775862	1775863	rs722585	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	6p25.3	GMDS	rs722585-?	NR	6E-12		0.019912748	[0.014-0.026] unit decrease	Illumina [27896057] (imputed)	N
598	chr6	1775862	1775863	rs722585	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	6p25.3	GMDS	rs722585-G	0.715	1E-13		0.105	[0.078-0.132] unit increase	Affymetrix, Illumina [NR] (imputed)	N
598	chr6	1775862	1775863	rs722585	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p25.3	GMDS	rs722585-G	0.68	9E-9	(men)	0.032	unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
598	chr6	1777763	1777764	rs3778523	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Intraocular pressure	101,939 European ancestry cases	NA	6p25.3	NR	rs3778523-T		3E-13		0.12	[0.081-0.159] unit increase	NR [NR]	N
598	chr6	1777763	1777764	rs3778523	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Intraocular pressure	133,492 European ancestry individuals	NA	6p25.3	GMDS	rs3778523-?	NR	2E-12		0.0967	[0.07-0.124] unit increase	Affymetrix, Illumina [up to 40000000] (imputed)	N
598	chr6	1782095	1782096	rs143851325	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p25.3	NR	rs143851325-C	0.01568	5E-10	(MT1H)	0.05374	NR unit increase	Illumina [1671387] (imputed)	N
598	chr6	1785917	1785918	rs226444	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	6p25.3	NR	rs226444-A	0.4426	3E-6	(Total trans-18:1, EA)	0.0534	[0.031-0.076] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
598	chr6	1826680	1826681	rs112889634	30070759	Olsson M	2018-08-02	J Thromb Haemost	Genome-wide analysis of genetic determinants of circulating factor VII activating protease (FSAP) activity.	Plasma factor VII activating protease levels	3,126 Swedish ancestry individuals	NA	6p25.3	Intergenic	rs112889634-?		7E-6		106.7	[60.05-153.35] unit increase	Illumina [~ 10000000] (imputed)	N
599	chr6	1863873	1863874	rs3800106	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p25.3	GMDS	rs3800106-T	NR	5E-8		0.0178254	[0.011-0.024] unit decrease	Affymetrix [323123] (imputed)	N
599	chr6	1901386	1901387	rs3778546	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls	NA	6p25.3	GMDS	rs3778546-T	0.284027	4E-8		0.048194926	[0.031-0.065] unit increase	Affymetrix [7288503] (imputed)	N
599	chr6	1903589	1903590	rs3800123	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Daytime sleep phenotypes	874 European ancestry individuals	NA	6p25.3	GMDS	rs3800123-A	NR	4E-8	(daytime resting)	1.413	[0.91-1.92] unit decrease	Affymetrix [7141204] (imputed)	N
599	chr6	1917688	1917689	rs3778555	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	6p25.3	NR	rs3778555-?	NR	3E-6		0.0081918	[0.0048-0.0116] unit increase	Affymetrix [805426] (imputed)	N
599	chr6	1918261	1918262	rs3800131	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6p25.3	GMDS	rs3800131-A	0.356	9E-6	(Testosterone )	0.03	[NR] ng/mL increase	Illumina [899892]	N
599	chr6	1922906	1922907	rs11969985	25173105	Gharahkhani P	2014-08-31	Nat Genet	Common variants near ABCA1, AFAP1 and GMDS confer risk of primary open-angle glaucoma.	Glaucoma (primary open-angle)	1,155 European ancestry cases, 1,922 European ancestry controls	3,548 European ancestry cases, 9,496 European ancestry controls	6p25.3	GMDS	rs11969985-G	0.86	8E-10		1.31	[NR]	Illumina [7594768] (imputed)	N
599	chr6	1923519	1923520	rs62391624	31809533	Han X	2019-09-06	Hum Mol Genet	Genome-wide association analysis of 95 549 individuals identifies novel loci and genes influencing optic disc morphology.	Optic disc size	67,040 British ancestry individuals	28,509 European ancestry individuals	6p25.3	GMDS	rs62391624-T	0.14	9E-10		0.02	unit decrease	Affymetrix [8928767] (imputed)	N
599	chr6	1931897	1931898	rs79224643	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Hepatitis B	1,425 European ancestry cases, 218,180 European ancestry controls	NA	6p25.3	NR	rs79224643-?	NR	8E-6		0.9663	[0.59-1.34] unit increase	Illumina [at least 560000] (imputed)	N
599	chr6	1944344	1944345	rs62391629	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Anthropometric traits (multi-trait analysis)	4,988 Spanish ancestry individuals	336,107 British ancestry individuals	6p25.3	GMDS	rs62391629-?		2E-10				Illumina [9499600] (imputed)	N
599	chr6	1948702	1948703	rs12664587	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls	NA	6p25.3	GMDS	rs12664587-A	NR	1E-9		1.16358	[1.11-1.21]	Illumina [11610548] (imputed)	N
599	chr6	1950793	1950794	rs186095552	30718321	Sanchez-Roige S	2019-02-04	J Neurosci	Genome-wide association studies of impulsive personality traits (BIS-11 and UPPSP) and drug experimentation in up to 22,861 adult research participants identify loci in the CACNA1I and CADM2 genes.	Impulsivity (non-planning)	21,786 European ancestry individuals	NA	6p25.3	GMDS	rs186095552-T	0.0038	1E-6		0.475	[0.284-0.667] unit increase	Illumina [11434023] (imputed)	N
599	chr6	1951134	1951135	rs2761235	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (adjusted for vertical disc diameter)	67,040 British ancestry individuals	NA	6p25.3	GMDS	rs2761235-C	0.87	2E-10		0.00872	[0.0061-0.0114] unit increase	Affymetrix [at least 8002429] (imputed)	N
599	chr6	1958001	1958002	rs62391632	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (low intraocular pressure)	1,886 European ancestry cases, 15,151 European ancestry controls, 1,315 East Asian ancestry cases, 32,649 East Asian ancestry controls, 46 Sub-Saharan African ancestry cases, 197 Sub-Saharan African ancestry controls	NA	6p25.3	GMDS	rs62391632-T	NR	2E-11		0.764678	[0.69-0.84]	Illumina [NR] (imputed)	N
599	chr6	1958001	1958002	rs62391632	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (high intraocular pressure)	3,376 European ancestry cases, 15,151 European ancestry controls, 1,516 East Asian ancestry cases, 32,649 East Asian ancestry controls, 252 Sub-Saharan African ancestry cases, 197 Sub-Saharan African ancestry controls	NA	6p25.3	GMDS	rs62391632-T	NR	1E-6		0.848318	[0.78-0.91]	Illumina [NR] (imputed)	N
600	chr6	1980207	1980208	rs56031192	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (multi-trait analysis)	90,939 European ancestry individuals	NA	6p25.3	GMDS	rs56031192-T	0.87	6E-13		0.0091	NR unit increase	Affymetrix, Illumina [8002429] (imputed)	N
600	chr6	1983439	1983440	rs6914444	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Intraocular pressure	133,492 European ancestry individuals	NA	6p25.3	GMDS	rs6914444-T	0.86	2E-14				Affymetrix, Illumina [8002429] (imputed)	N
600	chr6	1983439	1983440	rs6914444	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Glaucoma (multi-trait analysis)	133,492 European ancestry individuals with intraocular pressure measurements, 90,939 European ancestry individuals with vertical cup-disc ratio measurements, 7,947 British ancestry glaucoma cases, 119,318 British ancestry controls	6,924 European ancestry glaucoma cases, 40,230 European ancestry controls	6p25.3	GMDS	rs6914444-T	0.86	4E-21		1.16	NR	Affymetrix, Illumina [8002429] (imputed)	N
600	chr6	1988923	1988924	rs9405157	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Intraocular pressure	101,939 European ancestry cases	NA	6p25.3	NR	rs9405157-T		8E-17		0.15	[0.11-0.19] unit increase	NR [NR]	N
600	chr6	1988923	1988924	rs9405157	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Intraocular pressure	133,492 European ancestry individuals	NA	6p25.3	GMDS	rs9405157-?	NR	2E-17		0.1369	[0.11-0.17] unit increase	Affymetrix, Illumina [up to 40000000] (imputed)	N
600	chr6	1988923	1988924	rs9405157	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	6p25.3	GMDS	rs9405157-T	0.786	1E-21		0.154	[0.12-0.19] unit increase	Affymetrix, Illumina [NR] (imputed)	N
600	chr6	1989603	1989604	rs9392348	29891935	Choquet H	2018-06-11	Nat Commun	A multiethnic genome-wide association study of primary open-angle glaucoma identifies novel risk loci.	Glaucoma (primary open-angle)	10,523 European ancestry cases, 203,579 European ancestry controls, 411 Hispanic cases, 4,778 Hispanic controls, 463 East Asian ancestry cases, 4,907 East Asian ancestry controls, 298 African American cases, 1,549 African American controls, 204 South Asian ancestry cases, 4,916 South Asian ancestry controls, 272 African British cases, 4,831 African British controls, 144 mixed ancestry cases, 3,427 mixed ancestry controls	NA	6p25.3	GMDS	rs9392348-G	NR	2E-10		1.11	1.08-1.15	Affymetrix [at least 665500] (imputed)	N
600	chr6	1997864	1997865	rs7757144	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	6p25.3	GMDS	rs7757144-A	0.6993	3E-7	(East Asian)	0.0321	[0.02-0.044] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
600	chr6	1997864	1997865	rs7757144	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	6p25.3	GMDS	rs7757144-A	0.6256	2E-11		0.022	[0.016-0.028] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
600	chr6	2016840	2016841	rs12206316	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6p25.3	GMDS	rs12206316-T	0.45723	8E-11		0.014464378	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
600	chr6	2039043	2039044	rs9503077	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	6p25.3		rs9503077-C	NR	2E-23		0.018	[0.014-0.022] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
600	chr6	2041170	2041171	rs9378671	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	6p25.3	GMDS	rs9378671-T	0.762	7E-15		0.1194	[0.087-0.152] unit increase	Affymetrix [~ 11900000] (imputed)	N
600	chr6	2047771	2047772	rs6912255	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6p25.3	GMDS	rs6912255-G	0.449272	2E-10		0.0142644225	[0.0099-0.0187] unit increase	Affymetrix [93095623] (imputed)	N
600	chr6	2050790	2050791	rs115986297	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	6p25.3		rs115986297-G	NR	2E-27		0.0191	[0.016-0.023] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
600	chr6	2050790	2050791	rs115986297	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	6p25.3		rs115986297-G	NR	4E-27		0.0179	[0.015-0.021] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
600	chr6	2050790	2050791	rs115986297	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	6p25.3		rs115986297-G	NR	1E-26		0.0181	[0.015-0.021] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
600	chr6	2050790	2050791	rs115986297	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	6p25.3	GMDS	rs115986297-G	0.543376	1E-33		0.026391655	[0.022-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
600	chr6	2050790	2050791	rs115986297	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	6p25.3	GMDS	rs115986297-G	0.543401	1E-33		0.026719721	[0.022-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
600	chr6	2050790	2050791	rs115986297	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	6p25.3	GMDS	rs115986297-G	0.543385	3E-36		0.02778851	[0.023-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
600	chr6	2050790	2050791	rs115986297	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p25.3	NR	rs115986297-G	0.575411	2E-41				Affymetrix, Illumina [24332387] (imputed)	N
600	chr6	2050790	2050791	rs115986297	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	6p25.3	NR	rs115986297-G	0.544245	1E-42		0.025232	[0.022-0.029] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
600	chr6	2050790	2050791	rs115986297	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	6p25.3	NR	rs115986297-G	0.544482	2E-38		0.023977	[0.02-0.028] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
600	chr6	2050790	2050791	rs115986297	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	6p25.3	NR	rs115986297-G	0.544425	1E-44		0.025952	[0.022-0.03] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
600	chr6	2050790	2050791	rs115986297	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p25.3	GMDS	rs115986297-A		2E-22		0.021	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
600	chr6	2050790	2050791	rs115986297	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	6p25.3		rs115986297-?	NR	1E-30				NR [~ 8900000] (imputed)	N
600	chr6	2050790	2050791	rs115986297	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	6p25.3	GMDS	rs115986297-G	0.5428	6E-19		0.03173454	[0.025-0.039] unit decrease	Affymetrix [~ 2500000] (imputed)	N
600	chr6	2050790	2050791	rs115986297	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	6p25.3	GMDS	rs115986297-G	0.5429	7E-15		0.02773504	[0.021-0.035] unit decrease	Affymetrix [~ 2500000] (imputed)	N
600	chr6	2050790	2050791	rs115986297	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	6p25.3	GMDS	rs115986297-G	0.5429	1E-17		0.03036389	[0.023-0.037] unit decrease	Affymetrix [~ 2500000] (imputed)	N
600	chr6	2053676	2053677	rs9378319	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	6p25.3	GMDS	rs9378319-T	0.7975	7E-17		0.1388	[0.1-0.17] unit increase	Affymetrix [~ 11900000] (imputed)	N
600	chr6	2055676	2055677	rs11242735	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	6p25.3	GMDS	rs11242735-G	0.762588	7E-18		0.0185608	[0.014-0.023] unit decrease	NR [13737936] (imputed)	N
600	chr6	2061258	2061259	rs538391	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p25.3	GMDS	rs538391-G	NR	4E-8		0.0163961	[0.011-0.022] unit decrease	Affymetrix [321016] (imputed)	N
600	chr6	2064647	2064648	rs676015	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	6p25.3	NR	rs676015-T	0.37	2E-13		0.014	[0.01-0.018] unit increase	NR [NR]	N
600	chr6	2071660	2071661	rs9405545	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	6p25.3		rs9405545-C	NR	3E-18		0.0115	[0.009-0.014] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
600	chr6	2091974	2091975	rs9392365	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	6p25.3		rs9392365-T	NR	4E-11		0.0171	[0.012-0.022] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
600	chr6	2094122	2094123	rs9378682	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p25.3	NR	rs9378682-C	0.580335	2E-38				Affymetrix, Illumina [24653286] (imputed)	N
600	chr6	2094122	2094123	rs9378682	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p25.3	NR	rs9378682-C	0.579367	4E-43				Affymetrix, Illumina [24558453] (imputed)	N
600	chr6	2096034	2096035	rs6914086	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	6p25.3	GMDS	rs6914086-T	0.46	3E-19		0.114	[0.089-0.139] unit increase	Affymetrix, Illumina [NR] (imputed)	N
601	chr6	2097685	2097686	rs4959631	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	6p25.3	NR	rs4959631-T	NR	5E-10		0.0149	[0.01-0.02] unit decrease	Affymetrix [9000000] (imputed)	N
601	chr6	2097685	2097686	rs4959631	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	6p25.3	NR	rs4959631-T	NR	8E-11		0.0155	[0.011-0.02] unit decrease	Affymetrix [9000000] (imputed)	N
601	chr6	2098379	2098380	rs1969668	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	6p25.3		rs1969668-?	NR	2E-11				NR [~ 8900000] (imputed)	N
601	chr6	2101912	2101913	rs9392366	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p25.3		rs9392366-?	NR	8E-10		0.0140373	[0.0097-0.0184] unit increase	Affymetrix [20259828] (imputed)	N
601	chr6	2187555	2187556	rs75749315	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris heterochromicity	329 South Asian ancestry individuals		6p25.3	CR1L	rs75749315-T	0.033	4E-6		1.041	[0.61-1.48] unit increase	Illumina [640625] (imputed)	N
601	chr6	2190845	2190846	rs9392371	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p25.3	GMDS	rs9392371-T	NR	2E-8		0.0197156	[0.013-0.027] unit increase	Affymetrix [321016] (imputed)	N
601	chr6	2195915	2195916	rs17134767	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	6p25.3		rs17134767-?	NR	1E-9				NR [~ 8900000] (imputed)	N
601	chr6	2195915	2195916	rs17134767	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6p25.3		rs17134767-?	NR	2E-27				NR [~ 8900000] (imputed)	N
602	chr6	2235632	2235633	rs9378688	21502949	Stein JL	2011-04-19	Mol Psychiatry	Discovery and replication of dopamine-related gene effects on caudate volume in young and elderly populations (N=1198) using genome-wide search.	Caudate nucleus volume	734 European ancestry individuals	464 European ancestry individuals	6p25.3	GMDS	rs9378688-A	0.12	6E-6	(Left caudate)	154.2	[87.56-220.84] mm3 decrease	Illumina [520459]	N
602	chr6	2297782	2297783	rs143303199	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6p25.3		rs143303199-?	NR	7E-9				NR [~ 8900000] (imputed)	N
602	chr6	2317002	2317003	rs185143422	30070759	Olsson M	2018-08-02	J Thromb Haemost	Genome-wide analysis of genetic determinants of circulating factor VII activating protease (FSAP) activity.	Plasma factor VII activating protease levels	3,126 Swedish ancestry individuals	NA	6p25.2	Intergenic	rs185143422-?		9E-6		121.6	[68.09-175.11] unit increase	Illumina [~ 10000000] (imputed)	N
602	chr6	2355674	2355675	rs2505675	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	6p25.2		rs2505675-T	0.3094	2E-8		0.09628652	[0.063-0.129] mmHg increase	Affymetrix, Illumina [242866] (imputed)	N
602	chr6	2355674	2355675	rs2505675	24057671	Chimusa ER	2013-09-18	Hum Mol Genet	Genome-wide association study of ancestry-specific TB risk in the South African Coloured population.	Tuberculosis	642 South African coloured cases, 91 South African coloured controls	NA	6p25.2	LOC100508120	rs2505675-T	0.85	4E-6		4.5455	[NR]	Affymetrix [up to 4467279] (imputed)	N
603	chr6	2362069	2362070	rs12191002	34437536	Akhtari FS	2021-08-26	PLoS Genet	High-throughput screening and genome-wide analyses of 44 anticancer drugs in the 1000 Genomes cell lines reveals an association of the NQO1 gene with the response of multiple anticancer drugs.	Response to vemurafenib	680 lymphoblastoid cell lines from Han Chinese ancestry, Japanese ancestry, Kenyan ancestry, Mexican ancestry, Tuscan ancestry, Yoruban ancestry, British ancestry, Columbian ancestry individuals	NA	6p25.2		rs12191002-?	NR	9E-7				Illumina [1510701]	N
603	chr6	2381491	2381492	rs11754632	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	6p25.2	GMDS-AS1	rs11754632-C	0.514321	1E-13		0.0136626	[0.01-0.017] unit decrease	NR [13737936] (imputed)	N
603	chr6	2386912	2386913	rs4959652	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 7)	3,566 European ancestry individuals	4,680 European ancestry individuals	6p25.2		rs4959652-A	0.399028849	2E-12				Illumina [7417619] (imputed)	N
603	chr6	2386912	2386913	rs4959652	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	6p25.2		rs4959652-?	NR	2E-9				NR [~ 8900000] (imputed)	N
603	chr6	2408669	2408670	rs12213061	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	6p25.2		rs12213061-?	NR	2E-8				NR [~ 8900000] (imputed)	N
603	chr6	2423946	2423947	rs4959665	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	6p25.2		rs4959665-A	0.14	1E-15		8.02	z score increase	Affymetrix [9061022] (imputed)	N
603	chr6	2429742	2429743	rs10458138	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	6p25.2	LOC100508120	rs10458138-A	0.2377	1E-9		6.049	[NR] z score decrease	Affymetrix, Illumina [~ 11000000] (imputed)	N
603	chr6	2438230	2438231	rs11758482	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	6p25.2	MAS1L, UBD, FOXC1, TRIM40, GMDS, MUC22, PSORS1C1, TCF19, MICB, SLC22A23, TNXB	rs11758482-?		2E-20				Affymetrix, Illumina [NR] (imputed)	N
603	chr6	2438230	2438231	rs11758482	31320941	Igarashi M	2019-07-05	Genes Nutr	Identification of the 12q24 locus associated with fish intake frequency by genome-wide meta-analysis in Japanese populations.	Fish intake frequency	12,603 Japanese ancestry individuals	NA	6p25.2	GMDS, C6orf195	rs11758482-G	0.405	4E-6		0.11	[0.063-0.157] unit increase	Illumina [296675]	N
603	chr6	2443180	2443181	rs6904395	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p25.2		rs6904395-?	NR	2E-13		0.016838	[0.012-0.021] unit increase	Affymetrix [20259828] (imputed)	N
603	chr6	2452696	2452697	rs7763441	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Monobrow	69,284 European ancestry individuals	NA	6p25.2	GMDS, C6orf195	rs7763441-?	NR	4E-13		0.027	[0.020-0.034] unit increase	Illumina [12039491] (imputed)	N
603	chr6	2453469	2453470	rs4959669	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	6p25.2		rs4959669-C	0.13	2E-12		7.04	z score increase	Affymetrix [9061022] (imputed)	N
603	chr6	2453469	2453470	rs4959669	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	6p25.2	NR	rs4959669-C	0.1278	2E-13				NR [9056863] (imputed)	N
603	chr6	2485467	2485468	rs9503199	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	6p25.2	GMDS-AS1	rs9503199-G	0.519393	6E-15		0.017382827	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
603	chr6	2485467	2485468	rs9503199	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6p25.2	GMDS-AS1	rs9503199-G	0.519381	2E-13		0.016363772	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
603	chr6	2485467	2485468	rs9503199	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6p25.2	GMDS-AS1	rs9503199-G	0.519353	2E-20		0.020577274	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
603	chr6	2488337	2488337	rs3053386	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	6p25.2		rs3053386-CAA	0.520227	4E-11		0.014582574	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
603	chr6	2488337	2488337	rs3053386	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	6p25.2	intergenic	rs3053386-CAA	0.5208	4E-11		0.02375221	[0.017-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
603	chr6	2488337	2488337	rs3053386	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	6p25.2	intergenic	rs3053386-CAA	0.5208	2E-10		0.0228125	[0.016-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
604	chr6	2493112	2493113	rs3966800	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	6p25.2	GMDS-AS1	rs3966800-A	0.509842	1E-33		0.0221801	[0.019-0.026] unit increase	NR [13737936] (imputed)	N
604	chr6	2496045	2496046	rs4320420	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p25.2		rs4320420-?	NR	5E-39		0.0263349	[0.022-0.03] unit increase	Affymetrix [20259828] (imputed)	N
604	chr6	2500819	2500820	rs4959677	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	6p25.2		rs4959677-?	NR	2E-12				NR [~ 8900000] (imputed)	N
604	chr6	2500819	2500820	rs4959677	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p25.2		rs4959677-?	NR	6E-39		0.0262589	[0.022-0.03] unit increase	Affymetrix [20259828] (imputed)	N
604	chr6	2500819	2500820	rs4959677	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	6p25.2	GMDS-AS1	rs4959677-G	0.510862	5E-8	(men)	0.0273008	[0.017-0.037] unit increase	NR [17166351] (imputed)	N
604	chr6	2500819	2500820	rs4959677	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	6p25.2	GMDS-AS1	rs4959677-G	0.509291	8E-16		0.026909	[0.02-0.033] unit increase	NR [17166351] (imputed)	N
604	chr6	2500819	2500820	rs4959677	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	6p25.2	GMDS-AS1	rs4959677-G	0.507919	2E-9	(women)	0.0258427	[0.017-0.035] unit increase	NR [17166351] (imputed)	N
604	chr6	2500819	2500820	rs4959677	24124408	Hong KW	2013-09-30	Genomics Inform	Genome-wide association study of orthostatic hypotension and supine-standing blood pressure changes in two korean populations.	Orthostatic hypotension	667 Korean ancestry cases,  5,761 Korean ancestry controls	NA	6p25.2	MYLK4	rs4959677-C	0.216	9E-6	(Delta DBP)	0.83	[NR] mmHg increase	Affymetrix [333651]	N
604	chr6	2501534	2501535	rs9503212	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	6p25.2	NR	rs9503212-A	0.476198	3E-11		0.012642	[0.0089-0.0164] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
604	chr6	2501827	2501828	rs1891198	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	6p25.2		rs1891198-?	NR	1E-40				NR [~ 8900000] (imputed)	N
604	chr6	2503334	2503335	rs1772976	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	6p25.2		rs1772976-T	NR	3E-15		0.0133	[0.01-0.0166] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
604	chr6	2503334	2503335	rs1772976	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	6p25.2		rs1772976-T	0.516383	4E-18		0.01937324	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
604	chr6	2503334	2503335	rs1772976	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	6p25.2		rs1772976-T	0.516398	5E-21		0.020785814	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
604	chr6	2504622	2504622	rs34978289	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	6p25.2	intergenic	rs34978289-CT	0.5159	6E-9		0.02070095	[0.014-0.028] unit decrease	Affymetrix [~ 2500000] (imputed)	N
604	chr6	2507900	2507901	rs11242779	28794112	Christophersen IE	2017-08-01	Circ Cardiovasc Genet	Fifteen Genetic Loci Associated With the Electrocardiographic P Wave.	P wave terminal force	33,955 European ancestry individuals, 6,778 African individuals	NA	6p25.2	C6orf195	rs11242779-C	0.49	2E-8	(EA)	71.0	[45.52-96.48] ms x uV decrease	Affymetrix, Illumina [at least 2402234] (imputed)	N
604	chr6	2507900	2507901	rs11242779	28794112	Christophersen IE	2017-08-01	Circ Cardiovasc Genet	Fifteen Genetic Loci Associated With the Electrocardiographic P Wave.	P wave terminal force	33,955 European ancestry individuals, 6,778 African individuals	NA	6p25.2	C6orf195	rs11242779-C	0.48	8E-9		72.0	[48.48-95.52] ms x uV decrease	Affymetrix, Illumina [at least 2402234] (imputed)	N
604	chr6	2516489	2516490	rs1254734	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	6p25.2		rs1254734-?	NR	3E-12				NR [~ 8900000] (imputed)	N
604	chr6	2518378	2518379	rs80127896	30219690	Heinzman JT	2018-09-07	J Affect Disord	GWAS and systems biology analysis of depressive symptoms among smokers from the COPDGene cohort.	Depression in smokers	1,622 European ancestry cases, 391 African American cases, 4,954 European ancestry controls, 2,749 African American controls	NA	6p25.2	LOC100508120	rs80127896-A	0.965	3E-6	(AA)			Illumina [NR] (imputed)	N
604	chr6	2518978	2518979	rs76913336	30219690	Heinzman JT	2018-09-07	J Affect Disord	GWAS and systems biology analysis of depressive symptoms among smokers from the COPDGene cohort.	Depression in smokers	1,622 European ancestry cases, 391 African American cases, 4,954 European ancestry controls, 2,749 African American controls	NA	6p25.2	C6orf195	rs76913336-C	0.965	3E-6	(AA)			Illumina [NR] (imputed)	N
604	chr6	2521999	2522000	rs9392394	30188897	Jeong C	2018-09-06	PLoS Genet	Detecting past and ongoing natural selection among ethnically Tibetan women at high altitude in Nepal.	Infant, child and juvenile death (proportion of children died <15 years)	532 Tibetan ancestry individuals	NA	6p25.2	C6orf195	rs9392394-G		1E-8		0.318	[NR] unit decrease	Illumina [3506123] (imputed)	N
604	chr6	2522807	2522808	rs11242782	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	6p25.2		rs11242782-G	0.768362	3E-11		0.0171947	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
604	chr6	2522807	2522808	rs11242782	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	6p25.2		rs11242782-G	0.768383	1E-13		0.019438248	[0.014-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
604	chr6	2522807	2522808	rs11242782	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	6p25.2		rs11242782-G	0.768378	3E-14		0.019821184	[0.015-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
604	chr6	2523194	2523195	rs7766538	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	6p25.2	NR	rs7766538-G	NR	8E-12		0.0196	[0.014-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
604	chr6	2529409	2529410	rs2624937	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	6p25.2	intergenic	rs2624937-C	NR	3E-6	(AA)			Illumina [up to 11995908] (imputed)	N
604	chr6	2560711	2560712	rs1773013	31006051	Kharazmi M	2019-04-20	Calcif Tissue Int	A Genome-Wide Association Study of Bisphosphonate-Associated Atypical Femoral Fracture.	Bisphosphonate-associated atypical femoral fracture	50 European ancestry cases, 1 Chilean ancestry case, 4,891 European ancestry controls	NA	6p25.2	intergenic	rs1773013-A	0.092	9E-7		3.277	[2.041-5.261]	Illumina [7585874] (imputed)	N
604	chr6	2565751	2565752	rs12195826	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6p25.2	C6orf195	rs12195826-A	0.407	4E-7	(Urinary nitrogen )	0.05	[NR] g/d increase	Illumina [899892]	N
604	chr6	2575906	2575907	rs4959193	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	6p25.2	C6orf195	rs4959193-A	0.442	2E-14		0.4931	[0.37-0.62] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
604	chr6	2578074	2578075	rs1680845	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	6p25.2		rs1680845-?	NR	9E-12				NR [~ 8900000] (imputed)	N
604	chr6	2580726	2580727	rs1254725	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p25.2		rs1254725-?	NR	6E-12		0.0154375	[0.011-0.02] unit increase	Affymetrix [20259828] (imputed)	N
604	chr6	2607038	2607039	rs76088706	31667592	Milet J	2019-10-30	Hum Genet	First genome-wide association study of non-severe malaria in two birth cohorts in Benin.	Recurrence of mild malaria attacks	525 Beninese individuals	250 Beninese individuals	6p25.2	C6orf195	rs76088706-T	0.025	4E-7		2.22	[1.59-3.11]	Illumina [15566900] (imputed)	N
605	chr6	2626823	2626824	rs12526097	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Longevity	up to 482,000 European ancestry individuals	NA	6p25.2	NR	rs12526097-G	NR	3E-6		0.01704	[0.0099-0.0242] unit decrease	Illumina [~ 540852]	N
605	chr6	2634938	2634939	rs6938753	30787463	Escala-Garcia M	2019-02-21	Br J Cancer	Genome-wide association study of germline variants and breast cancer-specific mortality.	Breast cancer specific mortality in estrogen receptor positive breast cancer	4,116 European ancestry cases, 60,055 European ancestry controls	NA	6p25.2	NR	rs6938753-?	NR	1E-6		0.8705196	[0.82-0.92]	Affymetrix, Illumina [~ 10400000] (imputed)	N
605	chr6	2667054	2667055	rs142480106	31667592	Milet J	2019-10-30	Hum Genet	First genome-wide association study of non-severe malaria in two birth cohorts in Benin.	Recurrence of mild malaria attacks	525 Beninese individuals	250 Beninese individuals	6p25.2	MYLK4	rs142480106-T	0.019	5E-8		2.52	[1.73-3.66]	Illumina [15566900] (imputed)	N
605	chr6	2670597	2670598	rs4959697	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	6p25.2	MYLK4	rs4959697-T	0.7435	4E-10		0.0136	[0.0093-0.0179] unit decrease	Affymetrix [18391927] (imputed)	N
605	chr6	2680731	2680732	rs2038760	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	6p25.2		rs2038760-T	NR	2E-9		0.0179	[0.012-0.024] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
605	chr6	2719978	2719979	rs4959207	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	6p25.2		rs4959207-?	NR	1E-11				NR [~ 8900000] (imputed)	N
605	chr6	2729603	2729604	rs6938004	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	6p25.2	MYLK4	rs6938004-C	0.413986	1E-11		0.0125953	[0.0089-0.0162] unit increase	NR [13737936] (imputed)	N
605	chr6	2729603	2729604	rs6938004	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p25.2		rs6938004-?	NR	1E-10		0.0131161	[0.009-0.0172] unit increase	Affymetrix [20259828] (imputed)	N
605	chr6	2739723	2739724	rs11751430	30185882	Zeiger AM	2018-09-05	Sci Rep	Genetic Determinants of Telomere Length in African American Youth.	Telomere length	492 African American children and adolescents	NA	6p25.2	MYLK4	rs11751430-C	0.091	2E-6		0.193	[0.114-0.271] unit increase	Affymetrix [7519176] (imputed)	N
605	chr6	2744010	2744011	rs73352601	33649051	Duchen D	2021-03-01	Infect Immun	Host genome wide association study of infant susceptibility to <i>Shigella</i>-associated diarrhea.	Shigella-associated diarrhea	143 Bangladeshi cases, 446 Bangladeshi controls	NA	6p25.2	MYLK4	rs73352601-?	NR	6E-6				Illumina [5729117] (imputed)	N
606	chr6	2765696	2765697	rs67462420	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	6p25.2		rs67462420-G	NR	2E-9		0.013	[0.0089-0.0171] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
606	chr6	2768904	2768905	rs3734500	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	6p25.2	WRNIP1	rs3734500-G	0.159095	1E-11		0.020707445	[0.015-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
606	chr6	2769637	2769638	rs160659	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p25.2	NR	rs160659-A	0.429599	2E-14				Affymetrix, Illumina [24588908] (imputed)	N
606	chr6	2776302	2776303	rs160699	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6p25.2	LOC340156	rs160699-?	NR	9E-6	(lactate)	0.16723002	[0.093-0.241] unit decrease	Affymetrix [at least 2500000] (imputed)	N
606	chr6	2776994	2776995	rs160697	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	6p25.2	NR	rs160697-G	0.415803	6E-11		0.012135	[0.0085-0.0158] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
606	chr6	2779939	2779940	rs898769	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	6p25.2		rs898769-C	0.299712	3E-9		0.0212689	[0.014-0.028] unit decrease	Illumina [13478928] (imputed)	N
606	chr6	2780960	2780961	rs3799239	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6p25.2	LOC340156	rs3799239-?	NR	9E-6	(ornithine)	0.15341657	[0.086-0.221] unit increase	Affymetrix [at least 2500000] (imputed)	N
606	chr6	2837845	2837846	rs316338	26584805	Dorajoo R	2015-11-19	Genes Nutr	A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.	Plasma omega-6 polyunsaturated fatty acid levels (gamma-linolenic acid)	717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls	NA	6p25.2	NR	rs316338-G	0.698	7E-6		0.1076	[0.061-0.154] unit decrease	Illumina [up to 1980188] (imputed)	N
606	chr6	2838247	2838248	rs316341	28247064	Deming Y	2017-02-28	Acta Neuropathol	Genome-wide association study identifies four novel loci associated with Alzheimer's endophenotypes and disease modifiers.	Cerebrospinal fluid AB1-42 levels	3,146 individuals	NA	6p25.2	SERPINB1	rs316341-G	0.302	2E-8		0.025	[0.017-0.033] unit decrease	Illumina [7358575] (imputed)	N
606	chr6	2840315	2840316	rs316344	31575865	Helgeland O	2019-10-01	Nat Commun	Genome-wide association study reveals dynamic role of genetic variation in infant and early childhood growth.	BMI at 5 years old	4,245 Norwegian ancestry individuals	2,209 Norwegian ancestry individuals	6p25.2	SERPINB1	rs316344-A	0.34	7E-7		0.091	[0.056-0.126] unit increase	Illumina [~ 8500000] (imputed)	N
606	chr6	2861224	2861226	rs375820810	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental longevity (mother's age at death)	52,776 middle-aged British individuals	NA	6p25.2	NR	rs375820810-?	NR	1E-6		0.0522	[0.031-0.073] unit decrease	Affymetrix [9658292] (imputed)	N
606	chr6	2877679	2877680	rs318431	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	6p25.2	RP11-420G6.4	rs318431-T	0.386526	4E-10		0.014205325	[0.0097-0.0187] unit increase	Affymetrix [93095623] (imputed)	N
606	chr6	2883314	2883315	rs318468	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	6p25.2		rs318468-C	NR	5E-8		0.0115	[0.0074-0.0156] unit decrease	Affymetrix, Illumina [20536605] (imputed)	N
607	chr6	2885929	2885930	rs9392441	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6p25.2	RP11-420G6.4	rs9392441-C	0.348012	5E-9		0.013661868	[0.0091-0.0182] unit increase	Affymetrix [93095623] (imputed)	N
607	chr6	2885929	2885930	rs9392441	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6p25.2	RP11-420G6.4	rs9392441-C	0.347984	4E-17		0.019256696	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
607	chr6	2886794	2886795	rs318473	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	6p25.2	NR	rs318473-T	0.551438	1E-11		0.012758	[0.0091-0.0164] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
607	chr6	2888212	2888213	rs318481	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p25.2	NR	rs318481-A	0.547107	2E-10				Affymetrix, Illumina [23467995] (imputed)	N
607	chr6	2903511	2903512	rs12192148	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p25.2	NR	rs12192148-G	0.136	9E-7	(IFNgamma_CXCL9_of_Monocytes)			Illumina [5084123] (imputed)	N
607	chr6	2904790	2904791	rs318493	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	6p25.2		rs318493-G	NR	6E-11		0.0142	[0.0099-0.0185] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
607	chr6	2904790	2904791	rs318493	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	6p25.2		rs318493-G	NR	2E-8		0.0135	[0.0088-0.0182] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
607	chr6	2904790	2904791	rs318493	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	6p25.2	SERPINB9	rs318493-G	0.269125	8E-10		0.015887974	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
607	chr6	2908590	2908591	rs78521699	27723757	Jin Y	2016-11-01	Nat Genet	Genome-wide association studies of autoimmune vitiligo identify 23 new risk loci and highlight key pathways and regulatory variants.	Vitiligo	2,853 European ancestry cases and 37,405 European ancestry controls	1,827 European ancestry cases and 2,181 European ancestry controls	6p25.2	SERPINB9	rs78521699-A	0.8957	3E-8		1.2627857	[1.16-1.37]	Illumina [8966411] (imputed)	N
607	chr6	2908901	2908902	rs79567239	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Left ventricular global circumferential strain	19,260 European ancestry individuals	NA	6p25.2	SERPINB9	rs79567239-G	0.1055	5E-9		0.2939	[0.2-0.39] unit increase	Affymetrix [~ 9500000] (imputed)	N
607	chr6	2957826	2957827	rs79536569	32581322	Kakuta Y	2020-06-24	Sci Rep	An Integrated Genomic and Transcriptomic Analysis Reveals Candidates of Susceptibility Genes for Crohn's Disease in Japanese Populations.	Crohn's disease	713 Japanese ancestry cases, 2,063 Japanese ancestry controls	NA	6p25.2	SERPINB6	rs79536569-?	NR	4E-6		1.23	[1.13-1.35]	NR [7424691] (imputed)	N
607	chr6	2969277	2969278	rs73718779	26956414	Berndt SI	2016-03-09	Nat Commun	Meta-analysis of genome-wide association studies discovers multiple loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	3,100 European ancestry cases, 7,667 European ancestry controls	1,958 cases,  5,530 controls	6p25.2	SERPINB6	rs73718779-A	0.11	2E-8		1.26	[1.16-1.36]	Affymetrix, Illumina [~ 8500000] (imputed)	N
607	chr6	2981771	2981772	rs4389803	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p25.2	NR	rs4389803-G	0.4373	3E-9	(NQO2)	0.04025	NR unit increase	Illumina [1671387] (imputed)	N
607	chr6	2990372	2990373	rs6920013	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p25.2	NR	rs6920013-T	0.4878	4E-14	(NQO2)	0.05202	NR unit increase	Illumina [1671387] (imputed)	N
607	chr6	2991194	2991195	rs8583	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p25.2	NR	rs8583-T	0.3049	1E-12	(NQO2)	0.05317	NR unit increase	Illumina [1671387] (imputed)	N
607	chr6	2993934	2993935	rs7772664	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p25.2	NR	rs7772664-G	0.3798	6E-21	(NQO2)	0.06365	NR unit increase	Illumina [1671387] (imputed)	N
607	chr6	2996320	2996321	rs6913474	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NQO2	5,367 Icelandic ancestry individuals	NA	6p25.2		rs6913474-C	0.3624	2E-119		0.444894	[0.41-0.48] unit increase	Illumina [7506463] (imputed)	N
607	chr6	2996320	2996321	rs6913474	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	6p25.2	NQO2	rs6913474-C	0.42	3E-88	(isoxanthopterin)	0.825	[0.74-0.91] unit increase	Illumina [7750367] (imputed)	N
607	chr6	2996320	2996321	rs6913474	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	6p25.2	NQO2	rs6913474-C	0.42	1E-29	(pterin)	0.391	[0.32-0.46] unit increase	Illumina [7750367] (imputed)	N
607	chr6	2998074	2998075	rs7746724	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NQO2	5,367 Icelandic ancestry individuals	NA	6p25.2		rs7746724-C	0.08327	5E-18		0.297324	[0.23-0.36] unit increase	Illumina [7506463] (imputed)	N
607	chr6	3001086	3001086	rs146718236	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p25.2	NR	rs146718236-CT	0.205	6E-106	(Ribosyldihydronicotinamide dehydrogenase [quinone], NQO2.9754.33.3)	0.66	[0.6-0.72] unit decrease	Affymetrix [10572788] (imputed)	N
607	chr6	3002237	3002238	rs4149352	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p25.2	NR	rs4149352-T	0.2491	5E-12	(NQO2)	0.05451	NR unit decrease	Illumina [1671387] (imputed)	N
607	chr6	3011148	3011149	rs9378352	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p25.2	NR	rs9378352-C	0.4373	9E-9	(NQO2)	0.04324	NR unit decrease	Illumina [1671387] (imputed)	N
607	chr6	3012777	3012778	rs17300141	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NQO2	5,367 Icelandic ancestry individuals	NA	6p25.2		rs17300141-A	0.0236	2E-37		0.802299	[0.68-0.93] unit increase	Illumina [7506463] (imputed)	N
607	chr6	3012777	3012778	rs17300141	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p25.2	NR	rs17300141-A	0.031	4E-37	(Ribosyldihydronicotinamide dehydrogenase [quinone], NQO2.9754.33.3)	0.89	[0.75-1.03] unit increase	Affymetrix [10572788] (imputed)	N
607	chr6	3013565	3013566	rs28383634	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p25.2	NR	rs28383634-A	0.065	4E-33	(Ribosyldihydronicotinamide dehydrogenase [quinone], NQO2.9754.33.3)	0.58	[0.48-0.68] unit decrease	Affymetrix [10572788] (imputed)	N
607	chr6	3014482	3014483	rs3823096	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p25.2	NR	rs3823096-T	0.3955	2E-25	(NQO2)	0.07198	NR unit increase	Illumina [1671387] (imputed)	N
608	chr6	3075552	3075553	rs2326173	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Cerebral white matter volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	6p25.2	RIPK1	rs2326173-?		3E-6				Illumina [4322238] (imputed)	N
608	chr6	3077140	3077141	rs2272990	24839885	Benke KS	2014-02-19	J Am Acad Child Adolesc Psychiatry	A genome-wide association meta-analysis of preschool internalizing problems.	Preschool internalizing problems	3,121 European ancestry individuals, 1,475 children from 1,031 families	NA	6p25.2	NR	rs2272990-T	0.0823	5E-7		0.39	[0.24-0.55] unit decrease	Affymetrix, Illumina [2403520] (imputed)	N
608	chr6	3111165	3111166	rs55861377	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p25.2	NR	rs55861377-T	0.02091	2E-9	(PLD3)	0.02133	NR unit increase	Illumina [1671387] (imputed)	N
608	chr6	3114456	3114457	rs17548629	28000841	Baek SH	2016-12-14	Mol Med Rep	Genome-wide association scans for idiopathic osteonecrosis of the femoral head in a Korean population.	Idiopathic osteonecrosis of the femoral head	217 Korean ancestry cases, 217 Korean ancestry controls	NA	6p25.2	RIPK1	rs17548629-?	NR	5E-6		2.0833335	[1.52-2.86]	Affymetrix [509886]	N
608	chr6	3114946	3114947	rs17548315	30718454	Arnau-Soler A	2019-02-04	Transl Psychiatry	Genome-wide by environment interaction studies of depressive symptoms and psychosocial stress in UK Biobank and Generation Scotland.	Depressive symptoms x independent stressful life events interaction (2df test)	4,919 European ancestry individuals	NA	6p25.2	RIPK1	rs17548315-A	0.01824	4E-6		0.0764885	NR unit increase	Illumina [560351]	N
608	chr6	3114946	3114947	rs17548315	30718454	Arnau-Soler A	2019-02-04	Transl Psychiatry	Genome-wide by environment interaction studies of depressive symptoms and psychosocial stress in UK Biobank and Generation Scotland.	Depressive symptoms x independent stressful life events interaction (1df test)	4,919 European ancestry individuals	NA	6p25.2	RIPK1	rs17548315-A	0.01824	3E-6		0.141617	NR unit increase	Illumina [560351]	N
608	chr6	3143865	3143866	rs35551703	32989287	Cuellar-Partida G	2020-09-28	Nat Hum Behav	Genome-wide association study identifies 48 common genetic variants associated with handedness.	Left-handedness	1,766,671 European ancestry individuals	NA	6p25.2	BPHL	rs35551703-A	0.0376	2E-12		0.93972987	[NR]	Illumina [12493444] (imputed)	N
609	chr6	3149270	3149271	rs13206421	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p25.2	NR	rs13206421-A	0.06794	8E-25	(BPHL)	0.1104	NR unit increase	Illumina [1671387] (imputed)	N
609	chr6	3162377	3162378	rs9392465	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	6p25.2	TUBB2A	rs9392465-A	0.675806	2E-18		0.020749154	[0.016-0.025] unit increase	Affymetrix [93095623] (imputed)	N
609	chr6	3162377	3162378	rs9392465	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	6p25.2	TUBB2A	rs9392465-A	0.675851	6E-9		0.013278511	[0.0088-0.0177] unit decrease	Affymetrix [93095623] (imputed)	N
609	chr6	3162377	3162378	rs9392465	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	6p25.2		rs9392465-?	NR	1E-23				NR [~ 8900000] (imputed)	N
609	chr6	3162377	3162378	rs9392465	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	6p25.2		rs9392465-?	NR	2E-10				NR [~ 8900000] (imputed)	N
609	chr6	3162377	3162378	rs9392465	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	6p25.2	TUBB2A	rs9392465-A	0.6764	1E-13		0.02830543	[0.021-0.036] unit increase	Affymetrix [~ 2500000] (imputed)	N
609	chr6	3162471	3162471	rs55635148	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	6p25.2	TUBB2A	rs55635148-CCG	0.707074	5E-9		0.014162094	[0.0094-0.0189] unit decrease	Affymetrix [93095623] (imputed)	N
609	chr6	3166967	3166968	rs35351985	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	6p25.2		rs35351985-A	NR	1E-8		0.0145	[0.0096-0.0194] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
609	chr6	3166967	3166968	rs35351985	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	6p25.2	NR	rs35351985-A	NR	1E-12		0.0303257	[0.022-0.039] unit increase	Affymetrix [16832071] (imputed)	N
609	chr6	3251780	3251781	rs76991162	33768542	Liu Y	2021-03-26	Clin Pharmacol Ther	Class II HLA Variants Associate with Risk of Pegaspargase Hypersensitivity.	Asparaginase hypersensitivity in acute lymphoblastic leukemia	310 African ancestry individuals	NA	6p25.2	NR	rs76991162-T	NR	8E-6		6.37	[NR]	Illumina [NR] (imputed)	N
609	chr6	3263490	3263491	rs4317455	29603369	Naito T	2018-03-30	J Gastroenterol Hepatol	Clinical and genetic risk factors for decreased bone mineral density in Japanese patients with inflammatory bowel disease.	Bone mineral density (femoral neck) in inflammatory bowel disease	254 Japanese ancestry cases	NA	6p25.2	SLC22A23	rs4317455-C	NR	1E-7		0.4538	[NR] unit decrease	Affymetrix [4384682] (imputed)	N
610	chr6	3281204	3281205	rs4479984	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	6p25.2	PSMG4, SLC22A23	rs4479984-T	0.861712	9E-11		0.02115308	[0.015-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
610	chr6	3287980	3287981	rs61367953	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p25.2	PSMG4, SLC22A23	rs61367953-G	0.933125	9E-12	(116 ms)	0.0727283	[0.051-0.094] unit increase	Affymetrix [10000000] (imputed)	N
610	chr6	3287980	3287981	rs61367953	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p25.2	PSMG4, SLC22A23	rs61367953-G	0.933125	7E-13	(114 ms)	0.0777514	[0.056-0.099] unit increase	Affymetrix [10000000] (imputed)	N
610	chr6	3287980	3287981	rs61367953	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p25.2	PSMG4, SLC22A23	rs61367953-G	0.933125	7E-11	(82 ms)	0.0714798	[0.05-0.093] unit increase	Affymetrix [10000000] (imputed)	N
610	chr6	3287980	3287981	rs61367953	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p25.2	PSMG4, SLC22A23	rs61367953-G	0.933125	7E-10	(84 ms)	0.0668287	[0.045-0.089] unit increase	Affymetrix [10000000] (imputed)	N
610	chr6	3287980	3287981	rs61367953	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p25.2	PSMG4, SLC22A23	rs61367953-G	0.933125	6E-9	(134 ms)	0.0625292	[0.041-0.084] unit increase	Affymetrix [10000000] (imputed)	N
610	chr6	3287980	3287981	rs61367953	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p25.2	PSMG4, SLC22A23	rs61367953-G	0.933125	6E-10	(98 ms)	0.0671264	[0.045-0.089] unit increase	Affymetrix [10000000] (imputed)	N
610	chr6	3287980	3287981	rs61367953	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p25.2	PSMG4, SLC22A23	rs61367953-G	0.933125	6E-10	(156 ms)	0.0664209	[0.045-0.088] unit increase	Affymetrix [10000000] (imputed)	N
610	chr6	3287980	3287981	rs61367953	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p25.2	PSMG4, SLC22A23	rs61367953-G	0.933125	5E-9	(90 ms)	0.0643704	[0.043-0.086] unit increase	Affymetrix [10000000] (imputed)	N
610	chr6	3287980	3287981	rs61367953	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p25.2	PSMG4, SLC22A23	rs61367953-G	0.933125	5E-10	(106 ms)	0.0675031	[0.046-0.089] unit increase	Affymetrix [10000000] (imputed)	N
610	chr6	3287980	3287981	rs61367953	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p25.2	PSMG4, SLC22A23	rs61367953-G	0.933125	4E-9	(154 ms)	0.0638317	[0.042-0.085] unit increase	Affymetrix [10000000] (imputed)	N
610	chr6	3287980	3287981	rs61367953	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p25.2	PSMG4, SLC22A23	rs61367953-G	0.933125	4E-12	(122 ms)	0.0758088	[0.054-0.098] unit increase	Affymetrix [10000000] (imputed)	N
610	chr6	3287980	3287981	rs61367953	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p25.2	PSMG4, SLC22A23	rs61367953-G	0.933125	4E-11	(148 ms)	0.0690076	[0.047-0.091] unit increase	Affymetrix [10000000] (imputed)	N
610	chr6	3287980	3287981	rs61367953	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p25.2	PSMG4, SLC22A23	rs61367953-G	0.933125	4E-11	(128 ms)	0.0698971	[0.048-0.092] unit increase	Affymetrix [10000000] (imputed)	N
610	chr6	3287980	3287981	rs61367953	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p25.2	PSMG4, SLC22A23	rs61367953-G	0.933125	3E-12	(120 ms)	0.0749531	[0.053-0.097] unit increase	Affymetrix [10000000] (imputed)	N
610	chr6	3287980	3287981	rs61367953	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p25.2	PSMG4, SLC22A23	rs61367953-G	0.933125	3E-10	(152 ms)	0.0668502	[0.045-0.089] unit increase	Affymetrix [10000000] (imputed)	N
610	chr6	3287980	3287981	rs61367953	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p25.2	PSMG4, SLC22A23	rs61367953-G	0.933125	3E-10	(136 ms)	0.0690086	[0.047-0.091] unit increase	Affymetrix [10000000] (imputed)	N
610	chr6	3287980	3287981	rs61367953	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p25.2	PSMG4, SLC22A23	rs61367953-G	0.933125	3E-10	(130 ms)	0.0660853	[0.044-0.088] unit increase	Affymetrix [10000000] (imputed)	N
610	chr6	3287980	3287981	rs61367953	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p25.2	PSMG4, SLC22A23	rs61367953-G	0.933125	3E-10	(126 ms)	0.0662138	[0.045-0.088] unit increase	Affymetrix [10000000] (imputed)	N
610	chr6	3287980	3287981	rs61367953	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p25.2	PSMG4, SLC22A23	rs61367953-G	0.933125	3E-10	(112 ms)	0.0687352	[0.047-0.09] unit increase	Affymetrix [10000000] (imputed)	N
610	chr6	3287980	3287981	rs61367953	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p25.2	PSMG4, SLC22A23	rs61367953-G	0.933125	2E-9	(166 ms)	0.063304	[0.042-0.085] unit increase	Affymetrix [10000000] (imputed)	N
610	chr6	3287980	3287981	rs61367953	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p25.2	PSMG4, SLC22A23	rs61367953-G	0.933125	2E-8	(110 ms)	0.0612496	[0.04-0.083] unit increase	Affymetrix [10000000] (imputed)	N
610	chr6	3287980	3287981	rs61367953	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p25.2	PSMG4, SLC22A23	rs61367953-G	0.933125	2E-11	(140 ms)	0.0699696	[0.048-0.092] unit increase	Affymetrix [10000000] (imputed)	N
610	chr6	3287980	3287981	rs61367953	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p25.2	PSMG4, SLC22A23	rs61367953-G	0.933125	2E-11	(138 ms)	0.0705194	[0.049-0.092] unit increase	Affymetrix [10000000] (imputed)	N
610	chr6	3287980	3287981	rs61367953	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p25.2	PSMG4, SLC22A23	rs61367953-G	0.933125	1E-9	(108 ms)	0.0660855	[0.044-0.088] unit increase	Affymetrix [10000000] (imputed)	N
610	chr6	3287980	3287981	rs61367953	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p25.2	PSMG4, SLC22A23	rs61367953-G	0.933125	1E-8	(96 ms)	0.063406	[0.042-0.085] unit increase	Affymetrix [10000000] (imputed)	N
610	chr6	3287980	3287981	rs61367953	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p25.2	PSMG4, SLC22A23	rs61367953-G	0.933125	1E-8	(172 ms)	0.060749	[0.039-0.082] unit increase	Affymetrix [10000000] (imputed)	N
610	chr6	3287980	3287981	rs61367953	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p25.2	PSMG4, SLC22A23	rs61367953-G	0.933125	1E-8	(170 ms)	0.0606286	[0.039-0.082] unit increase	Affymetrix [10000000] (imputed)	N
610	chr6	3287980	3287981	rs61367953	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p25.2	PSMG4, SLC22A23	rs61367953-G	0.933125	1E-8	(132 ms)	0.0603223	[0.039-0.082] unit increase	Affymetrix [10000000] (imputed)	N
610	chr6	3287980	3287981	rs61367953	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p25.2	PSMG4, SLC22A23	rs61367953-G	0.933125	1E-11	(142 ms)	0.0718698	[0.05-0.094] unit increase	Affymetrix [10000000] (imputed)	N
610	chr6	3287980	3287981	rs61367953	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p25.2	PSMG4, SLC22A23	rs61367953-G	0.933125	1E-10	(158 ms)	0.0680886	[0.046-0.09] unit increase	Affymetrix [10000000] (imputed)	N
610	chr6	3287980	3287981	rs61367953	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p25.2	PSMG4, SLC22A23	rs61367953-G	0.933125	1E-10	(150 ms)	0.0678752	[0.046-0.09] unit increase	Affymetrix [10000000] (imputed)	N
610	chr6	3287980	3287981	rs61367953	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p25.2	PSMG4, SLC22A23	rs61367953-G	0.933125	1E-10	(124 ms)	0.0677284	[0.046-0.089] unit increase	Affymetrix [10000000] (imputed)	N
610	chr6	3287980	3287981	rs61367953	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p25.2	PSMG4, SLC22A23	rs61367953-G	0.933125	1E-10	(118 ms)	0.0690176	[0.047-0.091] unit increase	Affymetrix [10000000] (imputed)	N
610	chr6	3294823	3294824	rs9378357	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6p25.2	SLC22A23	rs9378357-A	0.185	1E-6	(sICAM-1 )	0.03	[NR] pg/mL increase	Illumina [899892]	N
610	chr6	3295027	3295028	rs4959799	25866641	Xu W	2015-03-19	Biomark Res	A genome wide association study on Newfoundland colorectal cancer patients' survival outcomes.	Survival in rectal cancer	171 European ancestry cases	NA	6p25.2	SLC22A23	rs4959799-?		5E-6	(disease-free survival)	3.5	[2.05-5.99]	Illumina [729737]	N
610	chr6	3296996	3296997	rs4305775	28425483	Qiu F	2017-04-20	Nat Commun	A genome-wide association study identifies six novel risk loci for primary biliary cholangitis.	Primary biliary cholangitis	1,122 Han Chinese ancestry cases, 4,036 Han Chinese ancestry controls	907 Han Chinese ancestry cases, 2,127 Han Chinese ancestry controls	6p25.2	SLC22A23	rs4305775-?	0.714	2E-7		1.25	[1.14-1.35]	Illumina [776516]	N
610	chr6	3307862	3307863	rs9391988	24204828	Zheng JS	2013-10-28	PLoS One	Genome-wide contribution of genotype by environment interaction to variation of diabetes-related traits.	Homeostasis model assessment of insulin resistance (dietary factor interaction)	820 European ancestry individuals	NA	6p25.2	SLC22A23	rs9391988-A	0.353	2E-6	(Carbohydrate)			Affymetrix [590000]	N
610	chr6	3307862	3307863	rs9391988	24204828	Zheng JS	2013-10-28	PLoS One	Genome-wide contribution of genotype by environment interaction to variation of diabetes-related traits.	Fasting insulin (dietary factor interaction)	820 European ancestry individuals	NA	6p25.2	SLC22A23	rs9391988-A	0.353	2E-6	(Carbohydrate)			Affymetrix [590000]	N
610	chr6	3340716	3340717	rs9503551	28440896	Yin X	2017-04-25	Am J Med Genet B Neuropsychiatr Genet	Genome-wide meta-analysis identifies a novel susceptibility signal at CACNA2D3 for nicotine dependence.	Nicotine dependence	7,297 European ancestry cases, 5,577 European ancestry controls, 918 European ancestry whole genome sequenced cases, 921 European ancestry whole genome sequenced controls, African American cases, 1,500 African American controls	NA	6p25.2	SLC22A23	rs9503551-A		4E-6	(AA)	0.09	[0.051-0.129] unit increase	Illumina [at least 3251541] (imputed)	N
610	chr6	3359336	3359337	rs4959235	20921969	Aberg K	2010-10-05	Pharmacogenomics J	Genome-wide association study of antipsychotic-induced QTc interval prolongation.	Antipsychotic drug-induced QTc interval prolongation	738 European, African American, Hispanic, and other ancestry Schizophrenia cases	NA	6p25.2	SLC22A23	rs4959235-?	NR	2E-7	(Quetiapine)			Affymetrix [492000]	N
610	chr6	3365732	3365733	rs12205405	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	6p25.2		rs12205405-?	NR	2E-9				NR [~ 8900000] (imputed)	N
610	chr6	3369508	3369509	rs9391993	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	6p25.2	SLC22A23	rs9391993-T	0.724323	2E-13		0.018090513	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
610	chr6	3369972	3369973	rs11759126	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	6p25.2	SLC22A23	rs11759126-C	NR	2E-8		0.0229201	[0.015-0.031] unit decrease	Affymetrix [16832071] (imputed)	N
610	chr6	3371290	3371291	rs981946	21221126	Shen Y	2011-01-11	Pharmacogenomics J	Genome-wide association study of serious blistering skin rash caused by drugs.	Drug-induced Stevens-Johnson syndrome or toxic epidermal necrolysis (SJS/TEN)	up to 72 European ancestry cases, up to 4,251 European ancestry controls	NA	6p25.2	SLC22A23	rs981946-?	NR	9E-6		2.3	[1.6-3.4]	Illumina [up to 1000000]	N
610	chr6	3375300	3375301	rs3734219	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	6p25.2	SLC22A23	rs3734219-T	0.4454	5E-10		0.02218689	[0.015-0.029] unit decrease	Affymetrix [~ 2500000] (imputed)	N
611	chr6	3420405	3420406	rs13204048	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	6p25.2	NR	rs13204048-A	0.61	1E-6	(EA)	1.0509611		Affymetrix, Illumina [~ 9000000] (imputed)	N
611	chr6	3420405	3420406	rs13204048	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	6p25.2	intergenic	rs13204048-A	0.61	3E-8	(EA)	1.0708697	[1.05-1.1]	Affymetrix, Illumina [~ 9000000] (imputed)	N
611	chr6	3423546	3423547	rs61614579	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p25.2	NR	rs61614579-T	0.99055	2E-22				Affymetrix, Illumina [22063850] (imputed)	N
611	chr6	3423586	3423587	rs58167401	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	6p25.2		rs58167401-?	NR	2E-21				NR [~ 8900000] (imputed)	N
611	chr6	3428083	3428084	rs139157944	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	6p25.2	SLC22A23	rs139157944-C	0.00653300000000001	2E-24		0.14334387	[0.12-0.17] unit increase	Affymetrix [93095623] (imputed)	N
611	chr6	3433317	3433318	rs17309827	21102463	Franke A	2010-11-21	Nat Genet	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry trios	6p25.2	intergenic	rs17309827-T	0.639	7E-9		1.1	[1.05-1.16]	Affymetrix, Illumina [953241] (imputed)	N
611	chr6	3439357	3439358	rs112136863	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	6p25.2		rs112136863-A	NR	3E-13		0.1027	[0.075-0.13] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
611	chr6	3439696	3439697	rs17136561	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	6p25.2	SLC22A23	rs17136561-G	0.191051	1E-17		0.024082627	[0.019-0.03] unit increase	Affymetrix [93095623] (imputed)	N
611	chr6	3439696	3439697	rs17136561	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p25.2	NR	rs17136561-T	0.808942	1E-33				Affymetrix, Illumina [17210439] (imputed)	N
611	chr6	3439696	3439697	rs17136561	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	6p25.2	NR	rs17136561-T	0.808935	6E-36		0.030771	[0.026-0.036] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
611	chr6	3442987	3442988	rs17250853	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	6p25.2	SLC22A23	rs17250853-T	0.187884	3E-13		0.023386424	[0.017-0.03] unit increase	Affymetrix [93095623] (imputed)	N
611	chr6	3445535	3445536	rs733354	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	6p25.2	SLC22A23	rs733354-G	0.4617	3E-8		0.011291989	[0.0073-0.0153] unit increase	Affymetrix [up to 18485882] (imputed)	N
611	chr6	3446262	3446263	rs9503598	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	6p25.2	SLC22A23	rs9503598-A	0.442113	2E-9		0.015179636	[0.01-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
611	chr6	3446262	3446263	rs9503598	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	6p25.2	SLC22A23	rs9503598-A	0.4442	3E-11		0.013570153	[0.0096-0.0176] unit increase	Affymetrix [up to 18485882] (imputed)	N
611	chr6	3446262	3446263	rs9503598	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	6p25.2	SLC22A23	rs9503598-A	NR	1E-11		0.020761741	[0.015-0.027] unit increase	Affymetrix [NR]	N
611	chr6	3446262	3446263	rs9503598	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability (MTAG)	436,124 European ancestry individuals	NA	6p25.2	SLC22A23	rs9503598-?	NR	2E-9		6.026	z score increase	Affymetrix, Illumina, Perlegen [7333576] (imputed)	N
611	chr6	3446262	3446263	rs9503598	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability	107,207 European ancestry individuals	NA	6p25.2	SLC22A23	rs9503598-?	NR	3E-6		4.7	z score increase	Affymetrix, Illumina [7357080] (imputed)	N
611	chr6	3448644	3448645	rs9378796	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	6p25.2	SLC22A23	rs9378796-T	0.2439	8E-13		0.03051591	[0.022-0.039] unit increase	Affymetrix [~ 2500000] (imputed)	N
611	chr6	3450813	3450814	rs11759522	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p25.2	SLC22A23	rs11759522-C	NR	3E-8		5.568	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
611	chr6	3451047	3451048	rs9503599	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	6p25.2	NR	rs9503599-T	NR	8E-10		6.144	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
611	chr6	3452244	3452245	rs7758776	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	6p25.2		rs7758776-?	NR	9E-15				NR [~ 8900000] (imputed)	N
611	chr6	3452244	3452245	rs7758776	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	6p25.2		rs7758776-?	NR	3E-9				NR [~ 8900000] (imputed)	N
611	chr6	3464068	3464069	rs9502009	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p25.2	SLC22A23	rs9502009-C	0.798949	3E-8	(144 ms)	0.037197	[0.024-0.051] unit increase	Affymetrix [10000000] (imputed)	N
611	chr6	3464073	3464074	rs12524795	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	6p25.2	Intergenic	rs12524795-T	0.4354	2E-11	(MTAG)	0.0111	[0.0078-0.0144] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
611	chr6	3464073	3464074	rs12524795	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6p25.2		rs12524795-T	0.4374	5E-13		0.0102	[0.0075-0.0129] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
611	chr6	3464073	3464074	rs12524795	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6p25.2	Intergenic	rs12524795-T	0.4374	7E-16	(MTAG)	0.0107	[0.0082-0.0132] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
611	chr6	3464073	3464074	rs12524795	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	6p25.2	Intergenic	rs12524795-T	0.451	4E-11	(MTAG)	0.0152	[0.011-0.02] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
611	chr6	3465929	3465930	rs10155771	33563987	Tyrrell J	2021-02-09	Nat Commun	Genetic predictors of participation in optional components of UK Biobank.	Participation in an health questionnaire (not invited vs invited)	336,633 European ancestry cases, 114,464 European ancestry controls	NA	6p25.2	NR	rs10155771-G	0.547981	2E-8		1.005	[1.003, 1.007]	Affymetrix [39302896] (imputed)	N
611	chr6	3466766	3466767	rs138692864	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	6p25.2	intergenic	rs138692864-A	0.0049	3E-10		0.1671573	[0.11-0.22] unit increase	Affymetrix [~ 2500000] (imputed)	N
611	chr6	3468877	3468878	rs6596978	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6p25.2		rs6596978-T	0.5121	9E-14	(conditional-joint)	0.0105	[0.0078-0.0132] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
612	chr6	3581088	3581089	rs7748275	30898391	Lawrenson K	2019-03-19	Gynecol Oncol	Genome-wide association studies identify susceptibility loci for epithelial ovarian cancer in east Asian women.	Epithelial ovarian cancer	3,238 East Asian ancestry cases, 4,083 East Asian ancestry controls	NA	6p25.2		rs7748275-A	0.16	9E-9	(serous)	1.4	[1.2-1.5]	Illumina [11595112] (imputed)	N
612	chr6	3581088	3581089	rs7748275	30898391	Lawrenson K	2019-03-19	Gynecol Oncol	Genome-wide association studies identify susceptibility loci for epithelial ovarian cancer in east Asian women.	Epithelial ovarian cancer	3,238 East Asian ancestry cases, 4,083 East Asian ancestry controls	NA	6p25.2		rs7748275-A	0.16	4E-8	(HGSOC)	1.4	[1.2-1.5]	Illumina [11595112] (imputed)	N
613	chr6	3769744	3769745	rs11242880	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Isthmus-cingulate cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	6p25.2	NR	rs11242880-?		1E-6				Illumina [4322238] (imputed)	N
614	chr6	3837197	3837198	rs17318866	23648065	Low SK	2013-05-04	Cancer Sci	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (camptothecin)	59 Japanese ancestry cases, 155 Japanese ancestry controls	NA	6p25.2	FAM50B	rs17318866-G	0.79	1E-6	(Allelic model)	7.559	[2.689-21.263]	Illumina [733202]	N
614	chr6	3866025	3866026	rs146144484	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	6p25.2	RP11-420L9.4	rs146144484-T	0.0106	7E-7		0.1864	[0.11-0.26] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
614	chr6	3866025	3866026	rs146144484	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference	1,254 whole genome sequenced European ancestry individuals, 3,074 whole genome sequenced individuals, 29,716 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 701 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,050 Mylopotamos (founder/genetic isolate) individuals, 883 Pomak (founder/genetic isolate) individuals	205,909 European ancestry individuals	6p25.2	RP11-420L9.4	rs146144484-T	0.0108	1E-7		0.2389	[0.15-0.33] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
614	chr6	3894314	3894315	rs187885921	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	6p25.2	Intergenic	rs187885921-C	0.999	4E-6	(AA)	0.366	unit increase	Illumina [NR] (imputed)	N
614	chr6	3894314	3894315	rs187885921	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	6p25.2	Intergenic	rs187885921-C	0.999	5E-6	(AA)	1.821	NR unit increase	Illumina [NR] (imputed)	N
614	chr6	3904238	3904239	rs146807753	28736931	Rotroff DM	2017-07-24	Clin Pharmacol Ther	Genetic Variants in HSD17B3, SMAD3, and IPO11 Impact Circulating Lipids in Response to Fenofibrate in Individuals With Type 2 Diabetes.	Total cholesterol change in response to fenofibrate in statin-treated type 2 diabetes	781 European ancestry individuals, 138 African American ancestry individuals, 345 unknown ancestry individuals		6p25.2	intergenic	rs146807753-?	NR	7E-7	(AA)	0.06	unit increase	Affymetrix, Illumina [8129838] (imputed)	N
614	chr6	3906276	3906277	rs75215148	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p25.2	NR	rs75215148-A	0.0122	2E-8	(RAB14)	0.02373	NR unit increase	Illumina [1671387] (imputed)	N
614	chr6	3915449	3915450	rs9503803	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	6p25.2	NR	rs9503803-?	NR	2E-28				Affymetrix [NR]	N
614	chr6	3919559	3919560	rs6906656	29520036	Stein MB	2018-03-08	Mol Psychiatry	Genome-wide analysis of insomnia disorder.	Insomnia	2,297 European American cases, 334 African American cases, 606 Latino American cases, 9,176 European American controls, 2,345 African American controls, 2,893 Latino American controls	NA	6p25.2	BX105115, RP1-140K8.2	rs6906656-A	NR	1E-7	(Hispanic)	1.57		Illumina [at least 360704] (imputed)	N
614	chr6	3921058	3921059	rs12198895	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total esterified cholesterol levels	115,082 European ancestry individuals	NA	6p25.2		rs12198895-G	0.717801	4E-8		0.0243971	[0.016-0.033] unit decrease	NR [11722792] (imputed)	N
614	chr6	3921058	3921059	rs12198895	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large LDL	115,082 European ancestry individuals	NA	6p25.2		rs12198895-G	0.717801	5E-8		0.0246048	[0.016-0.033] unit decrease	NR [11722792] (imputed)	N
615	chr6	3961287	3961288	rs7743464	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on self-rated math ability (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	6p25.2		rs7743464-?	NR	1E-9				NR [NR]	N
615	chr6	3961287	3961288	rs7743464	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on highest math class (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	6p25.2		rs7743464-?	NR	2E-9				NR [NR]	N
615	chr6	3961287	3961288	rs7743464	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on educational attainment (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	6p25.2		rs7743464-?	NR	1E-9				NR [NR]	N
615	chr6	3961287	3961288	rs7743464	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on cognitive performance (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	6p25.2		rs7743464-?	NR	2E-9				NR [NR]	N
615	chr6	3961287	3961288	rs7743464	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on average household income before tax (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	6p25.2		rs7743464-?	NR	3E-9				NR [NR]	N
615	chr6	3961287	3961288	rs7743464	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on Townsend deprivation index (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	6p25.2		rs7743464-?	NR	2E-9				NR [NR]	N
615	chr6	3961287	3961288	rs7743464	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Neuroticism	170,911 European ancestry individuals	NA	6p25.2	NR	rs7743464-T	0.476	2E-6		0.016462453	[0.0097-0.0232] unit decrease	Affymetrix [up to 6544775] (imputed)	N
615	chr6	4050257	4050258	rs200167108	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Skin cancer	25,928 European ancestry cases, 466,275 European ancestry controls, 154 East Asian ancestry cases, 178,572 East Asian ancestry controls	NA	6p25.2		rs200167108-G	NR	3E-9		0.1375	[0.092-0.183] unit increase	Affymetrix, Illumina [25845421] (imputed)	N
615	chr6	4058037	4058038	rs853410	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	6p25.2	PRPF4B, FAM217A, C6orf201, ECI2	rs853410-G	NR	9E-6	(sleep onset, weekdays)	0.3658	[0.2-0.53] unit increase	Affymetrix [7141204] (imputed)	N
616	chr6	4145201	4145202	rs13437316	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p25.2	ECI2	rs13437316-T	0.7115625	9E-7	(ECI2, 12859_33_3)	0.13408825	[0.081-0.188] unit increase	Illumina [> 1000000] (imputed)	N
616	chr6	4146197	4146198	rs9392556	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	6p25.2	ECI2	rs9392556-T	0.66	4E-38	(X-13435)	0.036	[0.03-0.042] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
616	chr6	4160294	4160295	rs536247550	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	6p25.2	NR	rs536247550-?	NR	7E-6		0.0077195	[0.0044-0.0111] unit decrease	Affymetrix [805426] (imputed)	N
616	chr6	4186721	4186722	rs664369	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Superior frontal gyrus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	6p25.2	NR	rs664369-?		4E-6				Illumina [4322238] (imputed)	N
617	chr6	4223940	4223941	rs12208271	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Neuroticism	170,911 European ancestry individuals	NA	6p25.1	NR	rs12208271-A	0.956	2E-6		0.04621549	[0.027-0.065] unit increase	Affymetrix [up to 6544775] (imputed)	N
617	chr6	4255639	4255640	rs9502153	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	6p25.1	NR	rs9502153-?	NR	3E-6				Affymetrix [NR]	N
618	chr6	4341024	4341025	rs142081550	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		AL162718.1	rs142081550-?	NR	7E-11	(male)	2.97363	[NR] unit decrease	Affymetrix [NR] (imputed)	N
618	chr6	4341024	4341025	rs142081550	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		AL162718.1	rs142081550-?	NR	1E-12		2.54858	[NR] unit decrease	Affymetrix [NR] (imputed)	N
618	chr6	4366707	4366708	rs559602	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	6p25.1		rs559602-C	0.647	3E-8		0.007	[0.005-0.009] unit increase	NR [NR] (imputed)	N
618	chr6	4372068	4372069	rs73717307	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris heterochromicity	329 South Asian ancestry individuals		6p25.1	intergenic	rs73717307-T	0.014	3E-6		1.866	[1.09-2.64] unit decrease	Illumina [640625] (imputed)	N
618	chr6	4379510	4379511	rs17138114	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6p25.1	KU-MEL-3, PECI, ECI2	rs17138114-G	0.222	1E-6	(Birth weight )	0.04	[NR] kg increase	Illumina [899892]	N
618	chr6	4383331	4383332	rs4142082	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	6p25.1		rs4142082-?	NR	2E-11				NR [~ 8900000] (imputed)	N
618	chr6	4383331	4383332	rs4142082	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	6p25.1	NR	rs4142082-G	0.375527	1E-17		0.0269718	[0.021-0.033] unit increase	NR [19129689] (imputed)	N
618	chr6	4388868	4388869	rs114646609	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Klebsiella pneumoniae abundance in stool	5,959 Finnish ancestry individuals	NA	6p25.1		rs114646609-T	0.0112814	3E-9		0.28863	[0.19-0.38] unit increase	Illumina [7980478] (imputed)	N
618	chr6	4388868	4388869	rs114646609	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Klebsiella abundance in stool	5,959 Finnish ancestry individuals	NA	6p25.1		rs114646609-T	0.0112814	8E-10		0.301878	[0.21-0.4] unit increase	Illumina [7980478] (imputed)	N
618	chr6	4445334	4445338	rs145711907	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p25.1	NR	rs145711907-T	0.4615	2E-6	(EA)	0.0299	[0.018-0.042] unit increase	Illumina [~ 11800000] (imputed)	N
619	chr6	4474086	4474087	rs567635227	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	6p25.1	RP11-274H24.1	rs567635227-A	0.0015	5E-6		0.8281	[0.47-1.18] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
619	chr6	4501339	4501340	rs2181016	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	6p25.1	NR	rs2181016-?	NR	7E-6				Affymetrix [NR]	N
619	chr6	4571658	4571659	rs385884	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	6p25.1		rs385884-?	NR	2E-10				NR [~ 8900000] (imputed)	N
620	chr6	4592688	4592689	rs11963606	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage colony stimulating factor levels	840 Finnish ancestry individuals	NA	6p25.1	NR	rs11963606-G	NR	6E-6		0.5414	[0.31-0.77] SD units increase	NR [10700000] (imputed)	N
620	chr6	4604346	4604347	rs6597081	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	6p25.1	NR	rs6597081-T	0.296169	9E-12		0.0232858	[0.017-0.03] unit increase	NR [19129689] (imputed)	N
620	chr6	4610765	4610766	rs2294871	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	6p25.1		rs2294871-?	NR	9E-10				NR [~ 8900000] (imputed)	N
620	chr6	4644600	4644601	rs12204701	30009487	Schoeler NE	2018-07-16	Epilepsia	Genome-wide association study: Exploring the genetic basis for responsiveness to ketogenic dietary therapies for drug-resistant epilepsy.	Response to ketogenic dietary therapies in epilepsy	123 responders, 112 non-responders	NA	6p25.1	CDYL	rs12204701-A	0.0938	4E-8		13.5	[4.07-44.8]	Illumina [4819069] (imputed)	N
620	chr6	4701143	4701144	rs4959312	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	6p25.1	NR	rs4959312-?	NR	2E-7				Affymetrix [NR]	N
620	chr6	4717765	4717766	rs34096281	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	6p25.1	CDYL	rs34096281-T	0.094172	6E-14		0.028404284	[0.021-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
620	chr6	4717872	4717873	rs12196896	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	6p25.1		rs12196896-?	NR	4E-18				NR [~ 8900000] (imputed)	N
621	chr6	4724962	4724963	rs566962634	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	6p25.1	NR	rs566962634-?	NR	2E-6		1.22394	[0.72-1.73] unit increase	NR [13958389] (imputed)	N
621	chr6	4753145	4753146	rs1581140	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Bacillus AY abundance in stool	5,959 Finnish ancestry individuals	NA	6p25.1		rs1581140-A	0.0581058	3E-8		0.061068	[0.04-0.083] unit decrease	Illumina [7980478] (imputed)	N
621	chr6	4790534	4790535	rs761567588	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	6p25.1	CDYL	rs761567588-A	0.9932	4E-7		0.8802	[0.54-1.22] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
621	chr6	4790534	4790535	rs761567588	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	6p25.1	CDYL	rs761567588-A	0.9927	5E-8		0.9437	[0.6-1.28] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
622	chr6	4874758	4874759	rs73717741	21685187	Siedlinski M	2011-06-16	Thorax	Genome-wide association study of smoking behaviours in patients with COPD.	Age at smoking initiation in chronic obstructive pulmonary disease	3,397 European ancestry cases	NA	6p25.1	CDYL	rs73717741-C	0.93	3E-7		0.084	unit increase	Illumina [~ 6300000] (imputed)	N
622	chr6	4905274	4905275	rs79774606	29356057	Du Z	2018-01-21	Prostate	Genetic risk of prostate cancer in Ugandan men.	Prostate cancer	560 Ugandan ancestry cases, 480 Ugandan ancestry controls	NA	6p25.1	NR	rs79774606-G	0.81	9E-6		1.93	[1.44-2.57]	Illumina [17125421] (imputed)	N
622	chr6	4958174	4958175	rs795816	30767168	Shin JH	2019-02-14	Genes Genomics	Genetic risk score combining six genetic variants associated with the cellular NRF2 expression levels correlates with Type 2 diabetes in the human population.	Cellular nuclear factor (erythroid-derived 2)-like 2 levels	74 East Asian ancestry lymphoblastoid cell lines	NA	6p25.1	CDYL	rs795816-G	0.97	7E-7		1.93	NR unit decrease	Affymetrix [352228] (imputed)	N
622	chr6	4979955	4979956	rs1246946	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Squamous cell carcinoma	9,674 European ancestry cases, 625,657 European ancestry controls	NA	6p25.1	RP11-428J1.2	rs1246946-C	0.597875	2E-14		1.1111112	[1.08-1.15]	Affymetrix, Illumina [up to 9061544] (imputed)	N
622	chr6	4979955	4979956	rs1246946	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Keratinocyte cancer (MTAG)	at least 18,538 European ancestry cases, at least 340,302 European ancestry controls	NA	6p25.1	RP11-428J1.2	rs1246946-C	0.591951	5E-15		1.0638298	[1.05-1.09]	Affymetrix [7600000] (imputed)	N
622	chr6	4979955	4979956	rs1246946	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Basal cell carcinoma	31,787 European ancestry cases, 619,351 European ancestry controls	NA	6p25.1	RP11-428J1.2	rs1246946-C	0.597875	5E-26		1.0869565	[1.08-1.11]	Affymetrix, Illumina [up to 9061544] (imputed)	N
623	chr6	5013340	5013341	rs2764106	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	6p25.1	NR	rs2764106-?	NR	3E-6				Affymetrix [NR]	N
623	chr6	5095628	5095629	rs200848	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	6p25.1		rs200848-C	0.501083	3E-12		0.01552164	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
623	chr6	5109118	5109119	rs393628	31170924	Kong S	2019-06-06	BMC Med Genet	Identification of female-specific genetic variants for metabolic syndrome and its component traits to improve the prediction of metabolic syndrome in females.	Systolic blood pressure	4,659 Korean ancestry females	5,273 Korean ancestry females	6p25.1	LYRM4	rs393628-T	0.08903	8E-6		1.973	[1.11-2.84] unit increase	Affymetrix [NR] (imputed)	N
624	chr6	5137701	5137702	rs466837	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	6p25.1		rs466837-?	NR	9E-23				NR [~ 8900000] (imputed)	N
624	chr6	5140855	5140856	rs75995699	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-13 levels	3,557 Finnish ancestry individuals	NA	6p25.1	NR	rs75995699-G		3E-6		0.3319	[0.2-0.47] SD units decrease	NR [10700000] (imputed)	N
625	chr6	5260693	5260694	rs111557465	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	6p25.1	LYRM4	rs111557465-T	0.0916709999999999	3E-17		0.03245673	[0.025-0.04] unit decrease	Affymetrix [93095623] (imputed)	N
625	chr6	5260693	5260694	rs111557465	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p25.1	NR	rs111557465-C	0.912478	2E-22				Affymetrix, Illumina [22063850] (imputed)	N
625	chr6	5260693	5260694	rs111557465	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	6p25.1	NR	rs111557465-C	0.90922	3E-25		0.034263	[0.028-0.041] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
625	chr6	5260935	5260936	rs2224391	21998595	N'Diaye A	2011-10-06	PLoS Genet	Identification, replication, and fine-mapping of Loci associated with adult height in individuals of african ancestry.	Height	20,427 African ancestry individuals	Up to 16,436 African American individuals	6p25.1	LYRM4	rs2224391-A	0.23	3E-6		0.049	[0.029-0.069] unit increase	Affymetrix, Illumina [3310998] (imputed)	N
625	chr6	5262711	5262712	rs6906241	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	6p25.1		rs6906241-?	NR	4E-9				NR [~ 8900000] (imputed)	N
625	chr6	5276594	5276595	rs59548069	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	6p25.1		rs59548069-G	NR	3E-8		0.0143	[0.0092-0.0194] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
625	chr6	5337595	5337596	rs74867963	33831438	Williams JE	2021-04-05	Genomics	Key genetic variants associated with variation of milk oligosaccharides from diverse human populations.	Human milk oligosaccharide concentration (lacto-N-fucopentaose III) in secretors	305 European, Sub-Saharan African, Hispanic or unknown ancestry individuals	NA	6p25.1		rs74867963-?	NR	5E-10				Illumina [1128286]	N
626	chr6	5377479	5377480	rs6940679	28322283	Chibnik LB	2017-03-21	Mol Psychiatry	Susceptibility to neurofibrillary tangles: role of the PTPRD locus and limited pleiotropy with other neuropathologies.	Dementia with Lewy bodies	195 European ancestry cases, 714 European ancestry controls	369 individuals	6p25.1		rs6940679-C	0.62	3E-6	(EA)			Affymetrix, Illumina [NR] (imputed)	N
626	chr6	5457495	5457496	rs73719611	35131881	Testori A	2022-02-07	Cancer Epidemiol Biomarkers Prev	Genetic analysis in African American children supports ancestry specific neuroblastoma susceptibility.	Neuroblastoma	629 African American cases, 2,990 African American controls	NA	6p25.1		rs73719611-C	NR	4E-6		0.4427	unit increase	Illumina [8524982] (imputed)	N
626	chr6	5457495	5457496	rs73719611	35131881	Testori A	2022-02-07	Cancer Epidemiol Biomarkers Prev	Genetic analysis in African American children supports ancestry specific neuroblastoma susceptibility.	Neuroblastoma	254 African American cases, 2,990 African American controls	NA	6p25.1		rs73719611-C	NR	6E-6		0.5522	unit increase	Illumina [NR] (imputed)	N
626	chr6	5475484	5475485	rs433295	27001270	Vishal M	2016-03-22	BMC Med Genomics	Genetic association and stress mediated down-regulation in trabecular meshwork implicates MPP7 as a novel candidate gene in primary open angle glaucoma.	Glaucoma (primary open-angle)	347 Indian ancestry cases, 354 Indian ancestry controls	319 Indian ancestry cases, 297 Indian ancestry controls	6p25.1	Intergenic	rs433295-?		9E-7				Illumina [521873]	N
626	chr6	5478792	5478793	rs200214	27958378	Floyd JS	2016-12-13	Pharmacogenomics J	Large-scale pharmacogenomic study of sulfonylureas and the QT, JT and QRS intervals: CHARGE Pharmacogenomics Working Group.	JT interval (sulfonylurea treatment interaction)	2,095 European ancestry exposed individuals, 42,907 European ancestry unexposed individuals, 1,167 African American exposed individuals, 10,564 African American unexposed individuals, 794 Hispanic/Latino American exposed individuals, 14,330 Hispanic/Latino American unexposed individuals	NA	6p25.1	FARS2	rs200214-?	NR	4E-7		3.6	[2.23-4.97] ms decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
627	chr6	5589638	5589639	rs7751224	31557306	Wang RS	2019-09-26	Clin Pharmacol Ther	Pharmacogenomics and Placebo Response in a Randomized Clinical Trial in Asthma.	Subjective response to placebo treatment in childhood asthma (change in cough/wheeze)	250 European ancestry children	NA	6p25.1	FARS2	rs7751224-C	0.22	8E-6		1.03	NR unit increase	Illumina [NR] (imputed)	N
627	chr6	5600437	5600438	rs9328321	23563609	Wheeler E	2013-04-07	Nat Genet	Genome-wide SNP and CNV analysis identifies common and low-frequency variants associated with severe early-onset obesity.	Obesity (early onset extreme)	1,509 European ancestry cases, 5,380 European ancestry controls	971 European ancestry cases, 1,990 European ancestry controls	6p25.1	FARS2	rs9328321-A	0.21	5E-7		1.22	[1.13-1.32]	Affymetrix [~ 2000000] (imputed)	N
628	chr6	5656035	5656036	rs755219201	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p25.1	FARS2	rs755219201-A	0.0013	7E-6		1.5167	[0.86-2.18] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
629	chr6	5849175	5849176	rs72825715	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Klebsiella abundance in stool	5,959 Finnish ancestry individuals	NA	6p25.1		rs72825715-A	0.0212658	5E-9		0.2111	[0.14-0.28] unit increase	Illumina [7980478] (imputed)	N
629	chr6	5851345	5851346	rs185882222	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p25.1	NR	rs185882222-C	0.0122	8E-9	(EMILIN2)	0.1423	NR unit increase	Illumina [1671387] (imputed)	N
629	chr6	5877434	5877435	rs182645021	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Hippocampal volume in Alzheimer's disease dementia	190 European ancestry Alzheimer's disease dementia cases	NA	6p25.1	RPL34P16, NRN1	rs182645021-C	0.01	5E-7		2.69	[1.69-3.69] unit increase	Illumina [8437147] (imputed)	N
629	chr6	5884751	5884752	rs10484318	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6p25.1	FARS2	rs10484318-?	NR	4E-6	(indoxyl sulfate)	0.25686303	[0.15-0.37] unit increase	Affymetrix [at least 2500000] (imputed)	N
630	chr6	5979068	5979069	rs9378999	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	6p25.1		rs9378999-?	NR	2E-9				NR [~ 8900000] (imputed)	N
630	chr6	5993051	5993052	rs74678706	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Ischemic stroke (cardioembolic)	174 Indian ancestry cases, 2,154 Indian ancestry controls	NA	6p25.1		rs74678706-?	NR	4E-7		1.0907145	[1.05469114676106-1.12796814338885]	Illumina [up to 7827597] (imputed)	N
631	chr6	6065759	6065760	rs4960162	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	6p25.1	NRN1, F13A1, PKMP5, MIR5683	rs4960162-T	NR	7E-6	(sleep duration, weekdays)	0.2067	[0.12-0.3] unit decrease	Affymetrix [7141204] (imputed)	N
631	chr6	6069587	6069588	rs112603734	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6p25.1		rs112603734-A	0.7699	3E-9		0.0131	[0.0088-0.0174] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
631	chr6	6126844	6126845	rs13201744	22205395	Tekola Ayele F	2011-12-29	Immunogenetics	Genome-wide associated loci influencing interleukin (IL)-10, IL-1Ra, and IL-6 levels in African Americans.	Interleukin-10 levels	704 African American individuals	425 West African individuals	6p25.1	F13A1	rs13201744-A	0.18	7E-8	(AA)	0.05	unit decrease	Affymetrix [5396780] (imputed)	N
631	chr6	6141257	6141258	rs148586547	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	6p25.1	NR	rs148586547-?	NR	1E-8				Illumina [7760689] (imputed)	N
632	chr6	6161108	6161109	rs6927469	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6p25.1	NRN1	rs6927469-?	NR	3E-6	(creatinine)	0.1935785	[0.11-0.27] unit decrease	Affymetrix [at least 2500000] (imputed)	N
632	chr6	6164207	6164208	rs4416719	32308125	Wolking S	2020-04-20	Pharmacogenomics	Pharmacoresponse in genetic generalized epilepsy: a genome-wide association study.	Response to lamotrigine and valproic acid in genetic generalized epilepsy	31 European ancestry responders, 73 European ancestry non-responders	NA	6p25.1	F13A1	rs4416719-?	NR	2E-6				Affymetrix, Illumina [at least 3287443] (imputed)	N
632	chr6	6169889	6169890	rs6934608	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Antibody status in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	6p25.1	NR	rs6934608-?	NR	1E-6				Affymetrix [5486770] (imputed)	N
632	chr6	6174865	6174866	rs5982	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FRS2	5,344 Icelandic ancestry individuals	NA	6p25.1		rs5982-A	0.1901	2E-16		0.178984	[0.14-0.22] unit decrease	Illumina [7506463] (imputed)	N
632	chr6	6197487	6197488	rs76451285	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Coronary artery disease in dyslipidemia	768 Korean ancestry cases, 19,999 Korean ancestry controls	NA	6p25.1		rs76451285-A	0.03507	8E-6		1.669	[1.333-2.09]	Affymetrix [7975321] (imputed)	N
632	chr6	6249066	6249067	rs2295752	30954325	Kamboh MI	2019-03-11	Neurobiol Aging	Population-based genome-wide association study of cognitive decline in older adults free of dementia: identification of a novel locus for the attention domain.	Age-related cognitive decline (memory) (slope of z-scores)	1,145 European ancestry individuals	NA	6p25.1	F13A1	rs2295752-A	0.23	4E-6		0.23	unit decrease	Illumina [5600000] (imputed)	N
632	chr6	6276428	6276429	rs4960182	33713768	Akenroye AT	2021-03-10	J Allergy Clin Immunol	Genome-wide Association study of Asthma, Total IgE, and Lung function in a Cohort of Peruvian Children.	Asthma (childhood onset)	436 Peruvian cases, 291 Peruvian controls	NA	6p25.1		rs4960182-?	NR	1E-6		1.7559325	unit increase	Illumina [NR] (imputed)	N
632	chr6	6283665	6283666	rs749005	21116278	Furney SJ	2010-11-30	Mol Psychiatry	Genome-wide association with MRI atrophy measures as a quantitative trait locus for Alzheimer's disease.	Entorhinal cortical volume	424 European ancestry mild cognitive impairment cases, 236 European ancestry Alzheimer's disease cases, 279 European ancestry controls	NA	6p25.1	F13A1	rs749005-?	NR	3E-7		2.0E-4	[NR] unit decrease	Illumina [478011]	N
633	chr6	6313383	6313384	rs1475073	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Neuroticism	170,911 European ancestry individuals	NA	6p25.1	NR	rs1475073-A	0.573	4E-6		0.016281787	[0.0093-0.0232] unit decrease	Affymetrix [up to 6544775] (imputed)	N
633	chr6	6316312	6316313	rs6927354	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	6p25.1	Intergenic	rs6927354-T	NR	5E-8	(between families)	5.44	unit decrease	Affymetrix [up to 15107142] (imputed)	N
633	chr6	6318125	6318126	rs3024321	23381943	Williams FM	2013-01-01	Ann Neurol	Ischemic stroke is associated with the ABO locus: the EuroCLOT study.	End-stage coagulation	2,100 European ancestry individuals	NA	6p25.1	F13A1	rs3024321-A	0.679	8E-142	(FXIII activity)	0.891	[0.82-0.96] unit decrease	Illumina [NR] (imputed)	N
633	chr6	6318794	6318795	rs5985	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SERPINF2	5,336 Icelandic ancestry individuals	NA	6p25.1		rs5985-A	0.2415	5E-17		0.149748	[0.11-0.18] unit decrease	Illumina [7506463] (imputed)	N
633	chr6	6318794	6318795	rs5985	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FRS2	5,344 Icelandic ancestry individuals	NA	6p25.1		rs5985-A	0.2415	4E-15		0.156633	[0.12-0.2] unit decrease	Illumina [7506463] (imputed)	N
633	chr6	6318794	6318795	rs5985	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FN1	5,339 Icelandic ancestry individuals	NA	6p25.1		rs5985-A	0.2415	7E-13		0.147716	[0.11-0.19] unit decrease	Illumina [7506463] (imputed)	N
633	chr6	6318794	6318795	rs5985	23381943	Williams FM	2013-01-01	Ann Neurol	Ischemic stroke is associated with the ABO locus: the EuroCLOT study.	End-stage coagulation	2,100 European ancestry individuals	NA	6p25.1	F13A1	rs5985-C	0.741	3E-186	(FXIII activity)	1.077	[1-1.15] unit decrease	Illumina [NR] (imputed)	N
633	chr6	6326041	6326042	rs9502434	32180562	Kulyte A	2020-01-25	Mol Metab	Genome-wide association study of adipocyte lipolysis in the GENetics of adipocyte lipolysis (GENiAL) cohort.	Spontaneous adipocyte lipolysis	856 European ancestry individuals	NA	6p25.1	NR	rs9502434-G	0.960158	7E-6		0.194	[0.11-0.28] unit increase	NR [9260588] (imputed)	N
633	chr6	6331872	6331873	rs927332	29093273	Almgren P	2017-11-02	JCI Insight	Genetic determinants of circulating GIP and GLP-1 concentrations.	GIP levels in response to oral glucose tolerance test (120 minutes)	3,344 Swedish ancestry individuals	4,905 Finnish ancestry individuals	6p25.1	F13A1	rs927332-T	0.55	4E-8		0.04	[0.026-0.054] unit increase	Illumina [at least 81396]	N
633	chr6	6331935	6331936	rs1318606	23381943	Williams FM	2013-01-01	Ann Neurol	Ischemic stroke is associated with the ABO locus: the EuroCLOT study.	End-stage coagulation	2,100 European ancestry individuals	NA	6p25.1	F13A1	rs1318606-T	0.569	4E-17	(FXIIIA)	0.273	[0.21-0.34] unit decrease	Illumina [NR] (imputed)	N
633	chr6	6333083	6333084	rs12204494	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FN1	5,356 Icelandic ancestry individuals	NA	6p25.1		rs12204494-G	0.3952	3E-18		0.168849	[0.13-0.21] unit increase	Illumina [7506463] (imputed)	N
633	chr6	6333083	6333084	rs12204494	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein F13B	5,330 Icelandic ancestry individuals	NA	6p25.1		rs12204494-G	0.3952	2E-22		0.151882	[0.12-0.18] unit increase	Illumina [7506463] (imputed)	N
633	chr6	6337505	6337506	rs11243081	23381943	Williams FM	2013-01-01	Ann Neurol	Ischemic stroke is associated with the ABO locus: the EuroCLOT study.	End-stage coagulation	2,100 European ancestry individuals	NA	6p25.1	F13A1	rs11243081-C	0.676	5E-18	(FXIIIA)	0.299	[0.23-0.37] unit decrease	Illumina [NR] (imputed)	N
633	chr6	6341286	6341287	rs17142067	23381943	Williams FM	2013-01-01	Ann Neurol	Ischemic stroke is associated with the ABO locus: the EuroCLOT study.	End-stage coagulation	2,100 European ancestry individuals	NA	6p25.1	F13A1	rs17142067-A	0.67	1E-17	(FXIIIA)	0.299	[0.23-0.37] unit decrease	Illumina [NR] (imputed)	N
633	chr6	6356481	6356482	rs13198304	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	6p25.1	NR	rs13198304-?	NR	2E-16				Affymetrix [NR]	N
633	chr6	6391372	6391373	rs6940363	35131881	Testori A	2022-02-07	Cancer Epidemiol Biomarkers Prev	Genetic analysis in African American children supports ancestry specific neuroblastoma susceptibility.	Neuroblastoma	254 African American cases, 2,990 African American controls	NA	6p25.1		rs6940363-G	NR	3E-6		0.9206	unit increase	Illumina [NR] (imputed)	N
633	chr6	6393063	6393064	rs2326766	33692830	Indencleef K	2021-02-22	Front Genet	The Intersection of the Genetic Architectures of Orofacial Clefts and Normal Facial Variation.	Facial morphology traits (59 NSCL/P endophenotypic segments)	8,246 European ancestry individuals	NA	6p25.1	NR	rs2326766-?	NR	2E-9	(Quadrant I (Philtrum), Segment 37)	0.027209422	NR unit increase	NR [7417619] (imputed)	N
633	chr6	6405630	6405631	rs9392780	28108127	Eitel I	2017-01-15	Int J Cardiol	Genome-wide association study in takotsubo syndrome - Preliminary results and future directions.	Takotsubo syndrome	96 European ancestry cases, 475 controls	NA	6p25.1	NR	rs9392780-G	0.06	5E-6		3.19	NR	NR [at least 498281] (imputed)	N
634	chr6	6476277	6476278	rs945144	25317112	Oh S	2014-09-30	Genomics Inform	Epidemiological and genome-wide association study of gastritis or gastric ulcer in korean populations.	Gastritis	977 Korean ancestry female cases, 3,622 Korean ancestry female controls, 804 Korean ancestry male cases, 3,335 Korean ancestry male controls	NA	6p25.1	LY86-AS1	rs945144-?	NR	9E-6	(Females)	1.2627857	[NR]	NR [349184]	N
634	chr6	6550748	6550749	rs17142289	24785509	Barnett GC	2014-04-28	Radiother Oncol	A genome wide association study (GWAS) providing evidence of an association between common genetic variants and late radiotherapy toxicity.	Response to radiotherapy in cancer (late toxicity)	579 European ancestry prostate cancer cases, 1,194 European ancestry breast cancer cases	516 European ancestry prostate cancer cases, 862 prostate cancer cases, 355 breast cancer cases	6p25.1	LY86-AS1	rs17142289-?	0.02	4E-6	(Breast cancer, overall toxicity, univariable analysis)	0.35	[NR] unit increase	Illumina [2417493] (imputed)	N
634	chr6	6552993	6552994	rs594074	26305897	Iyengar SK	2015-08-25	PLoS Genet	Genome-Wide Association and Trans-ethnic Meta-Analysis for Advanced Diabetic Kidney Disease: Family Investigation of Nephropathy and Diabetes (FIND).	Diabetic kidney disease	up to 1,564 African American cases, 369  African American diabetic controls, 1,288 African American non-diabetic controls, 538 American Indian ancestry cases, 319 American Indian ancestry diabetic controls, 342 European ancestry cases, 404 European ancestry diabetic controls, 779 Mexican ancestry cases, 594 Mexican ancestry diabetic controls	NA	6p25.1	NR	rs594074-?	NR	5E-6	(dominant)	1.4084507	[1.22-1.64]	Affymetrix [NR]	N
635	chr6	6593048	6593049	rs4246076	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in overweight individuals	up to 10,058 European ancestry male individuals, up to 7,189 European ancestry female individuals	NA	6p25.1	LY86	rs4246076-G	0.59	6E-6		0.051	[0.029-0.073] kg/m2 increase	Affymetrix, Illumina [at least 188473] (imputed)	N
635	chr6	6593694	6593695	rs9502478	28060188	Hamet P	2017-01-16	J Hypertens	PROX1 gene CC genotype as a major determinant of early onset of type 2 diabetes in slavic study participants from Action in Diabetes and Vascular Disease: Preterax and Diamicron MR Controlled Evaluation study.	Type 2 diabetes (age of onset)	2,307 Celtic ancestry individuals, 1,102 Slavic ancestry individuals	NA	6p25.1	LY86-AS1, F13A1	rs9502478-?	NR	4E-6	(Celtic)			Affymetrix [5045527] (imputed)	N
635	chr6	6612466	6612467	rs2326810	20038947	Shyn SI	2009-12-29	Mol Psychiatry	Novel loci for major depression identified by genome-wide association study of Sequenced Treatment Alternatives to Relieve Depression and meta-analysis of three studies.	Major depressive disorder (broad)	3,957 European ancestry cases, 3,428 European ancestry controls	NA	6p25.1	LY86	rs2326810-G	0.92	7E-6		1.41	[NR]	Affymetrix, Perlegen [2391203] (imputed)	N
635	chr6	6615828	6615829	rs147462252	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Endometrial cancer (MTAG)	909 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p25.1	Intergenic	rs147462252-?		8E-8		1.12	[1.07-1.16]	Illumina [7645193] (imputed)	N
635	chr6	6615828	6615829	rs147462252	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Endometrial cancer	909 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p25.1	Intergenic	rs147462252-?		9E-8		2.17	[1.63-2.88]	Illumina [7645193] (imputed)	N
635	chr6	6621765	6621766	rs77364437	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		LY86-AS1	rs77364437-?	NR	6E-9	(female)	0.610067	[NR] unit increase	Affymetrix [NR] (imputed)	N
635	chr6	6625703	6625704	rs3804476	28203683	Heit JA	2017-02-16	Thromb Haemost	Identification of unique venous thromboembolism-susceptibility variants in African-Americans.	Venous thromboembolism adjusted for sickle cell variant rs77121243-T	393 African American cases, 4,941 African American controls.	NR	6p25.1	LY86	rs3804476-G	0.1313	2E-8		1.827	[1.481-2.256]	Affymetrix, Illumina [14074516] (imputed)	N
635	chr6	6631995	6631996	rs11963955	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6p25.1	NR	rs11963955-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
635	chr6	6637860	6637861	rs3804485	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p25.1	LY86	rs3804485-A	NR	8E-9		0.0174234	[0.012-0.023] unit decrease	Affymetrix [321016] (imputed)	N
635	chr6	6637860	6637861	rs3804485	31134134	Hollister BM	2019-05-10	Front Genet	A Social Determinant of Health May Modify Genetic Associations for Blood Pressure: Evidence From a SNP by Education Interaction in an African American Population.	Systolic blood pressure (education interaction)	1,518 African American individuals with high school education, 731 African American individuals with college education, 328 African American individuals with less than high school education	NA	6p25.1	LY86	rs3804485-?	0.41	5E-6		1.51	[0.86-2.16] mmHg increase	Illumina [115834]	N
635	chr6	6637860	6637861	rs3804485	31134134	Hollister BM	2019-05-10	Front Genet	A Social Determinant of Health May Modify Genetic Associations for Blood Pressure: Evidence From a SNP by Education Interaction in an African American Population.	Systolic blood pressure	2,577 African American Individuals	NA	6p25.1	LY86	rs3804485-?	0.41	7E-6		1.48	mmHg increase	Illumina [115834]	N
635	chr6	6670172	6670173	rs201022	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Alanine aminotransferase levels in excessive alcohol consumption	951 individuals	NA	6p25.1	NR	rs201022-?	NR	6E-7		0.0193	[0.012-0.027] unit decrease	Illumina [~ 7800000] (imputed)	N
635	chr6	6680172	6680172	rs111373852	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	6p25.1	RP1-80N2.3	rs111373852-CAGTT	0.475245	2E-17		0.019329224	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
635	chr6	6680172	6680172	rs111373852	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	6p25.1	RP1-80N2.3	rs111373852-CAGTT	0.4744	2E-9		0.02188454	[0.015-0.029] unit increase	Affymetrix [~ 2500000] (imputed)	N
635	chr6	6680172	6680172	rs111373852	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	6p25.1	RP1-80N2.3	rs111373852-CAGTT	0.4744	2E-10		0.02343567	[0.016-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
635	chr6	6680172	6680172	rs111373852	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	6p25.1	RP1-80N2.3	rs111373852-CAGTT	0.4744	1E-9		0.02232604	[0.015-0.03] unit increase	Affymetrix [~ 2500000] (imputed)	N
635	chr6	6682661	6682662	rs9392827	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	6p25.1	RP1-80N2.3	rs9392827-C	0.475522	1E-17		0.019222895	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
635	chr6	6682661	6682662	rs9392827	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6p25.1	RP1-80N2.3	rs9392827-C	0.475529	4E-16		0.01832054	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
635	chr6	6682661	6682662	rs9392827	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	6p25.1	RP1-80N2.3	rs9392827-C	0.475565	2E-22		0.02176667	[0.017-0.026] unit increase	Affymetrix [93095623] (imputed)	N
635	chr6	6682661	6682662	rs9392827	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6p25.1	RP1-80N2.3	rs9392827-C	0.475576	1E-21		0.021412928	[0.017-0.026] unit increase	Affymetrix [93095623] (imputed)	N
636	chr6	6685801	6685802	rs201031	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p25.1	RP1-80N2.3	rs201031-G	NR	2E-8		0.0163641	[0.011-0.022] unit decrease	Affymetrix [321016] (imputed)	N
636	chr6	6703515	6703516	rs12207082	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p25.1	NR	rs12207082-A	0.240852	2E-13				Affymetrix, Illumina [24246363] (imputed)	N
636	chr6	6706845	6706846	rs67285987	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	6p25.1	RP1-80N2.2	rs67285987-T	0.142927	2E-21		0.02991899	[0.024-0.036] unit increase	Affymetrix [93095623] (imputed)	N
636	chr6	6706845	6706846	rs67285987	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	6p25.1	RP1-80N2.2	rs67285987-T	0.14301	7E-11		0.0170258	[0.011-0.023] unit increase	Affymetrix [93095623] (imputed)	N
636	chr6	6706845	6706846	rs67285987	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	6p25.1		rs67285987-?	NR	4E-8				NR [~ 8900000] (imputed)	N
636	chr6	6708847	6708848	rs9405968	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	6p25.1	RP1-80N2.2	rs9405968-A	0.296692	2E-13		0.01807794	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
636	chr6	6722956	6722957	rs112881630	26545240	Giri A	2015-11-06	PLoS One	Genetic Determinants of Pelvic Organ Prolapse among African American and Hispanic Women in the Women's Health Initiative.	Pelvic organ prolapse (moderate/severe)	154 African American cases, 948 African American controls, 163 Hispanic cases, 305 Hispanic controls	NA	6p25.1	LOC101928047	rs112881630-G	0.14	3E-6		2.19		Affymetrix [at least 730985] (imputed)	N
636	chr6	6727362	6727363	rs1294448	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p25.1	RP1-80N2.2	rs1294448-C	NR	2E-15		0.0224319	[0.017-0.028] unit increase	Affymetrix [319769] (imputed)	N
636	chr6	6727362	6727363	rs1294448	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p25.1	RP1-80N2.2	rs1294448-C	NR	5E-15		0.0221493	[0.017-0.028] unit increase	Affymetrix [319769] (imputed)	N
636	chr6	6727362	6727363	rs1294448	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	6p25.1	RP1-80N2.2	rs1294448-C	NR	3E-13		0.0214116	[0.016-0.027] unit decrease	Affymetrix [321788] (imputed)	N
636	chr6	6727362	6727363	rs1294448	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p25.1	RP1-80N2.2	rs1294448-C	NR	5E-17		0.0236796	[0.018-0.029] unit decrease	Affymetrix [321016] (imputed)	N
636	chr6	6727362	6727363	rs1294448	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	6p25.1	NR	rs1294448-C	0.5	1E-11		0.013	[0.0092-0.0168] unit decrease	NR [NR]	N
636	chr6	6727362	6727363	rs1294448	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6p25.1	NR	rs1294448-?	NR	4E-20				Affymetrix [~ 8270000] (imputed)	N
636	chr6	6735021	6735022	rs1294404	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	6p25.1	RP3-470L22.1	rs1294404-G	NR	2E-14		0.0251591	[0.019-0.032] unit increase	Affymetrix [323858] (imputed)	N
636	chr6	6735021	6735022	rs1294404	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex x age interaction (4df test)	up to 43,776 European ancestry men aged <50, up to 50,526 European ancestry women aged <50, up to 69,944 European ancestry men aged >50, up to 88,129 European ancestry women aged >50	NA	6p25.1	LY86, LY86-AS1, F13A1, RREB1	rs1294404-A	0.6114	4E-14				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
636	chr6	6735021	6735022	rs1294404	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI (age >50)	up to 69,944 European ancestry men, up to 88,129 European ancestry women	NA	6p25.1	LY86, LY86-AS1, F13A1, RREB1	rs1294404-A	0.611391761818064	2E-9	(women)	0.035	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
636	chr6	6735021	6735022	rs1294404	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI (age <50)	up to 43,776 European ancestry men, up to 50,526 European ancestry women	NA	6p25.1	LY86-AS1, F13A1, LY86, RREB1	rs1294404-A	0.61	3E-6	(women)	0.034	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
636	chr6	6735021	6735022	rs1294404	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	6p25.1	LY86, LY86-AS1, F13A1, RREB1	rs1294404-A	0.6114	9E-15		0.035	units increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
636	chr6	6736196	6736197	rs912056	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p25.1	RP3-470L22.1	rs912056-A	NR	1E-32		0.0345745	[0.029-0.04] unit increase	Affymetrix [321016] (imputed)	N
636	chr6	6736196	6736197	rs912056	27918534	Chu AY	2016-12-05	Nat Genet	Multiethnic genome-wide meta-analysis of ectopic fat depots identifies loci associated with adipocyte development and differentiation.	Visceral adipose tissue/subcutaneous adipose tissue ratio adjusted for BMI	7,618 European ancestry women, 7,050 European ancestry men, 2,205 African American women, 1,324 African American men.	NA	6p25.1	LY86	rs912056-A	0.35	2E-9		5.98	z-score decrease	Affymetrix, Illumina [~ 2600000] (imputed)	N
636	chr6	6736196	6736197	rs912056	27918534	Chu AY	2016-12-05	Nat Genet	Multiethnic genome-wide meta-analysis of ectopic fat depots identifies loci associated with adipocyte development and differentiation.	Visceral adipose tissue/subcutaneous adipose tissue ratio	7,618 European ancestry women,  7,050 European ancestry men, 2,205 African American women, 1,324 African American men.	NA	6p25.1	LY86	rs912056-A	0.35	3E-9		5.96	z-score decrease	Affymetrix, Illumina [~ 2600000] (imputed)	N
636	chr6	6736930	6736931	rs912057	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p25.1	LY86	rs912057-G	0.6256999999999999	5E-9	(EA, women)	0.0308	[0.02-0.041] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
636	chr6	6736930	6736931	rs912057	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p25.1	LY86	rs912057-G	0.6256999999999999	3E-10	(women)	0.0315	[0.022-0.041] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
636	chr6	6736930	6736931	rs912057	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p25.1	LY86	rs912057-G	0.6256999999999999	1E-13	(EA)	0.03	[0.022-0.038] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
636	chr6	6736930	6736931	rs912057	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6p25.1	LY86	rs912057-G	0.6265000000000001	2E-7	(women)	0.031	[0.019-0.043] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
636	chr6	6736930	6736931	rs912057	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6p25.1	LY86	rs912057-G	0.6265000000000001	2E-7	(women)	0.031	[0.019-0.043] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
636	chr6	6736930	6736931	rs912057	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6p25.1	LY86	rs912057-G	0.6265000000000001	2E-7	(EA, women)	0.031	[0.019-0.043] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
636	chr6	6736930	6736931	rs912057	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6p25.1	LY86	rs912057-G	0.6256999999999999	3E-11	(EA)	0.0308	[0.022-0.04] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
636	chr6	6736930	6736931	rs912057	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6p25.1	LY86	rs912057-G	0.6256999999999999	3E-11		0.0308	[0.022-0.04] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
636	chr6	6736930	6736931	rs912057	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6p25.1	LY86	rs912057-G	0.6244000000000001	1E-6	(men)	0.0332	[0.02-0.047] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
636	chr6	6736930	6736931	rs912057	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6p25.1	LY86	rs912057-G	0.6244000000000001	1E-6	(EA, men)	0.0332	[0.02-0.047] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
636	chr6	6736930	6736931	rs912057	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p25.1	LY86	rs912057-?	0.6256999999999999	4E-6	(men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
636	chr6	6736930	6736931	rs912057	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p25.1	LY86	rs912057-?	0.6256999999999999	4E-6	(EA, men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
636	chr6	6736930	6736931	rs912057	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p25.1	LY86	rs912057-?	0.6256999999999999	1E-12	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
636	chr6	6736930	6736931	rs912057	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p25.1	LY86	rs912057-?	0.6256999999999999	1E-12				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
636	chr6	6737590	6737591	rs1294405	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	6p25.1	RP3-470L22.1	rs1294405-G	NR	4E-22		0.0285471	[0.023-0.034] unit decrease	Affymetrix [321788] (imputed)	N
636	chr6	6737590	6737591	rs1294405	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p25.1	RP3-470L22.1	rs1294405-G	NR	2E-15		0.0225522	[0.017-0.028] unit decrease	Affymetrix [321016] (imputed)	N
636	chr6	6738102	6738103	rs1294407	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	6p25.1	RP3-470L22.1	rs1294407-C	NR	2E-37		0.0386853	[0.033-0.045] unit increase	Affymetrix [321788] (imputed)	N
636	chr6	6738354	6738355	rs1294409	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p25.1	LY86	rs1294409-T	0.6258	8E-7	(EA, men)	0.0294	[0.018-0.041] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
636	chr6	6738354	6738355	rs1294409	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p25.1	LY86	rs1294409-T	0.6258	4E-8	(men)	0.0309	[0.02-0.042] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
636	chr6	6738354	6738355	rs1294409	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p25.1	LY86	rs1294409-T	0.6258	4E-16		0.0307	[0.023-0.038] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
636	chr6	6738354	6738355	rs1294409	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p25.1	LY86	rs1294409-?	0.6258	6E-9	(women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
636	chr6	6738354	6738355	rs1294409	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p25.1	LY86	rs1294409-?	0.6258	6E-9	(EA, women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
636	chr6	6738354	6738355	rs1294409	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p25.1	LY86	rs1294409-T	0.6288	5E-7	(EA, men)	0.0254	[0.015-0.035] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
636	chr6	6738354	6738355	rs1294409	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p25.1	LY86	rs1294409-T	0.6288	3E-8	(EA)	0.0204	[0.013-0.028] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
636	chr6	6738751	6738752	rs1294410	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Waist-hip ratio	9,140 African American females, 11,555 Hispanic/Latino females, 1,843 Asian ancestry females, 1,715 Native Hawaiian ancestry females, 585 Native American ancestry females	NA	6p25.1	NR	rs1294410-?	NR	1E-6		0.04433865	[0.027-0.062] unit increase	Illumina [30305130] (imputed)	N
636	chr6	6738751	6738752	rs1294410	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Waist-hip ratio	10,286 African American individuals, 16,472 Hispanic/Latino individuals, 3,500 Asian ancestry individuals, 3,061 Native Hawaiian ancestry individuals, 585 Native American ancestry individuals	NA	6p25.1	NR	rs1294410-?	NR	4E-9		0.04714837	[0.031-0.063] unit increase	Illumina [at least 21894105] (imputed)	N
636	chr6	6738751	6738752	rs1294410	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	6p25.1	NR	rs1294410-C	0.62	1E-68		0.031	[0.027-0.035] unit increase	Affymetrix [2446094] (imputed)	N
636	chr6	6738751	6738752	rs1294410	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	6p25.1	NR	rs1294410-C	0.62	5E-8				Affymetrix [2446094] (imputed)	N
636	chr6	6738751	6738752	rs1294410	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	6p25.1	LY86	rs1294410-T	0.3725	7E-11	(women)	0.0306	[0.021-0.04] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
636	chr6	6738751	6738752	rs1294410	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	6p25.1	LY86	rs1294410-T	0.3725	1E-12		0.0256	[0.019-0.033] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
636	chr6	6738751	6738752	rs1294410	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex x age interaction (4df test)	up to 43,776 European ancestry men aged <50, up to 50,526 European ancestry women aged <50, up to 69,944 European ancestry men aged >50, up to 88,129 European ancestry women aged >50	NA	6p25.1	NR	rs1294410-T	0.366834831644638	1E-15				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
636	chr6	6738751	6738752	rs1294410	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	6p25.1	NR	rs1294410-T	0.366834831644638	1E-16		0.027864806	units decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
636	chr6	6738751	6738752	rs1294410	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p25.1	LY86	rs1294410-C	0.6356	6E-16	(women)	0.0369	[0.028-0.046] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
636	chr6	6738751	6738752	rs1294410	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p25.1	LY86	rs1294410-C	0.6334	2E-15	(EA, women)	0.0369	[0.028-0.046] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
636	chr6	6738751	6738752	rs1294410	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p25.1	LY86	rs1294410-C	0.6329	2E-18	(EA)	0.0309	[0.024-0.038] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
636	chr6	6738751	6738752	rs1294410	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p25.1	LY86	rs1294410-C	0.6326	8E-20		0.0315	[0.025-0.038] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
636	chr6	6738751	6738752	rs1294410	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p25.1	LY86	rs1294410-C	0.6325	1E-6	(EA, men)	0.0247	[0.015-0.035] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
636	chr6	6738751	6738752	rs1294410	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p25.1	LY86	rs1294410-C	0.627	3E-7	(men)	0.0255	[0.016-0.035] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
636	chr6	6738751	6738752	rs1294410	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p25.1	LY86	rs1294410-T	0.3669	3E-8	(EA,men)	0.029	[0.019-0.039] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
636	chr6	6738751	6738752	rs1294410	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p25.1	LY86	rs1294410-T	0.3669	2E-15	(EA)	0.0292	[0.022-0.036] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
636	chr6	6738751	6738752	rs1294410	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p25.1	LY86	rs1294410-T	0.3669	2E-10	(EA, women)	0.0296	[0.02-0.039] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
636	chr6	6738751	6738752	rs1294410	23966867	Liu CT	2013-08-15	PLoS Genet	Genome-wide association of body fat distribution in African ancestry populations suggests new loci.	Waist-hip ratio	up to 19,744 African American individuals	Up to 7,606 African American individuals	6p25.1	LY86	rs1294410-T	0.23	1E-6	(BMI_pooled)	0.05	[0.030-0.070] unit decrease	Affymetrix, Illumina [3200000] (imputed)	N
636	chr6	6739033	6739034	rs1294411	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p25.1	RP3-470L22.1	rs1294411-C	NR	2E-9		0.0184135	[0.012-0.024] unit decrease	Affymetrix [323123] (imputed)	N
636	chr6	6739033	6739034	rs1294411	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	6p25.1		rs1294411-?	NR	3E-50				NR [~ 8900000] (imputed)	N
636	chr6	6739853	6739854	rs1294412	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p25.1	RP3-470L22.1	rs1294412-G	NR	2E-25		0.029486	[0.024-0.035] unit increase	Affymetrix [319769] (imputed)	N
636	chr6	6739853	6739854	rs1294412	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p25.1	RP3-470L22.1	rs1294412-G	NR	2E-25		0.0294587	[0.024-0.035] unit increase	Affymetrix [319769] (imputed)	N
636	chr6	6739853	6739854	rs1294412	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	6p25.1	RP3-470L22.1	rs1294412-G	NR	8E-11		0.0209136	[0.015-0.027] unit decrease	Affymetrix [323858] (imputed)	N
636	chr6	6739853	6739854	rs1294412	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p25.1	RP3-470L22.1	rs1294412-G	NR	5E-9		0.0167486	[0.011-0.022] unit increase	Affymetrix [321169] (imputed)	N
636	chr6	6739923	6739924	rs1294413	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p25.1	RP3-470L22.1	rs1294413-A	NR	7E-10		0.0176215	[0.012-0.023] unit increase	Affymetrix [321114] (imputed)	N
636	chr6	6740365	6740366	rs1294414	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p25.1	RP3-470L22.1	rs1294414-A	NR	2E-13		0.0215934	[0.016-0.027] unit decrease	Affymetrix [321114] (imputed)	N
636	chr6	6740632	6740633	rs1294415	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p25.1	RP3-470L22.1	rs1294415-G	NR	1E-42		0.0396753	[0.034-0.045] unit decrease	Affymetrix [319769] (imputed)	N
636	chr6	6740632	6740633	rs1294415	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p25.1	RP3-470L22.1	rs1294415-G	NR	2E-42		0.0395418	[0.034-0.045] unit decrease	Affymetrix [319769] (imputed)	N
636	chr6	6740632	6740633	rs1294415	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p25.1	RP3-470L22.1	rs1294415-G	NR	6E-14		0.0236629	[0.017-0.03] unit increase	Affymetrix [323123] (imputed)	N
636	chr6	6740632	6740633	rs1294415	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p25.1	RP3-470L22.1	rs1294415-G	NR	1E-14		0.0225652	[0.017-0.028] unit decrease	Affymetrix [321169] (imputed)	N
636	chr6	6741931	6741932	rs1294417	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	6p25.1	LY86	rs1294417-T	0.4577	1E-6		0.0122	[0.0073-0.0171] unit decrease	Affymetrix [19819130] (imputed)	N
636	chr6	6741931	6741932	rs1294417	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	6p25.1	LY86	rs1294417-T	0.4577	4E-39		0.0311	[0.026-0.036] unit decrease	Affymetrix [19819130] (imputed)	N
636	chr6	6742548	6742549	rs1294419	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p25.1	RP3-470L22.1	rs1294419-C	NR	2E-13		0.0234206	[0.017-0.03] unit decrease	Affymetrix [323858] (imputed)	N
636	chr6	6742548	6742549	rs1294419	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p25.1	RP3-470L22.1	rs1294419-C	NR	3E-13		0.0232871	[0.017-0.03] unit decrease	Affymetrix [127266] (imputed)	N
636	chr6	6742548	6742549	rs1294419	33037222	Sieh W	2020-10-09	Nat Commun	Identification of 31 loci for mammographic density phenotypes and their associations with breast cancer risk.	Mammographic density (non-dense area)	24,192 European ancestry individuals	NA	6p25.1		rs1294419-?	NR	8E-10		0.038	[0.026-0.05] unit increase	Affymetrix [9906178] (imputed)	N
636	chr6	6742751	6742752	rs1294420	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	6p25.1	NR	rs1294420-T	0.5365	1E-45		0.0243	[0.021-0.028] unit increase	NR [~ 27400000] (imputed)	N
636	chr6	6743148	6743149	rs1294421	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Inguinal hernia	16,725 European ancestry cases, 428,356 European ancestry controls, 1,664 East Asian ancestry cases, 177,062 East Asian ancestry controls	NA	6p25.1		rs1294421-G	NR	4E-15		0.0923	[0.069-0.115] unit decrease	Affymetrix, Illumina [25841416] (imputed)	N
636	chr6	6743148	6743149	rs1294421	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Waist-hip ratio	9,140 African American females, 11,555 Hispanic/Latino females, 1,843 Asian ancestry females, 1,715 Native Hawaiian ancestry females, 585 Native American ancestry females	NA	6p25.1	NR	rs1294421-?	NR	3E-6		0.04156875	[0.024-0.059] unit increase	Illumina [30305130] (imputed)	N
636	chr6	6743148	6743149	rs1294421	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Waist-hip ratio	10,286 African American individuals, 16,472 Hispanic/Latino individuals, 3,500 Asian ancestry individuals, 3,061 Native Hawaiian ancestry individuals, 585 Native American ancestry individuals	NA	6p25.1	NR	rs1294421-?	NR	1E-8		0.04534542	[0.03-0.061] unit increase	Illumina [at least 21894105] (imputed)	N
636	chr6	6743148	6743149	rs1294421	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	6p25.1	LY86	rs1294421-T	0.39	6E-7	(conditional on rs1334576)	1.05	[NR]	Affymetrix, Illumina [6224355] (imputed)	N
636	chr6	6743148	6743149	rs1294421	30175238	Jackson VE	2018-01-12	Wellcome Open Res	Meta-analysis of exome array data identifies six novel genetic loci for lung function.	Lung function (FEV1/FVC)	60,749 European ancestry individuals, 7,721 African ancestry individuals	111,556 European ancestry individuals	6p25.1	LY86	rs1294421-T	0.36786	1E-22		9.815	unit decrease	Illumina [179215]	N
636	chr6	6743148	6743149	rs1294421	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-hip ratio	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p25.1	LY86	rs1294421-T	0.3801	8E-13	(EA, women)	0.0327	[0.024-0.042] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
636	chr6	6743148	6743149	rs1294421	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-hip ratio	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p25.1	LY86	rs1294421-T	0.3801	7E-14	(EA)	0.0255	[0.019-0.032] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
636	chr6	6743148	6743149	rs1294421	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Waist-hip ratio	4,774 European ancestry high waist-to-hip ratio individuals, 5,481 European ancestry low waist-to-hip ratio individuals	3,351 European ancestry high waist-to-hip ratio individuals, 3,352 European ancestry low waist-to-hip ratio individuals	6p25.1	LY86	rs1294421-G	0.62	2E-10		1.16	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
636	chr6	6743148	6743149	rs1294421	20935629	Heid IM	2010-10-10	Nat Genet	Meta-analysis identifies 13 new loci associated with waist-hip ratio and reveals sexual dimorphism in the genetic basis of fat distribution.	Waist-hip ratio	Up to 77,167 European ancestry individuals	Up to 113,636 European ancestry individuals	6p25.1	LY86	rs1294421-G	0.61	2E-17		0.03	[NR] unit increase	Affymetrix, Illumina, Perlegen [up to 2850269] (imputed)	N
636	chr6	6745026	6745027	rs1294432	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	6p25.1	NR	rs1294432-T	0.5376	5E-27		0.0187	[0.015-0.022] unit increase	NR [~ 27400000] (imputed)	N
636	chr6	6746165	6746166	rs1294436	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	315,284 European ancestry male individuals	NA	6p25.1	NR	rs1294436-C	0.5973	9E-48		0.0293	[0.025-0.033] unit increase	NR [~ 27400000] (imputed)	N
636	chr6	6746165	6746166	rs1294436	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	6p25.1	NA	rs1294436-C	0.5972	1E-30		0.023	[0.019-0.027] unit increase	NR [~ 27400000] (imputed)	N
636	chr6	6749068	6749069	rs9504915	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6p25.1	NR	rs9504915-?	NR	5E-40				Affymetrix [~ 8270000] (imputed)	N
636	chr6	6749068	6749069	rs9504915	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6p25.1	NR	rs9504915-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
636	chr6	6752058	6752059	rs1294438	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	6p25.1		rs1294438-?	NR	2E-52				NR [~ 8900000] (imputed)	N
636	chr6	6752058	6752059	rs1294438	25342443	Lindstrom S	2014-10-24	Nat Commun	Genome-wide association study identifies multiple loci associated with both mammographic density and breast cancer risk.	Mammographic density (non-dense area)	7,600 European ancestry individuals	343 European ancestry individuals, 1,472 Old Order Amish individuals, 8,564 individuals	6p25.1	intergenic	rs1294438-T	0.34	1E-6				Affymetrix, Illumina [~ 2500000] (imputed)	N
636	chr6	6755090	6755091	rs2181398	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	6p25.1	RP3-470L22.1	rs2181398-C	NR	5E-16		0.0241476	[0.018-0.03] unit increase	Affymetrix [321788] (imputed)	N
636	chr6	6755090	6755091	rs2181398	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p25.1	RP3-470L22.1	rs2181398-C	NR	1E-17		0.0244742	[0.019-0.03] unit increase	Affymetrix [321016] (imputed)	N
636	chr6	6755125	6755126	rs7775976	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p25.1	RP3-470L22.1	rs7775976-A	NR	1E-17		0.025018	[0.019-0.031] unit increase	Affymetrix [319769] (imputed)	N
636	chr6	6755125	6755126	rs7775976	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p25.1	RP3-470L22.1	rs7775976-A	NR	3E-17		0.0247008	[0.019-0.03] unit increase	Affymetrix [319769] (imputed)	N
636	chr6	6755125	6755126	rs7775976	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	6p25.1	RP3-470L22.1	rs7775976-A	NR	5E-15		0.0238949	[0.018-0.03] unit decrease	Affymetrix [321788] (imputed)	N
636	chr6	6755125	6755126	rs7775976	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p25.1	RP3-470L22.1	rs7775976-A	NR	2E-14		0.0223352	[0.017-0.028] unit decrease	Affymetrix [321016] (imputed)	N
636	chr6	6756404	6756405	rs9405973	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p25.1	RP3-470L22.1	rs9405973-A	NR	1E-8		0.0166219	[0.011-0.022] unit decrease	Affymetrix [321114] (imputed)	N
636	chr6	6757541	6757542	rs9378478	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p25.1	RP3-470L22.1	rs9378478-A	NR	7E-24		0.0288942	[0.023-0.035] unit decrease	Affymetrix [319769] (imputed)	N
636	chr6	6757541	6757542	rs9378478	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p25.1	RP3-470L22.1	rs9378478-A	NR	2E-23		0.0285914	[0.023-0.034] unit decrease	Affymetrix [319769] (imputed)	N
636	chr6	6757541	6757542	rs9378478	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p25.1	RP3-470L22.1	rs9378478-A	NR	2E-10		0.0184464	[0.013-0.024] unit decrease	Affymetrix [321169] (imputed)	N
636	chr6	6759070	6759070	rs397789768	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-to-hip ratio adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,049 whole genome sequenced individuals, 29,518 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,001 Mylopotamos (founder/genetic isolate) individuals, 867 Pomak (founder/genetic isolate) individuals	206,045 European ancestry individuals	6p25.1	RP3-470L22.1	rs397789768-CA	0.384	1E-6		0.0426	[0.025-0.06] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
636	chr6	6759104	6759105	rs6938081	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6p25.1	NR	rs6938081-?	NR	3E-28				Affymetrix [~ 8270000] (imputed)	N
636	chr6	6760862	6760863	rs1317418	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p25.1	RP3-470L22.1	rs1317418-G	NR	7E-19		0.0275515	[0.021-0.034] unit increase	Affymetrix [319769] (imputed)	N
636	chr6	6760862	6760863	rs1317418	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p25.1	RP3-470L22.1	rs1317418-G	NR	2E-18		0.0272539	[0.021-0.033] unit increase	Affymetrix [319769] (imputed)	N
636	chr6	6762117	6762118	rs2186206	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	6p25.1	RP3-470L22.1	rs2186206-G	NR	2E-8		0.0200895	[0.013-0.027] unit decrease	Affymetrix [321788] (imputed)	N
636	chr6	6762117	6762118	rs2186206	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p25.1	RP3-470L22.1	rs2186206-G	NR	4E-10		0.0214244	[0.015-0.028] unit decrease	Affymetrix [321016] (imputed)	N
636	chr6	6762166	6762167	rs2326778	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p25.1	RP3-470L22.1	rs2326778-A	NR	7E-9		0.0202748	[0.013-0.027] unit increase	Affymetrix [321169] (imputed)	N
636	chr6	6762723	6762724	rs9504921	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6p25.1		rs9504921-?	NR	1E-14				NR [~ 8900000] (imputed)	N
636	chr6	6766703	6766704	rs35688039	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p25.1	RP3-470L22.1	rs35688039-A	NR	1E-10		0.0237855	[0.017-0.031] unit increase	Affymetrix [319769] (imputed)	N
636	chr6	6767422	6767423	rs115325909	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p25.1	RP3-470L22.1	rs115325909-T	NR	5E-9		0.0317172	[0.021-0.042] unit decrease	Affymetrix [321016] (imputed)	N
636	chr6	6767422	6767423	rs115325909	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6p25.1	NR	rs115325909-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
636	chr6	6769929	6769930	rs6918434	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6p25.1	NR	rs6918434-?	NR	3E-15				Affymetrix [~ 8270000] (imputed)	N
636	chr6	6777450	6777451	rs4959403	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p25.1	BTF3P7	rs4959403-C	NR	6E-11		0.02415	[0.017-0.031] unit increase	Affymetrix [319769] (imputed)	N
636	chr6	6778673	6778674	rs7740617	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	6p25.1	BTF3P7	rs7740617-C	NR	4E-13		0.0233116	[0.017-0.03] unit decrease	Affymetrix [321788] (imputed)	N
636	chr6	6778673	6778674	rs7740617	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p25.1	BTF3P7	rs7740617-C	NR	8E-18		0.026532	[0.02-0.033] unit decrease	Affymetrix [321016] (imputed)	N
636	chr6	6782297	6782298	rs4960246	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p25.1	BTF3P7	rs4960246-G	NR	2E-31		0.0341119	[0.028-0.04] unit decrease	Affymetrix [319769] (imputed)	N
636	chr6	6782297	6782298	rs4960246	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p25.1	BTF3P7	rs4960246-G	NR	2E-32		0.0346067	[0.029-0.04] unit decrease	Affymetrix [319769] (imputed)	N
636	chr6	6782297	6782298	rs4960246	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p25.1	BTF3P7	rs4960246-G	NR	1E-12		0.0209807	[0.015-0.027] unit decrease	Affymetrix [321114] (imputed)	N
636	chr6	6782297	6782298	rs4960246	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	6p25.1	BTF3P7	rs4960246-G	NR	3E-21		0.0287424	[0.023-0.035] unit increase	Affymetrix [321788] (imputed)	N
636	chr6	6782297	6782298	rs4960246	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	6p25.1	BTF3P7	rs4960246-G	NR	3E-9		0.0197433	[0.013-0.026] unit increase	Affymetrix [323858] (imputed)	N
636	chr6	6782297	6782298	rs4960246	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p25.1	BTF3P7	rs4960246-G	NR	1E-17		0.0249792	[0.019-0.031] unit increase	Affymetrix [321016] (imputed)	N
636	chr6	6782297	6782298	rs4960246	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p25.1	BTF3P7	rs4960246-G	NR	2E-9		0.0192282	[0.013-0.025] unit increase	Affymetrix [323123] (imputed)	N
636	chr6	6782297	6782298	rs4960246	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p25.1	BTF3P7	rs4960246-G	NR	5E-14		0.0222189	[0.016-0.028] unit decrease	Affymetrix [321169] (imputed)	N
636	chr6	6784139	6784140	rs4959406	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6p25.1	NR	rs4959406-?	NR	4E-30				Affymetrix [~ 8270000] (imputed)	N
636	chr6	6786424	6786425	rs1573948	25866641	Xu W	2015-03-19	Biomark Res	A genome wide association study on Newfoundland colorectal cancer patients' survival outcomes.	Survival in rectal cancer	171 European ancestry cases	NA	6p25.1	intergenic	rs1573948-?		4E-6	(overall survival)	2.71	[1.77-4.15]	Illumina [729737]	N
636	chr6	6786424	6786425	rs1573948	25866641	Xu W	2015-03-19	Biomark Res	A genome wide association study on Newfoundland colorectal cancer patients' survival outcomes.	Survival in microsatellite instability low/stable colorectal cancer	431 European ancestry cases	NA	6p25.1	intergenic	rs1573948-?		5E-6	(overall survival)	1.93	[1.46-2.57]	Illumina [729737]	N
636	chr6	6796473	6796474	rs144852671	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Smoking x traumatic event in childhood (sexually molested) interaction	127,766 European ancestry individuals	NA	6p25.1		rs144852671-?	NR	3E-8		1.5539	[1.01-2.1] unit increase	Affymetrix [NR] (imputed)	N
636	chr6	6806170	6806171	rs2326825	27485664	Bonfiglio F	2016-08-03	Neurogastroenterol Motil	A meta-analysis of reflux genome-wide association studies in 6750 Northern Europeans from the general population.	Gastroesophageal reflux disease	2,247 European ancestry cases, 4,503 European ancestry controls	NA	6p25.1	BTF3P7, RPI1-80N2.2	rs2326825-T	0.33	4E-6				Illumina [2327020] (imputed)	N
637	chr6	6851405	6851406	rs143504932	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p25.1	NR	rs143504932-A	0.0122	7E-10	(ABRACL)	0.04542	NR unit increase	Illumina [1671387] (imputed)	N
637	chr6	6854488	6854489	rs7744366	30093639	Machiela MJ	2018-08-09	Nat Commun	Genome-wide association study identifies multiple new loci associated with Ewing sarcoma susceptibility.	Ewing sarcoma	733 European ancestry cases, 1,346 European ancestry controls	657 European ancestry cases, 4,078 European ancestry controls	6p25.1	RREB1, SSR1, CAGE1	rs7744366-G	NR	1E-18		1.74056	[1.53857-1.96907]	Illumina [6876682] (imputed)	N
637	chr6	6857639	6857640	rs17142630	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	6p25.1		rs17142630-?	NR	6E-19				NR [~ 8900000] (imputed)	N
637	chr6	6886296	6886297	rs876122	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6p25.1	NR	rs876122-?	NR	5E-10				Affymetrix [~ 8270000] (imputed)	N
637	chr6	6886296	6886297	rs876122	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6p25.1		rs876122-?	NR	7E-40				NR [~ 8900000] (imputed)	N
637	chr6	6901581	6901582	rs9392840	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	6p25.1		rs9392840-T	NR	3E-17		0.0211	[0.016-0.026] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
637	chr6	6901581	6901582	rs9392840	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p25.1	RP3-429O6.1	rs9392840-T	0.272405	8E-11		0.018236239	[0.013-0.024] unit increase	Affymetrix [93095623] (imputed)	N
637	chr6	6901658	6901659	rs2326837	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	6p25.1	RP3-429O6.1	rs2326837-G	0.3625	1E-11		0.02535951	[0.018-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
637	chr6	6901662	6901663	rs2326838	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	6p25.1	NR	rs2326838-G		1E-10		0.08	[0.06-0.1] unit increase	NR [NR]	N
637	chr6	6901855	6901856	rs9379066	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	6p25.1	LY86, RREB1, EEF1E1, BLOC1S5-TXNDC5, MRDS1, OFCC1, TFAP2A	rs9379066-?		1E-21				Affymetrix, Illumina [NR] (imputed)	N
637	chr6	6902938	6902939	rs9328393	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	6p25.1	RP3-429O6.1	rs9328393-A	0.66835	4E-12		0.016335424	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
637	chr6	6902938	6902939	rs9328393	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p25.1	RP3-429O6.1	rs9328393-A	0.668362	2E-9		0.015571423	[0.01-0.021] unit increase	Affymetrix [93095623] (imputed)	N
637	chr6	6902938	6902939	rs9328393	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p25.1	NR	rs9328393-A	0.589333	5E-30				Affymetrix, Illumina [23472807] (imputed)	N
637	chr6	6902938	6902939	rs9328393	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	6p25.1	NR	rs9328393-A	0.668424	6E-31		0.0234	[0.019-0.027] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
637	chr6	6911450	6911451	rs2249382	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	6p25.1	NR	rs2249382-?	NR	1E-7	(Japanese)	0.298	[NR] unit increase	Illumina [up to 11892802] (imputed)	N
637	chr6	6923833	6923834	rs66833621	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	6p25.1	RP3-429O6.1	rs66833621-C	0.192394	2E-18		0.024657622	[0.019-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
637	chr6	6923833	6923834	rs66833621	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6p25.1	RP3-429O6.1	rs66833621-C	0.192389	4E-19		0.025151469	[0.02-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
637	chr6	6923833	6923834	rs66833621	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	6p25.1	RP3-429O6.1	rs66833621-C	0.192544	2E-12		0.0192275	[0.014-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
637	chr6	6923833	6923834	rs66833621	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	6p25.1	RP3-429O6.1	rs66833621-C	0.192519	5E-10		0.01744358	[0.012-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
637	chr6	6923833	6923834	rs66833621	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6p25.1	RP3-429O6.1	rs66833621-C	0.192525	5E-11		0.018424816	[0.013-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
637	chr6	6924510	6924511	rs6597236	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	6p25.1		rs6597236-C	0.195085	5E-10		0.01737425	[0.012-0.023] unit increase	Affymetrix [93095623] (imputed)	N
637	chr6	6924510	6924511	rs6597236	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6p25.1		rs6597236-C	0.19512	4E-27		0.029682266	[0.024-0.035] unit increase	Affymetrix [93095623] (imputed)	N
637	chr6	6925076	6925077	rs6937957	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	6p25.1	NR	rs6937957-C	0.194957	2E-12		0.017796	[0.013-0.023] SD unit decrease	Affymetrix, Illumina [50282193] (imputed)	N
637	chr6	6925139	6925140	rs6911310	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	6p25.1		rs6911310-?	NR	4E-8				NR [~ 8900000] (imputed)	N
637	chr6	6926070	6926071	rs2326842	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	6p25.1		rs2326842-T	0.194822	2E-20		0.026323207	[0.021-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
638	chr6	6961570	6961571	rs9378485	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	6p25.1	RREB1	rs9378485-T	0.615921	7E-13		0.0135475	[0.0099-0.0172] unit increase	NR [13737936] (imputed)	N
638	chr6	6961570	6961571	rs9378485	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p25.1		rs9378485-?	NR	2E-15		0.0160898	[0.012-0.02] unit increase	Affymetrix [20259828] (imputed)	N
638	chr6	6971752	6971753	rs730551	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	6p25.1		rs730551-T	NR	3E-9		0.0119	[0.008-0.0158] unit increase	Affymetrix, Illumina [20535842] (imputed)	N
638	chr6	6971752	6971753	rs730551	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	6p25.1	NR	rs730551-T	NR	2E-11		0.0161	[0.011-0.021] unit increase	Affymetrix [9000000] (imputed)	N
638	chr6	6971752	6971753	rs730551	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	6p25.1	NR	rs730551-T	NR	1E-10		0.0154	[0.011-0.02] unit decrease	Affymetrix [9000000] (imputed)	N
638	chr6	6972592	6972593	rs942922	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	6p25.1	NR	rs942922-G	0.67878	2E-8		0.0116349	[0.0076-0.0157] unit increase	Affymetrix [15000001]	N
638	chr6	7004860	7004861	rs4640929	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	6p25.1		rs4640929-A	NR	1E-10		0.0158	[0.011-0.021] unit increase	Affymetrix, Illumina [20529698] (imputed)	N
638	chr6	7010695	7010696	rs35249938	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p25.1	RP11-556O15.1	rs35249938-A	NR	8E-9		0.0183919	[0.012-0.025] unit decrease	Affymetrix [127266] (imputed)	N
638	chr6	7017058	7017059	rs475011	34868232	Feng S	2021-11-18	Front Genet	Regulatory SNP of <i>RREB1</i> is Associated With Bone Mineral Density in Chinese Postmenopausal Osteoporosis Patients.	Bone mineral density T score in postmenopausal osteoporosis	150 Han Chinese ancestry individuals	191 Han Chinese ancestry individuals	6p25.1		rs475011-G	NR	1E-6		0.51	unit increase	Illumina [311319]	N
638	chr6	7018490	7018491	rs693317	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p25.1	snoU13	rs693317-C	NR	1E-8		0.0183795	[0.012-0.025] unit decrease	Affymetrix [323858] (imputed)	N
638	chr6	7018490	7018491	rs693317	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6p25.1	NR	rs693317-?	NR	7E-10				Affymetrix [~ 8270000] (imputed)	N
638	chr6	7035733	7035734	rs112498319	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	6p25.1	RREB1	rs112498319-C	0.4085	4E-7		1.03	[1.02-1.05]	Affymetrix, Illumina [~ 27000000] (imputed)	N
638	chr6	7043335	7043336	rs76440129	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	6p25.1	NR	rs76440129-A	NR	1E-12		0.0518	[0.037-0.066] unit increase	Affymetrix [9000000] (imputed)	N
638	chr6	7050934	7050935	rs116228246	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	6p25.1	RREB1	rs116228246-G	0.977543	5E-41		0.0823566	[0.07-0.094] unit decrease	NR [13737936] (imputed)	N
638	chr6	7050934	7050935	rs116228246	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	6p25.1		rs116228246-?	NR	1E-44				NR [~ 8900000] (imputed)	N
638	chr6	7056261	7056262	rs13218910	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p25.1	snoU13	rs13218910-C	NR	1E-9		0.0194167	[0.013-0.026] unit decrease	Affymetrix [323858] (imputed)	N
638	chr6	7056261	7056262	rs13218910	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p25.1	snoU13	rs13218910-C	NR	1E-9		0.0194168	[0.013-0.026] unit decrease	Affymetrix [127266] (imputed)	N
638	chr6	7058318	7058319	rs531077	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6p25.1	NR	rs531077-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
638	chr6	7058515	7058516	rs62393575	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	6p25.1		rs62393575-C	0.052525	5E-9		0.02948214	[0.02-0.039] unit decrease	Affymetrix [93095623] (imputed)	N
638	chr6	7058515	7058516	rs62393575	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p25.1	NR	rs62393575-C	0.0514408	1E-9				Affymetrix, Illumina [19905671] (imputed)	N
638	chr6	7058515	7058516	rs62393575	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	6p25.1	NR	rs62393575-C	0.053036	1E-11		0.031393	[0.022-0.04] SD unit decrease	Affymetrix, Illumina [50036608] (imputed)	N
638	chr6	7058856	7058857	rs525678	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p25.1		rs525678-?	NR	1E-41		0.0710899	[0.06-0.082] unit increase	Affymetrix [20259828] (imputed)	N
638	chr6	7058856	7058857	rs525678	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	6p25.1	RREB1	rs525678-A	0.0383123	7E-11	(women)	0.0775697	[0.054-0.101] unit increase	NR [17166351] (imputed)	N
638	chr6	7058856	7058857	rs525678	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	6p25.1	RREB1	rs525678-A	0.0381506	2E-20		0.0780394	[0.061-0.095] unit increase	NR [17166351] (imputed)	N
638	chr6	7058856	7058857	rs525678	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	6p25.1	RREB1	rs525678-A	0.0379654	5E-9	(men)	0.0724383	[0.046-0.099] unit increase	NR [17166351] (imputed)	N
638	chr6	7062597	7062598	rs620695	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6p25.1	NR	rs620695-?	NR	5E-10				Affymetrix [~ 8270000] (imputed)	N
638	chr6	7066480	7066481	rs71531541	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p25.1	snoU13	rs71531541-C	NR	3E-9		0.0209796	[0.014-0.028] unit decrease	Affymetrix [323858] (imputed)	N
638	chr6	7066480	7066481	rs71531541	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p25.1	snoU13	rs71531541-C	NR	2E-9		0.0212588	[0.014-0.028] unit decrease	Affymetrix [127266] (imputed)	N
638	chr6	7066480	7066481	rs71531541	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	6p25.1		rs71531541-T	0.727019	1E-14		0.01951416	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
638	chr6	7066480	7066481	rs71531541	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	6p25.1		rs71531541-T	0.727002	7E-11		0.016421683	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
638	chr6	7066480	7066481	rs71531541	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	6p25.1	NR	rs71531541-C	0.270952	4E-12		0.0239736	[0.017-0.031] unit increase	NR [19129689] (imputed)	N
638	chr6	7075781	7075782	rs611615	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	6p25.1	NR	rs611615-A	NR	2E-17		0.0501	[0.039-0.062] unit decrease	Affymetrix [9000000] (imputed)	N
638	chr6	7076690	7076691	rs6925562	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p25.1	RREB1	rs6925562-C	NR	6E-9		0.0198545	[0.013-0.027] unit decrease	Affymetrix [323858] (imputed)	N
638	chr6	7076690	7076691	rs6925562	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p25.1	RREB1	rs6925562-C	NR	3E-9		0.0202446	[0.014-0.027] unit decrease	Affymetrix [127266] (imputed)	N
639	chr6	7080822	7080823	rs35257692	31626034	Thomsen H	2019-10-11	Melanoma Res	Genome-wide study on uveal melanoma patients finds association to DNA repair gene TDP1.	Uveal melanoma with any chromosomal aberration	417 European ancestry cases, 5,199 European ancestry controls	NA	6p25.1		rs35257692-G	0.66	3E-6		1.48		Illumina [10258281] (imputed)	N
639	chr6	7080822	7080823	rs35257692	31626034	Thomsen H	2019-10-11	Melanoma Res	Genome-wide study on uveal melanoma patients finds association to DNA repair gene TDP1.	Uveal melanoma	590 European ancestry cases, 5,199 European ancestry controls	NA	6p25.1		rs35257692-G	0.66	2E-6		1.39	[1.21-1.59]	Illumina [10258281] (imputed)	N
639	chr6	7085816	7085817	rs61025394	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	6p25.1		rs61025394-A	NR	2E-9		0.014	[0.0095-0.0185] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
639	chr6	7085816	7085817	rs61025394	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	6p25.1		rs61025394-A	0.210877	3E-9		0.016444957	[0.011-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
639	chr6	7085816	7085817	rs61025394	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p25.1		rs61025394-A	0.210858	1E-9		0.016614573	[0.011-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
639	chr6	7085816	7085817	rs61025394	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p25.1	NR	rs61025394-A	0.336748	2E-13				Affymetrix, Illumina [24588908] (imputed)	N
639	chr6	7085816	7085817	rs61025394	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	6p25.1	NR	rs61025394-A	0.211683	2E-14		0.017173	[0.013-0.022] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
639	chr6	7085816	7085817	rs61025394	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	6p25.1	intergenic	rs61025394-A	0.2118	3E-9		0.02662813	[0.018-0.035] unit decrease	Affymetrix [~ 2500000] (imputed)	N
639	chr6	7095389	7095390	rs73719061	30070759	Olsson M	2018-08-02	J Thromb Haemost	Genome-wide analysis of genetic determinants of circulating factor VII activating protease (FSAP) activity.	Plasma factor VII activating protease levels	3,126 Swedish ancestry individuals	NA	6p25.1	Intergenic	rs73719061-?		2E-6		123.8	[73.04-174.56] unit increase	Illumina [~ 10000000] (imputed)	N
639	chr6	7098255	7098256	rs617030	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	6p25.1		rs617030-?	NR	8E-10				NR [~ 8900000] (imputed)	N
639	chr6	7100028	7100029	rs12211604	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	6p25.1	NR	rs12211604-G	0.372251	6E-13		0.0150536	[0.011-0.019] unit decrease	NR [NR]	N
639	chr6	7100028	7100029	rs12211604	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	6p25.1	LY86	rs12211604-G	NR	2E-8		1.0654166	NR	Affymetrix, Illumina [8278136] (imputed)	N
639	chr6	7102083	7102084	rs675209	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Varicose veins	22,037 European ancestry cases, 437,665 European ancestry controls, 474 East Asian ancestry cases, 178,252 East Asian ancestry controls	NA	6p24.3		rs675209-C	NR	1E-9		0.0715	[0.049-0.094] unit increase	Affymetrix, Illumina [25842955] (imputed)	N
639	chr6	7102083	7102084	rs675209	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	6p24.3	NR	rs675209-T	0.27	1E-84		0.0401	[0.036-0.044] unit increase	NR [NR]	N
639	chr6	7102083	7102084	rs675209	31985003	Boocock J	2020-01-27	Hum Mol Genet	Genomic dissection of 43 serum urate-associated loci provides multiple insights into molecular mechanisms of urate control.	Urate levels	110,238 European ancestry individuals, 21,471 East Asian individuals	NA	6p24.3	RREB1	rs675209-T		4E-23		0.062	[0.05-0.074] mg/dl increase	NR [NR] (imputed)	N
639	chr6	7102083	7102084	rs675209	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals, at least 88,461 European ancestry individuals	NA	6p24.3	LY86, RREB1	rs675209-T	0.216	6E-24	(EA)	0.045	[0.036-0.054] unit increase	Illumina [1986983] (imputed)	N
639	chr6	7102083	7102084	rs675209	23263486	Kottgen A	2012-12-23	Nat Genet	Genome-wide association analyses identify 18 new loci associated with serum urate concentrations.	Urate levels	49,825 European ancestry males, 60,522 European ancestry females	Up to 32,813 European ancestry individuals	6p24.3	RREB1	rs675209-T	0.27	1E-23		0.0612	[0.049-0.073] mg/dl increase	Affymetrix, Illumina, Perlegen [2450547] (imputed)	N
639	chr6	7102083	7102084	rs675209	20884846	Yang Q	2010-09-30	Circ Cardiovasc Genet	Multiple genetic loci influence serum urate levels and their relationship with gout and cardiovascular disease risk factors.	Urate levels	28,283 European ancestry individuals	22,054 European ancestry individuals	6p24.3	RREB1	rs675209-T	0.26	1E-9	(Urate)	4.39	[2.98-5.80] umol/l increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
639	chr6	7106315	7106316	rs2842895	27918534	Chu AY	2016-12-05	Nat Genet	Multiethnic genome-wide meta-analysis of ectopic fat depots identifies loci associated with adipocyte development and differentiation.	Visceral adipose tissue/subcutaneous adipose tissue ratio adjusted for BMI	7,618 European ancestry women, 7,050 European ancestry men, 2,205 African American women, 1,324 African American men.	NA	6p24.3	RREB1	rs2842895-?	NR	9E-6				Affymetrix, Illumina [~ 2600000] (imputed)	N
639	chr6	7106315	7106316	rs2842895	27918534	Chu AY	2016-12-05	Nat Genet	Multiethnic genome-wide meta-analysis of ectopic fat depots identifies loci associated with adipocyte development and differentiation.	Visceral adipose tissue adjusted for BMI	7,432 European ancestry men, 1,306 African American men	NA	6p24.3	RREB1	rs2842895-?	NR	2E-6				Affymetrix, Illumina [~ 2600000] (imputed)	N
639	chr6	7106315	7106316	rs2842895	27918534	Chu AY	2016-12-05	Nat Genet	Multiethnic genome-wide meta-analysis of ectopic fat depots identifies loci associated with adipocyte development and differentiation.	Visceral adipose tissue adjusted for BMI	7,431 European ancestry women, 7,432 European ancestry men, 2,163 African American women, 1,306 African American men	NA	6p24.3	RREB1	rs2842895-C	0.58	6E-9	(EA)	5.8	z-score increase	Affymetrix, Illumina [~ 2600000] (imputed)	N
639	chr6	7106315	7106316	rs2842895	27918534	Chu AY	2016-12-05	Nat Genet	Multiethnic genome-wide meta-analysis of ectopic fat depots identifies loci associated with adipocyte development and differentiation.	Visceral adipose tissue adjusted for BMI	7,431 European ancestry women, 7,432 European ancestry men, 2,163 African American women, 1,306 African American men	NA	6p24.3	RREB1	rs2842895-C	0.5	1E-8		5.72	z-score increase	Affymetrix, Illumina [~ 2600000] (imputed)	N
639	chr6	7106315	7106316	rs2842895	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue adjusted for BMI	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	6p24.3	RREB1	rs2842895-C	0.58	4E-6	(overall)			Affymetrix, Illumina [2500000] (imputed)	N
639	chr6	7106315	7106316	rs2842895	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue adjusted for BMI	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	6p24.3	RREB1	rs2842895-C	0.58	4E-6	(overall)			Affymetrix, Illumina [2500000] (imputed)	N
639	chr6	7109664	7109665	rs3904600	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	6p24.3		rs3904600-C	0.37	2E-16		8.21	z score increase	Affymetrix [9061022] (imputed)	N
639	chr6	7109664	7109665	rs3904600	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p24.3	RREB1	rs3904600-C	NR	1E-13		0.0240717	[0.018-0.03] unit decrease	Affymetrix [323858] (imputed)	N
639	chr6	7109664	7109665	rs3904600	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p24.3	RREB1	rs3904600-C	NR	8E-14		0.0241952	[0.018-0.031] unit decrease	Affymetrix [127266] (imputed)	N
639	chr6	7109664	7109665	rs3904600	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	6p24.3	RREB1	rs3904600-C	0.4047	5E-51		0.0573	[0.05-0.065] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
639	chr6	7109664	7109665	rs3904600	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	6p24.3	NR	rs3904600-C	0.6187	2E-21	(women)	0.054	[0.043-0.065] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
639	chr6	7109664	7109665	rs3904600	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	6p24.3	NR	rs3904600-C	0.5961	5E-18	(men)	0.0569	[0.044-0.07] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
639	chr6	7109664	7109665	rs3904600	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	6p24.3		rs3904600-?	NR	6E-22				NR [~ 8900000] (imputed)	N
639	chr6	7109664	7109665	rs3904600	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	6p24.3		rs3904600-?	NR	2E-14				NR [~ 8900000] (imputed)	N
639	chr6	7112818	7112819	rs6925389	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	6p24.3	NR	rs6925389-A	0.3691	1E-17				NR [9056863] (imputed)	N
639	chr6	7112818	7112819	rs6925389	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 5)	19,670 European ancestry individuals	NA	6p24.3		rs6925389-?	NR	7E-13				NR [9705931] (imputed)	N
639	chr6	7115926	7115927	rs1285875	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	6p24.3	NA	rs1285875-G	0.2738	5E-9	(Female)	1.0504202	[1.03-1.07]	Affymetrix, Illumina [NR] (imputed)	N
639	chr6	7118989	7118990	rs11755724	33832965	Sandoval-Plata G	2021-04-08	Ann Rheum Dis	Variants in urate transporters, ADH1B, GCKR and MEPE genes associate with transition from asymptomatic hyperuricaemia to gout: results of the first gout versus asymptomatic hyperuricaemia GWAS in Caucasians using data from the UK Biobank.	Gout	7,049 European ancestry cases, 64,424 European ancestry controls	NA	6p24.3	RREB1	rs11755724-A	0.36	9E-15		1.17	[1.12-1.21]	Affymetrix [710030]	N
639	chr6	7118989	7118990	rs11755724	31407831	Din L	2019-08-13	Genet Epidemiol	Genetic overlap between autoimmune diseases and non-Hodgkin lymphoma subtypes.	Chronic lymphocytic leukemia or multiple sclerosis	2,492 European ancestry chronic lymphocytic leukemia cases, 9,772 European ancestry multiple sclerosis cases, 24,529 European ancestry controls	NA	6p24.3	RREB1	rs11755724-?	NR	1E-8		1.0913455		Illumina [~ 460000] (imputed)	N
639	chr6	7118989	7118990	rs11755724	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	6p24.3	RREB1	rs11755724-A	0.3721	1E-19		0.0027	[0.0019-0.0035] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
639	chr6	7118989	7118990	rs11755724	21833088	Sawcer S	2011-08-11	Nature	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	6p24.3	RREB1	rs11755724-A	NR	3E-6		1.08	[1.06-1.09]	Illumina [465434]	N
639	chr6	7118989	7118990	rs11755724	20385826	Neale BM	2010-04-12	Proc Natl Acad Sci U S A	Genome-wide association study of advanced age-related macular degeneration identifies a role of the hepatic lipase gene (LIPC).	Age-related macular degeneration	979 cases, 1,709 controls	868 European ancestry cases, 410 European ancestry controls, 4,921 cases, 3,824 controls	6p24.3	RREB1	rs11755724-G	0.64	1E-6		1.15	[1.09-1.14]	Affymetrix [632932]	N
639	chr6	7119133	7119134	rs13208234	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	6p24.3	NR	rs13208234-A	0.618	2E-8	(Lateral Orbitofrontal)	7.813901	[5.08-10.55] unit decrease	Affymetrix, Illumina [NR]	N
639	chr6	7120456	7120457	rs11243143	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	6p24.3		rs11243143-G	0.37	9E-18		8.59	z score increase	Affymetrix [9061022] (imputed)	N
639	chr6	7120456	7120457	rs11243143	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	6p24.3		rs11243143-A	NR	5E-63		0.0353	[0.031-0.039] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
639	chr6	7120456	7120457	rs11243143	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	6p24.3	NR	rs11243143-G	0.3631	2E-16				NR [9056863] (imputed)	N
639	chr6	7120456	7120457	rs11243143	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p24.3	RREB1	rs11243143-G	NR	4E-8		0.0177094	[0.011-0.024] unit decrease	Affymetrix [323858] (imputed)	N
639	chr6	7122935	7122936	rs1297769	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	6p24.3	NR	rs1297769-A	0.05	4E-8		0.0228	[0.014-0.031] unit increase	NR [NR]	N
639	chr6	7125528	7125529	rs80097396	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	6p24.3	NR	rs80097396-G	NR	8E-13		0.0332	[0.024-0.042] unit decrease	Affymetrix [9000000] (imputed)	N
639	chr6	7125528	7125529	rs80097396	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	6p24.3	NR	rs80097396-G	NR	4E-14		0.0349	[0.026-0.044] unit decrease	Affymetrix [9000000] (imputed)	N
639	chr6	7125708	7125709	rs6933716	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	6p24.3	RREB1	rs6933716-T	0.363	1E-10		0.0025	[0.0017-0.0033] unit increase	Affymetrix [NR] (imputed)	N
639	chr6	7128075	7128076	rs687467	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	6p24.3		rs687467-?	NR	5E-14				NR [~ 8900000] (imputed)	N
639	chr6	7128197	7128198	rs13193887	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	6p24.3		rs13193887-G	0.37	3E-33		12.02	z score increase	Affymetrix [9061022] (imputed)	N
639	chr6	7128197	7128198	rs13193887	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	6p24.3	TANK, PSMD14, TBR1	rs13193887-?		1E-8				NR [7428630] (imputed)	N
639	chr6	7131435	7131436	rs11243145	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	6p24.3	RREB1, SSR1	rs11243145-?		9E-13				NR [7428630] (imputed)	N
639	chr6	7131459	7131460	rs681794	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	154,355 East Asian ancestry individuals	NA	6p24.3		rs681794-G	0.046612	3E-10		0.0508285	[0.035-0.067] unit increase	Illumina [13479091] (imputed)	N
639	chr6	7132602	7132602	rs35379140	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	6p24.3		rs35379140-CT	NR	3E-24		0.0206	[0.017-0.025] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
639	chr6	7137362	7137363	rs1285879	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p24.3	NR	rs1285879-C	0.607445	3E-32				Affymetrix, Illumina [24649327] (imputed)	N
639	chr6	7139063	7139064	rs665723	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p24.3	NR	rs665723-T	0.657172	5E-21				Affymetrix, Illumina [23114412] (imputed)	N
639	chr6	7139160	7139161	rs11303054	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	6p24.3	RREB1	rs11303054-C	0.7539	2E-12		0.02959356	[0.021-0.038] unit increase	Affymetrix [~ 2500000] (imputed)	N
639	chr6	7140830	7140831	rs1285886	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	6p24.3		rs1285886-A	NR	3E-25		0.029	[0.024-0.034] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
639	chr6	7140830	7140831	rs1285886	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	6p24.3		rs1285886-A	NR	7E-31		0.0324	[0.027-0.038] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
639	chr6	7140830	7140831	rs1285886	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p24.3		rs1285886-G	0.804	5E-12				Affymetrix [10369434] (imputed)	N
639	chr6	7140830	7140831	rs1285886	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p24.3		rs1285886-G	0.804	2E-18				Affymetrix [10369434] (imputed)	N
639	chr6	7140830	7140831	rs1285886	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p24.3	RREB1	rs1285886-A	0.19705	1E-28		0.031496566	[0.026-0.037] unit increase	Affymetrix [93095623] (imputed)	N
639	chr6	7140830	7140831	rs1285886	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	6p24.3	RREB1	rs1285886-A	0.197081	3E-13		0.02075289	[0.015-0.026] unit increase	Affymetrix [93095623] (imputed)	N
639	chr6	7140830	7140831	rs1285886	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	6p24.3	NR	rs1285886-A	0.196802	5E-30		0.026498	[0.022-0.031] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
639	chr6	7140830	7140831	rs1285886	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	6p24.3	NR	rs1285886-A	0.196771	6E-40		0.031319	[0.027-0.036] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
639	chr6	7140830	7140831	rs1285886	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	6p24.3		rs1285886-?	NR	6E-26				NR [~ 8900000] (imputed)	N
639	chr6	7140830	7140831	rs1285886	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	6p24.3	RREB1	rs1285886-A	0.1956	3E-10		0.02893744	[0.02-0.038] unit increase	Affymetrix [~ 2500000] (imputed)	N
639	chr6	7142890	7142891	rs1285885	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p24.3	NR	rs1285885-A	0.178318	5E-42				Affymetrix, Illumina [23467995] (imputed)	N
639	chr6	7143858	7143859	rs115806594	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	6p24.3	RREB1	rs115806594-A	0.015709	6E-14		0.070872456	[0.052-0.089] unit decrease	Affymetrix [93095623] (imputed)	N
639	chr6	7143858	7143859	rs115806594	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	6p24.3	RREB1	rs115806594-A	0.015678	3E-11		0.061661255	[0.043-0.08] unit decrease	Affymetrix [93095623] (imputed)	N
639	chr6	7145190	7145191	rs557074	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p24.3		rs557074-T	0.801	1E-12				Affymetrix [10369434] (imputed)	N
639	chr6	7145190	7145191	rs557074	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p24.3		rs557074-T	0.801	2E-13				Affymetrix [10369434] (imputed)	N
639	chr6	7145190	7145191	rs557074	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	6p24.3	RREB1	rs557074-G	0.19932	2E-40		0.037266742	[0.032-0.043] unit increase	Affymetrix [93095623] (imputed)	N
639	chr6	7145190	7145191	rs557074	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	6p24.3	RREB1	rs557074-G	0.1982	5E-12		0.03105644	[0.022-0.04] unit increase	Affymetrix [~ 2500000] (imputed)	N
639	chr6	7146349	7146350	rs4960289	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	6p24.3		rs4960289-?	NR	5E-41				NR [~ 8900000] (imputed)	N
639	chr6	7155189	7155190	rs11758778	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p24.3	RREB1	rs11758778-T	0.066986	8E-18		0.038960967	[0.03-0.048] unit increase	Affymetrix [93095623] (imputed)	N
639	chr6	7155189	7155190	rs11758778	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	6p24.3	RREB1	rs11758778-T	0.066995	4E-14		0.034303706	[0.025-0.043] unit increase	Affymetrix [93095623] (imputed)	N
639	chr6	7156758	7156759	rs55986493	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	6p24.3	RREB1	rs55986493-T	0.067188	1E-24		0.046153463	[0.037-0.055] unit increase	Affymetrix [93095623] (imputed)	N
639	chr6	7156758	7156759	rs55986493	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	6p24.3	RREB1	rs55986493-T	0.0674	4E-9		0.04286195	[0.029-0.057] unit increase	Affymetrix [~ 2500000] (imputed)	N
639	chr6	7156758	7156759	rs55986493	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	6p24.3	RREB1	rs55986493-T	0.0674	3E-9		0.04291104	[0.029-0.057] unit increase	Affymetrix [~ 2500000] (imputed)	N
639	chr6	7157666	7157667	rs57996771	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	6p24.3	RREB1	rs57996771-C	0.167733	3E-11		0.020836024	[0.015-0.027] unit increase	Affymetrix [93095623] (imputed)	N
639	chr6	7157666	7157667	rs57996771	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	6p24.3	RREB1	rs57996771-C	0.1693	7E-11		0.03274342	[0.023-0.043] unit increase	Affymetrix [~ 2500000] (imputed)	N
639	chr6	7157666	7157667	rs57996771	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	6p24.3	RREB1	rs57996771-C	0.1693	4E-11		0.03306844	[0.023-0.043] unit increase	Affymetrix [~ 2500000] (imputed)	N
639	chr6	7157666	7157667	rs57996771	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	6p24.3	RREB1	rs57996771-C	0.1693	5E-9		0.02934395	[0.02-0.039] unit increase	Affymetrix [~ 2500000] (imputed)	N
639	chr6	7158224	7158225	rs1297770	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p24.3	RREB1	rs1297770-T	0.18924	2E-13		0.02080716	[0.015-0.026] unit increase	Affymetrix [93095623] (imputed)	N
639	chr6	7160013	7160014	rs4959426	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p24.3	RREB1	rs4959426-G	NR	2E-9		0.0188187	[0.013-0.025] unit decrease	Affymetrix [323858] (imputed)	N
639	chr6	7160013	7160014	rs4959426	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p24.3	RREB1	rs4959426-G	NR	1E-9		0.0192405	[0.013-0.025] unit decrease	Affymetrix [127266] (imputed)	N
639	chr6	7168022	7168023	rs75062003	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	6p24.3	NR	rs75062003-T	NR	2E-16		0.0392	[0.03-0.049] unit increase	Affymetrix [9000000] (imputed)	N
639	chr6	7189566	7189567	rs75818295	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous melanoma or hair colour	36,760 European ancestry cutaneous melanoma cases, 375,188 European ancestry controls, 352,662 European ancestry individuals	NA	6p24.3	Y_RNA	rs75818295-C	0.954681	8E-10				Affymetrix, Illumina [NR] (imputed)	N
639	chr6	7189857	7189858	rs59431963	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical thickness (MOSTest)	26,502 European ancestry individuals	NA	6p24.3	POGK, TADA1, ILDR2, MAEL	rs59431963-?		4E-8				NR [7428630] (imputed)	N
639	chr6	7192633	7192634	rs4960291	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p24.3	RREB1	rs4960291-T	NR	1E-9		0.0198228	[0.013-0.026] unit decrease	Affymetrix [321016] (imputed)	N
639	chr6	7196322	7196323	rs77630070	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p24.3		rs77630070-T	0.807511	3E-9		1.033776	[1.02-1.05]	Affymetrix, Illumina [9851866] (imputed)	N
639	chr6	7197345	7197346	rs4959431	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p24.3	RREB1	rs4959431-A	NR	3E-9		0.017175	[0.012-0.023] unit decrease	Affymetrix [321016] (imputed)	N
639	chr6	7201659	7201660	rs6936191	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	6p24.3		rs6936191-C	NR	8E-14		0.0173	[0.013-0.022] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
639	chr6	7201659	7201660	rs6936191	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	6p24.3	NR	rs6936191-C	0.608046	1E-19		0.018088	[0.014-0.022] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
639	chr6	7203713	7203714	rs6921580	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	6p24.3	RREB1	rs6921580-C	0.4127	2E-19		0.0027	[0.0019-0.0035] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
639	chr6	7205795	7205796	rs4960295	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	6p24.3		rs4960295-A	NR	2E-8		0.0128	[0.0083-0.0173] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
639	chr6	7205795	7205796	rs4960295	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (multi-trait analysis)	90,939 European ancestry individuals	NA	6p24.3	RREB1	rs4960295-G	0.54	2E-19		0.0078	NR unit decrease	Affymetrix, Illumina [8002429] (imputed)	N
639	chr6	7205795	7205796	rs4960295	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Vertical cup-disc ratio	21,768 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	8,168 Asian ancestry individuals	6p24.3	RREB1	rs4960295-A	NR	2E-8	(EA)	0.007	[0.005-0.009] unit increase	Affymetrix, Illumina [~ 8000000] (imputed)	N
639	chr6	7205795	7205796	rs4960295	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Vertical cup-disc ratio	21,768 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	8,168 Asian ancestry individuals	6p24.3	RREB1	rs4960295-A	NR	2E-10		0.007	[0.005-0.009] unit increase	Affymetrix, Illumina [~ 8000000] (imputed)	N
640	chr6	7209131	7209132	rs7751325	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p24.3	RREB1	rs7751325-T	NR	2E-8		0.0158376	[0.01-0.021] unit increase	Affymetrix [321016] (imputed)	N
640	chr6	7211750	7211751	rs1334577	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p24.3	RREB1	rs1334577-A	0.235994	3E-12		0.018425701	[0.013-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
640	chr6	7211750	7211751	rs1334577	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	6p24.3	RREB1	rs1334577-A	0.2372	4E-9		0.02474309	[0.017-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
640	chr6	7211750	7211751	rs1334577	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	6p24.3	RREB1	rs1334577-A	0.2372	3E-9		0.02485225	[0.017-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
640	chr6	7211817	7211818	rs1334576	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p24.3	RREB1	rs1334576-A	NR	6E-9		0.018313	[0.012-0.024] unit decrease	Affymetrix [323858] (imputed)	N
640	chr6	7211817	7211818	rs1334576	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p24.3	RREB1	rs1334576-A	NR	2E-8		0.0176806	[0.011-0.024] unit decrease	Affymetrix [127266] (imputed)	N
640	chr6	7211817	7211818	rs1334576	33909500	Moll M	2021-04-28	Am J Physiol Lung Cell Mol Physiol	A Systematic Analysis of Protein-altering Exonic Variants in Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease	up to 31,465 European ancestry cases, up to 203,688 European ancestry controls, up to 1,413 African ancestry cases, up to 6,080 African ancestry controls, up to 287 East Asian ancestry cases, up to 7,484 East Asian ancestry controls, up to 61 Hispanic cases, up to 613 Hispanic controls	NA	6p24.3	RREB1	rs1334576-A	0.42	5E-8		1.05	[1.03 -1.07]	Illumina [at least 109036]	N
640	chr6	7211817	7211818	rs1334576	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	6p24.3		rs1334576-A	0.4231	2E-16		0.12786886	[0.097-0.159] mmHg decrease	Affymetrix, Illumina [242866] (imputed)	N
640	chr6	7211817	7211818	rs1334576	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p24.3	NR	rs1334576-A	0.43	2E-8			[NR]	Affymetrix [9886854] (imputed)	N
640	chr6	7211817	7211818	rs1334576	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p24.3	NR	rs1334576-A	0.43	9E-10		1.08	[1.05-1.1]	Affymetrix [9886854] (imputed)	N
640	chr6	7211817	7211818	rs1334576	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p24.3	NR	rs1334576-A	0.43	4E-9			[NR]	Affymetrix [9886854] (imputed)	N
640	chr6	7211817	7211818	rs1334576	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in non-current smokers	16,488 European ancestry cases, 169,688 European ancestry controls	NA	6p24.3	NR	rs1334576-A	0.43	8E-10		1.08	[1.05-1.1]	Affymetrix [9886854] (imputed)	N
640	chr6	7211817	7211818	rs1334576	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6p24.3	NR	rs1334576-?	NR	5E-19				Affymetrix [~ 8270000] (imputed)	N
640	chr6	7211817	7211818	rs1334576	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	6p24.3	RREB1	rs1334576-A	0.42	1E-8		1.06	[1.04-1.08]	Affymetrix, Illumina [6224355] (imputed)	N
640	chr6	7211817	7211818	rs1334576	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 157,516 European ancestry women, up to 180,131 African American, South Asian, East Asian and Hispanic ancestry women	up to 62,368 European ancestry women	6p24.3	RREB1	rs1334576-G	0.5724	5E-6		0.014	[0.0079-0.0201] unit increase	Affymetrix, Illumina [at least 228985]	N
640	chr6	7211817	7211818	rs1334576	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 130,976 European ancestry men, up to 164,238  African American, South Asian, East Asian and Hispanic ancestry men	up to 62,500 European ancestry men	6p24.3	RREB1	rs1334576-G	0.5574	1E-11		0.0202	[0.014-0.026] unit increase	Affymetrix, Illumina [at least 228985]	N
640	chr6	7211817	7211818	rs1334576	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 130,976 European ancestry men	up to 62,500 European ancestry men	6p24.3	RREB1	rs1334576-G	0.5718	1E-10		0.0209	[0.015-0.027] unit increase	Affymetrix, Illumina [at least 228985]	N
640	chr6	7211817	7211818	rs1334576	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	288,492 European ancestry individuals, up to 15,687 African American individuals, up to 29,315 South Asian ancestry individuals, up to 6,800 East Asian ancestry individuals, up to 4,075 Hispanic ancestry individuals	132,177 European ancestry individuals	6p24.3	RREB1	rs1334576-G	0.5649	4E-15		0.0171	[0.013-0.021] unit increase	Affymetrix, Illumina [at least 228985]	N
640	chr6	7211817	7211818	rs1334576	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	288,492 European ancestry individuals	132,177 European ancestry individuals	6p24.3	RREB1	rs1334576-G	0.5743	4E-13		0.0166	[0.012-0.021] unit increase	Affymetrix, Illumina [at least 228985]	N
640	chr6	7211817	7211818	rs1334576	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	6p24.3	NR	rs1334576-A	0.4254	3E-21		0.0171	[0.014-0.021] unit decrease	NR [~ 27400000] (imputed)	N
640	chr6	7211817	7211818	rs1334576	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	315,284 European ancestry male individuals	NA	6p24.3	NR	rs1334576-A	0.4254	3E-21		0.0171	[0.014-0.021] unit decrease	NR [~ 27400000] (imputed)	N
640	chr6	7211817	7211818	rs1334576	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	6p24.3	NA	rs1334576-A	0.4254	2E-19		0.0162	[0.013-0.02] unit decrease	NR [~ 27400000] (imputed)	N
640	chr6	7211817	7211818	rs1334576	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	6p24.3	NR	rs1334576-A	0.4254	2E-19		0.0162	[0.013-0.02] unit decrease	NR [~ 27400000] (imputed)	N
640	chr6	7211817	7211818	rs1334576	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	316,772 European ancestry male individuals	NA	6p24.3	NR	rs1334576-A	0.4254	2E-19		0.0162	[0.013-0.02] unit decrease	NR [~ 27400000] (imputed)	N
640	chr6	7211817	7211818	rs1334576	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	6p24.3	RREB1	rs1334576-A	0.4179	4E-11		0.1149	[0.081-0.149] unit decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
640	chr6	7212083	7212084	rs4960297	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (adjusted for vertical disc diameter)	67,040 British ancestry individuals	NA	6p24.3	RREB1	rs4960297-C	0.55	1E-13		0.00654	[0.0048-0.0083] unit decrease	Affymetrix [at least 8002429] (imputed)	N
640	chr6	7213015	7213016	rs17603945	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	6p24.3	NR	rs17603945-A	0.185841	3E-40		0.031261	[0.027-0.036] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
640	chr6	7213199	7213200	rs17762454	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p24.3	NR	rs17762454-T	0.283808	2E-10				Affymetrix, Illumina [21126107] (imputed)	N
640	chr6	7213906	7213907	rs76052955	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	6p24.3	RREB1	rs76052955-A	0.8219	4E-10		0.1613	[0.11-0.21] mmHg increase	Affymetrix [NR] (imputed)	N
640	chr6	7214675	7214676	rs12530084	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	6p24.3	RREB1	rs12530084-T	0.2198	1E-47		0.06643	[0.057-0.075] mg/dL increase	Affymetrix, Illumina [8217339] (imputed)	N
640	chr6	7215540	7215541	rs6919004	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	6p24.3	RREB1	rs6919004-C	0.553393	1E-18		0.00189299	[0.0014-0.0023] unit increase	Affymetrix [13995440] (imputed)	N
640	chr6	7215540	7215541	rs6919004	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	6p24.3	RREB1	rs6919004-C	0.55	6E-9		5.81	z-score increase	Affymetrix [4311822] (imputed)	N
640	chr6	7216183	7216186	rs3028732	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	6p24.3		rs3028732-T	NR	1E-9		0.0127	[0.0086-0.0168] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
640	chr6	7216483	7216484	rs1413700	27629089	Sailer A	2016-09-14	Neurology	A genome-wide association study in multiple system atrophy.	Multiple system atrophy	918 European ancestry cases, 3,864 European ancestry controls	NA	6p24.3	RREB1	rs1413700-G	0.79	3E-6		1.39		Illumina [4903804] (imputed)	N
640	chr6	7217052	7217053	rs12200266	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	6p24.3	RREB1	rs12200266-G	0.098448	9E-13		0.02686224	[0.02-0.034] unit increase	Affymetrix [93095623] (imputed)	N
640	chr6	7217052	7217053	rs12200266	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6p24.3	RREB1	rs12200266-G	0.098443	3E-14		0.02848295	[0.021-0.036] unit increase	Affymetrix [93095623] (imputed)	N
640	chr6	7217516	7217517	rs6931262	23966867	Liu CT	2013-08-15	PLoS Genet	Genome-wide association of body fat distribution in African ancestry populations suggests new loci.	Waist-hip ratio	up to 19,744 African American individuals	Up to 7,606 African American individuals	6p24.3	RREB1	rs6931262-T	0.25	3E-8	(BMI_pooled)	0.06	[0.04-0.08] unit increase	Affymetrix, Illumina [3200000] (imputed)	N
640	chr6	7217663	7217664	rs34884023	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6p24.3	RREB1	rs34884023-C	0.120779	6E-18		0.029435188	[0.023-0.036] unit increase	Affymetrix [93095623] (imputed)	N
640	chr6	7218336	7218337	rs13192435	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	6p24.3	NR	rs13192435-C	NR	2E-11		0.0525	[0.037-0.068] unit increase	Affymetrix [9000000] (imputed)	N
640	chr6	7220378	7220379	rs57340203	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p24.3	RREB1	rs57340203-G	NR	4E-8		0.022327	[0.014-0.03] unit decrease	Affymetrix [323858] (imputed)	N
640	chr6	7220378	7220379	rs57340203	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p24.3	RREB1	rs57340203-G	NR	4E-8		0.0222666	[0.014-0.03] unit decrease	Affymetrix [127266] (imputed)	N
640	chr6	7220378	7220379	rs57340203	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6p24.3	NR	rs57340203-?	NR	5E-10				Affymetrix [~ 8270000] (imputed)	N
640	chr6	7220959	7220960	rs9379082	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p24.3	RREB1	rs9379082-C	NR	3E-11		0.057924	[0.041-0.075] unit decrease	Affymetrix [321016] (imputed)	N
640	chr6	7221442	7221443	rs9379083	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	6p24.3	RREB1	rs9379083-A	0.216196	1E-9		0.016739294	[0.011-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
640	chr6	7222092	7222093	rs6927173	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	6p24.3	RREB1	rs6927173-T	0.443209	7E-11		0.015100783	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
640	chr6	7223565	7223566	rs147287945	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Eotaxin levels	8,153 Finnish ancestry individuals	NA	6p24.3	NR	rs147287945-G	NR	5E-6		0.1428	[0.081-0.204] SD units increase	NR [10700000] (imputed)	N
640	chr6	7225673	7225674	rs9328401	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p24.3	RREB1	rs9328401-C	NR	2E-8		0.0502055	[0.033-0.068] unit decrease	Affymetrix [321016] (imputed)	N
640	chr6	7226809	7226810	rs143231463	29124443	Yasukochi Y	2017-11-09	Mol Genet Genomics	Identification of CDC42BPG as a novel susceptibility locus for hyperuricemia in a Japanese population.	Serum uric acid levels	5,847 Japanese ancestry individuals	NA	6p24.3	RREB1	rs143231463-?	9.97606E-5	2E-16				Illumina [~ 244000]	N
640	chr6	7226809	7226810	rs143231463	29124443	Yasukochi Y	2017-11-09	Mol Genet Genomics	Identification of CDC42BPG as a novel susceptibility locus for hyperuricemia in a Japanese population.	Hyperuricemia	847 Japanese ancestry cases, 4,640 Japanese ancestry controls	972 Japanese ancestry cases, 4,584 Japanese ancestry controls	6p24.3	RREB1	rs143231463-?	9.97606E-5	2E-16				Illumina [~ 244000]	N
640	chr6	7226809	7226810	rs143231463	29124443	Yasukochi Y	2017-11-09	Mol Genet Genomics	Identification of CDC42BPG as a novel susceptibility locus for hyperuricemia in a Japanese population.	Estimated glomerular filtration rate	5,636 Japanese ancestry individuals	NA	6p24.3	RREB1	rs143231463-?	9.65997E-5	2E-16				Illumina [~ 244000]	N
640	chr6	7226958	7226959	rs9505085	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	46,511 Asian ancestry cases, 169,776 Asian ancestry controls	NA	6p24.3	NR	rs9505085-C	0.6671	5E-8		0.0511	[0.033-0.069] unit increase	Affymetrix, Illumina [1077427] (imputed)	N
640	chr6	7226958	7226959	rs9505085	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	6p24.3	SSR1, RREB1	rs9505085-C	0.67	3E-8		1.05	1.03-1.07	Illumina [12557761] (imputed)	N
640	chr6	7228045	7228046	rs2714311	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	95,119 East Asian ancestry individuals	NA	6p24.3		rs2714311-C	0.351164	2E-8		0.0259167	[0.017-0.035] unit increase	Illumina [13471440] (imputed)	N
640	chr6	7229618	7229619	rs12192672	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	6p24.3		rs12192672-A	NR	8E-24		0.0208	[0.017-0.025] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
640	chr6	7229618	7229619	rs12192672	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	6p24.3		rs12192672-A	NR	6E-24		0.0215	[0.017-0.026] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
640	chr6	7229618	7229619	rs12192672	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	6p24.3	RREB1	rs12192672-A	0.29621	4E-19		0.022333208	[0.017-0.027] unit increase	Affymetrix [93095623] (imputed)	N
640	chr6	7229618	7229619	rs12192672	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p24.3	RREB1	rs12192672-A	0.296	4E-6		0.032	[0.018-0.046] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
640	chr6	7231114	7231115	rs141635364	29124443	Yasukochi Y	2017-11-09	Mol Genet Genomics	Identification of CDC42BPG as a novel susceptibility locus for hyperuricemia in a Japanese population.	Chronic kidney disease	606 Japanese ancestry cases, 1,040 Japanese ancestry controls	2,517 Japanese ancestry cases, 885 Japanese ancestry controls	6p24.3	RREB1	rs141635364-?	1.93199E-4	7E-15				Illumina [~ 244000]	N
640	chr6	7231769	7231770	rs34561875	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6p24.3	NR	rs34561875-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
640	chr6	7231795	7231796	rs35521383	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	6p24.3	RREB1	rs35521383-A	0.014709	3E-10		0.0533155	[0.037-0.07] unit increase	Affymetrix [93095623] (imputed)	N
640	chr6	7231842	7231843	rs9379084	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	6p24.3		rs9379084-A	0.275713508	1E-10		0.070026994	[0.049-0.091] unit decrease	Illumina [13429769] (imputed)	N
640	chr6	7231842	7231843	rs9379084	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	6p24.3		rs9379084-A	NR	1E-21		0.0816	[0.065-0.098] unit decrease	Affymetrix, Illumina [25845091] (imputed)	N
640	chr6	7231842	7231843	rs9379084	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	6p24.3		rs9379084-A	NR	1E-14		0.023	[0.017-0.029] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
640	chr6	7231842	7231843	rs9379084	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	133,321 East Asian ancestry individuals	NA	6p24.3		rs9379084-A	0.274246	1E-11		0.0300352	[0.021-0.039] unit increase	Illumina [13477433] (imputed)	N
640	chr6	7231842	7231843	rs9379084	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	6p24.3		rs9379084-A	NR	1E-13		0.0744	[0.055-0.094] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
640	chr6	7231842	7231843	rs9379084	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	6p24.3		rs9379084-A	0.272791	1E-26		0.0253576	[0.021-0.03] unit decrease	Illumina [13479295] (imputed)	N
640	chr6	7231842	7231843	rs9379084	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	6p24.3		rs9379084-A	NR	7E-18		0.0232	[0.018-0.028] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
640	chr6	7231842	7231843	rs9379084	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p24.3	RREB1	rs9379084-A	NR	5E-10		0.0307534	[0.021-0.04] unit decrease	Affymetrix [323123] (imputed)	N
640	chr6	7231842	7231843	rs9379084	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	6p24.3	RREB1	rs9379084-A	0.1155	2E-20		0.0271	[0.021-0.033] unit decrease	Affymetrix [18391927] (imputed)	N
640	chr6	7231842	7231843	rs9379084	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	244,730 European ancestry women	NA	6p24.3	RREB1	rs9379084-A	0.116	4E-9		0.02	[0.012-0.028] unit decrease	Affymetrix [18391927] (imputed)	N
640	chr6	7231842	7231843	rs9379084	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	205,513 European ancestry men	NA	6p24.3	RREB1	rs9379084-A	0.116	3E-13		0.03	[0.022-0.038] unit decrease	Affymetrix [18391927] (imputed)	N
640	chr6	7231842	7231843	rs9379084	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	6p24.3	NR	rs9379084-G	0.8803	4E-22		0.0747	[0.06-0.09] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
640	chr6	7231842	7231843	rs9379084	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	6p24.3	NR	rs9379084-G	0.843	5E-31		0.0715	[0.059-0.084] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
640	chr6	7231842	7231843	rs9379084	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	6p24.3	SSR1, RREB1	rs9379084-G	0.799	2E-14		1.07	[1.05-1.09]	Affymetrix, Illumina [11800000] (imputed)	N
640	chr6	7231842	7231843	rs9379084	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	6p24.3	NR	rs9379084-G	0.884415	5E-26		0.0138383	[0.011-0.016] unit increase	Affymetrix [16582909] (imputed)	N
640	chr6	7231842	7231843	rs9379084	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	6p24.3	NR	rs9379084-G	0.884204	2E-10		0.012719	[0.0088-0.0166] unit increase	Affymetrix [16585854] (imputed)	N
640	chr6	7231842	7231843	rs9379084	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	6p24.3	NR	rs9379084-G	0.884644	2E-20		0.0161934	[0.013-0.02] unit increase	Affymetrix [16582621] (imputed)	N
640	chr6	7231842	7231843	rs9379084	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	6p24.3	NR	rs9379084-G	0.884415	5E-23		0.0145332	[0.012-0.017] unit increase	Affymetrix [16582965] (imputed)	N
640	chr6	7231842	7231843	rs9379084	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	6p24.3	NR	rs9379084-G	0.884204	3E-10		0.0148429	[0.01-0.019] unit increase	Affymetrix [16585866] (imputed)	N
640	chr6	7231842	7231843	rs9379084	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	6p24.3	NR	rs9379084-G	0.884644	1E-15		0.0153264	[0.011-0.019] unit increase	Affymetrix [16582614] (imputed)	N
640	chr6	7231842	7231843	rs9379084	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	6p24.3	NR	rs9379084-A	0.11583500000000002	3E-8		0.0224985	[0.014-0.031] unit increase	Affymetrix [16585745] (imputed)	N
640	chr6	7231842	7231843	rs9379084	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	6p24.3	RREB1	rs9379084-?	NR	8E-30		0.03771175	[0.031-0.044] unit decrease	Illumina [27896057] (imputed)	N
640	chr6	7231842	7231843	rs9379084	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	6p24.3	RREB1	rs9379084-G	0.883436	1E-16		0.040696	[0.031-0.05] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
640	chr6	7231842	7231843	rs9379084	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	6p24.3	RREB1	rs9379084-G	0.882647	1E-7		0.021801	[0.014-0.03] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
640	chr6	7231842	7231843	rs9379084	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 29,0641 European ancestry controls	NA	6p24.3	RREB1	rs9379084-A	0.104171	3E-8		0.10827128	[0.07-0.147] unit decrease	Affymetrix [7288503] (imputed)	N
640	chr6	7231842	7231843	rs9379084	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	6p24.3	RREB1	rs9379084-G	0.895148	1E-30		0.0340199	[0.028-0.04] unit increase	NR [13737936] (imputed)	N
640	chr6	7231842	7231843	rs9379084	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Type 2 diabetes	approximately 459,000 European ancestry individuals	NA	6p24.3		rs9379084-?	NR	2E-15				NR [~ 8900000] (imputed)	N
640	chr6	7231842	7231843	rs9379084	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6p24.3		rs9379084-?	NR	4E-65				NR [~ 8900000] (imputed)	N
640	chr6	7231842	7231843	rs9379084	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	6p24.3		rs9379084-?	NR	8E-36				NR [~ 8900000] (imputed)	N
640	chr6	7231842	7231843	rs9379084	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	6p24.3	RREB1	rs9379084-G	0.8873	3E-21		1.11	[1.08-1.13]	Affymetrix, Illumina [~ 27000000] (imputed)	N
640	chr6	7231842	7231843	rs9379084	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p24.3		rs9379084-?	NR	5E-36		0.0389254	[0.032-0.045] unit increase	Affymetrix [20259828] (imputed)	N
640	chr6	7231842	7231843	rs9379084	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes (adjusted for BMI)	up to 48,286 European ancestry cases, up to 250,671 European ancestry controls	NA	6p24.3	RREB1	rs9379084-G	0.887	2E-13		1.09	[1.06-1.12]	Affymetrix, Illumina [247470]	N
640	chr6	7231842	7231843	rs9379084	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes (adjusted for BMI)	48,286 European ancestry cases, 250,671 European ancestry controls, 33,126 African American, East Asian, Hispanic/Latino or South Asian cases, 120,161 African American, East Asian, Hispanic/Latino or South Asian controls	NA	6p24.3	RREB1	rs9379084-G	0.884	2E-17		1.1	[1.07-1.13]	Affymetrix, Illumina [247470]	N
640	chr6	7231842	7231843	rs9379084	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes	up to 48,286 European ancestry cases, up to 250,671 European ancestry controls	NA	6p24.3	RREB1	rs9379084-G	0.887	2E-12		1.1	[1.07-1.13]	Affymetrix, Illumina [247470]	N
640	chr6	7231842	7231843	rs9379084	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes	48,286 European ancestry cases, 250,671 European ancestry controls, 33,126 African American, East Asian, Hispanic/Latino or South Asian cases, 120,161 African American, East Asian, Hispanic/Latino or South Asian controls	NA	6p24.3	RREB1	rs9379084-G	0.884	1E-13		1.08	[1.06-1.11]	Affymetrix, Illumina [247470]	N
640	chr6	7231842	7231843	rs9379084	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p24.3	NR	rs9379084-A	0.1206	3E-6	(EA)	0.0486	[0.028-0.069] unit increase	Illumina [~ 11800000] (imputed)	N
640	chr6	7231842	7231843	rs9379084	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	6p24.3	RREB1	rs9379084-G	0.883136	6E-9	(women)	0.0410614	[0.027-0.056] unit increase	NR [17166351] (imputed)	N
640	chr6	7231842	7231843	rs9379084	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	6p24.3	RREB1	rs9379084-G	0.882997	3E-15		0.0413825	[0.031-0.052] unit increase	NR [17166351] (imputed)	N
640	chr6	7231842	7231843	rs9379084	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	6p24.3	RREB1	rs9379084-G	0.882837	4E-7	(men)	0.0397905	[0.024-0.056] unit increase	NR [17166351] (imputed)	N
640	chr6	7231842	7231843	rs9379084	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p24.3	RREB1	rs9379084-A	0.1228	1E-7		0.0569	[0.036-0.078] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
640	chr6	7232185	7232186	rs9505086	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	6p24.3	RREB1	rs9505086-C	0.385478	2E-15		0.018417431	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
640	chr6	7232388	7232389	rs75757892	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p24.3	NR	rs75757892-T	0.14153	4E-39				Affymetrix, Illumina [24653286] (imputed)	N
640	chr6	7232388	7232389	rs75757892	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	6p24.3	NR	rs75757892-T	0.179504	2E-41		0.03246	[0.028-0.037] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
640	chr6	7232388	7232389	rs75757892	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	6p24.3		rs75757892-?	NR	7E-31				NR [~ 8900000] (imputed)	N
640	chr6	7232388	7232389	rs75757892	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	6p24.3	Intergenic	rs75757892-T	0.1698	2E-8	(MTAG)	0.0134	[0.0087-0.0181] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
640	chr6	7232388	7232389	rs75757892	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	6p24.3	RREB1	rs75757892-T	0.1826	6E-12		0.03181995	[0.023-0.041] unit increase	Affymetrix [~ 2500000] (imputed)	N
640	chr6	7232388	7232389	rs75757892	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	6p24.3	RREB1	rs75757892-T	0.1826	6E-14		0.03442745	[0.025-0.043] unit increase	Affymetrix [~ 2500000] (imputed)	N
640	chr6	7236662	7236663	rs76823979	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	6p24.3		rs76823979-T	NR	2E-21		0.0301	[0.024-0.036] unit decrease	Affymetrix, Illumina [20535873] (imputed)	N
640	chr6	7238068	7238069	rs2714335	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p24.3	RREB1	rs2714335-T	NR	2E-8		0.0181573	[0.012-0.025] unit increase	Affymetrix [323858] (imputed)	N
640	chr6	7238068	7238069	rs2714335	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p24.3	RREB1	rs2714335-T	NR	5E-8		0.017692	[0.011-0.024] unit increase	Affymetrix [127266] (imputed)	N
640	chr6	7240576	7240577	rs2714337	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SYT11	5,365 Icelandic ancestry individuals	NA	6p24.3		rs2714337-T	0.3095	2E-17		0.174744	[0.13-0.21] unit increase	Illumina [7506463] (imputed)	N
640	chr6	7240576	7240577	rs2714337	22581228	Manning AK	2012-05-13	Nat Genet	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting blood glucose (BMI interaction)	Up to 58,074 European ancestry individuals	Up tp 38,422 European ancestry individuals	6p24.3	RREB1	rs2714337-A	0.6326	3E-7		2.678E-4	[-0.00087-0.00141] unit decrease	Affymetrix, Illumina [~ 2400000] (imputed)	N
640	chr6	7240576	7240577	rs2714337	22581228	Manning AK	2012-05-13	Nat Genet	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting blood glucose	Up to 58,074 European ancestry individuals	Up tp 38,422 European ancestry individuals	6p24.3	RREB1	rs2714337-A	0.631	1E-6		0.0122	[0.0071-0.0173] unit decrease	Affymetrix, Illumina [~ 2400000] (imputed)	N
640	chr6	7242604	7242605	rs11752007	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	6p24.3	RREB1	rs11752007-T	0.873791	4E-18		0.00663711	[0.0051-0.0082] unit decrease	Affymetrix [13995440] (imputed)	N
640	chr6	7247343	7247344	rs35742417	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	6p24.3		rs35742417-A	NR	1E-26		0.0312	[0.026-0.037] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
640	chr6	7247343	7247344	rs35742417	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p24.3	RREB1	rs35742417-A	NR	2E-11		0.0241635	[0.017-0.031] unit increase	Affymetrix [321016] (imputed)	N
640	chr6	7247343	7247344	rs35742417	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p24.3	RREB1	rs35742417-A	NR	9E-12		0.0268392	[0.019-0.035] unit increase	Affymetrix [323123] (imputed)	N
640	chr6	7247343	7247344	rs35742417	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	6p24.3	NR	rs35742417-A	NR	1E-9		0.0188	[0.013-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
640	chr6	7247343	7247344	rs35742417	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	6p24.3	NR	rs35742417-A	NR	3E-12		0.0226	[0.016-0.029] unit increase	Affymetrix [9000000] (imputed)	N
640	chr6	7247343	7247344	rs35742417	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	6p24.3	NR	rs35742417-A	NR	3E-29		0.0354	[0.029-0.042] unit decrease	Affymetrix [9000000] (imputed)	N
640	chr6	7247343	7247344	rs35742417	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	6p24.3	NR	rs35742417-A	NR	2E-23		0.0321	[0.026-0.038] unit decrease	Affymetrix [9000000] (imputed)	N
640	chr6	7247343	7247344	rs35742417	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p24.3	RREB1	rs35742417-A		3E-21		0.026	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
640	chr6	7247343	7247344	rs35742417	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes (adjusted for BMI)	up to 48,286 European ancestry cases, up to 250,671 European ancestry controls	NA	6p24.3	RREB1	rs35742417-C	0.807	3E-6		1.04	[1.02-1.06]	Affymetrix, Illumina [247470]	N
640	chr6	7247343	7247344	rs35742417	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes (adjusted for BMI)	48,286 European ancestry cases, 250,671 European ancestry controls, 33,126 African American, East Asian, Hispanic/Latino or South Asian cases, 120,161 African American, East Asian, Hispanic/Latino or South Asian controls	NA	6p24.3	RREB1	rs35742417-C	NR	2E-7		1.04	[1.02-1.06]	Affymetrix, Illumina [247470]	N
640	chr6	7247343	7247344	rs35742417	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes	up to 48,286 European ancestry cases, up to 250,671 European ancestry controls	NA	6p24.3	RREB1	rs35742417-C	0.807	6E-6		1.04	(1.02-1.06)	Affymetrix, Illumina [247470]	N
640	chr6	7247343	7247344	rs35742417	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes	48,286 European ancestry cases, 250,671 European ancestry controls, 33,126 African American, East Asian, Hispanic/Latino or South Asian cases, 120,161 African American, East Asian, Hispanic/Latino or South Asian controls	NA	6p24.3	RREB1	rs35742417-C	0.836	6E-8		1.04	[1.03-1.06]	Affymetrix, Illumina [247470]	N
640	chr6	7247343	7247344	rs35742417	25625282	Mahajan A	2015-01-27	PLoS Genet	Identification and functional characterization of G6PC2 coding variants influencing glycemic traits define an effector transcript at the G6PC2-ABCB11 locus.	Fasting blood glucose adjusted for BMI	up to 33,231 non-diabetic individuals	NA	6p24.3	RREB1	rs35742417-A	0.21	8E-9		0.024	[0.016-0.032] unit decrease	Illumina [106489]	N
640	chr6	7249459	7249460	rs78588343	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	6p24.3	RREB1	rs78588343-G	0.823786	2E-9		0.0157113	[0.011-0.021] unit increase	Affymetrix [NR] (imputed)	N
640	chr6	7250269	7250270	rs3778321	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glucose levels	114,870 European ancestry individuals	NA	6p24.3		rs3778321-G	0.822354	3E-10		0.0338077	[0.023-0.044] unit increase	NR [11722792] (imputed)	N
640	chr6	7250269	7250270	rs3778321	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	6p24.3	RREB1	rs3778321-A	0.1894	4E-11		0.0106	[0.0075-0.0137] unit decrease	Affymetrix, Illumina [33811881] (imputed)	N
640	chr6	7250269	7250270	rs3778321	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	200,622 European ancestry individuals	NA	6p24.3	RREB1	rs3778321-A	0.1915	3E-17		0.0186	[0.014-0.023] unit decrease	Affymetrix, Illumina [34064007] (imputed)	N
640	chr6	7250959	7250960	rs2714338	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	6p24.3		rs2714338-?	NR	1E-9				NR [~ 8900000] (imputed)	N
640	chr6	7251036	7251037	rs2842352	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p24.3		rs2842352-?	NR	2E-11		0.0189983	[0.013-0.025] unit increase	Affymetrix [20259828] (imputed)	N
640	chr6	7255609	7255610	rs75479205	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	6p24.3	RREB1	rs75479205-A	0.810505	1E-8		0.0139462	[0.0092-0.0187] unit decrease	Affymetrix [NR] (imputed)	N
640	chr6	7255649	7255650	rs9505097	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	6p24.3		rs9505097-T	NR	4E-25		0.0252	[0.02-0.03] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
640	chr6	7255649	7255650	rs9505097	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	6p24.3		rs9505097-T	NR	3E-9		0.0165	[0.011-0.022] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
640	chr6	7255649	7255650	rs9505097	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	6p24.3	RREB1	rs9505097-T	0.198035	5E-28		0.029988991	[0.025-0.035] unit increase	Affymetrix [93095623] (imputed)	N
640	chr6	7255649	7255650	rs9505097	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	6p24.3	RREB1	rs9505097-T	0.198052	3E-32		0.03271283	[0.027-0.038] unit increase	Affymetrix [93095623] (imputed)	N
640	chr6	7255649	7255650	rs9505097	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p24.3	NR	rs9505097-T	0.163473	1E-38				Affymetrix, Illumina [24332387] (imputed)	N
640	chr6	7255649	7255650	rs9505097	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p24.3	NR	rs9505097-T	0.165343	2E-48				Affymetrix, Illumina [24558453] (imputed)	N
640	chr6	7255649	7255650	rs9505097	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	6p24.3	NR	rs9505097-T	0.19672	1E-50		0.034776	[0.03-0.039] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
640	chr6	7255649	7255650	rs9505097	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	High density lipoprotein cholesterol levels	291,107 British ancestry individuals	NA	6p24.3	RREB1	rs9505097-T	0.200192	3E-9		0.00677458	[0.0045-0.009] unit increase	Affymetrix [9463307] (imputed)	N
640	chr6	7255649	7255650	rs9505097	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	Blood glucose levels	291,107 British ancestry individuals	NA	6p24.3	RREB1	rs9505097-T	0.200192	4E-7		0.00472044	[0.0029-0.0065] unit decrease	Affymetrix [9463307] (imputed)	N
640	chr6	7255649	7255650	rs9505097	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	6p24.3	RREB1	rs9505097-C	0.7994	9E-10		1.05	[1.03-1.07]	Affymetrix, Illumina [~ 27000000] (imputed)	N
640	chr6	7258522	7258523	rs11759008	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p24.3	RREB1	rs11759008-C	NR	3E-8		0.0177119	[0.011-0.024] unit decrease	Affymetrix [323858] (imputed)	N
640	chr6	7258522	7258523	rs11759008	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p24.3	RREB1	rs11759008-C	NR	2E-8		0.0163178	[0.011-0.022] unit increase	Affymetrix [321016] (imputed)	N
640	chr6	7258616	7258617	rs9502570	24509480	Mahajan A	2014-02-09	Nat Genet	Genome-wide trans-ancestry meta-analysis provides insight into the genetic architecture of type 2 diabetes susceptibility.	Type 2 diabetes	12,171 European ancestry cases, 56,862 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls	21,491 European ancestry cases, 55,647 European ancestry controls	6p24.3	RREB1, SSR1	rs9502570-A		1E-9		1.06	[1.04-1.08]	Affymetrix, Illumina [2500000] (imputed)	N
640	chr6	7269297	7269298	rs62393599	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	6p24.3	NR	rs62393599-T	NR	1E-11		0.0534	[0.038-0.069] unit increase	Affymetrix [9000000] (imputed)	N
640	chr6	7278045	7278046	rs9502577	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p24.3	SSR1, RP11-69L16.4	rs9502577-G	NR	5E-8		0.0200639	[0.013-0.027] unit decrease	Affymetrix [323123] (imputed)	N
640	chr6	7281653	7281654	rs1050226	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	6p24.3	RREB1	rs1050226-G	0.406792300585879	3E-11		0.0491	[0.035-0.064] unit decrease	NR [5035015] (imputed)	N
640	chr6	7290436	7290437	rs9505118	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	6p24.3	SSR1	rs9505118-G	0.4165	2E-8		0.044	[0.028-0.06] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
640	chr6	7290436	7290437	rs9505118	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	6p24.3	SSR1	rs9505118-G	0.4165	1E-9	(EA)	0.0626	[0.042-0.083] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
640	chr6	7315562	7315563	rs35911902	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	6p24.3		rs35911902-?	NR	1E-8				NR [~ 8900000] (imputed)	N
640	chr6	7316185	7316186	rs77494115	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	6p24.3		rs77494115-T	NR	5E-10		0.0254	[0.017-0.033] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
640	chr6	7317482	7317483	rs144370238	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	6p24.3	SSR1, CAGE1	rs144370238-T	0.011	1E-9		6.046	[NR] z score decrease	Affymetrix, Illumina [~ 11000000] (imputed)	N
641	chr6	7345342	7345343	rs114189788	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia	11,197 European ancestry low myopic cases, 21,416 European ancestry emmetropia controls	NA	6p24.3	NR	rs114189788-?	NR	4E-6		0.539021	[0.31-0.77] unit decrease	NR [13958389] (imputed)	N
641	chr6	7395483	7395484	rs62386195	33649051	Duchen D	2021-03-01	Infect Immun	Host genome wide association study of infant susceptibility to <i>Shigella</i>-associated diarrhea.	Shigella-associated diarrhea	143 Bangladeshi cases, 446 Bangladeshi controls	NA	6p24.3	RIOK1	rs62386195-?	NR	7E-6				Illumina [5729117] (imputed)	N
641	chr6	7452509	7452509	rs200392355	34847907	Tegelberg P	2021-11-30	BMC Oral Health	Genome-wide association study of periodontal pocketing in Finnish adults.	Periodontal pocket (adjusted for age, sex, smoking status  and plaque)	3,906 Finnish ancestry individuals	NA	6p24.3		rs200392355-CT	0.46	1E-6		0.16	[0.097-0.223] number of affected teeth increase	Illumina [NR] (imputed)	N
641	chr6	7452509	7452509	rs200392355	34847907	Tegelberg P	2021-11-30	BMC Oral Health	Genome-wide association study of periodontal pocketing in Finnish adults.	Periodontal pocket (adjusted for age, sex and smoking status)	3,906 Finnish ancestry individuals	NA	6p24.3		rs200392355-CT	0.46	2E-6		0.14	[0.081-0.199] number of affected teeth increase	Illumina [NR] (imputed)	N
642	chr6	7502748	7502749	rs7771320	27659466	van der Harst P	2016-09-27	J Am Coll Cardiol	52 Genetic Loci Influencing Myocardial Mass.	QRS complex (12-leadsum)	up to 47,942 European ancestry individuals, up to 690 Orcadian (founder/genetic isolate) individuals	13,263 European ancestry individuals, 3,603 African American individuals, 4,619 Indian ancestry individuals	6p24.3	NR	rs7771320-?	NR	2E-8	(EA)			Affymetrix, Illumina, Perlegen [2766983] (imputed)	N
642	chr6	7518914	7518915	rs112019128	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	6p24.3	DSP	rs112019128-T	0.0932	1E-15		0.9414	[0.71-1.17] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
642	chr6	7527268	7527269	rs72825038	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p24.3	DSP	rs72825038-G	0.905517	9E-9	(258 ms)	0.0550253	[0.036-0.074] unit increase	Affymetrix [10000000] (imputed)	N
642	chr6	7527268	7527269	rs72825038	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p24.3	DSP	rs72825038-G	0.905517	9E-9	(12 ms)	0.0549455	[0.036-0.074] unit increase	Affymetrix [10000000] (imputed)	N
642	chr6	7527268	7527269	rs72825038	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p24.3	DSP	rs72825038-G	0.905517	9E-10	(6 ms)	0.0586003	[0.04-0.077] unit increase	Affymetrix [10000000] (imputed)	N
642	chr6	7527268	7527269	rs72825038	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p24.3	DSP	rs72825038-G	0.905517	9E-10	(4 ms)	0.0584989	[0.04-0.077] unit increase	Affymetrix [10000000] (imputed)	N
642	chr6	7527268	7527269	rs72825038	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p24.3	DSP	rs72825038-G	0.905517	9E-10	(2 ms)	0.0582898	[0.039-0.077] unit increase	Affymetrix [10000000] (imputed)	N
642	chr6	7527268	7527269	rs72825038	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p24.3	DSP	rs72825038-G	0.905517	7E-10	(-6 ms)	0.0601711	[0.041-0.079] unit increase	Affymetrix [10000000] (imputed)	N
642	chr6	7527268	7527269	rs72825038	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p24.3	DSP	rs72825038-G	0.905517	7E-10	(-10 ms)	0.0605501	[0.042-0.079] unit increase	Affymetrix [10000000] (imputed)	N
642	chr6	7527268	7527269	rs72825038	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p24.3	DSP	rs72825038-G	0.905517	6E-10	(-4 ms)	0.059448	[0.041-0.078] unit increase	Affymetrix [10000000] (imputed)	N
642	chr6	7527268	7527269	rs72825038	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p24.3	DSP	rs72825038-G	0.905517	5E-10	(8 ms)	0.0595713	[0.041-0.078] unit increase	Affymetrix [10000000] (imputed)	N
642	chr6	7527268	7527269	rs72825038	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p24.3	DSP	rs72825038-G	0.905517	5E-10	(-8 ms)	0.0606684	[0.042-0.079] unit increase	Affymetrix [10000000] (imputed)	N
642	chr6	7527268	7527269	rs72825038	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p24.3	DSP	rs72825038-G	0.905517	3E-8	(254 ms)	0.0538602	[0.035-0.073] unit increase	Affymetrix [10000000] (imputed)	N
642	chr6	7527268	7527269	rs72825038	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p24.3	DSP	rs72825038-G	0.905517	3E-8	(250 ms)	0.0536999	[0.035-0.073] unit increase	Affymetrix [10000000] (imputed)	N
642	chr6	7527268	7527269	rs72825038	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p24.3	DSP	rs72825038-G	0.905517	3E-8	(242 ms)	0.0537556	[0.035-0.073] unit increase	Affymetrix [10000000] (imputed)	N
642	chr6	7527268	7527269	rs72825038	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p24.3	DSP	rs72825038-G	0.905517	2E-8	(260 ms)	0.0540927	[0.035-0.073] unit increase	Affymetrix [10000000] (imputed)	N
642	chr6	7527268	7527269	rs72825038	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p24.3	DSP	rs72825038-G	0.905517	2E-8	(256 ms)	0.0541686	[0.035-0.073] unit increase	Affymetrix [10000000] (imputed)	N
642	chr6	7527268	7527269	rs72825038	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p24.3	DSP	rs72825038-G	0.905517	2E-8	(252 ms)	0.0549369	[0.036-0.074] unit increase	Affymetrix [10000000] (imputed)	N
642	chr6	7527268	7527269	rs72825038	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p24.3	DSP	rs72825038-G	0.905517	1E-9	(10 ms)	0.0587136	[0.04-0.078] unit increase	Affymetrix [10000000] (imputed)	N
642	chr6	7527268	7527269	rs72825038	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p24.3	DSP	rs72825038-G	0.905517	1E-9	(0 ms)	0.0575448	[0.039-0.076] unit increase	Affymetrix [10000000] (imputed)	N
642	chr6	7527268	7527269	rs72825038	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p24.3	DSP	rs72825038-G	0.905517	1E-9	(-2 ms)	0.0580304	[0.039-0.077] unit increase	Affymetrix [10000000] (imputed)	N
642	chr6	7527268	7527269	rs72825038	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p24.3	DSP	rs72825038-G	0.905517	1E-8	(238 ms)	0.0551825	[0.036-0.074] unit increase	Affymetrix [10000000] (imputed)	N
642	chr6	7527268	7527269	rs72825038	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p24.3	DSP	rs72825038-G	0.905517	1E-8	(236 ms)	0.0549088	[0.036-0.074] unit increase	Affymetrix [10000000] (imputed)	N
642	chr6	7527268	7527269	rs72825038	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	6p24.3	DSP	rs72825038-A	0.09	3E-16		0.94	[0.72-1.16] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
642	chr6	7554838	7554839	rs2744375	27798624	Eppinga RN	2016-10-31	Nat Genet	Identification of genomic loci associated with resting heart rate and shared genetic predictors with all-cause mortality.	Resting heart rate	127,919 European ancestry individuals, 2,478 Asian ancestry individuals, 1,734 Black individuals, 684 Mixed ancestry individuals, 1,436 individuals	130,795 European ancestry individuals	6p24.3	DSP	rs2744375-T	0.16	2E-7		0.2403	[0.15-0.33] unit increase	Affymetrix [19941912] (imputed)	N
642	chr6	7555234	7555235	rs12203720	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6p24.3	C6orf151	rs12203720-?	NR	8E-6	(TAG 56:6)	0.20450944	[0.11-0.29] unit increase	Affymetrix [at least 2500000] (imputed)	N
642	chr6	7555234	7555235	rs12203720	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6p24.3	C6orf151	rs12203720-?	NR	7E-6	(TAG 58:8)	0.20862614	[0.12-0.3] unit increase	Affymetrix [at least 2500000] (imputed)	N
642	chr6	7563231	7563232	rs2076295	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Interstitial lung disease	2,267 European ancestry cases, 467,560 European ancestry controls, 1,046 East Asian ancestry cases, 176,974 East Asian ancestry controls	NA	6p24.3		rs2076295-G	NR	8E-10		0.1549	[0.11-0.2] unit increase	Affymetrix, Illumina [25843170] (imputed)	N
642	chr6	7563231	7563232	rs2076295	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Receptor for advanced glycosylation end products levels	21,758 European ancestry individuals	9,173 individuals	6p24.3		rs2076295-T	0.55	3E-10		0.056	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
642	chr6	7563231	7563232	rs2076295	31710517	Allen RJ	2019-11-11	Am J Respir Crit Care Med	Genome-Wide Association Study of Susceptibility to Idiopathic Pulmonary Fibrosis.	Idiopathic pulmonary fibrosis	2,668 European ancestry cases, 8,591 European ancestry controls	1,456 European ancestry cases, 11,874 European ancestry controls	6p24.3	DSP	rs2076295-G	0.469	3E-30		1.46	[1.37-1.56]	Affymetrix, Illumina [10790934] (imputed)	N
642	chr6	7563231	7563232	rs2076295	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	6p24.3	DSP	rs2076295-T	0.54	2E-7	(conditional on rs1334576)	1.05	[NR]	Affymetrix, Illumina [6224355] (imputed)	N
642	chr6	7563231	7563232	rs2076295	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	6p24.3	DSP	rs2076295-T	0.5497	2E-8		0.0131	[0.0086-0.0176] unit increase	Affymetrix [19819130] (imputed)	N
642	chr6	7563231	7563232	rs2076295	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	6p24.3	DSP	rs2076295-T	0.5497	7E-23		0.0234	[0.019-0.028] unit decrease	Affymetrix [19819130] (imputed)	N
642	chr6	7563231	7563232	rs2076295	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	6p24.3		rs2076295-?	NR	2E-8				NR [~ 8900000] (imputed)	N
642	chr6	7563231	7563232	rs2076295	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	6p24.3		rs2076295-?	NR	1E-23				NR [~ 8900000] (imputed)	N
642	chr6	7563231	7563232	rs2076295	29066090	Allen RJ	2017-10-20	Lancet Respir Med	Genetic variants associated with susceptibility to idiopathic pulmonary fibrosis in people of European ancestry: a genome-wide association study.	Idiopathic pulmonary fibrosis	602 European ancestry cases, 3,366 European ancestry controls	2,158 cases, 5,195 controls	6p24.3	DSP	rs2076295-G	0.463	8E-28		1.44	[1.35-1.54]	Affymetrix [NR] (imputed)	N
642	chr6	7563231	7563232	rs2076295	28166215	Hobbs BD	2017-02-06	Nat Genet	Genetic loci associated with chronic obstructive pulmonary disease overlap with loci for lung function and pulmonary fibrosis.	Chronic obstructive pulmonary disease	11,157 European ancestry cases, 36,699 European ancestry controls, 1,142 African American cases, 2,380 African American controls, 199 Korean ancestry cases, 6,741 Korean ancestry controls, 52 Hispanic cases, 548 Hispanic controls.	12,051 European ancestry cases, 11,111 European ancestry controls, 153 Korean ancestry cases, 205 Korean ancestry controls.	6p24.3	DSP	rs2076295-T	0.55	4E-9		1.09	[1.06,1.12]	Affymetrix, Illumina [NR] (imputed)	N
642	chr6	7563231	7563232	rs2076295	23583980	Fingerlin TE	2013-04-14	Nat Genet	Genome-wide association study identifies multiple susceptibility loci for pulmonary fibrosis.	Interstitial lung disease	1,161 European ancestry cases, 4,683 European ancestry controls	876 European ancestry cases, 1,890 European ancestry controls	6p24.3	DSP	rs2076295-G	0.44	1E-19		1.43	[1.32-1.55]	Illumina [439828]	N
642	chr6	7573454	7573455	rs17143007	34338756	Ahlberg G	2021-07-29	Eur Heart J	Genome-wide association study identifies 18 novel loci associated with left atrial volume and function.	Left atrial active emptying fraction	35,658 British ancestry individuals	NA	6p24.3		rs17143007-?	NR	4E-8		0.706	[0.45-0.96] unit decrease	Affymetrix [10600000] (imputed)	N
642	chr6	7579411	7579412	rs2806225	31620175	Kornilov SA	2019-09-18	Front Genet	Genome-Wide Homozygosity Mapping Reveals Genes Associated With Cognitive Ability in Children From Saudi Arabia.	Numerical cognitive ability	354 Saudi Arabian ancestry children	NA	6p24.3	DSP	rs2806225-?	NR	2E-6		6.16	[3.65-8.67] unit increase	Illumina [285340]	N
643	chr6	7641078	7641079	rs9379121	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6p24.3		rs9379121-?	NR	3E-11				NR [~ 8900000] (imputed)	N
643	chr6	7652716	7652717	rs7739678	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6p24.3	SNRNP48	rs7739678-G	0.089	9E-6	(Fat mass change )	0.03	[NR] kg/y increase	Illumina [899892]	N
643	chr6	7656036	7656037	rs7760212	33654129	Jung HU	2021-03-02	Sci Rep	Identification of genetic loci affecting body mass index through interaction with multiple environmental factors using structured linear mixed model.	BMI x environmental factors (including physical activity) interaction	8,155 Korean ancestry individuals	NA	6p24.3	SNRNP48	rs7760212-?	NR	7E-7				Affymetrix [5908111] (imputed)	N
643	chr6	7656036	7656037	rs7760212	33654129	Jung HU	2021-03-02	Sci Rep	Identification of genetic loci affecting body mass index through interaction with multiple environmental factors using structured linear mixed model.	BMI x  environmental factors (excluding physical activity) interaction	8,155 Korean ancestry individuals	NA	6p24.3	SNRNP48	rs7760212-?	NR	9E-6				Affymetrix [5908111] (imputed)	N
643	chr6	7685066	7685067	rs6597280	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	6p24.3	NR	rs6597280-?	NR	8E-9	(right ventral DC)			NR [9227495] (imputed)	N
643	chr6	7692575	7692576	rs7756651	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p24.3	BMP6	rs7756651-C	0.5143	8E-9		0.0369	[0.024-0.049] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
643	chr6	7695797	7695798	rs932660	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6p24.3	BMP6	rs932660-G	NR	7E-13		0.0229157	[0.017-0.029] unit decrease	Affymetrix [321114] (imputed)	N
643	chr6	7695972	7695973	rs1885486	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	6p24.3	NR	rs1885486-?	NR	6E-6		0.0281404	[0.016-0.04] unit increase	Illumina [34656550] (imputed)	N
643	chr6	7695972	7695973	rs1885486	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	6p24.3		rs1885486-?	NR	3E-10				NR [~ 8900000] (imputed)	N
643	chr6	7695972	7695973	rs1885486	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	6p24.3	BMP6	rs1885486-A	0.48	5E-17		1.18	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
643	chr6	7700987	7700988	rs9406052	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein BMP7	5,356 Icelandic ancestry individuals	NA	6p24.3		rs9406052-T	0.4891	6E-13		0.133064	[0.097-0.169] unit decrease	Illumina [7506463] (imputed)	N
643	chr6	7702658	7702659	rs9379130	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6p24.3	NR	rs9379130-?	NR	7E-13				Affymetrix [~ 8270000] (imputed)	N
643	chr6	7702658	7702659	rs9379130	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	6p24.3	SNRNP48, BMP6	rs9379130-?	NR	2E-12		0.0233753	[0.017-0.03] unit increase	Illumina [27896057] (imputed)	N
643	chr6	7704608	7704609	rs9405350	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p24.3	BMP6	rs9405350-G	NR	2E-11		0.0211047	[0.015-0.027] unit decrease	Affymetrix [323123] (imputed)	N
643	chr6	7706003	7706004	rs6927500	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	6p24.3		rs6927500-A	NR	1E-18		0.0153	[0.012-0.019] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
643	chr6	7706003	7706004	rs6927500	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	6p24.3		rs6927500-A	0.487863	2E-11		0.015163981	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
643	chr6	7706003	7706004	rs6927500	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	6p24.3		rs6927500-?	NR	2E-10				NR [~ 8900000] (imputed)	N
643	chr6	7708630	7708631	rs9392918	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	6p24.3	NR	rs9392918-?	NR	2E-6		0.02983769	[0.018-0.042] unit increase	Illumina [34656550] (imputed)	N
643	chr6	7708630	7708631	rs9392918	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	6p24.3	BMP6	rs9392918-T	0.525	4E-38		0.038	[0.032-0.044] unit decrease	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
643	chr6	7709051	7709052	rs11964049	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p24.3	BMP6	rs11964049-T	NR	2E-11		0.0189605	[0.013-0.024] unit increase	Affymetrix [321016] (imputed)	N
643	chr6	7719064	7719065	rs11243202	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	6p24.3		rs11243202-C	NR	2E-94		0.0282	[0.025-0.031] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
643	chr6	7719064	7719065	rs11243202	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p24.3	BMP6	rs11243202-C	NR	1E-17		0.026286	[0.02-0.032] unit increase	Affymetrix [323123] (imputed)	N
643	chr6	7719064	7719065	rs11243202	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	6p24.3	intergenic	rs11243202-T	0.514	3E-57		0.0302	[0.026-0.034] unit decrease	Affymetrix [18391927] (imputed)	N
643	chr6	7719064	7719065	rs11243202	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	6p24.3	BMP6	rs11243202-C	0.47	6E-6	(conditional on rs1334576)	1.05	[NR]	Affymetrix, Illumina [6224355] (imputed)	N
643	chr6	7719064	7719065	rs11243202	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	6p24.3	NR	rs11243202-?	NR	6E-14	(male)	0.2621	[0.19-0.33] unit increase	Affymetrix [7794483] (imputed)	N
643	chr6	7719064	7719065	rs11243202	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	6p24.3	NR	rs11243202-?	NR	4E-9	(female)	0.14278	[0.095-0.19] unit increase	Affymetrix [7794483] (imputed)	N
643	chr6	7719064	7719065	rs11243202	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	6p24.3	NR	rs11243202-?	NR	1E-21		0.21172	[0.17-0.26] unit increase	Affymetrix [7794483] (imputed)	N
643	chr6	7720058	7720059	rs12198986	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	6p24.3	NR	rs12198986-?	NR	2E-7		0.03316677	[0.021-0.046] unit increase	Illumina [34656550] (imputed)	N
643	chr6	7720058	7720059	rs12198986	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	6p24.3	BMP6	rs12198986-A	0.478	2E-22		0.0227	[0.018-0.027] unit decrease	Affymetrix [19819130] (imputed)	N
643	chr6	7720058	7720059	rs12198986	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	6p24.3	BMP6	rs12198986-A	0.478	1E-19		0.021	[0.016-0.026] unit decrease	Affymetrix [19819130] (imputed)	N
643	chr6	7720058	7720059	rs12198986	18391951	Gudbjartsson DF	2008-04-06	Nat Genet	Many sequence variants affecting diversity of adult human height.	Height	30,968 European ancestry individuals	8,541 European ancestry individuals	6p24.3	BMP6	rs12198986-A	0.5	2E-11		6.8	[4.84-8.76] % s.d. increase	Affymetrix, Illumina [up to 304226]	N
643	chr6	7723961	7723962	rs9392172	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	6p24.3		rs9392172-G	NR	1E-12		0.0135	[0.0098-0.0172] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
643	chr6	7725759	7725760	rs3812163	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	6p24.3	NR	rs3812163-?	NR	3E-7		0.03181753	[0.02-0.044] unit increase	Illumina [34656550] (imputed)	N
643	chr6	7725759	7725760	rs3812163	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	6p24.3		rs3812163-?	NR	4E-9				NR [~ 8900000] (imputed)	N
643	chr6	7725759	7725760	rs3812163	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6p24.3		rs3812163-?	NR	4E-143				NR [~ 8900000] (imputed)	N
643	chr6	7725759	7725760	rs3812163	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	6p24.3	BMP6	rs3812163-A	0.79	1E-7		0.032	[0.018-0.046] unit decrease	Affymetrix, Illumina [2704730] (imputed)	N
643	chr6	7725759	7725760	rs3812163	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	6p24.3	BMP6	rs3812163-A	0.54	1E-23		0.036	[NR] unit decrease	Affymetrix, Illumina [2834208] (imputed)	N
643	chr6	7728162	7728162	rs71542879	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	6p24.3	BMP6	rs71542879-CT	0.4277	4E-8		0.1365	[0.088-0.185] mmHg increase	Affymetrix [NR] (imputed)	N
643	chr6	7728211	7728212	rs1923409	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6p24.3	BMP6	rs1923409-A	NR	6E-13		0.0223075	[0.016-0.028] unit increase	Affymetrix [321114] (imputed)	N
643	chr6	7728211	7728212	rs1923409	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	6p24.3	BMP6	rs1923409-G		2E-10		0.164	unit decrease	Affymetrix [at least 2696785] (imputed)	N
643	chr6	7729613	7729614	rs270417	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p24.3	BMP6	rs270417-C	NR	4E-9		0.0202192	[0.014-0.027] unit decrease	Affymetrix [323123] (imputed)	N
643	chr6	7729613	7729614	rs270417	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p24.3	BMP6	rs270417-T	0.725672	7E-12		0.016886646	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
643	chr6	7729613	7729614	rs270417	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	6p24.3		rs270417-?	NR	1E-8				NR [~ 8900000] (imputed)	N
644	chr6	7736416	7736417	rs199205	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	6p24.3		rs199205-G	0.22	3E-20		9.21	z score increase	Affymetrix [9061022] (imputed)	N
644	chr6	7736416	7736417	rs199205	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	6p24.3		rs199205-G	0.22	9E-13		7.14	z score increase	Affymetrix [9061022] (imputed)	N
644	chr6	7736416	7736417	rs199205	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	6p24.3		rs199205-G	0.22	1E-9		6.07	z score increase	Affymetrix [9061022] (imputed)	N
644	chr6	7736416	7736417	rs199205	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	6p24.3	NR	rs199205-G	0.1902	3E-14				NR [9056863] (imputed)	N
644	chr6	7736416	7736417	rs199205	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	6p24.3	NR	rs199205-G	0.1902	2E-11				NR [9056863] (imputed)	N
644	chr6	7736742	7736743	rs2068361	22419666	Shi M	2012-03-14	Am J Med Genet A	Genome wide study of maternal and parent-of-origin effects on the etiology of orofacial clefts.	Orofacial clefts	1,094 European ancestry triads, 1,277 Asian ancestry triads, 87 triads	NA	6p24.3	BMP6	rs2068361-?	0.23	5E-6	(CL)	1.64	[1.32-2.04	Illumina [NR]	N
644	chr6	7743662	7743663	rs9505270	23049088	Meng W	2012-10-09	Invest Ophthalmol Vis Sci	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		6p24.3	BMP6	rs9505270-?	0.261	4E-7			[NR]	Affymetrix, Illumina [152234]	N
644	chr6	7747231	7747232	rs9505274	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	6p24.3	BMP6	rs9505274-C	0.05972	1E-9		0.02731232	[0.019-0.036] unit increase	Affymetrix [93095623] (imputed)	N
644	chr6	7767740	7767741	rs62386966	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	6p24.3	BMP6	rs62386966-G	0.091267	5E-9		0.022693163	[0.015-0.03] unit increase	Affymetrix [93095623] (imputed)	N
644	chr6	7770510	7770511	rs140013431	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Small cell lung carcinoma	2,664 European ancestry cases,  21,444 European ancestry controls	NA	6p24.3	BMP6	rs140013431-C	0.021230605	1E-6		1.6634338	[1.355454781-2.041390117]	Illumina [10439017] (imputed)	N
644	chr6	7771969	7771970	rs270390	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p24.3	BMP6	rs270390-G	NR	1E-9		0.0191683	[0.013-0.025] unit increase	Affymetrix [323123] (imputed)	N
644	chr6	7786610	7786611	rs5009024	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p24.3	BMP6	rs5009024-G	NR	7E-11		0.0250916	[0.018-0.033] unit increase	Affymetrix [321016] (imputed)	N
644	chr6	7789942	7789943	rs13216391	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6p24.3	NR	rs13216391-?	NR	2E-14				Affymetrix [~ 8270000] (imputed)	N
644	chr6	7789942	7789943	rs13216391	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p24.3	BMP6	rs13216391-A	0.8167	4E-6	(EA,men)	0.031	[0.018-0.044] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
644	chr6	7789942	7789943	rs13216391	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p24.3	BMP6	rs13216391-A	0.8167	3E-9	(EA)	0.028	[0.019-0.037] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
644	chr6	7797839	7797840	rs10498672	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	6p24.3	BMP6	rs10498672-C	0.8227	8E-31		0.0352	[0.029-0.041] unit increase	Affymetrix [19819130] (imputed)	N
644	chr6	7797839	7797840	rs10498672	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	6p24.3	BMP6	rs10498672-C	0.8227	2E-24		0.0309	[0.025-0.037] unit increase	Affymetrix [19819130] (imputed)	N
644	chr6	7797839	7797840	rs10498672	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	6p24.3		rs10498672-?	NR	5E-39				NR [~ 8900000] (imputed)	N
644	chr6	7800305	7800306	rs9942510	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p24.3	BMP6	rs9942510-A	NR	4E-14		0.0317239	[0.023-0.04] unit increase	Affymetrix [323123] (imputed)	N
644	chr6	7801111	7801112	rs6923462	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	6p24.3	BMP6	rs6923462-T	0.8429	3E-24		0.0259	[0.021-0.031] unit decrease	Affymetrix [18391927] (imputed)	N
644	chr6	7801111	7801112	rs6923462	24929828	Loth DW	2014-06-15	Nat Genet	Genome-wide association analysis identifies six new loci associated with forced vital capacity.	Lung function (forced vital capacity)	52,253 European ancestry indiviudals	32,917 European ancestry individuals, 6,070 African American individuals, 849 Hispanic individuals, 8,637 East Asian ancestry individuals	6p24.3	BMP6	rs6923462-T	0.843	6E-13	(EA)	30.883	[22.48-39.29] ml increase	Affymetrix, Illumina [2762059] (imputed)	N
644	chr6	7801610	7801611	rs6924424	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6p24.3	BMP6	rs6924424-G	NR	4E-10		0.0265165	[0.018-0.035] unit increase	Affymetrix [321114] (imputed)	N
644	chr6	7805915	7805916	rs12190551	33332786	Zhang Y	2020-12-15	Spine (Phila Pa 1976)	Genome-Wide Association Analysis Across 16,956 Patients Identifies a Novel Genetic Association Between BMP6, NIPAL1, CNGA1 and Spondylosis.	Spondylosis	4,434 European ancestry cases, 9,416 European ancestry controls	NA	6p24.3	BMP6	rs12190551-C	NR	9E-9		1.034	[1.022- 1.046]	Illumina [6740241] (imputed)	N
644	chr6	7808935	7808936	rs72827097	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TXNDC5	5,362 Icelandic ancestry individuals	NA	6p24.3		rs72827097-T	0.01556	1E-20		0.662318	[0.52-0.8] unit increase	Illumina [7506463] (imputed)	N
644	chr6	7842120	7842121	rs267190	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	6p24.3	NR	rs267190-G	0.577753	4E-8		0.0152314	[0.0097-0.0208] unit increase	Affymetrix [16580851] (imputed)	N
645	chr6	7864588	7864589	rs1122669	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p24.3	NR	rs1122669-G	0.02787	2E-9	(AMBP)	0.02523	NR unit increase	Illumina [1671387] (imputed)	N
645	chr6	7871036	7871037	rs1225927	29555444	Hamer MA	2018-03-16	J Invest Dermatol	Facial Wrinkles in Europeans: a Genome-Wide Association Study.	Facial wrinkles	3,513 north-western European ancestry individuals	599 north-western European ancestry individuals	6p24.3	NR	rs1225927-T	0.75	3E-6		4.69	[NR] z score increase	Illumina [9009554] (imputed)	N
645	chr6	7883467	7883468	rs111331197	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TXNDC5	5,362 Icelandic ancestry individuals	NA	6p24.3		rs111331197-T	0.0145	3E-21		0.700101	[0.55-0.85] unit increase	Illumina [7506463] (imputed)	N
645	chr6	7883467	7883468	rs111331197	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p24.3	TXNDC5	rs111331197-T	0.01	5E-27	(Thioredoxin domain-containing protein 5, TXNDC5.11212.7.3)	1.36	[1.11-1.61] unit increase	Affymetrix [10572788] (imputed)	N
645	chr6	7886904	7886905	rs11962800	32184442	Olafsdottir T	2020-03-17	Commun Biol	Genome-wide association identifies seven loci for pelvic organ prolapse in Iceland and the UK Biobank.	Pelvic organ prolapse	15,010 European ancestry cases, 340,734 European ancestry controls	NA	6p24.3	TXNDC5	rs11962800-A	0.8938	3E-6		1.09901	[1.06-1.14]	Affymetrix, Illumina [37144863] (imputed)	N
645	chr6	7887130	7887131	rs9505301	31636452	Satizabal CL	2019-10-21	Nat Genet	Genetic architecture of subcortical brain structures in 38,851 individuals.	Brainstem volume	28,809 European ancestry individuals	341 South East and East Asian ancestry individuals, 85 African American individuals	6p24.3	NR	rs9505301-A	0.8908	4E-10		6.263	NR z score decrease	Affymetrix, Illumina [NR] (imputed)	N
645	chr6	7899735	7899736	rs182714900	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p24.3	TXNDC5	rs182714900-C	0.985	2E-12	(TXNDC5, 11212_7_3)	0.67713827	[0.49-0.86] unit decrease	Illumina [> 1000000] (imputed)	N
645	chr6	7909819	7909820	rs149742777	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6p24.3		rs149742777-?	NR	8E-16				NR [~ 8900000] (imputed)	N
645	chr6	7913682	7913683	rs12194931	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p24.3	BMP6	rs12194931-G	0.81546875	4E-6	(BMP6, 8459_10_3)	0.1407871	[0.081-0.201] unit decrease	Illumina [> 1000000] (imputed)	N
645	chr6	7958464	7958465	rs2023263	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	6p24.3		rs2023263-?	NR	2E-13				NR [~ 8900000] (imputed)	N
645	chr6	7963931	7963932	rs2757564	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	6p24.3		rs2757564-?	NR	1E-13				NR [~ 8900000] (imputed)	N
645	chr6	7964990	7964990	rs111477297	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	6p24.3		rs111477297-ATAT	NR	5E-11		0.0157	[0.011-0.02] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
645	chr6	7973916	7973917	rs6928832	31586183	Niazi Y	2019-10-04	Mutagenesis	Distinct pathways associated with chromosomal aberration frequency in a cohort exposed to genotoxic compounds compared to general population.	High chromosomal aberration frequency (chromatid type)	333 European and unknown ancestry cases, 533 European and unknown ancestry controls	NA	6p24.3	TXNDC5	rs6928832-?	NR	3E-7		1.69	[1.39-2.07]	Illumina [> 2600000] (imputed)	N
646	chr6	8001116	8001117	rs9328448	23870195	Wojczynski MK	2013-07-19	BMC Med Genet	Genetics of coronary artery calcification among African Americans, a meta-analysis.	Coronary artery calcification	5,823 African American individuals	9,992 European ancestry individuals	6p24.3	MUTED	rs9328448-A	0.75	3E-6	(AA)	0.17	[0.092-0.248] unit increase	Affymetrix, Illumina [up to 2727966] (imputed)	N
646	chr6	8001977	8001978	rs72817857	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p24.3	NR	rs72817857-A	0.157076	1E-13				Affymetrix, Illumina [20825802] (imputed)	N
646	chr6	8002519	8002519	rs147719227	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	6p24.3	BLOC1S5-TXNDC5, TXNDC5	rs147719227-TCTC	0.169966	2E-13		0.02074729	[0.015-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
646	chr6	8002627	8002628	rs12197257	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p24.3	NR	rs12197257-A	0.164952	7E-11				Affymetrix, Illumina [24246363] (imputed)	N
646	chr6	8002658	8002659	rs12197264	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	6p24.3	NR	rs12197264-A	0.169313	6E-15		0.019826	[0.015-0.025] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
646	chr6	8002704	8002705	rs12204273	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	6p24.3	NR	rs12204273-G	0.168371	8E-12		0.016525	[0.012-0.021] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
646	chr6	8115391	8115392	rs1537656	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	6p24.3		rs1537656-?	NR	1E-8				NR [~ 8900000] (imputed)	N
647	chr6	8169799	8169800	rs11964561	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Parasitemia in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	6p24.3	NR	rs11964561-?	NR	8E-6				Affymetrix [5486770] (imputed)	N
647	chr6	8190885	8190886	rs185033288	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TMX3	5,367 Icelandic ancestry individuals	NA	6p24.3		rs185033288-A	0.01644	4E-15		0.560244	[0.42-0.7] unit increase	Illumina [7506463] (imputed)	N
647	chr6	8204412	8204413	rs6928374	30715261	Brouwer WP	2019-02-02	Clin Infect Dis	Genome Wide Association Study Identifies Genetic Variants Associated With Early And Sustained Response To (Peg)Interferon In Chronic Hepatitis B Patients: The GIANT-B Study.	Response to (pegylated) interferon in HBeAg-negative hepatitis B	161 Asian, European, African and other ancestry cases, 253 Asian, European, African and other ancestry controls	NA	6p24.3	EEF1E1, BMP6, BLOC1S5, SLC35B3, OFCC1, TFAP2A, GCNT2, TMEM14C, TMEM14B, SYCP2L, MAK, GCM2, ELOVL2	rs6928374-A	0.5523	3E-6		0.8138	[0.47-1.16] unit decrease	Illumina [8102086] (imputed)	N
647	chr6	8207134	8207135	rs7760150	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6p24.3	MUTED	rs7760150-?	NR	6E-6	(TAG 54:8)	0.18108681	[0.1-0.26] unit decrease	Affymetrix [at least 2500000] (imputed)	N
647	chr6	8226996	8226997	rs13217044	27647854	Sandholm N	2016-09-19	J Am Soc Nephrol	The Genetic Landscape of Renal Complications in Type 1 Diabetes.	Chronic kidney disease (chronic kidney disease vs normal or mildly reduced eGFR) in type 1 diabetes	1,142 European ancestry cases, 113 cases, 2,442 European ancestry controls, 467 controls	2,046 cases, 4,549 controls	6p24.3	NR	rs13217044-A	0.71	4E-6		1.15	[1.07-1.23]	Illumina [NR] (imputed)	N
647	chr6	8228941	8228942	rs6929568	23870195	Wojczynski MK	2013-07-19	BMC Med Genet	Genetics of coronary artery calcification among African Americans, a meta-analysis.	Coronary artery calcification	5,823 African American individuals	9,992 European ancestry individuals	6p24.3	EEF1E1	rs6929568-T	0.49	3E-6	(AA)	0.17	[0.092-0.248] unit decrease	Affymetrix, Illumina [up to 2727966] (imputed)	N
648	chr6	8282532	8282533	rs551980	31598132	Donati G	2019-06-30	Mind Brain Educ	Genome-Wide Association Study of Latent Cognitive Measures in Adolescence: Genetic Overlap With Intelligence and Education.	Working memory	4,611 European ancestry adolescents	NA	6p24.3	SLC35B3	rs551980-?	NR	2E-6		0.102	[0.063-0.141] unit decrease	Illumina [6319684] (imputed)	N
648	chr6	8369678	8369679	rs2153535	25628336	Hromatka BS	2015-01-26	Hum Mol Genet	Genetic variants associated with motion sickness point to roles for inner ear development, neurological processes and glucose homeostasis.	Motion sickness	80,494 European ancestry individuals	NA	6p24.3	MUTED	rs2153535-G	0.48	3E-18		0.046	[0.035-0.056] unit increase	Illumina [7428049] (imputed)	N
648	chr6	8383483	8383484	rs115144339	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	6p24.3	Intergenic	rs115144339-T	0.997	1E-6	(AA)	1.063	NR unit increase	Illumina [NR] (imputed)	N
649	chr6	8400900	8400901	rs6901239	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p24.3	NR	rs6901239-G	0.456	7E-6	(IFNgamma_STAT1_of_CD4p_T)			Illumina [5084123] (imputed)	N
649	chr6	8413411	8413412	rs15300	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Pursuit maintenance gain	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	6p24.3	SLC35B3	rs15300-G	0.0336	2E-7	(EA)			Illumina [4404269] (imputed)	N
649	chr6	8451002	8451003	rs184686040	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	6p24.3	LOC100506207	rs184686040-G	0.998	8E-7	(AA)	1.222	NR unit increase	Illumina [NR] (imputed)	N
650	chr6	8520905	8520906	rs113857308	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Pursuit maintenance gain	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	6p24.3	LOC100506207	rs113857308-T	0.05276	4E-6				Illumina [4404269] (imputed)	N
650	chr6	8520905	8520906	rs113857308	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Pursuit maintenance gain	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	6p24.3	LOC100506207	rs113857308-T	0.03226	5E-7	(EA)			Illumina [4404269] (imputed)	N
650	chr6	8536371	8536372	rs182482821	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	6p24.3	LOC100506207	rs182482821-C	0.999	1E-6	(AA)	1.637	NR unit increase	Illumina [NR] (imputed)	N
651	chr6	8665156	8665157	rs80011011	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	6p24.3	NR	rs80011011-?	NR	3E-7	(Latino)	1.3328	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
651	chr6	8676409	8676410	rs9393058	31263163	Liu CT	2019-07-01	Sci Rep	Genome-wide Association Study of Change in Fasting Glucose over time in 13,807 non-diabetic European Ancestry Individuals.	Fasting glucose change (long-term)	3,669 European ancestry individuals	NA	6p24.3	SLC35B3	rs9393058-A	0.406	5E-6		0.109	[0.062-0.156] unit increase	Affymetrix, Illumina [~ 25000000] (imputed)	N
651	chr6	8690216	8690217	rs1576263	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Photic sneeze reflex	32,446 European ancestry cases, 67,249 European ancestry controls	NA	6p24.3	SLC35B3	rs1576263-?	NR	2E-10		1.0672358	[1.05-1.09]	Illumina [13729857] (imputed)	N
651	chr6	8706520	8706521	rs1028911	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	6p24.3	NR	rs1028911-?	NR	6E-18				Affymetrix [NR]	N
651	chr6	8714314	8714315	rs115936553	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p24.3	NR	rs115936553-G	0.0122	3E-8	(KATNAL2)	0.05099	NR unit increase	Illumina [1671387] (imputed)	N
652	chr6	8790058	8790059	rs12662131	31263163	Liu CT	2019-07-01	Sci Rep	Genome-wide Association Study of Change in Fasting Glucose over time in 13,807 non-diabetic European Ancestry Individuals.	Fasting glucose change (long-term)	3,669 European ancestry individuals	NA	6p24.3	SLC35B3	rs12662131-A	0.285	1E-6		0.143	[0.086-0.2] unit increase	Affymetrix, Illumina [~ 25000000] (imputed)	N
652	chr6	8807047	8807048	rs62393099	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure in major depressive disorder-negative individuals	10,701 European ancestry cases, 39,677 European ancestry controls	NA	6p24.3	NR	rs62393099-C	0.9689499	7E-6		1.1286682	[1.07-1.18]	Affymetrix [7791636] (imputed)	N
652	chr6	8816494	8816495	rs185751587	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	6p24.3	Intergenic	rs185751587-A	0.999	8E-7	(AA)	1.575	NR unit increase	Illumina [NR] (imputed)	N
652	chr6	8823905	8823906	rs9379245	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p24.3	NR	rs9379245-G	0.05	4E-6	(IFNgamma_STAT1_of_CD8p_T)			Illumina [5084123] (imputed)	N
652	chr6	8864865	8864866	rs533950411	33482370	Kim SK	2021-01-19	J Shoulder Elbow Surg	A Genome Wide Association Study For Shoulder Impingement and Rotator Cuff Disease.	Shoulder impingement	3,864 European ancestry cases, 208,258 European ancestry controls	NA	6p24.3	LOC100506207	rs533950411-T	0.0013	3E-8		3.59	[2.28-5.65]	Affymetrix [17556449] (imputed)	N
652	chr6	8871887	8871888	rs76301696	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p24.3	NR	rs76301696-A	0.01045	4E-10	(F2)	0.03479	NR unit increase	Illumina [1671387] (imputed)	N
652	chr6	8893180	8893181	rs6597371	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	6p24.3	NR	rs6597371-C	0.119727	2E-10		0.0301206	[0.021-0.039] unit decrease	NR [19129689] (imputed)	N
652	chr6	8905191	8905192	rs145442173	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Monokine induced by gamma interferon levels	3,685 Finnish ancestry individuals	NA	6p24.3	NR	rs145442173-C	NR	4E-6		0.6029	[0.35-0.86] SD units decrease	NR [10700000] (imputed)	N
653	chr6	8998810	8998811	rs2064197	25524916	Palmer ND	2014-12-18	Diabetes	Genetic Variants Associated With Quantitative Glucose Homeostasis Traits Translate to Type 2 Diabetes in Mexican Americans: The GUARDIAN (Genetics Underlying Diabetes in Hispanics) Consortium.	Glucose homeostasis traits	up to 4,176 Mexican American individuals	NA	6p24.3	SLC35B3, TFAP2A	rs2064197-?		7E-6	(SG)	0.19	[0.11-0.27] unit decrease	Illumina [693128]	N
653	chr6	9000422	9000423	rs11243290	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		6p24.3	NR	rs11243290-G	NR	4E-8		0.0341437	NR unit increase	NR [NR] (imputed)	N
653	chr6	9011061	9011062	rs2143017	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	6p24.3		rs2143017-?	NR	6E-27				NR [~ 8900000] (imputed)	N
653	chr6	9016097	9016098	rs430329	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	6p24.3	NR	rs430329-A	0.492058	3E-44		0.0431672	[0.037-0.049] unit decrease	NR [19129689] (imputed)	N
653	chr6	9017511	9017512	rs74423208	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Monokine induced by gamma interferon levels	3,685 Finnish ancestry individuals	NA	6p24.3	NR	rs74423208-G	NR	7E-6		0.6024	[0.34-0.86] SD units increase	NR [10700000] (imputed)	N
653	chr6	9030335	9030336	rs438259	20732626	Mick E	2010-05-14	J Am Acad Child Adolesc Psychiatry	Family-based genome-wide association scan of attention-deficit/hyperactivity disorder.	Attention deficit hyperactivity disorder	735 trios from 732 families	NA	6p24.3	LOC389365	rs438259-?	0.28	4E-6		1.49	[NR]	Illumina [835136]	N
654	chr6	9082921	9082922	rs17145272	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p24.3	NR	rs17145272-T	0.02091	7E-9	(GALE)	0.1358	NR unit decrease	Illumina [1671387] (imputed)	N
654	chr6	9116356	9116357	rs2146959	30753327	Hishida A	2019-02-08	Carcinogenesis	GWAS analysis reveals a significant contribution of PSCA to the risk of Heliobacter pylori-induced gastric atrophy.	Pepsinogen I/II ratio	3,385 Japanese ancestry individuals	2,885 Japanese ancestry individuals	6p24.3	Intergenic	rs2146959-G	0.062	2E-13		0.193	[0.11-0.28] unit decrease	Illumina [575802]	N
654	chr6	9116356	9116357	rs2146959	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	6p24.3		rs2146959-?	NR	3E-16				NR [~ 8900000] (imputed)	N
654	chr6	9116356	9116357	rs2146959	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	6p24.3	NR	rs2146959-G	0.427376	5E-21		0.0294434	[0.023-0.036] unit decrease	NR [19129689] (imputed)	N
655	chr6	9207716	9207717	rs145698325	31123309	Rayner C	2019-05-23	Transl Psychiatry	A genome-wide association meta-analysis of prognostic outcomes following cognitive behavioural therapy in individuals with anxiety and depressive disorders.	Response to cognitive-behavioural therapy in major depressive disorder	832 adult cases	NA	6p24.3	intergenic	rs145698325-T	0.08	3E-6		0.45	[0.25-0.65] unit decrease	Illumina [at least 4710000] (imputed)	N
655	chr6	9291882	9291883	rs72820264	28468790	Agopian AJ	2017-06-01	Circ Cardiovasc Genet	Genome-Wide Association Studies and Meta-Analyses for Congenital Heart Defects.	Left ventricular obstructive tract defect (inherited effect)	247 European ancestry trios, 70 non-European ancestry trios, 192 European and other ancestry trios	NA	6p24.3	intergenic	rs72820264-?	NR	2E-8		2.048016	[1.594315-2.63083]	Illumina [at least 4483243] (imputed)	N
655	chr6	9304648	9304649	rs78576899	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		6p24.3	NR	rs78576899-T	NR	6E-9		0.0688728	NR unit increase	NR [NR] (imputed)	N
656	chr6	9320305	9320306	rs56409046	28468790	Agopian AJ	2017-06-01	Circ Cardiovasc Genet	Genome-Wide Association Studies and Meta-Analyses for Congenital Heart Defects.	Congenital heart disease (inherited effect)	1,119 European ancestry trios, 406 European ancestry cases, 2,976 European ancestry controls, 415 non-European ancestry trios	NA	6p24.3	intergenic	rs56409046-?	NR	3E-7		1.338672	[1.197921-1.49596]	Illumina [at least 4756772] (imputed)	N
656	chr6	9321307	9321308	rs12206890	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	6p24.3		rs12206890-?	NR	4E-61				NR [~ 8900000] (imputed)	N
656	chr6	9327555	9327556	rs9357047	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		6p24.3	NR	rs9357047-C	NR	3E-35		0.0770721	NR unit increase	NR [NR] (imputed)	N
656	chr6	9327555	9327556	rs9357047	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Male-pattern baldness	9,009 European ancestry cases, 8,491 European ancestry controls	NA	6p24.3	SLC35B3, OFCC1	rs9357047-?	NR	3E-13		1.1806375	[1.13-1.23]	Illumina [13436641] (imputed)	N
656	chr6	9329578	9329579	rs1590534	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	6p24.3	NR	rs1590534-A	0.440881	8E-177		0.0934765	[0.087-0.1] unit increase	NR [19129689] (imputed)	N
656	chr6	9333584	9333584	rs34624408	29146897	Pirastu N	2017-11-17	Nat Commun	GWAS for male-pattern baldness identifies 71 susceptibility loci explaining 38% of the risk.	Male-pattern baldness	25,662 British ancestry cases, 17,928 British ancestry controls	13,367 European ancestry cases, 11,851 European ancestry controls, 3,436 cases, 2,435 controls	6p24.3	OFCC1	rs34624408-T	NR	9E-29		0.157266	[0.13-0.18] unit increase	Affymetrix [27512692] (imputed)	N
656	chr6	9368517	9368518	rs2104455	30487263	Pollack S	2018-11-28	Diabetes	Multiethnic Genome-wide Association Study of Diabetic Retinopathy using Liability Threshold Modeling of Duration of Diabetes and Glycemic Control.	Diabetic retinopathy (all NPDR and PDR)	1,079 European ancestry cases, 1,970 European ancestry controls, 911 African American cases, 941 African American controls	7,178 East Asian ancestry cases, 6,525 East Asian ancestry controls, 214 South East Asian ancestry cases, 557 South East Asian ancestry controls, 315 South Asian ancestry cases, 669 South Asian ancestry controls, 8,205 European ancestry cases, 7,713 European ancestry controls, 1,470 Hispanic cases, 1,240 Hispanic controls	6p24.3	NR	rs2104455-?	NR	1E-7	(AA)	1.57	[NR]	Affymetrix, Illumina [NR] (imputed)	N
656	chr6	9389311	9389312	rs2294736	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		6p24.3	NR	rs2294736-C	NR	3E-8		0.0755709	NR unit increase	NR [NR] (imputed)	N
656	chr6	9393711	9393712	rs214438	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Hippocampal volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	6p24.3	NR	rs214438-?		3E-6				Illumina [4322238] (imputed)	N
656	chr6	9420098	9420099	rs6457977	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		6p24.3	NR	rs6457977-A	NR	2E-15		0.0633864	NR unit increase	NR [NR] (imputed)	N
656	chr6	9427515	9427516	rs9470710	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	6p24.3	NR	rs9470710-?	NR	1E-6				Affymetrix [NR]	N
657	chr6	9440885	9440886	rs9380830	28272467	Heilmann-Heimbach S	2017-03-08	Nat Commun	Meta-analysis identifies novel risk loci and yields systematic insights into the biology of male-pattern baldness.	Male-pattern baldness	10,846 European ancestry cases, 11,672 European ancestry controls	NA	6p24.3		rs9380830-G	0.05	4E-15		0.36	[0.26-0.46] unit decrease	Affymetrix, Illumina [8004650] (imputed)	N
657	chr6	9445999	9446000	rs148387718	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	6p24.3	OFCC1	rs148387718-?	NR	2E-11	(African)			Affymetrix, Illumina [18800000] (imputed)	N
657	chr6	9445999	9446000	rs148387718	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (1df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	6p24.3	OFCC1	rs148387718-T	0.0133	3E-8	(African)	7.841	unit decrease	Affymetrix, Illumina [18800000] (imputed)	N
657	chr6	9450005	9450006	rs9394647	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	6p24.3	NR	rs9394647-T	0.385542	4E-79		0.0680461	[0.061-0.075] unit decrease	NR [19129689] (imputed)	N
657	chr6	9451196	9451197	rs10484246	17903295	Lunetta KL	2007-09-19	BMC Med Genet	Genetic correlates of longevity and selected age-related phenotypes: a genome-wide association study in the Framingham Study.	Morbidity-free survival	558 individuals	NA	6p24.3	intergenic	rs10484246-?	NR	8E-8				Affymetrix [70897]	N
657	chr6	9464546	9464547	rs79032435	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		6p24.3	NR	rs79032435-T	NR	1E-16		0.124394	NR unit decrease	NR [NR] (imputed)	N
657	chr6	9469237	9469238	rs9381107	28232668	Yu Y	2017-02-24	Nat Commun	Genome-wide analyses of non-syndromic cleft lip with palate identify 14 novel loci and genetic heterogeneity.	Nonsyndromic cleft lip with cleft palate	2,033 Han Chinese ancestry cases, 4,051 Han Chinese ancestry controls	1,346 Han Chinese ancestry cases, 4,542 Han Chinese ancestry controls	6p24.3	LOC100506207	rs9381107-G	0.63	3E-9		1.2048193	[NR]	Illumina [803202]	N
657	chr6	9481371	9481372	rs2876167	29146897	Pirastu N	2017-11-17	Nat Commun	GWAS for male-pattern baldness identifies 71 susceptibility loci explaining 38% of the risk.	Male-pattern baldness	25,662 British ancestry cases, 17,928 British ancestry controls	13,367 European ancestry cases, 11,851 European ancestry controls, 3,436 cases, 2,435 controls	6p24.3	OFCC1	rs2876167-G	NR	2E-10		0.0925893	[0.064-0.121] unit decrease	Affymetrix [27512692] (imputed)	N
657	chr6	9489951	9489952	rs7739844	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	6p24.3	NR	rs7739844-C	0.350177	7E-13		0.0259684	[0.019-0.033] unit decrease	NR [19129689] (imputed)	N
657	chr6	9509255	9509256	rs114190032	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		6p24.3	NR	rs114190032-T	NR	3E-9		0.0370266	NR unit decrease	NR [NR] (imputed)	N
657	chr6	9510029	9510030	rs9463175	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	6p24.3		rs9463175-T	NR	1E-9		0.013	[0.0089-0.0171] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
657	chr6	9510029	9510030	rs9463175	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	6p24.3		rs9463175-?	NR	2E-8				NR [~ 8900000] (imputed)	N
657	chr6	9520002	9520003	rs17797603	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	6p24.3		rs17797603-?	NR	9E-20				NR [~ 8900000] (imputed)	N
657	chr6	9530363	9530364	rs1040520	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	6p24.3		rs1040520-G	0.607447	4E-9		0.013151368	[0.0088-0.0175] unit decrease	Affymetrix [93095623] (imputed)	N
657	chr6	9530363	9530364	rs1040520	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	6p24.3	NR	rs1040520-G	0.605848	4E-11		0.012463	[0.0088-0.0162] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
657	chr6	9531803	9531803	rs397770270	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	6p24.3		rs397770270-CAT	NR	3E-10		0.0134	[0.0093-0.0175] unit decrease	Affymetrix, Illumina [20538307] (imputed)	N
657	chr6	9538123	9538124	rs139092879	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		6p24.3	OFCC1	rs139092879-A	NR	3E-13		0.165413	NR unit increase	NR [NR] (imputed)	N
657	chr6	9547596	9547597	rs2206556	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	6p24.3		rs2206556-?	NR	5E-11				NR [~ 8900000] (imputed)	N
658	chr6	9576202	9576203	rs4715321	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	6p24.3	NR	rs4715321-T	0.493548	3E-9		0.0191966	[0.013-0.026] unit decrease	NR [19129689] (imputed)	N
658	chr6	9589918	9589920	rs201794747	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		6p24.3	NR	rs201794747-G	NR	2E-8		0.0808518	NR unit increase	NR [NR] (imputed)	N
658	chr6	9605187	9605188	rs855256	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		6p24.3	OFCC1	rs855256-T	NR	1E-21		0.083116	NR unit increase	NR [NR] (imputed)	N
658	chr6	9608886	9608887	rs855250	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	6p24.3		rs855250-?	NR	3E-47				NR [~ 8900000] (imputed)	N
658	chr6	9673961	9673964	rs55885134	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		6p24.3	OFCC1	rs55885134-G	NR	3E-8		0.0374	NR unit decrease	NR [NR] (imputed)	N
658	chr6	9677394	9677395	rs2149150	29146897	Pirastu N	2017-11-17	Nat Commun	GWAS for male-pattern baldness identifies 71 susceptibility loci explaining 38% of the risk.	Male-pattern baldness	25,662 British ancestry cases, 17,928 British ancestry controls	13,367 European ancestry cases, 11,851 European ancestry controls, 3,436 cases, 2,435 controls	6p24.3	OFCC1	rs2149150-C	NR	3E-16		0.163669	[0.12-0.2] unit increase	Affymetrix [27512692] (imputed)	N
658	chr6	9690842	9690843	rs16892494	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	6p24.3	NR	rs16892494-G	0.13734	6E-75		0.0830417	[0.074-0.092] unit increase	NR [19129689] (imputed)	N
659	chr6	9725269	9725270	rs6939066	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		6p24.3	OFCC1	rs6939066-T	NR	1E-9		0.0387415	NR unit decrease	NR [NR] (imputed)	N
659	chr6	9807751	9807752	rs9464830	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6p24.3	TFAP2A	rs9464830-?	NR	2E-7	(cyclic adenosine monophosphate)	0.22085808	[0.14-0.3] unit decrease	Affymetrix [at least 2500000] (imputed)	N
660	chr6	9843004	9843005	rs62405006	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	6p24.3		rs62405006-?	NR	6E-13				Affymetrix [NR] (imputed)	N
660	chr6	9851400	9851401	rs111921861	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	6p24.3	OFCC1	rs111921861-C	NR	2E-7	(sleep efficiency)	6.605	[4.14-9.07] unit decrease	Affymetrix [7141204] (imputed)	N
660	chr6	9853918	9853919	rs4716055	22479202	Dastani Z	2012-03-29	PLoS Genet	Novel loci for adiponectin levels and their influence on type 2 diabetes and metabolic traits: a multi-ethnic meta-analysis of 45,891 individuals.	Adiponectin levels	29,347 European ancestry individuals	10,536 European ancestry individuals	6p24.3	NR	rs4716055-T	NR	4E-6		0.031	[NR] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
660	chr6	9880702	9880703	rs186139562	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Yeast infection	52,218 European ancestry cases, 10,235 European ancestry controls	NA	6p24.3	NR	rs186139562-?	NR	2E-6		0.3588	[0.21-0.51] unit increase	Illumina [at least 560000] (imputed)	N
660	chr6	9894160	9894160	rs532870767	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 86)	19,670 European ancestry individuals	NA	6p24.3		rs532870767-?,rs532870767-?	NR	5E-8				NR [9705931] (imputed)	N
660	chr6	9894160	9894160	rs532870767	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 86)	19,670 European ancestry individuals	NA	6p24.3		rs532870767-?,rs532870767-?	NR	5E-8				NR [9705931] (imputed)	N
660	chr6	9894432	9894433	rs12662085	34288885	Lin WD	2021-07-01	Eur J Endocrinol	Genetic factors of idiopathic central precocious puberty and their polygenic risk in early puberty.	Idiopathic central precocious puberty	256 Han Chinese ancestry cases, 118 Han Chinese ancestry controls	65 Han Chinese ancestry cases, 30 Han Chinese ancestry controls	6p24.3		rs12662085-C	NR	6E-8		7.91	[3.75-16.68]	Affymetrix [NR] (imputed)	N
660	chr6	9914366	9914367	rs73720625	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	6p24.3	OFCC1	rs73720625-T	NR	8E-6	(sleep duration)	0.5341	[0.3-0.77] unit decrease	Affymetrix [7141204] (imputed)	N
660	chr6	9937359	9937360	rs149747749	24159190	Seppala I	2013-10-24	Eur Heart J	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Asymmetrical dimethylarginine levels	5110 European ancestry individuals	NA	6p24.3	intergenic	rs149747749-A	0.005	8E-6		0.645	[0.36-0.93] unit decrease	Affymetrix, Illumina [10085758] (imputed)	N
660	chr6	9941222	9941223	rs9396752	27612410	van der Plaat DA	2016-09-06	J Allergy Clin Immunol	Genome-wide association study on the FEV1/FVC ratio in never-smokers identifies HHIP and FAM13A.	Pre bronchodilator FEV1/FVC ratio in never-smokers	5,070 European ancestry individuals	1,966 European ancestry individuals	6p24.3	OFCC1	rs9396752-A	0.26	4E-7		0.49	[0.25-0.73] % decrease	Illumina [227981]	N
661	chr6	9993736	9993737	rs116201121	24159190	Seppala I	2013-10-24	Eur Heart J	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Serum dimethylarginine levels (asymmetric/symetric ratio)	5110 European ancestry individuals	NA	6p24.3	NR	rs116201121-A	0.011	1E-6		0.521	[0.31-0.73] unit decrease	Affymetrix, Illumina [10085758] (imputed)	N
661	chr6	9994388	9994389	rs201260	25387704	Malone SM	2014-12-01	Psychophysiology	Heritability and molecular-genetic basis of resting EEG activity: a genome-wide association study.	Electroencephalogram traits	2,383 European ancestry adolescents and 1,643 European ancestry adults from 1,613 families	NA	6p24.3	OFCC1	rs201260-?	NR	4E-6	(Alpha power, Cz)	0.099	[0.058-0.14] unit decrease	Illumina [527829]	N
661	chr6	10010211	10010212	rs182934436	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Yeast infection	52,218 European ancestry cases, 10,235 European ancestry controls	NA	6p24.3	NR	rs182934436-?	NR	2E-7		0.402	[0.25-0.55] unit increase	Illumina [at least 560000] (imputed)	N
661	chr6	10013327	10013328	rs6906329	34226506	Cox J	2021-06-29	Transl Psychiatry	Genome-wide association study of stimulant dependence.	Stimulant dependence	393 European ancestry cases, 5,287 European ancestry controls, 155 African American or Afro-Caribbean cases, 5,603 African American or Afro-Caribbean controls	532 European ancestry cases, 7,103 European ancestry controls, 53 African American or Afro-Caribbean cases, 3,299 African American or Afro-Caribbean controls	6p24.3		rs6906329-T	NR	2E-6		0.42		Illumina [NR] (imputed)	N
661	chr6	10013327	10013328	rs6906329	34226506	Cox J	2021-06-29	Transl Psychiatry	Genome-wide association study of stimulant dependence.	Stimulant dependence	155 African American or Afro-Caribbean cases, 5,603 African American or Afro-Caribbean controls	53 African American or Afro-Caribbean cases, 3,299 African American or Afro-Caribbean controls	6p24.3		rs6906329-T	NR	2E-6		0.45		Illumina [NR] (imputed)	N
661	chr6	10015907	10015908	rs12214497	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	6p24.3	OFCC1	rs12214497-G	0.654505	9E-13		0.0105167	[0.0076-0.0134] unit increase	Affymetrix [12370749]	N
661	chr6	10028825	10028826	rs67612840	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	35,422 individuals (>=25 years old)	NA	6p24.3		rs67612840-A	NR	8E-7		0.0117	[0.0074-0.016] mm decrease	Affymetrix, Illumina [8936601] (imputed)	N
661	chr6	10028825	10028826	rs67612840	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	29,580 European ancestry individuals, 14,462 Asian ancestry individuals	88,218 European ancestry individuals	6p24.3		rs67612840-A	0.27	4E-35		0.014	mm decrease	Affymetrix, Illumina [8936601] (imputed)	N
661	chr6	10028825	10028826	rs67612840	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	29,580 European ancestry individuals	NA	6p24.3		rs67612840-A	0.28	3E-6		0.012	mm decrease	Affymetrix, Illumina [8936601] (imputed)	N
661	chr6	10036082	10036083	rs2327222	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	6p24.3	NR	rs2327222-T		3E-8		0.07	[0.05-0.09] unit increase	NR [NR]	N
661	chr6	10052588	10052589	rs855391	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	6p24.3		rs855391-?	NR	2E-9				NR [~ 8900000] (imputed)	N
662	chr6	10102216	10102217	rs2876189	25778476	Jun G	2015-03-17	Mol Psychiatry	A novel Alzheimer disease locus located near the gene encoding tau protein.	Alzheimer's disease in APOE e4+ carriers	10,352 cases, 9,207 controls	1,250 European ancestry cases, 536 European ancestry controls	6p24.3	OFCC1, RPL7AP36	rs2876189-G	0.31	6E-6		1.14	[1.08-1.21]	NR [NR]	N
662	chr6	10112579	10112580	rs1209347	30108155	Hebbar P	2018-08-14	J Lipid Res	Genome-wide association study identifies novel recessive genetic variants for high TGs in an Arab population.	Triglyceride levels	1,353 Kuwaiti ancestry individuals	1,176 Kuwaiti ancestry individuals	6p24.3	LOC107983965, OFCC1	rs1209347-G	NR	4E-6		4.605	z-score increase	Illumina [632375]	N
662	chr6	10163967	10163968	rs13195786	20705733	O'Seaghdha CM	2010-08-12	Hum Mol Genet	Common variants in the calcium-sensing receptor gene are associated with total serum calcium levels.	Calcium levels	20,611 European ancestry individuals	NA	6p24.3	intergenic	rs13195786-?	NR	7E-6		0.03	[NR] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
662	chr6	10167556	10167557	rs6902652	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	6p24.3	intergenic	rs6902652-G	0.9546	2E-6		1.1421393		NR [9372253] (imputed)	N
662	chr6	10176035	10176036	rs12210761	23377640	GENDEP Investigators	2013-02-01	Am J Psychiatry	Common genetic variation and antidepressant efficacy in major depressive disorder: a meta-analysis of three genome-wide pharmacogenetic studies.	Major depressive disorder	Up to 2,256 European ancestry cases	NA	6p24.3	intergenic	rs12210761-A	0.0676606	6E-6	(partial response - SSRI treated - 2 weeks)	2.4458	[2.06-2.83]	Affymetrix, Illumina [1200000] (imputed)	N
662	chr6	10178093	10178094	rs9465426	31206233	Real LM	2019-06-17	Liver Int	A genome-wide association study in low susceptibility to hepatitis C virus infection (GEHEP012 Study).	Low susceptibility to hepatitis C infection	27 Spanish ancestry uninfected high-risk individuals, 804 Spanish ancestry infected individuals	NA	6p24.3	OFCC1	rs9465426-C	0.1486	6E-6		3.938	[2.25-6.89]	Affymetrix [7675561] (imputed)	N
662	chr6	10186331	10186332	rs141173114	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		6p24.3	NR	rs141173114-T	NR	3E-9		0.172801	NR unit decrease	NR [NR] (imputed)	N
662	chr6	10195422	10195423	rs189431351	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	6p24.3	MRDS1	rs189431351-T	0.999	1E-6	(AA)	0.359	unit increase	Illumina [NR] (imputed)	N
662	chr6	10213659	10213660	rs190801949	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	6p24.3	Intergenic	rs190801949-G	0.998	4E-6	(AA)	0.286	unit increase	Illumina [NR] (imputed)	N
662	chr6	10220441	10220442	rs148661203	30850646	Tziotzios C	2019-03-08	Nat Commun	Genome-wide association study in frontal fibrosing alopecia identifies four susceptibility loci including HLA-B*07:02.	Frontal fibrosing alopecia	1,016 European ancestry cases, 4,145 European ancestry controls		6p24.3	NR	rs148661203-T	0.007	9E-6		2.96	[1.83-4.78]	Illumina [~ 8000000] (imputed)	N
663	chr6	10226232	10226233	rs11759950	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		6p24.3	NR	rs11759950-T	NR	3E-8		0.0466873	NR unit decrease	NR [NR] (imputed)	N
663	chr6	10233934	10233935	rs9465627	28334935	Raffield LM	2017-05-15	Hum Mol Genet	Genome-wide association study of iron traits and relation to diabetes in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL): potential genomic intersection of iron and glucose regulation?	Iron status biomarkers (ferritin levels)	12,375 Hispanic/Latino individuals	NA	6p24.3	LOC100506207, TFAP2A	rs9465627-T	NR	3E-7		0.195	[0.12-0.27] unit increase	Illumina [27700000] (imputed)	N
663	chr6	10236774	10236775	rs72834043	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	6p24.3	NR	rs72834043-G	0.215946	4E-15		0.0291228	[0.022-0.036] unit decrease	NR [19129689] (imputed)	N
663	chr6	10250209	10250210	rs12191126	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p24.3	NR	rs12191126-A	0.03833	2E-8	(TNC)	0.03741	NR unit increase	Illumina [1671387] (imputed)	N
663	chr6	10270148	10270149	rs6918084	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Lateral ventricle temporal horn volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	6p24.3	NR	rs6918084-?		3E-6				Illumina [4322238] (imputed)	N
663	chr6	10271129	10271130	rs12210772	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 2, vertical position of orbits relative to midface)	2,187 European ancestry individuals	NA	6p24.3	NR	rs12210772-A	0.08001	5E-6		0.2579	[0.15-0.37] unit increase	Illumina [10677593] (imputed)	N
663	chr6	10296335	10296336	rs1333657	28054174	Leslie EJ	2017-01-04	Hum Genet	Genome-wide meta-analyses of nonsyndromic orofacial clefts identify novel associations between FOXE1 and all orofacial clefts, and TP63 and cleft lip with or without cleft palate.	Orofacial clefts	83 Asian ancestry cases, 1,445 Asian ancestry case-parent trios, 161 Asian ancestry controls, 208 European ancestry cases, 1,284 European ancestry case-parent trios, 835 European ancestry controls, 610 Latino or African cases, 663 Latino or African case-parent trios, 704 Latino or African controls, 35 case-parent trios.	NA	6p24.3	intergenic	rs1333657-?	NR	8E-6	(EA)	1.29	[1.16-1.42]	Illumina [6090031] (imputed)	N
664	chr6	10391103	10391103	rs151137431	28087736	Ludwig KU	2017-01-13	Hum Mol Genet	Imputation of orofacial clefting data identifies novel risk loci and sheds light on the genetic background of cleft lip ? cleft palate and cleft palate only.	Nonsyndromic cleft lip with or without cleft palate	399 European ancestry cases, 1,318 European ancestry controls, 666 European ancestry trios, 795 Asian trios	224 European ancestry cases, 921 European ancestry controls, 152 Mayan cases, 323 Mayan controls, 198 Middle Eastern cases, 391 Middle Eastern controls	6p24.3	NR	rs151137431-?		9E-6	(EA)			NR [8012124] (imputed)	N
664	chr6	10403649	10403650	rs3798696	24529757	Xie T	2014-01-17	Neurobiol Aging	Genome-wide association study combining pathway analysis for typical sporadic amyotrophic lateral sclerosis in Chinese Han populations.	Amyotrophic lateral sclerosis (sporadic)	250 Han Chinese ancestry cases, 250 Han Chinese ancestry controls	NA	6p24.3	TFAP2A	rs3798696-?		3E-6				Illumina [859311]	N
664	chr6	10404195	10404196	rs303051	30557369	Yodsurang V	2018-12-17	PLoS One	Genome-wide association study (GWAS) of ovarian cancer in Japanese predicted regulatory variants in 22q13.1.	Ovarian cancer	681 Japanese ancestry cases, 17,492 Japanese ancestry controls	NA	6p24.3	TFAP2A	rs303051-A	0.3947	6E-6		1.2886598	[1.15-1.44]	Illumina [7521072] (imputed)	N
664	chr6	10415005	10415006	rs654351	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Squamous cell lung carcinoma	7,426 European ancestry cases, 55,627 European ancestry controls	NA	6p24.3	TFAP2A-AS1	rs654351-G	0.434686448	2E-6		1.101157	[1.058592798-1.145432464]	Illumina [10439017] (imputed)	N
664	chr6	10416133	10416134	rs1051512	34642315	Ferreiro-Iglesias A	2021-10-12	Nat Commun	Germline determinants of humoral immune response to HPV-16 protect against oropharyngeal cancer.	Oropharynx cancer and human papilloma virus 16 negative oropharyngeal cancer	2,359 European ancestry cases, 565 European ancestry controls	NA	6p24.3		rs1051512-T	NR	4E-6		1.7163		Illumina [up to 7574753] (imputed)	N
664	chr6	10416133	10416134	rs1051512	34642315	Ferreiro-Iglesias A	2021-10-12	Nat Commun	Germline determinants of humoral immune response to HPV-16 protect against oropharyngeal cancer.	Human papilloma virus 16 negative oropharyngeal cancer	565 European ancestry cases, 5,256 European ancestry controls	NA	6p24.3		rs1051512-T	NR	1E-6		2.44		Illumina [7574753] (imputed)	N
664	chr6	10432624	10432625	rs201877628	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	6p24.3	NR	rs201877628-?	NR	5E-6		10514.731	NR unit decrease	Illumina [2379855]	N
664	chr6	10456705	10456706	rs9348512	23544012	Gaudet MM	2013-03-27	PLoS Genet	Identification of a BRCA2-specific modifier locus at 6p24 related to breast cancer risk.	Breast cancer in BRCA2 mutation carriers	4,330 European ancestry affected women, 3,881 European ancestry unaffected women	NA	6p24.3	C6orf218, TFAP2A	rs9348512-C	0.65	4E-8		1.18	[1.11-1.25]	Illumina [at least 200908] (imputed)	N
664	chr6	10460737	10460738	rs9348516	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6p24.3	TFAP2A	rs9348516-?	NR	4E-7	(allantoin)	0.18477283	[0.11-0.26] unit decrease	Affymetrix [at least 2500000] (imputed)	N
665	chr6	10505906	10505910	rs35767545	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	6p24.3	NR	rs35767545-T	NR	1E-9		0.0213	[0.014-0.028] unit decrease	Affymetrix [9000000] (imputed)	N
665	chr6	10518349	10518350	rs504117	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	6p24.3	NR	rs504117-A	0.522119	2E-14		0.014228	[0.011-0.018] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
665	chr6	10518349	10518350	rs504117	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	6p24.3		rs504117-?	NR	8E-8				NR [~ 8900000] (imputed)	N
665	chr6	10519889	10519890	rs707794	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	6p24.3		rs707794-A	NR	3E-28		0.0232	[0.019-0.027] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
665	chr6	10519889	10519890	rs707794	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p24.3		rs707794-C	0.47	1E-18				Affymetrix [10369434] (imputed)	N
665	chr6	10519889	10519890	rs707794	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	6p24.3	GCNT2	rs707794-C	0.470037	3E-44		0.030983908	[0.027-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
665	chr6	10519889	10519890	rs707794	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	6p24.3	NR	rs707794-A	0.532063	8E-59		0.030445	[0.027-0.034] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
665	chr6	10526372	10526373	rs605783	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p24.3	NR	rs605783-A	0.576137	2E-13				Affymetrix, Illumina [24649327] (imputed)	N
665	chr6	10526372	10526373	rs605783	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p24.3	NR	rs605783-A	0.565753	4E-59				Affymetrix, Illumina [23467995] (imputed)	N
665	chr6	10526372	10526373	rs605783	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p24.3	NR	rs605783-A	0.565641	2E-11				Affymetrix, Illumina [23472807] (imputed)	N
665	chr6	10526372	10526373	rs605783	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	6p24.3	GCNT2	rs605783-A	0.5326	8E-10		0.02191894	[0.015-0.029] unit decrease	Affymetrix [~ 2500000] (imputed)	N
665	chr6	10526372	10526373	rs605783	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	6p24.3	GCNT2	rs605783-A	0.5326	4E-18		0.03104518	[0.024-0.038] unit decrease	Affymetrix [~ 2500000] (imputed)	N
665	chr6	10527952	10527952	rs373960822	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	6p24.3		rs373960822-ATGTGTGTGTG	NR	6E-9		0.022	[0.015-0.029] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
665	chr6	10533462	10533463	rs809479	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	6p24.3	GCNT2	rs809479-C	0.534036	2E-23		0.022166785	[0.018-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
665	chr6	10534810	10534811	rs6911448	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	6p24.3	NR	rs6911448-C	0.510545	1E-11		0.012859	[0.0092-0.0166] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
665	chr6	10537725	10537726	rs13195149	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p24.3	GCNT2	rs13195149-G	0.453274	5E-12		0.015289398	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
665	chr6	10545727	10545728	rs16870458	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p24.3	GCNT2	rs16870458-A	0.220606	2E-10		0.016796967	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
665	chr6	10554609	10554610	rs669331	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	6p24.3		rs669331-T	NR	4E-8		0.0112	[0.0073-0.0151] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
665	chr6	10559950	10559951	rs538918175	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p24.3	NR	rs538918175-A	0.0122	2E-8	(APRT)	0.2227	NR unit decrease	Illumina [1671387] (imputed)	N
665	chr6	10596222	10596223	rs78781079	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	6p24.3		rs78781079-?	NR	5E-17				NR [~ 8900000] (imputed)	N
665	chr6	10607010	10607011	rs191578361	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Lean body mass	3,399 whole genome sequenced individuals, 11,801 European ancestry individuals	10,676 European ancestry individuals	6p24.2	GCNT2	rs191578361-A	0.0076	8E-7		0.3967	[0.24-0.55] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
665	chr6	10613456	10613457	rs7764197	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Perceived intensity of glucose	1,757 European ancestry twins	NA	6p24.2	GCNT2	rs7764197-T	0.08	8E-6		0.3	[0.16-0.44] unit increase	Illumina [4381914] (imputed)	N
666	chr6	10722032	10722033	rs62397703	34330890	Ip HF	2021-07-30	Transl Psychiatry	Genetic association study of childhood aggression across raters, instruments, and age.	Childhood aggressive behavior	87,485 European ancestry individuals	NA	6p24.2		rs62397703-T	0.057405131	5E-6		0.034368146	[0.02-0.049] unit increase	Affymetrix, Illumina [up to 7284995] (imputed)	N
666	chr6	10723448	10723449	rs1045911	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	6p24.2		rs1045911-?	NR	9E-10				NR [~ 8900000] (imputed)	N
666	chr6	10725275	10725276	rs139257849	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p24.2	TMEM14C	rs139257849-G	1.0	3E-7	(men)	16.3485	[10.08-22.61] unit decrease	Illumina [13520550] (imputed)	N
667	chr6	10810527	10810528	rs114699955	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	6p24.2	NR	rs114699955-?	NR	2E-6		6272.5757	NR unit decrease	Illumina [2379855]	N
667	chr6	10818928	10818929	rs114927772	29317602	Hall LS	2018-01-10	Transl Psychiatry	Genome-wide meta-analyses of stratified depression in Generation Scotland and UK Biobank.	Recurrent major depressive disorder	7,345 European ancestry female cases, 32,211 European ancestry female controls	NA	6p24.2	MAK	rs114927772-A	NR	3E-6		0.35	[0.21-0.49] unit increase	Affymetrix, Illumina [7105178] (imputed)	N
667	chr6	10841756	10841757	rs74760478	34162658	Quinn MC	2021-06-23	Cancer Epidemiol Biomarkers Prev	Identification of a locus near ULK1 associated with progression-free survival in ovarian cancer.	Progression free survival in epithelial ovarian cancer	5,596 European ancestry individuals	NA	6p24.2	NR	rs74760478-A		5E-6		0.2165	[0.12-0.31] unit increase	Illumina [12770451] (imputed)	N
667	chr6	10877396	10877397	rs61741855	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	6p24.2		rs61741855-T	NR	2E-12		0.2694	[0.19-0.34] unit increase	Affymetrix, Illumina [20528270] (imputed)	N
667	chr6	10877396	10877397	rs61741855	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	6p24.2	NR	rs61741855-T	NR	4E-13		0.2854	[0.21-0.36] unit increase	Affymetrix [9000000] (imputed)	N
668	chr6	10886584	10886585	rs12211124	29773799	Horikoshi M	2018-05-17	Nat Commun	Elucidating the genetic architecture of reproductive ageing in the Japanese population.	Menopause (age at onset)	43,861 Japanese ancestry women	32,545 European ancestry women	6p24.2	SYCP2L / MAK	rs12211124-T	0.69	2E-12	(japanese)	0.2	[0.14-0.26] year increase	Illumina [at least 532488] (imputed)	N
668	chr6	10886948	10886949	rs9379896	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	6p24.2	SYCP2L	rs9379896-C	NR	5E-6				Illumina [up to 11995908] (imputed)	N
668	chr6	10887252	10887253	rs9358956	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Age at menopause	approximately 143,000 European ancestry individuals	NA	6p24.2		rs9358956-?	NR	3E-25				NR [~ 8900000] (imputed)	N
668	chr6	10895259	10895260	rs6899676	29773799	Horikoshi M	2018-05-17	Nat Commun	Elucidating the genetic architecture of reproductive ageing in the Japanese population.	Menarche (age at onset)	67,029 Japanese ancestry women	73,397 European ancestry women	6p24.2	NR	rs6899676-A	0.6297	3E-7	(japanese)	0.141	[0.088-0.194] year decrease	Illumina [at least 532488] (imputed)	N
668	chr6	10895259	10895260	rs6899676	26414677	Day FR	2015-11-01	Nat Genet	Large-scale genomic analyses link reproductive aging to hypothalamic signaling, breast cancer susceptibility and BRCA1-mediated DNA repair.	Menopause (age at onset)	up to 69,626 European ancestry women	NA	6p24.2	SYCP2L, MAK	rs6899676-A	0.8	2E-19		0.23	[0.17-0.29] years decrease	Affymetrix, Illumina [~ 2600000] (imputed)	N
668	chr6	10897487	10897488	rs2153157	22267201	Stolk L	2012-01-22	Nat Genet	Meta-analyses identify 13 loci associated with age at menopause and highlight DNA repair and immune pathways.	Menopause (age at onset)	38,968 European ancestry female individuals	Up to 14,435 European ancestry female individuals	6p24.2	SYCP2L	rs2153157-A	0.492	8E-12		0.165	[0.12-0.21] years increase	Affymetrix, Illumina [2551160] (imputed)	N
668	chr6	10897487	10897488	rs2153157	19448621	He C	2009-05-17	Nat Genet	Genome-wide association studies identify loci associated with age at menarche and age at natural menopause.	Menarche and menopause (age at onset)	17,438 European ancestry female individuals	NA	6p24.2	GCM2, SYCP2L	rs2153157-T	0.49	5E-8	(age at natural menopause)	0.29	[0.19-0.39] years increase	Illumina [317759]	N
668	chr6	10906255	10906256	rs4713039	25085501	Bunyavanich S	2014-08-02	BMC Med Genomics	Integrated genome-wide association, coexpression network, and expression single nucleotide polymorphism analysis identifies novel pathway in allergic rhinitis.	Allergic rhinitis	872 European ancestry cases, 1,193 Latino cases, 647 African American/Afro-Caribbean cases, 1,162 European ancestry controls, 1,133 Latino controls, 626 African American/Afro-Caribbean controls	NA	6p24.2	SYCP2L	rs4713039-?	NR	6E-7	(Latino)	1.57	[1.39-1.75]	Affymetrix, Illumina [NR] (imputed)	N
668	chr6	10908868	10908869	rs9366669	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6p24.2	GCM2	rs9366669-?	NR	4E-6	(CE 20:5)	0.18821536	[0.11-0.27] unit increase	Affymetrix [at least 2500000] (imputed)	N
668	chr6	10918512	10918513	rs2788869	28424481	Sugiura-Ogasawara M	2017-04-20	J Hum Genet	The first genome-wide association study identifying new susceptibility loci for obstetric antiphospholipid syndrome.	Obstetric antiphospholipid syndrome	115 Japanese ancestry female cases, 419 Japanese ancestry male and female controls	NA	6p24.2	SYCP2L	rs2788869-A	0.05	1E-6		3.22	[1.97-5.26]	Affymetrix [426344]	N
668	chr6	10921530	10921531	rs190994806	24159190	Seppala I	2013-10-24	Eur Heart J	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Symmetrical dimethylarginine levels	5110 European ancestry individuals	NA	6p24.2	NR	rs190994806-A	0.003	3E-6		1.26	[0.73-1.79] unit increase	Affymetrix, Illumina [10085758] (imputed)	N
668	chr6	10921530	10921531	rs190994806	24159190	Seppala I	2013-10-24	Eur Heart J	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Serum dimethylarginine levels (asymmetric/symetric ratio)	5110 European ancestry individuals	NA	6p24.2	NR	rs190994806-A	0.003	9E-6		1.199	[0.67-1.73] unit decrease	Affymetrix, Illumina [10085758] (imputed)	N
668	chr6	10923851	10923852	rs1767776	34532976	Wan J	2021-09-17	J Thromb Haemost	Kallikrein augments the anticoagulant function of the protein C system in thrombin generation.	Thrombin generation parameter (endogenous thrombin potential)	327 European ancestry individuals	NA	6p24.2		rs1767776-C	0.187	6E-7		0.458	% increase	Illumina [7000000] (imputed)	N
668	chr6	10924072	10924073	rs567419663	34620984	Skuladottir AT	2021-10-07	Commun Biol	A genome-wide meta-analysis uncovers six sequence variants conferring risk of vertigo.	Vertigo	48,072 European ancestry cases, 894,541 European ancestry controls	NA	6p24.2		rs567419663-T	NR	9E-6		1.85856		Affymetrix, Illumina [62056310] (imputed)	N
668	chr6	10924242	10924243	rs1225763	28424481	Sugiura-Ogasawara M	2017-04-20	J Hum Genet	The first genome-wide association study identifying new susceptibility loci for obstetric antiphospholipid syndrome.	Obstetric antiphospholipid syndrome	115 Japanese ancestry female cases, 419 Japanese ancestry male and female controls	NA	6p24.2	SYCP2L	rs1225763-A	0.053	2E-6		3.34	[2.00-5.60]	Affymetrix [426344]	N
668	chr6	10924991	10924992	rs1225764	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	6p24.2	NR	rs1225764-?	NR	3E-7				Affymetrix [NR]	N
668	chr6	10951736	10951737	rs9393800	29773799	Horikoshi M	2018-05-17	Nat Commun	Elucidating the genetic architecture of reproductive ageing in the Japanese population.	Menarche (age at onset)	67,029 Japanese ancestry women	73,397 European ancestry women	6p24.2	NR	rs9393800-A	0.7523	1E-8	(japanese)	0.172	[0.11-0.23] year increase	Illumina [at least 532488] (imputed)	N
668	chr6	10951736	10951737	rs9393800	26414677	Day FR	2015-11-01	Nat Genet	Large-scale genomic analyses link reproductive aging to hypothalamic signaling, breast cancer susceptibility and BRCA1-mediated DNA repair.	Menopause (age at onset)	up to 69,626 European ancestry women	NA	6p24.2	SYCP2L, MAK	rs9393800-G	0.27	4E-13		0.17	[0.13-0.21] years decrease	Affymetrix, Illumina [~ 2600000] (imputed)	N
668	chr6	10960157	10960158	rs6918936	21829377	Lemaitre RN	2011-07-28	PLoS Genet	Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Plasma omega-3 polyunsaturated fatty acid level (eicosapentaenoic acid)	8,866 European ancestry individuals	NA	6p24.2	SYCP2L	rs6918936-C	NR	3E-8		0.03	[NR] % increase	Affymetrix, Illumina [NR]	N
668	chr6	10961453	10961454	rs2295599	26503814	Hardin M	2016-10-27	Pharmacogenomics J	A genome-wide analysis of the response to inhaled ?2-agonists in chronic obstructive pulmonary disease.	Response to bronchodilator in chronic obstructive pulmonary disease (change in FEV1)	5,766 European ancestry cases, 811 African American cases	NA	6p24.2	SYCP2L	rs2295599-A	0.1	5E-7	(BDRABS, AA)	0.07	[0.043-0.097] unit increase	Illumina [NR] (imputed)	N
668	chr6	10961453	10961454	rs2295599	26503814	Hardin M	2016-10-27	Pharmacogenomics J	A genome-wide analysis of the response to inhaled ?2-agonists in chronic obstructive pulmonary disease.	Response to bronchodilator in chronic obstructive pulmonary disease (change in FEV1)	5,766 European ancestry cases, 811 African American cases	NA	6p24.2	SYCP2L	rs2295599-A	0.1	1E-7	(BDRBASE, AA)	6.0	[3.79-8.21] unit increase	Illumina [NR] (imputed)	N
668	chr6	10963846	10963847	rs1150561	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in lean individuals	up to 5,529 European ancestry male individuals, up to 9,753 European ancestry female individuals	NA	6p24.2	SYCP2L	rs1150561-G	0.94	8E-6	(women)	0.175	[0.099-0.251] kg/m2 decrease	Affymetrix, Illumina [at least 188473] (imputed)	N
668	chr6	10969140	10969141	rs4713103	21829377	Lemaitre RN	2011-07-28	PLoS Genet	Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Plasma omega-3 polyunsaturated fatty acid levels (docosapentaenoic acid)	8,866 European ancestry individuals	NA	6p24.2	SYCP2L	rs4713103-T	NR	3E-36		0.04	[NR] % increase	Affymetrix, Illumina [NR]	N
668	chr6	10969140	10969141	rs4713103	21829377	Lemaitre RN	2011-07-28	PLoS Genet	Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Plasma omega-3 polyunsaturated fatty acid levels (docosahexaenoic acid)	8,866 European ancestry individuals	NA	6p24.2	SYCP2L	rs4713103-T	NR	8E-14		0.11	[NR] % decrease	Affymetrix, Illumina [NR]	N
668	chr6	10971885	10971886	rs72653721	26503814	Hardin M	2016-10-27	Pharmacogenomics J	A genome-wide analysis of the response to inhaled ?2-agonists in chronic obstructive pulmonary disease.	Response to bronchodilator in chronic obstructive pulmonary disease (change in FEV1)	5,766 European ancestry cases, 811 African American cases	NA	6p24.2	SYCP2L	rs72653721-C	0.88	3E-7	(BDRPRED, AA)	2.746	[1.71-3.78] unit decrease	Illumina [NR] (imputed)	N
668	chr6	10980638	10980639	rs12529809	26503814	Hardin M	2016-10-27	Pharmacogenomics J	A genome-wide analysis of the response to inhaled ?2-agonists in chronic obstructive pulmonary disease.	Response to bronchodilator in chronic obstructive pulmonary disease (change in FEV1)	5,766 European ancestry cases, 811 African American cases	NA	6p24.2	ELOVL2	rs12529809-G	0.88	8E-7	(BDRBASE, AA)	5.674	[3.44-7.91] unit decrease	Illumina [NR] (imputed)	N
668	chr6	10980638	10980639	rs12529809	26503814	Hardin M	2016-10-27	Pharmacogenomics J	A genome-wide analysis of the response to inhaled ?2-agonists in chronic obstructive pulmonary disease.	Response to bronchodilator in chronic obstructive pulmonary disease (change in FEV1)	5,766 European ancestry cases, 811 African American cases	NA	6p24.2	ELOVL2	rs12529809-G	0.88	8E-7	(BDRABS, AA)	0.07	[0.05-0.09] unit decrease	Illumina [NR] (imputed)	N
668	chr6	10980638	10980639	rs12529809	26503814	Hardin M	2016-10-27	Pharmacogenomics J	A genome-wide analysis of the response to inhaled ?2-agonists in chronic obstructive pulmonary disease.	Response to bronchodilator in chronic obstructive pulmonary disease (change in FEV1)	5,766 European ancestry cases, 811 African American cases	NA	6p24.2	ELOVL2	rs12529809-G	0.88	5E-7	(BDRPRED, AA)	2.64	[1.62-3.66] unit decrease	Illumina [NR] (imputed)	N
668	chr6	10981052	10981053	rs8523	25500335	Tintle NL	2014-12-02	Prostaglandins Leukot Essent Fatty Acids	A genome-wide association study of saturated, mono- and polyunsaturated red blood cell fatty acids in the Framingham Heart Offspring Study.	Red blood cell fatty acid levels	2,633 individuals	NA	6p24.2	SYCP2L, ELOVL2	rs8523-A	0.44	4E-9	(DPA-n3)	0.115	[NR] unit increase	Affymetrix [~ 2500000] (imputed)	N
668	chr6	10982358	10982359	rs17606561	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:5_[M-H]1- levels	13,814 British ancestry individuals	NA	6p24.2		rs17606561-A	NR	3E-11		0.0792522	[0.056-0.103] unit increase	Affymetrix [87696910] (imputed)	N
668	chr6	10982358	10982359	rs17606561	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:6_[M+H]1+/Phosphatidylethanolamine_43:6_[M+H]1+ levels	13,814 British ancestry individuals	NA	6p24.2		rs17606561-A	NR	1E-10		0.114554	[0.08-0.149] unit decrease	Affymetrix [87696910] (imputed)	N
668	chr6	10982358	10982359	rs17606561	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:5_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	6p24.2		rs17606561-A	NR	2E-11		0.0658468	[0.047-0.085] unit increase	Affymetrix [87696910] (imputed)	N
668	chr6	10982358	10982359	rs17606561	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_22:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	6p24.2		rs17606561-A	NR	2E-13		0.103076	[0.076-0.13] unit decrease	Affymetrix [87696910] (imputed)	N
668	chr6	10982358	10982359	rs17606561	22359512	Demirkan A	2012-02-16	PLoS Genet	Genome-wide association study identifies novel loci associated with circulating phospho- and sphingolipid concentrations.	Phospholipid levels (plasma)	4,034 European ancestry individuals	NA	6p24.2	ELOVL2	rs17606561-?	NR	1E-11	(proportions)	0.0	[0.80-1.10] % increase	Illumina [NR] (imputed)	N
668	chr6	10982651	10982652	rs1225737	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(40:6)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	6p24.2		rs1225737-A	NR	4E-27		0.1247	[0.1-0.15] unit decrease	Illumina [6720657] (imputed)	N
668	chr6	10982972	10982973	rs3734398	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:5_[M+H]1+/Phosphatidylethanolamine_41:5_[M+H]1+/Phosphatidate_43:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	6p24.2		rs3734398-C	NR	2E-10		0.0962521	[0.067-0.126] unit increase	Affymetrix [87696910] (imputed)	N
668	chr6	10982972	10982973	rs3734398	21829377	Lemaitre RN	2011-07-28	PLoS Genet	Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Plasma omega-3 polyunsaturated fatty acid levels (docosapentaenoic acid)	8,866 European ancestry individuals	NA	6p24.2	ELOVL2	rs3734398-T	NR	1E-43		0.04	[NR] % decrease	Affymetrix, Illumina [NR]	N
668	chr6	10983970	10983971	rs4532436	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(40:6)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	6p24.2		rs4532436-G	NR	1E-11		0.0502	[0.036-0.065] unit decrease	Illumina [6720657] (imputed)	N
668	chr6	10984329	10984330	rs9379992	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(40:6)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	6p24.2		rs9379992-A	NR	7E-10		0.0711	[0.049-0.094] unit decrease	Illumina [6720657] (imputed)	N
668	chr6	10991934	10991935	rs3798707	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(40:6)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	6p24.2		rs3798707-G	NR	5E-12		0.0605	[0.043-0.078] unit increase	Illumina [6720657] (imputed)	N
668	chr6	10995014	10995015	rs2236212	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:5_[M+H]1+/Phosphatidylethanolamine_41:5_[M+H]1+/Phosphatidate_43:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	6p24.2		rs2236212-C	NR	3E-10		0.0954364	[0.066-0.125] unit increase	Affymetrix [87696910] (imputed)	N
668	chr6	10995014	10995015	rs2236212	24823311	Guan W	2014-05-13	Circ Cardiovasc Genet	Genome-wide association study of plasma N6 polyunsaturated fatty acids within the cohorts for heart and aging research in genomic epidemiology consortium.	Plasma omega-6 polyunsaturated fatty acid levels (adrenic acid)	8,631 European ancestry individuals	NA	6p24.2	ELOVL2	rs2236212-C	0.431	7E-7		0.01	[NR] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
668	chr6	10995014	10995015	rs2236212	21829377	Lemaitre RN	2011-07-28	PLoS Genet	Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Plasma omega-3 polyunsaturated fatty acid levels (docosahexaenoic acid)	8,866 European ancestry individuals	NA	6p24.2	ELOVL2	rs2236212-C	NR	1E-15		0.11	[NR] % decrease	Affymetrix, Illumina [NR]	N
668	chr6	10997822	10997823	rs61624919	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(40:6)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	6p24.2		rs61624919-C	NR	7E-11		0.0753	[0.053-0.098] unit increase	Illumina [6720657] (imputed)	N
668	chr6	11002809	11002810	rs3798711	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(40:6)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	6p24.2		rs3798711-A	NR	5E-12		0.0733	[0.053-0.094] unit decrease	Illumina [6720657] (imputed)	N
668	chr6	11005841	11005842	rs2295602	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(40:6)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	6p24.2		rs2295602-A	NR	4E-13		0.0446	[0.033-0.057] unit decrease	Illumina [6720657] (imputed)	N
668	chr6	11005841	11005842	rs2295602	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:5_[M+H]1+/Phosphatidylethanolamine_41:5_[M+H]1+/Phosphatidate_43:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	6p24.2		rs2295602-C	NR	3E-10		0.0945585	[0.065-0.124] unit increase	Affymetrix [87696910] (imputed)	N
668	chr6	11005841	11005842	rs2295602	26068415	Draisma HHM	2015-06-12	Nat Commun	Genome-wide association study identifies novel genetic variants contributing to variation in blood metabolite levels.	Glycerophospholipid levels	up to 7,478 European ancestry individuals	1,182 European ancestry individuals	6p24.2	ELOVL2	rs2295602-T	0.5715	7E-19	(Phosphatidylcholine diacyl C42:5)	0.0432	[0.034-0.053] unit increase	Affymetrix, Illumina [at least 296619] (imputed)	N
668	chr6	11005841	11005842	rs2295602	26068415	Draisma HHM	2015-06-12	Nat Commun	Genome-wide association study identifies novel genetic variants contributing to variation in blood metabolite levels.	Glycerophospholipid levels	up to 7,478 European ancestry individuals	1,182 European ancestry individuals	6p24.2	ELOVL2	rs2295602-T	0.5715	2E-13	(Phosphatidylcholine diacyl C42:6)	0.0288	[0.021-0.036] unit increase	Affymetrix, Illumina [at least 296619] (imputed)	N
668	chr6	11008621	11008622	rs3798713	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(40:6)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	6p24.2		rs3798713-G	NR	5E-12		0.0792	[0.057-0.102] unit increase	Illumina [6720657] (imputed)	N
668	chr6	11008621	11008622	rs3798713	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:5_[M+H]1+/Phosphatidylethanolamine_41:5_[M+H]1+/Phosphatidate_43:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	6p24.2		rs3798713-C	NR	2E-10		0.0962358	[0.067-0.126] unit increase	Affymetrix [87696910] (imputed)	N
668	chr6	11008621	11008622	rs3798713	21829377	Lemaitre RN	2011-07-28	PLoS Genet	Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Plasma omega-3 polyunsaturated fatty acid level (eicosapentaenoic acid)	8,866 European ancestry individuals	NA	6p24.2	ELOVL2	rs3798713-C	NR	2E-12		0.04	[NR] % increase	Affymetrix, Illumina [NR]	N
669	chr6	11010799	11010800	rs9295752	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(40:6)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	6p24.2		rs9295752-T	NR	6E-10		0.0577	[0.039-0.076] unit decrease	Illumina [6720657] (imputed)	N
669	chr6	11011073	11011074	rs9380025	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(40:6)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	6p24.2		rs9380025-G	NR	7E-10		0.0595	[0.041-0.078] unit increase	Illumina [6720657] (imputed)	N
669	chr6	11012858	11012859	rs953413	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(40:6)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	6p24.2		rs953413-T	NR	7E-10		0.0647	[0.044-0.085] unit decrease	Illumina [6720657] (imputed)	N
669	chr6	11014219	11014220	rs7743830	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(40:6)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	6p24.2		rs7743830-T	NR	4E-10		0.0267	[0.018-0.035] unit increase	Illumina [6720657] (imputed)	N
669	chr6	11014555	11014556	rs57997684	30420678	Tasa T	2018-11-12	Eur J Hum Genet	Genetic variation in the Estonian population: pharmacogenomics study of adverse drug effects using electronic health records.	Adverse response to drug	16,226 European ancestry individuals	NA	6p24.2	ELOVL2	rs57997684-C	0.019	5E-7	(Benzodiazepine related drugs [N05CF])	3.12		Illumina [16500000] (imputed)	N
669	chr6	11017824	11017825	rs1570069	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(40:6)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	6p24.2		rs1570069-T	NR	1E-22		0.1162	[0.093-0.14] unit decrease	Illumina [6720657] (imputed)	N
669	chr6	11018811	11018812	rs1321536	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(40:6)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	6p24.2		rs1321536-C	NR	7E-25		0.061	[0.049-0.073] unit increase	Illumina [6720657] (imputed)	N
669	chr6	11025419	11025420	rs2180725	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of linoleic acid to total fatty acids	115,006 European ancestry individuals	NA	6p24.2		rs2180725-T	0.768461	2E-8		0.0264252	[0.017-0.036] unit increase	NR [11722792] (imputed)	N
669	chr6	11028653	11028654	rs2208338	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	6p24.2	ELOVL2	rs2208338-A	NR	2E-13	(Phosphatidylcholine with diacyl residue sum C38:5/Phosphatidylcholine with diacyl residue sum C42:5)	0.351992	[0.26-0.44] unit increase	Illumina [up to 9281895] (imputed)	N
669	chr6	11040001	11040002	rs3798720	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(40:6)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	6p24.2		rs3798720-G	NR	5E-12		0.068	[0.049-0.087] unit decrease	Illumina [6720657] (imputed)	N
669	chr6	11040422	11040423	rs3798722	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:5_[M-H]1- levels	13,814 British ancestry individuals	NA	6p24.2		rs3798722-G	NR	2E-10		0.0741272	[0.051-0.097] unit increase	Affymetrix [87696910] (imputed)	N
669	chr6	11040422	11040423	rs3798722	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:5_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	6p24.2		rs3798722-G	NR	6E-11		0.0629184	[0.044-0.082] unit increase	Affymetrix [87696910] (imputed)	N
669	chr6	11040422	11040423	rs3798722	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_22:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	6p24.2		rs3798722-G	NR	5E-12		0.094233	[0.068-0.121] unit decrease	Affymetrix [87696910] (imputed)	N
669	chr6	11040422	11040423	rs3798722	22916037	Inouye M	2012-08-16	PLoS Genet	Novel Loci for metabolic networks and multi-tissue expression studies reveal genes for atherosclerosis.	Metabolite levels	6,608 European ancestry individuals	NA	6p24.2	ELOVL2	rs3798722-?	0.12	4E-9				Illumina [~ 2000000] (imputed)	N
669	chr6	11042908	11042909	rs9393903	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:5_[M-H]1- levels	13,814 British ancestry individuals	NA	6p24.2		rs9393903-A	NR	4E-12		0.0819405	[0.059-0.105] unit increase	Affymetrix [87696910] (imputed)	N
669	chr6	11042908	11042909	rs9393903	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:6_[M+H]1+/Phosphatidylethanolamine_43:6_[M+H]1+ levels	13,814 British ancestry individuals	NA	6p24.2		rs9393903-A	NR	9E-11		0.114333	[0.08-0.149] unit decrease	Affymetrix [87696910] (imputed)	N
669	chr6	11042908	11042909	rs9393903	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:5_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	6p24.2		rs9393903-A	NR	3E-11		0.065268	[0.046-0.084] unit increase	Affymetrix [87696910] (imputed)	N
669	chr6	11042908	11042909	rs9393903	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_22:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	6p24.2		rs9393903-A	NR	2E-13		0.102259	[0.075-0.129] unit decrease	Affymetrix [87696910] (imputed)	N
669	chr6	11042908	11042909	rs9393903	21886157	Suhre K	2011-08-31	Nature	Human metabolic individuality in biomedical and pharmaceutical research.	Metabolic traits	2,820 European ancestry individuals	NA	6p24.2	ELOVL2	rs9393903-A	0.242	2E-14	(SM-16 + 7 other traits)	0.06	[NR] unit decrease	Affymetrix, Illumina [534665]	N
669	chr6	11044067	11044068	rs9468308	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:6)_[M+H]1+/Phosphatidylethanolamine(43:6)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	6p24.2		rs9468308-T	NR	7E-10		0.0349	[0.024-0.046] unit increase	Illumina [6720657] (imputed)	N
669	chr6	11047475	11047476	rs1812685	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(40:6)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	6p24.2		rs1812685-G	NR	1E-13		0.0761	[0.056-0.096] unit increase	Illumina [6720657] (imputed)	N
669	chr6	11047955	11047956	rs6920155	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(40:6)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	6p24.2		rs6920155-T	NR	2E-10		0.105	[0.072-0.138] unit decrease	Illumina [6720657] (imputed)	N
669	chr6	11052417	11052418	rs6456810	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(40:6)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	6p24.2		rs6456810-A	NR	1E-10		0.0564	[0.039-0.073] unit increase	Illumina [6720657] (imputed)	N
669	chr6	11072321	11072322	rs9393915	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:6)_[M+H]1+/Phosphatidylethanolamine(41:6)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	6p24.2		rs9393915-G	NR	7E-10		0.0788	[0.054-0.104] unit decrease	Illumina [6720657] (imputed)	N
669	chr6	11072321	11072322	rs9393915	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite ratios	Up to 5,591 European ancestry individuals	Up to 1,767 European ancestry individuals	6p24.2	ELOVL2	rs9393915-T	0.22	1E-22	(docosapentaenoate (n3 DPA; 22:5n3)/X-12627)	0.042	[0.034-0.05] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
669	chr6	11074346	11074347	rs4711171	21829377	Lemaitre RN	2011-07-28	PLoS Genet	Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Plasma omega-3 polyunsaturated fatty acid levels (docosahexaenoic acid)	8,866 European ancestry individuals	NA	6p24.2	HERV, FRD	rs4711171-T	NR	5E-13		0.012	[NR] % decrease	Affymetrix, Illumina [NR]	N
669	chr6	11074687	11074688	rs2024980	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(40:6)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	6p24.2		rs2024980-C	NR	1E-13		0.0814	[0.06-0.103] unit increase	Illumina [6720657] (imputed)	N
669	chr6	11075199	11075200	rs61390967	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(40:6)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	6p24.2		rs61390967-A	NR	7E-11		0.0617	[0.043-0.08] unit increase	Illumina [6720657] (imputed)	N
669	chr6	11076025	11076026	rs1321535	21829377	Lemaitre RN	2011-07-28	PLoS Genet	Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Plasma omega-3 polyunsaturated fatty acid levels (docosapentaenoic acid)	8,866 European ancestry individuals	NA	6p24.2	HERV, FRD	rs1321535-T	NR	1E-38		0.04	[NR] % decrease	Affymetrix, Illumina [NR]	N
669	chr6	11076025	11076026	rs1321535	21829377	Lemaitre RN	2011-07-28	PLoS Genet	Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Plasma omega-3 polyunsaturated fatty acid level (eicosapentaenoic acid)	8,866 European ancestry individuals	NA	6p24.2	HERV, FRD	rs1321535-T	NR	5E-11		0.04	[NR] % decrease	Affymetrix, Illumina [NR]	N
669	chr6	11084553	11084554	rs4713169	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	6p24.2	ELOVL2	rs4713169-C	0.42	3E-14	(X-12627)	0.032	[0.024-0.040] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
669	chr6	11088902	11088903	rs12660775	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:5_[M-H]1- levels	13,814 British ancestry individuals	NA	6p24.2		rs12660775-A	NR	1E-10		0.0770555	[0.054-0.101] unit increase	Affymetrix [87696910] (imputed)	N
669	chr6	11088902	11088903	rs12660775	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:6_[M+H]1+/Phosphatidylethanolamine_43:6_[M+H]1+ levels	13,814 British ancestry individuals	NA	6p24.2		rs12660775-A	NR	1E-10		0.115286	[0.08-0.15] unit decrease	Affymetrix [87696910] (imputed)	N
669	chr6	11088902	11088903	rs12660775	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_22:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	6p24.2		rs12660775-A	NR	1E-12		0.099368	[0.072-0.127] unit decrease	Affymetrix [87696910] (imputed)	N
669	chr6	11101917	11101918	rs6910061	26305897	Iyengar SK	2015-08-25	PLoS Genet	Genome-Wide Association and Trans-ethnic Meta-Analysis for Advanced Diabetic Kidney Disease: Family Investigation of Nephropathy and Diabetes (FIND).	Diabetic kidney disease	1,564 African American cases, 369  African American diabetic controls, 1,288 African American non-diabetic controls, 538 American Indian ancestry cases, 319 American Indian ancestry diabetic controls, 342 European ancestry cases, 404 European ancestry diabetic controls, 779 Mexican ancestry cases, 594 Mexican ancestry diabetic controls	950 African American cases, 50 African American diabetic controls, 1,887 African American non-diabetic controls, 471 American Indian ancestry cases, 340 American Indian ancestry diabetic controls, 486 American Indian ancestry non-diabetic controls, 582 European ancestry ancestry cases, 205 European ancestry diabetic controls, 2,568 European ancestry non-diabetic controls	6p24.2	SMIM13	rs6910061-A	0.11	9E-6	(Mexican, additive )	1.74	[1.36-2.22]	Affymetrix [NR]	N
670	chr6	11146890	11146891	rs34698933	25130324	Cai DC	2014-08-29	Genes Brain Behav	A genome-wide search for quantitative trait loci affecting the cortical surface area and thickness of Heschl's gyrus.	Heschl's gyrus morphology	1,778 European ancestry individuals, 1,276 individuals	NA	6p24.2	SMIM13	rs34698933-A	0.65	3E-6	(Left HG thickness)	0.0328	unit increase	Affymetrix, Illumina [4103035] (imputed)	N
670	chr6	11184866	11184867	rs1803710	33959940	Chen Y	2021-05-06	Br J Dermatol	A GWAS identifies novel gene associations with facial skin wrinkling and mole count in Latin-Americans.	Facial wrinkles (frown lines)	6,254 Latin American individuals	NA	6p24.2		rs1803710-C	NR	3E-8	(men)	0.14	NR unit increase	Illumina [8703729] (imputed)	N
670	chr6	11190214	11190215	rs35719173	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		AL139807.1	rs35719173-?	NR	2E-9		4.1077	[NR] unit decrease	Affymetrix [NR] (imputed)	N
670	chr6	11190214	11190215	rs35719173	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		AL139807.1	rs35719173-?	NR	1E-8	(male)	3.65771	[NR] unit decrease	Affymetrix [NR] (imputed)	N
670	chr6	11217896	11217897	rs2018336	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	6p24.2	NR	rs2018336-T	NR	4E-13		1.064	[1.05-1.08]	Affymetrix, Illumina [29235255] (imputed)	N
670	chr6	11219029	11219030	rs4713266	33293427	Emami NC	2020-12-08	Cancer Res	A large-scale association study detects novel rare variants, risk genes, functional elements, and polygenic architecture of prostate cancer susceptibility.	Prostate cancer	14,113 European ancestry cases, 194,140 European ancestry controls	NA	6p24.2	NR	rs4713266-C	NR	1E-5		1.06	NR	Affymetrix [at least 232408] (imputed)	N
670	chr6	11219029	11219030	rs4713266	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	6p24.2	NR	rs4713266-C	0.52	1E-10		1.05	[1.04-1.07]	Illumina [20370935] (imputed)	N
670	chr6	11219029	11219030	rs4713266	25217961	Al Olama AA	2014-09-14	Nat Genet	A meta-analysis of 87,040 individuals identifies 23 new susceptibility loci for prostate cancer.	Prostate cancer	34,379 European ancestry cases, 33,164 European ancestry controls, 5,327 African ancestry cases, 5,136 African ancestry controls, 2,563 Japanese ancestry cases, 4,391 Japanese ancestry controls, 1,034 Latino cases, 1,046 Latino controls	NA	6p24.2	NEDD9	rs4713266-C	0.52	4E-8	(EA)	1.07	[1.04-1.09]	Affymetrix, Illumina [up to 16852405] (imputed)	N
670	chr6	11219029	11219030	rs4713266	25217961	Al Olama AA	2014-09-14	Nat Genet	A meta-analysis of 87,040 individuals identifies 23 new susceptibility loci for prostate cancer.	Prostate cancer	34,379 European ancestry cases, 33,164 European ancestry controls, 5,327 African ancestry cases, 5,136 African ancestry controls, 2,563 Japanese ancestry cases, 4,391 Japanese ancestry controls, 1,034 Latino cases, 1,046 Latino controls	NA	6p24.2	NEDD9	rs4713266-C	0.52	3E-9		1.06	[1.04-1.08]	Affymetrix, Illumina [up to 16852405] (imputed)	N
670	chr6	11234034	11234035	rs9380152	28800603	Arpawong TE	2017-08-11	PLoS One	Genetic variants specific to aging-related verbal memory: Insights from GWASs in a population-based cohort.	Verbal memory performance (residualized delayed recall level)	7,486 European ancestry individuals aged 50 years or older	6,898 European ancestry individuals aged 50 years or older	6p24.2	NR	rs9380152-A	NR	3E-6			unit increase	Illumina [at least 1198956] (imputed)	N
670	chr6	11241624	11241625	rs7756089	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	6p24.2	Intergenic	rs7756089-?	NR	9E-6		1.639	[NR]	Affymetrix [492217] (imputed)	N
670	chr6	11241787	11241788	rs7738851	29931343	Haworth S	2018-06-20	Hum Mol Genet	Consortium genome-wide meta-analysis for childhood dental caries traits.	Childhood dental caries in permanent teeth	5,875 cases, 7,478 controls	NA	6p24.2	NEDD9	rs7738851-A	0.85	2E-8		1.28	[NR]	Affymetrix, Illumina [8734121] (imputed)	N
671	chr6	11286729	11286730	rs72832913	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 1 levels	252 European ancestry individuals	NA	6p24.2		rs72832913-A	NR	6E-6		10.613	[6.1-15.12] unit decrease	Illumina [NR] (imputed)	N
671	chr6	11309827	11309828	rs4711244	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hypothyroidism	1,114 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	6p24.2		rs4711244-T	0.05574345	4E-8		0.574521	[0.37-0.78] unit increase	Illumina [13429045] (imputed)	N
671	chr6	11310418	11310419	rs4437462	22174851	Lingappa JR	2011-12-12	PLoS One	Genomewide association study for determinants of HIV-1 acquisition and viral set point in HIV-1 serodiscordant couples with quantified virus exposure.	HIV-1 susceptibility	496 African ancestry cases and 302 African ancestry exposed controls from serodiscordant couples	NA	6p24.2	NEDD9	rs4437462-?	NR	2E-6				Illumina [990115]	N
671	chr6	11322789	11322790	rs80271657	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Small cell lung carcinoma	2,664 European ancestry cases,  21,444 European ancestry controls	NA	6p24.2	NEDD9	rs80271657-A	0.012126484	4E-6		1.9961306	[1.48586427-2.681629472]	Illumina [10439017] (imputed)	N
671	chr6	11327020	11327021	rs742115	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	6p24.2	NEDD9	rs742115-T	0.5118	4E-7		0.0331	[0.02-0.046] unit decrease	NR [8041861] (imputed)	N
671	chr6	11394286	11394287	rs17507554	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	6p24.2	NEDD9, TMEM170B	rs17507554-?	NR	3E-25		1.589	[1.28-1.9] unit decrease	Affymetrix [11100000] (imputed)	N
672	chr6	11415647	11415648	rs560442186	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-hip ratio	1,254 whole genome sequenced European ancestry individuals, 3,071 whole genome sequenced individuals, 29,723 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,053 Mylopotamos (founder/genetic isolate) individuals, 879 Pomak (founder/genetic isolate) individuals	206,053 European ancestry individuals	6p24.2	RP11-716O23.1	rs560442186-T	0.0025	9E-6		0.4759	[0.27-0.69] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
672	chr6	11415647	11415648	rs560442186	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	6p24.2	RP11-716O23.1	rs560442186-T	0.0024	2E-6		0.4439	[0.26-0.62] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
672	chr6	11415647	11415648	rs560442186	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	6p24.2	RP11-716O23.1	rs560442186-T	0.0024	2E-6		0.4439	[0.26-0.62] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
672	chr6	11438954	11438955	rs115863790	28084903	Hallberg P	2017-01-13	Pharmacogenomics	Genetic variants associated with angiotensin-converting enzyme inhibitor-induced cough: a genome-wide association study in a Swedish population.	Cough in response to angiotensin-converting enzyme inhibitor drugs	123 European ancestry cases, 1,345 European and unknown ancestry controls, 1 Middle Eastern ancestry case	NR	6p24.2	Intergenic	rs115863790-?	NR	5E-7		8.75	[3.77-20.33]	Illumina [8600000] (imputed)	N
672	chr6	11472844	11472845	rs9394102	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	6p24.2		rs9394102-?	NR	3E-8				NR [~ 8900000] (imputed)	N
672	chr6	11484783	11484783	rs200243764	34340725	Campos AI	2021-08-03	Twin Res Hum Genet	Genetic Susceptibility to Pneumonia: A GWAS Meta-Analysis Between the UK Biobank and FinnGen.	Pneumonia	24,760 European ancestry cases, 525,615 European ancestry controls	NA	6p24.2		rs200243764-G	NR	3E-6		0.022	[0.012-0.032] unit increase	NR [7831927]	N
672	chr6	11485132	11485133	rs4713577	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p24.2	NR	rs4713577-?	NR	9E-8		5.337	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
672	chr6	11493833	11493834	rs9380321	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Cognitive traits (MTAG)	331,679 British ancestry individuals	NA	6p24.2		rs9380321-?	NR	3E-8				NR [7857346] (imputed)	N
672	chr6	11496047	11496048	rs9348895	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	6p24.2	NEDD9, LOC105374928	rs9348895-?	NR	2E-8	(African)			Affymetrix, Illumina [18800000] (imputed)	N
672	chr6	11496047	11496048	rs9348895	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (1df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	6p24.2	NEDD9, LOC105374928	rs9348895-A	0.5865	6E-6	(African)	1.214	unit increase	Affymetrix, Illumina [18800000] (imputed)	N
672	chr6	11508670	11508671	rs620729	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	6p24.2	NR	rs620729-A	0.329026	4E-10		0.04181135	[0.029-0.055] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
672	chr6	11508670	11508671	rs620729	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	6p24.2	Intergenic	rs620729-A	0.6726	3E-10		0.0191	[0.013-0.025] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
672	chr6	11508670	11508671	rs620729	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	6p24.2	ENSG00000242753	rs620729-A	NR	1E-9		0.018917589	[0.013-0.025] unit decrease	Affymetrix [NR]	N
673	chr6	11543341	11543342	rs566237	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	6p24.2	TMEM170B	rs566237-G	0.313722	4E-15		0.019013315	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
673	chr6	11543341	11543342	rs566237	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p24.2	NR	rs566237-A	0.68394	5E-17				Affymetrix, Illumina [17210439] (imputed)	N
673	chr6	11543341	11543342	rs566237	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	6p24.2	NR	rs566237-A	0.685486	4E-19		0.018504	[0.014-0.023] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
673	chr6	11543341	11543342	rs566237	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	6p24.2	Intergenic	rs566237-A	0.6832	4E-11	(MTAG)	0.0162	[0.011-0.021] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
673	chr6	11543341	11543342	rs566237	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	6p24.2	NR	rs566237-A	NR	2E-10		6.376	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
673	chr6	11574373	11574374	rs9394154	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	6p24.2	TMEM170B	rs9394154-G	0.5640000000000001	8E-10		1.0219371		Affymetrix [11880941] (imputed)	N
673	chr6	11586434	11586435	rs598907	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p24.2	NR	rs598907-?	NR	9E-7		4.911	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
673	chr6	11591794	11591795	rs604290	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	6p24.2	NR	rs604290-A	NR	2E-8		5.641	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
673	chr6	11593984	11593985	rs211510	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	6p24.2		rs211510-G	NR	2E-9		0.0115	[0.0078-0.0152] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
673	chr6	11593984	11593985	rs211510	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	6p24.2		rs211510-G	0.464995	8E-10		0.013806623	[0.0094-0.0182] unit decrease	Affymetrix [93095623] (imputed)	N
673	chr6	11593984	11593985	rs211510	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p24.2	NR	rs211510-G	0.460864	3E-12				Affymetrix, Illumina [24588908] (imputed)	N
673	chr6	11593984	11593985	rs211510	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	6p24.2	NR	rs211510-G	0.464231	1E-12		0.013075	[0.0095-0.0167] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
673	chr6	11597658	11597659	rs12195523	34154395	Brikell I	2021-06-22	Am J Psychiatry	Genetic, Clinical, and Sociodemographic Factors Associated With Stimulant Treatment Outcomes in ADHD.	Switch to non-stimulant treatment in ADHD	1,137 European ancestry cases, 3,854 European ancestry controls	NA	6p24.2		rs12195523-G	0.217	1E-5		0.041	[0.023-0.059] unit increase	Illumina [6361597] (imputed)	N
673	chr6	11615304	11615305	rs113092656	26908601	Hinds DA	2016-02-09	Hum Mol Genet	Genome-wide association analysis of self-reported events in 6135 individuals and 252 827 controls identifies 8 loci associated with thrombosis.	Thrombosis	6,135 European ancestry cases, 252,827 European ancestry controls	NA	6p24.1	TMEM170B, ADTRP	rs113092656-A	0.0341	4E-7		1.3736264	[1.22-1.55]	Illumina [at least 560000] (imputed)	N
673	chr6	11618166	11618167	rs479526	23738518	Luciano M	2013-06-05	Genes Brain Behav	A genome-wide association study for reading and language abilities in two population cohorts.	Reading and spelling	6,649 European ancestry children and adolescents	NA	6p24.1	intergenic	rs479526-T	0.55	3E-6		0.093	[0.054-0.132] unit increase	Illumina [~ 2400000] (imputed)	N
673	chr6	11628333	11628334	rs6902682	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p24.1	NR	rs6902682-G	0.183	2E-6	(IFNalpha_ABC_of_CD56brightCD16n)			Illumina [5084123] (imputed)	N
673	chr6	11637482	11637483	rs548304	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous melanoma or hair colour	36,760 European ancestry cutaneous melanoma cases, 375,188 European ancestry controls, 352,662 European ancestry individuals	NA	6p24.1	RP11-679B17.2	rs548304-G	0.802741	1E-10				Affymetrix, Illumina [NR] (imputed)	N
673	chr6	11637482	11637483	rs548304	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	6p24.1		rs548304-?	NR	4E-9				NR [~ 8900000] (imputed)	N
673	chr6	11643887	11643888	rs72819604	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid respiratory support vs population)	495 European ancestry cases, 680,440 European ancestry controls, 102 Hispanic or Latin American cases, 94,330 Hispanic or Latin American controls, 39 Black or African American cases, 22,410 Black or African American controls	NA	6p24.1		rs72819604-?	NR	5E-6		0.8061826	[0.46-1.15] unit increase	Illumina [9842460] (imputed)	N
673	chr6	11655969	11655970	rs7759725	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Daytime sleep phenotypes	874 European ancestry individuals	NA	6p24.1	ADTRP, TMEM170B, PRKRIRP5	rs7759725-T	NR	1E-6	(daytime resting)	0.8518	[0.51-1.2] unit increase	Affymetrix [7141204] (imputed)	N
674	chr6	11705699	11705700	rs742223	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal cancer	978 Austrian ancestry colorectal cancer cases, 636 Austrian ancestry advanced colorectal adenoma cases, 4,294 European ancestry controls	NA	6p24.1	TMEM170B	rs742223-?		5E-7		1.6647245	[NR]	Affymetrix [492217] (imputed)	N
674	chr6	11711814	11711815	rs210918	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on educational attainment (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	6p24.1		rs210918-?	NR	2E-8				NR [NR]	N
674	chr6	11711814	11711815	rs210918	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on Townsend deprivation index (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	6p24.1		rs210918-?	NR	4E-8				NR [NR]	N
674	chr6	11711814	11711815	rs210918	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Neuroticism	170,911 European ancestry individuals	NA	6p24.1	NR	rs210918-A	0.784	5E-6		0.018969879	[0.011-0.027] unit decrease	Affymetrix [up to 6544775] (imputed)	N
674	chr6	11712342	11712343	rs210915	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	6p24.1	NR	rs210915-T	0.805032828379718	2E-10		0.009374047	[0.0065-0.0123] unit decrease	NR [NR]	N
674	chr6	11712342	11712343	rs210915	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	6p24.1	NR	rs210915-T	0.805032828379718	1E-10		0.012211247	[0.0085-0.0159] unit decrease	NR [NR]	N
674	chr6	11712342	11712343	rs210915	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	6p24.1	NR	rs210915-T	0.805032828379718	6E-10		0.009881952	[0.0067-0.013] unit decrease	NR [NR]	N
674	chr6	11712342	11712343	rs210915	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	6p24.1	NR	rs210915-T	0.805032828379718	6E-10		0.007673362	[0.0052-0.0101] unit decrease	NR [NR]	N
674	chr6	11715149	11715150	rs210914	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	6p24.1	NR	rs210914-C	0.806752310593274	4E-11		0.0076946197	[0.0054-0.01] unit decrease	NR [NR]	N
674	chr6	11719477	11719478	rs115504329	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	6p24.1	ADTRP	rs115504329-?		3E-8				Affymetrix, Illumina [NR] (imputed)	N
674	chr6	11721220	11721221	rs9469930	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	6p24.1		rs9469930-?	NR	2E-8				NR [~ 8900000] (imputed)	N
674	chr6	11728057	11728058	rs210899	30289880	Qi G	2018-10-05	PLoS Genet	Heritability informed power optimization (HIPO) leads to enhanced detection of genetic associations across multiple traits.	Social science traits (pleiotropy) (HIPO component 1)	up to 630,791 European ancestry individuals	NA	6p24.1	ADTRP	rs210899-?	NR	4E-8				NR [2100000]	N
674	chr6	11730081	11730082	rs2294426	21618603	Beaty TH	2011-05-26	Genet Epidemiol	Evidence for gene-environment interaction in a genome wide study of nonsyndromic cleft palate.	Orofacial clefts (maternal alcohol consumption interaction)	272 European ancestry trios, 259 Asian ancestry trios, 19 African ancestry or other ancestry trios	NA	6p24.1	C6orf105	rs2294426-?	NR	4E-8	(Maternal alcohol consumption, 1df)			Illumina [~ 498000]	N
674	chr6	11731998	11731999	rs210894	30804558	Grove J	2019-02-25	Nat Genet	Identification of common genetic risk variants for autism spectrum disorder.	Autism spectrum disorder	18,381 European ancestry cases, 27,969 European ancestry controls	2,119 European ancestry cases, 142,379 European ancestry controls	6p24.1	Intergenic	rs210894-T	0.548	4E-7		1.068	[NR]	Illumina [9112387] (imputed)	N
674	chr6	11734263	11734264	rs172404	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Subjective well-being (MTAG)	388,538 European ancestry individuals	NA	6p24.1	NR	rs172404-A	0.6073	2E-9		0.0113	[0.0076-0.015] unit increase	Illumina [NR] (imputed)	N
674	chr6	11751129	11751130	rs10947543	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Subjective well-being	388,538 European ancestry individuals	NA	6p24.1	NR	rs10947543-G	0.5876	3E-8		0.0128	[0.0083-0.0173] unit decrease	Illumina [NR] (imputed)	N
674	chr6	11755057	11755058	rs116168042	31220337	Carr DF	2019-06-20	Clin Pharmacol Ther	Genome-wide association study of statin-induced myopathy in patients recruited using the UK clinical practice research datalink.	Simvastatin-induced myopathy	85 European ancestry cases, 2,501 controls	NA	6p24.1	ADTRP	rs116168042-?	NR	9E-6		2.76	[1.71-4.46]	Illumina [654642] (imputed)	N
674	chr6	11770704	11770705	rs760788	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	6p24.1		rs760788-T	NR	1E-8		0.0114	[0.0075-0.0153] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
674	chr6	11770704	11770705	rs760788	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	6p24.1		rs760788-T	NR	8E-11		0.0139	[0.0098-0.018] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
674	chr6	11770704	11770705	rs760788	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p24.1	NR	rs760788-T	0.529695	2E-10				Affymetrix, Illumina [23472807] (imputed)	N
674	chr6	11770704	11770705	rs760788	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	6p24.1	NR	rs760788-T	0.561099	4E-12		0.013442	[0.0096-0.0172] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
674	chr6	11770704	11770705	rs760788	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	6p24.1		rs760788-?	NR	1E-9				NR [~ 8900000] (imputed)	N
674	chr6	11777070	11777071	rs141041718	33106475	Li QS	2020-10-26	Transl Psychiatry	Genome-wide association studies of antidepressant class response and treatment-resistant depression.	Response to antidepressants (non-treatment-resistant vs treatment-resistant depression)	21,649 European ancestry individuals with non-treatment-resistant depression, 3,857 European ancestry individuals with treatment-resistant depression	NA	6p24.1	NR	rs141041718-T	NR	2E-6		0.5604	NR	Illumina [at least 560000] (imputed)	N
674	chr6	11785359	11785360	rs185569610	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	6p24.1	Intergenic	rs185569610-C	0.999	3E-6	(AA)	0.359	unit increase	Illumina [NR] (imputed)	N
675	chr6	11811313	11811314	rs3950186	24047446	Schosser A	2013-09-19	World J Biol Psychiatry	Genome-wide association study of co-occurring anxiety in major depression.	Anxiety and major depressive disorder	1,080 European ancestry cases, 1,588 European ancestry controls	NA	6p24.1	C6orf105	rs3950186-T	0.338	8E-6		1.319	[NR]	Illumina [471581]	N
675	chr6	11815508	11815509	rs6457867	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	6p24.1	NR	rs6457867-?	NR	6E-9				Affymetrix [NR]	N
675	chr6	11825447	11825448	rs112279589	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Spatial processing	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	6p24.1	ADTRP	rs112279589-G	NR	5E-6		0.6150019	[0.34-0.89] unit decrease	Illumina [> 6200000] (imputed)	N
675	chr6	11825863	11825864	rs1569733	28957384	Kim SK	2017-09-28	PLoS One	Two genetic loci associated with ankle injury.	Ankle injury	1,421 European ancestry cases, 154 Hispanic/Latino cases, 121 East Asian ancestry cases, 81,843 European ancestry controls, 8,406 Hispanic/Latino controls, 7,397 East Asian ancestry controls	NA	6p24.1	NR	rs1569733-T	NR	1E-7		1.3426		Affymetrix [8183964] (imputed)	N
675	chr6	11839041	11839042	rs147539187	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	6p24.1	NR	rs147539187-C	0.926256	1E-7		0.0211544	[0.013-0.029] unit increase	Affymetrix [NR] (imputed)	N
675	chr6	11839041	11839042	rs147539187	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	6p24.1	ADTRP	rs147539187-C	0.926256	1E-8		0.0227989	[0.015-0.031] unit increase	Affymetrix [NR] (imputed)	N
675	chr6	11856256	11856256	rs771191353	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	6p24.1	NR	rs771191353-?	NR	2E-8		0.0264	[0.018-0.035] unit decrease	Affymetrix [5701386] (imputed)	N
675	chr6	11868513	11868514	rs9470298	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	6p24.1	NR	rs9470298-T	0.908377	5E-18		0.0285705	[0.022-0.035] unit increase	Affymetrix [15000001]	N
675	chr6	11899176	11899176	rs775204216	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p24.1	ADTRP	rs775204216-GTAAA	0.0988106	8E-9	(-442 ms)	0.0576778	[0.038-0.077] unit decrease	Affymetrix [10000000] (imputed)	N
675	chr6	11899176	11899176	rs775204216	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p24.1	ADTRP	rs775204216-GTAAA	0.0988106	7E-9	(-448 ms)	0.0579183	[0.038-0.078] unit decrease	Affymetrix [10000000] (imputed)	N
675	chr6	11899176	11899176	rs775204216	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p24.1	ADTRP	rs775204216-GTAAA	0.0988106	5E-9	(-438 ms)	0.0585794	[0.039-0.078] unit decrease	Affymetrix [10000000] (imputed)	N
675	chr6	11899176	11899176	rs775204216	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p24.1	ADTRP	rs775204216-GTAAA	0.0988106	4E-8	(-428 ms)	0.0550813	[0.035-0.075] unit decrease	Affymetrix [10000000] (imputed)	N
675	chr6	11899176	11899176	rs775204216	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p24.1	ADTRP	rs775204216-GTAAA	0.0988106	3E-8	(-444 ms)	0.0554197	[0.036-0.075] unit decrease	Affymetrix [10000000] (imputed)	N
675	chr6	11899176	11899176	rs775204216	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p24.1	ADTRP	rs775204216-GTAAA	0.0988106	3E-8	(-432 ms)	0.055698	[0.036-0.075] unit decrease	Affymetrix [10000000] (imputed)	N
675	chr6	11899176	11899176	rs775204216	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p24.1	ADTRP	rs775204216-GTAAA	0.0988106	2E-8	(-450 ms)	0.0561754	[0.037-0.076] unit decrease	Affymetrix [10000000] (imputed)	N
675	chr6	11899176	11899176	rs775204216	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p24.1	ADTRP	rs775204216-GTAAA	0.0988106	1E-9	(-440 ms)	0.0608867	[0.041-0.08] unit decrease	Affymetrix [10000000] (imputed)	N
675	chr6	11899176	11899176	rs775204216	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p24.1	ADTRP	rs775204216-GTAAA	0.0988106	1E-8	(-446 ms)	0.0568016	[0.037-0.076] unit decrease	Affymetrix [10000000] (imputed)	N
675	chr6	11899176	11899176	rs775204216	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p24.1	ADTRP	rs775204216-GTAAA	0.0988106	1E-8	(-430 ms)	0.0571267	[0.038-0.077] unit decrease	Affymetrix [10000000] (imputed)	N
676	chr6	11938671	11938672	rs6904014	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p24.1	LOC389369, HIVEP1	rs6904014-T	0.02	5E-6	(EA)	3.85	[2.07-7.19]	Illumina [up to 547389]	N
676	chr6	11943525	11943526	rs1205863	22993228	Williams FM	2012-09-19	Ann Rheum Dis	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NA	6p24.1	intergenic	rs1205863-G	0.06	6E-6		0.21	[0.12-0.30] unit increase	Affymetrix, Illumina [2552511] (imputed)	N
676	chr6	11945481	11945482	rs4714052	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	6p24.1		rs4714052-G	0.216	3E-11		0.01	[0.008-0.012] unit increase	NR [NR] (imputed)	N
676	chr6	11946032	11946033	rs199498281	33407418	Jonsson A	2021-01-06	BMC Med Genomics	Genome-wide association study of circulating levels of glucagon during an oral glucose tolerance test.	Glucagon levels in response to oral glucose tolerance test (decremental area under the curve for 0-120 minutes)	553 European ancestry individuals, 1,346 individuals	NA	6p24.1	NR	rs199498281-T	0.0153	7E-6		1.1447	[0.64-1.65] unit increase	Illumina [NR] (imputed)	N
676	chr6	11959835	11959836	rs10456089	34054130	Bralten J	2021-05-30	Neuropsychopharmacology	Genetic underpinnings of sociability in the general population.	Worry too long after an embarrassing experience	342,461 European ancestry individuals	NA	6p24.1	RP11-456H18.1	rs10456089-?	NR	9E-7				Affymetrix [up to 9327396] (imputed)	N
676	chr6	11959835	11959836	rs10456089	34054130	Bralten J	2021-05-30	Neuropsychopharmacology	Genetic underpinnings of sociability in the general population.	Sociability score	342,461 European ancestry individuals	NA	6p24.1	RP11-456H18.1	rs10456089-A	NR	3E-9		0.02434	unit increase	Affymetrix [9327396] (imputed)	N
676	chr6	11959835	11959836	rs10456089	34054130	Bralten J	2021-05-30	Neuropsychopharmacology	Genetic underpinnings of sociability in the general population.	Loneliness	342,461 European ancestry individuals	NA	6p24.1	RP11-456H18.1	rs10456089-?	NR	2E-8				Affymetrix [up to 9327396] (imputed)	N
676	chr6	11959835	11959836	rs10456089	31518406	Abdellaoui A	2019-09-13	Hum Mol Genet	Phenome-wide investigation of health outcomes associated with genetic predisposition to loneliness.	Loneliness	511,280 European ancestry individuals	NA	6p24.1	intergenic	rs10456089-?	NR	2E-8		0.04	[0.028-0.052] unit increase	Affymetrix, Illumina [up to 14113458] (imputed)	N
676	chr6	11959835	11959836	rs10456089	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	6p24.1		rs10456089-?	NR	3E-10				NR [~ 8900000] (imputed)	N
676	chr6	11959835	11959836	rs10456089	29970889	Day FR	2018-07-03	Nat Commun	Elucidating the genetic basis of social interaction and isolation.	Loneliness (MTAG)	487,647 European ancestry individuals	NA	6p24.1	ADTRP, HIVEP1	rs10456089-G	0.920701	9E-9		0.02174949	[0.014-0.029] unit increase	NR [NR] (imputed)	N
676	chr6	11959835	11959836	rs10456089	29970889	Day FR	2018-07-03	Nat Commun	Elucidating the genetic basis of social interaction and isolation.	Loneliness	80,134 European ancestry cases, 364,890 European ancestry controls	NA	6p24.1	ADTRP, HIVEP1	rs10456089-G	0.921	3E-9		0.0093	[0.0062-0.0124] unit increase	NR [NR] (imputed)	N
676	chr6	11959835	11959836	rs10456089	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	6p24.1	NR	rs10456089-A	0.0758129	4E-9		5.89	z score decrease	NR [10847151] (imputed)	N
676	chr6	11961950	11961951	rs169716	34356046	Oluwafemi OO	2021-07-01	Genes (Basel)	Genome-Wide Association Studies of Conotruncal Heart Defects with Normally Related Great Vessels in the United States.	Conotruncal heart defects with normally related great vessels (without 22q.11.2 deletion syndrome)	294 European ancestry cases, 2,976 European ancestry controls, 641 trios	NA	6p24.1		rs169716-?	NR	7E-6				Illumina [3311160] (imputed)	N
676	chr6	11972741	11972742	rs913021	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	6p24.1	NR	rs913021-T	0.64044612163122	5E-9		0.0074812504	[0.005-0.01] unit increase	NR [NR]	N
676	chr6	11980751	11980752	rs2031595	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	6p24.1	NR	rs2031595-T	NR	3E-10		6.301	z score decrease	Affymetrix [10847151] (imputed)	N
676	chr6	11988080	11988081	rs9470670	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p24.1	RP11-456H18.1	rs9470670-G	0.153408	7E-10		0.018750938	[0.013-0.025] unit increase	Affymetrix [93095623] (imputed)	N
676	chr6	11991238	11991239	rs9380700	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	6p24.1	NR	rs9380700-A	0.248961518193329	5E-10		0.006594984	[0.0045-0.0087] unit decrease	NR [NR]	N
676	chr6	11994761	11994762	rs2148254	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Neuroticism	274,107 British ancestry individuals	NA	6p24.1	NR	rs2148254-G	0.4928	4E-9		0.01133	[0.0076-0.0151] unit decrease	NR [8968716] (imputed)	N
676	chr6	11995806	11995807	rs9380702	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	6p24.1	RP11-456H18.1	rs9380702-A	0.2686	5E-6		0.035	[0.02-0.05] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
676	chr6	11997049	11997050	rs9462364	31972866	Nagel M	2020-01-23	Acta Psychiatr Scand	Genome-wide association study of the sensitivity to environmental stress and adversity (SESA) neuroticism cluster.	Sensitivity to environmental stress and adversity	351,827 European ancestry individuals	NA	6p24.1	NR	rs9462364-A	NR	9E-9		0.01348	NR unit decrease	NR [7259579]	N
676	chr6	11997049	11997050	rs9462364	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling worry	372,869 European ancestry individuals	NA	6p24.1	HIVEP1	rs9462364-A	0.494176	3E-9		5.918	unit decrease	NR [10847151] (imputed)	N
676	chr6	11999292	11999293	rs6921878	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	6p24.1	NR	rs6921878-T	NR	4E-8		5.473	z score increase	Affymetrix [10847151] (imputed)	N
676	chr6	12008261	12008262	rs2296576	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	6p24.1	NR	rs2296576-C	0.669079558941677	2E-9		0.0073437854	[0.0049-0.0097] unit increase	NR [NR]	N
676	chr6	12008261	12008262	rs2296576	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	6p24.1	NR	rs2296576-C	0.669079558941677	1E-9		0.009577898	[0.0065-0.0127] unit increase	NR [NR]	N
676	chr6	12008261	12008262	rs2296576	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	6p24.1	NR	rs2296576-C	0.669079558941677	3E-9		0.006053247	[0.0041-0.0081] unit increase	NR [NR]	N
676	chr6	12009255	12009256	rs13196360	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	6p24.1	HIVEP1	rs13196360-T	0.5	2E-11		0.0079	[0.0055-0.0103] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
676	chr6	12044975	12044976	rs9470844	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	6p24.1	HIVEP1	rs9470844-A	0.226959	2E-11		0.017733984	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
676	chr6	12044975	12044976	rs9470844	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	6p24.1	NR	rs9470844-G	0.773393	4E-14		0.016965	[0.013-0.021] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
676	chr6	12048826	12048827	rs1570989	22488850	Zuo L	2012-04-04	Am J Med Genet B Neuropsychiatr Genet	Genome-wide search for replicable risk gene regions in alcohol and nicotine co-dependence.	Alcohol and nicotine co-dependence	818 European ancestry cases, 1,396 European ancestry controls, 449 African American cases, 480 African American controls	NA	6p24.1	HIVEP1	rs1570989-?	NR	2E-6				Illumina [805814]	N
676	chr6	12056770	12056771	rs12196128	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p24.1	NR	rs12196128-A	0.214302	1E-11				Affymetrix, Illumina [23467995] (imputed)	N
677	chr6	12086825	12086826	rs4467770	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	6p24.1		rs4467770-A	NR	5E-12		0.0147	[0.011-0.019] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
677	chr6	12086825	12086826	rs4467770	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		6p24.1	HIVEP1	rs4467770-G	0.268921	2E-10		0.00986966	[0.0068-0.0129] unit decrease	Affymetrix [12370749]	N
677	chr6	12117343	12117344	rs4377779	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	6p24.1		rs4377779-T	0.65	1E-11				NR [NR] (imputed)	N
677	chr6	12117343	12117344	rs4377779	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	6p24.1		rs4377779-T	0.65	1E-12		0.011	% increase	NR [NR] (imputed)	N
677	chr6	12122101	12122102	rs79027391	31620175	Kornilov SA	2019-09-18	Front Genet	Genome-Wide Homozygosity Mapping Reveals Genes Associated With Cognitive Ability in Children From Saudi Arabia.	Figural/spatial cognitive ability	354 Saudi Arabian ancestry children	NA	6p24.1	HIVEP1	rs79027391-?	NR	1E-6		20.01	[12.01-28.01] unit decrease	Illumina [285340]	N
677	chr6	12124854	12124855	rs2228213	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	6p24.1	NA	rs2228213-A	0.3374	6E-17		0.0144	[0.011-0.018] unit decrease	NR [~ 27400000] (imputed)	N
677	chr6	12124854	12124855	rs2228213	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	6p24.1	NA	rs2228213-A	0.3374	5E-17		0.0144	[0.011-0.018] unit decrease	NR [~ 27400000] (imputed)	N
677	chr6	12124854	12124855	rs2228213	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	6p24.1	NA	rs2228213-A	0.3374	5E-17		0.0144	[0.011-0.018] unit decrease	NR [~ 27400000] (imputed)	N
677	chr6	12124854	12124855	rs2228213	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	6p24.1	NR	rs2228213-G	NR	3E-7		0.014	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
677	chr6	12124854	12124855	rs2228213	29273807	Turcot V	2017-12-22	Nat Genet	Protein-altering variants associated with body mass index implicate pathways that control energy intake and expenditure in obesity.	Body mass index	up to 449,889 European ancestry individuals, up to 29,398 South Asian ancestry individuals, up to 27,610 African American individuals, up to 8,839 East Asian individuals, up to 10,772 Hispanic ancestry individuals	up to 196,766 European ancestry individuals	6p24.1	HIVEP1	rs2228213-G	0.6698999999999999	3E-13		0.0137	[0.01-0.0174] unit increase	Illumina [246328]	N
677	chr6	12124854	12124855	rs2228213	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	6p24.1	HIVEP1	rs2228213-A	0.33	1E-10		0.016	[0.01-0.022] unit decrease	Illumina [6108953] (imputed)	N
677	chr6	12124854	12124855	rs2228213	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	6p24.1	ADTRP, EDN1, RNU6-48	rs2228213-A	0.350367241144557	2E-9		0.016712787	unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
677	chr6	12124854	12124855	rs2228213	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	6p24.1	HIVEP1	rs2228213-G	0.652	3E-7		0.016	[0.0095-0.0217] kg/m2 increase	Affymetrix, Illumina [2550021]	N
677	chr6	12124854	12124855	rs2228213	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	6p24.1	HIVEP1	rs2228213-G	0.649	4E-6	(EA, women)	0.019	[0.011-0.027] kg/m2 increase	Affymetrix, Illumina [2550021]	N
677	chr6	12124854	12124855	rs2228213	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	6p24.1	HIVEP1	rs2228213-G	0.647	1E-6	(EA)	0.016	[0.0094-0.0224] kg/m2 increase	Affymetrix, Illumina [2550021]	N
677	chr6	12131662	12131662	rs35625775	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	6p24.1		rs35625775-CT	NR	1E-8		0.015	[0.0099-0.0201] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
677	chr6	12142218	12142219	rs9369108	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	6p24.1		rs9369108-?	NR	6E-8				NR [~ 8900000] (imputed)	N
677	chr6	12142816	12142817	rs10947793	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	6p24.1		rs10947793-G	NR	5E-14		0.0132	[0.0099-0.0165] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
677	chr6	12142816	12142817	rs10947793	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6p24.1	NR	rs10947793-?	NR	7E-12				Affymetrix [~ 8270000] (imputed)	N
677	chr6	12142816	12142817	rs10947793	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	6p24.1		rs10947793-?	NR	1E-12				NR [~ 8900000] (imputed)	N
677	chr6	12155114	12155116	rs34125199	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	6p24.1	HIVEP1	rs34125199-D	0.3497	1E-8		1.0377898		Affymetrix [11880941] (imputed)	N
677	chr6	12159698	12159699	rs3777755	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	334,944 European ancestry, NR ancestry individuals	NA	6p24.1		rs3777755-?	NR	5E-8				Affymetrix [NR] (imputed)	N
677	chr6	12159698	12159699	rs3777755	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	6p24.1	HIVEP1	rs3777755-T	0.3098	3E-9		0.013901786	[0.0093-0.0185] unit increase	Affymetrix [93095623] (imputed)	N
677	chr6	12159698	12159699	rs3777755	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	6p24.1	HIVEP1	rs3777755-T	0.309782	8E-15		0.01860564	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
677	chr6	12159698	12159699	rs3777755	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	6p24.1	HIVEP1	rs3777755-T	0.3098	8E-10		0.014689869	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
677	chr6	12159698	12159699	rs3777755	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	6p24.1	HIVEP1	rs3777755-T	0.309776	4E-16		0.019480884	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
677	chr6	12159698	12159699	rs3777755	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p24.1	NR	rs3777755-T	0.299603	1E-10				Affymetrix, Illumina [23114412] (imputed)	N
677	chr6	12159698	12159699	rs3777755	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	6p24.1	NR	rs3777755-T	0.311419	5E-11		0.0137	[0.0096-0.0178] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
677	chr6	12159698	12159699	rs3777755	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	6p24.1	HIVEP1	rs3777755-C	0.7	5E-9				NR [> 9500000] (imputed)	N
677	chr6	12159698	12159699	rs3777755	27659466	van der Harst P	2016-09-27	J Am Coll Cardiol	52 Genetic Loci Influencing Myocardial Mass.	QRS complex (12-leadsum)	up to 47,942 European ancestry individuals, up to 690 Orcadian (founder/genetic isolate) individuals	13,263 European ancestry individuals, 3,603 African American individuals, 4,619 Indian ancestry individuals	6p24.1	NR	rs3777755-?	NR	3E-8	(EA)			Affymetrix, Illumina, Perlegen [2766983] (imputed)	N
678	chr6	12197212	12197213	rs1040994	19721433	McClay JL	2009-09-01	Mol Psychiatry	Genome-wide pharmacogenomic analysis of response to treatment with antipsychotics.	Response to antipsychotic treatment	494 European ancestry cases, 244 African American and other ancestry cases	NA	6p24.1	intergenic	rs1040994-?	NR	2E-6	(olanzapine)	9.0	[NR] % variance	Affymetrix, Perlegen [492900]	N
678	chr6	12217421	12217422	rs7356945	27515689	Kerns SL	2016-07-20	EBioMedicine	Meta-analysis of Genome Wide Association Studies Identifies Genetic Markers of Late Toxicity Following Radiotherapy for Prostate Cancer.	Response to radiotherapy in prostate cancer (toxicity, urinary frequency)	1,409 European ancestry individuals	NA	6p24.1	intergenic	rs7356945-T	0.33	4E-6		1.74	[1.38-2.21]	NR [~ 38000000] (imputed)	N
678	chr6	12237090	12237091	rs144028485	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	6p24.1	EDN1	rs144028485-A	0.0122457001843572	7E-6	(G_Odoribacter_HB)	1.35071	[0.76-1.94] unit decrease	Illumina [7711310] (imputed)	N
678	chr6	12241824	12241825	rs9380938	27021288	Brevik EJ	2016-03-29	Am J Med Genet B Neuropsychiatr Genet	Genome-wide analyses of aggressiveness in attention-deficit hyperactivity disorder.	Oppositional defiant disorder dimensions in attention-deficit hyperactivity disorder	750 European ancestry child cases	NA	6p24.1	EDN1	rs9380938-G	NR	7E-6	(Defiant/Vindictive dimension)	1.036	[0.59-1.48] unit increase	Illumina [1871025] (imputed)	N
678	chr6	12274146	12274147	rs148464215	34154395	Brikell I	2021-06-22	Am J Psychiatry	Genetic, Clinical, and Sociodemographic Factors Associated With Stimulant Treatment Outcomes in ADHD.	Switch to non-stimulant treatment in ADHD	1,137 European ancestry cases, 3,854 European ancestry controls	NA	6p24.1		rs148464215-T	0.012	2E-6		0.138	[0.081-0.195] unit increase	Illumina [6361597] (imputed)	N
678	chr6	12288421	12288422	rs2859337	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	6p24.1	EDN1	rs2859337-G	0.752018	1E-14		0.019748699	[0.015-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
678	chr6	12288421	12288422	rs2859337	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p24.1	NR	rs2859337-G	0.770616	7E-10				Affymetrix, Illumina [24332387] (imputed)	N
678	chr6	12288421	12288422	rs2859337	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p24.1	NR	rs2859337-G	0.769907	5E-14				Affymetrix, Illumina [24653286] (imputed)	N
678	chr6	12288421	12288422	rs2859337	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	6p24.1	NR	rs2859337-G	0.750394	1E-15		0.01731	[0.013-0.022] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
678	chr6	12288421	12288422	rs2859337	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p24.1	NR	rs2859337-G	0.769523	1E-14				Affymetrix, Illumina [24558453] (imputed)	N
678	chr6	12288421	12288422	rs2859337	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	6p24.1	NR	rs2859337-G	0.750486	7E-16		0.017431	[0.013-0.022] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
678	chr6	12291981	12291982	rs2248580	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	6p24.1		rs2248580-A	NR	2E-8		0.0091	[0.006-0.0122] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
678	chr6	12292771	12292772	rs2070699	31089142	Law PJ	2019-05-14	Nat Commun	Association analyses identify 31 new risk loci for colorectal cancer susceptibility.	Colorectal cancer	31,197 European ancestry cases, 61,770 European ancestry controls	NA	6p24.1	NR	rs2070699-T	0.48	4E-9		1.07	[1.04-1.09]	Affymetrix, Illumina [> 10000000] (imputed)	N
678	chr6	12294257	12294258	rs5369	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	6p24.1		rs5369-G	NR	1E-11		0.019	[0.014-0.024] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
678	chr6	12294257	12294258	rs5369	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	6p24.1		rs5369-G	NR	5E-13		0.0208	[0.015-0.026] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
678	chr6	12294257	12294258	rs5369	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	6p24.1	EDN1	rs5369-G	0.87768	3E-16		0.027474163	[0.021-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
678	chr6	12294861	12294862	rs1794849	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	6p24.1		rs1794849-C	NR	5E-13		0.0161	[0.012-0.02] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
678	chr6	12294861	12294862	rs1794849	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	6p24.1		rs1794849-?	NR	3E-16				NR [~ 8900000] (imputed)	N
678	chr6	12295875	12295876	rs1629862	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	6p24.1	EDN1	rs1629862-G	0.877627	7E-15		0.025786404	[0.019-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
678	chr6	12295875	12295876	rs1629862	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	6p24.1	EDN1	rs1629862-A	0.127	2E-7		0.054	[0.034-0.074] unit decrease	Affymetrix [7947838] (imputed)	N
678	chr6	12295986	12295987	rs1630736	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta minimum area	35,110 individuals	NA	6p24.1		rs1630736-C	0.538229	5E-13		0.049326	[0.036-0.063] decrease	Affymetrix [NR]	N
678	chr6	12295986	12295987	rs1630736	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta maximum area	31,908 individuals	NA	6p24.1		rs1630736-C	0.536984	2E-12		0.0526776	[0.038-0.067] decrease	Affymetrix [NR]	N
678	chr6	12295986	12295987	rs1630736	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	6p24.1		rs1630736-?	NR	4E-8				NR [~ 8900000] (imputed)	N
678	chr6	12295986	12295987	rs1630736	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	6p24.1	EDN1	rs1630736-T	0.4609	4E-10		0.1271	[0.087-0.167] mmHg decrease	Affymetrix [NR] (imputed)	N
678	chr6	12295986	12295987	rs1630736	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	6p24.1	EDN1	rs1630736-T	0.464	7E-14		0.1319	[0.097-0.166] unit decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
678	chr6	12296254	12296255	rs5370	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	6p24.1		rs5370-T	0.2159	8E-9		0.14867547	[0.096-0.202] mmHg increase	Affymetrix, Illumina [242865] (imputed)	N
678	chr6	12296254	12296255	rs5370	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	6p24.1		rs5370-T	0.2158	8E-14		0.13944386	[0.1-0.18] mmHg increase	Affymetrix, Illumina [242866] (imputed)	N
678	chr6	12296254	12296255	rs5370	23381795	Verweij N	2013-02-04	Hypertension	Genome-wide association study on plasma levels of midregional-proadrenomedullin and C-terminal-pro-endothelin-1.	Circulating vasoactive peptide levels	3,444 European ancestry individuals	3,230 European ancestry individuals	6p24.1	EDN1	rs5370-T	0.22	1E-27	(ET)	2.955	[2.42-3.49] pmol/l increase	Illumina [2269099] (imputed)	N
679	chr6	12345692	12345693	rs16872704	27629089	Sailer A	2016-09-14	Neurology	A genome-wide association study in multiple system atrophy.	Multiple system atrophy	918 European ancestry cases, 3,864 European ancestry controls	NA	6p24.1	EDN1	rs16872704-A	0.84	4E-7		1.51		Illumina [4903804] (imputed)	N
679	chr6	12371710	12371711	rs4714473	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6p24.1	HIVEP1	rs4714473-?	NR	8E-6	(SM 22:0)	0.32185197	[0.18-0.46] unit increase	Affymetrix [at least 2500000] (imputed)	N
679	chr6	12392222	12392223	rs35514914	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	6p24.1	EDN1	rs35514914-C	0.069331523874006	4E-7	(G_Dialister_RNT)	0.32766	[0.2-0.45] unit increase	Illumina [7711310] (imputed)	N
679	chr6	12445846	12445847	rs9462794	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Pulse pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	6p24.1	PHACTR1	rs9462794-T	0.388668531	3E-6		0.1568	[0.091-0.223] unit increase	Affymetrix [~ 9800000] (imputed)	N
680	chr6	12463571	12463572	rs111797764	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Varicose veins	22,037 European ancestry cases, 437,665 European ancestry controls, 474 East Asian ancestry cases, 178,252 East Asian ancestry controls	NA	6p24.1		rs111797764-T	NR	2E-10		0.1292	[0.089-0.169] unit increase	Affymetrix, Illumina [25842955] (imputed)	N
680	chr6	12510126	12510127	rs12198798	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6p24.1	RPL15P3	rs12198798-G	0.114	1E-6	(BMI z-score change )	0.04	[NR] SD/y increase	Illumina [899892]	N
680	chr6	12511029	12511030	rs12199205	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Uterine fibroids	5,236 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p24.1	Intergenic	rs12199205-?		6E-6		1.11	[1.06-1.16]	Illumina [7645193] (imputed)	N
680	chr6	12533065	12533066	rs34998271	33904754	Cartwright R	2021-04-27	J Urol	Genome Wide Association Study Identifies Two Novel Loci Associated with Female Stress and Urgency Urinary Incontinence.	Urgency urinary incontinence	870 European ancestry cases, 8,109 European ancestry controls	744 European ancestry cases, 3,325 European ancestry controls	6p24.1		rs34998271-A	NR	2E-9		1.7	[1.4-2.07]	Illumina [9700000] (imputed)	N
680	chr6	12544671	12544672	rs2490445	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta minimum area	35,110 individuals	NA	6p24.1		rs2490445-T	0.698876	6E-9		0.0427948	[0.028-0.058] decrease	Affymetrix [NR]	N
680	chr6	12544671	12544672	rs2490445	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta maximum area	31,908 individuals	NA	6p24.1		rs2490445-T	0.699033	3E-8		0.0443613	[0.028-0.06] decrease	Affymetrix [NR]	N
680	chr6	12555873	12555874	rs547691407	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p24.1	PHACTR1	rs547691407-C	0.979416	8E-10	(28 ms)	0.121265	[0.082-0.161] unit decrease	Affymetrix [10000000] (imputed)	N
680	chr6	12555873	12555874	rs547691407	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p24.1	PHACTR1	rs547691407-C	0.979416	4E-9	(38 ms)	0.116583	[0.077-0.156] unit decrease	Affymetrix [10000000] (imputed)	N
680	chr6	12555873	12555874	rs547691407	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p24.1	PHACTR1	rs547691407-C	0.979416	4E-9	(24 ms)	0.116066	[0.077-0.156] unit decrease	Affymetrix [10000000] (imputed)	N
680	chr6	12555873	12555874	rs547691407	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p24.1	PHACTR1	rs547691407-C	0.979416	4E-10	(36 ms)	0.12269	[0.083-0.162] unit decrease	Affymetrix [10000000] (imputed)	N
680	chr6	12555873	12555874	rs547691407	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p24.1	PHACTR1	rs547691407-C	0.979416	1E-9	(34 ms)	0.119084	[0.08-0.158] unit decrease	Affymetrix [10000000] (imputed)	N
680	chr6	12555873	12555874	rs547691407	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p24.1	PHACTR1	rs547691407-C	0.979416	1E-8	(22 ms)	0.112528	[0.073-0.152] unit decrease	Affymetrix [10000000] (imputed)	N
681	chr6	12595274	12595275	rs6927364	34586716	Chen J	2021-09-29	Mol Genet Genomic Med	Heritability and genome-wide association study of blood pressure in Chinese adult twins.	Mean arterial pressure	137 Chinese ancestry twins	NA	6p24.1		rs6927364-?	NR	3E-6				Illumina [7401356] (imputed)	N
682	chr6	12716558	12716559	rs17802893	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	6p24.1		rs17802893-?	NR	5E-8				NR [~ 8900000] (imputed)	N
682	chr6	12722986	12722987	rs560810	32887874	Saw J	2020-09-04	Nat Commun	Chromosome 1q21.2 and additional loci influence risk of spontaneous coronary artery dissection and myocardial infarction.	Spontaneous coronary artery dissection	up to 243 European ancestry cases, up to 23 East Asian ancestry cases, up to 4,816 European ancestry controls, up to 447 East Asian ancestry controls	up to 149 European ancestry cases, up to 14 East Asian ancestry cases, up to 2,935 European ancestry controls, up to 272 East Asian ancestry controls	6p24.1	PHACTR1	rs560810-?	NA	6E-6		0.334	[0.19-0.48] unit increase	Illumina [6690240] (imputed)	N
682	chr6	12768217	12768218	rs12202891	32632093	Guo Y	2020-07-06	Nat Commun	A genome-wide cross-phenotype meta-analysis of the association of blood pressure with migraine.	Migraine and/or systolic blood pressure	757,601 European ancestry individuals with blood pressure measurements, 59,674 European ancestry migraine cases, 316,078 European ancestry controls	NA	6p24.1	NR	rs12202891-?	NR	3E-12				NR [up to 7000000]	N
682	chr6	12768217	12768218	rs12202891	32632093	Guo Y	2020-07-06	Nat Commun	A genome-wide cross-phenotype meta-analysis of the association of blood pressure with migraine.	Migraine and/or pulse pressure	757,601 European ancestry individuals with blood pressure measurements, 59,674 European ancestry migraine cases, 316,078 European ancestry controls	NA	6p24.1	NR	rs12202891-?	NR	1E-21				NR [up to 7000000]	N
682	chr6	12805581	12805582	rs6909834	28077804	Ben-Avraham D	2017-01-10	Aging (Albany NY)	The complex genetics of gait speed: genome-wide meta-analysis approach.	Gait speed in old age	31,478 European ancestry older adults	2,588 European ancestry older adults	6p24.1	PHACTR1	rs6909834-?	NR	1E-6		0.0083	[0.005-0.0116] m/sec decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
682	chr6	12811954	12811955	rs72835688	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	6p24.1		rs72835688-T	NR	9E-9		0.0289	[0.019-0.039] unit decrease	Affymetrix, Illumina [20535842] (imputed)	N
683	chr6	12883523	12883524	rs13208248	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6p24.1		rs13208248-A	0.306	2E-8	(conditional-joint)	0.0085	[0.0056-0.0114] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
683	chr6	12889003	12889004	rs1332844	32632093	Guo Y	2020-07-06	Nat Commun	A genome-wide cross-phenotype meta-analysis of the association of blood pressure with migraine.	Migraine without aura and/or pulse pressure	757,601 European ancestry individuals with blood pressure measurements, up to 59,674 European ancestry migraine cases, 316,078 European ancestry controls	NA	6p24.1	NR	rs1332844-?	NR	3E-28				NR [up to 7000000]	N
683	chr6	12889003	12889004	rs1332844	32632093	Guo Y	2020-07-06	Nat Commun	A genome-wide cross-phenotype meta-analysis of the association of blood pressure with migraine.	Migraine and/or systolic blood pressure	757,601 European ancestry individuals with blood pressure measurements, 59,674 European ancestry migraine cases, 316,078 European ancestry controls	NA	6p24.1	NR	rs1332844-?	NR	1E-19				NR [up to 7000000]	N
683	chr6	12889003	12889004	rs1332844	32632093	Guo Y	2020-07-06	Nat Commun	A genome-wide cross-phenotype meta-analysis of the association of blood pressure with migraine.	Migraine and/or pulse pressure	757,601 European ancestry individuals with blood pressure measurements, 59,674 European ancestry migraine cases, 316,078 European ancestry controls	NA	6p24.1	NR	rs1332844-?	NR	3E-33				NR [up to 7000000]	N
683	chr6	12889003	12889004	rs1332844	21378988	Coronary Artery Disease (C4D) Genetics Consortium	2011-03-06	Nat Genet	A genome-wide association study in Europeans and South Asians identifies five new loci for coronary artery disease.	Coronary heart disease	8,424 European ancestry cases, 7,268 European ancestry controls, 6,996 South Asian ancestry cases, 7,794 South Asian ancestry controls	18,049 European ancestry cases, 16,357 European ancestry controls, 3,359 South Asian ancestry cases, 2,828 South Asian ancestry controls	6p24.1	PHACTR1	rs1332844-T	NR	6E-8		1.11	[1.07-1.15]	Illumina [574919]	N
683	chr6	12901440	12901441	rs9369640	24262325	Dichgans M	2013-11-21	Stroke	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Coronary artery disease	33,398 cases, 75,726 controls	NA	6p24.1	PHACTR1	rs9369640-?	NR	3E-11		1.0989	[1.08-1.14]	Illumina [575000] (imputed)	N
683	chr6	12903434	12903435	rs4714955	24262325	Dichgans M	2013-11-21	Stroke	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Coronary artery disease or large artery stroke	2,167 Large artery stroke cases, 22,233 Coronary artery disease cases, ~ 75,921 controls	NA	6p24.1	PHACTR1	rs4714955-?		2E-11				Affymetrix, Illumina [up to 2500000] (imputed)	N
683	chr6	12903434	12903435	rs4714955	24262325	Dichgans M	2013-11-21	Stroke	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Coronary artery disease or ischemic stroke	12,389 Ischemic stroke cases, 22,233 Coronary artery disease cases, ~ 88,766 controls	NA	6p24.1	PHACTR1	rs4714955-?		4E-11				Affymetrix, Illumina [up to 2500000] (imputed)	N
683	chr6	12903956	12903957	rs9349379	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Unstable angina pectoris	9,481 European ancestry cases, 446,987 European ancestry controls, 5,891 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	6p24.1		rs9349379-G	NR	4E-22		0.1281	[0.1-0.15] unit increase	Affymetrix, Illumina [25840389] (imputed)	N
683	chr6	12903956	12903957	rs9349379	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Unstable angina pectoris	5,891 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	6p24.1		rs9349379-G	0.647598886	1E-9		0.13554353	[0.092-0.179] unit increase	Illumina [13425416] (imputed)	N
683	chr6	12903956	12903957	rs9349379	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	6p24.1		rs9349379-G	NR	2E-11		0.0132	[0.0093-0.0171] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
683	chr6	12903956	12903957	rs9349379	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Stable angina pectoris	18,833 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	6p24.1		rs9349379-G	0.647598886	5E-15		0.106482655	[0.08-0.133] unit increase	Illumina [13427711] (imputed)	N
683	chr6	12903956	12903957	rs9349379	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Stable angina pectoris	17,894 European ancestry cases, 325,132 European ancestry controls, 18,833 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	6p24.1		rs9349379-G	NR	2E-26		0.0947	[0.077-0.112] unit increase	Affymetrix, Illumina [20456336] (imputed)	N
683	chr6	12903956	12903957	rs9349379	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	6p24.1		rs9349379-G	NR	7E-22		0.0182	[0.014-0.022] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
683	chr6	12903956	12903957	rs9349379	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	20,917 European ancestry cases, 440,906 European ancestry controls, 14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	6p24.1		rs9349379-G	NR	4E-63		0.1544	[0.14-0.17] unit increase	Affymetrix, Illumina [25841367] (imputed)	N
683	chr6	12903956	12903957	rs9349379	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	6p24.1		rs9349379-G	0.647598886	4E-33		0.18504153	[0.15-0.22] unit increase	Illumina [13427135] (imputed)	N
683	chr6	12903956	12903957	rs9349379	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (vasodilators used in cardiac diseases)	5,546 European ancestry cases, 237,113 European ancestry controls, 17,050 East Asian ancestry cases, 161,676 East Asian ancestry controls	NA	6p24.1		rs9349379-G	NR	7E-16		0.0909	[0.069-0.113] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
683	chr6	12903956	12903957	rs9349379	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (vasodilators used in cardiac diseases)	17,050 East Asian ancestry cases, 161,676 East Asian ancestry controls	NA	6p24.1		rs9349379-G	0.652056736	2E-11		0.09242389	[0.065-0.119] unit increase	Illumina [13429980] (imputed)	N
683	chr6	12903956	12903957	rs9349379	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (salicylic acid and derivatives)	61,583 European ancestry cases, 50,427 European ancestry controls, 41,461 East Asian ancestry cases, 137,265 East Asian ancestry controls	NA	6p24.1		rs9349379-G	NR	2E-8		0.0346	[0.022-0.047] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
683	chr6	12903956	12903957	rs9349379	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (salicylic acid and derivatives)	41,461 East Asian ancestry cases, 137,265 East Asian ancestry controls	NA	6p24.1		rs9349379-G	0.652056736	3E-9		0.057545826	[0.039-0.077] unit increase	Illumina [13429980] (imputed)	N
683	chr6	12903956	12903957	rs9349379	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antithrombotic agents)	54,220 East Asian ancestry cases, 124,506 East Asian ancestry controls	NA	6p24.1		rs9349379-G	0.652056736	5E-9		0.053056534	[0.035-0.071] unit increase	Illumina [13429980] (imputed)	N
683	chr6	12903956	12903957	rs9349379	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antimigraine preparations)	5,521 European ancestry cases, 114,323 European ancestry controls, 387 East Asian ancestry cases, 178,339 East Asian ancestry controls	NA	6p24.1		rs9349379-G	NR	2E-20		0.1775	[0.14-0.21] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
683	chr6	12903956	12903957	rs9349379	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Angina pectoris	30,025 European ancestry cases, 440,906 European ancestry controls, 14,007 East Asian ancestry cases, 145,158 East Asian ancestry controls	NA	6p24.1		rs9349379-G	NR	3E-30		0.0937	[0.078-0.11] unit increase	Affymetrix, Illumina [25842036] (imputed)	N
683	chr6	12903956	12903957	rs9349379	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Angina pectoris	14,007 East Asian ancestry cases, 145,158 East Asian ancestry controls	NA	6p24.1		rs9349379-G	0.647498547	6E-11		0.09955331	[0.07-0.129] unit increase	Illumina [13426705] (imputed)	N
683	chr6	12903956	12903957	rs9349379	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	6p24.1	PHACTR1	rs9349379-G	0.406157	2E-60		1.13	[1.12-1.15]	NR [8126035] (imputed)	N
683	chr6	12903956	12903957	rs9349379	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 2,680 cases, 380,970 European ancestry controls, 73,242 controls	NA	6p24.1	PHACTR1	rs9349379-G	0.401524	1E-27		1.13	[1.10-1.15]	NR [10903881] (imputed)	N
683	chr6	12903956	12903957	rs9349379	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	6p24.1	PHACTR1	rs9349379-?	NR	4E-104		0.110473	[0.1-0.12] unit increase	Illumina [4804024] (imputed)	N
683	chr6	12903956	12903957	rs9349379	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 142,336 Japanese ancestry controls	NA	6p24.1	PHACTR1	rs9349379-?	NR	5E-29		0.123682	[0.1-0.15] unit increase	Illumina [19707525] (imputed)	N
683	chr6	12903956	12903957	rs9349379	32887874	Saw J	2020-09-04	Nat Commun	Chromosome 1q21.2 and additional loci influence risk of spontaneous coronary artery dissection and myocardial infarction.	Spontaneous coronary artery dissection	up to 243 European ancestry cases, up to 23 East Asian ancestry cases, up to 4,816 European ancestry controls, up to 447 East Asian ancestry controls	up to 149 European ancestry cases, up to 14 East Asian ancestry cases, up to 2,935 European ancestry controls, up to 272 East Asian ancestry controls	6p24.1	PHACTR1	rs9349379-A	0.62	4E-8		0.403	[0.26-0.55] unit decrease	Illumina [6690240] (imputed)	N
683	chr6	12903956	12903957	rs9349379	32887874	Saw J	2020-09-04	Nat Commun	Chromosome 1q21.2 and additional loci influence risk of spontaneous coronary artery dissection and myocardial infarction.	Spontaneous coronary artery dissection	up to 221 European ancestry female cases, up to 20 East Asian ancestry female cases, up to 4,258 European ancestry female controls, up to 395 East Asian ancestry female controls	up to 134 European ancestry female cases, up to 12 East Asian ancestry female cases, up to 2,608 European ancestry female controls, up to 242 East Asian female controls	6p24.1	PHACTR1	rs9349379-A	0.6175	5E-7		0.3921	[0.24-0.55] unit increase	Illumina [6690240] (imputed)	N
683	chr6	12903956	12903957	rs9349379	32374345	Turley TN	2020-05-06	JAMA Cardiol	Identification of Susceptibility Loci for Spontaneous Coronary Artery Dissection.	Spontaneous coronary artery dissection	484 European ancestry cases, 1,477 European ancestry controls	183 European ancestry cases, 340 European ancestry controls	6p24.1	PHACTR1	rs9349379-A	0.59	5E-14		1.71	[1.49-1.97]	Illumina [~ 5000000] (imputed)	N
683	chr6	12903956	12903957	rs9349379	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (antimigraine preparations)	5,521 European ancestry cases, 114,323 European ancestry controls	NA	6p24.1	PHACTR1	rs9349379-G	0.402462	5E-20		0.18023424	[0.14-0.22] unit decrease	Affymetrix [7288503] (imputed)	N
683	chr6	12903956	12903957	rs9349379	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Alcohol consumption (drinks per week)	up to 357,854 European ancestry individuals	NA	6p24.1	PHACTR1	rs9349379-G	0.406	3E-8		0.0134	[0.0087-0.0181] unit increase	Illumina [~ 250000] (imputed)	N
683	chr6	12903956	12903957	rs9349379	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Alcohol consumption (drinks per week)	414,343 European ancestry individuals	NA	6p24.1	PHACTR1	rs9349379-A	0.5942	5E-9		0.013316712	[0.0089-0.0178] unit decrease	Affymetrix [11514936] (imputed)	N
683	chr6	12903956	12903957	rs9349379	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	6p24.1		rs9349379-?	NR	7E-12				NR [~ 8900000] (imputed)	N
683	chr6	12903956	12903957	rs9349379	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	6p24.1	PHACTR1	rs9349379-G	0.6016	2E-10		0.2254	[0.16-0.29] mmHg increase	Affymetrix [NR] (imputed)	N
683	chr6	12903956	12903957	rs9349379	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	6p24.1	PHACTR1	rs9349379-G	0.6014	2E-20		0.2448	[0.19-0.3] mmHg increase	Affymetrix [NR] (imputed)	N
683	chr6	12903956	12903957	rs9349379	30104761	Zhou W	2018-08-13	Nat Genet	Efficiently controlling for case-control imbalance and sample relatedness in large-scale genetic association studies.	Coronary artery disease	31,355 European ancestry cases, 377,103 European ancestry controls	NA	6p24.1	PHACTR1	rs9349379-G	0.405	6E-19				Affymetrix [28000000] (imputed)	N
683	chr6	12903956	12903957	rs9349379	29397368	Meng W	2018-01-31	EBioMedicine	A Genome-Wide Association Study Finds Genetic Associations with Broadly-Defined Headache in UK Biobank (N=223,773).	Headache	74,461 British ancestry cases, 149,321 British ancestry controls	NA	6p24.1	PHACTR1	rs9349379-G	NR	4E-15		0.011	[0.0083-0.0137] unit decrease	Affymetrix [9304965] (imputed)	N
683	chr6	12903956	12903957	rs9349379	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	6p24.1	PHACTR1	rs9349379-A	0.5907	3E-76		0.1072	[0.096-0.119] unit decrease	Affymetrix [at least 7947838] (imputed)	N
683	chr6	12903956	12903957	rs9349379	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	6p24.1	PHACTR1	rs9349379-A	0.5876	3E-77		0.1205	[0.11-0.13] unit decrease	NR [8041861] (imputed)	N
683	chr6	12903956	12903957	rs9349379	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	6p24.1	PHACTR1	rs9349379-A	0.588	3E-77		0.121	[0.11-0.13] unit decrease	Affymetrix [7947838] (imputed)	N
683	chr6	12903956	12903957	rs9349379	28714975	Nelson CP	2017-07-17	Nat Genet	Association analyses based on false discovery rate implicate new loci for coronary artery disease.	Coronary artery disease (myocardial infarction, percutaneous transluminal coronary angioplasty, coronary artery bypass grafting, angina or chromic ischemic heart disease)	18,467 European and unknown ancestry cases, 45,264 European and unknown ancestry controls	57,347 European and unknown ancestry cases, 219,521 European and unknown ancestry controls	6p24.1	PHACTR1	rs9349379-G	0.407	1E-35		1.11	[1.09-1.13]	Affymetrix [9149595] (imputed)	N
683	chr6	12903956	12903957	rs9349379	28714974	Klarin D	2017-07-17	Nat Genet	Genetic analysis in UK Biobank links insulin resistance and transendothelial migration pathways to coronary artery disease.	Coronary artery disease	4,831 European ancestry cases, 115,455 European ancestry controls	up to 60,801 European and unknown ancestry cases, up to 123,504 European and unknown ancestry controls	6p24.1	PHACTR1	rs9349379-G	0.41	3E-11		1.15	[1.11-1.20]	Affymetrix [9061845] (imputed)	N
683	chr6	12903956	12903957	rs9349379	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	6p24.1	PHACTR1	rs9349379-A		4E-6		0.187	unit increase	Affymetrix [at least 2696785] (imputed)	N
683	chr6	12903956	12903957	rs9349379	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	6p24.1	PHACTR1	rs9349379-A		6E-13		0.195	unit increase	Affymetrix [at least 2696785] (imputed)	N
683	chr6	12903956	12903957	rs9349379	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Systolic blood pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	6p24.1	PHACTR1	rs9349379-A	0.5686	6E-10		0.276	mmHg increase	Illumina [242296]	N
683	chr6	12903956	12903957	rs9349379	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Pulse pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	6p24.1	PHACTR1	rs9349379-A	0.5855	5E-8		0.1712	[0.11-0.23] mmHg increase	Illumina [242296]	N
683	chr6	12903956	12903957	rs9349379	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Hypertension	up to 83,330 European ancestry cases, up to 73,760 European ancestry controls, up to 9,322 South Asian ancestry cases, up to 16,861 South Asian ancestry controls	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	6p24.1	PHACTR1	rs9349379-A	0.5966	5E-6		4.583	z score increase	Illumina [242296]	N
683	chr6	12903956	12903957	rs9349379	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Diastolic blood pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	6p24.1	PHACTR1	rs9349379-A	0.5845	6E-6		0.1218	[0.069-0.175] mmHg increase	Illumina [242296]	N
683	chr6	12903956	12903957	rs9349379	27322543	Gormley P	2016-06-20	Nat Genet	Meta-analysis of 375,000 individuals identifies 38 susceptibility loci for migraine.	Migraine without aura	8,348 European ancestry cases, 139,622 European ancestry controls	NA	6p24.1	PHACTR1	rs9349379-A	0.59	2E-9		1.1363636	[1.09-1.18]	Affymetrix, Illumina, Perlegen [8094889] (imputed)	N
683	chr6	12903956	12903957	rs9349379	27322543	Gormley P	2016-06-20	Nat Genet	Meta-analysis of 375,000 individuals identifies 38 susceptibility loci for migraine.	Migraine	59,674 European ancestry cases, 316,078 European ancestry controls	NA	6p24.1	PHACTR1	rs9349379-A	0.59	6E-22		1.0752687	[1.05-1.09]	Affymetrix, Illumina, Perlegen [8094889] (imputed)	N
683	chr6	12903956	12903957	rs9349379	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Migraine	53,109 European ancestry cases, 230,876 European ancestry controls	NA	6p24.1	PHACTR1	rs9349379-?	NR	2E-20		1.0741138	[1.06-1.09]	Illumina [13763073] (imputed)	N
683	chr6	12903956	12903957	rs9349379	26343387	Nikpay M	2015-09-07	Nat Genet	A comprehensive 1,000 Genomes-based genome-wide association meta-analysis of coronary artery disease.	Myocardial infarction	27,509 European ancestry cases, 130 African American cases, 278 Hispanic American cases, 10,257 South Asian ancestry cases, 288 Lebanese ancestry cases, 1,687 East Asian ancestry cases, 99,121 European ancestry controls, 2,778 African American controls, 3,337 Hispanic American controls, 12,899 South Asian ancestry controls, 466 Lebanese ancestry controls, 7,709 East Asian ancestry controls	NA	6p24.1	PHACTR1	rs9349379-G	0.41	9E-35		1.14	[1.12-1.16]	Affymetrix, Illumina [8600000] (imputed)	N
683	chr6	12903956	12903957	rs9349379	26343387	Nikpay M	2015-09-07	Nat Genet	A comprehensive 1,000 Genomes-based genome-wide association meta-analysis of coronary artery disease.	Coronary artery disease	42,096 European ancestry cases, 361 African American cases, 758 Hispanic American cases, 12,658 South Asian ancestry cases, 1,802 Lebanese ancestry cases, 3,614 East Asian ancestry cases, 99,121 European ancestry controls, 2,778 African American controls, 3,337 Hispanic American controls, 12,899 South Asian ancestry controls, 466 Lebanese ancestry controls, 7,709 East Asian ancestry controls	NA	6p24.1	PHACTR1	rs9349379-G	0.431606	2E-42		1.14	[1.12- 1.16]	Affymetrix, Illumina [8600000] (imputed)	N
683	chr6	12903956	12903957	rs9349379	25420145	Debette S	2014-11-24	Nat Genet	Common variation in PHACTR1 is associated with susceptibility to cervical artery dissection.	Cervical artery dissection	1,393 European ancestry cases, 14,416 European ancestry controls	659 European ancestry cases, 2,648 European ancestry controls	6p24.1	PHACTR1	rs9349379-A	0.6	1E-11		1.3	[1.20-1.39]	Illumina [472862]	N
683	chr6	12903956	12903957	rs9349379	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine without aura	7,107 European ancestry cases, 69,427 European ancestry controls	NA	6p24.1	TSC1, TBC1D7, PHACTR1	rs9349379-?	0.6	3E-10		1.16	[1.11-1.22]	Affymetrix, Illumina [~ 2300000] (imputed)	N
683	chr6	12903956	12903957	rs9349379	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine - clinic-based	5,175 European ancestry clinic-based cases, 13,972 European ancestry clinic-based controls	NA	6p24.1	PHACTR1	rs9349379-?	0.6	2E-6		1.12	[1.08-1.18]	Affymetrix, Illumina [~ 2300000] (imputed)	N
683	chr6	12903956	12903957	rs9349379	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NA	6p24.1	TBC1D7, PHACTR1	rs9349379-?	0.6	5E-8		1.08	[1.04-1.1]	Affymetrix, Illumina [~ 2300000] (imputed)	N
683	chr6	12903956	12903957	rs9349379	23394302	Pechlivanis S	2013-02-08	BMC Med Genet	Risk loci for coronary artery calcification replicated at 9p21 and 6q24 in the Heinz Nixdorf Recall Study.	Coronary artery calcification	2,158 Europen ancestry males, 2,171 European ancestry females	NA	6p24.1	PHACTR1	rs9349379-G	0.39	5E-11		0.3	[0.22-0.40] unit increase	Illumina [up to 196725]	N
683	chr6	12903956	12903957	rs9349379	23394302	Pechlivanis S	2013-02-08	BMC Med Genet	Risk loci for coronary artery calcification replicated at 9p21 and 6q24 in the Heinz Nixdorf Recall Study.	Coronary artery calcification	2,158 Europen ancestry males, 2,171 European ancestry females	NA	6p24.1	PHACTR1	rs9349379-G	0.39	4E-8	(females)	0.35	[0.23-0.48] unit increase	Illumina [up to 196725]	N
683	chr6	12903956	12903957	rs9349379	22751097	Lu X	2012-07-01	Nat Genet	Genome-wide association study in Han Chinese identifies four new susceptibility loci for coronary artery disease.	Coronary heart disease	1,515 Han Chinese ancestry cases, 5,019 Han Chinese ancestry controls	15,460 Han Chinese ancestry cases, 11,472 Han Chinese ancestry controls	6p24.1	PHACTR1	rs9349379-G	0.74	2E-9		1.15	[1.10-1.21]	Affymetrix [~ 2200000] (imputed)	N
683	chr6	12903956	12903957	rs9349379	22745674	Hager J	2012-06-20	PLoS One	Genome-wide association study in a Lebanese cohort confirms PHACTR1 as a major determinant of coronary artery stenosis.	Coronary heart disease	1,949 Middle Eastern ancestry individuals	2,547 Middle Eastern ancestry individuals	6p24.1	PHACTR1	rs9349379-G	0.349	8E-10	(CAD)	1.338	[1.22-1.47]	Illumina [513079]	N
683	chr6	12903956	12903957	rs9349379	22745674	Hager J	2012-06-20	PLoS One	Genome-wide association study in a Lebanese cohort confirms PHACTR1 as a major determinant of coronary artery stenosis.	Coronary heart disease	1,949 Middle Eastern ancestry individuals	2,547 Middle Eastern ancestry individuals	6p24.1	PHACTR1	rs9349379-G	0.349	6E-12	(LAD)	1.187	[1.22-1.44]	Illumina [513079]	N
683	chr6	12903956	12903957	rs9349379	22745674	Hager J	2012-06-20	PLoS One	Genome-wide association study in a Lebanese cohort confirms PHACTR1 as a major determinant of coronary artery stenosis.	Coronary heart disease	1,949 Middle Eastern ancestry individuals	2,547 Middle Eastern ancestry individuals	6p24.1	PHACTR1	rs9349379-G	0.349	4E-7	(RCA)	1.23	[1.14-1.33]	Illumina [513079]	N
683	chr6	12903956	12903957	rs9349379	22683712	Freilinger T	2012-06-10	Nat Genet	Genome-wide association analysis identifies susceptibility loci for migraine without aura.	Migraine	2,326 European ancestry cases, 4,580 European ancestry controls	2,508 European ancestry cases, 2,652 European ancestry controls	6p24.1	PHACTR1	rs9349379-?	0.62	3E-8		1.16	[1.10-1.23]	Illumina [1246388] (imputed)	N
683	chr6	12903956	12903957	rs9349379	22144573	O'Donnell CJ	2011-12-05	Circulation	Genome-wide association study for coronary artery calcification with follow-up in myocardial infarction.	Coronary artery calcification	9,961 European ancestry individuals	6,032 European ancestry individuals	6p24.1	PHACTR1	rs9349379-A	NR	4E-22		0.196	[0.16-0.24] % decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
683	chr6	12903956	12903957	rs9349379	21846871	Mehta NN	2011-08-01	Circ Cardiovasc Genet	A genome-wide association study in europeans and South asians identifies 5 new Loci for coronary artery disease.	Coronary heart disease	8,424 European ancestry cases, 6,996 South Asian ancestry cases, 15,062 controls	21,408 cases, 19,185 controls	6p24.1	PHACTR1	rs9349379-?	NR	9E-26				Illumina [~ 57500]	N
683	chr6	12903956	12903957	rs9349379	21378988	Coronary Artery Disease (C4D) Genetics Consortium	2011-03-06	Nat Genet	A genome-wide association study in Europeans and South Asians identifies five new loci for coronary artery disease.	Coronary heart disease	8,424 European ancestry cases, 7,268 European ancestry controls, 6,996 South Asian ancestry cases, 7,794 South Asian ancestry controls	18,049 European ancestry cases, 16,357 European ancestry controls, 3,359 South Asian ancestry cases, 2,828 South Asian ancestry controls	6p24.1	PHACTR1	rs9349379-?	NR	9E-26				Illumina [574919]	N
683	chr6	12907410	12907411	rs2876301	32469254	Matsunaga H	2020-05-29	Circ Genom Precis Med	Transethnic Meta-analysis of Genome-wide Association Studies Identifies Three New Loci and Characterizes Population-specific Differences for Coronary Artery Disease.	Coronary artery disease	15,302 Japanese ancestry cases, 36,140 Japanese ancestry controls	NA	6p24.1	PHACTR1	rs2876301-T	0.81	2E-8		1.15	[1.09-1.21]	Illumina [5932413] (imputed)	N
683	chr6	12909873	12909874	rs7454157	32632093	Guo Y	2020-07-06	Nat Commun	A genome-wide cross-phenotype meta-analysis of the association of blood pressure with migraine.	Migraine without aura and/or systolic blood pressure	757,601 European ancestry individuals with blood pressure measurements, up to 59,674 European ancestry migraine cases, 316,078 European ancestry controls	NA	6p24.1	NR	rs7454157-?	NR	1E-13				NR [up to 7000000]	N
683	chr6	12927543	12927544	rs12526453	33321069	van Zuydam NR	2020-08-13	Circ Genom Precis Med	Genetic Predisposition to Coronary Artery Disease in Type 2 Diabetes Mellitus.	Coronary artery disease in individuals without type 2 diabetes	13,381 European ancestry cases, 4,313 South Asian ancestry cases, 18,926 European ancestry controls, 5,764 South Asian ancestry controls	12,988 European ancestry cases, 93,252 European ancestry controls	6p24.1	NR	rs12526453-C	0.67	4E-7		0.92	[0.89-0.96]	Affymetrix, Illumina [at least 119674] (imputed)	N
683	chr6	12927543	12927544	rs12526453	33321069	van Zuydam NR	2020-08-13	Circ Genom Precis Med	Genetic Predisposition to Coronary Artery Disease in Type 2 Diabetes Mellitus.	Coronary artery disease	19,245 European ancestry cases, 8,463 South Asian ancestry cases, 30,581 European ancestry controls, 8,354 South Asian ancestry controls	16,704 European ancestry cases, 101,083 European ancestry controls	6p24.1	NR	rs12526453-C	0.67	6E-9		1.1	[1.07-1.14]	Affymetrix, Illumina [at least 119674] (imputed)	N
683	chr6	12927543	12927544	rs12526453	21378990	Schunkert H	2011-03-06	Nat Genet	Large-scale association analysis identifies 13 new susceptibility loci for coronary artery disease.	Coronary heart disease	22,233 European ancestry cases, 64,762 European ancestry controls	56,682 European ancestry cases and controls	6p24.1	PHACTR1	rs12526453-C	0.67	1E-9		1.1	[1.06-1.13]	Affymetrix, Illumina [~ 2300000] (imputed)	N
683	chr6	12927543	12927544	rs12526453	19198609	Kathiresan S	2009-02-08	Nat Genet	Genome-wide association of early-onset myocardial infarction with single nucleotide polymorphisms and copy number variants.	Myocardial infarction (early onset)	2,967 European ancestry cases, 3,075 European ancestry controls	9,746 European ancestry cases, 9,746 European ancestry controls	6p24.1	PHACTR1	rs12526453-C	0.65	1E-9		1.12	[1.08-1.17]	Affymetrix [~ 2500000] (imputed)	N
683	chr6	12928849	12928850	rs192183165	29495422	Xu H	2018-02-26	J Pers Med	A Genome-Wide Association Study of Idiopathic Dilated Cardiomyopathy in African Americans.	Idiopathic dilated cardiomyopathy	662 African American cases, 1,138 African American controls	NA	6p24.1	PHACTR1	rs192183165-T	0.301	9E-6		1.44	[1.25-1.66]	Affymetrix [up to 27494467] (imputed)	N
683	chr6	12934301	12934302	rs6458545	32469254	Matsunaga H	2020-05-29	Circ Genom Precis Med	Transethnic Meta-analysis of Genome-wide Association Studies Identifies Three New Loci and Characterizes Population-specific Differences for Coronary Artery Disease.	Coronary artery disease	15,302 Japanese ancestry cases, 36,140 Japanese ancestry controls	NA	6p24.1	PHACTR1	rs6458545-C	0.42	1E-8	(conditional)	1.13	[1.08-1.17]	Illumina [5932413] (imputed)	N
683	chr6	12945092	12945093	rs6905419	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	6p24.1	PHACTR1	rs6905419-T	0.2814	2E-8		0.002	[0.0014-0.0026] unit decrease	Affymetrix [15275733] (imputed)	N
683	chr6	12950750	12950751	rs7774403	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	6p24.1		rs7774403-G	0.596	4E-9		0.007	[0.005-0.009] unit decrease	NR [NR] (imputed)	N
684	chr6	12977850	12977851	rs36100854	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	6p24.1	NR	rs36100854-A	0.238	4E-8		0.00693234	[0.0045-0.0094] unit increase	NR [9732723] (imputed)	N
684	chr6	13022727	13022728	rs9381634	32469254	Matsunaga H	2020-05-29	Circ Genom Precis Med	Transethnic Meta-analysis of Genome-wide Association Studies Identifies Three New Loci and Characterizes Population-specific Differences for Coronary Artery Disease.	Coronary artery disease	15,302 Japanese ancestry cases, 76,014 European and East Asian ancestry cases, 36,140 Japanese ancestry controls, 264,785 European and East Asian ancestry controls	NA	6p24.1	PHACTR1	rs9381634-A	0.3	3E-8		1.05	[1.04-1.06]	Illumina [5167567] (imputed)	N
684	chr6	13064395	13064396	rs9381653	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	6p24.1	PHACTR1	rs9381653-A	0.3003	2E-15		1.0339		Affymetrix [11880941] (imputed)	N
684	chr6	13071072	13071073	rs4615376	25897834	Biernacka JM	2015-04-21	Transl Psychiatry	The International SSRI Pharmacogenomics Consortium (ISPC): a genome-wide association study of antidepressant treatment response.	Response to serotonin reuptake inhibitors in major depressive disorder	298 European ancestry cases, 567 Asian ancestry cases, 1529 European and other ancestry cases	NA	6p24.1	PHACTR1	rs4615376-?	NR	1E-6	(% Change in score)	0.16	[NR] unit decrease	Illumina [~ 7000000] (imputed)	N
685	chr6	13142834	13142835	rs1223527	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels	3,806 African American individuals	NA	6p24.1		rs1223527-?	NR	6E-6		0.15	[0.087-0.213] unit increase	Affymetrix, Illumina [NR] (imputed)	N
685	chr6	13164217	13164218	rs13196010	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	6p24.1	PHACTR1	rs13196010-C	0.317127	2E-9		0.014514345	[0.0098-0.0192] unit increase	Affymetrix [93095623] (imputed)	N
685	chr6	13170633	13170634	rs9357620	26835600	Hu Y	2016-02-02	Nat Commun	GWAS of 89,283 individuals identifies genetic variants associated with self-reporting of being a morning person.	Morning vs. evening chronotype	38,937 European ancestry morning chronotype individuals, 50,346 European ancestry evening chronotype individuals	NA	6p24.1	NR	rs9357620-?	NR	3E-6				Illumina [7427422] (imputed)	N
685	chr6	13170633	13170634	rs9357620	26835600	Hu Y	2016-02-02	Nat Commun	GWAS of 89,283 individuals identifies genetic variants associated with self-reporting of being a morning person.	Chronotype	38,937 European ancestry morning individuals, 50,346 European ancestry evening individuals, at least 32,842 European ancestry neutral individuals	NA	6p24.1	PHACTR1	rs9357620-T	0.7088	2E-8		0.023	[0.015-0.032] unit increase	Illumina [7427422] (imputed)	N
685	chr6	13178258	13178259	rs9463511	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6p24.1	NR	rs9463511-?	NR	2E-12				Affymetrix [~ 8270000] (imputed)	N
685	chr6	13180453	13180454	rs11757278	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	6p24.1		rs11757278-C	NR	1E-9		0.0121	[0.0082-0.016] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
685	chr6	13180453	13180454	rs11757278	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	6p24.1	NA	rs11757278-T	0.6961	7E-13		0.0133	[0.0096-0.017] unit increase	NR [~ 27400000] (imputed)	N
685	chr6	13183522	13183523	rs9395520	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		6p24.1	PHACTR1	rs9395520-C	0.695664	6E-11		0.00975752	[0.0068-0.0127] unit increase	Affymetrix [12370749]	N
685	chr6	13183522	13183523	rs9395520	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	6p24.1		rs9395520-T	0.3042	2E-18		0.02	[0.016-0.024] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
685	chr6	13183522	13183523	rs9395520	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	6p24.1		rs9395520-?	NR	2E-12				NR [~ 8900000] (imputed)	N
685	chr6	13183997	13183998	rs9381812	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	6p24.1	PHACTR1	rs9381812-G	0.29490000000000005	1E-33		1.0497586		Affymetrix [11880941] (imputed)	N
685	chr6	13183997	13183998	rs9381812	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	6p24.1	PHACTR1	rs9381812-G	0.29490000000000005	1E-33		1.0507456		Affymetrix [11880941] (imputed)	N
685	chr6	13188492	13188493	rs10948524	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	6p24.1		rs10948524-G	NR	3E-8		0.0096	[0.0063-0.0129] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
685	chr6	13189940	13189941	rs9367369	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	6p24.1	NA	rs9367369-A	0.7103	2E-12		0.0148	[0.011-0.019] unit increase	NR [~ 27400000] (imputed)	N
685	chr6	13191211	13191212	rs1150602	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	6p24.1	NR	rs1150602-?	NR	6E-6		0.0078994	[0.0045-0.0113] unit increase	Affymetrix [805426] (imputed)	N
685	chr6	13191446	13191447	rs9369915	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	6p24.1		rs9369915-?	NR	9E-15				NR [~ 8900000] (imputed)	N
685	chr6	13194658	13194660	rs200707271	29130521	Christopher L	2017-11-11	Ann Neurol	A variant in PPP4R3A protects against alzheimer-related metabolic decline.	Decline in glucose metabolism in posterior cingulate cortex	335 European ancestry MCI cases, 79 European ancestry AD cases, 192 European ancestry controls	NA	6p24.1	PHACTR1	rs200707271-?	NR	5E-6		2.952	[1.7-4.2] unit increase	Illumina [2820932] (imputed)	N
685	chr6	13216057	13216058	rs4715166	17903296	Kiel DP	2007-09-19	BMC Med Genet	Genome-wide association with bone mass and geometry in the Framingham Heart Study.	Hip geometry	Up to 1,094 individuals from 241 families	NA	6p24.1	PHACTR1	rs4715166-?	NR	3E-6	(NeckW1rf)			Affymetrix [70897]	N
685	chr6	13225970	13225971	rs12195574	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	QT interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	6p24.1	NR	rs12195574-?	NR	4E-6				Affymetrix [5486770] (imputed)	N
686	chr6	13268210	13268211	rs202072	26039976	Wei Z	2015-06-17	Sci Rep	Genome-Wide Association Studies of HIV-1 Host Control in Ethnically Diverse Chinese Populations.	HIV-1 viral setpoint	326 Han Chinese ancestry cases, 58 Dai Chinese ancestry cases, 40 Jingpo Chinese ancestry cases, 83 Uygur Chinese ancestry cases, 11 Hui Chinese ancestry cases, 20 East Asian cases	NA	6p24.1	PHACTR1	rs202072-A	0.4497	4E-6	(Yun)	0.4038	unit decrease	Illumina [up to 528294]	N
686	chr6	13270944	13270945	rs1223397	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	6p24.1	Intergenic	rs1223397-C	0.1968	5E-8	(MTAG)	0.0113	[0.0072-0.0154] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
686	chr6	13270944	13270945	rs1223397	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6p24.1	Intergenic	rs1223397-C	0.1932	2E-8	(MTAG)	0.0093	[0.006-0.0126] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
686	chr6	13270944	13270945	rs1223397	22763476	Zhang D	2012-07-05	Hypertens Res	Genome-wide linkage and association scans for pulse pressure in Chinese twins.	Blood pressure	63 Chinese ancestry dizygotic twin pairs	NA	6p24.1	PHACTR1	rs1223397-?	NR	1E-7				Affymetrix [~ 900000]	N
686	chr6	13318029	13318030	rs3823441	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6p24.1	PHACTR1	rs3823441-?	NR	3E-6	(proline)	0.3171229	[0.18-0.45] unit increase	Affymetrix [at least 2500000] (imputed)	N
686	chr6	13320525	13320526	rs78078192	29563342	Li XS	2018-03-22	JCI Insight	Untargeted metabolomics identifies trimethyllysine, a TMAO-producing nutrient precursor, as a predictor of incident cardiovascular disease risk.	Plasma trimethyllysine levels	1,297 European ancestry individuals	NA	6p24.1	NR	rs78078192-G	0.02	2E-7		0.252	[0.16-0.35] unit increase	Affymetrix [9012028] (imputed)	N
686	chr6	13332466	13332467	rs499818	17903304	Larson MG	2007-09-19	BMC Med Genet	Framingham Heart Study 100K project: genome-wide associations for cardiovascular disease outcomes.	Major CVD	142 cases and 1,203 controls from 310 families	NA	6p24.1	intergenic	rs499818-?	NR	7E-6	(major CVD)			Affymetrix [70897]	N
686	chr6	13338994	13338995	rs2439557	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 142,336 Japanese ancestry controls	NA	6p24.1	TBC1D7-LOC100130357, GFOD1	rs2439557-?	NR	6E-6		0.0578211	[0.033-0.083] unit decrease	Illumina [19707525] (imputed)	N
686	chr6	13353733	13353734	rs9381968	33230199	Okada D	2020-11-23	J Hum Genet	Genome-wide association study of individual differences of human lymphocyte profiles using large-scale cytometry data.	T cell lymphocyte profile difference	298 individuals	NA	6p24.1	NR	rs9381968-?	NR	2E-8			[NR]	NR [1665663]	N
688	chr6	13508442	13508443	rs9382170	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	6p23		rs9382170-T	0.690636	7E-9		0.013740754	[0.0091-0.0184] unit decrease	Affymetrix [93095623] (imputed)	N
688	chr6	13509564	13509565	rs2560787	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	6p23	NR	rs2560787-G	0.689281	6E-12		0.013746	[0.0098-0.0177] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
688	chr6	13510018	13510019	rs78671973	34642315	Ferreiro-Iglesias A	2021-10-12	Nat Commun	Germline determinants of humoral immune response to HPV-16 protect against oropharyngeal cancer.	Human papilloma virus 16 negative oropharyngeal cancer	565 European ancestry cases, 5,256 European ancestry controls	NA	6p23		rs78671973-A	NR	5E-6		2.11		Illumina [7574753] (imputed)	N
688	chr6	13512508	13512509	rs2841532	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	6p23		rs2841532-A	NR	2E-31		0.025	[0.021-0.029] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
688	chr6	13512508	13512509	rs2841532	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	6p23	GFOD1, SIRT5	rs2841532-A	0.69	4E-18		8.67	z-score increase	Affymetrix [4314223] (imputed)	N
688	chr6	13519433	13519434	rs2841528	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	6p23		rs2841528-T	NR	3E-10		0.0148	[0.01-0.019] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
688	chr6	13520730	13520731	rs5874421	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	6p23	RPS4XP7	rs5874421-C	0.699265	7E-13		0.017442562	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
688	chr6	13520730	13520731	rs5874421	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	6p23	RPS4XP7	rs5874421-C	0.699277	9E-17		0.020220365	[0.015-0.025] unit increase	Affymetrix [93095623] (imputed)	N
688	chr6	13530400	13530400	rs57732760	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p23		rs57732760-CA	0.301461	3E-14		0.018385047	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
688	chr6	13530400	13530400	rs57732760	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	6p23		rs57732760-CA	0.30155	5E-11		0.015994914	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
688	chr6	13547957	13547958	rs2841572	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p23	NR	rs2841572-T	0.682158	1E-16				Affymetrix, Illumina [23472807] (imputed)	N
688	chr6	13547957	13547958	rs2841572	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	6p23	NR	rs2841572-T	0.68787	7E-15		0.016186	[0.012-0.02] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
688	chr6	13570285	13570286	rs9382222	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Perceived intensity of sweet substances	1,757 European ancestry twins	NA	6p23	SIRT5	rs9382222-C	0.69	9E-6		0.18	[0.1-0.26] unit increase	Illumina [4381914] (imputed)	N
689	chr6	13713365	13713366	rs418053	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p23	NR	rs418053-C	0.5685	1E-13	(EA)	0.0465	[0.034-0.059] unit decrease	Illumina [~ 11800000] (imputed)	N
689	chr6	13722522	13722523	rs204247	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	6p23		rs204247-A	NR	3E-14		0.96	[0.95-0.97]	Affymetrix, Illumina [NR] (imputed)	N
689	chr6	13722522	13722523	rs204247	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p23	RANBP9	rs204247-G	0.44	8E-13	(EA)	1.04	[1.02-1.06] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
689	chr6	13722522	13722523	rs204247	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	46,785 European ancestry cases, 42,892 European ancestry controls	NA	6p23	NR	rs204247-G	0.44	3E-7		1.05	[1.03-1.07]	Affymetrix, Illumina [~ 14000000] (imputed)	N
689	chr6	13722522	13722523	rs204247	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	15,748 European ancestry cases, 18,084 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls	6p23	NR	rs204247-G	0.44	4E-10		1.05	[1.03-1.07]	Affymetrix, Illumina [~ 11600000] (imputed)	N
689	chr6	13722522	13722523	rs204247	23535729	Michailidou K	2013-04-01	Nat Genet	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	6p23	RANBP9	rs204247-G	0.43	8E-9		1.05	[1.03-1.07]	Affymetrix, Illumina [~ 2600000] (imputed)	N
690	chr6	13775906	13775907	rs6459098	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	6p23	NR	rs6459098-T	NR	4E-8		5.506	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
690	chr6	13780516	13780517	rs9396146	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Yeast infection	52,218 European ancestry cases, 10,235 European ancestry controls	NA	6p23	NR	rs9396146-?	NR	5E-6		0.0332	[0.019-0.048] unit increase	Illumina [at least 560000] (imputed)	N
690	chr6	13794870	13794870	rs11411080	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 7, width of cartilaginous portion of nose)	2,187 European ancestry individuals	NA	6p23	NR	rs11411080-G	0.4761	5E-6		0.1419	[0.081-0.203] unit decrease	Illumina [10677593] (imputed)	N
690	chr6	13843270	13843271	rs9647614	33783297	Zai CC	2021-03-30	World J Biol Psychiatry	Genome-wide association study of suicidal behaviour severity in mood disorders.	Suicidality in mood disorders	719 European ancestry bipolar disorder cases, 2,787 European ancestry major depressive disorder cases	NA	6p23	NR	rs9647614-?	NR	1E-6		4.892	z score increase	Illumina [6737359] (imputed)	N
691	chr6	13906593	13906594	rs34679312	33783297	Zai CC	2021-03-30	World J Biol Psychiatry	Genome-wide association study of suicidal behaviour severity in mood disorders.	Suicide attempt severity in mood disorders	719 European ancestry bipolar disorder cases, 2,787 European ancestry major depressive disorder cases	NA	6p23	NR	rs34679312-?	NR	4E-7		5.05	[NR] z score increase	Illumina [6737359] (imputed)	N
691	chr6	13914868	13914869	rs9475771	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6p23		rs9475771-T	0.358024	9E-13		0.016271312	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
691	chr6	13915050	13915051	rs9382681	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p23	NR	rs9382681-G	0.41073	1E-12				Affymetrix, Illumina [24558453] (imputed)	N
691	chr6	13918460	13918461	rs4142889	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	6p23	NR	rs4142889-A	0.360705	1E-13		0.014203	[0.01-0.018] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
691	chr6	13920537	13920538	rs7760949	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin concentration	172,851 European ancestry individuals	NA	6p23	RNF182	rs7760949-C	0.3592	6E-18		0.03117096	[0.024-0.038] unit increase	Affymetrix [~ 2500000] (imputed)	N
691	chr6	13921015	13921016	rs1330118	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	6p23	NR	rs1330118-T	0.640716	1E-10		0.012605	[0.0088-0.0164] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
691	chr6	13930353	13930354	rs374744684	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p23	NR	rs374744684-T	0.671799	3E-12				Affymetrix, Illumina [22063850] (imputed)	N
691	chr6	13930353	13930354	rs374744684	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p23	NR	rs374744684-T	0.483713	2E-22				Affymetrix, Illumina [21126107] (imputed)	N
691	chr6	13942830	13942831	rs280151	33536081	Hu J	2021-02-03	Hum Genomics	Genetic variants are identified to increase risk of COVID-19 related mortality from UK Biobank data.	Mortality in COVID-19	292 European ancestry cases, 804 European ancestry controls	NA	6p23	NR	rs280151-?	NR	1E-5				NR [18617478] (imputed)	N
691	chr6	13942830	13942831	rs280151	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p23	NR	rs280151-?	NR	8E-7		4.945	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
692	chr6	14091681	14091682	rs72836542	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (immunosuppressants)	3,483 East Asian ancestry cases, 175,243 East Asian ancestry controls	NA	6p23		rs72836542-T	0.148545928	7E-9		0.2027969	[0.13-0.27] unit increase	Illumina [13134967] (imputed)	N
692	chr6	14091681	14091682	rs72836542	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on naive-mature B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p23		rs72836542-T	0.31605	5E-9		0.1572	[0.1-0.21] unit increase	Illumina [18238311] (imputed)	N
692	chr6	14091681	14091682	rs72836542	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on IgD+ CD38dim B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p23		rs72836542-T	0.31605	7E-11		0.1752	[0.12-0.23] unit increase	Illumina [18238311] (imputed)	N
692	chr6	14091681	14091682	rs72836542	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on IgD+ CD38+ B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p23		rs72836542-T	0.31605	2E-8		0.1494	[0.097-0.202] unit increase	Illumina [18238311] (imputed)	N
692	chr6	14091681	14091682	rs72836542	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on IgD+ CD24- B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p23		rs72836542-T	0.31605	1E-9		0.1645	[0.11-0.22] unit increase	Illumina [18238311] (imputed)	N
692	chr6	14091681	14091682	rs72836542	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on IgD+ B cell	3,658 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p23		rs72836542-T	0.3161	2E-8		0.1521	[0.099-0.205] unit increase	Illumina [18238340] (imputed)	N
692	chr6	14096657	14096658	rs12529514	22446963	Okada Y	2012-03-25	Nat Genet	Meta-analysis identifies nine new loci associated with rheumatoid arthritis in the Japanese population.	Rheumatoid arthritis	4,074 Japanese ancestry cases, 16,891 Japanese ancestry controls	5,277 Japanese ancestry cases, 21,684 Japanese ancestry controls	6p23	CD83	rs12529514-C	0.14	2E-8		1.14	[1.09-1.19]	Affymetrix, Illumina [1948139]	N
692	chr6	14097463	14097464	rs7766910	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric bone mineral content (radius)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	6p23	NR	rs7766910-G	0.181	9E-6	(Males)	0.292934	[0.16-0.42] unit increase	Illumina [~ 6600000] (imputed)	N
692	chr6	14103211	14103212	rs74984480	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	6p23	CD83	rs74984480-T	NR	2E-7		0.140761	[0.088-0.193] unit increase	Illumina [8380626] (imputed)	N
692	chr6	14103211	14103212	rs74984480	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	6p23	CD83	rs74984480-T	0.15	7E-6	(East Asian)	0.15294	[0.086-0.22] unit increase	Illumina [8380626] (imputed)	N
692	chr6	14107196	14107197	rs12530098	33310728	Ha E	2020-12-11	Ann Rheum Dis	Large-scale meta-analysis across East Asian and European populations updated genetic architecture and variant-driven biology of rheumatoid arthritis, identifying 11 novel susceptibility loci.	Rheumatoid arthritis	14,361 European ancestry cases, 43,923 European ancestry controls, 8,267 East Asian ancestry cases, 244,741 East Asian ancestry controls	NA	6p23		rs12530098-T	NR	1E-11		1.15	[1.1-1.2]	NR [13810676] (imputed)	N
692	chr6	14108030	14108031	rs71564305	29698419	Pande M	2018-04-26	PLoS One	Genetic susceptibility markers for a breast-colorectal cancer phenotype: Exploratory results from genome-wide association studies.	Breast cancer and/or colorectal cancer	589 European ancestry colorectal cancer with a family history of breast cancer cases, 378 European ancestry breast cancer cases with a family history of colorectal cancer cases, 18 European ancestry breast and colorectal cancer cases, 1,769 European ancestry controls	NA	6p23	CD83	rs71564305-?	0.04	3E-6		2.3255813	[1.59-20]	Illumina [6220060] (imputed)	N
692	chr6	14110614	14110614	rs146022249	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (immunosuppressants)	3,954 European ancestry cases, 268,648 European ancestry controls, 3,483 East Asian ancestry cases, 175,243 East Asian ancestry controls	NA	6p23		rs146022249-GC	NR	1E-8		0.1987	[0.13-0.27] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
692	chr6	14147967	14147968	rs853375	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p23	NR	rs853375-G	0.208	4E-6	(IFNalpha_CXCL10_of_CD4p_T)			Illumina [5084123] (imputed)	N
693	chr6	14161433	14161434	rs62391270	27702941	Cornelis MC	2016-10-03	Hum Mol Genet	Genome-wide association study of caffeine metabolites provides new insights to caffeine metabolism and dietary caffeine-consumption behavior.	Caffeine metabolism (plasma 1,7-dimethylxanthine (paraxanthine) level)	5,353 European ancestry individuals	833 European ancestry individuals	6p23	NR	rs62391270-T	0.82	3E-8		5.54	Z score decrease	Illumina [~ 31000000] (imputed)	N
693	chr6	14170130	14170131	rs853353	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6p23	Intergenic	rs853353-C	0.7572	2E-8	(MTAG)	0.0086	[0.0057-0.0115] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
693	chr6	14173427	14173428	rs853356	21998595	N'Diaye A	2011-10-06	PLoS Genet	Identification, replication, and fine-mapping of Loci associated with adult height in individuals of african ancestry.	Height	20,427 African ancestry individuals	Up to 16,436 African American individuals	6p23	intergenic	rs853356-A	0.29	3E-6		0.04	[0.022-0.058] unit decrease	Affymetrix, Illumina [3310998] (imputed)	N
693	chr6	14200146	14200147	rs7758616	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6p23	CD83	rs7758616-A	0.018	4E-6	(NEFA )	0.03	[NR] mmol/L increase	Illumina [899892]	N
693	chr6	14201973	14201974	rs1888643	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	California verbal learning test score	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	6p23	CD83	rs1888643-A	NR	3E-7		2.1019852	[1.28-2.92] unit decrease	Illumina [> 6200000] (imputed)	N
693	chr6	14231675	14231676	rs6914201	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p23	NR	rs6914201-T	0.125	3E-6	(IFNgamma_STAT4_of_Monocytes)			Illumina [5084123] (imputed)	N
693	chr6	14238510	14238511	rs6940658	33437986	McGurk KA	2021-01-12	Hum Mol Genet	Heritability and family-based GWAS analyses of the N-acyl ethanolamine and ceramide plasma lipidome.	Ceramide levels	999 European ancestry individuals from 196 families	NR	6p23	NR	rs6940658-?	NR	1E-10	(N26S19)	0.48	[0.33-0.63] unit increase	Illumina [5280459] (imputed)	N
694	chr6	14291088	14291089	rs2274822	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6p23	RNF182	rs2274822-?	NR	8E-7	(SM 14:0)	0.18511423	[0.11-0.26] unit increase	Affymetrix [at least 2500000] (imputed)	N
694	chr6	14292819	14292820	rs112817503	33455090	Bing N	2021-01-17	Arthritis Rheumatol	Contribution of a European-Prevalent Variant near CD83 and an East Asian-Prevalent Variant near IL17RB to Herpes Zoster Risk in Tofacitinib Treatment: Results of Genome-Wide Association Study Meta-Analyses.	Response to tofacitinib treatment in psoriasis (herpes zoster)(time to event)	56 European ancestry cases, 1,543 European ancestry controls, 10 East Asian ancestry cases, 80 East Asian ancestry controls, 4 Hispanic cases, 245 Hispanic controls	NA	6p23	CD83	rs112817503-?		1E-10	(EA)	5.47	[3.38-9.77]	Illumina [up to 8000000] (imputed)	N
694	chr6	14292819	14292820	rs112817503	33455090	Bing N	2021-01-17	Arthritis Rheumatol	Contribution of a European-Prevalent Variant near CD83 and an East Asian-Prevalent Variant near IL17RB to Herpes Zoster Risk in Tofacitinib Treatment: Results of Genome-Wide Association Study Meta-Analyses.	Response to tofacitinib treatment in psoriasis (herpes zoster)	56 European ancestry cases, 1,543 European ancestry controls, 10 East Asian ancestry cases, 80 East Asian ancestry controls, 4 Hispanic cases, 245 Hispanic controls	NA	6p23	CD83	rs112817503-?		6E-8	(EA)	7.71	[4.02-14.8]	Illumina [up to 8000000] (imputed)	N
694	chr6	14292819	14292820	rs112817503	33455090	Bing N	2021-01-17	Arthritis Rheumatol	Contribution of a European-Prevalent Variant near CD83 and an East Asian-Prevalent Variant near IL17RB to Herpes Zoster Risk in Tofacitinib Treatment: Results of Genome-Wide Association Study Meta-Analyses.	Response to tofacitinib treatment (herpes zoster)(time to event)	165 European ancestry rheumatoid arthritis cases, 56 East Asian ancestry rheumatoid arthritis cases, 23 Hispanic rheumatoid arthritis cases, 56 European ancestry psoriasis cases, 10 East Asian ancestry psoriasis cases, 4 Hispanic psoriasis cases, 3,566 European ancestry controls, 317 East Asian ancestry controls, 644 Hispanic controls	NA	6p23	CD83	rs112817503-?		2E-10		3.6	[2.43-5.32]	Illumina [up to 8000000] (imputed)	N
694	chr6	14292819	14292820	rs112817503	33455090	Bing N	2021-01-17	Arthritis Rheumatol	Contribution of a European-Prevalent Variant near CD83 and an East Asian-Prevalent Variant near IL17RB to Herpes Zoster Risk in Tofacitinib Treatment: Results of Genome-Wide Association Study Meta-Analyses.	Response to tofacitinib treatment (herpes zoster)	165 European ancestry rheumatoid arthritis cases, 56 East Asian ancestry rheumatoid arthritis cases, 23 Hispanic rheumatoid arthritis cases, 56 European ancestry psoriasis cases, 10 East Asian ancestry psoriasis cases, 4 Hispanic psoriasis cases, 3,566 European ancestry controls, 317 East Asian ancestry controls, 644 Hispanic controls	NA	6p23	CD83	rs112817503-?		2E-8		3.7	[2.35-5.87]	Illumina [up to 8000000] (imputed)	N
694	chr6	14337779	14337780	rs2013140	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental longevity (mother's age at death)	52,776 middle-aged British individuals	NA	6p23	NR	rs2013140-?	NR	4E-6		0.02448	[0.014-0.035] unit decrease	Affymetrix [9658292] (imputed)	N
694	chr6	14411783	14411784	rs139130723	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	6p23	NR	rs139130723-?	NR	1E-6		15.126	NR unit increase	Affymetrix [at least 600000] (imputed)	N
695	chr6	14420381	14420382	rs142803096	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	6p23	NR	rs142803096-?	NR	1E-6		15.126	NR unit increase	Affymetrix [at least 600000] (imputed)	N
695	chr6	14454138	14454139	rs149447933	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	6p23	NR	rs149447933-?	NR	8E-8		17.793	NR unit increase	Affymetrix [at least 600000] (imputed)	N
695	chr6	14454138	14454139	rs149447933	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	6p23	NR	rs149447933-?	NR	6E-8	(AA)	17.746635	[11.42-24.07] unit decrease	Affymetrix [at least 600000] (imputed)	N
695	chr6	14471524	14471525	rs979037	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	28,092 non-Hispanic White ancestry cases, 50,487 non-Hispanic White ancestry controls, 31,852 European ancestry cases, 428,084 European ancestry controls	NA		NR	rs979037-C	NR	1E-8		1.0411		Affymetrix [9869154] (imputed)	N
695	chr6	14504220	14504221	rs1972176	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6p23	NR	rs1972176-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
696	chr6	14573062	14573063	rs9296938	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	6p23	NA	rs9296938-A	0.2501	2E-12		0.0145	[0.011-0.018] unit decrease	NR [~ 27400000] (imputed)	N
696	chr6	14573062	14573063	rs9296938	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	6p23	NR	rs9296938-A	0.2501	2E-12		0.0145	[0.011-0.018] unit decrease	NR [~ 27400000] (imputed)	N
696	chr6	14582443	14582444	rs16875249	21294900	Charles BA	2011-02-04	BMC Med Genomics	A genome-wide association study of serum uric acid in African Americans.	Uric acid levels	1,017 African American individuals	NA	6p23	RP11-330A16.1	rs16875249-A	0.1	8E-6		0.176	[0.1-0.252] unit increase	Affymetrix [2366856] (imputed)	N
696	chr6	14587002	14587003	rs12213875	22116950	Schuh-Huerta SM	2011-11-24	Hum Reprod	Genetic variants and environmental factors associated with hormonal markers of ovarian reserve in Caucasian and African American women.	Ovarian reserve	232 European ancestry female individuals, 200 African American female individuals	NA	6p23	JARID2	rs12213875-?		3E-7	(AMH - EA)			Affymetrix [677261]	N
696	chr6	14595009	14595010	rs9382988	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p23	RP11-330A16.1	rs9382988-C	NR	2E-9		0.0208237	[0.014-0.028] unit decrease	Affymetrix [319769] (imputed)	N
696	chr6	14595009	14595010	rs9382988	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p23	RP11-330A16.1	rs9382988-C	NR	4E-9		0.020709	[0.014-0.028] unit decrease	Affymetrix [321169] (imputed)	N
696	chr6	14595872	14595873	rs6932767	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p23	RP11-330A16.1	rs6932767-G	NR	3E-9		0.0206346	[0.014-0.027] unit decrease	Affymetrix [319769] (imputed)	N
696	chr6	14595872	14595873	rs6932767	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6p23	NR	rs6932767-?	NR	2E-14				Affymetrix [~ 8270000] (imputed)	N
696	chr6	14595872	14595873	rs6932767	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6p23	NR	rs6932767-?	NR	3E-10				Affymetrix [~ 8270000] (imputed)	N
696	chr6	14595872	14595873	rs6932767	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	6p23		rs6932767-?	NR	3E-14				NR [~ 8900000] (imputed)	N
696	chr6	14595872	14595873	rs6932767	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	6p23	NR	rs6932767-T	0.79	1E-14		0.017	[0.012-0.022] unit increase	Affymetrix [2446094] (imputed)	N
696	chr6	14595872	14595873	rs6932767	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	6p23	NR	rs6932767-T	0.79	5E-8				Affymetrix [2446094] (imputed)	N
696	chr6	14595872	14595873	rs6932767	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	6p23	NR	rs6932767-T	0.7926	4E-12		0.0154	[0.011-0.02] unit increase	NR [~ 27400000] (imputed)	N
696	chr6	14596364	14596365	rs6914079	17903297	Seshadri S	2007-09-19	BMC Med Genet	Genetic correlates of brain aging on MRI and cognitive test measures: a genome-wide association and linkage analysis in the Framingham Study.	Cognitive test performance	694 European ancestry individuals	NA	6p23	intergenic	rs6914079-?	NR	2E-6	(F2)			Affymetrix [70897]	N
696	chr6	14597981	14597982	rs9296949	23319000	Luykx JJ	2013-01-15	Mol Psychiatry	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA/MHPG ratio)	up to 398 European ancestry individuals	NA	6p23	intergenic	rs9296949-T		2E-6		0.3021	unit increase	Illumina [5767231] (imputed)	N
696	chr6	14598307	14598308	rs10484339	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p23	NR	rs10484339-?	NR	2E-6		4.76	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
696	chr6	14598819	14598820	rs7770731	21107309	McClay JL	2010-11-24	Neuropsychopharmacology	Genome-wide pharmacogenomic study of neurocognition as an indicator of antipsychotic treatment response in schizophrenia.	Response to antipsychotic treatment in schizophrenia (working memory)	738 European ancestry, African American, and other ancestry cases	NA	6p23	intergenic	rs7770731-?	0.29	1E-6	(quetiapine)			Affymetrix [492900]	N
696	chr6	14619147	14619148	rs72824753	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	6p23	Intergenic	rs72824753-T	0.9022	3E-8	(MTAG)	0.0154	[0.0099-0.0209] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
696	chr6	14619147	14619148	rs72824753	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6p23		rs72824753-T	0.9005	2E-8		0.0133	[0.0086-0.018] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
696	chr6	14636962	14636963	rs707824	23349640	Vijai J	2013-01-17	PLoS Genet	Susceptibility loci associated with specific and shared subtypes of lymphoid malignancies.	Lymphoma	275 Follicular non-Hodgkin's Lymphoma cases, 269 diffuse large B-cell non-Hodgkin's Lymphoma cases, 198 other non-Hodgkin's Lymphoma cases, 202 Hodgkin's Lymphoma cases, 4,044 controls	202 European ancestry Follicular non-Hodgkin's Lymphoma cases, 367 European ancestry diffuse large B-cell non-Hodgkin's Lymphoma cases, 577 European ancestry other non-Hodgkin's Lymphoma cases, 99 European ancestry Hodgkin's Lymphoma cases, 2,596 European ancestry controls	6p23	JARID2, RNF182	rs707824-T	NR	6E-7	(NHL)	1.33	[1.17-1.47]	Affymetrix [530583]	N
696	chr6	14649352	14649353	rs6916345	33560138	Dube MP	2021-02-09	Circ Genom Precis Med	Pharmacogenomics of the Efficacy and Safety of Colchicine in COLCOT.	Gastrointestinal event in colchicine-treated recent myocardial infarction (time to event)	187 European ancestry cases, 580 European ancestry controls	NA	6p23	NR	rs6916345-A	0.5	7E-9		1.89	[1.52-2.35]	Illumina [4468817] (imputed)	N
696	chr6	14656030	14656031	rs857418	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 8, orbital inclination due to vertical and horizontal position of exocanthion)	2,187 European ancestry individuals	NA	6p23	NR	rs857418-C	0.01857	4E-6		0.5076	[0.29-0.72] unit increase	Illumina [34985077] (imputed)	N
697	chr6	14711960	14711961	rs7757476	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	6p23		rs7757476-A	0.2313	9E-9		43.238033	z score increase	NR [6814003]	N
697	chr6	14715029	14715029	rs144366639	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	6p23		rs144366639-ATATT	0.80776	2E-17		0.023985518	[0.018-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
697	chr6	14715881	14715882	rs1267499	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	6p23	intergenic	rs1267499-?	NR	1E-11	(subset analysis)			Illumina [130052]	N
697	chr6	14715881	14715882	rs1267499	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	2,018 European ancestry cases, 6,925 European ancestry controls	6p23	RNU6	rs1267499-A		8E-8		1.15	[1.09-1.20]	Illumina [644674]	N
697	chr6	14716209	14716210	rs1267494	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p23		rs1267494-C	0.814875	2E-9		0.017029973	[0.011-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
697	chr6	14716209	14716210	rs1267494	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p23	NR	rs1267494-C	0.804017	4E-13				Affymetrix, Illumina [23472807] (imputed)	N
697	chr6	14717514	14717515	rs2144683	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	6p23	RNU6-793P	rs2144683-?	NR	7E-13		0.017740319	[0.013-0.023] unit increase	NR [7306098]	N
697	chr6	14718259	14718260	rs9349956	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6p23		rs9349956-A	0.8211	5E-18		0.0159	[0.012-0.019] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
697	chr6	14718259	14718260	rs9349956	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6p23	Intergenic	rs9349956-A	0.8211	2E-17	(MTAG)	0.0146	[0.011-0.018] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
697	chr6	14719242	14719243	rs1314114	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	6p23	RNU6-793P	rs1314114-T	0.1722	2E-11		0.017630458	[0.012-0.023] unit decrease	Affymetrix [up to 18485882] (imputed)	N
697	chr6	14719495	14719496	rs17119	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	6p23	NR	rs17119-A	0.803052	5E-13		0.01724	[0.013-0.022] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
697	chr6	14719495	14719496	rs17119	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Ulcerative colitis	12,366 European and unknown ancestry cases, 33,609 European and unknown ancestry controls	NA	6p23	Intergenic	rs17119-?		7E-7				Illumina [9578670] (imputed)	N
697	chr6	14719495	14719496	rs17119	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	6p23	Intergenic	rs17119-?		9E-11				Illumina [9725440] (imputed)	N
697	chr6	14719495	14719496	rs17119	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	6p23	Intergenic	rs17119-?		2E-7				Illumina [9560910] (imputed)	N
697	chr6	14719495	14719496	rs17119	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	6p23	NR	rs17119-A	0.81	2E-11	(EA)	1.0868671		Affymetrix, Illumina [~ 9000000] (imputed)	N
697	chr6	14719495	14719496	rs17119	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	6p23	NR	rs17119-A	0.81	2E-8	(EA)	1.0885191	[1.06-1.12]	Affymetrix, Illumina [~ 9000000] (imputed)	N
697	chr6	14719495	14719496	rs17119	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	6p23	intergenic	rs17119-A	0.8	1E-10		1.1		Illumina [161311]	N
697	chr6	14719495	14719496	rs17119	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	6p23	intergenic	rs17119-A	0.786	3E-11		1.071	[1.032-1.11]	Affymetrix, Illumina [1230000] (imputed)	N
697	chr6	14721896	14721897	rs9370774	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6p23		rs9370774-T	0.8056	8E-18	(conditional-joint)	0.0153	[0.012-0.019] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
697	chr6	14723607	14723608	rs7776010	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	6p23	NR	rs7776010-T	0.8167	3E-12		0.021022316	NR unit decrease	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
697	chr6	14723607	14723608	rs7776010	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (college completion)	280,007 European ancestry individuals	NA	6p23	NR	rs7776010-?	0.1791	9E-9		1.0476757	[NR]	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
697	chr6	14724488	14724488	rs5874487	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	6p23		rs5874487-TA	0.187678	7E-13		0.02037414	[0.015-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
697	chr6	14729524	14729525	rs12524341	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	6p23		rs12524341-?	NR	5E-12				NR [~ 8900000] (imputed)	N
697	chr6	14752308	14752309	rs9367851	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	6p23	NR	rs9367851-?	NR	2E-10				Illumina [at least 7383741] (imputed)	N
698	chr6	14871550	14871551	rs12208192	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	6p23	Intergenic	rs12208192-C	0.2401	3E-9	(MTAG)	0.016	[0.011-0.021] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
698	chr6	14878059	14878060	rs1811899	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	6p23	CD83, JARID2	rs1811899-C	0.21050000000000002	1E-9		1.0302485		Affymetrix [11880941] (imputed)	N
698	chr6	14886976	14886977	rs10949263	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6p23		rs10949263-A	0.2443	2E-8		0.0091	[0.006-0.0122] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
698	chr6	14895678	14895679	rs6922300	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	6p23	Intergenic	rs6922300-A	0.2474	2E-8	(MTAG)	0.0116	[0.0075-0.0157] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
698	chr6	14895678	14895679	rs6922300	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	6p23	Intergenic	rs6922300-A	0.2475	2E-11	(MTAG)	0.0129	[0.0092-0.0166] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
698	chr6	14895678	14895679	rs6922300	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6p23	Intergenic	rs6922300-A	0.242	5E-11	(MTAG)	0.0101	[0.0072-0.013] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
699	chr6	15024677	15024679	rs559891601	33574277	Kawai Y	2021-02-11	NPJ Genom Med	Mapping of susceptible variants for cold medicine-related Stevens-Johnson syndrome by whole-genome resequencing.	Cold medicine-related Stevens-Johnson syndrome/toxic epidermal necrolysis (SJS/TEN) with severe ocular complications	133 Japanese ancestry cases, 418 Japanese ancestry controls	NA	6p23		rs559891601-C	0.02256	5E-7		0.1523		Illumina [7608150]	N
699	chr6	15025297	15025298	rs4580854	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6p23		rs4580854-?	NR	2E-10				NR [~ 8900000] (imputed)	N
699	chr6	15066120	15066121	rs2747503	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	6p23	JARID2	rs2747503-C	0.662637	3E-8		0.016218	[0.011-0.022] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
700	chr6	15082131	15082132	rs9383018	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	6p23	RP11-146I2.1	rs9383018-C	0.4953	4E-12		0.02456528	[0.018-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
700	chr6	15085912	15085913	rs12215015	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	6p23	RP11-146I2.1	rs12215015-C	0.398692	3E-20		0.020504234	[0.016-0.025] unit increase	Affymetrix [93095623] (imputed)	N
700	chr6	15086616	15086617	rs72832873	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	6p23		rs72832873-A	NR	4E-9		0.0192	[0.013-0.026] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
700	chr6	15089150	15089151	rs6941421	19010793	Baranzini SE	2008-11-14	Hum Mol Genet	Genome-wide association analysis of susceptibility and clinical phenotype in multiple sclerosis.	Multiple sclerosis (severity)	794 European ancestry cases, 883 European ancestry controls	NA	6p23	JARID2	rs6941421-?	0.24	6E-6			[NR]	Illumina [551642]	N
700	chr6	15099584	15099585	rs9370792	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	6p23		rs9370792-A	0.601	1E-21		0.11	[-0.13--0.08] % decrease	Affymetrix [NR] (imputed)	N
700	chr6	15100338	15100339	rs9370793	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	6p23	RP1-190J20.2	rs9370793-A	0.397243	1E-11		0.01547439	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
700	chr6	15101769	15101770	rs2092733	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	6p23	RP1-190J20.2	rs2092733-C	0.397041	6E-25		0.0281829	[0.024-0.032] unit increase	Affymetrix [93095623] (imputed)	N
700	chr6	15137039	15137040	rs2791622	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	6p23		rs2791622-G	0.581382	1E-16		0.018781248	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
700	chr6	15142722	15142723	rs1126348	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6p23		rs1126348-T	0.513934	2E-18		0.020114	[0.016-0.025] unit increase	Affymetrix [93095623] (imputed)	N
700	chr6	15174219	15174220	rs35020077	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	6p23		rs35020077-C	0.146622	1E-9		0.019043362	[0.013-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
700	chr6	15174219	15174220	rs35020077	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	6p23		rs35020077-?	NR	3E-28				NR [~ 8900000] (imputed)	N
700	chr6	15176257	15176258	rs35003605	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	6p23		rs35003605-G	NR	1E-19		0.0339	[0.027-0.041] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
700	chr6	15176257	15176258	rs35003605	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	6p23		rs35003605-G	0.080749	1E-22		0.04005626	[0.032-0.048] unit increase	Affymetrix [93095623] (imputed)	N
700	chr6	15177098	15177099	rs9464759	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6p23		rs9464759-C	0.077364	7E-10		0.026429173	[0.018-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
700	chr6	15177098	15177099	rs9464759	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	6p23		rs9464759-C	0.077403	2E-30		0.0561529	[0.049-0.064] unit decrease	Affymetrix [93095623] (imputed)	N
700	chr6	15177098	15177099	rs9464759	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	6p23		rs9464759-C	0.0774280000000001	3E-38		0.05271946	[0.045-0.061] unit decrease	Affymetrix [93095623] (imputed)	N
700	chr6	15177098	15177099	rs9464759	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	6p23		rs9464759-?	NR	3E-43				NR [~ 8900000] (imputed)	N
700	chr6	15177098	15177099	rs9464759	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	6p23	intergenic	rs9464759-C	0.0773	7E-13		0.04792764	[0.035-0.061] unit increase	Affymetrix [~ 2500000] (imputed)	N
700	chr6	15180505	15180506	rs9464760	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	6p23	intergenic	rs9464760-C	0.0808	6E-17		0.05413085	[0.041-0.067] unit decrease	Affymetrix [~ 2500000] (imputed)	N
700	chr6	15180505	15180506	rs9464760	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	6p23	intergenic	rs9464760-C	0.0809	1E-21		0.06220115	[0.049-0.075] unit decrease	Affymetrix [~ 2500000] (imputed)	N
700	chr6	15181876	15181877	rs13198761	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p23	NR	rs13198761-T	0.0784391	8E-40				Affymetrix, Illumina [24332387] (imputed)	N
700	chr6	15181876	15181877	rs13198761	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	6p23	NR	rs13198761-T	0.080241	7E-42		0.045935	[0.039-0.053] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
700	chr6	15192496	15192497	rs79579487	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p23	NR	rs79579487-A	0.01394	2E-8	(TPM4)	0.1181	NR unit increase	Illumina [1671387] (imputed)	N
700	chr6	15192496	15192497	rs79579487	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p23	NR	rs79579487-A	0.01394	2E-8	(LDHB)	0.1378	NR unit increase	Illumina [1671387] (imputed)	N
700	chr6	15192496	15192497	rs79579487	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p23	NR	rs79579487-A	0.01394	1E-8	(PEA15)	0.007335	NR unit increase	Illumina [1671387] (imputed)	N
700	chr6	15195107	15195108	rs7772093	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	6p23		rs7772093-G	NR	2E-32		0.024	[0.02-0.028] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
700	chr6	15195107	15195108	rs7772093	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	6p23		rs7772093-G	NR	1E-32		0.0241	[0.02-0.028] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
700	chr6	15195685	15195686	rs112702637	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Nucleus accumbens volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	6p23	NR	rs112702637-?		8E-7				Illumina [4322238] (imputed)	N
701	chr6	15229567	15229567	rs554631314	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	6p22.3	NR	rs554631314-AC	0.052025	4E-11		0.03304735	[0.023-0.043] unit decrease	Affymetrix [93095623] (imputed)	N
701	chr6	15229567	15229567	rs554631314	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	6p22.3		rs554631314-AC	0.052022	1E-10		0.03222882	[0.022-0.042] unit decrease	Affymetrix [93095623] (imputed)	N
701	chr6	15230742	15230743	rs112266013	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	6p22.3	NA	rs112266013-A	0.1408	3E-9		0.0167	[0.011-0.022] unit decrease	NR [~ 27400000] (imputed)	N
701	chr6	15234786	15234787	rs112575696	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Sub-cortical grey matter volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	6p22.3	NR	rs112575696-?		9E-6				Illumina [4322238] (imputed)	N
701	chr6	15244017	15244018	rs34229995	27363682	Mitchell JS	2016-07-01	Nat Commun	Genome-wide association study identifies multiple susceptibility loci for multiple myeloma.	Multiple myeloma	7,319 European ancestry cases, 234,385 European ancestry controls	2,547 European ancestry cases, 4,803 European ancestry controls	6p22.3	DTNBP1, JARID2	rs34229995-G	0.029	1E-8		1.37	[NR]	Illumina [at least 7182761] (imputed)	N
701	chr6	15319304	15319305	rs794794	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p22.3	JARID2	rs794794-G	0.350613	1E-11		0.015630376	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
701	chr6	15326801	15326802	rs9396582	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p22.3	NR	rs9396582-G	0.541883	3E-14				Affymetrix, Illumina [23472807] (imputed)	N
701	chr6	15326801	15326802	rs9396582	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	6p22.3	NR	rs9396582-G	0.587329	2E-16		0.015973	[0.012-0.02] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
702	chr6	15376993	15376994	rs2299059	35157032	Ramachandran D	2022-02-14	Hum Mol Genet	Genome-wide association study and functional follow-up identifies 14q12 as a candidate risk locus for cervical cancer.	Cervical cancer	363 German ancestry cases, 861 German ancestry controls	NA	6p22.3	NR	rs2299059-A	0.2543	4E-6		16.593	[16.38-16.81]	Illumina [10000612] (imputed)	N
702	chr6	15389245	15389246	rs9396584	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	6p22.3		rs9396584-C	NR	1E-8		0.0145	[0.0096-0.0194] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
702	chr6	15398330	15398331	rs2299055	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	6p22.3	NR	rs2299055-A	0.117957	1E-8		0.0074681	[0.0049-0.01] unit increase	Affymetrix [16582909] (imputed)	N
702	chr6	15398330	15398331	rs2299055	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	6p22.3	NR	rs2299055-A	0.117375	2E-8		0.0107304	[0.007-0.0145] unit increase	Affymetrix [16585854] (imputed)	N
702	chr6	15398330	15398331	rs2299055	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	6p22.3	NR	rs2299055-A	0.117957	3E-6		0.00673017	[0.0039-0.0096] unit increase	Affymetrix [16582965] (imputed)	N
702	chr6	15399691	15399692	rs11757415	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	6p22.3		rs11757415-G	NR	2E-10		0.0107	[0.0074-0.014] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
702	chr6	15411858	15411859	rs57201697	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6p22.3		rs57201697-?	NR	8E-9				NR [~ 8900000] (imputed)	N
702	chr6	15412064	15412065	rs2237149	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	6p22.3	JARID2	rs2237149-A	0.4131	8E-10		0.002	[0.0014-0.0026] unit increase	Affymetrix [15275733] (imputed)	N
702	chr6	15438567	15438568	rs2299048	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	6p22.3	NR	rs2299048-?	NR	7E-6		0.0078252	[0.0044-0.0112] unit decrease	Affymetrix [805426] (imputed)	N
703	chr6	15475050	15475051	rs727734	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	6p22.3	NR	rs727734-T	0.2525	3E-8		0.0295	[0.019-0.04] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
703	chr6	15475050	15475051	rs727734	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	6p22.3	NR	rs727734-T	0.2363	7E-11		0.0292	[0.02-0.038] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
703	chr6	15497593	15497594	rs58121172	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p22.3	JARID2	rs58121172-C	NR	8E-10		0.0256417	[0.017-0.034] unit decrease	Affymetrix [323123] (imputed)	N
703	chr6	15499418	15499419	rs7769291	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	6p22.3	NR	rs7769291-T	NR	3E-9		0.0166	[0.011-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
703	chr6	15503070	15503071	rs13194650	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	6p22.3	NR	rs13194650-T	NR	3E-9		0.0165	[0.011-0.022] unit increase	Affymetrix [9000000] (imputed)	N
703	chr6	15503695	15503696	rs10949304	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Nevus count or cutaneous melanoma	36,760 European ancestry cutaneous melanoma cases, 375,188 European ancestry controls, 12,930 European ancestry individuals, 52,847 individuals	NA	6p22.3	JARID2	rs10949304-G	0.548737	5E-9				Affymetrix, Illumina [NR] (imputed)	N
703	chr6	15507249	15507250	rs35947355	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	6p22.3	JARID2	rs35947355-A	0.224	6E-15		0.0178	[0.013-0.022] unit decrease	Affymetrix [18391927] (imputed)	N
703	chr6	15525156	15525157	rs16876575	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	6p22.3	NR	rs16876575-T	NR	2E-11		0.0233	[0.016-0.03] unit decrease	Affymetrix [9000000] (imputed)	N
703	chr6	15526416	15526417	rs4712253	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	6p22.3	DTNBP1	rs4712253-C	0.60032	4E-18		0.0020663	[0.0016-0.0025] unit increase	Affymetrix [13995440] (imputed)	N
703	chr6	15535320	15535321	rs9383064	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Squamous cell carcinoma	9,674 European ancestry cases, 625,657 European ancestry controls	NA	6p22.3	DTNBP1	rs9383064-C	0.264767	1E-8		1.1	[1.07-1.13]	Affymetrix, Illumina [up to 9061544] (imputed)	N
703	chr6	15541023	15541024	rs10456200	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	6p22.3	DTNBP1	rs10456200-T	0.96	3E-12		6.97	z-score increase	Affymetrix [4311822] (imputed)	N
703	chr6	15550657	15550658	rs9370823	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6p22.3		rs9370823-?	NR	2E-8				NR [~ 8900000] (imputed)	N
704	chr6	15598879	15598880	rs12199640	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	6p22.3	NR	rs12199640-T	NR	1E-10		0.0378	[0.026-0.049] unit decrease	Affymetrix [9000000] (imputed)	N
704	chr6	15635505	15635506	rs138750655	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		DTNBP1	rs138750655-?	NR	3E-8	(female)	2.77706	[NR] unit decrease	Affymetrix [NR] (imputed)	N
704	chr6	15645538	15645539	rs4712255	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	6p22.3		rs4712255-G	NR	4E-15		0.0208	[0.016-0.026] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
704	chr6	15681707	15681708	rs115822495	30306274	Shah RL	2018-10-10	Hum Genet	Genome-wide association studies for corneal and refractive astigmatism in UK Biobank demonstrate a shared role for myopia susceptibility loci.	Corneal astigmatism	Up to 86,335 European ancestry individuals		6p22.3	DTNBP1	rs115822495-T	NR	3E-6		0.072	[0.043-0.101] dioptres decrease	NR [5901671] (imputed)	N
704	chr6	15681707	15681708	rs115822495	30306274	Shah RL	2018-10-10	Hum Genet	Genome-wide association studies for corneal and refractive astigmatism in UK Biobank demonstrate a shared role for myopia susceptibility loci.	Corneal astigmatism	69,140 European ancestry cases, 17,195 European ancestry controls	NA	6p22.3	DTNBP1	rs115822495-T	NR	4E-6		1.343	[1.219-1.468]	NR [5921785] (imputed)	N
704	chr6	15691777	15691778	rs59112743	28081215	Pardo LM	2017-01-12	PLoS One	Genome-Wide Association Studies of Multiple Keratinocyte Cancers.	Multiple keratinocyte cancers	2,106 European ancestry multiple keratinocyte cancer cases, 2,061 European ancestry single keratinocyte cancer cases, 135 European and unknown ancestry multiple keratinocyte cancer cases, 761 European and unknown ancestry single keratinocyte cancer cases	NA	6p22.3	intergenic	rs59112743-A	NR	3E-6		4.699	NR z-score decrease	Affymetrix, Illumina [up to 9001799] (imputed)	N
704	chr6	15696436	15696437	rs9766154	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.3	NR	rs9766154-?	NR	2E-6		4.762	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
704	chr6	15721352	15721353	rs75002729	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	6p22.3		rs75002729-?	NR	7E-9				NR [~ 8900000] (imputed)	N
705	chr6	15754757	15754758	rs1887604	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	6p22.3	NR	rs1887604-?	NR	6E-7				Affymetrix [NR]	N
705	chr6	15852606	15852607	rs13220668	30172743	Liang X	2018-08-30	Bone	Assessing the genetic correlations between early growth parameters and bone mineral density: A polygenic risk score analysis.	Femoral neck bone mineral density	2,286 European ancestry individuals	NA	6p22.3	ARPC3	rs13220668-?	NR	6E-6				Affymetrix [753382]	N
705	chr6	15858995	15858996	rs6459417	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on unswitched memory B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p22.3		rs6459417-T	0.87367	7E-10		0.2282	[0.16-0.3] unit increase	Illumina [18238311] (imputed)	N
705	chr6	15858995	15858996	rs6459417	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on CD24+ CD27+ B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p22.3		rs6459417-T	0.87367	8E-9		0.2138	[0.14-0.29] unit increase	Illumina [18238311] (imputed)	N
706	chr6	15880539	15880540	rs2066399	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on IgD+ CD38dim B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p22.3		rs2066399-A	0.82269	2E-13		0.2375	[0.17-0.3] unit increase	Illumina [18238311] (imputed)	N
706	chr6	15880539	15880540	rs2066399	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on IgD+ CD38- B cell	3,645 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p22.3		rs2066399-A	0.8227800000000001	6E-9		0.187	[0.12-0.25] unit increase	Illumina [18234152] (imputed)	N
706	chr6	15880539	15880540	rs2066399	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on IgD+ CD38+ B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p22.3		rs2066399-A	0.82269	1E-25		0.3353	[0.27-0.4] unit increase	Illumina [18238311] (imputed)	N
706	chr6	15880539	15880540	rs2066399	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on IgD+ CD24- B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p22.3		rs2066399-A	0.82269	3E-12		0.2255	[0.16-0.29] unit increase	Illumina [18238311] (imputed)	N
706	chr6	15881171	15881172	rs116116894	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	6p22.3	NR	rs116116894-?	NR	6E-6		11.249	NR unit increase	Affymetrix [at least 600000] (imputed)	N
706	chr6	15887118	15887119	rs61228329	34779240	Cheng B	2021-11-01	Bone Joint Res	Gut microbiota is associated with bone mineral density : an observational and genome-wide environmental interaction analysis in the UK Biobank cohort.	Femur total bone mineral density x gut microbiota (genus Lactococcus) interaction	2,293 European ancestry individuals	NA			rs61228329-T	NR	3E-8		0.283	[0.18-0.38] unit decrease	Affymetrix [509886] (imputed)	N
706	chr6	15887288	15887289	rs58586550	34779240	Cheng B	2021-11-01	Bone Joint Res	Gut microbiota is associated with bone mineral density : an observational and genome-wide environmental interaction analysis in the UK Biobank cohort.	Femur total bone mineral density x gut microbiota (genus Lactococcus) interaction	2,293 European ancestry individuals	NA	6p22.3		rs58586550-G	NR	3E-8		0.283	[0.18-0.38] unit decrease	Affymetrix [509886] (imputed)	N
706	chr6	15889330	15889331	rs72825623	34779240	Cheng B	2021-11-01	Bone Joint Res	Gut microbiota is associated with bone mineral density : an observational and genome-wide environmental interaction analysis in the UK Biobank cohort.	Femur total bone mineral density x gut microbiota (genus Lactococcus) interaction	2,293 European ancestry individuals	NA	6p22.3		rs72825623-T	NR	3E-8		0.283	[0.18-0.38] unit decrease	Affymetrix [509886] (imputed)	N
706	chr6	15897002	15897003	rs909846	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on IgD- CD38dim B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p22.3		rs909846-G	0.87536	3E-8		0.2058	[0.13-0.28] unit increase	Illumina [18238311] (imputed)	N
706	chr6	15897006	15897007	rs879299	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on transitional B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p22.3		rs879299-G	0.82077	6E-19		0.287	[0.22-0.35] unit increase	Illumina [18238311] (imputed)	N
706	chr6	15898370	15898371	rs4716010	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on IgD- CD27- B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p22.3		rs4716010-A	0.81951	2E-9		0.1924	[0.13-0.26] unit increase	Illumina [18238311] (imputed)	N
706	chr6	15898883	15898884	rs1569590	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on switched memory B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p22.3		rs1569590-G	0.8745499999999999	3E-8		0.207	[0.13-0.28] unit increase	Illumina [18238311] (imputed)	N
706	chr6	15898883	15898884	rs1569590	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on memory B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p22.3		rs1569590-G	0.8745499999999999	1E-9		0.2257	[0.15-0.3] unit increase	Illumina [18238311] (imputed)	N
706	chr6	15898883	15898884	rs1569590	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on IgD+ CD24+ B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p22.3		rs1569590-G	0.8745499999999999	2E-8		0.2082	[0.14-0.28] unit increase	Illumina [18238311] (imputed)	N
706	chr6	15901206	15901207	rs72825635	34779240	Cheng B	2021-11-01	Bone Joint Res	Gut microbiota is associated with bone mineral density : an observational and genome-wide environmental interaction analysis in the UK Biobank cohort.	Femur total bone mineral density x gut microbiota (genus Lactococcus) interaction	2,293 European ancestry individuals	NA	6p22.3		rs72825635-C	NR	2E-8		0.285	[0.19-0.38] unit decrease	Affymetrix [509886] (imputed)	N
706	chr6	15901210	15901211	rs72825636	34779240	Cheng B	2021-11-01	Bone Joint Res	Gut microbiota is associated with bone mineral density : an observational and genome-wide environmental interaction analysis in the UK Biobank cohort.	Femur total bone mineral density x gut microbiota (genus Lactococcus) interaction	2,293 European ancestry individuals	NA	6p22.3		rs72825636-C	NR	2E-8		0.285	[0.19-0.38] unit decrease	Affymetrix [509886] (imputed)	N
706	chr6	15909524	15909525	rs35514893	30697902	Hernandez-Pacheco N	2019-01-29	Clin Exp Allergy	Genome-wide association study of inhaled corticosteroid response in admixed children with asthma.	Asthma exacerbations in inhaled corticosteroid treatment	854 Hispanic/Latino cases, 493 African American cases	1,697 European ancestry cases	6p22.3	DTNBP1, MYLIP	rs35514893-C	0.98	3E-6	(Hispanic/Latino+AfricanAmerican)	2.78	[1.82-4.35]	Affymetrix [~ 8700000] (imputed)	N
706	chr6	15909524	15909525	rs35514893	30697902	Hernandez-Pacheco N	2019-01-29	Clin Exp Allergy	Genome-wide association study of inhaled corticosteroid response in admixed children with asthma.	Asthma exacerbations in inhaled corticosteroid treatment	854 Hispanic/Latino cases, 493 African American cases	1,697 European ancestry cases	6p22.3	DTNBP1, MYLIP	rs35514893-C	0.918	7E-6	(African American)	3.45	[2.00-5.88]	Affymetrix [~ 8700000] (imputed)	N
706	chr6	15913303	15913304	rs12212931	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on IgD+ B cell	3,658 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p22.3		rs12212931-G	0.81962	2E-12		0.2233	[0.16-0.29] unit increase	Illumina [18238340] (imputed)	N
706	chr6	15913303	15913304	rs12212931	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on B cell	3,660 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p22.3		rs12212931-G	0.81958	3E-11		0.2121	[0.15-0.27] unit increase	Illumina [18238700] (imputed)	N
706	chr6	15914348	15914349	rs6910382	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on naive-mature B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p22.3		rs6910382-G	0.8198	3E-12		0.2234	[0.16-0.29] unit increase	Illumina [18238311] (imputed)	N
706	chr6	15923025	15923026	rs16877320	22205395	Tekola Ayele F	2011-12-29	Immunogenetics	Genome-wide associated loci influencing interleukin (IL)-10, IL-1Ra, and IL-6 levels in African Americans.	Interleukin-10 levels	704 African American individuals	425 West African individuals	6p22.3	ARPC3P5	rs16877320-G	0.15	3E-8	(AA)	0.06	unit decrease	Affymetrix [5396780] (imputed)	N
706	chr6	15936289	15936290	rs4712266	30172743	Liang X	2018-08-30	Bone	Assessing the genetic correlations between early growth parameters and bone mineral density: A polygenic risk score analysis.	Femoral neck bone mineral density	2,286 European ancestry individuals	NA	6p22.3	MYLIP	rs4712266-?	NR	9E-6				Affymetrix [753382]	N
707	chr6	16092359	16092360	rs72831687	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-5 levels	3,364 Finnish ancestry individuals	NA	6p22.3	NR	rs72831687-G		2E-6		0.5239	[0.31-0.74] SD units increase	NR [10700000] (imputed)	N
707	chr6	16108933	16108934	rs2294263	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	6p22.3	intergenic	rs2294263-?	NR	5E-6		0.111	[0.046-0.176] unit increase	Illumina [at least 13000000] (imputed)	N
707	chr6	16109162	16109163	rs2294261	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	LDL cholesterol levels	up to 23,353 African ancestry individuals, 13,171 Asian ancestry individuals, up to 82,522 European ancestry individuals, 6,646 Hispanic individuals	NA	6p22.3		rs2294261-A	0.4921	1E-10	(EA)	1.1645	[0.81-1.52] unit increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
707	chr6	16109162	16109163	rs2294261	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	LDL cholesterol levels	32,285 East Asian ancestry individuals, 173,082 European ancestry individuals	8,478 Chinese ancestry individuals	6p22.3	MYLIP	rs2294261-A	0.487	8E-17	(Trans-ethnic initial)	0.0333	[0.026-0.041] unit increase (EA Beta value)	Affymetrix, Illumina [~ 1900000] (imputed)	N
707	chr6	16110382	16110383	rs9367895	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	6p22.3	LOC644906, MYLIP	rs9367895-G	0.001	1E-6		34.08	[3.52-329.69]	Illumina [1556551]	N
708	chr6	16124559	16124560	rs6459450	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p22.3	NR	rs6459450-T	NR	1E-15		0.035	unit increase	Affymetrix [at least 7091467] (imputed)	N
708	chr6	16124559	16124560	rs6459450	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p22.3	NR	rs6459450-T	0.672	6E-16	(EA)	0.04	unit increase	Affymetrix [at least 7091467] (imputed)	N
708	chr6	16124559	16124560	rs6459450	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p22.3	NR	rs6459450-T	NR	2E-18		0.04	unit increase	Affymetrix [at least 7091467] (imputed)	N
708	chr6	16124559	16124560	rs6459450	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p22.3	NR	rs6459450-T	0.672	4E-18	(EA)	0.044	unit increase	Affymetrix [at least 7091467] (imputed)	N
708	chr6	16126933	16126934	rs7746081	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	6p22.3	MYLIP	rs7746081-G	0.69589	5E-25		0.0234538	[0.019-0.028] unit increase	Affymetrix [NR] (imputed)	N
708	chr6	16126933	16126934	rs7746081	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	6p22.3	MYLIP	rs7746081-G	0.695862	8E-24		0.0227371	[0.018-0.027] unit increase	Affymetrix [NR] (imputed)	N
708	chr6	16126933	16126934	rs7746081	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	6p22.3	RNU6-1114P	rs7746081-?	NR	1E-39		0.0367	[0.032-0.042] unit decrease	Affymetrix [5701386] (imputed)	N
708	chr6	16126933	16126934	rs7746081	30670697	Kilpelainen TO	2019-01-22	Nat Commun	Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity.	LDL cholesterol x physical activity interaction (2df test)	7,260 African American inactive individuals, 12,761 African American active individuals, 2,740 Asian ancestry inactive individuals, 3,615 Asian ancestry active individuals, 22,378 European ancestry inactive individuals, 55,310 European ancestry active individuals, 2,163 Hispanic or Latin American inactive individuals, 3,461 Hispanic or Latin American active individuals	571 African American inactive individuals, 1,521 African American active individuals, 1,217 South African Black ancestry inactive individuals, 389 South African Black ancestry active individuals, 2,495 East Asian ancestry inactive individuals, 1,947 East Asian ancestry active individuals,  724 South Asian ancestry inactive individuals, 1,425 South Asian ancestry active individuals,  33,796 European ancestry inactive individuals, 50,812 European ancestry active individuals, 2,578 Hispanic inactive individuals, 8,661 Hispanic active individuals	6p22.3	NR	rs7746081-A	0.3263	2E-27	(EA)			Affymetrix, Illumina [at least 2500000] (imputed)	N
708	chr6	16126933	16126934	rs7746081	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	6p22.3	intergenic	rs7746081-A	0.4055	6E-9		0.0163	[0.011-0.022] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
708	chr6	16126933	16126934	rs7746081	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	6p22.3	intergenic	rs7746081-A	0.4056	3E-12		0.0195	[0.014-0.025] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
708	chr6	16127406	16127407	rs3757354	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	6p22.3	NR	rs3757354-T	NR	1E-25		0.0307	[0.025-0.036] unit decrease	Affymetrix [9000000] (imputed)	N
708	chr6	16127406	16127407	rs3757354	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	6p22.3	NR	rs3757354-T	NR	2E-29		0.0331	[0.027-0.039] unit decrease	Affymetrix [9000000] (imputed)	N
708	chr6	16127406	16127407	rs3757354	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	6p22.3	NR	rs3757354-T	NR	5E-24		0.0297	[0.024-0.035] unit decrease	Affymetrix [9000000] (imputed)	N
708	chr6	16127406	16127407	rs3757354	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	LDL cholesterol levels	up to 23,353 African ancestry individuals, 13,171 Asian ancestry individuals, up to 82,522 European ancestry individuals, 6,646 Hispanic individuals	NA	6p22.3		rs3757354-T	0.2659	3E-8		1.0021	[0.65-1.36] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
708	chr6	16127406	16127407	rs3757354	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p22.3	NR	rs3757354-C	NR	4E-12		0.034	unit increase	Affymetrix [at least 7091467] (imputed)	N
708	chr6	16127406	16127407	rs3757354	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p22.3	NR	rs3757354-C	0.786	7E-12	(EA)	0.039	unit increase	Affymetrix [at least 7091467] (imputed)	N
708	chr6	16127406	16127407	rs3757354	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p22.3	NR	rs3757354-C	NR	3E-14		0.039	unit increase	Affymetrix [at least 7091467] (imputed)	N
708	chr6	16127406	16127407	rs3757354	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p22.3	NR	rs3757354-C	0.786	2E-14	(EA)	0.044	unit increase	Affymetrix [at least 7091467] (imputed)	N
708	chr6	16127406	16127407	rs3757354	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Total cholesterol levels	32,576 East Asian ancestry individuals, 187,365 European ancestry individuals	10,855 Chinese ancestry individuals	6p22.3	MYLIP	rs3757354-T	0.21	8E-13	(Trans-ethnic initial)	0.0348	[0.027-0.043] unit decrease (EA Beta values)	Affymetrix, Illumina [up to 1900000] (imputed)	N
708	chr6	16127406	16127407	rs3757354	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	LDL cholesterol	up 62,166 European ancestry individuals	NA	6p22.3	MYLIP	rs3757354-C	0.75	2E-9		0.043	[0.029-0.057] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
708	chr6	16127406	16127407	rs3757354	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	6p22.3	MYLIP	rs3757354-T	0.24	2E-17		0.038	[NR] unit decrease	NR [NR] (imputed)	N
708	chr6	16127406	16127407	rs3757354	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	6p22.3	MYLIP	rs3757354-T	0.24	2E-15		0.035	[NR] unit decrease	NR [NR] (imputed)	N
708	chr6	16127406	16127407	rs3757354	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	LDL cholesterol	95,454 European ancestry individuals	NA	6p22.3	IDOL	rs3757354-T	0.22	1E-11		1.43	[1.02-1.84] mg/dL decrease	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
708	chr6	16127406	16127407	rs3757354	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	Cholesterol, total	100,184 European ancestry individuals	NA	6p22.3	IDOL	rs3757354-T	0.22	3E-9		1.46	[0.99-1.93] mg/dL decrease	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
708	chr6	16129071	16129072	rs760632	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	6p22.3		rs760632-G	NR	1E-17		0.0195	[0.015-0.024] unit decrease	Affymetrix, Illumina [20536134] (imputed)	N
708	chr6	16131155	16131156	rs2235215	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	6p22.3	MYLIP	rs2235215-C	NR	8E-25				Affymetrix, Illumina [NR] (imputed)	N
708	chr6	16131155	16131156	rs2235215	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	6p22.3	MYLIP	rs2235215-C	NR	2E-29	(EA)			Affymetrix, Illumina [NR] (imputed)	N
708	chr6	16131155	16131156	rs2235215	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	6p22.3	MYLIP	rs2235215-C	NR	3E-26				Affymetrix, Illumina [NR] (imputed)	N
708	chr6	16131155	16131156	rs2235215	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	6p22.3	MYLIP	rs2235215-C	NR	1E-30	(EA)			Affymetrix, Illumina [NR] (imputed)	N
708	chr6	16131155	16131156	rs2235215	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	6p22.3	MYLIP	rs2235215-C	NR	4E-15	(EA)	1.486	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
708	chr6	16131155	16131156	rs2235215	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	6p22.3	MYLIP	rs2235215-C	NR	1E-13		1.126	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
708	chr6	16131155	16131156	rs2235215	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	6p22.3	MYLIP	rs2235215-C	NR	6E-9		1.073	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
708	chr6	16131155	16131156	rs2235215	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	6p22.3	MYLIP	rs2235215-C	NR	1E-10	(EA)	1.624	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
708	chr6	16131296	16131297	rs2066905	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls, 33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	6p22.3		rs2066905-C	NR	4E-10		0.0345	[0.024-0.045] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
708	chr6	16131296	16131297	rs2066905	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls	NA	6p22.3	MYLIP	rs2066905-C	0.45116	4E-10		0.035224747	[0.024-0.046] unit decrease	Affymetrix [7288503] (imputed)	N
708	chr6	16134246	16134247	rs6920309	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small LDL	115,082 European ancestry individuals	NA	6p22.3		rs6920309-C	0.543151	7E-9		0.0240462	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
708	chr6	16134246	16134247	rs6920309	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol minus HDL-C levels	115,082 European ancestry individuals	NA	6p22.3		rs6920309-C	0.543151	5E-8		0.0225575	[0.014-0.031] unit increase	NR [11722792] (imputed)	N
708	chr6	16134246	16134247	rs6920309	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of apolipoprotein B to apolipoprotein A1 levels	115,082 European ancestry individuals	NA	6p22.3		rs6920309-C	0.543151	2E-10		0.0261818	[0.018-0.034] unit increase	NR [11722792] (imputed)	N
708	chr6	16134246	16134247	rs6920309	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small LDL	115,082 European ancestry individuals	NA	6p22.3		rs6920309-C	0.543151	3E-9		0.0247196	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
708	chr6	16134246	16134247	rs6920309	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in LDL	115,082 European ancestry individuals	NA	6p22.3		rs6920309-C	0.543151	2E-8		0.0231483	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
708	chr6	16134246	16134247	rs6920309	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	6p22.3		rs6920309-C	0.543151	9E-9		0.0238797	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
708	chr6	16134246	16134247	rs6920309	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small LDL	115,082 European ancestry individuals	NA	6p22.3		rs6920309-C	0.543151	3E-9		0.0246942	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
708	chr6	16134246	16134247	rs6920309	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	6p22.3		rs6920309-C	0.543151	2E-8		0.0233501	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
708	chr6	16134246	16134247	rs6920309	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	6p22.3		rs6920309-C	0.543151	3E-8		0.0229574	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
708	chr6	16134246	16134247	rs6920309	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small LDL particles	115,082 European ancestry individuals	NA	6p22.3		rs6920309-C	0.543151	3E-9		0.0245819	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
708	chr6	16134246	16134247	rs6920309	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium LDL particles	115,082 European ancestry individuals	NA	6p22.3		rs6920309-C	0.543151	3E-9		0.0247332	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
708	chr6	16134246	16134247	rs6920309	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large LDL particles	115,082 European ancestry individuals	NA	6p22.3		rs6920309-C	0.543151	1E-8		0.0236991	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
708	chr6	16134246	16134247	rs6920309	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of LDL particles	115,082 European ancestry individuals	NA	6p22.3		rs6920309-C	0.543151	3E-9		0.0247274	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
708	chr6	16134246	16134247	rs6920309	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of IDL particles	115,082 European ancestry individuals	NA	6p22.3		rs6920309-C	0.543151	4E-8		0.0226039	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
708	chr6	16134246	16134247	rs6920309	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Clinical LDL cholesterol levels	115,082 European ancestry individuals	NA	6p22.3		rs6920309-C	0.543151	2E-8		0.023224	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
708	chr6	16134246	16134247	rs6920309	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small LDL	115,082 European ancestry individuals	NA	6p22.3		rs6920309-C	0.543151	3E-8		0.0230837	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
708	chr6	16134246	16134247	rs6920309	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium VLDL	115,082 European ancestry individuals	NA	6p22.3		rs6920309-C	0.543151	6E-10		0.0255583	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
708	chr6	16134246	16134247	rs6920309	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in VLDL	115,082 European ancestry individuals	NA	6p22.3		rs6920309-C	0.543151	5E-8		0.0226902	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
708	chr6	16134246	16134247	rs6920309	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	6p22.3		rs6920309-C	0.543151	3E-8		0.0231112	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
708	chr6	16134246	16134247	rs6920309	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small LDL	115,082 European ancestry individuals	NA	6p22.3		rs6920309-C	0.543151	6E-9		0.0242697	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
708	chr6	16134246	16134247	rs6920309	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	6p22.3		rs6920309-C	0.543151	1E-9		0.0252272	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
708	chr6	16134246	16134247	rs6920309	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	6p22.3		rs6920309-C	0.543151	4E-8		0.0228584	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
708	chr6	16134246	16134247	rs6920309	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein B levels	115,082 European ancestry individuals	NA	6p22.3		rs6920309-C	0.543151	4E-9		0.0243583	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
708	chr6	16134246	16134247	rs6920309	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	6p22.3		rs6920309-T	NR	4E-20		0.0215	[0.017-0.026] unit decrease	Affymetrix, Illumina [20521447] (imputed)	N
708	chr6	16153928	16153929	rs74449336	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	6p22.3		rs74449336-?	NR	1E-13				NR [~ 8900000] (imputed)	N
708	chr6	16161424	16161425	rs6924995	22331829	Chasman DI	2012-02-13	Circ Cardiovasc Genet	Genetic determinants of statin-induced low-density lipoprotein cholesterol reduction: the Justification for the Use of Statins in Prevention: an Intervention Trial Evaluating Rosuvastatin (JUPITER) trial.	Response to statins (LDL cholesterol change)	6,989 European ancestry individuals	NA	6p22.3	MYLIP, GMPR, IDOL	rs6924995-?	NR	5E-7	(absolute LDL-C reduction)	4.1	[2.73-5.47] mg/dL increase	Illumina [814418]	N
708	chr6	16167516	16167517	rs149514089	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	6p22.3	MRPL42P2, RP1-13D10.3	rs149514089-T	0.0023	2E-11		0.2549386	[0.18-0.33] unit increase	Affymetrix [~ 2500000] (imputed)	N
708	chr6	16167516	16167517	rs149514089	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	6p22.3	MRPL42P2, RP1-13D10.3	rs149514089-T	0.0023	2E-13		0.2799235	[0.21-0.35] unit increase	Affymetrix [~ 2500000] (imputed)	N
708	chr6	16190385	16190386	rs9396646	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	6p22.3	NR	rs9396646-A	NR	6E-11		0.0209	[0.015-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
708	chr6	16190385	16190386	rs9396646	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	6p22.3	NR	rs9396646-A	NR	3E-11		0.0213	[0.015-0.028] unit decrease	Affymetrix [9000000] (imputed)	N
708	chr6	16197193	16197194	rs2142672	20864672	Waterworth DM	2010-09-23	Arterioscler Thromb Vasc Biol	Genetic variants influencing circulating lipid levels and risk of coronary artery disease.	LDL cholesterol	up to 17,723 European ancestry individuals	up to 37,774 European ancestry individuals, up to 9,665 Indian Asian ancestry individuals	6p22.3	MYLIP, GMPR	rs2142672-C	0.74	2E-8		0.01	[0.007-0.015] unit increase	Affymetrix, Illumina, Perlegen [2155369] (imputed)	N
708	chr6	16248022	16248024	rs10600676	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	6p22.3	GMPR	rs10600676-C	0.259629	2E-9		0.015266039	[0.01-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
708	chr6	16252058	16252059	rs7752579	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin concentration	108,728 Japanese ancestry individuals	NA	6p22.3	GMPR	rs7752579-?	NR	3E-8		0.05141	[0.033-0.07] unit decrease novel	Illumina [6108953] (imputed)	N
709	chr6	16256042	16256043	rs10484358	23377640	GENDEP Investigators	2013-02-01	Am J Psychiatry	Common genetic variation and antidepressant efficacy in major depressive disorder: a meta-analysis of three genome-wide pharmacogenetic studies.	Major depressive disorder	Up to 2,256 European ancestry cases	NA	6p22.3	MYLIP, GMPR, ATXN1	rs10484358-T	0.0827112	1E-6	(% improvement - SSRI treated - 2 weeks)	0.4258	[0.25-0.6] unit decrease	Affymetrix, Illumina [1200000] (imputed)	N
709	chr6	16261275	16261276	rs35303804	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	6p22.3		rs35303804-?	NR	2E-16				NR [~ 8900000] (imputed)	N
709	chr6	16264317	16264318	rs149649230	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	6p22.3	NR	rs149649230-?	NR	6E-6		11.25	NR unit increase	Affymetrix [at least 600000] (imputed)	N
709	chr6	16267474	16267475	rs9383146	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	6p22.3	GMPR	rs9383146-T	0.356514	2E-13		0.016844727	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
709	chr6	16267474	16267475	rs9383146	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	6p22.3	NR	rs9383146-T	0.357068	8E-18		0.017373	[0.013-0.021] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
709	chr6	16269362	16269363	rs9477074	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular volume	108,256 Japanese ancestry individuals	NA	6p22.3	GMPR	rs9477074-?	NR	5E-12		0.06553	[0.047-0.084] unit decrease novel	Illumina [6108953] (imputed)	N
709	chr6	16269362	16269363	rs9477074	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin	108,054 Japanese ancestry individuals	NA	6p22.3	GMPR	rs9477074-?	NR	4E-18		0.08229	[0.064-0.101] unit decrease novel	Illumina [6108953] (imputed)	N
709	chr6	16269362	16269363	rs9477074	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6p22.3	ATXN1	rs9477074-?	NR	3E-14	(xanthosine)	0.25487623	[0.19-0.32] unit increase	Affymetrix [at least 2500000] (imputed)	N
709	chr6	16281186	16281187	rs6914805	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6p22.3	GMPR	rs6914805-T	0.2644	2E-9		0.014888192	[0.01-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
709	chr6	16281186	16281187	rs6914805	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	6p22.3	GMPR	rs6914805-T	0.264364	4E-70		0.0534943	[0.049-0.058] unit decrease	Affymetrix [93095623] (imputed)	N
709	chr6	16281186	16281187	rs6914805	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	6p22.3	GMPR	rs6914805-T	0.264352	1E-18		0.03218456	[0.025-0.039] unit decrease	Affymetrix [93095623] (imputed)	N
709	chr6	16281186	16281187	rs6914805	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	6p22.3		rs6914805-?	NR	2E-17				NR [~ 8900000] (imputed)	N
709	chr6	16282518	16282519	rs11298204	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	6p22.3	GMPR	rs11298204-A	0.264979	3E-39		0.033072203	[0.028-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
709	chr6	16282518	16282519	rs11298204	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6p22.3	GMPR	rs11298204-A	0.264975	3E-29		0.0283329	[0.023-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
709	chr6	16282518	16282519	rs11298204	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	6p22.3	GMPR	rs11298204-A	0.26487	2E-15		0.019587079	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
709	chr6	16282518	16282519	rs11298204	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	6p22.3	GMPR	rs11298204-A	0.264913	2E-35		0.031135617	[0.026-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
709	chr6	16282518	16282519	rs11298204	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6p22.3	GMPR	rs11298204-A	0.264921	1E-28		0.027832786	[0.023-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
709	chr6	16286060	16286061	rs146771786	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Reticulocyte count	437,291 European ancestry individuals	NA	6p22.3		rs146771786-?	NR	9E-33		0.317328	[0.27-0.37] unit increase	NR [9800000] (imputed)	N
709	chr6	16286060	16286061	rs146771786	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Red cell distribution width	441,263 European ancestry individuals	NA	6p22.3		rs146771786-?	NR	5E-15		0.19439	[0.14-0.25] unit decrease	NR [9800000] (imputed)	N
709	chr6	16286060	16286061	rs146771786	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean corpuscular volume	444,035 European ancestry individuals	NA	6p22.3		rs146771786-?	NR	7E-43		0.326065	[0.28-0.37] unit increase	NR [9800000] (imputed)	N
709	chr6	16286060	16286061	rs146771786	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean corpuscular hemoglobin concentration	443,081 European ancestry individuals	NA	6p22.3		rs146771786-?	NR	6E-54		0.368067	[0.32-0.42] unit increase	NR [9800000] (imputed)	N
709	chr6	16286060	16286061	rs146771786	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	High light scatter reticulocyte count	437,723 European ancestry individuals	NA	6p22.3		rs146771786-?	NR	3E-31		0.312267	[0.26-0.36] unit increase	NR [9800000] (imputed)	N
709	chr6	16286060	16286061	rs146771786	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	6p22.3	GMPR	rs146771786-A	0.00155499999999997	1E-40		0.3766518	[0.32-0.43] unit increase	Affymetrix [93095623] (imputed)	N
709	chr6	16286060	16286061	rs146771786	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6p22.3	GMPR	rs146771786-A	0.00155499999999997	1E-33		0.3408263	[0.29-0.4] unit increase	Affymetrix [93095623] (imputed)	N
709	chr6	16286060	16286061	rs146771786	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	6p22.3	GMPR	rs146771786-A	0.00156100000000003	1E-14		0.21392277	[0.16-0.27] unit decrease	Affymetrix [93095623] (imputed)	N
709	chr6	16286060	16286061	rs146771786	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	6p22.3	GMPR	rs146771786-A	0.00155700000000003	4E-36		0.345758	[0.3-0.4] unit increase	Affymetrix [93095623] (imputed)	N
709	chr6	16286060	16286061	rs146771786	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	6p22.3	GMPR	rs146771786-A	0.00155400000000006	1E-19		0.230936	[0.18-0.29] unit increase	Affymetrix [93095623] (imputed)	N
709	chr6	16286060	16286061	rs146771786	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	6p22.3	GMPR	rs146771786-A	0.001552	4E-53		0.41529825	[0.36-0.47] unit increase	Affymetrix [93095623] (imputed)	N
709	chr6	16286060	16286061	rs146771786	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	6p22.3	GMPR	rs146771786-A	0.00155499999999997	1E-10		0.18259348	[0.13-0.24] unit increase	Affymetrix [93095623] (imputed)	N
709	chr6	16286060	16286061	rs146771786	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	6p22.3	GMPR	rs146771786-A	0.00155700000000003	1E-35		0.349688	[0.29-0.4] unit increase	Affymetrix [93095623] (imputed)	N
709	chr6	16286060	16286061	rs146771786	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6p22.3	GMPR	rs146771786-A	0.00155700000000003	2E-31		0.32733905	[0.27-0.38] unit increase	Affymetrix [93095623] (imputed)	N
709	chr6	16286060	16286061	rs146771786	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	6p22.3	GMPR	rs146771786-A	0.0014	1E-10		0.344219	[0.24-0.45] unit increase	Affymetrix [~ 2500000] (imputed)	N
709	chr6	16286060	16286061	rs146771786	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	6p22.3	GMPR	rs146771786-A	0.0014	4E-9		0.3131889	[0.21-0.42] unit increase	Affymetrix [~ 2500000] (imputed)	N
709	chr6	16286060	16286061	rs146771786	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	6p22.3	GMPR	rs146771786-A	0.0014	2E-12		0.3700334	[0.27-0.47] unit increase	Affymetrix [~ 2500000] (imputed)	N
709	chr6	16288191	16288192	rs6459467	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p22.3	GMPR	rs6459467-A		8E-21		0.021	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
709	chr6	16288191	16288192	rs6459467	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin concentration	172,851 European ancestry individuals	NA	6p22.3	GMPR	rs6459467-A	0.3801	4E-27		0.03847969	[0.031-0.045] unit decrease	Affymetrix [~ 2500000] (imputed)	N
709	chr6	16288191	16288192	rs6459467	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	6p22.3	GMPR	rs6459467-A	0.3799	2E-59		0.05917168	[0.052-0.066] unit decrease	Affymetrix [~ 2500000] (imputed)	N
709	chr6	16288191	16288192	rs6459467	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	6p22.3	GMPR	rs6459467-A	0.38	3E-10		0.02300312	[0.016-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
709	chr6	16288191	16288192	rs6459467	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	6p22.3	GMPR	rs6459467-A	0.39	2E-16	(hypoxanthine)	0.02	[0.014-0.026] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
709	chr6	16288614	16288615	rs2327958	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p22.3	NR	rs2327958-A	0.598505	2E-18				Affymetrix, Illumina [22063850] (imputed)	N
709	chr6	16288614	16288615	rs2327958	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	6p22.3	NR	rs2327958-G	0.386028	6E-142		0.046848	[0.043-0.05] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
709	chr6	16288614	16288615	rs2327958	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p22.3	NR	rs2327958-G	0.496053	2E-27				Affymetrix, Illumina [24653286] (imputed)	N
709	chr6	16289908	16289908	rs71535075	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	6p22.3	GMPR	rs71535075-GTC	0.383738	1E-20		0.021007836	[0.017-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
709	chr6	16289911	16289911	rs397758183	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	6p22.3		rs397758183-GTC	NR	5E-41		0.0301	[0.026-0.034] unit decrease	Affymetrix, Illumina [20536605] (imputed)	N
709	chr6	16289911	16289911	rs397758183	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	6p22.3		rs397758183-GTC	NR	9E-20		0.0165	[0.013-0.02] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
709	chr6	16290760	16290761	rs1042391	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	135,482 East Asian ancestry individuals	NA	6p22.3		rs1042391-A	0.879746	2E-13		0.0414471	[0.03-0.053] unit decrease	Illumina [13477028] (imputed)	N
709	chr6	16290760	16290761	rs1042391	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	6p22.3		rs1042391-T	0.619	1E-65		0.19	[0.17-0.21] % increase	Affymetrix [NR] (imputed)	N
709	chr6	16290760	16290761	rs1042391	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	6p22.3	GMPR	rs1042391-A	0.383092	3E-56		0.0358194	[0.031-0.04] unit decrease	Affymetrix [93095623] (imputed)	N
709	chr6	16290760	16290761	rs1042391	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p22.3	NR	rs1042391-A	0.492298	4E-76				Affymetrix, Illumina [21126107] (imputed)	N
709	chr6	16290760	16290761	rs1042391	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	6p22.3	NR	rs1042391-A	0.384932	2E-70		0.036479	[0.032-0.041] SD unit decrease	Affymetrix, Illumina [50282193] (imputed)	N
709	chr6	16290760	16290761	rs1042391	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	6p22.3	NR	rs1042391-A	0.386903	2E-28		0.020908	[0.017-0.025] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
709	chr6	16290848	16290848	rs147049568	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Reticulocyte count	437,291 European ancestry individuals	NA	6p22.3		rs147049568-?	NR	8E-35		0.284311	[0.24-0.33] unit increase	NR [9800000] (imputed)	N
709	chr6	16290848	16290848	rs147049568	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Red cell distribution width	441,263 European ancestry individuals	NA	6p22.3		rs147049568-?	NR	6E-24		0.231037	[0.19-0.28] unit decrease	NR [9800000] (imputed)	N
709	chr6	16290848	16290848	rs147049568	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Red blood cell count	445,305 European ancestry individuals	NA	6p22.3		rs147049568-?	NR	2E-12		0.160974	[0.12-0.21] unit decrease	NR [9800000] (imputed)	N
709	chr6	16290848	16290848	rs147049568	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean corpuscular volume	444,035 European ancestry individuals	NA	6p22.3		rs147049568-?	NR	3E-55		0.318128	[0.28-0.36] unit increase	NR [9800000] (imputed)	N
709	chr6	16290848	16290848	rs147049568	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean corpuscular hemoglobin concentration	443,081 European ancestry individuals	NA	6p22.3		rs147049568-?	NR	8E-80		0.395292	[0.35-0.44] unit increase	NR [9800000] (imputed)	N
709	chr6	16290848	16290848	rs147049568	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Immature fraction of reticulocytes	438,154 European ancestry individuals	NA	6p22.3		rs147049568-?	NR	5E-13		0.164024	[0.12-0.21] unit increase	NR [9800000] (imputed)	N
709	chr6	16290848	16290848	rs147049568	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	High light scatter reticulocyte count	437,723 European ancestry individuals	NA	6p22.3		rs147049568-?	NR	6E-37		0.285313	[0.24-0.33] unit increase	NR [9800000] (imputed)	N
709	chr6	16290848	16290848	rs147049568	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Hemoglobin levels	445,373 European ancestry individuals	NA	6p22.3		rs147049568-?	NR	2E-9		0.127384	[0.081-0.173] unit increase	NR [9800000] (imputed)	N
709	chr6	16290848	16290848	rs147049568	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	6p22.3	GMPR	rs147049568-TAC	0.00206099999999998	4E-34		0.3453226	[0.29-0.4] unit increase	Affymetrix [93095623] (imputed)	N
709	chr6	16290848	16290848	rs147049568	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6p22.3	GMPR	rs147049568-TAC	0.00206200000000001	1E-27		0.3092151	[0.25-0.36] unit increase	Affymetrix [93095623] (imputed)	N
709	chr6	16290848	16290848	rs147049568	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	6p22.3	GMPR	rs147049568-TAC	0.00206700000000004	4E-13		0.20296459	[0.15-0.26] unit decrease	Affymetrix [93095623] (imputed)	N
709	chr6	16290848	16290848	rs147049568	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	6p22.3	GMPR	rs147049568-TAC	0.00206399999999995	5E-39		0.364517	[0.31-0.42] unit increase	Affymetrix [93095623] (imputed)	N
709	chr6	16290848	16290848	rs147049568	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	6p22.3	GMPR	rs147049568-TAC	0.00206399999999995	7E-13		0.224911	[0.17-0.28] unit increase	Affymetrix [93095623] (imputed)	N
709	chr6	16290848	16290848	rs147049568	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	6p22.3	GMPR	rs147049568-TAC	0.00206499999999998	3E-49		0.3984786	[0.35-0.45] unit increase	Affymetrix [93095623] (imputed)	N
709	chr6	16290848	16290848	rs147049568	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	6p22.3	GMPR	rs147049568-TAC	0.00205599999999995	5E-32		0.33246335	[0.28-0.39] unit increase	Affymetrix [93095623] (imputed)	N
709	chr6	16290848	16290848	rs147049568	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6p22.3	GMPR	rs147049568-TAC	0.00205599999999995	2E-27		0.30567223	[0.25-0.36] unit increase	Affymetrix [93095623] (imputed)	N
709	chr6	16290861	16290862	rs6926552	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	6p22.3	GMPR	rs6926552-C	0.205654	4E-17		0.0393236	[0.034-0.044] unit decrease	Affymetrix [93095623] (imputed)	N
709	chr6	16294721	16294722	rs7765828	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	6p22.3		rs7765828-G	NR	6E-17		0.0162	[0.012-0.02] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
709	chr6	16294721	16294722	rs7765828	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	6p22.3		rs7765828-G	NR	1E-90		0.0453	[0.041-0.05] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
709	chr6	16294721	16294722	rs7765828	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	6p22.3		rs7765828-G	NR	3E-139		0.0564	[0.052-0.061] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
709	chr6	16294721	16294722	rs7765828	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	6p22.3	GMPR	rs7765828-G	0.383923	4E-26		0.035276715	[0.029-0.042] unit decrease	Affymetrix [93095623] (imputed)	N
709	chr6	16294721	16294722	rs7765828	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p22.3	NR	rs7765828-G	0.49949	6E-23				Affymetrix, Illumina [24332387] (imputed)	N
709	chr6	16294721	16294722	rs7765828	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	6p22.3	NR	rs7765828-G	0.386784	5E-22		0.018365	[0.015-0.022] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
709	chr6	16294721	16294722	rs7765828	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p22.3	NR	rs7765828-G	0.483751	4E-152				Affymetrix, Illumina [24246363] (imputed)	N
709	chr6	16294721	16294722	rs7765828	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p22.3	NR	rs7765828-G	0.489835	9E-204				Affymetrix, Illumina [20825802] (imputed)	N
709	chr6	16294721	16294722	rs7765828	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	6p22.3	NR	rs7765828-G	0.385203	1E-186		0.057561	[0.054-0.061] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
709	chr6	16294721	16294722	rs7765828	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	6p22.3		rs7765828-?	NR	2E-160				NR [~ 8900000] (imputed)	N
709	chr6	16294721	16294722	rs7765828	24952745	Arking DE	2014-06-22	Nat Genet	Genetic association study of QT interval highlights role for calcium signaling pathways in myocardial repolarization.	QT interval	Up to 70,389 European ancestry individuals, up to 672 Orcadian individuals	Up to 33,316 European ancestry individuals	6p22.3	GMPR	rs7765828-G	0.402	3E-10		0.55	[0.37-0.73] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
709	chr6	16295347	16295347	rs142002554	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	153,512 East Asian ancestry individuals	NA	6p22.3		rs142002554-AACTC	0.007564	2E-9		0.114035	[0.077-0.151] unit decrease	Illumina [13479135] (imputed)	N
709	chr6	16295347	16295347	rs142002554	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	6p22.3		rs142002554-AACTC	0.007593	2E-32		0.256346	[0.21-0.3] unit increase	Illumina [13476266] (imputed)	N
709	chr6	16295347	16295347	rs142002554	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	6p22.3		rs142002554-AACTC	0.00763	1E-42		0.298243	[0.26-0.34] unit increase	Illumina [13476299] (imputed)	N
709	chr6	16296823	16296824	rs180020	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.3	GMPR	rs180020-A	NR	8E-9		5.773	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
709	chr6	16298970	16298971	rs147840525	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	121,047 East Asian ancestry individuals	NA	6p22.3	NR	rs147840525-T	0.993123	1E-23		0.273948	[0.22-0.33] SD units decrease	Affymetrix, Illumina [16286195] (imputed)	N
709	chr6	16298970	16298971	rs147840525	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	119,629 East Asian ancestry individuals	NA	6p22.3	NR	rs147840525-T	0.993122	2E-30		0.314493	[0.26-0.37] SD units decrease	Affymetrix, Illumina [16286228] (imputed)	N
709	chr6	16306750	16306751	rs16885	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	6p22.3		rs16885-A	0.1977	3E-8		0.09826198	[0.06-0.137] mmHg increase	Affymetrix, Illumina [242866] (imputed)	N
709	chr6	16310029	16310030	rs180009	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	6p22.3	Intergenic	rs180009-T	0.1951	1E-8	(MTAG)	0.0166	[0.011-0.022] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
709	chr6	16314030	16314031	rs180002	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Verbal-numerical reasoning	171,304 British ancestry individuals	NA	6p22.3		rs180002-?	NR	2E-8				NR [7857346] (imputed)	N
709	chr6	16315657	16315658	rs180001	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	6p22.3	Intergenic	rs180001-A	0.5954	2E-8	(MTAG)	0.0103	[0.0068-0.0138] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
709	chr6	16315657	16315658	rs180001	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	6p22.3	Intergenic	rs180001-A	0.5956	3E-8	(MTAG)	0.0093	[0.006-0.0126] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
709	chr6	16320986	16320987	rs179994	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.3	ATXN1	rs179994-A	NR	8E-10		6.15	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
709	chr6	16321791	16321792	rs179993	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	6p22.3		rs179993-A	0.3971	3E-11		0.14521831	[0.1-0.19] mmHg increase	Affymetrix, Illumina [242865] (imputed)	N
709	chr6	16322977	16322978	rs557966248	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	6p22.3	ATXN1	rs557966248-T	0.00117900000000004	1E-9		0.22426008	[0.15-0.3] unit increase	Affymetrix [93095623] (imputed)	N
709	chr6	16322977	16322978	rs557966248	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	6p22.3	ATXN1	rs557966248-T	0.0016	7E-14		0.3921268	[0.29-0.49] unit increase	Affymetrix [~ 2500000] (imputed)	N
709	chr6	16322977	16322978	rs557966248	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	6p22.3	ATXN1	rs557966248-T	0.0016	4E-12		0.3646302	[0.26-0.47] unit increase	Affymetrix [~ 2500000] (imputed)	N
709	chr6	16322977	16322978	rs557966248	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	6p22.3	ATXN1	rs557966248-T	0.0016	3E-12		0.3656213	[0.26-0.47] unit increase	Affymetrix [~ 2500000] (imputed)	N
709	chr6	16322977	16322978	rs557966248	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	6p22.3	ATXN1	rs557966248-T	0.0016	2E-11		0.3503079	[0.25-0.45] unit increase	Affymetrix [~ 2500000] (imputed)	N
709	chr6	16324321	16324322	rs179992	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	6p22.3		rs179992-?	NR	1E-8				NR [~ 8900000] (imputed)	N
709	chr6	16343055	16343056	rs9383153	22780124	Lind PA	2012-07-11	Addict Biol	Genome-wide association study of a quantitative disordered gambling trait.	Gambling	1,312 European ancestry twins from 894 families	NA	6p22.3	ATXN1, GMPR	rs9383153-A	0.948	5E-6		0.331	[0.19-0.47] unit increase	Illumina [2373249] (imputed)	N
709	chr6	16371544	16371544	rs59728940	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip	15 Asian ancestry cases, 13 European ancestry cases, 15 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	6p22.3	NR	rs59728940-?	NR	4E-6		4.63	[3.38-6.36]	Illumina [539000] (imputed)	N
710	chr6	16399556	16399557	rs3819405	33037222	Sieh W	2020-10-09	Nat Commun	Identification of 31 loci for mammographic density phenotypes and their associations with breast cancer risk.	Percent mammographic density	24,192 European ancestry individuals	NA	6p22.3		rs3819405-?	NR	5E-15		0.059	[0.043-0.075] unit decrease	Affymetrix [9906178] (imputed)	N
710	chr6	16399556	16399557	rs3819405	33037222	Sieh W	2020-10-09	Nat Commun	Identification of 31 loci for mammographic density phenotypes and their associations with breast cancer risk.	Mammographic density (dense area)	24,192 European ancestry individuals	NA	6p22.3		rs3819405-?	NR	4E-14		0.069	[0.051-0.087] unit decrease	Affymetrix [9906178] (imputed)	N
710	chr6	16399556	16399557	rs3819405	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	6p22.3		rs3819405-T	NR	6E-7		0.97	[0.96-0.98]	Affymetrix, Illumina [NR] (imputed)	N
710	chr6	16399556	16399557	rs3819405	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p22.3	ATXN1	rs3819405-C	0.669999999999999	2E-8	(EA)	1.0416667	[1.03-1.06] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
710	chr6	16413624	16413625	rs7770062	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atrial fibrillation/atrial flutter	29,212 European ancestry cases, 400,539 European ancestry controls, 4,150 East Asian ancestry cases, 155,540 East Asian ancestry controls	NA	6p22.3		rs7770062-A	NR	8E-18		0.1293	[0.1-0.159] unit decrease	Affymetrix, Illumina [25830072] (imputed)	N
710	chr6	16413624	16413625	rs7770062	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	6p22.3	ATXN1	rs7770062-G	0.86	9E-21	(EA)	1.11	[1.09-1.14]	Affymetrix, Illumina [up to 12149979] (imputed)	N
710	chr6	16415750	16415751	rs73366713	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	6p22.3	ATXN1	rs73366713-G	0.86	2E-25		1.11	[1.09-1.13]	Illumina [34740186] (imputed)	N
710	chr6	16415750	16415751	rs73366713	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	6p22.3	ATXN1	rs73366713-G	0.86	6E-21		1.11	[1.09-1.14]	Affymetrix, Illumina [up to 12149979] (imputed)	N
710	chr6	16430020	16430021	rs2237199	27918534	Chu AY	2016-12-05	Nat Genet	Multiethnic genome-wide meta-analysis of ectopic fat depots identifies loci associated with adipocyte development and differentiation.	Visceral adipose tissue attenuation (Hounslow unit scale)	5,749 European ancestry men, 449 African American men	NA	6p22.3	ATXN1	rs2237199-?	NR	8E-6				Affymetrix, Illumina [~ 2600000] (imputed)	N
710	chr6	16430020	16430021	rs2237199	27918534	Chu AY	2016-12-05	Nat Genet	Multiethnic genome-wide meta-analysis of ectopic fat depots identifies loci associated with adipocyte development and differentiation.	Subcutaneous adipose tissue attenuation (Hounsfield unit scale)	5,699 European ancestry men, 449 African American men	NA	6p22.3	ATXN1	rs2237199-A	0.11	1E-8		5.67	z-score increase	Affymetrix, Illumina [~ 2600000] (imputed)	N
710	chr6	16430020	16430021	rs2237199	27918534	Chu AY	2016-12-05	Nat Genet	Multiethnic genome-wide meta-analysis of ectopic fat depots identifies loci associated with adipocyte development and differentiation.	Subcutaneous adipose tissue attenuation (Hounsfield unit scale)	5,699 European ancestry men, 449 African American men	NA	6p22.3	ATXN1	rs2237199-A	0.11	1E-7	(EA)	5.3	z-score increase	Affymetrix, Illumina [~ 2600000] (imputed)	N
710	chr6	16494982	16494983	rs185768063	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Growth-regulated protein alpha levels	3,505 Finnish ancestry individuals	NA	6p22.3	NR	rs185768063-G		1E-7		0.3998	[0.25-0.55] SD units decrease	NR [10700000] (imputed)	N
711	chr6	16521328	16521329	rs236940	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs236940-T	0.383977	6E-9		0.0558724	[0.038-0.074] increase	Affymetrix [11014269] (imputed)	N
711	chr6	16522606	16522607	rs6459472	32528159	Choquet H	2020-06-11	Commun Biol	A multiethnic genome-wide analysis of 44,039 individuals identifies 41 new loci associated with central corneal thickness.	Central corneal thickness	32,292 European ancestry individuals, 9,623 East Asian ancestry individuals, 1,367 Hispanic/Latino individuals, 757 African American  individuals	NA	6p22.3	ATXN1	rs6459472-?	NA	3E-9		1.45	[0.98-1.92] unit increase	Affymetrix [5541230] (imputed)	N
711	chr6	16526292	16526293	rs2744415	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	6p22.3	NR	rs2744415-T	NR	9E-6		0.0974	[0.054-0.14] unit decrease	Illumina [11133794] (imputed)	N
711	chr6	16613222	16613223	rs34656657	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	6p22.3	ATXN1	rs34656657-A	0.0215267671894124	2E-8	(G_unclassified_P_Firmicutes_HB)	1.22465	[0.8-1.65] unit decrease	Illumina [7711310] (imputed)	N
711	chr6	16630897	16630898	rs17603856	27399966	Morris DL	2016-07-11	Nat Genet	Genome-wide association meta-analysis in Chinese and European individuals identifies ten new loci associated with systemic lupus erythematosus.	Systemic lupus erythematosus	1,659 Chinese ancestry cases, 3,398 Chinese ancestry controls, 4,036 European ancestry cases, 6,959 European ancestry controls	3,043 Chinese ancestry cases, 5,074 Chinese ancestry controls, 2,643 European ancestry cases, 9,032 European ancestry controls	6p22.3	ATXN1	rs17603856-T	0.645	3E-8	(EA)	1.1235955	[1.08-1.18]	NR [6344733] (imputed)	N
711	chr6	16630897	16630898	rs17603856	27399966	Morris DL	2016-07-11	Nat Genet	Genome-wide association meta-analysis in Chinese and European individuals identifies ten new loci associated with systemic lupus erythematosus.	Systemic lupus erythematosus	1,659 Chinese ancestry cases, 3,398 Chinese ancestry controls, 4,036 European ancestry cases, 6,959 European ancestry controls	3,043 Chinese ancestry cases, 5,074 Chinese ancestry controls, 2,643 European ancestry cases, 9,032 European ancestry controls	6p22.3	ATXN1	rs17603856-T	0.645	3E-12		1.1363636	[1.1-1.18]	NR [6344733] (imputed)	N
711	chr6	16636460	16636461	rs909788	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6p22.3		rs909788-T	0.4322	4E-8	(conditional-joint)	0.0078	[0.0051-0.0105] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
711	chr6	16636460	16636461	rs909788	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	6p22.3	ATXN1	rs909788-?	NR	1E-7		1.1	[1.06-1.15]	Illumina [at least 5000000] (imputed)	N
711	chr6	16639119	16639120	rs729770	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Ruminococcus belonging to family Lachnospiraceae)	1,068 Japanese ancestry individuals	NA	6p22.3	ATXN1	rs729770-A	0.06	8E-6	(female)	0.384	[0.22-0.55] unit increase	Illumina [6380737] (imputed)	N
712	chr6	16659130	16659131	rs760882	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	6p22.3		rs760882-?	NR	9E-8				NR [~ 8900000] (imputed)	N
712	chr6	16661757	16661758	rs9370918	29860282	Scelsi MA	2018-05-30	Brain	Genetic study of multimodal imaging Alzheimer's disease progression score implicates novel loci.	Cortical amyloid beta load	936 European ancestry individuals	NA	6p22.3	ATXN1	rs9370918-?		1E-6	(corrected for APOE4 status)	0.13	[NR] unit decrease	Illumina [5137218] (imputed)	N
712	chr6	16662927	16662928	rs7772172	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6p22.3		rs7772172-A	0.4009	2E-10		0.0091	[0.0064-0.0118] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
712	chr6	16662927	16662928	rs7772172	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	6p22.3	NR	rs7772172-A	0.4014	1E-8		0.013005014	NR unit increase	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
712	chr6	16663100	16663101	rs9297016	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6p22.3	Intergenic	rs9297016-A	0.4011	1E-9	(MTAG)	0.0081	[0.0056-0.0106] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
712	chr6	16663462	16663463	rs6459480	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	6p22.3	ATXN1	rs6459480-A	0.4469	5E-10		0.012655446	[0.0087-0.0166] unit decrease	Affymetrix [up to 18485882] (imputed)	N
712	chr6	16663462	16663463	rs6459480	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	6p22.3	ATXN1	rs6459480-?	NR	2E-10		0.012876417	[0.0089-0.0169] unit decrease	NR [7306098]	N
712	chr6	16668265	16668266	rs6902174	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Hepatocyte growth factor levels	8,292 Finnish ancestry individuals	NA	6p22.3	NR	rs6902174-G		8E-6		0.0693	[0.039-0.1] SD units decrease	NR [10700000] (imputed)	N
712	chr6	16672759	16672760	rs719316	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	6p22.3	ATXN1	rs719316-T	NR	2E-13		1.0723	NR	Affymetrix, Illumina [8278136] (imputed)	N
712	chr6	16681077	16681078	rs3793102	32152699	Nudel R	2020-03-09	Hum Genet	A large population-based investigation into the genetics of susceptibility to gastrointestinal infections and the link between gastrointestinal infections and mental illness.	Gastrointestinal infection	7,197 Danish ancestry cases, 37,062 Danish ancestry controls	NA	6p22.3	NR	rs3793102-A	NR	6E-6		1.0899183	[1.05-1.13]	Illumina [11600722] (imputed)	N
712	chr6	16700059	16700060	rs73725220	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Ejection fraction in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	6p22.3	NR	rs73725220-?	NR	3E-6				Affymetrix [5486770] (imputed)	N
712	chr6	16700832	16700833	rs3812207	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	6p22.3		rs3812207-A	NR	6E-10		0.0134	[0.0091-0.0177] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
712	chr6	16700832	16700833	rs3812207	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	6p22.3	NR	rs3812207-A	NR	5E-9		0.0151	[0.01-0.02] unit decrease	Affymetrix [9000000] (imputed)	N
712	chr6	16711059	16711060	rs6906830	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p22.3	ATXN1	rs6906830-A	NR	6E-9		0.0171203	[0.011-0.023] unit increase	Affymetrix [321114] (imputed)	N
712	chr6	16711059	16711060	rs6906830	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	6p22.3	ATXN1	rs6906830-A	0.380095	2E-9		0.013699953	[0.0092-0.0182] unit decrease	Affymetrix [93095623] (imputed)	N
712	chr6	16712202	16712202	rs564376664	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	6p22.3		rs564376664-TACTGACTGAA	NR	1E-17		0.019	[0.015-0.023] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
712	chr6	16716846	16716847	rs1150627	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	6p22.3	ATXN1	rs1150627-A	0.491469	3E-16		0.018107777	[0.014-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
712	chr6	16717215	16717216	rs1150628	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p22.3	NR	rs1150628-G	0.536434	3E-19				Affymetrix, Illumina [23467995] (imputed)	N
712	chr6	16727459	16727460	rs1008251	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	6p22.3	NR	rs1008251-C	0.509775	3E-19		0.016745	[0.013-0.02] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
712	chr6	16728693	16728694	rs1001211	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6p22.3	NR	rs1001211-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
712	chr6	16731451	16731452	rs76654064	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p22.3	NR	rs76654064-A	0.124	5E-6	(IFNgamma_STAT1_of_CD20p)			Illumina [5084123] (imputed)	N
712	chr6	16741236	16741237	rs16878937	30172743	Liang X	2018-08-30	Bone	Assessing the genetic correlations between early growth parameters and bone mineral density: A polygenic risk score analysis.	Total body bone mineral density	2,286 European ancestry individuals	NA	6p22.3	ATXN1	rs16878937-?	NR	5E-6				Affymetrix [753382]	N
712	chr6	16742032	16742033	rs697739	19451621	Landers JE	2009-05-18	Proc Natl Acad Sci U S A	Reduced expression of the Kinesin-Associated Protein 3 (KIFAP3) gene increases survival in sporadic amyotrophic lateral sclerosis.	Amyotrophic lateral sclerosis	1,821 cases, 2,258 controls	538 cases, 556 controls	6p22.3	ATXN1	rs697739-A	NR	4E-6	(age of onset)	2.04	[1.18-2.90] years decrease	Illumina [288357]	N
712	chr6	16744686	16744687	rs1144700	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	6p22.3		rs1144700-T	NR	7E-23		0.0228	[0.018-0.027] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
712	chr6	16744686	16744687	rs1144700	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	6p22.3		rs1144700-T	NR	4E-27		0.0281	[0.023-0.033] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
712	chr6	16744686	16744687	rs1144700	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p22.3	ATXN1	rs1144700-T	0.178495	1E-26		0.03087868	[0.025-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
712	chr6	16744686	16744687	rs1144700	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	6p22.3	ATXN1	rs1144700-T	0.178472	3E-12		0.020199569	[0.015-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
712	chr6	16744686	16744687	rs1144700	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	6p22.3	ATXN1	rs1144700-T	0.17851	3E-29		0.03255295	[0.027-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
712	chr6	16744686	16744687	rs1144700	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	6p22.3	ATXN1	rs1144700-T	0.178473	6E-13		0.02090962	[0.015-0.027] unit increase	Affymetrix [93095623] (imputed)	N
712	chr6	16744686	16744687	rs1144700	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	6p22.3		rs1144700-?	NR	4E-21				NR [~ 8900000] (imputed)	N
712	chr6	16744686	16744687	rs1144700	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	6p22.3	ATXN1	rs1144700-T	0.1789	4E-11		0.0312677	[0.022-0.041] unit decrease	Affymetrix [~ 2500000] (imputed)	N
712	chr6	16744686	16744687	rs1144700	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	6p22.3	ATXN1	rs1144700-T	0.1789	6E-13		0.03405242	[0.025-0.043] unit decrease	Affymetrix [~ 2500000] (imputed)	N
712	chr6	16744686	16744687	rs1144700	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	6p22.3	ATXN1	rs1144700-T	0.1789	3E-13		0.034444	[0.025-0.044] unit decrease	Affymetrix [~ 2500000] (imputed)	N
712	chr6	16744686	16744687	rs1144700	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	6p22.3	ATXN1	rs1144700-T	0.179	2E-13		0.0346259	[0.025-0.044] unit decrease	Affymetrix [~ 2500000] (imputed)	N
712	chr6	16744686	16744687	rs1144700	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	6p22.3	ATXN1	rs1144700-T	0.1789	4E-13		0.03434341	[0.025-0.044] unit decrease	Affymetrix [~ 2500000] (imputed)	N
712	chr6	16744686	16744687	rs1144700	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	6p22.3	ATXN1	rs1144700-T	0.1789	8E-13		0.03386698	[0.025-0.043] unit decrease	Affymetrix [~ 2500000] (imputed)	N
712	chr6	16745238	16745239	rs16879003	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (90 or 130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	6p22.3	ATXN1	rs16879003-?	NR	1E-7		0.194	[0.11-0.28] unit decrease	Illumina [at least 13000000] (imputed)	N
712	chr6	16750010	16750011	rs562760	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Neutrophil count	62,076 Japanese ancestry individuals	NA	6p22.3	ATXN1	rs562760-?	NR	6E-9		0.03502	[0.023-0.047] unit decrease novel	Illumina [6108953] (imputed)	N
712	chr6	16752863	16752864	rs9367926	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	6p22.3		rs9367926-?	NR	6E-12				NR [~ 8900000] (imputed)	N
712	chr6	16753377	16753378	rs56374431	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fish- and plant-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	6p22.3	ATXN1	rs56374431-?	NR	4E-8		0.017906	[0.012-0.024] unit increase	Affymetrix [25921788] (imputed)	N
712	chr6	16755767	16755768	rs6924861	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	6p22.3		rs6924861-T	NR	2E-10		0.0193	[0.013-0.025] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
712	chr6	16758001	16758002	rs6915310	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	78,744 East Asian ancestry individuals	NA	6p22.3	NR	rs6915310-C	0.38392	1E-9		0.032554	[0.022-0.043] SD units increase	Affymetrix, Illumina [16289093] (imputed)	N
712	chr6	16758001	16758002	rs6915310	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p22.3	NR	rs6915310-T	0.233005	7E-42				Affymetrix, Illumina [23114412] (imputed)	N
712	chr6	16758001	16758002	rs6915310	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	6p22.3	NR	rs6915310-T	0.173979	2E-36		0.032312	[0.027-0.037] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
712	chr6	16758001	16758002	rs6915310	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	6p22.3	NR	rs6915310-T	0.169738	5E-20		0.0375681	[0.03-0.046] unit increase	NR [19129689] (imputed)	N
712	chr6	16758424	16758425	rs1322599	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	154,355 East Asian ancestry individuals	NA	6p22.3		rs1322599-T	0.619882	9E-9		0.020466	[0.013-0.027] unit decrease	Illumina [13479091] (imputed)	N
712	chr6	16758424	16758425	rs1322599	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	82,810 East Asian ancestry individuals	NA	6p22.3		rs1322599-T	0.625092	4E-10		0.0304075	[0.021-0.04] unit decrease	Illumina [13467171] (imputed)	N
712	chr6	16758424	16758425	rs1322599	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	6p22.3	NR	rs1322599-T	NR	3E-9		0.0189	[0.013-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
712	chr6	16758424	16758425	rs1322599	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p22.3	NR	rs1322599-T	0.266935	1E-40				Affymetrix, Illumina [24649327] (imputed)	N
712	chr6	16758424	16758425	rs1322599	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	6p22.3	NR	rs1322599-T	0.174313	1E-35		0.030663	[0.026-0.035] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
712	chr6	16758424	16758425	rs1322599	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	White blood cell count	107,964 Japanese ancestry individuals	NA	6p22.3	ATXN1	rs1322599-?	NR	2E-9		0.02756	[0.019-0.037] unit decrease novel	Illumina [6108953] (imputed)	N
712	chr6	16763433	16763434	rs76154441	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	6p22.3		rs76154441-T	0.95522	1E-6		32.72807	z score increase	NR [6814003]	N
713	chr6	16825136	16825137	rs1240820	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	6p22.3	ATXN1	rs1240820-G	0.706837	4E-10		0.0131815	[0.0091-0.0173] unit decrease	Affymetrix [NR] (imputed)	N
714	chr6	16940460	16940461	rs13204763	31504550	Bradfield JP	2019-07-05	Hum Mol Genet	A Trans-ancestral Meta-Analysis of Genome-Wide Association Studies Reveals Loci Associated with Childhood Obesity.	Childhood obesity	8,613 European ancestry cases, 3,213 African American cases, 69 Moroccan ancestry cases, 986 Hispanic/Latino cases, 124 East Asian ancestry cases, 12,696 European ancestry controls, 1,392 African American controls, 64 Moroccan ancestry controls, 993 Hispanic/Latino controls, 454 East Asian ancestry controls	NA	6p22.3	NR	rs13204763-A	NR	9E-6	(EA)	0.0906	[0.051-0.131] unit decrease	Affymetrix, Illumina [up to 15123508] (imputed)	N
714	chr6	16950630	16950631	rs6939294	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	6p22.3	NR	rs6939294-T	0.2341	3E-9		0.015577532	NR unit increase	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
714	chr6	16951625	16951626	rs76903139	31296530	Trendowski MR	2019-07-11	Clin Cancer Res	Clinical and Genome-Wide Analysis of Serum Platinum Levels after Cisplatin-Based Chemotherapy.	Serum platinum levels after completion of cisplatin chemotherapy	866 European ancestry individuals, 17 non-European ancestry individuals, 127 individuals	NR	6p22.3	NR	rs76903139-G	0.043	9E-6		0.3411	[0.19-0.49] unit increase	Illumina [7305641] (imputed)	N
714	chr6	16952898	16952899	rs72829841	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	6p22.3	STMND1	rs72829841-T	NR	3E-9		0.021630812	[0.015-0.029] unit decrease	Affymetrix [NR]	N
714	chr6	16954367	16954368	rs7766240	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6p22.3		rs7766240-T	0.0964	2E-8		0.0134	[0.0087-0.0181] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
714	chr6	16954603	16954604	rs13213143	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6p22.3	RBM24	rs13213143-?	NR	3E-6	(PC 38:4)	0.7275934	[0.42-1.03] unit increase	Affymetrix [at least 2500000] (imputed)	N
714	chr6	16966051	16966052	rs72829857	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	6p22.3		rs72829857-?	NR	1E-10				NR [~ 8900000] (imputed)	N
714	chr6	16966051	16966052	rs72829857	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6p22.3		rs72829857-A	0.761	2E-19		0.0149	[0.012-0.018] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
714	chr6	16966051	16966052	rs72829857	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6p22.3	Intergenic	rs72829857-A	0.761	1E-20	(MTAG)	0.0143	[0.011-0.017] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
714	chr6	16966051	16966052	rs72829857	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.3	NR	rs72829857-?	NR	1E-6		4.877	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
714	chr6	16970969	16970970	rs7382170	31407831	Din L	2019-08-13	Genet Epidemiol	Genetic overlap between autoimmune diseases and non-Hodgkin lymphoma subtypes.	Marginal zone lymphoma or systemic lupus erythematosus	741 European ancestry marginal zone lymphoma cases, 7,219 European ancestry systemic lupus erythematosus cases, 21,982 European ancestry controls	NA	6p22.3	Intergenic	rs7382170-?	NR	6E-8		1.1456066		Illumina [~ 600000] (imputed)	N
714	chr6	16971574	16971575	rs68082256	30531953	International League Against Epilepsy Consortium on Complex Epilepsies	2018-12-10	Nat Commun	Genome-wide mega-analysis identifies 16 loci and highlights diverse biological mechanisms in the common epilepsies.	Generalized epilepsy	3,708 European ancestry cases, 61 African American cases, 24,218 European ancestry controls, 2,584 African American controls	NA	6p22.3	ATXN1	rs68082256-A	0.2	2E-9		6.02	NR unit decrease	Affymetrix, Illumina [~ 5000000] (imputed)	N
714	chr6	16972974	16972975	rs10807603	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	6p22.3	STMND1	rs10807603-A	NR	5E-9		0.017541053	[0.012-0.023] unit increase	Affymetrix [NR]	N
714	chr6	17013011	17013012	rs66664020	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure	35,269 European ancestry cases, 63,451 European ancestry controls	NA	6p22.3	NR	rs66664020-A	0.764423	8E-8		1.0775862	[1.05-1.11]	Affymetrix [7791636] (imputed)	N
714	chr6	17028672	17028673	rs4980365	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	6p22.3		rs4980365-?	NR	7E-12		0.0212	unit decrease	NR [NR]	N
714	chr6	17032055	17032056	rs12529540	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (90 or 130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	6p22.3	intergenic	rs12529540-?	NR	7E-6		0.218	[0.11-0.33] unit decrease	Illumina [at least 13000000] (imputed)	N
715	chr6	17046570	17046571	rs1407287	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6p22.3	ATXN1	rs1407287-?	NR	1E-6	(TAG 48:0)	0.24489447	[0.15-0.34] unit increase	Affymetrix [at least 2500000] (imputed)	N
715	chr6	17120239	17120240	rs12203596	30552108	Kawabata Y	2018-12-14	Diabetes	A genome-Wide Association Study Confirming a Strong Effect of HLA and Identifying Variants in CSAD/lnc-ITGB7-1 on Chromosome 12q13.13 Associated with Susceptibility to Fulminant Type 1 Diabetes.	Fulminant type 1 diabetes	257 Japanese ancestry cases, 419 Japanese ancestry controls	NA	6p22.3	FLJ23152	rs12203596-C	NR	6E-6		2.84	[1.78-4.53]	Affymetrix [426851] (imputed)	N
715	chr6	17127705	17127706	rs9367942	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	6p22.3	Intergenic	rs9367942-A	0.1383	6E-9	(MTAG)	0.0151	[0.01-0.02] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
715	chr6	17127705	17127706	rs9367942	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	6p22.3	Intergenic	rs9367942-A	0.1381	1E-11	(MTAG)	0.0163	[0.012-0.021] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
715	chr6	17127705	17127706	rs9367942	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6p22.3		rs9367942-A	0.1387	2E-8	(conditional-joint)	0.0114	[0.0075-0.0153] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
715	chr6	17127705	17127706	rs9367942	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6p22.3	Intergenic	rs9367942-A	0.1387	3E-10	(MTAG)	0.012	[0.0083-0.0157] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
715	chr6	17161117	17161118	rs9396756	26806518	Hou L	2016-01-22	Lancet	Genetic variants associated with response to lithium treatment in bipolar disorder: a genome-wide association study.	Response to lithium treatment in bipolar disorder (dichotomous phenotype)	659 European ancestry responders, 1,684 European ancestry non-responders	NA	6p22.3	Intergenic	rs9396756-C	0.15	3E-7		1.64	[1.36-1.97]	Affymetrix, Illumina [> 6000000] (imputed)	N
715	chr6	17164807	17164808	rs13201459	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	6p22.3	NR	rs13201459-?	NR	4E-8				Illumina [7760689] (imputed)	N
716	chr6	17241153	17241154	rs1322846	22542470	Ovsyannikova IG	2012-04-25	Vaccine	Genome-wide association study of antibody response to smallpox vaccine.	Immune response to smallpox vaccine (IL-6)	217 African American individuals, 580 European ancestry individuals, 217 Hispanic individuals	NA	6p22.3	RBM24	rs1322846-?		6E-7	(AA)			Illumina [NR]	N
716	chr6	17283320	17283321	rs3749855	25524916	Palmer ND	2014-12-18	Diabetes	Genetic Variants Associated With Quantitative Glucose Homeostasis Traits Translate to Type 2 Diabetes in Mexican Americans: The GUARDIAN (Genetics Underlying Diabetes in Hispanics) Consortium.	Glucose homeostasis traits	up to 4,176 Mexican American individuals	NA	6p22.3	RBM24	rs3749855-?		5E-6	(MCRI)	0.52	[0.28-0.76] unit decrease	Illumina [693128]	N
717	chr6	17335401	17335402	rs7776409	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Pursuit maintenance gain	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	6p22.3	RBM24	rs7776409-G	0.0	1E-6	(EA)			Illumina [4404269] (imputed)	N
717	chr6	17369026	17369027	rs1320997	29213071	Mendez-Giraldez R	2017-12-06	Sci Rep	GWAS of the electrocardiographic QT interval in Hispanics/Latinos generalizes previously identified loci and identifies population-specific signals.	QT interval	15,997 Hispanic/Latino individuals	NA	6p22.3	CAP2	rs1320997-A	0.07	3E-7		2.27	[1.41-3.13] ms increase	Affymetrix, Illumina [up to 17586686] (imputed)	N
717	chr6	17387537	17387538	rs10807610	33888516	Zheng T	2021-04-22	Gut	Genome-wide analysis of 944 133 individuals provides insights into the etiology of haemorrhoidal disease.	Haemorrhoidal disease	218,920 European ancestry cases, 725,213 European ancestry controls	NA	6p22.3	CAP2	rs10807610-?	0.17720000000000002	2E-12		1.04	[1.03-1.05]	Affymetrix, Illumina [8494288] (imputed)	N
717	chr6	17416257	17416258	rs34192788	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	6p22.3	NR	rs34192788-T	0.689665	1E-9		0.0130377	[0.0088-0.0173] unit increase	Affymetrix [16583148] (imputed)	N
717	chr6	17416257	17416258	rs34192788	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	6p22.3	NR	rs34192788-T	0.690326	4E-9		0.0198155	[0.013-0.026] unit increase	Affymetrix [16577424] (imputed)	N
717	chr6	17422535	17422536	rs10485376	25240745	Lopez S	2014-09-18	Mitochondrion	A genome-wide association study in the genetic analysis of idiopathic thrombophilia project suggests sex-specific regulation of mitochondrial DNA levels.	Mitochondrial DNA levels	173 European ancestry males and 213 European ancestry females from 21 families	NA	6p22.3	CAP2	rs10485376-?	NR	2E-6			[NR]	Illumina [283437]	N
717	chr6	17429039	17429040	rs113380185	34239500	Livingstone KM	2021-06-22	Front Endocrinol (Lausanne)	Discovery Genome-Wide Association Study of Body Composition in 4,386 Adults From the UK Biobank's Pilot Imaging Enhancement Study.	Gynoid fat mass	2,109 White British ancestry male individuals	NA	6p22.3		rs113380185-T	NR	2E-8		959.03	g increase	NR [6137607] (imputed)	N
718	chr6	17505943	17505944	rs910039	25897834	Biernacka JM	2015-04-21	Transl Psychiatry	The International SSRI Pharmacogenomics Consortium (ISPC): a genome-wide association study of antidepressant treatment response.	Response to serotonin reuptake inhibitors in major depressive disorder	298 European ancestry cases, 567 Asian ancestry cases, 1529 European and other ancestry cases	NA	6p22.3	CAP2	rs910039-?	NR	2E-6	(% Change in score)	0.13	[NR] unit increase	Illumina [~ 7000000] (imputed)	N
718	chr6	17522985	17522986	rs7760870	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	6p22.3	NR	rs7760870-?	NR	4E-7		0.0090011	[0.0055-0.0125] unit decrease	Affymetrix [805426] (imputed)	N
718	chr6	17535018	17535019	rs9465045	35131881	Testori A	2022-02-07	Cancer Epidemiol Biomarkers Prev	Genetic analysis in African American children supports ancestry specific neuroblastoma susceptibility.	Neuroblastoma	254 African American cases, 2,990 African American controls	NA	6p22.3		rs9465045-C	NR	9E-6		1.0216	unit increase	Illumina [NR] (imputed)	N
719	chr6	17606204	17606205	rs79642714	29608535	Kuehn MH	2018-03-30	J Neuroophthalmol	Genetic Survey of Adult-Onset Idiopathic Intracranial Hypertension.	Idiopathic intracranial hypertension	63 European ancestry cases, 21 African American cases, 4 Native American cases, 1 Asian cases, 6 cases, 61 European ancestry controls, 21 African American controls, 3 Native American controls, 1 Asian controls, 9 controls	NA	6p22.3	FAM8A1	rs79642714-?	NR	2E-7				Illumina [301908]	N
719	chr6	17633060	17633061	rs2274136	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA		NUP153	rs2274136-G	0.228	5E-6	(TC )	0.03	[NR] mg/dL increase	Illumina [899892]	N
719	chr6	17633060	17633061	rs2274136	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA		NUP153	rs2274136-G	0.228	3E-6	(LDL )	0.03	[NR] mg/dL increase	Illumina [899892]	N
719	chr6	17658031	17658032	rs114812432	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		NUP153	rs114812432-?	NR	7E-9		1.96459	[NR] unit decrease	Affymetrix [NR] (imputed)	N
719	chr6	17689855	17689856	rs146343288	30898391	Lawrenson K	2019-03-19	Gynecol Oncol	Genome-wide association studies identify susceptibility loci for epithelial ovarian cancer in east Asian women.	Epithelial ovarian cancer	3,238 East Asian ancestry cases, 4,083 East Asian ancestry controls	NA	6p22.3		rs146343288-?	NR	3E-6	(serous_hg)	1.48		Illumina [11595112] (imputed)	N
720	chr6	17699321	17699322	rs12199222	18391951	Gudbjartsson DF	2008-04-06	Nat Genet	Many sequence variants affecting diversity of adult human height.	Height	30,968 European ancestry individuals	8,541 European ancestry individuals		NUP153, CAP2, KIF13A	rs12199222-T	0.33	7E-7		4.4	[2.64-6.16] % s.d. increase	Affymetrix, Illumina [up to 304226]	N
720	chr6	17746014	17746015	rs187976596	27770449	Tamm R	2016-10-22	Clin Pharmacol Ther	Polymorphic variation in TPMT is the principal determinant of TPMT phenotype: A meta-analysis of three genome-wide association studies.	Thiopurine S-methyltransferase activity	844 European ancestry individuals (blood measurement), 123 European ancestry individuals (liver measurement), 245 acute lymphoblastic leukemia cases (blood measurement)	NA	6p22.3	intergenic	rs187976596-G	0.021	4E-12		1.06	unit decrease	Illumina [at least 7481872] (imputed)	N
721	chr6	17886044	17886045	rs75428660	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	6p22.3		rs75428660-G	0.03	1E-9		6.09	z score increase	Affymetrix [9061022] (imputed)	N
721	chr6	17886044	17886045	rs75428660	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	6p22.3		rs75428660-G	0.03	5E-9		5.85	z score increase	Affymetrix [9061022] (imputed)	N
721	chr6	17886044	17886045	rs75428660	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	6p22.3	NR	rs75428660-G	0.0411	2E-8				NR [9056863] (imputed)	N
721	chr6	17890287	17890288	rs9477551	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels	18,590 European ancestry individuals	NA	6p22.3		rs9477551-?	NR	4E-6		0.12	[0.071-0.169] unit increase	Affymetrix, Illumina [NR] (imputed)	N
721	chr6	17913076	17913077	rs1014146	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	6p22.3		rs1014146-?	NR	2E-11				NR [~ 8900000] (imputed)	N
721	chr6	17926323	17926324	rs75964046	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6p22.3	NR	rs75964046-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
723	chr6	18101893	18101894	rs6907850	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	Intrinsic epigenetic age acceleration	34,461 European ancestry individuals, 6,148 African American individuals	NA	6p22.3	NR	rs6907850-?	NR	1E-17				Affymetrix, Illumina [6211246] (imputed)	N
723	chr6	18103027	18103028	rs73726531	27770449	Tamm R	2016-10-22	Clin Pharmacol Ther	Polymorphic variation in TPMT is the principal determinant of TPMT phenotype: A meta-analysis of three genome-wide association studies.	Thiopurine S-methyltransferase activity	844 European ancestry individuals (blood measurement), 123 European ancestry individuals (liver measurement), 245 acute lymphoblastic leukemia cases (blood measurement)	NA	6p22.3	TPMT	rs73726531-G	0.031	1E-72		2.2	unit decrease	Illumina [at least 7481872] (imputed)	N
723	chr6	18104699	18104700	rs7744541	31738745	Gibson J	2019-11-18	PLoS Genet	A meta-analysis of genome-wide association studies of epigenetic age acceleration.	Intrinsic epigenetic age acceleration	13,493 European ancestry individuals	NA	6p22.3	NR	rs7744541-A	0.4184	2E-15		0.4388	[0.33-0.55] unit increase	Illumina [5932107] (imputed)	N
723	chr6	18105094	18105095	rs11969064	30806694	Walker GJ	2019-02-01	JAMA	Association of Genetic Variants in NUDT15 With Thiopurine-Induced Myelosuppression in Patients With Inflammatory Bowel Disease.	Thiopurine-induced myelosuppression in inflammatory bowel disease	311 European ancestry cases, 608 European ancestry controls	NA	6p22.3	TPMT	rs11969064-?	NR	5E-9		2.3	[1.7-3.1]	NR [6272335] (imputed)	N
723	chr6	18106075	18106076	rs4294009	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation PhenoAge acceleration	34,463 European ancestry individuals	NA	6p22.3	NR	rs4294009-G	0.3883	1E-17		0.3359	[0.26-0.41] unit increase	Affymetrix, Illumina [7568033] (imputed)	N
723	chr6	18110555	18110556	rs6915893	29374233	Lu AT	2018-01-26	Nat Commun	GWAS of epigenetic aging rates in blood reveals a critical role for TERT.	Intrinsic epigenetic age acceleration	8,393 European ancestry individuals	1,023 African American individuals, 491 Hispanic individuals	6p22.3	KIF13A, NHLRC1	rs6915893-T	0.39	2E-13		0.5197	[0.38-0.66] unit increase	Affymetrix, Illumina [~ 7400000] (imputed)	N
723	chr6	18114245	18114246	rs143093668	29374233	Lu AT	2018-01-26	Nat Commun	GWAS of epigenetic aging rates in blood reveals a critical role for TERT.	Intrinsic epigenetic age acceleration	8,393 European ancestry individuals	1,023 African American individuals, 491 Hispanic individuals	6p22.3	KIF13A, NHLRC1	rs143093668-T	0.05	4E-25		1.6799	[1.36-2] unit decrease	Affymetrix, Illumina [~ 7400000] (imputed)	N
723	chr6	18117605	18117606	rs141229558	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Rubella	12,000 European ancestry cases, 71,597 European ancestry controls	NA	6p22.3	NR	rs141229558-?	NR	6E-6		0.4987	[0.29-0.71] unit increase	Illumina [at least 560000] (imputed)	N
723	chr6	18117954	18117955	rs150772783	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phenylalanine levels	115,030 European ancestry individuals	NA	6p22.3		rs150772783-C	0.9503	5E-9		0.0558073	[0.037-0.074] unit increase	NR [11722792] (imputed)	N
723	chr6	18120292	18120293	rs75407001	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation PhenoAge acceleration	34,463 European ancestry individuals	NA	6p22.3	NR	rs75407001-T	0.0488	1E-21		1.1184	[0.89-1.35] unit decrease	Affymetrix, Illumina [7568033] (imputed)	N
723	chr6	18121028	18121029	rs10949481	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	Intrinsic epigenetic age acceleration	34,461 European ancestry individuals	NA	6p22.3	NR	rs10949481-T	0.0532	4E-54		1.0823	[0.95-1.22] unit decrease	Affymetrix, Illumina [7567980] (imputed)	N
723	chr6	18121313	18121314	rs10949482	30201983	Tulstrup M	2018-09-10	Leukemia	NT5C2 germline variants alter thiopurine metabolism and are associated with acquired NT5C2 relapse mutations in childhood acute lymphoblastic leukaemia.	Erythrocyte thioguanine concentration in 6-mercaptopurine-treated acute lymphoblastic leukaemia	452 European ancestry individuals	NA	6p22.3	TPMT	rs10949482-T	NR	1E-33				Illumina [NR]	N
723	chr6	18121313	18121314	rs10949482	30201983	Tulstrup M	2018-09-10	Leukemia	NT5C2 germline variants alter thiopurine metabolism and are associated with acquired NT5C2 relapse mutations in childhood acute lymphoblastic leukaemia.	Erythrocyte methylated 6-mercaptopurine metabolite concentration in 6-mercaptopurine-treated acute lymphoblastic leukaemia	up to 454 European ancestry individuals	NA	6p22.3	TPMT	rs10949482-T	NR	1E-20				Illumina [NR]	N
723	chr6	18122505	18122506	rs10949483	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	Intrinsic epigenetic age acceleration	34,461 European ancestry individuals	NA	6p22.3	NR	rs10949483-A	0.392	5E-32		0.3697	[0.31-0.43] unit increase	Affymetrix, Illumina [7567980] (imputed)	N
723	chr6	18124229	18124230	rs73724422	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	Intrinsic epigenetic age acceleration	6,148 African American individuals	NA	6p22.3	NR	rs73724422-T	0.9314	7E-23		1.8143	[1.45-2.18] unit increase	Affymetrix, Illumina [12989965] (imputed)	N
723	chr6	18128200	18128201	rs78631584	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation PhenoAge acceleration	34,463 European ancestry individuals, 6,148 African American individuals	NA	6p22.3	NR	rs78631584-?	NR	1E-17				Affymetrix, Illumina [6210360] (imputed)	N
723	chr6	18130917	18130918	rs1142345	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation PhenoAge acceleration	6,148 African American individuals	NA	6p22.3	NR	rs1142345-T	0.9424	1E-12		1.9551	[1.42-2.49] unit increase	Affymetrix, Illumina [12989038] (imputed)	N
723	chr6	18130917	18130918	rs1142345	27564568	Liu C	2016-08-26	Clin Pharmacol Ther	Genomewide Approach Validates Thiopurine Methyltransferase Activity Is a Monogenic Pharmacogenomic Trait.	Thiopurine methyltransferase activity in acute lymphoblastic leukemia patients treated with mercaptopurines	up to 407 European ancestry cases, up to 138 African ancestry cases, up to 251 Hispanic cases, up to 57 Asian ancestry cases, up to 110 other ancestry cases	NA	6p22.3	TPMT	rs1142345-?	NR	9E-61		7.69	unit decrease	Affymetrix, Illumina [9000000] (imputed)	N
723	chr6	18140562	18140563	rs76244256	31738745	Gibson J	2019-11-18	PLoS Genet	A meta-analysis of genome-wide association studies of epigenetic age acceleration.	Intrinsic epigenetic age acceleration	13,493 European ancestry individuals	NA	6p22.3	NR	rs76244256-T	0.0457	6E-26		1.3414	[1.09-1.59] unit decrease	Illumina [5932107] (imputed)	N
723	chr6	18152189	18152190	rs79050301	30201983	Tulstrup M	2018-09-10	Leukemia	NT5C2 germline variants alter thiopurine metabolism and are associated with acquired NT5C2 relapse mutations in childhood acute lymphoblastic leukaemia.	DNA-incorporated thioguanine levels in 6-mercaptopurine-treated acute lymphoblastic leukaemia	443 European ancestry individuals	NA	6p22.3	TPMT	rs79050301-C	NR	8E-10				Illumina [NR]	N
723	chr6	18152292	18152293	rs77032929	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p22.3	NR	rs77032929-C	0.0453	2E-13	(TPMT)	0.04701	NR unit decrease	Illumina [1671387] (imputed)	N
723	chr6	18152819	18152822	rs201170640	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p22.3	NR	rs201170640-T	0.03659	1E-15	(TPMT)	0.05459	NR unit decrease	Illumina [1671387] (imputed)	N
723	chr6	18173914	18173915	rs188911996	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	6p22.3	Intergenic	rs188911996-A	NR	2E-8	(between families)	5.578	unit increase	Affymetrix [up to 15107142] (imputed)	N
723	chr6	18210108	18210109	rs34969716	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atrial fibrillation/atrial flutter	29,212 European ancestry cases, 400,539 European ancestry controls, 4,150 East Asian ancestry cases, 155,540 East Asian ancestry controls	NA	6p22.3		rs34969716-A	NR	1E-12		0.0732	[0.053-0.093] unit increase	Affymetrix, Illumina [25830072] (imputed)	N
723	chr6	18210108	18210109	rs34969716	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	6p22.3	KDM1B, DEK	rs34969716-A	0.305	2E-19		1.07	[1.06-1.09]	Illumina [34740186] (imputed)	N
723	chr6	18210108	18210109	rs34969716	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	6p22.3	KDM1B	rs34969716-A	0.31	4E-22	(EA)	1.09	[1.07-1.11]	Affymetrix, Illumina [up to 12149979] (imputed)	N
723	chr6	18210108	18210109	rs34969716	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	6p22.3	KDM1B	rs34969716-A	0.31	3E-25		1.09	[1.07-1.11]	Affymetrix, Illumina [up to 12149979] (imputed)	N
724	chr6	18227545	18227546	rs214502	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	6p22.3	DEK	rs214502-A	0.58	1E-10		0.42	[0.28-0.56] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
724	chr6	18227545	18227546	rs214502	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	6p22.3	DEK	rs214502-A	0.592	5E-10		0.4234	[0.29-0.56] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
724	chr6	18229645	18229646	rs145578678	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	6p22.3	NR	rs145578678-C	NR	3E-6	(GEE model)	1.1492	[0.67-1.63] unit increase	NR [NR] (imputed)	N
724	chr6	18267735	18267736	rs148222927	27770449	Tamm R	2016-10-22	Clin Pharmacol Ther	Polymorphic variation in TPMT is the principal determinant of TPMT phenotype: A meta-analysis of three genome-wide association studies.	Thiopurine S-methyltransferase activity	844 European ancestry individuals (blood measurement), 123 European ancestry individuals (liver measurement), 245 acute lymphoblastic leukemia cases (blood measurement)	NA	6p22.3	intergenic	rs148222927-A	0.014	5E-34		2.85	unit decrease	Illumina [at least 7481872] (imputed)	N
724	chr6	18319548	18319549	rs7451115	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6p22.3	DEK	rs7451115-?	NR	1E-7	(indoxyl sulfate)	0.50652933	[0.32-0.7] unit decrease	Affymetrix [at least 2500000] (imputed)	N
724	chr6	18319706	18319707	rs62397713	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure	35,269 European ancestry cases, 63,451 European ancestry controls	NA	6p22.3	NR	rs62397713-G	0.866915	9E-6		1.066098	[1.04-1.1]	Affymetrix [7791636] (imputed)	N
724	chr6	18342259	18342260	rs13208674	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Caudal middle frontal gyrus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	6p22.3	RNF144B	rs13208674-?		9E-6				Illumina [4322238] (imputed)	N
725	chr6	18361878	18361878	rs780977479	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Citrate levels	115,068 European ancestry individuals	NA	6p22.3		rs780977479-CCCG,rs780977479-CCCG	0.406552	2E-15		0.0364561	[0.027-0.045] unit decrease	NR [11722792] (imputed)	N
725	chr6	18361878	18361878	rs780977479	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Citrate levels	115,068 European ancestry individuals	NA	6p22.3		rs780977479-CCCG,rs780977479-CCCG	0.406552	2E-15		0.0364561	[0.027-0.045] unit decrease	NR [11722792] (imputed)	N
725	chr6	18385888	18385889	rs7748189	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Dorea)	1,068 Japanese ancestry individuals	NA	6p22.3	RNF144B	rs7748189-G	0.22	4E-6	(male)	0.0555	[0.032-0.079] unit decrease	Illumina [6380737] (imputed)	N
725	chr6	18387691	18387692	rs9396858	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p22.3	RNF144B	rs9396858-A	0.701402	3E-9	(318 ms)	0.0344599	[0.023-0.046] unit increase	Affymetrix [10000000] (imputed)	N
725	chr6	18387691	18387692	rs9396858	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p22.3	RNF144B	rs9396858-A	0.701402	2E-8	(312 ms)	0.0326102	[0.021-0.044] unit increase	Affymetrix [10000000] (imputed)	N
725	chr6	18387691	18387692	rs9396858	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p22.3	RNF144B	rs9396858-A	0.701402	2E-8	(302 ms)	0.0328947	[0.021-0.045] unit increase	Affymetrix [10000000] (imputed)	N
725	chr6	18387691	18387692	rs9396858	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p22.3	RNF144B	rs9396858-A	0.701402	1E-8	(316 ms)	0.0331305	[0.021-0.045] unit increase	Affymetrix [10000000] (imputed)	N
725	chr6	18387691	18387692	rs9396858	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p22.3	RNF144B	rs9396858-A	0.701402	1E-8	(314 ms)	0.0332631	[0.021-0.045] unit increase	Affymetrix [10000000] (imputed)	N
725	chr6	18404132	18404133	rs9396861	34450027	Boer CG	2021-08-24	Cell	Deciphering osteoarthritis genetics across 826,690 individuals from 9 populations.	Finger osteoarthritis	10,804 European ancestry cases, 255,814 European ancestry controls	NA	6p22.3		rs9396861-A	0.6097	9E-11		1.1253567	[1.085921196-1.166224193]	Affymetrix, Illumina [NR] (imputed)	N
725	chr6	18431694	18431695	rs478281	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Citrate levels	115,068 European ancestry individuals	NA	6p22.3		rs478281-A	0.671081	2E-8		0.0242811	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
725	chr6	18460735	18460736	rs56249772	27770449	Tamm R	2016-10-22	Clin Pharmacol Ther	Polymorphic variation in TPMT is the principal determinant of TPMT phenotype: A meta-analysis of three genome-wide association studies.	Thiopurine S-methyltransferase activity	844 European ancestry individuals (blood measurement), 123 European ancestry individuals (liver measurement), 245 acute lymphoblastic leukemia cases (blood measurement)	NA	6p22.3	RNF144B	rs56249772-T	0.028	1E-10		0.86	unit decrease	Illumina [at least 7481872] (imputed)	N
725	chr6	18467639	18467639	rs70974747	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	6p22.3	RNF144B	rs70974747-T	0.7051	5E-9		0.0123	[0.0082-0.0164] unit decrease	Affymetrix [18391927] (imputed)	N
726	chr6	18492349	18492350	rs5017416	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6p22.3	NR	rs5017416-?	NR	6E-9				Affymetrix [~ 8270000] (imputed)	N
726	chr6	18492349	18492350	rs5017416	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	6p22.3		rs5017416-?	NR	6E-9				NR [~ 8900000] (imputed)	N
726	chr6	18492349	18492350	rs5017416	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	6p22.3	NR	rs5017416-?	NR	4E-8				Illumina [7760689] (imputed)	N
726	chr6	18492349	18492350	rs5017416	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	6p22.3	NA	rs5017416-T	0.0504	1E-10		0.0285	[0.02-0.037] unit increase	NR [~ 27400000] (imputed)	N
726	chr6	18507852	18507853	rs9477762	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		6p22.3	RNF144B	rs9477762-A	0.945907	4E-11		0.0201859	[0.014-0.026] unit decrease	Affymetrix [12370749]	N
726	chr6	18524373	18524374	rs1853655	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6p22.3		rs1853655-?	NR	3E-11				NR [~ 8900000] (imputed)	N
726	chr6	18554367	18554368	rs9371068	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6p22.3	DEK	rs9371068-?	NR	3E-6	(quinolinic acid)	0.17444369	[0.1-0.25] unit increase	Affymetrix [at least 2500000] (imputed)	N
726	chr6	18557376	18557377	rs12194155	30120083	Ferguson A	2018-08-14	EBioMedicine	Genome-Wide Association Study of Circadian Rhythmicity in 71,500 UK Biobank Participants and Polygenic Association with Mood Instability.	Relative amplitude of rest-activity cycles	77,440 European ancestry individuals	NA	6p22.3	MIR548A1HG	rs12194155-?	NR	2E-6		0.003	unit decrease	Affymetrix [7969123] (imputed)	N
726	chr6	18569502	18569503	rs72837534	30942860	Shin J	2019-04-03	J Clin Endocrinol Metab	Novel genetic locus of visceral fat and systemic inflammation.	Visceral fat	1589 French-Canadian ancestry individuals	NA	6p22.3	Intergenic	rs72837534-C	NR	6E-6	(adjusted for subcutaneous fat)	0.22	[0.13-0.31] unit increase	Illumina [8511049] (imputed)	N
726	chr6	18575299	18575300	rs6916983	31324189	Kim W	2019-07-19	Respir Res	DSP variants may be associated with longitudinal change in quantitative emphysema.	Emphysema annual change measurement in smokers (adjusted lung density)	4,427 European ancestry individuals, 1,158 African American individuals	NA	6p22.3	RNF144B	rs6916983-T	0.725	4E-6	(EA)	0.102	[0.059-0.145] unit decrease	Illumina [NR] (imputed)	N
726	chr6	18578951	18578952	rs9477788	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	6p22.3		rs9477788-A	NR	2E-8		0.0263	[0.017-0.036] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
726	chr6	18589132	18589133	rs7761214	29921221	Cha S	2018-06-19	BMC Genomics	Identification of five novel genetic loci related to facial morphology by genome-wide association studies.	Upper eyelid morphology	5,643 Korean ancestry individuals	1,926 Korean ancestry individuals	6p22.3	MIR548A1	rs7761214-A	0.23	8E-6	(Tangent line angle of el2)	0.01	[NR] unit increase	Affymetrix [311944]	N
726	chr6	18594702	18594703	rs375475939	31073882	Plotnikov D	2019-05-09	Hum Genet	A commonly occurring genetic variant within the NPLOC4-TSPAN10-PDE6G gene cluster is associated with the risk of strabismus.	Strabismus	1,345 British ancestry cases, 65,349 British ancestry controls	116 cases, 5,084 controls	6p22.3	NR	rs375475939-C	0.03	7E-8	(EA)	1.65	[1.38-1.98]	Affymetrix [7469170] (imputed)	N
727	chr6	18684870	18684871	rs9465187	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	6p22.3	Intergenic	rs9465187-?	NR	2E-6		1.372	[NR]	Affymetrix [492217] (imputed)	N
728	chr6	18747704	18747705	rs6924805	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	6p22.3		rs6924805-T	NR	1E-9		0.013	[0.0089-0.0171] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
728	chr6	18747704	18747705	rs6924805	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p22.3	NR	rs6924805-G	0.409009	1E-15				Affymetrix, Illumina [22063850] (imputed)	N
728	chr6	18747704	18747705	rs6924805	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	6p22.3	RNF144B	rs6924805-G	0.412362	4E-8		0.0111417	[0.0072-0.0151] unit increase	Affymetrix [NR] (imputed)	N
728	chr6	18747704	18747705	rs6924805	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	6p22.3		rs6924805-?	NR	2E-14				NR [~ 8900000] (imputed)	N
728	chr6	18756485	18756486	rs9477866	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	6p22.3	NR	rs9477866-G	0.589304	5E-13		0.01383	[0.01-0.018] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
728	chr6	18757313	18757314	rs11962130	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	6p22.3		rs11962130-C	0.557154	1E-11		0.015135306	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
728	chr6	18757313	18757314	rs11962130	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6p22.3		rs11962130-C	0.55707	1E-10		0.014216642	[0.0099-0.0186] unit increase	Affymetrix [93095623] (imputed)	N
728	chr6	18757313	18757314	rs11962130	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	6p22.3		rs11962130-C	0.557111	1E-11		0.0147874	[0.011-0.019] unit increase	Affymetrix [93095623] (imputed)	N
728	chr6	18757313	18757314	rs11962130	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	6p22.3	NR	rs11962130-C	0.555846	1E-15		0.015709	[0.012-0.02] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
728	chr6	18757313	18757314	rs11962130	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p22.3	NR	rs11962130-C	0.589191	8E-11				Affymetrix, Illumina [24246363] (imputed)	N
728	chr6	18757313	18757314	rs11962130	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	6p22.3	NR	rs11962130-C	0.556755	1E-10		0.012961	[0.009-0.0169] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
728	chr6	18778752	18778753	rs6936554	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	6p22.3		rs6936554-T	NR	7E-9		0.0099	[0.0066-0.0132] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
728	chr6	18791722	18791723	rs41441749	18821565	Lasky-Su J	2008-12-05	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association scan of quantitative traits for attention deficit hyperactivity disorder identifies novel associations and confirms candidate gene associations.	Hyperactive-impulsive symptoms	930 European ancestry trios	NA	6p22.3	intergenic	rs41441749-?	NR	1E-6	(binary)			Perlegen [429981]	N
728	chr6	18804726	18804727	rs12199083	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	6p22.3		rs12199083-?	NR	5E-9				NR [~ 8900000] (imputed)	N
728	chr6	18837243	18837244	rs2225718	31763980	Xiong Z	2019-11-25	Elife	Novel genetic loci affecting facial shape variation in humans.	Facial morphology	10,115 European ancestry individuals	NA	6p22.3	RNF144B	rs2225718-C	0.42	3E-8	(right endocanthion-right alare distance)	0.086	NR unit decrease	Illumina [7029494] (imputed)	N
728	chr6	18843809	18843810	rs11756035	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	6p22.3	NR	rs11756035-C	0.1281	1E-8		1.052	[1.03-1.07]	Affymetrix, Illumina [NR] (imputed)	N
728	chr6	18862439	18862440	rs113408367	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6p22.3	NR	rs113408367-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
729	chr6	18891694	18891695	rs9396917	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6p22.3	DEK	rs9396917-?	NR	4E-6	(orotic acid)	0.26009065	[0.15-0.37] unit increase	Affymetrix [at least 2500000] (imputed)	N
729	chr6	18913379	18913380	rs9477927	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	6p22.3	intergenic	rs9477927-T	0.561	5E-8		0.1044	[0.067-0.142] mmHg increase	Affymetrix [NR] (imputed)	N
729	chr6	18914210	18914211	rs912981	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	6p22.3	NR	rs912981-C	NR	2E-11		0.0169	[0.012-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
729	chr6	18926056	18926057	rs77804402	30942860	Shin J	2019-04-03	J Clin Endocrinol Metab	Novel genetic locus of visceral fat and systemic inflammation.	Visceral fat	1589 French-Canadian ancestry individuals	NA	6p22.3	Intergenic	rs77804402-A	NR	2E-7	(adjusted for subcutaneous fat)	0.27	[0.17-0.37] unit increase	Illumina [8511049] (imputed)	N
729	chr6	18955170	18955171	rs10456847	27601451	Sanders AE	2016-09-06	J Dent Res	Chronic Periodontitis Genome-wide Association Study in the Hispanic Community Health Study / Study of Latinos.	Chronic periodontitis (mean interproximal clinical attachment level)	10,935 Hispanic individuals	4,402 European ancestry individuals, 908 African American individuals	6p22.3	LOC645157, RNF144B	rs10456847-G	0.33	3E-7	(Hispanics)	0.026	[0.016-0.036] unit decrease	Illumina [~ 20000000] (imputed)	N
729	chr6	18955803	18955804	rs2078317	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	6p22.3	NR	rs2078317-G	0.299	4E-10		0.00739849	[0.0051-0.0097] unit increase	NR [9732723] (imputed)	N
729	chr6	18991558	18991559	rs664154	25869804	Ibrahim-Verbaas CA	2015-04-14	Mol Psychiatry	GWAS for executive function and processing speed suggests involvement of the CADM2 gene.	Information processing speed	Up to 30,807 European ancestry individuals, up to 1,267 Erasmus Rucphen (founder/genetic isolated) individuals, up to 535 Korculan (founder/genetic isolated) individuals, up to 417 Orcadian (founder/genetic isolated) individuals, up to 311 Vis (founder/genetic isolated) individuals	Up to 8,436 European ancestry individuals, up to 1,444 African American individuals	6p22.3	RP1-239K6.1	rs664154-A	0.24	5E-7	(LDST/DSST - age and sex adjusted)	5.03	[NR] unit increase	Affymetrix, Illumina [up to 2357391] (imputed)	N
730	chr6	19023725	19023726	rs1322537	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6p22.3		rs1322537-T	0.8277	2E-20	(conditional-joint)	0.0172	[0.013-0.021] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
730	chr6	19025740	19025741	rs4716325	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.3	ENSG00000217379	rs4716325-C	NR	1E-8		5.692	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
730	chr6	19028622	19028623	rs12216497	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	6p22.3	RNF144B	rs12216497-T	0.557	5E-8		0.0065	[0.0041-0.0089] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
730	chr6	19028622	19028623	rs12216497	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	NA	6p22.3	RNF144B	rs12216497-C	0.4384	2E-10		0.1307	[0.09-0.171] unit decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
730	chr6	19028787	19028788	rs975303	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	6p22.3	Intergenic	rs975303-A	0.8276	2E-16	(MTAG)	0.0195	[0.015-0.024] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
730	chr6	19028787	19028788	rs975303	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	6p22.3	Intergenic	rs975303-A	0.8276	4E-12		0.0179	[0.013-0.023] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
730	chr6	19028787	19028788	rs975303	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	6p22.3	Intergenic	rs975303-A	0.8271	1E-22	(MTAG)	0.0214	[0.017-0.026] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
730	chr6	19028787	19028788	rs975303	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	6p22.3	Intergenic	rs975303-A	0.8271	3E-9		0.0178	[0.012-0.024] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
730	chr6	19028787	19028788	rs975303	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	6p22.3	Intergenic	rs975303-A	0.8191	6E-14	(MTAG)	0.0223	[0.016-0.028] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
730	chr6	19036034	19036035	rs72828517	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	6p22.3		rs72828517-?	NR	2E-15				NR [~ 8900000] (imputed)	N
730	chr6	19036034	19036035	rs72828517	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6p22.3		rs72828517-T	0.8273	1E-19		0.0168	[0.013-0.021] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
730	chr6	19036034	19036035	rs72828517	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6p22.3	Intergenic	rs72828517-T	0.8273	8E-23	(MTAG)	0.017	[0.014-0.02] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
730	chr6	19036034	19036035	rs72828517	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	6p22.3	ENSG00000217379	rs72828517-T	NR	3E-8		0.022396207	[0.014-0.03] unit decrease	Affymetrix [NR]	N
730	chr6	19053842	19053843	rs2142644	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	6p22.3	intergenic	rs2142644-A	0.672	3E-19		0.0181	[0.014-0.022] unit decrease	Affymetrix [18391927] (imputed)	N
730	chr6	19065341	19065342	rs72828532	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Automobile speeding propensity	404,291 European ancestry individuals	NA	6p22.3	ID4	rs72828532-T	0.8195	3E-12		0.020396648	[0.015-0.026] unit decrease	Affymetrix [11514463] (imputed)	N
730	chr6	19065679	19065680	rs72828533	30531941	Doherty A	2018-12-10	Nat Commun	GWAS identifies 14 loci for device-measured physical activity and sleep duration.	Sleep duration	91,105 European ancestry individuals	NA	6p22.3	LOC101928519	rs72828533-A	0.818	3E-13		0.043	[0.031-0.055] SD units increase	NR [9926106] (imputed)	N
730	chr6	19076416	19076417	rs9350100	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Age at voice drop	55,871 European ancestry individuals	NA	6p22.3	RNF144B, ID4	rs9350100-?	NR	1E-7		0.036	[-0.049-0.023] unit decrease	Illumina [12039491]	N
730	chr6	19078273	19078274	rs2842385	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (age at voice breaking MTAG)	205,354 European ancestry individuals	NA	6p22.3		rs2842385-G	NR	3E-11		0.027400268	[0.019-0.035] years increase	NR [7400000] (imputed)	N
730	chr6	19078273	19078274	rs2842385	25644384	Davies G	2015-02-03	Mol Psychiatry	Genetic contributions to variation in general cognitive function: a meta-analysis of genome-wide association studies in the CHARGE consortium (N=53949).	Cognitive function	51,719 European ancestry individuals, 1,473 Erasmus Rucphen (founder/genetic isolate) individuals, 327 Korculan (founder/genetic isolate) individuals, 430 Orcadian (founder/genetic isolate) individuals	NA	6p22.3	LOC101928519	rs2842385-?	NR	8E-6		0.0311	[0.017-0.045] unit decrease	Affymetrix, Illumina [2478500] (imputed)	N
730	chr6	19080190	19080191	rs2742986	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	6p22.3	RNF144B, ID4	rs2742986-T	0.6335	3E-9		0.0103924	[0.0069-0.0138] unit decrease	Affymetrix [11880941] (imputed)	N
730	chr6	19082662	19082663	rs9477970	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.3	ENSG00000217379	rs9477970-A	NR	4E-9		5.903	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
730	chr6	19089713	19089718	rs71868007	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Measles	38,219 European ancestry cases, 47,279 European ancestry controls	NA	6p22.3	NR	rs71868007-?	NR	2E-7		0.0801	[0.05-0.11] unit increase	Illumina [at least 560000] (imputed)	N
730	chr6	19102246	19102247	rs9465253	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	6p22.3	RNF144B, ID4	rs9465253-T	0.2801	3E-9		1.0232666		Affymetrix [11880941] (imputed)	N
730	chr6	19102285	19102286	rs72828540	30531941	Doherty A	2018-12-10	Nat Commun	GWAS identifies 14 loci for device-measured physical activity and sleep duration.	Sleep duration	91,105 European ancestry individuals	NA	6p22.3	LOC101928519	rs72828540-T	0.751221	3E-12		0.03714042	[0.027-0.048] SD units increase	NR [9926106] (imputed)	N
731	chr6	19184833	19184834	rs2744038	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6p22.3	Intergenic	rs2744038-A	0.6761	1E-9	(MTAG)	0.0085	[0.0058-0.0112] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
731	chr6	19191045	19191046	rs77725620	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6p22.3		rs77725620-?	NR	4E-8				NR [~ 8900000] (imputed)	N
731	chr6	19205457	19205458	rs2092248	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6p22.3		rs2092248-T	0.331	2E-8		0.0083	[0.0054-0.0112] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
731	chr6	19227666	19227667	rs4712371	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6p22.3		rs4712371-A	0.1217	7E-9		0.0124	[0.0083-0.0165] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
731	chr6	19236108	19236109	rs6931743	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	6p22.3	NR	rs6931743-?	NR	2E-6	(AA)	0.9262	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
732	chr6	19324081	19324082	rs16882045	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	6p22.3		rs16882045-T	NR	3E-9		0.0191	[0.013-0.025] unit decrease	Affymetrix, Illumina [20538307] (imputed)	N
732	chr6	19341300	19341301	rs13203384	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	6p22.3	MBOAT1	rs13203384-A	0.21	4E-8				NR [> 9500000] (imputed)	N
732	chr6	19350714	19350715	rs62402815	30636644	Nazarian A	2019-01-12	Alzheimers Res Ther	Genome-wide analysis of genetic predisposition to Alzheimer's disease and related sex disparities.	Alzheimer's disease	952 European ancestry male cases, 1,789 European ancestry female cases, 6,337 European ancestry male controls, 8,402 European ancestry female controls	NA	6p22.3	LOC101928519	rs62402815-?	NR	4E-7	(females)	1.6387721		Affymetrix, Illumina [2928658] (imputed)	N
732	chr6	19350714	19350715	rs62402815	30636644	Nazarian A	2019-01-12	Alzheimers Res Ther	Genome-wide analysis of genetic predisposition to Alzheimer's disease and related sex disparities.	Alzheimer's disease	952 European ancestry male cases, 1,789 European ancestry female cases, 6,337 European ancestry male controls, 8,402 European ancestry female controls	NA	6p22.3	LOC101928519	rs62402815-?	NR	2E-6		1.4489708		Affymetrix, Illumina [2928658] (imputed)	N
732	chr6	19353010	19353011	rs7773088	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Lateral ventricle temporal horn volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	6p22.3	NR	rs7773088-?		9E-6				Illumina [4322238] (imputed)	N
732	chr6	19373813	19373814	rs9460342	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	6p22.3		rs9460342-C	0.916	3E-8		0.011	[0.0071-0.0149] unit decrease	NR [NR] (imputed)	N
732	chr6	19381385	19381386	rs10946313	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	6p22.3	NR	rs10946313-T	0.63036	2E-11		0.00542624	[0.0037-0.0071] unit increase	Affymetrix [16582909] (imputed)	N
732	chr6	19381385	19381386	rs10946313	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	6p22.3	NR	rs10946313-T	0.63036	1E-13		0.00702148	[0.0051-0.0089] unit increase	Affymetrix [16582965] (imputed)	N
732	chr6	19381385	19381386	rs10946313	30367059	Teumer A	2018-10-26	Nat Commun	Genome-wide analyses identify a role for SLC17A4 and AADAT in thyroid hormone regulation.	Free thyroxine concentration	49,269 European ancestry individuals	up to 22,383 European ancestry individuals	6p22.3	ID4	rs10946313-T	0.63	6E-12		0.044	[0.032-0.056] unit increase	Affymetrix, Illumina [8048941] (imputed)	N
732	chr6	19381869	19381870	rs9366291	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	6p22.3	NR	rs9366291-C	0.577052	4E-8		0.00630674	[0.0038-0.0088] unit increase	Affymetrix [16585854] (imputed)	N
732	chr6	19381869	19381870	rs9366291	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	6p22.3	NR	rs9366291-C	0.577052	2E-8		0.00757288	[0.0047-0.0104] unit increase	Affymetrix [16585866] (imputed)	N
733	chr6	19443934	19443935	rs16882214	23354978	Rinella ES	2013-01-25	Hum Genet	Genetic variants associated with breast cancer risk for Ashkenazi Jewish women with strong family histories but no identifiable BRCA1/2 mutation.	Breast cancer	477 Ashkenazi Jewish cases, 524 Ashkenazi Jewish controls	203 Ashkenazi Jewish cases, 263 Ashkenazi Jewish contols	6p22.3	intergenic	rs16882214-?	0.81	2E-6	(Meta P value)	1.43	[NR]	Affymetrix [435632]	N
733	chr6	19471273	19471274	rs149006697	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	6p22.3	intergenic	rs149006697-C	0.0227308987552914	3E-6	(F_Erysipelotrichaceae_RNT)	0.377017	[0.22-0.54] unit increase	Illumina [7711310] (imputed)	N
734	chr6	19628426	19628427	rs77777548	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer (early onset)	6,988 European ancestry cases, 44,256 European ancestry controls	NA	6p22.3	Intergenic	rs77777548-G	0.02	3E-8		2.94	[2.01-4.29]	Illumina [20370935] (imputed)	N
735	chr6	19677823	19677824	rs9366309	25221879	Wu K	2014-09-15	Am J Respir Crit Care Med	Genome-wide interrogation of longitudinal FEV1 in children with asthma.	Pulmonary function in asthmatics	510 European ancestry	NA	6p22.3	intergenic	rs9366309-T	0.37	7E-6	(Baseline FEV1)	0.024	[NR] unit decrease	Illumina [473680]	N
735	chr6	19702883	19702884	rs12211390	30954325	Kamboh MI	2019-03-11	Neurobiol Aging	Population-based genome-wide association study of cognitive decline in older adults free of dementia: identification of a novel locus for the attention domain.	Age-related cognitive decline (attention/processing speed) (slope of z-scores)	1,145 European ancestry individuals	NA	6p22.3	LOC101928519, ID4	rs12211390-C	0.47	9E-6		0.18	unit increase	Illumina [5600000] (imputed)	N
735	chr6	19718156	19718157	rs9368112	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	6p22.3	NR	rs9368112-C	0.4753	3E-8		0.0259	[0.017-0.035] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
735	chr6	19744128	19744129	rs9465509	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	6p22.3	NR	rs9465509-A	0.467197	2E-10		0.044717122	[0.031-0.059] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
735	chr6	19744128	19744129	rs9465509	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6p22.3		rs9465509-A	0.4824	2E-9		0.0084	[0.0057-0.0111] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
735	chr6	19748725	19748726	rs4141748	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.3	NR	rs4141748-?	NR	2E-6		4.779	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
735	chr6	19751515	19751516	rs10806906	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	6p22.3	NR	rs10806906-C	0.4479	1E-8		0.0223	[0.015-0.03] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
735	chr6	19757846	19757847	rs142467799	33437055	Panyard DJ	2021-01-12	Commun Biol	Cerebrospinal fluid metabolomics identifies 19 brain-related phenotype associations.	2-hydroxyadipate levels	291 European ancestry individuals	NA	6p22.3		rs142467799-A	0.081	6E-12		0.2454	unit decrease	Illumina [7049691] (imputed)	N
735	chr6	19771612	19771613	rs139428266	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	6p22.3	Intergenic	rs139428266-T	NR	4E-6		0.0466142	[0.027-0.066] unit decrease	Illumina [13520550] (imputed)	N
735	chr6	19773929	19773930	rs6908034	28333195	Uimari O	2017-04-01	Hum Reprod	Genome-wide genetic analyses highlight mitogen-activated protein kinase (MAPK) signaling in the pathogenesis of endometriosis.	Endometriosis	3,194 European ancestry cases, 7,060 European ancestry controls.	NA	6p22.3	ID4	rs6908034-?	NR	5E-7		1.22	[1.12-1.32]	Illumina [NR] (imputed)	N
735	chr6	19773929	19773930	rs6908034	28333195	Uimari O	2017-04-01	Hum Reprod	Genome-wide genetic analyses highlight mitogen-activated protein kinase (MAPK) signaling in the pathogenesis of endometriosis.	Deep ovarian and/or rectovaginal disease with dense adhesions	1,364 European ancestry cases, 7,060 European ancestry controls.	NA	6p22.3	ID4	rs6908034-?	NR	7E-7		1.3	[1.17-1.45]	Illumina [NR] (imputed)	N
735	chr6	19774483	19774484	rs9348394	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Small vessel stroke	333 Indian ancestry cases, 2,154 Indian ancestry controls	NA	6p22.3		rs9348394-?	NR	5E-6		0.95477736	[0.935976801537189-0.973955611049779]	Illumina [7827597] (imputed)	N
735	chr6	19781008	19781009	rs113986290	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Ulcerative colitis	12,366 European and unknown ancestry cases, 33,609 European and unknown ancestry controls	NA	6p22.3	intergenic	rs113986290-C	0.989	8E-9		1.36	[1.25-1.46]	Illumina [9578670] (imputed)	N
735	chr6	19785587	19785588	rs7739264	23104006	Nyholt DR	2012-10-28	Nat Genet	Genome-wide association meta-analysis identifies new endometriosis risk loci.	Endometriosis	3,181 European ancestry cases, 8,075 European ancestry controls, 1,423 Japanese ancestry cases, 1,318 Japanese ancestry controls	1,044 Japanese ancestry, 4,017 Japanese ancestry controls	6p22.3	NR	rs7739264-T	0.515	4E-10		1.17	[1.11-1.23]	Illumina [407632]	N
735	chr6	19790559	19790560	rs760794	28537267	Sapkota Y	2017-05-24	Nat Commun	Meta-analysis identifies five novel loci associated with endometriosis highlighting key genes involved in hormone metabolism.	Endometriosis	14,926 European ancestry cases, 189,715 European ancestry controls, 2,119 Japanese ancestry cases, 2,143 Japanese ancestry controls	NA	6p22.3	ID4	rs760794-T	0.43	7E-8	(EA)	1.08	1.05-1.11	Affymetrix, Illumina [up to 6979035] (imputed)	N
735	chr6	19790559	19790560	rs760794	28537267	Sapkota Y	2017-05-24	Nat Commun	Meta-analysis identifies five novel loci associated with endometriosis highlighting key genes involved in hormone metabolism.	Endometriosis	14,926 European ancestry cases, 189,715 European ancestry controls, 2,119 Japanese ancestry cases, 2,143 Japanese ancestry controls	NA	6p22.3	ID4	rs760794-T	0.43	2E-10		1.09	1.06-1.12	Affymetrix, Illumina [up to 6979035] (imputed)	N
736	chr6	19803767	19803768	rs6907340	23472165	Albertsen HM	2013-03-05	PLoS One	Genome-wide association study link novel loci to endometriosis.	Endometriosis	1,514 European ancestry cases, 12,660 European ancestry controls	505 European ancestry cases, 1,811 European ancestry controls	6p22.3	RNF144B, ID4	rs6907340-A	0.371	2E-7		1.2	[1.12-1.28]	Illumina [580699]	N
736	chr6	19823237	19823238	rs7773456	24925725	Chung SA	2014-06-12	J Am Soc Nephrol	Lupus nephritis susceptibility loci in women with systemic lupus erythematosus.	Lupus nephritis in systemic lupus erythematosus	588 European ancestry cases, 1,412 European ancestry controls	NA	6p22.3	intergenic	rs7773456-?	NR	7E-7	(Dominant)	1.7544	[1.43-2.17]	Affymetrix, Illumina [1621689] (imputed)	N
736	chr6	19823889	19823890	rs9465539	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on highest math class (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	6p22.3		rs9465539-?	NR	3E-8				NR [NR]	N
736	chr6	19823889	19823890	rs9465539	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on educational attainment (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	6p22.3		rs9465539-?	NR	2E-8				NR [NR]	N
736	chr6	19823889	19823890	rs9465539	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on cognitive performance (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	6p22.3		rs9465539-?	NR	3E-8				NR [NR]	N
736	chr6	19823889	19823890	rs9465539	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on Townsend deprivation index (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	6p22.3		rs9465539-?	NR	4E-8				NR [NR]	N
736	chr6	19823889	19823890	rs9465539	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Neuroticism	170,911 European ancestry individuals	NA	6p22.3	NR	rs9465539-A	0.177	2E-6		0.021537917	[0.013-0.03] unit increase	Affymetrix [up to 6544775] (imputed)	N
736	chr6	19827277	19827278	rs7756998	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	6p22.3		rs7756998-C	NR	5E-6		1.5797	[0.92-2.24] unit increase	Illumina [NR] (imputed)	N
736	chr6	19830881	19830882	rs7757706	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	6p22.3		rs7757706-G	0.26	2E-8		5.6	z score increase	Affymetrix [9061022] (imputed)	N
736	chr6	19831019	19831020	rs75223147	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p22.3	RP1-167F1.2	rs75223147-G	NR	2E-12		0.0700704	[0.051-0.09] unit increase	Affymetrix [321114] (imputed)	N
736	chr6	19831019	19831020	rs75223147	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.3	RP1-167F1.2	rs75223147-G	NR	2E-20		0.0910257	[0.072-0.11] unit increase	Affymetrix [321016] (imputed)	N
736	chr6	19831019	19831020	rs75223147	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p22.3	RP1-167F1.2	rs75223147-G	NR	4E-12		0.0730939	[0.052-0.094] unit increase	Affymetrix [323123] (imputed)	N
736	chr6	19835630	19835631	rs114605388	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	6p22.3	NR	rs114605388-?	NR	2E-8				Illumina [7760689] (imputed)	N
736	chr6	19836014	19836015	rs6919858	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	6p22.3	NR	rs6919858-A	0.463746	6E-9		0.0178521	[0.012-0.024] unit increase	NR [19129689] (imputed)	N
736	chr6	19839414	19839415	rs41271299	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	6p22.3		rs41271299-T	NR	1E-139		0.0936	[0.086-0.101] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
736	chr6	19839414	19839415	rs41271299	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p22.3	ID4	rs41271299-T	NR	6E-25		0.0663592	[0.054-0.079] unit increase	Affymetrix [321114] (imputed)	N
736	chr6	19839414	19839415	rs41271299	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6p22.3	ID4	rs41271299-T	NR	4E-17		0.0583756	[0.045-0.072] unit increase	Affymetrix [321114] (imputed)	N
736	chr6	19839414	19839415	rs41271299	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.3	ID4	rs41271299-T	NR	2E-39		0.0837249	[0.071-0.096] unit increase	Affymetrix [321016] (imputed)	N
736	chr6	19839414	19839415	rs41271299	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p22.3	ID4	rs41271299-T	NR	1E-21		0.0658543	[0.052-0.079] unit increase	Affymetrix [323123] (imputed)	N
736	chr6	19839414	19839415	rs41271299	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	6p22.3	ID4	rs41271299-T	0.0513	3E-47		0.0616	[0.053-0.07] unit increase	Affymetrix [18391927] (imputed)	N
736	chr6	19839414	19839415	rs41271299	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6p22.3	NR	rs41271299-?	NR	3E-41				Affymetrix [~ 8270000] (imputed)	N
736	chr6	19839414	19839415	rs41271299	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	6p22.3	ID4	rs41271299-T	0.0491753	4E-20		0.04667	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
736	chr6	19839414	19839415	rs41271299	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	6p22.3	ID4	rs41271299-T	0.0491753	1E-38	(females)	0.08998	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
736	chr6	19839414	19839415	rs41271299	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	6p22.3	ID4	rs41271299-T	0.0491753	7E-29	(females)	0.07714	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
736	chr6	19839414	19839415	rs41271299	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	6p22.3	ID4	rs41271299-T	0.0491753	2E-15		0.04062	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
736	chr6	19839414	19839415	rs41271299	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	6p22.3	ID4	rs41271299-T	0.0491753	6E-8	(females)	0.0388	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
736	chr6	19839414	19839415	rs41271299	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6p22.3		rs41271299-?	NR	3E-236				NR [~ 8900000] (imputed)	N
736	chr6	19839414	19839415	rs41271299	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	6p22.3	NR	rs41271299-?	NR	5E-7	(female)	0.27266	[0.17-0.38] unit increase	Affymetrix [7794483] (imputed)	N
736	chr6	19839414	19839415	rs41271299	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	6p22.3	NR	rs41271299-?	NR	2E-20		0.45984	[0.36-0.56] unit increase	Affymetrix [7794483] (imputed)	N
736	chr6	19839414	19839415	rs41271299	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	6p22.3	NR	rs41271299-?	NR	2E-15	(male)	0.6235	[0.47-0.78] unit increase	Affymetrix [7794483] (imputed)	N
736	chr6	19839414	19839415	rs41271299	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Anthropometric traits (multi-trait analysis)	4,988 Spanish ancestry individuals	336,107 British ancestry individuals	6p22.3	ID4, AL022068.1	rs41271299-?		4E-78				Illumina [9499600] (imputed)	N
736	chr6	19839414	19839415	rs41271299	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Anthropometric traits	4,988 Spanish ancestry individuals	336,107 British ancestry individuals	6p22.3	ID4, AL022068.1	rs41271299-T	0.052	1E-129	(height)	0.09443	[0.087-0.102] unit increase	Illumina [9499600] (imputed)	N
736	chr6	19839414	19839415	rs41271299	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p22.3	ID4	rs41271299-T	0.0536	4E-17		0.1322	[0.1-0.16] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
736	chr6	19839778	19839779	rs8214	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.3	ID4	rs8214-T	NR	4E-12		0.0239119	[0.017-0.031] unit increase	Affymetrix [321016] (imputed)	N
736	chr6	19840952	19840954	rs139901282	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p22.3	ID4	rs139901282-CTT	0.7468	6E-12		0.0505	[0.036-0.065] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
736	chr6	19841492	19841493	rs1047014	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	6p22.3	ID4	rs1047014-T	0.75	2E-13		0.032	[NR] unit decrease	Affymetrix, Illumina [2834208] (imputed)	N
736	chr6	19842660	19842661	rs9350191	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	6p22.3	ID4	rs9350191-T	0.85	5E-14		1.12	[1.09-1.15]	Affymetrix, Illumina [6224355] (imputed)	N
736	chr6	19842660	19842661	rs9350191	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	6p22.3		rs9350191-?	NR	1E-10				NR [~ 8900000] (imputed)	N
736	chr6	19843766	19843767	rs6905736	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p22.3	NR	rs6905736-C	0.15	1E-7		0.88	[0.84-0.92]	Affymetrix [9886854] (imputed)	N
736	chr6	19843766	19843767	rs6905736	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p22.3	NR	rs6905736-C	0.15	3E-11			[NR]	Affymetrix [9886854] (imputed)	N
736	chr6	19843766	19843767	rs6905736	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p22.3	NR	rs6905736-C	0.15	4E-13		0.88	[0.85-0.91]	Affymetrix [9886854] (imputed)	N
736	chr6	19843766	19843767	rs6905736	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p22.3	NR	rs6905736-C	0.15	3E-12			[NR]	Affymetrix [9886854] (imputed)	N
736	chr6	19843766	19843767	rs6905736	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in non-current smokers	16,488 European ancestry cases, 169,688 European ancestry controls	NA	6p22.3	NR	rs6905736-C	0.15	6E-13		0.88	[0.85-0.91]	Affymetrix [9886854] (imputed)	N
736	chr6	19843766	19843767	rs6905736	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in never smokers	8,631 European ancestry cases, 120,544 European ancestry controls	NA	6p22.3	NR	rs6905736-C	0.15	2E-7		0.88	[0.84-0.92]	Affymetrix [9886854] (imputed)	N
736	chr6	19843766	19843767	rs6905736	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in ever smokers	12,446 European ancestry cases, 59,145 European ancestry controls	NA	6p22.3	NR	rs6905736-C	0.15	7E-6		0.91	[0.87-0.95]	Affymetrix [9886854] (imputed)	N
736	chr6	19843766	19843767	rs6905736	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p22.3	NR	rs6905736-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
736	chr6	19843766	19843767	rs6905736	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	6p22.3		rs6905736-?	NR	9E-9				NR [~ 8900000] (imputed)	N
736	chr6	19844383	19844384	rs142599545	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.3	ID4	rs142599545-G	NR	4E-17		0.0948226	[0.073-0.117] unit increase	Affymetrix [321016] (imputed)	N
736	chr6	19844532	19844533	rs62404182	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6p22.3	NR	rs62404182-?	NR	4E-10				Affymetrix [~ 8270000] (imputed)	N
736	chr6	19848544	19848545	rs11754400	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p22.3	NR	rs11754400-G	0.08885	2E-8	(HSPA6)	0.01145	NR unit increase	Illumina [1671387] (imputed)	N
736	chr6	19859653	19859654	rs6923535	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first birth	542,901 European ancestry individuals	NA	6p22.3	ID4	rs6923535-A	0.4443	2E-8		0.052	[0.034-0.07] unit decrease	NR [9744772] (imputed)	N
736	chr6	19866519	19866520	rs75833698	34311721	Alotaibi RN	2021-07-26	BMC Oral Health	Genome-Wide Association Study (GWAS) of dental caries in diverse populations.	Primary dental caries (decayed and filled teeth)	1,116 children	NA			rs75833698-?	NR	5E-8		2.17	unit decrease	Illumina [8859951] (imputed)	N
736	chr6	19914493	19914494	rs4052756	30093612	O'Mara TA	2018-08-09	Nat Commun	Identification of nine new susceptibility loci for endometrial cancer.	Endometrial cancer (Non-endometrioid histology)	1,230 European ancestry cases, 35,447 European ancestry controls	NA	6p22.3	MBOAT1	rs4052756-T	0.560757	5E-7		1.27	[1.15-1.39]	Affymetrix, Illumina [~ 11700000] (imputed)	N
736	chr6	19914495	19914496	rs4052755	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	6p22.3	NR	rs4052755-T	0.29220100000000004	1E-11		0.00597476	[0.0042-0.0078] unit increase	Affymetrix [16582909] (imputed)	N
736	chr6	19914495	19914496	rs4052755	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	6p22.3	NR	rs4052755-T	0.29220100000000004	9E-9		0.00581918	[0.0038-0.0078] unit increase	Affymetrix [16582965] (imputed)	N
736	chr6	19919985	19919986	rs1202309	31097437	Plotnikov D	2019-05-16	Br J Ophthalmol	Association between birth weight and refractive error in adulthood: a Mendelian randomisation study.	Birth weight	188,039 European ancestry individuals	NA	6p22.3	NR	rs1202309-A	0.3	1E-10		0.023	[0.015-0.031] z score decrease	Affymetrix [up to 10400000] (imputed)	N
737	chr6	19969637	19969638	rs16883019	20339536	Barber MJ	2010-03-22	PLoS One	Genome-wide association of lipid-lowering response to statins in combined study populations.	Response to statin therapy	3,928 European ancestry individuals	NA	6p22.3	ID4, LOC729105, MBOAT1	rs16883019-C	0.04	7E-7	(Triglyceride, sum)			Illumina [~ 2500000] (imputed)	N
737	chr6	19972601	19972602	rs1931788	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	6p22.3	RP1-130G2.1	rs1931788-G	NR	3E-9		0.0214086	[0.014-0.028] unit increase	Affymetrix [323858] (imputed)	N
737	chr6	19982209	19982210	rs545152330	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	6p22.3	RP1-130G2.1	rs545152330-A	0.0033	6E-6		2.3122	[1.31-3.32] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
737	chr6	19996807	19996808	rs9350204	27327535	Laville V	2016-06-21	Pigment Cell Melanoma Res	A genome-wide association study in Caucasian women suggests the involvement of HLA genes in the severity of facial solar lentigines.	Severity of facial solar lentigines	502 French ancestry individuals		6p22.3	intergenic	rs9350204-C	0.154	2E-6				Illumina [795063]	N
737	chr6	20015204	20015205	rs11753077	25199915	Broer L	2014-09-08	J Gerontol A Biol Sci Med Sci	GWAS of longevity in CHARGE consortium confirms APOE and FOXO3 candidacy.	Longevity (90 years and older)	6,036 European ancestry cases, 3,757 European ancestry controls	NA	6p22.3	MBOAT1	rs11753077-T	0.64	8E-6		1.17	1.09-1.26	Affymetrix, Illumina [2500000] (imputed)	N
737	chr6	20030604	20030605	rs181783266	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	6p22.3	Intergenic	rs181783266-T	0.988	9E-7	(AA)	0.207	NR unit increase	Illumina [NR] (imputed)	N
738	chr6	20064547	20064548	rs693006	27629369	Gao J	2016-09-15	Neuropsychopharmacology	Genome-Wide Association Study of Loneliness Demonstrates a Role for Common Variation.	Loneliness (multivariate analysis)	8,490 European ancestry individuals, 1,228 African American individuals, 867 Hispanic American individuals, 175 individuals	NA	6p22.3	ID4, MBOAT1	rs693006-?	NR	2E-6	(EA)			Illumina [7205781] (imputed)	N
738	chr6	20100221	20100222	rs2235142	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	6p22.3	NR	rs2235142-?	NR	4E-6		0.448438	[0.26-0.64] unit increase	Affymetrix [656292] (imputed)	N
738	chr6	20105276	20105277	rs1889399	26242244	Ma Y	2015-08-05	Sci Rep	Association of chromosome 5q21.3 polymorphisms with the exploratory eye movement dysfunction in schizophrenia.	Exploratory eye movement dysfunction in schizophrenia (responsive search score)	128 Han Chinese ancestry cases	NA	6p22.3	NR	rs1889399-?	NR	7E-7		3.488	[2.18-4.8] unit decrease	Illumina [498648]	N
738	chr6	20109591	20109592	rs2457335	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6p22.3	MBOAT1	rs2457335-G	0.191	2E-6	(Head circumference )	0.04	[NR] cm increase	Illumina [899892]	N
738	chr6	20110380	20110381	rs2457333	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6p22.3		rs2457333-?	NR	3E-8				NR [~ 8900000] (imputed)	N
738	chr6	20142871	20142872	rs2479091	33590662	Heilbronner U	2021-02-15	Am J Med Genet B Neuropsychiatr Genet	"The Heidelberg Five" personality dimensions: Genome-wide associations, polygenic risk for neuroticism, and psychopathology 20 years after assessment.	Lack of behavioral control	3,268 European ancestry individuals	NA	6p22.3	NR	rs2479091-C	0.7846	6E-6		0.137	[0.078-0.196] unit decrease	Illumina [8348463] (imputed)	N
738	chr6	20156173	20156174	rs1202199	18821565	Lasky-Su J	2008-12-05	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association scan of quantitative traits for attention deficit hyperactivity disorder identifies novel associations and confirms candidate gene associations.	Hyperactive-impulsive symptoms	930 European ancestry trios	NA	6p22.3	intergenic	rs1202199-?	NR	9E-6	(count)			Perlegen [429981]	N
738	chr6	20177221	20177222	rs10946364	28030426	Mahmoudpour SH	2017-03-27	Pharmacogenet Genomics	Meta-analysis of genome-wide association studies on the intolerance of angiotensin-converting enzyme inhibitors.	Angiotensin-converting enzyme inhibitor intolerance	972 European ancestry intolerant individuals, 4,189 European ancestry tolerant individuals	NA	6p22.3	MBOAT1	rs10946364-T	0.399228	4E-8		1.347209	[1.211477-1.498147]	Affymetrix, Illumina [NR] (imputed)	N
738	chr6	20177917	20177918	rs111747604	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	6p22.3	NR	rs111747604-C	NR	9E-6	(LME model)	0.85339	[0.48-1.23] unit increase	NR [NR] (imputed)	N
738	chr6	20185050	20185051	rs555017	24489884	Mick E	2014-01-01	PLoS One	Genome-wide association study of proneness to anger.	Anger	8,747 European ancestry individuals	NA	6p22.3	MBOAT1	rs555017-T	0.369	4E-6	(Reaction)	0.15	[NR] unit increase	Affymetrix [677643]	N
739	chr6	20196933	20196934	rs4712462	33567813	Mateos MK	2021-02-11	Haematologica	Methotrexate-related central neurotoxicity: clinical characteristics, risk factors and genome-wide association study in children treated for acute lymphoblastic leukemia.	Methotrexate-related central neurotoxicity in children treated for acute lymphoblastic leukemia	48 European ancestry cases, 537 European ancestry controls	NA	6p22.3		rs4712462-G	NR	3E-7		0.26	[0.16-0.45]	Illumina [10838245] (imputed)	N
739	chr6	20205909	20205910	rs9358311	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	6p22.3		rs9358311-G	0.9989	3E-6		0.47824	[0.28-0.68] unit increase	Affymetrix [15580782] (imputed)	N
739	chr6	20214617	20214618	rs576252185	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	6p22.3		rs576252185-A	NR	6E-10		0.0927	[0.063-0.122] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
739	chr6	20218010	20218011	rs35542031	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6p22.3		rs35542031-?	NR	3E-8				NR [~ 8900000] (imputed)	N
739	chr6	20228225	20228226	rs78144291	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p22.3	MBOAT1	rs78144291-T	0.976897	4E-8	(176 ms)	0.102853	[0.065-0.14] unit decrease	Affymetrix [10000000] (imputed)	N
739	chr6	20228225	20228226	rs78144291	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p22.3	RP11-239H6.2	rs78144291-C	0.019578	2E-9		0.04899487	[0.033-0.065] unit increase	Affymetrix [93095623] (imputed)	N
739	chr6	20228225	20228226	rs78144291	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	6p22.3	NR	rs78144291-C	0.0205	2E-10		0.044914	[0.031-0.059] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
739	chr6	20244879	20244880	rs534615261	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		AL158198.1	rs534615261-?	NR	1E-10		2.17652	[NR] unit increase	Affymetrix [NR] (imputed)	N
739	chr6	20304562	20304563	rs6940493	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	6p22.3	MBOAT1	rs6940493-A	0.314517	5E-9		0.0120893	[0.008-0.0161] unit decrease	Affymetrix [NR] (imputed)	N
740	chr6	20366579	20366580	rs16901546	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6p22.3	MBOAT1	rs16901546-?	NR	3E-6	(TAG 58:12)	0.26298735	[0.15-0.37] unit decrease	Affymetrix [at least 2500000] (imputed)	N
740	chr6	20382599	20382600	rs1570155	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6p22.3	E2F3	rs1570155-A	0.391	4E-6	(Calorimeter activity )	0.04	[NR] counts/d increase	Illumina [899892]	N
740	chr6	20396148	20396149	rs79168752	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	6p22.3	E2F3	rs79168752-T	NR	8E-9		0.0278196	[0.018-0.037] unit decrease	Affymetrix [321788] (imputed)	N
740	chr6	20396148	20396149	rs79168752	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	6p22.3	NR	rs79168752-T	NR	6E-10		0.0241	[0.016-0.032] unit decrease	Affymetrix [9000000] (imputed)	N
740	chr6	20396148	20396149	rs79168752	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	6p22.3	NR	rs79168752-T	NR	4E-10		0.0244	[0.017-0.032] unit increase	Affymetrix [9000000] (imputed)	N
740	chr6	20404419	20404420	rs73382439	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	6p22.3		rs73382439-C	NR	2E-13		0.0168	[0.012-0.021] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
740	chr6	20404419	20404420	rs73382439	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p22.3	E2F3	rs73382439-T	NR	2E-8		0.0210407	[0.014-0.028] unit increase	Affymetrix [319769] (imputed)	N
740	chr6	20404419	20404420	rs73382439	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p22.3	E2F3	rs73382439-T	NR	4E-8		0.0205756	[0.013-0.028] unit increase	Affymetrix [319769] (imputed)	N
740	chr6	20404419	20404420	rs73382439	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	6p22.3	E2F3	rs73382439-T	NR	7E-13		0.0279412	[0.02-0.036] unit decrease	Affymetrix [321788] (imputed)	N
740	chr6	20404419	20404420	rs73382439	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	6p22.3	E2F3	rs73382439-T	0.172201	8E-13		0.00379152	[0.0028-0.0048] unit decrease	Affymetrix [13995440] (imputed)	N
740	chr6	20404419	20404420	rs73382439	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	6p22.3	E2F3	rs73382439-C	0.83	7E-10		6.16	z-score increase	Affymetrix [4312306] (imputed)	N
740	chr6	20404419	20404420	rs73382439	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	6p22.3	NR	rs73382439-C	NR	2E-10		0.0202	[0.014-0.026] unit increase	Affymetrix [9000000] (imputed)	N
740	chr6	20404419	20404420	rs73382439	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	6p22.3	NR	rs73382439-C	NR	3E-9		0.0187	[0.012-0.025] unit increase	Affymetrix [9000000] (imputed)	N
740	chr6	20404419	20404420	rs73382439	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in non-diabetics	152,624 European ancestry individuals, 36,369 African American individuals	NA	6p22.3	E2F3	rs73382439-T	0.169	1E-8		0.404	[0.26-0.54] unit decrease	Affymetrix [NR] (imputed)	N
740	chr6	20405018	20405019	rs6456349	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	6p22.3		rs6456349-A	NR	3E-9		0.013	[0.0087-0.0173] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
740	chr6	20405538	20405539	rs6456350	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	265,204 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p22.3	NR	rs6456350-A	NR	1E-8		0.019	unit decrease	Affymetrix [at least 7091467] (imputed)	N
740	chr6	20428431	20428432	rs9465741	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	6p22.3		rs9465741-A	NR	2E-14		0.0129	[0.0096-0.0162] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
740	chr6	20428431	20428432	rs9465741	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	6p22.3	NR	rs9465741-A	NR	4E-10		0.0151	[0.01-0.02] unit decrease	Affymetrix [9000000] (imputed)	N
741	chr6	20462137	20462138	rs6938550	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large VLDL	115,082 European ancestry individuals	NA	6p22.3		rs6938550-G	0.0858536	2E-8		0.0397354	[0.026-0.054] unit increase	NR [11722792] (imputed)	N
741	chr6	20462137	20462138	rs6938550	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small VLDL	115,082 European ancestry individuals	NA	6p22.3		rs6938550-G	0.0858536	5E-8		0.0388362	[0.025-0.053] unit increase	NR [11722792] (imputed)	N
741	chr6	20462137	20462138	rs6938550	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small LDL	115,082 European ancestry individuals	NA	6p22.3		rs6938550-G	0.0858536	5E-8		0.0388982	[0.025-0.053] unit increase	NR [11722792] (imputed)	N
741	chr6	20462137	20462138	rs6938550	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in VLDL	115,082 European ancestry individuals	NA	6p22.3		rs6938550-G	0.0858536	4E-8		0.0388208	[0.025-0.053] unit increase	NR [11722792] (imputed)	N
741	chr6	20462137	20462138	rs6938550	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total triglycerides levels	115,082 European ancestry individuals	NA	6p22.3		rs6938550-G	0.0858536	2E-8		0.0400301	[0.026-0.054] unit increase	NR [11722792] (imputed)	N
741	chr6	20462137	20462138	rs6938550	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	6p22.3		rs6938550-G	0.0858538	2E-8		0.0399771	[0.026-0.054] unit decrease	NR [11722792] (imputed)	N
741	chr6	20462137	20462138	rs6938550	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Monounsaturated fatty acid levels	115,006 European ancestry individuals	NA	6p22.3		rs6938550-G	0.0858538	1E-8		0.0416299	[0.027-0.056] unit increase	NR [11722792] (imputed)	N
741	chr6	20462137	20462138	rs6938550	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	6p22.3		rs6938550-G	0.0858617	3E-8		0.0388624	[0.025-0.053] unit decrease	NR [11722792] (imputed)	N
741	chr6	20462137	20462138	rs6938550	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	6p22.3		rs6938550-G	0.0858617	3E-8		0.038912	[0.025-0.053] unit decrease	NR [11722792] (imputed)	N
741	chr6	20481677	20481678	rs4134938	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	6p22.3		rs4134938-C	NR	4E-8		0.0153	[0.0098-0.0208] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
741	chr6	20482334	20482335	rs3806114	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		6p22.3	E2F3	rs3806114-G	0.331743	2E-9		0.00878865	[0.0059-0.0117] unit increase	Affymetrix [12370749]	N
741	chr6	20482334	20482335	rs3806114	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	6p22.3	NA	rs3806114-A	0.6916	1E-11		0.012	[0.0085-0.0155] unit decrease	NR [~ 27400000] (imputed)	N
741	chr6	20482334	20482335	rs3806114	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	6p22.3	NA	rs3806114-A	0.6916	1E-11		0.012	[0.0085-0.0155] unit decrease	NR [~ 27400000] (imputed)	N
741	chr6	20483406	20483407	rs4134943	33128006	Timmins IR	2020-10-30	Commun Biol	Genome-wide association study of self-reported walking pace suggests beneficial effects of brisk walking on health and survival.	Walking pace	450,967 European ancestry individuals	NA	6p22.3	E2F3	rs4134943-C	NR	5E-9		0.0091338	[0.0061-0.0122] unit decrease	Affymetrix [10061374] (imputed)	N
741	chr6	20486797	20486798	rs4134963	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	6p22.3	E2F3	rs4134963-C	0.810123	2E-13		0.0188136	[0.014-0.024] unit increase	Affymetrix [NR] (imputed)	N
741	chr6	20488896	20488897	rs1322842	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Triglycerides	429,011 European ancestry individuals	NA	6p22.3		rs1322842-A	0.39	3E-7		0.01	mmol/L increase	NR [NR] (imputed)	N
741	chr6	20488896	20488897	rs1322842	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	6p22.3		rs1322842-A	0.39	4E-10				NR [NR] (imputed)	N
741	chr6	20488896	20488897	rs1322842	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	High density lipoprotein cholesterol levels	392,965 European ancestry individuals	NA	6p22.3		rs1322842-A	0.39	3E-6		0.009	mmol/L decrease	NR [NR] (imputed)	N
741	chr6	20488896	20488897	rs1322842	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	6p22.3		rs1322842-A	0.39	4E-15		0.012	% increase	NR [NR] (imputed)	N
741	chr6	20488896	20488897	rs1322842	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6p22.3	NR	rs1322842-?	NR	5E-12				Affymetrix [~ 8270000] (imputed)	N
741	chr6	20488896	20488897	rs1322842	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	6p22.3		rs1322842-?	NR	2E-11				NR [~ 8900000] (imputed)	N
741	chr6	20504850	20504851	rs7775526	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	6p22.3		rs7775526-?	NR	4E-8				NR [~ 8900000] (imputed)	N
741	chr6	20506814	20506815	rs12206516	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	6p22.3	intergenic	rs12206516-A	0.8218	2E-8		0.0154	[0.0099-0.0209] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
741	chr6	20527261	20527262	rs4516938	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Clostridium tertium abundance in stool	5,959 Finnish ancestry individuals	NA	6p22.3		rs4516938-G	0.43363	4E-8		0.0412088	[0.027-0.056] unit increase	Illumina [7980478] (imputed)	N
741	chr6	20534514	20534514	rs745771286	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	6p22.3	CDKAL1	rs745771286-G	0.2978	3E-11		0.0139	[0.0098-0.018] unit increase	Affymetrix [18391927] (imputed)	N
741	chr6	20550065	20550066	rs78287738	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	6p22.3	CDKAL1	rs78287738-?	NR	4E-11		1.0570824	NR	Affymetrix [9154080] (imputed)	N
741	chr6	20560434	20560435	rs17584626	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	6p22.3	NR	rs17584626-A	0.6887	2E-10		0.0123	[0.0086-0.016] unit increase	NR [~ 27400000] (imputed)	N
741	chr6	20567540	20567541	rs9460521	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6p22.3	CDKAL1	rs9460521-A	0.01	8E-6	(Weight z-score )	0.03	[NR] SD increase	Illumina [899892]	N
742	chr6	20581827	20581828	rs7744833	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	6p22.3	NA	rs7744833-A	0.6823	7E-11		0.0125	[0.0088-0.0162] unit increase	NR [~ 27400000] (imputed)	N
742	chr6	20585472	20585473	rs9368207	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	6p22.3	NR	rs9368207-C	0.240728	1E-10		0.014463	[0.01-0.019] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
742	chr6	20585472	20585473	rs9368207	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	6p22.3		rs9368207-?	NR	5E-9				NR [~ 8900000] (imputed)	N
742	chr6	20589726	20589727	rs6908042	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6p22.3	NR	rs6908042-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
742	chr6	20589726	20589727	rs6908042	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	6p22.3		rs6908042-?	NR	2E-8				NR [~ 8900000] (imputed)	N
742	chr6	20589726	20589727	rs6908042	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	6p22.3	NR	rs6908042-A	0.68	3E-9		0.011	[0.0073-0.0147] unit increase	Affymetrix [2446094] (imputed)	N
742	chr6	20589726	20589727	rs6908042	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	6p22.3	NR	rs6908042-A	0.68	5E-8				Affymetrix [2446094] (imputed)	N
742	chr6	20592983	20592984	rs62400067	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	6p22.3	CDKAL1	rs62400067-T	NR	4E-7	(between families)	5.092	unit increase	Affymetrix [up to 15107142] (imputed)	N
742	chr6	20621237	20621238	rs2223621	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	6p22.3		rs2223621-T	NR	2E-8		1.03	[1.02-1.05]	Affymetrix, Illumina [NR] (imputed)	N
742	chr6	20621237	20621238	rs2223621	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p22.3	CDKAL1	rs2223621-T	0.38	3E-10	(EA)	1.04	[1.02-1.06] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
742	chr6	20624381	20624382	rs714830	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	6p22.3	CDKAL1	rs714830-?	NR	5E-9	(subset analysis)			Illumina [130052]	N
742	chr6	20627776	20627777	rs2223620	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	6p22.3		rs2223620-?	NR	1E-22				NR [~ 8900000] (imputed)	N
742	chr6	20632765	20632766	rs17224527	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	6p22.3		rs17224527-?	NR	9E-10				NR [~ 8900000] (imputed)	N
742	chr6	20632765	20632766	rs17224527	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	6p22.3	NR	rs17224527-A	0.32745	4E-16		0.0266453	[0.02-0.033] unit decrease	NR [19129689] (imputed)	N
742	chr6	20636483	20636484	rs78614455	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.3	NR	rs78614455-?	NR	1E-6		4.873	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
742	chr6	20641335	20641336	rs9348440	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	6p22.3	NR	rs9348440-T	0.127225	2E-15		0.021442	[0.016-0.027] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
742	chr6	20641335	20641336	rs9348440	23575436	Go MJ	2013-04-11	J Hum Genet	New susceptibility loci in MYL2, C12orf51 and OAS1 associated with 1-h plasma glucose as predisposing risk factors for type 2 diabetes in the Korean population.	Glycemic traits	7,696 Korean ancestry individuals	6,536 Korean ancestry individuals	6p22.3	CDKAL1	rs9348440-A		3E-19	(1-hPG)	0.246	[0.19-0.30] mmol-1 increase	Affymetrix [357789]	N
742	chr6	20643726	20643727	rs2328530	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	6p22.3	CDKAL1	rs2328530-?	NR	1E-17	(subset analysis)			Illumina [130052]	N
742	chr6	20652716	20652717	rs9295474	21490949	Sim X	2011-04-07	PLoS Genet	Transferability of type 2 diabetes implicated loci in multi-ethnic cohorts from Southeast Asia.	Type 2 diabetes	2,010 Chinese ancestry cases, 1,945 Chinese ancestry controls, 794 Malay ancestry cases, 1,240 Malay ancestry controls, 977 Asian Indian ancestry cases, 1,169 Asian Indian ancestry controls	NA	6p22.3	CDKAL1	rs9295474-G	0.36	9E-6	(Chinese+Malay+Indian)	1.16	[1.09-1.24]	Illumina [~ 2000000] (imputed)	N
742	chr6	20652764	20652765	rs9295475	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p22.3	NR	rs9295475-G	0.220404	4E-18				Affymetrix, Illumina [24246363] (imputed)	N
742	chr6	20652764	20652765	rs9295475	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p22.3	NR	rs9295475-G	0.223714	9E-11				Affymetrix, Illumina [20825802] (imputed)	N
742	chr6	20657344	20657345	rs2328546	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	6p22.3	NR	rs2328546-?	NR	1E-13	(EA)			Affymetrix, Illumina [~ 9000000] (imputed)	N
742	chr6	20657563	20657564	rs4712523	19734900	Rung J	2009-09-06	Nat Genet	Genetic variant near IRS1 is associated with type 2 diabetes, insulin resistance and hyperinsulinemia.	Type 2 diabetes	679 European ancestry cases, 697 European ancestry controls	5,579 European ancestry cases, 7,096 European ancestry controls	6p22.3	CDKAL1	rs4712523-G	0.32	2E-12		1.2	[1.14-1.26]	Illumina [392365]	N
742	chr6	20657563	20657564	rs4712523	19401414	Takeuchi F	2009-04-29	Diabetes	Confirmation of multiple risk Loci and genetic impacts by a genome-wide association study of type 2 diabetes in the Japanese population.	Type 2 diabetes	519 Japanese ancestry cases, 503 Japanese ancestry controls	5,110 Japanese ancestry cases, 6,867 Japanese ancestry controls	6p22.3	CDKAL1	rs4712523-G	0.41	7E-20		1.27	[1.21-1.33]	Illumina [482625]	N
742	chr6	20657864	20657865	rs4712524	18711366	Unoki H	2008-08-17	Nat Genet	SNPs in KCNQ1 are associated with susceptibility to type 2 diabetes in East Asian and European populations.	Type 2 diabetes	194 Japanese ancestry cases, 1,558 Japanese ancestry controls	5,324 East Asian ancestry cases, 7,037 East Asian ancestry controls, 4,085 European ancestry cases, 5,302 European ancestry controls	6p22.3	CDKAL1	rs4712524-G	0.42	3E-10		1.22	[1.15-1.31]	Affymetrix [207097]	N
742	chr6	20661033	20661034	rs10946398	19056611	Timpson NJ	2008-12-03	Diabetes	Adiposity-related heterogeneity in patterns of type 2 diabetes susceptibility observed in genome-wide association data.	Type 2 diabetes	958 European ancestry obese cases, 955 European ancestry non-obese cases, 2,938 European ancestry controls	Up to 3,757 European ancestry cases, up to 5,346 European ancestry controls	6p22.3	CDKAL	rs10946398-?	NR	7E-7	(non-obese)	1.18	[1.11-1.26]	Affymetrix [393453]	N
742	chr6	20661033	20661034	rs10946398	17463249	Zeggini E	2007-04-26	Science	Replication of genome-wide association signals in UK samples reveals risk loci for type 2 diabetes.	Type 2 diabetes	1,924 European ancestry cases, 2,938 European ancestry controls	3,757 European ancestry cases, 5,346 European ancestry controls	6p22.3	CDKAL1	rs10946398-C	0.32	1E-8		1.16	[1.10-1.22]	Affymetrix [393453]	N
742	chr6	20661249	20661250	rs7754840	31902109	Li D	2020-01-04	Genes Genomics	Progressive effects of single-nucleotide polymorphisms on 16 phenotypic traits based on longitudinal data.	Hematological and biochemical traits	up to 6,843 Korean ancestry individuals	NA	6p22.3	CDKAL1	rs7754840-C	0.478	6E-9	(fasting blood glucose)	0.01488	NR unit increase	Affymetrix [305158]	N
742	chr6	20661249	20661250	rs7754840	31902109	Li D	2020-01-04	Genes Genomics	Progressive effects of single-nucleotide polymorphisms on 16 phenotypic traits based on longitudinal data.	Hematological and biochemical traits	up to 6,843 Korean ancestry individuals	NA	6p22.3	CDKAL1	rs7754840-C	0.478	5E-11	(HbA1c)	0.01254	NR unit increase	Affymetrix [305158]	N
742	chr6	20661249	20661250	rs7754840	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	6p22.3	CDKAL1	rs7754840-C	0.3181	2E-56		0.127	[0.11-0.14] unit increase	Affymetrix, Illumina [NR] (imputed)	N
742	chr6	20661249	20661250	rs7754840	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	6p22.3	CDKAL1	rs7754840-C	0.3181	2E-31	(EA)	0.1226	[0.1-0.14] unit increase	Affymetrix, Illumina [NR] (imputed)	N
742	chr6	20661249	20661250	rs7754840	23945395	Hara K	2013-08-14	Hum Mol Genet	Genome-wide association study identifies three novel loci for type 2 diabetes.	Type 2 diabetes	5,976 Japanese ancestry cases, 20,829 Japanese ancestry controls	24,416 East Asian ancestry cases, 13,985 East Asian ancestry controls	6p22.3	CDKAL1	rs7754840-C	0.42	2E-13		1.18	[1.13-1.23]	Illumina [6209637] (imputed)	N
742	chr6	20661249	20661250	rs7754840	22961080	Li H	2012-09-06	Diabetes	A genome-wide association study identifies GRK5 and RASGRP1 as type 2 diabetes loci in Chinese Hans.	Type 2 diabetes	1,839 Han Chinese ancestry cases, 1,873 Han Chinese ancestry controls	15,979 East Asian ancestry cases, 19,360 East Asian ancestry controls, 794 Malay ancestry cases, 1,240 Malay ancestry controls, 159 Filipino ancestry cases, 1,624 Filipino ancestry controls	6p22.3	CDKAL1	rs7754840-C	0.411	7E-10		1.35	[1.23-1.48]	Illumina [2234194] (imputed)	N
742	chr6	20661249	20661250	rs7754840	22233651	Kwak SH	2012-01-10	Diabetes	A genome-wide association study of gestational diabetes mellitus in Korean women.	Diabetes (gestational)	468 Korean ancestry cases, 1,242 Korean ancestry controls	931 Korean ancestry cases, 783 Korean ancestry controls	6p22.3	CDKAL1	rs7754840-C	0.445	7E-16		1.518	[1.372-1.680]	Affymetrix [2188613] (imputed)	N
742	chr6	20661249	20661250	rs7754840	17463248	Scott LJ	2007-04-26	Science	A genome-wide association study of type 2 diabetes in Finns detects multiple susceptibility variants.	Type 2 diabetes	1,161 European ancestry cases, 1,174 European ancestry controls	1,215 European ancestry cases, 1,258 European ancestry controls	6p22.3	CDKAL1	rs7754840-C	0.36	4E-11	(DGI+FUSION+WTCCC)	1.12	[1.08-1.16]	Illumina [315635]	N
742	chr6	20661249	20661250	rs7754840	17463246	Saxena R	2007-04-26	Science	Genome-wide association analysis identifies loci for type 2 diabetes and triglyceride levels.	Type 2 diabetes	1,464 European ancestry cases, 1,467 European ancestry controls	5,065 European ancestry cases, 5,785 European ancestry controls, at least 18,129 cases and controls.	6p22.3	CDKAL1	rs7754840-C	0.31	4E-11		1.12	[1.08-1.16]	Affymetrix [386731]	N
742	chr6	20661836	20661837	rs56676529	32002517	Julienne H	2020-01-24	NAR Genom Bioinform	JASS: command line and web interface for the joint analysis of GWAS results.	Insulin-related traits (multivariate analysis)	62,205 individuals	NA	6p22.3	CDKAL1	rs56676529-?	NR	6E-13				NR [3144808] (imputed)	N
742	chr6	20663829	20663830	rs183412314	34563919	Chiba Y	2021-09-20	J Neurol Sci	Genetic and demographic predisposing factors associated with pediatric sleepwalking in the Philadelphia Neurodevelopmental Cohort.	Sleepwalking	155 African American cases, 2,598 African American controls	NA	6p22.3		rs183412314-?	NR	6E-7		6.495		Illumina [NR] (imputed)	N
742	chr6	20665080	20665081	rs742642	24699409	Prokopenko I	2014-04-03	PLoS Genet	A central role for GRB10 in regulation of islet function in man.	Insulin levels adjusted for BMI	up to 4,409 European individuals, up to 411 Old Order Amish (founder/genetic isolate) individuals	18,535 European individuals	6p22.3	CDKAL1	rs742642-A	NR	4E-10		0.13	[0.089-0.171] unit decrease	Affymetrix, Illumina [at least 1961018] (imputed)	N
742	chr6	20665080	20665081	rs742642	24699409	Prokopenko I	2014-04-03	PLoS Genet	A central role for GRB10 in regulation of islet function in man.	Insulin levels	up to 4,483 European individuals, up to 441 Old Order Amish (founder/genetic isolate) individuals	20,792 European individuals	6p22.3	CDKAL1	rs742642-A	NR	8E-9		0.12	[0.079-0.161] unit decrease	Affymetrix, Illumina [at least 1961018] (imputed)	N
742	chr6	20665080	20665081	rs742642	24699409	Prokopenko I	2014-04-03	PLoS Genet	A central role for GRB10 in regulation of islet function in man.	Insulin disposition index	up to 4,746 European individuals, up to 412 Old Order Amish (founder/genetic isolate) individuals	20,461 European individuals	6p22.3	CDKAL1	rs742642-A	NR	3E-7		0.1	[0.061-0.139] unit decrease	Affymetrix, Illumina [at least 1961018] (imputed)	N
742	chr6	20665080	20665081	rs742642	24699409	Prokopenko I	2014-04-03	PLoS Genet	A central role for GRB10 in regulation of islet function in man.	Incremental insulin	up to 4,447 European individuals, up to 411 Old Order Amish (founder/genetic isolate) individuals	20,706 European individuals	6p22.3	CDKAL1	rs742642-A	NR	6E-8		0.12	[0.079-0.161] unit decrease	NR [at least 1961018] (imputed)	N
742	chr6	20665080	20665081	rs742642	24699409	Prokopenko I	2014-04-03	PLoS Genet	A central role for GRB10 in regulation of islet function in man.	Corrected insulin response adjusted for insulin sensitivity index	up to 4,565 European individuals, up to 413 Old Order Amish (founder/genetic isolate) individuals	20,461 European individuals	6p22.3	CDKAL1	rs742642-A	NR	1E-7		0.11	[0.069-0.151] unit decrease	Affymetrix, Illumina [at least 1961018] (imputed)	N
742	chr6	20665080	20665081	rs742642	24699409	Prokopenko I	2014-04-03	PLoS Genet	A central role for GRB10 in regulation of islet function in man.	Corrected insulin response	up to 4,961 European individuals, up to 411 Old Order Amish (founder/genetic isolate) individuals	20,722 European individuals	6p22.3	CDKAL1	rs742642-A	NR	2E-10		0.13	[0.091-0.169] unit decrease	Affymetrix, Illumina [at least 1961018] (imputed)	N
742	chr6	20665945	20665946	rs7772603	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	6p22.3		rs7772603-C	NR	2E-8		0.0142	[0.0093-0.0191] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
742	chr6	20665945	20665946	rs7772603	24647736	Chen P	2014-03-19	Diabetes	Multiple nonglycemic genomic loci are newly associated with blood level of glycated hemoglobin in East Asians.	Glycated hemoglobin levels	17,290 East Asian ancestry individuals, 1,727 Malay ancestry individuals	up to 13,585 East Asian ancestry individuals	6p22.3	CDKAL1	rs7772603-C	0.42	4E-8		0.06	[0.040-0.080] unit increase	Affymetrix, Illumina [up to 2400000] (imputed)	N
742	chr6	20666054	20666055	rs7752906	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	133,336 East Asian ancestry individuals	NA	6p22.3		rs7752906-A	0.422689	2E-16		0.028666	[0.022-0.036] unit increase	Illumina [13476509] (imputed)	N
742	chr6	20667381	20667382	rs9358356	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Blood sugar levels	93,146 Japanese ancestry individuals	NA	6p22.3	CDKAL1	rs9358356-?	NR	1E-13		0.03576	[0.026-0.045] unit increase novel	Illumina [6108953] (imputed)	N
742	chr6	20673879	20673880	rs7451008	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	Systolic blood pressure	291,107 British ancestry individuals	NA	6p22.3	CDKAL1	rs7451008-C	0.26216301	2E-6		0.260027	[0.15-0.37] unit increase	Affymetrix [9463307] (imputed)	N
742	chr6	20673879	20673880	rs7451008	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	Blood glucose levels	291,107 British ancestry individuals	NA	6p22.3	CDKAL1	rs7451008-C	0.26216301	3E-14		0.00642654	[0.0048-0.0081] unit increase	Affymetrix [9463307] (imputed)	N
742	chr6	20673879	20673880	rs7451008	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	6p22.3		rs7451008-?	NR	4E-10				NR [~ 8900000] (imputed)	N
742	chr6	20674690	20674691	rs9368219	32944759	Deshmukh HA	2020-09-18	J Clin Endocrinol Metab	Genome-Wide Association Analysis of Pancreatic Beta Cell Glucose Sensitivity.	Pancreatic beta-cell glucose sensitivity	3,017 European ancestry individuals	2,689 European ancestry individuals	6p22.3	CDKAL1	rs9368219-T	NR	3E-9		5.924	NR z score decrease	Illumina [8978282] (imputed)	N
742	chr6	20675791	20675792	rs35261542	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glutamine levels	114,751 European ancestry individuals	NA	6p22.3		rs35261542-C	0.739068	1E-10		0.0302132	[0.021-0.039] unit decrease	NR [11722792] (imputed)	N
742	chr6	20675791	20675792	rs35261542	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	6p22.3		rs35261542-A	NR	4E-90		0.0449	[0.041-0.049] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
742	chr6	20675791	20675792	rs35261542	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	6p22.3	CDKAL1	rs35261542-C	0.733188	3E-45		0.040621	[0.035-0.046] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
742	chr6	20675791	20675792	rs35261542	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Hemoglobin A1c levels	42,790 Japanese ancestry individuals	NA	6p22.3	CDKAL1	rs35261542-?	NR	2E-34		0.08715	[0.073-0.101] unit increase novel	Illumina [6108953] (imputed)	N
742	chr6	20675791	20675792	rs35261542	29358691	Bonas-Guarch S	2018-01-22	Nat Commun	Re-analysis of public genetic data reveals a rare X-chromosomal variant associated with type 2 diabetes.	Type 2 diabetes	up to 12,931 European ancestry cases, up to 57,196 European ancestry controls	NA	6p22.3	CDKAL1	rs35261542-A	NR	2E-14		1.1423643		Affymetrix, Illumina [~ 13000000] (imputed)	N
742	chr6	20675791	20675792	rs35261542	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	6p22.3	CDKAL1	rs35261542-A	0.429	4E-29	(Japanese)	0.039	[0.031-0.047] unit decrease	Illumina [6108953] (imputed)	N
742	chr6	20675791	20675792	rs35261542	27680694	Horikoshi M	2016-10-13	Nature	Genome-wide associations for birth weight and correlations with adult disease.	Birth weight	133,903 European ancestry individuals, 6,635 African American individuals, 420 Turkish ancestry individuals, 365 Moroccan ancestry individuals, 395 Surinamese ancestry individuals, 840 Chinese ancestry individuals.	9,799 European ancestry individuals, 1,449 Filipino ancestry individuals.	6p22.3	CDKAL1	rs35261542-C	0.73	1E-28		0.0444	[0.037-0.052] unit increase	Affymetrix, Illumina [at least 22434434] (imputed)	N
742	chr6	20676414	20676414	rs34499031	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	6p22.3	NR	rs34499031-T	0.73516	2E-19		0.00833951	[0.0065-0.0102] unit increase	Affymetrix [16582909] (imputed)	N
742	chr6	20676414	20676414	rs34499031	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	6p22.3	NR	rs34499031-T	0.735519	1E-14		0.0105411	[0.0078-0.0133] unit increase	Affymetrix [16585854] (imputed)	N
742	chr6	20676414	20676414	rs34499031	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	6p22.3	NR	rs34499031-T	0.73516	3E-9		0.00634294	[0.0043-0.0084] unit increase	Affymetrix [16582965] (imputed)	N
742	chr6	20676414	20676414	rs34499031	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	6p22.3	NR	rs34499031-T	0.735519	7E-9		0.00884503	[0.0057-0.012] unit increase	Affymetrix [16585866] (imputed)	N
742	chr6	20678429	20678430	rs4712528	26626624	Stuart PE	2015-11-28	Am J Hum Genet	Genome-wide Association Analysis of Psoriatic Arthritis and Cutaneous Psoriasis Reveals Differences in Their Genetic Architecture.	Psoriasis vulgaris	4,007 European ancestry cases, 4,934 European ancestry controls	up to 9,075 European ancestry cases, up to European ancestry 12,726 controls	6p22.3	CDKAL1	rs4712528-C	0.7815	8E-11		1.16	NR	Illumina [up to 11532644] (imputed)	N
742	chr6	20679708	20679709	rs7756992	33385400	Patrick MT	2020-12-29	J Invest Dermatol	Causal relationship and shared genetic loci between psoriasis and type 2 diabetes through trans-disease meta-analysis.	Psoriasis or type 2 diabetes (trans-disease meta-analysis)	11,024 European ancestry psoriasis cases, 74,124 European ancestry diabetes cases, 840,342 European ancestry controls	NA	6p22.3	NR	rs7756992-G	NR	2E-20		1.11	NR	NR [8016731] (imputed)	N
742	chr6	20679708	20679709	rs7756992	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	6p22.3		rs7756992-A	0.7294	4E-17		0.20507394	[0.16-0.25] mmHg decrease	Affymetrix, Illumina [242865] (imputed)	N
742	chr6	20679708	20679709	rs7756992	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Hypertension	810,865 European ancestry individuals	354,096 European ancestry individuals	6p22.3		rs7756992-A	0.7323	1E-10		6.41266	z score decrease	Affymetrix, Illumina [239843] (imputed)	N
742	chr6	20679708	20679709	rs7756992	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	6p22.3		rs7756992-A	0.7295	6E-9		0.09017832	[0.059-0.121] mmHg decrease	Affymetrix, Illumina [242866] (imputed)	N
742	chr6	20679708	20679709	rs7756992	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	6p22.3	NR	rs7756992-G	0.2706	6E-128		0.1217	[0.11-0.13] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
742	chr6	20679708	20679709	rs7756992	31681408	Yang XL	2019-10-11	Front Genet	Three Novel Loci for Infant Head Circumference Identified by a Joint Association Analysis.	Infant head circumference (MTAG)	up to 182,902 European ancestry individuals	NA	6p22.3	NR	rs7756992-A	0.7042	2E-8		0.06780183	[0.044-0.091] z score increase	NR [1977400] (imputed)	N
742	chr6	20679708	20679709	rs7756992	31681408	Yang XL	2019-10-11	Front Genet	Three Novel Loci for Infant Head Circumference Identified by a Joint Association Analysis.	Birth weight (MTAG)	up to 182,902 European ancestry individuals	NA	6p22.3	NR	rs7756992-A	0.72	3E-25		0.043162063	[0.035-0.051] unit increase	NR [1977400] (imputed)	N
742	chr6	20679708	20679709	rs7756992	31681408	Yang XL	2019-10-11	Front Genet	Three Novel Loci for Infant Head Circumference Identified by a Joint Association Analysis.	Birth length (MTAG)	up to 182,902 European ancestry individuals	NA	6p22.3	NR	rs7756992-A	0.721	1E-19		0.058739975	[0.046-0.071] unit increase	NR [1977400] (imputed)	N
742	chr6	20679708	20679709	rs7756992	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Type 2 diabetes	approximately 459,000 European ancestry individuals	NA	6p22.3		rs7756992-?	NR	5E-31				NR [~ 8900000] (imputed)	N
742	chr6	20679708	20679709	rs7756992	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	6p22.3	CDKAL1	rs7756992-G	0.2735	2E-88		1.15	[1.13-1.17]	Affymetrix, Illumina [~ 27000000] (imputed)	N
742	chr6	20679708	20679709	rs7756992	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	6p22.3	CDKAL1	rs7756992-G	0.266895680827625	6E-62		0.1297	[0.11-0.14] unit increase	NR [5035015] (imputed)	N
742	chr6	20679708	20679709	rs7756992	28898252	Wheeler E	2017-09-12	PLoS Med	Impact of common genetic determinants of Hemoglobin A1c on type 2 diabetes risk and diagnosis in ancestrally diverse populations: A transethnic genome-wide meta-analysis.	Glycated hemoglobin levels	88,355 European ancestry individuals	NA	6p22.3	CDKAL1	rs7756992-G	0.2862	3E-12		0.0123	[0.0088-0.0158] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
742	chr6	20679708	20679709	rs7756992	28898252	Wheeler E	2017-09-12	PLoS Med	Impact of common genetic determinants of Hemoglobin A1c on type 2 diabetes risk and diagnosis in ancestrally diverse populations: A transethnic genome-wide meta-analysis.	Glycated hemoglobin levels	18,472 East Asian ancestry individuals	NA	6p22.3	CDKAL1	rs7756992-G	0.5103	1E-7		0.0192	[0.012-0.026] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
742	chr6	20679708	20679709	rs7756992	28490609	Wood AR	2017-05-10	Diabetes	A Genome-Wide Association Study of IVGTT-Based Measures of First-Phase Insulin Secretion Refines the Underlying Physiology of Type 2 Diabetes Variants.	Insulin secretion rate	527 European ancestry individuals	NA	6p22.3	CDKAL1	rs7756992-G		2E-7		0.232	[0.14-0.32] unit decrease	Affymetrix, Illumina [~ 39000000] (imputed)	N
742	chr6	20679708	20679709	rs7756992	26961502	Wood AR	2016-03-10	Diabetologia	Variants in the FTO and CDKAL1 loci have recessive effects on risk of obesity and type 2 diabetes, respectively.	Type 2 diabetes	4,040 British ancestry cases, 113,735 British ancestry controls	NA	6p22.3	CDKAL1	rs7756992-G	NR	1E-8	(additive model)	1.153	[1.1-1.21]	NR [9288881] (imputed)	N
742	chr6	20679708	20679709	rs7756992	24509480	Mahajan A	2014-02-09	Nat Genet	Genome-wide trans-ancestry meta-analysis provides insight into the genetic architecture of type 2 diabetes susceptibility.	Type 2 diabetes	12,171 European ancestry cases, 56,862 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls	21,491 European ancestry cases, 55,647 European ancestry controls	6p22.3	CDKAL1	rs7756992-G	0.26	2E-26		1.2	[1.16-1.25]	Affymetrix, Illumina [2500000] (imputed)	N
742	chr6	20679708	20679709	rs7756992	22885922	Morris AP	2012-09-01	Nat Genet	Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes.	Type 2 diabetes	6,377 European ancestry male cases, 5,794 European ancestry female cases, 22,243 European ancestry male controls, 34,619 European ancestry female controls	12,938 European ancestry male cases, 8,553 European ancestry female cases, 904 Pakistani ancestry male cases, 274 Pakistani ancestry female cases, 30,273 European ancestry male controls, 25,374 European ancestry female controls, 2,088 Pakistani ancestry male controls, 384 Pakistani ancestry female controls	6p22.3	CDKAL1	rs7756992-G	NR	2E-22	(men)	1.17	[1.35-1.44]	Affymetrix, Illumina [up to 2500000] (imputed)	N
742	chr6	20679708	20679709	rs7756992	22885922	Morris AP	2012-09-01	Nat Genet	Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes.	Type 2 diabetes	6,377 European ancestry male cases, 5,794 European ancestry female cases, 22,243 European ancestry male controls, 34,619 European ancestry female controls	12,938 European ancestry male cases, 8,553 European ancestry female cases, 904 Pakistani ancestry male cases, 274 Pakistani ancestry female cases, 30,273 European ancestry male controls, 25,374 European ancestry female controls, 2,088 Pakistani ancestry male controls, 384 Pakistani ancestry female controls	6p22.3	CDKAL1	rs7756992-G	NR	2E-20	(female)	1.17	[1.14-1.22]	Affymetrix, Illumina [up to 2500000] (imputed)	N
742	chr6	20679708	20679709	rs7756992	22885922	Morris AP	2012-09-01	Nat Genet	Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes.	Type 2 diabetes	6,377 European ancestry male cases, 5,794 European ancestry female cases, 22,243 European ancestry male controls, 34,619 European ancestry female controls	12,938 European ancestry male cases, 8,553 European ancestry female cases, 904 Pakistani ancestry male cases, 274 Pakistani ancestry female cases, 30,273 European ancestry male controls, 25,374 European ancestry female controls, 2,088 Pakistani ancestry male controls, 384 Pakistani ancestry female controls	6p22.3	CDKAL1	rs7756992-G	0.292255246133759	7E-35		1.17	[1.14-1.20]	Affymetrix, Illumina [up to 2500000] (imputed)	N
742	chr6	20679708	20679709	rs7756992	17460697	Steinthorsdottir V	2007-04-26	Nat Genet	A variant in CDKAL1 influences insulin response and risk of type 2 diabetes.	Type 2 diabetes	1,399 European ancestry cases, 5,275 European ancestry controls	2,174 European ancestry cases, 7,287 European ancestry controls	6p22.3	CDKAL1	rs7756992-G	0.26	8E-9		1.2	[1.13-1.27]	Illumina [at least 313179]	N
742	chr6	20680677	20680678	rs9348441	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	6p22.3		rs9348441-A	0.413939164	2E-83		0.1792308	[0.16-0.2] unit increase	Illumina [13429769] (imputed)	N
742	chr6	20680677	20680678	rs9348441	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	35,619 East Asian ancestry individuals	NA	6p22.3	CDKAL1	rs9348441-A	0.394	6E-8		0.0231	[0.015-0.031] unit increase	Affymetrix, Illumina [15438438] (imputed)	N
742	chr6	20680677	20680678	rs9348441	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	200,622 European ancestry individuals	NA	6p22.3	CDKAL1	rs9348441-A	0.2827	4E-20		0.0176	[0.014-0.021] unit increase	Affymetrix, Illumina [34064007] (imputed)	N
742	chr6	20680863	20680864	rs9368220	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6p22.3	E2F3	rs9368220-?	NR	5E-6	(CE 20:5)	3.8474035	[2.2-5.5] unit increase	Affymetrix [at least 2500000] (imputed)	N
742	chr6	20682621	20682622	rs35612982	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MLN	5,368 Icelandic ancestry individuals	NA	6p22.3		rs35612982-C	0.1442	5E-20		0.246011	[0.19-0.3] unit increase	Illumina [7506463] (imputed)	N
742	chr6	20682621	20682622	rs35612982	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	33,307 East Asian ancestry individuals	NA	6p22.3	CDKAL1	rs35612982-T	0.6038	7E-14		0.0212	[0.016-0.027] unit decrease	Affymetrix, Illumina [15728197] (imputed)	N
742	chr6	20682621	20682622	rs35612982	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	6p22.3	CDKAL1	rs35612982-T	0.587	1E-8	(East Asian)	0.0338	[0.022-0.045] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
742	chr6	20682621	20682622	rs35612982	26818947	Imamura M	2016-01-28	Nat Commun	Genome-wide association studies in the Japanese population identify seven novel loci for type 2 diabetes.	Type 2 diabetes	15,463 Japanese ancestry cases, 26,183 Japanese ancestry controls	20,490 East Asian ancestry cases, 22,922 East Asian ancestry controls, 38,947 European ancestry cases, 121,903 European ancestry controls, 10,587 South Asian ancestry cases, 14,378 South Asian ancestry controls, 3,848 Mexican/Latino cases, 4,366 Mexican/Latino controls	6p22.3	CDKAL1	rs35612982-C	NR	6E-36	(Japanese)	1.2094473	[1.17396934296458-1.24599723388614]	Illumina [7521072] (imputed)	N
742	chr6	20682783	20682806	rs60229538	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	6p22.3		rs60229538-A	NR	6E-33		0.0233	[0.02-0.027] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
742	chr6	20682783	20682806	rs60229538	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	6p22.3		rs60229538-A	NR	1E-29		0.0254	[0.021-0.03] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
742	chr6	20683163	20683164	rs9350271	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	6p22.3	CDKAL1	rs9350271-A	0.307975	4E-12		0.0163174	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
742	chr6	20683163	20683164	rs9350271	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	6p22.3		rs9350271-A	0.417612465	2E-93		1.1879035	[1.168513109-1.207615704]	Illumina [8919992] (imputed)	N
742	chr6	20683163	20683164	rs9350271	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	6p22.3	CDKAL1	rs9350271-A	0.423	5E-183		1.21	[1.20-1.23]	Affymetrix, Illumina [11800000] (imputed)	N
742	chr6	20685485	20685486	rs9356744	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	6p22.3		rs9356744-C	0.425276746	5E-59		0.16101964	[0.14-0.18] unit increase	Illumina [13134967] (imputed)	N
742	chr6	20685485	20685486	rs9356744	25187374	Hwang JY	2014-09-03	Diabetes	Genome-wide association meta-analysis identifies novel variants associated with fasting plasma glucose in East Asians.	Fasting plasma glucose	24,740 East Asian ancestry individuals	21,345 East Asian ancestry individuals	6p22.3	CDKAL1	rs9356744-?	NR	9E-10		0.057	[0.039-0.075] unit increase	Affymetrix, Illumina [up to 2315813] (imputed)	N
742	chr6	20685485	20685486	rs9356744	24861553	Wen W	2014-05-26	Hum Mol Genet	Meta-analysis of genome-wide association studies in East Asian-ancestry populations identifies four new loci for body mass index.	Body mass index	82,438 East Asian ancestry individuals, 4,301 South East Asian ancestry individuals	Up to 47,352 East Asian ancestry individuals	6p22.3	CDKAL1	rs9356744-T	0.57	5E-13		0.0374	[0.027-0.048] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
742	chr6	20685485	20685486	rs9356744	22344219	Wen W	2012-02-19	Nat Genet	Meta-analysis identifies common variants associated with body mass index in east Asians.	Body mass index	22,762 East Asian ancestry individuals, 2,522 Malay ancestry individuals, 2,431 Chinese, Malay and Asian Indian ancestry individuals	53,215 East Asian ancestry results, 2,118 Malay ancestry individuals	6p22.3	CDKAL1	rs9356744-T	0.58	2E-11		3.39	[1.90-4.88] % increase	Affymetrix, Illumina [2474474] (imputed)	N
742	chr6	20686572	20686573	rs7766070	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	6p22.3		rs7766070-A	0.425346	6E-31		0.0317414	[0.026-0.037] unit decrease	Illumina [13479924] (imputed)	N
742	chr6	20686572	20686573	rs7766070	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	6p22.3		rs7766070-A	NR	5E-75		0.1453	[0.13-0.16] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
742	chr6	20686572	20686573	rs7766070	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	6p22.3		rs7766070-A	NR	8E-35		0.027	[0.023-0.031] unit increase	Affymetrix, Illumina [20535873] (imputed)	N
742	chr6	20686572	20686573	rs7766070	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6p22.3	CDKAL1	rs7766070-A	0.264227	9E-17		0.020558344	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
742	chr6	20686572	20686573	rs7766070	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 29,0641 European ancestry controls	NA	6p22.3	CDKAL1	rs7766070-A	0.265183	3E-19		0.117920004	[0.092-0.144] unit increase	Affymetrix [7288503] (imputed)	N
742	chr6	20686572	20686573	rs7766070	27189021	Cook JP	2016-05-18	Eur J Hum Genet	Multi-ethnic genome-wide association study identifies novel locus for type 2 diabetes susceptibility.	Type 2 diabetes	746 African American cases, 2,825 African American controls, 743 East Asian ancestry cases, 3,992 East Asian ancestry controls, 7,111 European ancestry cases, 49,688 European ancestry controls, 1,147 Latino cases, 5,352 Latino controls	12,171 European ancestry cases, 56,862 European ancestry controls	6p22.3	CDKAL1	rs7766070-A	0.274	2E-11		1.12	[1.09-1.16]	NR [at least 8497425] (imputed)	N
742	chr6	20686572	20686573	rs7766070	25483131	Ghassibe-Sabbagh M	2014-12-08	Sci Rep	T2DM GWAS in the Lebanese population confirms the role of TCF7L2 and CDKAL1 in disease susceptibility.	Type 2 diabetes	1,384 Lebanese ancestry cases, 1,902 Lebanese ancestry controls	NA	6p22.3	CDKAL1	rs7766070-A	0.29	9E-9		1.38	[1.24-1.54]	Illumina [5891794] (imputed)	N
742	chr6	20686572	20686573	rs7766070	22693455	Perry JR	2012-05-31	PLoS Genet	Stratifying type 2 diabetes cases by BMI identifies genetic risk variants in LAMA1 and enrichment for risk variants in lean compared to obese cases.	Type 2 diabetes	2,112 lean type 2 diabetes cases, 4,123 obese type 2 diabetes cases, 54,412 controls	2,881 lean type 2 diabetes cases, 8,702 obese type 2 diabetes cases, 18,957 controls	6p22.3	CDKAL1	rs7766070-A	0.27	7E-10	(Lean)	1.26	[1.17-1.35]	NR [NR]	N
742	chr6	20686572	20686573	rs7766070	22693455	Perry JR	2012-05-31	PLoS Genet	Stratifying type 2 diabetes cases by BMI identifies genetic risk variants in LAMA1 and enrichment for risk variants in lean compared to obese cases.	Type 2 diabetes	2,112 lean type 2 diabetes cases, 4,123 obese type 2 diabetes cases, 54,412 controls	2,881 lean type 2 diabetes cases, 8,702 obese type 2 diabetes cases, 18,957 controls	6p22.3	CDKAL1	rs7766070-A	0.27	6E-11	(Obese)	1.21	[1.14-1.28]	NR [NR]	N
742	chr6	20686877	20686878	rs67131976	29381148	Gong J	2017-12-21	Int J Obes (Lond)	Trans-ethnic analysis of metabochip data identifies two new loci associated with BMI.	Body mass index	35,606 African American individuals, 26,048 Hispanic/Latino individuals, 22,466 Asian or Native Hawaiian ancestry individuals, 17,859 European ancestry individuals, 535 Native American individuals	NA	6p22.3	CDKAL1	rs67131976-A		5E-10		0.006	unit decrease	Illumina [at least 200000]	N
742	chr6	20686995	20686996	rs9368222	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	6p22.3		rs9368222-A	NR	2E-122		0.1551	[0.14-0.17] unit increase	Affymetrix, Illumina [25845091] (imputed)	N
742	chr6	20686995	20686996	rs9368222	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	71,221 East Asian ancestry individuals	NA	6p22.3		rs9368222-A	0.433489	2E-30		0.0487275	[0.04-0.057] unit increase	Illumina [13466143] (imputed)	N
742	chr6	20686995	20686996	rs9368222	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting glucose	67,506 European ancestry men	NA	6p22.3	CDKAL1	rs9368222-C	0.708391	1E-6		0.016737	[0.01-0.0235] unit decrease	Affymetrix, Illumina [8700000] (imputed)	N
742	chr6	20686995	20686996	rs9368222	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting glucose	151,188 European ancestry individuals	NA	6p22.3	CDKAL1	rs9368222-C	0.708391	3E-9		0.01353	[0.0091-0.018] unit decrease	Affymetrix, Illumina [8700000] (imputed)	N
742	chr6	20686995	20686996	rs9368222	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	6p22.3		rs9368222-?	NR	3E-8				NR [~ 8900000] (imputed)	N
742	chr6	20686995	20686996	rs9368222	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	6p22.3	CDKAL1	rs9368222-A	0.2637	7E-12		0.2018	[0.14-0.26] mmHg increase	Affymetrix [NR] (imputed)	N
742	chr6	20686995	20686996	rs9368222	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	6p22.3	CDKAL1	rs9368222-A	0.2643	1E-9		0.1302	[0.088-0.172] mmHg increase	Affymetrix [NR] (imputed)	N
742	chr6	20686995	20686996	rs9368222	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	6p22.3	CDKAL1	rs9368222-A	0.2695	4E-17		0.2301	[0.18-0.28] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
742	chr6	20686995	20686996	rs9368222	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	6p22.3	CDKAL1	rs9368222-?	0.27	8E-22		0.024	[0.02-0.028] unit decrease	Illumina [6108953] (imputed)	N
742	chr6	20686995	20686996	rs9368222	28490609	Wood AR	2017-05-10	Diabetes	A Genome-Wide Association Study of IVGTT-Based Measures of First-Phase Insulin Secretion Refines the Underlying Physiology of Type 2 Diabetes Variants.	Peak insulin response	2,337 Hispanic individuals, 2,159 European ancestry individuals, 332 Pima Indian ancestry individuals	739 European ancestry individuals	6p22.3	CDKAL1	rs9368222-A		9E-16		0.178	[0.13-0.22] pmol/l decrease	Affymetrix, Illumina [~ 39000000] (imputed)	N
742	chr6	20686995	20686996	rs9368222	28490609	Wood AR	2017-05-10	Diabetes	A Genome-Wide Association Study of IVGTT-Based Measures of First-Phase Insulin Secretion Refines the Underlying Physiology of Type 2 Diabetes Variants.	Acute insulin response	2,346 Hispanic individuals, 2,087 European ancestry individuals, 332 Pima Indian ancestry individuals	741 European ancestry individuals	6p22.3	CDKAL1	rs9368222-A		4E-12		0.154	[0.11-0.2] unit decrease	Affymetrix, Illumina [~ 39000000] (imputed)	N
742	chr6	20686995	20686996	rs9368222	25631608	Wessel J	2015-01-29	Nat Commun	Low-frequency and rare exome chip variants associate with fasting glucose and type 2 diabetes susceptibility.	Fasting blood glucose	50,900 European ancestry non-diabetic individuals, 9,664 African American non-diabetic individuals	NA	6p22.3	CDKAL1	rs9368222-G	0.316134219089604	7E-6		0.015484853	[0.0087-0.0222] unit increase	Illumina [197481]	N
742	chr6	20688120	20688121	rs10440833	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	6p22.3		rs10440833-A	0.2663	2E-11		0.13032074	[0.092-0.169] mmHg increase	Affymetrix, Illumina [242866] (imputed)	N
742	chr6	20688120	20688121	rs10440833	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	46,511 Asian ancestry cases, 169,776 Asian ancestry controls	NA	6p22.3	NR	rs10440833-T	0.5769	7E-87		0.1725	[0.16-0.19] unit decrease	Affymetrix, Illumina [1077427] (imputed)	N
742	chr6	20688120	20688121	rs10440833	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	6p22.3	NR	rs10440833-T	0.7028	5E-215		0.1286	[0.12-0.14] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
742	chr6	20688120	20688121	rs10440833	31097437	Plotnikov D	2019-05-16	Br J Ophthalmol	Association between birth weight and refractive error in adulthood: a Mendelian randomisation study.	Birth weight	188,039 European ancestry individuals	NA	6p22.3	NR	rs10440833-A	0.26	3E-25		0.038	[0.03-0.046] z score decrease	Affymetrix [up to 10400000] (imputed)	N
742	chr6	20688120	20688121	rs10440833	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	6p22.3	CDKAL1	rs10440833-A	0.42	2E-85		1.19	1.17-1.21	Illumina [12557761] (imputed)	N
742	chr6	20688120	20688121	rs10440833	20581827	Voight BF	2010-06-27	Nat Genet	Twelve type 2 diabetes susceptibility loci identified through large-scale association analysis.	Type 2 diabetes	8,130 European ancestry cases, 38,987 European ancestry controls	Up to 34,412 European ancestry cases, 59,925 European ancestry controls	6p22.3	CDKAL1	rs10440833-A		2E-22		1.25	[1.20-1.31]	Affymetrix, Illumina [2426886] (imputed)	N
742	chr6	20693697	20693698	rs138420022	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	163,835 East Asian ancestry individuals	NA	6p22.3		rs138420022-A	0.416275	1E-30		0.0372087	[0.031-0.044] unit decrease	Illumina [13479178] (imputed)	N
742	chr6	20693697	20693698	rs138420022	33500527	Park JM	2021-01-26	Sci Rep	Understanding the genetic architecture of the metabolically unhealthy normal weight and metabolically healthy obese phenotypes in a Korean population.	Metabolically unhealthy in normal weight	10,358 Korean ancestry cases, 23,466 Korean ancestry controls	NA	6p22.3	CDKAL1	rs138420022-A	0.47	1E-14		1.15	[1.11-1.19]	Affymetrix [7975321]	N
742	chr6	20694883	20694884	rs2206734	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Hypertension	810,865 European ancestry individuals, 21,077 African American individuals, 33,689 South Asian ancestry individuals, 4,586 Hispanic individuals	354,096 European ancestry individuals, 63,282 African American individuals, 4,792 East Asian ancestry individuals, 22,802 Hispanic individuals, 2,695 Native American ancestry individuals	6p22.3		rs2206734-T	0.1808	5E-9		5.85873	z score increase	Affymetrix, Illumina [246710] (imputed)	N
742	chr6	20694883	20694884	rs2206734	32794382	Cho SB	2020-07-28	Diabetes Metab J	Exome Chip Analysis of 14,026 Koreans Reve-als Known and Newly Discovered Genetic Loci Associated with Type 2 Diabetes Mellitus.	Type 2 diabetes	14,026 Korean ancestry individuals	NA	6p22.3	CDKAL1	rs2206734-A	0.46	2E-10		1.25	[1.17-1.34]	Illumina [up to 242901]	N
742	chr6	20694883	20694884	rs2206734	25524916	Palmer ND	2014-12-18	Diabetes	Genetic Variants Associated With Quantitative Glucose Homeostasis Traits Translate to Type 2 Diabetes in Mexican Americans: The GUARDIAN (Genetics Underlying Diabetes in Hispanics) Consortium.	Glucose homeostasis traits	up to 4,176 Mexican American individuals	NA	6p22.3	CDKAL1	rs2206734-?		1E-6	(AIRg)	2.05	[1.17-2.93] unit decrease	Illumina [693128]	N
742	chr6	20694883	20694884	rs2206734	22344221	Okada Y	2012-02-19	Nat Genet	Common variants at CDKAL1 and KLF9 are associated with body mass index in east Asian populations.	Body mass index (SNP x SNP interaction)	26,620 Japanese ancestry individuals	35,625 East Asian ancestry individuals	6p22.3	CDKAL1	rs2206734-C	0.59	1E-11		0.039	[0.027-0.051] unit increase	Illumina [2178018] (imputed)	N
742	chr6	20694883	20694884	rs2206734	21139019	Walsh KM	2010-12-07	Endocr Relat Cancer	A pilot genome-wide association study shows genomic variants enriched in the non-tumor cells of patients with well-differentiated neuroendocrine tumors of the ileum.	Ileal carcinoids	239 European ancestry cases, 107 European ancestry controls	NA	6p22.3	CDKAL1	rs2206734-?	NR	8E-6		3.45	[2.08-5.56]	Illumina [308330]	N
742	chr6	20703951	20703952	rs6931514	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Alanine levels	115,078 European ancestry individuals	NA	6p22.3		rs6931514-A	0.737734	3E-15		0.0367581	[0.028-0.046] unit decrease	NR [11722792] (imputed)	N
742	chr6	20703951	20703952	rs6931514	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	6p22.3	CDKAL1	rs6931514-A	0.731	1E-13		0.0102	[0.0075-0.0129] unit decrease	Affymetrix, Illumina [33811881] (imputed)	N
742	chr6	20703951	20703952	rs6931514	23202124	Horikoshi M	2012-12-02	Nat Genet	New loci associated with birth weight identify genetic links between intrauterine             growth and adult height and metabolism.	Birth weight	Up to 26,836 European ancestry individuals	Up to 42,519 European ancestry individuals	6p22.3	CDKAL1	rs6931514-G	0.29	2E-18		0.05	[0.038-0.062] gram decrease	Affymetrix, Illumina [~ 2700000] (imputed)	N
742	chr6	20703951	20703952	rs6931514	18372903	Zeggini E	2008-03-30	Nat Genet	Meta-analysis of genome-wide association data and large-scale replication identifies additional susceptibility loci for type 2 diabetes.	Type 2 diabetes	4,549 European ancestry cases, 5,579 European ancestry controls	24,194 European ancestry cases, 55,598 European ancestry controls	6p22.3	CDKAL1	rs6931514-G	NR	1E-11		1.25	[1.17-1.33]	Affymetrix, Illumina [2202892] (imputed)	N
743	chr6	20716569	20716570	rs2328547	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	6p22.3		rs2328547-G	NR	5E-11		0.0154	[0.011-0.02] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
743	chr6	20717254	20717255	rs9465871	28406950	Kim J	2017-04-13	PLoS One	Interaction of iron status with single nucleotide polymorphisms on incidence of type 2 diabetes.	Prevalent type 2 diabetes	911 Korean ancestry prevalent diabetes cases, 7,024 Korean ancestry incident diabetes and non-diabetes controls		6p22.3	CDKAL1	rs9465871-?	NR	6E-8		1.32		Affymetrix [352228]	N
743	chr6	20717254	20717255	rs9465871	17554300	Wellcome Trust Case Control Consortium	2007-06-07	Nature	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Type 2 diabetes	1,924 European ancestry cases, 2,938 European ancestry controls	(see Zeggini 2007)	6p22.3	CDKAL1	rs9465871-C	0.18	3E-7		1.18	[1.04-1.34]	Affymetrix [469557]	N
743	chr6	20719560	20719561	rs9460550	31118516	Flannick J	2019-05-22	Nature	Exome sequencing of 20,791 cases of type 2 diabetes and 24,440 controls.	Type 2 diabetes	2,277 African American cases, 3,098 East Asian ancestry cases, 3,704 European ancestry cases, 6,215 Hispanic/Latino cases, 2,939 South Asian ancestry cases, 2,283 African American controls, 2,921 East Asian ancestry controls, 3,514 European ancestry controls, 5,939 Hispanic/Latino controls, 3,022 South Asian ancestry controls	NA	6p22.3	CDKAL1	rs9460550-A	0.32	7E-15		1.15	NR	Affymetrix, Illumina [up to 35256845] (imputed)	N
743	chr6	20720817	20720818	rs9350272	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Chloride levels	126,402 Japanese ancestry individuals	NA	6p22.3	CDKAL1	rs9350272-?	NR	7E-9		0.02301	[0.015-0.031] unit decrease	Illumina [6108953] (imputed)	N
743	chr6	20723792	20723793	rs78489263	30219690	Heinzman JT	2018-09-07	J Affect Disord	GWAS and systems biology analysis of depressive symptoms among smokers from the COPDGene cohort.	Depression in smokers	1,622 European ancestry cases, 391 African American cases, 4,954 European ancestry controls, 2,749 African American controls	NA	6p22.3	CDKAL1	rs78489263-A	0.9488	2E-6	(AA)			Illumina [NR] (imputed)	N
743	chr6	20725422	20725423	rs7747752	22290723	Ryu J	2012-01-30	Hum Mutat	Association of glycosylated hemoglobin with the gene encoding CDKAL1 in the Korean Association Resource (KARE) study.	Glycated hemoglobin levels	4,275 Korean ancestry individuals	3,782 Korean ancestry individuals	6p22.3	CDKAL1	rs7747752-C	0.53	1E-11		0.046	[NR] % decrease	Affymetrix [1693116] (imputed)	N
743	chr6	20728512	20728513	rs6928012	33385400	Patrick MT	2020-12-29	J Invest Dermatol	Causal relationship and shared genetic loci between psoriasis and type 2 diabetes through trans-disease meta-analysis.	Psoriasis or type 2 diabetes (trans-disease meta-analysis)(opposite effect)	11,024 European ancestry psoriasis cases, 74,124 European ancestry diabetes cases, 840,342 European ancestry controls	NA	6p22.3	NR	rs6928012-C		2E-13		1.08		NR [8016731] (imputed)	N
743	chr6	20728512	20728513	rs6928012	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p22.3	NR	rs6928012-T	0.5967	2E-6	(EA)	0.0303	[0.018-0.043] unit decrease	Illumina [~ 11800000] (imputed)	N
743	chr6	20728730	20728731	rs6908425	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	6p22.3	NR	rs6908425-G	0.78	4E-6	(EA)	1.0734457		Affymetrix, Illumina [~ 9000000] (imputed)	N
743	chr6	20728730	20728731	rs6908425	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	6p22.3	NR	rs6908425-G	0.78	5E-12	(EA)	1.1095867	[1.08-1.14]	Affymetrix, Illumina [~ 9000000] (imputed)	N
743	chr6	20728730	20728731	rs6908425	21102463	Franke A	2010-11-21	Nat Genet	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry trios	6p22.3	CDKAL1	rs6908425-C	0.784	1E-8		1.17	[1.11-1.23]	Affymetrix, Illumina [953241] (imputed)	N
743	chr6	20728730	20728731	rs6908425	18587394	Barrett JC	2008-06-29	Nat Genet	Genome-wide association defines more than 30 distinct susceptibility loci for Crohn's disease.	Crohn's disease	3,230 European ancestry cases, 4,829 European ancestry controls	1,339 European ancestry trios, 2,325 European ancestry cases, 1,809 European ancestry controls	6p22.3	CDKAL1	rs6908425-C	0.78	9E-10		1.21	[NR]	Affymetrix, Illumina [635547] (imputed)	N
743	chr6	20730800	20730801	rs9942459	33590662	Heilbronner U	2021-02-15	Am J Med Genet B Neuropsychiatr Genet	"The Heidelberg Five" personality dimensions: Genome-wide associations, polygenic risk for neuroticism, and psychopathology 20 years after assessment.	Lack of behavioral control	3,268 European ancestry individuals	NA	6p22.3	NR	rs9942459-T	0.6789	1E-6		0.1294	[0.078-0.181] unit increase	Illumina [8348463] (imputed)	N
743	chr6	20751314	20751315	rs7747724	24163127	Figueroa JD	2013-10-24	Hum Mol Genet	Genome-wide association study identifies multiple loci associated with bladder cancer risk.	Bladder cancer	6,911 European ancestry cases, 11,818 European ancestry controls	801 cases, 1,307 controls	6p22.3	NR	rs7747724-?	NR	1E-6		1.11	[1.06-1.16]	Illumina [462190]	N
743	chr6	20759576	20759577	rs58800477	28090653	Liu Y	2017-01-16	Clin Pharmacol Ther	Genome-Wide Study Links PNPLA3 Variant With Elevated Hepatic Transaminase After Acute Lymphoblastic Leukemia Therapy.	Alanine aminotransferase (ALT) levels after remission induction therapy in actute lymphoblastic leukemia (ALL)	up to 488 European ancestry cases, up to 111 African American cases, up to 60 Hispanic cases, up to 56 other ancestry cases	NA	6p22.3	CDKAL1	rs58800477-G		5E-6		4.1	[1.13-14.91]	Affymetrix, Illumina [NR] (imputed)	N
743	chr6	20761233	20761234	rs9295482	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	6p22.3		rs9295482-?	NR	4E-8				NR [~ 8900000] (imputed)	N
743	chr6	20766696	20766697	rs4510656	24163127	Figueroa JD	2013-10-24	Hum Mol Genet	Genome-wide association study identifies multiple loci associated with bladder cancer risk.	Bladder cancer	6,911 European ancestry cases, 11,818 European ancestry controls	801 cases, 1,307 controls	6p22.3	CDKAL1	rs4510656-C	0.55	7E-7		1.1236	[1.08-1.18]	Illumina [462190]	N
743	chr6	20767889	20767890	rs144740773	31659325	Malhotra R	2019-10-28	Nat Genet	HDAC9 is implicated in atherosclerotic aortic calcification and affects vascular smooth muscle cell phenotype.	Thoracic aortic calcification levels	8,422 European ancestry individuals	NA	6p22.3	CDKAL1	rs144740773-C	0.014	5E-7		5.01	z score decrease	Affymetrix, Illumina [9000000] (imputed)	N
743	chr6	20812587	20812588	rs9358372	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	6p22.3	CDKAL1	rs9358372-?		2E-7				Illumina [9725440] (imputed)	N
743	chr6	20812587	20812588	rs9358372	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	6p22.3	CDKAL1	rs9358372-?		1E-8				Illumina [9560910] (imputed)	N
743	chr6	20812587	20812588	rs9358372	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	6p22.3	NR	rs9358372-G	0.3668	6E-9	(EA)	1.0623451	[1.04-1.08]	Affymetrix, Illumina [~ 9000000] (imputed)	N
743	chr6	20812587	20812588	rs9358372	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	6p22.3	intergenic	rs9358372-G	0.379	9E-14		1.089	[1.057-1.121]	Affymetrix, Illumina [1230000] (imputed)	N
743	chr6	20813211	20813212	rs12192912	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	6p22.3		rs12192912-?	NR	2E-12				NR [~ 8900000] (imputed)	N
743	chr6	20831910	20831911	rs114898510	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	6p22.3	NR	rs114898510-C	NR	5E-14		0.0408	[0.03-0.051] unit increase	Affymetrix [9000000] (imputed)	N
744	chr6	20844150	20844151	rs9356756	33290408	Ray D	2020-12-08	PLoS Genet	A powerful method for pleiotropic analysis under composite null hypothesis identifies novel shared loci between Type 2 Diabetes and Prostate Cancer.	Type 2 diabetes or prostate cancer (pleiotropy)	62,892 European ancestry T2D cases, 79,194 European ancestry PrCa cases, 659,536 European ancestry controls	NA	6p22.3	CDKAL1	rs9356756-?		4E-8				Illumina [5041948] (imputed)	N
744	chr6	20849713	20849714	rs11962974	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p22.3	CDKAL1	rs11962974-T	0.081097	4E-15		0.0317422	[0.024-0.04] unit decrease	Affymetrix [93095623] (imputed)	N
744	chr6	20861225	20861226	rs5007237	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	6p22.3	NR	rs5007237-T	0.763028	3E-10		0.013675	[0.0094-0.0179] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
744	chr6	20862892	20862893	rs75153093	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	6p22.3	CDKAL1	rs75153093-C	0.081874	4E-13		0.030836541	[0.023-0.039] unit decrease	Affymetrix [93095623] (imputed)	N
744	chr6	20875910	20875910	rs142990325	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	6p22.3	CDKAL1	rs142990325-GA	0.076279	2E-12		0.0300231	[0.022-0.038] unit increase	Affymetrix [93095623] (imputed)	N
744	chr6	20893246	20893247	rs6456379	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	6p22.3	NR	rs6456379-A	NR	4E-9		5.876	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
744	chr6	20896552	20896553	rs9295486	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.3	CDKAL1	rs9295486-T	NR	1E-8		5.685	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
744	chr6	20923274	20923275	rs9460578	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p22.3	NR	rs9460578-A	0.2834	1E-6	(EA)	0.0337	[0.02-0.047] unit decrease	Illumina [~ 11800000] (imputed)	N
744	chr6	20930112	20930113	rs11970030	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.3	CDKAL1	rs11970030-C	NR	1E-8		5.723	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
745	chr6	20972347	20972348	rs72834324	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		CDKAL1	rs72834324-?	NR	8E-9		2.05604	[NR] unit decrease	Affymetrix [NR] (imputed)	N
745	chr6	20982604	20982605	rs11961135	31263163	Liu CT	2019-07-01	Sci Rep	Genome-wide Association Study of Change in Fasting Glucose over time in 13,807 non-diabetic European Ancestry Individuals.	Fasting glucose change (short-term)	8,195 European ancestry individuals	NA	6p22.3	CDKAL1	rs11961135-A	0.113	4E-6		0.148	[0.085-0.211] unit increase	Affymetrix, Illumina [~ 25000000] (imputed)	N
745	chr6	21005873	21005874	rs148988294	31659325	Malhotra R	2019-10-28	Nat Genet	HDAC9 is implicated in atherosclerotic aortic calcification and affects vascular smooth muscle cell phenotype.	Thoracic aortic calcification levels	8,422 European ancestry individuals	NA	6p22.3	CDKAL1	rs148988294-T	0.013	1E-7		5.31	z score decrease	Affymetrix, Illumina [9000000] (imputed)	N
745	chr6	21008152	21008153	rs1498426	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6p22.3	E2F3	rs1498426-?	NR	5E-6	(xanthurenate)	0.18674318	[0.11-0.27] unit decrease	Affymetrix [at least 2500000] (imputed)	N
745	chr6	21008738	21008739	rs12192642	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	6p22.3		rs12192642-A	0.2	7E-10		6.16	z score increase	Affymetrix [9061022] (imputed)	N
745	chr6	21027760	21027761	rs12209877	25644384	Davies G	2015-02-03	Mol Psychiatry	Genetic contributions to variation in general cognitive function: a meta-analysis of genome-wide association studies in the CHARGE consortium (N=53949).	Cognitive function	51,719 European ancestry individuals, 1,473 Erasmus Rucphen (founder/genetic isolate) individuals, 327 Korculan (founder/genetic isolate) individuals, 430 Orcadian (founder/genetic isolate) individuals	NA	6p22.3	CDKAL1	rs12209877-?	NR	2E-6		0.0275	[0.016-0.039] unit decrease	Affymetrix, Illumina [2478500] (imputed)	N
745	chr6	21031434	21031435	rs4710962	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.3	NR	rs4710962-?	NR	6E-8		5.431	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
745	chr6	21041697	21041698	rs117835232	29674289	Cheon EJ	2018-04-12	Atherosclerosis	Novel association between CDKAL1 and cholesterol efflux capacity: Replication after GWAS-based discovery.	Cholesterol efflux capacity	607 East Asian ancestry individuals	158 East Asian ancestry individuals	6p22.3	CDKAL1	rs117835232-?	NR	1E-9		8.6	NR unit increase	Affymetrix [~ 5800000] (imputed)	N
746	chr6	21140298	21140299	rs2446485	28322283	Chibnik LB	2017-03-21	Mol Psychiatry	Susceptibility to neurofibrillary tangles: role of the PTPRD locus and limited pleiotropy with other neuropathologies.	Neuropathologic traits (pleiotropy)	909 European ancestry individuals	369 individuals	6p22.3	NR	rs2446485-G	0.82	2E-6	(EA)			Affymetrix, Illumina [NR] (imputed)	N
746	chr6	21140298	21140299	rs2446485	28322283	Chibnik LB	2017-03-21	Mol Psychiatry	Susceptibility to neurofibrillary tangles: role of the PTPRD locus and limited pleiotropy with other neuropathologies.	Neurofibrillary tangles	909 European ancestry individuals	369 individuals	6p22.3	NR	rs2446485-G	0.82	2E-7	(EA)	0.13	[0.08-0.17] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
746	chr6	21150223	21150224	rs9368282	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	6p22.3	CDKAL1	rs9368282-A	0.337	3E-6		0.0012	[0.00061-0.00179] unit increase	Affymetrix [NR] (imputed)	N
746	chr6	21158272	21158273	rs6931316	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	6p22.3	NR	rs6931316-A	0.318028	1E-10		0.012761	[0.0089-0.0166] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
746	chr6	21160048	21160048	rs11442196	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Melanoma	6,777 European ancestry cases, 410,350 European ancestry controls	NA	6p22.3		rs11442196-TA	NR	1E-8		1.1109877	NR	Affymetrix [7846216] (imputed)	N
746	chr6	21160381	21160382	rs7739578	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Melanoma	3,122 White British ancestry cases, 271,708 White British ancestry controls	NA	6p22.3		rs7739578-?	NR	8E-7		1.14167	[1.09-1.19]	NR [674885]	N
746	chr6	21160688	21160689	rs9295499	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	6p22.3		rs9295499-A	0.31	1E-8		5.69	z score increase	Affymetrix [9061022] (imputed)	N
746	chr6	21160688	21160689	rs9295499	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	6p22.3	NR	rs9295499-A	0.3242	1E-9				NR [9056863] (imputed)	N
746	chr6	21163918	21163919	rs6914598	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Nevus count or cutaneous melanoma	36,760 European ancestry cutaneous melanoma cases, 375,188 European ancestry controls, 12,930 European ancestry individuals, 52,847 individuals	NA	6p22.3	CDKAL1	rs6914598-T	0.682676	3E-12				Affymetrix, Illumina [NR] (imputed)	N
746	chr6	21163918	21163919	rs6914598	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous malignant melanoma	36,760 European ancestry cases, 375,188 European ancestry controls	NA	6p22.3	CDKAL1	rs6914598-C	0.3173	1E-18		1.0968521	NR	Affymetrix, Illumina [NR] (imputed)	N
746	chr6	21163918	21163919	rs6914598	28212542	Ransohoff KJ	2017-02-09	Oncotarget	Two-stage genome-wide association study identifies a novel susceptibility locus associated with melanoma.	Melanoma	4,842 European ancestry cases, 286,565 European ancestry controls	1,804 European ancestry cases, 1,026 European ancestry controls	6p22.3	CDKAL1	rs6914598-C	0.31	4E-8		1.1	[NR]	Illumina [at least 560000] (imputed)	N
746	chr6	21163918	21163919	rs6914598	26237428	Law MH	2015-08-03	Nat Genet	Genome-wide meta-analysis identifies five new susceptibility loci for cutaneous malignant melanoma.	Cutaneous malignant melanoma	12,874 European ancestry cases, 23,203 European ancestry controls	785 European ancestry cases, 791 European ancestry controls, 2,331 cases, 2,415 controls	6p22.3	CDKAL1	rs6914598-C	0.32	4E-8		0.1	[NR] unit increase	Affymetrix, Illumina [at least 1569314] (imputed)	N
746	chr6	21164130	21164131	rs6935117	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	6p22.3	CDKAL1	rs6935117-G	0.322632	7E-9		0.013810942	[0.0091-0.0185] unit increase	Affymetrix [93095623] (imputed)	N
746	chr6	21168171	21168172	rs55917589	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	6p22.3	NR	rs55917589-?	NR	6E-6		0.1841	[0.1-0.27] unit increase	Illumina [at least 560000] (imputed)	N
746	chr6	21196500	21196501	rs118065692	29674289	Cheon EJ	2018-04-12	Atherosclerosis	Novel association between CDKAL1 and cholesterol efflux capacity: Replication after GWAS-based discovery.	Cholesterol efflux capacity	607 East Asian ancestry individuals	158 East Asian ancestry individuals	6p22.3	CDKAL1	rs118065692-?	NR	2E-10		7.8	NR unit increase	Affymetrix [~ 5800000] (imputed)	N
747	chr6	21264119	21264120	rs807816	32752121	Nedoszytko B	2020-07-31	Int J Mol Sci	Results from a Genome-Wide Association Study (GWAS) in Mastocytosis Reveal New Gene Polymorphisms Associated with WHO Subgroups.	Systemic mastocytosis	93 European ancestry cases, 5,606 European ancestry controls	NA	6p22.3	NR	rs807816-G	0.09049	4E-7		2.496	[2.13-2.86]	Illumina [281811]	N
747	chr6	21322461	21322462	rs9358412	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Prostate cancer	11,599 European ancestry cases, 199,628 European ancestry controls, 5,672 East Asian ancestry cases, 84,660 East Asian ancestry controls	NA	6p22.3		rs9358412-A	NR	3E-10		0.0908	[0.063-0.119] unit decrease	Affymetrix, Illumina [25775424] (imputed)	N
747	chr6	21330292	21330293	rs12198220	25939597	Berndt SI	2015-05-05	Nat Commun	Two susceptibility loci identified for prostate cancer aggressiveness.	Prostate cancer	4,600 European ancestry cases, 2,941 European ancestry controls	7,779 European ancestry cases, 7,623 European ancestry controls	6p22.3	CDKAL1	rs12198220-T	0.74	2E-7		1.12	[1.07-1.17]	Illumina [1531807] (imputed)	N
747	chr6	21330688	21330689	rs6927369	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	6p22.3	NR	rs6927369-C	NR	2E-16		1.067	[1.05-1.08]	Affymetrix, Illumina [29235255] (imputed)	N
747	chr6	21330688	21330689	rs6927369	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	8,611 East Asian ancestry cases, 18,809 East Asian ancestry controls	NA	6p22.3	NR	rs6927369-C	0.348	5E-7		1.096	[1.06-1.14]	Affymetrix, Illumina [10186136] (imputed)	N
747	chr6	21331906	21331907	rs17622252	25827505	Swaminathan S	2015-03-14	J Affect Disord	Characteristics of Bipolar I patients grouped by externalizing disorders.	Bipolar disorder	472 non-externalizing cases, 796 externalizing cases	436 non-externalizing European ancestry cases, 801 externalizing European ancestry cases	6p22.3	CDKAL1	rs17622252-?		4E-6	(externalizing vs. non-externalizing)	1.658	[NR]	Affymetrix [677171]	N
748	chr6	21368677	21368678	rs6456420	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	6p22.3		rs6456420-C	0.34743	3E-10		0.014688811	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
748	chr6	21374045	21374046	rs34184414	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	6p22.3		rs34184414-C	0.624266	3E-9		0.013790089	[0.0092-0.0183] unit increase	Affymetrix [93095623] (imputed)	N
748	chr6	21379610	21379611	rs6927936	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	6p22.3		rs6927936-C	0.622014	1E-10		0.014511021	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
748	chr6	21379610	21379611	rs6927936	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	6p22.3		rs6927936-C	0.62203	1E-10		0.014657525	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
748	chr6	21379610	21379611	rs6927936	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	6p22.3		rs6927936-?	NR	4E-14				NR [~ 8900000] (imputed)	N
748	chr6	21381526	21381527	rs6917586	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	6p22.3	intergenic	rs6917586-A	0.3569	1E-12		0.02659973	[0.019-0.034] unit decrease	Affymetrix [~ 2500000] (imputed)	N
748	chr6	21381526	21381527	rs6917586	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	6p22.3	intergenic	rs6917586-A	0.357	2E-11		0.02533813	[0.018-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
748	chr6	21381526	21381527	rs6917586	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	6p22.3	intergenic	rs6917586-A	0.3569	4E-11		0.02482486	[0.017-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
748	chr6	21381526	21381527	rs6917586	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	6p22.3	intergenic	rs6917586-A	0.357	3E-11		0.02485541	[0.018-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
748	chr6	21381526	21381527	rs6917586	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	6p22.3	intergenic	rs6917586-A	0.3569	8E-12		0.02577226	[0.018-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
748	chr6	21381526	21381527	rs6917586	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	6p22.3	intergenic	rs6917586-A	0.3569	2E-11		0.02532662	[0.018-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
748	chr6	21381567	21381568	rs6940342	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p22.3	NR	rs6940342-C	0.622677	5E-25		0.023464229	[0.019-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
748	chr6	21382764	21382765	rs4712614	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	6p22.3		rs4712614-G	NR	1E-17		0.0187	[0.014-0.023] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
748	chr6	21382764	21382765	rs4712614	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p22.3		rs4712614-T	0.378	3E-11				Affymetrix [10369434] (imputed)	N
748	chr6	21382764	21382765	rs4712614	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	6p22.3		rs4712614-G	0.621682	6E-22		0.021945769	[0.017-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
748	chr6	21382764	21382765	rs4712614	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	6p22.3	NR	rs4712614-G	0.619988	3E-30		0.021637	[0.018-0.025] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
748	chr6	21382764	21382765	rs4712614	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p22.3	NR	rs4712614-G	0.618526	7E-23				Affymetrix, Illumina [23114412] (imputed)	N
748	chr6	21382764	21382765	rs4712614	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	6p22.3	NR	rs4712614-G	0.620331	1E-23		0.01986	[0.016-0.024] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
748	chr6	21382764	21382765	rs4712614	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p22.3	NR	rs4712614-G	0.620385	6E-10				Affymetrix, Illumina [24558453] (imputed)	N
748	chr6	21382764	21382765	rs4712614	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	6p22.3		rs4712614-?	NR	1E-24				NR [~ 8900000] (imputed)	N
748	chr6	21383415	21383416	rs4710971	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p22.3	NR	rs4710971-G	0.622674	2E-29				Affymetrix, Illumina [24649327] (imputed)	N
748	chr6	21384612	21384613	rs9466056	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	6p22.3	LINC00581	rs9466056-A	0.38	4E-11		0.0124402	[0.0087-0.0161] unit decrease	NR [13737936] (imputed)	N
748	chr6	21384612	21384613	rs9466056	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	6p22.3		rs9466056-?	NR	2E-10				NR [~ 8900000] (imputed)	N
748	chr6	21384612	21384613	rs9466056	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p22.3		rs9466056-?	NR	5E-9		0.0119076	[0.0077-0.0161] unit decrease	Affymetrix [20259828] (imputed)	N
748	chr6	21384612	21384613	rs9466056	22504420	Estrada K	2012-04-15	Nat Genet	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Femoral neck bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	6p22.3	CDKAL1	rs9466056-A	0.38	3E-13		0.04	[NR] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
748	chr6	21384612	21384613	rs9466056	21533022	Duncan EL	2011-04-21	PLoS Genet	Genome-wide association study using extreme truncate selection identifies novel genes affecting bone mineral density and fracture risk.	Bone mineral density	900 European ancestry female individuals with low hip bone mineral density, 1,055 European ancestry female individuals with high hip bone mineral density	20,898 European ancestry female individuals	6p22.3	SOX4	rs9466056-G	NR	4E-6	(femoral neck)	0.05	[NR] unit increase	Illumina [2543887] (imputed)	N
748	chr6	21390831	21390832	rs183954794	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	6p22.3	LINC00581	rs183954794-?		6E-6	(dominant)	0.451	[NR] unit increase	Illumina [1492601] (imputed)	N
748	chr6	21390831	21390832	rs183954794	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	6p22.3	LINC00581	rs183954794-?		2E-6	(heterogeneous)	0.481	[0.28-0.68] unit increase	Illumina [1492601] (imputed)	N
748	chr6	21391281	21391282	rs10946458	29499414	Pei YF	2018-02-27	Bone	Joint study of two genome-wide association meta-analyses identified 20p12.1 and 20q13.33 for bone mineral density.	Lumbar spine bone mineral density	up to 4,692 European ancestry individuals, up to 1,539 Han Chinese ancestry individuals, up to 849 African American individuals, up to 446 Hispanic individuals, 2,882 European ancestry whole-genome sequenced individuals, 3,549 European ancestry whole-exome sequenced individuals, 26,534 European ancestry non-array genotype imputed individuals	NA	6p22.3	CDKAL1	rs10946458-T	0.667062	2E-9		0.05	[0.034-0.066] unit increase	Affymetrix, Illumina [7998108] (imputed)	N
748	chr6	21391281	21391282	rs10946458	29499414	Pei YF	2018-02-27	Bone	Joint study of two genome-wide association meta-analyses identified 20p12.1 and 20q13.33 for bone mineral density.	Femoral neck bone mineral density	up to 4,692 European ancestry individuals, up to 1,539 Han Chinese ancestry individuals, up to 849 African American individuals, up to 446 Hispanic individuals, 2,882 European ancestry whole-genome sequenced individuals, 3,549 European ancestry whole-exome sequenced individuals, 26,534 European ancestry non-array genotype imputed individuals	NA	6p22.3	CDKAL1	rs10946458-T	0.667062	2E-10		0.0463	[0.032-0.061] unit increase	Affymetrix, Illumina [7998108] (imputed)	N
748	chr6	21430727	21430730	rs71559680	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	6p22.3	Intergenic	rs71559680-?		5E-7				Illumina [9725440] (imputed)	N
748	chr6	21430727	21430730	rs71559680	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	6p22.3	Intergenic	rs71559680-?		2E-8				Illumina [9560910] (imputed)	N
748	chr6	21430727	21430730	rs71559680	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	6p22.3	intergenic	rs71559680-?	NR	6E-12	(subset analysis)			Illumina [130052]	N
748	chr6	21430727	21430730	rs71559680	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	6p22.3	NR	rs71559680-G	0.53	2E-10	(EA)	1.0647465		Affymetrix, Illumina [~ 9000000] (imputed)	N
748	chr6	21430727	21430730	rs71559680	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	6p22.3	NR	rs71559680-G	0.53	2E-15	(EA)	1.1003201	[1.08-1.12]	Affymetrix, Illumina [~ 9000000] (imputed)	N
748	chr6	21430727	21430728	rs12663356	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Crohn's disease	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls	6p22.3	intergenic	rs12663356-C	0.533	4E-12		1.095	[1.06-1.131]	Affymetrix, Illumina [1230000] (imputed)	N
748	chr6	21444532	21444533	rs7752847	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	6p22.3	NR	rs7752847-?	NR	4E-6				Affymetrix [NR]	N
748	chr6	21455152	21455153	rs9460635	23319000	Luykx JJ	2013-01-15	Mol Psychiatry	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA-5-HIAA Factor score)	up to 398 European ancestry individuals	NA	6p22.3	intergenic	rs9460635-C		7E-6		0.2238	unit increase	Illumina [5767231] (imputed)	N
748	chr6	21464050	21464051	rs9460636	33693626	Jamieson SE	2021-03-09	Clin Infect Dis	Common and rare genetic variants that could contribute to severe otitis media in an Australian Aboriginal population.	Otitis media	21 Martu ancestry cases, 370 Martu ancestry controls	NA	6p22.3		rs9460636-G	0.11	9E-6				Illumina [6724284] (imputed)	N
748	chr6	21471489	21471490	rs4269363	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	6p22.3	NR	rs4269363-G	NR	3E-10		1.044	[1.03-1.06]	Affymetrix, Illumina [29235255] (imputed)	N
749	chr6	21591888	21591889	rs6914724	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6p22.3	CDKAL1	rs6914724-?	NR	8E-6	(tauro deoxycholate)	1.8111054	[1.02-2.6] unit increase	Affymetrix [at least 2500000] (imputed)	N
749	chr6	21594704	21594705	rs190902899	34518561	Urbanek ME	2021-09-13	Sci Rep	Genetic predisposition to tinnitus in the UK Biobank population.	Tinnitus (chronic, bothersome)	300 female European ancestry cases, 11,732 female European ancestry controls	NA	6p22.3		rs190902899-?	NR	4E-6				IDT xGen Exome Sequencing Research Panel v1.0	N
749	chr6	21602551	21602552	rs1620996	34506852	Chang X	2021-09-07	J Allergy Clin Immunol	A genome-wide association meta-analysis identifies new Eosinophilic esophagitis loci.	Eosinophilic esophagitis	1,930 European ancestry cases, 13,634 European ancestry controls	NA	6p22.3	SOX4	rs1620996-T	0.117	3E-8		0.69	[0.59-0.78]	Illumina [11310926] (imputed)	N
750	chr6	21649084	21649085	rs1740828	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Endometrial cancer	2,188 European ancestry cases, 237,839 European ancestry controls, 1,200 East Asian ancestry cases, 60,614 East Asian ancestry controls	NA	6p22.3		rs1740828-A	NR	2E-9		0.1586	[0.11-0.21] unit decrease	Affymetrix, Illumina [25777865] (imputed)	N
750	chr6	21649084	21649085	rs1740828	30093612	O'Mara TA	2018-08-09	Nat Commun	Identification of nine new susceptibility loci for endometrial cancer.	Endometrial cancer (endometrioid histology)	8,758 European ancestry cases, 46,126 European ancestry controls	NA	6p22.3	SOX4	rs1740828-G	0.522413	6E-13		1.16	[1.11-1.20]	Affymetrix, Illumina [~ 11700000] (imputed)	N
750	chr6	21649084	21649085	rs1740828	30093612	O'Mara TA	2018-08-09	Nat Commun	Identification of nine new susceptibility loci for endometrial cancer.	Endometrial cancer	12,906 European ancestry cases, 108,979 European ancestry controls	NA	6p22.3	SOX4	rs1740828-G	0.52	4E-16		1.15	[1.11-1.19]	Affymetrix, Illumina [~ 11700000] (imputed)	N
750	chr6	21649084	21649085	rs1740828	27008869	Chen MM	2016-03-23	Hum Mol Genet	GWAS meta-analysis of 16 852 women identifies new susceptibility locus for endometrial cancer.	Endometrial cancer	4,907 European ancestry cases, 11,945 European ancestry controls	NA	6p22.3	SOX4, CASC15, CDKAL1	rs1740828-?	0.516	2E-8		1.2	[NR]	Illumina [9486271] (imputed)	N
750	chr6	21701082	21701083	rs6925119	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first birth	542,901 European ancestry individuals	NA	6p22.3	HIVEP2	rs6925119-A	0.8064	1E-8		0.0676	[0.044-0.091] unit decrease	NR [9744772] (imputed)	N
750	chr6	21722788	21722788	rs141007801	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	6p22.3	CASC15	rs141007801-CA	0.164902	1E-21		0.028726019	[0.023-0.035] unit increase	Affymetrix [93095623] (imputed)	N
750	chr6	21722788	21722788	rs141007801	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	6p22.3	CASC15	rs141007801-CA	0.1656	4E-13		0.0350592	[0.026-0.045] unit increase	Affymetrix [~ 2500000] (imputed)	N
750	chr6	21722788	21722788	rs141007801	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	6p22.3	CASC15	rs141007801-CA	0.1656	3E-10		0.03047058	[0.021-0.04] unit increase	Affymetrix [~ 2500000] (imputed)	N
750	chr6	21722915	21722916	rs9466161	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	6p22.3		rs9466161-C	NR	7E-19		0.028	[0.022-0.034] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
750	chr6	21722915	21722916	rs9466161	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	6p22.3		rs9466161-C	NR	6E-19		0.028	[0.022-0.034] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
750	chr6	21722915	21722916	rs9466161	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	6p22.3	CASC15	rs9466161-C	0.171141	5E-25		0.0305525	[0.025-0.036] unit increase	Affymetrix [93095623] (imputed)	N
750	chr6	21722915	21722916	rs9466161	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	6p22.3	CASC15	rs9466161-C	0.171156	3E-21		0.026769824	[0.021-0.032] unit increase	Affymetrix [93095623] (imputed)	N
750	chr6	21722915	21722916	rs9466161	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p22.3	NR	rs9466161-C	0.176875	9E-36				Affymetrix, Illumina [24246363] (imputed)	N
750	chr6	21722915	21722916	rs9466161	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	6p22.3	NR	rs9466161-C	0.171075	4E-39		0.03145	[0.027-0.036] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
750	chr6	21722915	21722916	rs9466161	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p22.3	NR	rs9466161-C	0.176892	6E-26				Affymetrix, Illumina [20825802] (imputed)	N
750	chr6	21722915	21722916	rs9466161	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	6p22.3	NR	rs9466161-C	0.170741	3E-29		0.028611	[0.024-0.034] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
750	chr6	21722915	21722916	rs9466161	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	6p22.3		rs9466161-?	NR	2E-29				NR [~ 8900000] (imputed)	N
750	chr6	21722969	21722970	rs116239840	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6p22.3	CASC15	rs116239840-C	0.170051	2E-16		0.024005178	[0.018-0.03] unit increase	Affymetrix [93095623] (imputed)	N
750	chr6	21723620	21723621	rs9460664	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	6p22.3	CASC15	rs9460664-A	0.199931	2E-11		0.018202407	[0.013-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
750	chr6	21724669	21724670	rs6926491	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	6p22.3		rs6926491-?	NR	1E-18				NR [~ 8900000] (imputed)	N
751	chr6	21795786	21795787	rs76088467	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Bladder cancer	2,242 European ancestry cases, 410,350 European ancestry controls	NA	6p22.3		rs76088467-G	0.024718	2E-8		1.5588465	NR	Affymetrix [7846216] (imputed)	N
751	chr6	21806788	21806789	rs7762532	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	6p22.3	CASC15	rs7762532-C	0.805086	5E-9		0.0135737	[0.009-0.0181] unit decrease	NR [13737936] (imputed)	N
751	chr6	21806788	21806789	rs7762532	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p22.3		rs7762532-?	NR	8E-13		0.018944	[0.014-0.024] unit decrease	Affymetrix [20259828] (imputed)	N
751	chr6	21809194	21809195	rs73735248	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	6p22.3		rs73735248-T	NR	3E-12		0.0191	[0.014-0.024] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
751	chr6	21809194	21809195	rs73735248	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p22.3		rs73735248-C	0.841	6E-12				Affymetrix [10369434] (imputed)	N
751	chr6	21809194	21809195	rs73735248	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p22.3	CASC15	rs73735248-T	0.158409	9E-16		0.024154937	[0.018-0.03] unit increase	Affymetrix [93095623] (imputed)	N
751	chr6	21809194	21809195	rs73735248	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	6p22.3	CASC15	rs73735248-T	0.1587	2E-9		0.03006758	[0.02-0.04] unit increase	Affymetrix [~ 2500000] (imputed)	N
751	chr6	21811330	21811331	rs1199350	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	6p22.3	NR	rs1199350-T	0.467348	1E-10		0.0203331	[0.014-0.027] unit decrease	NR [19129689] (imputed)	N
751	chr6	21819215	21819216	rs2770102	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	6p22.3	LINC00340	rs2770102-G	0.459	5E-6	(EA)	0.014	[0.008-0.0202] kg/m2 increase	Affymetrix, Illumina [2550021]	N
751	chr6	21824393	21824394	rs2479808	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	6p22.3	LOC729161, LOC729177	rs2479808-A	0.001	1E-6		34.08	[3.52-329.69]	Illumina [1556551]	N
751	chr6	21835656	21835656	rs34061913	28272467	Heilmann-Heimbach S	2017-03-08	Nat Commun	Meta-analysis identifies novel risk loci and yields systematic insights into the biology of male-pattern baldness.	Male-pattern baldness	10,846 European ancestry cases, 11,672 European ancestry controls	NA	6p22.3		rs34061913-T	0.1	3E-8		0.2	[0.12-0.28] unit decrease	Affymetrix, Illumina [8004650] (imputed)	N
751	chr6	21867704	21867705	rs112204664	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Respiratory diseases	approximately 459,000 European ancestry individuals	NA	6p22.3		rs112204664-?	NR	5E-9				NR [~ 8900000] (imputed)	N
751	chr6	21878848	21878849	rs12665509	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	6p22.3	NR	rs12665509-A	NR	3E-9		1.041	[1.03-1.06]	Affymetrix, Illumina [29235255] (imputed)	N
751	chr6	21884439	21884440	rs952579	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	6p22.3	CASC15	rs952579-A	0.14	7E-9				NR [> 9500000] (imputed)	N
751	chr6	21884439	21884440	rs952579	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	6p22.3	CASC15	rs952579-A	0.14090999999999998	2E-9		1.0526516	[1.03506473248894-1.07053747171829]	NR [9572556] (imputed)	N
751	chr6	21886488	21886489	rs74360995	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	6p22.3		rs74360995-?	NR	5E-8				NR [~ 8900000] (imputed)	N
751	chr6	21888516	21888517	rs74971894	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	6p22.3		rs74971894-?	NR	4E-35				NR [~ 8900000] (imputed)	N
751	chr6	21888516	21888517	rs74971894	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p22.3		rs74971894-?	NR	4E-40		0.0426314	[0.036-0.049] unit increase	Affymetrix [20259828] (imputed)	N
751	chr6	21888516	21888517	rs74971894	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	6p22.3	CASC15	rs74971894-A	0.884591	5E-10	(men)	0.0498505	[0.034-0.065] unit increase	NR [17166351] (imputed)	N
751	chr6	21888516	21888517	rs74971894	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	6p22.3	CASC15	rs74971894-A	0.884286	1E-15		0.0421269	[0.032-0.052] unit increase	NR [17166351] (imputed)	N
751	chr6	21888516	21888517	rs74971894	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	6p22.3	CASC15	rs74971894-A	0.884021	8E-8	(women)	0.0376362	[0.024-0.052] unit increase	NR [17166351] (imputed)	N
752	chr6	21890411	21890412	rs185628618	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-6 levels	8,189 Finnish ancestry individuals	NA	6p22.3	NR	rs185628618-G	NR	3E-6		0.2663	[0.15-0.38] SD units increase	NR [10700000] (imputed)	N
752	chr6	21891575	21891576	rs78432519	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	6p22.3	CASC15	rs78432519-C	0.88714	6E-34		0.0351771	[0.029-0.041] unit increase	NR [13737936] (imputed)	N
752	chr6	21903532	21903533	rs7760611	32424353	Zhang H	2020-05-18	Nat Genet	Genome-wide association study identifies 32 novel breast cancer susceptibility loci from overall and subtype-specific analyses.	Invasive breast cancer	106,278 European ancestry cases, 91,477 European ancestry controls	NA	6p22.3	NR	rs7760611-?	NR	2E-9	(mixed effect)			Illumina [~ 9700000] (imputed)	N
752	chr6	21903532	21903533	rs7760611	32424353	Zhang H	2020-05-18	Nat Genet	Genome-wide association study identifies 32 novel breast cancer susceptibility loci from overall and subtype-specific analyses.	Breast cancer	133,384 European ancestry cases, 113,789 European ancestry controls	NA	6p22.3	NR	rs7760611-C	0.53	2E-9		1.0416667	[1.02-1.05]	Illumina [~ 10800000] (imputed)	N
752	chr6	21905725	21905726	rs9350395	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p22.3	NR	rs9350395-G	0.5936	3E-7	(EA)	0.0323	[0.02-0.045] unit increase	Illumina [~ 11800000] (imputed)	N
752	chr6	21912631	21912632	rs9368368	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Longevity	up to 482,000 European ancestry individuals	NA	6p22.3	NR	rs9368368-G	NR	3E-7		0.01323	[0.0082-0.0183] unit decrease	Illumina [~ 540852]	N
752	chr6	21917558	21917561	rs759340662	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	6p22.3		rs759340662-T	NR	2E-12		0.0178	[0.013-0.023] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
752	chr6	21919386	21919387	rs7760082	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	6p22.3		rs7760082-A	NR	3E-8		0.0135	[0.0088-0.0182] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
752	chr6	21919386	21919387	rs7760082	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	6p22.3		rs7760082-?	NR	4E-9				NR [~ 8900000] (imputed)	N
752	chr6	21921025	21921026	rs6934973	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	6p22.3	NA	rs6934973-A	0.7028	4E-10		0.0117	[0.008-0.0154] unit decrease	NR [~ 27400000] (imputed)	N
752	chr6	21921475	21921476	rs6935891	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	6p22.3		rs6935891-?	NR	8E-19				NR [~ 8900000] (imputed)	N
752	chr6	21921475	21921476	rs6935891	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	6p22.3	NR	rs6935891-G	0.149502	3E-17		0.0392784	[0.03-0.048] unit decrease	NR [19129689] (imputed)	N
752	chr6	21921973	21921974	rs9368375	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	6p22.3	NR	rs9368375-G	0.424178	2E-16		0.0274453	[0.021-0.034] unit increase	NR [19129689] (imputed)	N
752	chr6	21924163	21924164	rs10946488	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Aspartate aminotransferase levels	386,570 British ancestry individuals, 10,617 Asian or Asian British individuals, 7,426 Black or Black British individuals, 2,321 Chinese ancestry individuals	NA	6p22.3	SOX4	rs10946488-?	NR	1E-10		0.0018	[0.0012-0.0024] unit decrease	Affymetrix [21347608] (imputed)	N
752	chr6	21924163	21924164	rs10946488	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Alanine aminotransferase levels	387,859 British ancestry individuals, 10,635 Asian or Asian British individuals, 7,468 Black or Black British individuals, 2,338 Chinese ancestry individuals	NA	6p22.3	SOX4	rs10946488-?	NR	1E-12		0.003	[0.002-0.004] unit decrease	Affymetrix [21347608] (imputed)	N
752	chr6	21924325	21924326	rs12190285	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	6p22.3		rs12190285-G	NR	8E-55		0.0378	[0.033-0.043] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
752	chr6	21924325	21924326	rs12190285	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	6p22.3	NBAT1	rs12190285-T	0.705234	2E-71		0.00996516	[0.0089-0.0111] unit increase	Affymetrix [13995440] (imputed)	N
752	chr6	21928130	21928131	rs17258904	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	6p22.3		rs17258904-G	NR	7E-12		0.0174	[0.012-0.022] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
752	chr6	21939327	21939328	rs6938097	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	6p22.3	SOX4, PRL	rs6938097-G	0.72	4E-10		6.25	z-score increase	Affymetrix [4314223] (imputed)	N
752	chr6	21939327	21939328	rs6938097	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	6p22.3	SOX4, PRL	rs6938097-G	0.72	2E-11		6.68	z-score increase	Affymetrix [4312306] (imputed)	N
752	chr6	21949063	21949064	rs67258057	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	6p22.3	CASC15	rs67258057-A	NR	1E-8		0.034455664	[0.023-0.046] unit decrease	Affymetrix [NR]	N
752	chr6	21950970	21950971	rs6927510	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	6p22.3	NR	rs6927510-C	NR	5E-10		0.0149	[0.01-0.02] unit decrease	Affymetrix [9000000] (imputed)	N
752	chr6	21956403	21956404	rs6903716	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	6p22.3	NR	rs6903716-A	0.287276	6E-9		0.04040829	[0.027-0.054] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
752	chr6	21956403	21956404	rs6903716	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	6p22.3	Intergenic	rs6903716-A	0.7098	2E-8	(MTAG)	0.0141	[0.0092-0.019] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
752	chr6	21956403	21956404	rs6903716	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	6p22.3	Intergenic	rs6903716-A	0.7098	5E-9		0.0184	[0.012-0.024] unit increase	Affymetrix, Illumina [10100000] (imputed)	N
752	chr6	21956403	21956404	rs6903716	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	6p22.3	NR	rs6903716-A	NR	2E-9		5.969	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
752	chr6	21960064	21960065	rs7763264	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.3	CASC15	rs7763264-T	NR	4E-8		5.487	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
752	chr6	21963003	21963004	rs115721567	34162658	Quinn MC	2021-06-23	Cancer Epidemiol Biomarkers Prev	Identification of a locus near ULK1 associated with progression-free survival in ovarian cancer.	Progression free survival in epithelial ovarian cancer treated with carboplatin and paclitaxel	2,352 European ancestry individuals	NA	6p22.3	NR	rs115721567-T		9E-6		0.4018	[0.22-0.58] unit increase	Illumina [12764477] (imputed)	N
752	chr6	21965581	21965582	rs193184008	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs non-severe)	86 Finnish ancestry male severe erosion cases, 50 Finnish ancestry female severe erosion cases, 817 Finnish ancestry male non-severe erosion controls, 991 Finnish ancestry female non-severe erosion controls	NA	6p22.3	NR	rs193184008-?	NR	8E-6				Illumina [NR] (imputed)	N
752	chr6	21966636	21966637	rs62402518	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in ever smokers	23,223 European ancestry cases,  16,964 European ancestry controls	NA	6p22.3	CASC15	rs62402518-C	0.93584303	8E-6		1.1517986	[1.08-1.23]	Illumina [10439017] (imputed)	N
752	chr6	21983815	21983816	rs7768772	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6p22.3	SOX4	rs7768772-?	NR	3E-6	(PC 36:4)	0.23263456	[0.14-0.33] unit decrease	Affymetrix [at least 2500000] (imputed)	N
752	chr6	21996859	21996860	rs2078543	23284291	Hancock DB	2012-12-20	PLoS Genet	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (smoking interaction)	50,047 European ancestry individuals	NA	6p22.3	SOX4, PRL	rs2078543-A	NR	2E-7	(FEV1/FVC, Pack-years)			NR [~ 2500000] (imputed)	N
752	chr6	22004908	22004909	rs13198656	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	6p22.3	PRL	rs13198656-T	0.56	1E-9		1.06	[1.04-1.08]	Affymetrix, Illumina [6224355] (imputed)	N
752	chr6	22016008	22016009	rs62404667	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	6p22.3		rs62404667-?	NR	5E-54				NR [~ 8900000] (imputed)	N
752	chr6	22017542	22017543	rs13198081	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	6p22.3	CASC15	rs13198081-C	0.3532	4E-8		0.0145	[0.0094-0.0196] unit increase	Affymetrix [19819130] (imputed)	N
752	chr6	22017542	22017543	rs13198081	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	6p22.3	CASC15	rs13198081-C	0.3532	3E-33		0.0297	[0.025-0.035] unit increase	Affymetrix [19819130] (imputed)	N
752	chr6	22017737	22017738	rs1928168	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FEV1/FVC)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		6p22.3	LINC00340	rs1928168-T	0.51	7E-14	(EA)	0.003	[0.0022-0.0038] unit increase	Affymetrix, Illumina [10900000] (imputed)	N
752	chr6	22017737	22017738	rs1928168	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FEV1)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		6p22.3		rs1928168-?	NR	6E-6	(EA)	12.52	[7.09-17.95] unit increase	Affymetrix, Illumina [10900000] (imputed)	N
752	chr6	22017737	22017738	rs1928168	23284291	Hancock DB	2012-12-20	PLoS Genet	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (smoking interaction)	50,047 European ancestry individuals	NA	6p22.3	SOX4, PRL	rs1928168-T	NR	2E-7	(FEV1/FVC, Ever-smoking)			NR [~ 2500000] (imputed)	N
752	chr6	22017737	22017738	rs1928168	21946350	Soler Artigas M	2011-09-25	Nat Genet	Genome-wide association and large-scale follow up identifies 16 new loci influencing lung function.	Pulmonary function	48,201 European ancestry individuals	46,411 European ancestry individuals	6p22.3	AK026189	rs1928168-T	NR	2E-7	(FEV1/FVC)	0.028	[0.018-0.038] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
753	chr6	22021372	22021373	rs9350408	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FEV1/FVC)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		6p22.3	LINC00340	rs9350408-T	0.54	1E-11	(EA)	0.003	[0.0022-0.0038] unit decrease	Affymetrix, Illumina [10900000] (imputed)	N
753	chr6	22021372	22021373	rs9350408	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FEV1/FVC)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		6p22.3	LINC00340	rs9350408-T	0.51	7E-14		0.003	[0.0024-0.0036] unit decrease	Affymetrix, Illumina [10900000] (imputed)	N
753	chr6	22056922	22056923	rs2294214	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	6p22.3		rs2294214-C	NR	7E-9		0.0132	[0.0087-0.0177] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
753	chr6	22056922	22056923	rs2294214	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6p22.3		rs2294214-?	NR	7E-9		1.06892	[1.05-1.09]	NR [685523]	N
753	chr6	22056922	22056923	rs2294214	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	6p22.3		rs2294214-?	NR	4E-12				NR [~ 8900000] (imputed)	N
753	chr6	22056922	22056923	rs2294214	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6p22.3		rs2294214-?	NR	4E-20				NR [~ 8900000] (imputed)	N
753	chr6	22056922	22056923	rs2294214	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	6p22.3		rs2294214-?	NR	2E-8				NR [~ 8900000] (imputed)	N
753	chr6	22056922	22056923	rs2294214	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Non-melanoma skin cancer	5,912 European ancestry cases, 181,740 European ancestry controls		6p22.3	NR	rs2294214-A	NR	2E-6		1.0989193	[1.06-1.14]	Affymetrix [5734850] (imputed)	N
753	chr6	22056922	22056923	rs2294214	27539887	Chahal HS	2016-08-19	Nat Commun	Genome-wide association study identifies 14 novel risk alleles associated with basal cell carcinoma.	Basal cell carcinoma	12.945 European ancestry cases, 274,252 European ancestry controls	4,242 European ancestry cases, 12,802 European ancestry controls	6p22.3	CASC15	rs2294214-C	0.32	3E-8		1.07	[NR]	Illumina [at least 560000] (imputed)	N
753	chr6	22057199	22057200	rs196052	30306274	Shah RL	2018-10-10	Hum Genet	Genome-wide association studies for corneal and refractive astigmatism in UK Biobank demonstrate a shared role for myopia susceptibility loci.	Corneal astigmatism	Up to 86,335 European ancestry individuals		6p22.3	LINC00340	rs196052-T	0.622	8E-11		0.019	[0.013-0.025] dioptres increase	NR [5901671] (imputed)	N
753	chr6	22057565	22057566	rs55775505	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Skin cancer	25,928 European ancestry cases, 466,275 European ancestry controls, 154 East Asian ancestry cases, 178,572 East Asian ancestry controls	NA	6p22.3		rs55775505-T	NR	2E-9		0.0622	[0.042-0.082] unit increase	Affymetrix, Illumina [25845421] (imputed)	N
753	chr6	22057565	22057566	rs55775505	33549134	Adolphe C	2021-02-06	Genome Med	Genetic and functional interaction network analysis reveals global enrichment of regulatory T cell genes influencing basal cell carcinoma susceptibility.	Basal cell carcinoma	17,416 European ancestry cases, 375,455 European ancestry controls	NA	6p22.3	CASC15	rs55775505-T	0.313859	9E-18		0.099140294	[0.077-0.122] unit increase	Affymetrix [7260263] (imputed)	N
753	chr6	22057565	22057566	rs55775505	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Keratinocyte cancer (MTAG)	at least 18,538 European ancestry cases, at least 340,302 European ancestry controls	NA	6p22.3	RN7SKP240	rs55775505-T	0.313796	4E-16		1.08	[1.06-1.10]	Affymetrix [7600000] (imputed)	N
753	chr6	22057565	22057566	rs55775505	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Basal cell carcinoma	31,787 European ancestry cases, 619,351 European ancestry controls	NA	6p22.3	RN7SKP240	rs55775505-T	0.296982	5E-20		1.09	[1.07-1.10]	Affymetrix, Illumina [up to 9061544] (imputed)	N
753	chr6	22059966	22059967	rs1207782	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	6p22.3	LINC00340	rs1207782-T	0.5768	2E-15		7.915	[NR] z score decrease	Affymetrix, Illumina [~ 11000000] (imputed)	N
753	chr6	22061039	22061040	rs411535	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Myopia (age of diagnosis)	104,293 European ancestry individuals	NA	6p22.3	NR	rs411535-A	0.611	3E-9		0.0429	[0.029-0.057] unit decrease	Illumina [~ 10600000] (imputed)	N
753	chr6	22064638	22064639	rs9366426	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	35,422 individuals (>=25 years old)	NA	6p22.3		rs9366426-T	NR	9E-8		0.0128	[0.0083-0.0173] mm increase	Affymetrix, Illumina [8936601] (imputed)	N
753	chr6	22064638	22064639	rs9366426	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	29,580 European ancestry individuals, 14,462 Asian ancestry individuals	88,218 European ancestry individuals	6p22.3		rs9366426-T	0.43	5E-37		0.013	mm increase	Affymetrix, Illumina [8936601] (imputed)	N
753	chr6	22064638	22064639	rs9366426	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	29,580 European ancestry individuals	NA	6p22.3		rs9366426-T	0.44	2E-8		0.014	mm increase	Affymetrix, Illumina [8936601] (imputed)	N
753	chr6	22067278	22067279	rs9350413	32528159	Choquet H	2020-06-11	Commun Biol	A multiethnic genome-wide analysis of 44,039 individuals identifies 41 new loci associated with central corneal thickness.	Central corneal thickness	32,292 European ancestry individuals, 9,623 East Asian ancestry individuals, 1,367 Hispanic/Latino individuals, 757 African American  individuals	NA	6p22.3	LINC00340	rs9350413-?	NA	3E-8		1.42	[0.93-1.91] unit decrease	Affymetrix [5541230] (imputed)	N
753	chr6	22068173	22068174	rs4145443	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	6p22.3	CASC15	rs4145443-G	0.435517	3E-13		0.016317919	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
753	chr6	22068173	22068174	rs4145443	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	6p22.3	NR	rs4145443-G		3E-21		0.11	[0.09-0.13] unit increase	NR [NR]	N
753	chr6	22068173	22068174	rs4145443	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	6p22.3	CDKAL1, PRL, HDGFL1	rs4145443-?		6E-38				Affymetrix, Illumina [NR] (imputed)	N
753	chr6	22074192	22074193	rs10946506	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	145,648 East Asian ancestry individuals	NA	6p22.3	NR	rs10946506-C	0.346978	2E-16		0.032107	[0.024-0.04] SD units increase	Affymetrix, Illumina [16710488] (imputed)	N
753	chr6	22075261	22075262	rs10484389	25705159	Hong Y	2014-12-31	Genomics Inform	Genome-wide association study of hepatitis in korean populations.	Hepatitis	1,500 Korean ancestry cases, 1,500 Korean ancestry controls	NA	6p22.3	CASC15	rs10484389-T	NR	2E-8		1.18	[NR]	NR [352000]	N
753	chr6	22078614	22078615	rs4712652	19151714	Meyre D	2009-01-18	Nat Genet	Genome-wide association study for early-onset and morbid adult obesity identifies three new risk loci in European populations.	Obesity	695 European ancestry adult cases, 731 European ancestry adult controls, 685 European ancestry child cases, 685 European ancestry child controls	1,171 European ancestry adult cases, 1,114 European ancestry adult controls, 4,417 European ancestry adults, 896 European ancestry child cases, 1,297 European ancestry child and young adult controls, 5,291 European ancestry children	6p22.3	PRL	rs4712652-A	0.55	3E-7	(adults)	1.2	[1.02-1.47]	Illumina [308846]	N
753	chr6	22079484	22079485	rs1928175	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p22.3	CASC15	rs1928175-A	0.561272	6E-13		0.015965495	[0.012-0.02] unit increase	Affymetrix [93095623] (imputed)	N
753	chr6	22079484	22079485	rs1928175	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	6p22.3	CASC15	rs1928175-A	0.561279	8E-10		0.01368807	[0.0093-0.0181] unit increase	Affymetrix [93095623] (imputed)	N
753	chr6	22079484	22079485	rs1928175	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	6p22.3		rs1928175-?	NR	3E-12				NR [~ 8900000] (imputed)	N
753	chr6	22082262	22082263	rs12196123	30306274	Shah RL	2018-10-10	Hum Genet	Genome-wide association studies for corneal and refractive astigmatism in UK Biobank demonstrate a shared role for myopia susceptibility loci.	Refractive astigmatism	88,005 European ancestry individuals		6p22.3	LINC00340	rs12196123-T	NR	1E-11		0.022	[0.016-0.028] dioptres decrease	NR [5900115] (imputed)	N
753	chr6	22087073	22087074	rs12212674	25367360	Li Q	2014-11-04	Hum Genet	Genome-wide association study for refractive astigmatism reveals genetic co-determination with spherical equivalent refractive error: the CREAM consortium.	Refractive astigmatism	8,487 European ancestry cases aged 25 years or older, 23,481 European ancestry controls aged 25 years or older, 907 European ancestry cases aged less than 25 years, 4,733 European ancestry controls aged less than 25 years, 3,076 Asian ancestry cases aged 25 years or older, 6,219 Asian ancestry controls aged 25 years or older, 247 Chinese ancestry cases aged less than 25 years, 670 Chinese ancestry controls aged less than 25 years	NA	6p22.3	LINC00340	rs12212674-A	0.496	1E-6	(EA, 25 years or older)	1.099	[1.058-1.142]	Affymetrix, Illumina [NR] (imputed)	N
753	chr6	22087073	22087074	rs12212674	25367360	Li Q	2014-11-04	Hum Genet	Genome-wide association study for refractive astigmatism reveals genetic co-determination with spherical equivalent refractive error: the CREAM consortium.	Refractive astigmatism	8,487 European ancestry cases aged 25 years or older, 23,481 European ancestry controls aged 25 years or older, 907 European ancestry cases aged less than 25 years, 4,733 European ancestry controls aged less than 25 years, 3,076 Asian ancestry cases aged 25 years or older, 6,219 Asian ancestry controls aged 25 years or older, 247 Chinese ancestry cases aged less than 25 years, 670 Chinese ancestry controls aged less than 25 years	NA	6p22.3	LINC00340	rs12212674-A	0.134	1E-6		1.086	[1.050-1.123]	Affymetrix, Illumina [NR] (imputed)	N
753	chr6	22100366	22100367	rs10946507	30306274	Shah RL	2018-10-10	Hum Genet	Genome-wide association studies for corneal and refractive astigmatism in UK Biobank demonstrate a shared role for myopia susceptibility loci.	Refractive astigmatism	70,505 European ancestry cases, 17,500 European ancestry controls	NA	6p22.3	LINC00340	rs10946507-G	NR	2E-9		1.0752687	[1.05-1.1]	NR [5919636] (imputed)	N
753	chr6	22100366	22100367	rs10946507	27020472	Fan Q	2016-03-29	Nat Commun	Meta-analysis of gene-environment-wide association scans accounting for education level identifies additional loci for refractive error.	Spherical equivalent (joint analysis main effects and education interaction)	2,604 Erasmus Rucphen population isolate individuals, 456 Sardinian population isolate individuals, 36,976 European ancestry individuals, 5,971 East Asian ancestry individuals, 2,256 Malay ancestry individuals, 2,088 Indian ancestry individuals	NA	6p22.3	LINC00340	rs10946507-A	0.47	3E-8	(European ancestry)			Affymetrix, Illumina [up to 7331415] (imputed)	N
753	chr6	22100366	22100367	rs10946507	27020472	Fan Q	2016-03-29	Nat Commun	Meta-analysis of gene-environment-wide association scans accounting for education level identifies additional loci for refractive error.	Spherical equivalent (joint analysis main effects and education interaction)	2,604 Erasmus Rucphen population isolate individuals, 456 Sardinian population isolate individuals, 36,976 European ancestry individuals, 5,971 East Asian ancestry individuals, 2,256 Malay ancestry individuals, 2,088 Indian ancestry individuals	NA	6p22.3	LINC00340	rs10946507-A	0.47	2E-8				Affymetrix, Illumina [up to 7331415] (imputed)	N
753	chr6	22100911	22100912	rs9393227	35079123	Chambers T	2022-01-25	Mol Psychiatry	Genetic common variants associated with cerebellar volume and their overlap with mental disorders: a study on 33,265 individuals from the UK-Biobank.	Total cerebellar volume (excluding Crus I vermis)	33,265 European ancestry individuals	NA	6p22.3		rs9393227-A	NR	2E-8		0.0312	[0.02-0.042] unit increase	Affymetrix [6193476] (imputed)	N
753	chr6	22102442	22102443	rs964461	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent	41,073 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	6p22.3	NR	rs964461-A	0.4667	1E-8	(EA)	0.087	[0.057-0.117] unit decrease	Affymetrix, Illumina [~ 9300000] (imputed)	N
753	chr6	22102442	22102443	rs964461	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent	41,073 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	6p22.3	NR	rs964461-A	0.4366	1E-9		0.0864	[0.059-0.114] unit decrease	Affymetrix, Illumina [~ 9300000] (imputed)	N
753	chr6	22108425	22108426	rs9358488	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	6p22.3		rs9358488-T	NR	4E-18		0.0294	[0.023-0.036] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
753	chr6	22108425	22108426	rs9358488	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	6p22.3		rs9358488-T	0.539842	3E-17		0.0289745	[0.022-0.036] unit decrease	Illumina [13478928] (imputed)	N
753	chr6	22109401	22109401	rs78381359	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	6p22.3	CASC15	rs78381359-CCAAT	0.394532	3E-17		0.018973472	[0.015-0.023] unit increase	Affymetrix [93095623] (imputed)	N
753	chr6	22109405	22109405	rs397816721	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	6p22.3		rs397816721-CCAAT	NR	5E-17		0.0161	[0.012-0.02] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
753	chr6	22109405	22109405	rs397816721	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	6p22.3		rs397816721-CCAAT	NR	3E-15		0.0146	[0.011-0.018] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
753	chr6	22111147	22111148	rs3736675	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Platelet count	108,208 Japanese ancestry individuals	NA	6p22.3	CASC15	rs3736675-?	NR	8E-14		0.07432	[0.055-0.094] unit increase novel	Illumina [6108953] (imputed)	N
753	chr6	22113797	22113798	rs16885624	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6p22.3	HDGFL1	rs16885624-?	NR	7E-6	(TAG 58:7)	0.41288048	[0.23-0.59] unit increase	Affymetrix [at least 2500000] (imputed)	N
753	chr6	22125156	22125157	rs9368402	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (anilides)	83,218 European ancestry cases, 96,592 European ancestry controls, 4,421 East Asian ancestry cases, 174,305 East Asian ancestry controls	NA	6p22.3		rs9368402-T	NR	1E-8		0.0363	[0.024-0.049] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
753	chr6	22125156	22125157	rs9368402	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	6p22.3	NR	rs9368402-T	0.455837	1E-21		0.017656	[0.014-0.021] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
753	chr6	22125156	22125157	rs9368402	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (anilides)	83,218 European ancestry cases, 96,592 European ancestry controls	NA	6p22.3	RP1-67M12.2	rs9368402-T	0.453647	5E-9		0.038428664	[0.026-0.051] unit decrease	Affymetrix [7288503] (imputed)	N
753	chr6	22125963	22125964	rs4712653	28924153	Chang X	2017-09-18	Nat Commun	Common variants in MMP20 at 11q22.2 predispose to 11q deletion and neuroblastoma risk.	Neuroblastoma (MYCN amplification)	260 European ancestry cases, 5,109 European ancestry controls	NA	6p22.3	CASC15	rs4712653-C	NR	1E-11		1.858		Illumina [NR]	N
753	chr6	22125963	22125964	rs4712653	28924153	Chang X	2017-09-18	Nat Commun	Common variants in MMP20 at 11q22.2 predispose to 11q deletion and neuroblastoma risk.	Neuroblastoma (1p deletion)	69 European ancestry cases, 5,109 European ancestry controls	NA	6p22.3	CASC15	rs4712653-C	NR	6E-8		2.674		Illumina [NR]	N
753	chr6	22125963	22125964	rs4712653	21124317	Wang K	2010-12-01	Nature	Integrative genomics identifies LMO1 as a neuroblastoma oncogene.	Neuroblastoma	1,627 European ancestry child cases, 3,254 European ancestry child controls	624 European ancestry child cases, 2,843 European ancestry child controls	6p22.3	FLJ22536, FLJ44180	rs4712653-C	0.46	8E-17		1.4	[NR]	Illumina [480279]	N
753	chr6	22128461	22128462	rs6899545	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p22.3	intergenic	rs6899545-A		1E-12		0.016	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
753	chr6	22130600	22130601	rs6911827	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	6p22.3	CASC15	rs6911827-T	0.455242	7E-22		0.021172842	[0.017-0.025] unit increase	Affymetrix [93095623] (imputed)	N
753	chr6	22130600	22130601	rs6911827	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	6p22.3	CASC15	rs6911827-T	0.455227	2E-22		0.021456229	[0.017-0.026] unit increase	Affymetrix [93095623] (imputed)	N
753	chr6	22130600	22130601	rs6911827	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	6p22.3	NR	rs6911827-T	0.456378	5E-23		0.018256	[0.015-0.022] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
753	chr6	22130600	22130601	rs6911827	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	6p22.3		rs6911827-?	NR	1E-15				NR [~ 8900000] (imputed)	N
753	chr6	22130600	22130601	rs6911827	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Systolic blood pressure	140,882 European ancestry individuals	190,318 European ancestry individuals	6p22.3	CASC15	rs6911827-T	0.45	2E-10		0.296	[0.2-0.39] unit increase	Affymetrix [~ 9800000] (imputed)	N
753	chr6	22131928	22131929	rs9295536	22941191	Diskin SJ	2012-09-02	Nat Genet	Common variation at 6q16 within HACE1 and LIN28B influences susceptibility to neuroblastoma.	Neuroblastoma	2,101 European ancestry cases, 4,202 European ancestry controls	351 European ancestry cases, 780 European ancestry controls, 365 African American cases, 2,491 African American controls	6p22.3	LINC00340, FLJ44180	rs9295536-A	0.430	8E-16		1.357	[NR]	Illumina [426697]	N
753	chr6	22136159	22136160	rs6915322	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p22.3	NR	rs6915322-T	0.505045	1E-20				Affymetrix, Illumina [24332387] (imputed)	N
753	chr6	22136159	22136160	rs6915322	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p22.3	NR	rs6915322-T	0.502775	5E-21				Affymetrix, Illumina [24558453] (imputed)	N
753	chr6	22136261	22136262	rs4712656	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	6p22.3		rs4712656-C	NR	4E-15		0.0129	[0.0098-0.016] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
753	chr6	22136261	22136262	rs4712656	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p22.3	NR	rs4712656-C	0.502745	6E-20				Affymetrix, Illumina [24653286] (imputed)	N
753	chr6	22136261	22136262	rs4712656	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	6p22.3		rs4712656-?	NR	8E-20				NR [~ 8900000] (imputed)	N
753	chr6	22136261	22136262	rs4712656	28545128	McDaniel LD	2017-05-18	PLoS Genet	Common variants upstream of MLF1 at 3q25 and within CPZ at 4p16 associated with neuroblastoma.	Sporadic neuroblastoma	2,101 European ancestry child cases, 4,202 European ancestry controls	365 African American child cases, 2,491 African American controls, 427 European ancestry cases, 783 European ancestry controls, 371 cases, 1,122 controls	6p22.3	CASC15	rs4712656-C	0.44737	8E-16	(European American)	1.37	[1.27-1.47]	Illumina [7968453] (imputed)	N
753	chr6	22136261	22136262	rs4712656	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	6p22.3	LINC00340/LOC729177	rs4712656-G		3E-9		0.227	unit decrease	Affymetrix [at least 2696785] (imputed)	N
753	chr6	22136261	22136262	rs4712656	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	6p22.3	LINC00340/LOC729177	rs4712656-G		1E-7		0.124	unit decrease	Affymetrix [at least 2696785] (imputed)	N
753	chr6	22140003	22140004	rs6939340	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	6p22.3		rs6939340-G	NR	2E-9		0.0115	[0.0078-0.0152] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
753	chr6	22140003	22140004	rs6939340	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	6p22.3	NR	rs6939340-G	0.478038	1E-20		0.017135	[0.014-0.021] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
753	chr6	22140003	22140004	rs6939340	18463370	Maris JM	2008-05-09	N Engl J Med	Chromosome 6p22 locus associated with clinically aggressive neuroblastoma.	Neuroblastoma	1,032 European ancestry cases, 2,043 European ancestry controls	720 European ancestry cases, 2,128 European ancestry controls	6p22.3	FLJ22536, FLJ44180	rs6939340-G	0.50	9E-15		1.37	[1.27-1.49]	Illumina [464934]	N
754	chr6	22162502	22162503	rs9348501	34838041	Naderi E	2021-11-27	J Transl Med	A two-stage genome-wide association study of radiation-induced acute toxicity in head and neck cancer.	radiation-induced toxicity (standardized total average toxicity_patient)	881 Dutch ancestry individuals	241 Dutch ancestry individuals	6p22.3		rs9348501-A	NR	1E-5		0.2207068	[0.12-0.32] decrease	Illumina [6334277] (imputed)	N
754	chr6	22177920	22177921	rs182178320	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	6p22.3	NR	rs182178320-?	NR	7E-6		12.519	NR unit decrease	Affymetrix [at least 600000] (imputed)	N
754	chr6	22186681	22186682	rs35806880	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		CASC15	rs35806880-?	NR	3E-12	(male)	3.28007	[NR] unit decrease	Affymetrix [NR] (imputed)	N
754	chr6	22210554	22210555	rs10946536	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 5 levels	252 European ancestry individuals	NA	6p22.3		rs10946536-A	NR	6E-6		0.14161	[0.082-0.202] unit increase	Illumina [NR] (imputed)	N
754	chr6	22219103	22219106	rs574212135	34469433	Ashvetiya T	2021-09-01	PLoS One	Identification of novel genetic susceptibility loci for thoracic and abdominal aortic aneurysms via genome-wide association study using the UK Biobank Cohort.	Thoracic aortic aneurysms	435 European, Indian, Caribbean, African ancestry cases, 8,700 European, Indian, Caribbean, African ancestry ancestry controls	NA	6p22.3		rs574212135-?	NR	3E-7		4.06724		NR [NR] (imputed)	N
754	chr6	22246603	22246604	rs4236016	21348951	Parsa A	2011-02-01	Clin Transl Sci	Hypertrophy-associated polymorphisms ascertained in a founder cohort applied to heart failure risk and mortality.	Cardiac hypertrophy	851 Old Order Amish individuals	NA	6p22.3	SOX4	rs4236016-?	NR	4E-6	(additive, recessive)			Affymetrix [361034]	N
754	chr6	22270119	22270120	rs2066266	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	6p22.3		rs2066266-?	NR	5E-8				Affymetrix [NR] (imputed)	N
755	chr6	22304203	22304204	rs1341239	21623375	Albagha OM	2011-05-29	Nat Genet	Genome-wide association identifies three new susceptibility loci for Paget's disease of bone.	Paget's disease	741 European ancestry cases, 2,699 European ancestry controls	1,474 European ancestry cases, 1,671 European ancestry controls	6p22.3	PRL	rs1341239-T	0.38	4E-6		1.2	[NR]	Illumina [2487078] (imputed)	N
755	chr6	22340390	22340391	rs724744	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of white cells	171,996 European ancestry individuals	NA	6p22.3	intergenic	rs724744-G	0.5014	3E-15		0.02758968	[0.021-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
755	chr6	22340390	22340391	rs724744	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of granulocytes	170,223 European ancestry individuals	NA	6p22.3	intergenic	rs724744-G	0.5013	1E-13		0.02610837	[0.019-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
755	chr6	22340395	22340396	rs724745	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	6p22.3		rs724745-G	0.504049	6E-22		0.021436559	[0.017-0.026] unit increase	Affymetrix [93095623] (imputed)	N
755	chr6	22340395	22340396	rs724745	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	6p22.3		rs724745-G	0.504049	9E-27		0.023812937	[0.019-0.028] unit increase	Affymetrix [93095623] (imputed)	N
755	chr6	22341468	22341469	rs1205896	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p22.3	NR	rs1205896-A	0.520511	1E-30				Affymetrix, Illumina [19905671] (imputed)	N
755	chr6	22341468	22341469	rs1205896	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	6p22.3	NR	rs1205896-A	0.503796	4E-32		0.024211	[0.02-0.028] SD unit increase	Affymetrix, Illumina [50036608] (imputed)	N
755	chr6	22341468	22341469	rs1205896	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count (basophil)	171,846 European ancestry individuals	NA	6p22.3	intergenic	rs1205896-A	0.5044	3E-20		0.03224108	[0.025-0.039] unit increase	Affymetrix [~ 2500000] (imputed)	N
755	chr6	22343591	22343592	rs113760175	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	6p22.3		rs113760175-A	NR	4E-16		0.0382	[0.029-0.047] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
755	chr6	22343591	22343592	rs113760175	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p22.3	NR	rs113760175-A	0.069209	1E-20		0.040511202	[0.032-0.049] unit increase	Affymetrix [93095623] (imputed)	N
755	chr6	22343591	22343592	rs113760175	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	6p22.3		rs113760175-A	0.069221	1E-11		0.029660337	[0.021-0.038] unit increase	Affymetrix [93095623] (imputed)	N
755	chr6	22343591	22343592	rs113760175	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	6p22.3		rs113760175-A	0.0691850000000001	2E-15		0.03468807	[0.026-0.043] unit increase	Affymetrix [93095623] (imputed)	N
755	chr6	22343591	22343592	rs113760175	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p22.3		rs113760175-A	0.069227	1E-17		0.037110243	[0.029-0.046] unit increase	Affymetrix [93095623] (imputed)	N
755	chr6	22343591	22343592	rs113760175	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	6p22.3		rs113760175-A	0.069223	2E-9		0.02636418	[0.018-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
755	chr6	22343591	22343592	rs113760175	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p22.3	NR	rs113760175-A	0.0666213	2E-27				Affymetrix, Illumina [24649327] (imputed)	N
755	chr6	22343591	22343592	rs113760175	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	6p22.3	NR	rs113760175-A	0.069024	5E-29		0.041119	[0.034-0.048] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
755	chr6	22343591	22343592	rs113760175	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p22.3	NR	rs113760175-A	0.0664713	2E-17				Affymetrix, Illumina [23114412] (imputed)	N
755	chr6	22343591	22343592	rs113760175	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	6p22.3	NR	rs113760175-A	0.068947	3E-17		0.032373	[0.025-0.04] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
755	chr6	22343591	22343592	rs113760175	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p22.3	NR	rs113760175-A	0.0665381	3E-18				Affymetrix, Illumina [23467995] (imputed)	N
755	chr6	22343591	22343592	rs113760175	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	6p22.3	NR	rs113760175-A	0.069005	7E-21		0.034983	[0.028-0.042] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
755	chr6	22343591	22343592	rs113760175	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p22.3	NR	rs113760175-A	0.066585	3E-19				Affymetrix, Illumina [23472807] (imputed)	N
755	chr6	22343591	22343592	rs113760175	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	6p22.3	NR	rs113760175-A	0.069041	7E-22		0.036226	[0.029-0.044] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
755	chr6	22343591	22343592	rs113760175	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	6p22.3		rs113760175-?	NR	4E-21				NR [~ 8900000] (imputed)	N
755	chr6	22343591	22343592	rs113760175	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	6p22.3	intergenic	rs113760175-A	0.0696	4E-12		0.04916378	[0.035-0.063] unit increase	Affymetrix [~ 2500000] (imputed)	N
755	chr6	22343591	22343592	rs113760175	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	6p22.3	intergenic	rs113760175-A	0.0696	2E-9		0.04277434	[0.029-0.057] unit increase	Affymetrix [~ 2500000] (imputed)	N
755	chr6	22359514	22359515	rs113977268	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	6p22.3		rs113977268-A	NR	5E-12		0.0284	[0.02-0.036] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
755	chr6	22359514	22359515	rs113977268	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	6p22.3	intergenic	rs113977268-A	0.0859	7E-9		0.03689133	[0.024-0.049] unit increase	Affymetrix [~ 2500000] (imputed)	N
755	chr6	22359514	22359515	rs113977268	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	6p22.3	intergenic	rs113977268-A	0.0859	2E-9		0.03861587	[0.026-0.051] unit increase	Affymetrix [~ 2500000] (imputed)	N
755	chr6	22359514	22359515	rs113977268	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	6p22.3	intergenic	rs113977268-A	0.0859	5E-9		0.03738569	[0.025-0.05] unit increase	Affymetrix [~ 2500000] (imputed)	N
755	chr6	22392259	22392260	rs2744133	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	6p22.3		rs2744133-G	NR	3E-10		0.0393	[0.027-0.051] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
755	chr6	22392259	22392260	rs2744133	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	6p22.3		rs2744133-?	NR	2E-13				NR [~ 8900000] (imputed)	N
755	chr6	22392822	22392823	rs2744132	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	6p22.3		rs2744132-?	NR	1E-8				NR [~ 8900000] (imputed)	N
756	chr6	22418440	22418441	rs2655438	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	6p22.3	RP3-404K8.2	rs2655438-C	0.295517	6E-10		0.040770862	[0.028-0.054] unit decrease	Affymetrix [7288503] (imputed)	N
756	chr6	22436290	22436291	rs7766391	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota alpha diversity (Shannon index)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	6p22.3		rs7766391-A	NR	9E-6		4.4510436	z score increase	Affymetrix, Illumina [NR] (imputed)	N
756	chr6	22457932	22457933	rs9358545	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	6p22.3		rs9358545-A	0.621626751	4E-8		0.04723599	[0.03-0.064] unit increase	Illumina [13134967] (imputed)	N
756	chr6	22465620	22465621	rs9393294	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p22.3	NR	rs9393294-C	0.857856	1E-23				Affymetrix, Illumina [17210439] (imputed)	N
756	chr6	22465620	22465621	rs9393294	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	6p22.3	NR	rs9393294-C	0.857861	5E-26		0.02907	[0.024-0.034] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
756	chr6	22465620	22465621	rs9393294	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	6p22.3	intergenic	rs9393294-T	0.1421	3E-10		0.0327078	[0.023-0.043] unit increase	Affymetrix [~ 2500000] (imputed)	N
756	chr6	22488774	22488778	rs74811610	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	6p22.3		rs74811610-C	0.142223	2E-17		0.027393231	[0.021-0.034] unit increase	Affymetrix [93095623] (imputed)	N
756	chr6	22496129	22496130	rs9393302	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p22.3	NR	rs9393302-T	0.174035	1E-15				Affymetrix, Illumina [24588908] (imputed)	N
756	chr6	22511993	22511994	rs12206494	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6p22.3	NR	rs12206494-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
756	chr6	22519387	22519387	rs770294003	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia	11,197 European ancestry low myopic cases, 21,416 European ancestry emmetropia controls	NA	6p22.3	NR	rs770294003-?	NR	5E-6		0.0935359	[0.053-0.134] unit increase	NR [13958389] (imputed)	N
757	chr6	22547154	22547155	rs77099749	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	6p22.3	NR	rs77099749-A	0.11485	3E-13		0.020935	[0.015-0.027] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
757	chr6	22569633	22569634	rs2073030	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic heart failure	14,262 European ancestry cases, 471,898 European ancestry controls, 10,540 East Asian ancestry cases, 168,186 East Asian ancestry controls	NA	6p22.3		rs2073030-T	NR	2E-8		0.0679	[0.044-0.091] unit increase	Affymetrix, Illumina [25844553] (imputed)	N
757	chr6	22570188	22570189	rs6922960	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	6p22.3	HDGFL1	rs6922960-C	0.28	6E-18		0.61	[0.47-0.75] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
757	chr6	22570244	22570245	rs6900627	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	6p22.3	HDGFL1	rs6900627-A	0.2712	4E-15		0.5857	[0.44-0.73] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
757	chr6	22591524	22591525	rs2876643	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	6p22.3	intergenic	rs2876643-A	0.3358	5E-12		0.0458	[0.033-0.059] unit increase	NR [8041861] (imputed)	N
757	chr6	22591706	22591707	rs12525417	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p22.3	RP1-309H15.2	rs12525417-T	NR	3E-9		0.0183018	[0.012-0.024] unit increase	Affymetrix [321114] (imputed)	N
757	chr6	22591706	22591707	rs12525417	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p22.3	RP1-309H15.2	rs12525417-T	NR	8E-9		0.0178625	[0.012-0.024] unit increase	Affymetrix [321169] (imputed)	N
757	chr6	22591706	22591707	rs12525417	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6p22.3	NR	rs12525417-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
757	chr6	22591706	22591707	rs12525417	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6p22.3	NR	rs12525417-?	NR	7E-11				Affymetrix [~ 8270000] (imputed)	N
757	chr6	22591706	22591707	rs12525417	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	6p22.3		rs12525417-?	NR	4E-8				NR [~ 8900000] (imputed)	N
757	chr6	22598258	22598259	rs7766436	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	20,917 European ancestry cases, 440,906 European ancestry controls, 14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	6p22.3		rs7766436-T	NR	2E-8		0.0561	[0.037-0.076] unit increase	Affymetrix, Illumina [25841367] (imputed)	N
757	chr6	22598258	22598259	rs7766436	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	6p22.3	intergenic	rs7766436-T	0.288	2E-12		0.048	[0.034-0.062] unit increase	Affymetrix [7947838] (imputed)	N
757	chr6	22599385	22599386	rs6456496	32469254	Matsunaga H	2020-05-29	Circ Genom Precis Med	Transethnic Meta-analysis of Genome-wide Association Studies Identifies Three New Loci and Characterizes Population-specific Differences for Coronary Artery Disease.	Coronary artery disease	15,302 Japanese ancestry cases, 76,014 European and East Asian ancestry cases, 36,140 Japanese ancestry controls, 264,785 European and East Asian ancestry controls	NA	6p22.3	HDGFL1, NRSN1	rs6456496-C	0.33	5E-9		1.05	[1.04-1.06]	Illumina [5167567] (imputed)	N
757	chr6	22603205	22603206	rs13211463	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p22.3	HDGFL1	rs13211463-A	0.736012	3E-9	(-10 ms)	0.03801	[0.025-0.051] unit decrease	Affymetrix [10000000] (imputed)	N
757	chr6	22603205	22603206	rs13211463	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p22.3	HDGFL1	rs13211463-A	0.736012	1E-8	(-8 ms)	0.0367627	[0.024-0.049] unit decrease	Affymetrix [10000000] (imputed)	N
757	chr6	22603205	22603206	rs13211463	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p22.3	HDGFL1	rs13211463-A	0.736012	1E-8	(-12 ms)	0.0364969	[0.024-0.049] unit decrease	Affymetrix [10000000] (imputed)	N
757	chr6	22610164	22610165	rs6908574	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	6p22.3	HDGFL1	rs6908574-C	0.34734	2E-6		1.04	[1.02-1.05]	NR [8126035] (imputed)	N
757	chr6	22612628	22612629	rs6909752	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	6p22.3	intergenic	rs6909752-A	0.3545	6E-14		0.0442	[0.033-0.056] unit increase	Affymetrix [at least 7947838] (imputed)	N
757	chr6	22612628	22612629	rs6909752	28714975	Nelson CP	2017-07-17	Nat Genet	Association analyses based on false discovery rate implicate new loci for coronary artery disease.	Coronary artery disease (myocardial infarction, percutaneous transluminal coronary angioplasty, coronary artery bypass grafting, angina or chromic ischemic heart disease)	18,467 European and unknown ancestry cases, 45,264 European and unknown ancestry controls	57,347 European and unknown ancestry cases, 219,521 European and unknown ancestry controls	6p22.3	HDGFL1	rs6909752-A	0.333	2E-9		1.051	[1.034-1.068]	Affymetrix [9149595] (imputed)	N
757	chr6	22612911	22612912	rs13200993	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	6p22.3	HDGFL1, LOC105374972	rs13200993-?	NR	3E-18		0.0453313	[0.035-0.056] unit increase	Illumina [4804024] (imputed)	N
757	chr6	22632662	22632663	rs6456499	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6p22.3	NR	rs6456499-?	NR	4E-9				Affymetrix [~ 8270000] (imputed)	N
757	chr6	22657064	22657065	rs11755054	28468790	Agopian AJ	2017-06-01	Circ Cardiovasc Genet	Genome-Wide Association Studies and Meta-Analyses for Congenital Heart Defects.	Left ventricular obstructive tract defect (inherited effect)	247 European ancestry trios, 70 non-European ancestry trios, 192 European and other ancestry trios	NA	6p22.3	intergenic	rs11755054-?	NR	3E-6		1.560273	[1.295775-1.878761]	Illumina [at least 4483243] (imputed)	N
758	chr6	22708542	22708543	rs7752577	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Melanoma	6,777 European ancestry cases, 410,350 European ancestry controls	NA	6p22.3		rs7752577-G	0.765003	1E-7		1.1198	NR	Affymetrix [7846216] (imputed)	N
758	chr6	22708542	22708543	rs7752577	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	6p22.3		rs7752577-?	NR	7E-9				NR [~ 8900000] (imputed)	N
758	chr6	22709738	22709739	rs4712709	23934736	Yu B	2013-08-11	Genet Epidemiol	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels (Pyroglutamine)	1,260 African American individuals	NA	6p22.3	LOC389370	rs4712709-C		6E-6		0.1	[0.06-0.14] unit increase	Affymetrix [~ 2500000] (imputed)	N
758	chr6	22710040	22710041	rs4712710	25742292	Aschebrook-Kilfoy B	2015-03-05	PLoS One	Genome-wide association study of parity in Bangladeshi women.	Number of children (6+ vs. 0 or 1)	1,686 Bangladeshi women	NA	6p22.3	NR	rs4712710-?		3E-6		0.08	unit increase	Illumina [1211988] (imputed)	N
758	chr6	22710499	22710500	rs16886790	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Nevus count or cutaneous melanoma	36,760 European ancestry cutaneous melanoma cases, 375,188 European ancestry controls, 12,930 European ancestry individuals, 52,847 individuals	NA	6p22.3	RP1-309H15.2	rs16886790-T	0.813443	4E-15				Affymetrix, Illumina [NR] (imputed)	N
758	chr6	22713557	22713558	rs77774351	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD40 on CD14- CD16+ monocyte	3,621 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p22.3		rs77774351-G	0.0357	2E-8		0.374	[0.24-0.5] unit increase	Illumina [18212658] (imputed)	N
758	chr6	22713951	22713952	rs7775534	25742292	Aschebrook-Kilfoy B	2015-03-05	PLoS One	Genome-wide association study of parity in Bangladeshi women.	Number of children (6+ vs. 0 or 1)	1,686 Bangladeshi women	NA	6p22.3	HDGFL1	rs7775534-?		1E-6		0.08	unit increase	Illumina [1211988] (imputed)	N
758	chr6	22719378	22719379	rs72834823	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous malignant melanoma	36,760 European ancestry cases, 375,188 European ancestry controls	NA	6p22.3	RP1-309H15.2	rs72834823-T	0.8185	1E-12		1.0972	NR	Affymetrix, Illumina [NR] (imputed)	N
758	chr6	22720080	22720081	rs62389289	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6p22.3		rs62389289-?	NR	9E-10				NR [~ 8900000] (imputed)	N
758	chr6	22729299	22729300	rs10498713	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	6p22.3	HDGFL1	rs10498713-G	0.850669	2E-9		0.0117786	[0.0079-0.0156] unit decrease	Affymetrix [12370749]	N
758	chr6	22730237	22730238	rs4267949	34737425	Mansour Aly D	2021-11-04	Nat Genet	Genome-wide association analyses highlight etiological differences underlying newly defined subtypes of diabetes.	Severe insulin-deficient type 2 diabetes	1,193 Scandinavian ancestry cases, 2,744 Scandinavian ancestry controls	NA	6p22.3	CDKAL1	rs4267949-C	0.185	3E-6		1.352	[1.19 - 1.535]	Illumina [5398302] (imputed)	N
758	chr6	22730237	22730238	rs4267949	34737425	Mansour Aly D	2021-11-04	Nat Genet	Genome-wide association analyses highlight etiological differences underlying newly defined subtypes of diabetes.	Mild obesity-related type 2 diabetes	1,374 Scandinavian ancestry cases, 2,744 Scandinavian ancestry controls	NA	6p22.3	CDKAL1	rs4267949-G	0.181479	9E-6		0.75	[0.66 - 0.852]	Illumina [5400100] (imputed)	N
758	chr6	22743402	22743403	rs10498712	19197348	Lowe JK	2009-02-06	PLoS Genet	Genome-wide association studies in an isolated founder population from the Pacific Island of Kosrae.	Quantitative traits	2,906 Kosraen individuals	NA	6p22.3	intergenic	rs10498712-G	0.25	9E-6	(HDL-C)	0.23	[NR] mg/dL increase	Affymetrix [408775]	N
758	chr6	22749327	22749328	rs78648488	29855589	Chernus J	2018-05-31	Sci Rep	GWAS reveals loci associated with velopharyngeal dysfunction.	Velopharyngeal dysfunction	54 Hispanic or Latin American and unknown ancestry cases, 922 Hispanic or Latin American and unknown ancestry controls	NA	6p22.3	NR	rs78648488-?	NR	7E-6		0.1039907	[NR] unit decrease	Illumina [at least 269494] (imputed)	N
758	chr6	22749900	22749901	rs4077636	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	6p22.3		rs4077636-?	NR	3E-20				NR [~ 8900000] (imputed)	N
758	chr6	22753046	22753047	rs7356884	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6p22.3	intergenic	rs7356884-G	0.073	8E-6	(BMI z-score change )	0.03	[NR] SD/y increase	Illumina [899892]	N
758	chr6	22801857	22801858	rs72834856	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	6p22.3	NR	rs72834856-G	NR	2E-10		0.0304	[0.021-0.04] unit decrease	Affymetrix [9000000] (imputed)	N
758	chr6	22801857	22801858	rs72834856	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	6p22.3		rs72834856-?	NR	4E-10		0.0246218	[0.017-0.032] unit decrease	NR [6912294] (imputed)	N
758	chr6	22801857	22801858	rs72834856	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	417,580 European ancestry individuals	NA	6p22.3		rs72834856-T	0.927936	5E-10		0.024	[0.016-0.032] unit decrease	NR [7250403] (imputed)	N
759	chr6	22880912	22880913	rs6928836	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	6p22.3	RP1-209A6.1	rs6928836-T	0.2091	7E-9		0.02567029	[0.017-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
759	chr6	22905036	22905037	rs1928082	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	6p22.3	RP1-209A6.1	rs1928082-A	0.665911	8E-10		0.014723184	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
759	chr6	22926036	22926037	rs73741124	31049640	Chen J	2019-05-02	Diabetologia	Genome-wide association study of type 2 diabetes in Africa.	Type 2 diabetes	2,633 African ancestry cases, 1,714 African ancestry controls	NA	6p22.3	HDGFL1, NRSN1	rs73741124-C	0.984	2E-6		2.11	[1.55-2.87]	Affymetrix, Illumina [12148595] (imputed)	N
759	chr6	22930551	22930552	rs201875709	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	6p22.3	RP1-209A6.1	rs201875709-C	0.557155	1E-9		0.013865351	[0.0094-0.0183] unit decrease	Affymetrix [93095623] (imputed)	N
760	chr6	22946572	22946573	rs9358606	35131881	Testori A	2022-02-07	Cancer Epidemiol Biomarkers Prev	Genetic analysis in African American children supports ancestry specific neuroblastoma susceptibility.	Neuroblastoma	254 African American cases, 2,990 African American controls	NA	6p22.3		rs9358606-C	NR	3E-7		0.438	unit increase	Illumina [NR] (imputed)	N
760	chr6	22957736	22957737	rs4305714	28763429	Serie DJ	2017-07-31	Pharmacogenet Genomics	Genome-wide association study of cardiotoxicity in the NCCTG N9831 (Alliance) adjuvant trastuzumab trial.	Change in LVEF in response to paclitaxel and trastuzumab in HER2+ breast cancer	800 European ancestry cases	NA	6p22.3	intergenic	rs4305714-?	NR	1E-6		1.87	[1.12-2.63] unit decrease	Affymetrix [618793]	N
760	chr6	22974225	22974226	rs9393360	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Oscillospira)	541 Japanese ancestry women	NA	6p22.3	RP1-209A6.1	rs9393360-T	0.49	6E-6		0.0257	[0.015-0.037] unit decrease	Illumina [545605]	N
760	chr6	22976016	22976017	rs9466535	35131881	Testori A	2022-02-07	Cancer Epidemiol Biomarkers Prev	Genetic analysis in African American children supports ancestry specific neuroblastoma susceptibility.	Neuroblastoma	629 African American cases, 2,990 African American controls	NA	6p22.3		rs9466535-C	NR	3E-7		0.3879	unit increase	Illumina [8524982] (imputed)	N
760	chr6	23004468	23004469	rs192686354	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Klebsiella A abundance in stool	5,959 Finnish ancestry individuals	NA	6p22.3		rs192686354-A	0.0131291	9E-9		0.221658	[0.15-0.3] unit increase	Illumina [7980478] (imputed)	N
761	chr6	23077310	23077311	rs9393366	22889924	Scharf JM	2012-08-14	Mol Psychiatry	Genome-wide association study of Tourette's syndrome.	Tourette syndrome	778 European ancestry cases, 4,414 European ancestry controls, 242 Ashkenazi Jewish cases, 354 Ashkenazi Jewish controls, 265 French Canadian founder cases, 196 French Canadian founder controls	211 Latin American cases, 285 Latin American controls	6p22.3	intergenic	rs9393366-A	0.28	8E-6		1.27	[NR]	Illumina [484295]	N
761	chr6	23193390	23193391	rs7748204	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 5 levels	252 European ancestry individuals	NA	6p22.3		rs7748204-C	NR	2E-6		0.16179	[0.097-0.227] unit increase	Illumina [NR] (imputed)	N
762	chr6	23215602	23215603	rs116727414	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p22.3	NR	rs116727414-G	0.01394	5E-9	(SULT1A1)	1.842	NR unit increase	Illumina [1671387] (imputed)	N
762	chr6	23235248	23235249	rs140619252	31993563	Ware EB	2019-11-22	Mayo Clin Proc Innov Qual Outcomes	Genome-wide Association Study of 24-Hour Urinary Excretion of Calcium, Magnesium, and Uric Acid.	Urinary volume	6,462 European ancestry individuals	NA	6p22.3	intergenic	rs140619252-T	0.13	2E-7		0.19	NR unit increase	NR [NR] (imputed)	N
762	chr6	23242825	23242826	rs13200531	29234017	Carayol J	2017-12-12	Nat Commun	Protein quantitative trait locus study in obesity during weight-loss identifies a leptin regulator.	Protein level change in low calorie diet obesity intervention	494 European ancestry individuals	NA	6p22.3	NR	rs13200531-?	NR	4E-10	(Angiotensinogen)	0.22	[0.15-0.29] unit decrease	Illumina [4020654] (imputed)	N
762	chr6	23304235	23304236	rs114655147	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (executive function) x major depressive disorder interaction (2df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	6p22.3		rs114655147-A	0.01	3E-8				NR [NR] (imputed)	N
762	chr6	23318856	23318857	rs193129245	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		6p22.3	Intergenic	rs193129245-A	0.005	1E-6	(liability model)	0.67	[0.4-0.94] unit increase	NR [19725427] (imputed)	N
763	chr6	23378950	23378951	rs1925458	31055733	Nazarian A	2019-05-05	Geroscience	Genetic heterogeneity of Alzheimer's disease in subjects with and without hypertension.	Alzheimer's disease in hypertension	1,262 European ancestry cases,  9,608 European ancestry controls	NA	6p22.3	NRSN1	rs1925458-?	0.117	1E-6		1.552795	[1.45-1.66]	NR [~ 2000000] (imputed)	N
763	chr6	23380647	23380648	rs71569678	33204752	Butler-Laporte G	2020-09-24	Open Forum Infect Dis	Genetic Determinants of Antibody-Mediated Immune Responses to Infectious Diseases Agents: A Genome-Wide and HLA Association Study.	Helicobacter pylori UREA antibody levels	2,251 White British ancestry individuals	NA	6p22.3	RP11, 439H9.1	rs71569678-A	0.94	3E-8		0.34	[0.22-0.46] unit decrease	NR [25472218] (imputed)	N
763	chr6	23437675	23437676	rs7771911	22610502	Kennedy RB	2012-05-19	Hum Genet	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IL-12p40)	Up to 512 European ancestry individuals, up to 199 African American individuals	NA	6p22.3	LOC100131805	rs7771911-A		2E-12	(EA)			Illumina [NR]	N
763	chr6	23443346	23443347	rs12110495	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	6p22.3		rs12110495-G	NR	5E-10		0.0139	[0.0096-0.0182] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
763	chr6	23446233	23446234	rs955978	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	6p22.3	NR	rs955978-C	0.431391	5E-12		0.013186	[0.0095-0.0169] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
763	chr6	23446554	23446555	rs2022330	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6p22.3		rs2022330-A	0.7169	3E-13	(conditional-joint)	0.0114	[0.0083-0.0145] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
763	chr6	23446690	23446691	rs767943	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	6p22.3		rs767943-?	NR	4E-9				NR [~ 8900000] (imputed)	N
763	chr6	23446690	23446691	rs767943	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	6p22.3	Intergenic	rs767943-A	0.2795	9E-10	(MTAG)	0.0112	[0.0077-0.0147] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
763	chr6	23446690	23446691	rs767943	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6p22.3		rs767943-A	0.269	2E-14		0.0122	[0.0091-0.0153] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
763	chr6	23446690	23446691	rs767943	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6p22.3	Intergenic	rs767943-A	0.269	2E-17	(MTAG)	0.0126	[0.0097-0.0155] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
763	chr6	23446690	23446691	rs767943	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	6p22.3	Intergenic	rs767943-A	0.264	1E-8	(MTAG)	0.0149	[0.0098-0.02] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
764	chr6	23557321	23557322	rs7755467	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 2)	3,566 European ancestry individuals	4,680 European ancestry individuals	6p22.3		rs7755467-C	0.499288358	1E-9				Illumina [7417619] (imputed)	N
764	chr6	23557321	23557322	rs7755467	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	6p22.3		rs7755467-T	0.502561	2E-10		0.014315667	[0.0099-0.0187] unit decrease	Affymetrix [93095623] (imputed)	N
764	chr6	23559113	23559114	rs2328765	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	6p22.3		rs2328765-G	0.502819	8E-11		0.014718084	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
764	chr6	23559113	23559114	rs2328765	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p22.3		rs2328765-G	0.502911	4E-12		0.01532173	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
764	chr6	23559113	23559114	rs2328765	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p22.3	NR	rs2328765-G	0.468344	2E-13				Affymetrix, Illumina [23472807] (imputed)	N
764	chr6	23559113	23559114	rs2328765	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	6p22.3	NR	rs2328765-G	0.504243	5E-16		0.015386	[0.012-0.019] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
764	chr6	23565529	23565530	rs197947	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	6p22.3		rs197947-A	NR	7E-10		0.0144	[0.0099-0.0189] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
765	chr6	23614418	23614419	rs7739290	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.3	NR	rs7739290-?	NR	3E-6		4.653	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
765	chr6	23669103	23669104	rs791980	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in dyslipidemia	295 Korean ancestry cases, 20,474 Korean ancestry controls	NA	6p22.3		rs791980-A	0.3276	7E-6		0.6461	[0.5342-0.7816]	Affymetrix [7975321] (imputed)	N
766	chr6	23743411	23743412	rs6905476	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	6p22.3	NR	rs6905476-?	NR	3E-12				Affymetrix [NR]	N
766	chr6	23767037	23767038	rs12203328	30804558	Grove J	2019-02-25	Nat Genet	Identification of common genetic risk variants for autism spectrum disorder.	Autism spectrum disorder	18,381 European ancestry cases, 27,969 European ancestry controls	2,119 European ancestry cases, 142,379 European ancestry controls	6p22.3	Intergenic	rs12203328-C	0.278	2E-6		1.069	[NR]	Illumina [9112387] (imputed)	N
766	chr6	23774486	23774487	rs6911487	35215271	Almandil NB	2022-01-27	Pharmaceuticals (Basel)	Integration of Transcriptome and Exome Genotyping Identifies Significant Variants with Autism Spectrum Disorder.	Autism spectrum disorder	70 Arab ancestry cases, 132 Arab ancestry controls	NA	6p22.3	NA	rs6911487-A	0.358	4E-6		2.965	[1.853-4.743]	Illumina [243345]	N
766	chr6	23777831	23777832	rs145570843	32747698	Matoba N	2020-08-03	Transl Psychiatry	Common genetic risk variants identified in the SPARK cohort support DDHD2 as a candidate risk gene for autism.	Autism spectrum disorder	22,916 European ancestry cases, 32,504 European ancestry controls	NA	6p22.3	NR	rs145570843-A	0.98923	4E-6		2.1276596	[1.54-2.94]	Illumina [up to 8992756] (imputed)	N
766	chr6	23786128	23786129	rs9358694	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	6p22.3	NR	rs9358694-T	0.208841	2E-8		0.0212144	[0.014-0.029] unit increase	NR [19129689] (imputed)	N
766	chr6	23818447	23818448	rs144819560	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Initial pursuit acceleration	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	6p22.3	NRSN1	rs144819560-G	0.1585	5E-8	(African)			Illumina [4404269] (imputed)	N
766	chr6	23835342	23835343	rs1925191	29855537	Hirata T	2018-05-31	Sci Rep	Japanese GWAS identifies variants for bust-size, dysmenorrhea, and menstrual fever that are eQTLs for relevant protein-coding or long non-coding RNAs.	Menstruation quality of life impact (loss of concentration)	995 Japanese ancestry female cases, 4,739 Japanese ancestry female controls	1,081 Japanese ancestry female cases, 4,533 Japanese ancestry female controls	6p22.3	NR	rs1925191-G	0.573070651	6E-6		0.1554631	[0.088-0.223] unit decrease	Affymetrix [536506]	N
766	chr6	23841131	23841132	rs9466930	23377640	GENDEP Investigators	2013-02-01	Am J Psychiatry	Common genetic variation and antidepressant efficacy in major depressive disorder: a meta-analysis of three genome-wide pharmacogenetic studies.	Major depressive disorder	Up to 2,256 European ancestry cases	NA	6p22.3	intergenic	rs9466930-C	0.215	4E-6	(remission - 12 weeks)	1.501	[1.32-1.68]	Affymetrix, Illumina [1200000] (imputed)	N
767	chr6	23856929	23856930	rs4712793	30824882	Gunjaca I	2019-03-01	J Hum Genet	Genome-wide association meta-analysis for total thyroid hormone levels in Croatian population.	Triiodothyronine levels	623 Croatian ancestry individuals	NA	6p22.3	intergenic	rs4712793-G	NR	6E-8		0.23	[0.15-0.31] nmol/L increase	NR [8753628] (imputed)	N
767	chr6	23870776	23870776	rs34739626	30804558	Grove J	2019-02-25	Nat Genet	Identification of common genetic risk variants for autism spectrum disorder.	Autism spectrum disorder	18,381 European ancestry cases, 27,969 European ancestry controls	2,119 European ancestry cases, 142,379 European ancestry controls	6p22.3	Intergenic	rs34739626-T	0.617	8E-6		1.067	[NR]	Illumina [9112387] (imputed)	N
767	chr6	23871699	23871700	rs1355459	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	6p22.3	NA	rs1355459-A	0.3157	1E-9		0.0112	[0.0077-0.0147] unit increase	NR [~ 27400000] (imputed)	N
767	chr6	23874156	23874157	rs9466957	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	6p22.3		rs9466957-T	NR	7E-10		0.0157	[0.011-0.021] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
767	chr6	23876239	23876240	rs6900723	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6p22.3	NR	rs6900723-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
767	chr6	23876239	23876240	rs6900723	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	6p22.3		rs6900723-?	NR	5E-10				NR [~ 8900000] (imputed)	N
767	chr6	23894162	23894163	rs115939727	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	6p22.3	NRSN1	rs115939727-A	0.98568	2E-46		0.0135694	[0.012-0.016] unit decrease	Affymetrix [13995440] (imputed)	N
767	chr6	23918797	23918798	rs114137292	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris heterochromicity	329 South Asian ancestry individuals		6p22.3	HERC2	rs114137292-G	0.051	4E-6		0.868	[0.51-1.23] unit decrease	Illumina [640625] (imputed)	N
767	chr6	23920049	23920050	rs72842323	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	6p22.3	NR	rs72842323-T	NR	4E-9		0.0188	[0.013-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
767	chr6	23944578	23944579	rs116563858	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	6p22.3	NR	rs116563858-C	NR	5E-12		0.0809	[0.058-0.104] unit increase	Affymetrix [9000000] (imputed)	N
767	chr6	23978085	23978086	rs111281351	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	6p22.3	NR	rs111281351-?	NR	4E-8				Illumina [7760689] (imputed)	N
768	chr6	23993622	23993623	rs497408	31311600	Namjou B	2019-07-17	BMC Med	GWAS and enrichment analyses of non-alcoholic fatty liver disease identify new trait-associated genes and pathways across eMERGE Network.	Liver fibrosis in non-alcoholic fatty liver disease	235 European ancestry individuals	NA	6p22.3	intergenic	rs497408-T	0.11039	1E-7		0.826007	[0.53-1.12] unit increase	NR [7263501] (imputed)	N
768	chr6	24006560	24006561	rs138325416	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	6p22.3	Intergenic	rs138325416-C	0.998	6E-7	(AA)	4.31	NR unit increase	Illumina [NR] (imputed)	N
768	chr6	24010192	24010193	rs80175423	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	6p22.3	NR	rs80175423-T	NR	1E-14		0.0436	[0.033-0.055] unit increase	Affymetrix [9000000] (imputed)	N
768	chr6	24013981	24013982	rs1511481	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	6p22.3	NR	rs1511481-?		5E-7	(C3)	0.1495	[NR] unit decrease	Illumina [NR]	N
768	chr6	24033564	24033565	rs190841900	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	6p22.3	NR	rs190841900-T	NR	9E-13		0.0252	[0.018-0.032] unit decrease	Affymetrix [9000000] (imputed)	N
768	chr6	24062787	24062788	rs146696563	24024966	Teumer A	2013-08-14	J Clin Periodontol	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (Mean PAL)	up to 4,032 European ancestry individuals	NA	6p22.3	NRSN1	rs146696563-T	0.99	4E-6	(Age 20-60 years)	0.2396	[0.14-0.34] unit increase	Affymetrix, Illumina [up to 17585496] (imputed)	N
768	chr6	24070357	24070358	rs34618253	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	6p22.3	NR	rs34618253-C	NR	2E-14		0.0574	[0.043-0.072] unit increase	Affymetrix [9000000] (imputed)	N
768	chr6	24078056	24078057	rs9358749	25461247	Lehmann DS	2015-02-01	Pharmacogenet Genomics	Genome-wide association study of virologic response with efavirenz-containing or abacavir-containing regimens in AIDS clinical trials group protocols.	Response to efavirenz-containing treatment in HIV 1 infection (virologic failure)	Up to 737 European ancestry individuals, Up to 545 Black individuals, Up to 314 Hispanic individuals	NA	6p22.3	NR	rs9358749-T	NR	5E-6	(phenotype 1)	3.27	[NR]	Illumina [> 8000000] (imputed)	N
768	chr6	24078056	24078057	rs9358749	25461247	Lehmann DS	2015-02-01	Pharmacogenet Genomics	Genome-wide association study of virologic response with efavirenz-containing or abacavir-containing regimens in AIDS clinical trials group protocols.	Response to abacavir-containing treatment in HIV-1 infection (virologic failure)	Up 346 European ancestry individuals, Up to 265 Black individuals, Up to 175 Hispanic individuals	NA	6p22.3	NR	rs9358749-T	NR	5E-6	(phenotype 3)	3.27	[NR]	Illumina [> 8000000] (imputed)	N
768	chr6	24080627	24080628	rs72828903	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	6p22.3	NR	rs72828903-G	NR	2E-30		0.0328	[0.027-0.038] unit increase	Affymetrix [9000000] (imputed)	N
768	chr6	24091551	24091552	rs72828912	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Squamous cell lung carcinoma	7,426 European ancestry cases, 55,627 European ancestry controls	NA	6p22.3	HDGFL1, NRSN1	rs72828912-A	0.02740709	3E-6		1.2953213	[1.162188982-1.443704376]	Illumina [10439017] (imputed)	N
768	chr6	24107092	24107093	rs6922632	21130836	Luciano M	2010-12-03	Biol Psychol	Whole genome association scan for genetic polymorphisms influencing information processing speed.	Information processing speed	Up to 4,039 European ancestry individuals	NA	6p22.3	NRSN1	rs6922632-A	0.10	4E-6	(2-choice RT)	0.19	[0.11-0.27] unit increase	Illumina [~ 610000]	N
769	chr6	24132021	24132022	rs72828936	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	6p22.3	NR	rs72828936-A	NR	7E-68		0.1141	[0.1-0.13] unit increase	Affymetrix [9000000] (imputed)	N
769	chr6	24148141	24148142	rs6925917	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	6p22.3	NR	rs6925917-A	NR	1E-41		0.0987	[0.084-0.113] unit increase	Affymetrix [9000000] (imputed)	N
769	chr6	24157704	24157705	rs34618207	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	6p22.3	NR	rs34618207-A	NR	4E-9		0.0455	[0.03-0.061] unit increase	Affymetrix [9000000] (imputed)	N
769	chr6	24163220	24163221	rs4712804	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	6p22.3		rs4712804-C	NR	5E-11		0.0113	[0.008-0.0146] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
769	chr6	24167747	24167748	rs9393533	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	6p22.3	NR	rs9393533-C	NR	1E-25		0.0352	[0.029-0.042] unit decrease	Affymetrix [9000000] (imputed)	N
769	chr6	24180689	24180690	rs62400344	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	6p22.3		rs62400344-C	NR	7E-10		0.0129	[0.0088-0.017] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
769	chr6	24181830	24181831	rs10806984	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.3	DCDC2	rs10806984-A	NR	3E-10		6.284	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
769	chr6	24210298	24210299	rs9467077	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	6p22.3	NR	rs9467077-C	NR	6E-10		0.0185	[0.013-0.024] unit increase	Affymetrix [9000000] (imputed)	N
769	chr6	24224487	24224488	rs793842	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	6p22.3	NR	rs793842-C	NR	5E-9		0.0143	[0.0096-0.019] unit decrease	Affymetrix [9000000] (imputed)	N
769	chr6	24229939	24229940	rs73726623	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	6p22.3	NR	rs73726623-C	NR	3E-22		0.0496	[0.04-0.06] unit decrease	Affymetrix [9000000] (imputed)	N
769	chr6	24234932	24234933	rs793834	21130836	Luciano M	2010-12-03	Biol Psychol	Whole genome association scan for genetic polymorphisms influencing information processing speed.	Information processing speed	Up to 4,039 European ancestry individuals	NA	6p22.3	DCDC2	rs793834-A	0.18	3E-6	(2-choice RT)	0.15	[0.09-0.21] unit increase	Illumina [~ 610000]	N
769	chr6	24241600	24241601	rs114676109	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	6p22.3	NR	rs114676109-C	NR	2E-24		0.0594	[0.048-0.071] unit increase	Affymetrix [9000000] (imputed)	N
769	chr6	24241699	24241700	rs9393539	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum alkaline phosphatase levels	105,030 Japanese ancestry individuals	NA	6p22.3	NR	rs9393539-?	NR	7E-6		0.0284	[0.016-0.041] unit decrease novel	Illumina [6108953] (imputed)	N
770	chr6	24257744	24257745	rs28993077	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	6p22.3	NR	rs28993077-T	NR	1E-15		0.031	[0.023-0.039] unit decrease	Affymetrix [9000000] (imputed)	N
770	chr6	24274451	24274452	rs12189861	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p22.3	NR	rs12189861-A	0.1053	7E-7		0.0095	[0.0058-0.0132] unit increase	NR [7666894] (imputed)	N
770	chr6	24275482	24275483	rs12205083	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Help-seeking from a GP	113,262 British ancestry cases, 219,360 British ancestry controls	NA	6p22.3	NR	rs12205083-G	0.104	6E-10		1.053	[1.04-1.07]	NR [5276842] (imputed)	N
770	chr6	24282116	24282117	rs3846828	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	6p22.3	NR	rs3846828-A	0.108143592122594	3E-8		0.008215926	[0.0053-0.0111] unit increase	NR [NR]	N
770	chr6	24303928	24303929	rs114427649	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	6p22.3	NR	rs114427649-A	NR	1E-34		0.0707	[0.059-0.082] unit decrease	Affymetrix [9000000] (imputed)	N
770	chr6	24306386	24306387	rs16889038	22837378	Wilk JB	2012-07-26	Am J Respir Crit Care Med	Genome-wide association studies identify CHRNA5/3 and HTR4 in the development of airflow obstruction.	Airflow obstruction	up to 3,368 European ancestry cases, up to 29,507 European ancestry controls	331 European ancestry cases, 2,550 European ancestry controls	6p22.3	DCDC2	rs16889038-?	0.08	8E-7	(FEV1 65%)	1.3889	[NR]	Affymetrix, Illumina [up to 2500000] (imputed)	N
770	chr6	24315441	24315442	rs72830895	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	6p22.3	NR	rs72830895-G	NR	2E-95		0.1009	[0.091-0.111] unit increase	Affymetrix [9000000] (imputed)	N
770	chr6	24318569	24318570	rs12192947	21294900	Charles BA	2011-02-04	BMC Med Genomics	A genome-wide association study of serum uric acid in African Americans.	Uric acid levels	1,017 African American individuals	NA	6p22.3	DCDC2	rs12192947-G	0.26	5E-6		0.176	[0.1-0.25] unit decrease	Affymetrix [2366856] (imputed)	N
770	chr6	24328424	24328425	rs72833015	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	6p22.3	NR	rs72833015-A	NR	3E-34		0.0609	[0.051-0.071] unit decrease	Affymetrix [9000000] (imputed)	N
770	chr6	24354044	24354045	rs3765502	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	6p22.3	DCDC2	rs3765502-T	0.7916	1E-8		0.0024	[0.0016-0.0032] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
770	chr6	24354044	24354045	rs3765502	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	165,726 East Asian ancestry individuals	NA	6p22.3	DCDC2	rs3765502-T	0.6329	2E-6		0.0034	[0.002-0.0048] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
770	chr6	24354044	24354045	rs3765502	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	6p22.3	DCDC2	rs3765502-C	0.2351	4E-8		5.49	NR z score decrease	Illumina [26237160] (imputed)	N
770	chr6	24376260	24376261	rs793696	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	6p22.3	NR	rs793696-C	NR	2E-24		0.0699	[0.057-0.083] unit decrease	Affymetrix [9000000] (imputed)	N
771	chr6	24383965	24383966	rs12204962	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	6p22.3	NR	rs12204962-C	NR	9E-11		0.0328	[0.023-0.043] unit decrease	Affymetrix [9000000] (imputed)	N
771	chr6	24392052	24392053	rs77484231	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	6p22.3	NR	rs77484231-C	NR	5E-15		0.0451	[0.034-0.056] unit increase	Affymetrix [9000000] (imputed)	N
771	chr6	24398107	24398108	rs116411696	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	6p22.3	NR	rs116411696-T	NR	1E-11		0.0649	[0.046-0.084] unit decrease	Affymetrix [9000000] (imputed)	N
771	chr6	24403454	24403455	rs11695	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	6p22.3	NR	rs11695-T	NR	6E-40		0.0447	[0.038-0.051] unit decrease	Affymetrix [9000000] (imputed)	N
771	chr6	24417619	24417620	rs2753921	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	6p22.3	NR	rs2753921-G	NR	6E-16		0.0392	[0.03-0.049] unit decrease	Affymetrix [9000000] (imputed)	N
771	chr6	24425446	24425447	rs41271779	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	6p22.3	NR	rs41271779-A	NR	4E-296		0.1204	[0.11-0.13] unit increase	Affymetrix [9000000] (imputed)	N
771	chr6	24428053	24428054	rs138612106	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum alkaline phosphatase levels	105,030 Japanese ancestry individuals	NA	6p22.3	NR	rs138612106-?	NR	1E-11		0.03258	[0.023-0.042] unit increase novel	Illumina [6108953] (imputed)	N
771	chr6	24429340	24429341	rs573778305	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Serum alkaline phosphatase levels	437,896 European ancestry individuals	NA	6p22.3		rs573778305-?	NR	6E-800		0.864179	[0.83-0.89] unit decrease	NR [9800000] (imputed)	N
771	chr6	24429340	24429341	rs573778305	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Serum alkaline phosphatase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	6p22.3	GPLD1	rs573778305-?		2E-107		0.87	[0.79-0.95] unit decrease	Illumina [31500000] (imputed)	N
771	chr6	24429340	24429341	rs573778305	31666285	Olafsson S	2019-10-30	Cancer Epidemiol Biomarkers Prev	Common and rare sequence variants influencing tumor biomarkers in blood.	Serum alkaline phosphatase levels	162,774 Icelandic ancestry individuals	NA	6p22.3	GPLD1	rs573778305-C	0.008	2E-111		0.53	[0.58-0.48] unit decrease	Illumina [NR] (imputed)	N
771	chr6	24436001	24436002	rs9467148	31666285	Olafsson S	2019-10-30	Cancer Epidemiol Biomarkers Prev	Common and rare sequence variants influencing tumor biomarkers in blood.	Serum alkaline phosphatase levels	162,774 Icelandic ancestry individuals	NA	6p22.3	GPLD1	rs9467148-A	0.27	2E-29		0.05	[0.04-0.06] unit increase	Illumina [NR] (imputed)	N
771	chr6	24436909	24436910	rs143314495	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Serum alkaline phosphatase levels	437,896 European ancestry individuals	NA	6p22.3		rs143314495-?	NR	2E-148		0.630051	[0.58-0.68] unit decrease	NR [9800000] (imputed)	N
771	chr6	24436909	24436910	rs143314495	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	6p22.3	NR	rs143314495-G	NR	5E-87		0.6167	[0.56-0.68] unit decrease	Affymetrix [9000000] (imputed)	N
771	chr6	24441745	24441746	rs9467160	18940312	Yuan X	2008-10-10	Am J Hum Genet	Population-based genome-wide association studies reveal six loci influencing plasma levels of liver enzymes.	Liver enzyme levels	7,751 European ancestry individuals	1,005 European ancestry individuals, 3,669 Asian Indian ancestry individuals	6p22.3	GPLD1	rs9467160-A	0.24	1E-11	(ALP)	0.03	[0.024-0.044] U/L increase	Affymetrix, Illumina [up to 496032]	N
771	chr6	24448140	24448141	rs757934059	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Serum alkaline phosphatase levels	437,896 European ancestry individuals	NA	6p22.3		rs757934059-?	NR	3E-116		0.880309	[0.8-0.96] unit decrease	NR [9800000] (imputed)	N
771	chr6	24450107	24450108	rs149093201	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Serum alkaline phosphatase levels	437,896 European ancestry individuals	NA	6p22.3		rs149093201-?	NR	4E-83		0.69616	[0.62-0.78] unit decrease	NR [9800000] (imputed)	N
771	chr6	24450107	24450108	rs149093201	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	6p22.3	NR	rs149093201-A	NR	5E-53		0.7144	[0.62-0.81] unit decrease	Affymetrix [9000000] (imputed)	N
771	chr6	24453237	24453238	rs6918194	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	6p22.3		rs6918194-?	NR	4E-10				NR [~ 8900000] (imputed)	N
771	chr6	24454362	24454363	rs61748578	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	6p22.3	NR	rs61748578-A	NR	2E-48		0.1414	[0.12-0.16] unit decrease	Affymetrix [9000000] (imputed)	N
771	chr6	24456906	24456907	rs116287860	31666285	Olafsson S	2019-10-30	Cancer Epidemiol Biomarkers Prev	Common and rare sequence variants influencing tumor biomarkers in blood.	Serum alkaline phosphatase levels	162,774 Icelandic ancestry individuals	NA	6p22.3	GPLD1	rs116287860-C	0.085	1E-13		0.06	[0.04-0.08] unit increase	Illumina [NR] (imputed)	N
771	chr6	24460507	24460508	rs140895057	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	6p22.3	NR	rs140895057-A	NR	5E-15		0.807	[0.6-1.01] unit increase	Affymetrix [9000000] (imputed)	N
771	chr6	24462881	24462882	rs114734335	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	6p22.3	NR	rs114734335-A	NR	5E-49		0.1472	[0.13-0.17] unit decrease	Affymetrix [9000000] (imputed)	N
771	chr6	24463019	24463020	rs17300770	31666285	Olafsson S	2019-10-30	Cancer Epidemiol Biomarkers Prev	Common and rare sequence variants influencing tumor biomarkers in blood.	Serum alkaline phosphatase levels	162,774 Icelandic ancestry individuals	NA	6p22.3	GPLD1	rs17300770-C	0.116	3E-43		0.09	[0.10-0.08] unit decrease	Illumina [NR] (imputed)	N
771	chr6	24463019	24463020	rs17300770	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum alkaline phosphatase levels	105,030 Japanese ancestry individuals	NA	6p22.3	GPLD1	rs17300770-?	NR	6E-84		0.1791	[0.16-0.2] unit decrease novel	Illumina [6108953] (imputed)	N
771	chr6	24464428	24464429	rs78420872	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	118,886 East Asian ancestry individuals	NA	6p22.3		rs78420872-A	0.063611	4E-97		0.165793	[0.15-0.18] unit decrease	Illumina [13474352] (imputed)	N
771	chr6	24466971	24466972	rs759598032	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Serum alkaline phosphatase levels	437,896 European ancestry individuals	NA	6p22.3		rs759598032-?	NR	8E-10		0.750894	[0.5-1] unit decrease	NR [9800000] (imputed)	N
771	chr6	24467136	24467137	rs371635995	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Serum alkaline phosphatase levels	437,896 European ancestry individuals	NA	6p22.3		rs371635995-?	NR	3E-15		0.694444	[0.51-0.88] unit decrease	NR [9800000] (imputed)	N
771	chr6	24469911	24469912	rs28709106	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	6p22.3		rs28709106-T	NR	4E-502		0.1118	[0.11-0.12] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
771	chr6	24469995	24469996	rs192684352	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p22.3	NR	rs192684352-C	0.01045	2E-9	(SRSF3)	0.04169	NR unit increase	Illumina [1671387] (imputed)	N
771	chr6	24469995	24469996	rs192684352	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p22.3	NR	rs192684352-C	0.01045	2E-8	(SNRPD3)	0.05314	NR unit increase	Illumina [1671387] (imputed)	N
771	chr6	24469995	24469996	rs192684352	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p22.3	NR	rs192684352-C	0.01045	2E-8	(RAB7A)	0.06271	NR unit increase	Illumina [1671387] (imputed)	N
771	chr6	24469995	24469996	rs192684352	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p22.3	NR	rs192684352-C	0.01045	2E-11	(VIM)	1.816	NR unit increase	Illumina [1671387] (imputed)	N
771	chr6	24472813	24472814	rs62400471	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Serum alkaline phosphatase levels	437,896 European ancestry individuals	NA	6p22.3		rs62400471-?	NR	2E-20		0.700576	[0.54-0.86] unit decrease	NR [9800000] (imputed)	N
771	chr6	24472813	24472814	rs62400471	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	6p22.3	NR	rs62400471-A	NR	1E-19		0.7343	[0.58-0.89] unit decrease	Affymetrix [9000000] (imputed)	N
771	chr6	24473860	24473861	rs146221974	31666285	Olafsson S	2019-10-30	Cancer Epidemiol Biomarkers Prev	Common and rare sequence variants influencing tumor biomarkers in blood.	Serum alkaline phosphatase levels	162,774 Icelandic ancestry individuals	NA	6p22.3	GPLD1	rs146221974-A	0.001	9E-17		0.51	[0.63-0.39] unit decrease	Illumina [NR] (imputed)	N
771	chr6	24474190	24474191	rs183821586	31666285	Olafsson S	2019-10-30	Cancer Epidemiol Biomarkers Prev	Common and rare sequence variants influencing tumor biomarkers in blood.	Serum alkaline phosphatase levels	162,774 Icelandic ancestry individuals	NA	6p22.3	GPLD1	rs183821586-G	0.001	4E-11		0.42	[0.54-0.30] unit decrease	Illumina [NR] (imputed)	N
771	chr6	24475781	24475782	rs9467191	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum alkaline phosphatase levels	105,030 Japanese ancestry individuals	NA	6p22.3	NR	rs9467191-?	NR	2E-19		0.09588	[0.075-0.117] unit increase novel	Illumina [6108953] (imputed)	N
771	chr6	24476430	24476431	rs61754637	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Serum alkaline phosphatase levels	437,896 European ancestry individuals	NA	6p22.3		rs61754637-?	NR	4E-98		0.361066	[0.33-0.4] unit decrease	NR [9800000] (imputed)	N
771	chr6	24476430	24476431	rs61754637	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	6p22.3	NR	rs61754637-C	NR	4E-54		0.3481	[0.3-0.39] unit decrease	Affymetrix [9000000] (imputed)	N
771	chr6	24476436	24476437	rs61754636	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Serum alkaline phosphatase levels	437,896 European ancestry individuals	NA	6p22.3		rs61754636-?	NR	3E-101		0.335312	[0.3-0.37] unit decrease	NR [9800000] (imputed)	N
771	chr6	24476436	24476437	rs61754636	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	6p22.3	NR	rs61754636-T	NR	9E-52		0.3087	[0.27-0.35] unit decrease	Affymetrix [9000000] (imputed)	N
771	chr6	24476437	24476438	rs139690401	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Serum alkaline phosphatase levels	437,896 European ancestry individuals	NA	6p22.3		rs139690401-?	NR	5E-14		0.759775	[0.54-0.98] unit decrease	NR [9800000] (imputed)	N
771	chr6	24480294	24480295	rs6911965	20139978	Kamatani Y	2010-02-07	Nat Genet	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Hematological and biochemical traits	Up to 14,402 Japanese individuals	NA	6p22.3	GPLD1	rs6911965-C	0.66	2E-11	(ALP)	0.235	[0.17-0.3] unit decrease	Illumina [561583]	N
771	chr6	24481298	24481299	rs2760139	31272903	Sunadome H	2019-07-01	Allergol Int	Correlation between eosinophil count, its genetic background and body mass index: The Nagahama Study.	Eosinophil counts	4,650 East Asian ancestry individuals	NA	6p22.3	NR	rs2760139-A	0.29	3E-7		0.1162	NR unit increase	Illumina [103680] (imputed)	N
771	chr6	24484956	24484957	rs7765515	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	6p22.3	NR	rs7765515-A	NR	3E-276		0.1258	[0.12-0.13] unit decrease	Affymetrix [9000000] (imputed)	N
771	chr6	24485180	24485181	rs7765441	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	6p22.3	GPLD1	rs7765441-A	0.89	2E-248		33.7	z-score increase	Affymetrix [4311822] (imputed)	N
771	chr6	24487168	24487169	rs114754605	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	6p22.3	NR	rs114754605-C	NR	2E-12		0.1097	[0.079-0.14] unit increase	Affymetrix [9000000] (imputed)	N
771	chr6	24489690	24489691	rs2235501	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	6p22.3	NR	rs2235501-C	NR	3E-50		0.077	[0.067-0.087] unit decrease	Affymetrix [9000000] (imputed)	N
771	chr6	24489959	24489960	rs189263035	31675503	Gurdasani D	2019-10-01	Cell	Uganda Genome Resource Enables Insights into Population History and Genomic Discovery in Africa.	Serum alkaline phosphatase levels	14,126 African ancestry individuals	NA	6p22.3		rs189263035-G	0.924	7E-20		0.318426	unit increase	Affymetrix, Illumina [at least 24423923] (imputed)	N
771	chr6	24491474	24491475	rs1883415	22001757	Chambers JC	2011-10-16	Nat Genet	Genome-wide association study identifies loci influencing concentrations of liver enzymes in plasma.	Liver enzyme levels (alkaline phosphatase)	Up to 52,350 European ancestry individuals, up to 8,739 Indian Asian ancestry individuals	NA	6p22.3	ALDH5A1, GPLD1	rs1883415-C	0.33	6E-26		3.1	[2.50-3.70] % increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
772	chr6	24513197	24513198	rs150674717	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum alkaline phosphatase levels	105,030 Japanese ancestry individuals	NA	6p22.3	NR	rs150674717-?	NR	3E-54		0.3084	[0.27-0.35] unit decrease novel	Illumina [6108953] (imputed)	N
772	chr6	24517704	24517705	rs17374923	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	6p22.3	NR	rs17374923-C	NR	6E-10		0.043	[0.029-0.057] unit decrease	Affymetrix [9000000] (imputed)	N
772	chr6	24523755	24523756	rs116417499	30801121	O'Donnell S	2019-02-25	Inflamm Bowel Dis	The Unsolved Link of Genetic Markers and Crohn's Disease Progression: A North American Cohort Experience.	Crohn's disease (time to first abdominal surgery)	1,360 European ancestry individuals	NA	6p22.3	NR	rs116417499-A	0.0154867	4E-7				Illumina [5378266] (imputed)	N
772	chr6	24529989	24529990	rs185994611	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Strep throat	52,487 European ancestry cases, 22,017 European ancestry controls	NA	6p22.3	NR	rs185994611-?	NR	8E-6		0.0621	[0.035-0.089] unit increase	Illumina [at least 560000] (imputed)	N
772	chr6	24537640	24537641	rs4646851	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Coronary artery disease in diabetes	361 Korean ancestry cases, 4,951 Korean ancestry controls	NA	6p22.3		rs4646851-A	0.01117	5E-6		2.978	[1.861-4.765]	Affymetrix [7975321] (imputed)	N
772	chr6	24538626	24538627	rs35999285	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	6p22.3	NR	rs35999285-C	NR	2E-9		0.0281	[0.019-0.037] unit increase	Affymetrix [9000000] (imputed)	N
772	chr6	24544966	24544967	rs16889440	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	6p22.3	NR	rs16889440-T	NR	3E-12		0.0246	[0.018-0.031] unit decrease	Affymetrix [9000000] (imputed)	N
772	chr6	24544966	24544967	rs16889440	20923822	Niu N	2010-10-05	Genome Res	Radiation pharmacogenomics: a genome-wide association approach to identify radiation response biomarkers using human lymphoblastoid cell lines.	Radiation response	93 African American human lymphoblastoid cell lines, 89 European ancestry human lymphoblastoid cell lines, 95 Han Chinese ancestry human lymphoblastoid cell lines	NA	6p22.3	KIAA0319	rs16889440-?	0.18	2E-6				Affymetrix, Illumina [1348798]	N
772	chr6	24547026	24547027	rs811100	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	6p22.3	NR	rs811100-G	NR	3E-59		0.1044	[0.092-0.117] unit increase	Affymetrix [9000000] (imputed)	N
772	chr6	24547026	24547027	rs811100	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal cancer	978 Austrian ancestry colorectal cancer cases, 636 Austrian ancestry advanced colorectal adenoma cases, 4,294 European ancestry controls	NA	6p22.3	Intergenic	rs811100-?		9E-6		1.553	[NR]	Affymetrix [492217] (imputed)	N
772	chr6	24548560	24548561	rs2760181	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals, at least 88,461 European ancestry individuals	NA	6p22.3	KIAA0319	rs2760181-T	0.0282	3E-7	(Japanese)	0.0612	[0.038-0.085] unit decrease	Illumina [1986983] (imputed)	N
772	chr6	24549314	24549315	rs12197384	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum alkaline phosphatase levels	105,030 Japanese ancestry individuals	NA	6p22.3	NR	rs12197384-?	NR	2E-8	(conditional on round 6)	0.042498447	[0.028-0.057] unit decrease novel	Illumina [6108953] (imputed)	N
772	chr6	24564128	24564129	rs807545	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	6p22.3	NR	rs807545-A	NR	3E-36		0.0527	[0.044-0.061] unit increase	Affymetrix [9000000] (imputed)	N
772	chr6	24567781	24567782	rs113503241	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-to-hip ratio adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,049 whole genome sequenced individuals, 29,518 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,001 Mylopotamos (founder/genetic isolate) individuals, 867 Pomak (founder/genetic isolate) individuals	206,045 European ancestry individuals	6p22.3	KIAA0319	rs113503241-A	0.9953	9E-6		0.6026	[0.34-0.87] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
772	chr6	24579821	24579822	rs2760156	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	6p22.3	NR	rs2760156-A	NR	1E-42		0.0954	[0.082-0.109] unit increase	Affymetrix [9000000] (imputed)	N
772	chr6	24580767	24580768	rs115901482	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	6p22.3	NR	rs115901482-A	NR	3E-29		0.0788	[0.065-0.093] unit increase	Affymetrix [9000000] (imputed)	N
772	chr6	24584180	24584181	rs6902039	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	6p22.3	NR	rs6902039-C	NR	4E-25		0.0256	[0.021-0.03] unit decrease	Affymetrix [9000000] (imputed)	N
772	chr6	24585062	24585063	rs115065904	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	6p22.3	NR	rs115065904-G	NR	3E-9		0.1163	[0.078-0.155] unit decrease	Affymetrix [9000000] (imputed)	N
772	chr6	24597480	24597481	rs73727344	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	6p22.3	NR	rs73727344-G	NR	2E-17		0.0524	[0.04-0.065] unit decrease	Affymetrix [9000000] (imputed)	N
772	chr6	24605023	24605024	rs17307478	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	6p22.3	NR	rs17307478-C	NR	4E-11		0.0252	[0.018-0.033] unit increase	Affymetrix [9000000] (imputed)	N
772	chr6	24605568	24605569	rs4712831	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	6p22.3	NR	rs4712831-T	NR	2E-10		0.0189	[0.013-0.025] unit increase	Affymetrix [9000000] (imputed)	N
773	chr6	24648405	24648406	rs1555089	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6p22.3		rs1555089-?	NR	4E-9				NR [~ 8900000] (imputed)	N
773	chr6	24651319	24651320	rs3181245	26621817	Cheng TH	2015-12-01	Sci Rep	Meta-analysis of genome-wide association studies identifies common susceptibility polymorphisms for colorectal and endometrial cancer near SH2B3 and TSHZ1.	Colorectal or endometrial cancer	5,725 European ancestry colorectal carcinoma cases, 2,212 European ancestry endometrial carcinoma cases, 13,396 European ancestry controls	NA	6p22.3	TDP2	rs3181245-C	0.514	2E-7	(same direction)	1.12	[1.07-1.16]	Illumina [up to 6000000] (imputed)	N
773	chr6	24654442	24654443	rs3181238	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum alkaline phosphatase levels	105,030 Japanese ancestry individuals	NA	6p22.3	NR	rs3181238-?	NR	1E-13		0.03243	[0.024-0.041] unit increase novel	Illumina [6108953] (imputed)	N
773	chr6	24658947	24658948	rs61757564	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	6p22.3	NR	rs61757564-C	NR	5E-24		0.1841	[0.15-0.22] unit decrease	Affymetrix [9000000] (imputed)	N
773	chr6	24697423	24697424	rs6904345	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	6p22.3	NR	rs6904345-T	0.634032	2E-8		0.0165472	[0.011-0.022] unit increase	Affymetrix [16580851] (imputed)	N
773	chr6	24704567	24704568	rs115202710	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (90 or 130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	6p22.3	ACOT13	rs115202710-?	NR	7E-6		0.184	[0.066-0.302] unit decrease	Illumina [at least 13000000] (imputed)	N
773	chr6	24721786	24721787	rs9379687	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	6p22.3	NR	rs9379687-A	NR	8E-13		0.0313	[0.023-0.04] unit decrease	Affymetrix [9000000] (imputed)	N
773	chr6	24738386	24738387	rs113731670	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	6p22.3	NR	rs113731670-C	NR	2E-6		1.1627907	[NR]	Illumina [7158791] (imputed)	N
773	chr6	24740788	24740789	rs35276016	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Stroke	40,585 European ancestry cases, 406,111 European ancestry controls	NA	6p22.3	C6orf62	rs35276016-T	0.08	1E-7		1.1	[1.06-1.14]	NR [~ 8000000] (imputed)	N
773	chr6	24746738	24746739	rs12190789	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	6p22.3	NR	rs12190789-T	NR	4E-30		0.0376	[0.031-0.044] unit increase	Affymetrix [9000000] (imputed)	N
773	chr6	24749103	24749104	rs12203240	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6p22.3	NR	rs12203240-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
773	chr6	24749103	24749104	rs12203240	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	6p22.3		rs12203240-?	NR	3E-9				NR [~ 8900000] (imputed)	N
773	chr6	24749412	24749413	rs17419851	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	6p22.3	NR	rs17419851-T	NR	6E-42		0.049	[0.042-0.056] unit decrease	Affymetrix [9000000] (imputed)	N
773	chr6	24749412	24749413	rs17419851	21507922	Ramsuran V	2011-05-01	Clin Infect Dis	Duffy-null-associated low neutrophil counts influence HIV-1 susceptibility in high-risk South African black women.	Neutrophil count	115 African ancestry HIV-negative individuals	NA	6p22.3	AL133264.1, RP3-369A17.4	rs17419851-?	NR	9E-6				Illumina [874956]	N
774	chr6	24774577	24774578	rs9379688	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p22.3	NR	rs9379688-?	NR	8E-6		0.262	[0.15-0.37] unit increase	Illumina [at least 560000] (imputed)	N
774	chr6	24789870	24789871	rs72837788	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	6p22.3		rs72837788-?	NR	1E-14				NR [~ 8900000] (imputed)	N
774	chr6	24789870	24789871	rs72837788	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	6p22.3		rs72837788-?	NR	3E-25				NR [~ 8900000] (imputed)	N
774	chr6	24803079	24803080	rs13209580	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	6p22.3		rs13209580-T	0.0261	5E-6		1.696		NR [11110260] (imputed)	N
774	chr6	24803079	24803080	rs13209580	30942860	Shin J	2019-04-03	J Clin Endocrinol Metab	Novel genetic locus of visceral fat and systemic inflammation.	Visceral fat	1589 French-Canadian ancestry individuals	NA	6p22.3	Intergenic	rs13209580-C	NR	2E-6	(adjusted for total body fat)	0.129	[0.075-0.183] unit increase	Illumina [8511049] (imputed)	N
774	chr6	24803316	24803317	rs4078356	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	6p22.3		rs4078356-C	0.0264	2E-6		1.727		NR [11110260] (imputed)	N
774	chr6	24806047	24806048	rs3730	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	6p22.3		rs3730-T	0.46	8E-23				Affymetrix [10369434] (imputed)	N
774	chr6	24806337	24806338	rs9393586	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p22.3		rs9393586-T	0.46	8E-14				Affymetrix [10369434] (imputed)	N
774	chr6	24818364	24818365	rs6922558	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	6p22.3	FAM65B	rs6922558-C	0.564109	2E-10		0.01421341	[0.0098-0.0186] unit increase	Affymetrix [93095623] (imputed)	N
774	chr6	24820051	24820052	rs6911302	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	6p22.3	FAM65B	rs6911302-C	0.55136	2E-31		0.025968729	[0.022-0.03] unit increase	Affymetrix [93095623] (imputed)	N
774	chr6	24820051	24820052	rs6911302	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	6p22.3	FAM65B	rs6911302-C	0.551361	2E-46		0.03182006	[0.027-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
774	chr6	24820051	24820052	rs6911302	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p22.3	FAM65B	rs6911302-C	0.551362	1E-32		0.026323013	[0.022-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
774	chr6	24820051	24820052	rs6911302	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	6p22.3	FAM65B	rs6911302-C	0.5516	2E-16		0.02954939	[0.022-0.037] unit increase	Affymetrix [~ 2500000] (imputed)	N
774	chr6	24820051	24820052	rs6911302	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	6p22.3	FAM65B	rs6911302-C	0.5516	6E-23		0.03548046	[0.028-0.043] unit decrease	Affymetrix [~ 2500000] (imputed)	N
774	chr6	24820051	24820052	rs6911302	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	6p22.3	FAM65B	rs6911302-C	0.5516	2E-18		0.0318939	[0.025-0.039] unit decrease	Affymetrix [~ 2500000] (imputed)	N
774	chr6	24821830	24821831	rs115989377	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	6p22.3	NR	rs115989377-A	NR	3E-10		0.0489	[0.034-0.064] unit increase	Affymetrix [9000000] (imputed)	N
774	chr6	24823989	24823990	rs9366584	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	6p22.3		rs9366584-T	0.458	5E-18				Affymetrix [10369434] (imputed)	N
774	chr6	24846262	24846263	rs4583980	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	6p22.3	NR	rs4583980-C	NR	9E-11		0.0226	[0.016-0.029] unit increase	Affymetrix [9000000] (imputed)	N
774	chr6	24863074	24863075	rs4256430	22554406	Kang SJ	2012-05-03	Genes Brain Behav	Family-based genome-wide association study of frontal ? oscillations identifies potassium channel gene KCNJ6.	Electroencephalographic traits in alcoholism	1,560 European ancestry individuals from 117 families	NA	6p22.3	FAM65B	rs4256430-A	0.465	8E-6		0.099	[NR] unit decrease	Illumina [634583]	N
774	chr6	24866494	24866495	rs12194442	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	6p22.3	NR	rs12194442-G	NR	2E-47		0.0637	[0.055-0.072] unit increase	Affymetrix [9000000] (imputed)	N
774	chr6	24866494	24866495	rs12194442	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	6p22.3	NR	rs12194442-G	NR	6E-12		0.031	[0.022-0.04] unit decrease	Affymetrix [9000000] (imputed)	N
774	chr6	24901860	24901861	rs79014439	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	6p22.3	intergenic	rs79014439-G	0.001	1E-6		34.08	[3.52-329.69]	Illumina [1556551]	N
775	chr6	24905814	24905815	rs76520616	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	6p22.3	NR	rs76520616-C	NR	2E-12		0.0482	[0.035-0.062] unit increase	Affymetrix [9000000] (imputed)	N
775	chr6	24905814	24905815	rs76520616	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	6p22.3	NR	rs76520616-C	NR	6E-39		0.089	[0.076-0.102] unit increase	Affymetrix [9000000] (imputed)	N
775	chr6	24913125	24913126	rs2817731	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	6p22.3	NR	rs2817731-C	NR	3E-15		0.0196	[0.015-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
775	chr6	24932255	24932256	rs1410684	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	6p22.3	RIPOR2	rs1410684-T	0.627936	3E-59		0.00391777	[0.0034-0.0044] unit increase	Affymetrix [13995440] (imputed)	N
775	chr6	24950546	24950547	rs34705571	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	6p22.3	NR	rs34705571-G	NR	2E-21		0.0295	[0.023-0.036] unit decrease	Affymetrix [9000000] (imputed)	N
775	chr6	24962254	24962255	rs76793066	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	6p22.3	MTCO2P33	rs76793066-T	0.9803	8E-6		0.1463	[0.082-0.21] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
775	chr6	24967239	24967240	rs10946737	27671213	Petros Z	2016-09-26	BMC Genomics	Genome-wide association and replication study of anti-tuberculosis drugs-induced liver toxicity.	Liver injury in anti-tuberculosis drug treatment	48 Ethiopian cases with liver injury, 354 Ethiopian cases without liver injury	27 Ethiopian cases with liver injury, 217 Ethiopian cases without liver injury	6p22.3	FAM65B	rs10946737-A	NR	4E-6		3.4	[2.2-5.3]	Illumina [660206]	N
775	chr6	24967548	24967549	rs127489	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6p22.3	GMNN	rs127489-?	NR	4E-6	(TAG 52:1)	0.1778395	[0.1-0.25] unit increase	Affymetrix [at least 2500000] (imputed)	N
775	chr6	24967548	24967549	rs127489	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6p22.3	GMNN	rs127489-?	NR	1E-6	(PC 36:4)	0.18396118	[0.11-0.26] unit increase	Affymetrix [at least 2500000] (imputed)	N
775	chr6	24978510	24978511	rs12193223	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	6p22.3		rs12193223-C	0.938	1E-62		0.37	[-0.42--0.33] % decrease	Affymetrix [NR] (imputed)	N
775	chr6	24978510	24978511	rs12193223	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	6p22.3	FAM65B	rs12193223-C	0.9449	6E-9		0.0201	[0.013-0.027] unit increase	Affymetrix, Illumina [33811881] (imputed)	N
775	chr6	24978510	24978511	rs12193223	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	6p22.3	NR	rs12193223-G	NR	2E-26		0.0534	[0.044-0.063] unit increase	Affymetrix [9000000] (imputed)	N
775	chr6	24978510	24978511	rs12193223	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	6p22.3	NR	rs12193223-G	NR	2E-19		0.0463	[0.036-0.056] unit decrease	Affymetrix [9000000] (imputed)	N
775	chr6	24981222	24981223	rs9467373	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	6p22.3	NR	rs9467373-C	0.4355	3E-9				NR [9056863] (imputed)	N
775	chr6	24981222	24981223	rs9467373	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p22.3	FAM65B	rs9467373-T	0.574587	9E-10	(-20 ms)	0.0352347	[0.024-0.046] unit increase	Affymetrix [10000000] (imputed)	N
775	chr6	24981222	24981223	rs9467373	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p22.3	FAM65B	rs9467373-T	0.574587	5E-12	(-22 ms)	0.0378044	[0.027-0.049] unit increase	Affymetrix [10000000] (imputed)	N
775	chr6	24981222	24981223	rs9467373	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p22.3	FAM65B	rs9467373-T	0.574587	2E-8	(-18 ms)	0.0308272	[0.02-0.042] unit increase	Affymetrix [10000000] (imputed)	N
775	chr6	24981222	24981223	rs9467373	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p22.3	FAM65B	rs9467373-T	0.574587	1E-9	(-26 ms)	0.0341587	[0.023-0.045] unit increase	Affymetrix [10000000] (imputed)	N
775	chr6	24981222	24981223	rs9467373	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p22.3	FAM65B	rs9467373-T	0.574587	1E-11	(-24 ms)	0.0375591	[0.026-0.049] unit increase	Affymetrix [10000000] (imputed)	N
775	chr6	24990084	24990085	rs12205717	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Thalamus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	6p22.3	NR	rs12205717-?		2E-6				Illumina [4322238] (imputed)	N
775	chr6	24992361	24992362	rs186361153	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	6p22.3	FAM65B	rs186361153-G	1.0	9E-7	(AA)	0.489	unit increase	Illumina [NR] (imputed)	N
776	chr6	25042111	25042112	rs148823241	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	6p22.3	FAM65B	rs148823241-G	0.013742	1E-9		0.05822533	[0.039-0.077] unit increase	Affymetrix [93095623] (imputed)	N
776	chr6	25046542	25046543	rs34388462	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p22.3		rs34388462-T	0.76	1E-9				Affymetrix [10369434] (imputed)	N
776	chr6	25068846	25068847	rs116693613	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Cerebrospinal fluid p-tau levels in normal cognition	305 European ancestry cognitively normal individuals	NA	6p22.3	ASS1P1, CMAHP, NUP50P2	rs116693613-A	0.04	7E-8		1.42	[0.91-1.93] unit increase	Illumina [8252679] (imputed)	N
776	chr6	25120786	25120787	rs302972	26718567	Williams SR	2015-12-30	Neurology	Shared genetic susceptibility of vascular-related biomarkers with ischemic and recurrent stroke.	Creatinine levels in ischemic stroke	1,725 European ancestry cases, 258 African ancestry cases, 117 cases	NA	6p22.3	NR	rs302972-?	NR	3E-6				Illumina [7500450] (imputed)	N
776	chr6	25148559	25148560	rs79738691	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.3	CMAHP	rs79738691-A	NR	5E-8		5.463	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
777	chr6	25170667	25170668	rs73388146	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	65,967 individuals	NA	6p22.3	NR	rs73388146-?		1E-8				NR [8377093]	N
777	chr6	25170667	25170668	rs73388146	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	6p22.3	NR	rs73388146-G	NR	7E-9		1.1494253	[NR]	Illumina [7158791] (imputed)	N
777	chr6	25174069	25174070	rs1986731	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	6p22.3	NR	rs1986731-C	NR	2E-9		0.0207	[0.014-0.028] unit increase	Affymetrix [9000000] (imputed)	N
777	chr6	25177507	25177508	rs6942227	29121268	Amare AT	2017-11-09	JAMA Psychiatry	Association of Polygenic Score for Schizophrenia and HLA Antigen and Inflammation Genes With Response to Lithium in Bipolar Affective Disorder: A Genome-Wide Association Study.	Bipolar disorder lithium response (categorical) or schizophrenia	704 European and East Asian ancestry lithium responder bipolar disorder cases, 1,662 European and East Asian ancestry lithium non-responder bipolar disorder controls, 36,989 schizophrenia cases, controls (see Ripke 2014 PMID:25056061).	NA	6p22.3	CMAHP	rs6942227-A		3E-8				NR [NR] (imputed)	N
777	chr6	25198662	25198663	rs9393623	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	6p22.3		rs9393623-?	NR	3E-31				NR [~ 8900000] (imputed)	N
777	chr6	25199852	25199853	rs77482156	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	6p22.3	NR	rs77482156-T	0.0308151	9E-9		0.104388416	[0.069-0.14] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
777	chr6	25199852	25199853	rs77482156	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.3	ENSG00000264238	rs77482156-T	NR	2E-10		6.362	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
777	chr6	25224924	25224925	rs9467442	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	6p22.2	NR	rs9467442-G	NR	4E-9		0.0194	[0.013-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
777	chr6	25236644	25236645	rs77951490	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	6p22.2	LOC101928663	rs77951490-A	0.0526	3E-12		0.0603	[0.043-0.077] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
777	chr6	25244075	25244076	rs72828723	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	6p22.2	NR	rs72828723-T	NR	3E-9		0.025	[0.017-0.033] unit increase	Affymetrix [9000000] (imputed)	N
777	chr6	25244075	25244076	rs72828723	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	6p22.2	NR	rs72828723-T	NR	2E-10		0.0268	[0.019-0.035] unit decrease	Affymetrix [9000000] (imputed)	N
777	chr6	25244075	25244076	rs72828723	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	6p22.2	NR	rs72828723-T	NR	2E-28		0.0474	[0.039-0.056] unit decrease	Affymetrix [9000000] (imputed)	N
777	chr6	25244075	25244076	rs72828723	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	6p22.2	NR	rs72828723-T	NR	2E-9		0.0253	[0.017-0.034] unit decrease	Affymetrix [9000000] (imputed)	N
777	chr6	25260917	25260918	rs79249301	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Schizophrenia (MTAG)	940,613 European ancestry individuals	NA			rs79249301-?	NR	3E-12				NR [2625067]	N
777	chr6	25262856	25262857	rs72828724	27846281	Galesloot TE	2016-11-15	PLoS One	Meta-GWAS and Meta-Analysis of Exome Array Studies Do Not Reveal Genetic Determinants of Serum Hepcidin.	Hepcidin/ferritin ratio	1495 European ancestry individuals without iron deficiency or clinical inflammation, 324 European ancestry individuals, 1206 Val Borbera (founder/genetic isolated) individuals without iron deficiency or clinical inflammation, 274 Val Borbera (founder/genetic isolated) individuals, 2,695 European ancestry individuals without iron deficiency or clinical inflammation, 207 individuals	NA	6p22.2	RP3-522P13.3	rs72828724-A	0.0858	3E-6		0.1692	[0.098-0.241] unit decrease	Illumina [up to 38043574] (imputed)	N
777	chr6	25263218	25263219	rs60005721	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	6p22.2	RPL21P68	rs60005721-A	NR	8E-9	(EA)	1.116	[1.08-1.15]	Illumina [6627481] (imputed)	N
777	chr6	25274165	25274166	rs723048	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	6p22.2		rs723048-?	NR	7E-15				NR [~ 8900000] (imputed)	N
777	chr6	25276265	25276266	rs2744267	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	6p22.2	RP3-522P13.2, LRRC16A	rs2744267-G	0.728931	3E-31		0.03019892	[0.025-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
777	chr6	25283176	25283177	rs144350646	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Angina pectoris	30,025 European ancestry cases, 440,906 European ancestry controls, 14,007 East Asian ancestry cases, 145,158 East Asian ancestry controls	NA	6p22.2		rs144350646-G	NR	4E-8		0.1579	[0.1-0.21] unit decrease	Affymetrix, Illumina [25842036] (imputed)	N
777	chr6	25283176	25283177	rs144350646	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Angina pectoris	14,007 East Asian ancestry cases, 145,158 East Asian ancestry controls	NA	6p22.2		rs144350646-G	0.059401088	3E-8		0.15986435	[0.1-0.22] unit decrease	Illumina [13426705] (imputed)	N
777	chr6	25296605	25296606	rs2744294	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	6p22.2	LRRC16A	rs2744294-A	0.649019	2E-33		0.029392974	[0.025-0.034] unit increase	Affymetrix [93095623] (imputed)	N
778	chr6	25297120	25297121	rs183360145	28334935	Raffield LM	2017-05-15	Hum Mol Genet	Genome-wide association study of iron traits and relation to diabetes in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL): potential genomic intersection of iron and glucose regulation?	Iron status biomarkers (total iron binding capacity)	12,586 Hispanic/Latino individuals	NA	6p22.2	LRRC16A	rs183360145-T	NR	3E-8		0.595	[0.38-0.81] unit increase	Illumina [27700000] (imputed)	N
778	chr6	25332129	25332130	rs12192665	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	6p22.2	NR	rs12192665-T	NR	4E-26		0.0346	[0.028-0.041] unit decrease	Affymetrix [9000000] (imputed)	N
778	chr6	25333664	25333665	rs71555190	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p22.2		rs71555190-G	0.844943	3E-8		0.0308822	[0.02-0.042] unit increase	NR [11722792] (imputed)	N
778	chr6	25334240	25334241	rs12196438	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	6p22.2		rs12196438-C	0.831016	2E-8		0.0289023	[0.019-0.039] unit increase	NR [11722792] (imputed)	N
778	chr6	25338529	25338530	rs2690083	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	6p22.2	NR	rs2690083-T	0.345385070845726	2E-10		0.00753962	[0.0052-0.0099] unit decrease	NR [NR]	N
778	chr6	25338529	25338530	rs2690083	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	6p22.2	NR	rs2690083-T	0.345385070845726	2E-10		0.009813438	[0.0068-0.0128] unit decrease	NR [NR]	N
778	chr6	25338529	25338530	rs2690083	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	6p22.2	NR	rs2690083-T	0.345385070845726	4E-10		0.008017852	[0.0055-0.0105] unit decrease	NR [NR]	N
778	chr6	25338529	25338530	rs2690083	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	6p22.2	NR	rs2690083-T	0.345385070845726	2E-10		0.0062754243	[0.0043-0.0082] unit decrease	NR [NR]	N
778	chr6	25341404	25341405	rs2744228	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	6p22.2	NR	rs2744228-G	0.383691899593417	2E-10		0.0060263267	[0.0042-0.0079] unit decrease	NR [NR]	N
778	chr6	25341806	25341807	rs2690090	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p22.2	NR	rs2690090-T	0.139	6E-6	(IFNAR2_of_monocytes)			Illumina [5084123] (imputed)	N
778	chr6	25351477	25351477	rs139915396	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	6p22.2	LRRC16A	rs139915396-I	0.1	4E-8		0.69	[0.44-0.94] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
778	chr6	25351477	25351477	rs139915396	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	6p22.2	LRRC16A	rs139915396-I	0.0926	1E-7		0.7071	[0.44-0.97] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
778	chr6	25365887	25365888	rs116418977	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	6p22.2	LRRC16A	rs116418977-T	NR	1E-8		0.033716097	[0.022-0.045] unit increase	Affymetrix [NR]	N
778	chr6	25368193	25368194	rs77925174	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p22.2	NR	rs77925174-T	0.108168	4E-356				Affymetrix, Illumina [20825802] (imputed)	N
778	chr6	25371368	25371369	rs62392365	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.2	NR	rs62392365-?	NR	2E-7		5.16	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
778	chr6	25371368	25371369	rs62392365	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	6p22.2	LRRC16A	rs62392365-A	NR	6E-9		0.035368994	[0.023-0.047] unit decrease	Affymetrix [NR]	N
778	chr6	25371368	25371369	rs62392365	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	6p22.2	NR	rs62392365-A	NR	4E-15		1.22	[NR]	Illumina [7158791] (imputed)	N
778	chr6	25374045	25374046	rs111722075	28334935	Raffield LM	2017-05-15	Hum Mol Genet	Genome-wide association study of iron traits and relation to diabetes in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL): potential genomic intersection of iron and glucose regulation?	Iron status biomarkers (transferrin saturation)	12,589 Hispanic/Latino individuals	NA	6p22.2	LRRC16A	rs111722075-C	NR	2E-12		0.159	[0.11-0.2] unit decrease	Illumina [27700000] (imputed)	N
778	chr6	25374045	25374046	rs111722075	28334935	Raffield LM	2017-05-15	Hum Mol Genet	Genome-wide association study of iron traits and relation to diabetes in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL): potential genomic intersection of iron and glucose regulation?	Iron status biomarkers (iron levels)	12,580 Hispanic/Latino individuals	NA	6p22.2	LRRC16A	rs111722075-C	NR	1E-8		0.21	[0.14-0.28] unit decrease	Illumina [27700000] (imputed)	N
778	chr6	25384230	25384231	rs114622824	27846281	Galesloot TE	2016-11-15	PLoS One	Meta-GWAS and Meta-Analysis of Exome Array Studies Do Not Reveal Genetic Determinants of Serum Hepcidin.	Hepcidin/ferritin ratio	1495 European ancestry individuals without iron deficiency or clinical inflammation, 324 European ancestry individuals, 1206 Val Borbera (founder/genetic isolated) individuals without iron deficiency or clinical inflammation, 274 Val Borbera (founder/genetic isolated) individuals, 2,695 European ancestry individuals without iron deficiency or clinical inflammation, 207 individuals	NA	6p22.2	LRRC16A	rs114622824-C	0.9061	9E-8	(Subset)	0.19	[0.12-0.26] unit increase	Illumina [up to 38043574] (imputed)	N
778	chr6	25384360	25384361	rs215011	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	67,764 individuals	NA	6p22.2	NR	rs215011-?		3E-12				NR [8377093]	N
778	chr6	25384360	25384361	rs215011	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Bipolar disorder (MTAG)	65,682 individuals	NA	6p22.2	NR	rs215011-?		5E-9				NR [520857]	N
778	chr6	25411021	25411022	rs79774308	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p22.2	NR	rs79774308-A	0.96	6E-10		1.452	[1.33-1.57]	Illumina [11270530] (imputed)	N
778	chr6	25411413	25411414	rs9379762	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	6p22.2	NR	rs9379762-A	NR	1E-9		0.0156	[0.011-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
778	chr6	25414022	25414023	rs9379764	27846281	Galesloot TE	2016-11-15	PLoS One	Meta-GWAS and Meta-Analysis of Exome Array Studies Do Not Reveal Genetic Determinants of Serum Hepcidin.	Hepcidin/ferritin ratio	1495 European ancestry individuals without iron deficiency or clinical inflammation, 324 European ancestry individuals, 1206 Val Borbera (founder/genetic isolated) individuals without iron deficiency or clinical inflammation, 274 Val Borbera (founder/genetic isolated) individuals, 2,695 European ancestry individuals without iron deficiency or clinical inflammation, 207 individuals	NA	6p22.2	LRRC16A	rs9379764-T	0.7561	6E-9		0.1401	[0.093-0.187] unit increase	Illumina [up to 38043574] (imputed)	N
778	chr6	25417422	25417423	rs4712936	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	6p22.2	NR	rs4712936-T	0.921787824176753	8E-9		0.009879967	[0.0065-0.0132] unit increase	NR [NR]	N
778	chr6	25419093	25419094	rs7752195	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Pork consumption	335,576 European ancestry individuals	NA	6p22.2	LRRC16A, SCGN, SLC17A4, SLC17A1	rs7752195-?	NR	2E-10		0.00804284	[-0.00041-0.0165] unit increase	Affymetrix [25921788] (imputed)	N
778	chr6	25419093	25419094	rs7752195	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Oily fish consumption	335,576 European ancestry individuals	NA	6p22.2	LRRC16A, SCGN, SLC17A4, SLC17A1	rs7752195-?	NR	2E-10		0.0273156	[0.019-0.036] unit decrease	Affymetrix [25921788] (imputed)	N
778	chr6	25419093	25419094	rs7752195	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p22.2	HFE, HIST1H1A, HIST1H1C, HIST1H1D, HIST1H1E, HIST1H1T, HIST1H2AA, HIST1H2AB, HIST1H2AC, HIST1H2AD, HIST1H2AE, HIST1H2APS1, HIST1H2BA, HIST1H2BB, HIST1H2BC, HIST1H2BD, HIST1H2BE, HIST1H2BF, HIST1H2BG, HIST1H2BH, HIST1H2BI, HIST1H3A, HIST1H3B, HIST1H3C, HIST1H3D, HIST1H3E, HIST1H3F, HIST1H3G, HIST1H4A, HIST1H4B, HIST1H4C, HIST1H4D, HIST1H4E, HIST1H4F, HIST1H4G, HIST1H4H, LRRC16A, SCGN, SLC17A1, SLC17A2, SLC17A3, SLC17A4, TRIM38	rs7752195-?		4E-14		1.1627907	[1.12-1.22]	Affymetrix, Illumina [NR]	N
778	chr6	25420343	25420344	rs913455	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	6p22.2	NR	rs913455-G	NR	2E-35		0.0525	[0.044-0.061] unit decrease	Affymetrix [9000000] (imputed)	N
778	chr6	25420343	25420344	rs913455	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	6p22.2	NR	rs913455-G	NR	8E-11		0.0275	[0.019-0.036] unit increase	Affymetrix [9000000] (imputed)	N
778	chr6	25420343	25420344	rs913455	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	6p22.2	NR	rs913455-G	NR	6E-14		0.0317	[0.023-0.04] unit decrease	Affymetrix [9000000] (imputed)	N
778	chr6	25420343	25420344	rs913455	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	6p22.2	NR	rs913455-G	NR	2E-11		0.0286	[0.02-0.037] unit increase	Affymetrix [9000000] (imputed)	N
778	chr6	25420343	25420344	rs913455	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	6p22.2	NR	rs913455-G	NR	1E-12		0.0308	[0.022-0.039] unit decrease	Affymetrix [9000000] (imputed)	N
778	chr6	25420343	25420344	rs913455	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	6p22.2	NR	rs913455-G	NR	5E-11		0.0279	[0.02-0.036] unit increase	Affymetrix [9000000] (imputed)	N
778	chr6	25420343	25420344	rs913455	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p22.2	LRRC16A	rs913455-C		5E-39		0.053	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
778	chr6	25420343	25420344	rs913455	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fish- and plant-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	6p22.2	LRRC16A, SCGN, SLC17A4, SLC17A1, SLC17A3, SLC17A2, TRIM38, HIST1H1A, HIST1H3A, HIST1H4A, HIST1H4B, HIST1H3B, HIST1H2AB, HIST1H2BB, HIST1H3C, HIST1H1C, HFE, HIST1H4C, HIST1H1T, HIST1H2BC, HIST1H2AC, HIST1H2BD, HIST1H2BE, HIST1H4D, HIST1H3D, HIST1H2AD, HIST1H2BF, HIST1H4E, HIST1H3G, HIST1H2BI, BTN3A2, BTN2A2, BTN3A1, BTN3A3, BTN2A1, BTN1A1, HMGN4, ABT1, ZNF322, HIST1H2BJ, HIST1H2AG, HIST1H2BK, HIST1H4I, HIST1H2AH, PRSS16, POM121L2, ZNF391, ZNF184, HIST1H2BL, HIST1H2AI, HIST1H3H, HIST1H2AJ, HIST1H2BM, HIST1H4J, HIST1H4K, HIST1H2AK, HIST1H2BN, HIST1H2AL, HIST1H1B, HIST1H3I, HIST1H4L, HIST1H3J, HIST1H2AM, HIST1H2BO, OR2B2, OR2B6, ZNF165, ZSCAN16, ZKSCAN8, ZSCAN9, ZKSCAN4, NKAPL, PGBD1, ZSCAN31, ZKSCAN3, ZSCAN12, ZSCAN23, GPX6, SCAND3, TRIM27, C6orf100, ZNF311, OR2W1, OR2B3, OR2J1, OR2J3, OR2J2, OR14J1, OR5V1, OR12D3, OR12D2, OR11A1, OR10C1, OR2H1, MAS1L, UBD, GABBR1, OR2H2	rs913455-?	NR	4E-10		0.0267718	[0.018-0.035] unit decrease	Affymetrix [25921788] (imputed)	N
778	chr6	25421746	25421747	rs9467508	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p22.2		rs9467508-A	0.267	2E-8				Affymetrix [10369434] (imputed)	N
778	chr6	25425525	25425526	rs7774567	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	6p22.2	LRRC16A	rs7774567-?	NR	1E-15		0.03166287	[0.024-0.039] unit increase	NR [7306098]	N
779	chr6	25430148	25430149	rs2328887	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.2	LRRC16A	rs2328887-T	NR	2E-9		0.0311468	[0.021-0.041] unit decrease	Affymetrix [323858] (imputed)	N
779	chr6	25430148	25430149	rs2328887	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.2	LRRC16A	rs2328887-T	NR	1E-9		0.0315236	[0.021-0.042] unit decrease	Affymetrix [127266] (imputed)	N
779	chr6	25430148	25430149	rs2328887	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6p22.2		rs2328887-?	NR	2E-11				NR [~ 8900000] (imputed)	N
779	chr6	25443267	25443268	rs141869141	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p22.2	NR	rs141869141-T	0.01045	2E-8	(ATP5F1D)	0.04452	NR unit increase	Illumina [1671387] (imputed)	N
779	chr6	25444613	25444614	rs6918354	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	65,967 individuals	NA	6p22.2	NR	rs6918354-?		2E-9				NR [8377093]	N
779	chr6	25444613	25444614	rs6918354	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	6p22.2	LRRC16A	rs6918354-T	NR	4E-10	(EA)	1.081	[1.06-1.11]	Illumina [6627481] (imputed)	N
779	chr6	25450025	25450026	rs9295661	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	6p22.2	NR	rs9295661-A	0.921644018656524	3E-9		0.012665557	[0.0085-0.0169] unit increase	NR [NR]	N
779	chr6	25450025	25450026	rs9295661	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	6p22.2	NR	rs9295661-A	0.921644018656524	2E-9		0.01651509	[0.011-0.022] unit increase	NR [NR]	N
779	chr6	25450025	25450026	rs9295661	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	6p22.2	NR	rs9295661-A	0.921644018656524	1E-8		0.013536143	[0.0089-0.0182] unit increase	NR [NR]	N
779	chr6	25450025	25450026	rs9295661	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	6p22.2	NR	rs9295661-A	0.921644018656524	2E-9		0.01059946	[0.0072-0.014] unit increase	NR [NR]	N
779	chr6	25452782	25452783	rs116272812	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	6p22.2		rs116272812-?	NR	4E-169				NR [~ 8900000] (imputed)	N
779	chr6	25452782	25452783	rs116272812	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	6p22.2		rs116272812-?	NR	1E-300				NR [~ 8900000] (imputed)	N
779	chr6	25453056	25453057	rs74662487	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Liver iron content	32,858 European ancestry individuals	NA	6p22.2	CARMIL1	rs74662487-?	NR	8E-75	(conditional)	0.215	NR mg/g increase	Affymetrix [9390170] (imputed)	N
779	chr6	25456955	25456956	rs9467520	30942860	Shin J	2019-04-03	J Clin Endocrinol Metab	Novel genetic locus of visceral fat and systemic inflammation.	Visceral fat	1589 French-Canadian ancestry individuals	NA	6p22.2	LRRC16A	rs9467520-G	NR	5E-6	(adjusted for subcutaneous fat)	0.073	[0.042-0.104] unit increase	Illumina [8511049] (imputed)	N
779	chr6	25459545	25459546	rs78876292	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-4 levels	8,124 Finnish ancestry individuals	NA	6p22.2	NR	rs78876292-C		9E-6		0.2881	[0.16-0.42] SD units increase	NR [10700000] (imputed)	N
779	chr6	25464198	25464199	rs301399	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.2	LRRC16A	rs301399-T	NR	4E-8		0.0189162	[0.012-0.026] unit decrease	Affymetrix [127266] (imputed)	N
779	chr6	25469270	25469271	rs149124714	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Disorders of iron metabolism (PheCode 275.1)	643 European ancestry cases, 455,705 European ancestry controls	NA	6p22.2		rs149124714-A	0.003525	9E-20		5.52	[4.33-6.71] unit increase	NR [11842647] (imputed)	N
779	chr6	25469330	25469331	rs16890640	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in overweight individuals	up to 10,058 European ancestry male individuals, up to 7,189 European ancestry female individuals	NA	6p22.2	LRRC16	rs16890640-T	0.79	8E-6	(women)	0.092	[0.051-0.133] kg/m2 increase	Affymetrix, Illumina [at least 188473] (imputed)	N
779	chr6	25480327	25480328	rs34991172	32109421	Li C	2020-02-20	Am J Hum Genet	Genome-Wide Association Analysis in Humans Links Nucleotide Metabolism to Leukocyte Telomere Length.	Leukocyte telomere length	78,592 European ancestry individuals	NA	6p22.2	CARMIL1	rs34991172-G	0.07	6E-9		0.061	[0.039-0.083] unit decrease	Affymetrix, Illumina, Perlegen [up to 30071938] (imputed)	N
779	chr6	25480327	25480328	rs34991172	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.2	NR	rs34991172-?	NR	2E-7		5.191	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
779	chr6	25486013	25486014	rs13217797	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	6p22.2	NR	rs13217797-T	NR	6E-6		1.06	[NR]	Illumina [7158791] (imputed)	N
779	chr6	25486625	25486626	rs301395	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p22.2	LRRC16A	rs301395-C	0.359855	5E-8	(-32 ms)	0.031421	[0.02-0.043] unit decrease	Affymetrix [10000000] (imputed)	N
779	chr6	25486625	25486626	rs301395	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p22.2	LRRC16A	rs301395-C	0.359855	5E-8	(-26 ms)	0.0302023	[0.019-0.042] unit decrease	Affymetrix [10000000] (imputed)	N
779	chr6	25486625	25486626	rs301395	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p22.2	LRRC16A	rs301395-C	0.359855	3E-8	(-34 ms)	0.0319144	[0.021-0.043] unit decrease	Affymetrix [10000000] (imputed)	N
779	chr6	25486625	25486626	rs301395	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p22.2	LRRC16A	rs301395-C	0.359855	2E-8	(-28 ms)	0.0313913	[0.02-0.043] unit decrease	Affymetrix [10000000] (imputed)	N
779	chr6	25486625	25486626	rs301395	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p22.2	LRRC16A	rs301395-C	0.359855	1E-8	(-30 ms)	0.0320184	[0.021-0.043] unit decrease	Affymetrix [10000000] (imputed)	N
779	chr6	25486799	25486800	rs9295663	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	6p22.2		rs9295663-?	NR	5E-8				Affymetrix [NR] (imputed)	N
779	chr6	25488582	25488583	rs2274089	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	6p22.2		rs2274089-T	0.0949	6E-13		0.1970365	[0.14-0.25] mmHg increase	Affymetrix, Illumina [242866] (imputed)	N
779	chr6	25488582	25488583	rs2274089	19084217	Benyamin B	2008-12-17	Am J Hum Genet	Variants in TF and HFE explain approximately 40% of genetic variation in serum-transferrin levels.	Iron status biomarkers	459 European ancestry twin pairs	NA	6p22.2	LRRC16A	rs2274089-?	NR	5E-6	(serum iron)			Illumina [315887]	N
779	chr6	25488582	25488583	rs2274089	19084217	Benyamin B	2008-12-17	Am J Hum Genet	Variants in TF and HFE explain approximately 40% of genetic variation in serum-transferrin levels.	Iron status biomarkers	459 European ancestry twin pairs	NA	6p22.2	LRRC16	rs2274089-?	NR	8E-7	(transferrin saturation)			Illumina [315887]	N
779	chr6	25488582	25488583	rs2274089	19084217	Benyamin B	2008-12-17	Am J Hum Genet	Variants in TF and HFE explain approximately 40% of genetic variation in serum-transferrin levels.	Iron status biomarkers	459 European ancestry twin pairs	NA	6p22.2	LRRC16	rs2274089-?	NR	3E-7	(serum transferrin)			Illumina [315887]	N
779	chr6	25494336	25494340	rs202056061	28334935	Raffield LM	2017-05-15	Hum Mol Genet	Genome-wide association study of iron traits and relation to diabetes in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL): potential genomic intersection of iron and glucose regulation?	Iron status biomarkers (transferrin saturation)	12,589 Hispanic/Latino individuals	NA	6p22.2	LRRC16A	rs202056061-AAGTT	NR	4E-10		0.199	[0.14-0.26] unit decrease	Illumina [27700000] (imputed)	N
779	chr6	25494336	25494340	rs202056061	28334935	Raffield LM	2017-05-15	Hum Mol Genet	Genome-wide association study of iron traits and relation to diabetes in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL): potential genomic intersection of iron and glucose regulation?	Iron status biomarkers (iron levels)	12,580 Hispanic/Latino individuals	NA	6p22.2	LRRC16A	rs202056061-AAGTT	NR	1E-8		0.293	[0.19-0.39] unit decrease	Illumina [27700000] (imputed)	N
779	chr6	25495217	25495218	rs447724	30942860	Shin J	2019-04-03	J Clin Endocrinol Metab	Novel genetic locus of visceral fat and systemic inflammation.	Visceral fat	1589 French-Canadian ancestry individuals	NA	6p22.2	LRRC16A	rs447724-C	NR	5E-6	(adjusted for total body fat)	0.0915	[0.052-0.131] unit decrease	Illumina [8511049] (imputed)	N
779	chr6	25497895	25497896	rs115103442	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		CARMIL1	rs115103442-?	NR	1E-11	(male)	3.10673	[NR] unit decrease	Affymetrix [NR] (imputed)	N
779	chr6	25504561	25504562	rs407934	33106546	Johnson TA	2020-10-26	J Hum Genet	Association of an IGHV3-66 gene variant with Kawasaki disease.	Kawasaki disease	1,276 East Asian ancestry cases, 5,086 East Asian ancestry controls	2,152 East Asian ancestry cases, 2,751 East Asian ancestry controls	6p22.2	CARMIL1	rs407934-T	NR	2E-7		0.81	[0.75-0.88]	Affymetrix, Illumina [6265045] (imputed)	N
779	chr6	25505616	25505617	rs6924266	29109912	Rawofi L	2017-11-02	PeerJ	Genome-wide association study of pigmentary traits (skin and iris color) in individuals of East Asian ancestry.	Iris color (L* coordinate)	377 East Asian ancestry individuals	NA	6p22.2	LRRC16A	rs6924266-T	0.232895	4E-6		0.407769	[0.24-0.58] unit decrease	Illumina [at least 520076] (imputed)	N
779	chr6	25510648	25510649	rs9461183	33832965	Sandoval-Plata G	2021-04-08	Ann Rheum Dis	Variants in urate transporters, ADH1B, GCKR and MEPE genes associate with transition from asymptomatic hyperuricaemia to gout: results of the first gout versus asymptomatic hyperuricaemia GWAS in Caucasians using data from the UK Biobank.	Gout	7,049 European ancestry cases, 64,424 European ancestry controls	NA	6p22.2	CARMIL1	rs9461183-G	0.42	3E-8		1.12	[1.07-1.16]	Affymetrix [710030]	N
779	chr6	25514178	25514179	rs35789010	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	6p22.2	NR	rs35789010-A	0.05	2E-8		1.19	[1.13-1.25]	Illumina [8468885] (imputed)	N
779	chr6	25514178	25514179	rs35789010	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	6p22.2	NR	rs35789010-G	0.0497018	5E-11		0.09514581	[0.067-0.123] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
779	chr6	25514178	25514179	rs35789010	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in diabetes	70,762 European ancestry individuals, 20,967 African American individuals	NA	6p22.2	LRRC16A	rs35789010-A	0.061	4E-8		1.019	[0.65-1.38] unit decrease	Affymetrix [NR] (imputed)	N
779	chr6	25514178	25514179	rs35789010	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	6p22.2	LRRC16A	rs35789010-A	NR	5E-9		0.032510735	[0.022-0.043] unit increase	Affymetrix [NR]	N
779	chr6	25514178	25514179	rs35789010	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls	NA	6p22.2	LRRC16A	rs35789010-?	NR	5E-19		1.46	[1.35-1.59]	Illumina [at least 5000000] (imputed)	N
779	chr6	25514178	25514179	rs35789010	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Squamous cell lung carcinoma	7,426 European ancestry cases, 55,627 European ancestry controls	NA	6p22.2	LRRC16A	rs35789010-A	0.057734438	8E-8		1.235953	[1.144046309-1.335242974]	Illumina [10439017] (imputed)	N
779	chr6	25514178	25514179	rs35789010	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in ever smokers	23,223 European ancestry cases,  16,964 European ancestry controls	NA	6p22.2	LRRC16A	rs35789010-A	0.058475139	2E-6		1.1598864	[1.090567196-1.233611681]	Illumina [10439017] (imputed)	N
779	chr6	25514178	25514179	rs35789010	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	6p22.2	LRRC16A	rs35789010-A	0.05845569	3E-7		1.1343168	[1.081107002-1.190145595]	Illumina [10439017] (imputed)	N
779	chr6	25514807	25514808	rs301385	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Forns index in high alcohol intake	33,437 British ancestry individuals	NA	6p22.2		rs301385-?	0.4163	2E-8		0.002701	unit decrease	NR [6200000] (imputed)	N
779	chr6	25521920	25521921	rs34164888	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	6p22.2	LRRC16A	rs34164888-A	0.22879	6E-22		0.029858017	[0.024-0.036] unit increase	Affymetrix [93095623] (imputed)	N
779	chr6	25521920	25521921	rs34164888	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	6p22.2	LRRC16A	rs34164888-A	0.228797	2E-22		0.030323178	[0.024-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
779	chr6	25521920	25521921	rs34164888	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	6p22.2	LRRC16A	rs34164888-A	0.2285	7E-42		0.05842709	[0.05-0.067] unit decrease	Affymetrix [~ 2500000] (imputed)	N
779	chr6	25522712	25522713	rs212939	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Pursuit maintenance gain	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	6p22.2	LRRC16A	rs212939-C	0.1074	1E-6	(African)			Illumina [4404269] (imputed)	N
779	chr6	25526318	25526319	rs149359690	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Liver iron content	32,858 European ancestry individuals	NA	6p22.2	SCGN	rs149359690-?	NR	1E-173	(conditional)	0.364	NR mg/g increase	Affymetrix [9390170] (imputed)	N
779	chr6	25526318	25526319	rs149359690	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	6p22.2		rs149359690-C	0.9	4E-325		0.69	[-0.72--0.65] % decrease	Affymetrix [NR] (imputed)	N
779	chr6	25527962	25527963	rs214053	34553764	Little A	2021-09-06	Hum Mol Genet	Whole genome sequence analysis of platelet traits in the NHLBI trans-omics for precision medicine initiative.	Platelet count	14,392 African American individuals, 13,985 Hispanic or Latin American individuals, 32,129 European ancestry individuals, 681 East Asian ancestry individuals, 13 individuals	10,664 individuals, 10,694 African American individuals, 7,287 Hispanic or Latin American individuals, 7,857 African ancestry individuals	6p22.2		rs214053-C	0.43165	2E-10		2.4131806	[1.67-3.15] unit decrease	NR [NR]	N
779	chr6	25527962	25527963	rs214053	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p22.2		rs214053-T	0.557	1E-54				Affymetrix [10369434] (imputed)	N
779	chr6	25527962	25527963	rs214053	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	6p22.2	LRRC16A	rs214053-C	0.4411	7E-35		0.04454812	[0.037-0.052] unit increase	Affymetrix [~ 2500000] (imputed)	N
779	chr6	25527962	25527963	rs214053	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	6p22.2	LRRC16A	rs214053-C	0.4414	4E-39		0.04794275	[0.041-0.055] unit decrease	Affymetrix [~ 2500000] (imputed)	N
779	chr6	25528549	25528550	rs6913974	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	6p22.2	LRRC16A	rs6913974-A	0.4413	8E-45		0.05111697	[0.044-0.058] unit increase	Affymetrix [~ 2500000] (imputed)	N
779	chr6	25530083	25530084	rs214056	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p22.2	NR	rs214056-C	0.44809	6E-129				Affymetrix, Illumina [24588908] (imputed)	N
779	chr6	25531367	25531368	rs214058	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	6p22.2	LRRC16A	rs214058-A	0.424991	3E-57		0.03639145	[0.032-0.041] unit increase	Affymetrix [93095623] (imputed)	N
779	chr6	25533533	25533534	rs12526480	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	6p22.2	LRRC16A	rs12526480-G	0.3382	7E-19		0.03416289	[0.027-0.042] unit decrease	Affymetrix [~ 2500000] (imputed)	N
779	chr6	25533533	25533534	rs12526480	22423221	Qayyum R	2012-03-08	PLoS Genet	A meta-analysis and genome-wide association study of platelet count and mean platelet volume in african americans.	Platelet count	16,388 African American individuals	NA	6p22.2	LRRC16A	rs12526480-T	0.305	9E-9		4.39	[2.9-5.88] 10^9 L decrease	Affymetrix, Illumina [~ 2200000] (imputed)	N
779	chr6	25535635	25535636	rs212930	35023831	Chong M	2022-01-13	Elife	GWAS and ExWAS of blood Mitochondrial DNA copy number identifies 71 loci and highlights a potential causal role in dementia.	Mitochondrial DNA copy number	395,718 British, Irish, Other White, South Asian, African ancestry individuals	NA	6p22.2	NR	rs212930-G	0.861621	3E-9		0.0149	[0.01-0.0198] unit increase	Affymetrix [23037915] (imputed)	N
779	chr6	25536590	25536591	rs77244967	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	6p22.2		rs77244967-A	0.8696	3E-8		0.0327827	[0.021-0.044] unit increase	NR [11722792] (imputed)	N
779	chr6	25536590	25536591	rs77244967	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	6p22.2		rs77244967-A	0.8696	1E-8		0.0330898	[0.022-0.045] unit increase	NR [11722792] (imputed)	N
779	chr6	25537193	25537194	rs214060	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Platelet count	16,201 African American or Afro-Caribbean individuals	NA	6p22.2		rs214060-T	0.5626	4E-7		0.0569	[0.035-0.079] unit increase	Affymetrix, Illumina [NR] (imputed)	N
779	chr6	25543638	25543639	rs969297	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p22.2		rs969297-G	0.228	7E-37				Affymetrix [10369434] (imputed)	N
779	chr6	25548287	25548288	rs441460	22139419	Gieger C	2011-11-30	Nature	New gene functions in megakaryopoiesis and platelet formation.	Platelet count	38,891 European ancestry individuals, 1,661 Val Borbera (founder/genetic isolate) individuals, 521 Carlantino (founder/genetic isolate) individuals, 1,198 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,213 South Tyrolean (founder/genetic isolate) individuals, 890 Sorbian (founder/genetic isolate) individuals, 4,292 Sardinian (founder/genetic isolate) individuals	Up to 16,949 European ancestry individuals, 854 Cliento (founder/genetic isolate) individuals, 1,035 Talana (founder/genetic isolate) individuals	6p22.2	LRRC16	rs441460-G	NR	9E-18		3.08	[2.38-3.78] 10^9/l increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
779	chr6	25549049	25549050	rs454095	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	6p22.2	LRRC16A	rs454095-C	0.445311	1E-54		0.04122233	[0.036-0.046] unit increase	Affymetrix [93095623] (imputed)	N
780	chr6	25559897	25559898	rs214054	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	6p22.2	LRRC16A	rs214054-G	0.443928	2E-21		0.023419296	[0.019-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
780	chr6	25559897	25559898	rs214054	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	6p22.2	LRRC16A	rs214054-G	0.443918	2E-42		0.03662669	[0.031-0.042] unit decrease	Affymetrix [93095623] (imputed)	N
780	chr6	25575401	25575402	rs926326	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	6p22.2	LRRC16A	rs926326-G	0.7726	9E-28		0.0474824	[0.039-0.056] unit decrease	Affymetrix [~ 2500000] (imputed)	N
780	chr6	25578432	25578433	rs75580845	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	6p22.2		rs75580845-T	0.908891	2E-9		0.0414867	[0.028-0.055] unit increase	NR [11722792] (imputed)	N
780	chr6	25578432	25578433	rs75580845	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	6p22.2	LRRC16A	rs75580845-T	0.9226	1E-20		0.0203	[0.016-0.025] unit increase	Affymetrix, Illumina [33811881] (imputed)	N
780	chr6	25586945	25586946	rs28393611	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium HDL	115,082 European ancestry individuals	NA	6p22.2		rs28393611-C	0.708854	4E-8		0.0244871	[0.016-0.033] unit decrease	NR [11722792] (imputed)	N
780	chr6	25588814	25588815	rs13212936	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.2	NR	rs13212936-?	NR	1E-6		4.855	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
780	chr6	25591040	25591041	rs75063949	30087453	Yilmaz Z	2018-08-07	Mol Psychiatry	Examination of the shared genetic basis of anorexia nervosa and obsessive-compulsive disorder.	Anorexia nervosa or obsessive-compulsive disorder	3,495 European ancestry anorexia nervosa cases, 2,688 European ancestry obsessive-compulsive disorder cases, 18,013 European ancestry controls	NA	6p22.2	LRRC16A	rs75063949-?	NR	2E-7				NR [7461827] (imputed)	N
780	chr6	25597042	25597043	rs9379774	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	6p22.2	LRRC16A	rs9379774-A	0.8429	7E-6		0.0384	[0.022-0.055] unit decrease	NR [8041861] (imputed)	N
780	chr6	25605090	25605091	rs1012899	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p22.2	LRRC16A	rs1012899-G		1E-27		0.027	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
780	chr6	25607570	25607571	rs742132	19503597	Kolz M	2009-06-05	PLoS Genet	Meta-analysis of 28,141 individuals identifies common variants within five new loci that influence uric acid concentrations.	Uric acid levels	12,328 European ancestry males, 15,813 European ancestry females	NA	6p22.2	SCGN, LRRC16A	rs742132-A	0.70	9E-9		0.05	[0.036-0.072] mg/dl increase	Affymetrix, Illumina [2493963] (imputed)	N
780	chr6	25616452	25616453	rs78912080	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	6p22.2	NR	rs78912080-A	0.921213	7E-15		0.030029	[0.022-0.038] unit decrease	NR [NR]	N
780	chr6	25619006	25619007	rs78151190	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	417,580 European ancestry individuals	NA	6p22.2		rs78151190-A	0.871284	3E-9		0.017	[0.011-0.023] unit decrease	NR [7250403] (imputed)	N
780	chr6	25624799	25624800	rs73397619	29374233	Lu AT	2018-01-26	Nat Commun	GWAS of epigenetic aging rates in blood reveals a critical role for TERT.	Intrinsic epigenetic age acceleration	8,393 European ancestry individuals	1,023 African American individuals, 491 Hispanic individuals	6p22.2	LRRC16A, SCGN	rs73397619-C	0.29	2E-10		0.4602	[0.32-0.6] unit decrease	Affymetrix, Illumina [~ 7400000] (imputed)	N
780	chr6	25627657	25627658	rs6905986	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	6p22.2	intergenic	rs6905986-T	0.7768	3E-30		0.04948475	[0.041-0.058] unit increase	Affymetrix [~ 2500000] (imputed)	N
780	chr6	25641199	25641200	rs932316	19084217	Benyamin B	2008-12-17	Am J Hum Genet	Variants in TF and HFE explain approximately 40% of genetic variation in serum-transferrin levels.	Iron status biomarkers	459 European ancestry twin pairs	NA	6p22.2	SCGN	rs932316-?	NR	9E-6	(transferrin saturation)			Illumina [315887]	N
780	chr6	25642576	25642577	rs10447389	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	Intrinsic epigenetic age acceleration	34,461 European ancestry individuals, 6,148 African American individuals	NA	6p22.2	NR	rs10447389-?	NR	4E-14				Affymetrix, Illumina [6211246] (imputed)	N
780	chr6	25642576	25642577	rs10447389	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	Intrinsic epigenetic age acceleration	34,461 European ancestry individuals	NA	6p22.2	NR	rs10447389-A	0.2687	4E-16		0.2764	[0.21-0.34] unit decrease	Affymetrix, Illumina [7567980] (imputed)	N
780	chr6	25657290	25657291	rs115809796	28334935	Raffield LM	2017-05-15	Hum Mol Genet	Genome-wide association study of iron traits and relation to diabetes in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL): potential genomic intersection of iron and glucose regulation?	Iron status biomarkers (iron levels)	12,580 Hispanic/Latino individuals	NA	6p22.2	SCGN	rs115809796-A	NR	4E-9		0.308	[0.21-0.41] unit decrease	Illumina [27700000] (imputed)	N
780	chr6	25662872	25662873	rs1321247	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	6p22.2		rs1321247-?	NR	4E-11		0.0221847	[0.016-0.029] unit decrease	NR [6912294] (imputed)	N
780	chr6	25668030	25668031	rs75639901	28736931	Rotroff DM	2017-07-24	Clin Pharmacol Ther	Genetic Variants in HSD17B3, SMAD3, and IPO11 Impact Circulating Lipids in Response to Fenofibrate in Individuals With Type 2 Diabetes.	Total cholesterol change in response to fenofibrate in statin-treated type 2 diabetes	781 European ancestry individuals, 138 African American ancestry individuals, 345 unknown ancestry individuals		6p22.2	SCGN	rs75639901-?	NR	5E-7	(AA)	0.039	unit increase	Affymetrix, Illumina [8129838] (imputed)	N
780	chr6	25671845	25671846	rs4712953	31738745	Gibson J	2019-11-18	PLoS Genet	A meta-analysis of genome-wide association studies of epigenetic age acceleration.	Intrinsic epigenetic age acceleration	13,493 European ancestry individuals	NA	6p22.2	NR	rs4712953-A	0.7245	4E-9		0.3464	[0.23-0.46] unit increase	Illumina [5932107] (imputed)	N
780	chr6	25673272	25673273	rs72838866	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Liver iron content	32,858 European ancestry individuals	NA	6p22.2	SCGN	rs72838866-?	NR	6E-97	(conditional)	0.237	NR mg/g decrease	Affymetrix [9390170] (imputed)	N
780	chr6	25676396	25676397	rs1074707	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	6p22.2	SCGN	rs1074707-A	0.747889	1E-9		0.017339388	[0.012-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
780	chr6	25683279	25683280	rs1883259	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6p22.2	SCGN	rs1883259-A	NR	2E-8		0.0212983	[0.014-0.029] unit decrease	Affymetrix [321114] (imputed)	N
780	chr6	25684404	25684405	rs4711092	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6p22.2	SCGN	rs4711092-T	NR	4E-9		0.0182815	[0.012-0.024] unit decrease	Affymetrix [321114] (imputed)	N
780	chr6	25684605	25684606	rs13191296	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	6p22.2	NR	rs13191296-T	0.06	6E-11		1.22	[1.16-1.28]	Illumina [8468885] (imputed)	N
780	chr6	25684605	25684606	rs13191296	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Squamous cell lung carcinoma	7,426 European ancestry cases, 55,627 European ancestry controls	NA	6p22.2	SCGN	rs13191296-T	0.066698384	3E-10		1.26845	[1.17795334-1.365899251]	Illumina [10439017] (imputed)	N
780	chr6	25684605	25684606	rs13191296	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in ever smokers	23,223 European ancestry cases,  16,964 European ancestry controls	NA	6p22.2	SCGN	rs13191296-T	0.064634889	1E-7		1.1728821	[1.105269802-1.244630352]	Illumina [10439017] (imputed)	N
780	chr6	25685878	25685878	rs71544650	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.2	NR	rs71544650-?		4E-8	(Cingulate gyrus)			NR [8955960] (imputed)	N
781	chr6	25690935	25690936	rs34438249	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	6p22.2	Intergenic	rs34438249-C	0.7634	5E-9		0.0134	[0.0089-0.0179] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
781	chr6	25701967	25701967	rs5875060	29551627	Hawcutt DB	2018-03-15	Lancet Respir Med	Susceptibility to corticosteroid-induced adrenal suppression: a genome-wide association study.	Peak cortisol response to low dose short synacthen test in corticosteroid treated asthma	407 European ancestry child cases	NA	6p22.2	SCGN	rs5875060-?	NR	8E-8				Illumina [430492]	N
781	chr6	25710570	25710571	rs68006638	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	6p22.2	SCGN	rs68006638-G	0.903995	2E-10		0.0208037	[0.014-0.027] unit increase	Affymetrix [NR] (imputed)	N
781	chr6	25710570	25710571	rs68006638	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	6p22.2	NR	rs68006638-A	0.0863312632336129	2E-12		0.014827733	[0.011-0.019] unit decrease	NR [NR]	N
781	chr6	25710570	25710571	rs68006638	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	6p22.2	NR	rs68006638-A	0.0863312632336129	2E-12		0.019228972	[0.014-0.025] unit decrease	NR [NR]	N
781	chr6	25710570	25710571	rs68006638	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	6p22.2	NR	rs68006638-A	0.0863312632336129	7E-12		0.015880482	[0.011-0.02] unit decrease	NR [NR]	N
781	chr6	25710570	25710571	rs68006638	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	6p22.2	NR	rs68006638-A	0.0863312632336129	2E-12		0.012539359	[0.009-0.016] unit decrease	NR [NR]	N
781	chr6	25710570	25710571	rs68006638	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p22.2	NR	rs68006638-A	0.0938	6E-7		0.0102	[0.0063-0.0141] unit decrease	NR [7666894] (imputed)	N
781	chr6	25710570	25710571	rs68006638	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p22.2	NR	rs68006638-A	0.0774	2E-7	(EA)	0.0646	[0.04-0.089] unit decrease	Illumina [~ 11800000] (imputed)	N
781	chr6	25712495	25712496	rs115902543	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	6p22.2		rs115902543-A	0.014609	1E-9		0.059719272	[0.04-0.079] unit decrease	Affymetrix [93095623] (imputed)	N
781	chr6	25712495	25712496	rs115902543	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	6p22.2		rs115902543-A	0.014599	4E-19		0.0829581	[0.065-0.101] unit increase	Affymetrix [93095623] (imputed)	N
781	chr6	25715656	25715657	rs116009877	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	6p22.2		rs116009877-G	0.92883	3E-18		0.068655	[0.053-0.084] unit decrease	NR [11722792] (imputed)	N
781	chr6	25715656	25715657	rs116009877	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	6p22.2		rs116009877-G	0.92883	3E-13		0.0577374	[0.042-0.073] unit decrease	NR [11722792] (imputed)	N
781	chr6	25715656	25715657	rs116009877	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	6p22.2		rs116009877-G	0.92883	5E-16		0.0629252	[0.048-0.078] unit increase	NR [11722792] (imputed)	N
781	chr6	25715656	25715657	rs116009877	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	6p22.2		rs116009877-G	0.92883	9E-11		0.0526389	[0.037-0.069] unit increase	NR [11722792] (imputed)	N
781	chr6	25715656	25715657	rs116009877	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	6p22.2		rs116009877-G	0.928827	2E-10		0.0520972	[0.036-0.068] unit increase	NR [11722792] (imputed)	N
781	chr6	25715656	25715657	rs116009877	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	6p22.2		rs116009877-G	0.92883	7E-9		0.0461984	[0.031-0.062] unit increase	NR [11722792] (imputed)	N
781	chr6	25715656	25715657	rs116009877	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	6p22.2		rs116009877-G	0.92883	1E-14		0.0620084	[0.046-0.078] unit increase	NR [11722792] (imputed)	N
781	chr6	25715656	25715657	rs116009877	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	6p22.2		rs116009877-G	0.92883	2E-12		0.0560249	[0.04-0.072] unit increase	NR [11722792] (imputed)	N
781	chr6	25715656	25715657	rs116009877	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	6p22.2		rs116009877-G	0.92883	4E-8		0.0420324	[0.027-0.057] unit increase	NR [11722792] (imputed)	N
781	chr6	25715656	25715657	rs116009877	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	6p22.2	intergenic	rs116009877-A	0.0533	2E-15		0.0533	[0.04-0.066] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
781	chr6	25715656	25715657	rs116009877	28334935	Raffield LM	2017-05-15	Hum Mol Genet	Genome-wide association study of iron traits and relation to diabetes in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL): potential genomic intersection of iron and glucose regulation?	Iron status biomarkers (transferrin saturation)	12,589 Hispanic/Latino individuals	NA	6p22.2	SCGN, HIST1H2AA	rs116009877-G	NR	6E-12		0.366	[0.26-0.47] unit decrease	Illumina [27700000] (imputed)	N
781	chr6	25715656	25715657	rs116009877	28334935	Raffield LM	2017-05-15	Hum Mol Genet	Genome-wide association study of iron traits and relation to diabetes in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL): potential genomic intersection of iron and glucose regulation?	Iron status biomarkers (total iron binding capacity)	12,586 Hispanic/Latino individuals	NA	6p22.2	SCGN, HIST1H2AA	rs116009877-G	NR	4E-14		0.478	[0.35-0.6] unit increase	Illumina [27700000] (imputed)	N
781	chr6	25715656	25715657	rs116009877	27846281	Galesloot TE	2016-11-15	PLoS One	Meta-GWAS and Meta-Analysis of Exome Array Studies Do Not Reveal Genetic Determinants of Serum Hepcidin.	Hepcidin/ferritin ratio	1495 European ancestry individuals without iron deficiency or clinical inflammation, 324 European ancestry individuals, 1206 Val Borbera (founder/genetic isolated) individuals without iron deficiency or clinical inflammation, 274 Val Borbera (founder/genetic isolated) individuals, 2,695 European ancestry individuals without iron deficiency or clinical inflammation, 207 individuals	NA	6p22.2	HIST1H2AA	rs116009877-A	0.0636	4E-13	(Subset)	0.3133	[0.23-0.4] unit decrease	Illumina [up to 38043574] (imputed)	N
781	chr6	25723526	25723527	rs6922556	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ALB	5,345 Icelandic ancestry individuals	NA	6p22.2		rs6922556-G	0.4167	4E-13		0.120468	[0.088-0.153] unit decrease	Illumina [7506463] (imputed)	N
781	chr6	25734919	25734920	rs3923725	30026463	Sahibdeen V	2018-07-19	Nutr Diabetes	Genetic variants in SEC16B are associated with body composition in black South Africans.	Body composition traits	1,421 South African ancestry females, 505 South African ancestry males	NA	6p22.2	SLC17A1	rs3923725-A	0.01	6E-13	(M, Waist-to-hip ratio)	0.16	[0.12-0.2] unit increase	Illumina [125878]	N
781	chr6	25736697	25736698	rs79154996	34854908	Veluchamy A	2021-12-01	JAMA Netw Open	Association of Genetic Variant at Chromosome 12q23.1 With Neuropathic Pain Susceptibility.	Neuropathic pain	4,512 European ancestry cases, 428,489 European ancestry controls	NA	6p22.2		rs79154996-G	0.975	2E-6		0.781	[0.707-0.864]	Affymetrix, Illumina [NR] (imputed)	N
781	chr6	25758211	25758212	rs9295669	33713768	Akenroye AT	2021-03-10	J Allergy Clin Immunol	Genome-wide Association study of Asthma, Total IgE, and Lung function in a Cohort of Peruvian Children.	Serum IgE levels	727 Peruvian individuals	NA	6p22.2		rs9295669-?	NR	7E-7		0.201	unit decrease	Illumina [NR] (imputed)	N
781	chr6	25759065	25759066	rs12212049	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite modules (eigenmetabolites) in chronic kidney disease	1,221 cases	406 cases	6p22.2	SLC17A1, SLC17A3, SLC17A4	rs12212049-T	0.44	7E-12	(X-12822, X-17682, X-19913, X-24339, X-24588)	0.006	[0.004-0.008] unit decrease	Illumina [7750367] (imputed)	N
781	chr6	25759065	25759066	rs12212049	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	6p22.2	SLC17A4	rs12212049-T	0.4572	4E-11	(South Asian)	0.1343	[0.095-0.174] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
781	chr6	25762645	25762646	rs3799340	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	6p22.2	SLC17A1, SLC17A3, SLC17A4	rs3799340-T	0.45	8E-32	(isocaproylglutamine)	0.353	[0.29-0.41] unit decrease	Illumina [7750367] (imputed)	N
781	chr6	25762645	25762646	rs3799340	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	6p22.2	SLC17A1, SLC17A3, SLC17A4	rs3799340-T	0.45	8E-20	(X - 23196)	0.246	[0.19-0.3] unit decrease	Illumina [7750367] (imputed)	N
781	chr6	25765389	25765390	rs1317816	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Tenofovir clearance in HIV infection	243 European ancestry cases, 149 African American cases, 100 Hispanic American cases, 9 unknown ancestry cases	NA	6p22.2	NR	rs1317816-?		5E-6	(EA)			Illumina [~ 5190000] (imputed)	N
781	chr6	25768991	25768992	rs1892249	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite modules (eigenmetabolites) in chronic kidney disease	1,221 cases	406 cases	6p22.2	SLC17A1, SLC17A3, SLC17A4	rs1892249-G	0.45	2E-30	(heptanoylglutamine, hexanoylglutamine, isocaproylglutamine, N-octanoylglutamine, X-12636, X-12839, X-24347, X-24350)	0.009	[0.007-0.011] unit decrease	Illumina [7750367] (imputed)	N
781	chr6	25768991	25768992	rs1892249	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	6p22.2	SLC17A1, SLC17A3, SLC17A4	rs1892249-G	0.45	2E-11	(X - 24350)	0.373	[0.26-0.48] unit decrease	Illumina [7750367] (imputed)	N
781	chr6	25768991	25768992	rs1892249	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	6p22.2	SLC17A1, SLC17A3, SLC17A4	rs1892249-G	0.45	1E-22	(X - 12839)	0.392	[0.31-0.47] unit decrease	Illumina [7750367] (imputed)	N
781	chr6	25769023	25769024	rs1892250	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	6p22.2	SLC17A4	rs1892250-T	NR	4E-9		0.027502349	[0.018-0.037] unit increase	Affymetrix [NR]	N
781	chr6	25770706	25770707	rs4712970	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p22.2	SLC17A4	rs4712970-A		3E-70		0.042	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
781	chr6	25770865	25770866	rs3757130	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	6p22.2	SLC17A1, SLC17A3, SLC17A4	rs3757130-A	0.45	3E-13	(X - 24347)	0.224	[0.16-0.28] unit decrease	Illumina [7750367] (imputed)	N
781	chr6	25772046	25772047	rs4712972	21909108	Bis JC	2011-09-11	Nat Genet	Meta-analysis of genome-wide association studies from the CHARGE consortium identifies common variants associated with carotid intima media thickness and plaque.	Carotid intima media thickness	Up to 31,211 European ancestry individuals	10,553 European ancestry individuals, 687 Orcadian individuals	6p22.2	SLC17A4	rs4712972-A	NR	8E-8	(cIMT)	0.0099	[0.01-0.01] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
781	chr6	25772638	25772639	rs1892252	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	6p22.2	SLC17A4	rs1892252-C	NR	7E-13	(EA)	1.121	[1.09-1.15]	Illumina [6627481] (imputed)	N
781	chr6	25773808	25773809	rs2275906	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in lean individuals	up to 5,529 European ancestry male individuals, up to 9,753 European ancestry female individuals	NA	6p22.2	SLC17A1, SLC17A4, HIST1H2AA	rs2275906-G	0.13	9E-6	(men)	0.125	[0.07-0.18] kg/m2 decrease	Affymetrix, Illumina [at least 188473] (imputed)	N
781	chr6	25775569	25775570	rs28412066	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	6p22.2	SLC17A4	rs28412066-T	0.080344107	2E-8		1.1250569	[1.079912526-1.172088304]	Illumina [10439017] (imputed)	N
781	chr6	25776948	25776949	rs11754288	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	6p22.2	SLC17A3	rs11754288-A	0.44	2E-12	(X-11469)	0.043	[0.031-0.055] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
781	chr6	25776948	25776949	rs11754288	21943158	Middelberg RP	2011-09-24	BMC Med Genet	Genetic variants in LPL, OASL and TOMM40/APOE-C1-C2-C4 genes are associated with multiple cardiovascular-related traits.	Cardiovascular disease risk factors	11,683 European ancestry individuals	NA	6p22.2	SLC17A4	rs11754288-A	0.43	4E-9	(UA)	0.084	[0.057-0.111] umol/l decrease	Illumina [NR] (imputed)	N
781	chr6	25777480	25777481	rs9356988	30367059	Teumer A	2018-10-26	Nat Commun	Genome-wide analyses identify a role for SLC17A4 and AADAT in thyroid hormone regulation.	Free thyroxine concentration	49,269 European ancestry individuals	up to 22,383 European ancestry individuals	6p22.2	SLC17A4	rs9356988-A	0.27	6E-14		0.052	[0.038-0.066] unit decrease	Affymetrix, Illumina [8048941] (imputed)	N
781	chr6	25779735	25779736	rs3734526	31272903	Sunadome H	2019-07-01	Allergol Int	Correlation between eosinophil count, its genetic background and body mass index: The Nagahama Study.	Eosinophil counts	4,650 East Asian ancestry individuals	NA	6p22.2	NR	rs3734526-C	0.08	6E-8		0.2013	NR unit increase	Illumina [103680] (imputed)	N
781	chr6	25779735	25779736	rs3734526	31272903	Sunadome H	2019-07-01	Allergol Int	Correlation between eosinophil count, its genetic background and body mass index: The Nagahama Study.	Eosinophil counts	4,206 East Asian ancestry individuals	NA	6p22.2	NR	rs3734526-C	0.08	2E-6		0.1851	NR unit increase	Illumina [103680] (imputed)	N
781	chr6	25783314	25783315	rs3923	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	6p22.2	SLC17A1	rs3923-T	0.42	4E-18		8.69	z-score increase	Affymetrix [4311822] (imputed)	N
781	chr6	25784480	25784481	rs12662869	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Tenofovir clearance in HIV infection	243 European ancestry cases, 149 African American cases, 100 Hispanic American cases, 9 unknown ancestry cases	NA	6p22.2	SLC17A1	rs12662869-?		7E-9				Illumina [~ 5190000] (imputed)	N
781	chr6	25785873	25785874	rs77735344	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p22.2	SLC17A1	rs77735344-T	NR	5E-8		0.0322792	[0.021-0.044] unit decrease	Affymetrix [323123] (imputed)	N
781	chr6	25785990	25785991	rs13197514	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	6p22.2	SLC17A1, SLC17A3, SLC17A4	rs13197514-T	0.45	9E-18	(N-octanoylglutamine)	0.343	[0.26-0.42] unit decrease	Illumina [7750367] (imputed)	N
781	chr6	25786225	25786226	rs13213957	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	6p22.2	NR	rs13213957-T	0.0616302	9E-13		0.09349248	[0.068-0.119] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
781	chr6	25790377	25790378	rs13200921	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Major depressive disorder (MTAG)	119,754 European ancestry individuals	NA			rs13200921-?	NR	2E-9				NR [2625067]	N
781	chr6	25793054	25793055	rs78714229	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6p22.2		rs78714229-T	0.9436	2E-8		0.0172	[0.011-0.023] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
781	chr6	25793054	25793055	rs78714229	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6p22.2	Intergenic	rs78714229-T	0.9436	4E-10	(MTAG)	0.0178	[0.012-0.023] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
781	chr6	25794430	25794431	rs2762353	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	6p22.2		rs2762353-G	NR	7E-276		0.0668	[0.063-0.071] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
781	chr6	25794430	25794431	rs2762353	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	6p22.2	SLC17A1, SLC17A3, SLC17A4	rs2762353-A	0.47	1E-43	(hexanoylglutamine)	0.432	[0.37-0.49] unit decrease	Illumina [7750367] (imputed)	N
781	chr6	25794430	25794431	rs2762353	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	6p22.2	SLC17A1	rs2762353-A	0.1594	2E-24	(East Asian)	0.08	[0.065-0.095] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
781	chr6	25794430	25794431	rs2762353	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals	at least 101,293 European ancestry individuals	6p22.2	SLC17A1	rs2762353-A	0.16	9E-24	(Japanese)	0.054	[0.044-0.064] unit decrease	Illumina [5864938] (imputed)	N
781	chr6	25794430	25794431	rs2762353	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	6p22.2	SLC17A3	rs2762353-A	0.45	3E-13	(4-androsten-3beta,17beta-diol disulfate 2)	0.03	[0.022-0.038] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
781	chr6	25799675	25799676	rs1165213	31985003	Boocock J	2020-01-27	Hum Mol Genet	Genomic dissection of 43 serum urate-associated loci provides multiple insights into molecular mechanisms of urate control.	Urate levels	110,238 European ancestry individuals, 21,471 East Asian individuals	NA	6p22.2	SLC17A1	rs1165213-G		5E-67		0.08	[0.07-0.09] mg/dl decrease	NR [NR] (imputed)	N
781	chr6	25799675	25799676	rs1165213	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	6p22.2	SLC17A1, SLC17A3, SLC17A4	rs1165213-G	0.47	8E-44	(X - 24339)	0.333	[0.29-0.38] unit decrease	Illumina [7750367] (imputed)	N
781	chr6	25801318	25801319	rs1165209	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in overweight individuals	up to 10,058 European ancestry male individuals, up to 7,189 European ancestry female individuals	NA	6p22.2	SLC17A1, SLC17A4	rs1165209-G	0.46	4E-15		0.086	[0.064-0.108] kg/m2 decrease	Affymetrix, Illumina [at least 188473] (imputed)	N
781	chr6	25801318	25801319	rs1165209	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in lean individuals	up to 5,529 European ancestry male individuals, up to 9,753 European ancestry female individuals	NA	6p22.2	SLC17A1, SLC17A4	rs1165209-G	0.46	3E-13		0.085	[0.061-0.109] kg/m2 decrease	Affymetrix, Illumina [at least 188473] (imputed)	N
781	chr6	25801318	25801319	rs1165209	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in lean individuals	up to 5,529 European ancestry male individuals, up to 9,753 European ancestry female individuals	NA	6p22.2	SLC17A1, SLC17A4	rs1165209-G	0.46	1E-11	(Women)	0.096	[0.069-0.123] kg/m2 decrease	Affymetrix, Illumina [at least 188473] (imputed)	N
781	chr6	25802082	25802083	rs2328895	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	6p22.2	SLC17A1	rs2328895-C	0.314048	7E-24	(N-acetyltryptophan)	0.242	[0.19-0.29] unit decrease	Illumina [13039987] (imputed)	N
781	chr6	25802082	25802083	rs2328895	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	6p22.2	SLC17A1	rs2328895-C	0.314048	1E-14	(N-acetylkynurenine (2))	0.187	[0.14-0.23] unit decrease	Illumina [13039987] (imputed)	N
781	chr6	25802082	25802083	rs2328895	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	1,509 European ancestry individuals	6p22.2	SLC17A1	rs2328895-C	0.314048	7E-24	(N-acetyltryptophan)	0.242	[0.19-0.29] unit decrease	Illumina [13039987] (imputed)	N
781	chr6	25802082	25802083	rs2328895	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	1,509 European ancestry individuals	6p22.2	SLC17A1	rs2328895-C	0.314048	1E-14	(N-acetylkynurenine (2))	0.187	[0.14-0.23] unit decrease	Illumina [13039987] (imputed)	N
781	chr6	25803711	25803712	rs9467603	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	6p22.2	SLC17A1	rs9467603-A	NR	9E-10		0.030650508	[0.021-0.04] unit decrease	Affymetrix [NR]	N
781	chr6	25807602	25807603	rs2817188	32238385	Nakayama A	2020-04-01	Ann Rheum Dis	Subtype-specific gout susceptibility loci and enrichment of selection pressure on ABCG2 and ALDH2 identified by subtype genome-wide meta-analyses of clinically defined gout patients.	Gout	3,053 Japanese ancestry male cases, 4,554 Japanese ancestry male controls	NA	6p22.2	SLC17A1	rs2817188-G	0.825	1E-8		1.35	[1.22-1.50]	Illumina [7206774] (imputed)	N
781	chr6	25807602	25807603	rs2817188	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	6p22.2	SLC17A1, SLC17A3, SLC17A4	rs2817188-A	0.47	5E-21	(X - 23518)	0.594	[0.47-0.72] unit decrease	Illumina [7750367] (imputed)	N
781	chr6	25807602	25807603	rs2817188	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	6p22.2	SLC17A1, SLC17A3, SLC17A4	rs2817188-A	0.47	2E-20	(heptanoylglutamine)	0.537	[0.42-0.65] unit decrease	Illumina [7750367] (imputed)	N
781	chr6	25807602	25807603	rs2817188	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	6p22.2	SLC17A1, SLC17A3, SLC17A4	rs2817188-A	0.47	1E-32	(ferulic acid 4-sulfate)	0.534	[0.45-0.62] unit decrease	Illumina [7750367] (imputed)	N
781	chr6	25809068	25809069	rs1177442	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	6p22.2	SLC17A1	rs1177442-A	0.313227	3E-14	(21-hydroxypregnenolone disulfate)	0.185	[0.14-0.23] unit increase	Illumina [13039987] (imputed)	N
781	chr6	25809068	25809069	rs1177442	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	1,509 European ancestry individuals	6p22.2	SLC17A1	rs1177442-A	0.313227	3E-14	(21-hydroxypregnenolone disulfate)	0.185	[0.14-0.23] unit increase	Illumina [13039987] (imputed)	N
781	chr6	25809715	25809716	rs1359232	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	6p22.2	SLC17A1	rs1359232-A	0.4007	6E-159		0.0891	[0.083-0.096] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
781	chr6	25809715	25809716	rs1359232	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	6p22.2	SLC17A1	rs1359232-A	0.466	4E-126		0.090844	[0.083-0.098] mg/dL decrease	Affymetrix, Illumina [8217339] (imputed)	N
781	chr6	25809715	25809716	rs1359232	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	6p22.2	NR	rs1359232-A	0.4033	1E-60	(women)	0.079	[0.07-0.088] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
781	chr6	25809715	25809716	rs1359232	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	6p22.2	NR	rs1359232-A	0.3886	2E-68	(men)	0.0943	[0.084-0.105] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
781	chr6	25809715	25809716	rs1359232	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Gout	13,179 European, African American and unknown ancestry cases, 750,634 European, African American and unknown ancestry controls	NA	6p22.2	SLC17A4	rs1359232-?	NR	8E-32	(EA)			Affymetrix, Illumina [8249849] (imputed)	N
781	chr6	25812068	25812069	rs10498730	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	6p22.2	SLC17A1	rs10498730-A	NR	4E-8		0.035125487	[0.023-0.048] unit increase	Affymetrix [NR]	N
781	chr6	25813149	25813150	rs1165196	33832965	Sandoval-Plata G	2021-04-08	Ann Rheum Dis	Variants in urate transporters, ADH1B, GCKR and MEPE genes associate with transition from asymptomatic hyperuricaemia to gout: results of the first gout versus asymptomatic hyperuricaemia GWAS in Caucasians using data from the UK Biobank.	Gout	7,049 European ancestry cases, 64,424 European ancestry controls	NA	6p22.2	SLC17A1	rs1165196-G	0.43	5E-36		0.78	[0.75-0.81]	Affymetrix [710030]	N
781	chr6	25813149	25813150	rs1165196	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	6p22.2	NR	rs1165196-A	0.57	5E-295		0.0672	[0.064-0.071] unit increase	NR [NR]	N
781	chr6	25813149	25813150	rs1165196	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum uric acid levels	109,029 Japanese ancestry individuals	NA	6p22.2	SLC17A1	rs1165196-?	NR	1E-19		0.05158	[0.04-0.063] unit increase novel	Illumina [6108953] (imputed)	N
781	chr6	25813149	25813150	rs1165196	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in overweight individuals	up to 10,058 European ancestry male individuals, up to 7,189 European ancestry female individuals	NA	6p22.2	SLC17A1, SLC17A4	rs1165196-G	0.46	1E-9	(men)	0.086	[0.059-0.113] kg/m2 decrease	Affymetrix, Illumina [at least 188473] (imputed)	N
781	chr6	25813149	25813150	rs1165196	21983786	Sulem P	2011-10-09	Nat Genet	Identification of low-frequency variants associated with gout and serum uric acid levels.	Serum uric acid levels	15,506 European ancestry individuals	NA	6p22.2	SLC17A cluster	rs1165196-A	0.492	3E-6		0.05	[0.03-0.07] s.d. increase	Illumina [15957390] (imputed)	N
781	chr6	25813149	25813150	rs1165196	20884846	Yang Q	2010-09-30	Circ Cardiovasc Genet	Multiple genetic loci influence serum urate levels and their relationship with gout and cardiovascular disease risk factors.	Urate levels	28,283 European ancestry individuals	22,054 European ancestry individuals	6p22.2	SLC17A1	rs1165196-G	0.46	5E-25	(Urate)	6.21	[5.03-7.39] umol/l decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
781	chr6	25815079	25815080	rs1165195	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	129,405 East Asian ancestry individuals	NA	6p22.2		rs1165195-G	0.839992	5E-44		0.0663006	[0.057-0.076] unit increase	Illumina [13475706] (imputed)	N
781	chr6	25818587	25818588	rs1185567	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite ratios	Up to 5,591 European ancestry individuals	Up to 1,767 European ancestry individuals	6p22.2	SLC17A3	rs1185567-A	0.44	1E-26	(DHEA-S/4-androsten-3beta,17beta-diol disulfate 2)	0.028	[0.022-0.034] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
781	chr6	25818645	25818646	rs1183200	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	6p22.2	SLC17A1	rs1183200-G	0.315206	9E-42	(hexanoylglutamine)	0.324	[0.28-0.37] unit decrease	Illumina [13039987] (imputed)	N
781	chr6	25818754	25818755	rs9461218	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite modules (eigenmetabolites) in chronic kidney disease	1,221 cases	406 cases	6p22.2	SLC17A1, SLC17A3, SLC17A4	rs9461218-A	0.23	9E-18	(3-(4-hydroxyphenyl)lactate, 4-hydroxyphenylpyruvate, indolelactate, phenyllactate(PLA), X-16071)	0.009	[0.007-0.011] unit decrease	Illumina [7750367] (imputed)	N
781	chr6	25818754	25818755	rs9461218	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite modules (eigenmetabolites) in chronic kidney disease	1,221 cases	406 cases	6p22.2	SLC17A1, SLC17A3, SLC17A4	rs9461218-A	0.23	2E-12	(X-13529, X-15497, X-18889, X-19561, X-22102)	0.007	[0.005-0.009] unit decrease	Illumina [7750367] (imputed)	N
781	chr6	25818754	25818755	rs9461218	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	6p22.2	SLC17A1, SLC17A3, SLC17A4	rs9461218-A	0.23	3E-13	(X - 19561 )	0.259	[0.19-0.33] unit decrease	Illumina [7750367] (imputed)	N
781	chr6	25818754	25818755	rs9461218	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	6p22.2	SLC17A1, SLC17A3, SLC17A4	rs9461218-A	0.23	1E-13	(X - 15497 )	0.293	[0.22-0.37] unit decrease	Illumina [7750367] (imputed)	N
781	chr6	25818754	25818755	rs9461218	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling guilty	373,380 European ancestry individuals	NA	6p22.2	SLC17A4	rs9461218-A	0.247866	1E-8		5.73	z score decrease	NR [10847151] (imputed)	N
781	chr6	25818765	25818766	rs1165152	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	6p22.2	SLC17A1, SLC17A3, SLC17A4	rs1165152-A	0.47	6E-12	(X - 21829)	0.173	[0.12-0.22] unit decrease	Illumina [7750367] (imputed)	N
781	chr6	25818765	25818766	rs1165152	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	6p22.2	SLC17A1, SLC17A3, SLC17A4	rs1165152-A	0.47	5E-46	(X - 12822)	0.299	[0.26-0.34] unit decrease	Illumina [7750367] (imputed)	N
781	chr6	25818765	25818766	rs1165152	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	6p22.2	SLC17A1, SLC17A3, SLC17A4	rs1165152-A	0.47	4E-11	(pyridoxal)	0.39	[0.27-0.51] unit decrease	Illumina [7750367] (imputed)	N
781	chr6	25818765	25818766	rs1165152	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	6p22.2	SLC17A1, SLC17A3, SLC17A4	rs1165152-A	0.47	2E-11	(X - 18938)	0.351	[0.25-0.45] unit decrease	Illumina [7750367] (imputed)	N
781	chr6	25818765	25818766	rs1165152	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in overweight individuals	up to 10,058 European ancestry male individuals, up to 7,189 European ancestry female individuals	NA	6p22.2	SLC17A1, SLC17A4, SLC17A3	rs1165152-G	0.54	1E-7	(women)	0.088	[0.055-0.121] kg/m2 increase	Affymetrix, Illumina [at least 188473] (imputed)	N
781	chr6	25820438	25820439	rs17270561	19084217	Benyamin B	2008-12-17	Am J Hum Genet	Variants in TF and HFE explain approximately 40% of genetic variation in serum-transferrin levels.	Iron status biomarkers	459 European ancestry twin pairs	NA	6p22.2	SLC17A1	rs17270561-?	NR	5E-7	(transferrin saturation)			Illumina [315887]	N
782	chr6	25821615	25821616	rs1165151	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	6p22.2	SLC17A1, SLC17A3, SLC17A4	rs1165151-T	0.49	2E-14	(X - 13866)	0.594	[0.44-0.75] unit decrease	Illumina [7750367] (imputed)	N
782	chr6	25821615	25821616	rs1165151	23263486	Kottgen A	2012-12-23	Nat Genet	Genome-wide association analyses identify 18 new loci associated with serum urate concentrations.	Urate levels	49,825 European ancestry males, 60,522 European ancestry females	Up to 32,813 European ancestry individuals	6p22.2	SLC17A1, SLC17A3	rs1165151-T	0.47	7E-70		0.091	[0.081-0.101] mg/dl decrease	Affymetrix, Illumina, Perlegen [2450547] (imputed)	N
782	chr6	25821769	25821770	rs17342717	21208937	Pichler I	2011-01-04	Hum Mol Genet	Identification of a common variant in the TFR2 gene implicated in the physiological regulation of serum iron levels.	Iron status biomarkers	Up to 5,633 European ancestry individuals	Up to 3,457 European ancestry individuals	6p22.2	SLC17A1	rs17342717-C	0.93	5E-9	(ferritin)	36.5	[24.27-48.73] ng/ml decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
782	chr6	25821769	25821770	rs17342717	21149283	Oexle K	2010-12-10	Hum Mol Genet	Novel association to the proprotein convertase PCSK7 gene locus revealed by analysing soluble transferrin receptor (sTfR) levels.	Iron status biomarkers	Up to 6,616 individuals	NA	6p22.2	HFE	rs17342717-T	NR	9E-10	(ferritin)	0.087	[0.06-0.12] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
782	chr6	25821769	25821770	rs17342717	20927387	Kullo IJ	2010-09-28	PLoS One	A genome-wide association study of red blood cell traits using the electronic medical record.	Red blood cell traits	3,012 European ancestry individuals	NA	6p22.2	SLC17A1	rs17342717-T	0.10	5E-8	(MCH)	0.38	[0.24-0.52] unit increase	Illumina [489421]	N
782	chr6	25821806	25821807	rs1747522	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	6p22.2	SLC17A1, SLC17A3, SLC17A4	rs1747522-T	0.48	6E-13	(X - 18888)	0.229	[0.17-0.29] unit decrease	Illumina [7750367] (imputed)	N
782	chr6	25822660	25822661	rs13201341	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.2	SLC17A1	rs13201341-T	NR	6E-10		6.181	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
782	chr6	25823443	25823444	rs1183201	19503597	Kolz M	2009-06-05	PLoS Genet	Meta-analysis of 28,141 individuals identifies common variants within five new loci that influence uric acid concentrations.	Uric acid levels	12,328 European ancestry males, 15,813 European ancestry females	NA	6p22.2	SLC17A1	rs1183201-A	0.48	3E-14		0.06	[0.459-0.078] mg/dl decrease	Affymetrix, Illumina [2493963] (imputed)	N
782	chr6	25824808	25824809	rs9467618	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phenylalanine levels	115,030 European ancestry individuals	NA	6p22.2		rs9467618-C	0.744664	5E-10		0.0294993	[0.02-0.039] unit increase	NR [11722792] (imputed)	N
782	chr6	25827515	25827516	rs1165178	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals, at least 88,461 European ancestry individuals	NA	6p22.2	SLC17A1	rs1165178-A	0.508	3E-66	(EA)	0.065714285	[0.058-0.073] unit decrease	Illumina [1986983] (imputed)	N
782	chr6	25827515	25827516	rs1165178	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals, at least 88,461 European ancestry individuals	NA	6p22.2	SLC17A1	rs1165178-A	0.162	1E-22	(Japanese)	0.0527	[0.042-0.063] unit decrease	Illumina [1986983] (imputed)	N
782	chr6	25828241	25828242	rs765285	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	6p22.2	SLC17A1, SLC17A3, SLC17A4	rs765285-G	0.49	4E-14	(gamma-CEHC sulfate)	0.498	[0.37-0.63] unit decrease	Illumina [7750367] (imputed)	N
782	chr6	25830297	25830298	rs1165176	27899376	Nakayama A	2016-11-29	Ann Rheum Dis	GWAS of clinically defined gout and subtypes identifies multiple susceptibility loci that include urate transporter genes.	Gout	945 Japanese ancestry cases, 1,213 Japanese ancestry controls	1,396 Japanese ancestry cases, 1,268 Japanese ancestry controls, 1,319 European ancestry cases, 514 European ancestry controls, 971 Polynesian ancestry cases, 565 Polynesian ancestry controls	6p22.2	SLC17A1	rs1165176-G	0.834	1E-9	(Japanese)	1.42	[1.27-1.59]	Illumina [570442]	N
782	chr6	25835439	25835440	rs11306142	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	6p22.2	SLC17A1, SLC17A3	rs11306142-CA	0.406965	5E-13	(5alpha-androstan-3beta,17alpha-diol disulfate)	0.165	[0.12-0.21] unit increase	Illumina [13039987] (imputed)	N
782	chr6	25835439	25835440	rs11306142	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	1,509 European ancestry individuals	6p22.2	SLC17A1, SLC17A3	rs11306142-CA	0.406965	5E-13	(5alpha-androstan-3beta,17alpha-diol disulfate)	0.165	[0.12-0.21] unit increase	Illumina [13039987] (imputed)	N
782	chr6	25842031	25842032	rs1165150	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	6p22.2	SLC17A1, SLC17A3	rs1165150-C	0.325786	2E-14	(androstenediol (3beta,17beta) disulfate (2))	0.184	[0.14-0.23] unit increase	Illumina [13039987] (imputed)	N
782	chr6	25842031	25842032	rs1165150	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	1,509 European ancestry individuals	6p22.2	SLC17A1, SLC17A3	rs1165150-C	0.325786	2E-14	(androstenediol (3beta,17beta) disulfate (2))	0.184	[0.14-0.23] unit increase	Illumina [13039987] (imputed)	N
782	chr6	25842031	25842032	rs1165150	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite modules (eigenmetabolites) in chronic kidney disease	1,221 cases	406 cases	6p22.2	SLC17A1, SLC17A3, SLC17A4	rs1165150-C	0.49	2E-11	(3-hydroxysebacate, X-13874, X-18888, X-18938, X-21827)	0.006	[0.004-0.008] unit decrease	Illumina [7750367] (imputed)	N
782	chr6	25842202	25842203	rs4712976	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	6p22.2	NR	rs4712976-C	0.732442	3E-11		0.0186329	[0.013-0.024] unit increase	Affymetrix [16585745] (imputed)	N
782	chr6	25842202	25842203	rs4712976	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Tenofovir clearance in HIV infection	243 European ancestry cases, 149 African American cases, 100 Hispanic American cases, 9 unknown ancestry cases	NA	6p22.2	NR	rs4712976-?		8E-6	(EA)			Illumina [~ 5190000] (imputed)	N
782	chr6	25842950	25842951	rs1408272	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular hemoglobin	up to 21,020 European ancestry individuals, up to 3,621 African American individuals, up to 15,062 East Asian individuals.	16,389 individuals of European and African American ancestry.	6p22.2	HFE, HIST1H1T	rs1408272-?	NR	3E-31				NR [2500000] (imputed)	N
782	chr6	25842950	25842951	rs1408272	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Hematocrit	up to 40,258 European ancestry individuals, up to 16,128 African American individuals, up to 15,252 East Asian ancestry individuals.	16,389 European and African American individuals	6p22.2	HFE, HIST1H1T	rs1800562-?	NR	1E-8				NR [2500000] (imputed)	N
782	chr6	25842950	25842951	rs1408272	27846281	Galesloot TE	2016-11-15	PLoS One	Meta-GWAS and Meta-Analysis of Exome Array Studies Do Not Reveal Genetic Determinants of Serum Hepcidin.	Hepcidin/ferritin ratio	1495 European ancestry individuals without iron deficiency or clinical inflammation, 324 European ancestry individuals, 1206 Val Borbera (founder/genetic isolated) individuals without iron deficiency or clinical inflammation, 274 Val Borbera (founder/genetic isolated) individuals, 2,695 European ancestry individuals without iron deficiency or clinical inflammation, 207 individuals	NA	6p22.2	SLC17A3	rs1408272-T	0.9388	3E-14		0.307	[0.23-0.39] unit increase	Illumina [up to 38043574] (imputed)	N
782	chr6	25842950	25842951	rs1408272	23222517	van der Harst P	2012-12-05	Nature	Seventy-five genetic loci influencing the human red blood cell.	Red blood cell traits	62,553 European ancestry individuals, 9,308 South Asian ancestry individuals	63,506 European ancestry individuals	6p22.2	HFE, SLC17A3	rs1408272-G	0.07	5E-67	(EA, MCH)	0.033	[0.015-0.051] unit increase	Affymetrix, Illumina, Perlegen [2711806] (imputed)	N
782	chr6	25842950	25842951	rs1408272	21149283	Oexle K	2010-12-10	Hum Mol Genet	Novel association to the proprotein convertase PCSK7 gene locus revealed by analysing soluble transferrin receptor (sTfR) levels.	Iron status biomarkers	Up to 6,616 individuals	NA	6p22.2	HFE	rs1408272-T	NR	9E-9	(sTfR)	0.038	[0.03-0.05] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
782	chr6	25842950	25842951	rs1408272	19862010	Ganesh SK	2009-10-11	Nat Genet	Multiple loci influence erythrocyte phenotypes in the CHARGE Consortium.	Mean corpuscular hemoglobin	24,167 European ancestry individuals	9,456 European ancestry individuals	6p22.2	SLC17A3	rs1408272-G	NR	4E-39		0.02	[0.01-0.02] pg decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
782	chr6	25842950	25842951	rs1408272	19853236	Ferreira MA	2009-10-22	Am J Hum Genet	Sequence variants in three loci influence monocyte counts and erythrocyte volume.	Mean corpuscular hemoglobin	2,538 European ancestry individuals, 3,477 individuals	1,543 individuals	6p22.2	HFE	rs1408272-T	0.94	1E-11		0.32	[0.22-0.42] s.d. decrease	Illumina, Perlegen [~ 2500000] (imputed)	N
782	chr6	25851368	25851369	rs1165187	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	6p22.2	SLC17A1, SLC17A3, SLC17A4	rs1165187-C	0.25	1E-39	(adenosine 3',5'-cyclic monophosphate (cAMP))	0.219	[0.19-0.25] unit decrease	Illumina [7750367] (imputed)	N
782	chr6	25851528	25851529	rs1747551	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	6p22.2	SLC17A1, SLC17A3, SLC17A4	rs1747551-G	0.25	7E-24	(indolelactate)	0.361	[0.29-0.43] unit decrease	Illumina [7750367] (imputed)	N
782	chr6	25857919	25857920	rs79920061	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p22.2	SLC17A3	rs79920061-A	0.081	6E-27	(N-acetylated-alpha-linked acidic dipeptidase 2, NAALAD2.7986.98.3)	0.48	[0.4-0.56] unit decrease	Affymetrix [10572788] (imputed)	N
782	chr6	25857919	25857920	rs79920061	27846281	Galesloot TE	2016-11-15	PLoS One	Meta-GWAS and Meta-Analysis of Exome Array Studies Do Not Reveal Genetic Determinants of Serum Hepcidin.	Hepcidin/ferritin ratio	1495 European ancestry individuals without iron deficiency or clinical inflammation, 324 European ancestry individuals, 1206 Val Borbera (founder/genetic isolated) individuals without iron deficiency or clinical inflammation, 274 Val Borbera (founder/genetic isolated) individuals, 2,695 European ancestry individuals without iron deficiency or clinical inflammation, 207 individuals	NA	6p22.2	SLC17A3	rs79920061-A	0.0633	2E-14	(Subset)	0.3336	[0.25-0.42] unit decrease	Illumina [up to 38043574] (imputed)	N
782	chr6	25862465	25862466	rs1165165	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	6p22.2	SLC17A3	rs1165165-T	0.240587	1E-24		0.029990446	[0.024-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
782	chr6	25864817	25864818	rs13211947	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Diastolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	6p22.2	SLC17A3	rs13211947-T	0.3528	6E-11		0.3103	[0.22-0.4] mmHg decrease	Affymetrix [NR] (imputed)	N
782	chr6	25869370	25869371	rs548987	23824729	van Meurs JB	2013-07-03	Am J Clin Nutr	Common genetic loci influencing plasma homocysteine concentrations and their effect on risk of coronary artery disease.	Homocysteine levels	44,147 European ancestry individuals	NA	6p22.2	SLC17A3	rs548987-C	0.13	1E-8		0.0597	[0.04-0.079] unit increase	Affymetrix, Illumina [2090256] (imputed)	N
782	chr6	25870380	25870381	rs62394296	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	6p22.2	NR	rs62394296-T	0.11661299999999997	4E-10		0.01233	[0.0084-0.0163] unit increase	Affymetrix [16578495] (imputed)	N
782	chr6	25870541	25870542	rs1165205	18834626	Dehghan A	2008-10-01	Lancet	Association of three genetic loci with uric acid concentration and risk of gout: a genome-wide association study.	Urate levels	11,847 European ancestry individuals	11,024 European ancestry individuals, 3,843 African American individuals	6p22.2	SLC17A3	rs1165205-?	0.47	4E-29	(EA)	0.09	[0.07-0.11] unit decrease	Affymetrix, Illumina [up to 530683]	N
782	chr6	25870744	25870745	rs556339	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite modules (eigenmetabolites) in chronic kidney disease	1,221 cases	406 cases	6p22.2	SLC17A1, SLC17A3, SLC17A4	rs556339-T	0.25	2E-18	(adenosine 3, 5-cyclic monophosphate, biopterin)	0.008	[0.006-0.01] unit decrease	Illumina [7750367] (imputed)	N
782	chr6	25872578	25872579	rs972087	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium HDL	115,082 European ancestry individuals	NA	6p22.2		rs972087-A	0.877252	9E-9		0.0335355	[0.022-0.045] unit increase	NR [11722792] (imputed)	N
782	chr6	25872578	25872579	rs972087	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium HDL	115,082 European ancestry individuals	NA	6p22.2		rs972087-A	0.877252	5E-9		0.0344233	[0.023-0.046] unit increase	NR [11722792] (imputed)	N
782	chr6	25872578	25872579	rs972087	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium HDL particles	115,082 European ancestry individuals	NA	6p22.2		rs972087-A	0.877252	2E-8		0.0324251	[0.021-0.044] unit increase	NR [11722792] (imputed)	N
782	chr6	25873183	25873184	rs1408270	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	6p22.2	NR	rs1408270-G	0.26814400000000005	5E-16		0.00745843	[0.0056-0.0093] unit increase	Affymetrix [16582909] (imputed)	N
782	chr6	25873183	25873184	rs1408270	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	6p22.2	NR	rs1408270-G	0.26814400000000005	1E-21		0.00982479	[0.0078-0.0119] unit increase	Affymetrix [16582965] (imputed)	N
782	chr6	25873183	25873184	rs1408270	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Tenofovir clearance in HIV infection	243 European ancestry cases, 149 African American cases, 100 Hispanic American cases, 9 unknown ancestry cases	NA	6p22.2	SLC17A3	rs1408270-?		6E-7				Illumina [~ 5190000] (imputed)	N
782	chr6	25874422	25874423	rs13198474	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p22.2	NR	rs13198474-A	0.0745	2E-7	(EA)	0.0673	[0.042-0.092] unit decrease	Illumina [~ 11800000] (imputed)	N
782	chr6	25874422	25874423	rs13198474	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	6p22.2	NR	rs13198474-G	NR	3E-20		1.2195122	[NR]	Illumina [7158791] (imputed)	N
782	chr6	25878360	25878361	rs566530	32514006	Cho SK	2020-06-08	Sci Rep	Polygenic analysis of the effect of common and low-frequency genetic variants on serum uric acid levels in Korean individuals.	Serum uric acid levels	6,881 Korean ancestry individuals	3,914 Korean ancestry individuals	6p22.2	SLC17A3, SLC17A2	rs566530-T	0.1452	2E-9		0.1452	[0.098-0.193] unit decrease	Affymetrix, Illumina [6129701] (imputed)	N
782	chr6	25879538	25879539	rs487624	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	6p22.2	NR	rs487624-C	0.568302	1E-12		0.0193197	[0.014-0.025] unit increase	Affymetrix [16580851] (imputed)	N
782	chr6	25884147	25884148	rs473913	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	6p22.2	HIST1H2APS2, SLC17A3	rs473913-T	0.70984	2E-9		0.01614462	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
782	chr6	25884518	25884519	rs36014129	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls	NA	6p22.2	SLC17A4	rs36014129-?	NR	1E-24		1.5	[1.39-1.62]	Illumina [at least 5000000] (imputed)	N
782	chr6	25885813	25885814	rs629444	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	6p22.2	HIST1H2APS2	rs629444-C	NR	2E-13	(EA)	1.141	[1.11-1.18]	Illumina [6627481] (imputed)	N
782	chr6	25894608	25894609	rs13208859	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p22.2	HIST1H2APS2	rs13208859-A	NR	2E-8		0.0244112	[0.016-0.033] unit decrease	Affymetrix [319769] (imputed)	N
782	chr6	25894608	25894609	rs13208859	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p22.2	HIST1H2APS2	rs13208859-A	NR	2E-8		0.0243964	[0.016-0.033] unit decrease	Affymetrix [319769] (imputed)	N
782	chr6	25895574	25895575	rs6910741	24954895	Simino J	2014-06-19	Am J Hum Genet	Gene-age interactions in blood pressure regulation: a large-scale investigation with the CHARGE, Global BPgen, and ICBP Consortia.	Blood pressure	55,796 European ancestry individuals	43,445 European ancestry individuals, 1,849 Chinese ancestry individuals, 2,502 Malay ancestry individuals, 2,476 Asian Indian ancestry individuals, 1,855 Asian ancestry individuals	6p22.2	SLC17A2, SLC17A3	rs6910741-T		2E-6	(EA, MAP, Age 50-59)	0.61	[0.36-0.86] mmHg decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
782	chr6	25897168	25897169	rs736088	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	6p22.2	NR	rs736088-?	NR	5E-7	(AA)	67.2	[63.89-70.51]	Illumina [905956]	N
782	chr6	25897617	25897618	rs72830103	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Liver iron content	32,858 European ancestry individuals	NA	6p22.2	SLC17A3	rs72830103-?	NR	8E-31	(conditional)	0.149	NR mg/g increase	Affymetrix [9390170] (imputed)	N
782	chr6	25912341	25912342	rs9295674	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Large artery stroke	350 Indian ancestry cases, 2,154 Indian ancestry controls	NA	6p22.2		rs9295674-?	NR	3E-6		0.9573466	[0.939936588408045-0.975079106674813]	Illumina [up to 7827597] (imputed)	N
782	chr6	25914800	25914801	rs2071299	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p22.2	SLC17A2	rs2071299-A		2E-146		0.057	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
782	chr6	25916978	25916979	rs1865760	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	6p22.2	SLC17A2	rs1865760-T	0.69	2E-13		0.033	[0.019-0.047] unit decrease	Affymetrix, Illumina [2704730] (imputed)	N
782	chr6	25918224	25918225	rs80215559	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	6p22.2	NR	rs80215559-C	0.074267	1E-505		0.18368	[0.18-0.19] SD unit increase	Affymetrix, Illumina [50282193] (imputed)	N
782	chr6	25918224	25918225	rs80215559	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	6p22.2	SLC17A2	rs80215559-T	0.9398	3E-21		0.0565	[0.045-0.068] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
782	chr6	25918224	25918225	rs80215559	28334935	Raffield LM	2017-05-15	Hum Mol Genet	Genome-wide association study of iron traits and relation to diabetes in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL): potential genomic intersection of iron and glucose regulation?	Iron status biomarkers (total iron binding capacity)	12,586 Hispanic/Latino individuals	NA	6p22.2	SLC17A2	rs80215559-T	NR	7E-17		0.501	[0.38-0.62] unit increase	Illumina [27700000] (imputed)	N
782	chr6	25928375	25928376	rs9295676	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p22.2	NR	rs9295676-T	0.598	8E-11		1.105	[1.08-1.13]	Illumina [11270530] (imputed)	N
782	chr6	25931956	25931957	rs6940007	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.2	SLC17A2	rs6940007-C	NR	2E-12		0.0336382	[0.024-0.043] unit decrease	Affymetrix [323858] (imputed)	N
782	chr6	25931956	25931957	rs6940007	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.2	SLC17A2	rs6940007-C	NR	4E-13		0.0345806	[0.025-0.044] unit decrease	Affymetrix [127266] (imputed)	N
782	chr6	25931956	25931957	rs6940007	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6p22.2	SLC17A2	rs6940007-C	NR	5E-12		0.0325732	[0.023-0.042] unit decrease	Affymetrix [321114] (imputed)	N
782	chr6	25931956	25931957	rs6940007	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6p22.2	NR	rs6940007-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
782	chr6	25933931	25933932	rs11756659	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	6p22.2	SLC17A2	rs11756659-T	0.119148	6E-16		0.02959074	[0.022-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
782	chr6	25933931	25933932	rs11756659	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	6p22.2	SLC17A2	rs11756659-T	NR	2E-12		0.0403603	[0.028-0.053] unit decrease	Affymetrix [16832071] (imputed)	N
782	chr6	25933931	25933932	rs11756659	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	6p22.2	SLC17A2	rs11756659-T	0.1193	2E-9		0.03286494	[0.022-0.044] unit decrease	Affymetrix [~ 2500000] (imputed)	N
782	chr6	25933931	25933932	rs11756659	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	6p22.2	SLC17A2	rs11756659-T	0.1193	5E-11		0.03587942	[0.025-0.047] unit increase	Affymetrix [~ 2500000] (imputed)	N
782	chr6	25933931	25933932	rs11756659	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	6p22.2	SLC17A2	rs11756659-T	0.1192	1E-11		0.03721738	[0.026-0.048] unit increase	Affymetrix [~ 2500000] (imputed)	N
782	chr6	25934017	25934018	rs62394490	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	6p22.2	NR	rs62394490-T	0.405022	5E-18		0.00937404	[0.0071-0.0117] unit increase	Affymetrix [16582621] (imputed)	N
782	chr6	25934017	25934018	rs62394490	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	6p22.2	NR	rs62394490-T	0.405022	2E-20		0.0109005	[0.0084-0.0134] unit increase	Affymetrix [16582614] (imputed)	N
782	chr6	25936401	25936402	rs9461224	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	6p22.2	NR	rs9461224-T	0.39706600000000003	4E-10		0.0180325	[0.012-0.024] unit increase	Affymetrix [16577313] (imputed)	N
782	chr6	25938766	25938767	rs115648484	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	6p22.2	NR	rs115648484-A	0.0867888287589203	6E-14		0.012232474	[0.009-0.0154] unit decrease	NR [NR]	N
783	chr6	25957391	25957392	rs169219	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	6p22.2		rs169219-?	NR	5E-8				Affymetrix [NR] (imputed)	N
783	chr6	25961351	25961352	rs67491322	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA	6p22.2	NR	rs67491322-?	NR	3E-6		0.0613	[0.036-0.087] unit decrease	Illumina [at least 560000] (imputed)	N
783	chr6	25962043	25962044	rs6909762	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	6p22.2	NR	rs6909762-?	NR	2E-6	(AA)	57.27	[53.98-60.56]	Illumina [905956]	N
783	chr6	25962303	25962304	rs17587226	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Receptor for advanced glycosylation end products levels	21,758 European ancestry individuals	9,173 individuals	6p22.2		rs17587226-T	0.085	1E-9		0.0934	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
783	chr6	25976925	25976926	rs115913330	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p22.2	TRIM38	rs115913330-T	0.0366	7E-6		0.0885	[0.05-0.127] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
783	chr6	25979121	25979122	rs13203673	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p22.2	TRIM38	rs13203673-C	NR	9E-11		0.0309629	[0.022-0.04] unit decrease	Affymetrix [323858] (imputed)	N
783	chr6	25983009	25983010	rs13212534	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	6p22.2	NR	rs13212534-A	0.0889548674255731	5E-11		0.014668344	[0.01-0.019] unit decrease	NR [NR]	N
783	chr6	25997457	25997458	rs12216125	19084217	Benyamin B	2008-12-17	Am J Hum Genet	Variants in TF and HFE explain approximately 40% of genetic variation in serum-transferrin levels.	Iron status biomarkers	459 European ancestry twin pairs	NA	6p22.2	TRIM38	rs12216125-?	NR	4E-6	(transferrin saturation)			Illumina [315887]	N
783	chr6	26008486	26008487	rs9356996	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	6p22.2		rs9356996-A	NR	5E-12		0.0166	[0.012-0.021] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
783	chr6	26015488	26015489	rs13191445	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	6p22.2	NR	rs13191445-A	0.06	6E-12		1.23	[1.17-1.29]	Illumina [8468885] (imputed)	N
783	chr6	26015488	26015489	rs13191445	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in diabetes	70,762 European ancestry individuals, 20,967 African American individuals	NA	6p22.2	HIST1H1A	rs13191445-A	0.07	3E-8		0.933	[0.6-1.26] unit decrease	Affymetrix [NR] (imputed)	N
783	chr6	26015488	26015489	rs13191445	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in ever smokers	23,223 European ancestry cases,  16,964 European ancestry controls	NA	6p22.2	TRIM38, HIST1H1A	rs13191445-A	0.065749196	6E-8		1.1738136	[1.107597937-1.243987711]	Illumina [10439017] (imputed)	N
783	chr6	26015488	26015489	rs13191445	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	6p22.2	TRIM38, HIST1H1A	rs13191445-A	0.067737115	1E-9		1.1496384	[1.098926584-1.202690413]	Illumina [10439017] (imputed)	N
783	chr6	26016726	26016727	rs116399700	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	6p22.2	HIST1H1PS2	rs116399700-T	0.01996	1E-9		0.0964362	[0.082-0.111] unit decrease	Affymetrix [93095623] (imputed)	N
783	chr6	26017541	26017542	rs16891235	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	IgA levels	16,883 Icelandic ancestry individuals	2,151 Swedish ancestry individuals	6p22.2	HIST1H1A	rs16891235-C	0.0821	2E-6		0.09	NR SD units decrease	Illumina [21568490] (imputed)	N
783	chr6	26021871	26021872	rs41266779	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	6p22.2	HIST1H4A, HIST1H3A	rs41266779-T	NR	2E-10				Affymetrix, Illumina [NR] (imputed)	N
783	chr6	26021871	26021872	rs41266779	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	6p22.2	HIST1H4A, HIST1H3A	rs41266779-T	NR	1E-10	(EA)			Affymetrix, Illumina [NR] (imputed)	N
783	chr6	26021871	26021872	rs41266779	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	6p22.2	HIST1H4A, HIST1H3A	rs41266779-T	NR	8E-11	(EA)			Affymetrix, Illumina [NR] (imputed)	N
783	chr6	26021871	26021872	rs41266779	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	6p22.2	HIST1H4A, HIST1H3A	rs41266779-T	NR	6E-10				Affymetrix, Illumina [NR] (imputed)	N
783	chr6	26021871	26021872	rs41266779	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	6p22.2	HIST1H4A, HIST1H3A	rs41266779-T	NR	3E-6	(EA)	0.01	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
783	chr6	26022391	26022392	rs75397441	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.2	HIST1H4A	rs75397441-T	NR	3E-11		0.0326891	[0.023-0.042] unit decrease	Affymetrix [321016] (imputed)	N
783	chr6	26022391	26022392	rs75397441	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p22.2	HIST1H4A	rs75397441-T	NR	3E-10		0.0337117	[0.023-0.044] unit decrease	Affymetrix [323123] (imputed)	N
783	chr6	26031612	26031613	rs10484434	22174851	Lingappa JR	2011-12-12	PLoS One	Genomewide association study for determinants of HIV-1 acquisition and viral set point in HIV-1 serodiscordant couples with quantified virus exposure.	HIV-1 viral setpoint	496 African ancestry cases	NA		HIST1H3C, HIST1H4A	rs10484434-?	NR	1E-6				Illumina [990115]	N
783	chr6	26042238	26042239	rs7753826	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	6p22.2	SLC17A1-4, HFE	rs7753826-?	NR	4E-12				Affymetrix, Illumina [18800000] (imputed)	N
783	chr6	26042238	26042239	rs7753826	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	6p22.2	SLC17A1-4, HFE	rs7753826-?	NR	1E-15	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
783	chr6	26042238	26042239	rs7753826	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	6p22.2	SLC17A1-4, HFE	rs7753826-?	NR	7E-13				Affymetrix, Illumina [18800000] (imputed)	N
783	chr6	26042238	26042239	rs7753826	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	6p22.2	SLC17A1-4, HFE	rs7753826-?		4E-16	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
783	chr6	26042238	26042239	rs7753826	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	6p22.2	SLC17A1-4, HFE	rs7753826-?	NR	6E-24	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
783	chr6	26042238	26042239	rs7753826	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	6p22.2	SLC17A1-4, HFE	rs7753826-?	NR	3E-19				Affymetrix, Illumina [18800000] (imputed)	N
783	chr6	26042238	26042239	rs7753826	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	6p22.2	SLC17A1-4, HFE	rs7753826-?	NR	8E-20				Affymetrix, Illumina [18800000] (imputed)	N
783	chr6	26042238	26042239	rs7753826	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	6p22.2	SLC17A1-4, HFE	rs7753826-?	NR	2E-25	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
783	chr6	26044368	26044369	rs2032447	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	6p22.2	ENSG00000234816	rs2032447-A	NR	2E-8		0.017725412	[0.012-0.024] unit decrease	Affymetrix [NR]	N
783	chr6	26046564	26046565	rs7756117	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA		HIST1H2BB	rs7756117-A	0.692741	1E-10		0.016759388	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
783	chr6	26049923	26049924	rs9379820	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	6p22.2	NR	rs9379820-C	0.412252	5E-656		0.10592	[0.1-0.11] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
783	chr6	26054170	26054171	rs60512607	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	6p22.2	HIST1H1C	rs60512607-A	0.109	4E-7		0.0026	[0.0016-0.0036] unit decrease	Affymetrix [NR] (imputed)	N
783	chr6	26056398	26056399	rs61748580	32232851	Deguchi H	2020-03-30	Br J Haematol	Novel exomic rare variants associated with venous thrombosis.	Venous thromboembolism	104 European ancestry cases, 211 European ancestry controls	NA	6p22.2	HIST1H1C	rs61748580-?	0.0087	9E-6				Illumina [308166]	N
783	chr6	26059134	26059135	rs73736527	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Liver iron content	32,858 European ancestry individuals	NA	6p22.2	HIST1H1C	rs73736527-?	NR	2E-39	(conditional)	0.303	NR mg/g increase	Affymetrix [9390170] (imputed)	N
783	chr6	26060531	26060531	rs76455591	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	6p22.2	HIST1H1C	rs76455591-CA	0.143591	2E-13		0.023306675	[0.017-0.03] unit increase	Affymetrix [93095623] (imputed)	N
783	chr6	26067359	26067360	rs35050608	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Bipolar disorder (MTAG)	1,450,972 European ancestry individuals	NA			rs35050608-?	NR	3E-12				NR [2625067]	N
783	chr6	26072094	26072095	rs9968910	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	6p22.2		rs9968910-C	0.357912	9E-31		0.0985327	[0.094-0.103] unit increase	Affymetrix [93095623] (imputed)	N
783	chr6	26072991	26072992	rs144861591	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycoprotein acetyls levels	115,082 European ancestry individuals	NA	6p22.2		rs144861591-C	0.924475	2E-8		0.0437027	[0.028-0.059] unit increase	NR [11722792] (imputed)	N
783	chr6	26072991	26072992	rs144861591	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	6p22.2		rs144861591-T	NR	6E-727		0.2566	[0.25-0.27] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
783	chr6	26072991	26072992	rs144861591	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	6p22.2		rs144861591-T	NR	1E-1029		0.3043	[0.3-0.31] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
783	chr6	26072991	26072992	rs144861591	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	6p22.2		rs144861591-T	NR	9E-185		0.1254	[0.12-0.13] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
783	chr6	26072991	26072992	rs144861591	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Liver iron content	32,858 European ancestry individuals	NA	6p22.2	HFE	rs144861591-?	NR	4E-136	(conditional)	0.372	NR mg/g increase	Affymetrix [9390170] (imputed)	N
783	chr6	26072991	26072992	rs144861591	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	6p22.2		rs144861591-C	0.924	3E-640		1.1	[-1.14--1.06] % decrease	Affymetrix [NR] (imputed)	N
783	chr6	26072991	26072992	rs144861591	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	6p22.2	intergenic	rs144861591-T	0.0771	7E-216		0.2083623	[0.2-0.22] unit decrease	Affymetrix [~ 2500000] (imputed)	N
783	chr6	26072991	26072992	rs144861591	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	6p22.2	intergenic	rs144861591-T	0.077	1E-340		0.2611127	[0.25-0.27] unit increase	Affymetrix [~ 2500000] (imputed)	N
783	chr6	26072991	26072992	rs144861591	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	6p22.2	intergenic	rs144861591-T	0.077	1E-515		0.3222512	[0.31-0.34] unit increase	Affymetrix [~ 2500000] (imputed)	N
783	chr6	26072991	26072992	rs144861591	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	6p22.2	intergenic	rs144861591-T	0.0771	1E-162		0.1809882	[0.17-0.19] unit increase	Affymetrix [~ 2500000] (imputed)	N
783	chr6	26072991	26072992	rs144861591	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	6p22.2	intergenic	rs144861591-T	0.0771	7E-65		0.112755	[0.1-0.126] unit increase	Affymetrix [~ 2500000] (imputed)	N
783	chr6	26076446	26076447	rs34172963	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6p22.2		rs34172963-G	0.561489	7E-15		0.01883975	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
783	chr6	26079184	26079185	rs13216785	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	6p22.2	HFE	rs13216785-T	NR	8E-10		0.028427128	[0.019-0.037] unit increase	Affymetrix [NR]	N
783	chr6	26080749	26080750	rs2876694	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	6p22.2		rs2876694-T	0.413449	1E-31		0.030273246	[0.025-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
783	chr6	26082219	26082220	rs111663960	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	152,447 East Asian ancestry individuals	NA	6p22.2		rs111663960-G	0.021392	2E-9		0.0637537	[0.043-0.084] unit increase	Illumina [13478948] (imputed)	N
783	chr6	26082219	26082220	rs111663960	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	6p22.2	NR	rs111663960-A	0.875602	7E-392		0.120236	[0.11-0.13] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
783	chr6	26083134	26083135	rs4529296	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	6p22.2	NR	rs4529296-G	0.412735	7E-448		0.082368	[0.079-0.086] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
784	chr6	26084216	26084217	rs9295688	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	6p22.2	NR	rs9295688-A	0.412265	8E-367		0.076269	[0.073-0.08] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
784	chr6	26085806	26085807	rs1971508	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p22.2		rs1971508-A	0.456	1E-8				Affymetrix [10369434] (imputed)	N
784	chr6	26085806	26085807	rs1971508	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p22.2		rs1971508-A	0.456	5E-9				Affymetrix [10369434] (imputed)	N
784	chr6	26085806	26085807	rs1971508	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.2	HFE	rs1971508-A	NR	1E-9		0.0170743	[0.012-0.023] unit increase	Affymetrix [321016] (imputed)	N
784	chr6	26089339	26089340	rs56275179	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	6p22.2	HFE	rs56275179-G	NR	2E-15	(EA)	1.15	[1.12-1.18]	Illumina [6627481] (imputed)	N
784	chr6	26090024	26090025	rs61472021	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p22.2	HFE, HIST1H1A, HIST1H1C, HIST1H1D, HIST1H1E, HIST1H1T, HIST1H2AA, HIST1H2AB, HIST1H2AC, HIST1H2AD, HIST1H2AE, HIST1H2APS1, HIST1H2BA, HIST1H2BB, HIST1H2BC, HIST1H2BD, HIST1H2BE, HIST1H2BF, HIST1H2BG, HIST1H2BH, HIST1H2BI, HIST1H3A, HIST1H3B, HIST1H3C, HIST1H3D, HIST1H3E, HIST1H3F, HIST1H3G, HIST1H4A, HIST1H4B, HIST1H4C, HIST1H4D, HIST1H4E, HIST1H4F, HIST1H4G, HIST1H4H, SCGN, SLC17A1, SLC17A2, SLC17A3, SLC17A4, TRIM38	rs61472021-T		1E-13		1.12	[1.09-1.15]	Affymetrix, Illumina [NR]	N
784	chr6	26090269	26090270	rs34555420	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	6p22.2	HFE	rs34555420-G	0.901997	5E-12		0.0221737	[0.016-0.028] unit increase	Affymetrix [NR] (imputed)	N
784	chr6	26090269	26090270	rs34555420	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	6p22.2	HFE	rs34555420-G	0.901926	8E-15		0.0256667	[0.019-0.032] unit increase	Affymetrix [NR] (imputed)	N
784	chr6	26091178	26091179	rs1799945	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	6p22.2		rs1799945-G	NR	4E-14		0.0597	[0.044-0.075] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
784	chr6	26091178	26091179	rs1799945	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	135,482 East Asian ancestry individuals	NA	6p22.2		rs1799945-G	0.029518	6E-17		0.0889013	[0.068-0.11] unit increase	Illumina [13477028] (imputed)	N
784	chr6	26091178	26091179	rs1799945	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	33,307 East Asian ancestry individuals	NA	6p22.2	HFE	rs1799945-C	0.9636	3E-6		0.0348	[0.02-0.05] unit increase	Affymetrix, Illumina [15728197] (imputed)	N
784	chr6	26091178	26091179	rs1799945	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	6p22.2	HFE	rs1799945-C	0.8566	3E-47		0.0245	[0.021-0.028] unit increase	Affymetrix, Illumina [33811881] (imputed)	N
784	chr6	26091178	26091179	rs1799945	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	6p22.2	HFE	rs1799945-G	0.15043	6E-154		0.083119944	[0.077-0.089] unit increase	Affymetrix [93095623] (imputed)	N
784	chr6	26091178	26091179	rs1799945	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6p22.2	HFE	rs1799945-G	0.150433	3E-123		0.074769	[0.069-0.081] unit increase	Affymetrix [93095623] (imputed)	N
784	chr6	26091178	26091179	rs1799945	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	6p22.2	HFE	rs1799945-G	0.150488	7E-410		0.111249	[0.11-0.12] unit increase	Affymetrix [93095623] (imputed)	N
784	chr6	26091178	26091179	rs1799945	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	126,151 East Asian ancestry individuals	NA	6p22.2	NR	rs1799945-C	0.970155	6E-17		0.098141	[0.075-0.121] SD units decrease	Affymetrix, Illumina [16289083] (imputed)	N
784	chr6	26091178	26091179	rs1799945	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	119,629 East Asian ancestry individuals	NA	6p22.2	NR	rs1799945-C	0.970153	5E-29		0.134768	[0.11-0.16] SD units decrease	Affymetrix, Illumina [16286228] (imputed)	N
784	chr6	26091178	26091179	rs1799945	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p22.2	HFE	rs1799945-G		2E-224		0.099	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
784	chr6	26091178	26091179	rs1799945	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	6p22.2	HFE	rs1799945-G	0.152431	5E-15		0.06556424	[0.049-0.082] unit increase	Affymetrix [7288503] (imputed)	N
784	chr6	26091178	26091179	rs1799945	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure (cigarette smoking interaction)	80,552 European ancestry individuals, 27,118 African individuals, 13,438 Asian individuals, 8,805 Hispanic individuals	305,513 European ancestry individuals, 7,786 African individuals, 148,932 Asian individuals, 13,533 Hispanic individuals, 4,414 Brazilian individuals	6p22.2	HFE	rs1799945-?	NR	7E-19				Affymetrix, Illumina [18800000] (imputed)	N
784	chr6	26091178	26091179	rs1799945	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure (cigarette smoking interaction)	80,552 European ancestry individuals, 27,118 African individuals, 13,438 Asian individuals, 8,805 Hispanic individuals	305,513 European ancestry individuals, 7,786 African individuals, 148,932 Asian individuals, 13,533 Hispanic individuals, 4,414 Brazilian individuals	6p22.2	HFE	rs1799945-?		4E-33				Affymetrix, Illumina [18800000] (imputed)	N
784	chr6	26091178	26091179	rs1799945	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin concentration	108,728 Japanese ancestry individuals	NA	6p22.2	HFE	rs1799945-?	NR	4E-15		0.0983	[0.074-0.123] unit increase novel	Illumina [6108953] (imputed)	N
784	chr6	26091178	26091179	rs1799945	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin	108,054 Japanese ancestry individuals	NA	6p22.2	HFE	rs1799945-?	NR	1E-20		0.1166	[0.092-0.141] unit increase novel	Illumina [6108953] (imputed)	N
784	chr6	26091178	26091179	rs1799945	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	6p22.2	HFE	rs1799945-G	0.15	2E-143		0.137913	[0.13-0.15] unit decrease	Affymetrix [16832071] (imputed)	N
784	chr6	26091178	26091179	rs1799945	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Systolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	6p22.2	HFE	rs1799945-G	0.144	8E-10	(EA, initial)	0.627	[0.43-0.83] unit increase	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
784	chr6	26091178	26091179	rs1799945	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Diastolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	6p22.2	HFE	rs1799945-G	0.144	9E-14	(EA, initial)	0.465	[0.34-0.59] unit increase	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
784	chr6	26091178	26091179	rs1799945	28334935	Raffield LM	2017-05-15	Hum Mol Genet	Genome-wide association study of iron traits and relation to diabetes in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL): potential genomic intersection of iron and glucose regulation?	Iron status biomarkers (transferrin saturation)	12,589 Hispanic/Latino individuals	NA	6p22.2	HFE	rs1799945-C	NR	2E-38		0.274	[0.23-0.32] unit decrease	Illumina [27700000] (imputed)	N
784	chr6	26091178	26091179	rs1799945	28334935	Raffield LM	2017-05-15	Hum Mol Genet	Genome-wide association study of iron traits and relation to diabetes in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL): potential genomic intersection of iron and glucose regulation?	Iron status biomarkers (iron levels)	12,580 Hispanic/Latino individuals	NA	6p22.2	HFE	rs1799945-C	NR	4E-26		0.365	unit decrease	Illumina [27700000] (imputed)	N
784	chr6	26091178	26091179	rs1799945	28334935	Raffield LM	2017-05-15	Hum Mol Genet	Genome-wide association study of iron traits and relation to diabetes in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL): potential genomic intersection of iron and glucose regulation?	Iron status biomarkers (ferritin levels)	12,375 Hispanic/Latino individuals	NA	6p22.2	HFE	rs1799945-C	NR	1E-9		0.043	[0.029-0.057] unit decrease	Illumina [27700000] (imputed)	N
784	chr6	26091178	26091179	rs1799945	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	6p22.2	HFE	rs1799945-G	0.1504	3E-40		0.06648829	[0.057-0.076] unit increase	Affymetrix [~ 2500000] (imputed)	N
784	chr6	26091178	26091179	rs1799945	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	6p22.2	HFE	rs1799945-G	0.1504	2E-30		0.0573814	[0.048-0.067] unit increase	Affymetrix [~ 2500000] (imputed)	N
784	chr6	26091178	26091179	rs1799945	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	6p22.2	HFE	rs1799945-G	0.1503	5E-12		0.03507084	[0.025-0.045] unit decrease	Affymetrix [~ 2500000] (imputed)	N
784	chr6	26091178	26091179	rs1799945	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin concentration	172,851 European ancestry individuals	NA	6p22.2	HFE	rs1799945-G	0.1505	1E-135		0.1196674	[0.11-0.13] unit increase	Affymetrix [~ 2500000] (imputed)	N
784	chr6	26091178	26091179	rs1799945	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	6p22.2	HFE	rs1799945-G	0.1505	2E-103		0.1067434	[0.097-0.116] unit increase	Affymetrix [~ 2500000] (imputed)	N
784	chr6	26091178	26091179	rs1799945	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	6p22.2	HFE	rs1799945-G	0.1505	1E-41		0.06645191	[0.057-0.076] unit increase	Affymetrix [~ 2500000] (imputed)	N
784	chr6	26091178	26091179	rs1799945	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	6p22.2	HFE	rs1799945-C		4E-11		0.359	unit decrease	Affymetrix [at least 2696785] (imputed)	N
784	chr6	26091178	26091179	rs1799945	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	6p22.2	HFE	rs1799945-C		5E-6	(EA)	0.248	unit decrease	Affymetrix [at least 2696785] (imputed)	N
784	chr6	26091178	26091179	rs1799945	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	6p22.2	HFE	rs1799945-C		1E-18		0.292	unit decrease	Affymetrix [at least 2696785] (imputed)	N
784	chr6	26091178	26091179	rs1799945	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Systolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	6p22.2	HFE	rs1799945-C	0.857	3E-12		0.598	[0.43-0.77] mm Hg decrease	Affymetrix, Illumina, Perlegen [128272]	N
784	chr6	26091178	26091179	rs1799945	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Diastolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	6p22.2	HFE	rs1799945-C	0.857	3E-16		0.43	[0.33-0.53] mm Hg decrease	Affymetrix, Illumina, Perlegen [128272]	N
784	chr6	26091178	26091179	rs1799945	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Mean arterial pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	NA	6p22.2	HFE, SLC17A3, HIST1H1T, HIST1H2BC	rs1799945-G	0.130726291174492	1E-17		0.57716066	[0.45-0.71] unit increase	Illumina [247039]	N
784	chr6	26091178	26091179	rs1799945	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Diastolic blood pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	6p22.2	HFE	rs1799945-C	0.8724	1E-9		0.0319	unit decrease	Illumina [242296]	N
784	chr6	26091178	26091179	rs1799945	21909115	Ehret GB	2011-09-11	Nature	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Systolic blood pressure	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	6p22.2	HFE	rs1799945-G	0.14	8E-12		0.627	[NR] mmHg increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
784	chr6	26091178	26091179	rs1799945	21909115	Ehret GB	2011-09-11	Nature	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Hypertension	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	6p22.2	HFE	rs1799945-G	0.14	2E-10		0.095	[NR] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
784	chr6	26091178	26091179	rs1799945	21909115	Ehret GB	2011-09-11	Nature	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Diastolic blood pressure	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	6p22.2	HFE	rs1799945-G	0.14	2E-15		0.457	[NR] mmHg increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
784	chr6	26091178	26091179	rs1799945	21208937	Pichler I	2011-01-04	Hum Mol Genet	Identification of a common variant in the TFR2 gene implicated in the physiological regulation of serum iron levels.	Iron status biomarkers	Up to 5,633 European ancestry individuals	Up to 3,457 European ancestry individuals	6p22.2	HFE	rs1799945-C	0.83	3E-9	(iron)	4.95	[3.30-6.60] ug/dl decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
784	chr6	26091184	26091185	rs1800730	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	6p22.2	HFE	rs1800730-T	0.016319	2E-31		0.0497425	[0.034-0.066] unit increase	Affymetrix [93095623] (imputed)	N
784	chr6	26091184	26091185	rs1800730	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	6p22.2	HFE	rs1800730-T	0.016302	3E-23		0.0521104	[0.035-0.069] unit increase	Affymetrix [93095623] (imputed)	N
784	chr6	26091184	26091185	rs1800730	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	6p22.2	HFE	rs1800730-T	0.016311	8E-69		0.15213649	[0.14-0.17] unit increase	Affymetrix [93095623] (imputed)	N
784	chr6	26091335	26091336	rs2071303	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	6p22.2		rs2071303-C	NR	3E-12		0.0142	[0.01-0.018] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
784	chr6	26091335	26091336	rs2071303	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	6p22.2	HFE	rs2071303-T	0.656	2E-8		0.013890003	[0.009-0.0188] unit increase	Affymetrix [11515109] (imputed)	N
784	chr6	26091335	26091336	rs2071303	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	6p22.2	NR	rs2071303-C	0.349302483751096	2E-14		0.011804833	[0.0088-0.0148] unit decrease	NR [NR]	N
784	chr6	26091335	26091336	rs2071303	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	6p22.2	NR	rs2071303-C	0.349302483751096	3E-12		0.009582902	[0.0069-0.0123] unit decrease	NR [NR]	N
784	chr6	26091335	26091336	rs2071303	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	6p22.2	NR	rs2071303-C	0.349302483751096	3E-14		0.0075601023	[0.0056-0.0095] unit decrease	NR [NR]	N
784	chr6	26091335	26091336	rs2071303	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	6p22.2	Intergenic	rs2071303-T	0.6579	3E-11	(MTAG)	0.016	[0.011-0.021] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
784	chr6	26091335	26091336	rs2071303	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	6p22.2	Intergenic	rs2071303-T	0.6579	1E-8		0.0172	[0.011-0.023] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
784	chr6	26091335	26091336	rs2071303	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	6p22.2	NR	rs2071303-T	NR	5E-9		5.835	z score increase	Affymetrix [10847151] (imputed)	N
784	chr6	26091335	26091336	rs2071303	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	6p22.2	HFE	rs2071303-T	NR	5E-8		0.016708005	[0.011-0.023] unit decrease	Affymetrix [NR]	N
784	chr6	26092169	26092170	rs2032451	34951656	Downie CG	2021-12-24	Diabetologia	Multi-ethnic GWAS and fine-mapping of glycaemic traits identify novel loci in the PAGE Study.	Glycated haemoglobin HbA1c levels adjusted for BMI	23,357 European ancestry, African American or Afro-Caribbean, Hispanic or Latin American, Asian ancestry individuals	NA	6p22.2		rs2032451-T	0.1307	7E-10		0.0922	[0.063-0.122] unit decrease	Affymetrix, Illumina [23060038] (imputed)	N
784	chr6	26092169	26092170	rs2032451	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	6p22.2		rs2032451-T	NR	2E-15		0.024	[0.018-0.03] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
784	chr6	26092169	26092170	rs2032451	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red cell distribution width	9,611 European ancestry individuals	NA	6p22.2		rs2032451-?	0.8476	2E-7		0.1544	[0.096-0.213] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
784	chr6	26092169	26092170	rs2032451	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red cell distribution width	6,141 African American individuals, 17,272 Hispanic or Latin American individuals, 9,611 European ancestry individuals, 123 Asian ancestry individuals, 20 Native American ancestry individuals, 382 individuals	NA	6p22.2		rs2032451-?	0.8697	3E-25		0.1245	[0.1-0.15] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
784	chr6	26092169	26092170	rs2032451	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red cell distribution width	17,272 Hispanic or Latin American individuals	NA	6p22.2		rs2032451-?	0.8817	1E-11		0.1119	[0.08-0.144] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
784	chr6	26092169	26092170	rs2032451	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red blood cell traits (multivariate analysis)	29,513 European ancestry individuals	NA	6p22.2	NR	rs2032451-?	0.85	1E-11				Affymetrix, Illumina [21000000] (imputed)	N
784	chr6	26092169	26092170	rs2032451	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular volume	8,556 African American individuals, 17,141 Hispanic or Latin American individuals, 14,483 European ancestry individuals, 125 Asian ancestry individuals, 594 Native American ancestry individuals, 377 individuals	NA	6p22.2		rs2032451-?	0.8697	2E-27		0.6189	[0.51-0.73] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
784	chr6	26092169	26092170	rs2032451	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular volume	17,141 Hispanic or Latin American individuals	NA	6p22.2		rs2032451-?	0.8817	5E-10		0.6137	[0.42-0.81] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
784	chr6	26092169	26092170	rs2032451	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular volume	14,483 European ancestry individuals	NA	6p22.2		rs2032451-?	0.8476	4E-19		0.6301	[0.49-0.77] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
784	chr6	26092169	26092170	rs2032451	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin concentration	29,587 European ancestry individuals	NA	6p22.2		rs2032451-?	0.8476	4E-14		0.0798	[0.059-0.101] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
784	chr6	26092169	26092170	rs2032451	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin concentration	20,877 Hispanic or Latin American individuals	NA	6p22.2		rs2032451-?	0.8817	2E-11		0.1154	[0.082-0.149] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
784	chr6	26092169	26092170	rs2032451	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin concentration	16,353 African American individuals, 20,877 Hispanic or Latin American individuals, 29,587 European ancestry individuals, 635 Asian ancestry individuals, 20 Native American ancestry individuals, 384 individuals	NA	6p22.2		rs2032451-?	0.8697	2E-22		0.0863	[0.069-0.104] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
784	chr6	26092169	26092170	rs2032451	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin	8,694 African American individuals, 17,400 Hispanic or Latin American individuals, 14,693 European ancestry individuals, 127 Asian ancestry individuals, 20 Native American ancestry individuals, 382 individuals	NA	6p22.2		rs2032451-?	0.8697	8E-38		0.2825	[0.24-0.33] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
784	chr6	26092169	26092170	rs2032451	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin	17,400 Hispanic or Latin American individuals	NA	6p22.2		rs2032451-?	0.8817	8E-17		0.3049	[0.23-0.38] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
784	chr6	26092169	26092170	rs2032451	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin	14,693 European ancestry individuals	NA	6p22.2		rs2032451-?	0.8476	1E-24		0.2824	[0.23-0.34] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
784	chr6	26092169	26092170	rs2032451	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Hemoglobin concentration	29,379 European ancestry individuals	NA	6p22.2		rs2032451-?	0.8476	1E-19		0.1002	[0.079-0.122] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
784	chr6	26092169	26092170	rs2032451	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Hemoglobin concentration	20,692 Hispanic or Latin American individuals	NA	6p22.2		rs2032451-?	0.8817	3E-12		0.1217	[0.087-0.156] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
784	chr6	26092169	26092170	rs2032451	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Hemoglobin concentration	16,186 African American individuals, 20,692 Hispanic or Latin American individuals, 29,379 European ancestry individuals, 630 Asian ancestry individuals, 601 Native American ancestry individuals, 381 individuals	NA	6p22.2		rs2032451-?	0.8697	1E-30		0.1056	[0.088-0.124] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
784	chr6	26092169	26092170	rs2032451	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Hematocrit	29,383 European ancestry individuals	NA	6p22.2		rs2032451-?	0.8476	7E-11		0.2134	[0.15-0.28] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
784	chr6	26092169	26092170	rs2032451	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Hematocrit	20,704 Hispanic or Latin American individuals	NA	6p22.2		rs2032451-?	0.8817	4E-6		0.2331	[0.13-0.33] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
784	chr6	26092169	26092170	rs2032451	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Hematocrit	16,184 African American individuals, 20,704 Hispanic or Latin American individuals, 29,383 European ancestry individuals, 631 Asian ancestry individuals, 601 Native American ancestry individuals, 381 individuals	NA	6p22.2		rs2032451-?	0.8697	4E-16		0.2195	[0.17-0.27] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
784	chr6	26092169	26092170	rs2032451	31869403	Kowalski MH	2019-12-23	PLoS Genet	Use of >100,000 NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium whole genome sequences improves imputation quality and detection of rare variant associations in admixed African and Hispanic/Latino populations.	Hemoglobin levels	14,739 African American individuals, 6,762 African ancestry individuals, 21,686 Hispanic/Latino individuals	7,037 African American individuals	6p22.2	NR	rs2032451-T	NR	2E-11	(Hispanic/Latino)	0.102	NR unit increase	Affymetrix, Illumina [up to 35800000] (imputed)	N
784	chr6	26092169	26092170	rs2032451	28453575	Hodonsky CJ	2017-04-28	PLoS Genet	Genome-wide association study of red blood cell traits in Hispanics/Latinos: The Hispanic Community Health Study/Study of Latinos.	Mean corpuscular hemoglobin	12,502 Hispanic/Latino individuals	4,772 Hispanic/Latino individuals	6p22.2	HFE	rs2032451-G	0.88	4E-12		0.29	[0.21-0.37] pg decrease	Illumina [27801688] (imputed)	N
784	chr6	26092169	26092170	rs2032451	28453575	Hodonsky CJ	2017-04-28	PLoS Genet	Genome-wide association study of red blood cell traits in Hispanics/Latinos: The Hispanic Community Health Study/Study of Latinos.	Hemoglobin	12,502 Hispanic/Latino individuals	7,106 Hispanic/Latino individuals	6p22.2	HFE	rs2032451-G	0.88	3E-8		0.12	[0.086-0.164] g/dL decrease	Illumina [27801688] (imputed)	N
784	chr6	26093140	26093141	rs1800562	35079123	Chambers T	2022-01-25	Mol Psychiatry	Genetic common variants associated with cerebellar volume and their overlap with mental disorders: a study on 33,265 individuals from the UK-Biobank.	Total cerebellar volume (excluding Crus I vermis)	33,265 European ancestry individuals	NA	6p22.2		rs1800562-A	NR	7E-12		0.0377	[0.027-0.048] unit decrease	Affymetrix [6193476] (imputed)	N
784	chr6	26093140	26093141	rs1800562	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	6p22.2		rs1800562-A	NR	5E-49		0.0628	[0.054-0.071] unit increase	Affymetrix, Illumina [20535842] (imputed)	N
784	chr6	26093140	26093141	rs1800562	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	6p22.2		rs1800562-A	NR	3E-362		0.1428	[0.14-0.15] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
784	chr6	26093140	26093141	rs1800562	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	6p22.2		rs1800562-A	NR	1E-168		0.1	[0.093-0.107] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
784	chr6	26093140	26093141	rs1800562	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Aspartate aminotransferase levels	386,570 British ancestry individuals, 10,617 Asian or Asian British individuals, 7,426 Black or Black British individuals, 2,321 Chinese ancestry individuals	NA	6p22.2	HFE	rs1800562-?	NR	7E-11		0.0043	[0.0033-0.0053] unit increase	Affymetrix [21347608] (imputed)	N
784	chr6	26093140	26093141	rs1800562	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Alanine aminotransferase levels	387,859 British ancestry individuals, 10,635 Asian or Asian British individuals, 7,468 Black or Black British individuals, 2,338 Chinese ancestry individuals	NA	6p22.2	HFE	rs1800562-?	NR	3E-9		0.0055	[0.0039-0.0071] unit increase	Affymetrix [21347608] (imputed)	N
784	chr6	26093140	26093141	rs1800562	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Red cell distribution width	10,184 White ancestry individuals, 44 Asian ancestry individuals, 6,776 Black individuals, 11,978 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	6p22.2		rs1800562-A	NR	6E-15		0.25	[0.19-0.31] unit decrease	Illumina [76131582]	N
784	chr6	26093140	26093141	rs1800562	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular volume	22,267 Amish, White ancestry individuals, 447 Asian ancestry individuals, 12,285 Black individuals, 13,831 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	6p22.2		rs1800562-A	NR	2E-32		1.1	[0.92-1.28] unit increase	Illumina [97506867]	N
784	chr6	26093140	26093141	rs1800562	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular hemoglobin concentration	25,256 Amish, White ancestry individuals, 447 Asian ancestry individuals, 13,112 Black individuals, 13,833 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	6p22.2		rs1800562-A	NR	1E-16		0.14	[0.1-0.18] unit increase	Illumina [101200590]	N
784	chr6	26093140	26093141	rs1800562	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular hemoglobin	20,714 Amish, White ancestry individuals, 447 Asian ancestry individuals, 11,246 Black individuals, 13,834 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	6p22.2		rs1800562-A	NR	3E-53		0.58	[0.5-0.66] unit increase	Illumina [94681438]	N
784	chr6	26093140	26093141	rs1800562	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Hemoglobin	33,325 Amish, White ancestry individuals, 653 Asian ancestry individuals, 14,454 Black individuals, 14,029 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	6p22.2		rs1800562-A	NR	2E-30		0.2	[0.16-0.24] unit increase	Illumina [110351653]	N
784	chr6	26093140	26093141	rs1800562	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Hematocrit	33,324 Amish, White ancestry individuals, 654 Asian ancestry individuals, 14,474 Black individuals, 14,035 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	6p22.2		rs1800562-A	NR	6E-17		0.42	[0.32-0.52] unit increase	Illumina [110396782]	N
784	chr6	26093140	26093141	rs1800562	33536631	Bell S	2021-02-03	Commun Biol	A genome-wide meta-analysis yields 46 new loci associating with biomarkers of iron homeostasis.	Iron status biomarkers (transferrin saturation)	131,471 European ancestry individuals	NA	6p22.2	HFE	rs1800562-A	0.0677	1E-300		0.45	[0.42-0.47] SD increase	Affymetrix, Illumina [40000000] (imputed)	N
784	chr6	26093140	26093141	rs1800562	33536631	Bell S	2021-02-03	Commun Biol	A genome-wide meta-analysis yields 46 new loci associating with biomarkers of iron homeostasis.	Iron status biomarkers (total iron binding capacity)	135,430 European ancestry individuals	NA	6p22.2	HFE	rs1800562-A	0.0677	1E-300		0.45	[0.47-0.43] SD decrease	Affymetrix, Illumina [40000000] (imputed)	N
784	chr6	26093140	26093141	rs1800562	33536631	Bell S	2021-02-03	Commun Biol	A genome-wide meta-analysis yields 46 new loci associating with biomarkers of iron homeostasis.	Iron status biomarkers (iron levels)	163,511 European ancestry individuals	NA	6p22.2	HFE	rs1800562-A	0.0677	4E-276		0.27	[0.26-0.29] SD increase	Affymetrix, Illumina [40000000] (imputed)	N
784	chr6	26093140	26093141	rs1800562	33536631	Bell S	2021-02-03	Commun Biol	A genome-wide meta-analysis yields 46 new loci associating with biomarkers of iron homeostasis.	Iron status biomarkers (ferritin levels)	246,139 European ancestry individuals	NA	6p22.2	HFE	rs1800562-A	0.0677	2E-84		0.13	[0.12-0.15] SD increase	Affymetrix, Illumina [40000000] (imputed)	N
784	chr6	26093140	26093141	rs1800562	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	6p22.2	HFE	rs1800562-A	0.077057	2E-172		0.119810864	[0.11-0.13] unit increase	Affymetrix [93095623] (imputed)	N
784	chr6	26093140	26093141	rs1800562	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6p22.2	HFE	rs1800562-A	0.077059	2E-154		0.114374325	[0.11-0.12] unit increase	Affymetrix [93095623] (imputed)	N
784	chr6	26093140	26093141	rs1800562	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	6p22.2	HFE	rs1800562-A	0.076912	3E-659		0.23842824	[0.23-0.25] unit decrease	Affymetrix [93095623] (imputed)	N
784	chr6	26093140	26093141	rs1800562	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	6p22.2	HFE	rs1800562-A	0.07694	1E-28		0.047638047	[0.039-0.056] unit decrease	Affymetrix [93095623] (imputed)	N
784	chr6	26093140	26093141	rs1800562	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	6p22.2	HFE	rs1800562-A	0.076614	3E-9		0.026697533	[0.018-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
784	chr6	26093140	26093141	rs1800562	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6p22.2	HFE	rs1800562-A	0.07707	2E-320		0.16774651	[0.16-0.18] unit increase	Affymetrix [93095623] (imputed)	N
784	chr6	26093140	26093141	rs1800562	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	6p22.2	HFE	rs1800562-A	0.076914	5E-1242		0.281596	[0.27-0.29] unit increase	Affymetrix [93095623] (imputed)	N
784	chr6	26093140	26093141	rs1800562	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	6p22.2	HFE	rs1800562-A	0.076917	5E-514		0.187759	[0.18-0.2] unit increase	Affymetrix [93095623] (imputed)	N
784	chr6	26093140	26093141	rs1800562	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	6p22.2	HFE	rs1800562-A	0.076932	1E-1685		0.3940408	[0.39-0.4] unit increase	Affymetrix [93095623] (imputed)	N
784	chr6	26093140	26093141	rs1800562	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	6p22.2	HFE	rs1800562-A	0.0769220000000001	1E-526		0.20528811	[0.2-0.21] unit increase	Affymetrix [93095623] (imputed)	N
784	chr6	26093140	26093141	rs1800562	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	6p22.2	HFE	rs1800562-A	0.076935	2E-190		0.1275169	[0.12-0.14] unit increase	Affymetrix [93095623] (imputed)	N
784	chr6	26093140	26093141	rs1800562	32247823	Parisinos CA	2020-04-02	J Hepatol	Genome-wide and Mendelian randomisation studies of liver MRI yield insights into the pathogenesis of steatohepatitis.	Liver fibrosis and steatohepatitis severity (MRI cT1 measure)	14,440 European ancestry individuals	NA	6p22.2	HFE	rs1800562-A	0.925	8E-7		0.111	[0.067-0.155] unit decrease	Affymetrix [~ 12000000] (imputed)	N
784	chr6	26093140	26093141	rs1800562	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red cell distribution width	9,611 European ancestry individuals	NA	6p22.2		rs1800562-?	0.9385	2E-6		0.2114	[0.12-0.3] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
784	chr6	26093140	26093141	rs1800562	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red cell distribution width	6,141 African American individuals, 17,272 Hispanic or Latin American individuals, 9,611 European ancestry individuals, 123 Asian ancestry individuals, 20 Native American ancestry individuals, 382 individuals	NA	6p22.2		rs1800562-?	0.947	1E-14		0.1666	[0.12-0.21] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
784	chr6	26093140	26093141	rs1800562	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red blood cell traits (multivariate analysis)	29,513 European ancestry individuals	NA	6p22.2	NR	rs1800562-?	0.93	1E-11				Affymetrix, Illumina [21000000] (imputed)	N
784	chr6	26093140	26093141	rs1800562	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red blood cell traits (multivariate analysis)	20,697 Hispanic or Latin American individuals	NA	6p22.2	NR	rs1800562-?	0.98	1E-10				Affymetrix, Illumina [21000000] (imputed)	N
784	chr6	26093140	26093141	rs1800562	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular volume	8,556 African American individuals, 17,141 Hispanic or Latin American individuals, 14,483 European ancestry individuals, 125 Asian ancestry individuals, 594 Native American ancestry individuals, 377 individuals	NA	6p22.2		rs1800562-?	0.947	2E-22		0.9309	[0.74-1.12] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
784	chr6	26093140	26093141	rs1800562	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular volume	14,483 European ancestry individuals	NA	6p22.2		rs1800562-?	0.9385	1E-20		0.9763	[0.77-1.18] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
784	chr6	26093140	26093141	rs1800562	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin concentration	29,587 European ancestry individuals	NA	6p22.2		rs1800562-?	0.9385	4E-15		0.1247	[0.094-0.156] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
784	chr6	26093140	26093141	rs1800562	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin concentration	16,353 African American individuals, 20,877 Hispanic or Latin American individuals, 29,587 European ancestry individuals, 635 Asian ancestry individuals, 20 Native American ancestry individuals, 384 individuals	NA	6p22.2		rs1800562-?	0.947	1E-16		0.1196	[0.091-0.148] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
784	chr6	26093140	26093141	rs1800562	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin	8,694 African American individuals, 17,400 Hispanic or Latin American individuals, 14,693 European ancestry individuals, 127 Asian ancestry individuals, 20 Native American ancestry individuals, 382 individuals	NA	6p22.2		rs1800562-?	0.947	1E-34		0.4537	[0.38-0.53] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
784	chr6	26093140	26093141	rs1800562	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin	14,693 European ancestry individuals	NA	6p22.2		rs1800562-?	0.9385	2E-32		0.4866	[0.41-0.57] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
784	chr6	26093140	26093141	rs1800562	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Hemoglobin concentration	29,379 European ancestry individuals	NA	6p22.2		rs1800562-?	0.9385	1E-24		0.1697	[0.14-0.2] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
784	chr6	26093140	26093141	rs1800562	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Hemoglobin concentration	16,186 African American individuals, 20,692 Hispanic or Latin American individuals, 29,379 European ancestry individuals, 630 Asian ancestry individuals, 601 Native American ancestry individuals, 381 individuals	NA	6p22.2		rs1800562-?	0.947	4E-29		0.1679	[0.14-0.2] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
784	chr6	26093140	26093141	rs1800562	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Hemoglobin concentration	16,186 African American individuals	NA	6p22.2		rs1800562-?	0.9853	9E-6		0.2436	[0.14-0.35] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
784	chr6	26093140	26093141	rs1800562	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Hematocrit	29,383 European ancestry individuals	NA	6p22.2		rs1800562-?	0.9385	7E-15		0.3819	[0.29-0.48] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
784	chr6	26093140	26093141	rs1800562	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Hematocrit	16,184 African American individuals, 20,704 Hispanic or Latin American individuals, 29,383 European ancestry individuals, 631 Asian ancestry individuals, 601 Native American ancestry individuals, 381 individuals	NA	6p22.2		rs1800562-?	0.947	1E-17		0.3803	[0.29-0.47] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
784	chr6	26093140	26093141	rs1800562	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	6p22.2	HFE	rs1800562-?	NR	5E-44		0.0662	[0.058-0.075] unit decrease	Affymetrix [5701386] (imputed)	N
784	chr6	26093140	26093141	rs1800562	30374069	Styrkarsdottir U	2018-10-29	Nat Genet	Meta-analysis of Icelandic and UK data sets identifies missense variants in SMO, IL11, COL11A1 and 13 more new loci associated with osteoarthritis.	Osteoarthritis (hip)	17,151 European ancestry cases, 596,639 European ancestry controls	NA	6p22.2	HFE	rs1800562-G	NR	5E-14	(recessive)	1.95	[1.64-2.32]	Affymetrix, Illumina [11554240] (imputed)	N
784	chr6	26093140	26093141	rs1800562	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p22.2	NR	rs1800562-G	NR	9E-19		0.083	unit increase	Affymetrix [at least 7091467] (imputed)	N
784	chr6	26093140	26093141	rs1800562	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p22.2	NR	rs1800562-G	0.939	9E-20	(EA)	0.088	unit increase	Affymetrix [at least 7091467] (imputed)	N
784	chr6	26093140	26093141	rs1800562	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p22.2	NR	rs1800562-G	NR	3E-23		0.095	unit increase	Affymetrix [at least 7091467] (imputed)	N
784	chr6	26093140	26093141	rs1800562	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p22.2	NR	rs1800562-G	0.939	2E-23	(EA)	0.099	unit increase	Affymetrix [at least 7091467] (imputed)	N
784	chr6	26093140	26093141	rs1800562	28898252	Wheeler E	2017-09-12	PLoS Med	Impact of common genetic determinants of Hemoglobin A1c on type 2 diabetes risk and diagnosis in ancestrally diverse populations: A transethnic genome-wide meta-analysis.	Glycated hemoglobin levels	88,355 European ancestry individuals	NA	6p22.2	HFE	rs1800562-G	0.9279	5E-28		0.0398	[0.033-0.047] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
784	chr6	26093140	26093141	rs1800562	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Diastolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	6p22.2	intergenic	rs1800562-A	0.059	9E-17		0.394	[0.3-0.49] unit increase	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
784	chr6	26093140	26093141	rs1800562	28334935	Raffield LM	2017-05-15	Hum Mol Genet	Genome-wide association study of iron traits and relation to diabetes in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL): potential genomic intersection of iron and glucose regulation?	Iron status biomarkers (total iron binding capacity)	12,586 Hispanic/Latino individuals	NA	6p22.2	HFE	rs1800562-G	NR	4E-18		0.522	unit increase	Illumina [27700000] (imputed)	N
784	chr6	26093140	26093141	rs1800562	28334935	Raffield LM	2017-05-15	Hum Mol Genet	Genome-wide association study of iron traits and relation to diabetes in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL): potential genomic intersection of iron and glucose regulation?	Iron status biomarkers (total iron binding capacity)	12,586 Hispanic/Latino individuals	NA	6p22.2	HFE	rs1800562-G	NR	4E-18		0.522	[0.4-0.64] unit increase	Illumina [27700000] (imputed)	N
784	chr6	26093140	26093141	rs1800562	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	6p22.2	HFE	rs1800562-A	0.0841	5E-15		0.04991289	[0.037-0.062] unit decrease	Affymetrix [~ 2500000] (imputed)	N
784	chr6	26093140	26093141	rs1800562	27846281	Galesloot TE	2016-11-15	PLoS One	Meta-GWAS and Meta-Analysis of Exome Array Studies Do Not Reveal Genetic Determinants of Serum Hepcidin.	Hepcidin/ferritin ratio	1495 European ancestry individuals without iron deficiency or clinical inflammation, 324 European ancestry individuals, 1206 Val Borbera (founder/genetic isolated) individuals without iron deficiency or clinical inflammation, 274 Val Borbera (founder/genetic isolated) individuals, 2,695 European ancestry individuals without iron deficiency or clinical inflammation, 207 individuals	NA	6p22.2	HFE	rs1800562-A	0.0608	1E-15	(Subset)	0.3455	[0.26-0.43] unit decrease	Illumina [up to 38043574] (imputed)	N
784	chr6	26093140	26093141	rs1800562	27846281	Galesloot TE	2016-11-15	PLoS One	Meta-GWAS and Meta-Analysis of Exome Array Studies Do Not Reveal Genetic Determinants of Serum Hepcidin.	Hepcidin/ferritin ratio	1495 European ancestry individuals without iron deficiency or clinical inflammation, 324 European ancestry individuals, 1206 Val Borbera (founder/genetic isolated) individuals without iron deficiency or clinical inflammation, 274 Val Borbera (founder/genetic isolated) individuals, 2,695 European ancestry individuals without iron deficiency or clinical inflammation, 207 individuals	NA	6p22.2	HFE	rs1800562-A	0.058	2E-14		0.3097	[0.23-0.39] unit decrease	Illumina [up to 38043574] (imputed)	N
784	chr6	26093140	26093141	rs1800562	25352340	Benyamin B	2014-10-29	Nat Commun	Novel loci affecting iron homeostasis and their effects in individuals at risk for hemochromatosis.	Iron status biomarkers (transferrin saturation)	23,986 European ancestry individuals	Up to 24,986 European ancestry individuals	6p22.2	HFE	rs1800562-A	0.067	2E-270		0.577	[0.55-0.61] unit increase	Affymetrix, Illumina [~ 2100000] (imputed)	N
784	chr6	26093140	26093141	rs1800562	25352340	Benyamin B	2014-10-29	Nat Commun	Novel loci affecting iron homeostasis and their effects in individuals at risk for hemochromatosis.	Iron status biomarkers (transferrin levels)	23,986 European ancestry individuals	Up to 24,986 European ancestry individuals	6p22.2	HFE	rs1800562-A	0.067	9E-196		0.479	[0.45-0.51] unit decrease	Affymetrix, Illumina [~ 2100000] (imputed)	N
784	chr6	26093140	26093141	rs1800562	25352340	Benyamin B	2014-10-29	Nat Commun	Novel loci affecting iron homeostasis and their effects in individuals at risk for hemochromatosis.	Iron status biomarkers (iron levels)	23,986 European ancestry individuals	Up to 24,986 European ancestry individuals	6p22.2	HFE	rs1800562-A	0.067	3E-97		0.328	[0.30-0.36] unit increase	Affymetrix, Illumina [~ 2100000] (imputed)	N
784	chr6	26093140	26093141	rs1800562	25352340	Benyamin B	2014-10-29	Nat Commun	Novel loci affecting iron homeostasis and their effects in individuals at risk for hemochromatosis.	Iron status biomarkers (ferritin levels)	23,986 European ancestry individuals	Up to 24,986 European ancestry individuals	6p22.2	HFE	rs1800562-A	0.067	2E-38		0.204	[0.17-0.24] unit increase	Affymetrix, Illumina [~ 2100000] (imputed)	N
784	chr6	26093140	26093141	rs1800562	25224454	Li J	2014-09-15	Hum Mol Genet	Genome-wide admixture and association study of serum iron, ferritin, transferrin saturation and total iron binding capacity in African Americans.	Iron status biomarkers	2,347 African American individuals	329 African American individuals	6p22.2	HFE	rs1800562-A	0.01	2E-6	(TIBC)	24.63	[14.58-34.68] unit decrease	Affymetrix [~ 17000000] (imputed)	N
784	chr6	26093140	26093141	rs1800562	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	6p22.2	HFE	rs1800562-A	0.07	8E-14		0.062	[NR] unit decrease	NR [NR] (imputed)	N
784	chr6	26093140	26093141	rs1800562	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	6p22.2	HFE	rs1800562-A	0.07	2E-12		0.056	[NR] unit decrease	NR [NR] (imputed)	N
784	chr6	26093140	26093141	rs1800562	23446634	Chen Z	2013-02-26	Hum Mol Genet	Genome-wide association analysis of red blood cell traits in African Americans: the COGENT Network.	Red blood cell traits	Up to 16,485 African American individuals	9,692 African American individuals, 21,020 European ancestry individuals, 14,088 Japanese ancestry individuals	6p22.2	HFE	rs1800562-A	0.0151	4E-6	(Hgb, AA)	0.2388	[0.14-0.34] g/dL increase	Affymetrix, Illumina [NR]	N
784	chr6	26093140	26093141	rs1800562	23263863	Li J	2012-12-20	Hum Mol Genet	GWAS of blood cell traits identifies novel associated loci and epistatic interactions in Caucasian and African-American children.	Mean corpuscular hemoglobin	7,943 African American children, 6,234 European ancestry children	NA	6p22.2	HFE	rs1800562-A	NR	7E-9		0.3558	[0.24-0.48] unit increase	Illumina [544917]	N
784	chr6	26093140	26093141	rs1800562	23263863	Li J	2012-12-20	Hum Mol Genet	GWAS of blood cell traits identifies novel associated loci and epistatic interactions in Caucasian and African-American children.	Hematology traits	7,943 African American children, 6,234 European ancestry children	NA	6p22.2	HFE	rs1800562-A	NR	2E-6	(HGB)	0.1944	[0.11-0.27] unit increase	Illumina [544917]	N
784	chr6	26093140	26093141	rs1800562	21943158	Middelberg RP	2011-09-24	BMC Med Genet	Genetic variants in LPL, OASL and TOMM40/APOE-C1-C2-C4 genes are associated with multiple cardiovascular-related traits.	Cardiovascular disease risk factors	11,683 European ancestry individuals	NA	6p22.2	HFE	rs1800562-A	0.08	5E-12	(FERR)	0.177	[0.13-0.23] mg/l increase	Illumina [NR] (imputed)	N
784	chr6	26093140	26093141	rs1800562	21785125	Traglia M	2011-07-25	J Med Genet	Association of HFE and TMPRSS6 genetic variants with iron and erythrocyte parameters is only in part dependent on serum hepcidin concentrations.	Hepcidin levels	1,657 Val Borbera (founder/genetic isolate) individuals	NA	6p22.2	HFE	rs1800562-?	NR	5E-11	(Tf)	0.51	[0.36-0.66] ng/ml decrease	Illumina [343866]	N
784	chr6	26093140	26093141	rs1800562	21785125	Traglia M	2011-07-25	J Med Genet	Association of HFE and TMPRSS6 genetic variants with iron and erythrocyte parameters is only in part dependent on serum hepcidin concentrations.	Hepcidin levels	1,657 Val Borbera (founder/genetic isolate) individuals	NA	6p22.2	HFE	rs1800562-?	NR	4E-9	(Iron)	0.442	[0.29-0.59] ng/ml increase	Illumina [343866]	N
784	chr6	26093140	26093141	rs1800562	21785125	Traglia M	2011-07-25	J Med Genet	Association of HFE and TMPRSS6 genetic variants with iron and erythrocyte parameters is only in part dependent on serum hepcidin concentrations.	Hepcidin levels	1,657 Val Borbera (founder/genetic isolate) individuals	NA	6p22.2	HFE	rs1800562-?	NR	3E-7	(ferritin)	0.389	[0.24-0.54] ng/ml increase	Illumina [343866]	N
784	chr6	26093140	26093141	rs1800562	21785125	Traglia M	2011-07-25	J Med Genet	Association of HFE and TMPRSS6 genetic variants with iron and erythrocyte parameters is only in part dependent on serum hepcidin concentrations.	Hepcidin levels	1,657 Val Borbera (founder/genetic isolate) individuals	NA	6p22.2	HFE	rs1800562-?	NR	3E-15	(Tf Sat)	0.61	[0.46-0.76] ng/ml increase	Illumina [343866]	N
784	chr6	26093140	26093141	rs1800562	21665994	Kutalik Z	2011-06-10	Hum Mol Genet	Genome-wide association study identifies two loci strongly affecting transferrin glycosylation.	Alcohol consumption (transferrin glycosylation)	5,181 European ancestry individuals	2,284 European ancestry individauls	6p22.2	HFE	rs1800562-A	0.045	2E-32	(Total transferrin)	0.629	[0.53-0.73] unit decrease	Affymetrix [390631] (imputed)	N
784	chr6	26093140	26093141	rs1800562	21483845	McLaren CE	2011-03-31	PLoS One	Genome-wide association study identifies genetic loci associated with iron deficiency.	Iron status biomarkers	336 European ancestry iron deficiency cases, 343 European ancestry controls	71 European ancestry iron deficiency cases, 161 European ancestry controls	6p22.2	HFE	rs1800562-A	NR	6E-10	(Unsaturated iron-binding capacity)	44.27	[NR] ug/dL decrease	Illumina [331060]	N
784	chr6	26093140	26093141	rs1800562	21483845	McLaren CE	2011-03-31	PLoS One	Genome-wide association study identifies genetic loci associated with iron deficiency.	Iron status biomarkers	336 European ancestry iron deficiency cases, 343 European ancestry controls	71 European ancestry iron deficiency cases, 161 European ancestry controls	6p22.2	HFE	rs1800562-A	NR	3E-8	(Total iron-binding capacity)	35.36	[NR] ug/dL decrease	Illumina [331060]	N
784	chr6	26093140	26093141	rs1800562	20927387	Kullo IJ	2010-09-28	PLoS One	A genome-wide association study of red blood cell traits using the electronic medical record.	Red blood cell traits	3,012 European ancestry individuals	NA	6p22.2	HFE	rs1800562-A	0.06	6E-7	(MCV)	1.09	[NR] unit increase	Illumina [489421]	N
784	chr6	26093140	26093141	rs1800562	20927387	Kullo IJ	2010-09-28	PLoS One	A genome-wide association study of red blood cell traits using the electronic medical record.	Red blood cell traits	3,012 European ancestry individuals	NA	6p22.2	HFE	rs1800562-A	0.06	3E-9	(MCH)	0.49	[NR] unit increase	Illumina [489421]	N
784	chr6	26093140	26093141	rs1800562	20927387	Kullo IJ	2010-09-28	PLoS One	A genome-wide association study of red blood cell traits using the electronic medical record.	Red blood cell traits	3,012 European ancestry individuals	NA	6p22.2	HFE	rs1800562-A	0.06	3E-9	(MCH)	0.49	[0.33-0.65] unit increase	Illumina [489421]	N
784	chr6	26093140	26093141	rs1800562	20858683	Soranzo N	2010-09-21	Diabetes	Common variants at 10 genomic loci influence hemoglobin A?(C) levels via glycemic and nonglycemic pathways.	Glycated hemoglobin levels	up to 46,368 European ancestry individuals	NA	6p22.2	HFE	rs1800562-G	0.94	3E-20		0.06	[0.05-0.07] % increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
784	chr6	26093140	26093141	rs1800562	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	LDL cholesterol	95,454 European ancestry individuals	NA	6p22.2	HFE, HIST1H4C	rs1800562-A	0.06	6E-10		2.22	[1.46-2.98] mg/dL decrease	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
784	chr6	26093140	26093141	rs1800562	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	Cholesterol, total	100,184 European ancestry individuals	NA	6p22.2	HFE, HIST1H4C	rs1800562-A	0.06	2E-8		2.16	[1.32-3] mg/dL decrease	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
784	chr6	26093140	26093141	rs1800562	19862010	Ganesh SK	2009-10-11	Nat Genet	Multiple loci influence erythrocyte phenotypes in the CHARGE Consortium.	Mean corpuscular volume	24,167 European ancestry individuals	9,456 European ancestry individuals	6p22.2	HFE	rs1800562-A	NR	1E-46		0.01	[0.010-0.014] fl increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
784	chr6	26093140	26093141	rs1800562	19862010	Ganesh SK	2009-10-11	Nat Genet	Multiple loci influence erythrocyte phenotypes in the CHARGE Consortium.	Hemoglobin	24,167 European ancestry individuals	9,456 European ancestry individuals	6p22.2	HFE	rs1800562-A	NR	6E-19		0.16	[0.13-0.20] g/dl increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
784	chr6	26093140	26093141	rs1800562	19862010	Ganesh SK	2009-10-11	Nat Genet	Multiple loci influence erythrocyte phenotypes in the CHARGE Consortium.	Hematocrit	24,167 European ancestry individuals	9,456 European ancestry individuals	6p22.2	HFE	rs1800562-A	NR	2E-9		0.31	[0.21-0.41] % increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
784	chr6	26093140	26093141	rs1800562	19820699	Benyamin B	2009-10-11	Nat Genet	Common variants in TMPRSS6 are associated with iron status and erythrocyte volume.	Iron status biomarkers	4,818 European ancestry individuals	3,470 European ancestry individuals	6p22.2	HFE	rs1800562-A	0.08	5E-7	(Hgb)	0.2	[0.12-0.28] s.d. increase	Illumina, Perlegen [427037]	N
784	chr6	26093140	26093141	rs1800562	19820699	Benyamin B	2009-10-11	Nat Genet	Common variants in TMPRSS6 are associated with iron status and erythrocyte volume.	Iron status biomarkers	4,818 European ancestry individuals	3,470 European ancestry individuals	6p22.2	HFE	rs1800562-A	0.08	2E-8	(MCV)	0.22	[0.14-0.30] s.d. increase	Illumina, Perlegen [427037]	N
784	chr6	26093140	26093141	rs1800562	19820697	Soranzo N	2009-10-11	Nat Genet	A genome-wide meta-analysis identifies 22 loci associated with eight hematological parameters in the HaemGen consortium.	Hematological parameters	4,627 European ancestry individuals	9,316 European ancestry individuals	6p22.2	HFE	rs1800562-A	NR	1E-23	(MCV)	1.41	[1.13-1.69] fl increase	Affymetrix, Illumina [~ 2110000] (imputed)	N
784	chr6	26093140	26093141	rs1800562	19084217	Benyamin B	2008-12-17	Am J Hum Genet	Variants in TF and HFE explain approximately 40% of genetic variation in serum-transferrin levels.	Iron status biomarkers	459 European ancestry twin pairs	NA	6p22.2	HFE	rs1800562-?	NR	4E-15	(transferrin saturation)			Illumina [315887]	N
784	chr6	26093140	26093141	rs1800562	19084217	Benyamin B	2008-12-17	Am J Hum Genet	Variants in TF and HFE explain approximately 40% of genetic variation in serum-transferrin levels.	Iron status biomarkers	459 European ancestry twin pairs	NA	6p22.2	HFE	rs1800562-?	NR	4E-11	(serum iron)	0.66	[0.46-0.86] s.d. increase	Illumina [315887]	N
784	chr6	26093140	26093141	rs1800562	19084217	Benyamin B	2008-12-17	Am J Hum Genet	Variants in TF and HFE explain approximately 40% of genetic variation in serum-transferrin levels.	Iron status biomarkers	459 European ancestry twin pairs	NA	6p22.2	HFE	rs1800562-?	NR	1E-10	(serum transferrin)	0.68	[0.48-0.88] s.d. decrease	Illumina [315887]	N
784	chr6	26094025	26094026	rs2858996	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p22.2		rs2858996-?	NR	7E-10		0.0151712	[0.01-0.02] unit increase	Affymetrix [20259828] (imputed)	N
784	chr6	26094366	26094367	rs1572982	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	6p22.2	NR	rs1572982-A	NR	3E-8		0.0132	[0.0085-0.0179] unit decrease	Affymetrix [10847151] (imputed)	N
784	chr6	26097383	26097384	rs6918586	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	6p22.2	NR	rs6918586-T	NR	6E-10		1.07	[NR]	Illumina [7158791] (imputed)	N
784	chr6	26098473	26098474	rs79220007	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium LDL	115,082 European ancestry individuals	NA	6p22.2		rs79220007-T	0.923917	6E-13		0.0561052	[0.041-0.071] unit increase	NR [11722792] (imputed)	N
784	chr6	26098473	26098474	rs79220007	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large LDL	115,082 European ancestry individuals	NA	6p22.2		rs79220007-T	0.923917	3E-14		0.0585907	[0.043-0.074] unit increase	NR [11722792] (imputed)	N
784	chr6	26098473	26098474	rs79220007	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in LDL	115,082 European ancestry individuals	NA	6p22.2		rs79220007-T	0.923917	3E-14		0.0588314	[0.044-0.074] unit increase	NR [11722792] (imputed)	N
784	chr6	26098473	26098474	rs79220007	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol minus HDL-C levels	115,082 European ancestry individuals	NA	6p22.2		rs79220007-T	0.923917	5E-11		0.0508103	[0.036-0.066] unit increase	NR [11722792] (imputed)	N
784	chr6	26098473	26098474	rs79220007	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium LDL	115,082 European ancestry individuals	NA	6p22.2		rs79220007-T	0.923917	9E-14		0.058106	[0.043-0.073] unit increase	NR [11722792] (imputed)	N
784	chr6	26098473	26098474	rs79220007	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	LDL cholesterol levels	115,082 European ancestry individuals	NA	6p22.2		rs79220007-T	0.923917	1E-14		0.0600044	[0.045-0.075] unit increase	NR [11722792] (imputed)	N
784	chr6	26098473	26098474	rs79220007	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small LDL particles	115,082 European ancestry individuals	NA	6p22.2		rs79220007-T	0.923917	4E-11		0.0515165	[0.036-0.067] unit increase	NR [11722792] (imputed)	N
784	chr6	26098473	26098474	rs79220007	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium LDL particles	115,082 European ancestry individuals	NA	6p22.2		rs79220007-T	0.923917	4E-11		0.0515152	[0.036-0.067] unit increase	NR [11722792] (imputed)	N
784	chr6	26098473	26098474	rs79220007	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of LDL particles	115,082 European ancestry individuals	NA	6p22.2		rs79220007-T	0.923917	2E-11		0.0521807	[0.037-0.067] unit increase	NR [11722792] (imputed)	N
784	chr6	26098473	26098474	rs79220007	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small LDL	115,082 European ancestry individuals	NA	6p22.2		rs79220007-T	0.923917	7E-12		0.0534148	[0.038-0.069] unit increase	NR [11722792] (imputed)	N
784	chr6	26098473	26098474	rs79220007	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium LDL	115,082 European ancestry individuals	NA	6p22.2		rs79220007-T	0.923917	4E-11		0.0516307	[0.036-0.067] unit increase	NR [11722792] (imputed)	N
784	chr6	26098473	26098474	rs79220007	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large LDL	115,082 European ancestry individuals	NA	6p22.2		rs79220007-T	0.923917	4E-14		0.0584479	[0.043-0.074] unit increase	NR [11722792] (imputed)	N
784	chr6	26098473	26098474	rs79220007	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in LDL	115,082 European ancestry individuals	NA	6p22.2		rs79220007-T	0.923917	2E-13		0.0573651	[0.042-0.073] unit increase	NR [11722792] (imputed)	N
784	chr6	26098473	26098474	rs79220007	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	6p22.2		rs79220007-T	0.923917	4E-13		0.0566863	[0.041-0.072] unit increase	NR [11722792] (imputed)	N
784	chr6	26098473	26098474	rs79220007	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large LDL	115,082 European ancestry individuals	NA	6p22.2		rs79220007-T	0.923917	7E-15		0.0599888	[0.045-0.075] unit increase	NR [11722792] (imputed)	N
784	chr6	26098473	26098474	rs79220007	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	6p22.2		rs79220007-C	NR	3E-212		0.1372	[0.13-0.15] unit increase	Affymetrix, Illumina [20536605] (imputed)	N
784	chr6	26098473	26098474	rs79220007	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	6p22.2		rs79220007-C	NR	8E-9		0.024	[0.016-0.032] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
784	chr6	26098473	26098474	rs79220007	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p22.2		rs79220007-T	0.923	8E-21				Affymetrix [10369434] (imputed)	N
784	chr6	26098473	26098474	rs79220007	34450027	Boer CG	2021-08-24	Cell	Deciphering osteoarthritis genetics across 826,690 individuals from 9 populations.	Osteoarthritis (hip)	36,445 European ancestry cases, 316,943 European ancestry controls	NA	6p22.2		rs79220007-T	0.9265	2E-9		0.8995146	[0.868844281-0.931267575]	Affymetrix, Illumina [NR] (imputed)	N
784	chr6	26098473	26098474	rs79220007	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	6p22.2	HFE	rs79220007-C	0.076359	1E-108		0.09459435	[0.086-0.103] unit increase	Affymetrix [93095623] (imputed)	N
784	chr6	26098473	26098474	rs79220007	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6p22.2	HFE	rs79220007-C	0.076352	2E-102		0.09144403	[0.083-0.1] unit increase	Affymetrix [93095623] (imputed)	N
784	chr6	26098473	26098474	rs79220007	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p22.2	NR	rs79220007-C	0.0563257	2E-267				Affymetrix, Illumina [24558453] (imputed)	N
784	chr6	26098473	26098474	rs79220007	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	6p22.2	NR	rs79220007-C	0.073069	1E-267		0.123543	[0.12-0.13] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
784	chr6	26098473	26098474	rs79220007	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	6p22.2	HFE	rs79220007-T	0.923867	2E-48		0.0574396	[0.05-0.065] unit increase	Affymetrix [NR] (imputed)	N
784	chr6	26098473	26098474	rs79220007	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	6p22.2	HFE	rs79220007-T	0.923907	3E-43		0.0539299	[0.046-0.062] unit increase	Affymetrix [NR] (imputed)	N
784	chr6	26098473	26098474	rs79220007	30670697	Kilpelainen TO	2019-01-22	Nat Commun	Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity.	LDL cholesterol x physical activity interaction (2df test)	7,260 African American inactive individuals, 12,761 African American active individuals, 2,740 Asian ancestry inactive individuals, 3,615 Asian ancestry active individuals, 22,378 European ancestry inactive individuals, 55,310 European ancestry active individuals, 2,163 Hispanic or Latin American inactive individuals, 3,461 Hispanic or Latin American active individuals	571 African American inactive individuals, 1,521 African American active individuals, 1,217 South African Black ancestry inactive individuals, 389 South African Black ancestry active individuals, 2,495 East Asian ancestry inactive individuals, 1,947 East Asian ancestry active individuals,  724 South Asian ancestry inactive individuals, 1,425 South Asian ancestry active individuals,  33,796 European ancestry inactive individuals, 50,812 European ancestry active individuals, 2,578 Hispanic inactive individuals, 8,661 Hispanic active individuals	6p22.2	NR	rs79220007-T	0.9473	7E-16				Affymetrix, Illumina [at least 2500000] (imputed)	N
784	chr6	26098473	26098474	rs79220007	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	6p22.2	HFE	rs79220007-C	NR	2E-135		0.180118	[0.17-0.19] unit decrease	Affymetrix [16832071] (imputed)	N
784	chr6	26098473	26098474	rs79220007	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	6p22.2	HFE	rs79220007-C	0.0768	5E-88		0.1340241	[0.12-0.15] unit increase	Affymetrix [~ 2500000] (imputed)	N
784	chr6	26098473	26098474	rs79220007	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	6p22.2	HFE	rs79220007-C	0.0768	2E-70		0.119551	[0.11-0.13] unit increase	Affymetrix [~ 2500000] (imputed)	N
784	chr6	26098473	26098474	rs79220007	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin concentration	172,851 European ancestry individuals	NA	6p22.2	HFE	rs79220007-C	0.0767	1E-209		0.201	[0.19-0.21] unit increase	Affymetrix [~ 2500000] (imputed)	N
784	chr6	26098473	26098474	rs79220007	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	6p22.2	HFE	rs79220007-C	0.0768	1E-42		0.09205511	[0.079-0.105] unit increase	Affymetrix [~ 2500000] (imputed)	N
784	chr6	26098473	26098474	rs79220007	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	6p22.2	HFE	rs79220007-C	0.0768	2E-36		0.08471254	[0.072-0.098] unit increase	Affymetrix [~ 2500000] (imputed)	N
784	chr6	26102707	26102708	rs198856	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	6p22.2	NR	rs198856-A	0.533493252633372	3E-10		0.0073203994	[0.005-0.0096] unit increase	NR [NR]	N
784	chr6	26104095	26104096	rs198853	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p22.2	HIST1H4C	rs198853-T	0.6835	5E-6		0.0316	[0.018-0.045] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
784	chr6	26104279	26104280	rs2229768	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6p22.2	NR	rs2229768-C	0.2381	8E-11		1.046	[1.032-1.059]	Affymetrix [15688218] (imputed)	N
784	chr6	26104279	26104280	rs2229768	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	6p22.2	HIST1H4C	rs2229768-T	0.76224	1E-10		0.0138724	[0.0097-0.0181] unit increase	NR [13737936] (imputed)	N
784	chr6	26104631	26104632	rs198851	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls, 22,356 East Asian ancestry cases, 156,370 East Asian ancestry controls	NA	6p22.2		rs198851-G	NR	3E-9		0.0614	[0.041-0.082] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
784	chr6	26104631	26104632	rs198851	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	6p22.2		rs198851-G	0.970481	9E-31		0.12224	[0.1-0.14] unit decrease	Illumina [13476299] (imputed)	N
784	chr6	26104631	26104632	rs198851	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Liver iron content	32,858 European ancestry individuals	NA	6p22.2	HIST1H4C	rs198851-?	NR	3E-73	(conditional)	0.194	NR mg/g decrease	Affymetrix [9390170] (imputed)	N
784	chr6	26104631	26104632	rs198851	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	6p22.2	HIST1H1T, HIST1H4C	rs198851-G	0.849521	9E-546		0.16328977	[0.16-0.17] unit increase	Affymetrix [93095623] (imputed)	N
784	chr6	26104631	26104632	rs198851	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	6p22.2	HIST1H1T, HIST1H4C	rs198851-G	0.849748	1E-15		0.025256565	[0.019-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
784	chr6	26104631	26104632	rs198851	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	6p22.2	HIST1H1T, HIST1H4C	rs198851-G	0.849615	1E-814		0.161433	[0.16-0.17] unit decrease	Affymetrix [93095623] (imputed)	N
784	chr6	26104631	26104632	rs198851	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	6p22.2	HIST1H1T, HIST1H4C	rs198851-G	0.849578	4E-1209		0.24850836	[0.24-0.26] unit decrease	Affymetrix [93095623] (imputed)	N
784	chr6	26104631	26104632	rs198851	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	6p22.2	HIST1H1T, HIST1H4C	rs198851-G	0.849698	4E-83		0.06047123	[0.054-0.067] unit decrease	Affymetrix [93095623] (imputed)	N
784	chr6	26104631	26104632	rs198851	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6p22.2	HIST1H1T, HIST1H4C	rs198851-G	0.849685	3E-69		0.055463873	[0.049-0.062] unit decrease	Affymetrix [93095623] (imputed)	N
784	chr6	26104631	26104632	rs198851	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	6p22.2	HIST1H1T, HIST1H4C	rs198851-G	0.849614	1E-353		0.12501039	[0.12-0.13] unit decrease	Affymetrix [93095623] (imputed)	N
784	chr6	26104631	26104632	rs198851	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	6p22.2	HIST1H1T, HIST1H4C	rs198851-G	0.849622	3E-178		0.09053122	[0.084-0.097] unit decrease	Affymetrix [93095623] (imputed)	N
784	chr6	26104631	26104632	rs198851	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	121,047 East Asian ancestry individuals	NA	6p22.2	NR	rs198851-T	0.029847	5E-14		0.09021	[0.067-0.114] SD units increase	Affymetrix, Illumina [16286195] (imputed)	N
784	chr6	26104631	26104632	rs198851	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p22.2	NR	rs198851-G	0.875622	5E-373				Affymetrix, Illumina [21126107] (imputed)	N
784	chr6	26104631	26104632	rs198851	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	6p22.2	NR	rs198851-T	0.150861	2E-8		0.01486	[0.0097-0.02] unit increase	NR [NR]	N
784	chr6	26104631	26104632	rs198851	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	6p22.2	HIST1H4C	rs198851-T	0.144	6E-13		0.038954	[0.028-0.05] mg/dL increase	Affymetrix, Illumina [8217339] (imputed)	N
784	chr6	26104631	26104632	rs198851	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls	NA	6p22.2	HIST1H4C	rs198851-T	0.150702	1E-9		0.06680737	[0.045-0.088] unit increase	Affymetrix [7288503] (imputed)	N
784	chr6	26104631	26104632	rs198851	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	6p22.2	HIST1H4C	rs198851-T	0.1418	3E-13		0.3513	[0.26-0.45] mmHg increase	Affymetrix [NR] (imputed)	N
784	chr6	26104631	26104632	rs198851	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption (light vs heavy) interaction (2df test)	56,705 European ancestry heavy and light drinkers, 9,725 African American or Afro-Caribbean heavy and light drinkers, 1,789 Asian ancestry heavy and light drinkers, 4,812 Hispanic or Latin American heavy and light drinkers	42,077 European ancestry heavy drinkers, 217 African American heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic ancestry heavy drinkers, 74,701 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	6p22.2	HIST1H4C	rs198851-T	0.15	7E-15	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
784	chr6	26104631	26104632	rs198851	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption interaction (2df test)	63,607 European ancestry drinkers, 10,193 African American or Afro-Caribbean drinkers, 2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,492 European ancestry non-drinkers, 11,223 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,058 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	6p22.2	HIST1H4C	rs198851-T	0.15	3E-33	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
784	chr6	26104631	26104632	rs198851	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption (light vs heavy) interaction (2df test)	12,758 European ancestry heavy drinkers, 1,326 African American or Afro-Caribbean heavy drinkers, 648 Asian ancestry heavy drinkers, 364 Hispanic or Latin American heavy drinkers, 43,947 European ancestry light drinkers, 8,239 African American or Afro-Caribbean light drinkers, 1,141 Asian ancestry light drinkers, 4,448 Hispanic or Latin American light drinkers	42,079 European ancestry heavy drinkers, 217 African American or Afro-Caribbean heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic ancestry heavy drinkers, 74,757 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	6p22.2	HIST1H4C	rs198851-T	0.15	1E-16	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
784	chr6	26104631	26104632	rs198851	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	6p22.2	HIST1H1T, HIST1H4C	rs198851-G	0.8497	3E-161		0.1336101	[0.12-0.14] unit increase	Affymetrix [~ 2500000] (imputed)	N
784	chr6	26104631	26104632	rs198851	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	6p22.2	HIST1H1T, HIST1H4C	rs198851-G	0.8498	2E-229		0.1589257	[0.15-0.17] unit decrease	Affymetrix [~ 2500000] (imputed)	N
784	chr6	26104631	26104632	rs198851	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	6p22.2	HIST1H1T, HIST1H4C	rs198851-G	0.8498	1E-336		0.1933855	[0.18-0.2] unit decrease	Affymetrix [~ 2500000] (imputed)	N
784	chr6	26104631	26104632	rs198851	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	6p22.2	HIST1H1T, HIST1H4C	rs198851-G	0.8499	1E-9		0.03051617	[0.021-0.04] unit decrease	Affymetrix [~ 2500000] (imputed)	N
784	chr6	26106600	26106601	rs9393686	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6p22.2	HIST1H1T	rs9393686-A	NR	3E-9		0.0235325	[0.016-0.031] unit decrease	Affymetrix [321114] (imputed)	N
784	chr6	26106618	26106619	rs198847	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	6p22.2	NR	rs198847-A		2E-10		0.07	[0.05-0.09] unit increase	NR [NR]	N
784	chr6	26107462	26107463	rs198846	28898252	Wheeler E	2017-09-12	PLoS Med	Impact of common genetic determinants of Hemoglobin A1c on type 2 diabetes risk and diagnosis in ancestrally diverse populations: A transethnic genome-wide meta-analysis.	Glycated hemoglobin levels	88,355 European ancestry individuals	NA	6p22.2	HFE	rs198846-G	0.8293	1E-23		0.0218	[0.017-0.026] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
784	chr6	26107462	26107463	rs198846	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular volume	up to 29,946 European ancestry individuals, up to 6150 African American individuals, 15,074 East Asian individuals.	16,389 individuals of European and African American ancestry.	6p22.2	HFE, HIST1H1T	rs198846-?	NR	3E-37				NR [2500000] (imputed)	N
784	chr6	26107462	26107463	rs198846	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular hemoglobin concentration	up to 21,020 European ancestry individuals, up to 3,621 African American individuals, up to 15,062 East Asian individuals.	16,389 European and African American individuals.	6p22.2	HFE, HIST1H1T	rs198846-?	NR	1E-8				NR [2500000] (imputed)	N
784	chr6	26107462	26107463	rs198846	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Hemoglobin levels	up to 40,258 European ancestry individuals, 16,128 African American individuals, up to 15,252 East Asian ancestry individuals.	16,389 European and African American individuals	6p22.2	HFE, HIST1H1T	rs198846-?	NR	1E-8				Affymetrix, Illumina [2500000] (imputed)	N
784	chr6	26107462	26107463	rs198846	21909110	Wain LV	2011-09-11	Nat Genet	Genome-wide association study identifies six new loci influencing pulse pressure and mean arterial pressure.	Blood pressure	74,064 European ancestry individuals	48,607 European ancestry individuals	6p22.2	HFE	rs198846-G	0.86	2E-12	(Mean Arterial Pressure)	0.478	[0.35-0.61] mmHg decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
784	chr6	26107462	26107463	rs198846	20139978	Kamatani Y	2010-02-07	Nat Genet	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Mean corpuscular volume	14,364 Japanese ancestry individuals	NA	6p22.2	HFE	rs198846-A	0.06	2E-6		0.679	[0.402-0.956] unit increase	Illumina [561583]	N
784	chr6	26107462	26107463	rs198846	19820698	Chambers JC	2009-10-11	Nat Genet	Genome-wide association study identifies variants in TMPRSS6 associated with hemoglobin levels.	Hemoglobin	6,316 European ancestry individuals, 9,685 Indian Asian ancestry individuals	5,187 European ancestry individuals, 6,721 Indian Asian ancestry individuals	6p22.2	HFE	rs198846-A	NR	1E-8				Affymetrix, Illumina, Perlegen [NR]	N
784	chr6	26108116	26108117	rs146860658	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 130,976 European ancestry men	up to 62,500 European ancestry men	6p22.2	HIST1H1T	rs146860658-T	0.0019	8E-6		0.2662	[0.15-0.38] unit increase	Affymetrix, Illumina [at least 228985]	N
784	chr6	26108116	26108117	rs146860658	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	288,492 European ancestry individuals, up to 15,687 African American individuals, up to 29,315 South Asian ancestry individuals, up to 6,800 East Asian ancestry individuals, up to 4,075 Hispanic ancestry individuals	132,177 European ancestry individuals	6p22.2	HIST1H1T	rs146860658-T	0.00139999999999995	4E-8		0.229	[0.15-0.31] unit increase	Affymetrix, Illumina [at least 228985]	N
784	chr6	26108116	26108117	rs146860658	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	288,492 European ancestry individuals	132,177 European ancestry individuals	6p22.2	HIST1H1T	rs146860658-T	0.0017	8E-8		0.2288	[0.15-0.31] unit increase	Affymetrix, Illumina [at least 228985]	N
784	chr6	26109232	26109233	rs707892	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	6p22.2	HIST1H1T	rs707892-G	0.161939	2E-10		0.019850206	[0.014-0.026] unit increase	Affymetrix [93095623] (imputed)	N
784	chr6	26110683	26110683	rs11455177	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.2	HIST1H1T	rs11455177-CA	NR	9E-15		0.026675	[0.02-0.033] unit decrease	Affymetrix [321016] (imputed)	N
784	chr6	26110683	26110683	rs11455177	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p22.2	HIST1H1T	rs11455177-CA	NR	5E-19		0.0333816	[0.026-0.041] unit decrease	Affymetrix [323123] (imputed)	N
784	chr6	26112619	26112620	rs198839	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	6p22.2	HIST1H1T	rs198839-G	0.726441	2E-23		0.026390145	[0.021-0.032] unit increase	Affymetrix [93095623] (imputed)	N
784	chr6	26114507	26114508	rs198833	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6p22.2	HIST1H2BC	rs198833-A	0.843899	2E-168		0.08711706	[0.081-0.093] unit decrease	Affymetrix [93095623] (imputed)	N
784	chr6	26114507	26114508	rs198833	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular volume	108,256 Japanese ancestry individuals	NA	6p22.2	HIST1H1T, HIST1H2BC	rs198833-?	NR	3E-12		0.08815	[0.063-0.113] unit decrease novel	Illumina [6108953] (imputed)	N
784	chr6	26114507	26114508	rs198833	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	6p22.2	HIST1H2BC	rs198833-A	0.8443	5E-9		0.02950584	[0.02-0.039] unit increase	Affymetrix [~ 2500000] (imputed)	N
784	chr6	26116981	26116982	rs12206204	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p22.2	NR	rs12206204-T	0.0122	2E-8	(PCK1)	0.1672	NR unit increase	Illumina [1671387] (imputed)	N
784	chr6	26116981	26116982	rs12206204	19414484	Johnson AD	2009-05-04	Hum Mol Genet	Genome-wide association meta-analysis for total serum bilirubin levels.	Bilirubin levels	9,464 individuals	NA	6p22.2	HIST1H2BC	rs12206204-T	0.02	8E-7		0.18	[0.10-0.26] umol/l increase in log(tbil)	Affymetrix, Illumina [2555103] (imputed)	N
784	chr6	26118537	26118553	rs2307823	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	6p22.2	HIST1H2BC	rs2307823-C	0.81426	2E-20		0.028938334	[0.023-0.035] unit increase	Affymetrix [93095623] (imputed)	N
784	chr6	26118537	26118553	rs2307823	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	6p22.2	HIST1H2BC	rs2307823-C	0.814277	2E-22		0.030561456	[0.024-0.037] unit increase	Affymetrix [93095623] (imputed)	N
784	chr6	26118537	26118553	rs2307823	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	6p22.2	HIST1H2BC	rs2307823-C	0.809	3E-13		0.03590734	[0.026-0.046] unit increase	Affymetrix [~ 2500000] (imputed)	N
784	chr6	26118537	26118553	rs2307823	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	6p22.2	HIST1H2BC	rs2307823-C	0.8091	6E-9		0.02888218	[0.019-0.039] unit decrease	Affymetrix [~ 2500000] (imputed)	N
784	chr6	26118555	26118570	rs539633309	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in non-diabetics	152,624 European ancestry individuals, 36,369 African American individuals	NA	6p22.2	HFE	rs539633309-CAAAGATCAGTTTGGT	0.418	3E-9		0.336	[0.22-0.45] unit increase	Affymetrix [NR] (imputed)	N
784	chr6	26121277	26121278	rs144735131	29317602	Hall LS	2018-01-10	Transl Psychiatry	Genome-wide meta-analyses of stratified depression in Generation Scotland and UK Biobank.	Major depressive disorder	6,997 European ancestry female cases, 16,172 European ancestry female controls, 3,852 European ancestry male cases, 16,034 European ancestry male controls	NA	6p22.2	HIST1H2BC, HIST1A2AC	rs144735131-A	NR	2E-6		0.4	[0.24-0.56] unit decrease	Affymetrix, Illumina [7105178] (imputed)	N
784	chr6	26122501	26122502	rs198825	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	6p22.2	NR	rs198825-A	NR	2E-8		5.584	z score decrease	Affymetrix [10847151] (imputed)	N
784	chr6	26123501	26123502	rs115740542	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small LDL	115,082 European ancestry individuals	NA	6p22.2		rs115740542-T	0.926399	3E-14		0.0604767	[0.045-0.076] unit increase	NR [11722792] (imputed)	N
784	chr6	26123501	26123502	rs115740542	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total free cholesterol levels	115,082 European ancestry individuals	NA	6p22.2		rs115740542-T	0.926399	4E-10		0.0486806	[0.033-0.064] unit increase	NR [11722792] (imputed)	N
784	chr6	26123501	26123502	rs115740542	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total esterified cholesterol levels	115,082 European ancestry individuals	NA	6p22.2		rs115740542-T	0.926399	5E-12		0.0530411	[0.038-0.068] unit increase	NR [11722792] (imputed)	N
784	chr6	26123501	26123502	rs115740542	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol levels	115,082 European ancestry individuals	NA	6p22.2		rs115740542-T	0.926399	1E-11		0.0520967	[0.037-0.067] unit increase	NR [11722792] (imputed)	N
784	chr6	26123501	26123502	rs115740542	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Sphingomyelin levels	115,006 European ancestry individuals	NA	6p22.2		rs115740542-T	0.926411	1E-12		0.0527433	[0.038-0.067] unit increase	NR [11722792] (imputed)	N
784	chr6	26123501	26123502	rs115740542	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of linoleic acid to total fatty acids	115,006 European ancestry individuals	NA	6p22.2		rs115740542-T	0.926411	6E-9		0.0445895	[0.03-0.06] unit increase	NR [11722792] (imputed)	N
784	chr6	26123501	26123502	rs115740542	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	6p22.2		rs115740542-T	0.926399	2E-12		0.0530652	[0.038-0.068] unit decrease	NR [11722792] (imputed)	N
784	chr6	26123501	26123502	rs115740542	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small LDL	115,082 European ancestry individuals	NA	6p22.2		rs115740542-T	0.926399	3E-16		0.0648726	[0.049-0.08] unit increase	NR [11722792] (imputed)	N
784	chr6	26123501	26123502	rs115740542	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large LDL	115,082 European ancestry individuals	NA	6p22.2		rs115740542-T	0.926399	1E-13		0.0584527	[0.043-0.074] unit increase	NR [11722792] (imputed)	N
784	chr6	26123501	26123502	rs115740542	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in LDL	115,082 European ancestry individuals	NA	6p22.2		rs115740542-T	0.926399	2E-14		0.0605815	[0.045-0.076] unit increase	NR [11722792] (imputed)	N
784	chr6	26123501	26123502	rs115740542	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small LDL	115,082 European ancestry individuals	NA	6p22.2		rs115740542-T	0.926399	4E-19		0.0707991	[0.055-0.086] unit increase	NR [11722792] (imputed)	N
784	chr6	26123501	26123502	rs115740542	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	6p22.2		rs115740542-T	0.926399	3E-17		0.0670521	[0.051-0.083] unit increase	NR [11722792] (imputed)	N
784	chr6	26123501	26123502	rs115740542	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large LDL	115,082 European ancestry individuals	NA	6p22.2		rs115740542-T	0.926399	2E-16		0.0641466	[0.049-0.079] unit increase	NR [11722792] (imputed)	N
784	chr6	26123501	26123502	rs115740542	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in LDL	115,082 European ancestry individuals	NA	6p22.2		rs115740542-T	0.926399	3E-17		0.0663069	[0.051-0.082] unit increase	NR [11722792] (imputed)	N
784	chr6	26123501	26123502	rs115740542	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large LDL particles	115,082 European ancestry individuals	NA	6p22.2		rs115740542-T	0.926399	6E-11		0.0518371	[0.036-0.067] unit increase	NR [11722792] (imputed)	N
784	chr6	26123501	26123502	rs115740542	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Clinical LDL cholesterol levels	115,082 European ancestry individuals	NA	6p22.2		rs115740542-T	0.926399	2E-14		0.0607717	[0.045-0.076] unit increase	NR [11722792] (imputed)	N
784	chr6	26123501	26123502	rs115740542	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small LDL	115,082 European ancestry individuals	NA	6p22.2		rs115740542-T	0.926399	2E-14		0.0609825	[0.045-0.077] unit increase	NR [11722792] (imputed)	N
784	chr6	26123501	26123502	rs115740542	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein B levels	115,082 European ancestry individuals	NA	6p22.2		rs115740542-T	0.926399	5E-10		0.0494022	[0.034-0.065] unit increase	NR [11722792] (imputed)	N
784	chr6	26123501	26123502	rs115740542	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TF	5,345 Icelandic ancestry individuals	NA	6p22.2		rs115740542-C	0.06851	3E-26		0.361965	[0.3-0.43] unit decrease	Illumina [7506463] (imputed)	N
784	chr6	26123501	26123502	rs115740542	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NAALAD2	5,360 Icelandic ancestry individuals	NA	6p22.2		rs115740542-C	0.06851	4E-24		0.37297	[0.3-0.45] unit decrease	Illumina [7506463] (imputed)	N
784	chr6	26123501	26123502	rs115740542	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6p22.2	HIST1H2BC	rs115740542-C	NR	4E-8		0.0323922	[0.021-0.044] unit increase	Affymetrix [321114] (imputed)	N
784	chr6	26123501	26123502	rs115740542	33662382	Rogne T	2021-03-01	J Invest Dermatol	Genome-Wide Association Study Identifies LINC01184/SLC12A2 As Risk Locus for Skin and Soft Tissue Infections.	Skin and soft tissue infections	6,107 European ancestry cases and 399,239 European ancestry controls	1,657 European ancestry cases and 67,522 European ancestry controls	6p22.2	H2BC4	rs115740542-C	0.075	4E-7		1.17	[1.10-1.24]	Affymetrix, Illumina [9211777] (imputed)	N
784	chr6	26123501	26123502	rs115740542	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p22.2	NR	rs115740542-C	0.0544404	2E-580				Affymetrix, Illumina [24653286] (imputed)	N
784	chr6	26123501	26123502	rs115740542	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Osteoarthritis (hip)	15,704 European ancestry cases, 378,169 European ancestry controls	NA	6p22.2	NR	rs115740542-C	0.07	2E-8		1.13	[1.09-1.19]	Affymetrix, Illumina [up to 17000000] (imputed)	N
784	chr6	26123501	26123502	rs115740542	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Osteoarthritis	77,052 European ancestry cases, 378,169 European ancestry controls	NA	6p22.2	NR	rs115740542-C	0.07	9E-9		1.06	[1.04-1.08]	Affymetrix, Illumina [up to 17000000] (imputed)	N
784	chr6	26124242	26124243	rs198820	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6p22.2	HIST1H2BC	rs198820-A	NR	7E-11		0.0208013	[0.015-0.027] unit increase	Affymetrix [321114] (imputed)	N
784	chr6	26124242	26124243	rs198820	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.2	HIST1H2BC	rs198820-A	NR	4E-10		0.0182068	[0.013-0.024] unit increase	Affymetrix [321016] (imputed)	N
784	chr6	26124242	26124243	rs198820	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p22.2	HIST1H2BC	rs198820-A	NR	1E-11		0.0214887	[0.015-0.028] unit increase	Affymetrix [323123] (imputed)	N
784	chr6	26124633	26124634	rs4645	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	6p22.2	HIST1H2AC	rs4645-T	0.215579	1E-9		0.016967934	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
784	chr6	26128225	26128226	rs198813	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	6p22.2	HIST1H2AC	rs198813-T	NR	2E-10		0.01943674	[0.013-0.025] unit decrease	Affymetrix [NR]	N
784	chr6	26128409	26128410	rs198812	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption interaction (2df test)	91,110 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	237,996 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,315 European ancestry non-drinkers, 2,761 African ancestry non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	6p22.2	HIST1H2BC	rs198812-C	0.86	1E-14	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
784	chr6	26128445	26128446	rs198811	25986216	Toyoda H	2015-05-15	Brain Behav Immun	A polymorphism in CCR1/CCR3 is associated with narcolepsy.	Narcolepsy with cataplexy	409 Japanese ancestry cases, 1,562 Japanese ancestry controls	240 Japanese ancestry cases, 869 Japanese ancestry controls	6p22.2	HIST1H2AC	rs198811-A	0.810	1E-8		1.69	[1.41-2.03]	Affymetrix [525196]	N
784	chr6	26133069	26133070	rs36109883	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	6p22.2	NR	rs36109883-A	0.06	4E-12		1.23	[1.17-1.29]	Illumina [8468885] (imputed)	N
784	chr6	26133069	26133070	rs36109883	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	6p22.2	HIST1H2AC	rs36109883-A	0.0774	4E-20		0.438	[0.34-0.53] mmHg increase	Affymetrix [NR] (imputed)	N
784	chr6	26133069	26133070	rs36109883	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Squamous cell lung carcinoma	7,426 European ancestry cases, 55,627 European ancestry controls	NA	6p22.2	HIST1H2AC, HIST1H1E	rs36109883-A	0.068507564	6E-12		1.2887794	[1.198871275-1.385430147]	Illumina [10439017] (imputed)	N
784	chr6	26133069	26133070	rs36109883	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in ever smokers	23,223 European ancestry cases,  16,964 European ancestry controls	NA	6p22.2	HIST1H2AC, HIST1H1E	rs36109883-A	0.067018189	2E-7		1.1676731	[1.102051078-1.237202699]	Illumina [10439017] (imputed)	N
784	chr6	26133615	26133616	rs198806	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Schizophrenia (MTAG)	940,613 European ancestry individuals	NA			rs198806-?	NR	8E-10				NR [2625067]	N
784	chr6	26133615	26133616	rs198806	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA		Intergenic	rs198806-A	0.4005	6E-10	(MTAG)	0.0113	[0.0078-0.0148] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
784	chr6	26134671	26134672	rs198805	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p22.2	NR	rs198805-G	0.153208	4E-425				Affymetrix, Illumina [22063850] (imputed)	N
784	chr6	26139740	26139741	rs198801	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	6p22.2	HIST1H2AC	rs198801-T	0.63	4E-10		0.0076	[0.0052-0.01] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
784	chr6	26139932	26139933	rs198800	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	6p22.2	HIST1H1C	rs198800-T	0.479939	7E-9		5.8	z score increase	NR [10847151] (imputed)	N
784	chr6	26141374	26141375	rs806970	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.2	HIST1H2AC	rs806970-T	NR	1E-8		0.0310625	[0.02-0.042] unit decrease	Affymetrix [321016] (imputed)	N
784	chr6	26141374	26141375	rs806970	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p22.2	HIST1H2AC	rs806970-T	NR	2E-9		0.0354796	[0.024-0.047] unit decrease	Affymetrix [323123] (imputed)	N
784	chr6	26145157	26145158	rs72834694	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	6p22.2	NR	rs72834694-?	NR	1E-9	(right putamen)			NR [9227495] (imputed)	N
784	chr6	26145216	26145217	rs75499503	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		6p22.2	HIST1H2AC	rs75499503-C	0.77991	8E-12		0.0114761	[0.0082-0.0148] unit increase	Affymetrix [12370749]	N
784	chr6	26148325	26148326	rs806973	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	6p22.2	HIST1H1E	rs806973-A	0.611714	7E-10		0.0125629	[0.0086-0.0166] unit increase	Affymetrix [NR] (imputed)	N
784	chr6	26148325	26148326	rs806973	31212010	Cabana-Dominguez J	2019-06-15	Prog Neuropsychopharmacol Biol Psychiatry	Genome-wide association meta-analysis of cocaine dependence: Shared genetics with comorbid conditions.	Cocaine dependence	2,085 European ancestry cases, 4,293 European ancestry controls	NA	6p22.2	NR	rs806973-A	NR	3E-6		0.2008	[0.12-0.29] unit increase	Illumina [9290362] (imputed)	N
784	chr6	26148999	26149000	rs16891359	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p22.2	HIST1H1E	rs16891359-T	0.9405	4E-6		0.0734	[0.042-0.105] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
784	chr6	26151534	26151535	rs9358908	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.2	HIST1H1E	rs9358908-T	NR	3E-11		0.0349734	[0.025-0.045] unit decrease	Affymetrix [321016] (imputed)	N
784	chr6	26157480	26157481	rs4141885	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	6p22.2	HIST1H1E	rs4141885-A	0.918	8E-22		0.073	[0.057-0.089] unit increase	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
784	chr6	26157761	26157762	rs3857546	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.2	HIST1H1E	rs3857546-T	NR	8E-9		0.0251677	[0.017-0.034] unit decrease	Affymetrix [323858] (imputed)	N
784	chr6	26157761	26157762	rs3857546	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.2	HIST1H1E	rs3857546-T	NR	7E-9		0.0251932	[0.017-0.034] unit decrease	Affymetrix [127266] (imputed)	N
784	chr6	26158078	26158079	rs7749823	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Prostate cancer	7,438 White British ancestry cases, 118,206 White British ancestry controls	NA	6p22.2		rs7749823-?	NR	4E-6		0.891521	[0.84-0.94]	NR [680312]	N
784	chr6	26158078	26158079	rs7749823	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.2	HIST1H1E, HIST1H2BD	rs7749823-A	NR	4E-11		6.603	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
784	chr6	26158078	26158079	rs7749823	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	6p22.2	HIST1H1E, HIST1H2BD	rs7749823-A	NR	4E-10		0.025860917	[0.018-0.034] unit decrease	Affymetrix [NR]	N
784	chr6	26158992	26158993	rs1009181	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p22.2		rs1009181-T	0.621	9E-12				Affymetrix [10369434] (imputed)	N
784	chr6	26158992	26158993	rs1009181	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p22.2		rs1009181-T	0.621	2E-20				Affymetrix [10369434] (imputed)	N
784	chr6	26158992	26158993	rs1009181	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	6p22.2	NR	rs1009181-C	0.369	1E-18		0.00983185	[0.0076-0.012] unit decrease	NR [9732723] (imputed)	N
784	chr6	26158992	26158993	rs1009181	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	6p22.2	NR	rs1009181-?	NR	3E-6		0.0423	[0.025-0.06] unit decrease	Illumina [at least 560000] (imputed)	N
784	chr6	26159355	26159356	rs2183947	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	6p22.2		rs2183947-A	NR	1E-15		0.0193	[0.015-0.024] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
784	chr6	26159355	26159356	rs2183947	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p22.2	HIST1H2BD	rs2183947-A	NR	5E-23		0.0362087	[0.029-0.043] unit decrease	Affymetrix [323123] (imputed)	N
784	chr6	26159355	26159356	rs2183947	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6p22.2	NR	rs2183947-?	NR	8E-10				Affymetrix [~ 8270000] (imputed)	N
784	chr6	26159355	26159356	rs2183947	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (mother's age at death or mother's attained age)	up to 699,000 individuals	NA	6p22.2	NR	rs2183947-G		7E-7				Illumina [458525]	N
784	chr6	26163345	26163345	rs34285731	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.2	HIST1H2BD	rs34285731-AT	NR	3E-8		0.0176542	[0.011-0.024] unit decrease	Affymetrix [323858] (imputed)	N
784	chr6	26163345	26163345	rs34285731	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.2	HIST1H2BD	rs34285731-AT	NR	4E-9		0.0188086	[0.013-0.025] unit decrease	Affymetrix [127266] (imputed)	N
784	chr6	26163345	26163345	rs34285731	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6p22.2	HIST1H2BD	rs34285731-AT	NR	3E-25		0.032812	[0.027-0.039] unit decrease	Affymetrix [321114] (imputed)	N
784	chr6	26163345	26163345	rs34285731	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p22.2	HIST1H2BD	rs34285731-AT	NR	5E-12		0.0219133	[0.016-0.028] unit decrease	Affymetrix [323858] (imputed)	N
784	chr6	26167612	26167613	rs9366639	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	6p22.2		rs9366639-G	NR	7E-21		0.0281	[0.022-0.034] unit decrease	Affymetrix, Illumina [20529698] (imputed)	N
784	chr6	26167612	26167613	rs9366639	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	6p22.2	NR	rs9366639-C	0.821535	9E-24		0.0273998	[0.022-0.033] unit increase	NR [NR]	N
784	chr6	26168902	26168903	rs2066295	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6p22.2	HIST1H2BD	rs2066295-G	NR	4E-16		0.0299727	[0.023-0.037] unit decrease	Affymetrix [321114] (imputed)	N
784	chr6	26168902	26168903	rs2066295	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.2	HIST1H2BD	rs2066295-G	NR	2E-29		0.0377437	[0.031-0.044] unit decrease	Affymetrix [321016] (imputed)	N
784	chr6	26171249	26171250	rs1059490	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.2	HIST1H2BD	rs1059490-C	NR	9E-13		0.0206971	[0.015-0.026] unit decrease	Affymetrix [321016] (imputed)	N
784	chr6	26171249	26171250	rs1059490	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6p22.2	NR	rs1059490-?	NR	6E-16				Affymetrix [~ 8270000] (imputed)	N
784	chr6	26171249	26171250	rs1059490	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	6p22.2	NR	rs1059490-C	0.367	2E-12		0.018593546	[0.013-0.024] unit decrease	NR [~ 10000000] (imputed)	N
784	chr6	26171249	26171250	rs1059490	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	6p22.2	Intergenic	rs1059490-T	0.6341	9E-15	(MTAG)	0.0133	[0.01-0.0166] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
784	chr6	26171249	26171250	rs1059490	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	6p22.2	Intergenic	rs1059490-T	0.6341	1E-12		0.0167	[0.012-0.021] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
784	chr6	26172218	26172219	rs9379829	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	6p22.2	NR	rs9379829-?	NR	6E-10	(left putamen)			NR [9227495] (imputed)	N
784	chr6	26173252	26173254	rs761202278	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	6p22.2	HIST1H2BD	rs761202278-A	0.39729499999999995	6E-13		1.0465173	[1.03364422257173-1.0595505690207]	NR [9572556] (imputed)	N
784	chr6	26173477	26173478	rs34661691	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	65,967 individuals	NA	6p22.2	NR	rs34661691-?		6E-22				NR [8377093]	N
784	chr6	26173477	26173478	rs34661691	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	6p22.2	HIST1H2BE	rs34661691-T	0.867	9E-14		0.013	[0.0097-0.0163] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
784	chr6	26173934	26173934	rs113497279	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p22.2	HIST1H2BD	rs113497279-ATC	NR	3E-13		0.0230323	[0.017-0.029] unit decrease	Affymetrix [323123] (imputed)	N
784	chr6	26175851	26175852	rs9379831	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.2	HIST1H2BD	rs9379831-A	NR	4E-20		0.0279052	[0.022-0.034] unit decrease	Affymetrix [321016] (imputed)	N
784	chr6	26175851	26175852	rs9379831	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p22.2	HIST1H2BD	rs9379831-A	NR	2E-9		0.0199947	[0.013-0.026] unit decrease	Affymetrix [323123] (imputed)	N
784	chr6	26175851	26175852	rs9379831	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Meat-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	6p22.2	HIST1H2AC, HIST1H1E, HIST1H2BD, HIST1H2BE, HIST1H4D, HIST1H3D, HIST1H2AD, HIST1H2BF, HIST1H4E, HIST1H2BG, HIST1H2AE, HIST1H3E, HIST1H1D, HIST1H4F, HIST1H4G, HIST1H3F, HIST1H2BH	rs9379831-?	NR	7E-9		0.0152529	[0.01-0.02] unit increase	Affymetrix [25921788] (imputed)	N
784	chr6	26175865	26175866	rs17598658	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	6p22.2	NR	rs17598658-A	0.0656064	6E-14		0.095646225	[0.071-0.121] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
784	chr6	26175865	26175866	rs17598658	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p22.2	NR	rs17598658-C	0.0823	2E-9	(EA)	0.0726	[0.049-0.097] unit decrease	Illumina [~ 11800000] (imputed)	N
784	chr6	26176009	26176010	rs79267062	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p22.2	HIST1H2BE	rs79267062-T	0.9621	5E-6		0.0891	[0.051-0.127] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
784	chr6	26176516	26176517	rs72834698	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6p22.2	HIST1H2BD	rs72834698-A	NR	1E-11		0.030119	[0.021-0.039] unit decrease	Affymetrix [321114] (imputed)	N
784	chr6	26176516	26176517	rs72834698	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.2	HIST1H2BD	rs72834698-A	NR	1E-21		0.0384939	[0.031-0.046] unit decrease	Affymetrix [321016] (imputed)	N
784	chr6	26176516	26176517	rs72834698	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p22.2	HIST1H2BD	rs72834698-A	NR	6E-21		0.0413263	[0.033-0.05] unit decrease	Affymetrix [323123] (imputed)	N
784	chr6	26176516	26176517	rs72834698	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	6p22.2	NR	rs72834698-?		3E-13		0.0226559	[0.017-0.029] unit increase	Affymetrix [19400418] (imputed)	N
784	chr6	26176516	26176517	rs72834698	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	6p22.2	NR	rs72834698-G	0.857599	8E-11		0.0177982	[0.012-0.023] unit increase	Affymetrix [16583148] (imputed)	N
784	chr6	26176516	26176517	rs72834698	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	6p22.2	NR	rs72834698-?	NR	7E-9	(right putamen)			NR [9227495] (imputed)	N
784	chr6	26176516	26176517	rs72834698	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	6p22.2	NR	rs72834698-?	NR	7E-10	(left putamen)			NR [9227495] (imputed)	N
784	chr6	26176516	26176517	rs72834698	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6p22.2		rs72834698-A	0.144	5E-9		0.0117	[0.0078-0.0156] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
784	chr6	26176516	26176517	rs72834698	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6p22.2	Intergenic	rs72834698-A	0.144	9E-9	(MTAG)	0.0107	[0.007-0.0144] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
784	chr6	26180633	26180634	rs62396185	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	6p22.2	NR	rs62396185-?	NR	4E-8	(female)	0.21497	[0.14-0.29] unit decrease	Affymetrix [7794483] (imputed)	N
784	chr6	26180633	26180634	rs62396185	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	6p22.2	NR	rs62396185-?	NR	3E-15		0.18975	[0.14-0.24] unit decrease	Affymetrix [7794483] (imputed)	N
784	chr6	26180633	26180634	rs62396185	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	6p22.2	NR	rs62396185-?	NR	2E-8	(male)	0.16577	[0.11-0.22] unit decrease	Affymetrix [7794483] (imputed)	N
784	chr6	26183566	26183567	rs148268586	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.2	HIST1H2BE	rs148268586-G	NR	2E-8		0.0707186	[0.046-0.095] unit decrease	Affymetrix [321016] (imputed)	N
784	chr6	26184101	26184102	rs7766641	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking behaviour (cigarettes smoked per day)	up to 377,334 European ancestry individuals	NA	6p22.2	NR	rs7766641-A	0.272	3E-10		0.01728421	[0.012-0.023] unit decrease	NR [~ 10000000] (imputed)	N
784	chr6	26184101	26184102	rs7766641	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Cigarettes smoked per day (MTAG)	up to 403,928 European ancestry individuals	NA	6p22.2	NR	rs7766641-A	0.272	5E-15		0.019262	[0.014-0.024] unit decrease	NR [9732723] (imputed)	N
784	chr6	26184101	26184102	rs7766641	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p22.2	HIST1H2BE	rs7766641-A	0.2739	1E-18		0.0669	[0.052-0.082] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
784	chr6	26184101	26184102	rs7766641	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	Height	19,965 British ancestry individuals from 6863 families.	NA	6p22.2	HIST1H2BE	rs7766641-A	0.2551	3E-13		0.005613515	[0.0041-0.0071] m decrease	Illumina [24111857] (imputed)	N
784	chr6	26185402	26185403	rs80279176	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.2	HIST1H2BE	rs80279176-G	NR	8E-10		0.0412466	[0.028-0.054] unit decrease	Affymetrix [321016] (imputed)	N
784	chr6	26185402	26185403	rs80279176	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p22.2	HIST1H2BE	rs80279176-G	NR	4E-10		0.045855	[0.032-0.06] unit decrease	Affymetrix [323123] (imputed)	N
784	chr6	26186199	26186200	rs9379832	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6p22.2	HIST1H2BE	rs9379832-G	NR	4E-20		0.0329877	[0.026-0.04] unit decrease	Affymetrix [321114] (imputed)	N
784	chr6	26186199	26186200	rs9379832	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.2	HIST1H2BE	rs9379832-G	NR	5E-46		0.0464833	[0.04-0.053] unit decrease	Affymetrix [321016] (imputed)	N
784	chr6	26186199	26186200	rs9379832	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p22.2	HIST1H2BE	rs9379832-G	NR	2E-36		0.0448807	[0.038-0.052] unit decrease	Affymetrix [323123] (imputed)	N
784	chr6	26186199	26186200	rs9379832	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	6p22.2	HIST1H2BE	rs9379832-A	0.7447	4E-24		0.0221	[0.018-0.026] unit increase	Affymetrix [18391927] (imputed)	N
784	chr6	26186199	26186200	rs9379832	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	6p22.2	HIST1H2BE, HIST1H2BH	rs9379832-A	0.729516	1E-13		0.021965	[0.016-0.028] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
784	chr6	26186199	26186200	rs9379832	30181573	Jing J	2018-09-04	Sci Rep	Genetics of serum urate concentrations and gout in a high-risk population, patients with chronic kidney disease.	Serum urate levels in chronic kidney disease	4,941 European ancestry cases	NA	6p22.2	HIST1H2BE	rs9379832-G	0.33	9E-7		0.18	[0.11-0.25] mg/dl decrease	Illumina [9281895] (imputed)	N
784	chr6	26186199	26186200	rs9379832	27680694	Horikoshi M	2016-10-13	Nature	Genome-wide associations for birth weight and correlations with adult disease.	Birth weight	133,903 European ancestry individuals, 6,635 African American individuals, 420 Turkish ancestry individuals, 365 Moroccan ancestry individuals, 395 Surinamese ancestry individuals, 840 Chinese ancestry individuals.	9,799 European ancestry individuals, 1,449 Filipino ancestry individuals.	6p22.2	HIST1H2BE	rs9379832-A	0.71	1E-8		0.0237	[0.015-0.032] unit increase	Affymetrix, Illumina [at least 22434434] (imputed)	N
784	chr6	26189355	26189356	rs13204572	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	6p22.2		rs13204572-?	NR	8E-18		0.0443	unit decrease	NR [NR]	N
784	chr6	26189355	26189356	rs13204572	33204752	Butler-Laporte G	2020-09-24	Open Forum Infect Dis	Genetic Determinants of Antibody-Mediated Immune Responses to Infectious Diseases Agents: A Genome-Wide and HLA Association Study.	Varicella zoster virus glycoproteins E and I antibody levels	7,595 White British ancestry individuals	NA	6p22.2	HIST1H4D	rs13204572-G	0.892	1E-9		0.16	[0.11-0.21] unit decrease	NR [25472218] (imputed)	N
784	chr6	26189614	26189615	rs806977	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (father's age at death or father's attained age)	up to 699,000 European ancestry individuals	NA	6p22.2	NR	rs806977-A		5E-6				Illumina [458865]	N
784	chr6	26196592	26196593	rs67575965	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p22.2		rs67575965-A	0.767	6E-11				Affymetrix [10369434] (imputed)	N
784	chr6	26196592	26196593	rs67575965	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p22.2		rs67575965-A	0.767	9E-19				Affymetrix [10369434] (imputed)	N
784	chr6	26196592	26196593	rs67575965	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	65,967 individuals	NA	6p22.2	NR	rs67575965-?		2E-9				NR [8377093]	N
784	chr6	26196592	26196593	rs67575965	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	6p22.2	HIST1H3D	rs67575965-A	NR	2E-9	(EA)	1.083	[1.06-1.11]	Illumina [6627481] (imputed)	N
784	chr6	26196592	26196593	rs67575965	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	6p22.2	Intergenic	rs67575965-A	0.7859	4E-21		0.0224	[0.018-0.027] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
784	chr6	26198045	26198046	rs4145878	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.2	HIST1H3D	rs4145878-A	NR	4E-26		0.0293117	[0.024-0.035] unit decrease	Affymetrix [321016] (imputed)	N
784	chr6	26198045	26198046	rs4145878	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p22.2	HIST1H3D	rs4145878-A	NR	4E-12		0.021017	[0.015-0.027] unit decrease	Affymetrix [323123] (imputed)	N
784	chr6	26198045	26198046	rs4145878	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	6p22.2	RP1-34B20.21	rs4145878-A	0.5038	3E-8		0.038	[0.024-0.052] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
784	chr6	26199902	26199903	rs34961555	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling guilty	373,380 European ancestry individuals	NA	6p22.2	NR	rs34961555-T	0.0973315	5E-8		5.46	z score decrease	NR [10847151] (imputed)	N
784	chr6	26199902	26199903	rs34961555	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	6p22.2	HIST1H2BF	rs34961555-T	NR	4E-10		0.03226886	[0.022-0.042] unit increase	Affymetrix [NR]	N
784	chr6	26200676	26200677	rs806794	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Meat-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	6p22.2	HIST1H2BD, HIST1H2BE, HIST1H4D, HIST1H3D, HIST1H2AD, HIST1H2BF, HIST1H4E, HIST1H2BG, HIST1H2AE, HIST1H3E, HIST1H1D, HIST1H4F, HIST1H4G, HIST1H3F, HIST1H2BH	rs806794-?	NR	4E-9	(male)	0.0239072	[0.016-0.032] unit increase	Affymetrix [25921788] (imputed)	N
784	chr6	26200676	26200677	rs806794	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Meat-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	6p22.2	HIST1H2AC, HIST1H1E, HIST1H2BD, HIST1H2BE, HIST1H4D, HIST1H3D, HIST1H2AD, HIST1H2BF, HIST1H4E, HIST1H2BG, HIST1H2AE, HIST1H3E, HIST1H1D, HIST1H4F, HIST1H4G, HIST1H3F, HIST1H2BH	rs806794-?	NR	5E-13		0.0197927	[0.014-0.025] unit increase	Affymetrix [25921788] (imputed)	N
784	chr6	26200676	26200677	rs806794	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	6p22.2	NR	rs806794-?	NR	5E-7		0.02972375	[0.018-0.041] unit decrease	Illumina [34656550] (imputed)	N
784	chr6	26200676	26200677	rs806794	29227965	Pilling LC	2017-12-01	Aging (Albany NY)	Human longevity: 25 genetic loci associated in 389,166 UK biobank participants.	Parental longevity (combined parental attained age, Martingale residuals)	389,166 British ancestry individuals	NA	6p22.2	HIST1H2BF, HIST1H4E	rs806794-A	0.728	5E-6		0.0115	[0.0066-0.0164] unit increase	Affymetrix [11535925] (imputed)	N
784	chr6	26200676	26200677	rs806794	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p22.2	HIST1H2BF	rs806794-A	0.6986	8E-7	(EA, women)	0.0263	[0.016-0.037] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
784	chr6	26200676	26200677	rs806794	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p22.2	HIST1H2BF	rs806794-A	0.6986	3E-8	(EA, men)	0.0337	[0.022-0.046] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
784	chr6	26200676	26200677	rs806794	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p22.2	HIST1H2BF	rs806794-A	0.6986	1E-12	(EA)	0.0289	[0.021-0.037] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
784	chr6	26200676	26200677	rs806794	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p22.2	HIST1H2BF	rs806794-A	0.6885	5E-13		0.0275	[0.02-0.035] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
784	chr6	26200676	26200677	rs806794	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p22.2	HIST1H2BF	rs806794-A	0.6885	3E-9	(men)	0.0339	[0.023-0.045] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
784	chr6	26200676	26200677	rs806794	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p22.2	HIST1H2BF	rs806794-A	0.6885	2E-7	(women)	0.0293	[0.018-0.04] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
784	chr6	26200676	26200677	rs806794	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6p22.2	HIST1H2BF	rs806794-A	0.6986	3E-10	(EA)	0.0297	[0.02-0.039] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
784	chr6	26200676	26200677	rs806794	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6p22.2	HIST1H2BF	rs806794-A	0.6931	4E-8	(EA, men)	0.0374	[0.024-0.051] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
784	chr6	26200676	26200677	rs806794	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6p22.2	HIST1H2BF	rs806794-A	0.6885	2E-9		0.0268	[0.018-0.035] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
784	chr6	26200676	26200677	rs806794	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6p22.2	HIST1H2BF	rs806794-A	0.6877	1E-7	(men)	0.0348	[0.022-0.048] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
784	chr6	26200676	26200677	rs806794	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6p22.2	HIST1H2BF	rs806794-A	0.6784	2E-7	(women)	0.0329	[0.021-0.045] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
784	chr6	26200676	26200677	rs806794	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p22.2	HIST1H2BF	rs806794-?	0.6986	5E-8	(EA, men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
784	chr6	26200676	26200677	rs806794	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p22.2	HIST1H2BF	rs806794-?	0.6986	4E-6	(EA, women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
784	chr6	26200676	26200677	rs806794	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p22.2	HIST1H2BF	rs806794-?	0.6986	1E-11	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
784	chr6	26200676	26200677	rs806794	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p22.2	HIST1H2BF	rs806794-?	0.6885	8E-9	(men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
784	chr6	26200676	26200677	rs806794	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p22.2	HIST1H2BF	rs806794-?	0.6885	3E-12				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
784	chr6	26200676	26200677	rs806794	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p22.2	HIST1H2BF	rs806794-?	0.6885	2E-7	(women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
784	chr6	26200676	26200677	rs806794	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p22.2	HIST1H2BF	rs806794-A	0.6926	3E-7	(EA, men)	0.0268	[0.017-0.037] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
784	chr6	26200676	26200677	rs806794	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p22.2	HIST1H2BF	rs806794-A	0.6926	2E-9	(EA)	0.0223	[0.015-0.03] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
784	chr6	26200676	26200677	rs806794	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p22.2	HIST1H2BF	rs806794-A	0.6896	4E-19	(EA, women)	0.0452	[0.035-0.055] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
784	chr6	26200676	26200677	rs806794	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p22.2	HIST1H2BF	rs806794-A	0.6896	3E-17	(EA,men)	0.0482	[0.037-0.059] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
784	chr6	26200676	26200677	rs806794	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p22.2	HIST1H2BF	rs806794-A	0.6896	2E-31	(EA)	0.0461	[0.038-0.054] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
784	chr6	26200676	26200677	rs806794	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p22.2	HIST1H2BF	rs806794-A	0.6899	7E-13	(EA, men)	0.0391	[0.029-0.05] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
784	chr6	26200676	26200677	rs806794	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p22.2	HIST1H2BF	rs806794-A	0.6899	3E-16	(EA)	0.0324	[0.025-0.04] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
784	chr6	26200676	26200677	rs806794	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p22.2	HIST1H2BF	rs806794-A	0.6899	2E-7	(EA,women)	0.0268	[0.017-0.037] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
784	chr6	26200676	26200677	rs806794	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	6p22.2	HIST1H2BF	rs806794-A	0.27	8E-37		0.082	[0.066-0.098] unit increase	Affymetrix, Illumina [2704730] (imputed)	N
784	chr6	26200676	26200677	rs806794	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	6p22.2	HIST1H2BF	rs806794-A	0.71	5E-74		0.06	[0.054-0.066] unit increase	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
784	chr6	26200676	26200677	rs806794	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	6p22.2	HIST1H2BF	rs806794-A	0.7	1E-25		1.26	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
784	chr6	26200676	26200677	rs806794	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	6p22.2	Histone cluster	rs806794-A	0.7	1E-39		0.052	[NR] unit increase	Affymetrix, Illumina [2834208] (imputed)	N
784	chr6	26203909	26203910	rs11758351	27899376	Nakayama A	2016-11-29	Ann Rheum Dis	GWAS of clinically defined gout and subtypes identifies multiple susceptibility loci that include urate transporter genes.	Renal underexcretion gout	619 Japanese ancestry cases, 1,213 Japanese ancestry controls	696 Japanese ancestry cases, 1,268 Japanese ancestry controls	6p22.2	HIST1H2BF, HIST1H4E	rs11758351-G	0.121	9E-7		1.41	[1.23-1.61]	Illumina [570442]	N
784	chr6	26203909	26203910	rs11758351	27899376	Nakayama A	2016-11-29	Ann Rheum Dis	GWAS of clinically defined gout and subtypes identifies multiple susceptibility loci that include urate transporter genes.	Gout	945 Japanese ancestry cases, 1,213 Japanese ancestry controls	1,396 Japanese ancestry cases, 1,268 Japanese ancestry controls, 1,319 European ancestry cases, 514 European ancestry controls, 971 Polynesian ancestry cases, 565 Polynesian ancestry controls	6p22.2	HIST1H2BF, HIST1H4E	rs11758351-G	0.121	2E-8	(Japanese)	1.4	[1.25-1.57]	Illumina [570442]	N
784	chr6	26205292	26205293	rs806795	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	6p22.2	Intergenic	rs806795-G	NR	3E-6		0.024494	[0.014-0.035] unit decrease	Illumina [13520550] (imputed)	N
784	chr6	26207173	26207174	rs9393688	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	6p22.2	NR	rs9393688-?	NR	1E-8	(left pallidum)			NR [9227495] (imputed)	N
784	chr6	26207174	26207175	rs9379833	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Beef consumption	335,576 European ancestry individuals	NA	6p22.2	HIST1H2AC, HIST1H1E, HIST1H2BD, HIST1H2BE, HIST1H4D, HIST1H3D, HIST1H2AD, HIST1H2BF, HIST1H4E, HIST1H2BG, HIST1H2AE, HIST1H3E, HIST1H1D, HIST1H4F, HIST1H4G, HIST1H3F, HIST1H2BH, HIST1H3G, HIST1H2BI, HIST1H4H	rs9379833-?	NR	7E-13		0.0199379	[0.015-0.025] unit increase	Affymetrix [25921788] (imputed)	N
784	chr6	26207174	26207175	rs9379833	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	6p22.2	HIST1H4E, HIST1H2BG	rs9379833-?	NR	2E-55		0.060585186	[0.053-0.068] unit decrease	Illumina [27896057] (imputed)	N
784	chr6	26211145	26211146	rs9358912	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Sex hormone-binding globulin levels	389,354 European ancestry individuals	NA	6p22.2		rs9358912-G	0.73	2E-15		0.017	nmol/L decrease	NR [NR] (imputed)	N
784	chr6	26211145	26211146	rs9358912	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	6p22.2		rs9358912-G	0.73	7E-26				NR [NR] (imputed)	N
784	chr6	26211145	26211146	rs9358912	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	High density lipoprotein cholesterol levels	392,965 European ancestry individuals	NA	6p22.2		rs9358912-G	0.73	7E-8		0.011	mmol/L decrease	NR [NR] (imputed)	N
784	chr6	26211145	26211146	rs9358912	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	6p22.2		rs9358912-G	0.73	5E-39		0.022	% increase	NR [NR] (imputed)	N
784	chr6	26211145	26211146	rs9358912	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	67,764 individuals	NA	6p22.2	NR	rs9358912-?		3E-8				NR [8377093]	N
784	chr6	26211145	26211146	rs9358912	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	6p22.2	NR	rs9358912-G	0.6514	2E-8		0.0249	[0.016-0.034] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
784	chr6	26211145	26211146	rs9358912	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	6p22.2	NR	rs9358912-T	0.2702	1E-18		0.024580788	[0.019-0.03] unit decrease	Affymetrix [10549349] (imputed)	N
785	chr6	26218919	26218920	rs806790	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6p22.2	HIST1H2AE	rs806790-A	NR	4E-13		0.0229858	[0.017-0.029] unit decrease	Affymetrix [321114] (imputed)	N
785	chr6	26218919	26218920	rs806790	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.2	HIST1H2AE	rs806790-A	NR	3E-37		0.0367251	[0.031-0.042] unit decrease	Affymetrix [321016] (imputed)	N
785	chr6	26218919	26218920	rs806790	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p22.2	HIST1H2AE	rs806790-A	NR	2E-22		0.0306832	[0.025-0.037] unit decrease	Affymetrix [323123] (imputed)	N
785	chr6	26223581	26223582	rs78901806	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	6p22.2		rs78901806-?	NR	5E-8				Affymetrix [NR] (imputed)	N
785	chr6	26233386	26233387	rs10946808	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	6p22.2	NR	rs10946808-?	NR	2E-9		0.04372059	[0.03-0.058] unit decrease	Illumina [34656550] (imputed)	N
785	chr6	26233386	26233387	rs10946808	29899525	Klimentidis YC	2018-06-13	Int J Obes (Lond)	Genome-wide association study of habitual physical activity in over 377,000 UK Biobank participants identifies multiple variants including CADM2 and APOE.	Strenuous sports or other exercises	124,842 European ancestry active cases, 225,650 European ancestry inactive controls	NA	6p22.2	HIST1H1D	rs10946808-?	0.27	1E-9		1.0309278		Affymetrix [11800000] (imputed)	N
785	chr6	26233386	26233387	rs10946808	19343178	Soranzo N	2009-04-03	PLoS Genet	Meta-analysis of genome-wide scans for human adult stature identifies novel Loci and associations with measures of skeletal frame size.	Height	12,611 European ancestry individuals	7,187 European ancestry individuals	6p22.2	HIST1H1D	rs10946808-?	0.43	6E-12		0.07	[0.04-0.10] s.d. increase	Illumina [229216]	N
785	chr6	26233386	26233387	rs10946808	18391951	Gudbjartsson DF	2008-04-06	Nat Genet	Many sequence variants affecting diversity of adult human height.	Height	30,968 European ancestry individuals	8,541 European ancestry individuals	6p22.2	Histone class 1, Butyrophilin genes	rs10946808-A	0.7	6E-10		5.6	[3.84-7.36] % s.d. increase	Affymetrix, Illumina [up to 304226]	N
785	chr6	26233386	26233387	rs10946808	18391950	Lettre G	2008-04-06	Nat Genet	Identification of ten loci associated with height highlights new biological pathways in human growth.	Height	15,821 European ancestry individuals	Up to 17,801 European ancestry individuals	6p22.2	HIST1H1D	rs10946808-G	0.28	4E-17		0.36	[0.26-0.46] cm decrease	Affymetrix, Illumina [2260683] (imputed)	N
785	chr6	26239403	26239404	rs9358913	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	6p22.2	HIST1H1D, HIST1H2AD, HIST1H2AE, HIST1H2BD, HIST1H2BE, HIST1H2BF, HIST1H2BG, HIST1H2BH, HIST1H2BI, HIST1H3D, HIST1H3E, HIST1H3F, HIST1H3G, HIST1H4D, HIST1H4E, HIST1H4F, HIST1H4G, HIST1H4H	rs9358913-G	0.262178	5E-29		0.03146	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
785	chr6	26239403	26239404	rs9358913	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	6p22.2	HIST1H1D, HIST1H2AD, HIST1H2AE, HIST1H2BD, HIST1H2BE, HIST1H2BF, HIST1H2BG, HIST1H2BH, HIST1H2BI, HIST1H3D, HIST1H3E, HIST1H3F, HIST1H3G, HIST1H4D, HIST1H4E, HIST1H4F, HIST1H4G, HIST1H4H	rs9358913-G	0.262178	1E-48	(females)	0.05275	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
785	chr6	26239403	26239404	rs9358913	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	6p22.2	HIST1H1D, HIST1H2AD, HIST1H2AE, HIST1H2BD, HIST1H2BE, HIST1H2BF, HIST1H2BG, HIST1H2BH, HIST1H2BI, HIST1H3D, HIST1H3E, HIST1H3F, HIST1H3G, HIST1H4D, HIST1H4E, HIST1H4F, HIST1H4G, HIST1H4H	rs9358913-G	0.262178	2E-46	(females)	0.05168	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
785	chr6	26239403	26239404	rs9358913	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	6p22.2	HIST1H1D, HIST1H2AD, HIST1H2AE, HIST1H2BD, HIST1H2BE, HIST1H2BF, HIST1H2BG, HIST1H2BH, HIST1H2BI, HIST1H3D, HIST1H3E, HIST1H3F, HIST1H3G, HIST1H4D, HIST1H4E, HIST1H4F, HIST1H4G, HIST1H4H	rs9358913-G	0.262178	1E-26		0.02942	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
785	chr6	26242356	26242357	rs182422732	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-10 levels	7,681 Finnish ancestry individuals	NA	6p22.2	NR	rs182422732-G		6E-6		0.3255	[0.18-0.47] SD units decrease	NR [10700000] (imputed)	N
785	chr6	26247197	26247198	rs41266821	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p22.2	HIST1H4G	rs41266821-G		6E-44		0.047	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
785	chr6	26248839	26248840	rs78545713	28334935	Raffield LM	2017-05-15	Hum Mol Genet	Genome-wide association study of iron traits and relation to diabetes in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL): potential genomic intersection of iron and glucose regulation?	Iron status biomarkers (total iron binding capacity)	12,586 Hispanic/Latino individuals	NA	6p22.2	HIST1H4G, HIST1H3F	rs78545713-A	NR	2E-8		0.153	[0.1-0.21] unit increase	Illumina [27700000] (imputed)	N
785	chr6	26254270	26254271	rs806785	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p22.2	HIST1H2BH	rs806785-A	NR	1E-9		0.0174325	[0.012-0.023] unit increase	Affymetrix [321114] (imputed)	N
785	chr6	26255450	26255451	rs6935954	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.2	HIST1H2BH	rs6935954-A	NR	5E-24		0.0286974	[0.023-0.034] unit increase	Affymetrix [321016] (imputed)	N
785	chr6	26255450	26255451	rs6935954	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	6p22.2		rs6935954-A	0.421	8E-12		0.014	[0.01-0.018] unit increase	Affymetrix [up to 90000000] (imputed)	N
785	chr6	26255738	26255739	rs113507773	28334935	Raffield LM	2017-05-15	Hum Mol Genet	Genome-wide association study of iron traits and relation to diabetes in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL): potential genomic intersection of iron and glucose regulation?	Iron status biomarkers (transferrin saturation)	12,589 Hispanic/Latino individuals	NA	6p22.2	HIST1H2BH, HIST1H3G	rs113507773-G	NR	2E-12		0.157	[0.11-0.2] unit decrease	Illumina [27700000] (imputed)	N
785	chr6	26255738	26255739	rs113507773	28334935	Raffield LM	2017-05-15	Hum Mol Genet	Genome-wide association study of iron traits and relation to diabetes in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL): potential genomic intersection of iron and glucose regulation?	Iron status biomarkers (iron levels)	12,580 Hispanic/Latino individuals	NA	6p22.2	HIST1H2BH, HIST1H3G	rs113507773-G	NR	4E-8		0.199	[0.13-0.27] unit decrease	Illumina [27700000] (imputed)	N
785	chr6	26256525	26256526	rs809871	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	6p22.2	HIST1H2BE, HIST1H2BH	rs809871-C	0.424338	2E-8		0.017195	[0.011-0.023] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
785	chr6	26256525	26256526	rs809871	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	6p22.2	HIST1H2BE, HIST1H2BH	rs809871-C	0.418129	2E-6		0.012537	[0.0074-0.0176] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
785	chr6	26258610	26258611	rs114704433	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (immunosuppressants)	3,483 East Asian ancestry cases, 175,243 East Asian ancestry controls	NA	6p22.2		rs114704433-C	0.068142998	2E-8		0.2789333	[0.18-0.38] unit decrease	Illumina [13134967] (imputed)	N
785	chr6	26259806	26259807	rs3999543	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Worry too long after an embarrassing experience	367,725 European ancestry individuals	NA	6p22.2	HFE	rs3999543-A	0.305513	2E-8		5.65	z score increase	NR [10847151] (imputed)	N
785	chr6	26260069	26260070	rs4476815	26584805	Dorajoo R	2015-11-19	Genes Nutr	A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.	Plasma omega-6 polyunsaturated fatty acid levels (linoleic acid)	717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls	NA	6p22.2	NR	rs4476815-G	0.9452	4E-7		0.0537	[0.033-0.074] unit decrease	Illumina [up to 1980188] (imputed)	N
785	chr6	26261526	26261527	rs76858924	28334935	Raffield LM	2017-05-15	Hum Mol Genet	Genome-wide association study of iron traits and relation to diabetes in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL): potential genomic intersection of iron and glucose regulation?	Iron status biomarkers (ferritin levels)	12,375 Hispanic/Latino individuals	NA	6p22.2	HIST1H2BH, HIST1H3G	rs76858924-C	NR	2E-7		0.065	[0.04-0.09] unit decrease	Illumina [27700000] (imputed)	N
785	chr6	26266310	26266311	rs55706012	34002096	Mullins N	2021-05-17	Nat Genet	Genome-wide association study of more than 40,000 bipolar disorder cases provides new insights into the underlying biology.	Bipolar I disorder	25,060 European ancestry cases, 449,978 European ancestry controls	NA	6p22.2	NR	rs55706012-A	0.923	1E-9		1.14843	[1.1-1.19]	Affymetrix, Illumina [7549318] (imputed)	N
785	chr6	26267754	26267755	rs7773004	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in IDL	115,082 European ancestry individuals	NA	6p22.2		rs7773004-A	0.502717	2E-10		0.0255165	[0.018-0.033] unit decrease	NR [11722792] (imputed)	N
785	chr6	26267754	26267755	rs7773004	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Remnant cholesterol (non-HDL, non-LDL -cholesterol)	115,082 European ancestry individuals	NA	6p22.2		rs7773004-A	0.502717	5E-8		0.0223975	[0.014-0.03] unit decrease	NR [11722792] (imputed)	N
785	chr6	26267754	26267755	rs7773004	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of apolipoprotein B to apolipoprotein A1 levels	115,082 European ancestry individuals	NA	6p22.2		rs7773004-A	0.502717	3E-8		0.0225482	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
785	chr6	26267754	26267755	rs7773004	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in IDL	115,082 European ancestry individuals	NA	6p22.2		rs7773004-A	0.502717	1E-9		0.0242573	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
785	chr6	26267754	26267755	rs7773004	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6p22.2		rs7773004-A	0.502717	5E-12		0.0282981	[0.02-0.036] unit decrease	NR [11722792] (imputed)	N
785	chr6	26267754	26267755	rs7773004	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	6p22.2		rs7773004-A	0.502717	5E-8		0.0209795	[0.013-0.029] unit decrease	NR [11722792] (imputed)	N
785	chr6	26267754	26267755	rs7773004	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in IDL	115,082 European ancestry individuals	NA	6p22.2		rs7773004-A	0.502717	5E-13		0.0288873	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
785	chr6	26267754	26267755	rs7773004	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of IDL particles	115,082 European ancestry individuals	NA	6p22.2		rs7773004-A	0.502717	2E-9		0.024509	[0.016-0.033] unit decrease	NR [11722792] (imputed)	N
785	chr6	26267754	26267755	rs7773004	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium VLDL	115,082 European ancestry individuals	NA	6p22.2		rs7773004-A	0.502717	4E-10		0.0256749	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
785	chr6	26267754	26267755	rs7773004	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in IDL	115,082 European ancestry individuals	NA	6p22.2		rs7773004-A	0.502717	7E-11		0.0260113	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
785	chr6	26267754	26267755	rs7773004	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	6p22.2		rs7773004-A	0.502717	6E-9		0.0239436	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
785	chr6	26267754	26267755	rs7773004	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in IDL	115,082 European ancestry individuals	NA	6p22.2		rs7773004-A	0.502717	2E-11		0.0269132	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
785	chr6	26267754	26267755	rs7773004	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Varicose veins	22,037 European ancestry cases, 437,665 European ancestry controls, 474 East Asian ancestry cases, 178,252 East Asian ancestry controls	NA	6p22.2		rs7773004-G	NR	1E-14		0.0826	[0.062-0.104] unit decrease	Affymetrix, Illumina [25842955] (imputed)	N
785	chr6	26267754	26267755	rs7773004	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	6p22.2		rs7773004-?	NR	5E-8				Affymetrix [NR] (imputed)	N
785	chr6	26267754	26267755	rs7773004	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6p22.2	HIST1H3G	rs7773004-G	NR	3E-24		0.0313838	[0.025-0.037] unit decrease	Affymetrix [321114] (imputed)	N
785	chr6	26267754	26267755	rs7773004	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p22.2	HIST1H3G	rs7773004-G	NR	1E-14		0.0237023	[0.018-0.03] unit decrease	Affymetrix [323123] (imputed)	N
785	chr6	26267754	26267755	rs7773004	30998689	Shadrina AS	2019-04-18	PLoS Genet	Varicose veins of lower extremities: Insights from the first large-scale genetic study.	Varicose veins	10,861 British ancestry cases, 397,594 British ancestry controls	NA	6p22.2		rs7773004-G	0.494029	1E-14		0.0027123	[0.002-0.0034] unit decrease	Affymetrix [10829469] (imputed)	N
785	chr6	26267754	26267755	rs7773004	30566020	Fukaya E	2018-12-01	Circulation	Clinical and Genetic Determinants of Varicose Veins.	Varicose veins	9,577 British ancestry cases, 327,959 British ancestry controls	NA	6p22.2	NR	rs7773004-G	0.49	2E-14		0.113	[0.084-0.142] unit decrease	Affymetrix [10972371] (imputed)	N
785	chr6	26267754	26267755	rs7773004	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in non-smokers	77,113 European ancestry women, 47,319 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	6p22.2	HIST1H3G, HIST1H2BH	rs7773004-A	0.4885	9E-8		0.0203	[0.013-0.028] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
785	chr6	26267754	26267755	rs7773004	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	6p22.2	HIST1H3G, HIST1H2BH	rs7773004-A	0.4885	1E-8	(men)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
785	chr6	26267754	26267755	rs7773004	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	6p22.2	HIST1H3G, HIST1H2BH	rs7773004-A	0.4885	1E-10				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
785	chr6	26267754	26267755	rs7773004	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	6p22.2	HIST1H3G, HIST1H2BH	rs7773004-A	0.4885	5E-11		0.0225	[0.016-0.029] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
785	chr6	26267754	26267755	rs7773004	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	6p22.2	HIST1H3G, HIST1H2BH	rs7773004-A	0.4885	4E-9	(men)	0.0291	[0.019-0.039] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
785	chr6	26267754	26267755	rs7773004	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p22.2	HIST1H3G, HIST1H2BH	rs7773004-A	0.5045	2E-15	(EA)	0.0263	[0.02-0.033] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
785	chr6	26267754	26267755	rs7773004	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p22.2	HIST1H3G, HIST1H2BH	rs7773004-A	0.5045	2E-12	(EA, men)	0.0334	[0.024-0.043] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
785	chr6	26267754	26267755	rs7773004	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p22.2	HIST1H3G, HIST1H2BH	rs7773004-A	0.5045	1E-6	(EA,women)	0.0208	[0.012-0.029] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
785	chr6	26272547	26272548	rs61747867	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p22.2	HIST1H1D, HIST1H2AD, HIST1H2AE, HIST1H2BE, HIST1H2BF, HIST1H2BG, HIST1H2BH, HIST1H2BI, HIST1H3D, HIST1H3E, HIST1H3F, HIST1H3G, HIST1H4D, HIST1H4E, HIST1H4F, HIST1H4G, HIST1H4H	rs61747867-T		2E-9		1.08	[1.05-1.11]	Affymetrix, Illumina [NR]	N
785	chr6	26272547	26272548	rs61747867	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	6p22.2	NR	rs61747867-T	NR	2E-7		1.07	[NR]	Illumina [7158791] (imputed)	N
785	chr6	26272828	26272829	rs9393691	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6p22.2	HIST1H2APS4	rs9393691-C	NR	2E-13		0.0236808	[0.017-0.03] unit decrease	Affymetrix [321114] (imputed)	N
785	chr6	26272828	26272829	rs9393691	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p22.2	HIST1H2APS4	rs9393691-C	NR	6E-19		0.0283497	[0.022-0.035] unit decrease	Affymetrix [323123] (imputed)	N
785	chr6	26276649	26276650	rs9393692	27046643	Davies G	2016-04-05	Mol Psychiatry	Genome-wide association study of cognitive functions and educational attainment in UK Biobank (N=112 151).	Educational attainment	111,114 European ancestry individuals	NA	6p22.2	Intergenic	rs9393692-?	NR	3E-11		0.0282188	[NR] unit increase	Affymetrix [~ 17300000] (imputed)	N
785	chr6	26285682	26285683	rs2393593	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.2	HIST1H4H	rs2393593-T	NR	1E-30		0.0323087	[0.027-0.038] unit increase	Affymetrix [321016] (imputed)	N
785	chr6	26285866	26285867	rs3999544	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p22.2	HIST1H4H	rs3999544-C	NR	6E-15		0.0238952	[0.018-0.03] unit increase	Affymetrix [323123] (imputed)	N
785	chr6	26285866	26285867	rs3999544	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	6p22.2	HIST1H4H	rs3999544-C	0.438659584	1E-10		1.0787952	[1.054114572-1.104053769]	Illumina [10439017] (imputed)	N
785	chr6	26286148	26286149	rs34916901	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	6p22.2	HIST1H4H	rs34916901-T	0.5116	3E-10		0.002	[0.0014-0.0026] unit increase	Affymetrix [15275733] (imputed)	N
785	chr6	26289121	26289122	rs6916289	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	6p22.2	NR	rs6916289-A	0.459245	1E-11		0.04809967	[0.034-0.062] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
785	chr6	26293013	26293014	rs6908402	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Polyunsaturated fatty acid levels	115,006 European ancestry individuals	NA	6p22.2		rs6908402-A	0.624515	2E-8		0.0232182	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
785	chr6	26293013	26293014	rs6908402	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Linoleic acid levels	115,006 European ancestry individuals	NA	6p22.2		rs6908402-A	0.624515	4E-8		0.0230551	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
785	chr6	26293013	26293014	rs6908402	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.2	HIST1H4H	rs6908402-T	NR	5E-36		0.0364655	[0.031-0.042] unit decrease	Affymetrix [321016] (imputed)	N
785	chr6	26293337	26293338	rs7746807	28039263	Wheeler HE	2016-12-30	Clin Cancer Res	Variants in WFS1 and Other Mendelian Deafness Genes Are Associated with Cisplatin-Associated Ototoxicity.	Cisplatin-induced ototoxicity	511 European ancestry testicular cancer survivor individuals	238 children	6p22.2	intergenic	rs7746807-A	NR	8E-6		4.46	z score increase	Illumina [5060354] (imputed)	N
785	chr6	26295925	26295926	rs9393698	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.2	HIST1H4H	rs9393698-A	NR	1E-28		0.0359966	[0.03-0.042] unit decrease	Affymetrix [321016] (imputed)	N
785	chr6	26303318	26303319	rs9357004	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (father's age at death or father's attained age)	up to 699,000 European ancestry individuals	NA	6p22.2	NR	rs9357004-G		4E-6				Illumina [458865]	N
785	chr6	26306491	26306492	rs113549253	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Endometrial cancer (MTAG)	909 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.2	Intergenic	rs113549253-?		8E-6		1.16	[1.09-1.24]	Illumina [7645193] (imputed)	N
785	chr6	26306491	26306492	rs113549253	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Endometrial cancer	909 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.2	Intergenic	rs113549253-?		4E-6		2.86	[1.83-4.47]	Illumina [7645193] (imputed)	N
785	chr6	26313347	26313348	rs6923139	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	6p22.2	NR	rs6923139-T	0.112342146590384	3E-13		0.014254141	[0.01-0.018] unit decrease	NR [NR]	N
785	chr6	26314232	26314233	rs1883215	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	6p22.2	HIST1H3PS1	rs1883215-C	NR	6E-9		0.027172053	[0.018-0.036] unit increase	Affymetrix [NR]	N
785	chr6	26316981	26316982	rs11966360	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p22.2		rs11966360-A	0.851171	1E-8		0.0324451	[0.021-0.044] unit decrease	NR [11722792] (imputed)	N
785	chr6	26318261	26318262	rs35162296	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	6p22.2	HIST1H4H	rs35162296-C	0.894147	1E-18		0.0200619	[0.016-0.025] unit decrease	Affymetrix [12370749]	N
785	chr6	26318902	26318903	rs9467703	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6p22.2	HIST1H3PS1	rs9467703-A	NR	4E-18		0.0275964	[0.021-0.034] unit increase	Affymetrix [321114] (imputed)	N
785	chr6	26319485	26319486	rs9467704	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	6p22.2	BTN3A1	rs9467704-?	NR	2E-10		0.0254	[0.018-0.032] unit decrease	Affymetrix [5701386] (imputed)	N
785	chr6	26319587	26319588	rs766406	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	6p22.2		rs766406-T	0.6194	1E-7		37.519226	z score increase	NR [6814003]	N
785	chr6	26319587	26319588	rs766406	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	6p22.2		rs766406-G	0.361	4E-17		0.01	[0.008-0.012] unit increase	NR [NR] (imputed)	N
785	chr6	26319587	26319588	rs766406	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	6p22.2	HIST1H4H, BTN3A2	rs766406-T	0.65	6E-14				NR [> 9500000] (imputed)	N
785	chr6	26319587	26319588	rs766406	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	6p22.2	HIST1H4H, BTN3A2	rs766406-G	0.3591	7E-10		1.0238807		Affymetrix [11880941] (imputed)	N
785	chr6	26319587	26319588	rs766406	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6p22.2	Intergenic	rs766406-T	0.6408	2E-23	(MTAG)	0.0136	[0.011-0.016] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
785	chr6	26319587	26319588	rs766406	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p22.2	HIST1H3PS1	rs766406-T	0.6365	2E-12		0.0495	[0.036-0.063] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
785	chr6	26323504	26323505	rs11756673	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking cessation (MTAG)	up to 820,192 European ancestry individuals	NA	6p22.2	NR	rs11756673-G	0.627	2E-13		0.0117212	[0.0086-0.0148] unit decrease	NR [9732723] (imputed)	N
785	chr6	26325462	26325463	rs3778279	31272903	Sunadome H	2019-07-01	Allergol Int	Correlation between eosinophil count, its genetic background and body mass index: The Nagahama Study.	Eosinophil counts	4,650 East Asian ancestry individuals	NA	6p22.2	NR	rs3778279-T	0.15	3E-8		0.1557	NR unit increase	Illumina [103680] (imputed)	N
785	chr6	26325887	26325888	rs2179152	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6p22.2		rs2179152-T	0.3673	2E-19		0.0131	[0.01-0.016] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
785	chr6	26325887	26325888	rs2179152	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	6p22.2	NR	rs2179152-T	0.3722	9E-9		0.013233004	NR unit decrease	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
785	chr6	26327080	26327081	rs6932584	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (glucocorticoids)	17,352 European ancestry cases, 188,348 European ancestry controls, 13,102 East Asian ancestry cases, 165,624 East Asian ancestry controls	NA	6p22.2		rs6932584-C	NR	1E-10		0.0629	[0.044-0.082] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
785	chr6	26327080	26327081	rs6932584	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (adrenergics, inhalants)	28,880 European ancestry cases, 147,565 European ancestry controls, 5,880 East Asian ancestry cases, 172,846 East Asian ancestry controls	NA	6p22.2		rs6932584-C	NR	1E-10		0.0556	[0.039-0.072] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
785	chr6	26327813	26327814	rs6917995	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.2	HIST1H3PS1	rs6917995-C	NR	4E-8		0.0171446	[0.011-0.023] unit decrease	Affymetrix [127266] (imputed)	N
785	chr6	26327813	26327814	rs6917995	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p22.2	HIST1H3PS1	rs6917995-C	NR	4E-9		0.018285	[0.012-0.024] unit decrease	Affymetrix [323858] (imputed)	N
785	chr6	26327904	26327905	rs9467707	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.2	HIST1H3PS1	rs9467707-C	NR	5E-11		6.563	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
785	chr6	26327904	26327905	rs9467707	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling guilty	373,380 European ancestry individuals	NA	6p22.2	SCGN	rs9467707-C	0.128474	8E-9		5.76	z score decrease	NR [10847151] (imputed)	N
785	chr6	26328352	26328353	rs34107459	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	6p22.2	NR	rs34107459-C	0.06	1E-11		1.22	[1.16-1.28]	Illumina [8468885] (imputed)	N
785	chr6	26328352	26328353	rs34107459	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite modules (eigenmetabolites) in chronic kidney disease	1,221 cases	406 cases	6p22.2	BTN3A1	rs34107459-C	0.09	9E-11	(3-(4-hydroxyphenyl)lactate, 4-hydroxyphenylpyruvate, indolelactate, phenyllactate (PLA), X-16071)	0.01	[0.0061-0.0139] unit decrease	Illumina [7750367] (imputed)	N
785	chr6	26328352	26328353	rs34107459	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Squamous cell lung carcinoma	7,426 European ancestry cases, 55,627 European ancestry controls	NA	6p22.2	HIST1H4H, BTN3A2	rs34107459-C	0.073714125	1E-10		1.2576606	[1.172474838-1.349035565]	Illumina [10439017] (imputed)	N
785	chr6	26328364	26328365	rs1155207	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.2	HIST1H3PS1	rs1155207-G	NR	3E-22		0.0273654	[0.022-0.033] unit decrease	Affymetrix [321016] (imputed)	N
785	chr6	26328622	26328622	rs11435482	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.2	HIST1H3PS1	rs11435482-TA	NR	6E-11		0.0316683	[0.022-0.041] unit decrease	Affymetrix [323858] (imputed)	N
785	chr6	26332604	26332605	rs9467711	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p22.2		rs9467711-A	0.879	1E-33				Affymetrix [10369434] (imputed)	N
785	chr6	26332604	26332605	rs9467711	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p22.2		rs9467711-A	0.879	1E-28				Affymetrix [10369434] (imputed)	N
785	chr6	26332604	26332605	rs9467711	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	6p22.2	HIST1H3PS1	rs9467711-A	NR	2E-22	(EA)	1.195	[1.16-1.23]	Illumina [6627481] (imputed)	N
785	chr6	26332604	26332605	rs9467711	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p22.2	ABT1, BTN1A1, BTN2A1, BTN2A2, BTN2A3P, BTN3A1, BTN3A2, BTN3A3, GUSBP2, HCG11, HFE, HIST1H1A, HIST1H1C, HIST1H1D, HIST1H1E, HIST1H1T, HIST1H2AB, HIST1H2AC, HIST1H2AD, HIST1H2AE, HIST1H2AG, HIST1H2AH, HIST1H2BB, HIST1H2BC, HIST1H2BD, HIST1H2BE, HIST1H2BF, HIST1H2BG, HIST1H2BH, HIST1H2BI, HIST1H2BJ, HIST1H2BK, HIST1H3A, HIST1H3B, HIST1H3C, HIST1H3D, HIST1H3E, HIST1H3F, HIST1H3G, HIST1H4A, HIST1H4B, HIST1H4C, HIST1H4D, HIST1H4E, HIST1H4F, HIST1H4G, HIST1H4H, HIST1H4I, HMGN4, LINC00240, LOC100270746, LOC285819, MIR3143, POM121L2, PRSS16, SLC17A1, SLC17A2, SLC17A3, SLC17A4, TRIM38, ZNF322	rs9467711-A		3E-19		1.16	[1.12-1.19]	Affymetrix, Illumina [NR]	N
785	chr6	26336571	26336572	rs34158769	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Hip circumference variance	346,781 European ancestry individuals	NA	6p22.2	BTN3A2	rs34158769-?	NR	5E-15				NR [5554549] (imputed)	N
785	chr6	26336571	26336572	rs34158769	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Hip circumference	346,781 European ancestry individuals	NA	6p22.2	BTN3A2	rs34158769-?	NR	4E-13				NR [5554549] (imputed)	N
785	chr6	26336571	26336572	rs34158769	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in ever smokers	23,223 European ancestry cases,  16,964 European ancestry controls	NA	6p22.2	HIST1H4H, BTN3A2	rs34158769-A	0.072601638	1E-7		1.1614014	[1.098845322-1.227518764]	Illumina [10439017] (imputed)	N
785	chr6	26336695	26336696	rs9366651	33128006	Timmins IR	2020-10-30	Commun Biol	Genome-wide association study of self-reported walking pace suggests beneficial effects of brisk walking on health and survival.	Walking pace	450,967 European ancestry individuals	NA	6p22.2	BTN3A2	rs9366651-G	NR	2E-13		0.00928795	[0.0068-0.0118] unit decrease	Affymetrix [10061374] (imputed)	N
785	chr6	26336695	26336696	rs9366651	31235808	Shungin D	2019-06-24	Nat Commun	Genome-wide analysis of dental caries and periodontitis combining clinical and self-reported data.	Number of decayed, missing and filled tooth surfaces or use of dentures	14,976 European ancestry individuals with decayed, missing or filled tooth surface measurement, 11,816 Hispanic/Latino individuals with decayed, missing or filled tooth surface measurement, 77,714 European ancestry dentures cases, 383,317 European ancestry controls	NA	6p22.2	HLA	rs9366651-T	0.51	3E-28		0.029	[0.024-0.034] unit decrease	Affymetrix, Illumina [~ 8900000] (imputed)	N
785	chr6	26336695	26336696	rs9366651	31235808	Shungin D	2019-06-24	Nat Commun	Genome-wide analysis of dental caries and periodontitis combining clinical and self-reported data.	Dentures	77,714 European ancestry cases, 383,317 European ancestry controls	NA	6p22.2	HLA	rs9366651-T	0.51	4E-26		0.058	[0.047-0.069] unit decrease	Affymetrix [at least 8900000] (imputed)	N
785	chr6	26338055	26338056	rs4412193	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6p22.2	NR	rs4412193-?	NR	3E-17				Affymetrix [~ 8270000] (imputed)	N
785	chr6	26338055	26338056	rs4412193	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (mother's age at death or mother's attained age)	up to 699,000 individuals	NA	6p22.2	NR	rs4412193-A		1E-7				Illumina [458525]	N
785	chr6	26338256	26338257	rs4413606	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	6p22.2	NR	rs4413606-G	0.622	1E-12		0.0107808	[0.0078-0.0138] unit increase	NR [9732723] (imputed)	N
785	chr6	26338537	26338538	rs2393649	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	154,355 East Asian ancestry individuals	NA	6p22.2		rs2393649-G	0.868213	2E-8		0.0283238	[0.018-0.038] unit increase	Illumina [13479091] (imputed)	N
785	chr6	26339130	26339131	rs35942569	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	6p22.2	BTN3A2	rs35942569-A	0.9052	1E-19		0.0614	[0.048-0.075] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
785	chr6	26339130	26339131	rs35942569	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	6p22.2	NR	rs35942569-A	0.0883	4E-8	(women)	0.0569	[0.037-0.077] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
785	chr6	26340784	26340785	rs9467714	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.2	RNU6-1259P	rs9467714-A	NR	3E-9		0.026901	[0.018-0.036] unit decrease	Affymetrix [127266] (imputed)	N
785	chr6	26340784	26340785	rs9467714	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.2	ENSG00000252399	rs9467714-A	NR	9E-11		6.481	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
785	chr6	26340871	26340872	rs55964643	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6p22.2		rs55964643-G	0.496769	2E-11		0.026967	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
785	chr6	26340871	26340872	rs55964643	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	6p22.2		rs55964643-G	0.496591	1E-8		0.023301	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
785	chr6	26340871	26340872	rs55964643	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p22.2		rs55964643-G	0.496769	7E-13		0.0293797	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
785	chr6	26340871	26340872	rs55964643	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6p22.2		rs55964643-G	0.496769	3E-12		0.0284656	[0.02-0.036] unit decrease	NR [11722792] (imputed)	N
785	chr6	26340871	26340872	rs55964643	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6p22.2		rs55964643-G	0.496769	5E-11		0.0262612	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
785	chr6	26340871	26340872	rs55964643	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	6p22.2		rs55964643-G	0.496769	1E-10		0.0268698	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
785	chr6	26340871	26340872	rs55964643	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	6p22.2		rs55964643-G	0.496769	3E-10		0.0259485	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
785	chr6	26340871	26340872	rs55964643	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	6p22.2		rs55964643-G	0.496769	2E-11		0.0273709	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
785	chr6	26340871	26340872	rs55964643	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p22.2		rs55964643-G	0.496769	1E-13		0.0299868	[0.022-0.038] unit increase	NR [11722792] (imputed)	N
785	chr6	26340871	26340872	rs55964643	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6p22.2		rs55964643-G	0.496769	5E-10		0.0253546	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
785	chr6	26340871	26340872	rs55964643	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p22.2		rs55964643-G	0.496769	3E-14		0.0307064	[0.023-0.039] unit increase	NR [11722792] (imputed)	N
785	chr6	26340871	26340872	rs55964643	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6p22.2		rs55964643-G	0.496769	2E-10		0.0258975	[0.018-0.034] unit increase	NR [11722792] (imputed)	N
785	chr6	26340871	26340872	rs55964643	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6p22.2		rs55964643-G	0.496769	3E-11		0.0269017	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
785	chr6	26340871	26340872	rs55964643	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	6p22.2		rs55964643-G	0.496769	9E-10		0.0246474	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
785	chr6	26340871	26340872	rs55964643	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6p22.2		rs55964643-G	0.496769	8E-11		0.0258625	[0.018-0.034] unit increase	NR [11722792] (imputed)	N
785	chr6	26340871	26340872	rs55964643	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	6p22.2		rs55964643-G	0.496591	1E-9		0.0245668	[0.017-0.032] unit increase	NR [11722792] (imputed)	N
785	chr6	26340871	26340872	rs55964643	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6p22.2		rs55964643-G	0.496769	2E-10		0.0251947	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
785	chr6	26340871	26340872	rs55964643	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6p22.2		rs55964643-G	0.496769	2E-11		0.0269562	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
785	chr6	26340871	26340872	rs55964643	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	6p22.2		rs55964643-G	0.496591	3E-9		0.0240772	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
785	chr6	26340871	26340872	rs55964643	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p22.2		rs55964643-G	0.496769	6E-12		0.0283278	[0.02-0.036] unit increase	NR [11722792] (imputed)	N
785	chr6	26340871	26340872	rs55964643	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6p22.2		rs55964643-G	0.496769	7E-11		0.0259582	[0.018-0.034] unit increase	NR [11722792] (imputed)	N
785	chr6	26340871	26340872	rs55964643	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	6p22.2		rs55964643-G	0.496769	1E-10		0.0265601	[0.018-0.035] unit increase	NR [11722792] (imputed)	N
785	chr6	26341029	26341030	rs9358928	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6p22.2	RNU6-1259P	rs9358928-C	NR	1E-8		0.0176704	[0.012-0.024] unit decrease	Affymetrix [321114] (imputed)	N
785	chr6	26341300	26341301	rs9467715	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Diastolic blood pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	6p22.2	HLA	rs9467715-C	0.266709019	5E-7		0.1613	[0.099-0.224] unit increase	Affymetrix [~ 9800000] (imputed)	N
785	chr6	26342748	26342749	rs4711107	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	6p22.2	NR	rs4711107-C	0.290173675249321	3E-8		0.008678477	[0.0056-0.0118] unit decrease	NR [NR]	N
785	chr6	26342748	26342749	rs4711107	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	6p22.2	ENSG00000252399	rs4711107-T	NR	2E-8		0.018694583	[0.012-0.025] unit decrease	Affymetrix [NR]	N
785	chr6	26343056	26343057	rs9379850	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.2	RNU6-1259P	rs9379850-G	NR	5E-9		0.0240239	[0.016-0.032] unit decrease	Affymetrix [323858] (imputed)	N
785	chr6	26343056	26343057	rs9379850	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.2	RNU6-1259P	rs9379850-G	NR	3E-9		0.0243193	[0.016-0.032] unit decrease	Affymetrix [127266] (imputed)	N
785	chr6	26343056	26343057	rs9379850	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.2	ENSG00000252399	rs9379850-C	NR	4E-10		6.254	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
785	chr6	26343056	26343057	rs9379850	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	6p22.2	ENSG00000252399	rs9379850-C	NR	3E-10		0.025669826	[0.018-0.034] unit decrease	Affymetrix [NR]	N
786	chr6	26354463	26354464	rs36085954	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Liver iron content	32,858 European ancestry individuals	NA	6p22.2	BTN3A2	rs36085954-?	NR	8E-95	(conditional)	0.224	NR mg/g increase	Affymetrix [9390170] (imputed)	N
786	chr6	26354463	26354464	rs36085954	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6p22.2	RNU6-1259P	rs36085954-A	NR	7E-11		0.0283609	[0.02-0.037] unit increase	Affymetrix [321114] (imputed)	N
786	chr6	26356450	26356451	rs72836474	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls, 49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	6p22.2		rs72836474-T	NR	6E-11		0.1376	[0.096-0.179] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
786	chr6	26357233	26357234	rs116018523	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	6p22.2	RNU6-1259P	rs116018523-T	0.8831	6E-6		0.0488	[0.028-0.07] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
786	chr6	26364055	26364056	rs10946817	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	67,764 individuals	NA	6p22.2	NR	rs10946817-?		2E-11				NR [8377093]	N
786	chr6	26364055	26364056	rs10946817	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Bipolar disorder (MTAG)	65,682 individuals	NA	6p22.2	NR	rs10946817-?		1E-9				NR [520857]	N
786	chr6	26365678	26365679	rs58825580	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder	16,823 European ancestry cases, 25,632 European ancestry controls	NA	6p22.2		rs58825580-?	NR	1E-8		1.07058	[1.05-1.09]	NR [NR]	N
786	chr6	26370706	26370707	rs9379862	33204752	Butler-Laporte G	2020-09-24	Open Forum Infect Dis	Genetic Determinants of Antibody-Mediated Immune Responses to Infectious Diseases Agents: A Genome-Wide and HLA Association Study.	Epstein-Barr virus VCA p18 antibody levels	8,518 White British ancestry individuals	NA	6p22.2	BTN3A2	rs9379862-T	0.740	1E-8		0.1	[0.065-0.135] unit increase	NR [25472218] (imputed)	N
786	chr6	26374409	26374410	rs9379870	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.2	BTN3A2	rs9379870-A	NR	2E-9		6.039	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
786	chr6	26374657	26374658	rs2073526	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	6p22.2	NR	rs2073526-G	0.411531	1E-10		0.041051354	[0.029-0.054] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
786	chr6	26374657	26374658	rs2073526	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	6p22.2	NR	rs2073526-A	0.555570668992424	9E-10		0.0072321147	[0.0049-0.0095] unit decrease	NR [NR]	N
786	chr6	26374657	26374658	rs2073526	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	6p22.2	Intergenic	rs2073526-A	0.5542	1E-26	(MTAG)	0.0177	[0.014-0.021] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
786	chr6	26374657	26374658	rs2073526	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	6p22.2	Intergenic	rs2073526-G	0.4458	2E-18		0.02	[0.015-0.025] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
786	chr6	26374657	26374658	rs2073526	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	6p22.2	Intergenic	rs2073526-A	0.5573	3E-19	(MTAG)	0.0207	[0.016-0.025] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
786	chr6	26374657	26374658	rs2073526	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	6p22.2	Intergenic	rs2073526-A	0.5573	1E-10		0.0186	[0.013-0.024] unit increase	Affymetrix, Illumina [10100000] (imputed)	N
786	chr6	26376160	26376161	rs1985732	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms (MTAG)	354,862 European ancestry individuals	NA	6p22.2	NR	rs1985732-A	0.7073	6E-9		0.0136	[0.0091-0.0181] unit increase	Illumina [NR] (imputed)	N
786	chr6	26376367	26376368	rs28551159	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA	6p22.2	NR	rs28551159-?	NR	1E-7		0.0622	[0.039-0.085] unit decrease	Illumina [at least 560000] (imputed)	N
786	chr6	26376627	26376628	rs12214031	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Schizophrenia (MTAG)	940,613 European ancestry individuals	NA			rs12214031-?	NR	1E-9				NR [2625067]	N
786	chr6	26376831	26376832	rs13218591	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	65,967 individuals	NA	6p22.2	NR	rs13218591-?		2E-12				NR [8377093]	N
786	chr6	26376831	26376832	rs13218591	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depression	688,809 European ancestry individuals	NA	6p22.2	NR	rs13218591-T	NR	2E-8		5.608	z score increase	Affymetrix [10847151] (imputed)	N
786	chr6	26376831	26376832	rs13218591	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p22.2	BTN2A1, BTN2A2, BTN2A3P, BTN3A1, BTN3A2, BTN3A3, LOC285819	rs13218591-T		6E-13		1.08	[1.06-1.10]	Affymetrix, Illumina [NR]	N
786	chr6	26376867	26376868	rs9393716	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	6p22.2	NR	rs9393716-G	0.197943933788372	2E-10		0.011956034	[0.0083-0.0156] unit decrease	NR [NR]	N
786	chr6	26376867	26376868	rs9393716	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	6p22.2	NR	rs9393716-G	0.197943933788372	3E-10		0.009803574	[0.0068-0.0129] unit decrease	NR [NR]	N
786	chr6	26377990	26377991	rs34637389	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Liver iron content	32,858 European ancestry individuals	NA	6p22.2	BTN2A2	rs34637389-?	NR	2E-66	(conditional)	0.191	NR mg/g increase	Affymetrix [9390170] (imputed)	N
786	chr6	26378680	26378681	rs1624064	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.2	BTN3A2	rs1624064-C	NR	1E-10		0.0183562	[0.013-0.024] unit decrease	Affymetrix [321016] (imputed)	N
786	chr6	26378680	26378681	rs1624064	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	6p22.2	BTN3A2	rs1624064-T	0.5619	4E-6		0.0317	[0.018-0.045] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
786	chr6	26379439	26379440	rs9467732	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6p22.2	BTN3A2	rs9467732-T	NR	3E-9		0.0199811	[0.013-0.027] unit decrease	Affymetrix [321114] (imputed)	N
786	chr6	26381659	26381660	rs9461246	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p22.2	BTN2A2	rs9461246-A	NR	1E-12		0.0335225	[0.024-0.043] unit decrease	Affymetrix [323123] (imputed)	N
786	chr6	26385092	26385093	rs2072806	29397368	Meng W	2018-01-31	EBioMedicine	A Genome-Wide Association Study Finds Genetic Associations with Broadly-Defined Headache in UK Biobank (N=223,773).	Headache	74,461 British ancestry cases, 149,321 British ancestry controls	NA	6p22.2	BTN2A2	rs2072806-G	NR	5E-9		0.0121	[0.008-0.0162] unit decrease	Affymetrix [9304965] (imputed)	N
786	chr6	26386587	26386587	rs34395343	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.2	BTN2A2	rs34395343-GA	NR	1E-15		0.0347312	[0.026-0.043] unit decrease	Affymetrix [321016] (imputed)	N
786	chr6	26388671	26388672	rs1796518	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.2	BTN2A2	rs1796518-T	NR	6E-9		5.814	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
786	chr6	26388671	26388672	rs1796518	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	6p22.2	BTN2A2	rs1796518-T	NR	2E-8		0.017031766	[0.011-0.023] unit increase	Affymetrix [NR]	N
786	chr6	26391393	26391394	rs2237234	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p22.2	BTN2A1, BTN2A2, BTN2A3P, BTN3A1, BTN3A2, BTN3A3, LOC285819	rs2237234-?		4E-10		1.0752687	[1.05-1.1]	Affymetrix, Illumina [NR]	N
786	chr6	26391394	26391395	rs2237235	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking status (current vs never)	40,456 European ancestry current smokers, 13,511 African American current smokers, 2,920 Hispanic current smokers, 59,056 European ancestry mostly never smokers, 17,751 African American mostly never smokers, 7,195 Hispanic mostly never smokers	NA	6p22.2		rs2237235-A	NR	1E-8	(EA)	1.07	NR	Affymetrix [~ 79000000] (imputed)	N
786	chr6	26391394	26391395	rs2237235	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking initiation	842,717 European ancestry individuals	NA	6p22.2	BTN2A2	rs2237235-G		5E-8		0.977	[NR]	Affymetrix [up to 79000000] (imputed)	N
786	chr6	26393020	26393021	rs1614887	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	6p22.2	Intergenic	rs1614887-A	0.5391	2E-17	(MTAG)	0.0153	[0.012-0.019] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
786	chr6	26393020	26393021	rs1614887	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	6p22.2	BTN2A2	rs1614887-A	NR	3E-12		0.021585971	[0.016-0.028] unit increase	Affymetrix [NR]	N
786	chr6	26393020	26393021	rs1614887	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	6p22.2	NR	rs1614887-?	NR	9E-6				Illumina [at least 7383741] (imputed)	N
786	chr6	26401437	26401438	rs6912853	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.2	BTN3A1	rs6912853-T	NR	3E-11		0.0253999	[0.018-0.033] unit decrease	Affymetrix [321016] (imputed)	N
786	chr6	26403035	26403036	rs12200782	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Small cell lung carcinoma	2,664 European ancestry cases,  21,444 European ancestry controls	NA	6p22.2	BTN3A1	rs12200782-C	0.90335766	1E-6		1.2811285	[1.16-1.42]	Illumina [10439017] (imputed)	N
786	chr6	26404373	26404374	rs3799378	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.2	BTN3A1	rs3799378-A	NR	2E-11		6.689	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
786	chr6	26404373	26404374	rs3799378	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	6p22.2	BTN3A1	rs3799378-A	NR	4E-10		0.022095354	[0.015-0.029] unit decrease	Affymetrix [NR]	N
786	chr6	26404693	26404694	rs3799379	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	6p22.2	BTN3A1	rs3799379-T	NR	4E-8		0.016789202	[0.011-0.023] unit increase	Affymetrix [NR]	N
786	chr6	26408550	26408551	rs75782365	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Schizophrenia (MTAG)	940,613 European ancestry individuals	NA	6p22.2		rs75782365-?	NR	2E-27				NR [2625067]	N
786	chr6	26408550	26408551	rs75782365	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p22.2	BTN3A1	rs75782365-G	NR	9E-10		0.0302923	[0.021-0.04] unit decrease	Affymetrix [323858] (imputed)	N
786	chr6	26408550	26408551	rs75782365	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	67,764 individuals	NA	6p22.2	NR	rs75782365-?		3E-25				NR [8377093]	N
786	chr6	26408550	26408551	rs75782365	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Bipolar disorder (MTAG)	65,682 individuals	NA	6p22.2	NR	rs75782365-?		3E-18				NR [520857]	N
786	chr6	26408550	26408551	rs75782365	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Help-seeking from a GP	113,262 British ancestry cases, 219,360 British ancestry controls	NA	6p22.2	NR	rs75782365-T	0.89	1E-9		1.0515248	[1.04-1.07]	NR [5276842] (imputed)	N
786	chr6	26408550	26408551	rs75782365	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p22.2	NR	rs75782365-G	0.1045	6E-9		0.0112	[0.0075-0.0149] unit decrease	NR [7666894] (imputed)	N
786	chr6	26408550	26408551	rs75782365	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p22.2	ABT1, BTN1A1, BTN2A1, BTN2A2, BTN2A3P, BTN3A1, BTN3A2, BTN3A3, GUSBP2, HCG11, HFE, HIST1H1A, HIST1H1C, HIST1H1D, HIST1H1E, HIST1H1T, HIST1H2AA, HIST1H2AB, HIST1H2AC, HIST1H2AD, HIST1H2AE, HIST1H2AG, HIST1H2AH, HIST1H2APS1, HIST1H2BA, HIST1H2BB, HIST1H2BC, HIST1H2BD, HIST1H2BE, HIST1H2BF, HIST1H2BG, HIST1H2BH, HIST1H2BI, HIST1H2BJ, HIST1H2BK, HIST1H3A, HIST1H3B, HIST1H3C, HIST1H3D, HIST1H3E, HIST1H3F, HIST1H3G, HIST1H4A, HIST1H4B, HIST1H4C, HIST1H4D, HIST1H4E, HIST1H4F, HIST1H4G, HIST1H4H, HIST1H4I, HMGN4, LINC00240, LOC100270746, LOC285819, LRRC16A, MIR3143, POM121L2, PRSS16, SCGN, SLC17A1, SLC17A2, SLC17A3, SLC17A4, TRIM38, VN1R10P, ZNF204P, ZNF322, ZNF391	rs75782365-T		8E-24		1.21	[1.16-1.25]	Affymetrix, Illumina [NR]	N
786	chr6	26409889	26409890	rs41266839	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p22.2	BTN3A1	rs41266839-C		4E-52		0.055	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
786	chr6	26409889	26409890	rs41266839	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	6p22.2	BTN3A1	rs41266839-C	0.075741475	4E-9		1.1371641	[1.089526405-1.186884631]	Illumina [10439017] (imputed)	N
786	chr6	26409889	26409890	rs41266839	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	6p22.2	NR	rs41266839-G	NR	7E-27		1.25	[NR]	Illumina [7158791] (imputed)	N
786	chr6	26422626	26422627	rs3734537	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p22.2		rs3734537-C	0.868	1E-40				Affymetrix [10369434] (imputed)	N
786	chr6	26422626	26422627	rs3734537	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p22.2		rs3734537-C	0.868	6E-26				Affymetrix [10369434] (imputed)	N
786	chr6	26422626	26422627	rs3734537	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p22.2		rs3734537-C	0.868	2E-34				Affymetrix [10369434] (imputed)	N
786	chr6	26422626	26422627	rs3734537	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p22.2		rs3734537-C	0.868	2E-51				Affymetrix [10369434] (imputed)	N
786	chr6	26422626	26422627	rs3734537	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p22.2		rs3734537-C	0.868	7E-26				Affymetrix [10369434] (imputed)	N
786	chr6	26422626	26422627	rs3734537	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p22.2		rs3734537-C	0.868	3E-20				Affymetrix [10369434] (imputed)	N
786	chr6	26423559	26423560	rs4320356	31152121	Zhu M	2019-05-31	Diabetes Care	Identification of Novel T1D Risk Loci and Their Association With Age and Islet Function at Diagnosis in Autoantibody-Positive T1D Individuals: Based on a Two-Stage Genome-Wide Association Study.	Type 1 diabetes	1,005 Han Chinese ancestry cases, 1,257 Han Chinese ancestry controls	1,378 Han Chinese ancestry cases, 3,774 Han Chinese ancestry controls	6p22.2	BTN3A1	rs4320356-T	0.28	3E-8		1.26	[1.16-1.36]	Illumina [787224] (imputed)	N
786	chr6	26434629	26434630	rs9366656	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Pork consumption	335,576 European ancestry individuals	NA	6p22.2	LRRC16A, SCGN, SLC17A4	rs9366656-?	NR	7E-15		0.00605991	[-0.00098-0.0131] unit decrease	Affymetrix [25921788] (imputed)	N
786	chr6	26434629	26434630	rs9366656	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Oily fish consumption	335,576 European ancestry individuals	NA	6p22.2	LRRC16A, SCGN, SLC17A4, SLC17A1, SLC17A3	rs9366656-?	NR	7E-15		0.0278119	[0.021-0.035] unit increase	Affymetrix [25921788] (imputed)	N
786	chr6	26436398	26436399	rs10456329	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p22.2	BTN2A3P	rs10456329-A	NR	1E-9		0.0276631	[0.019-0.037] unit decrease	Affymetrix [323123] (imputed)	N
786	chr6	26441639	26441640	rs13220495	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Diastolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	6p22.2	BTN3A3	rs13220495-T	0.345	8E-13		0.3191	[0.23-0.41] mmHg decrease	Affymetrix [NR] (imputed)	N
786	chr6	26441639	26441640	rs13220495	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Squamous cell lung carcinoma	7,426 European ancestry cases, 55,627 European ancestry controls	NA	6p22.2	BTN3A3	rs13220495-T	0.075098735	3E-8		1.2138206	[1.133133528-1.300253026]	Illumina [10439017] (imputed)	N
786	chr6	26441725	26441725	rs573022400	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	6p22.2	BTN3A3	rs573022400-?	0.8932	9E-11		0.0296	[0.021-0.039] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
786	chr6	26454955	26454956	rs66757203	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	6p22.2	BTN3A3	rs66757203-C	0.880396	1E-17		0.0257398	[0.02-0.032] unit increase	Affymetrix [NR] (imputed)	N
786	chr6	26455810	26455811	rs9295689	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6p22.2	BTN3A3	rs9295689-C	NR	9E-10		0.0188941	[0.013-0.025] unit increase	Affymetrix [321114] (imputed)	N
786	chr6	26463573	26463574	rs13195401	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	6p22.2	NR	rs13195401-T	0.0932772021441396	5E-18		0.013649994	[0.011-0.017] unit decrease	NR [NR]	N
786	chr6	26463573	26463574	rs13195401	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p22.2	NR	rs13195401-T	0.0874	2E-9	(EA)	0.0718	[0.048-0.095] unit decrease	Illumina [~ 11800000] (imputed)	N
786	chr6	26463574	26463575	rs13195402	34002096	Mullins N	2021-05-17	Nat Genet	Genome-wide association study of more than 40,000 bipolar disorder cases provides new insights into the underlying biology.	Bipolar disorder	41,917 European ancestry cases, 371,549 European ancestry controls	NA	6p22.2	MHC	rs13195402-G	0.919	6E-15		1.14614	[1.11-1.18]	Affymetrix, Illumina [7549318] (imputed)	N
786	chr6	26463574	26463575	rs13195402	32752121	Nedoszytko B	2020-07-31	Int J Mol Sci	Results from a Genome-Wide Association Study (GWAS) in Mastocytosis Reveal New Gene Polymorphisms Associated with WHO Subgroups.	Cutaneous mastocytosis	141 European ancestry cases, 5,606 European ancestry controls	NA	6p22.2	BTN2A1	rs13195402-T	0.03641	3E-7		2.802	[2.39-3.21]	Illumina [281811]	N
786	chr6	26463659	26463660	rs13195509	33909500	Moll M	2021-04-28	Am J Physiol Lung Cell Mol Physiol	A Systematic Analysis of Protein-altering Exonic Variants in Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease	up to 31,465 European ancestry cases, up to 203,688 European ancestry controls, up to 1,413 African ancestry cases, up to 6,080 African ancestry controls, up to 287 East Asian ancestry cases, up to 7,484 East Asian ancestry controls, up to 61 Hispanic cases, up to 613 Hispanic controls	NA	6p22.2	BTN2A1	rs13195509-A	0.12	3E-12		1.11	[1.08 -1.15]	Illumina [at least 109036]	N
786	chr6	26463659	26463660	rs13195509	33649182	Penova M	2021-03-01	Proc Natl Acad Sci U S A	Genome wide association study of HTLV-1-associated myelopathy/tropical spastic paraparesis in the Japanese population.	HTLV-1 associated myelopathy	731 Japanese ancestry cases, 846 Japanese ancestry controls	NA	6p22.2		rs13195509-G	0.97	3E-7		0.37	[0.26-0.55]	Illumina [126394]	N
786	chr6	26466034	26466035	rs2273558	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	6p22.2	NR	rs2273558-C	0.308268608713756	2E-8		0.009430085	[0.0062-0.0127] unit decrease	NR [NR]	N
786	chr6	26466034	26466035	rs2273558	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.2	BTN2A1	rs2273558-A	NR	1E-10		6.407	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
786	chr6	26466034	26466035	rs2273558	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	6p22.2	BTN2A1	rs2273558-A	NR	7E-9		0.01853987	[0.012-0.025] unit decrease	Affymetrix [NR]	N
786	chr6	26466388	26466389	rs1977199	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p22.2	ABT1, BTN1A1, BTN2A1, BTN2A2, BTN2A3P, BTN3A1, BTN3A3, GUSBP2, HCG11, HMGN4, LINC00240, LOC100270746, LOC285819, ZNF322	rs1977199-A		1E-8		1.07	[1.04-1.09]	Affymetrix, Illumina [NR]	N
786	chr6	26466391	26466392	rs1977200	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.2	BTN2A1	rs1977200-G	NR	3E-11		0.0247697	[0.017-0.032] unit decrease	Affymetrix [323858] (imputed)	N
786	chr6	26466391	26466392	rs1977200	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.2	BTN2A1	rs1977200-G	NR	5E-11		0.0244546	[0.017-0.032] unit decrease	Affymetrix [127266] (imputed)	N
786	chr6	26466391	26466392	rs1977200	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.2	BTN2A1	rs1977200-A	NR	3E-8		5.572	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
786	chr6	26467181	26467182	rs3799380	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms (MTAG)	955,012 individuals	NA	6p22.2	NR	rs3799380-?		3E-12				NR [520857]	N
786	chr6	26467181	26467182	rs3799380	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms	688,809 individuals	NA	6p22.2	NR	rs3799380-?		8E-9				NR [11140414]	N
786	chr6	26467181	26467182	rs3799380	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depression	688,809 European ancestry individuals	NA	6p22.2	NR	rs3799380-T	NR	8E-9		5.773	z score increase	Affymetrix [10847151] (imputed)	N
786	chr6	26468325	26468326	rs3734542	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in ever smokers	23,223 European ancestry cases,  16,964 European ancestry controls	NA	6p22.2	BTN2A1	rs3734542-A	0.084987628	3E-7		1.1447185	[1.087233917-1.205242518]	Illumina [10439017] (imputed)	N
786	chr6	26470861	26470862	rs4711112	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p22.2		rs4711112-?	NR	2E-13		0.0190246	[0.014-0.024] unit decrease	Affymetrix [20259828] (imputed)	N
786	chr6	26472654	26472655	rs7763910	31527586	An J	2019-09-16	Nat Commun	Gastroesophageal reflux GWAS identifies risk loci that also associate with subsequent severe esophageal diseases.	Gastroesophageal reflux disease	80,265 European and unknown ancestry cases, 305,011 European and unknown ancestry controls	NA	6p22.2	LOC285819, BTN1A1, BTN2A1	rs7763910-G	NR	1E-10		1.0371743	[1.03-1.05]	Affymetrix, Illumina [up to 7600000] (imputed)	N
787	chr6	26477053	26477053	rs145093187	31577861	Dai J	2019-10-31	Int J Cancer	Genome-wide association study of INDELs identified four novel susceptibility loci associated with lung cancer risk.	Lung cancer	20,871 European ancestry cases, 15,971 European ancestry controls, 2,331 Chinese ancestry cases, 3,077 Chinese ancestry controls	NA	6p22.2	BTN2A1	rs145093187-T	0.12	9E-9		0.87	[0.83-0.91]	Illumina [484196]	N
787	chr6	26478251	26478252	rs34104395	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	6p22.2	LOC285819	rs34104395-C	NR	9E-20	(EA)	1.19	[1.15-1.23]	Illumina [6627481] (imputed)	N
787	chr6	26478824	26478825	rs6926677	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	6p22.2	NR	rs6926677-C	0.194231741641651	1E-11		0.010305096	[0.0073-0.0133] unit decrease	NR [NR]	N
787	chr6	26483909	26483910	rs12525684	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	6p22.2		rs12525684-?	NR	1E-10		0.0188	unit decrease	NR [NR]	N
787	chr6	26485572	26485573	rs9348721	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	6p22.2	BTN2A1	rs9348721-A	NR	6E-14		0.034401607	[0.025-0.043] unit decrease	Affymetrix [NR]	N
787	chr6	26488859	26488860	rs16891727	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fish- and plant-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	6p22.2	LRRC16A, SCGN, SLC17A4, SLC17A1, SLC17A3, SLC17A2, TRIM38, HIST1H1A, HIST1H3A, HIST1H4A, HIST1H4B, HIST1H3B, HIST1H2AB, HIST1H2BB, HIST1H3C, HIST1H1C, HFE, HIST1H4C, HIST1H1T, HIST1H2BC, HIST1H2AC, HIST1H2BD, HIST1H2BE, HIST1H4D, HIST1H3D, HIST1H2AD, HIST1H2BF, HIST1H4E, HIST1H3G, HIST1H2BI, BTN3A2, BTN2A2, BTN3A1, BTN3A3, BTN2A1, BTN1A1, HMGN4, ABT1, ZNF322, HIST1H2BJ, HIST1H2AG, HIST1H2BK, HIST1H4I, HIST1H2AH, PRSS16, POM121L2, ZNF391, ZNF184, HIST1H2BL, HIST1H2AI, HIST1H3H, HIST1H2AJ, HIST1H2BM, HIST1H4J, HIST1H4K, HIST1H2AK, HIST1H2BN, HIST1H2AL, HIST1H1B, HIST1H3I, HIST1H4L, HIST1H3J, HIST1H2AM, HIST1H2BO, OR2B2, OR2B6, ZNF165, ZSCAN16, ZKSCAN8, ZSCAN9, ZKSCAN4, NKAPL, PGBD1, ZSCAN31, ZKSCAN3, ZSCAN12, ZSCAN23, GPX6, SCAND3, TRIM27, C6orf100, ZNF311, OR2W1, OR2B3, OR2J1, OR2J3, OR2J2, OR14J1, OR5V1, OR12D3, OR12D2, OR11A1, OR10C1, OR2H1, MAS1L, UBD, GABBR1, OR2H2	rs16891727-?	NR	3E-12		0.0248855	[0.018-0.032] unit increase	Affymetrix [25921788] (imputed)	N
787	chr6	26489606	26489607	rs34313099	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	6p22.2	BTN1A1	rs34313099-T	NR	2E-11		0.02650395	[0.019-0.034] unit increase	Affymetrix [NR]	N
787	chr6	26496602	26496603	rs2145318	34187846	Ong JS	2021-06-29	Gut	Multitrait genetic association analysis identifies 50 new risk loci for gastro-oesophageal reflux, seven new loci for Barrett's oesophagus and provides insights into clinical heterogeneity in reflux diagnosis.	Gastroesophageal reflux disease	129,080 European ancestry cases, 473,524 European ancestry controls	462,753 cases, 1,127,474 controls	6p22.2	HCG11, HMGN4, BTN2A1, BTN1A1, BTN3A3	rs2145318-T	0.51	2E-13		0.035	unit decrease	NR [2324712] (imputed)	N
787	chr6	26498425	26498426	rs9467773	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	6p22.2	BTN1A1	rs9467773-A	NR	8E-13		0.022004398	[0.016-0.028] unit increase	Affymetrix [NR]	N
787	chr6	26498757	26498758	rs72843784	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	6p22.2	NR	rs72843784-T	0.06	8E-10		1.19	[1.13-1.25]	Illumina [8468885] (imputed)	N
787	chr6	26499184	26499185	rs13220261	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	6p22.2	Intergenic	rs13220261-T	0.0894	2E-25	(MTAG)	0.0301	[0.024-0.036] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
787	chr6	26499184	26499185	rs13220261	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	6p22.2	BTN1A1	rs13220261-T	NR	1E-14		0.036320135	[0.027-0.046] unit increase	Affymetrix [NR]	N
787	chr6	26500562	26500563	rs13194984	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Liver iron content	32,858 European ancestry individuals	NA	6p22.2	BTN1A1	rs13194984-?	NR	1E-38	(conditional)	0.143	NR mg/g increase	Affymetrix [9390170] (imputed)	N
787	chr6	26500562	26500563	rs13194984	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	6p22.2		rs13194984-G	0.856	2E-134		0.38	[-0.41--0.35] % decrease	Affymetrix [NR] (imputed)	N
787	chr6	26500562	26500563	rs13194984	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.2	BTN1A1	rs13194984-T	NR	2E-8		0.0222595	[0.014-0.03] unit increase	Affymetrix [321016] (imputed)	N
787	chr6	26500562	26500563	rs13194984	27089180	Day FR	2016-04-18	Nat Genet	Physical and neurobehavioral determinants of reproductive onset and success.	Age at first sexual intercourse	59,357 British ancestry males, 66,310 British ancestry females	NA	6p22.2	BTN1A1	rs13194984-G	0.855954	2E-7	(men)	0.0283803	[0.018-0.039] unit increase	Affymetrix [641018] (imputed)	N
787	chr6	26500562	26500563	rs13194984	19084217	Benyamin B	2008-12-17	Am J Hum Genet	Variants in TF and HFE explain approximately 40% of genetic variation in serum-transferrin levels.	Iron status biomarkers	459 European ancestry twin pairs	NA	6p22.2	BTN1A1	rs13194984-?	NR	6E-8	(transferrin saturation)			Illumina [315887]	N
787	chr6	26509381	26509382	rs35555795	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p22.2	BTN3A3, BTN1A1, HCG11, HMGN4, ABT1, BTN2A1, CTA-14H9.5, RP11-457M11.7, RP11-457M11.6, ZNF322, GUSBP2, POM121L6P, LINC00240	rs35555795-T	0.081571	1E-13	(EA, MHC class I polypeptide-related sequence B)	0.596	[0.44-0.75] unit decrease	Affymetrix [509946]	N
787	chr6	26510563	26510564	rs1056667	25201988	Rietveld CA	2014-09-08	Proc Natl Acad Sci U S A	Common genetic variants associated with cognitive performance identified using the proxy-phenotype method.	Educational attainment	106,736 European ancestry individuals	NA	6p22.2	intergenic	rs1056667-T	0.628	5E-7		0.023	[NR] unit increase	Affymetrix, Illumina [NR] (imputed)	N
787	chr6	26510563	26510564	rs1056667	23722424	Rietveld CA	2013-05-30	Science	GWAS of 126,559 individuals identifies genetic variants associated with educational attainment.	Educational attainment (years of education)	up to 126,559 European ancestry individuals	NA	6p22.2	BTN1A1	rs1056667-T	0.538	2E-8		0.093	[NR] unit increase	Affymetrix, Illumina, Perlegen [up to 23218963] (imputed)	N
787	chr6	26510747	26510748	rs3799383	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p22.2	NR	rs3799383-T	0.14	9E-9		1.1	[1.07-1.14]	Affymetrix [9886854] (imputed)	N
787	chr6	26510747	26510748	rs3799383	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p22.2	NR	rs3799383-T	0.14	2E-9			[NR]	Affymetrix [9886854] (imputed)	N
787	chr6	26510747	26510748	rs3799383	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in non-current smokers	16,488 European ancestry cases, 169,688 European ancestry controls	NA	6p22.2	NR	rs3799383-T	0.14	1E-8		1.1	[1.07-1.14]	Affymetrix [9886854] (imputed)	N
787	chr6	26511075	26511076	rs9379882	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p22.2	NR	rs9379882-T	0.14	3E-7		1.12	[1.07-1.17]	Affymetrix [9886854] (imputed)	N
787	chr6	26511075	26511076	rs9379882	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p22.2	NR	rs9379882-T	0.14	2E-10			[NR]	Affymetrix [9886854] (imputed)	N
787	chr6	26511075	26511076	rs9379882	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in never smokers	8,631 European ancestry cases, 120,544 European ancestry controls	NA	6p22.2	NR	rs9379882-T	0.14	3E-7		1.12	[1.08-1.18]	Affymetrix [9886854] (imputed)	N
787	chr6	26511077	26511078	rs538711397	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	6p22.2	BTN1A1	rs538711397-A	0.0011	6E-6		1.506	[0.85-2.16] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
787	chr6	26511077	26511078	rs538711397	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	6p22.2	BTN1A1	rs538711397-A	0.0011	5E-7		1.6817	[1.03-2.34] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
787	chr6	26529889	26529890	rs35433030	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	6p22.2	NR	rs35433030-A	NR	5E-8		5.463	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
787	chr6	26530375	26530376	rs66941101	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	6p22.2	Intergenic	rs66941101-T	0.0889	6E-29	(MTAG)	0.0351	[0.029-0.041] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
787	chr6	26534023	26534024	rs6939532	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p22.2	intergenic	rs6939532-?		2E-15		1.1235955	[1.09-1.15]	Affymetrix, Illumina [NR]	N
787	chr6	26534615	26534616	rs9467777	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.2	HMGN4	rs9467777-A	NR	8E-10		6.149	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
787	chr6	26537800	26537801	rs6920256	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA	6p22.2	NR	rs6920256-?	NR	1E-7		0.06	[0.038-0.082] unit increase	Illumina [at least 560000] (imputed)	N
787	chr6	26543649	26543649	rs549190028	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.2	HMGN4	rs549190028-C	NR	3E-11		0.0191942	[0.014-0.025] unit decrease	Affymetrix [321016] (imputed)	N
787	chr6	26569134	26569135	rs36162392	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p22.2	HMGN4	rs36162392-C	NR	1E-9		0.026176	[0.018-0.035] unit decrease	Affymetrix [319769] (imputed)	N
787	chr6	26569134	26569135	rs36162392	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p22.2	HMGN4	rs36162392-C	NR	8E-9		0.0246632	[0.016-0.033] unit decrease	Affymetrix [319769] (imputed)	N
787	chr6	26569134	26569135	rs36162392	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.2	HMGN4	rs36162392-T	NR	2E-17		8.512	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
787	chr6	26569134	26569135	rs36162392	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in ever smokers	23,223 European ancestry cases,  16,964 European ancestry controls	NA	6p22.2	HMGN4, ABT1	rs36162392-C	0.085603567	6E-7		1.1410072	[1.083444904-1.201627582]	Illumina [10439017] (imputed)	N
787	chr6	26571628	26571629	rs6932350	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	6p22.2	NR	rs6932350-A	0.454655	5E-9	(Conditioned on chr6:26171250)	0.014968359	[0.0099-0.02] unit increase	NR [~ 10000000] (imputed)	N
787	chr6	26573630	26573631	rs13214027	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.2	ABT1	rs13214027-C	NR	6E-13		7.207	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
787	chr6	26573630	26573631	rs13214027	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	6p22.2	ABT1	rs13214027-C	NR	4E-12		0.029644042	[0.021-0.038] unit decrease	Affymetrix [NR]	N
787	chr6	26577488	26577489	rs71310736	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p22.2	ABT1	rs71310736-CA	NR	2E-8		0.0234882	[0.015-0.032] unit decrease	Affymetrix [323858] (imputed)	N
787	chr6	26577856	26577857	rs6918506	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6p22.2		rs6918506-C	0.5379	1E-15		0.0113	[0.0086-0.014] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
787	chr6	26579559	26579560	rs9379891	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.2	ABT1	rs9379891-T	NR	4E-14		0.0336927	[0.025-0.042] unit decrease	Affymetrix [323858] (imputed)	N
787	chr6	26579559	26579560	rs9379891	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.2	ABT1	rs9379891-T	NR	9E-14		0.0331847	[0.024-0.042] unit decrease	Affymetrix [127266] (imputed)	N
787	chr6	26581257	26581258	rs141670911	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Small cell lung carcinoma	2,664 European ancestry cases,  21,444 European ancestry controls	NA	6p22.2	HMGN4, ABT1	rs141670911-A	0.904847906	1E-6		1.2866561	[1.16-1.42]	Illumina [10439017] (imputed)	N
787	chr6	26582034	26582035	rs13198716	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Waist circumference variance	347,158 European ancestry individuals	NA	6p22.2	ABT1	rs13198716-?	NR	5E-15				NR [5554549] (imputed)	N
787	chr6	26583128	26583129	rs9467804	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6p22.2		rs9467804-T	0.4768	4E-16	(conditional-joint)	0.0115	[0.0088-0.0142] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
787	chr6	26583128	26583129	rs9467804	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6p22.2	Intergenic	rs9467804-T	0.4768	6E-25	(MTAG)	0.0135	[0.011-0.016] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
787	chr6	26593036	26593037	rs34781270	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	6p22.2	NR	rs34781270-G	0.08	6E-10		1.18	[1.12-1.24]	Illumina [8468885] (imputed)	N
787	chr6	26599508	26599509	rs45527431	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	6p22.2	NR	rs45527431-A	0.0675944	2E-18		0.1104121	[0.086-0.135] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
787	chr6	26599508	26599509	rs45527431	32989287	Cuellar-Partida G	2020-09-28	Nat Hum Behav	Genome-wide association study identifies 48 common genetic variants associated with handedness.	Left-handedness	1,766,671 European ancestry individuals	NA	6p22.2	ABT1	rs45527431-A	0.9148	5E-9		1.0424321	[NR]	Illumina [12493444] (imputed)	N
787	chr6	26599508	26599509	rs45527431	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p22.2	NR	rs45527431-G	0.1052	2E-9		0.0115	[0.0078-0.0152] unit decrease	NR [7666894] (imputed)	N
787	chr6	26605205	26605206	rs9348726	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	6p22.2	NR	rs9348726-A	0.124261030940538	8E-9		0.012736173	[0.0084-0.0171] unit decrease	NR [NR]	N
788	chr6	26631567	26631568	rs66488313	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	6p22.2	ABT1, ZNF322	rs66488313-T	0.076530532	2E-8		1.1313485	[1.083712579-1.18107831]	Illumina [10439017] (imputed)	N
788	chr6	26649830	26649830	rs35159226	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	6p22.2	NR	rs35159226-C	NR	4E-8		1.044	[1.03-1.06]	Affymetrix, Illumina [29235255] (imputed)	N
788	chr6	26651052	26651053	rs13201782	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Squamous cell lung carcinoma	7,426 European ancestry cases, 55,627 European ancestry controls	NA	6p22.2	ZNF322	rs13201782-A	0.076363422	2E-8		1.220866	[1.139177984-1.308411621]	Illumina [10439017] (imputed)	N
788	chr6	26655820	26655821	rs2451715	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.2	ZNF322	rs2451715-C	NR	2E-8		0.0165186	[0.011-0.022] unit decrease	Affymetrix [321016] (imputed)	N
788	chr6	26664267	26664268	rs9348729	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	6p22.2	ZNF322	rs9348729-T	NR	2E-9		0.02229694	[0.015-0.03] unit decrease	Affymetrix [NR]	N
788	chr6	26668215	26668216	rs62396201	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	6p22.2	Intergenic	rs62396201-G	0.5409	9E-10		0.012	[0.0081-0.0159] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
788	chr6	26670490	26670491	rs6901225	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p22.2	ZNF322	rs6901225-A	0.8782	5E-7		0.0535	[0.033-0.074] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
788	chr6	26670898	26670899	rs2498381	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Pork consumption	335,576 European ancestry individuals	NA	6p22.2	LRRC16A, SCGN, SLC17A4, SLC17A1, SLC17A3	rs2498381-?	NR	4E-10		0.00154716	[-0.00326-0.00635] unit decrease	Affymetrix [25921788] (imputed)	N
788	chr6	26670898	26670899	rs2498381	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Oily fish consumption	335,576 European ancestry individuals	NA	6p22.2	LRRC16A, SCGN, SLC17A4, SLC17A1, SLC17A3	rs2498381-?	NR	4E-10		0.0153054	[0.011-0.02] unit decrease	Affymetrix [25921788] (imputed)	N
788	chr6	26670898	26670899	rs2498381	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fish- and plant-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	6p22.2	LRRC16A, SCGN, SLC17A4, SLC17A1, SLC17A3, SLC17A2, TRIM38, HIST1H1A, HIST1H3A, HIST1H4A, HIST1H4B, HIST1H3B, HIST1H2AB, HIST1H2BB, HIST1H3C, HIST1H1C, HFE, HIST1H4C, HIST1H1T, HIST1H2BC, HIST1H2AC, HIST1H2BD, HIST1H2BE, HIST1H4D, HIST1H3D, HIST1H2AD, HIST1H2BF, HIST1H4E, HIST1H3G, HIST1H2BI, BTN3A2, BTN2A2, BTN3A1, BTN3A3, BTN2A1, BTN1A1, HMGN4, ABT1, ZNF322, HIST1H2BJ, HIST1H2AG, HIST1H2BK, HIST1H4I, HIST1H2AH, PRSS16, POM121L2, ZNF391, ZNF184, HIST1H2BL, HIST1H2AI, HIST1H3H, HIST1H2AJ, HIST1H2BM, HIST1H4J, HIST1H4K, HIST1H2AK, HIST1H2BN, HIST1H2AL, HIST1H1B, HIST1H3I, HIST1H4L, HIST1H3J, HIST1H2AM, HIST1H2BO, OR2B2, OR2B6, ZNF165, ZSCAN16, ZKSCAN8, ZSCAN9, ZKSCAN4, NKAPL, PGBD1, ZSCAN31, ZKSCAN3, ZSCAN12, ZSCAN23, GPX6, SCAND3, TRIM27, C6orf100, ZNF311, OR2W1, OR2B3, OR2J1, OR2J3, OR2J2, OR14J1, OR5V1, OR12D3, OR12D2, OR11A1, OR10C1, OR2H1, MAS1L, UBD, GABBR1, OR2H2	rs2498381-?	NR	1E-8		0.0137912	[0.009-0.0186] unit decrease	Affymetrix [25921788] (imputed)	N
788	chr6	26671134	26671135	rs9461288	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6p22.2	ZNF322	rs9461288-C	NR	6E-13		0.022532	[0.016-0.029] unit increase	Affymetrix [321114] (imputed)	N
788	chr6	26671134	26671135	rs9461288	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p22.2	ZNF322	rs9461288-C	NR	3E-8		0.0174903	[0.011-0.024] unit increase	Affymetrix [323858] (imputed)	N
788	chr6	26680697	26680698	rs71557345	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p22.2	intergenic	rs71557345-G	0.929999999999999	4E-10	(EA)	1.0869565	[1.04-1.14] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
788	chr6	26686130	26686131	rs10456332	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Small cell lung carcinoma	2,664 European ancestry cases,  21,444 European ancestry controls	NA	6p22.2	ZNF322, GUSBP2	rs10456332-A	0.90103678	7E-6		1.271729	[1.14-1.41]	Illumina [10439017] (imputed)	N
788	chr6	26699232	26699233	rs61655050	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.2	RP11-457M11.5	rs61655050-T	NR	7E-16		0.0319082	[0.024-0.04] unit decrease	Affymetrix [321016] (imputed)	N
788	chr6	26699232	26699233	rs61655050	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p22.2	RP11-457M11.5	rs61655050-T	NR	3E-15		0.03415	[0.026-0.043] unit decrease	Affymetrix [323123] (imputed)	N
788	chr6	26701252	26701252	rs147951948	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6p22.2	RP11-457M11.5	rs147951948-GT	NR	4E-13		0.0241247	[0.018-0.031] unit decrease	Affymetrix [321114] (imputed)	N
788	chr6	26701252	26701252	rs147951948	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p22.2	RP11-457M11.5	rs147951948-GT	NR	2E-9		0.019988	[0.013-0.027] unit decrease	Affymetrix [323858] (imputed)	N
788	chr6	26702049	26702050	rs375555600	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure	35,269 European ancestry cases, 63,451 European ancestry controls	NA	6p22.2	NR	rs375555600-A	0.0308233	2E-6		1.067	[1.04-1.09]	Affymetrix [7791636] (imputed)	N
788	chr6	26705858	26705859	rs2451729	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.2	ENSG00000261584	rs2451729-T	NR	4E-10		6.263	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
788	chr6	26708206	26708207	rs12195114	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	6p22.2	NA	rs12195114-A	0.7513	7E-10		0.002	[0.0014-0.0026] unit decrease	Affymetrix [15275733] (imputed)	N
789	chr6	26739451	26739452	rs34073492	33204752	Butler-Laporte G	2020-09-24	Open Forum Infect Dis	Genetic Determinants of Antibody-Mediated Immune Responses to Infectious Diseases Agents: A Genome-Wide and HLA Association Study.	Varicella zoster virus glycoproteins E and I antibody levels	7,595 White British ancestry individuals	NA	6p22.2	457M11.5, RP11	rs34073492-C	0.877	6E-14		0.19	[0.14-0.24] unit decrease	NR [25472218] (imputed)	N
789	chr6	26739486	26739487	rs35144506	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p22.2	NR	rs35144506-G	0.1183	5E-9		0.0114	[0.0077-0.0151] unit decrease	NR [7666894] (imputed)	N
789	chr6	26752759	26752760	rs6456757	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Degree of unsaturation	115,006 European ancestry individuals	NA	6p22.2		rs6456757-T	0.550896	4E-8		0.0258434	[0.017-0.035] unit decrease	NR [11722792] (imputed)	N
789	chr6	26753799	26753800	rs13220570	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	121,047 East Asian ancestry individuals	NA	6p22.2	NR	rs13220570-T	0.951865	4E-10		0.071614	[0.049-0.094] SD units increase	Affymetrix, Illumina [16286195] (imputed)	N
789	chr6	26753799	26753800	rs13220570	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	6p22.2	ZNF322	rs13220570-T	0.867466	5E-14		0.0217739	[0.016-0.027] unit increase	Affymetrix [NR] (imputed)	N
789	chr6	26761744	26761745	rs34244947	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	6p22.2	NR	rs34244947-C	0.08	2E-10		1.2	[1.14-1.26]	Illumina [8468885] (imputed)	N
789	chr6	26761744	26761745	rs34244947	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	6p22.2	Intergenic	rs34244947-T	0.882	4E-25	(MTAG)	0.0368	[0.03-0.044] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
789	chr6	26761744	26761745	rs34244947	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in ever smokers	23,223 European ancestry cases,  16,964 European ancestry controls	NA	6p22.2	ZNF322, GUSBP2	rs34244947-C	0.087135975	6E-7		1.158347	[1.093248318-1.227321976]	Illumina [10439017] (imputed)	N
789	chr6	26761744	26761745	rs34244947	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	6p22.2	ZNF322, GUSBP2	rs34244947-C	0.088018153	9E-9		1.137643	[1.088639372-1.188852408]	Illumina [10439017] (imputed)	N
789	chr6	26762666	26762667	rs10946850	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p22.2	RP11-457M11.5	rs10946850-T	NR	6E-10		0.0218943	[0.015-0.029] unit decrease	Affymetrix [323123] (imputed)	N
789	chr6	26799325	26799325	rs138369630	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6p22.2	GUSBP2	rs138369630-G	NR	6E-11		0.0203037	[0.014-0.026] unit decrease	Affymetrix [321114] (imputed)	N
789	chr6	26801456	26801457	rs4236042	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.2	GUSBP2	rs4236042-G	NR	4E-10		0.0205495	[0.014-0.027] unit decrease	Affymetrix [323858] (imputed)	N
789	chr6	26801456	26801457	rs4236042	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.2	GUSBP2	rs4236042-G	NR	3E-10		0.0208214	[0.014-0.027] unit decrease	Affymetrix [127266] (imputed)	N
789	chr6	26809266	26809267	rs12209891	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	6p22.2		rs12209891-?	NR	5E-8				Affymetrix [NR] (imputed)	N
789	chr6	26828358	26828359	rs190945449	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA	6p22.2	NR	rs190945449-?	NR	6E-8		0.0776	[0.05-0.106] unit decrease	Illumina [at least 560000] (imputed)	N
789	chr6	26843516	26843517	rs57440165	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Major depressive disorder (MTAG)	119,754 European ancestry individuals	NA			rs57440165-?	NR	6E-16				NR [2625067]	N
789	chr6	26843516	26843517	rs57440165	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA		GUSBP2	rs57440165-A	0.921	4E-15		0.0603	[0.045-0.075] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
789	chr6	26849097	26849098	rs71276077	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fish- and plant-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	6p22.2	BTN3A2, BTN2A2, BTN3A1, BTN3A3, BTN2A1, BTN1A1, HMGN4, ABT1, ZNF322, HIST1H2BJ, HIST1H2AG, HIST1H2BK, HIST1H4I, HIST1H2AH, POM121L2	rs71276077-?	NR	3E-8	(female)	0.0248742	[0.016-0.034] unit increase	Affymetrix [25921788] (imputed)	N
789	chr6	26851414	26851415	rs77666565	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	6p22.2	NR	rs77666565-G	0.082505	9E-18		0.09859042	[0.076-0.121] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
790	chr6	26893328	26893329	rs9366673	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.2	GUSBP2	rs9366673-C	NR	2E-12		7.032	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
790	chr6	26896364	26896365	rs559408609	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	126,151 East Asian ancestry individuals	NA	6p22.2	NR	rs559408609-A	0.98667	1E-9		0.12782	[0.086-0.169] SD units decrease	Affymetrix, Illumina [16289083] (imputed)	N
790	chr6	26903584	26903585	rs71557378	34861974	Mullins N	2021-09-09	Biol Psychiatry	Dissecting the Shared Genetic Architecture of Suicide Attempt, Psychiatric Disorders, and Known Risk Factors.	Suicide attempt	26,590 European ancestry cases, 492,022 European ancestry controls	NA	6p22.2		rs71557378-T	0.896	1E-8		1.1023	[1.07-1.14]	Affymetrix, Illumina [7700000] (imputed)	N
790	chr6	26907830	26907831	rs9379945	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	6p22.2	GUSBP2	rs9379945-T	NR	3E-10		0.02720178	[0.019-0.036] unit decrease	Affymetrix [NR]	N
790	chr6	26908014	26908014	rs372591769	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.2	GUSBP2	rs372591769-CT	NR	4E-11		0.02581	[0.018-0.033] unit decrease	Affymetrix [323858] (imputed)	N
790	chr6	26908014	26908014	rs372591769	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.2	GUSBP2	rs372591769-CT	NR	1E-11		0.0265648	[0.019-0.034] unit decrease	Affymetrix [127266] (imputed)	N
790	chr6	26908014	26908014	rs372591769	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6p22.2	GUSBP2	rs372591769-CT	NR	6E-9		0.0224745	[0.015-0.03] unit decrease	Affymetrix [321114] (imputed)	N
790	chr6	26908014	26908014	rs372591769	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p22.2	GUSBP2	rs372591769-CT	NR	1E-9		0.0236396	[0.016-0.031] unit decrease	Affymetrix [323858] (imputed)	N
790	chr6	26914999	26915000	rs62402013	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	6p22.2	NR	rs62402013-G	NR	4E-11		1.0752687	[NR]	Illumina [7158791] (imputed)	N
790	chr6	26922237	26922238	rs4476823	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.2	GUSBP2	rs4476823-C	NR	5E-8		0.0171145	[0.011-0.023] unit increase	Affymetrix [323858] (imputed)	N
790	chr6	26922237	26922238	rs4476823	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.2	GUSBP2	rs4476823-C	NR	2E-8		0.0177456	[0.012-0.024] unit increase	Affymetrix [127266] (imputed)	N
790	chr6	26922237	26922238	rs4476823	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6p22.2	GUSBP2	rs4476823-C	NR	4E-14		0.0234878	[0.017-0.03] unit increase	Affymetrix [321114] (imputed)	N
790	chr6	26922237	26922238	rs4476823	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p22.2	GUSBP2	rs4476823-C	NR	5E-9		0.0182099	[0.012-0.024] unit increase	Affymetrix [323858] (imputed)	N
790	chr6	26923098	26923099	rs9348739	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p22.2	ABT1, BTN1A1, BTN2A1, BTN2A2, BTN2A3P, BTN3A1, BTN3A2, BTN3A3, GUSBP2, HCG11, HIST1H2AG, HIST1H2AH, HIST1H2BJ, HIST1H2BK, HIST1H4I, HMGN4, LINC00240, LOC100270746, LOC285819, MIR3143, PRSS16, ZNF322	rs9348739-?		5E-17		1.1363636	[1.1-1.16]	Affymetrix, Illumina [NR]	N
790	chr6	26927601	26927602	rs80264589	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	6p22.2	NR	rs80264589-A	0.07	5E-11		1.2	[1.14-1.26]	Illumina [8468885] (imputed)	N
790	chr6	26927601	26927602	rs80264589	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	6p22.2	LINC00240	rs80264589-A	NR	8E-14		0.036985867	[0.027-0.047] unit increase	Affymetrix [NR]	N
790	chr6	26927601	26927602	rs80264589	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	6p22.2	LINC00240	rs80264589-A	0.079160056	1E-8		1.129989	[1.083615797-1.178346716]	Illumina [10439017] (imputed)	N
790	chr6	26942026	26942027	rs9393777	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	6p22.2	LINC00240	rs9393777-T	NR	1E-9		0.02558455	[0.017-0.034] unit decrease	Affymetrix [NR]	N
790	chr6	26942145	26942146	rs66975207	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Help-seeking from a psychiatrist	36,286 British ancestry cases, 297,126 British ancestry controls	NA	6p22.2	NR	rs66975207-A	0.889	1E-9		1.081081	NR	NR [5276842] (imputed)	N
790	chr6	26942145	26942146	rs66975207	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p22.2	NR	rs66975207-C	0.1059	7E-9		0.0111	[0.0074-0.0148] unit decrease	NR [7666894] (imputed)	N
790	chr6	26946686	26946687	rs35869525	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA	6p22.2	NR	rs35869525-?	NR	2E-7		0.0667	[0.041-0.092] unit decrease	Illumina [at least 560000] (imputed)	N
790	chr6	26949671	26949672	rs34816374	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in ever smokers	23,223 European ancestry cases,  16,964 European ancestry controls	NA	6p22.2	LINC00240	rs34816374-G	0.079913281	5E-7		1.1463856	[1.086716556-1.209330708]	Illumina [10439017] (imputed)	N
790	chr6	26961279	26961280	rs34546498	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p22.2	NR	rs34546498-T	0.0846	9E-10	(EA)	0.0747	[0.051-0.099] unit decrease	Illumina [~ 11800000] (imputed)	N
790	chr6	26961760	26961761	rs9368481	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p22.2	ABT1, GUSBP2, HIST1H2AG, HIST1H2AH, HIST1H2BJ, HIST1H2BK, HIST1H4I, LINC00240, LOC100270746, MIR3143, ZNF322	rs9368481-?		5E-8		1.0638298	[1.04-1.09]	Affymetrix, Illumina [NR]	N
790	chr6	26977951	26977952	rs9717913	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.2	LINC00240	rs9717913-T	NR	2E-12		0.0311771	[0.022-0.04] unit decrease	Affymetrix [127266] (imputed)	N
790	chr6	26979765	26979765	rs374598428	32358547	Persyn E	2020-05-01	Nat Commun	Genome-wide association study of MRI markers of cerebral small vessel disease in 42,310 participants.	White matter integrity (fractional anisotropy)	17,663 European ancestry individuals	NA	6p22.2	LINC00240, VN1R12P	rs374598428-CAAAGAGGAGCTGGT	0.141212	2E-8		0.347015	[0.23-0.47] unit increase	Affymetrix [NR] (imputed)	N
790	chr6	26993576	26993577	rs12215583	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.2	LINC00240	rs12215583-T	NR	4E-9		0.0396486	[0.026-0.053] unit decrease	Affymetrix [321016] (imputed)	N
790	chr6	26999844	26999845	rs13217285	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Myopia (age of diagnosis)	104,293 European ancestry individuals	NA	6p22.2	NR	rs13217285-T	0.1023	1E-8		0.0647	[0.042-0.087] unit decrease	Illumina [~ 10600000] (imputed)	N
791	chr6	27001054	27001055	rs13191659	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Liver iron content	32,858 European ancestry individuals	NA	6p22.2	HIST1H2BJ	rs13191659-?	NR	2E-135		0.34	NR mg/g increase	Affymetrix [9390170] (imputed)	N
791	chr6	27001054	27001055	rs13191659	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	6p22.2		rs13191659-C	0.911	2E-264		0.66	[-0.7--0.63] % decrease	Affymetrix [NR] (imputed)	N
791	chr6	27001054	27001055	rs13191659	28334935	Raffield LM	2017-05-15	Hum Mol Genet	Genome-wide association study of iron traits and relation to diabetes in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL): potential genomic intersection of iron and glucose regulation?	Iron status biomarkers (transferrin saturation)	12,589 Hispanic/Latino individuals	NA	6p22.2	LINC00240, HIST1H2BJ	rs13191659-C	NR	2E-8		0.26	[0.17-0.35] unit decrease	Illumina [27700000] (imputed)	N
791	chr6	27001054	27001055	rs13191659	28334935	Raffield LM	2017-05-15	Hum Mol Genet	Genome-wide association study of iron traits and relation to diabetes in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL): potential genomic intersection of iron and glucose regulation?	Iron status biomarkers (total iron binding capacity)	12,586 Hispanic/Latino individuals	NA	6p22.2	LINC00240, HIST1H2BJ	rs13191659-C	NR	2E-8		0.312	[0.2-0.42] unit increase	Illumina [27700000] (imputed)	N
791	chr6	27001054	27001055	rs13191659	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Diastolic blood pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	6p22.2	HLA	rs13191659-G	0.085887551	1E-7		0.2996	[0.19-0.41] unit increase	Affymetrix [~ 9800000] (imputed)	N
791	chr6	27004097	27004098	rs57713596	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	6p22.2	NR	rs57713596-T	0.128434193837032	2E-17		0.01893225	[0.015-0.023] unit decrease	NR [NR]	N
791	chr6	27004097	27004098	rs57713596	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	6p22.2	NR	rs57713596-T	0.128434193837032	1E-16		0.015527169	[0.012-0.019] unit decrease	NR [NR]	N
791	chr6	27004097	27004098	rs57713596	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	6p22.2	NR	rs57713596-T	0.128434193837032	1E-17		0.012172057	[0.0094-0.015] unit decrease	NR [NR]	N
791	chr6	27004097	27004098	rs57713596	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	6p22.2	NR	rs57713596-T	0.13736	4E-8		5.47	z score decrease	NR [10847151] (imputed)	N
791	chr6	27005839	27005840	rs7757680	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p22.2	VN1R12P	rs7757680-C	NR	3E-11		0.0349774	[0.025-0.045] unit decrease	Affymetrix [323123] (imputed)	N
791	chr6	27005929	27005929	rs563894686	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris color (L* coordinate)	329 South Asian ancestry individuals		6p22.2	intergenic	rs563894686-TTATTATATATAACATATTATATATAATACA	0.573718	8E-6		0.361314	[0.21-0.52] unit increase	Illumina [640625] (imputed)	N
791	chr6	27007686	27007687	rs35741362	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	6p22.2	NR	rs35741362-C	0.127454248501703	2E-17		0.015077638	[0.012-0.019] unit decrease	NR [NR]	N
791	chr6	27007686	27007687	rs35741362	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	6p22.2	VN1R12P	rs35741362-T	NR	2E-18	(EA)	1.164	[1.13-1.2]	Illumina [6627481] (imputed)	N
791	chr6	27007686	27007687	rs35741362	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.2	VN1R12P	rs35741362-T	NR	1E-12		7.087	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
791	chr6	27021172	27021173	rs72838268	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking status (current vs never)	40,456 European ancestry current smokers, 13,511 African American current smokers, 2,920 Hispanic current smokers, 59,056 European ancestry mostly never smokers, 17,751 African American mostly never smokers, 7,195 Hispanic mostly never smokers	NA	6p22.2		rs72838268-A	NR	5E-8	(EA)	1.07	NR	Affymetrix [~ 79000000] (imputed)	N
791	chr6	27023080	27023081	rs12215241	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Sleep duration	384,317 European ancestry individuals	NA	6p22.2		rs12215241-A	0.2247	6E-10		0.01814	[0.012-0.024] unit decrease	Affymetrix, Illumina [10862567] (imputed)	N
791	chr6	27025280	27025281	rs12199218	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on Townsend deprivation index (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	6p22.2		rs12199218-?	NR	3E-9				NR [NR]	N
791	chr6	27028453	27028454	rs7761889	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p22.2	NR	rs7761889-T	0.098	1E-6	(IFNalpha_ABC_of_CD8p_T)			Illumina [5084123] (imputed)	N
791	chr6	27037079	27037080	rs13194491	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	6p22.2	LINC00240	rs13194491-T	0.0715	1E-19		0.0243	[0.019-0.03] unit decrease	Affymetrix, Illumina [33811881] (imputed)	N
791	chr6	27037079	27037080	rs13194491	19084217	Benyamin B	2008-12-17	Am J Hum Genet	Variants in TF and HFE explain approximately 40% of genetic variation in serum-transferrin levels.	Iron status biomarkers	459 European ancestry twin pairs	NA	6p22.2	HIST1H2BJ	rs13194491-?	NR	1E-8	(transferrin saturation)			Illumina [315887]	N
791	chr6	27042286	27042287	rs35526527	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.2	VN1R11P	rs35526527-A	NR	1E-12		0.0324805	[0.024-0.041] unit decrease	Affymetrix [323858] (imputed)	N
791	chr6	27046249	27046250	rs6940638	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	6p22.2	VN1R11P	rs6940638-A	NR	4E-9		0.020835118	[0.014-0.028] unit decrease	Affymetrix [NR]	N
791	chr6	27047255	27047256	rs6904071	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Neuroticism	170,911 European ancestry individuals	NA	6p22.2	NR	rs6904071-A	0.145	8E-7		0.024196656	[0.015-0.034] unit decrease	Affymetrix [up to 6544775] (imputed)	N
791	chr6	27050395	27050396	rs34388707	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder	16,823 European ancestry cases, 25,632 European ancestry controls	NA	6p22.2		rs34388707-?	NR	8E-9		1.0629	[1.04-1.08]	NR [NR]	N
791	chr6	27057078	27057079	rs2393911	25993607	de Moor MH	2015-05-20	JAMA Psychiatry	Meta-analysis of Genome-wide Association Studies for Neuroticism, and the Polygenic Association With Major Depressive Disorder.	Neuroticism	Up to 627 Cilento (founder/genetic isolate) individuals, up to 2,296 Erasmus Rucphen (founder/genetic isolate) individuals, up to 1,650 Orcadian (founder/genetic isolate) individuals, up to 909 Vis (founder/genetic isolate) individuals, up to 58,179 European ancestry individuals	Up to 9,786 European ancestry individuals	6p22.2	NR	rs2393911-T	NR	5E-7		0.039	[0.023-0.055] unit decrease	Affymetrix, Illumina, Perlegen [6949614] (imputed)	N
791	chr6	27059442	27059443	rs926300	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.2	VN1R11P	rs926300-A	NR	5E-12		6.902	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
791	chr6	27067656	27067657	rs35657082	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular volume	22,267 Amish, White ancestry individuals, 447 Asian ancestry individuals, 12,285 Black individuals, 13,831 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	6p22.2		rs35657082-T	NR	9E-16		0.72	[0.54-0.9] unit increase	Illumina [97506867]	N
791	chr6	27067656	27067657	rs35657082	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular hemoglobin	20,714 Amish, White ancestry individuals, 447 Asian ancestry individuals, 11,246 Black individuals, 13,834 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	6p22.2		rs35657082-T	NR	1E-25		0.38	[0.3-0.46] unit increase	Illumina [94681438]	N
791	chr6	27067656	27067657	rs35657082	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Hemoglobin	33,325 Amish, White ancestry individuals, 653 Asian ancestry individuals, 14,454 Black individuals, 14,029 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	6p22.2		rs35657082-T	NR	1E-14		0.13	[0.091-0.169] unit increase	Illumina [110351653]	N
791	chr6	27072541	27072542	rs55834529	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Bipolar disorder (MTAG)	1,450,972 European ancestry individuals	NA			rs55834529-?	NR	6E-17				NR [2625067]	N
791	chr6	27072541	27072542	rs55834529	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA		NR	rs55834529-G	0.1059	3E-9		0.0114	[0.0077-0.0151] unit decrease	NR [7666894] (imputed)	N
791	chr6	27072541	27072542	rs55834529	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls		NR	rs55834529-G	0.0874	3E-9	(EA)	0.071	[0.048-0.094] unit decrease	Illumina [~ 11800000] (imputed)	N
791	chr6	27072541	27072542	rs55834529	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA		NR	rs55834529-?	NR	1E-6		0.0635	[0.038-0.089] unit decrease	Illumina [at least 560000] (imputed)	N
791	chr6	27072541	27072542	rs55834529	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA		NR	rs55834529-A	NR	9E-27		1.24	[NR]	Illumina [7158791] (imputed)	N
791	chr6	27091382	27091383	rs75040706	33204752	Butler-Laporte G	2020-09-24	Open Forum Infect Dis	Genetic Determinants of Antibody-Mediated Immune Responses to Infectious Diseases Agents: A Genome-Wide and HLA Association Study.	Merkel cell polyomavirus VP1 antibody levels	5,915 White British ancestry individuals	NA	6p22.1	RP1, 88C11.7	rs75040706-A	0.97	3E-8		0.3	[0.19-0.41] unit increase	NR [25472218] (imputed)	N
791	chr6	27091660	27091661	rs66462181	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	6p22.1	NR	rs66462181-T	0.0685885	5E-8		0.076999195	[0.049-0.105] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
791	chr6	27103579	27103580	rs2022272	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	65,967 individuals	NA	6p22.1	NR	rs2022272-?		4E-8				NR [8377093]	N
791	chr6	27122443	27122444	rs71559014	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Liver iron content	32,858 European ancestry individuals	NA	6p22.1	HIST1H2AH	rs71559014-?	NR	5E-112	(conditional)	0.315	NR mg/g increase	Affymetrix [9390170] (imputed)	N
791	chr6	27122443	27122444	rs71559014	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	6p22.1	PRSS16	rs71559014-?	NR	1E-18		0.0405	[0.032-0.049] unit decrease	Affymetrix [5701386] (imputed)	N
791	chr6	27122443	27122444	rs71559014	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	6p22.1	intergenic	rs71559014-A	0.9285	4E-9		0.0331	[0.022-0.044] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
791	chr6	27122443	27122444	rs71559014	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	6p22.1	intergenic	rs71559014-A	0.9285	1E-12		0.0399	[0.029-0.051] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
791	chr6	27122443	27122444	rs71559014	28334935	Raffield LM	2017-05-15	Hum Mol Genet	Genome-wide association study of iron traits and relation to diabetes in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL): potential genomic intersection of iron and glucose regulation?	Iron status biomarkers (total iron binding capacity)	12,586 Hispanic/Latino individuals	NA	6p22.1	MIR3143, PRSS16	rs71559014-A	NR	5E-8		0.296	[0.19-0.4] unit increase	Illumina [27700000] (imputed)	N
791	chr6	27124903	27124904	rs61240102	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	6p22.1	MIR3143	rs61240102-C	NR	7E-10		0.024484178	[0.017-0.032] unit increase	Affymetrix [NR]	N
792	chr6	27139047	27139048	rs6914824	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	6p22.1	MIR3143	rs6914824-T	0.1681	3E-9		0.2089	[0.14-0.28] mmHg increase	Affymetrix [NR] (imputed)	N
792	chr6	27141903	27141904	rs35768595	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	6p22.1	NR	rs35768595-T	0.06	8E-11		1.2	[1.14-1.26]	Illumina [8468885] (imputed)	N
792	chr6	27141903	27141904	rs35768595	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	6p22.1	NR	rs35768595-C	0.0685885	3E-18		0.1090284	[0.085-0.134] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
792	chr6	27141903	27141904	rs35768595	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Squamous cell lung carcinoma	7,426 European ancestry cases, 55,627 European ancestry controls	NA	6p22.1	MIR3143, PRSS16	rs35768595-T	0.076010276	9E-10		1.2374042	[1.155936353-1.324613723]	Illumina [10439017] (imputed)	N
792	chr6	27141903	27141904	rs35768595	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in ever smokers	23,223 European ancestry cases,  16,964 European ancestry controls	NA	6p22.1	MIR3143, PRSS16	rs35768595-T	0.075874027	1E-7		1.1596087	[1.098152503-1.224504294]	Illumina [10439017] (imputed)	N
792	chr6	27141903	27141904	rs35768595	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	6p22.1	MIR3143, PRSS16	rs35768595-T	0.076663203	5E-9		1.1351829	[1.088003741-1.184407893]	Illumina [10439017] (imputed)	N
792	chr6	27143882	27143883	rs13194053	19571811	Purcell SM	2009-07-01	Nature	Common polygenic variation contributes to risk of schizophrenia and bipolar disorder.	Schizophrenia	3,322 European ancestry cases, 3,587 European ancestry controls	4,692 European ancestry cases, 15,493 European ancestry controls	6p22.1	MHC	rs13194053-T	0.86	1E-8		1.22		Affymetrix [739995]	N
792	chr6	27143882	27143883	rs13194053	19571809	Shi J	2009-07-01	Nature	Common variants on chromosome 6p22.1 are associated with schizophrenia.	Schizophrenia	2,681 European ancestry cases, 2,653 European ancestry controls, 1,286 African American cases, 973 African American controls	5,327 European ancestry cases, 16,424 European ancestry controls	6p22.1	HIST1H2BJ, SLC17A1, BTN3A2, BTN2A2, BTN3A1, HIST1H2AG, POM121L2, ZNF184, PRSS16, SLC17A3	rs13194053-T	0.82	1E-8	(EA)	1.28	[NR]	Affymetrix [up to 843798]	N
792	chr6	27150598	27150599	rs911186	30626913	Amare AT	2019-01-09	Mol Psychiatry	Bivariate genome-wide association analyses of the broad depression phenotype combined with major depressive disorder, bipolar disorder or schizophrenia reveal eight novel genetic loci for depression.	Broad depression or schizophrenia	9,240 European ancestry broad depression cases, 9,519 European ancestry broad depression controls, 51,258 European ancestry individuals, 36,989 European and East Asian ancestry schizophrenia cases, 113,075 European and East Asian ancestry schizophrenia controls	322,580 individuals	6p22.1	MIR3143	rs911186-A	0.23	4E-18				Affymetrix, Illumina [at least 918921] (imputed)	N
792	chr6	27150598	27150599	rs911186	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p22.1	ABT1, BTN1A1, BTN2A1, GUSBP2, HCG11, HIST1H2AG, HIST1H2AH, HIST1H2BJ, HIST1H2BK, HIST1H4I, HMGN4, LINC00240, LOC100270746, LOC285819, MIR3143, PRSS16, ZNF322	rs911186-A		5E-13		1.09	[1.07-1.12]	Affymetrix, Illumina [NR]	N
792	chr6	27151308	27151309	rs12210905	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p22.1	HIST1H2AH	rs12210905-A	0.8808	8E-6	(EA, women)	0.0334	[0.019-0.048] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
792	chr6	27151308	27151309	rs12210905	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p22.1	HIST1H2AH	rs12210905-A	0.8808	1E-8	(EA)	0.0332	[0.022-0.045] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
792	chr6	27153983	27153984	rs34569203	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	6p22.1	NR	rs34569203-C	NR	3E-8		0.01694	[0.011-0.023] unit decrease	Affymetrix [10847151] (imputed)	N
792	chr6	27155292	27155293	rs145818385	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p22.1	NR	rs145818385-G	0.0122	2E-8	(SDHA)	0.3058	NR unit increase	Illumina [1671387] (imputed)	N
792	chr6	27155622	27155623	rs858975	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	RP11-209A2.1	rs858975-G	NR	6E-16		0.034899	[0.026-0.043] unit decrease	Affymetrix [321016] (imputed)	N
792	chr6	27156272	27156273	rs1102560	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p22.1	RP11-209A2.1	rs1102560-C	NR	3E-8		0.0216263	[0.014-0.029] unit decrease	Affymetrix [323123] (imputed)	N
792	chr6	27158032	27158033	rs6934329	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder	16,823 European ancestry cases, 25,632 European ancestry controls	NA	6p22.1		rs6934329-?	NR	1E-9		1.06492	[1.04-1.09]	NR [NR]	N
792	chr6	27163455	27163456	rs35909544	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Myopia (age of diagnosis)	104,293 European ancestry individuals	NA	6p22.1	NR	rs35909544-A	0.1042	4E-8		0.0625	[0.04-0.085] unit decrease	Illumina [~ 10600000] (imputed)	N
792	chr6	27163851	27163852	rs858980	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	RP11-209A2.1	rs858980-C	NR	3E-12		0.0249691	[0.018-0.032] unit decrease	Affymetrix [321016] (imputed)	N
792	chr6	27174556	27174557	rs17737641	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	6p22.1		rs17737641-?	NR	2E-12		0.0582	unit decrease	NR [NR]	N
792	chr6	27175295	27175296	rs7766328	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Longevity	up to 482,000 European ancestry individuals	NA	6p22.1	NR	rs7766328-A	NR	2E-6		0.0468	[0.027-0.066] unit decrease	Illumina [~ 540852]	N
792	chr6	27176627	27176628	rs34817112	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Body mass index variance	346,393 European ancestry individuals	NA	6p22.1	PRSS16	rs34817112-?	NR	8E-17				NR [5554549] (imputed)	N
792	chr6	27176627	27176628	rs34817112	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Body mass index	346,393 European ancestry individuals	NA	6p22.1	PRSS16	rs34817112-?	NR	4E-8				NR [5554549] (imputed)	N
792	chr6	27185791	27185792	rs3800307	33832965	Sandoval-Plata G	2021-04-08	Ann Rheum Dis	Variants in urate transporters, ADH1B, GCKR and MEPE genes associate with transition from asymptomatic hyperuricaemia to gout: results of the first gout versus asymptomatic hyperuricaemia GWAS in Caucasians using data from the UK Biobank.	Gout	7,049 European ancestry cases, 64,424 European ancestry controls	NA	6p22.1	PRSS16	rs3800307-A	0.21	5E-9		1.15	[1.10-1.20]	Affymetrix [710030]	N
792	chr6	27187918	27187919	rs4713071	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p22.1	intergenic	rs4713071-A		3E-11		1.09	[1.07-1.12]	Affymetrix, Illumina [NR]	N
792	chr6	27198167	27198167	rs113074827	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	PRSS16	rs113074827-TA	NR	7E-9		0.0200705	[0.013-0.027] unit decrease	Affymetrix [321016] (imputed)	N
792	chr6	27199327	27199327	rs550539952	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	PRSS16	rs550539952-CAAAAAAAAAAAA	NR	8E-11		0.0246049	[0.017-0.032] unit decrease	Affymetrix [321016] (imputed)	N
792	chr6	27216698	27216699	rs5030965	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6p22.1		rs5030965-?	NR	8E-6		1.11361	[1.07-1.16]	NR [685523]	N
792	chr6	27220889	27220890	rs2295603	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6p22.1	PRSS16	rs2295603-G	NR	6E-10		0.0191747	[0.013-0.025] unit decrease	Affymetrix [321114] (imputed)	N
792	chr6	27223966	27223970	rs35237909	28334935	Raffield LM	2017-05-15	Hum Mol Genet	Genome-wide association study of iron traits and relation to diabetes in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL): potential genomic intersection of iron and glucose regulation?	Iron status biomarkers (transferrin saturation)	12,589 Hispanic/Latino individuals	NA	6p22.1	PRSS16	rs35237909-CTCTA	NR	2E-8		0.258	[0.17-0.35] unit decrease	Illumina [27700000] (imputed)	N
792	chr6	27224587	27224588	rs61740410	28334935	Raffield LM	2017-05-15	Hum Mol Genet	Genome-wide association study of iron traits and relation to diabetes in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL): potential genomic intersection of iron and glucose regulation?	Iron status biomarkers (total iron binding capacity)	12,586 Hispanic/Latino individuals	NA	6p22.1	PRSS16	rs61740410-G	NR	1E-7		0.291	[0.18-0.4] unit increase	Illumina [27700000] (imputed)	N
792	chr6	27232394	27232395	rs6456771	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6p22.1	XXbac-BPGBPG24O18.1	rs6456771-A	NR	1E-8		0.0188794	[0.012-0.025] unit decrease	Affymetrix [321114] (imputed)	N
792	chr6	27234972	27234973	rs201951562	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycoprotein acetyls levels	115,082 European ancestry individuals	NA	6p22.1		rs201951562-A	0.722294	9E-9		0.0271958	[0.018-0.036] unit decrease	NR [11722792] (imputed)	N
792	chr6	27235524	27235525	rs62401089	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p22.1	NR	rs62401089-T	0.01045	2E-8	(SEPT11)	0.03856	NR unit decrease	Illumina [1671387] (imputed)	N
792	chr6	27235865	27235866	rs6915678	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Pork consumption	335,576 European ancestry individuals	NA	6p22.1	LRRC16A, SCGN, SLC17A4, SLC17A1, SLC17A3	rs6915678-?	NR	8E-9		0.00241511	[-0.00254-0.00737] unit increase	Affymetrix [25921788] (imputed)	N
792	chr6	27235865	27235866	rs6915678	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Oily fish consumption	335,576 European ancestry individuals	NA	6p22.1	LRRC16A, SCGN, SLC17A4, SLC17A1, SLC17A3	rs6915678-?	NR	8E-9		0.0145032	[0.0096-0.0194] unit increase	Affymetrix [25921788] (imputed)	N
792	chr6	27236047	27236048	rs3800314	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fish- and plant-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	6p22.1	LRRC16A, SCGN, SLC17A4, SLC17A1, SLC17A3, SLC17A2, TRIM38, HIST1H1A, HIST1H3A, HIST1H4A, HIST1H4B, HIST1H3B, HIST1H2AB, HIST1H2BB, HIST1H3C, HIST1H1C, HFE, HIST1H4C, HIST1H1T, HIST1H2BC, HIST1H2AC, HIST1H2BD, HIST1H2BE, HIST1H4D, HIST1H3D, HIST1H2AD, HIST1H2BF, HIST1H4E, HIST1H3G, HIST1H2BI, BTN3A2, BTN2A2, BTN3A1, BTN3A3, BTN2A1, BTN1A1, HMGN4, ABT1, ZNF322, HIST1H2BJ, HIST1H2AG, HIST1H2BK, HIST1H4I, HIST1H2AH, PRSS16, POM121L2, ZNF391, ZNF184, HIST1H2BL, HIST1H2AI, HIST1H3H, HIST1H2AJ, HIST1H2BM, HIST1H4J, HIST1H4K, HIST1H2AK, HIST1H2BN, HIST1H2AL, HIST1H1B, HIST1H3I, HIST1H4L, HIST1H3J, HIST1H2AM, HIST1H2BO, OR2B2, OR2B6, ZNF165, ZSCAN16, ZKSCAN8, ZSCAN9, ZKSCAN4, NKAPL, PGBD1, ZSCAN31, ZKSCAN3, ZSCAN12, ZSCAN23, GPX6, SCAND3, TRIM27, C6orf100, ZNF311, OR2W1, OR2B3, OR2J1, OR2J3, OR2J2, OR14J1, OR5V1, OR12D3, OR12D2, OR11A1, OR10C1, OR2H1, MAS1L, UBD, GABBR1, OR2H2	rs3800314-?	NR	8E-9		0.0140442	[0.0093-0.0188] unit increase	Affymetrix [25921788] (imputed)	N
792	chr6	27237362	27237363	rs36034627	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	XXbac-BPGBPG24O18.1	rs36034627-T	NR	3E-10		0.024141	[0.017-0.032] unit decrease	Affymetrix [323858] (imputed)	N
792	chr6	27237362	27237363	rs36034627	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	XXbac-BPGBPG24O18.1	rs36034627-T	NR	5E-10		0.0239241	[0.016-0.031] unit decrease	Affymetrix [127266] (imputed)	N
792	chr6	27244242	27244243	rs540860509	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p22.1		rs540860509-?	NR	1E-10		0.0468704	[0.034-0.06] unit decrease	Affymetrix [20259828] (imputed)	N
792	chr6	27245339	27245340	rs115091345	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	6p22.1	NR	rs115091345-C	0.0291430901452219	6E-9		0.01585996	[0.011-0.021] unit increase	NR [NR]	N
792	chr6	27245339	27245340	rs115091345	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	6p22.1	NR	rs115091345-C	0.0291430901452219	1E-8		0.019943643	[0.013-0.027] unit increase	NR [NR]	N
792	chr6	27245339	27245340	rs115091345	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	6p22.1	NR	rs115091345-C	0.0291430901452219	7E-9		0.02593482	[0.017-0.035] unit increase	NR [NR]	N
792	chr6	27245339	27245340	rs115091345	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	6p22.1	NR	rs115091345-C	0.0291430901452219	6E-9		0.016792217	[0.011-0.022] unit increase	NR [NR]	N
792	chr6	27248043	27248044	rs56044565	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	6p22.1	Intergenic	rs56044565-C	0.8945	8E-9	(MTAG)	0.0168	[0.011-0.022] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
792	chr6	27248772	27248773	rs6909479	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Schizophrenia (MTAG)	940,613 European ancestry individuals	NA			rs6909479-?	NR	4E-8				NR [2625067]	N
792	chr6	27248930	27248931	rs6932590	19571808	Stefansson H	2009-07-01	Nature	Common variants conferring risk of schizophrenia.	Schizophrenia	2,663 European ancestry cases, 13,498 European ancestry controls	10,282 European ancestry cases, 21,093 European ancestry controls	6p22.1	MHC, PRSS16	rs6932590-T	0.78	1E-12		1.16	[NR]	Illumina [314868]	N
792	chr6	27249685	27249686	rs72839445	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6p22.1	POM121L2	rs72839445-A	NR	1E-8		0.028202	[0.019-0.038] unit decrease	Affymetrix [321114] (imputed)	N
792	chr6	27254842	27254843	rs6913724	32080354	Rasmussen ER	2020-02-21	Pharmacogenomics J	Genome-wide association study of angioedema induced by angiotensin-converting enzyme inhibitor and angiotensin receptor blocker treatment.	Angioedema in response to angiotensin-converting enzyme inhibitor and/or angiotensin receptor blocker	172 European ancestry cases, 1 case, 4,890 European ancestry controls	NA	6p22.1	NR	rs6913724-A	0.432	2E-7		1.804	[1.446-2.252]	Illumina [7585599] (imputed)	N
792	chr6	27254966	27254967	rs13217239	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	6p22.1	NR	rs13217239-C	0.364479243878233	5E-10		0.007957174	[0.0055-0.0105] unit decrease	NR [NR]	N
792	chr6	27254966	27254967	rs13217239	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	6p22.1	TRNAI28P	rs13217239-T	NR	5E-14	(EA)	1.091	[1.07-1.11]	Illumina [6627481] (imputed)	N
792	chr6	27254966	27254967	rs13217239	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	6p22.1	Intergenic	rs13217239-T	0.6537	8E-12		0.014	[0.01-0.018] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
792	chr6	27254966	27254967	rs13217239	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	6p22.1	NR	rs13217239-T	NR	4E-15		1.09	[NR]	Illumina [7158791] (imputed)	N
792	chr6	27255237	27255238	rs9348758	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	6p22.1	POM121L2	rs9348758-T	0.9179	2E-6		0.063	[0.037-0.089] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
792	chr6	27255237	27255238	rs9348758	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference	1,254 whole genome sequenced European ancestry individuals, 3,074 whole genome sequenced individuals, 29,716 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 701 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,050 Mylopotamos (founder/genetic isolate) individuals, 883 Pomak (founder/genetic isolate) individuals	205,909 European ancestry individuals	6p22.1	POM121L2	rs9348758-T	0.9181	4E-6		0.081	[0.047-0.115] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
792	chr6	27256345	27256346	rs3823427	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	POM121L2	rs3823427-C	NR	6E-10		6.184	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
792	chr6	27258409	27258410	rs72839448	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	POM121L2	rs72839448-T	NR	1E-13		0.0404142	[0.03-0.051] unit decrease	Affymetrix [321016] (imputed)	N
792	chr6	27259307	27259308	rs9379971	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6p22.1	POM121L2	rs9379971-A	NR	3E-8		0.0181555	[0.012-0.025] unit decrease	Affymetrix [321114] (imputed)	N
792	chr6	27259791	27259792	rs76736394	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	6p22.1	OR2B6	rs76736394-T	0.0273646	2E-8		5.6	z score decrease	NR [10847151] (imputed)	N
792	chr6	27260691	27260692	rs112369919	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	6p22.1	Intergenic	rs112369919-C	0.1168	8E-13	(MTAG)	0.0184	[0.013-0.023] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
792	chr6	27260691	27260692	rs112369919	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6p22.1	Intergenic	rs112369919-C	0.1072	6E-11	(MTAG)	0.0138	[0.0097-0.0179] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
792	chr6	27260691	27260692	rs112369919	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	6p22.1	Intergenic	rs112369919-C	0.1056	2E-8	(MTAG)	0.0208	[0.014-0.028] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
792	chr6	27261323	27261324	rs7746199	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	65,967 individuals	NA	6p22.1	NR	rs7746199-?		7E-23				NR [8377093]	N
792	chr6	27261323	27261324	rs7746199	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	POM121L2	rs7746199-T	NR	2E-9		6.03	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
792	chr6	27261323	27261324	rs7746199	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p22.1	GUSBP2, HIST1H2AG, HIST1H2AH, HIST1H2BJ, HIST1H2BK, HIST1H4I, LINC00240, LOC100270746, MIR3143, POM121L2, PRSS16, VN1R10P, ZNF204P, ZNF391	rs7746199-?		1E-20		1.1363636	[1.1-1.16]	Affymetrix, Illumina [NR]	N
792	chr6	27261323	27261324	rs7746199	28077804	Ben-Avraham D	2017-01-10	Aging (Albany NY)	The complex genetics of gait speed: genome-wide meta-analysis approach.	Gait speed in old age	31,478 European ancestry older adults	2,588 European ancestry older adults	6p22.1	POM121L2	rs7746199-C	NR	7E-7		0.0109	[0.0066-0.0152] m/sec increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
793	chr6	27265826	27265827	rs62401095	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p22.1	NR	rs62401095-T	0.01045	2E-8	(SEPT11)	0.03856	NR unit decrease	Illumina [1671387] (imputed)	N
793	chr6	27265939	27265940	rs13211166	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	6p22.1	NR	rs13211166-A	0.187869453165633	2E-10		0.0126990825	[0.0088-0.0166] unit decrease	NR [NR]	N
793	chr6	27270260	27270261	rs2393923	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fish- and plant-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	6p22.1	BTN3A2, BTN2A2, BTN3A1, BTN3A3, BTN2A1, BTN1A1, HMGN4, ABT1, ZNF322, HIST1H2BJ, HIST1H2AG, HIST1H2BK, HIST1H4I, HIST1H2AH, POM121L2	rs2393923-?	NR	9E-9	(female)	0.0202222	[0.013-0.027] unit increase	Affymetrix [25921788] (imputed)	N
793	chr6	27271589	27271590	rs147121091	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma and major depressive disorder	46,802 European ancestry asthma cases, 59,851 European ancestry major depressive disorder cases, 460,635 European ancestry controls	NA	6p22.1	LINC01012, LOC100131289, POM121L2, PRSS16, ZNF184, ZNF204P, ZNF391, VN1R10P	rs147121091-?	NR	3E-8				Affymetrix [up to 13554551] (imputed)	N
793	chr6	27274833	27274834	rs56114371	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p22.1	NR	rs56114371-T	0.0885	2E-9	(EA)	0.071	[0.048-0.094] unit decrease	Illumina [~ 11800000] (imputed)	N
793	chr6	27277050	27277051	rs41269255	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	6p22.1	NR	rs41269255-T	0.114328801895409	2E-8		0.008494565	[0.0055-0.0115] unit increase	NR [NR]	N
793	chr6	27278019	27278020	rs16897515	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p22.1	POM121L2	rs16897515-A		2E-11		0.019	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
793	chr6	27278019	27278020	rs16897515	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	6p22.1	POM121L2	rs16897515-A	NR	7E-9		0.022136277	[0.015-0.03] unit increase	Affymetrix [NR]	N
793	chr6	27278019	27278020	rs16897515	23894747	Aberg KA	2013-02-01	JAMA Psychiatry	A comprehensive family-based replication study of schizophrenia genes.	Schizophrenia	11,185 European ancestry cases, 10,768 European ancestry controls	1,262 African American ancestry individuals, 2,740 European ancestry individuals, 2,296 Asian ancestry individuals	6p22.1	POM121L2	rs16897515-C	0.16	4E-7	(EA)	1.3	[NR]	NR [1085772] (imputed)	N
793	chr6	27283253	27283254	rs2893910	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	6p22.1	NR	rs2893910-T	0.187761735601194	6E-11		0.010247224	[0.0072-0.0133] unit decrease	NR [NR]	N
793	chr6	27283253	27283254	rs2893910	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	6p22.1	NR	rs2893910-T	0.187761735601194	5E-11		0.008625835	[0.0061-0.0112] unit decrease	NR [NR]	N
793	chr6	27289775	27289776	rs6923811	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p22.1	NR	rs6923811-C	0.33	2E-10		1.12	[1.08-1.15]	Affymetrix [9886854] (imputed)	N
793	chr6	27289775	27289776	rs6923811	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p22.1	NR	rs6923811-C	0.33	1E-11			[NR]	Affymetrix [9886854] (imputed)	N
793	chr6	27289775	27289776	rs6923811	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p22.1	NR	rs6923811-C	0.33	1E-10		1.09	[1.06-1.11]	Affymetrix [9886854] (imputed)	N
793	chr6	27289775	27289776	rs6923811	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p22.1	NR	rs6923811-C	0.33	3E-10			[NR]	Affymetrix [9886854] (imputed)	N
793	chr6	27289775	27289776	rs6923811	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in non-current smokers	16,488 European ancestry cases, 169,688 European ancestry controls	NA	6p22.1	NR	rs6923811-C	0.33	2E-10		1.09	[1.06-1.11]	Affymetrix [9886854] (imputed)	N
793	chr6	27289775	27289776	rs6923811	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in never smokers	8,631 European ancestry cases, 120,544 European ancestry controls	NA	6p22.1	NR	rs6923811-C	0.33	3E-10		1.12	[1.08-1.15]	Affymetrix [9886854] (imputed)	N
793	chr6	27289775	27289776	rs6923811	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Pork consumption	335,576 European ancestry individuals	NA	6p22.1	LRRC16A, SCGN, SLC17A4, SLC17A1	rs6923811-?	NR	2E-10		0.00155185	[-0.00358-0.00668] unit decrease	Affymetrix [25921788] (imputed)	N
793	chr6	27289775	27289776	rs6923811	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Oily fish consumption	335,576 European ancestry individuals	NA	6p22.1	LRRC16A, SCGN, SLC17A4, SLC17A1	rs6923811-?	NR	2E-10		0.0166177	[0.012-0.022] unit increase	Affymetrix [25921788] (imputed)	N
793	chr6	27289775	27289776	rs6923811	30271922	Clifton EAD	2018-05-03	Commun Biol	Genome-wide association study for risk taking propensity indicates shared pathways with body mass index.	Self-reported risk-taking behaviour	113,882 European ancestry cases, 322,354 European ancestry controls	NA	6p22.1	POM121L2	rs6923811-T	0.68	4E-10		1.027	[1.019-1.036]	Affymetrix [7736308] (imputed)	N
793	chr6	27289775	27289776	rs6923811	30181555	Strawbridge RJ	2018-09-04	Transl Psychiatry	Genetics of self-reported risk-taking behaviour, trans-ethnic consistency and relevance to brain gene expression.	Self-reported risk-taking behaviour	83,677 British ancestry cases, 244,662 British ancestry controls	2,764 South Asian ancestry cases, 3,139 African Caribbean ancestry cases, 16,169 European ancestry cases, 3,866 mixed ancestry cases, 4,267 South Asian ancestry controls, 4,341 African Caribbean ancestry controls, 31,814 European ancestry controls, 5,988 mixed ancestry controls	6p22.1	NR	rs6923811-T	0.67	5E-9		0.032	[0.022-0.042] unit increase	Affymetrix [NR] (imputed)	N
793	chr6	27296363	27296364	rs7744605	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p22.1		rs7744605-C	0.556	1E-16				Affymetrix [10369434] (imputed)	N
793	chr6	27298036	27298037	rs9393805	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6p22.1	VN1R10P	rs9393805-G	0.223783	3E-9		0.015835268	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
793	chr6	27300309	27300310	rs13212562	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	6p22.1	POM121L2, ZNF391	rs13212562-A	0.88	8E-30		11.3	z-score increase	Affymetrix [4314223] (imputed)	N
793	chr6	27300309	27300310	rs13212562	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	6p22.1	NR	rs13212562-G	0.110090504633362	7E-21		0.013752518	[0.011-0.017] unit decrease	NR [NR]	N
793	chr6	27300309	27300310	rs13212562	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	6p22.1	Intergenic	rs13212562-A	0.9	1E-18		0.0332	[0.026-0.041] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
793	chr6	27300309	27300310	rs13212562	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in ever smokers	23,223 European ancestry cases,  16,964 European ancestry controls	NA	6p22.1	VN1R10P, ZNF204P	rs13212562-G	0.094669537	1E-8		1.1549425	[1.099214514-1.213495931]	Illumina [10439017] (imputed)	N
793	chr6	27300309	27300310	rs13212562	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p22.1	ABT1, GUSBP2, HIST1H1B, HIST1H2AG, HIST1H2AH, HIST1H2AI, HIST1H2AJ, HIST1H2AK, HIST1H2AL, HIST1H2AM, HIST1H2BJ, HIST1H2BK, HIST1H2BL, HIST1H2BM, HIST1H2BN, HIST1H2BO, HIST1H3H, HIST1H3I, HIST1H3J, HIST1H4I, HIST1H4J, HIST1H4K, HIST1H4L, LINC00240, LINC01012, LOC100131289, LOC100270746, MIR3143, OR2B2, OR2B6, POM121L2, PRSS16, VN1R10P, ZNF184, ZNF204P, ZNF322, ZNF391	rs13212562-A		3E-16		1.14	[1.11-1.18]	Affymetrix, Illumina [NR]	N
793	chr6	27301511	27301512	rs56401801	33204752	Butler-Laporte G	2020-09-24	Open Forum Infect Dis	Genetic Determinants of Antibody-Mediated Immune Responses to Infectious Diseases Agents: A Genome-Wide and HLA Association Study.	Varicella zoster virus glycoproteins E and I antibody levels	7,595 White British ancestry individuals	NA	6p22.1	VN1R10P	rs56401801-T	0.833	7E-14		0.19	[0.14-0.24] unit decrease	NR [25472218] (imputed)	N
793	chr6	27301511	27301512	rs56401801	31212010	Cabana-Dominguez J	2019-06-15	Prog Neuropsychopharmacol Biol Psychiatry	Genome-wide association meta-analysis of cocaine dependence: Shared genetics with comorbid conditions.	Cocaine dependence	2,085 European ancestry cases, 4,293 European ancestry controls	NA	6p22.1	NR	rs56401801-A	NR	3E-6		0.3592	[0.21-0.51] unit decrease	Illumina [9290362] (imputed)	N
793	chr6	27303744	27303745	rs9368503	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	6p22.1	NR	rs9368503-A	0.489284	2E-8		0.0113895	[0.0074-0.0153] unit increase	NR [NR]	N
793	chr6	27309778	27309779	rs71537559	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6p22.1		rs71537559-G	0.88855	3E-8		0.0359585	[0.023-0.049] unit decrease	NR [11722792] (imputed)	N
793	chr6	27309778	27309779	rs71537559	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Squamous cell lung carcinoma	7,426 European ancestry cases, 55,627 European ancestry controls	NA	6p22.1	VN1R10P, ZNF204P	rs71537559-C	0.077421629	3E-11		1.2544878	[1.173163961-1.341448896]	Illumina [10439017] (imputed)	N
793	chr6	27310532	27310533	rs9461366	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	ZNF204P	rs9461366-A	NR	7E-9		0.0183585	[0.012-0.025] unit decrease	Affymetrix [323858] (imputed)	N
793	chr6	27310532	27310533	rs9461366	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	ZNF204P	rs9461366-A	NR	6E-9		0.0184531	[0.012-0.025] unit decrease	Affymetrix [127266] (imputed)	N
793	chr6	27310532	27310533	rs9461366	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6p22.1	ZNF204P	rs9461366-A	NR	2E-9		0.0187338	[0.013-0.025] unit decrease	Affymetrix [321114] (imputed)	N
793	chr6	27310532	27310533	rs9461366	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p22.1	ZNF204P	rs9461366-A	NR	2E-8		0.017575	[0.011-0.024] unit decrease	Affymetrix [323858] (imputed)	N
793	chr6	27310532	27310533	rs9461366	33002439	Jin G	2020-10-01	Lancet Oncol	Genetic risk, incident gastric cancer, and healthy lifestyle: a meta-analysis of genome-wide association studies and prospective cohort study.	Gastric cancer	10,254 Han Chinese ancestry cases, 10,914 Han Chinese ancestry controls	NA	6p22.1	NR	rs9461366-A	0.15	2E-6		1.15	NR	Affymetrix, Illumina [6957974] (imputed)	N
793	chr6	27311657	27311658	rs6922815	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Schizophrenia (MTAG)	940,613 European ancestry individuals	NA			rs6922815-?	NR	7E-11				NR [2625067]	N
793	chr6	27311657	27311658	rs6922815	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Bipolar disorder (MTAG)	1,450,972 European ancestry individuals	NA			rs6922815-?	NR	3E-8				NR [2625067]	N
793	chr6	27311657	27311658	rs6922815	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	67,764 individuals	NA		NR	rs6922815-?		3E-10				NR [8377093]	N
793	chr6	27311657	27311658	rs6922815	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Bipolar disorder (MTAG)	65,682 individuals	NA		NR	rs6922815-?		2E-8				NR [520857]	N
793	chr6	27311710	27311711	rs12196970	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	ZNF204P	rs12196970-T	NR	3E-12		0.0368578	[0.027-0.047] unit decrease	Affymetrix [321016] (imputed)	N
793	chr6	27312077	27312078	rs764284	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	6p22.1	POM121L2, ZNF391	rs764284-G	0.58	1E-10		6.47	z-score increase	Affymetrix [4311822] (imputed)	N
793	chr6	27312077	27312078	rs764284	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p22.1	ZNF184, ZNF204P, ZNF391	rs764284-A		6E-11		1.07	[1.05-1.09]	Affymetrix, Illumina [NR]	N
793	chr6	27326999	27327000	rs72839477	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	6p22.1		rs72839477-?	NR	4E-24		0.0501	unit decrease	NR [NR]	N
793	chr6	27331595	27331596	rs9393813	28115744	Ikeda M	2017-01-24	Mol Psychiatry	A genome-wide association study identifies two novel susceptibility loci and trans population polygenicity associated with bipolar disorder.	Bipolar disorder	2,964 Japanese ancestry case, 61,887 Japanese ancestry controls, 7,481 European ancestry cases, 9,250 European ancestry controls	NA	6p22.1	ZNF204P	rs9393813-A	NR	5E-7		1.09431	[1.05655-1.13342]	Illumina [at least 6195093] (imputed)	N
793	chr6	27336488	27336489	rs6914864	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Liver iron content	32,858 European ancestry individuals	NA	6p22.1	ZNF391	rs6914864-?	NR	2E-29	(conditional)	0.0904	NR mg/g increase	Affymetrix [9390170] (imputed)	N
793	chr6	27341408	27341409	rs7759001	26831199	Pattaro C	2016-01-21	Nat Commun	Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function.	Glomerular filtration rate (creatinine)	133,413 European ancestry individuals	42,166 European ancestry individuals, up to 16,471 African ancestry individuals, up to 42,296 Asian ancestry individuals	6p22.1	ZNF204	rs7759001-A	0.76	2E-8	(EA)	0.0051	[0.0033-0.0069] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
793	chr6	27366820	27366821	rs12663650	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p22.1		rs12663650-C	0.435	8E-20				Affymetrix [10369434] (imputed)	N
793	chr6	27366820	27366821	rs12663650	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p22.1		rs12663650-C	0.435	1E-13				Affymetrix [10369434] (imputed)	N
793	chr6	27376000	27376001	rs2064219	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depression	688,809 European ancestry individuals	NA	6p22.1	NR	rs2064219-A	NR	8E-10		6.152	z score increase	Affymetrix [10847151] (imputed)	N
793	chr6	27376000	27376001	rs2064219	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms (MTAG)	354,862 European ancestry individuals	NA	6p22.1	NR	rs2064219-G	0.342	2E-12		0.0157	[0.011-0.02] unit decrease	Illumina [NR] (imputed)	N
793	chr6	27376000	27376001	rs2064219	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms	354,862 European ancestry individuals	NA	6p22.1	NR	rs2064219-G	0.342	2E-12		0.0175	[0.013-0.022] unit decrease	Illumina [NR] (imputed)	N
793	chr6	27377667	27377668	rs12525255	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	6p22.1	NR	rs12525255-T	0.39	8E-10		0.0115	[0.0078-0.0152] unit increase	NR [NR]	N
793	chr6	27380201	27380202	rs4711152	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	6p22.1	NR	rs4711152-C	0.450835721417653	2E-12		0.008296335	[0.006-0.0106] unit increase	NR [NR]	N
793	chr6	27380201	27380202	rs4711152	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	6p22.1	NR	rs4711152-C	0.450835721417653	4E-12		0.008888244	[0.0064-0.0114] unit increase	NR [NR]	N
793	chr6	27384519	27384520	rs6929812	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	6p22.1	NR	rs6929812-?	NR	5E-7		0.0087708	[0.0053-0.0122] unit increase	Affymetrix [805426] (imputed)	N
793	chr6	27384519	27384520	rs6929812	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Neuroticism (MTAG)	168,105 European ancestry individuals	NA	6p22.1	NR	rs6929812-C	0.2253	2E-9		0.016639344	[0.011-0.022] unit increase	Illumina [NR] (imputed)	N
793	chr6	27390114	27390115	rs13191227	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA	6p22.1	NR	rs13191227-?	NR	3E-7		0.0667	[0.041-0.092] unit increase	Illumina [at least 560000] (imputed)	N
793	chr6	27390398	27390399	rs6456785	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	6p22.1	Intergenic	rs6456785-T	0.4262	3E-16	(MTAG)	0.0148	[0.011-0.018] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
793	chr6	27390398	27390399	rs6456785	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	6p22.1	Intergenic	rs6456785-T	0.4262	2E-12		0.0138	[0.0099-0.0177] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
794	chr6	27396657	27396658	rs2893916	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	6p22.1	NR	rs2893916-A	0.541146798462098	2E-13		0.011882648	[0.0087-0.015] unit increase	NR [NR]	N
794	chr6	27396657	27396658	rs2893916	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	6p22.1	NR	rs2893916-A	0.541146798462098	1E-12		0.007878381	[0.0057-0.01] unit increase	NR [NR]	N
794	chr6	27410421	27410422	rs35984974	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	6p22.1		rs35984974-?	NR	9E-9				NR [NR]	N
794	chr6	27410421	27410422	rs35984974	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder	16,823 European ancestry cases, 25,632 European ancestry controls	NA	6p22.1		rs35984974-?	NR	5E-9		0.92654	[0.9-0.95]	NR [NR]	N
794	chr6	27410421	27410422	rs35984974	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	6p22.1	NR	rs35984974-G	0.0755467	4E-17		0.10051535	[0.077-0.124] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
794	chr6	27411728	27411729	rs76439045	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	6p22.1	NR	rs76439045-?	NR	5E-8				Affymetrix [5486770] (imputed)	N
794	chr6	27412385	27412386	rs7772160	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Neuroticism	274,107 British ancestry individuals	NA	6p22.1	NR	rs7772160-C	0.4783	3E-8		0.01061	[0.0069-0.0144] unit decrease	NR [8968716] (imputed)	N
794	chr6	27412385	27412386	rs7772160	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Help-seeking from a GP	113,262 British ancestry cases, 219,360 British ancestry controls	NA	6p22.1	NR	rs7772160-T	0.522	3E-12		1.0362694	[1.03-1.05]	NR [5276842] (imputed)	N
794	chr6	27412385	27412386	rs7772160	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	6p22.1	HIST1H2BK	rs7772160-T	0.471519	3E-8		5.55	z score increase	NR [10847151] (imputed)	N
794	chr6	27413830	27413831	rs35394453	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	6p22.1	Intergenic	rs35394453-A	0.43	8E-16	(MTAG)	0.0134	[0.01-0.017] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
794	chr6	27413830	27413831	rs35394453	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6p22.1	Intergenic	rs35394453-A	0.4484	2E-8	(MTAG)	0.0074	[0.0049-0.0099] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
794	chr6	27413830	27413831	rs35394453	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	6p22.1	Intergenic	rs35394453-A	0.4601	1E-11	(MTAG)	0.0156	[0.011-0.02] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
794	chr6	27413923	27413924	rs13195040	27659466	van der Harst P	2016-09-27	J Am Coll Cardiol	52 Genetic Loci Influencing Myocardial Mass.	QRS complex (Cornell)	up to 58,172 European ancestry individuals, up to 690 Orcadian (founder/genetic isolate) individuals	13,263 European ancestry individuals, 3,603 African American individuals, 4,619 Indian ancestry individuals	6p22.1	NR	rs13195040-?	NR	3E-8	(EA)			Affymetrix, Illumina, Perlegen [2766983] (imputed)	N
794	chr6	27422065	27422066	rs6456788	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	NR	rs6456788-?	NR	8E-6		4.46	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
794	chr6	27425184	27425185	rs1883216	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p22.1	ZNF184	rs1883216-C		3E-15		0.018	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
794	chr6	27425643	27425644	rs34196306	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	6p22.1	ZNF184	rs34196306-G	0.893449	2E-18		0.0199863	[0.016-0.024] unit decrease	Affymetrix [12370749]	N
794	chr6	27425643	27425644	rs34196306	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p22.1	NR	rs34196306-C	0.0846	1E-9	(EA)	0.0747	[0.051-0.099] unit decrease	Illumina [~ 11800000] (imputed)	N
794	chr6	27430125	27430126	rs113039233	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	6p22.1	NR	rs113039233-A	0.284412772125483	1E-9		0.009887991	[0.0067-0.0131] unit decrease	NR [NR]	N
794	chr6	27441722	27441723	rs149866169	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	6p22.1	NR	rs149866169-A	0.08	5E-12		1.2	[1.14-1.26]	Illumina [8468885] (imputed)	N
794	chr6	27441722	27441723	rs149866169	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Subjective well-being (MTAG)	388,538 European ancestry individuals	NA	6p22.1	NR	rs149866169-A	0.0974	3E-10		0.0197	[0.014-0.026] unit increase	Illumina [NR] (imputed)	N
794	chr6	27441722	27441723	rs149866169	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Neuroticism (MTAG)	168,105 European ancestry individuals	NA	6p22.1	NR	rs149866169-A	0.1228	4E-10		0.0272	[0.019-0.036] unit decrease	Illumina [NR] (imputed)	N
794	chr6	27441722	27441723	rs149866169	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Squamous cell lung carcinoma	7,426 European ancestry cases, 55,627 European ancestry controls	NA	6p22.1	ZNF184	rs149866169-A	0.08478316	1E-11		1.2456464	[1.168887127-1.327446209]	Illumina [10439017] (imputed)	N
794	chr6	27441722	27441723	rs149866169	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in ever smokers	23,223 European ancestry cases,  16,964 European ancestry controls	NA	6p22.1	ZNF184	rs149866169-A	0.088421964	8E-9		1.1601964	[1.103049701-1.220303851]	Illumina [10439017] (imputed)	N
794	chr6	27441722	27441723	rs149866169	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	6p22.1	ZNF184	rs149866169-A	0.086548716	2E-11		1.1461717	[1.101581237-1.192567123]	Illumina [10439017] (imputed)	N
794	chr6	27443201	27443202	rs67240003	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	6p22.1	DPP4	rs67240003-?		4E-11				NR [7428630] (imputed)	N
794	chr6	27446565	27446566	rs7749305	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	6p22.1	ZNF184	rs7749305-T	0.87611	9E-14		0.0224275	[0.017-0.028] unit increase	Affymetrix [NR] (imputed)	N
794	chr6	27446565	27446566	rs7749305	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	6p22.1	OR2E1P	rs7749305-?	NR	1E-12		0.0278	[0.021-0.035] unit decrease	Affymetrix [5701386] (imputed)	N
794	chr6	27446565	27446566	rs7749305	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p22.1	NR	rs7749305-C	0.1209	4E-11		0.0119	[0.0084-0.0154] unit decrease	NR [7666894] (imputed)	N
794	chr6	27451418	27451419	rs6918792	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	6p22.1		rs6918792-A	0.917	7E-20		0.021	[0.017-0.025] unit increase	NR [NR] (imputed)	N
794	chr6	27455134	27455138	rs201475493	30808802	Freidin M	2019-02-26	J Med Genet	Genome-wide meta-analysis identifies genetic locus on chromosome 9 associated with Modic changes.	Modic changes	994 European ancestry cases, 835 European ancestry controls	NA	6p22.1	ZNF184	rs201475493-AAATG	0.927	3E-6		1.7857143	[1.39-2.27]	Illumina [5479070] (imputed)	N
794	chr6	27456052	27456054	rs144022448	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Varicose veins	22,037 European ancestry cases, 437,665 European ancestry controls, 474 East Asian ancestry cases, 178,252 East Asian ancestry controls	NA	6p22.1		rs144022448-C	NR	3E-8		0.1042	[0.068-0.141] unit decrease	Affymetrix, Illumina [25842955] (imputed)	N
794	chr6	27459922	27459923	rs34864796	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FVC)	48,943 European ancestry individuals.	57,176 European ancestry individuals, 38,199 individuals.	6p22.1	ZKSCAN3	rs34864796-A	0.1274	5E-10		0.062	[0.042-0.082] unit decrease	Affymetrix [27624732] (imputed)	N
794	chr6	27459922	27459923	rs34864796	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FEV1/FVC)	48,943 European ancestry individuals	57,176 European ancestry individuals, 38,199 individuals.	6p22.1	ZKSCAN3	rs34864796-A	0.1274	4E-10		0.062	[0.042-0.082] unit decrease	Affymetrix [27624732] (imputed)	N
794	chr6	27459922	27459923	rs34864796	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FEV1)	48,943 European ancestry individuals.	57,176 European ancestry individuals, 38,199 individuals.	6p22.1	ZKSCAN3	rs34864796-A	0.13	6E-14		0.075	[0.055-0.095] unit decrease	Affymetrix [up to 27624732] (imputed)	N
794	chr6	27463626	27463627	rs147439337	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Depression	at least 5,919 European ancestry cases, at least 130,691 European ancestry controls	634,037 European ancestry cases, 1,308,690 European ancestry controls	6p22.1	XXbac, BPGBPG34I8.1	rs147439337-G	0.01491	2E-9		0.041734487	[0.026-0.057] unit decrease	NR [9417325] (imputed)	N
794	chr6	27475119	27475120	rs4413607	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on educational attainment (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	6p22.1		rs4413607-?	NR	8E-9				NR [NR]	N
794	chr6	27475143	27475144	rs2393964	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on cognitive performance (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	6p22.1		rs2393964-?	NR	4E-9				NR [NR]	N
794	chr6	27480226	27480227	rs2205829	28115744	Ikeda M	2017-01-24	Mol Psychiatry	A genome-wide association study identifies two novel susceptibility loci and trans population polygenicity associated with bipolar disorder.	Bipolar disorder	2,964 Japanese ancestry case, 61,887 Japanese ancestry controls, 7,481 European ancestry cases, 9,250 European ancestry controls	NA	6p22.1	TRNAS3	rs2205829-G	NR	4E-7		1.09434	[1.05685-1.13317]	Illumina [at least 6195093] (imputed)	N
794	chr6	27491298	27491299	rs6904596	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms (MTAG)	955,012 individuals	NA	6p22.1	NR	rs6904596-?		9E-14				NR [520857]	N
794	chr6	27491298	27491299	rs6904596	26423011	Wain LV	2015-09-27	Lancet Respir Med	Novel insights into the genetics of smoking behaviour, lung function, and chronic obstructive pulmonary disease (UK BiLEVE): a genetic association study in UK Biobank.	Lung function in never smokers (low FEV1 vs high FEV1)	9,745 European ancestry individuals with low FEV1 measurements, 4,902 European ancestry individuals with high FEV1 measurements	NA	6p22.1	ZKSCAN3	rs6904596-A	0.133	1E-8		1.244	[1.154-1.342]	Affymetrix [28509962] (imputed)	N
794	chr6	27496597	27496598	rs79310511	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	6p22.1	NR	rs79310511-G	0.048138000000000014	7E-10		0.0433605	[0.029-0.057] unit increase	Affymetrix [16577424] (imputed)	N
794	chr6	27497147	27497148	rs6908155	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Liver iron content	32,858 European ancestry individuals	NA	6p22.1	ZNF184	rs6908155-?	NR	4E-108	(conditional)	0.207	NR mg/g decrease	Affymetrix [9390170] (imputed)	N
794	chr6	27515518	27515519	rs6910838	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling guilty	373,380 European ancestry individuals	NA	6p22.1	NR	rs6910838-A	0.388381	4E-8		5.49	z score decrease	NR [10847151] (imputed)	N
794	chr6	27519946	27519947	rs71559031	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	6p22.1		rs71559031-G	0.916	3E-203		0.62	[-0.66--0.58] % decrease	Affymetrix [NR] (imputed)	N
794	chr6	27521095	27521096	rs35848276	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium HDL	115,082 European ancestry individuals	NA	6p22.1		rs35848276-C	0.887693	5E-9		0.0356078	[0.024-0.048] unit increase	NR [11722792] (imputed)	N
794	chr6	27521095	27521096	rs35848276	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p22.1	XXbac-BPG34I8.3	rs35848276-T	NR	5E-11		0.0320218	[0.022-0.042] unit decrease	Affymetrix [323858] (imputed)	N
795	chr6	27527227	27527228	rs35491132	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA	6p22.1	NR	rs35491132-?	NR	2E-6		0.0602	[0.035-0.085] unit increase	Illumina [at least 560000] (imputed)	N
795	chr6	27530025	27530026	rs143334272	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-9 levels	3,634 Finnish ancestry individuals	NA	6p22.1	NR	rs143334272-C		4E-6		0.3074	[0.18-0.44] SD units decrease	NR [10700000] (imputed)	N
795	chr6	27530025	27530026	rs143334272	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-17 levels	7,760 Finnish ancestry individuals	NA	6p22.1	NR	rs143334272-C		7E-6		0.1985	[0.11-0.28] SD units decrease	NR [10700000] (imputed)	N
795	chr6	27534527	27534528	rs10484399	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	6p22.1	NR	rs10484399-G	0.10184582058753	1E-20		0.017995937	[0.014-0.022] unit decrease	NR [NR]	N
795	chr6	27534527	27534528	rs10484399	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p22.1	ZNF184, LOC100131289	rs10484399-G	0.204	1E-16				Illumina [118177]	N
795	chr6	27555056	27555056	rs113780580	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p22.1	NR	rs113780580-AACAC	0.078	4E-9	(EA)	0.0786	[0.053-0.105] unit decrease	Illumina [~ 11800000] (imputed)	N
795	chr6	27555518	27555519	rs10807026	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung adenocarcinoma	11,273 European ancestry cases,  55,483 European ancestry controls	NA	6p22.1	ZNF184, LINC01012	rs10807026-C	0.720791754	3E-6		1.0867515	[1.05-1.13]	Illumina [10439017] (imputed)	N
795	chr6	27556140	27556141	rs13201294	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Receptor for advanced glycosylation end products levels	21,758 European ancestry individuals	9,173 individuals	6p22.1		rs13201294-A	0.89	3E-11		0.097	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
795	chr6	27556140	27556141	rs13201294	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Squamous cell lung carcinoma	7,426 European ancestry cases, 55,627 European ancestry controls	NA	6p22.1	ZNF184, LINC01012	rs13201294-T	0.089683477	5E-10		1.2158015	[1.143340389-1.292854961]	Illumina [10439017] (imputed)	N
795	chr6	27557803	27557804	rs9468165	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of saturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	6p22.1		rs9468165-T	0.487123	8E-9		0.0327152	[0.022-0.044] unit increase	NR [11722792] (imputed)	N
795	chr6	27560586	27560587	rs10946940	24871463	Armstrong DL	2014-05-29	Genes Immun	GWAS identifies novel SLE susceptibility genes and explains the association of the HLA region.	Systemic lupus erythematosus	725 European ancestry cases, 2,438 European ancestry controls	NA	6p22.1	ZNF184	rs10946940-A	0.35	8E-9		1.45	[1.37-1.54]	Illumina [NR]	N
795	chr6	27586229	27586230	rs13217599	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	6p22.1		rs13217599-T	0.911994	3E-8		0.0409468	[0.026-0.055] unit increase	NR [11722792] (imputed)	N
795	chr6	27586229	27586230	rs13217599	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Liver iron content	32,858 European ancestry individuals	NA	6p22.1	ZNF184	rs13217599-?	NR	6E-100	(conditional)	0.292	NR mg/g increase	Affymetrix [9390170] (imputed)	N
795	chr6	27592002	27592003	rs35715914	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	6p22.1	ZNF184	rs35715914-C	0.889263	1E-21		0.0301638	[0.024-0.036] unit increase	Affymetrix [NR] (imputed)	N
795	chr6	27592002	27592003	rs35715914	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p22.1	NR	rs35715914-T	0.1076	8E-11		0.0125	[0.0088-0.0162] unit decrease	NR [7666894] (imputed)	N
795	chr6	27593500	27593501	rs1033451	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	6p22.1		rs1033451-G	NR	2E-8		0.0125	[0.0082-0.0168] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
795	chr6	27595043	27595044	rs6936999	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Insular cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	6p22.1	NR	rs6936999-?		2E-6				Illumina [4322238] (imputed)	N
795	chr6	27606715	27606716	rs13212093	26423011	Wain LV	2015-09-27	Lancet Respir Med	Novel insights into the genetics of smoking behaviour, lung function, and chronic obstructive pulmonary disease (UK BiLEVE): a genetic association study in UK Biobank.	Lung function (low FEV1 vs high FEV1)	19,493 European ancestry individuals with low FEV1 measurements, 9,808 European ancestry individuals with high FEV1 measurements	NA	6p22.1	ZNF184, LOC100507173	rs13212093-T	NR	5E-11		0.192	[0.14-0.25] unit increase	Affymetrix [28509962] (imputed)	N
795	chr6	27610010	27610011	rs145577605	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Fibroblast growth factor basic levels	7,565 Finnish ancestry individuals	NA	6p22.1	NR	rs145577605-G		1E-6		0.2081	[0.12-0.29] SD units decrease	NR [10700000] (imputed)	N
795	chr6	27614800	27614801	rs116060946	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neuropathic bladder	2,237 European ancestry cases, 464,793 European ancestry controls, 308 East Asian ancestry cases, 178,418 East Asian ancestry controls	NA	6p22.1		rs116060946-A	NR	5E-9		0.6891	[0.46-0.92] unit increase	Affymetrix, Illumina [25842983] (imputed)	N
795	chr6	27622083	27622084	rs141342723	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p22.1	GPX5, GPX6, GUSBP2, HIST1H1B, HIST1H2AG, HIST1H2AH, HIST1H2AI, HIST1H2AJ, HIST1H2AK, HIST1H2AL, HIST1H2AM, HIST1H2BJ, HIST1H2BK, HIST1H2BL, HIST1H2BM, HIST1H2BN, HIST1H2BO, HIST1H3H, HIST1H3I, HIST1H3J, HIST1H4I, HIST1H4J, HIST1H4K, HIST1H4L, LINC00240, LINC01012, LOC100131289, LOC100270746, MIR3143, NKAPL, OR2B2, OR2B6, PGBD1, POM121L2, PRSS16, TOB2P1, VN1R10P, ZBED9, ZKSCAN3, ZKSCAN4, ZKSCAN8, ZNF165, ZNF184, ZNF192P1, ZNF204P, ZNF322, ZNF391, ZSCAN12, ZSCAN12P1, ZSCAN16, ZSCAN16-AS1, ZSCAN23, ZSCAN26, ZSCAN31, ZSCAN9	rs141342723-T		4E-24		1.2	[1.16-1.24]	Affymetrix, Illumina [NR]	N
795	chr6	27626630	27626631	rs9468186	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p22.1		rs9468186-A	0.708	2E-23				Affymetrix [10369434] (imputed)	N
795	chr6	27626630	27626631	rs9468186	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on self-rated math ability (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	6p22.1		rs9468186-?	NR	6E-9				NR [NR]	N
795	chr6	27626630	27626631	rs9468186	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on highest math class (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	6p22.1		rs9468186-?	NR	3E-9				NR [NR]	N
795	chr6	27626630	27626631	rs9468186	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on average household income before tax (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	6p22.1		rs9468186-?	NR	2E-9				NR [NR]	N
795	chr6	27626630	27626631	rs9468186	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Neuroticism	170,911 European ancestry individuals	NA	6p22.1	NR	rs9468186-A	0.794	2E-7		0.021873573	[0.014-0.03] unit increase	Affymetrix [up to 6544775] (imputed)	N
795	chr6	27633017	27633018	rs9366697	31972866	Nagel M	2020-01-23	Acta Psychiatr Scand	Genome-wide association study of the sensitivity to environmental stress and adversity (SESA) neuroticism cluster.	Sensitivity to environmental stress and adversity	351,827 European ancestry individuals	NA	6p22.1	NR	rs9366697-C	NR	2E-8		0.01363	NR unit decrease	NR [7259579]	N
795	chr6	27633017	27633018	rs9366697	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling guilty	373,380 European ancestry individuals	NA	6p22.1	HIST1H4F	rs9366697-T	0.366429	5E-9		5.85	z score increase	NR [10847151] (imputed)	N
795	chr6	27636312	27636313	rs60096640	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6p22.1		rs60096640-A	0.8926	2E-12		0.0159	[0.011-0.02] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
795	chr6	27636312	27636313	rs60096640	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6p22.1	Intergenic	rs60096640-A	0.8926	3E-13	(MTAG)	0.0154	[0.011-0.02] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
795	chr6	27653119	27653120	rs13217620	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in ever smokers	23,223 European ancestry cases,  16,964 European ancestry controls	NA	6p22.1	ZNF184, LINC01012	rs13217620-T	0.074695136	3E-8		1.1669619	[1.105093702-1.232293813]	Illumina [10439017] (imputed)	N
795	chr6	27653119	27653120	rs13217620	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	6p22.1	ZNF184, LINC01012	rs13217620-T	0.075167913	1E-10		1.1495541	[1.101661527-1.199528857]	Illumina [10439017] (imputed)	N
795	chr6	27653158	27653159	rs77050118	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs77050118-?		3E-6		1.79	[1.40-2.28]	Illumina [7645193] (imputed)	N
795	chr6	27655993	27655994	rs1555021	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	6p22.1	Intergenic	rs1555021-T	0.9154	9E-10	(MTAG)	0.0181	[0.012-0.024] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
795	chr6	27656119	27656120	rs145168562	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-17 levels	7,760 Finnish ancestry individuals	NA	6p22.1	NR	rs145168562-G		9E-6		0.1891	[0.11-0.27] SD units decrease	NR [10700000] (imputed)	N
796	chr6	27660507	27660508	rs9380007	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	6p22.1	NR	rs9380007-T	0.354871	4E-10		0.046115626	[0.032-0.061] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
796	chr6	27668509	27668510	rs151289341	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	6p22.1		rs151289341-A	NR	2E-9		0.0341	[0.023-0.045] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
796	chr6	27668509	27668510	rs151289341	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	120,539 East Asian ancestry individuals	NA	6p22.1		rs151289341-A	0.135753	2E-9		0.0341493	[0.023-0.045] unit decrease	Illumina [13474682] (imputed)	N
796	chr6	27668509	27668510	rs151289341	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hypothyroidism	1,114 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	6p22.1		rs151289341-A	0.137079522	4E-9		0.4107454	[0.27-0.55] unit decrease	Illumina [13429045] (imputed)	N
796	chr6	27675468	27675469	rs12179134	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	RP1-97D16.1	rs12179134-G	NR	6E-15		0.030312	[0.023-0.038] unit decrease	Affymetrix [323858] (imputed)	N
796	chr6	27675468	27675469	rs12179134	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	RP1-97D16.1	rs12179134-G	NR	1E-14		0.030059	[0.022-0.038] unit decrease	Affymetrix [127266] (imputed)	N
796	chr6	27676308	27676309	rs9468195	32201043	Smeland OB	2020-02-08	Biol Psychiatry	Genome-wide Association Analysis of Parkinson's Disease and Schizophrenia Reveals Shared Genetic Architecture and Identifies Novel Risk Loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	NA	6p22.1	RSL24D1P1	rs9468195-A		2E-9				Illumina [NR]	N
796	chr6	27676434	27676434	rs113957352	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs113957352-?		3E-8	(Superior corona radiata)			NR [8955960] (imputed)	N
796	chr6	27676434	27676434	rs113957352	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs113957352-?		2E-8	(Posterior corona radiata )			NR [8955960] (imputed)	N
796	chr6	27676793	27676794	rs4713118	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Parkinson's disease	9,619 European ancestry cases, 324,522 European ancestry controls	NA	6p22.1	ZNF184, HIST1H2BL	rs4713118-?	NR	2E-10		1.121	[1.083-1.162]	Illumina [12438219] (imputed)	N
796	chr6	27681214	27681215	rs9468199	28892059	Chang D	2017-09-11	Nat Genet	A meta-analysis of genome-wide association studies identifies 17 new Parkinson's disease risk loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	5,851 European ancestry cases, 5,866 European ancestry controls	6p22.1	ZNF184	rs9468199-A	0.172	1E-12		1.11	[1.08-1.14]	Illumina [11933700] (imputed)	N
796	chr6	27683571	27683572	rs9380010	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	6p22.1	NR	rs9380010-G	0.250213646683578	4E-15		0.010360345	[0.0078-0.0129] unit decrease	NR [NR]	N
796	chr6	27683571	27683572	rs9380010	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	6p22.1	NR	rs9380010-G	0.250213646683578	2E-15		0.013497693	[0.01-0.017] unit decrease	NR [NR]	N
796	chr6	27683571	27683572	rs9380010	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	6p22.1	NR	rs9380010-G	0.250213646683578	1E-14		0.011035533	[0.0082-0.0138] unit decrease	NR [NR]	N
796	chr6	27684653	27684654	rs9380012	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Anxiety	at least 23,606 European ancestry cases, at least 113,351 European ancestry controls	624,615 European ancestry cases, 1,310,854 European ancestry controls	6p22.1	RP1, 97D16.1	rs9380012-A	0.2366	5E-30		0.03056406	[0.025-0.037] unit increase	NR [9417325] (imputed)	N
796	chr6	27689938	27689939	rs2056923	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	ENSG00000216915	rs2056923-T	NR	7E-9		5.781	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
796	chr6	27698836	27698837	rs13202295	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	6p22.1	NR	rs13202295-C	0.0715706	4E-18		0.10626139	[0.082-0.13] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
796	chr6	27700799	27700800	rs71919754	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs71919754-?		5E-8	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
796	chr6	27700799	27700800	rs71919754	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	6p22.1	NR	rs71919754-?		2E-8	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
796	chr6	27708731	27708732	rs6940116	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	6p22.1	ENSG00000216915	rs6940116-A	NR	2E-9		0.02411234	[0.016-0.032] unit decrease	Affymetrix [NR]	N
796	chr6	27708731	27708732	rs6940116	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p22.1	HIST1H1B, HIST1H2AI, HIST1H2AJ, HIST1H2AK, HIST1H2AL, HIST1H2AM, HIST1H2BL, HIST1H2BM, HIST1H2BN, HIST1H2BO, HIST1H3H, HIST1H3I, HIST1H3J, HIST1H4J, HIST1H4K, HIST1H4L, LINC01012, LOC100131289, NKAPL, OR2B2, OR2B6, PGBD1, TOB2P1, ZKSCAN4, ZKSCAN8, ZNF165, ZNF184, ZNF192P1, ZSCAN12P1, ZSCAN16, ZSCAN16-AS1, ZSCAN26, ZSCAN31, ZSCAN9	rs6940116-A		2E-15		1.11	[1.08-1.14]	Affymetrix, Illumina [NR]	N
796	chr6	27710164	27710165	rs17693963	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Autism spectrum disorder (MTAG)	at least 18,381 European ancestry cases, at least 27,969 European ancestry controls	NA	6p22.1	NR	rs17693963-A	0.9135	5E-9		0.11696423	[0.078-0.156] unit increase	NR [NR]	N
796	chr6	27710164	27710165	rs17693963	24280982	Ruderfer DM	2013-11-26	Mol Psychiatry	Polygenic dissection of diagnosis and clinical dimensions of bipolar disorder and schizophrenia.	Schizophrenia or bipolar disorder	Up to 4,528 European ancestry schizophrenia cases, up to 4,841 schizophrenia cases, up to 7,362 European ancestry bipolar disorder cases, up to 3,048 bipolar disorder cases, up to 11,637 European ancestry controls, up to 7,786 controls	NA	6p22.1	MHC	rs17693963-?	NR	3E-9	(SCZ vs. controls)			Affymetrix, Illumina [~ 1100000] (imputed)	N
796	chr6	27710164	27710165	rs17693963	24280982	Ruderfer DM	2013-11-26	Mol Psychiatry	Polygenic dissection of diagnosis and clinical dimensions of bipolar disorder and schizophrenia.	Schizophrenia or bipolar disorder	Up to 4,528 European ancestry schizophrenia cases, up to 4,841 schizophrenia cases, up to 7,362 European ancestry bipolar disorder cases, up to 3,048 bipolar disorder cases, up to 11,637 European ancestry controls, up to 7,786 controls	NA	6p22.1	MHC	rs17693963-?		3E-11	(SCZ or BP vs. controls)			Affymetrix, Illumina [~ 1100000] (imputed)	N
796	chr6	27710164	27710165	rs17693963	24166486	Sleiman P	2013-10-29	Sci Rep	GWAS meta analysis identifies TSNARE1 as a novel Schizophrenia / Bipolar susceptibility locus.	Schizophrenia, schizoaffective disorder or bipolar disorder	11,985 European, African American, Asian, other and unknown ancestry schizophrenia cases, 377 European, African American, Asian, other and unknown ancestry schizoaffective disorder cases, 1,032 bipolar disorder cases, 34,676 European, African American, Asian, other and unknown ancestry controls	2652 individuals	6p22.1	MHC	rs17693963-?	0.904	2E-9				Affymetrix, Illumina [NR] (imputed)	N
796	chr6	27710164	27710165	rs17693963	22688191	Bergen SE	2012-06-12	Mol Psychiatry	Genome-wide association study in a Swedish population yields support for greater CNV and MHC involvement in schizophrenia compared with bipolar disorder.	Schizophrenia	2,111 European ancestry cases, 2,535 European ancestry controls	11,271 European ancestry cases, 14,601 European ancestry controls	6p22.1	MHC	rs17693963-?	NR	3E-11		1.24	[NR]	Affymetrix [745006]	N
796	chr6	27714897	27714898	rs373130365	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	119,629 East Asian ancestry individuals	NA	6p22.1	NR	rs373130365-C	0.9918	2E-11		0.2058	[0.15-0.27] SD units decrease	Affymetrix, Illumina [16286228] (imputed)	N
796	chr6	27720703	27720703	rs34034915	33204752	Butler-Laporte G	2020-09-24	Open Forum Infect Dis	Genetic Determinants of Antibody-Mediated Immune Responses to Infectious Diseases Agents: A Genome-Wide and HLA Association Study.	Epstein-Barr virus ZEBRA antibody levels	8,191 White British ancestry individuals	NA	6p22.1	RP1, 97D16.1	rs34034915-T	0.660	3E-9		0.1	[0.067-0.133] unit increase	NR [25472218] (imputed)	N
796	chr6	27720703	27720703	rs34034915	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Hepatitis A	2,442 European ancestry cases, 217,137 European ancestry controls	NA	6p22.1	NR	rs34034915-?	NR	9E-6		0.2239	[0.12-0.32] unit decrease	Illumina [at least 560000] (imputed)	N
796	chr6	27720711	27720712	rs36042294	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Myopia (age of diagnosis)	104,293 European ancestry individuals	NA	6p22.1	NR	rs36042294-C	0.8318	4E-8		0.0603	[0.039-0.082] unit increase	Illumina [~ 10600000] (imputed)	N
796	chr6	27738800	27738801	rs4140646	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	6p22.1	LOC100131289	rs4140646-A	0.2081	6E-12		0.0833	[0.06-0.107] unit increase	NR [7784415] (imputed)	N
796	chr6	27739379	27739380	rs742047	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume x hypertension interaction (2df)	46,055 European ancestry individuals, 2,469 African American individuals	NA	6p22.1	LOC100131289	rs742047-A	0.764	3E-6				Affymetrix, Illumina [9900000] (imputed)	N
796	chr6	27739379	27739380	rs742047	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume x hypertension interaction (2df)	46,055 European ancestry individuals	NA	6p22.1	LOC100131289	rs742047-A	0.764	8E-6				Affymetrix, Illumina [9900000] (imputed)	N
796	chr6	27739379	27739380	rs742047	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume (adjusted for hypertension)	46,055 European ancestry individuals, 2,469 African American individuals	NA	6p22.1	LOC100131289	rs742047-A	0.764	5E-7		0.0344	[0.021-0.048] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
796	chr6	27739379	27739380	rs742047	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume (adjusted for hypertension)	46,055 European ancestry individuals	NA	6p22.1	LOC100131289	rs742047-A	0.764	3E-6		0.0318	[0.018-0.045] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
796	chr6	27739379	27739380	rs742047	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	48,454 European ancestry individuals	NA	6p22.1	LOC100131289	rs742047-A	0.764	2E-6		0.0316	[0.018-0.045] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
796	chr6	27739379	27739380	rs742047	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	2,516 African American individuals, 48,454 European ancestry individuals	NA	6p22.1	LOC100131289	rs742047-A	0.764	5E-7		0.0341	[0.021-0.047] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
796	chr6	27739565	27739566	rs35501037	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	6p22.1	LOC100131289	rs35501037-A	0.0875	3E-14		0.052	[0.038-0.066] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
796	chr6	27739565	27739566	rs35501037	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	6p22.1	LOC100131289	rs35501037-A	0.0932	4E-16		0.3585	[0.27-0.44] mmHg increase	Affymetrix [NR] (imputed)	N
796	chr6	27747041	27747042	rs9357048	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6p22.1		rs9357048-A	0.9218	4E-9	(conditional-joint)	0.0155	[0.01-0.021] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
796	chr6	27757854	27757855	rs200468	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	IgD on IgD+ CD38+ B cell	3,656 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p22.1		rs200468-G	0.31129	3E-9		0.179	[0.12-0.24] unit decrease	Illumina [18238289] (imputed)	N
796	chr6	27759114	27759115	rs35037868	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	6p22.1	NR	rs35037868-C	0.07	2E-10		1.2	[1.14-1.26]	Illumina [8468885] (imputed)	N
796	chr6	27759114	27759115	rs35037868	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs35037868-?		5E-8	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
796	chr6	27759114	27759115	rs35037868	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs35037868-?		1E-8	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
796	chr6	27759114	27759115	rs35037868	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	6p22.1	LOC100131289, HIST1H2BL	rs35037868-C	0.076657538	2E-10		1.1462637	[1.099034119-1.195523033]	Illumina [10439017] (imputed)	N
796	chr6	27763713	27763714	rs76148407	33204752	Butler-Laporte G	2020-09-24	Open Forum Infect Dis	Genetic Determinants of Antibody-Mediated Immune Responses to Infectious Diseases Agents: A Genome-Wide and HLA Association Study.	Merkel cell polyomavirus VP1 antibody levels	5,915 White British ancestry individuals	NA	6p22.1	HIST1, H4PS1	rs76148407-C	0.967	2E-9		0.31	[0.21-0.41] unit increase	NR [25472218] (imputed)	N
796	chr6	27766841	27766842	rs188973463	30181555	Strawbridge RJ	2018-09-04	Transl Psychiatry	Genetics of self-reported risk-taking behaviour, trans-ethnic consistency and relevance to brain gene expression.	Self-reported risk-taking behaviour	83,677 British ancestry cases, 244,662 British ancestry controls	2,764 South Asian ancestry cases, 3,139 African Caribbean ancestry cases, 16,169 European ancestry cases, 3,866 mixed ancestry cases, 4,267 South Asian ancestry controls, 4,341 African Caribbean ancestry controls, 31,814 European ancestry controls, 5,988 mixed ancestry controls	6p22.1	HLA	rs188973463-T	0.74	4E-9		0.037	[0.025-0.049] unit increase	Affymetrix [NR] (imputed)	N
796	chr6	27767639	27767640	rs200474	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	IgD on transitional B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p22.1		rs200474-A	0.31172	2E-8		0.1677	[0.11-0.23] unit decrease	Illumina [18238311] (imputed)	N
796	chr6	27768347	27768348	rs200476	30410027	Gudmundsson J	2018-11-08	Nat Commun	Genome-wide associations for benign prostatic hyperplasia reveal a genetic correlation with serum levels of PSA.	Benign prostatic hyperplasia and lower urinary tract symptoms (prostate cancer excluded)	18,138 European ancestry cases, 277,213 European ancestry controls	NA	6p22.1		rs200476-A	0.838	4E-15		1.1363636	[1.1-1.18]	Affymetrix, Illumina [42907111] (imputed)	N
796	chr6	27768347	27768348	rs200476	30410027	Gudmundsson J	2018-11-08	Nat Commun	Genome-wide associations for benign prostatic hyperplasia reveal a genetic correlation with serum levels of PSA.	Benign prostatic hyperplasia and lower urinary tract symptoms	20,621 European ancestry cases, 280,541 European ancestry controls	NA	6p22.1	HIST1H2BL	rs200476-A	0.162	4E-17		1.1363636	[1.11-1.18]	Affymetrix, Illumina [42907111] (imputed)	N
796	chr6	27770889	27770890	rs169262	35132056	Mitchell BL	2022-02-07	Nat Commun	Genome-wide association meta-analysis identifies 29 new acne susceptibility loci.	acne vulgaris	20,165 European ancestry cases, 595,231 European ancestry controls	NA	6p22.1	NR	rs169262-C	0.8091	3E-10		1.1	[1.07-1.14]	Affymetrix, Illumina [7072771] (imputed)	N
796	chr6	27775673	27775674	rs200484	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p22.1	HIST1H2BL	rs200484-G		7E-52		0.051	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
796	chr6	27777348	27777349	rs116237381	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Fibroblast growth factor basic levels	7,565 Finnish ancestry individuals	NA	6p22.1	NR	rs116237381-G		1E-6		0.2069	[0.12-0.29] SD units decrease	NR [10700000] (imputed)	N
796	chr6	27779657	27779658	rs144335201	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs144335201-?		3E-6		1.78	[1.40-2.27]	Illumina [7645193] (imputed)	N
796	chr6	27782537	27782538	rs401754	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	6p22.1	HIST1H2AJ	rs401754-T	NR	2E-21	(EA)	1.188	[1.15-1.22]	Illumina [6627481] (imputed)	N
797	chr6	27799469	27799470	rs71559051	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	6p22.1	Intergenic	rs71559051-A	0.9159	8E-16		0.0283	[0.021-0.035] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
797	chr6	27805254	27805255	rs34706883	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	67,764 individuals	NA	6p22.1	NR	rs34706883-?		2E-26				NR [8377093]	N
797	chr6	27805254	27805255	rs34706883	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Bipolar disorder (MTAG)	65,682 individuals	NA	6p22.1	NR	rs34706883-?		7E-20				NR [520857]	N
797	chr6	27805254	27805255	rs34706883	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	6p22.1	NR	rs34706883-A	NR	5E-27		1.24	[NR]	Illumina [7158791] (imputed)	N
797	chr6	27806984	27806985	rs13212651	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	6p22.1	HIST1H2BN	rs13212651-A	NR	6E-13		0.035001438	[0.025-0.045] unit decrease	Affymetrix [NR]	N
797	chr6	27810843	27810844	rs67961572	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	HIST1H2BN	rs67961572-C	NR	2E-8		0.0210761	[0.014-0.028] unit decrease	Affymetrix [323858] (imputed)	N
797	chr6	27810843	27810844	rs67961572	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	HIST1H2BN	rs67961572-C	NR	2E-8		0.0209989	[0.014-0.028] unit decrease	Affymetrix [127266] (imputed)	N
797	chr6	27810863	27810864	rs35672256	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs35672256-?		2E-8	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
797	chr6	27810863	27810864	rs35672256	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs35672256-?		2E-8	(Superior corona radiata)			NR [8955960] (imputed)	N
797	chr6	27813812	27813813	rs200994	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	6p22.1	NR	rs200994-?		2E-8	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
797	chr6	27815493	27815494	rs200991	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	HIST1H2BN	rs200991-A	NR	4E-8		5.472	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
797	chr6	27815638	27815639	rs13194781	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	6p22.1	NR	rs13194781-G	0.102416058704393	4E-21		0.01800981	[0.014-0.022] unit decrease	NR [NR]	N
797	chr6	27815822	27815823	rs200990	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms	688,809 individuals	NA	6p22.1	NR	rs200990-?		4E-10				NR [11140414]	N
797	chr6	27815822	27815823	rs200990	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depression	688,809 European ancestry individuals	NA	6p22.1	NR	rs200990-T	NR	4E-10		6.256	z score increase	Affymetrix [10847151] (imputed)	N
797	chr6	27819352	27819353	rs200988	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling guilty	373,380 European ancestry individuals	NA	6p22.1	HIST1H3B	rs200988-T	0.282407	1E-9		6.06	z score increase	NR [10847151] (imputed)	N
797	chr6	27824765	27824766	rs200986	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p22.1	HIST1H1B, HIST1H2AI, HIST1H2AJ, HIST1H2AK, HIST1H2AL, HIST1H2AM, HIST1H2BL, HIST1H2BM, HIST1H2BN, HIST1H2BO, HIST1H3H, HIST1H3I, HIST1H3J, HIST1H4J, HIST1H4K, HIST1H4L, LINC01012, LOC100131289, OR2B2, OR2B6, TOB2P1, ZKSCAN4, ZKSCAN8, ZNF165, ZNF192P1, ZSCAN12P1, ZSCAN16, ZSCAN16-AS1, ZSCAN9	rs200986-?		2E-11		1.098901	[1.06-1.12]	Affymetrix, Illumina [NR]	N
797	chr6	27825859	27825860	rs9461416	33649182	Penova M	2021-03-01	Proc Natl Acad Sci U S A	Genome wide association study of HTLV-1-associated myelopathy/tropical spastic paraparesis in the Japanese population.	HTLV-1 associated myelopathy	731 Japanese ancestry cases, 846 Japanese ancestry controls	NA	6p22.1		rs9461416-G	0.95	2E-6		0.51	[0.39-0.67]	Illumina [126394]	N
797	chr6	27835217	27835218	rs17763089	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p22.1	NR	rs17763089-A	0.11	3E-6		1.12	[1.07-1.17]	Affymetrix [9886854] (imputed)	N
797	chr6	27835217	27835218	rs17763089	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p22.1	NR	rs17763089-A	0.11	2E-10			[NR]	Affymetrix [9886854] (imputed)	N
797	chr6	27835217	27835218	rs17763089	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in never smokers	8,631 European ancestry cases, 120,544 European ancestry controls	NA	6p22.1	NR	rs17763089-A	0.11	2E-6		1.12	[1.07-1.18]	Affymetrix [9886854] (imputed)	N
797	chr6	27835217	27835218	rs17763089	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in ever smokers	12,446 European ancestry cases, 59,145 European ancestry controls	NA	6p22.1	NR	rs17763089-A	0.11	3E-6		1.11	[1.06-1.16]	Affymetrix [9886854] (imputed)	N
797	chr6	27835292	27835293	rs201148465	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	Low density lipoprotein cholesterol levels	up to 237,050 European ancestry individuals, up to 16,935 African ancestry individuals, up to 30,468 South Asian ancestry individuals, up to 8,287 East Asian ancestry individuals, 5,084 Hispanic individuals	up to 286,268 European and unknown ancestry individuals	6p22.1	HIST1H1B	rs201148465-C	NR	3E-8		0.21	[0.14-0.28] unit increase	Illumina [242289]	N
797	chr6	27835434	27835435	rs200949	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	6p22.1		rs200949-?	NR	2E-8				NR [NR]	N
797	chr6	27835434	27835435	rs200949	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder	16,823 European ancestry cases, 25,632 European ancestry controls	NA	6p22.1		rs200949-?	NR	9E-9		1.07186	[1.05-1.1]	NR [NR]	N
797	chr6	27835434	27835435	rs200949	30718901	Howard DM	2019-02-04	Nat Neurosci	Genome-wide meta-analysis of depression identifies 102 independent variants and highlights the importance of the prefrontal brain regions.	Depression	118,811 European ancestry cases, 327,427 European ancestry controls, 127,552 cases, 233,763 controls	414,055 European ancestry cases, 892,299 European ancestry controls	6p22.1	NR	rs200949-A	0.8744	2E-37		1.044	[1.037-1.051]	NR [8098588] (imputed)	N
797	chr6	27839745	27839746	rs200956	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	HIST1H3I	rs200956-C	NR	6E-10		0.0251491	[0.017-0.033] unit decrease	Affymetrix [323858] (imputed)	N
797	chr6	27839745	27839746	rs200956	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	HIST1H3I	rs200956-C	NR	7E-10		0.0250795	[0.017-0.033] unit decrease	Affymetrix [127266] (imputed)	N
797	chr6	27840925	27840926	rs45509595	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p22.1	NR	rs45509595-C	0.0906	5E-9	(EA)	0.0684	[0.045-0.091] unit decrease	Illumina [~ 11800000] (imputed)	N
797	chr6	27846743	27846744	rs483143	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	6p22.1	NR	rs483143-C	0.116864351898143	1E-22		0.014001886	[0.011-0.017] unit decrease	NR [NR]	N
797	chr6	27846743	27846744	rs483143	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	6p22.1	NR	rs483143-C	NR	1E-8		0.02006	[0.013-0.027] unit decrease	Affymetrix [10847151] (imputed)	N
797	chr6	27846743	27846744	rs483143	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p22.1	NR	rs483143-C	0.1277	8E-12		0.0121	[0.0086-0.0156] unit decrease	NR [7666894] (imputed)	N
797	chr6	27846743	27846744	rs483143	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	6p22.1	BTN2A2	rs483143-C	0.131472	4E-9		5.9	z score decrease	NR [10847151] (imputed)	N
797	chr6	27850713	27850714	rs493161	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma and major depressive disorder	46,802 European ancestry asthma cases, 59,851 European ancestry major depressive disorder cases, 460,635 European ancestry controls	NA	6p22.1	HIST1H2AI, HIST1H2AJ, HIST1H2AK, HIST1H2AM, HIST1H2BL, HIST1H2BM, HIST1H2BO, HIST1H3H, HIST1H3I, HIST1H3J, HIST1H4J, HIST1H4K, HIST1H4L, LINC01012, NKAPL, OR2B2, OR2B6, PGBD1, TOB2P1, ZKSCAN8, ZNF165, ZNF184, ZNF192P1, ZSCAN9, ZSCAN12P1, ZSCAN16, ZSCAN26, ZSCAN31, HIST1H2BN, LOC100131289, ZNF391, ZSCAN16-AS1, HIST1H2AL, ZKSCAN4, HIST1H1B	rs493161-?	NR	1E-9				Affymetrix [up to 13554551] (imputed)	N
797	chr6	27852977	27852978	rs9461418	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	6p22.1		rs9461418-A	0.014657	9E-10		0.05571369	[0.038-0.074] unit increase	Affymetrix [93095623] (imputed)	N
797	chr6	27854759	27854760	rs169287	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	6p22.1	HIST1H4L, HIST1H3J	rs169287-C		3E-8		0.19	unit decrease	Affymetrix [at least 2696785] (imputed)	N
797	chr6	27854759	27854760	rs169287	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	6p22.1	HIST1H4L, HIST1H3J	rs169287-C		5E-12		0.215	unit increase	Affymetrix [at least 2696785] (imputed)	N
797	chr6	27858836	27858837	rs200972	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA	6p22.1	NR	rs200972-?	NR	6E-7		0.0386	[0.024-0.054] unit increase	Illumina [at least 560000] (imputed)	N
797	chr6	27861669	27861670	rs13219787	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular volume	up to 29,946 European ancestry individuals, up to 6150 African American individuals, 15,074 East Asian individuals.	16,389 individuals of European and African American ancestry.	6p22.1	NR	rs13219787-?	NR	1E-9				NR [2500000] (imputed)	N
797	chr6	27861669	27861670	rs13219787	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular hemoglobin	up to 21,020 European ancestry individuals, up to 3,621 African American individuals, up to 15,062 East Asian individuals.	16,389 individuals of European and African American ancestry.	6p22.1	NR	rs13219787-?	NR	1E-8				NR [2500000] (imputed)	N
797	chr6	27861669	27861670	rs13219787	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Hemoglobin levels	up to 40,258 European ancestry individuals, 16,128 African American individuals, up to 15,252 East Asian ancestry individuals.	16,389 European and African American individuals	6p22.1	NR	rs13219787-?	NR	1E-8				Affymetrix, Illumina [2500000] (imputed)	N
797	chr6	27862151	27862152	rs200966	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs200966-?		1E-8	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
797	chr6	27866383	27866384	rs200965	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	6p22.1	NR	rs200965-A	NR	1E-8		5.728	z score decrease	Affymetrix [10847151] (imputed)	N
797	chr6	27866942	27866943	rs200964	33608531	Wu Y	2021-02-19	Nat Commun	GWAS of peptic ulcer disease implicates Helicobacter pylori infection, other gastrointestinal disorders and depression.	Gastroesophageal reflux disease, peptic ulcer disease and/or corresponding medications and treatment	90,175 European ancestry cases, 366,152 European ancestry controls	NA	6p22.1	NR	rs200964-G	0.81	3E-13		1.05		NR [8546065] (imputed)	N
797	chr6	27866942	27866943	rs200964	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs200964-?		8E-9	(Superior corona radiata)			NR [8955960] (imputed)	N
797	chr6	27868791	27868792	rs13199649	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	6p22.1	HIST1H2BO, OR2B2	rs13199649-T	0.077072293	2E-10		1.1453075	[1.098230655-1.194402414]	Illumina [10439017] (imputed)	N
797	chr6	27869630	27869631	rs1873212	33106546	Johnson TA	2020-10-26	J Hum Genet	Association of an IGHV3-66 gene variant with Kawasaki disease.	Kawasaki disease	1,276 East Asian ancestry cases, 5,086 East Asian ancestry controls	2,152 East Asian ancestry cases, 2,751 East Asian ancestry controls	6p22.1	TRX-CAT1-7	rs1873212-T	NR	2E-10		1.27	[1.18-1.36]	Affymetrix, Illumina [6265045] (imputed)	N
797	chr6	27877445	27877446	rs188015	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs188015-?		4E-8	(Posterior corona radiata )			NR [8955960] (imputed)	N
797	chr6	27878267	27878268	rs72848752	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	OR2B2	rs72848752-C	NR	2E-13		0.0410804	[0.03-0.052] unit decrease	Affymetrix [321016] (imputed)	N
797	chr6	27879981	27879982	rs61742093	33909500	Moll M	2021-04-28	Am J Physiol Lung Cell Mol Physiol	A Systematic Analysis of Protein-altering Exonic Variants in Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease	up to 31,465 European ancestry cases, up to 203,688 European ancestry controls, up to 1,413 African ancestry cases, up to 6,080 African ancestry controls, up to 287 East Asian ancestry cases, up to 7,484 East Asian ancestry controls, up to 61 Hispanic cases, up to 613 Hispanic controls	NA	6p22.1	OR2B2	rs61742093-G	0.11	6E-11		1.11	[1.08 -1.14]	Illumina [at least 109036]	N
797	chr6	27879981	27879982	rs61742093	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p22.1	OR2B2	rs61742093-G		1E-44		0.05	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
797	chr6	27879981	27879982	rs61742093	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in diabetes	70,762 European ancestry individuals, 20,967 African American individuals	NA	6p22.1	OR2B2	rs61742093-A	0.92	1E-8		0.926	[0.61-1.24] unit increase	Affymetrix [NR] (imputed)	N
797	chr6	27883268	27883269	rs1497525	33654092	Shigemizu D	2021-03-03	Transl Psychiatry	Ethnic and trans-ethnic genome-wide association studies identify new loci influencing Japanese Alzheimer's disease risk.	Alzheimer's disease	3,962 Japanese ancestry cases, 4,074 Japanese ancestry controls, 21,982 European ancestry cases, 41,944 European ancestry controls	1,216 Japanese ancestry cases, 2,446 Japanese ancestry controls	6p22.1	OR2B2	rs1497525-?	NR	2E-8				Affymetrix [2067592] (imputed)	N
797	chr6	27883738	27883748	rs142012776	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p22.1	OR2B2	rs142012776-CTTGCAATTGT	0.9333	5E-6		0.0591	[0.034-0.085] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
797	chr6	27884011	27884012	rs13218875	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	6p22.1	NR	rs13218875-T	0.07	3E-11		1.2	[1.14-1.26]	Illumina [8468885] (imputed)	N
797	chr6	27884011	27884012	rs13218875	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Squamous cell lung carcinoma	7,426 European ancestry cases, 55,627 European ancestry controls	NA	6p22.1	OR2B2, OR2B6	rs13218875-T	0.081266074	2E-10		1.238864	[1.159386415-1.323789655]	Illumina [10439017] (imputed)	N
797	chr6	27884011	27884012	rs13218875	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in ever smokers	23,223 European ancestry cases,  16,964 European ancestry controls	NA	6p22.1	OR2B2, OR2B6	rs13218875-T	0.080928069	1E-8		1.16643	[1.106256975-1.229875951]	Illumina [10439017] (imputed)	N
797	chr6	27885355	27885356	rs731132	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Liver iron content	32,858 European ancestry individuals	NA	6p22.1	OR2B2	rs731132-?	NR	1E-20	(conditional)	0.0736	NR mg/g decrease	Affymetrix [9390170] (imputed)	N
797	chr6	27904344	27904345	rs76106973	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	6p22.1	OR2B6	rs76106973-A	0.0214	3E-8		0.7747	[0.5-1.05] mmHg increase	Affymetrix [NR] (imputed)	N
797	chr6	27912436	27912437	rs149583087	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium HDL	115,082 European ancestry individuals	NA	6p22.1		rs149583087-G	0.886518	4E-9		0.0353188	[0.024-0.047] unit increase	NR [11722792] (imputed)	N
798	chr6	27941386	27941387	rs13214703	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	6p22.1	OR2B6	rs13214703-T	0.927	2E-15		0.0196	[0.015-0.025] unit increase	Affymetrix, Illumina [33811881] (imputed)	N
798	chr6	27962383	27962384	rs156741	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6p22.1		rs156741-?	NR	4E-6		1.26735	[1.17-1.37]	NR [685523]	N
798	chr6	27967088	27967089	rs156743	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	6p22.1		rs156743-?	NR	5E-9				NR [NR]	N
798	chr6	27967088	27967089	rs156743	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder	16,823 European ancestry cases, 25,632 European ancestry controls	NA	6p22.1		rs156743-?	NR	3E-9		1.07294	[1.05-1.1]	NR [NR]	N
798	chr6	27973364	27973365	rs140386588	32185793	Yan J	2020-03-17	Clin Genet	A genome-wide association study identifies FSHR rs2300441 associated with follicle-stimulating hormone levels.	Follicle stimulating hormone levels	2,590 Han Chinese ancestry individuals	NA	6p22.1	NR	rs140386588-A	0.01181	5E-6		1.006	NR unit increase	Affymetrix [3101376] (imputed)	N
798	chr6	27989251	27989252	rs142965311	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	6p22.1	ZNF165	rs142965311-C	0.886342	4E-19		0.0268229	[0.021-0.033] unit increase	Affymetrix [NR] (imputed)	N
798	chr6	27991006	27991007	rs149979	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	6p22.1	NR	rs149979-A	0.229781730844995	4E-11		0.0095543815	[0.0067-0.0124] unit decrease	NR [NR]	N
798	chr6	27991006	27991007	rs149979	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	6p22.1	NR	rs149979-A	0.229781730844995	1E-10		0.012256198	[0.0085-0.016] unit decrease	NR [NR]	N
798	chr6	27991006	27991007	rs149979	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	6p22.1	NR	rs149979-A	0.229781730844995	1E-10		0.010200632	[0.0071-0.0133] unit decrease	NR [NR]	N
798	chr6	27994415	27994416	rs71559067	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	6p22.1	ZNF165	rs71559067-A	0.903	8E-9		0.0032	[0.002-0.0044] unit increase	Affymetrix [NR] (imputed)	N
798	chr6	27994415	27994416	rs71559067	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	6p22.1	ZNF165	rs71559067-A	0.9027	1E-7	(EA)	0.0032	[0.002-0.0044] unit increase	Affymetrix [NR] (imputed)	N
798	chr6	27998257	27998258	rs149990	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	6p22.1		rs149990-?	NR	7E-9				NR [NR]	N
798	chr6	27998814	27998815	rs74994185	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs74994185-?		6E-6		1.06	[1.04-1.09]	Illumina [7645193] (imputed)	N
798	chr6	28002387	28002388	rs149943	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	6p22.1		rs149943-?	NR	5E-9				NR [NR]	N
798	chr6	28002387	28002388	rs149943	29899525	Klimentidis YC	2018-06-13	Int J Obes (Lond)	Genome-wide association study of habitual physical activity in over 377,000 UK Biobank participants identifies multiple variants including CADM2 and APOE.	Moderate to vigorous physical activity levels	377,234 European ancestry individuals	NA	6p22.1	ZNF165	rs149943-G	0.85	2E-9		0.019	unit increase	Affymetrix [11800000] (imputed)	N
798	chr6	28006178	28006179	rs17709192	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	6p22.1		rs17709192-?	NR	5E-8				Affymetrix [NR] (imputed)	N
798	chr6	28011515	28011516	rs149949	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	6p22.1		rs149949-?	NR	7E-9				NR [NR]	N
798	chr6	28011515	28011516	rs149949	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling guilty	373,380 European ancestry individuals	NA	6p22.1	NR	rs149949-T	0.146259	3E-8		5.54	z score increase	NR [10847151] (imputed)	N
798	chr6	28011515	28011516	rs149949	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Squamous cell lung carcinoma	7,426 European ancestry cases, 55,627 European ancestry controls	NA	6p22.1	OR2B6, ZNF165	rs149949-C	0.102170669	2E-10		1.2057247	[1.138576585-1.27683293]	Illumina [10439017] (imputed)	N
798	chr6	28011651	28011652	rs202906	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	6p22.1		rs202906-?	NR	7E-9				NR [NR]	N
798	chr6	28011651	28011652	rs202906	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs202906-?		1E-8	(Superior corona radiata)			NR [8955960] (imputed)	N
798	chr6	28011651	28011652	rs202906	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p22.1	HIST1H1B, HIST1H2AI, HIST1H2AJ, HIST1H2AK, HIST1H2AL, HIST1H2AM, HIST1H2BL, HIST1H2BM, HIST1H2BN, HIST1H2BO, HIST1H3H, HIST1H3I, HIST1H3J, HIST1H4J, HIST1H4K, HIST1H4L, LINC01012, LOC100131289, NKAPL, OR2B2, OR2B6, PGBD1, TOB2P1, ZKSCAN4, ZKSCAN8, ZNF165, ZNF184, ZNF192P1, ZSCAN12P1, ZSCAN16, ZSCAN16-AS1, ZSCAN26, ZSCAN31, ZSCAN9	rs202906-T		3E-16		1.13	[1.10-1.17]	Affymetrix, Illumina [NR]	N
798	chr6	28012082	28012083	rs182087722	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p22.1	ZKSCAN8, ZNF165, ZNF192P1, ZSCAN12P1, ZSCAN16, ZSCAN16-AS1	rs182087722-A		3E-8		1.09	[1.06-1.13]	Affymetrix, Illumina [NR]	N
798	chr6	28018624	28018625	rs202904	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	6p22.1	OR2B8P	rs202904-C	NR	1E-9	(EA)	1.08	[1.06-1.1]	Illumina [6627481] (imputed)	N
798	chr6	28019664	28019665	rs76079263	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	6p22.1	ZNF165	rs76079263-G	0.910149	4E-21		0.0346868	[0.027-0.042] unit increase	Affymetrix [NR] (imputed)	N
798	chr6	28019664	28019665	rs76079263	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	6p22.1	ZNF165	rs76079263-G	0.910178	4E-19		0.0327108	[0.026-0.04] unit increase	Affymetrix [NR] (imputed)	N
798	chr6	28019664	28019665	rs76079263	27846281	Galesloot TE	2016-11-15	PLoS One	Meta-GWAS and Meta-Analysis of Exome Array Studies Do Not Reveal Genetic Determinants of Serum Hepcidin.	Hepcidin/ferritin ratio	1495 European ancestry individuals without iron deficiency or clinical inflammation, 324 European ancestry individuals, 1206 Val Borbera (founder/genetic isolated) individuals without iron deficiency or clinical inflammation, 274 Val Borbera (founder/genetic isolated) individuals, 2,695 European ancestry individuals without iron deficiency or clinical inflammation, 207 individuals	NA	6p22.1	ZNF165	rs76079263-C	0.0724	8E-6	(Subset)	0.2018	[0.11-0.29] unit decrease	Illumina [up to 38043574] (imputed)	N
798	chr6	28019664	28019665	rs76079263	27846281	Galesloot TE	2016-11-15	PLoS One	Meta-GWAS and Meta-Analysis of Exome Array Studies Do Not Reveal Genetic Determinants of Serum Hepcidin.	Hepcidin/ferritin ratio	1495 European ancestry individuals without iron deficiency or clinical inflammation, 324 European ancestry individuals, 1206 Val Borbera (founder/genetic isolated) individuals without iron deficiency or clinical inflammation, 274 Val Borbera (founder/genetic isolated) individuals, 2,695 European ancestry individuals without iron deficiency or clinical inflammation, 207 individuals	NA	6p22.1	ZNF165	rs76079263-C	0.0718	6E-6		0.1885	[0.11-0.27] unit decrease	Illumina [up to 38043574] (imputed)	N
798	chr6	28020819	28020820	rs172166	23247143	Yu B	2012-12-16	Circ Cardiovasc Genet	Association of genome-wide variation with highly sensitive cardiac troponin-T levels in European Americans and Blacks: a meta-analysis from atherosclerosis risk in communities and cardiovascular health studies.	Cardiac Troponin-T levels	9,491 European ancestry individuals, up to 2,053 African American individuals	NA	6p22.1	OR2B7P	rs172166-C	NR	5E-6	(Continuous Variable)	0.04	[0.04-0.06] ug/L decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
798	chr6	28025925	28025926	rs35949109	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	6p22.1		rs35949109-?	NR	1E-8				NR [NR]	N
798	chr6	28037019	28037020	rs149957	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	6p22.1	Intergenic	rs149957-T	0.0753	4E-8	(MTAG)	0.0186	[0.012-0.025] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
798	chr6	28040818	28040819	rs203869	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	6p22.1	NR	rs203869-T	0.372763	8E-9		0.042131353	[0.028-0.056] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
798	chr6	28042273	28042274	rs9348792	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	6p22.1	OR1F12, RP1-313I6.12	rs9348792-T	0.0371	1E-15		0.07464625	[0.056-0.093] unit decrease	Affymetrix [~ 2500000] (imputed)	N
799	chr6	28053977	28053978	rs200718368	30175238	Jackson VE	2018-01-12	Wellcome Open Res	Meta-analysis of exome array data identifies six novel genetic loci for lung function.	Lung function (FEV1/FVC)	60,749 European ancestry individuals, 7,721 African ancestry individuals	111,556 European ancestry individuals	6p22.1	ZNF165	rs200718368-C	2.5E-4	4E-6		4.603	unit decrease	Illumina [179215]	N
799	chr6	28054197	28054198	rs17767294	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	6p22.1	ZNF165	rs17767294-A	0.9226	2E-10		0.0224	[0.016-0.029] unit increase	Affymetrix [18391927] (imputed)	N
799	chr6	28054197	28054198	rs17767294	28892059	Chang D	2017-09-11	Nat Genet	A meta-analysis of genome-wide association studies identifies 17 new Parkinson's disease risk loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	5,851 European ancestry cases, 5,866 European ancestry controls	6p22.1	NR	rs17767294-G	NR	2E-7		1.107	[1.07-1.15]	Illumina [11933700] (imputed)	N
799	chr6	28054464	28054465	rs147493146	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	6p22.1		rs147493146-C	0.913	5E-179		0.56	[-0.6--0.52] % decrease	Affymetrix [NR] (imputed)	N
799	chr6	28059457	28059458	rs3734572	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	6p22.1	NR	rs3734572-C	0.0394579031866205	5E-15		0.018457636	[0.014-0.023] unit increase	NR [NR]	N
799	chr6	28059457	28059458	rs3734572	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	6p22.1	NR	rs3734572-C	0.0394579031866205	4E-11		0.022885118	[0.016-0.03] unit increase	NR [NR]	N
799	chr6	28059457	28059458	rs3734572	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	6p22.1	NR	rs3734572-C	0.0394579031866205	1E-9		0.028246256	[0.019-0.037] unit increase	NR [NR]	N
799	chr6	28059457	28059458	rs3734572	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	6p22.1	NR	rs3734572-C	0.0394579031866205	2E-11		0.019401254	[0.014-0.025] unit increase	NR [NR]	N
799	chr6	28060238	28060239	rs13197574	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p22.1	NR	rs13197574-C	0.1103	1E-11		0.0128	[0.0091-0.0165] unit decrease	NR [7666894] (imputed)	N
799	chr6	28060238	28060239	rs13197574	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p22.1	ZNF165, LOC100129195	rs13197574-G	0.208	3E-17				Illumina [118177]	N
799	chr6	28070997	28070998	rs13437444	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs13437444-?		4E-9	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
799	chr6	28070997	28070998	rs13437444	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs13437444-?		3E-9	(Posterior corona radiata )			NR [8955960] (imputed)	N
799	chr6	28070997	28070998	rs13437444	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs13437444-?		5E-9	(Posterior corona radiata )			NR [8955960] (imputed)	N
799	chr6	28073880	28073881	rs34662244	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	6p22.1	NR	rs34662244-A	0.07	4E-11		1.2	[1.14-1.26]	Illumina [8468885] (imputed)	N
799	chr6	28073880	28073881	rs34662244	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p22.1	NR	rs34662244-A	0.092	3E-9	(EA)	0.0691	[0.046-0.092] unit decrease	Illumina [~ 11800000] (imputed)	N
799	chr6	28073880	28073881	rs34662244	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA	6p22.1	NR	rs34662244-?	NR	1E-6		0.0595	[0.035-0.084] unit increase	Illumina [at least 560000] (imputed)	N
799	chr6	28073880	28073881	rs34662244	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in ever smokers	23,223 European ancestry cases,  16,964 European ancestry controls	NA	6p22.1	ZSCAN12P1, ZSCAN16-AS1	rs34662244-A	0.085998654	2E-9		1.1755702	[1.1152522-1.239150684]	Illumina [10439017] (imputed)	N
799	chr6	28074900	28074901	rs35952432	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	6p22.1	ZSCAN12P1, ZSCAN16-AS1	rs35952432-T	0.085445384	6E-11		1.1477143	[1.101269972-1.196117299]	Illumina [10439017] (imputed)	N
799	chr6	28079597	28079598	rs13203816	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	6p22.1		rs13203816-?	NR	3E-8				NR [NR]	N
799	chr6	28080776	28080777	rs68188794	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Major depressive disorder (MTAG)	119,754 European ancestry individuals	NA			rs68188794-?	NR	2E-18				NR [2625067]	N
799	chr6	28080776	28080777	rs68188794	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Bipolar disorder (MTAG)	1,450,972 European ancestry individuals	NA			rs68188794-?	NR	2E-19				NR [2625067]	N
799	chr6	28080776	28080777	rs68188794	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Bipolar disorder (MTAG)	at least 20,352 European ancestry cases, at least 31,358 European ancestry controls	NA		NR	rs68188794-T	0.9314	2E-21		0.21067278	[0.17-0.25] unit increase	NR [NR]	N
799	chr6	28081757	28081758	rs34371502	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	6p22.1		rs34371502-?	NR	3E-8				NR [NR]	N
799	chr6	28084615	28084616	rs139757732	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	6p22.1		rs139757732-T	0.95599	3E-8		0.029	[0.019-0.039] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
799	chr6	28084615	28084616	rs139757732	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p22.1	NR	rs139757732-?	NR	6E-7		0.1474	[0.09-0.204] unit decrease	Illumina [at least 560000] (imputed)	N
799	chr6	28089730	28089731	rs66886492	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	6p22.1	NR	rs66886492-T	0.101180196330638	3E-15		0.017245498	[0.013-0.022] unit decrease	NR [NR]	N
799	chr6	28089730	28089731	rs66886492	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	ZSCAN16-AS1	rs66886492-T	NR	2E-15		7.943	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
799	chr6	28103408	28103409	rs35111391	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular volume	22,267 Amish, White ancestry individuals, 447 Asian ancestry individuals, 12,285 Black individuals, 13,831 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	6p22.1		rs35111391-T	NR	2E-9		0.54	[0.36-0.72] unit increase	Illumina [97506867]	N
799	chr6	28103408	28103409	rs35111391	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular hemoglobin	20,714 Amish, White ancestry individuals, 447 Asian ancestry individuals, 11,246 Black individuals, 13,834 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	6p22.1		rs35111391-T	NR	2E-16		0.3	[0.22-0.38] unit increase	Illumina [94681438]	N
799	chr6	28105033	28105034	rs79476506	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs79476506-?		7E-6		1.06	[1.03-1.09]	Illumina [7645193] (imputed)	N
799	chr6	28105033	28105034	rs79476506	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs79476506-?		1E-6		1.79	[1.41-2.26]	Illumina [7645193] (imputed)	N
799	chr6	28106826	28106827	rs4713145	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Help-seeking from a psychiatrist	36,286 British ancestry cases, 297,126 British ancestry controls	NA	6p22.1	NR	rs4713145-T	0.756	5E-11		1.0626993	NR	NR [5276842] (imputed)	N
799	chr6	28106826	28106827	rs4713145	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Help-seeking from a GP	113,262 British ancestry cases, 219,360 British ancestry controls	NA	6p22.1	NR	rs4713145-?	NR	2E-7		1.0319917	[1.02-1.04]	NR [5276842] (imputed)	N
799	chr6	28117330	28117331	rs62620225	35215271	Almandil NB	2022-01-27	Pharmaceuticals (Basel)	Integration of Transcriptome and Exome Genotyping Identifies Significant Variants with Autism Spectrum Disorder.	Autism spectrum disorder	70 Arab ancestry cases, 132 Arab ancestry controls	NA	6p22.1	NA	rs62620225-T	0.1591	8E-6		0.04097	[0.005498-0.3054]	Illumina [243345]	N
799	chr6	28117330	28117331	rs62620225	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	6p22.1	NR	rs62620225-T	0.0396118146904538	6E-12		0.023400595	[0.017-0.03] unit increase	NR [NR]	N
799	chr6	28117602	28117602	rs560097346	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	6p22.1	ZKSCAN8	rs560097346-CT	0.1531	2E-21		0.05021958	[0.04-0.061] unit decrease	Affymetrix [~ 2500000] (imputed)	N
799	chr6	28124113	28124114	rs13205911	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	6p22.1		rs13205911-?	NR	2E-8				NR [NR]	N
799	chr6	28129231	28129232	rs13197176	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	6p22.1		rs13197176-?	NR	2E-8				NR [NR]	N
799	chr6	28129231	28129232	rs13197176	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	ZNF192P1	rs13197176-T	NR	3E-16		0.0402787	[0.031-0.05] unit decrease	Affymetrix [323858] (imputed)	N
799	chr6	28129231	28129232	rs13197176	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	ZNF192P1	rs13197176-T	NR	8E-16		0.0396034	[0.03-0.049] unit decrease	Affymetrix [127266] (imputed)	N
799	chr6	28129788	28129789	rs1150668	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	6p22.1	NR	rs1150668-?		1E-8	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
799	chr6	28129788	28129789	rs1150668	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	6p22.1	ZKSCAN8	rs1150668-T	0.5672	3E-8		0.011196799	[0.0072-0.0152] unit increase	Affymetrix [11514654] (imputed)	N
799	chr6	28129788	28129789	rs1150668	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	6p22.1	NR	rs1150668-G	0.419	6E-15		0.00858032	[0.0064-0.0107] unit decrease	NR [9732723] (imputed)	N
799	chr6	28129788	28129789	rs1150668	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	6p22.1	NR	rs1150668-G	0.419	9E-13		0.018510304	[0.013-0.024] unit decrease	NR [~ 10000000] (imputed)	N
799	chr6	28129788	28129789	rs1150668	23449627	Cousminer DL	2013-02-27	Hum Mol Genet	Genome-wide association and longitudinal analyses reveal genetic loci linking pubertal height growth, pubertal timing and childhood adiposity.	Pubertal anthropometrics	7,161 European ancestry males, 6,879 European ancestry females	5,133 European ancestry males, 4,577 European ancestry females	6p22.1	ZNF	rs1150668-G	0.43	2E-7	(Single Height)	0.06	[0.038-0.082] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
799	chr6	28137498	28137499	rs72846794	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	6p22.1		rs72846794-?	NR	2E-8				NR [NR]	N
799	chr6	28138828	28138829	rs148287449	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Fibroblast growth factor basic levels	7,565 Finnish ancestry individuals	NA	6p22.1	NR	rs148287449-G		3E-6		0.2013	[0.12-0.29] SD units decrease	NR [10700000] (imputed)	N
799	chr6	28140292	28140293	rs16893741	33002439	Jin G	2020-10-01	Lancet Oncol	Genetic risk, incident gastric cancer, and healthy lifestyle: a meta-analysis of genome-wide association studies and prospective cohort study.	Gastric cancer	10,254 Han Chinese ancestry cases, 10,914 Han Chinese ancestry controls	NA	6p22.1	NR	rs16893741-T	0.85	2E-6		0.87	NR	Affymetrix, Illumina [6957974] (imputed)	N
799	chr6	28144831	28144832	rs35781323	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	6p22.1		rs35781323-?	NR	2E-8				NR [NR]	N
799	chr6	28150877	28150878	rs34832585	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	6p22.1	NR	rs34832585-C	0.0725646	2E-18		0.10676706	[0.083-0.131] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
799	chr6	28162468	28162469	rs1150687	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	6p22.1	LRRC16A, SCGN, SLC17A4, SLC17A1, SLC17A3, SLC17A2, TRIM38, HIST1H1A, HIST1H4A, HIST1H3A, HIST1H3B, HIST1H2AB, HIST1H4B, HIST1H2BB, HIST1H3C, HIST1H1C, HFE, HIST1H4C, HIST1H1T, HIST1H2BC, HIST1H2AC, HIST1H1E, HIST1H2BD, HIST1H2BE, HIST1H2BF, HIST1H4G, HIST1H3G, HIST1H4H, BTN3A2, BTN2A2, BTN3A1, BTN2A3P, BTN3A3, BTN2A1, BTN1A1, HMGN4, ABT1, ZNF322, HIST1H2BJ, HIST1H2BK, HIST1H2AH, PRSS16, POM121L2, ZNF204P, ZNF391, ZNF184, HIST1H2BL, HIST1H3H, HIST1H2AJ, HIST1H2BM, HIST1H4J, HIST1H4K, HIST1H2BN, HIST1H2AL, HIST1H1B, HIST1H3I, HIST1H4L, HIST1H3J, HIST1H2AM, OR2B2, OR2B6, ZNF165, ZSCAN16, ZKSCAN8, ZSCAN9, ZKSCAN4, NKAPL, ZSCAN26, PGBD1, ZSCAN31, ZKSCAN3, ZSCAN12, ZSCAN23, GPX6, HLA-H, HLA-J, ZNRD1, DPCR1, VARS2, NFKBIL1, PBX2, HLA-DRB5, HLA-DQA1, PHF1, NUDT3, RPS10-NUDT3, PACSIN1, SPDEF, SNRPC, ANKS1A, ZNF76	rs1150687-?		4E-34				Affymetrix, Illumina [NR] (imputed)	N
799	chr6	28162468	28162469	rs1150687	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	6p22.1	ZNF192P1, TRNA_Ser	rs1150687-T	0.6192	1E-11		6.784	[NR] z score increase	Affymetrix, Illumina [~ 11000000] (imputed)	N
799	chr6	28162779	28162780	rs1150688	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p22.1	GPX5, GPX6, HCG14, HIST1H1B, HIST1H2AI, HIST1H2AJ, HIST1H2AK, HIST1H2AL, HIST1H2AM, HIST1H2BL, HIST1H2BM, HIST1H2BN, HIST1H2BO, HIST1H3H, HIST1H3I, HIST1H3J, HIST1H4J, HIST1H4K, HIST1H4L, LINC01012, LINC01556, LINC01623, LOC100129636, LOC100131289, NKAPL, OR2B2, OR2B3, OR2B6, OR2J2, OR2J3, OR2W1, PGBD1, POM121L2, TOB2P1, TRIM27, VN1R10P, ZBED9, ZKSCAN3, ZKSCAN4, ZKSCAN8, ZNF165, ZNF184, ZNF192P1, ZNF204P, ZNF311, ZNF391, ZSCAN12, ZSCAN12P1, ZSCAN16, ZSCAN16-AS1, ZSCAN23, ZSCAN26, ZSCAN31, ZSCAN9	rs1150688-T		8E-11		1.07	[1.05-1.09]	Affymetrix, Illumina [NR]	N
799	chr6	28168032	28168033	rs1150691	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	6p22.1	NR	rs1150691-A		3E-11		0.07	[0.05-0.09] unit increase	NR [NR]	N
799	chr6	28168940	28168941	rs55635926	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	6p22.1	ZKSCAN8, ZSCAN9	rs55635926-G	0.089	3E-10		6.32	z-score increase	Affymetrix [4312306] (imputed)	N
799	chr6	28169240	28169241	rs13195291	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	6p22.1		rs13195291-?	NR	3E-8				NR [NR]	N
799	chr6	28174756	28174757	rs13197633	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	6p22.1		rs13197633-?	NR	2E-8				NR [NR]	N
799	chr6	28174756	28174757	rs13197633	33204752	Butler-Laporte G	2020-09-24	Open Forum Infect Dis	Genetic Determinants of Antibody-Mediated Immune Responses to Infectious Diseases Agents: A Genome-Wide and HLA Association Study.	Varicella zoster virus glycoproteins E and I antibody levels	7,595 White British ancestry individuals	NA	6p22.1	TOB2P1	rs13197633-G	0.88	1E-15		0.2	[0.15-0.25] unit decrease	NR [25472218] (imputed)	N
799	chr6	28175548	28175549	rs1150696	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs1150696-?		4E-8	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
800	chr6	28187465	28187466	rs138854355	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Red blood cell count	108,794 Japanese ancestry individuals	NA	6p22.1	TOB2P1	rs138854355-?	NR	4E-8		0.06824	[0.044-0.093] unit increase novel	Illumina [6108953] (imputed)	N
800	chr6	28187631	28187632	rs35001169	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	6p22.1		rs35001169-?	NR	2E-8				NR [NR]	N
800	chr6	28191056	28191057	rs9366717	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs9366717-?		4E-8	(Posterior corona radiata )			NR [8955960] (imputed)	N
800	chr6	28191287	28191288	rs35656932	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	6p22.1		rs35656932-?	NR	2E-8				NR [NR]	N
800	chr6	28193101	28193102	rs34243448	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	6p22.1		rs34243448-?	NR	2E-8				NR [NR]	N
800	chr6	28197185	28197186	rs34477097	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs34477097-?		2E-8	(Posterior corona radiata )			NR [8955960] (imputed)	N
800	chr6	28197185	28197186	rs34477097	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	6p22.1	NR	rs34477097-?		3E-8	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
800	chr6	28197885	28197886	rs34787248	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	ZSCAN9	rs34787248-T	NR	2E-8		0.0222114	[0.014-0.03] unit decrease	Affymetrix [323858] (imputed)	N
800	chr6	28197885	28197886	rs34787248	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	ZSCAN9	rs34787248-T	NR	4E-8		0.0217131	[0.014-0.029] unit decrease	Affymetrix [127266] (imputed)	N
800	chr6	28197885	28197886	rs34787248	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p22.1	HIST1H1B, HIST1H2AJ, HIST1H2AK, HIST1H2AL, HIST1H2AM, HIST1H2BM, HIST1H2BN, HIST1H2BO, HIST1H3I, HIST1H3J, HIST1H4J, HIST1H4K, HIST1H4L, NKAPL, OR2B2, OR2B6, PGBD1, TOB2P1, ZKSCAN3, ZKSCAN4, ZKSCAN8, ZNF165, ZNF192P1, ZSCAN12P1, ZSCAN16, ZSCAN16-AS1, ZSCAN26, ZSCAN31, ZSCAN9	rs34787248-?		2E-11		1.0869565	[1.06-1.12]	Affymetrix, Illumina [NR]	N
800	chr6	28199763	28199764	rs11967137	33568662	Dashti HS	2021-02-10	Nat Commun	Genetic determinants of daytime napping and effects on cardiometabolic health.	Daytime nap	452,633 European ancestry individuals	541,333 European ancestry individuals	6p22.1	ZSCAN9	rs11967137-A		3E-18		0.0095	[0.0073-0.0117] unit increase	Affymetrix [13304133] (imputed)	N
800	chr6	28201530	28201531	rs13204012	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	6p22.1		rs13204012-?	NR	2E-8				NR [NR]	N
800	chr6	28201530	28201531	rs13204012	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	6p22.1	NR	rs13204012-A	0.07	3E-12		1.22	[1.16-1.28]	Illumina [8468885] (imputed)	N
800	chr6	28203055	28203056	rs13205211	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	6p22.1		rs13205211-?	NR	2E-8				NR [NR]	N
800	chr6	28203055	28203056	rs13205211	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p22.1	NR	rs13205211-G	0.11	1E-8		1.11	[1.07-1.15]	Affymetrix [9886854] (imputed)	N
800	chr6	28203055	28203056	rs13205211	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p22.1	NR	rs13205211-G	0.11	7E-10			[NR]	Affymetrix [9886854] (imputed)	N
800	chr6	28203055	28203056	rs13205211	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in non-current smokers	16,488 European ancestry cases, 169,688 European ancestry controls	NA	6p22.1	NR	rs13205211-G	0.11	1E-8		1.11	[1.07-1.15]	Affymetrix [9886854] (imputed)	N
800	chr6	28203299	28203300	rs9380069	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	NR	rs9380069-?	NR	7E-8		5.392	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
800	chr6	28204818	28204819	rs116043036	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial squamous cell lung carcinoma	367 European ancestry cases, 31,563 European ancestry controls	NA	6p22.1	ZSCAN9	rs116043036-G	0.006	5E-7		5.61	[2.87-10.99]	Illumina [7959153] (imputed)	N
800	chr6	28207990	28207991	rs56057304	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p22.1	NR	rs56057304-?	NR	6E-7		0.1504	[0.092-0.208] unit increase	Illumina [at least 560000] (imputed)	N
800	chr6	28213917	28213918	rs41269287	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	ZKSCAN4	rs41269287-A	NR	1E-8		0.0386557	[0.025-0.052] unit decrease	Affymetrix [321016] (imputed)	N
800	chr6	28214645	28214646	rs62401443	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	ZKSCAN4	rs62401443-C	NR	2E-8		0.0536899	[0.035-0.073] unit decrease	Affymetrix [321016] (imputed)	N
800	chr6	28214697	28214698	rs17720293	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	6p22.1	ZKSCAN4	rs17720293-C	NR	3E-23	(EA)	1.197	[1.16-1.23]	Illumina [6627481] (imputed)	N
800	chr6	28214697	28214698	rs17720293	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA	6p22.1	NR	rs17720293-?	NR	1E-6		0.0569	[0.034-0.08] unit decrease	Illumina [at least 560000] (imputed)	N
800	chr6	28219269	28219270	rs1736904	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	6p22.1		rs1736904-?	NR	8E-9				NR [NR]	N
800	chr6	28219269	28219270	rs1736904	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling guilty	373,380 European ancestry individuals	NA	6p22.1	HFE	rs1736904-A	0.216029	4E-8		5.48	z score decrease	NR [10847151] (imputed)	N
800	chr6	28221263	28221264	rs1679732	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	6p22.1		rs1679732-?	NR	1E-8				NR [NR]	N
800	chr6	28221815	28221816	rs10456362	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	6p22.1		rs10456362-?	NR	2E-8				NR [NR]	N
800	chr6	28221815	28221816	rs10456362	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Basal metabolic rate variance	341,584 European ancestry individuals	NA	6p22.1	ZKSCAN4	rs10456362-?	NR	1E-9				NR [5554549] (imputed)	N
800	chr6	28221815	28221816	rs10456362	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Basal metabolic rate	341,584 European ancestry individuals	NA	6p22.1	ZKSCAN4	rs10456362-?	NR	2E-9				NR [5554549] (imputed)	N
800	chr6	28227603	28227604	rs1635	22037552	Yue WH	2011-10-30	Nat Genet	Genome-wide association study identifies a susceptibility locus for schizophrenia in Han Chinese at 11p11.2.	Schizophrenia	746 Han Chinese ancestry cases, 1,599 Han Chinese ancestry controls	4,027 Han Chinese ancestry cases, 5,603 Han Chinese ancestry controls	6p22.1	NKAPL	rs1635-?	NR	7E-12		1.28	[1.22-1.37]	Illumina [493203]	N
800	chr6	28228341	28228342	rs1679709	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	6p22.1		rs1679709-?	NR	2E-8				NR [NR]	N
800	chr6	28229410	28229411	rs1778511	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	6p22.1		rs1778511-?	NR	1E-8				NR [NR]	N
800	chr6	28229880	28229881	rs1778508	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	6p22.1		rs1778508-?	NR	1E-8				NR [NR]	N
800	chr6	28234596	28234597	rs2799077	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	6p22.1		rs2799077-?	NR	5E-9				NR [NR]	N
800	chr6	28235175	28235176	rs2799079	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	6p22.1		rs2799079-?	NR	1E-8				NR [NR]	N
800	chr6	28238058	28238059	rs67998226	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	6p22.1		rs67998226-?	NR	1E-8				NR [NR]	N
800	chr6	28239914	28239915	rs11965538	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	6p22.1		rs11965538-?	NR	1E-8				NR [NR]	N
800	chr6	28241080	28241081	rs2743555	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	6p22.1		rs2743555-?	NR	1E-8				NR [NR]	N
800	chr6	28242793	28242794	rs1419183	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	6p22.1		rs1419183-?	NR	1E-8				NR [NR]	N
800	chr6	28243041	28243042	rs1150726	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p22.1		rs1150726-G	0.647	2E-16				Affymetrix [10369434] (imputed)	N
800	chr6	28248593	28248594	rs1778477	33106546	Johnson TA	2020-10-26	J Hum Genet	Association of an IGHV3-66 gene variant with Kawasaki disease.	Kawasaki disease	1,276 East Asian ancestry cases, 5,086 East Asian ancestry controls	2,152 East Asian ancestry cases, 2,751 East Asian ancestry controls	6p22.1	PGBD1	rs1778477-T	NR	7E-10		0.77	[0.70-0.83]	Affymetrix, Illumina [6265045] (imputed)	N
800	chr6	28250178	28250179	rs34878803	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	6p22.1		rs34878803-?	NR	8E-9				NR [NR]	N
800	chr6	28250178	28250179	rs34878803	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Squamous cell lung carcinoma	7,426 European ancestry cases, 55,627 European ancestry controls	NA	6p22.1	PGBD1	rs34878803-C	0.077210179	4E-11		1.2508706	[1.170617536-1.336625496]	Illumina [10439017] (imputed)	N
800	chr6	28250954	28250955	rs34396849	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	6p22.1		rs34396849-?	NR	9E-9				NR [NR]	N
800	chr6	28250983	28250984	rs6901575	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	6p22.1		rs6901575-?	NR	6E-9				NR [NR]	N
800	chr6	28257376	28257377	rs13211507	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	6p22.1		rs13211507-?	NR	1E-8				NR [NR]	N
800	chr6	28258207	28258208	rs34691223	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	6p22.1		rs34691223-?	NR	8E-9				NR [NR]	N
800	chr6	28262685	28262686	rs6905391	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	6p22.1		rs6905391-?	NR	4E-11				NR [NR]	N
800	chr6	28262685	28262686	rs6905391	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder	16,823 European ancestry cases, 25,632 European ancestry controls	NA	6p22.1		rs6905391-?	NR	3E-11		0.92867	[0.91-0.95]	NR [NR]	N
800	chr6	28265571	28265572	rs13207345	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	6p22.1		rs13207345-?	NR	1E-8				NR [NR]	N
800	chr6	28268823	28268824	rs33932084	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	6p22.1		rs33932084-?	NR	2E-8				NR [NR]	N
800	chr6	28268823	28268824	rs33932084	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Schizophrenia (MTAG)	940,613 European ancestry individuals	NA	6p22.1		rs33932084-?	NR	3E-28				NR [2625067]	N
800	chr6	28268823	28268824	rs33932084	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Schizophrenia (MTAG)	at least 33,640 European ancestry cases, at least 43,456 European ancestry controls	NA	6p22.1	NR	rs33932084-A	0.9294	3E-29		0.22380155	[0.18-0.26] unit increase	NR [NR]	N
800	chr6	28268823	28268824	rs33932084	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p22.1	PGBD1	rs33932084-G		1E-44		0.05	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
800	chr6	28268823	28268824	rs33932084	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	6p22.1	PGBD1	rs33932084-G	0.9087	6E-15		0.3397	[0.25-0.43] mmHg decrease	Affymetrix [NR] (imputed)	N
800	chr6	28268823	28268824	rs33932084	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p22.1	HIST1H4J, ZKSCAN3, OR2B2, HIST1H2BL, HIST1H2AI, HIST1H4K, HIST1H2BPS2, HIST1H1B, HIST1H3I, HIST1H4L, OR2B8P, OR2B7P, ZSCAN12P1, ZNF165, RP1-265C24.5, ZNF192P1, AL022393.7, ZSCAN26, ZSCAN31, ZSCAN23, GPX6, PGBD1, ZSCAN12, HIST1H4PS1, AL009179.1, HIST1H3H, AL049822.1, HIST1H2AJ, HIST1H2BM, Z98744.1, HIST1H2BN, HIST1H2AK, HIST1H2AL, Z98744.2, HIST1H2BO, HIST1H2AM, RNU7-26P, OR2W6P, RPLP2P1, OR2W4P, OR2W2P, OR1F12, ZSCAN16-AS1, ZSCAN16, ZKSCAN8, AL022393.9, ZNF192P2, TOB2P1, ZSCAN9, NKAPL, RP5-874C20.8, RP5-874C20.7, RP5-874C20.6, COX11P1, ZBED9, LINC00533, AL121932.1, RPSAP2, NOP56P1	rs33932084-G	0.07502518	4E-16	(EA, MHC class I polypeptide-related sequence B)	0.6718	[0.51-0.83] unit decrease	Affymetrix [509946]	N
800	chr6	28270583	28270584	rs2799081	33002439	Jin G	2020-10-01	Lancet Oncol	Genetic risk, incident gastric cancer, and healthy lifestyle: a meta-analysis of genome-wide association studies and prospective cohort study.	Gastric cancer	10,254 Han Chinese ancestry cases, 10,914 Han Chinese ancestry controls	NA	6p22.1	NR	rs2799081-T	0.69	4E-6		1.11	NR	Affymetrix, Illumina [6957974] (imputed)	N
800	chr6	28270583	28270584	rs2799081	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Myopia	106,086 European ancestry cases, 85,757 European ancestry controls	NA	6p22.1	PGBD1, ZSCAN31	rs2799081-?	NR	1E-12		1.0604454	[1.04-1.08]	Illumina [13762925] (imputed)	N
800	chr6	28271972	28271973	rs56189111	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	6p22.1		rs56189111-?	NR	1E-8				NR [NR]	N
800	chr6	28276583	28276584	rs150027890	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	6p22.1		rs150027890-?	NR	5E-9		0.0424	unit increase	NR [NR]	N
800	chr6	28277670	28277671	rs13191786	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	6p22.1		rs13191786-?	NR	2E-8				NR [NR]	N
800	chr6	28278687	28278688	rs34950484	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	6p22.1		rs34950484-?	NR	1E-8				NR [NR]	N
800	chr6	28281893	28281894	rs34661125	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	6p22.1		rs34661125-?	NR	1E-8				NR [NR]	N
800	chr6	28281893	28281894	rs34661125	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	6p22.1	PGBD1, ZSCAN31	rs34661125-A	0.078778393	2E-12		1.1597158	[1.112709654-1.208707736]	Illumina [10439017] (imputed)	N
800	chr6	28285984	28285985	rs13190888	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	6p22.1		rs13190888-?	NR	1E-8				NR [NR]	N
800	chr6	28288784	28288785	rs853685	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	6p22.1		rs853685-?	NR	8E-11				NR [NR]	N
800	chr6	28290327	28290328	rs56075693	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	6p22.1		rs56075693-?	NR	2E-8				NR [NR]	N
800	chr6	28290646	28290647	rs34218844	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	6p22.1		rs34218844-?	NR	2E-8				NR [NR]	N
800	chr6	28295038	28295039	rs853683	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	6p22.1	NR	rs853683-A	0.309145	1E-11		0.051796895	[0.037-0.067] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
800	chr6	28295874	28295875	rs853682	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	6p22.1		rs853682-?	NR	2E-10				NR [NR]	N
800	chr6	28296649	28296650	rs853681	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	6p22.1		rs853681-?	NR	1E-10				NR [NR]	N
800	chr6	28296862	28296863	rs853679	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	6p22.1		rs853679-?	NR	1E-10				NR [NR]	N
800	chr6	28296862	28296863	rs853679	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Depression	105,739 European ancestry individuals, 16,471 European ancestry major depressive disorder cases, 58,835 European ancestry controls	368,890 European ancestry individuals	6p22.1	NR	rs853679-A	NR	1E-7		5.298256	[NR] z score decrease	Affymetrix [up to 6544862] (imputed)	N
800	chr6	28299087	28299088	rs35814746	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	6p22.1	ZNF323, ZSCAN31	rs35814746-?	NR	4E-16		0.036	[0.028-0.044] unit decrease	Affymetrix [5701386] (imputed)	N
800	chr6	28299686	28299687	rs853676	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	6p22.1		rs853676-?	NR	7E-11				NR [NR]	N
800	chr6	28301098	28301099	rs7752448	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	6p22.1		rs7752448-?	NR	2E-9				NR [NR]	N
800	chr6	28301098	28301099	rs7752448	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gastroesophageal reflux disease	32,957 European ancestry cases, 434,296 European ancestry controls, 948 East Asian ancestry cases, 177,516 East Asian ancestry controls	NA	6p22.1		rs7752448-G	NR	6E-9		0.0771	[0.051-0.103] unit decrease	Affymetrix, Illumina [25843127] (imputed)	N
800	chr6	28301098	28301099	rs7752448	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fish- and plant-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	6p22.1	LRRC16A, SCGN, SLC17A4, SLC17A1, SLC17A3, SLC17A2, TRIM38, HIST1H1A, HIST1H3A, HIST1H4A, HIST1H4B, HIST1H3B, HIST1H2AB, HIST1H2BB, HIST1H3C, HIST1H1C, HFE, HIST1H4C, HIST1H1T, HIST1H2BC, HIST1H2AC, HIST1H2BD, HIST1H2BE, HIST1H4D, HIST1H3D, HIST1H2AD, HIST1H2BF, HIST1H4E, HIST1H3G, HIST1H2BI, BTN3A2, BTN2A2, BTN3A1, BTN3A3, BTN2A1, BTN1A1, HMGN4, ABT1, ZNF322, HIST1H2BJ, HIST1H2AG, HIST1H2BK, HIST1H4I, HIST1H2AH, PRSS16, POM121L2, ZNF391, ZNF184, HIST1H2BL, HIST1H2AI, HIST1H3H, HIST1H2AJ, HIST1H2BM, HIST1H4J, HIST1H4K, HIST1H2AK, HIST1H2BN, HIST1H2AL, HIST1H1B, HIST1H3I, HIST1H4L, HIST1H3J, HIST1H2AM, HIST1H2BO, OR2B2, OR2B6, ZNF165, ZSCAN16, ZKSCAN8, ZSCAN9, ZKSCAN4, NKAPL, PGBD1, ZSCAN31, ZKSCAN3, ZSCAN12, ZSCAN23, GPX6, SCAND3, TRIM27, C6orf100, ZNF311, OR2W1, OR2B3, OR2J1, OR2J3, OR2J2, OR14J1, OR5V1, OR12D3, OR12D2, OR11A1, OR10C1, OR2H1, MAS1L, UBD, GABBR1, OR2H2	rs7752448-?	NR	2E-10		0.0230183	[0.016-0.03] unit increase	Affymetrix [25921788] (imputed)	N
800	chr6	28301098	28301099	rs7752448	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	6p22.1	ZSCAN31	rs7752448-A	0.881	7E-15		0.0403	[0.03-0.05] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
800	chr6	28301098	28301099	rs7752448	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	6p22.1	NR	rs7752448-A	0.1038	5E-7	(women)	0.039	[0.024-0.054] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
800	chr6	28301098	28301099	rs7752448	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	6p22.1	ZNF184	rs7752448-A	0.8746	1E-48		0.0553	[0.048-0.063] unit increase	Affymetrix [19819130] (imputed)	N
800	chr6	28301098	28301099	rs7752448	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	6p22.1	ZNF184	rs7752448-A	0.8746	1E-22		0.0346	[0.028-0.041] unit increase	Affymetrix [19819130] (imputed)	N
800	chr6	28301098	28301099	rs7752448	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	6p22.1	ZNF184	rs7752448-A	0.8746	7E-16		0.0288	[0.022-0.036] unit increase	Affymetrix [19819130] (imputed)	N
800	chr6	28301098	28301099	rs7752448	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	6p22.1	ZNF184	rs7752448-A	0.8746	3E-35		0.0435	[0.037-0.05] unit increase	Affymetrix [19819130] (imputed)	N
800	chr6	28304383	28304384	rs67340775	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in ever smokers	23,223 European ancestry cases,  16,964 European ancestry controls	NA	6p22.1	ZSCAN31	rs67340775-C	0.079332947	7E-10		1.1820452	[1.120847747-1.246584078]	Illumina [10439017] (imputed)	N
800	chr6	28304568	28304569	rs9295769	31272903	Sunadome H	2019-07-01	Allergol Int	Correlation between eosinophil count, its genetic background and body mass index: The Nagahama Study.	Eosinophil counts	4,650 East Asian ancestry individuals	NA	6p22.1	NR	rs9295769-G	0.1	2E-7		0.1799	NR unit increase	Illumina [103680] (imputed)	N
800	chr6	28304568	28304569	rs9295769	31272903	Sunadome H	2019-07-01	Allergol Int	Correlation between eosinophil count, its genetic background and body mass index: The Nagahama Study.	Eosinophil counts	4,206 East Asian ancestry individuals	NA	6p22.1	NR	rs9295769-G	0.1	4E-9		0.2121	NR unit increase	Illumina [103680] (imputed)	N
800	chr6	28306670	28306671	rs13217619	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	6p22.1	ZSCAN31, ZKSCAN3	rs13217619-?		1E-27				NR [6786993] (imputed)	N
800	chr6	28306670	28306671	rs13217619	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	6p22.1	NR	rs13217619-T	NR	2E-29		1.25	[NR]	Illumina [7158791] (imputed)	N
801	chr6	28314879	28314880	rs35016036	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Pork consumption	335,576 European ancestry individuals	NA	6p22.1	LRRC16A, SCGN, SLC17A4	rs35016036-?	NR	2E-12		0.00403024	[-0.00345-0.01151] unit decrease	Affymetrix [25921788] (imputed)	N
801	chr6	28314879	28314880	rs35016036	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Oily fish consumption	335,576 European ancestry individuals	NA	6p22.1	LRRC16A, SCGN, SLC17A4, SLC17A1	rs35016036-?	NR	2E-12		0.0267988	[0.019-0.034] unit increase	Affymetrix [25921788] (imputed)	N
801	chr6	28314879	28314880	rs35016036	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	6p22.1	NR	rs35016036-T	0.101417467242015	8E-9		0.020720981	[0.014-0.028] unit decrease	NR [NR]	N
801	chr6	28318330	28318331	rs35744819	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	6p22.1	NR	rs35744819-T	0.07	1E-12		1.22	[1.16-1.28]	Illumina [8468885] (imputed)	N
801	chr6	28322295	28322296	rs6903823	21946350	Soler Artigas M	2011-09-25	Nat Genet	Genome-wide association and large-scale follow up identifies 16 new loci influencing lung function.	Pulmonary function	48,201 European ancestry individuals	46,411 European ancestry individuals	6p22.1	ZKSCAN3, ZNF323	rs6903823-G	0.21	2E-10	(FEV1)	0.037	[0.025-0.049] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
801	chr6	28323701	28323702	rs13198809	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	6p22.1		rs13198809-?	NR	3E-8				NR [NR]	N
801	chr6	28323937	28323938	rs213237	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs213237-?		2E-6		1.03	[1.02-1.05]	Illumina [7645193] (imputed)	N
801	chr6	28323937	28323938	rs213237	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs213237-?		7E-7		1.36	[1.21-1.54]	Illumina [7645193] (imputed)	N
801	chr6	28324377	28324378	rs35353359	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	6p22.1		rs35353359-?	NR	2E-8				NR [NR]	N
801	chr6	28325200	28325201	rs6921919	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p22.1	GPX5, GPX6, NKAPL, OR2B6, PGBD1, TOB2P1, ZBED9, ZKSCAN3, ZKSCAN4, ZKSCAN8, ZNF165, ZNF192P1, ZSCAN12, ZSCAN12P1, ZSCAN16, ZSCAN16-AS1, ZSCAN23, ZSCAN26, ZSCAN31, ZSCAN9	rs6921919-C		1E-19		1.12	[1.09-1.14]	Affymetrix, Illumina [NR]	N
801	chr6	28326294	28326303	rs142808087	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs142808087-?		3E-8	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
801	chr6	28326534	28326535	rs144931476	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p22.1	ZKSCAN3	rs144931476-A	NR	4E-10		0.038083	[0.026-0.05] unit decrease	Affymetrix [323123] (imputed)	N
801	chr6	28332140	28332141	rs13214023	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	6p22.1		rs13214023-?	NR	2E-8				NR [NR]	N
801	chr6	28332140	28332141	rs13214023	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p22.1	NR	rs13214023-A	0.0929	1E-9	(EA)	0.071	[0.048-0.094] unit decrease	Illumina [~ 11800000] (imputed)	N
801	chr6	28339477	28339478	rs116537337	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	6p22.1	NR	rs116537337-G	0.0418089307886166	5E-14		0.02280557	[0.017-0.029] unit increase	NR [NR]	N
801	chr6	28339477	28339478	rs116537337	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	6p22.1	NR	rs116537337-G	0.0418089307886166	2E-13		0.029144192	[0.021-0.037] unit increase	NR [NR]	N
801	chr6	28339477	28339478	rs116537337	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	6p22.1	NR	rs116537337-G	0.0418089307886166	5E-14		0.019120675	[0.014-0.024] unit increase	NR [NR]	N
801	chr6	28339477	28339478	rs116537337	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p22.1	NR	rs116537337-?	NR	7E-8		0.1564	[0.1-0.21] unit increase	Illumina [at least 560000] (imputed)	N
801	chr6	28344730	28344731	rs142180737	30846698	Dashti HS	2019-03-07	Nat Commun	Genome-wide association study identifies genetic loci for self-reported habitual sleep duration supported by accelerometer-derived estimates.	Sleep duration (short sleep)	106,192  European ancestry cases, 305,742 European ancestry controls	47,180  adults, 10,554 children or adolescents	6p22.1	ZSCAN12, ZSCAN31, ZKSCAN3	rs142180737-C	NR	4E-9		1.167		NR [14661600] (imputed)	N
801	chr6	28345281	28345282	rs35017208	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	6p22.1		rs35017208-?	NR	2E-8				NR [NR]	N
801	chr6	28345281	28345282	rs35017208	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p22.1	NR	rs35017208-T	0.1109	1E-12		0.0133	[0.0096-0.017] unit decrease	NR [7666894] (imputed)	N
801	chr6	28346944	28346945	rs7754960	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Myopia (age of diagnosis)	104,293 European ancestry individuals	NA	6p22.1	NR	rs7754960-C	0.2451	4E-12		0.0559	[0.04-0.072] unit decrease	Illumina [~ 10600000] (imputed)	N
801	chr6	28349697	28349698	rs13213152	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	6p22.1		rs13213152-?	NR	2E-8				NR [NR]	N
801	chr6	28349697	28349698	rs13213152	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	6p22.1	NR	rs13213152-G	0.101841204764392	6E-21		0.014247036	[0.011-0.017] unit decrease	NR [NR]	N
801	chr6	28349697	28349698	rs13213152	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	6p22.1	NR	rs13213152-G	0.101841204764392	7E-21		0.018414358	[0.015-0.022] unit decrease	NR [NR]	N
801	chr6	28349697	28349698	rs13213152	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p22.1	ZKSCAN3, ZSCAN12	rs13213152-G	0.212	5E-18				Illumina [118177]	N
801	chr6	28354834	28354835	rs67981811	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	6p22.1		rs67981811-?	NR	5E-22		0.0465	unit increase	NR [NR]	N
801	chr6	28354834	28354835	rs67981811	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Neuropsychiatric disorders	19,099 European ancestry attention deficit hyperactivity disorder cases, 18,381 European ancestry autism spectrum disorder cases, 20,352 European ancestry bipolar disorder cases, 170,756 European ancestry major depressive disorder cases, 33,640 European ancestry schizophrenia cases, 466,420 European ancestry controls	NA	6p22.1	NR	rs67981811-C	NR	5E-19		8.907	NR z score increase	NR [NR]	N
801	chr6	28355151	28355152	rs181122333	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p22.1	NR	rs181122333-?	NR	2E-6		0.228	[0.13-0.32] unit decrease	Illumina [at least 560000] (imputed)	N
801	chr6	28357806	28357807	rs36092177	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	6p22.1		rs36092177-?	NR	2E-8				NR [NR]	N
801	chr6	28358008	28358009	rs13213986	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Squamous cell lung carcinoma	7,426 European ancestry cases, 55,627 European ancestry controls	NA	6p22.1	ZSCAN12	rs13213986-A	0.076648757	7E-11		1.2491379	[1.168376851-1.335481193]	Illumina [10439017] (imputed)	N
801	chr6	28359631	28359632	rs2232429	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	6p22.1		rs2232429-?	NR	2E-8				NR [NR]	N
801	chr6	28362308	28362309	rs34546986	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	6p22.1		rs34546986-?	NR	2E-8				NR [NR]	N
801	chr6	28364026	28364027	rs78680299	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	6p22.1		rs78680299-C	0.087728	1E-8		0.0359376	[0.024-0.048] unit increase	Illumina [13476299] (imputed)	N
801	chr6	28364231	28364232	rs34871267	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	6p22.1		rs34871267-?	NR	2E-8				NR [NR]	N
801	chr6	28366150	28366151	rs2232423	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	6p22.1		rs2232423-?	NR	2E-8				NR [NR]	N
801	chr6	28366150	28366151	rs2232423	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder	16,823 European ancestry cases, 25,632 European ancestry controls	NA	6p22.1		rs2232423-?	NR	8E-9		1.07961	[1.05-1.11]	NR [NR]	N
801	chr6	28366150	28366151	rs2232423	33909500	Moll M	2021-04-28	Am J Physiol Lung Cell Mol Physiol	A Systematic Analysis of Protein-altering Exonic Variants in Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease	up to 31,465 European ancestry cases, up to 203,688 European ancestry controls, up to 1,413 African ancestry cases, up to 6,080 African ancestry controls, up to 287 East Asian ancestry cases, up to 7,484 East Asian ancestry controls, up to 61 Hispanic cases, up to 613 Hispanic controls	NA	6p22.1	ZSCAN12	rs2232423-G	0.11	2E-11		1.11	[1.08 -1.15]	Illumina [at least 109036]	N
801	chr6	28366150	28366151	rs2232423	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Major depressive disorder (MTAG)	at least 170,756 European ancestry cases, at least 329,443 European ancestry controls	NA	6p22.1	NR	rs2232423-A	0.8944	2E-22		0.06450851	[0.052-0.078] unit increase	NR [NR]	N
801	chr6	28366150	28366151	rs2232423	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking initiation (ever regular vs never regular)	up to 433,216 European ancestry individuals	NA	6p22.1	ZSCAN12	rs2232423-G	0.111	1E-8		0.0194	[0.013-0.026] unit decrease	Illumina [~ 250000] (imputed)	N
801	chr6	28366150	28366151	rs2232423	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking initiation (ever regular vs never regular)	up to 433,216 European ancestry individuals	NA	6p22.1	ZSCAN12	rs2232423-G	0.11	1E-8		0.019	[0.012-0.026] unit decrease	Illumina [~ 250000] (imputed)	N
801	chr6	28382493	28382494	rs7451726	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6p22.1		rs7451726-A	0.7947	3E-10		0.0109	[0.0076-0.0142] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
801	chr6	28394679	28394680	rs13201681	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	6p22.1		rs13201681-?	NR	2E-8				NR [NR]	N
801	chr6	28394679	28394680	rs13201681	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	6p22.1	ZSCAN12, ZSCAN23	rs13201681-T	0.078084678	7E-12		1.1571598	[1.109918136-1.206412233]	Illumina [10439017] (imputed)	N
801	chr6	28400537	28400538	rs7766356	31268507	Periyasamy S	2019-07-03	JAMA Psychiatry	Association of Schizophrenia Risk With Disordered Niacin Metabolism in an Indian Genome-wide Association Study.	Schizophrenia	816 Indian ancestry cases, 900 Indian ancestry controls, 505 Indian ancestry cases and 871 Indian ancestry controls from 405 families, up to 36,989 European and unknown ancestry cases, up to 113,075 European and unknown ancestry controls	NA	6p22.1	NR	rs7766356-?	NR	3E-21				Illumina [up to 5582932] (imputed)	N
801	chr6	28400537	28400538	rs7766356	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	NR	rs7766356-?	NR	7E-6		4.5	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
801	chr6	28410142	28410143	rs77285596	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p22.1	NR	rs77285596-T	0.917	2E-19		1.362	[1.3-1.43]	Illumina [11270530] (imputed)	N
801	chr6	28411940	28411941	rs67381177	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	6p22.1	NR	rs67381177-G	0.0685885	2E-17		0.10597924	[0.081-0.13] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
801	chr6	28411940	28411941	rs67381177	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in ever smokers	23,223 European ancestry cases,  16,964 European ancestry controls	NA	6p22.1	ZSCAN23	rs67381177-C	0.07893365	2E-9		1.1776505	[1.116557606-1.242086049]	Illumina [10439017] (imputed)	N
801	chr6	28414369	28414370	rs753075559	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	Composite immunoglobulin trait (IgA/IgM)	14,183 Icelandic ancestry individuals	2,146 Swedish ancestry individuals	6p22.1	ZSCAN23	rs753075559-C	0.0039	1E-7	(Icelandic)	0.54	NR SD units decrease	Illumina [21568490] (imputed)	N
801	chr6	28414966	28414967	rs16894116	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	6p22.1	ZSCAN23	rs16894116-T	0.2376	1E-8		0.01732301	[0.011-0.023] unit decrease	Affymetrix [~ 11515000] (imputed)	N
801	chr6	28414966	28414967	rs16894116	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	6p22.1	COX11P1	rs16894116-G	NR	3E-21	(EA)	1.141	[1.11-1.17]	Illumina [6627481] (imputed)	N
801	chr6	28418038	28418039	rs2859368	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Schizophrenia (MTAG)	940,613 European ancestry individuals	NA			rs2859368-?	NR	6E-13				NR [2625067]	N
801	chr6	28419903	28419905	rs34841551	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs34841551-?		1E-8	(Posterior corona radiata )			NR [8955960] (imputed)	N
801	chr6	28420248	28420249	rs34124863	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p22.1	NR	rs34124863-T	0.0678573	6E-344				Affymetrix, Illumina [24246363] (imputed)	N
801	chr6	28423598	28423599	rs7766749	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	6p22.1	NR	rs7766749-C	0.0954537828586696	4E-9		0.012985015	[0.0087-0.0173] unit increase	NR [NR]	N
801	chr6	28426243	28426244	rs114708114	33204752	Butler-Laporte G	2020-09-24	Open Forum Infect Dis	Genetic Determinants of Antibody-Mediated Immune Responses to Infectious Diseases Agents: A Genome-Wide and HLA Association Study.	Merkel cell polyomavirus VP1 antibody levels	5,915 White British ancestry individuals	NA	6p22.1	OR2E1P	rs114708114-C	0.98	2E-8		0.37	[0.24-0.50] unit increase	NR [25472218] (imputed)	N
801	chr6	28435493	28435494	rs77011267	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs77011267-?		1E-6		1.79	[1.41-2.26]	Illumina [7645193] (imputed)	N
801	chr6	28436014	28436021	rs138024639	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p22.1	NR	rs138024639-T	0.0932	3E-9	(EA)	0.0699	[0.047-0.093] unit decrease	Illumina [~ 11800000] (imputed)	N
801	chr6	28436144	28436145	rs55690788	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	6p22.1	NR	rs55690788-C	0.07	3E-12		1.22	[1.16-1.28]	Illumina [8468885] (imputed)	N
801	chr6	28442329	28442330	rs116628042	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	6p22.1	NR	rs116628042-?	NR	6E-6		0.0075805	[0.0043-0.0109] unit increase	Affymetrix [805426] (imputed)	N
802	chr6	28449379	28449380	rs34979126	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	6p22.1	GPX6	rs34979126-A	0.0717	6E-13		0.0175	[0.012-0.023] unit decrease	Affymetrix, Illumina [33811881] (imputed)	N
802	chr6	28457526	28457527	rs55938905	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	GPX6	rs55938905-C	NR	3E-8		0.040693	[0.026-0.055] unit decrease	Affymetrix [321016] (imputed)	N
802	chr6	28467069	28467070	rs146362527	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs146362527-?		7E-6		1.06	[1.03-1.09]	Illumina [7645193] (imputed)	N
802	chr6	28474217	28474218	rs974334	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	GPX6	rs974334-G	NR	2E-12		0.0268207	[0.019-0.034] unit decrease	Affymetrix [321016] (imputed)	N
802	chr6	28480022	28480023	rs34668037	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6p22.1	GPX6	rs34668037-A	NR	2E-8		0.0282879	[0.019-0.038] unit increase	Affymetrix [321114] (imputed)	N
802	chr6	28480634	28480635	rs6456822	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	Epithelial ovarian cancer	16,924 European ancestry cases, 68,502 European ancestry controls	NA	6p22.1	NR	rs6456822-T	0.690887	1E-6		1.0714362	[1.04202715140265-1.10167527662683]	Illumina [11595112] (imputed)	N
802	chr6	28482916	28482917	rs13191038	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in HDL	115,082 European ancestry individuals	NA	6p22.1		rs13191038-T	0.886309	5E-8		0.0317288	[0.02-0.043] unit increase	NR [11722792] (imputed)	N
802	chr6	28482916	28482917	rs13191038	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p22.1	NR	rs13191038-C	0.1101	4E-12		0.0131	[0.0094-0.0168] unit decrease	NR [7666894] (imputed)	N
802	chr6	28482916	28482917	rs13191038	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA	6p22.1	NR	rs13191038-?	NR	5E-6		0.058	[0.033-0.083] unit increase	Illumina [at least 560000] (imputed)	N
802	chr6	28486674	28486674	rs71548342	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	6p22.1	NR	rs71548342-GCA	0.1743	3E-12		0.002227	[0.0016-0.0029] unit decrease	Affymetrix [NR] (imputed)	N
802	chr6	28486708	28486708	rs34713341	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	6p22.1		rs34713341-GCA	NR	4E-8		0.0191	[0.012-0.026] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
802	chr6	28488099	28488100	rs149129224	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p22.1	NR	rs149129224-?	NR	1E-6		0.2331	[0.14-0.33] unit decrease	Illumina [at least 560000] (imputed)	N
802	chr6	28493695	28493696	rs4624865	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p22.1	GPX6, GPX5	rs4624865-C	0.02	5E-6	(EA)	3.56	[1.99-6.36]	Illumina [up to 547389]	N
802	chr6	28502549	28502550	rs451774	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	6p22.1		rs451774-?	NR	5E-8				Affymetrix [NR] (imputed)	N
802	chr6	28534832	28534833	rs139582054	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p22.1	NR	rs139582054-?	NR	1E-8		0.167	[0.11-0.22] unit increase	Illumina [at least 560000] (imputed)	N
802	chr6	28548673	28548674	rs146918648	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Depression	at least 5,919 European ancestry cases, at least 130,691 European ancestry controls	634,037 European ancestry cases, 1,308,690 European ancestry controls	6p22.1	SCAND3	rs146918648-G	0.02684	2E-12		0.04114411	[0.028-0.054] unit decrease	NR [9417325] (imputed)	N
802	chr6	28548673	28548674	rs146918648	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling miserable	376,097 European ancestry individuals	NA	6p22.1	NR	rs146918648-A	0.042114	2E-8		5.65	z score increase	NR [10847151] (imputed)	N
802	chr6	28557148	28557149	rs114416898	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	6p22.1	NR	rs114416898-?	NR	6E-6		0.0076225	[0.0043-0.0109] unit increase	Affymetrix [805426] (imputed)	N
802	chr6	28559246	28559247	rs392471	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	SCAND3, RP5-1186N24.3	rs392471-C	NR	2E-12		0.0385326	[0.028-0.049] unit decrease	Affymetrix [321016] (imputed)	N
802	chr6	28561226	28561227	rs144478515	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	67,764 individuals	NA	6p22.1	NR	rs144478515-?		7E-9				NR [8377093]	N
802	chr6	28561226	28561227	rs144478515	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	65,967 individuals	NA	6p22.1	NR	rs144478515-?		7E-9				NR [8377093]	N
802	chr6	28562247	28562248	rs34119086	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p22.1	NR	rs34119086-T	0.093	8E-9	(EA)	0.0679	[0.045-0.091] unit decrease	Illumina [~ 11800000] (imputed)	N
802	chr6	28573005	28573006	rs442439	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p22.1	ZBED9	rs442439-A		1E-17		0.02	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
803	chr6	28576142	28576143	rs4947336	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphoglycerides levels	115,006 European ancestry individuals	NA	6p22.1		rs4947336-T	0.884789	4E-8		0.0336006	[0.022-0.046] unit increase	NR [11722792] (imputed)	N
803	chr6	28576142	28576143	rs4947336	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein A1 levels	115,082 European ancestry individuals	NA	6p22.1		rs4947336-T	0.884785	7E-9		0.0342005	[0.023-0.046] unit increase	NR [11722792] (imputed)	N
803	chr6	28578285	28578286	rs34388845	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	6p22.1		rs34388845-G	0.21	9E-16				NR [NR] (imputed)	N
803	chr6	28578285	28578286	rs34388845	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	High density lipoprotein cholesterol levels	392,965 European ancestry individuals	NA	6p22.1		rs34388845-G	0.21	2E-14		0.017	mmol/L decrease	NR [NR] (imputed)	N
803	chr6	28578285	28578286	rs34388845	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	6p22.1		rs34388845-G	0.21	3E-12		0.013	% increase	NR [NR] (imputed)	N
803	chr6	28578285	28578286	rs34388845	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Aspartate aminotransferase levels	424,778 European ancestry individuals	NA	6p22.1		rs34388845-G	0.21	2E-28		0.028	U/L decrease	NR [NR] (imputed)	N
803	chr6	28578285	28578286	rs34388845	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		6p22.1	SCAND3	rs34388845-A	0.786103	2E-13		0.0122774	[0.009-0.0155] unit decrease	Affymetrix [12370749]	N
803	chr6	28578285	28578286	rs34388845	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Sleep duration	384,317 European ancestry individuals	NA	6p22.1		rs34388845-G	0.2136	5E-10		0.01851	[0.013-0.024] unit decrease	Affymetrix, Illumina [10862567] (imputed)	N
803	chr6	28584774	28584775	rs34556183	30846698	Dashti HS	2019-03-07	Nat Commun	Genome-wide association study identifies genetic loci for self-reported habitual sleep duration supported by accelerometer-derived estimates.	Sleep duration	446,118 European ancestry individuals	47,180  adults, 10,554 children or adolescents	6p22.1	NR	rs34556183-A	NR	2E-11		0.99	unit increase	Affymetrix [14661600] (imputed)	N
803	chr6	28594199	28594200	rs9766115	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs9766115-?		1E-8	(Posterior corona radiata )			NR [8955960] (imputed)	N
803	chr6	28607583	28607584	rs138803712	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs138803712-?		8E-6		1.06	[1.03-1.09]	Illumina [7645193] (imputed)	N
803	chr6	28607583	28607584	rs138803712	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs138803712-?		2E-6		1.82	[1.43-2.33]	Illumina [7645193] (imputed)	N
803	chr6	28619352	28619353	rs34724414	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium HDL	115,082 European ancestry individuals	NA	6p22.1		rs34724414-A	0.884653	3E-11		0.0400274	[0.028-0.052] unit increase	NR [11722792] (imputed)	N
803	chr6	28619352	28619353	rs34724414	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium HDL particles	115,082 European ancestry individuals	NA	6p22.1		rs34724414-A	0.884653	1E-9		0.0360246	[0.024-0.048] unit increase	NR [11722792] (imputed)	N
803	chr6	28622741	28622742	rs567880264	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in HDL	115,082 European ancestry individuals	NA	6p22.1		rs567880264-C	0.776342	2E-9		0.0308977	[0.021-0.041] unit increase	NR [11722792] (imputed)	N
803	chr6	28622741	28622742	rs567880264	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-3 fatty acid levels	115,006 European ancestry individuals	NA	6p22.1		rs567880264-C	0.776356	2E-8		0.0308647	[0.02-0.042] unit increase	NR [11722792] (imputed)	N
803	chr6	28622741	28622742	rs567880264	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	6p22.1		rs567880264-C	0.776342	3E-8		0.028853	[0.019-0.039] unit increase	NR [11722792] (imputed)	N
803	chr6	28622741	28622742	rs567880264	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	6p22.1		rs567880264-C	0.776342	5E-8		0.0285476	[0.018-0.039] unit increase	NR [11722792] (imputed)	N
803	chr6	28626100	28626101	rs114179634	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Liver iron content	32,858 European ancestry individuals	NA	6p22.1	ZBED9	rs114179634-?	NR	1E-89	(conditional)	0.29	NR mg/g increase	Affymetrix [9390170] (imputed)	N
803	chr6	28626100	28626101	rs114179634	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	6p22.1		rs114179634-C	0.911	2E-146		0.51	[-0.55--0.47] % decrease	Affymetrix [NR] (imputed)	N
803	chr6	28630690	28630691	rs13194504	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p22.1	NR	rs13194504-A	0.1122	1E-11		0.0127	[0.009-0.0164] unit decrease	NR [7666894] (imputed)	N
803	chr6	28630792	28630793	rs7767008	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6p22.1	LINC00533	rs7767008-G	NR	4E-8		0.0185844	[0.012-0.025] unit decrease	Affymetrix [321114] (imputed)	N
803	chr6	28638727	28638728	rs57794423	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p22.1	NR	rs57794423-C	0.01045	2E-8	(TNC)	0.08809	NR unit increase	Illumina [1671387] (imputed)	N
803	chr6	28638727	28638728	rs57794423	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p22.1	NR	rs57794423-C	0.01045	2E-11	(COL18A1)	0.1135	NR unit increase	Illumina [1671387] (imputed)	N
803	chr6	28655339	28655340	rs11966949	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p22.1	NR	rs11966949-?	NR	9E-6		0.3016	[0.17-0.44] unit increase	Illumina [at least 560000] (imputed)	N
803	chr6	28669314	28669315	rs6939576	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6p22.1	NR	rs6939576-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
803	chr6	28669426	28669427	rs6939297	28078323	Raj T	2016-12-21	Neurol Genet	Genetic architecture of age-related cognitive decline in African Americans.	Cognitive decline (age-related)	3,964 African American ancestry individuals.	NA	6p22.1	SCAND3, RPSAP2	rs6939297--?		5E-6		0.009	unit decrease	Illumina [13900000] (imputed)	N
803	chr6	28671342	28671343	rs6908726	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small HDL	115,082 European ancestry individuals	NA	6p22.1		rs6908726-G	0.123912	6E-9		0.0360822	[0.024-0.048] unit decrease	NR [11722792] (imputed)	N
803	chr6	28671342	28671343	rs6908726	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	6p22.1	ZBED9	rs6908726-C	0.8747	2E-13		0.026150687	[0.019-0.033] unit increase	Affymetrix [11515109] (imputed)	N
803	chr6	28671984	28671984	rs139089584	31577861	Dai J	2019-10-31	Int J Cancer	Genome-wide association study of INDELs identified four novel susceptibility loci associated with lung cancer risk.	Lung cancer	20,871 European ancestry cases, 15,971 European ancestry controls, 2,331 Chinese ancestry cases, 3,077 Chinese ancestry controls	NA	6p22.1	LINC00533	rs139089584-TTTG	0.29	2E-7		0.92	[0.89-0.95]	Illumina [484196]	N
803	chr6	28676192	28676193	rs9368570	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	RPSAP2	rs9368570-A	NR	2E-16		0.0261372	[0.02-0.032] unit decrease	Affymetrix [321016] (imputed)	N
803	chr6	28677043	28677045	rs780222578	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6p22.1		rs780222578-C	0.155998	4E-9		0.0339542	[0.023-0.045] unit increase	NR [11722792] (imputed)	N
803	chr6	28677043	28677045	rs780222578	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6p22.1		rs780222578-C	0.155998	3E-8		0.0311183	[0.02-0.042] unit increase	NR [11722792] (imputed)	N
803	chr6	28677043	28677045	rs780222578	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6p22.1	RPSAP2	rs780222578-C	NR	4E-11		0.0287139	[0.02-0.037] unit decrease	Affymetrix [321114] (imputed)	N
803	chr6	28677043	28677045	rs780222578	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p22.1	RPSAP2	rs780222578-C	NR	3E-11		0.0289999	[0.02-0.038] unit decrease	Affymetrix [323858] (imputed)	N
803	chr6	28678356	28678357	rs7775835	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6p22.1		rs7775835-T	0.142781	3E-8		0.0324682	[0.021-0.044] unit increase	NR [11722792] (imputed)	N
803	chr6	28678356	28678357	rs7775835	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6p22.1		rs7775835-T	0.142781	5E-8		0.0321912	[0.021-0.044] unit decrease	NR [11722792] (imputed)	N
803	chr6	28678356	28678357	rs7775835	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Verbal-numerical reasoning	171,304 British ancestry individuals	NA	6p22.1		rs7775835-?	NR	2E-17				NR [7857346] (imputed)	N
803	chr6	28678356	28678357	rs7775835	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depression	688,809 European ancestry individuals	NA	6p22.1	NR	rs7775835-T	NR	2E-8		5.588	z score decrease	Affymetrix [10847151] (imputed)	N
803	chr6	28678356	28678357	rs7775835	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	RPSAP2	rs7775835-T	NR	9E-12		6.824	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
803	chr6	28680775	28680776	rs185053056	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	67,764 individuals	NA	6p22.1	NR	rs185053056-?		1E-13				NR [8377093]	N
803	chr6	28680775	28680776	rs185053056	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	65,967 individuals	NA	6p22.1	NR	rs185053056-?		1E-13				NR [8377093]	N
803	chr6	28680834	28680835	rs190340765	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Strep throat	52,487 European ancestry cases, 22,017 European ancestry controls	NA	6p22.1	NR	rs190340765-?	NR	2E-6		0.0695	[0.041-0.098] unit decrease	Illumina [at least 560000] (imputed)	N
803	chr6	28682405	28682406	rs145097508	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	6p22.1	NR	rs145097508-?	NR	2E-9		0.03206	[0.022-0.043] unit increase	Affymetrix [10847151] (imputed)	N
803	chr6	28682724	28682725	rs9393926	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	6p22.1	SCAND3	rs9393926-G	0.122701	9E-25		0.0306832	[0.025-0.037] unit decrease	Affymetrix [NR] (imputed)	N
803	chr6	28689671	28689672	rs9468413	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	RPSAP2	rs9468413-C	NR	4E-8		0.0222235	[0.014-0.03] unit decrease	Affymetrix [127266] (imputed)	N
803	chr6	28693025	28693026	rs115592443	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	RPSAP2	rs115592443-T	NR	6E-9		0.0289543	[0.019-0.039] unit decrease	Affymetrix [321016] (imputed)	N
803	chr6	28696771	28696772	rs150814685	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma and major depressive disorder	46,802 European ancestry asthma cases, 59,851 European ancestry major depressive disorder cases, 460,635 European ancestry controls	NA	6p22.1	C6orf100, GPX5, GPX6, HCG14, LOC401242, NKAPL, OR2B3, OR2J2, OR2J3, OR2W1, TRIM27, ZBED9, ZKSCAN3, ZKSCAN4, ZNF311, ZSCAN12, ZSCAN23, ZSCAN26, ZSCAN31, LOC100129636, PGBD1	rs150814685-?	NR	2E-11				Affymetrix [up to 13554551] (imputed)	N
803	chr6	28697963	28697964	rs16894234	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6p22.1	NR	rs16894234-?	NR	3E-12				Affymetrix [~ 8270000] (imputed)	N
804	chr6	28712246	28712247	rs1233578	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	RPSAP2	rs1233578-G	NR	2E-8		0.0228089	[0.015-0.031] unit decrease	Affymetrix [323858] (imputed)	N
804	chr6	28712246	28712247	rs1233578	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p22.1	NR	rs1233578-G	0.18	4E-9		1.13	[1.08-1.18]	Affymetrix [9886854] (imputed)	N
804	chr6	28712246	28712247	rs1233578	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p22.1	NR	rs1233578-G	0.18	4E-14			[NR]	Affymetrix [9886854] (imputed)	N
804	chr6	28712246	28712247	rs1233578	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p22.1	NR	rs1233578-G	0.18	2E-11		1.11	[1.08-1.14]	Affymetrix [9886854] (imputed)	N
804	chr6	28712246	28712247	rs1233578	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p22.1	NR	rs1233578-G	0.18	8E-14			[NR]	Affymetrix [9886854] (imputed)	N
804	chr6	28712246	28712247	rs1233578	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in non-current smokers	16,488 European ancestry cases, 169,688 European ancestry controls	NA	6p22.1	NR	rs1233578-G	0.18	2E-11		1.11	[1.08-1.14]	Affymetrix [9886854] (imputed)	N
804	chr6	28712246	28712247	rs1233578	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in never smokers	8,631 European ancestry cases, 120,544 European ancestry controls	NA	6p22.1	NR	rs1233578-G	0.18	3E-9		1.13	[1.09-1.18]	Affymetrix [9886854] (imputed)	N
804	chr6	28712246	28712247	rs1233578	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in ever smokers	12,446 European ancestry cases, 59,145 European ancestry controls	NA	6p22.1	NR	rs1233578-G	0.18	3E-7		1.1	[1.06-1.15]	Affymetrix [9886854] (imputed)	N
804	chr6	28712246	28712247	rs1233578	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	6p22.1	TRIM27	rs1233578-G	0.18	2E-17				NR [> 9500000] (imputed)	N
804	chr6	28712246	28712247	rs1233578	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	6p22.1	TRIM27	rs1233578-G	0.17936300000000005	4E-12		1.0560242	[1.03991341766738-1.07238465256811]	NR [9572556] (imputed)	N
804	chr6	28712246	28712247	rs1233578	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	6p22.1	NR	rs1233578-A	NR	1E-9		6.098	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
804	chr6	28712246	28712247	rs1233578	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	RPSAP2	rs1233578-A	NR	5E-12		6.899	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
804	chr6	28712246	28712247	rs1233578	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls, 2,149 African ancestry cases, 6,055 African ancestry controls, 1,239 Japanese ancestry cases, 3,976 Japanese ancestry controls, 606 Latino cases, 792 Latino controls	NA	6p22.1	GPX5, TRIM27	rs1233578-G	0.13	6E-7		1.09	[1.05-1.12]	Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
804	chr6	28712246	28712247	rs1233578	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls	NA	6p22.1	GPX5, TRIM27	rs1233578-G	0.13	5E-9		0.1	[0.061-0.139] unit increase	Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
804	chr6	28713950	28713952	rs372002372	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs372002372-?		2E-10	(Posterior corona radiata )			NR [8955960] (imputed)	N
804	chr6	28713950	28713952	rs372002372	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs372002372-?		1E-11	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
804	chr6	28713950	28713952	rs372002372	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs372002372-?		1E-11	(Superior corona radiata)			NR [8955960] (imputed)	N
804	chr6	28713950	28713952	rs372002372	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs372002372-?		5E-8	(Average across all tracts)			NR [8955960] (imputed)	N
804	chr6	28713950	28713952	rs372002372	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs372002372-?		2E-11	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
804	chr6	28713950	28713952	rs372002372	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs372002372-?		2E-10	(Posterior corona radiata )			NR [8955960] (imputed)	N
804	chr6	28714760	28714761	rs7763390	33740410	Warrier V	2021-03-16	Lancet Psychiatry	Gene-environment correlations and causal effects of childhood maltreatment on physical and mental health: a genetically informed approach.	Childhood maltreatment	185,414 European ancestry individuals	NA	6p22.1	NR	rs7763390-A	0.84	7E-9		0.027	[0.017-0.037] unit decrease	Affymetrix, Illumina [at least 500527] (imputed)	N
804	chr6	28719754	28719755	rs1233587	32358547	Persyn E	2020-05-01	Nat Commun	Genome-wide association study of MRI markers of cerebral small vessel disease in 42,310 participants.	White matter integrity (mean diffusivity)	17,467 European ancestry individuals	NA	6p22.1	ZFP57	rs1233587-T	0.295257	6E-12		0.325855	[0.23-0.42] unit decrease	Affymetrix [NR] (imputed)	N
804	chr6	28719754	28719755	rs1233587	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs1233587-?		2E-8	(Anterior corona radiata)			NR [8955960] (imputed)	N
804	chr6	28721533	28721534	rs1742741	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs1742741-?		4E-9	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
804	chr6	28721533	28721534	rs1742741	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs1742741-?		8E-9	(Retrolenticular part of internal capsule)			NR [8955960] (imputed)	N
804	chr6	28721533	28721534	rs1742741	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	6p22.1	NR	rs1742741-?		2E-8	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
804	chr6	28721533	28721534	rs1742741	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	6p22.1	NR	rs1742741-?		2E-8	(Average across all tracts)			NR [8955960] (imputed)	N
804	chr6	28723687	28723688	rs568609045	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium HDL	115,082 European ancestry individuals	NA	6p22.1		rs568609045-G	0.908816	1E-8		0.0550229	[0.036-0.074] unit increase	NR [11722792] (imputed)	N
804	chr6	28723687	28723688	rs568609045	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large HDL	115,082 European ancestry individuals	NA	6p22.1		rs568609045-G	0.908816	4E-9		0.0550531	[0.037-0.073] unit increase	NR [11722792] (imputed)	N
804	chr6	28723687	28723688	rs568609045	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in HDL	115,082 European ancestry individuals	NA	6p22.1		rs568609045-G	0.908816	4E-8		0.052683	[0.034-0.071] unit increase	NR [11722792] (imputed)	N
804	chr6	28724999	28724999	rs71548373	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	6p22.1	intergenic	rs71548373-?	NR	6E-13		0.0283	[0.021-0.035] unit decrease	Affymetrix [5701386] (imputed)	N
804	chr6	28727592	28727593	rs1233595	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs1233595-?		2E-9	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
804	chr6	28727592	28727593	rs1233595	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs1233595-?		1E-9	(Average across all tracts)			NR [8955960] (imputed)	N
804	chr6	28727592	28727593	rs1233595	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs1233595-?		4E-9	(Average across all tracts)			NR [8955960] (imputed)	N
804	chr6	28727592	28727593	rs1233595	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs1233595-?		3E-9	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
804	chr6	28734675	28734676	rs1233604	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p22.1	AL662890.1	rs1233604-A	NR	4E-8		0.0237945	[0.015-0.032] unit decrease	Affymetrix [319769] (imputed)	N
804	chr6	28736972	28736973	rs9257158	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p22.1	AL662890.1	rs9257158-G	NR	1E-8		0.0194989	[0.013-0.026] unit decrease	Affymetrix [323123] (imputed)	N
804	chr6	28764973	28764974	rs9257190	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p22.1	AL662890.3	rs9257190-G	NR	2E-10		0.0253484	[0.018-0.033] unit decrease	Affymetrix [323858] (imputed)	N
804	chr6	28766359	28766359	rs202065757	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p22.1	NR	rs202065757-?	NR	3E-6		0.1767	[0.1-0.25] unit increase	Illumina [at least 560000] (imputed)	N
804	chr6	28768126	28768127	rs141456208	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs141456208-?		4E-6		1.75	[1.38-2.23]	Illumina [7645193] (imputed)	N
804	chr6	28770682	28770683	rs7739915	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p22.1		rs7739915-G	0.829881	3E-8		0.0298334	[0.019-0.04] unit decrease	NR [11722792] (imputed)	N
804	chr6	28771197	28771198	rs2013652	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p22.1		rs2013652-T	0.605	3E-27				Affymetrix [10369434] (imputed)	N
804	chr6	28776116	28776117	rs4324798	19836008	Landi MT	2009-10-15	Am J Hum Genet	A genome-wide association study of lung cancer identifies a region of chromosome 5p15 associated with risk for adenocarcinoma.	Lung adenocarcinoma	5,739 European ancestry cases, 5,848 European ancestry controls	7,561 European ancestry cases, 13,818 European ancestry controls	6p22.1	TRNAA-UGC	rs4324798-A	0.09	2E-8		1.16	[1.09-1.24]	Illumina [515922]	N
804	chr6	28778918	28778918	rs142204688	32227112	Lee MA	2020-03-30	Hum Mol Genet	Common variation at 16p11.2 is associated with glycosuria in pregnancy: Findings from a genome-wide association study in European women.	Glycosuria in pregnancy (offspring genotype effect)	747 European ancestry cases, 2,991 European ancestry controls	NA	6p22.1	NR	rs142204688-ATTT	0.024554775	2E-9		3.1145043	[2.74466796-3.4843406]	Illumina [9873828] (imputed)	N
804	chr6	28787192	28787193	rs9257226	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6p22.1	XXbac-BPG308K3.5	rs9257226-G	NR	2E-9		0.0237897	[0.016-0.032] unit decrease	Affymetrix [321114] (imputed)	N
804	chr6	28791680	28791681	rs67662386	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	6p22.1	NR	rs67662386-?	NR	5E-7		0.135361	[0.082-0.188] unit increase	NR [13958389] (imputed)	N
804	chr6	28792077	28792078	rs187766969	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p22.1	NR	rs187766969-?	NR	3E-10		0.1907	[0.13-0.25] unit decrease	Illumina [at least 560000] (imputed)	N
804	chr6	28792476	28792477	rs209181	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	XXbac-BPG308K3.5	rs209181-A	NR	3E-15		0.032556	[0.024-0.041] unit decrease	Affymetrix [323858] (imputed)	N
804	chr6	28792476	28792477	rs209181	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	XXbac-BPG308K3.5	rs209181-A	NR	4E-15		0.0325128	[0.024-0.041] unit decrease	Affymetrix [127266] (imputed)	N
804	chr6	28793903	28793904	rs3118359	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	6p22.1	intergenic	rs3118359-T	0.0838	3E-13		0.0378	[0.028-0.048] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
804	chr6	28795855	28795856	rs3135296	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Neuroticism	274,107 British ancestry individuals	NA	6p22.1	NR	rs3135296-?	NR	6E-6		1.0090817	[1.01-1.01]	NR [8968716] (imputed)	N
804	chr6	28795855	28795856	rs3135296	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Major depressive disorder (lifetime)	16,301 British ancestry cases, 50,870 British ancestry controls	NA	6p22.1	NR	rs3135296-?	NR	5E-7		1.1049724	[1.06-1.15]	NR [5276842] (imputed)	N
804	chr6	28795855	28795856	rs3135296	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Help-seeking from a GP (without major depressive disorder symptoms)	8,632 British ancestry cases, 49,493 British ancestry controls	NA	6p22.1	NR	rs3135296-?	NR	1E-6		1.1350738	[1.08-1.19]	NR [5276842] (imputed)	N
804	chr6	28795855	28795856	rs3135296	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Help-seeking from a GP	113,262 British ancestry cases, 219,360 British ancestry controls	NA	6p22.1	NR	rs3135296-A	0.88	4E-12		1.0570824	[1.04-1.07]	NR [5276842] (imputed)	N
804	chr6	28796070	28796071	rs3131337	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	6p22.1	TRIM27	rs3131337-G	0.871891	1E-14		0.0229188	[0.017-0.029] unit increase	Affymetrix [NR] (imputed)	N
804	chr6	28796070	28796071	rs3131337	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	6p22.1	NR	rs3131337-?	NR	7E-6		0.0811	[0.046-0.116] unit decrease	Illumina [at least 560000] (imputed)	N
804	chr6	28796459	28796460	rs3132379	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	XXbac-BPG308K3.5	rs3132379-T	NR	1E-8		0.0232897	[0.015-0.031] unit decrease	Affymetrix [323858] (imputed)	N
804	chr6	28796459	28796460	rs3132379	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	XXbac-BPG308K3.5	rs3132379-T	NR	2E-8		0.0229592	[0.015-0.031] unit decrease	Affymetrix [127266] (imputed)	N
804	chr6	28800009	28800010	rs9278091	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA	6p22.1	NR	rs9278091-?	NR	6E-7		0.0586	[0.036-0.082] unit increase	Illumina [at least 560000] (imputed)	N
804	chr6	28800280	28800281	rs150548387	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Daytime sleep phenotypes	874 European ancestry individuals	NA	6p22.1	RPL13P, ZNF90P2, HCG14, TRIM27	rs150548387-G	NR	7E-7	(daytime resting)	2.54	[1.54-3.54] unit decrease	Affymetrix [7141204] (imputed)	N
804	chr6	28803290	28803291	rs9257248	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p22.1	NR	rs9257248-T	0.114	4E-11		0.0123	[0.0086-0.016] unit decrease	NR [7666894] (imputed)	N
804	chr6	28803290	28803291	rs9257248	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p22.1	LOC442181, LOC401242	rs9257248-A	0.217	7E-20				Illumina [118177]	N
804	chr6	28816720	28816721	rs561122079	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	6p22.1	XXbac-BPG308K3.5	rs561122079-T	0.0012	5E-6		1.4759	[0.84-2.11] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
804	chr6	28821094	28821095	rs9257270	32592749	Butler-Laporte G	2020-06-24	Clin Microbiol Infect	Elevated body-mass index is associated with an increased risk of infectious disease admissions and mortality: a mendelian randomization study.	Sepsis (hospital admission)	4,403 European ancestry cases, 17,612 European ancestry controls	NA	6p22.1	ZFP57	rs9257270-A	0.8	2E-8		0.018	[0.012-0.024] unit increase	NR [NR]	N
804	chr6	28830840	28830849	rs71554969	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p22.1	XXbac-BPG308K3.6	rs71554969-C	NR	8E-12		0.0218335	[0.016-0.028] unit decrease	Affymetrix [323123] (imputed)	N
804	chr6	28831610	28831611	rs3131336	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	6p22.1	TRIM27	rs3131336-C	0.882895	2E-18		0.019064	[0.015-0.023] unit decrease	Affymetrix [12370749]	N
804	chr6	28833143	28833147	rs138792987	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Inguinal hernia	16,725 European ancestry cases, 428,356 European ancestry controls, 1,664 East Asian ancestry cases, 177,062 East Asian ancestry controls	NA	6p22.1		rs138792987-G	NR	8E-11		0.1283	[0.09-0.167] unit decrease	Affymetrix, Illumina [25841416] (imputed)	N
805	chr6	28839907	28839908	rs3118365	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	6p22.1	LINC01623	rs3118365-A	0.0924	6E-12		0.0459	[0.033-0.059] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
805	chr6	28839938	28839939	rs4484511	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6p22.1	NR	rs4484511-?	NR	7E-14				Affymetrix [~ 8270000] (imputed)	N
805	chr6	28840249	28840250	rs113317416	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	XXbac-BPG308K3.6	rs113317416-T	NR	5E-10		0.0278345	[0.019-0.037] unit decrease	Affymetrix [321016] (imputed)	N
805	chr6	28848194	28848195	rs146347028	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Fibroblast growth factor basic levels	7,565 Finnish ancestry individuals	NA	6p22.1	NR	rs146347028-C		3E-6		0.2123	[0.12-0.3] SD units decrease	NR [10700000] (imputed)	N
805	chr6	28854058	28854059	rs7755875	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	6p22.1	TRIM27	rs7755875-A	0.3193	3E-11		0.002	[0.0014-0.0026] unit increase	Affymetrix [15275733] (imputed)	N
805	chr6	28865618	28865618	rs71548400	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6p22.1	HCG14	rs71548400-ATT	NR	4E-9		0.0184951	[0.012-0.025] unit decrease	Affymetrix [321114] (imputed)	N
805	chr6	28866209	28866213	rs150164120	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs150164120-?		4E-10	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
805	chr6	28866209	28866213	rs150164120	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs150164120-?		2E-10	(Average across all tracts)			NR [8955960] (imputed)	N
805	chr6	28866209	28866213	rs150164120	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs150164120-?		1E-9	(Sagittal stratum)			NR [8955960] (imputed)	N
805	chr6	28866368	28866368	rs147662640	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs147662640-?		4E-8	(Average across all tracts)			NR [8955960] (imputed)	N
805	chr6	28866368	28866368	rs147662640	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs147662640-?		2E-8	(Cingulate gyrus)			NR [8955960] (imputed)	N
805	chr6	28868493	28868494	rs3132374	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in diabetes	70,762 European ancestry individuals, 20,967 African American individuals	NA	6p22.1	TRIM27	rs3132374-C	0.916	3E-9		0.959	[0.64-1.27] unit increase	Affymetrix [NR] (imputed)	N
805	chr6	28872445	28872446	rs209126	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p22.1	TRIM27	rs209126-T		6E-27		0.023	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
805	chr6	28877246	28877247	rs3135293	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hyperthyroidism	3,557 European ancestry cases, 456,942 European ancestry controls, 994 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	6p22.1		rs3135293-C	NR	1E-13		0.329	[0.24-0.42] unit increase	Affymetrix, Illumina [25841580] (imputed)	N
805	chr6	28884149	28884150	rs3131099	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Liver iron content	32,858 European ancestry individuals	NA	6p22.1	TRIM27	rs3131099-?	NR	9E-18	(conditional)	0.0654	NR mg/g decrease	Affymetrix [9390170] (imputed)	N
805	chr6	28889414	28889415	rs144996521	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	6p22.1	TRIM27	rs144996521-G	0.999717	5E-10		0.148497	[0.1-0.2] unit increase	NR [13737936] (imputed)	N
805	chr6	28893533	28893534	rs3131103	31219150	Ekenberg C	2019-06-13	J Infect Dis	Single nucleotide polymorphisms in HLA alleles are associated with HIV-1 viral load in demographically diverse, ART-naive participants from the START trial.	Pre-treatment viral load in HIV-1 infection	1,398 European ancestry individuals, 572 Black individuals, 418 Hispanic individuals, 13 Asian ancestry individuals, 39 individuals	NA	6p22.1	TRIM27	rs3131103-G	0.07	9E-16		0.37	[0.28-0.46] unit decrease	Affymetrix [339439]	N
805	chr6	28894798	28894799	rs28400872	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	6p22.1		rs28400872-C	0.340661	5E-11		0.0196364	[0.014-0.025] unit decrease	Illumina [13479924] (imputed)	N
805	chr6	28896774	28896775	rs9468445	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p22.1	NR	rs9468445-?	NR	4E-9		0.1617	[0.11-0.21] unit increase	Illumina [at least 560000] (imputed)	N
805	chr6	28896913	28896914	rs2015436	26087016	Pappa I	2015-06-18	Am J Med Genet B Neuropsychiatr Genet	A genome-wide approach to children's aggressive behavior: The EAGLE consortium.	Childhood and early adolescence aggressive behavior	18,988 European ancestry individuals	NA	6p22.1	TRIM27	rs2015436-T	0.73	2E-6				Affymetrix, Illumina [up to 3856236] (imputed)	N
805	chr6	28897632	28897633	rs1233508	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	6p22.1	TRIM27	rs1233508-T	0.463	2E-16		0.0098	[0.0074-0.0122] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
805	chr6	28897856	28897859	rs200822404	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	6p22.1	NR	rs200822404-?	NR	4E-6		0.1076	[0.062-0.153] unit decrease	Illumina [at least 560000] (imputed)	N
805	chr6	28904709	28904710	rs144965899	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6p22.1	Intergenic	rs144965899-C	0.0463	8E-11	(MTAG)	0.0206	[0.014-0.027] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
805	chr6	28905790	28905791	rs3130895	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p22.1	TRIM27, C6orf100	rs3130895-A	0.218	4E-19				Illumina [118177]	N
805	chr6	28912398	28912399	rs140736187	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p22.1	NR	rs140736187-?	NR	2E-7		0.2249	[0.14-0.31] unit increase	Illumina [at least 560000] (imputed)	N
805	chr6	28914740	28914741	rs111469561	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p22.1	NR	rs111469561-?	NR	1E-6		0.29	[0.17-0.41] unit increase	Illumina [at least 560000] (imputed)	N
805	chr6	28915107	28915108	rs763009	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	6p22.1	LINC01556, ZNF311	rs763009-?	NR	7E-7		0.014226723	[0.0086-0.0199] unit decrease	Illumina [27896057] (imputed)	N
805	chr6	28916251	28916252	rs4947339	20526338	Johnson AD	2010-06-06	Nat Genet	Genome-wide meta-analyses identifies seven loci associated with platelet aggregation in response to agonists.	Platelet aggregation	Up to 3,991 European ancestry individuals	Up to 840 African American individuals	6p22.1	TRIM27	rs4947339-T	0.438	2E-6	(epinehprine)			Affymetrix, Illumina [~ 2330000] (imputed)	N
805	chr6	28916593	28916594	rs3130844	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA	6p22.1	NR	rs3130844-?	NR	7E-6		0.0564	[0.032-0.081] unit increase	Illumina [at least 560000] (imputed)	N
805	chr6	28916834	28916835	rs114683528	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Daytime sleep phenotypes	874 European ancestry individuals	NA	6p22.1	C6orf100, KRT18P1, TRIM27, HCG15, HCG16, ZNF311	rs114683528-T	NR	1E-6	(daytime resting)	2.435	[1.46-3.41] unit decrease	Affymetrix [7141204] (imputed)	N
805	chr6	28926219	28926220	rs9257408	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	6p22.1	NR	rs9257408-G	0.4934	2E-10		0.0314	[0.022-0.041] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
805	chr6	28926219	28926220	rs9257408	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	6p22.1		rs9257408-C	NR	3E-7		1.03	[1.02-1.04]	Affymetrix, Illumina [NR] (imputed)	N
805	chr6	28926219	28926220	rs9257408	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p22.1	intergenic	rs9257408-C	0.41	7E-8	(EA)	1.02	[1-1.04] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
805	chr6	28926219	28926220	rs9257408	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	46,785 European ancestry cases, 42,892 European ancestry controls	NA	6p22.1	intergenic	rs9257408-C	0.38	5E-7		1.05	[1.03-1.08]	Affymetrix, Illumina [~ 14000000] (imputed)	N
805	chr6	28926219	28926220	rs9257408	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	15,748 European ancestry cases, 18,084 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls	6p22.1	Intergenic	rs9257408-C	0.38	5E-8		1.05	[1.03-1.08]	Affymetrix, Illumina [~ 11600000] (imputed)	N
805	chr6	28934351	28934352	rs148696809	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	6p22.1		rs148696809-?	NR	7E-9				NR [NR]	N
805	chr6	28934351	28934352	rs148696809	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma and major depressive disorder	46,802 European ancestry asthma cases, 59,851 European ancestry major depressive disorder cases, 460,635 European ancestry controls	NA	6p22.1	Intergenic	rs148696809-?	NR	5E-9				Affymetrix [up to 13554551] (imputed)	N
805	chr6	28934351	28934352	rs148696809	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	6p22.1	Intergenic	rs148696809-T	0.8828	8E-20		0.0406	[0.032-0.049] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
805	chr6	28934351	28934352	rs148696809	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Squamous cell lung carcinoma	7,426 European ancestry cases, 55,627 European ancestry controls	NA	6p22.1	LINC01556, ZNF311	rs148696809-C	0.086719155	4E-11		1.2477136	[1.168498995-1.332298319]	Illumina [10439017] (imputed)	N
805	chr6	28934351	28934352	rs148696809	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	6p22.1	LINC01556, ZNF311	rs148696809-C	0.086604881	3E-12		1.1571189	[1.11078617-1.205384399]	Illumina [10439017] (imputed)	N
805	chr6	28944085	28944086	rs3130887	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Polyunsaturated fatty acid levels	115,006 European ancestry individuals	NA	6p22.1		rs3130887-G	0.881305	8E-10		0.0379668	[0.026-0.05] unit increase	NR [11722792] (imputed)	N
805	chr6	28954292	28954293	rs3129791	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p22.1	NR	rs3129791-A	0.1148	2E-11		0.0125	[0.0088-0.0162] unit decrease	NR [7666894] (imputed)	N
805	chr6	28965511	28965512	rs114357009	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	6p22.1	C6orf100, HCG14, LOC401242, LOC100129636, OR2B3, OR2H1, OR2J2, OR2J3, OR2W1, OR5V1, OR10C1, OR11A1, OR12D2, OR12D3, OR14J1, TRIM27, ZNF311	rs114357009-A	0.049997	2E-10		1.1579555	[1.11-1.2]	Affymetrix [8274727] (imputed)	N
806	chr6	28973497	28973498	rs77514138	32227112	Lee MA	2020-03-30	Hum Mol Genet	Common variation at 16p11.2 is associated with glycosuria in pregnancy: Findings from a genome-wide association study in European women.	Glycosuria in pregnancy (offspring genotype effect)	747 European ancestry cases, 2,991 European ancestry controls	NA	6p22.1	NR	rs77514138-T	0.01849013	2E-9		3.6386764	[3.217150999-4.060201879]	Illumina [9873828] (imputed)	N
806	chr6	28980706	28980707	rs3130893	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium HDL	115,082 European ancestry individuals	NA	6p22.1		rs3130893-A	0.880989	2E-10		0.037629	[0.026-0.049] unit increase	NR [11722792] (imputed)	N
806	chr6	28980706	28980707	rs3130893	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-6 fatty acid levels	115,006 European ancestry individuals	NA	6p22.1		rs3130893-A	0.880993	9E-9		0.0356831	[0.024-0.048] unit increase	NR [11722792] (imputed)	N
806	chr6	28980706	28980707	rs3130893	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Linoleic acid levels	115,006 European ancestry individuals	NA	6p22.1		rs3130893-A	0.880993	5E-9		0.0364876	[0.024-0.049] unit increase	NR [11722792] (imputed)	N
806	chr6	28983273	28983274	rs3131082	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p22.1	NR	rs3131082-?	NR	2E-7		0.1949	[0.12-0.27] unit decrease	Illumina [at least 560000] (imputed)	N
806	chr6	28984754	28984755	rs3129795	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs3129795-?		8E-6		1.0526316	[1.03-1.08]	Illumina [7645193] (imputed)	N
806	chr6	28984754	28984755	rs3129795	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs3129795-?		2E-6		1.6129031	[1.32-1.96]	Illumina [7645193] (imputed)	N
806	chr6	28992158	28992159	rs3129797	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	6p22.1	ZNF311	rs3129797-C	0.882471	2E-20		0.0273248	[0.022-0.033] unit increase	Affymetrix [NR] (imputed)	N
806	chr6	29026586	29026587	rs114631266	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p22.1	OR2W1	rs114631266-C	0.974	2E-6		0.284	[0.17-0.4] unit increase	Affymetrix, Illumina [7374092] (imputed)	N
806	chr6	29027928	29027929	rs114415956	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	OR2P1P	rs114415956-T	NR	3E-10		0.0401608	[0.028-0.053] unit decrease	Affymetrix [321016] (imputed)	N
806	chr6	29030942	29030942	rs559462124	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs559462124-?		5E-9	(Average across all tracts)			NR [8955960] (imputed)	N
806	chr6	29030942	29030942	rs559462124	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs559462124-?		3E-9	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
806	chr6	29030942	29030942	rs559462124	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs559462124-?		2E-9	(Posterior corona radiata )			NR [8955960] (imputed)	N
806	chr6	29030942	29030942	rs559462124	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs559462124-?		2E-8	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
806	chr6	29030942	29030942	rs559462124	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs559462124-?		2E-8	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
806	chr6	29030942	29030942	rs559462124	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs559462124-?		2E-8	(Cingulate gyrus)			NR [8955960] (imputed)	N
806	chr6	29030942	29030942	rs559462124	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs559462124-?		6E-11	(Posterior corona radiata )			NR [8955960] (imputed)	N
806	chr6	29030942	29030942	rs559462124	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs559462124-?		4E-8	(Cingulate gyrus)			NR [8955960] (imputed)	N
806	chr6	29030942	29030942	rs559462124	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs559462124-?		4E-11	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
806	chr6	29030942	29030942	rs559462124	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs559462124-?		2E-8	(Average across all tracts)			NR [8955960] (imputed)	N
806	chr6	29030942	29030942	rs559462124	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs559462124-?		2E-10	(Superior corona radiata)			NR [8955960] (imputed)	N
806	chr6	29030942	29030942	rs559462124	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	6p22.1	NR	rs559462124-?		2E-8	(Average across all tracts)			NR [8955960] (imputed)	N
806	chr6	29030942	29030942	rs559462124	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs559462124-?		4E-8	(Posterior corona radiata )			NR [8955960] (imputed)	N
806	chr6	29030942	29030942	rs559462124	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs559462124-?		3E-8	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
806	chr6	29044700	29044701	rs3131085	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p22.1	GABBR1, OR12D3, XXbac-BPG308K3.5, TRIM27, AL662791.1, OR2AD1P, OR2P1P, OR2B3, XXbac-BCX196D17.5, OR2N1P, OR2H4P, OR2B4P, XXbac-BPG308K3.6, RPL13P, ZNF90P2, HCG14, RNU6-930P, LINC01556, KRT18P1, RN7SL471P, HCG15, HCG16, ZNF311, XXbac-BPG258E24.10, OR2W1, SAR1P1, OR2J3, OR2J4P, OR2J2, AL645937.1, XXbac-BPG308J9.3, OR2U2P, OR14J1, OR5V1, OR10C1, OR11A1, XXbac-BPG13B8.11, OR2H1, UBDP1, MAS1LP1, MAS1L, RPS17P1, XXbac-BPG13B8.10, OR2I1P, UBD	rs3131085-A	0.07580321	1E-9	(EA, MHC class I polypeptide-related sequence A)	0.5111	[0.35-0.67] unit increase	Affymetrix [509946]	N
806	chr6	29048688	29048689	rs3129787	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129787-?		6E-11	(Posterior corona radiata )			NR [8955960] (imputed)	N
806	chr6	29048688	29048689	rs3129787	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129787-?		4E-11	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
806	chr6	29048688	29048689	rs3129787	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129787-?		3E-8	(Cingulate gyrus)			NR [8955960] (imputed)	N
806	chr6	29048688	29048689	rs3129787	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129787-?		5E-9	(Cingulate gyrus)			NR [8955960] (imputed)	N
806	chr6	29048688	29048689	rs3129787	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129787-?		5E-12	(Posterior corona radiata )			NR [8955960] (imputed)	N
806	chr6	29048688	29048689	rs3129787	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129787-?		2E-8	(Anterior corona radiata)			NR [8955960] (imputed)	N
806	chr6	29048688	29048689	rs3129787	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129787-?		2E-12	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
806	chr6	29048688	29048689	rs3129787	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129787-?		3E-9	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
806	chr6	29048688	29048689	rs3129787	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129787-?		5E-8	(Posterior corona radiata )			NR [8955960] (imputed)	N
806	chr6	29052257	29052257	rs11275996	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs11275996-?		4E-8	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
806	chr6	29052257	29052257	rs11275996	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs11275996-?		7E-9	(Superior corona radiata)			NR [8955960] (imputed)	N
806	chr6	29057638	29057639	rs3129788	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p22.1	OR2B3P, OR2J3	rs3129788-A	0.217	7E-19				Illumina [118177]	N
806	chr6	29062550	29062551	rs115166140	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p22.1	NR	rs115166140-?	NR	1E-9		0.1623	[0.11-0.21] unit increase	Illumina [at least 560000] (imputed)	N
806	chr6	29064991	29064992	rs4463283	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p22.1	OR2B3, OR2J3	rs4463283-A	0.06	1E-6	(EA)	2.61	[1.74-3.90]	Illumina [up to 547389]	N
806	chr6	29075087	29075088	rs3129178	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p22.1	NR	rs3129178-A	0.0951	6E-9	(EA)	0.0669	[0.044-0.089] unit decrease	Illumina [~ 11800000] (imputed)	N
806	chr6	29081160	29081161	rs3129106	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p22.1	NR	rs3129106-?	NR	7E-6		0.0757	[0.043-0.109] unit decrease	Illumina [at least 560000] (imputed)	N
806	chr6	29082221	29082222	rs115328582	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	OR2J3	rs115328582-G	NR	4E-14		0.033147	[0.025-0.042] unit decrease	Affymetrix [321016] (imputed)	N
806	chr6	29084231	29084232	rs3129109	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	6p22.1	OR2J3	rs3129109-T	0.39	2E-17		0.032	[NR] unit decrease	Affymetrix, Illumina [2834208] (imputed)	N
807	chr6	29102860	29102861	rs3129119	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129119-?		3E-11	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
807	chr6	29102860	29102861	rs3129119	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129119-?		2E-8	(Superior corona radiata)			NR [8955960] (imputed)	N
807	chr6	29102860	29102861	rs3129119	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129119-?		2E-11	(Superior corona radiata)			NR [8955960] (imputed)	N
807	chr6	29102860	29102861	rs3129119	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129119-?		1E-9	(Retrolenticular part of internal capsule)			NR [8955960] (imputed)	N
807	chr6	29111774	29111775	rs3129120	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Major depressive disorder (lifetime)	16,301 British ancestry cases, 50,870 British ancestry controls	NA	6p22.1	NR	rs3129120-?	NR	4E-7		1.1049724	[1.06-1.15]	NR [5276842] (imputed)	N
807	chr6	29111774	29111775	rs3129120	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Help-seeking from a psychiatrist	36,286 British ancestry cases, 297,126 British ancestry controls	NA	6p22.1	NR	rs3129120-T	0.876	1E-10		1.081081	NR	NR [5276842] (imputed)	N
807	chr6	29118746	29118747	rs3130725	27668658	Iotchkova V	2016-11-01	Nat Genet	Discovery and refinement of genetic loci associated with cardiometabolic risk using dense imputation maps.	Cardiometabolic and hematological traits	up to 35,981 European ancestry individuals	up to 102,505 European ancestry individuals	6p22.1	ZNF311	rs3130725-G		3E-26	(WBC)	0.008	[0.006-0.01] unit decrease	Affymetrix, Illumina [17000000] (imputed)	N
807	chr6	29126494	29126495	rs62405961	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	OR2J2	rs62405961-A	NR	2E-8		0.0707669	[0.046-0.095] unit decrease	Affymetrix [321016] (imputed)	N
807	chr6	29130275	29130276	rs3129137	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129137-?		3E-8	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
807	chr6	29133641	29133642	rs4947263	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p22.1	NR	rs4947263-T	0.1178	3E-12		0.0127	[0.0092-0.0162] unit decrease	NR [7666894] (imputed)	N
807	chr6	29135796	29135801	rs369812099	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	6p22.1		rs369812099-T	NR	3E-8		0.0145	[0.0094-0.0196] unit increase	Affymetrix, Illumina [20535873] (imputed)	N
807	chr6	29138314	29138315	rs3129151	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	NR	rs3129151-?	NR	7E-8		5.388	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
807	chr6	29138948	29138949	rs3130740	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3130740-?		4E-9	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
807	chr6	29141742	29141743	rs3129157	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p22.1	OR2J2	rs3129157-A		3E-33		0.068	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
807	chr6	29144531	29144532	rs9257566	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	6p22.1	NR	rs9257566-?	NR	7E-30		1.2277772	[1.19-1.26]	Affymetrix, Illumina [12447948] (imputed)	N
807	chr6	29145622	29145623	rs9295795	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	6p22.1		rs9295795-T	0.94311	2E-8		0.026	[0.016-0.036] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
807	chr6	29147704	29147705	rs186983332	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p22.1	NR	rs186983332-?	NR	7E-6		0.2003	[0.11-0.29] unit decrease	Illumina [at least 560000] (imputed)	N
807	chr6	29148404	29148405	rs114503016	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p22.1		rs114503016-C	0.986	4E-13				Affymetrix [10369434] (imputed)	N
807	chr6	29148404	29148405	rs114503016	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p22.1		rs114503016-C	0.986	3E-16				Affymetrix [10369434] (imputed)	N
807	chr6	29149441	29149442	rs3116816	32595297	Kweon K	2018-04-01	Soa Chongsonyon Chongsin Uihak	Genome-Wide Analysis Reveals Four Novel Loci for Attention-Deficit Hyperactivity Disorder in Korean Youths.	Attention deficit hyperactivity disorder (inattention symptoms)	27 Korean ancestry child sibling pairs	NA	6p22.1	OR2J2, OR14J1	rs3116816-A	0.398	2E-7				Affymetrix [432921]	N
807	chr6	29153154	29153155	rs3130746	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p22.1	NR	rs3130746-?	NR	3E-6		0.1783	[0.1-0.25] unit increase	Illumina [at least 560000] (imputed)	N
807	chr6	29155748	29155749	rs3129171	32358547	Persyn E	2020-05-01	Nat Commun	Genome-wide association study of MRI markers of cerebral small vessel disease in 42,310 participants.	White matter integrity (fractional anisotropy)	17,663 European ancestry individuals	NA	6p22.1	ZFP57a, OR2J2, OR2H4P, XXbac-BPG308J9.3	rs3129171-A	0.242404	2E-9		0.294752	[0.2-0.39] unit increase	Affymetrix [NR] (imputed)	N
807	chr6	29155748	29155749	rs3129171	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129171-?		3E-9	(Retrolenticular part of internal capsule)			NR [8955960] (imputed)	N
807	chr6	29155748	29155749	rs3129171	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129171-?		3E-9	(Anterior corona radiata)			NR [8955960] (imputed)	N
807	chr6	29155748	29155749	rs3129171	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129171-?		2E-11	(Average across all tracts)			NR [8955960] (imputed)	N
807	chr6	29155748	29155749	rs3129171	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129171-?		9E-9	(Anterior corona radiata)			NR [8955960] (imputed)	N
807	chr6	29155748	29155749	rs3129171	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129171-?		4E-10	(Average across all tracts)			NR [8955960] (imputed)	N
807	chr6	29155748	29155749	rs3129171	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129171-?		2E-8	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
807	chr6	29158583	29158584	rs185008237	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	6p22.1	NR	rs185008237-?	NR	4E-6		0.0077326	[0.0045-0.011] unit increase	Affymetrix [805426] (imputed)	N
807	chr6	29165036	29165037	rs114224598	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling miserable	376,097 European ancestry individuals	NA	6p22.1	NR	rs114224598-A	0.0456381	3E-8		5.52	z score increase	NR [10847151] (imputed)	N
807	chr6	29165036	29165037	rs114224598	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p22.1	NR	rs114224598-?	NR	6E-9		0.175	[0.12-0.23] unit decrease	Illumina [at least 560000] (imputed)	N
807	chr6	29180061	29180062	rs139598127	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p22.1	NR	rs139598127-A	0.01045	2E-8	(SBDS)	0.06239	NR unit increase	Illumina [1671387] (imputed)	N
807	chr6	29180720	29180721	rs9257616	24047820	St Pourcain B	2013-09-18	Mol Autism	Common variation contributes to the genetic architecture of social communication traits.	Social communication problems	5,584 European ancestry children	1,364 European ancestry children	6p22.1	OR2J2, TRIM27, ZNF311, OR2W1, OR2B3, LOC651503, OR214J1, OR5V1, OR12D3, OR2J3	rs9257616-G	0.56	3E-7		0.093	[0.058-0.128] unit increase	Illumina [~ 2500000] (imputed)	N
807	chr6	29206250	29206251	rs3117342	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Cognitive traits (MTAG)	331,679 British ancestry individuals	NA	6p22.1		rs3117342-?	NR	2E-12				NR [7857346] (imputed)	N
807	chr6	29206682	29206683	rs3130820	29483656	Pardinas AF	2018-02-26	Nat Genet	Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.	Schizophrenia	40,675 European ancestry cases, 64,643 European ancestry controls	1,651 European ancestry cases, 4,111 cases, 142,717 European ancestry controls, 11,507 controls	6p22.1	xMHC	rs3130820-?	NR	2E-44		1.281	[1.25-1.32]	Illumina [8000000] (imputed)	N
807	chr6	29210595	29210596	rs3117340	30271922	Clifton EAD	2018-05-03	Commun Biol	Genome-wide association study for risk taking propensity indicates shared pathways with body mass index.	Smoking status (ever vs never smokers)	207,229 European ancestry ever smoker cases, 243,177 European ancestry never smoker controls	NA	6p22.1	NR	rs3117340-G	0.622344	9E-7		0.0051953	[0.0031-0.0073] unit increase	Affymetrix [7736308] (imputed)	N
807	chr6	29210595	29210596	rs3117340	30271922	Clifton EAD	2018-05-03	Commun Biol	Genome-wide association study for risk taking propensity indicates shared pathways with body mass index.	Self-reported risk-taking behaviour	113,882 European ancestry cases, 322,354 European ancestry controls	NA	6p22.1	OR14J1	rs3117340-G	0.62	7E-9		1.024	[1.016-1.033]	Affymetrix [7736308] (imputed)	N
807	chr6	29210595	29210596	rs3117340	30181555	Strawbridge RJ	2018-09-04	Transl Psychiatry	Genetics of self-reported risk-taking behaviour, trans-ethnic consistency and relevance to brain gene expression.	Self-reported risk-taking behaviour	83,677 British ancestry cases, 244,662 British ancestry controls	2,764 South Asian ancestry cases, 3,139 African Caribbean ancestry cases, 16,169 European ancestry cases, 3,866 mixed ancestry cases, 4,267 South Asian ancestry controls, 4,341 African Caribbean ancestry controls, 31,814 European ancestry controls, 5,988 mixed ancestry controls	6p22.1	NR	rs3117340-T	0.38	1E-8		0.03	[0.02-0.04] unit decrease	Affymetrix [NR] (imputed)	N
807	chr6	29212634	29212635	rs113711385	32227112	Lee MA	2020-03-30	Hum Mol Genet	Common variation at 16p11.2 is associated with glycosuria in pregnancy: Findings from a genome-wide association study in European women.	Glycosuria in pregnancy (offspring genotype effect)	747 European ancestry cases, 2,991 European ancestry controls	NA	6p22.1	NR	rs113711385-C	0.018433461	2E-9		3.6226652	[3.201361247-4.043969167]	Illumina [9873828] (imputed)	N
807	chr6	29217513	29217514	rs3117334	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	6p22.1	NR	rs3117334-T	0.501	7E-9		0.00785988	[0.0052-0.0105] unit increase	NR [~ 9732723] (imputed)	N
807	chr6	29223492	29223493	rs3130825	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p22.1		rs3130825-?	NR	2E-9		0.0208387	[0.015-0.027] unit decrease	Affymetrix [20259828] (imputed)	N
807	chr6	29223910	29223911	rs149016863	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs149016863-?		3E-6		1.74	[1.38-2.20]	Illumina [7645193] (imputed)	N
807	chr6	29225024	29225025	rs149702363	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma and major depressive disorder	46,802 European ancestry asthma cases, 59,851 European ancestry major depressive disorder cases, 460,635 European ancestry controls	NA	6p22.1	OR2H1, OR5V1, OR10C1, OR11A1, OR12D2, OR12D3, OR14J1	rs149702363-?	NR	4E-10				Affymetrix [up to 13554551] (imputed)	N
808	chr6	29230128	29230129	rs566858049	30181555	Strawbridge RJ	2018-09-04	Transl Psychiatry	Genetics of self-reported risk-taking behaviour, trans-ethnic consistency and relevance to brain gene expression.	Self-reported risk-taking behaviour	83,677 British ancestry cases, 244,662 British ancestry controls	2,764 South Asian ancestry cases, 3,139 African Caribbean ancestry cases, 16,169 European ancestry cases, 3,866 mixed ancestry cases, 4,267 South Asian ancestry controls, 4,341 African Caribbean ancestry controls, 31,814 European ancestry controls, 5,988 mixed ancestry controls	6p22.1	HLA	rs566858049-T	0.6	7E-9		0.031	[0.021-0.041] unit increase	Affymetrix [NR] (imputed)	N
808	chr6	29244218	29244219	rs144447022	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	6p22.1		rs144447022-?	NR	4E-9				NR [NR]	N
808	chr6	29244218	29244219	rs144447022	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	67,764 individuals	NA	6p22.1	NR	rs144447022-?		9E-28				NR [8377093]	N
808	chr6	29244218	29244219	rs144447022	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms (MTAG)	955,012 individuals	NA	6p22.1	NR	rs144447022-?		3E-12				NR [520857]	N
808	chr6	29244218	29244219	rs144447022	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Bipolar disorder (MTAG)	65,682 individuals	NA	6p22.1	NR	rs144447022-?		7E-20				NR [520857]	N
808	chr6	29244218	29244219	rs144447022	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	6p22.1	XXbac-BPG308J9.3	rs144447022-T	NR	1E-13		0.036134973	[0.027-0.046] unit increase	Affymetrix [NR]	N
808	chr6	29244218	29244219	rs144447022	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	6p22.1	NR	rs144447022-G	NR	2E-28		1.25	[NR]	Illumina [7158791] (imputed)	N
808	chr6	29248148	29248149	rs3130834	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p22.1	NR	rs3130834-C	0.0955	5E-9	(EA)	0.0672	[0.045-0.09] unit decrease	Illumina [~ 11800000] (imputed)	N
808	chr6	29248564	29248564	rs5875188	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p22.1	OR2J2, OR14J1	rs5875188-?	0.06	7E-6	(EA)	2.52	[1.66-3.83]	Illumina [up to 547389]	N
808	chr6	29252757	29252758	rs116466121	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	6p22.1	Intergenic	rs116466121-A	0.8753	8E-9	(MTAG)	0.0156	[0.01-0.021] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
808	chr6	29252757	29252758	rs116466121	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	6p22.1	Intergenic	rs116466121-A	0.8759	2E-12	(MTAG)	0.0177	[0.013-0.023] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
808	chr6	29254981	29254982	rs9257681	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p22.1	NR	rs9257681-G	0.1151	2E-12		0.0131	[0.0094-0.0168] unit decrease	NR [7666894] (imputed)	N
808	chr6	29256060	29256060	rs6149499	30093612	O'Mara TA	2018-08-09	Nat Commun	Identification of nine new susceptibility loci for endometrial cancer.	Endometrial cancer (endometrioid histology)	8,758 European ancestry cases, 46,126 European ancestry controls	NA	6p22.1	LOC101929006, LOC105375005	rs6149499-G	0.870856	6E-7		1.16	[1.09-1.23]	Affymetrix, Illumina [~ 11700000] (imputed)	N
808	chr6	29256419	29256420	rs1884123	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	6p22.1	OR14J1	rs1884123-A	0.3614	3E-8		0.011205866	[0.0072-0.0152] unit decrease	Illumina [9339358] (imputed)	N
808	chr6	29257966	29257967	rs1033568	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA		NR	rs1033568-A	0.429	1E-6		1.081	[1.05-1.11]	Illumina [11270530] (imputed)	N
808	chr6	29260430	29260431	rs3117425	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	6p22.1	NR	rs3117425-T	NR	2E-8		0.02019	[0.013-0.027] unit decrease	Affymetrix [10847151] (imputed)	N
808	chr6	29260430	29260431	rs3117425	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling nervous	373,121 European ancestry individuals	NA	6p22.1	ZNF391	rs3117425-T	0.119369	5E-8		5.47	z score decrease	NR [10847151] (imputed)	N
808	chr6	29272011	29272012	rs3117426	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3117426-?		4E-10	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
808	chr6	29272011	29272012	rs3117426	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3117426-?		2E-8	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
808	chr6	29272011	29272012	rs3117426	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3117426-?		1E-9	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
808	chr6	29272011	29272012	rs3117426	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3117426-?		4E-8	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
808	chr6	29274135	29274136	rs3117427	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Receptor for advanced glycosylation end products levels	21,758 European ancestry individuals	9,173 individuals	6p22.1		rs3117427-T	0.9	2E-11		0.0988	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
808	chr6	29275227	29275228	rs61735224	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p22.1	NR	rs61735224-T	0.01045	2E-8	(SBDS)	0.06239	NR unit increase	Illumina [1671387] (imputed)	N
808	chr6	29283671	29283672	rs3129682	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p22.1	GABBR1, OR12D3, XXbac-BPG308K3.5, TRIM27, AL662791.1, OR2AD1P, OR2P1P, OR2B3, XXbac-BCX196D17.5, OR2N1P, OR2H4P, OR2B4P, XXbac-BPG308K3.6, RPL13P, ZNF90P2, HCG14, RNU6-930P, LINC01556, KRT18P1, RN7SL471P, HCG15, HCG16, ZNF311, XXbac-BPG258E24.10, OR2W1, SAR1P1, OR2J3, OR2J4P, OR2J2, AL645937.1, XXbac-BPG308J9.3, OR2U2P, OR14J1, OR5V1, OR10C1, OR11A1, XXbac-BPG13B8.11, OR2H1, UBDP1, MAS1LP1, MAS1L, RPS17P1, XXbac-BPG13B8.10, OR2I1P, UBD	rs3129682-T	0.07742915	1E-19	(EA, MHC class I polypeptide-related sequence B)	0.7369	[0.58-0.89] unit decrease	Affymetrix [509946]	N
808	chr6	29283960	29283960	rs201452814	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-17 levels	7,760 Finnish ancestry individuals	NA	6p22.1	NR	rs201452814-GT		4E-6		0.2398	[0.14-0.34] SD units increase	NR [10700000] (imputed)	N
808	chr6	29283960	29283960	rs201452814	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Fibroblast growth factor basic levels	7,565 Finnish ancestry individuals	NA	6p22.1	NR	rs201452814-GT		4E-6		0.242	[0.14-0.34] SD units increase	NR [10700000] (imputed)	N
808	chr6	29300273	29300274	rs146977025	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p22.1	NR	rs146977025-T	0.01045	2E-8	(SBDS)	0.06239	NR unit increase	Illumina [1671387] (imputed)	N
808	chr6	29302029	29302030	rs6903989	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	6p22.1	NR	rs6903989-C		2E-8		0.07	[0.05-0.09] unit increase	NR [NR]	N
808	chr6	29306655	29306656	rs9257745	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	DDX6P1	rs9257745-T	NR	8E-10		0.0256365	[0.017-0.034] unit decrease	Affymetrix [321016] (imputed)	N
808	chr6	29314963	29314964	rs7745768	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	6p22.1	NR	rs7745768-?	NR	8E-7		0.131782	[0.08-0.184] unit increase	NR [13958389] (imputed)	N
808	chr6	29317176	29317177	rs148466862	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	6p22.1		rs148466862-?	NR	5E-12		0.0507	unit increase	NR [NR]	N
808	chr6	29317176	29317177	rs148466862	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Subjective well-being (MTAG)	388,538 European ancestry individuals	NA	6p22.1	NR	rs148466862-T	0.0411	8E-12		0.0324	[0.023-0.042] unit decrease	Illumina [NR] (imputed)	N
808	chr6	29317176	29317177	rs148466862	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Neuroticism (MTAG)	168,105 European ancestry individuals	NA	6p22.1	NR	rs148466862-T	0.0463	5E-10		0.0438	[0.03-0.058] unit increase	Illumina [NR] (imputed)	N
808	chr6	29317176	29317177	rs148466862	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms (MTAG)	354,862 European ancestry individuals	NA	6p22.1	NR	rs148466862-T	0.0425	1E-10		0.0343	[0.024-0.045] unit increase	Illumina [NR] (imputed)	N
808	chr6	29322865	29322866	rs9357080	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6p22.1	NR	rs9357080-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
808	chr6	29323654	29323655	rs7761746	30108155	Hebbar P	2018-08-14	J Lipid Res	Genome-wide association study identifies novel recessive genetic variants for high TGs in an Arab population.	Triglyceride levels	1,353 Kuwaiti ancestry individuals	1,176 Kuwaiti ancestry individuals	6p22.1	OR5V1	rs7761746-A	NR	1E-9		6.066	z-score increase	Illumina [632375]	N
808	chr6	29327042	29327043	rs9257774	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	6p22.1		rs9257774-?	NR	5E-8				Affymetrix [NR] (imputed)	N
808	chr6	29327042	29327043	rs9257774	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p22.1		rs9257774-G	0.499	5E-24				Affymetrix [10369434] (imputed)	N
808	chr6	29328833	29328834	rs7754402	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs7754402-?		2E-8	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
808	chr6	29331818	29331819	rs2207699	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6p22.1	OR5V1	rs2207699-T	NR	2E-10		0.0197089	[0.014-0.026] unit increase	Affymetrix [321114] (imputed)	N
808	chr6	29335660	29335661	rs9257794	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6p22.1		rs9257794-?	NR	7E-6		1.05596	[1.03-1.08]	NR [685523]	N
808	chr6	29335660	29335661	rs9257794	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	OR5V1	rs9257794-T	NR	1E-10		0.0227562	[0.016-0.03] unit decrease	Affymetrix [323858] (imputed)	N
808	chr6	29335660	29335661	rs9257794	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	OR5V1	rs9257794-T	NR	9E-11		0.022922	[0.016-0.03] unit decrease	Affymetrix [127266] (imputed)	N
808	chr6	29335660	29335661	rs9257794	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6p22.1	OR5V1	rs9257794-T	NR	3E-9		0.0207731	[0.014-0.028] unit decrease	Affymetrix [321114] (imputed)	N
808	chr6	29337074	29337075	rs3930883	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p22.1		rs3930883-G	0.357	7E-41				Affymetrix [10369434] (imputed)	N
808	chr6	29340742	29340743	rs9257800	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Pork consumption	335,576 European ancestry individuals	NA	6p22.1	LRRC16A, SCGN, SLC17A4, SLC17A1	rs9257800-?	NR	7E-11		0.0040428	[-0.00326-0.01135] unit decrease	Affymetrix [25921788] (imputed)	N
808	chr6	29340742	29340743	rs9257800	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Oily fish consumption	335,576 European ancestry individuals	NA	6p22.1	LRRC16A, SCGN, SLC17A4, SLC17A1, SLC17A3, SLC17A2	rs9257800-?	NR	7E-11		0.0241753	[0.017-0.031] unit increase	Affymetrix [25921788] (imputed)	N
808	chr6	29341006	29341007	rs7772982	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	OR5V1	rs7772982-C	NR	7E-9		0.0217566	[0.014-0.029] unit decrease	Affymetrix [321016] (imputed)	N
808	chr6	29342774	29342775	rs3749971	33909500	Moll M	2021-04-28	Am J Physiol Lung Cell Mol Physiol	A Systematic Analysis of Protein-altering Exonic Variants in Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease	up to 31,465 European ancestry cases, up to 203,688 European ancestry controls, up to 1,413 African ancestry cases, up to 6,080 African ancestry controls, up to 287 East Asian ancestry cases, up to 7,484 East Asian ancestry controls, up to 61 Hispanic cases, up to 613 Hispanic controls	NA	6p22.1	OR12D3	rs3749971-A	0.12	3E-11		1.11	[1.08 -1.14]	Illumina [at least 109036]	N
808	chr6	29342774	29342775	rs3749971	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p22.1	OR12D3	rs3749971-A		2E-38		0.045	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
808	chr6	29342774	29342775	rs3749971	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	6p22.1	NR	rs3749971-A	NR	3E-9		5.929	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
808	chr6	29343354	29343355	rs9257802	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	OR5V1	rs9257802-T	NR	6E-12		0.026998	[0.019-0.035] unit decrease	Affymetrix [323858] (imputed)	N
808	chr6	29343354	29343355	rs9257802	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	OR5V1	rs9257802-T	NR	2E-11		0.0261971	[0.019-0.034] unit decrease	Affymetrix [127266] (imputed)	N
808	chr6	29343354	29343355	rs9257802	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p22.1	OR5V1	rs9257802-T	NR	7E-9		0.0225586	[0.015-0.03] unit decrease	Affymetrix [323858] (imputed)	N
808	chr6	29343354	29343355	rs9257802	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	6p22.1	NR	rs9257802-?		3E-8	(Anterior corona radiata)			NR [8955960] (imputed)	N
808	chr6	29343354	29343355	rs9257802	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	OR5V1	rs9257802-T	NR	7E-11		6.531	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
808	chr6	29346225	29346226	rs238883	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p22.1	OR5V1	rs238883-G	NR	7E-10		0.0202353	[0.014-0.027] unit decrease	Affymetrix [323123] (imputed)	N
808	chr6	29346225	29346226	rs238883	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Non-Hodgkin's lymphoma	2,400 European ancestry cases, 410,350 European ancestry controls	NA	6p22.1		rs238883-A	NR	3E-7		1.177995	NR	Affymetrix [7846216] (imputed)	N
808	chr6	29346225	29346226	rs238883	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p22.1	OR5V1	rs238883-A	0.6771	1E-7		0.0371	[0.023-0.051] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
808	chr6	29351260	29351261	rs576800986	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	6p22.1	OR5V1	rs576800986-A	0.0016	8E-6		0.994	[0.56-1.43] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
808	chr6	29351783	29351784	rs9378134	23393555	Jensen RA	2013-02-05	PLoS One	Genome-wide association study of retinopathy in individuals without diabetes.	Retinopathy in non-diabetics	19,411 European ancestry individuals	NA	6p22.1	OR12D3	rs9378134-A	0.04	3E-6		0.49	[0.29-0.69] unit increase	Illumina [2675979] (imputed)	N
808	chr6	29355112	29355113	rs238869	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	OR5V1	rs238869-C	NR	4E-8		0.0177413	[0.011-0.024] unit decrease	Affymetrix [323858] (imputed)	N
808	chr6	29355112	29355113	rs238869	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	OR5V1	rs238869-C	NR	2E-8		0.0181435	[0.012-0.024] unit decrease	Affymetrix [127266] (imputed)	N
808	chr6	29355112	29355113	rs238869	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6p22.1	OR5V1	rs238869-C	NR	2E-9		0.0190121	[0.013-0.025] unit decrease	Affymetrix [321114] (imputed)	N
808	chr6	29355112	29355113	rs238869	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	6p22.1	NR	rs238869-C	0.3771	3E-8		1.0341262	[1.02-1.05]	Affymetrix, Illumina [NR] (imputed)	N
808	chr6	29355147	29355148	rs3094549	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	OR5V1	rs3094549-C	NR	9E-18		0.0266542	[0.021-0.033] unit decrease	Affymetrix [321016] (imputed)	N
808	chr6	29355147	29355148	rs3094549	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p22.1	OR5V1	rs3094549-C	NR	3E-10		0.0212798	[0.015-0.028] unit decrease	Affymetrix [323123] (imputed)	N
808	chr6	29355201	29355202	rs3094548	21946350	Soler Artigas M	2011-09-25	Nat Genet	Genome-wide association and large-scale follow up identifies 16 new loci influencing lung function.	Pulmonary function	48,201 European ancestry individuals	46,411 European ancestry individuals	6p22.1	OR12D2	rs3094548-G	NR	1E-7	(FEV1)	0.029	[0.019-0.039] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
808	chr6	29355217	29355219	rs34671475	32227112	Lee MA	2020-03-30	Hum Mol Genet	Common variation at 16p11.2 is associated with glycosuria in pregnancy: Findings from a genome-wide association study in European women.	Glycosuria in pregnancy (offspring genotype effect)	747 European ancestry cases, 2,991 European ancestry controls	NA	6p22.1	NR	rs34671475-C	0.03003544	3E-8		2.608679	[2.269056177-2.948302017]	Illumina [9873828] (imputed)	N
808	chr6	29355276	29355277	rs74294664	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	150,266 East Asian ancestry individuals	NA	6p22.1		rs74294664-A	0.075018	4E-26		0.0570823	[0.046-0.068] unit increase	Illumina [13478778] (imputed)	N
808	chr6	29356330	29356331	rs9257809	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p22.1	NR	rs9257809-G	0.1004	3E-8	(EA)	0.0627	[0.041-0.085] unit decrease	Illumina [~ 11800000] (imputed)	N
808	chr6	29356330	29356331	rs9257809	27527254	Gharahkhani P	2016-08-12	Lancet Oncol	Genome-wide association studies in oesophageal adenocarcinoma and Barrett's oesophagus: a large-scale meta-analysis.	Barrett's esophagus  or Esophageal adenocarcinoma	6,167 European ancestry Barrett's oesophagus cases, 4,112 European ancestry esophageal adenocarcinoma cases, 17,159 European ancestry controls	NA	6p22.1	MHC	rs9257809-A		6E-9		1.23	[1.14-1.31]	Illumina [11951684] (imputed)	N
808	chr6	29356330	29356331	rs9257809	27527254	Gharahkhani P	2016-08-12	Lancet Oncol	Genome-wide association studies in oesophageal adenocarcinoma and Barrett's oesophagus: a large-scale meta-analysis.	Barrett's esophagus	6,167 European ancestry cases, 17,159 European ancestry controls	NA	6p22.1	MHC	rs9257809-A		6E-9		1.2634	[1.18-1.34]	Illumina [11942825] (imputed)	N
808	chr6	29356330	29356331	rs9257809	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p22.1	OR12D3, OR12D2	rs9257809-G	0.233	1E-20				Illumina [118177]	N
808	chr6	29356330	29356331	rs9257809	22961001	Su Z	2012-09-09	Nat Genet	Common variants at the MHC locus and at chromosome 16q24.1 predispose to Barrett's esophagus.	Barrett's esophagus	Up to 1,852 European ancestry cases, 5,172 European ancestry controls	5,986 European ancestry cases, 12,825 European ancestry controls	6p22.1	OR2D12, OR2D13, MHC	rs9257809-A	0.87	4E-9		1.21	[1.13-1.28]	Illumina [521744]	N
808	chr6	29356586	29356587	rs379157	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6p22.1	OR5V1	rs379157-G	NR	5E-8		0.0168887	[0.011-0.023] unit decrease	Affymetrix [321114] (imputed)	N
808	chr6	29356586	29356587	rs379157	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	6p22.1	NR	rs379157-?	NR	2E-9	(MIC-A)	0.426671	[0.29-0.57] unit decrease	Illumina [11901634] (imputed)	N
809	chr6	29365422	29365423	rs2073149	35215271	Almandil NB	2022-01-27	Pharmaceuticals (Basel)	Integration of Transcriptome and Exome Genotyping Identifies Significant Variants with Autism Spectrum Disorder.	Autism spectrum disorder	70 Arab ancestry cases, 132 Arab ancestry controls	NA	6p22.1	NA	rs2073149-A	0.5795	9E-9		0.2367	[0.143-0.3918]	Illumina [243345]	N
809	chr6	29366105	29366106	rs7775217	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Treatment or medication use - levothyroxine sodium (UKB data field 20003_1141191044)	18,688 European ancestry cases, 437,588 European ancestry controls	NA	6p22.1		rs7775217-A	0.007711	3E-13		0.46	[0.33-0.59] unit increase	NR [11842647] (imputed)	N
809	chr6	29372322	29372323	rs429479	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	6p22.1	OR12D2	rs429479-A	0.9041	2E-12		0.0471	[0.034-0.06] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
809	chr6	29372322	29372323	rs429479	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	OR5V1	rs429479-A	NR	5E-15		7.818	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
809	chr6	29376336	29376336	rs199997067	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mumps	31,227 European ancestry cases, 54,153 European ancestry controls	NA	6p22.1	NR	rs199997067-?	NR	5E-7		0.267	[0.16-0.37] unit decrease	Illumina [at least 560000] (imputed)	N
809	chr6	29377666	29377667	rs389931	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure in major depressive disorder-negative individuals	10,701 European ancestry cases, 39,677 European ancestry controls	NA	6p22.1	NR	rs389931-T	0.9064421	7E-6		1.1273957	[1.07-1.18]	Affymetrix [7791636] (imputed)	N
809	chr6	29386975	29386976	rs202217993	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Gynecologic disease	7,975 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs202217993-?		1E-8		1.18	[1.11-1.25]	Illumina [7645193] (imputed)	N
809	chr6	29386975	29386976	rs202217993	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Gynecologic disease	7,315 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs202217993-?		2E-9				Illumina [7645193] (imputed)	N
809	chr6	29387002	29387003	rs16894878	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	6p22.1	OR12D1P, OR11A1	rs16894878-A	0.001	1E-6		34.08	[3.52-329.69]	Illumina [1556551]	N
809	chr6	29396873	29396874	rs3128851	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	OR5V1, OR11A1	rs3128851-T	NR	9E-12		0.0207103	[0.015-0.027] unit decrease	Affymetrix [321016] (imputed)	N
809	chr6	29398937	29398938	rs3117191	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	6p22.1	Intergenic	rs3117191-T	NR	2E-6		0.022413	[0.013-0.032] unit decrease	Illumina [13520550] (imputed)	N
809	chr6	29405887	29405888	rs55740552	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p22.1	NR	rs55740552-?	NR	1E-10		0.1637	[0.11-0.21] unit decrease	Illumina [at least 560000] (imputed)	N
809	chr6	29408089	29408090	rs17177632	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	6p22.1		rs17177632-?	NR	5E-8				Affymetrix [NR] (imputed)	N
809	chr6	29408089	29408090	rs17177632	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p22.1		rs17177632-A	0.988	2E-8				Affymetrix [10369434] (imputed)	N
809	chr6	29413002	29413003	rs2023463	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in diabetes	70,762 European ancestry individuals, 20,967 African American individuals	NA	6p22.1	6M1-18	rs2023463-T	0.092	1E-11		1.01	[0.72-1.3] unit decrease	Affymetrix [NR] (imputed)	N
809	chr6	29415463	29415464	rs2523443	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p22.1	NR	rs2523443-A	0.1188	1E-12		0.013	[0.0095-0.0165] unit decrease	NR [7666894] (imputed)	N
809	chr6	29432172	29432173	rs2143668	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	6p22.1	OR2H1	rs2143668-A	0.8962	1E-7	(EA)	0.0033	[0.0021-0.0045] unit increase	Affymetrix [NR] (imputed)	N
809	chr6	29432172	29432173	rs2143668	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	6p22.1	OR2H1	rs2143668-A	0.896	1E-9		0.0033	[0.0021-0.0045] unit increase	Affymetrix [NR] (imputed)	N
809	chr6	29434413	29434414	rs4713226	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	UBDP1	rs4713226-A	NR	5E-10		0.0303439	[0.021-0.04] unit decrease	Affymetrix [321016] (imputed)	N
809	chr6	29434413	29434414	rs4713226	22610502	Kennedy RB	2012-05-19	Hum Genet	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IFN-alpha)	Up to 512 European ancestry individuals, up to 199 African American individuals	NA	6p22.1	OR2H1	rs4713226-A		2E-8	(AA)			Illumina [NR]	N
809	chr6	29442974	29442975	rs77454196	33002439	Jin G	2020-10-01	Lancet Oncol	Genetic risk, incident gastric cancer, and healthy lifestyle: a meta-analysis of genome-wide association studies and prospective cohort study.	Gastric cancer	10,254 Han Chinese ancestry cases, 10,914 Han Chinese ancestry controls	NA	6p22.1	NR	rs77454196-A	0.05	3E-6		0.78	NR	Affymetrix, Illumina [6957974] (imputed)	N
809	chr6	29445701	29445702	rs72500877	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	349,856 European ancestry individuals, 91,908 East Asian ancestry individuals	NA	6p22.1		rs72500877-T	NR	2E-9		0.0296	[0.02-0.039] unit increase	Affymetrix, Illumina [20529536] (imputed)	N
809	chr6	29458240	29458241	rs1233493	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs1233493-?		1E-8	(Superior corona radiata)			NR [8955960] (imputed)	N
809	chr6	29458240	29458241	rs1233493	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs1233493-?		3E-9	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
809	chr6	29458240	29458241	rs1233493	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in non-diabetics	152,624 European ancestry individuals, 36,369 African American individuals	NA	6p22.1	MAS1L	rs1233493-A	0.89	9E-9		0.481	[0.32-0.65] unit increase	Affymetrix [NR] (imputed)	N
809	chr6	29461729	29461730	rs1233491	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p22.1	MAS1L, LOC729653	rs1233491-C	0.23	1E-20				Illumina [118177]	N
809	chr6	29461729	29461730	rs1233491	25827949	Kunz M	2015-05-04	Exp Dermatol	Genome-wide association study identifies new susceptibility loci for cutaneous lupus erythematosus.	Cutaneous lupus erythematosus	151 European ancestry cases, 1,288 European ancestry controls	219 European ancestry cases, 262 European ancestry controls	6p22.1	MAS1L	rs1233491-C	0.088	8E-10		2.2	[1.58-3.08]	Affymetrix [906600]	N
809	chr6	29470207	29470208	rs1233485	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p22.1		rs1233485-T	0.731	7E-12				Affymetrix [10369434] (imputed)	N
809	chr6	29470984	29470985	rs3131019	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	6p22.1		rs3131019-?	NR	5E-8				Affymetrix [NR] (imputed)	N
809	chr6	29477413	29477414	rs1233480	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p22.1	NR	rs1233480-T	0.1095	5E-8	(EA)	0.0586	[0.037-0.08] unit decrease	Illumina [~ 11800000] (imputed)	N
809	chr6	29480223	29480224	rs385816	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p22.1	NR	rs385816-?	NR	5E-7		0.0742	[0.045-0.103] unit increase	Illumina [at least 560000] (imputed)	N
809	chr6	29487281	29487282	rs2523430	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p22.1		rs2523430-G	0.513	3E-9				Affymetrix [10369434] (imputed)	N
809	chr6	29487967	29487968	rs12210150	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	153,512 East Asian ancestry individuals	NA	6p22.1		rs12210150-T	0.038389	1E-12		0.0584816	[0.042-0.075] unit increase	Illumina [13479135] (imputed)	N
810	chr6	29510629	29510630	rs362538	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	6p22.1		rs362538-G	0.902	2E-109		0.4	[-0.44--0.36] % decrease	Affymetrix [NR] (imputed)	N
810	chr6	29510629	29510630	rs362538	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular hemoglobin	20,714 Amish, White ancestry individuals, 447 Asian ancestry individuals, 11,246 Black individuals, 13,834 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	6p22.1		rs362538-C	NR	3E-10		0.2	[0.14-0.26] unit increase	Illumina [94681438]	N
810	chr6	29515801	29515802	rs3094575	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	OR2I1P	rs3094575-T	NR	2E-8		0.0185304	[0.012-0.025] unit decrease	Affymetrix [321016] (imputed)	N
810	chr6	29519847	29519848	rs453658	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	121,047 East Asian ancestry individuals	NA	6p22.1	NR	rs453658-G	0.306783	4E-12		0.030549	[0.022-0.039] SD units decrease	Affymetrix, Illumina [16286195] (imputed)	N
810	chr6	29520876	29520877	rs16895057	23456168	Hao Y	2013-03-03	Hum Genet	Genome-wide association study in Han Chinese identifies three novel loci for human height.	Height	6,534 Han Chinese ancestry individuals	1,881 Han Chinese ancestry individuals from 637 families	6p22.1	OR2I1P	rs16895057-T	0.95	3E-6		0.153	[0.088-0.218] unit increase	Affymetrix [1532051] (imputed)	N
810	chr6	29521318	29521319	rs11724	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	6p22.1		rs11724-G	0.692447	2E-8		0.0220867	[0.014-0.03] unit increase	Illumina [13476299] (imputed)	N
810	chr6	29523675	29523676	rs8337	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p22.1	UBD	rs8337-C		1E-19		0.022	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
810	chr6	29526376	29526377	rs11970475	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	6p22.1	UBD	rs11970475-A	0.19	2E-24		0.07	[0.054-0.086] unit increase	Affymetrix, Illumina [2704730] (imputed)	N
810	chr6	29530943	29530944	rs422878	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	GABBR1	rs422878-T	NR	1E-8		0.0205792	[0.014-0.028] unit decrease	Affymetrix [321016] (imputed)	N
810	chr6	29530943	29530944	rs422878	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	6p22.1	UBD, OR2H2	rs422878-C	0.81	1E-8		5.72	z-score increase	Affymetrix [4311822] (imputed)	N
810	chr6	29530973	29530974	rs115070292	27922604	Yu H	2016-12-06	Mol Psychiatry	Common variants on 2p16.1, 6p22.1 and 10q24.32 are associated with schizophrenia in Han Chinese population.	Schizophrenia	4,384 Han Chinese ancestry cases and 5,770 Han Chinese ancestry controls	4,339 Han Chinese ancestry cases and 7,043 Han Chinese ancestry controls	6p22.1	GABBR1	rs115070292-?		5E-10		1.3	[1.22-1.38]	Illumina [at least 473583] (imputed)	N
810	chr6	29534614	29534615	rs413082	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	GABBR1	rs413082-A	NR	3E-8		0.0199613	[0.013-0.027] unit decrease	Affymetrix [321016] (imputed)	N
810	chr6	29538208	29538209	rs142818680	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mumps	31,227 European ancestry cases, 54,153 European ancestry controls	NA	6p22.1	NR	rs142818680-?	NR	7E-12		0.5892	[0.42-0.76] unit decrease	Illumina [at least 560000] (imputed)	N
810	chr6	29539764	29539765	rs3025652	31272903	Sunadome H	2019-07-01	Allergol Int	Correlation between eosinophil count, its genetic background and body mass index: The Nagahama Study.	Eosinophil counts	4,650 East Asian ancestry individuals	NA	6p22.1	NR	rs3025652-A	0.23	4E-7		0.1237	NR unit increase	Illumina [103680] (imputed)	N
810	chr6	29546798	29546799	rs1233396	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in HDL	115,082 European ancestry individuals	NA	6p22.1		rs1233396-G	0.861673	7E-10		0.0329165	[0.022-0.043] unit increase	NR [11722792] (imputed)	N
810	chr6	29546798	29546799	rs1233396	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium HDL	115,082 European ancestry individuals	NA	6p22.1		rs1233396-G	0.861673	3E-9		0.0327783	[0.022-0.044] unit increase	NR [11722792] (imputed)	N
810	chr6	29548088	29548089	rs926552	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	6p22.1	NA	rs926552-G		4E-10		0.0184243	[0.013-0.024] unit increase	Illumina [13288253] (imputed)	N
810	chr6	29548088	29548089	rs926552	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Major depressive disorder (lifetime)	16,301 British ancestry cases, 50,870 British ancestry controls	NA	6p22.1	NR	rs926552-G	0.86	4E-8		1.1074197	[1.07-1.14]	NR [5276842] (imputed)	N
810	chr6	29548088	29548089	rs926552	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking initiation (ever regular vs never regular)	up to 433,216 European ancestry individuals	NA	6p22.1	SNORD32B	rs926552-A	0.134	1E-8		0.0181	[0.012-0.024] unit decrease	Illumina [~ 250000] (imputed)	N
810	chr6	29548088	29548089	rs926552	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Diastolic blood pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	154,543 European ancestry individuals, 26,183 South Asian ancestry individuals	6p22.1	SNORD32B	rs926552-T	0.111	7E-8		0.26	[0.16-0.36] unit decrease	Illumina [247039]	N
810	chr6	29549652	29549653	rs1233393	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p22.1	NR	rs1233393-G	0.12	3E-7		1.13	[1.08-1.18]	Affymetrix [9886854] (imputed)	N
810	chr6	29549652	29549653	rs1233393	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p22.1	NR	rs1233393-G	0.12	2E-11			[NR]	Affymetrix [9886854] (imputed)	N
810	chr6	29549652	29549653	rs1233393	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p22.1	NR	rs1233393-G	0.12	2E-9		1.11	[1.07-1.15]	Affymetrix [9886854] (imputed)	N
810	chr6	29549652	29549653	rs1233393	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p22.1	NR	rs1233393-G	0.12	3E-11			[NR]	Affymetrix [9886854] (imputed)	N
810	chr6	29549652	29549653	rs1233393	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in non-current smokers	16,488 European ancestry cases, 169,688 European ancestry controls	NA	6p22.1	NR	rs1233393-G	0.12	2E-9		1.11	[1.07-1.15]	Affymetrix [9886854] (imputed)	N
810	chr6	29549652	29549653	rs1233393	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in never smokers	8,631 European ancestry cases, 120,544 European ancestry controls	NA	6p22.1	NR	rs1233393-G	0.12	2E-7		1.13	[1.08-1.18]	Affymetrix [9886854] (imputed)	N
810	chr6	29549652	29549653	rs1233393	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in ever smokers	12,446 European ancestry cases, 59,145 European ancestry controls	NA	6p22.1	NR	rs1233393-G	0.12	3E-6		1.11	[1.06-1.16]	Affymetrix [9886854] (imputed)	N
810	chr6	29549652	29549653	rs1233393	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p22.1	NR	rs1233393-G	0.1223	8E-13		0.0129	[0.0094-0.0164] unit decrease	NR [7666894] (imputed)	N
810	chr6	29551415	29551416	rs12524535	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Experiencing mood swings	373,733 European ancestry individuals	NA	6p22.1	TRIM27	rs12524535-A	0.0690112	8E-9		5.77	z score decrease	NR [10847151] (imputed)	N
810	chr6	29555680	29555681	rs3095275	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	6p22.1	OR2H2	rs3095275-A	0.1998	9E-21		0.0223	[0.018-0.027] unit increase	Affymetrix [18391927] (imputed)	N
810	chr6	29555777	29555778	rs2235698	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6p22.1		rs2235698-?	NR	2E-7		0.935071	[0.91-0.96]	NR [685523]	N
810	chr6	29555777	29555778	rs2235698	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	6p22.1	OR2H2	rs2235698-G	0.23	2E-10		6.36	z-score increase	Affymetrix [4312306] (imputed)	N
810	chr6	29560479	29560480	rs3095274	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p22.1		rs3095274-A	0.295	1E-10				Affymetrix [10369434] (imputed)	N
810	chr6	29563066	29563067	rs17508548	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	6p22.1	NR	rs17508548-?	NR	1E-8		0.02016	[0.013-0.027] unit increase	Affymetrix [10847151] (imputed)	N
810	chr6	29564761	29564762	rs56020557	28440896	Yin X	2017-04-25	Am J Med Genet B Neuropsychiatr Genet	Genome-wide meta-analysis identifies a novel susceptibility signal at CACNA2D3 for nicotine dependence.	Nicotine dependence	7,297 European ancestry cases, 5,577 European ancestry controls, 918 European ancestry whole genome sequenced cases, 921 European ancestry whole genome sequenced controls, African American cases, 1,500 African American controls	NA	6p22.1	GABBR1	rs56020557-T		5E-6	(EA)	0.05	[0.03-0.07] unit increase	Illumina [at least 3251541] (imputed)	N
810	chr6	29565372	29565373	rs28893517	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	6p22.1	NR	rs28893517-G	NR	5E-10		0.02848	[0.019-0.037] unit increase	Affymetrix [10847151] (imputed)	N
810	chr6	29566081	29566082	rs28986304	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	6p22.1	NR	rs28986304-T	NR	3E-9		5.932	z score decrease	Affymetrix [10847151] (imputed)	N
810	chr6	29566081	29566082	rs28986304	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	6p22.1	TRIM27	rs28986304-T	0.126444	8E-10		6.14	z score decrease	NR [10847151] (imputed)	N
810	chr6	29567314	29567315	rs28986306	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Depression	at least 5,919 European ancestry cases, at least 130,691 European ancestry controls	634,037 European ancestry cases, 1,308,690 European ancestry controls	6p22.1	GABBR1	rs28986306-C	0.0507	2E-9		0.02608803	[0.016-0.036] unit decrease	NR [9417325] (imputed)	N
810	chr6	29569044	29569045	rs362517	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	GABBR1	rs362517-A	NR	1E-10		0.0398451	[0.028-0.052] unit decrease	Affymetrix [321016] (imputed)	N
810	chr6	29570315	29570316	rs3025642	30172743	Liang X	2018-08-30	Bone	Assessing the genetic correlations between early growth parameters and bone mineral density: A polygenic risk score analysis.	Ulna and radius bone mineral density	2,286 European ancestry individuals	NA	6p22.1	GABBR1	rs3025642-?	NR	8E-7				Affymetrix [753382]	N
810	chr6	29570840	29570841	rs2267633	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	6p22.1	intergenic	rs2267633-A	0.87355	1E-9		6.079	z score decrease	Illumina [18485882] (imputed)	N
810	chr6	29575404	29575405	rs740883	30804558	Grove J	2019-02-25	Nat Genet	Identification of common genetic risk variants for autism spectrum disorder.	Autism spectrum disorder	18,381 European ancestry cases, 27,969 European ancestry controls	2,119 European ancestry cases, 142,379 European ancestry controls	6p22.1	Intergenic	rs740883-T	0.088	1E-6		1.1160713	[NR]	Illumina [9112387] (imputed)	N
810	chr6	29579990	29579991	rs41286287	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	6p22.1	NR	rs41286287-A	NR	2E-8		5.59	z score increase	Affymetrix [10847151] (imputed)	N
810	chr6	29579990	29579991	rs41286287	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling miserable	376,097 European ancestry individuals	NA	6p22.1	TRIM27	rs41286287-A	0.0707157	1E-8		5.72	z score increase	NR [10847151] (imputed)	N
810	chr6	29580435	29580436	rs29253	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	GABBR1	rs29253-G	NR	3E-12		0.0329464	[0.024-0.042] unit decrease	Affymetrix [321016] (imputed)	N
810	chr6	29594264	29594265	rs41291770	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	145,648 East Asian ancestry individuals	NA	6p22.1	NR	rs41291770-T	0.792877	4E-11		0.030339	[0.021-0.039] SD units decrease	Affymetrix, Illumina [16710488] (imputed)	N
810	chr6	29596241	29596242	rs143229677	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	6p22.1	GABBR1	rs143229677-A	0.0035	3E-13		0.2309051	[0.17-0.29] unit increase	Affymetrix [~ 2500000] (imputed)	N
810	chr6	29601937	29601938	rs62392942	28440896	Yin X	2017-04-25	Am J Med Genet B Neuropsychiatr Genet	Genome-wide meta-analysis identifies a novel susceptibility signal at CACNA2D3 for nicotine dependence.	Nicotine dependence	7,297 European ancestry cases, 5,577 European ancestry controls, 918 European ancestry whole genome sequenced cases, 921 European ancestry whole genome sequenced controls, African American cases, 1,500 African American controls	NA	6p22.1	GABBR1	rs62392942-T		1E-6		0.06	[0.04-0.08] unit decrease	Illumina [at least 3251541] (imputed)	N
810	chr6	29603511	29603512	rs111508444	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p22.1	NR	rs111508444-A	0.945	2E-19		1.522	[1.43-1.61]	Illumina [11270530] (imputed)	N
810	chr6	29607045	29607046	rs3095267	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine without aura	7,107 European ancestry cases, 69,427 European ancestry controls	NA	6p22.1	intergenic	rs3095267-?	0.81	9E-6		1.12	[1.06-1.18]	Affymetrix, Illumina [~ 2300000] (imputed)	N
810	chr6	29607100	29607101	rs3131856	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical thickness (MOSTest)	26,502 European ancestry individuals	NA	6p22.1	RALGPS2, ANGPTL1	rs3131856-?		2E-10				NR [7428630] (imputed)	N
810	chr6	29607100	29607101	rs3131856	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	6p22.1	LRRC16A, SCGN, SLC17A4, SLC17A1, SLC17A3, SLC17A2, TRIM38, HIST1H1A, HIST1H3A, HIST1H4A, HIST1H4B, HIST1H3B, HIST1H2AB, HIST1H2BB, HIST1H3C, HIST1H1C, HFE, HIST1H2BC, HIST1H2AC, HIST1H2BD, HIST1H2BE, HIST1H4D, HIST1H3D, HIST1H2AD, HIST1H2BF, HIST1H4E, HIST1H3G, HIST1H2BI, BTN3A2, BTN2A2, BTN3A1, BTN3A3, BTN2A1, BTN1A1, HMGN4, ABT1, ZNF322, HIST1H2BJ, HIST1H2AG, HIST1H2BK, HIST1H4I, HIST1H2AH, POM121L2, ZNF391, ZNF184, HIST1H2BL, HIST1H2AI, HIST1H3H, HIST1H2AJ, HIST1H2BM, HIST1H4J, HIST1H4K, HIST1H2AK, HIST1H2BN, HIST1H2AL, HIST1H1B, HIST1H3I, HIST1H4L, HIST1H3J, HIST1H2AM, HIST1H2BO, OR2B2, OR2B6, ZNF165, ZSCAN16, ZKSCAN8, ZSCAN9, ZKSCAN4, NKAPL, PGBD1, ZSCAN31, ZKSCAN3, ZSCAN12, ZSCAN23, GPX6, SCAND3, TRIM27, C6orf100, ZNF311, OR2W1, OR2B3, OR2J1, OR2J3, OR2J2, OR14J1, OR5V1, OR12D3, OR12D2, OR11A1, OR10C1, OR2H1, MAS1L, UBD, GABBR1, OR2H2	rs3131856-?		7E-16				NR [7428630] (imputed)	N
810	chr6	29607100	29607101	rs3131856	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p22.1	NR	rs3131856-?	NR	1E-7		0.1953	[0.12-0.27] unit decrease	Illumina [at least 560000] (imputed)	N
810	chr6	29608184	29608184	rs75140056	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Platelet count	8,850 African American individuals, 18,949 Hispanic/Latino individuals, 541 Asian ancestry individuals, 603 Native American ancestry individuals, 385 individuals	NA	6p22.1	NR	rs75140056-?	NR	6E-6		2.374875	[1.35-3.4] unit increase	Illumina [30743395] (imputed)	N
810	chr6	29608184	29608184	rs75140056	26805783	Schick UM	2016-01-21	Am J Hum Genet	Genome-wide Association Study of Platelet Count Identifies Ancestry-Specific Loci in Hispanic/Latino Americans.	Platelet count	12,491 Hispanic/Latin American individuals	7,170 Hispanic/Latin American individuals	6p22.1	MOG, GABBR1	rs75140056-C	0.39	1E-9		0.151	[0.10-0.20] unit decrease	Illumina [2232944] (imputed)	N
810	chr6	29609694	29609695	rs9257927	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs9257927-?		1E-8		1.66	[1.39-1.97]	Illumina [7645193] (imputed)	N
810	chr6	29611430	29611431	rs29232	19664746	Tse KP	2009-08-05	Am J Hum Genet	Genome-wide association study reveals multiple nasopharyngeal carcinoma-associated loci within the HLA region at chromosome 6p21.3.	Nasopharyngeal carcinoma	277 Han Chinese ancestry cases, 285 Han Chinese ancestry controls	635 Han Chinese ancestry cases, 1,640 Han Chinese ancestry controls	6p22.1	GABBR1	rs29232-A	0.46	9E-17		1.67	[1.48-1.88]	Illumina [480365]	N
810	chr6	29611780	29611781	rs3117318	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fish- and plant-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	6p22.1	LRRC16A, SCGN, SLC17A4, SLC17A1, SLC17A3, SLC17A2, TRIM38, HIST1H1A, HIST1H3A, HIST1H4A, HIST1H4B, HIST1H3B, HIST1H2AB, HIST1H2BB, HIST1H3C, HIST1H1C, HFE, HIST1H4C, HIST1H1T, HIST1H2BC, HIST1H2AC, HIST1H2BD, HIST1H2BE, HIST1H4D, HIST1H3D, HIST1H2AD, HIST1H2BF, HIST1H4E, HIST1H3G, HIST1H2BI, BTN3A2, BTN2A2, BTN3A1, BTN3A3, BTN2A1, BTN1A1, HMGN4, ABT1, ZNF322, HIST1H2BJ, HIST1H2AG, HIST1H2BK, HIST1H4I, HIST1H2AH, PRSS16, POM121L2, ZNF391, ZNF184, HIST1H2BL, HIST1H2AI, HIST1H3H, HIST1H2AJ, HIST1H2BM, HIST1H4J, HIST1H4K, HIST1H2AK, HIST1H2BN, HIST1H2AL, HIST1H1B, HIST1H3I, HIST1H4L, HIST1H3J, HIST1H2AM, HIST1H2BO, OR2B2, OR2B6, ZNF165, ZSCAN16, ZKSCAN8, ZSCAN9, ZKSCAN4, NKAPL, PGBD1, ZSCAN31, ZKSCAN3, ZSCAN12, ZSCAN23, GPX6, SCAND3, TRIM27, C6orf100, ZNF311, OR2W1, OR2B3, OR2J1, OR2J3, OR2J2, OR14J1, OR5V1, OR12D3, OR12D2, OR11A1, OR10C1, OR2H1, MAS1L, UBD, GABBR1, OR2H2	rs3117318-?	NR	7E-9		0.0168393	[0.011-0.023] unit increase	Affymetrix [25921788] (imputed)	N
810	chr6	29611884	29611885	rs3131854	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p22.1		rs3131854-T	0.213	6E-18				Affymetrix [10369434] (imputed)	N
810	chr6	29618954	29618955	rs188289856	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p22.1	NR	rs188289856-?	NR	6E-8		0.2325	[0.15-0.32] unit increase	Illumina [at least 560000] (imputed)	N
810	chr6	29622219	29622220	rs1233367	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6p22.1	MOG	rs1233367-G	NR	3E-8		0.0181448	[0.012-0.025] unit decrease	Affymetrix [321114] (imputed)	N
811	chr6	29623314	29623315	rs9468569	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p22.1	MOG, ZFP57, ZDHHC20P1	rs9468569-A	0.01203611	1E-16	(EA, Alpha-2-macroglobulin receptor-associated protein)	1.631	[1.25-2.01] unit increase	Affymetrix [509946]	N
811	chr6	29624111	29624112	rs29234	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	6p22.1	Intergenic	rs29234-?	NR	2E-8		2.219	[NR]	Affymetrix [492217] (imputed)	N
811	chr6	29626320	29626321	rs2252711	23284291	Hancock DB	2012-12-20	PLoS Genet	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (smoking interaction)	50,047 European ancestry individuals	NA	6p22.1	MOG	rs2252711-T	NR	4E-7	(FEV1/FVC, Ever-smoking)			NR [~ 2500000] (imputed)	N
811	chr6	29626948	29626949	rs16895223	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	MOG	rs16895223-G	NR	4E-10		0.0263599	[0.018-0.035] unit decrease	Affymetrix [321016] (imputed)	N
811	chr6	29628158	29628159	rs182971160	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p22.1	NR	rs182971160-?	NR	2E-7		0.3024	[0.19-0.42] unit increase	Illumina [at least 560000] (imputed)	N
811	chr6	29634011	29634012	rs3130253	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p22.1	MOG	rs3130253-A		1E-44		0.053	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
811	chr6	29644336	29644337	rs28367493	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p22.1		rs28367493-?	NR	2E-11		0.0217788	[0.016-0.028] unit decrease	Affymetrix [20259828] (imputed)	N
811	chr6	29645548	29645549	rs75834742	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	NR	rs75834742-?	NR	6E-7		4.996	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
811	chr6	29646164	29646165	rs396660	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	6p22.1	NR	rs396660-?	NR	3E-10	(MIC-A)	0.504823	[0.35-0.66] unit increase	Illumina [11901634] (imputed)	N
811	chr6	29646864	29646865	rs9257953	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	91,908 East Asian ancestry individuals	NA	6p22.1		rs9257953-A	0.223075	3E-9		0.0321111	[0.022-0.043] unit increase	Illumina [13469940] (imputed)	N
811	chr6	29647714	29647715	rs17369215	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	6p22.1	Intergenic	rs17369215-T	0.2278	2E-11	(MTAG)	0.0183	[0.013-0.024] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
811	chr6	29648119	29648120	rs17184549	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	6p22.1	Intergenic	rs17184549-A	0.2165	1E-8	(MTAG)	0.0124	[0.0081-0.0167] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
811	chr6	29648119	29648120	rs17184549	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	6p22.1	Intergenic	rs17184549-A	0.2168	4E-11	(MTAG)	0.0133	[0.0094-0.0172] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
811	chr6	29649546	29649547	rs385492	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Uterine fibroids (MTAG)	5,236 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs385492-?		5E-6		1.0309278	[1.02-1.04]	Illumina [7645193] (imputed)	N
811	chr6	29649546	29649547	rs385492	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p22.1	HCG4, HCG4B, HCG8, HCG9, HLA-A, HLA-F, HLA-F-AS1, HLA-G, HLA-H, HLA-J, IFITM4P, LOC554223, MOG, PPP1R11, RNF39, ZFP57, ZNRD1, ZNRD1-AS1	rs385492-T		4E-9		1.06	[1.04-1.08]	Affymetrix, Illumina [NR]	N
811	chr6	29649546	29649547	rs385492	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	6p22.1	NR	rs385492-T	NR	1E-8		1.06	[NR]	Illumina [7158791] (imputed)	N
811	chr6	29652198	29652199	rs3117292	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	ZFP57	rs3117292-G	NR	4E-12		0.0204333	[0.015-0.026] unit decrease	Affymetrix [321016] (imputed)	N
811	chr6	29652252	29652253	rs9257985	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Gynecologic disease (multivariate analysis)	up to 7,975 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs9257985-?		2E-8	(uterine fibroid, uterine cervical cancer)			Illumina [7645193] (imputed)	N
811	chr6	29660815	29660816	rs3116813	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p22.1	NR	rs3116813-A	0.1026	6E-7	(EA)	0.0553	[0.034-0.077] unit decrease	Illumina [~ 11800000] (imputed)	N
811	chr6	29660939	29660940	rs3116812	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8 on Central Memory CD8+ T cell	2,910 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p22.1		rs3116812-G	0.2977	1E-8		0.1871	[0.12-0.25] unit decrease	Illumina [17945467] (imputed)	N
811	chr6	29663888	29663889	rs3131888	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	1,505 Ashkenazi Jewish founder cases, 2,553 Ashkenazi Jewish founder controls	NA	6p22.1	NR	rs3131888-C	NR	7E-6		1.2820514	[NR]	Illumina [up to 9792010] (imputed)	N
811	chr6	29665360	29665361	rs7764829	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p22.1		rs7764829-A	0.612	4E-25				Affymetrix [10369434] (imputed)	N
811	chr6	29665710	29665711	rs9278250	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6p22.1		rs9278250-C	0.247045	7E-12		0.019422151	[0.014-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
811	chr6	29668943	29668943	rs143539749	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	ZDHHC20P1	rs143539749-ATATATATTC	NR	3E-9		0.0217332	[0.015-0.029] unit decrease	Affymetrix [323858] (imputed)	N
811	chr6	29668943	29668943	rs143539749	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	ZDHHC20P1	rs143539749-ATATATATTC	NR	6E-9		0.0213619	[0.014-0.029] unit decrease	Affymetrix [127266] (imputed)	N
811	chr6	29668993	29668994	rs3116800	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	ZDHHC20P1	rs3116800-T	NR	2E-8		0.01833	[0.012-0.025] unit increase	Affymetrix [321016] (imputed)	N
811	chr6	29670260	29670261	rs3129055	19664746	Tse KP	2009-08-05	Am J Hum Genet	Genome-wide association study reveals multiple nasopharyngeal carcinoma-associated loci within the HLA region at chromosome 6p21.3.	Nasopharyngeal carcinoma	277 Han Chinese ancestry cases, 285 Han Chinese ancestry controls	635 Han Chinese ancestry cases, 1,640 Han Chinese ancestry controls	6p22.1	HLA-F	rs3129055-G	0.31	7E-11		1.51	[1.34-1.71]	Illumina [480365]	N
811	chr6	29671029	29671030	rs9258116	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p22.1		rs9258116-T	0.714	3E-9				Affymetrix [10369434] (imputed)	N
811	chr6	29671066	29671067	rs113510833	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	6p22.1	HLA-F, ZFP57	rs113510833-T	0.10919500000000004	3E-8		0.028025	[0.018-0.038] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
811	chr6	29672074	29672074	rs11276222	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	6p22.1	ZDHHC20P1	rs11276222-A	NR	5E-8		0.0161712	[0.01-0.022] unit increase	Affymetrix [321788] (imputed)	N
811	chr6	29680020	29680021	rs1611371	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p22.1		rs1611371-C	0.228	2E-20				Affymetrix [10369434] (imputed)	N
811	chr6	29688500	29688501	rs2517910	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	HLA-F	rs2517910-A	NR	3E-14		0.0214991	[0.016-0.027] unit increase	Affymetrix [321016] (imputed)	N
811	chr6	29690538	29690539	rs9258177	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	HLA-F	rs9258177-A	NR	3E-10		0.0194677	[0.013-0.026] unit decrease	Affymetrix [321016] (imputed)	N
811	chr6	29690668	29690669	rs9258183	33002439	Jin G	2020-10-01	Lancet Oncol	Genetic risk, incident gastric cancer, and healthy lifestyle: a meta-analysis of genome-wide association studies and prospective cohort study.	Gastric cancer	10,254 Han Chinese ancestry cases, 10,914 Han Chinese ancestry controls	NA	6p22.1	NR	rs9258183-A	0.47	1E-5		1.1	NR	Affymetrix, Illumina [6957974] (imputed)	N
811	chr6	29691018	29691019	rs1362126	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal cancer	978 Austrian ancestry colorectal cancer cases, 636 Austrian ancestry advanced colorectal adenoma cases, 4,294 European ancestry controls	NA	6p22.1	Intergenic	rs1362126-?		1E-7		1.3338668	[NR]	Affymetrix [492217] (imputed)	N
811	chr6	29691018	29691019	rs1362126	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal cancer	978 Austrian ancestry cases, 4,294 European ancestry controls	NA	6p22.1	Intergenic	rs1362126-?		3E-7		1.3908206	[NR]	Affymetrix [492217] (imputed)	N
811	chr6	29691856	29691857	rs2072895	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	6p22.1	Intergenic	rs2072895-C	0.5626	5E-9		0.0168	[0.011-0.022] unit increase	Affymetrix, Illumina [10100000] (imputed)	N
811	chr6	29692621	29692622	rs2072899	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p22.1	NR	rs2072899-?	NR	7E-18		0.1076	[0.083-0.132] unit increase	Illumina [at least 560000] (imputed)	N
811	chr6	29695501	29695502	rs1628578	34050765	Zhang L	2021-05-29	J Clin Endocrinol Metab	Joint genome-wide association analyses identified 49 novel loci for age at natural menopause.	Age at menopause	181,219 European ancestry individuals, 43,861 East Asian ancestry individuals	NA	6p22.1		rs1628578-A	0.71	3E-13		0.1	unit increase	Illumina [2093892] (imputed)	N
811	chr6	29695501	29695502	rs1628578	34050765	Zhang L	2021-05-29	J Clin Endocrinol Metab	Joint genome-wide association analyses identified 49 novel loci for age at natural menopause.	Age at menopause	181,219 European ancestry individuals	NA	6p22.1		rs1628578-A	0.71	2E-11		0.1	unit increase	Illumina [2398641] (imputed)	N
811	chr6	29695853	29695854	rs2735059	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	6p22.1	NR	rs2735059-A	0.43	3E-13		0.0136	[0.0099-0.0173] unit decrease	NR [NR]	N
811	chr6	29696656	29696657	rs885946	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	6p22.1	NR	rs885946-T	0.186879	3E-10		0.05062379	[0.035-0.066] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
811	chr6	29697313	29697314	rs60581484	33574277	Kawai Y	2021-02-11	NPJ Genom Med	Mapping of susceptible variants for cold medicine-related Stevens-Johnson syndrome by whole-genome resequencing.	Cold medicine-related Stevens-Johnson syndrome/toxic epidermal necrolysis (SJS/TEN) with severe ocular complications	133 Japanese ancestry cases, 418 Japanese ancestry controls	NA	6p22.1		rs60581484-A	0.218	2E-13		4.204		Illumina [7608150]	N
811	chr6	29700182	29700183	rs1610601	30552173	Aterido A	2018-12-14	Ann Rheum Dis	Genetic variation at the glycosaminoglycan metabolism pathway contributes to the risk of psoriatic arthritis but not psoriasis.	Psoriatic arthritis	744 Spanish ancestry cases, 1,454 Spanish ancestry controls	1,430 cases, 1,417 controls	6p22.1	NR	rs1610601-?	NR	6E-9		5.81	[NR] z-score increase	Illumina [1387382] (imputed)	N
811	chr6	29700614	29700615	rs2735054	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p22.1	NR	rs2735054-G	0.413	3E-11	(IFNAR2_of_CD20p)			Illumina [5084123] (imputed)	N
811	chr6	29705658	29705659	rs2523393	19525953	De Jager PL	2009-06-14	Nat Genet	Meta-analysis of genome scans and replication identify CD6, IRF8 and TNFRSF1A as new multiple sclerosis susceptibility loci.	Multiple sclerosis	2,624 European ancestry cases, 7,220 European ancestry controls	2,215 European ancestry cases, 2,116 European ancestry controls	6p22.1	HLA-B	rs2523393-A	0.59	1E-17		1.28	[1.18-1.39]	Affymetrix, Illumina [~ 2560000] (imputed)	N
811	chr6	29707266	29707267	rs1633096	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	HLA-F-AS1	rs1633096-T	NR	2E-10		0.0225267	[0.016-0.029] unit decrease	Affymetrix [323858] (imputed)	N
811	chr6	29707266	29707267	rs1633096	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	HLA-F-AS1	rs1633096-T	NR	3E-10		0.0224137	[0.015-0.029] unit decrease	Affymetrix [127266] (imputed)	N
811	chr6	29707266	29707267	rs1633096	29196614	Sud A	2017-12-01	Nat Commun	Genome-wide association study of classical Hodgkin lymphoma identifies key regulators of disease susceptibility.	Mixed cellularity Hodgkin lymphoma	828 European ancestry cases, 14,315 European ancestry controls	135 cases, 3,069 controls	6p22.1	HLA-F	rs1633096-?	NR	3E-23		1.79	[1.59-2.00]	Illumina [> 10000000] (imputed)	N
811	chr6	29708908	29708909	rs374787445	31577861	Dai J	2019-10-31	Int J Cancer	Genome-wide association study of INDELs identified four novel susceptibility loci associated with lung cancer risk.	Lung cancer	20,871 European ancestry cases, 15,971 European ancestry controls, 2,331 Chinese ancestry cases, 3,077 Chinese ancestry controls	NA	6p22.1	HLA-F, AS1	rs374787445-D	0.18	7E-9		1.11	[1.07-1.15]	Illumina [484196]	N
811	chr6	29712255	29712256	rs9258224	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	HLA-F-AS1, MICE	rs9258224-A	NR	2E-8		0.0282221	[0.018-0.038] unit decrease	Affymetrix [321016] (imputed)	N
811	chr6	29723160	29723161	rs9258260	22412388	Kenny EE	2012-03-08	PLoS Genet	A genome-wide scan of Ashkenazi Jewish Crohn's disease suggests novel susceptibility loci.	Crohn's disease	737 Ashkenazi Jewish cases, 2,257  Ashkenazi Jewish controls	971 Ashkenazi Jewish cases, 2,124 Ashkenazi Jewish controls	6p22.1	UBD, HLA-A, HLA-G, HLA-F, MOG, GABBR1, HLA-H	rs9258260-T	0.104	2E-10		1.45	[1.21-1.68]	Affymetrix, Illumina [1060934] (imputed)	N
811	chr6	29726045	29726046	rs1633063	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Sleep duration	384,317 European ancestry individuals	NA	6p22.1		rs1633063-T	0.246	3E-9		0.01681	[0.011-0.022] unit decrease	Affymetrix, Illumina [10862567] (imputed)	N
811	chr6	29730184	29730185	rs1610633	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p22.1		rs1610633-G	0.752	5E-94				Affymetrix [10369434] (imputed)	N
811	chr6	29730847	29730848	rs1611284	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p22.1	XXbac-BPG170G13.31	rs1611284-G	NR	2E-9		0.0170381	[0.011-0.023] unit decrease	Affymetrix [319769] (imputed)	N
811	chr6	29730847	29730848	rs1611284	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p22.1	XXbac-BPG170G13.31	rs1611284-G	NR	2E-8		0.015981	[0.01-0.022] unit decrease	Affymetrix [319769] (imputed)	N
811	chr6	29732594	29732595	rs1737062	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p22.1		rs1737062-C	0.472	8E-23				Affymetrix [10369434] (imputed)	N
811	chr6	29734929	29734930	rs35794939	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antithrombotic agents)	67,653 European ancestry cases, 85,986 European ancestry controls, 54,220 East Asian ancestry cases, 124,506 East Asian ancestry controls	NA	6p22.1		rs35794939-G	NR	2E-11		0.086	[0.061-0.111] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
811	chr6	29735549	29735550	rs115635848	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	XXbac-BPG170G13.31	rs115635848-A	NR	9E-11		0.0221196	[0.015-0.029] unit decrease	Affymetrix [323858] (imputed)	N
811	chr6	29735549	29735550	rs115635848	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	XXbac-BPG170G13.31	rs115635848-A	NR	8E-11		0.0222067	[0.016-0.029] unit decrease	Affymetrix [127266] (imputed)	N
811	chr6	29735796	29735797	rs28986310	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	6p22.1	NR	rs28986310-T	0.0618266	2E-8		5.66	z score increase	NR [10847151] (imputed)	N
811	chr6	29735796	29735797	rs28986310	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	6p22.1	intergenic	rs28986310-T	0.061827	1E-7		5.292	z score increase	Illumina [18485882] (imputed)	N
811	chr6	29737562	29737563	rs1737030	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mononucleosis	17,457 European ancestry cases, 68,446 European ancestry controls	NA	6p22.1	NR	rs1737030-?	NR	8E-7		0.0636	[0.038-0.089] unit decrease	Illumina [at least 560000] (imputed)	N
811	chr6	29738689	29738690	rs1815741	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Non-small cell lung cancer	27,120 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	6p22.1	NR	rs1815741-C	0.92	3E-7		0.86	[0.81-0.91]	NR [NR] (imputed)	N
811	chr6	29738689	29738690	rs1815741	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Lung adenocarcinoma	15,581 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	6p22.1	NR	rs1815741-C	0.92	2E-7		0.84	[0.78-0.89]	NR [NR] (imputed)	N
811	chr6	29738999	29739000	rs3888722	30169916	Sun Y	2018-08-31	J Eur Acad Dermatol Venereol	Investigation of the Predisposing Factor of Pemphigus and its clinical subtype through a Genome-wide association and next generation sequence analysis.	Pemphigus foliaceus	65 Chinese ancestry cases, 844 Chinese ancestry controls	at least 49 Chinese ancestry cases, up to 996 Chinese ancestry controls	6p22.1	NR	rs3888722-?	NR	7E-9		2.74		Illumina [5546030] (imputed)	N
811	chr6	29747734	29747735	rs116603789	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p22.1	NR	rs116603789-?	NR	1E-6		0.2936	[0.17-0.41] unit increase	Illumina [at least 560000] (imputed)	N
811	chr6	29748690	29748691	rs1611236	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p22.1		rs1611236-A	0.678	4E-29				Affymetrix [10369434] (imputed)	N
811	chr6	29748690	29748691	rs1611236	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p22.1		rs1611236-A	0.678	6E-22				Affymetrix [10369434] (imputed)	N
811	chr6	29748690	29748691	rs1611236	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p22.1		rs1611236-A	0.678	7E-31				Affymetrix [10369434] (imputed)	N
811	chr6	29748690	29748691	rs1611236	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p22.1		rs1611236-A	0.678	4E-48				Affymetrix [10369434] (imputed)	N
811	chr6	29748690	29748691	rs1611236	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p22.1		rs1611236-A	0.678	8E-38				Affymetrix [10369434] (imputed)	N
811	chr6	29748690	29748691	rs1611236	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p22.1		rs1611236-A	0.678	1E-16				Affymetrix [10369434] (imputed)	N
811	chr6	29751128	29751129	rs9258357	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p22.1		rs9258357-T	0.163	4E-16				Affymetrix [10369434] (imputed)	N
811	chr6	29751128	29751129	rs9258357	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	6p22.1		rs9258357-T	0.163	3E-15				Affymetrix [10369434] (imputed)	N
811	chr6	29751128	29751129	rs9258357	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p22.1		rs9258357-T	0.163	3E-10				Affymetrix [10369434] (imputed)	N
811	chr6	29752807	29752808	rs9258375	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p22.1	NR	rs9258375-G	0.122	1E-12		0.0131	[0.0094-0.0168] unit decrease	NR [7666894] (imputed)	N
811	chr6	29752807	29752808	rs9258375	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA	6p22.1	NR	rs9258375-?	NR	8E-6		0.0571	[0.032-0.082] unit decrease	Illumina [at least 560000] (imputed)	N
812	chr6	29754392	29754393	rs114802991	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	6p22.1	HLA-G	rs114802991-G	0.993211	8E-9		0.072933	[0.048-0.098] unit decrease	Affymetrix [NR] (imputed)	N
812	chr6	29759875	29759876	rs1611207	32752121	Nedoszytko B	2020-07-31	Int J Mol Sci	Results from a Genome-Wide Association Study (GWAS) in Mastocytosis Reveal New Gene Polymorphisms Associated with WHO Subgroups.	Mastocytosis	234 European ancestry cases, 5,606 European ancestry controls	NA	6p22.1	HLA-V	rs1611207-A	0.3807	3E-13		2.105	[1.9-2.31]	Illumina [281811]	N
812	chr6	29759875	29759876	rs1611207	32752121	Nedoszytko B	2020-07-31	Int J Mol Sci	Results from a Genome-Wide Association Study (GWAS) in Mastocytosis Reveal New Gene Polymorphisms Associated with WHO Subgroups.	Cutaneous mastocytosis	141 European ancestry cases, 5,606 European ancestry controls	NA	6p22.1	HLA-V	rs1611207-A	0.3807	1E-8		2.01	[-18.0604-22.0804]	Illumina [281811]	N
812	chr6	29760028	29760029	rs45479291	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	229 European ancestry cases, 1,088 European ancestry controls	NA	6p22.1	HLA-V	rs45479291-?	NR	2E-16	(conditional on rs12524487and rs62392216)			Illumina [4388215] (imputed)	N
812	chr6	29762902	29762903	rs1737002	32771030	Tangtanatakul P	2020-08-08	Arthritis Res Ther	Meta-analysis of genome-wide association study identifies FBN2 as a novel locus associated with systemic lupus erythematosus in Thai population.	Systemic lupus erythematosus	487 Thai cases, 1,606 Thai controls	405 Thai cases, 1,590 Thai controls	6p22.1	HLA-V	rs1737002-A	0.08	2E-6		1.6334	[NR]	Illumina [421909] (imputed)	N
812	chr6	29764471	29764472	rs1633005	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p22.1	HCG4, HLA-G	rs1633005-A	0.282	7E-16				Illumina [118177]	N
812	chr6	29765086	29765087	rs2523414	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	6p22.1	NR	rs2523414-?	NR	6E-14		7.508	NR z score increase	Illumina [at least 830937] (imputed)	N
812	chr6	29768343	29768344	rs1611185	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	HLA-P	rs1611185-C	NR	2E-9		0.0171984	[0.012-0.023] unit decrease	Affymetrix [321016] (imputed)	N
812	chr6	29771620	29771621	rs1610660	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	6p22.1	RPL7AP7	rs1610660-G	0.19782	5E-16		0.036476128	[0.028-0.045] unit decrease	Affymetrix [93095623] (imputed)	N
812	chr6	29777675	29777676	rs9380141	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p22.1	HCG4, HLA-G	rs9380141-C	0.29	1E-6	(EA)	1.94	[1.48-2.55]	Illumina [up to 547389]	N
812	chr6	29781048	29781049	rs1611182	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	6p22.1	MICG	rs1611182-T	NR	4E-9		0.017276	[0.012-0.023] unit increase	Affymetrix [321788] (imputed)	N
812	chr6	29782047	29782048	rs1610707	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	6p22.1	MICG	rs1610707-A	0.359635	1E-13		0.02435493	[0.018-0.031] unit increase	Affymetrix [93095623] (imputed)	N
812	chr6	29786767	29786768	rs56221809	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	6p22.1		rs56221809-G	0.863227	8E-9		0.033593	[0.022-0.045] unit decrease	NR [11722792] (imputed)	N
812	chr6	29788956	29788957	rs201604542	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p22.1		rs201604542-?	NR	6E-13		0.105892	[0.076-0.135] unit increase	Affymetrix [20259828] (imputed)	N
812	chr6	29796684	29796685	rs1632941	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	6p22.1	NR	rs1632941-C	0.46	7E-10	(Conditioned on chr6:28129789)	0.015807396	[0.011-0.021] unit decrease	NR [~ 10000000] (imputed)	N
812	chr6	29797042	29797043	rs145023077	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs145023077-?		7E-8		1.06	[1.04-1.09]	Illumina [7645193] (imputed)	N
812	chr6	29797042	29797043	rs145023077	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs145023077-?		8E-9		1.83	[1.49-2.25]	Illumina [7645193] (imputed)	N
812	chr6	29797419	29797420	rs12722482	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p22.1	NR	rs12722482-?	NR	5E-7		0.0966	[0.059-0.134] unit increase	Illumina [at least 560000] (imputed)	N
812	chr6	29798793	29798794	rs9380142	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	6p22.1	HLA-G	rs9380142-G	0.310253	5E-11		0.0409033	[0.029-0.053] unit decrease	Affymetrix [93095623] (imputed)	N
812	chr6	29799268	29799269	rs1611141	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	6p22.1	HCG4P8	rs1611141-G	0.499184	2E-24		0.031040031	[0.025-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
812	chr6	29800210	29800211	rs12662618	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	6p22.1	HCG4P8	rs12662618-C	0.1014	5E-15		0.04632551	[0.035-0.058] unit increase	Affymetrix [~ 2500000] (imputed)	N
812	chr6	29800210	29800211	rs12662618	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	6p22.1	HCG4P8	rs12662618-C	0.1014	5E-16		0.04778197	[0.036-0.059] unit decrease	Affymetrix [~ 2500000] (imputed)	N
812	chr6	29800210	29800211	rs12662618	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	6p22.1	HCG4P8	rs12662618-C	0.1015	1E-17		0.05062162	[0.039-0.062] unit decrease	Affymetrix [~ 2500000] (imputed)	N
812	chr6	29802689	29802690	rs9380145	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p22.1	NR	rs9380145-C	0.361	2E-21	(IFNAR2_of_CD20p)			Illumina [5084123] (imputed)	N
812	chr6	29806900	29806901	rs407238	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p22.1	HLA-G	rs407238-C	NR	4E-9		0.0168935	[0.011-0.023] unit decrease	Affymetrix [319769] (imputed)	N
812	chr6	29806900	29806901	rs407238	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p22.1	HLA-G	rs407238-C	NR	2E-8		0.0162062	[0.011-0.022] unit decrease	Affymetrix [319769] (imputed)	N
812	chr6	29806900	29806901	rs407238	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	HLA-G	rs407238-C	NR	7E-12		0.0196596	[0.014-0.025] unit increase	Affymetrix [321016] (imputed)	N
812	chr6	29806900	29806901	rs407238	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	23,963 European ancestry cases, 306,942 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	43,254 European ancestry cases, 1,471,118 European ancestry controls	6p22.1	HLA-G	rs407238-C	NR	4E-6		0.0336	unit decrease	Illumina [15409056] (imputed)	N
812	chr6	29807392	29807393	rs2517887	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	6p22.1	HLA-G	rs2517887-G	0.793716	2E-9		0.0146864	[0.0099-0.0195] unit decrease	Affymetrix [NR] (imputed)	N
812	chr6	29809784	29809786	rs34590927	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	6p22.1	NR	rs34590927-?	NR	4E-7		0.062	[0.038-0.086] unit decrease	Illumina [at least 560000] (imputed)	N
812	chr6	29809784	29809786	rs34590927	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	6p22.1	HLA-G, HLA-H	rs34590927-?	NR	4E-7		1.0638298	[1.04-1.09]	Illumina [13754664] (imputed)	N
812	chr6	29809859	29809860	rs1476570	30529582	Lu Y	2018-12-06	Gastroenterology	Large-scale Genome-wide Association Study of East Asians Identifies Loci Associated With Risk for Colorectal Cancer.	Colorectal cancer	22,775 East Asian ancestry cases, 47,731 East Asian ancestry controls	NA	6p22.1	HLA-G	rs1476570-A	0.376	7E-9		1.12	[1.08-1.16]	Affymetrix, Illumina [up to 10700000] (imputed)	N
812	chr6	29812894	29812895	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small LDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	1E-8		0.0338512	[0.022-0.046] unit decrease	NR [11722792] (imputed)	N
812	chr6	29812894	29812895	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium LDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	4E-8		0.0327944	[0.021-0.044] unit decrease	NR [11722792] (imputed)	N
812	chr6	29812894	29812895	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large LDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	3E-10		0.0370981	[0.026-0.049] unit decrease	NR [11722792] (imputed)	N
812	chr6	29812894	29812895	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in LDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	1E-9		0.0361295	[0.024-0.048] unit decrease	NR [11722792] (imputed)	N
812	chr6	29812894	29812895	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in IDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	2E-9		0.0345436	[0.023-0.046] unit decrease	NR [11722792] (imputed)	N
812	chr6	29812894	29812895	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol minus HDL-C levels	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	5E-10		0.0368197	[0.025-0.048] unit decrease	NR [11722792] (imputed)	N
812	chr6	29812894	29812895	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Remnant cholesterol (non-HDL, non-LDL -cholesterol)	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	3E-9		0.0352589	[0.024-0.047] unit decrease	NR [11722792] (imputed)	N
812	chr6	29812894	29812895	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium LDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	1E-8		0.0342027	[0.023-0.046] unit decrease	NR [11722792] (imputed)	N
812	chr6	29812894	29812895	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large LDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	4E-10		0.0369858	[0.025-0.049] unit decrease	NR [11722792] (imputed)	N
812	chr6	29812894	29812895	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in LDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	9E-10		0.036396	[0.025-0.048] unit decrease	NR [11722792] (imputed)	N
812	chr6	29812894	29812895	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in IDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	3E-10		0.0361572	[0.025-0.047] unit decrease	NR [11722792] (imputed)	N
812	chr6	29812894	29812895	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	LDL cholesterol levels	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	4E-10		0.0370623	[0.025-0.049] unit decrease	NR [11722792] (imputed)	N
812	chr6	29812894	29812895	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	5E-9		0.0347629	[0.023-0.046] unit decrease	NR [11722792] (imputed)	N
812	chr6	29812894	29812895	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	1E-8		0.0339143	[0.022-0.046] unit decrease	NR [11722792] (imputed)	N
812	chr6	29812894	29812895	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	4E-10		0.0372639	[0.026-0.049] unit decrease	NR [11722792] (imputed)	N
812	chr6	29812894	29812895	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large LDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	1E-10		0.0378589	[0.026-0.049] unit decrease	NR [11722792] (imputed)	N
812	chr6	29812894	29812895	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in LDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	1E-10		0.0379624	[0.026-0.05] unit decrease	NR [11722792] (imputed)	N
812	chr6	29812894	29812895	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small LDL particles	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	3E-8		0.0330855	[0.021-0.045] unit decrease	NR [11722792] (imputed)	N
812	chr6	29812894	29812895	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large LDL particles	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	7E-11		0.038717	[0.027-0.05] unit decrease	NR [11722792] (imputed)	N
812	chr6	29812894	29812895	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of LDL particles	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	5E-10		0.0371209	[0.025-0.049] unit decrease	NR [11722792] (imputed)	N
812	chr6	29812894	29812895	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Clinical LDL cholesterol levels	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	2E-10		0.0378905	[0.026-0.05] unit decrease	NR [11722792] (imputed)	N
812	chr6	29812894	29812895	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small LDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	2E-8		0.033257	[0.022-0.045] unit decrease	NR [11722792] (imputed)	N
812	chr6	29812894	29812895	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium VLDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	1E-11		0.0401155	[0.029-0.052] unit decrease	NR [11722792] (imputed)	N
812	chr6	29812894	29812895	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large LDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	2E-10		0.0376083	[0.026-0.049] unit decrease	NR [11722792] (imputed)	N
812	chr6	29812894	29812895	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in VLDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	4E-8		0.0327951	[0.021-0.044] unit decrease	NR [11722792] (imputed)	N
812	chr6	29812894	29812895	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in LDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	1E-9		0.0361619	[0.025-0.048] unit decrease	NR [11722792] (imputed)	N
812	chr6	29812894	29812895	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in IDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	3E-9		0.0342481	[0.023-0.046] unit decrease	NR [11722792] (imputed)	N
812	chr6	29812894	29812895	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	1E-8		0.0330288	[0.022-0.044] unit decrease	NR [11722792] (imputed)	N
812	chr6	29812894	29812895	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small LDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	4E-9		0.0352069	[0.024-0.047] unit decrease	NR [11722792] (imputed)	N
812	chr6	29812894	29812895	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	8E-11		0.0386497	[0.027-0.05] unit decrease	NR [11722792] (imputed)	N
812	chr6	29812894	29812895	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	2E-8		0.0333427	[0.022-0.045] unit decrease	NR [11722792] (imputed)	N
812	chr6	29812894	29812895	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large LDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	1E-10		0.0379659	[0.026-0.05] unit decrease	NR [11722792] (imputed)	N
812	chr6	29812894	29812895	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in IDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	2E-9		0.0344785	[0.023-0.046] unit decrease	NR [11722792] (imputed)	N
812	chr6	29812894	29812895	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein B levels	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	9E-10		0.0364076	[0.025-0.048] unit decrease	NR [11722792] (imputed)	N
812	chr6	29816420	29816421	rs2394186	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	6p22.1	NR	rs2394186-G	0.2192	2E-8		0.0271	[0.018-0.037] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
812	chr6	29816541	29816542	rs28724990	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total free cholesterol levels	115,082 European ancestry individuals	NA	6p22.1		rs28724990-T	0.844316	4E-9		0.0325566	[0.022-0.043] unit decrease	NR [11722792] (imputed)	N
812	chr6	29816541	29816542	rs28724990	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total esterified cholesterol levels	115,082 European ancestry individuals	NA	6p22.1		rs28724990-T	0.844316	2E-8		0.0309173	[0.02-0.042] unit decrease	NR [11722792] (imputed)	N
812	chr6	29816541	29816542	rs28724990	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol levels	115,082 European ancestry individuals	NA	6p22.1		rs28724990-T	0.844316	1E-8		0.031549	[0.021-0.042] unit decrease	NR [11722792] (imputed)	N
812	chr6	29817834	29817834	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	2E-12		0.0298616	[0.022-0.038] unit increase	NR [11722792] (imputed)	N
812	chr6	29817834	29817834	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	2E-12		0.0298616	[0.022-0.038] unit increase	NR [11722792] (imputed)	N
812	chr6	29817834	29817834	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	1E-13		0.0318981	[0.023-0.04] unit increase	NR [11722792] (imputed)	N
812	chr6	29817834	29817834	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	1E-13		0.0318981	[0.023-0.04] unit increase	NR [11722792] (imputed)	N
812	chr6	29817834	29817834	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	2E-11		0.0287582	[0.02-0.037] unit increase	NR [11722792] (imputed)	N
812	chr6	29817834	29817834	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	2E-11		0.0287582	[0.02-0.037] unit increase	NR [11722792] (imputed)	N
812	chr6	29817834	29817834	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	6E-12		0.0290211	[0.021-0.037] unit increase	NR [11722792] (imputed)	N
812	chr6	29817834	29817834	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	6E-12		0.0290211	[0.021-0.037] unit increase	NR [11722792] (imputed)	N
812	chr6	29817834	29817834	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of apolipoprotein B to apolipoprotein A1 levels	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	9E-12		0.0295387	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
812	chr6	29817834	29817834	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of apolipoprotein B to apolipoprotein A1 levels	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	9E-12		0.0295387	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
812	chr6	29817834	29817834	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	2E-12		0.0296171	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
812	chr6	29817834	29817834	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	2E-12		0.0296171	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
812	chr6	29817834	29817834	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	9E-11		0.0275259	[0.019-0.036] unit increase	NR [11722792] (imputed)	N
812	chr6	29817834	29817834	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	9E-11		0.0275259	[0.019-0.036] unit increase	NR [11722792] (imputed)	N
812	chr6	29817834	29817834	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	2E-13		0.0307478	[0.023-0.039] unit decrease	NR [11722792] (imputed)	N
812	chr6	29817834	29817834	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	2E-13		0.0307478	[0.023-0.039] unit decrease	NR [11722792] (imputed)	N
812	chr6	29817834	29817834	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	2E-9		0.0253353	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
812	chr6	29817834	29817834	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	2E-9		0.0253353	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
812	chr6	29817834	29817834	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small LDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	5E-12		0.0303335	[0.022-0.039] unit decrease	NR [11722792] (imputed)	N
812	chr6	29817834	29817834	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small LDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	5E-12		0.0303335	[0.022-0.039] unit decrease	NR [11722792] (imputed)	N
812	chr6	29817834	29817834	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in IDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	2E-9		0.0257238	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
812	chr6	29817834	29817834	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in IDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	2E-9		0.0257238	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
812	chr6	29817834	29817834	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of IDL particles	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	7E-10		0.0268846	[0.018-0.035] unit decrease	NR [11722792] (imputed)	N
812	chr6	29817834	29817834	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of IDL particles	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	7E-10		0.0268846	[0.018-0.035] unit decrease	NR [11722792] (imputed)	N
812	chr6	29817834	29817834	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	4E-12		0.0285378	[0.02-0.037] unit decrease	NR [11722792] (imputed)	N
812	chr6	29817834	29817834	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	4E-12		0.0285378	[0.02-0.037] unit decrease	NR [11722792] (imputed)	N
812	chr6	29817834	29817834	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	4E-13		0.0301476	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
812	chr6	29817834	29817834	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	4E-13		0.0301476	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
812	chr6	29818164	29818165	rs28728979	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	MICF	rs28728979-A	NR	3E-8		0.0362437	[0.023-0.049] unit decrease	Affymetrix [321016] (imputed)	N
812	chr6	29818725	29818726	rs2523761	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	NR	rs2523761-?	NR	6E-8		5.432	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
812	chr6	29819598	29819599	rs9258593	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6p22.1		rs9258593-?	NR	9E-6		1.05543	[1.03-1.08]	NR [685523]	N
812	chr6	29821339	29821340	rs17179234	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MRPL55	5,367 Icelandic ancestry individuals	NA	6p22.1		rs17179234-A	0.1077	3E-55		0.466688	[0.41-0.53] unit increase	Illumina [7506463] (imputed)	N
812	chr6	29821605	29821606	rs17185657	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	6p22.1	MICF	rs17185657-T	0.076717	2E-15		0.032850858	[0.025-0.041] unit increase	Affymetrix [93095623] (imputed)	N
812	chr6	29822081	29822082	rs9258644	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p22.1		rs9258644-?	NR	3E-17		0.0268138	[0.021-0.033] unit decrease	Affymetrix [20259828] (imputed)	N
812	chr6	29822431	29822432	rs58005484	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	6p22.1	MICF	rs58005484-T	0.140864	8E-28		0.035311565	[0.029-0.042] unit increase	Affymetrix [93095623] (imputed)	N
812	chr6	29822431	29822432	rs58005484	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	6p22.1	MICF	rs58005484-T	0.140853	1E-24		0.033428524	[0.027-0.04] unit decrease	Affymetrix [93095623] (imputed)	N
812	chr6	29822431	29822432	rs58005484	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	6p22.1	MICF	rs58005484-T	0.1409	2E-20		0.04769708	[0.038-0.058] unit increase	Affymetrix [~ 2500000] (imputed)	N
812	chr6	29828659	29828660	rs2523822	21570397	Lucena MI	2011-04-12	Gastroenterology	Susceptibility to amoxicillin-clavulanate-induced liver injury is influenced by multiple HLA class I and II alleles.	Drug-induced liver injury (amoxicillin-clavulanate)	201 European ancestry cases, 532 European ancestry controls	NA	6p22.1	HLA-A	rs2523822-?	NR	2E-10		2.3	[1.80-2.90]	Illumina [822927]	N
812	chr6	29828971	29828972	rs9258750	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6p22.1		rs9258750-G	0.176259	2E-14		0.023563657	[0.018-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
812	chr6	29829250	29829251	rs1611713	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p22.1		rs1611713-A	0.712	2E-64				Affymetrix [10369434] (imputed)	N
812	chr6	29829635	29829636	rs1611719	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	6p22.1	HLA-G	rs1611719-G	0.79027	5E-13		0.0174799	[0.013-0.022] unit increase	Affymetrix [NR] (imputed)	N
812	chr6	29829635	29829636	rs1611719	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	6p22.1	HLA-G	rs1611719-G	0.790195	1E-14		0.019154	[0.014-0.024] unit increase	Affymetrix [NR] (imputed)	N
812	chr6	29832331	29832332	rs2524035	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	6p22.1	intergenic	rs2524035-G	0.8188	3E-23		0.04626543	[0.037-0.055] unit decrease	Affymetrix [~ 2500000] (imputed)	N
812	chr6	29832694	29832695	rs1611747	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small LDL	115,082 European ancestry individuals	NA	6p22.1		rs1611747-T	0.604397	4E-10		0.0262493	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
812	chr6	29832694	29832695	rs1611747	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p22.1		rs1611747-T	0.604	9E-22				Affymetrix [10369434] (imputed)	N
812	chr6	29832845	29832846	rs2517827	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	MICF	rs2517827-A	NR	2E-10		0.0215463	[0.015-0.028] unit decrease	Affymetrix [323858] (imputed)	N
812	chr6	29832845	29832846	rs2517827	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	MICF	rs2517827-A	NR	8E-11		0.0219247	[0.015-0.029] unit decrease	Affymetrix [127266] (imputed)	N
812	chr6	29832991	29832992	rs34832458	31577861	Dai J	2019-10-31	Int J Cancer	Genome-wide association study of INDELs identified four novel susceptibility loci associated with lung cancer risk.	Lung cancer	20,871 European ancestry cases, 15,971 European ancestry controls, 2,331 Chinese ancestry cases, 3,077 Chinese ancestry controls	NA	6p22.1	HLA-G	rs34832458-T	0.39	1E-9		0.92	[0.89-0.94]	Illumina [484196]	N
812	chr6	29833056	29833057	rs3128900	33269293	Kannambath S	2020-10-16	Open Forum Infect Dis	Genome-Wide Association Study Identifies Novel Colony Stimulating Factor 1 Locus Conferring Susceptibility to Cryptococcosis in Human Immunodeficiency Virus-Infected South Africans.	Cryptococcosis in HIV infection	319 South African ancestry cases, 399 South African ancestry controls	NA	6p22.1	HLA-H	rs3128900-?	NR	5E-6		0.9658	[NR]	Illumina [2686126] (imputed)	N
812	chr6	29833056	29833057	rs3128900	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6p22.1		rs3128900-T	0.845434	2E-21		0.032471824	[0.026-0.039] unit decrease	Affymetrix [93095623] (imputed)	N
812	chr6	29833471	29833472	rs7760545	33574277	Kawai Y	2021-02-11	NPJ Genom Med	Mapping of susceptible variants for cold medicine-related Stevens-Johnson syndrome by whole-genome resequencing.	Cold medicine-related Stevens-Johnson syndrome/toxic epidermal necrolysis (SJS/TEN) with severe ocular complications	133 Japanese ancestry cases, 418 Japanese ancestry controls	NA	6p22.1		rs7760545-A	0.2594	4E-16		4.373		Illumina [7608150]	N
812	chr6	29836740	29836741	rs1611637	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	IgM levels	14,442 Icelandic ancestry individuals	2,157 Swedish ancestry individuals	6p22.1	HLA-G	rs1611637-A	0.4554	1E-21		0.11	NR SD units increase	Illumina [21568490] (imputed)	N
812	chr6	29837506	29837507	rs885932	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p22.1	NR	rs885932-A	0.190644	2E-12		0.026577342	[0.019-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
812	chr6	29840242	29840243	rs2523815	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p22.1	HLA-A	rs2523815-A	0.64	2E-22		1.12	[1.11-1.14]	Illumina [at least 560000] (imputed)	N
812	chr6	29840739	29840740	rs3132713	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	6p22.1		rs3132713-A	0.181	2E-27				Affymetrix [10369434] (imputed)	N
812	chr6	29841216	29841217	rs56213322	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	6p22.1		rs56213322-A	0.819527	5E-23		0.029193865	[0.023-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
812	chr6	29842544	29842545	rs2734963	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Oral cavity and pharyngeal cancer	1,223 European ancestry cases, 410,350 European ancestry controls	NA	6p22.1		rs2734963-T	0.193283	6E-7		1.2753475	NR	Affymetrix [7846216] (imputed)	N
812	chr6	29848056	29848057	rs28849176	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	6p22.1	HLA-G	rs28849176-A	0.456779	1E-17		0.0238021	[0.018-0.029] unit decrease	Affymetrix [NR] (imputed)	N
812	chr6	29849530	29849531	rs3094650	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	6p22.1	NR	rs3094650-C	0.722493	3E-16		0.023382017	[0.018-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
812	chr6	29849530	29849531	rs3094650	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6p22.1	NR	rs3094650-C	0.72248	3E-29		0.031621024	[0.026-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
812	chr6	29849530	29849531	rs3094650	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	6p22.1		rs3094650-C	0.722504	9E-32		0.032617964	[0.027-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
812	chr6	29849618	29849619	rs2523809	22075330	Granada M	2011-11-08	J Allergy Clin Immunol	A genome-wide association study of plasma total IgE concentrations in the Framingham Heart Study.	IgE levels	6,819 European ancestry individuals	7,809 European ancestry indivduals	6p22.1	HLA-G	rs2523809-T	NR	4E-8		0.06	[NR] unit increase	Affymetrix [2540223] (imputed)	N
812	chr6	29850719	29850720	rs1611579	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6p22.1	HLA-H	rs1611579-C	0.122264	4E-17		0.051560964	[0.04-0.064] unit increase	Affymetrix [93095623] (imputed)	N
812	chr6	29850719	29850720	rs1611579	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p22.1	NR	rs1611579-C	0.098	8E-7	(EA)	0.058	[0.035-0.081] unit decrease	Illumina [~ 11800000] (imputed)	N
812	chr6	29850826	29850827	rs1611581	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	6p22.1	NR	rs1611581-C	0.682015	5E-8		0.0185265	[0.012-0.025] unit increase	Affymetrix [16577424] (imputed)	N
812	chr6	29853437	29853438	rs2523802	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	6p22.1	NR	rs2523802-?	NR	2E-8		0.088	[0.057-0.119] unit decrease	Illumina [at least 560000] (imputed)	N
812	chr6	29854568	29854569	rs2734950	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	6p22.1	HLA-H	rs2734950-T	0.402539	6E-12		0.01625928	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
812	chr6	29855855	29855856	rs2734947	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hypothyroidism	1,114 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	6p22.1		rs2734947-C	0.497362317	4E-13		0.35440555	[0.26-0.45] unit increase	Illumina [13429045] (imputed)	N
812	chr6	29872509	29872510	rs189370103	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	6p22.1	NR	rs189370103-?	NR	8E-6	(Native Hawaiian)	1.0607	[NR] unit increase	Illumina [up to 11892802] (imputed)	N
812	chr6	29875991	29875992	rs2517873	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Squamous cell lung carcinoma	8,350 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	6p22.1	NR	rs2517873-A	NR	2E-10		1.23	[1.15-1.31]	NR [NR] (imputed)	N
812	chr6	29875991	29875992	rs2517873	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Non-small cell lung cancer	27,120 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	6p22.1	NR	rs2517873-A	NR	5E-11		1.16	[1.11-1.21]	NR [NR] (imputed)	N
812	chr6	29875991	29875992	rs2517873	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Lung adenocarcinoma	15,581 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	6p22.1	NR	rs2517873-A	NR	3E-6		1.13	[1.08-1.20]	NR [NR] (imputed)	N
812	chr6	29875991	29875992	rs2517873	31326317	Dai J	2019-07-17	Lancet Respir Med	Identification of risk loci and a polygenic risk score for lung cancer: a large-scale prospective cohort study in Chinese populations.	Non-small cell lung cancer	13,327 Chinese ancestry cases, 13,793 European ancestry cases, 13,328 Chinese ancestry controls, 14,027 European ancestry controls	NA	6p22.1	MHC	rs2517873-A	0.145	5E-11		1.16	[1.11-1.21]	Illumina [~ 11000000] (imputed)	N
813	chr6	29889249	29889250	rs75460055	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p22.1	NR	rs75460055-T	0.039	5E-18	(conditional)	0.47	[0.3-0.64]	Illumina [11270530] (imputed)	N
813	chr6	29890748	29890749	rs1611399	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	HCG4B	rs1611399-C	NR	5E-8		0.0192493	[0.012-0.026] unit decrease	Affymetrix [323858] (imputed)	N
813	chr6	29890748	29890749	rs1611399	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	HCG4B	rs1611399-C	NR	4E-8		0.0194622	[0.013-0.026] unit decrease	Affymetrix [127266] (imputed)	N
813	chr6	29893574	29893575	rs9259819	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	6p22.1	HLA-J	rs9259819-G	0.5	2E-9		1.036	[1.02-1.05]	Affymetrix, Illumina [8307659] (imputed)	N
813	chr6	29895663	29895665	rs148228730	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1b levels	8,243 Finnish ancestry individuals	NA	6p22.1	NR	rs148228730-AAT	NR	9E-6		0.074	[0.041-0.107] SD units increase	NR [10700000] (imputed)	N
813	chr6	29897128	29897129	rs389725	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	6p22.1	HCG4B, HLA-U	rs389725-T	0.78328	3E-30		0.03487705	[0.029-0.041] unit decrease	Affymetrix [93095623] (imputed)	N
813	chr6	29898115	29898116	rs2975009	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	6p22.1	HCG4B, HLA-U	rs2975009-T	0.4651	7E-24		0.0380916	[0.031-0.046] unit increase	Affymetrix [~ 2500000] (imputed)	N
813	chr6	29899626	29899627	rs2471863	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p22.1	HLA-A	rs2471863-C	0.526	8E-7		0.057	[0.033-0.081] unit increase	Affymetrix, Illumina [7374092] (imputed)	N
813	chr6	29899676	29899677	rs2524005	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Varicose veins	22,037 European ancestry cases, 437,665 European ancestry controls, 474 East Asian ancestry cases, 178,252 East Asian ancestry controls	NA	6p22.1		rs2524005-A	NR	1E-12		0.0995	[0.072-0.127] unit decrease	Affymetrix, Illumina [25842955] (imputed)	N
813	chr6	29899676	29899677	rs2524005	22688191	Bergen SE	2012-06-12	Mol Psychiatry	Genome-wide association study in a Swedish population yields support for greater CNV and MHC involvement in schizophrenia compared with bipolar disorder.	Bipolar disorder and schizophrenia	2,111 European ancestry schizophrenia cases, 836 European ancestry bipolar disorder cases, 2,535 European ancestry controls	NA	6p22.1	other genes, MHC	rs2524005-?	NR	5E-7		1.32	[NR]	Affymetrix [745006]	N
813	chr6	29900606	29900607	rs190369032	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	6p22.1	Intergenic	rs190369032-G	NR	5E-8		0.0426107	[0.027-0.058] unit increase	Illumina [13520550] (imputed)	N
813	chr6	29902448	29902449	rs72498354	32339537	Roberts V	2020-04-24	J Invest Dermatol	Genome wide association study identifies genetic associations with perceived age.	Youthful appearance (self-reported)	423,992 European ancestry individuals	NA	6p22.1	HLA-A	rs72498354-C	0.960927	4E-9		0.933287	NR	Affymetrix [~ 9600000] (imputed)	N
813	chr6	29903388	29903389	rs410930	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	6p22.1		rs410930-G	0.437235	1E-8		0.024544	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
813	chr6	29903629	29903630	rs1611337	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6p22.1		rs1611337-G	0.437603	2E-14		0.0312596	[0.023-0.039] unit decrease	NR [11722792] (imputed)	N
813	chr6	29903629	29903630	rs1611337	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	6p22.1		rs1611337-G	0.437688	8E-10		0.0255967	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
813	chr6	29903629	29903630	rs1611337	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p22.1		rs1611337-G	0.437603	8E-16		0.0334002	[0.025-0.042] unit decrease	NR [11722792] (imputed)	N
813	chr6	29903629	29903630	rs1611337	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6p22.1		rs1611337-G	0.437603	9E-12		0.0276947	[0.02-0.036] unit decrease	NR [11722792] (imputed)	N
813	chr6	29903629	29903630	rs1611337	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6p22.1		rs1611337-G	0.437603	1E-13		0.0306584	[0.023-0.039] unit increase	NR [11722792] (imputed)	N
813	chr6	29903629	29903630	rs1611337	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	6p22.1		rs1611337-G	0.437688	4E-9		0.0245909	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
813	chr6	29903629	29903630	rs1611337	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	6p22.1		rs1611337-G	0.437603	2E-9		0.0245327	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
813	chr6	29903629	29903630	rs1611337	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p22.1		rs1611337-G	0.437603	5E-18		0.036723	[0.028-0.045] unit increase	NR [11722792] (imputed)	N
813	chr6	29903629	29903630	rs1611337	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6p22.1		rs1611337-G	0.437603	5E-10		0.0250212	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
813	chr6	29903629	29903630	rs1611337	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	6p22.1		rs1611337-G	0.437688	5E-8		0.0224294	[0.014-0.03] unit increase	NR [11722792] (imputed)	N
813	chr6	29903629	29903630	rs1611337	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p22.1		rs1611337-G	0.437603	4E-17		0.0351407	[0.027-0.043] unit increase	NR [11722792] (imputed)	N
813	chr6	29903629	29903630	rs1611337	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6p22.1		rs1611337-G	0.437603	7E-11		0.02633	[0.018-0.034] unit increase	NR [11722792] (imputed)	N
813	chr6	29903990	29903991	rs9259970	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6p22.1		rs9259970-G	0.717498	4E-15		0.0371322	[0.028-0.046] unit decrease	NR [11722792] (imputed)	N
813	chr6	29903990	29903991	rs9259970	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	6p22.1		rs9259970-G	0.717498	5E-8		0.0259759	[0.017-0.035] unit decrease	NR [11722792] (imputed)	N
813	chr6	29903990	29903991	rs9259970	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	6p22.1		rs9259970-G	0.717498	6E-10		0.0286546	[0.02-0.038] unit decrease	NR [11722792] (imputed)	N
813	chr6	29905436	29905437	rs3098023	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium HDL	115,082 European ancestry individuals	NA	6p22.1		rs3098023-A	0.863945	3E-9		0.0367615	[0.025-0.049] unit increase	NR [11722792] (imputed)	N
813	chr6	29905436	29905437	rs3098023	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large HDL	115,082 European ancestry individuals	NA	6p22.1		rs3098023-A	0.863945	6E-9		0.0349811	[0.023-0.047] unit increase	NR [11722792] (imputed)	N
813	chr6	29905436	29905437	rs3098023	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in HDL	115,082 European ancestry individuals	NA	6p22.1		rs3098023-A	0.863945	2E-8		0.0348764	[0.023-0.047] unit increase	NR [11722792] (imputed)	N
813	chr6	29905436	29905437	rs3098023	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium HDL	115,082 European ancestry individuals	NA	6p22.1		rs3098023-A	0.863945	3E-13		0.0429887	[0.031-0.055] unit increase	NR [11722792] (imputed)	N
813	chr6	29905436	29905437	rs3098023	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in HDL	115,082 European ancestry individuals	NA	6p22.1		rs3098023-A	0.863945	9E-11		0.0369227	[0.026-0.048] unit increase	NR [11722792] (imputed)	N
813	chr6	29905451	29905452	rs28749114	33002439	Jin G	2020-10-01	Lancet Oncol	Genetic risk, incident gastric cancer, and healthy lifestyle: a meta-analysis of genome-wide association studies and prospective cohort study.	Gastric cancer	10,254 Han Chinese ancestry cases, 10,914 Han Chinese ancestry controls	NA	6p22.1	NR	rs28749114-A	0.6	5E-9		1.14	NR	Affymetrix, Illumina [6957974] (imputed)	N
813	chr6	29905451	29905452	rs28749114	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p22.1	HLA-A	rs28749114-G	0.359	4E-17	(Tapasin-related protein, TAPBPL.6364.7.3)	0.22	[0.16-0.28] unit decrease	Affymetrix [10572788] (imputed)	N
813	chr6	29905709	29905710	rs112580141	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HVEM on naive CD8+ T cell	1,247 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p22.1		rs112580141-C	0.37079	2E-8		0.2622	[0.17-0.35] unit increase	Illumina [16410374] (imputed)	N
813	chr6	29905944	29905945	rs9260013	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8 on Central Memory CD8+ T cell	2,910 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p22.1		rs9260013-T	0.19942	5E-11		0.2579	[0.18-0.33] unit increase	Illumina [17945467] (imputed)	N
813	chr6	29906312	29906313	rs453325	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	6p22.1	HLA-A	rs453325-A	0.7549	2E-8		0.002	[0.0014-0.0026] unit decrease	Affymetrix [15275733] (imputed)	N
813	chr6	29906690	29906691	rs2860580	27436580	Cui Q	2016-07-19	Hum Mol Genet	An extended genome-wide association study identifies novel susceptibility loci for nasopharyngeal carcinoma.	Nasopharyngeal carcinoma	1,583 Southern Chinese ancestry cases, 2,979 Southern Chinese ancestry controls	5,463 Southern Chinese ancestry cases, 5,591 Southern Chinese ancestry controls	6p22.1	NR	rs2860580-?	0.62	3E-31		1.89	[1.69-2.13]	Illumina [463250]	N
813	chr6	29906690	29906691	rs2860580	20512145	Bei JX	2010-05-30	Nat Genet	A genome-wide association study of nasopharyngeal carcinoma identifies three new susceptibility loci.	Nasopharyngeal carcinoma	1,583 Chinese ancestry cases, 1,894 Chinese ancestry controls	3,507 Chinese ancestry cases, 3,063 Chinese ancestry controls, 284  Chinese ancestry trios	6p22.1	HLA-A	rs2860580-?	0.62	5E-67		1.72	[1.61-1.82]	Illumina [464328]	N
813	chr6	29906775	29906776	rs3916500	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p22.1	HLA-A	rs3916500-A	0.94	7E-6		0.0619	[0.035-0.089] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
813	chr6	29907834	29907835	rs28749130	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	6p22.1	HLA-A	rs28749130-A	0.290175	2E-20		0.05423409	[0.043-0.066] unit increase	Affymetrix [93095623] (imputed)	N
813	chr6	29907894	29907895	rs28749131	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6p22.1	NR	rs28749131-G	0.6706	2E-10		1.041016	[1.03-1.05]	Affymetrix [15688218] (imputed)	N
813	chr6	29908803	29908804	rs13203830	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p22.1	NR	rs13203830-?	NR	8E-10				Affymetrix [~ 8270000] (imputed)	N
813	chr6	29909032	29909033	rs9260078	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein B2M	5,353 Icelandic ancestry individuals	NA	6p22.1		rs9260078-A	0.3408	3E-12		0.126365	[0.091-0.162] unit increase	Illumina [7506463] (imputed)	N
813	chr6	29909216	29909217	rs1632887	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		6p22.1	HLA-A	rs1632887-T	0.725853	2E-12		0.0110934	[0.008-0.0142] unit decrease	Affymetrix [12370749]	N
813	chr6	29909278	29909279	rs138847126	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental extreme longevity (95 years and older)	1,339 middle-aged British cases, 40,934 middle-aged British controls	NA	6p22.1	NR	rs138847126-?	NR	7E-6		0.01176	[0.0066-0.0169] unit decrease	Affymetrix [9658292] (imputed)	N
813	chr6	29909822	29909823	rs534723171	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p22.1	NR	rs534723171-T	0.061	2E-30	(conditional)	2.735	[2.56-2.91]	Illumina [11270530] (imputed)	N
813	chr6	29910357	29910358	rs1143146	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	6p22.1	HLA-A	rs1143146-G	0.462795	8E-17		0.019093748	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
813	chr6	29910377	29910378	rs41546314	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p22.1		rs41546314-T	0.309983	5E-23		1.0479736	[1.04-1.05]	Affymetrix, Illumina [9851866] (imputed)	N
813	chr6	29910477	29910478	rs9260127	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Triglycerides	429,011 European ancestry individuals	NA	6p22.1		rs9260127-G	0.45	7E-14		0.015	mmol/L decrease	NR [NR] (imputed)	N
813	chr6	29910477	29910478	rs9260127	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	6p22.1		rs9260127-G	0.45	3E-20				NR [NR] (imputed)	N
813	chr6	29910477	29910478	rs9260127	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	High density lipoprotein cholesterol levels	392,965 European ancestry individuals	NA	6p22.1		rs9260127-G	0.45	4E-13		0.013	mmol/L decrease	NR [NR] (imputed)	N
813	chr6	29910477	29910478	rs9260127	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	6p22.1		rs9260127-G	0.45	8E-12		0.01	% increase	NR [NR] (imputed)	N
813	chr6	29910477	29910478	rs9260127	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Aspartate aminotransferase levels	424,778 European ancestry individuals	NA	6p22.1		rs9260127-G	0.45	4E-17		0.016	U/L decrease	NR [NR] (imputed)	N
813	chr6	29910477	29910478	rs9260127	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	6p22.1	HCG4P5	rs9260127-C	0.554534	6E-12		0.01662031	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
813	chr6	29910730	29910731	rs79361534	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p22.1	HLA-A	rs79361534-A		1E-36		0.036	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
813	chr6	29910758	29910759	rs1071742	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p22.1		rs1071742-?	NR	2E-17		0.0224179	[0.018-0.027] unit decrease	Affymetrix [20259828] (imputed)	N
813	chr6	29910766	29910767	rs1136689	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	6p22.1	HLA-A	rs1136689-C	0.145613	8E-12		0.022252768	[0.016-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
813	chr6	29910800	29910801	rs1136692	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	HLA-A, HCG4P5	rs1136692-A	NR	1E-9		0.0207185	[0.014-0.027] unit decrease	Affymetrix [323858] (imputed)	N
813	chr6	29910800	29910801	rs1136692	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	HLA-A, HCG4P5	rs1136692-A	NR	1E-9		0.0208558	[0.014-0.028] unit decrease	Affymetrix [127266] (imputed)	N
813	chr6	29911029	29911030	rs9260151	29404672	Roshandel D	2018-02-05	Diabetologia	Meta-genome-wide association studies identify a locus on chromosome 1 and multiple variants in the MHC region for serum C-peptide in type 1 diabetes.	C-peptide levels in type I diabetes	3,479 European ancestry individuals	NA	6p22.1	MHC, HLA-A	rs9260151-T	0.09	8E-8				Illumina [7988630] (imputed)	N
813	chr6	29911113	29911114	rs3173420	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	6p22.1	HLA-A	rs3173420-A	0.525347	1E-30		0.02624179	[0.022-0.031] unit increase	Affymetrix [93095623] (imputed)	N
813	chr6	29911227	29911228	rs9256983	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p22.1	NR	rs9256983-?	NR	5E-6		0.0485	[0.028-0.069] unit increase	Illumina [at least 560000] (imputed)	N
813	chr6	29911238	29911239	rs9260155	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p22.1	HLA-A	rs9260155-C	0.420482	2E-24		0.027366111	[0.022-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
813	chr6	29911355	29911356	rs3132687	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	6p22.1	NR	rs3132687-?	NR	2E-11	(MIC-A)	0.664201	[0.47-0.86] unit increase	Illumina [11901634] (imputed)	N
813	chr6	29911683	29911684	rs9260164	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	6p22.1	HLA-A	rs9260164-C	0.737668	6E-21		0.0151662	[0.012-0.018] unit decrease	Affymetrix [12370749]	N
813	chr6	29912456	29912457	rs9260194	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycoprotein acetyls levels	115,082 European ancestry individuals	NA	6p22.1		rs9260194-C	0.511331	5E-17		0.0344827	[0.026-0.043] unit decrease	NR [11722792] (imputed)	N
813	chr6	29912493	29912494	rs2975059	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p22.1		rs2975059-T	0.673	3E-55				Affymetrix [10369434] (imputed)	N
813	chr6	29912493	29912494	rs2975059	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6p22.1	HLA-A	rs2975059-C	0.327132	2E-74		0.04847726	[0.043-0.054] unit increase	Affymetrix [93095623] (imputed)	N
813	chr6	29912593	29912594	rs17882753	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	6p22.1	HLA-A	rs17882753-T	0.1254	6E-21		0.05153304	[0.041-0.062] unit increase	Affymetrix [~ 2500000] (imputed)	N
813	chr6	29913297	29913298	rs1061235	21428769	McCormack M	2011-03-24	N Engl J Med	HLA-A*3101 and carbamazepine-induced hypersensitivity reactions in Europeans.	Adverse response to carbamazepine	65 European ancestry cases, 3,987 European ancestry controls	80 European ancestry cases, 257 European ancestry controls	6p22.1	HLA-A*3101	rs1061235-?	NR	1E-7		9.12	[4.03-20.65]	Illumina [~ 1200000] (imputed)	N
813	chr6	29913885	29913886	rs34941730	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p22.1	HLA-A	rs34941730-G	0.119	2E-9		0.102	[0.069-0.135] unit decrease	Affymetrix, Illumina [7374092] (imputed)	N
813	chr6	29914532	29914533	rs376253	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6p22.1	HLA-A	rs376253-A	NR	3E-10		0.0221166	[0.015-0.029] unit decrease	Affymetrix [321114] (imputed)	N
813	chr6	29914772	29914773	rs17179564	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	82,810 East Asian ancestry individuals	NA	6p22.1		rs17179564-A	0.36573	6E-10		0.0301926	[0.021-0.04] unit increase	Illumina [13467171] (imputed)	N
813	chr6	29914827	29914828	rs2735099	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p22.1	NR	rs2735099-T	0.417	3E-26	(IFNAR2_of_CD20p)			Illumina [5084123] (imputed)	N
813	chr6	29915060	29915061	rs2248162	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	HLA-A	rs2248162-T	NR	3E-8		0.0179351	[0.012-0.024] unit decrease	Affymetrix [323858] (imputed)	N
813	chr6	29915886	29915887	rs2517720	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6p22.1	HLA-A	rs2517720-C	0.555569	1E-14		0.022822132	[0.017-0.029] unit increase	Affymetrix [93095623] (imputed)	N
813	chr6	29916803	29916804	rs1655901	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	6p22.1	HLA-A	rs1655901-C	0.557583	3E-22		0.02534704	[0.02-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
813	chr6	29916884	29916885	rs9260313	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p22.1	HLA-A	rs9260313-C		5E-24		0.02	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
813	chr6	29916884	29916885	rs9260313	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	6p22.1	HLA-A	rs9260313-C	0.2875	1E-15		0.03200038	[0.024-0.04] unit increase	Affymetrix [~ 2500000] (imputed)	N
813	chr6	29916884	29916885	rs9260313	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	6p22.1	HLA-A	rs9260313-C	0.2876	1E-15		0.03178619	[0.024-0.04] unit increase	Affymetrix [~ 2500000] (imputed)	N
813	chr6	29918098	29918099	rs2517713	19664746	Tse KP	2009-08-05	Am J Hum Genet	Genome-wide association study reveals multiple nasopharyngeal carcinoma-associated loci within the HLA region at chromosome 6p21.3.	Nasopharyngeal carcinoma	277 Han Chinese ancestry cases, 285 Han Chinese ancestry controls	635 Han Chinese ancestry cases, 1,640 Han Chinese ancestry controls	6p22.1	HLA-A	rs2517713-A	0.62	4E-20		1.88	[1.65-2.15]	Illumina [480365]	N
813	chr6	29919108	29919109	rs9260426	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p22.1		rs9260426-?	NR	6E-27		0.0229231	[0.019-0.027] unit increase	Affymetrix [20259828] (imputed)	N
813	chr6	29919108	29919109	rs9260426	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	6p22.1	HLA-A	rs9260426-A	0.498682	2E-8	(women)	0.0236393	[0.015-0.033] unit increase	NR [17166351] (imputed)	N
813	chr6	29919108	29919109	rs9260426	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	6p22.1	HLA-A	rs9260426-A	0.498488	3E-11		0.020854	[0.014-0.027] unit increase	NR [17166351] (imputed)	N
813	chr6	29919778	29919779	rs7747253	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	6p22.1	HLA-A	rs7747253-C	0.499099	1E-33		0.022146	[0.019-0.026] unit increase	NR [13737936] (imputed)	N
813	chr6	29920331	29920332	rs9260489	23417110	Tin A	2013-02-16	Hum Genet	Genome-wide association study identified the human leukocyte antigen region as a novel locus for plasma beta-2 microglobulin.	Beta-2 microglubulin plasma levels	6,728 European ancestry individuals		6p22.1	HLA-A	rs9260489-G	0.58	2E-22		0.04	[0.032-0.048] unit decrease	Affymetrix [2500000] (imputed)	N
813	chr6	29920331	29920332	rs9260489	22190364	Patsopoulos NA	2011-12-01	Ann Neurol	Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.	Multiple sclerosis	5,545 European ancestry cases, 12,153 European ancestry controls	NA	6p22.1	HLA-B	rs9260489-T	0.45	1E-11		1.21	[NR]	Affymetrix, Illumina [2529394]	N
813	chr6	29920421	29920422	rs9260492	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p22.1		rs9260492-T	0.5	3E-19				Affymetrix [10369434] (imputed)	N
813	chr6	29920712	29920713	rs9260500	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p22.1		rs9260500-T	0.5	2E-56				Affymetrix [10369434] (imputed)	N
813	chr6	29921033	29921034	rs28749167	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	286 European ancestry cases, 2,652 European ancestry controls, 76 Han Chinese ancestry cases, 889 Han Chinese ancestry controls, 46 South Asian ancestry cases, 501 South Asian ancestry controls, 683 Turkish ancestry cases, 1,721 Turkish ancestry controls	NA	6p22.1	HLA-G	rs28749167-?	NR	2E-9	(conditional on rs2844678, rs12524487, rs17193507 and rs12526858)	1.43	NR	Illumina [up to 4495750] (imputed)	N
813	chr6	29921172	29921173	rs9260526	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (underestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	6p22.1	NR	rs9260526-?	NR	5E-9		5.864	NR z score increase	Illumina [at least 830937] (imputed)	N
813	chr6	29921459	29921460	rs137886986	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6p22.1	HLA-W	rs137886986-A	0.09576	8E-24		0.039658234	[0.032-0.047] unit increase	Affymetrix [93095623] (imputed)	N
813	chr6	29922666	29922667	rs28780071	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	Intrinsic epigenetic age acceleration	34,461 European ancestry individuals	NA	6p22.1	NR	rs28780071-T	0.3313	4E-9		0.2035	[0.14-0.27] unit increase	Affymetrix, Illumina [7567980] (imputed)	N
813	chr6	29922739	29922740	rs16896742	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NPTX1	5,365 Icelandic ancestry individuals	NA	6p22.1		rs16896742-G	0.4238	6E-28		0.206363	[0.17-0.24] unit decrease	Illumina [7506463] (imputed)	N
813	chr6	29922739	29922740	rs16896742	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	6p22.1	HLA-A	rs16896742-G	0.38	3E-10		0.04	[0.028-0.052] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
813	chr6	29922753	29922754	rs9260603	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p22.1	HLA-W	rs9260603-T	NR	2E-8		0.0159518	[0.01-0.021] unit increase	Affymetrix [319769] (imputed)	N
813	chr6	29922753	29922754	rs9260603	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p22.1	HLA-W	rs9260603-T	NR	4E-8		0.0156092	[0.01-0.021] unit increase	Affymetrix [319769] (imputed)	N
813	chr6	29922981	29922981	rs9280816	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	6p22.1		rs9280816-T	0.537249	2E-8		0.0232259	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
813	chr6	29922981	29922981	rs9280816	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6p22.1		rs9280816-T	0.537249	8E-13		0.0289715	[0.021-0.037] unit increase	NR [11722792] (imputed)	N
813	chr6	29922981	29922981	rs9280816	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	6p22.1		rs9280816-T	0.537257	5E-8		0.0221633	[0.014-0.03] unit increase	NR [11722792] (imputed)	N
813	chr6	29922981	29922981	rs9280816	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very small VLDL	115,082 European ancestry individuals	NA	6p22.1		rs9280816-T	0.537249	3E-9		0.0244552	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
813	chr6	29923085	29923086	rs9260619	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p22.1	NR	rs9260619-?	NR	3E-11		0.2395	[0.17-0.31] unit increase	Illumina [at least 560000] (imputed)	N
813	chr6	29923090	29923091	rs9260620	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	6p22.1	HLA-W	rs9260620-G	0.3359	2E-74		0.06971236	[0.062-0.077] unit decrease	Affymetrix [~ 2500000] (imputed)	N
813	chr6	29923090	29923091	rs9260620	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	6p22.1	HLA-W	rs9260620-G	0.3358	2E-44		0.05337227	[0.046-0.061] unit decrease	Affymetrix [~ 2500000] (imputed)	N
813	chr6	29923090	29923091	rs9260620	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	6p22.1	HLA-W	rs9260620-G	0.3358	4E-40		0.05070884	[0.043-0.058] unit decrease	Affymetrix [~ 2500000] (imputed)	N
813	chr6	29923090	29923091	rs9260620	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	6p22.1	HLA-W	rs9260620-G	0.3358	2E-39		0.05008696	[0.043-0.058] unit decrease	Affymetrix [~ 2500000] (imputed)	N
813	chr6	29923090	29923091	rs9260620	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	6p22.1	HLA-W	rs9260620-G	0.3358	6E-51		0.05759035	[0.05-0.065] unit decrease	Affymetrix [~ 2500000] (imputed)	N
813	chr6	29923090	29923091	rs9260620	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	6p22.1	HLA-W	rs9260620-G	0.3357	4E-53		0.05836372	[0.051-0.066] unit decrease	Affymetrix [~ 2500000] (imputed)	N
813	chr6	29923090	29923091	rs9260620	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	6p22.1	HLA-W	rs9260620-G	0.3358	7E-45		0.05377813	[0.046-0.061] unit decrease	Affymetrix [~ 2500000] (imputed)	N
813	chr6	29923247	29923248	rs7768235	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p22.1	HLA-W	rs7768235-C	0.514186	1E-16		0.022017317	[0.017-0.027] unit increase	Affymetrix [93095623] (imputed)	N
813	chr6	29923247	29923248	rs7768235	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	6p22.1	HLA-W	rs7768235-C	0.514229	5E-14		0.02060967	[0.015-0.026] unit increase	Affymetrix [93095623] (imputed)	N
813	chr6	29923247	29923248	rs7768235	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p22.1		rs7768235-?	NR	7E-25		0.0219262	[0.018-0.026] unit increase	Affymetrix [20259828] (imputed)	N
813	chr6	29923350	29923351	rs2904758	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	6p22.1	HLA-W	rs2904758-A	0.7187	6E-17		0.03315845	[0.025-0.041] unit decrease	Affymetrix [~ 2500000] (imputed)	N
813	chr6	29923422	29923423	rs9260639	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	6p22.1	HLA-W	rs9260639-T	0.1389	2E-14		0.03938988	[0.029-0.05] unit increase	Affymetrix [~ 2500000] (imputed)	N
813	chr6	29923502	29923503	rs2571389	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p22.1		rs2571389-T	0.5	1E-30				Affymetrix [10369434] (imputed)	N
813	chr6	29923553	29923554	rs2571390	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8 on Effector Memory CD8+ T cell	2,912 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p22.1		rs2571390-C	0.82253	6E-22		0.3643	[0.29-0.44] unit increase	Illumina [17945888] (imputed)	N
813	chr6	29923837	29923838	rs2571391	22075330	Granada M	2011-11-08	J Allergy Clin Immunol	A genome-wide association study of plasma total IgE concentrations in the Framingham Heart Study.	IgE levels	6,819 European ancestry individuals	7,809 European ancestry indivduals	6p22.1	HLA-A	rs2571391-C	NR	1E-15		0.06	[NR] unit increase	Affymetrix [2540223] (imputed)	N
813	chr6	29924219	29924220	rs2571392	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	6p22.1	HLA-W	rs2571392-A	0.314446	4E-11		0.023026897	[0.016-0.03] unit increase	Affymetrix [93095623] (imputed)	N
813	chr6	29924293	29924294	rs73725598	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	6p22.1	HLA-W	rs73725598-C	0.0934	2E-9		0.03755279	[0.025-0.05] unit decrease	Affymetrix [~ 2500000] (imputed)	N
813	chr6	29924388	29924389	rs2571394	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TAPBPL	5,368 Icelandic ancestry individuals	NA	6p22.1		rs2571394-G	0.3722	1E-15		0.160938	[0.12-0.2] unit decrease	Illumina [7506463] (imputed)	N
813	chr6	29924439	29924440	rs17179851	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Gynecologic disease	7,975 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs17179851-?		7E-8		1.11	[1.07-1.15]	Illumina [7645193] (imputed)	N
813	chr6	29924439	29924440	rs17179851	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Gynecologic disease	7,315 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs17179851-?		7E-7				Illumina [7645193] (imputed)	N
813	chr6	29924541	29924542	rs1808199	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	6p22.1	HLA-W	rs1808199-T	0.092214	4E-22		0.03959165	[0.032-0.048] unit decrease	Affymetrix [93095623] (imputed)	N
813	chr6	29925102	29925103	rs114193679	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mumps	31,227 European ancestry cases, 54,153 European ancestry controls	NA	6p22.1	HLA-A	rs114193679-G	0.99	2E-17		1.72	[1.62-1.84]	Illumina [at least 560000] (imputed)	N
813	chr6	29925267	29925268	rs17186335	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p22.1	NR	rs17186335-?	NR	3E-8		0.0898	[0.058-0.122] unit decrease	Illumina [at least 560000] (imputed)	N
813	chr6	29925876	29925877	rs62392216	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	57 Italian ancestry cases, 931 Italian ancestry controls	NA	6p22.1	HLA-B	rs62392216-?	NR	1E-11				Illumina [4425173] (imputed)	N
813	chr6	29925876	29925877	rs62392216	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	229 European ancestry cases, 1,088 European ancestry controls	NA	6p22.1	HLA-G	rs62392216-?	NR	3E-11	(conditional on rs12524487)			Illumina [4388215] (imputed)	N
813	chr6	29926376	29926377	rs9260679	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	6p22.1	NR	rs9260679-?	NR	9E-90		20.092	NR z score increase	Illumina [at least 830937] (imputed)	N
813	chr6	29927094	29927095	rs2735085	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	HLA-W	rs2735085-A	NR	5E-8		0.0198962	[0.013-0.027] unit decrease	Affymetrix [321016] (imputed)	N
813	chr6	29927281	29927282	rs114577328	28043905	Nicoletti P	2016-12-30	Gastroenterology	Association of Liver Injury From Specific Drugs, or Groups of Drugs, With Polymorphisms in HLA and Other Genes in a Genome-Wide Association Study.	Drug-induced liver injury	862 European ancestry cases and 10,588 European ancestry controls	NA	6p22.1	MHC	rs114577328-?	0.01	2E-8		2.7	1.9-3.8	Illumina [505740] (imputed)	N
813	chr6	29927721	29927722	rs2571400	34642315	Ferreiro-Iglesias A	2021-10-12	Nat Commun	Germline determinants of humoral immune response to HPV-16 protect against oropharyngeal cancer.	Human papilloma virus 16 positive oropharyngeal cancer	1,078 European ancestry cases, 5,256 European ancestry controls	NA	6p22.1		rs2571400-G	NR	3E-6		1.2905		Illumina [7574753] (imputed)	N
813	chr6	29927721	29927722	rs2571400	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	HLA-W	rs2571400-C	NR	5E-8		5.453	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
813	chr6	29929072	29929073	rs2517690	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p22.1	NR	rs2517690-?	NR	7E-9				Affymetrix [~ 8270000] (imputed)	N
813	chr6	29930938	29930939	rs56262516	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8 on CD28- CD8+ T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p22.1		rs56262516-A	0.27456	1E-11		0.23	[0.16-0.3] unit increase	Illumina [17954496] (imputed)	N
813	chr6	29930938	29930939	rs56262516	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8 on CD28+ CD45RA- CD8+ T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p22.1		rs56262516-A	0.27456	7E-13		0.2531	[0.18-0.32] unit increase	Illumina [17954496] (imputed)	N
813	chr6	29931344	29931345	rs192543598	31066027	Nicoletti P	2019-05-07	Clin Pharmacol Ther	Shared genetic risk factors across carbamazepine-induced hypersensitivity reactions.	Carbamazepine-induced serious cutaneous adverse reaction	43 European ancestry cases, 10,701 European ancestry controls	NA	6p22.1	NR	rs192543598-G	0.01	2E-12		18.11	[8.03-40.88]	Illumina [5271349] (imputed)	N
813	chr6	29931904	29931905	rs2517683	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	6p22.1	HLA-W	rs2517683-C	NR	5E-10		0.0183528	[0.013-0.024] unit decrease	Affymetrix [321788] (imputed)	N
813	chr6	29932291	29932292	rs2523933	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	HLA-W	rs2523933-T	NR	2E-9		6.01	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
813	chr6	29933224	29933225	rs2517678	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	6p22.1	intergenic	rs2517678-T	0.3811	2E-9		0.02249725	[0.015-0.03] unit increase	Affymetrix [~ 2500000] (imputed)	N
813	chr6	29933260	29933261	rs6457109	33574277	Kawai Y	2021-02-11	NPJ Genom Med	Mapping of susceptible variants for cold medicine-related Stevens-Johnson syndrome by whole-genome resequencing.	Cold medicine-related Stevens-Johnson syndrome/toxic epidermal necrolysis (SJS/TEN) with severe ocular complications	133 Japanese ancestry cases, 418 Japanese ancestry controls	NA	6p22.1		rs6457109-C	0.2519	3E-16		4.516		Illumina [7608150]	N
813	chr6	29934021	29934022	rs6914699	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	MICD	rs6914699-T	NR	3E-8		5.569	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
813	chr6	29934162	29934163	rs6935053	23511034	Yang SK	2013-04-01	Inflamm Bowel Dis	Genome-wide association study of ulcerative colitis in Koreans suggests extensive overlapping of genetic susceptibility with Caucasians.	Ulcerative colitis	388 Korean ancestry cases, 739 Korean ancestry controls	417 Korean ancestry cases, 732 Korean ancestry controls	6p22.1	HCG9	rs6935053-?	NR	2E-6	(Conditioned on rs9271366)			Illumina [581060]	N
813	chr6	29935249	29935250	rs3893464	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p22.1		rs3893464-G	0.514	7E-43				Affymetrix [10369434] (imputed)	N
813	chr6	29935249	29935250	rs3893464	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	6p22.1	MICD	rs3893464-A	0.4884	7E-54		0.05503962	[0.048-0.062] unit decrease	Affymetrix [~ 2500000] (imputed)	N
813	chr6	29935249	29935250	rs3893464	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	6p22.1	MICD	rs3893464-A	0.4883	8E-55		0.05548136	[0.049-0.062] unit decrease	Affymetrix [~ 2500000] (imputed)	N
813	chr6	29935249	29935250	rs3893464	21900946	Nakabayashi K	2011-09-08	J Hum Genet	Identification of independent risk loci for Graves' disease within the MHC in the Japanese population.	Graves' disease	1,119 Japanese ancestry cases, 2,718 Japanese ancestry controls	432 Japanese ancestry cases, 1,157 Japanese ancestry controls	6p22.1	MHC	rs3893464-G	0.36	2E-20		1.53	[1.39-1.67]	Perlegen [268068]	N
813	chr6	29935404	29935405	rs3893463	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	MICD	rs3893463-T	NR	2E-8		5.65	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
813	chr6	29935720	29935721	rs56402621	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	6p22.1	HLA-A, ZNRD1-AS1	rs56402621-T	0.0181	2E-7		0.0330166	[0.021-0.045] unit increase	Affymetrix [11880941] (imputed)	N
813	chr6	29936631	29936632	rs9260765	33143745	Andlauer TFM	2020-11-04	BMC Med	Treatment- and population-specific genetic risk factors for anti-drug antibodies against interferon-beta: a GWAS.	Binding antibody response to interferon beta therapy in multiple sclerosis (antibody levels; all treatment preparations)	up to 2,000 German and Swedish ancestry individuals	up to 757 German and Swedish ancestry individuals	6p22.1		rs9260765-C	0.45	5E-11		0.17372645	[0.12-0.23] unit increase	Illumina [8550834] (imputed)	N
813	chr6	29937335	29937339	rs60131261	27723757	Jin Y	2016-11-01	Nat Genet	Genome-wide association studies of autoimmune vitiligo identify 23 new risk loci and highlight key pathways and regulatory variants.	Vitiligo	2,853 European ancestry cases and 37,405 European ancestry controls	1,827 European ancestry cases and 2,181 European ancestry controls	6p22.1	HLA-A	rs60131261-?	NR	2E-66		1.535	NR	Illumina [8966411] (imputed)	N
813	chr6	29937554	29937555	rs1061539	30566020	Fukaya E	2018-12-01	Circulation	Clinical and Genetic Determinants of Varicose Veins.	Varicose veins	9,577 British ancestry cases, 327,959 British ancestry controls	NA	6p22.1	NR	rs1061539-C	0.83	2E-9		0.113	[0.076-0.15] unit decrease	Affymetrix [10972371] (imputed)	N
813	chr6	29937783	29937784	rs2523972	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p22.1	MICD	rs2523972-C	NR	1E-11		0.0191491	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
813	chr6	29937783	29937784	rs2523972	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p22.1	MICD	rs2523972-C	NR	1E-10		0.0182302	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
813	chr6	29937783	29937784	rs2523972	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	MICD	rs2523972-C	NR	1E-12		0.0200168	[0.014-0.026] unit decrease	Affymetrix [321016] (imputed)	N
813	chr6	29937923	29937924	rs1061535	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	6p22.1	NR	rs1061535-?	NR	1E-6		0.0535	[0.032-0.075] unit decrease	Illumina [at least 560000] (imputed)	N
813	chr6	29937976	29937977	rs2517671	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	6p22.1	HCG9	rs2517671-G	0.419267	3E-22		0.023432834	[0.019-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
813	chr6	29939147	29939148	rs2523968	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p22.1	NR	rs2523968-A	0.429	4E-12	(conditional)	1.132	[1.1-1.17]	Illumina [11270530] (imputed)	N
813	chr6	29939579	29939580	rs2523961	29784950	Sawai H	2018-05-21	Sci Rep	Genome-wide association study identified new susceptible genetic variants in HLA class I region for hepatitis B virus-related hepatocellular carcinoma.	Hepatocellular carcinoma in hepatitis B infection	473 Japanese ancestry chronic hepatitis and hepatocellular carcinoma cases, 516 Japanese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma	153 Japanese ancestry chronic hepatitis and hepatocellular carcinoma cases, 614 Japanese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma, 94 Chinese ancestry chronic hepatitis and hepatocellular carcinoma cases, 187 Chinese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma, 185 Thai ancestry chronic hepatitis and hepatocellular carcinoma cases, 198 Thai ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma	6p22.1	HLA	rs2523961-?	NR	6E-11		1.91	[1.56-2.37] Japanese	Affymetrix [447830]	N
813	chr6	29939579	29939580	rs2523961	29784950	Sawai H	2018-05-21	Sci Rep	Genome-wide association study identified new susceptible genetic variants in HLA class I region for hepatitis B virus-related hepatocellular carcinoma.	Hepatocellular carcinoma in hepatitis B infection	473 Japanese ancestry chronic hepatitis and hepatocellular carcinoma cases, 516 Japanese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma	153 Japanese ancestry chronic hepatitis and hepatocellular carcinoma cases, 614 Japanese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma, 94 Chinese ancestry chronic hepatitis and hepatocellular carcinoma cases, 187 Chinese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma, 185 Thai ancestry chronic hepatitis and hepatocellular carcinoma cases, 198 Thai ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma	6p22.1	HLA	rs2523961-?	NR	6E-10	(Japanese)	1.91	[1.56-2.37]	Affymetrix [447830]	N
813	chr6	29941430	29941431	rs9295825	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p22.1	NR	rs9295825-?	NR	3E-18		0.1197	[0.092-0.147] unit increase	Illumina [at least 560000] (imputed)	N
813	chr6	29941812	29941813	rs444252	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Strep throat	52,487 European ancestry cases, 22,017 European ancestry controls	NA	6p22.1	NR	rs444252-?	NR	1E-6		0.0267	[0.016-0.037] unit increase	Illumina [at least 560000] (imputed)	N
813	chr6	29941942	29941943	rs2523946	32912934	Li M	2020-09-10	J Am Soc Nephrol	Genome-Wide Meta-Analysis Identifies Three Novel Susceptibility Loci and Reveals Ethnic Heterogeneity of Genetic Susceptibility for IgA Nephropathy.	IgA nephropathy	2,628 Chinese ancestry cases, 11,563 Chinese ancestry controls	6,879 Han Chinese ancestry cases, 9,019 Han Chinese ancestry controls, 1,039 Italian ancestry cases, 1,289 Italian ancestry controls	6p22.1	HLA-A	rs2523946-C	0.5077594888869671	2E-8	(East Asian)	1.2170416	[1.13667796674979-1.3030869883916]	NR [3611808] (imputed)	N
813	chr6	29941942	29941943	rs2523946	26028593	Li M	2015-06-01	Nat Commun	Identification of new susceptibility loci for IgA nephropathy in Han Chinese.	IgA nephropathy	1,434 Han Chinese ancestry cases, 10,661 Han Chinese ancestry controls	6,879 Han Chinese ancestry cases, 9,019 Han Chinese ancestry controls	6p22.1	NR	rs2523946-C	0.511	5E-11		1.317	[1.217-1.426]	Illumina [3792949] (imputed)	N
813	chr6	29941942	29941943	rs2523946	22197929	Yu XQ	2011-12-25	Nat Genet	A genome-wide association study in Han Chinese identifies multiple susceptibility loci for IgA nephropathy.	IgA nephropathy	1,434 Han Chinese ancestry cases, 4,270 Han Chinese ancestry controls	2,703 Han Chinese ancestry cases, 3,464 Han Chinese ancestry controls	6p22.1	HLA-A	rs2523946-C	0.50	2E-11		1.21	[1.15-1.28]	Illumina [444882]	N
813	chr6	29942082	29942083	rs3823355	20410501	Jin Y	2010-04-21	N Engl J Med	Variant of TYR and autoimmunity susceptibility loci in generalized vitiligo.	Vitiligo	1,392 European ancestry cases, 2,629 European ancestry controls	647 European ancestry cases, 1,056 European ancestry controls, 183 European ancestry trios, 1,383 European ancestry individuals from 332 families	6p22.1	HLA-A, HCG9	rs3823355-T	0.29	9E-23		1.5	[1.39-1.63]	Illumina [520460]	N
813	chr6	29942385	29942386	rs35835721	33574277	Kawai Y	2021-02-11	NPJ Genom Med	Mapping of susceptible variants for cold medicine-related Stevens-Johnson syndrome by whole-genome resequencing.	Cold medicine-related Stevens-Johnson syndrome/toxic epidermal necrolysis (SJS/TEN) with severe ocular complications	133 Japanese ancestry cases, 418 Japanese ancestry controls	NA	6p22.1		rs35835721-G	0.4624	8E-15		3.091		Illumina [7608150]	N
813	chr6	29942673	29942674	rs1960063	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	HCG9	rs1960063-A	NR	4E-10		0.0213735	[0.015-0.028] unit decrease	Affymetrix [323858] (imputed)	N
813	chr6	29942673	29942674	rs1960063	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	HCG9	rs1960063-A	NR	4E-10		0.0213569	[0.015-0.028] unit decrease	Affymetrix [127266] (imputed)	N
813	chr6	29943066	29943067	rs6904029	24939585	Fransen E	2014-06-18	Eur J Hum Genet	Genome-wide association analysis demonstrates the highly polygenic character of age-related hearing impairment.	Age-related hearing impairment	1,489 European ancestry individuals	NA	6p22.1	HLA-A29.1, HCG9	rs6904029-?		3E-6	(PC3)	0.0464	[NR] unit decrease	Illumina [4167292] (imputed)	N
813	chr6	29943655	29943656	rs2394250	23749187	Cortes A	2013-07-01	Nat Genet	Identification of multiple risk variants for ankylosing spondylitis through high-density genotyping of immune-related loci.	Ankylosing spondylitis	9,069 European ancestry cases, 1,550 East Asian ancestry cases, 13,578 European ancestry controls, 1,567 East Asian ancestry controls	NA	6p22.1	HLA-A*0201	rs2394250-?	0.421	8E-51	(EA)	1.541		Illumina [128935]	N
813	chr6	29943687	29943688	rs2394251	33269293	Kannambath S	2020-10-16	Open Forum Infect Dis	Genome-Wide Association Study Identifies Novel Colony Stimulating Factor 1 Locus Conferring Susceptibility to Cryptococcosis in Human Immunodeficiency Virus-Infected South Africans.	Cryptococcosis in HIV infection	319 South African ancestry cases, 399 South African ancestry controls	NA	6p22.1	HLA-H	rs2394251-?	NR	9E-6		0.7439	[NR]	Illumina [2686126] (imputed)	N
813	chr6	29943714	29943715	rs3823363	34642315	Ferreiro-Iglesias A	2021-10-12	Nat Commun	Germline determinants of humoral immune response to HPV-16 protect against oropharyngeal cancer.	Oropharynx cancer and human papilloma virus 16 negative oropharyngeal cancer	2,359 European ancestry cases, 565 European ancestry controls	NA	6p22.1		rs3823363-A	NR	1E-7		0.8222		Illumina [up to 7574753] (imputed)	N
813	chr6	29944457	29944458	rs3823379	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	6p22.1	HLA-A	rs3823379-T	0.487762	1E-16		0.0171763	[0.013-0.021] unit decrease	Affymetrix [NR] (imputed)	N
813	chr6	29944542	29944543	rs2735075	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p22.1		rs2735075-T	0.592	2E-18				Affymetrix [10369434] (imputed)	N
813	chr6	29945948	29945949	rs3132685	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small HDL	115,082 European ancestry individuals	NA	6p22.1		rs3132685-G	0.865719	1E-10		0.0393348	[0.027-0.051] unit increase	NR [11722792] (imputed)	N
813	chr6	29945948	29945949	rs3132685	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	6p22.1		rs3132685-G	0.865719	6E-9		0.0355211	[0.024-0.047] unit decrease	NR [11722792] (imputed)	N
813	chr6	29945948	29945949	rs3132685	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small HDL	115,082 European ancestry individuals	NA	6p22.1		rs3132685-G	0.865719	5E-12		0.0418299	[0.03-0.054] unit increase	NR [11722792] (imputed)	N
813	chr6	29945948	29945949	rs3132685	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-3 fatty acid levels	115,006 European ancestry individuals	NA	6p22.1		rs3132685-G	0.865725	2E-11		0.0394662	[0.028-0.051] unit increase	NR [11722792] (imputed)	N
813	chr6	29945948	29945949	rs3132685	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Monounsaturated fatty acid levels	115,006 European ancestry individuals	NA	6p22.1		rs3132685-G	0.865725	2E-8		0.033954	[0.022-0.046] unit increase	NR [11722792] (imputed)	N
813	chr6	29945948	29945949	rs3132685	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small HDL	115,082 European ancestry individuals	NA	6p22.1		rs3132685-G	0.865719	5E-10		0.0372621	[0.026-0.049] unit increase	NR [11722792] (imputed)	N
813	chr6	29945948	29945949	rs3132685	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p22.1	NR	rs3132685-A	0.1302	2E-13		0.0131	[0.0096-0.0166] unit decrease	NR [7666894] (imputed)	N
813	chr6	29955099	29955100	rs17180647	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p22.1	NR	rs17180647-?	NR	4E-7		0.3884	[0.24-0.54] unit decrease	Illumina [at least 560000] (imputed)	N
813	chr6	29959999	29960000	rs7749944	30850646	Tziotzios C	2019-03-08	Nat Commun	Genome-wide association study in frontal fibrosing alopecia identifies four susceptibility loci including HLA-B*07:02.	Frontal fibrosing alopecia	1,016 European ancestry cases, 4,145 European ancestry controls		6p22.1	NR	rs7749944-?	0.006	8E-42		10.06	[7.2-14.1]	Illumina [~ 8000000] (imputed)	N
813	chr6	29964828	29964829	rs12110437	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	76 Han Chinese ancestry cases, 889 Han Chinese ancestry controls	NA	6p22.1	HLA-G	rs12110437-?	NR	2E-10				Illumina [3403929] (imputed)	N
813	chr6	29970588	29970589	rs7758512	20041166	Fellay J	2009-12-24	PLoS Genet	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	6p22.1	HLA-A, ZNRD1, RNF39	rs7758512-?	NR	2E-8	(progression)			Illumina [NR]	N
813	chr6	29970959	29970960	rs3094146	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total concentration of lipoprotein particles	115,082 European ancestry individuals	NA	6p22.1		rs3094146-G	0.871463	2E-9		0.0352048	[0.024-0.047] unit increase	NR [11722792] (imputed)	N
813	chr6	29970959	29970960	rs3094146	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Polyunsaturated fatty acid levels	115,006 European ancestry individuals	NA	6p22.1		rs3094146-G	0.871472	2E-13		0.0443955	[0.033-0.056] unit increase	NR [11722792] (imputed)	N
813	chr6	29970959	29970960	rs3094146	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6p22.1		rs3094146-G	0.871463	1E-8		0.0355971	[0.023-0.048] unit decrease	NR [11722792] (imputed)	N
813	chr6	29970959	29970960	rs3094146	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphoglycerides levels	115,006 European ancestry individuals	NA	6p22.1		rs3094146-G	0.871472	3E-10		0.0370038	[0.026-0.049] unit increase	NR [11722792] (imputed)	N
813	chr6	29970959	29970960	rs3094146	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphatidylcholine levels	115,006 European ancestry individuals	NA	6p22.1		rs3094146-G	0.871472	3E-9		0.0343894	[0.023-0.046] unit increase	NR [11722792] (imputed)	N
813	chr6	29970959	29970960	rs3094146	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	6p22.1		rs3094146-G	0.871463	5E-10		0.0351913	[0.024-0.046] unit increase	NR [11722792] (imputed)	N
813	chr6	29970959	29970960	rs3094146	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium HDL particles	115,082 European ancestry individuals	NA	6p22.1		rs3094146-G	0.871463	2E-11		0.0384568	[0.027-0.05] unit increase	NR [11722792] (imputed)	N
813	chr6	29970959	29970960	rs3094146	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of HDL particles	115,082 European ancestry individuals	NA	6p22.1		rs3094146-G	0.871463	4E-10		0.0365016	[0.025-0.048] unit increase	NR [11722792] (imputed)	N
813	chr6	29970959	29970960	rs3094146	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	6p22.1		rs3094146-G	0.871463	2E-9		0.034562	[0.023-0.046] unit increase	NR [11722792] (imputed)	N
813	chr6	29970959	29970960	rs3094146	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein A1 levels	115,082 European ancestry individuals	NA	6p22.1		rs3094146-G	0.871463	9E-11		0.036855	[0.026-0.048] unit increase	NR [11722792] (imputed)	N
813	chr6	29970959	29970960	rs3094146	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p22.1	ZNRD1-AS1	rs3094146-C	NR	4E-10		0.0289428	[0.02-0.038] unit decrease	Affymetrix [323858] (imputed)	N
813	chr6	29970959	29970960	rs3094146	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Help-seeking from a GP (without major depressive disorder symptoms)	8,632 British ancestry cases, 49,493 British ancestry controls	NA	6p22.1	NR	rs3094146-G	0.87	5E-8		1.1494253	[1.10-1.20]	NR [5276842] (imputed)	N
813	chr6	29970959	29970960	rs3094146	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p22.1	NR	rs3094146-C	0.1057	7E-7	(EA)	0.0543	[0.033-0.076] unit decrease	Illumina [~ 11800000] (imputed)	N
813	chr6	29973924	29973925	rs4313034	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p22.1		rs4313034-T	0.825373	2E-18		1.048594	[1.04-1.06]	Affymetrix, Illumina [9851866] (imputed)	N
813	chr6	29973924	29973925	rs4313034	21900946	Nakabayashi K	2011-09-08	J Hum Genet	Identification of independent risk loci for Graves' disease within the MHC in the Japanese population.	Graves' disease	1,119 Japanese ancestry cases, 2,718 Japanese ancestry controls	432 Japanese ancestry cases, 1,157 Japanese ancestry controls	6p22.1	MHC	rs4313034-T	0.83	2E-15		1.67	[1.47-1.90]	Perlegen [268068]	N
813	chr6	29977868	29977869	rs886997	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Asthma	13,015 East Asian ancestry cases, 162,933 East Asian ancestry controls	NA	6p22.1		rs886997-T	0.201391947	2E-10		0.10704092	[0.074-0.14] unit increase	Illumina [13429513] (imputed)	N
813	chr6	29978351	29978352	rs4713281	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p22.1	HLA-J, NCRNA00171	rs4713281-A	0.28	1E-6	(EA)	1.97	[1.49-2.59]	Illumina [up to 547389]	N
813	chr6	29986323	29986324	rs3115631	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	ZNRD1-AS1	rs3115631-A	NR	4E-17		0.0400652	[0.031-0.049] unit decrease	Affymetrix [323858] (imputed)	N
813	chr6	29986323	29986324	rs3115631	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	ZNRD1-AS1	rs3115631-A	NR	2E-16		0.0390685	[0.03-0.048] unit decrease	Affymetrix [127266] (imputed)	N
813	chr6	29986323	29986324	rs3115631	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Major depressive disorder (lifetime)	16,301 British ancestry cases, 50,870 British ancestry controls	NA	6p22.1	NR	rs3115631-?	NR	4E-7		1.1037527	[1.06-1.15]	NR [5276842] (imputed)	N
813	chr6	29986323	29986324	rs3115631	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Help-seeking from a GP	113,262 British ancestry cases, 219,360 British ancestry controls	NA	6p22.1	NR	rs3115631-T	0.874	3E-13		1.059322	[1.04-1.08]	NR [5276842] (imputed)	N
813	chr6	30001702	30001703	rs62388754	30850646	Tziotzios C	2019-03-08	Nat Commun	Genome-wide association study in frontal fibrosing alopecia identifies four susceptibility loci including HLA-B*07:02.	Frontal fibrosing alopecia	1,016 European ancestry cases, 4,145 European ancestry controls		6p22.1	NR	rs62388754-?	0.058	5E-32		2.76	[2.33-3.27]	Illumina [~ 8000000] (imputed)	N
813	chr6	30005753	30005754	rs4711207	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Allergic rhinitis	4,387 European ancestry cases, 471,273 European ancestry controls, 7,897 East Asian ancestry cases, 153,666 East Asian ancestry controls	NA	6p22.1		rs4711207-A	NR	2E-8		0.087	[0.057-0.117] unit decrease	Affymetrix, Illumina [25843170] (imputed)	N
813	chr6	30005753	30005754	rs4711207	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p22.1	NR	rs4711207-A	0.366	3E-19	(IFNAR2_of_CD20p)			Illumina [5084123] (imputed)	N
813	chr6	30008745	30008746	rs3910312	35232999	Garcia-Etxebarria K	2022-03-01	Sci Rep	Local genetic variation of inflammatory bowel disease in Basque population and its effect in risk prediction.	Ulcerative colitis	208 European ancestry cases, 935 European ancestry controls	NA	6p22.1		rs3910312-C	0.255	7E-7		1.8		Illumina [5409651] (imputed)	N
813	chr6	30013886	30013887	rs9261224	31217265	Sliz E	2019-06-19	J Med Genet	Genome-wide association study identifies seven novel loci associating with circulating cytokines and cell adhesion molecules in Finns.	Interleukin-1-beta levels	13,577 Finnish ancestry individuals	NA	6p22.1	HLA	rs9261224-T	0.035	1E-9		0.261	unit increase	Illumina [NR] (imputed)	N
814	chr6	30017070	30017071	rs6917603	31217265	Sliz E	2019-06-19	J Med Genet	Genome-wide association study identifies seven novel loci associating with circulating cytokines and cell adhesion molecules in Finns.	Interleukin-1-beta levels	13,577 Finnish ancestry individuals	NA	6p22.1	HLA	rs6917603-C	0.251	2E-12		0.163	unit decrease	Illumina [NR] (imputed)	N
814	chr6	30017070	30017071	rs6917603	22286219	Kettunen J	2012-01-29	Nat Genet	Genome-wide association study identifies multiple loci influencing human serum metabolite levels.	Lipid metabolism phenotypes	8,330 European ancestry individuals	NA	6p22.1	PPP1R11	rs6917603-?	NR	3E-29	(XXL-VLDL-P)	0.24	[0.2-0.28] unit decrease	Illumina [~ 7700000] (imputed)	N
814	chr6	30023078	30023079	rs9261259	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	ZNRD1-AS1	rs9261259-C	NR	2E-16		0.0319539	[0.024-0.04] unit decrease	Affymetrix [127266] (imputed)	N
814	chr6	30025502	30025503	rs259919	32276964	Shete S	2020-04-10	Cancer Res	A genome-wide association study identifies two novel susceptible regions for squamous cell carcinoma of the head and neck.	Head and neck squamous cell carcinoma	2,171 European ancestry cases, 4,493 European ancestry controls	5,205 European ancestry cases, 3,232 European ancestry controls	6p22.1	ZNRD1-AS1	rs259919-A	0.28	3E-9		1.17	[1.11-1.24]	Illumina [7858089] (imputed)	N
814	chr6	30025502	30025503	rs259919	20041166	Fellay J	2009-12-24	PLoS Genet	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	6p22.1	ZNRD1, C6orf12	rs259919-?	NR	3E-7	(setpoint)			Illumina [NR]	N
814	chr6	30030113	30030114	rs9261269	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p22.1	ZintergenicD1	rs9261269-A		4E-32		0.038	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
814	chr6	30032521	30032522	rs8321	23453885	Smoller JW	2013-02-27	Lancet	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NA	6p22.1	MHC region	rs8321-?	NR	8E-9	(5 degree of freedom test)	1.081	[1.04-1.12]	NR [1252901] (imputed)	N
814	chr6	30032521	30032522	rs8321	19115949	Limou S	2009-01-01	J Infect Dis	Genomewide association study of an AIDS-nonprogression cohort emphasizes the role played by HLA genes (ANRS Genomewide Association Study 02).	AIDS progression	275 European ancestry seropositive non-progressors, 86 European ancestry seropositive rapid progressors, 1,352 European ancestry seronegative controls	(see Fellay 2007)	6p22.1	ZNRD1, RNF39	rs8321-G	NR	5E-7				Illumina [291119]	N
814	chr6	30035340	30035341	rs9261281	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p22.1		rs9261281-?	NR	1E-9		0.0377761	[0.026-0.05] unit increase	Affymetrix [20259828] (imputed)	N
814	chr6	30037989	30037990	rs6539	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	6p22.1	NR	rs6539-?	NR	3E-6		0.0618	[0.036-0.088] unit increase	Illumina [at least 560000] (imputed)	N
814	chr6	30039239	30039240	rs2301753	26534935	Weng L	2015-11-03	Physiol Genomics	Genetic loci associated with nonobstructive coronary artery disease in Caucasian women.	Nonobstructive coronary artery disease	332 European ancestry female cases, 1,003 European ancestry female controls	NA	6p22.1	RNF39	rs2301753-?	0.883	7E-7		2.5	[1.75-3.57]	Illumina [52371]	N
814	chr6	30040290	30040291	rs10947050	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Chickenpox	107,769 European ancestry cases, 15,982 European ancestry controls	NA	6p22.1	NR	rs10947050-?	NR	1E-10		0.0904	[0.063-0.118] unit decrease	Illumina [at least 560000] (imputed)	N
814	chr6	30042999	30043000	rs142979264	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs142979264-?		6E-8		1.06	[1.04-1.09]	Illumina [7645193] (imputed)	N
814	chr6	30042999	30043000	rs142979264	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs142979264-?		7E-9		1.84	[1.50-2.26]	Illumina [7645193] (imputed)	N
814	chr6	30044387	30044388	rs3132682	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	6p22.1	RNF39	rs3132682-C	0.5898	2E-30		0.04162196	[0.035-0.049] unit increase	Affymetrix [~ 2500000] (imputed)	N
814	chr6	30045198	30045199	rs1150735	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	RNF39	rs1150735-A	NR	5E-8		5.462	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
814	chr6	30045997	30045998	rs1245372	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of linoleic acid to total fatty acids	115,006 European ancestry individuals	NA	6p22.1		rs1245372-A	0.830801	3E-8		0.029543	[0.019-0.04] unit decrease	NR [11722792] (imputed)	N
814	chr6	30052941	30052942	rs1264712	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	AL669914.1	rs1264712-A	NR	9E-17		0.0323321	[0.025-0.04] unit decrease	Affymetrix [323858] (imputed)	N
814	chr6	30052941	30052942	rs1264712	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p22.1	AL669914.1	rs1264712-A	NR	4E-10		0.0241409	[0.017-0.032] unit decrease	Affymetrix [323858] (imputed)	N
814	chr6	30055812	30055813	rs142292417	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	6p22.1		rs142292417-T	0.984003	1E-8		0.0906224	[0.059-0.122] unit increase	NR [11722792] (imputed)	N
814	chr6	30060040	30060041	rs3132681	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p22.1		rs3132681-C	0.603	1E-38				Affymetrix [10369434] (imputed)	N
814	chr6	30060040	30060041	rs3132681	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	ENSG00000252901	rs3132681-A	NR	2E-8		5.598	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
814	chr6	30061360	30061361	rs9261387	28394258	Wild PS	2017-04-10	J Clin Invest	Large-scale genome-wide analysis identifies genetic variants associated with cardiac structure and function.	Isovolumetric relaxation time	21,852 European ancestry individuals	14,787 European ancestry individuals	6p22.1	TRIM31	rs9261387-C	0.92	7E-7		0.003	[0.001-0.005] unit increase	Affymetrix, Illumina [at least 283291] (imputed)	N
814	chr6	30063673	30063674	rs1264705	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium HDL	115,082 European ancestry individuals	NA	6p22.1		rs1264705-G	0.868792	2E-12		0.0396576	[0.029-0.051] unit increase	NR [11722792] (imputed)	N
814	chr6	30065148	30065149	rs1156533	33888516	Zheng T	2021-04-22	Gut	Genome-wide analysis of 944 133 individuals provides insights into the etiology of haemorrhoidal disease.	Haemorrhoidal disease	218,920 European ancestry cases, 725,213 European ancestry controls	NA	6p22.1	TRIM31	rs1156533-?	0.2952	2E-8		0.98	[0.97-0.98]	Affymetrix, Illumina [8494288] (imputed)	N
814	chr6	30065542	30065543	rs17187854	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	6p22.1	intergenic	rs17187854-T	0.0032	3E-12		0.2201749	[0.16-0.28] unit decrease	Affymetrix [~ 2500000] (imputed)	N
814	chr6	30066030	30066031	rs916570	31272903	Sunadome H	2019-07-01	Allergol Int	Correlation between eosinophil count, its genetic background and body mass index: The Nagahama Study.	Eosinophil counts	4,650 East Asian ancestry individuals	NA	6p22.1	NR	rs916570-G	0.19	1E-7		0.1384	NR unit increase	Illumina [103680] (imputed)	N
814	chr6	30066030	30066031	rs916570	31272903	Sunadome H	2019-07-01	Allergol Int	Correlation between eosinophil count, its genetic background and body mass index: The Nagahama Study.	Eosinophil counts	4,206 East Asian ancestry individuals	NA	6p22.1	NR	rs916570-G	0.19	3E-7		0.1428	NR unit increase	Illumina [103680] (imputed)	N
814	chr6	30066993	30066995	rs143211693	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	6p22.1	Intergenic	rs143211693-?	NR	5E-6		0.0195207	[0.011-0.028] unit increase	Illumina [13519193] (imputed)	N
814	chr6	30066993	30066995	rs143211693	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p22.1	Intergenic	rs143211693-?	NR	2E-6		0.0186889	[0.011-0.026] unit increase	Illumina [13520550] (imputed)	N
814	chr6	30066993	30066995	rs143211693	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	6p22.1	Intergenic	rs143211693-?	NR	4E-9		0.026814	[0.018-0.036] unit increase	Illumina [13520550] (imputed)	N
814	chr6	30067567	30067568	rs1264697	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	76 Han Chinese ancestry cases, 889 Han Chinese ancestry controls	NA	6p22.1	TRIM31	rs1264697-?	NR	1E-8	(conditional on rs12110437)			Illumina [3403929] (imputed)	N
814	chr6	30068612	30068613	rs13214608	33831438	Williams JE	2021-04-05	Genomics	Key genetic variants associated with variation of milk oligosaccharides from diverse human populations.	Human milk oligosaccharide concentration (lacto-N-fucopentaose III) in non-secretors	90 European, Sub-Saharan African, Hispanic or unknown ancestry individuals	NA	6p22.1		rs13214608-?	NR	3E-11				Illumina [1128286]	N
814	chr6	30069981	30069982	rs1111180	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	6p22.1	TRIM31-AS1	rs1111180-C	0.5667	4E-37		0.04561007	[0.039-0.053] unit decrease	Affymetrix [~ 2500000] (imputed)	N
814	chr6	30069981	30069982	rs1111180	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	6p22.1	TRIM31-AS1	rs1111180-C	0.5666	2E-35		0.04474978	[0.038-0.052] unit decrease	Affymetrix [~ 2500000] (imputed)	N
814	chr6	30070936	30070937	rs1110446	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6p22.1		rs1110446-?	NR	3E-6		1.05914	[1.04-1.08]	NR [685523]	N
814	chr6	30070936	30070937	rs1110446	29784950	Sawai H	2018-05-21	Sci Rep	Genome-wide association study identified new susceptible genetic variants in HLA class I region for hepatitis B virus-related hepatocellular carcinoma.	Hepatocellular carcinoma in hepatitis B infection	473 Japanese ancestry chronic hepatitis and hepatocellular carcinoma cases, 516 Japanese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma	153 Japanese ancestry chronic hepatitis and hepatocellular carcinoma cases, 614 Japanese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma, 94 Chinese ancestry chronic hepatitis and hepatocellular carcinoma cases, 187 Chinese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma, 185 Thai ancestry chronic hepatitis and hepatocellular carcinoma cases, 198 Thai ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma	6p22.1	HLA	rs1110446-?	NR	9E-13		1.93	[1.57-2.37] Japanese	Affymetrix [447830]	N
814	chr6	30070936	30070937	rs1110446	29784950	Sawai H	2018-05-21	Sci Rep	Genome-wide association study identified new susceptible genetic variants in HLA class I region for hepatitis B virus-related hepatocellular carcinoma.	Hepatocellular carcinoma in hepatitis B infection	473 Japanese ancestry chronic hepatitis and hepatocellular carcinoma cases, 516 Japanese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma	153 Japanese ancestry chronic hepatitis and hepatocellular carcinoma cases, 614 Japanese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma, 94 Chinese ancestry chronic hepatitis and hepatocellular carcinoma cases, 187 Chinese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma, 185 Thai ancestry chronic hepatitis and hepatocellular carcinoma cases, 198 Thai ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma	6p22.1	HLA	rs1110446-?	NR	3E-10	(Japanese)	1.93	[1.57-2.37]	Affymetrix [447830]	N
814	chr6	30071329	30071330	rs1116221	32771030	Tangtanatakul P	2020-08-08	Arthritis Res Ther	Meta-analysis of genome-wide association study identifies FBN2 as a novel locus associated with systemic lupus erythematosus in Thai population.	Systemic lupus erythematosus	487 Thai cases, 1,606 Thai controls	405 Thai cases, 1,590 Thai controls	6p22.1	TRIM31	rs1116221-A	0.08	3E-6		1.594	[NR]	Illumina [421909] (imputed)	N
814	chr6	30072624	30072625	rs3094136	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p22.1	NR	rs3094136-C	0.44	2E-6	(IFNAR2_of_CD4p_T)			Illumina [5084123] (imputed)	N
814	chr6	30072807	30072808	rs111537560	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mumps	31,227 European ancestry cases, 54,153 European ancestry controls	NA	6p22.1	NR	rs111537560-?	NR	5E-16		0.5917	[0.45-0.74] unit increase	Illumina [at least 560000] (imputed)	N
814	chr6	30073194	30073195	rs3132680	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6p22.1	RNF39	rs3132680-?	NR	7E-6	(SM 18:0)	0.17183183	[0.097-0.247] unit decrease	Affymetrix [at least 2500000] (imputed)	N
814	chr6	30073258	30073259	rs2517664	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p22.1		rs2517664-T	0.816537	9E-13		1.0407012	[1.03-1.05]	Affymetrix, Illumina [9851866] (imputed)	N
814	chr6	30073258	30073259	rs2517664	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	TRIM31-AS1	rs2517664-T	NR	1E-8		5.707	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
814	chr6	30073429	30073430	rs6915823	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	6p22.1	NR	rs6915823-?	NR	1E-23		10.046	NR z score decrease	Illumina [at least 830937] (imputed)	N
814	chr6	30073775	30073776	rs7767188	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	6p22.1	NR	rs7767188-A	0.21	2E-8		1.06	[1.04-1.08]	Illumina [20370935] (imputed)	N
814	chr6	30073846	30073847	rs2844795	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total phospholipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	6p22.1		rs2844795-C	0.480583	2E-9		0.0234643	[0.016-0.031] unit decrease	NR [11722792] (imputed)	N
814	chr6	30073846	30073847	rs2844795	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	6p22.1		rs2844795-C	0.480583	2E-9		0.0242799	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
814	chr6	30073846	30073847	rs2844795	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total fatty acid levels	115,006 European ancestry individuals	NA	6p22.1		rs2844795-C	0.480588	2E-9		0.0242374	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
814	chr6	30073846	30073847	rs2844795	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholines levels	115,006 European ancestry individuals	NA	6p22.1		rs2844795-C	0.480588	6E-9		0.0224748	[0.015-0.03] unit decrease	NR [11722792] (imputed)	N
814	chr6	30073846	30073847	rs2844795	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-6 fatty acid levels	115,006 European ancestry individuals	NA	6p22.1		rs2844795-C	0.480588	5E-13		0.0289827	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
814	chr6	30073846	30073847	rs2844795	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Linoleic acid levels	115,006 European ancestry individuals	NA	6p22.1		rs2844795-C	0.480588	4E-14		0.0305085	[0.023-0.038] unit decrease	NR [11722792] (imputed)	N
814	chr6	30073846	30073847	rs2844795	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	6p22.1		rs2844795-C	0.480583	3E-8		0.0227871	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
814	chr6	30074071	30074072	rs2517601	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in diabetes	70,762 European ancestry individuals, 20,967 African American individuals	NA	6p22.1	TRIM31	rs2517601-C	0.115	4E-12		0.956	[0.69-1.23] unit decrease	Affymetrix [NR] (imputed)	N
814	chr6	30074071	30074072	rs2517601	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p22.1	NR	rs2517601-C	0.1326	5E-13		0.0126	[0.0093-0.0159] unit decrease	NR [7666894] (imputed)	N
814	chr6	30074309	30074310	rs78026509	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	6p22.1	TRIM31, TRIM31-AS1	rs78026509-G	0.0759	2E-9		0.04028003	[0.027-0.053] unit decrease	Affymetrix [~ 2500000] (imputed)	N
814	chr6	30075102	30075103	rs2523992	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p22.1	NR	rs2523992-G	0.1571	2E-7	(EA)	0.0468	[0.029-0.064] unit decrease	Illumina [~ 11800000] (imputed)	N
814	chr6	30075863	30075864	rs2023472	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p22.1		rs2023472-A	0.411	6E-25				Affymetrix [10369434] (imputed)	N
814	chr6	30075863	30075864	rs2023472	23417110	Tin A	2013-02-16	Hum Genet	Genome-wide association study identified the human leukocyte antigen region as a novel locus for plasma beta-2 microglobulin.	Beta-2 microglubulin plasma levels	6,728 European ancestry individuals		6p22.1	TRIM31	rs2023472-A	0.38	3E-15		0.03	[0.022-0.038] unit increase	Affymetrix [2500000] (imputed)	N
814	chr6	30076116	30076117	rs11961190	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	6p22.1	TRIM31, TRIM31-AS1	rs11961190-T	0.00312500000000004	2E-22		0.19694449	[0.16-0.24] unit decrease	Affymetrix [93095623] (imputed)	N
814	chr6	30076116	30076117	rs11961190	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6p22.1	TRIM31, TRIM31-AS1	rs11961190-T	0.00312500000000004	1E-23		0.20271449	[0.16-0.24] unit decrease	Affymetrix [93095623] (imputed)	N
814	chr6	30076116	30076117	rs11961190	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	6p22.1	TRIM31, TRIM31-AS1	rs11961190-T	0.00311799999999995	3E-29		0.22552978	[0.19-0.26] unit decrease	Affymetrix [93095623] (imputed)	N
814	chr6	30076116	30076117	rs11961190	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6p22.1	TRIM31, TRIM31-AS1	rs11961190-T	0.00311700000000004	4E-27		0.21662813	[0.18-0.26] unit decrease	Affymetrix [93095623] (imputed)	N
814	chr6	30076659	30076660	rs9261418	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	6p22.1	TRIM15	rs9261418-A	0.144604	2E-8		5.61	z score increase	NR [10847151] (imputed)	N
814	chr6	30077134	30077135	rs9378220	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	6p22.1	TRIM31	rs9378220-?	NR	4E-18		0.0309	[0.025-0.037] unit increase	Affymetrix [5701386] (imputed)	N
814	chr6	30077228	30077229	rs2523990	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	6p22.1	TRIM31, TRIM31-AS1	rs2523990-G	0.538375	2E-32		0.029605733	[0.025-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
814	chr6	30077228	30077229	rs2523990	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6p22.1	TRIM31, TRIM31-AS1	rs2523990-G	0.538376	5E-71		0.044279587	[0.039-0.049] unit decrease	Affymetrix [93095623] (imputed)	N
814	chr6	30078274	30078275	rs2523989	33909500	Moll M	2021-04-28	Am J Physiol Lung Cell Mol Physiol	A Systematic Analysis of Protein-altering Exonic Variants in Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease	up to 31,465 European ancestry cases, up to 203,688 European ancestry controls, up to 1,413 African ancestry cases, up to 6,080 African ancestry controls, up to 287 East Asian ancestry cases, up to 7,484 East Asian ancestry controls, up to 61 Hispanic cases, up to 613 Hispanic controls	NA	6p22.1	TRIM31	rs2523989-T	0.17	1E-10		1.09	[1.06 -1.12]	Illumina [at least 109036]	N
814	chr6	30078274	30078275	rs2523989	25936594	Tomer Y	2015-04-27	J Autoimmun	Genome wide identification of new genes and pathways in patients with both autoimmune thyroiditis and type 1 diabetes.	Type 1 diabetes and autoimmune thyroid diseases	346 European ancestry cases, 727 European ancestry controls	185 European ancestry cases, 340 European ancestry controls	6p22.1	TRIM31	rs2523989-A	NR	2E-8		1.7499		Illumina [514008]	N
814	chr6	30079992	30079993	rs2523987	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p22.1	TRIM31, TRIM31-AS1, TRIM40, SNORA48	rs2523987-C	0.1149598	2E-13	(EA, MHC class I polypeptide-related sequence A)	0.4957	[0.36-0.63] unit increase	Affymetrix [509946]	N
814	chr6	30080368	30080369	rs34704616	20125193	Cirulli ET	2010-02-03	Eur J Hum Genet	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American individuals, up to 74 South Asian ancestry individuals	NA	6p22.1	XXbac-BPG250I8.13	rs34704616-?	NR	6E-6	(Colorword)			Illumina [up to 563855]	N
814	chr6	30081107	30081108	rs9261425	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	6p22.1	NR	rs9261425-?	NR	6E-7		0.0545	[0.033-0.076] unit increase	Illumina [at least 560000] (imputed)	N
814	chr6	30081741	30081742	rs28780084	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p22.1	NR	rs28780084-?	NR	9E-8		0.0841	[0.053-0.115] unit decrease	Illumina [at least 560000] (imputed)	N
814	chr6	30083707	30083708	rs2523978	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	6p22.1	TRIM31	rs2523978-C	0.869967	4E-24		0.0286531	[0.023-0.034] unit increase	Affymetrix [NR] (imputed)	N
814	chr6	30083707	30083708	rs2523978	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	6p22.1	TRIM31	rs2523978-C	0.869885	7E-28		0.031888	[0.026-0.038] unit increase	Affymetrix [NR] (imputed)	N
814	chr6	30086421	30086422	rs9261431	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p22.1	NR	rs9261431-?	NR	2E-19		0.1221	[0.095-0.149] unit increase	Illumina [at least 560000] (imputed)	N
814	chr6	30087604	30087605	rs115254023	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6p22.1		rs115254023-T	0.018886	8E-29		0.092888236	[0.077-0.109] unit increase	Affymetrix [93095623] (imputed)	N
814	chr6	30092934	30092935	rs1419674	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p22.1	NR	rs1419674-T	0.02787	7E-9	(SBDS)	0.03953	NR unit increase	Illumina [1671387] (imputed)	N
814	chr6	30093136	30093137	rs2517592	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	SNORA48	rs2517592-T	NR	5E-8		5.465	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
814	chr6	30093363	30093364	rs10947055	21348951	Parsa A	2011-02-01	Clin Transl Sci	Hypertrophy-associated polymorphisms ascertained in a founder cohort applied to heart failure risk and mortality.	Cardiac hypertrophy	851 Old Order Amish individuals	NA	6p22.1	TRIM38	rs10947055-?	NR	2E-7	(additive, recessive)			Affymetrix [361034]	N
814	chr6	30094112	30094113	rs2844790	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	SNORA48	rs2844790-C	NR	4E-10		6.271	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
814	chr6	30094112	30094113	rs2844790	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p22.1	NR	rs2844790-?	NR	1E-8		0.1888	[0.12-0.25] unit increase	Illumina [at least 560000] (imputed)	N
814	chr6	30100975	30100976	rs61211515	29404672	Roshandel D	2018-02-05	Diabetologia	Meta-genome-wide association studies identify a locus on chromosome 1 and multiple variants in the MHC region for serum C-peptide in type 1 diabetes.	Stimulated C-peptide levels in type I diabetes	1,303 European ancestry individuals	NA	6p22.1	MHC	rs61211515-?	0.16	1E-7		0.39	[0.25-0.53] unit decrease	Illumina [8978838] (imputed)	N
814	chr6	30100975	30100976	rs61211515	29404672	Roshandel D	2018-02-05	Diabetologia	Meta-genome-wide association studies identify a locus on chromosome 1 and multiple variants in the MHC region for serum C-peptide in type 1 diabetes.	C-peptide levels in type I diabetes	3,479 European ancestry individuals	NA	6p22.1	MHC	rs61211515-?	0.16	2E-6				Illumina [7988630] (imputed)	N
814	chr6	30101564	30101565	rs115333019	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	6p22.1	SNORA48, TRIM40	rs115333019-G	0.00916799999999995	8E-43		0.1634603	[0.14-0.19] unit decrease	Affymetrix [93095623] (imputed)	N
814	chr6	30101655	30101656	rs1362104	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	SNORA48	rs1362104-A	NR	2E-10		6.398	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
814	chr6	30105153	30105154	rs28780086	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	6p22.1	TRIM40	rs28780086-G	0.023328	1E-25		0.078185886	[0.064-0.093] unit increase	Affymetrix [93095623] (imputed)	N
814	chr6	30105153	30105154	rs28780086	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	6p22.1	TRIM40	rs28780086-G	0.023332	8E-30		0.093978085	[0.078-0.11] unit decrease	Affymetrix [93095623] (imputed)	N
814	chr6	30108682	30108683	rs9261484	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	6p22.1	TRIM40	rs9261484-T	0.2451	2E-8		0.0635	[0.042-0.085] unit decrease	NR [7784415] (imputed)	N
814	chr6	30110858	30110858	rs146464922	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	6p22.1	TRIM40	rs146464922-CTT	0.014425	8E-11		0.05988576	[0.042-0.078] unit increase	Affymetrix [93095623] (imputed)	N
814	chr6	30111070	30111071	rs117432766	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6p22.1	TRIM40	rs117432766-A	0.016714	1E-25		0.09170394	[0.075-0.109] unit increase	Affymetrix [93095623] (imputed)	N
814	chr6	30113549	30113550	rs12202131	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6p22.1	TRIM40	rs12202131-A	0.052983	2E-12		0.06297606	[0.045-0.081] unit increase	Affymetrix [93095623] (imputed)	N
814	chr6	30113954	30113955	rs3815082	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p22.1	NR	rs3815082-G	0.295	9E-12	(IFNAR2_of_CD20p)			Illumina [5084123] (imputed)	N
814	chr6	30114306	30114307	rs2256146	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p22.1	NR	rs2256146-C	0.02787	7E-9	(SBDS)	0.03953	NR unit increase	Illumina [1671387] (imputed)	N
814	chr6	30115319	30115320	rs115651142	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p22.1	NR	rs115651142-?	NR	6E-7		0.324	[0.19-0.45] unit decrease	Illumina [at least 560000] (imputed)	N
814	chr6	30119889	30119890	rs9468692	20041166	Fellay J	2009-12-24	PLoS Genet	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	6p22.1	TRIM10	rs9468692-?	NR	1E-6	(setpoint)			Illumina [NR]	N
814	chr6	30120636	30120637	rs9468693	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	6p22.1	TRIM10	rs9468693-C	0.071694	2E-29		0.0510031	[0.043-0.059] unit decrease	Affymetrix [93095623] (imputed)	N
814	chr6	30121459	30121460	rs2022065	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	6p22.1	TRIM10	rs2022065-T	0.296544	2E-49		0.041531093	[0.036-0.047] unit decrease	Affymetrix [93095623] (imputed)	N
814	chr6	30121459	30121460	rs2022065	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6p22.1	TRIM10	rs2022065-T	0.296544	4E-41		0.041549113	[0.035-0.048] unit decrease	Affymetrix [93095623] (imputed)	N
814	chr6	30121459	30121460	rs2022065	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	6p22.1	TRIM10	rs2022065-T	0.296537	4E-62		0.05393633	[0.048-0.06] unit decrease	Affymetrix [93095623] (imputed)	N
814	chr6	30121459	30121460	rs2022065	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	6p22.1	TRIM10	rs2022065-T	0.2963	3E-25		0.04064069	[0.033-0.048] unit decrease	Affymetrix [~ 2500000] (imputed)	N
814	chr6	30121459	30121460	rs2022065	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	6p22.1	TRIM10	rs2022065-T	0.2963	1E-23		0.03931364	[0.032-0.047] unit decrease	Affymetrix [~ 2500000] (imputed)	N
814	chr6	30121459	30121460	rs2022065	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	6p22.1	TRIM10	rs2022065-T	0.2963	3E-30		0.04433495	[0.037-0.052] unit decrease	Affymetrix [~ 2500000] (imputed)	N
814	chr6	30121459	30121460	rs2022065	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	6p22.1	TRIM10	rs2022065-T	0.2962	2E-35		0.04860256	[0.041-0.056] unit decrease	Affymetrix [~ 2500000] (imputed)	N
814	chr6	30121459	30121460	rs2022065	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	6p22.1	TRIM10	rs2022065-T	0.2962	1E-34		0.04804721	[0.04-0.056] unit decrease	Affymetrix [~ 2500000] (imputed)	N
814	chr6	30122392	30122393	rs116596081	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	6p22.1	TRIM10	rs116596081-A	0.011844	3E-46		0.14981039	[0.13-0.17] unit decrease	Affymetrix [93095623] (imputed)	N
814	chr6	30122392	30122393	rs116596081	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6p22.1	TRIM10	rs116596081-A	0.0118470000000001	6E-38		0.13759963	[0.12-0.16] unit decrease	Affymetrix [93095623] (imputed)	N
814	chr6	30124810	30124811	rs144731721	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Red cell distribution width	441,263 European ancestry individuals	NA	6p22.1		rs144731721-?	NR	1E-14		0.080611	[0.059-0.102] unit increase	NR [9800000] (imputed)	N
814	chr6	30124810	30124811	rs144731721	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean reticulocyte volume	436,944 European ancestry individuals	NA	6p22.1		rs144731721-?	NR	1E-42		0.142474	[0.12-0.16] unit increase	NR [9800000] (imputed)	N
814	chr6	30124810	30124811	rs144731721	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	6p22.1	TRIM10	rs144731721-T	0.00866500000000004	5E-16		0.096417926	[0.073-0.12] unit increase	Affymetrix [93095623] (imputed)	N
814	chr6	30124810	30124811	rs144731721	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	6p22.1	TRIM10	rs144731721-T	0.00867700000000005	2E-39		0.15744652	[0.13-0.18] unit increase	Affymetrix [93095623] (imputed)	N
814	chr6	30124810	30124811	rs144731721	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	6p22.1	TRIM10	rs144731721-T	0.00866699999999998	6E-12		0.083550446	[0.06-0.107] unit increase	Affymetrix [93095623] (imputed)	N
814	chr6	30124810	30124811	rs144731721	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	6p22.1	TRIM10	rs144731721-T	0.0068	4E-11		0.1617919	[0.11-0.21] unit increase	Affymetrix [~ 2500000] (imputed)	N
814	chr6	30126621	30126622	rs116113631	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	6p22.1	TRIM10	rs116113631-T	0.010294	3E-68		0.19197759	[0.17-0.21] unit decrease	Affymetrix [93095623] (imputed)	N
814	chr6	30126621	30126622	rs116113631	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6p22.1	TRIM10	rs116113631-T	0.010297	3E-66		0.19043158	[0.17-0.21] unit decrease	Affymetrix [93095623] (imputed)	N
814	chr6	30127558	30127558	rs148280884	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	6p22.1	TRIM10	rs148280884-CAT	0.0122	4E-25		0.1718773	[0.14-0.2] unit decrease	Affymetrix [~ 2500000] (imputed)	N
814	chr6	30127558	30127558	rs148280884	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	6p22.1	TRIM10	rs148280884-CAT	0.0122	2E-27		0.1797411	[0.15-0.21] unit decrease	Affymetrix [~ 2500000] (imputed)	N
814	chr6	30127558	30127558	rs148280884	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	6p22.1	TRIM10	rs148280884-CAT	0.0122	2E-23		0.1655507	[0.13-0.2] unit decrease	Affymetrix [~ 2500000] (imputed)	N
814	chr6	30127558	30127558	rs148280884	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	6p22.1	TRIM10	rs148280884-CAT	0.0122	6E-25		0.1707215	[0.14-0.2] unit decrease	Affymetrix [~ 2500000] (imputed)	N
814	chr6	30127804	30127805	rs1573296	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	6p22.1	TRIM10	rs1573296-G	0.1349	2E-11		0.03526502	[0.025-0.046] unit decrease	Affymetrix [~ 2500000] (imputed)	N
814	chr6	30127804	30127805	rs1573296	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	6p22.1	TRIM10	rs1573296-G	0.1349	1E-14		0.04046172	[0.03-0.051] unit decrease	Affymetrix [~ 2500000] (imputed)	N
814	chr6	30127872	30127873	rs1318638	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	6p22.1	TRIM10	rs1318638-T	0.0648	3E-9		0.04268956	[0.029-0.057] unit increase	Affymetrix [~ 2500000] (imputed)	N
814	chr6	30127872	30127873	rs1318638	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin concentration	172,851 European ancestry individuals	NA	6p22.1	TRIM10	rs1318638-T	0.0649	1E-20		0.06542649	[0.052-0.079] unit decrease	Affymetrix [~ 2500000] (imputed)	N
814	chr6	30128102	30128103	rs142460927	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	6p22.1	TRIM10	rs142460927-C	0.00303299999999995	5E-25		0.21333578	[0.17-0.25] unit decrease	Affymetrix [93095623] (imputed)	N
814	chr6	30128441	30128442	rs12212092	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	6p22.1	TRIM10	rs12212092-T	0.0644400000000001	6E-20		0.043098915	[0.034-0.052] unit decrease	Affymetrix [93095623] (imputed)	N
814	chr6	30128441	30128442	rs12212092	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	6p22.1	TRIM10	rs12212092-T	0.06443	7E-84		0.096261576	[0.087-0.106] unit decrease	Affymetrix [93095623] (imputed)	N
814	chr6	30128441	30128442	rs12212092	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	6p22.1	TRIM10	rs12212092-T	0.064469	1E-29		0.051481474	[0.043-0.06] unit decrease	Affymetrix [93095623] (imputed)	N
814	chr6	30128441	30128442	rs12212092	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6p22.1	TRIM10	rs12212092-T	0.064468	1E-30		0.09085926	[0.075-0.106] unit decrease	Affymetrix [93095623] (imputed)	N
814	chr6	30128441	30128442	rs12212092	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	6p22.1	TRIM10	rs12212092-T	0.0648	1E-24		0.07379727	[0.06-0.088] unit decrease	Affymetrix [~ 2500000] (imputed)	N
814	chr6	30128441	30128442	rs12212092	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	6p22.1	TRIM10	rs12212092-T	0.0648	8E-24		0.07307307	[0.059-0.087] unit decrease	Affymetrix [~ 2500000] (imputed)	N
814	chr6	30128441	30128442	rs12212092	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	6p22.1	TRIM10	rs12212092-T	0.0648	3E-24		0.07368067	[0.059-0.088] unit decrease	Affymetrix [~ 2500000] (imputed)	N
814	chr6	30131122	30131123	rs17188113	29562276	Venkateswaran S	2018-03-01	Inflamm Bowel Dis	Enhanced Contribution of HLA in Pediatric Onset Ulcerative Colitis.	Childhood onset ulcerative colitis	466 European ancestry cases, 2,099 European ancestry controls	NA	6p22.1	HLA	rs17188113-?		9E-7		1.8086454	[1.57-2.05]	Affymetrix [3996700] (imputed)	N
814	chr6	30131710	30131711	rs17194474	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	6p22.1	TRIM15	rs17194474-C	0.028724	4E-18		0.055055395	[0.043-0.067] unit decrease	Affymetrix [93095623] (imputed)	N
814	chr6	30135976	30135977	rs9368624	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p22.1	TRIM15, TRIM10, TRIM40, TRIM31-AS1, TRIM31, TRIM26, PAIP1P1	rs9368624-A	0.1996982	3E-11	(EA, MHC class I polypeptide-related sequence A)	0.3704	[0.26-0.48] unit decrease	Affymetrix [509946]	N
814	chr6	30137648	30137649	rs1018846	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	6p22.1	TRIM15	rs1018846-A	0.064503	4E-25		0.046360865	[0.038-0.055] unit increase	Affymetrix [93095623] (imputed)	N
814	chr6	30137865	30137866	rs2107195	30037793	Haapasalo K	2018-09-21	Infect Immun	The Psoriasis Risk Allele <i>HLA-C*06:02</i> Shows Evidence of Association with Chronic or Recurrent Streptococcal Tonsillitis.	Tonsillitis	95 Finnish cases, 504 Finnish controls	NA	6p22.1	TRIM10, TRIM15	rs2107195-?		5E-6		3.7		Illumina [100000]	N
814	chr6	30138161	30138162	rs1029239	34642315	Ferreiro-Iglesias A	2021-10-12	Nat Commun	Germline determinants of humoral immune response to HPV-16 protect against oropharyngeal cancer.	Human papilloma virus 16 positive oropharyngeal cancer	1,078 European ancestry cases, 5,256 European ancestry controls	NA	6p22.1		rs1029239-G	NR	3E-6		1.2904		Illumina [7574753] (imputed)	N
814	chr6	30138644	30138645	rs1029238	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	6p22.1	TRIM15	rs1029238-A	0.089377	4E-11		0.025450304	[0.018-0.033] unit increase	Affymetrix [93095623] (imputed)	N
814	chr6	30139698	30139699	rs929156	33909500	Moll M	2021-04-28	Am J Physiol Lung Cell Mol Physiol	A Systematic Analysis of Protein-altering Exonic Variants in Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease	up to 31,465 European ancestry cases, up to 203,688 European ancestry controls, up to 1,413 African ancestry cases, up to 6,080 African ancestry controls, up to 287 East Asian ancestry cases, up to 7,484 East Asian ancestry controls, up to 61 Hispanic cases, up to 613 Hispanic controls	NA	6p22.1	TRIM15	rs929156-G	0.76	8E-8		1.06	[1.04 -1.09]	Illumina [at least 109036]	N
815	chr6	30153362	30153363	rs2106072	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p22.1	NR	rs2106072-A	0.13	3E-10		1.11	[1.08-1.15]	Affymetrix [9886854] (imputed)	N
815	chr6	30153362	30153363	rs2106072	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p22.1	NR	rs2106072-A	0.13	9E-13			[NR]	Affymetrix [9886854] (imputed)	N
815	chr6	30153362	30153363	rs2106072	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in non-current smokers	16,488 European ancestry cases, 169,688 European ancestry controls	NA	6p22.1	NR	rs2106072-A	0.13	3E-10		1.12	[1.08-1.15]	Affymetrix [9886854] (imputed)	N
815	chr6	30155148	30155149	rs2517622	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Proheparin-binding EGF-like growth factor levels	21,758 European ancestry individuals	9,173 individuals	6p22.1		rs2517622-C	0.11	1E-9		0.0845	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
815	chr6	30155148	30155149	rs2517622	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Help-seeking from a psychiatrist	36,286 British ancestry cases, 297,126 British ancestry controls	NA	6p22.1	NR	rs2517622-G	0.863	4E-11		1.0799136	NR	NR [5276842] (imputed)	N
815	chr6	30155148	30155149	rs2517622	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Help-seeking from a GP (without major depressive disorder symptoms)	8,632 British ancestry cases, 49,493 British ancestry controls	NA	6p22.1	NR	rs2517622-?	NR	3E-6		1.1223345	[1.07-1.18]	NR [5276842] (imputed)	N
815	chr6	30165272	30165273	rs2523722	22883433	Irish Schizophrenia Genomics Consortium and the Wellcome Trust Case Control Consortium 2	2012-08-07	Biol Psychiatry	Genome-wide association study implicates HLA-C*01:02 as a risk factor at the major histocompatibility complex locus in schizophrenia.	Schizophrenia	1,606 European ancestry cases, 1,794 European ancestry controls	13,195 European ancestry cases, 31,021 European ancestry controls	6p22.1	MHC, TRIM26	rs2523722-G	0.737	1E-16		1.25	[1.12-1.39]	Affymetrix [6212339]	N
815	chr6	30166885	30166886	rs2523720	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p22.1		rs2523720-C	0.836	9E-50				Affymetrix [10369434] (imputed)	N
815	chr6	30167834	30167835	rs2428503	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	TRIM26	rs2428503-T	NR	2E-9		0.0221273	[0.015-0.029] unit decrease	Affymetrix [127266] (imputed)	N
815	chr6	30168318	30168319	rs2523719	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	6p22.1	TRIM26	rs2523719-G	0.830078	2E-21		0.0245541	[0.019-0.03] unit increase	Affymetrix [NR] (imputed)	N
815	chr6	30169326	30169327	rs2517611	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (anti-inflammatory and antirheumatic products, non-steroids)	74,150 European ancestry cases, 90,370 European ancestry controls, 29,694 East Asian ancestry cases, 149,032 East Asian ancestry controls	NA	6p22.1		rs2517611-G	NR	2E-9		0.0422	[0.028-0.056] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
815	chr6	30169326	30169327	rs2517611	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Asthma	38,369 European ancestry cases, 411,131 European ancestry controls, 13,015 East Asian ancestry cases, 162,933 East Asian ancestry controls	NA	6p22.1		rs2517611-G	NR	3E-11		0.0613	[0.043-0.079] unit increase	Affymetrix, Illumina [25837673] (imputed)	N
815	chr6	30169326	30169327	rs2517611	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (anti-inflammatory and antirheumatic products, non-steroids)	74,150 European ancestry cases, 90,370 European ancestry controls	NA	6p22.1	TRIM26	rs2517611-G	0.229963	7E-10		0.050484303	[0.034-0.067] unit decrease	Affymetrix [7288503] (imputed)	N
815	chr6	30170509	30170510	rs1117490	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (childhood onset)	9,433 British ancestry cases, 318,237 British ancestry controls	NA	6p22.1	TRIM26, TRIM15, TRIM39	rs1117490-C	0.234	3E-8		1.1	[1.063-1.137]	Affymetrix [10894596] (imputed)	N
815	chr6	30170509	30170510	rs1117490	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (adult onset)	21,564 British ancestry cases, 318,237 British ancestry controls	NA	6p22.1	TRIM26, TRIM15, TRIM39	rs1117490-C	0.234	7E-7		1.059	[1.036-1.084]	Affymetrix [10894596] (imputed)	N
815	chr6	30174130	30174131	rs2021722	23453885	Smoller JW	2013-02-27	Lancet	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NA	6p22.1	MHC region	rs2021722-?	0.789	2E-12	(Modelling analysis)			NR [1252901] (imputed)	N
815	chr6	30174130	30174131	rs2021722	21926974	Ripke S	2011-09-18	Nat Genet	Genome-wide association study identifies five new schizophrenia loci.	Schizophrenia	9,394 European ancestry cases, 12,462 European ancestry controls	8,442 European ancestry cases, 21,397 European ancestry controls	6p22.1	TRIM26	rs2021722-C	0.78	2E-12		1.15	[1.11-1.19]	Affymetrix, Illumina [1252901] (imputed)	N
815	chr6	30179421	30179422	rs2844775	24489884	Mick E	2014-01-01	PLoS One	Genome-wide association study of proneness to anger.	Anger	8,747 European ancestry individuals	NA	6p22.1	TRIM31, TRIM10, PPP1R11, TRIM40, TRIM15, HLA-A29.1, TRIM26, HCG9, ZNRD1, RNF39	rs2844775-A	0.25	8E-7	(Temperament)	0.15	[NR] unit decrease	Affymetrix [677643]	N
815	chr6	30181882	30181883	rs2188100	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p22.1	NR	rs2188100-A	0.16	5E-11		1.15	[1.1-1.2]	Affymetrix [9886854] (imputed)	N
815	chr6	30181882	30181883	rs2188100	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p22.1	NR	rs2188100-A	0.16	5E-14			[NR]	Affymetrix [9886854] (imputed)	N
815	chr6	30181882	30181883	rs2188100	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in never smokers	8,631 European ancestry cases, 120,544 European ancestry controls	NA	6p22.1	NR	rs2188100-A	0.16	2E-11		1.15	[1.11-1.2]	Affymetrix [9886854] (imputed)	N
815	chr6	30182394	30182395	rs1345229	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	6p22.1	TRIM26	rs1345229-A	0.085649	1E-9		0.023856346	[0.016-0.032] unit increase	Affymetrix [93095623] (imputed)	N
815	chr6	30186680	30186681	rs9380159	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p22.1	NR	rs9380159-?	NR	8E-13		0.1064	[0.077-0.136] unit decrease	Illumina [at least 560000] (imputed)	N
815	chr6	30190039	30190040	rs2517602	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	TRIM26	rs2517602-T	NR	1E-9		6.068	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
815	chr6	30191130	30191130	rs72031595	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	6p22.1		rs72031595-CT	0.551943	5E-9		0.014966801	[0.01-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
815	chr6	30200438	30200439	rs5875247	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	6p22.1	HCG17	rs5875247-C	0.465286	6E-14		0.017951211	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
815	chr6	30200872	30200873	rs3094137	29784950	Sawai H	2018-05-21	Sci Rep	Genome-wide association study identified new susceptible genetic variants in HLA class I region for hepatitis B virus-related hepatocellular carcinoma.	Hepatocellular carcinoma in hepatitis B infection	473 Japanese ancestry chronic hepatitis and hepatocellular carcinoma cases, 516 Japanese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma	153 Japanese ancestry chronic hepatitis and hepatocellular carcinoma cases, 614 Japanese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma, 94 Chinese ancestry chronic hepatitis and hepatocellular carcinoma cases, 187 Chinese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma, 185 Thai ancestry chronic hepatitis and hepatocellular carcinoma cases, 198 Thai ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma	6p22.1	HLA	rs3094137-?	NR	4E-7	(Japanese)	1.76	[1.41-2.19]	Affymetrix [447830]	N
815	chr6	30202570	30202571	rs885916	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	HCG17	rs885916-T	NR	1E-11		6.793	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
815	chr6	30207928	30207929	rs3129693	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p22.1	HCG17, TRIM26BP	rs3129693-T	NR	2E-9		0.0239683	[0.016-0.032] unit increase	Affymetrix [323123] (imputed)	N
815	chr6	30215376	30215377	rs9391803	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	6p22.1	TRIM26	rs9391803-T	0.852467	2E-19		0.0266262	[0.021-0.032] unit decrease	Affymetrix [NR] (imputed)	N
815	chr6	30217350	30217351	rs9261608	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6p22.1		rs9261608-T	0.858197	3E-8		0.0330532	[0.021-0.045] unit increase	NR [11722792] (imputed)	N
815	chr6	30223427	30223428	rs2189373	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	HCG17	rs2189373-T	NR	8E-10		0.0232455	[0.016-0.031] unit decrease	Affymetrix [323858] (imputed)	N
815	chr6	30223427	30223428	rs2189373	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	HCG17	rs2189373-T	NR	5E-9		5.835	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
815	chr6	30223512	30223513	rs2187980	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	6p22.1		rs2187980-A	0.855994	2E-8		0.0328244	[0.021-0.044] unit increase	NR [11722792] (imputed)	N
815	chr6	30224969	30224970	rs3094078	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	6p22.1	HCG17	rs3094078-?	NR	2E-15		0.0305	[0.024-0.037] unit decrease	Affymetrix [5701386] (imputed)	N
815	chr6	30224969	30224970	rs3094078	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA	6p22.1	NR	rs3094078-?	NR	8E-6		0.0526	[0.029-0.076] unit increase	Illumina [at least 560000] (imputed)	N
815	chr6	30227142	30227143	rs185780876	32185793	Yan J	2020-03-17	Clin Genet	A genome-wide association study identifies FSHR rs2300441 associated with follicle-stimulating hormone levels.	Luteinizing hormone levels in healthy women	720 Han Chinese ancestry individuals	NA	6p22.1	NR	rs185780876-?	NR	4E-7				Affymetrix [3101376] (imputed)	N
815	chr6	30229305	30229306	rs2428507	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	HLA-L, HCG17	rs2428507-A	NR	4E-9		5.893	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
815	chr6	30229921	30229922	rs2516703	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p22.1	HCG17	rs2516703-G	NR	1E-6		0.0184109	[0.011-0.026] unit decrease	Illumina [13520550] (imputed)	N
815	chr6	30229921	30229922	rs2516703	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	6p22.1	HCG17	rs2516703-G	NR	1E-10		0.0283809	[0.02-0.037] unit decrease	Illumina [13520550] (imputed)	N
815	chr6	30230521	30230521	rs201471471	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	6p22.1	NR	rs201471471-?	NR	3E-7		0.0808	[0.05-0.112] unit increase	Illumina [at least 560000] (imputed)	N
815	chr6	30232513	30232514	rs2516697	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	HCG17, HLA-L	rs2516697-A	NR	1E-8		0.0194794	[0.013-0.026] unit decrease	Affymetrix [321016] (imputed)	N
815	chr6	30241535	30241536	rs28894080	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p22.1	NR	rs28894080-?	NR	1E-8		0.1082	[0.071-0.145] unit increase	Illumina [at least 560000] (imputed)	N
815	chr6	30247698	30247701	rs141219707	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	6p22.1	HCG17, HLA-L	rs141219707-G	0.064428	9E-12		0.0670612	[0.059-0.075] unit increase	Affymetrix [93095623] (imputed)	N
815	chr6	30247699	30247701	rs368679067	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hashimoto thyroiditis	537 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	6p22.1		rs368679067-G	0.221880434	3E-13		0.64336747	[0.47-0.82] unit increase	Illumina [13428945] (imputed)	N
815	chr6	30256935	30256936	rs1264622	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	HCG17, HLA-L, HCG18	rs1264622-T	NR	2E-12		0.0273215	[0.02-0.035] unit decrease	Affymetrix [323858] (imputed)	N
815	chr6	30256935	30256936	rs1264622	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	HCG17, HLA-L, HCG18	rs1264622-T	NR	2E-11		0.0260716	[0.018-0.034] unit decrease	Affymetrix [127266] (imputed)	N
815	chr6	30256935	30256936	rs1264622	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6p22.1	HCG18	rs1264622-T	0.200945	1E-26		0.045548007	[0.037-0.054] unit decrease	Affymetrix [93095623] (imputed)	N
815	chr6	30256935	30256936	rs1264622	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p22.1	HLA-L, HCG17, HCG18	rs1264622-T	0.1901	2E-7		0.0455	[0.028-0.063] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
815	chr6	30256935	30256936	rs1264622	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	6p22.1	HCG18	rs1264622-T	0.2019	4E-13		0.03202955	[0.023-0.041] unit decrease	Affymetrix [~ 2500000] (imputed)	N
815	chr6	30273764	30273764	rs11380688	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p22.1	HCG17, HCG18	rs11380688-CT	0.2755	1E-9		0.0469	[0.032-0.062] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
815	chr6	30276381	30276382	rs139419536	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	6p22.1	HCG18	rs139419536-G	0.5266	1E-22		0.0193	[0.015-0.023] unit decrease	Affymetrix [18391927] (imputed)	N
815	chr6	30276679	30276680	rs577217250	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	6p22.1	HCG18, HCG17	rs577217250-C	0.6248	8E-56		0.06073397	[0.053-0.068] unit decrease	Affymetrix [~ 2500000] (imputed)	N
815	chr6	30276679	30276680	rs577217250	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	6p22.1	HCG18, HCG17	rs577217250-C	0.6248	5E-58		0.0619973	[0.054-0.07] unit decrease	Affymetrix [~ 2500000] (imputed)	N
816	chr6	30279073	30279074	rs1264587	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p22.1	HCG17, HCG18	rs1264587-G	NR	7E-10		0.0215064	[0.015-0.028] unit decrease	Affymetrix [319769] (imputed)	N
816	chr6	30279073	30279074	rs1264587	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p22.1	HCG17, HCG18	rs1264587-G	NR	5E-9		0.0203583	[0.014-0.027] unit decrease	Affymetrix [319769] (imputed)	N
816	chr6	30279073	30279074	rs1264587	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p22.1	HCG17, HCG18	rs1264587-G	NR	4E-8		0.0194219	[0.013-0.026] unit decrease	Affymetrix [321169] (imputed)	N
816	chr6	30281086	30281087	rs6926097	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mumps	31,227 European ancestry cases, 54,153 European ancestry controls	NA	6p22.1	NR	rs6926097-?	NR	2E-13		0.5671	[0.41-0.72] unit decrease	Illumina [at least 560000] (imputed)	N
816	chr6	30285120	30285121	rs9357097	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8 on CD39+ CD8+ T cell	2,915 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p22.1		rs9357097-T	0.47616	8E-12		0.1925	[0.14-0.25] unit increase	Illumina [17951463] (imputed)	N
816	chr6	30285649	30285650	rs1264585	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p22.1	NR	rs1264585-A	0.233	1E-13	(conditional)	1.206	[1.16-1.25]	Illumina [11270530] (imputed)	N
816	chr6	30288282	30288283	rs9261655	33563987	Tyrrell J	2021-02-09	Nat Commun	Genetic predictors of participation in optional components of UK Biobank.	Percentage of invited food questionnaires completed	300,639 European ancestry individuals	NA	6p22.1	NR	rs9261655-G	0.89	4E-9		0.86	[0.57-1.15] unit increase	Affymetrix [39302896] (imputed)	N
816	chr6	30290661	30290662	rs1264584	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	334,944 European ancestry, NR ancestry individuals	NA	6p22.1		rs1264584-?	NR	5E-8				Affymetrix [NR] (imputed)	N
816	chr6	30296070	30296071	rs1110464	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	6p22.1	TRIM39-RPP21	rs1110464-T	0.5706	3E-9		0.015407745	[0.01-0.021] unit decrease	Affymetrix [~ 11515000] (imputed)	N
816	chr6	30299244	30299245	rs3094067	25827949	Kunz M	2015-05-04	Exp Dermatol	Genome-wide association study identifies new susceptibility loci for cutaneous lupus erythematosus.	Cutaneous lupus erythematosus	151 European ancestry cases, 1,288 European ancestry controls	219 European ancestry cases, 262 European ancestry controls	6p22.1	TRIM39, RPP21	rs3094067-G	0.096	2E-11		2.32	[1.68-3.20]	Affymetrix [906600]	N
816	chr6	30302599	30302600	rs3778624	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	6p22.1	NR	rs3778624-?		7E-7	(MICA)			Illumina [NR]	N
816	chr6	30305952	30305953	rs9261659	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p22.1	NR	rs9261659-G	0.12	1E-10	(IFNAR2_of_CD20p)			Illumina [5084123] (imputed)	N
816	chr6	30305952	30305953	rs9261659	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p22.1	NR	rs9261659-?	NR	3E-13		0.1554	[0.11-0.2] unit decrease	Illumina [at least 560000] (imputed)	N
816	chr6	30313028	30313029	rs45626136	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p22.1	RPP21	rs45626136-C	0.939	1E-6		0.111	[0.066-0.156] unit increase	Affymetrix, Illumina [7374092] (imputed)	N
816	chr6	30313339	30313340	rs6986	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Anxiety	at least 23,606 European ancestry cases, at least 113,351 European ancestry controls	624,615 European ancestry cases, 1,310,854 European ancestry controls	6p22.1	TRIM39, RPP21	rs6986-G	0.2545	1E-12		0.018671134	[0.013-0.025] unit decrease	NR [9417325] (imputed)	N
816	chr6	30313339	30313340	rs6986	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	6p22.1	RPP21	rs6986-C	0.223335	7E-10		6.16	z score increase	NR [10847151] (imputed)	N
816	chr6	30313339	30313340	rs6986	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling guilty	373,380 European ancestry individuals	NA	6p22.1	TRIM39-RPP21	rs6986-C	0.223335	4E-13		7.25	z score increase	NR [10847151] (imputed)	N
816	chr6	30313339	30313340	rs6986	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	6p22.1	GNL1, HLA-E, PRR3, RPP21, TRIM10, TRIM15, TRIM26, TRIM31, TRIM39, TRIM39-RPP21, TRIM40	rs6986-C	0.22334	8E-9		5.76	z score increase	Illumina [18485882] (imputed)	N
816	chr6	30313339	30313340	rs6986	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	6p22.1	NR	rs6986-C	0.2277	5E-6	(Trans-16:1n-7, EA)	0.0079	[0.0046-0.0112] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
816	chr6	30321056	30321057	rs3132649	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	6p22.1	TRIM39-RPP21, HLA-E	rs3132649-G	NR	4E-7		0.152484	[0.093-0.211] unit increase	Illumina [at least 950000] (imputed)	N
816	chr6	30323976	30323976	rs9280949	31577861	Dai J	2019-10-31	Int J Cancer	Genome-wide association study of INDELs identified four novel susceptibility loci associated with lung cancer risk.	Lung cancer	20,871 European ancestry cases, 15,971 European ancestry controls, 2,331 Chinese ancestry cases, 3,077 Chinese ancestry controls	NA	6p22.1	RPP21	rs9280949-T	0.09	3E-10		1.16	[1.11-1.22]	Illumina [484196]	N
816	chr6	30325530	30325531	rs3130379	31272903	Sunadome H	2019-07-01	Allergol Int	Correlation between eosinophil count, its genetic background and body mass index: The Nagahama Study.	Eosinophil counts	4,650 East Asian ancestry individuals	NA	6p22.1	NR	rs3130379-T	0.11	2E-7		0.1677	NR unit increase	Illumina [103680] (imputed)	N
816	chr6	30325530	30325531	rs3130379	31272903	Sunadome H	2019-07-01	Allergol Int	Correlation between eosinophil count, its genetic background and body mass index: The Nagahama Study.	Eosinophil counts	4,206 East Asian ancestry individuals	NA	6p22.1	NR	rs3130379-T	0.11	4E-10		0.2134	NR unit increase	Illumina [103680] (imputed)	N
816	chr6	30326522	30326522	rs34500224	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	6p22.1	UBQLN1P1, HCG19P	rs34500224-CA	0.272902	2E-20		0.026657145	[0.021-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
816	chr6	30326527	30326527	rs202005918	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	95,717 East Asian ancestry individuals	NA	6p22.1		rs202005918-CA	0.233019	1E-8		0.0295853	[0.019-0.04] unit increase	Illumina [13471431] (imputed)	N
816	chr6	30327951	30327952	rs3094622	29899525	Klimentidis YC	2018-06-13	Int J Obes (Lond)	Genome-wide association study of habitual physical activity in over 377,000 UK Biobank participants identifies multiple variants including CADM2 and APOE.	Moderate to vigorous physical activity levels	377,234 European ancestry individuals	NA	6p22.1	RPP21	rs3094622-A	0.86	1E-9		0.02	unit increase	Affymetrix [11800000] (imputed)	N
816	chr6	30329194	30329195	rs116470386	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p22.1	NR	rs116470386-?	NR	5E-7		0.2768	[0.17-0.39] unit decrease	Illumina [at least 560000] (imputed)	N
816	chr6	30333504	30333505	rs3094054	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p22.1	NR	rs3094054-T	0.1132	1E-7	(EA)	0.056	[0.035-0.077] unit decrease	Illumina [~ 11800000] (imputed)	N
816	chr6	30335349	30335350	rs2057726	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	6p22.1		rs2057726-C	0.143	2E-91		0.31	[0.28-0.34] % increase	Affymetrix [NR] (imputed)	N
816	chr6	30339938	30339938	rs139568388	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	UBQLN1P1	rs139568388-CT	NR	2E-8		0.0220953	[0.014-0.03] unit decrease	Affymetrix [323858] (imputed)	N
816	chr6	30339938	30339938	rs139568388	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	UBQLN1P1	rs139568388-CT	NR	3E-8		0.0218212	[0.014-0.03] unit decrease	Affymetrix [127266] (imputed)	N
816	chr6	30342752	30342753	rs3129817	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p22.1	UBQLN1P1	rs3129817-A	NR	1E-9		0.0241213	[0.016-0.032] unit decrease	Affymetrix [319769] (imputed)	N
816	chr6	30342752	30342753	rs3129817	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p22.1	UBQLN1P1	rs3129817-A	NR	1E-8		0.0225242	[0.015-0.03] unit decrease	Affymetrix [319769] (imputed)	N
816	chr6	30342752	30342753	rs3129817	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p22.1	UBQLN1P1	rs3129817-A	NR	5E-8		0.0218736	[0.014-0.03] unit decrease	Affymetrix [321169] (imputed)	N
816	chr6	30342752	30342753	rs3129817	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Anxiety	at least 23,606 European ancestry cases, at least 113,351 European ancestry controls	624,615 European ancestry cases, 1,310,854 European ancestry controls	6p22.1	UBQLN1P1	rs3129817-G	0.1083	2E-48		0.052231386	[0.044-0.06] unit increase	NR [9417325] (imputed)	N
816	chr6	30342752	30342753	rs3129817	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	UBQLN1P1	rs3129817-A	NR	1E-8		5.695	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
816	chr6	30347305	30347306	rs970270	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Prostate cancer	10,792 European ancestry cases, 410,350 European ancestry controls	NA	6p22.1		rs970270-A	NR	3E-7		1.0985389	NR	Affymetrix [7846216] (imputed)	N
816	chr6	30347719	30347720	rs3132625	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Peripheral artery disease	7,114 European ancestry cases, 475,964 European ancestry controls, 4,112 East Asian ancestry cases, 173,601 East Asian ancestry controls	NA	6p22.1		rs3132625-G	NR	2E-8		0.165	[0.11-0.22] unit increase	Affymetrix, Illumina [25844651] (imputed)	N
816	chr6	30359696	30359697	rs2524204	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	6p22.1	intergenic	rs2524204-C	0.1322	6E-15		0.04113655	[0.031-0.051] unit decrease	Affymetrix [~ 2500000] (imputed)	N
816	chr6	30359696	30359697	rs2524204	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	6p22.1	intergenic	rs2524204-C	0.1322	7E-14		0.03948169	[0.029-0.05] unit decrease	Affymetrix [~ 2500000] (imputed)	N
816	chr6	30361357	30361358	rs9391683	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p22.1		rs9391683-G	0.689	2E-33				Affymetrix [10369434] (imputed)	N
816	chr6	30361422	30361423	rs2516686	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	6p22.1	intergenic	rs2516686-G	0.1322	1E-13		0.03934043	[0.029-0.05] unit decrease	Affymetrix [~ 2500000] (imputed)	N
816	chr6	30361422	30361423	rs2516686	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	6p22.1	intergenic	rs2516686-G	0.1322	6E-12		0.03638258	[0.026-0.047] unit decrease	Affymetrix [~ 2500000] (imputed)	N
816	chr6	30361806	30361807	rs9391684	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p22.1		rs9391684-G	0.688	7E-19				Affymetrix [10369434] (imputed)	N
816	chr6	30365447	30365448	rs3130116	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p22.1	NR	rs3130116-C	0.1391	6E-13		0.0124	[0.0091-0.0157] unit decrease	NR [7666894] (imputed)	N
816	chr6	30367010	30367011	rs1264565	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	6p22.1		rs1264565-T	0.618	8E-15		0.01	[0.008-0.012] unit increase	NR [NR] (imputed)	N
816	chr6	30373884	30373885	rs28780100	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p22.1	NR	rs28780100-?	NR	3E-9		0.1143	[0.077-0.152] unit increase	Illumina [at least 560000] (imputed)	N
816	chr6	30375883	30375884	rs34874107	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	6p22.1		rs34874107-C	0.182865	4E-10		0.019685585	[0.014-0.026] unit increase	Affymetrix [93095623] (imputed)	N
816	chr6	30380365	30380366	rs78860372	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lung cancer	4,444 East Asian ancestry cases, 174,282 East Asian ancestry controls	NA	6p22.1		rs78860372-T	0.236112602	5E-9		0.14972878	[0.099-0.2] unit increase	Illumina [13429980] (imputed)	N
816	chr6	30382167	30382168	rs1264544	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	334,944 European ancestry, NR ancestry individuals	NA	6p22.1		rs1264544-?	NR	5E-8				Affymetrix [NR] (imputed)	N
816	chr6	30382167	30382168	rs1264544	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	6p22.1		rs1264544-C	0.667	1E-12				Affymetrix [10369434] (imputed)	N
816	chr6	30385745	30385746	rs3094717	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p22.1	NR	rs3094717-?	NR	6E-7		0.0733	[0.044-0.102] unit decrease	Illumina [at least 560000] (imputed)	N
816	chr6	30387241	30387242	rs139215104	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mumps	31,227 European ancestry cases, 54,153 European ancestry controls	NA	6p22.1	NR	rs139215104-?	NR	6E-11		0.5908	[0.41-0.77] unit increase	Illumina [at least 560000] (imputed)	N
816	chr6	30390179	30390180	rs9261899	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	6p22.1	NR	rs9261899-?	NR	9E-33		11.926	NR z score increase	Illumina [at least 830937] (imputed)	N
816	chr6	30391590	30391591	rs76241157	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lung cancer	3,791 European ancestry cases, 489,012 European ancestry controls, 4,444 East Asian ancestry cases, 174,282 East Asian ancestry controls	NA	6p22.1		rs76241157-T	NR	1E-8		0.1454	[0.095-0.196] unit increase	Affymetrix, Illumina [25845450] (imputed)	N
816	chr6	30391974	30391975	rs3130127	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	MICC	rs3130127-A	NR	8E-10		6.154	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
816	chr6	30398389	30398390	rs114810763	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6p22.1		rs114810763-A	0.1549	2E-9		0.0121	[0.0082-0.016] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
816	chr6	30398389	30398390	rs114810763	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6p22.1	Intergenic	rs114810763-A	0.1549	6E-12	(MTAG)	0.0129	[0.0092-0.0166] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
816	chr6	30400762	30400763	rs149543464	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms (MTAG)	354,862 European ancestry individuals	NA	6p22.1	NR	rs149543464-G	0.8838	1E-10		0.0217	[0.015-0.028] unit increase	Illumina [NR] (imputed)	N
816	chr6	30400762	30400763	rs149543464	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms	354,862 European ancestry individuals	NA	6p22.1	NR	rs149543464-G	0.8838	8E-9		0.0213	[0.014-0.029] unit increase	Illumina [NR] (imputed)	N
817	chr6	30408786	30408787	rs1269556	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	6p22.1	NR	rs1269556-?	NR	2E-6		0.0083093	[0.0049-0.0117] unit decrease	Affymetrix [805426] (imputed)	N
817	chr6	30409248	30409249	rs3132645	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p22.1	RNF39, TRIM31, FLOT1, PPP1R18, HLA-J, ZNRD1-AS1_3, ZNRD1, TRIM26, HCG17, TRIM26BP, HLA-L, TRIM39-RPP21, RPP21, HCG19P, ATAT1, NRM, IER3, HCG20, LINC00243, ZNRD1-AS1, HCG4P3, PPP1R11, TRIM31-AS1, TRIM40, TRIM10, TRIM15, PAIP1P1, XXbac-BPG283O16.9, HCG18, TRIM39, HLA-N, UBQLN1P1, MICC, SUCLA2P1, GNL1, ABCF1, PPP1R10, PTMAP1, MRPS18B, C6orf136, AL662800.2, DHX16, AL662797.1, XXbac-BPG252P9.9, TUBB, MDC1, Y_RNA, XXbac-BPG252P9.10, RN7SL353P	rs3132645-C	0.09428285	4E-22	(EA, MHC class I polypeptide-related sequence B)	0.7147	[0.57-0.86] unit decrease	Affymetrix [509946]	N
817	chr6	30411902	30411903	rs1264516	33106546	Johnson TA	2020-10-26	J Hum Genet	Association of an IGHV3-66 gene variant with Kawasaki disease.	Kawasaki disease	1,276 East Asian ancestry cases, 5,086 East Asian ancestry controls	2,152 East Asian ancestry cases, 2,751 East Asian ancestry controls	6p22.1	LOC105375012	rs1264516-A	NR	4E-11		1.24	[1.16-1.32]	Affymetrix, Illumina [6265045] (imputed)	N
817	chr6	30432176	30432177	rs3130141	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p22.1	RPP21, HLA-E	rs3130141-A	0.283	4E-23				Illumina [118177]	N
817	chr6	30441203	30441204	rs2516667	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p22.1	NR	rs2516667-?	NR	5E-10		0.0889	[0.061-0.117] unit decrease	Illumina [at least 560000] (imputed)	N
817	chr6	30441302	30441303	rs3132615	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p22.1	NR	rs3132615-T	0.1154	2E-6	(EA)	0.0507	[0.03-0.071] unit decrease	Illumina [~ 11800000] (imputed)	N
817	chr6	30452962	30452963	rs9380180	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p22.1	RANP1	rs9380180-A	NR	6E-9		0.0171541	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
817	chr6	30452962	30452963	rs9380180	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p22.1	RANP1	rs9380180-A	NR	1E-8		0.0168134	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
817	chr6	30455293	30455294	rs12207974	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (age of onset)	37,846 British ancestry individuals	NA	6p22.1	NR	rs12207974-C	0.776	9E-11		1.066	[0.74-1.39] unit decrease	Affymetrix [10894596] (imputed)	N
817	chr6	30455320	30455321	rs17875360	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	6p22.1	NR	rs17875360-?	NR	1E-6		0.0925	[0.055-0.13] unit increase	Illumina [at least 560000] (imputed)	N
817	chr6	30455919	30455920	rs1264459	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	6p22.1	HLA-E	rs1264459-A	0.826302	3E-10		0.019164842	[0.013-0.025] unit increase	Affymetrix [93095623] (imputed)	N
817	chr6	30458063	30458064	rs1264457	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	6p22.1	HLA-E	rs1264457-A	0.60324	8E-24		0.02398372	[0.019-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
817	chr6	30458063	30458064	rs1264457	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p22.1	HLA-E	rs1264457-G		4E-11		0.015	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
817	chr6	30468790	30468791	rs3131115	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder	29,475 European ancestry cases, 63,482 European ancestry controls	NA	6p21.33	NR	rs3131115-C	0.671942	1E-7		1.0845987	[1.05-1.12]	Affymetrix [7791636] (imputed)	N
817	chr6	30468790	30468791	rs3131115	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	6p21.33	HLA-E, GNL1	rs3131115-T	NR	2E-6		0.0966506	[0.057-0.136] unit decrease	Illumina [at least 950000] (imputed)	N
817	chr6	30471519	30471520	rs2429657	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.33		rs2429657-G	0.21809299999999998	2E-8		1.0286343	[1.02-1.04]	Affymetrix, Illumina [9851866] (imputed)	N
817	chr6	30479913	30479914	rs140668832	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs140668832-?		2E-9		1.07	[1.05-1.09]	Illumina [7645193] (imputed)	N
817	chr6	30479913	30479914	rs140668832	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs140668832-?		3E-10		1.92	[1.57-2.35]	Illumina [7645193] (imputed)	N
817	chr6	30482475	30482476	rs28894081	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p21.33	NR	rs28894081-A	0.0655	1E-7		0.0126	[0.0079-0.0173] unit increase	NR [7666894] (imputed)	N
817	chr6	30483489	30483490	rs181383036	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p21.33	NR	rs181383036-?	NR	2E-12		0.3665	[0.27-0.47] unit increase	Illumina [at least 560000] (imputed)	N
817	chr6	30484035	30484036	rs10484552	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p21.33	NR	rs10484552-?	NR	8E-10		0.0986	[0.067-0.13] unit decrease	Illumina [at least 560000] (imputed)	N
817	chr6	30487303	30487304	rs143654430	30111768	Yao C	2018-08-15	Nat Commun	Genome-wide mapping of plasma protein QTLs identifies putatively causal genes and pathways for cardiovascular disease.	Blood protein levels	6861 European ancestry individuals	4298 European ancestry individuals	6p21.33		rs143654430-T	0.981	7E-18	(C2)	0.639	unit increase	Affymetrix, Illumina [8509364] (imputed)	N
817	chr6	30493033	30493034	rs139629463	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mumps	31,227 European ancestry cases, 54,153 European ancestry controls	NA	6p21.33	NR	rs139629463-?	NR	4E-6		0.3	[0.17-0.43] unit increase	Illumina [at least 560000] (imputed)	N
817	chr6	30494464	30494465	rs149608588	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p21.33	NR	rs149608588-?	NR	1E-6		0.2523	[0.15-0.36] unit decrease	Illumina [at least 560000] (imputed)	N
817	chr6	30495680	30495681	rs41265607	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.33		rs41265607-C	0.801	3E-28				Affymetrix [10369434] (imputed)	N
817	chr6	30495680	30495681	rs41265607	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs41265607-C	0.801	4E-34				Affymetrix [10369434] (imputed)	N
817	chr6	30495738	30495739	rs147537141	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	6p21.33		rs147537141-G	0.014219	2E-16		0.08431184	[0.064-0.104] unit increase	Affymetrix [93095623] (imputed)	N
817	chr6	30508955	30508956	rs3130117	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p21.33	NR	rs3130117-?	NR	2E-7		0.0742	[0.046-0.102] unit increase	Illumina [at least 560000] (imputed)	N
817	chr6	30511169	30511170	rs2524222	27479909	Hyde CL	2016-08-01	Nat Genet	Identification of 15 genetic loci associated with risk of major depression in individuals of European descent.	Major depressive disorder	84,847 European ancestry cases, 241,266 European ancestry controls	45,773 European ancestry cases, 106,354 European ancestry controls	6p21.33	GNL1	rs2524222-T	0.219809	1E-6		0.0335	[0.02-0.047] unit increase	Illumina [1220000] (imputed)	N
817	chr6	30528653	30528654	rs3130040	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	6p21.33	PRR3	rs3130040-T	NR	2E-8		0.0366187	[0.024-0.049] unit increase	Illumina [13520550] (imputed)	N
817	chr6	30537605	30537606	rs3132613	21900946	Nakabayashi K	2011-09-08	J Hum Genet	Identification of independent risk loci for Graves' disease within the MHC in the Japanese population.	Graves' disease	1,119 Japanese ancestry cases, 2,718 Japanese ancestry controls	432 Japanese ancestry cases, 1,157 Japanese ancestry controls	6p21.33	MHC	rs3132613-C	0.25	1E-13		1.43	[1.30-1.57]	Perlegen [268068]	N
817	chr6	30539204	30539205	rs4148247	26379185	Garcia-Etxebarria K	2015-09-17	PLoS One	No Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity.	Mild influenza (H1N1) infection	107 European ancestry mild cases, 549 European ancestry population controls	NA	6p21.33	GCN20, ABCF1	rs4148247-?	0.0167	1E-8		5.963	[5.27-6.66]	Affymetrix [547296]	N
818	chr6	30539951	30539952	rs2269710	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	IgM levels	14,442 Icelandic ancestry individuals	2,157 Swedish ancestry individuals	6p21.33	ABCF1	rs2269710-C	0.3579	3E-20		0.11	NR SD units increase	Illumina [21568490] (imputed)	N
818	chr6	30544400	30544401	rs3132610	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p21.33	NR	rs3132610-G	0.1198	1E-6	(EA)	0.0499	[0.03-0.07] unit decrease	Illumina [~ 11800000] (imputed)	N
818	chr6	30565852	30565853	rs9262120	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p21.33	ABCF1	rs9262120-A	NR	3E-8		5.562	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
818	chr6	30566406	30566407	rs3095276	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	6p21.33	NR	rs3095276-?	NR	5E-6		0.0784	[0.045-0.112] unit increase	Illumina [at least 560000] (imputed)	N
818	chr6	30571470	30571471	rs1264423	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.33		rs1264423-T	0.489	1E-18				Affymetrix [10369434] (imputed)	N
818	chr6	30571470	30571471	rs1264423	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	6p21.33	PPP1R10	rs1264423-C	0.5121	6E-16		0.02836222	[0.021-0.035] unit decrease	Affymetrix [~ 2500000] (imputed)	N
818	chr6	30573841	30573842	rs9262122	30169916	Sun Y	2018-08-31	J Eur Acad Dermatol Venereol	Investigation of the Predisposing Factor of Pemphigus and its clinical subtype through a Genome-wide association and next generation sequence analysis.	Pemphigus vulgaris	101 Chinese ancestry cases, 844 Chinese ancestry controls	at least 56 Chinese ancestry cases, up to 996 Chinese ancestry controls	6p21.33	NR	rs9262122-?	NR	5E-6	(adjusted for HLA-DRB1*14)	2.73		Illumina [5546030] (imputed)	N
818	chr6	30576780	30576781	rs1264419	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	6p21.33	NR	rs1264419-C	0.5128	9E-10		1.037	[1.03-1.05]	Affymetrix, Illumina [NR] (imputed)	N
818	chr6	30578334	30578335	rs2267637	33002439	Jin G	2020-10-01	Lancet Oncol	Genetic risk, incident gastric cancer, and healthy lifestyle: a meta-analysis of genome-wide association studies and prospective cohort study.	Gastric cancer	10,254 Han Chinese ancestry cases, 10,914 Han Chinese ancestry controls	NA	6p21.33	NR	rs2267637-T	0.31	3E-6		1.11	NR	Affymetrix, Illumina [6957974] (imputed)	N
818	chr6	30584132	30584133	rs55777621	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6p21.33	NR	rs55777621-?	NR	4E-12				Affymetrix [~ 8270000] (imputed)	N
818	chr6	30589385	30589386	rs111296996	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	6p21.33	MRPS18B	rs111296996-A	0.9872	5E-6		0.2039	[0.12-0.29] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
818	chr6	30593527	30593528	rs148828689	32599975	Bae JS	2020-06-30	Cancer Res Treat	Genome-Wide Association Study for the Identification of Novel Genetic Variants Associated with the Risk of Neuroblastoma in Korean Children.	Neuroblastoma (pediatric)	296 Korean ancestry child cases, 1,000 Korean ancestry adult controls	NA	6p21.33	MRPS18B	rs148828689-?		4E-18		7.8	[4.7-12.9]	Illumina [NR] (imputed)	N
818	chr6	30601231	30601232	rs12665339	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.33		rs12665339-A	0.85	3E-28				Affymetrix [10369434] (imputed)	N
818	chr6	30601231	30601232	rs12665339	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	6p21.33	ATAT1	rs12665339-G	0.17	6E-9		1.06	[1.04-1.08]	Illumina [20370935] (imputed)	N
818	chr6	30627215	30627216	rs1076829	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	DHX16	rs1076829-C	NR	4E-8		0.0176091	[0.011-0.024] unit decrease	Affymetrix [127266] (imputed)	N
818	chr6	30628251	30628252	rs1076828	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	DHX16	rs1076828-A	NR	2E-8		0.0180204	[0.012-0.024] unit decrease	Affymetrix [323858] (imputed)	N
818	chr6	30628956	30628957	rs74917683	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p21.33	NR	rs74917683-?	NR	2E-11		0.1491	[0.1-0.19] unit increase	Illumina [at least 560000] (imputed)	N
818	chr6	30633591	30633592	rs55740398	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	6p21.33		rs55740398-A	0.0027098	6E-6		0.29793	[0.17-0.43] unit increase	Affymetrix [15580782] (imputed)	N
818	chr6	30633874	30633875	rs3094097	31272903	Sunadome H	2019-07-01	Allergol Int	Correlation between eosinophil count, its genetic background and body mass index: The Nagahama Study.	Eosinophil counts	4,206 East Asian ancestry individuals	NA	6p21.33	NR	rs3094097-G	0.22	2E-9		0.1545	NR unit increase	Illumina [103680] (imputed)	N
818	chr6	30650025	30650026	rs9262142	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p21.33	NR	rs9262142-A	0.1166	3E-6	(EA)	0.0489	[0.028-0.069] unit decrease	Illumina [~ 11800000] (imputed)	N
818	chr6	30650317	30650318	rs2394392	31272903	Sunadome H	2019-07-01	Allergol Int	Correlation between eosinophil count, its genetic background and body mass index: The Nagahama Study.	Eosinophil counts	4,650 East Asian ancestry individuals	NA	6p21.33	NR	rs2394392-G	0.18	2E-8		0.1481	NR unit increase	Illumina [103680] (imputed)	N
818	chr6	30652780	30652781	rs9262143	33909500	Moll M	2021-04-28	Am J Physiol Lung Cell Mol Physiol	A Systematic Analysis of Protein-altering Exonic Variants in Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease	up to 31,465 European ancestry cases, up to 203,688 European ancestry controls, up to 1,413 African ancestry cases, up to 6,080 African ancestry controls, up to 287 East Asian ancestry cases, up to 7,484 East Asian ancestry controls, up to 61 Hispanic cases, up to 613 Hispanic controls	NA	6p21.33	PPP1R18	rs9262143-T	0.14	1E-13		1.11	[1.08 -1.15]	Illumina [at least 109036]	N
818	chr6	30652780	30652781	rs9262143	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p21.33	PPP1R18	rs9262143-T		3E-28		0.036	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
818	chr6	30652781	30652782	rs138394556	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	6p21.33	NRM	rs138394556-A	0.1475	2E-8		0.018794373	[0.012-0.025] unit decrease	Affymetrix [11515109] (imputed)	N
818	chr6	30656846	30656847	rs2269705	27151647	Chen G	2016-05-05	Addict Biol	An association study revealed substantial effects of dominance, epistasis and substance dependence co-morbidity on alcohol dependence symptom count.	Alcohol dependence symptom count	2,605 European ancestry individuals, 1,233 African American individuals	NA	6p21.33	NRM	rs2269705-?		3E-10	(additive)	0.266	[0.18-0.35] unit decrease	Illumina [974863]	N
818	chr6	30657014	30657015	rs3094092	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	6p21.33	NRM	rs3094092-T	NR	2E-8		0.036598	[0.024-0.049] unit increase	Illumina [13520550] (imputed)	N
818	chr6	30663065	30663066	rs137934746	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p21.33	NR	rs137934746-?	NR	1E-6		0.2471	[0.15-0.35] unit decrease	Illumina [at least 560000] (imputed)	N
818	chr6	30664450	30664451	rs370462350	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	6p21.33	NRM	rs370462350-?	NR	2E-9		0.375	[0.25-0.5] unit decrease	Illumina [34656550] (imputed)	N
818	chr6	30665524	30665525	rs149856401	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Stable angina pectoris	17,894 European ancestry cases, 325,132 European ancestry controls, 18,833 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	6p21.33		rs149856401-G	NR	1E-13		0.1724	[0.13-0.22] unit increase	Affymetrix, Illumina [20456336] (imputed)	N
818	chr6	30666445	30666447	rs147637345	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p21.33	NR	rs147637345-?	NR	1E-7		0.0819	[0.052-0.112] unit increase	Illumina [at least 560000] (imputed)	N
818	chr6	30666445	30666447	rs147637345	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	6p21.33	NR	rs147637345-?	NR	4E-6		0.0842	[0.048-0.12] unit decrease	Illumina [at least 560000] (imputed)	N
818	chr6	30666668	30666669	rs9468811	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs9468811-C	0.937946818961625	6E-7	(IGP19)	0.3471	[0.21-0.48] unit decrease	Illumina [~ 2500000] (imputed)	N
818	chr6	30666668	30666669	rs9468811	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs9468811-C	0.937725588025022	3E-6	(IGP74)	0.3262	[0.19-0.46] unit decrease	Illumina [~ 2500000] (imputed)	N
818	chr6	30666668	30666669	rs9468811	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs9468811-C	0.937641317877842	2E-6	(IGP75)	0.3304	[0.19-0.47] unit decrease	Illumina [~ 2500000] (imputed)	N
818	chr6	30666668	30666669	rs9468811	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs9468811-C	0.937418950958538	3E-6	(IGP69)	0.3228	[0.19-0.46] unit decrease	Illumina [~ 2500000] (imputed)	N
818	chr6	30666668	30666669	rs9468811	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs9468811-C	0.937308425901202	5E-7	(IGP76)	0.3469	[0.21-0.48] unit increase	Illumina [~ 2500000] (imputed)	N
818	chr6	30669267	30669268	rs115448006	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.33	NR	rs115448006-T	0.01	5E-11		0.599756	[0.42-0.78] unit increase	Affymetrix [up to 8900000] (imputed)	N
819	chr6	30671988	30671989	rs28986317	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p21.33	NR	rs28986317-?	NR	3E-10		0.1053	[0.073-0.138] unit decrease	Illumina [at least 560000] (imputed)	N
819	chr6	30679627	30679628	rs3094093	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs3094093-T	0.107712365538735	8E-6	(IGP65)	0.2214	[0.12-0.32] unit decrease	Illumina [~ 2500000] (imputed)	N
819	chr6	30679627	30679628	rs3094093	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs3094093-T	0.107418420152946	8E-6	(IGP2)	0.2231	[0.13-0.32] unit increase	Illumina [~ 2500000] (imputed)	N
819	chr6	30679627	30679628	rs3094093	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs3094093-T	0.107325880449438	3E-6	(IGP42)	0.2336	[0.14-0.33] unit increase	Illumina [~ 2500000] (imputed)	N
819	chr6	30685419	30685420	rs4713354	31272903	Sunadome H	2019-07-01	Allergol Int	Correlation between eosinophil count, its genetic background and body mass index: The Nagahama Study.	Eosinophil counts	4,650 East Asian ancestry individuals	NA	6p21.33	MDC1	rs4713354-C	0.216	2E-8		0.14	NR unit increase	Illumina [103680] (imputed)	N
819	chr6	30687471	30687472	rs117670375	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Gynecologic disease (multivariate analysis)	up to 7,975 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs117670375-?		1E-8	(uterine cervical cancer)			Illumina [7645193] (imputed)	N
819	chr6	30687471	30687472	rs117670375	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Gynecologic disease	7,975 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs117670375-?		1E-7		1.16	[1.10-1.22]	Illumina [7645193] (imputed)	N
819	chr6	30687471	30687472	rs117670375	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Gynecologic disease	7,315 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs117670375-?		2E-10				Illumina [7645193] (imputed)	N
819	chr6	30687471	30687472	rs117670375	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs117670375-?		2E-9		1.07	[1.05-1.09]	Illumina [7645193] (imputed)	N
819	chr6	30687471	30687472	rs117670375	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs117670375-?		3E-10		1.92	[1.57-2.35]	Illumina [7645193] (imputed)	N
819	chr6	30688426	30688427	rs3132584	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	TUBB	rs3132584-T	NR	1E-8		0.021321	[0.014-0.029] unit decrease	Affymetrix [323858] (imputed)	N
819	chr6	30688426	30688427	rs3132584	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	TUBB	rs3132584-T	NR	3E-8		0.0206734	[0.013-0.028] unit decrease	Affymetrix [127266] (imputed)	N
819	chr6	30688426	30688427	rs3132584	32989287	Cuellar-Partida G	2020-09-28	Nat Hum Behav	Genome-wide association study identifies 48 common genetic variants associated with handedness.	Left-handedness	1,766,671 European ancestry individuals	NA	6p21.33	TUBB	rs3132584-T	0.2056	6E-25		0.95483845	[NR]	Illumina [12493444] (imputed)	N
819	chr6	30693120	30693121	rs7781	33723403	Sha Z	2021-03-15	Nat Hum Behav	The genetic architecture of structural left-right asymmetry of the human brain.	Left-right brain asymmetry	32,256 European ancestry individuals	NA	6p21.33	TUBB	rs7781-G	0.24	2E-10				NR [9312144] (imputed)	N
819	chr6	30694373	30694374	rs3094128	31504236	Wiberg A	2019-09-05	Brain	Handedness, language areas and neuropsychiatric diseases: insights from brain imaging and genetics.	Handedness (non-right-handed vs right-handed)	44,631 European ancestry non-right-handed individuals, 356,567 European ancestry right-handed individuals	NA	6p21.33	TUBB, MICB, FLOT1	rs3094128-?	0.789	3E-8		1.0526316	[1.03-1.06]	NR [~ 11000000] (imputed)	N
819	chr6	30697446	30697447	rs3094127	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p21.33	FLOT1	rs3094127-A	NR	2E-8		5.644	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
819	chr6	30698540	30698541	rs1064627	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	FLOT1	rs1064627-G	NR	2E-8		0.0196765	[0.013-0.027] unit increase	Affymetrix [321016] (imputed)	N
819	chr6	30698540	30698541	rs1064627	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p21.33	NR	rs1064627-G	0.2	3E-13		1.15	[1.11-1.2]	Affymetrix [9886854] (imputed)	N
819	chr6	30698540	30698541	rs1064627	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p21.33	NR	rs1064627-G	0.2	1E-18			[NR]	Affymetrix [9886854] (imputed)	N
819	chr6	30698540	30698541	rs1064627	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p21.33	NR	rs1064627-G	0.2	2E-16		1.13	[1.1-1.16]	Affymetrix [9886854] (imputed)	N
819	chr6	30698540	30698541	rs1064627	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p21.33	NR	rs1064627-G	0.2	2E-17			[NR]	Affymetrix [9886854] (imputed)	N
819	chr6	30698540	30698541	rs1064627	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in non-current smokers	16,488 European ancestry cases, 169,688 European ancestry controls	NA	6p21.33	NR	rs1064627-G	0.2	2E-16		1.13	[1.1-1.16]	Affymetrix [9886854] (imputed)	N
819	chr6	30698540	30698541	rs1064627	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in never smokers	8,631 European ancestry cases, 120,544 European ancestry controls	NA	6p21.33	NR	rs1064627-G	0.2	1E-13		1.16	[1.11-1.2]	Affymetrix [9886854] (imputed)	N
819	chr6	30698540	30698541	rs1064627	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in ever smokers	12,446 European ancestry cases, 59,145 European ancestry controls	NA	6p21.33	NR	rs1064627-G	0.2	1E-7		1.1	[1.06-1.14]	Affymetrix [9886854] (imputed)	N
819	chr6	30713579	30713580	rs2284174	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	6p21.33	IER3	rs2284174-C	0.22	2E-21		1.12	[1.10-1.15]	Affymetrix, Illumina [6224355] (imputed)	N
819	chr6	30713579	30713580	rs2284174	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p21.33	NR	rs2284174-C	0.2189	1E-12		0.0102	[0.0075-0.0129] unit decrease	NR [7666894] (imputed)	N
819	chr6	30713807	30713808	rs3130662	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p21.33	IER3, DDR1	rs3130662-A	0.334	1E-25				Illumina [118177]	N
819	chr6	30717257	30717258	rs3129972	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of saturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	6p21.33		rs3129972-C	0.858209	1E-8		0.0336102	[0.022-0.045] unit decrease	NR [11722792] (imputed)	N
819	chr6	30718034	30718035	rs2535324	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	RN7SL353P	rs2535324-C	NR	2E-9		0.0198337	[0.013-0.026] unit decrease	Affymetrix [127266] (imputed)	N
819	chr6	30720310	30720311	rs28780111	30552173	Aterido A	2018-12-14	Ann Rheum Dis	Genetic variation at the glycosaminoglycan metabolism pathway contributes to the risk of psoriatic arthritis but not psoriasis.	Psoriatic arthritis	744 Spanish ancestry cases, 1,454 Spanish ancestry controls	1,430 cases, 1,417 controls	6p21.33	NR	rs28780111-?	NR	7E-11		6.51	[NR] z-score increase	Illumina [1387382] (imputed)	N
819	chr6	30724041	30724042	rs12213680	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	6p21.33	RN7SL353P	rs12213680-A	0.171261	4E-17		0.0263628	[0.02-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
819	chr6	30726938	30726939	rs3095340	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p21.33	HCG20	rs3095340-A	NR	4E-8		5.51	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
819	chr6	30727784	30727785	rs3131035	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCG20	rs3131035-G	NR	4E-11		0.024688	[0.017-0.032] unit decrease	Affymetrix [323858] (imputed)	N
819	chr6	30727784	30727785	rs3131035	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HCG20	rs3131035-G	NR	4E-10		0.0233656	[0.016-0.031] unit decrease	Affymetrix [127266] (imputed)	N
819	chr6	30730338	30730339	rs9262172	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.33		rs9262172-T	0.742	1E-26				Affymetrix [10369434] (imputed)	N
819	chr6	30730959	30730960	rs3094121	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCG20	rs3094121-T	NR	3E-8		0.0199067	[0.013-0.027] unit increase	Affymetrix [323123] (imputed)	N
819	chr6	30736150	30736151	rs12526186	19721433	McClay JL	2009-09-01	Mol Psychiatry	Genome-wide pharmacogenomic analysis of response to treatment with antipsychotics.	Response to antipsychotic treatment	494 European ancestry cases, 244 African American and other ancestry cases	NA	6p21.33	intergenic	rs12526186-?	NR	3E-6	(risperidone)	9.0	[NR] % variance	Affymetrix, Perlegen [492900]	N
819	chr6	30737485	30737486	rs3094117	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine without aura	7,107 European ancestry cases, 69,427 European ancestry controls	NA	6p21.33	intergenic	rs3094117-?	0.77	2E-6		1.12	[1.06-1.18]	Affymetrix, Illumina [~ 2300000] (imputed)	N
819	chr6	30745799	30745800	rs3129977	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p21.33	HCG20	rs3129977-A	NR	8E-11		6.498	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
819	chr6	30752927	30752928	rs147206302	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	6p21.33	HCG20	rs147206302-T	0.0032	7E-9		0.1843882	[0.12-0.25] unit decrease	Affymetrix [~ 2500000] (imputed)	N
819	chr6	30758465	30758466	rs3131043	31089142	Law PJ	2019-05-14	Nat Commun	Association analyses identify 31 new risk loci for colorectal cancer susceptibility.	Colorectal cancer	31,197 European ancestry cases, 61,770 European ancestry controls	NA	6p21.33	NR	rs3131043-G	0.43	3E-8		1.07	[1.05-1.1]	Affymetrix, Illumina [> 10000000] (imputed)	N
819	chr6	30758856	30758857	rs3129981	31358989	Gelernter J	2019-07-29	Nat Neurosci	Genome-wide association study of post-traumatic stress disorder reexperiencing symptoms in >165,000 US veterans.	Post-traumatic stress disorder (re-experiencing symptoms)	146,660 European ancestry individuals, 19,983 African American individuals	117,900 European ancestry individuals	6p21.33	NR	rs3129981-?	NR	2E-7	(AA)	0.347197	[NR] unit increase	Affymetrix [49134253] (imputed)	N
819	chr6	30761571	30761572	rs3129984	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p21.33	NR	rs3129984-T	0.1179	8E-6	(EA)	0.0465	[0.026-0.067] unit decrease	Illumina [~ 11800000] (imputed)	N
819	chr6	30762092	30762093	rs3131057	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	6p21.33	HCG20, LINC00243	rs3131057-C	0.6028	8E-17		0.03073045	[0.024-0.038] unit decrease	Affymetrix [~ 2500000] (imputed)	N
819	chr6	30762133	30762134	rs11961980	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	6p21.33	HCG20, LINC00243	rs11961980-T	0.0038	2E-12		0.2133187	[0.15-0.27] unit decrease	Affymetrix [~ 2500000] (imputed)	N
819	chr6	30762133	30762134	rs11961980	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	6p21.33	HCG20, LINC00243	rs11961980-T	0.0038	1E-11		0.206328	[0.15-0.27] unit decrease	Affymetrix [~ 2500000] (imputed)	N
819	chr6	30763290	30763291	rs3131060	25827949	Kunz M	2015-05-04	Exp Dermatol	Genome-wide association study identifies new susceptibility loci for cutaneous lupus erythematosus.	Cutaneous lupus erythematosus	151 European ancestry cases, 1,288 European ancestry controls	219 European ancestry cases, 262 European ancestry controls	6p21.33	FLOT1	rs3131060-A	0.112	1E-13		2.3	[1.71-3.11]	Affymetrix [906600]	N
819	chr6	30763892	30763893	rs3131064	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p21.33	LINC00243	rs3131064-T	NR	2E-9		5.983	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
819	chr6	30764474	30764474	rs368739359	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	LINC00243	rs368739359-TAATG	NR	3E-8		0.0252092	[0.016-0.034] unit increase	Affymetrix [323123] (imputed)	N
819	chr6	30765578	30765579	rs1264376	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	LINC00243	rs1264376-A	NR	2E-13		0.0302583	[0.022-0.038] unit decrease	Affymetrix [323858] (imputed)	N
819	chr6	30765578	30765579	rs1264376	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	LINC00243	rs1264376-A	NR	3E-12		0.0288183	[0.021-0.037] unit decrease	Affymetrix [127266] (imputed)	N
819	chr6	30765894	30765895	rs10947096	29534301	Nishida N	2018-03-13	Hepatology	Key HLA-DRB1-DQB1 haplotypes and role of the BTNL2 gene for response to a hepatitis B vaccine.	Response to hepatitis B vaccine	107 Japanese ancestry low responder individuals, 351 Japanese ancestry intermediate responder individuals, 735 Japanese ancestry high responder individuals	NA	6p21.33	DDR1	rs10947096-?		2E-6		0.197	unit increase	Affymetrix [427664]	N
819	chr6	30766203	30766204	rs3129987	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Stable angina pectoris	18,833 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	6p21.33		rs3129987-C	0.884926231	3E-14		0.14236389	[0.11-0.18] unit decrease	Illumina [13427711] (imputed)	N
819	chr6	30766210	30766211	rs1264375	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	LINC00243	rs1264375-C	NR	1E-9		0.0209768	[0.014-0.028] unit decrease	Affymetrix [323858] (imputed)	N
819	chr6	30766944	30766945	rs4587207	25469926	Gottlieb DJ	2014-12-02	Mol Psychiatry	Novel loci associated with usual sleep duration: the CHARGE Consortium Genome-Wide Association Study.	Sleep duration	47,180 European ancestry individuals	4,771 African American individuals	6p21.33	FLOT1, LINC00243, IER3	rs4587207-G	0.20	2E-8	(EA)	3.14	[2.04-4.24] unit decrease	Affymetrix, Illumina [2033301]	N
819	chr6	30770286	30770287	rs1264371	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p21.33	NR	rs1264371-T	0.352	2E-8	(IFNAR2_of_CD20p)			Illumina [5084123] (imputed)	N
819	chr6	30770700	30770701	rs114376405	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p21.33	NR	rs114376405-?	NR	2E-6		0.2339	[0.14-0.33] unit increase	Illumina [at least 560000] (imputed)	N
819	chr6	30773313	30773314	rs4713376	30958311	Tao F	2019-04-03	J Neuromuscul Dis	Modifier Gene Candidates in Charcot-Marie-Tooth Disease Type 1A: A Case-Only Genome-Wide Association Study.	Decreased fine motor function in Charcot-Marie-Tooth disease 1A (eating with utensils)	132 European ancestry severe cases, 288 European ancestry mild cases	NA	6p21.33	HCG20, LINC00243, TUBB, FLOT1, IER3	rs4713376-C	0.174	1E-6		3.288	[2.041-5.297]	Illumina [600000]	N
819	chr6	30774356	30774357	rs3130783	23455636	Fritsche LG	2013-03-03	Nat Genet	Seven new loci associated with age-related macular degeneration.	Age-related macular degeneration	6,713 European ancestry cases, 48,402 European ancestry contols, 110 Southern Indian ancestry cases, 119 Southern Indian ancestry controls, 827 Japanese ancestry cases, 3,323 Japanese ancestry controls	9,070 European ancestry cases, 7,683 European ancestry contols, 461 East Asian ancestry cases, 547 East Asian ancestry controls	6p21.33	IER3, DDR1	rs3130783-A	0.79	2E-11		1.16	[1.11-1.20]	Affymetrix, Illumina [2442884] (imputed)	N
819	chr6	30775130	30775131	rs151302046	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.33	NR	rs151302046-A	0.011	6E-12		0.591132	[0.42-0.76] unit increase	Affymetrix [up to 8900000] (imputed)	N
819	chr6	30775600	30775601	rs1264363	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p21.33	NR	rs1264363-?	NR	8E-16		0.1077	[0.081-0.134] unit decrease	Illumina [at least 560000] (imputed)	N
819	chr6	30778282	30778283	rs73437885	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	6p21.33	NR	rs73437885-?	NR	8E-6		0.0081424	[0.0046-0.0117] unit increase	Affymetrix [805426] (imputed)	N
819	chr6	30780287	30780287	rs36091944	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	LINC00243	rs36091944-C	NR	3E-8		0.0230514	[0.015-0.031] unit decrease	Affymetrix [321016] (imputed)	N
819	chr6	30782001	30782002	rs886424	25936594	Tomer Y	2015-04-27	J Autoimmun	Genome wide identification of new genes and pathways in patients with both autoimmune thyroiditis and type 1 diabetes.	Type 1 diabetes and autoimmune thyroid diseases	346 European ancestry cases, 727 European ancestry controls	185 European ancestry cases, 340 European ancestry controls	6p21.33	IER3, DDR1	rs886424-A	NR	3E-14		2.2107		Illumina [514008]	N
819	chr6	30782001	30782002	rs886424	22688191	Bergen SE	2012-06-12	Mol Psychiatry	Genome-wide association study in a Swedish population yields support for greater CNV and MHC involvement in schizophrenia compared with bipolar disorder.	Bipolar disorder and schizophrenia	2,111 European ancestry schizophrenia cases, 836 European ancestry bipolar disorder cases, 2,535 European ancestry controls	NA	6p21.33	other genes, MHC	rs886424-?	NR	9E-7		1.37	[NR]	Affymetrix [745006]	N
819	chr6	30783241	30783242	rs9501489	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	LINC00243	rs9501489-A	NR	2E-10		0.0672114	[0.047-0.088] unit decrease	Affymetrix [321016] (imputed)	N
819	chr6	30783241	30783242	rs9501489	31235810	Fung K	2019-06-24	Sci Rep	Genome-wide association study identifies loci for arterial stiffness index in 127,121 UK Biobank participants.	Arterial stiffness index	127,121 European ancestry individuals	NA	6p21.33	DDR1	rs9501489-G	0.981	4E-6		0.067	[0.04-0.094] unit increase	Affymetrix [~ 10446505] (imputed)	N
819	chr6	30783486	30783487	rs142090224	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Chickenpox	107,769 European ancestry cases, 15,982 European ancestry controls	NA	6p21.33	NR	rs142090224-?	NR	3E-6		0.1169	[0.068-0.166] unit decrease	Illumina [at least 560000] (imputed)	N
819	chr6	30784192	30784193	rs1264355	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	6p21.33	NR	rs1264355-?	NR	2E-7		0.0847	[0.053-0.117] unit decrease	Illumina [at least 560000] (imputed)	N
819	chr6	30784343	30784344	rs574050376	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	LINC00243	rs574050376-T	NR	5E-9		0.082304	[0.055-0.11] unit decrease	Affymetrix [321016] (imputed)	N
819	chr6	30784343	30784344	rs574050376	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.33	NR	rs574050376-T	0.02613	2E-8	(AFMID)	0.0124	NR unit increase	Illumina [1671387] (imputed)	N
819	chr6	30787761	30787762	rs1264353	27659466	van der Harst P	2016-09-27	J Am Coll Cardiol	52 Genetic Loci Influencing Myocardial Mass.	QRS complex (Cornell)	up to 58,172 European ancestry individuals, up to 690 Orcadian (founder/genetic isolate) individuals	13,263 European ancestry individuals, 3,603 African American individuals, 4,619 Indian ancestry individuals	6p21.33	NR	rs1264353-?	NR	7E-6	(EA)			Affymetrix, Illumina, Perlegen [2766983] (imputed)	N
819	chr6	30791193	30791194	rs13208886	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p21.33	NR	rs13208886-?	NR	9E-12		0.1216	[0.087-0.156] unit decrease	Illumina [at least 560000] (imputed)	N
819	chr6	30792116	30792117	rs1264351	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	6p21.33	AK098012	rs1264351-C	0.1265	2E-8	(EA)	0.0032	[0.002-0.0044] unit decrease	Affymetrix [NR] (imputed)	N
819	chr6	30792116	30792117	rs1264351	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	6p21.33	AK098012	rs1264351-C	0.126	9E-10		0.0033	[0.0021-0.0045] unit decrease	Affymetrix [NR] (imputed)	N
819	chr6	30794345	30794346	rs4248151	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.33		rs4248151-T	0.722	2E-11				Affymetrix [10369434] (imputed)	N
819	chr6	30795170	30795171	rs7772131	22566498	Turner ST	2012-05-07	Hypertension	Genomic association analysis identifies multiple loci influencing antihypertensive response to an angiotensin II receptor blocker.	Response to angiotensin II receptor blocker therapy	198 European ancestry hypertensive individuals, 193 African American hypertensive individuals	NA	6p21.33	C6orf214	rs7772131-?	NR	3E-6	(AA)	6.73	[0.89-12.57] unit decrease	Affymetrix [~ 2300000] (imputed)	N
819	chr6	30796544	30796545	rs1264350	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	6p21.33	IER3, DDR1	rs1264350-T	NR	1E-7		0.151743	[0.096-0.208] unit increase	Illumina [at least 950000] (imputed)	N
819	chr6	30796658	30796659	rs1264349	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA	6p21.33	NR	rs1264349-?	NR	4E-6		0.0514	[0.03-0.073] unit decrease	Illumina [at least 560000] (imputed)	N
819	chr6	30797990	30797991	rs7749924	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs7749924-C	0.851598582628062	8E-6	(IGP32)	0.2204	[0.12-0.32] unit increase	Illumina [~ 2500000] (imputed)	N
819	chr6	30798276	30798277	rs78868683	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs78868683-?		3E-7		1.05	[1.03-1.08]	Illumina [7645193] (imputed)	N
819	chr6	30798276	30798277	rs78868683	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs78868683-?		1E-7		1.68	[1.39-2.04]	Illumina [7645193] (imputed)	N
819	chr6	30798323	30798324	rs3130646	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.33	Intergenic	rs3130646-G	NR	3E-6		0.0231949	[0.013-0.033] unit decrease	Illumina [13520550] (imputed)	N
819	chr6	30798696	30798697	rs1264347	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in diabetes	70,762 European ancestry individuals, 20,967 African American individuals	NA	6p21.33	AK098012	rs1264347-T	0.109	1E-12		1.01	[0.73-1.29] unit decrease	Affymetrix [NR] (imputed)	N
819	chr6	30798696	30798697	rs1264347	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.33	LINC00243	rs1264347-T	0.1326	5E-7		0.0552	[0.034-0.077] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
819	chr6	30799398	30799399	rs9501030	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	6p21.33	IER3, DDR1	rs9501030-A	0.16	4E-10		6.27	z-score increase	Affymetrix [4311822] (imputed)	N
819	chr6	30799398	30799399	rs9501030	20848476	Haritunians T	2010-11-01	Inflamm Bowel Dis	Genetic predictors of medically refractory ulcerative colitis.	Ulcerative colitis	324 European ancestry medically refractory ulcerative colitis cases, 537 European ancestry non-medically refractory ulcerative colitis cases, 2,601 European ancestry controls	NA	6p21.33	IER3, GTF2H4, FLOT1, VARS2, MIR588, DDR1	rs9501030-A	NR	4E-6	(Analysis II)			Illumina [313720]	N
820	chr6	30808761	30808762	rs2517582	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG27H4.8	rs2517582-T	NR	3E-11		0.019246	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
820	chr6	30808761	30808762	rs2517582	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG27H4.8	rs2517582-T	NR	8E-11		0.0187782	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
820	chr6	30808761	30808762	rs2517582	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG27H4.8	rs2517582-T	NR	4E-9		0.0185153	[0.012-0.025] unit decrease	Affymetrix [323123] (imputed)	N
820	chr6	30808761	30808762	rs2517582	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG27H4.8	rs2517582-T	NR	3E-9		0.0173144	[0.012-0.023] unit increase	Affymetrix [321169] (imputed)	N
820	chr6	30808761	30808762	rs2517582	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	6p21.33	NR	rs2517582-T	0.383721	5E-18		0.0135974	[0.011-0.016] unit increase	Affymetrix [16578495] (imputed)	N
820	chr6	30808761	30808762	rs2517582	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	6p21.33	NR	rs2517582-T	0.38430299999999995	2E-18		0.0277124	[0.022-0.033] unit increase	Affymetrix [16580851] (imputed)	N
820	chr6	30808761	30808762	rs2517582	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.33	XXbac-BPG27H4.8	rs2517582-T	0.4084	4E-6		0.0319	[0.018-0.045] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
820	chr6	30808761	30808762	rs2517582	28468790	Agopian AJ	2017-06-01	Circ Cardiovasc Genet	Genome-Wide Association Studies and Meta-Analyses for Congenital Heart Defects.	Conotruncal heart defects (maternal effects)	up to 838 European ancestry trios	NA	6p21.33	GTF2H4, VARS2	rs2517582-?	NR	3E-7		1.174787	[1.104793-1.249214]	Illumina [at least 4756722] (imputed)	N
820	chr6	30810055	30810056	rs2517580	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG27H4.8	rs2517580-A	NR	4E-8		0.0175646	[0.011-0.024] unit increase	Affymetrix [319769] (imputed)	N
820	chr6	30817878	30817879	rs2844662	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.33		rs2844662-C	0.624	2E-43				Affymetrix [10369434] (imputed)	N
820	chr6	30818347	30818348	rs139507938	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1a levels	3,522 Finnish ancestry individuals	NA	6p21.33	NR	rs139507938-G	NR	7E-6		0.907	[0.51-1.3] SD units increase	NR [10700000] (imputed)	N
820	chr6	30820372	30820373	rs2263298	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p21.33	NR	rs2263298-?	NR	3E-9		0.0842	[0.056-0.112] unit decrease	Illumina [at least 560000] (imputed)	N
820	chr6	30823759	30823760	rs2844660	28468790	Agopian AJ	2017-06-01	Circ Cardiovasc Genet	Genome-Wide Association Studies and Meta-Analyses for Congenital Heart Defects.	Congenital heart disease (maternal effect)	1,119 European ancestry trios	NA	6p21.33	intergenic	rs2844660-?	NR	1E-6		1.365322	[1.204119-1.548106]	Illumina [at least 4756722] (imputed)	N
820	chr6	30824130	30824131	rs11759095	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	6p21.33	NR	rs11759095-?	NR	1E-14		7.7	NR z score decrease	Illumina [at least 830937] (imputed)	N
820	chr6	30824450	30824451	rs758778	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.33		rs758778-T	0.759	4E-32				Affymetrix [10369434] (imputed)	N
820	chr6	30824450	30824451	rs758778	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p21.33		rs758778-T	0.759	3E-25				Affymetrix [10369434] (imputed)	N
820	chr6	30832062	30832063	rs2535326	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	RN7SKP186	rs2535326-T	NR	1E-10		0.0207397	[0.014-0.027] unit increase	Affymetrix [323858] (imputed)	N
820	chr6	30832062	30832063	rs2535326	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	RN7SKP186	rs2535326-T	NR	3E-9		0.019109	[0.013-0.025] unit increase	Affymetrix [127266] (imputed)	N
820	chr6	30832118	30832119	rs3130792	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DDR1	5,364 Icelandic ancestry individuals	NA	6p21.33		rs3130792-T	0.4372	7E-54		0.279081	[0.24-0.31] unit increase	Illumina [7506463] (imputed)	N
820	chr6	30838042	30838043	rs2535341	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p21.33	DDR1-AS1	rs2535341-C	NR	2E-8		0.0208511	[0.014-0.028] unit decrease	Affymetrix [323858] (imputed)	N
820	chr6	30845562	30845563	rs1264332	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	6p21.33	NR	rs1264332-C	0.35264300000000004	2E-22		0.0233666	[0.019-0.027] unit increase	Affymetrix [16583148] (imputed)	N
820	chr6	30848252	30848253	rs7756521	20041166	Fellay J	2009-12-24	PLoS Genet	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA		VARS2, DDR1, DPCR1	rs7756521-?	NR	1E-6	(progression)			Illumina [NR]	N
820	chr6	30849123	30849124	rs885910	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	DDR1	rs885910-T	NR	9E-9		0.0184374	[0.012-0.025] unit decrease	Affymetrix [323858] (imputed)	N
820	chr6	30849123	30849124	rs885910	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	DDR1	rs885910-T	NR	4E-8		0.0176635	[0.011-0.024] unit decrease	Affymetrix [127266] (imputed)	N
820	chr6	30857893	30857894	rs1264322	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking initiation (ever regular vs never regular)	up to 433,216 European ancestry individuals	NA	6p21.33	DDR1	rs1264322-A	0.146	2E-8		0.0171	[0.011-0.023] unit decrease	Illumina [~ 250000] (imputed)	N
820	chr6	30858253	30858254	rs7743661	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p21.33	DDR1	rs7743661-C	0.25	1E-6	(Turkish)	1.62	[1.33-1.97]	Illumina [up to 547389]	N
820	chr6	30866341	30866342	rs2524236	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	QRS duration	3,274 African American individuals, 13,420 Hispanic/Latino individuals, 126 Asian ancestry individuals, 226 Native American ancestry individuals	NA	6p21.33	HCG22	rs2524236-?	NR	1E-10		0.6324871	[0.44-0.83] unit decrease	Illumina [26566045] (imputed)	N
820	chr6	30873507	30873508	rs111782145	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	6p21.33	CDSN, DPCR1, GTF2H4	rs111782145-C	NR	2E-8	(Chinese)	1.2300123	[1.16-1.3]	Affymetrix, Illumina [up to 5107227] (imputed)	N
820	chr6	30876151	30876152	rs1052693	23028341	Yang X	2012-09-13	PLoS Genet	Genome-wide association study for serum complement C3 and C4 levels in healthy Chinese subjects.	Complement C3 and C4 levels	1,999 Han Chinese ancestry male individuals	1,496 Han Chinese ancestry male individuals	6p21.33	HLA-A	rs1052693-G	0.36	3E-48	(Serum level of C4)	0.1	[0.080-0.120] g/L increase	Illumina [1940245] (imputed)	N
820	chr6	30879635	30879636	rs886420	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p21.33	GTF2H4	rs886420-A	0.311	2E-24				Illumina [118177]	N
820	chr6	30879986	30879987	rs1264308	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Squamous cell lung carcinoma	8,350 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	6p21.33	NR	rs1264308-T	NR	6E-10		1.29	[1.19-1.40]	NR [NR] (imputed)	N
820	chr6	30879986	30879987	rs1264308	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Non-small cell lung cancer	27,120 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	6p21.33	NR	rs1264308-T	NR	2E-7		1.16	[1.1-1.23]	NR [NR] (imputed)	N
820	chr6	30884199	30884200	rs146114215	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.33		rs146114215-G	0.995	1E-22				Affymetrix [10369434] (imputed)	N
820	chr6	30884199	30884200	rs146114215	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	6p21.33		rs146114215-G	0.995	9E-15				Affymetrix [10369434] (imputed)	N
820	chr6	30884199	30884200	rs146114215	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	6p21.33		rs146114215-G	0.995	1E-16				Affymetrix [10369434] (imputed)	N
820	chr6	30884199	30884200	rs146114215	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs146114215-G	0.995	5E-26				Affymetrix [10369434] (imputed)	N
820	chr6	30887464	30887465	rs118124843	31537649	Salem RM	2019-09-19	J Am Soc Nephrol	Genome-Wide Association Study of Diabetic Kidney Disease Highlights Biology Involved in Glomerular Basement Membrane Collagen.	Microalbuminuria in type 1 diabetes	2,447 European ancestry cases, 12,113 European ancestry controls	NA	6p21.33	DDR1, VARS2	rs118124843-T	0.011	4E-8		3.79	[NR]	Illumina [up to 49000000] (imputed)	N
820	chr6	30890482	30890483	rs2074506	33909500	Moll M	2021-04-28	Am J Physiol Lung Cell Mol Physiol	A Systematic Analysis of Protein-altering Exonic Variants in Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease	up to 31,465 European ancestry cases, up to 203,688 European ancestry controls, up to 1,413 African ancestry cases, up to 6,080 African ancestry controls, up to 287 East Asian ancestry cases, up to 7,484 East Asian ancestry controls, up to 61 Hispanic cases, up to 613 Hispanic controls	NA	6p21.33	VARS2	rs2074506-G	0.65	3E-7		1.06	[1.03 -1.08]	Illumina [at least 109036]	N
820	chr6	30890870	30890871	rs753725	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	6p21.33	VARS2	rs753725-T	0.4062	1E-9		0.0205	[0.014-0.027] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
820	chr6	30890870	30890871	rs753725	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	6p21.33	VARS2	rs753725-T	0.4562	3E-7		0.020761	[0.013-0.029] mg/dL increase	Affymetrix, Illumina [8217339] (imputed)	N
820	chr6	30897773	30897774	rs2532929	28877031	Zhang G	2017-09-07	N Engl J Med	Genetic Associations with Gestational Duration and Spontaneous Preterm Birth.	Gestational age at birth (maternal effect)	43,568 European ancestry mothers	8,643 European ancestry mothers	6p21.33	SFTA2, VARS2, DPCR1	rs2532929-G	0.397	2E-6		0.622	[NR] unit decrease	Illumina [15635593] (imputed)	N
820	chr6	30899649	30899650	rs3095152	32771030	Tangtanatakul P	2020-08-08	Arthritis Res Ther	Meta-analysis of genome-wide association study identifies FBN2 as a novel locus associated with systemic lupus erythematosus in Thai population.	Systemic lupus erythematosus	487 Thai cases, 1,606 Thai controls	405 Thai cases, 1,590 Thai controls	6p21.33	SFTA2	rs3095152-A	0.03	6E-7		2.4584	[NR]	Illumina [421909] (imputed)	N
820	chr6	30900093	30900094	rs2253705	35215271	Almandil NB	2022-01-27	Pharmaceuticals (Basel)	Integration of Transcriptome and Exome Genotyping Identifies Significant Variants with Autism Spectrum Disorder.	Autism spectrum disorder	70 Arab ancestry cases, 132 Arab ancestry controls	NA	6p21.33	NA	rs2253705-A	0.125	4E-6		3.706	[2.086-6.583]	Illumina [243345]	N
820	chr6	30900426	30900427	rs2253718	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	Y_RNA	rs2253718-T	NR	3E-11		0.019062	[0.013-0.025] unit decrease	Affymetrix [319769] (imputed)	N
820	chr6	30900426	30900427	rs2253718	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	Y_RNA	rs2253718-T	NR	8E-10		0.0195334	[0.013-0.026] unit decrease	Affymetrix [323858] (imputed)	N
820	chr6	30900426	30900427	rs2253718	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	Y_RNA	rs2253718-T	NR	3E-10		0.0180687	[0.012-0.024] unit decrease	Affymetrix [319769] (imputed)	N
820	chr6	30900426	30900427	rs2253718	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	Y_RNA	rs2253718-T	NR	3E-8		0.0176831	[0.011-0.024] unit decrease	Affymetrix [127266] (imputed)	N
820	chr6	30900426	30900427	rs2253718	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	Y_RNA	rs2253718-T	NR	5E-11		0.0204362	[0.014-0.027] unit increase	Affymetrix [323123] (imputed)	N
820	chr6	30900426	30900427	rs2253718	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	Y_RNA	rs2253718-T	NR	3E-11		0.0191888	[0.014-0.025] unit decrease	Affymetrix [321169] (imputed)	N
820	chr6	30903445	30903445	rs539017487	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	6p21.33	NR	rs539017487-GT	0.365568	4E-26		0.0391332	[0.033-0.045] unit increase	Affymetrix [16577424] (imputed)	N
820	chr6	30904271	30904272	rs2844649	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	Y_RNA	rs2844649-A	NR	1E-10		0.0311282	[0.022-0.041] unit increase	Affymetrix [323123] (imputed)	N
820	chr6	30904271	30904272	rs2844649	32589924	Bi W	2020-06-23	Am J Hum Genet	A Fast and Accurate Method for Genome-Wide Time-to-Event Data Analysis and Its Application to UK Biobank.	Asthma (time to event)	25,240 British ancestry cases, 257,631 British ancestry controls	NA	6p21.33	SFTA2, DPCR149	rs2844649-?	NR	4E-8				NR [~ 24000000] (imputed)	N
820	chr6	30905312	30905313	rs3132571	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs3132571-A	0.623	3E-58				Affymetrix [10369434] (imputed)	N
820	chr6	30909407	30909408	rs2243739	33602968	Skuladottir AT	2021-02-18	Sci Rep	A meta-analysis uncovers the first sequence variant conferring risk of Bell's palsy.	Bell's palsy	4,714 European ancestry cases, 1,011,520 European ancestry controls	NA	6p21.33	DPCR1	rs2243739-C	0.3504	5E-6		0.90366	NR	Affymetrix, Illumina [30341632] (imputed)	N
820	chr6	30913457	30913458	rs3132581	23453885	Smoller JW	2013-02-27	Lancet	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NA	6p21.33	NR	rs3132581-G		2E-7	(Modelling analysis)			NR [1252901] (imputed)	N
820	chr6	30914551	30914552	rs3130781	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	DPCR1, HCG21	rs3130781-C	NR	3E-10		0.0233694	[0.016-0.031] unit increase	Affymetrix [323123] (imputed)	N
820	chr6	30914750	30914751	rs2517451	33649182	Penova M	2021-03-01	Proc Natl Acad Sci U S A	Genome wide association study of HTLV-1-associated myelopathy/tropical spastic paraparesis in the Japanese population.	HTLV-1 associated myelopathy	731 Japanese ancestry cases, 846 Japanese ancestry controls	NA	6p21.33		rs2517451-C	0.04	2E-9		2.69	[1.95-3.71]	Illumina [126394]	N
820	chr6	30919140	30919141	rs11969476	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	6p21.33	NR	rs11969476-?	NR	1E-10	(MIC-A)	1.10404	[0.77-1.44] unit increase	Illumina [11901634] (imputed)	N
820	chr6	30920123	30920124	rs3132580	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p21.33	DPCR1	rs3132580-A		3E-34		0.037	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
820	chr6	30920123	30920124	rs3132580	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	6p21.33	DPCR1	rs3132580-G	NR	2E-7		0.149993	[0.094-0.206] unit increase	Illumina [at least 950000] (imputed)	N
820	chr6	30920123	30920124	rs3132580	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.33	DPCR1	rs3132580-T	0.1379	3E-40		2.74	[NR]	Illumina [242824]	N
820	chr6	30922531	30922532	rs116020851	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p21.33	HCG21	rs116020851-C	0.971	3E-7		0.182	[0.11-0.25] unit increase	Affymetrix, Illumina [7374092] (imputed)	N
820	chr6	30923526	30923527	rs17189763	28468790	Agopian AJ	2017-06-01	Circ Cardiovasc Genet	Genome-Wide Association Studies and Meta-Analyses for Congenital Heart Defects.	Conotruncal heart defects (maternal effects)	up to 838 European ancestry trios	NA	6p21.33	GTF2H4, VARS2	rs17189763-?	NR	8E-7		1.041635	[1.024871-1.058673]	Illumina [at least 4756722] (imputed)	N
820	chr6	30923928	30923929	rs9368648	33766035	Wakim V	2021-03-25	BMC Med Genomics	New susceptibility alleles associated with severe coronary artery stenosis in the Lebanese population.	Severe coronary stenosis (family history of CAD interaction)	1,734 Middle Eastern ancestry cases, 757 Middle Eastern ancestry controls	NA	6p21.33	intergenic	rs9368648-T	NR	1E-9				Illumina [NR]	N
820	chr6	30923928	30923929	rs9368648	33766035	Wakim V	2021-03-25	BMC Med Genomics	New susceptibility alleles associated with severe coronary artery stenosis in the Lebanese population.	Severe coronary stenosis	1,734 Middle Eastern ancestry cases, 757 Middle Eastern ancestry controls	NA	6p21.33	intergenic	rs9368648-T	NR	3E-9				Illumina [NR]	N
820	chr6	30926516	30926517	rs3095156	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA	6p21.33	NR	rs3095156-?	NR	7E-6		0.0497	[0.028-0.071] unit decrease	Illumina [at least 560000] (imputed)	N
820	chr6	30931843	30931844	rs3131934	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p21.33	NR	rs3131934-?	NR	6E-8		5.421	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
820	chr6	30932222	30932223	rs138678612	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	6p21.33	NR	rs138678612-G	0.0217	1E-8		1.1235955	[1.08-1.16]	Affymetrix, Illumina [NR] (imputed)	N
821	chr6	30933793	30933794	rs3095089	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCG21	rs3095089-T	NR	3E-13		0.0287765	[0.021-0.036] unit decrease	Affymetrix [323858] (imputed)	N
821	chr6	30933793	30933794	rs3095089	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HCG21	rs3095089-T	NR	4E-12		0.0272715	[0.02-0.035] unit decrease	Affymetrix [127266] (imputed)	N
821	chr6	30933793	30933794	rs3095089	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p21.33	NR	rs3095089-?	NR	8E-13		0.0835	[0.061-0.106] unit decrease	Illumina [at least 560000] (imputed)	N
821	chr6	30933863	30933864	rs3131933	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.33		rs3131933-T	0.474	5E-17				Affymetrix [10369434] (imputed)	N
821	chr6	30933863	30933864	rs3131933	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.33	NR	rs3131933-T	0.808	7E-9	(conditional)	0.891	[0.85-0.93]	Illumina [11270530] (imputed)	N
821	chr6	30936662	30936663	rs3095086	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCG21	rs3095086-A	NR	1E-10		0.0225432	[0.016-0.029] unit decrease	Affymetrix [323858] (imputed)	N
821	chr6	30936662	30936663	rs3095086	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HCG21	rs3095086-A	NR	6E-10		0.0216316	[0.015-0.028] unit decrease	Affymetrix [127266] (imputed)	N
821	chr6	30937731	30937732	rs3131781	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p21.33	NR	rs3131781-G	0.1445	9E-9		0.0097	[0.0064-0.013] unit decrease	NR [7666894] (imputed)	N
821	chr6	30938882	30938883	rs9368649	30626913	Amare AT	2019-01-09	Mol Psychiatry	Bivariate genome-wide association analyses of the broad depression phenotype combined with major depressive disorder, bipolar disorder or schizophrenia reveal eight novel genetic loci for depression.	Broad depression or major depressive disorder (self-reported)	9,240 European ancestry broad depression cases, 9,519 European ancestry broad depression controls, 51,258 European ancestry individuals, 75,607 European ancestry self-reported major depressive disorder cases, 231,747 European ancestry self-reported major depressive disorder controls	322,580 individuals	6p21.33	MUC21	rs9368649-A	0.14	1E-8				Affymetrix, Illumina [at least 918921] (imputed)	N
821	chr6	30938882	30938883	rs9368649	23284291	Hancock DB	2012-12-20	PLoS Genet	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (smoking interaction)	50,047 European ancestry individuals	NA	6p21.33	MUC21, DPCR1	rs9368649-A	NR	1E-7	(FEV1/FVC, Pack-years)			NR [~ 2500000] (imputed)	N
821	chr6	30938882	30938883	rs9368649	23284291	Hancock DB	2012-12-20	PLoS Genet	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (smoking interaction)	50,047 European ancestry individuals	NA	6p21.33	MUC21, DPCR1	rs9368649-A	NR	1E-7	(FEV1/FVC, Ever-smoking)			NR [~ 2500000] (imputed)	N
821	chr6	30940386	30940387	rs2530710	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs2530710-?		4E-7		1.0416667	[1.03-1.06]	Illumina [7645193] (imputed)	N
821	chr6	30940386	30940387	rs2530710	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs2530710-?		1E-7		1.5151515	[1.3-1.75]	Illumina [7645193] (imputed)	N
821	chr6	30945624	30945625	rs34853064	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.33	NR	rs34853064-?	NR	6E-9				Affymetrix [~ 8270000] (imputed)	N
821	chr6	30947508	30947509	rs3094084	25827949	Kunz M	2015-05-04	Exp Dermatol	Genome-wide association study identifies new susceptibility loci for cutaneous lupus erythematosus.	Cutaneous lupus erythematosus	151 European ancestry cases, 1,288 European ancestry controls	219 European ancestry cases, 262 European ancestry controls	6p21.33	MUC21, TRIM39, RPP21	rs3094084-T	0.154	2E-11		2.3	[1.76-3.01]	Affymetrix [906600]	N
821	chr6	30950049	30950050	rs2844678	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	683 Turkish ancestry cases, 1,721 Turkish ancestry controls	NA	6p21.33	MUC21	rs2844678-?	NR	2E-42				Illumina [4495750] (imputed)	N
821	chr6	30950049	30950050	rs2844678	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	286 European ancestry cases, 2,652 European ancestry controls, 76 Han Chinese ancestry cases, 889 Han Chinese ancestry controls, 46 South Asian ancestry cases, 501 South Asian ancestry controls, 683 Turkish ancestry cases, 1,721 Turkish ancestry controls	NA	6p21.33	MUC21	rs2844678-?	NR	6E-47		2.71	NR	Illumina [up to 4495750] (imputed)	N
821	chr6	30955126	30955127	rs9262397	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Unilateral cleft lip and palate	205 Asian ancestry cases, 315 European ancestry cases, 692 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	6p21.33	NR	rs9262397-?	NR	1E-6		1.75	[1.6-1.91]	Illumina [539000] (imputed)	N
821	chr6	30959000	30959001	rs13211972	32276964	Shete S	2020-04-10	Cancer Res	A genome-wide association study identifies two novel susceptible regions for squamous cell carcinoma of the head and neck.	Oropharynx cancer	1,144 European ancestry cases, 4,493 European ancestry controls	2,328 European ancestry cases, 3,232 European ancestry controls	6p21.33	MUC21	rs13211972-A	0.05	1E-10		1.55	[1.36-1.77]	Illumina [7858089] (imputed)	N
821	chr6	30960932	30960933	rs150184132	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs150184132-C	0.961	1E-9				Affymetrix [10369434] (imputed)	N
821	chr6	30969002	30969003	rs1632862	26379185	Garcia-Etxebarria K	2015-09-17	PLoS One	No Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity.	Severe influenza A (H1N1) infection	49 European ancestry severe cases, 549 European ancestry population controls	NA	6p21.33	MUC21, MUC22	rs1632862-?	0.009311	2E-14		15.2	[6.123-37.73]	Affymetrix [547296]	N
821	chr6	30969184	30969185	rs9262437	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	683 Turkish ancestry cases, 1,721 Turkish ancestry controls	NA	6p21.33	MUC22	rs9262437-?	NR	5E-31	(conditional on rs2844678)			Illumina [4495750] (imputed)	N
821	chr6	30969937	30969938	rs6920820	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p21.33		rs6920820-?	NR	2E-9		0.0557301	[0.037-0.074] unit increase	Affymetrix [20259828] (imputed)	N
821	chr6	30972864	30972865	rs1634718	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	MUC22, MUC21	rs1634718-G	0.2540161	7E-11	(EA, Complement C4)	0.3291	[0.23-0.43] unit decrease	Affymetrix [509946]	N
821	chr6	30973164	30973165	rs1634719	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs1634719-A	0.697	1E-33				Affymetrix [10369434] (imputed)	N
821	chr6	30976218	30976219	rs28360974	23551011	Zhao L	2013-04-02	Ann Hum Genet	Genome-wide association study of pre-eclampsia detects novel maternal single nucleotide polymorphisms and copy-number variants in subsets of the Hyperglycemia and Adverse Pregnancy Outcome (HAPO) study cohort.	Preeclampsia	21 Afro-Caribbean cases, 1,010 Afro-Caribbean controls, 50 European ancestry cases, 1,202 European ancestry controls, 62 Hispanic cases, 658 Hispanic controls	NA	6p21.33	MUC21	rs28360974-?	NR	3E-6	(Afro-Caribbean)	10.13	[3.85-26.67]	Illumina [2485249] (imputed)	N
821	chr6	30976348	30976349	rs149405105	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MUC22	rs149405105-A	NR	2E-8		0.0337227	[0.022-0.045] unit increase	Affymetrix [319769] (imputed)	N
821	chr6	30976348	30976349	rs149405105	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	MUC22	rs149405105-A	NR	1E-8		0.0343316	[0.023-0.046] unit increase	Affymetrix [319769] (imputed)	N
821	chr6	30976348	30976349	rs149405105	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.33	MUC22	rs149405105-A	NR	3E-10		0.0380088	[0.026-0.05] unit increase	Affymetrix [321114] (imputed)	N
821	chr6	30976348	30976349	rs149405105	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	MUC22	rs149405105-A	NR	2E-9		0.0364062	[0.025-0.048] unit increase	Affymetrix [321169] (imputed)	N
821	chr6	30982090	30982092	rs71757905	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Chickenpox	107,769 European ancestry cases, 15,982 European ancestry controls	NA	6p21.33	NR	rs71757905-?	NR	9E-6		0.1098	[0.062-0.158] unit increase	Illumina [at least 560000] (imputed)	N
821	chr6	30982543	30982544	rs9394026	29031612	Hirata J	2017-10-12	J Invest Dermatol	Variants at HLA-A, HLA-C, and HLA-DQB1 Confer Risk of Psoriasis Vulgaris in Japanese.	Psoriasis vulgaris	282 Japanese ancestry cases, 426 Japanese ancestry controls	320 Japanese ancestry cases, 1,622 Japanese ancestry controls	6p21.33	HLA	rs9394026-G	0.197	7E-15		1.86	[1.59-2.18]	Illumina [6369185] (imputed)	N
821	chr6	30984469	30984470	rs3869097	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.33		rs3869097-T	0.32183300000000004	2E-7		1.0237832	[1.01-1.03]	Affymetrix, Illumina [9851866] (imputed)	N
821	chr6	30985827	30985828	rs1634726	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental longevity (mother's age at death)	52,776 middle-aged British individuals	NA	6p21.33	NR	rs1634726-?	NR	6E-6		0.032105	[0.018-0.046] unit increase	Affymetrix [9658292] (imputed)	N
821	chr6	30987986	30987987	rs1632870	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MUC22	rs1632870-T	NR	5E-8		0.0227309	[0.015-0.031] unit increase	Affymetrix [323123] (imputed)	N
821	chr6	30989020	30989021	rs139141104	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 142,336 Japanese ancestry controls	NA	6p21.33	MUC22	rs139141104-?	NR	1E-18		0.16637	[0.13-0.2] unit increase	Illumina [19707525] (imputed)	N
821	chr6	30989691	30989692	rs114115115	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.33		rs114115115-T	0.937	4E-16				Affymetrix [10369434] (imputed)	N
821	chr6	30989691	30989692	rs114115115	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cervical cancer	6,563 European ancestry cases, 410,350 European ancestry controls	NA	6p21.33		rs114115115-T	NR	6E-13		1.3463	NR	Affymetrix [7846216] (imputed)	N
821	chr6	30990018	30990019	rs9380210	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.33		rs9380210-A	0.72	1E-24				Affymetrix [10369434] (imputed)	N
821	chr6	30990018	30990019	rs9380210	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.33		rs9380210-A	0.72	7E-16				Affymetrix [10369434] (imputed)	N
821	chr6	30990018	30990019	rs9380210	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p21.33		rs9380210-A	0.72	5E-18				Affymetrix [10369434] (imputed)	N
821	chr6	30990054	30990055	rs1634729	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	118,886 East Asian ancestry individuals	NA	6p21.33		rs1634729-C	0.950931	3E-9		0.0534033	[0.036-0.071] unit decrease	Illumina [13474352] (imputed)	N
821	chr6	30990054	30990055	rs1634729	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MUC22	rs1634729-T	NR	3E-9		0.0248876	[0.017-0.033] unit decrease	Affymetrix [319769] (imputed)	N
821	chr6	30990054	30990055	rs1634729	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	MUC22	rs1634729-T	NR	6E-9		0.0242344	[0.016-0.032] unit decrease	Affymetrix [319769] (imputed)	N
821	chr6	30990080	30990081	rs116071718	31066027	Nicoletti P	2019-05-07	Clin Pharmacol Ther	Shared genetic risk factors across carbamazepine-induced hypersensitivity reactions.	Carbamazepine-induced serious cutaneous adverse reaction	43 European ancestry cases, 10,701 European ancestry controls	NA	6p21.33	MUC22	rs116071718-?	NR	2E-6	(conditioned on rs192543598)	3.99	[2.25-7.05]	Illumina [5271349] (imputed)	N
821	chr6	30990775	30990776	rs9394030	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	MUC22	rs9394030-A	NR	7E-9		0.0193287	[0.013-0.026] unit increase	Affymetrix [321169] (imputed)	N
821	chr6	30992723	30992724	rs1632865	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.33		rs1632865-T	0.584	6E-30				Affymetrix [10369434] (imputed)	N
821	chr6	30993498	30993499	rs2517554	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.33		rs2517554-C	0.386	7E-33				Affymetrix [10369434] (imputed)	N
821	chr6	30993812	30993813	rs62399429	33531474	Burton CL	2021-02-02	Transl Psychiatry	Genome-wide association study of pediatric obsessive-compulsive traits: shared genetic risk between traits and disorder.	Obsessive-compulsive traits	5,018 European ancestry children and adolescents	NA	6p21.33	MUC22	rs62399429-?	NR	5E-6		0.131	[0.074-0.188] unit increase	Illumina [7870334] (imputed)	N
821	chr6	30994888	30994889	rs566731348	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.33	NR	rs566731348-A	0.951	4E-12		1.889	[1.71-2.07]	Illumina [11270530] (imputed)	N
821	chr6	30997691	30997692	rs9262549	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MUC22	rs9262549-G	NR	2E-14		0.0228763	[0.017-0.029] unit increase	Affymetrix [321016] (imputed)	N
821	chr6	30997691	30997692	rs9262549	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MUC22	rs9262549-G	NR	4E-18		0.0282059	[0.022-0.035] unit increase	Affymetrix [323123] (imputed)	N
821	chr6	30998311	30998312	rs12110481	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MUC22	rs12110481-T	NR	2E-14		0.0246712	[0.018-0.031] unit decrease	Affymetrix [323123] (imputed)	N
821	chr6	31001420	31001421	rs3909113	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Sutterella)	1,068 Japanese ancestry individuals	NA	6p21.33	MUC22	rs3909113-G	0.29	3E-6		0.03	[0.017-0.043] unit decrease	Illumina [6380737] (imputed)	N
821	chr6	31001495	31001496	rs10947124	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	MUC22	rs10947124-T	NR	2E-9		0.0181143	[0.012-0.024] unit increase	Affymetrix [321169] (imputed)	N
821	chr6	31001678	31001679	rs59356242	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LRPAP1	5,365 Icelandic ancestry individuals	NA	6p21.33		rs59356242-A	0.0137	2E-11		0.546071	[0.39-0.7] unit increase	Illumina [7506463] (imputed)	N
821	chr6	31002012	31002013	rs6933349	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6p21.33		rs6933349-?	NR	1E-8		0.926525	[0.9-0.95]	NR [685523]	N
821	chr6	31002100	31002101	rs7768644	26151496	Chen PL	2015-07-07	Nat Commun	Genetic determinants of antithyroid drug-induced agranulocytosis by human leukocyte antigen genotyping and genome-wide association study.	Thionamide-induced agranulocytosis in Graves' disease	21 East Asian ancestry cases with agranulocytosis, 662 East Asian ancestry cases without agranulocytosis	21 East Asian ancestry cases with agranulocytosis, 546 East Asian ancestry cases without agranulocytosis	6p21.33	HLA	rs7768644-A	0.091	3E-13	(trend)	5.01	[3.1-8.1] (allelic)	Affymetrix [522980]	N
821	chr6	31002342	31002343	rs28732081	30037793	Haapasalo K	2018-09-21	Infect Immun	The Psoriasis Risk Allele <i>HLA-C*06:02</i> Shows Evidence of Association with Chronic or Recurrent Streptococcal Tonsillitis.	Tonsillitis	95 Finnish cases, 504 Finnish controls	NA	6p21.33	HLA-C, HLA-B	rs28732081-?		6E-6		4.7		Illumina [100000]	N
821	chr6	31002451	31002452	rs3869098	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs3869098-A	0.528	2E-32				Affymetrix [10369434] (imputed)	N
821	chr6	31002451	31002452	rs3869098	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MUC22	rs3869098-G	NR	6E-19		0.0251596	[0.02-0.031] unit increase	Affymetrix [319769] (imputed)	N
821	chr6	31002451	31002452	rs3869098	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MUC22	rs3869098-G	NR	4E-11		0.0207579	[0.015-0.027] unit increase	Affymetrix [323858] (imputed)	N
821	chr6	31002451	31002452	rs3869098	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	MUC22	rs3869098-G	NR	6E-18		0.0244083	[0.019-0.03] unit increase	Affymetrix [319769] (imputed)	N
821	chr6	31002451	31002452	rs3869098	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	MUC22	rs3869098-G	NR	6E-10		0.0194883	[0.013-0.026] unit increase	Affymetrix [127266] (imputed)	N
821	chr6	31002451	31002452	rs3869098	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MUC22	rs3869098-G	NR	1E-13		0.0208831	[0.015-0.026] unit decrease	Affymetrix [321016] (imputed)	N
821	chr6	31002451	31002452	rs3869098	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MUC22	rs3869098-G	NR	3E-16		0.0252592	[0.019-0.031] unit decrease	Affymetrix [323123] (imputed)	N
821	chr6	31002451	31002452	rs3869098	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	MUC22	rs3869098-G	NR	2E-15		0.0228249	[0.017-0.028] unit increase	Affymetrix [321169] (imputed)	N
821	chr6	31002526	31002527	rs4248153	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MUC22	rs4248153-G	NR	3E-11		0.0193381	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
821	chr6	31002526	31002527	rs4248153	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	MUC22	rs4248153-G	NR	2E-10		0.018489	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
821	chr6	31002526	31002527	rs4248153	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MUC22	rs4248153-G	NR	2E-15		0.0230515	[0.017-0.029] unit decrease	Affymetrix [321016] (imputed)	N
821	chr6	31002615	31002616	rs4248154	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.33		rs4248154-C	0.831	5E-19				Affymetrix [10369434] (imputed)	N
821	chr6	31002615	31002616	rs4248154	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Prostate cancer	10,792 European ancestry cases, 410,350 European ancestry controls	NA	6p21.33		rs4248154-T	NR	4E-8		1.1076651	NR	Affymetrix [7846216] (imputed)	N
821	chr6	31002615	31002616	rs4248154	21900946	Nakabayashi K	2011-09-08	J Hum Genet	Identification of independent risk loci for Graves' disease within the MHC in the Japanese population.	Graves' disease	1,119 Japanese ancestry cases, 2,718 Japanese ancestry controls	432 Japanese ancestry cases, 1,157 Japanese ancestry controls	6p21.33	MHC	rs4248154-C	0.54	1E-13		1.38	[1.27-1.50]	Perlegen [268068]	N
821	chr6	31003468	31003469	rs34416364	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6p21.33	NR	rs34416364-G	0.90442	8E-9		1.0608954	[1.04-1.08]	Affymetrix [15688218] (imputed)	N
821	chr6	31003468	31003469	rs34416364	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	6p21.33	NR	rs34416364-?	NR	4E-6		0.0711	[0.041-0.101] unit decrease	Illumina [at least 560000] (imputed)	N
821	chr6	31005431	31005432	rs11753208	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	MUC22	rs11753208-T	0.08492462	2E-13	(EA, MHC class I polypeptide-related sequence A)	0.5826	[0.43-0.74] unit decrease	Affymetrix [509946]	N
821	chr6	31005463	31005464	rs9262555	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	6p21.33	NR	rs9262555-?	NR	6E-13		7.194	NR z score decrease	Illumina [at least 830937] (imputed)	N
821	chr6	31005489	31005490	rs141397370	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LRPAP1	5,361 Icelandic ancestry individuals	NA	6p21.33		rs141397370-T	0.01079	3E-25		0.911048	[0.74-1.08] unit increase	Illumina [7506463] (imputed)	N
821	chr6	31005725	31005726	rs2844670	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MUC22	rs2844670-G	NR	2E-9		0.0247626	[0.017-0.033] unit increase	Affymetrix [323123] (imputed)	N
821	chr6	31006854	31006855	rs2844665	21801394	Genin E	2011-07-29	Orphanet J Rare Dis	Genome-wide association study of Stevens-Johnson Syndrome and Toxic Epidermal Necrolysis in Europe.	Drug-induced Stevens-Johnson syndrome or toxic epidermal necrolysis (SJS/TEN)	424 European ancestry cases, 1,881 European ancestry controls	NA	6p21.33	C6orf205	rs2844665-C	0.62	3E-7		1.54	[1.30-1.82]	Illumina [268914]	N
821	chr6	31006993	31006994	rs9262558	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Osteoporosis	8,520 European ancestry cases, 479,981 European ancestry controls, 9,794 East Asian ancestry cases, 168,932 East Asian ancestry controls	NA	6p21.33		rs9262558-T	NR	3E-8		0.1429	[0.092-0.194] unit decrease	Affymetrix, Illumina [25844994] (imputed)	N
821	chr6	31007123	31007124	rs115730672	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Treatment or medication use - insulin product (UKB data field 20003_1140883066)	4,469 European ancestry cases, 451,807 European ancestry controls	NA	6p21.33		rs115730672-C	0.005712	3E-11		1.05	[0.74-1.36] unit increase	NR [11842647] (imputed)	N
821	chr6	31010046	31010047	rs150180633	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p21.33	NR	rs150180633-?	NR	4E-14		0.3518	[0.26-0.44] unit increase	Illumina [at least 560000] (imputed)	N
821	chr6	31010184	31010185	rs116353863	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	6p21.33	MHC	rs116353863-C	0.0165	9E-9		1.2	[1.13-1.27]	Affymetrix, Illumina [16900397] (imputed)	N
821	chr6	31011906	31011906	rs770655224	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.33	MUC22	rs770655224-G	0.8871	4E-7		0.0673	[0.041-0.093] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
821	chr6	31011925	31011926	rs12528596	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	6p21.33	Intergenic	rs12528596-T	NR	1E-7		0.0242361	[0.015-0.033] unit decrease	Illumina [13519193] (imputed)	N
821	chr6	31012179	31012180	rs10456389	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MUC22	rs10456389-T	NR	2E-9		0.0238148	[0.016-0.032] unit decrease	Affymetrix [321016] (imputed)	N
821	chr6	31013350	31013351	rs17190106	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)(bidirectional)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.33		rs17190106-G	NR	2E-10				Affymetrix [7846216] (imputed)	N
821	chr6	31016185	31016186	rs73727186	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	6p21.33	HCG22, MUC22, MUC21, C6orf15, PSORS1C1, CDSN, PSORS1C2, CCHCR1, DPCR1, TCF19, POU5F1, SFTA2, VARS2, PSORS1C3, GTF2H4, DDR1, HCG27, MIR4640	rs73727186-?		6E-6	(heterogeneous)	0.235	[0.13-0.34] unit increase	Illumina [1492601] (imputed)	N
821	chr6	31016185	31016186	rs73727186	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	6p21.33	HCG22, MUC22, MUC21, C6orf15, PSORS1C1, CDSN, PSORS1C2, CCHCR1, DPCR1, TCF19, POU5F1, SFTA2, VARS2, PSORS1C3, GTF2H4, DDR1, HCG27, MIR4640	rs73727186-?		5E-6	(dominant)	0.233	[-0.43732-0.90332] unit increase	Illumina [1492601] (imputed)	N
821	chr6	31016977	31016978	rs2251830	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	6p21.33	HCG22	rs2251830-A	0.36	5E-22		0.053	[0.041-0.065] unit increase	Affymetrix, Illumina [2704730] (imputed)	N
821	chr6	31018406	31018407	rs2517532	22493691	Eriksson N	2012-04-06	PLoS One	Novel associations for hypothyroidism include known autoimmune risk loci.	Hypothyroidism	3,736 European ancestry cases, 35,546 European ancestry controls	NA	6p21.33	HLA-C, LOC729792, HCG22, C6orf15, DHFRP2, HCP5, HLA-B	rs2517532-G	0.597	1E-8		1.16	[1.10-1.22]	Illumina [870065]	N
821	chr6	31018545	31018546	rs2523864	25813999	Jeong S	2015-04-01	Invest Ophthalmol Vis Sci	Identification of a Novel Mucin Gene HCG22 Associated With Steroid-Induced Ocular Hypertension.	Change in intraocular pressure in response to steroid treatment (triamcinolone acetonide)	64 European ancestry individuals	49 European ancestry individuals	6p21.33	HCG22, HLA-A, HLA-B, MUC22	rs2523864-T	0.412	5E-9				Illumina [1545328]	N
821	chr6	31020270	31020271	rs9262602	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p21.33	NR	rs9262602-G	0.132	2E-8	(IFNAR2_of_CD20p)			Illumina [5084123] (imputed)	N
821	chr6	31020527	31020528	rs77203474	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Antisaccade task score	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	6p21.33	HCG22	rs77203474-A	NR	3E-6		0.1378235	[0.079-0.197] unit decrease	Illumina [> 6200000] (imputed)	N
821	chr6	31020932	31020933	rs4713428	26584805	Dorajoo R	2015-11-19	Genes Nutr	A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.	Plasma omega-3 polyunsaturated fatty acid level (eicosapentaenoic acid)	717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls	NA	6p21.33	NR	rs4713428-G	0.294	7E-6		0.0854	[0.048-0.123] unit decrease	Illumina [up to 1980188] (imputed)	N
821	chr6	31022157	31022158	rs2523855	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCG22	rs2523855-C	NR	2E-10		0.0207136	[0.014-0.027] unit decrease	Affymetrix [323123] (imputed)	N
821	chr6	31022827	31022828	rs2905757	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCG22	rs2905757-T	NR	5E-12		0.0207441	[0.015-0.027] unit increase	Affymetrix [319769] (imputed)	N
821	chr6	31022827	31022828	rs2905757	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HCG22	rs2905757-T	NR	3E-11		0.0199898	[0.014-0.026] unit increase	Affymetrix [319769] (imputed)	N
821	chr6	31022827	31022828	rs2905757	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCG22	rs2905757-T	NR	3E-8		0.0166947	[0.011-0.023] unit decrease	Affymetrix [321016] (imputed)	N
821	chr6	31024600	31024601	rs9262631	26151496	Chen PL	2015-07-07	Nat Commun	Genetic determinants of antithyroid drug-induced agranulocytosis by human leukocyte antigen genotyping and genome-wide association study.	Thionamide-induced agranulocytosis in Graves' disease	21 East Asian ancestry cases with agranulocytosis, 662 East Asian ancestry cases without agranulocytosis	21 East Asian ancestry cases with agranulocytosis, 546 East Asian ancestry cases without agranulocytosis	6p21.33	HLA	rs9262631-A	0.063	6E-19	(trend)	7.09	[4.32-11.63] (allelic)	Affymetrix [522980]	N
821	chr6	31024807	31024808	rs9262632	21051598	Pereyra F	2010-11-04	Science	The major genetic determinants of HIV-1 control affect HLA class I peptide presentation.	HIV-1 control	516 European cases, 1,196 European controls, 341 African American cases, 892 African American controls, 117 Hispanic cases, 560 Hispanic controls	NA	6p21.33	intergenic	rs9262632-G	0.10	1E-8	(AA)	3.1	[NR]	Illumina [1384048] (imputed)	N
821	chr6	31026235	31026236	rs76541615	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	6p21.33	MHC-region	rs76541615-T	0.796	1E-17		1.08	[1.06-1.09]	Affymetrix, Illumina [11800000] (imputed)	N
821	chr6	31027335	31027336	rs2517521	32589924	Bi W	2020-06-23	Am J Hum Genet	A Fast and Accurate Method for Genome-Wide Time-to-Event Data Analysis and Its Application to UK Biobank.	Hyperlipidemia (time to event)	35,623 British ancestry cases, 247,248 British ancestry controls	NA	6p21.33	HCG22	rs2517521-?	NR	3E-8				NR [~ 24000000] (imputed)	N
821	chr6	31027335	31027336	rs2517521	32589924	Bi W	2020-06-23	Am J Hum Genet	A Fast and Accurate Method for Genome-Wide Time-to-Event Data Analysis and Its Application to UK Biobank.	Essential hypertension (time to event)	76,566 British ancestry cases, 206,305 British ancestry controls	NA	6p21.33	HCG2248	rs2517521-?	NR	4E-8				NR [~ 24000000] (imputed)	N
821	chr6	31027568	31027569	rs78725346	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.33	NR	rs78725346-A	0.01045	3E-8	(CKB)	0.03173	NR unit increase	Illumina [1671387] (imputed)	N
821	chr6	31029281	31029282	rs2523842	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCG22	rs2523842-A	NR	2E-9		0.0493584	[0.033-0.066] unit decrease	Affymetrix [321016] (imputed)	N
821	chr6	31029454	31029455	rs9262651	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HCG22	rs9262651-T	NR	3E-11		0.0220473	[0.016-0.029] unit increase	Affymetrix [321169] (imputed)	N
821	chr6	31030121	31030122	rs2517510	21738480	Nalls MA	2011-07-01	PLoS Genet	Multiple loci are associated with white blood cell phenotypes.	White blood cell count	19,509 European ancestry individuals	11,823 European ancestry individuals	6p21.33	PSORS1C1, MUC21, HCG22, C6orf15, CCHCR1, CDSN, PSORS1C2	rs2517510-T		4E-13	(WBC)	0.0129	[0.0094-0.0164] unit decrease	Affymetrix, Illumina [> 2400000] (imputed)	N
821	chr6	31033642	31033643	rs149917912	33841421	Li J	2021-03-25	Front Immunol	Variants at the MHC Region Associate With Susceptibility to <i>Clostridioides difficile</i> Infection: A Genome-Wide Association Study Using Comprehensive Electronic Health Records.	Clostridioides difficle infection	1,160 European ancestry cases, 14,144 European ancestry controls	NA	6p21.33	NR	rs149917912-C	0.0242	5E-6		1.67	[1.37-2]	Illumina [64973696] (imputed)	N
821	chr6	31034330	31034331	rs75056122	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.33	NR	rs75056122-T	0.01045	3E-8	(CKB)	0.03173	NR unit increase	Illumina [1671387] (imputed)	N
821	chr6	31034594	31034595	rs3094089	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCG22	rs3094089-C	NR	1E-9		0.021023	[0.014-0.028] unit decrease	Affymetrix [323858] (imputed)	N
821	chr6	31034594	31034595	rs3094089	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HCG22	rs3094089-C	NR	7E-9		0.0200851	[0.013-0.027] unit decrease	Affymetrix [127266] (imputed)	N
821	chr6	31035190	31035191	rs3132567	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HCG22	rs3132567-T	NR	3E-8		0.0202317	[0.013-0.027] unit decrease	Affymetrix [319769] (imputed)	N
821	chr6	31035551	31035552	rs192064582	32141793	Garman L	2020-03-06	Ocul Immunol Inflamm	Genome-Wide Association Study of Ocular Sarcoidosis Confirms HLA Associations and Implicates Barrier Function and Autoimmunity in African Americans.	Ocular sarcoidosis	260 African American cases, 1,551 African American controls	NA	6p21.33	NR	rs192064582-T	NR	8E-6		1.747	[1.37-2.23]	Illumina [13976150] (imputed)	N
821	chr6	31035571	31035572	rs184099286	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	QRS duration	3,274 African American individuals, 13,420 Hispanic/Latino individuals, 126 Asian ancestry individuals, 226 Native American ancestry individuals	NA	6p21.33	HCG22	rs184099286-?	NR	5E-9	(Hispanic/Latino)	1.17582	[0.78-1.57] unit decrease	Illumina [26566045] (imputed)	N
821	chr6	31040655	31040655	rs145214406	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.33	NR	rs145214406-CAA	0.012	1E-12		0.593265	[0.43-0.76] unit increase	Affymetrix [up to 8900000] (imputed)	N
821	chr6	31043930	31043931	rs2517481	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Growth differentiation factor-15 levels	21,758 European ancestry individuals	9,173 individuals	6p21.33		rs2517481-C	0.41	3E-9		0.0481	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
821	chr6	31046493	31046494	rs2517474	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small LDL	115,082 European ancestry individuals	NA	6p21.33		rs2517474-G	0.542926	2E-8		0.023198	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
821	chr6	31046493	31046494	rs2517474	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium LDL	115,082 European ancestry individuals	NA	6p21.33		rs2517474-G	0.542926	1E-9		0.0250618	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
821	chr6	31046493	31046494	rs2517474	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium LDL	115,082 European ancestry individuals	NA	6p21.33		rs2517474-G	0.542926	7E-9		0.0240182	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
821	chr6	31046493	31046494	rs2517474	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small LDL	115,082 European ancestry individuals	NA	6p21.33		rs2517474-G	0.542926	3E-8		0.0228734	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
821	chr6	31046493	31046494	rs2517474	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	6p21.33		rs2517474-G	0.542926	2E-9		0.0247017	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
821	chr6	31046493	31046494	rs2517474	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	RNU6-1133P	rs2517474-A	NR	8E-10		0.0173534	[0.012-0.023] unit increase	Affymetrix [319769] (imputed)	N
821	chr6	31046493	31046494	rs2517474	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	RNU6-1133P	rs2517474-A	NR	9E-9		0.0162462	[0.011-0.022] unit increase	Affymetrix [319769] (imputed)	N
821	chr6	31046493	31046494	rs2517474	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	RNU6-1133P	rs2517474-A	NR	7E-9		0.0163369	[0.011-0.022] unit decrease	Affymetrix [321016] (imputed)	N
821	chr6	31046493	31046494	rs2517474	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	RNU6-1133P	rs2517474-A	NR	3E-9		0.0169233	[0.011-0.023] unit increase	Affymetrix [321169] (imputed)	N
821	chr6	31048214	31048215	rs373537558	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	6p21.33	RNU6-1133P	rs373537558-A	0.9873	1E-12		0.0855	[0.062-0.109] unit increase	Affymetrix [18391927] (imputed)	N
821	chr6	31050347	31050348	rs9263475	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4 on CD39+ secreting CD4 regulatory T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs9263475-G	0.51353	1E-12		0.2076	[0.15-0.26] unit increase	Illumina [17954496] (imputed)	N
821	chr6	31050347	31050348	rs9263475	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.33	Intergenic	rs9263475-G	NR	6E-9	(women)	0.0308596	[0.02-0.041] unit decrease	Illumina [13520550] (imputed)	N
821	chr6	31050347	31050348	rs9263475	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.33	Intergenic	rs9263475-G	NR	2E-9		0.0221293	[0.015-0.029] unit decrease	Illumina [13520550] (imputed)	N
821	chr6	31052631	31052632	rs28732092	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p21.33	NR	rs28732092-T	0.0787	5E-7		0.011	[0.0067-0.0153] unit increase	NR [7666894] (imputed)	N
821	chr6	31053740	31053741	rs2535307	28132517	Xie W	2017-01-28	AIDS Res Hum Retroviruses	Genome-Wide Analyses Reveal Gene Influence on HIV Disease Progression and HIV-1C Acquisition in Southern Africa.	HIV progression (CD4 and viral load)	556 Motswana ancestry cases	NA	6p21.33	HCG22	rs2535307-C	0.48	4E-7				Illumina [NR]	N
821	chr6	31054380	31054381	rs2535305	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	RNU6-1133P	rs2535305-G	NR	8E-10		0.0178493	[0.012-0.024] unit increase	Affymetrix [321169] (imputed)	N
821	chr6	31055017	31055018	rs12527394	29534301	Nishida N	2018-03-13	Hepatology	Key HLA-DRB1-DQB1 haplotypes and role of the BTNL2 gene for response to a hepatitis B vaccine.	Response to hepatitis B vaccine	107 Japanese ancestry low responder individuals, 351 Japanese ancestry intermediate responder individuals, 735 Japanese ancestry high responder individuals	NA	6p21.33	C6orf15	rs12527394-?		5E-8		0.174	unit decrease	Affymetrix [427664]	N
821	chr6	31058177	31058178	rs4947296	31050781	Zhao SX	2019-05-03	JAMA Netw Open	Assessment of Molecular Subtypes in Thyrotoxic Periodic Paralysis and Graves Disease Among Chinese Han Adults: A Population-Based Genome-Wide Association Study.	Thyrotoxic hypokalemic periodic paralysis and Graves disease	171 Han Chinese ancestry cases, 2,160 Han Chinese ancestry controls	362 Han Chinese ancestry cases, 1,089 Han Chinese ancestry controls	6p21.33	C6orf15	rs4947296-?	0.14	3E-22		2.06	[1.77-2.39]	Illumina [2752055] (imputed)	N
821	chr6	31058177	31058178	rs4947296	23001997	Hou S	2012-12-06	Arthritis Rheum	Identification of a susceptibility locus in STAT4 for Behcet's disease in Han Chinese in a genome-wide association study.	Behcet's disease	147 Han Chinese ancestry cases, 951 Han Chinese ancestry controls	554 Han Chinese ancestry cases, 1,159 Han Chinese ancestry controls	6p21.33	HCG22	rs4947296-?	NR	1E-11		2.57	[1.96-3.37]	Affymetrix [661736]	N
821	chr6	31058177	31058178	rs4947296	21841780	Chu X	2011-08-14	Nat Genet	A genome-wide association study identifies two new risk loci for Graves' disease.	Graves' disease	1,468 Chinese ancestry cases, 1,490 Chinese ancestry controls	3,994 Chinese ancestry cases, 3,510 Chinese ancestry controls	6p21.33	MUC21, C6orf15	rs4947296-C	0.14	4E-51		1.77	[1.65-1.91]	Illumina [486049]	N
821	chr6	31058339	31058340	rs3130544	23263863	Li J	2012-12-20	Hum Mol Genet	GWAS of blood cell traits identifies novel associated loci and epistatic interactions in Caucasian and African-American children.	Hematology traits	7,943 African American children, 6,234 European ancestry children	NA	6p21.33	PSORS1C1, MUC21, HCG22, C6orf15, CCHCR1, CDSN, PSORS1C2	rs3130544-A	NR	5E-7	(WBC)	0.0189	[0.011-0.026] unit decrease	Illumina [544917]	N
821	chr6	31058339	31058340	rs3130544	23055271	Gregersen PK	2012-07-16	Ann Neurol	Risk for myasthenia gravis maps to a (151) Pro->Ala change in TNIP1 and to human leukocyte antigen-B*08.	Myasthenia gravis	400 European ancestry cases, 5,505 European ancestry controls	249 European ancestry cases, 3,415 European ancestry controls	6p21.33	NR	rs3130544-A	0.13	2E-90		5.64	[4.77-6.67]	Illumina [274256]	N
821	chr6	31058339	31058340	rs3130544	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.33	intergenic	rs3130544-A	0.1238	9E-58		3.34	[NR]	Illumina [242824]	N
821	chr6	31059461	31059462	rs2535298	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p21.33	NR	rs2535298-?	NR	1E-6		0.0761	[0.046-0.107] unit increase	Illumina [at least 560000] (imputed)	N
821	chr6	31060218	31060219	rs2535296	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p21.33	NR	rs2535296-?	NR	3E-12		0.0858	[0.062-0.11] unit decrease	Illumina [at least 560000] (imputed)	N
821	chr6	31061560	31061561	rs3094087	33227023	Wang Y	2020-11-23	PLoS Genet	Genome-wide association study identifies 16 genomic regions associated with circulating cytokines at birth.	IgA levels	8,318 European ancestry individuals	NA	6p21.33	HLA	rs3094087-T	0.15	2E-10		0.1	[0.080-0.120] unit increase	Illumina [~ 9000000] (imputed)	N
821	chr6	31063412	31063413	rs3130967	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	RNU6-1133P	rs3130967-T	NR	2E-9		0.0334393	[0.023-0.044] unit increase	Affymetrix [323123] (imputed)	N
822	chr6	31065036	31065037	rs146508039	33841421	Li J	2021-03-25	Front Immunol	Variants at the MHC Region Associate With Susceptibility to <i>Clostridioides difficile</i> Infection: A Genome-Wide Association Study Using Comprehensive Electronic Health Records.	Clostridioides difficle infection in antibiotics-users	587 European ancestry cases, 3,166 European ancestry controls	NA	6p21.33	NR	rs146508039-T	0.025	5E-7		2.24	[1.7-2.88]	Illumina [64973696] (imputed)	N
822	chr6	31065070	31065071	rs3130968	34601942	van Zuydam NR	2021-10-04	Circ Genom Precis Med	Genome-Wide Association Study of Peripheral Artery Disease.	Peripheral artery disease	12,086 European ancestry cases, 449,548 European ancestry controls	31,307 cases, 211,753 controls, 3,164 East Asian ancestry cases, 20,134 East Asian ancestry controls	6p21.33		rs3130968-T	0.19	3E-12		1.07	[1.05-1.09]	Affymetrix, Illumina [NR] (imputed)	N
822	chr6	31065070	31065071	rs3130968	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	C6orf15	rs3130968-T	NR	4E-9		0.0219861	[0.015-0.029] unit decrease	Affymetrix [319769] (imputed)	N
822	chr6	31065070	31065071	rs3130968	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	C6orf15	rs3130968-T	NR	4E-8		0.0204516	[0.013-0.028] unit decrease	Affymetrix [319769] (imputed)	N
822	chr6	31065070	31065071	rs3130968	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	C6orf15	rs3130968-T	NR	7E-9		0.0218317	[0.014-0.029] unit decrease	Affymetrix [321169] (imputed)	N
822	chr6	31065070	31065071	rs3130968	31285632	Klarin D	2019-07-08	Nat Med	Genome-wide association study of peripheral artery disease in the Million Veteran Program.	Peripheral artery disease	24,009 European ancestry cases, 150,983 European ancestry controls, 5,373 African ancestry cases, 42,485 African ancestry controls, 1,925 Hispanic cases, 18,285 Hispanic controls	5,117 European ancestry cases, 389,291 European ancestry controls	6p21.33	HLA-B	rs3130968-T	0.1371	3E-10		1.07	[1.05-1.10]	Affymetrix [at least 20323458] (imputed)	N
822	chr6	31065116	31065117	rs149396823	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	6p21.33		rs149396823-A	0.00992199999999999	1E-11		0.07646505	[0.054-0.099] unit increase	Affymetrix [93095623] (imputed)	N
822	chr6	31066632	31066633	rs144846110	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p21.33	C6orf15	rs144846110-G	NR	1E-10		0.0272233	[0.019-0.036] unit decrease	Affymetrix [323858] (imputed)	N
822	chr6	31067263	31067264	rs9263523	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Prostate cancer	11,599 European ancestry cases, 199,628 European ancestry controls, 5,672 East Asian ancestry cases, 84,660 East Asian ancestry controls	NA	6p21.33		rs9263523-T	NR	1E-10		0.0949	[0.066-0.124] unit decrease	Affymetrix, Illumina [25775424] (imputed)	N
822	chr6	31067549	31067550	rs4371876	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4 on HLA DR+ CD4+ T cell	3,060 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs4371876-A	0.51058	2E-10		0.1831	[0.13-0.24] unit increase	Illumina [18012714] (imputed)	N
822	chr6	31067992	31067992	rs200788140	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4 on activated CD4 regulatory T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs200788140-AT	0.35258	7E-11		0.2109	[0.15-0.27] unit increase	Illumina [17954496] (imputed)	N
822	chr6	31067992	31067992	rs200788140	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4 on CD39+ activated CD4 regulatory T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs200788140-AT	0.35258	8E-15		0.2502	[0.19-0.31] unit increase	Illumina [17954496] (imputed)	N
822	chr6	31069526	31069527	rs9263567	21844884	Wheeler HE	2011-08-16	Pharmacogenomics J	Genome-wide meta-analysis identifies variants associated with platinating agent susceptibility across populations.	Response to platinum-based chemotherapy (cisplatin)	176 Sub-Saharan African ancestry lymphoblastoid cell lines, 83 African ancestry lymphoblastoid cell lines, 175 East Asian ancestry lymphoblastoid cell lines, 174 European ancestry lymphoblastoid cell lines	NA	6p21.33	intergenic	rs9263567-?		5E-6				NR [~ 3000000] (imputed)	N
822	chr6	31069526	31069527	rs9263567	21844884	Wheeler HE	2011-08-16	Pharmacogenomics J	Genome-wide meta-analysis identifies variants associated with platinating agent susceptibility across populations.	Response to platinum-based chemotherapy (carboplatin)	176 Sub-Saharan African ancestry lymphoblastoid cell lines, 83 African ancestry lymphoblastoid cell lines, 175 East Asian ancestry lymphoblastoid cell lines, 174 European ancestry lymphoblastoid cell lines	NA	6p21.33	intergenic	rs9263567-?		2E-6				NR [~ 3000000] (imputed)	N
822	chr6	31073092	31073093	rs9263622	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.33		rs9263622-T	0.603	5E-29				Affymetrix [10369434] (imputed)	N
822	chr6	31074029	31074030	rs6457327	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Prostate cancer	7,438 White British ancestry cases, 118,206 White British ancestry controls	NA	6p21.33		rs6457327-?	NR	5E-8		1.1003	[1.07-1.13]	NR [680312]	N
822	chr6	31074029	31074030	rs6457327	20639881	Conde L	2010-07-18	Nat Genet	Genome-wide association study of follicular lymphoma identifies a risk locus at 6p21.32.	Follicular lymphoma	681 European ancestry cases, 750 European ancestry controls	up to 3,164 European ancestry cases, 6,208 European ancestry controls	6p21.33	C6orf15	rs6457327-C	0.56	7E-6	(FL)	1.47	[1.27-1.72]	Illumina [312768]	N
822	chr6	31074029	31074030	rs6457327	19620980	Skibola CF	2009-07-20	Nat Genet	Genetic variants at 6p21.33 are associated with susceptibility to follicular lymphoma.	Follicular lymphoma	189 European ancestry cases, 592 European controls	456 European ancestry cases, 2,785 European ancestry controls	6p21.33	STG, PSORS1	rs6457327-C	0.62	5E-11		1.69	[1.43-2.00]	Illumina [~ 500000]	N
822	chr6	31075601	31075604	rs141232332	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	C6orf15	rs141232332-G	0.439	2E-17	(Leukocyte immunoglobulin-like receptor subfamily B member 1, LILRB1.5090.49.2)	0.21	[0.17-0.25] unit increase	Affymetrix [10572788] (imputed)	N
822	chr6	31077238	31077239	rs2517473	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	6p21.33	C6orf15	rs2517473-C	0.92125	2E-8		0.0215969	[0.014-0.029] unit decrease	Affymetrix [NR] (imputed)	N
822	chr6	31078614	31078615	rs1265057	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p21.33	C6orf15	rs1265057-C	0.491	2E-6		0.053	[0.031-0.075] unit decrease	Affymetrix, Illumina [7374092] (imputed)	N
822	chr6	31078808	31078809	rs3132556	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	6p21.33	NR	rs3132556-A	0.150099	4E-8		0.048321012	[0.031-0.066] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
822	chr6	31078808	31078809	rs3132556	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	6p21.33	NR	rs3132556-T	0.184341545793891	8E-15		0.012361368	[0.0092-0.0155] unit decrease	NR [NR]	N
822	chr6	31078808	31078809	rs3132556	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	6p21.33	NR	rs3132556-T	0.184341545793891	2E-14		0.015899843	[0.012-0.02] unit decrease	NR [NR]	N
822	chr6	31078808	31078809	rs3132556	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	6p21.33	NR	rs3132556-T	0.184341545793891	9E-15		0.010477979	[0.0078-0.0131] unit decrease	NR [NR]	N
822	chr6	31078808	31078809	rs3132556	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.33	ATP6V1G2, ATP6V1G2-DDX39B, C6orf15, CCHCR1, CDSN, DDR1, DDX39B, DPCR1, FLOT1, GTF2H4, HCG22, HCG26, HCG27, HCP5, HLA-B, HLA-C, IER3, LINC00243, LTA, MCCD1, MICA, MICB, MIR4640, MIR6891, MUC21, MUC22, NFKBIL1, POU5F1, PSORS1C1, PSORS1C2, PSORS1C3, SFTA2, SNORD117, SNORD84, TCF19, TNF, TUBB, VARS2	rs3132556-A		1E-9		1.08	[1.05-1.11]	Affymetrix, Illumina [NR]	N
822	chr6	31079643	31079644	rs2233980	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	6p21.33	NR	rs2233980-A	0.130672432110858	1E-18		0.01198786	[0.0093-0.0147] unit decrease	NR [NR]	N
822	chr6	31080015	31080016	rs2233974	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	C6orf15	rs2233974-G	NR	3E-9		0.020957	[0.014-0.028] unit increase	Affymetrix [321016] (imputed)	N
822	chr6	31080015	31080016	rs2233974	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p21.33	C6orf15	rs2233974-C	0.377	8E-27				Illumina [118177]	N
822	chr6	31080703	31080704	rs1265051	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	C6orf15	rs1265051-G	NR	2E-8		0.0200002	[0.013-0.027] unit increase	Affymetrix [319769] (imputed)	N
822	chr6	31080703	31080704	rs1265051	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	C6orf15	rs1265051-G	NR	4E-8		0.0193546	[0.012-0.026] unit increase	Affymetrix [319769] (imputed)	N
822	chr6	31081204	31081205	rs2233956	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	C6orf15	rs2233956-C	NR	9E-13		0.0241887	[0.018-0.031] unit decrease	Affymetrix [319769] (imputed)	N
822	chr6	31081204	31081205	rs2233956	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	C6orf15	rs2233956-C	NR	3E-18		0.0327829	[0.025-0.04] unit decrease	Affymetrix [323858] (imputed)	N
822	chr6	31081204	31081205	rs2233956	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	C6orf15	rs2233956-C	NR	8E-12		0.0231628	[0.017-0.03] unit decrease	Affymetrix [319769] (imputed)	N
822	chr6	31081204	31081205	rs2233956	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	C6orf15	rs2233956-C	NR	2E-17		0.0319326	[0.025-0.039] unit decrease	Affymetrix [127266] (imputed)	N
822	chr6	31081204	31081205	rs2233956	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	C6orf15	rs2233956-C	NR	9E-10		0.0207055	[0.014-0.027] unit increase	Affymetrix [321016] (imputed)	N
822	chr6	31081204	31081205	rs2233956	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	C6orf15	rs2233956-C	NR	6E-9		0.0214605	[0.014-0.029] unit increase	Affymetrix [323123] (imputed)	N
822	chr6	31081204	31081205	rs2233956	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	C6orf15	rs2233956-C	NR	3E-9		0.0203515	[0.014-0.027] unit decrease	Affymetrix [321169] (imputed)	N
822	chr6	31081204	31081205	rs2233956	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in ever smokers	23,223 European ancestry cases,  16,964 European ancestry controls	NA	6p21.33	C6orf15	rs2233956-C	0.167124691	5E-16		1.1730286	[1.128692308-1.219106364]	Illumina [10439017] (imputed)	N
822	chr6	31081204	31081205	rs2233956	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.33	intergenic	rs2233956-G	0.1813	6E-48		2.77	[NR]	Illumina [242824]	N
822	chr6	31081250	31081251	rs2233955	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	C6orf15	rs2233955-A	NR	1E-9		0.0215169	[0.015-0.028] unit increase	Affymetrix [319769] (imputed)	N
822	chr6	31081250	31081251	rs2233955	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	C6orf15	rs2233955-A	NR	4E-9		0.0208588	[0.014-0.028] unit increase	Affymetrix [319769] (imputed)	N
822	chr6	31081408	31081409	rs1265048	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	C6orf15	rs1265048-C	NR	1E-8		0.0172428	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
822	chr6	31081408	31081409	rs1265048	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	C6orf15	rs1265048-C	NR	2E-9		0.0182055	[0.012-0.024] unit decrease	Affymetrix [321016] (imputed)	N
822	chr6	31081408	31081409	rs1265048	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	C6orf15	rs1265048-C	NR	4E-10		0.0206963	[0.014-0.027] unit decrease	Affymetrix [323123] (imputed)	N
822	chr6	31081408	31081409	rs1265048	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	C6orf15	rs1265048-C	NR	4E-8		0.0167663	[0.011-0.023] unit increase	Affymetrix [321169] (imputed)	N
822	chr6	31081408	31081409	rs1265048	32421744	Gzara C	2020-05-18	PLoS Pathog	Family-based genome-wide association study of leprosy in Vietnam.	Leprosy	1,749 Vietnamese ancestry cases	1,181 Vietnamese ancestry cases, 688 Vietnamese ancestry controls	6p21.33	C6orf15	rs1265048-T	0.51	6E-11		1.4492754	[1.25-1.72]	Illumina [5607170] (imputed)	N
822	chr6	31081408	31081409	rs1265048	30013184	Waage J	2018-07-16	Nat Genet	Genome-wide association and HLA fine-mapping studies identify risk loci and genetic pathways underlying allergic rhinitis.	Allergic sensitization	8,040 European ancestry cases, 16,441 European ancestry controls	NA	6p21.33	C5orf15, PSORS1C1	rs1265048-T	0.64	1E-7		1.1235955	[1.08-1.18]	Affymetrix, Illumina [16531985] (imputed)	N
822	chr6	31081433	31081434	rs3094222	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Waist-hip ratio and HDL-C (pairwise)	402,477 European ancestry individuals, 11,333 East Asian, South Asian, Hispanic and African American ancestry individuals	NA	6p21.33	C6orf15-PSORS1C1	rs3094222-A	0.9135	1E-11				Affymetrix, Illumina [2331072] (imputed)	N
822	chr6	31081433	31081434	rs3094222	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	6p21.33	C6orf15, PSORS1C1	rs3094222-G	0.108346341	9E-17		1.1642892	[1.123294727-1.206779842]	Illumina [10439017] (imputed)	N
822	chr6	31081463	31081464	rs1265047	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	Intergenic	rs1265047-G	0.3485915	2E-17	(EA, MHC class I polypeptide-related sequence A)	0.3847	[0.3-0.47] unit increase	Affymetrix [509946]	N
822	chr6	31081939	31081940	rs3130976	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	PSORS1C1	rs3130976-C	NR	1E-8		0.0197052	[0.013-0.026] unit decrease	Affymetrix [323858] (imputed)	N
822	chr6	31081939	31081940	rs3130976	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	PSORS1C1	rs3130976-C	NR	3E-8		0.0190506	[0.012-0.026] unit decrease	Affymetrix [127266] (imputed)	N
822	chr6	31081939	31081940	rs3130976	32814899	Meyer HV	2020-08-19	Nature	Genetic and functional insights into the fractal structure of the heart.	Myocardial fractal dimension (slice 8)	18,096 European individuals		6p21.33	NR	rs3130976-C	0.28549	3E-8		0.064606	[0.042-0.087] unit increase	Affymetrix [14134301] (imputed)	N
822	chr6	31081939	31081940	rs3130976	32814899	Meyer HV	2020-08-19	Nature	Genetic and functional insights into the fractal structure of the heart.	Myocardial fractal dimension (slice 7)	18,096 European individuals		6p21.33	NR	rs3130976-C	0.28549	4E-7		0.059143	[0.036-0.082] unit increase	Affymetrix [14134301] (imputed)	N
822	chr6	31081939	31081940	rs3130976	32814899	Meyer HV	2020-08-19	Nature	Genetic and functional insights into the fractal structure of the heart.	Myocardial fractal dimension (slice 6)	18,096 European individuals		6p21.33	NR	rs3130976-C	0.28549	4E-8		0.064023	[0.041-0.087] unit increase	Affymetrix [14134301] (imputed)	N
822	chr6	31081939	31081940	rs3130976	32814899	Meyer HV	2020-08-19	Nature	Genetic and functional insights into the fractal structure of the heart.	Myocardial fractal dimension (slice 5)	18,096 European individuals		6p21.33	NR	rs3130976-C	0.28549	1E-8		0.066545	[0.044-0.089] unit increase	Affymetrix [14134301] (imputed)	N
822	chr6	31081939	31081940	rs3130976	32814899	Meyer HV	2020-08-19	Nature	Genetic and functional insights into the fractal structure of the heart.	Myocardial fractal dimension (slice 4)	18,096 European individuals		6p21.33	NR	rs3130976-C	0.28549	2E-6		0.055881	[0.033-0.079] unit increase	Affymetrix [14134301] (imputed)	N
822	chr6	31081939	31081940	rs3130976	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	6p21.33	C6orf15, PSORS1C1	rs3130976-T	NR	5E-8		0.124739	[0.08-0.169] unit increase	Illumina [at least 950000] (imputed)	N
822	chr6	31082196	31082197	rs3130979	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	6p21.33		rs3130979-G	0.655198	1E-8		0.0238702	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
822	chr6	31082403	31082404	rs3130980	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PSORS1C1	rs3130980-T	NR	1E-8		0.0171125	[0.011-0.023] unit decrease	Affymetrix [321016] (imputed)	N
822	chr6	31082403	31082404	rs3130980	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	PSORS1C1	rs3130980-T	NR	2E-9		0.01962	[0.013-0.026] unit decrease	Affymetrix [323123] (imputed)	N
822	chr6	31083285	31083286	rs3094219	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PSORS1C1, CDSN	rs3094219-A	NR	1E-8		0.0159832	[0.01-0.022] unit decrease	Affymetrix [321016] (imputed)	N
822	chr6	31084942	31084945	rs34182778	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p21.33	CDSN	rs34182778-G		5E-44		0.035	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
822	chr6	31085381	31085382	rs3094214	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	PSORS1C1, CDSN	rs3094214-A	NR	8E-11		0.0199471	[0.014-0.026] unit decrease	Affymetrix [323123] (imputed)	N
822	chr6	31085769	31085770	rs3094212	20139978	Kamatani Y	2010-02-07	Nat Genet	Genome-wide association study of hematological and biochemical traits in a Japanese population.	White blood cell count	14,677 Japanese ancestry individuals	NA	6p21.33	PSORS1C1, CDSN	rs3094212-C	0.35	7E-9		0.07	[0.046-0.094] unit increase	Illumina [561583]	N
822	chr6	31085823	31085824	rs3819686	29534301	Nishida N	2018-03-13	Hepatology	Key HLA-DRB1-DQB1 haplotypes and role of the BTNL2 gene for response to a hepatitis B vaccine.	Response to hepatitis B vaccine	107 Japanese ancestry low responder individuals, 351 Japanese ancestry intermediate responder individuals, 735 Japanese ancestry high responder individuals	NA	6p21.33	PSORS1C1	rs3819686-?		7E-6		0.15	unit decrease	Affymetrix [427664]	N
822	chr6	31086423	31086424	rs78479381	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.33		rs78479381-T	0.109186	3E-20		1.0718842	[1.05-1.09]	Affymetrix, Illumina [9851866] (imputed)	N
822	chr6	31087353	31087354	rs3130991	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	C6orf15, PSORS1C1, CDSN	rs3130991-T	0.3442211	4E-15	(EA, MHC class I polypeptide-related sequence B)	0.3612	[0.27-0.45] unit increase	Affymetrix [509946]	N
822	chr6	31088144	31088145	rs3095318	27611488	Almoguera B	2016-09-09	Am J Respir Crit Care Med	Identification of Four Novel Loci in Asthma in European American and African American Populations.	Adult asthma	337 African American allergic asthma cases, 321 African American non-allergic asthma cases, 1,367 African American controls, 466 European American allergic asthma cases, 626 European American non-allergic asthma cases, 7,878 European American controls	NA	6p21.33	PSORS1C1	rs3095318-?	NR	7E-8	(EA)			Affymetrix, Illumina [NR] (imputed)	N
822	chr6	31088144	31088145	rs3095318	27611488	Almoguera B	2016-09-09	Am J Respir Crit Care Med	Identification of Four Novel Loci in Asthma in European American and African American Populations.	Adult asthma	337 African American allergic asthma cases, 321 African American non-allergic asthma cases, 1,367 African American controls, 466 European American allergic asthma cases, 626 European American non-allergic asthma cases, 7,878 European American controls	NA	6p21.33	PSORS1C1	rs3095318-?	NR	2E-11		0.351	[0.25-0.45] unit increase	Affymetrix, Illumina [NR] (imputed)	N
822	chr6	31088231	31088232	rs2302398	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	152,447 East Asian ancestry individuals	NA	6p21.33		rs2302398-G	0.773065	4E-13		0.026479	[0.019-0.034] unit decrease	Illumina [13478948] (imputed)	N
822	chr6	31088231	31088232	rs2302398	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	153,015 East Asian ancestry individuals	NA	6p21.33		rs2302398-G	0.773485	9E-11		0.0240481	[0.017-0.031] unit decrease	Illumina [13478961] (imputed)	N
822	chr6	31088980	31088981	rs6927322	26503584	Litchfield K	2015-10-27	Nat Commun	Identification of four new susceptibility loci for testicular germ cell tumour.	Testicular germ cell tumor	986 European ancestry cases, 4,946 European ancestry controls	4,009 cases, 4,066 controls	6p21.33	NR	rs6927322-T	0.04	6E-6		1.24	[1.08-1.43]	Illumina [~ 8900000] (imputed)	N
822	chr6	31089707	31089708	rs4410768	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p21.33	CDSN, PSORS1C1	rs4410768-G	0.03	2E-10	(Turkish)	3.52	[2.34-5.30]	Illumina [up to 547389]	N
822	chr6	31091966	31091967	rs9263688	26151496	Chen PL	2015-07-07	Nat Commun	Genetic determinants of antithyroid drug-induced agranulocytosis by human leukocyte antigen genotyping and genome-wide association study.	Thionamide-induced agranulocytosis in Graves' disease	21 East Asian ancestry cases with agranulocytosis, 662 East Asian ancestry cases without agranulocytosis	21 East Asian ancestry cases with agranulocytosis, 546 East Asian ancestry cases without agranulocytosis	6p21.33	HLA	rs9263688-G	0.053	5E-21	(trend)	8.06	[4.86-13.37] (allelic)	Affymetrix [522980]	N
822	chr6	31091991	31091992	rs3094204	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PSORS1C1	rs3094204-A	NR	2E-9		0.0169554	[0.011-0.022] unit decrease	Affymetrix [319769] (imputed)	N
822	chr6	31091991	31091992	rs3094204	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	PSORS1C1	rs3094204-A	NR	6E-9		0.0163675	[0.011-0.022] unit decrease	Affymetrix [319769] (imputed)	N
822	chr6	31091991	31091992	rs3094204	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	PSORS1C1	rs3094204-A	NR	3E-8		0.0157756	[0.01-0.021] unit decrease	Affymetrix [321169] (imputed)	N
822	chr6	31092048	31092049	rs3095307	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	PSORS1C1	rs3095307-C	NR	3E-9		0.0181221	[0.012-0.024] unit decrease	Affymetrix [323123] (imputed)	N
822	chr6	31092766	31092767	rs3095304	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PSORS1C1	rs3095304-T	NR	8E-9		0.0205624	[0.014-0.028] unit decrease	Affymetrix [319769] (imputed)	N
822	chr6	31093092	31093093	rs9263692	32492067	Ruffieux H	2020-06-03	PLoS Comput Biol	A fully joint Bayesian quantitative trait locus mapping of human protein abundance in plasma.	Protein quantitative trait loci	394 European ancestry individuals	548 European ancestry individuals	6p21.33	NR	rs9263692-?	NR	5E-7	(MICA)			Illumina [~ 4000000] (imputed)	N
822	chr6	31093586	31093587	rs3815087	21801394	Genin E	2011-07-29	Orphanet J Rare Dis	Genome-wide association study of Stevens-Johnson Syndrome and Toxic Epidermal Necrolysis in Europe.	Drug-induced Stevens-Johnson syndrome or toxic epidermal necrolysis (SJS/TEN)	424 European ancestry cases, 1,881 European ancestry controls	NA	6p21.33	PSORS1C1	rs3815087-A	0.21	3E-7		1.53	[1.29-1.80]	Illumina [268914]	N
822	chr6	31093586	31093587	rs3815087	20041166	Fellay J	2009-12-24	PLoS Genet	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	6p21.33	CDSN	rs3815087-?	NR	8E-8	(progression)			Illumina [NR]	N
822	chr6	31093946	31093947	rs3094196	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	PSORS1C1	rs3094196-G	NR	9E-10		0.0228214	[0.016-0.03] unit decrease	Affymetrix [323123] (imputed)	N
822	chr6	31094198	31094199	rs13209303	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6p21.33	PSORS1C2	rs13209303-?	NR	7E-6	(TAG 52:6)	0.4081859	[0.23-0.59] unit increase	Affymetrix [at least 2500000] (imputed)	N
822	chr6	31095002	31095003	rs6931921	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Strep throat	52,487 European ancestry cases, 22,017 European ancestry controls	NA	6p21.33	NR	rs6931921-?	NR	5E-7		0.045	[0.027-0.063] unit decrease	Illumina [at least 560000] (imputed)	N
822	chr6	31095293	31095294	rs3131004	34075027	Gonda X	2021-06-01	Transl Psychiatry	Genetic underpinnings of affective temperaments: a pilot GWAS investigation identifies a new genome-wide significant SNP for anxious temperament in ADGRB3 gene.	Hyperthymic temperament	775 European ancestry individuals	NA	6p21.33		rs3131004-G	NR	9E-7		0.04087	unit decrease	Illumina [2550710] (imputed)	N
822	chr6	31095800	31095801	rs9263715	32771030	Tangtanatakul P	2020-08-08	Arthritis Res Ther	Meta-analysis of genome-wide association study identifies FBN2 as a novel locus associated with systemic lupus erythematosus in Thai population.	Systemic lupus erythematosus	487 Thai cases, 1,606 Thai controls	405 Thai cases, 1,590 Thai controls	6p21.33	PSORS1C1	rs9263715-A	0.32	2E-9		1.4329	[NR]	Illumina [421909] (imputed)	N
822	chr6	31097024	31097025	rs74375290	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Epithelial ovarian cancer	1,112 White British ancestry cases, 147,944 White British ancestry controls	NA	6p21.33		rs74375290-?	NR	6E-6		2.32386	[1.96-2.69]	NR [666300]	N
822	chr6	31097300	31097301	rs3130559	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PSORS1C1	rs3130559-T	NR	2E-8		0.0192616	[0.013-0.026] unit increase	Affymetrix [319769] (imputed)	N
822	chr6	31097300	31097301	rs3130559	23144326	Kim DK	2012-11-09	Am J Respir Crit Care Med	Genome-wide association analysis of blood biomarkers in chronic obstructive pulmonary disease.	Chronic obstructive pulmonary disease-related biomarkers	Up to 1,951 European ancestry smokers	NA	6p21.33	PSORS1C1	rs3130559-T	0.2	8E-9	(SP-D)			Illumina [588352]	N
822	chr6	31097813	31097814	rs6906565	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	6p21.33	NR	rs6906565-T	0.0994448200117359	2E-12		0.01719559	[0.012-0.022] unit increase	NR [NR]	N
822	chr6	31097813	31097814	rs6906565	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	6p21.33	NR	rs6906565-T	0.0994448200117359	2E-12		0.011002761	[0.0079-0.0141] unit increase	NR [NR]	N
822	chr6	31098133	31098134	rs3131006	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mononucleosis	17,457 European ancestry cases, 68,446 European ancestry controls	NA	6p21.33	NR	rs3131006-?	NR	3E-6		0.0727	[0.042-0.103] unit decrease	Illumina [at least 560000] (imputed)	N
822	chr6	31098733	31098734	rs3132541	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental longevity (mother's age at death)	52,776 middle-aged British individuals	NA	6p21.33	NR	rs3132541-?	NR	5E-6		0.032324	[0.018-0.046] unit increase	Affymetrix [9658292] (imputed)	N
822	chr6	31099238	31099239	rs143933372	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Creatinine levels	142,097 Japanese ancestry individuals	NA	6p21.33	PSORS1C1	rs143933372-?	NR	2E-8		0.03607	[0.024-0.049] unit decrease novel	Illumina [6108953] (imputed)	N
822	chr6	31099576	31099577	rs4959053	23001997	Hou S	2012-12-06	Arthritis Rheum	Identification of a susceptibility locus in STAT4 for Behcet's disease in Han Chinese in a genome-wide association study.	Behcet's disease	147 Han Chinese ancestry cases, 951 Han Chinese ancestry controls	554 Han Chinese ancestry cases, 1,159 Han Chinese ancestry controls	6p21.33	PSORS1C1	rs4959053-?	.11	2E-20		4.38	[3.20-5.99]	Affymetrix [661736]	N
822	chr6	31100625	31100625	rs548139121	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	PSORS1C1	rs548139121-TAA	NR	4E-8		0.0196747	[0.013-0.027] unit increase	Affymetrix [323123] (imputed)	N
822	chr6	31100941	31100942	rs3823418	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals, at least 88,461 European ancestry individuals	NA	6p21.33	PSORS1C1	rs3823418-A	0.1032	2E-7	(Japanese)	0.0338	[0.021-0.047] unit decrease	Illumina [1986983] (imputed)	N
822	chr6	31100941	31100942	rs3823418	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	6p21.33	PSORS1C1	rs3823418-A	0.15	2E-7		0.026	[0.0084-0.0436] unit increase	Affymetrix, Illumina [2704730] (imputed)	N
822	chr6	31101425	31101426	rs3132569	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PSORS1C1	rs3132569-A	NR	2E-10		0.022581	[0.016-0.03] unit decrease	Affymetrix [321016] (imputed)	N
822	chr6	31101582	31101583	rs4294047	33841421	Li J	2021-03-25	Front Immunol	Variants at the MHC Region Associate With Susceptibility to <i>Clostridioides difficile</i> Infection: A Genome-Wide Association Study Using Comprehensive Electronic Health Records.	Clostridioides difficle infection in antibiotics-users	587 European ancestry cases, 3,166 European ancestry controls	NA	6p21.33	PSORS1C2	rs4294047-A	0.103	8E-6		1.53	[1.28-1.8]	Illumina [64973696] (imputed)	N
822	chr6	31101673	31101674	rs3130564	25827949	Kunz M	2015-05-04	Exp Dermatol	Genome-wide association study identifies new susceptibility loci for cutaneous lupus erythematosus.	Cutaneous lupus erythematosus	151 European ancestry cases, 1,288 European ancestry controls	219 European ancestry cases, 262 European ancestry controls	6p21.33	PSORS1C1	rs3130564-T	0.163	4E-10		2.05	[1.56-2.70]	Affymetrix [906600]	N
822	chr6	31101673	31101674	rs3130564	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.33	PSORS1C1	rs3130564-T	0.1934	1E-42		2.62	[NR]	Illumina [242824]	N
822	chr6	31102272	31102273	rs75881311	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.33	NR	rs75881311-A	0.082	3E-13	(conditional)	1.279	[1.21-1.35]	Illumina [11270530] (imputed)	N
822	chr6	31102304	31102305	rs61444472	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	683 Turkish ancestry cases, 1,721 Turkish ancestry controls	NA	6p21.33	PSORSIC1	rs61444472-?	NR	2E-17	(conditional on rs2844678 and rs9262437)			Illumina [4495750] (imputed)	N
822	chr6	31102963	31102964	rs3132565	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	6p21.33	NR	rs3132565-A	NR	1E-9		1.07	[NR]	Illumina [7158791] (imputed)	N
822	chr6	31103194	31103195	rs3094669	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	6p21.33	NR	rs3094669-G	0.135689518720733	6E-9		0.015982522	[0.011-0.021] unit decrease	NR [NR]	N
822	chr6	31103588	31103589	rs13198298	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	6p21.33	NR	rs13198298-T	0.101343027086662	2E-12		0.010678657	[0.0077-0.0137] unit increase	NR [NR]	N
822	chr6	31103588	31103589	rs13198298	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	6p21.33	NR	rs13198298-T	0.101343027086662	3E-12		0.01306148	[0.0094-0.0167] unit increase	NR [NR]	N
822	chr6	31103588	31103589	rs13198298	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	6p21.33	NR	rs13198298-T	0.101343027086662	6E-12		0.013910175	[0.0099-0.0179] unit increase	NR [NR]	N
822	chr6	31104060	31104061	rs1265101	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PSORS1C1	rs1265101-A	NR	5E-12		0.058179	[0.042-0.075] unit decrease	Affymetrix [321016] (imputed)	N
822	chr6	31104592	31104593	rs28732100	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Subjective well-being (MTAG)	388,538 European ancestry individuals	NA	6p21.33	NR	rs28732100-C	0.9494	2E-8		0.0245	[0.016-0.033] unit increase	Illumina [NR] (imputed)	N
822	chr6	31104592	31104593	rs28732100	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Neuroticism (MTAG)	168,105 European ancestry individuals	NA	6p21.33	NR	rs28732100-C	0.9458	2E-8		0.037	[0.024-0.05] unit decrease	Illumina [NR] (imputed)	N
822	chr6	31104592	31104593	rs28732100	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms (MTAG)	354,862 European ancestry individuals	NA	6p21.33	NR	rs28732100-C	0.9481	2E-9		0.0293	[0.02-0.039] unit decrease	Illumina [NR] (imputed)	N
822	chr6	31104854	31104855	rs3094665	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	PSORS1C1	rs3094665-C	NR	1E-8		0.020395	[0.013-0.027] unit decrease	Affymetrix [323123] (imputed)	N
822	chr6	31105264	31105265	rs3132559	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PSORS1C1	rs3132559-G	NR	2E-8		0.0159183	[0.01-0.021] unit decrease	Affymetrix [321016] (imputed)	N
822	chr6	31105264	31105265	rs3132559	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	PSORS1C1	rs3132559-G	NR	2E-9		0.0185127	[0.012-0.025] unit decrease	Affymetrix [323123] (imputed)	N
822	chr6	31105309	31105310	rs1265100	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6p21.33		rs1265100-?	NR	8E-13		0.894617	[0.86-0.93]	NR [685523]	N
822	chr6	31105412	31105413	rs1265099	30626913	Amare AT	2019-01-09	Mol Psychiatry	Bivariate genome-wide association analyses of the broad depression phenotype combined with major depressive disorder, bipolar disorder or schizophrenia reveal eight novel genetic loci for depression.	Broad depression or schizophrenia	9,240 European ancestry broad depression cases, 9,519 European ancestry broad depression controls, 51,258 European ancestry individuals, 36,989 European and East Asian ancestry schizophrenia cases, 113,075 European and East Asian ancestry schizophrenia controls	322,580 individuals	6p21.33	PSORS1C2	rs1265099-A	0.41	2E-10				Affymetrix, Illumina [at least 918921] (imputed)	N
822	chr6	31105632	31105633	rs2074478	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.33		rs2074478-T	0.809793	4E-16		1.0453895	[1.03-1.05]	Affymetrix, Illumina [9851866] (imputed)	N
822	chr6	31106267	31106268	rs3130573	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	PSORS1C1, PSORS1C2	rs3130573-G	NR	1E-9		0.0200379	[0.014-0.026] unit decrease	Affymetrix [323858] (imputed)	N
822	chr6	31106267	31106268	rs3130573	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	PSORS1C1, PSORS1C2	rs3130573-G	NR	3E-9		0.0196118	[0.013-0.026] unit decrease	Affymetrix [127266] (imputed)	N
822	chr6	31106267	31106268	rs3130573	21750679	Allanore Y	2011-07-07	PLoS Genet	Genome-wide scan identifies TNIP1, PSORS1C1, and RHOB as novel risk loci for systemic sclerosis.	Systemic sclerosis	564 European ancestry cases, 1,776 European ancestry controls	1,682 European ancestry cases, 3,926 European ancestry controls	6p21.33	PSORS1C1	rs3130573-G	0.32	6E-10		1.25	[1.17-1.35]	Illumina [489814]	N
822	chr6	31106458	31106459	rs1265097	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PSORS1C1, PSORS1C2	rs1265097-A	NR	3E-9		0.0309409	[0.021-0.041] unit increase	Affymetrix [319769] (imputed)	N
822	chr6	31106458	31106459	rs1265097	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	PSORS1C1, PSORS1C2	rs1265097-A	NR	4E-8		0.0285098	[0.018-0.039] unit increase	Affymetrix [319769] (imputed)	N
822	chr6	31106458	31106459	rs1265097	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PSORS1C1, PSORS1C2	rs1265097-A	NR	3E-15		0.0410297	[0.031-0.051] unit decrease	Affymetrix [321016] (imputed)	N
822	chr6	31106458	31106459	rs1265097	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	PSORS1C1, PSORS1C2	rs1265097-A	NR	7E-10		0.0349645	[0.024-0.046] unit decrease	Affymetrix [323123] (imputed)	N
822	chr6	31106458	31106459	rs1265097	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	6p21.33	PSORS1C1	rs1265097-C	0.917203	7E-18		0.0323248	[0.025-0.04] unit decrease	Affymetrix [NR] (imputed)	N
822	chr6	31106458	31106459	rs1265097	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	6p21.33	NR	rs1265097-?	NR	8E-7		0.04125219	[0.025-0.058] unit decrease	Illumina [34656550] (imputed)	N
822	chr6	31106458	31106459	rs1265097	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.33	PSORS1C2, PSORS1C1	rs1265097-A	0.1234	1E-10		0.072	[0.05-0.094] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
822	chr6	31106458	31106459	rs1265097	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	6p21.33	PSORS1C1, PSORS1C2	rs1265097-A	0.115	2E-32		0.059	[0.049-0.069] unit decrease	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
822	chr6	31106488	31106489	rs1265096	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	6p21.33	NR	rs1265096-?		7E-9	(SFTPD)	0.3365	[NR] unit increase	Illumina [NR]	N
822	chr6	31106605	31106606	rs16898823	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals	at least 101,293 European ancestry individuals	6p21.33	PSORS1C1, PSORS1C2	rs16898823-A	0.9	3E-8	(Japanese)	0.037	[0.023-0.051] unit increase	Illumina [5864938] (imputed)	N
822	chr6	31107186	31107187	rs1265093	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PSORS1C1	rs1265093-A	NR	2E-11		0.0205689	[0.015-0.027] unit increase	Affymetrix [319769] (imputed)	N
822	chr6	31107186	31107187	rs1265093	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	PSORS1C1	rs1265093-A	NR	1E-10		0.0198483	[0.014-0.026] unit increase	Affymetrix [319769] (imputed)	N
822	chr6	31107186	31107187	rs1265093	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	PSORS1C1	rs1265093-A	NR	2E-11		0.0223747	[0.016-0.029] unit decrease	Affymetrix [323123] (imputed)	N
822	chr6	31107186	31107187	rs1265093	23144326	Kim DK	2012-11-09	Am J Respir Crit Care Med	Genome-wide association analysis of blood biomarkers in chronic obstructive pulmonary disease.	Chronic obstructive pulmonary disease-related biomarkers	Up to 1,951 European ancestry smokers	NA	6p21.33	PSORS1C1, CCHCR1	rs1265093-A	0.26	6E-9	(SP-D)			Illumina [588352]	N
822	chr6	31107257	31107258	rs2285803	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PSORS1C1	rs2285803-T	NR	3E-8		0.0173578	[0.011-0.023] unit decrease	Affymetrix [319769] (imputed)	N
822	chr6	31107257	31107258	rs2285803	33875642	Duran-Lozano L	2021-04-19	Blood Cancer J	Germline variants at SOHLH2 influence multiple myeloma risk.	Multiple myeloma	4,376 European ancestry cases, 345,887 European ancestry controls	5,598 European ancestry cases, 15,261 European ancestry controls	6p21.33	PSORS1C2	rs2285803-T	0.26	1E-11		1.17	[NR]	Illumina [33000000] (imputed)	N
822	chr6	31107257	31107258	rs2285803	23955597	Chubb D	2013-08-18	Nat Genet	Common variation at 3q26.2, 6p21.33, 17p11.2 and 22q13.1 influences multiple myeloma risk.	Multiple myeloma	2,335 European ancestry cases, 7,306 European ancestry controls	2,357 European ancestry cases, 3,684 European ancestry controls	6p21.33	PSORS1C1, CCHCR1, TCF19, POU5F1, CDSN	rs2285803-A	0.32	1E-10		1.192	[1.13-1.26]	Illumina [414804]	N
822	chr6	31108128	31108129	rs1265091	32769997	Zhou W	2020-08-07	Nat Commun	GWAS of thyroid stimulating hormone highlights pleiotropic effects and inverse association with thyroid cancer.	Thyroid stimulating hormone levels	119,715 European ancestry individuals	NA	6p21.33	PSORS1C1	rs1265091-T	0.187386210350798	5E-15		0.0553	[0.041-0.069] SD increase	Illumina [22400000] (imputed)	N
822	chr6	31108128	31108129	rs1265091	30367059	Teumer A	2018-10-26	Nat Commun	Genome-wide analyses identify a role for SLC17A4 and AADAT in thyroid hormone regulation.	Thyroid stimulating hormone levels	54,288 European ancestry individuals	up to 22,383 European ancestry individuals	6p21.33	PSORS1C1	rs1265091-T	0.2	5E-15		0.058	[0.044-0.072] unit increase	Affymetrix, Illumina [8048941] (imputed)	N
822	chr6	31109544	31109545	rs9263737	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Lymphocyte counts	62,076 Japanese ancestry individuals	NA	6p21.33	NR	rs9263737-?	NR	4E-8		0.03399	[0.022-0.046] unit decrease novel	Illumina [6108953] (imputed)	N
822	chr6	31109881	31109882	rs1265086	33143745	Andlauer TFM	2020-11-04	BMC Med	Treatment- and population-specific genetic risk factors for anti-drug antibodies against interferon-beta: a GWAS.	Binding antibody response to interferon beta therapy in multiple sclerosis (antibody levels; all treatment preparations)	up to 2,000 German and Swedish ancestry individuals	up to 757 German and Swedish ancestry individuals	6p21.33		rs1265086-T	0.38	5E-9	(conditional on rs9272071 + rs28746882)	0.15234222	[-0.1--0.2] unit decrease	Illumina [8550834] (imputed)	N
822	chr6	31110390	31110391	rs1576	30921485	Bejaoui Y	2019-03-28	Exp Dermatol	Genome-wide association study of psoriasis in an Egyptian population.	Psoriasis	215 Egyptian ancestry cases, 416 Egyptian ancestry controls	321 Egyptian ancestry cases, 253 Egyptian ancestry controls	6p21.33	CCHCR1	rs1576-?	NR	2E-7		1.67	[1.41-1.99]	Illumina [312245]	N
822	chr6	31111355	31111356	rs9263739	19915573	Asano K	2009-11-15	Nat Genet	A genome-wide association study identifies three new susceptibility loci for ulcerative colitis in the Japanese population.	Ulcerative colitis	376 Japanese ancestry cases, 934 Japanese ancestry controls	376 Japanese ancestry cases, 1,097 Japanese ancestry controls	6p21.33	HLA	rs9263739-T	0.15	4E-67		2.73	[2.43-3.07]	Illumina [513923]	N
822	chr6	31111674	31111675	rs1265081	32276964	Shete S	2020-04-10	Cancer Res	A genome-wide association study identifies two novel susceptible regions for squamous cell carcinoma of the head and neck.	Head and neck squamous cell carcinoma	2,171 European ancestry cases, 4,493 European ancestry controls	5,205 European ancestry cases, 3,232 European ancestry controls	6p21.33	CCHCR1	rs1265081-A	0.52	4E-10		1.1764705	[1.11-1.23]	Illumina [7858089] (imputed)	N
822	chr6	31112074	31112075	rs1265080	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Non-Hodgkin's lymphoma	2,400 European ancestry cases, 410,350 European ancestry controls	NA	6p21.33		rs1265080-A	NR	2E-8		1.1785504	NR	Affymetrix [7846216] (imputed)	N
822	chr6	31113112	31113113	rs1265075	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6p21.33	CCHCR1	rs1265075-A	0.076201	5E-17		0.037481945	[0.029-0.046] unit increase	Affymetrix [93095623] (imputed)	N
822	chr6	31113112	31113113	rs1265075	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	6p21.33	CCHCR1	rs1265075-A	0.076277	4E-25		0.04465471	[0.036-0.053] unit decrease	Affymetrix [93095623] (imputed)	N
822	chr6	31113112	31113113	rs1265075	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6p21.33	CCHCR1	rs1265075-A	0.076136	8E-24		0.044859033	[0.036-0.054] unit decrease	Affymetrix [93095623] (imputed)	N
822	chr6	31113112	31113113	rs1265075	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	6p21.33	CCHCR1	rs1265075-A	0.07622	8E-10		0.026229646	[0.018-0.035] unit increase	Affymetrix [93095623] (imputed)	N
822	chr6	31113274	31113275	rs886401	33143745	Andlauer TFM	2020-11-04	BMC Med	Treatment- and population-specific genetic risk factors for anti-drug antibodies against interferon-beta: a GWAS.	Binding antibody response to interferon beta therapy in multiple sclerosis (antibody levels; IFN?-1a subcutaneous and intramuscular)	up to 2,000 German and Swedish ancestry individuals	up to 757 German and Swedish ancestry individuals	6p21.33		rs886401-A	NR	4E-12		0.24661802	[0.18-0.32] unit increase	Illumina [8550834] (imputed)	N
822	chr6	31114899	31114900	rs2240060	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals, 6,795 African American individuals, 6,324 East Asian ancestry individuals, 2,335 South Asian ancestry individuals, 1,442 Hispanic individuals	NA	6p21.33	CCHCR1	rs2240060-A	NR	3E-10		0.0137	[0.0094-0.018] unit increase	Affymetrix, Illumina [8034757] (imputed)	N
822	chr6	31114899	31114900	rs2240060	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals	NA	6p21.33	CCHCR1	rs2240060-A	0.2881	6E-10		0.0136336	[0.0093-0.018] unit increase	Affymetrix, Illumina [8603712] (imputed)	N
822	chr6	31114899	31114900	rs2240060	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Microalbuminuria	51,861 European, African American, East Asian, South Asian or Hispanic ancestry cases, 297,093 European, African American, East Asian, South Asian or Hispanic ancestry controls	NA	6p21.33	CCHCR1	rs2240060-A	NR	4E-7		1.0380044	[1.02-1.05]	Affymetrix, Illumina [8326000] (imputed)	N
822	chr6	31116209	31116210	rs130071	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.33		rs130071-A	NR	3E-11		1.1198208	[1.08-1.16]	Affymetrix [7846216] (imputed)	N
822	chr6	31116209	31116210	rs130071	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6p21.33	NR	rs130071-G	0.7038	3E-16		1.0548522	[1.04-1.07]	Affymetrix [15688218] (imputed)	N
822	chr6	31116525	31116526	rs3132535	27363682	Mitchell JS	2016-07-01	Nat Commun	Genome-wide association study identifies multiple susceptibility loci for multiple myeloma.	Multiple myeloma	7,319 European ancestry cases, 234,385 European ancestry controls	2,547 European ancestry cases, 4,803 European ancestry controls	6p21.33	NR	rs3132535-A		3E-17		1.2	[1.15-1.25]	Illumina [at least 7182761] (imputed)	N
822	chr6	31116626	31116627	rs3131014	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	CCHCR1	rs3131014-A	NR	1E-8		0.0188268	[0.012-0.025] unit increase	Affymetrix [319769] (imputed)	N
822	chr6	31116626	31116627	rs3131014	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	CCHCR1	rs3131014-A	NR	2E-11		0.0223184	[0.016-0.029] unit decrease	Affymetrix [321016] (imputed)	N
822	chr6	31116626	31116627	rs3131014	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	CCHCR1	rs3131014-A	NR	7E-15		0.0280938	[0.021-0.035] unit decrease	Affymetrix [323123] (imputed)	N
822	chr6	31116738	31116739	rs9263761	33239696	Steinthorsdottir V	2020-11-25	Nat Commun	Genetic predisposition to hypertension is associated with preeclampsia in European and Central Asian women.	Preeclampsia (maternal genotype effect)	2,296 Central Asian ancestry cases, 2,059 Central Asian ancestry controls, 7,219 European ancestry cases, 155,660 European ancestry controls	592 Kazakh ancestry cases, 361 Kazakh ancestry controls, 2,043 European ancestry cases, 6,018 European ancestry controls	6p21.33		rs9263761-G	0.76	2E-6		1.11	[1.06-1.16]	Illumina [11796347] (imputed)	N
822	chr6	31117074	31117075	rs1265115	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	CCHCR1	rs1265115-A	NR	6E-9		0.0193434	[0.013-0.026] unit decrease	Affymetrix [323123] (imputed)	N
822	chr6	31118018	31118019	rs1265112	21810746	Chantarangsu S	2011-08-01	Clin Infect Dis	Genome-wide association study identifies variations in 6p21.3 associated with nevirapine-induced rash.	Nevirapine-induced rash	72 Thai ancestry nevirapine-induced rash HIV cases, 77 Thai ancestry nevirapine-tolerant rash HIV cases	88 Thai ancestry nevirapine-induced rash HIV cases, 145 Thai ancestry nevirapine-tolerant HIV cases		CCHCR1	rs1265112-G	0.06	1E-8		4.36	[2.58-7.36]	Illumina [499730]	N
822	chr6	31118510	31118511	rs130067	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	6p21.33	NR	rs130067-G	0.2	2E-7		1.05	[1.03-1.07]	Illumina [20370935] (imputed)	N
822	chr6	31118510	31118511	rs130067	21743467	Kote-Jarai Z	2011-07-10	Nat Genet	Seven prostate cancer susceptibility loci identified by a multi-stage genome-wide association study.	Prostate cancer	6,621 European ancestry cases, 6,939 European ancestry controls	22,957 European ancestry cases, 23,234 European ancestry controls, 420 East Asian ancestry cases, 433 East Asian ancestry controls, 112 African American cases, 298 African American controls, 7,140 cases, 5,455 controls	6p21.33	CCHCR1	rs130067-G	0.21	3E-8		1.05	[1.02-1.09]	NR [2600000] (imputed)	N
822	chr6	31119868	31119869	rs1265108	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	CCHCR1	rs1265108-T	NR	1E-8		0.0172707	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
822	chr6	31119868	31119869	rs1265108	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	CCHCR1	rs1265108-T	NR	1E-12		0.0213867	[0.015-0.027] unit decrease	Affymetrix [321016] (imputed)	N
822	chr6	31119868	31119869	rs1265108	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	CCHCR1	rs1265108-T	NR	8E-15		0.0255848	[0.019-0.032] unit decrease	Affymetrix [323123] (imputed)	N
822	chr6	31121425	31121426	rs143334143	33307546	Pairo-Castineira E	2020-12-11	Nature	Genetic mechanisms of critical illness in Covid-19.	COVID-19 (critical illness vs population)	2,804 European ancestry cases, 2,415 European, South Asian and Hispanic or Latin American ancestry cases, 687,911 European ancestry controls, 477,741 European, South Asian and Hispanic or Latin American ancestry controls	NA	6p21.33		rs143334143-A	NR	2E-10		1.3	[1.27-1.48]	Illumina [NR] (imputed)	N
822	chr6	31122499	31122500	rs130065	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8 on CD28+ CD45RA+ CD8+ T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs130065-A	0.16421	1E-14		0.3127	[0.23-0.39] unit decrease	Illumina [17954496] (imputed)	N
822	chr6	31128328	31128329	rs9263789	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	TCF19	rs9263789-A	NR	3E-9		0.0228494	[0.015-0.03] unit increase	Affymetrix [321169] (imputed)	N
822	chr6	31128551	31128552	rs3130934	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	6p21.33		rs3130934-A	0.315939	3E-10		0.028368	[0.02-0.037] unit increase	NR [11722792] (imputed)	N
822	chr6	31128551	31128552	rs3130934	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	6p21.33		rs3130934-A	0.315939	3E-9		0.0263765	[0.018-0.035] unit increase	NR [11722792] (imputed)	N
822	chr6	31129309	31129310	rs7750641	33909500	Moll M	2021-04-28	Am J Physiol Lung Cell Mol Physiol	A Systematic Analysis of Protein-altering Exonic Variants in Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease	up to 31,465 European ancestry cases, up to 203,688 European ancestry controls, up to 1,413 African ancestry cases, up to 6,080 African ancestry controls, up to 287 East Asian ancestry cases, up to 7,484 East Asian ancestry controls, up to 61 Hispanic cases, up to 613 Hispanic controls	NA	6p21.33	TCF19	rs7750641-T	0.15	1E-12		1.11	[1.08 -1.14]	Illumina [at least 109036]	N
822	chr6	31129309	31129310	rs7750641	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.33	TCF19	rs7750641-T	0.1263	3E-58		3.35	[NR]	Illumina [242824]	N
822	chr6	31129615	31129616	rs2073721	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes (adjusted for BMI)	up to 48,286 European ancestry cases, up to 250,671 European ancestry controls	NA	6p21.33	MHC	rs2073721-G	0.742	6E-10		1.04	[1.03-1.06]	Affymetrix, Illumina [247470]	N
822	chr6	31129615	31129616	rs2073721	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes (adjusted for BMI)	48,286 European ancestry cases, 250,671 European ancestry controls, 33,126 African American, East Asian, Hispanic/Latino or South Asian cases, 120,161 African American, East Asian, Hispanic/Latino or South Asian controls	NA	6p21.33	MHC	rs2073721-G	0.749	2E-9		1.04	[1.02-1.05]	Affymetrix, Illumina [247470]	N
822	chr6	31129615	31129616	rs2073721	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes	up to 48,286 European ancestry cases, up to 250,671 European ancestry controls	NA	6p21.33	MHC	rs2073721-G	0.742	6E-9		1.04	[1.02-1.06]	Affymetrix, Illumina [247470]	N
822	chr6	31129615	31129616	rs2073721	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes	48,286 European ancestry cases, 250,671 European ancestry controls, 33,126 African American, East Asian, Hispanic/Latino or South Asian cases, 120,161 African American, East Asian, Hispanic/Latino or South Asian controls	NA	6p21.33	MHC	rs2073721-G	0.749	2E-10		1.04	[1.02-1.05]	Affymetrix, Illumina [247470]	N
822	chr6	31130592	31130593	rs1419881	25802187	Jiang DK	2015-04-28	Hepatology	Genetic variants in five novel loci including CFB and CD40 predispose to chronic hepatitis B.	Chronic hepatitis B infection	2,514 Chinese ancestry cases, 1,130 Chinese ancestry controls	6,600 Chinese ancestry cases, 8,127 Chinese ancestry controls	6p21.33	TCF19	rs1419881-G	0.55	3E-7		1.12	[1.08-1.18]	Illumina [3680900] (imputed)	N
822	chr6	31130592	31130593	rs1419881	23760081	Kim YJ	2013-06-10	Hum Mol Genet	A genome-wide association study identified new variants associated with the risk of chronic hepatitis B.	Chronic hepatitis B infection	400 Korean ancestry cases, 1,000 Korean ancestry controls	971 Korean ancestry cases, 1,938 Korean ancestry controls	6p21.33	TCF19	rs1419881-?	NR	1E-18		1.37	[1.23-1.52]	Illumina [719265]	N
822	chr6	31131444	31131445	rs182661945	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	6p21.33	NR	rs182661945-?	NR	2E-9		5.977	NR z score increase	Illumina [at least 830937] (imputed)	N
822	chr6	31132084	31132085	rs3130933	33649182	Penova M	2021-03-01	Proc Natl Acad Sci U S A	Genome wide association study of HTLV-1-associated myelopathy/tropical spastic paraparesis in the Japanese population.	HTLV-1 associated myelopathy	731 Japanese ancestry cases, 846 Japanese ancestry controls	NA	6p21.33		rs3130933-T	0.04	5E-9		2.44	[1.81-3.29]	Illumina [126394]	N
822	chr6	31134887	31134888	rs3130931	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	6p21.33	NR	rs3130931-C	0.6765	2E-32		0.0482	[0.04-0.056] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
822	chr6	31134887	31134888	rs3130931	21801394	Genin E	2011-07-29	Orphanet J Rare Dis	Genome-wide association study of Stevens-Johnson Syndrome and Toxic Epidermal Necrolysis in Europe.	Drug-induced Stevens-Johnson syndrome or toxic epidermal necrolysis (SJS/TEN)	424 European ancestry cases, 1,881 European ancestry controls	NA	6p21.33	POU5F1	rs3130931-C	0.69	8E-7		1.54	[1.29-1.84]	Illumina [268914]	N
822	chr6	31135988	31135989	rs185402687	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	6p21.33	POU5F1	rs185402687-C	0.0157	6E-14		0.1102721	[0.081-0.139] unit decrease	Affymetrix [~ 2500000] (imputed)	N
822	chr6	31136452	31136453	rs3130501	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	6p21.33	POU5F1	rs3130501-G	0.7833	6E-9	(EA)	0.0693	[0.046-0.093] unit increase	Affymetrix, Illumina [NR] (imputed)	N
822	chr6	31136452	31136453	rs3130501	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	6p21.33	POU5F1	rs3130501-G	0.7833	4E-12		0.063	[0.045-0.081] unit increase	Affymetrix, Illumina [NR] (imputed)	N
822	chr6	31136452	31136453	rs3130501	21801394	Genin E	2011-07-29	Orphanet J Rare Dis	Genome-wide association study of Stevens-Johnson Syndrome and Toxic Epidermal Necrolysis in Europe.	Drug-induced Stevens-Johnson syndrome or toxic epidermal necrolysis (SJS/TEN)	424 European ancestry cases, 1,881 European ancestry controls	NA	6p21.33	POU5F1	rs3130501-G	0.74	2E-8		1.74	[1.43-2.13]	Illumina [268914]	N
822	chr6	31136713	31136714	rs3132524	24509480	Mahajan A	2014-02-09	Nat Genet	Genome-wide trans-ancestry meta-analysis provides insight into the genetic architecture of type 2 diabetes susceptibility.	Type 2 diabetes	12,171 European ancestry cases, 56,862 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls	21,491 European ancestry cases, 55,647 European ancestry controls	6p21.33	TCF19, POU5F1	rs3132524-G		4E-9		1.07	[1.04-1.09]	Affymetrix, Illumina [2500000] (imputed)	N
822	chr6	31138106	31138107	rs1062630	28654678	Mandage R	2017-06-27	PLoS One	Genetic factors affecting EBV copy number in lymphoblastoid cell lines derived from the 1000 Genome Project samples.	Epstein-Barr virus copy number in lymphoblastoid cell lines	389 East Asian ancestry individuals, 189 South Asian ancestry individuals, 492 European ancestry individuals, 467 Sub-Saharan African ancestry individuals, 59 African American individuals, 157 Hispanic/Latino individuals	NA	6p21.33	POU5F1	rs1062630-?	NR	1E-6				NR [at least 880000]	N
822	chr6	31139451	31139452	rs879882	31935283	Du Z	2020-01-01	Blood Adv	A meta-analysis of genome-wide association studies of multiple myeloma among men and women of African ancestry.	Multiple myeloma	1,813 African American and African ancestry cases, 8,871 African American and African ancestry controls	NA	6p21.33	NR	rs879882-T	0.45	1E-6		1.2	[1.12-1.29]	Illumina [12683648] (imputed)	N
822	chr6	31139451	31139452	rs879882	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	6p21.33	MICA	rs879882-?	NR	2E-7	(Conditioned on rs2256183)		[NR]	Affymetrix, Illumina [2834208] (imputed)	N
822	chr6	31140046	31140047	rs1265159	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.33	intergenic	rs1265159-T	0.2191	4E-37		2.42	[NR]	Illumina [242824]	N
822	chr6	31140151	31140152	rs885950	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	6p21.33	POU5F1, HCG27, HLA	rs885950-C	0.42	7E-13		1.08	[1.07-1.09]	Illumina [at least 560000] (imputed)	N
822	chr6	31140740	31140741	rs1265158	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	POU5F1	rs1265158-G	NR	1E-8		0.0185854	[0.012-0.025] unit decrease	Affymetrix [323858] (imputed)	N
822	chr6	31140740	31140741	rs1265158	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	POU5F1	rs1265158-G	NR	3E-8		0.0179118	[0.012-0.024] unit decrease	Affymetrix [127266] (imputed)	N
822	chr6	31140740	31140741	rs1265158	28087736	Ludwig KU	2017-01-13	Hum Mol Genet	Imputation of orofacial clefting data identifies novel risk loci and sheds light on the genetic background of cleft lip ? cleft palate and cleft palate only.	Nonsyndromic cleft lip with or without cleft palate	399 European ancestry cases, 1,318 European ancestry controls, 666 European ancestry trios, 795 Asian trios	224 European ancestry cases, 921 European ancestry controls, 152 Mayan cases, 323 Mayan controls, 198 Middle Eastern cases, 391 Middle Eastern controls	6p21.33	NR	rs1265158-?		5E-6	(EA)			NR [8012124] (imputed)	N
822	chr6	31140740	31140741	rs1265158	28087736	Ludwig KU	2017-01-13	Hum Mol Genet	Imputation of orofacial clefting data identifies novel risk loci and sheds light on the genetic background of cleft lip ? cleft palate and cleft palate only.	Nonsyndromic cleft lip with or without cleft palate	399 European ancestry cases, 1,318 European ancestry controls, 666 European ancestry trios, 795 Asian trios	224 European ancestry cases, 921 European ancestry controls, 152 Mayan cases, 323 Mayan controls, 198 Middle Eastern cases, 391 Middle Eastern controls	6p21.33	NR	rs1265158-?		3E-6	(All)			NR [8012124] (imputed)	N
822	chr6	31141208	31141209	rs2269712	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.33		rs2269712-A	0.249	1E-10				Affymetrix [10369434] (imputed)	N
822	chr6	31141208	31141209	rs2269712	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	POU5F1	rs2269712-A	NR	2E-8		0.0181335	[0.012-0.024] unit decrease	Affymetrix [319769] (imputed)	N
822	chr6	31141481	31141482	rs116763857	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p21.33	PSORS1C3	rs116763857-G	0.027	1E-14		0.295	[0.22-0.37] unit decrease	Affymetrix, Illumina [7374092] (imputed)	N
822	chr6	31142244	31142245	rs3094188	23266558	Yamazaki K	2012-12-21	Gastroenterology	A genome-wide association study identifies 2 susceptibility Loci for Crohn's disease in a Japanese population.	Crohn's disease	372 Japanese ancestry cases,3,389 Japanese ancestry controls	Up to 1,151 Japanese ancestry cases, up to 15,800 Japanese ancestry controls	6p21.33	PSORS1C3	rs3094188-C	0.280	7E-7		1.61	[1.33-1.94]	Illumina [4929034] (imputed)	N
822	chr6	31142244	31142245	rs3094188	21801394	Genin E	2011-07-29	Orphanet J Rare Dis	Genome-wide association study of Stevens-Johnson Syndrome and Toxic Epidermal Necrolysis in Europe.	Drug-induced Stevens-Johnson syndrome or toxic epidermal necrolysis (SJS/TEN)	424 European ancestry cases, 1,881 European ancestry controls	NA	6p21.33	POU5F1	rs3094188-A	0.63	3E-8		1.59	[1.34-1.88]	Illumina [268914]	N
822	chr6	31143510	31143511	rs887466	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation GrimAge acceleration	34,467 European ancestry individuals	NA	6p21.33	NR	rs887466-A	0.3815	5E-10		0.1928	[0.13-0.25] unit decrease	Affymetrix, Illumina [7568149] (imputed)	N
822	chr6	31143581	31143582	rs3131018	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.33		rs3131018-A	0.369	3E-21				Affymetrix [10369434] (imputed)	N
822	chr6	31143581	31143582	rs3131018	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p21.33		rs3131018-A	0.369	2E-16				Affymetrix [10369434] (imputed)	N
822	chr6	31143581	31143582	rs3131018	21051598	Pereyra F	2010-11-04	Science	The major genetic determinants of HIV-1 control affect HLA class I peptide presentation.	HIV-1 control	516 European cases, 1,196 European controls, 341 African American cases, 892 African American controls, 117 Hispanic cases, 560 Hispanic controls	NA	6p21.33	PSORS1C3	rs3131018-C	0.625	4E-16	(EA)	2.1	[NR]	Illumina [1384048] (imputed)	N
822	chr6	31144636	31144637	rs9404937	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	POU5F1, PSORS1C3	rs9404937-A	NR	7E-13		0.0235486	[0.017-0.03] unit decrease	Affymetrix [323123] (imputed)	N
822	chr6	31147475	31147476	rs3130507	29227965	Pilling LC	2017-12-01	Aging (Albany NY)	Human longevity: 25 genetic loci associated in 389,166 UK biobank participants.	Parental longevity (mother's attained age)	412,937 British ancestry individuals	NA	6p21.33	PSORS1C3	rs3130507-G	0.72	2E-10		0.0155	[0.011-0.02] unit decrease	Affymetrix [11535925] (imputed)	N
822	chr6	31147475	31147476	rs3130507	29227965	Pilling LC	2017-12-01	Aging (Albany NY)	Human longevity: 25 genetic loci associated in 389,166 UK biobank participants.	Parental longevity (combined parental attained age, Martingale residuals)	389,166 British ancestry individuals	NA	6p21.33	PSORS1C3	rs3130507-G	NR	4E-6			[NR]	Affymetrix [11535925] (imputed)	N
822	chr6	31154261	31154262	rs7753892	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GNLY	5,366 Icelandic ancestry individuals	NA	6p21.33		rs7753892-C	0.3652	5E-15		0.154032	[0.12-0.19] unit increase	Illumina [7506463] (imputed)	N
822	chr6	31154261	31154262	rs7753892	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GNLY	5,366 Icelandic ancestry individuals	NA	6p21.33		rs7753892-C	0.3652	2E-14		0.15056	[0.11-0.19] unit increase	Illumina [7506463] (imputed)	N
822	chr6	31154361	31154362	rs13203101	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p21.33	NR	rs13203101-?	NR	3E-15		0.1435	[0.11-0.18] unit decrease	Illumina [at least 560000] (imputed)	N
822	chr6	31154433	31154434	rs3130458	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	POU5F1	rs3130458-T	NR	6E-12		0.0238773	[0.017-0.031] unit decrease	Affymetrix [323858] (imputed)	N
822	chr6	31154433	31154434	rs3130458	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	POU5F1	rs3130458-T	NR	3E-11		0.0230527	[0.016-0.03] unit decrease	Affymetrix [127266] (imputed)	N
822	chr6	31154819	31154820	rs6922051	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	POU5F1	rs6922051-C	NR	7E-12		0.0225553	[0.016-0.029] unit decrease	Affymetrix [323123] (imputed)	N
822	chr6	31155784	31155785	rs1265181	30921485	Bejaoui Y	2019-03-28	Exp Dermatol	Genome-wide association study of psoriasis in an Egyptian population.	Psoriasis	215 Egyptian ancestry cases, 416 Egyptian ancestry controls	321 Egyptian ancestry cases, 253 Egyptian ancestry controls	6p21.33	HCG27	rs1265181-?	NR	1E-10		2.0	[1.62-2.45]	Illumina [312245]	N
822	chr6	31155784	31155785	rs1265181	19169255	Zhang XJ	2009-01-25	Nat Genet	Psoriasis genome-wide association study identifies susceptibility variants within LCE gene cluster at 1q21.	Psoriasis	1,139 Han Chinese ancestry cases, 1,132 Han Chinese ancestry controls	5,721 Chinese ancestry cases, 7,340 Chinese ancestry controls	6p21.33	MHC	rs1265181-?	NR	2E-208		22.62		Illumina [494902]	N
822	chr6	31156040	31156041	rs9368661	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	6p21.33	NR	rs9368661-T	0.258577	1E-19		0.02376896	[0.019-0.029] unit increase	Affymetrix [93095623] (imputed)	N
822	chr6	31156187	31156188	rs9263850	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG299F13.17	rs9263850-G	NR	1E-9		0.0190638	[0.013-0.025] unit decrease	Affymetrix [321016] (imputed)	N
822	chr6	31156187	31156188	rs9263850	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG299F13.17	rs9263850-G	NR	5E-16		0.0275644	[0.021-0.034] unit decrease	Affymetrix [323123] (imputed)	N
822	chr6	31158183	31158184	rs9295958	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG299F13.17	rs9295958-A	NR	1E-10		0.0250366	[0.017-0.033] unit decrease	Affymetrix [323123] (imputed)	N
822	chr6	31158560	31158560	rs145171179	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	6p21.33	XXbac-BPG299F13.17	rs145171179-GA	0.212169	4E-9		0.020656763	[0.014-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
822	chr6	31158632	31158633	rs9263861	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	6p21.33	HLA region	rs9263861-?	NR	3E-8	(EA)			Affymetrix, Illumina [10537485] (imputed)	N
822	chr6	31158632	31158633	rs9263861	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	6p21.33	HLA region	rs9263861-?	NR	3E-8				Affymetrix, Illumina [10537485] (imputed)	N
822	chr6	31158831	31158832	rs7741829	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	6p21.33	XXbac-BPG299F13.17	rs7741829-C	0.289979	2E-13		0.019235091	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
822	chr6	31159019	31159020	rs7742179	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG299F13.17	rs7742179-A	NR	3E-13		0.0215095	[0.016-0.027] unit decrease	Affymetrix [321016] (imputed)	N
822	chr6	31159019	31159020	rs7742179	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG299F13.17	rs7742179-A	NR	9E-21		0.0299448	[0.024-0.036] unit decrease	Affymetrix [323123] (imputed)	N
822	chr6	31159810	31159812	rs550239034	31577861	Dai J	2019-10-31	Int J Cancer	Genome-wide association study of INDELs identified four novel susceptibility loci associated with lung cancer risk.	Lung cancer	20,871 European ancestry cases, 15,971 European ancestry controls, 2,331 Chinese ancestry cases, 3,077 Chinese ancestry controls	NA	6p21.33	POU5F1	rs550239034-D	0.25	2E-7		0.92	[0.89-0.95]	Illumina [484196]	N
822	chr6	31160597	31160603	rs111279592	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	6p21.33	HCG27	rs111279592-T	0.837737	6E-59		0.05130919	[0.045-0.058] unit decrease	Affymetrix [93095623] (imputed)	N
822	chr6	31163971	31163972	rs28749551	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	6p21.33	XXbac-BPG299F13.17	rs28749551-C	0.189749	9E-23		0.029464645	[0.024-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
822	chr6	31163971	31163972	rs28749551	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	6p21.33	XXbac-BPG299F13.17	rs28749551-C	0.1902	8E-18		0.03930922	[0.03-0.048] unit decrease	Affymetrix [~ 2500000] (imputed)	N
822	chr6	31164778	31164779	rs28362333	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	6p21.33		rs28362333-C	0.530396419	7E-20		0.08448383	[0.066-0.103] unit increase	Illumina [13429769] (imputed)	N
822	chr6	31165835	31165836	rs28362345	31935283	Du Z	2020-01-01	Blood Adv	A meta-analysis of genome-wide association studies of multiple myeloma among men and women of African ancestry.	Multiple myeloma	1,813 African American and African ancestry cases, 8,871 African American and African ancestry controls	NA	6p21.33	NR	rs28362345-T	0.7	6E-7		1.24	[1.14-1.34]	Illumina [12683648] (imputed)	N
822	chr6	31168028	31168029	rs6903896	20585627	Eriksson N	2010-06-24	PLoS Genet	Web-based, participant-driven studies yield novel genetic associations for common traits.	Common traits (Other)	9,126 European ancestry individuals	NA	6p21.33	NR	rs6903896-?	NR	6E-7	(sneeze)			Illumina [535076]	N
822	chr6	31168396	31168397	rs9263868	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p21.33	NR	rs9263868-?	NR	4E-21		0.1525	[0.12-0.18] unit increase	Illumina [at least 560000] (imputed)	N
822	chr6	31168701	31168702	rs138864366	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs138864366-C	0.027	4E-32	(Cyclic AMP-responsive element-binding protein 3-like protein 4, CREB3L4.11308.8.3)	1.03	[0.85-1.21] unit increase	Affymetrix [10572788] (imputed)	N
822	chr6	31169570	31169571	rs28362359	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs28362359-C	0.875	4E-34				Affymetrix [10369434] (imputed)	N
822	chr6	31170013	31170014	rs9263869	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCG27	rs9263869-C	NR	1E-8		0.0173241	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
822	chr6	31170013	31170014	rs9263869	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HCG27	rs9263869-C	NR	3E-8		0.0168281	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
822	chr6	31170013	31170014	rs9263869	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCG27	rs9263869-C	NR	3E-10		0.0208071	[0.014-0.027] unit decrease	Affymetrix [323123] (imputed)	N
822	chr6	31170130	31170131	rs1793899	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCG27	rs1793899-A	NR	2E-14		0.0870835	[0.065-0.109] unit decrease	Affymetrix [321016] (imputed)	N
822	chr6	31170227	31170228	rs9366770	30980028	de Kovel CGF	2019-04-12	Sci Rep	The molecular genetics of hand preference revisited.	Handedness (Right-handed vs. non-right-handed)	293,857 British ancestry cases, 37,180 British ancestry controls	NA	6p21.33	HCG27	rs9366770-?	NR	2E-9				Affymetrix [~ 15000000] (imputed)	N
822	chr6	31170527	31170528	rs9263871	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	6p21.33	NR	rs9263871-?		2E-14	(MICA)			Illumina [NR]	N
822	chr6	31170527	31170528	rs9263871	24925725	Chung SA	2014-06-12	J Am Soc Nephrol	Lupus nephritis susceptibility loci in women with systemic lupus erythematosus.	Lupus nephritis in systemic lupus erythematosus	588 European ancestry cases, 1,412 European ancestry controls	NA	6p21.33	HCG27	rs9263871-G	NR	9E-6	(Dominant)	1.7	[1.35-2.13]	Affymetrix, Illumina [1621689] (imputed)	N
822	chr6	31170913	31170914	rs9263875	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HCG27	rs9263875-G	NR	6E-11		0.0190363	[0.013-0.025] unit increase	Affymetrix [321169] (imputed)	N
822	chr6	31171941	31171941	rs146660653	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCG27	rs146660653-ATCTAT	NR	4E-8		0.0193068	[0.012-0.026] unit decrease	Affymetrix [323123] (imputed)	N
822	chr6	31172150	31172151	rs3132510	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Diastolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	6p21.33	HCG27	rs3132510-C	0.6478	3E-14		0.3056	[0.23-0.38] mmHg increase	Affymetrix [NR] (imputed)	N
822	chr6	31172150	31172151	rs3132510	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p21.33	NR	rs3132510-?	NR	1E-7		5.296	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
822	chr6	31172150	31172151	rs3132510	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p21.33	NR	rs3132510-?	NR	4E-14		0.2588	[0.19-0.32] unit decrease	Illumina [at least 560000] (imputed)	N
822	chr6	31172350	31172351	rs3887381	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCG27	rs3887381-T	NR	8E-14		0.0210107	[0.015-0.027] unit increase	Affymetrix [319769] (imputed)	N
822	chr6	31172350	31172351	rs3887381	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HCG27	rs3887381-T	NR	2E-12		0.0197787	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
822	chr6	31172350	31172351	rs3887381	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCG27	rs3887381-T	NR	3E-20		0.0282671	[0.022-0.034] unit decrease	Affymetrix [323123] (imputed)	N
822	chr6	31174526	31174527	rs2894181	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCG27	rs2894181-G	NR	5E-9		0.0164875	[0.011-0.022] unit decrease	Affymetrix [321016] (imputed)	N
822	chr6	31174757	31174758	rs28744239	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p21.33	NR	rs28744239-C	0.147	5E-9	(IFNAR2_of_CD20p)			Illumina [5084123] (imputed)	N
822	chr6	31174929	31174930	rs185386680	26599303	Cheung CL	2016-01-12	Clin Pharmacol Ther	HLA-B*38:02:01 predicts carbimazole/methimazole-induced agranulocytosis.	Antithyroid drug-induced agranulocytosis	20 Southern Chinese ancestry cases, 775 East Asian ancestry controls	4 Southern Chinese ancestry cases, 387 East Asian ancestry controls	6p21.33	HLA-B*38:02:01	rs185386680-?	NR	4E-29		24.7	9.2-66.3	Illumina [5339940] (imputed)	N
822	chr6	31175945	31175946	rs1619179	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs for peptic ulcer and gastro-oesophageal reflux disease)	53,137 European ancestry cases, 79,230 European ancestry controls, 53,363 East Asian ancestry cases, 125,363 East Asian ancestry controls	NA	6p21.33		rs1619179-C	NR	4E-11		0.0701	[0.049-0.091] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
822	chr6	31175945	31175946	rs1619179	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (drugs for peptic ulcer and gastro-oesophageal reflux disease)	53,137 European ancestry cases, 79,230 European ancestry controls	NA	6p21.33	HCG27	rs1619179-C	0.154861	4E-11		0.07005687	[0.049-0.091] unit decrease	Affymetrix [7288503] (imputed)	N
822	chr6	31175945	31175946	rs1619179	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p21.33	NR	rs1619179-?	NR	3E-10		0.0882	[0.061-0.116] unit decrease	Illumina [at least 560000] (imputed)	N
822	chr6	31176245	31176246	rs4410769	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCG27	rs4410769-T	NR	2E-9		0.0188767	[0.013-0.025] unit increase	Affymetrix [323858] (imputed)	N
822	chr6	31176245	31176246	rs4410769	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HCG27	rs4410769-T	NR	3E-8		0.0173066	[0.011-0.023] unit increase	Affymetrix [127266] (imputed)	N
822	chr6	31177509	31177510	rs9501519	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCG27	rs9501519-T	NR	3E-11		0.0187496	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
822	chr6	31177509	31177510	rs9501519	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HCG27	rs9501519-T	NR	1E-10		0.0181428	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
822	chr6	31177657	31177658	rs9501520	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCG27	rs9501520-C	NR	2E-10		0.0200324	[0.014-0.026] unit increase	Affymetrix [323858] (imputed)	N
822	chr6	31177657	31177658	rs9501520	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HCG27	rs9501520-C	NR	6E-10		0.0194184	[0.013-0.026] unit increase	Affymetrix [127266] (imputed)	N
822	chr6	31178197	31178198	rs17191272	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCG27	rs17191272-C	NR	3E-11		0.020396	[0.014-0.026] unit decrease	Affymetrix [323123] (imputed)	N
822	chr6	31178968	31178969	rs36039697	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.33		rs36039697-G	0.748	2E-17				Affymetrix [10369434] (imputed)	N
822	chr6	31184195	31184196	rs3869109	22319020	Davies RW	2012-02-07	Circ Cardiovasc Genet	A genome-wide association study for coronary artery disease identifies a novel susceptibility locus in the major histocompatibility complex.	Coronary heart disease	7,123 European ancestry cases, 6,826 European ancestry controls	5,211 European ancestry cases, 5,821 European ancestry controls	6p21.33	HCG27, HLA-C	rs3869109-G	NR	1E-9		1.14	[NR]	Affymetrix [~ 5000000] (imputed)	N
822	chr6	31186025	31186026	rs9263963	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs9263963-T	0.113293342563644	1E-6	(IGP23)	0.2567	[0.15-0.36] unit increase	Illumina [~ 2500000] (imputed)	N
822	chr6	31187074	31187075	rs3130467	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (mother's age at death or mother's attained age)	up to 699,000 individuals	NA	6p21.33	NR	rs3130467-G		3E-7				Illumina [458525]	N
822	chr6	31191286	31191287	rs9263988	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.33		rs9263988-C	0.937	6E-19				Affymetrix [10369434] (imputed)	N
822	chr6	31192765	31192766	rs9263993	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	6p21.33	HLA region	rs9263993-?	NR	9E-9	(EA)			Affymetrix, Illumina [10537485] (imputed)	N
822	chr6	31192765	31192766	rs9263993	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	6p21.33	HLA region	rs9263993-?	NR	2E-7				Affymetrix, Illumina [10537485] (imputed)	N
822	chr6	31192796	31192797	rs6904670	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28- CD8+ T cell %CD8+ T cell	3,440 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs6904670-G	0.64142	3E-8		0.1458	[0.094-0.197] unit decrease	Illumina [18357815] (imputed)	N
823	chr6	31195217	31195218	rs6928399	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG299F13.16	rs6928399-T	NR	7E-12		0.0204256	[0.015-0.026] unit increase	Affymetrix [319769] (imputed)	N
823	chr6	31195217	31195218	rs6928399	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG299F13.16	rs6928399-T	NR	9E-11		0.0193191	[0.013-0.025] unit increase	Affymetrix [319769] (imputed)	N
823	chr6	31195217	31195218	rs6928399	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG299F13.16	rs6928399-T	NR	7E-11		0.0196879	[0.014-0.026] unit increase	Affymetrix [321169] (imputed)	N
823	chr6	31195995	31195996	rs7769059	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	6p21.33	HCG27	rs7769059-G	0.716625	1E-12		0.0150833	[0.011-0.019] unit increase	Affymetrix [NR] (imputed)	N
823	chr6	31197262	31197263	rs3134783	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Sarcoidosis	1,718 European ancestry cases, 484,955 European ancestry controls, 220 East Asian ancestry cases, 177,667 East Asian ancestry controls	NA	6p21.33		rs3134783-A	NR	6E-9		0.2583	[0.17-0.35] unit increase	Affymetrix, Illumina [25845061] (imputed)	N
823	chr6	31197513	31197514	rs3130941	24324648	Yatagai Y	2013-12-04	PLoS One	Genome-wide association study for levels of total serum IgE identifies HLA-C in a Japanese population.	IgE levels	967 Japanese ancestry individuals, 213 Japanese ancestry asthmatic individuals	1,894 Japanese ancestry individuals, 580 Japanese ancestry asthmatic individuals	6p21.33	HCG27, HLA-C	rs3130941-C	0.25	1E-10		0.098	unit increase	Illumina [479940]	N
823	chr6	31199207	31199208	rs3130473	29534301	Nishida N	2018-03-13	Hepatology	Key HLA-DRB1-DQB1 haplotypes and role of the BTNL2 gene for response to a hepatitis B vaccine.	Response to hepatitis B vaccine	107 Japanese ancestry low responder individuals, 351 Japanese ancestry intermediate responder individuals, 735 Japanese ancestry high responder individuals	NA	6p21.33	HLA-C	rs3130473-?		8E-6		0.128	unit decrease	Affymetrix [427664]	N
823	chr6	31199465	31199466	rs3869114	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.33		rs3869114-G	NR	2E-7		1.204	[1.122-1.292]	Affymetrix [7846216] (imputed)	N
823	chr6	31199765	31199766	rs11967684	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	6p21.33	intergenic	rs11967684-A	0.3428	2E-24		0.03858957	[0.031-0.046] unit increase	Affymetrix [~ 2500000] (imputed)	N
823	chr6	31199765	31199766	rs11967684	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	6p21.33	intergenic	rs11967684-A	0.3428	1E-29		0.04284561	[0.035-0.05] unit increase	Affymetrix [~ 2500000] (imputed)	N
823	chr6	31200763	31200764	rs7757622	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG299F13.16	rs7757622-C	NR	2E-16		0.023531	[0.018-0.029] unit decrease	Affymetrix [321169] (imputed)	N
823	chr6	31204693	31204694	rs3869115	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	46,511 Asian ancestry cases, 169,776 Asian ancestry controls	NA	6p21.33	NR	rs3869115-G	0.1981	1E-17		0.1004	[0.077-0.123] unit decrease	Affymetrix, Illumina [1077427] (imputed)	N
823	chr6	31204693	31204694	rs3869115	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p21.33	HCG27, HLA-C	rs3869115-C	0.06	6E-7	(Turkish)	2.23	[1.62-3.08]	Illumina [up to 547389]	N
823	chr6	31204985	31204986	rs3134770	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p21.33	NR	rs3134770-?	NR	8E-8		0.0723	[0.046-0.099] unit increase	Illumina [at least 560000] (imputed)	N
823	chr6	31206205	31206206	rs3130685	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Effector Memory CD8+ T cell Absolute Count	3,395 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs3130685-T	0.34389	2E-8		0.1803	[0.12-0.24] unit increase	Illumina [18332267] (imputed)	N
823	chr6	31206205	31206206	rs3130685	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8+ T cell Absolute Count	3,652 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs3130685-T	0.34283	4E-11		0.1887	[0.13-0.24] unit increase	Illumina [18427348] (imputed)	N
823	chr6	31206205	31206206	rs3130685	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8+ T cell %leukocyte	3,668 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs3130685-T	0.34283	1E-9		0.1801	[0.12-0.24] unit increase	Illumina [18430788] (imputed)	N
823	chr6	31206205	31206206	rs3130685	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28- CD8+ T cell Absolute Count	3,408 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs3130685-T	0.3439	3E-10		0.1894	[0.13-0.25] unit increase	Illumina [18340221] (imputed)	N
823	chr6	31206205	31206206	rs3130685	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD127- CD8+ T cell Absolute Count	3,371 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs3130685-T	0.34485	9E-10		0.1905	[0.13-0.25] unit increase	Illumina [18321960] (imputed)	N
823	chr6	31207762	31207763	rs9461666	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6p21.33		rs9461666-G	0.021815	7E-10		0.0478569	[0.033-0.063] unit increase	Affymetrix [93095623] (imputed)	N
823	chr6	31208054	31208055	rs5875302	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	349,856 European ancestry individuals, 91,908 East Asian ancestry individuals	NA	6p21.33		rs5875302-C	NR	9E-24		0.046	[0.037-0.055] unit decrease	Affymetrix, Illumina [20529536] (imputed)	N
823	chr6	31208590	31208591	rs3132497	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG299F13.16	rs3132497-G	NR	3E-9		0.0221455	[0.015-0.029] unit increase	Affymetrix [323123] (imputed)	N
823	chr6	31213224	31213225	rs117506082	32072174	Okamoto D	2020-02-19	Inflamm Bowel Dis	Genetic Analysis of Ulcerative Colitis in Japanese Individuals Using Population-specific SNP Array.	Ulcerative colitis	601 Japanese ancestry cases, 1,962 Japanese ancestry controls	1,075 Japanese ancestry cases, 419 Japanese ancestry controls	6p21.33	HLA	rs117506082-G	NR	4E-88		3.39	[2.99-3.83]	NR [4760823] (imputed)	N
823	chr6	31213316	31213317	rs1639106	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG299F13.16	rs1639106-T	NR	9E-12		0.0601547	[0.043-0.077] unit decrease	Affymetrix [321016] (imputed)	N
823	chr6	31213529	31213530	rs117759870	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs117759870-?		6E-8		1.06	[1.04-1.09]	Illumina [7645193] (imputed)	N
823	chr6	31218983	31218984	rs3130427	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	6p21.33		rs3130427-G	0.594789	2E-27		0.029043514	[0.024-0.034] unit increase	Affymetrix [93095623] (imputed)	N
823	chr6	31219957	31219958	rs55839536	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs55839536-A	NR	2E-8		0.023416	[0.015-0.032] unit decrease	Affymetrix [321016] (imputed)	N
823	chr6	31220243	31220244	rs7449932	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	6p21.33		rs7449932-C	0.223006	2E-9		0.0272642	[0.018-0.036] unit increase	NR [11722792] (imputed)	N
823	chr6	31220782	31220783	rs3130436	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	6p21.33	NR	rs3130436-?	NR	4E-7		0.0523	[0.032-0.072] unit decrease	Illumina [at least 560000] (imputed)	N
823	chr6	31220782	31220783	rs3130436	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	6p21.33	HCG27, HLA-C	rs3130436-?	NR	4E-7		1.0537407	[1.03-1.08]	Illumina [13754664] (imputed)	N
823	chr6	31221022	31221023	rs3130439	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LILRB1	5,363 Icelandic ancestry individuals	NA	6p21.33		rs3130439-G	0.4964	8E-23		0.179906	[0.14-0.22] unit decrease	Illumina [7506463] (imputed)	N
823	chr6	31221298	31221299	rs17197839	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-C	rs17197839-A	NR	1E-8		0.0267548	[0.018-0.036] unit decrease	Affymetrix [323123] (imputed)	N
823	chr6	31221298	31221299	rs17197839	33549134	Adolphe C	2021-02-06	Genome Med	Genetic and functional interaction network analysis reveals global enrichment of regulatory T cell genes influencing basal cell carcinoma susceptibility.	Basal cell carcinoma	17,416 European ancestry cases, 375,455 European ancestry controls	NA	6p21.33	HLA-C	rs17197839-A	0.118172	3E-11		0.1165139	[0.082-0.151] unit decrease	Affymetrix [7260263] (imputed)	N
823	chr6	31221350	31221351	rs1793892	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs1793892-C	NR	2E-9		0.0258258	[0.017-0.034] unit increase	Affymetrix [319769] (imputed)	N
823	chr6	31221350	31221351	rs1793892	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-C	rs1793892-C	NR	3E-9		0.0256321	[0.017-0.034] unit increase	Affymetrix [319769] (imputed)	N
823	chr6	31221368	31221369	rs17191538	33574277	Kawai Y	2021-02-11	NPJ Genom Med	Mapping of susceptible variants for cold medicine-related Stevens-Johnson syndrome by whole-genome resequencing.	Cold medicine-related Stevens-Johnson syndrome/toxic epidermal necrolysis (SJS/TEN) with severe ocular complications	133 Japanese ancestry cases, 418 Japanese ancestry controls	NA	6p21.33		rs17191538-G	0.2231	7E-7		2.483		Illumina [7608150]	N
823	chr6	31221667	31221668	rs3095254	25096241	Keller MF	2014-08-05	Hum Mol Genet	Trans-ethnic meta-analysis of white blood cell phenotypes.	Monocyte count	9,810 Japanese ancestry individuals, 16,550 European ancestry individuals, 7,369 African American individuals	NA	6p21.33	MHC	rs3095254-C	0.461	8E-9	(Japanese)	0.035	[0.023-0.047] unit increase	Illumina [NR] (imputed)	N
823	chr6	31221667	31221668	rs3095254	21738478	Okada Y	2011-06-30	PLoS Genet	Identification of nine novel loci associated with white blood cell subtypes in a Japanese population.	White blood cell types	8,794 Japanese ancestry individuals	5,998 Japanese ancestry individuals	6p21.33	MHC	rs3095254-C	0.46	6E-11	(monocyte count)	0.074	[0.05-0.09] unit increase	Illumina [2178645] (imputed)	N
823	chr6	31222180	31222181	rs1793889	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.33	CCHCR1, CDSN, HCG27, HLA-C, POU5F1, PSORS1C1, PSORS1C2, PSORS1C3, TCF19	rs1793889-?		1E-11		1.0869565	[1.06-1.11]	Affymetrix, Illumina [NR]	N
823	chr6	31224666	31224667	rs9264277	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.33		rs9264277-T	0.367	2E-13				Affymetrix [10369434] (imputed)	N
823	chr6	31224666	31224667	rs9264277	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.33		rs9264277-T	0.367	4E-8				Affymetrix [10369434] (imputed)	N
823	chr6	31224666	31224667	rs9264277	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.33		rs9264277-T	0.367	2E-36				Affymetrix [10369434] (imputed)	N
823	chr6	31224666	31224667	rs9264277	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	6p21.33		rs9264277-T	0.367	1E-9				Affymetrix [10369434] (imputed)	N
823	chr6	31224666	31224667	rs9264277	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs9264277-T	0.367	6E-12				Affymetrix [10369434] (imputed)	N
823	chr6	31224716	31224717	rs201871433	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	6p21.33		rs201871433-C	0.598843295	3E-14		0.080714226	[0.06-0.101] unit increase	Illumina [13134967] (imputed)	N
823	chr6	31226768	31226769	rs2440367	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs2440367-T	NR	4E-8		0.0177003	[0.011-0.024] unit increase	Affymetrix [321016] (imputed)	N
823	chr6	31227235	31227236	rs150543164	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	6p21.33	NR	rs150543164-C	0.971256	7E-11		0.0420252	[0.029-0.055] unit decrease	NR [NR]	N
823	chr6	31228184	31228185	rs9264354	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	6p21.33		rs9264354-T	0.225	2E-41				Affymetrix [10369434] (imputed)	N
823	chr6	31228185	31228186	rs9264355	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs9264355-T	NR	2E-11		0.0253701	[0.018-0.033] unit increase	Affymetrix [321016] (imputed)	N
823	chr6	31228356	31228357	rs6939900	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	6p21.33		rs6939900-C	0.644363	2E-13		0.0298309	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
823	chr6	31228356	31228357	rs6939900	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	6p21.33		rs6939900-C	0.644357	3E-11		0.0278375	[0.02-0.036] unit decrease	NR [11722792] (imputed)	N
823	chr6	31228356	31228357	rs6939900	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.33		rs6939900-T	0.35467	3E-26		0.03356077	[0.027-0.04] unit increase	Affymetrix [93095623] (imputed)	N
823	chr6	31228539	31228540	rs17191797	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	6p21.33	intergenic	rs17191797-G	0.0881	1E-10		0.04047984	[0.028-0.053] unit decrease	Affymetrix [~ 2500000] (imputed)	N
823	chr6	31229551	31229552	rs2844626	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Varicose veins	22,037 European ancestry cases, 437,665 European ancestry controls, 474 East Asian ancestry cases, 178,252 East Asian ancestry controls	NA	6p21.33		rs2844626-T	NR	1E-10		0.0734	[0.051-0.096] unit decrease	Affymetrix, Illumina [25842955] (imputed)	N
823	chr6	31229722	31229723	rs9264408	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs9264408-G	NR	5E-13		0.0253984	[0.019-0.032] unit decrease	Affymetrix [319769] (imputed)	N
823	chr6	31229722	31229723	rs9264408	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-C	rs9264408-G	NR	3E-12		0.0245478	[0.018-0.031] unit decrease	Affymetrix [319769] (imputed)	N
823	chr6	31229929	31229930	rs9264413	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	6p21.33	intergenic	rs9264413-T	0.8098	4E-40		0.0600596	[0.051-0.069] unit decrease	Affymetrix [~ 2500000] (imputed)	N
823	chr6	31229992	31229993	rs17192134	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	6p21.33		rs17192134-G	0.916	3E-52				Affymetrix [10369434] (imputed)	N
823	chr6	31229992	31229993	rs17192134	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p21.33	NR	rs17192134-T	0.084521	2E-25		0.048713	[0.04-0.058] unit increase	Affymetrix [93095623] (imputed)	N
823	chr6	31230437	31230438	rs17192225	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Prostate cancer	7,438 White British ancestry cases, 118,206 White British ancestry controls	NA	6p21.33		rs17192225-?	NR	2E-6		1.12175	[1.07-1.17]	NR [680312]	N
823	chr6	31230716	31230717	rs9357120	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	91,908 East Asian ancestry individuals	NA	6p21.33		rs9357120-A	0.563923	1E-31		0.0533207	[0.044-0.062] unit decrease	Illumina [13469940] (imputed)	N
823	chr6	31230716	31230717	rs9357120	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	81,042 East Asian ancestry individuals	NA	6p21.33	NR	rs9357120-T	0.42999	6E-32		0.058958	[0.049-0.069] SD units increase	Affymetrix, Illumina [16286709] (imputed)	N
823	chr6	31231988	31231989	rs2853961	31080455	Fatumo S	2019-04-26	Front Genet	Complimentary Methods for Multivariate Genome-Wide Association Study Identify New Susceptibility Genes for Blood Cell Traits.	Blood cell traits (multivariate analysis)	up to 6,407 Sub-Saharan African ancestry individuals	NA	6p21.33	HLA-C	rs2853961-?	NR	4E-8				Illumina [20594536] (imputed)	N
823	chr6	31232110	31232111	rs3130542	25802187	Jiang DK	2015-04-28	Hepatology	Genetic variants in five novel loci including CFB and CD40 predispose to chronic hepatitis B.	Chronic hepatitis B infection	2,514 Chinese ancestry cases, 1,130 Chinese ancestry controls	6,600 Chinese ancestry cases, 8,127 Chinese ancestry controls	6p21.33	HLA-C	rs3130542-A	0.16	9E-7		1.17	[1.10-1.24]	Illumina [3680900] (imputed)	N
823	chr6	31232110	31232111	rs3130542	24162738	Hu Z	2013-10-27	Nat Genet	New loci associated with chronic hepatitis B virus infection in Han Chinese.	Hepatitis B	951 Han Chinese ancestry HBV carrier cases, 937 Han Chinese ancestry HBV cleared controls	4,230 Chinese ancestry HBV carrier cases, 3,051 Chinese ancestry HBV cleared controls, 2,622 Chinese ancestry controls	6p21.33	HLA-C	rs3130542-A	0.13	9E-14		1.33	[1.23-1.44]	Illumina [490610]	N
823	chr6	31232450	31232451	rs2524108	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs2524108-G	NR	1E-9		0.0191519	[0.013-0.025] unit decrease	Affymetrix [319769] (imputed)	N
823	chr6	31232450	31232451	rs2524108	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-C	rs2524108-G	NR	4E-9		0.0186193	[0.012-0.025] unit decrease	Affymetrix [319769] (imputed)	N
823	chr6	31232450	31232451	rs2524108	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.33	HLA-C	rs2524108-G	0.273435	6E-44		0.050841797	[0.044-0.058] unit decrease	Affymetrix [93095623] (imputed)	N
823	chr6	31232542	31232543	rs2844623	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	6p21.33	POU5F1, TCF19	rs2844623-C	0.78	1E-17		1.1	1.08-1.12	Illumina [12557761] (imputed)	N
823	chr6	31232823	31232824	rs2524106	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs2524106-A	NR	1E-8		0.0194959	[0.013-0.026] unit increase	Affymetrix [319769] (imputed)	N
823	chr6	31232823	31232824	rs2524106	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-C	rs2524106-A	NR	4E-8		0.0188058	[0.012-0.026] unit increase	Affymetrix [319769] (imputed)	N
823	chr6	31232909	31232910	rs2524105	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	86,890 East Asian ancestry individuals	NA	6p21.33	NR	rs2524105-G	0.317247	4E-41		0.06908	[0.059-0.079] SD units increase	Affymetrix, Illumina [16279099] (imputed)	N
823	chr6	31233115	31233116	rs1248395773	33974707	Gabrielaite M	2021-05-11	J Infect Dis	Human immunotypes impose selection on viral genotypes through viral epitope specificity.	Viral variant GAG242N carrier status in HIV infection	21 Asian ancestry individuals, 432 African ancestry individuals, 382 Hispanic or Latin American individuals, 1,250 European ancestry individuals, 37 individuals	NA	6p21.33		rs1248395773-?	NR	1E-79				Affymetrix [388501]	N
823	chr6	31234493	31234494	rs9264533	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	6p21.33	HLA-C	rs9264533-C	0.8091	4E-33		0.05433897	[0.045-0.063] unit increase	Affymetrix [~ 2500000] (imputed)	N
823	chr6	31234642	31234643	rs185207145	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin	108,054 Japanese ancestry individuals	NA	6p21.33	HCG27, HLA-C	rs185207145-?	NR	1E-8		0.05419	[0.036-0.073] unit increase novel	Illumina [6108953] (imputed)	N
823	chr6	31235192	31235193	rs113509869	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	6p21.33	HLA-C	rs113509869-A	0.123764	9E-21		0.036061548	[0.029-0.044] unit decrease	Affymetrix [93095623] (imputed)	N
823	chr6	31235260	31235261	rs2395470	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs2395470-A	NR	5E-15		0.0233443	[0.017-0.029] unit increase	Affymetrix [319769] (imputed)	N
823	chr6	31235260	31235261	rs2395470	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-C	rs2395470-A	NR	5E-14		0.0224589	[0.017-0.028] unit increase	Affymetrix [319769] (imputed)	N
823	chr6	31235354	31235354	rs139175860	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	6p21.33		rs139175860-TC	0.201723	2E-12		0.0316515	[0.023-0.04] unit increase	Illumina [13476299] (imputed)	N
823	chr6	31235504	31235505	rs2853953	25802187	Jiang DK	2015-04-28	Hepatology	Genetic variants in five novel loci including CFB and CD40 predispose to chronic hepatitis B.	Chronic hepatitis B infection	2,514 Chinese ancestry cases, 1,130 Chinese ancestry controls	6,600 Chinese ancestry cases, 8,127 Chinese ancestry controls	6p21.33	HLA-C	rs2853953-A	0.9	5E-20		1.47	[1.35-1.59]	Illumina [3680900] (imputed)	N
823	chr6	31235745	31235746	rs9264579	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	6p21.33		rs9264579-A	0.344224	5E-18		0.0325012	[0.025-0.04] unit increase	Illumina [13476266] (imputed)	N
823	chr6	31236114	31236115	rs2853951	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-C	rs2853951-C	NR	3E-19		0.0279053	[0.022-0.034] unit increase	Affymetrix [323123] (imputed)	N
823	chr6	31236174	31236175	rs2853950	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs2853950-T	NR	1E-10		0.0182212	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
823	chr6	31236174	31236175	rs2853950	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-C	rs2853950-T	NR	4E-10		0.0177105	[0.012-0.023] unit increase	Affymetrix [319769] (imputed)	N
823	chr6	31236174	31236175	rs2853950	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HLA-C	rs2853950-T	NR	2E-9		0.0171726	[0.012-0.023] unit increase	Affymetrix [321169] (imputed)	N
823	chr6	31236409	31236410	rs34131062	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	6p21.33	MICB	rs34131062-?	NR	3E-10	(S_VLDL_TG)	0.07202289	NR unit increase	Illumina [609262]	N
823	chr6	31236409	31236410	rs34131062	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	6p21.33	MICB	rs34131062-?	NR	1E-9	(VLDL_TG)	0.071520545	NR unit increase	Illumina [609262]	N
823	chr6	31236409	31236410	rs34131062	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	6p21.33	MICB	rs34131062-?	NR	8E-9	(S_VLDL_TG)	0.07218766	NR unit increase	Illumina [609262]	N
823	chr6	31236409	31236410	rs34131062	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	6p21.33	MICB	rs34131062-?	NR	1E-8	(VLDL_TG)	0.0707539	NR unit increase	Illumina [609262]	N
823	chr6	31236466	31236467	rs2524096	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TXNDC15	5,352 Icelandic ancestry individuals	NA	6p21.33		rs2524096-T	0.3782	1E-49		0.267181	[0.23-0.3] unit decrease	Illumina [7506463] (imputed)	N
823	chr6	31236566	31236567	rs1049281	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI in non-smokers	75,379 European ancestry women, 45,811 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	6p21.33	HLA-C	rs1049281-C	0.653	2E-8		0.027	[0.017-0.037] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
823	chr6	31236566	31236567	rs1049281	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (joint analysis main effects and smoking interaction)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	6p21.33	HLA-C	rs1049281-C	0.652	2E-10				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
823	chr6	31236566	31236567	rs1049281	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	6p21.33	HLA-C	rs1049281-C	0.652	1E-18		0.026	[0.02-0.032] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
823	chr6	31236684	31236685	rs3207561	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.33		rs3207561-A	0.623	4E-27				Affymetrix [10369434] (imputed)	N
823	chr6	31236686	31236687	rs3207555	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	6p21.33	HLA-C	rs3207555-A	0.34675	4E-12		0.017413307	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
823	chr6	31237060	31237061	rs2894204	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	6p21.33	NA	rs2894204-T	0.6383	8E-25		0.0209	[0.017-0.025] unit increase	NR [~ 27400000] (imputed)	N
823	chr6	31237060	31237061	rs2894204	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	6p21.33	NR	rs2894204-T	0.6383	8E-25		0.0209	[0.017-0.025] unit increase	NR [~ 27400000] (imputed)	N
823	chr6	31237702	31237703	rs17886880	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs17886880-A	NR	1E-10		0.0204376	[0.014-0.027] unit increase	Affymetrix [319769] (imputed)	N
823	chr6	31237702	31237703	rs17886880	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-C	rs17886880-A	NR	1E-9		0.0194517	[0.013-0.026] unit increase	Affymetrix [319769] (imputed)	N
823	chr6	31237702	31237703	rs17886880	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs17886880-A	NR	2E-11		0.0214244	[0.015-0.028] unit decrease	Affymetrix [321016] (imputed)	N
823	chr6	31237775	31237776	rs1050118	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	121,047 East Asian ancestry individuals	NA	6p21.33	NR	rs1050118-C	0.759821	5E-17		0.039726	[0.03-0.049] SD units decrease	Affymetrix, Illumina [16286195] (imputed)	N
823	chr6	31237857	31237858	rs34794906	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-C	rs34794906-C	NR	7E-15		0.027207	[0.02-0.034] unit decrease	Affymetrix [323123] (imputed)	N
823	chr6	31237857	31237858	rs34794906	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	6p21.33	HLA-C	rs34794906-C	0.2643	2E-23		0.04089973	[0.033-0.049] unit increase	Affymetrix [~ 2500000] (imputed)	N
823	chr6	31238317	31238318	rs9264638	23417110	Tin A	2013-02-16	Hum Genet	Genome-wide association study identified the human leukocyte antigen region as a novel locus for plasma beta-2 microglobulin.	Beta-2 microglubulin plasma levels	6,728 European ancestry individuals		6p21.33	HLA-C	rs9264638-A	0.58	2E-23		0.04	[0.032-0.048] unit decrease	Affymetrix [2500000] (imputed)	N
823	chr6	31238321	31238322	rs9264639	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	6p21.33	HLA-C	rs9264639-C	0.8898	2E-8		5.601	NR z score decrease	Illumina [26237160] (imputed)	N
823	chr6	31238489	31238490	rs9264642	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-C	rs9264642-T	NR	7E-14		0.0238148	[0.018-0.03] unit decrease	Affymetrix [323858] (imputed)	N
823	chr6	31238489	31238490	rs9264642	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HLA-C	rs9264642-T	NR	4E-12		0.0220978	[0.016-0.028] unit decrease	Affymetrix [127266] (imputed)	N
823	chr6	31239048	31239049	rs1065406	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	6p21.33	HLA-C	rs1065406-T	0.026891	1E-10		0.048755113	[0.034-0.064] unit increase	Affymetrix [93095623] (imputed)	N
823	chr6	31239056	31239057	rs2308575	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	6p21.33		rs2308575-T	NR	1E-224		0.0839	[0.079-0.089] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
823	chr6	31239056	31239057	rs2308575	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	White blood cell count	8,825 African American individuals, 18,251 Hispanic/Latino individuals, 543 Asian ancestry individuals, 606 Native American ancestry individuals, 383 individuals	NA	6p21.33	NR	rs2308575-?	NR	9E-7		0.01349677	[0.0081-0.0189] unit increase	Illumina [30613845] (imputed)	N
823	chr6	31239226	31239227	rs9264664	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Adrenomedullin levels	21,758 European ancestry individuals	9,173 individuals	6p21.33		rs9264664-T	0.67	2E-12		0.0668	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
823	chr6	31239295	31239296	rs9264666	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs9264666-G	NR	6E-11		0.0183937	[0.013-0.024] unit increase	Affymetrix [321016] (imputed)	N
823	chr6	31239304	31239305	rs17879195	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-C	rs17879195-T	NR	3E-10		0.0253256	[0.017-0.033] unit decrease	Affymetrix [323123] (imputed)	N
823	chr6	31239429	31239430	rs41543814	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-C	rs41543814-T	NR	7E-11		0.0205232	[0.014-0.027] unit increase	Affymetrix [323858] (imputed)	N
823	chr6	31239429	31239430	rs41543814	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HLA-C	rs41543814-T	NR	7E-10		0.0194382	[0.013-0.026] unit increase	Affymetrix [127266] (imputed)	N
823	chr6	31239448	31239449	rs28626310	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs28626310-G	NR	4E-12		0.0245555	[0.018-0.031] unit decrease	Affymetrix [319769] (imputed)	N
823	chr6	31239448	31239449	rs28626310	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-C	rs28626310-G	NR	3E-11		0.0236059	[0.017-0.031] unit decrease	Affymetrix [319769] (imputed)	N
823	chr6	31239448	31239449	rs28626310	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HLA-C	rs28626310-G	NR	3E-10		0.0226589	[0.016-0.03] unit decrease	Affymetrix [321169] (imputed)	N
823	chr6	31239505	31239506	rs1050414	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Psoriasis vulgaris	206 East Asian ancestry cases, 172,289 East Asian ancestry controls	NA	6p21.33		rs1050414-G	0.029861158	6E-14		3.1940312	[2.36-4.03] unit increase	Illumina [13429050] (imputed)	N
823	chr6	31239517	31239518	rs1050420	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs1050420-T	NR	1E-11		0.0196904	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
823	chr6	31239517	31239518	rs1050420	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-C	rs1050420-T	NR	1E-10		0.0188138	[0.013-0.025] unit increase	Affymetrix [319769] (imputed)	N
823	chr6	31239517	31239518	rs1050420	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs1050420-T	NR	2E-8		0.016265	[0.011-0.022] unit decrease	Affymetrix [321016] (imputed)	N
823	chr6	31239517	31239518	rs1050420	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8 on CD8+ T cell	3,113 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs1050420-T	0.57866	2E-15		0.2317	[0.18-0.29] unit increase	Illumina [18030777] (imputed)	N
823	chr6	31239517	31239518	rs1050420	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	6p21.33	HLA-C	rs1050420-T	0.371904	2E-15		0.020388147	[0.015-0.025] unit increase	Affymetrix [93095623] (imputed)	N
823	chr6	31239576	31239577	rs707911	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-C	rs707911-A	NR	1E-10		0.0201335	[0.014-0.026] unit decrease	Affymetrix [323858] (imputed)	N
823	chr6	31239576	31239577	rs707911	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HLA-C	rs707911-A	NR	2E-9		0.0186456	[0.013-0.025] unit decrease	Affymetrix [127266] (imputed)	N
823	chr6	31239576	31239577	rs707911	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-C	rs707911-A	NR	4E-19		0.027395	[0.021-0.033] unit increase	Affymetrix [323123] (imputed)	N
823	chr6	31239584	31239585	rs1050437	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gastric cancer	7,921 East Asian ancestry cases, 159,201 East Asian ancestry controls	NA	6p21.33		rs1050437-T	0.367701676	2E-10		0.1113395	[0.077-0.145] unit decrease	Illumina [13428249] (imputed)	N
823	chr6	31239820	31239821	rs2308527	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-C	rs2308527-G	NR	1E-10		0.0203077	[0.014-0.027] unit decrease	Affymetrix [323858] (imputed)	N
823	chr6	31239820	31239821	rs2308527	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HLA-C	rs2308527-G	NR	5E-9		0.0185054	[0.012-0.025] unit decrease	Affymetrix [127266] (imputed)	N
823	chr6	31240040	31240041	rs2524094	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GZMA	5,361 Icelandic ancestry individuals	NA	6p21.33		rs2524094-C	0.3792	4E-35		0.236005	[0.2-0.27] unit decrease	Illumina [7506463] (imputed)	N
823	chr6	31240040	31240041	rs2524094	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-C	rs2524094-C	NR	6E-17		0.0258625	[0.02-0.032] unit increase	Affymetrix [323123] (imputed)	N
823	chr6	31240059	31240060	rs2844622	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs2844622-A	NR	4E-23		0.0292963	[0.024-0.035] unit increase	Affymetrix [321016] (imputed)	N
823	chr6	31240430	31240431	rs2074488	23144326	Kim DK	2012-11-09	Am J Respir Crit Care Med	Genome-wide association analysis of blood biomarkers in chronic obstructive pulmonary disease.	Chronic obstructive pulmonary disease-related biomarkers	Up to 1,951 European ancestry smokers	NA	6p21.33	HLA-C	rs2074488-T	0.13	2E-10	(SP-D)			Illumina [588352]	N
823	chr6	31240478	31240479	rs9357121	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.33		rs9357121-T	0.966	9E-15				Affymetrix [10369434] (imputed)	N
823	chr6	31240478	31240479	rs9357121	26582766	Lu X	2015-11-18	Circ Cardiovasc Genet	Genetic Susceptibility to Lipid Levels and Lipid Change Over Time and Risk of Incident Hyperlipidemia in Chinese Populations.	LDL cholesterol	8,344 Han Chinese ancestry individuals	14,739 Han Chinese ancestry individuals	6p21.33	HLA-C	rs9357121-T	0.85	3E-10		1.842	[1.25-2.43] unit increase	Affymetrix, Illumina [2573667] (imputed)	N
823	chr6	31240478	31240479	rs9357121	26582766	Lu X	2015-11-18	Circ Cardiovasc Genet	Genetic Susceptibility to Lipid Levels and Lipid Change Over Time and Risk of Incident Hyperlipidemia in Chinese Populations.	Cholesterol, total	8,344 Han Chinese ancestry individuals	14,739 Han Chinese ancestry individuals	6p21.33	HLA-C	rs9357121-T	0.85	2E-10		2.062	[1.42-2.71] unit increase	Affymetrix, Illumina [2573667] (imputed)	N
823	chr6	31240634	31240635	rs4361609	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	6p21.33	HLA-C, USP8P1	rs4361609-C	0.120687	1E-47		0.05005804	[0.043-0.057] unit decrease	Affymetrix [93095623] (imputed)	N
823	chr6	31240711	31240712	rs2249741	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs2249741-A	NR	1E-14		0.0216601	[0.016-0.027] unit decrease	Affymetrix [319769] (imputed)	N
823	chr6	31240711	31240712	rs2249741	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-C	rs2249741-A	NR	3E-13		0.0205289	[0.015-0.026] unit decrease	Affymetrix [319769] (imputed)	N
823	chr6	31240711	31240712	rs2249741	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs2249741-A	NR	1E-11		0.0190915	[0.014-0.025] unit increase	Affymetrix [321016] (imputed)	N
823	chr6	31240711	31240712	rs2249741	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HLA-C	rs2249741-A	NR	4E-13		0.0206435	[0.015-0.026] unit decrease	Affymetrix [321169] (imputed)	N
823	chr6	31240720	31240721	rs2249742	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large LDL	115,082 European ancestry individuals	NA	6p21.33		rs2249742-C	0.555622	3E-9		0.0244495	[0.016-0.033] unit decrease	NR [11722792] (imputed)	N
823	chr6	31240720	31240721	rs2249742	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in LDL	115,082 European ancestry individuals	NA	6p21.33		rs2249742-C	0.555622	2E-9		0.0247133	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
823	chr6	31240720	31240721	rs2249742	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large LDL	115,082 European ancestry individuals	NA	6p21.33		rs2249742-C	0.555622	2E-8		0.0230779	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
823	chr6	31240720	31240721	rs2249742	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in LDL	115,082 European ancestry individuals	NA	6p21.33		rs2249742-C	0.555622	2E-8		0.0234686	[0.015-0.032] unit decrease	NR [11722792] (imputed)	N
823	chr6	31240720	31240721	rs2249742	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	LDL cholesterol levels	115,082 European ancestry individuals	NA	6p21.33		rs2249742-C	0.555622	3E-9		0.0245814	[0.016-0.033] unit decrease	NR [11722792] (imputed)	N
823	chr6	31240720	31240721	rs2249742	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large LDL	115,082 European ancestry individuals	NA	6p21.33		rs2249742-C	0.555622	8E-10		0.025273	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
823	chr6	31240720	31240721	rs2249742	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large LDL	115,082 European ancestry individuals	NA	6p21.33		rs2249742-C	0.555622	4E-9		0.0242248	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
823	chr6	31240720	31240721	rs2249742	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs2249742-C	0.559	5E-180				Affymetrix [10369434] (imputed)	N
823	chr6	31240720	31240721	rs2249742	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p21.33	HLA-C, USP8P1	rs2249742-T	0.441322	3E-27		0.03629834	[0.03-0.043] unit increase	Affymetrix [93095623] (imputed)	N
823	chr6	31240720	31240721	rs2249742	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	6p21.33	HLA-C, USP8P1	rs2249742-T	0.441347	6E-25		0.026632145	[0.022-0.032] unit increase	Affymetrix [93095623] (imputed)	N
823	chr6	31240720	31240721	rs2249742	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.33	HLA-C, USP8P1	rs2249742-T	0.441398	2E-70		0.049990416	[0.044-0.056] unit increase	Affymetrix [93095623] (imputed)	N
823	chr6	31240720	31240721	rs2249742	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	6p21.33	NR	rs2249742-T	0.448909	4E-405		0.079592	[0.076-0.083] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
823	chr6	31240720	31240721	rs2249742	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p21.33	NR	rs2249742-T	0.465758	6E-421				Affymetrix, Illumina [23472807] (imputed)	N
823	chr6	31240720	31240721	rs2249742	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	White blood cell count	8,825 African American individuals, 18,251 Hispanic/Latino individuals, 543 Asian ancestry individuals, 606 Native American ancestry individuals, 383 individuals	NA	6p21.33	NR	rs2249742-?	NR	2E-7		0.01238585	[0.0077-0.0171] unit increase	Illumina [30613845] (imputed)	N
823	chr6	31240720	31240721	rs2249742	28158719	Jain D	2017-02-01	Hum Mol Genet	Genome-wide association of white blood cell counts in Hispanic/Latino Americans: the Hispanic Community Health Study/Study of Latinos.	White blood cell count (lymphocyte)	up to 11,809 Hispanic/Latino American individuals	up to 7,200 Hispanic/Latino American individuals	6p21.33	HLA-C	rs2249742-C	0.486	4E-8		0.0219	[0.014-0.03] unit decrease	Illumina [27887661] (imputed)	N
823	chr6	31240720	31240721	rs2249742	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	6p21.33	HLA-C, USP8P1	rs2249742-T	0.4405	5E-71		0.06448932	[0.057-0.072] unit increase	Affymetrix [~ 2500000] (imputed)	N
823	chr6	31240870	31240871	rs9264681	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs9264681-C	NR	1E-13		0.0225581	[0.017-0.029] unit increase	Affymetrix [319769] (imputed)	N
823	chr6	31240870	31240871	rs9264681	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-C	rs9264681-C	NR	3E-13		0.0223033	[0.016-0.028] unit increase	Affymetrix [319769] (imputed)	N
823	chr6	31240870	31240871	rs9264681	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-C	rs9264681-C	NR	2E-11		0.0221737	[0.016-0.029] unit decrease	Affymetrix [323123] (imputed)	N
823	chr6	31240870	31240871	rs9264681	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HLA-C	rs9264681-C	NR	4E-10		0.0192801	[0.013-0.025] unit increase	Affymetrix [321169] (imputed)	N
823	chr6	31241031	31241032	rs5010528	28062682	Carr DF	2017-01-05	J Antimicrob Chemother	Genome-wide association study of nevirapine hypersensitivity in a sub-Saharan African HIV-infected population.	Nevirapine-induced hypersensitivity in HIV (Stevens-Johnson syndrome or toxic epidermal necrosis)	51 Sub-saharan African ancestry cases, 182 Sub-saharan African ancestry controls	11 Sub-Saharan African ancestry cases, 27 African ancestry cases, 60 Sub-Saharan African ancestry controls, 8 African ancestry controls	6p21.33	HLA-C	rs5010528-G	0.14	8E-8		4.84	[2.71-8.61]	Illumina [14218511] (imputed)	N
823	chr6	31241091	31241092	rs2523599	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs2523599-C	NR	1E-21		0.0275701	[0.022-0.033] unit decrease	Affymetrix [319769] (imputed)	N
823	chr6	31241091	31241092	rs2523599	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-C	rs2523599-C	NR	7E-20		0.0263436	[0.021-0.032] unit decrease	Affymetrix [319769] (imputed)	N
823	chr6	31241091	31241092	rs2523599	33608531	Wu Y	2021-02-19	Nat Commun	GWAS of peptic ulcer disease implicates Helicobacter pylori infection, other gastrointestinal disorders and depression.	Irritable bowel syndrome	28,518 European ancestry cases, 426,803 European ancestry controls	NA	6p21.33	HLA-C	rs2523599-C	0.39	4E-8		0.95		NR [8546065] (imputed)	N
823	chr6	31241108	31241109	rs13191343	20953186	Huffmeier U	2010-10-17	Nat Genet	Common variants at TRAF3IP2 are associated with susceptibility to psoriatic arthritis and psoriasis.	Psoriatic arthritis	572 European ancestry cases, 888 European ancestry controls	Up to 1,761 European ancestry cases, 3,727 European ancestry controls	6p21.33	HLA-C	rs13191343-T	0.13	2E-72		2.37	[2.16-2.61]	Affymetrix [1585307] (imputed)	N
823	chr6	31241181	31241182	rs6900444	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs6900444-T	NR	4E-11		0.0186301	[0.013-0.024] unit decrease	Affymetrix [321016] (imputed)	N
823	chr6	31241181	31241182	rs6900444	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-C	rs6900444-T	NR	2E-15		0.0243915	[0.018-0.03] unit decrease	Affymetrix [323123] (imputed)	N
823	chr6	31241181	31241182	rs6900444	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	6p21.33	RNU6-283P	rs6900444-?	NR	1E-38		0.0342	[0.029-0.039] unit increase	Affymetrix [5701386] (imputed)	N
823	chr6	31241269	31241270	rs6900323	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs6900323-G	NR	3E-10		0.022084	[0.015-0.029] unit decrease	Affymetrix [319769] (imputed)	N
823	chr6	31241269	31241270	rs6900323	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-C	rs6900323-G	NR	2E-9		0.0211782	[0.014-0.028] unit decrease	Affymetrix [319769] (imputed)	N
823	chr6	31241269	31241270	rs6900323	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-C	rs6900323-G	NR	2E-8		0.0215495	[0.014-0.029] unit increase	Affymetrix [323123] (imputed)	N
823	chr6	31241638	31241639	rs2524084	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	151,807 East Asian ancestry individuals	NA	6p21.33	NR	rs2524084-A	0.427051	1E-53		0.056526	[0.049-0.064] SD units increase	Affymetrix, Illumina [16710636] (imputed)	N
823	chr6	31241638	31241639	rs2524084	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	88,929 East Asian ancestry individuals	NA	6p21.33	NR	rs2524084-A	0.42316	2E-35		0.059309	[0.05-0.069] SD units increase	Affymetrix, Illumina [16289044] (imputed)	N
823	chr6	31241638	31241639	rs2524084	31375628	Tengvall K	2019-08-02	Proc Natl Acad Sci U S A	Molecular mimicry between Anoctamin 2 and Epstein-Barr virus nuclear antigen 1 associates with multiple sclerosis risk.	Anti-anoctamin 2 antibody levels	11,936 European ancestry individuals	NA	6p21.33	NR	rs2524084-G	NR	3E-6		0.048	[0.024-0.072] unit decrease	Illumina [615763]	N
823	chr6	31241760	31241761	rs2524082	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	6p21.33	HLA-C, USP8P1	rs2524082-T	0.56	4E-65		0.06130488	[0.054-0.068] unit decrease	Affymetrix [~ 2500000] (imputed)	N
823	chr6	31242081	31242082	rs7764413	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	USP8P1	rs7764413-C	NR	8E-11		0.0182807	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
823	chr6	31242081	31242082	rs7764413	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	USP8P1	rs7764413-C	NR	1E-9		0.0172073	[0.012-0.023] unit increase	Affymetrix [319769] (imputed)	N
823	chr6	31242081	31242082	rs7764413	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p21.33	NR	rs7764413-C	0.463	2E-6	(IFNalpha_STAT1_of_CD8p_T)			Illumina [5084123] (imputed)	N
823	chr6	31242082	31242083	rs2524081	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p21.33	HLA-C	rs2524081-C		2E-19		0.03	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
823	chr6	31242082	31242083	rs2524081	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	6p21.33	HLA-C, USP8P1	rs2524081-C	0.1374	5E-11		0.03378154	[0.024-0.044] unit decrease	Affymetrix [~ 2500000] (imputed)	N
823	chr6	31242150	31242151	rs2844620	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	USP8P1	rs2844620-C	NR	4E-19		0.0254568	[0.02-0.031] unit decrease	Affymetrix [319769] (imputed)	N
823	chr6	31242150	31242151	rs2844620	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	USP8P1	rs2844620-C	NR	4E-11		0.0208679	[0.015-0.027] unit decrease	Affymetrix [323858] (imputed)	N
823	chr6	31242150	31242151	rs2844620	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	USP8P1	rs2844620-C	NR	3E-18		0.0247749	[0.019-0.03] unit decrease	Affymetrix [319769] (imputed)	N
823	chr6	31242150	31242151	rs2844620	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	USP8P1	rs2844620-C	NR	5E-10		0.0196514	[0.013-0.026] unit decrease	Affymetrix [127266] (imputed)	N
823	chr6	31242150	31242151	rs2844620	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	USP8P1	rs2844620-C	NR	9E-17		0.0239546	[0.018-0.03] unit decrease	Affymetrix [321169] (imputed)	N
823	chr6	31242173	31242174	rs2524079	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	6p21.33		rs2524079-A	NR	9E-270		0.0717	[0.068-0.076] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
823	chr6	31242173	31242174	rs2524079	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	82,810 East Asian ancestry individuals	NA	6p21.33		rs2524079-A	0.271529	6E-32		0.0612891	[0.051-0.072] unit increase	Illumina [13467171] (imputed)	N
823	chr6	31242173	31242174	rs2524079	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	6p21.33		rs2524079-A	NR	3E-162		0.0594	[0.055-0.064] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
823	chr6	31242173	31242174	rs2524079	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.33		rs2524079-G	0.583	4E-109				Affymetrix [10369434] (imputed)	N
823	chr6	31242173	31242174	rs2524079	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p21.33		rs2524079-G	0.583	2E-76				Affymetrix [10369434] (imputed)	N
823	chr6	31242173	31242174	rs2524079	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (lymphocyte)	21,347 Hispanic or Latin American individuals	NA	6p21.33		rs2524079-A	0.5566	1E-8		0.0648	[0.042-0.087] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
823	chr6	31242173	31242174	rs2524079	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	21,347 Hispanic or Latin American individuals	NA	6p21.33		rs2524079-A	0.5537	3E-10		0.0627	[0.043-0.082] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
823	chr6	31242173	31242174	rs2524079	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	USP8P1	rs2524079-A	NR	6E-11		0.0186395	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
823	chr6	31242173	31242174	rs2524079	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	USP8P1	rs2524079-A	NR	4E-10		0.0178594	[0.012-0.023] unit increase	Affymetrix [319769] (imputed)	N
823	chr6	31242173	31242174	rs2524079	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	USP8P1	rs2524079-A	NR	7E-9		0.0164819	[0.011-0.022] unit decrease	Affymetrix [321016] (imputed)	N
823	chr6	31242173	31242174	rs2524079	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	USP8P1	rs2524079-A	NR	1E-9		0.0175752	[0.012-0.023] unit increase	Affymetrix [321169] (imputed)	N
823	chr6	31242173	31242174	rs2524079	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	6p21.33	HLA-C, USP8P1	rs2524079-A	0.417269	1E-31		0.027049404	[0.023-0.032] unit increase	Affymetrix [93095623] (imputed)	N
823	chr6	31242173	31242174	rs2524079	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p21.33	NR	rs2524079-A	0.398304	1E-51				Affymetrix, Illumina [19905671] (imputed)	N
823	chr6	31242173	31242174	rs2524079	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	6p21.33	NR	rs2524079-A	0.419059	5E-51		0.031209	[0.027-0.035] SD unit increase	Affymetrix, Illumina [50036608] (imputed)	N
823	chr6	31242173	31242174	rs2524079	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	White blood cell count	8,825 African American individuals, 18,251 Hispanic/Latino individuals, 543 Asian ancestry individuals, 606 Native American ancestry individuals, 383 individuals	NA	6p21.33	NR	rs2524079-?	NR	1E-9		0.01475699	[0.01-0.019] unit increase	Illumina [30613845] (imputed)	N
823	chr6	31242173	31242174	rs2524079	28158719	Jain D	2017-02-01	Hum Mol Genet	Genome-wide association of white blood cell counts in Hispanic/Latino Americans: the Hispanic Community Health Study/Study of Latinos.	White blood cell count (lymphocyte)	up to 11,809 Hispanic/Latino American individuals	up to 7,200 Hispanic/Latino American individuals	6p21.33	NR	rs2524079-A	0.56	2E-8		0.016	[0.01-0.022] unit increase	Illumina [27887661] (imputed)	N
823	chr6	31242173	31242174	rs2524079	28158719	Jain D	2017-02-01	Hum Mol Genet	Genome-wide association of white blood cell counts in Hispanic/Latino Americans: the Hispanic Community Health Study/Study of Latinos.	White blood cell count	up to 11,809 Hispanic/Latino American individuals	up to 7,200 Hispanic/Latino American individuals	6p21.33	HLA-C	rs2524079-G	0.556	2E-8		0.213	[0.21-0.22] unit decrease	Illumina [27887661] (imputed)	N
823	chr6	31242173	31242174	rs2524079	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	6p21.33	HLA-C, USP8P1	rs2524079-A	0.4171	2E-126		0.08687249	[0.08-0.094] unit increase	Affymetrix [~ 2500000] (imputed)	N
823	chr6	31242173	31242174	rs2524079	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	6p21.33	HLA-C, USP8P1	rs2524079-A	0.4168	6E-68		0.06325533	[0.056-0.07] unit increase	Affymetrix [~ 2500000] (imputed)	N
823	chr6	31242173	31242174	rs2524079	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	6p21.33	HLA-C, USP8P1	rs2524079-A	0.4168	2E-68		0.06352314	[0.056-0.071] unit increase	Affymetrix [~ 2500000] (imputed)	N
823	chr6	31242173	31242174	rs2524079	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	6p21.33	HLA-C, USP8P1	rs2524079-A	0.4168	1E-67		0.0630379	[0.056-0.07] unit increase	Affymetrix [~ 2500000] (imputed)	N
823	chr6	31242173	31242174	rs2524079	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	6p21.33	HLA-C, USP8P1	rs2524079-A	0.4168	9E-69		0.06375719	[0.057-0.071] unit increase	Affymetrix [~ 2500000] (imputed)	N
823	chr6	31242173	31242174	rs2524079	21738480	Nalls MA	2011-07-01	PLoS Genet	Multiple loci are associated with white blood cell phenotypes.	White blood cell count	19,509 European ancestry individuals	11,823 European ancestry individuals	6p21.33	PSORS1C3, HCG27, HLA-C, HLA-B	rs2524079-A		1E-11	(Lymphocytes)	0.0148	[0.010-0.019] unit increase	Affymetrix, Illumina [> 2400000] (imputed)	N
823	chr6	31242190	31242191	rs12111032	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p21.33	HLA-C, HLA-B	rs12111032-G	0.24	1E-9	(EA)	2.32	[1.76-3.06]	Illumina [up to 547389]	N
823	chr6	31242222	31242223	rs2844619	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	USP8P1	rs2844619-C	NR	4E-24		0.0293712	[0.024-0.035] unit decrease	Affymetrix [319769] (imputed)	N
823	chr6	31242222	31242223	rs2844619	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	USP8P1	rs2844619-C	NR	8E-22		0.0278547	[0.022-0.034] unit decrease	Affymetrix [319769] (imputed)	N
823	chr6	31242222	31242223	rs2844619	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	USP8P1	rs2844619-C	NR	7E-20		0.0267656	[0.021-0.033] unit decrease	Affymetrix [321169] (imputed)	N
823	chr6	31242508	31242509	rs35989257	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	USP8P1	rs35989257-T	NR	6E-9		0.0198497	[0.013-0.027] unit decrease	Affymetrix [323123] (imputed)	N
823	chr6	31242508	31242509	rs35989257	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	USP8P1	rs35989257-T	NR	3E-9		0.0189318	[0.013-0.025] unit increase	Affymetrix [321169] (imputed)	N
823	chr6	31242638	31242639	rs2844616	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	USP8P1	rs2844616-C	NR	5E-17		0.0240156	[0.018-0.03] unit increase	Affymetrix [319769] (imputed)	N
823	chr6	31242638	31242639	rs2844616	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	USP8P1	rs2844616-C	NR	3E-16		0.0233918	[0.018-0.029] unit increase	Affymetrix [319769] (imputed)	N
823	chr6	31242638	31242639	rs2844616	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	6p21.33	USP8P1	rs2844616-C	NR	2E-9		0.0194652	[0.013-0.026] unit decrease	Affymetrix [323858] (imputed)	N
823	chr6	31242638	31242639	rs2844616	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	USP8P1	rs2844616-C	NR	7E-18		0.0267883	[0.021-0.033] unit decrease	Affymetrix [323123] (imputed)	N
823	chr6	31242730	31242731	rs12199223	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CD8A	5,365 Icelandic ancestry individuals	NA	6p21.33		rs12199223-A	0.08655	2E-61		0.542037	[0.48-0.61] unit increase	Illumina [7506463] (imputed)	N
823	chr6	31242730	31242731	rs12199223	30921485	Bejaoui Y	2019-03-28	Exp Dermatol	Genome-wide association study of psoriasis in an Egyptian population.	Psoriasis	215 Egyptian ancestry cases, 416 Egyptian ancestry controls	321 Egyptian ancestry cases, 253 Egyptian ancestry controls	6p21.33	HLA-C	rs12199223-?	NR	7E-18		2.49	[2.01-3.1]	Illumina [312245]	N
823	chr6	31242761	31242762	rs3134745	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	6p21.33	HLA-C, USP8P1	rs3134745-T	0.325625	5E-10		0.01714023	[0.012-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
823	chr6	31243346	31243347	rs9461680	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6p21.33		rs9461680-C	0.825202	3E-9		0.0310951	[0.021-0.041] unit increase	NR [11722792] (imputed)	N
823	chr6	31243346	31243347	rs9461680	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	6p21.33		rs9461680-C	0.825202	9E-11		0.032856	[0.023-0.043] unit increase	NR [11722792] (imputed)	N
823	chr6	31243358	31243359	rs9468911	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6p21.33		rs9468911-G	0.825215	1E-11		0.0349605	[0.025-0.045] unit decrease	NR [11722792] (imputed)	N
823	chr6	31243358	31243359	rs9468911	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6p21.33		rs9468911-G	0.825215	8E-12		0.0354702	[0.025-0.046] unit increase	NR [11722792] (imputed)	N
823	chr6	31243577	31243578	rs73390981	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	6p21.33		rs73390981-G	0.922	1E-33				Affymetrix [10369434] (imputed)	N
823	chr6	31243577	31243578	rs73390981	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	6p21.33	USP8P1	rs73390981-A	0.078064	3E-29		0.049712982	[0.041-0.058] unit increase	Affymetrix [93095623] (imputed)	N
823	chr6	31243614	31243615	rs13200569	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	6p21.33	USP8P1	rs13200569-A	0.285539	7E-13		0.01938597	[0.014-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
823	chr6	31243827	31243828	rs4141168	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	6p21.33		rs4141168-A	0.786459	2E-8		0.0267074	[0.017-0.036] unit increase	NR [11722792] (imputed)	N
823	chr6	31243829	31243830	rs2524076	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	USP8P1	rs2524076-G	NR	2E-14		0.0235806	[0.018-0.03] unit increase	Affymetrix [323123] (imputed)	N
823	chr6	31243829	31243830	rs2524076	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	USP8P1	rs2524076-G	NR	4E-15		0.0225429	[0.017-0.028] unit decrease	Affymetrix [321169] (imputed)	N
823	chr6	31243883	31243884	rs3130696	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	6p21.33	MICB	rs3130696-?	NR	5E-10	(XS_VLDL_TG)	0.06374044	NR unit decrease	Illumina [609262]	N
823	chr6	31243883	31243884	rs3130696	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	6p21.33	MICB	rs3130696-?	NR	3E-6	(XS_VLDL_TG)	0.059096735	NR unit decrease	Illumina [609262]	N
823	chr6	31243894	31243895	rs3094680	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	6p21.33	HLA	rs3094680-T	0.601913	1E-8		1.05	[1.03-1.06]	NR [8126035] (imputed)	N
823	chr6	31244788	31244789	rs2524069	27327535	Laville V	2016-06-21	Pigment Cell Melanoma Res	A genome-wide association study in Caucasian women suggests the involvement of HLA genes in the severity of facial solar lentigines.	Severity of facial solar lentigines	502 French ancestry individuals		6p21.33	USP8P1, HLA-C	rs2524069-T	0.13	3E-7				Illumina [795063]	N
823	chr6	31244959	31244960	rs6919908	26007630	Swaminathan B	2015-05-26	Nat Commun	Variants in ELL2 influencing immunoglobulin levels associate with multiple myeloma.	Multiple myeloma and monoclonal gammopathy	2,194 European ancestry multiple myeloma cases, 251 European ancestry monoclonal gammopathy cases, 294,390 European ancestry controls	586 European ancestry multiple myeloma cases, 2,111 European ancestry controls	6p21.33	PSORS1C2, HLA	rs6919908-T	0.23	6E-10		0.23	[NR] unit increase	Illumina [12100000] (imputed)	N
823	chr6	31244959	31244960	rs6919908	26007630	Swaminathan B	2015-05-26	Nat Commun	Variants in ELL2 influencing immunoglobulin levels associate with multiple myeloma.	Multiple myeloma	2,194 European ancestry cases, 222,555 European ancestry controls	586 European ancestry cases, 2,111 European ancestry controls	6p21.33	PSORS1C2, HLA	rs6919908-T	0.23	4E-10		0.25	[NR] unit increase	Illumina [12100000] (imputed)	N
823	chr6	31245359	31245360	rs9264744	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein KIR2DS2	5,354 Icelandic ancestry individuals	NA	6p21.33		rs9264744-A	0.2099	4E-24		0.220034	[0.18-0.26] unit increase	Illumina [7506463] (imputed)	N
823	chr6	31245359	31245360	rs9264744	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	USP8P1	rs9264744-A	NR	2E-11		0.0258443	[0.018-0.033] unit decrease	Affymetrix [321169] (imputed)	N
823	chr6	31245820	31245821	rs2524067	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p21.33	HLA-C, HLA-B	rs2524067-G	0.353	1E-25				Illumina [118177]	N
823	chr6	31246822	31246823	rs7383388	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6p21.33	RPL3P2	rs7383388-T	0.404081	1E-10		0.01745803	[0.012-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
823	chr6	31247202	31247203	rs2853946	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	USP8P1	rs2853946-T	NR	2E-9		0.0200045	[0.014-0.026] unit decrease	Affymetrix [323123] (imputed)	N
823	chr6	31247202	31247203	rs2853946	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	USP8P1	rs2853946-T	NR	5E-11		0.0201772	[0.014-0.026] unit increase	Affymetrix [321169] (imputed)	N
823	chr6	31247202	31247203	rs2853946	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	119,629 East Asian ancestry individuals	NA	6p21.33	NR	rs2853946-A	0.728288	8E-12		0.03126	[0.022-0.04] SD units decrease	Affymetrix, Illumina [16286228] (imputed)	N
823	chr6	31247202	31247203	rs2853946	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	White blood cell count	8,825 African American individuals, 18,251 Hispanic/Latino individuals, 543 Asian ancestry individuals, 606 Native American ancestry individuals, 383 individuals	NA	6p21.33	NR	rs2853946-?	NR	8E-7		0.0119414	[0.0072-0.0167] unit increase	Illumina [30613845] (imputed)	N
823	chr6	31247202	31247203	rs2853946	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.33	USP8P1	rs2853946-A	0.6837	8E-12		0.0519	[0.037-0.067] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
823	chr6	31247202	31247203	rs2853946	25096241	Keller MF	2014-08-05	Hum Mol Genet	Trans-ethnic meta-analysis of white blood cell phenotypes.	White blood cell count	16,843 Japanese ancestry individuals, 19,509 European ancestry individuals, 16,388 African American individuals	NA	6p21.33	HLA-B	rs2853946-A	0.717	8E-6	(Japanese)	0.013	[0.0071-0.0189] unit decrease	Illumina [NR] (imputed)	N
823	chr6	31247202	31247203	rs2853946	25096241	Keller MF	2014-08-05	Hum Mol Genet	Trans-ethnic meta-analysis of white blood cell phenotypes.	White blood cell count	16,843 Japanese ancestry individuals, 19,509 European ancestry individuals, 16,388 African American individuals	NA	6p21.33	HLA-B	rs2853946-A	0.348	1E-8	(EA)	0.017	[0.011-0.023] unit decrease	Illumina [NR] (imputed)	N
823	chr6	31247202	31247203	rs2853946	25096241	Keller MF	2014-08-05	Hum Mol Genet	Trans-ethnic meta-analysis of white blood cell phenotypes.	White blood cell count	16,843 Japanese ancestry individuals, 19,509 European ancestry individuals, 16,388 African American individuals	NA	6p21.33	HLA-B	rs2853946-?	NR	3E-14		0.0139	[0.010-0.017] unit decrease	Illumina [NR] (imputed)	N
823	chr6	31247405	31247406	rs112262437	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.33	NR	rs112262437-C	0.994	2E-27	(conditional)	6.006	[5.68-6.33]	Illumina [11270530] (imputed)	N
823	chr6	31247413	31247414	rs2844608	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	RPL3P2	rs2844608-T	NR	3E-19		0.0260453	[0.02-0.032] unit increase	Affymetrix [319769] (imputed)	N
823	chr6	31247413	31247414	rs2844608	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	RPL3P2	rs2844608-T	NR	2E-18		0.0254038	[0.02-0.031] unit increase	Affymetrix [319769] (imputed)	N
823	chr6	31247413	31247414	rs2844608	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4 on CD28+ CD4+ T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs2844608-T	0.45698	9E-10		0.1884	[0.13-0.25] unit increase	Illumina [17954496] (imputed)	N
823	chr6	31247870	31247871	rs2853943	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	RPL3P2	rs2853943-C	NR	2E-12		0.0232178	[0.017-0.03] unit increase	Affymetrix [319769] (imputed)	N
823	chr6	31247870	31247871	rs2853943	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	RPL3P2	rs2853943-C	NR	3E-12		0.0229712	[0.017-0.029] unit increase	Affymetrix [319769] (imputed)	N
823	chr6	31248431	31248432	rs2844606	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	RPL3P2	rs2844606-G	NR	2E-9		0.0190067	[0.013-0.025] unit increase	Affymetrix [323858] (imputed)	N
823	chr6	31248431	31248432	rs2844606	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	RPL3P2	rs2844606-G	NR	5E-8		0.017266	[0.011-0.023] unit increase	Affymetrix [127266] (imputed)	N
823	chr6	31248431	31248432	rs2844606	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	RPL3P2	rs2844606-G	NR	1E-13		0.021298	[0.016-0.027] unit increase	Affymetrix [321169] (imputed)	N
823	chr6	31248431	31248432	rs2844606	33204752	Butler-Laporte G	2020-09-24	Open Forum Infect Dis	Genetic Determinants of Antibody-Mediated Immune Responses to Infectious Diseases Agents: A Genome-Wide and HLA Association Study.	Anti-human herpes virus 6 IE1A IgG seropositivity	8,735 White British ancestry individuals	NA	6p21.33	RPL3P2	rs2844606-A	0.584	1E-8		0.1	unit decrease	NR [25472218] (imputed)	N
823	chr6	31248431	31248432	rs2844606	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	6p21.33	RPL3P2	rs2844606-G	0.417187	3E-23		0.025892606	[0.021-0.031] unit increase	Affymetrix [93095623] (imputed)	N
823	chr6	31248433	31248434	rs9264758	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p21.33	HLA-C	rs9264758-G	0.866	3E-7		0.082	[0.051-0.113] unit increase	Affymetrix, Illumina [7374092] (imputed)	N
823	chr6	31248590	31248591	rs2844605	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	RPL3P2	rs2844605-C	NR	7E-16		0.0250208	[0.019-0.031] unit decrease	Affymetrix [323123] (imputed)	N
823	chr6	31248677	31248678	rs9264759	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	93,063 East Asian ancestry individuals	NA	6p21.33		rs9264759-C	0.695944	2E-40		0.0639223	[0.055-0.073] unit decrease	Illumina [13470073] (imputed)	N
823	chr6	31249228	31249229	rs2853941	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	RPL3P2	rs2853941-C	NR	1E-9		0.0174735	[0.012-0.023] unit increase	Affymetrix [319769] (imputed)	N
823	chr6	31249397	31249398	rs9264764	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	RPL3P2	rs9264764-C	NR	4E-9		0.0168291	[0.011-0.022] unit increase	Affymetrix [319769] (imputed)	N
823	chr6	31249592	31249593	rs7766089	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	RPL3P2	rs7766089-G	NR	5E-19		0.0281143	[0.022-0.034] unit increase	Affymetrix [323123] (imputed)	N
823	chr6	31249592	31249593	rs7766089	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	RPL3P2	rs7766089-G	NR	2E-20		0.0271218	[0.021-0.033] unit decrease	Affymetrix [321169] (imputed)	N
823	chr6	31249731	31249732	rs2853940	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gastric cancer	1,029 European ancestry cases, 475,087 European ancestry controls, 7,921 East Asian ancestry cases, 159,201 East Asian ancestry controls	NA	6p21.33		rs2853940-C	NR	8E-12		0.1087	[0.078-0.14] unit increase	Affymetrix, Illumina [25843697] (imputed)	N
823	chr6	31249731	31249732	rs2853940	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	RPL3P2	rs2853940-C	NR	3E-17		0.0246751	[0.019-0.03] unit increase	Affymetrix [319769] (imputed)	N
823	chr6	31249731	31249732	rs2853940	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	RPL3P2	rs2853940-C	NR	4E-16		0.0237957	[0.018-0.03] unit increase	Affymetrix [319769] (imputed)	N
823	chr6	31250641	31250642	rs2853939	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	RPL3P2	rs2853939-T	NR	2E-28		0.033269	[0.027-0.039] unit increase	Affymetrix [323123] (imputed)	N
823	chr6	31252395	31252396	rs2524054	20045101	Ferreira MA	2009-12-31	Am J Hum Genet	Quantitative trait loci for CD4:CD8 lymphocyte ratio are associated with risk of type 1 diabetes and HIV-1 immune control.	CD8-positive T-lymphocyte count	2,538 European ancestry twins from 1,089 families	988 individuals from 550 families	6p21.33	HLA-B	rs2524054-A	0.32	6E-21		0.37	[0.31-0.43] SD increase	Illumina [529721]	N
823	chr6	31252395	31252396	rs2524054	20045101	Ferreira MA	2009-12-31	Am J Hum Genet	Quantitative trait loci for CD4:CD8 lymphocyte ratio are associated with risk of type 1 diabetes and HIV-1 immune control.	CD4:CD8 lymphocyte ratio	2,538 European ancestry twins from 1,089 families	988 individuals from 550 families	6p21.33	HLA-B	rs2524054-A	0.32	2E-28		0.37	[0.31-0.43] SD increase	Illumina [529721]	N
823	chr6	31252924	31252925	rs12191877	26626624	Stuart PE	2015-11-28	Am J Hum Genet	Genome-wide Association Analysis of Psoriatic Arthritis and Cutaneous Psoriasis Reveals Differences in Their Genetic Architecture.	Psoriatic arthritis	1,946 European ancestry cases, 4,934 European ancestry controls	up to 2,883 European ancestry cases, up to 14,179 European ancestry controls		HLA-C, HLA-B, HLA, MHC	rs12191877-T	NR	2E-99		2.416	NR	Illumina [11532644] (imputed)	N
823	chr6	31252924	31252925	rs12191877	20953188	Ellinghaus E	2010-10-17	Nat Genet	Genome-wide association study identifies a psoriasis susceptibility locus at TRAF3IP2.	Psoriasis	472 European ancestry cases, 1,146 European ancestry controls	2,668, European ancestry cases, 762 French Canadian founder population cases, 2,585 cases, 3,485 European ancestry controls, 994 French Canadian founder population controls, 2,412 controls		HLA-C	rs12191877-?	NR	4E-32		2.79	[2.35-3.33]	Illumina [2339118] (imputed)	N
823	chr6	31252924	31252925	rs12191877	19169254	Nair RP	2009-01-25	Nat Genet	Genome-wide scan reveals association of psoriasis with IL-23 and NF-kappaB pathways.	Psoriasis	1,359 European ancestry cases, 1,400 European ancestry controls	5,048 European ancestry cases, 5,041 European ancestry controls		HLA-C	rs12191877-T	0.15	1E-100		2.64	[NR]	Perlegen [~ 2500000] (imputed)	N
823	chr6	31254087	31254088	rs2853933	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	WASF5P	rs2853933-T	NR	5E-17		0.0264491	[0.02-0.033] unit decrease	Affymetrix [323858] (imputed)	N
823	chr6	31254087	31254088	rs2853933	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	WASF5P	rs2853933-T	NR	5E-15		0.0246973	[0.019-0.031] unit decrease	Affymetrix [127266] (imputed)	N
823	chr6	31255007	31255008	rs13214872	33385400	Patrick MT	2020-12-29	J Invest Dermatol	Causal relationship and shared genetic loci between psoriasis and type 2 diabetes through trans-disease meta-analysis.	Psoriasis or type 2 diabetes (trans-disease meta-analysis)	11,024 European ancestry psoriasis cases, 74,124 European ancestry diabetes cases, 840,342 European ancestry controls	NA		NR	rs13214872-G	NR	2E-302		1.67	NR	NR [8016731] (imputed)	N
823	chr6	31255441	31255442	rs114598080	32421744	Gzara C	2020-05-18	PLoS Pathog	Family-based genome-wide association study of leprosy in Vietnam.	Leprosy	1,749 Vietnamese ancestry cases	1,181 Vietnamese ancestry cases, 688 Vietnamese ancestry controls	6p21.33	HLA-C	rs114598080-A	0.1	9E-13		1.47	[1.46-1.48]	Illumina [5607170] (imputed)	N
823	chr6	31257510	31257511	rs2853928	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for VLDL particles	115,082 European ancestry individuals	NA	6p21.33		rs2853928-A	0.298678	8E-11		0.0272348	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
823	chr6	31257510	31257511	rs2853928	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	HLA-C, WASF5P, XXbac-BPG248L24.13, HLA-B, XXbac-BPG248L24.12, USP8P1, RPL3P2, XXbac-BPG248L24.10, MIR6891	rs2853928-A	0.2253521	3E-12	(EA, Granzyme A)	0.3627	[0.26-0.46] unit decrease	Affymetrix [509946]	N
823	chr6	31258392	31258393	rs2844594	34785669	Grosche S	2021-11-16	Nat Commun	Rare variant analysis in eczema identifies exonic variants in DUSP1, NOTCH4 and SLC9A4.	Eczema	20,016 European ancestry cases, 380,433 European ancestry controls	NA	6p21.33		rs2844594-A	0.1766	3E-14		1.12		Affymetrix, Illumina [9397031] (imputed)	N
823	chr6	31258392	31258393	rs2844594	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HVEM on naive CD8+ T cell	1,247 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs2844594-A	0.38517	2E-10		0.276	[0.19-0.36] unit decrease	Illumina [16410374] (imputed)	N
823	chr6	31258836	31258837	rs9468925	20526339	Quan C	2010-06-06	Nat Genet	Genome-wide association study for vitiligo identifies susceptibility loci at 6q27 and the MHC.	Vitiligo	1,117 Han Chinese ancestry cases, 1,429 Han Chinese ancestry controls	6,623 East Asian ancestry cases, 10,740 East Asian ancestry controls	6p21.33	HLA	rs9468925-?	0.617	2E-33		1.35	[1.28-1.41]	Illumina [493909]	N
823	chr6	31259578	31259579	rs2524163	27286809	Ligthart S	2016-06-10	BMC Genomics	Bivariate genome-wide association study identifies novel pleiotropic loci for lipids and inflammation.	C-reactive protein levels or triglyceride levels (pleiotropy)	65,000 individuals (C-reactive protein), 96,598 individuals (triglycerides)	NA	6p21.33	HLA-C	rs2524163-T	NR	8E-10				NR [25015711] (imputed)	N
823	chr6	31260127	31260128	rs115464798	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	6p21.33	WASF5P	rs115464798-A	0.056192	5E-21		0.049840536	[0.039-0.06] unit decrease	Affymetrix [93095623] (imputed)	N
823	chr6	31262780	31262781	rs2524147	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs2524147-G	0.814	8E-65				Affymetrix [10369434] (imputed)	N
823	chr6	31263509	31263510	rs2524143	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs2524143-C	0.736	2E-52	(Killer cell immunoglobulin-like receptor 2DS2, KIR2DS2.10428.1.3)	0.43	[0.37-0.49] unit decrease	Affymetrix [10572788] (imputed)	N
823	chr6	31263521	31263522	rs2524142	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	6p21.33		rs2524142-C	0.299755	1E-8		0.0256476	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
823	chr6	31263521	31263522	rs2524142	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	6p21.33		rs2524142-C	0.299755	8E-10		0.02748	[0.019-0.036] unit decrease	NR [11722792] (imputed)	N
823	chr6	31263521	31263522	rs2524142	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs2524142-G	0.734	3E-22	(cAMP-specific 3',5'-cyclic phosphodiesterase 4D, PDE4D.5255.22.3)	0.28	[0.22-0.34] unit increase	Affymetrix [10572788] (imputed)	N
823	chr6	31263750	31263751	rs2894207	27436580	Cui Q	2016-07-19	Hum Mol Genet	An extended genome-wide association study identifies novel susceptibility loci for nasopharyngeal carcinoma.	Nasopharyngeal carcinoma	1,583 Southern Chinese ancestry cases, 2,979 Southern Chinese ancestry controls	5,463 Southern Chinese ancestry cases, 5,591 Southern Chinese ancestry controls	6p21.33	NR	rs2894207-?	0.84	2E-19		1.96	[1.69-2.27]	Illumina [463250]	N
823	chr6	31263750	31263751	rs2894207	20512145	Bei JX	2010-05-30	Nat Genet	A genome-wide association study of nasopharyngeal carcinoma identifies three new susceptibility loci.	Nasopharyngeal carcinoma	1,583 Chinese ancestry cases, 1,894 Chinese ancestry controls	3,507 Chinese ancestry cases, 3,063 Chinese ancestry controls, 284  Chinese ancestry trios	6p21.33	HLA-C, HLA-B	rs2894207-?	0.82	3E-33		1.64	[1.52-1.75]	Illumina [464328]	N
823	chr6	31263800	31263801	rs114583506	33483693	Clements CC	2021-01-22	Mol Psychiatry	Genome-wide association study of patients with a severe major depressive episode treated with electroconvulsive therapy.	Major depressive episode treated with electroconvulsive therapy	2,725 European ancestry cases, 3,290 European ancestry controls	NA	6p21.33	HLA-C	rs114583506-?	NR	4E-8		0.5992	[0.42-0.78]	Illumina [NR] (imputed)	N
823	chr6	31263800	31263801	rs114583506	33483693	Clements CC	2021-01-22	Mol Psychiatry	Genome-wide association study of patients with a severe major depressive episode treated with electroconvulsive therapy.	Major depressive disorder and major depressive episode treated with electroconvulsive therapy	1,796 European ancestry cases, 3,290 European ancestry controls	NA	6p21.33	HLA-C	rs114583506-?	NR	1E-7		0.5845	[0.39-0.78]	Illumina [NR] (imputed)	N
823	chr6	31264132	31264133	rs2524139	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	XXbac-BPG248L24.13	rs2524139-C	0.734	2E-52	(Killer cell immunoglobulin-like receptor 2DS2, KIR2DS2.10428.1.3)	0.43	[0.37-0.49] unit decrease	Affymetrix [10572788] (imputed)	N
823	chr6	31264391	31264392	rs9380237	32558222	Okamura K	2020-06-18	Pigment Cell Melanoma Res	Genome-wide association study identifies CDH13 as a susceptibility gene for rhododendrol-induced leukoderma.	Leukoderma in response to rhododendrol	147 Japanese ancestry cases, 112 Japanese ancestry controls	NA	6p21.33	HLA-B, HLA-C	rs9380237-?	NR	8E-6		3.5714285	[1.96-6.25]	Illumina [1057565]	N
823	chr6	31264460	31264461	rs3094682	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	6p21.33	NR	rs3094682-C	0.8056	2E-23		0.0598	[0.048-0.072] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
823	chr6	31265122	31265123	rs55745121	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	6p21.33	XXbac-BPG248L24.13	rs55745121-C	0.00771999999999995	2E-12		0.103537746	[0.075-0.132] unit increase	Affymetrix [93095623] (imputed)	N
823	chr6	31265134	31265135	rs2524129	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2524129-C	0.298408	4E-18		0.0377033	[0.029-0.046] unit decrease	NR [11722792] (imputed)	N
823	chr6	31265134	31265135	rs2524129	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small LDL	115,082 European ancestry individuals	NA	6p21.33		rs2524129-C	0.298408	2E-16		0.0359658	[0.027-0.045] unit decrease	NR [11722792] (imputed)	N
823	chr6	31265134	31265135	rs2524129	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2524129-C	0.298408	5E-15		0.0341259	[0.026-0.043] unit decrease	NR [11722792] (imputed)	N
823	chr6	31265134	31265135	rs2524129	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium LDL	115,082 European ancestry individuals	NA	6p21.33		rs2524129-C	0.298408	5E-17		0.036788	[0.028-0.045] unit decrease	NR [11722792] (imputed)	N
823	chr6	31265134	31265135	rs2524129	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2524129-C	0.298408	3E-14		0.0327886	[0.024-0.041] unit decrease	NR [11722792] (imputed)	N
823	chr6	31265134	31265135	rs2524129	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total triglycerides levels	115,082 European ancestry individuals	NA	6p21.33		rs2524129-C	0.298408	3E-15		0.0342705	[0.026-0.043] unit decrease	NR [11722792] (imputed)	N
823	chr6	31265134	31265135	rs2524129	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2524129-C	0.298408	2E-11		0.0290519	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
823	chr6	31265261	31265262	rs2246954	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.13	rs2246954-A	NR	2E-8		0.0159083	[0.01-0.021] unit decrease	Affymetrix [321114] (imputed)	N
823	chr6	31265261	31265262	rs2246954	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.13	rs2246954-A	NR	1E-9		0.0195845	[0.013-0.026] unit increase	Affymetrix [323858] (imputed)	N
823	chr6	31265489	31265490	rs2247056	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-3 fatty acid levels	115,006 European ancestry individuals	NA	6p21.33		rs2247056-T	0.296693	2E-16		0.0356403	[0.027-0.044] unit decrease	NR [11722792] (imputed)	N
823	chr6	31265489	31265490	rs2247056	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2247056-T	0.296684	6E-12		0.0298649	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
823	chr6	31265489	31265490	rs2247056	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.33	NR	rs2247056-T	NR	2E-14		0.034	unit decrease	Affymetrix [at least 7091467] (imputed)	N
823	chr6	31265489	31265490	rs2247056	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.33	NR	rs2247056-T	0.249	1E-12	(EA)	0.034	unit decrease	Affymetrix [at least 7091467] (imputed)	N
823	chr6	31265489	31265490	rs2247056	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.33	NR	rs2247056-T	NR	2E-18		0.043	unit decrease	Affymetrix [at least 7091467] (imputed)	N
823	chr6	31265489	31265490	rs2247056	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.33	NR	rs2247056-T	0.249	2E-17	(EA)	0.045	unit decrease	Affymetrix [at least 7091467] (imputed)	N
823	chr6	31265489	31265490	rs2247056	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.33	NR	rs2247056-T	NR	2E-8		0.028	unit decrease	Affymetrix [at least 7091467] (imputed)	N
823	chr6	31265489	31265490	rs2247056	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.33	NR	rs2247056-T	0.249	6E-8	(EA)	0.029	unit decrease	Affymetrix [at least 7091467] (imputed)	N
823	chr6	31265489	31265490	rs2247056	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	6p21.33	HLA-C, HLA-B	rs2247056-T	0.27	4E-12		1.18	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
823	chr6	31265489	31265490	rs2247056	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	Triglycerides	96,598 European ancestry individuals	NA	6p21.33	HLA	rs2247056-T	0.25	2E-15		2.99	[2.17-3.81] mg/dL decrease	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
823	chr6	31265736	31265737	rs2853923	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.13	rs2853923-G	NR	4E-8		0.0175506	[0.011-0.024] unit decrease	Affymetrix [323858] (imputed)	N
823	chr6	31266040	31266041	rs17192526	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.13	rs17192526-C	NR	1E-9		0.0195758	[0.013-0.026] unit increase	Affymetrix [323858] (imputed)	N
823	chr6	31266040	31266041	rs17192526	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.13	rs17192526-C	NR	8E-9		0.0185107	[0.012-0.025] unit increase	Affymetrix [127266] (imputed)	N
823	chr6	31266040	31266041	rs17192526	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.13	rs17192526-C	NR	2E-18		0.0275913	[0.021-0.034] unit decrease	Affymetrix [323123] (imputed)	N
823	chr6	31266089	31266090	rs4406273	26626624	Stuart PE	2015-11-28	Am J Hum Genet	Genome-wide Association Analysis of Psoriatic Arthritis and Cutaneous Psoriasis Reveals Differences in Their Genetic Architecture.	Psoriasis vulgaris	4,007 European ancestry cases, 4,934 European ancestry controls	up to 9,075 European ancestry cases, up to European ancestry 12,726 controls	6p21.33	HLA-B, HLA-C	rs4406273-A	NR	2E-312		3.38	NR	Illumina [up to 11532644] (imputed)	N
823	chr6	31266089	31266090	rs4406273	23143594	Tsoi LC	2012-12-01	Nat Genet	Identification of 15 new psoriasis susceptibility loci highlights the role of innate immunity.	Psoriasis	10,588 European ancestry cases, 22,806 European ancestry controls	NA	6p21.33	HLA-B, HLA-C	rs4406273-A	0.092	5E-723		4.32		Illumina [111236] (imputed)	N
823	chr6	31266116	31266117	rs2524095	31879980	German CA	2019-12-26	Genet Epidemiol	Ordered multinomial regression for genetic association analysis of ordinal phenotypes at Biobank scale.	Hypertension	30,822 British ancestry normal blood pressure individuals, 25,242 British ancestry elevated blood pressure individuals, 50,461 British ancestry stage 1 hypertension individuals, 75,286 British ancestry stage 2 hypertension individuals, 3,754 British ancestry hypertension crisis individuals	NA	6p21.33	LINC02571	rs2524095-?	NR	1E-9		0.03838402	NR unit increase	Affymetrix [464137]	N
823	chr6	31267935	31267936	rs28367631	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	WASF5P, HLA-C, XXbac-BPG248L24.10, USP8P1, RPL3P2, XXbac-BPG248L24.13	rs28367631-T	0.3457286	1E-15	(EA, MHC class I polypeptide-related sequence A)	0.3635	[0.28-0.45] unit decrease	Affymetrix [509946]	N
823	chr6	31268113	31268114	rs2524046	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.13	rs2524046-T	NR	1E-10		0.0223645	[0.016-0.029] unit increase	Affymetrix [319769] (imputed)	N
823	chr6	31268114	31268115	rs2524045	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.13	rs2524045-G	NR	7E-11		0.022607	[0.016-0.029] unit increase	Affymetrix [319769] (imputed)	N
823	chr6	31268641	31268642	rs28367657	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.13	rs28367657-A	NR	1E-12		0.0243391	[0.018-0.031] unit decrease	Affymetrix [323123] (imputed)	N
823	chr6	31269172	31269173	rs9366778	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR		HLA-C	rs9366778-G	0.626619	3E-11		0.018043	[0.013-0.023] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
823	chr6	31269485	31269486	rs2844592	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gastric polyp	6,155 European ancestry cases, 341,871 European ancestry controls, 1,337 East Asian ancestry cases, 158,249 East Asian ancestry controls	NA	6p21.33		rs2844592-G	NR	4E-8		0.0998	[0.064-0.135] unit increase	Affymetrix, Illumina [20456140] (imputed)	N
823	chr6	31269692	31269693	rs114985235	26891255	Jung ES	2016-02-18	Inflamm Bowel Dis	HLA-C*01 is a Risk Factor for Crohn's Disease.	Crohn's disease	275 Korean ancestry cases, 2,369 Korean ancestry controls	242 Korean ancestry cases, 1,066 Korean ancestry controls	6p21.33	HLA-B, HLA-C	rs114985235-C	0.12	9E-23		2.25	[1.91-2.66]	Affymetrix [3387207] (imputed)	N
823	chr6	31269945	31269946	rs12211087	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Depression	at least 5,919 European ancestry cases, at least 130,691 European ancestry controls	634,037 European ancestry cases, 1,308,690 European ancestry controls	6p21.33	XXbac, BPG248L24.13	rs12211087-T	0.09841	2E-6		0.018283794	[0.0097-0.0269] unit decrease	NR [9417325] (imputed)	N
823	chr6	31270183	31270184	rs9468939	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.13	rs9468939-C	NR	6E-9		0.0177651	[0.012-0.024] unit decrease	Affymetrix [321016] (imputed)	N
823	chr6	31270356	31270357	rs9264798	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p21.33		rs9264798-C	0.826	9E-36				Affymetrix [10369434] (imputed)	N
823	chr6	31270404	31270405	rs9264801	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.33		rs9264801-C	0.826	5E-63				Affymetrix [10369434] (imputed)	N
823	chr6	31270797	31270798	rs142628781	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.33		rs142628781-T	0.070905	3E-14		1.080437	[1.06-1.1]	Affymetrix, Illumina [9851866] (imputed)	N
823	chr6	31271075	31271076	rs9264845	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs9264845-C	0.258	3E-16	(MHC class I polypeptide-related sequence B, MICB.5102.55.3)	0.26	[0.2-0.32] unit decrease	Affymetrix [10572788] (imputed)	N
823	chr6	31271566	31271567	rs7750963	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large VLDL	115,082 European ancestry individuals	NA	6p21.33		rs7750963-A	0.298149	7E-13		0.0308157	[0.022-0.039] unit decrease	NR [11722792] (imputed)	N
823	chr6	31271566	31271567	rs7750963	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large VLDL	115,082 European ancestry individuals	NA	6p21.33		rs7750963-A	0.298149	3E-12		0.0302555	[0.022-0.039] unit decrease	NR [11722792] (imputed)	N
823	chr6	31271566	31271567	rs7750963	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6p21.33		rs7750963-A	0.298149	7E-9		0.0250346	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
823	chr6	31271566	31271567	rs7750963	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs7750963-G	0.882	8E-43	(Killer cell immunoglobulin-like receptor 2DS2, KIR2DS2.10428.1.3)	0.59	[0.51-0.67] unit decrease	Affymetrix [10572788] (imputed)	N
823	chr6	31271715	31271716	rs9461688	18464913	Melzer D	2008-05-09	PLoS Genet	A genome-wide association study identifies protein quantitative trait loci (pQTLs).	Protein quantitative trait loci	1,200 European ancestry individuals	up to 4,590 European ancestry individuals	6p21.33	HLA-C	rs9461688-?	0.31	4E-6	(IL18)			Illumina [496032]	N
823	chr6	31271734	31271735	rs9264875	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Lectin-like oxidized LDL receptor 1 levels	21,758 European ancestry individuals	9,173 individuals	6p21.33		rs9264875-C	0.12	2E-9		0.092	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
823	chr6	31272200	31272201	rs556990455	32534018	Liu X	2020-06-10	Brain Behav Immun	Genetic factors underlying the bidirectional relationship between autoimmune and mental disorders - findings from a Danish population-based study.	Autoimmune traits	1,383 Danish ancestry cases, 62,656 Danish ancestry controls	NA	6p21.33	NR	rs556990455-T	0.016	7E-11		2.23	[1.79-2.77]	NR [7721839] (imputed)	N
823	chr6	31272260	31272261	rs6457374	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs6457374-T	0.753	2E-34	(MHC class I polypeptide-related sequence B, MICB.5102.55.3)	0.39	[0.33-0.45] unit increase	Affymetrix [10572788] (imputed)	N
823	chr6	31272260	31272261	rs6457374	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	6p21.33	HLA-C	rs6457374-T	0.73	8E-35		0.041	[0.035-0.047] unit decrease	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
823	chr6	31272320	31272321	rs9368677	23042114	Hirota T	2012-10-07	Nat Genet	Genome-wide association study identifies eight new susceptibility loci for atopic dermatitis in the Japanese population.	Atopic dermatitis	1,472 Japanese ancestry cases, 7,971 Japanese ancestry controls	1,856 Japanese ancestry cases, 7,021 Japanese ancestry controls	6p21.33	HLA-C	rs9368677-G	0.798	1E-17		1.36	[1.27-1.46]	Illumina [606164]	N
823	chr6	31272552	31272553	rs9264904	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.33		rs9264904-G	0.739	4E-158				Affymetrix [10369434] (imputed)	N
823	chr6	31272552	31272553	rs9264904	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.10	rs9264904-A	NR	3E-11		0.0214122	[0.015-0.028] unit increase	Affymetrix [319769] (imputed)	N
823	chr6	31272552	31272553	rs9264904	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.10	rs9264904-A	NR	8E-11		0.0209999	[0.015-0.027] unit increase	Affymetrix [319769] (imputed)	N
823	chr6	31272552	31272553	rs9264904	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.10	rs9264904-A	NR	8E-9		0.0188102	[0.012-0.025] unit increase	Affymetrix [321169] (imputed)	N
823	chr6	31272552	31272553	rs9264904	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	6p21.33	XXbac-BPG248L24.13	rs9264904-A	0.260825	6E-13		0.019344117	[0.014-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
823	chr6	31272552	31272553	rs9264904	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	6p21.33	NR	rs9264904-A	0.262119	3E-387		0.091059	[0.087-0.095] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
823	chr6	31273496	31273497	rs2508008	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p21.33	NR	rs2508008-G	0.119	3E-6	(IFNAR2_of_CD8p_T)			Illumina [5084123] (imputed)	N
823	chr6	31273744	31273745	rs3873386	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.10	rs3873386-C	NR	9E-11		0.0189406	[0.013-0.025] unit decrease	Affymetrix [321016] (imputed)	N
823	chr6	31274026	31274027	rs1634761	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.10	rs1634761-T	NR	6E-12		0.0193034	[0.014-0.025] unit decrease	Affymetrix [321016] (imputed)	N
823	chr6	31274026	31274027	rs1634761	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.10	rs1634761-T	NR	1E-13		0.0211552	[0.016-0.027] unit increase	Affymetrix [321169] (imputed)	N
823	chr6	31274297	31274298	rs9264941	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	6p21.33	XXbac-BPG248L24.13	rs9264941-A	0.167	6E-44		0.066809	[0.057-0.076] unit increase	Affymetrix [~ 2500000] (imputed)	N
823	chr6	31274379	31274380	rs9264942	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	6p21.33	NR	rs9264942-?	NR	5E-25	(EA)			Affymetrix, Illumina [~ 9000000] (imputed)	N
823	chr6	31274379	31274380	rs9264942	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Crohn's disease	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls	6p21.33	PSORS1C1, NFKBIL1, HLA-C, MICB	rs9264942-C	0.378	5E-28		1.145	[1.107-1.184]	Affymetrix, Illumina [1230000] (imputed)	N
823	chr6	31274379	31274380	rs9264942	21051598	Pereyra F	2010-11-04	Science	The major genetic determinants of HIV-1 control affect HLA class I peptide presentation.	HIV-1 control	516 European cases, 1,196 European controls, 341 African American cases, 892 African American controls, 117 Hispanic cases, 560 Hispanic controls	NA	6p21.33	HLA-C	rs9264942-C	0.34	3E-35	(EA)	2.9	[NR]	Illumina [1384048] (imputed)	N
823	chr6	31274379	31274380	rs9264942	20041166	Fellay J	2009-12-24	PLoS Genet	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	6p21.33	HLA-C	rs9264942-C	0.412	6E-32	(setpoint)	5.3	[NR] % increase	Illumina [NR]	N
823	chr6	31274379	31274380	rs9264942	20041166	Fellay J	2009-12-24	PLoS Genet	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	6p21.33	HLA-C	rs9264942-?	NR	6E-12	(progression)			Illumina [NR]	N
823	chr6	31274554	31274555	rs10484554	33385400	Patrick MT	2020-12-29	J Invest Dermatol	Causal relationship and shared genetic loci between psoriasis and type 2 diabetes through trans-disease meta-analysis.	Psoriasis or type 2 diabetes (trans-disease meta-analysis)(opposite effect)	11,024 European ancestry psoriasis cases, 74,124 European ancestry diabetes cases, 840,342 European ancestry controls	NA	6p21.33	NR	rs10484554-T		2E-302		1.67		NR [8016731] (imputed)	N
823	chr6	31274554	31274555	rs10484554	26626624	Stuart PE	2015-11-28	Am J Hum Genet	Genome-wide Association Analysis of Psoriatic Arthritis and Cutaneous Psoriasis Reveals Differences in Their Genetic Architecture.	Cutaneous psoriasis	1,363 European ancestry cases, 4,934 European ancestry controls	up to 2,969 European ancestry cases, up to European ancestry 14,384 controls	6p21.33	HLA, HLA-C	rs10484554-T	NR	4E-207		3.304	NR	Illumina [11532644] (imputed)	N
823	chr6	31274554	31274555	rs10484554	20953190	Strange A	2010-10-17	Nat Genet	A genome-wide association study identifies new psoriasis susceptibility loci and an interaction between HLA-C and ERAP1.	Psoriasis	2,178 European ancestry cases, 5,175 European ancestry controls	3,174 European ancestry cases, 5,464 European ancestry controls	6p21.33	HLA-C	rs10484554-?	NR	4E-214		4.66	[4.23-5.13]	Illumina [535475]	N
823	chr6	31274554	31274555	rs10484554	19115949	Limou S	2009-01-01	J Infect Dis	Genomewide association study of an AIDS-nonprogression cohort emphasizes the role played by HLA genes (ANRS Genomewide Association Study 02).	AIDS progression	275 European ancestry seropositive non-progressors, 86 European ancestry seropositive rapid progressors, 1,352 European ancestry seronegative controls	(see Fellay 2007)	6p21.33	HLA-C	rs10484554-T	0.13	6E-8				Illumina [291119]	N
823	chr6	31274554	31274555	rs10484554	18369459	Liu Y	2008-04-04	PLoS Genet	A genome-wide association study of psoriasis and psoriatic arthritis identifies new disease loci.	Psoriasis	218 European ancestry cases, 519 European ancestry controls	1,153 European ancestry cases, 1,217 European ancestry controls	6p21.33	HLA-C	rs10484554-T	0.15	2E-39		2.8	[2.40-3.30]	Illumina [305983]	N
823	chr6	31274585	31274586	rs9348865	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.10	rs9348865-G	NR	4E-10		0.0204625	[0.014-0.027] unit increase	Affymetrix [323858] (imputed)	N
823	chr6	31274585	31274586	rs9348865	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.10	rs9348865-G	NR	3E-9		0.0194694	[0.013-0.026] unit increase	Affymetrix [127266] (imputed)	N
823	chr6	31274585	31274586	rs9348865	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6p21.33	XXbac-BPG248L24.10	rs9348865-G	0.351828	2E-14		0.024740536	[0.018-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
823	chr6	31274626	31274627	rs9264945	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	6p21.33	XXbac-BPG248L24.10	rs9264945-A	0.133478	2E-29		0.0345332	[0.028-0.041] unit increase	Affymetrix [93095623] (imputed)	N
823	chr6	31274692	31274693	rs3094691	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.10	rs3094691-A	NR	1E-9		0.0192715	[0.013-0.025] unit increase	Affymetrix [323858] (imputed)	N
823	chr6	31274692	31274693	rs3094691	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.10	rs3094691-A	NR	2E-8		0.0178577	[0.012-0.024] unit increase	Affymetrix [127266] (imputed)	N
823	chr6	31274692	31274693	rs3094691	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.10	rs3094691-A	NR	4E-15		0.0225202	[0.017-0.028] unit increase	Affymetrix [321169] (imputed)	N
823	chr6	31274751	31274752	rs3132479	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.10	rs3132479-G	NR	2E-12		0.019918	[0.014-0.025] unit decrease	Affymetrix [321016] (imputed)	N
823	chr6	31274751	31274752	rs3132479	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.10	rs3132479-G	NR	3E-14		0.0234978	[0.017-0.03] unit decrease	Affymetrix [323123] (imputed)	N
823	chr6	31274751	31274752	rs3132479	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	6p21.33	XXbac-BPG248L24.10	rs3132479-A	0.5388	2E-7		0.0369	[0.023-0.051] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
823	chr6	31274751	31274752	rs3132479	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Perceived unattractiveness to mosquitoes	16,576 European ancestry individuals	NA	6p21.33	HLA-C, MICA	rs3132479-G	0.466	6E-7		0.11555	[0.07-0.161] unit decrease	Illumina [7433384] (imputed)	N
823	chr6	31274793	31274793	rs540653847	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6p21.33	XXbac-BPG248L24.10	rs540653847-GC	0.00672899999999999	3E-18		0.12216329	[0.095-0.15] unit increase	Affymetrix [93095623] (imputed)	N
823	chr6	31274793	31274793	rs540653847	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	6p21.33	XXbac-BPG248L24.10	rs540653847-GC	0.0064	8E-9		0.1328338	[0.088-0.178] unit increase	Affymetrix [~ 2500000] (imputed)	N
823	chr6	31274793	31274793	rs540653847	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	6p21.33	XXbac-BPG248L24.10	rs540653847-GC	0.0064	6E-10		0.1418412	[0.097-0.187] unit increase	Affymetrix [~ 2500000] (imputed)	N
823	chr6	31274818	31274818	rs5875308	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.33	XXbac-BPG248L24.10	rs5875308-CA	0.2653	7E-6		0.0365	[0.021-0.052] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
823	chr6	31275662	31275663	rs3873387	29532581	Hallfors J	2018-03-13	Addict Biol	Genome-wide association study in Finnish twins highlights the connection between nicotine addiction and neurotrophin signaling pathway.	Smoking behaviour (maximum cigarettes in a 24 hour period)	1,711 Finnish ancestry ever smoker individuals from up to 739 families	NA	6p21.33	NR	rs3873387-A	0.24743	1E-6		2.706126	[1.61-3.80] unit decrease	Illumina [9469131] (imputed)	N
823	chr6	31275826	31275827	rs3873388	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.10	rs3873388-G	NR	8E-10		0.0213529	[0.015-0.028] unit decrease	Affymetrix [323123] (imputed)	N
823	chr6	31276313	31276314	rs1634794	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.33	Intergenic	rs1634794-T	NR	7E-10	(women)	0.0287016	[0.02-0.038] unit decrease	Illumina [13520550] (imputed)	N
823	chr6	31276434	31276435	rs9264962	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.33	Intergenic	rs9264962-G	NR	8E-13		0.0264842	[0.019-0.034] unit increase	Illumina [13520550] (imputed)	N
823	chr6	31276446	31276447	rs1005599	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small HDL	115,082 European ancestry individuals	NA	6p21.33		rs1005599-G	0.289198	3E-16		0.0361878	[0.028-0.045] unit decrease	NR [11722792] (imputed)	N
823	chr6	31276446	31276447	rs1005599	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium HDL	115,082 European ancestry individuals	NA	6p21.33		rs1005599-G	0.289198	5E-16		0.0364668	[0.028-0.045] unit decrease	NR [11722792] (imputed)	N
823	chr6	31276446	31276447	rs1005599	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in HDL	115,082 European ancestry individuals	NA	6p21.33		rs1005599-G	0.289198	2E-15		0.0354759	[0.027-0.044] unit decrease	NR [11722792] (imputed)	N
823	chr6	31276446	31276447	rs1005599	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small HDL	115,082 European ancestry individuals	NA	6p21.33		rs1005599-G	0.289198	1E-19		0.0413294	[0.032-0.05] unit decrease	NR [11722792] (imputed)	N
823	chr6	31276446	31276447	rs1005599	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total fatty acid levels	115,006 European ancestry individuals	NA	6p21.33		rs1005599-G	0.289208	7E-21		0.0423272	[0.033-0.051] unit decrease	NR [11722792] (imputed)	N
823	chr6	31276446	31276447	rs1005599	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Saturated fatty acid levels	115,006 European ancestry individuals	NA	6p21.33		rs1005599-G	0.289208	7E-16		0.0364401	[0.028-0.045] unit decrease	NR [11722792] (imputed)	N
823	chr6	31276446	31276447	rs1005599	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small HDL	115,082 European ancestry individuals	NA	6p21.33		rs1005599-G	0.289198	8E-20		0.0413457	[0.032-0.05] unit decrease	NR [11722792] (imputed)	N
823	chr6	31276446	31276447	rs1005599	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Monounsaturated fatty acid levels	115,006 European ancestry individuals	NA	6p21.33		rs1005599-G	0.289208	4E-19		0.040361	[0.032-0.049] unit decrease	NR [11722792] (imputed)	N
823	chr6	31276446	31276447	rs1005599	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycoprotein acetyls levels	115,082 European ancestry individuals	NA	6p21.33		rs1005599-G	0.289198	4E-32		0.0533982	[0.045-0.062] unit decrease	NR [11722792] (imputed)	N
823	chr6	31276776	31276777	rs1634791	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total free cholesterol levels	115,082 European ancestry individuals	NA	6p21.33		rs1634791-A	0.450407	2E-10		0.0263105	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
823	chr6	31276776	31276777	rs1634791	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total esterified cholesterol levels	115,082 European ancestry individuals	NA	6p21.33		rs1634791-A	0.450407	6E-11		0.0267294	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
823	chr6	31276776	31276777	rs1634791	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol levels	115,082 European ancestry individuals	NA	6p21.33		rs1634791-A	0.450407	7E-11		0.0267605	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
823	chr6	31276776	31276777	rs1634791	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Sphingomyelin levels	115,006 European ancestry individuals	NA	6p21.33		rs1634791-A	0.450416	2E-11		0.0265776	[0.019-0.034] unit decrease	NR [11722792] (imputed)	N
823	chr6	31276776	31276777	rs1634791	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in LDL	115,082 European ancestry individuals	NA	6p21.33		rs1634791-A	0.450407	7E-10		0.0260256	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
823	chr6	31276776	31276777	rs1634791	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	6p21.33	NR	rs1634791-A	0.455909	8E-23		0.011832	[0.0093-0.0143] unit increase	Affymetrix [16585854] (imputed)	N
823	chr6	31276776	31276777	rs1634791	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	6p21.33	NR	rs1634791-A	0.455909	1E-12		0.0102161	[0.0074-0.0131] unit increase	Affymetrix [16585866] (imputed)	N
823	chr6	31280217	31280218	rs117298325	30498034	Terao C	2018-11-29	Proc Natl Acad Sci U S A	Genetic determinants and an epistasis of LILRA3 and HLA-B*52 in Takayasu arteritis.	Takayasu arteritis	411 Japanese ancestry cases, 2,158 Japanese ancestry controls	219 Japanese ancestry cases, 3,770 Japanese ancestry controls	6p21.33	HLA-B	rs117298325-C	NR	4E-34				Illumina [5878075] (imputed)	N
823	chr6	31283603	31283604	rs1634783	31738830	McGraw KL	2019-11-01	Blood Adv	Non-del(5q) myelodysplastic syndromes-associated loci detected by SNP-array genome-wide association meta-analysis.	Non-del(5q) myelodysplastic syndromes	907 European ancestry cases, 5,605 European ancestry controls	NA	6p21.33	intergenic	rs1634783-G	0.5	8E-7		1.3157895	[1.19-1.49]	Affymetrix [7515136] (imputed)	N
823	chr6	31284066	31284067	rs1634738	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs1634738-A	0.276	1E-14	(alpha-2-macroglobulin receptor-associated protein, LRPAP1.8829.4.3)	0.22	[0.16-0.28] unit increase	Affymetrix [10572788] (imputed)	N
823	chr6	31286058	31286059	rs28367727	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	6p21.33	NR	rs28367727-G	0.229348	1E-9		0.0520093	[0.035-0.069] unit decrease	Affymetrix [17914406] (imputed)	N
823	chr6	31287453	31287454	rs9265113	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	6p21.33		rs9265113-C	0.592366	4E-13		0.0285779	[0.021-0.036] unit increase	NR [11722792] (imputed)	N
823	chr6	31287453	31287454	rs9265113	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large HDL	115,082 European ancestry individuals	NA	6p21.33		rs9265113-C	0.592366	3E-13		0.0287846	[0.021-0.037] unit increase	NR [11722792] (imputed)	N
823	chr6	31287453	31287454	rs9265113	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	6p21.33		rs9265113-C	0.592366	2E-12		0.0277589	[0.02-0.035] unit increase	NR [11722792] (imputed)	N
823	chr6	31287453	31287454	rs9265113	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	6p21.33		rs9265113-C	0.592366	8E-13		0.0281895	[0.02-0.036] unit increase	NR [11722792] (imputed)	N
823	chr6	31287453	31287454	rs9265113	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	6p21.33		rs9265113-C	0.592366	2E-12		0.0281201	[0.02-0.036] unit increase	NR [11722792] (imputed)	N
823	chr6	31287453	31287454	rs9265113	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	6p21.33		rs9265113-C	0.592366	3E-13		0.0295629	[0.022-0.037] unit increase	NR [11722792] (imputed)	N
823	chr6	31287453	31287454	rs9265113	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	6p21.33		rs9265113-C	0.592366	1E-12		0.0281506	[0.02-0.036] unit increase	NR [11722792] (imputed)	N
823	chr6	31287453	31287454	rs9265113	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	6p21.33		rs9265113-C	0.592366	1E-11		0.0270795	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
823	chr6	31287983	31287984	rs9265143	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p21.33	NR	rs9265143-A	0.408	6E-6	(IFNalpha_STAT1_of_CD4p_T)			Illumina [5084123] (imputed)	N
823	chr6	31288192	31288193	rs4445093	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (vasodilators used in cardiac diseases)	5,546 European ancestry cases, 237,113 European ancestry controls, 17,050 East Asian ancestry cases, 161,676 East Asian ancestry controls	NA	6p21.33		rs4445093-T	NR	3E-8		0.0768	[0.05-0.104] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
823	chr6	31288813	31288814	rs9265153	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Angiopoietin-1 receptor levels	21,758 European ancestry individuals	9,173 individuals	6p21.33		rs9265153-C	0.37	1E-10		0.0638	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
823	chr6	31288876	31288877	rs7748141	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PDIA5	5,366 Icelandic ancestry individuals	NA	6p21.33		rs7748141-C	0.07983	2E-47		0.504487	[0.44-0.57] unit increase	Illumina [7506463] (imputed)	N
823	chr6	31294289	31294290	rs142174523	31594949	Nievergelt CM	2019-10-08	Nat Commun	International meta-analysis of PTSD genome-wide association studies identifies sex- and ancestry-specific genetic risk loci.	Post-traumatic stress disorder	23,212 European ancestry cases, 4,363 African ancestry cases, 1,981 Latino and Native American ancestry cases, 151,447 European ancestry controls, 10,976 African ancestry controls, 3,722 Latino and Native American ancestry controls	NA	6p21.33	NR	rs142174523-G	NR	4E-8	(African, male)	1.3157895	[1.19-1.45]	Affymetrix, Illumina [~ 1175791] (imputed)	N
823	chr6	31294911	31294912	rs117309887	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PCSK7	5,355 Icelandic ancestry individuals	NA	6p21.33		rs117309887-T	0.09768	2E-14		0.238034	[0.18-0.3] unit increase	Illumina [7506463] (imputed)	N
823	chr6	31296368	31296369	rs116576188	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs116576188-C	0.116	2E-22	(Ubiquitin carboxyl-terminal hydrolase 25, USP25.9215.117.3)	0.38	[0.3-0.46] unit increase	Affymetrix [10572788] (imputed)	N
823	chr6	31296387	31296388	rs114046333	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p21.33	NR	rs114046333-?	NR	1E-14		0.2802	[0.21-0.35] unit decrease	Illumina [at least 560000] (imputed)	N
823	chr6	31296408	31296409	rs3094685	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DNAJC10	5,351 Icelandic ancestry individuals	NA	6p21.33		rs3094685-T	0.2128	3E-35		0.266011	[0.22-0.31] unit increase	Illumina [7506463] (imputed)	N
823	chr6	31296533	31296534	rs3130703	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 23)	2,187 European ancestry individuals	NA	6p21.33	NR	rs3130703-C	0.2795	4E-7		0.1707	[0.1-0.24] unit increase	Illumina [10677593] (imputed)	N
823	chr6	31297579	31297580	rs9265503	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs9265503-T	0.342	4E-28	(MHC class I polypeptide-related sequence B, MICB.5102.55.3)	0.31	[0.25-0.37] unit decrease	Affymetrix [10572788] (imputed)	N
823	chr6	31297618	31297619	rs9405068	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atopic dermatitis	6,224 European ancestry cases, 475,075 European ancestry controls, 4,296 East Asian ancestry cases, 163,807 East Asian ancestry controls	NA	6p21.33		rs9405068-T	NR	1E-13		0.2372	[0.17-0.3] unit decrease	Affymetrix, Illumina [25843389] (imputed)	N
823	chr6	31297771	31297772	rs9265517	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.10	rs9265517-C	NR	8E-10		0.0206019	[0.014-0.027] unit decrease	Affymetrix [319769] (imputed)	N
823	chr6	31297771	31297772	rs9265517	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.10	rs9265517-C	NR	2E-9		0.0202233	[0.014-0.027] unit decrease	Affymetrix [319769] (imputed)	N
823	chr6	31298141	31298142	rs111797167	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on unswitched memory B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs111797167-G	0.07168	7E-9		0.4094	[0.27-0.55] unit increase	Illumina [18238311] (imputed)	N
823	chr6	31298141	31298142	rs111797167	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on IgD+ CD24+ B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs111797167-G	0.07168	1E-8		0.4014	[0.26-0.54] unit increase	Illumina [18238311] (imputed)	N
823	chr6	31298365	31298366	rs9265559	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	HDL cholesterol levels	115,082 European ancestry individuals	NA	6p21.33		rs9265559-C	0.649153	2E-13		0.0287989	[0.021-0.036] unit increase	NR [11722792] (imputed)	N
823	chr6	31298365	31298366	rs9265559	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in HDL	115,082 European ancestry individuals	NA	6p21.33		rs9265559-C	0.649153	2E-13		0.0284805	[0.021-0.036] unit increase	NR [11722792] (imputed)	N
823	chr6	31298420	31298421	rs28752857	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs28752857-?		5E-8		1.06	[1.04-1.08]	Illumina [7645193] (imputed)	N
823	chr6	31298537	31298537	rs530257728	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	6p21.33	intergenic	rs530257728-GAAATAAAGCAGATTT	0.0801	5E-21		0.06499605	[0.051-0.079] unit increase	Affymetrix [~ 2500000] (imputed)	N
823	chr6	31298546	31298547	rs28895001	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.33		rs28895001-T	0.163489	8E-27		0.045384236	[0.037-0.054] unit decrease	Affymetrix [93095623] (imputed)	N
823	chr6	31299103	31299104	rs7772894	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on memory B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs7772894-T	0.10721	3E-9		0.2956	[0.2-0.39] unit increase	Illumina [18238311] (imputed)	N
823	chr6	31299103	31299104	rs7772894	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on CD24+ CD27+ B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs7772894-T	0.10721	3E-9		0.2945	[0.2-0.39] unit increase	Illumina [18238311] (imputed)	N
823	chr6	31299465	31299466	rs17192757	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling miserable	376,097 European ancestry individuals	NA	6p21.33	PSORS1C1	rs17192757-A	0.132647	5E-8		5.46	z score increase	NR [10847151] (imputed)	N
823	chr6	31299497	31299497	rs111743557	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-B	rs111743557-TTG	NR	5E-9		0.0221507	[0.015-0.03] unit decrease	Affymetrix [323858] (imputed)	N
823	chr6	31299497	31299497	rs111743557	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HLA-B	rs111743557-TTG	NR	2E-8		0.0212612	[0.014-0.029] unit decrease	Affymetrix [127266] (imputed)	N
823	chr6	31299497	31299497	rs111743557	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.33	NR	rs111743557-T	0.888	2E-18	(conditional)	0.729	[0.66-0.8]	Illumina [11270530] (imputed)	N
823	chr6	31299684	31299685	rs9265620	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	6p21.33		rs9265620-T	0.629786	1E-11		0.0263927	[0.019-0.034] unit decrease	NR [11722792] (imputed)	N
823	chr6	31299684	31299685	rs9265620	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	6p21.33		rs9265620-T	0.629787	7E-13		0.0279211	[0.02-0.036] unit increase	NR [11722792] (imputed)	N
823	chr6	31300285	31300286	rs6902116	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	6p21.33	HLA-B	rs6902116-A	0.677972	2E-40		0.0274179	[0.023-0.031] unit increase	Affymetrix [NR] (imputed)	N
823	chr6	31300818	31300819	rs12212594	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Psoriasis vulgaris	5,072 European ancestry cases, 478,102 European ancestry controls, 206 East Asian ancestry cases, 172,289 East Asian ancestry controls	NA	6p21.33		rs12212594-C	NR	5E-209		1.4454	[1.35-1.54] unit increase	Affymetrix, Illumina [25844455] (imputed)	N
823	chr6	31301335	31301336	rs6908001	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	6p21.33		rs6908001-C	NR	4E-36		0.0278	[0.023-0.032] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
823	chr6	31301635	31301636	rs28752871	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	76 Han Chinese ancestry cases, 889 Han Chinese ancestry controls	NA	6p21.33	HLA-B	rs28752871-?	NR	5E-8	(conditional on rs12110437 and rs1264697)			Illumina [3403929] (imputed)	N
823	chr6	31302524	31302525	rs9265742	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CPXM1	5,363 Icelandic ancestry individuals	NA	6p21.33		rs9265742-A	0.2045	4E-12		0.162501	[0.12-0.21] unit decrease	Illumina [7506463] (imputed)	N
823	chr6	31302641	31302642	rs11968046	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	6p21.33		rs11968046-C	0.772833	5E-11		0.0309702	[0.022-0.04] unit decrease	NR [11722792] (imputed)	N
823	chr6	31302641	31302642	rs11968046	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	6p21.33		rs11968046-C	0.772833	2E-10		0.0301683	[0.021-0.04] unit decrease	NR [11722792] (imputed)	N
823	chr6	31302641	31302642	rs11968046	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	6p21.33		rs11968046-C	0.772833	2E-10		0.030047	[0.021-0.039] unit decrease	NR [11722792] (imputed)	N
823	chr6	31302641	31302642	rs11968046	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Triglyceride levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	6p21.33	HLA-C, HLA-B	rs11968046-?		2E-11		0.0605	[0.043-0.078] unit decrease	Illumina [31500000] (imputed)	N
823	chr6	31302717	31302718	rs9265745	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.33		rs9265745-A	0.591	7E-36				Affymetrix [10369434] (imputed)	N
823	chr6	31303274	31303275	rs1634774	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.33		rs1634774-A	0.68	1E-34				Affymetrix [10369434] (imputed)	N
823	chr6	31303278	31303279	rs28752890	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs28752890-A	NR	2E-12		0.0210684	[0.015-0.027] unit increase	Affymetrix [319769] (imputed)	N
823	chr6	31303278	31303279	rs28752890	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs28752890-A	NR	1E-11		0.0202141	[0.014-0.026] unit increase	Affymetrix [319769] (imputed)	N
823	chr6	31303278	31303279	rs28752890	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs28752890-A	NR	4E-11		0.0198841	[0.014-0.026] unit increase	Affymetrix [321169] (imputed)	N
823	chr6	31303323	31303324	rs114444221	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	6p21.33	HLA-B	rs114444221-?	NR	9E-18		1.133	[1.1-1.16]	Affymetrix [9000000] (imputed)	N
823	chr6	31303323	31303324	rs114444221	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	6p21.33	HLA-B	rs114444221-A	NR	9E-16		1.134	[1.1-1.17]	Affymetrix [9000000] (imputed)	N
823	chr6	31303878	31303879	rs28752923	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6p21.33		rs28752923-?	NR	4E-10		0.9344	[0.91-0.96]	NR [685523]	N
823	chr6	31303921	31303922	rs28752924	34454985	Sliz E	2021-08-26	J Allergy Clin Immunol	Uniting biobank resources reveals novel genetic pathways modulating susceptibility for atopic dermatitis.	Atopic dermatitis	22,474 European ancestry cases, 774,187 European ancestry controls	NA	6p21.33	NR	rs28752924-t	0.6336	5E-11		1.1	[1.07-1.14]	Affymetrix, Illumina [16201029] (imputed)	N
823	chr6	31304290	31304291	rs28752936	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs28752936-A	NR	5E-11		0.0187215	[0.013-0.024] unit increase	Affymetrix [321169] (imputed)	N
823	chr6	31304394	31304395	rs1634769	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p21.33	NR	rs1634769-A	0.649245	2E-13		0.026251458	[0.019-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
823	chr6	31304487	31304488	rs380852	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6p21.33	NR	rs380852-T	0.05472	7E-15		1.107	[1.08-1.135]	Affymetrix [15688218] (imputed)	N
823	chr6	31304631	31304632	rs28752949	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs28752949-A	NR	3E-9		0.0170482	[0.011-0.023] unit decrease	Affymetrix [321016] (imputed)	N
823	chr6	31305640	31305641	rs1631951	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p21.33	NR	rs1631951-T	0.18	4E-12		1.15	[1.11-1.2]	Affymetrix [9886854] (imputed)	N
823	chr6	31305640	31305641	rs1631951	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p21.33	NR	rs1631951-T	0.18	6E-17			[NR]	Affymetrix [9886854] (imputed)	N
823	chr6	31305640	31305641	rs1631951	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p21.33	NR	rs1631951-T	0.18	2E-15		1.13	[1.1-1.16]	Affymetrix [9886854] (imputed)	N
823	chr6	31305640	31305641	rs1631951	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p21.33	NR	rs1631951-T	0.18	3E-16			[NR]	Affymetrix [9886854] (imputed)	N
823	chr6	31305640	31305641	rs1631951	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in non-current smokers	16,488 European ancestry cases, 169,688 European ancestry controls	NA	6p21.33	NR	rs1631951-T	0.18	2E-15		1.13	[1.1-1.16]	Affymetrix [9886854] (imputed)	N
823	chr6	31305640	31305641	rs1631951	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in never smokers	8,631 European ancestry cases, 120,544 European ancestry controls	NA	6p21.33	NR	rs1631951-T	0.18	3E-12		1.15	[1.11-1.2]	Affymetrix [9886854] (imputed)	N
823	chr6	31305640	31305641	rs1631951	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in ever smokers	12,446 European ancestry cases, 59,145 European ancestry controls	NA	6p21.33	NR	rs1631951-T	0.18	4E-7		1.1	[1.06-1.14]	Affymetrix [9886854] (imputed)	N
823	chr6	31305730	31305731	rs28367832	32004448	Savage SA	2020-01-30	Am J Hum Genet	Genome-wide Association Study Identifies HLA-DPB1 as a Significant Risk Factor for Severe Aplastic Anemia.	Severe aplastic anemia	359 European ancestry cases, 1,396 European ancestry controls	175 European ancestry cases, 1,059 European ancestry controls	6p21.33	HLA-B	rs28367832-?	NR	7E-9		1.49	[1.22-1.78]	Illumina [688067]	N
823	chr6	31306419	31306420	rs1625792	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Help-seeking from a GP	113,262 British ancestry cases, 219,360 British ancestry controls	NA	6p21.33	NR	rs1625792-G	0.853	5E-8		1.0405828	[1.03-1.05]	NR [5276842] (imputed)	N
823	chr6	31306419	31306420	rs1625792	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p21.33	NR	rs1625792-?	NR	1E-7		5.298	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
823	chr6	31308861	31308862	rs1622406	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	HLA-B, HLA-C, XXbac-BPG248L24.12, MICB, USP8P1, RPL3P2, MIR6891, PPIAP9, XXbac-BPG16N22.5	rs1622406-T	0.03009027	7E-63	(EA, Alpha-2-macroglobulin receptor-associated protein)	2.011	[1.79-2.23] unit increase	Affymetrix [509946]	N
823	chr6	31309256	31309257	rs34872474	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.33		rs34872474-G	0.0764200000000001	2E-15		0.042707935	[0.032-0.053] unit decrease	Affymetrix [93095623] (imputed)	N
823	chr6	31309442	31309443	rs113021938	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	6p21.33		rs113021938-G	0.027345	2E-14		0.052308656	[0.039-0.066] unit decrease	Affymetrix [93095623] (imputed)	N
823	chr6	31311210	31311211	rs2854011	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.33		rs2854011-G	0.848	4E-80				Affymetrix [10369434] (imputed)	N
823	chr6	31311210	31311211	rs2854011	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p21.33		rs2854011-G	0.848	4E-55				Affymetrix [10369434] (imputed)	N
823	chr6	31311294	31311295	rs28380833	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs28380833-?		8E-9		1.8	[1.47-2.20]	Illumina [7645193] (imputed)	N
823	chr6	31311354	31311355	rs9265828	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6p21.33		rs9265828-G	0.569472	1E-13		0.026239738	[0.019-0.033] unit increase	Affymetrix [93095623] (imputed)	N
823	chr6	31311375	31311376	rs9265830	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs9265830-A	NR	5E-28		0.0333407	[0.027-0.039] unit decrease	Affymetrix [319769] (imputed)	N
823	chr6	31311375	31311376	rs9265830	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs9265830-A	NR	3E-26		0.0322127	[0.026-0.038] unit decrease	Affymetrix [319769] (imputed)	N
823	chr6	31311375	31311376	rs9265830	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs9265830-A	NR	1E-8		0.0174211	[0.011-0.023] unit decrease	Affymetrix [321114] (imputed)	N
823	chr6	31311375	31311376	rs9265830	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs9265830-A	NR	4E-25		0.0318177	[0.026-0.038] unit decrease	Affymetrix [321169] (imputed)	N
823	chr6	31311911	31311912	rs2394976	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to omega-3 fatty acids	115,006 European ancestry individuals	NA	6p21.33		rs2394976-G	0.838358	5E-9		0.0315075	[0.021-0.042] unit decrease	NR [11722792] (imputed)	N
823	chr6	31312057	31312058	rs2394977	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-B	rs2394977-G	NR	2E-12		0.0222252	[0.016-0.028] unit increase	Affymetrix [323858] (imputed)	N
823	chr6	31312057	31312058	rs2394977	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HLA-B	rs2394977-G	NR	4E-11		0.0207721	[0.015-0.027] unit increase	Affymetrix [127266] (imputed)	N
823	chr6	31312057	31312058	rs2394977	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-B	rs2394977-G	NR	6E-20		0.028162	[0.022-0.034] unit decrease	Affymetrix [323123] (imputed)	N
823	chr6	31312058	31312059	rs2256752	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	6p21.33	intergenic	rs2256752-C	0.3515	2E-13		0.02753249	[0.02-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
823	chr6	31312292	31312293	rs4521636	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-B	rs4521636-T	NR	2E-9		0.0186949	[0.013-0.025] unit decrease	Affymetrix [323858] (imputed)	N
823	chr6	31312292	31312293	rs4521636	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HLA-B	rs4521636-T	NR	2E-8		0.0174949	[0.011-0.024] unit decrease	Affymetrix [127266] (imputed)	N
823	chr6	31312292	31312293	rs4521636	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-B	rs4521636-T	NR	2E-16		0.0251493	[0.019-0.031] unit increase	Affymetrix [323123] (imputed)	N
823	chr6	31312325	31312326	rs3134792	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.33	intergenic	rs3134792-C	0.114	6E-72		3.93	[NR]	Illumina [242824]	N
823	chr6	31312325	31312326	rs3134792	18364390	Capon F	2008-03-25	Hum Mol Genet	Identification of ZNF313/RNF114 as a novel psoriasis susceptibility gene.	Psoriasis	318 European ancestry cases, 288 European ancestry controls	2,361 European ancestry cases, 1,927 European ancestry controls	6p21.33	HLA-C	rs3134792-?	NR	1E-9				Illumina [~ 408000]	N
823	chr6	31312537	31312538	rs2854008	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p21.33	NR	rs2854008-A	0.274988	5E-92				Affymetrix, Illumina [24332387] (imputed)	N
823	chr6	31312537	31312538	rs2854008	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	6p21.33	NR	rs2854008-A	0.293344	2E-97		0.04242	[0.038-0.046] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
823	chr6	31313029	31313030	rs2394982	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	6p21.33	intergenic	rs2394982-T	0.3056	8E-9		0.02209588	[0.015-0.03] unit increase	Affymetrix [~ 2500000] (imputed)	N
823	chr6	31313032	31313033	rs9265878	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs9265878-G	0.732	2E-102				Affymetrix [10369434] (imputed)	N
823	chr6	31313219	31313220	rs9265885	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	120,539 East Asian ancestry individuals	NA	6p21.33		rs9265885-C	0.425161	1E-20		0.0356702	[0.028-0.043] unit decrease	Illumina [13474682] (imputed)	N
823	chr6	31313257	31313258	rs9265888	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs9265888-T	NR	2E-8		0.0163341	[0.011-0.022] unit increase	Affymetrix [319769] (imputed)	N
823	chr6	31313468	31313469	rs9265902	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.33		rs9265902-G	0.721	5E-33				Affymetrix [10369434] (imputed)	N
823	chr6	31313468	31313469	rs9265902	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-B	rs9265902-A	NR	1E-9		0.0207461	[0.014-0.027] unit decrease	Affymetrix [323123] (imputed)	N
823	chr6	31313468	31313469	rs9265902	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs9265902-A	NR	1E-8		0.0181136	[0.012-0.024] unit increase	Affymetrix [321169] (imputed)	N
823	chr6	31313601	31313602	rs9265906	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-B	rs9265906-C	NR	5E-8		0.0168982	[0.011-0.023] unit decrease	Affymetrix [323123] (imputed)	N
823	chr6	31313601	31313602	rs9265906	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs9265906-C	NR	4E-8		0.0157447	[0.01-0.021] unit increase	Affymetrix [321169] (imputed)	N
823	chr6	31314065	31314066	rs12175330	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-B	rs12175330-T	NR	1E-13		0.0240282	[0.018-0.03] unit decrease	Affymetrix [323123] (imputed)	N
823	chr6	31314065	31314066	rs12175330	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs12175330-T	NR	1E-8		0.0170347	[0.011-0.023] unit increase	Affymetrix [321169] (imputed)	N
823	chr6	31314105	31314106	rs3016018	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.33		rs3016018-C	NR	2E-14		1.132	[1.097-1.169]	Affymetrix [7846216] (imputed)	N
823	chr6	31314645	31314646	rs2507999	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Keratinocyte cancer (MTAG)	at least 18,538 European ancestry cases, at least 340,302 European ancestry controls	NA	6p21.33	HLA-B	rs2507999-A	0.328281	1E-10		1.0638298	[1.04-1.08]	Affymetrix [7600000] (imputed)	N
823	chr6	31315032	31315033	rs9265940	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs9265940-G	NR	3E-19		0.0271089	[0.021-0.033] unit increase	Affymetrix [321016] (imputed)	N
823	chr6	31315057	31315058	rs9265942	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	6p21.33		rs9265942-C	0.871684	4E-12		0.0455219	[0.033-0.058] unit decrease	NR [11722792] (imputed)	N
823	chr6	31315099	31315099	rs150481781	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	6p21.33		rs150481781-AGAGCTTCCCAATTGCT	NR	1E-30		0.0258	[0.021-0.03] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
823	chr6	31315219	31315220	rs28771425	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	CX3CL1 levels	21,758 European ancestry individuals	9,173 individuals	6p21.33		rs28771425-A	0.43	5E-19		0.099	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
823	chr6	31315338	31315339	rs9265954	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	6p21.33	HLA-B	rs9265954-T	0.0497	2E-18		0.0604	[0.047-0.074] unit increase	Affymetrix [18391927] (imputed)	N
823	chr6	31315362	31315363	rs9265956	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.33		rs9265956-T	0.324	2E-45				Affymetrix [10369434] (imputed)	N
823	chr6	31315407	31315407	rs111721712	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6p21.33		rs111721712-C	0.530439	2E-12		0.0293352	[0.021-0.037] unit increase	NR [11722792] (imputed)	N
823	chr6	31315407	31315407	rs111721712	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6p21.33		rs111721712-C	0.530439	1E-12		0.0294594	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
823	chr6	31315407	31315407	rs111721712	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	6p21.33		rs111721712-C	0.534	9E-42		0.15	[0.13-0.17] % increase	Affymetrix [NR] (imputed)	N
823	chr6	31315407	31315407	rs111721712	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs111721712-CT	NR	8E-10		0.0174035	[0.012-0.023] unit decrease	Affymetrix [321016] (imputed)	N
823	chr6	31315407	31315407	rs111721712	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	6p21.33	intergenic	rs111721712-CT	0.4708	1E-26		0.03814722	[0.031-0.045] unit increase	Affymetrix [~ 2500000] (imputed)	N
823	chr6	31315511	31315512	rs116685461	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	6p21.33	MHC	rs116685461-G	0.8755	3E-6		1.06	[1.04-1.09]	Affymetrix, Illumina [16900397] (imputed)	N
823	chr6	31315511	31315512	rs116685461	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	6p21.33	intergenic	rs116685461-A	0.098	5E-11		0.04047215	[0.028-0.053] unit decrease	Affymetrix [~ 2500000] (imputed)	N
823	chr6	31315628	31315629	rs9265965	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium HDL	115,082 European ancestry individuals	NA	6p21.33		rs9265965-T	0.867699	1E-14		0.0453236	[0.034-0.057] unit increase	NR [11722792] (imputed)	N
823	chr6	31315647	31315648	rs2523625	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Body fat percentage variance	341,632 European ancestry individuals	NA	6p21.33	HLA-B	rs2523625-?	NR	3E-10				NR [5554549] (imputed)	N
823	chr6	31315662	31315663	rs9265968	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	6p21.33	HLA-B	rs9265968-A	0.866272	1E-21		0.0201268	[0.016-0.024] unit decrease	Affymetrix [12370749]	N
823	chr6	31316459	31316460	rs116438126	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	6p21.33	intergenic	rs116438126-T	0.0084	6E-18		0.1721088	[0.13-0.21] unit increase	Affymetrix [~ 2500000] (imputed)	N
823	chr6	31316570	31316571	rs200291258	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atopic dermatitis	4,296 East Asian ancestry cases, 163,807 East Asian ancestry controls	NA	6p21.33		rs200291258-A	0.179174296	6E-15		0.25656497	[0.19-0.32] unit decrease	Illumina [13428180] (imputed)	N
823	chr6	31316759	31316760	rs5014819	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs5014819-T	NR	3E-15		0.0226584	[0.017-0.028] unit decrease	Affymetrix [321016] (imputed)	N
823	chr6	31316910	31316911	rs2923008	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in diabetes	70,762 European ancestry individuals, 20,967 African American individuals	NA	6p21.33	HLA-B	rs2923008-T	0.106	2E-12		1.017	[0.73-1.3] unit decrease	Affymetrix [NR] (imputed)	N
823	chr6	31318578	31318579	rs34213790	28062682	Carr DF	2017-01-05	J Antimicrob Chemother	Genome-wide association study of nevirapine hypersensitivity in a sub-Saharan African HIV-infected population.	Nevirapine-induced hypersensitivity in HIV	151 Sub-saharan African ancestry cases, 182 Sub-saharan African ancestry controls	62 Sub-Saharan African ancestry cases, 60 Sub-Saharan African ancestry controls	6p21.33	HLA-B	rs34213790-A	0.37	7E-7		2.06	[1.55-2.74]	Illumina [14218511] (imputed)	N
823	chr6	31318629	31318630	rs9266043	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-B	rs9266043-A	NR	8E-29		0.035895	[0.03-0.042] unit increase	Affymetrix [323123] (imputed)	N
823	chr6	31318784	31318785	rs2596505	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p21.33	NR	rs2596505-T	0.1681	1E-8		0.009	[0.0059-0.0121] unit decrease	NR [7666894] (imputed)	N
823	chr6	31318971	31318972	rs9391774	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	6p21.33	HLA-B	rs9391774-A	0.070171	8E-17		0.03854895	[0.029-0.048] unit decrease	Affymetrix [93095623] (imputed)	N
823	chr6	31319078	31319079	rs73728881	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.33		rs73728881-C	0.408	8E-101				Affymetrix [10369434] (imputed)	N
823	chr6	31319156	31319157	rs2442730	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	6p21.33	HLA-B	rs2442730-A	0.723193	2E-43		0.03767923	[0.032-0.043] unit decrease	Affymetrix [93095623] (imputed)	N
823	chr6	31319221	31319222	rs9266059	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs9266059-C	NR	7E-15		0.0219789	[0.016-0.028] unit decrease	Affymetrix [319769] (imputed)	N
823	chr6	31319221	31319222	rs9266059	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs9266059-C	NR	1E-13		0.0210357	[0.015-0.027] unit decrease	Affymetrix [319769] (imputed)	N
823	chr6	31319221	31319222	rs9266059	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs9266059-C	NR	3E-12		0.0197526	[0.014-0.025] unit increase	Affymetrix [321016] (imputed)	N
823	chr6	31319221	31319222	rs9266059	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-B	rs9266059-C	NR	2E-12		0.0216682	[0.016-0.028] unit increase	Affymetrix [323123] (imputed)	N
823	chr6	31319221	31319222	rs9266059	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs9266059-C	NR	3E-12		0.0199124	[0.014-0.026] unit decrease	Affymetrix [321169] (imputed)	N
823	chr6	31319390	31319391	rs9266063	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs9266063-A	NR	1E-9		0.017108	[0.012-0.023] unit increase	Affymetrix [321016] (imputed)	N
823	chr6	31319396	31319397	rs34429926	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	6p21.33	HLA-C, HLA-B	rs34429926-?	NR	3E-29		0.04099494	[0.034-0.048] unit increase	Illumina [27896057] (imputed)	N
823	chr6	31319488	31319489	rs9405083	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-B	rs9405083-T	NR	5E-10		0.0221393	[0.015-0.029] unit decrease	Affymetrix [323123] (imputed)	N
823	chr6	31319585	31319586	rs4644106	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs4644106-C	NR	9E-14		0.0259517	[0.019-0.033] unit decrease	Affymetrix [319769] (imputed)	N
823	chr6	31319585	31319586	rs4644106	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs4644106-C	NR	9E-14		0.0259699	[0.019-0.033] unit decrease	Affymetrix [319769] (imputed)	N
823	chr6	31319585	31319586	rs4644106	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-B	rs4644106-C	NR	5E-10		0.0235741	[0.016-0.031] unit increase	Affymetrix [323123] (imputed)	N
823	chr6	31319602	31319603	rs28380929	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pneumonia	7,423 East Asian ancestry cases, 171,303 East Asian ancestry controls	NA	6p21.33		rs28380929-T	0.015924804	5E-22		0.70876914	[0.56-0.85] unit increase	Illumina [13429980] (imputed)	N
823	chr6	31319878	31319879	rs9266077	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p21.33	XXbac-BPG248L24.12	rs9266077-G	0.149984	4E-50		0.05959745	[0.052-0.067] unit increase	Affymetrix [93095623] (imputed)	N
823	chr6	31319895	31319896	rs2442725	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs2442725-T	NR	5E-8		0.0167286	[0.011-0.023] unit decrease	Affymetrix [319769] (imputed)	N
823	chr6	31319895	31319896	rs2442725	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs2442725-T	NR	4E-8		0.0167925	[0.011-0.023] unit decrease	Affymetrix [319769] (imputed)	N
823	chr6	31319922	31319923	rs36057735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium HDL	115,082 European ancestry individuals	NA	6p21.33		rs36057735-C	0.80097	9E-14		0.0357792	[0.026-0.045] unit increase	NR [11722792] (imputed)	N
823	chr6	31319922	31319923	rs36057735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in HDL	115,082 European ancestry individuals	NA	6p21.33		rs36057735-C	0.80097	8E-14		0.0346386	[0.026-0.044] unit increase	NR [11722792] (imputed)	N
823	chr6	31319922	31319923	rs36057735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in HDL	115,082 European ancestry individuals	NA	6p21.33		rs36057735-C	0.80097	2E-13		0.0344232	[0.025-0.044] unit increase	NR [11722792] (imputed)	N
823	chr6	31319922	31319923	rs36057735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	6p21.33		rs36057735-C	0.80097	5E-14		0.035387	[0.026-0.045] unit increase	NR [11722792] (imputed)	N
823	chr6	31319922	31319923	rs36057735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium HDL particles	115,082 European ancestry individuals	NA	6p21.33		rs36057735-C	0.80097	9E-14		0.0354958	[0.026-0.045] unit increase	NR [11722792] (imputed)	N
823	chr6	31319922	31319923	rs36057735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium HDL	115,082 European ancestry individuals	NA	6p21.33		rs36057735-C	0.80097	3E-12		0.0333993	[0.024-0.043] unit increase	NR [11722792] (imputed)	N
823	chr6	31319922	31319923	rs36057735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	6p21.33		rs36057735-C	0.80097	9E-13		0.0339999	[0.025-0.043] unit increase	NR [11722792] (imputed)	N
823	chr6	31319922	31319923	rs36057735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein A1 levels	115,082 European ancestry individuals	NA	6p21.33		rs36057735-C	0.80097	4E-14		0.0357836	[0.027-0.045] unit increase	NR [11722792] (imputed)	N
823	chr6	31319922	31319923	rs36057735	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	6p21.33	HLA-B	rs36057735-C	0.800848	3E-35		0.0304388	[0.026-0.035] unit increase	Affymetrix [NR] (imputed)	N
823	chr6	31319922	31319923	rs36057735	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling nervous	373,121 European ancestry individuals	NA	6p21.33	NR	rs36057735-C	0.195566	1E-8		5.69	z score increase	NR [10847151] (imputed)	N
823	chr6	31319922	31319923	rs36057735	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.33	C6orf15, CCHCR1, CDSN, HCG22, HCG26, HCG27, HCP5, HLA-B, HLA-C, MICA, MIR6891, POU5F1, PSORS1C1, PSORS1C2, PSORS1C3, TCF19	rs36057735-C		2E-12		1.1	[1.07-1.13]	Affymetrix, Illumina [NR]	N
823	chr6	31320308	31320309	rs2507993	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large HDL	115,082 European ancestry individuals	NA	6p21.33		rs2507993-C	0.51967	4E-10		0.0257964	[0.018-0.034] unit increase	NR [11722792] (imputed)	N
823	chr6	31320308	31320309	rs2507993	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large HDL	115,082 European ancestry individuals	NA	6p21.33		rs2507993-C	0.51967	2E-9		0.0247775	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
823	chr6	31320308	31320309	rs2507993	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large HDL particles	115,082 European ancestry individuals	NA	6p21.33		rs2507993-C	0.51967	9E-10		0.0253075	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
823	chr6	31320308	31320309	rs2507993	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	6p21.33		rs2507993-C	0.51967	4E-11		0.0271386	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
823	chr6	31320308	31320309	rs2507993	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	6p21.33		rs2507993-C	0.51967	4E-11		0.0272976	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
823	chr6	31320508	31320509	rs9266089	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Chickenpox	107,769 European ancestry cases, 15,982 European ancestry controls	NA	6p21.33	HLA-B	rs9266089-G	0.85	1E-10		1.12	[1.1-1.14]	Illumina [at least 560000] (imputed)	N
823	chr6	31320537	31320538	rs2442719	26039976	Wei Z	2015-06-17	Sci Rep	Genome-Wide Association Studies of HIV-1 Host Control in Ethnically Diverse Chinese Populations.	HIV-1 viral setpoint	326 Han Chinese ancestry cases, 58 Dai Chinese ancestry cases, 40 Jingpo Chinese ancestry cases, 83 Uygur Chinese ancestry cases, 11 Hui Chinese ancestry cases, 20 East Asian cases	NA	6p21.33	HLA-C, HLA-B	rs2442719-A	0.4161	8E-7	(Han)	0.3298	unit decrease	Illumina [up to 528294]	N
823	chr6	31320561	31320562	rs2523616	30850646	Tziotzios C	2019-03-08	Nat Commun	Genome-wide association study in frontal fibrosing alopecia identifies four susceptibility loci including HLA-B*07:02.	Frontal fibrosing alopecia	1,016 European ancestry cases, 4,145 European ancestry controls		6p21.33	HLA-B	rs2523616-T	0.19	8E-119		4.73	[4.15-5.39]	Illumina [~ 8000000] (imputed)	N
823	chr6	31320620	31320621	rs117598591	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	20,917 European ancestry cases, 440,906 European ancestry controls, 14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	6p21.33		rs117598591-A	NR	3E-20		0.2416	[0.19-0.29] unit increase	Affymetrix, Illumina [25841367] (imputed)	N
823	chr6	31320644	31320645	rs11753309	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Non-albumin protein levels	98,538 Japanese ancestry individuals	NA	6p21.33	HLA-C, HLA-B	rs11753309-?	NR	1E-12		0.07675	[0.056-0.098] unit increase novel	Illumina [6108953] (imputed)	N
823	chr6	31320644	31320645	rs11753309	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Albumin-globulin ratio	98,626 Japanese ancestry individuals	NA	6p21.33	HLA-C, HLA-B	rs11753309-?	NR	4E-14		0.08157	[0.06-0.103] unit decrease novel	Illumina [6108953] (imputed)	N
823	chr6	31320653	31320654	rs2523614	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Naive CD4-CD8- T cell %T cell	3,427 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs2523614-C	0.26364	6E-9		0.1522	[0.1-0.2] unit decrease	Illumina [18349913] (imputed)	N
823	chr6	31320653	31320654	rs2523614	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	6p21.33	HLA-C, MICA	rs2523614-T	0.689	6E-10		0.0237097	[0.016-0.031] unit increase	Illumina [13519193] (imputed)	N
823	chr6	31320653	31320654	rs2523614	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.33	HLA-C, MICA	rs2523614-T	0.689	2E-7	(men)	0.0253993	[0.016-0.035] unit increase	Illumina [13520550] (imputed)	N
823	chr6	31320661	31320662	rs62396264	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs62396264-G	NR	1E-8		0.042766	[0.028-0.057] unit decrease	Affymetrix [321016] (imputed)	N
823	chr6	31320848	31320849	rs35735140	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	6p21.33	XXbac-BPG248L24.12	rs35735140-C	0.0632	9E-33		0.08825474	[0.074-0.103] unit increase	Affymetrix [~ 2500000] (imputed)	N
823	chr6	31320870	31320870	rs35506574	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs35506574-CTGA	NR	6E-13		0.0203427	[0.015-0.026] unit increase	Affymetrix [319769] (imputed)	N
823	chr6	31320870	31320870	rs35506574	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-B	rs35506574-CTGA	NR	6E-10		0.0194754	[0.013-0.026] unit increase	Affymetrix [323858] (imputed)	N
823	chr6	31320870	31320870	rs35506574	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs35506574-CTGA	NR	2E-12		0.0198288	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
823	chr6	31320870	31320870	rs35506574	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HLA-B	rs35506574-CTGA	NR	6E-9		0.0183276	[0.012-0.024] unit increase	Affymetrix [127266] (imputed)	N
823	chr6	31320870	31320870	rs35506574	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs35506574-CTGA	NR	2E-15		0.0226739	[0.017-0.028] unit increase	Affymetrix [321169] (imputed)	N
823	chr6	31321210	31321211	rs2596501	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs2596501-T	NR	2E-16		0.0231594	[0.018-0.029] unit increase	Affymetrix [319769] (imputed)	N
823	chr6	31321210	31321211	rs2596501	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs2596501-T	NR	3E-15		0.0222583	[0.017-0.028] unit increase	Affymetrix [319769] (imputed)	N
823	chr6	31321210	31321211	rs2596501	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs2596501-T	NR	7E-10		0.0173579	[0.012-0.023] unit decrease	Affymetrix [321016] (imputed)	N
823	chr6	31321210	31321211	rs2596501	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-B	rs2596501-T	NR	5E-11		0.0201678	[0.014-0.026] unit decrease	Affymetrix [323123] (imputed)	N
823	chr6	31321210	31321211	rs2596501	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs2596501-T	NR	1E-14		0.0219866	[0.016-0.028] unit increase	Affymetrix [321169] (imputed)	N
823	chr6	31321266	31321267	rs2596500	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in ever smokers	23,223 European ancestry cases,  16,964 European ancestry controls	NA	6p21.33	HLA-B	rs2596500-C	0.110809826	2E-15		1.2094321	[1.153908741-1.267627282]	Illumina [10439017] (imputed)	N
823	chr6	31321266	31321267	rs2596500	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	6p21.33	NR	rs2596500-A	NR	8E-20		1.18	[NR]	Illumina [7158791] (imputed)	N
823	chr6	31321326	31321327	rs9266095	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs9266095-G	NR	1E-9		0.0211771	[0.014-0.028] unit decrease	Affymetrix [321016] (imputed)	N
823	chr6	31321406	31321407	rs12196740	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.33	NR	rs12196740-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
823	chr6	31321424	31321425	rs9378247	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-B	rs9378247-A	NR	3E-11		0.0265014	[0.019-0.034] unit decrease	Affymetrix [323123] (imputed)	N
823	chr6	31321523	31321524	rs2844584	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	6p21.33	NR	rs2844584-?	NR	2E-21	(conditional)			Affymetrix [15688218] (imputed)	N
823	chr6	31321656	31321657	rs3177747	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PRSS57	5,358 Icelandic ancestry individuals	NA	6p21.33		rs3177747-A	0.01609	7E-71		1.26085	[1.12-1.4] unit increase	Illumina [7506463] (imputed)	N
823	chr6	31321855	31321856	rs2768	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs2768-G	NR	2E-10		0.0206722	[0.014-0.027] unit increase	Affymetrix [319769] (imputed)	N
823	chr6	31321855	31321856	rs2768	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-B	rs2768-G	NR	4E-8		0.0196291	[0.013-0.027] unit increase	Affymetrix [323858] (imputed)	N
823	chr6	31321855	31321856	rs2768	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs2768-G	NR	9E-11		0.0209572	[0.015-0.027] unit increase	Affymetrix [319769] (imputed)	N
823	chr6	31321855	31321856	rs2768	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs2768-G	NR	5E-9		0.0190456	[0.013-0.025] unit increase	Affymetrix [321114] (imputed)	N
823	chr6	31321855	31321856	rs2768	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs2768-G	NR	5E-12		0.0225379	[0.016-0.029] unit increase	Affymetrix [321169] (imputed)	N
823	chr6	31321905	31321906	rs1093	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (age of onset)	37,846 British ancestry individuals	NA	6p21.33	NR	rs1093-G	0.212	8E-10		0.994	[0.68-1.31] unit decrease	Affymetrix [10894596] (imputed)	N
823	chr6	31321914	31321915	rs1055890	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs1055890-G	NR	2E-10		0.0184831	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
823	chr6	31321914	31321915	rs1055890	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs1055890-G	NR	4E-10		0.0182582	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
823	chr6	31321914	31321915	rs1055890	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs1055890-G	NR	3E-12		0.0206002	[0.015-0.026] unit increase	Affymetrix [321169] (imputed)	N
823	chr6	31321918	31321919	rs1055821	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Strep throat	52,487 European ancestry cases, 22,017 European ancestry controls	NA	6p21.33	HLA-B	rs1055821-T	0.06	8E-11		0.08	[0.06-0.09] unit increase	Illumina [at least 560000] (imputed)	N
823	chr6	31321947	31321948	rs1055348	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	6p21.33	HLA-B	rs1055348-G	0.107	3E-22		0.05609307	[0.045-0.067] unit decrease	Affymetrix [~ 2500000] (imputed)	N
823	chr6	31322128	31322129	rs17192932	30946743	Li Z	2019-04-04	PLoS Genet	Genome-wide association study in Turkish and Iranian populations identify rare familial Mediterranean fever gene (MEFV) polymorphisms associated with ankylosing spondylitis.	Ankylosing spondylitis	921 Turkish ancestry cases, 907 Turkish ancestry controls, 422 Iranian ancestry cases, 754 Iranian ancestry controls	NA	6p21.33	NR	rs17192932-?	NR	6E-120	(Turkish)	22.84	[17.55-29.72]	Illumina [up to 294091]	N
823	chr6	31322132	31322133	rs3819306	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-B	rs3819306-G	NR	3E-9		0.0189605	[0.013-0.025] unit decrease	Affymetrix [323123] (imputed)	N
823	chr6	31322132	31322133	rs3819306	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count (basophil)	171,846 European ancestry individuals	NA	6p21.33	HLA-B	rs3819306-G	0.3663	8E-23		0.03592633	[0.029-0.043] unit increase	Affymetrix [~ 2500000] (imputed)	N
823	chr6	31322143	31322144	rs3819305	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs3819305-G	NR	2E-10		0.0235724	[0.016-0.031] unit decrease	Affymetrix [321016] (imputed)	N
823	chr6	31322196	31322197	rs2428494	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	6p21.33	ABHD16A, AIF1, APOM, ATP6V1G2, ATP6V1G2-DDX39B, BAG6, C6orf25, C6orf47, CCHCR1, CLIC1, CSNK2B, DDAH2, DDX39B, GPANK1, HCG26, HCG27, HCP5, HLA-B, HLA-C, LST1, LTA, LTB, LY6G5B, LY6G5C, LY6G6C, LY6G6D, LY6G6E, LY6G6F, MCCD1, MICA, MICB, MIR4646, MIR6832, MIR6891, MSH5, MSH5-SAPCD1, NCR3, NFKBIL1, POU5F1, PRRC2A, PSORS1C1, PSORS1C2, PSORS1C3, SAPCD1, SNORA38, SNORD84, SNORD117, TCF19, TNF, VWA7	rs2428494-A	0.476146	2E-14		1.0680295	[1.05-1.09]	Affymetrix [8274727] (imputed)	N
823	chr6	31322196	31322197	rs2428494	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (childhood onset)	9,433 British ancestry cases, 318,237 British ancestry controls	NA	6p21.33	HLA-B, HLA-C, MICA	rs2428494-A	0.477	8E-23		1.157	[1.124-1.191]	Affymetrix [10894596] (imputed)	N
823	chr6	31322196	31322197	rs2428494	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (adult onset)	21,564 British ancestry cases, 318,237 British ancestry controls	NA	6p21.33	HLA-B, HLA-C, MICA	rs2428494-A	0.477	5E-23		1.104	[1.082-1.126]	Affymetrix [10894596] (imputed)	N
823	chr6	31322196	31322197	rs2428494	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	6p21.33	HLA-B	rs2428494-A	NR	2E-60		1.118	[1.1-1.13]	Affymetrix [9000000] (imputed)	N
823	chr6	31322196	31322197	rs2428494	30643255	Kristjansson RP	2019-01-14	Nat Genet	A loss-of-function variant in ALOX15 protects against nasal polyps and chronic rhinosinusitis.	Nasal polyps	86 European ancestry whole-genome sequenced cases, 4,280 European ancestry cases, 13,941 European ancestry whole-genome sequenced controls, 700,740 European ancestry controls	NA	6p21.33	HLA-B	rs2428494-A	NR	5E-7		1.12	[1.07-1.17]	Affymetrix, Illumina [up to 37123566] (imputed)	N
823	chr6	31322196	31322197	rs2428494	30013184	Waage J	2018-07-16	Nat Genet	Genome-wide association and HLA fine-mapping studies identify risk loci and genetic pathways underlying allergic rhinitis.	Allergic rhinitis	59,762 European and unknown ancestry cases, 152,358 European and unknown ancestry controls	60,720 European ancestry cases, 618,527 European ancestry controls	6p21.33	HLA-B, HLA-C	rs2428494-A	0.4226	7E-19		1.08	[1.06-1.09]	Affymetrix, Illumina, Perlegen [16531985] (imputed)	N
823	chr6	31322196	31322197	rs2428494	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Asthma	28,399 European ancestry cases, 128,843 European ancestry controls	NA	6p21.33	HLA-C, MICA	rs2428494-?	NR	1E-16		1.0869565	[1.06-1.11]	Illumina [13747813] (imputed)	N
823	chr6	31322228	31322229	rs3819301	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs3819301-G	NR	1E-10		0.0208254	[0.015-0.027] unit decrease	Affymetrix [321016] (imputed)	N
823	chr6	31322302	31322303	rs2308655	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs2308655-G	NR	2E-12		0.0206461	[0.015-0.026] unit decrease	Affymetrix [321016] (imputed)	N
823	chr6	31322366	31322367	rs3819299	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Angiopoietin-1 receptor levels	21,758 European ancestry individuals	9,173 individuals	6p21.33		rs3819299-T	0.91	4E-74		0.284	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
823	chr6	31322366	31322367	rs3819299	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	6p21.33	HLA-B	rs3819299-G	0.0557	2E-28		0.08786675	[0.072-0.103] unit increase	Affymetrix [~ 2500000] (imputed)	N
823	chr6	31322366	31322367	rs3819299	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	6p21.33	HLA-B	rs3819299-G	0.0557	4E-32		0.09360905	[0.078-0.109] unit increase	Affymetrix [~ 2500000] (imputed)	N
823	chr6	31322366	31322367	rs3819299	22139419	Gieger C	2011-11-30	Nature	New gene functions in megakaryopoiesis and platelet formation.	Platelet count	38,891 European ancestry individuals, 1,661 Val Borbera (founder/genetic isolate) individuals, 521 Carlantino (founder/genetic isolate) individuals, 1,198 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,213 South Tyrolean (founder/genetic isolate) individuals, 890 Sorbian (founder/genetic isolate) individuals, 4,292 Sardinian (founder/genetic isolate) individuals	Up to 16,949 European ancestry individuals, 854 Cliento (founder/genetic isolate) individuals, 1,035 Talana (founder/genetic isolate) individuals	6p21.33	HLA-B	rs3819299-G	NR	9E-10		5.048	[3.43-6.66] 10^9/l increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
823	chr6	31322394	31322395	rs17199328	30298529	Stanaway IB	2018-10-08	Genet Epidemiol	The eMERGE genotype set of 83,717 subjects imputed to ~40 million variants genome wide and association with the herpes zoster medical record phenotype.	Shingles	3,201 European ancestry cases, 34,960 European ancestry controls, 398 African American cases, 5,922 African American controls, 756 Asian ancestry individuals	NA	6p21.33	HLA-B	rs17199328-G	0.88	2E-10		1.3	NR	Affymetrix, Illumina [39127678] (imputed)	N
823	chr6	31322394	31322395	rs17199328	30298529	Stanaway IB	2018-10-08	Genet Epidemiol	The eMERGE genotype set of 83,717 subjects imputed to ~40 million variants genome wide and association with the herpes zoster medical record phenotype.	Shingles	3,201 European ancestry cases, 34,960 European ancestry controls, 398 African American cases, 5,922 African American controls, 756 Asian ancestry individuals	NA	6p21.33	HLA-B	rs17199328-G	0.86	9E-11	(EA)	1.32	NR	Affymetrix, Illumina [39127678] (imputed)	N
823	chr6	31322558	31322559	rs2523608	34642315	Ferreiro-Iglesias A	2021-10-12	Nat Commun	Germline determinants of humoral immune response to HPV-16 protect against oropharyngeal cancer.	Oropharynx cancer and human papilloma virus 16 negative oropharyngeal cancer	2,359 European ancestry cases, 565 European ancestry controls	NA	6p21.33		rs2523608-A	NR	4E-6		0.8429		Illumina [up to 7574753] (imputed)	N
823	chr6	31322558	31322559	rs2523608	33143745	Andlauer TFM	2020-11-04	BMC Med	Treatment- and population-specific genetic risk factors for anti-drug antibodies against interferon-beta: a GWAS.	Binding antibody response to interferon beta therapy in multiple sclerosis (antibody levels; all treatment preparations)	up to 2,000 German and Swedish ancestry individuals	up to 757 German and Swedish ancestry individuals	6p21.33		rs2523608-G	0.48	2E-13		0.18175249	[0.13-0.23] unit increase	Illumina [8550834] (imputed)	N
823	chr6	31322558	31322559	rs2523608	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	6p21.33	HLA-B	rs2523608-G	0.598724	6E-22		0.0304561	[0.026-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
823	chr6	31322558	31322559	rs2523608	23417110	Tin A	2013-02-16	Hum Genet	Genome-wide association study identified the human leukocyte antigen region as a novel locus for plasma beta-2 microglobulin.	Beta-2 microglubulin plasma levels	6,728 European ancestry individuals		6p21.33	HLA-B	rs2523608-A	0.59	9E-9		0.02	[0.012-0.028] unit increase	Affymetrix [2500000] (imputed)	N
823	chr6	31322558	31322559	rs2523608	21051598	Pereyra F	2010-11-04	Science	The major genetic determinants of HIV-1 control affect HLA class I peptide presentation.	HIV-1 control	516 European cases, 1,196 European controls, 341 African American cases, 892 African American controls, 117 Hispanic cases, 560 Hispanic controls	NA	6p21.33	HLA-B	rs2523608-G	0.326	9E-20	(AA)	2.6	[NR]	Illumina [1384048] (imputed)	N
823	chr6	31322558	31322559	rs2523608	20205591	Pelak K	2010-04-15	J Infect Dis	Host determinants of HIV-1 control in African Americans.	HIV-1 viral setpoint	515 African American cases	NA	6p21.33	HLA-B	rs2523608-?	0.37	3E-6				Illumina [1212217]	N
823	chr6	31322661	31322662	rs3819290	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cirrhosis	2,551 East Asian ancestry cases, 176,175 East Asian ancestry controls	NA	6p21.33		rs3819290-A	0.419917851	2E-8		0.16285886	[0.11-0.22] unit increase	Illumina [13429980] (imputed)	N
823	chr6	31322689	31322690	rs41543314	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p21.33	HLA-B	rs41543314-G	0.03	5E-21		1.23	[1.2-1.26]	Illumina [at least 560000] (imputed)	N
823	chr6	31322689	31322690	rs41543314	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p21.33	MICA, HLA-C	rs41543314-?	NR	5E-21		1.232	[1.180-1.286]	Illumina [13757430] (imputed)	N
823	chr6	31322789	31322790	rs2523607	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	6p21.33	NR	rs2523607-?	NR	3E-23		9.929	NR z score decrease	Illumina [at least 830937] (imputed)	N
823	chr6	31322789	31322790	rs2523607	25261932	Cerhan JR	2014-09-28	Nat Genet	Genome-wide association study identifies multiple susceptibility loci for diffuse large B cell lymphoma.	Diffuse large B cell lymphoma	3,857 European ancestry cases, 7,666 European ancestry controls	1,359 European ancestry cases, 4,557 European ancestry controls	6p21.33	HLA-B	rs2523607-A	0.120	2E-10		1.32	[1.21-1.44]	Illumina [8363971] (imputed)	N
823	chr6	31322854	31322855	rs3819282	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	6p21.33	HLA-B	rs3819282-T	0.055356	2E-49		0.07311976	[0.063-0.083] unit increase	Affymetrix [93095623] (imputed)	N
823	chr6	31322910	31322911	rs1051488	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28+ CD45RA- CD8+ T cell %CD8+ T cell	3,440 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs1051488-T	0.76756	9E-13		0.2395	[0.17-0.3] unit increase	Illumina [18357815] (imputed)	N
823	chr6	31322979	31322980	rs1131500	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Unstable angina pectoris	5,891 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	6p21.33		rs1131500-T	0.58966771	5E-8		0.108394966	[0.07-0.147] unit decrease	Illumina [13425416] (imputed)	N
823	chr6	31322979	31322980	rs1131500	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hepatic cancer	2,122 East Asian ancestry cases, 159,201 East Asian ancestry controls	NA	6p21.33		rs1131500-T	0.585310899	2E-8		0.17957471	[0.12-0.24] unit increase	Illumina [13427386] (imputed)	N
823	chr6	31323011	31323012	rs2854001	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (multivariate analysis)	477,968 European ancestry individuals	NA	6p21.33	HLA, B	rs2854001-A	0.237	1E-13		0.037	[0.027-0.047] unit decrease	NR [NR] (imputed)	N
823	chr6	31323011	31323012	rs2854001	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (age of onset)	117,130 European ancestry individuals	NA	6p21.33	HLA-B	rs2854001-A	0.237	5E-13		0.035	[0.025-0.045] unit decrease	NR [7647814] (imputed)	N
823	chr6	31323011	31323012	rs2854001	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	6p21.33	HLA-B	rs2854001-A	0.18	1E-19		1.059	[1.05-1.07]	Affymetrix, Illumina [8307659] (imputed)	N
823	chr6	31323019	31323020	rs2276448	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs2276448-C	NR	2E-9		0.0246643	[0.017-0.033] unit decrease	Affymetrix [321016] (imputed)	N
823	chr6	31323295	31323296	rs1050747	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p21.33	NR	rs1050747-A	0.276	6E-7	(IFNalpha_ABC_of_monocytes)			Illumina [5084123] (imputed)	N
823	chr6	31323352	31323353	rs2257269	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs2257269-A	NR	3E-8		0.0158694	[0.01-0.022] unit increase	Affymetrix [321169] (imputed)	N
823	chr6	31323479	31323480	rs41555513	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LRPAP1	5,365 Icelandic ancestry individuals	NA	6p21.33		rs41555513-A	0.02838	5E-183		1.5393	[1.43-1.64] unit increase	Illumina [7506463] (imputed)	N
823	chr6	31323676	31323677	rs4081559	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8 on naive CD8+ T cell	2,910 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs4081559-T	0.42998	7E-15		0.2396	[0.18-0.3] unit increase	Illumina [17945511] (imputed)	N
823	chr6	31323676	31323677	rs4081559	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8 on Central Memory CD8+ T cell	2,910 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs4081559-T	0.42981	5E-18		0.2638	[0.2-0.32] unit increase	Illumina [17945467] (imputed)	N
823	chr6	31323720	31323721	rs12526858	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	286 European ancestry cases, 2,652 European ancestry controls, 76 Han Chinese ancestry cases, 889 Han Chinese ancestry controls, 46 South Asian ancestry cases, 501 South Asian ancestry controls, 683 Turkish ancestry cases, 1,721 Turkish ancestry controls	NA	6p21.33	HLA-B	rs12526858-?	NR	2E-10	(conditional on rs2844678, rs12524487 and rs17193507)	2.7	NR	Illumina [up to 4495750] (imputed)	N
823	chr6	31323777	31323777	rs5875313	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	6p21.33	HLA-B	rs5875313-?	NR	2E-22		0.039188	[0.031-0.047] unit decrease	Illumina [13520550] (imputed)	N
823	chr6	31323884	31323885	rs41549217	25187353	Goldstein JI	2014-09-04	Nat Commun	Clozapine-induced agranulocytosis is associated with rare HLA-DQB1 and HLA-B alleles.	Clozapine-induced agranulocytosis	161 European ancestry cases, 1,196 European ancestry clozapine-treated and untreated controls	NA	6p21.33	HLA-B, MICA, HCP5, HCG26	rs41549217-T	0.0288	2E-7		4.6582	[4.08-5.24]	Illumina [8809853] (imputed)	N
823	chr6	31323944	31323945	rs2596493	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p21.33	HLA-B	rs2596493-A		5E-37		0.033	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
823	chr6	31323952	31323953	rs1131285	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total phospholipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	6p21.33		rs1131285-C	0.351647	3E-15		0.0324506	[0.024-0.04] unit decrease	NR [11722792] (imputed)	N
823	chr6	31323952	31323953	rs1131285	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total concentration of lipoprotein particles	115,082 European ancestry individuals	NA	6p21.33		rs1131285-C	0.351647	4E-16		0.0330692	[0.025-0.041] unit decrease	NR [11722792] (imputed)	N
823	chr6	31323952	31323953	rs1131285	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholines levels	115,006 European ancestry individuals	NA	6p21.33		rs1131285-C	0.351645	1E-15		0.0325161	[0.025-0.04] unit decrease	NR [11722792] (imputed)	N
823	chr6	31323952	31323953	rs1131285	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphoglycerides levels	115,006 European ancestry individuals	NA	6p21.33		rs1131285-C	0.351645	1E-16		0.0336813	[0.026-0.042] unit decrease	NR [11722792] (imputed)	N
823	chr6	31323952	31323953	rs1131285	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphatidylcholine levels	115,006 European ancestry individuals	NA	6p21.33		rs1131285-C	0.351645	2E-14		0.0309477	[0.023-0.039] unit decrease	NR [11722792] (imputed)	N
823	chr6	31323952	31323953	rs1131285	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small HDL	115,082 European ancestry individuals	NA	6p21.33		rs1131285-C	0.351647	1E-19		0.0383404	[0.03-0.047] unit decrease	NR [11722792] (imputed)	N
823	chr6	31323952	31323953	rs1131285	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of HDL particles	115,082 European ancestry individuals	NA	6p21.33		rs1131285-C	0.351647	8E-15		0.0314644	[0.024-0.039] unit decrease	NR [11722792] (imputed)	N
823	chr6	31323952	31323953	rs1131285	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-B	rs1131285-C	NR	2E-20		0.0295293	[0.023-0.036] unit increase	Affymetrix [323123] (imputed)	N
823	chr6	31323959	31323960	rs1131275	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small HDL particles	115,082 European ancestry individuals	NA	6p21.33		rs1131275-G	0.354525	2E-16		0.0356328	[0.027-0.044] unit decrease	NR [11722792] (imputed)	N
823	chr6	31323959	31323960	rs1131275	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	6p21.33		rs1131275-G	0.354525	2E-12		0.0303448	[0.022-0.039] unit decrease	NR [11722792] (imputed)	N
823	chr6	31323959	31323960	rs1131275	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small HDL	115,082 European ancestry individuals	NA	6p21.33		rs1131275-G	0.354525	1E-13		0.032099	[0.024-0.041] unit decrease	NR [11722792] (imputed)	N
823	chr6	31323959	31323960	rs1131275	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small HDL	115,082 European ancestry individuals	NA	6p21.33		rs1131275-G	0.354525	3E-16		0.0351817	[0.027-0.044] unit decrease	NR [11722792] (imputed)	N
823	chr6	31323959	31323960	rs1131275	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs1131275-G	NR	3E-16		0.0239071	[0.018-0.03] unit increase	Affymetrix [321016] (imputed)	N
823	chr6	31323959	31323960	rs1131275	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.33	HLA-B, HLA-C, MICA, MIR6891	rs1131275-C		2E-9		1.07	[1.05-1.09]	Affymetrix, Illumina [NR]	N
823	chr6	31324022	31324023	rs9266141	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	6p21.33		rs9266141-C	0.762115	4E-8		0.026858	[0.017-0.036] unit decrease	NR [11722792] (imputed)	N
823	chr6	31324050	31324051	rs41551018	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large LDL	115,082 European ancestry individuals	NA	6p21.33		rs41551018-C	0.94907	8E-9		0.0559586	[0.037-0.075] unit increase	NR [11722792] (imputed)	N
823	chr6	31324050	31324051	rs41551018	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in LDL	115,082 European ancestry individuals	NA	6p21.33		rs41551018-C	0.94907	3E-8		0.0541168	[0.035-0.073] unit increase	NR [11722792] (imputed)	N
823	chr6	31324063	31324064	rs41541519	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	6p21.33		rs41541519-T	0.943422	6E-15		0.0680912	[0.051-0.085] unit decrease	NR [11722792] (imputed)	N
823	chr6	31324063	31324064	rs41541519	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	6p21.33		rs41541519-T	0.943422	1E-14		0.068039	[0.051-0.085] unit increase	NR [11722792] (imputed)	N
823	chr6	31324076	31324077	rs709053	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic hepatitis C infection	7,110 East Asian ancestry cases, 169,588 East Asian ancestry controls	NA	6p21.33		rs709053-G	0.531697454	2E-9		0.10874995	[0.073-0.144] unit increase	Illumina [13429570] (imputed)	N
823	chr6	31324193	31324194	rs3179865	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium VLDL	115,082 European ancestry individuals	NA	6p21.33		rs3179865-G	0.601663	1E-12		0.0320819	[0.023-0.041] unit decrease	NR [11722792] (imputed)	N
823	chr6	31324193	31324194	rs3179865	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	6p21.33		rs3179865-G	0.601663	2E-14		0.0342334	[0.025-0.043] unit decrease	NR [11722792] (imputed)	N
823	chr6	31324193	31324194	rs3179865	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Polyunsaturated fatty acid levels	115,006 European ancestry individuals	NA	6p21.33		rs3179865-G	0.601691	1E-22		0.0432465	[0.035-0.052] unit decrease	NR [11722792] (imputed)	N
823	chr6	31324193	31324194	rs3179865	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium VLDL	115,082 European ancestry individuals	NA	6p21.33		rs3179865-G	0.601663	8E-11		0.0295901	[0.021-0.039] unit decrease	NR [11722792] (imputed)	N
823	chr6	31324193	31324194	rs3179865	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-6 fatty acid levels	115,006 European ancestry individuals	NA	6p21.33		rs3179865-G	0.601691	5E-20		0.0407746	[0.032-0.049] unit decrease	NR [11722792] (imputed)	N
823	chr6	31324193	31324194	rs3179865	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Linoleic acid levels	115,006 European ancestry individuals	NA	6p21.33		rs3179865-G	0.601691	6E-18		0.0386477	[0.03-0.047] unit decrease	NR [11722792] (imputed)	N
823	chr6	31324193	31324194	rs3179865	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium VLDL particles	115,082 European ancestry individuals	NA	6p21.33		rs3179865-G	0.601663	3E-11		0.030107	[0.021-0.039] unit decrease	NR [11722792] (imputed)	N
823	chr6	31324193	31324194	rs3179865	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small LDL	115,082 European ancestry individuals	NA	6p21.33		rs3179865-G	0.601663	7E-10		0.0281534	[0.019-0.037] unit decrease	NR [11722792] (imputed)	N
823	chr6	31324193	31324194	rs3179865	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium LDL	115,082 European ancestry individuals	NA	6p21.33		rs3179865-G	0.601663	6E-10		0.0282833	[0.019-0.037] unit decrease	NR [11722792] (imputed)	N
823	chr6	31324193	31324194	rs3179865	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	6p21.33	HLA-B	rs3179865-G	0.601088	2E-19		0.020709	[0.016-0.025] unit decrease	Affymetrix [NR] (imputed)	N
823	chr6	31324205	31324205	rs760342210	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	74,970 East Asian ancestry individuals	NA	6p21.33		rs760342210-GCC	0.376979	5E-8		0.0270505	[0.017-0.037] unit increase	Illumina [13465896] (imputed)	N
823	chr6	31324372	31324373	rs4999718	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	6p21.33	HLA-B	rs4999718-A	0.630768	4E-11		0.0144802	[0.01-0.019] unit decrease	Affymetrix [NR] (imputed)	N
823	chr6	31324374	31324375	rs41563615	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	6p21.33	HLA-B	rs41563615-T	0.054192	3E-12		0.036900084	[0.027-0.047] unit increase	Affymetrix [93095623] (imputed)	N
823	chr6	31324414	31324415	rs2507989	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.33	C6orf15, CCHCR1, CDSN, DDR1, DPCR1, GTF2H4, HCG22, HCG26, HCG27, HCP5, HLA-B, HLA-C, LINC00243, MICA, MICB, MIR4640, MIR6891, MUC21, MUC22, POU5F1, PSORS1C1, PSORS1C2, PSORS1C3, SFTA2, TCF19, VARS2	rs2507989-A		2E-12		1.11	[1.08-1.14]	Affymetrix, Illumina [NR]	N
823	chr6	31324498	31324499	rs3190923	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	6p21.33	HLA-B	rs3190923-G	NR	9E-22		1.129	[1.1-1.15]	Affymetrix [9000000] (imputed)	N
823	chr6	31324526	31324527	rs1140404	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs1140404-G	0.037	9E-49	(Ubiquitin carboxyl-terminal hydrolase 25, USP25.9215.117.3)	1.04	[0.9-1.18] unit increase	Affymetrix [10572788] (imputed)	N
823	chr6	31324535	31324536	rs1071816	27157822	Hallberg P	2016-05-03	Lancet Diabetes Endocrinol	Genetic variants associated with antithyroid drug-induced agranulocytosis: a genome-wide association study in a European population.	Anti-thyroid drug induced agranulocytosis	38 European ancestry cases, 1 case, 5,170 European ancestry controls	NA	6p21.33	HLA-B	rs1071816-?	NR	2E-9	(adjusted for rs652888, rs199564443)	5.27	[3.06-9.10]	Illumina [9380034] (imputed)	N
823	chr6	31324546	31324547	rs1065386	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Skin cancer	25,928 European ancestry cases, 466,275 European ancestry controls, 154 East Asian ancestry cases, 178,572 East Asian ancestry controls	NA	6p21.33		rs1065386-C	NR	4E-16		0.0833	[0.063-0.103] unit decrease	Affymetrix, Illumina [25845421] (imputed)	N
823	chr6	31324546	31324547	rs1065386	31482010	Liu C	2019-08-29	NPJ Genom Med	Genome-wide association study for proliferative diabetic retinopathy in Africans.	Proliferative diabetic retinopathy	64 African ancestry cases, 227 African ancestry controls	19 African American cases, 50 African American controls	6p21.33	HLA-B	rs1065386-C	0.43	5E-8		1.17	[1.11-1.24]	Affymetrix, Illumina [18433741] (imputed)	N
823	chr6	31324561	31324562	rs1050564	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p21.33		rs1050564-C	0.934	1E-8				Affymetrix [10369434] (imputed)	N
823	chr6	31324585	31324586	rs1050556	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6p21.33		rs1050556-C	0.496516	2E-16		0.0326351	[0.025-0.04] unit decrease	NR [11722792] (imputed)	N
823	chr6	31324585	31324586	rs1050556	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	6p21.33		rs1050556-C	0.496356	2E-8		0.0229425	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
823	chr6	31324585	31324586	rs1050556	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	6p21.33		rs1050556-C	0.496516	1E-12		0.0288659	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
823	chr6	31324585	31324586	rs1050556	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	6p21.33		rs1050556-C	0.496356	9E-12		0.0277973	[0.02-0.036] unit increase	NR [11722792] (imputed)	N
823	chr6	31324585	31324586	rs1050556	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	6p21.33		rs1050556-C	0.496516	3E-14		0.0298158	[0.022-0.038] unit increase	NR [11722792] (imputed)	N
823	chr6	31324585	31324586	rs1050556	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	6p21.33		rs1050556-C	0.496356	7E-9		0.0232063	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
823	chr6	31324598	31324599	rs1050538	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pollinosis	2,894 European ancestry cases, 472,484 European ancestry controls, 18,593 East Asian ancestry cases, 153,666 East Asian ancestry controls	NA	6p21.33		rs1050538-G	NR	4E-11		0.1044	[0.073-0.135] unit increase	Affymetrix, Illumina [25844049] (imputed)	N
823	chr6	31324598	31324599	rs1050538	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pollinosis	18,593 East Asian ancestry cases, 153,666 East Asian ancestry controls	NA	6p21.33		rs1050538-G	0.156083872	3E-13		0.11941082	[0.087-0.152] unit increase	Illumina [13429010] (imputed)	N
823	chr6	31324598	31324599	rs1050538	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.33		rs1050538-T	0.88	6E-31				Affymetrix [10369434] (imputed)	N
823	chr6	31324614	31324615	rs1050529	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B, XXbac-BPG248L24.12	rs1050529-T	NR	1E-10		0.0196216	[0.014-0.026] unit increase	Affymetrix [319769] (imputed)	N
823	chr6	31324614	31324615	rs1050529	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-B, XXbac-BPG248L24.12	rs1050529-T	NR	1E-10		0.0197135	[0.014-0.026] unit increase	Affymetrix [319769] (imputed)	N
823	chr6	31324614	31324615	rs1050529	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HLA-B, XXbac-BPG248L24.12	rs1050529-T	NR	2E-9		0.0184587	[0.012-0.025] unit increase	Affymetrix [321169] (imputed)	N
823	chr6	31324614	31324615	rs1050529	27539887	Chahal HS	2016-08-19	Nat Commun	Genome-wide association study identifies 14 novel risk alleles associated with basal cell carcinoma.	Basal cell carcinoma	12.945 European ancestry cases, 274,252 European ancestry controls	4,242 European ancestry cases, 12,802 European ancestry controls	6p21.33	HLA-B	rs1050529-C	0.75	3E-9		1.11	[NR]	Illumina [at least 560000] (imputed)	N
823	chr6	31324646	31324647	rs9266183	33794208	Bowden SJ	2021-04-01	Lancet Oncol	Genetic variation in cervical preinvasive and invasive disease: a genome-wide association study.	Cervical intraepithelial neoplasia grade 3 and invasive cervical cancer	764 European ancestry invasive cervical cancer cases, 4,005 European ancestry cervical intraepithelial neoplasia grade 3 cases, 145,545 European ancestry controls	NA	6p21.33	HLA-B	rs9266183-?	NR	2E-6		0.73	[0.64-0.83]	Affymetrix [9600464] (imputed)	N
823	chr6	31324663	31324664	rs9266184	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	6p21.33	NR	rs9266184-T	0.681489	3E-38		0.0111127	[0.0093-0.0129] unit increase	Affymetrix [16582909] (imputed)	N
823	chr6	31324663	31324664	rs9266184	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	6p21.33	NR	rs9266184-T	0.681894	6E-21		0.0114334	[0.0089-0.0139] unit increase	Affymetrix [16582621] (imputed)	N
823	chr6	31324663	31324664	rs9266184	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	6p21.33	NR	rs9266184-T	0.681489	6E-19		0.00854714	[0.0065-0.0106] unit increase	Affymetrix [16582965] (imputed)	N
823	chr6	31324663	31324664	rs9266184	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	6p21.33	NR	rs9266184-T	0.681894	3E-14		0.0100512	[0.0074-0.0127] unit increase	Affymetrix [16582614] (imputed)	N
823	chr6	31324710	31324711	rs2596492	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	6p21.33	NR	rs2596492-?	NR	4E-9	(TIE2)	0.356932	[0.24-0.48] unit decrease	Illumina [11901634] (imputed)	N
823	chr6	31324741	31324742	rs147324178	30850646	Tziotzios C	2019-03-08	Nat Commun	Genome-wide association study in frontal fibrosing alopecia identifies four susceptibility loci including HLA-B*07:02.	Frontal fibrosing alopecia	1,016 European ancestry cases, 4,145 European ancestry controls		6p21.33	NR	rs147324178-?	0.144	6E-118		5.25	[4.56-6.04]	Illumina [~ 8000000] (imputed)	N
823	chr6	31324755	31324756	rs41552714	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	HLA-B	rs41552714-A	0.039	1E-240	(alpha-2-macroglobulin receptor-associated protein, LRPAP1.3640.14.3)	1.81	[1.71-1.91] unit increase	Affymetrix [10572788] (imputed)	N
823	chr6	31324755	31324756	rs41552714	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	HLA-B	rs41552714-A	0.039	1E-163	(alpha-2-macroglobulin receptor-associated protein, LRPAP1.8829.4.3)	1.55	[1.43-1.67] unit increase	Affymetrix [10572788] (imputed)	N
823	chr6	31324891	31324892	rs1131159	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HLA-B, XXbac-BPG248L24.12	rs1131159-G	NR	4E-14		0.0217591	[0.016-0.027] unit decrease	Affymetrix [321169] (imputed)	N
823	chr6	31324894	31324895	rs1131156	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-B, XXbac-BPG248L24.12	rs1131156-C	NR	1E-9		0.0188501	[0.013-0.025] unit decrease	Affymetrix [323123] (imputed)	N
823	chr6	31324937	31324938	rs114811870	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.33	NR	rs114811870-T	0.018	5E-6	(men)	0.383654	[0.22-0.55] unit increase	Affymetrix [up to 8900000] (imputed)	N
823	chr6	31324937	31324938	rs114811870	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.33	NR	rs114811870-T	0.017	5E-6	(women)	0.551537	[0.32-0.79] unit increase	Affymetrix [up to 8900000] (imputed)	N
823	chr6	31324937	31324938	rs114811870	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.33	NR	rs114811870-T	0.017	2E-11		0.467547	[0.33-0.6] unit increase	Affymetrix [up to 8900000] (imputed)	N
823	chr6	31324954	31324955	rs34437781	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	6p21.33	HLA-B, MICA	rs34437781-T	0.056778	2E-8		1.0949099	[1.06-1.13]	Affymetrix [8274727] (imputed)	N
823	chr6	31325003	31325004	rs9266209	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs9266209-G	NR	3E-9		0.0185837	[0.012-0.025] unit decrease	Affymetrix [323858] (imputed)	N
823	chr6	31325003	31325004	rs9266209	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs9266209-G	NR	3E-8		0.0173878	[0.011-0.024] unit decrease	Affymetrix [127266] (imputed)	N
823	chr6	31325003	31325004	rs9266209	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs9266209-G	NR	4E-11		0.0202182	[0.014-0.026] unit increase	Affymetrix [323123] (imputed)	N
823	chr6	31325055	31325056	rs2596487	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (mother's age at death or mother's attained age)	up to 699,000 individuals	NA	6p21.33	NR	rs2596487-G		6E-6				Illumina [458525]	N
823	chr6	31325089	31325090	rs9266216	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	IgA nephropathy	15,587 European ancestry cases, 462,197 European ancestry controls, 71 East Asian ancestry cases, 175,288 East Asian ancestry controls	NA	6p21.33		rs9266216-T	NR	5E-27		0.1292	[0.11-0.15] unit increase	Affymetrix, Illumina [25844273] (imputed)	N
823	chr6	31325089	31325090	rs9266216	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs9266216-C	NR	7E-21		0.0269561	[0.021-0.033] unit decrease	Affymetrix [319769] (imputed)	N
823	chr6	31325089	31325090	rs9266216	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs9266216-C	NR	1E-19		0.0260947	[0.02-0.032] unit decrease	Affymetrix [319769] (imputed)	N
823	chr6	31325089	31325090	rs9266216	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs9266216-C	NR	8E-15		0.0223066	[0.017-0.028] unit increase	Affymetrix [321016] (imputed)	N
823	chr6	31325192	31325193	rs9266225	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs9266225-C	NR	9E-10		0.0204683	[0.014-0.027] unit decrease	Affymetrix [323123] (imputed)	N
823	chr6	31325322	31325323	rs9266229	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.33	NR	rs9266229-C	NR	4E-9		0.023	unit decrease	Affymetrix [at least 7091467] (imputed)	N
823	chr6	31325322	31325323	rs9266229	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.33	NR	rs9266229-C	0.53	1E-9	(EA)	0.026	unit decrease	Affymetrix [at least 7091467] (imputed)	N
823	chr6	31325322	31325323	rs9266229	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.33	NR	rs9266229-C	NR	3E-10		0.027	unit decrease	Affymetrix [at least 7091467] (imputed)	N
823	chr6	31325322	31325323	rs9266229	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.33	NR	rs9266229-C	0.53	2E-10	(EA)	0.03	unit decrease	Affymetrix [at least 7091467] (imputed)	N
823	chr6	31325322	31325323	rs9266229	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.33	NR	rs9266229-C	NR	1E-6		0.021	unit decrease	Affymetrix [at least 7091467] (imputed)	N
823	chr6	31325322	31325323	rs9266229	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.33	NR	rs9266229-C	0.53	1E-6	(EA)	0.023	unit decrease	Affymetrix [at least 7091467] (imputed)	N
823	chr6	31325340	31325341	rs9266230	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	6p21.33	NR	rs9266230-G	0.359851	1E-35		0.0263621	[0.022-0.031] unit decrease	NR [NR]	N
823	chr6	31325442	31325443	rs114777460	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mumps	31,227 European ancestry cases, 54,153 European ancestry controls	NA	6p21.33	NR	rs114777460-?	NR	4E-6		0.1022	[0.058-0.146] unit decrease	Illumina [at least 560000] (imputed)	N
823	chr6	31325520	31325521	rs9266237	31527586	An J	2019-09-16	Nat Commun	Gastroesophageal reflux GWAS identifies risk loci that also associate with subsequent severe esophageal diseases.	Gastroesophageal reflux disease	80,265 European and unknown ancestry cases, 305,011 European and unknown ancestry controls	NA	6p21.33	MICA, HLA-B	rs9266237-C	NR	2E-11		1.0409149	[1.03-1.05]	Affymetrix, Illumina [up to 7600000] (imputed)	N
823	chr6	31325691	31325692	rs9266244	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs9266244-G	NR	2E-20		0.0316292	[0.025-0.038] unit decrease	Affymetrix [323858] (imputed)	N
823	chr6	31325691	31325692	rs9266244	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	6p21.33	HLA-B	rs9266244-A	0.7077	1E-94		0.0427	[0.039-0.047] unit decrease	Affymetrix [18391927] (imputed)	N
823	chr6	31325701	31325702	rs9266245	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs9266245-A	NR	1E-17		0.0293064	[0.023-0.036] unit decrease	Affymetrix [127266] (imputed)	N
823	chr6	31325701	31325702	rs9266245	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs9266245-A	NR	4E-9		0.0199304	[0.013-0.027] unit decrease	Affymetrix [323858] (imputed)	N
823	chr6	31325701	31325702	rs9266245	30003630	Minica CC	2018-07-13	Addiction	GENOME-WIDE ASSOCIATION META-ANALYSIS OF AGE AT FIRST CANNABIS USE.	Cannabis use (age at onset)	24,953 European ancestry individuals	3,735 European ancestry individuals	6p21.33	NR	rs9266245-A	0.2655	5E-6		0.06	[0.033-0.087] unit decrease	Affymetrix, Illumina, Perlegen [6163759] (imputed)	N
823	chr6	31325744	31325745	rs74618856	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs74618856-T	NR	3E-13		0.0210177	[0.015-0.027] unit decrease	Affymetrix [321169] (imputed)	N
823	chr6	31325757	31325758	rs9266248	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs9266248-G	NR	5E-11		0.0206568	[0.014-0.027] unit decrease	Affymetrix [323858] (imputed)	N
823	chr6	31325757	31325758	rs9266248	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs9266248-G	NR	6E-10		0.0194387	[0.013-0.026] unit decrease	Affymetrix [127266] (imputed)	N
823	chr6	31325791	31325792	rs9266250	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs9266250-A	NR	5E-20		0.0288475	[0.023-0.035] unit increase	Affymetrix [323123] (imputed)	N
823	chr6	31325846	31325847	rs9266253	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs9266253-G	NR	8E-10		0.021803	[0.015-0.029] unit increase	Affymetrix [319769] (imputed)	N
823	chr6	31325846	31325847	rs9266253	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs9266253-G	NR	6E-10		0.0219864	[0.015-0.029] unit increase	Affymetrix [319769] (imputed)	N
823	chr6	31325850	31325851	rs28694041	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs28694041-G	NR	4E-17		0.0237224	[0.018-0.029] unit decrease	Affymetrix [321016] (imputed)	N
823	chr6	31325879	31325880	rs9266255	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6p21.33		rs9266255-G	0.51289	7E-12		0.0273638	[0.02-0.035] unit increase	NR [11722792] (imputed)	N
823	chr6	31325879	31325880	rs9266255	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs9266255-A	NR	1E-9		0.0189485	[0.013-0.025] unit increase	Affymetrix [323858] (imputed)	N
823	chr6	31325879	31325880	rs9266255	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs9266255-A	NR	2E-20		0.0284303	[0.022-0.034] unit decrease	Affymetrix [323123] (imputed)	N
823	chr6	31325879	31325880	rs9266255	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	6p21.33	HLA-B	rs9266255-A	0.485918	3E-10		0.015893243	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
823	chr6	31325885	31325886	rs9266257	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	6p21.33		rs9266257-G	0.332679	3E-14		0.0320363	[0.024-0.04] unit increase	NR [11722792] (imputed)	N
823	chr6	31325885	31325886	rs9266257	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	6p21.33		rs9266257-G	0.332679	2E-18		0.036957	[0.029-0.045] unit increase	NR [11722792] (imputed)	N
823	chr6	31325885	31325886	rs9266257	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	6p21.33	Intergenic	rs9266257-G	0.2867	3E-10		0.0158	[0.011-0.021] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
823	chr6	31325885	31325886	rs9266257	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	6p21.33	Intergenic	rs9266257-C	0.6642	1E-12	(MTAG)	0.0175	[0.013-0.022] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
823	chr6	31326081	31326082	rs9266271	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.33		rs9266271-T	0.645	8E-27				Affymetrix [10369434] (imputed)	N
823	chr6	31326081	31326082	rs9266271	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs9266271-C	NR	6E-18		0.0254246	[0.02-0.031] unit increase	Affymetrix [319769] (imputed)	N
823	chr6	31326081	31326082	rs9266271	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs9266271-C	NR	6E-17		0.0246745	[0.019-0.03] unit increase	Affymetrix [319769] (imputed)	N
823	chr6	31326081	31326082	rs9266271	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs9266271-C	NR	1E-12		0.0209457	[0.015-0.027] unit decrease	Affymetrix [321016] (imputed)	N
823	chr6	31326081	31326082	rs9266271	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs9266271-C	NR	3E-8		0.0177807	[0.011-0.024] unit decrease	Affymetrix [323123] (imputed)	N
823	chr6	31326081	31326082	rs9266271	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs9266271-C	NR	2E-13		0.0220232	[0.016-0.028] unit increase	Affymetrix [321169] (imputed)	N
823	chr6	31326082	31326083	rs62396273	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs62396273-T	NR	1E-15		0.0313037	[0.024-0.039] unit decrease	Affymetrix [321016] (imputed)	N
823	chr6	31326082	31326083	rs62396273	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs62396273-T	NR	2E-8		0.023758	[0.015-0.032] unit decrease	Affymetrix [323123] (imputed)	N
823	chr6	31326130	31326131	rs73390208	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	6p21.33		rs73390208-C	0.728652	1E-9		0.028278	[0.019-0.037] unit decrease	NR [11722792] (imputed)	N
823	chr6	31326130	31326131	rs73390208	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs73390208-T	NR	2E-8		0.0177817	[0.012-0.024] unit decrease	Affymetrix [321016] (imputed)	N
823	chr6	31326165	31326166	rs4947311	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hypothyroidism	1,114 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	6p21.33		rs4947311-T	0.840267659	5E-8		0.32545814	[0.21-0.44] unit increase	Illumina [13429045] (imputed)	N
823	chr6	31326165	31326166	rs4947311	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs4947311-T	NR	3E-8		0.0173305	[0.011-0.023] unit increase	Affymetrix [127266] (imputed)	N
823	chr6	31326165	31326166	rs4947311	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	6p21.33	HLA-B	rs4947311-T	0.491335	1E-26		0.023138076	[0.019-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
823	chr6	31326165	31326166	rs4947311	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	6p21.33	HLA-B	rs4947311-T	0.4917	6E-26		0.03719869	[0.03-0.044] unit decrease	Affymetrix [~ 2500000] (imputed)	N
823	chr6	31326186	31326186	rs112261624	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p21.33	HLA-B	rs112261624-ATTG	0.126731	3E-11		0.025527913	[0.018-0.033] unit increase	Affymetrix [93095623] (imputed)	N
824	chr6	31326222	31326223	rs2596474	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs2596474-G	NR	1E-8		0.0167607	[0.011-0.023] unit increase	Affymetrix [321169] (imputed)	N
824	chr6	31326250	31326251	rs9405084	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs9405084-T	NR	1E-13		0.0243425	[0.018-0.031] unit decrease	Affymetrix [323123] (imputed)	N
824	chr6	31326250	31326251	rs9405084	32488134	Auckland K	2020-06-02	Sci Rep	The Human Leukocyte Antigen Locus and Rheumatic Heart Disease Susceptibility in South Asians and Europeans.	Rheumatic heart disease	510 Northern Indian cases, 344 Northern Indian controls, 162 Fijian Indian cases, 147 Fijian Indian controls	150 European ancestry cases, 1,309 European ancestry controls	6p21.33	HLA-B	rs9405084-?		3E-6		1.36	[1.19-1.55]	Illumina [6925553] (imputed)	N
824	chr6	31326250	31326251	rs9405084	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	Composite immunoglobulin trait (IgA/IgM)	14,183 Icelandic ancestry individuals	2,146 Swedish ancestry individuals	6p21.33	HLA-B	rs9405084-T	0.3546	8E-13		0.09	NR SD units decrease	Illumina [21568490] (imputed)	N
824	chr6	31326271	31326272	rs9266276	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	6p21.33	NR	rs9266276-?	NR	1E-10		0.0815	[0.057-0.106] unit decrease	Illumina [at least 560000] (imputed)	N
824	chr6	31326288	31326289	rs9378248	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6p21.33		rs9378248-G	0.658186	5E-12		0.0289275	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
824	chr6	31326288	31326289	rs9378248	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to monounsaturated fatty acids	115,006 European ancestry individuals	NA	6p21.33		rs9378248-G	0.658178	1E-9		0.0253981	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
824	chr6	31326288	31326289	rs9378248	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of monounsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	6p21.33		rs9378248-G	0.658178	5E-12		0.0287948	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
824	chr6	31326288	31326289	rs9378248	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	6p21.33		rs9378248-G	0.658186	6E-9		0.0251651	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
824	chr6	31326288	31326289	rs9378248	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6p21.33		rs9378248-G	0.658186	2E-15		0.0323775	[0.024-0.04] unit increase	NR [11722792] (imputed)	N
824	chr6	31326288	31326289	rs9378248	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6p21.33		rs9378248-G	0.658186	3E-12		0.0285178	[0.021-0.036] unit increase	NR [11722792] (imputed)	N
824	chr6	31326288	31326289	rs9378248	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6p21.33		rs9378248-G	0.658186	2E-15		0.0327076	[0.025-0.041] unit increase	NR [11722792] (imputed)	N
824	chr6	31326288	31326289	rs9378248	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6p21.33		rs9378248-G	0.658186	5E-12		0.028241	[0.02-0.036] unit increase	NR [11722792] (imputed)	N
824	chr6	31326288	31326289	rs9378248	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs9378248-A	NR	3E-12		0.0207417	[0.015-0.027] unit decrease	Affymetrix [321016] (imputed)	N
824	chr6	31326288	31326289	rs9378248	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	6p21.33	HLA-B	rs9378248-G	0.657666	3E-54		0.0324826	[0.028-0.037] unit decrease	Affymetrix [NR] (imputed)	N
824	chr6	31326288	31326289	rs9378248	31589552	Lind L	2019-10-07	Metab Syndr Relat Disord	Genome-Wide Association Study of the Metabolic Syndrome in UK Biobank.	Metabolic syndrome	291,107 European ancestry individuals	NA	6p21.33	HLA-B	rs9378248-A	0.339668	2E-10		0.0440684	[0.031-0.058] unit increase	Affymetrix [9463307] (imputed)	N
824	chr6	31326288	31326289	rs9378248	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	6p21.33	Intergenic	rs9378248-A	0.386	7E-10	(MTAG)	0.0105	[0.0072-0.0138] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
824	chr6	31326288	31326289	rs9378248	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6p21.33	Intergenic	rs9378248-A	0.3659	8E-10	(MTAG)	0.0086	[0.0059-0.0113] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
824	chr6	31326612	31326613	rs9266277	35074870	Chia R	2022-02-01	Proc Natl Acad Sci U S A	Identification of genetic risk loci and prioritization of genes and pathways for myasthenia gravis: a genome-wide association study.	Myasthenia gravis	1,873 European ancestry cases, 36,370 European ancestry controls	7,412 European ancestry individuals	6p21.33		rs9266277-A	0.347	7E-10		1.29	[1.2-1.4]	Illumina [24006246] (imputed)	N
824	chr6	31326919	31326920	rs2395475	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs2395475-G	NR	1E-18		0.0259014	[0.02-0.032] unit decrease	Affymetrix [321169] (imputed)	N
824	chr6	31326959	31326960	rs2523591	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p21.33	HLA-B	rs2523591-G	0.58	2E-27		1.14	[1.13-1.16]	Illumina [at least 560000] (imputed)	N
824	chr6	31327033	31327034	rs116666910	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	6p21.33	HLA-B	rs116666910-A	0.042838	3E-36		0.07363684	[0.062-0.085] unit increase	Affymetrix [93095623] (imputed)	N
824	chr6	31327063	31327064	rs2523590	35215271	Almandil NB	2022-01-27	Pharmaceuticals (Basel)	Integration of Transcriptome and Exome Genotyping Identifies Significant Variants with Autism Spectrum Disorder.	Autism spectrum disorder	70 Arab ancestry cases, 132 Arab ancestry controls	NA	6p21.33	NA	rs2523590-G	0.4059	2E-6		0.2661	[0.1511-0.4689]	Illumina [243345]	N
824	chr6	31327063	31327064	rs2523590	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Anxiety	at least 23,606 European ancestry cases, at least 113,351 European ancestry controls	624,615 European ancestry cases, 1,310,854 European ancestry controls	6p21.33	XXbac, BPG248L24.12	rs2523590-T	0.3002	2E-17		0.020998826	[0.015-0.027] unit decrease	NR [9417325] (imputed)	N
824	chr6	31327063	31327064	rs2523590	21051598	Pereyra F	2010-11-04	Science	The major genetic determinants of HIV-1 control affect HLA class I peptide presentation.	HIV-1 control	516 European cases, 1,196 European controls, 341 African American cases, 892 African American controls, 117 Hispanic cases, 560 Hispanic controls	NA	6p21.33	HLA-B	rs2523590-C	0.164	2E-13	(AA)	2.4	[NR]	Illumina [1384048] (imputed)	N
824	chr6	31327177	31327178	rs2249935	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs2249935-A	NR	2E-11		0.02495	[0.018-0.032] unit decrease	Affymetrix [323858] (imputed)	N
824	chr6	31327177	31327178	rs2249935	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs2249935-A	NR	2E-10		0.0236711	[0.016-0.031] unit decrease	Affymetrix [127266] (imputed)	N
824	chr6	31327177	31327178	rs2249935	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs2249935-A	NR	6E-9		0.0213066	[0.014-0.028] unit increase	Affymetrix [323123] (imputed)	N
824	chr6	31327177	31327178	rs2249935	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	6p21.33	HLA-B	rs2249935-A	0.226813	5E-14		0.022285966	[0.016-0.028] unit increase	Affymetrix [93095623] (imputed)	N
824	chr6	31327333	31327334	rs2523589	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2523589-G	0.504575	7E-11		0.0266546	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
824	chr6	31327333	31327334	rs2523589	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CDH7	5,355 Icelandic ancestry individuals	NA	6p21.33		rs2523589-G	0.4994	3E-12		0.128281	[0.092-0.164] unit increase	Illumina [7506463] (imputed)	N
824	chr6	31327333	31327334	rs2523589	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs2523589-T	NR	4E-15		0.0220143	[0.017-0.028] unit increase	Affymetrix [319769] (imputed)	N
824	chr6	31327333	31327334	rs2523589	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs2523589-T	NR	5E-9		0.0182205	[0.012-0.024] unit increase	Affymetrix [323858] (imputed)	N
824	chr6	31327333	31327334	rs2523589	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs2523589-T	NR	8E-14		0.0209932	[0.015-0.026] unit increase	Affymetrix [319769] (imputed)	N
824	chr6	31327333	31327334	rs2523589	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs2523589-T	NR	3E-10		0.0176998	[0.012-0.023] unit decrease	Affymetrix [321016] (imputed)	N
824	chr6	31327333	31327334	rs2523589	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs2523589-T	NR	2E-15		0.0225538	[0.017-0.028] unit increase	Affymetrix [321169] (imputed)	N
824	chr6	31327333	31327334	rs2523589	33608531	Wu Y	2021-02-19	Nat Commun	GWAS of peptic ulcer disease implicates Helicobacter pylori infection, other gastrointestinal disorders and depression.	Gastroesophageal reflux disease	54,854 European ancestry cases, 401,473 European ancestry controls	NA	6p21.33	NR	rs2523589-G	0.5	5E-13		0.95	[NR]	NR [8546065] (imputed)	N
824	chr6	31327333	31327334	rs2523589	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (salicylic acid and derivatives)	61,583 European ancestry cases, 50,427 European ancestry controls	NA	6p21.33	HLA-B	rs2523589-T	0.495166	2E-8		0.044395193	[0.029-0.06] unit increase	Affymetrix [7288503] (imputed)	N
824	chr6	31327333	31327334	rs2523589	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.33		rs2523589-T	0.5109049999999999	2E-54		1.0677866	[1.06-1.08]	Affymetrix, Illumina [9851866] (imputed)	N
824	chr6	31327399	31327400	rs2523587	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	6p21.33	Intergenic	rs2523587-T	0.3377	3E-8	(MTAG)	0.0105	[0.0068-0.0142] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
824	chr6	31327659	31327660	rs1811197	27157822	Hallberg P	2016-05-03	Lancet Diabetes Endocrinol	Genetic variants associated with antithyroid drug-induced agranulocytosis: a genome-wide association study in a European population.	Non-chemotherapy drug induced agranulocytosis	222 European ancestry cases, 12 cases, 5,170 European ancestry controls	NA	6p21.33	NR	rs1811197-?	NR	9E-13	(adjusted for rs114291795)	2.4	[1.89-3.06]	Illumina [9380034] (imputed)	N
824	chr6	31327668	31327669	rs116812356	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	6p21.33	HLA-B	rs116812356-C	0.084787	1E-13		0.029957736	[0.022-0.038] unit increase	Affymetrix [93095623] (imputed)	N
824	chr6	31327700	31327701	rs9378249	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p21.33	NR	rs9378249-T	0.936677	4E-192				Affymetrix, Illumina [17210439] (imputed)	N
824	chr6	31327700	31327701	rs9378249	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	6p21.33	NR	rs9378249-T	0.935134	6E-196		0.116523	[0.11-0.12] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
824	chr6	31327700	31327701	rs9378249	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	6p21.33	HLA-B	rs9378249-G	0.0655	1E-53		0.112675	[0.098-0.127] unit decrease	Affymetrix [~ 2500000] (imputed)	N
824	chr6	31327700	31327701	rs9378249	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	6p21.33	HLA-B	rs9378249-G	0.0649	7E-35		0.08896168	[0.075-0.103] unit increase	Affymetrix [~ 2500000] (imputed)	N
824	chr6	31327700	31327701	rs9378249	21254220	Jiang Y	2011-02-01	Genet Epidemiol	Propensity score-based nonparametric test revealing genetic variants underlying bipolar disorder.	Bipolar disorder	1,868 European ancestry cases, 2,938 European ancestry controls	NA	6p21.33	NR	rs9378249-?	NR	1E-8	(addtive)			Affymetrix [NR]	N
824	chr6	31327722	31327723	rs2596477	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p21.33	NR	rs2596477-A	0.124	2E-14	(IFNAR2_of_CD20p)			Illumina [5084123] (imputed)	N
824	chr6	31327741	31327742	rs116010992	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in IDL	115,082 European ancestry individuals	NA	6p21.33		rs116010992-G	0.944836	2E-8		0.0511498	[0.033-0.069] unit increase	NR [11722792] (imputed)	N
824	chr6	31327741	31327742	rs116010992	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in IDL	115,082 European ancestry individuals	NA	6p21.33		rs116010992-G	0.944836	7E-9		0.0521223	[0.034-0.07] unit increase	NR [11722792] (imputed)	N
824	chr6	31327741	31327742	rs116010992	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in IDL	115,082 European ancestry individuals	NA	6p21.33		rs116010992-G	0.944836	7E-9		0.0521034	[0.034-0.07] unit increase	NR [11722792] (imputed)	N
824	chr6	31327756	31327757	rs28695590	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs28695590-C	NR	1E-9		0.0254929	[0.017-0.034] unit increase	Affymetrix [323858] (imputed)	N
824	chr6	31327756	31327757	rs28695590	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs28695590-C	NR	2E-9		0.0254506	[0.017-0.034] unit increase	Affymetrix [127266] (imputed)	N
824	chr6	31327894	31327895	rs2523583	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	6p21.33	XXbac-BPG248L24.12	rs2523583-A	0.7315	5E-7		0.0528	[0.032-0.073] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
824	chr6	31327904	31327905	rs7767033	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p21.33		rs7767033-C	0.911783	6E-11		0.0460216	[0.032-0.06] unit decrease	NR [11722792] (imputed)	N
824	chr6	31327904	31327905	rs7767033	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p21.33		rs7767033-C	0.911783	3E-10		0.0446058	[0.031-0.058] unit increase	NR [11722792] (imputed)	N
824	chr6	31328516	31328517	rs2523579	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs2523579-T	NR	5E-20		0.0268404	[0.021-0.033] unit increase	Affymetrix [321016] (imputed)	N
824	chr6	31328516	31328517	rs2523579	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs2523579-T	NR	6E-23		0.0313944	[0.025-0.038] unit increase	Affymetrix [323123] (imputed)	N
824	chr6	31328541	31328542	rs2523578	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.33	XXbac-BPG248L24.12	rs2523578-A	0.735	6E-12		0.0561	[0.04-0.072] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
824	chr6	31328755	31328756	rs9266289	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.33	NR	rs9266289-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
824	chr6	31328885	31328886	rs7772305	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs7772305-G	NR	1E-17		0.0277083	[0.021-0.034] unit decrease	Affymetrix [321016] (imputed)	N
824	chr6	31328885	31328886	rs7772305	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs7772305-G	NR	4E-10		0.0221253	[0.015-0.029] unit decrease	Affymetrix [323123] (imputed)	N
824	chr6	31328987	31328988	rs2523573	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	6p21.33	NR	rs2523573-C	0.083499	2E-9		0.077368595	[0.052-0.103] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
824	chr6	31328987	31328988	rs2523573	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	6p21.33	NR	rs2523573-C	0.083499	3E-11		0.07532035	[0.053-0.098] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
824	chr6	31329028	31329029	rs114029601	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p21.33		rs114029601-?	NR	2E-13		0.0823935	[0.06-0.104] unit increase	Affymetrix [20259828] (imputed)	N
824	chr6	31329028	31329029	rs114029601	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs114029601-T	0.024	1E-175	(alpha-2-macroglobulin receptor-associated protein, LRPAP1.3640.14.3)	2.11	[1.97-2.25] unit increase	Affymetrix [10572788] (imputed)	N
824	chr6	31329028	31329029	rs114029601	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs114029601-T	0.024	1E-132	(alpha-2-macroglobulin receptor-associated protein, LRPAP1.8829.4.3)	1.88	[1.72-2.04] unit increase	Affymetrix [10572788] (imputed)	N
824	chr6	31329091	31329092	rs7772614	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs7772614-A	NR	2E-17		0.0245966	[0.019-0.03] unit decrease	Affymetrix [319769] (imputed)	N
824	chr6	31329091	31329092	rs7772614	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs7772614-A	NR	4E-16		0.0235888	[0.018-0.029] unit decrease	Affymetrix [319769] (imputed)	N
824	chr6	31329091	31329092	rs7772614	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs7772614-A	NR	9E-15		0.0224619	[0.017-0.028] unit increase	Affymetrix [321016] (imputed)	N
824	chr6	31329091	31329092	rs7772614	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs7772614-A	NR	3E-22		0.0306127	[0.024-0.037] unit increase	Affymetrix [323123] (imputed)	N
824	chr6	31329091	31329092	rs7772614	32358547	Persyn E	2020-05-01	Nat Commun	Genome-wide association study of MRI markers of cerebral small vessel disease in 42,310 participants.	White matter integrity (mean diffusivity)	17,467 European ancestry individuals	NA	6p21.33	HLA-B, HLA-S	rs7772614-A	0.379354	8E-10		0.272022	[0.19-0.36] unit decrease	Affymetrix [NR] (imputed)	N
824	chr6	31329134	31329135	rs2428493	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.33		rs2428493-C	0.59	3E-29				Affymetrix [10369434] (imputed)	N
824	chr6	31329134	31329135	rs2428493	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p21.33		rs2428493-C	0.59	2E-11				Affymetrix [10369434] (imputed)	N
824	chr6	31329134	31329135	rs2428493	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs2428493-A	NR	1E-8		0.0162701	[0.011-0.022] unit increase	Affymetrix [319769] (imputed)	N
824	chr6	31329134	31329135	rs2428493	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs2428493-A	NR	2E-8		0.0160422	[0.01-0.022] unit increase	Affymetrix [319769] (imputed)	N
824	chr6	31329134	31329135	rs2428493	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs2428493-A	NR	3E-8		0.0172826	[0.011-0.023] unit decrease	Affymetrix [323123] (imputed)	N
824	chr6	31329134	31329135	rs2428493	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs2428493-A	NR	4E-8		0.0158728	[0.01-0.022] unit increase	Affymetrix [321169] (imputed)	N
824	chr6	31329290	31329291	rs2596544	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs2596544-A	NR	4E-11		0.0250182	[0.018-0.032] unit decrease	Affymetrix [323858] (imputed)	N
824	chr6	31329290	31329291	rs2596544	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs2596544-A	NR	2E-10		0.0239529	[0.017-0.031] unit decrease	Affymetrix [127266] (imputed)	N
824	chr6	31329290	31329291	rs2596544	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.33	NR	rs2596544-?	NR	7E-14				Affymetrix [~ 8270000] (imputed)	N
824	chr6	31329364	31329365	rs2428491	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs2428491-T	NR	7E-9		0.018086	[0.012-0.024] unit decrease	Affymetrix [323123] (imputed)	N
824	chr6	31329364	31329365	rs2428491	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs2428491-T	NR	3E-8		0.0160184	[0.01-0.022] unit increase	Affymetrix [321169] (imputed)	N
824	chr6	31329465	31329466	rs76518703	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.33		rs76518703-G	0.051012999999999975	4E-21		1.0960608	[1.08-1.11]	Affymetrix, Illumina [9851866] (imputed)	N
824	chr6	31329477	31329478	rs62396280	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p21.33		rs62396280-G	0.938983	7E-13		0.0589889	[0.043-0.075] unit increase	NR [11722792] (imputed)	N
824	chr6	31329477	31329478	rs62396280	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p21.33		rs62396280-G	0.938983	3E-13		0.0597272	[0.044-0.076] unit increase	NR [11722792] (imputed)	N
824	chr6	31329477	31329478	rs62396280	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	6p21.33		rs62396280-G	0.938983	5E-13		0.0604292	[0.044-0.077] unit increase	NR [11722792] (imputed)	N
824	chr6	31329641	31329642	rs2596547	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MICB	5,339 Icelandic ancestry individuals	NA	6p21.33		rs2596547-T	0.08274	1E-46		0.447301	[0.39-0.51] unit decrease	Illumina [7506463] (imputed)	N
824	chr6	31329690	31329691	rs2523571	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Sjogren's syndrome	1,296 European ancestry cases, 482,717 European ancestry controls, 303 East Asian ancestry cases, 175,599 East Asian ancestry controls	NA	6p21.33		rs2523571-A	NR	6E-28		0.709	[0.58-0.84] unit increase	Affymetrix, Illumina [25844664] (imputed)	N
824	chr6	31329733	31329734	rs2523570	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs2523570-T	NR	1E-9		0.0207915	[0.014-0.027] unit increase	Affymetrix [321114] (imputed)	N
824	chr6	31329733	31329734	rs2523570	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	HLA-B, XXbac-BPG248L24.12, HLA-C, DHFRP2, RNU6-283P	rs2523570-T	0.1732125	3E-22	(EA, MHC class I polypeptide-related sequence A)	0.5698	[0.46-0.68] unit increase	Affymetrix [509946]	N
824	chr6	31330014	31330015	rs2523567	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	DHFRP2	rs2523567-G	NR	1E-8		0.019102	[0.013-0.026] unit decrease	Affymetrix [321169] (imputed)	N
824	chr6	31330617	31330618	rs2523562	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	6p21.33		rs2523562-C	0.75	5E-23				Affymetrix [10369434] (imputed)	N
824	chr6	31330617	31330618	rs2523562	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	6p21.33	DHFRP2	rs2523562-T	0.248438	2E-53		0.043959104	[0.038-0.05] unit decrease	Affymetrix [93095623] (imputed)	N
824	chr6	31330617	31330618	rs2523562	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p21.33	NR	rs2523562-T	0.231793	1E-216				Affymetrix, Illumina [23467995] (imputed)	N
824	chr6	31330617	31330618	rs2523562	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	6p21.33	NR	rs2523562-T	0.245752	2E-218		0.068474	[0.064-0.073] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
824	chr6	31330695	31330696	rs2523561	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	6p21.33		rs2523561-T	0.0841863	4E-21		0.22455621	[0.18-0.27] unit increase	Illumina [13427135] (imputed)	N
824	chr6	31330787	31330788	rs9266329	34642315	Ferreiro-Iglesias A	2021-10-12	Nat Commun	Germline determinants of humoral immune response to HPV-16 protect against oropharyngeal cancer.	Human papilloma virus 16 positive oropharyngeal cancer	1,078 European ancestry cases, 5,256 European ancestry controls	NA	6p21.33		rs9266329-A	NR	1E-12		0.6064		Illumina [7574753] (imputed)	N
824	chr6	31330968	31330969	rs2523559	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	145,505 East Asian ancestry individuals	NA	6p21.33		rs2523559-A	0.856226	1E-8		0.0270292	[0.018-0.036] unit decrease	Illumina [13477770] (imputed)	N
824	chr6	31331036	31331037	rs2523558	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	DHFRP2	rs2523558-G	NR	5E-17		0.0239075	[0.018-0.029] unit decrease	Affymetrix [319769] (imputed)	N
824	chr6	31331036	31331037	rs2523558	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	DHFRP2	rs2523558-G	NR	1E-15		0.022827	[0.017-0.028] unit decrease	Affymetrix [319769] (imputed)	N
824	chr6	31331036	31331037	rs2523558	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	DHFRP2	rs2523558-G	NR	2E-18		0.025264	[0.02-0.031] unit decrease	Affymetrix [321169] (imputed)	N
824	chr6	31331256	31331257	rs2523557	26190474	Dai Y	2015-07-20	Sci Rep	Performance of genetic risk factors in prediction of trichloroethylene induced hypersensitivity syndrome.	Trichloroethylene-induced hypersensitivity syndrome	98 Han Chinese ancestry cases, 98 Han Chinese ancestry trichloroethylene-tolerant controls	Up to 74 Han Chinese ancestry cases, up to 1,661 Han Chinese ancestry trichloroethylene-tolerant controls	6p21.33	HLA-B, MICA	rs2523557-C	0.13	9E-35		7.33	[5.34-10.07]	Illumina [1392644]	N
824	chr6	31331499	31331500	rs4959062	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	DHFRP2	rs4959062-G	NR	7E-12		0.0197814	[0.014-0.025] unit decrease	Affymetrix [321016] (imputed)	N
824	chr6	31331515	31331516	rs9266344	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antithrombotic agents)	67,653 European ancestry cases, 85,986 European ancestry controls, 54,220 East Asian ancestry cases, 124,506 East Asian ancestry controls	NA	6p21.33		rs9266344-C	NR	1E-15		0.0792	[0.06-0.099] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
824	chr6	31331697	31331698	rs4959063	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol minus HDL-C levels	115,082 European ancestry individuals	NA	6p21.33		rs4959063-C	0.79261	4E-9		0.0298904	[0.02-0.04] unit decrease	NR [11722792] (imputed)	N
824	chr6	31331697	31331698	rs4959063	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Remnant cholesterol (non-HDL, non-LDL -cholesterol)	115,082 European ancestry individuals	NA	6p21.33		rs4959063-C	0.79261	8E-10		0.0312509	[0.021-0.041] unit decrease	NR [11722792] (imputed)	N
824	chr6	31331697	31331698	rs4959063	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in IDL	115,082 European ancestry individuals	NA	6p21.33		rs4959063-C	0.79261	2E-8		0.0277784	[0.018-0.037] unit decrease	NR [11722792] (imputed)	N
824	chr6	31331697	31331698	rs4959063	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	6p21.33		rs4959063-C	0.79261	1E-9		0.0304695	[0.021-0.04] unit decrease	NR [11722792] (imputed)	N
824	chr6	31331697	31331698	rs4959063	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	6p21.33		rs4959063-C	0.79261	2E-10		0.0327736	[0.023-0.043] unit decrease	NR [11722792] (imputed)	N
824	chr6	31331697	31331698	rs4959063	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	6p21.33		rs4959063-C	0.79261	2E-10		0.0324692	[0.022-0.042] unit decrease	NR [11722792] (imputed)	N
824	chr6	31331697	31331698	rs4959063	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small LDL particles	115,082 European ancestry individuals	NA	6p21.33		rs4959063-C	0.79261	1E-8		0.0290147	[0.019-0.039] unit decrease	NR [11722792] (imputed)	N
824	chr6	31331697	31331698	rs4959063	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium LDL particles	115,082 European ancestry individuals	NA	6p21.33		rs4959063-C	0.79261	2E-8		0.0287151	[0.019-0.039] unit decrease	NR [11722792] (imputed)	N
824	chr6	31331697	31331698	rs4959063	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large LDL particles	115,082 European ancestry individuals	NA	6p21.33		rs4959063-C	0.79261	6E-10		0.0315332	[0.022-0.042] unit decrease	NR [11722792] (imputed)	N
824	chr6	31331697	31331698	rs4959063	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of LDL particles	115,082 European ancestry individuals	NA	6p21.33		rs4959063-C	0.79261	1E-9		0.0312676	[0.021-0.041] unit decrease	NR [11722792] (imputed)	N
824	chr6	31331697	31331698	rs4959063	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium VLDL	115,082 European ancestry individuals	NA	6p21.33		rs4959063-C	0.79261	2E-9		0.0304401	[0.021-0.04] unit decrease	NR [11722792] (imputed)	N
824	chr6	31331697	31331698	rs4959063	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in VLDL	115,082 European ancestry individuals	NA	6p21.33		rs4959063-C	0.79261	7E-11		0.0332965	[0.023-0.043] unit decrease	NR [11722792] (imputed)	N
824	chr6	31331697	31331698	rs4959063	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	6p21.33		rs4959063-C	0.79261	1E-8		0.0281437	[0.018-0.038] unit decrease	NR [11722792] (imputed)	N
824	chr6	31331697	31331698	rs4959063	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	6p21.33		rs4959063-C	0.79261	2E-10		0.0323143	[0.022-0.042] unit decrease	NR [11722792] (imputed)	N
824	chr6	31331697	31331698	rs4959063	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein B levels	115,082 European ancestry individuals	NA	6p21.33		rs4959063-C	0.79261	1E-9		0.0311161	[0.021-0.041] unit decrease	NR [11722792] (imputed)	N
824	chr6	31331828	31331829	rs2523554	33649182	Penova M	2021-03-01	Proc Natl Acad Sci U S A	Genome wide association study of HTLV-1-associated myelopathy/tropical spastic paraparesis in the Japanese population.	HTLV-1 associated myelopathy	731 Japanese ancestry cases, 846 Japanese ancestry controls	NA	6p21.33		rs2523554-C	0.11	3E-8		1.83	[1.48-2.27]	Illumina [126394]	N
824	chr6	31331884	31331886	rs9279167	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	6p21.33	DHFRP2	rs9279167-G	0.2829	2E-24		0.04621161	[0.037-0.055] unit decrease	Affymetrix [~ 2500000] (imputed)	N
824	chr6	31331953	31331954	rs2523552	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	6p21.33	DHFRP2	rs2523552-T	0.2263	1E-75		0.07846555	[0.07-0.087] unit decrease	Affymetrix [~ 2500000] (imputed)	N
824	chr6	31331976	31331977	rs2844583	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	High density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	6p21.33	HLA-B, MICA	rs2844583-?		9E-10		0.0428	[0.029-0.057] unit increase	Illumina [31500000] (imputed)	N
824	chr6	31332525	31332526	rs2844582	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	DHFRP2	rs2844582-T	NR	2E-10		0.022422	[0.016-0.029] unit increase	Affymetrix [321169] (imputed)	N
824	chr6	31332526	31332527	rs2523548	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6p21.33	DHFRP2	rs2523548-A	0.433296	1E-28		0.029001132	[0.024-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
824	chr6	31332738	31332739	rs9266359	25249183	Lu X	2014-09-23	Hum Mol Genet	Genome-wide association study in Chinese identifies novel loci for blood pressure and hypertension.	Systolic blood pressure	11,816 Han Chinese ancestry individuals	69,146 Han Chinese ancestry individuals	6p21.33	HLA-B	rs9266359-C	0.6	7E-6		0.44	[0.24-0.64] unit increase	Affymetrix, Illumina [2485448] (imputed)	N
824	chr6	31332738	31332739	rs9266359	25249183	Lu X	2014-09-23	Hum Mol Genet	Genome-wide association study in Chinese identifies novel loci for blood pressure and hypertension.	Diastolic blood pressure	11,816 Han Chinese ancestry individuals	69,146 Han Chinese ancestry individuals	6p21.33	HLA-B	rs9266359-C	0.6	2E-7		0.29	[0.17-0.41] unit increase	Affymetrix, Illumina [2485448] (imputed)	N
824	chr6	31332918	31332919	rs9266361	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (salicylic acid and derivatives)	41,461 East Asian ancestry cases, 137,265 East Asian ancestry controls	NA	6p21.33		rs9266361-T	0.812543574	5E-17		0.09066886	[0.07-0.112] unit decrease	Illumina [13429980] (imputed)	N
824	chr6	31332918	31332919	rs9266361	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	6p21.33		rs9266361-T	0.812543574	4E-14		0.07905273	[0.059-0.1] unit decrease	Illumina [13134967] (imputed)	N
824	chr6	31332918	31332919	rs9266361	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antithrombotic agents)	54,220 East Asian ancestry cases, 124,506 East Asian ancestry controls	NA	6p21.33		rs9266361-T	0.812543574	2E-16		0.08336314	[0.064-0.103] unit decrease	Illumina [13429980] (imputed)	N
824	chr6	31332918	31332919	rs9266361	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	DHFRP2	rs9266361-T	NR	1E-16		0.026028	[0.02-0.032] unit decrease	Affymetrix [323123] (imputed)	N
824	chr6	31332918	31332919	rs9266361	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.33		rs9266361-T	0.37995999999999996	5E-8		1.0236442	[1.01-1.03]	Affymetrix, Illumina [9851866] (imputed)	N
824	chr6	31332919	31332920	rs2523546	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Squamous cell lung carcinoma	8,350 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	6p21.33	NR	rs2523546-A	NR	9E-8		1.24	[1.14-1.34]	NR [NR] (imputed)	N
824	chr6	31333094	31333095	rs2428490	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	DHFRP2	rs2428490-A	NR	5E-10		0.0232656	[0.016-0.031] unit decrease	Affymetrix [127266] (imputed)	N
824	chr6	31333102	31333103	rs140949683	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GZMB	5,361 Icelandic ancestry individuals	NA	6p21.33		rs140949683-G	0.1074	3E-33		0.361549	[0.3-0.42] unit increase	Illumina [7506463] (imputed)	N
824	chr6	31333443	31333444	rs62395421	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	6p21.33	RNU6-283P	rs62395421-A	0.0803	2E-15		0.05211951	[0.039-0.065] unit decrease	Affymetrix [~ 2500000] (imputed)	N
824	chr6	31333962	31333963	rs2844578	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	DHFRP2	rs2844578-C	NR	3E-11		0.0246412	[0.017-0.032] unit decrease	Affymetrix [323858] (imputed)	N
824	chr6	31334863	31334864	rs6457402	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	DHFRP2	rs6457402-T	NR	1E-11		0.0242388	[0.017-0.031] unit decrease	Affymetrix [321016] (imputed)	N
824	chr6	31334944	31334945	rs2844575	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2844575-T	0.536322	3E-9		0.0243122	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
824	chr6	31334944	31334945	rs2844575	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	6p21.33		rs2844575-T	0.536	2E-12				Affymetrix [10369434] (imputed)	N
824	chr6	31334944	31334945	rs2844575	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs2844575-T	0.536	4E-31				Affymetrix [10369434] (imputed)	N
824	chr6	31334944	31334945	rs2844575	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.33		rs2844575-T	0.536	2E-53				Affymetrix [10369434] (imputed)	N
824	chr6	31334944	31334945	rs2844575	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	DHFRP2	rs2844575-C	NR	1E-11		0.0207917	[0.015-0.027] unit decrease	Affymetrix [323123] (imputed)	N
824	chr6	31335335	31335336	rs17193122	26151496	Chen PL	2015-07-07	Nat Commun	Genetic determinants of antithyroid drug-induced agranulocytosis by human leukocyte antigen genotyping and genome-wide association study.	Thionamide-induced agranulocytosis in Graves' disease	21 East Asian ancestry cases with agranulocytosis, 662 East Asian ancestry cases without agranulocytosis	21 East Asian ancestry cases with agranulocytosis, 546 East Asian ancestry cases without agranulocytosis	6p21.33	HLA-B*38:02	rs17193122-A	0.047	4E-27	(trend)	9.59	[5.78-15.90] (allelic)	Affymetrix [522980]	N
824	chr6	31335790	31335791	rs57989216	31219150	Ekenberg C	2019-06-13	J Infect Dis	Single nucleotide polymorphisms in HLA alleles are associated with HIV-1 viral load in demographically diverse, ART-naive participants from the START trial.	Pre-treatment viral load in HIV-1 infection	1,398 European ancestry individuals, 572 Black individuals, 418 Hispanic individuals, 13 Asian ancestry individuals, 39 individuals	NA	6p21.33	HLA-B, MIR6891	rs57989216-A	0.053	7E-13		0.4	[0.28-0.52] unit decrease	Affymetrix [339439]	N
824	chr6	31335900	31335901	rs2922994	25569183	Vijai J	2015-01-08	Nat Commun	A genome-wide association study of marginal zone lymphoma shows association to the HLA region.	Marginal zone lymphoma	825 European ancestry cases, 6,221 European ancestry controls	456 European ancestry cases, 906 European ancestry controls	6p21.33	HLA-B, TCF19	rs2922994-G	0.113	2E-9		1.64	[1.39-1.92]	Illumina [611856]	N
824	chr6	31335996	31335997	rs146683910	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Iritis	2,616 European ancestry cases, 478,126 European ancestry controls, 110 East Asian ancestry cases, 175,543 East Asian ancestry controls	NA	6p21.33		rs146683910-T	NR	5E-191		1.8349	[1.71-1.96] unit increase	Affymetrix, Illumina [25844196] (imputed)	N
824	chr6	31336099	31336100	rs7743761	20062062	Reveille JD	2010-01-10	Nat Genet	Genome-wide association study of ankylosing spondylitis identifies non-MHC susceptibility loci.	Ankylosing spondylitis	2,053 European ancestry cases, 5,140 European ancestry controls	898 European ancestry cases, 1,518 European ancestry controls	6p21.33	MHC	rs7743761-?	NR	5E-304				Illumina [288662]	N
824	chr6	31336417	31336418	rs9266406	23001997	Hou S	2012-12-06	Arthritis Rheum	Identification of a susceptibility locus in STAT4 for Behcet's disease in Han Chinese in a genome-wide association study.	Behcet's disease	147 Han Chinese ancestry cases, 951 Han Chinese ancestry controls	554 Han Chinese ancestry cases, 1,159 Han Chinese ancestry controls	6p21.33	MICA, DHFRP2, MICB	rs9266406-?	.40	2E-10		2.29	[1.77-2.95]	Affymetrix [661736]	N
824	chr6	31337145	31337146	rs2853989	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of granulocytes	170,223 European ancestry individuals	NA	6p21.33	DHFRP2, RNU6-283P	rs2853989-G	0.3405	3E-10		0.02321877	[0.016-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
824	chr6	31337206	31337207	rs2922996	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TEK	5,362 Icelandic ancestry individuals	NA	6p21.33		rs2922996-C	0.4661	1E-15		0.150071	[0.11-0.19] unit decrease	Illumina [7506463] (imputed)	N
824	chr6	31337206	31337207	rs2922996	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Angiopoietin-1 receptor levels	21,758 European ancestry individuals	9,173 individuals	6p21.33		rs2922996-C	0.46	2E-101		0.1892	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
824	chr6	31337210	31337211	rs9266428	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	6p21.33	DHFRP2, RNU6-283P	rs9266428-A	0.1804	9E-36		0.05778517	[0.049-0.067] unit increase	Affymetrix [~ 2500000] (imputed)	N
824	chr6	31337210	31337211	rs9266428	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	6p21.33	DHFRP2, RNU6-283P	rs9266428-A	0.1804	3E-36		0.05807499	[0.049-0.067] unit increase	Affymetrix [~ 2500000] (imputed)	N
824	chr6	31338092	31338093	rs9266444	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	142,940 East Asian ancestry individuals	NA	6p21.33	NR	rs9266444-A	0.237855	2E-10		0.029197	[0.02-0.038] SD units increase	Affymetrix, Illumina [16289021] (imputed)	N
824	chr6	31338345	31338346	rs9501574	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	RNU6-283P	rs9501574-C	NR	1E-8		0.023019	[0.015-0.031] unit decrease	Affymetrix [323123] (imputed)	N
824	chr6	31338843	31338844	rs2853986	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	RNU6-283P	rs2853986-C	NR	8E-20		0.0399121	[0.031-0.048] unit decrease	Affymetrix [323858] (imputed)	N
824	chr6	31338843	31338844	rs2853986	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	RNU6-283P	rs2853986-C	NR	7E-18		0.037756	[0.029-0.046] unit decrease	Affymetrix [127266] (imputed)	N
824	chr6	31340074	31340075	rs2844559	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	AL671883.1	rs2844559-T	NR	2E-16		0.0350697	[0.027-0.043] unit increase	Affymetrix [323123] (imputed)	N
824	chr6	31340157	31340158	rs9266490	24326010	Xavier JM	2013-12-10	Ann Rheum Dis	FUT2: filling the gap between genes and environment in Behcet's disease?	Behcet's disease	292 Iranian ancestry cases, 294 Iranian ancestry controls	684 Iranian ancestry cases, 532 Iranian ancestry controls, 1,215 Turkish ancestry cases, 1,278 Turkish ancestry controls	6p21.33	HLA-B	rs9266490-G	0.279	2E-44	(Greater Middle Eastern)	2.73	[2.35-3.17]	Affymetrix [868254]	N
824	chr6	31340907	31340908	rs2263321	30566020	Fukaya E	2018-12-01	Circulation	Clinical and Genetic Determinants of Varicose Veins.	Varicose veins	9,577 British ancestry cases, 327,959 British ancestry controls	NA	6p21.33	NR	rs2263321-A	0.33	8E-9		0.091	[0.06-0.122] unit decrease	Affymetrix [10972371] (imputed)	N
824	chr6	31341492	31341493	rs9266520	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	AL671883.1	rs9266520-C	NR	6E-10		0.0193551	[0.013-0.025] unit increase	Affymetrix [323858] (imputed)	N
824	chr6	31341492	31341493	rs9266520	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	AL671883.1	rs9266520-C	NR	1E-8		0.0177737	[0.012-0.024] unit increase	Affymetrix [127266] (imputed)	N
824	chr6	31341655	31341656	rs9501380	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	AL671883.1	rs9501380-A	NR	4E-8		0.0310676	[0.02-0.042] unit decrease	Affymetrix [321016] (imputed)	N
824	chr6	31341770	31341771	rs2523517	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	6p21.33	FGFR3P1	rs2523517-A	0.3597	3E-17		0.0314362	[0.024-0.039] unit increase	Affymetrix [~ 2500000] (imputed)	N
824	chr6	31341886	31341887	rs2523515	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	6p21.33	FGFR3P1	rs2523515-A	0.3451	6E-13		0.02824211	[0.021-0.036] unit decrease	Affymetrix [~ 2500000] (imputed)	N
824	chr6	31342154	31342155	rs9501583	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.33		rs9501583-C	0.811	3E-18				Affymetrix [10369434] (imputed)	N
824	chr6	31342177	31342178	rs5013221	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.33		rs5013221-C	0.371	1E-26				Affymetrix [10369434] (imputed)	N
824	chr6	31342483	31342484	rs2523644	30226566	Yamada Y	2018-09-04	Int J Mol Med	Identification of 13 novel susceptibility loci for early-onset myocardial infarction, hypertension, or chronic kidney disease.	Myocardial infarction	1,152 Japanese ancestry cases, 5,774 Japanese ancestry controls	NA	6p21.33	Intergenic	rs2523644-G		5E-7		1.49		Illumina [31245]	N
824	chr6	31342780	31342781	rs2844551	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	AL671883.1	rs2844551-G	NR	2E-9		0.0207536	[0.014-0.028] unit decrease	Affymetrix [323123] (imputed)	N
824	chr6	31344915	31344916	rs116488202	25200001	Robinson PC	2014-09-08	Arthritis Rheumatol	Genetic dissection of acute anterior uveitis reveals similarities and differences in associations observed with ankylosing spondylitis.	Acute anterior uveitis (with or without ankylosing spondylitis)	238 European ancestry primary acute anterior uveitis cases, 1,199 European ancestry cases with acute anterior uveitis and ankylosing spondylitis, 9,564 European ancestry controls	NR	6p21.33	HLA-B	rs116488202-?	NR	1E-300		16.8	[15.0-18.7]	Illumina [at least 106525] (imputed)	N
824	chr6	31344915	31344916	rs116488202	23749187	Cortes A	2013-07-01	Nat Genet	Identification of multiple risk variants for ankylosing spondylitis through high-density genotyping of immune-related loci.	Ankylosing spondylitis	9,069 European ancestry cases, 1,550 East Asian ancestry cases, 13,578 European ancestry controls, 1,567 East Asian ancestry controls	NA	6p21.33	HLA-B*27	rs116488202-?	NR	1E-100	(EA)	46.0		Illumina [128935]	N
824	chr6	31345864	31345865	rs9266613	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.33		rs9266613-T	0.805	8E-22				Affymetrix [10369434] (imputed)	N
824	chr6	31346165	31346166	rs9266618	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	FGFR3P1	rs9266618-C	NR	4E-9		0.0286873	[0.019-0.038] unit decrease	Affymetrix [319769] (imputed)	N
824	chr6	31346165	31346166	rs9266618	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	FGFR3P1	rs9266618-C	NR	6E-9		0.0284984	[0.019-0.038] unit decrease	Affymetrix [319769] (imputed)	N
824	chr6	31346165	31346166	rs9266618	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	FGFR3P1	rs9266618-C	NR	2E-8		0.0280195	[0.018-0.038] unit decrease	Affymetrix [321169] (imputed)	N
824	chr6	31346444	31346445	rs2523627	31375628	Tengvall K	2019-08-02	Proc Natl Acad Sci U S A	Molecular mimicry between Anoctamin 2 and Epstein-Barr virus nuclear antigen 1 associates with multiple sclerosis risk.	Anti-anoctamin 2 antibody levels	11,936 European ancestry individuals	NA	6p21.33	NR	rs2523627-C	NR	9E-6		0.05	[0.026-0.074] unit increase	Illumina [615763]	N
824	chr6	31346553	31346554	rs4959072	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	FGFR3P1	rs4959072-C	NR	9E-10		0.0233595	[0.016-0.031] unit decrease	Affymetrix [323123] (imputed)	N
824	chr6	31346598	31346599	rs6909636	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	FGFR3P1	rs6909636-A	NR	1E-8		0.018048	[0.012-0.024] unit decrease	Affymetrix [323123] (imputed)	N
824	chr6	31346620	31346621	rs2442736	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	FGFR3P1	rs2442736-C	NR	2E-9		0.0200243	[0.014-0.027] unit decrease	Affymetrix [319769] (imputed)	N
824	chr6	31346620	31346621	rs2442736	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	FGFR3P1	rs2442736-C	NR	1E-10		0.0237826	[0.017-0.031] unit decrease	Affymetrix [323858] (imputed)	N
824	chr6	31346620	31346621	rs2442736	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	FGFR3P1	rs2442736-C	NR	5E-9		0.0194468	[0.013-0.026] unit decrease	Affymetrix [319769] (imputed)	N
824	chr6	31346620	31346621	rs2442736	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	FGFR3P1	rs2442736-C	NR	8E-10		0.022647	[0.015-0.03] unit decrease	Affymetrix [127266] (imputed)	N
824	chr6	31346652	31346653	rs2442735	27668658	Iotchkova V	2016-11-01	Nat Genet	Discovery and refinement of genetic loci associated with cardiometabolic risk using dense imputation maps.	Cardiometabolic and hematological traits	up to 35,981 European ancestry individuals	up to 102,505 European ancestry individuals	6p21.33	HLA-B	rs2442735-G		2E-46	(WBC)	0.01	[0.008-0.012] unit decrease	Affymetrix, Illumina [17000000] (imputed)	N
824	chr6	31346821	31346822	rs9266629	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	6p21.33	NR	rs9266629-?	NR	4E-9				Affymetrix [~ 8270000] (imputed)	N
824	chr6	31346821	31346822	rs9266629	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	6p21.33	NR	rs9266629-?		5E-11	(SFTPD)	0.2699	[NR] unit increase	Illumina [NR]	N
824	chr6	31346821	31346822	rs9266629	23144326	Kim DK	2012-11-09	Am J Respir Crit Care Med	Genome-wide association analysis of blood biomarkers in chronic obstructive pulmonary disease.	Chronic obstructive pulmonary disease-related biomarkers	Up to 1,951 European ancestry smokers	NA	6p21.33	FGFR3P	rs9266629-C	0.21	4E-10	(SP-D)			Illumina [588352]	N
824	chr6	31346977	31346978	rs9266634	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	FGFR3P1	rs9266634-A	NR	2E-15		0.0224814	[0.017-0.028] unit decrease	Affymetrix [319769] (imputed)	N
824	chr6	31346977	31346978	rs9266634	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	FGFR3P1	rs9266634-A	NR	2E-8		0.0175518	[0.011-0.024] unit decrease	Affymetrix [323858] (imputed)	N
824	chr6	31346977	31346978	rs9266634	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	FGFR3P1	rs9266634-A	NR	3E-14		0.0215569	[0.016-0.027] unit decrease	Affymetrix [319769] (imputed)	N
824	chr6	31346977	31346978	rs9266634	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	FGFR3P1	rs9266634-A	NR	2E-14		0.0219479	[0.016-0.028] unit decrease	Affymetrix [321169] (imputed)	N
824	chr6	31346977	31346978	rs9266634	28762467	Wadelius M	2017-08-01	Clin Pharmacol Ther	Sulfasalazine-Induced Agranulocytosis Is Associated With the Human Leukocyte Antigen Locus.	Sulfasalazine-induced agranulocytosis	36 European ancestry cases, 5,170 European ancestry untreated controls	NA	6p21.33	intergenic	rs9266634-?	NR	3E-8		5.37	[2.97-9.69]	Illumina [9380034] (imputed)	N
824	chr6	31346977	31346978	rs9266634	28762467	Wadelius M	2017-08-01	Clin Pharmacol Ther	Sulfasalazine-Induced Agranulocytosis Is Associated With the Human Leukocyte Antigen Locus.	Sulfasalazine-induced agranulocytosis	36 European ancestry cases, 5,170 European ancestry untreated controls	NA	6p21.33	HLA-B	rs9266634-?	NR	3E-8		5.37	[2.97-9.69]	Illumina [9380034] (imputed)	N
824	chr6	31347068	31347069	rs9266639	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DDR1	5,364 Icelandic ancestry individuals	NA	6p21.33		rs9266639-T	0.2296	1E-7		0.113803	[0.072-0.156] unit increase	Illumina [7506463] (imputed)	N
824	chr6	31347203	31347204	rs2844543	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	ZDHHC20P2	rs2844543-T	NR	3E-12		0.0196225	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
824	chr6	31347203	31347204	rs2844543	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	ZDHHC20P2	rs2844543-T	NR	4E-11		0.0185963	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
824	chr6	31347203	31347204	rs2844543	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	ZDHHC20P2	rs2844543-T	NR	4E-11		0.0186102	[0.013-0.024] unit decrease	Affymetrix [321016] (imputed)	N
824	chr6	31347203	31347204	rs2844543	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	ZDHHC20P2	rs2844543-T	NR	2E-16		0.0252366	[0.019-0.031] unit decrease	Affymetrix [323123] (imputed)	N
824	chr6	31347225	31347226	rs79815527	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28+ CD45RA+ CD8dim T cell %T cell	3,440 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs79815527-A	0.12032	3E-9		0.2753	[0.18-0.37] unit increase	Illumina [18357815] (imputed)	N
824	chr6	31347273	31347274	rs2844542	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	71,221 East Asian ancestry individuals	NA	6p21.33		rs2844542-G	0.354053	4E-8		0.024232	[0.016-0.033] unit increase	Illumina [13466143] (imputed)	N
824	chr6	31347450	31347451	rs2244020	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	ZDHHC20P2	rs2244020-G	NR	4E-13		0.0234399	[0.017-0.03] unit decrease	Affymetrix [323123] (imputed)	N
824	chr6	31347450	31347451	rs2244020	25102180	Ng MC	2014-08-07	PLoS Genet	Meta-analysis of genome-wide association studies in African Americans provides insights into the genetic architecture of type 2 diabetes.	Type 2 diabetes	8,284 African American cases, 15,543 African American controls	6,061 African American cases, 5,483 African American controls, 8,130 European ancestry cases, 38,987 European ancestry controls	6p21.33	HLA-B	rs2244020-G	0.69	7E-9		1.09	[1.06-1.13]	Affymetrix, Illumina [2579389] (imputed)	N
824	chr6	31347450	31347451	rs2244020	25102180	Ng MC	2014-08-07	PLoS Genet	Meta-analysis of genome-wide association studies in African Americans provides insights into the genetic architecture of type 2 diabetes.	Type 2 diabetes	8,284 African American cases, 15,543 African American controls	6,061 African American cases, 5,483 African American controls, 8,130 European ancestry cases, 38,987 European ancestry controls	6p21.33	HLA-B	rs2244020-G	0.69	1E-6	(AA)	1.11	[1.07-1.16]	Affymetrix, Illumina [2579389] (imputed)	N
824	chr6	31347797	31347798	rs4713460	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.33		rs4713460-G	0.739	7E-16				Affymetrix [10369434] (imputed)	N
824	chr6	31347797	31347798	rs4713460	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	ZDHHC20P2	rs4713460-A	NR	2E-8		0.019914	[0.013-0.027] unit increase	Affymetrix [323858] (imputed)	N
824	chr6	31347815	31347816	rs4713462	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	ZDHHC20P2	rs4713462-A	NR	3E-9		0.0207985	[0.014-0.028] unit decrease	Affymetrix [323123] (imputed)	N
824	chr6	31347815	31347816	rs4713462	32534018	Liu X	2020-06-10	Brain Behav Immun	Genetic factors underlying the bidirectional relationship between autoimmune and mental disorders - findings from a Danish population-based study.	Autoimmune traits	1,383 Danish ancestry cases, 62,656 Danish ancestry controls	NA	6p21.33	NR	rs4713462-A	0.29	2E-13		1.37	[1.26-1.49]	NR [7721839] (imputed)	N
824	chr6	31348039	31348040	rs2596570	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Tyrosine levels	114,913 European ancestry individuals	NA	6p21.33		rs2596570-T	0.834751	5E-9		0.0325088	[0.022-0.043] unit decrease	NR [11722792] (imputed)	N
824	chr6	31348364	31348365	rs4143332	23603763	Liu JZ	2013-06-01	Nat Genet	Dense genotyping of immune-related disease regions identifies nine new risk loci for primary sclerosing cholangitis.	Primary sclerosing cholangitis	3,789 European ancestry cases, 25,079 European ancestry controls	NA	6p21.33	HLA-B	rs4143332-?	NR	1E-250				Illumina [140322] (imputed)	N
824	chr6	31348376	31348377	rs9266677	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	ZDHHC20P2	rs9266677-A	NR	2E-8		0.0194816	[0.013-0.026] unit increase	Affymetrix [323123] (imputed)	N
824	chr6	31348518	31348519	rs4143333	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	6p21.33	MICA	rs4143333-G	0.12	2E-16	(conditional on rs2284174)	1.15	[NR]	Affymetrix, Illumina [6224355] (imputed)	N
824	chr6	31348518	31348519	rs4143333	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	6p21.33	HLA-C, MICA	rs4143333-G	NR	1E-9		0.186384	[0.13-0.25] unit decrease	Illumina [at least 950000] (imputed)	N
824	chr6	31349818	31349819	rs9266721	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.33		rs9266721-C	0.408	8E-27				Affymetrix [10369434] (imputed)	N
824	chr6	31349843	31349844	rs9295987	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CREB3L4	5,364 Icelandic ancestry individuals	NA	6p21.33		rs9295987-G	0.04402	4E-158		1.13632	[1.05-1.22] unit increase	Illumina [7506463] (imputed)	N
824	chr6	31349843	31349844	rs9295987	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	FGFR3P1	rs9295987-G	0.061	3E-69	(Cyclic AMP-responsive element-binding protein 3-like protein 4, CREB3L4.11308.8.3)	0.87	[0.77-0.97] unit increase	Affymetrix [10572788] (imputed)	N
824	chr6	31350302	31350303	rs2844535	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-S	rs2844535-G	NR	1E-11		0.023805	[0.017-0.031] unit decrease	Affymetrix [323858] (imputed)	N
824	chr6	31350302	31350303	rs2844535	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HLA-S	rs2844535-G	NR	3E-11		0.0233241	[0.016-0.03] unit decrease	Affymetrix [127266] (imputed)	N
824	chr6	31350703	31350704	rs1521	31050781	Zhao SX	2019-05-03	JAMA Netw Open	Assessment of Molecular Subtypes in Thyrotoxic Periodic Paralysis and Graves Disease Among Chinese Han Adults: A Population-Based Genome-Wide Association Study.	Thyrotoxic hypokalemic periodic paralysis and Graves disease	171 Han Chinese ancestry cases, 2,160 Han Chinese ancestry controls	362 Han Chinese ancestry cases, 1,089 Han Chinese ancestry controls	6p21.33	MICA/HLA-B	rs1521-?	0.81	4E-18		2.51	[2.02-3.13]	Illumina [2752055] (imputed)	N
824	chr6	31350703	31350704	rs1521	21841780	Chu X	2011-08-14	Nat Genet	A genome-wide association study identifies two new risk loci for Graves' disease.	Graves' disease	1,468 Chinese ancestry cases, 1,490 Chinese ancestry controls	3,994 Chinese ancestry cases, 3,510 Chinese ancestry controls	6p21.33	HLA-B	rs1521-T	0.79	2E-65		1.92	[1.78-2.08]	Illumina [486049]	N
824	chr6	31351053	31351054	rs17193507	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	683 Turkish ancestry cases, 1,721 Turkish ancestry controls	NA	6p21.33	HLA-B, MICA	rs17193507-?	NR	2E-18	(conditional on rs2844678, rs9262437 and rs61444472)			Illumina [4495750] (imputed)	N
824	chr6	31351053	31351054	rs17193507	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	286 European ancestry cases, 2,652 European ancestry controls, 76 Han Chinese ancestry cases, 889 Han Chinese ancestry controls, 46 South Asian ancestry cases, 501 South Asian ancestry controls, 683 Turkish ancestry cases, 1,721 Turkish ancestry controls	NA	6p21.33	HLA-B, MICA	rs17193507-?	NR	7E-30	(conditional on rs2844678 and rs12524487)	3.28	NR	Illumina [up to 4495750] (imputed)	N
824	chr6	31351211	31351212	rs9266745	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p21.33	HLA-B, MICA	rs9266745-G	0.17	2E-8	(Turkish)	1.87	[1.50-2.34]	Illumina [up to 547389]	N
824	chr6	31351521	31351522	rs3020582	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-S	rs3020582-A	NR	3E-32		0.0377962	[0.032-0.044] unit increase	Affymetrix [323123] (imputed)	N
824	chr6	31351529	31351530	rs2905715	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-S	rs2905715-C	NR	1E-12		0.0208764	[0.015-0.027] unit increase	Affymetrix [319769] (imputed)	N
824	chr6	31351529	31351530	rs2905715	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-S	rs2905715-C	NR	1E-10		0.0211485	[0.015-0.028] unit increase	Affymetrix [323858] (imputed)	N
824	chr6	31351529	31351530	rs2905715	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-S	rs2905715-C	NR	1E-12		0.020881	[0.015-0.027] unit increase	Affymetrix [319769] (imputed)	N
824	chr6	31351529	31351530	rs2905715	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HLA-S	rs2905715-C	NR	3E-10		0.0206892	[0.014-0.027] unit increase	Affymetrix [127266] (imputed)	N
824	chr6	31351529	31351530	rs2905715	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.33	HLA-S	rs2905715-C	NR	9E-10		0.0181976	[0.012-0.024] unit increase	Affymetrix [321114] (imputed)	N
824	chr6	31351529	31351530	rs2905715	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-S	rs2905715-C	NR	3E-8		0.0177635	[0.011-0.024] unit decrease	Affymetrix [323123] (imputed)	N
824	chr6	31351529	31351530	rs2905715	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HLA-S	rs2905715-C	NR	3E-13		0.0217768	[0.016-0.028] unit increase	Affymetrix [321169] (imputed)	N
824	chr6	31351548	31351549	rs3020581	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-S	rs3020581-G	NR	2E-14		0.0240767	[0.018-0.03] unit decrease	Affymetrix [323858] (imputed)	N
824	chr6	31351548	31351549	rs3020581	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HLA-S	rs3020581-G	NR	1E-12		0.0224897	[0.016-0.029] unit decrease	Affymetrix [127266] (imputed)	N
824	chr6	31351548	31351549	rs3020581	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HLA-S	rs3020581-G	NR	6E-18		0.0248167	[0.019-0.03] unit decrease	Affymetrix [321169] (imputed)	N
824	chr6	31351593	31351594	rs9266762	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-S	rs9266762-T	NR	2E-8		0.019515	[0.013-0.026] unit decrease	Affymetrix [319769] (imputed)	N
824	chr6	31351593	31351594	rs9266762	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-S	rs9266762-T	NR	4E-8		0.0191651	[0.012-0.026] unit increase	Affymetrix [321016] (imputed)	N
824	chr6	31351663	31351664	rs2507978	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	6p21.33	HLA-B, MICA	rs2507978-G	0.41	1E-10		1.035	[1.02-1.05]	Affymetrix, Illumina [8307659] (imputed)	N
824	chr6	31351674	31351675	rs9266766	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)(bidirectional)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.33		rs9266766-G	NR	2E-9				Affymetrix [7846216] (imputed)	N
824	chr6	31352039	31352040	rs2442749	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	6p21.33	HLA-S	rs2442749-C	0.292193	6E-13		0.018536638	[0.013-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
824	chr6	31352059	31352060	rs6920323	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.33	NR	rs6920323-T	NR	4E-6		0.022	unit decrease	Affymetrix [at least 7091467] (imputed)	N
824	chr6	31352059	31352060	rs6920323	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.33	NR	rs6920323-T	NR	2E-13		0.038	unit decrease	Affymetrix [at least 7091467] (imputed)	N
824	chr6	31352059	31352060	rs6920323	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.33	NR	rs6920323-T	0.812	3E-14	(EA)	0.044	unit decrease	Affymetrix [at least 7091467] (imputed)	N
824	chr6	31352059	31352060	rs6920323	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.33	NR	rs6920323-T	NR	2E-11		0.036	unit decrease	Affymetrix [at least 7091467] (imputed)	N
824	chr6	31352059	31352060	rs6920323	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.33	NR	rs6920323-T	0.812	4E-12	(EA)	0.042	unit decrease	Affymetrix [at least 7091467] (imputed)	N
824	chr6	31352112	31352113	rs9266772	23817569	Hinds DA	2013-06-30	Nat Genet	A genome-wide association meta-analysis of self-reported allergy identifies shared and allergy-specific susceptibility loci.	Self-reported allergy	53,862 European ancestry individuals	NA	6p21.33	MICA, HLA-C	rs9266772-C	0.1882	3E-12		0.104	[0.075-0.133] unit increase	Illumina [2400000] (imputed)	N
824	chr6	31352445	31352446	rs7775759	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-S	rs7775759-A	NR	1E-11		0.0216624	[0.015-0.028] unit decrease	Affymetrix [321016] (imputed)	N
824	chr6	31352630	31352631	rs7741091	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	6p21.33	RNU6-603P	rs7741091-?	NR	3E-26		0.0306	[0.026-0.036] unit increase	Affymetrix [5701386] (imputed)	N
824	chr6	31352630	31352631	rs7741091	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.33	HLA-S	rs7741091-A	0.6803	3E-7		0.0391	[0.024-0.054] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
824	chr6	31352630	31352631	rs7741091	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p21.33	MICA	rs7741091-A	0.6701	8E-8	(EA)	0.0202	[0.013-0.028] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
824	chr6	31352630	31352631	rs7741091	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p21.33	MICA	rs7741091-A	0.6701	2E-8	(EA,men)	0.0306	[0.02-0.041] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
824	chr6	31352693	31352694	rs56671953	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6p21.33	NR	rs56671953-?	NR	7E-9				Affymetrix [~ 8270000] (imputed)	N
824	chr6	31353170	31353171	rs2844531	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	315,284 European ancestry male individuals	NA	6p21.33	NR	rs2844531-A	0.8585	1E-30		0.0294	[0.024-0.034] unit increase	NR [~ 27400000] (imputed)	N
824	chr6	31353328	31353329	rs2596565	24532677	Bossini-Castillo L	2014-02-14	Ann Rheum Dis	A genome-wide association study of rheumatoid arthritis without antibodies against citrullinated peptides.	Rheumatoid arthritis (ACPA-negative)	1,148 European ancestry cases, 6,008 European ancestry controls	774 European ancestry cases, 1,079 European ancestry controls	6p21.33	MICA, HLA-B	rs2596565-?		9E-9		1.4	[NR]	Illumina [452367]	N
824	chr6	31353638	31353639	rs2523484	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-S	rs2523484-T	NR	9E-10		0.0200027	[0.014-0.026] unit increase	Affymetrix [323858] (imputed)	N
824	chr6	31353638	31353639	rs2523484	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HLA-S	rs2523484-T	NR	7E-9		0.01891	[0.013-0.025] unit increase	Affymetrix [127266] (imputed)	N
824	chr6	31353638	31353639	rs2523484	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-S	rs2523484-T	NR	3E-15		0.0253333	[0.019-0.032] unit decrease	Affymetrix [323123] (imputed)	N
824	chr6	31353638	31353639	rs2523484	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HLA-S	rs2523484-T	NR	3E-8		0.0164823	[0.011-0.022] unit increase	Affymetrix [321169] (imputed)	N
824	chr6	31353791	31353792	rs2523483	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.33	NR	rs2523483-T	0.939	3E-11	(conditional)	4.665	[4.53-4.8]	Illumina [11270530] (imputed)	N
824	chr6	31354181	31354182	rs6932730	23817571	Bonnelykke K	2013-06-30	Nat Genet	Meta-analysis of genome-wide association studies identifies ten loci influencing allergic sensitization.	Allergic sensitization	5,789 European ancestry cases, 10,056 European ancestry controls	6,114 European ancestry cases, 9,920 European ancestry controls	6p21.33	MICA, HLA-C, HLA-B, MICB	rs6932730-T	0.82	4E-8		1.14	[1.09-1.20]	Affymetrix, Illumina [~ 2500000] (imputed)	N
824	chr6	31354237	31354238	rs12524487	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	286 European ancestry cases, 2,652 European ancestry controls, 76 Han Chinese ancestry cases, 889 Han Chinese ancestry controls, 46 South Asian ancestry cases, 501 South Asian ancestry controls, 683 Turkish ancestry cases, 1,721 Turkish ancestry controls	NA	6p21.33	HLA-B, MICA	rs12524487-?	NR	6E-38	(conditional on rs2844678)	3.12	NR	Illumina [up to 4495750] (imputed)	N
824	chr6	31354237	31354238	rs12524487	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	229 European ancestry cases, 1,088 European ancestry controls	NA	6p21.33	HLA-B, MICA	rs12524487-?	NR	7E-20				Illumina [4388215] (imputed)	N
824	chr6	31354237	31354238	rs12524487	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p21.33	HLA-B, MICA	rs12524487-T	0.07	3E-15	(EA)	3.78	[2.66-5.36]	Illumina [up to 547389]	N
824	chr6	31354237	31354238	rs12524487	23830517	Saruhan-Direskeneli G	2013-07-03	Am J Hum Genet	Identification of multiple genetic susceptibility loci in Takayasu arteritis.	Takayasu arteritis	305 Turkish ancestry cases, 106 European ancestry cases, 483 Turkish ancestry controls, 553 European ancestry controls	NA		HLA-B, MICA	rs12524487-T	0.04	6E-16		3.29		Illumina [at least 124312]	N
824	chr6	31354559	31354560	rs13437082	28031287	Sasayama D	2016-11-26	Hum Mol Genet	Genome-wide quantitative trait loci mapping of the human cerebrospinal fluid proteome.	Cerebrospinal fluid biomarker levels	133 Japanese ancestry individuals.	NA	6p21.33	NR	rs13437082-?	NR	1E-10	(MHC class I polypeptide-related sequence A)			Illumina [514227]	N
824	chr6	31354559	31354560	rs13437082	19343178	Soranzo N	2009-04-03	PLoS Genet	Meta-analysis of genome-wide scans for human adult stature identifies novel Loci and associations with measures of skeletal frame size.	Height	12,611 European ancestry individuals	7,187 European ancestry individuals	6p21.33	HLA-B	rs13437082-?	0.13	5E-8		0.07	[0.04-0.10] s.d. decrease	Illumina [229216]	N
824	chr6	31355118	31355119	rs13437088	23143594	Tsoi LC	2012-12-01	Nat Genet	Identification of 15 new psoriasis susceptibility loci highlights the role of innate immunity.	Psoriasis	10,588 European ancestry cases, 22,806 European ancestry controls	NA	6p21.33	HLA-B, HLA-C, MICA	rs13437088-T	0.25	3E-40	(conditioned on rs4406273)	1.32		Illumina [111236] (imputed)	N
824	chr6	31356529	31356530	rs72657657	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG181B23.7	rs72657657-A	NR	4E-13		0.0276575	[0.02-0.035] unit decrease	Affymetrix [323123] (imputed)	N
824	chr6	31357915	31357916	rs3128983	33002439	Jin G	2020-10-01	Lancet Oncol	Genetic risk, incident gastric cancer, and healthy lifestyle: a meta-analysis of genome-wide association studies and prospective cohort study.	Gastric cancer	10,254 Han Chinese ancestry cases, 10,914 Han Chinese ancestry controls	NA	6p21.33	NR	rs3128983-T	0.62	4E-6		0.9	NR	Affymetrix, Illumina [6957974] (imputed)	N
824	chr6	31358267	31358268	rs189117034	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	6p21.33		rs189117034-G	0.012714	4E-6		0.14073	[0.081-0.2] unit decrease	Affymetrix [15580782] (imputed)	N
824	chr6	31358942	31358943	rs9266791	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG181B23.7	rs9266791-C	NR	9E-16		0.0226999	[0.017-0.028] unit increase	Affymetrix [319769] (imputed)	N
824	chr6	31358942	31358943	rs9266791	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG181B23.7	rs9266791-C	NR	5E-10		0.0195742	[0.013-0.026] unit increase	Affymetrix [323858] (imputed)	N
824	chr6	31358942	31358943	rs9266791	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG181B23.7	rs9266791-C	NR	5E-15		0.0220951	[0.017-0.028] unit increase	Affymetrix [319769] (imputed)	N
824	chr6	31358942	31358943	rs9266791	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	XXbac-BPG181B23.7	rs9266791-C	NR	7E-9		0.0181935	[0.012-0.024] unit increase	Affymetrix [127266] (imputed)	N
824	chr6	31358942	31358943	rs9266791	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG181B23.7	rs9266791-C	NR	4E-9		0.0165754	[0.011-0.022] unit decrease	Affymetrix [321016] (imputed)	N
824	chr6	31358942	31358943	rs9266791	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG181B23.7	rs9266791-C	NR	5E-14		0.0232092	[0.017-0.029] unit decrease	Affymetrix [323123] (imputed)	N
824	chr6	31358942	31358943	rs9266791	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG181B23.7	rs9266791-C	NR	7E-15		0.0222285	[0.017-0.028] unit increase	Affymetrix [321169] (imputed)	N
824	chr6	31358954	31358955	rs9348866	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG181B23.7	rs9348866-T	NR	5E-10		0.0179264	[0.012-0.024] unit increase	Affymetrix [319769] (imputed)	N
824	chr6	31358954	31358955	rs9348866	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG181B23.7	rs9348866-T	NR	3E-9		0.0188961	[0.013-0.025] unit increase	Affymetrix [323858] (imputed)	N
824	chr6	31358954	31358955	rs9348866	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG181B23.7	rs9348866-T	NR	4E-9		0.0169345	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
824	chr6	31358954	31358955	rs9348866	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	XXbac-BPG181B23.7	rs9348866-T	NR	3E-8		0.0176499	[0.011-0.024] unit increase	Affymetrix [127266] (imputed)	N
824	chr6	31358954	31358955	rs9348866	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG181B23.7	rs9348866-T	NR	8E-11		0.0186692	[0.013-0.024] unit decrease	Affymetrix [321016] (imputed)	N
824	chr6	31358954	31358955	rs9348866	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG181B23.7	rs9348866-T	NR	3E-16		0.0256147	[0.019-0.032] unit decrease	Affymetrix [323123] (imputed)	N
824	chr6	31358954	31358955	rs9348866	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG181B23.7	rs9348866-T	NR	4E-9		0.0170756	[0.011-0.023] unit increase	Affymetrix [321169] (imputed)	N
824	chr6	31359160	31359165	rs71699779	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	6p21.33	XXbac-BPG181B23.7	rs71699779-C	0.069883	9E-37		0.057562444	[0.049-0.066] unit increase	Affymetrix [93095623] (imputed)	N
824	chr6	31360094	31360095	rs2596517	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG181B23.7	rs2596517-G	NR	7E-14		0.0296528	[0.022-0.037] unit increase	Affymetrix [323123] (imputed)	N
824	chr6	31360254	31360255	rs7751505	23449627	Cousminer DL	2013-02-27	Hum Mol Genet	Genome-wide association and longitudinal analyses reveal genetic loci linking pubertal height growth, pubertal timing and childhood adiposity.	Pubertal anthropometrics	up to 5,043 European ancestry males, up to 5,756 European ancestry females	NA	6p21.33	MICA, VARS2	rs7751505-C	0.28	4E-6	(Pubertal growth)	0.07	[0.041-0.099] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
824	chr6	31360601	31360602	rs116562707	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Naive CD8+ T cell %T cell	3,427 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs116562707-G	0.0186	3E-9		0.3952	[0.27-0.53] unit increase	Illumina [18349913] (imputed)	N
824	chr6	31360601	31360602	rs116562707	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28+ CD45RA+ CD8+ T cell %T cell	3,440 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs116562707-G	0.01868	4E-9		0.4024	[0.27-0.54] unit increase	Illumina [18357815] (imputed)	N
824	chr6	31360643	31360644	rs28359827	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.33	NR	rs28359827-A	0.077	2E-71	(conditional)	2.916	[2.8-3.03]	Illumina [11270530] (imputed)	N
824	chr6	31361986	31361987	rs35026345	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	CAG-81 sp000435795 abundance in stool	5,959 Finnish ancestry individuals	NA	6p21.33		rs35026345-T	0.318743	2E-8		0.100796	[0.065-0.136] unit decrease	Illumina [7980478] (imputed)	N
824	chr6	31362264	31362265	rs28366119	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Keratinocyte cancer (MTAG)	at least 18,538 European ancestry cases, at least 340,302 European ancestry controls	NA	6p21.33	ERG	rs28366119-T	0.939044	4E-11		1.14	[1.10-1.19]	Affymetrix [7600000] (imputed)	N
824	chr6	31362309	31362310	rs16899524	23417110	Tin A	2013-02-16	Hum Genet	Genome-wide association study identified the human leukocyte antigen region as a novel locus for plasma beta-2 microglobulin.	Beta-2 microglubulin plasma levels	6,728 European ancestry individuals		6p21.33	HLA-B	rs16899524-C	0.93	1E-8		0.04	[0.026-0.054] unit increase	Affymetrix [2500000] (imputed)	N
824	chr6	31362881	31362882	rs183809241	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pneumonia	16,887 European ancestry cases, 463,412 European ancestry controls, 7,423 East Asian ancestry cases, 171,303 East Asian ancestry controls	NA	6p21.33		rs183809241-C	NR	9E-16		0.7693	[0.58-0.96] unit increase	Affymetrix, Illumina [25843326] (imputed)	N
824	chr6	31362940	31362941	rs142973694	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	IgA levels	16,883 Icelandic ancestry individuals	2,151 Swedish ancestry individuals	6p21.33	MICA	rs142973694-A	0.0655	7E-10		0.13	NR SD units increase	Illumina [21568490] (imputed)	N
824	chr6	31363025	31363026	rs2523466	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.33		rs2523466-G	0.77	8E-68				Affymetrix [10369434] (imputed)	N
824	chr6	31364034	31364035	rs11757660	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG181B23.7	rs11757660-C	NR	9E-13		0.0223072	[0.016-0.028] unit decrease	Affymetrix [321016] (imputed)	N
824	chr6	31364075	31364076	rs28366133	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG181B23.7	rs28366133-T	NR	2E-10		0.0184393	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
824	chr6	31364075	31364076	rs28366133	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG181B23.7	rs28366133-T	NR	7E-10		0.0199985	[0.014-0.026] unit increase	Affymetrix [323858] (imputed)	N
824	chr6	31364075	31364076	rs28366133	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG181B23.7	rs28366133-T	NR	2E-9		0.0176126	[0.012-0.023] unit increase	Affymetrix [319769] (imputed)	N
824	chr6	31364075	31364076	rs28366133	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	XXbac-BPG181B23.7	rs28366133-T	NR	6E-9		0.0188541	[0.012-0.025] unit increase	Affymetrix [127266] (imputed)	N
824	chr6	31364075	31364076	rs28366133	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG181B23.7	rs28366133-T	NR	6E-18		0.0274101	[0.021-0.034] unit decrease	Affymetrix [323123] (imputed)	N
824	chr6	31364075	31364076	rs28366133	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG181B23.7	rs28366133-T	NR	5E-10		0.0183385	[0.013-0.024] unit increase	Affymetrix [321169] (imputed)	N
824	chr6	31364075	31364076	rs28366133	28468790	Agopian AJ	2017-06-01	Circ Cardiovasc Genet	Genome-Wide Association Studies and Meta-Analyses for Congenital Heart Defects.	Conotruncal heart defects (maternal effects)	up to 838 European ancestry trios	NA	6p21.33	intergenic	rs28366133-?	NR	4E-6		1.226459	[1.124163-1.338064]	Illumina [at least 4756722] (imputed)	N
824	chr6	31364706	31364707	rs2251396	25936594	Tomer Y	2015-04-27	J Autoimmun	Genome wide identification of new genes and pathways in patients with both autoimmune thyroiditis and type 1 diabetes.	Type 1 diabetes and autoimmune thyroid diseases	346 European ancestry cases, 727 European ancestry controls	185 European ancestry cases, 340 European ancestry controls	6p21.33	PSORS1C1, MICA, HCP5	rs2251396-T	NR	1E-22		2.2132		Illumina [514008]	N
824	chr6	31364847	31364848	rs72502580	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG181B23.7	rs72502580-T	NR	9E-9		0.036638	[0.024-0.049] unit increase	Affymetrix [323858] (imputed)	N
824	chr6	31364847	31364848	rs72502580	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	XXbac-BPG181B23.7	rs72502580-T	NR	8E-9		0.0367455	[0.024-0.049] unit increase	Affymetrix [127266] (imputed)	N
824	chr6	31365786	31365787	rs4349859	21743469	Evans DM	2011-07-10	Nat Genet	Interaction between ERAP1 and HLA-B27 in ankylosing spondylitis implicates peptide handling in the mechanism for HLA-B27 in disease susceptibility.	Ankylosing spondylitis	3,023 European ancestry cases, 8,779 European ancestry controls	2,111 European ancestry cases, 4,483 European ancestry controls	6p21.33	HLA-B	rs4349859-A	0.04	1E-200	(less than)			Illumina [2223620] (imputed)	N
824	chr6	31366594	31366595	rs2596542	21499248	Kumar V	2011-04-17	Nat Genet	Genome-wide association study identifies a susceptibility locus for HCV-induced hepatocellular carcinoma.	Hepatocellular carcinoma	721 Japanese ancestry cases, 2,890 Japanese ancestry controls	673 Japanese ancestry cases, 2,596 Japanese ancestry controls	6p21.33	MICA	rs2596542-A	0.33	4E-13		1.39	[1.27-1.52]	Illumina [432703]	N
824	chr6	31367051	31367052	rs146482045	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.33		rs146482045-T	0.934	1E-13				Affymetrix [10369434] (imputed)	N
824	chr6	31368450	31368451	rs6911024	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	6p21.33	MICA, HLA-C	rs6911024-T	0.90242	2E-13		0.038308	[0.028-0.049] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
824	chr6	31368507	31368508	rs112142209	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DNAJB11	5,359 Icelandic ancestry individuals	NA	6p21.33		rs112142209-G	0.01759	6E-13		0.501147	[0.36-0.64] unit increase	Illumina [7506463] (imputed)	N
824	chr6	31369661	31369662	rs13220896	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	6p21.33	MICA	rs13220896-G	0.95996	2E-12		0.0328311	[0.024-0.042] unit increase	NR [13737936] (imputed)	N
824	chr6	31369661	31369662	rs13220896	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p21.33		rs13220896-?	NR	4E-15		0.0407174	[0.03-0.051] unit increase	Affymetrix [20259828] (imputed)	N
824	chr6	31370721	31370722	rs17200067	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MICA	5,360 Icelandic ancestry individuals	NA	6p21.33		rs17200067-T	0.03112	2E-87		1.02615	[0.92-1.13] unit increase	Illumina [7506463] (imputed)	N
824	chr6	31370721	31370722	rs17200067	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	MICA, HCP5, Y_RNA	rs17200067-T	0.0311245	6E-15	(EA, MHC class I polypeptide-related sequence A)	0.9664	[0.73-1.21] unit increase	Affymetrix [509946]	N
824	chr6	31370983	31370984	rs116135464	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Uveitis	2,616 European ancestry cases, 478,126 European ancestry controls, 125 East Asian ancestry cases, 174,600 East Asian ancestry controls	NA	6p21.33		rs116135464-T	NR	8E-191		1.8397	[1.72-1.96] unit increase	Affymetrix, Illumina [25844095] (imputed)	N
824	chr6	31371070	31371071	rs59440261	26553974	McLaren PJ	2015-11-09	Proc Natl Acad Sci U S A	Polymorphisms of large effect explain the majority of the host genetic contribution to variation of HIV-1 virus load.	Setpoint viral load in HIV-1 infection	6,315 European ancestry cases	NA	6p21.33	HLA-B	rs59440261-?	NR	2E-83				Affymetrix, Illumina [~ 8000000] (imputed)	N
824	chr6	31371429	31371430	rs2844519	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	6p21.33	MICA	rs2844519-C	0.792829	7E-10		0.017882064	[0.012-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
824	chr6	31371586	31371587	rs2301747	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCP5, MICA	rs2301747-G	NR	2E-12		0.0308634	[0.022-0.039] unit decrease	Affymetrix [321016] (imputed)	N
824	chr6	31372568	31372569	rs2844518	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MICA	5,360 Icelandic ancestry individuals	NA	6p21.33		rs2844518-T	0.3275	2E-28		0.215281	[0.18-0.25] unit increase	Illumina [7506463] (imputed)	N
824	chr6	31372717	31372718	rs2507968	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Gynecologic disease (multivariate analysis)	up to 7,975 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs2507968-?		3E-9	(uterine fibroid, uterine cervical cancer)			Illumina [7645193] (imputed)	N
824	chr6	31373984	31373985	rs116795853	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	MICA	rs116795853-A	0.026	1E-18	(DnaJ homolog subfamily B member 11, DNAJB11.7110.2.3)	0.66	[0.5-0.82] unit increase	Affymetrix [10572788] (imputed)	N
824	chr6	31374261	31374262	rs2857281	26190474	Dai Y	2015-07-20	Sci Rep	Performance of genetic risk factors in prediction of trichloroethylene induced hypersensitivity syndrome.	Trichloroethylene-induced hypersensitivity syndrome	98 Han Chinese ancestry cases, 98 Han Chinese ancestry trichloroethylene-tolerant controls	Up to 74 Han Chinese ancestry cases, up to 1,661 Han Chinese ancestry trichloroethylene-tolerant controls	6p21.33	MICA	rs2857281-C	0.081	1E-37		11.92	[8.16-17.42]	Illumina [1392644]	N
824	chr6	31374578	31374579	rs12174396	32771030	Tangtanatakul P	2020-08-08	Arthritis Res Ther	Meta-analysis of genome-wide association study identifies FBN2 as a novel locus associated with systemic lupus erythematosus in Thai population.	Systemic lupus erythematosus	487 Thai cases, 1,606 Thai controls	405 Thai cases, 1,590 Thai controls	6p21.33	HCP5	rs12174396-G	0.18	2E-7		0.6904	[NR]	Illumina [421909] (imputed)	N
824	chr6	31376544	31376545	rs2263314	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCP5, MICA	rs2263314-T	NR	9E-9		0.0249923	[0.016-0.034] unit increase	Affymetrix [323858] (imputed)	N
824	chr6	31376544	31376545	rs2263314	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HCP5, MICA	rs2263314-T	NR	6E-9		0.0252674	[0.017-0.034] unit increase	Affymetrix [127266] (imputed)	N
824	chr6	31377586	31377587	rs12175489	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue adjusted for BMI	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	6p21.33	HCP5, HLA-B	rs12175489-A	0.15	2E-6	(men)			Affymetrix, Illumina [2500000] (imputed)	N
824	chr6	31377639	31377640	rs114291795	27157822	Hallberg P	2016-05-03	Lancet Diabetes Endocrinol	Genetic variants associated with antithyroid drug-induced agranulocytosis: a genome-wide association study in a European population.	Non-chemotherapy drug induced agranulocytosis	222 European ancestry cases, 12 cases, 5,170 European ancestry controls	NA	6p21.33	MICA, HCP5	rs114291795-?	NR	2E-15		3.57	[2?61-4?90]	Illumina [9380034] (imputed)	N
824	chr6	31377718	31377719	rs2523496	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cervical cancer	909 European ancestry cases, 238,249 European ancestry controls, 967 East Asian ancestry cases, 60,614 East Asian ancestry controls	NA	6p21.33		rs2523496-C	NR	2E-13		0.2559	[0.19-0.32] unit decrease	Affymetrix, Illumina [25777760] (imputed)	N
824	chr6	31377718	31377719	rs2523496	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cervical cancer	6,563 European ancestry cases, 410,350 European ancestry controls	NA	6p21.33		rs2523496-T	NR	4E-25		1.2076	NR	Affymetrix [7846216] (imputed)	N
824	chr6	31377748	31377752	rs66509943	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	6p21.33	MICA	rs66509943-?	NR	2E-17		0.0473851	[0.036-0.058] unit decrease	Illumina [13520550] (imputed)	N
824	chr6	31377752	31377756	rs201838897	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (salicylic acid and derivatives)	61,583 European ancestry cases, 50,427 European ancestry controls, 41,461 East Asian ancestry cases, 137,265 East Asian ancestry controls	NA	6p21.33		rs201838897-C	NR	9E-17		0.0893	[0.068-0.11] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
824	chr6	31377752	31377756	rs201838897	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls, 49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	6p21.33		rs201838897-C	NR	4E-14		0.0785	[0.058-0.099] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
824	chr6	31377792	31377793	rs6938453	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCP5, MICA	rs6938453-A	NR	2E-14		0.0262104	[0.019-0.033] unit decrease	Affymetrix [321016] (imputed)	N
824	chr6	31377792	31377793	rs6938453	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCP5, MICA	rs6938453-A	NR	3E-14		0.028343	[0.021-0.036] unit decrease	Affymetrix [323123] (imputed)	N
824	chr6	31377792	31377793	rs6938453	33794208	Bowden SJ	2021-04-01	Lancet Oncol	Genetic variation in cervical preinvasive and invasive disease: a genome-wide association study.	Cervical intraepithelial neoplasia grade 3 and invasive cervical cancer	764 European ancestry invasive cervical cancer cases, 4,005 European ancestry cervical intraepithelial neoplasia grade 3 cases, 145,545 European ancestry controls	NA	6p21.33	MICA	rs6938453-?	NR	2E-17		0.79	[0.75-0.83]	Affymetrix [9600464] (imputed)	N
824	chr6	31377792	31377793	rs6938453	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	6p21.33	NR	rs6938453-?	NR	6E-29	(MIC-A)	0.979642	[0.81-1.15] unit decrease	Illumina [11901634] (imputed)	N
824	chr6	31377908	31377909	rs748543364	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-3 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	6p21.33		rs748543364-AG	0.654332	5E-8		0.0236619	[0.015-0.032] unit decrease	NR [11722792] (imputed)	N
824	chr6	31377908	31377909	rs748543364	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Docosahexaenoic acid levels	115,006 European ancestry individuals	NA	6p21.33		rs748543364-AG	0.654332	7E-10		0.0264866	[0.018-0.035] unit decrease	NR [11722792] (imputed)	N
824	chr6	31377973	31377974	rs28559870	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.33		rs28559870-C	0.824	3E-54				Affymetrix [10369434] (imputed)	N
824	chr6	31377973	31377974	rs28559870	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.33	NR	rs28559870-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
824	chr6	31377974	31377975	rs28436034	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCP5, MICA	rs28436034-G	NR	8E-9		0.022753	[0.015-0.03] unit increase	Affymetrix [323858] (imputed)	N
824	chr6	31377974	31377975	rs28436034	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HCP5, MICA	rs28436034-G	NR	4E-8		0.0216205	[0.014-0.029] unit increase	Affymetrix [127266] (imputed)	N
824	chr6	31377974	31377975	rs28436034	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCP5, MICA	rs28436034-G	NR	4E-11		0.02346	[0.016-0.03] unit decrease	Affymetrix [321016] (imputed)	N
824	chr6	31377974	31377975	rs28436034	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCP5, MICA	rs28436034-G	NR	2E-13		0.0283594	[0.021-0.036] unit decrease	Affymetrix [323123] (imputed)	N
824	chr6	31378334	31378335	rs9380254	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	6p21.33	MICA	rs9380254-C	0.061689	4E-16		0.03985305	[0.03-0.049] unit decrease	Affymetrix [93095623] (imputed)	N
824	chr6	31378767	31378768	rs2853981	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.33	MICA	rs2853981-G	NR	5E-8	(women)	0.0250092	[0.016-0.034] unit decrease	Illumina [13520550] (imputed)	N
824	chr6	31379042	31379043	rs41560824	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LRPAP1	5,361 Icelandic ancestry individuals	NA	6p21.33		rs41560824-G	0.0175	3E-261		2.24371	[2.12-2.37] unit increase	Illumina [7506463] (imputed)	N
824	chr6	31379114	31379115	rs1131896	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	6p21.33	MICA	rs1131896-A	0.231391	1E-19		0.028329957	[0.022-0.034] unit increase	Affymetrix [93095623] (imputed)	N
824	chr6	31379114	31379115	rs1131896	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	6p21.33	MICA	rs1131896-A	0.2312	1E-29		0.04771386	[0.039-0.056] unit decrease	Affymetrix [~ 2500000] (imputed)	N
824	chr6	31379114	31379115	rs1131896	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	6p21.33	MICA	rs1131896-A	0.2312	2E-28		0.04672725	[0.038-0.055] unit increase	Affymetrix [~ 2500000] (imputed)	N
824	chr6	31379303	31379304	rs2853977	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.33	MICA	rs2853977-T	NR	1E-10		0.0208107	[0.015-0.027] unit decrease	Illumina [13520550] (imputed)	N
824	chr6	31379390	31379391	rs3828879	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCP5, MICA	rs3828879-T	NR	3E-10		0.0269729	[0.019-0.035] unit decrease	Affymetrix [321016] (imputed)	N
824	chr6	31380033	31380034	rs112243036	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCP5, MICA	rs112243036-A	NR	1E-9		0.0293452	[0.02-0.039] unit decrease	Affymetrix [323123] (imputed)	N
824	chr6	31380421	31380422	rs2256174	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	6p21.33	MICA, HCP5	rs2256174-A	0.4616	2E-7		0.0375	[0.023-0.052] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
824	chr6	31380448	31380449	rs2256175	28041642	Carmona FD	2016-12-29	Am J Hum Genet	A Genome-wide Association Study Identifies Risk Alleles in Plasminogen and P4HA2 Associated with Giant Cell Arteritis.	Giant cell arteritis	2,134 European ancestry cases, 9,125 European ancestry controls	NA	6p21.33	HLA-B	rs2256175-?	NR	8E-6		1.18		Illumina [1844133] (imputed)	N
824	chr6	31380448	31380449	rs2256175	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	6p21.33	NR	rs2256175-?		8E-35	(MICA)			Illumina [NR]	N
824	chr6	31380528	31380529	rs2256183	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCP5, MICA	rs2256183-G	NR	1E-10		0.018139	[0.013-0.024] unit decrease	Affymetrix [321016] (imputed)	N
824	chr6	31380528	31380529	rs2256183	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of white cells	171,996 European ancestry individuals	NA	6p21.33	HCP5, MICA	rs2256183-G	0.4973	1E-9		0.0210357	[0.014-0.028] unit increase	Affymetrix [~ 2500000] (imputed)	N
824	chr6	31380528	31380529	rs2256183	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	6p21.33	MICA	rs2256183-A	0.45	8E-29		0.04	[NR] unit increase	Affymetrix, Illumina [2834208] (imputed)	N
824	chr6	31381350	31381351	rs2853968	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic hepatitis C infection	273 European ancestry cases, 351,740 European ancestry controls, 7,110 East Asian ancestry cases, 169,588 East Asian ancestry controls	NA	6p21.33		rs2853968-G	NR	2E-10		0.1124	[0.078-0.147] unit increase	Affymetrix, Illumina [20457788] (imputed)	N
824	chr6	31382716	31382717	rs2853975	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein B2M	5,353 Icelandic ancestry individuals	NA	6p21.33		rs2853975-T	0.2249	9E-19		0.18093	[0.14-0.22] unit increase	Illumina [7506463] (imputed)	N
824	chr6	31382716	31382717	rs2853975	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCP5, MICA	rs2853975-T	NR	3E-9		0.0197511	[0.013-0.026] unit increase	Affymetrix [323123] (imputed)	N
824	chr6	31382881	31382882	rs9266825	35215271	Almandil NB	2022-01-27	Pharmaceuticals (Basel)	Integration of Transcriptome and Exome Genotyping Identifies Significant Variants with Autism Spectrum Disorder.	Autism spectrum disorder	70 Arab ancestry cases, 132 Arab ancestry controls	NA	6p21.33	NA	rs9266825-A	0.4659	6E-6		0.3147	[0.1885-0.5253]	Illumina [243345]	N
824	chr6	31382910	31382911	rs1882	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	6p21.33	MICA	rs1882-G	0.4676	1E-19		0.03244427	[0.025-0.039] unit decrease	Affymetrix [~ 2500000] (imputed)	N
824	chr6	31382910	31382911	rs1882	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	6p21.33	MICA	rs1882-G	0.4671	5E-19		0.0315247	[0.025-0.038] unit increase	Affymetrix [~ 2500000] (imputed)	N
824	chr6	31383129	31383130	rs9266834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	6p21.33		rs9266834-T	0.889775	2E-11		0.0441975	[0.031-0.057] unit decrease	NR [11722792] (imputed)	N
824	chr6	31383129	31383130	rs9266834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	6p21.33		rs9266834-T	0.889775	5E-14		0.0490222	[0.036-0.062] unit decrease	NR [11722792] (imputed)	N
824	chr6	31383129	31383130	rs9266834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6p21.33		rs9266834-T	0.889775	2E-11		0.0437642	[0.031-0.057] unit decrease	NR [11722792] (imputed)	N
824	chr6	31383129	31383130	rs9266834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	6p21.33		rs9266834-T	0.889775	2E-11		0.0427432	[0.03-0.055] unit decrease	NR [11722792] (imputed)	N
824	chr6	31383129	31383130	rs9266834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in IDL	115,082 European ancestry individuals	NA	6p21.33		rs9266834-T	0.889775	9E-15		0.0506081	[0.038-0.063] unit increase	NR [11722792] (imputed)	N
824	chr6	31383129	31383130	rs9266834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	6p21.33		rs9266834-T	0.889775	3E-9		0.0392601	[0.026-0.052] unit increase	NR [11722792] (imputed)	N
824	chr6	31383129	31383130	rs9266834	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCP5	rs9266834-A	NR	8E-9		0.0263611	[0.017-0.035] unit decrease	Affymetrix [321016] (imputed)	N
824	chr6	31383129	31383130	rs9266834	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCP5	rs9266834-A	NR	1E-9		0.0303575	[0.021-0.04] unit decrease	Affymetrix [323123] (imputed)	N
824	chr6	31385484	31385485	rs2596528	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCP5	rs2596528-C	NR	1E-19		0.0277879	[0.022-0.034] unit decrease	Affymetrix [323123] (imputed)	N
824	chr6	31387874	31387875	rs113203074	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.33		rs113203074-C	0.959	8E-27				Affymetrix [10369434] (imputed)	N
824	chr6	31387874	31387875	rs113203074	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCP5	rs113203074-A	NR	2E-9		0.0426261	[0.029-0.057] unit decrease	Affymetrix [321016] (imputed)	N
824	chr6	31388448	31388449	rs73402222	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8+ and CD8dim T cell %leukocyte	3,668 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs73402222-C	0.34582	5E-9		0.1904	[0.13-0.25] unit decrease	Illumina [18430788] (imputed)	N
824	chr6	31388448	31388449	rs73402222	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8+ T cell %T cell	3,668 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs73402222-C	0.34582	3E-9		0.1934	[0.13-0.26] unit decrease	Illumina [18430788] (imputed)	N
824	chr6	31388448	31388449	rs73402222	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4+/CD8+ T cell	3,652 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs73402222-C	0.34555	2E-8		0.1905	[0.12-0.26] unit increase	Illumina [18427348] (imputed)	N
824	chr6	31389767	31389768	rs17206736	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	MICA, HCP5	rs17206736-G	0.07673019	1E-26	(EA, MHC class I polypeptide-related sequence A)	0.8764	[0.72-1.03] unit decrease	Affymetrix [509946]	N
824	chr6	31389783	31389784	rs2844511	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	MICA, HCP5	rs2844511-A	0.3969849	4E-119	(MHC class I polypeptide-related sequence A)	0.9218	[0.85-0.99] unit increase	Affymetrix [509946]	N
824	chr6	31390361	31390361	rs113265260	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs113265260-TAC	0.035	1E-51	(MHC class I polypeptide-related sequence B, MICB.5102.55.3)	1.07	[0.93-1.21] unit increase	Affymetrix [10572788] (imputed)	N
824	chr6	31390409	31390410	rs2516448	23482656	Chen D	2013-03-12	J Natl Cancer Inst	Genome-wide association study of susceptibility loci for cervical cancer.	Cervical cancer	1,034 European ancestry cases, 3,948 European ancestry controls	1,140 European ancestry cases, 1,058 European ancestry controls	6p21.33	MICA	rs2516448-?	NR	4E-18		1.42	[1.31-1.54]	Illumina [632668]	N
824	chr6	31391400	31391401	rs4418214	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	6p21.33	HCP5	rs4418214-C	0.084923	7E-17		0.03656655	[0.028-0.045] unit decrease	Affymetrix [93095623] (imputed)	N
824	chr6	31391400	31391401	rs4418214	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Number of common colds	43,826 European ancestry cases, 15,720 European ancestry controls	NA	6p21.33	NR	rs4418214-?	NR	1E-6		0.0345	[0.021-0.048] unit decrease	Illumina [at least 560000] (imputed)	N
824	chr6	31391400	31391401	rs4418214	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	MICA, HCP5	rs4418214-C	0.06230848	2E-15	(EA, MHC class I polypeptide-related sequence A)	0.7104	[0.54-0.88] unit decrease	Affymetrix [509946]	N
824	chr6	31391400	31391401	rs4418214	23935489	McLaren PJ	2013-07-25	PLoS Pathog	Association study of common genetic variants and HIV-1 acquisition in 6,300 infected cases and 7,200 controls.	HIV-1 susceptibility	6,334 European ancestry cases, 7,247 European ancestry controls	NA	6p21.33	HLA-C, HLA-B	rs4418214-C	NR	4E-11		1.52		Affymetrix, Illumina [~ 8000000] (imputed)	N
824	chr6	31391400	31391401	rs4418214	21051598	Pereyra F	2010-11-04	Science	The major genetic determinants of HIV-1 control affect HLA class I peptide presentation.	HIV-1 control	516 European cases, 1,196 European controls, 341 African American cases, 892 African American controls, 117 Hispanic cases, 560 Hispanic controls	NA	6p21.33	MICA	rs4418214-C	0.075	1E-34	(EA)	4.4	[NR]	Illumina [1384048] (imputed)	N
824	chr6	31393392	31393393	rs73402240	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.33		rs73402240-C	0.962	4E-8				Affymetrix [10369434] (imputed)	N
824	chr6	31393392	31393393	rs73402240	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs73402240-C	0.962	2E-11				Affymetrix [10369434] (imputed)	N
824	chr6	31393392	31393393	rs73402240	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCP5	rs73402240-T	NR	3E-13		0.0548397	[0.04-0.07] unit decrease	Affymetrix [321016] (imputed)	N
824	chr6	31395013	31395014	rs116534628	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.33		rs116534628-C	0.916	1E-14				Affymetrix [10369434] (imputed)	N
824	chr6	31395213	31395214	rs181785842	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCP5	rs181785842-C	NR	2E-9		0.0590849	[0.04-0.078] unit decrease	Affymetrix [321016] (imputed)	N
824	chr6	31397389	31397390	rs9267057	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.33	intergenic	rs9267057-?		5E-9		1.1627907	[1.1-1.22]	Affymetrix, Illumina [NR]	N
824	chr6	31397554	31397555	rs183730977	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Platelet-derived growth factor BB levels	8,293 Finnish ancestry individuals	NA	6p21.33	NR	rs183730977-C		1E-6		0.1914	[0.11-0.27] SD units increase	NR [10700000] (imputed)	N
824	chr6	31400291	31400292	rs2516471	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	6p21.33	HCP5	rs2516471-A	0.062429	8E-72		0.09513792	[0.085-0.106] unit decrease	Affymetrix [93095623] (imputed)	N
824	chr6	31401465	31401466	rs2263323	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MICA	5,360 Icelandic ancestry individuals	NA	6p21.33		rs2263323-T	0.1049	7E-192		0.829215	[0.77-0.88] unit decrease	Illumina [7506463] (imputed)	N
824	chr6	31402382	31402384	rs199530775	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs199530775-C	0.038	2E-14	(MHC class I polypeptide-related sequence B, MICB.5102.55.3)	0.49	[0.37-0.61] unit increase	Affymetrix [10572788] (imputed)	N
824	chr6	31402382	31402383	rs55957433	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCP5	rs55957433-G	NR	3E-8		0.0196371	[0.013-0.027] unit decrease	Affymetrix [321016] (imputed)	N
824	chr6	31403624	31403625	rs7759215	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.33	NR	rs7759215-G	0.013	9E-13		0.564225	[0.41-0.72] unit increase	Affymetrix [up to 8900000] (imputed)	N
824	chr6	31403624	31403625	rs7759215	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.33	NR	rs7759215-G	0.013	5E-6	(women)	0.575344	[0.33-0.82] unit increase	Affymetrix [up to 8900000] (imputed)	N
824	chr6	31405616	31405617	rs2596466	23417110	Tin A	2013-02-16	Hum Genet	Genome-wide association study identified the human leukocyte antigen region as a novel locus for plasma beta-2 microglobulin.	Beta-2 microglubulin plasma levels	6,728 European ancestry individuals		6p21.33	MICA	rs2596466-C	0.07	2E-12		0.05	[0.034-0.066] unit decrease	Affymetrix [2500000] (imputed)	N
824	chr6	31405619	31405620	rs3128981	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCP5	rs3128981-G	NR	3E-8		0.0188491	[0.012-0.026] unit decrease	Affymetrix [323858] (imputed)	N
824	chr6	31405619	31405620	rs3128981	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	6p21.33	HCP5	rs3128981-G	0.294246	9E-26		0.025565179	[0.021-0.03] unit increase	Affymetrix [93095623] (imputed)	N
824	chr6	31406306	31406307	rs190497944	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Iritis	110 East Asian ancestry cases, 175,543 East Asian ancestry controls	NA	6p21.33		rs190497944-C	0.001120244	5E-9		27.140694	[18.06-36.22] unit increase	Illumina [13429677] (imputed)	N
824	chr6	31407330	31407331	rs2516470	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	6p21.33	HCP5	rs2516470-C	0.663227	4E-13		0.017850922	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
824	chr6	31407330	31407331	rs2516470	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	6p21.33	NR	rs2516470-?	NR	9E-10	(MIC-A)	0.992294	[0.67-1.31] unit decrease	Illumina [11901634] (imputed)	N
824	chr6	31407330	31407331	rs2516470	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	HCP5, LINC01149	rs2516470-G	0.3482412	5E-23	(EA, MHC class I polypeptide-related sequence A)	0.4412	[0.36-0.53] unit increase	Affymetrix [509946]	N
824	chr6	31407578	31407579	rs2524277	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TFF3	5,365 Icelandic ancestry individuals	NA	6p21.33		rs2524277-A	0.0351	2E-13		0.363897	[0.27-0.46] unit increase	Illumina [7506463] (imputed)	N
824	chr6	31407578	31407579	rs2524277	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TFF3	5,364 Icelandic ancestry individuals	NA	6p21.33		rs2524277-A	0.0351	2E-15		0.383348	[0.29-0.48] unit increase	Illumina [7506463] (imputed)	N
824	chr6	31407578	31407579	rs2524277	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	HCP5	rs2524277-A	0.062	2E-19	(Trefoil factor 3, TFF3.4721.54.2)	0.46	[0.36-0.56] unit increase	Affymetrix [10572788] (imputed)	N
824	chr6	31407578	31407579	rs2524277	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	NFKBIL1	rs2524277-A	0.03869347	1E-12	(EA, Trefoil factor 3)	0.7819	[0.57-0.99] unit increase	Affymetrix [509946]	N
824	chr6	31407757	31407758	rs2844520	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6p21.33		rs2844520-?	NR	1E-10		0.870197	[0.83-0.91]	NR [685523]	N
824	chr6	31407827	31407828	rs9469003	21801394	Genin E	2011-07-29	Orphanet J Rare Dis	Genome-wide association study of Stevens-Johnson Syndrome and Toxic Epidermal Necrolysis in Europe.	Drug-induced Stevens-Johnson syndrome or toxic epidermal necrolysis (SJS/TEN)	424 European ancestry cases, 1,881 European ancestry controls	NA	6p21.33	HCP5	rs9469003-C	0.15	2E-9		1.73	[1.44-2.08]	Illumina [268914]	N
824	chr6	31408264	31408265	rs2524276	22864933	O'Donnell PH	2012-01-03	Cancer	Identification of novel germline polymorphisms governing capecitabine sensitivity.	Capecitabine sensitivity	Up to 84 East Asian ancestry lymphoblastoid cell lines, up to 164 European ancestry lymphoblastoid cell lines, up to 173 African ancestry lymphoblastoid cell lines, up to 82 African American lymphoblastoid cell lines	NA	6p21.33	intergenic	rs2524276-?	NR	6E-6				NR [~ 2000000]	N
824	chr6	31409282	31409283	rs61447909	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Squamous cell carcinoma	9,674 European ancestry cases, 625,657 European ancestry controls	NA	6p21.33	LINC01149	rs61447909-A	NR	2E-6		1.1111112	[1.06-1.16]	Affymetrix, Illumina [up to 9061544] (imputed)	N
824	chr6	31409282	31409283	rs61447909	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Keratinocyte cancer (MTAG)	at least 18,538 European ancestry cases, at least 340,302 European ancestry controls	NA	6p21.33	LINC01149	rs61447909-A	0.098186	4E-13		1.098901	[1.08-1.14]	Affymetrix [7600000] (imputed)	N
824	chr6	31409565	31409566	rs2844512	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cervical cancer	967 East Asian ancestry cases, 60,614 East Asian ancestry controls	NA	6p21.33		rs2844512-G	0.576319779	1E-12		0.34585676	[0.25-0.44] unit decrease	Illumina [13381745] (imputed)	N
824	chr6	31410407	31410408	rs2844510	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls	NA	6p21.33	MICB, MICA	rs2844510-T	0.11	2E-6	(conditioned on rs2596464 and rs2855812)	0.09	[0.051-0.129] unit increase	Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
824	chr6	31410520	31410521	rs3093958	35074870	Chia R	2022-02-01	Proc Natl Acad Sci U S A	Identification of genetic risk loci and prioritization of genes and pathways for myasthenia gravis: a genome-wide association study.	Early-onset myasthenia gravis	595 European ancestry cases, 2,718 European ancestry controls	NA	6p21.33		rs3093958-G	0.094	4E-42		4.49	[3.62-5.57]	Illumina [24006246] (imputed)	N
824	chr6	31410520	31410521	rs3093958	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p21.33	NR	rs3093958-?	NR	6E-7		4.984	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
824	chr6	31410523	31410524	rs6928810	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	6p21.33	HCP5, LINC01149	rs6928810-T	0.246387	1E-14		0.022360196	[0.017-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
824	chr6	31410947	31410948	rs3869132	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	NR	rs3869132-?	NR	1E-91	(EA, MHC class I polypeptide-related sequence A)			Affymetrix [509946]	N
824	chr6	31410947	31410948	rs3869132	25147954	Enroth S	2014-08-22	Nat Commun	Strong effects of genetic and lifestyle factors on biomarker variation and use of personalized cutoffs.	MHC class I polypeptide-related sequence A levels	up to 653 individuals	up to 317 individuals	6p21.33	MIC-A	rs3869132-A	0.43539	5E-16		0.73	[0.55-0.91] unit decrease	Illumina [4840842] (imputed)	N
824	chr6	31412426	31412427	rs34624527	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	6p21.33	HCP5, LINC01149	rs34624527-A	0.4973	2E-15		0.02871944	[0.022-0.036] unit increase	Affymetrix [~ 2500000] (imputed)	N
824	chr6	31412947	31412948	rs2596465	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mononucleosis	17,457 European ancestry cases, 68,446 European ancestry controls	NA	6p21.33	MICA, MICB, HLA	rs2596465-T	0.47	2E-9		1.08	[1.06-1.09]	Illumina [at least 560000] (imputed)	N
824	chr6	31412960	31412961	rs2596464	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma (childhood onset)	7,131 European ancestry cases, 13,631 European ancestry controls, 1,239 Japanese ancestry cases, 3,976 Japanese ancestry controls, 606 Latino cases, 792 Latino controls	NA	6p21.33	MICB, MICA	rs2596464-C	NR	1E-8		1.12	[1.08-1.17]	Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
824	chr6	31412960	31412961	rs2596464	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls	NA	6p21.33	MICA, MICB	rs2596464-C	0.48	2E-13		0.09	[0.07-0.11] unit increase	Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
824	chr6	31413518	31413519	rs41287767	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28- CD8+ T cell %T cell	3,440 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs41287767-T	0.43459	5E-8		0.1673	[0.11-0.23] unit decrease	Illumina [18357815] (imputed)	N
824	chr6	31413706	31413707	rs56263516	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Uterine fibroids	21,024 European ancestry cases, 237,694 European ancestry controls, 14,475 East Asian ancestry cases, 65,733 East Asian ancestry controls	NA	6p21.33		rs56263516-G	NR	4E-8		0.0661	[0.042-0.09] unit increase	Affymetrix, Illumina [25795146] (imputed)	N
824	chr6	31413706	31413707	rs56263516	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCP5, LINC01149	rs56263516-G	NR	2E-8		0.0301139	[0.02-0.041] unit increase	Affymetrix [323858] (imputed)	N
824	chr6	31413706	31413707	rs56263516	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HCP5, LINC01149	rs56263516-G	NR	3E-8		0.0297948	[0.019-0.04] unit increase	Affymetrix [127266] (imputed)	N
824	chr6	31413808	31413809	rs9267091	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.33	LINC01149, HCP5	rs9267091-A	0.228	9E-6		0.0351	[0.02-0.051] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
824	chr6	31414326	31414327	rs2516466	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6p21.33	NR	rs2516466-G	0.5538	4E-20		1.0564125	[1.04-1.07]	Affymetrix [15688218] (imputed)	N
824	chr6	31414730	31414731	rs2523696	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	6p21.33	LINC01149	rs2523696-T	0.4403	9E-15		0.02759642	[0.021-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
824	chr6	31414905	31414906	rs2516465	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.33	NR	rs2516465-T	0.095	6E-48	(conditional)	2.113	[2.01-2.21]	Illumina [11270530] (imputed)	N
824	chr6	31415064	31415065	rs3131627	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28+ CD45RA+ CD8+ T cell Absolute Count	3,408 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs3131627-G	0.49139	2E-9		0.1259	[0.085-0.167] unit increase	Illumina [18340221] (imputed)	N
824	chr6	31415354	31415355	rs9267098	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	6p21.33	HCP5	rs9267098-G	0.2684	8E-31		0.04978207	[0.041-0.058] unit decrease	Affymetrix [~ 2500000] (imputed)	N
824	chr6	31415851	31415852	rs4458721	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.33	NR	rs4458721-T	0.249	3E-10		1.181	[1.13-1.23]	Illumina [11270530] (imputed)	N
824	chr6	31415876	31415877	rs549219764	31577861	Dai J	2019-10-31	Int J Cancer	Genome-wide association study of INDELs identified four novel susceptibility loci associated with lung cancer risk.	Lung cancer	20,871 European ancestry cases, 15,971 European ancestry controls, 2,331 Chinese ancestry cases, 3,077 Chinese ancestry controls	NA	6p21.33	HCP5	rs549219764-D	0.2	2E-9		1.11	[1.07-1.15]	Illumina [484196]	N
824	chr6	31416989	31416990	rs2524280	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	HLA-C, MICA, Y_RNA, HLA-B, XXbac-BPG248L24.12, MIR6891, HLA-S, XXbac-BPG181B23.7, HCP5, LINC01149, XXbac-BPG181B23.6	rs2524280-A	0.07437186	3E-24	(EA, MHC class I polypeptide-related sequence A)	0.8388	[0.68-1] unit decrease	Affymetrix [509946]	N
824	chr6	31417455	31417456	rs9501130	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p21.33	LINC01149	rs9501130-G	0.822	2E-11		0.099	[0.07-0.128] unit increase	Affymetrix, Illumina [7374092] (imputed)	N
824	chr6	31417539	31417540	rs2596459	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD45RA+ CD8+ T cell %T cell	3,427 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs2596459-T	0.49008	2E-8		0.1499	[0.098-0.202] unit increase	Illumina [18349913] (imputed)	N
824	chr6	31417741	31417742	rs10947210	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	6p21.33		rs10947210-T	0.923561	3E-10		0.0453373	[0.031-0.059] unit decrease	NR [11722792] (imputed)	N
824	chr6	31417741	31417742	rs10947210	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	6p21.33		rs10947210-T	0.923537	2E-10		0.0471765	[0.033-0.062] unit increase	NR [11722792] (imputed)	N
824	chr6	31418809	31418810	rs3131623	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p21.33	MICB, MICA, HLA	rs3131623-T	0.85	2E-15		1.1	[1.09-1.12]	Illumina [at least 560000] (imputed)	N
824	chr6	31419064	31419065	rs3130901	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	6p21.33	NR	rs3130901-T	NR	3E-14		0.0315719	[0.024-0.04] unit increase	Affymetrix [16832071] (imputed)	N
824	chr6	31420237	31420238	rs2259384	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	6p21.33	HCP5	rs2259384-C	0.484261	6E-11		0.01838512	[0.013-0.024] unit increase	Affymetrix [93095623] (imputed)	N
824	chr6	31421296	31421297	rs2263316	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Prostate cancer	7,438 White British ancestry cases, 118,206 White British ancestry controls	NA	6p21.33		rs2263316-?	NR	3E-7		1.09455	[1.06-1.13]	NR [680312]	N
824	chr6	31421296	31421297	rs2263316	29185836	Chen MH	2017-11-29	Platelets	Exome-chip meta-analysis identifies association between variation in ANKRD26 and platelet aggregation.	Platelet aggregation	3,664 European ancestry individuals, 549 Old Order Amish (founder/genetic isolate) individuals	1,184 European ancestry individuals, 613 African American individuals	6p21.33	HCP5	rs2263316-G	0.65	1E-6	(ADP high 2)	0.123	[0.074-0.172] unit increase	Illumina [129094]	N
824	chr6	31421299	31421300	rs9469012	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	MICA, XXbac-BPG181B23.7, HCP5, Y_RNA, LINC01149, XXbac-BPG181B23.6	rs9469012-A	0.1170535	1E-24	(MHC class I polypeptide-related sequence A)	0.6944	[0.57-0.82] unit decrease	Affymetrix [509946]	N
824	chr6	31422892	31422893	rs377181093	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	6p21.33	MICB	rs377181093-A	0.908066	6E-10		0.023687	[0.016-0.031] unit decrease	Affymetrix [NR] (imputed)	N
824	chr6	31423059	31423060	rs3099847	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.33		rs3099847-C	0.91	4E-10				Affymetrix [10369434] (imputed)	N
824	chr6	31424581	31424583	rs200779223	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	6p21.33	HCP5	rs200779223-C	0.1305	2E-21		0.05074718	[0.04-0.061] unit increase	Affymetrix [~ 2500000] (imputed)	N
824	chr6	31424581	31424581	rs376918999	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	6p21.33		rs376918999-CAT	0.871308	2E-10		0.0374657	[0.026-0.049] unit increase	NR [11722792] (imputed)	N
824	chr6	31424581	31424581	rs376918999	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	6p21.33		rs376918999-CAT	0.871308	1E-11		0.0394654	[0.028-0.051] unit increase	NR [11722792] (imputed)	N
824	chr6	31424584	31424585	rs9267119	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	6p21.33	NR	rs9267119-C	NR	1E-6		1.098901	[NR]	Illumina [7158791] (imputed)	N
824	chr6	31425498	31425499	rs3131621	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (father's age at death or father's attained age)	up to 699,000 European ancestry individuals	NA	6p21.33	NR	rs3131621-A		9E-9				Illumina [458865]	N
824	chr6	31425498	31425499	rs3131621	29227965	Pilling LC	2017-12-01	Aging (Albany NY)	Human longevity: 25 genetic loci associated in 389,166 UK biobank participants.	Parental longevity (father's attained age)	415,311 British ancestry individuals	NA	6p21.33	MICA, MICB	rs3131621-A	0.629	4E-8		0.0124	[0.0081-0.0167] unit decrease	Affymetrix [11535925] (imputed)	N
824	chr6	31425498	31425499	rs3131621	29227965	Pilling LC	2017-12-01	Aging (Albany NY)	Human longevity: 25 genetic loci associated in 389,166 UK biobank participants.	Parental longevity (combined parental attained age, Martingale residuals)	389,166 British ancestry individuals	NA	6p21.33	MICA, MICB	rs3131621-A	NR	9E-8			[NR]	Affymetrix [11535925] (imputed)	N
824	chr6	31426966	31426967	rs3093956	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation Hannum age acceleration	34,449 European ancestry individuals	NA	6p21.33	NR	rs3093956-C	0.1858	9E-10		0.2428	[0.17-0.32] unit increase	Affymetrix, Illumina [7565493] (imputed)	N
824	chr6	31427375	31427376	rs113059562	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.33		rs113059562-C	0.985	2E-24				Affymetrix [10369434] (imputed)	N
824	chr6	31427394	31427395	rs9267123	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (anilides)	83,218 European ancestry cases, 96,592 European ancestry controls, 4,421 East Asian ancestry cases, 174,305 East Asian ancestry controls	NA	6p21.33		rs9267123-C	NR	4E-14		0.0685	[0.051-0.086] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
824	chr6	31427394	31427395	rs9267123	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCP5	rs9267123-C	NR	4E-11		0.0255347	[0.018-0.033] unit increase	Affymetrix [321016] (imputed)	N
824	chr6	31427394	31427395	rs9267123	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	6p21.33	NR	rs9267123-C	0.11	2E-19		1.23	[1.19-1.27]	Illumina [8468885] (imputed)	N
824	chr6	31427394	31427395	rs9267123	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	6p21.33	HCP5	rs9267123-C	0.1438	4E-6		0.0472	[0.027-0.067] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
824	chr6	31428966	31428967	rs2596472	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6p21.33	HCP5	rs2596472-A	0.742388	2E-19		0.026717115	[0.021-0.033] unit increase	Affymetrix [93095623] (imputed)	N
824	chr6	31428986	31428987	rs77349273	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p21.33	NR	rs77349273-T	0.097	2E-10	(IFNAR2_of_CD20p)			Illumina [5084123] (imputed)	N
824	chr6	31429926	31429927	rs3094228	24586183	Medici M	2014-02-27	PLoS Genet	Identification of novel genetic Loci associated with thyroid peroxidase antibodies and clinical thyroid disease.	Thyroid peroxidase antibody positivity	1,769 European ancestry cases, 16,528 European ancestry controls	922 European ancestry cases, 8,068 European ancestry controls	6p21.33	NR	rs3094228-C		4E-7		1.23	[1.13-1.33]	Affymetrix, Illumina [up to 3437411] (imputed)	N
824	chr6	31430059	31430060	rs115846244	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p21.33	NR	rs115846244-?	NR	1E-19		0.1926	[0.15-0.23] unit increase	Illumina [at least 560000] (imputed)	N
824	chr6	31430142	31430143	rs2255001	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MICB	5,365 Icelandic ancestry individuals	NA	6p21.33		rs2255001-C	0.1672	1E-33		0.301259	[0.25-0.35] unit decrease	Illumina [7506463] (imputed)	N
824	chr6	31430358	31430359	rs4360170	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	6p21.33	HCP5	rs4360170-G	0.051523	3E-15		0.03995371	[0.03-0.05] unit decrease	Affymetrix [93095623] (imputed)	N
824	chr6	31430358	31430359	rs4360170	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	6p21.33	MICA, MICB, HCP5, HLA	rs4360170-A	0.91	3E-12		1.13	[1.11-1.16]	Illumina [at least 560000] (imputed)	N
824	chr6	31430798	31430799	rs2596473	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCP5, XXbac-BPG181B23.6	rs2596473-T	NR	7E-15		0.0219013	[0.016-0.027] unit increase	Affymetrix [319769] (imputed)	N
824	chr6	31430798	31430799	rs2596473	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HCP5, XXbac-BPG181B23.6	rs2596473-T	NR	4E-14		0.021317	[0.016-0.027] unit increase	Affymetrix [319769] (imputed)	N
824	chr6	31430798	31430799	rs2596473	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HCP5, XXbac-BPG181B23.6	rs2596473-T	NR	5E-16		0.0231073	[0.018-0.029] unit increase	Affymetrix [321169] (imputed)	N
824	chr6	31430798	31430799	rs2596473	31879980	German CA	2019-12-26	Genet Epidemiol	Ordered multinomial regression for genetic association analysis of ordinal phenotypes at Biobank scale.	Hypertension	30,822 British ancestry normal blood pressure individuals, 25,242 British ancestry elevated blood pressure individuals, 50,461 British ancestry stage 1 hypertension individuals, 75,286 British ancestry stage 2 hypertension individuals, 3,754 British ancestry hypertension crisis individuals	NA	6p21.33	HCP5	rs2596473-?	NR	8E-10		0.0382034	NR unit decrease	Affymetrix [464137]	N
824	chr6	31431690	31431691	rs2255221	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C4A;C4B	5,353 Icelandic ancestry individuals	NA	6p21.33		rs2255221-T	0.05357	2E-45		0.573646	[0.49-0.65] unit increase	Illumina [7506463] (imputed)	N
824	chr6	31431690	31431691	rs2255221	21051598	Pereyra F	2010-11-04	Science	The major genetic determinants of HIV-1 control affect HLA class I peptide presentation.	HIV-1 control	516 European cases, 1,196 European controls, 341 African American cases, 892 African American controls, 117 Hispanic cases, 560 Hispanic controls	NA	6p21.33	intergenic	rs2255221-T	0.137	4E-14	(AA)	2.7	[NR]	Illumina [1384048] (imputed)	N
824	chr6	31431779	31431780	rs2395029	30661239	Nicoletti P	2019-01-19	Clin Pharmacol Ther	Drug-induced injury due to flucloxacillin: relevance of multiple HLA alleles.	Drug-induced liver injury (flucloxacillin)	197 European ancestry cases, 6,835 European ancestry controls	NA	6p21.33		rs2395029-?	0.4	6E-97		35.48	[25.38-49.58]	Illumina [NR] (imputed)	N
824	chr6	31431779	31431780	rs2395029	21051598	Pereyra F	2010-11-04	Science	The major genetic determinants of HIV-1 control affect HLA class I peptide presentation.	HIV-1 control	516 European cases, 1,196 European controls, 341 African American cases, 892 African American controls, 117 Hispanic cases, 560 Hispanic controls	NA	6p21.33	HLA-B	rs2395029-G	0.032	1E-25	(EA)	5.3	[NR]	Illumina [1384048] (imputed)	N
824	chr6	31431779	31431780	rs2395029	20041166	Fellay J	2009-12-24	PLoS Genet	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	6p21.33	HCP5, HLA-B	rs2395029-G	0.048	5E-35	(setpoint)	5.8	[NR] % increase	Illumina [NR]	N
824	chr6	31431779	31431780	rs2395029	20041166	Fellay J	2009-12-24	PLoS Genet	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	6p21.33	HCP5, HLA-B	rs2395029-?	NR	1E-11	(progression)			Illumina [NR]	N
824	chr6	31431779	31431780	rs2395029	19483685	Daly AK	2009-05-31	Nat Genet	HLA-B*5701 genotype is a major determinant of drug-induced liver injury due to flucloxacillin.	Drug-induced liver injury (flucloxacillin)	58 European ancestry cases, 282 European ancestry controls	NA	6p21.33	HCP5, HLA-B	rs2395029-?	0.05	9E-33		45.0	[19.4-105]	Illumina [866399]	N
824	chr6	31431779	31431780	rs2395029	19115949	Limou S	2009-01-01	J Infect Dis	Genomewide association study of an AIDS-nonprogression cohort emphasizes the role played by HLA genes (ANRS Genomewide Association Study 02).	AIDS progression	275 European ancestry seropositive non-progressors, 86 European ancestry seropositive rapid progressors, 1,352 European ancestry seronegative controls	(see Fellay 2007)	6p21.33	MCCD1, BAT1, TNF, LTB, HCP5, MICB	rs2395029-G	0.03	3E-19		3.47	[2.39-5.04]	Illumina [291119]	N
824	chr6	31431779	31431780	rs2395029	18369459	Liu Y	2008-04-04	PLoS Genet	A genome-wide association study of psoriasis and psoriatic arthritis identifies new disease loci.	Psoriasis	218 European ancestry cases, 519 European ancestry controls	1,153 European ancestry cases, 1,217 European ancestry controls	6p21.33	HLA-C	rs2395029-C	0.03	2E-26		4.1	[3.10-5.30]	Illumina [305983]	N
824	chr6	31431819	31431820	rs2243621	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.33		rs2243621-C	0.848	4E-26				Affymetrix [10369434] (imputed)	N
824	chr6	31432005	31432006	rs2263318	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.33	NR	rs2263318-A	0.059	1E-19		0.597	[0.49-0.71]	Illumina [11270530] (imputed)	N
824	chr6	31432124	31432125	rs2284178	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCP5	rs2284178-T	NR	2E-11		0.0209034	[0.015-0.027] unit increase	Affymetrix [323858] (imputed)	N
824	chr6	31432124	31432125	rs2284178	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HCP5	rs2284178-T	NR	1E-10		0.0200657	[0.014-0.026] unit increase	Affymetrix [127266] (imputed)	N
824	chr6	31432124	31432125	rs2284178	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCP5	rs2284178-T	NR	5E-15		0.0239755	[0.018-0.03] unit decrease	Affymetrix [323123] (imputed)	N
824	chr6	31432124	31432125	rs2284178	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	HCP5, XXbac-BPG181B23.6	rs2284178-T	0.4743202	1E-14	(EA, MHC class I polypeptide-related sequence B)	0.3444	[0.26-0.43] unit increase	Affymetrix [509946]	N
824	chr6	31433557	31433558	rs3094014	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCP5	rs3094014-A	NR	1E-14		0.0276264	[0.021-0.035] unit decrease	Affymetrix [319769] (imputed)	N
824	chr6	31433557	31433558	rs3094014	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HCP5	rs3094014-A	NR	1E-13		0.0265479	[0.02-0.034] unit decrease	Affymetrix [319769] (imputed)	N
824	chr6	31433557	31433558	rs3094014	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HCP5	rs3094014-A	NR	1E-14		0.0279942	[0.021-0.035] unit decrease	Affymetrix [321169] (imputed)	N
824	chr6	31433565	31433566	rs75640364	30298529	Stanaway IB	2018-10-08	Genet Epidemiol	The eMERGE genotype set of 83,717 subjects imputed to ~40 million variants genome wide and association with the herpes zoster medical record phenotype.	Shingles	3,201 European ancestry cases, 34,960 European ancestry controls, 398 African American cases, 5,922 African American controls, 756 Asian ancestry individuals	NA	6p21.33	HCP5	rs75640364-G	0.91	8E-9	(EA)	1.36	NR	Affymetrix, Illumina [39127678] (imputed)	N
824	chr6	31433711	31433712	rs79022003	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	6p21.33	HCP5	rs79022003-C	0.0275	3E-9		0.06434919	[0.043-0.086] unit decrease	Affymetrix [~ 2500000] (imputed)	N
824	chr6	31433808	31433809	rs112723370	33105104	Hoi-Yee Li G	2020-12-01	Eur J Endocrinol	Genome-wide meta-analysis reveals novel susceptibility loci for thyrotoxic periodic paralysis.	Thyrotoxic periodic paralysis	319 Chinese ancestry cases, 3,516 Chinese ancestry controls	NA	6p21.33	HCP5	rs112723370-T	0.7932	8E-10		2.569985	2.26932083985339-2.87064883985339	Illumina [7077246] (imputed)	N
824	chr6	31433808	31433809	rs112723370	33105104	Hoi-Yee Li G	2020-12-01	Eur J Endocrinol	Genome-wide meta-analysis reveals novel susceptibility loci for thyrotoxic periodic paralysis.	Thyrotoxic periodic paralysis	306 Chinese ancestry male cases, 3,516 Chinese ancestry controls	NA	6p21.33	HCP5	rs112723370-T	0.7925	5E-10		2.634254	1.94219737574364-3.57290860725441	Illumina [7076963] (imputed)	N
824	chr6	31434110	31434111	rs3094604	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p21.33	HCP5	rs3094604-G	NR	8E-9		0.0229124	[0.015-0.031] unit decrease	Affymetrix [323858] (imputed)	N
824	chr6	31434110	31434111	rs3094604	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Squamous cell lung carcinoma	8,350 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	6p21.33	NR	rs3094604-G	NR	2E-8		0.86	[0.82-0.91]	NR [NR] (imputed)	N
824	chr6	31434110	31434111	rs3094604	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6p21.33	HCP5	rs3094604-G	0.184684	2E-12		0.02776865	[0.02-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
824	chr6	31434110	31434111	rs3094604	25344690	Feenstra B	2014-10-26	Nat Genet	Common variants associated with general and MMR vaccine-related febrile seizures.	Febrile seizures (MMR vaccine-related)	929 European ancestry cases, 4,118 European ancestry controls	Up to 408 European ancestry cases, Up to 1,645 European ancestry controls	6p21.33	intergenic	rs3094604-A	0.833	1E-7		1.39	[1.23-1.57]	Illumina [8129524] (imputed)	N
824	chr6	31434333	31434334	rs2523679	34642315	Ferreiro-Iglesias A	2021-10-12	Nat Commun	Germline determinants of humoral immune response to HPV-16 protect against oropharyngeal cancer.	Human papilloma virus 16 positive oropharyngeal cancer	1,078 European ancestry cases, 5,256 European ancestry controls	NA	6p21.33		rs2523679-T	NR	3E-9		0.5079		Illumina [7574753] (imputed)	N
824	chr6	31434365	31434366	rs3094013	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.33	TCF19	rs3094013-G	0.8714999999999999	5E-8	(EA, men)	0.0494	[0.032-0.067] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
824	chr6	31434365	31434366	rs3094013	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6p21.33	TCF19	rs3094013-G	0.8733	2E-6	(EA, men)	0.0486	[0.028-0.069] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
824	chr6	31434365	31434366	rs3094013	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.33	TCF19	rs3094013-?	0.8714999999999999	8E-7	(EA, men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
824	chr6	31434365	31434366	rs3094013	26362759	Rothwell S	2015-09-11	Ann Rheum Dis	Dense genotyping of immune-related loci in idiopathic inflammatory myopathies confirms HLA alleles as the strongest genetic risk factor and suggests different genetic background for major clinical subgroups.	Polymyositis	931 European ancestry cases, 15,651 European ancestry controls		6p21.33	HLA	rs3094013-T	0.12	6E-76		2.97	[2.64-3.33]	Illumina [90536]	N
824	chr6	31434800	31434801	rs2523677	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	6p21.33	HCP5	rs2523677-T	0.079494	1E-12		0.033747673	[0.024-0.043] unit increase	Affymetrix [93095623] (imputed)	N
824	chr6	31435868	31435869	rs4713466	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCP5	rs4713466-T	NR	4E-8		0.0226314	[0.015-0.031] unit increase	Affymetrix [319769] (imputed)	N
824	chr6	31435868	31435869	rs4713466	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HCP5	rs4713466-T	NR	3E-8		0.0227762	[0.015-0.031] unit increase	Affymetrix [319769] (imputed)	N
824	chr6	31436031	31436032	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	VLDL cholesterol levels	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	3E-11		0.0291124	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
824	chr6	31436031	31436032	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very small VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	2E-19		0.0385398	[0.03-0.047] unit decrease	NR [11722792] (imputed)	N
824	chr6	31436031	31436032	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large LDL	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	2E-16		0.0354641	[0.027-0.044] unit decrease	NR [11722792] (imputed)	N
824	chr6	31436031	31436032	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in LDL	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	7E-17		0.035861	[0.027-0.044] unit decrease	NR [11722792] (imputed)	N
824	chr6	31436031	31436032	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in IDL	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	4E-18		0.0372214	[0.029-0.046] unit decrease	NR [11722792] (imputed)	N
824	chr6	31436031	31436032	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very small VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	6E-11		0.0281413	[0.02-0.037] unit decrease	NR [11722792] (imputed)	N
824	chr6	31436031	31436032	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	8E-13		0.0302194	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
824	chr6	31436031	31436032	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	1E-15		0.0347493	[0.026-0.043] unit decrease	NR [11722792] (imputed)	N
824	chr6	31436031	31436032	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	2E-12		0.0299561	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
824	chr6	31436031	31436032	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	2E-10		0.026718	[0.018-0.035] unit decrease	NR [11722792] (imputed)	N
824	chr6	31436031	31436032	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	6E-14		0.0322744	[0.024-0.041] unit decrease	NR [11722792] (imputed)	N
824	chr6	31436031	31436032	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very small VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	8E-12		0.0294512	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
824	chr6	31436031	31436032	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	2E-12		0.0299045	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
824	chr6	31436031	31436032	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	2E-12		0.0308819	[0.022-0.039] unit decrease	NR [11722792] (imputed)	N
824	chr6	31436031	31436032	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	3E-13		0.0308617	[0.023-0.039] unit decrease	NR [11722792] (imputed)	N
824	chr6	31436031	31436032	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	7E-14		0.0323789	[0.024-0.041] unit decrease	NR [11722792] (imputed)	N
824	chr6	31436031	31436032	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	1E-12		0.03014	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
824	chr6	31436031	31436032	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	4E-13		0.0307696	[0.022-0.039] unit decrease	NR [11722792] (imputed)	N
824	chr6	31436031	31436032	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	8E-13		0.0311502	[0.023-0.04] unit decrease	NR [11722792] (imputed)	N
824	chr6	31436031	31436032	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very small VLDL particles	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	9E-10		0.0264832	[0.018-0.035] unit decrease	NR [11722792] (imputed)	N
824	chr6	31436031	31436032	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large VLDL particles	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	8E-13		0.0301814	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
824	chr6	31436031	31436032	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small VLDL particles	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	1E-15		0.0345389	[0.026-0.043] unit decrease	NR [11722792] (imputed)	N
824	chr6	31436031	31436032	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large VLDL particles	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	7E-13		0.0303598	[0.022-0.039] unit decrease	NR [11722792] (imputed)	N
824	chr6	31436031	31436032	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of chylomicrons and extremely large VLDL particles	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	8E-11		0.0273614	[0.019-0.036] unit decrease	NR [11722792] (imputed)	N
824	chr6	31436031	31436032	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of VLDL particles	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	2E-13		0.0320006	[0.023-0.041] unit decrease	NR [11722792] (imputed)	N
824	chr6	31436031	31436032	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	4E-9		0.0250628	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
824	chr6	31436031	31436032	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	6E-12		0.0296805	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
824	chr6	31436031	31436032	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	1E-11		0.0297703	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
824	chr6	31436031	31436032	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	2E-12		0.030433	[0.022-0.039] unit decrease	NR [11722792] (imputed)	N
824	chr6	31436031	31436032	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	5E-12		0.0292494	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
824	chr6	31436031	31436032	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	1E-12		0.0304211	[0.022-0.039] unit decrease	NR [11722792] (imputed)	N
824	chr6	31436031	31436032	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	7E-11		0.0286405	[0.02-0.037] unit decrease	NR [11722792] (imputed)	N
824	chr6	31436031	31436032	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	6E-13		0.0309269	[0.023-0.039] unit decrease	NR [11722792] (imputed)	N
824	chr6	31436031	31436032	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	2E-12		0.0297343	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
824	chr6	31436464	31436465	rs77523206	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	6p21.33	NR	rs77523206-?	NR	1E-93		20.529	NR z score increase	Illumina [at least 830937] (imputed)	N
824	chr6	31436994	31436995	rs2523673	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.33		rs2523673-T	0.539	1E-32				Affymetrix [10369434] (imputed)	N
824	chr6	31436994	31436995	rs2523673	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.33		rs2523673-T	0.539	4E-28				Affymetrix [10369434] (imputed)	N
824	chr6	31436994	31436995	rs2523673	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	6p21.33	HCP5	rs2523673-C	0.4598	2E-30		0.04180668	[0.035-0.049] unit decrease	Affymetrix [~ 2500000] (imputed)	N
824	chr6	31437692	31437695	rs139043330	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	133,336 East Asian ancestry individuals	NA	6p21.33		rs139043330-G	0.154197	1E-10		0.0313843	[0.022-0.041] unit decrease	Illumina [13476509] (imputed)	N
824	chr6	31438242	31438243	rs2596450	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	6p21.33	NR	rs2596450-?	NR	8E-6		0.0425	[0.024-0.061] unit decrease	Illumina [at least 560000] (imputed)	N
824	chr6	31438367	31438368	rs2244839	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCP5	rs2244839-A	NR	8E-12		0.0228771	[0.016-0.029] unit decrease	Affymetrix [321016] (imputed)	N
824	chr6	31438389	31438390	rs2596449	26151496	Chen PL	2015-07-07	Nat Commun	Genetic determinants of antithyroid drug-induced agranulocytosis by human leukocyte antigen genotyping and genome-wide association study.	Thionamide-induced agranulocytosis in Graves' disease	21 East Asian ancestry cases with agranulocytosis, 662 East Asian ancestry cases without agranulocytosis	21 East Asian ancestry cases with agranulocytosis, 546 East Asian ancestry cases without agranulocytosis	6p21.33	HLA	rs2596449-A	0.047	2E-13	(trend)	6.35	[3.68-10.96] (allelic)	Affymetrix [522980]	N
824	chr6	31439658	31439659	rs9688839	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MICB	5,365 Icelandic ancestry individuals	NA	6p21.33		rs9688839-G	0.06745	2E-66		0.633901	[0.56-0.71] unit increase	Illumina [7506463] (imputed)	N
824	chr6	31439845	31439846	rs3094603	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	6p21.33		rs3094603-G	0.704515	7E-9		0.0251235	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
824	chr6	31440013	31440014	rs14597	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	6p21.33	NR	rs14597-A	0.433533	3E-9		0.0405708	[0.027-0.054] unit increase	Affymetrix [17914406] (imputed)	N
824	chr6	31440081	31440082	rs1055569	25897833	Thompson AG	2015-04-21	Transl Psychiatry	Genome-wide association study of behavioural and psychiatric features in human prion disease.	Psychotic symptoms and prion disease	Up to 170 cases, 5,200 controls	NA	6p21.33	HCG26	rs1055569-?	0.291	3E-6		2.36	[1.66-3.35]	Illumina [518938]	N
824	chr6	31440308	31440309	rs2523659	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large HDL	115,082 European ancestry individuals	NA	6p21.33		rs2523659-T	0.698051	3E-11		0.0290837	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
824	chr6	31440308	31440309	rs2523659	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCP5	rs2523659-G	NR	4E-8		0.0169129	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
824	chr6	31440650	31440651	rs3828889	30833571	Wiberg A	2019-03-04	Nat Commun	A genome-wide association analysis identifies 16 novel susceptibility loci for carpal tunnel syndrome.	Carpal tunnel syndrome	12,312 European ancestry cases, 389,344 European ancestry controls	NA	6p21.33	Intergenic	rs3828889-C	0.732	2E-8		1.09	[1.06-1.12]	Affymetrix [84000000] (imputed)	N
824	chr6	31440668	31440669	rs3828890	22797727	Okada Y	2012-07-15	Nat Genet	Meta-analysis identifies multiple loci associated with kidney function-related traits in east Asian populations.	Renal function-related traits (sCR)	42,257 East Asian, South Asian, and South East Asian ancestry individuals	19,662 East Asian ancestry individuals	6p21.33	MHC	rs3828890-G	0.11	3E-9		0.0069	[0.0046-0.0092] mg/dl increase	Affymetrix, Illumina [2353587] (imputed)	N
824	chr6	31440668	31440669	rs3828890	22797727	Okada Y	2012-07-15	Nat Genet	Meta-analysis identifies multiple loci associated with kidney function-related traits in east Asian populations.	Renal function-related traits (eGRFcrea)	42,451 East Asian, South Asian, and South East Asian ancestry individuals	19,636 East Asian ancestry individuals	6p21.33	MHC	rs3828890-G	0.11	1E-9		0.0079	[0.0054-0.0105] ml/min/1.73m2 decrease	Affymetrix, Illumina [2353587] (imputed)	N
824	chr6	31440968	31440968	rs9281492	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.33	HCP5	rs9281492-A	0.7482	1E-6		0.041	[0.024-0.058] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
824	chr6	31441348	31441349	rs4413654	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCP5	rs4413654-A	NR	2E-9		0.0202622	[0.014-0.027] unit decrease	Affymetrix [321016] (imputed)	N
824	chr6	31441682	31441683	rs145038238	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Treatment or medication use - levothyroxine sodium (UKB data field 20003_1141191044)	18,688 European ancestry cases, 437,588 European ancestry controls	NA	6p21.33		rs145038238-A	0.003929	1E-9		0.54	[0.36-0.72] unit increase	NR [11842647] (imputed)	N
824	chr6	31442730	31442731	rs2844503	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCP5	rs2844503-A	NR	2E-11		0.0191544	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
824	chr6	31442730	31442731	rs2844503	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HCP5	rs2844503-A	NR	6E-11		0.0185817	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
824	chr6	31442730	31442731	rs2844503	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCP5	rs2844503-A	NR	2E-11		0.0189754	[0.013-0.025] unit decrease	Affymetrix [321016] (imputed)	N
824	chr6	31442730	31442731	rs2844503	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCP5	rs2844503-A	NR	4E-10		0.0193246	[0.013-0.025] unit decrease	Affymetrix [323123] (imputed)	N
824	chr6	31442730	31442731	rs2844503	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HCP5	rs2844503-A	NR	3E-10		0.018057	[0.012-0.024] unit increase	Affymetrix [321169] (imputed)	N
824	chr6	31442781	31442782	rs3131643	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Creatinine levels	110,051 European ancestry individuals	NA	6p21.33		rs3131643-G	0.840442	8E-10		0.0296468	[0.02-0.039] unit decrease	NR [11722792] (imputed)	N
824	chr6	31442781	31442782	rs3131643	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.33		rs3131643-G	0.84	2E-102				Affymetrix [10369434] (imputed)	N
824	chr6	31442781	31442782	rs3131643	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p21.33	HCP5	rs3131643-A	0.158883	4E-12		0.027895512	[0.02-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
824	chr6	31442781	31442782	rs3131643	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.33	HCP5	rs3131643-A	0.15885	1E-15		0.04733108	[0.036-0.059] unit decrease	Affymetrix [93095623] (imputed)	N
824	chr6	31442781	31442782	rs3131643	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count (basophil)	171,846 European ancestry individuals	NA	6p21.33	HCP5	rs3131643-A	0.1597	2E-24		0.04853096	[0.039-0.058] unit decrease	Affymetrix [~ 2500000] (imputed)	N
824	chr6	31442781	31442782	rs3131643	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	6p21.33	HCP5	rs3131643-A	0.1597	4E-107		0.1077558	[0.098-0.117] unit decrease	Affymetrix [~ 2500000] (imputed)	N
824	chr6	31442911	31442912	rs79501286	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Chickenpox	107,769 European ancestry cases, 15,982 European ancestry controls	NA	6p21.33	NR	rs79501286-?	NR	2E-9		0.13	[0.088-0.172] unit increase	Illumina [at least 560000] (imputed)	N
824	chr6	31444603	31444604	rs2523655	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	150,545 East Asian ancestry individuals	NA	6p21.33		rs2523655-G	0.870322	1E-8		0.0292114	[0.019-0.039] unit decrease	Illumina [13478866] (imputed)	N
824	chr6	31445513	31445514	rs2523653	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Angina pectoris	14,007 East Asian ancestry cases, 145,158 East Asian ancestry controls	NA	6p21.33		rs2523653-G	0.805782921	3E-12		0.12027492	[0.087-0.154] unit decrease	Illumina [13426705] (imputed)	N
824	chr6	31445563	31445564	rs17206973	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p21.33	NR	rs17206973-?	NR	2E-22		0.2134	[0.17-0.26] unit decrease	Illumina [at least 560000] (imputed)	N
824	chr6	31446465	31446466	rs2248372	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCP5	rs2248372-A	NR	4E-8		0.0185638	[0.012-0.025] unit increase	Affymetrix [323858] (imputed)	N
824	chr6	31446465	31446466	rs2248372	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	HCP5	rs2248372-A	0.3318273	1E-19	(MHC class I polypeptide-related sequence B)	0.4168	[0.33-0.5] unit increase	Affymetrix [509946]	N
824	chr6	31446795	31446796	rs2248462	22286212	Urayama KY	2012-01-27	J Natl Cancer Inst	Genome-wide association study of classical Hodgkin lymphoma and Epstein-Barr virus status-defined subgroups.	Hodgkin's lymphoma	1,200 European ancestry cases, 6,417 European ancestry controls	563 European ancestry cases, 613 European ancestry controls	6p21.33	MICB	rs2248462-?	NR	7E-16	(Total cHL)	1.64	[1.45-1.85]	Illumina [502514]	N
824	chr6	31447587	31447588	rs2516513	32376702	Shen J	2020-05-06	mSphere	Genetic Association Reveals Protection against Recurrence of Clostridium difficile Infection with Bezlotoxumab Treatment.	Recurrence of Clostridium difficile infection x bezlotuxumab treatment interaction (2df test)	704 European, African American and Asian ancestry individuals	NA	6p21.33	NR	rs2516513-T	0.41	3E-8				Affymetrix [7570264] (imputed)	N
824	chr6	31448651	31448652	rs116518228	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCP5	rs116518228-T	NR	2E-8		0.032993	[0.022-0.044] unit decrease	Affymetrix [323123] (imputed)	N
824	chr6	31448861	31448862	rs3749946	24837172	Juyal G	2014-05-16	Gut	Genome-wide association scan in north Indians reveals three novel HLA-independent risk loci for ulcerative colitis.	Ulcerative colitis	603 North Indian ancestry cases, 622 North Indian ancestry controls	733 North Indian ancestry cases, 1,148 North Indian ancestry controls	6p21.33	3.8-1, HCG26	rs3749946-A	0.07	2E-15		1.97	[1.66-2.33]	Illumina [480391]	N
824	chr6	31448975	31448976	rs3099844	22399527	Kristiansson K	2012-03-07	Circ Cardiovasc Genet	Genome-wide screen for metabolic syndrome susceptibility Loci reveals strong lipid gene contribution but no evidence for common genetic basis for clustering of metabolic syndrome traits.	Metabolic syndrome	2,637 European ancestry cases, 7,927 European ancestry controls	NA	6p21.33	HCG26, MICB	rs3099844-A	0.08	2E-8	(HDL)	0.15	[NR] mmol/l decrease	Illumina [1257079] (imputed)	N
824	chr6	31448975	31448976	rs3099844	20662065	Clancy RM	2010-07-26	Arthritis Rheum	Identification of candidate loci at 6p21 and 21q22 in a genome-wide association study of cardiac manifestations of neonatal lupus.	Neonatal lupus	116 European ancestry cases, 3,351 European ancestry controls	NA	6p21.33	NFKBIL1, LTA, AIF1, TNF, LTB	rs3099844-?	0.11	5E-10		3.34	[2.29-4.89]	Illumina [346110]	N
824	chr6	31449021	31449022	rs2523650	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	6p21.33	HCG26, MICB, HCP5, MCCD1, ATP6V1G2-DDX39B, DDX39B, SNORD117, SNORD84, DDX39B-AS1, ATP6V1G2, NFKBIL1, MICA, LTA, TNF, LTB, LST1, NCR3, HLA-B, AIF1, PRRC2A, SNORA38, MIR6832, BAG6, APOM, C6orf47, GPANK1, CSNK2B, LY6G5B, LY6G5C, ABHD16A, MIR4646, LY6G6F, LY6G6E, LY6G6D, LY6G6C, C6orf25, DDAH2	rs2523650-?		5E-7	(recessive)	0.167	[0.1-0.23] unit decrease	Illumina [1492601] (imputed)	N
824	chr6	31449021	31449022	rs2523650	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	6p21.33	HCG26, MICB, HCP5, MCCD1, ATP6V1G2-DDX39B, DDX39B, SNORD117, SNORD84, DDX39B-AS1, ATP6V1G2, NFKBIL1, MICA, LTA, TNF, LTB, LST1, NCR3, HLA-B, AIF1, PRRC2A, SNORA38, MIR6832, BAG6, APOM, C6orf47, GPANK1, CSNK2B, LY6G5B, LY6G5C, ABHD16A, MIR4646, LY6G6F, LY6G6E, LY6G6D, LY6G6C, C6orf25, DDAH2	rs2523650-?		3E-6	(additive)	0.121	[0.07-0.172] unit decrease	Illumina [1492601] (imputed)	N
824	chr6	31449021	31449022	rs2523650	31189108	O'Connor D	2019-06-01	Cell Rep	Common Genetic Variations Associated with the Persistence of Immunity following Childhood Immunization.	Tetanus toxoid IgG concentrations post childhood immunization	549 European ancestry children and adolescents	1,303 European ancestry children and adolescents	6p21.33	NR	rs2523650-?	NR	1E-9		0.1117	[0.076-0.147] unit increase	Illumina [~ 6700000] (imputed)	N
824	chr6	31449619	31449620	rs2516420	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	6p21.33	MHC	rs2516420-C	0.9263	1E-7		1.1	[1.06-1.13]	Affymetrix, Illumina [16900397] (imputed)	N
824	chr6	31449641	31449642	rs2523648	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCP5	rs2523648-A	NR	4E-8		0.0208118	[0.013-0.028] unit increase	Affymetrix [323858] (imputed)	N
824	chr6	31449641	31449642	rs2523648	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HCP5	rs2523648-A	NR	5E-8		0.0207421	[0.013-0.028] unit increase	Affymetrix [127266] (imputed)	N
824	chr6	31450715	31450716	rs2905752	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	6p21.33	Intergenic	rs2905752-G	NR	2E-7		0.0193848	[0.012-0.027] unit decrease	Illumina [13519193] (imputed)	N
824	chr6	31450908	31450909	rs2523710	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	Intergenic	rs2523710-A	0.2052314	6E-15	(EA, MHC class I polypeptide-related sequence A)	0.4247	[0.32-0.53] unit decrease	Affymetrix [509946]	N
824	chr6	31451846	31451847	rs2904602	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCP5	rs2904602-A	NR	1E-9		0.0273048	[0.019-0.036] unit decrease	Affymetrix [321016] (imputed)	N
824	chr6	31452038	31452039	rs143439747	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs143439747-A	0.049	9E-14	(Natural cytotoxicity triggering receptor 3, NCR3.3003.29.2)	0.42	[0.3-0.54] unit decrease	Affymetrix [10572788] (imputed)	N
824	chr6	31452038	31452039	rs143439747	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mumps	31,227 European ancestry cases, 54,153 European ancestry controls	NA	6p21.33	NR	rs143439747-?	NR	4E-6		0.1204	[0.069-0.171] unit increase	Illumina [at least 560000] (imputed)	N
824	chr6	31452102	31452103	rs28525417	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCP5	rs28525417-G	NR	3E-8		0.0185461	[0.012-0.025] unit decrease	Affymetrix [323123] (imputed)	N
824	chr6	31452102	31452103	rs28525417	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HCP5	rs28525417-G	NR	4E-8		0.0171664	[0.011-0.023] unit increase	Affymetrix [321169] (imputed)	N
824	chr6	31452291	31452292	rs2905741	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (underestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	6p21.33	NR	rs2905741-?	NR	1E-8		5.689	NR z score increase	Illumina [at least 830937] (imputed)	N
824	chr6	31452409	31452413	rs144801046	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls, 20,367 East Asian ancestry cases, 158,359 East Asian ancestry controls	NA	6p21.33		rs144801046-C	NR	2E-13		0.1571	[0.12-0.2] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
824	chr6	31452409	31452413	rs144801046	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (beta blocking agents)	20,367 East Asian ancestry cases, 158,359 East Asian ancestry controls	NA	6p21.33		rs144801046-C	0.072674614	2E-13		0.15705363	[0.12-0.2] unit increase	Illumina [13134967] (imputed)	N
824	chr6	31452431	31452432	rs2904789	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.33	NR	rs2904789-?	NR	5E-11				Affymetrix [~ 8270000] (imputed)	N
824	chr6	31453289	31453290	rs2905736	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MICB	5,365 Icelandic ancestry individuals	NA	6p21.33		rs2905736-A	0.0328	1E-193		1.45308	[1.36-1.55] unit increase	Illumina [7506463] (imputed)	N
824	chr6	31453289	31453290	rs2905736	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	MICB, LST1, HCP5, XXbac-BPG181B23.6, XXbac-BPG16N22.5, DDX39B, ATP6V1G2, TNF, NCR3, PRRC2A, CSNK2B, GPANK1, LY6G5B, CLIC1, MSH5, VARS, Y_RNA, PPIAP9, RPL15P4, MCCD1, SNORD117, ATP6V1G2-DDX39B, AL662801.1, DDX39B-AS1, SNORD84, NFKBIL1, LTB, LTA, SNORA38, BAG6, CSNK2B-LY6G5B--991, C6orf47-AS1, C6orf47, MSH5-SAPCD1	rs2905736-A	0.03109328	2E-27	(EA, MHC class I polypeptide-related sequence B)	1.367	[1.13-1.61] unit increase	Affymetrix [509946]	N
824	chr6	31453546	31453547	rs2428501	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.33	Intergenic	rs2428501-G	NR	1E-6	(men)	0.0231006	[0.014-0.032] unit decrease	Illumina [13520550] (imputed)	N
824	chr6	31454361	31454362	rs144596166	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MICB	rs144596166-G	NR	4E-8		0.0340564	[0.022-0.046] unit decrease	Affymetrix [321016] (imputed)	N
824	chr6	31455524	31455525	rs9267235	31235810	Fung K	2019-06-24	Sci Rep	Genome-wide association study identifies loci for arterial stiffness index in 127,121 UK Biobank participants.	Arterial stiffness index	127,121 European ancestry individuals	NA	6p21.33	MICB	rs9267235-T	0.954	7E-6		0.044	[0.024-0.064] unit increase	Affymetrix [~ 10446505] (imputed)	N
824	chr6	31456107	31456108	rs28664826	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs28664826-A	0.396	1E-46	(MHC class I polypeptide-related sequence B, MICB.5102.55.3)	0.38	[0.32-0.44] unit decrease	Affymetrix [10572788] (imputed)	N
824	chr6	31456261	31456262	rs9267257	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p21.33	NR	rs9267257-?	NR	2E-9		0.0961	[0.065-0.127] unit decrease	Illumina [at least 560000] (imputed)	N
825	chr6	31457483	31457484	rs150971914	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MICB	rs150971914-T	NR	2E-15		0.0653082	[0.049-0.081] unit decrease	Affymetrix [321016] (imputed)	N
825	chr6	31457483	31457484	rs150971914	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MICB	rs150971914-T	NR	7E-9		0.0517554	[0.034-0.069] unit decrease	Affymetrix [323123] (imputed)	N
825	chr6	31458982	31458983	rs2016572	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	6p21.33	NR	rs2016572-G	0.331938	6E-12		0.0260936	[0.019-0.033] unit increase	Affymetrix [16577313] (imputed)	N
825	chr6	31459341	31459342	rs12192123	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol use disorder	57,564 European ancestry cases, 256,395 European ancestry controls	NA	6p21.33	NR	rs12192123-A	0.2321	2E-8		5.593	[NR] unit decrease	Affymetrix [7003540] (imputed)	N
825	chr6	31459971	31459972	rs2904783	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p21.33	NR	rs2904783-C	0.402	9E-6	(IFNalpha_STAT1_of_CD4p_T)			Illumina [5084123] (imputed)	N
825	chr6	31461042	31461043	rs12195665	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MICB	rs12195665-A	NR	3E-10		0.0197044	[0.014-0.026] unit increase	Affymetrix [319769] (imputed)	N
825	chr6	31461042	31461043	rs12195665	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	MICB	rs12195665-A	NR	4E-10		0.0195546	[0.013-0.026] unit increase	Affymetrix [319769] (imputed)	N
825	chr6	31461042	31461043	rs12195665	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	MICB	rs12195665-A	NR	2E-12		0.0223504	[0.016-0.029] unit increase	Affymetrix [321169] (imputed)	N
825	chr6	31461052	31461053	rs12202667	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MICB	rs12202667-C	NR	4E-8		0.018764	[0.012-0.025] unit decrease	Affymetrix [323123] (imputed)	N
825	chr6	31461131	31461132	rs2904597	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MICB	rs2904597-G	NR	3E-10		0.0229697	[0.016-0.03] unit increase	Affymetrix [323858] (imputed)	N
825	chr6	31461131	31461132	rs2904597	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	MICB	rs2904597-G	NR	4E-10		0.0228883	[0.016-0.03] unit increase	Affymetrix [127266] (imputed)	N
825	chr6	31461131	31461132	rs2904597	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.33	MICB	rs2904597-G	NR	4E-11		0.0218802	[0.015-0.028] unit increase	Affymetrix [321114] (imputed)	N
825	chr6	31461371	31461372	rs2507971	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	6p21.33	MICB	rs2507971-A	0.382584	8E-17		0.022113472	[0.017-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
825	chr6	31461371	31461372	rs2507971	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	6p21.33	MICB	rs2507971-T	0.6165	3E-49		0.05419588	[0.047-0.061] unit decrease	Affymetrix [~ 2500000] (imputed)	N
825	chr6	31461491	31461492	rs9267325	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	MICB	rs9267325-C	NR	2E-8		0.0226374	[0.015-0.031] unit increase	Affymetrix [321169] (imputed)	N
825	chr6	31461557	31461558	rs3094006	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	6p21.33	MICB	rs3094006-C	0.726	1E-12		0.02938566	[0.021-0.037] unit decrease	Affymetrix [~ 2500000] (imputed)	N
825	chr6	31461710	31461711	rs2395040	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs2395040-A	0.535	6E-23				Affymetrix [10369434] (imputed)	N
825	chr6	31461710	31461711	rs2395040	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	6p21.33	NR	rs2395040-?	NR	9E-7				Illumina [at least 7383741] (imputed)	N
825	chr6	31461955	31461956	rs113239947	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	MICB	rs113239947-T	NR	5E-10		0.0206455	[0.014-0.027] unit increase	Affymetrix [321169] (imputed)	N
825	chr6	31462323	31462324	rs2516411	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MICB	5,339 Icelandic ancestry individuals	NA	6p21.33		rs2516411-A	0.1051	9E-72		0.494444	[0.44-0.55] unit increase	Illumina [7506463] (imputed)	N
825	chr6	31462605	31462605	rs10661543	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MICB	rs10661543-CAAAA	NR	7E-9		0.0186799	[0.012-0.025] unit increase	Affymetrix [319769] (imputed)	N
825	chr6	31462605	31462605	rs10661543	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MICB	rs10661543-CAAAA	NR	2E-9		0.0215387	[0.015-0.029] unit increase	Affymetrix [323858] (imputed)	N
825	chr6	31462605	31462605	rs10661543	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	MICB	rs10661543-CAAAA	NR	1E-8		0.0183279	[0.012-0.025] unit increase	Affymetrix [319769] (imputed)	N
825	chr6	31462605	31462605	rs10661543	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	MICB	rs10661543-CAAAA	NR	2E-8		0.0201129	[0.013-0.027] unit increase	Affymetrix [127266] (imputed)	N
825	chr6	31462605	31462605	rs10661543	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MICB	rs10661543-CAAAA	NR	4E-8		0.017737	[0.011-0.024] unit decrease	Affymetrix [321016] (imputed)	N
825	chr6	31462743	31462743	rs557297301	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	MICB	rs557297301-CGAGGA	NR	4E-8		0.0173075	[0.011-0.023] unit increase	Affymetrix [321169] (imputed)	N
825	chr6	31462930	31462931	rs2534681	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MICB	rs2534681-A	NR	6E-11		0.0184043	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
825	chr6	31462930	31462931	rs2534681	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	MICB	rs2534681-A	NR	1E-10		0.0181502	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
825	chr6	31462930	31462931	rs2534681	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	MICB	rs2534681-A	NR	1E-11		0.0192736	[0.014-0.025] unit increase	Affymetrix [321169] (imputed)	N
825	chr6	31462930	31462931	rs2534681	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	6p21.33	Intergenic	rs2534681-A	0.4679	1E-10	(MTAG)	0.0106	[0.0073-0.0139] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
825	chr6	31463379	31463380	rs72844762	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.33		rs72844762-G	0.967	3E-22				Affymetrix [10369434] (imputed)	N
825	chr6	31463379	31463380	rs72844762	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	6p21.33	MICB	rs72844762-A	0.034026	3E-11		0.042991024	[0.03-0.056] unit increase	Affymetrix [93095623] (imputed)	N
825	chr6	31463490	31463491	rs2516408	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	MICB	rs2516408-A	NR	1E-10		0.0219255	[0.015-0.029] unit decrease	Affymetrix [127266] (imputed)	N
825	chr6	31465046	31465047	rs3094005	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	HLA-B, MICB, DDX39B, HCG22, HLA-C, XXbac-BPG248L24.12, ZDHHC20P2, MICA, HCP5, SNORD84, LTB, LTA, LST1, NCR3, HCG27, XXbac-BPG299F13.14, XXbac-BPG299F13.15, XXbac-BPG299F13.16, MIR6891, DHFRP2, RNU6-283P, AL671883.1, FGFR3P1, HLA-S, XXbac-BPG181B23.7, LINC01149, XXbac-BPG181B23.6, Y_RNA, XXbac-BPG16N22.5, PPIAP9, DDX39B-AS1, SNORD117, ATP6V1G2-DDX39B, AL662801.1, ATP6V1G2, NFKBIL1, TNF	rs3094005-T	0.09437751	4E-38	(MHC class I polypeptide-related sequence B)	0.9308	[0.8-1.07] unit decrease	Affymetrix [509946]	N
825	chr6	31465102	31465103	rs2534674	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	MICB, Y_RNA	rs2534674-T	0.3517588	7E-16	(EA, MHC class I polypeptide-related sequence B)	0.3579	[0.27-0.44] unit increase	Affymetrix [509946]	N
825	chr6	31466056	31466057	rs3828919	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	6p21.33	MICB	rs3828919-A	0.044243	9E-12		0.038664818	[0.028-0.05] unit increase	Affymetrix [93095623] (imputed)	N
825	chr6	31466216	31466217	rs41293864	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Strep throat	52,487 European ancestry cases, 22,017 European ancestry controls	NA	6p21.33	NR	rs41293864-?	NR	2E-8		0.0446	[0.029-0.06] unit increase	Illumina [at least 560000] (imputed)	N
825	chr6	31466286	31466287	rs9267374	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MICB	rs9267374-C	NR	1E-11		0.0224498	[0.016-0.029] unit decrease	Affymetrix [323123] (imputed)	N
825	chr6	31467991	31467992	rs9378160	30940813	Kranzler HR	2019-04-02	Nat Commun	Genome-wide association study of alcohol consumption and use disorder in 274,424 individuals from multiple populations.	Alcohol use disorder	34,658 European American cases, 167,346 European American controls, 17,267 African American cases, 39,381 African American controls, 3,449 Latino American cases, 10,726 Latino American controls, 164 East Asian American cases, 1,210 East Asian American controls, 46 South Asian American cases, 144 South Asian American controls	NA	6p21.33	MICB	rs9378160-C	0.719	2E-8	(Latino)	1.1890606	[1.13-1.25]	Affymetrix [up to 12500000] (imputed)	N
825	chr6	31468210	31468211	rs188935761	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 142,336 Japanese ancestry controls	NA	6p21.33	MICB	rs188935761-?	NR	5E-6		0.613998	[0.35-0.88] unit increase	Illumina [19707525] (imputed)	N
825	chr6	31469590	31469591	rs2534664	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MICB	rs2534664-A	NR	2E-13		0.0226003	[0.017-0.029] unit decrease	Affymetrix [323123] (imputed)	N
825	chr6	31471800	31471801	rs2855811	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.33	NR	rs2855811-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
825	chr6	31472719	31472720	rs2855812	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.33	NR	rs2855812-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
825	chr6	31472719	31472720	rs2855812	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma and major depressive disorder	46,802 European ancestry asthma cases, 59,851 European ancestry major depressive disorder cases, 460,635 European ancestry controls	NA	6p21.33	AIF1, APOM, ATP6V1G2, BAG6, C6orf15, C6orf25, C6orf47, C6orf48, CDSN, CLIC1, CSNK2B, DDAH2, DDX39B, HCG26, HCG27, HCP5, HLA-B, HSPA1A, HSPA1B, HSPA1L, LSM2, LST1, LTA, LTB, LY6G5B, LY6G5C, LY6G6C, LY6G6D, LY6G6E, LY6G6F, MCCD1, MICA, MICB, MIR4646, MIR6832, MIR6891, MSH5, MSH5-SAPCD1, NCR3, NEU1, NFKBIL1, POU5F1, PRRC2A, PSORS1C1, PSORS1C2, PSORS1C3, SAPCD1, SLC44A4, SNORA38, SNORD48, SNORD52, SNORD84, SNORD117, TCF19, TNF, VARS, VWA7, HLA-C, CCHCR1, GPANK1, ABHD16A	rs2855812-?	NR	2E-16				Affymetrix [up to 13554551] (imputed)	N
825	chr6	31472719	31472720	rs2855812	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma (childhood onset)	9,676 European ancestry cases, 347,481 European ancestry controls	NA	6p21.33	ABHD16A, AIF1, APOM, ATP6V1G2, ATP6V1G2-DDX39B, BAG6, C6orf15, C6orf25, C6orf47, C6orf48, CCHCR1, CDSN, CLIC1, CSNK2B, DDAH2, DDX39B, GPANK1, HCG26, HCG27, HCP5, HLA-B, HLA-C, HSPA1A, HSPA1B, HSPA1L, LSM2, LST1, LTA, LTB, LY6G5B, LY6G5C, LY6G6C, LY6G6D, LY6G6E, LY6G6F, MCCD1, MICA, MICB, MIR4646, MIR6832, MIR6891, MSH5, MSH5-SAPCD1, NCR3, NEU1, NFKBIL1, POU5F1, PRRC2A, PSORS1C1, PSORS1C2, PSORS1C3, SAPCD1, SLC44A4, SNORA38, SNORD48, SNORD52, SNORD84, SNORD117, TCF19, TNF, VARS, VWA7	rs2855812-?	NR	4E-7		0.118096	[0.071-0.165] unit decrease	Affymetrix [8274727] (imputed)	N
825	chr6	31472719	31472720	rs2855812	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs2855812-G	0.7990625	8E-9	(PDIA5, 5593_11_3)	0.1749456	[0.12-0.23] unit decrease	Illumina [> 1000000] (imputed)	N
825	chr6	31472719	31472720	rs2855812	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs2855812-G	0.7990625	8E-14	(C4A C4B, 4481_34_2)	0.23044567	[0.17-0.29] unit increase	Illumina [> 1000000] (imputed)	N
825	chr6	31472719	31472720	rs2855812	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs2855812-G	0.7990625	7E-11	(C2, 3186_2_2)	0.20260093	[0.14-0.26] unit decrease	Illumina [> 1000000] (imputed)	N
825	chr6	31472719	31472720	rs2855812	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs2855812-G	0.7990625	5E-9	(PILRA, 8683_119_3)	0.17610262	[0.12-0.24] unit decrease	Illumina [> 1000000] (imputed)	N
825	chr6	31472719	31472720	rs2855812	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs2855812-G	0.7990625	3E-25	(ISG15, 14148_2_3)	0.31585807	[0.26-0.37] unit decrease	Illumina [> 1000000] (imputed)	N
825	chr6	31472719	31472720	rs2855812	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs2855812-G	0.7990625	2E-9	(RACGAP1, 13587_10_3)	0.18150227	[0.12-0.24] unit decrease	Illumina [> 1000000] (imputed)	N
825	chr6	31472719	31472720	rs2855812	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs2855812-G	0.7990625	2E-25	(MICB, 9328_55_3)	0.31198063	[0.25-0.37] unit increase	Illumina [> 1000000] (imputed)	N
825	chr6	31472719	31472720	rs2855812	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs2855812-G	0.7990625	2E-19	(FTMT, 8048_9_3)	0.27116117	[0.21-0.33] unit increase	Illumina [> 1000000] (imputed)	N
825	chr6	31472719	31472720	rs2855812	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs2855812-G	0.7990625	2E-126	(MICB, 5102_55_3)	0.69572484	[0.64-0.75] unit increase	Illumina [> 1000000] (imputed)	N
825	chr6	31472719	31472720	rs2855812	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs2855812-G	0.7990625	1E-10	(CREB3L4, 11308_8_3)	0.18975821	[0.13-0.25] unit decrease	Illumina [> 1000000] (imputed)	N
825	chr6	31472719	31472720	rs2855812	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls, 2,149 African ancestry cases, 6,055 African ancestry controls, 1,239 Japanese ancestry cases, 3,976 Japanese ancestry controls, 606 Latino cases, 792 Latino controls	NA	6p21.33	MICB, HCP5, MCCD1	rs2855812-T	0.23	9E-12		1.1	[1.07-1.13]	Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
825	chr6	31472719	31472720	rs2855812	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls	NA	6p21.33	MICB, MICA, MCCD1	rs2855812-T	0.23	3E-10		0.09	[0.07-0.11] unit increase	Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
825	chr6	31472719	31472720	rs2855812	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p21.33	NR	rs2855812-?	NR	1E-16		0.213	[0.16-0.26] unit increase	Illumina [at least 560000] (imputed)	N
825	chr6	31472719	31472720	rs2855812	28235828	Traglia M	2017-04-03	G3 (Bethesda)	Independent Maternal and Fetal Genetic Effects on Midgestational Circulating Levels of Environmental Pollutants.	Midgestational circulating levels of PBDEs	329 Hispanic mothers, 273 European ancestry mothers, 122 Asian ancestry mothers, 23 South Asian ancestry mothers, 21 African American mothers, 22 other ancestry mothers	NA	6p21.33	MICB	rs2855812-?		8E-7	(BDE-47)	0.33	[0.19-0.47] unit decrease	Affymetrix [629686]	N
825	chr6	31472719	31472720	rs2855812	28235828	Traglia M	2017-04-03	G3 (Bethesda)	Independent Maternal and Fetal Genetic Effects on Midgestational Circulating Levels of Environmental Pollutants.	Midgestational circulating levels of PBDEs	329 Hispanic mothers, 273 European ancestry mothers, 122 Asian ancestry mothers, 23 South Asian ancestry mothers, 21 African American mothers, 22 other ancestry mothers	NA	6p21.33	MICB	rs2855812-?		3E-7	(BDE-100)	0.35	[0.21-0.49] unit decrease	Affymetrix [629686]	N
825	chr6	31472719	31472720	rs2855812	28235828	Traglia M	2017-04-03	G3 (Bethesda)	Independent Maternal and Fetal Genetic Effects on Midgestational Circulating Levels of Environmental Pollutants.	Midgestational circulating levels of PBDEs	329 Hispanic mothers, 273 European ancestry mothers, 122 Asian ancestry mothers, 23 South Asian ancestry mothers, 21 African American mothers, 22 other ancestry mothers	NA	6p21.33	MICB	rs2855812-?		2E-6	(Sum PBDE)	0.29	[0.17-0.41] unit decrease	Affymetrix [629686]	N
825	chr6	31472719	31472720	rs2855812	21946350	Soler Artigas M	2011-09-25	Nat Genet	Genome-wide association and large-scale follow up identifies 16 new loci influencing lung function.	Pulmonary function	48,201 European ancestry individuals	46,411 European ancestry individuals	6p21.33	MICB	rs2855812-T	NR	2E-7	(FEV1)	0.03	[0.018-0.042] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
825	chr6	31473956	31473957	rs3134900	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MICB	5,365 Icelandic ancestry individuals	NA	6p21.33		rs3134900-G	0.08239	7E-220		1.01394	[0.95-1.08] unit decrease	Illumina [7506463] (imputed)	N
825	chr6	31473956	31473957	rs3134900	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	MICB	rs3134900-G	0.14	3E-101	(MHC class I polypeptide-related sequence B, MICB.5102.55.3)	0.71	[0.65-0.77] unit decrease	Affymetrix [10572788] (imputed)	N
825	chr6	31474819	31474820	rs41293883	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Eczema	7,884 European ancestry cases, 239,773 European ancestry controls	21,000 cases, 96,000 controls	6p21.33	HLA-DQB1	rs41293883-?	0.95847	2E-14		1.4541224	[1.33-1.6]	Affymetrix [15688218] (imputed)	N
825	chr6	31475055	31475056	rs41273040	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	6p21.33	MICB	rs41273040-G	0.976386	4E-18		0.0571663	[0.044-0.07] unit decrease	Affymetrix [NR] (imputed)	N
825	chr6	31475055	31475056	rs41273040	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.33	NR	rs41273040-?	NR	6E-9				Affymetrix [~ 8270000] (imputed)	N
825	chr6	31475126	31475127	rs3131638	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	6p21.33	NR	rs3131638-G	0.7739	8E-10		1.0449321	[1.03-1.06]	Affymetrix, Illumina [NR] (imputed)	N
825	chr6	31475485	31475486	rs3132468	22001756	Khor CC	2011-10-16	Nat Genet	Genome-wide association study identifies susceptibility loci for dengue shock syndrome at MICB and PLCE1.	Dengue shock syndrome	2,008 Vietnamese ancestry child cases, 2,018 Vietnamese ancestry child controls	1,737 Vietnamese ancestry child cases, 2,934 Vietnamese ancestry child controls	6p21.33	MICB	rs3132468-?	0.13	4E-11		1.34	[1.23-1.46]	Illumina [481342]	N
825	chr6	31475654	31475655	rs9380260	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MICB	rs9380260-A	NR	1E-12		0.0271773	[0.02-0.035] unit decrease	Affymetrix [323123] (imputed)	N
825	chr6	31476296	31476297	rs62395355	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.33		rs62395355-C	0.821	9E-12				Affymetrix [10369434] (imputed)	N
825	chr6	31476296	31476297	rs62395355	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MICB	rs62395355-A	NR	4E-12		0.0253688	[0.018-0.033] unit increase	Affymetrix [319769] (imputed)	N
825	chr6	31476296	31476297	rs62395355	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	MICB	rs62395355-A	NR	8E-12		0.0250776	[0.018-0.032] unit increase	Affymetrix [319769] (imputed)	N
825	chr6	31476296	31476297	rs62395355	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	MICB	rs62395355-A	NR	3E-10		0.0233476	[0.016-0.031] unit increase	Affymetrix [321169] (imputed)	N
825	chr6	31476457	31476458	rs3130614	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	6p21.33	NR	rs3130614-A	0.119161214504899	1E-11		0.013812465	[0.0098-0.0178] unit decrease	NR [NR]	N
825	chr6	31476457	31476458	rs3130614	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	6p21.33	NR	rs3130614-A	0.119161214504899	9E-11		0.017454144	[0.012-0.023] unit decrease	NR [NR]	N
825	chr6	31476457	31476458	rs3130614	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	6p21.33	NR	rs3130614-A	0.119161214504899	1E-10		0.014875911	[0.01-0.019] unit decrease	NR [NR]	N
825	chr6	31476457	31476458	rs3130614	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	6p21.33	NR	rs3130614-A	0.119161214504899	1E-11		0.011892368	[0.0085-0.0153] unit decrease	NR [NR]	N
825	chr6	31476457	31476458	rs3130614	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	6p21.33	MICB	rs3130614-T	NR	3E-10		0.19759	[0.14-0.26] unit increase	Illumina [at least 950000] (imputed)	N
825	chr6	31476457	31476458	rs3130614	26291516	Miller FW	2015-08-20	Genes Immun	Genome-wide association study identifies HLA 8.1 ancestral haplotype alleles as major genetic risk factors for myositis phenotypes.	Myositis	1,710 European ancestry cases, 4,724 European ancestry controls	NA	6p21.33	MICB	rs3130614-A	NR	4E-48		2.31	[NR]	Illumina [NR] (imputed)	N
825	chr6	31476853	31476854	rs2844498	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MICB	rs2844498-T	NR	7E-13		0.0226459	[0.016-0.029] unit increase	Affymetrix [323858] (imputed)	N
825	chr6	31476853	31476854	rs2844498	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	MICB	rs2844498-T	NR	8E-12		0.0215973	[0.015-0.028] unit increase	Affymetrix [127266] (imputed)	N
825	chr6	31478950	31478951	rs9267431	33692975	Buda P	2021-02-22	Front Pediatr	Association Between rs12037447, rs146732504, rs151078858, rs55723436, and rs6094136 Polymorphisms and Kawasaki Disease in the Population of Polish Children.	Kawasaki disease	119 European ancestry cases, 6,071 European ancestry controls	NA	6p21.33	MICB	rs9267431-A	0.1194	2E-6		2.113	1.547-2.886	Illumina [164395]	N
825	chr6	31478985	31478986	rs2246618	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MICB	rs2246618-T	NR	2E-11		0.0226591	[0.016-0.029] unit decrease	Affymetrix [323858] (imputed)	N
825	chr6	31478985	31478986	rs2246618	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume (adjusted for hypertension)	46,055 European ancestry individuals, 2,469 African American individuals	NA	6p21.33	MICB	rs2246618-C	0.3118	7E-6		0.0286	[0.016-0.041] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
825	chr6	31478985	31478986	rs2246618	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume (adjusted for hypertension)	46,055 European ancestry individuals	NA	6p21.33	MICB	rs2246618-C	0.3118	4E-6		0.029	[0.017-0.041] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
825	chr6	31478985	31478986	rs2246618	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	48,454 European ancestry individuals	NA	6p21.33	MICB	rs2246618-C	0.3118	7E-7		0.0307	[0.019-0.043] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
825	chr6	31478985	31478986	rs2246618	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	2,516 African American individuals, 48,454 European ancestry individuals	NA	6p21.33	MICB	rs2246618-C	0.3118	2E-6		0.03	[0.018-0.042] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
825	chr6	31479644	31479645	rs3132463	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MICB	rs3132463-T	NR	5E-9		0.0213533	[0.014-0.028] unit increase	Affymetrix [323123] (imputed)	N
825	chr6	31480667	31480668	rs3132461	28806749	Leo PJ	2017-08-14	PLoS Genet	Defining the genetic susceptibility to cervical neoplasia-A genome-wide association study.	Cervical cancer	2,866 European ancestry cases, 6,481 European ancestry controls	NA	6p21.33	MICB, MCCD1	rs3132461-G	NR	2E-13		1.358	[NR]	Illumina [10863230] (imputed)	N
825	chr6	31481091	31481092	rs3132459	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MICB	rs3132459-C	NR	4E-8		0.0179194	[0.012-0.024] unit increase	Affymetrix [321016] (imputed)	N
825	chr6	31481269	31481269	rs5875324	30787463	Escala-Garcia M	2019-02-21	Br J Cancer	Genome-wide association study of germline variants and breast cancer-specific mortality.	Breast cancer specific mortality in breast cancer	7,697 European ancestry cases, 88,964 European ancestry controls	NA	6p21.33	NR	rs5875324-?	NR	2E-6		0.8744475	[0.83-0.92]	Affymetrix, Illumina [~ 10400000] (imputed)	N
825	chr6	31481298	31481299	rs2516399	21738478	Okada Y	2011-06-30	PLoS Genet	Identification of nine novel loci associated with white blood cell subtypes in a Japanese population.	White blood cell types	8,794 Japanese ancestry individuals	5,998 Japanese ancestry individuals	6p21.33	MHC	rs2516399-A	0.81	2E-12	(eosinophil count)	0.105	[0.08-0.14] unit increase	Illumina [2178645] (imputed)	N
825	chr6	31483135	31483136	rs2844495	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG16N22.5	rs2844495-G	NR	2E-18		0.0261655	[0.02-0.032] unit increase	Affymetrix [319769] (imputed)	N
825	chr6	31483135	31483136	rs2844495	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG16N22.5	rs2844495-G	NR	2E-18		0.0261197	[0.02-0.032] unit increase	Affymetrix [319769] (imputed)	N
825	chr6	31483135	31483136	rs2844495	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG16N22.5	rs2844495-G	NR	1E-10		0.0210221	[0.015-0.027] unit decrease	Affymetrix [323123] (imputed)	N
825	chr6	31483135	31483136	rs2844495	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG16N22.5	rs2844495-G	NR	3E-16		0.024738	[0.019-0.031] unit increase	Affymetrix [321169] (imputed)	N
825	chr6	31483205	31483206	rs62397979	31320639	Hillary RF	2019-07-18	Nat Commun	Genome and epigenome wide studies of neurological protein biomarkers in the Lothian Birth Cohort 1936.	Neurological blood protein biomarker levels	750 European ancestry individuals	NA	6p21.33	XXbac-BPG16N22.5	rs62397979-G	0.0469	1E-26	(Alpha-2-MRAP)	1.36939	[1.12-1.62] unit increase	Illumina [8683751] (imputed)	N
825	chr6	31483699	31483700	rs17200698	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	Y_RNA, MICB, PPIAP9, XXbac-BPG16N22.5, RPL15P4, MCCD1, ATP6V1G2, ATP6V1G2-DDX39B, NFKBIL1, LST1, NCR3	rs17200698-T	0.0361809	1E-11	(EA, MHC class I polypeptide-related sequence A)	0.813	[0.58-1.04] unit increase	Affymetrix [509946]	N
825	chr6	31484516	31484517	rs2395045	28031287	Sasayama D	2016-11-26	Hum Mol Genet	Genome-wide quantitative trait loci mapping of the human cerebrospinal fluid proteome.	Cerebrospinal fluid biomarker levels	133 Japanese ancestry individuals.	NA	6p21.33	NR	rs2395045-?	NR	6E-9	(MHC class I polypeptide-related sequence B)			Illumina [514227]	N
825	chr6	31484682	31484683	rs3131631	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cervical cancer	6,563 European ancestry cases, 410,350 European ancestry controls	NA	6p21.33		rs3131631-G	NR	5E-10		1.1332	NR	Affymetrix [7846216] (imputed)	N
825	chr6	31485100	31485101	rs2516491	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG16N22.5	rs2516491-C	NR	1E-8		0.0197328	[0.013-0.027] unit decrease	Affymetrix [323858] (imputed)	N
825	chr6	31485353	31485354	rs3131630	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG16N22.5	rs3131630-G	NR	1E-9		0.0197999	[0.013-0.026] unit decrease	Affymetrix [319769] (imputed)	N
825	chr6	31485353	31485354	rs3131630	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG16N22.5	rs3131630-G	NR	3E-9		0.019409	[0.013-0.026] unit decrease	Affymetrix [319769] (imputed)	N
825	chr6	31486404	31486405	rs149066340	30111768	Yao C	2018-08-15	Nat Commun	Genome-wide mapping of plasma protein QTLs identifies putatively causal genes and pathways for cardiovascular disease.	Blood protein levels	6861 European ancestry individuals	4298 European ancestry individuals	6p21.33		rs149066340-C	0.979	1E-36	(C2)	0.92	unit increase	Affymetrix, Illumina [8509364] (imputed)	N
825	chr6	31487453	31487454	rs34451538	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs34451538-G	0.971	6E-20				Affymetrix [10369434] (imputed)	N
825	chr6	31487453	31487454	rs34451538	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.33	PPIAP9	rs34451538-A	0.028767	2E-9		0.044486254	[0.03-0.059] unit decrease	Affymetrix [93095623] (imputed)	N
825	chr6	31487953	31487954	rs3132455	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large HDL	115,082 European ancestry individuals	NA	6p21.33		rs3132455-G	0.653225	3E-10		0.0260764	[0.018-0.034] unit increase	NR [11722792] (imputed)	N
825	chr6	31489643	31489644	rs3132454	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PPIAP9	rs3132454-G	NR	2E-8		0.0168062	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
825	chr6	31489643	31489644	rs3132454	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PPIAP9	rs3132454-G	NR	4E-12		0.0205728	[0.015-0.026] unit decrease	Affymetrix [321016] (imputed)	N
825	chr6	31489643	31489644	rs3132454	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	PPIAP9	rs3132454-G	NR	2E-8		0.0183183	[0.012-0.025] unit decrease	Affymetrix [323123] (imputed)	N
825	chr6	31491130	31491131	rs3093992	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	PPIAP9	rs3093992-C	NR	3E-8		0.0191109	[0.012-0.026] unit increase	Affymetrix [323123] (imputed)	N
825	chr6	31492015	31492016	rs114060326	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)(bidirectional)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.33		rs114060326-G	NR	3E-10				Affymetrix [7846216] (imputed)	N
825	chr6	31492452	31492453	rs3093988	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	RPL15P4	rs3093988-A	NR	8E-12		0.0266126	[0.019-0.034] unit increase	Affymetrix [323123] (imputed)	N
825	chr6	31492452	31492453	rs3093988	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	316,772 European ancestry male individuals	NA	6p21.33	NR	rs3093988-A	0.1856	8E-20		0.0203	[0.016-0.025] unit decrease	NR [~ 27400000] (imputed)	N
825	chr6	31495618	31495619	rs2734580	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	RPL15P4	rs2734580-T	NR	8E-16		0.0360498	[0.027-0.045] unit decrease	Affymetrix [323123] (imputed)	N
825	chr6	31496568	31496569	rs2516482	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.33	MCCD1	rs2516482-G	0.195446	1E-15		0.038059197	[0.029-0.047] unit increase	Affymetrix [93095623] (imputed)	N
825	chr6	31496924	31496925	rs3093983	33649182	Penova M	2021-03-01	Proc Natl Acad Sci U S A	Genome wide association study of HTLV-1-associated myelopathy/tropical spastic paraparesis in the Japanese population.	HTLV-1 associated myelopathy	731 Japanese ancestry cases, 846 Japanese ancestry controls	NA	6p21.33		rs3093983-G	0.08	4E-7		1.86	[1.47-2.37]	Illumina [126394]	N
825	chr6	31499602	31499603	rs3853601	22197932	Paternoster L	2011-12-25	Nat Genet	Meta-analysis of genome-wide association studies identifies three new risk loci for atopic dermatitis.	Atopic dermatitis	5,606 European ancestry cases, 20,565 European ancestry controls	5,419 European ancestry cases, 19,833 European ancestry controls	6p21.33	BAT1	rs3853601-G	0.12	2E-6		1.13	[1.08-1.19]	Affymetrix, Illumina [~ 2500000] (imputed)	N
825	chr6	31504193	31504194	rs114751021	33841421	Li J	2021-03-25	Front Immunol	Variants at the MHC Region Associate With Susceptibility to <i>Clostridioides difficile</i> Infection: A Genome-Wide Association Study Using Comprehensive Electronic Health Records.	Clostridioides difficle infection in antibiotics-users	587 European ancestry cases, 3,166 European ancestry controls	NA	6p21.33	SNORD117	rs114751021-G	0.024	5E-8		2.41	[1.84-3.09]	Illumina [64973696] (imputed)	N
825	chr6	31505479	31505480	rs2734583	21912425	Tohkin M	2011-09-13	Pharmacogenomics J	A whole-genome association study of major determinants for allopurinol-related Stevens-Johnson syndrome and toxic epidermal necrolysis in Japanese patients.	Stevens-Johnson syndrome and toxic epidermal necrolysis (SJS-TEN)	14 Japanese ancestry cases, 991 Japanese ancestry controls	NA	6p21.33	PSORS1C1, PSORS1C3, BAT1, HLA-C, MICC, PPIAP9, POLR2LP, CCHCR1, TCF19, HLA-B*5801, HCP5, POU5F1	rs2734583-?	0.0055	2E-8		66.8	[19.8-225.0]	Illumina [890321]	N
825	chr6	31505789	31505790	rs9267485	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	6p21.33	DDX39B	rs9267485-G	NR	2E-17		0.0531442	[0.041-0.065] unit decrease	Illumina [13520550] (imputed)	N
825	chr6	31506690	31506691	rs2071596	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	6p21.33	DDX39B	rs2071596-A	0.163229	1E-42		0.04289182	[0.037-0.049] unit increase	Affymetrix [93095623] (imputed)	N
825	chr6	31506690	31506691	rs2071596	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6p21.33	DDX39B	rs2071596-A	0.163228	9E-50		0.046432465	[0.04-0.053] unit increase	Affymetrix [93095623] (imputed)	N
825	chr6	31506690	31506691	rs2071596	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6p21.33	DDX39B	rs2071596-A	0.163185	2E-27		0.03458288	[0.028-0.041] unit decrease	Affymetrix [93095623] (imputed)	N
825	chr6	31506690	31506691	rs2071596	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6p21.33	DDX39B	rs2071596-A	0.163195	5E-24		0.030947343	[0.025-0.037] unit increase	Affymetrix [93095623] (imputed)	N
825	chr6	31507937	31507938	rs2269476	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	6p21.33	DDX39B, ATP6V1G2-DDX39B	rs2269476-A	0.179	2E-24		0.04806173	[0.039-0.057] unit increase	Affymetrix [~ 2500000] (imputed)	N
825	chr6	31508452	31508453	rs34788230	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	6p21.33	DDX39B	rs34788230-G	0.6263	4E-13		0.02679379	[0.02-0.034] unit decrease	Affymetrix [~ 2500000] (imputed)	N
825	chr6	31510923	31510924	rs2844509	35023831	Chong M	2022-01-13	Elife	GWAS and ExWAS of blood Mitochondrial DNA copy number identifies 71 loci and highlights a potential causal role in dementia.	Mitochondrial DNA copy number	395,718 British, Irish, Other White, South Asian, African ancestry individuals	NA	6p21.33	NR	rs2844509-G	0.242812	3E-8		0.014	[0.0091-0.0189] unit increase	Affymetrix [23037915] (imputed)	N
825	chr6	31513401	31513402	rs2239705	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	6p21.33	NR	rs2239705-?		8E-9	(MICA)			Illumina [NR]	N
825	chr6	31514246	31514247	rs9267488	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p21.33	NR	rs9267488-?	NR	3E-6		4.68	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
825	chr6	31514246	31514247	rs9267488	26291516	Miller FW	2015-08-20	Genes Immun	Genome-wide association study identifies HLA 8.1 ancestral haplotype alleles as major genetic risk factors for myositis phenotypes.	Myositis	1,710 European ancestry cases, 4,724 European ancestry controls	NA	6p21.33	ATP6V1G2, DDX39B	rs9267488-G	NR	6E-49		2.32	[NR]	Illumina [NR] (imputed)	N
825	chr6	31514447	31514448	rs34568880	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	6p21.33	ATP6V1G2	rs34568880-C	0.986687	6E-10		0.0562557	[0.038-0.074] unit decrease	Affymetrix [NR] (imputed)	N
825	chr6	31515762	31515763	rs2239708	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	6p21.33	ATP6V1G2, NFKBIL1	rs2239708-T	0.033249	2E-12		0.04410994	[0.032-0.056] unit increase	Affymetrix [93095623] (imputed)	N
825	chr6	31515798	31515799	rs2071591	26562150	Seldin MF	2015-10-10	Mol Med	Genome-wide Association Study of Late-Onset Myasthenia Gravis: Confirmation of TNFRSF11A, and Identification of ZBTB10 and Three Distinct HLA Associations.	Late-onset myasthenia gravis	532 European ancestry cases, 2,128 European ancestry controls	NA	6p21.33	MHC_Class III	rs2071591-?	NR	4E-12				Illumina [6175472] (imputed)	N
825	chr6	31517902	31517903	rs2523501	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (multivariate analysis)	477,968 European ancestry individuals	NA	6p21.33	NFKBIL1	rs2523501-C	0.152	8E-10		0.036	[0.024-0.048] unit decrease	NR [NR] (imputed)	N
825	chr6	31519652	31519653	rs2516383	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	NFKBIL1	rs2516383-C	NR	3E-9		0.0206882	[0.014-0.027] unit increase	Affymetrix [323123] (imputed)	N
825	chr6	31520425	31520426	rs6916921	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	LST1, NCR3, ATP6V1G2, TNF, NFKBIL1, LTA, LTB	rs6916921-T	0.1330321	2E-23	(Natural cytotoxicity triggering receptor 3)	0.6188	[0.5-0.74] unit decrease	Affymetrix [509946]	N
825	chr6	31520657	31520658	rs34492353	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.33	NR	rs34492353-?	NR	1E-13				Affymetrix [~ 8270000] (imputed)	N
825	chr6	31520657	31520658	rs34492353	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.33	NR	rs34492353-?	NR	6E-12				Affymetrix [~ 8270000] (imputed)	N
825	chr6	31521595	31521596	rs34268928	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	6p21.33	NFKBIL1	rs34268928-T	0.02077	2E-9		0.04651516	[0.031-0.062] unit decrease	Affymetrix [93095623] (imputed)	N
825	chr6	31522668	31522669	rs6929796	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	6p21.33	NFKBIL1	rs6929796-A	0.172	3E-8		0.0092	[0.0059-0.0125] unit decrease	Affymetrix, Illumina [33811881] (imputed)	N
825	chr6	31522668	31522669	rs6929796	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	6p21.33	NFKBIL1	rs6929796-A	0.163327	3E-33		0.036523763	[0.031-0.042] unit increase	Affymetrix [93095623] (imputed)	N
825	chr6	31522668	31522669	rs6929796	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6p21.33	NFKBIL1	rs6929796-A	0.163358	2E-18		0.030205907	[0.023-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
825	chr6	31522668	31522669	rs6929796	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	6p21.33	NFKBIL1	rs6929796-A	0.1634	8E-16		0.03895272	[0.029-0.048] unit increase	Affymetrix [~ 2500000] (imputed)	N
825	chr6	31522668	31522669	rs6929796	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	6p21.33	NFKBIL1	rs6929796-A	0.1635	5E-17		0.04056459	[0.031-0.05] unit increase	Affymetrix [~ 2500000] (imputed)	N
825	chr6	31522668	31522669	rs6929796	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	6p21.33	NFKBIL1	rs6929796-A	0.1635	7E-11		0.03154443	[0.022-0.041] unit increase	Affymetrix [~ 2500000] (imputed)	N
825	chr6	31522668	31522669	rs6929796	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	6p21.33	NFKBIL1	rs6929796-A	0.1635	7E-12		0.03316401	[0.024-0.043] unit increase	Affymetrix [~ 2500000] (imputed)	N
825	chr6	31523669	31523670	rs35597084	32592749	Butler-Laporte G	2020-06-24	Clin Microbiol Infect	Elevated body-mass index is associated with an increased risk of infectious disease admissions and mortality: a mendelian randomization study.	Sepsis (90-day mortality)	341 European ancestry cases, 1,696 European ancestry controls	NA	6p21.33	NFKBIL1	rs35597084-C	0.96	4E-8		0.17	[0.11-0.23] unit decrease	NR [NR]	N
825	chr6	31524850	31524851	rs2857605	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	6p21.33	NFKBIL1	rs2857605-C	0.21061104132454	6E-14		0.0672	[0.05-0.085] unit decrease	NR [5035015] (imputed)	N
825	chr6	31525447	31525448	rs2230365	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.33		rs2230365-C	0.859	7E-16				Affymetrix [10369434] (imputed)	N
825	chr6	31525447	31525448	rs2230365	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	NFKBIL1	rs2230365-T	NR	1E-12		0.0288606	[0.021-0.037] unit decrease	Affymetrix [321016] (imputed)	N
825	chr6	31525447	31525448	rs2230365	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	NFKBIL1	rs2230365-T	NR	1E-11		0.0299572	[0.021-0.039] unit decrease	Affymetrix [323123] (imputed)	N
825	chr6	31525447	31525448	rs2230365	26414677	Day FR	2015-11-01	Nat Genet	Large-scale genomic analyses link reproductive aging to hypothalamic signaling, breast cancer susceptibility and BRCA1-mediated DNA repair.	Menopause (age at onset)	up to 69,626 European ancestry women	NA	6p21.33	MSH5, HLA	rs2230365-C	0.84	8E-10		0.17	[0.11-0.23] years decrease	Affymetrix, Illumina [~ 2600000] (imputed)	N
825	chr6	31528129	31528130	rs4947324	33235445	Lee YJ	2020-11-17	Int J Chron Obstruct Pulmon Dis	A Genome-Wide Association Study in Early COPD: Identification of One Major Susceptibility Loci.	Early chronic obstructive pulmonary disease in never smokers	38 Korean ancestry cases, 1,778 Korean ancestry controls	NA	6p21.33	NFKBIL1	rs4947324-?	NR	8E-6	(PS matching analysis)	4.16	NR	Affymetrix [345072]	N
825	chr6	31529333	31529334	rs2516392	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.33		rs2516392-G	0.6215470000000001	7E-47		1.0639546	[1.05-1.08]	Affymetrix, Illumina [9851866] (imputed)	N
825	chr6	31530672	31530673	rs138885312	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs138885312-?		2E-8		1.8	[1.47-2.20]	Illumina [7645193] (imputed)	N
825	chr6	31530809	31530810	rs28732143	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs28732143-A	0.041	1E-64	(MHC class I polypeptide-related sequence B, MICB.5102.55.3)	1.02	[0.9-1.14] unit increase	Affymetrix [10572788] (imputed)	N
825	chr6	31532519	31532520	rs111584145	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	6p21.33		rs111584145-G	0.615516	1E-9		0.01450694	[0.0098-0.0192] unit increase	Affymetrix [93095623] (imputed)	N
825	chr6	31532519	31532520	rs111584145	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6p21.33		rs111584145-G	0.615476	1E-15		0.022145554	[0.017-0.028] unit increase	Affymetrix [93095623] (imputed)	N
825	chr6	31532813	31532814	rs2857709	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	NFKBIL1	rs2857709-A	NR	5E-10		0.0243153	[0.017-0.032] unit decrease	Affymetrix [319769] (imputed)	N
825	chr6	31532813	31532814	rs2857709	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	NFKBIL1	rs2857709-A	NR	1E-9		0.0236953	[0.016-0.031] unit decrease	Affymetrix [319769] (imputed)	N
825	chr6	31533377	31533378	rs2857602	33106546	Johnson TA	2020-10-26	J Hum Genet	Association of an IGHV3-66 gene variant with Kawasaki disease.	Kawasaki disease	1,276 East Asian ancestry cases, 5,086 East Asian ancestry controls	2,152 East Asian ancestry cases, 2,751 East Asian ancestry controls	6p21.33	LTA	rs2857602-A	NR	3E-15		0.78	[0.73-0.83]	Affymetrix, Illumina [6265045] (imputed)	N
825	chr6	31533377	31533378	rs2857602	32805626	Yuan S	2020-08-14	EBioMedicine	Effects of tumour necrosis factor on cardiovascular disease and cancer: A two-sample Mendelian randomization study.	Tumor necrosis factor levels	30,912 European ancestry individuals	NA	6p21.33	LTA	rs2857602-G	0.38	3E-12		0.032	[0.02-0.044] unit increase	NR [NR]	N
825	chr6	31535132	31535133	rs190775951	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs190775951-A	0.017	8E-16	(MHC class I polypeptide-related sequence B, MICB.5102.55.3)	0.86	[0.64-1.08] unit increase	Affymetrix [10572788] (imputed)	N
825	chr6	31538276	31538277	rs3093539	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	6p21.33	ABHD16A, AIF1, APOM, ATP6V1G2, ATP6V1G2-DDX39B, BAG6, C2, C4A, C4B, C4B_2, C6orf25, C6orf47, C6orf48, CFB, CLIC1, CSNK2B, CYP21A1P, CYP21A2, DDAH2, DDX39B, DXO, EHMT2, GPANK1, HSPA1A, HSPA1B, HSPA1L, LOC102060414, LSM2, LST1, LTA, LTB, LY6G5B, LY6G5C, LY6G6C, LY6G6D, LY6G6E, LY6G6F, MCCD1, MICB, MIR1236, MIR4646, MIR6832, MSH5, MSH5-SAPCD1, NCR3, NELFE, NEU1, NFKBIL1, PRRC2A, SAPCD1, SKIV2L, SLC44A4, SNORA38, SNORD48, SNORD52, SNORD84, SNORD117, STK19, TNF, TNXA, TNXB, VARS, VWA7, ZBTB12	rs3093539-G	0.9841	1E-9		1.189845	[1.14-1.24]	Affymetrix [8274727] (imputed)	N
825	chr6	31538495	31538497	rs736160	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	LTA	rs736160-A	NR	1E-13		0.0220518	[0.016-0.028] unit increase	Affymetrix [319769] (imputed)	N
825	chr6	31538495	31538497	rs736160	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	LTA	rs736160-A	NR	1E-12		0.0211835	[0.015-0.027] unit increase	Affymetrix [319769] (imputed)	N
825	chr6	31538495	31538497	rs736160	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	LTA	rs736160-A	NR	7E-14		0.0222905	[0.016-0.028] unit decrease	Affymetrix [321016] (imputed)	N
825	chr6	31538495	31538497	rs736160	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	LTA	rs736160-A	NR	1E-21		0.0310209	[0.025-0.037] unit decrease	Affymetrix [323123] (imputed)	N
825	chr6	31538495	31538497	rs736160	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	LTA	rs736160-A	NR	3E-11		0.0199683	[0.014-0.026] unit increase	Affymetrix [321169] (imputed)	N
825	chr6	31539766	31539767	rs2844482	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	6p21.33	ABHD16A, AIF1, APOM, ATP6V1G2, ATP6V1G2-DDX39B, BAG6, C6orf25, C6orf47, CSNK2B, DDAH2, DDX39B, GPANK1, LST1, LTA, LTB, LY6G5B, LY6G5C, LY6G6C, LY6G6D, LY6G6E, LY6G6F, MCCD1, MICB, MIR4646, MIR6832, NCR3, NFKBIL1, PRRC2A, SNORA38, SNORD84, SNORD117, TNF	rs2844482-T	0.152664	1E-9		1.0639137	[1.04-1.08]	Affymetrix [8274727] (imputed)	N
825	chr6	31539766	31539767	rs2844482	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Perceived unattractiveness to mosquitoes	16,576 European ancestry individuals	NA	6p21.33	intergenic	rs2844482-T	NR	8E-6		0.145906	[0.082-0.21] unit decrease	Illumina [7433384] (imputed)	N
825	chr6	31539767	31539768	rs2071590	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	6p21.33	NR	rs2071590-A	0.363817	4E-9		0.042927716	[0.029-0.057] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
825	chr6	31539767	31539768	rs2071590	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	6p21.33	Intergenic	rs2071590-A	0.378	1E-8		0.0133	[0.0088-0.0178] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
825	chr6	31540140	31540141	rs2239704	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	6p21.33	LTA	rs2239704-A	0.385621	2E-12		0.01774556	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
825	chr6	31540140	31540141	rs2239704	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	6p21.33	NR	rs2239704-A	0.384392	1E-14		0.0163675	[0.012-0.021] unit decrease	NR [NR]	N
825	chr6	31540140	31540141	rs2239704	28806749	Leo PJ	2017-08-14	PLoS Genet	Defining the genetic susceptibility to cervical neoplasia-A genome-wide association study.	Cervical cancer	2,866 European ancestry cases, 6,481 European ancestry controls	NA	6p21.33	TNF	rs2239704-A	NR	6E-9		1.23	[NR]	Illumina [10863230] (imputed)	N
825	chr6	31540555	31540556	rs2229094	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.33		rs2229094-T	0.746	4E-60				Affymetrix [10369434] (imputed)	N
825	chr6	31540555	31540556	rs2229094	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	6p21.33		rs2229094-T	0.746	9E-34				Affymetrix [10369434] (imputed)	N
825	chr6	31540555	31540556	rs2229094	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.33		rs2229094-T	0.746	3E-36				Affymetrix [10369434] (imputed)	N
825	chr6	31540555	31540556	rs2229094	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	6p21.33		rs2229094-T	0.746	2E-47				Affymetrix [10369434] (imputed)	N
825	chr6	31540555	31540556	rs2229094	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs2229094-T	0.746	6E-107				Affymetrix [10369434] (imputed)	N
825	chr6	31540555	31540556	rs2229094	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p21.33		rs2229094-T	0.746	4E-37				Affymetrix [10369434] (imputed)	N
825	chr6	31540555	31540556	rs2229094	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	6p21.33	LTA	rs2229094-C	0.254265	6E-29		0.029798461	[0.025-0.035] unit increase	Affymetrix [93095623] (imputed)	N
825	chr6	31540555	31540556	rs2229094	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.33	LTA	rs2229094-C	0.254251	7E-45		0.040826518	[0.035-0.047] unit increase	Affymetrix [93095623] (imputed)	N
825	chr6	31540555	31540556	rs2229094	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.33	NR	rs2229094-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
825	chr6	31540555	31540556	rs2229094	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	White blood cell count	8,825 African American individuals, 18,251 Hispanic/Latino individuals, 543 Asian ancestry individuals, 606 Native American ancestry individuals, 383 individuals	NA	6p21.33	NR	rs2229094-?	NR	4E-6		0.01256537	[0.0072-0.0179] unit increase	Illumina [30613845] (imputed)	N
825	chr6	31540555	31540556	rs2229094	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	6p21.33	LTA	rs2229094-C	0.2537	8E-43		0.0564668	[0.048-0.065] unit increase	Affymetrix [~ 2500000] (imputed)	N
825	chr6	31540555	31540556	rs2229094	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	6p21.33	LTA	rs2229094-C	0.2536	4E-15		0.03213321	[0.024-0.04] unit increase	Affymetrix [~ 2500000] (imputed)	N
825	chr6	31540555	31540556	rs2229094	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	6p21.33	LTA	rs2229094-C	0.2535	6E-72		0.07418746	[0.066-0.082] unit increase	Affymetrix [~ 2500000] (imputed)	N
825	chr6	31540756	31540757	rs2229092	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	LTA	rs2229092-C	NR	5E-9		0.0338477	[0.022-0.045] unit decrease	Affymetrix [321016] (imputed)	N
825	chr6	31540756	31540757	rs2229092	32641083	Hillary RF	2020-07-08	Genome Med	Multi-method genome- and epigenome-wide studies of inflammatory protein levels in healthy older adults.	Tumor necrosis factor beta levels	982 Scottish ancestry individuals	NA	6p21.33	NR	rs2229092-C	0.05477	5E-31		1.15038	[0.96-1.35] unit decrease	Illumina [7903493] (imputed)	N
825	chr6	31540956	31540957	rs4647195	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.33	NR	rs4647195-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
825	chr6	31542307	31542308	rs1799964	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	89,266 East Asian ancestry individuals	NA	6p21.33	NR	rs1799964-T	0.827369	7E-15		0.048854	[0.037-0.061] SD units decrease	Affymetrix, Illumina [16289068] (imputed)	N
825	chr6	31542307	31542308	rs1799964	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.33	NR	rs1799964-?	NR	1E-11				Affymetrix [~ 8270000] (imputed)	N
825	chr6	31542307	31542308	rs1799964	21102463	Franke A	2010-11-21	Nat Genet	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry trios	6p21.33	HLA-DQA2, LTA, TNF, LST1, LTB	rs1799964-C	0.209	4E-11		1.19	[1.13-1.25]	Affymetrix, Illumina [953241] (imputed)	N
825	chr6	31543030	31543031	rs1800629	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	TNF	rs1800629-A	NR	3E-12		0.0274188	[0.02-0.035] unit decrease	Affymetrix [323858] (imputed)	N
825	chr6	31543030	31543031	rs1800629	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	6p21.33	TNF	rs1800629-A	0.166	8E-19		0.2902	[0.23-0.35] mmHg increase	Affymetrix [NR] (imputed)	N
825	chr6	31543826	31543827	rs1800610	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NCR3	5,364 Icelandic ancestry individuals	NA	6p21.33		rs1800610-A	0.05852	5E-49		0.548141	[0.48-0.62] unit decrease	Illumina [7506463] (imputed)	N
825	chr6	31544188	31544189	rs3093662	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	6p21.33	NR	rs3093662-A	0.92	2E-10		0.0223	[0.015-0.029] unit increase	NR [NR]	N
825	chr6	31544641	31544642	rs3093664	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MICB	5,339 Icelandic ancestry individuals	NA	6p21.33		rs3093664-G	0.08964	1E-117		0.671593	[0.61-0.73] unit increase	Illumina [7506463] (imputed)	N
825	chr6	31544641	31544642	rs3093664	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p21.33	TNF	rs3093664-G	0.048	3E-7		0.13	[0.081-0.179] unit increase	Affymetrix, Illumina [7374092] (imputed)	N
825	chr6	31544641	31544642	rs3093664	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs3093664-A	0.916875	8E-64	(MICB, 9328_55_3)	0.73897094	[0.66-0.82] unit decrease	Illumina [> 1000000] (imputed)	N
825	chr6	31544641	31544642	rs3093664	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs3093664-A	0.916875	8E-11	(C4A C4B, 2182_54_1)	0.29393905	[0.21-0.38] unit increase	Illumina [> 1000000] (imputed)	N
825	chr6	31544641	31544642	rs3093664	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs3093664-A	0.916875	3E-14	(IL36A, 14150_7_3)	0.34182286	[0.25-0.43] unit increase	Illumina [> 1000000] (imputed)	N
825	chr6	31544641	31544642	rs3093664	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs3093664-A	0.916875	1E-111	(MICB, 5102_55_3)	0.9721669	[0.89-1.05] unit decrease	Illumina [> 1000000] (imputed)	N
825	chr6	31544641	31544642	rs3093664	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs3093664-A	0.916875	1E-10	(USP25, 9215_117_3)	0.28181827	[0.2-0.37] unit decrease	Illumina [> 1000000] (imputed)	N
825	chr6	31546849	31546850	rs1800628	27749845	Lesseur C	2016-10-17	Nat Genet	Genome-wide association analyses identify new susceptibility loci for oral cavity and pharyngeal cancer.	Oral cavity cancer	2,717 European ancestry cases, 273 cases, 5,984 European ancestry controls, 601 controls	NA	6p21.33	MICB, AIF1	rs1800628-A	0.07	7E-8		1.3962	NR	Illumina [7574753] (imputed)	N
825	chr6	31547513	31547514	rs769178	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs769178-G	0.94078125	8E-31	(NCR3, 3003_29_2)	0.5867702	[0.49-0.69] unit increase	Illumina [> 1000000] (imputed)	N
825	chr6	31547513	31547514	rs769178	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs769178-G	0.94078125	4E-26	(ISG15, 14148_2_3)	0.54343	[0.44-0.64] unit increase	Illumina [> 1000000] (imputed)	N
825	chr6	31547513	31547514	rs769178	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs769178-G	0.94078125	3E-10	(TNXB, 5698_60_3)	0.32249722	[0.22-0.42] unit increase	Illumina [> 1000000] (imputed)	N
825	chr6	31547513	31547514	rs769178	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs769178-G	0.94078125	1E-40	(MICA, 2730_58_2)	0.67921454	[0.58-0.78] unit increase	Illumina [> 1000000] (imputed)	N
825	chr6	31547513	31547514	rs769178	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs769178-G	0.94078125	1E-33	(C2, 3186_2_2)	0.63008285	[0.53-0.73] unit increase	Illumina [> 1000000] (imputed)	N
825	chr6	31547610	31547611	rs769177	30226566	Yamada Y	2018-09-04	Int J Mol Med	Identification of 13 novel susceptibility loci for early-onset myocardial infarction, hypertension, or chronic kidney disease.	Hypertension	3,444 Japanese ancestry cases, 4,636 Japanese ancestry controls	NA	6p21.33	Intergenic	rs769177-G	0.8280000000000001	1E-6		1.2345679		Illumina [31276]	N
825	chr6	31552849	31552850	rs7758790	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.33		rs7758790-T	0.774	1E-27				Affymetrix [10369434] (imputed)	N
825	chr6	31555129	31555130	rs2256965	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6p21.33		rs2256965-A	0.4188	2E-13		0.0106	[0.0079-0.0133] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
825	chr6	31555391	31555392	rs2256974	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.33	NR	rs2256974-A	0.375	2E-25		0.842	[0.81-0.88]	Illumina [11270530] (imputed)	N
825	chr6	31555391	31555392	rs2256974	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Tumor necrosis factor receptor 2 levels	21,758 European ancestry individuals	9,173 individuals	6p21.33		rs2256974-A	0.18	3E-10		0.0632	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
825	chr6	31555391	31555392	rs2256974	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p21.33	LST1	rs2256974-A	0.173581	3E-16		0.026160087	[0.02-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
825	chr6	31555391	31555392	rs2256974	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	6p21.33	LST1	rs2256974-A	0.17355	5E-37		0.039224777	[0.033-0.045] unit increase	Affymetrix [93095623] (imputed)	N
825	chr6	31555479	31555480	rs200801362	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	6p21.33	LST1	rs200801362-T	0.839907	4E-13		0.0188461	[0.014-0.024] unit decrease	Affymetrix [12370749]	N
825	chr6	31556156	31556156	rs28986170	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FEV1/FVC)	48,943 European ancestry individuals	57,176 European ancestry individuals, 38,199 individuals.	6p21.33	LST1	rs28986170-?	0.752	2E-10	(conditioned on rs2070600, rs9272528)	0.063	[0.043-0.083] unit increase	Affymetrix [27624732] (imputed)	N
825	chr6	31556580	31556581	rs1052248	33768542	Liu Y	2021-03-26	Clin Pharmacol Ther	Class II HLA Variants Associate with Risk of Pegaspargase Hypersensitivity.	Asparaginase hypersensitivity in acute lymphoblastic leukemia	798 Native American individuals	NA	6p21.33	NR	rs1052248-A	NR	4E-7		2.31	[NR]	Illumina [NR] (imputed)	N
825	chr6	31556580	31556581	rs1052248	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	6p21.33	Intergenic	rs1052248-A	0.2609	2E-8	(MTAG)	0.0146	[0.0095-0.0197] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
825	chr6	31556580	31556581	rs1052248	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p21.33	LST1	rs1052248-A	0.28	3E-17		1.05	[1.04-1.06]	Illumina [at least 560000] (imputed)	N
825	chr6	31556708	31556709	rs986475	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NCR3	rs986475-G	0.071	1E-31	(Natural cytotoxicity triggering receptor 3, NCR3.3003.29.2)	0.55	[0.45-0.65] unit decrease	Affymetrix [10572788] (imputed)	N
825	chr6	31557490	31557491	rs11575841	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	6p21.33	NR	rs11575841-?	NR	5E-20		9.163	NR z score decrease	Illumina [at least 830937] (imputed)	N
825	chr6	31557790	31557791	rs11575839	23028341	Yang X	2012-09-13	PLoS Genet	Genome-wide association study for serum complement C3 and C4 levels in healthy Chinese subjects.	Complement C3 and C4 levels	1,999 Han Chinese ancestry male individuals	1,496 Han Chinese ancestry male individuals	6p21.33	HLA-C	rs11575839-A	0.05	1E-54	(Serum level of C4)	0.23	[0.21-0.25] g/L decrease	Illumina [1940245] (imputed)	N
825	chr6	31558174	31558175	rs148533164	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.33		rs148533164-G	0.952	3E-15				Affymetrix [10369434] (imputed)	N
825	chr6	31558263	31558264	rs28732145	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p21.33	NR	rs28732145-?	NR	2E-11		0.2045	[0.15-0.26] unit increase	Illumina [at least 560000] (imputed)	N
825	chr6	31560669	31560670	rs11575837	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6p21.33		rs11575837-?	NR	5E-8		1.20533	[1.14-1.27]	NR [685523]	N
825	chr6	31560669	31560670	rs11575837	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.33	NR	rs11575837-T	0.012	8E-13		0.58141	[0.42-0.74] unit increase	Affymetrix [up to 8900000] (imputed)	N
825	chr6	31561103	31561103	rs573608874	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	NCR3	rs573608874-T	NR	2E-8		0.0184452	[0.012-0.025] unit increase	Affymetrix [323123] (imputed)	N
825	chr6	31561352	31561353	rs28732146	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	NCR3	rs28732146-A	NR	1E-11		0.0239586	[0.017-0.031] unit decrease	Affymetrix [321016] (imputed)	N
825	chr6	31561352	31561353	rs28732146	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	NCR3	rs28732146-A	NR	2E-17		0.0326707	[0.025-0.04] unit decrease	Affymetrix [323123] (imputed)	N
825	chr6	31561514	31561515	rs9357135	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	6p21.33		rs9357135-T	0.046397421	1E-19		0.60996497	[0.48-0.74] unit increase	Illumina [13429980] (imputed)	N
825	chr6	31562149	31562150	rs2857599	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	NCR3	rs2857599-A	NR	1E-19		0.0348769	[0.027-0.042] unit decrease	Affymetrix [321016] (imputed)	N
825	chr6	31562149	31562150	rs2857599	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	6p21.33	Intergenic	rs2857599-G	NR	3E-8		0.0262207	[0.017-0.036] unit increase	Illumina [13519193] (imputed)	N
825	chr6	31562164	31562165	rs536378929	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	6p21.33	NCR3	rs536378929-T	0.9236	9E-26		0.0494	[0.04-0.059] unit decrease	Affymetrix [18391927] (imputed)	N
825	chr6	31562614	31562615	rs2515920	30226566	Yamada Y	2018-09-04	Int J Mol Med	Identification of 13 novel susceptibility loci for early-onset myocardial infarction, hypertension, or chronic kidney disease.	Hypertension	3,444 Japanese ancestry cases, 4,636 Japanese ancestry controls	NA	6p21.33	NCR3	rs2515920-T	0.827	5E-7		1.2345679		Illumina [31276]	N
825	chr6	31562763	31562764	rs3130632	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	NCR3	rs3130632-T	NR	1E-10		0.022096	[0.015-0.029] unit decrease	Affymetrix [319769] (imputed)	N
825	chr6	31562763	31562764	rs3130632	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	NCR3	rs3130632-T	NR	9E-10		0.0210507	[0.014-0.028] unit decrease	Affymetrix [319769] (imputed)	N
825	chr6	31562763	31562764	rs3130632	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	NCR3	rs3130632-T	NR	7E-11		0.0226077	[0.016-0.029] unit decrease	Affymetrix [321169] (imputed)	N
825	chr6	31562766	31562767	rs34744948	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.33	NR	rs34744948-?	NR	4E-11				Affymetrix [~ 8270000] (imputed)	N
825	chr6	31563227	31563228	rs2857598	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	NCR3	rs2857598-A	NR	4E-15		0.0338966	[0.025-0.042] unit increase	Affymetrix [323123] (imputed)	N
825	chr6	31563227	31563228	rs2857598	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.33	Intergenic	rs2857598-C	NR	7E-8	(women)	0.0362414	[0.023-0.049] unit decrease	Illumina [13520550] (imputed)	N
825	chr6	31563227	31563228	rs2857598	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.33	Intergenic	rs2857598-C	NR	5E-11		0.0308295	[0.022-0.04] unit decrease	Illumina [13520550] (imputed)	N
825	chr6	31563227	31563228	rs2857598	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	6p21.33	Intergenic	rs2857598-C	NR	9E-20		0.0496215	[0.039-0.06] unit decrease	Illumina [13520550] (imputed)	N
825	chr6	31563239	31563240	rs3132452	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	6p21.33	NR	rs3132452-?	NR	2E-7		0.095	[0.059-0.131] unit increase	Illumina [at least 560000] (imputed)	N
825	chr6	31564166	31564167	rs2515919	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	NCR3	rs2515919-G	NR	5E-12		0.020055	[0.014-0.026] unit increase	Affymetrix [319769] (imputed)	N
825	chr6	31564166	31564167	rs2515919	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	NCR3	rs2515919-G	NR	2E-8		0.0182636	[0.012-0.025] unit increase	Affymetrix [323858] (imputed)	N
825	chr6	31564166	31564167	rs2515919	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	NCR3	rs2515919-G	NR	7E-11		0.0189369	[0.013-0.025] unit increase	Affymetrix [319769] (imputed)	N
825	chr6	31564166	31564167	rs2515919	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	NCR3	rs2515919-G	NR	2E-10		0.0184288	[0.013-0.024] unit decrease	Affymetrix [321016] (imputed)	N
825	chr6	31564166	31564167	rs2515919	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	NCR3	rs2515919-G	NR	1E-28		0.0351117	[0.029-0.041] unit decrease	Affymetrix [323123] (imputed)	N
825	chr6	31564166	31564167	rs2515919	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	NCR3	rs2515919-G	NR	8E-13		0.0210432	[0.015-0.027] unit increase	Affymetrix [321169] (imputed)	N
825	chr6	31564166	31564167	rs2515919	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	6p21.33	Intergenic	rs2515919-A	0.6258	1E-10	(MTAG)	0.0119	[0.0082-0.0156] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
825	chr6	31564166	31564167	rs2515919	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	6p21.33	Intergenic	rs2515919-A	0.6255	3E-16	(MTAG)	0.0139	[0.011-0.017] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
825	chr6	31564166	31564167	rs2515919	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6p21.33	Intergenic	rs2515919-A	0.63	3E-16	(MTAG)	0.0111	[0.0084-0.0138] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
825	chr6	31564820	31564821	rs2844480	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p21.33	NR	rs2844480-?	NR	2E-18		0.0887	[0.069-0.108] unit increase	Illumina [at least 560000] (imputed)	N
825	chr6	31565309	31565310	rs150379130	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	NCR3	rs150379130-T	NR	4E-9		0.0270941	[0.018-0.036] unit decrease	Affymetrix [323123] (imputed)	N
825	chr6	31565536	31565537	rs111728624	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	NCR3	rs111728624-C	NR	3E-11		0.0281508	[0.02-0.036] unit increase	Affymetrix [319769] (imputed)	N
825	chr6	31565536	31565537	rs111728624	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.33	NCR3	rs111728624-C	NR	2E-8		0.0241088	[0.016-0.032] unit increase	Affymetrix [321114] (imputed)	N
825	chr6	31565536	31565537	rs111728624	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	NCR3	rs111728624-C	NR	1E-11		0.0289838	[0.021-0.037] unit increase	Affymetrix [321169] (imputed)	N
825	chr6	31566167	31566168	rs3130631	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p21.33	NR	rs3130631-?	NR	2E-9		0.0861	[0.058-0.115] unit decrease	Illumina [at least 560000] (imputed)	N
825	chr6	31566839	31566840	rs17200816	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	NCR3	rs17200816-T	NR	2E-11		0.0283425	[0.02-0.037] unit increase	Affymetrix [319769] (imputed)	N
825	chr6	31567421	31567422	rs2857596	32752121	Nedoszytko B	2020-07-31	Int J Mol Sci	Results from a Genome-Wide Association Study (GWAS) in Mastocytosis Reveal New Gene Polymorphisms Associated with WHO Subgroups.	Systemic mastocytosis	93 European ancestry cases, 5,606 European ancestry controls	NA	6p21.33	NRC3	rs2857596-C	0.2394	2E-10		2.582	[2.28-2.88]	Illumina [281811]	N
825	chr6	31568468	31568469	rs2857595	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	NCR3	rs2857595-A	NR	3E-11		0.0254138	[0.018-0.033] unit decrease	Affymetrix [127266] (imputed)	N
825	chr6	31568468	31568469	rs2857595	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FEV1/FVC)	48,943 European ancestry individuals	57,176 European ancestry individuals, 38,199 individuals.	6p21.33	NCR3	rs2857595-A	0.213	4E-9		0.048	[0.032-0.064] unit decrease	Affymetrix [27624732] (imputed)	N
825	chr6	31568468	31568469	rs2857595	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FEV1)	48,943 European ancestry individuals.	57,176 European ancestry individuals, 38,199 individuals.	6p21.33	NCR3	rs2857595-A	0.21	2E-6		0.039	[0.023-0.055] unit decrease	Affymetrix [up to 27624732] (imputed)	N
825	chr6	31568468	31568469	rs2857595	25936594	Tomer Y	2015-04-27	J Autoimmun	Genome wide identification of new genes and pathways in patients with both autoimmune thyroiditis and type 1 diabetes.	Type 1 diabetes and autoimmune thyroid diseases	346 European ancestry cases, 727 European ancestry controls	185 European ancestry cases, 340 European ancestry controls	6p21.33	NFKBIL1, LTA, NCR3	rs2857595-T	NR	2E-23		2.3765		Illumina [514008]	N
825	chr6	31568468	31568469	rs2857595	25194280	Wei Q	2014-09-07	Nat Genet	Genome-wide association study identifies three susceptibility loci for laryngeal squamous cell carcinoma in the Chinese population.	Laryngeal squamous cell carcinoma	993 Chinese ancestry cases, 1,995 Chinese ancestry controls	2,398 Chinese ancestry cases, 2,804 Chinese ancestry controls	6p21.33	AIF1, HLA	rs2857595-?	0.50	2E-15		1.3	[1.22-1.39]	Affymetrix [662108]	N
825	chr6	31568468	31568469	rs2857595	23284291	Hancock DB	2012-12-20	PLoS Genet	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (smoking interaction)	50,047 European ancestry individuals	NA	6p21.33	NCR3	rs2857595-?	NR	8E-8	(FEV1/FVC, Ever-smoking)			NR [~ 2500000] (imputed)	N
825	chr6	31568468	31568469	rs2857595	21946350	Soler Artigas M	2011-09-25	Nat Genet	Genome-wide association and large-scale follow up identifies 16 new loci influencing lung function.	Pulmonary function	48,201 European ancestry individuals	46,411 European ancestry individuals	6p21.33	NCR3	rs2857595-G	0.81	2E-10	(FEV1/FVC)	0.037	[0.025-0.049] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
825	chr6	31568468	31568469	rs2857595	21946350	Soler Artigas M	2011-09-25	Nat Genet	Genome-wide association and large-scale follow up identifies 16 new loci influencing lung function.	Pulmonary function	48,201 European ancestry individuals	46,411 European ancestry individuals	6p21.33	NCR3	rs2857595-G	0.81	1E-6	(FEV1)	0.025	[0.02-0.04] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
825	chr6	31569519	31569520	rs17207190	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Strep throat	52,487 European ancestry cases, 22,017 European ancestry controls	NA	6p21.33	NR	rs17207190-?	NR	8E-8		0.0766	[0.049-0.105] unit decrease	Illumina [at least 560000] (imputed)	N
825	chr6	31569703	31569704	rs2507960	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Diastolic blood pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	6p21.33	HLA	rs2507960-A	0.139916952	3E-6		0.1878	[0.11-0.27] unit increase	Affymetrix [~ 9800000] (imputed)	N
825	chr6	31569900	31569901	rs9267516	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	6p21.33		rs9267516-T	0.364098	1E-16		0.0286201	[0.024-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
825	chr6	31572332	31572333	rs2736186	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	Intergenic	rs2736186-A	0.03768844	1E-29	(EA, Neutrophil collagenase)	1.233	[1.03-1.44] unit increase	Affymetrix [509946]	N
825	chr6	31572643	31572644	rs2857594	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	Triglyceride levels	291,107 British ancestry individuals	NA	6p21.33	TBC1D22B	rs2857594-C	0.148615	4E-11		0.01965	[0.014-0.025] unit decrease	Affymetrix [9463307] (imputed)	N
825	chr6	31572643	31572644	rs2857594	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	Systolic blood pressure	291,107 British ancestry individuals	NA	6p21.33	TBC1D22B	rs2857594-C	0.148615	1E-7		0.36076	[0.23-0.49] unit decrease	Affymetrix [9463307] (imputed)	N
825	chr6	31572663	31572664	rs41291790	35232999	Garcia-Etxebarria K	2022-03-01	Sci Rep	Local genetic variation of inflammatory bowel disease in Basque population and its effect in risk prediction.	Ulcerative colitis	208 European ancestry cases, 935 European ancestry controls	NA	6p21.33		rs41291790-A	0.022	3E-8		5.3		Illumina [5409651] (imputed)	N
825	chr6	31572663	31572664	rs41291790	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	334,944 European ancestry, NR ancestry individuals	NA	6p21.33		rs41291790-?	NR	5E-8				Affymetrix [NR] (imputed)	N
825	chr6	31572955	31572956	rs2844479	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	UQCRHP1	rs2844479-C	NR	4E-14		0.0227975	[0.017-0.029] unit increase	Affymetrix [319769] (imputed)	N
825	chr6	31572955	31572956	rs2844479	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	UQCRHP1	rs2844479-C	NR	6E-13		0.02173	[0.016-0.028] unit increase	Affymetrix [319769] (imputed)	N
825	chr6	31572955	31572956	rs2844479	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	UQCRHP1	rs2844479-C	NR	8E-11		0.0195735	[0.014-0.025] unit decrease	Affymetrix [321016] (imputed)	N
825	chr6	31572955	31572956	rs2844479	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	UQCRHP1	rs2844479-C	NR	1E-14		0.0236304	[0.018-0.03] unit increase	Affymetrix [321169] (imputed)	N
825	chr6	31572955	31572956	rs2844479	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	6p21.33		rs2844479-C	0.326375	4E-26		0.027727867	[0.023-0.033] unit increase	Affymetrix [93095623] (imputed)	N
825	chr6	31572955	31572956	rs2844479	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	6p21.33	AIF1	rs2844479-A	0.66	3E-10		1.14	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
825	chr6	31572955	31572956	rs2844479	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs2844479-C	0.393698650943396	4E-6	(IGP60)	0.151	[0.087-0.215] unit increase	Illumina [~ 2500000] (imputed)	N
825	chr6	31572955	31572956	rs2844479	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs2844479-C	0.393631380483438	4E-6	(IGP6)	0.1506	[0.086-0.215] unit decrease	Illumina [~ 2500000] (imputed)	N
825	chr6	31572955	31572956	rs2844479	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs2844479-C	0.393516127507802	9E-6	(IGP61)	0.1445	[0.081-0.208] unit increase	Illumina [~ 2500000] (imputed)	N
825	chr6	31572955	31572956	rs2844479	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs2844479-C	0.393054780607685	7E-6	(IGP58)	0.1476	[0.083-0.212] unit increase	Illumina [~ 2500000] (imputed)	N
825	chr6	31572955	31572956	rs2844479	19079260	Thorleifsson G	2008-12-14	Nat Genet	Genome-wide association yields new sequence variants at seven loci that associate with measures of obesity.	Weight	72,598 European ancestry individuals, 1,160 African American individuals	Up to 11,036 European ancestry individuals, 32,615 individuals	6p21.33	AIF1, NCR3	rs2844479-T	0.68	2E-8		3.58	[2.33-4.83] percentage SD increase	Illumina [305846]	N
825	chr6	31573109	31573110	rs9267517	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	IgD on unswitched memory B cell	3,636 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs9267517-A	0.2447	1E-13		0.2671	[0.2-0.34] unit decrease	Illumina [18230756] (imputed)	N
825	chr6	31573576	31573577	rs144360625	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	6p21.33		rs144360625-C	0.125812	9E-19		0.029980848	[0.023-0.037] unit increase	Affymetrix [93095623] (imputed)	N
825	chr6	31573576	31573577	rs144360625	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	6p21.33	NR	rs144360625-?	NR	3E-11	(MIC-A)	0.57967	[0.41-0.75] unit decrease	Illumina [11901634] (imputed)	N
825	chr6	31574156	31574156	rs144831544	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	UQCRHP1	rs144831544-AAATTAGC	NR	7E-14		0.026213	[0.019-0.033] unit increase	Affymetrix [319769] (imputed)	N
825	chr6	31574156	31574156	rs144831544	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	UQCRHP1	rs144831544-AAATTAGC	NR	4E-13		0.0254281	[0.019-0.032] unit increase	Affymetrix [319769] (imputed)	N
825	chr6	31574156	31574156	rs144831544	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	UQCRHP1	rs144831544-AAATTAGC	NR	9E-16		0.0284632	[0.022-0.035] unit increase	Affymetrix [321169] (imputed)	N
825	chr6	31574524	31574525	rs28895016	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	6p21.33	NCR3, AIF1	rs28895016-C	0.91	9E-16		1.097	[1.07-1.12]	Affymetrix, Illumina [8307659] (imputed)	N
825	chr6	31574899	31574900	rs28366149	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	UQCRHP1	rs28366149-A	NR	4E-9		0.0225023	[0.015-0.03] unit decrease	Affymetrix [323123] (imputed)	N
825	chr6	31575072	31575073	rs28474889	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	6p21.33	UQCRHP1	rs28474889-T	0.200504	2E-19		0.025810601	[0.02-0.031] unit increase	Affymetrix [93095623] (imputed)	N
825	chr6	31575072	31575073	rs28474889	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6p21.33	UQCRHP1	rs28474889-T	0.200511	2E-24		0.02926071	[0.024-0.035] unit increase	Affymetrix [93095623] (imputed)	N
825	chr6	31575072	31575073	rs28474889	29773799	Horikoshi M	2018-05-17	Nat Commun	Elucidating the genetic architecture of reproductive ageing in the Japanese population.	Menopause (age at onset)	43,861 Japanese ancestry women	32,545 European ancestry women	6p21.33	MSH5 / HLA	rs28474889-C	0.73	5E-16	(japanese)	0.24	[0.18-0.3] year increase	Illumina [at least 532488] (imputed)	N
825	chr6	31575275	31575276	rs9348876	22936669	Julia A	2012-08-30	Gut	A genome-wide association study on a southern European population identifies a new Crohn's disease susceptibility locus at RBX1-EP300.	Crohn's disease	1,277 European ancestry cases, 1,488 European ancestry controls	1,365 European ancestry cases, 1,396 European ancestry controls	6p21.33	AIF1	rs9348876-T	0.06	3E-6		1.41	[1.22-1.63]	Illumina [508934]	N
825	chr6	31575624	31575625	rs28732148	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	6p21.33	AIF1	rs28732148-C	0.932302	2E-9		0.0218984	[0.015-0.029] unit decrease	NR [13737936] (imputed)	N
825	chr6	31577098	31577099	rs3130060	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	UQCRHP1	rs3130060-T	NR	8E-10		0.0239184	[0.016-0.032] unit decrease	Affymetrix [323858] (imputed)	N
825	chr6	31577098	31577099	rs3130060	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	UQCRHP1	rs3130060-T	NR	2E-8		0.0217476	[0.014-0.029] unit decrease	Affymetrix [127266] (imputed)	N
825	chr6	31577098	31577099	rs3130060	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	UQCRHP1	rs3130060-T	NR	6E-9		0.0221795	[0.015-0.03] unit increase	Affymetrix [323123] (imputed)	N
825	chr6	31577282	31577283	rs2857702	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	UQCRHP1	rs2857702-C	NR	7E-9		0.0219268	[0.015-0.029] unit decrease	Affymetrix [323123] (imputed)	N
825	chr6	31580506	31580507	rs3993747	31263887	Adams MJ	2019-07-01	Int J Epidemiol	Factors associated with sharing e-mail information and mental health survey participation in large population cohorts.	Mental health study participation (completed survey)	122,647 British ancestry cases, 248,781 British ancestry controls	NA	6p21.33	NR	rs3993747-A	0.65	1E-9		1.0319917	[1.02-1.04]	NR [16367095] (imputed)	N
825	chr6	31580538	31580539	rs2471960	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Non-Hodgkin's lymphoma	2,400 European ancestry cases, 410,350 European ancestry controls	NA	6p21.33		rs2471960-A	NR	1E-11		1.2300123	NR	Affymetrix [7846216] (imputed)	N
825	chr6	31581036	31581037	rs542914466	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.33	NR	rs542914466-A	0.009	2E-37	(conditional)	18.321	[17.88-18.77]	Illumina [11270530] (imputed)	N
825	chr6	31582024	31582025	rs3132451	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	AIF1	rs3132451-C	NR	3E-14		0.0290333	[0.022-0.037] unit decrease	Affymetrix [323858] (imputed)	N
825	chr6	31582024	31582025	rs3132451	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	AIF1	rs3132451-C	NR	1E-12		0.0272438	[0.02-0.035] unit decrease	Affymetrix [127266] (imputed)	N
825	chr6	31582024	31582025	rs3132451	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	AIF1	rs3132451-C	NR	3E-15		0.029579	[0.022-0.037] unit increase	Affymetrix [323123] (imputed)	N
825	chr6	31582024	31582025	rs3132451	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	AIF1	rs3132451-C	0.217	7E-56	(cAMP-specific 3',5'-cyclic phosphodiesterase 4D, PDE4D.5255.22.3)	0.46	[0.4-0.52] unit decrease	Affymetrix [10572788] (imputed)	N
825	chr6	31582024	31582025	rs3132451	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	AIF1	rs3132451-C	0.217	4E-34	(T-cell surface protein tactile, CD96.9735.44.3)	0.36	[0.3-0.42] unit decrease	Affymetrix [10572788] (imputed)	N
825	chr6	31582024	31582025	rs3132451	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	AIF1	rs3132451-C	0.217	2E-55	(Glutamate receptor 4, GRIA4.10760.107.3)	0.46	[0.4-0.52] unit decrease	Affymetrix [10572788] (imputed)	N
825	chr6	31582024	31582025	rs3132451	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	6p21.33	NCR3, AIF1	rs3132451-G	NR	3E-12		0.171592	[0.12-0.22] unit decrease	Illumina [at least 950000] (imputed)	N
825	chr6	31583154	31583155	rs2844475	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	AIF1	rs2844475-A	NR	2E-8		0.0183217	[0.012-0.025] unit increase	Affymetrix [323858] (imputed)	N
825	chr6	31583154	31583155	rs2844475	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	AIF1	rs2844475-A	NR	5E-13		0.0229918	[0.017-0.029] unit decrease	Affymetrix [323123] (imputed)	N
825	chr6	31583311	31583312	rs2736182	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	6p21.33	AIF1	rs2736182-A	0.019095	6E-9		0.0493347	[0.033-0.066] unit increase	Affymetrix [93095623] (imputed)	N
825	chr6	31583311	31583312	rs2736182	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	6p21.33	AIF1	rs2736182-A	0.019095	2E-13		0.06039303	[0.044-0.077] unit decrease	Affymetrix [93095623] (imputed)	N
825	chr6	31583840	31583841	rs34451818	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.33		rs34451818-G	NR	1E-9		1.2642225	[1.17-1.36]	Affymetrix [7846216] (imputed)	N
825	chr6	31585743	31585744	rs144309021	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	6p21.33	PRRC2A	rs144309021-T	0.1234	1E-9	(S1P d16:1)	0.1184	[0.08-0.156] unit decrease	Illumina [~ 47000000] (imputed)	N
825	chr6	31586460	31586461	rs2857695	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	AIF1	rs2857695-C	NR	2E-15		0.0312768	[0.024-0.039] unit increase	Affymetrix [323123] (imputed)	N
825	chr6	31587041	31587042	rs140054334	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.33	NR	rs140054334-T	0.017	7E-11		0.45969	[0.32-0.6] unit increase	Affymetrix [up to 8900000] (imputed)	N
825	chr6	31587041	31587042	rs140054334	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.33	NR	rs140054334-T	0.017	3E-6	(men)	0.387194	[0.23-0.55] unit increase	Affymetrix [up to 8900000] (imputed)	N
825	chr6	31587560	31587561	rs2736176	32109421	Li C	2020-02-20	Am J Hum Genet	Genome-Wide Association Analysis in Humans Links Nucleotide Metabolism to Leukocyte Telomere Length.	Leukocyte telomere length	78,592 European ancestry individuals	NA	6p21.33	PRRC2A	rs2736176-C	0.31	4E-10		0.035	[0.023-0.047] unit increase	Affymetrix, Illumina, Perlegen [up to 30071938] (imputed)	N
825	chr6	31587869	31587870	rs2857694	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PRRC2A	rs2857694-T	NR	2E-9		0.0174435	[0.012-0.023] unit increase	Affymetrix [319769] (imputed)	N
825	chr6	31587869	31587870	rs2857694	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	PRRC2A	rs2857694-T	NR	4E-8		0.0161057	[0.01-0.022] unit increase	Affymetrix [319769] (imputed)	N
825	chr6	31588020	31588024	rs145554793	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	6p21.33	PRRC2A, SNORA38	rs145554793-C	0.364548	5E-15		0.020902038	[0.016-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
826	chr6	31588383	31588384	rs2857693	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	PRRC2A	rs2857693-T	NR	2E-11		0.019953	[0.014-0.026] unit increase	Affymetrix [321169] (imputed)	N
826	chr6	31588383	31588384	rs2857693	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	6p21.33	BAT2	rs2857693-T	0.38	3E-29		0.034	[0.028-0.04] unit decrease	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
826	chr6	31589263	31589264	rs3115665	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic glomerulonephritis	566 European ancestry cases, 475,255 European ancestry controls, 210 East Asian ancestry cases, 174,345 East Asian ancestry controls	NA	6p21.33		rs3115665-G	NR	3E-8		0.929	[0.6-1.26] unit increase	Affymetrix, Illumina [25844108] (imputed)	N
826	chr6	31589675	31589676	rs2844472	33563987	Tyrrell J	2021-02-09	Nat Commun	Genetic predictors of participation in optional components of UK Biobank.	Acceptance of an invitation to participate in a mental health questionnaire	146,074 European ancestry cases, 148,713 European ancestry controls	NA	6p21.33	NR	rs2844472-A	0.65	2E-9		1.03	[1.02, 1.04]	Affymetrix [39302896] (imputed)	N
826	chr6	31589734	31589735	rs2736173	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p21.33	BAT2	rs2736173-A	0.03	2E-7	(EA)	3.58	[2.14-5.98]	Illumina [up to 547389]	N
826	chr6	31590897	31590898	rs2736172	24132900	Kanazawa T	2013-10-01	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of atypical psychosis.	Psychosis (atypical)	47 Japanese ancestry cases, 882 Japanese ancestry controls	NA	6p21.33	TNF, MICB	rs2736172-?		4E-6				Affymetrix [545513]	N
826	chr6	31591917	31591918	rs2260051	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		6p21.33	PRRC2A	rs2260051-A	0.438452	2E-17		0.011743	[0.009-0.0144] unit decrease	Affymetrix [12370749]	N
826	chr6	31591917	31591918	rs2260051	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	Waist circumference	291,107 British ancestry individuals	NA	6p21.33	PRRC2A	rs2260051-A	0.44273999	2E-13		0.230643	[0.17-0.29] unit decrease	Affymetrix [9463307] (imputed)	N
826	chr6	31591917	31591918	rs2260051	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	6p21.33	NR	rs2260051-A	0.4422	8E-15		0.019329904	[0.014-0.024] unit decrease	Affymetrix [10549349] (imputed)	N
826	chr6	31591917	31591918	rs2260051	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	6p21.33	PRRC2A	rs2260051-A	0.4425	1E-15		0.002	[0.0014-0.0026] unit increase	Affymetrix [15275733] (imputed)	N
826	chr6	31591917	31591918	rs2260051	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	223,215 British ancestry individuals	111,610 British ancestry individuals	6p21.33	PRRC2A	rs2260051-T	0.56	7E-12		0.002	[0.0014-0.0026] unit decrease	Affymetrix [15275733] (imputed)	N
826	chr6	31592819	31592820	rs3135044	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	6p21.33	NR	rs3135044-?		9E-11		0.0145909	[0.01-0.019] unit decrease	Affymetrix [19400418] (imputed)	N
826	chr6	31595486	31595487	rs2736171	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PRRC2A	rs2736171-G	NR	3E-9		0.0173452	[0.012-0.023] unit decrease	Affymetrix [321016] (imputed)	N
826	chr6	31595881	31595882	rs1046080	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Sex hormone-binding globulin levels	389,354 European ancestry individuals	NA	6p21.33		rs1046080-A	0.72	4E-8		0.013	nmol/L decrease	NR [NR] (imputed)	N
826	chr6	31595881	31595882	rs1046080	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	6p21.33		rs1046080-A	0.72	2E-18				NR [NR] (imputed)	N
826	chr6	31595881	31595882	rs1046080	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	6p21.33		rs1046080-A	0.72	4E-22		0.016	% increase	NR [NR] (imputed)	N
826	chr6	31595881	31595882	rs1046080	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Aspartate aminotransferase levels	424,778 European ancestry individuals	NA	6p21.33		rs1046080-A	0.72	2E-7		0.011	U/L decrease	NR [NR] (imputed)	N
826	chr6	31595881	31595882	rs1046080	32534018	Liu X	2020-06-10	Brain Behav Immun	Genetic factors underlying the bidirectional relationship between autoimmune and mental disorders - findings from a Danish population-based study.	Autoimmune traits	1,383 Danish ancestry cases, 62,656 Danish ancestry controls	NA	6p21.33	NR	rs1046080-C	0.26	2E-12		0.72	[0.65-0.79]	NR [7721839] (imputed)	N
826	chr6	31595881	31595882	rs1046080	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	6p21.33	NR	rs1046080-?	NR	5E-8		0.12785	[0.082-0.174] unit increase	Affymetrix [7794483] (imputed)	N
826	chr6	31595881	31595882	rs1046080	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	6p21.33	NR	rs1046080-?	NR	3E-6	(male)	0.13448	[0.078-0.191] unit increase	Affymetrix [7794483] (imputed)	N
826	chr6	31595881	31595882	rs1046080	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite ratios	Up to 5,591 European ancestry individuals	Up to 1,767 European ancestry individuals	6p21.33	PRRC2A	rs1046080-A	0.74	1E-14	(X-11444/X-11470)	0.027	[0.019-0.035] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
826	chr6	31596137	31596138	rs3132450	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PRRC2A	rs3132450-G	NR	7E-11		0.0268129	[0.019-0.035] unit decrease	Affymetrix [319769] (imputed)	N
826	chr6	31596137	31596138	rs3132450	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	PRRC2A	rs3132450-G	NR	8E-12		0.0285009	[0.02-0.037] unit decrease	Affymetrix [321169] (imputed)	N
826	chr6	31597699	31597700	rs3130623	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	6p21.33		rs3130623-T	NR	8E-24		0.0277	[0.022-0.033] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
826	chr6	31597707	31597708	rs2736163	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein APOM	5,364 Icelandic ancestry individuals	NA	6p21.33		rs2736163-T	0.03403	2E-15		0.413547	[0.31-0.52] unit decrease	Illumina [7506463] (imputed)	N
826	chr6	31597752	31597753	rs2242660	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cervical cancer	6,563 European ancestry cases, 410,350 European ancestry controls	NA	6p21.33		rs2242660-G	NR	2E-7		1.1015	NR	Affymetrix [7846216] (imputed)	N
826	chr6	31601842	31601843	rs3115663	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.33	BAT2	rs3115663-G	0.1812	7E-57		3.04	[NR]	Illumina [242824]	N
826	chr6	31602966	31602967	rs1046089	23894747	Aberg KA	2013-02-01	JAMA Psychiatry	A comprehensive family-based replication study of schizophrenia genes.	Schizophrenia	11,185 European ancestry cases, 10,768 European ancestry controls	1,262 African American ancestry individuals, 2,740 European ancestry individuals, 2,296 Asian ancestry individuals	6p21.33	PRRC2A, BAG6	rs1046089-G	0.34	4E-6	(EA)	1.3	[NR]	NR [1085772] (imputed)	N
826	chr6	31602966	31602967	rs1046089	23307926	Perry JR	2013-01-09	Hum Mol Genet	A genome-wide association study of early menopause and the combined impact of identified variants.	Menopause (age at onset)	3,493 European ancestry cases, 13,598 European ancestry controls	3,412 European ancestry cases, 4,928 European ancestry controls	6p21.33	NR	rs1046089-A	0.3492	4E-11		0.1919	[0.13-0.25] years increase	NR [NR]	N
826	chr6	31602966	31602967	rs1046089	22267201	Stolk L	2012-01-22	Nat Genet	Meta-analyses identify 13 loci associated with age at menopause and highlight DNA repair and immune pathways.	Menopause (age at onset)	38,968 European ancestry female individuals	Up to 14,435 European ancestry female individuals	6p21.33	PRRC2A	rs1046089-A	0.353	2E-16		0.213	[0.16-0.26] years decrease	Affymetrix, Illumina [2551160] (imputed)	N
826	chr6	31603590	31603591	rs2261033	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PRRC2A	rs2261033-G	NR	3E-12		0.0196963	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
826	chr6	31603590	31603591	rs2261033	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	PRRC2A	rs2261033-G	NR	2E-12		0.0222106	[0.016-0.028] unit increase	Affymetrix [323858] (imputed)	N
826	chr6	31603590	31603591	rs2261033	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	PRRC2A	rs2261033-G	NR	5E-11		0.0185935	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
826	chr6	31603590	31603591	rs2261033	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	PRRC2A	rs2261033-G	NR	2E-10		0.0200207	[0.014-0.026] unit increase	Affymetrix [127266] (imputed)	N
826	chr6	31603590	31603591	rs2261033	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PRRC2A	rs2261033-G	NR	2E-11		0.0189094	[0.013-0.024] unit decrease	Affymetrix [321016] (imputed)	N
826	chr6	31603590	31603591	rs2261033	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	PRRC2A	rs2261033-G	NR	3E-24		0.0314057	[0.025-0.037] unit decrease	Affymetrix [323123] (imputed)	N
826	chr6	31603590	31603591	rs2261033	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	PRRC2A	rs2261033-G	NR	2E-12		0.0202126	[0.015-0.026] unit increase	Affymetrix [321169] (imputed)	N
826	chr6	31603590	31603591	rs2261033	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.33	PRRC2A	rs2261033-A	0.5235	9E-11		0.0461	[0.032-0.06] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
826	chr6	31604354	31604355	rs35502919	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	PRRC2A	rs35502919-A	NR	5E-11		0.0387702	[0.027-0.05] unit increase	Affymetrix [321169] (imputed)	N
826	chr6	31604354	31604355	rs35502919	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	6p21.33	NR	rs35502919-?		9E-14	(AGER)	0.631	[NR] unit decrease	Illumina [NR]	N
826	chr6	31604590	31604591	rs10885	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p21.33	PRRC2A	rs10885-T		2E-36		0.035	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
826	chr6	31604893	31604894	rs34137317	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first birth	542,901 European ancestry individuals	NA	6p21.33	PRRC2A	rs34137317-T	0.0277	6E-10		0.2473	[0.17-0.33] unit increase	NR [9744772] (imputed)	N
826	chr6	31605198	31605199	rs2736155	34741163	Eijsbouts C	2021-11-05	Nat Genet	Genome-wide analysis of 53,400 people with irritable bowel syndrome highlights shared genetic pathways with mood and anxiety disorders.	Irritable bowel syndrome	53,400 European ancestry cases, 433,201 European ancestry controls	205,252 European ancestry cases, 1,384,055 European ancestry controls	6p21.33	NR	rs2736155-C	0.4758	3E-12		0.022300169	[0.016-0.029] unit increase	Illumina [9885498] (imputed)	N
826	chr6	31605198	31605199	rs2736155	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	PRRC2A	rs2736155-C	NR	6E-10		0.0194264	[0.013-0.026] unit increase	Affymetrix [323858] (imputed)	N
826	chr6	31605198	31605199	rs2736155	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	PRRC2A	rs2736155-C	NR	8E-9		0.0180894	[0.012-0.024] unit increase	Affymetrix [127266] (imputed)	N
826	chr6	31605198	31605199	rs2736155	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Anxiety	at least 23,606 European ancestry cases, at least 113,351 European ancestry controls	624,615 European ancestry cases, 1,310,854 European ancestry controls	6p21.33	PRRC2A	rs2736155-G	0.4811	5E-18		0.019583363	[0.015-0.025] unit decrease	NR [9417325] (imputed)	N
826	chr6	31605198	31605199	rs2736155	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p21.33	NR	rs2736155-C	0.478	6E-7		0.0059	[0.0035-0.0083] unit increase	NR [7666894] (imputed)	N
826	chr6	31605447	31605448	rs7889	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	6p21.33	BAG6	rs7889-C	0.3609	3E-8		0.012577614	[0.0082-0.017] unit increase	Affymetrix [11514654] (imputed)	N
826	chr6	31605447	31605448	rs7889	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	6p21.33	PRRC2A	rs7889-C	0.3904	4E-14		0.2499	[0.19-0.31] mmHg decrease	Affymetrix [NR] (imputed)	N
826	chr6	31606375	31606376	rs2077491	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	BAG6	rs2077491-C	NR	8E-13		0.0219509	[0.016-0.028] unit decrease	Affymetrix [323123] (imputed)	N
826	chr6	31606375	31606376	rs2077491	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	BAG6	rs2077491-C	NR	2E-15		0.0226711	[0.017-0.028] unit increase	Affymetrix [321169] (imputed)	N
826	chr6	31606375	31606376	rs2077491	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA	6p21.33	NR	rs2077491-?	NR	5E-6		0.0322	[0.018-0.046] unit decrease	Illumina [at least 560000] (imputed)	N
826	chr6	31606666	31606670	rs757744062	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.33	BAG6	rs757744062-CAAAA	0.8204	4E-8		0.0522	[0.034-0.071] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
826	chr6	31606755	31606756	rs2178899	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	6p21.33	NA	rs2178899-A	0.8833	5E-23		0.0243	[0.019-0.029] unit increase	NR [~ 27400000] (imputed)	N
826	chr6	31607049	31607050	rs750332	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls	NA	6p21.33	BAG6	rs750332-C	0.180658	4E-14		0.055028614	[0.041-0.069] unit decrease	Affymetrix [7288503] (imputed)	N
826	chr6	31610528	31610529	rs1077393	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	6p21.33	HLA-C	rs1077393-A	0.477302	2E-8		5.65	z score decrease	NR [10847151] (imputed)	N
826	chr6	31610528	31610529	rs1077393	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling worry	372,869 European ancestry individuals	NA	6p21.33	HLA-C	rs1077393-A	0.477302	4E-10		6.267	unit decrease	NR [10847151] (imputed)	N
826	chr6	31611498	31611498	rs751715213	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	BAG6	rs751715213-CAAAAAAAAAA	NR	7E-9		0.0198369	[0.013-0.027] unit decrease	Affymetrix [319769] (imputed)	N
826	chr6	31611498	31611498	rs751715213	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	BAG6	rs751715213-CAAAAAAAAAA	NR	3E-14		0.0288432	[0.021-0.036] unit decrease	Affymetrix [323858] (imputed)	N
826	chr6	31611498	31611498	rs751715213	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	BAG6	rs751715213-CAAAAAAAAAA	NR	4E-8		0.0187898	[0.012-0.025] unit decrease	Affymetrix [319769] (imputed)	N
826	chr6	31611498	31611498	rs751715213	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	BAG6	rs751715213-CAAAAAAAAAA	NR	4E-13		0.0275826	[0.02-0.035] unit decrease	Affymetrix [127266] (imputed)	N
826	chr6	31611498	31611498	rs751715213	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	BAG6	rs751715213-CAAAAAAAAAA	NR	3E-8		0.0190286	[0.012-0.026] unit increase	Affymetrix [321016] (imputed)	N
826	chr6	31611498	31611498	rs751715213	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	BAG6	rs751715213-CAAAAAAAAAA	NR	3E-10		0.0235731	[0.016-0.031] unit increase	Affymetrix [323123] (imputed)	N
826	chr6	31611498	31611498	rs751715213	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	BAG6	rs751715213-CAAAAAAAAAA	NR	3E-10		0.0218162	[0.015-0.029] unit decrease	Affymetrix [321169] (imputed)	N
826	chr6	31611498	31611498	rs751715213	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p21.33	BAG6	rs751715213-CAAAAAAAAAA	NR	4E-9		0.0222292	[0.015-0.03] unit decrease	Affymetrix [323858] (imputed)	N
826	chr6	31613738	31613739	rs3130048	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6p21.33	NR	rs3130048-?	NR	1E-11				Affymetrix [~ 8270000] (imputed)	N
826	chr6	31613738	31613739	rs3130048	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	6p21.33	NA	rs3130048-T	0.7315	2E-20		0.0169	[0.013-0.02] unit decrease	NR [~ 27400000] (imputed)	N
826	chr6	31616365	31616366	rs805303	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Systolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	6p21.33	BAT2, BAT5	rs805303-A	0.382	6E-6	(EA, initial)	0.368	[0.21-0.53] unit decrease	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
826	chr6	31616365	31616366	rs805303	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Diastolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	6p21.33	BAT2, BAT5	rs805303-A	0.382	4E-6	(EA, initial)	0.23	[0.13-0.33] unit decrease	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
826	chr6	31616365	31616366	rs805303	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Systolic blood pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	6p21.33	BAT2, BAT5	rs805303-A	0.3958	3E-6	(EA)	0.0174	unit decrease	Illumina [242296]	N
826	chr6	31616365	31616366	rs805303	21909115	Ehret GB	2011-09-11	Nature	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Systolic blood pressure	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	6p21.33	BAT2, BAT5	rs805303-G	0.61	2E-11		0.376	[NR] mmHg increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
826	chr6	31616365	31616366	rs805303	21909115	Ehret GB	2011-09-11	Nature	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Hypertension	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	6p21.33	BAT2, BAT5	rs805303-G	0.61	1E-10		0.054	[NR] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
826	chr6	31616365	31616366	rs805303	21909115	Ehret GB	2011-09-11	Nature	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Diastolic blood pressure	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	6p21.33	BAT2, BAT5	rs805303-G	0.61	3E-11		0.228	[NR] mmHg increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
826	chr6	31620133	31620134	rs2736201	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6p21.33	BAG6	rs2736201-C	0.156392	7E-12		0.036189657	[0.026-0.047] unit increase	Affymetrix [93095623] (imputed)	N
826	chr6	31620133	31620134	rs2736201	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	6p21.33	BAG6	rs2736201-C	0.156492	3E-71		0.06142095	[0.055-0.068] unit increase	Affymetrix [93095623] (imputed)	N
826	chr6	31620519	31620520	rs3117582	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Squamous cell lung carcinoma	8,350 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	6p21.33	NR	rs3117582-G	NR	2E-9		0.77	[0.71-0.84]	NR [NR] (imputed)	N
826	chr6	31620519	31620520	rs3117582	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Non-small cell lung cancer	27,120 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	6p21.33	NR	rs3117582-G	NR	2E-6		0.87	[0.82-0.92]	NR [NR] (imputed)	N
826	chr6	31620519	31620520	rs3117582	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p21.33	BAT3, APOM	rs3117582-C	0.34	1E-30				Illumina [118177]	N
826	chr6	31620519	31620520	rs3117582	19836008	Landi MT	2009-10-15	Am J Hum Genet	A genome-wide association study of lung cancer identifies a region of chromosome 5p15 associated with risk for adenocarcinoma.	Lung adenocarcinoma	5,739 European ancestry cases, 5,848 European ancestry controls	7,561 European ancestry cases, 13,818 European ancestry controls	6p21.33	APOM, BAT3	rs3117582-C	0.10	5E-12		1.22	[1.15-1.29]	Illumina [515922]	N
826	chr6	31620519	31620520	rs3117582	19654303	Broderick P	2009-08-04	Cancer Res	Deciphering the impact of common genetic variation on lung cancer risk: a genome-wide association study.	Lung cancer	1,952 European ancestry cases, 1,438 European ancestry controls	2,465 European ancestry cases, 3,005 European ancestry controls, 3,143 individuals, 3,762 individuals	6p21.33	BAT3	rs3117582-?	NR	4E-10		1.24	[1.16-1.33]	Illumina [511919]	N
826	chr6	31620519	31620520	rs3117582	18978787	Wang Y	2008-11-02	Nat Genet	Common 5p15.33 and 6p21.33 variants influence lung cancer risk.	Lung cancer	5,095 European ancestry cases, 5,200 European ancestry controls	2,448 European ancestry cases, 2,983 European ancestry controls	6p21.33	BAT3, MSH5	rs3117582-C	NR	5E-10		1.24	[1.16-1.33]	Illumina [223891]	N
826	chr6	31622042	31622043	rs1266078	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	APOM	rs1266078-G	0.032	3E-12	(Apolipoprotein M, APOM.10445.20.3)	0.49	[0.35-0.63] unit decrease	Affymetrix [10572788] (imputed)	N
826	chr6	31622605	31622606	rs805297	21844665	Hu HJ	2011-08-16	Exp Mol Med	Common variants at the promoter region of the APOM confer a risk of rheumatoid arthritis.	Rheumatoid arthritis	100 Korean ancestry cases, 600 Korean ancestry controls	578 Korean ancestry cases, 711 Korean ancestry controls	6p21.33	APOM	rs805297-A	0.36	3E-10		1.56	[1.36-1.80]	Affymetrix [300909]	N
826	chr6	31624464	31624465	rs113947529	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ISG15	5,349 Icelandic ancestry individuals	NA	6p21.33		rs113947529-T	0.01503	5E-16		0.622819	[0.47-0.77] unit decrease	Illumina [7506463] (imputed)	N
826	chr6	31628112	31628113	rs805263	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p21.33	C6orf47	rs805263-C	0.026972	3E-12		0.049836818	[0.036-0.064] unit increase	Affymetrix [93095623] (imputed)	N
826	chr6	31628396	31628397	rs148844907	33608531	Wu Y	2021-02-19	Nat Commun	GWAS of peptic ulcer disease implicates Helicobacter pylori infection, other gastrointestinal disorders and depression.	Inflammatory bowel disease	7,045 European ancestry cases, 449,282 European ancestry controls	NA	6p21.33	NR	rs148844907-T	0.99	1E-40		0.47	[NR]	NR [8546065] (imputed)	N
826	chr6	31628396	31628397	rs148844907	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p21.33	C6orf47	rs148844907-A	0.01	2E-12		1.92	[1.74-2.12]	Illumina [at least 560000] (imputed)	N
826	chr6	31628732	31628733	rs805262	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (mother's age at death or mother's attained age)	up to 699,000 individuals	NA	6p21.33	NR	rs805262-G		7E-7				Illumina [458525]	N
826	chr6	31630830	31630831	rs805260	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	GPANK1	rs805260-G	NR	8E-13		0.0307796	[0.022-0.039] unit decrease	Affymetrix [323123] (imputed)	N
826	chr6	31631333	31631334	rs76072474	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	6p21.33	NR	rs76072474-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
826	chr6	31631333	31631334	rs76072474	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	6p21.33	NR	rs76072474-?	NR	1E-11				Affymetrix [~ 8270000] (imputed)	N
826	chr6	31632133	31632134	rs3130618	25344690	Feenstra B	2014-10-26	Nat Genet	Common variants associated with general and MMR vaccine-related febrile seizures.	Febrile seizures (MMR vaccine-related)	929 European ancestry cases, 4,118 European ancestry controls	Up to 408 European ancestry cases, Up to 1,645 European ancestry controls	6p21.33	GPANK1	rs3130618-C	0.79	2E-7		1.34	[1.20-1.49]	Illumina [8129524] (imputed)	N
826	chr6	31632133	31632134	rs3130618	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.33	BAT4	rs3130618-A	0.1811	2E-56		3.03	[NR]	Illumina [242824]	N
826	chr6	31635942	31635943	rs115820082	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	CSNK2B, CSNK2B-LY6G5B-1181	rs115820082-G	NR	4E-12		0.0902636	[0.065-0.116] unit decrease	Affymetrix [321016] (imputed)	N
826	chr6	31636030	31636031	rs3117578	31375628	Tengvall K	2019-08-02	Proc Natl Acad Sci U S A	Molecular mimicry between Anoctamin 2 and Epstein-Barr virus nuclear antigen 1 associates with multiple sclerosis risk.	Anti-anoctamin 2 antibody levels	11,936 European ancestry individuals	NA	6p21.33	NR	rs3117578-A	NR	2E-7		0.063	[0.034-0.092] unit increase	Illumina [615763]	N
826	chr6	31636741	31636742	rs9267531	26316170	Demirci FY	2015-08-28	Arthritis Rheumatol	Identification of a New Susceptibility Locus for Systemic Lupus Erythematosus on Chromosome 12 in Individuals of European Ancestry.	Systemic lupus erythematosus	661 European ancestry cases, 487 European ancestry controls	4,467 European ancestry cases, 9,114 European ancestry controls	6p21.33	CSNK2B	rs9267531-?	NR	8E-8				Affymetrix [up to 700598]	N
826	chr6	31636741	31636742	rs9267531	25827949	Kunz M	2015-05-04	Exp Dermatol	Genome-wide association study identifies new susceptibility loci for cutaneous lupus erythematosus.	Cutaneous lupus erythematosus	151 European ancestry cases, 1,288 European ancestry controls	219 European ancestry cases, 262 European ancestry controls	6p21.33	CSNK2B, MSH5, MICA, MICB	rs9267531-G	0.1	3E-14		2.62	[1.93-3.54]	Affymetrix [906600]	N
826	chr6	31638177	31638178	rs805268	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p21.33		rs805268-A	0.969	9E-19				Affymetrix [10369434] (imputed)	N
826	chr6	31651193	31651194	rs9267536	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6p21.33	BAT5	rs9267536-?	NR	6E-6	(TAG 52:6)	0.34227857	[0.19-0.49] unit increase	Affymetrix [at least 2500000] (imputed)	N
826	chr6	31665451	31665452	rs805273	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	ABHD16A, XXbac-BPG32J3.20, MIR4646	rs805273-A	0.06820461	5E-16	(Complement C4)	0.699	[0.53-0.87] unit increase	Affymetrix [509946]	N
826	chr6	31666288	31666288	rs9281557	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.33	Intergenic	rs9281557-?	NR	2E-8		0.0260612	[0.017-0.035] unit decrease	Illumina [13520550] (imputed)	N
826	chr6	31666288	31666288	rs9281557	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.33	Intergenic	rs9281557-?	NR	2E-7	(women)	0.0341653	[0.021-0.047] unit decrease	Illumina [13520550] (imputed)	N
826	chr6	31666288	31666288	rs9281557	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	6p21.33	Intergenic	rs9281557-?	NR	1E-18		0.0471724	[0.037-0.058] unit decrease	Illumina [13520550] (imputed)	N
826	chr6	31669495	31669496	rs1266071	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	6p21.33	ABHD16A, XXbac-BPG32J3.20	rs1266071-T	0.107214	4E-14		0.027769113	[0.021-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
826	chr6	31672267	31672268	rs34406901	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	6p21.33	XXbac-BPG32J3.20	rs34406901-G	0.0566	7E-15		0.039119102	[0.029-0.049] unit increase	Affymetrix [93095623] (imputed)	N
826	chr6	31673435	31673436	rs9267546	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LIPA	5,367 Icelandic ancestry individuals	NA	6p21.33		rs9267546-A	0.08009	2E-15		0.274526	[0.21-0.34] unit increase	Illumina [7506463] (imputed)	N
826	chr6	31675764	31675765	rs2242653	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	6p21.33	NR	rs2242653-?	NR	3E-10	(MIC-A)	0.545677	[0.38-0.71] unit decrease	Illumina [11901634] (imputed)	N
826	chr6	31675984	31675985	rs9267548	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p21.33	NR	rs9267548-?	NR	5E-9		0.1189	[0.079-0.159] unit decrease	Illumina [at least 560000] (imputed)	N
826	chr6	31679464	31679465	rs805285	33941608	Khan A	2021-05-03	J Am Soc Nephrol	Medical Records-Based Genetic Studies of the Complement System.	Complement C4 levels	3,247 European ancestry individuals, 600 African ancestry individuals, 151 East Asian ancestry individuals	NA	6p21.33	C4	rs805285-C	0.32	1E-14		0.19	[0.15-0.22] unit increase	NR [NR] (imputed)	N
826	chr6	31679464	31679465	rs805285	33941608	Khan A	2021-05-03	J Am Soc Nephrol	Medical Records-Based Genetic Studies of the Complement System.	Complement C4 levels	3,247 European ancestry individuals, 600 African ancestry individuals, 151 East Asian ancestry individuals	NA	6p21.33	C4	rs805285-C	0.25	2E-10	(EA)	0.18	[0.14-0.22] unit increase	NR [NR] (imputed)	N
826	chr6	31686496	31686497	rs15574	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking initiation (ever regular vs never regular)	up to 433,216 European ancestry individuals	NA	6p21.33	LY6G6C	rs15574-A	0.194	7E-9		0.0159	[0.011-0.021] unit increase	Illumina [~ 250000] (imputed)	N
826	chr6	31688216	31688217	rs805294	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.33		rs805294-A	0.644	4E-13				Affymetrix [10369434] (imputed)	N
826	chr6	31688517	31688518	rs805293	31879980	German CA	2019-12-26	Genet Epidemiol	Ordered multinomial regression for genetic association analysis of ordinal phenotypes at Biobank scale.	Hypertension	30,822 British ancestry normal blood pressure individuals, 25,242 British ancestry elevated blood pressure individuals, 50,461 British ancestry stage 1 hypertension individuals, 75,286 British ancestry stage 2 hypertension individuals, 3,754 British ancestry hypertension crisis individuals	NA	6p21.33	MPIG6B	rs805293-?	NR	3E-12		0.0433015	NR unit decrease	Affymetrix [464137]	N
826	chr6	31688517	31688518	rs805293	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	6p21.33	NR	rs805293-A	0.46	8E-9		0.00643097	[0.0042-0.0086] unit decrease	NR [9732723] (imputed)	N
826	chr6	31691656	31691657	rs453098	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SEMA6C	5,362 Icelandic ancestry individuals	NA	6p21.33		rs453098-A	0.07505	1E-13		0.264219	[0.19-0.33] unit increase	Illumina [7506463] (imputed)	N
826	chr6	31691656	31691657	rs453098	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PCDHGA11	5,360 Icelandic ancestry individuals	NA	6p21.33		rs453098-A	0.07505	4E-12		0.237269	[0.17-0.3] unit increase	Illumina [7506463] (imputed)	N
826	chr6	31691656	31691657	rs453098	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HSPA1A	5,360 Icelandic ancestry individuals	NA	6p21.33		rs453098-A	0.07505	8E-15		0.272702	[0.2-0.34] unit increase	Illumina [7506463] (imputed)	N
826	chr6	31692385	31692386	rs11575845	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C6orf25	5,363 Icelandic ancestry individuals	NA	6p21.33		rs11575845-G	0.03386	7E-46		0.736966	[0.64-0.84] unit decrease	Illumina [7506463] (imputed)	N
826	chr6	31692385	31692386	rs11575845	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6p21.33		rs11575845-?	NR	4E-7		0.890554	[0.85-0.94]	NR [685523]	N
826	chr6	31692385	31692386	rs11575845	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	6p21.33	C6orf25	rs11575845-G	0.06333	6E-27		0.05543542	[0.045-0.066] unit increase	Affymetrix [93095623] (imputed)	N
826	chr6	31697386	31697387	rs805305	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C6orf25	5,363 Icelandic ancestry individuals	NA	6p21.33		rs805305-G	0.32	4E-22		0.196057	[0.16-0.24] unit increase	Illumina [7506463] (imputed)	N
826	chr6	31697557	31697558	rs707916	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling nervous	373,121 European ancestry individuals	NA	6p21.33	CCHCR1	rs707916-A	0.365563	2E-13		7.35	z score decrease	NR [10847151] (imputed)	N
826	chr6	31704410	31704411	rs115204832	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ISG15	5,349 Icelandic ancestry individuals	NA	6p21.33		rs115204832-G	0.01432	1E-183		2.1193	[1.98-2.26] unit decrease	Illumina [7506463] (imputed)	N
826	chr6	31704410	31704411	rs115204832	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C2	5,363 Icelandic ancestry individuals	NA	6p21.33		rs115204832-G	0.01432	1E-282		2.53186	[2.39-2.67] unit decrease	Illumina [7506463] (imputed)	N
826	chr6	31705125	31705126	rs145269503	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	6p21.33	CLIC1	rs145269503-A	0.0221	3E-36		0.1547004	[0.13-0.18] unit decrease	Affymetrix [~ 2500000] (imputed)	N
826	chr6	31706849	31706850	rs2736154	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		6p21.33	CLIC1	rs2736154-A	0.790274	4E-8		0.0109563	[0.007-0.0149] unit increase	Affymetrix [12370749]	N
826	chr6	31706851	31706852	rs396369	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	6p21.33		rs396369-T	NR	2E-15		0.0202	[0.015-0.025] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
826	chr6	31707525	31707526	rs28381344	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	6p21.33	NR	rs28381344-A	0.0438845616860758	1E-8		0.020618176	[0.014-0.028] unit increase	NR [NR]	N
826	chr6	31707525	31707526	rs28381344	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	6p21.33	NR	rs28381344-A	0.0438845616860758	1E-8		0.013281214	[0.0087-0.0179] unit increase	NR [NR]	N
826	chr6	31707525	31707526	rs28381344	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Strep throat	52,487 European ancestry cases, 22,017 European ancestry controls	NA	6p21.33	NR	rs28381344-?	NR	1E-6		0.0694	[0.041-0.098] unit decrease	Illumina [at least 560000] (imputed)	N
826	chr6	31707729	31707730	rs3131382	32752121	Nedoszytko B	2020-07-31	Int J Mol Sci	Results from a Genome-Wide Association Study (GWAS) in Mastocytosis Reveal New Gene Polymorphisms Associated with WHO Subgroups.	Systemic mastocytosis	93 European ancestry cases, 5,606 European ancestry controls	NA	6p21.33	MSH5	rs3131382-A	0.03194	9E-7		3.247	[2.75-3.74]	Illumina [281811]	N
826	chr6	31707729	31707730	rs3131382	32752121	Nedoszytko B	2020-07-31	Int J Mol Sci	Results from a Genome-Wide Association Study (GWAS) in Mastocytosis Reveal New Gene Polymorphisms Associated with WHO Subgroups.	Mastocytosis	234 European ancestry cases, 5,606 European ancestry controls	NA	6p21.33	MSH5	rs3131382-A	0.03194	3E-8		2.602	[2.25-2.95]	Illumina [281811]	N
826	chr6	31708146	31708147	rs409558	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	CLIC1, MSH5-SAPCD1, MSH5, SAPCD1-AS1, RNU6-850P, SAPCD1, VARS, VWA7	rs409558-C	0.1591365	1E-10	(EA, Complement C4)	0.3861	[0.27-0.5] unit increase	Affymetrix [509946]	N
826	chr6	31708146	31708147	rs409558	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Systolic blood pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	154,543 European ancestry individuals, 26,183 South Asian ancestry individuals	6p21.33	MSH5, SAPCD1	rs409558-G	0.176	6E-8		0.33	[0.21-0.45] unit decrease	Illumina [247039]	N
826	chr6	31708146	31708147	rs409558	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Pulse pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	154,543 European ancestry individuals, 26,183 South Asian ancestry individuals	6p21.33	MSH5, SAPCD1	rs409558-G	0.176	3E-9		0.26	[0.18-0.34] unit decrease	Illumina [247039]	N
826	chr6	31708909	31708910	rs28381348	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p21.33	MSH5	rs28381348-C	0.04	5E-6	(EA)	2.81	[1.77-4.47]	Illumina [up to 547389]	N
826	chr6	31709348	31709349	rs1144709	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	6p21.33	Intergenic	rs1144709-T	0.2281	3E-10	(MTAG)	0.0134	[0.0093-0.0175] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
826	chr6	31709348	31709349	rs1144709	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	6p21.33	Intergenic	rs1144709-C	0.7719	6E-9		0.0135	[0.009-0.018] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
826	chr6	31709348	31709349	rs1144709	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	6p21.33	Intergenic	rs1144709-C	0.7725	3E-10		0.017	[0.012-0.022] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
826	chr6	31710103	31710104	rs28381350	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	6p21.33	PRRC2A	rs28381350-A	0.1297	5E-9	(S1P d16:1)	0.1104	[0.073-0.147] unit decrease	Illumina [~ 47000000] (imputed)	N
826	chr6	31713453	31713454	rs3828922	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	CLIC1, MSH5-SAPCD1, MSH5, SAPCD1-AS1, RNU6-850P, SAPCD1, VARS, VWA7	rs3828922-T	0.1584754	2E-19	(EA, MHC class I polypeptide-related sequence A)	0.5315	[0.42-0.64] unit decrease	Affymetrix [509946]	N
826	chr6	31717691	31717692	rs3117572	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MSH5, MSH5-SAPCD1	rs3117572-A	NR	2E-9		0.023199	[0.016-0.031] unit increase	Affymetrix [323123] (imputed)	N
826	chr6	31717691	31717692	rs3117572	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	MSH5, MSH5-SAPCD1	rs3117572-A	NR	7E-10		0.0221723	[0.015-0.029] unit decrease	Affymetrix [321169] (imputed)	N
827	chr6	31721032	31721033	rs3131379	26316170	Demirci FY	2015-08-28	Arthritis Rheumatol	Identification of a New Susceptibility Locus for Systemic Lupus Erythematosus on Chromosome 12 in Individuals of European Ancestry.	Systemic lupus erythematosus	661 European ancestry cases, 487 European ancestry controls	4,467 European ancestry cases, 9,114 European ancestry controls	6p21.33	MSH5	rs3131379-?	NR	8E-8				Affymetrix [up to 700598]	N
827	chr6	31721032	31721033	rs3131379	18204446	Harley JB	2008-01-20	Nat Genet	Genome-wide association scan in women with systemic lupus erythematosus identifies susceptibility variants in ITGAM, PXK, KIAA1542 and other loci.	Systemic lupus erythematosus	720 European ancestry female cases, 2,337 European ancestry female controls	1,846 European ancestry female cases, 1,825 European ancestry female controls	6p21.33	HLA region	rs3131379-A	0.1	2E-52		2.36	[2.11-2.64]	Illumina [317501]	N
827	chr6	31722779	31722780	rs3130486	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (anilides)	83,218 European ancestry cases, 96,592 European ancestry controls	NA	6p21.33	MSH5	rs3130486-T	0.265164	1E-13		0.05492751	[0.04-0.069] unit decrease	Affymetrix [7288503] (imputed)	N
827	chr6	31725284	31725285	rs3131378	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	6p21.33	MSH5-SAPCD1	rs3131378-G	0.098896646	3E-18		1.1810031	[1.137601617-1.226060343]	Illumina [10439017] (imputed)	N
827	chr6	31726687	31726688	rs707939	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MSH5, MSH5-SAPCD1	rs707939-A	NR	4E-10		0.0204551	[0.014-0.027] unit decrease	Affymetrix [323123] (imputed)	N
827	chr6	31726687	31726688	rs707939	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.33	ABHD16A, AIF1, APOM, BAG6, C2, C2-AS1, C4A, C4B, C4B_2, C6orf25, C6orf47, C6orf48, CFB, CLIC1, CSNK2B, CYP21A1P, CYP21A2, DDAH2, DXO, EHMT2, GPANK1, HSPA1A, HSPA1B, HSPA1L, LSM2, LY6G5B, LY6G5C, LY6G6C, LY6G6D, LY6G6E, LY6G6F, MIR1236, MIR4646, MIR6832, MSH5, MSH5-SAPCD1, NELFE, NEU1, PRRC2A, SAPCD1, SAPCD1-AS1, SKIV2L, SLC44A4, SNORA38, SNORD48, SNORD52, STK19, TNXA, TNXB, VARS, VWA7, ZBTB12	rs707939-A		4E-12		1.07	[1.05-1.09]	Affymetrix, Illumina [NR]	N
827	chr6	31726849	31726850	rs17207524	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	6p21.33	MSH5	rs17207524-T	0.06447	3E-8		1.09	NR	Affymetrix [9154080] (imputed)	N
827	chr6	31726849	31726850	rs17207524	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs17207524-G	0.96171875	3E-9	(TGM3, 4471_50_2)	0.3747752	[0.25-0.5] unit increase	Illumina [> 1000000] (imputed)	N
827	chr6	31726849	31726850	rs17207524	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs17207524-G	0.96171875	1E-31	(G6B, 7065_1_4)	0.7349115	[0.61-0.86] unit increase	Illumina [> 1000000] (imputed)	N
827	chr6	31726849	31726850	rs17207524	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs17207524-G	0.96171875	1E-14	(C4A C4B, 4481_34_2)	0.5052215	[0.38-0.63] unit decrease	Illumina [> 1000000] (imputed)	N
827	chr6	31727896	31727897	rs3115672	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Squamous cell lung carcinoma	8,350 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	6p21.33	NR	rs3115672-T	NR	2E-8		1.28	[1.17-1.39]	NR [NR] (imputed)	N
827	chr6	31727896	31727897	rs3115672	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Non-small cell lung cancer	27,120 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	6p21.33	NR	rs3115672-T	NR	4E-6		1.15	[1.08-1.22]	NR [NR] (imputed)	N
827	chr6	31727896	31727897	rs3115672	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	6p21.33	NR	rs3115672-T	0.113634053654599	4E-15		0.014519162	[0.011-0.018] unit decrease	NR [NR]	N
827	chr6	31727896	31727897	rs3115672	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	6p21.33	NR	rs3115672-T	0.113634053654599	6E-15		0.018733539	[0.014-0.023] unit decrease	NR [NR]	N
827	chr6	31727896	31727897	rs3115672	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	6p21.33	NR	rs3115672-T	0.113634053654599	5E-14		0.015431175	[0.011-0.019] unit decrease	NR [NR]	N
827	chr6	31727896	31727897	rs3115672	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	6p21.33	NR	rs3115672-T	0.113634053654599	2E-15		0.0121121025	[0.0091-0.0151] unit decrease	NR [NR]	N
827	chr6	31727988	31727989	rs61748589	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C4A;C4B	5,362 Icelandic ancestry individuals	NA	6p21.33		rs61748589-G	0.01635	1E-9		0.440324	[0.3-0.58] unit decrease	Illumina [7506463] (imputed)	N
827	chr6	31728266	31728267	rs2075801	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	CLIC1, MSH5-SAPCD1, MSH5, SAPCD1-AS1, RNU6-850P, SAPCD1, VARS, VWA7	rs2075801-A	0.1582915	8E-15	(EA, gp41 C34 peptide, HIV)	0.4506	[0.34-0.56] unit increase	Affymetrix [509946]	N
827	chr6	31729358	31729359	rs707938	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	6p21.33	NR	rs707938-A	0.319085	5E-9		0.039337814	[0.026-0.053] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
827	chr6	31729358	31729359	rs707938	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	6p21.33	Intergenic	rs707938-A	0.6802	4E-9		0.018	[0.012-0.024] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
827	chr6	31729358	31729359	rs707938	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p21.33	NR	rs707938-?	NR	9E-7		4.905	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
827	chr6	31729358	31729359	rs707938	29773799	Horikoshi M	2018-05-17	Nat Commun	Elucidating the genetic architecture of reproductive ageing in the Japanese population.	Menarche (age at onset)	67,029 Japanese ancestry women	73,397 European ancestry women	6p21.33	NR	rs707938-A	0.5873	1E-12	(japanese)	0.189	[0.14-0.24] year increase	Illumina [at least 532488] (imputed)	N
827	chr6	31729358	31729359	rs707938	26414677	Day FR	2015-11-01	Nat Genet	Large-scale genomic analyses link reproductive aging to hypothalamic signaling, breast cancer susceptibility and BRCA1-mediated DNA repair.	Menopause (age at onset)	up to 69,626 European ancestry women	NA	6p21.33	MSH5, HLA	rs707938-G	0.32	7E-15		0.17	[0.13-0.21] years decrease	Affymetrix, Illumina [~ 2600000] (imputed)	N
827	chr6	31729924	31729925	rs1802127	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.33	NR	rs1802127-T	0.016	3E-6	(women)	0.571389	[0.33-0.81] unit increase	Affymetrix [up to 8900000] (imputed)	N
827	chr6	31729924	31729925	rs1802127	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.33	NR	rs1802127-T	0.016	1E-10		0.461925	[0.32-0.6] unit increase	Affymetrix [up to 8900000] (imputed)	N
827	chr6	31730750	31730751	rs28399987	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs28399987-?		7E-8		1.06	[1.04-1.09]	Illumina [7645193] (imputed)	N
827	chr6	31730750	31730751	rs28399987	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p21.33	MSH5, C6orf26	rs28399987-A	0.02	8E-8	(Turkish)	3.55	[2.17-5.79]	Illumina [up to 547389]	N
827	chr6	31733465	31733466	rs3101017	33909500	Moll M	2021-04-28	Am J Physiol Lung Cell Mol Physiol	A Systematic Analysis of Protein-altering Exonic Variants in Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease	up to 31,465 European ancestry cases, up to 203,688 European ancestry controls, up to 1,413 African ancestry cases, up to 6,080 African ancestry controls, up to 287 East Asian ancestry cases, up to 7,484 East Asian ancestry controls, up to 61 Hispanic cases, up to 613 Hispanic controls	NA	6p21.33	VWA7	rs3101017-C	0.13	2E-14		1.12	[1.09 -1.15]	Illumina [at least 109036]	N
827	chr6	31733465	31733466	rs3101017	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p21.33	VWA7	rs3101017-C		2E-35		0.041	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
827	chr6	31733950	31733952	rs9279411	28067912	Lee JC	2017-01-09	Nat Genet	Genome-wide association study identifies distinct genetic contributions to prognosis and susceptibility in Crohn's disease.	Poor prognosis in Crohn's disease	1,762 Northern European ancestry poor prognosis cases, 972 Northern European ancestry good prognosis controls.		6p21.33	MHC	rs9279411-?	NR	5E-9		1.67	[1.41-2.00]	Affymetrix, Illumina [at least 7000000] (imputed)	N
827	chr6	31738407	31738408	rs9461721	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.33		rs9461721-A	0.972	3E-27				Affymetrix [10369434] (imputed)	N
827	chr6	31739119	31739120	rs3130490	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	6p21.33	NR	rs3130490-?	NR	5E-10				Affymetrix [~ 8270000] (imputed)	N
827	chr6	31739119	31739120	rs3130490	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	6p21.33	NR	rs3130490-?	NR	2E-14				Affymetrix [~ 8270000] (imputed)	N
827	chr6	31739497	31739498	rs143029752	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs143029752-?		3E-8		1.78	[1.45-2.19]	Illumina [7645193] (imputed)	N
827	chr6	31739683	31739684	rs191306205	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	6p21.33	NR	rs191306205-?	NR	1E-9	(CCL19)	0.542377	[0.37-0.72] unit increase	Illumina [11901634] (imputed)	N
827	chr6	31739729	31739730	rs527960948	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on switched memory B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs527960948-C	0.09002	2E-9		0.3289	[0.22-0.44] unit increase	Illumina [18238311] (imputed)	N
827	chr6	31739729	31739730	rs527960948	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on IgD- CD38- B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs527960948-C	0.09002	4E-8		0.2922	[0.19-0.4] unit increase	Illumina [18238311] (imputed)	N
827	chr6	31740453	31740454	rs805825	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.33		rs805825-G	0.561	1E-14				Affymetrix [10369434] (imputed)	N
827	chr6	31740453	31740454	rs805825	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p21.33		rs805825-G	0.561	2E-10				Affymetrix [10369434] (imputed)	N
827	chr6	31741658	31741659	rs707930	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	6p21.33	NR	rs707930-T	0.477089	4E-14		0.0517342	[0.038-0.065] unit decrease	Affymetrix [17914406] (imputed)	N
827	chr6	31742241	31742242	rs6914412	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Mean platelet volume	21,347 Hispanic or Latin American individuals	NA	6p21.33		rs6914412-T	0.1345	4E-7		0.1401	[0.086-0.194] unit increase	Affymetrix, Illumina [NR] (imputed)	N
827	chr6	31742241	31742242	rs6914412	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	6p21.33	VWA7	rs6914412-C	0.0959	9E-11		0.03949006	[0.028-0.051] unit increase	Affymetrix [~ 2500000] (imputed)	N
827	chr6	31742589	31742590	rs707928	33563987	Tyrrell J	2021-02-09	Nat Commun	Genetic predictors of participation in optional components of UK Biobank.	Percentage of invited food questionnaires completed	300,639 European ancestry individuals	NA	6p21.33	NR	rs707928-A	0.66	8E-9		0.54	[0.36-0.72] unit decrease	Affymetrix [39302896] (imputed)	N
827	chr6	31742589	31742590	rs707928	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling worry	372,869 European ancestry individuals	NA	6p21.33	SAPCD1	rs707928-A	0.346873	2E-8		5.643	unit increase	NR [10847151] (imputed)	N
827	chr6	31745463	31745464	rs3130491	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Diastolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	6p21.33	VARS	rs3130491-A	0.3561	4E-14		0.317	[0.23-0.4] mmHg decrease	Affymetrix [NR] (imputed)	N
827	chr6	31745517	31745518	rs707927	31932636	Hebbar P	2020-01-13	Sci Rep	Genome-wide association study identifies novel risk variants from RPS6KA1, CADPS, VARS, and DHX58 for fasting plasma glucose in Arab population.	Fasting plasma glucose	1,353 Arab ancestry individuals	1,176 Arab ancestry individuals	6p21.33	VARS, VWA7	rs707927-G	NR	3E-9		5.928	[NR] unit increase	Illumina [632375]	N
827	chr6	31746547	31746548	rs909267	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	VARS	rs909267-C	NR	2E-8		0.0322466	[0.021-0.043] unit decrease	Affymetrix [321016] (imputed)	N
827	chr6	31749141	31749142	rs915652	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p21.33	VARS	rs915652-A	0.337	4E-32				Illumina [118177]	N
827	chr6	31755775	31755776	rs9469053	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on IgD- CD38dim B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs9469053-G	0.18398	1E-10		0.2372	[0.16-0.31] unit increase	Illumina [18238311] (imputed)	N
827	chr6	31758930	31758931	rs6899983	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Aspartate aminotransferase levels in low alcohol consumption	8,716 individuals	NA	6p21.33	NR	rs6899983-?	NR	2E-7		0.1467	[0.092-0.202] unit increase	Illumina [~ 7800000] (imputed)	N
827	chr6	31761062	31761063	rs9469054	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	6p21.33	VARS	rs9469054-A	0.0247	1E-20		0.1068719	[0.084-0.129] unit increase	Affymetrix [~ 2500000] (imputed)	N
827	chr6	31761864	31761865	rs3115670	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	6p21.33	VARS	rs3115670-T	NR	1E-19		0.0626938	[0.049-0.076] unit decrease	Illumina [13520550] (imputed)	N
827	chr6	31762842	31762843	rs2607015	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	VARS	rs2607015-C	NR	5E-12		0.0196764	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
827	chr6	31762842	31762843	rs2607015	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	VARS	rs2607015-C	NR	3E-8		0.0175576	[0.011-0.024] unit increase	Affymetrix [323858] (imputed)	N
827	chr6	31762842	31762843	rs2607015	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	VARS	rs2607015-C	NR	4E-11		0.0188809	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
827	chr6	31762843	31762844	rs2753960	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	VARS	rs2753960-T	NR	1E-8		0.0161747	[0.011-0.022] unit decrease	Affymetrix [321016] (imputed)	N
827	chr6	31762843	31762844	rs2753960	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	VARS	rs2753960-T	NR	3E-11		0.0207398	[0.015-0.027] unit decrease	Affymetrix [323123] (imputed)	N
827	chr6	31762843	31762844	rs2753960	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	VARS	rs2753960-T	NR	3E-14		0.0219625	[0.016-0.028] unit increase	Affymetrix [321169] (imputed)	N
827	chr6	31762843	31762844	rs2753960	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	6p21.33	VARS	rs2753960-T	0.4128	2E-14		0.02776258	[0.021-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
827	chr6	31765863	31765864	rs1144710	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	6p21.33	LSM2	rs1144710-T	NR	2E-11		0.192529	[0.14-0.25] unit increase	Illumina [at least 950000] (imputed)	N
827	chr6	31765863	31765864	rs1144710	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA	6p21.33	NR	rs1144710-?	NR	6E-6		0.0474	[0.027-0.068] unit increase	Illumina [at least 560000] (imputed)	N
827	chr6	31765863	31765864	rs1144710	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p21.33	NR	rs1144710-?	NR	2E-10		0.0847	[0.059-0.111] unit increase	Illumina [at least 560000] (imputed)	N
827	chr6	31777686	31777687	rs34636308	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	6p21.33	NR	rs34636308-?	NR	5E-14		7.528	NR z score decrease	Illumina [at least 830937] (imputed)	N
827	chr6	31778076	31778077	rs2227955	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	C6orf48, HSPA1L, LSM2, HSPA1A, SNORD52, SNORD48, NEU1, SLC44A4	rs2227955-G	0.02306921	4E-9	(EA, gp41 C34 peptide, HIV)	0.8484	[0.57-1.13] unit increase	Affymetrix [509946]	N
827	chr6	31778076	31778077	rs2227955	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	C6orf48, HSPA1L, LSM2, HSPA1A, SNORD52, SNORD48, NEU1, SLC44A4	rs2227955-G	0.02306921	4E-13	(EA, Neutrophil collagenase)	1.024	[0.75-1.3] unit increase	Affymetrix [509946]	N
827	chr6	31778271	31778272	rs2227956	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CCL19	5,367 Icelandic ancestry individuals	NA	6p21.33		rs2227956-G	0.2402	7E-14		0.167141	[0.12-0.21] unit increase	Illumina [7506463] (imputed)	N
827	chr6	31778528	31778529	rs2075799	23028341	Yang X	2012-09-13	PLoS Genet	Genome-wide association study for serum complement C3 and C4 levels in healthy Chinese subjects.	Complement C3 and C4 levels	1,999 Han Chinese ancestry male individuals	1,496 Han Chinese ancestry male individuals	6p21.33	C4	rs2075799-T	0.20	6E-97	(Serum level of C4)	0.17	[0.15-0.19] g/L decrease	Illumina [1940245] (imputed)	N
827	chr6	31780238	31780239	rs115333512	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL36A	5,364 Icelandic ancestry individuals	NA	6p21.33		rs115333512-T	0.07275	7E-16		0.295426	[0.22-0.37] unit decrease	Illumina [7506463] (imputed)	N
827	chr6	31781956	31781957	rs12213612	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p21.33	NR	rs12213612-?	NR	1E-8		0.1635	[0.11-0.22] unit increase	Illumina [at least 560000] (imputed)	N
827	chr6	31783506	31783507	rs1043618	32589924	Bi W	2020-06-23	Am J Hum Genet	A Fast and Accurate Method for Genome-Wide Time-to-Event Data Analysis and Its Application to UK Biobank.	Cataract (time to event)	22,635 British ancestry cases, 260,236 British ancestry controls	NA	6p21.33	HSPA1A46	rs1043618-?	NR	4E-8				NR [~ 24000000] (imputed)	N
827	chr6	31785227	31785228	rs506770	34642315	Ferreiro-Iglesias A	2021-10-12	Nat Commun	Germline determinants of humoral immune response to HPV-16 protect against oropharyngeal cancer.	Oropharynx cancer and human papilloma virus 16 negative oropharyngeal cancer	2,359 European ancestry cases, 565 European ancestry controls	NA	6p21.33		rs506770-C	NR	2E-6		1.2434		Illumina [up to 7574753] (imputed)	N
827	chr6	31786364	31786365	rs17201192	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.33	HSPA1L	rs17201192-T	0.023301	2E-14		0.058121365	[0.043-0.073] unit increase	Affymetrix [93095623] (imputed)	N
827	chr6	31786962	31786963	rs2763977	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HSPA1A	rs2763977-A	NR	2E-10		0.028855	[0.02-0.038] unit increase	Affymetrix [319769] (imputed)	N
827	chr6	31786962	31786963	rs2763977	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HSPA1A	rs2763977-A	NR	4E-10		0.0284684	[0.02-0.037] unit increase	Affymetrix [319769] (imputed)	N
827	chr6	31789385	31789385	rs139759813	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HSPA1A	rs139759813-GA	NR	2E-9		0.0236752	[0.016-0.031] unit decrease	Affymetrix [127266] (imputed)	N
827	chr6	31794591	31794592	rs2763979	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)(bidirectional)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.33		rs2763979-C	NR	2E-14				Affymetrix [7846216] (imputed)	N
827	chr6	31794591	31794592	rs2763979	32771030	Tangtanatakul P	2020-08-08	Arthritis Res Ther	Meta-analysis of genome-wide association study identifies FBN2 as a novel locus associated with systemic lupus erythematosus in Thai population.	Systemic lupus erythematosus	487 Thai cases, 1,606 Thai controls	405 Thai cases, 1,590 Thai controls	6p21.33	HSPA1A, HSPA1B	rs2763979-A	0.36	6E-6		1.2994	[NR]	Illumina [421909] (imputed)	N
827	chr6	31799075	31799076	rs3115674	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.33	NR	rs3115674-T	0.983	1E-8		0.652	[0.51-0.8]	Illumina [11270530] (imputed)	N
827	chr6	31799352	31799353	rs34278010	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs34278010-G	0.977	3E-44				Affymetrix [10369434] (imputed)	N
827	chr6	31800867	31800868	rs2471980	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Prostate cancer	7,438 White British ancestry cases, 118,206 White British ancestry controls	NA	6p21.33		rs2471980-?	NR	2E-6		0.915623	[0.88-0.95]	NR [680312]	N
827	chr6	31802464	31802465	rs4711279	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs4711279-C	0.824607758652095	1E-6	(IGP41)	0.1858	[0.11-0.26] unit decrease	Illumina [~ 2500000] (imputed)	N
827	chr6	31802464	31802465	rs4711279	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs4711279-C	0.824401248864668	4E-6	(IGP1)	0.1774	[0.1-0.25] unit decrease	Illumina [~ 2500000] (imputed)	N
827	chr6	31802464	31802465	rs4711279	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs4711279-C	0.823257144469526	3E-7	(IGP19)	0.1964	[0.12-0.27] unit decrease	Illumina [~ 2500000] (imputed)	N
827	chr6	31802540	31802541	rs9368699	20041166	Fellay J	2009-12-24	PLoS Genet	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	6p21.33	SNORD52	rs9368699-?	NR	5E-8	(progression)			Illumina [NR]	N
827	chr6	31803062	31803063	rs763298451	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	C6orf48, SNORD48	rs763298451-CT	NR	1E-12		0.0394762	[0.029-0.05] unit increase	Affymetrix [323123] (imputed)	N
827	chr6	31803129	31803130	rs17201248	26151496	Chen PL	2015-07-07	Nat Commun	Genetic determinants of antithyroid drug-induced agranulocytosis by human leukocyte antigen genotyping and genome-wide association study.	Thionamide-induced agranulocytosis in Graves' disease	21 East Asian ancestry cases with agranulocytosis, 662 East Asian ancestry cases without agranulocytosis	21 East Asian ancestry cases with agranulocytosis, 546 East Asian ancestry cases without agranulocytosis	6p21.33	HLA	rs17201248-T	0.092	3E-7	(trend)	3.48	[2.09-5.81] (allelic)	Affymetrix [522980]	N
827	chr6	31804728	31804729	rs11968400	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	6p21.33	C6orf48	rs11968400-?	NR	6E-12		0.0655868	[0.047-0.084] unit increase	Illumina [4804024] (imputed)	N
827	chr6	31805599	31805600	rs115487693	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	6p21.33	C6orf48	rs115487693-C	0.0445	4E-21		0.08313974	[0.066-0.1] unit decrease	Affymetrix [~ 2500000] (imputed)	N
827	chr6	31808435	31808436	rs599707	29904099	Kottyan LC	2018-06-08	Genes Immun	Genetic variants at the 16p13 locus confer risk for eosinophilic esophagitis.	Eosinophilic esophagitis	1,210 European ancestry cases, 3,734 European ancestry controls	NA	6p21.33	C6orf48, HSPA1B	rs599707-?	0.886	3E-9		1.6920472		Illumina [79405]	N
827	chr6	31808727	31808728	rs117217736	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.33	NR	rs117217736-T	0.991	1E-12		0.479	[0.28-0.68]	Illumina [11270530] (imputed)	N
827	chr6	31810116	31810119	rs74887990	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	6p21.33	C6orf48	rs74887990-T	0.0231	6E-16		0.063891105	[0.048-0.079] unit increase	Affymetrix [93095623] (imputed)	N
827	chr6	31811562	31811563	rs3130479	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	C6orf48	rs3130479-A	NR	2E-10		0.0294674	[0.02-0.038] unit increase	Affymetrix [321169] (imputed)	N
827	chr6	31812037	31812038	rs9267576	31375628	Tengvall K	2019-08-02	Proc Natl Acad Sci U S A	Molecular mimicry between Anoctamin 2 and Epstein-Barr virus nuclear antigen 1 associates with multiple sclerosis risk.	Anti-anoctamin 2 antibody levels	11,936 European ancestry individuals	NA	6p21.33	NR	rs9267576-A	NR	2E-8		0.07	[0.041-0.099] unit increase	Illumina [615763]	N
827	chr6	31812971	31812972	rs144527861	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	6p21.33	PRRC2A	rs144527861-A	0.1297	2E-9	(S1P d16:1)	0.115	[0.078-0.152] unit decrease	Illumina [~ 47000000] (imputed)	N
827	chr6	31816058	31816059	rs28732162	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p21.33	NR	rs28732162-?	NR	7E-17		0.1769	[0.14-0.22] unit increase	Illumina [at least 560000] (imputed)	N
827	chr6	31818107	31818108	rs9267578	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	NEU1	rs9267578-T	NR	6E-10		0.025611	[0.018-0.034] unit decrease	Affymetrix [319769] (imputed)	N
827	chr6	31820642	31820643	rs2736429	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling nervous	373,121 European ancestry individuals	NA	6p21.33	NR	rs2736429-A	0.384863	6E-12		6.89	z score increase	NR [10847151] (imputed)	N
827	chr6	31821181	31821182	rs370025470	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	6p21.33	NEU1	rs370025470-C	0.030144	3E-16		0.056601908	[0.043-0.07] unit increase	Affymetrix [93095623] (imputed)	N
827	chr6	31821938	31821939	rs35745547	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	NEU1	rs35745547-A	NR	1E-9		0.0190063	[0.013-0.025] unit increase	Affymetrix [321169] (imputed)	N
827	chr6	31822614	31822615	rs9267647	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	6p21.33	NEU1	rs9267647-T	0.132946	4E-11		0.022519508	[0.016-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
827	chr6	31823255	31823256	rs115310850	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.33	NR	rs115310850-A	0.01	2E-11		0.616842	[0.44-0.8] unit increase	Affymetrix [up to 8900000] (imputed)	N
827	chr6	31824911	31824912	rs9267650	27539887	Chahal HS	2016-08-19	Nat Commun	Genome-wide association study identifies 14 novel risk alleles associated with basal cell carcinoma.	Basal cell carcinoma	12.945 European ancestry cases, 274,252 European ancestry controls	4,242 European ancestry cases, 12,802 European ancestry controls	6p21.33	NEU1	rs9267650-T	0.05	1E-8		1.17	[NR]	Illumina [at least 560000] (imputed)	N
827	chr6	31826704	31826705	rs622076	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C2	5,363 Icelandic ancestry individuals	NA	6p21.33		rs622076-A	0.1077	2E-23		0.300008	[0.24-0.36] unit increase	Illumina [7506463] (imputed)	N
827	chr6	31826704	31826705	rs622076	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	6p21.33	NEU1	rs622076-A	0.1361	3E-14	(discovery)	0.0035	[0.0025-0.0045] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
827	chr6	31827285	31827286	rs13118	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6p21.33	SLC44A4	rs13118-?	NR	5E-6	(TAG 52:6)	0.3502205	[0.2-0.5] unit increase	Affymetrix [at least 2500000] (imputed)	N
827	chr6	31835161	31835162	rs74290525	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	NA	6p21.33	SLC44A4	rs74290525-G		1E-12	(conditional)	2.06	[NR]	Illumina [> 644674] (imputed)	N
827	chr6	31835163	31835164	rs693906	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	6p21.33		rs693906-C	NR	2E-33		0.029	[0.024-0.034] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
827	chr6	31835163	31835164	rs693906	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Scarlet fever	6,812 European ancestry cases, 113,837 European ancestry controls	NA	6p21.33	NR	rs693906-?	NR	7E-6		0.1149	[0.065-0.164] unit decrease	Illumina [at least 560000] (imputed)	N
827	chr6	31836441	31836442	rs542418	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.33	NR	rs542418-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
827	chr6	31836441	31836442	rs542418	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	6p21.33	NR	rs542418-?	NR	3E-6		0.0552	[0.032-0.078] unit increase	Illumina [at least 560000] (imputed)	N
827	chr6	31836826	31836827	rs521977	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	SLC44A4	rs521977-T	NR	9E-19		0.0294152	[0.023-0.036] unit decrease	Affymetrix [323858] (imputed)	N
827	chr6	31836826	31836827	rs521977	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	SLC44A4	rs521977-T	NR	3E-16		0.0271844	[0.021-0.034] unit decrease	Affymetrix [127266] (imputed)	N
827	chr6	31836826	31836827	rs521977	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Perceived unattractiveness to mosquitoes	16,576 European ancestry individuals	NA	6p21.33	SLC44A4	rs521977-T	0.276	4E-7		0.131107	[0.08-0.182] unit increase	Illumina [7433384] (imputed)	N
827	chr6	31836826	31836827	rs521977	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	6p21.33	SLC44A4	rs521977-T	NR	9E-7		0.0192183	[0.012-0.027] unit increase	Illumina [13519193] (imputed)	N
827	chr6	31836826	31836827	rs521977	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	6p21.33	SLC44A4	rs521977-T	NR	4E-20		0.0380858	[0.03-0.046] unit increase	Illumina [13520550] (imputed)	N
827	chr6	31837065	31837066	rs11966200	20526339	Quan C	2010-06-06	Nat Genet	Genome-wide association study for vitiligo identifies susceptibility loci at 6q27 and the MHC.	Vitiligo	1,117 Han Chinese ancestry cases, 1,429 Han Chinese ancestry controls	6,623 East Asian ancestry cases, 10,740 East Asian ancestry controls	6p21.33	HLA-C, HLA-B	rs11966200-A	0.06	1E-48		1.9	[1.74-2.07]	Illumina [493909]	N
827	chr6	31837276	31837277	rs660550	31837886	Kennedy OJ	2019-12-02	Am J Kidney Dis	Coffee Consumption and Kidney Function: A Mendelian Randomization Study.	Coffee consumption (cups per day)	227,666 British ancestry individuals	NA	6p21.33	SLC44A4	rs660550-A	0.525	8E-9		0.034	NR cups per day decrease	NR [NR]	N
827	chr6	31837962	31837963	rs577272	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs577272-G	NR	6E-9		0.0164512	[0.011-0.022] unit decrease	Affymetrix [321114] (imputed)	N
827	chr6	31837962	31837963	rs577272	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs577272-G	NR	1E-21		0.0272058	[0.022-0.033] unit decrease	Affymetrix [321169] (imputed)	N
827	chr6	31837962	31837963	rs577272	27286809	Ligthart S	2016-06-10	BMC Genomics	Bivariate genome-wide association study identifies novel pleiotropic loci for lipids and inflammation.	C-reactive protein levels or total cholesterol levels (pleiotropy)	65,000 individuals (C-reactive protein), 100,184 individuals (total cholesterol)	NA	6p21.33	SLC44A4	rs577272-A	NR	2E-8				NR [2501549] (imputed)	N
827	chr6	31838489	31838490	rs644774	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs644774-C	NR	4E-22		0.0271946	[0.022-0.033] unit decrease	Affymetrix [319769] (imputed)	N
827	chr6	31838489	31838490	rs644774	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs644774-C	NR	6E-21		0.0263821	[0.021-0.032] unit decrease	Affymetrix [319769] (imputed)	N
827	chr6	31838489	31838490	rs644774	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs644774-C	NR	2E-13		0.0206859	[0.015-0.026] unit increase	Affymetrix [321016] (imputed)	N
827	chr6	31838712	31838713	rs494620	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs494620-A	NR	1E-13		0.0214886	[0.016-0.027] unit increase	Affymetrix [319769] (imputed)	N
827	chr6	31838712	31838713	rs494620	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	SLC44A4	rs494620-A	NR	4E-10		0.0201809	[0.014-0.026] unit increase	Affymetrix [323858] (imputed)	N
827	chr6	31838712	31838713	rs494620	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs494620-A	NR	6E-13		0.0208264	[0.015-0.027] unit increase	Affymetrix [319769] (imputed)	N
827	chr6	31838712	31838713	rs494620	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	SLC44A4	rs494620-A	NR	6E-9		0.0187173	[0.012-0.025] unit increase	Affymetrix [127266] (imputed)	N
827	chr6	31838712	31838713	rs494620	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs494620-A	NR	7E-16		0.0236685	[0.018-0.029] unit increase	Affymetrix [321169] (imputed)	N
827	chr6	31838712	31838713	rs494620	19448619	Stolk L	2009-05-15	Nat Genet	Loci at chromosomes 13, 19 and 20 influence age at natural menopause.	Menopause (age at onset)	2,979 European ancestry female individuals	2,560 European ancestry female individuals	6p21.33	NR	rs494620-?	NR	5E-7		0.3	[0.18-0.42] years increase	Illumina [315418]	N
827	chr6	31839781	31839782	rs3130482	31879980	German CA	2019-12-26	Genet Epidemiol	Ordered multinomial regression for genetic association analysis of ordinal phenotypes at Biobank scale.	Hypertension	30,822 British ancestry normal blood pressure individuals, 25,242 British ancestry elevated blood pressure individuals, 50,461 British ancestry stage 1 hypertension individuals, 75,286 British ancestry stage 2 hypertension individuals, 3,754 British ancestry hypertension crisis individuals	NA	6p21.33	SLC44A4	rs3130482-?	NR	1E-10		0.03993774	NR unit increase	Affymetrix [464137]	N
827	chr6	31840020	31840021	rs2763981	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs2763981-T	NR	6E-27		0.0318493	[0.026-0.038] unit decrease	Affymetrix [319769] (imputed)	N
827	chr6	31840020	31840021	rs2763981	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs2763981-T	NR	3E-25		0.0308309	[0.025-0.037] unit decrease	Affymetrix [319769] (imputed)	N
827	chr6	31840020	31840021	rs2763981	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs2763981-T	NR	3E-8		0.0165328	[0.011-0.022] unit decrease	Affymetrix [321114] (imputed)	N
827	chr6	31840020	31840021	rs2763981	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	SLC44A4	rs2763981-T	NR	2E-27		0.0349933	[0.029-0.041] unit increase	Affymetrix [323123] (imputed)	N
827	chr6	31840020	31840021	rs2763981	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs2763981-T	NR	1E-24		0.0307655	[0.025-0.037] unit decrease	Affymetrix [321169] (imputed)	N
827	chr6	31840020	31840021	rs2763981	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	6p21.33	SLC44A4	rs2763981-A	NR	8E-14				Affymetrix, Illumina [NR] (imputed)	N
827	chr6	31840020	31840021	rs2763981	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	6p21.33	SLC44A4	rs2763981-A	NR	1E-18	(EA)			Affymetrix, Illumina [NR] (imputed)	N
827	chr6	31840020	31840021	rs2763981	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	6p21.33	SLC44A4	rs2763981-A	NR	3E-19	(EA)			Affymetrix, Illumina [NR] (imputed)	N
827	chr6	31840020	31840021	rs2763981	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	6p21.33	SLC44A4	rs2763981-A	NR	1E-14				Affymetrix, Illumina [NR] (imputed)	N
827	chr6	31840020	31840021	rs2763981	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	6p21.33	SLC44A4	rs2763981-A	NR	6E-14	(EA)	0.021	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
827	chr6	31840020	31840021	rs2763981	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	6p21.33	SLC44A4	rs2763981-A	NR	1E-10		0.015	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
827	chr6	31840020	31840021	rs2763981	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	6p21.33	SLC44A4	rs2763981-A	NR	4E-6		0.012	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
827	chr6	31840020	31840021	rs2763981	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	6p21.33	SLC44A4	rs2763981-A	NR	2E-8	(EA)	0.021	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
827	chr6	31840020	31840021	rs2763981	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	6p21.33	SLC44A4	rs2763981-A	NR	5E-11				Affymetrix, Illumina [NR] (imputed)	N
827	chr6	31840020	31840021	rs2763981	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	6p21.33	SLC44A4	rs2763981-A	NR	3E-11	(EA)			Affymetrix, Illumina [NR] (imputed)	N
827	chr6	31840020	31840021	rs2763981	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	6p21.33	SLC44A4	rs2763981-A	NR	7E-12				Affymetrix, Illumina [NR] (imputed)	N
827	chr6	31840020	31840021	rs2763981	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	6p21.33	SLC44A4	rs2763981-A	NR	4E-12	(EA)			Affymetrix, Illumina [NR] (imputed)	N
827	chr6	31840020	31840021	rs2763981	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	6p21.33	SLC44A4	rs2763981-A	NR	6E-9	(EA)	1.145	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
827	chr6	31840020	31840021	rs2763981	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	6p21.33	SLC44A4	rs2763981-A	NR	3E-9		1.01	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
827	chr6	31840020	31840021	rs2763981	30670697	Kilpelainen TO	2019-01-22	Nat Commun	Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity.	Triglycerides x physical activity interaction (2df test)	7,294 African American inactive individuals, 12,832 African American active individuals, 1,352 Asian ancestry inactive individuals, 3,049 Asian ancestry active individuals, 20,622 European ancestry inactive individuals, 51,480 European ancestry active individuals, 2,166 Hispanic or Latin American inactive individuals, 3,486 Hispanic or Latin American active individuals	580 African American inactive individuals, 1,540 African American active individuals, 1,217 South African Black ancestry inactive individuals, 389 South African Black ancestry active individuals, 765 East Asian ancestry inactive individuals, 1,814 East Asian ancestry active individuals,  724 South Asian ancestry inactive individuals, 1,424 South Asian ancestry active individuals, 32,456 European ancestry inactive individuals, 49,510 European ancestry active individuals, 2,619 Hispanic inactive individuals, 8,803 Hispanic active individuals	6p21.33	NR	rs2763981-A	0.7045	4E-14	(EA)			Affymetrix, Illumina [at least 2500000] (imputed)	N
827	chr6	31840020	31840021	rs2763981	28334935	Raffield LM	2017-05-15	Hum Mol Genet	Genome-wide association study of iron traits and relation to diabetes in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL): potential genomic intersection of iron and glucose regulation?	Iron status biomarkers (total iron binding capacity)	12,586 Hispanic/Latino individuals	NA	6p21.33	SLC44A4	rs2763981-T	NR	8E-7		0.124	[0.075-0.173] unit decrease	Illumina [27700000] (imputed)	N
827	chr6	31840414	31840415	rs9267653	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs9267653-T	NR	9E-9		0.0178718	[0.012-0.024] unit decrease	Affymetrix [319769] (imputed)	N
827	chr6	31840414	31840415	rs9267653	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs9267653-T	NR	1E-8		0.0176946	[0.012-0.024] unit decrease	Affymetrix [319769] (imputed)	N
827	chr6	31840414	31840415	rs9267653	26423011	Wain LV	2015-09-27	Lancet Respir Med	Novel insights into the genetics of smoking behaviour, lung function, and chronic obstructive pulmonary disease (UK BiLEVE): a genetic association study in UK Biobank.	Lung function (low FEV1 vs high FEV1)	19,493 European ancestry individuals with low FEV1 measurements, 9,808 European ancestry individuals with high FEV1 measurements	NA	6p21.33	SLC44A4	rs9267653-C	NR	4E-9		0.124	[0.083-0.165] unit increase	Affymetrix [28509962] (imputed)	N
827	chr6	31840454	31840455	rs553108	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls	NA	6p21.33	SLC44A4	rs553108-A	0.418103	2E-10		0.0516698	[0.036-0.068] unit decrease	Affymetrix [7288503] (imputed)	N
827	chr6	31840454	31840455	rs553108	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Ease of getting up in the morning	385,949 European ancestry individuals	NA	6p21.33	NR	rs553108-A	0.4159	3E-8		0.0097	[0.0062-0.0132] unit increase	Affymetrix, Illumina [10862568] (imputed)	N
827	chr6	31840476	31840477	rs501942	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	6p21.33	NR	rs501942-T	0.09	3E-19		1.26	[1.2-1.32]	Illumina [8468885] (imputed)	N
827	chr6	31840476	31840477	rs501942	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in ever smokers	23,223 European ancestry cases,  16,964 European ancestry controls	NA	6p21.33	SLC44A4	rs501942-T	0.101035865	3E-14		1.2034894	[1.147434239-1.262282973]	Illumina [10439017] (imputed)	N
827	chr6	31840476	31840477	rs501942	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	6p21.33	SLC44A4	rs501942-T	0.098642093	8E-19		1.1851386	[1.141406179-1.230546538]	Illumina [10439017] (imputed)	N
827	chr6	31841008	31841009	rs9267654	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs9267654-A	NR	2E-12		0.0251845	[0.018-0.032] unit decrease	Affymetrix [319769] (imputed)	N
827	chr6	31841008	31841009	rs9267654	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs9267654-A	NR	3E-12		0.0249577	[0.018-0.032] unit decrease	Affymetrix [319769] (imputed)	N
827	chr6	31841008	31841009	rs9267654	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs9267654-A	NR	4E-10		0.0223343	[0.015-0.029] unit increase	Affymetrix [321016] (imputed)	N
827	chr6	31841889	31841890	rs573098	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs573098-A	NR	2E-20		0.0279205	[0.022-0.034] unit increase	Affymetrix [321016] (imputed)	N
827	chr6	31841889	31841890	rs573098	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p21.33	SLC44A4	rs573098-A	NR	1E-9		0.0200634	[0.014-0.027] unit decrease	Affymetrix [323858] (imputed)	N
827	chr6	31841889	31841890	rs573098	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	6p21.33	NR	rs573098-T	0.679422	2E-12		0.0509102	[0.037-0.065] unit decrease	Affymetrix [17914406] (imputed)	N
827	chr6	31842597	31842598	rs12661281	25629512	Cheng CY	2015-01-28	Nat Commun	New loci and coding variants confer risk for age-related macular degeneration in East Asians.	Exudative age-related macular degeneration	2,119 East Asian ancestry cases, 5,691 East Asian ancestry controls	4,226 East Asian ancestry cases, 10,289 East Asian ancestry controls	6p21.33	SLC44A4	rs12661281-?	NR	1E-11		1.27	[NR]	Illumina [4471719] (imputed)	N
827	chr6	31843923	31843924	rs2736428	20421499	Levy D	2010-04-26	Proc Natl Acad Sci U S A	Genome-wide association identifies OBFC1 as a locus involved in human leukocyte telomere biology.	Telomere length	3,417 European ancestry individuals	1,893 African American and European ancestry individuals, 2,876 European ancestry individuals	6p21.33	SLC44A4	rs2736428-T	NR	3E-6		0.05	[0.03-0.07] kb increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
827	chr6	31845984	31845985	rs9267658	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6p21.33		rs9267658-T	0.1428	5E-12		0.0138	[0.0099-0.0177] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
827	chr6	31846072	31846073	rs114400264	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		SLC44A4	rs114400264-?	NR	5E-9	(male)	2.81252	[NR] unit decrease	Affymetrix [NR] (imputed)	N
827	chr6	31846233	31846234	rs9267659	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	6p21.33	SLC44A4	rs9267659-A	0.2004	4E-11		0.079	[0.056-0.102] unit increase	NR [7784415] (imputed)	N
827	chr6	31846899	31846900	rs114951054	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		EHMT2-AS1	rs114951054-?	NR	2E-9	(male)	2.96479	[NR] unit decrease	Affymetrix [NR] (imputed)	N
827	chr6	31847011	31847012	rs605203	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	6p21.33	NR	rs605203-A	0.62	4E-43		0.025	[0.021-0.029] unit increase	Affymetrix [2446094] (imputed)	N
827	chr6	31847011	31847012	rs605203	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	6p21.33	NR	rs605203-A	0.62	5E-8				Affymetrix [2446094] (imputed)	N
827	chr6	31847417	31847418	rs116369005	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	6p21.33	SLC44A4, EHMT2-AS1	rs116369005-C	0.021645	3E-10		0.052029066	[0.036-0.068] unit increase	Affymetrix [93095623] (imputed)	N
827	chr6	31847635	31847636	rs41267086	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C4A;C4B	5,353 Icelandic ancestry individuals	NA	6p21.33		rs41267086-A	0.09194	2E-44		0.435404	[0.37-0.5] unit decrease	Illumina [7506463] (imputed)	N
827	chr6	31847635	31847636	rs41267086	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.33	NR	rs41267086-?	NR	6E-12				Affymetrix [~ 8270000] (imputed)	N
827	chr6	31848219	31848220	rs589428	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI in non-smokers	75,379 European ancestry women, 45,811 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	6p21.33	EHMT2	rs589428-G	0.651	2E-10	(EA)	0.016	[0.01-0.022] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
827	chr6	31848219	31848220	rs589428	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	6p21.33	EHMT2	rs589428-G	0.65	1E-17	(EA)	0.024	[0.018-0.03] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
827	chr6	31848439	31848440	rs41267090	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p21.33	EHMT2	rs41267090-T	0.05	8E-7	(EA)	2.82	[1.84-4.33]	Illumina [up to 547389]	N
827	chr6	31850307	31850308	rs74434374	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NCR3	5,364 Icelandic ancestry individuals	NA	6p21.33		rs74434374-A	0.07046	4E-24		0.354873	[0.29-0.42] unit decrease	Illumina [7506463] (imputed)	N
828	chr6	31851233	31851234	rs652888	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	EHMT2	rs652888-G	NR	3E-10		0.0207108	[0.014-0.027] unit decrease	Affymetrix [319769] (imputed)	N
828	chr6	31851233	31851234	rs652888	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	EHMT2	rs652888-G	NR	1E-9		0.0200442	[0.014-0.027] unit decrease	Affymetrix [319769] (imputed)	N
828	chr6	31851233	31851234	rs652888	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	EHMT2	rs652888-G	NR	1E-9		0.02033	[0.014-0.027] unit decrease	Affymetrix [321169] (imputed)	N
828	chr6	31851233	31851234	rs652888	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p21.33	EHMT2	rs652888-G	NR	2E-8		0.0206131	[0.013-0.028] unit decrease	Affymetrix [323858] (imputed)	N
828	chr6	31851233	31851234	rs652888	27157822	Hallberg P	2016-05-03	Lancet Diabetes Endocrinol	Genetic variants associated with antithyroid drug-induced agranulocytosis: a genome-wide association study in a European population.	Anti-thyroid drug induced agranulocytosis	38 European ancestry cases, 1 case, 5,170 European ancestry controls	NA	6p21.33	EHMT2	rs652888-?	NR	2E-11		4.73	[3.00-7.44]	Illumina [9380034] (imputed)	N
828	chr6	31851233	31851234	rs652888	25802187	Jiang DK	2015-04-28	Hepatology	Genetic variants in five novel loci including CFB and CD40 predispose to chronic hepatitis B.	Chronic hepatitis B infection	2,514 Chinese ancestry cases, 1,130 Chinese ancestry controls	6,600 Chinese ancestry cases, 8,127 Chinese ancestry controls	6p21.33	EHMT2	rs652888-G	0.24	1E-6		1.14	[1.08-1.19]	Illumina [3680900] (imputed)	N
828	chr6	31851233	31851234	rs652888	23760081	Kim YJ	2013-06-10	Hum Mol Genet	A genome-wide association study identified new variants associated with the risk of chronic hepatitis B.	Chronic hepatitis B infection	400 Korean ancestry cases, 1,000 Korean ancestry controls	971 Korean ancestry cases, 1,938 Korean ancestry controls	6p21.33	EHMT2	rs652888-?	NR	7E-13		1.38	[1.22-1.57]	Illumina [719265]	N
828	chr6	31851233	31851234	rs652888	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.33	EHMT2	rs652888-C	0.2021	3E-46		2.71	[NR]	Illumina [242824]	N
828	chr6	31851468	31851469	rs2844458	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	EHMT2	rs2844458-A	NR	5E-9		0.0178304	[0.012-0.024] unit increase	Affymetrix [319769] (imputed)	N
828	chr6	31851468	31851469	rs2844458	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	EHMT2	rs2844458-A	NR	3E-8		0.0170038	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
828	chr6	31856069	31856070	rs486416	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	6p21.33		rs486416-A	0.6376	6E-9		0.013	[0.0091-0.0169] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
828	chr6	31856069	31856070	rs486416	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	6p21.33	EHMT2	rs486416-G	0.34730000000000005	1E-9		1.0203034		Affymetrix [11880941] (imputed)	N
828	chr6	31858529	31858530	rs34929649	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	EHMT2	rs34929649-C	NR	3E-13		0.0219327	[0.016-0.028] unit increase	Affymetrix [321169] (imputed)	N
828	chr6	31860831	31860832	rs115699278	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p21.33	EHMT2	rs115699278-T	0.011501	2E-9		0.06559309	[0.044-0.087] unit decrease	Affymetrix [93095623] (imputed)	N
828	chr6	31862875	31862876	rs115062572	33841421	Li J	2021-03-25	Front Immunol	Variants at the MHC Region Associate With Susceptibility to <i>Clostridioides difficile</i> Infection: A Genome-Wide Association Study Using Comprehensive Electronic Health Records.	Clostridioides difficle infection in antibiotics-users	587 European ancestry cases, 3,166 European ancestry controls	NA	6p21.33	ZBTB12	rs115062572-T	0.022	1E-6		2.29	[1.7-2.98]	Illumina [64973696] (imputed)	N
828	chr6	31862875	31862876	rs115062572	33841421	Li J	2021-03-25	Front Immunol	Variants at the MHC Region Associate With Susceptibility to <i>Clostridioides difficile</i> Infection: A Genome-Wide Association Study Using Comprehensive Electronic Health Records.	Clostridioides difficle infection	1,160 European ancestry cases, 14,144 European ancestry controls	NA	6p21.33	ZBTB12, EHMT2, C2, CYP21A2	rs115062572-T	0.0203	4E-6		1.74	[1.41-2.08]	Illumina [64973696] (imputed)	N
828	chr6	31862875	31862876	rs115062572	32641083	Hillary RF	2020-07-08	Genome Med	Multi-method genome- and epigenome-wide studies of inflammatory protein levels in healthy older adults.	Tumor necrosis factor beta levels	982 Scottish ancestry individuals	NA	6p21.33	NR	rs115062572-T	0.01979	5E-10		1.23251	[0.84-1.62] unit decrease	Illumina [7903493] (imputed)	N
828	chr6	31862875	31862876	rs115062572	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.33		rs115062572-T	0.02316600000000002	2E-8		1.0846895	[1.05-1.11]	Affymetrix, Illumina [9851866] (imputed)	N
828	chr6	31863167	31863168	rs17207748	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		EHMT2	rs17207748-?	NR	6E-9	(male)	2.35655	[NR] unit decrease	Affymetrix [NR] (imputed)	N
828	chr6	31863432	31863433	rs2243873	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	6p21.33	SLC44A4, EHMT2, STK19, CYP21A2, TNXB	rs2243873-?	NR	4E-11				Affymetrix, Illumina [18800000] (imputed)	N
828	chr6	31863432	31863433	rs2243873	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	6p21.33	SLC44A4, EHMT2, STK19, CYP21A2, TNXB	rs2243873-?	NR	3E-14	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
828	chr6	31863432	31863433	rs2243873	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	6p21.33	SLC44A4, EHMT2, STK19, CYP21A2, TNXB	rs2243873-?	NR	6E-10				Affymetrix, Illumina [18800000] (imputed)	N
828	chr6	31863432	31863433	rs2243873	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	6p21.33	SLC44A4, EHMT2, STK19, CYP21A2, TNXB	rs2243873-?		7E-13	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
828	chr6	31863432	31863433	rs2243873	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	6p21.33	SLC44A4, EHMT2, STK19, CYP21A2, TNXB	rs2243873-?	NR	4E-10				Affymetrix, Illumina [18800000] (imputed)	N
828	chr6	31863432	31863433	rs2243873	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	6p21.33	SLC44A4, EHMT2, STK19, CYP21A2, TNXB	rs2243873-?	NR	1E-10	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
828	chr6	31863432	31863433	rs2243873	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	6p21.33	SLC44A4, EHMT2, STK19, CYP21A2, TNXB	rs2243873-?	NR	6E-9				Affymetrix, Illumina [18800000] (imputed)	N
828	chr6	31863432	31863433	rs2243873	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	6p21.33	SLC44A4, EHMT2, STK19, CYP21A2, TNXB	rs2243873-?	NR	3E-9	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
828	chr6	31864537	31864538	rs115884658	32534018	Liu X	2020-06-10	Brain Behav Immun	Genetic factors underlying the bidirectional relationship between autoimmune and mental disorders - findings from a Danish population-based study.	Autoimmune traits	1,383 Danish ancestry cases, 62,656 Danish ancestry controls	NA	6p21.33	NR	rs115884658-A	0.047	2E-15		1.83	[1.6-2.1]	NR [7721839] (imputed)	N
828	chr6	31864537	31864538	rs115884658	29358691	Bonas-Guarch S	2018-01-22	Nat Commun	Re-analysis of public genetic data reveals a rare X-chromosomal variant associated with type 2 diabetes.	Type 2 diabetes	7,522 European ancestry cases, 50,446 European ancestry controls	35,789 African-American, East Asian, South Asian, European or Hispanic cases, 56,738 African-American, East Asian, South Asian, European or Hispanic controls	6p21.33	EHMT2	rs115884658-A	NR	3E-10		1.21	[1.14-1.29]	Affymetrix, Illumina [1918233] (imputed)	N
828	chr6	31864546	31864547	rs7887	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein EEF2K	5,361 Icelandic ancestry individuals	NA	6p21.33		rs7887-T	0.3571	6E-30		0.225707	[0.19-0.26] unit decrease	Illumina [7506463] (imputed)	N
828	chr6	31864546	31864547	rs7887	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C4A;C4B	5,362 Icelandic ancestry individuals	NA	6p21.33		rs7887-T	0.3571	8E-212		0.572662	[0.54-0.61] unit decrease	Illumina [7506463] (imputed)	N
828	chr6	31864673	31864674	rs2844456	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p21.33	NR	rs2844456-C	0.06	7E-13		0.82	[0.78-0.87]	Affymetrix [9886854] (imputed)	N
828	chr6	31864673	31864674	rs2844456	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p21.33	NR	rs2844456-C	0.06	9E-13			[NR]	Affymetrix [9886854] (imputed)	N
828	chr6	31864673	31864674	rs2844456	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in non-current smokers	16,488 European ancestry cases, 169,688 European ancestry controls	NA	6p21.33	NR	rs2844456-C	0.06	9E-13		0.82	[0.78-0.87]	Affymetrix [9886854] (imputed)	N
828	chr6	31864673	31864674	rs2844456	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	6p21.33	NR	rs2844456-?		4E-16	(AGER)	0.6356	[NR] unit decrease	Illumina [NR]	N
828	chr6	31866132	31866133	rs118097312	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Red blood cell count	108,794 Japanese ancestry individuals	NA	6p21.33	NR	rs118097312-?	NR	1E-10		0.05623	[0.039-0.073] unit decrease novel	Illumina [6108953] (imputed)	N
828	chr6	31866846	31866846	rs750497811	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.33	C2	rs750497811-GA	NR	7E-11		0.0409958	[0.029-0.053] unit increase	Affymetrix [321114] (imputed)	N
828	chr6	31867252	31867253	rs9267663	22566634	Benjamin DJ	2012-05-07	Proc Natl Acad Sci U S A	The genetic architecture of economic and political preferences.	Economic and political preferences (environmentalism)	9,617 European ancestry individuals	NA	6p21.33	EHMT2	rs9267663-T	NR	6E-6		0.29	[0.16-0.42] unit decrease	Illumina [628922]	N
828	chr6	31868764	31868765	rs114508013	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs114508013-G	0.9640625	5E-41	(CFB, 4129_72_1)	0.89926857	[0.77-1.03] unit increase	Illumina [> 1000000] (imputed)	N
828	chr6	31868764	31868765	rs114508013	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs114508013-G	0.9640625	4E-14	(FTMT, 8048_9_3)	0.51218635	[0.38-0.64] unit decrease	Illumina [> 1000000] (imputed)	N
828	chr6	31868764	31868765	rs114508013	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs114508013-G	0.9640625	3E-16	(DEFB119, 13455_10_3)	0.5455914	[0.42-0.68] unit decrease	Illumina [> 1000000] (imputed)	N
828	chr6	31868764	31868765	rs114508013	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs114508013-G	0.9640625	3E-11	(MICA, 2730_58_2)	0.45406085	[0.32-0.59] unit increase	Illumina [> 1000000] (imputed)	N
828	chr6	31868764	31868765	rs114508013	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs114508013-G	0.9640625	2E-129	(TNXB, 5698_60_3)	1.5771569	[1.46-1.7] unit increase	Illumina [> 1000000] (imputed)	N
828	chr6	31868764	31868765	rs114508013	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs114508013-G	0.9640625	1E-66	(C2, 3186_2_2)	1.1762669	[1.05-1.31] unit increase	Illumina [> 1000000] (imputed)	N
828	chr6	31868764	31868765	rs114508013	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs114508013-G	0.9640625	1E-60	(ISG15, 14148_2_3)	1.1050375	[0.98-1.23] unit increase	Illumina [> 1000000] (imputed)	N
828	chr6	31869121	31869122	rs45462992	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6p21.33		rs45462992-?	NR	4E-6		0.86602	[0.8-0.93]	NR [685523]	N
828	chr6	31869672	31869673	rs2844455	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	C2, ZBTB12	rs2844455-T	NR	2E-11		0.0245279	[0.017-0.032] unit increase	Affymetrix [319769] (imputed)	N
828	chr6	31869672	31869673	rs2844455	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	C2, ZBTB12	rs2844455-T	NR	5E-11		0.0238761	[0.017-0.031] unit increase	Affymetrix [319769] (imputed)	N
828	chr6	31869672	31869673	rs2844455	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	C2, ZBTB12	rs2844455-T	NR	2E-11		0.0246589	[0.017-0.032] unit increase	Affymetrix [321169] (imputed)	N
828	chr6	31870325	31870326	rs558702	24871463	Armstrong DL	2014-05-29	Genes Immun	GWAS identifies novel SLE susceptibility genes and explains the association of the HLA region.	Systemic lupus erythematosus	725 European ancestry cases, 2,438 European ancestry controls	NA	6p21.33	C2	rs558702-A	0.1	8E-21		2.276	[2.097-2.47]	Illumina [NR]	N
828	chr6	31870855	31870856	rs9267665	21764829	Png E	2011-07-15	Hum Mol Genet	A genome-wide association study of hepatitis B vaccine response in an Indonesian population reveals multiple independent risk variants in the HLA region.	Hepatitis B vaccine response	1,683 Indonesian ancestry individuals	1,931 Indonesian ancestry individuals	6p21.33	HLA	rs9267665-?	NR	1E-17		2.05	[1.64-2.57]	Illumina [455508]	N
828	chr6	31875711	31875712	rs586346	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Coffee consumption	335,909 European ancestry individuals	39,924 European ancestry individuals	6p21.33	C2	rs586346-T	0.3648	7E-10		0.0095	[0.0066-0.0124] unit increase	Affymetrix [~ 7740000] (imputed)	N
828	chr6	31876041	31876042	rs1313996	32339537	Roberts V	2020-04-24	J Invest Dermatol	Genome wide association study identifies genetic associations with perceived age.	Youthful appearance (self-reported)	423,992 European ancestry individuals	NA	6p21.33	C2	rs1313996-T	0.363603	4E-11		0.970678	NR	Affymetrix [~ 9600000] (imputed)	N
828	chr6	31876041	31876042	rs1313996	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p21.33	NR	rs1313996-?	NR	7E-17		0.1086	[0.083-0.134] unit increase	Illumina [at least 560000] (imputed)	N
828	chr6	31877457	31877458	rs116508221	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		C2	rs116508221-?	NR	8E-10	(male)	3.05228	[NR] unit decrease	Affymetrix [NR] (imputed)	N
828	chr6	31878432	31878433	rs519417	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p21.33	NR	rs519417-?	NR	1E-6		4.887	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
828	chr6	31878432	31878433	rs519417	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	6p21.33	ZBTB12, CFB	rs519417-G	NR	7E-11		0.207694	[0.15-0.27] unit increase	Illumina [at least 950000] (imputed)	N
828	chr6	31878432	31878433	rs519417	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p21.33	NR	rs519417-?	NR	3E-9		0.0882	[0.059-0.117] unit increase	Illumina [at least 560000] (imputed)	N
828	chr6	31878494	31878495	rs622871	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	6p21.33	NR	rs622871-?	NR	7E-18	(male)	0.32361	[0.25-0.4] unit decrease	Affymetrix [7794483] (imputed)	N
828	chr6	31878494	31878495	rs622871	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	6p21.33	NR	rs622871-?	NR	6E-19	(female)	0.23136	[0.18-0.28] unit decrease	Affymetrix [7794483] (imputed)	N
828	chr6	31878494	31878495	rs622871	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	6p21.33	NR	rs622871-?	NR	5E-32		0.28011	[0.23-0.33] unit decrease	Affymetrix [7794483] (imputed)	N
828	chr6	31878494	31878495	rs622871	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA	6p21.33	NR	rs622871-?	NR	2E-6		0.0384	[0.023-0.054] unit increase	Illumina [at least 560000] (imputed)	N
828	chr6	31878494	31878495	rs622871	28762467	Wadelius M	2017-08-01	Clin Pharmacol Ther	Sulfasalazine-Induced Agranulocytosis Is Associated With the Human Leukocyte Antigen Locus.	Sulfasalazine-induced agranulocytosis	36 European ancestry cases, 5,170 European ancestry untreated controls	NA	6p21.33	C2	rs622871-?	NR	7E-7		3.29	[2.06-5.27]	Illumina [9380034] (imputed)	N
828	chr6	31878494	31878495	rs622871	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.33	C2	rs622871-G	NR	4E-9	(women)	0.0303318	[0.02-0.04] unit decrease	Illumina [13520550] (imputed)	N
828	chr6	31878494	31878495	rs622871	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.33	C2	rs622871-G	NR	1E-10		0.0232703	[0.016-0.03] unit decrease	Illumina [13520550] (imputed)	N
828	chr6	31879157	31879158	rs3128761	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)(bidirectional)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.33		rs3128761-A	NR	4E-7				Affymetrix [7846216] (imputed)	N
828	chr6	31880807	31880808	rs561312719	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs561312719-C	0.067	6E-73	(Ubiquitin carboxyl-terminal hydrolase 25, USP25.9215.117.3)	0.94	[0.84-1.04] unit increase	Affymetrix [10572788] (imputed)	N
828	chr6	31881308	31881309	rs532086	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	C2	rs532086-C	NR	2E-14		0.0323897	[0.024-0.041] unit decrease	Affymetrix [323858] (imputed)	N
828	chr6	31881308	31881309	rs532086	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	C2	rs532086-C	NR	1E-12		0.0302037	[0.022-0.039] unit decrease	Affymetrix [127266] (imputed)	N
828	chr6	31881308	31881309	rs532086	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	C2	rs532086-C	NR	9E-10		0.0255355	[0.017-0.034] unit increase	Affymetrix [323123] (imputed)	N
828	chr6	31881308	31881309	rs532086	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	6p21.33	C2	rs532086-T	0.859	3E-6		0.0016	[0.00062-0.00258] unit increase	Affymetrix [NR] (imputed)	N
828	chr6	31881730	31881731	rs685031	30104761	Zhou W	2018-08-13	Nat Genet	Efficiently controlling for case-control imbalance and sample relatedness in large-scale genetic association studies.	Coronary artery disease	31,355 European ancestry cases, 377,103 European ancestry controls	NA	6p21.33	C2	rs685031-A	0.389	9E-9				Affymetrix [28000000] (imputed)	N
828	chr6	31881730	31881731	rs685031	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	6p21.33	C2	rs685031-A	0.646	5E-10		0.043	[0.029-0.057] unit increase	Affymetrix [7947838] (imputed)	N
828	chr6	31882023	31882024	rs2844452	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	C2	rs2844452-G	NR	6E-12		0.0195783	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
828	chr6	31882023	31882024	rs2844452	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	C2	rs2844452-G	NR	6E-11		0.0206929	[0.015-0.027] unit increase	Affymetrix [323858] (imputed)	N
828	chr6	31882023	31882024	rs2844452	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	C2	rs2844452-G	NR	4E-11		0.0187691	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
828	chr6	31882023	31882024	rs2844452	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	C2	rs2844452-G	NR	2E-9		0.0190129	[0.013-0.025] unit increase	Affymetrix [127266] (imputed)	N
828	chr6	31882140	31882140	rs111329206	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	C2	rs111329206-TGGGCGGATCATGA	NR	1E-15		0.0257236	[0.019-0.032] unit decrease	Affymetrix [323123] (imputed)	N
828	chr6	31883678	31883679	rs9267673	29185836	Chen MH	2017-11-29	Platelets	Exome-chip meta-analysis identifies association between variation in ANKRD26 and platelet aggregation.	Platelet aggregation	3,664 European ancestry individuals, 549 Old Order Amish (founder/genetic isolate) individuals	1,184 European ancestry individuals, 613 African American individuals	6p21.33	C2	rs9267673-T	0.114	7E-6	(collagen 1)	0.173	[0.097-0.249] unit decrease	Illumina [129094]	N
828	chr6	31883678	31883679	rs9267673	21105107	Clifford RJ	2010-12-01	Hepatology	Genetic variations at loci involved in the immune response are risk factors for hepatocellular carcinoma.	Hepatocellular carcinoma	180 Korean ancestry cases, 271 Korean ancestry controls	206 Korean ancestry cases, 416 East Asian ancestry controls,	6p21.33	C2	rs9267673-?	0.08	2E-6		1.97	[1.47-2.64]	Affymetrix [658897]	N
828	chr6	31883956	31883957	rs644045	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	6p21.33	C2	rs644045-A	0.3528	3E-13		0.0413	[0.03-0.052] unit decrease	Affymetrix [at least 7947838] (imputed)	N
828	chr6	31883956	31883957	rs644045	28881265	Sobalska-Kwapis M	2017-09-01	Eur J Obstet Gynecol Reprod Biol	New variants near RHOJ and C2, HLA-DRA region and susceptibility to endometriosis in the Polish population-The genome-wide association study.	Endometriosis	171 European ancestry cases, 2,934 European ancestry controls	NA	6p21.33	C2, LOC101929163, HLA-DRA	rs644045-T	0.2853	2E-8		1.955	[1.541-2.48]	Illumina [274400]	N
828	chr6	31884822	31884823	rs3130682	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	6p21.33	C2	rs3130682-T	NR	1E-16		0.0630215	[0.048-0.078] unit decrease	Illumina [13520550] (imputed)	N
828	chr6	31885929	31885930	rs3128759	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	153,512 East Asian ancestry individuals	NA	6p21.33		rs3128759-T	0.915106	7E-17		0.0465594	[0.036-0.058] unit increase	Illumina [13479135] (imputed)	N
828	chr6	31887258	31887259	rs115009784	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL15	5,365 Icelandic ancestry individuals	NA	6p21.33		rs115009784-A	0.04844	1E-13		0.324224	[0.24-0.41] unit decrease	Illumina [7506463] (imputed)	N
828	chr6	31888366	31888367	rs3130683	28714975	Nelson CP	2017-07-17	Nat Genet	Association analyses based on false discovery rate implicate new loci for coronary artery disease.	Coronary artery disease (myocardial infarction, percutaneous transluminal coronary angioplasty, coronary artery bypass grafting, angina or chromic ischemic heart disease)	18,467 European and unknown ancestry cases, 45,264 European and unknown ancestry controls	57,347 European and unknown ancestry cases, 219,521 European and unknown ancestry controls	6p21.33	C2	rs3130683-T	0.86	3E-8		1.08	[1.05-1.11]	Affymetrix [9149595] (imputed)	N
828	chr6	31892483	31892484	rs497309	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in diabetes	70,762 European ancestry individuals, 20,967 African American individuals	NA	6p21.33	C2	rs497309-A	0.902	5E-12		1.009	[0.72-1.3] unit increase	Affymetrix [NR] (imputed)	N
828	chr6	31892640	31892641	rs9267677	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	6p21.33	Intergenic	rs9267677-T	0.8962	7E-16	(MTAG)	0.0218	[0.017-0.027] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
828	chr6	31892640	31892641	rs9267677	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6p21.33		rs9267677-T	0.9029	4E-14		0.018	[0.013-0.023] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
828	chr6	31892640	31892641	rs9267677	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6p21.33	Intergenic	rs9267677-T	0.9029	8E-18	(MTAG)	0.0191	[0.015-0.023] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
828	chr6	31892640	31892641	rs9267677	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	6p21.33	Intergenic	rs9267677-T	0.9038	2E-9	(MTAG)	0.0233	[0.016-0.031] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
828	chr6	31893943	31893944	rs2734335	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	C2	rs2734335-A	NR	2E-8		0.0157901	[0.01-0.021] unit decrease	Affymetrix [321016] (imputed)	N
828	chr6	31894354	31894355	rs556679	33893285	Guindo-Martinez M	2021-04-23	Nat Commun	The impact of non-additive genetic associations on age-related complex diseases.	Age-related macular degeneration	3,685 European ancestry cases, 52,952 European ancestry controls	NA	6p21.33		rs556679-T	0.1113519	5E-21		0.66		Affymetrix [15377238] (imputed)	N
828	chr6	31895972	31895973	rs7746553	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	6p21.33	C2	rs7746553-C	0.848517	5E-8		0.0160902	[0.01-0.022] unit increase	NR [16516521] (imputed)	N
828	chr6	31897218	31897219	rs9283893	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	SKIV2L, C2, XXbac-BPG116M5.17, NELFE, MIR1236, DXO, STK19	rs9283893-A	0.0446339	1E-32	(Neutrophil collagenase)	1.199	[1.01-1.39] unit increase	Affymetrix [509946]	N
828	chr6	31900753	31900754	rs184265581	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	6p21.33	NR	rs184265581-C	0.012356999999999951	6E-27		0.132322	[0.11-0.16] unit increase	Affymetrix [16580851] (imputed)	N
828	chr6	31903803	31903804	rs9332739	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CFB	5,365 Icelandic ancestry individuals	NA	6p21.33		rs9332739-C	0.0495	8E-121		0.960939	[0.88-1.04] unit decrease	Illumina [7506463] (imputed)	N
828	chr6	31903803	31903804	rs9332739	22705344	Sobrin L	2012-06-15	Ophthalmology	Heritability and genome-wide association study to assess genetic differences between advanced age-related macular degeneration subtypes.	Age-related macular degeneration (geographic atrophy)	819 European ancestry geographic atrophy cases, 4,134 European ancestry controls	NA	6p21.33	C2	rs9332739-?	0.955	1E-6		2.63	[1.79-3.85]	Affymetrix, Illumina [6036699] (imputed)	N
828	chr6	31903803	31903804	rs9332739	22705344	Sobrin L	2012-06-15	Ophthalmology	Heritability and genome-wide association study to assess genetic differences between advanced age-related macular degeneration subtypes.	Age-related macular degeneration (choroidal neovascularisation)	1,775 European ancestry choroidal neovascularization cases, 4,134 European ancestry controls	4,515 European and unknown ancestry choroidal neovascularization cases, 15,240 European and unknown ancestry controls	6p21.33	C2	rs9332739-?	0.955	2E-8		2.08	[1.61-2.7]	Affymetrix, Illumina [6036699] (imputed)	N
828	chr6	31903803	31903804	rs9332739	21665990	Yu Y	2011-06-10	Hum Mol Genet	Common variants near FRK/COL10A1 and VEGFA are associated with advanced age-related macular degeneration.	Age-related macular degeneration	2,594 European ancestry cases, 4,134 European ancestry controls	5,640 European ancestry cases, 52,174 European ancestry controls	6p21.33	C2	rs9332739-?	0.96	2E-23		2.17	[NR]	Affymetrix [6036699] (imputed)	N
828	chr6	31905129	31905130	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ZNF276	5,363 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	6E-17		0.263299	[0.2-0.32] unit increase	Illumina [7506463] (imputed)	N
828	chr6	31905129	31905130	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ZAP70	5,357 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	2E-20		0.28156	[0.22-0.34] unit increase	Illumina [7506463] (imputed)	N
828	chr6	31905129	31905130	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein WIF1	5,349 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	4E-12		0.207313	[0.15-0.27] unit increase	Illumina [7506463] (imputed)	N
828	chr6	31905129	31905130	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein UTS2	5,348 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	2E-13		0.213721	[0.16-0.27] unit increase	Illumina [7506463] (imputed)	N
828	chr6	31905129	31905130	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TPM2	5,353 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	6E-19		0.271948	[0.21-0.33] unit increase	Illumina [7506463] (imputed)	N
828	chr6	31905129	31905130	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TMCC3	5,355 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	6E-19		0.272099	[0.21-0.33] unit increase	Illumina [7506463] (imputed)	N
828	chr6	31905129	31905130	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SYNCRIP	5,354 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	3E-16		0.244214	[0.19-0.3] unit increase	Illumina [7506463] (imputed)	N
828	chr6	31905129	31905130	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RPS10	5,348 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	8E-14		0.223731	[0.16-0.28] unit increase	Illumina [7506463] (imputed)	N
828	chr6	31905129	31905130	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RNF43	5,340 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	2E-12		0.20687	[0.15-0.26] unit increase	Illumina [7506463] (imputed)	N
828	chr6	31905129	31905130	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RGS8	5,356 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	5E-18		0.263545	[0.2-0.32] unit increase	Illumina [7506463] (imputed)	N
828	chr6	31905129	31905130	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RAD51	5,354 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	2E-17		0.254863	[0.2-0.31] unit increase	Illumina [7506463] (imputed)	N
828	chr6	31905129	31905130	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RAB5C	5,347 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	8E-15		0.22726	[0.17-0.28] unit increase	Illumina [7506463] (imputed)	N
828	chr6	31905129	31905130	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RAB17	5,352 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	2E-16		0.244122	[0.19-0.3] unit increase	Illumina [7506463] (imputed)	N
828	chr6	31905129	31905130	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PTPN1	5,343 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	2E-12		0.199884	[0.14-0.26] unit increase	Illumina [7506463] (imputed)	N
828	chr6	31905129	31905130	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein POLR1C	5,352 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	4E-15		0.236472	[0.18-0.3] unit increase	Illumina [7506463] (imputed)	N
828	chr6	31905129	31905130	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PIK3CG	5,349 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	3E-18		0.254662	[0.2-0.31] unit increase	Illumina [7506463] (imputed)	N
828	chr6	31905129	31905130	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PCDHB4	5,352 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	1E-14		0.230172	[0.17-0.29] unit increase	Illumina [7506463] (imputed)	N
828	chr6	31905129	31905130	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PCDHB14	5,352 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	9E-17		0.252266	[0.19-0.31] unit increase	Illumina [7506463] (imputed)	N
828	chr6	31905129	31905130	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NRXN3	5,346 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	3E-14		0.227034	[0.17-0.29] unit increase	Illumina [7506463] (imputed)	N
828	chr6	31905129	31905130	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NDUFB4	5,364 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	9E-14		0.235159	[0.17-0.3] unit increase	Illumina [7506463] (imputed)	N
828	chr6	31905129	31905130	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MST1R	5,341 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	7E-16		0.227077	[0.17-0.28] unit increase	Illumina [7506463] (imputed)	N
828	chr6	31905129	31905130	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MOCS3	5,351 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	8E-15		0.232526	[0.17-0.29] unit increase	Illumina [7506463] (imputed)	N
828	chr6	31905129	31905130	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein KLK6	5,348 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	1E-15		0.225461	[0.17-0.28] unit increase	Illumina [7506463] (imputed)	N
828	chr6	31905129	31905130	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein KLK12	5,359 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	1E-19		0.280976	[0.22-0.34] unit increase	Illumina [7506463] (imputed)	N
828	chr6	31905129	31905130	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL18R1	5,351 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	5E-12		0.21193	[0.15-0.27] unit increase	Illumina [7506463] (imputed)	N
828	chr6	31905129	31905130	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL10RA	5,353 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	1E-13		0.230011	[0.17-0.29] unit increase	Illumina [7506463] (imputed)	N
828	chr6	31905129	31905130	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IGFL3	5,350 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	5E-15		0.237003	[0.18-0.3] unit increase	Illumina [7506463] (imputed)	N
828	chr6	31905129	31905130	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GBP6	5,348 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	5E-12		0.206328	[0.15-0.26] unit increase	Illumina [7506463] (imputed)	N
828	chr6	31905129	31905130	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FRZB	5,350 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	5E-13		0.207917	[0.15-0.26] unit increase	Illumina [7506463] (imputed)	N
828	chr6	31905129	31905130	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FCER1A	5,348 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	1E-19		0.272221	[0.21-0.33] unit increase	Illumina [7506463] (imputed)	N
828	chr6	31905129	31905130	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DSG1	5,349 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	4E-16		0.242273	[0.18-0.3] unit increase	Illumina [7506463] (imputed)	N
828	chr6	31905129	31905130	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DCUN1D5	5,344 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	2E-13		0.212735	[0.16-0.27] unit increase	Illumina [7506463] (imputed)	N
828	chr6	31905129	31905130	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CRABP1	5,340 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	4E-13		0.209239	[0.15-0.27] unit increase	Illumina [7506463] (imputed)	N
828	chr6	31905129	31905130	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CLEC12B	5,357 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	4E-18		0.267882	[0.21-0.33] unit increase	Illumina [7506463] (imputed)	N
828	chr6	31905129	31905130	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CDK5;CDK5R1	5,339 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	2E-15		0.225529	[0.17-0.28] unit increase	Illumina [7506463] (imputed)	N
828	chr6	31905129	31905130	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CCL1	5,354 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	1E-15		0.242251	[0.18-0.3] unit increase	Illumina [7506463] (imputed)	N
828	chr6	31905129	31905130	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CA4	5,356 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	2E-13		0.225651	[0.17-0.29] unit increase	Illumina [7506463] (imputed)	N
828	chr6	31905129	31905130	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C2orf40	5,353 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	3E-12		0.217148	[0.16-0.28] unit increase	Illumina [7506463] (imputed)	N
828	chr6	31905129	31905130	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein BCL2L10	5,355 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	9E-14		0.231319	[0.17-0.29] unit increase	Illumina [7506463] (imputed)	N
828	chr6	31905129	31905130	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein BCL2L1	5,350 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	1E-17		0.257737	[0.2-0.32] unit increase	Illumina [7506463] (imputed)	N
828	chr6	31905129	31905130	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein AZGP1	5,362 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	1E-19		0.281057	[0.22-0.34] unit increase	Illumina [7506463] (imputed)	N
828	chr6	31905129	31905130	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ANXA10	5,345 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	6E-13		0.218401	[0.16-0.28] unit increase	Illumina [7506463] (imputed)	N
828	chr6	31905129	31905130	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein AKT3	5,346 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	2E-14		0.217044	[0.16-0.27] unit increase	Illumina [7506463] (imputed)	N
828	chr6	31905129	31905130	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein AHSA1	5,351 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	2E-15		0.242628	[0.18-0.3] unit increase	Illumina [7506463] (imputed)	N
828	chr6	31905129	31905130	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ADGRE5	5,359 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	3E-18		0.271861	[0.21-0.33] unit increase	Illumina [7506463] (imputed)	N
828	chr6	31905129	31905130	rs1042663	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs1042663-A	0.095	5E-18	(ER membrane protein complex subunit 4, EMC4.13516.46.3)	0.36	[0.28-0.44] unit decrease	Affymetrix [10572788] (imputed)	N
828	chr6	31906009	31906010	rs9380272	20385819	Chen W	2010-04-12	Proc Natl Acad Sci U S A	Genetic variants near TIMP3 and high-density lipoprotein-associated loci influence susceptibility to age-related macular degeneration.	Age-related macular degeneration	2,157 European ancestry cases, 1,150 European ancestry controls	7,892 European ancestry cases, 5,998 European ancestry controls, 678 Japanese ancestry cases, 336 Japanese ancestry controls	6p21.33	CFB, C2	rs9380272-A	0.012	2E-8		4.31	[2.76-6.87]	Illumina [~ 2500000] (imputed)	N
828	chr6	31906827	31906828	rs78593564	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PSMD11	5,350 Icelandic ancestry individuals	NA	6p21.33		rs78593564-A	0.05083	8E-12		0.281426	[0.2-0.36] unit decrease	Illumina [7506463] (imputed)	N
828	chr6	31906827	31906828	rs78593564	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL36A	5,364 Icelandic ancestry individuals	NA	6p21.33		rs78593564-A	0.05083	2E-64		0.72184	[0.64-0.81] unit decrease	Illumina [7506463] (imputed)	N
828	chr6	31906827	31906828	rs78593564	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL21	5,363 Icelandic ancestry individuals	NA	6p21.33		rs78593564-A	0.05083	3E-50		0.636403	[0.55-0.72] unit decrease	Illumina [7506463] (imputed)	N
828	chr6	31906827	31906828	rs78593564	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	6p21.33	HLA region	rs78593564-?	NR	3E-8	(EA)			Affymetrix, Illumina [10537485] (imputed)	N
828	chr6	31906827	31906828	rs78593564	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	6p21.33	HLA region	rs78593564-?	NR	1E-8				Affymetrix, Illumina [10537485] (imputed)	N
828	chr6	31907836	31907837	rs2293751	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	C2, CFB	rs2293751-A	NR	2E-15		0.0227001	[0.017-0.028] unit increase	Affymetrix [321169] (imputed)	N
828	chr6	31907836	31907837	rs2293751	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.33	C2, C2-AS1, CFB, DXO, EHMT2, MIR1236, NELFE, NEU1, SKIV2L, SLC44A4, STK19, ZBTB12	rs2293751-A		3E-8		1.06	[1.04-1.08]	Affymetrix, Illumina [NR]	N
828	chr6	31908760	31908761	rs497239	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ZAP70	5,359 Icelandic ancestry individuals	NA	6p21.33		rs497239-C	0.09998	3E-12		0.217124	[0.16-0.28] unit increase	Illumina [7506463] (imputed)	N
828	chr6	31908760	31908761	rs497239	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein KLRC3	5,354 Icelandic ancestry individuals	NA	6p21.33		rs497239-C	0.09998	1E-32		0.360834	[0.3-0.42] unit increase	Illumina [7506463] (imputed)	N
828	chr6	31908760	31908761	rs497239	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ENTPD3	5,332 Icelandic ancestry individuals	NA	6p21.33		rs497239-C	0.09998	3E-13		0.205425	[0.15-0.26] unit increase	Illumina [7506463] (imputed)	N
828	chr6	31910937	31910938	rs547154	32843070	Winkler TW	2020-08-26	BMC Med Genomics	Genome-wide association meta-analysis for early age-related macular degeneration highlights novel loci and insights for advanced disease.	Early age-related macular degeneration	14,034 European ancestry cases, 91,214 European ancestry controls	NA	6p21.33	C2	rs547154-G	0.91	1E-18		1.24	[1.19-1.29]	Affymetrix, Illumina [11702853] (imputed)	N
828	chr6	31914023	31914024	rs4151667	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	CFB	rs4151667-A	0.042	6E-53	(Complement factor B, CFB.4129.72.1)	0.91	[0.79-1.03] unit decrease	Affymetrix [10572788] (imputed)	N
828	chr6	31914178	31914179	rs12614	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CFB	5,365 Icelandic ancestry individuals	NA	6p21.33		rs12614-T	0.07594	2E-11		0.239951	[0.17-0.31] unit decrease	Illumina [7506463] (imputed)	N
828	chr6	31914178	31914179	rs12614	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	CFB	rs12614-T	0.087	7E-25	(Gremlin-1, GREM1.4449.67.3)	0.44	[0.36-0.52] unit increase	Affymetrix [10572788] (imputed)	N
828	chr6	31914178	31914179	rs12614	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	CFB	rs12614-T	0.087	1E-283	(Neutrophil collagenase, MMP8.2954.56.2)	1.33	[1.25-1.41] unit increase	Affymetrix [10572788] (imputed)	N
828	chr6	31914178	31914179	rs12614	25802187	Jiang DK	2015-04-28	Hepatology	Genetic variants in five novel loci including CFB and CD40 predispose to chronic hepatitis B.	Chronic hepatitis B infection	2,514 Chinese ancestry cases, 1,130 Chinese ancestry controls	6,600 Chinese ancestry cases, 8,127 Chinese ancestry controls	6p21.33	CFB	rs12614-T	0.92	1E-34		1.89	[1.69-2.08]	Illumina [3680900] (imputed)	N
828	chr6	31914179	31914180	rs641153	32492067	Ruffieux H	2020-06-03	PLoS Comput Biol	A fully joint Bayesian quantitative trait locus mapping of human protein abundance in plasma.	Protein quantitative trait loci	394 European ancestry individuals	548 European ancestry individuals	6p21.33	NR	rs641153-?	NR	4E-12	(Factor B)			Illumina [~ 4000000] (imputed)	N
828	chr6	31914179	31914180	rs641153	22705344	Sobrin L	2012-06-15	Ophthalmology	Heritability and genome-wide association study to assess genetic differences between advanced age-related macular degeneration subtypes.	Age-related macular degeneration (geographic atrophy)	819 European ancestry geographic atrophy cases, 4,134 European ancestry controls	NA	6p21.33	CFB	rs641153-?	0.899	2E-9		2.13	[1.69-2.7]	Affymetrix, Illumina [6036699] (imputed)	N
828	chr6	31914179	31914180	rs641153	22705344	Sobrin L	2012-06-15	Ophthalmology	Heritability and genome-wide association study to assess genetic differences between advanced age-related macular degeneration subtypes.	Age-related macular degeneration (choroidal neovascularisation)	1,775 European ancestry choroidal neovascularization cases, 4,134 European ancestry controls	4,515 European and unknown ancestry choroidal neovascularization cases, 15,240 European and unknown ancestry controls	6p21.33	CFB	rs641153-?	0.899	1E-17		2.22	[1.85-2.63]	Affymetrix, Illumina [6036699] (imputed)	N
828	chr6	31914179	31914180	rs641153	21665990	Yu Y	2011-06-10	Hum Mol Genet	Common variants near FRK/COL10A1 and VEGFA are associated with advanced age-related macular degeneration.	Age-related macular degeneration	2,594 European ancestry cases, 4,134 European ancestry controls	5,640 European ancestry cases, 52,174 European ancestry controls	6p21.33	CFB	rs641153-?	0.90	6E-31		1.85	[NR]	Affymetrix [6036699] (imputed)	N
828	chr6	31914179	31914180	rs641153	20385826	Neale BM	2010-04-12	Proc Natl Acad Sci U S A	Genome-wide association study of advanced age-related macular degeneration identifies a role of the hepatic lipase gene (LIPC).	Age-related macular degeneration	979 cases, 1,709 controls	868 European ancestry cases, 410 European ancestry controls, 4,921 cases, 3,824 controls	6p21.33	CFB, C2	rs641153-?	NR	2E-20				Affymetrix [632932]	N
828	chr6	31914934	31914935	rs1048709	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CFB	5,365 Icelandic ancestry individuals	NA	6p21.33		rs1048709-A	0.2856	2E-16		0.172241	[0.13-0.21] unit decrease	Illumina [7506463] (imputed)	N
828	chr6	31914934	31914935	rs1048709	31375628	Tengvall K	2019-08-02	Proc Natl Acad Sci U S A	Molecular mimicry between Anoctamin 2 and Epstein-Barr virus nuclear antigen 1 associates with multiple sclerosis risk.	Anti-anoctamin 2 antibody levels	11,936 European ancestry individuals	NA	6p21.33	NR	rs1048709-A	NR	3E-7		0.054	[0.029-0.079] unit increase	Illumina [615763]	N
828	chr6	31915143	31915144	rs4151669	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	DXO, C2, CFB, EHMT2, SLC44A4, EHMT2-AS1, ZBTB12, XXbac-BPG116M5.17, C2-AS1, NELFE, MIR1236, STK19, C4A	rs4151669-A	0.04112337	6E-28	(EA, Complement factor B)	1.17	[0.97-1.37] unit decrease	Affymetrix [509946]	N
828	chr6	31916399	31916400	rs537160	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p21.33	NR	rs537160-G	0.6394	3E-7		0.0063	[0.0039-0.0087] unit increase	NR [7666894] (imputed)	N
828	chr6	31916399	31916400	rs537160	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.33	XXbac-BPG116M5.17, CFB	rs537160-A	0.3352	9E-11		0.0478	[0.033-0.062] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
828	chr6	31916706	31916707	rs45600936	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	6p21.33	CFB	rs45600936-T	0.00839800000000002	4E-10		0.07604781	[0.052-0.1] unit decrease	Affymetrix [93095623] (imputed)	N
828	chr6	31916950	31916951	rs541862	29234017	Carayol J	2017-12-12	Nat Commun	Protein quantitative trait locus study in obesity during weight-loss identifies a leptin regulator.	Protein levels in obesity	494 European ancestry individuals	NA	6p21.33	NR	rs541862-?	NR	3E-11	(Factor B)	0.15	[0.1-0.2] unit increase	Illumina [4020654] (imputed)	N
828	chr6	31916950	31916951	rs541862	22694956	Cipriani V	2012-06-13	Hum Mol Genet	Genome-wide association study of age-related macular degeneration identifies associated variants in the TNXB-FKBPL-NOTCH4 region of chromosome 6p21.3.	Age-related macular degeneration	893 European ancestry cases, 2,199 European ancestry controls	1,411 European ancestry cases, 1,431 European ancestry controls	6p21.33	CFB	rs541862-T	0.99	9E-17		1.89	[1.61-2.17]	Illumina [2272849] (imputed)	N
828	chr6	31917539	31917540	rs4151657	24837172	Juyal G	2014-05-16	Gut	Genome-wide association scan in north Indians reveals three novel HLA-independent risk loci for ulcerative colitis.	Ulcerative colitis	603 North Indian ancestry cases, 622 North Indian ancestry controls	733 North Indian ancestry cases, 1,148 North Indian ancestry controls	6p21.33	CFB, BAT2, MSH5, HSPA1L, SLC44A4	rs4151657-G	0.29	5E-14		1.54	[1.38-1.73]	Illumina [480391]	N
828	chr6	31918463	31918464	rs4151659	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	CFB	rs4151659-G	0.013	2E-18	(ER membrane protein complex subunit 4, EMC4.13516.46.3)	0.94	[0.72-1.16] unit decrease	Affymetrix [10572788] (imputed)	N
828	chr6	31918859	31918860	rs1270942	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	2,018 European ancestry cases, 6,925 European ancestry controls	6p21.33	MHC class III	rs1270942-C		2E-165		2.28	[2.15-2.42]	Illumina [644674]	N
828	chr6	31918859	31918860	rs1270942	25936594	Tomer Y	2015-04-27	J Autoimmun	Genome wide identification of new genes and pathways in patients with both autoimmune thyroiditis and type 1 diabetes.	Type 1 diabetes and autoimmune thyroid diseases	346 European ancestry cases, 727 European ancestry controls	185 European ancestry cases, 340 European ancestry controls	6p21.33	BAT2, HSPA1L, CFB, TNXB, NOTCH4	rs1270942-C	NR	5E-25		3.0494		Illumina [514008]	N
828	chr6	31918902	31918903	rs4151671	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		AL645922.1	rs4151671-?	NR	2E-8	(male)	2.99493	[NR] unit decrease	Affymetrix [NR] (imputed)	N
828	chr6	31918902	31918903	rs4151671	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA		NR	rs4151671-C	0.94890625	7E-10	(IFNAR1, 6055_53_3)	0.3487593	[0.24-0.46] unit increase	Illumina [> 1000000] (imputed)	N
828	chr6	31918902	31918903	rs4151671	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA		NR	rs4151671-C	0.94890625	6E-23	(FTMT, 8048_9_3)	0.5590734	[0.45-0.67] unit decrease	Illumina [> 1000000] (imputed)	N
828	chr6	31918902	31918903	rs4151671	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA		NR	rs4151671-C	0.94890625	2E-49	(ISG15, 14148_2_3)	0.84025466	[0.73-0.95] unit increase	Illumina [> 1000000] (imputed)	N
828	chr6	31918902	31918903	rs4151671	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA		NR	rs4151671-C	0.94890625	2E-23	(DEFB119, 13455_10_3)	0.5583053	[0.45-0.67] unit decrease	Illumina [> 1000000] (imputed)	N
828	chr6	31918902	31918903	rs4151671	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA		NR	rs4151671-C	0.94890625	2E-14	(MICA, 2730_58_2)	0.4376745	[0.33-0.55] unit increase	Illumina [> 1000000] (imputed)	N
828	chr6	31918902	31918903	rs4151671	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA		NR	rs4151671-C	0.94890625	2E-126	(TNXB, 5698_60_3)	1.3120593	[1.21-1.41] unit increase	Illumina [> 1000000] (imputed)	N
828	chr6	31918902	31918903	rs4151671	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA		NR	rs4151671-C	0.94890625	1E-9	(IL15, 10795_32_3)	0.34537017	[0.23-0.46] unit increase	Illumina [> 1000000] (imputed)	N
828	chr6	31918902	31918903	rs4151671	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA		NR	rs4151671-C	0.94890625	1E-66	(CFB, 4129_72_1)	0.96344995	[0.86-1.07] unit increase	Illumina [> 1000000] (imputed)	N
828	chr6	31918902	31918903	rs4151671	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA		NR	rs4151671-C	0.94890625	1E-41	(C2, 3186_2_2)	0.78192717	[0.67-0.89] unit increase	Illumina [> 1000000] (imputed)	N
828	chr6	31919577	31919578	rs2072633	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	CFB	rs2072633-A	NR	2E-10		0.0180815	[0.013-0.024] unit decrease	Affymetrix [321169] (imputed)	N
828	chr6	31919577	31919578	rs2072633	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	6p21.33	C2, CFB, MIR1236, NELFE, SKIV2L	rs2072633-A	0.443	6E-13		0.0411	[0.03-0.052] unit decrease	NR [8041861] (imputed)	N
828	chr6	31919829	31919830	rs4151672	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		CFB	rs4151672-?	NR	2E-8	(male)	2.99497	[NR] unit decrease	Affymetrix [NR] (imputed)	N
828	chr6	31919916	31919917	rs522162	23577725	Naj AC	2013-05-01	Ann Hum Genet	Genetic factors in nonsmokers with age-related macular degeneration revealed through genome-wide gene-environment interaction analysis.	Age-related macular degeneration (extreme sampling)	720 European ancestry grade 5 cases, 513 European ancestry grade 1 controls	70 European ancestry grade 5 cases, 73 European ancestry grade 1 controls	6p21.33	RDBP, CFB, DKFZp779M0311	rs522162-?	0.93	3E-7		2.38	[1.69-3.33]	Affymetrix [2543887] (imputed)	N
828	chr6	31919916	31919917	rs522162	23577725	Naj AC	2013-05-01	Ann Hum Genet	Genetic factors in nonsmokers with age-related macular degeneration revealed through genome-wide gene-environment interaction analysis.	Age-related macular degeneration	1,207 European ancestry cases, 686 European ancestry controls	122 European ancestry cases, 86 European ancestry controls	6p21.33	RDBP, CFB, ATF6B, STK19	rs522162-?	0.93	2E-10		2.33	[1.82-3.03]	Affymetrix [2543887] (imputed)	N
828	chr6	31920686	31920687	rs550513	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	SKIV2L, CFB, NELFE, C2, C2-AS1, XXbac-BPG116M5.17, MIR1236	rs550513-T	0.07981928	1E-19	(Complement factor B)	0.702	[0.55-0.85] unit increase	Affymetrix [509946]	N
828	chr6	31921065	31921066	rs4151665	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs4151665-C	0.06	7E-15	(Beta-defensin 119, DEFB119.13455.10.3)	0.4	[0.3-0.5] unit increase	Affymetrix [10572788] (imputed)	N
828	chr6	31921474	31921475	rs2072632	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SPAG11B	5,366 Icelandic ancestry individuals	NA	6p21.33		rs2072632-A	0.2866	3E-45		0.290078	[0.25-0.33] unit decrease	Illumina [7506463] (imputed)	N
828	chr6	31922253	31922254	rs630379	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	NELFE	rs630379-A	NR	1E-14		0.0231756	[0.017-0.029] unit decrease	Affymetrix [319769] (imputed)	N
828	chr6	31922253	31922254	rs630379	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	NELFE	rs630379-A	NR	2E-13		0.0221378	[0.016-0.028] unit decrease	Affymetrix [319769] (imputed)	N
828	chr6	31922253	31922254	rs630379	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	NELFE	rs630379-A	NR	2E-23		0.0325922	[0.026-0.039] unit increase	Affymetrix [323123] (imputed)	N
828	chr6	31922253	31922254	rs630379	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	NELFE	rs630379-A	NR	5E-17		0.0254771	[0.02-0.031] unit decrease	Affymetrix [321169] (imputed)	N
828	chr6	31923713	31923713	rs35917342	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs35917342-AT	0.101	1E-203	(Neutrophil collagenase, MMP8.2954.56.2)	1.18	[1.1-1.26] unit increase	Affymetrix [10572788] (imputed)	N
828	chr6	31924326	31924327	rs9501161	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs9501161-A	0.086	1E-11	(Complement factor B, CFB.4129.72.1)	0.29	[0.21-0.37] unit decrease	Affymetrix [10572788] (imputed)	N
828	chr6	31925847	31925848	rs80082277	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	6p21.33	SKIV2L, NELFE, MIR1236	rs80082277-C	0.02	3E-8	(EA)	0.0536	[0.035-0.073] unit decrease	Affymetrix, Illumina [10537485] (imputed)	N
828	chr6	31927341	31927342	rs440454	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	6p21.33		rs440454-?	NR	5E-9		0.0056767	[0.0038-0.0076] unit decrease	NR [NR]	N
828	chr6	31927341	31927342	rs440454	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p21.33	SKIV2L	rs440454-A	NR	2E-10		0.0210807	[0.015-0.028] unit decrease	Affymetrix [323858] (imputed)	N
828	chr6	31928690	31928691	rs2280774	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	CYP21A2, NELFE, DXO, TNXB, C2, C2-AS1, XXbac-BPG116M5.17, CFB, MIR1236, SKIV2L, STK19, C4A, C4B, C4B-AS1, RNA5SP206	rs2280774-A	0.3705942	8E-29	(Complement C4b)	0.5048	[0.42-0.59] unit decrease	Affymetrix [509946]	N
828	chr6	31928690	31928691	rs2280774	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	CYP21A2, NELFE, DXO, TNXB, C2, C2-AS1, XXbac-BPG116M5.17, CFB, MIR1236, SKIV2L, STK19, C4A, C4B, C4B-AS1, RNA5SP206	rs2280774-A	0.3705942	8E-12	(EA, gp41 C34 peptide, HIV)	0.3064	[0.22-0.39] unit decrease	Affymetrix [509946]	N
828	chr6	31928798	31928799	rs419788	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	SKIV2L	rs419788-T	NR	3E-19		0.0298384	[0.023-0.036] unit decrease	Affymetrix [323858] (imputed)	N
828	chr6	31928798	31928799	rs419788	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	SKIV2L	rs419788-T	NR	1E-16		0.0274934	[0.021-0.034] unit decrease	Affymetrix [127266] (imputed)	N
828	chr6	31929807	31929808	rs35664695	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p21.33	NR	rs35664695-?	NR	6E-17		0.1764	[0.14-0.22] unit increase	Illumina [at least 560000] (imputed)	N
828	chr6	31930350	31930351	rs2734331	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	6p21.33	SKIV2L	rs2734331-A	0.97	7E-13	(X-11470)	0.073	[0.053-0.093] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
828	chr6	31930440	31930441	rs592229	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	6p21.33		rs592229-G	0.486	2E-28		0.12	[0.1-0.14] % increase	Affymetrix [NR] (imputed)	N
828	chr6	31930440	31930441	rs592229	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	SKIV2L	rs592229-G	NR	3E-9		0.0166622	[0.011-0.022] unit decrease	Affymetrix [319769] (imputed)	N
828	chr6	31930440	31930441	rs592229	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	SKIV2L	rs592229-G	NR	6E-18		0.0269889	[0.021-0.033] unit decrease	Affymetrix [323858] (imputed)	N
828	chr6	31930440	31930441	rs592229	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	SKIV2L	rs592229-G	NR	2E-8		0.0157493	[0.01-0.021] unit decrease	Affymetrix [319769] (imputed)	N
828	chr6	31930440	31930441	rs592229	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	SKIV2L	rs592229-G	NR	1E-15		0.0250227	[0.019-0.031] unit decrease	Affymetrix [127266] (imputed)	N
828	chr6	31930440	31930441	rs592229	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	SKIV2L	rs592229-G	NR	5E-15		0.023966	[0.018-0.03] unit increase	Affymetrix [323123] (imputed)	N
828	chr6	31930440	31930441	rs592229	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p21.33	SKIV2L	rs592229-G	NR	5E-12		0.0214232	[0.015-0.027] unit decrease	Affymetrix [323858] (imputed)	N
828	chr6	31930440	31930441	rs592229	25281659	van der Valk RJ	2014-10-03	Hum Mol Genet	A novel common variant in DCST2 is associated with length in early life and height in adulthood.	Infant length	28,238 European ancestry individuals	NA	6p21.33	HLA	rs592229-G	0.43	2E-8		0.048	[0.030-0.066] unit increase	Affymetrix, Illumina [2193675] (imputed)	N
828	chr6	31930440	31930441	rs592229	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs592229-G	0.370399655280899	4E-6	(IGP42)	0.1536	[0.088-0.219] unit increase	Illumina [~ 2500000] (imputed)	N
828	chr6	31930440	31930441	rs592229	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs592229-G	0.370283129554656	9E-6	(IGP2)	0.1479	[0.083-0.213] unit increase	Illumina [~ 2500000] (imputed)	N
828	chr6	31930461	31930462	rs429608	23455636	Fritsche LG	2013-03-03	Nat Genet	Seven new loci associated with age-related macular degeneration.	Age-related macular degeneration	6,713 European ancestry cases, 48,402 European ancestry contols, 110 Southern Indian ancestry cases, 119 Southern Indian ancestry controls, 827 Japanese ancestry cases, 3,323 Japanese ancestry controls	9,070 European ancestry cases, 7,683 European ancestry contols, 461 East Asian ancestry cases, 547 East Asian ancestry controls	6p21.33	CFB, C2	rs429608-G	0.86	4E-89		1.74	[1.68-1.79]	Affymetrix, Illumina [2442884] (imputed)	N
828	chr6	31930461	31930462	rs429608	20861866	Kopplin LJ	2010-09-23	Genes Immun	Genome-wide association identifies SKIV2L and MYRIP as protective factors for age-related macular degeneration.	Age-related macular degeneration	684 European ancestry cases, 188 European ancestry controls	1,896 European ancestry cases, 1,866 European ancestry controls	6p21.33	BF, SKIV2L	rs429608-?	NR	5E-15		1.85	[NR]	Affymetrix [> 361556] (imputed)	N
828	chr6	31930461	31930462	rs429608	20385819	Chen W	2010-04-12	Proc Natl Acad Sci U S A	Genetic variants near TIMP3 and high-density lipoprotein-associated loci influence susceptibility to age-related macular degeneration.	Age-related macular degeneration	2,157 European ancestry cases, 1,150 European ancestry controls	7,892 European ancestry cases, 5,998 European ancestry controls, 678 Japanese ancestry cases, 336 Japanese ancestry controls	6p21.33	CFB, C2	rs429608-G	0.842	3E-21		2.16	[1.84-2.53]	Illumina [~ 2500000] (imputed)	N
828	chr6	31931136	31931137	rs401775	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p21.33	NR	rs401775-?	NR	3E-12		0.1102	[0.079-0.141] unit increase	Illumina [at least 560000] (imputed)	N
828	chr6	31933160	31933161	rs406936	23577725	Naj AC	2013-05-01	Ann Hum Genet	Genetic factors in nonsmokers with age-related macular degeneration revealed through genome-wide gene-environment interaction analysis.	Age-related macular degeneration	1,207 European ancestry cases, 686 European ancestry controls	122 European ancestry cases, 86 European ancestry controls	6p21.33	SKIV2L	rs406936-?	0.10	7E-7		1.75	[1.41-2.17]	Affymetrix [2543887] (imputed)	N
828	chr6	31933517	31933518	rs492899	31241743	Jaeger M	2019-04-24	J Infect Dis	A Genome-Wide Functional Genomics Approach Identifies Susceptibility Pathways to Fungal Bloodstream Infection in Humans.	Candidemia	161 European ancestry cases, 152 European ancestry controls	NA	6p21.33	NR	rs492899-?	NR	2E-6		5.5555553	[NR]	Illumina [5326313] (imputed)	N
828	chr6	31933517	31933518	rs492899	30854688	Wang C	2019-03-10	Hepatology	Genome Wide Association Studies of Specific Antinuclear Autoantibody Sub-phenotypes in Primary Biliary Cholangitis.	Anti-sp100 seropositivity in primary biliary cholangitis	211 Han Chinese ancestry cases, 711 Han Chinese ancestry controls	234 Han Chinese ancestry cases, 1,018 Han Chinese ancestry controls	6p21.33	NR	rs492899-G	0.193	3E-22		2.9	[2.34-3.66]	Illumina [794531]	N
828	chr6	31933976	31933977	rs9296004	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TYK2	5,361 Icelandic ancestry individuals	NA	6p21.33		rs9296004-C	0.09963	6E-11		0.203156	[0.14-0.26] unit increase	Illumina [7506463] (imputed)	N
828	chr6	31933976	31933977	rs9296004	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LDLRAD4	5,362 Icelandic ancestry individuals	NA	6p21.33		rs9296004-C	0.09963	7E-11		0.200339	[0.14-0.26] unit increase	Illumina [7506463] (imputed)	N
828	chr6	31933976	31933977	rs9296004	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ISG15	5,349 Icelandic ancestry individuals	NA	6p21.33		rs9296004-C	0.09963	8E-62		0.488305	[0.43-0.55] unit decrease	Illumina [7506463] (imputed)	N
828	chr6	31933976	31933977	rs9296004	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL18RAP	5,360 Icelandic ancestry individuals	NA	6p21.33		rs9296004-C	0.09963	6E-30		0.350014	[0.29-0.41] unit decrease	Illumina [7506463] (imputed)	N
828	chr6	31933976	31933977	rs9296004	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FTMT	5,365 Icelandic ancestry individuals	NA	6p21.33		rs9296004-C	0.09963	4E-81		0.580682	[0.52-0.64] unit increase	Illumina [7506463] (imputed)	N
828	chr6	31933976	31933977	rs9296004	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DEFB119	5,366 Icelandic ancestry individuals	NA	6p21.33		rs9296004-C	0.09963	3E-94		0.623132	[0.56-0.68] unit increase	Illumina [7506463] (imputed)	N
828	chr6	31933976	31933977	rs9296004	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C4A;C4B	5,353 Icelandic ancestry individuals	NA	6p21.33		rs9296004-C	0.09963	1E-39		0.393378	[0.33-0.45] unit increase	Illumina [7506463] (imputed)	N
828	chr6	31933976	31933977	rs9296004	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	SKIV2L	rs9296004-C	0.082	3E-40	(Beta-defensin 119, DEFB119.13455.10.3)	0.61	[0.51-0.71] unit increase	Affymetrix [10572788] (imputed)	N
828	chr6	31935566	31935567	rs3911893	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DEFB119	5,366 Icelandic ancestry individuals	NA	6p21.33		rs3911893-A	0.0572	2E-35		0.507255	[0.43-0.59] unit increase	Illumina [7506463] (imputed)	N
828	chr6	31935749	31935750	rs106287	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	6p21.33	SKIV2L	rs106287-A	0.0424830000000001	8E-12		0.03863092	[0.028-0.05] unit decrease	Affymetrix [93095623] (imputed)	N
828	chr6	31936056	31936057	rs34241101	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6p21.33	NR	rs34241101-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
828	chr6	31936056	31936057	rs34241101	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Strep throat	52,487 European ancestry cases, 22,017 European ancestry controls	NA	6p21.33	NR	rs34241101-?	NR	2E-7		0.0548	[0.034-0.076] unit increase	Illumina [at least 560000] (imputed)	N
828	chr6	31936667	31936668	rs410851	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	6p21.33		rs410851-C	NR	1E-16		0.0169	[0.013-0.021] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
828	chr6	31936667	31936668	rs410851	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	6p21.33		rs410851-C	NR	3E-21		0.02	[0.016-0.024] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
828	chr6	31936667	31936668	rs410851	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	SKIV2L	rs410851-T	NR	5E-12		0.0206765	[0.015-0.027] unit increase	Affymetrix [321016] (imputed)	N
828	chr6	31938119	31938120	rs45531831	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	TNXB	rs45531831-T	0.023	3E-116	(Tenascin-X, TNXB.5698.60.3)	1.75	[1.59-1.91] unit decrease	Affymetrix [10572788] (imputed)	N
828	chr6	31939344	31939345	rs41267118	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL18RAP	5,360 Icelandic ancestry individuals	NA	6p21.33		rs41267118-A	0.04712	9E-9		0.259513	[0.17-0.35] unit decrease	Illumina [7506463] (imputed)	N
828	chr6	31939523	31939524	rs115085021	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CFB	5,365 Icelandic ancestry individuals	NA	6p21.33		rs115085021-C	0.03863	6E-25		0.502999	[0.41-0.6] unit increase	Illumina [7506463] (imputed)	N
828	chr6	31940217	31940218	rs75393409	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs75393409-?		2E-7		1.06	[1.04-1.09]	Illumina [7645193] (imputed)	N
828	chr6	31940217	31940218	rs75393409	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs75393409-?		4E-8		1.78	[1.45-2.18]	Illumina [7645193] (imputed)	N
828	chr6	31940896	31940897	rs389884	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FTMT	5,365 Icelandic ancestry individuals	NA	6p21.33		rs389884-G	0.08177	6E-137		0.828667	[0.76-0.89] unit decrease	Illumina [7506463] (imputed)	N
828	chr6	31940896	31940897	rs389884	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p21.33	STK19	rs389884-G	0.342	1E-32				Illumina [118177]	N
828	chr6	31940896	31940897	rs389884	23263863	Li J	2012-12-20	Hum Mol Genet	GWAS of blood cell traits identifies novel associated loci and epistatic interactions in Caucasian and African-American children.	Hematology traits	7,943 African American children, 6,234 European ancestry children	NA	6p21.33	CFB, STK19, ZBTB12	rs389884-C	0.0953	2E-8	(EA, WBC)	0.0254	[0.017-0.034] unit decrease	Illumina [544917]	N
828	chr6	31940896	31940897	rs389884	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.33	intergenic	rs389884-C	0.1148	8E-66		3.65	[NR]	Illumina [242824]	N
828	chr6	31941556	31941557	rs387608	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SIGLEC8	5,359 Icelandic ancestry individuals	NA	6p21.33		rs387608-A	0.1429	6E-12		0.181754	[0.13-0.23] unit increase	Illumina [7506463] (imputed)	N
828	chr6	31941556	31941557	rs387608	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PCDHGB4	5,352 Icelandic ancestry individuals	NA	6p21.33		rs387608-A	0.1429	2E-12		0.184372	[0.13-0.24] unit increase	Illumina [7506463] (imputed)	N
828	chr6	31941556	31941557	rs387608	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein OSM	5,348 Icelandic ancestry individuals	NA	6p21.33		rs387608-A	0.1429	4E-12		0.174055	[0.12-0.22] unit increase	Illumina [7506463] (imputed)	N
828	chr6	31941556	31941557	rs387608	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DES	5,344 Icelandic ancestry individuals	NA	6p21.33		rs387608-A	0.1429	5E-14		0.190553	[0.14-0.24] unit increase	Illumina [7506463] (imputed)	N
828	chr6	31941556	31941557	rs387608	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CFP	5,352 Icelandic ancestry individuals	NA	6p21.33		rs387608-A	0.1429	1E-15		0.207744	[0.16-0.26] unit decrease	Illumina [7506463] (imputed)	N
828	chr6	31941556	31941557	rs387608	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	SKIV2L, C4B, TNXB, DXO, STK19, C4A, C4A-AS1, CYP21A1P, TNXA, AL645922.1, STK19B, CYP21A2, C4B-AS1	rs387608-A	0.1214859	3E-25	(gp41 C34 peptide, HIV)	0.6703	[0.55-0.79] unit increase	Affymetrix [509946]	N
828	chr6	31941628	31941629	rs116420479	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	6p21.33	HLA region	rs116420479-?	NR	3E-8	(EA)			Affymetrix, Illumina [10537485] (imputed)	N
828	chr6	31941628	31941629	rs116420479	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	6p21.33	HLA region	rs116420479-?	NR	1E-8				Affymetrix, Illumina [10537485] (imputed)	N
828	chr6	31943231	31943232	rs41315812	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein USP25	5,360 Icelandic ancestry individuals	NA	6p21.33		rs41315812-T	0.0381	4E-157		1.22583	[1.14-1.32] unit increase	Illumina [7506463] (imputed)	N
828	chr6	31944035	31944036	rs1738434	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.33		rs1738434-G	0.595	1E-62				Affymetrix [10369434] (imputed)	N
828	chr6	31944035	31944036	rs1738434	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	STK19	rs1738434-T	NR	7E-11		0.0207324	[0.014-0.027] unit increase	Affymetrix [323858] (imputed)	N
828	chr6	31944035	31944036	rs1738434	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	STK19	rs1738434-T	NR	3E-9		0.0189414	[0.013-0.025] unit increase	Affymetrix [127266] (imputed)	N
828	chr6	31944035	31944036	rs1738434	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	STK19	rs1738434-T	NR	2E-10		0.0197638	[0.014-0.026] unit decrease	Affymetrix [323123] (imputed)	N
828	chr6	31944035	31944036	rs1738434	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p21.33	STK19	rs1738434-T	NR	4E-9		0.0185989	[0.012-0.025] unit increase	Affymetrix [323858] (imputed)	N
828	chr6	31944035	31944036	rs1738434	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	STK19	rs1738434-T	0.412	4E-34	(Trypsin-3, PRSS3.3479.71.2)	0.3	[0.26-0.34] unit decrease	Affymetrix [10572788] (imputed)	N
828	chr6	31945229	31945230	rs12524149	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs12524149-C	0.677	9E-49				Affymetrix [10369434] (imputed)	N
828	chr6	31945645	31945646	rs2734325	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	6p21.33	STK19	rs2734325-T	NR	3E-7	(EA)	1.0615711	[1.04-1.08]	Illumina [6627481] (imputed)	N
828	chr6	31946613	31946614	rs6941112	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	STK19	rs6941112-A	NR	3E-9		0.019993	[0.013-0.027] unit decrease	Affymetrix [323123] (imputed)	N
828	chr6	31946613	31946614	rs6941112	34011352	Schwarm C	2021-05-19	Orphanet J Rare Dis	Identification of two novel bullous pemphigoid- associated alleles, HLA-DQA1*05:05 and -DRB1*07:01, in Germans.	Bullous pemphigoid	438 German cases, 417 German controls	NA	6p21.33	STK19	rs6941112-?	NR	7E-6		0.498031	[0.28-0.71] unit increase	Affymetrix [up to 386296] (imputed)	N
828	chr6	31946613	31946614	rs6941112	31972866	Nagel M	2020-01-23	Acta Psychiatr Scand	Genome-wide association study of the sensitivity to environmental stress and adversity (SESA) neuroticism cluster.	Sensitivity to environmental stress and adversity	351,827 European ancestry individuals	NA	6p21.33	NR	rs6941112-A	NR	6E-12		0.01765	NR unit increase	NR [7259579]	N
828	chr6	31946973	31946974	rs77143442	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs77143442-C	0.023	3E-27	(Interleukin-21, IL21.7124.18.3)	0.9	[0.74-1.06] unit decrease	Affymetrix [10572788] (imputed)	N
828	chr6	31947026	31947027	rs181705462	26691988	Fritsche LG	2015-12-21	Nat Genet	A large genome-wide association study of age-related macular degeneration highlights contributions of rare and common variants.	Advanced age-related macular degeneration	16,144 European ancestry cases, 17,832 European ancestry controls	473 Asian ancestry cases, 1,099 Asian ancestry controls, 52 African ancestry cases, 361 African ancestry cases, 254 other non-European ancestry cases, 694 other non-European ancestry controls	6p21.33	C2, CFB, SKIV2L	rs181705462-?	NR	3E-10	(EA)	1.55		Illumina [12023830] (imputed)	N
828	chr6	31947459	31947460	rs389883	30626913	Amare AT	2019-01-09	Mol Psychiatry	Bivariate genome-wide association analyses of the broad depression phenotype combined with major depressive disorder, bipolar disorder or schizophrenia reveal eight novel genetic loci for depression.	Broad depression or schizophrenia	9,240 European ancestry broad depression cases, 9,519 European ancestry broad depression controls, 51,258 European ancestry individuals, 36,989 European and East Asian ancestry schizophrenia cases, 113,075 European and East Asian ancestry schizophrenia controls	322,580 individuals	6p21.33	STK19	rs389883-T	0.68	1E-12				Affymetrix, Illumina [at least 918921] (imputed)	N
828	chr6	31947916	31947917	rs114632474	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		STK19	rs114632474-?	NR	3E-10		1.8011	[NR] unit decrease	Affymetrix [NR] (imputed)	N
828	chr6	31972268	31972269	rs199619373	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	6p21.33	PRRC2A	rs199619373-A	0.1293	4E-8	(S1P d16:1)	0.1068	[0.069-0.144] unit decrease	Illumina [~ 47000000] (imputed)	N
828	chr6	31974354	31974355	rs28641793	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	6p21.33	NR	rs28641793-A	0.011961	6E-14		0.0840715	[0.061-0.107] unit increase	Affymetrix [16585745] (imputed)	N
828	chr6	31974722	31974723	rs28361034	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	C4A	rs28361034-G	0.722	7E-36	(Glutamate receptor 4, GRIA4.10760.107.3)	0.36	[0.3-0.42] unit increase	Affymetrix [10572788] (imputed)	N
828	chr6	31974722	31974723	rs28361034	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	C4A	rs28361034-G	0.722	1E-18	(Vesicle-fusing ATPase, NSF.13992.12.3)	0.26	[0.2-0.32] unit increase	Affymetrix [10572788] (imputed)	N
828	chr6	31975257	31975258	rs554383943	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.33	NR	rs554383943-C	0.986	2E-13		3.634	[3.29-3.98]	Illumina [11270530] (imputed)	N
828	chr6	31981145	31981146	rs4959021	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	6p21.33	Intergenic	rs4959021-T	NR	2E-6		0.0232941	[0.014-0.033] unit increase	Illumina [13519193] (imputed)	N
828	chr6	31981145	31981146	rs4959021	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.33	Intergenic	rs4959021-T	NR	5E-7	(women)	0.0322206	[0.02-0.045] unit increase	Illumina [13520550] (imputed)	N
828	chr6	31981145	31981146	rs4959021	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.33	Intergenic	rs4959021-T	NR	2E-9		0.0268709	[0.018-0.036] unit increase	Illumina [13520550] (imputed)	N
828	chr6	31981145	31981146	rs4959021	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	6p21.33	Intergenic	rs4959021-T	NR	3E-19		0.0468195	[0.037-0.057] unit increase	Illumina [13520550] (imputed)	N
829	chr6	31994722	31994723	rs200283861	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.33	NR	rs200283861-A	0.277	3E-23		1.203	[1.17-1.24]	Illumina [11270530] (imputed)	N
829	chr6	31994781	31994782	rs451637	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs451637-T	0.308	2E-22	(Beta-defensin 119, DEFB119.13455.10.3)	0.28	[0.22-0.34] unit decrease	Affymetrix [10572788] (imputed)	N
829	chr6	31996523	31996524	rs406658	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LDLRAD4	5,362 Icelandic ancestry individuals	NA	6p21.33		rs406658-A	0.1189	3E-18		0.250928	[0.19-0.31] unit increase	Illumina [7506463] (imputed)	N
829	chr6	31996523	31996524	rs406658	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HNF4A	5,363 Icelandic ancestry individuals	NA	6p21.33		rs406658-A	0.1189	5E-14		0.217282	[0.16-0.27] unit increase	Illumina [7506463] (imputed)	N
829	chr6	31996523	31996524	rs406658	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6p21.33	C4B	rs406658-A	0.110604	2E-10		0.024302784	[0.017-0.032] unit increase	Affymetrix [93095623] (imputed)	N
829	chr6	31996523	31996524	rs406658	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	C4A, C4B	rs406658-A	0.119	3E-52	(Complement C4, C4A.C4B.4481.34.2)	0.56	[0.48-0.64] unit increase	Affymetrix [10572788] (imputed)	N
829	chr6	32005266	32005267	rs431204	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p21.33	NR	rs431204-?	NR	1E-6		4.868	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
829	chr6	32005303	32005304	rs4713496	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.33		rs4713496-A	0.981	1E-36				Affymetrix [10369434] (imputed)	N
829	chr6	32005303	32005304	rs4713496	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs4713496-A	0.981	3E-36				Affymetrix [10369434] (imputed)	N
829	chr6	32005354	32005355	rs113720465	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.33	NR	rs113720465-A	0.052	6E-30	(conditional)	0.447	[0.31-0.59]	Illumina [11270530] (imputed)	N
829	chr6	32005648	32005649	rs396458	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein UBC	5,349 Icelandic ancestry individuals	NA	6p21.33		rs396458-G	0.1452	4E-20		0.229839	[0.18-0.28] unit increase	Illumina [7506463] (imputed)	N
829	chr6	32005648	32005649	rs396458	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TRIL	5,360 Icelandic ancestry individuals	NA	6p21.33		rs396458-G	0.1452	7E-12		0.183406	[0.13-0.24] unit increase	Illumina [7506463] (imputed)	N
829	chr6	32005648	32005649	rs396458	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LAYN	5,339 Icelandic ancestry individuals	NA	6p21.33		rs396458-G	0.1452	3E-15		0.189442	[0.14-0.24] unit increase	Illumina [7506463] (imputed)	N
829	chr6	32005648	32005649	rs396458	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL34	5,345 Icelandic ancestry individuals	NA	6p21.33		rs396458-G	0.1452	4E-20		0.227625	[0.18-0.28] unit increase	Illumina [7506463] (imputed)	N
829	chr6	32005648	32005649	rs396458	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GCNT4	5,342 Icelandic ancestry individuals	NA	6p21.33		rs396458-G	0.1452	3E-12		0.175139	[0.13-0.22] unit increase	Illumina [7506463] (imputed)	N
829	chr6	32006596	32006597	rs6462	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	CYP21A2	rs6462-C	NR	2E-9		0.0206131	[0.014-0.027] unit increase	Affymetrix [323123] (imputed)	N
829	chr6	32006885	32006886	rs6474	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	CYP21A2	rs6474-A	NR	4E-9		0.0198676	[0.013-0.026] unit increase	Affymetrix [323858] (imputed)	N
829	chr6	32006895	32006896	rs6455	26385043	Kertai MD	2015-06-17	Am Heart J	Genome-wide association study of new-onset atrial fibrillation after coronary artery bypass grafting surgery.	Postoperative atrial fibrillation in coronary artery bypass grafting surgery	620 European ancestry cases, 257 European ancestry controls	220 cases, 84 controls	6p21.33	CYP21A2	rs6455-G	0.015	3E-6		1.96	[0.51-7.58]	Illumina [524975]	N
829	chr6	32007062	32007063	rs6466	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Scarlet fever	6,812 European ancestry cases, 113,837 European ancestry controls	NA	6p21.33	NR	rs6466-?	NR	3E-6		0.0939	[0.055-0.133] unit increase	Illumina [at least 560000] (imputed)	N
829	chr6	32007623	32007624	rs6458	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TMEM52B	5,359 Icelandic ancestry individuals	NA	6p21.33		rs6458-G	0.119	2E-13		0.212277	[0.16-0.27] unit increase	Illumina [7506463] (imputed)	N
829	chr6	32007623	32007624	rs6458	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ISG15	5,349 Icelandic ancestry individuals	NA	6p21.33		rs6458-G	0.119	8E-28		0.307651	[0.25-0.36] unit decrease	Illumina [7506463] (imputed)	N
829	chr6	32007623	32007624	rs6458	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ERP29	5,363 Icelandic ancestry individuals	NA	6p21.33		rs6458-G	0.119	1E-12		0.209088	[0.15-0.27] unit increase	Illumina [7506463] (imputed)	N
829	chr6	32007623	32007624	rs6458	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CMPK1	5,365 Icelandic ancestry individuals	NA	6p21.33		rs6458-G	0.119	6E-14		0.220731	[0.16-0.28] unit increase	Illumina [7506463] (imputed)	N
829	chr6	32007623	32007624	rs6458	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C4A;C4B	5,362 Icelandic ancestry individuals	NA	6p21.33		rs6458-G	0.119	8E-56		0.450845	[0.39-0.51] unit increase	Illumina [7506463] (imputed)	N
829	chr6	32007624	32007625	rs6459	33941608	Khan A	2021-05-03	J Am Soc Nephrol	Medical Records-Based Genetic Studies of the Complement System.	Complement C4 levels	3,247 European ancestry individuals, 600 African ancestry individuals, 151 East Asian ancestry individuals	NA	6p21.33	C4	rs6459-T	0.12	8E-29		0.38	[0.32-0.43] unit increase	NR [NR] (imputed)	N
829	chr6	32007624	32007625	rs6459	33941608	Khan A	2021-05-03	J Am Soc Nephrol	Medical Records-Based Genetic Studies of the Complement System.	Complement C4 levels	3,247 European ancestry individuals, 600 African ancestry individuals, 151 East Asian ancestry individuals	NA	6p21.33	C4	rs6459-T	0.1	8E-30	(EA)	0.45	[0.39-0.50] unit increase	NR [NR] (imputed)	N
829	chr6	32008923	32008924	rs6447	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C4A;C4B	5,353 Icelandic ancestry individuals	NA	6p21.33		rs6447-A	0.01467	1E-18		0.67965	[0.53-0.83] unit decrease	Illumina [7506463] (imputed)	N
829	chr6	32009278	32009279	rs415620	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.33		rs415620-T	0.943	2E-17				Affymetrix [10369434] (imputed)	N
829	chr6	32009300	32009301	rs7774739	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.33	NR	rs7774739-A	0.993	1E-10	(conditional)	0.483	[0.26-0.7]	Illumina [11270530] (imputed)	N
829	chr6	32009374	32009375	rs7756934	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6p21.33	TNXB	rs7756934-?	NR	9E-6	(TAG 58:9)	0.2544521	[0.14-0.37] unit increase	Affymetrix [at least 2500000] (imputed)	N
829	chr6	32010731	32010732	rs1135809	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	TNXB	rs1135809-G	NR	1E-11		0.0213697	[0.015-0.028] unit decrease	Affymetrix [323123] (imputed)	N
829	chr6	32011203	32011204	rs2734313	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	TNXB	rs2734313-C	NR	9E-10		0.0195186	[0.013-0.026] unit increase	Affymetrix [323858] (imputed)	N
829	chr6	32011203	32011204	rs2734313	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	TNXB	rs2734313-C	NR	3E-8		0.0176763	[0.011-0.024] unit increase	Affymetrix [127266] (imputed)	N
829	chr6	32011203	32011204	rs2734313	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	TNXB	rs2734313-C	NR	5E-9		0.0169883	[0.011-0.023] unit increase	Affymetrix [321169] (imputed)	N
829	chr6	32011357	32011358	rs2856451	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	TNXB	rs2856451-A	NR	8E-12		0.0193125	[0.014-0.025] unit decrease	Affymetrix [319769] (imputed)	N
829	chr6	32011357	32011358	rs2856451	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	TNXB	rs2856451-A	NR	2E-13		0.0230817	[0.017-0.029] unit decrease	Affymetrix [323858] (imputed)	N
829	chr6	32011357	32011358	rs2856451	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	TNXB	rs2856451-A	NR	6E-11		0.0185015	[0.013-0.024] unit decrease	Affymetrix [319769] (imputed)	N
829	chr6	32011357	32011358	rs2856451	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	TNXB	rs2856451-A	NR	2E-11		0.0210983	[0.015-0.027] unit decrease	Affymetrix [127266] (imputed)	N
829	chr6	32011357	32011358	rs2856451	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	TNXB	rs2856451-A	NR	2E-15		0.0227758	[0.017-0.028] unit decrease	Affymetrix [321169] (imputed)	N
829	chr6	32011357	32011358	rs2856451	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p21.33	TNXB	rs2856451-G	0.518309	2E-11		0.017992081	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
829	chr6	32011357	32011358	rs2856451	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	6p21.33	TNXB	rs2856451-G	0.518312	6E-11		0.017482799	[0.012-0.023] unit increase	Affymetrix [93095623] (imputed)	N
829	chr6	32011357	32011358	rs2856451	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	6p21.33	NR	rs2856451-G	0.519311	4E-14		0.0506538	[0.037-0.064] unit decrease	Affymetrix [17914406] (imputed)	N
829	chr6	32011357	32011358	rs2856451	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	White blood cell count	8,825 African American individuals, 18,251 Hispanic/Latino individuals, 543 Asian ancestry individuals, 606 Native American ancestry individuals, 383 individuals	NA	6p21.33	NR	rs2856451-?	NR	7E-6		0.01116211	[0.0063-0.016] unit increase	Illumina [30613845] (imputed)	N
829	chr6	32011357	32011358	rs2856451	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	6p21.33	TNXB	rs2856451-G	0.5174	3E-95		0.07491311	[0.068-0.082] unit increase	Affymetrix [~ 2500000] (imputed)	N
829	chr6	32011357	32011358	rs2856451	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	6p21.33	TNXB	rs2856451-G	0.5175	5E-57		0.05732686	[0.05-0.064] unit increase	Affymetrix [~ 2500000] (imputed)	N
829	chr6	32011357	32011358	rs2856451	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	6p21.33	TNXB	rs2856451-G	0.5175	8E-50		0.05341342	[0.046-0.06] unit increase	Affymetrix [~ 2500000] (imputed)	N
829	chr6	32014455	32014456	rs34214527	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	6p21.33	Intergenic	rs34214527-C	0.9156	4E-10		0.0256	[0.018-0.034] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
829	chr6	32014574	32014575	rs2856448	35264221	Caron B	2022-03-09	Genome Med	Integrative genetic and immune cell analysis of plasma proteins in healthy donors identifies novel associations involving primary immune deficiency genes.	TN X plasma levels	400 French ancestry individuals	NA	6p21.33		rs2856448-G	NR	1E-38		0.685	[0.64-0.73] ng/mL increase	Illumina [5201092] (imputed)	N
829	chr6	32014827	32014828	rs433061	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	6p21.33	NR	rs433061-A	0.111550236715686	4E-17		0.012269953	[0.0094-0.0151] unit decrease	NR [NR]	N
829	chr6	32014827	32014828	rs433061	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	6p21.33	NR	rs433061-?	NR	8E-6		0.0786	[0.044-0.113] unit decrease	Illumina [at least 560000] (imputed)	N
829	chr6	32017606	32017607	rs146280229	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.33	NR	rs146280229-C	0.007	1E-11	(conditional)	1.815	[1.64-1.99]	Illumina [11270530] (imputed)	N
829	chr6	32019381	32019382	rs115521560	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL18RAP	5,360 Icelandic ancestry individuals	NA	6p21.33		rs115521560-C	0.07408	4E-6		0.168353	[0.097-0.24] unit decrease	Illumina [7506463] (imputed)	N
829	chr6	32019381	32019382	rs115521560	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C4A;C4B	5,353 Icelandic ancestry individuals	NA	6p21.33		rs115521560-C	0.07408	6E-20		0.322359	[0.25-0.39] unit decrease	Illumina [7506463] (imputed)	N
829	chr6	32019511	32019512	rs41316748	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	6p21.33	NR	rs41316748-C	0.0430592148955273	1E-8		0.012935713	[0.0085-0.0174] unit increase	NR [NR]	N
829	chr6	32019511	32019512	rs41316748	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	6p21.33	NR	rs41316748-C	0.0430592148955273	2E-8		0.021394862	[0.014-0.029] unit increase	NR [NR]	N
829	chr6	32019511	32019512	rs41316748	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	6p21.33	NR	rs41316748-C	0.0430592148955273	2E-8		0.0137647055	[0.0089-0.0186] unit increase	NR [NR]	N
829	chr6	32019511	32019512	rs41316748	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	TNXB	rs41316748-C	0.042	2E-114	(Ubiquitin carboxyl-terminal hydrolase 25, USP25.9215.117.3)	1.31	[1.19-1.43] unit increase	Affymetrix [10572788] (imputed)	N
829	chr6	32019511	32019512	rs41316748	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p21.33	TNXB	rs41316748-C	0.04	1E-12		1.19	[1.15-1.23]	Illumina [at least 560000] (imputed)	N
829	chr6	32019745	32019746	rs2857009	23028341	Yang X	2012-09-13	PLoS Genet	Genome-wide association study for serum complement C3 and C4 levels in healthy Chinese subjects.	Complement C3 and C4 levels	1,999 Han Chinese ancestry male individuals	1,496 Han Chinese ancestry male individuals	6p21.33	C4	rs2857009-G	0.20	1E-22	(Serum level of C4)	0.08	[0.060-0.100] g/L increase	Illumina [1940245] (imputed)	N
829	chr6	32020960	32020961	rs34562262	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RACGAP1	5,360 Icelandic ancestry individuals	NA	6p21.33		rs34562262-C	0.04252	7E-83		0.878733	[0.79-0.97] unit decrease	Illumina [7506463] (imputed)	N
829	chr6	32020960	32020961	rs34562262	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL18RAP	5,360 Icelandic ancestry individuals	NA	6p21.33		rs34562262-C	0.04252	3E-89		0.913858	[0.82-1] unit decrease	Illumina [7506463] (imputed)	N
829	chr6	32020960	32020961	rs34562262	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	6p21.33	TNXB	rs34562262-C	0.059314	9E-12		0.03548271	[0.025-0.046] unit increase	Affymetrix [93095623] (imputed)	N
829	chr6	32020960	32020961	rs34562262	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	6p21.33	NR	rs34562262-?		2E-15	(AGER)	0.6405	[NR] unit decrease	Illumina [NR]	N
829	chr6	32021129	32021130	rs11969759	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RACGAP1	5,360 Icelandic ancestry individuals	NA	6p21.33		rs11969759-T	0.03907	1E-34		0.606915	[0.51-0.7] unit decrease	Illumina [7506463] (imputed)	N
829	chr6	32021129	32021130	rs11969759	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL18RAP	5,360 Icelandic ancestry individuals	NA	6p21.33		rs11969759-T	0.03907	2E-51		0.736692	[0.64-0.83] unit decrease	Illumina [7506463] (imputed)	N
829	chr6	32021129	32021130	rs11969759	30636644	Nazarian A	2019-01-12	Alzheimers Res Ther	Genome-wide analysis of genetic predisposition to Alzheimer's disease and related sex disparities.	Alzheimer's disease	952 European ancestry male cases, 1,789 European ancestry female cases, 6,337 European ancestry male controls, 8,402 European ancestry female controls	NA	6p21.33	TNXB	rs11969759-?	NR	2E-6	(females)	1.6222337		Affymetrix, Illumina [2928658] (imputed)	N
829	chr6	32024831	32024832	rs6937318	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	TNXB	rs6937318-T	NR	9E-16		0.0245113	[0.019-0.03] unit increase	Affymetrix [323123] (imputed)	N
829	chr6	32024831	32024832	rs6937318	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.33		rs6937318-C	0.513236	2E-15		1.0343082	[1.03-1.04]	Affymetrix, Illumina [9851866] (imputed)	N
829	chr6	32025862	32025863	rs369637	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	TNXB	rs369637-T	NR	9E-9		0.0231685	[0.015-0.031] unit increase	Affymetrix [323123] (imputed)	N
829	chr6	32025862	32025863	rs369637	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.33	ABHD16A, AGER, AGPAT1, AIF1, APOM, ATF6B, ATP6V1G2, ATP6V1G2-DDX39B, BAG6, BTNL2, C2, C2-AS1, C4A, C4B, C4B_2, C6orf10, C6orf15, C6orf25, C6orf47, C6orf48, CCHCR1, CDSN, CFB, CLIC1, CSNK2B, CYP21A1P, CYP21A2, DDAH2, DDX39B, DXO, EGFL8, EHMT2, FKBPL, GPANK1, GPSM3, HCG23, HCG26, HCG27, HCP5, HLA-B, HLA-C, HLA-DOB, HLA-DQA1, HLA-DQA2, HLA-DQB1, HLA-DQB2, HLA-DRA, HLA-DRB1, HLA-DRB5, HLA-DRB6, HSPA1A, HSPA1B, HSPA1L, LOC100507547, LSM2, LST1, LTA, LTB, LY6G5B, LY6G5C, LY6G6C, LY6G6D, LY6G6E, LY6G6F, MCCD1, MICA, MICB, MIR1236, MIR3135B, MIR4646, MIR6721, MIR6832, MIR6833, MIR6891, MSH5, MSH5-SAPCD1, NCR3, NELFE, NEU1, NFKBIL1, NOTCH4, PBX2, POU5F1, PPT2, PPT2-EGFL8, PRRC2A, PRRT1, PSMB8, PSMB8-AS1, PSMB9, PSORS1C1, PSORS1C2, PSORS1C3, RNF5, RNF5P1, SAPCD1, SAPCD1-AS1, SKIV2L, SLC44A4, SNORA38, SNORD117, SNORD48, SNORD52, SNORD84, STK19, TAP1, TAP2, TCF19, TNF, TNXA, TNXB, VARS, VWA7, ZBTB12	rs369637-?		2E-10		1.098901	[1.06-1.12]	Affymetrix, Illumina [NR]	N
829	chr6	32026106	32026107	rs1009382	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:0_[M+H]1+/Phosphatidylethanolamine_35:0_[M+H]1+/Phosphatidate_37:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	6p21.33		rs1009382-C	NR	4E-10		0.0841202	[0.058-0.111] unit decrease	Affymetrix [87696910] (imputed)	N
829	chr6	32026807	32026808	rs12198173	20041166	Fellay J	2009-12-24	PLoS Genet	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	6p21.33	TNXB	rs12198173-?	NR	3E-6	(progression)			Illumina [NR]	N
829	chr6	32028148	32028149	rs1150758	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p21.33	TNXB	rs1150758-C	NR	1E-10		0.0261542	[0.018-0.034] unit decrease	Affymetrix [323858] (imputed)	N
829	chr6	32029204	32029205	rs1150757	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	6p21.33	NR	rs1150757-A	0.111940064634901	1E-14		0.014838932	[0.011-0.019] unit decrease	NR [NR]	N
829	chr6	32029204	32029205	rs1150757	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	6p21.33	NR	rs1150757-A	0.111940064634901	3E-14		0.019090127	[0.014-0.024] unit decrease	NR [NR]	N
829	chr6	32029204	32029205	rs1150757	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	6p21.33	NR	rs1150757-A	0.111940064634901	1E-14		0.012505894	[0.0093-0.0157] unit decrease	NR [NR]	N
829	chr6	32029204	32029205	rs1150757	29769526	Estrada K	2018-05-16	Nat Commun	A whole-genome sequence study identifies genetic risk factors for neuromyelitis optica.	Neuromyelitis optica (AQP4-IgG-positive)	66 European ancestry cases, 784 European ancestry controls	66 European ancestry cases, 460 European ancestry controls	6p21.33	C4A, C4B	rs1150757-A	0.1	3E-16		4.66	[3.22-6.74]	Affymetrix [6804788] (imputed)	N
829	chr6	32029204	32029205	rs1150757	29769526	Estrada K	2018-05-16	Nat Commun	A whole-genome sequence study identifies genetic risk factors for neuromyelitis optica.	Neuromyelitis optica	66 European ancestry AQP4-IgG antibody seropositive cases, 63 European ancestry AQP4-IgG antibody seronegative cases, 784 European ancestry controls	66 European ancestry AQP4-IgG antibody seropositive cases, 20 European ancestry AQP4-IgG antibody seronegative cases, 460 European ancestry controls	6p21.33	C4A, C4B	rs1150757-A	0.10	7E-12		2.86	[1.98-4.14]	Affymetrix [6804788] (imputed)	N
829	chr6	32029204	32029205	rs1150757	27399966	Morris DL	2016-07-11	Nat Genet	Genome-wide association meta-analysis in Chinese and European individuals identifies ten new loci associated with systemic lupus erythematosus.	Systemic lupus erythematosus	1,659 Chinese ancestry cases, 3,398 Chinese ancestry controls, 4,036 European ancestry cases, 6,959 European ancestry controls	3,043 Chinese ancestry cases, 5,074 Chinese ancestry controls, 2,643 European ancestry cases, 9,032 European ancestry controls	6p21.33	MHC class III	rs1150757-?	0.092	2E-101	(EA)	2.53	[NR]	NR [6344733] (imputed)	N
829	chr6	32029204	32029205	rs1150757	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	NA	6p21.33	TNXB	rs1150757-A		6E-107		2.33	[NR]	Illumina [> 644674] (imputed)	N
829	chr6	32030699	32030700	rs9267797	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs9267797-T	0.015	7E-94	(Tenascin-X, TNXB.5698.60.3)	1.97	[1.77-2.17] unit increase	Affymetrix [10572788] (imputed)	N
829	chr6	32032742	32032743	rs204883	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SURF1	5,347 Icelandic ancestry individuals	NA	6p21.33		rs204883-A	0.3642	4E-14		0.138805	[0.1-0.17] unit decrease	Illumina [7506463] (imputed)	N
829	chr6	32032742	32032743	rs204883	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	6p21.33	NR	rs204883-A	0.404749301755246	2E-9		0.005591649	[0.0038-0.0074] unit increase	NR [NR]	N
829	chr6	32032742	32032743	rs204883	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	6p21.33	Intergenic	rs204883-A	0.414	1E-8	(MTAG)	0.0096	[0.0063-0.0129] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
829	chr6	32032742	32032743	rs204883	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	6p21.33	Intergenic	rs204883-A	0.3876	1E-10	(MTAG)	0.0151	[0.01-0.02] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
829	chr6	32032742	32032743	rs204883	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	6p21.33	Intergenic	rs204883-A	0.3876	7E-9		0.017	[0.011-0.023] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
829	chr6	32033615	32033616	rs1265889	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Nephrotic syndrome	775 European ancestry cases, 475,255 European ancestry controls, 1,314 East Asian ancestry cases, 177,412 East Asian ancestry controls	NA	6p21.33		rs1265889-A	NR	2E-16		0.524	[0.4-0.65] unit increase	Affymetrix, Illumina [25844401] (imputed)	N
829	chr6	32033943	32033944	rs3117189	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FTMT	5,365 Icelandic ancestry individuals	NA	6p21.33		rs3117189-A	0.2078	7E-41		0.308372	[0.26-0.35] unit decrease	Illumina [7506463] (imputed)	N
829	chr6	32038549	32038550	rs1150755	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	6p21.33	TNXB	rs1150755-?	NR	6E-117		1.3	[1.19-1.41]	Illumina [at least 5000000] (imputed)	N
829	chr6	32040603	32040604	rs204881	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p21.33	NR	rs204881-?	NR	5E-14		0.1561	[0.12-0.2] unit increase	Illumina [at least 560000] (imputed)	N
829	chr6	32044850	32044851	rs2021783	25249183	Lu X	2014-09-23	Hum Mol Genet	Genome-wide association study in Chinese identifies novel loci for blood pressure and hypertension.	Systolic blood pressure	11,816 Han Chinese ancestry individuals	69,146 Han Chinese ancestry individuals	6p21.33	CYP21A2	rs2021783-C	0.79	3E-9		0.68	[0.44-0.92] unit increase	Affymetrix, Illumina [2485448] (imputed)	N
829	chr6	32044850	32044851	rs2021783	25249183	Lu X	2014-09-23	Hum Mol Genet	Genome-wide association study in Chinese identifies novel loci for blood pressure and hypertension.	Hypertension	5,065 Han Chinese ancestry cases, 4,404 Han Chinese ancestry controls	29,799 Han Chinese ancestry cases, 39,347 Han Chinese ancestry controls	6p21.33	CYP21A2	rs2021783-C	0.79	4E-11				Affymetrix, Illumina [2485448] (imputed)	N
829	chr6	32044850	32044851	rs2021783	25249183	Lu X	2014-09-23	Hum Mol Genet	Genome-wide association study in Chinese identifies novel loci for blood pressure and hypertension.	Diastolic blood pressure	11,816 Han Chinese ancestry individuals	69,146 Han Chinese ancestry individuals	6p21.33	CYP21A2	rs2021783-C	0.79	2E-12		0.49	[0.35-0.63] unit increase	Affymetrix, Illumina [2485448] (imputed)	N
829	chr6	32047267	32047268	rs17201560	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		TNXB	rs17201560-?	NR	3E-10		1.80132	[NR] unit decrease	Affymetrix [NR] (imputed)	N
829	chr6	32049422	32049423	rs12211410	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6p21.33		rs12211410-T	0.085	2E-13	(conditional-joint)	0.0185	[0.014-0.023] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
829	chr6	32050066	32050067	rs185819	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.33		rs185819-T	0.533	5E-83				Affymetrix [10369434] (imputed)	N
829	chr6	32050066	32050067	rs185819	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p21.33		rs185819-T	0.533	1E-58				Affymetrix [10369434] (imputed)	N
829	chr6	32050066	32050067	rs185819	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Automobile speeding propensity	404,291 European ancestry individuals	NA	6p21.33	ATF6B	rs185819-T	0.5357	2E-12		0.01581973	[0.011-0.02] unit increase	Affymetrix [11514463] (imputed)	N
829	chr6	32050066	32050067	rs185819	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Systolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	6p21.33	TNXB	rs185819-C	0.513	2E-13	(EA, initial)	0.534	[0.39-0.68] unit increase	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
829	chr6	32050066	32050067	rs185819	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Systolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	6p21.33	TNXB	rs185819-C	0.513	1E-17		0.365	[0.28-0.45] unit increase	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
829	chr6	32050066	32050067	rs185819	18391951	Gudbjartsson DF	2008-04-06	Nat Genet	Many sequence variants affecting diversity of adult human height.	Height	30,968 European ancestry individuals	8,541 European ancestry individuals	6p21.33	HLA class III	rs185819-T	0.52	3E-8		5.2	[3.44-6.96] % s.d. increase	Affymetrix, Illumina [up to 304226]	N
829	chr6	32050757	32050758	rs1150754	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	TNXB	rs1150754-T	NR	9E-16		0.0330216	[0.025-0.041] unit decrease	Affymetrix [323858] (imputed)	N
829	chr6	32050757	32050758	rs1150754	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	TNXB	rs1150754-T	NR	3E-14		0.0312441	[0.023-0.039] unit decrease	Affymetrix [127266] (imputed)	N
829	chr6	32050757	32050758	rs1150754	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Myeloperoxidase levels	21,758 European ancestry individuals	9,173 individuals	6p21.33		rs1150754-T	0.15	7E-9		0.0636	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
829	chr6	32050757	32050758	rs1150754	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	6p21.33	TNXB	rs1150754-C	NR	3E-12	(EA)	1.117	[1.09-1.15]	Illumina [6627481] (imputed)	N
829	chr6	32050757	32050758	rs1150754	21408207	Chung SA	2011-03-03	PLoS Genet	Differential genetic associations for systemic lupus erythematosus based on anti-dsDNA autoantibody production.	Systemic lupus erythematosus	811 anti-dsDNA positive European ancestry cases, 906 anti-dsDNA negative European ancestry cases, 4,813 European ancestry controls	NA	6p21.33	TNXB	rs1150754-A	0.13	6E-29	(anti-dsDNA +)	2.21	[1.93-2.53]	Illumina [421318] (imputed)	N
829	chr6	32059866	32059867	rs1150753	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	6p21.33	NR	rs1150753-G	0.09	6E-19		1.25	[1.19-1.31]	Illumina [8468885] (imputed)	N
829	chr6	32059866	32059867	rs1150753	26316170	Demirci FY	2015-08-28	Arthritis Rheumatol	Identification of a New Susceptibility Locus for Systemic Lupus Erythematosus on Chromosome 12 in Individuals of European Ancestry.	Systemic lupus erythematosus	661 European ancestry cases, 487 European ancestry controls	4,467 European ancestry cases, 9,114 European ancestry controls	6p21.33	TNXB	rs1150753-?	NR	6E-9				Affymetrix [up to 700598]	N
829	chr6	32060466	32060467	rs774873925	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	TNXB	rs774873925-CA	NR	3E-8		0.0192957	[0.012-0.026] unit increase	Affymetrix [323123] (imputed)	N
829	chr6	32061338	32061339	rs57079996	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs57079996-?		1E-7		1.06	[1.04-1.09]	Illumina [7645193] (imputed)	N
829	chr6	32061338	32061339	rs57079996	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs57079996-?		4E-8		1.77	[1.45-2.18]	Illumina [7645193] (imputed)	N
829	chr6	32063895	32063896	rs41270458	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RACGAP1	5,360 Icelandic ancestry individuals	NA	6p21.33		rs41270458-A	0.02122	1E-45		0.927486	[0.8-1.06] unit decrease	Illumina [7506463] (imputed)	N
829	chr6	32063895	32063896	rs41270458	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL18RAP	5,360 Icelandic ancestry individuals	NA	6p21.33		rs41270458-A	0.02122	2E-37		0.831007	[0.7-0.96] unit decrease	Illumina [7506463] (imputed)	N
829	chr6	32064725	32064726	rs1150752	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p21.33	TNXB	rs1150752-C		7E-35		0.041	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
829	chr6	32064725	32064726	rs1150752	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	6p21.33	NR	rs1150752-C	0.112114488054202	6E-13		0.01584757	[0.012-0.02] unit decrease	NR [NR]	N
829	chr6	32066764	32066765	rs13199524	30552173	Aterido A	2018-12-14	Ann Rheum Dis	Genetic variation at the glycosaminoglycan metabolism pathway contributes to the risk of psoriatic arthritis but not psoriasis.	Psoriatic arthritis	744 Spanish ancestry cases, 1,454 Spanish ancestry controls	1,430 cases, 1,417 controls	6p21.33	NR	rs13199524-?	NR	6E-10		6.2	[NR] z-score increase	Illumina [1387382] (imputed)	N
829	chr6	32068494	32068495	rs116298992	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TNXB	5,363 Icelandic ancestry individuals	NA	6p21.32		rs116298992-T	0.03624	6E-299		1.674	[1.59-1.76] unit decrease	Illumina [7506463] (imputed)	N
829	chr6	32068494	32068495	rs116298992	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.32	NR	rs116298992-C	0.96390625	8E-63	(C2, 3186_2_2)	1.129958	[1-1.26] unit increase	Illumina [> 1000000] (imputed)	N
829	chr6	32068494	32068495	rs116298992	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.32	NR	rs116298992-C	0.96390625	6E-141	(TNXB, 5698_60_3)	1.6212647	[1.5-1.74] unit increase	Illumina [> 1000000] (imputed)	N
829	chr6	32068494	32068495	rs116298992	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.32	NR	rs116298992-C	0.96390625	5E-58	(ISG15, 14148_2_3)	1.0691733	[0.94-1.2] unit increase	Illumina [> 1000000] (imputed)	N
829	chr6	32068494	32068495	rs116298992	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.32	NR	rs116298992-C	0.96390625	3E-16	(DEFB119, 13455_10_3)	0.5401916	[0.41-0.67] unit decrease	Illumina [> 1000000] (imputed)	N
829	chr6	32068494	32068495	rs116298992	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.32	NR	rs116298992-C	0.96390625	3E-12	(MICA, 2730_58_2)	0.47020385	[0.34-0.6] unit increase	Illumina [> 1000000] (imputed)	N
829	chr6	32068494	32068495	rs116298992	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.32	NR	rs116298992-C	0.96390625	2E-42	(CFB, 4129_72_1)	0.90520996	[0.78-1.03] unit increase	Illumina [> 1000000] (imputed)	N
829	chr6	32068494	32068495	rs116298992	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.32	NR	rs116298992-C	0.96390625	1E-14	(FTMT, 8048_9_3)	0.51547647	[0.39-0.65] unit decrease	Illumina [> 1000000] (imputed)	N
829	chr6	32070068	32070069	rs41268896	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Atopic dermatitis	2,079 European ancestry cases, 3,867 European ancestry controls	NA	6p21.32	c6orf10	rs41268896-A	NR	4E-8		1.298	[1.238-1.361]	Affymetrix, Illumina, Perlegen [up to 5493100] (imputed)	N
829	chr6	32070073	32070074	rs41268899	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	TNXB, ATF6B	rs41268899-A	NR	4E-8		0.0257754	[0.017-0.035] unit increase	Affymetrix [321114] (imputed)	N
829	chr6	32071007	32071008	rs41268902	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	6p21.32	NR	rs41268902-A	NR	5E-6		1.09	[NR]	Illumina [7158791] (imputed)	N
829	chr6	32071009	32071010	rs28732173	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p21.32	NR	rs28732173-?	NR	4E-16		0.166	[0.13-0.21] unit decrease	Illumina [at least 560000] (imputed)	N
829	chr6	32071016	32071017	rs3117181	21829377	Lemaitre RN	2011-07-28	PLoS Genet	Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Plasma omega-3 polyunsaturated fatty acid levels (docosapentaenoic acid)	8,866 European ancestry individuals	NA	6p21.32	TNXB	rs3117181-C	NR	5E-7		0.02	[NR] % increase	Affymetrix, Illumina [NR]	N
829	chr6	32071892	32071893	rs3134954	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Intraocular pressure	133,492 European ancestry individuals	NA	6p21.32	TNXB	rs3134954-?	NR	3E-9		0.1058	[0.071-0.141] unit increase	Affymetrix, Illumina [up to 40000000] (imputed)	N
829	chr6	32074803	32074804	rs12153855	23886662	Weidinger S	2013-07-25	Hum Mol Genet	A genome-wide association study of atopic dermatitis identifies loci with overlapping effects on asthma and psoriasis.	Atopic dermatitis	1563 European ancestry cases, 4,054 European ancestry controls	2,286 European ancestry cases, 3,160 European ancestry controls	6p21.32	TNXB, CREBL1	rs12153855-T	NR	3E-14		1.581	[1.405-1.779]	Illumina [2406139] (imputed)	N
829	chr6	32074803	32074804	rs12153855	22694956	Cipriani V	2012-06-13	Hum Mol Genet	Genome-wide association study of age-related macular degeneration identifies associated variants in the TNXB-FKBPL-NOTCH4 region of chromosome 6p21.3.	Age-related macular degeneration	893 European ancestry cases, 2,199 European ancestry controls	1,411 European ancestry cases, 1,431 European ancestry controls	6p21.32	TNXB	rs12153855-C	0.011	1E-9		1.44	[1.28-1.63]	Illumina [2272849] (imputed)	N
829	chr6	32075562	32075563	rs429150	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	TNXB, ATF6B	rs429150-C	NR	3E-8		0.0158143	[0.01-0.021] unit increase	Affymetrix [321169] (imputed)	N
829	chr6	32075562	32075563	rs429150	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6p21.32	ATF6B, TNXB	rs429150-C	0.445264	8E-12		0.016466303	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
829	chr6	32075562	32075563	rs429150	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6p21.32		rs429150-T	0.5292	2E-9		0.0085	[0.0058-0.0112] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
829	chr6	32075562	32075563	rs429150	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6p21.32	Intergenic	rs429150-T	0.5292	1E-11	(MTAG)	0.0089	[0.0064-0.0114] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
829	chr6	32075562	32075563	rs429150	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	6p21.32	TNXB, ATF6B	rs429150-C	0.4446	3E-13		0.02583585	[0.019-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
829	chr6	32076498	32076499	rs2269426	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Neuroticism	274,107 British ancestry individuals	NA	6p21.32	NR	rs2269426-A	0.3594	3E-12		0.01334	[0.0096-0.0171] unit increase	NR [8968716] (imputed)	N
829	chr6	32076498	32076499	rs2269426	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	6p21.32	NR	rs2269426-A	0.37783192572683	3E-11		0.010916309	[0.0077-0.0141] unit increase	NR [NR]	N
829	chr6	32076498	32076499	rs2269426	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	6p21.32	NR	rs2269426-A	0.37783192572683	4E-11		0.006849158	[0.0048-0.0089] unit increase	NR [NR]	N
829	chr6	32076498	32076499	rs2269426	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	6p21.32	HLA-C	rs2269426-A	0.359398	1E-14		7.71	z score increase	NR [10847151] (imputed)	N
829	chr6	32076498	32076499	rs2269426	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling worry	372,869 European ancestry individuals	NA	6p21.32	HLA-C	rs2269426-A	0.359398	4E-15		7.868	unit increase	NR [10847151] (imputed)	N
829	chr6	32076498	32076499	rs2269426	19198610	Gudbjartsson DF	2009-02-08	Nat Genet	Sequence variants affecting eosinophil numbers associate with asthma and myocardial infarction.	Eosinophil counts	9,392 European ancestry individuals	12,118 European ancestry individuals, 5,212 East Asian ancestry individuals	6p21.32	MHC	rs2269426-T	0.76	3E-6	(EA)	4.6	[2.7-6.6] % standard unit increase	Illumina [312179]	N
829	chr6	32079566	32079567	rs17207986	20848476	Haritunians T	2010-11-01	Inflamm Bowel Dis	Genetic predictors of medically refractory ulcerative colitis.	Ulcerative colitis	324 European ancestry medically refractory ulcerative colitis cases, 537 European ancestry non-medically refractory ulcerative colitis cases, 2,601 European ancestry controls	NA	6p21.32	MHC	rs17207986-G	NR	1E-16	(Analysis III)	3.95	[NR]	Illumina [313720]	N
829	chr6	32080145	32080146	rs3130342	32469254	Matsunaga H	2020-05-29	Circ Genom Precis Med	Transethnic Meta-analysis of Genome-wide Association Studies Identifies Three New Loci and Characterizes Population-specific Differences for Coronary Artery Disease.	Coronary artery disease	15,302 Japanese ancestry cases, 76,014 European and East Asian ancestry cases, 36,140 Japanese ancestry controls, 264,785 European and East Asian ancestry controls	NA	6p21.32	TNXB, ATF6B	rs3130342-C	0.83	3E-9		1.08	[1.06-1.09]	Illumina [5167567] (imputed)	N
829	chr6	32080145	32080146	rs3130342	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	6p21.32	TNXB, ATF6B	rs3130342-A	0.149	5E-10		0.126	[0.087-0.165] unit decrease	Affymetrix [~ 11900000] (imputed)	N
829	chr6	32080190	32080191	rs1269852	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ISG15	5,349 Icelandic ancestry individuals	NA	6p21.32		rs1269852-C	0.08142	2E-98		0.682855	[0.62-0.75] unit increase	Illumina [7506463] (imputed)	N
829	chr6	32080190	32080191	rs1269852	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	6p21.32	NR	rs1269852-G	0.0755467	2E-8		0.067160755	[0.044-0.09] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
829	chr6	32080382	32080383	rs9469084	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	6p21.32	ATF6B, TNXB	rs9469084-T	0.065593	5E-11		0.0346535	[0.027-0.043] unit decrease	Affymetrix [93095623] (imputed)	N
829	chr6	32083174	32083175	rs8111	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ATF6B	5,359 Icelandic ancestry individuals	NA	6p21.32		rs8111-T	0.2409	7E-30		0.245233	[0.2-0.29] unit increase	Illumina [7506463] (imputed)	N
829	chr6	32083174	32083175	rs8111	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	ATF6B	rs8111-T	0.266	1E-15	(Cyclic AMP-dependent transcription factor ATF-6 alpha, ATF6.11277.23.3)	0.22	[0.16-0.28] unit decrease	Affymetrix [10572788] (imputed)	N
829	chr6	32083174	32083175	rs8111	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling hurt	372,047 European ancestry individuals	NA	6p21.32	HLA-C	rs8111-T	0.251639	1E-8		5.73	z score increase	NR [10847151] (imputed)	N
829	chr6	32083174	32083175	rs8111	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p21.32	ATF6B	rs8111-?	0.6	1E-6	(Turkish)	1.5873016	[1.32-1.92]	Illumina [up to 547389]	N
829	chr6	32083299	32083300	rs8283	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TYK2	5,361 Icelandic ancestry individuals	NA	6p21.32		rs8283-G	0.1925	3E-11		0.158998	[0.11-0.21] unit increase	Illumina [7506463] (imputed)	N
829	chr6	32083299	32083300	rs8283	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL21	5,363 Icelandic ancestry individuals	NA	6p21.32		rs8283-G	0.1925	1E-29		0.268365	[0.22-0.31] unit increase	Illumina [7506463] (imputed)	N
829	chr6	32083299	32083300	rs8283	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FTMT	5,365 Icelandic ancestry individuals	NA	6p21.32		rs8283-G	0.1925	1E-46		0.339863	[0.29-0.39] unit increase	Illumina [7506463] (imputed)	N
829	chr6	32083299	32083300	rs8283	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C4A;C4B	5,353 Icelandic ancestry individuals	NA	6p21.32		rs8283-G	0.1925	4E-102		0.479658	[0.44-0.52] unit increase	Illumina [7506463] (imputed)	N
829	chr6	32083299	32083300	rs8283	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.32	ATF6B, TNXB	rs8283-G	0.1906439	2E-17	(Complement C4)	0.487	[0.38-0.6] unit increase	Affymetrix [509946]	N
829	chr6	32088853	32088854	rs2228628	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ATF6	5,363 Icelandic ancestry individuals	NA	6p21.32		rs2228628-C	0.25	4E-19		0.190713	[0.15-0.23] unit decrease	Illumina [7506463] (imputed)	N
829	chr6	32089141	32089142	rs204888	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.32	TNXB, ATF6B, FKBPL	rs204888-T	0.09628887	2E-12	(EA, Complement C4b)	0.5278	[0.38-0.67] unit increase	Affymetrix [509946]	N
829	chr6	32094592	32094593	rs204893	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.32		rs204893-T	0.566	3E-36				Affymetrix [10369434] (imputed)	N
829	chr6	32094592	32094593	rs204893	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.32		rs204893-T	0.566	1E-56				Affymetrix [10369434] (imputed)	N
829	chr6	32094592	32094593	rs204893	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling nervous	373,121 European ancestry individuals	NA	6p21.32	HLA-C	rs204893-T	0.441671	8E-11		6.5	z score decrease	NR [10847151] (imputed)	N
829	chr6	32094592	32094593	rs204893	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	6p21.32	intergenic	rs204893-T	0.55833	1E-12		7.076	z score decrease	Illumina [18485882] (imputed)	N
829	chr6	32096000	32096001	rs3130288	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p21.32	NR	rs3130288-A	0.12	5E-11		1.16	[1.11-1.22]	Affymetrix [9886854] (imputed)	N
829	chr6	32096000	32096001	rs3130288	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p21.32	NR	rs3130288-A	0.12	5E-14			[NR]	Affymetrix [9886854] (imputed)	N
829	chr6	32096000	32096001	rs3130288	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in never smokers	8,631 European ancestry cases, 120,544 European ancestry controls	NA	6p21.32	NR	rs3130288-A	0.12	2E-11		1.17	[1.12-1.23]	Affymetrix [9886854] (imputed)	N
829	chr6	32096000	32096001	rs3130288	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome)	345 Swedish ancestry cases, 2,025 Swedish ancestry controls	251 European ancestry cases, 4,901 European ancestry controls	6p21.32	CREBL1	rs3130288-A	0.345	4E-66		4.16	[3.54-4.90]	Illumina [118177]	N
829	chr6	32096000	32096001	rs3130288	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p21.32	CREBL1	rs3130288-A	0.345	3E-33				Illumina [118177]	N
829	chr6	32097610	32097611	rs41268905	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	6p21.32	FKBPL	rs41268905-A	0.1048	4E-11		0.003	[0.002-0.004] unit decrease	Affymetrix [15275733] (imputed)	N
829	chr6	32102304	32102305	rs3134963	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	6p21.32	FKBPL, PRRT1	rs3134963-T	0.149	3E-10		0.128	[0.089-0.167] unit decrease	Affymetrix [~ 11900000] (imputed)	N
829	chr6	32102679	32102680	rs13211318	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Strep throat	52,487 European ancestry cases, 22,017 European ancestry controls	NA	6p21.32	NR	rs13211318-?	NR	3E-7		0.051	[0.031-0.071] unit increase	Illumina [at least 560000] (imputed)	N
829	chr6	32103748	32103749	rs145827824	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.32	NR	rs145827824-G	0.011	2E-16		0.699809	[0.53-0.87] unit increase	Affymetrix [up to 8900000] (imputed)	N
829	chr6	32103748	32103749	rs145827824	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.32	NR	rs145827824-G	0.011	1E-8	(women)	0.797658	[0.53-1.07] unit increase	Affymetrix [up to 8900000] (imputed)	N
829	chr6	32103748	32103749	rs145827824	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.32	NR	rs145827824-G	0.011	1E-7	(men)	0.57225	[0.36-0.78] unit increase	Affymetrix [up to 8900000] (imputed)	N
829	chr6	32107138	32107139	rs3096698	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL18RAP	5,360 Icelandic ancestry individuals	NA	6p21.32		rs3096698-T	0.4309	1E-12		0.134973	[0.098-0.172] unit decrease	Illumina [7506463] (imputed)	N
829	chr6	32107138	32107139	rs3096698	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	6p21.32	PRRT1	rs3096698-T	0.3668	6E-15		0.2611	[0.2-0.33] mmHg decrease	Affymetrix [NR] (imputed)	N
829	chr6	32109978	32109979	rs204999	23022100	Franceschini N	2012-09-26	Am J Hum Genet	Discovery and fine mapping of serum protein loci through transethnic meta-analysis.	Serum total protein level	Up to 25,539 European ancestry individuals, 10,168 Japanese ancestry individuals	NA		intergenic	rs204999-A	0.74	4E-11		0.0266	[0.019-0.034] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
829	chr6	32109978	32109979	rs204999	23022100	Franceschini N	2012-09-26	Am J Hum Genet	Discovery and fine mapping of serum protein loci through transethnic meta-analysis.	Serum total protein level	Up to 25,539 European ancestry individuals, 10,168 Japanese ancestry individuals	NA		intergenic	rs204999-A	0.74	3E-9	(EA)	0.025	[0.017-0.033] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
829	chr6	32109978	32109979	rs204999	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA		intergenic	rs204999-G	0.2643	9E-40		2.44	[NR]	Illumina [242824]	N
829	chr6	32110513	32110514	rs77619009	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.32		rs77619009-A	0.944	4E-16				Affymetrix [10369434] (imputed)	N
829	chr6	32110582	32110583	rs3130277	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	PRRT1	rs3130277-C	NR	2E-8		0.0208014	[0.014-0.028] unit decrease	Affymetrix [323858] (imputed)	N
829	chr6	32111023	32111024	rs565981183	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs565981183-CA	0.876	1E-11		1.192	[1.14-1.24]	Illumina [11270530] (imputed)	N
829	chr6	32112625	32112626	rs3130279	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL21	5,363 Icelandic ancestry individuals	NA	6p21.32		rs3130279-A	0.207	5E-14		0.174333	[0.13-0.22] unit increase	Illumina [7506463] (imputed)	N
830	chr6	32114514	32114515	rs9296009	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	PRRT1	rs9296009-T	0.216	7E-13	(UDP-N-acetylhexosamine pyrophosphorylase, UAP1.13580.2.3)	0.21	[0.15-0.27] unit decrease	Affymetrix [10572788] (imputed)	N
830	chr6	32114514	32114515	rs9296009	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	PRRT1	rs9296009-T	0.216	3E-37	(Rac GTPase-activating protein 1, RACGAP1.13587.10.3)	0.37	[0.31-0.43] unit decrease	Affymetrix [10572788] (imputed)	N
830	chr6	32114514	32114515	rs9296009	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	PRRT1	rs9296009-T	0.196796488164359	4E-6	(IGP18)	0.1779	[0.1-0.25] unit decrease	Illumina [~ 2500000] (imputed)	N
830	chr6	32114514	32114515	rs9296009	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	PRRT1	rs9296009-T	0.19676420855615	4E-6	(IGP25)	0.1773	[0.1-0.25] unit decrease	Illumina [~ 2500000] (imputed)	N
830	chr6	32114514	32114515	rs9296009	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	PRRT1	rs9296009-T	0.196432337204109	4E-8	(IGP23)	0.2111	[0.14-0.29] unit decrease	Illumina [~ 2500000] (imputed)	N
830	chr6	32115221	32115222	rs28732178	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	6p21.32	NR	rs28732178-?	NR	8E-11		6.496	NR z score decrease	Illumina [at least 830937] (imputed)	N
830	chr6	32119897	32119898	rs3131283	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	PRRT1	rs3131283-T	NR	4E-16		0.0353753	[0.027-0.044] unit increase	Affymetrix [323123] (imputed)	N
830	chr6	32120714	32120715	rs1053924	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:0_[M+H]1+/Phosphatidylethanolamine_35:0_[M+H]1+/Phosphatidate_37:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	6p21.32		rs1053924-T	NR	3E-10		0.0786544	[0.054-0.103] unit decrease	Affymetrix [87696910] (imputed)	N
830	chr6	32122471	32122472	rs3096696	25987655	Fernandez CA	2015-05-18	Blood	Genome-wide analysis links NFATC2 with asparaginase hypersensitivity.	Asparaginase hypersensitivity in acute lymphoblastic leukemia	3,126 child cases	182 child cases	6p21.32	PPT2	rs3096696-A		4E-6		1.478		Affymetrix [NR]	N
830	chr6	32127476	32127477	rs3134950	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:0_[M+H]1+/Phosphatidylethanolamine_35:0_[M+H]1+/Phosphatidate_37:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	6p21.32		rs3134950-C	NR	3E-16		0.100569	[0.076-0.125] unit decrease	Affymetrix [87696910] (imputed)	N
830	chr6	32127476	32127477	rs3134950	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	6p21.32	EGFL8	rs3134950-A	0.622	1E-8		0.01510972	[0.0099-0.0203] unit decrease	Affymetrix [~ 11515000] (imputed)	N
830	chr6	32127476	32127477	rs3134950	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	6p21.32	PPT2	rs3134950-A	0.624	1E-10		0.0079	[0.0055-0.0103] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
830	chr6	32127476	32127477	rs3134950	24823311	Guan W	2014-05-13	Circ Cardiovasc Genet	Genome-wide association study of plasma N6 polyunsaturated fatty acids within the cohorts for heart and aging research in genomic epidemiology consortium.	Plasma omega-6 polyunsaturated fatty acid levels (adrenic acid)	8,631 European ancestry individuals	NA	6p21.32	AGPAT1, PPT2	rs3134950-A	0.625	6E-6		0.01	[NR] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
830	chr6	32127476	32127477	rs3134950	23362303	Wu JH	2013-01-29	Circ Cardiovasc Genet	Genome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortium.	Oleic acid (18:1n-9) levels	8,961 European ancestry individuals		6p21.32	EGFL8, AGPAT1, PPT2	rs3134950-A	NR	1E-6		0.0945	unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
830	chr6	32128393	32128394	rs9267812	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.32		rs9267812-C	0.865	1E-35				Affymetrix [10369434] (imputed)	N
830	chr6	32128393	32128394	rs9267812	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.32		rs9267812-C	0.865	2E-29				Affymetrix [10369434] (imputed)	N
830	chr6	32128393	32128394	rs9267812	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.32		rs9267812-C	0.865	7E-20				Affymetrix [10369434] (imputed)	N
830	chr6	32128393	32128394	rs9267812	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.32		rs9267812-C	0.865	9E-41				Affymetrix [10369434] (imputed)	N
830	chr6	32128393	32128394	rs9267812	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p21.32		rs9267812-C	0.865	8E-22				Affymetrix [10369434] (imputed)	N
830	chr6	32128393	32128394	rs9267812	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	6p21.32	PPT2	rs9267812-T	0.135386	2E-6		0.021886	[0.013-0.031] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
830	chr6	32128393	32128394	rs9267812	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	6p21.32	PPT2	rs9267812-T	0.132705	3E-9		0.022969	[0.015-0.031] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
830	chr6	32128393	32128394	rs9267812	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs9267812-T	0.136	1E-30	(Rac GTPase-activating protein 1, RACGAP1.13587.10.3)	0.4	[0.32-0.48] unit decrease	Affymetrix [10572788] (imputed)	N
830	chr6	32134509	32134510	rs3096697	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.32	EGFL8	rs3096697-T	0.2054	1E-41		2.58	[NR]	Illumina [242824]	N
830	chr6	32136546	32136547	rs1061808	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for LDL particles	115,082 European ancestry individuals	NA	6p21.32		rs1061808-T	0.3719	6E-9		0.0242981	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
830	chr6	32136546	32136547	rs1061808	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	6p21.32		rs1061808-G	NR	1E-22		0.0181	[0.015-0.022] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
830	chr6	32136546	32136547	rs1061808	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:0_[M+H]1+/Phosphatidylethanolamine_35:0_[M+H]1+/Phosphatidate_37:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	6p21.32		rs1061808-T	NR	1E-15		0.0960224	[0.072-0.12] unit decrease	Affymetrix [87696910] (imputed)	N
830	chr6	32136546	32136547	rs1061808	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	6p21.32	AGPAT1	rs1061808-T	0.3698	1E-23		0.25	[0.2-0.3] mmHg decrease	Affymetrix [NR] (imputed)	N
830	chr6	32136546	32136547	rs1061808	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs1061808-G	0.631	8E-37	(Tenascin-X, TNXB.5698.60.3)	0.32	[0.28-0.36] unit increase	Affymetrix [10572788] (imputed)	N
830	chr6	32136546	32136547	rs1061808	22359512	Demirkan A	2012-02-16	PLoS Genet	Genome-wide association study identifies novel loci associated with circulating phospho- and sphingolipid concentrations.	Phospholipid levels (plasma)	4,034 European ancestry individuals	NA	6p21.32	AGPAT1	rs1061808-?	NR	8E-10	(proportions)	0.9	[NR] % increase	Illumina [NR] (imputed)	N
830	chr6	32138544	32138545	rs3130283	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Angina pectoris	30,025 European ancestry cases, 440,906 European ancestry controls, 14,007 East Asian ancestry cases, 145,158 East Asian ancestry controls	NA	6p21.32		rs3130283-C	NR	3E-11		0.0776	[0.055-0.101] unit increase	Affymetrix, Illumina [25842036] (imputed)	N
830	chr6	32138544	32138545	rs3130283	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	6p21.32	NR	rs3130283-C	0.8533	6E-27		0.0617	[0.051-0.073] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
830	chr6	32138616	32138617	rs114004994	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IFNAR1	5,357 Icelandic ancestry individuals	NA	6p21.32		rs114004994-C	0.04783	3E-14		0.323386	[0.24-0.41] unit decrease	Illumina [7506463] (imputed)	N
830	chr6	32138616	32138617	rs114004994	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA	6p21.32	PPT2-EGFL8	rs114004994-?	NR	5E-9		1.80656	[NR] unit decrease	Affymetrix [NR] (imputed)	N
830	chr6	32140486	32140487	rs3130284	25987655	Fernandez CA	2015-05-18	Blood	Genome-wide analysis links NFATC2 with asparaginase hypersensitivity.	Asparaginase hypersensitivity in acute lymphoblastic leukemia	3,126 child cases	182 child cases	6p21.32	AGPAT1	rs3130284-C	NR	7E-6		1.464		Affymetrix [NR]	N
830	chr6	32145706	32145707	rs2269423	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:0_[M+H]1+/Phosphatidylethanolamine_35:0_[M+H]1+/Phosphatidate_37:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	6p21.32		rs2269423-A	NR	9E-17		0.0987433	[0.075-0.122] unit decrease	Affymetrix [87696910] (imputed)	N
830	chr6	32146491	32146492	rs3134945	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.32	RNF5	rs3134945-T	0.2049	2E-40		2.54	[NR]	Illumina [242824]	N
830	chr6	32147048	32147050	rs41315238	34782693	Yamada M	2021-11-15	Commun Biol	Genetic loci for lung function in Japanese adults with adjustment for exhaled nitric oxide levels as airway inflammation indicator.	Lung function (FEV1/FVC)	14,061 Japanese ancestry individuals	5,661 Japanese ancestry individuals	6p21.32		rs41315238-A	0.1513	7E-24		0.1542	[0.12-0.18] unit increase	Affymetrix [8587571] (imputed)	N
830	chr6	32147156	32147157	rs41268928	26083729	Maruthur NM	2015-06-17	PLoS One	Genetics of Plasma Soluble Receptor for Advanced Glycation End-Products and Cardiovascular Outcomes in a Community-based Population: Results from the Atherosclerosis Risk in Communities Study.	Advanced glycation end-product levels	581 Black individuals, 1,737 European ancestry individuals	NA	6p21.32	RNF5, NOTCH4, AGER	rs41268928-C	0.04	3E-16	(EA)	0.69	unit decrease	Affymetrix [up to 9100000] (imputed)	N
830	chr6	32147760	32147761	rs3134943	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.32	RNF5	rs3134943-T	NR	2E-7	(women)	0.0338184	[0.021-0.047] unit increase	Illumina [13520550] (imputed)	N
830	chr6	32148030	32148031	rs1062070	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Waist circumference variance	347,158 European ancestry individuals	NA	6p21.32	RNF5	rs1062070-?	NR	7E-12				NR [5554549] (imputed)	N
830	chr6	32148030	32148031	rs1062070	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Waist circumference	347,158 European ancestry individuals	NA	6p21.32	RNF5	rs1062070-?	NR	6E-10				NR [5554549] (imputed)	N
830	chr6	32149259	32149260	rs2071288	26083729	Maruthur NM	2015-06-17	PLoS One	Genetics of Plasma Soluble Receptor for Advanced Glycation End-Products and Cardiovascular Outcomes in a Community-based Population: Results from the Atherosclerosis Risk in Communities Study.	Advanced glycation end-product levels	581 Black individuals, 1,737 European ancestry individuals	NA	6p21.32	AGER, RNF5, NOTCH4	rs2071288-T	0.1	2E-8	(Blacks)	0.56	unit decrease	Affymetrix [up to 9100000] (imputed)	N
830	chr6	32149800	32149801	rs9391855	33766948	Zhu Z	2021-03-25	Eur Respir J	A large-scale genome-wide association analysis of lung function in the Chinese population identifies novel loci and highlights shared genetic etiology with obesity.	Lung function (FEV1/FVC)	100,285 Chinese ancestry individuals	NA	6p21.32		rs9391855-C	0.78	2E-22		0.053	unit decrease	Affymetrix [NR] (imputed)	N
830	chr6	32151442	32151443	rs2070600	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein AGER	5,368 Icelandic ancestry individuals	NA	6p21.32		rs2070600-T	0.04774	1E-31		0.516865	[0.43-0.6] unit decrease	Illumina [7506463] (imputed)	N
830	chr6	32151442	32151443	rs2070600	33909500	Moll M	2021-04-28	Am J Physiol Lung Cell Mol Physiol	A Systematic Analysis of Protein-altering Exonic Variants in Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease	up to 31,465 European ancestry cases, up to 203,688 European ancestry controls, up to 1,413 African ancestry cases, up to 6,080 African ancestry controls, up to 287 East Asian ancestry cases, up to 7,484 East Asian ancestry controls, up to 61 Hispanic cases, up to 613 Hispanic controls	NA	6p21.32	AGER	rs2070600-C	0.94	1E-16		1.19	[1.15 -1.25]	Illumina [at least 109036]	N
830	chr6	32151442	32151443	rs2070600	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs2070600-T	NR	9E-12		1.2804097	[1.19-1.38]	Affymetrix [7846216] (imputed)	N
830	chr6	32151442	32151443	rs2070600	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	6p21.32	AGER	rs2070600-C	0.94	1E-17		1.21	[1.15-1.26]	Affymetrix, Illumina [6224355] (imputed)	N
830	chr6	32151442	32151443	rs2070600	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	6p21.32	AGER	rs2070600-T	0.0629	2E-45		0.073	[0.063-0.083] unit increase	Affymetrix [19819130] (imputed)	N
830	chr6	32151442	32151443	rs2070600	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	6p21.32	AGER	rs2070600-T	0.0629	8E-15		0.0379	[0.028-0.048] unit decrease	Affymetrix [19819130] (imputed)	N
830	chr6	32151442	32151443	rs2070600	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	6p21.32	AGER	rs2070600-T	0.0629	3E-189		0.1452	[0.14-0.15] unit increase	Affymetrix [19819130] (imputed)	N
830	chr6	32151442	32151443	rs2070600	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	6p21.32	AGER	rs2070600-T	0.0629	5E-11		0.0318	[0.022-0.041] unit increase	Affymetrix [19819130] (imputed)	N
830	chr6	32151442	32151443	rs2070600	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	AGER	rs2070600-T	0.067	4E-33	(Advanced glycosylation end product-specific receptor, soluble, AGER.4125.52.2)	0.57	[0.47-0.67] unit decrease	Affymetrix [10572788] (imputed)	N
830	chr6	32151442	32151443	rs2070600	28369058	Folkersen L	2017-04-03	PLoS Genet	Mapping of 79 loci for 83 plasma protein biomarkers in cardiovascular disease.	Blood protein levels in cardiovascular risk	3,394 European ancestry individuals	2,639 individuals	6p21.32	AGER	rs2070600-T	0.04	5E-12		0.37	unit decrease	Illumina [5270624] (imputed)	N
830	chr6	32151442	32151443	rs2070600	28166215	Hobbs BD	2017-02-06	Nat Genet	Genetic loci associated with chronic obstructive pulmonary disease overlap with loci for lung function and pulmonary fibrosis.	Chronic obstructive pulmonary disease	11,157 European ancestry cases, 36,699 European ancestry controls, 1,142 African American cases, 2,380 African American controls, 199 Korean ancestry cases, 6,741 Korean ancestry controls, 52 Hispanic cases, 548 Hispanic controls.	12,051 European ancestry cases, 11,111 European ancestry controls, 153 Korean ancestry cases, 205 Korean ancestry controls.	6p21.32	AGER	rs2070600-C	0.95	6E-10		1.24	[1.16-1.32]	Affymetrix, Illumina [NR] (imputed)	N
830	chr6	32151442	32151443	rs2070600	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FEV1/FVC)	48,943 European ancestry individuals	57,176 European ancestry individuals, 38,199 individuals.	6p21.32	AGER	rs2070600-T	0.0634	3E-25		0.14	[0.11-0.17] unit increase	Affymetrix [27624732] (imputed)	N
830	chr6	32151442	32151443	rs2070600	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	6p21.32	NR	rs2070600-?		3E-22	(AGER)	0.7091	[NR] unit decrease	Illumina [NR]	N
830	chr6	32151442	32151443	rs2070600	26030696	Cho MH	2015-06-01	Am J Respir Crit Care Med	A Genome-Wide Association Study of Emphysema and Airway Quantitative Imaging Phenotypes.	Percentage gas trapping	3,243 European ancestry chronic obstructive pulmonary disease cases, 901 African American chronic obstructive pulmonary disease cases,  3,062 European ancestry controls, 2,132 African American controls	NA	6p21.32	AGER	rs2070600-T	NR	4E-9	(All)	0.23	[0.15-0.31] unit decrease	Illumina [6900000] (imputed)	N
830	chr6	32151442	32151443	rs2070600	26030696	Cho MH	2015-06-01	Am J Respir Crit Care Med	A Genome-Wide Association Study of Emphysema and Airway Quantitative Imaging Phenotypes.	Emphysema imaging phenotypes	5,385 European ancestry chronic obstructive pulmonary disease cases, 901 African American chronic obstructive pulmonary disease cases, 3,613 European ancestry controls, 2,132 African American controls	NA	6p21.32	AGER	rs2070600-T	NR	5E-9	(%LAA-950, All)	0.14	[-0.07560-0.35560] unit decrease	Illumina [7600000] (imputed)	N
830	chr6	32151442	32151443	rs2070600	23284291	Hancock DB	2012-12-20	PLoS Genet	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (smoking interaction)	50,047 European ancestry individuals	NA	6p21.32	AGER	rs2070600-?	NR	1E-21	(FEV1/FVC, Pack-years)			NR [~ 2500000] (imputed)	N
830	chr6	32151442	32151443	rs2070600	20010835	Hancock DB	2009-12-13	Nat Genet	Meta-analyses of genome-wide association studies identify multiple loci associated with pulmonary function.	Pulmonary function	20,890 European ancestry individuals	16,178 European ancestry individuals	6p21.32	AGER, PPT2	rs2070600-T	0.04	3E-14	(FEV1/FVC)	1.0	[NR] % increase	Affymetrix, Illumina [2534500] (imputed)	N
830	chr6	32151442	32151443	rs2070600	20010834	Repapi E	2009-12-13	Nat Genet	Genome-wide association study identifies five loci associated with lung function.	Pulmonary function	20,288 European ancestry individuals	up to 54,276 European ancestry individuals	6p21.32	AGER	rs2070600-T	0.06	3E-15	(FEV1/FVC)	0.088	[0.066-0.110] s.d. increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
830	chr6	32152386	32152387	rs1800624	33766948	Zhu Z	2021-03-25	Eur Respir J	A large-scale genome-wide association analysis of lung function in the Chinese population identifies novel loci and highlights shared genetic etiology with obesity.	Lung function (FEV1/FVC)	100,285 Chinese ancestry individuals	NA	6p21.32		rs1800624-A	0.87	3E-9		0.039	unit increase	Affymetrix [NR] (imputed)	N
830	chr6	32152441	32152442	rs1800625	26876947	Saito T	2016-02-11	Biol Psychiatry	Pharmacogenomic Study of Clozapine-Induced Agranulocytosis/Granulocytopenia in a Japanese Population.	Clozapine-induced agranulocytosis/granulocytopenia in treatment-resistant schizophrenia	50 Japanese ancestry cases, 2905 Japanese ancestry controls	NA	6p21.32	ZDHHC20P2, HCG25, HCG26, LST1, MICA, FKBPL, AGPAT1, PBX2, NOTCH4, C6orf10, MHC, HLA-X, HCP5, MSH5, C6orf26	rs1800625-G	0.084	3E-9		3.78	[3.34-4.22]	Illumina [522694]	N
830	chr6	32152441	32152442	rs1800625	26546620	Xu CF	2015-11-06	Clin Cancer Res	HLA-B*57:01 Confers Susceptibility to Pazopanib-Associated Liver Injury in Patients with Cancer.	Response to Pazopanib in cancer (hepatotoxicity)	Up to 844 European ancestry cases, up to 325 Asian ancestry cases, up to 19 cases	Up to 811 European ancestry cases, up to 114 Asian ancestry cases, up to 77 cases	6p21.32	AGER	rs1800625-G	NR	8E-9	(Time to ALT>3 x upper limit of normal event)	1.8	[1.5-2.1]	Illumina [6736730] (imputed)	N
830	chr6	32153340	32153341	rs201026476	32488134	Auckland K	2020-06-02	Sci Rep	The Human Leukocyte Antigen Locus and Rheumatic Heart Disease Susceptibility in South Asians and Europeans.	Rheumatic heart disease	510 Northern Indian cases, 344 Northern Indian controls, 162 Fijian Indian cases, 147 Fijian Indian controls	150 European ancestry cases, 1,309 European ancestry controls	6p21.32	PBX2	rs201026476-?		3E-10		1.81	[1.51-2.18]	Illumina [6925553] (imputed)	N
830	chr6	32153405	32153406	rs169504	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	PBX2, XXbac-BPG300A18.13	rs169504-A	NR	4E-9		0.0216001	[0.014-0.029] unit decrease	Affymetrix [319769] (imputed)	N
830	chr6	32153405	32153406	rs169504	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	PBX2, XXbac-BPG300A18.13	rs169504-A	NR	3E-12		0.0279533	[0.02-0.036] unit increase	Affymetrix [323123] (imputed)	N
830	chr6	32153405	32153406	rs169504	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Anxiety	at least 23,606 European ancestry cases, at least 113,351 European ancestry controls	624,615 European ancestry cases, 1,310,854 European ancestry controls	6p21.32	PBX2, XXbac, BPG300A18.13	rs169504-C	0.1481	5E-28		0.03352553	[0.027-0.04] unit increase	NR [9417325] (imputed)	N
830	chr6	32153405	32153406	rs169504	29899525	Klimentidis YC	2018-06-13	Int J Obes (Lond)	Genome-wide association study of habitual physical activity in over 377,000 UK Biobank participants identifies multiple variants including CADM2 and APOE.	Moderate to vigorous physical activity levels	377,234 European ancestry individuals	NA	6p21.32	PBX2	rs169504-C	0.81	5E-11	(model 2)	0.018	unit increase	Affymetrix [11800000] (imputed)	N
830	chr6	32153405	32153406	rs169504	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p21.32	NR	rs169504-?	NR	5E-9		0.0694	[0.046-0.093] unit increase	Illumina [at least 560000] (imputed)	N
830	chr6	32154284	32154285	rs204995	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	6p21.32	NR	rs204995-A	0.736056	3E-13		0.0272612	[0.02-0.034] unit increase	Affymetrix [16577424] (imputed)	N
830	chr6	32154997	32154998	rs204994	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RACGAP1	5,360 Icelandic ancestry individuals	NA	6p21.32		rs204994-T	0.1627	4E-63		0.423554	[0.37-0.47] unit increase	Illumina [7506463] (imputed)	N
830	chr6	32155580	32155581	rs204993	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Receptor for advanced glycosylation end products levels	21,758 European ancestry individuals	9,173 individuals	6p21.32		rs204993-A	0.74	1E-48		0.1449	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
830	chr6	32155580	32155581	rs204993	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 142,336 Japanese ancestry controls	NA	6p21.32	PBX2	rs204993-?	NR	6E-9		0.0600478	[0.04-0.08] unit decrease	Illumina [19707525] (imputed)	N
830	chr6	32155580	32155581	rs204993	21804548	Hirota T	2011-07-31	Nat Genet	Genome-wide association study identifies three new susceptibility loci for adult asthma in the Japanese population.	Asthma	1,532 Japanese ancestry cases, 3,304 Japanese ancestry controls	5,639 Japanese ancestry cases, 24,608 Japanese ancestry controls	6p21.32	PBX2	rs204993-A	0.58	2E-15		1.17	[1.12-1.21]	Illumina [458847]	N
830	chr6	32157363	32157364	rs2856437	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cervical cancer	6,563 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs2856437-A	0.063203	1E-15		1.3032712	NR	Affymetrix [7846216] (imputed)	N
830	chr6	32158318	32158319	rs176095	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Atopic dermatitis	2,079 European ancestry cases, 3,867 European ancestry controls	NA	6p21.32	GPSM3	rs176095-G	NR	3E-7		1.3020833	[1.18-1.44]	Affymetrix, Illumina, Perlegen [up to 5493100] (imputed)	N
830	chr6	32158318	32158319	rs176095	23042114	Hirota T	2012-10-07	Nat Genet	Genome-wide association study identifies eight new susceptibility loci for atopic dermatitis in the Japanese population.	Atopic dermatitis	1,472 Japanese ancestry cases, 7,971 Japanese ancestry controls	1,856 Japanese ancestry cases, 7,021 Japanese ancestry controls	6p21.32	GPSM3	rs176095-T	0.81	8E-20		1.4	[1.30-1.51]	Illumina [606164]	N
830	chr6	32159955	32159956	rs3134605	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	GPSM3	rs3134605-C	NR	8E-9		0.0195758	[0.013-0.026] unit decrease	Affymetrix [319769] (imputed)	N
830	chr6	32159955	32159956	rs3134605	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	GPSM3	rs3134605-C	NR	3E-8		0.0188346	[0.012-0.025] unit decrease	Affymetrix [319769] (imputed)	N
830	chr6	32159955	32159956	rs3134605	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	GPSM3	rs3134605-C	NR	1E-8		0.0196385	[0.013-0.026] unit decrease	Affymetrix [321169] (imputed)	N
830	chr6	32159955	32159956	rs3134605	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	6p21.32	GPSM3	rs3134605-T	0.7974	7E-17		0.0033	[0.0025-0.0041] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
830	chr6	32160152	32160153	rs2269420	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Pancreatic cancer	768 White British ancestry cases, 264,559 White British ancestry controls	NA	6p21.32		rs2269420-?	NR	5E-6		550.195	[547.48-552.91]	NR [663102]	N
830	chr6	32160152	32160153	rs2269420	28031287	Sasayama D	2016-11-26	Hum Mol Genet	Genome-wide quantitative trait loci mapping of the human cerebrospinal fluid proteome.	Cerebrospinal fluid biomarker levels	133 Japanese ancestry individuals.	NA	6p21.32	NR	rs2269420-?	NR	3E-9	(Complement factor B)			Illumina [514227]	N
830	chr6	32161395	32161396	rs3132940	32534018	Liu X	2020-06-10	Brain Behav Immun	Genetic factors underlying the bidirectional relationship between autoimmune and mental disorders - findings from a Danish population-based study.	Autoimmune traits	1,383 Danish ancestry cases, 62,656 Danish ancestry controls	NA	6p21.32	NR	rs3132940-T	0.15	1E-15		0.62	[0.55-0.70]	NR [7721839] (imputed)	N
830	chr6	32161395	32161396	rs3132940	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (non-Lofgren's syndrome without extrapulmonary manifestations)	451 Swedish ancestry cases, 2,086 Swedish ancestry controls	NA	6p21.32	GPSM3, NOTCH4, AGER, MICB, NFKBIL1, LTA, NCR3, AIF1, TNXB, CREBL1, FKBPL, PRRT1	rs3132940-A	0.203	7E-6		1.531	[1.282-1.829]	Illumina [118177]	N
830	chr6	32161429	32161430	rs204990	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Scarlet fever	6,812 European ancestry cases, 113,837 European ancestry controls	NA	6p21.32	NR	rs204990-?	NR	7E-9		0.1298	[0.086-0.173] unit decrease	Illumina [at least 560000] (imputed)	N
830	chr6	32163747	32163748	rs13215567	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6p21.32	GPSM3, NOTCH4	rs13215567-A	0.049	1E-6	(IGFBP-3 )	0.03	[NR] ng/mL increase	Illumina [899892]	N
830	chr6	32165443	32165444	rs2071278	23028341	Yang X	2012-09-13	PLoS Genet	Genome-wide association study for serum complement C3 and C4 levels in healthy Chinese subjects.	Complement C3 and C4 levels	1,999 Han Chinese ancestry male individuals	1,496 Han Chinese ancestry male individuals	6p21.32	HLA-DRA	rs2071278-G	0.27	4E-72	(Serum level of C4)	0.13	[0.11-0.15] g/L decrease	Illumina [1940245] (imputed)	N
830	chr6	32166383	32166384	rs8192575	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	NOTCH4	rs8192575-G	NR	3E-14		0.0413468	[0.031-0.052] unit increase	Affymetrix [319769] (imputed)	N
830	chr6	32166383	32166384	rs8192575	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	NOTCH4	rs8192575-G	NR	1E-14		0.0418274	[0.031-0.052] unit increase	Affymetrix [319769] (imputed)	N
830	chr6	32168770	32168771	rs3134942	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.32	NOTCH4, GPSM3	rs3134942-T	0.1076459	1E-16	(EA, MHC class I polypeptide-related sequence A)	0.5791	[0.44-0.71] unit increase	Affymetrix [509946]	N
830	chr6	32170406	32170407	rs9267822	33941608	Khan A	2021-05-03	J Am Soc Nephrol	Medical Records-Based Genetic Studies of the Complement System.	Complement C4 levels	3,247 European ancestry individuals, 600 African ancestry individuals, 151 East Asian ancestry individuals	NA	6p21.32	C4	rs9267822-C	0.05	6E-7	(AA)	0.64	[0.40-0.87] unit increase	NR [NR] (imputed)	N
830	chr6	32170406	32170407	rs9267822	33941608	Khan A	2021-05-03	J Am Soc Nephrol	Medical Records-Based Genetic Studies of the Complement System.	Complement C4 levels	3,247 European ancestry individuals, 600 African ancestry individuals, 151 East Asian ancestry individuals	NA	6p21.32	C4	rs9267822-C	0.02	6E-17		0.65	[0.51-0.78] unit increase	NR [NR] (imputed)	N
830	chr6	32170406	32170407	rs9267822	33941608	Khan A	2021-05-03	J Am Soc Nephrol	Medical Records-Based Genetic Studies of the Complement System.	Complement C4 levels	3,247 European ancestry individuals, 600 African ancestry individuals, 151 East Asian ancestry individuals	NA	6p21.32	C4	rs9267822-C	0.01	7E-9	(EA)	0.61	[0.41-0.80] unit increase	NR [NR] (imputed)	N
830	chr6	32171074	32171075	rs3132935	23894747	Aberg KA	2013-02-01	JAMA Psychiatry	A comprehensive family-based replication study of schizophrenia genes.	Schizophrenia	11,185 European ancestry cases, 10,768 European ancestry controls	1,262 African American ancestry individuals, 2,740 European ancestry individuals, 2,296 Asian ancestry individuals	6p21.32	NOTCH4	rs3132935-?	0.82	5E-7	(EA)	1.25	[NR]	NR [1085772] (imputed)	N
830	chr6	32171074	32171075	rs3132935	23894747	Aberg KA	2013-02-01	JAMA Psychiatry	A comprehensive family-based replication study of schizophrenia genes.	Schizophrenia	11,185 European ancestry cases, 10,768 European ancestry controls	1,262 African American ancestry individuals, 2,740 European ancestry individuals, 2,296 Asian ancestry individuals	6p21.32	NOTCH4	rs3132935-?	0.82	3E-7		1.25	[NR]	NR [1085772] (imputed)	N
830	chr6	32171682	32171683	rs2071277	22694956	Cipriani V	2012-06-13	Hum Mol Genet	Genome-wide association study of age-related macular degeneration identifies associated variants in the TNXB-FKBPL-NOTCH4 region of chromosome 6p21.3.	Age-related macular degeneration	893 European ancestry cases, 2,199 European ancestry controls	1,411 European ancestry cases, 1,431 European ancestry controls	6p21.32	NOTCH4	rs2071277-C	0.219	2E-11		1.3	[1.20-1.41]	Illumina [2272849] (imputed)	N
830	chr6	32172992	32172993	rs3131296	19571808	Stefansson H	2009-07-01	Nature	Common variants conferring risk of schizophrenia.	Schizophrenia	2,663 European ancestry cases, 13,498 European ancestry controls	10,282 European ancestry cases, 21,093 European ancestry controls	6p21.32	MHC, NOTCH4	rs3131296-G	0.87	2E-10		1.19	[NR]	Illumina [314868]	N
830	chr6	32173237	32173238	rs9267823	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6p21.32	NOTCH4	rs9267823-C	0.252	3E-12		0.018297182	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
830	chr6	32173598	32173599	rs138753323	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.32		rs138753323-C	0.02776400000000001	7E-13		1.0961492	[1.06-1.12]	Affymetrix, Illumina [9851866] (imputed)	N
830	chr6	32174047	32174048	rs2849017	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	6p21.32	NOTCH4	rs2849017-G	0.0713240000000001	2E-10		0.027348002	[0.019-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
830	chr6	32174047	32174048	rs2849017	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	6p21.32	NOTCH4	rs2849017-G	0.071334	5E-15		0.033472747	[0.025-0.042] unit decrease	Affymetrix [93095623] (imputed)	N
830	chr6	32174956	32174957	rs3130290	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of saturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	6p21.32		rs3130290-T	0.396568	2E-14		0.0317416	[0.024-0.04] unit decrease	NR [11722792] (imputed)	N
830	chr6	32176210	32176211	rs206017	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:0_[M+H]1+/Phosphatidylethanolamine_35:0_[M+H]1+/Phosphatidate_37:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	6p21.32		rs206017-G	NR	2E-10		0.0746241	[0.052-0.098] unit decrease	Affymetrix [87696910] (imputed)	N
830	chr6	32176781	32176782	rs3132947	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Hip circumference variance	346,781 European ancestry individuals	NA	6p21.32	GPSM3	rs3132947-?	NR	5E-11				NR [5554549] (imputed)	N
830	chr6	32176781	32176782	rs3132947	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Hip circumference	346,781 European ancestry individuals	NA	6p21.32	GPSM3	rs3132947-?	NR	3E-24				NR [5554549] (imputed)	N
830	chr6	32176781	32176782	rs3132947	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Body mass index variance	346,393 European ancestry individuals	NA	6p21.32	GPSM3	rs3132947-?	NR	2E-13				NR [5554549] (imputed)	N
830	chr6	32176781	32176782	rs3132947	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Body mass index	346,393 European ancestry individuals	NA	6p21.32	GPSM3	rs3132947-?	NR	9E-15				NR [5554549] (imputed)	N
830	chr6	32179708	32179709	rs16869834	33941608	Khan A	2021-05-03	J Am Soc Nephrol	Medical Records-Based Genetic Studies of the Complement System.	Complement C4 levels	3,247 European ancestry individuals, 600 African ancestry individuals, 151 East Asian ancestry individuals	NA	6p21.32	C4	rs16869834-A	0.05	8E-20		0.44	[0.36-0.51] unit increase	NR [NR] (imputed)	N
830	chr6	32179708	32179709	rs16869834	33941608	Khan A	2021-05-03	J Am Soc Nephrol	Medical Records-Based Genetic Studies of the Complement System.	Complement C4 levels	3,247 European ancestry individuals, 600 African ancestry individuals, 151 East Asian ancestry individuals	NA	6p21.32	C4	rs16869834-A	0.05	2E-18	(EA)	0.47	[0.37-0.56] unit increase	NR [NR] (imputed)	N
830	chr6	32179708	32179709	rs16869834	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs16869834-G	0.047	5E-27	(Complement C4, C4A.C4B.4481.34.2)	0.62	[0.5-0.74] unit decrease	Affymetrix [10572788] (imputed)	N
830	chr6	32179895	32179896	rs2071286	25030430	Zignego AL	2014-07-17	Genes Immun	Genome-wide association study of hepatitis C virus- and cryoglobulin-related vasculitis.	Mixed cryoglobulinemia vasculitis in chronic hepatitis C infection	356 European ancestry cases, 447 European ancestry controls	92 European ancestry cases, 179 European ancestry controls	6p21.32	NOTCH4	rs2071286-?	0.29	2E-8		2.15	[NR]	Illumina [899641]	N
830	chr6	32180145	32180146	rs3131294	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	NOTCH4	rs3131294-A	NR	1E-10		0.025777	[0.018-0.034] unit increase	Affymetrix [321016] (imputed)	N
830	chr6	32180240	32180241	rs206019	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	NOTCH4	rs206019-T	NR	5E-13		0.0300963	[0.022-0.038] unit increase	Affymetrix [319769] (imputed)	N
830	chr6	32180240	32180241	rs206019	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	NOTCH4	rs206019-T	NR	2E-8		0.0236482	[0.015-0.032] unit increase	Affymetrix [321114] (imputed)	N
830	chr6	32180240	32180241	rs206019	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	NOTCH4	rs206019-T	NR	2E-9		0.0253993	[0.017-0.034] unit increase	Affymetrix [321169] (imputed)	N
830	chr6	32181181	32181182	rs206016	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	NOTCH4	rs206016-A	NR	2E-13		0.030587	[0.022-0.039] unit increase	Affymetrix [319769] (imputed)	N
830	chr6	32181516	32181517	rs41270472	28334935	Raffield LM	2017-05-15	Hum Mol Genet	Genome-wide association study of iron traits and relation to diabetes in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL): potential genomic intersection of iron and glucose regulation?	Iron status biomarkers (iron levels)	12,580 Hispanic/Latino individuals	NA	6p21.32	NOTCH4	rs41270472-A	NR	8E-7		0.286	[0.17-0.4] unit decrease	Illumina [27700000] (imputed)	N
830	chr6	32184344	32184345	rs404860	21804548	Hirota T	2011-07-31	Nat Genet	Genome-wide association study identifies three new susceptibility loci for adult asthma in the Japanese population.	Asthma	1,532 Japanese ancestry cases, 3,304 Japanese ancestry controls	5,639 Japanese ancestry cases, 24,608 Japanese ancestry controls	6p21.32	NOTCH4	rs404860-A	0.50	4E-23		1.21	[1.16-1.25]	Illumina [458847]	N
830	chr6	32184704	32184705	rs3134798	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C4A;C4B	5,362 Icelandic ancestry individuals	NA	6p21.32		rs3134798-G	0.3666	1E-47		0.277923	[0.24-0.32] unit increase	Illumina [7506463] (imputed)	N
830	chr6	32186244	32186245	rs438475	26503763	Song J	2015-10-27	Mol Psychiatry	Genome-wide association study identifies SESTD1 as a novel risk gene for lithium-responsive bipolar disorder.	Objective response to lithium treatment in bipolar disorder	323 European ancestry responder cases, 853 European ancestry non-responder cases	NA	6p21.32	NOTCH4	rs438475-A	0.12	2E-6		2.04	[NR]	Affymetrix, Illumina [> 8000000] (imputed)	N
830	chr6	32186871	32186872	rs2256594	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (glucocorticoids)	13,102 East Asian ancestry cases, 165,624 East Asian ancestry controls	NA	6p21.32		rs2256594-G	0.381444507	1E-9		0.081218176	[0.055-0.107] unit decrease	Illumina [13429980] (imputed)	N
830	chr6	32187636	32187637	rs8192589	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	NOTCH4	rs8192589-T	NR	7E-14		0.0321787	[0.024-0.041] unit increase	Affymetrix [323123] (imputed)	N
830	chr6	32187721	32187722	rs431722	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Joint mobility (Beighton score)	64,143 European ancestry individuals	NA	6p21.32	NOTCH4	rs431722-?	NR	2E-12		0.08	[0.102-0.058] unit decrease	Illumina [12039492] (imputed)	N
830	chr6	32187782	32187783	rs8192590	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	6p21.32	PRRC2A	rs8192590-C	0.8421	1E-8	(S1P d16:1)	0.1004	[0.066-0.135] unit increase	Illumina [~ 47000000] (imputed)	N
830	chr6	32188382	32188383	rs422951	32771030	Tangtanatakul P	2020-08-08	Arthritis Res Ther	Meta-analysis of genome-wide association study identifies FBN2 as a novel locus associated with systemic lupus erythematosus in Thai population.	Systemic lupus erythematosus	487 Thai cases, 1,606 Thai controls	405 Thai cases, 1,590 Thai controls	6p21.32	NOTCH4	rs422951-G	0.36	7E-7		1.3345	[NR]	Illumina [421909] (imputed)	N
830	chr6	32188382	32188383	rs422951	25802187	Jiang DK	2015-04-28	Hepatology	Genetic variants in five novel loci including CFB and CD40 predispose to chronic hepatitis B.	Chronic hepatitis B infection	2,514 Chinese ancestry cases, 1,130 Chinese ancestry controls	6,600 Chinese ancestry cases, 8,127 Chinese ancestry controls	6p21.32	NOTCH4	rs422951-G	0.81	5E-16		1.27	[1.20-1.35]	Illumina [3680900] (imputed)	N
830	chr6	32188639	32188640	rs520692	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling worry	372,869 European ancestry individuals	NA	6p21.32	C4A	rs520692-T	0.289258	2E-10		6.342	unit decrease	NR [10847151] (imputed)	N
830	chr6	32188822	32188823	rs8192585	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		NOTCH4	rs8192585-?	NR	3E-10	(male)	2.46406	[NR] unit decrease	Affymetrix [NR] (imputed)	N
830	chr6	32188822	32188823	rs8192585	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		NOTCH4	rs8192585-?	NR	2E-15		2.03144	[NR] unit decrease	Affymetrix [NR] (imputed)	N
830	chr6	32189031	32189032	rs415929	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.32		rs415929-T	0.711	3E-23				Affymetrix [10369434] (imputed)	N
830	chr6	32189031	32189032	rs415929	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	6p21.32	C4A	rs415929-T	0.290043	4E-8		5.51	z score decrease	NR [10847151] (imputed)	N
830	chr6	32189987	32189990	rs35565902	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6p21.32	NOTCH4	rs35565902-C	0.29421	1E-14		0.021433193	[0.016-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
830	chr6	32189987	32189990	rs35565902	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	6p21.32	NOTCH4	rs35565902-C	0.294	2E-14		0.02999182	[0.022-0.038] unit decrease	Affymetrix [~ 2500000] (imputed)	N
830	chr6	32190027	32190028	rs3132946	23583980	Fingerlin TE	2013-04-14	Nat Genet	Genome-wide association study identifies multiple susceptibility loci for pulmonary fibrosis.	Interstitial lung disease	1,161 European ancestry cases, 4,683 European ancestry controls	876 European ancestry cases, 1,890 European ancestry controls	6p21.32	NR	rs3132946-A	0.12	8E-6		1.38	[1.21-1.57]	Illumina [439828]	N
830	chr6	32190405	32190406	rs443198	21779181	Gorlova O	2011-07-14	PLoS Genet	Identification of novel genetic markers associated with clinical phenotypes of systemic sclerosis through a genome-wide association strategy.	Systemic sclerosis	2,296 European ancestry cases, 5,172 European ancestry controls	3,175 European ancestry cases, 4,210 European ancestry controls	6p21.32	NOTCH4	rs443198-?	0.63	9E-21	(ACA positive)	1.82	[1.59-2.04]	Illumina [NR] (imputed)	N
830	chr6	32190619	32190620	rs3134931	23620142	Reiner AP	2013-04-24	Hum Mol Genet	Genome-wide and gene-centric analyses of circulating myeloperoxidase levels in the charge and care consortia.	Circulating myeloperoxidase levels (serum)	9,305 European ancestry individuals		6p21.32	HLA, NOTCH4, C2	rs3134931-T	0.73	1E-8		0.05	[0.030-0.070] unit decrease	Affymetrix, Illumina [2397181]	N
830	chr6	32191040	32191041	rs434841	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	NOTCH4	rs434841-A	NR	4E-8		0.0169017	[0.011-0.023] unit decrease	Affymetrix [319769] (imputed)	N
830	chr6	32191162	32191163	rs149361718	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.32	NR	rs149361718-A	0.01394	1E-10	(KRT10)	0.7834	NR unit increase	Illumina [1671387] (imputed)	N
830	chr6	32191338	32191339	rs3830041	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	150,068 East Asian ancestry individuals	NA	6p21.32		rs3830041-T	0.185228	9E-25		0.0457917	[0.037-0.055] unit increase	Illumina [13478956] (imputed)	N
830	chr6	32191338	32191339	rs3830041	31826910	Lu Y	2019-12-11	Cancer Epidemiol Biomarkers Prev	Identification of novel loci and new risk variant in known loci for colorectal cancer risk in East Asians.	Colorectal cancer	23,572 East Asian ancestry cases, 48,700 East Asian ancestry controls	58,131 European ancestry cases, 67,347 European ancestry controls	6p21.32		rs3830041-T	0.14	4E-9	(East Asian)	1.15	[1.10-1.21]	Affymetrix, Illumina [up to 47000000] (imputed)	N
830	chr6	32191338	32191339	rs3830041	30529582	Lu Y	2018-12-06	Gastroenterology	Large-scale Genome-wide Association Study of East Asians Identifies Loci Associated With Risk for Colorectal Cancer.	Colorectal cancer	22,775 East Asian ancestry cases, 47,731 East Asian ancestry controls	NA	6p21.32	NOTCH4	rs3830041-T	0.14	2E-8		1.16	[1.10-1.21]	Affymetrix, Illumina [up to 10700000] (imputed)	N
830	chr6	32191456	32191457	rs375244	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p21.32	NOTCH4	rs375244-A	0.28	3E-6	(Turkish)	1.57	[1.30-1.90]	Illumina [up to 547389]	N
830	chr6	32191729	32191730	rs367398	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p21.32		rs367398-G	0.694	2E-11				Affymetrix [10369434] (imputed)	N
830	chr6	32192216	32192217	rs16869875	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	Systemic lupus erythematosus	1,639 East Asian ancestry cases, 2,410 East Asian ancestry controls	NA			rs16869875-T	NR	2E-16		0.4377	[0.33-0.54] unit increase	Illumina [NR] (imputed)	N
830	chr6	32192330	32192331	rs3096702	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	6p21.32	NR	rs3096702-A	0.38	1E-11		1.06	[1.04-1.07]	Illumina [20370935] (imputed)	N
830	chr6	32192330	32192331	rs3096702	23535732	Eeles RA	2013-04-01	Nat Genet	Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array.	Prostate cancer	11,085 European ancestry cases, 11,463 European ancestry controls	19,662 European ancestry cases, 19,715 European ancestry controls	6p21.32	CYP21A2, DOM3Z, FKBPL, HLA-DRB6, HCG23, LOC10029, ATF6B, LOC100293534, AGER, LOC100507547, MIR1236, PPT2, PPT2-EGF, HLA-DRA, PPT2-EGFL8, RNF5, RNF5P1, CFB, RDBP, TNXA, TNXB, HLA-DQB1, NOTCH4, SKIV2L, STK19, GPSM3, PBX2, LOC10050, EGFL8, AGPAT1, C2, C4A, PRRT1, BTNL2, C4B, HLA-DRB5, C6orf10, HLA-DRB1, CYP21A1P, HLA-DQA1	rs3096702-A	0.4	5E-9		1.07	[1.04-1.10]	Illumina [~ 2600000] (imputed)	N
830	chr6	32194594	32194595	rs17208153	33941608	Khan A	2021-05-03	J Am Soc Nephrol	Medical Records-Based Genetic Studies of the Complement System.	Complement C4 levels	3,247 European ancestry individuals, 600 African ancestry individuals, 151 East Asian ancestry individuals	NA	6p21.32	C4	rs17208153-C	0.11	2E-11		0.24	[0.18-0.30] unit increase	NR [NR] (imputed)	N
830	chr6	32194594	32194595	rs17208153	33941608	Khan A	2021-05-03	J Am Soc Nephrol	Medical Records-Based Genetic Studies of the Complement System.	Complement C4 levels	3,247 European ancestry individuals, 600 African ancestry individuals, 151 East Asian ancestry individuals	NA	6p21.32	C4	rs17208153-C	0.08	7E-11	(EA)	0.28	[0.20-0.35] unit increase	NR [NR] (imputed)	N
830	chr6	32195250	32195251	rs9267853	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p21.32	NR	rs9267853-?	NR	3E-25		0.131	[0.11-0.16] unit increase	Illumina [at least 560000] (imputed)	N
830	chr6	32197218	32197219	rs3132948	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Bronchiectasis	2,888 European ancestry cases, 440,263 European ancestry controls, 241 East Asian ancestry cases, 161,803 East Asian ancestry controls	NA	6p21.32		rs3132948-G	NR	7E-9		0.1526	[0.1-0.2] unit decrease	Affymetrix, Illumina [25839694] (imputed)	N
830	chr6	32199143	32199144	rs377763	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Prostate cancer	7,438 White British ancestry cases, 118,206 White British ancestry controls	NA	6p21.32		rs377763-?	NR	9E-6		0.908716	[0.87-0.95]	NR [680312]	N
830	chr6	32199143	32199144	rs377763	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling nervous	373,121 European ancestry individuals	NA	6p21.32	NR	rs377763-A	0.216145	1E-10		6.43	z score decrease	NR [10847151] (imputed)	N
830	chr6	32201250	32201251	rs6941515	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on myeloid Dendritic Cell	2,872 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs6941515-T	0.5683199999999999	8E-12		0.2226	[0.16-0.29] unit decrease	Illumina [17926605] (imputed)	N
830	chr6	32201525	32201526	rs3096692	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	NOTCH4	rs3096692-G	NR	3E-12		0.0293978	[0.021-0.038] unit decrease	Affymetrix [323858] (imputed)	N
830	chr6	32201525	32201526	rs3096692	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	NOTCH4	rs3096692-G	NR	2E-10		0.0269591	[0.019-0.035] unit decrease	Affymetrix [127266] (imputed)	N
830	chr6	32201590	32201591	rs443863	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.32	NR	rs443863-?	NR	6E-9				Affymetrix [~ 8270000] (imputed)	N
830	chr6	32204819	32204820	rs9279532	31577861	Dai J	2019-10-31	Int J Cancer	Genome-wide association study of INDELs identified four novel susceptibility loci associated with lung cancer risk.	Lung cancer	20,871 European ancestry cases, 15,971 European ancestry controls, 2,331 Chinese ancestry cases, 3,077 Chinese ancestry controls	NA	6p21.32	NOTCH4	rs9279532-D	0.12	3E-7		1.11	[1.07-0.94]	Illumina [484196]	N
830	chr6	32204881	32204882	rs28732180	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p21.32	NR	rs28732180-?	NR	1E-15		0.1765	[0.13-0.22] unit increase	Illumina [at least 560000] (imputed)	N
830	chr6	32205044	32205045	rs549182	24837172	Juyal G	2014-05-16	Gut	Genome-wide association scan in north Indians reveals three novel HLA-independent risk loci for ulcerative colitis.	Ulcerative colitis	603 North Indian ancestry cases, 622 North Indian ancestry controls	733 North Indian ancestry cases, 1,148 North Indian ancestry controls	6p21.32	NOTCH4	rs549182-A	0.11	8E-10		1.59	[1.37-1.85]	Illumina [480391]	N
830	chr6	32205109	32205110	rs9267911	23266558	Yamazaki K	2012-12-21	Gastroenterology	A genome-wide association study identifies 2 susceptibility Loci for Crohn's disease in a Japanese population.	Crohn's disease	372 Japanese ancestry cases,3,389 Japanese ancestry controls	Up to 1,151 Japanese ancestry cases, up to 15,800 Japanese ancestry controls	6p21.32	PBX2, NOTCH4	rs9267911-T	0.479	3E-7		1.5	[1.29-1.76]	Illumina [4929034] (imputed)	N
830	chr6	32206487	32206488	rs3134938	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p21.32	NOTCH4	rs3134938-C	0.832	8E-7		0.076	[0.047-0.105] unit decrease	Affymetrix, Illumina [7374092] (imputed)	N
830	chr6	32206538	32206539	rs3134937	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	NOTCH4	rs3134937-T	NR	7E-9		0.0212317	[0.014-0.028] unit decrease	Affymetrix [323858] (imputed)	N
830	chr6	32207180	32207181	rs3130304	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	NOTCH4	rs3130304-A	NR	4E-8		0.0203511	[0.013-0.028] unit increase	Affymetrix [323123] (imputed)	N
830	chr6	32207392	32207393	rs416352	30294719	Zeng Y	2018-08-24	JAMA Netw Open	Sex Differences in Genetic Associations With Longevity.	Longevity	564 Han Chinese ancestry male centenarian cases, 1,614 Han Chinese ancestry female centenarian cases, 773 Han Chinese ancestry male middle-aged controls, 1,526 Han Chinese ancestry female middle-aged controls	NA	6p21.32	NOTCH4	rs416352-?	0.51	8E-6	(female)	1.261	[1.14-1.40]	Illumina [5595657] (imputed)	N
830	chr6	32208323	32208324	rs424232	23936387	Ostensson M	2013-08-02	PLoS One	A possible mechanism behind autoimmune disorders discovered by genome-wide linkage and association analysis in celiac disease.	Celiac disease	206 European ancestry trios	NA	6p21.32	HLA	rs424232-C		5E-21				Illumina [944512] (imputed)	N
830	chr6	32209244	32209245	rs186298790	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	6p21.32	NR	rs186298790-?	NR	4E-11	(MIC-A)	3.61094	[2.54-4.68] unit increase	Illumina [11901634] (imputed)	N
830	chr6	32209325	32209326	rs570559246	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Treatment or medication use - sulfasalazine (UKB data field 20003_1140909702)	866 European ancestry cases, 455,410 European ancestry controls	NA	6p21.32		rs570559246-C	0.003586	7E-10		3.33	[2.27-4.39] unit increase	NR [11842647] (imputed)	N
830	chr6	32209450	32209451	rs380911	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.32	Intergenic	rs380911-?		9E-6		1.04	[1.02-1.06]	Illumina [7645193] (imputed)	N
830	chr6	32209450	32209451	rs380911	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.32	Intergenic	rs380911-?		3E-6		1.51	[1.27-1.80]	Illumina [7645193] (imputed)	N
830	chr6	32209771	32209773	rs28993469	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	6p21.32		rs28993469-C	0.261024	4E-12		0.019322034	[0.014-0.025] unit increase	Affymetrix [93095623] (imputed)	N
830	chr6	32209860	32209861	rs507778	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	6p21.32	intergenic	rs507778-T	0.3256	1E-24		0.03915988	[0.032-0.047] unit decrease	Affymetrix [~ 2500000] (imputed)	N
830	chr6	32209860	32209861	rs507778	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	6p21.32	intergenic	rs507778-T	0.3257	2E-29		0.04307319	[0.036-0.051] unit decrease	Affymetrix [~ 2500000] (imputed)	N
830	chr6	32210350	32210351	rs28732181	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Strep throat	52,487 European ancestry cases, 22,017 European ancestry controls	NA	6p21.32	NR	rs28732181-?	NR	6E-6		0.0381	[0.022-0.055] unit decrease	Illumina [at least 560000] (imputed)	N
830	chr6	32210798	32210799	rs419132	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	Triglycerides	up to 62,166 European ancestry individuals	NA	6p21.32	HLA-area	rs419132-G	0.2	5E-12		0.056	[0.04-0.072] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
830	chr6	32211084	32211085	rs412657	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6p21.32		rs412657-G	0.377896	3E-19		0.021442138	[0.017-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
830	chr6	32211316	32211317	rs411326	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	6p21.32		rs411326-C	0.728	4E-13				Affymetrix [10369434] (imputed)	N
830	chr6	32212654	32212655	rs9267951	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.32		rs9267951-C	0.729	9E-29				Affymetrix [10369434] (imputed)	N
830	chr6	32212654	32212655	rs9267951	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p21.32		rs9267951-C	0.729	5E-17				Affymetrix [10369434] (imputed)	N
830	chr6	32212693	32212694	rs9267952	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.32		rs9267952-G	0.573	6E-23				Affymetrix [10369434] (imputed)	N
830	chr6	32212693	32212694	rs9267952	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	XXbac-BPG154L12.4	rs9267952-A	NR	5E-14		0.0214967	[0.016-0.027] unit increase	Affymetrix [319769] (imputed)	N
830	chr6	32212693	32212694	rs9267952	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	XXbac-BPG154L12.4	rs9267952-A	NR	2E-13		0.0209537	[0.015-0.027] unit increase	Affymetrix [319769] (imputed)	N
830	chr6	32212693	32212694	rs9267952	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	XXbac-BPG154L12.4	rs9267952-A	NR	5E-12		0.0199663	[0.014-0.026] unit increase	Affymetrix [321169] (imputed)	N
830	chr6	32212705	32212705	rs35161164	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	XXbac-BPG154L12.4	rs35161164-CG	NR	1E-11		0.0195502	[0.014-0.025] unit decrease	Affymetrix [321016] (imputed)	N
830	chr6	32212705	32212705	rs35161164	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	XXbac-BPG154L12.4	rs35161164-CG	NR	5E-15		0.0245369	[0.018-0.031] unit decrease	Affymetrix [323123] (imputed)	N
830	chr6	32212856	32212857	rs10456404	33119750	Vergara C	2020-10-29	J Infect Dis	A multi-ancestry sex stratified genome-wide association study of spontaneous clearance of hepatitis C virus.	Hepatitis C (spontaneous viral clearance)	239 African ancestry male cases, 1,184 African ancestry male controls, 206 African ancestry female cases, 572 African ancestry female controls, 489 European ancestry male cases, 703 European ancestry male controls, 212 European ancestry female cases, 332 European ancestry female controls, 91 Hispanic male cases, 197 Hispanic male controls, 82 Hispanic female cases, 116 Hispanic female controls	NA	6p21.32	NR	rs10456404-C	0.13	2E-7	(female)	1.89	[NR]	Illumina [5730693] (imputed)	N
830	chr6	32213051	32213052	rs9267954	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	XXbac-BPG154L12.4	rs9267954-T	NR	2E-12		0.022421	[0.016-0.029] unit increase	Affymetrix [319769] (imputed)	N
830	chr6	32213051	32213052	rs9267954	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	XXbac-BPG154L12.4	rs9267954-T	NR	3E-12		0.0221835	[0.016-0.028] unit increase	Affymetrix [319769] (imputed)	N
830	chr6	32213051	32213052	rs9267954	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	XXbac-BPG154L12.4	rs9267954-T	NR	2E-11		0.0234019	[0.017-0.03] unit decrease	Affymetrix [323123] (imputed)	N
830	chr6	32213051	32213052	rs9267954	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	XXbac-BPG154L12.4	rs9267954-T	NR	1E-11		0.0218043	[0.015-0.028] unit increase	Affymetrix [321169] (imputed)	N
830	chr6	32213209	32213210	rs454748	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	XXbac-BPG154L12.4	rs454748-A	NR	3E-11		0.0188397	[0.013-0.024] unit decrease	Affymetrix [321016] (imputed)	N
830	chr6	32213209	32213210	rs454748	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	XXbac-BPG154L12.4	rs454748-A	NR	5E-15		0.0242475	[0.018-0.03] unit decrease	Affymetrix [323123] (imputed)	N
830	chr6	32217091	32217092	rs6936204	25096241	Keller MF	2014-08-05	Hum Mol Genet	Trans-ethnic meta-analysis of white blood cell phenotypes.	Neutrophil count	9,802 Japanese ancestry individuals, 16,550 European ancestry individuals, 7,391 African American individuals	NA	6p21.32	AK123889	rs6936204-C	0.585	6E-6	(EA)	0.02	[0.012-0.028] unit increase	Illumina [NR] (imputed)	N
830	chr6	32217091	32217092	rs6936204	25096241	Keller MF	2014-08-05	Hum Mol Genet	Trans-ethnic meta-analysis of white blood cell phenotypes.	Neutrophil count	9,802 Japanese ancestry individuals, 16,550 European ancestry individuals, 7,391 African American individuals	NA	6p21.32	AK123889	rs6936204-?	NR	3E-8		0.0196	[0.013-0.026] unit decrease	Illumina [NR] (imputed)	N
830	chr6	32217231	32217232	rs9267972	24925725	Chung SA	2014-06-12	J Am Soc Nephrol	Lupus nephritis susceptibility loci in women with systemic lupus erythematosus.	Lupus nephritis in systemic lupus erythematosus	588 European ancestry cases, 1,412 European ancestry controls	NA	6p21.32	C6orf10, NOTCh4	rs9267972-A	NR	2E-6	(Dominant)	1.85	[1.46,2.33]	Affymetrix, Illumina [1621689] (imputed)	N
830	chr6	32217412	32217413	rs3115574	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p21.32	NR	rs3115574-?	NR	2E-13		0.0942	[0.069-0.119] unit increase	Illumina [at least 560000] (imputed)	N
830	chr6	32217845	32217846	rs2894240	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	XXbac-BPG154L12.4	rs2894240-A	NR	5E-12		0.0197637	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
830	chr6	32217845	32217846	rs2894240	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	XXbac-BPG154L12.4	rs2894240-A	NR	2E-11		0.0191638	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
830	chr6	32217845	32217846	rs2894240	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	XXbac-BPG154L12.4	rs2894240-A	NR	4E-11		0.0191969	[0.014-0.025] unit increase	Affymetrix [321169] (imputed)	N
830	chr6	32218842	32218843	rs3115573	20595679	Feehally J	2010-07-01	J Am Soc Nephrol	HLA has strongest association with IgA nephropathy in genome-wide analysis.	Nephropathy	187 European ancestry child cases, 244 European ancestry cases, 4,980 European ancestry controls	NA	6p21.32	intergenic	rs3115573-?	NR	1E-9		1.62	[1.39-1.90]	Illumina [286200]	N
830	chr6	32218988	32218989	rs9296015	21779181	Gorlova O	2011-07-14	PLoS Genet	Identification of novel genetic markers associated with clinical phenotypes of systemic sclerosis through a genome-wide association strategy.	Systemic sclerosis	2,296 European ancestry cases, 5,172 European ancestry controls	3,175 European ancestry cases, 4,210 European ancestry controls	6p21.32	NOTCH4	rs9296015-?	0.81	1E-8	(ATA positive)	1.85	[1.49-2.27]	Illumina [NR] (imputed)	N
830	chr6	32218988	32218989	rs9296015	21505073	Terao C	2011-04-19	Hum Mol Genet	The human AIRE gene at chromosome 21q22 is a genetic determinant for the predisposition to rheumatoid arthritis in Japanese population.	Rheumatoid arthritis	1,247 Japanese ancestry cases, 1,486 Japanese ancestry controls	4,168 Japanese ancestry cases, 5,003 Japanese ancestry controls	6p21.32	HLA locus	rs9296015-?	NR	2E-38				Illumina [241523]	N
830	chr6	32221551	32221552	rs9267995	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	XXbac-BPG154L12.4	rs9267995-G	NR	2E-9		0.0171285	[0.012-0.023] unit decrease	Affymetrix [321114] (imputed)	N
830	chr6	32221551	32221552	rs9267995	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	XXbac-BPG154L12.4	rs9267995-G	NR	1E-21		0.027192	[0.022-0.033] unit decrease	Affymetrix [321169] (imputed)	N
830	chr6	32221551	32221552	rs9267995	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	6p21.32	NR	rs9267995-A	0.548939	3E-14		0.0512585	[0.038-0.065] unit decrease	Affymetrix [17914406] (imputed)	N
830	chr6	32221567	32221568	rs9296018	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.32		rs9296018-A	0.81	6E-10				Affymetrix [10369434] (imputed)	N
830	chr6	32222545	32222546	rs139197261	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6p21.32	XXbac-BPG154L12.4	rs139197261-G	0.015037	2E-10		0.05895812	[0.041-0.077] unit decrease	Affymetrix [93095623] (imputed)	N
830	chr6	32223257	32223258	rs3130320	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	XXbac-BPG154L12.4	rs3130320-T	NR	2E-25		0.030089	[0.024-0.036] unit decrease	Affymetrix [319769] (imputed)	N
830	chr6	32223257	32223258	rs3130320	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	XXbac-BPG154L12.4	rs3130320-T	NR	1E-15		0.0257005	[0.019-0.032] unit decrease	Affymetrix [323858] (imputed)	N
830	chr6	32223257	32223258	rs3130320	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	XXbac-BPG154L12.4	rs3130320-T	NR	5E-24		0.0292129	[0.024-0.035] unit decrease	Affymetrix [319769] (imputed)	N
830	chr6	32223257	32223258	rs3130320	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	XXbac-BPG154L12.4	rs3130320-T	NR	6E-14		0.0240661	[0.018-0.03] unit decrease	Affymetrix [127266] (imputed)	N
830	chr6	32223257	32223258	rs3130320	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	XXbac-BPG154L12.4	rs3130320-T	NR	7E-18		0.0248771	[0.019-0.031] unit increase	Affymetrix [321016] (imputed)	N
830	chr6	32223257	32223258	rs3130320	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	XXbac-BPG154L12.4	rs3130320-T	NR	3E-23		0.0312285	[0.025-0.037] unit increase	Affymetrix [323123] (imputed)	N
830	chr6	32223257	32223258	rs3130320	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.32	NOTCH4, C6orf10	rs3130320-C	0.6281	7E-8	(EA)	0.0224	[0.014-0.03] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
830	chr6	32223257	32223258	rs3130320	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.32	BTNL2	rs3130320-C	0.6281	6E-6	(EA, men)	0.0276	[0.016-0.04] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
830	chr6	32223257	32223258	rs3130320	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6p21.32	BTNL2	rs3130320-C	0.6281	6E-9	(EA)	0.0271	[0.018-0.036] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
830	chr6	32223257	32223258	rs3130320	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6p21.32	BTNL2	rs3130320-C	0.6267	9E-6	(EA, men)	0.0304	[0.017-0.044] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
830	chr6	32223257	32223258	rs3130320	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.32	NOTCH4, C6orf10	rs3130320-?	0.6281	5E-8	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
830	chr6	32223257	32223258	rs3130320	21408207	Chung SA	2011-03-03	PLoS Genet	Differential genetic associations for systemic lupus erythematosus based on anti-dsDNA autoantibody production.	Systemic lupus erythematosus	811 anti-dsDNA positive European ancestry cases, 906 anti-dsDNA negative European ancestry cases, 4,813 European ancestry controls	NA	6p21.32	NOTCH4, C6orf10	rs3130320-T	0.39	3E-6	(case-only)	1.39	[1.21-1.60]	Illumina [421318] (imputed)	N
830	chr6	32226351	32226352	rs112845108	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	XXbac-BPG154L12.4	rs112845108-T	NR	3E-8		0.0203101	[0.013-0.027] unit increase	Affymetrix [323123] (imputed)	N
830	chr6	32226480	32226481	rs9268026	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IGF2R	5,361 Icelandic ancestry individuals	NA	6p21.32		rs9268026-G	0.07788	3E-13		0.252335	[0.18-0.32] unit increase	Illumina [7506463] (imputed)	N
830	chr6	32229237	32229238	rs3132969	29534301	Nishida N	2018-03-13	Hepatology	Key HLA-DRB1-DQB1 haplotypes and role of the BTNL2 gene for response to a hepatitis B vaccine.	Response to hepatitis B vaccine	107 Japanese ancestry low responder individuals, 351 Japanese ancestry intermediate responder individuals, 735 Japanese ancestry high responder individuals	NA	6p21.32	OXA1L	rs3132969-?		2E-6		0.147	unit decrease	Affymetrix [427664]	N
830	chr6	32230353	32230354	rs3132972	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Perceived unattractiveness to mosquitoes	16,576 European ancestry individuals	NA	6p21.32	intergenic	rs3132972-G	NR	2E-6		0.114743	[0.067-0.162] unit decrease	Illumina [7433384] (imputed)	N
830	chr6	32230353	32230354	rs3132972	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.32	Intergenic	rs3132972-G	NR	8E-9		0.0190698	[0.013-0.026] unit decrease	Illumina [13520550] (imputed)	N
830	chr6	32232651	32232652	rs9268072	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Hepatitis B	1,425 European ancestry cases, 218,180 European ancestry controls	NA	6p21.32	NR	rs9268072-?	NR	1E-6		0.2518	[0.15-0.36] unit increase	Illumina [at least 560000] (imputed)	N
831	chr6	32244080	32244080	rs200663261	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cirrhosis	122 European ancestry cases, 347,284 European ancestry controls, 2,551 East Asian ancestry cases, 176,175 East Asian ancestry controls	NA	6p21.32		rs200663261-CTACA	NR	2E-11		0.1931	[0.14-0.25] unit increase	Affymetrix, Illumina [20457790] (imputed)	N
831	chr6	32244626	32244627	rs3130340	18445777	Styrkarsdottir U	2008-04-29	N Engl J Med	Multiple genetic loci for bone mineral density and fractures.	Bone mineral density (spine)	5,861 European ancestry individuals	7,925 European ancestry individuals	6p21.32	MHC, C6orf10	rs3130340-T	0.79	1E-7		0.1	[0.06-0.13] s.d. decrease	Illumina [301019]	N
831	chr6	32247044	32247045	rs145568234	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Ulcerative colitis	5,371 European ancestry cases, 412,561 European ancestry controls, 314 East Asian ancestry cases, 178,375 East Asian ancestry controls	NA	6p21.32		rs145568234-G	NR	5E-35		1.1793	[0.99-1.37] unit increase	Affymetrix, Illumina [25840981] (imputed)	N
831	chr6	32254260	32254260	rs9281714	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs9281714-T	0.974	2E-6		1.419	[1.28-1.56]	Illumina [11270530] (imputed)	N
831	chr6	32255512	32255513	rs184614409	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	6p21.32	NR	rs184614409-?	NR	8E-10		6.14	NR z score decrease	Illumina [at least 830937] (imputed)	N
831	chr6	32257565	32257566	rs926070	24292274	Speedy HE	2013-12-01	Nat Genet	A genome-wide association study identifies multiple susceptibility loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	1,739 European ancestry cases, 5,199 European ancestry controls	1,144 European ancestry cases, 3,151 European ancestry controls	6p21.32	HLA	rs926070-A	0.66	4E-8		1.27	[NR]	Illumina [450000] (imputed)	N
831	chr6	32261251	32261252	rs7775397	33909500	Moll M	2021-04-28	Am J Physiol Lung Cell Mol Physiol	A Systematic Analysis of Protein-altering Exonic Variants in Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease	up to 31,465 European ancestry cases, up to 203,688 European ancestry controls, up to 1,413 African ancestry cases, up to 6,080 African ancestry controls, up to 287 East Asian ancestry cases, up to 7,484 East Asian ancestry controls, up to 61 Hispanic cases, up to 613 Hispanic controls	NA	6p21.32	C6orf10	rs7775397-G	0.13	3E-13		1.12	[1.08 -1.15]	Illumina [at least 109036]	N
831	chr6	32261251	32261252	rs7775397	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p21.32	C6orf10	rs7775397-G		1E-35		0.042	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
831	chr6	32261251	32261252	rs7775397	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.32	c6orf10	rs7775397-G	0.1139	5E-71		3.83	[NR]	Illumina [242824]	N
831	chr6	32265880	32265881	rs114355928	32534018	Liu X	2020-06-10	Brain Behav Immun	Genetic factors underlying the bidirectional relationship between autoimmune and mental disorders - findings from a Danish population-based study.	Autoimmune traits	1,383 Danish ancestry cases, 62,656 Danish ancestry controls	NA	6p21.32	NR	rs114355928-T	0.018	2E-8		2.02	[1.62-2.53]	NR [7721839] (imputed)	N
831	chr6	32266309	32266310	rs9268155	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	6p21.32	NR	rs9268155-?	NR	1E-10		0.073	[0.051-0.095] unit decrease	Illumina [at least 560000] (imputed)	N
831	chr6	32272155	32272156	rs56036302	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Sjogren's syndrome	303 East Asian ancestry cases, 175,599 East Asian ancestry controls	NA	6p21.32		rs56036302-T	0.200590293	6E-10		0.6675887	[0.46-0.88] unit increase	Illumina [13429612] (imputed)	N
831	chr6	32272155	32272156	rs56036302	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Autoimmune hepatitis	85 East Asian ancestry cases, 166,529 East Asian ancestry controls	NA	6p21.32		rs56036302-T	0.200204228	7E-9		1.2431419	[0.82-1.66] unit increase	Illumina [13427809] (imputed)	N
831	chr6	32273764	32273765	rs6457536	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs6457536-G	NR	5E-11		0.0222803	[0.016-0.029] unit decrease	Affymetrix [321169] (imputed)	N
831	chr6	32276274	32276275	rs28366178	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	6p21.32	C6orf10	rs28366178-T	NR	9E-8		0.0353278	[0.022-0.048] unit increase	Illumina [13519193] (imputed)	N
831	chr6	32278634	32278635	rs9268199	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	C6orf10	rs9268199-G	NR	2E-8		0.0203912	[0.013-0.028] unit decrease	Affymetrix [319769] (imputed)	N
831	chr6	32278634	32278635	rs9268199	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs9268199-G	NR	3E-8		0.0201935	[0.013-0.027] unit decrease	Affymetrix [319769] (imputed)	N
831	chr6	32278634	32278635	rs9268199	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs9268199-G	NR	2E-8		0.0207992	[0.014-0.028] unit decrease	Affymetrix [321169] (imputed)	N
831	chr6	32278634	32278635	rs9268199	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.32	C6orf10	rs9268199-G	NR	2E-8	(women)	0.0327867	[0.021-0.044] unit increase	Illumina [13520550] (imputed)	N
831	chr6	32278791	32278792	rs3864302	34116867	Tanaka N	2021-06-02	J Allergy Clin Immunol	Eight novel susceptibility loci and putative causal variants in atopic dermatitis.	Atopic dermatitis	2,597 Japanese ancestry cases, 110,504 Japanese ancestry controls	NA	6p21.32		rs3864302-?	NR	6E-17		0.77	[0.72-0.82]	Illumina [9900441] (imputed)	N
831	chr6	32279339	32279340	rs9268202	29534301	Nishida N	2018-03-13	Hepatology	Key HLA-DRB1-DQB1 haplotypes and role of the BTNL2 gene for response to a hepatitis B vaccine.	Response to hepatitis B vaccine	107 Japanese ancestry low responder individuals, 351 Japanese ancestry intermediate responder individuals, 735 Japanese ancestry high responder individuals	NA	6p21.32	C6orf10	rs9268202-?		8E-8		0.168	unit decrease	Affymetrix [427664]	N
831	chr6	32279621	32279622	rs6934429	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	C6orf10	rs6934429-T	NR	9E-14		0.0248579	[0.018-0.031] unit decrease	Affymetrix [319769] (imputed)	N
831	chr6	32279621	32279622	rs6934429	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs6934429-T	NR	7E-13		0.0239747	[0.017-0.031] unit decrease	Affymetrix [319769] (imputed)	N
831	chr6	32280590	32280591	rs9268208	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	C6orf10	rs9268208-C	NR	8E-9		0.0246281	[0.016-0.033] unit increase	Affymetrix [321016] (imputed)	N
831	chr6	32281015	32281016	rs74209703	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.32	NR	rs74209703-?	NR	5E-10				Affymetrix [~ 8270000] (imputed)	N
831	chr6	32281411	32281412	rs28366179	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	6p21.32	C6orf10	rs28366179-A	0.1646	3E-21		0.04564547	[0.036-0.055] unit increase	Affymetrix [~ 2500000] (imputed)	N
831	chr6	32282067	32282068	rs2395141	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs2395141-?	NR	3E-10				Affymetrix [~ 8270000] (imputed)	N
831	chr6	32282853	32282854	rs6910071	20453842	Stahl EA	2010-05-09	Nat Genet	Genome-wide association study meta-analysis identifies seven new rheumatoid arthritis risk loci.	Rheumatoid arthritis	5,539 European ancestry cases, 20,169 European ancestry controls	6,768 European ancestry cases, 8,806 European ancestry controls	6p21.32	HLA-DRB1	rs6910071-G	0.22	1E-299		2.88	[2.73-3.03]	Affymetrix, Illumina [~ 2716259] (imputed)	N
831	chr6	32286684	32286685	rs2022542	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	6p21.32	C6orf10	rs2022542-G	0.0582	2E-52		0.1169749	[0.1-0.13] unit increase	Affymetrix [~ 2500000] (imputed)	N
831	chr6	32287328	32287329	rs2746115	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	6p21.32	NR	rs2746115-?	NR	8E-9				Affymetrix [~ 8270000] (imputed)	N
831	chr6	32293577	32293578	rs2395143	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	C6orf10, HNRNPA1P2	rs2395143-G	NR	2E-10		0.0215226	[0.015-0.028] unit decrease	Affymetrix [323123] (imputed)	N
831	chr6	32295428	32295431	rs759777208	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	C6orf10	rs759777208-CT	NR	3E-12		0.0275667	[0.02-0.035] unit decrease	Affymetrix [323858] (imputed)	N
831	chr6	32295428	32295431	rs759777208	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	C6orf10	rs759777208-CT	NR	2E-11		0.0265095	[0.019-0.034] unit decrease	Affymetrix [127266] (imputed)	N
831	chr6	32295428	32295431	rs759777208	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	C6orf10	rs759777208-CT	NR	4E-8		0.0212618	[0.014-0.029] unit increase	Affymetrix [323123] (imputed)	N
831	chr6	32295428	32295431	rs759777208	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p21.32	C6orf10	rs759777208-CT	NR	2E-8		0.0218536	[0.014-0.03] unit decrease	Affymetrix [323858] (imputed)	N
831	chr6	32295743	32295744	rs9268249	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	C6orf10	rs9268249-A	NR	5E-8		0.015398	[0.0099-0.0209] unit decrease	Affymetrix [321016] (imputed)	N
831	chr6	32295743	32295744	rs9268249	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	C6orf10	rs9268249-A	NR	7E-15		0.0239145	[0.018-0.03] unit decrease	Affymetrix [323123] (imputed)	N
831	chr6	32295873	32295874	rs6913664	34785669	Grosche S	2021-11-16	Nat Commun	Rare variant analysis in eczema identifies exonic variants in DUSP1, NOTCH4 and SLC9A4.	Eczema	20,016 European ancestry cases, 380,433 European ancestry controls	NA	6p21.32		rs6913664-T	0.4549	1E-15		0.91		Affymetrix, Illumina [9397031] (imputed)	N
831	chr6	32295877	32295878	rs9268251	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	C6orf10	rs9268251-A	NR	7E-11		0.0216525	[0.015-0.028] unit decrease	Affymetrix [319769] (imputed)	N
831	chr6	32295877	32295878	rs9268251	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs9268251-A	NR	3E-10		0.0208763	[0.014-0.027] unit decrease	Affymetrix [319769] (imputed)	N
831	chr6	32295877	32295878	rs9268251	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs9268251-A	NR	5E-10		0.0208582	[0.014-0.027] unit decrease	Affymetrix [321169] (imputed)	N
831	chr6	32299457	32299458	rs145396511	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs145396511-T	0.989	5E-9	(conditional)	1.574	[1.42-1.72]	Illumina [11270530] (imputed)	N
831	chr6	32300808	32300809	rs3129960	33106546	Johnson TA	2020-10-26	J Hum Genet	Association of an IGHV3-66 gene variant with Kawasaki disease.	Kawasaki disease	1,276 East Asian ancestry cases, 5,086 East Asian ancestry controls	2,152 East Asian ancestry cases, 2,751 East Asian ancestry controls	6p21.32	C6orf10, LOC101929163	rs3129960-G	NR	7E-13		0.73	[0.67-0.80]	Affymetrix, Illumina [6265045] (imputed)	N
831	chr6	32301426	32301427	rs115378818	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.32	C6orf10	rs115378818-T	0.0143760000000001	3E-49		0.16935384	[0.15-0.19] unit decrease	Affymetrix [93095623] (imputed)	N
831	chr6	32302381	32302382	rs1265757	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p21.32	C6orf10	rs1265757-A	0.343	1E-33				Illumina [118177]	N
831	chr6	32305237	32305238	rs78546106	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs78546106-?	NR	6E-11				Affymetrix [~ 8270000] (imputed)	N
831	chr6	32305657	32305658	rs926592	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p21.32	TSBP1	rs926592-C	0.658	6E-6		0.059	[0.034-0.084] unit increase	Affymetrix, Illumina [7374092] (imputed)	N
831	chr6	32305978	32305979	rs3129900	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (multivariate analysis)	477,968 European ancestry individuals	NA	6p21.32	C6orf10	rs3129900-G	0.171	7E-17		0.05	[0.038-0.062] unit decrease	NR [NR] (imputed)	N
831	chr6	32305978	32305979	rs3129900	20639878	Singer JB	2010-07-18	Nat Genet	A genome-wide study identifies HLA alleles associated with lumiracoxib-related liver injury.	Lumiracoxib-related liver injury	31 European ancestry cases, 3 Hispanic cases, 1 case, 176 European, Hispanic and other ancestry controls	79 European ancestry cases, 16 Hispanic ancestry cases, 1 case, 405 European, Hispanic and other ancestry controls	6p21.32	HLA-DRB1	rs3129900-?	0.105	7E-25		7.5	[5.0-11.3]	Affymetrix [682386]	N
831	chr6	32306089	32306090	rs9368716	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	C6orf10	rs9368716-A	NR	4E-17		0.0234977	[0.018-0.029] unit increase	Affymetrix [319769] (imputed)	N
831	chr6	32306089	32306090	rs9368716	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs9368716-A	NR	1E-16		0.0231755	[0.018-0.029] unit increase	Affymetrix [319769] (imputed)	N
831	chr6	32306089	32306090	rs9368716	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs9368716-A	NR	4E-9		0.0166452	[0.011-0.022] unit increase	Affymetrix [321114] (imputed)	N
831	chr6	32306089	32306090	rs9368716	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs9368716-A	NR	4E-17		0.023828	[0.018-0.029] unit increase	Affymetrix [321169] (imputed)	N
831	chr6	32308907	32308908	rs9469099	23042114	Hirota T	2012-10-07	Nat Genet	Genome-wide association study identifies eight new susceptibility loci for atopic dermatitis in the Japanese population.	Atopic dermatitis	1,472 Japanese ancestry cases, 7,971 Japanese ancestry controls	1,856 Japanese ancestry cases, 7,021 Japanese ancestry controls	6p21.32	C6orf10	rs9469099-G	0.909	5E-19		1.61	[1.44-1.80]	Illumina [606164]	N
831	chr6	32310862	32310863	rs2849018	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Diastolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	6p21.32	C6orf10	rs2849018-C	0.6531	2E-17		0.3443	[0.26-0.42] mmHg increase	Affymetrix [NR] (imputed)	N
831	chr6	32311458	32311459	rs3132954	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.32	NR	rs3132954-?	NR	3E-11				Affymetrix [~ 8270000] (imputed)	N
831	chr6	32313658	32313659	rs1265764	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	C6orf10	rs1265764-A	NR	2E-8		0.0409576	[0.027-0.055] unit decrease	Affymetrix [323858] (imputed)	N
831	chr6	32313658	32313659	rs1265764	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	C6orf10	rs1265764-A	NR	1E-8		0.0407492	[0.027-0.055] unit increase	Affymetrix [323123] (imputed)	N
831	chr6	32313658	32313659	rs1265764	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.32	C6orf10, XXbac-BPG154L12.5	rs1265764-A	0.0414	7E-7		0.1177	[0.071-0.164] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
831	chr6	32315252	32315253	rs78461719	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	6p21.32	NR	rs78461719-T	0.03388599999999997	1E-8		0.0314455	[0.022-0.041] unit increase	Affymetrix [16578495] (imputed)	N
831	chr6	32315726	32315727	rs910049	23321320	Urabe Y	2013-01-12	J Hepatol	A genome-wide association study of HCV-induced liver cirrhosis in the Japanese population identifies novel susceptibility loci at the MHC region.	Hepatitis C induced liver cirrhosis	682 Japanese ancestry cases, 1,045 Japanese ancestry controls	936 Japanese ancestry cases, 3,809 Japanese ancestry controls	6p21.32	C6orf10	rs910049-A	0.142	9E-11		1.46	[1.28-1.62]	Illumina [431618]	N
831	chr6	32319636	32319637	rs9268301	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6p21.32	C6orf10	rs9268301-A	0.438	2E-6	(Diet carbohydrate )	0.03	[NR] g/d increase	Illumina [899892]	N
831	chr6	32321472	32321473	rs368529276	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs368529276-A	0.961	4E-19		2.522	[2.32-2.72]	Illumina [11270530] (imputed)	N
831	chr6	32321553	32321554	rs2395148	18576341	Behrens EM	2008-06-24	Arthritis Rheum	Association of the TRAF1-C5 locus on chromosome 9 with juvenile idiopathic arthritis.	Arthritis (juvenile idiopathic)	67 European ancestry cases, 1,952 European ancestry controls, 63 cases	NA	6p21.32	HLA-DRB1	rs2395148-?	NR	2E-10		5.37	[3.02-9.56]	Illumina [524684]	N
831	chr6	32325370	32325371	rs13196329	29196614	Sud A	2017-12-01	Nat Commun	Genome-wide association study of classical Hodgkin lymphoma identifies key regulators of disease susceptibility.	Mixed cellularity Hodgkin lymphoma	828 European ancestry cases, 14,315 European ancestry controls	135 cases, 3,069 controls	6p21.32	C6orf10	rs13196329-?	NR	3E-14	(conditioned on rs1633096)	5.88	[3.70-9.09]	Illumina [> 10000000] (imputed)	N
831	chr6	32325370	32325371	rs13196329	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral fat	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	6p21.32	C6orf10	rs13196329-C	0.02	3E-6	(women)			Affymetrix, Illumina [2500000] (imputed)	N
831	chr6	32326652	32326653	rs7775581	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.32		rs7775581-C	0.429	4E-12				Affymetrix [10369434] (imputed)	N
831	chr6	32326920	32326921	rs9268310	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	Systemic lupus erythematosus	1,639 East Asian ancestry cases, 2,410 East Asian ancestry controls	NA			rs9268310-C	NR	7E-14		0.3626	[0.27-0.46] unit decrease	Illumina [NR] (imputed)	N
831	chr6	32329149	32329150	rs137931178	26959717	Nicoletti P	2016-03-09	Pharmacogenet Genomics	HLA-DRB1*16: 01-DQB1*05: 02 is a novel genetic risk factor for flupirtine-induced liver injury.	Drug-induced liver injury	620 European ancestry cases, 10,588 European ancestry controls	NA	6p21.32	MHC	rs137931178-?	NR	7E-6		79.0	[11.72-533.7]	Illumina [NR] (imputed)	N
831	chr6	32335203	32335204	rs2143462	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	C6orf10	rs2143462-A	NR	7E-12		0.0268233	[0.019-0.034] unit decrease	Affymetrix [323858] (imputed)	N
831	chr6	32335203	32335204	rs2143462	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	C6orf10	rs2143462-A	NR	6E-11		0.0256594	[0.018-0.033] unit decrease	Affymetrix [127266] (imputed)	N
831	chr6	32336186	32336187	rs3129934	22457343	Martinelli-Boneschi F	2012-03-28	Mult Scler	A genome-wide association study in progressive multiple sclerosis.	Multiple sclerosis	197 European ancestry cases, 234 European ancestry controls	379 European ancestry cases, 398 European ancestry controls	6p21.32	C6orf10	rs3129934-T	0.10	7E-16		2.34	[1.90-2.87]	Affymetrix [277866]	N
831	chr6	32336186	32336187	rs3129934	18941528	Comabella M	2008-10-22	PLoS One	Identification of a novel risk locus for multiple sclerosis at 13q31.3 by a pooled genome-wide scan of 500,000 single nucleotide polymorphisms.	Multiple sclerosis	242 European ancestry cases, 242 European ancestry controls	553 European ancestry cases, 1,033 European ancestry controls	6p21.32	HLA-DRB1	rs3129934-T	NR	9E-11		3.3	[2.3-4.9]	Affymetrix [428867]	N
831	chr6	32336544	32336545	rs113857285	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Celiac disease (PheCode 557.1)	1,036 European ancestry cases, 455,312 European ancestry controls	NA	6p21.32		rs113857285-A	0.002145	8E-10		4.04	[2.75-5.33] unit increase	NR [11842647] (imputed)	N
831	chr6	32336765	32336766	rs3129939	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.32	c6orf10	rs3129939-G	0.1772	2E-40		2.6	[NR]	Illumina [242824]	N
831	chr6	32337150	32337150	rs543236673	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	C6orf10	rs543236673-A	NR	2E-9		0.0175479	[0.012-0.023] unit decrease	Affymetrix [319769] (imputed)	N
831	chr6	32337150	32337150	rs543236673	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	C6orf10	rs543236673-A	NR	1E-12		0.0231806	[0.017-0.03] unit decrease	Affymetrix [323858] (imputed)	N
831	chr6	32337150	32337150	rs543236673	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs543236673-A	NR	3E-8		0.0162709	[0.011-0.022] unit decrease	Affymetrix [319769] (imputed)	N
831	chr6	32337150	32337150	rs543236673	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	C6orf10	rs543236673-A	NR	1E-10		0.0209276	[0.015-0.027] unit decrease	Affymetrix [127266] (imputed)	N
831	chr6	32337150	32337150	rs543236673	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	C6orf10	rs543236673-A	NR	2E-12		0.0205605	[0.015-0.026] unit increase	Affymetrix [321016] (imputed)	N
831	chr6	32337150	32337150	rs543236673	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	C6orf10	rs543236673-A	NR	1E-22		0.0312248	[0.025-0.037] unit increase	Affymetrix [323123] (imputed)	N
831	chr6	32337150	32337150	rs543236673	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs543236673-A	NR	4E-10		0.0185214	[0.013-0.024] unit decrease	Affymetrix [321169] (imputed)	N
831	chr6	32337629	32337630	rs2273017	21900946	Nakabayashi K	2011-09-08	J Hum Genet	Identification of independent risk loci for Graves' disease within the MHC in the Japanese population.	Graves' disease	1,119 Japanese ancestry cases, 2,718 Japanese ancestry controls	432 Japanese ancestry cases, 1,157 Japanese ancestry controls	6p21.32	MHC	rs2273017-A	0.51	2E-22		1.53	[1.40-1.66]	Perlegen [268068]	N
831	chr6	32337947	32337959	rs11275478	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atopic dermatitis	4,296 East Asian ancestry cases, 163,807 East Asian ancestry controls	NA	6p21.32		rs11275478-A	0.218070297	4E-17		0.25364324	[0.19-0.31] unit decrease	Illumina [13428180] (imputed)	N
831	chr6	32338282	32338283	rs3129942	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	6p21.32	C6orf10	rs3129942-G	0.742436	3E-18		0.013944	[0.011-0.017] unit decrease	Affymetrix [12370749]	N
831	chr6	32338694	32338695	rs3129943	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cirrhosis	2,551 East Asian ancestry cases, 176,175 East Asian ancestry controls	NA	6p21.32		rs3129943-G	0.365494247	2E-11		0.19759746	[0.14-0.26] unit increase	Illumina [13429980] (imputed)	N
831	chr6	32338694	32338695	rs3129943	21804548	Hirota T	2011-07-31	Nat Genet	Genome-wide association study identifies three new susceptibility loci for adult asthma in the Japanese population.	Asthma	1,532 Japanese ancestry cases, 3,304 Japanese ancestry controls	5,639 Japanese ancestry cases, 24,608 Japanese ancestry controls	6p21.32	C6orf10	rs3129943-T	0.62	3E-15		1.17	[1.12-1.21]	Illumina [458847]	N
831	chr6	32338985	32338986	rs2073044	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	C6orf10	rs2073044-T	NR	3E-16		0.0261214	[0.02-0.032] unit increase	Affymetrix [319769] (imputed)	N
831	chr6	32338985	32338986	rs2073044	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs2073044-T	NR	5E-16		0.0258492	[0.02-0.032] unit increase	Affymetrix [319769] (imputed)	N
831	chr6	32338985	32338986	rs2073044	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs2073044-T	NR	8E-14		0.0241214	[0.018-0.03] unit increase	Affymetrix [321169] (imputed)	N
831	chr6	32339075	32339076	rs2050190	34116867	Tanaka N	2021-06-02	J Allergy Clin Immunol	Eight novel susceptibility loci and putative causal variants in atopic dermatitis.	Atopic dermatitis	2,597 Japanese ancestry cases, 110,504 Japanese ancestry controls, 25,685 European ancestry cases, 76,768 European ancestry controls	NA	6p21.32		rs2050190-?	NR	4E-13		0.8	[0.75-0.85]	Illumina [5170515] (imputed)	N
831	chr6	32339075	32339076	rs2050190	22703881	Tang W	2012-06-14	Am J Hum Genet	Genetic associations for activated partial thromboplastin time and prothrombin time, their gene expression profiles, and risk of coronary artery disease.	Activated partial thromboplastin time	9,240 European ancestry individuals	2611 European ancestry individuals	6p21.32	C6orf10	rs2050190-A	NR	7E-7		0.2528	[0.17-0.34] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
831	chr6	32339646	32339647	rs2050189	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	C6orf10	rs2050189-C	NR	2E-8		0.0208018	[0.014-0.028] unit decrease	Affymetrix [323858] (imputed)	N
831	chr6	32339783	32339784	rs9501618	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs9501618-C	0.016	9E-26	(Complement C4, C4A.C4B.4481.34.2)	1.03	[0.83-1.23] unit increase	Affymetrix [10572788] (imputed)	N
831	chr6	32339839	32339840	rs6913309	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Strep throat	52,487 European ancestry cases, 22,017 European ancestry controls	NA	6p21.32	NR	rs6913309-?	NR	5E-7		0.0308	[0.019-0.043] unit decrease	Illumina [at least 560000] (imputed)	N
831	chr6	32339839	32339840	rs6913309	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.32	Intergenic	rs6913309-T	NR	4E-6	(men)	0.0229829	[0.013-0.033] unit increase	Illumina [13520550] (imputed)	N
831	chr6	32339896	32339897	rs2050188	31375628	Tengvall K	2019-08-02	Proc Natl Acad Sci U S A	Molecular mimicry between Anoctamin 2 and Epstein-Barr virus nuclear antigen 1 associates with multiple sclerosis risk.	Anti-anoctamin 2 antibody levels	11,936 European ancestry individuals	NA	6p21.32	NR	rs2050188-G	NR	2E-14		0.07	[0.046-0.094] unit increase	Illumina [615763]	N
831	chr6	32339896	32339897	rs2050188	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	6p21.32	HLA-DRB5, C6orf10	rs2050188-T	0.673	9E-6	(EA)	0.0509	[0.028-0.073] unit increase	Affymetrix, Illumina [NR] (imputed)	N
831	chr6	32339896	32339897	rs2050188	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	6p21.32	HLA-DRB5, C6orf10	rs2050188-T	0.67	8E-9		1.06	[1.04-1.08]	Affymetrix, Illumina [NR] (imputed)	N
831	chr6	32339924	32339925	rs6913471	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	C6orf10	rs6913471-A	NR	1E-8		0.0182835	[0.012-0.025] unit decrease	Affymetrix [323123] (imputed)	N
831	chr6	32340105	32340106	rs2281276	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	C6orf10	rs2281276-G	NR	2E-11		0.0210706	[0.015-0.027] unit increase	Affymetrix [323858] (imputed)	N
831	chr6	32340105	32340106	rs2281276	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	C6orf10	rs2281276-G	NR	2E-10		0.0199503	[0.014-0.026] unit increase	Affymetrix [127266] (imputed)	N
831	chr6	32340105	32340106	rs2281276	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	C6orf10	rs2281276-G	NR	4E-15		0.0241531	[0.018-0.03] unit decrease	Affymetrix [323123] (imputed)	N
831	chr6	32340105	32340106	rs2281276	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	6p21.32	C6orf10	rs2281276-G	0.472805	6E-12		0.01778208	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
831	chr6	32340871	32340872	rs3129944	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs3129944-G	NR	4E-10		0.0217534	[0.015-0.029] unit decrease	Affymetrix [321169] (imputed)	N
831	chr6	32341207	32341208	rs9378202	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	C6orf10	rs9378202-C	NR	3E-9		0.0239944	[0.016-0.032] unit decrease	Affymetrix [323123] (imputed)	N
831	chr6	32341352	32341353	rs9268402	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	C6orf10	rs9268402-G	NR	2E-17		0.0239092	[0.018-0.029] unit decrease	Affymetrix [319769] (imputed)	N
831	chr6	32341352	32341353	rs9268402	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs9268402-G	NR	4E-17		0.0236172	[0.018-0.029] unit decrease	Affymetrix [319769] (imputed)	N
831	chr6	32341352	32341353	rs9268402	22751097	Lu X	2012-07-01	Nat Genet	Genome-wide association study in Han Chinese identifies four new susceptibility loci for coronary artery disease.	Coronary heart disease	1,515 Han Chinese ancestry cases, 5,019 Han Chinese ancestry controls	15,460 Han Chinese ancestry cases, 11,472 Han Chinese ancestry controls	6p21.32	BTNL2, C6orf10	rs9268402-G	0.59	3E-15		1.16	[1.12-1.20]	Affymetrix [~ 2200000] (imputed)	N
831	chr6	32341397	32341398	rs9391858	31566214	Kulminski AM	2019-09-30	J Gerontol A Biol Sci Med Sci	Quantitative and qualitative role of antagonistic heterogeneity in genetics of blood lipids.	Total cholesterol levels	29,902 European ancestry individuals	NA			rs9391858-G	0.14	3E-8		2.4	[1.56-3.24] unit increase	Affymetrix, Illumina [up to 2500000] (imputed)	N
831	chr6	32342118	32342119	rs73729220	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.32	NR	rs73729220-G	0.015	6E-7	(women)	0.670827	[0.41-0.93] unit increase	Affymetrix [up to 8900000] (imputed)	N
831	chr6	32342118	32342119	rs73729220	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.32	NR	rs73729220-G	0.015	4E-9		0.429629	[0.29-0.57] unit increase	Affymetrix [up to 8900000] (imputed)	N
831	chr6	32342536	32342537	rs3129945	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p21.32	NR	rs3129945-?	NR	3E-6		4.704	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
831	chr6	32343368	32343369	rs3117106	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	C6orf10	rs3117106-C	NR	4E-11		0.0274536	[0.019-0.036] unit increase	Affymetrix [323123] (imputed)	N
831	chr6	32345085	32345086	rs12528797	28107422	de Vries PS	2017-01-20	PLoS One	Comparison of HapMap and 1000 Genomes Reference Panels in a Large-Scale Genome-Wide Association Study.	Fibrinogen levels	91,953 European ancestry individuals (imputed to HapMap)		6p21.32	C6orf10, HCG23	rs12528797-?	NR	9E-9		0.0095	unit increase	Affymetrix, Illumina [2749429] (imputed)	N
831	chr6	32345282	32345283	rs7758128	21326295	Jin Y	2011-02-17	J Invest Dermatol	Genome-wide analysis identifies a quantitative trait locus in the MHC class II region associated with generalized vitiligo age of onset.	Vitiligo	1,339 European ancestry cases	677 European ancestry cases	6p21.32	BTNL2, C6orf10	rs7758128-A	0.06	8E-11				Illumina [520460]	N
831	chr6	32345594	32345595	rs2395153	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs2395153-G	NR	9E-12		0.0195615	[0.014-0.025] unit increase	Affymetrix [321114] (imputed)	N
831	chr6	32345594	32345595	rs2395153	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs2395153-G	NR	3E-19		0.0258131	[0.02-0.031] unit increase	Affymetrix [321169] (imputed)	N
831	chr6	32345688	32345689	rs2894254	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	6p21.32	C6orf10, BTNL2	rs2894254-T	NR	1E-13		0.238275	[0.18-0.3] unit increase	Illumina [at least 950000] (imputed)	N
831	chr6	32345688	32345689	rs2894254	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.32	NOTCH4, C6orf10	rs2894254-T	0.8879	1E-7	(EA)	0.0337	[0.021-0.046] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
831	chr6	32345688	32345689	rs2894254	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.32	BTNL2	rs2894254-T	0.8879	3E-9	(EA, men)	0.0557	[0.037-0.074] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
831	chr6	32345688	32345689	rs2894254	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6p21.32	BTNL2	rs2894254-T	0.888	6E-8	(men)	0.058	[0.037-0.079] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
831	chr6	32345688	32345689	rs2894254	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6p21.32	BTNL2	rs2894254-T	0.888	6E-8	(EA, men)	0.058	[0.037-0.079] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
831	chr6	32345688	32345689	rs2894254	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6p21.32	BTNL2	rs2894254-T	0.8879	6E-7	(EA)	0.0363	[0.022-0.051] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
831	chr6	32345688	32345689	rs2894254	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.32	NOTCH4, C6orf10	rs2894254-?	0.8879	5E-7	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
831	chr6	32345688	32345689	rs2894254	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.32	BTNL2	rs2894254-?	0.8879	9E-9	(men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
831	chr6	32345688	32345689	rs2894254	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.32	BTNL2	rs2894254-?	0.8879	9E-9	(EA, men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
831	chr6	32346490	32346491	rs9268435	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Serum alkaline phosphatase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	6p21.32	LOC101929163	rs9268435-?		1E-10		0.0358	[0.025-0.047] unit decrease	Illumina [31500000] (imputed)	N
831	chr6	32349556	32349557	rs3117103	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	6p21.32		rs3117103-A	0.859948	4E-9		0.0339726	[0.023-0.045] unit decrease	NR [11722792] (imputed)	N
831	chr6	32350453	32350454	rs28732201	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p21.32	NR	rs28732201-?	NR	6E-16		0.1787	[0.14-0.22] unit decrease	Illumina [at least 560000] (imputed)	N
831	chr6	32351565	32351566	rs6930777	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6p21.32		rs6930777-?	NR	5E-17		1.14262	[1.11-1.17]	NR [685523]	N
831	chr6	32352615	32352616	rs9268465	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HCG23	rs9268465-T	NR	6E-10		0.0196001	[0.013-0.026] unit decrease	Affymetrix [319769] (imputed)	N
831	chr6	32352615	32352616	rs9268465	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HCG23	rs9268465-T	NR	2E-8		0.0196784	[0.013-0.027] unit decrease	Affymetrix [323858] (imputed)	N
831	chr6	32352615	32352616	rs9268465	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HCG23	rs9268465-T	NR	1E-9		0.0191769	[0.013-0.025] unit decrease	Affymetrix [319769] (imputed)	N
831	chr6	32353917	32353918	rs9279623	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	6p21.32	HCG23	rs9279623-G	0.5081	7E-9		5.794	NR z score increase	Illumina [26237160] (imputed)	N
831	chr6	32354427	32354428	rs4424066	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	6p21.32	NR	rs4424066-A	0.578029598622173	7E-14		0.024764335	units decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
831	chr6	32357238	32357239	rs146003878	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs146003878-A	0.016	5E-11	(conditional)	1.678	[1.52-1.83]	Illumina [11270530] (imputed)	N
831	chr6	32358200	32358201	rs3129950	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.32	BTNL2	rs3129950-G	0.8899	4E-9	(men)	0.0593	[0.04-0.079] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
831	chr6	32358269	32358270	rs3117099	22688191	Bergen SE	2012-06-12	Mol Psychiatry	Genome-wide association study in a Swedish population yields support for greater CNV and MHC involvement in schizophrenia compared with bipolar disorder.	Bipolar disorder and schizophrenia	2,111 European ancestry schizophrenia cases, 836 European ancestry bipolar disorder cases, 2,535 European ancestry controls	NA	6p21.32	other genes, MHC	rs3117099-?	NR	3E-6		1.25	[NR]	Affymetrix [745006]	N
831	chr6	32358512	32358513	rs3117098	21804548	Hirota T	2011-07-31	Nat Genet	Genome-wide association study identifies three new susceptibility loci for adult asthma in the Japanese population.	Asthma	1,532 Japanese ancestry cases, 3,304 Japanese ancestry controls	5,639 Japanese ancestry cases, 24,608 Japanese ancestry controls	6p21.32	BTNL2	rs3117098-G	0.25	5E-12		1.16	[1.11-1.21]	Illumina [458847]	N
831	chr6	32358548	32358549	rs9348883	29903748	Debiec H	2018-06-14	J Am Soc Nephrol	Transethnic, Genome-Wide Analysis Reveals Immune-Related Risk Alleles and Phenotypic Correlates in Pediatric Steroid-Sensitive Nephrotic Syndrome.	Childhood steroid-sensitive nephrotic syndrome	244 European ancestry cases, 2,552 European ancestry controls, 56 African cases, 454 African controls, 85 Maghrebian cases, 261 Maghrebian controls	NA	6p21.32	LOC101929163, HCG23, BTNL2	rs9348883-T	0.94	9E-7	(conditioned on rs1063348 & rs28366266)	3.5	[2.13-5.83]	Illumina [at least 7529344] (imputed)	N
831	chr6	32358688	32358689	rs3117097	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling nervous	373,121 European ancestry individuals	NA	6p21.32	PSORS1C1	rs3117097-A	0.164022	4E-10		6.26	z score increase	NR [10847151] (imputed)	N
831	chr6	32359459	32359460	rs16870123	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	6p21.32	NR	rs16870123-?	NR	1E-10		6.408	NR z score decrease	Illumina [at least 830937] (imputed)	N
831	chr6	32361132	32361133	rs3817971	34871226	Kim SY	2021-11-01	Medicine (Baltimore)	Genome-wide association study identifies BTNL2 associated with atopic asthma in children.	Atopic asthma	243 East Asian ancestry child cases, 134 East Asian ancestry child controls	NA	6p21.32		rs3817971-A	NR	6E-7		3.509	[2.09-5.889]	Affymetrix [423461]	N
831	chr6	32361132	32361133	rs3817971	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p21.32	C6orf10, BTNL2	rs3817971-C	0.03	5E-6	(Turkish)	2.62	[1.71-4.01]	Illumina [up to 547389]	N
831	chr6	32361484	32361485	rs17202393	33592630	Herrera-Rivero M	2021-02-16	Thromb Haemost	Single- and Multimarker Genome-Wide Scans Evidence Novel Genetic Risk Modifiers for Venous Thromboembolism.	Venous thromboembolism	964 European ancestry cases, 899 European ancestry controls	NA	6p21.32	BTNL2, HCG23	rs17202393-A	NR	4E-38		0.03743	[0.02273-0.06163]	Illumina [484621]	N
831	chr6	32362010	32362011	rs114516436	27629369	Gao J	2016-09-15	Neuropsychopharmacology	Genome-Wide Association Study of Loneliness Demonstrates a Role for Common Variation.	Loneliness (multivariate analysis)	8,490 European ancestry individuals, 1,228 African American individuals, 867 Hispanic American individuals, 175 individuals	NA	6p21.32	BTNL2, HCG23, C6orf10	rs114516436-?	NR	2E-6	(EA)			Illumina [7205781] (imputed)	N
831	chr6	32363214	32363215	rs1980493	25936594	Tomer Y	2015-04-27	J Autoimmun	Genome wide identification of new genes and pathways in patients with both autoimmune thyroiditis and type 1 diabetes.	Type 1 diabetes and autoimmune thyroid diseases	346 European ancestry cases, 727 European ancestry controls	185 European ancestry cases, 340 European ancestry controls	6p21.32	BTNL2	rs1980493-G	NR	2E-20		2.5034		Illumina [514008]	N
831	chr6	32363214	32363215	rs1980493	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.32	BTNL2	rs1980493-G	0.1656	1E-48		2.87	[NR]	Illumina [242824]	N
831	chr6	32363214	32363215	rs1980493	19287509	Cui J	2009-03-14	Mol Med	Genome-wide association study of determinants of anti-cyclic citrullinated peptide antibody titer in adults with rheumatoid arthritis.	Anti-cyclic Citrullinated Peptide Antibody	531 European ancestry cases	849 European ancestry cases	6p21.32	HLA-DRA, BTNL2	rs1980493-?	0.13	5E-7				Affymetrix [97248]	N
831	chr6	32363815	32363816	rs2076530	22936702	Hofmann S	2012-08-30	Eur Respir J	Genome-wide association analysis reveals 12q13.3-q14.1 as new risk locus for sarcoidosis.	Sarcoidosis	637 European ancestry cases, 1,233 European ancestry controls	3,121 European ancestry cases, 4,284 European ancestry controls	6p21.32	BTNL2	rs2076530-?	NR	3E-11	(Chronic)			Affymetrix [677619]	N
831	chr6	32363843	32363844	rs9268480	19915573	Asano K	2009-11-15	Nat Genet	A genome-wide association study identifies three new susceptibility loci for ulcerative colitis in the Japanese population.	Ulcerative colitis	376 Japanese ancestry cases, 934 Japanese ancestry controls	376 Japanese ancestry cases, 1,097 Japanese ancestry controls	6p21.32	BTNL2	rs9268480-G	0.91	3E-6		1.82	[1.43-2.33]	Illumina [513923]	N
831	chr6	32363954	32363955	rs2076529	32766473	Yoshida K	2020-05-19	Hepatol Commun	Genome-Wide Association Study of Lean Nonalcoholic Fatty Liver Disease Suggests Human Leukocyte Antigen as a Novel Candidate Locus.	Lean nonalcoholic fatty liver disease	275 Japanese ancestry cases, 1,411 Japanese ancestry controls	NA	6p21.32	NR	rs2076529-?	NR	2E-7		1.66	[1.37-2.00]	Affymetrix [NR]	N
831	chr6	32363954	32363955	rs2076529	20935629	Heid IM	2010-10-10	Nat Genet	Meta-analysis identifies 13 new loci associated with waist-hip ratio and reveals sexual dimorphism in the genetic basis of fat distribution.	Waist-hip ratio	Up to 77,167 European ancestry individuals	Up to 113,636 European ancestry individuals	6p21.32	BTNL2	rs2076529-C	0.43	4E-7		0.02	[NR] unit increase	Affymetrix, Illumina, Perlegen [up to 2850269] (imputed)	N
831	chr6	32366420	32366421	rs4248166	29534301	Nishida N	2018-03-13	Hepatology	Key HLA-DRB1-DQB1 haplotypes and role of the BTNL2 gene for response to a hepatitis B vaccine.	Response to hepatitis B vaccine	107 Japanese ancestry low responder individuals, 351 Japanese ancestry intermediate responder individuals, 735 Japanese ancestry high responder individuals	NA	6p21.32	BTNL2	rs4248166-?		1E-12		0.124	unit decrease	Affymetrix [427664]	N
831	chr6	32366420	32366421	rs4248166	26819262	Zhou Y	2016-01-27	Mult Scler	Genetic loci for Epstein-Barr virus nuclear antigen-1 are associated with risk of multiple sclerosis.	Epstein Barr virus nuclear antigen 1 IgG levels	1,243 parents and up to 2,356 children from 992 families, 1,956 Mexican American individuals		6p21.32	NR	rs4248166-T		9E-11	(Mexican American)	0.16	unit decrease	Illumina [up to 2428201] (imputed)	N
831	chr6	32366420	32366421	rs4248166	26819262	Zhou Y	2016-01-27	Mult Scler	Genetic loci for Epstein-Barr virus nuclear antigen-1 are associated with risk of multiple sclerosis.	Epstein Barr virus nuclear antigen 1 IgG levels	1,243 parents and up to 2,356 children from 992 families, 1,956 Mexican American individuals		6p21.32	NR	rs4248166-T		1E-9		0.16	unit decrease	Illumina [up to 2428201] (imputed)	N
831	chr6	32367016	32367017	rs3117116	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein BGLAP	5,367 Icelandic ancestry individuals	NA	6p21.32		rs3117116-G	0.2246	5E-20		0.208543	[0.16-0.25] unit decrease	Illumina [7506463] (imputed)	N
831	chr6	32368086	32368087	rs3817963	27501781	Shiraishi K	2016-08-09	Nat Commun	Association of variations in HLA class II and other loci with susceptibility to EGFR-mutated lung adenocarcinoma.	EGFR mutation-positive lung adenocarcinoma	663 Japanese ancestry cases, 4,367 Japanese ancestry controls	2,510 Japanese ancestry cases, 10,791 Japanese ancestry controls	6p21.32	BTNL2	rs3817963-G	0.316	1E-16		1.29	[1.21-1.37]	Illumina [NR] (imputed)	N
831	chr6	32368086	32368087	rs3817963	23472185	Mero IL	2013-03-05	PLoS One	Oligoclonal band status in Scandinavian multiple sclerosis patients is associated with specific genetic risk alleles.	Multiple sclerosis (OCB status)	1,367 European ancestry OCB positive cases, 161 European ancestry OCB negative cases, 428 European ancestry controls	NA	6p21.32	BTNL2	rs3817963-?	NR	8E-6	(OCB positive vs. controls)	1.52	[1.27-1.79]	Illumina [495970]	N
831	chr6	32368086	32368087	rs3817963	23472185	Mero IL	2013-03-05	PLoS One	Oligoclonal band status in Scandinavian multiple sclerosis patients is associated with specific genetic risk alleles.	Multiple sclerosis (OCB status)	1,367 European ancestry OCB positive cases, 161 European ancestry OCB negative cases	3,029 European ancestry OCB positive cases, 374 European ancestry OCB negative cases	6p21.32	BTNL2	rs3817963-?	NR	6E-10		1.61	[1.38-1.87]	Illumina [495970]	N
831	chr6	32368086	32368087	rs3817963	23321320	Urabe Y	2013-01-12	J Hepatol	A genome-wide association study of HCV-induced liver cirrhosis in the Japanese population identifies novel susceptibility loci at the MHC region.	Hepatitis C induced liver cirrhosis	682 Japanese ancestry cases, 1,045 Japanese ancestry controls	936 Japanese ancestry cases, 3,809 Japanese ancestry controls	6p21.32	BTNL2	rs3817963-A	0.315	1E-8		1.3	[1.18-1.42]	Illumina [431618]	N
831	chr6	32368086	32368087	rs3817963	22797724	Shiraishi K	2012-07-15	Nat Genet	A genome-wide association study identifies two new susceptibility loci for lung adenocarcinoma in the Japanese population.	Lung adenocarcinoma	1,695 Japanese ancestry cases, 5,333 Japanese ancestry controls	4,334 Japanese ancestry cases, 8,202 Japanese ancestry controls	6p21.32	BTNL2	rs3817963-G	0.318	3E-10		1.18	[1.12-1.24]	Illumina [538166]	N
831	chr6	32368557	32368558	rs9268485	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	BTNL2	rs9268485-C	NR	1E-22		0.0275591	[0.022-0.033] unit decrease	Affymetrix [319769] (imputed)	N
831	chr6	32368557	32368558	rs9268485	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	BTNL2	rs9268485-C	NR	2E-12		0.0220667	[0.016-0.028] unit decrease	Affymetrix [323858] (imputed)	N
831	chr6	32368557	32368558	rs9268485	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	BTNL2	rs9268485-C	NR	4E-22		0.0271651	[0.022-0.033] unit decrease	Affymetrix [319769] (imputed)	N
831	chr6	32368557	32368558	rs9268485	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	BTNL2	rs9268485-C	NR	3E-11		0.0208559	[0.015-0.027] unit decrease	Affymetrix [127266] (imputed)	N
831	chr6	32368557	32368558	rs9268485	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	BTNL2	rs9268485-C	NR	3E-13		0.0204722	[0.015-0.026] unit increase	Affymetrix [321016] (imputed)	N
831	chr6	32368557	32368558	rs9268485	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	BTNL2	rs9268485-C	NR	2E-12		0.0216048	[0.016-0.028] unit increase	Affymetrix [323123] (imputed)	N
831	chr6	32368559	32368560	rs9268486	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs9268486-T	0.248	8E-27	(conditional)	1.384	[1.33-1.44]	Illumina [11270530] (imputed)	N
831	chr6	32369487	32369488	rs3763305	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	6p21.32		rs3763305-G	0.949	4E-9				Affymetrix [10369434] (imputed)	N
831	chr6	32369487	32369488	rs3763305	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.32	BTNL2	rs3763305-A	0.051434	4E-15		0.041934814	[0.031-0.052] unit decrease	Affymetrix [93095623] (imputed)	N
831	chr6	32370586	32370587	rs9461741	25569183	Vijai J	2015-01-08	Nat Commun	A genome-wide association study of marginal zone lymphoma shows association to the HLA region.	Marginal zone lymphoma	825 European ancestry cases, 6,221 European ancestry controls	456 European ancestry cases, 906 European ancestry controls	6p21.32	BTNL2	rs9461741-C	0.018	4E-15		2.66	[2.08-3.39]	Illumina [611856]	N
831	chr6	32370615	32370616	rs2076525	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	BTNL2	rs2076525-C	NR	9E-15		0.0237827	[0.018-0.03] unit increase	Affymetrix [321169] (imputed)	N
831	chr6	32370834	32370835	rs2076523	29903748	Debiec H	2018-06-14	J Am Soc Nephrol	Transethnic, Genome-Wide Analysis Reveals Immune-Related Risk Alleles and Phenotypic Correlates in Pediatric Steroid-Sensitive Nephrotic Syndrome.	Childhood steroid-sensitive nephrotic syndrome	56 African cases, 454 African controls	NA	6p21.32	BTNL2	rs2076523-?	NR	2E-9		4.8	[2.9-7.9]	Illumina [at least 7529344] (imputed)	N
831	chr6	32373184	32373185	rs10947260	28369058	Folkersen L	2017-04-03	PLoS Genet	Mapping of 79 loci for 83 plasma protein biomarkers in cardiovascular disease.	Blood protein levels in cardiovascular risk	3,394 European ancestry individuals	2,639 individuals	6p21.32	NOTCH4, AGER, ATF6B	rs10947260-C	0.1	6E-9		0.25	unit increase	Illumina [5270624] (imputed)	N
831	chr6	32373231	32373232	rs10947261	23850713	Yang SK	2013-07-14	Gut	Genome-wide association study of Crohn's disease in Koreans revealed three new susceptibility loci and common attributes of genetic susceptibility across ethnic populations.	Crohn's disease	532 Korean ancestry cases, 733 Korean ancestry controls	1,779 Korean ancestry cases, 1,709 Korean ancestry controls	6p21.32	HLA-DRA, HLA-DRB5, BTNL2, HLA-DRB1, HLA-DQA1	rs10947261-T	0.294	3E-12		1.36	[1.25-1.49]	Illumina [5664371] (imputed)	N
831	chr6	32373311	32373312	rs10947262	20305777	Nakajima M	2010-03-18	PLoS One	New sequence variants in HLA class II/III region associated with susceptibility to knee osteoarthritis identified by genome-wide association study.	Knee osteoarthritis	899 Japanese ancestry cases, 3,396 Japanese ancestry controls	167 Japanese ancestry cases, 347 Japanese ancestry controls, 813 European ancestry  cases, 1,071 European ancestry controls,	6p21.32	HLA-DQA2, HLA-DQB1, BTNL2	rs10947262-T	0.42	5E-9		1.31	[1.20-1.44]	Illumina [459393]	N
831	chr6	32373697	32373698	rs3806156	20410501	Jin Y	2010-04-21	N Engl J Med	Variant of TYR and autoimmunity susceptibility loci in generalized vitiligo.	Vitiligo	1,392 European ancestry cases, 2,629 European ancestry controls	647 European ancestry cases, 1,056 European ancestry controls, 183 European ancestry trios, 1,383 European ancestry individuals from 332 families	6p21.32	HLA-DRA, BTNL2, HLA-DQA1	rs3806156-T	0.37	7E-19		1.42	[1.32-1.54]	Illumina [520460]	N
831	chr6	32373800	32373801	rs3806157	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	BTNL2	rs3806157-G	NR	4E-8		0.0162252	[0.01-0.022] unit increase	Affymetrix [321114] (imputed)	N
831	chr6	32374594	32374595	rs2395158	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	6p21.32	BTNL2	rs2395158-A	0.830652	5E-40		0.0345684	[0.029-0.04] unit increase	Affymetrix [NR] (imputed)	N
832	chr6	32375972	32375973	rs3763309	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls	NA	6p21.32	HLA-DRA, BTNL2	rs3763309-A	0.21	1E-18		0.13	[0.091-0.169] unit increase	Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
832	chr6	32375972	32375973	rs3763309	24449572	Orozco G	2014-01-01	Arthritis Rheumatol	Novel rheumatoid arthritis susceptibility locus at 22q12 identified in an extended UK genome-wide association study.	Rheumatoid arthritis	3,034 European ancestry cases, 5,271 European ancestry controls	4,726 European ancestry cases, 2,625 European ancestry controls	6p21.32	HLA-DRB1	rs3763309-?		2E-124		2.3	[2.14-2.46]	Affymetrix, Illumina [1831729] (imputed)	N
832	chr6	32376175	32376176	rs3763311	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Cancer	56,634 White British ancestry cases, 218,196 White British ancestry controls	NA	6p21.32		rs3763311-?	NR	1E-5		0.967842	[0.95-0.98]	NR [688737]	N
832	chr6	32376347	32376348	rs3763312	26039976	Wei Z	2015-06-17	Sci Rep	Genome-Wide Association Studies of HIV-1 Host Control in Ethnically Diverse Chinese Populations.	HIV-1 viral setpoint	326 Han Chinese ancestry cases, 58 Dai Chinese ancestry cases, 40 Jingpo Chinese ancestry cases, 83 Uygur Chinese ancestry cases, 11 Hui Chinese ancestry cases, 20 East Asian cases	NA	6p21.32	BTNL2, HLA-DRA	rs3763312-A	0.15	6E-6	(Han)	0.4002	unit decrease	Illumina [up to 528294]	N
832	chr6	32376359	32376360	rs17208853	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Skin reflectance (Melanin index)	720 South Asian ancestry individuals		6p21.32	NR	rs17208853-C	NR	8E-6		0.649209	[0.36-0.93] unit decrease	Affymetrix, Illumina [at least 398118] (imputed)	N
832	chr6	32376470	32376471	rs3763313	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.32		rs3763313-C	0.17885300000000004	1E-26		1.0591807	[1.05-1.08]	Affymetrix, Illumina [9851866] (imputed)	N
832	chr6	32376470	32376471	rs3763313	20041166	Fellay J	2009-12-24	PLoS Genet	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	6p21.32	NOTCH4, BTNL2	rs3763313-?	NR	2E-6	(progression)			Illumina [NR]	N
832	chr6	32376516	32376517	rs9268500	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (drugs affecting bone structure and mineralization)	7,870 European ancestry cases, 207,798 European ancestry controls	NA	6p21.32	BTNL2	rs9268500-T	0.0508279	2E-8		0.20306516	[0.13-0.27] unit increase	Affymetrix [7288503] (imputed)	N
832	chr6	32376787	32376788	rs3763317	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	BTNL2	rs3763317-T	NR	1E-12		0.0200715	[0.015-0.026] unit increase	Affymetrix [319769] (imputed)	N
832	chr6	32376787	32376788	rs3763317	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	BTNL2	rs3763317-T	NR	1E-10		0.0202983	[0.014-0.026] unit increase	Affymetrix [323858] (imputed)	N
832	chr6	32376787	32376788	rs3763317	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	BTNL2	rs3763317-T	NR	6E-12		0.0194272	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
832	chr6	32376787	32376788	rs3763317	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	BTNL2	rs3763317-T	NR	2E-9		0.0188282	[0.013-0.025] unit increase	Affymetrix [127266] (imputed)	N
832	chr6	32376787	32376788	rs3763317	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	BTNL2	rs3763317-T	NR	2E-14		0.0235125	[0.017-0.03] unit decrease	Affymetrix [323123] (imputed)	N
832	chr6	32376787	32376788	rs3763317	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	BTNL2	rs3763317-T	NR	2E-13		0.0209669	[0.015-0.027] unit increase	Affymetrix [321169] (imputed)	N
832	chr6	32376787	32376788	rs3763317	23028341	Yang X	2012-09-13	PLoS Genet	Genome-wide association study for serum complement C3 and C4 levels in healthy Chinese subjects.	Complement C3 and C4 levels	1,999 Han Chinese ancestry male individuals	1,496 Han Chinese ancestry male individuals	6p21.32	HLA-DRB	rs3763317-C	0.37	9E-66	(Serum level of C4)	0.12	[0.10-0.14] g/L increase	Illumina [1940245] (imputed)	N
832	chr6	32377052	32377053	rs116835963	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs116835963-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
832	chr6	32377407	32377408	rs9268505	33713768	Akenroye AT	2021-03-10	J Allergy Clin Immunol	Genome-wide Association study of Asthma, Total IgE, and Lung function in a Cohort of Peruvian Children.	Serum IgE levels	727 Peruvian individuals	NA	6p21.32		rs9268505-?	NR	6E-8		0.211	unit increase	Illumina [NR] (imputed)	N
832	chr6	32379313	32379313	rs574027387	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs574027387-A	0.673	3E-23	(conditional)	1.376	[1.31-1.44]	Illumina [11270530] (imputed)	N
832	chr6	32379382	32379383	rs3129962	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	6p21.32	BTNL2	rs3129962-G	0.870649	8E-18		0.0243898	[0.019-0.03] unit increase	Affymetrix [NR] (imputed)	N
832	chr6	32379488	32379489	rs9268516	33328473	Ahluwalia TS	2020-12-16	Nat Commun	FUT2-ABO epistasis increases the risk of early childhood asthma and Streptococcus pneumoniae respiratory illnesses.	Childhood asthma with severe exacerbations	2,866 European ancestry cases,  65,415 European ancestry controls	NA	6p21.32	NR	rs9268516-A	NR	5E-10		0.1936	[0.13-0.25] unit increase	Illumina [up to 525976] (imputed)	N
832	chr6	32379488	32379489	rs9268516	23028483	Ramasamy A	2012-09-28	PLoS One	Genome-wide association studies of asthma in population-based cohorts confirm known and suggested loci and identify an additional association near HLA.	Asthma	1,716 European ancestry cases, 16,888 European ancestry controls	4,035 European ancestry cases, 11,251 European ancestry controls	6p21.32	HLA-DRA, BTNL2	rs9268516-T	0.24	1E-8		1.15	[1.10-1.21]	Affymetrix, Illumina [~ 2200000] (imputed)	N
832	chr6	32379735	32379736	rs9405098	23321320	Urabe Y	2013-01-12	J Hepatol	A genome-wide association study of HCV-induced liver cirrhosis in the Japanese population identifies novel susceptibility loci at the MHC region.	Hepatitis C induced liver cirrhosis	682 Japanese ancestry cases, 1,045 Japanese ancestry controls	936 Japanese ancestry cases, 3,809 Japanese ancestry controls	6p21.32	intergenic	rs9405098-A	0.253	1E-10		1.37	[1.24-1.51]	Illumina [431618]	N
832	chr6	32380908	32380909	rs9380294	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p21.32	BTNL2, HLA-DRA	rs9380294-C	0.01	7E-6	(EA)	4.76	[2.25-10.07]	Illumina [up to 547389]	N
832	chr6	32381735	32381736	rs7759742	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI in non-smokers	75,379 European ancestry women, 45,811 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	6p21.32	BTNL2	rs7759742-A	0.5117	1E-7		0.0144	[0.0091-0.0197] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
832	chr6	32381735	32381736	rs7759742	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (joint analysis main effects and smoking interaction)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	6p21.32	BTNL2	rs7759742-A	0.5117	1E-8				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
832	chr6	32381735	32381736	rs7759742	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	6p21.32	BTNL2	rs7759742-A	0.5117	3E-6	(men)	0.0248	[0.014-0.035] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
832	chr6	32381735	32381736	rs7759742	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	6p21.32	BTNL2	rs7759742-A	0.5117	1E-9		0.0217	[0.015-0.029] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
832	chr6	32381735	32381736	rs7759742	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex x age interaction (4df test)	up to 43,776 European ancestry men aged <50, up to 50,526 European ancestry women aged <50, up to 69,944 European ancestry men aged >50, up to 88,129 European ancestry women aged >50	NA	6p21.32	NR	rs7759742-A	0.509001212874385	2E-12				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
832	chr6	32381735	32381736	rs7759742	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p21.32	BTNL2	rs7759742-A	0.517	2E-11		0.0224	[0.016-0.029] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
832	chr6	32381735	32381736	rs7759742	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p21.32	BTNL2	rs7759742-A	0.5158	5E-8	(women)	0.0241	[0.015-0.033] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
832	chr6	32381735	32381736	rs7759742	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p21.32	BTNL2	rs7759742-A	0.5154	4E-6	(men)	0.0223	[0.013-0.032] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
832	chr6	32381735	32381736	rs7759742	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p21.32	BTNL2	rs7759742-A	0.511	4E-11	(EA)	0.0226	[0.016-0.029] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
832	chr6	32381735	32381736	rs7759742	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p21.32	BTNL2	rs7759742-A	0.5107	2E-7	(EA, women)	0.0237	[0.015-0.033] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
832	chr6	32381735	32381736	rs7759742	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p21.32	BTNL2	rs7759742-A	0.5106	5E-6	(EA, men)	0.0226	[0.013-0.032] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
832	chr6	32382272	32382272	rs143325653	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Scarlet fever	6,812 European ancestry cases, 113,837 European ancestry controls	NA	6p21.32	NR	rs143325653-?	NR	6E-7		0.0908	[0.055-0.126] unit increase	Illumina [at least 560000] (imputed)	N
832	chr6	32382272	32382272	rs143325653	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p21.32	NR	rs143325653-?	NR	3E-20		0.1121	[0.088-0.136] unit decrease	Illumina [at least 560000] (imputed)	N
832	chr6	32383049	32383050	rs4959027	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	Blood glucose levels	291,107 British ancestry individuals	NA	6p21.32	TBC1D22B	rs4959027-A	0.234405	5E-6		0.00399988	[0.0023-0.0057] unit decrease	Affymetrix [9463307] (imputed)	N
832	chr6	32383049	32383050	rs4959027	23449627	Cousminer DL	2013-02-27	Hum Mol Genet	Genome-wide association and longitudinal analyses reveal genetic loci linking pubertal height growth, pubertal timing and childhood adiposity.	Pubertal anthropometrics	up to 5,043 European ancestry males, up to 5,756 European ancestry females	NA	6p21.32	TAP2, HLA-DRA	rs4959027-G	0.82	9E-7	(Pubertal growth)	0.09	[0.057-0.123] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
832	chr6	32383137	32383138	rs4959028	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Effector Memory CD4+ T cell %CD4+ T cell	3,427 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs4959028-G	0.22877	3E-10		0.2111	[0.15-0.28] unit increase	Illumina [18349913] (imputed)	N
832	chr6	32383207	32383208	rs6930571	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.32	BTNL2	rs6930571-T	0.1659	2E-8		0.0561	[0.037-0.076] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
832	chr6	32383572	32383573	rs6912701	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.32	NR	rs6912701-T	0.014	6E-7	(women)	0.704901	[0.43-0.98] unit increase	Affymetrix [up to 8900000] (imputed)	N
832	chr6	32383572	32383573	rs6912701	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.32	NR	rs6912701-T	0.014	3E-9		0.454746	[0.31-0.6] unit increase	Affymetrix [up to 8900000] (imputed)	N
832	chr6	32384526	32384527	rs9268541	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6p21.32		rs9268541-C	0.054698	1E-10		0.03155108	[0.022-0.041] unit increase	Affymetrix [93095623] (imputed)	N
832	chr6	32384891	32384892	rs72847996	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs72847996-A	0.19	4E-8		4.04	[3.10-5.28]	Illumina [NR] (imputed)	N
832	chr6	32384932	32384933	rs80032720	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	IgA nephropathy	1,180 East Asian ancestry cases, 899 East Asian ancestry controls	NA			rs80032720-A	NR	9E-8		0.524129	[0.33-0.72] unit decrease	Illumina [NR] (imputed)	N
832	chr6	32385398	32385399	rs3135377	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	BTNL2	rs3135377-A	NR	2E-8		0.0200714	[0.013-0.027] unit increase	Affymetrix [323123] (imputed)	N
832	chr6	32387808	32387809	rs2395163	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	BTNL2	rs2395163-C	NR	7E-9		0.0197156	[0.013-0.026] unit increase	Affymetrix [321114] (imputed)	N
832	chr6	32387808	32387809	rs2395163	22451204	Pankratz N	2012-03-01	Ann Neurol	Meta-analysis of Parkinson's disease: identification of a novel locus, RIT2.	Parkinson's disease	4,238 European ancestry cases, 4,239 European ancestry controls	3,738 European ancestry cases, 2,111 European ancestry controls	6p21.32	LOC642072	rs2395163-?	NR	3E-11		1.24	[NR]	Illumina [2500000] (imputed)	N
832	chr6	32388274	32388275	rs2395166	33736632	Zeng Z	2021-03-18	BMC Med Genomics	Genome-wide association study identifies new loci associated with risk of HBV infection and disease progression.	Persistent hepatitis B virus infection	587 Chinese ancestry persistent cases, 275 Chinese ancestry clearance controls	NA	6p21.32	HLA-DRA	rs2395166-C	0.2182	1E-7		0.4534	NR	Affymetrix [607153]	N
832	chr6	32388274	32388275	rs2395166	28424481	Sugiura-Ogasawara M	2017-04-20	J Hum Genet	The first genome-wide association study identifying new susceptibility loci for obstetric antiphospholipid syndrome.	Obstetric antiphospholipid syndrome	115 Japanese ancestry female cases, 419 Japanese ancestry male and female controls	NA	6p21.32	HLA-DRA	rs2395166-T	0.71	3E-6		2.564103	[1.69-3.85]	Affymetrix [426344]	N
832	chr6	32388316	32388317	rs9461744	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4+ CD8dim T cell Absolute Count	3,652 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9461744-G	0.21272	7E-12		0.2434	[0.17-0.31] unit increase	Illumina [18427348] (imputed)	N
832	chr6	32388316	32388317	rs9461744	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4+ CD8dim T cell %lymphocyte	3,668 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9461744-G	0.21247	8E-19		0.3015	[0.24-0.37] unit increase	Illumina [18430788] (imputed)	N
832	chr6	32388316	32388317	rs9461744	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4+ CD8dim T cell %leukocyte	3,668 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9461744-G	0.21247	1E-16		0.2827	[0.22-0.35] unit increase	Illumina [18430788] (imputed)	N
832	chr6	32388545	32388546	rs2213581	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	6p21.32	BTNL2	rs2213581-T	0.2346	2E-11		0.002	[0.0014-0.0026] unit increase	Affymetrix [15275733] (imputed)	N
832	chr6	32389142	32389143	rs116869525	26151496	Chen PL	2015-07-07	Nat Commun	Genetic determinants of antithyroid drug-induced agranulocytosis by human leukocyte antigen genotyping and genome-wide association study.	Thionamide-induced agranulocytosis in Graves' disease	21 East Asian ancestry cases with agranulocytosis, 662 East Asian ancestry cases without agranulocytosis	21 East Asian ancestry cases with agranulocytosis, 546 East Asian ancestry cases without agranulocytosis	6p21.32	HLA-DRB1*08:03	rs116869525-T	0.083	1E-8	(trend)	4.16	[2.50-6.90] (allelic)	Affymetrix [522980]	N
832	chr6	32389254	32389255	rs3135365	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PRTN3	5,361 Icelandic ancestry individuals	NA	6p21.32		rs3135365-C	0.2736	5E-56		0.319492	[0.28-0.36] unit decrease	Illumina [7506463] (imputed)	N
832	chr6	32389254	32389255	rs3135365	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p21.32	BTNL2	rs3135365-C	0.022	9E-6		0.202	[0.11-0.29] unit increase	Affymetrix, Illumina [7374092] (imputed)	N
832	chr6	32389304	32389305	rs9268557	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.32		rs9268557-T	0.525	2E-25				Affymetrix [10369434] (imputed)	N
832	chr6	32389304	32389305	rs9268557	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.32		rs9268557-T	0.525	3E-16				Affymetrix [10369434] (imputed)	N
832	chr6	32389304	32389305	rs9268557	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.32		rs9268557-T	0.525	1E-45				Affymetrix [10369434] (imputed)	N
832	chr6	32389304	32389305	rs9268557	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	BTNL2	rs9268557-C	NR	1E-12		0.0202435	[0.015-0.026] unit increase	Affymetrix [321169] (imputed)	N
832	chr6	32389304	32389305	rs9268557	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p21.32	NR	rs9268557-?	NR	4E-15		0.0947	[0.071-0.118] unit increase	Illumina [at least 560000] (imputed)	N
832	chr6	32389304	32389305	rs9268557	26272072	Jiang X	2015-08-13	Rheumatology (Oxford)	An Immunochip-based interaction study of contrasting interaction effects with smoking in ACPA-positive versus ACPA-negative rheumatoid arthritis.	ACPA-positive rheumatoid arthritis (smoking interaction)	340 European ancestry never-smoker cases, 493 European ancestry ever-smoker cases, 746 European ancestry never-smoker controls, 994 European ancestry ever-smoker controls	187 European ancestry never-smoker cases, 421 European ancestry ever-smoker cases, 461 European ancestry never-smoker controls, 447 European ancestry ever-smoker controls	6p21.32	NR	rs9268557-?	NR	3E-10	(adjusted for HLA shared epitope)	2.5	[1.92-3.7]	Illumina [133648] (imputed)	N
832	chr6	32389390	32389391	rs9268559	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	6p21.32		rs9268559-?	NR	5E-8				Affymetrix [NR] (imputed)	N
832	chr6	32389390	32389391	rs9268559	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	6p21.32		rs9268559-G	0.023054	2E-12		0.054041814	[0.039-0.069] unit decrease	Affymetrix [93095623] (imputed)	N
832	chr6	32389390	32389391	rs9268559	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.32	NR	rs9268559-G	0.013	4E-7	(women)	0.762177	[0.47-1.05] unit increase	Affymetrix [up to 8900000] (imputed)	N
832	chr6	32389390	32389391	rs9268559	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.32	NR	rs9268559-G	0.013	2E-8		0.442409	[0.29-0.6] unit increase	Affymetrix [up to 8900000] (imputed)	N
832	chr6	32389511	32389512	rs9268560	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	BTNL2	rs9268560-C	NR	5E-17		0.023445	[0.018-0.029] unit decrease	Affymetrix [319769] (imputed)	N
832	chr6	32389511	32389512	rs9268560	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	BTNL2	rs9268560-C	NR	1E-10		0.0201058	[0.014-0.026] unit decrease	Affymetrix [323858] (imputed)	N
832	chr6	32389511	32389512	rs9268560	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	BTNL2	rs9268560-C	NR	1E-15		0.0224411	[0.017-0.028] unit decrease	Affymetrix [319769] (imputed)	N
832	chr6	32389511	32389512	rs9268560	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	BTNL2	rs9268560-C	NR	4E-9		0.0183123	[0.012-0.024] unit decrease	Affymetrix [127266] (imputed)	N
832	chr6	32389511	32389512	rs9268560	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	BTNL2	rs9268560-C	NR	3E-15		0.0220981	[0.017-0.028] unit increase	Affymetrix [321016] (imputed)	N
832	chr6	32389511	32389512	rs9268560	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	BTNL2	rs9268560-C	NR	1E-17		0.0260901	[0.02-0.032] unit increase	Affymetrix [323123] (imputed)	N
832	chr6	32389542	32389543	rs28732209	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	334,468 European ancestry, NR ancestry individuals	NA	6p21.32		rs28732209-?	NR	5E-8				Affymetrix [NR] (imputed)	N
832	chr6	32389544	32389545	rs3135364	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C4A;C4B	5,353 Icelandic ancestry individuals	NA	6p21.32		rs3135364-G	0.2232	3E-39		0.289407	[0.25-0.33] unit decrease	Illumina [7506463] (imputed)	N
832	chr6	32389544	32389545	rs3135364	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	6p21.32	NR	rs3135364-G	0.221478	4E-13		0.0590942	[0.043-0.075] unit increase	Affymetrix [17914406] (imputed)	N
832	chr6	32389647	32389648	rs3135363	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	BTNL2	rs3135363-G	NR	2E-11		0.0237256	[0.017-0.031] unit decrease	Affymetrix [323858] (imputed)	N
832	chr6	32389647	32389648	rs3135363	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	BTNL2	rs3135363-G	NR	1E-10		0.022911	[0.016-0.03] unit decrease	Affymetrix [127266] (imputed)	N
832	chr6	32389647	32389648	rs3135363	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on CD33- HLA DR+	1,635 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs3135363-G	0.17311	2E-13		0.3649	[0.27-0.46] unit increase	Illumina [16999305] (imputed)	N
832	chr6	32389647	32389648	rs3135363	24282030	Pan L	2013-11-28	Hum Mol Genet	A genome-wide association study identifies polymorphisms in the HLA-DR region associated with non-response to hepatitis B vaccination in Chinese Han populations.	Hepatitis B vaccine response	108 Han Chinese ancestry high-responder cases, 77 Han Chinese ancestry non-responder controls	1,336 Han Chinese ancestry high-responder cases, 420 Han Chinese ancestry non-responder controls	6p21.32	HLA-DR	rs3135363-?	NR	8E-7		1.51	[1.28-1.78]	Illumina [588026]	N
832	chr6	32389647	32389648	rs3135363	23321320	Urabe Y	2013-01-12	J Hepatol	A genome-wide association study of HCV-induced liver cirrhosis in the Japanese population identifies novel susceptibility loci at the MHC region.	Hepatitis C induced liver cirrhosis	682 Japanese ancestry cases, 1,045 Japanese ancestry controls	936 Japanese ancestry cases, 3,809 Japanese ancestry controls	6p21.32	intergenic	rs3135363-C	0.702	1E-10		1.37	[1.24-1.51]	Illumina [431618]	N
832	chr6	32389647	32389648	rs3135363	21764829	Png E	2011-07-15	Hum Mol Genet	A genome-wide association study of hepatitis B vaccine response in an Indonesian population reveals multiple independent risk variants in the HLA region.	Hepatitis B vaccine response	1,683 Indonesian ancestry individuals	1,931 Indonesian ancestry individuals	6p21.32	HLA-DR	rs3135363-?	NR	7E-22		1.53	[1.35-1.74]	Illumina [455508]	N
832	chr6	32390331	32390332	rs2894255	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	BTNL2	rs2894255-T	NR	2E-17		0.0362414	[0.028-0.045] unit decrease	Affymetrix [323858] (imputed)	N
832	chr6	32390331	32390332	rs2894255	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	BTNL2	rs2894255-T	NR	7E-16		0.0344273	[0.026-0.043] unit decrease	Affymetrix [127266] (imputed)	N
832	chr6	32390331	32390332	rs2894255	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p21.32	BTNL2	rs2894255-T	NR	2E-11		0.0284523	[0.02-0.037] unit decrease	Affymetrix [323858] (imputed)	N
832	chr6	32390577	32390578	rs3135359	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p21.32	HLA-DRADQA1	rs3135359-C	0.71	9E-21		1.21	[1.18-1.24]	Illumina [at least 560000] (imputed)	N
832	chr6	32392756	32392757	rs6935999	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.32	NR	rs6935999-A	0.011	8E-8	(women)	0.839311	[0.54-1.14] unit increase	Affymetrix [up to 8900000] (imputed)	N
832	chr6	32392756	32392757	rs6935999	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.32	NR	rs6935999-A	0.011	3E-11		0.563282	[0.4-0.73] unit increase	Affymetrix [up to 8900000] (imputed)	N
832	chr6	32392876	32392877	rs3135353	33941608	Khan A	2021-05-03	J Am Soc Nephrol	Medical Records-Based Genetic Studies of the Complement System.	Complement C4 levels	3,247 European ancestry individuals, 600 African ancestry individuals, 151 East Asian ancestry individuals	NA	6p21.32	C4	rs3135353-C	0.15	2E-33	(EA)	0.4	[0.34-0.45] unit increase	NR [NR] (imputed)	N
832	chr6	32392876	32392877	rs3135353	33941608	Khan A	2021-05-03	J Am Soc Nephrol	Medical Records-Based Genetic Studies of the Complement System.	Complement C4 levels	3,247 European ancestry individuals, 600 African ancestry individuals, 151 East Asian ancestry individuals	NA	6p21.32	C4	rs3135353-C	0.12	5E-35		0.4	[0.34-0.45] unit increase	NR [NR] (imputed)	N
832	chr6	32392980	32392981	rs3135350	24962563	Rubicz R	2014-07-01	Genet Epidemiol	Genome-wide genetic and transcriptomic investigation of variation in antibody response to dietary antigens.	Food antigen IgG levels	1,367 Mexican Americans from 63 families	NA	6p21.32	NOTCH4, HLA-DRA, BTNL2	rs3135350-G	0.046	9E-8	(Gliadin)	0.51	[NR] unit increase	Illumina [944565] (imputed)	N
832	chr6	32395640	32395641	rs9268576	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p21.32	HLA-DRA	rs9268576-C	0.359	2E-8		0.111	[0.072-0.15] unit decrease	Affymetrix, Illumina [7374092] (imputed)	N
832	chr6	32395640	32395641	rs9268576	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on CD33+ HLA DR+ CD14dim	1,578 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9268576-C	0.46709	3E-10		0.262	[0.18-0.34] unit decrease	Illumina [16958370] (imputed)	N
832	chr6	32395640	32395641	rs9268576	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on CD33+ HLA DR+ CD14-	1,579 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9268576-C	0.46711	3E-20		0.3825	[0.3-0.46] unit decrease	Illumina [16961968] (imputed)	N
832	chr6	32395655	32395656	rs2105903	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in diabetes	70,762 European ancestry individuals, 20,967 African American individuals	NA	6p21.32	HLA-DRA	rs2105903-A	0.838	4E-12		0.821	[0.59-1.05] unit increase	Affymetrix [NR] (imputed)	N
832	chr6	32395725	32395726	rs3129843	26362759	Rothwell S	2015-09-11	Ann Rheum Dis	Dense genotyping of immune-related loci in idiopathic inflammatory myopathies confirms HLA alleles as the strongest genetic risk factor and suggests different genetic background for major clinical subgroups.	Idiopathic inflammatory myopathy	2,556 European ancestry cases, 15,651 European ancestry controls		6p21.32	HLA	rs3129843-G	0.11	9E-133		2.74	[2.53-2.97]	Illumina [90536]	N
832	chr6	32395725	32395726	rs3129843	26362759	Rothwell S	2015-09-11	Ann Rheum Dis	Dense genotyping of immune-related loci in idiopathic inflammatory myopathies confirms HLA alleles as the strongest genetic risk factor and suggests different genetic background for major clinical subgroups.	Dermatomyositis or juvenile dermatomyositis	879 European dermatomyositis cases, 15,651 European juvenile dermatomyositis ancestry controls		6p21.32	HLA	rs3129843-G		2E-48		2.18	[1.97-2.42]	Illumina [90536]	N
832	chr6	32396145	32396146	rs78566116	29782485	Rueger S	2018-05-21	PLoS Genet	Evaluation and application of summary statistic imputation to discover new height-associated loci.	Height	253,288 European ancestry individuals	336,474 European ancestry individuals	6p21.32	intergenic	rs78566116-T	0.0766992859032002	4E-12		0.011949114	unit decrease	NR [9276018] (imputed)	N
832	chr6	32397308	32397309	rs3129849	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PRTN3	5,367 Icelandic ancestry individuals	NA	6p21.32		rs3129849-A	0.2684	2E-16		0.176044	[0.13-0.22] unit increase	Illumina [7506463] (imputed)	N
832	chr6	32397783	32397784	rs3129852	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DRA	rs3129852-G	NR	3E-8		0.019398	[0.013-0.026] unit decrease	Affymetrix [319769] (imputed)	N
832	chr6	32397862	32397863	rs17202717	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs17202717-T	0.2	9E-9		4.33	[3.31-5.67]	Illumina [NR] (imputed)	N
832	chr6	32398647	32398648	rs3129853	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Prostate cancer	7,438 White British ancestry cases, 118,206 White British ancestry controls	NA	6p21.32		rs3129853-?	NR	2E-6		0.913903	[0.88-0.95]	NR [680312]	N
832	chr6	32399186	32399187	rs4321864	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DRA	rs4321864-A	NR	1E-10		0.019351	[0.013-0.025] unit increase	Affymetrix [319769] (imputed)	N
832	chr6	32399186	32399187	rs4321864	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DRA	rs4321864-A	NR	5E-10		0.0188026	[0.013-0.025] unit increase	Affymetrix [319769] (imputed)	N
832	chr6	32399186	32399187	rs4321864	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DRA	rs4321864-A	NR	2E-11		0.0204042	[0.014-0.026] unit increase	Affymetrix [321169] (imputed)	N
832	chr6	32399186	32399187	rs4321864	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on Hematopoietic Stem Cell	1,634 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs4321864-A	0.29062	4E-9		0.2523	[0.17-0.34] unit increase	Illumina [16999215] (imputed)	N
832	chr6	32399186	32399187	rs4321864	26450422	DeLorenze GN	2015-10-08	J Infect Dis	Polymorphisms in HLA Class II Genes Are Associated With Susceptibility to Staphylococcus aureus Infection in a White Population.	Staphylococcus aureus infection	4,701 European ancestry cases, 45,344 European ancestry controls	NA	6p21.32	HLA-DRA	rs4321864-A	NR	9E-8		1.13	[NR]	Affymetrix [at least 584535] (imputed)	N
832	chr6	32400938	32400939	rs3129859	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	6p21.32	NR	rs3129859-G	0.67	1E-12		1.06	[1.04-1.08]	Illumina [20370935] (imputed)	N
832	chr6	32400938	32400939	rs3129859	28130311	Tan W	2017-01-27	Gut	Genome-wide association study identifies HLA-DR variants conferring risk of HBV-related acute-on-chronic liver failure.	Acute-on-chronic liver failure in hepatitis B	389 Chinese ancestry cases, 391 Chinese ancestry controls	901 Chinese ancestry cases,  1,686 Chinese ancestry controls	6p21.32	HLA-DQB1, HLA-DRA	rs3129859-C	0.15	7E-19		1.83	[1.60-2.09]	Affymetrix [654960]	N
832	chr6	32401035	32401036	rs17496307	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs17496307-T	0.2	9E-9		4.33	[3.31-5.67]	Illumina [NR] (imputed)	N
832	chr6	32401078	32401079	rs3129860	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CFTR	5,361 Icelandic ancestry individuals	NA	6p21.32		rs3129860-A	0.2255	1E-13		0.165583	[0.12-0.21] unit increase	Illumina [7506463] (imputed)	N
832	chr6	32401078	32401079	rs3129860	23321320	Urabe Y	2013-01-12	J Hepatol	A genome-wide association study of HCV-induced liver cirrhosis in the Japanese population identifies novel susceptibility loci at the MHC region.	Hepatitis C induced liver cirrhosis	682 Japanese ancestry cases, 1,045 Japanese ancestry controls	936 Japanese ancestry cases, 3,809 Japanese ancestry controls	6p21.32	intergenic	rs3129860-A	0.231	1E-9		1.36	[1.22-1.49]	Illumina [431618]	N
832	chr6	32401216	32401217	rs3135338	20159113	Jakkula E	2010-02-12	Am J Hum Genet	Genome-wide association study in a high-risk isolate for multiple sclerosis reveals associated variants in STAT3 gene.	Multiple sclerosis	68 Finland founder cases, 136 Finland founder controls	83 Finland founder cases, 365 Finland founder controls 3,285 European ancestry cases, 6,379 European ancestry controls, 1,202 cases, 3,399 controls	6p21.32	HLA	rs3135338-A	0.13	2E-25		3.43	[NR]	Illumina [297343]	N
832	chr6	32401262	32401263	rs9268610	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on CD33dim HLA DR+ CD11b-	1,635 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9268610-C	0.23837	2E-14		0.3692	[0.28-0.46] unit decrease	Illumina [16999305] (imputed)	N
832	chr6	32402888	32402889	rs9268615	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DRA	rs9268615-A	NR	5E-9		0.0185721	[0.012-0.025] unit decrease	Affymetrix [323123] (imputed)	N
832	chr6	32403118	32403119	rs28732213	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs28732213-A	0.041	4E-80	(Ubiquitin carboxyl-terminal hydrolase 25, USP25.9215.117.3)	1.13	[1.01-1.25] unit increase	Affymetrix [10572788] (imputed)	N
832	chr6	32404376	32404377	rs3129868	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	6p21.32	NR	rs3129868-?	NR	6E-10		0.077	[0.052-0.101] unit increase	Illumina [at least 560000] (imputed)	N
832	chr6	32405864	32405865	rs9268628	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on HLA DR+ Natural Killer	2,971 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9268628-C	0.60641	2E-23		0.2999	[0.24-0.36] unit decrease	Illumina [17967059] (imputed)	N
832	chr6	32406341	32406342	rs3129871	23472185	Mero IL	2013-03-05	PLoS One	Oligoclonal band status in Scandinavian multiple sclerosis patients is associated with specific genetic risk alleles.	Multiple sclerosis (OCB status)	1,367 European ancestry OCB positive cases, 161 European ancestry OCB negative cases, 428 European ancestry controls	NA	6p21.32	HLA-DRA	rs3129871-?	NR	1E-16	(OCB positive vs. controls)	1.98	[1.68-2.32]	Illumina [495970]	N
832	chr6	32406341	32406342	rs3129871	23472185	Mero IL	2013-03-05	PLoS One	Oligoclonal band status in Scandinavian multiple sclerosis patients is associated with specific genetic risk alleles.	Multiple sclerosis (OCB status)	1,367 European ancestry OCB positive cases, 161 European ancestry OCB negative cases	3,029 European ancestry OCB positive cases, 374 European ancestry OCB negative cases	6p21.32	HLA-DRA	rs3129871-?	NR	6E-15		1.72	[1.59-1.86]	Illumina [495970]	N
832	chr6	32406472	32406473	rs9268633	33143745	Andlauer TFM	2020-11-04	BMC Med	Treatment- and population-specific genetic risk factors for anti-drug antibodies against interferon-beta: a GWAS.	Neutralising antibody response to interferon beta therapy in multiple sclerosis (antibody titre; IFN?-1a subcutaneous and intramuscular)	up to 2,000 German and Swedish ancestry individuals	up to 757 German and Swedish ancestry individuals	6p21.32		rs9268633-A	0.39	1E-17		0.2	[-0.0392-0.0392] unit increase	Illumina [8550834] (imputed)	N
832	chr6	32407301	32407302	rs2395179	29534301	Nishida N	2018-03-13	Hepatology	Key HLA-DRB1-DQB1 haplotypes and role of the BTNL2 gene for response to a hepatitis B vaccine.	Response to hepatitis B vaccine	107 Japanese ancestry low responder individuals, 351 Japanese ancestry intermediate responder individuals, 735 Japanese ancestry high responder individuals	NA	6p21.32	HLA-DRA	rs2395179-?		5E-14		0.221	unit decrease	Affymetrix [427664]	N
832	chr6	32408043	32408044	rs9268644	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DRA	rs9268644-A	NR	4E-13		0.022277	[0.016-0.028] unit increase	Affymetrix [323123] (imputed)	N
832	chr6	32408043	32408044	rs9268644	28425483	Qiu F	2017-04-20	Nat Commun	A genome-wide association study identifies six novel risk loci for primary biliary cholangitis.	Primary biliary cholangitis	1,122 Han Chinese ancestry cases, 4,036 Han Chinese ancestry controls	907 Han Chinese ancestry cases, 2,127 Han Chinese ancestry controls	6p21.32	HLA-DRA	rs9268644-?	0.823	8E-31		1.9607843	[1.75-2.22]	Illumina [776516]	N
832	chr6	32408496	32408497	rs3135394	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p21.32	HLA-DRA	rs3135394-G	0.344	3E-33				Illumina [118177]	N
832	chr6	32408496	32408497	rs3135394	24097067	Lessard CJ	2013-11-01	Nat Genet	Variants at multiple loci implicated in both innate and adaptive immune responses are associated with Sjogren's syndrome.	Sjogren's syndrome	395 European ancestry cases, 1,975 European ancestry controls	1,243 European ancestry cases, 4,779 European ancestry controls	6p21.32	HLA-DRA	rs3135394-G	0.11	5E-113		3.52	[3.02-4.10]	Illumina [648937]	N
832	chr6	32408496	32408497	rs3135394	19838195	Gateva V	2009-11-01	Nat Genet	A large-scale replication study identifies TNIP1, PRDM1, JAZF1, UHRF1BP1 and IL10 as risk loci for systemic lupus erythematosus.	Systemic lupus erythematosus	1,310 European ancestry cases, 7,859 European ancestry controls	1,963 European ancestry cases, 4,329 European ancestry controls	6p21.32	HLA-DRB1	rs3135394-G	0.1	2E-60		1.98	[1.84-2.14]	Illumina [~ 2100000] (imputed)	N
832	chr6	32408526	32408527	rs9268645	19430480	Barrett JC	2009-05-10	Nat Genet	Genome-wide association study and meta-analysis find that over 40 loci affect risk of type 1 diabetes.	Type 1 diabetes	7,514 European ancestry cases, 9,045 European ancestry controls	4,267 European ancestry cases, 4,670 European ancestry controls, 4,342 European ancestry trios from 2,319 families	6p21.32	MHC	rs9268645-?	NR	1E-100				Affymetrix, Illumina [841622] (imputed)	N
832	chr6	32408906	32408907	rs3129879	34212547	An J	2021-07-01	Allergy Asthma Immunol Res	Genome-Wide Association Study of Korean Asthmatics: A Comparison With UK Asthmatics.	Adult asthma	1,386 Korean ancestry cases, 5,205 Korean ancestry controls	NA	6p21.32		rs3129879-A	0.34	3E-6		0.78	[0.71-0.87]	Affymetrix [4922160] (imputed)	N
832	chr6	32409055	32409056	rs9268652	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Hepatitis B	1,425 European ancestry cases, 218,180 European ancestry controls	NA	6p21.32	HLA-DRA	rs9268652-G	0.74	3E-9		1.32	[1.25-1.38]	Illumina [at least 560000] (imputed)	N
832	chr6	32409529	32409530	rs3129882	24511991	Hill-Burns EM	2014-02-10	BMC Genomics	Identification of a novel Parkinson's disease locus via stratified genome-wide association study.	Parkinson's disease	1,565 European ancestry sproadic Parkinson's disease cases, 435 European ancestry familial Parkinson's disease cases, 1,986 European ancestry controls	1,528 European ancestry sporadic Parkinson's disease cases, 707 European ancestry familial Parkinson's disease cases, 796 European ancestry controls	6p21.32	HLA	rs3129882-G	0.395	5E-10	(Sporadic)	1.38	[1.24-1.52]	Illumina [811597]	N
832	chr6	32409529	32409530	rs3129882	24511991	Hill-Burns EM	2014-02-10	BMC Genomics	Identification of a novel Parkinson's disease locus via stratified genome-wide association study.	Parkinson's disease	1,565 European ancestry sproadic Parkinson's disease cases, 435 European ancestry familial Parkinson's disease cases, 1,986 European ancestry controls	1,528 European ancestry sporadic Parkinson's disease cases, 707 European ancestry familial Parkinson's disease cases, 796 European ancestry controls	6p21.32	HLA	rs3129882-G	0.395	3E-8		1.31	[1.19-1.43]	Illumina [811597]	N
832	chr6	32409529	32409530	rs3129882	21779181	Gorlova O	2011-07-14	PLoS Genet	Identification of novel genetic markers associated with clinical phenotypes of systemic sclerosis through a genome-wide association strategy.	Systemic sclerosis	2,296 European ancestry cases, 5,172 European ancestry controls	3,175 European ancestry cases, 4,210 European ancestry controls	6p21.32	HLA-DRA	rs3129882-?	0.44	2E-27	(ATA positive)	2.17	[1.88-2.50]	Illumina [NR] (imputed)	N
832	chr6	32409529	32409530	rs3129882	20711177	Hamza TH	2010-08-15	Nat Genet	Common genetic variation in the HLA region is associated with late-onset sporadic Parkinson's disease.	Parkinson's disease	2,000 European ancestry cases, 1,986 European ancestry controls	Up to 1,447 cases, 1,468 controls	6p21.32	HLA-DRA	rs3129882-G	0.40	2E-10		1.26	[1.17-1.35]	Illumina [811597]	N
832	chr6	32409707	32409708	rs17496549	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs17496549-T	0.2	9E-9		4.33	[3.31-5.67]	Illumina [NR] (imputed)	N
832	chr6	32410575	32410576	rs3129886	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Matrix metalloproteinase-10 levels	21,758 European ancestry individuals	9,173 individuals	6p21.32		rs3129886-T	0.25	6E-7		0.0572	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
832	chr6	32410690	32410691	rs3129887	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DRA	rs3129887-A	NR	4E-11		0.0236955	[0.017-0.031] unit decrease	Affymetrix [319769] (imputed)	N
832	chr6	32410690	32410691	rs3129887	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DRA	rs3129887-A	NR	2E-10		0.0226864	[0.016-0.03] unit decrease	Affymetrix [319769] (imputed)	N
832	chr6	32410690	32410691	rs3129887	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DRA	rs3129887-A	NR	2E-12		0.0256	[0.019-0.033] unit decrease	Affymetrix [321169] (imputed)	N
832	chr6	32410690	32410691	rs3129887	28062665	Kawashima M	2017-01-05	Hum Mol Genet	Genome-wide association studies identify PRKCB as a novel genetic susceptibility locus for primary biliary cholangitis in the Japanese population.	Primary biliary cholangitis	1,381 Japanese ancestry cases, 1,505 Japanese ancestry controls	512 Japanese ancestry cases, 6,512 Japanese ancestry controls	6p21.32	HLA-DRA, HLA-DRB1	rs3129887-?	NR	2E-29		3.13	[2.54-3.85]	Affymetrix [425290]	N
832	chr6	32410940	32410941	rs9268659	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	HLA-DRA	rs9268659-T	NR	2E-9		0.0171616	[0.012-0.023] unit decrease	Affymetrix [321114] (imputed)	N
832	chr6	32410940	32410941	rs9268659	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Perceived unattractiveness to mosquitoes	16,576 European ancestry individuals	NA	6p21.32	HLA-DRA	rs9268659-T	0.42	2E-9		0.139734	[0.094-0.186] unit increase	Illumina [7433384] (imputed)	N
832	chr6	32411034	32411035	rs8084	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DRA	rs8084-A	NR	3E-21		0.027016	[0.021-0.033] unit decrease	Affymetrix [321169] (imputed)	N
832	chr6	32411375	32411376	rs2239805	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.32	HLA-DRA, HLA-DRB9	rs2239805-G	0.169007	1E-12	(EA, Complement C4)	0.4079	[0.3-0.52] unit decrease	Affymetrix [509946]	N
832	chr6	32411645	32411646	rs7192	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs7192-T	0.49	3E-9		0.15	[0.11-0.22]	Illumina [NR] (imputed)	N
832	chr6	32411645	32411646	rs7192	22541561	Zhao H	2012-04-26	Am J Hum Genet	A genome-wide association study reveals that variants within the HLA region are associated with risk for nonobstructive azoospermia.	Non-obstructive azoospermia	802 Han Chinese ancestry cases, 1,863 Han Chinese ancestry controls	1,424 Han Chinese ancestry cases, 2,713 Han Chinese ancestry controls	6p21.32	HLA-DRA	rs7192-T	0.26	3E-6		1.29	[NR]	Affymetrix, Illumina [912924]	N
832	chr6	32411845	32411846	rs2239802	28008999	Ostrowski J	2016-12-23	Sci Rep	Genetic architecture differences between pediatric and adult-onset inflammatory bowel diseases in the Polish population.	Ulcerative colitis	269 Polish ancestry child cases, 259 Polish ancestry adult cases, 582 Polish ancestry controls	121 Polish ancestry child cases, 85 Polish ancestry adult cases, 352 Polish ancestry controls	6p21.32	HLA-DRA	rs2239802-?		2E-7	(Adults)	1.7715251	[1.43-2.19]	Illumina [2612357]	N
832	chr6	32412387	32412388	rs4935356	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	6p21.32	HLA-DRA	rs4935356-T	0.756088	8E-22		0.0245501	[0.02-0.03] unit decrease	Affymetrix [NR] (imputed)	N
832	chr6	32412394	32412395	rs3135390	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DRA	rs3135390-C	NR	6E-9		0.0224213	[0.015-0.03] unit increase	Affymetrix [323123] (imputed)	N
832	chr6	32412434	32412435	rs3177928	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs3177928-A	0.21	2E-8		4.13	[3.16-5.38]	Illumina [NR] (imputed)	N
832	chr6	32412434	32412435	rs3177928	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.32	NR	rs3177928-G	NR	1E-9		0.033	unit decrease	Affymetrix [at least 7091467] (imputed)	N
832	chr6	32412434	32412435	rs3177928	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.32	NR	rs3177928-G	0.856	5E-7	(EA)	0.03	unit decrease	Affymetrix [at least 7091467] (imputed)	N
832	chr6	32412434	32412435	rs3177928	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.32	NR	rs3177928-G	NR	1E-15		0.049	unit decrease	Affymetrix [at least 7091467] (imputed)	N
832	chr6	32412434	32412435	rs3177928	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.32	NR	rs3177928-G	0.856	5E-12	(EA)	0.045	unit decrease	Affymetrix [at least 7091467] (imputed)	N
832	chr6	32412434	32412435	rs3177928	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.32	NR	rs3177928-G	NR	9E-10		0.038	unit decrease	Affymetrix [at least 7091467] (imputed)	N
832	chr6	32412434	32412435	rs3177928	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.32	NR	rs3177928-G	0.856	2E-7	(EA)	0.035	unit decrease	Affymetrix [at least 7091467] (imputed)	N
832	chr6	32412434	32412435	rs3177928	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Total cholesterol levels	32,576 East Asian ancestry individuals, 187,365 European ancestry individuals	10,855 Chinese ancestry individuals	6p21.32	HLA	rs3177928-A	0.181	5E-22	(Trans-ethnic initial)	0.0482	[0.038-0.058] unit increase (EA Beta values)	Affymetrix, Illumina [up to 1900000] (imputed)	N
832	chr6	32412434	32412435	rs3177928	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	LDL cholesterol levels	32,285 East Asian ancestry individuals, 173,082 European ancestry individuals	8,478 Chinese ancestry individuals	6p21.32	HLA	rs3177928-A	0.181	5E-17	(Trans-ethnic initial)	0.0452	[0.035-0.055] unit increase (EA Beta value)	Affymetrix, Illumina [~ 1900000] (imputed)	N
832	chr6	32412434	32412435	rs3177928	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	6p21.32	HLA	rs3177928-A	0.17	3E-17		0.045	[NR] unit increase	NR [NR] (imputed)	N
832	chr6	32412434	32412435	rs3177928	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	6p21.32	HLA	rs3177928-A	0.17	1E-21		0.048	[NR] unit increase	NR [NR] (imputed)	N
832	chr6	32412434	32412435	rs3177928	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	LDL cholesterol	95,454 European ancestry individuals	NA	6p21.32	HLA	rs3177928-A	0.16	2E-15		1.83	[1.36-2.3] mg/dL increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
832	chr6	32412434	32412435	rs3177928	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	Cholesterol, total	100,184 European ancestry individuals	NA	6p21.32	HLA	rs3177928-A	0.16	4E-19		2.31	[1.78-2.84] mg/dL increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
832	chr6	32412479	32412480	rs7194	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.32	HLA-DRA	rs7194-A	0.5927	6E-9		0.0221	[0.015-0.03] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
832	chr6	32412479	32412480	rs7194	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6p21.32	BTNL2	rs7194-A	0.5927	5E-8		0.0247	[0.016-0.034] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
832	chr6	32412479	32412480	rs7194	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.32	HLA-DRA	rs7194-?	0.5927	1E-7				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
832	chr6	32412538	32412539	rs7195	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs7195-A	0.49	3E-9		0.15	[0.11-0.22]	Illumina [NR] (imputed)	N
832	chr6	32412591	32412592	rs1051336	29857070	Gao J	2018-05-29	J Invest Dermatol	Association study and fine-mapping major histocompatibility complex analysis of pemphigus vulgaris in a Han Chinese population.	Pemphigus vulgaris	240 Han Chinese ancestry cases, 1,031 Han Chinese ancestry controls	252 Han Chinese ancestry cases, 1,852 Han Chinese ancestry controls	6p21.32	NR	rs1051336-?	NR	3E-6	(conditioned on HLA-DRB1*14:04 and rs7454108)	3.03	[NR]	Illumina [802980]	N
832	chr6	32413050	32413051	rs3135388	19525953	De Jager PL	2009-06-14	Nat Genet	Meta-analysis of genome scans and replication identify CD6, IRF8 and TNFRSF1A as new multiple sclerosis susceptibility loci.	Multiple sclerosis	2,624 European ancestry cases, 7,220 European ancestry controls	2,215 European ancestry cases, 2,116 European ancestry controls		HLA-DRB1	rs3135388-A	0.22	4E-225		2.75	[2.46-3.07]	Affymetrix, Illumina [~ 2560000] (imputed)	N
832	chr6	32413050	32413051	rs3135388	17660530	Hafler DA	2007-07-29	N Engl J Med	Risk alleles for multiple sclerosis identified by a genomewide study.	Multiple sclerosis	931 European ancestry trios, 2,431 European ancestry controls	609 European ancestry trios, 2,322 European ancestry cases, 2,987 European ancestry controls		HLA-DRA	rs3135388-A	0.23	9E-81		1.99	[1.84-2.15]	Affymetrix [334923]	N
832	chr6	32413093	32413094	rs2213586	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs2213586-A	0.49	3E-9		0.15	[0.11-0.22]	Illumina [NR] (imputed)	N
832	chr6	32413149	32413150	rs2213585	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs2213585-G	0.48	3E-9		0.15	[0.11-0.22]	Illumina [NR] (imputed)	N
832	chr6	32413458	32413459	rs2227139	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs2227139-G	0.49	3E-9		0.15	[0.11-0.22]	Illumina [NR] (imputed)	N
832	chr6	32413458	32413459	rs2227139	19820697	Soranzo N	2009-10-11	Nat Genet	A genome-wide meta-analysis identifies 22 loci associated with eight hematological parameters in the HaemGen consortium.	Hematological parameters	4,627 European ancestry individuals	9,316 European ancestry individuals	6p21.32	intergenic	rs2227139-G	NR	1E-7	(WBC)	0.02	[0.01-0.03] 10^9/l increase	Affymetrix, Illumina [~ 2110000] (imputed)	N
832	chr6	32413544	32413545	rs3129889	22190364	Patsopoulos NA	2011-12-01	Ann Neurol	Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.	Multiple sclerosis	5,545 European ancestry cases, 12,153 European ancestry controls	NA	6p21.32	HLA-DRB1	rs3129889-G	0.20	1E-206		2.97	[NR]	Affymetrix, Illumina [2529394]	N
832	chr6	32413556	32413557	rs3763326	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (mother's age at death or mother's attained age)	up to 699,000 individuals	NA	6p21.32	NR	rs3763326-A		5E-6				Illumina [458525]	N
832	chr6	32413829	32413830	rs3763327	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs3763327-G	0.49	3E-9		0.15	[0.11-0.22]	Illumina [NR] (imputed)	N
832	chr6	32414272	32414273	rs3129890	26272072	Jiang X	2015-08-13	Rheumatology (Oxford)	An Immunochip-based interaction study of contrasting interaction effects with smoking in ACPA-positive versus ACPA-negative rheumatoid arthritis.	ACPA-positive rheumatoid arthritis (smoking interaction)	340 European ancestry never-smoker cases, 493 European ancestry ever-smoker cases, 746 European ancestry never-smoker controls, 994 European ancestry ever-smoker controls	187 European ancestry never-smoker cases, 421 European ancestry ever-smoker cases, 461 European ancestry never-smoker controls, 447 European ancestry ever-smoker controls	6p21.32	NR	rs3129890-?	NR	1E-10	(adjusted for HLA shared epitope)	2.5	[1.89-3.57]	Illumina [133648] (imputed)	N
832	chr6	32414272	32414273	rs3129890	21804548	Hirota T	2011-07-31	Nat Genet	Genome-wide association study identifies three new susceptibility loci for adult asthma in the Japanese population.	Asthma	1,532 Japanese ancestry cases, 3,304 Japanese ancestry controls	5,639 Japanese ancestry cases, 24,608 Japanese ancestry controls	6p21.32	HLA-DRA	rs3129890-T	0.61	5E-13		1.15	[1.11-1.20]	Illumina [458847]	N
832	chr6	32414286	32414287	rs9268670	33768542	Liu Y	2021-03-26	Clin Pharmacol Ther	Class II HLA Variants Associate with Risk of Pegaspargase Hypersensitivity.	Asparaginase hypersensitivity in acute lymphoblastic leukemia	310 African ancestry individuals, 798 Native American individuals, 387 individuals	NA	6p21.32	NR	rs9268670-T	NR	7E-7		0.56	[NR]	Illumina [NR] (imputed)	N
832	chr6	32414286	32414287	rs9268670	33768542	Liu Y	2021-03-26	Clin Pharmacol Ther	Class II HLA Variants Associate with Risk of Pegaspargase Hypersensitivity.	Asparaginase hypersensitivity in acute lymphoblastic leukemia	310 African ancestry individuals, 798 Native American individuals, 112 Asian ancestry individuals, 387 individuals	NA	6p21.32	HLA-DRA	rs9268670-T	NR	2E-7		0.55		Illumina [NR] (imputed)	N
832	chr6	32414289	32414290	rs9268671	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs9268671-A	0.339438	4E-8		0.023014	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
832	chr6	32414289	32414290	rs9268671	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DRA	rs9268671-A	NR	4E-19		0.0265032	[0.021-0.032] unit decrease	Affymetrix [319769] (imputed)	N
832	chr6	32414289	32414290	rs9268671	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DRA	rs9268671-A	NR	1E-12		0.0233694	[0.017-0.03] unit decrease	Affymetrix [323858] (imputed)	N
832	chr6	32414289	32414290	rs9268671	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DRA	rs9268671-A	NR	5E-18		0.0256545	[0.02-0.031] unit decrease	Affymetrix [319769] (imputed)	N
832	chr6	32414289	32414290	rs9268671	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	HLA-DRA	rs9268671-A	NR	4E-11		0.0217286	[0.015-0.028] unit decrease	Affymetrix [127266] (imputed)	N
832	chr6	32414289	32414290	rs9268671	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DRA	rs9268671-A	NR	2E-11		0.0199636	[0.014-0.026] unit increase	Affymetrix [321016] (imputed)	N
832	chr6	32414289	32414290	rs9268671	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DRA	rs9268671-A	NR	3E-22		0.0312717	[0.025-0.038] unit increase	Affymetrix [323123] (imputed)	N
832	chr6	32414289	32414290	rs9268671	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	6p21.32	HLA-DRA	rs9268671-G	0.661005	1E-11		0.018096138	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
832	chr6	32414667	32414668	rs9268677	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DRA	rs9268677-A	NR	4E-15		0.0222453	[0.017-0.028] unit increase	Affymetrix [319769] (imputed)	N
832	chr6	32414667	32414668	rs9268677	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DRA	rs9268677-A	NR	1E-14		0.0218771	[0.016-0.027] unit increase	Affymetrix [319769] (imputed)	N
832	chr6	32415079	32415080	rs3129891	26272072	Jiang X	2015-08-13	Rheumatology (Oxford)	An Immunochip-based interaction study of contrasting interaction effects with smoking in ACPA-positive versus ACPA-negative rheumatoid arthritis.	ACPA-positive rheumatoid arthritis (smoking interaction)	340 European ancestry never-smoker cases, 493 European ancestry ever-smoker cases, 746 European ancestry never-smoker controls, 994 European ancestry ever-smoker controls	187 European ancestry never-smoker cases, 421 European ancestry ever-smoker cases, 461 European ancestry never-smoker controls, 447 European ancestry ever-smoker controls	6p21.32	NR	rs3129891-?	NR	2E-9	(adjusted for HLA shared epitope)	2.5	[1.89-3.7]	Illumina [133648] (imputed)	N
832	chr6	32415152	32415153	rs9469112	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	6p21.32	HLA-DRA	rs9469112-T	0.1734	1E-10		6.4424515	NR z-unit increase	Affymetrix, Illumina [up to 10847151] (imputed)	N
832	chr6	32415210	32415211	rs28895028	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs28895028-A	0.21	2E-8		4.13	[3.16-5.38]	Illumina [NR] (imputed)	N
832	chr6	32415857	32415858	rs12529093	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs12529093-G	0.21	2E-8		4.13	[3.16-5.38]	Illumina [NR] (imputed)	N
832	chr6	32415974	32415975	rs13209234	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs13209234-A	0.21	2E-8		4.13	[3.16-5.38]	Illumina [NR] (imputed)	N
832	chr6	32416077	32416078	rs13209059	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs13209059-G	0.21	2E-8		4.13	[3.16-5.38]	Illumina [NR] (imputed)	N
832	chr6	32417243	32417244	rs28895057	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs28895057-G	0.098	1E-15	(Ubiquitin carboxyl-terminal hydrolase 25, USP25.9215.117.3)	0.39	[0.29-0.49] unit increase	Affymetrix [10572788] (imputed)	N
832	chr6	32417793	32417794	rs6937167	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.32	NR	rs6937167-AT	0.01	3E-9	(women)	1.02959	[0.7-1.36] unit increase	Affymetrix [up to 8900000] (imputed)	N
832	chr6	32418030	32418031	rs6937545	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DRA	rs6937545-A	NR	3E-16		0.0268745	[0.02-0.033] unit decrease	Affymetrix [323858] (imputed)	N
832	chr6	32418030	32418031	rs6937545	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	HLA-DRA	rs6937545-A	NR	4E-14		0.0248417	[0.018-0.031] unit decrease	Affymetrix [127266] (imputed)	N
832	chr6	32419275	32419275	rs202087577	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	6p21.32	Intergenic	rs202087577-?	NR	3E-21		0.0536425	[0.043-0.065] unit increase	Illumina [13520550] (imputed)	N
832	chr6	32419463	32419464	rs28895103	33649182	Penova M	2021-03-01	Proc Natl Acad Sci U S A	Genome wide association study of HTLV-1-associated myelopathy/tropical spastic paraparesis in the Japanese population.	HTLV-1 associated myelopathy	731 Japanese ancestry cases, 846 Japanese ancestry controls	NA	6p21.32		rs28895103-G	0.95	1E-8		0.44	[0.33-0.58]	Illumina [126394]	N
832	chr6	32419958	32419959	rs3135384	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	Systemic lupus erythematosus	1,639 East Asian ancestry cases, 2,410 East Asian ancestry controls	NA			rs3135384-G	NR	7E-26		0.5329	[0.43-0.63] unit decrease	Illumina [NR] (imputed)	N
832	chr6	32420178	32420179	rs7754768	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs7754768-C	0.49	7E-10		0.14	[0.10-0.20]	Illumina [NR] (imputed)	N
832	chr6	32420198	32420199	rs9268775	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	6p21.32	HLA-DRA	rs9268775-T	0.0541	3E-6		0.0884	[0.052-0.125] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
832	chr6	32420496	32420497	rs9268781	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DRB9	rs9268781-T	NR	5E-17		0.0247953	[0.019-0.031] unit increase	Affymetrix [321016] (imputed)	N
832	chr6	32420854	32420855	rs9268786	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	6p21.32		rs9268786-C	NR	3E-28		0.0241	[0.02-0.028] unit increase	Affymetrix, Illumina [20529698] (imputed)	N
832	chr6	32420942	32420943	rs111255178	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.32	HLA-DRB9	rs111255178-T	0.1435	3E-6		0.0558	[0.032-0.079] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
832	chr6	32421072	32421073	rs9268791	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD25 on CD28+ CD4+ T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9268791-C	0.74777	1E-10		0.2077	[0.14-0.27] unit decrease	Illumina [17954496] (imputed)	N
832	chr6	32421468	32421469	rs3129897	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	HLA-DRB9	rs3129897-A	0.156	2E-29	(Interleukin-21, IL21.7124.18.3)	0.37	[0.31-0.43] unit decrease	Affymetrix [10572788] (imputed)	N
832	chr6	32421503	32421504	rs28895136	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs28895136-C	0.21	2E-8		4.13	[3.16-5.38]	Illumina [NR] (imputed)	N
832	chr6	32422190	32422191	rs2097442	34642315	Ferreiro-Iglesias A	2021-10-12	Nat Commun	Germline determinants of humoral immune response to HPV-16 protect against oropharyngeal cancer.	Oropharynx cancer and human papilloma virus 16 negative oropharyngeal cancer	2,359 European ancestry cases, 565 European ancestry controls	NA	6p21.32		rs2097442-A	NR	1E-6		1.2355		Illumina [up to 7574753] (imputed)	N
832	chr6	32422190	32422191	rs2097442	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Non-Hodgkin's lymphoma	2,400 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs2097442-A	NR	3E-19		1.3187393	NR	Affymetrix [7846216] (imputed)	N
832	chr6	32423515	32423516	rs140302846	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	6p21.32	NR	rs140302846-?	NR	1E-15				Affymetrix [~ 8270000] (imputed)	N
832	chr6	32423515	32423516	rs140302846	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs140302846-?	NR	7E-13				Affymetrix [~ 8270000] (imputed)	N
832	chr6	32423914	32423915	rs9268807	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	HLA	rs9268807-C	0.208	5E-117		1.604	[1.56-1.65]	Illumina [11270530] (imputed)	N
832	chr6	32424030	32424031	rs13220657	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs13220657-T	0.21	2E-8		4.13	[3.16-5.38]	Illumina [NR] (imputed)	N
832	chr6	32424369	32424370	rs9268811	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DRB9	rs9268811-T	NR	1E-14		0.0222291	[0.017-0.028] unit increase	Affymetrix [321169] (imputed)	N
832	chr6	32424593	32424594	rs9268813	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	6p21.32	NR	rs9268813-?	NR	8E-14				Affymetrix [~ 8270000] (imputed)	N
832	chr6	32424593	32424594	rs9268813	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.32	NR	rs9268813-?	NR	8E-15				Affymetrix [~ 8270000] (imputed)	N
832	chr6	32424593	32424594	rs9268813	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs9268813-?	NR	1E-17				Affymetrix [~ 8270000] (imputed)	N
832	chr6	32424881	32424882	rs7763262	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	6p21.32	HLA-DQB1, HLA-DQA1, HLA-DRB1	rs7763262-C	0.72	1E-10	(East Asian)	1.3	[NR]	Illumina [> 1000000] (imputed)	N
832	chr6	32424881	32424882	rs7763262	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	6p21.32	HLA-DQB1, HLA-DQA1, HLA-DRB1	rs7763262-C	0.69	2E-38		1.41	[NR]	Illumina [> 1000000] (imputed)	N
832	chr6	32424881	32424882	rs7763262	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	6p21.32	HLA-DQB1, HLA-DQA1, HLA-DRB1	rs7763262-C	0.69	1E-30	(EA)	1.49	[NR]	Illumina [> 1000000] (imputed)	N
832	chr6	32425303	32425304	rs28895205	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs28895205-G	0.21	2E-8		4.13	[3.16-5.38]	Illumina [NR] (imputed)	N
832	chr6	32425486	32425487	rs7744304	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DRB9	rs7744304-G	NR	9E-27		0.0345924	[0.028-0.041] unit increase	Affymetrix [323123] (imputed)	N
832	chr6	32425761	32425762	rs41291794	27927641	Ombrello MJ	2016-12-07	Ann Rheum Dis	Genetic architecture distinguishes systemic juvenile idiopathic arthritis from other forms of juvenile idiopathic arthritis: clinical and therapeutic implications.	Systemic juvenile idiopathic arthritis	178 European ancestry cases, 434 European ancestry controls, 81 Hispanic/Latin American cases, 177 Hispanic/Latin American controls, 511 cases, 6,336 controls	NA	6p21.32	HLA-DRA	rs41291794-?		4E-15	(Additive)	2.1	[1.80-2.60]	Illumina [5600610] (imputed)	N
832	chr6	32425982	32425983	rs6457592	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DRB9	rs6457592-C	NR	2E-10		0.0179035	[0.012-0.023] unit decrease	Affymetrix [321016] (imputed)	N
832	chr6	32427004	32427005	rs113164910	27668658	Iotchkova V	2016-11-01	Nat Genet	Discovery and refinement of genetic loci associated with cardiometabolic risk using dense imputation maps.	Cardiometabolic and hematological traits	up to 35,981 European ancestry individuals	up to 102,505 European ancestry individuals	6p21.32	HLA-DRA	rs113164910-AAC		4E-54	(WBC)	0.008	[0.008-0.008] unit increase	Affymetrix, Illumina [17000000] (imputed)	N
832	chr6	32427005	32427005	rs5875374	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	6p21.32	HLA-DRB9	rs5875374-AAC	0.6671	2E-39		0.04909979	[0.042-0.056] unit increase	Affymetrix [~ 2500000] (imputed)	N
832	chr6	32427098	32427099	rs1547422	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD45 on CD4+ T cell	3,113 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs1547422-G	0.77074	1E-9		0.204	[0.14-0.27] unit decrease	Illumina [18030777] (imputed)	N
832	chr6	32427178	32427179	rs1548306	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycoprotein acetyls levels	115,082 European ancestry individuals	NA	6p21.32		rs1548306-A	0.337505	3E-30		0.0494261	[0.041-0.058] unit decrease	NR [11722792] (imputed)	N
832	chr6	32427178	32427179	rs1548306	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA	6p21.32	NR	rs1548306-?	NR	9E-7		0.0374	[0.023-0.052] unit increase	Illumina [at least 560000] (imputed)	N
832	chr6	32427178	32427179	rs1548306	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	6p21.32	Intergenic	rs1548306-T	NR	6E-10		0.0234279	[0.016-0.031] unit decrease	Illumina [13519193] (imputed)	N
832	chr6	32427178	32427179	rs1548306	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.32	Intergenic	rs1548306-T	NR	1E-11	(women)	0.0332253	[0.024-0.043] unit decrease	Illumina [13520550] (imputed)	N
832	chr6	32427178	32427179	rs1548306	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.32	HLA-DRA, HLA-DRB5	rs1548306-T	0.634	9E-14		0.0256004	[0.019-0.032] unit decrease	Illumina [13520550] (imputed)	N
832	chr6	32427178	32427179	rs1548306	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	6p21.32	HLA-DRA, HLA-DRB5	rs1548306-T	0.634	5E-29		0.0446701	[0.037-0.052] unit decrease	Illumina [13520550] (imputed)	N
832	chr6	32427380	32427381	rs28732229	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs28732229-T	0.21	2E-8		4.13	[3.16-5.38]	Illumina [NR] (imputed)	N
832	chr6	32427747	32427748	rs9268831	33558538	Gebresilase T	2021-02-08	Sci Rep	Replication of HLA class II locus association with susceptibility to podoconiosis in three Ethiopian ethnic groups.	Podoconiosis	1,137 Ethiopian ancestry cases, 1,152 Ethiopian ancestry controls	NA	6p21.32	HLA-DRB9	rs9268831-T	0.46	2E-9				Illumina [2201695]	N
832	chr6	32427747	32427748	rs9268831	29534301	Nishida N	2018-03-13	Hepatology	Key HLA-DRB1-DQB1 haplotypes and role of the BTNL2 gene for response to a hepatitis B vaccine.	Response to hepatitis B vaccine	107 Japanese ancestry low responder individuals, 351 Japanese ancestry intermediate responder individuals, 735 Japanese ancestry high responder individuals	NA	6p21.32	HLA-DRAB5	rs9268831-?		1E-13		0.192	unit decrease	Affymetrix [427664]	N
832	chr6	32427788	32427789	rs9268832	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs9268832-T	0.49	7E-10		0.14	[0.10-0.20]	Illumina [NR] (imputed)	N
832	chr6	32428114	32428115	rs9268835	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DRB9	rs9268835-A	NR	4E-20		0.0276383	[0.022-0.034] unit increase	Affymetrix [319769] (imputed)	N
832	chr6	32428114	32428115	rs9268835	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DRB9	rs9268835-A	NR	4E-20		0.0276817	[0.022-0.034] unit increase	Affymetrix [319769] (imputed)	N
832	chr6	32428114	32428115	rs9268835	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	HLA-DRB9	rs9268835-A	NR	7E-13		0.0218474	[0.016-0.028] unit increase	Affymetrix [321114] (imputed)	N
832	chr6	32428284	32428285	rs6903608	24920014	Cozen W	2014-06-12	Nat Commun	A meta-analysis of Hodgkin lymphoma reveals 19p13.3 TCF3 as a novel susceptibility locus.	Hodgkin's lymphoma	1,816 European ancestry cases, 7,877 European ancestry controls	1,281 European ancestry cases, 3,218 European ancestry controls	6p21.32	HLA class II, HLA class I	rs6903608-C	0.30	7E-31		1.64	[1.51-1.78]	Affymetrix, Illumina [1004829] (imputed)	N
832	chr6	32428284	32428285	rs6903608	24149102	Frampton M	2013-10-22	Nat Commun	Variation at 3p24.1 and 6q23.3 influences the risk of Hodgkin's lymphoma.	Hodgkin's lymphoma	1,465 European ancestry cases, 6,417 European ancestry controls	1,071 European ancestry cases, 953 cases, 1,853 controls	6p21.32	NR	rs6903608-G	0.27	5E-27		1.62	[NR]	Illumina [296129]	N
832	chr6	32428284	32428285	rs6903608	21037568	Enciso-Mora V	2010-10-31	Nat Genet	A genome-wide association study of Hodgkin's lymphoma identifies new susceptibility loci at 2p16.1 (REL), 8q24.21 and 10p14 (GATA3).	Hodgkin's lymphoma	589 European ancestry cases, 5,199 European ancestry controls	2,057 European ancestry cases, 3,416 European ancestry controls	6p21.32	HLA-DRA	rs6903608-G	0.27	3E-50		1.7	[1.58-1.82]	Illumina [504374]	N
832	chr6	32428771	32428772	rs9268839	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	6p21.32	HLA-DRB1	rs9268839-A	NR	1E-100		0.737171	[0.52-0.95] unit decrease	Illumina [8380626] (imputed)	N
832	chr6	32428771	32428772	rs9268839	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	6p21.32	HLA-DRB1	rs9268839-A	0.750718391	3E-7	(AA)	0.623752	[0.39-0.86] unit decrease	Illumina [8380626] (imputed)	N
832	chr6	32428771	32428772	rs9268839	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	6p21.32	HLA-DRB1	rs9268839-A	0.56	4E-134	(East Asian)	0.64731	[0.6-0.7] unit decrease	Illumina [8380626] (imputed)	N
832	chr6	32428771	32428772	rs9268839	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	6p21.32	HLA-DRB1	rs9268839-A	0.55	1E-250	(EA)	0.90412	[0.87-0.94] unit decrease	Illumina [8380626] (imputed)	N
832	chr6	32428771	32428772	rs9268839	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	6p21.32	HLA-DRB1	rs9268839-G	0.45	1E-250	(EA)	2.47	[2.39-2.55]	Affymetrix, Illumina [up to 9739303] (imputed)	N
832	chr6	32428771	32428772	rs9268839	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	6p21.32	HLA-DRB1	rs9268839-G	0.45	1E-250		2.28	[2.22-2.34]	Affymetrix, Illumina [up to 9739303] (imputed)	N
832	chr6	32428771	32428772	rs9268839	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	6p21.32	HLA-DRB1	rs9268839-G	0.44	2E-145	(East Asian)	1.9	[1.81-1.99]	Affymetrix, Illumina [up to 9739303] (imputed)	N
832	chr6	32429203	32429204	rs9268845	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	HLA-DRB9	rs9268845-T	NR	1E-11		0.0248689	[0.018-0.032] unit decrease	Affymetrix [127266] (imputed)	N
832	chr6	32429244	32429245	rs9268846	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DRB9	rs9268846-G	NR	5E-10		0.0201434	[0.014-0.026] unit increase	Affymetrix [323858] (imputed)	N
832	chr6	32429244	32429245	rs9268846	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	HLA-DRB9	rs9268846-G	NR	2E-9		0.019558	[0.013-0.026] unit increase	Affymetrix [127266] (imputed)	N
832	chr6	32429302	32429303	rs9268848	32890573	Yan Q	2020-09-02	J Allergy Clin Immunol	A genome-wide association study of asthma hospitalizations in adults.	Exacerbations requiring hospitalisation in asthma	1,658 British ancestry cases, 32,509 British ancestry controls	NA	6p21.32	NR	rs9268848-G	0.42	2E-6		0.84	[NR]	Affymetrix [87696888] (imputed)	N
832	chr6	32429302	32429303	rs9268848	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	6p21.32	HLA-DRB9	rs9268848-A	0.551419	2E-25		0.025138251	[0.02-0.03] unit increase	Affymetrix [93095623] (imputed)	N
832	chr6	32429302	32429303	rs9268848	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	6p21.32	NR	rs9268848-?	NR	3E-20				Affymetrix [~ 8270000] (imputed)	N
832	chr6	32429302	32429303	rs9268848	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	6p21.32	HLA-DRA	rs9268848-A	0.6148	6E-9	(East Asian)	0.0347	[0.023-0.046] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
832	chr6	32429581	32429582	rs9268851	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein H6PD	5,364 Icelandic ancestry individuals	NA	6p21.32		rs9268851-A	0.2209	1E-96		0.45447	[0.41-0.5] unit increase	Illumina [7506463] (imputed)	N
832	chr6	32429642	32429643	rs9268853	30552108	Kawabata Y	2018-12-14	Diabetes	A genome-Wide Association Study Confirming a Strong Effect of HLA and Identifying Variants in CSAD/lnc-ITGB7-1 on Chromosome 12q13.13 Associated with Susceptibility to Fulminant Type 1 Diabetes.	Fulminant type 1 diabetes	257 Japanese ancestry cases, 419 Japanese ancestry controls	NA	6p21.32	HLA	rs9268853-?	NR	2E-23		3.18	[2.53-4.01]	Affymetrix [426851] (imputed)	N
832	chr6	32429642	32429643	rs9268853	23511034	Yang SK	2013-04-01	Inflamm Bowel Dis	Genome-wide association study of ulcerative colitis in Koreans suggests extensive overlapping of genetic susceptibility with Caucasians.	Ulcerative colitis	388 Korean ancestry cases, 739 Korean ancestry controls	417 Korean ancestry cases, 732 Korean ancestry controls	6p21.32	MHC	rs9268853-T	0.64	3E-6		1.37	[1.20-1.56]	Illumina [581060]	N
832	chr6	32429642	32429643	rs9268853	23349640	Vijai J	2013-01-17	PLoS Genet	Susceptibility loci associated with specific and shared subtypes of lymphoid malignancies.	Lymphoma	275 Follicular non-Hodgkin's Lymphoma cases, 269 diffuse large B-cell non-Hodgkin's Lymphoma cases, 198 other non-Hodgkin's Lymphoma cases, 202 Hodgkin's Lymphoma cases, 4,044 controls	202 European ancestry Follicular non-Hodgkin's Lymphoma cases, 367 European ancestry diffuse large B-cell non-Hodgkin's Lymphoma cases, 577 European ancestry other non-Hodgkin's Lymphoma cases, 99 European ancestry Hodgkin's Lymphoma cases, 2,596 European ancestry controls	6p21.32	BTLN2, HLA-DRA, HLA-DRB5, HLA-DRB1	rs9268853-C	NR	2E-10	(FL)	1.56	[NR]	Affymetrix [530583]	N
832	chr6	32429642	32429643	rs9268853	21297633	Anderson CA	2011-02-06	Nat Genet	Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47.	Ulcerative colitis	6,687 European ancestry cases, 19,718 European ancestry controls	9,628 European ancestry cases, 12,917 European ancestry controls	6p21.32	HLA-DRA, HLA-DRB5, BTNL2, HLA-DRB1, HLA-DQA1	rs9268853-T	0.66	1E-55		1.4	[1.34-1.47]	Affymetrix, Illumina [~ 1100000] (imputed)	N
832	chr6	32429718	32429719	rs9268856	24943344	Ferrari R	2014-07-01	Lancet Neurol	Frontotemporal dementia and its subtypes: a genome-wide association study.	Frontotemporal dementia	1,377 European ancestry behavioural variant cases, 308 European ancestry Semantic dementia cases, 269 European ancestry Progressive nonfluent aphasia cases, 200 European ancestry Frontotremporal dementia with motor neuron disease cases, up to 4,308 European ancestry controls	690 European ancestry behavioural variant cases, 190 European ancestry Semantic dementia cases, 221 European ancestry Progressive nonfluent aphasia cases, 94 European ancestry Frontotremporal dementia with motor neuron disease cases, 177 European ancestry Frontotemporal lobar degeneration cases, up to 5,094 European ancestry controls	6p21.32	HLA-DRA, HLA-DRB5, BTNL2	rs9268856-C	0.748	6E-9	(All Frontotemporal dementia)	1.24	[1.16-1.32]	Illumina [6026385] (imputed)	N
832	chr6	32431146	32431147	rs9268877	29905830	Lee HS	2018-08-01	J Crohns Colitis	An Intergenic Variant rs9268877 Between HLA-DRA and HLA-DRB Contributes to the Clinical Course and Long-term Outcome of Ulcerative Colitis.	Poor prognosis in Crohn's disease	243 Korean ancestry poor prognosis cases, 364 Korean ancestry good prognosis controls	145 Korean ancestry poor prognosis cases, 129 Korean ancestry good prognosis controls	6p21.32	NA	rs9268877-A	0.35	1E-8		1.72	[1.43-2.07]	Illumina [up to 519662]	N
832	chr6	32431146	32431147	rs9268877	19915572	Barrett JC	2009-11-15	Nat Genet	Genome-wide association study of ulcerative colitis identifies three new susceptibility loci, including the HNF4A region.	Ulcerative colitis	2,361 European ancestry cases, 5,417 European ancestry controls	2,321 European ancestry cases, 4,818 European ancestry controls	6p21.32	MHC	rs9268877-?	NR	4E-23				Affymetrix [NR]	N
832	chr6	32431146	32431147	rs9268877	18836448	Franke A	2008-10-05	Nat Genet	Sequence variants in IL10, ARPC2 and multiple other loci contribute to ulcerative colitis susceptibility.	Ulcerative colitis	1,167 European ancestry cases, 777 European ancestry controls	1,855 European ancestry cases, 3,091 European ancestry controls	6p21.32	HLA-DRA, BTNL2	rs9268877-T	0.45	6E-18		1.45	[1.33-1.58]	Affymetrix [355262]	N
832	chr6	32431964	32431965	rs9268896	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs9268896-A	0.232	3E-20	(Complement C4, C4A.C4B.4481.34.2)	0.28	[0.22-0.34] unit decrease	Affymetrix [10572788] (imputed)	N
832	chr6	32432076	32432077	rs9268905	28041642	Carmona FD	2016-12-29	Am J Hum Genet	A Genome-wide Association Study Identifies Risk Alleles in Plasminogen and P4HA2 Associated with Giant Cell Arteritis.	Giant cell arteritis	2,134 European ancestry cases, 9,125 European ancestry controls	NA	6p21.32	HLA-DRA, HLA-DRB1	rs9268905-?	0.37	2E-54		1.79	[1.67-1.93]	Illumina [1844133] (imputed)	N
832	chr6	32432076	32432077	rs9268905	21602797	Wright FA	2011-05-22	Nat Genet	Genome-wide association and linkage identify modifier loci of lung disease severity in cystic fibrosis at 11p13 and 20q13.2.	Cystic fibrosis severity	2,317 European ancestry cases, 177 cases	898 European ancestry sibling pair cases, 75 sibling pair cases	6p21.32	HLA-DRA	rs9268905-C	0.32	1E-7				Illumina [~ 2609000] (imputed)	N
832	chr6	32432499	32432500	rs78218185	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Asthma	13,015 East Asian ancestry cases, 162,933 East Asian ancestry controls	NA	6p21.32		rs78218185-A	0.135952394	4E-43		0.27918372	[0.24-0.32] unit increase	Illumina [13429513] (imputed)	N
832	chr6	32432834	32432835	rs9268923	26819262	Zhou Y	2016-01-27	Mult Scler	Genetic loci for Epstein-Barr virus nuclear antigen-1 are associated with risk of multiple sclerosis.	Epstein Barr virus nuclear antigen 1 IgG levels	1,243 parents and up to 2,356 children from 992 families, 1,956 Mexican American individuals		6p21.32	HLA-DRB5, HLA-DQA1, HLA-DRA, HLA-DRB1	rs9268923-C	0.552	1E-11	(non-Mexican American parents and children)	0.18	unit increase	Illumina [up to 2428201] (imputed)	N
832	chr6	32432834	32432835	rs9268923	26819262	Zhou Y	2016-01-27	Mult Scler	Genetic loci for Epstein-Barr virus nuclear antigen-1 are associated with risk of multiple sclerosis.	Epstein Barr virus nuclear antigen 1 IgG levels	1,243 parents and up to 2,356 children from 992 families, 1,956 Mexican American individuals		6p21.32	HLA-DRA, HLA-DRB5, HLA-DQA1, HLA-DRB1	rs9268923-C	0.552	1E-13	(non-Mexican American parents)	0.252	unit increase	Illumina [up to 2428201] (imputed)	N
832	chr6	32432834	32432835	rs9268923	26819262	Zhou Y	2016-01-27	Mult Scler	Genetic loci for Epstein-Barr virus nuclear antigen-1 are associated with risk of multiple sclerosis.	Epstein Barr virus nuclear antigen 1 IgG levels	1,243 parents and up to 2,356 children from 992 families, 1,956 Mexican American individuals		6p21.32	HLA-DRA, HLA-DRB5, HLA-DQA1, HLA-DRB1	rs9268923-C	0.552	1E-11	(non-Mexican American sero-positive children)	0.225	unit increase	Illumina [up to 2428201] (imputed)	N
832	chr6	32432834	32432835	rs9268923	20228798	Franke A	2010-03-14	Nat Genet	Genome-wide association study for ulcerative colitis identifies risk loci at 7q22 and 22q13 (IL17REL).	Ulcerative colitis	1,043 European ancestry cases, 1,703 European ancestry controls	2,539 European ancestry cases, 5,428 European ancestry controls	6p21.32	HLA-DRA	rs9268923-C	0.67	4E-15		1.45	[1.33-1.59]	Affymetrix [1897764] (imputed)	N
832	chr6	32432968	32432969	rs9268925	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	6p21.32	Intergenic	rs9268925-C	NR	1E-23		0.0788801	[0.063-0.094] unit increase	Illumina [13520550] (imputed)	N
832	chr6	32433056	32433057	rs9469120	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Yeast infection	52,218 European ancestry cases, 10,235 European ancestry controls	NA	6p21.32	NR	rs9469120-?	NR	9E-8		0.0846	[0.054-0.116] unit decrease	Illumina [at least 560000] (imputed)	N
832	chr6	32433124	32433125	rs113585425	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs113585425-C	0.19	4E-8		4.04	[3.10-5.28]	Illumina [NR] (imputed)	N
832	chr6	32433166	32433167	rs2395185	25186300	Terao C	2014-09-03	Arthritis Rheumatol	Association between antinuclear antibodies and the HLA class II locus and heterogeneous characteristics of staining patterns: the Nagahama study.	Antinuclear antibody levels	3,185 Japanese ancestry individuals	3,963 Japanese ancestry individuals	6p21.32	HLA-DRA, HLA-DRB5	rs2395185-?	NR	1E-11		0.25	unit increase	Illumina [303506]	N
832	chr6	32433166	32433167	rs2395185	23143601	Lan Q	2012-11-11	Nat Genet	Genome-wide association analysis identifies new lung cancer susceptibility loci in never-smoking women in Asia.	Lung cancer	5,510 East Asian ancestry cases, 4,544 East Asian ancestry controls	1,099 East Asian ancestry cases, 2,913 East Asian ancestry controls	6p21.32	HLA class II	rs2395185-T	0.35	1E-8		1.17	[1.11-1.23]	Illumina [596032]	N
832	chr6	32433166	32433167	rs2395185	22286212	Urayama KY	2012-01-27	J Natl Cancer Inst	Genome-wide association study of classical Hodgkin lymphoma and Epstein-Barr virus status-defined subgroups.	Hodgkin's lymphoma	1,200 European ancestry cases, 6,417 European ancestry controls	563 European ancestry cases, 613 European ancestry controls	6p21.32	HLA-DRA	rs2395185-?	NR	4E-31	(Total cHL)	1.82	[1.67-2.00]	Illumina [502514]	N
832	chr6	32433166	32433167	rs2395185	20228799	McGovern DP	2010-03-14	Nat Genet	Genome-wide association identifies multiple ulcerative colitis susceptibility loci.	Ulcerative colitis	2,693 European ancestry cases, 6,791 European ancestry controls	2,009 European ancestry cases, 1,580 European ancestry controls	6p21.32	C6orf10, BTNL2, HLA	rs2395185-G	NR	9E-23		1.49	[NR]	Illumina [266047]	N
832	chr6	32433166	32433167	rs2395185	19915573	Asano K	2009-11-15	Nat Genet	A genome-wide association study identifies three new susceptibility loci for ulcerative colitis in the Japanese population.	Ulcerative colitis	376 Japanese ancestry cases, 934 Japanese ancestry controls	376 Japanese ancestry cases, 1,097 Japanese ancestry controls	6p21.32	intergenic	rs2395185-G	0.61	5E-22		1.92	[1.68-2.19]	Illumina [513923]	N
832	chr6	32433166	32433167	rs2395185	19122664	Silverberg MS	2009-01-04	Nat Genet	Ulcerative colitis-risk loci on chromosomes 1p36 and 12q15 found by genome-wide association study.	Ulcerative colitis	1,022 European ancestry cases, 2,503 European ancestry controls	1,387 European ancestry cases, 1,115 European ancestry controls	6p21.32	HLA-DQB1, HLA-DRA, BTNL2, HLA-DRB5, HLA-DRB1, HLA-DQA1	rs2395185-?	0.67	1E-16		1.52		Illumina [280748]	N
832	chr6	32433275	32433276	rs2894257	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p21.32	HLA-DRADQA2	rs2894257-C	0.53	8E-36		1.36	[1.33-1.39]	Illumina [at least 560000] (imputed)	N
832	chr6	32433317	32433318	rs2395190	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic sinusitis	4,617 East Asian ancestry cases, 152,226 East Asian ancestry controls	NA	6p21.32		rs2395190-T	0.301110024	1E-29		0.26669198	[0.22-0.31] unit decrease	Illumina [13426486] (imputed)	N
832	chr6	32433745	32433746	rs9268948	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DRB9	rs9268948-G	NR	2E-9		0.0189254	[0.013-0.025] unit decrease	Affymetrix [319769] (imputed)	N
832	chr6	32433745	32433746	rs9268948	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DRB9	rs9268948-G	NR	2E-9		0.0190762	[0.013-0.025] unit decrease	Affymetrix [319769] (imputed)	N
832	chr6	32433758	32433759	rs35880697	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6p21.32	NR	rs35880697-?	NR	7E-10				Affymetrix [~ 8270000] (imputed)	N
832	chr6	32435337	32435338	rs4947340	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	6p21.32	HLA-DRB9	rs4947340-T	0.40103	1E-52		0.0369333	[0.032-0.042] unit decrease	Affymetrix [93095623] (imputed)	N
832	chr6	32435350	32435351	rs4947257	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p21.32	NR	rs4947257-?	NR	1E-12		0.0988	[0.071-0.126] unit decrease	Illumina [at least 560000] (imputed)	N
832	chr6	32435548	32435549	rs9268989	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs9268989-A	0.378	6E-14		0.856	[0.81-0.9]	Illumina [11270530] (imputed)	N
832	chr6	32436239	32436240	rs9391782	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	6p21.32		rs9391782-C	0.36641	1E-6		0.033747	[0.02-0.047] unit increase	Affymetrix [15580782] (imputed)	N
832	chr6	32437543	32437544	rs9269029	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs9269029-A	0.176	2E-8		0.866	[0.82-0.92]	Illumina [11270530] (imputed)	N
832	chr6	32437613	32437614	rs9405038	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	High density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	6p21.32	HLA-DRA, HLA-DRB5	rs9405038-?		1E-13		0.0366	[0.027-0.046] unit decrease	Illumina [31500000] (imputed)	N
832	chr6	32438242	32438243	rs9269041	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on Dendritic Cell	2,871 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9269041-A	0.60762	1E-9		0.2062	[0.14-0.27] unit decrease	Illumina [17926566] (imputed)	N
832	chr6	32440321	32440323	rs145954018	30674883	Jin Y	2019-01-23	Nat Commun	Early-onset autoimmune vitiligo associated with an enhancer variant haplotype that upregulates class II HLA expression.	Vitiligo (early onset)	704 European ancestry cases, 9,031 European ancestry controls	375 European ancestry cases, 1,455 European ancestry controls	6p21.32	NR	rs145954018-?	NR	3E-54		4.62	[4.42-4.82]	NR [up to 494043] (imputed)	N
832	chr6	32440742	32440743	rs9357149	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.32		rs9357149-C	0.982	4E-24				Affymetrix [10369434] (imputed)	N
832	chr6	32440968	32440969	rs9269080	30578877	Dahlin A	2018-12-19	J Allergy Clin Immunol	Large-scale, multi-ethnic genome-wide association study identifies novel loci contributing to asthma susceptibility in adults.	Adult asthma	16,274 European ancestry cases, 38,269 European ancestry controls	10,365 European ancestry cases, 16,110 European ancestry controls, cases and controls (see Moffatt et al 2010)	6p21.32	HLA-DRB9	rs9269080-?	NR	1E-8		1.098901	[1.05-1.11]	Affymetrix [7230512] (imputed)	N
832	chr6	32441099	32441100	rs9269081	29196614	Sud A	2017-12-01	Nat Commun	Genome-wide association study of classical Hodgkin lymphoma identifies key regulators of disease susceptibility.	Nodular sclerosis Hodgkin lymphoma	1,278 European ancestry cases, 14,325 European ancestry controls	1,586 cases, 3,069 controls	6p21.32	HLA-DRA	rs9269081-?	NR	2E-39		1.82	[1.67-2.00]	Illumina [> 10000000] (imputed)	N
832	chr6	32441695	32441696	rs2071805	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Osteoporosis	8,520 European ancestry cases, 479,981 European ancestry controls, 9,794 East Asian ancestry cases, 168,932 East Asian ancestry controls	NA	6p21.32		rs2071805-T	NR	9E-10		0.144	[0.098-0.19] unit decrease	Affymetrix, Illumina [25844994] (imputed)	N
832	chr6	32442118	32442119	rs34452045	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs34452045-G	0.145	3E-31		0.694	[0.63-0.75]	Illumina [11270530] (imputed)	N
832	chr6	32443222	32443223	rs9269108	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p21.32	NR	rs9269108-?	NR	3E-6		4.641	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
832	chr6	32443265	32443266	rs9269109	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8+ Natural Killer T Absolute Count	3,652 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9269109-C	0.36376	3E-8		0.1671	[0.11-0.23] unit increase	Illumina [18427348] (imputed)	N
832	chr6	32443265	32443266	rs9269109	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28- CD25++ CD8+ T cell Absolute Count	3,130 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9269109-C	0.35879	1E-8		0.1597	[0.11-0.21] unit increase	Illumina [18189521] (imputed)	N
832	chr6	32443798	32443799	rs28895243	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	6p21.32	HLA-DRB9	rs28895243-G	0.039859	5E-20		0.05294043	[0.042-0.064] unit decrease	Affymetrix [93095623] (imputed)	N
832	chr6	32444067	32444068	rs116353692	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (adrenergics, inhalants)	5,880 East Asian ancestry cases, 172,846 East Asian ancestry controls	NA	6p21.32		rs116353692-C	0.139167381	2E-13		0.21394032	[0.16-0.27] unit increase	Illumina [13429980] (imputed)	N
832	chr6	32444197	32444198	rs12194148	21156761	Padyukov L	2010-12-14	Ann Rheum Dis	A genome-wide association study suggests contrasting associations in ACPA-positive versus ACPA-negative rheumatoid arthritis.	Rheumatoid arthritis	1,147 European ancestry ACPA positive RA cases, 774 European ancestry ACPA negative RA cases, 1,079 European ancestry controls	887 European ancestry ACPA positive RA cases, 1,218 European ancestry controls	6p21.32	HLA	rs12194148-?	NR	5E-58	(ACPA-positive RA vs controls)			Illumina [1723056] (imputed)	N
832	chr6	32444543	32444544	rs12195582	25279986	Skibola CF	2014-10-02	Am J Hum Genet	Genome-wide association study identifies five susceptibility loci for follicular lymphoma outside the HLA region.	Follicular lymphoma	2,728 European ancestry cases, 7,758 European ancestry controls	1,795 European ancestry cases, 5,586 European ancestry controls	6p21.32	HLA	rs12195582-T	0.465	5E-100		1.78	[1.69-1.88]	Illumina [up to 21554489]	N
832	chr6	32445144	32445145	rs9269136	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DRB9	rs9269136-G	NR	1E-11		0.0239787	[0.017-0.031] unit decrease	Affymetrix [321169] (imputed)	N
832	chr6	32445388	32445393	rs200093869	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Iron deficiency anemia	12,317 European ancestry cases, 468,624 European ancestry controls, 4,618 East Asian ancestry cases, 174,057 East Asian ancestry controls	NA	6p21.32		rs200093869-C	NR	1E-12		0.1142	[0.083-0.146] unit increase	Affymetrix, Illumina [25844780] (imputed)	N
832	chr6	32445498	32445499	rs9269143	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DRB9	rs9269143-T	NR	2E-9		0.0207074	[0.014-0.027] unit decrease	Affymetrix [319769] (imputed)	N
832	chr6	32445498	32445499	rs9269143	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DRB9	rs9269143-T	NR	1E-8		0.0198652	[0.013-0.027] unit decrease	Affymetrix [319769] (imputed)	N
832	chr6	32445690	32445691	rs9378212	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	6p21.32	NR	rs9378212-T	0.469078	7E-211		0.059685	[0.056-0.063] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
832	chr6	32445690	32445691	rs9378212	27286809	Ligthart S	2016-06-10	BMC Genomics	Bivariate genome-wide association study identifies novel pleiotropic loci for lipids and inflammation.	C-reactive protein levels or HDL-cholesterol levels (pleiotropy)	65,000 individuals (C-reactive protein), 99,900 individuals (HDL-cholesterol)	NA	6p21.32	HLA-DRA	rs9378212-T	NR	7E-10				NR [2501543] (imputed)	N
832	chr6	32445915	32445916	rs28895267	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.32		rs28895267-C	0.518	1E-110				Affymetrix [10369434] (imputed)	N
832	chr6	32445915	32445916	rs28895267	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DRB9	rs28895267-T	NR	9E-16		0.0253192	[0.019-0.031] unit increase	Affymetrix [323858] (imputed)	N
832	chr6	32445915	32445916	rs28895267	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	HLA-DRB9	rs28895267-T	NR	4E-15		0.0247032	[0.019-0.031] unit increase	Affymetrix [127266] (imputed)	N
832	chr6	32445991	32445992	rs17209866	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p21.32	NR	rs17209866-A	0.453955	2E-344				Affymetrix, Illumina [24649327] (imputed)	N
832	chr6	32446458	32446459	rs17203563	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28- CD127- CD25++ CD8+ T cell Absolute Count	3,130 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs17203563-A	0.26383	5E-8		0.1789	[0.11-0.24] unit increase	Illumina [18189521] (imputed)	N
832	chr6	32446716	32446717	rs7453498	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Dementia and core Alzheimer's disease neuropathologic changes	up to 3,887 cases, up to 1,027 controls	NA	6p21.32	intergenic	rs7453498-C	0.8656	3E-6	(Complete)	0.8142	[0.47-1.16] unit increase	Affymetrix, Illumina [NR] (imputed)	N
832	chr6	32447084	32447085	rs2395191	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic obstructive pulmonary disease	13,530 European ancestry cases, 454,945 European ancestry controls, 4,017 East Asian ancestry cases, 162,653 East Asian ancestry controls	NA	6p21.32		rs2395191-C	NR	9E-10		0.077	[0.052-0.102] unit increase	Affymetrix, Illumina [25843162] (imputed)	N
832	chr6	32447084	32447085	rs2395191	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8 on Natural Killer T	3,103 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs2395191-C	0.36584	2E-9		0.1751	[0.12-0.23] unit increase	Illumina [18027570] (imputed)	N
832	chr6	32447084	32447085	rs2395191	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs2395191-C	NR	6E-10		1.1764705	[1.12-1.24]	Affymetrix [7846216] (imputed)	N
832	chr6	32447643	32447644	rs2395192	33204752	Butler-Laporte G	2020-09-24	Open Forum Infect Dis	Genetic Determinants of Antibody-Mediated Immune Responses to Infectious Diseases Agents: A Genome-Wide and HLA Association Study.	Epstein-Barr virus EA-D antibody levels	7,763 White British ancestry individuals	NA	6p21.32	HLA-DRB9	rs2395192-C	0.440	3E-16		0.13	[0.099-0.161] unit decrease	NR [25472218] (imputed)	N
832	chr6	32447643	32447644	rs2395192	31102405	Labreche K	2019-05-17	Neuro Oncol	A genome-wide association study identifies susceptibility loci for primary central nervous system lymphoma at 6p25.3 and 3p22.1: a LOC network study.	Primary central nervous system lymphoma	475 European ancestry cases, 1,134 European ancestry controls	NA	6p21.32	HLA-DRA	rs2395192-C	0.59	2E-7		1.51	[1.29-1.76]	Illumina [> 10000000] (imputed)	N
832	chr6	32448128	32448129	rs4410767	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p21.32		rs4410767-T	0.526	5E-70				Affymetrix [10369434] (imputed)	N
832	chr6	32448397	32448398	rs9378213	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR+ CD8+ T cell Absolute Count	3,579 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9378213-T	0.69391	5E-15		0.2434	[0.18-0.3] unit decrease	Illumina [18377359] (imputed)	N
832	chr6	32448397	32448398	rs9378213	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR+ CD8+ T cell %T cell	3,595 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9378213-T	0.6942999999999999	4E-11		0.1984	[0.14-0.26] unit decrease	Illumina [18380839] (imputed)	N
832	chr6	32448397	32448398	rs9378213	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.32	NOTCH4, C6orf10	rs9378213-G	0.41690000000000005	4E-8	(EA)	0.0227	[0.015-0.031] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
832	chr6	32448397	32448398	rs9378213	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6p21.32	BTNL2	rs9378213-G	0.41690000000000005	6E-7	(EA)	0.0232	[0.014-0.032] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
832	chr6	32448397	32448398	rs9378213	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.32	NOTCH4, C6orf10	rs9378213-?	0.41690000000000005	1E-7	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
832	chr6	32448560	32448561	rs9391786	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Automobile speeding propensity	404,291 European ancestry individuals	NA	6p21.32	HLA-DRB5	rs9391786-A	0.5802	2E-9		0.013639976	[0.0092-0.0181] unit increase	Affymetrix [11514463] (imputed)	N
832	chr6	32448598	32448599	rs7748270	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	6p21.32		rs7748270-?	NR	4E-12		0.00632062	[0.0045-0.0081] unit decrease	NR [NR]	N
832	chr6	32448598	32448599	rs7748270	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.32		rs7748270-C	0.487	1E-35				Affymetrix [10369434] (imputed)	N
832	chr6	32448598	32448599	rs7748270	24782177	Jiang L	2014-05-01	Arthritis Rheumatol	Novel risk loci for rheumatoid arthritis in Han Chinese and congruence with risk variants in Europeans.	Rheumatoid arthritis	433 Han Chinese ancestry ACPA positive cases, 519 Han Chinese ancestry ACPA negative cases, 943 Han Chinese ancestry controls	1,032 Han Chinese ancestry ACPA positive cases, 1,100 Han Chinese ancestry ACPA negative cases, 2,553 Han Chinese ancestry controls	6p21.32	MHC	rs7748270-T	0.525	4E-13	(all cases vs. all controls)	1.7361	[NR]	Affymetrix [3441843] (imputed)	N
832	chr6	32448598	32448599	rs7748270	24782177	Jiang L	2014-05-01	Arthritis Rheumatol	Novel risk loci for rheumatoid arthritis in Han Chinese and congruence with risk variants in Europeans.	Rheumatoid arthritis	433 Han Chinese ancestry ACPA positive cases, 519 Han Chinese ancestry ACPA negative cases, 943 Han Chinese ancestry controls	1,032 Han Chinese ancestry ACPA positive cases, 1,100 Han Chinese ancestry ACPA negative cases, 2,553 Han Chinese ancestry controls	6p21.32	MHC	rs7748270-T	0.525	1E-16	(ACPA+ cases vs. all controls)	2.01	[NR]	Affymetrix [3441843] (imputed)	N
832	chr6	32448729	32448730	rs116149201	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cervical cancer	6,563 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs116149201-G	NR	3E-9		3.5068	NR	Affymetrix [7846216] (imputed)	N
832	chr6	32448987	32448988	rs7749223	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	6p21.32		rs7749223-G	0.167732	2E-9		0.02290938	[0.015-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
832	chr6	32449410	32449411	rs1964995	31375628	Tengvall K	2019-08-02	Proc Natl Acad Sci U S A	Molecular mimicry between Anoctamin 2 and Epstein-Barr virus nuclear antigen 1 associates with multiple sclerosis risk.	Anti-anoctamin 2 antibody levels	11,936 European ancestry individuals	NA	6p21.32	NR	rs1964995-G	NR	2E-10		0.065	[0.041-0.089] unit decrease	Illumina [615763]	N
832	chr6	32449410	32449411	rs1964995	31102405	Labreche K	2019-05-17	Neuro Oncol	A genome-wide association study identifies susceptibility loci for primary central nervous system lymphoma at 6p25.3 and 3p22.1: a LOC network study.	Primary central nervous system lymphoma	475 European ancestry cases, 1,134 European ancestry controls	NA	6p21.32	NR	rs1964995-?	NR	4E-6		1.44	[1.23-1.68]	Illumina [> 10000000] (imputed)	N
832	chr6	32449410	32449411	rs1964995	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (non-Lofgren's syndrome)	568 Swedish ancestry cases, 2,025 Swedish ancestry controls	763 European ancestry cases, 4,901 European ancestry controls, 781 African American ancestry cases, 876 African American ancestry controls	6p21.32	HLA-DRA, HLA-DRB5	rs1964995-A	0.72	3E-32		1.67	[1.54-1.82]	Illumina [118177]	N
832	chr6	32449410	32449411	rs1964995	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (non-Lofgren's syndrome without extrapulmonary manifestations)	451 Swedish ancestry cases, 2,086 Swedish ancestry controls	NA	6p21.32	HLA-DRA, HLA-DRB5, C6orf10, BTNL2	rs1964995-A	0.7	4E-15		1.8165305	[1.57-2.11]	Illumina [118177]	N
832	chr6	32449522	32449523	rs9269202	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Nephrotic syndrome	1,314 East Asian ancestry cases, 177,412 East Asian ancestry controls	NA	6p21.32		rs9269202-C	0.823377102	5E-10		0.3571471	[0.24-0.47] unit decrease	Illumina [13429980] (imputed)	N
832	chr6	32449895	32449896	rs9269207	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs9269207-T	0.622	6E-48		0.754	[0.72-0.79]	Illumina [11270530] (imputed)	N
832	chr6	32449962	32449963	rs367607265	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.32	Intergenic	rs367607265-?		2E-7		1.74	[1.41-2.14]	Illumina [7645193] (imputed)	N
832	chr6	32450088	32450089	rs5020946	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PIGA	5,367 Icelandic ancestry individuals	NA	6p21.32		rs5020946-T	0.3884	4E-13		0.140613	[0.1-0.18] unit increase	Illumina [7506463] (imputed)	N
832	chr6	32450088	32450089	rs5020946	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	6p21.32	intergenic	rs5020946-T	0.4659	1E-94		0.07445833	[0.067-0.082] unit increase	Affymetrix [~ 2500000] (imputed)	N
832	chr6	32450088	32450089	rs5020946	26785701	Wen W	2016-01-20	Sci Rep	Genome-wide association studies in East Asians identify new loci for waist-hip ratio and waist circumference.	Waist-to-hip ratio adjusted for body mass index	up to 39,869 East Asian individuals	up to 20,137 East Asian individuals, up to 209,947 individuals	6p21.32	HLA-DRB5	rs5020946-T	0.411	1E-9	(East Asian)	0.031	[0.021-0.041] unit increase	Affymetrix, Illumina [at least 1850000] (imputed)	N
832	chr6	32450088	32450089	rs5020946	26785701	Wen W	2016-01-20	Sci Rep	Genome-wide association studies in East Asians identify new loci for waist-hip ratio and waist circumference.	Waist-to-hip ratio adjusted for body mass index	up to 39,869 East Asian individuals	up to 20,137 East Asian individuals, up to 209,947 individuals	6p21.32	HLA-DRB5	rs5020946-T	0.4108017315260166	4E-8	(East Asian women)	0.03568	[0.023-0.048] unit increase	Affymetrix, Illumina [at least 1850000] (imputed)	N
832	chr6	32450133	32450134	rs5020945	33209044	Ahn Y	2020-11-12	Diabetes Metab Syndr Obes	Identification of Genetic Variants for Female Obesity and Evaluation of the Causal Role of Genetically Defined Obesity in Polycystic Ovarian Syndrome.	Waist-hip ratio	4,658 Korean ancestry females	5,295 Korean ancestry females	6p21.32	NR	rs5020945-C	0.49	3E-7		0.005	[0.003-0.007] unit increase	Affymetrix [NR] (imputed)	N
832	chr6	32450579	32450580	rs35957722	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p21.32	NR	rs35957722-?	NR	4E-10		0.0687	[0.047-0.09] unit decrease	Illumina [at least 560000] (imputed)	N
832	chr6	32451361	32451362	rs113103322	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on plasmacytoid Dendritic Cell	2,872 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs113103322-A	0.11666	2E-27		0.5638	[0.46-0.66] unit increase	Illumina [17926607] (imputed)	N
832	chr6	32451483	32451484	rs28437337	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	6p21.32		rs28437337-T	0.36183	6E-8		0.038474	[0.025-0.052] unit increase	Affymetrix [15580782] (imputed)	N
832	chr6	32451757	32451758	rs78279385	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	CAG-180 sp000432435 abundance in stool	5,959 Finnish ancestry individuals	NA	6p21.32		rs78279385-A	0.255984	3E-8		0.158067	[0.1-0.21] unit increase	Illumina [7980478] (imputed)	N
832	chr6	32451757	32451758	rs78279385	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	74,970 East Asian ancestry individuals	NA	6p21.32		rs78279385-A	0.478006	1E-14		0.0379801	[0.028-0.048] unit increase	Illumina [13465896] (imputed)	N
832	chr6	32451761	32451762	rs9269233	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs9269233-A	0.23	3E-11		1.17	[1.12-1.22]	Illumina [11270530] (imputed)	N
832	chr6	32451787	32451788	rs9269234	28118524	Saxena R	2017-01-24	Arthritis Rheumatol	A Multinational Arab Genome-Wide Association Study Identifies New Genetic Associations for Rheumatoid Arthritis.	Rheumatoid arthritis (rheumatoid factor and/or anti-cyclic citrullinated peptide seropositive)	357 African admixed and non-African admixed Arab ancestry cases, 352 African admixed and non-African admixed Arab ancestry controls	234 Arab ancestry cases, 225 Arab ancestry controls	6p21.32	HLA-DRB1	rs9269234-G	0.65	6E-16		2.14	[1.78-2.57]	Illumina [7000653] (imputed)	N
832	chr6	32451787	32451788	rs9269234	28118524	Saxena R	2017-01-24	Arthritis Rheumatol	A Multinational Arab Genome-Wide Association Study Identifies New Genetic Associations for Rheumatoid Arthritis.	Rheumatoid arthritis	97 African admixed Arab ancestry cases, 410 non-African admixed Arab ancestry cases, 4 Arab ancestry cases, 56 African admixed Arab ancestry controls, 290 non-African admixed Arab ancestry controls, 6 Arab ancestry controls	283 Arab ancestry cases, 221 Arab ancestry controls	6p21.32	HLA-DRB1	rs9269234-G	0.65	5E-11		1.75	[1.48-2.06]	Illumina [7000653] (imputed)	N
832	chr6	32451833	32451834	rs62405562	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on naive-mature B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs62405562-G	0.45562	9E-11		0.1848	[0.13-0.24] unit increase	Illumina [18238311] (imputed)	N
832	chr6	32451833	32451834	rs62405562	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on IgD+ CD38dim B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs62405562-G	0.45562	2E-15		0.2285	[0.17-0.28] unit increase	Illumina [18238311] (imputed)	N
832	chr6	32451833	32451834	rs62405562	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on IgD+ CD24- B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs62405562-G	0.45562	1E-11		0.1942	[0.14-0.25] unit increase	Illumina [18238311] (imputed)	N
832	chr6	32451833	32451834	rs62405562	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on IgD+ B cell	3,658 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs62405562-G	0.45576	2E-11		0.1921	[0.14-0.25] unit increase	Illumina [18238340] (imputed)	N
832	chr6	32451896	32451897	rs2395201	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	6p21.32	NR	rs2395201-?	NR	6E-17	(CCL19)	0.579204	[0.44-0.71] unit increase	Illumina [11901634] (imputed)	N
832	chr6	32451943	32451944	rs2395203	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on plasmacytoid Dendritic Cell	2,872 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs2395203-G	0.0565	3E-13		0.4964	[0.36-0.63] unit increase	Illumina [17926607] (imputed)	N
832	chr6	32452050	32452051	rs2395205	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on Dendritic Cell	2,871 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs2395205-G	0.04986	7E-10		0.4528	[0.31-0.6] unit increase	Illumina [17926566] (imputed)	N
832	chr6	32452141	32452142	rs1974459	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	6p21.32		rs1974459-G	0.068544	5E-19		0.040665817	[0.032-0.05] unit increase	Affymetrix [93095623] (imputed)	N
832	chr6	32452201	32452202	rs1557550	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	6p21.32		rs1557550-T	0.0574940000000001	7E-28		0.0534048	[0.044-0.063] unit increase	Affymetrix [93095623] (imputed)	N
832	chr6	32452406	32452407	rs2395209	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Receptor for advanced glycosylation end products levels	21,758 European ancestry individuals	9,173 individuals	6p21.32		rs2395209-T	0.16	1E-17		0.1071	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
832	chr6	32452469	32452470	rs28599891	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	6p21.32	intergenic	rs28599891-G	0.7051	5E-14		0.03041702	[0.023-0.038] unit increase	Affymetrix [~ 2500000] (imputed)	N
832	chr6	32452586	32452587	rs28368843	33119750	Vergara C	2020-10-29	J Infect Dis	A multi-ancestry sex stratified genome-wide association study of spontaneous clearance of hepatitis C virus.	Hepatitis C (spontaneous viral clearance)	239 African ancestry male cases, 1,184 African ancestry male controls, 206 African ancestry female cases, 572 African ancestry female controls, 489 European ancestry male cases, 703 European ancestry male controls, 212 European ancestry female cases, 332 European ancestry female controls, 91 Hispanic male cases, 197 Hispanic male controls, 82 Hispanic female cases, 116 Hispanic female controls	NA	6p21.32	NR	rs28368843-T	0.07	5E-7	(female)	2.38	[NR]	Illumina [5730693] (imputed)	N
832	chr6	32452601	32452602	rs28453249	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	HLA-DRB9	rs28453249-T	NR	2E-13		0.021088	[0.015-0.027] unit increase	Affymetrix [321114] (imputed)	N
832	chr6	32452625	32452626	rs28561769	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p21.32	NR	rs28561769-G	0.459185	3E-228				Affymetrix, Illumina [23114412] (imputed)	N
832	chr6	32453190	32453191	rs6916742	26819262	Zhou Y	2016-01-27	Mult Scler	Genetic loci for Epstein-Barr virus nuclear antigen-1 are associated with risk of multiple sclerosis.	Epstein Barr virus nuclear antigen 1 IgG levels	1,243 parents and up to 2,356 children from 992 families, 1,956 Mexican American individuals		6p21.32	HLA-DRA, HLA-DRB5, HLA-DQA1, HLA-DRB1	rs6916742-C	0.569	6E-6	(non-Mexican American children)	0.16	unit decrease	Illumina [up to 2428201] (imputed)	N
832	chr6	32453270	32453271	rs138024423	33589587	Sakaue S	2021-02-15	Nat Commun	Genetic determinants of risk in autoimmune pulmonary alveolar proteinosis.	Autoimmune pulmonary alveolar proteinosis	198 Japanese ancestry cases, 395 Japanese ancestry controls	NA	6p21.32		rs138024423-G	0.072	2E-12		5.2	[3.3-8.2]	Illumina [12153232] (imputed)	N
832	chr6	32453589	32453590	rs76733997	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DRB9	rs76733997-A	NR	3E-13		0.0290897	[0.021-0.037] unit decrease	Affymetrix [323858] (imputed)	N
832	chr6	32453852	32453853	rs112112734	31596875	Traylor M	2019-10-09	PLoS One	Genetic associations with radiological damage in rheumatoid arthritis: Meta-analysis of seven genome-wide association studies of 2,775 cases.	Joint damage in rheumatoid arthritis	2,527 European ancestry individuals, 196 African ancestry individuals, 52 individuals	NA	6p21.32	HLA-DRB5, HLA-DRB6, HLA-DRB1	rs112112734-?	NR	4E-8				Affymetrix, Illumina [4802696] (imputed)	N
832	chr6	32453852	32453853	rs112112734	31596875	Traylor M	2019-10-09	PLoS One	Genetic associations with radiological damage in rheumatoid arthritis: Meta-analysis of seven genome-wide association studies of 2,775 cases.	Joint damage in rheumatoid arthritis	2,527 European ancestry individuals	NA	6p21.32	intergenic	rs112112734-?	NR	9E-8				Affymetrix, Illumina [2723488] (imputed)	N
832	chr6	32453935	32453936	rs112062732	32723749	Kwon YC	2020-07-28	Ann Rheum Dis	Genome-wide association study in a Korean population identifies six novel susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis	4,068 Korean ancestry cases, 36,487 Korean ancestry controls	NA	6p21.32	HLA-DRB1	rs112062732-?		6E-227		2.44	[2.31-2.58]	Illumina [NR] (imputed)	N
832	chr6	32453935	32453936	rs112062732	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	6p21.32	intergenic	rs112062732-C	0.4128	3E-30		0.04384147	[0.036-0.051] unit increase	Affymetrix [~ 2500000] (imputed)	N
832	chr6	32454277	32454278	rs75219938	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs75219938-T	0.299	7E-13	(Rac GTPase-activating protein 1, RACGAP1.13587.10.3)	0.22	[0.16-0.28] unit decrease	Affymetrix [10572788] (imputed)	N
832	chr6	32454277	32454278	rs75219938	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs75219938-T	0.299	4E-49	(HLA class II histocompatibility antigen, DQ alpha 2 chain, HLA.DQA2.7757.5.3)	0.45	[0.39-0.51] unit increase	Affymetrix [10572788] (imputed)	N
832	chr6	32454836	32454837	rs142972412	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.32	HLA-DRB1, HLA-DRB5, HLA-DRB6	rs142972412-T		1E-12		1.09	[1.06-1.12]	Affymetrix, Illumina [NR]	N
832	chr6	32454967	32454968	rs73401330	34532061	Hodel F	2021-06-11	Virus Evol	Human genomics of the humoral immune response against polyomaviruses.	Anti-Merkel cell polyomavirus IgG seropositivity	8,091 European ancestry antibody-positive cases, up to 3,623 European ancestry antibody-negative controls	NA	6p21.32		rs73401330-?	NR	8E-29				Affymetrix [NR] (imputed)	N
832	chr6	32455082	32455083	rs144515162	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	HLA-DRB9	rs144515162-G	0.131	8E-12	(Ubiquitin carboxyl-terminal hydrolase 25, USP25.9215.117.3)	0.29	[0.21-0.37] unit increase	Affymetrix [10572788] (imputed)	N
832	chr6	32455082	32455083	rs144515162	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	HLA-DRB9	rs144515162-G	0.131	3E-13	(Hepatocyte nuclear factor 4-alpha, HNF4A.10041.3.3)	0.31	[0.23-0.39] unit increase	Affymetrix [10572788] (imputed)	N
832	chr6	32455082	32455083	rs144515162	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	HLA-DRB9	rs144515162-G	0.131	1E-30	(Complement C4, C4A.C4B.4481.34.2)	0.48	[0.4-0.56] unit increase	Affymetrix [10572788] (imputed)	N
832	chr6	32455082	32455083	rs144515162	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	HLA-DRB9	rs144515162-G	0.131	1E-13	(Interleukin-21, IL21.7124.18.3)	0.32	[0.24-0.4] unit increase	Affymetrix [10572788] (imputed)	N
832	chr6	32455964	32455965	rs111688133	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	6p21.32		rs111688133-A	0.14164	5E-26		0.041852646	[0.034-0.05] unit increase	Affymetrix [93095623] (imputed)	N
832	chr6	32457789	32457790	rs115664621	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	6p21.32	HLA-DRA, HLA-DRB5	rs115664621-G	NR	8E-35		1.223	[1.19-1.25]	Affymetrix [9000000] (imputed)	N
832	chr6	32457959	32457960	rs114067101	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.32	NR	rs114067101-A	0.95	6E-11	(EA)	0.082	unit decrease	Affymetrix [at least 7091467] (imputed)	N
832	chr6	32457959	32457960	rs114067101	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.32	NR	rs114067101-A	0.95	2E-7	(EA)	0.067	unit decrease	Affymetrix [at least 7091467] (imputed)	N
832	chr6	32457959	32457960	rs114067101	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	LDL cholesterol	up 62,166 European ancestry individuals	NA	6p21.32	HLA-area	rs114067101-G	0.09	8E-13		0.091	[0.066-0.116] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
832	chr6	32457959	32457960	rs114067101	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	Cholesterol, total	up to 62,166 European ancestry individuals	NA	6p21.32	HLA-area	rs114067101-G	0.09	1E-16		0.102	[0.078-0.126] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
832	chr6	32460749	32460750	rs76380179	27864402	Harris SE	2017-06-01	Int J Epidemiol	Molecular genetic contributions to self-rated health.	Self-rated health	111,749 British ancestry individuals	NA	6p21.32	HLA	rs76380179-?	NR	6E-10		0.038	[NR] unit increase	Affymetrix [~ 17300000] (imputed)	N
832	chr6	32460797	32460798	rs113534515	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs113534515-C	0.288	4E-17	(Complement C4, C4A.C4B.4481.34.2)	0.26	[0.2-0.32] unit increase	Affymetrix [10572788] (imputed)	N
832	chr6	32460866	32460867	rs78325334	29313844	Willems SM	2017-07-12	Nat Commun	Large-scale GWAS identifies multiple loci for hand grip strength providing biological insights into muscular fitness.	Hand grip strength	142,035 European ancestry individuals	53,145 European ancestry individuals	6p21.32	HLA region	rs78325334-T	0.843	1E-9		0.1858	[0.13-0.25] kg increase	Affymetrix [at least 17000000] (imputed)	N
832	chr6	32468996	32468997	rs144975609	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta minimum area	35,110 individuals	NA	6p21.32		rs144975609-C	0.605136	1E-8		0.0398472	[0.025-0.054] increase	Affymetrix [NR]	N
832	chr6	32469011	32469012	rs73403121	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	6p21.32		rs73403121-C	0.45287	2E-14		0.01814787	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
832	chr6	32469420	32469421	rs77278603	33143745	Andlauer TFM	2020-11-04	BMC Med	Treatment- and population-specific genetic risk factors for anti-drug antibodies against interferon-beta: a GWAS.	Neutralising antibody response to interferon beta therapy in multiple sclerosis (presence of antibodies; IFN?-1a subcutaneous and intramuscular)	up to 2,000 German and Swedish ancestry individuals	up to 757 German and Swedish ancestry individuals	6p21.32		rs77278603-A	NR	2E-24		1.06	[0.86-1.26] unit increase	Illumina [8550834] (imputed)	N
832	chr6	32469674	32469675	rs74661798	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs74661798-A	0.119	2E-15	(Interleukin-21, IL21.7124.18.3)	0.35	[0.27-0.43] unit increase	Affymetrix [10572788] (imputed)	N
832	chr6	32469674	32469675	rs74661798	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs74661798-A	0.119	1E-32	(Complement C4, C4A.C4B.4481.34.2)	0.52	[0.44-0.6] unit increase	Affymetrix [10572788] (imputed)	N
832	chr6	32472106	32472107	rs75560072	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	6p21.32	intergenic	rs75560072-C	NR	1E-6	(EA)			Illumina [up to 11995908] (imputed)	N
832	chr6	32472667	32472668	rs77021177	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholines levels	115,006 European ancestry individuals	NA	6p21.32		rs77021177-G	0.389793	1E-12		0.0296725	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
832	chr6	32472667	32472668	rs77021177	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphoglycerides levels	115,006 European ancestry individuals	NA	6p21.32		rs77021177-G	0.389793	1E-14		0.0322557	[0.024-0.04] unit decrease	NR [11722792] (imputed)	N
832	chr6	32472667	32472668	rs77021177	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphatidylcholine levels	115,006 European ancestry individuals	NA	6p21.32		rs77021177-G	0.389793	4E-13		0.0301021	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
832	chr6	32472667	32472668	rs77021177	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small HDL	115,082 European ancestry individuals	NA	6p21.32		rs77021177-G	0.389764	2E-18		0.0381464	[0.03-0.047] unit decrease	NR [11722792] (imputed)	N
832	chr6	32473006	32473007	rs79040733	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.32	NR	rs79040733-TG	0.01	4E-14		0.702532	[0.52-0.88] unit increase	Affymetrix [up to 8900000] (imputed)	N
832	chr6	32473006	32473007	rs79040733	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.32	NR	rs79040733-TG	0.01	2E-8	(women)	0.915222	[0.6-1.23] unit increase	Affymetrix [up to 8900000] (imputed)	N
832	chr6	32473541	32473542	rs138002663	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	6p21.32		rs138002663-T	0.8004	5E-9		44.327442	z score increase	NR [6814003]	N
832	chr6	32473587	32473588	rs111344982	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs111344982-A	0.504	2E-15	(Interleukin-21, IL21.7124.18.3)	0.22	[0.16-0.28] unit decrease	Affymetrix [10572788] (imputed)	N
832	chr6	32473982	32473983	rs113788164	29458411	Chung J	2018-02-20	Alzheimers Res Ther	Genome-wide pleiotropy analysis of neuropathological traits related to Alzheimer's disease.	Neuritic plaques or neurofibrillary tangles (pleiotropy)	3,135 European ancestry Alzheimer's disease cases, 463 European ancestry controls	NA	6p21.32	HLA	rs113788164-?	NR	6E-6				NR [6500000] (imputed)	N
832	chr6	32478583	32478584	rs188190243	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.32	intergenic	rs188190243-?		3E-8		1.1111112	[1.08-1.15]	Affymetrix, Illumina [NR]	N
832	chr6	32479520	32479521	rs116182620	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.32	intergenic	rs116182620-A		3E-11		1.19	[1.13-1.25]	Affymetrix, Illumina [NR]	N
832	chr6	32482101	32482102	rs146618240	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	6p21.32	HLA-DRA, HLA-DRB5	rs146618240-A	NR	1E-22		1.072	[1.06-1.09]	Affymetrix [9000000] (imputed)	N
832	chr6	32482155	32482155	rs148331983	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.32	NR	rs148331983-AGTTTATCCATTTT	0.019	6E-6	(women)	0.614717	[0.35-0.88] unit increase	Affymetrix [up to 8900000] (imputed)	N
832	chr6	32482155	32482155	rs148331983	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.32	NR	rs148331983-AGTTTATCCATTTT	0.019	2E-10		0.463987	[0.32-0.61] unit increase	Affymetrix [up to 8900000] (imputed)	N
832	chr6	32482296	32482297	rs184153866	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.32	HLA-DRB1, HLA-DRB5, HLA-DRB6	rs184153866-A		2E-13		1.1	[1.08-1.13]	Affymetrix, Illumina [NR]	N
832	chr6	32484519	32484520	rs138748427	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 1 diabetes	1,219 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	6p21.32		rs138748427-A	0.507810792	3E-9		0.29127777	[0.2-0.39] unit increase	Illumina [13421694] (imputed)	N
832	chr6	32485061	32485062	rs115641444	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.32	HLA-DRB5	rs115641444-C		3E-9		1.1	[1.06-1.13]	Affymetrix, Illumina [NR]	N
832	chr6	32485622	32485623	rs114604222	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs114604222-G	0.16	7E-19	(Ubiquitin carboxyl-terminal hydrolase 25, USP25.9215.117.3)	0.35	[0.27-0.43] unit increase	Affymetrix [10572788] (imputed)	N
832	chr6	32485622	32485623	rs114604222	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs114604222-G	0.16	2E-25	(Complement C4, C4A.C4B.4481.34.2)	0.41	[0.33-0.49] unit increase	Affymetrix [10572788] (imputed)	N
832	chr6	32485654	32485655	rs199910997	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	6p21.32	NR	rs199910997-A	0.439547	2E-15		0.0105299	[0.008-0.0131] unit increase	Affymetrix [16582621] (imputed)	N
832	chr6	32485654	32485655	rs199910997	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	6p21.32	NR	rs199910997-A	0.439547	2E-12		0.00998442	[0.0073-0.0127] unit increase	Affymetrix [16582614] (imputed)	N
832	chr6	32485943	32485944	rs139547629	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.32	HLA-DRB1, HLA-DRB5, HLA-DRB6	rs139547629-T		1E-9		1.09	[1.06-1.12]	Affymetrix, Illumina [NR]	N
832	chr6	32486401	32486402	rs41553512	29036319	Qi H	2017-09-26	Hum Mol Genet	Discovery of susceptibility loci associated with tuberculosis in Han Chinese.	Tuberculosis	972 Chinese ancestry cases, 1,537 Chinese ancestry controls	3,338 Chinese ancestry cases, 4,849 Chinese ancestry controls	6p21.32	BTNL2, C6OF10, HCG23, HLA-DRA, HLA-DRB5, HLA-DRB1, HLA-DRB6, HLA-DQB1, HLA- DQA1	rs41553512-?	0.016	8E-11		2.14	[1.78-2.57]	Illumina [691388]	N
832	chr6	32486964	32486965	rs192955957	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	6p21.32	HLA-DRB5	rs192955957-C	0.895903	5E-28		0.0462389	[0.038-0.055] unit decrease	Affymetrix [NR] (imputed)	N
832	chr6	32486965	32486966	rs184981897	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.32	HLA-DRB1, HLA-DRB5, HLA-DRB6	rs184981897-?		2E-8		1.0869565	[1.05-1.11]	Affymetrix, Illumina [NR]	N
832	chr6	32487067	32487068	rs72508429	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	6p21.32		rs72508429-T	0.384252	7E-18		0.0406337	[0.031-0.05] unit decrease	NR [11722792] (imputed)	N
832	chr6	32487360	32487361	rs142804168	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	HDL cholesterol levels	115,082 European ancestry individuals	NA	6p21.32		rs142804168-G	0.881756	2E-8		0.0397614	[0.026-0.054] unit increase	NR [11722792] (imputed)	N
832	chr6	32487493	32487494	rs543838540	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.32	HLA-DRB5	rs543838540-G	0.083195	7E-15		0.05558447	[0.042-0.07] unit increase	Affymetrix [93095623] (imputed)	N
832	chr6	32487986	32487987	rs140973961	28289848	Haralambieva IH	2017-04-01	Hum Genet	Genome-wide associations of CD46 and IFI44L genetic variants with neutralizing antibody response to measles vaccine.	Immune response to measles vaccine (measles-induced IFN gamma)	up to 2,555 European ancestry individuals, up to 317 African American individuals	NA	6p21.32	HLA-DRB5	rs140973961-C	0.34	1E-6				Illumina [at least 508199]	N
832	chr6	32488049	32488050	rs113397282	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.32	HLA-DRB5	rs113397282-T		6E-12		1.11	[1.08-1.15]	Affymetrix, Illumina [NR]	N
832	chr6	32488080	32488081	rs191018606	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs191018606-C	0.706	5E-14	(Complement C4, C4A.C4B.4481.34.2)	0.23	[0.17-0.29] unit decrease	Affymetrix [10572788] (imputed)	N
832	chr6	32488768	32488769	rs149961934	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.32	HLA-DRB1, HLA-DRB5, HLA-DRB6	rs149961934-?		3E-8		1.0752687	[1.04-1.1]	Affymetrix, Illumina [NR]	N
832	chr6	32489031	32489032	rs114875775	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.32	HLA-DRB5	rs114875775-A		4E-8		1.13	[1.08-1.17]	Affymetrix, Illumina [NR]	N
832	chr6	32489595	32489596	rs191269336	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.32	HLA-DRB5	rs191269336-A		5E-9		1.09	[1.06-1.12]	Affymetrix, Illumina [NR]	N
832	chr6	32489678	32489679	rs117108573	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	6p21.32	HLA-DRB5	rs117108573-T	0.0816	6E-9		0.003	[0.002-0.004] unit decrease	Affymetrix [15275733] (imputed)	N
832	chr6	32489794	32489795	rs144532965	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.32	HLA-DRB1, HLA-DRB5, HLA-DRB6	rs144532965-?		1E-11		1.1111112	[1.08-1.14]	Affymetrix, Illumina [NR]	N
832	chr6	32490365	32490366	rs184538485	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.32	HLA-DRB5	rs184538485-A		7E-9		1.08	[1.05-1.10]	Affymetrix, Illumina [NR]	N
832	chr6	32490606	32490607	rs140849564	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.32	HLA-DRB5	rs140849564-A		4E-8		1.07	[1.05-1.10]	Affymetrix, Illumina [NR]	N
832	chr6	32490901	32490902	rs566143951	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	6p21.32		rs566143951-G	0.40612	4E-7		0.034119	[0.021-0.047] unit increase	Affymetrix [15580782] (imputed)	N
832	chr6	32492324	32492325	rs558534039	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in HDL	115,082 European ancestry individuals	NA	6p21.32		rs558534039-C	0.906014	2E-8		0.0439893	[0.029-0.059] unit increase	NR [11722792] (imputed)	N
832	chr6	32492406	32492407	rs112209031	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.32	HLA-DRB1, HLA-DRB5, HLA-DRB6	rs112209031-T		2E-8		1.09	[1.06-1.13]	Affymetrix, Illumina [NR]	N
832	chr6	32492966	32492967	rs191843781	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.32	HLA-DRB5	rs191843781-T		3E-11		1.14	[1.09-1.18]	Affymetrix, Illumina [NR]	N
832	chr6	32493245	32493246	rs145470632	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.32	HLA-DRB5	rs145470632-A		5E-10		1.12	[1.08-1.16]	Affymetrix, Illumina [NR]	N
832	chr6	32493588	32493589	rs112587821	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on CD14- CD16-	3,629 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs112587821-T	0.88289	2E-83		0.8124	[0.73-0.89] unit decrease	Illumina [18218967] (imputed)	N
832	chr6	32493891	32493892	rs147793969	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.32	HLA-DRB5	rs147793969-?		1E-9		1.1111112	[1.08-1.15]	Affymetrix, Illumina [NR]	N
832	chr6	32494096	32494097	rs189600472	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.32	HLA-DRB5	rs189600472-T		8E-11		1.12	[1.08-1.16]	Affymetrix, Illumina [NR]	N
832	chr6	32494703	32494704	rs117616320	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.32	HLA-DRB5	rs117616320-?		1E-10		1.098901	[1.06-1.12]	Affymetrix, Illumina [NR]	N
832	chr6	32495993	32495994	rs115711695	25200001	Robinson PC	2014-09-08	Arthritis Rheumatol	Genetic dissection of acute anterior uveitis reveals similarities and differences in associations observed with ankylosing spondylitis.	Acute anterior uveitis (with or without ankylosing spondylitis)	238 European ancestry primary acute anterior uveitis cases, 1,199 European ancestry cases with acute anterior uveitis and ankylosing spondylitis, 9,564 European ancestry controls	NR	6p21.32	HLA-DRB5	rs115711695-?	NR	6E-6	(conditioned on rs116488202, rs114102658, rs149567432, rs114977878)	1.7	[1.5-1.9]	Illumina [at least 106525] (imputed)	N
832	chr6	32496170	32496171	rs72508457	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	6p21.32	HLA-DRB1	rs72508457-G	NR	5E-24		1.09	[1.07-1.11]	Affymetrix [9000000] (imputed)	N
832	chr6	32496559	32496560	rs193267147	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.32	HLA-DRB5	rs193267147-?		2E-11		1.2195122	[1.15-1.28]	Affymetrix, Illumina [NR]	N
832	chr6	32497718	32497719	rs117317282	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.32	HLA-DRB5	rs117317282-T	0.03162	1E-12		0.058178984	[0.042-0.074] unit decrease	Affymetrix [93095623] (imputed)	N
832	chr6	32499273	32499274	rs114812317	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.32	HLA-DRB5, HLA-DRB6	rs114812317-?		3E-10		1.1363636	[1.09-1.18]	Affymetrix, Illumina [NR]	N
832	chr6	32500956	32500957	rs11967891	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	6p21.32	HLA-DRB5	rs11967891-A	0.816158	7E-30		0.0293508	[0.024-0.034] unit increase	Affymetrix [NR] (imputed)	N
832	chr6	32501143	32501144	rs2157337	21156761	Padyukov L	2010-12-14	Ann Rheum Dis	A genome-wide association study suggests contrasting associations in ACPA-positive versus ACPA-negative rheumatoid arthritis.	Rheumatoid arthritis	1,147 European ancestry ACPA positive RA cases, 774 European ancestry ACPA negative RA cases, 1,079 European ancestry controls	887 European ancestry ACPA positive RA cases, 1,218 European ancestry controls	6p21.32	HLA	rs2157337-?	NR	9E-52	(ACPA-positive RA vs ACPA-negative RA)			Illumina [1723056] (imputed)	N
832	chr6	32501244	32501245	rs112621731	34011352	Schwarm C	2021-05-19	Orphanet J Rare Dis	Identification of two novel bullous pemphigoid- associated alleles, HLA-DQA1*05:05 and -DRB1*07:01, in Germans.	Bullous pemphigoid	438 German cases, 417 German controls	NA	6p21.32	HLA-DRB5, HLA-DRB6	rs112621731-?	NR	6E-8		0.708733	[0.45-0.96] unit increase	Affymetrix [up to 386296] (imputed)	N
832	chr6	32501346	32501347	rs67851010	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	TCRgd T cell Absolute Count	3,650 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs67851010-A	0.77135	2E-11		0.3066	[0.22-0.4] unit increase	Illumina [18427099] (imputed)	N
832	chr6	32501392	32501393	rs72851020	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Naive CD8+ T cell Absolute Count	3,395 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs72851020-T	0.76839	4E-10		0.2077	[0.14-0.27] unit increase	Illumina [18332267] (imputed)	N
832	chr6	32501626	32501627	rs115780495	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	SSC-A on myeloid Dendritic Cell	2,872 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs115780495-G	0.20794	4E-10		0.34	[0.23-0.45] unit increase	Illumina [17926605] (imputed)	N
832	chr6	32501714	32501715	rs33997707	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	6p21.32		rs33997707-A	NR	1E-36		0.0422	[0.036-0.049] unit increase	Affymetrix, Illumina [20521447] (imputed)	N
832	chr6	32502316	32502317	rs78533241	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DRB5	rs78533241-A	NR	2E-18		0.0263079	[0.02-0.032] unit decrease	Affymetrix [323123] (imputed)	N
832	chr6	32502398	32502399	rs7747236	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6p21.32	HLA-DRB5	rs7747236-T	0.136236	2E-9		0.032500744	[0.022-0.043] unit increase	Affymetrix [93095623] (imputed)	N
832	chr6	32503203	32503204	rs68174286	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR+ T cell Absolute Count	3,580 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs68174286-T	0.3045	7E-13		0.3263	[0.24-0.41] unit increase	Illumina [18377392] (imputed)	N
832	chr6	32503840	32503841	rs541803504	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs541803504-T	0.176	4E-26	(Complement C4, C4A.C4B.4481.34.2)	0.38	[0.3-0.46] unit increase	Affymetrix [10572788] (imputed)	N
833	chr6	32507223	32507224	rs568551048	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	6p21.32	HLA-DRB5	rs568551048-A	0.412962	1E-22		0.0205075	[0.016-0.025] unit decrease	Affymetrix [NR] (imputed)	N
833	chr6	32507751	32507752	rs67382147	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Intraocular pressure	101,939 European ancestry cases	NA	6p21.32	NR	rs67382147-G		4E-8		0.11	[0.071-0.149] unit increase	NR [NR]	N
833	chr6	32508011	32508012	rs78316776	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	6p21.32	intergenic	rs78316776-T	NR	2E-6				Illumina [up to 11995908] (imputed)	N
833	chr6	32509753	32509754	rs72492309	30898391	Lawrenson K	2019-03-19	Gynecol Oncol	Genome-wide association studies identify susceptibility loci for epithelial ovarian cancer in east Asian women.	Epithelial ovarian cancer	3,238 East Asian ancestry cases, 4,083 East Asian ancestry controls	NA	6p21.32		rs72492309-?	NR	2E-6	(serous)	1.27		Illumina [11595112] (imputed)	N
833	chr6	32510201	32510202	rs182908437	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.32	intergenic	rs182908437-?		3E-11		1.1494253	[1.1-1.2]	Affymetrix, Illumina [NR]	N
833	chr6	32512047	32512048	rs28584364	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4 on naive CD4+ T cell	2,910 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs28584364-T	0.57221	1E-8		0.3238	[0.21-0.44] unit increase	Illumina [17945511] (imputed)	N
833	chr6	32512047	32512048	rs28584364	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4 on Central Memory CD4+ T cell	2,912 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs28584364-T	0.57218	3E-10		0.3333	[0.23-0.44] unit increase	Illumina [17945888] (imputed)	N
833	chr6	32512047	32512048	rs28584364	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4 on CD45RA+ CD4+ T cell	2,911 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs28584364-T	0.57219	2E-11		0.3526	[0.25-0.46] unit increase	Illumina [17945546] (imputed)	N
833	chr6	32512047	32512048	rs28584364	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4 on CD4+ T cell	2,912 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs28584364-T	0.57218	5E-12		0.3639	[0.26-0.47] unit increase	Illumina [17945888] (imputed)	N
833	chr6	32512141	32512142	rs562852671	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	RNU1-61P	rs562852671-T	NR	2E-11		0.0215915	[0.015-0.028] unit decrease	Affymetrix [323858] (imputed)	N
833	chr6	32512141	32512142	rs562852671	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	RNU1-61P	rs562852671-T	NR	2E-11		0.0216706	[0.015-0.028] unit decrease	Affymetrix [127266] (imputed)	N
833	chr6	32517044	32517045	rs111945767	26562150	Seldin MF	2015-10-10	Mol Med	Genome-wide Association Study of Late-Onset Myasthenia Gravis: Confirmation of TNFRSF11A, and Identification of ZBTB10 and Three Distinct HLA Associations.	Late-onset myasthenia gravis	532 European ancestry cases, 2,128 European ancestry controls	NA	6p21.32	MHC_Class II	rs111945767-G	0.38	3E-17		1.923077	[1.64-2.27]	Illumina [6175472] (imputed)	N
833	chr6	32518426	32518427	rs138453460	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	6p21.32		rs138453460-G	0.942891	1E-8		0.0549043	[0.036-0.074] unit increase	NR [11722792] (imputed)	N
833	chr6	32519004	32519005	rs28490179	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	RNU1-61P	rs28490179-C	NR	1E-9		0.0229135	[0.016-0.03] unit increase	Affymetrix [321016] (imputed)	N
833	chr6	32520906	32520907	rs3828840	23472185	Mero IL	2013-03-05	PLoS One	Oligoclonal band status in Scandinavian multiple sclerosis patients is associated with specific genetic risk alleles.	Multiple sclerosis (OCB status)	1,367 European ancestry OCB positive cases, 161 European ancestry OCB negative cases, 428 European ancestry controls	NA	6p21.32	HLA-DRB1	rs3828840-?	NR	5E-15	(OCB positive vs. controls)	1.94	[1.64-2.29]	Illumina [495970]	N
833	chr6	32522147	32522148	rs35467127	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DRB6	rs35467127-T	NR	1E-13		0.0263989	[0.019-0.033] unit increase	Affymetrix [319769] (imputed)	N
833	chr6	32522147	32522148	rs35467127	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DRB6	rs35467127-T	NR	2E-13		0.0262282	[0.019-0.033] unit increase	Affymetrix [319769] (imputed)	N
833	chr6	32522147	32522148	rs35467127	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DRB6	rs35467127-T	NR	1E-10		0.0232493	[0.016-0.03] unit increase	Affymetrix [321169] (imputed)	N
833	chr6	32522147	32522148	rs35467127	33549134	Adolphe C	2021-02-06	Genome Med	Genetic and functional interaction network analysis reveals global enrichment of regulatory T cell genes influencing basal cell carcinoma susceptibility.	Basal cell carcinoma	17,416 European ancestry cases, 375,455 European ancestry controls	NA	6p21.32	HLA-DRB6	rs35467127-T	0.190482	7E-12		0.09424036	[0.067-0.121] unit increase	Affymetrix [7260263] (imputed)	N
833	chr6	32524917	32524918	rs9469174	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.32	HLA-DRB1, HLA-DRB5, HLA-DRB6	rs9469174-?		3E-10		1.098901	[1.06-1.12]	Affymetrix, Illumina [NR]	N
833	chr6	32525639	32525640	rs28393149	33204752	Butler-Laporte G	2020-09-24	Open Forum Infect Dis	Genetic Determinants of Antibody-Mediated Immune Responses to Infectious Diseases Agents: A Genome-Wide and HLA Association Study.	Merkel cell polyomavirus VP1 antibody levels	5,915 White British ancestry individuals	NA	6p21.32	HLA-DRB6	rs28393149-C	0.882	1E-18		0.26	[0.20-0.32] unit decrease	NR [25472218] (imputed)	N
833	chr6	32525991	32525992	rs191239160	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.32	HLA-DRB1, HLA-DRB5, HLA-DRB6	rs191239160-?		7E-9		1.0752687	[1.05-1.1]	Affymetrix, Illumina [NR]	N
833	chr6	32526027	32526028	rs150543195	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	6p21.32		rs150543195-G	0.83532	2E-9		0.0389899	[0.026-0.052] unit increase	NR [11722792] (imputed)	N
833	chr6	32526122	32526123	rs139447342	33766948	Zhu Z	2021-03-25	Eur Respir J	A large-scale genome-wide association analysis of lung function in the Chinese population identifies novel loci and highlights shared genetic etiology with obesity.	Lung function (FVC)	100,285 Chinese ancestry individuals	NA	6p21.32		rs139447342-C	0.3	1E-9		0.032	L increase	Affymetrix [NR] (imputed)	N
833	chr6	32526774	32526775	rs112628998	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Skin reflectance (Melanin index)	720 South Asian ancestry individuals		6p21.32	NR	rs112628998-A	NR	1E-6		0.673911	[0.4-0.94] unit decrease	Affymetrix, Illumina [at least 398118] (imputed)	N
833	chr6	32527109	32527110	rs78110044	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.32	HLA-DQA1, HLA-DQB1, HLA-DRB1, HLA-DRB6	rs78110044-?		3E-14		1.2195122	[1.15-1.28]	Affymetrix, Illumina [NR]	N
833	chr6	32528413	32528414	rs72845743	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	TCRgd T cell %lymphocyte	3,666 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs72845743-A	0.36804	2E-8		0.3943	[0.26-0.53] unit increase	Illumina [18430537] (imputed)	N
833	chr6	32530197	32530198	rs35464393	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	6p21.32		rs35464393-T	0.17	2E-10				Affymetrix [10369434] (imputed)	N
833	chr6	32534230	32534231	rs374949924	33204752	Butler-Laporte G	2020-09-24	Open Forum Infect Dis	Genetic Determinants of Antibody-Mediated Immune Responses to Infectious Diseases Agents: A Genome-Wide and HLA Association Study.	Polyomavirus 2  JC VP1 antibody levels	5,118 White British ancestry individuals	NA	6p21.32	HLA-DRB6	rs374949924-G	0.198	5E-24		0.26	[0.21-0.31] unit decrease	NR [25472218] (imputed)	N
833	chr6	32534580	32534581	rs147732109	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Ulcerative colitis	314 East Asian ancestry cases, 178,375 East Asian ancestry controls	NA	6p21.32		rs147732109-A	0.119268296	2E-16		1.256198	[0.96-1.56] unit increase	Illumina [13429945] (imputed)	N
833	chr6	32534587	32534588	rs116180191	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs116180191-A	0.366	3E-12	(Complement C4, C4A.C4B.4481.34.2)	0.19	[0.13-0.25] unit decrease	Affymetrix [10572788] (imputed)	N
833	chr6	32534643	32534644	rs147976543	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.32	HLA-DRB1, HLA-DRB6	rs147976543-A		4E-11		1.1	[1.07-1.13]	Affymetrix, Illumina [NR]	N
833	chr6	32535636	32535637	rs79019614	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	118,886 East Asian ancestry individuals	NA	6p21.32		rs79019614-A	0.098187	1E-11		0.0513157	[0.036-0.066] unit increase	Illumina [13474352] (imputed)	N
833	chr6	32536500	32536501	rs185717927	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.32	intergenic	rs185717927-C		7E-13		1.23	[1.16-1.31]	Affymetrix, Illumina [NR]	N
833	chr6	32536793	32536794	rs573988888	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	6p21.32		rs573988888-G	0.00312299999999999	4E-9		0.13276471	[0.088-0.177] unit increase	Affymetrix [93095623] (imputed)	N
833	chr6	32536793	32536794	rs573988888	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	6p21.32		rs573988888-G	0.00312500000000004	4E-14		0.16856486	[0.12-0.21] unit decrease	Affymetrix [93095623] (imputed)	N
833	chr6	32537710	32537711	rs112463084	34532061	Hodel F	2021-06-11	Virus Evol	Human genomics of the humoral immune response against polyomaviruses.	JC polyomavirus VP1 antibody levels	8,567 European ancestry individuals	NA	6p21.32		rs112463084-?	NR	2E-20				Affymetrix [NR] (imputed)	N
833	chr6	32537884	32537886	rs200841208	34601942	van Zuydam NR	2021-10-04	Circ Genom Precis Med	Genome-Wide Association Study of Peripheral Artery Disease.	Peripheral artery disease in ever smokers	7,404 Finnish ancestry cases, 205,693 Finnish ancestry controls, 7,404 non-Scandinavian ancestry cases, 205,693 non-Scandinavian ancestry controls, 7,404 British ancestry cases, 205,693 British ancestry controls	NA	6p21.32		rs200841208-T	0.3	4E-8		1.35	[1.18-1.55]	Affymetrix, Illumina [NR] (imputed)	N
833	chr6	32538475	32538476	rs111639056	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.32	HLA-DQA1, HLA-DRA, HLA-DRB1, HLA-DRB5, HLA-DRB6	rs111639056-?		2E-15		1.1494253	[1.11-1.19]	Affymetrix, Illumina [NR]	N
833	chr6	32538502	32538503	rs3819692	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	6p21.32		rs3819692-A	0.588296	4E-9		0.0276799	[0.018-0.037] unit increase	NR [11722792] (imputed)	N
833	chr6	32539106	32539107	rs9269271	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.32	HLA-DRA, HLA-DRB1, HLA-DRB5, HLA-DRB6	rs9269271-T		4E-15		1.11	[1.08-1.14]	Affymetrix, Illumina [NR]	N
833	chr6	32539110	32539111	rs139088362	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	6p21.32	HLA-DRB6	rs139088362-A	NR	4E-12		1.185	[1.14-1.23]	Affymetrix [9000000] (imputed)	N
833	chr6	32540851	32540852	rs576084184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-3 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	6p21.32		rs576084184-C	0.879346	4E-8		0.0410099	[0.026-0.056] unit decrease	NR [11722792] (imputed)	N
833	chr6	32541218	32541219	rs75380949	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	6p21.32	HLA-DRB6	rs75380949-T	NR	4E-33		1.208	[1.18-1.24]	Affymetrix [9000000] (imputed)	N
833	chr6	32542012	32542013	rs41293330	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.32	HLA-DRB1, HLA-DRB5, HLA-DRB6	rs41293330-T		2E-9		1.09	[1.06-1.12]	Affymetrix, Illumina [NR]	N
833	chr6	32543044	32543045	rs115231074	26450422	DeLorenze GN	2015-10-08	J Infect Dis	Polymorphisms in HLA Class II Genes Are Associated With Susceptibility to Staphylococcus aureus Infection in a White Population.	Staphylococcus aureus infection	4,701 European ancestry cases, 45,344 European ancestry controls	NA	6p21.32	HLA-DRB1	rs115231074-T	NR	1E-10		1.22	[NR]	Affymetrix [at least 584535] (imputed)	N
833	chr6	32543044	32543045	rs115231074	26450422	DeLorenze GN	2015-10-08	J Infect Dis	Polymorphisms in HLA Class II Genes Are Associated With Susceptibility to Staphylococcus aureus Infection in a White Population.	Skin and soft tissue Staphylococcus aureus infection	2,130 European ancestry cases, 45,434 European ancestry controls	NA	6p21.32	HLA-DRB1	rs115231074-T	NR	5E-8		1.28	[NR]	Affymetrix [at least 584535] (imputed)	N
833	chr6	32543297	32543298	rs9269511	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p21.32		rs9269511-C	0.158	1E-16				Affymetrix [10369434] (imputed)	N
833	chr6	32543574	32543575	rs41294271	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.32	HLA-DRB1	rs41294271-?		3E-8		1.1111112	[1.06-1.15]	Affymetrix, Illumina [NR]	N
833	chr6	32544120	32544121	rs115468973	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	6p21.32	HLA-DRB6	rs115468973-T	NR	3E-23		1.267	[1.22-1.31]	Affymetrix [9000000] (imputed)	N
833	chr6	32544696	32544697	rs9269573	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs9269573-A	0.861	6E-29	(GDH/6PGL endoplasmic bifunctional protein, H6PD.7161.25.3)	0.39	[0.31-0.47] unit decrease	Affymetrix [10572788] (imputed)	N
833	chr6	32545391	32545392	rs35511257	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	6p21.32	HLA-DRB1	rs35511257-C	0.0956	7E-10		0.003	[0.002-0.004] unit decrease	Affymetrix [15275733] (imputed)	N
833	chr6	32545396	32545397	rs34363414	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs34363414-T	0.15	4E-27	(Ubiquitin carboxyl-terminal hydrolase 25, USP25.9215.117.3)	0.39	[0.31-0.47] unit increase	Affymetrix [10572788] (imputed)	N
833	chr6	32545396	32545397	rs34363414	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs34363414-T	0.15	1E-33	(Complement C4, C4A.C4B.4481.34.2)	0.43	[0.35-0.51] unit increase	Affymetrix [10572788] (imputed)	N
833	chr6	32546665	32546666	rs1064713	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	6p21.32	HLA-DRB6	rs1064713-A	NR	1E-25		1.205	[1.17-1.24]	Affymetrix [9000000] (imputed)	N
833	chr6	32547193	32547194	rs9256938	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs9256938-A	0.737	2E-12	(Complement factor B, CFB.4129.72.1)	0.23	[0.17-0.29] unit increase	Affymetrix [10572788] (imputed)	N
833	chr6	32548549	32548550	rs1059362	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs1059362-A	0.17	7E-35	(Complement C4, C4A.C4B.4481.34.2)	0.45	[0.37-0.53] unit increase	Affymetrix [10572788] (imputed)	N
833	chr6	32548733	32548734	rs9269771	33204752	Butler-Laporte G	2020-09-24	Open Forum Infect Dis	Genetic Determinants of Antibody-Mediated Immune Responses to Infectious Diseases Agents: A Genome-Wide and HLA Association Study.	Anti-Merkel cell polyomavirus IgG seropositivity	8,735 White British ancestry individuals	NA	6p21.32	HLA-DRB1	rs9269771-T	0.252	7E-37		0.12	[0.10-0.14] unit decrease	NR [25472218] (imputed)	N
833	chr6	32548920	32548921	rs149717632	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Antisaccade task score	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	6p21.32	HLA-DRB1	rs149717632-G	NR	3E-6		0.15448512	[0.094-0.215] unit decrease	Illumina [> 6200000] (imputed)	N
833	chr6	32549500	32549501	rs707954	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6p21.32	NR	rs707954-A	0.3039	1E-13		1.062	[1.046-1.078]	Affymetrix [15688218] (imputed)	N
833	chr6	32549530	32549531	rs112796209	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	6p21.32	NR	rs112796209-?	NR	1E-10				Affymetrix [~ 8270000] (imputed)	N
833	chr6	32549877	32549878	rs41293179	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.32	HLA-DRB1, HLA-DRB5, HLA-DRB6	rs41293179-?		2E-11		1.1111112	[1.08-1.14]	Affymetrix, Illumina [NR]	N
833	chr6	32549913	32549914	rs142790902	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.32	HLA-DRB1	rs142790902-T		1E-11		1.22	[1.15-1.29]	Affymetrix, Illumina [NR]	N
833	chr6	32550125	32550126	rs35789108	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs35789108-?	NR	2E-23				Affymetrix [~ 8270000] (imputed)	N
833	chr6	32550321	32550322	rs9269853	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease (late onset)	24,087 European ancestry cases, 55,058 European ancestry controls	NA	6p21.32	HLA-DRB1	rs9269853-A	NR	3E-8		5.5623274	NR z-score increase	Illumina [up to 9862738] (imputed)	N
833	chr6	32551702	32551703	rs144660248	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.32	HLA-DRB1, HLA-DRB5, HLA-DRB6	rs144660248-?		6E-13		1.1764705	[1.12-1.23]	Affymetrix, Illumina [NR]	N
833	chr6	32552066	32552067	rs17882603	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	6p21.32	NR	rs17882603-T	0.465812	3E-11		0.0493398	[0.035-0.064] unit decrease	Affymetrix [17914406] (imputed)	N
833	chr6	32552094	32552095	rs17885382	25987655	Fernandez CA	2015-05-18	Blood	Genome-wide analysis links NFATC2 with asparaginase hypersensitivity.	Asparaginase hypersensitivity in acute lymphoblastic leukemia	3,126 child cases	182 child cases	6p21.32	HLA-DRB1	rs17885382-T		3E-6		1.627		Affymetrix [NR]	N
833	chr6	32552447	32552448	rs11753207	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.32	HLA-DRB1, HLA-DRB5, HLA-DRB6	rs11753207-A		3E-11		1.1	[1.07-1.13]	Affymetrix, Illumina [NR]	N
833	chr6	32552739	32552740	rs9270000	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total concentration of lipoprotein particles	115,082 European ancestry individuals	NA	6p21.32		rs9270000-G	0.57364	1E-11		0.030461	[0.022-0.039] unit decrease	NR [11722792] (imputed)	N
833	chr6	32552739	32552740	rs9270000	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small HDL particles	115,082 European ancestry individuals	NA	6p21.32		rs9270000-G	0.57364	2E-17		0.0405784	[0.031-0.05] unit decrease	NR [11722792] (imputed)	N
833	chr6	32552739	32552740	rs9270000	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small HDL	115,082 European ancestry individuals	NA	6p21.32		rs9270000-G	0.57364	2E-14		0.0365295	[0.027-0.046] unit decrease	NR [11722792] (imputed)	N
833	chr6	32552739	32552740	rs9270000	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small HDL	115,082 European ancestry individuals	NA	6p21.32		rs9270000-G	0.57364	4E-16		0.0387141	[0.029-0.048] unit decrease	NR [11722792] (imputed)	N
833	chr6	32554078	32554079	rs545366210	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	6p21.32	HLA-DRB1	rs545366210-C	NR	2E-29		1.316	[1.27-1.36]	Affymetrix [9000000] (imputed)	N
833	chr6	32554128	32554129	rs9270074	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.32	HLA-DRB1	rs9270074-T		1E-9		1.08	[1.05-1.11]	Affymetrix, Illumina [NR]	N
833	chr6	32554403	32554404	rs34084957	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs34084957-?	NR	3E-12				Affymetrix [~ 8270000] (imputed)	N
833	chr6	32554444	32554445	rs9270094	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.32		rs9270094-G	0.161	4E-24				Affymetrix [10369434] (imputed)	N
833	chr6	32554701	32554702	rs4377812	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	6p21.32	HLA-DRB1	rs4377812-T	0.9244	1E-17		0.0409	[0.031-0.05] unit decrease	Affymetrix [18391927] (imputed)	N
833	chr6	32554934	32554935	rs34075049	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Neurofibrillary tangles	up to 4,707 individuals	NA	6p21.32	HLA-DRB1	rs34075049-A	0.0522	9E-6	(Ordinal I)	0.5887	[0.33-0.85] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
833	chr6	32555050	32555051	rs34563311	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)(bidirectional)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs34563311-C	NR	1E-16				Affymetrix [7846216] (imputed)	N
833	chr6	32555230	32555231	rs28724141	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	163,835 East Asian ancestry individuals	NA	6p21.32		rs28724141-T	0.303975	4E-12		0.0271268	[0.019-0.035] unit decrease	Illumina [13479178] (imputed)	N
833	chr6	32555793	32555794	rs33941037	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR+ T cell%lymphocyte	3,596 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs33941037-C	0.19665	5E-10		0.2459	[0.17-0.32] unit increase	Illumina [18380873] (imputed)	N
833	chr6	32555793	32555794	rs33941037	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR+ CD8+ T cell %lymphocyte	3,595 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs33941037-C	0.1967	6E-13		0.288	[0.21-0.37] unit increase	Illumina [18380839] (imputed)	N
833	chr6	32555934	32555935	rs9270186	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6p21.32	HLA-DRB1	rs9270186-G	0.135629	2E-12		0.027586257	[0.02-0.035] unit increase	Affymetrix [93095623] (imputed)	N
833	chr6	32555961	32555962	rs112240819	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	111,667 East Asian ancestry individuals	NA	6p21.32		rs112240819-C	0.101941	5E-21		0.0719652	[0.057-0.087] unit increase	Illumina [13471903] (imputed)	N
833	chr6	32556600	32556601	rs28724212	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.32	HLA-DRB1	rs28724212-A		1E-9		1.14	[1.09-1.19]	Affymetrix, Illumina [NR]	N
833	chr6	32558070	32558071	rs9270355	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	6p21.32		rs9270355-A	0.332711	2E-8		0.0265854	[0.017-0.036] unit increase	NR [11722792] (imputed)	N
833	chr6	32558070	32558071	rs9270355	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	21,347 Hispanic or Latin American individuals	NA	6p21.32		rs9270355-A	0.6119	2E-7		0.059	[0.037-0.081] unit increase	Affymetrix, Illumina [NR] (imputed)	N
833	chr6	32558189	32558190	rs9270371	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs9270371-T	0.306	4E-6		0.886	[0.84-0.94]	Illumina [11270530] (imputed)	N
833	chr6	32558427	32558428	rs184318723	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	6p21.32	HLA-DRB1	rs184318723-C	0.0466	3E-21		0.062	[0.049-0.075] unit increase	Affymetrix [18391927] (imputed)	N
833	chr6	32558427	32558428	rs184318723	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Diastolic blood pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	6p21.32	HLA	rs184318723-C	0.044778943	3E-6		0.4466	[0.26-0.63] unit decrease	Affymetrix [~ 9800000] (imputed)	N
833	chr6	32559006	32559007	rs9270475	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	6p21.32	HLA-DRB1	rs9270475-T	0.247105	2E-11		0.021426495	[0.015-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
833	chr6	32559006	32559007	rs9270475	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	6p21.32	HLA-DRB1	rs9270475-T	0.247094	2E-31		0.031489685	[0.026-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
833	chr6	32559006	32559007	rs9270475	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	6p21.32	HLA-DRB1	rs9270475-T	0.247112	8E-33		0.031753708	[0.027-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
833	chr6	32559109	32559110	rs9270493	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	6p21.32	HLA-DRB1	rs9270493-C	0.2259	1E-46		0.06149481	[0.053-0.07] unit decrease	Affymetrix [~ 2500000] (imputed)	N
833	chr6	32559158	32559159	rs113399573	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs113399573-T	0.269	1E-20	(Complement C4, C4A.C4B.4481.34.2)	0.28	[0.22-0.34] unit increase	Affymetrix [10572788] (imputed)	N
833	chr6	32559283	32559284	rs114258010	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs114258010-A	0.91644	8E-9		0.0436904	[0.029-0.059] unit decrease	NR [11722792] (imputed)	N
833	chr6	32559283	32559284	rs114258010	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	6p21.32		rs114258010-A	0.91644	4E-9		0.0445418	[0.03-0.059] unit increase	NR [11722792] (imputed)	N
833	chr6	32559481	32559482	rs28366255	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs28366255-T	0.284	1E-14	(Complement C4, C4A.C4B.4481.34.2)	0.24	[0.18-0.3] unit increase	Affymetrix [10572788] (imputed)	N
833	chr6	32559672	32559673	rs34434863	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	6p21.32		rs34434863-G	NR	2E-30		0.0254	[0.021-0.03] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
833	chr6	32559752	32559753	rs28366266	29903748	Debiec H	2018-06-14	J Am Soc Nephrol	Transethnic, Genome-Wide Analysis Reveals Immune-Related Risk Alleles and Phenotypic Correlates in Pediatric Steroid-Sensitive Nephrotic Syndrome.	Childhood steroid-sensitive nephrotic syndrome	244 European ancestry cases, 2,552 European ancestry controls, 56 African cases, 454 African controls, 85 Maghrebian cases, 261 Maghrebian controls	NA	6p21.32	HLA-DRB1	rs28366266-C	0.17	4E-20		3.03	[2.40-3.85]	Illumina [at least 7529344] (imputed)	N
833	chr6	32559752	32559753	rs28366266	29903748	Debiec H	2018-06-14	J Am Soc Nephrol	Transethnic, Genome-Wide Analysis Reveals Immune-Related Risk Alleles and Phenotypic Correlates in Pediatric Steroid-Sensitive Nephrotic Syndrome.	Childhood steroid-sensitive nephrotic syndrome	132 European ancestry cases, 2,000 European ancestry controls	NA	6p21.32	HLA-DRB1	rs28366266-?	0.17	6E-6		2.25	[1.59-3.2]	Illumina [at least 7529344] (imputed)	N
833	chr6	32559763	32559764	rs9270539	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	Systemic lupus erythematosus	1,639 East Asian ancestry cases, 2,410 East Asian ancestry controls	NA			rs9270539-C	NR	4E-36		0.5741	[0.48-0.66] unit decrease	Illumina [NR] (imputed)	N
833	chr6	32560282	32560283	rs28366282	33766948	Zhu Z	2021-03-25	Eur Respir J	A large-scale genome-wide association analysis of lung function in the Chinese population identifies novel loci and highlights shared genetic etiology with obesity.	Lung function (FVC)	100,285 Chinese ancestry individuals	NA	6p21.32		rs28366282-C	0.76	3E-11		0.035	[0.025-0.045] L increase	Affymetrix [NR] (imputed)	N
833	chr6	32560476	32560477	rs34415150	33510174	Jones G	2021-01-28	Nat Commun	Genome-wide meta-analysis of muscle weakness identifies 15 susceptibility loci in older men and women.	Low hand grip strength (60 years and older) (FNIH)	20,335 European ancestry cases, 236,188 European ancestry controls	NA	6p21.32	HLA-DRB1	rs34415150-G	0.18	6E-16		0.1158	unit increase	Affymetrix, Illumina [9465622] (imputed)	N
833	chr6	32560476	32560477	rs34415150	33510174	Jones G	2021-01-28	Nat Commun	Genome-wide meta-analysis of muscle weakness identifies 15 susceptibility loci in older men and women.	Low hand grip strength (60 years and older) (EWGSOP)	48,596 European ancestry cases, 207,927 European ancestry controls	NA	6p21.32	HLA-DRB1	rs34415150-A	0.822	4E-17		0.0833	[0.064-0.103] unit decrease	Affymetrix, Illumina [9457422] (imputed)	N
833	chr6	32560476	32560477	rs34415150	33510174	Jones G	2021-01-28	Nat Commun	Genome-wide meta-analysis of muscle weakness identifies 15 susceptibility loci in older men and women.	Low hand grip strength (60 years and older) (EWGSOP)	34,589 European ancestry female cases, 100,879 European ancestry female controls	NA	6p21.32	HLA-DRB1	rs34415150-G	0.18	1E-16		0.1001	unit increase	Affymetrix, Illumina [9449805] (imputed)	N
833	chr6	32560476	32560477	rs34415150	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	6p21.32	NR	rs34415150-A	0.815874	2E-52		0.0399601	[0.035-0.045] unit decrease	NR [NR]	N
833	chr6	32560630	32560631	rs35118762	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (immunosuppressants)	3,954 European ancestry cases, 268,648 European ancestry controls, 3,483 East Asian ancestry cases, 175,243 East Asian ancestry controls	NA	6p21.32		rs35118762-T	NR	1E-120		0.4878	[0.45-0.53] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
833	chr6	32560751	32560752	rs7768875	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on IgD+ CD38+ B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs7768875-T	0.47719	3E-8		0.1706	[0.11-0.23] unit decrease	Illumina [18238311] (imputed)	N
833	chr6	32560770	32560771	rs2760975	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	6p21.32	HLA-DRB1	rs2760975-A	0.168	5E-12		0.003	[0.0022-0.0038] unit decrease	Affymetrix [15275733] (imputed)	N
833	chr6	32560770	32560771	rs2760975	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	223,215 British ancestry individuals	111,610 British ancestry individuals	6p21.32	HLA-DRB1	rs2760975-A	0.17	1E-9		0.003	[0.002-0.004] unit decrease	Affymetrix [15275733] (imputed)	N
833	chr6	32560828	32560829	rs28366297	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	6p21.32		rs28366297-C	0.30822	1E-6		0.035757	[0.021-0.05] unit increase	Affymetrix [15580782] (imputed)	N
833	chr6	32560869	32560870	rs28366299	33143745	Andlauer TFM	2020-11-04	BMC Med	Treatment- and population-specific genetic risk factors for anti-drug antibodies against interferon-beta: a GWAS.	Neutralising antibody response to interferon beta therapy in multiple sclerosis (presence of antibodies; IFN?-1b subcutaneous)	up to 2,000 German and Swedish ancestry individuals	up to 757 German and Swedish ancestry individuals	6p21.32		rs28366299-A	0.19	7E-19		1.27	[1.0-1.54] unit increase	Illumina [8550834] (imputed)	N
833	chr6	32560882	32560883	rs28366301	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	High density lipoprotein cholesterol levels	70,657 Japanese ancestry individuals	NA	6p21.32	HLA-DRB1, HLA-DQA1	rs28366301-?	NR	8E-11		0.03687	[0.026-0.048] unit increase novel	Illumina [6108953] (imputed)	N
833	chr6	32561067	32561068	rs9270576	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	78,744 East Asian ancestry individuals	NA	6p21.32	NR	rs9270576-C	0.620915	3E-28		0.071855	[0.059-0.085] SD units increase	Affymetrix, Illumina [16289093] (imputed)	N
833	chr6	32561282	32561283	rs35525122	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on myeloid Dendritic Cell	2,872 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs35525122-A	0.10869	1E-65		0.8525	[0.76-0.95] unit increase	Illumina [17926605] (imputed)	N
833	chr6	32561299	32561300	rs9270585	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on CD14+ monocyte	3,629 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9270585-T	0.5757300000000001	6E-92		0.5871	[0.53-0.64] unit decrease	Illumina [18218967] (imputed)	N
833	chr6	32561299	32561300	rs9270585	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on CD14+ CD16- monocyte	3,629 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9270585-T	0.5757300000000001	3E-98		0.6054	[0.55-0.66] unit decrease	Illumina [18218967] (imputed)	N
833	chr6	32561326	32561327	rs9270588	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on monocyte	3,629 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9270588-T	0.5771	3E-78		0.5388	[0.48-0.59] unit decrease	Illumina [18218967] (imputed)	N
833	chr6	32561326	32561327	rs9270588	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on CD33+ HLA DR+ CD14dim	1,578 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9270588-T	0.43503	8E-26		0.4302	[0.35-0.51] unit decrease	Illumina [16958370] (imputed)	N
833	chr6	32561326	32561327	rs9270588	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on CD33+ HLA DR+ CD14-	1,579 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9270588-T	0.43507	2E-49		0.5992	[0.52-0.68] unit decrease	Illumina [16961968] (imputed)	N
833	chr6	32561369	32561370	rs35139284	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Rheumatoid arthritis	8,255 European ancestry cases, 409,001 European ancestry controls, 5,348 East Asian ancestry cases, 173,268 East Asian ancestry controls	NA	6p21.32		rs35139284-T	NR	4E-287		0.5387	[0.51-0.57] unit increase	Affymetrix, Illumina [25835038] (imputed)	N
833	chr6	32561369	32561370	rs35139284	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DRB1	rs35139284-T	NR	4E-17		0.0253723	[0.019-0.031] unit increase	Affymetrix [319769] (imputed)	N
833	chr6	32561369	32561370	rs35139284	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DRB1	rs35139284-T	NR	8E-11		0.0218487	[0.015-0.028] unit increase	Affymetrix [323858] (imputed)	N
833	chr6	32561369	32561370	rs35139284	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DRB1	rs35139284-T	NR	1E-16		0.0250062	[0.019-0.031] unit increase	Affymetrix [319769] (imputed)	N
833	chr6	32561369	32561370	rs35139284	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	HLA-DRB1	rs35139284-T	NR	4E-10		0.0210099	[0.014-0.028] unit increase	Affymetrix [127266] (imputed)	N
833	chr6	32561369	32561370	rs35139284	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	HLA-DRB1	rs35139284-T	NR	1E-8		0.0174619	[0.011-0.023] unit increase	Affymetrix [321114] (imputed)	N
833	chr6	32561369	32561370	rs35139284	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DRB1	rs35139284-T	NR	5E-16		0.0247016	[0.019-0.031] unit increase	Affymetrix [321169] (imputed)	N
833	chr6	32561369	32561370	rs35139284	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	6p21.32	HLA-DRB1, HLA-DQA1	rs35139284-T	0.32	7E-23		9.85	z-score increase	Affymetrix [4311822] (imputed)	N
833	chr6	32561369	32561370	rs35139284	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on B cell	3,660 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs35139284-T	0.40599	4E-10		0.183	[0.13-0.24] unit increase	Illumina [18238700] (imputed)	N
833	chr6	32561374	32561375	rs201291779	34108613	Ivarsdottir EV	2021-06-09	Commun Biol	The genetic architecture of age-related hearing impairment revealed by genome-wide association analysis.	Age-related hearing impairment	121,934 European ancestry cases, 591,699 European ancestry controls	NA	6p21.32	HLA-DRB1	rs201291779-T	1.58	5E-14	(additive)	1.15	[NR]	Affymetrix, Illumina [46900000] (imputed)	N
833	chr6	32561423	32561424	rs9270591	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Monocytic Myeloid-Derived Suppressor Cells Absolute Count	1,855 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9270591-T	0.43396	5E-26		0.4161	[0.34-0.49] unit increase	Illumina [17197940] (imputed)	N
833	chr6	32561423	32561424	rs9270591	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR++ monocyte %leukocyte	3,595 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9270591-T	0.5705100000000001	7E-18		0.2715	[0.21-0.33] unit decrease	Illumina [18380843] (imputed)	N
833	chr6	32561423	32561424	rs9270591	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on Hematopoietic Stem Cell	1,634 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9270591-T	0.43702	3E-48		0.5658	[0.49-0.64] unit decrease	Illumina [16999215] (imputed)	N
833	chr6	32561655	32561656	rs9270599	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on B cell	3,060 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9270599-A	0.62618	3E-65		0.5573	[0.49-0.62] unit increase	Illumina [18012789] (imputed)	N
833	chr6	32564913	32564914	rs28366348	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	6p21.32		rs28366348-A	0.728713	1E-9		0.0290399	[0.02-0.038] unit increase	NR [11722792] (imputed)	N
833	chr6	32564984	32564985	rs35372932	35023831	Chong M	2022-01-13	Elife	GWAS and ExWAS of blood Mitochondrial DNA copy number identifies 71 loci and highlights a potential causal role in dementia.	Mitochondrial DNA copy number	395,718 British, Irish, Other White, South Asian, African ancestry individuals	NA	6p21.32	NR	rs35372932-T	0.170327	4E-9		0.0251	[0.017-0.034] unit decrease	Affymetrix [23037915] (imputed)	N
833	chr6	32565137	32565138	rs28366357	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DRB1	rs28366357-T	NR	4E-11		0.0208439	[0.015-0.027] unit decrease	Affymetrix [323123] (imputed)	N
833	chr6	32565200	32565201	rs2760980	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on CD33- HLA DR+	1,635 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs2760980-A	0.10748	2E-60		1.049	[0.93-1.17] unit increase	Illumina [16999305] (imputed)	N
833	chr6	32565212	32565213	rs28366362	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.32		rs28366362-C	0.409768	4E-26		0.029002981	[0.024-0.034] unit increase	Affymetrix [93095623] (imputed)	N
833	chr6	32565464	32565465	rs2760981	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.32	BTNL2, C6orf10, HCG23, HLA-DQA1, HLA-DRA, HLA-DRB1, HLA-DRB5, HLA-DRB6	rs2760981-?		4E-11		1.0752687	[1.05-1.1]	Affymetrix, Illumina [NR]	N
833	chr6	32565532	32565533	rs9270632	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.32		rs9270632-G	0.676	3E-48				Affymetrix [10369434] (imputed)	N
833	chr6	32565649	32565650	rs9270637	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs9270637-G	0.293	9E-20	(Complement C4, C4A.C4B.4481.34.2)	0.24	[0.18-0.3] unit decrease	Affymetrix [10572788] (imputed)	N
833	chr6	32565651	32565652	rs28383169	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	6p21.32		rs28383169-G	0.44037	4E-19		0.0246375	[0.019-0.03] unit decrease	Illumina [13479924] (imputed)	N
833	chr6	32565765	32565766	rs117726495	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs affecting bone structure and mineralization)	7,870 European ancestry cases, 207,798 European ancestry controls, 6,143 East Asian ancestry cases, 172,583 East Asian ancestry controls	NA	6p21.32		rs117726495-A	NR	8E-16		0.2102	[0.16-0.26] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
833	chr6	32565804	32565805	rs9270647	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DRB1	rs9270647-C	NR	9E-12		0.0207928	[0.015-0.027] unit decrease	Affymetrix [319769] (imputed)	N
833	chr6	32565804	32565805	rs9270647	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DRB1	rs9270647-C	NR	2E-12		0.0216513	[0.016-0.028] unit decrease	Affymetrix [321169] (imputed)	N
833	chr6	32565807	32565808	rs9270649	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DRB1	rs9270649-A	NR	2E-11		0.0205577	[0.015-0.027] unit decrease	Affymetrix [319769] (imputed)	N
833	chr6	32566095	32566096	rs2647078	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs2647078-C	0.806	9E-21		0.803	[0.76-0.85]	Illumina [11270530] (imputed)	N
833	chr6	32566576	32566577	rs4329147	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	6p21.32	HLA-DRB1	rs4329147-T	0.83	1E-11		1.11	[1.09-1.13]	Illumina [at least 560000] (imputed)	N
833	chr6	32566576	32566577	rs4329147	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	6p21.32	HLA-DRB5, HLA-DQA1	rs4329147-?	NR	1E-11		1.111	[1.078-1.146]	Illumina [13754664] (imputed)	N
833	chr6	32567255	32567256	rs687308	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (immunosuppressants)	3,954 European ancestry cases, 268,648 European ancestry controls	NA	6p21.32	HLA-DRB1	rs687308-T	0.191895	2E-84		0.5610923	[0.5-0.62] unit increase	Affymetrix [7288503] (imputed)	N
833	chr6	32568138	32568139	rs7450706	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	6p21.32		rs7450706-T	0.046397	4E-13		0.040589344	[0.03-0.052] unit decrease	Affymetrix [93095623] (imputed)	N
833	chr6	32568291	32568292	rs9270747	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)(bidirectional)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs9270747-A	NR	2E-32				Affymetrix [7846216] (imputed)	N
833	chr6	32568345	32568346	rs9270750	26956414	Berndt SI	2016-03-09	Nat Commun	Meta-analysis of genome-wide association studies discovers multiple loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	3,100 European ancestry cases, 7,667 European ancestry controls	1,958 cases,  5,530 controls	6p21.32	HLA-DQB1, HLA-DRB1, HLA-DRB5	rs9270750-A	0.543	6E-16		1.32	[1.23-1.41]	Affymetrix, Illumina [~ 8500000] (imputed)	N
833	chr6	32569055	32569056	rs9270779	29769521	Ramirez J	2018-05-16	Nat Commun	Thirty loci identified for heart rate response to exercise and recovery implicate autonomic nervous system.	Heart rate response to exercise	up to 35,455 European ancestry females, up to 31,802 European ancestry males	NA	6p21.32	HLA-DRB5, HLA-DRB1	rs9270779-T	0.323	1E-8	(females)	0.538	[0.35-0.72] bpm decrease	Affymetrix [~ 7800000] (imputed)	N
833	chr6	32569304	32569305	rs9270798	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DRB1	rs9270798-A	NR	2E-8		0.0191935	[0.013-0.026] unit decrease	Affymetrix [319769] (imputed)	N
833	chr6	32569453	32569454	rs140177540	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p21.32	HLA-DRB1	rs140177540-?	0.47	5E-15		1.06	[1.05-1.07]	Illumina [at least 560000] (imputed)	N
833	chr6	32569690	32569691	rs477515	25817017	Carmona FD	2015-03-26	Am J Hum Genet	A large-scale genetic analysis reveals a strong contribution of the HLA class II region to giant cell arteritis susceptibility.	Giant cell arteritis	1,651 European ancestry cases, 15,306 European ancestry controls	NA	6p21.32	HLA-DRB1, HLA-DQA1	rs477515-?		4E-40		1.73	[1.59-1.87]	Illumina [95416]	N
833	chr6	32569690	32569691	rs477515	24282030	Pan L	2013-11-28	Hum Mol Genet	A genome-wide association study identifies polymorphisms in the HLA-DR region associated with non-response to hepatitis B vaccination in Chinese Han populations.	Hepatitis B vaccine response	108 Han Chinese ancestry high-responder cases, 77 Han Chinese ancestry non-responder controls	1,336 Han Chinese ancestry high-responder cases, 420 Han Chinese ancestry non-responder controls	6p21.32	HLA-DRA, BTNL2, HLA-DRB1, C6orf10	rs477515-T	0.442	3E-19		2.05	[1.75-2.41]	Illumina [588026]	N
833	chr6	32569690	32569691	rs477515	23326239	Rubicz R	2013-01-10	PLoS Genet	A genome-wide integrative genomic study localizes genetic factors influencing antibodies against Epstein-Barr virus nuclear antigen 1 (EBNA-1).	Epstein-Barr virus immune response (EBNA-1)	1,367 Mexican American indivduals	589 Mexican American indivduals	6p21.32	HLA-DRB1	rs477515-T	0.32	3E-13	(Quantitative)	0.28	[NR] unit decrease	Illumina [944565]	N
833	chr6	32569690	32569691	rs477515	18758464	Kugathasan S	2008-08-31	Nat Genet	Loci on 20q13 and 21q22 are associated with pediatric-onset inflammatory bowel disease.	Inflammatory bowel disease	1,011 European ancestry cases, 4,250 European ancestry controls	1,922 European ancestry cases, 14,124 European ancestry controls	6p21.32	HLA-DQA1	rs477515-?	0.69	1E-8		1.38	[1.23-1.54]	Illumina [NR]	N
833	chr6	32569931	32569932	rs116763083	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	HLA-DRB1	rs116763083-A	0.026	4E-16	(C-C motif chemokine 19, CCL19.4922.13.1)	0.63	[0.47-0.79] unit increase	Affymetrix [10572788] (imputed)	N
833	chr6	32570310	32570311	rs34039593	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on plasmacytoid Dendritic Cell	2,872 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs34039593-G	0.11165	6E-146		1.217	[1.13-1.3] unit increase	Illumina [17926607] (imputed)	N
833	chr6	32570310	32570311	rs34039593	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on Dendritic Cell	2,871 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs34039593-G	0.11169	4E-110		1.075	[0.98-1.17] unit increase	Illumina [17926566] (imputed)	N
833	chr6	32570310	32570311	rs34039593	29534301	Nishida N	2018-03-13	Hepatology	Key HLA-DRB1-DQB1 haplotypes and role of the BTNL2 gene for response to a hepatitis B vaccine.	Response to hepatitis B vaccine	107 Japanese ancestry low responder individuals, 351 Japanese ancestry intermediate responder individuals, 735 Japanese ancestry high responder individuals	NA	6p21.32	HLA-DQA1	rs34039593-?		6E-12		0.2	unit increase	Affymetrix [427664]	N
833	chr6	32570399	32570400	rs2516049	31596875	Traylor M	2019-10-09	PLoS One	Genetic associations with radiological damage in rheumatoid arthritis: Meta-analysis of seven genome-wide association studies of 2,775 cases.	Joint damage in rheumatoid arthritis	2,527 European ancestry individuals	NA	6p21.32	intergenic	rs2516049-?	NR	3E-6	(adjusted for rheumatoid factor)			Affymetrix, Illumina [2723488] (imputed)	N
833	chr6	32570399	32570400	rs2516049	31375628	Tengvall K	2019-08-02	Proc Natl Acad Sci U S A	Molecular mimicry between Anoctamin 2 and Epstein-Barr virus nuclear antigen 1 associates with multiple sclerosis risk.	Anti-anoctamin 2 antibody levels	11,936 European ancestry individuals	NA	6p21.32	NR	rs2516049-G	NR	7E-15		0.092	[0.065-0.119] unit decrease	Illumina [615763]	N
833	chr6	32570399	32570400	rs2516049	26819262	Zhou Y	2016-01-27	Mult Scler	Genetic loci for Epstein-Barr virus nuclear antigen-1 are associated with risk of multiple sclerosis.	Epstein Barr virus nuclear antigen 1 IgG levels	1,243 parents and up to 2,356 children from 992 families, 1,956 Mexican American individuals		6p21.32	NR	rs2516049-T		6E-14	(Mexican American)	0.204	unit increase	Illumina [up to 2428201] (imputed)	N
833	chr6	32570399	32570400	rs2516049	26819262	Zhou Y	2016-01-27	Mult Scler	Genetic loci for Epstein-Barr virus nuclear antigen-1 are associated with risk of multiple sclerosis.	Epstein Barr virus nuclear antigen 1 IgG levels	1,243 parents and up to 2,356 children from 992 families, 1,956 Mexican American individuals		6p21.32	NR	rs2516049-T		4E-9	(non-Mexican American)	0.204	unit increase	Illumina [up to 2428201] (imputed)	N
833	chr6	32570399	32570400	rs2516049	26819262	Zhou Y	2016-01-27	Mult Scler	Genetic loci for Epstein-Barr virus nuclear antigen-1 are associated with risk of multiple sclerosis.	Epstein Barr virus nuclear antigen 1 IgG levels	1,243 parents and up to 2,356 children from 992 families, 1,956 Mexican American individuals		6p21.32	NR	rs2516049-T		3E-20		0.204	unit increase	Illumina [up to 2428201] (imputed)	N
833	chr6	32570400	32570401	rs2454138	29521573	Buck D	2018-03-01	Mult Scler	Effect of HLA-DRB1 alleles and genetic variants on the development of neutralizing antibodies to interferon beta in the BEYOND and BENEFIT trials.	Neutralising antibody response to interferon beta therapy in multiple sclerosis (mean antibody levels)	926 European ancestry individuals, 7 Hispanic individuals, 1 Asian ancestry individuals, 1 African ancestry individual, 4 other unknown ancestry individuals, 2 individuals	NA	6p21.32	intergenic	rs2454138-A	0.22	5E-19		0.41	[0.31-0.51] unit increase	Affymetrix [8671751] (imputed)	N
833	chr6	32570400	32570401	rs2454138	29521573	Buck D	2018-03-01	Mult Scler	Effect of HLA-DRB1 alleles and genetic variants on the development of neutralizing antibodies to interferon beta in the BEYOND and BENEFIT trials.	Neutralising antibody response to interferon beta therapy in multiple sclerosis (maximum antibody levels)	926 European ancestry individuals, 7 Hispanic individuals, 1 Asian ancestry individuals, 1 African ancestry individual, 4 other unknown ancestry individuals, 2 individuals	NA	6p21.32	intergenic	rs2454138-A	0.22	1E-18		0.41	unit increase	Affymetrix [8671751] (imputed)	N
833	chr6	32570400	32570401	rs2454138	29521573	Buck D	2018-03-01	Mult Scler	Effect of HLA-DRB1 alleles and genetic variants on the development of neutralizing antibodies to interferon beta in the BEYOND and BENEFIT trials.	Neutralising antibody response to interferon beta therapy in multiple sclerosis (area under the curve for the first two years)	926 European ancestry individuals, 7 Hispanic individuals, 1 Asian ancestry individuals, 1 African ancestry individual, 4 other unknown ancestry individuals, 2 individuals	NA	6p21.32	intergenic	rs2454138-A	0.22	8E-19		0.41	[0.31-0.51] unit increase	Affymetrix [8671751] (imputed)	N
833	chr6	32570416	32570417	rs2647062	32201043	Smeland OB	2020-02-08	Biol Psychiatry	Genome-wide Association Analysis of Parkinson's Disease and Schizophrenia Reveals Shared Genetic Architecture and Identifies Novel Risk Loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	NA	6p21.32	HLA-DRB1	rs2647062-A		6E-12		0.143	[0.1-0.18] unit increase	Illumina [NR]	N
833	chr6	32570416	32570417	rs2647062	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	148,164 European ancestry individuals	NA	6p21.32	HLA-DRB1	rs2647062-A	0.84	1E-11	(BMI-adjusted)	0.048	[0.034-0.062] unit decrease	Affymetrix, Illumina, Perlegen [10019203] (imputed)	N
833	chr6	32570572	32570573	rs558721	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD64 on CD14- CD16-	3,622 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs558721-T	0.07623	2E-8		0.3331	[0.22-0.45] unit increase	Illumina [18215199] (imputed)	N
833	chr6	32570879	32570880	rs556025	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	6p21.32		rs556025-T	0.35263	3E-8		0.039419	[0.025-0.053] unit increase	Affymetrix [15580782] (imputed)	N
833	chr6	32570978	32570984	rs749637599	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hearing loss, difficulty in hearing	14,654 European ancestry cases, 474,839 European ancestry controls, 3,400 East Asian ancestry cases, 175,326 East Asian ancestry controls	NA	6p21.32		rs749637599-G	NR	3E-12		0.174	[0.13-0.22] unit increase	Affymetrix, Illumina [25845022] (imputed)	N
833	chr6	32571319	32571320	rs9270878	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	HLA-DRB1	rs9270878-A	NR	9E-10		0.0181825	[0.012-0.024] unit decrease	Affymetrix [321114] (imputed)	N
833	chr6	32571402	32571403	rs543504257	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	6p21.32	NR	rs543504257-A	0.505796	1E-11		0.0238455	[0.017-0.031] unit increase	Affymetrix [16577313] (imputed)	N
833	chr6	32571607	32571607	rs568533060	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	6p21.32		rs568533060-C	0.706438	8E-14		0.0341811	[0.025-0.043] unit decrease	NR [11722792] (imputed)	N
833	chr6	32571607	32571607	rs568533060	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	6p21.32		rs568533060-C	0.706438	7E-14		0.0345202	[0.025-0.044] unit decrease	NR [11722792] (imputed)	N
833	chr6	32571607	32571607	rs568533060	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs568533060-C	0.706438	5E-29		0.053212	[0.044-0.063] unit decrease	NR [11722792] (imputed)	N
833	chr6	32571607	32571607	rs568533060	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in VLDL	115,082 European ancestry individuals	NA	6p21.32		rs568533060-C	0.706438	9E-26		0.0495169	[0.04-0.059] unit decrease	NR [11722792] (imputed)	N
833	chr6	32571607	32571607	rs568533060	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of monounsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	6p21.32		rs568533060-C	0.706482	2E-15		0.0367883	[0.028-0.046] unit decrease	NR [11722792] (imputed)	N
833	chr6	32571607	32571607	rs568533060	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	6p21.32		rs568533060-C	0.706434	3E-17		0.0396485	[0.03-0.049] unit decrease	NR [11722792] (imputed)	N
833	chr6	32571607	32571607	rs568533060	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in VLDL	115,082 European ancestry individuals	NA	6p21.32		rs568533060-C	0.706438	2E-27		0.0515289	[0.042-0.061] unit decrease	NR [11722792] (imputed)	N
833	chr6	32571607	32571607	rs568533060	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs568533060-C	0.706438	9E-24		0.0468507	[0.038-0.056] unit decrease	NR [11722792] (imputed)	N
833	chr6	32571607	32571607	rs568533060	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs568533060-C	0.706438	2E-18		0.0406936	[0.032-0.05] unit decrease	NR [11722792] (imputed)	N
833	chr6	32571607	32571607	rs568533060	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in VLDL	115,082 European ancestry individuals	NA	6p21.32		rs568533060-C	0.706438	2E-27		0.0519551	[0.043-0.061] unit decrease	NR [11722792] (imputed)	N
833	chr6	32571607	32571607	rs568533060	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small VLDL particles	115,082 European ancestry individuals	NA	6p21.32		rs568533060-C	0.706438	9E-29		0.052781	[0.043-0.062] unit decrease	NR [11722792] (imputed)	N
833	chr6	32571607	32571607	rs568533060	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6p21.32		rs568533060-C	0.706438	2E-15		0.0382094	[0.029-0.048] unit decrease	NR [11722792] (imputed)	N
833	chr6	32571607	32571607	rs568533060	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	6p21.32		rs568533060-C	0.706438	1E-12		0.0332274	[0.024-0.042] unit increase	NR [11722792] (imputed)	N
833	chr6	32571607	32571607	rs568533060	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs568533060-C	0.706438	3E-26		0.0502588	[0.041-0.06] unit decrease	NR [11722792] (imputed)	N
833	chr6	32571607	32571607	rs568533060	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs568533060-C	0.706438	6E-29		0.0531559	[0.044-0.062] unit decrease	NR [11722792] (imputed)	N
833	chr6	32571607	32571607	rs568533060	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs568533060-C	0.706438	7E-19		0.0412687	[0.032-0.05] unit decrease	NR [11722792] (imputed)	N
833	chr6	32571607	32571607	rs568533060	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs568533060-C	0.706438	2E-25		0.0491468	[0.04-0.058] unit decrease	NR [11722792] (imputed)	N
833	chr6	32571607	32571607	rs568533060	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs568533060-C	0.706438	2E-27		0.0510968	[0.042-0.06] unit decrease	NR [11722792] (imputed)	N
833	chr6	32571607	32571607	rs568533060	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs568533060-C	0.706438	4E-19		0.0414004	[0.032-0.05] unit decrease	NR [11722792] (imputed)	N
833	chr6	32571827	32571828	rs9270891	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs9270891-G	0.159	6E-35	(Ubiquitin carboxyl-terminal hydrolase 25, USP25.9215.117.3)	0.41	[0.35-0.47] unit increase	Affymetrix [10572788] (imputed)	N
833	chr6	32571960	32571961	rs17425622	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PLXDC2	5,360 Icelandic ancestry individuals	NA	6p21.32		rs17425622-C	0.1783	1E-21		0.224277	[0.18-0.27] unit decrease	Illumina [7506463] (imputed)	N
833	chr6	32571960	32571961	rs17425622	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Parkinson's disease	9,619 European ancestry cases, 324,522 European ancestry controls	NA	6p21.32	HLA-DQA1, HLA-DRB5	rs17425622-?	NR	4E-17		1.235	[1.174-1.298]	Illumina [12438219] (imputed)	N
833	chr6	32572105	32572106	rs34102154	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Non-Hodgkin's lymphoma	2,400 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs34102154-G	NR	1E-14		1.431	NR	Affymetrix [7846216] (imputed)	N
833	chr6	32572201	32572202	rs9270911	33558538	Gebresilase T	2021-02-08	Sci Rep	Replication of HLA class II locus association with susceptibility to podoconiosis in three Ethiopian ethnic groups.	Podoconiosis	1,137 Ethiopian ancestry cases, 1,152 Ethiopian ancestry controls	NA	6p21.32	intergenic	rs9270911-T	0.44	2E-12				Illumina [2201695]	N
833	chr6	32572201	32572202	rs9270911	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs9270911-?	NR	1E-27				Affymetrix [~ 8270000] (imputed)	N
833	chr6	32573172	32573173	rs601006	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	HLA-DRB1	rs601006-A	NR	9E-10		0.0179058	[0.012-0.024] unit increase	Affymetrix [321114] (imputed)	N
833	chr6	32573414	32573415	rs601945	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	6p21.32	MHC	rs601945-G	0.1775	5E-8		1.06	[1.04-1.08]	Affymetrix, Illumina [~ 27000000] (imputed)	N
833	chr6	32573470	32573471	rs9270965	24204295	Han F	2013-10-31	PLoS Genet	Genome wide analysis of narcolepsy in China implicates novel immune loci and reveals changes in association prior to versus after the 2009 H1N1 influenza pandemic.	Narcolepsy (onset before 2009 H1N1 influenza pandemic)	up to 893 Chinese ancestry cases with onset before the 2009 H1N1 influenza pandemic, up to 373 Chinese ancestry cases with onset after the 2009 H1N1 influenza pandemic	NA	6p21.32	NR	rs9270965-?	NR	5E-12		1.72	[NR]	Affymetrix [603382]	N
833	chr6	32573573	32573574	rs9270970	32771030	Tangtanatakul P	2020-08-08	Arthritis Res Ther	Meta-analysis of genome-wide association study identifies FBN2 as a novel locus associated with systemic lupus erythematosus in Thai population.	Systemic lupus erythematosus	487 Thai cases, 1,606 Thai controls	405 Thai cases, 1,590 Thai controls	6p21.32	HLA-DRB1, HLA-DQA1	rs9270970-G	0.42	4E-26		1.8293	[NR]	Illumina [421909] (imputed)	N
833	chr6	32573627	32573628	rs144123929	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in IDL	115,082 European ancestry individuals	NA	6p21.32		rs144123929-C	0.971917	1E-8		0.0862226	[0.057-0.116] unit decrease	NR [11722792] (imputed)	N
833	chr6	32573628	32573629	rs602875	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DRB1	rs602875-G	NR	1E-8		0.0188152	[0.012-0.025] unit decrease	Affymetrix [319769] (imputed)	N
833	chr6	32573628	32573629	rs602875	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DRB1	rs602875-G	NR	3E-8		0.0183289	[0.012-0.025] unit decrease	Affymetrix [319769] (imputed)	N
833	chr6	32573628	32573629	rs602875	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DRB1	rs602875-G	NR	4E-9		0.0196908	[0.013-0.026] unit decrease	Affymetrix [321169] (imputed)	N
833	chr6	32573628	32573629	rs602875	20018961	Zhang FR	2009-12-16	N Engl J Med	Genomewide association study of leprosy.	Leprosy	706 Han Chinese ancestry cases, 1,225 Han Chinese ancestry controls	3,254 Chinese ancestry cases, 5,955 Chinese ancestry controls	6p21.32	HLA-DR-DQ	rs602875-A	0.68	5E-27		1.61	[1.39-1.61]	Illumina [491883]	N
833	chr6	32573909	32573910	rs2647071	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DRB1	rs2647071-T	NR	2E-8		0.0181138	[0.012-0.024] unit increase	Affymetrix [321169] (imputed)	N
833	chr6	32573990	32573991	rs9270984	23273568	Yang W	2012-12-27	Am J Hum Genet	Meta-analysis followed by replication identifies loci in or near CDKN1B, TET3, CD80, DRAM1, and ARID5B as associated with systemic lupus erythematosus in Asians.	Systemic lupus erythematosus	1,656 Han Chinese ancestry cases, 3,394 Han Chinese ancestry controls	3,256 Han Chinese ancestry cases, 5,667 Han Chinese ancestry controls, 453 Thai ancestry cases, 963 Thai ancestry controls	6p21.32	HLA-DRB1	rs9270984-T	0.18	5E-24		1.73		Illumina [2100739] (imputed)	N
833	chr6	32574059	32574060	rs9270986	25643325	Renton AE	2015-04-01	JAMA Neurol	A genome-wide association study of myasthenia gravis.	Myasthenia gravis	972 European ancestry cases, 1,977 European ancestry controls	423 European ancestry cases, 467 European ancestry controls	6p21.32	HLA-DRB1, HLA-DQA1	rs9270986-A	0.15	6E-8		1.43	[NR]	Illumina [8114394] (imputed)	N
833	chr6	32574170	32574171	rs615672	33736632	Zeng Z	2021-03-18	BMC Med Genomics	Genome-wide association study identifies new loci associated with risk of HBV infection and disease progression.	Persistent hepatitis B virus infection	587 Chinese ancestry persistent cases, 275 Chinese ancestry clearance controls	NA	6p21.32	HLA-DRB1	rs615672-G	0.5276	9E-7		0.5697	NR	Affymetrix [607153]	N
833	chr6	32574170	32574171	rs615672	33736632	Zeng Z	2021-03-18	BMC Med Genomics	Genome-wide association study identifies new loci associated with risk of HBV infection and disease progression.	Hepatitis B	460 Chinese ancestry cases, 169 Chinese ancestry controls	NA	6p21.32	HLA-DRB1	rs615672-?	NR	1E-6				Affymetrix [607153]	N
833	chr6	32574170	32574171	rs615672	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.32	HLA-DRB1	rs615672-G	0.6531	2E-8	(EA)	0.0253	[0.016-0.034] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
833	chr6	32574170	32574171	rs615672	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.32	HLA-DRB1	rs615672-G	0.6427	1E-8		0.0242	[0.016-0.032] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
833	chr6	32574170	32574171	rs615672	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6p21.32	HLA, DRB1	rs615672-G	0.6531	1E-6	(EA)	0.0244	[0.014-0.034] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
833	chr6	32574170	32574171	rs615672	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6p21.32	HLA, DRB1	rs615672-G	0.6427	1E-6		0.0235	[0.014-0.033] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
833	chr6	32574170	32574171	rs615672	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.32	HLA-DRB1	rs615672-?	0.6531	2E-7	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
833	chr6	32574170	32574171	rs615672	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.32	HLA-DRB1	rs615672-?	0.6427	1E-7				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
833	chr6	32574170	32574171	rs615672	17554300	Wellcome Trust Case Control Consortium	2007-06-07	Nature	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Rheumatoid arthritis	1,860 European ancestry cases, 2,938 European ancestry controls	NA	6p21.32	HLA-DRB1	rs615672-?	NR	8E-27				Affymetrix [469557]	N
833	chr6	32574357	32574358	rs2760995	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	6p21.32	NR	rs2760995-?	NR	6E-11				Affymetrix [~ 8270000] (imputed)	N
833	chr6	32574357	32574358	rs2760995	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals, 6,795 African American individuals, 6,324 East Asian ancestry individuals, 2,335 South Asian ancestry individuals, 1,442 Hispanic individuals	NA	6p21.32	HLA-DRB	rs2760995-A	NR	4E-8		0.014	[0.0091-0.0189] unit decrease	Affymetrix, Illumina [8034757] (imputed)	N
833	chr6	32574357	32574358	rs2760995	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Microalbuminuria	51,861 European, African American, East Asian, South Asian or Hispanic ancestry cases, 297,093 European, African American, East Asian, South Asian or Hispanic ancestry controls	NA	6p21.32	HLA-DRB	rs2760995-G	NR	3E-7		1.0445645	[1.03-1.06]	Affymetrix, Illumina [8326000] (imputed)	N
833	chr6	32574359	32574360	rs2647074	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (anti-inflammatory and antirheumatic products, non-steroids)	74,150 European ancestry cases, 90,370 European ancestry controls, 29,694 East Asian ancestry cases, 149,032 East Asian ancestry controls	NA	6p21.32		rs2647074-T	NR	3E-12		0.0772	[0.056-0.099] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
833	chr6	32574359	32574360	rs2647074	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DRB1	rs2647074-T	NR	1E-8		0.0186096	[0.012-0.025] unit decrease	Affymetrix [323123] (imputed)	N
833	chr6	32574359	32574360	rs2647074	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Aspartate aminotransferase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	6p21.32	HLA-DRB1, HLA-DQA1	rs2647074-?		1E-13		0.0387	[0.029-0.049] unit decrease	Illumina [31500000] (imputed)	N
833	chr6	32574359	32574360	rs2647074	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs2647074-T	0.328	1E-34	(Complement C4, C4A.C4B.4481.34.2)	0.32	[0.26-0.38] unit increase	Affymetrix [10572788] (imputed)	N
833	chr6	32574359	32574360	rs2647074	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Total bilirubin levels	110,207 Japanese ancestry individuals	NA	6p21.32	HLA-DRB1, HLA-DQA1	rs2647074-?	NR	3E-10		0.03828	[0.026-0.05] unit increase novel	Illumina [6108953] (imputed)	N
833	chr6	32574536	32574537	rs539705259	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on CD33dim HLA DR+ CD11b+	1,634 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs539705259-G	0.03706	4E-12		0.8225	[0.59-1.05] unit increase	Illumina [16998734] (imputed)	N
833	chr6	32574574	32574575	rs113315602	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	6p21.32	HLA-DRB1	rs113315602-A	0.9027	9E-12		0.003	[0.002-0.004] unit increase	Affymetrix [15275733] (imputed)	N
833	chr6	32574867	32574868	rs7760841	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	6p21.32	HLA-DQA1, HLA-DQB1, HLA-DRA, HLA-DRB1, HLA-DRB5, HLA-DRB6	rs7760841-T	0.176847	1E-12		1.1059403	[1.08-1.13]	Affymetrix [8274727] (imputed)	N
833	chr6	32574955	32574956	rs145945003	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Yeast infection	52,218 European ancestry cases, 10,235 European ancestry controls	NA	6p21.32	NR	rs145945003-?	NR	1E-7		0.0858	[0.054-0.117] unit decrease	Illumina [at least 560000] (imputed)	N
833	chr6	32574989	32574990	rs9271025	34532061	Hodel F	2021-06-11	Virus Evol	Human genomics of the humoral immune response against polyomaviruses.	Anti-JC polyomavirus IgG seropositivity	8,567 European ancestry antibody-positive cases cases, up to 6,836 European ancestry antibody-negative controls	NA	6p21.32		rs9271025-?	NR	4E-46				Affymetrix [NR] (imputed)	N
833	chr6	32575098	32575099	rs7761182	27864402	Harris SE	2017-06-01	Int J Epidemiol	Molecular genetic contributions to self-rated health.	Self-rated health	111,749 British ancestry individuals	NA	6p21.32	HLA	rs7761182-?	NR	2E-9		0.03	[NR] unit increase	Affymetrix [~ 17300000] (imputed)	N
833	chr6	32575216	32575217	rs13193738	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Strep throat	52,487 European ancestry cases, 22,017 European ancestry controls	NA	6p21.32	NR	rs13193738-?	NR	1E-7		0.0467	[0.029-0.064] unit increase	Illumina [at least 560000] (imputed)	N
833	chr6	32575431	32575432	rs113742050	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DRB1	rs113742050-T	NR	4E-12		0.0348298	[0.025-0.045] unit increase	Affymetrix [319769] (imputed)	N
833	chr6	32575431	32575432	rs113742050	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DRB1	rs113742050-T	NR	2E-12		0.0353099	[0.025-0.045] unit increase	Affymetrix [319769] (imputed)	N
833	chr6	32575512	32575513	rs9271060	26891255	Jung ES	2016-02-18	Inflamm Bowel Dis	HLA-C*01 is a Risk Factor for Crohn's Disease.	Crohn's disease	275 Korean ancestry cases, 2,369 Korean ancestry controls	242 Korean ancestry cases, 1,066 Korean ancestry controls	6p21.32	HLA-DQA1, HLA-DRB1	rs9271060-G	0.77	1E-22		2.857143	[2.33-3.57]	Affymetrix [3387207] (imputed)	N
833	chr6	32575523	32575524	rs4713555	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs4713555-?	NR	7E-13				Affymetrix [~ 8270000] (imputed)	N
833	chr6	32575523	32575524	rs4713555	26482879	Paternoster L	2015-10-19	Nat Genet	Multi-ancestry genome-wide association study of 21,000 cases and 95,000 controls identifies new risk loci for atopic dermatitis.	Atopic dermatitis	18,900 European ancestry cases, 1,472 Japanese ancestry cases, 422 African American cases, 300 Latino cases, 305 cases, 84,166 European ancestry controls, 7,966 Japanese ancestry controls, 844 African American controls, 1,592 Latino controls, 896 controls	30,588 European ancestry cases, 459 African American cases, 1,012 Chinese ancestry cases, 226,537 European ancestry controls, 729 African American controls, 1,362 Chinese ancestry controls	6p21.32	HLA-DRB1, HLA-DQA1	rs4713555-G	0.73	5E-9	(EA, fixed effects)	1.098901		Illumina [15539996] (imputed)	N
833	chr6	32575630	32575631	rs9271066	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	683 Turkish ancestry cases, 1,721 Turkish ancestry controls	NA	6p21.32	HLA-DRB1	rs9271066-?	NR	2E-11	(conditional on rs2844678, rs9262437, rs61444472 and rs17193507)			Illumina [4495750] (imputed)	N
833	chr6	32575657	32575658	rs3021304	25108386	Hou S	2014-08-10	Nat Genet	Genome-wide association analysis of Vogt-Koyanagi-Harada syndrome identifies two new susceptibility loci at 1p31.2 and 10q21.3.	Vogt-Koyanagi-Harada syndrome	774 Han Chinese ancestry cases, 2,009 Han Chinese ancestry controls	764 Han Chinese ancestry cases, 3594 Han Chinese ancestry controls	6p21.32	HLA-DRB1, HLA-DQA1	rs3021304-G	0.346	1E-118		2.97	[2.71-3.26]	Affymetrix, Illumina [2208258] (imputed)	N
833	chr6	32575734	32575735	rs9461776	25030430	Zignego AL	2014-07-17	Genes Immun	Genome-wide association study of hepatitis C virus- and cryoglobulin-related vasculitis.	Mixed cryoglobulinemia vasculitis in chronic hepatitis C infection	356 European ancestry cases, 447 European ancestry controls	92 European ancestry cases, 179 European ancestry controls	6p21.32	HLA-DQA1, HLA-DRB1	rs9461776-G	0.29	7E-9		2.02	[NR]	Illumina [899641]	N
833	chr6	32575982	32575983	rs12660719	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs12660719-A	0.961474	2E-15		0.0823824	[0.062-0.103] unit decrease	NR [11722792] (imputed)	N
833	chr6	32576085	32576086	rs9271082	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	IgA nephropathy	1,180 East Asian ancestry cases, 899 East Asian ancestry controls	NA			rs9271082-C	NR	8E-9		0.466252	[0.31-0.62] unit increase	Illumina [NR] (imputed)	N
833	chr6	32576477	32576478	rs9271100	25642632	Liu H	2015-02-02	Nat Genet	Discovery of six new susceptibility loci and analysis of pleiotropic effects in leprosy.	Leprosy	1,548 Chinese ancestry cases, 2,150 Chinese ancestry controls, 4,362 Chinese ancestry controls with immune-related diseases	6,765 Chinese ancestry cases, 9,505 Chinese ancestry controls	6p21.32	HLA-DR-DQ	rs9271100-T	0.217	8E-95		1.68	[NR]	Illumina [4577171] (imputed)	N
833	chr6	32576477	32576478	rs9271100	19838193	Han JW	2009-10-18	Nat Genet	Genome-wide association study in a Chinese Han population identifies nine new susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	1,047 Han Chinese ancestry cases, 1,205 Han Chinese ancestry controls	3,152 Han Chinese ancestry cases, 7,050 Han Chinese ancestry controls	6p21.32	HLA-DRB1	rs9271100-?	NR	1E-12		1.9	[1.59-2.27]	Illumina [493955]	N
833	chr6	32576794	32576795	rs9271117	24204295	Han F	2013-10-31	PLoS Genet	Genome wide analysis of narcolepsy in China implicates novel immune loci and reveals changes in association prior to versus after the 2009 H1N1 influenza pandemic.	Narcolepsy (onset before 2009 H1N1 influenza pandemic)	up to 893 Chinese ancestry cases with onset before the 2009 H1N1 influenza pandemic, up to 373 Chinese ancestry cases with onset after the 2009 H1N1 influenza pandemic	NA	6p21.32	NR	rs9271117-?	NR	6E-14		1.75	[NR]	Affymetrix [603382]	N
833	chr6	32577379	32577380	rs660895	33517400	Ahluwalia TS	2021-01-30	Hum Mol Genet	Genome-Wide Association Study of Circulating Interleukin 6 Levels Identifies Novel Loci.	Interleukin-6 levels	52,654 European ancestry individuals	14,774 European ancestry individuals	6p21.32	HLADRB1, HLADQA1	rs660895-G	0.186447	2E-10		0.035794	[0.024-0.047] unit increase	Affymetrix, Illumina, Perlegen [2454025] (imputed)	N
833	chr6	32577379	32577380	rs660895	32912934	Li M	2020-09-10	J Am Soc Nephrol	Genome-Wide Meta-Analysis Identifies Three Novel Susceptibility Loci and Reveals Ethnic Heterogeneity of Genetic Susceptibility for IgA Nephropathy.	IgA nephropathy	2,628 Chinese ancestry cases, 11,563 Chinese ancestry controls	6,879 Han Chinese ancestry cases, 9,019 Han Chinese ancestry controls, 1,039 Italian ancestry cases, 1,289 Italian ancestry controls	6p21.32	DQB1.DRB1	rs660895-G	0.2533255867854363	1E-14	(East Asian)	1.3539767	[1.25335647918749-1.46267487262285]	NR [3611808] (imputed)	N
833	chr6	32577379	32577380	rs660895	26028593	Li M	2015-06-01	Nat Commun	Identification of new susceptibility loci for IgA nephropathy in Han Chinese.	IgA nephropathy	1,434 Han Chinese ancestry cases, 10,661 Han Chinese ancestry controls	6,879 Han Chinese ancestry cases, 9,019 Han Chinese ancestry controls	6p21.32	NR	rs660895-G	0.259	1E-10		1.289	[1.184-1.402]	Illumina [3792949] (imputed)	N
833	chr6	32577379	32577380	rs660895	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis (ACPA-positive)	up to 9,585 European ancestry cases, up to 33,742 European ancestry controls	NA	6p21.32	HLA	rs660895-G	NR	1E-300		3.0299		Illumina [129464] (imputed)	N
833	chr6	32577379	32577380	rs660895	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis (ACPA-negative)	3,297 European ancestry cases, 15,870 European ancestry controls	NA	6p21.32	HLA	rs660895-G	NR	2E-8		1.2083		Illumina [129464]	N
833	chr6	32577379	32577380	rs660895	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis	up to 13,838 European ancestry cases, up to 33,742 European ancestry controls	NA	6p21.32	HLA	rs660895-G	NR	1E-300		2.265		Illumina [129464] (imputed)	N
833	chr6	32577379	32577380	rs660895	22197929	Yu XQ	2011-12-25	Nat Genet	A genome-wide association study in Han Chinese identifies multiple susceptibility loci for IgA nephropathy.	IgA nephropathy	1,434 Han Chinese ancestry cases, 4,270 Han Chinese ancestry controls	2,703 Han Chinese ancestry cases, 3,464 Han Chinese ancestry controls	6p21.32	HLA-DRB1	rs660895-G	0.24	4E-20		1.34	[1.26-1.42]	Illumina [444882]	N
833	chr6	32577379	32577380	rs660895	17804836	Plenge RM	2007-09-05	N Engl J Med	TRAF1-C5 as a risk locus for rheumatoid arthritis--a genomewide study.	Rheumatoid arthritis	1,522 European ancestry cases, 1,850 European ancestry controls	1,053 European ancestry cases, 1,858 European ancestry controls	6p21.32	HLA-DRB1	rs660895-?	0.21	1E-108		3.62	[NR]	Illumina [297086]	N
833	chr6	32577386	32577387	rs36022506	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.32	Intergenic	rs36022506-?		2E-6		1.06	[1.03-1.08]	Illumina [7645193] (imputed)	N
833	chr6	32577632	32577633	rs535777	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)(bidirectional)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs535777-G	NR	4E-12				Affymetrix [7846216] (imputed)	N
833	chr6	32577632	32577633	rs535777	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Help-seeking from a psychiatrist	36,286 British ancestry cases, 297,126 British ancestry controls	NA	6p21.32	NR	rs535777-G	0.862	1E-9		1.0752687	NR	NR [5276842] (imputed)	N
833	chr6	32577632	32577633	rs535777	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Help-seeking from a GP	113,262 British ancestry cases, 219,360 British ancestry controls	NA	6p21.32	NR	rs535777-?	NR	5E-6		1.0362694	[1.02-1.05]	NR [5276842] (imputed)	N
833	chr6	32577888	32577889	rs9271170	31766143	Ortega-Azorin C	2019-11-13	Nutrients	Candidate Gene and Genome-Wide Association Studies for Circulating Leptin Levels Reveal Population and Sex-Specific Associations in High Cardiovascular Risk Mediterranean Subjects.	Circulating leptin levels in high cardiovascular risk	351 Spanish mediterranean ancestry men, 615 Spanish mediterranean ancestry women	NA	6p21.32	intergenic	rs9271170-?	0.24	8E-6	(model 2)	0.161	NR unit increase	Illumina [628376]	N
833	chr6	32578081	32578082	rs674313	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	6p21.32	NR	rs674313-?	NR	2E-10	(MIC-A)	0.503744	[0.35-0.66] unit increase	Illumina [11901634] (imputed)	N
833	chr6	32578081	32578082	rs674313	21131588	Slager SL	2010-12-03	Blood	Genome-wide association study identifies a novel susceptibility locus at 6p21.3 among familial CLL.	Chronic lymphocytic leukemia	407 European ancestry cases, 296 European ancestry controls	252 European ancestry cases, 965 European ancestry controls	6p21.32	HLA-DRB5	rs674313-T	0.26	7E-9		1.69	[1.41-2.01]	Affymetrix [827777]	N
833	chr6	32578126	32578127	rs9271176	28165464	Law PJ	2017-02-06	Nat Commun	Genome-wide association analysis implicates dysregulation of immunity genes in chronic lymphocytic leukaemia.	Chronic lymphocytic leukemia	4,478 European ancestry cases and 13,213 European ancestry controls.	1,722 European ancestry cases and 4,385 European ancestry controls.	6p21.32	HLA	rs9271176-G	NR	3E-20		1.29	[1.22-1.36]	Affymetrix, Illumina [> 10000000] (imputed)	N
833	chr6	32578277	32578278	rs2858863	31235810	Fung K	2019-06-24	Sci Rep	Genome-wide association study identifies loci for arterial stiffness index in 127,121 UK Biobank participants.	Arterial stiffness index	127,121 European ancestry individuals	NA	6p21.32	HLA-DRB1	rs2858863-C	0.796	5E-6		0.023	[0.013-0.033] unit increase	Affymetrix [~ 10446505] (imputed)	N
833	chr6	32578529	32578530	rs9271192	31473137	Moreno-Grau S	2019-08-13	Alzheimers Dement	Genome-wide association analysis of dementia and its clinical endophenotypes reveal novel loci associated with Alzheimer's disease and three causality networks: The GR@ACE project.	Alzheimer's disease	4,120 Spanish ancestry cases, 17,008 cases, 3,289 Spanish ancestry controls, 37,154 controls	1,943 Spanish ancestry cases, 8,572 cases, 3,016 Spanish ancestry controls, 11,312 controls	6p21.32	HLA-DRB5	rs9271192-?	NR	5E-7		1.09	[1.13-1.05]	Affymetrix [up to 7055881] (imputed)	N
833	chr6	32578529	32578530	rs9271192	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	6p21.32	HLA-DRB5, HLA-DRB1	rs9271192-C	0.2751	4E-8		5.49	NR z-unit increase	Affymetrix, Illumina [up to 10847151] (imputed)	N
833	chr6	32578529	32578530	rs9271192	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease (late onset)	24,087 European ancestry cases, 55,058 European ancestry controls	NA	6p21.32	HLA-DRB5, HLA-DRB1	rs9271192-C	NR	5E-7		5.02	NR z-score increase	Illumina [up to 9862738] (imputed)	N
833	chr6	32578529	32578530	rs9271192	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	6p21.32	NR	rs9271192-?	NR	7E-10		1.0530598		Affymetrix [7795605] (imputed)	N
833	chr6	32578529	32578530	rs9271192	24162737	Lambert JC	2013-10-27	Nat Genet	Meta-analysis of 74,046 individuals identifies 11 new susceptibility loci for Alzheimer's disease.	Alzheimer's disease (late onset)	17,008 European ancestry cases, 37,154 European ancestry controls	8,572 European ancestry cases, 11,312 European ancestry controls	6p21.32	HLA-DRB5, HLA-DRB1	rs9271192-C	0.276	3E-12		1.11	[1.08-1.18]	Illumina [7055881] (imputed)	N
833	chr6	32578589	32578590	rs3997868	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.32	NR	rs3997868-?	NR	1E-13				Affymetrix [~ 8270000] (imputed)	N
833	chr6	32578632	32578633	rs5021727	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs5021727-A	0.540791	2E-9		0.0240273	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
833	chr6	32578632	32578633	rs5021727	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs5021727-A	0.540791	4E-8		0.0219961	[0.014-0.03] unit decrease	NR [11722792] (imputed)	N
833	chr6	32578632	32578633	rs5021727	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs5021727-A	0.540791	1E-8		0.0228075	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
833	chr6	32578632	32578633	rs5021727	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	6p21.32		rs5021727-?	NR	3E-9		0.00542275	[0.0036-0.0072] unit decrease	NR [NR]	N
833	chr6	32578632	32578633	rs5021727	31589552	Lind L	2019-10-07	Metab Syndr Relat Disord	Genome-Wide Association Study of the Metabolic Syndrome in UK Biobank.	Metabolic syndrome	291,107 European ancestry individuals	NA	6p21.32	HLA-DRB1	rs5021727-G	0.461566	2E-8		0.0371336	[0.024-0.05] unit increase	Affymetrix [9463307] (imputed)	N
833	chr6	32579034	32579035	rs9271209	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	6p21.32	NR	rs9271209-?	NR	2E-85	(EA)			Affymetrix, Illumina [~ 9000000] (imputed)	N
833	chr6	32579276	32579277	rs9271215	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Gynecologic disease (multivariate analysis)	up to 7,975 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.32	Intergenic	rs9271215-?		2E-8	(uterine fibroid, uterine cervical cancer)			Illumina [7645193] (imputed)	N
833	chr6	32579622	32579623	rs28752509	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs28752509-C	0.542361	3E-18		0.0343946	[0.027-0.042] unit increase	NR [11722792] (imputed)	N
833	chr6	32579622	32579623	rs28752509	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs28752509-C	0.542361	1E-17		0.0336941	[0.026-0.041] unit increase	NR [11722792] (imputed)	N
833	chr6	32579625	32579626	rs28752510	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs28752510-G	0.542559	5E-23		0.0388531	[0.031-0.047] unit decrease	NR [11722792] (imputed)	N
833	chr6	32579625	32579626	rs28752510	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6p21.32		rs28752510-G	0.542559	2E-17		0.033878	[0.026-0.042] unit decrease	NR [11722792] (imputed)	N
833	chr6	32579625	32579626	rs28752510	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	6p21.32		rs28752510-G	0.542559	5E-9		0.0230374	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
833	chr6	32579625	32579626	rs28752510	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	6p21.32		rs28752510-G	0.542559	3E-13		0.0296091	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
833	chr6	32579625	32579626	rs28752510	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	6p21.32		rs28752510-G	0.542559	3E-13		0.0294341	[0.022-0.037] unit decrease	NR [11722792] (imputed)	N
833	chr6	32579625	32579626	rs28752510	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	6p21.32		rs28752510-G	0.542559	4E-17		0.0335623	[0.026-0.041] unit decrease	NR [11722792] (imputed)	N
833	chr6	32579625	32579626	rs28752510	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs28752510-G	0.542559	4E-14		0.0312145	[0.023-0.039] unit increase	NR [11722792] (imputed)	N
833	chr6	32579625	32579626	rs28752510	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	6p21.32		rs28752510-G	0.542559	5E-10		0.0257222	[0.018-0.034] unit increase	NR [11722792] (imputed)	N
833	chr6	32579625	32579626	rs28752510	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs28752510-G	0.542559	1E-19		0.035402	[0.028-0.043] unit increase	NR [11722792] (imputed)	N
833	chr6	32579625	32579626	rs28752510	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	6p21.32		rs28752510-G	0.542559	2E-9		0.0240001	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
833	chr6	32579625	32579626	rs28752510	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	6p21.32		rs28752510-G	0.542559	3E-14		0.030005	[0.022-0.038] unit increase	NR [11722792] (imputed)	N
833	chr6	32579625	32579626	rs28752510	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs28752510-G	0.542559	2E-20		0.0362502	[0.029-0.044] unit increase	NR [11722792] (imputed)	N
833	chr6	32579625	32579626	rs28752510	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	6p21.32		rs28752510-G	0.542559	2E-11		0.027339	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
833	chr6	32579625	32579626	rs28752510	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	6p21.32		rs28752510-G	0.542559	2E-15		0.0309552	[0.023-0.039] unit increase	NR [11722792] (imputed)	N
833	chr6	32579670	32579671	rs13191975	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs13191975-T	NR	4E-12		0.0198638	[0.014-0.025] unit increase	Affymetrix [321169] (imputed)	N
833	chr6	32580501	32580502	rs9368730	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	6p21.32	HLA-DRB1, HLA-DQA1	rs9368730-G	0.876	2E-8		1.403	[0.74-2.07] ml/min/1.73m2 decrease	Affymetrix, Illumina [at least 5248638] (imputed)	N
833	chr6	32581500	32581501	rs9271296	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR++ monocyte %monocyte	3,595 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9271296-G	0.55558	4E-23		0.3033	[0.24-0.36] unit decrease	Illumina [18380843] (imputed)	N
833	chr6	32581683	32581684	rs1966002	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs1966002-T	0.454	8E-31		1.337	[1.29-1.39]	Illumina [11270530] (imputed)	N
833	chr6	32581739	32581741	rs776111176	30552067	Shrine N	2018-12-11	Lancet Respir Med	Moderate-to-severe asthma in individuals of European ancestry: a genome-wide association study.	Asthma (moderate or severe)	5,135 European ancestry cases, 25,675 European ancestry controls	5,414 European ancestry cases, 21,471 European ancestry controls	6p21.32	HLA-DQA1	rs776111176-A	0.1485	3E-16		1.1904762	[1.14-1.23]	Affymetrix [33771858] (imputed)	N
833	chr6	32581888	32581889	rs4530903	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6p21.32		rs4530903-?	NR	9E-20		1.15592	[1.12-1.19]	NR [685523]	N
833	chr6	32581888	32581889	rs4530903	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs4530903-T	0.19	2E-8		4.08	[3.13-5.32]	Illumina [NR] (imputed)	N
833	chr6	32581888	32581889	rs4530903	23349640	Vijai J	2013-01-17	PLoS Genet	Susceptibility loci associated with specific and shared subtypes of lymphoid malignancies.	Lymphoma	275 Follicular non-Hodgkin's Lymphoma cases, 269 diffuse large B-cell non-Hodgkin's Lymphoma cases, 198 other non-Hodgkin's Lymphoma cases, 202 Hodgkin's Lymphoma cases, 4,044 controls	202 European ancestry Follicular non-Hodgkin's Lymphoma cases, 367 European ancestry diffuse large B-cell non-Hodgkin's Lymphoma cases, 577 European ancestry other non-Hodgkin's Lymphoma cases, 99 European ancestry Hodgkin's Lymphoma cases, 2,596 European ancestry controls	6p21.32	HLA-DRB5, HLA-DQA1	rs4530903-T	NR	3E-6	(LYM)	1.29	[1.16-1.43]	Affymetrix [530583]	N
833	chr6	32581888	32581889	rs4530903	23349640	Vijai J	2013-01-17	PLoS Genet	Susceptibility loci associated with specific and shared subtypes of lymphoid malignancies.	Lymphoma	275 Follicular non-Hodgkin's Lymphoma cases, 269 diffuse large B-cell non-Hodgkin's Lymphoma cases, 198 other non-Hodgkin's Lymphoma cases, 202 Hodgkin's Lymphoma cases, 4,044 controls	202 European ancestry Follicular non-Hodgkin's Lymphoma cases, 367 European ancestry diffuse large B-cell non-Hodgkin's Lymphoma cases, 577 European ancestry other non-Hodgkin's Lymphoma cases, 99 European ancestry Hodgkin's Lymphoma cases, 2,596 European ancestry controls	6p21.32	HLA-DRB5, HLA-DQA1	rs4530903-T	NR	3E-12	(FL)	1.93	[NR]	Affymetrix [530583]	N
833	chr6	32581888	32581889	rs4530903	23349640	Vijai J	2013-01-17	PLoS Genet	Susceptibility loci associated with specific and shared subtypes of lymphoid malignancies.	Lymphoma	275 Follicular non-Hodgkin's Lymphoma cases, 269 diffuse large B-cell non-Hodgkin's Lymphoma cases, 198 other non-Hodgkin's Lymphoma cases, 202 Hodgkin's Lymphoma cases, 4,044 controls	202 European ancestry Follicular non-Hodgkin's Lymphoma cases, 367 European ancestry diffuse large B-cell non-Hodgkin's Lymphoma cases, 577 European ancestry other non-Hodgkin's Lymphoma cases, 99 European ancestry Hodgkin's Lymphoma cases, 2,596 European ancestry controls	6p21.32	HLA-DRB5, HLA-DQA1	rs4530903-T	NR	2E-8	(NHL)	1.37	[1.23-1.54]	Affymetrix [530583]	N
833	chr6	32581888	32581889	rs4530903	23212062	Fanous AH	2012-12-01	Am J Psychiatry	Genome-wide association study of clinical dimensions of schizophrenia: polygenic effect on disorganized symptoms.	Schizophrenia	2,454 European ancestry cases	NA	6p21.32	HLA-DRB1, HLA-DQA1	rs4530903-?	NR	5E-6	(Negative/disorganized symptoms)	0.0919	[NR] unit increase	Affymetrix [696491]	N
833	chr6	32581921	32581922	rs522308	29521573	Buck D	2018-03-01	Mult Scler	Effect of HLA-DRB1 alleles and genetic variants on the development of neutralizing antibodies to interferon beta in the BEYOND and BENEFIT trials.	Neutralising antibody response to interferon beta therapy in multiple sclerosis (presence of antibodies)	361 European, Hispanic, Asian, African or unknown ancestry cases, 580 European, Hispanic, Asian, African or unknown ancestry controls	NA	6p21.32	intergenic	rs522308-T	0.25	2E-15		2.6	[2.05-3.29]	Affymetrix [8671751] (imputed)	N
833	chr6	32582481	32582482	rs9271324	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	Composite immunoglobulin trait (IgA x IgG x IgM)	14,183 Icelandic ancestry individuals	2,146 Swedish ancestry individuals	6p21.32	HLA-DQA1	rs9271324-G	0.2804	4E-19		0.11	NR SD units decrease	Illumina [21568490] (imputed)	N
833	chr6	32582512	32582513	rs9271325	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	6p21.32		rs9271325-?	NR	2E-8		0.00512579	[0.0033-0.0069] unit increase	NR [NR]	N
833	chr6	32582600	32582601	rs34656207	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	6p21.32		rs34656207-T	NR	1E-126		0.0477	[0.044-0.052] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
833	chr6	32582600	32582601	rs34656207	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	6p21.32	HLA-DRB1, HLA-DQA1	rs34656207-T	0.36	1E-111		22.4	z-score increase	Affymetrix [4314223] (imputed)	N
833	chr6	32582611	32582612	rs3104414	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DQA1	rs3104414-A	NR	9E-13		0.0232695	[0.017-0.03] unit decrease	Affymetrix [323123] (imputed)	N
833	chr6	32582611	32582612	rs3104414	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR+ T cell%T cell	3,596 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs3104414-A	0.35131	9E-9		0.1693	[0.11-0.23] unit increase	Illumina [18380873] (imputed)	N
833	chr6	32582611	32582612	rs3104414	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Chronic sinus infection	5,291 European ancestry cases, 79,622 European ancestry controls	NA	6p21.32	NR	rs3104414-?	NR	2E-6		0.104	[0.061-0.147] unit decrease	Illumina [at least 560000] (imputed)	N
833	chr6	32582649	32582650	rs3104413	26272072	Jiang X	2015-08-13	Rheumatology (Oxford)	An Immunochip-based interaction study of contrasting interaction effects with smoking in ACPA-positive versus ACPA-negative rheumatoid arthritis.	ACPA-positive rheumatoid arthritis (smoking interaction)	340 European ancestry never-smoker cases, 493 European ancestry ever-smoker cases, 746 European ancestry never-smoker controls, 994 European ancestry ever-smoker controls	187 European ancestry never-smoker cases, 421 European ancestry ever-smoker cases, 461 European ancestry never-smoker controls, 447 European ancestry ever-smoker controls	6p21.32	NR	rs3104413-?	NR	2E-10	(adjusted for HLA shared epitope)	1.7857143	[1.35-2.56]	Illumina [133648] (imputed)	N
833	chr6	32582649	32582650	rs3104413	25014791	Govind N	2014-08-14	Mol Med	Immunochip identifies novel, and replicates known, genetic risk loci for rheumatoid arthritis in black South Africans.	Rheumatoid arthritis	263 South African Black cases and 374 South African Black controls	NA	6p21.32	HLA-DRB1	rs3104413-?	NR	5E-21		3.88		Illumina [103770]	N
833	chr6	32582896	32582897	rs117356394	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PRSS8	5,356 Icelandic ancestry individuals	NA	6p21.32		rs117356394-G	0.01954	5E-13		0.472302	[0.34-0.6] unit increase	Illumina [7506463] (imputed)	N
833	chr6	32582896	32582897	rs117356394	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein BAGE3	5,360 Icelandic ancestry individuals	NA	6p21.32		rs117356394-G	0.01954	5E-13		0.48146	[0.35-0.61] unit increase	Illumina [7506463] (imputed)	N
833	chr6	32583004	32583005	rs6917212	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on CD33dim HLA DR+ CD11b-	1,635 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs6917212-G	0.76363	2E-23		0.4456	[0.36-0.53] unit decrease	Illumina [16999305] (imputed)	N
833	chr6	32583004	32583005	rs6917212	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on CD33dim HLA DR+ CD11b+	1,634 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs6917212-G	0.23621	2E-26		0.4813	[0.39-0.57] unit decrease	Illumina [16998734] (imputed)	N
833	chr6	32583004	32583005	rs6917212	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on CD14- CD16+ monocyte	3,621 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs6917212-G	0.77661	1E-48		0.476	[0.41-0.54] unit decrease	Illumina [18212658] (imputed)	N
833	chr6	32583004	32583005	rs6917212	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on CD14+ CD16+ monocyte	3,618 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs6917212-G	0.77656	4E-58		0.5221	[0.46-0.58] unit decrease	Illumina [18213821] (imputed)	N
833	chr6	32583045	32583046	rs3129754	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs3129754-G	NR	8E-13		0.020445	[0.015-0.026] unit increase	Affymetrix [319769] (imputed)	N
833	chr6	32583045	32583046	rs3129754	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs3129754-G	NR	2E-12		0.0200088	[0.014-0.026] unit increase	Affymetrix [319769] (imputed)	N
833	chr6	32583056	32583057	rs3129755	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs3129755-A	0.434675	3E-21		0.0380258	[0.03-0.046] unit decrease	NR [11722792] (imputed)	N
833	chr6	32583056	32583057	rs3129755	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	6p21.32		rs3129755-A	0.434675	1E-20		0.037327	[0.029-0.045] unit increase	NR [11722792] (imputed)	N
833	chr6	32583056	32583057	rs3129755	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	6p21.32		rs3129755-A	0.434675	2E-23		0.0397462	[0.032-0.048] unit increase	NR [11722792] (imputed)	N
833	chr6	32583158	32583159	rs4959106	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Interleukin-6 levels	21,758 European ancestry individuals	9,173 individuals	6p21.32		rs4959106-T	0.54	7E-13		0.0741	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
833	chr6	32583273	32583274	rs13208697	34785669	Grosche S	2021-11-16	Nat Commun	Rare variant analysis in eczema identifies exonic variants in DUSP1, NOTCH4 and SLC9A4.	Eczema	20,016 European ancestry cases, 380,433 European ancestry controls	NA	6p21.32		rs13208697-T	0.1461	7E-18		0.86		Affymetrix, Illumina [9397031] (imputed)	N
833	chr6	32583356	32583357	rs6931277	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Family history of Alzheimer's disease	47,793 European ancestry cases, 328,320 European ancestry controls	NA	6p21.32	HLA-DRB1	rs6931277-T	NR	2E-7		5.22	NR z-score decrease	Affymetrix [10847151] (imputed)	N
833	chr6	32583356	32583357	rs6931277	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	6p21.32	HLA-DRB1	rs6931277-T	0.153	8E-11		6.49	NR z-unit decrease	Affymetrix, Illumina [up to 10847151] (imputed)	N
833	chr6	32583356	32583357	rs6931277	26272072	Jiang X	2015-08-13	Rheumatology (Oxford)	An Immunochip-based interaction study of contrasting interaction effects with smoking in ACPA-positive versus ACPA-negative rheumatoid arthritis.	ACPA-positive rheumatoid arthritis (smoking interaction)	340 European ancestry never-smoker cases, 493 European ancestry ever-smoker cases, 746 European ancestry never-smoker controls, 994 European ancestry ever-smoker controls	187 European ancestry never-smoker cases, 421 European ancestry ever-smoker cases, 461 European ancestry never-smoker controls, 447 European ancestry ever-smoker controls	6p21.32	NR	rs6931277-?	NR	2E-10	(adjusted for HLA shared epitope)	1.7857143	[1.35-2.56]	Illumina [133648] (imputed)	N
833	chr6	32583400	32583401	rs7760731	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p21.32	HLA-DQA1	rs7760731-C	0.642	6E-11		0.087	[0.062-0.112] unit increase	Affymetrix, Illumina [7374092] (imputed)	N
833	chr6	32583476	32583477	rs28383223	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	6p21.32	HLA-DRB1, HLA-DQA1	rs28383223-T	0.58	7E-38		12.9	z-score increase	Affymetrix [4312306] (imputed)	N
833	chr6	32583503	32583504	rs114991247	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Growth-regulated protein alpha levels	3,505 Finnish ancestry individuals	NA	6p21.32	NR	rs114991247-C		8E-6		0.2092	[0.12-0.3] SD units increase	NR [10700000] (imputed)	N
833	chr6	32583652	32583653	rs28383224	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs28383224-A	NR	4E-20		0.0262329	[0.021-0.032] unit decrease	Affymetrix [319769] (imputed)	N
833	chr6	32583652	32583653	rs28383224	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs28383224-A	NR	1E-19		0.0258764	[0.02-0.031] unit decrease	Affymetrix [319769] (imputed)	N
833	chr6	32583652	32583653	rs28383224	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs28383224-A	NR	9E-10		0.0176752	[0.012-0.023] unit decrease	Affymetrix [321114] (imputed)	N
833	chr6	32583652	32583653	rs28383224	29769526	Estrada K	2018-05-16	Nat Commun	A whole-genome sequence study identifies genetic risk factors for neuromyelitis optica.	Neuromyelitis optica (AQP4-IgG-positive)	66 European ancestry cases, 784 European ancestry controls	66 European ancestry cases, 460 European ancestry controls	6p21.32	HLA-DQA1	rs28383224-A	0.42	8E-11		2.66	[1.98-3.56]	Affymetrix [6804788] (imputed)	N
833	chr6	32583652	32583653	rs28383224	29769526	Estrada K	2018-05-16	Nat Commun	A whole-genome sequence study identifies genetic risk factors for neuromyelitis optica.	Neuromyelitis optica	66 European ancestry AQP4-IgG antibody seropositive cases, 63 European ancestry AQP4-IgG antibody seronegative cases, 784 European ancestry controls	66 European ancestry AQP4-IgG antibody seropositive cases, 20 European ancestry AQP4-IgG antibody seronegative cases, 460 European ancestry controls	6p21.32	HLA-DQA1	rs28383224-A	0.42	6E-12		2.24	[1.78-2.82]	Affymetrix [6804788] (imputed)	N
833	chr6	32583741	32583742	rs9271348	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein KCNE2	5,364 Icelandic ancestry individuals	NA	6p21.32		rs9271348-G	0.3219	7E-13		0.143439	[0.1-0.18] unit decrease	Illumina [7506463] (imputed)	N
833	chr6	32583741	32583742	rs9271348	24532677	Bossini-Castillo L	2014-02-14	Ann Rheum Dis	A genome-wide association study of rheumatoid arthritis without antibodies against citrullinated peptides.	Rheumatoid arthritis (ACPA-negative)	1,148 European ancestry cases, 6,008 European ancestry controls	774 European ancestry cases, 1,079 European ancestry controls	6p21.32	HLA-DRB1, HLA-DQA1	rs9271348-?		5E-7		1.2821	[NR]	Illumina [452367]	N
833	chr6	32583812	32583813	rs1846190	34493870	Wightman DP	2021-09-07	Nat Genet	A genome-wide association study with 1,126,563 individuals identifies new risk loci for Alzheimer's disease.	Late-onset Alzheimer's disease	90,338 cases, 1,036,225 controls	NA	6p21.32		rs1846190-?	NR	3E-14				Illumina [NR] (imputed)	N
833	chr6	32583829	32583830	rs9271349	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs9271349-A	NR	4E-9		0.0217606	[0.015-0.029] unit decrease	Affymetrix [321169] (imputed)	N
833	chr6	32583879	32583880	rs112430285	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	6p21.32	NR	rs112430285-?	NR	8E-12				Affymetrix [~ 8270000] (imputed)	N
833	chr6	32583978	32583979	rs33915496	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	89,266 East Asian ancestry individuals	NA	6p21.32	NR	rs33915496-A	0.543315	1E-16		0.039594	[0.03-0.049] SD units increase	Affymetrix, Illumina [16289068] (imputed)	N
833	chr6	32583992	32583993	rs28383228	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs28383228-A	0.135	4E-18	(Interleukin-21, IL21.7124.18.3)	0.34	[0.26-0.42] unit increase	Affymetrix [10572788] (imputed)	N
833	chr6	32583992	32583993	rs28383228	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs28383228-A	0.135	3E-35	(Ubiquitin carboxyl-terminal hydrolase 25, USP25.9215.117.3)	0.48	[0.4-0.56] unit increase	Affymetrix [10572788] (imputed)	N
833	chr6	32583992	32583993	rs28383228	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs28383228-A	0.135	2E-16	(MHC class I polypeptide-related sequence B, MICB.5102.55.3)	0.32	[0.24-0.4] unit increase	Affymetrix [10572788] (imputed)	N
833	chr6	32584152	32584153	rs28383233	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	6p21.32		rs28383233-G	0.418462	4E-14		0.029595	[0.022-0.037] unit increase	NR [11722792] (imputed)	N
833	chr6	32584190	32584191	rs34077986	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs34077986-C	NR	5E-11		0.0189538	[0.013-0.025] unit increase	Affymetrix [321169] (imputed)	N
833	chr6	32584312	32584313	rs33932178	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	95,717 East Asian ancestry individuals	NA	6p21.32		rs33932178-G	0.449956	3E-22		0.0431265	[0.034-0.052] unit decrease	Illumina [13471431] (imputed)	N
833	chr6	32584318	32584319	rs28383241	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	6p21.32		rs28383241-A	NR	9E-40		0.0249	[0.021-0.029] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
833	chr6	32584370	32584371	rs34694416	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Basal cell carcinoma	31,787 European ancestry cases, 619,351 European ancestry controls	NA	6p21.32	HLA-DQA1	rs34694416-T	0.116415	8E-23		1.14	[1.11-1.16]	Affymetrix, Illumina [up to 9061544] (imputed)	N
833	chr6	32584580	32584581	rs73730372	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR++ monocyte %monocyte	3,595 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs73730372-T	0.20013	2E-10		0.2818	[0.2-0.37] unit decrease	Illumina [18380843] (imputed)	N
833	chr6	32584580	32584581	rs73730372	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs73730372-?	NR	9E-26				Affymetrix [~ 8270000] (imputed)	N
833	chr6	32584580	32584581	rs73730372	27285765	Chen D	2016-06-07	Oncotarget	Pooled analysis of genome-wide association studies of cervical intraepithelial neoplasia 3 (CIN3) identifies a new susceptibility locus.	Cervical cancer	1,553 Swedish ancestry cervical intraepithelial neoplasia grade 3 cases, 81 Swedish ancestry cervical cancer cases,  4,442 Swedish ancestry controls	827 Swedish ancestry cervical intraepithelial neoplasia grade 3 cases, 123 Swedish ancestry cervical cancer cases, 1,715 European ancestry controls	6p21.32	intergenic	rs73730372-?		3E-19		1.67	[1.49-1.85]	Illumina [5471179]	N
833	chr6	32584608	32584609	rs3129757	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Cathepsin L1 levels	21,758 European ancestry individuals	9,173 individuals	6p21.32		rs3129757-A	0.15	9E-17		0.0997	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
833	chr6	32584738	32584739	rs28752520	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs28752520-C	0.227	4E-23	(Complement C4, C4A.C4B.4481.34.2)	0.31	[0.25-0.37] unit increase	Affymetrix [10572788] (imputed)	N
833	chr6	32584771	32584772	rs28752523	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	6p21.32		rs28752523-C	0.806174	2E-12		0.0353026	[0.025-0.045] unit increase	NR [11722792] (imputed)	N
833	chr6	32584771	32584772	rs28752523	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to omega-3 fatty acids	115,006 European ancestry individuals	NA	6p21.32		rs28752523-C	0.806174	4E-8		0.0275581	[0.018-0.037] unit increase	NR [11722792] (imputed)	N
833	chr6	32584771	32584772	rs28752523	33204752	Butler-Laporte G	2020-09-24	Open Forum Infect Dis	Genetic Determinants of Antibody-Mediated Immune Responses to Infectious Diseases Agents: A Genome-Wide and HLA Association Study.	Human herpes virus 6 IE1A antibody levels	6,968 White British ancestry individuals	NA	6p21.32	HLA-DQA1	rs28752523-C	0.806	8E-9		0.12	[0.079-0.161] unit decrease	NR [25472218] (imputed)	N
833	chr6	32584879	32584880	rs73730377	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FAS	5,367 Icelandic ancestry individuals	NA	6p21.32		rs73730377-G	0.179	9E-13		0.172154	[0.12-0.22] unit increase	Illumina [7506463] (imputed)	N
833	chr6	32584879	32584880	rs73730377	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.32	NR	rs73730377-?	NR	2E-23				Affymetrix [~ 8270000] (imputed)	N
833	chr6	32585067	32585068	rs28752534	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	6p21.32		rs28752534-T	0.699585	3E-10		0.0269354	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
833	chr6	32585067	32585068	rs28752534	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	6p21.32		rs28752534-T	0.699588	5E-10		0.0255499	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
833	chr6	32585067	32585068	rs28752534	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p21.32	HLA-DRB3	rs28752534-T	0.64	2E-30		1.11	[1.1-1.13] unit increase	Illumina [at least 560000] (imputed)	N
833	chr6	32585268	32585269	rs200675567	31577861	Dai J	2019-10-31	Int J Cancer	Genome-wide association study of INDELs identified four novel susceptibility loci associated with lung cancer risk.	Lung cancer	20,871 European ancestry cases, 15,971 European ancestry controls, 2,331 Chinese ancestry cases, 3,077 Chinese ancestry controls	NA	6p21.32	HLA-DQA1	rs200675567-D	0.11	4E-7		0.9	[0.86-0.96]	Illumina [484196]	N
833	chr6	32585637	32585638	rs28383254	29903748	Debiec H	2018-06-14	J Am Soc Nephrol	Transethnic, Genome-Wide Analysis Reveals Immune-Related Risk Alleles and Phenotypic Correlates in Pediatric Steroid-Sensitive Nephrotic Syndrome.	Childhood steroid-sensitive nephrotic syndrome	85 Maghrebian cases, 261 Maghrebian controls	NA	6p21.32	HLA-DRB1, HLA-DQA1	rs28383254-?	NR	3E-8		5.7	[3.1-10.6]	Illumina [at least 7529344] (imputed)	N
833	chr6	32585900	32585901	rs28383264	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs28383264-T	0.201	1E-12	(Hepatocyte nuclear factor 4-alpha, HNF4A.10041.3.3)	0.24	[0.18-0.3] unit increase	Affymetrix [10572788] (imputed)	N
833	chr6	32585966	32585967	rs3104412	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	6p21.32	NR	rs3104412-?	NR	1E-142	(conditional)			Affymetrix [15688218] (imputed)	N
833	chr6	32586018	32586019	rs3135005	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	6p21.32	NR	rs3135005-?	NR	2E-9		5.995	NR z score decrease	Illumina [at least 830937] (imputed)	N
833	chr6	32586157	32586158	rs70993900	30230522	Zhang S	2018-09-19	Br J Dermatol	Subtype-Specific Inherited Predisposition to Pemphigus in Chinese Population.	Pemphigus vulgaris	255 Chinese ancestry cases, 501 Chinese ancestry controls	110 Chinese ancestry cases, 604 Chinese ancestry controls	6p21.32	NR	rs70993900-?	0.09	1E-45		18.57	NR	Affymetrix [416397]	N
833	chr6	32586157	32586158	rs70993900	30230522	Zhang S	2018-09-19	Br J Dermatol	Subtype-Specific Inherited Predisposition to Pemphigus in Chinese Population.	Pemphigus	350 Chinese ancestry cases, 501 Chinese ancestry controls	146 Chinese ancestry cases, 604 Chinese ancestry controls	6p21.32	NR	rs70993900-?	0.09	1E-43		10.92	NR	Affymetrix [416397]	N
833	chr6	32586235	32586236	rs11751024	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	6p21.32		rs11751024-C	0.601399	2E-18		0.0366905	[0.028-0.045] unit decrease	NR [11722792] (imputed)	N
833	chr6	32586235	32586236	rs11751024	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	CAG-882 sp003486385 abundance in stool	5,959 Finnish ancestry individuals	NA	6p21.32		rs11751024-A	0.400705	5E-8		0.104999	[0.067-0.143] unit increase	Illumina [7980478] (imputed)	N
833	chr6	32586235	32586236	rs11751024	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TGM3	5,368 Icelandic ancestry individuals	NA	6p21.32		rs11751024-A	0.3876	6E-13		0.141161	[0.1-0.18] unit decrease	Illumina [7506463] (imputed)	N
833	chr6	32586235	32586236	rs11751024	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.32	NR	rs11751024-?	NR	5E-24				Affymetrix [~ 8270000] (imputed)	N
833	chr6	32586235	32586236	rs11751024	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs11751024-?	NR	9E-35				Affymetrix [~ 8270000] (imputed)	N
833	chr6	32586375	32586376	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	VLDL cholesterol levels	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	7E-27		0.0483058	[0.039-0.057] unit decrease	NR [11722792] (imputed)	N
833	chr6	32586375	32586376	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total phospholipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	3E-13		0.0313476	[0.023-0.04] unit decrease	NR [11722792] (imputed)	N
833	chr6	32586375	32586376	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small LDL	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	9E-20		0.0410279	[0.032-0.05] unit decrease	NR [11722792] (imputed)	N
833	chr6	32586375	32586376	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium VLDL	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	2E-27		0.0484871	[0.04-0.057] unit decrease	NR [11722792] (imputed)	N
833	chr6	32586375	32586376	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium LDL	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	8E-20		0.0412131	[0.032-0.05] unit decrease	NR [11722792] (imputed)	N
833	chr6	32586375	32586376	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	2E-19		0.0399601	[0.031-0.049] unit decrease	NR [11722792] (imputed)	N
833	chr6	32586375	32586376	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in LDL	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	9E-17		0.0374103	[0.029-0.046] unit decrease	NR [11722792] (imputed)	N
833	chr6	32586375	32586376	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total free cholesterol levels	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	8E-17		0.036746	[0.028-0.045] unit decrease	NR [11722792] (imputed)	N
833	chr6	32586375	32586376	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol minus HDL-C levels	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	4E-18		0.038935	[0.03-0.048] unit decrease	NR [11722792] (imputed)	N
833	chr6	32586375	32586376	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Polyunsaturated fatty acid levels	115,006 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665908	4E-22		0.0423547	[0.034-0.051] unit decrease	NR [11722792] (imputed)	N
833	chr6	32586375	32586376	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	2E-28		0.0496534	[0.041-0.058] unit decrease	NR [11722792] (imputed)	N
833	chr6	32586375	32586376	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small LDL	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	1E-16		0.0372035	[0.028-0.046] unit decrease	NR [11722792] (imputed)	N
833	chr6	32586375	32586376	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium VLDL	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	4E-27		0.0485352	[0.04-0.057] unit decrease	NR [11722792] (imputed)	N
833	chr6	32586375	32586376	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium LDL	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	2E-18		0.0396392	[0.031-0.048] unit decrease	NR [11722792] (imputed)	N
833	chr6	32586375	32586376	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-6 fatty acid levels	115,006 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665908	3E-21		0.0416405	[0.033-0.05] unit decrease	NR [11722792] (imputed)	N
833	chr6	32586375	32586376	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Linoleic acid levels	115,006 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665908	1E-22		0.0433006	[0.035-0.052] unit decrease	NR [11722792] (imputed)	N
833	chr6	32586375	32586376	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	9E-26		0.0473496	[0.039-0.056] unit decrease	NR [11722792] (imputed)	N
833	chr6	32586375	32586376	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	8E-26		0.0473724	[0.039-0.056] unit decrease	NR [11722792] (imputed)	N
833	chr6	32586375	32586376	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small LDL particles	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	2E-20		0.0419422	[0.033-0.051] unit decrease	NR [11722792] (imputed)	N
833	chr6	32586375	32586376	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium VLDL particles	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	4E-27		0.0485075	[0.04-0.057] unit decrease	NR [11722792] (imputed)	N
833	chr6	32586375	32586376	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium LDL particles	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	6E-19		0.0402296	[0.031-0.049] unit decrease	NR [11722792] (imputed)	N
833	chr6	32586375	32586376	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of VLDL particles	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	7E-27		0.0480395	[0.039-0.057] unit decrease	NR [11722792] (imputed)	N
833	chr6	32586375	32586376	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	8E-28		0.0491721	[0.04-0.058] unit decrease	NR [11722792] (imputed)	N
833	chr6	32586375	32586376	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small LDL	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	6E-22		0.043478	[0.035-0.052] unit decrease	NR [11722792] (imputed)	N
833	chr6	32586375	32586376	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium LDL	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	2E-21		0.0430313	[0.034-0.052] unit decrease	NR [11722792] (imputed)	N
833	chr6	32586375	32586376	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in LDL	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	6E-18		0.0389019	[0.03-0.048] unit decrease	NR [11722792] (imputed)	N
833	chr6	32586375	32586376	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	2E-27		0.0488991	[0.04-0.058] unit decrease	NR [11722792] (imputed)	N
833	chr6	32586375	32586376	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small LDL	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	6E-19		0.0401589	[0.031-0.049] unit decrease	NR [11722792] (imputed)	N
833	chr6	32586375	32586376	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	3E-19		0.0405703	[0.032-0.049] unit decrease	NR [11722792] (imputed)	N
833	chr6	32586381	32586382	rs61126090	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Terminally Differentiated CD4-CD8- T cell Absolute Count	3,395 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs61126090-G	0.19907	1E-12		0.2671	[0.19-0.34] unit decrease	Illumina [18332267] (imputed)	N
833	chr6	32586382	32586383	rs28383283	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Terminally Differentiated CD4-CD8- T cell %T cell	3,427 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs28383283-T	0.2651	1E-9		0.2109	[0.14-0.28] unit decrease	Illumina [18349913] (imputed)	N
833	chr6	32586754	32586755	rs28383307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large HDL	115,082 European ancestry individuals	NA	6p21.32		rs28383307-C	0.805689	2E-9		0.0282931	[0.019-0.037] unit increase	NR [11722792] (imputed)	N
833	chr6	32586754	32586755	rs28383307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large HDL	115,082 European ancestry individuals	NA	6p21.32		rs28383307-C	0.805689	3E-9		0.0277214	[0.019-0.037] unit increase	NR [11722792] (imputed)	N
833	chr6	32586754	32586755	rs28383307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	6p21.32		rs28383307-C	0.805689	8E-11		0.0304025	[0.021-0.04] unit increase	NR [11722792] (imputed)	N
833	chr6	32586754	32586755	rs28383307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	6p21.32		rs28383307-C	0.805689	6E-9		0.026858	[0.018-0.036] unit increase	NR [11722792] (imputed)	N
833	chr6	32586754	32586755	rs28383307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	6p21.32		rs28383307-C	0.805689	2E-11		0.0315135	[0.022-0.041] unit increase	NR [11722792] (imputed)	N
833	chr6	32586781	32586782	rs28383308	33768542	Liu Y	2021-03-26	Clin Pharmacol Ther	Class II HLA Variants Associate with Risk of Pegaspargase Hypersensitivity.	Asparaginase hypersensitivity in acute lymphoblastic leukemia	2,290 European ancestry individuals, 310 African ancestry individuals, 798 Native American individuals, 112 Asian ancestry individuals, 387 individuals	NA	6p21.32	HLA-DQA1	rs28383308-T	NR	5E-14		1.95	[NR]	Affymetrix, Illumina [NR] (imputed)	N
833	chr6	32586793	32586794	rs9271365	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hypothyroidism	30,155 European ancestry cases, 379,986 European ancestry controls, 1,114 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	6p21.32		rs9271365-G	NR	5E-123		0.2484	[0.23-0.27] unit increase	Affymetrix, Illumina [25801083] (imputed)	N
833	chr6	32586793	32586794	rs9271365	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hashimoto thyroiditis	15,654 European ancestry cases, 379,986 European ancestry controls, 537 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	6p21.32		rs9271365-G	NR	1E-39		0.2531	[0.22-0.29] unit increase	Affymetrix, Illumina [25797652] (imputed)	N
833	chr6	32586793	32586794	rs9271365	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	6p21.32	NR	rs9271365-?	NR	7E-35				Affymetrix [~ 8270000] (imputed)	N
833	chr6	32586830	32586831	rs13191810	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium VLDL	115,082 European ancestry individuals	NA	6p21.32		rs13191810-C	0.687691	5E-25		0.0445033	[0.036-0.053] unit decrease	NR [11722792] (imputed)	N
833	chr6	32586830	32586831	rs13191810	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs13191810-C	0.687691	2E-21		0.040583	[0.032-0.049] unit decrease	NR [11722792] (imputed)	N
833	chr6	32586830	32586831	rs13191810	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs13191810-C	0.687691	3E-22		0.0414982	[0.033-0.05] unit decrease	NR [11722792] (imputed)	N
833	chr6	32586830	32586831	rs13191810	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs13191810-C	0.687691	5E-24		0.0433674	[0.035-0.052] unit decrease	NR [11722792] (imputed)	N
833	chr6	32586830	32586831	rs13191810	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs13191810-C	0.687691	3E-16		0.0350026	[0.027-0.043] unit decrease	NR [11722792] (imputed)	N
833	chr6	32586830	32586831	rs13191810	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	6p21.32		rs13191810-C	0.687723	6E-17		0.0344759	[0.026-0.043] unit decrease	NR [11722792] (imputed)	N
833	chr6	32586830	32586831	rs13191810	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs13191810-C	0.687691	1E-22		0.0419227	[0.034-0.05] unit decrease	NR [11722792] (imputed)	N
833	chr6	32586830	32586831	rs13191810	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs13191810-C	0.687691	3E-24		0.0434772	[0.035-0.052] unit decrease	NR [11722792] (imputed)	N
833	chr6	32586830	32586831	rs13191810	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs13191810-C	0.687691	7E-17		0.0354956	[0.027-0.044] unit decrease	NR [11722792] (imputed)	N
833	chr6	32586830	32586831	rs13191810	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-3 fatty acid levels	115,006 European ancestry individuals	NA	6p21.32		rs13191810-C	0.687723	5E-14		0.0321812	[0.024-0.041] unit decrease	NR [11722792] (imputed)	N
833	chr6	32586830	32586831	rs13191810	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs13191810-C	0.687691	5E-25		0.0444045	[0.036-0.053] unit decrease	NR [11722792] (imputed)	N
833	chr6	32586830	32586831	rs13191810	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large VLDL particles	115,082 European ancestry individuals	NA	6p21.32		rs13191810-C	0.687691	2E-22		0.0414621	[0.033-0.05] unit decrease	NR [11722792] (imputed)	N
833	chr6	32586830	32586831	rs13191810	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large VLDL particles	115,082 European ancestry individuals	NA	6p21.32		rs13191810-C	0.687691	9E-24		0.0430671	[0.035-0.051] unit decrease	NR [11722792] (imputed)	N
833	chr6	32586830	32586831	rs13191810	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of chylomicrons and extremely large VLDL particles	115,082 European ancestry individuals	NA	6p21.32		rs13191810-C	0.687691	2E-16		0.0351965	[0.027-0.044] unit decrease	NR [11722792] (imputed)	N
833	chr6	32586830	32586831	rs13191810	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	6p21.32		rs13191810-C	0.687691	1E-8		0.0223672	[0.015-0.03] unit increase	NR [11722792] (imputed)	N
833	chr6	32586830	32586831	rs13191810	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for VLDL particles	115,082 European ancestry individuals	NA	6p21.32		rs13191810-C	0.687691	4E-18		0.0359074	[0.028-0.044] unit decrease	NR [11722792] (imputed)	N
833	chr6	32586830	32586831	rs13191810	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.32	Intergenic	rs13191810-T	NR	1E-6	(men)	0.0240553	[0.014-0.034] unit decrease	Illumina [13520550] (imputed)	N
833	chr6	32586853	32586854	rs9271366	26278503	Huang C	2015-11-01	Gastroenterology	Characterization of genetic loci that affect susceptibility to inflammatory bowel diseases in African Americans.	Ulcerative colitis	361 African American cases, 1,797 African American controls	NA	6p21.32	HLA-DQA1	rs9271366-A	NR	7E-6		1.627	[1.315-2.013]	Illumina [130241]	N
833	chr6	32586853	32586854	rs9271366	23850713	Yang SK	2013-07-14	Gut	Genome-wide association study of Crohn's disease in Koreans revealed three new susceptibility loci and common attributes of genetic susceptibility across ethnic populations.	Crohn's disease	532 Korean ancestry cases, 733 Korean ancestry controls	1,779 Korean ancestry cases, 1,709 Korean ancestry controls	6p21.32	HLA-DRA, HLA-DRB5, BTNL2, HLA-DRB1, HLA-DQA1	rs9271366-A	0.888	5E-12		1.66	[1.44-1.92]	Illumina [5664371] (imputed)	N
833	chr6	32586853	32586854	rs9271366	23511034	Yang SK	2013-04-01	Inflamm Bowel Dis	Genome-wide association study of ulcerative colitis in Koreans suggests extensive overlapping of genetic susceptibility with Caucasians.	Ulcerative colitis	388 Korean ancestry cases, 739 Korean ancestry controls	417 Korean ancestry cases, 732 Korean ancestry controls	6p21.32	HLA-DRB1, HLA-DQA1	rs9271366-G	0.11	1E-18		2.1	[1.78-2.48]	Illumina [581060]	N
833	chr6	32586853	32586854	rs9271366	21699788	Okada Y	2011-06-20	Gastroenterology	HLA-Cw*1202-B*5201-DRB1*1502 haplotype increases risk for ulcerative colitis but reduces risk for Crohn's disease.	Ulcerative colitis or Crohn's disease	372 Japanese ancestry Crohn's disease cases, 372 Japanese ancestry ulcerative colitis cases	607 Japanese ancestry Crohn's disease cases, 376 Japanese ancestry ulcerative colitis cases	6p21.32	MHC, HLA-DRB1	rs9271366-C	0.21	2E-70	(UC vs. CD)	4.44	[3.74-5.27]	Illumina [461368]	N
833	chr6	32586853	32586854	rs9271366	20694011	Ferreira RC	2010-08-08	Nat Genet	Association of IFIH1 and other autoimmunity risk alleles with selective IgA deficiency.	Immunoglobulin A	430 European ancestry cases, 1,090 European ancestry controls	342 European ancestry cases, 886 European ancestry controls	6p21.32	HLA-DRB1	rs9271366-?	0.85	3E-33		7.69	[5.26-11.11]	Illumina [2057134] (imputed)	N
833	chr6	32586853	32586854	rs9271366	20598377	Nischwitz S	2010-06-30	J Neuroimmunol	Evidence for VAV2 and ZNF433 as susceptibility genes for multiple sclerosis.	Multiple sclerosis	590 European ancestry cases, 825 European ancestry controls	NA	6p21.32	DQA1	rs9271366-G	NR	4E-17		2.62	[2.09-3.28]	Illumina [~ 300000]	N
833	chr6	32586853	32586854	rs9271366	19838195	Gateva V	2009-11-01	Nat Genet	A large-scale replication study identifies TNIP1, PRDM1, JAZF1, UHRF1BP1 and IL10 as risk loci for systemic lupus erythematosus.	Systemic lupus erythematosus	1,310 European ancestry cases, 7,859 European ancestry controls	1,963 European ancestry cases, 4,329 European ancestry controls	6p21.32	HLA-DRB1	rs9271366-G	0.16	1E-7		1.26	[1.18-1.36]	Illumina [~ 2100000] (imputed)	N
833	chr6	32586853	32586854	rs9271366	19525955	Bahlo M	2009-06-14	Nat Genet	Genome-wide association study identifies new multiple sclerosis susceptibility loci on chromosomes 12 and 20.	Multiple sclerosis	1,618 European ancestry cases, 3,413 European ancestry controls	2,256 European ancestry cases, 2,310 European ancestry controls	6p21.32	HLA-DRB1	rs9271366-G	0.15	7E-184		2.78	[NR]	Illumina [302098]	N
833	chr6	32586907	32586908	rs9271367	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on plasmacytoid Dendritic Cell	2,872 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9271367-A	0.85909	2E-29		0.5463	[0.45-0.64] unit decrease	Illumina [17926607] (imputed)	N
833	chr6	32586907	32586908	rs9271367	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on myeloid Dendritic Cell	2,872 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9271367-A	0.85909	3E-35		0.5882	[0.5-0.68] unit decrease	Illumina [17926605] (imputed)	N
833	chr6	32586907	32586908	rs9271367	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on Dendritic Cell	2,871 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9271367-A	0.85909	4E-32		0.5586	[0.47-0.65] unit decrease	Illumina [17926566] (imputed)	N
833	chr6	32586907	32586908	rs9271367	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on CD33- HLA DR+	1,635 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9271367-A	0.85909	2E-12		0.4146	[0.3-0.53] unit decrease	Illumina [16999305] (imputed)	N
833	chr6	32586997	32586998	rs607929	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	6p21.32	intergenic	rs607929-G	0.4428	4E-9		0.02092051	[0.014-0.028] unit increase	Affymetrix [~ 2500000] (imputed)	N
833	chr6	32587066	32587067	rs9271375	35074870	Chia R	2022-02-01	Proc Natl Acad Sci U S A	Identification of genetic risk loci and prioritization of genes and pathways for myasthenia gravis: a genome-wide association study.	Late-onset myasthenia gravis	1,278 European ancestry cases, 33,652 European ancestry controls	308 European ancestry cases, 7,056 European ancestry controls	6p21.32		rs9271375-A	0.481	2E-19		0.66	[0.6-0.72]	Illumina [24006246] (imputed)	N
833	chr6	32587066	32587067	rs9271375	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Urolithiasis	6,223 European ancestry cases, 482,123 European ancestry controls, 11,699 East Asian ancestry cases, 167,027 East Asian ancestry controls	NA	6p21.32		rs9271375-A	NR	5E-11		0.0785	[0.055-0.102] unit decrease	Affymetrix, Illumina [25845211] (imputed)	N
833	chr6	32587156	32587157	rs28688825	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	6p21.32	NR	rs28688825-?	NR	1E-28				Affymetrix [~ 8270000] (imputed)	N
833	chr6	32587156	32587157	rs28688825	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs28688825-?	NR	9E-24				Affymetrix [~ 8270000] (imputed)	N
833	chr6	32587156	32587157	rs28688825	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	6p21.32	AGER, AGPAT1, BRD2, BTNL2, C6orf10, EGFL8, GPSM3, HCG23, HLA-DMA, HLA-DMB, HLA-DOB, HLA-DQA1, HLA-DQA2, HLA-DQB1, HLA-DQB2, HLA-DRA, HLA-DRB1, HLA-DRB5, HLA-DRB6, LOC100294145, MIR6721, MIR6833, NOTCH4, PBX2, PPT2-EGFL8, PSMB8, PSMB9, RNF5, RNF5P1, TAP1, TAP2, TAPSAR1	rs28688825-A	0.883307	5E-31		1.1379826	[1.12-1.16]	Affymetrix [8274727] (imputed)	N
833	chr6	32587212	32587213	rs28383314	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	6p21.32		rs28383314-T	0.377043	8E-21		0.0374324	[0.03-0.045] unit decrease	NR [11722792] (imputed)	N
833	chr6	32587212	32587213	rs28383314	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	6p21.32		rs28383314-T	0.377036	7E-12		0.0274798	[0.02-0.035] unit decrease	NR [11722792] (imputed)	N
833	chr6	32587212	32587213	rs28383314	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs28383314-T	0.377036	2E-25		0.043251	[0.035-0.051] unit decrease	NR [11722792] (imputed)	N
833	chr6	32587212	32587213	rs28383314	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large HDL	115,082 European ancestry individuals	NA	6p21.32		rs28383314-T	0.377036	6E-13		0.0298794	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
833	chr6	32587212	32587213	rs28383314	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs28383314-T	0.377036	2E-27		0.0445853	[0.037-0.053] unit decrease	NR [11722792] (imputed)	N
833	chr6	32587212	32587213	rs28383314	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small HDL	115,082 European ancestry individuals	NA	6p21.32		rs28383314-T	0.377036	4E-24		0.0415957	[0.034-0.05] unit decrease	NR [11722792] (imputed)	N
833	chr6	32587212	32587213	rs28383314	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium HDL	115,082 European ancestry individuals	NA	6p21.32		rs28383314-T	0.377036	2E-21		0.0397131	[0.032-0.048] unit decrease	NR [11722792] (imputed)	N
833	chr6	32587212	32587213	rs28383314	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large HDL	115,082 European ancestry individuals	NA	6p21.32		rs28383314-T	0.377036	4E-8		0.0221728	[0.014-0.03] unit decrease	NR [11722792] (imputed)	N
833	chr6	32587212	32587213	rs28383314	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in VLDL	115,082 European ancestry individuals	NA	6p21.32		rs28383314-T	0.377036	9E-23		0.0401294	[0.032-0.048] unit decrease	NR [11722792] (imputed)	N
833	chr6	32587212	32587213	rs28383314	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in HDL	115,082 European ancestry individuals	NA	6p21.32		rs28383314-T	0.377036	8E-21		0.0389843	[0.031-0.047] unit decrease	NR [11722792] (imputed)	N
833	chr6	32587212	32587213	rs28383314	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total triglycerides levels	115,082 European ancestry individuals	NA	6p21.32		rs28383314-T	0.377036	8E-24		0.0412963	[0.033-0.049] unit decrease	NR [11722792] (imputed)	N
833	chr6	32587212	32587213	rs28383314	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small HDL	115,082 European ancestry individuals	NA	6p21.32		rs28383314-T	0.377036	5E-22		0.0409595	[0.033-0.049] unit decrease	NR [11722792] (imputed)	N
833	chr6	32587212	32587213	rs28383314	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total fatty acid levels	115,006 European ancestry individuals	NA	6p21.32		rs28383314-T	0.377051	4E-25		0.0434702	[0.035-0.052] unit decrease	NR [11722792] (imputed)	N
833	chr6	32587212	32587213	rs28383314	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Saturated fatty acid levels	115,006 European ancestry individuals	NA	6p21.32		rs28383314-T	0.377051	4E-20		0.0385885	[0.03-0.047] unit decrease	NR [11722792] (imputed)	N
833	chr6	32587212	32587213	rs28383314	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6p21.32		rs28383314-T	0.377036	9E-13		0.0304107	[0.022-0.039] unit increase	NR [11722792] (imputed)	N
833	chr6	32587212	32587213	rs28383314	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	6p21.32		rs28383314-T	0.377036	1E-11		0.0288571	[0.021-0.037] unit increase	NR [11722792] (imputed)	N
833	chr6	32587212	32587213	rs28383314	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small HDL	115,082 European ancestry individuals	NA	6p21.32		rs28383314-T	0.377036	8E-22		0.0405037	[0.032-0.049] unit decrease	NR [11722792] (imputed)	N
833	chr6	32587212	32587213	rs28383314	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6p21.32		rs28383314-T	0.377036	6E-17		0.0342966	[0.026-0.042] unit increase	NR [11722792] (imputed)	N
833	chr6	32587212	32587213	rs28383314	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	6p21.32		rs28383314-C	NR	4E-59		0.0343	[0.03-0.038] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
833	chr6	32587212	32587213	rs28383314	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	6p21.32		rs28383314-C	NR	9E-101		0.0363	[0.033-0.04] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
833	chr6	32587212	32587213	rs28383314	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.32		rs28383314-T	0.375	6E-103				Affymetrix [10369434] (imputed)	N
833	chr6	32587212	32587213	rs28383314	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DQA1	rs28383314-T	NR	2E-12		0.0225613	[0.016-0.029] unit decrease	Affymetrix [323858] (imputed)	N
833	chr6	32587212	32587213	rs28383314	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	HLA-DQA1	rs28383314-T	NR	4E-11		0.0212936	[0.015-0.028] unit decrease	Affymetrix [127266] (imputed)	N
833	chr6	32587212	32587213	rs28383314	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DQA1	rs28383314-T	NR	5E-19		0.0281171	[0.022-0.034] unit increase	Affymetrix [323123] (imputed)	N
833	chr6	32587212	32587213	rs28383314	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs28383314-T	NR	1E-20		0.027344	[0.022-0.033] unit decrease	Affymetrix [321169] (imputed)	N
833	chr6	32587212	32587213	rs28383314	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p21.32	NR	rs28383314-C	0.637389	2E-194				Affymetrix, Illumina [19872809] (imputed)	N
833	chr6	32587212	32587213	rs28383314	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	6p21.32	NR	rs28383314-C	0.624131	6E-199		0.061635	[0.058-0.066] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
833	chr6	32587212	32587213	rs28383314	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	6p21.32	HLA-DQA1	rs28383314-T	0.375891	4E-76		0.0378536	[0.034-0.042] unit decrease	Affymetrix [NR] (imputed)	N
833	chr6	32587212	32587213	rs28383314	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	6p21.32	LINC00336	rs28383314-?	NR	4E-49		0.0398	[0.035-0.045] unit decrease	Affymetrix [5701386] (imputed)	N
833	chr6	32587212	32587213	rs28383314	30643255	Kristjansson RP	2019-01-14	Nat Genet	A loss-of-function variant in ALOX15 protects against nasal polyps and chronic rhinosinusitis.	Nasal polyps	86 European ancestry whole-genome sequenced cases, 4,280 European ancestry cases, 13,941 European ancestry whole-genome sequenced controls, 700,740 European ancestry controls	NA	6p21.32	intergenic	rs28383314-C	0.630	5E-8		1.14	[1.09-1.19]	Affymetrix, Illumina [up to 37123566] (imputed)	N
833	chr6	32587212	32587213	rs28383314	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	6p21.32	HLA-DQA1	rs28383314-T	0.377	3E-9		0.086	[0.059-0.113] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
833	chr6	32587212	32587213	rs28383314	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	6p21.32	intergenic	rs28383314-C	0.6172	9E-64		0.06028895	[0.053-0.067] unit increase	Affymetrix [~ 2500000] (imputed)	N
833	chr6	32587212	32587213	rs28383314	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	6p21.32	intergenic	rs28383314-C	0.6171	7E-27		0.03829286	[0.031-0.045] unit increase	Affymetrix [~ 2500000] (imputed)	N
833	chr6	32587212	32587213	rs28383314	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	6p21.32	intergenic	rs28383314-C	0.6172	1E-60		0.05870737	[0.052-0.066] unit increase	Affymetrix [~ 2500000] (imputed)	N
833	chr6	32587278	32587279	rs144934262	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on CD33+ HLA DR+ CD14-	1,579 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs144934262-T	0.05991	2E-10		0.5304	[0.37-0.69] unit increase	Illumina [16961968] (imputed)	N
833	chr6	32587456	32587457	rs9271393	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Peripheral artery disease	7,114 European ancestry cases, 475,964 European ancestry controls, 4,112 East Asian ancestry cases, 173,601 East Asian ancestry controls	NA	6p21.32		rs9271393-C	NR	2E-8		0.116	[0.075-0.157] unit increase	Affymetrix, Illumina [25844651] (imputed)	N
833	chr6	32587524	32587525	rs9271401	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs9271401-G	0.245	9E-21	(Complement C4, C4A.C4B.4481.34.2)	0.28	[0.22-0.34] unit decrease	Affymetrix [10572788] (imputed)	N
833	chr6	32587524	32587525	rs9271401	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs9271401-G	0.245	5E-21	(cAMP-specific 3',5'-cyclic phosphodiesterase 4D, PDE4D.5255.22.3)	0.28	[0.22-0.34] unit decrease	Affymetrix [10572788] (imputed)	N
833	chr6	32587524	32587525	rs9271401	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs9271401-G	0.245	1E-24	(Glutamate receptor 4, GRIA4.10760.107.3)	0.3	[0.24-0.36] unit decrease	Affymetrix [10572788] (imputed)	N
833	chr6	32587587	32587588	rs9271406	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RPL30	5,357 Icelandic ancestry individuals	NA	6p21.32		rs9271406-G	0.4339	4E-12		0.126569	[0.091-0.162] unit increase	Illumina [7506463] (imputed)	N
833	chr6	32587587	32587588	rs9271406	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	6p21.32		rs9271406-?	NR	2E-8		0.00512675	[0.0033-0.0069] unit decrease	NR [NR]	N
833	chr6	32587587	32587588	rs9271406	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs9271406-A	NR	2E-24		0.0290677	[0.023-0.035] unit decrease	Affymetrix [321169] (imputed)	N
833	chr6	32587587	32587588	rs9271406	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6p21.32	NR	rs9271406-G	0.497785	7E-25		0.024019469	[0.019-0.029] unit increase	Affymetrix [93095623] (imputed)	N
833	chr6	32587858	32587859	rs9271421	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	HLA-DQA1	rs9271421-C	0.861	5E-29	(GDH/6PGL endoplasmic bifunctional protein, H6PD.7161.25.3)	0.39	[0.31-0.47] unit decrease	Affymetrix [10572788] (imputed)	N
833	chr6	32587984	32587985	rs9271429	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	Systemic lupus erythematosus	1,639 East Asian ancestry cases, 2,410 East Asian ancestry controls	NA			rs9271429-G	NR	2E-11		0.2667	[0.19-0.34] unit decrease	Illumina [NR] (imputed)	N
833	chr6	32588030	32588031	rs9271431	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs9271431-A	NR	2E-14		0.0217731	[0.016-0.027] unit increase	Affymetrix [319769] (imputed)	N
833	chr6	32588030	32588031	rs9271431	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs9271431-A	NR	8E-14		0.0213218	[0.016-0.027] unit increase	Affymetrix [319769] (imputed)	N
833	chr6	32588629	32588630	rs9271469	34212547	An J	2021-07-01	Allergy Asthma Immunol Res	Genome-Wide Association Study of Korean Asthmatics: A Comparison With UK Asthmatics.	Adult asthma	1,386 Korean ancestry cases, 5,205 Korean ancestry controls	NA	6p21.32		rs9271469-C	0.28	4E-8		1.33	[1.2-1.48]	Affymetrix [4922160] (imputed)	N
833	chr6	32588712	32588713	rs76815088	35074870	Chia R	2022-02-01	Proc Natl Acad Sci U S A	Identification of genetic risk loci and prioritization of genes and pathways for myasthenia gravis: a genome-wide association study.	Myasthenia gravis	1,873 European ancestry cases, 36,370 European ancestry controls	7,412 European ancestry individuals	6p21.32		rs76815088-C	0.061	6E-16		0.42	[0.34-0.52]	Illumina [24006246] (imputed)	N
833	chr6	32589216	32589217	rs34104805	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.32	NR	rs34104805-?	NR	1E-13				Affymetrix [~ 8270000] (imputed)	N
833	chr6	32589216	32589217	rs34104805	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs34104805-?	NR	4E-17				Affymetrix [~ 8270000] (imputed)	N
833	chr6	32589265	32589266	rs35597309	25129146	Wu C	2014-08-17	Nat Genet	Joint analysis of three genome-wide association studies of esophageal squamous cell carcinoma in Chinese populations.	Esophageal squamous cell carcinoma	5,337 Han Chinese ancestry cases, 5,787 Han Chinese ancestry controls	9,654 Han Chinese ancestry cases, 10,058 Han Chinese ancestry  controls	6p21.32	HLA	rs35597309-A	0.072	1E-7		1.19	[1.12-1.27]	Affymetrix, Illumina [7556215] (imputed)	N
833	chr6	32589299	32589300	rs9271500	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	6p21.32		rs9271500-C	0.54239	1E-9		0.0250109	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
833	chr6	32589362	32589363	rs73728611	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs73728611-A	0.878781	2E-8		0.0350323	[0.023-0.047] unit decrease	NR [11722792] (imputed)	N
833	chr6	32589362	32589363	rs73728611	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs73728611-A	0.878781	2E-8		0.0353342	[0.023-0.048] unit decrease	NR [11722792] (imputed)	N
833	chr6	32589362	32589363	rs73728611	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs73728611-A	0.878781	5E-9		0.0365405	[0.024-0.049] unit decrease	NR [11722792] (imputed)	N
833	chr6	32589362	32589363	rs73728611	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	6p21.32		rs73728611-A	0.878767	4E-9		0.0354428	[0.024-0.047] unit decrease	NR [11722792] (imputed)	N
833	chr6	32589362	32589363	rs73728611	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs73728611-A	0.878781	5E-8		0.0343432	[0.022-0.047] unit decrease	NR [11722792] (imputed)	N
833	chr6	32589362	32589363	rs73728611	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs73728611-A	0.878781	3E-8		0.0346994	[0.022-0.047] unit decrease	NR [11722792] (imputed)	N
833	chr6	32589362	32589363	rs73728611	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large VLDL particles	115,082 European ancestry individuals	NA	6p21.32		rs73728611-A	0.878781	3E-8		0.0346989	[0.022-0.047] unit decrease	NR [11722792] (imputed)	N
833	chr6	32589362	32589363	rs73728611	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large VLDL particles	115,082 European ancestry individuals	NA	6p21.32		rs73728611-A	0.878781	5E-8		0.0343334	[0.022-0.047] unit decrease	NR [11722792] (imputed)	N
833	chr6	32589362	32589363	rs73728611	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of chylomicrons and extremely large VLDL particles	115,082 European ancestry individuals	NA	6p21.32		rs73728611-A	0.878781	2E-8		0.0352602	[0.023-0.048] unit decrease	NR [11722792] (imputed)	N
833	chr6	32589362	32589363	rs73728611	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	6p21.32	HLA-DQA1	rs73728611-A	0.8765	1E-9		0.003	[0.0022-0.0038] unit increase	Affymetrix [15275733] (imputed)	N
833	chr6	32589977	32589978	rs9271536	33204752	Butler-Laporte G	2020-09-24	Open Forum Infect Dis	Genetic Determinants of Antibody-Mediated Immune Responses to Infectious Diseases Agents: A Genome-Wide and HLA Association Study.	Epstein-Barr virus VCA p18 antibody levels	8,518 White British ancestry individuals	NA	6p21.32	HLA-DQA1	rs9271536-A	0.180	7E-21		0.19	[0.15-0.23] unit increase	NR [25472218] (imputed)	N
833	chr6	32589977	32589978	rs9271536	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Terminally Differentiated CD4+ T cell %T cell	3,427 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9271536-T	0.77188	3E-18		0.291	[0.23-0.36] unit decrease	Illumina [18349913] (imputed)	N
833	chr6	32589977	32589978	rs9271536	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Terminally Differentiated CD4+ T cell %CD4+ T cell	3,427 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9271536-T	0.77188	8E-17		0.2806	[0.21-0.35] unit decrease	Illumina [18349913] (imputed)	N
833	chr6	32589977	32589978	rs9271536	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	SSC-A on CD4+ T cell	3,113 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9271536-T	0.76919	9E-14		0.2591	[0.19-0.33] unit decrease	Illumina [18030777] (imputed)	N
833	chr6	32589977	32589978	rs9271536	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Naive CD4+ T cell %CD4+ T cell	3,427 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9271536-T	0.77188	4E-12		0.2324	[0.17-0.3] unit increase	Illumina [18349913] (imputed)	N
833	chr6	32589977	32589978	rs9271536	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Effector Memory CD4+ T cell %T cell	3,427 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9271536-T	0.77188	3E-12		0.2368	[0.17-0.3] unit decrease	Illumina [18349913] (imputed)	N
833	chr6	32589981	32589982	rs9271537	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Terminally Differentiated CD4+ T cell Absolute Count	3,395 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9271537-T	0.6246700000000001	2E-9		0.1866	[0.13-0.25] unit decrease	Illumina [18332267] (imputed)	N
833	chr6	32590027	32590028	rs9271539	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p21.32	HLA-DRB1, HLA-DQA1	rs9271539-?	0.56	2E-7	(Turkish)	1.6393442	[1.35-1.96]	Illumina [up to 547389]	N
833	chr6	32590158	32590159	rs9271547	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	HLA-DQA2	rs9271547-A	0.551	6E-80	(HLA class II histocompatibility antigen, DQ alpha 2 chain, HLA.DQA2.7757.5.3)	0.45	[0.41-0.49] unit increase	Affymetrix [10572788] (imputed)	N
833	chr6	32590239	32590240	rs74995702	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs affecting bone structure and mineralization)	6,143 East Asian ancestry cases, 172,583 East Asian ancestry controls	NA	6p21.32		rs74995702-G	0.152630075	8E-16		0.21422668	[0.16-0.27] unit increase	Illumina [13429980] (imputed)	N
833	chr6	32590323	32590324	rs9271556	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	6p21.32		rs9271556-T	0.355911	1E-10		0.0285997	[0.02-0.037] unit decrease	NR [11722792] (imputed)	N
833	chr6	32590500	32590501	rs9271573	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small LDL	115,082 European ancestry individuals	NA	6p21.32		rs9271573-A	0.406337	9E-24		0.0408933	[0.033-0.049] unit decrease	NR [11722792] (imputed)	N
833	chr6	32590500	32590501	rs9271573	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium LDL	115,082 European ancestry individuals	NA	6p21.32		rs9271573-A	0.406337	6E-23		0.0404102	[0.032-0.048] unit decrease	NR [11722792] (imputed)	N
833	chr6	32590500	32590501	rs9271573	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large LDL	115,082 European ancestry individuals	NA	6p21.32		rs9271573-A	0.406337	6E-20		0.0376072	[0.03-0.046] unit decrease	NR [11722792] (imputed)	N
833	chr6	32590500	32590501	rs9271573	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in LDL	115,082 European ancestry individuals	NA	6p21.32		rs9271573-A	0.406337	1E-21		0.0393213	[0.031-0.047] unit decrease	NR [11722792] (imputed)	N
833	chr6	32590500	32590501	rs9271573	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to monounsaturated fatty acids	115,006 European ancestry individuals	NA	6p21.32		rs9271573-A	0.406357	1E-12		0.0285962	[0.021-0.036] unit increase	NR [11722792] (imputed)	N
833	chr6	32590500	32590501	rs9271573	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Monounsaturated fatty acid levels	115,006 European ancestry individuals	NA	6p21.32		rs9271573-A	0.406357	4E-25		0.0428694	[0.035-0.051] unit decrease	NR [11722792] (imputed)	N
833	chr6	32590500	32590501	rs9271573	32231244	Xie J	2020-03-30	Nat Commun	The genetic architecture of membranous nephropathy and its potential to improve non-invasive diagnosis.	Membranous nephropathy	2,150 European ancestry cases, 5,829 European ancestry controls, 1,612 East Asian ancestry cases, 1,970 East Asian ancestry controls	826 Chinese ancestry cases, 1,239 Chinese ancestry controls	6p21.32	HLA	rs9271573-A	NR	3E-154		2.41	[2.26-2.57]	Illumina [~ 7000000] (imputed)	N
833	chr6	32590500	32590501	rs9271573	32231244	Xie J	2020-03-30	Nat Commun	The genetic architecture of membranous nephropathy and its potential to improve non-invasive diagnosis.	Membranous nephropathy	2,150 European ancestry cases, 5,829 European ancestry controls	NA	6p21.32	HLA	rs9271573-A	0.44	2E-60		2.06	[1.89-2.25]	Illumina [~ 7000000] (imputed)	N
833	chr6	32590500	32590501	rs9271573	32231244	Xie J	2020-03-30	Nat Commun	The genetic architecture of membranous nephropathy and its potential to improve non-invasive diagnosis.	Membranous nephropathy	1,612 East Asian ancestry cases, 1,970 East Asian ancestry controls	NA	6p21.32	HLA	rs9271573-A	0.35	4E-102		2.97	[2.69-3.28]	Illumina [~ 7000000] (imputed)	N
833	chr6	32590500	32590501	rs9271573	28076899	Taylor KE	2017-01-11	Arthritis Rheumatol	Genome-Wide Association Analysis Reveals Genetic Heterogeneity of Sjogren's Syndrome According to Ancestry.	Sjogren's syndrome	585 European ancestry cases, up to 51 African ancestry cases, up to 164 Hispanic/Native american cases, up to 570 Asian ancestry cases, up to 59 cases, 1,546 European ancestry controls, 495 African ancestry controls, 237 Hispanic/Native American controls, 306 Asian ancestry controls, 148 controls.	NA	6p21.32	HLA-DQA1, HLA-DQB1, HLA-DRB1	rs9271573-?		3E-42		2.02	[1.82-2.23]	Illumina [1444884]	N
833	chr6	32590500	32590501	rs9271573	28076899	Taylor KE	2017-01-11	Arthritis Rheumatol	Genome-Wide Association Analysis Reveals Genetic Heterogeneity of Sjogren's Syndrome According to Ancestry.	Sjogren's syndrome	585 European ancestry cases, 1,546 European ancestry controls	NA	6p21.32	HLA-DQA1, HLA-DQB1, HLA-DRB1, HLA-DQA2	rs9271573-?		3E-34		2.29	[2.01-2.62]	Illumina [1444884]	N
833	chr6	32590623	32590624	rs2395225	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs2395225-C	NR	3E-11		0.0204906	[0.014-0.027] unit decrease	Affymetrix [321169] (imputed)	N
833	chr6	32590634	32590635	rs9271578	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs9271578-A	NR	2E-24		0.0287397	[0.023-0.034] unit decrease	Affymetrix [319769] (imputed)	N
833	chr6	32590634	32590635	rs9271578	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs9271578-A	NR	3E-23		0.0280541	[0.023-0.034] unit decrease	Affymetrix [319769] (imputed)	N
833	chr6	32590634	32590635	rs9271578	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	6p21.32		rs9271578-T	0.501806	3E-49		0.037933793	[0.033-0.043] unit increase	Affymetrix [93095623] (imputed)	N
833	chr6	32590636	32590637	rs9271579	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic sinusitis	7,529 European ancestry cases, 444,966 European ancestry controls, 4,617 East Asian ancestry cases, 152,226 East Asian ancestry controls	NA	6p21.32		rs9271579-A	NR	4E-36		0.1984	[0.17-0.23] unit increase	Affymetrix, Illumina [25838895] (imputed)	N
833	chr6	32590640	32590641	rs9271580	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Nasal polyps	5,093 European ancestry cases, 444,966 European ancestry controls, 160 East Asian ancestry cases, 151,846 East Asian ancestry controls	NA	6p21.32		rs9271580-G	NR	2E-40		0.352	[0.3-0.4] unit increase	Affymetrix, Illumina [25837843] (imputed)	N
833	chr6	32590721	32590722	rs17533090	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs17533090-T	0.22	5E-9		4.5	[3.42-5.91]	Illumina [NR] (imputed)	N
833	chr6	32590734	32590735	rs35062987	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	6p21.32	intergenic	rs35062987-T	0.2102	2E-39		0.0418	[0.036-0.048] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
833	chr6	32590767	32590768	rs34831921	32678081	Timmers PRHJ	2020-07-16	Nat Commun	Multivariate genomic scan implicates novel loci and haem metabolism in human ageing.	Aging traits (healthspan, parental lifespan or longevity) (multivariate analysis)	at least 837,415 European ancestry individuals	NA	6p21.32	HLA-DRB1, HLA-DQA1	rs34831921-A	0.1	6E-13				NR [7320282]	N
833	chr6	32590767	32590768	rs34831921	29030599	Joshi PK	2017-10-13	Nat Commun	Genome-wide meta-analysis associates HLA-DQA1/DRB1 and LPA and lifestyle factors with human longevity.	Parental lifespan	up to 586,626 European ancestry individuals, up to 19,433 African ancestry individuals	NA	6p21.32	HLA-DQA1, HLA-DRB1	rs34831921-A	0.09	4E-8	(EA)	0.6	years increase	Affymetrix, Illumina [at least 13643373] (imputed)	N
833	chr6	32590878	32590879	rs9271585	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	6p21.32	HLA-DQA1	rs9271585-A	0.4121	3E-7	(East Asian)	0.03	[0.019-0.041] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
833	chr6	32590878	32590879	rs9271585	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	6p21.32	HLA-DQA1	rs9271585-A	0.3329	7E-12		0.0249	[0.018-0.032] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
833	chr6	32590878	32590879	rs9271585	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	6p21.32	NR	rs9271585-A	0.3502	8E-8	(men)	0.0311	[0.02-0.042] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
833	chr6	32590898	32590899	rs9271586	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.32		rs9271586-G	0.495	6E-115				Affymetrix [10369434] (imputed)	N
833	chr6	32590924	32590925	rs3129763	21779181	Gorlova O	2011-07-14	PLoS Genet	Identification of novel genetic markers associated with clinical phenotypes of systemic sclerosis through a genome-wide association strategy.	Systemic sclerosis	2,296 European ancestry cases, 5,172 European ancestry controls	3,175 European ancestry cases, 4,210 European ancestry controls	6p21.32	HLA-DRB1, HLA-DQA1	rs3129763-?	0.25	1E-11	(ATA positive)	1.65	[1.42-1.91]	Illumina [NR] (imputed)	N
833	chr6	32590952	32590953	rs9271588	31879220	Lin GW	2019-12-23	Lancet Oncol	Genetic risk of extranodal natural killer T-cell lymphoma: a genome-wide association study in multiple populations.	Extranodal natural killer T-cell lymphoma (nasal type)	700 Han Chinese ancestry cases, 7,752 Han Chinese ancestry controls	717 East Asian ancestry cases, 12,650 East Asian ancestry controls	6p21.32	HLA-DRB1	rs9271588-C	0.4	9E-26		1.53	[1.41-1.65]	Illumina [3892410] (imputed)	N
833	chr6	32590952	32590953	rs9271588	31301374	Noguchi E	2019-07-10	J Allergy Clin Immunol	HLA-DQ and RBFOX1 as susceptibility genes for an outbreak of hydrolyzed wheat allergy.	Hydrolysed wheat protein allergy	452 Japanese ancestry cases, 2,700 Japaneses ancestry controls	45 Japanese ancestry cases, 326 Japaneses ancestry controls	6p21.32	NR	rs9271588-G	0.523	1E-26		2.3	[1.98-2.70]	Illumina [6575663] (imputed)	N
833	chr6	32590952	32590953	rs9271588	31102405	Labreche K	2019-05-17	Neuro Oncol	A genome-wide association study identifies susceptibility loci for primary central nervous system lymphoma at 6p25.3 and 3p22.1: a LOC network study.	Primary central nervous system lymphoma	475 European ancestry cases, 1,134 European ancestry controls	NA	6p21.32	NR	rs9271588-?	NR	2E-6		1.45	[1.25-1.68]	Illumina [> 10000000] (imputed)	N
833	chr6	32590952	32590953	rs9271588	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	6p21.32	intergenic	rs9271588-C	0.5051	4E-66		0.06142442	[0.054-0.068] unit increase	Affymetrix [~ 2500000] (imputed)	N
833	chr6	32590952	32590953	rs9271588	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	6p21.32	intergenic	rs9271588-C	0.5051	2E-58		0.0576552	[0.051-0.065] unit increase	Affymetrix [~ 2500000] (imputed)	N
833	chr6	32590952	32590953	rs9271588	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	6p21.32	intergenic	rs9271588-C	0.5051	1E-58		0.05764791	[0.051-0.065] unit increase	Affymetrix [~ 2500000] (imputed)	N
833	chr6	32590952	32590953	rs9271588	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	6p21.32	intergenic	rs9271588-C	0.5051	9E-68		0.06247162	[0.055-0.07] unit increase	Affymetrix [~ 2500000] (imputed)	N
833	chr6	32590952	32590953	rs9271588	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	6p21.32	intergenic	rs9271588-C	0.5051	2E-66		0.06164672	[0.055-0.069] unit increase	Affymetrix [~ 2500000] (imputed)	N
833	chr6	32590952	32590953	rs9271588	24097066	Li Y	2013-10-06	Nat Genet	A genome-wide association study in Han Chinese identifies a susceptibility locus for primary Sjogren's syndrome at 7q11.23.	Sjogren's syndrome	542 Han Chinese ancestry cases, 1,050 Han Chinese ancestry controls	1,303 Han Chinese ancestry cases, 2,727 Han Chinese ancestry controls	6p21.32	HLA-DRB1, HLA-DQA1, c6orf10, BTNL2, HLA-DRA, HLA-DRB5, HLA-DRB6	rs9271588-T	0.532	9E-37		1.75	[1.59-1.89]	Affymetrix [556134]	N
833	chr6	32591057	32591058	rs17599077	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs17599077-C	0.19	2E-8		4.08	[3.13-5.32]	Illumina [NR] (imputed)	N
833	chr6	32591197	32591198	rs9271593	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs9271593-C	NR	4E-12		0.0198725	[0.014-0.025] unit increase	Affymetrix [321016] (imputed)	N
833	chr6	32591247	32591248	rs34967069	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Tumor necrosis factor receptor superfamily member 6 levels	21,758 European ancestry individuals	9,173 individuals	6p21.32		rs34967069-T	0.12	3E-20		0.1381	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
833	chr6	32591247	32591248	rs34967069	30642433	Timmers PR	2019-01-15	Elife	Genomics of 1 million parent lifespans implicates novel pathways and common diseases and distinguishes survival chances.	Parental lifespan	at least 500,193 European ancestry offspring	NA	6p21.32	HLA-DQA1	rs34967069-T	0.07	4E-9		0.5613	[0.37-0.75] years increase	NR [up to 9000000] (imputed)	N
833	chr6	32591290	32591291	rs9271597	30674883	Jin Y	2019-01-23	Nat Commun	Early-onset autoimmune vitiligo associated with an enhancer variant haplotype that upregulates class II HLA expression.	Vitiligo (late onset)	1,467 European ancestry cases, 19,156 European ancestry controls	977 European ancestry cases, 727 European ancestry controls	6p21.32	NR	rs9271597-A	NR	4E-34		1.63	[1.55-1.71]	NR [up to 494043] (imputed)	N
833	chr6	32591290	32591291	rs9271597	30674883	Jin Y	2019-01-23	Nat Commun	Early-onset autoimmune vitiligo associated with an enhancer variant haplotype that upregulates class II HLA expression.	Vitiligo (early onset)	704 European ancestry cases, 9,031 European ancestry controls	375 European ancestry cases, 1,455 European ancestry controls	6p21.32	NR	rs9271597-A	NR	2E-40		2.23	[2.11-2.35]	NR [up to 494043] (imputed)	N
833	chr6	32591290	32591291	rs9271597	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	Factor VIII levels	25,897 European ancestry individuals, 4,500 African American individuals, 773 Asian ancestry individuals, 1,440 Hispanic individuals	NA	6p21.32	HLA-DQA1	rs9271597-A	0.42	6E-6	(EA)	0.0137	[0.0084-0.019] unit decrease	Affymetrix, Illumina [13887196] (imputed)	N
833	chr6	32591290	32591291	rs9271597	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	Factor VIII levels	25,897 European ancestry individuals, 4,500 African American individuals, 773 Asian ancestry individuals, 1,440 Hispanic individuals	NA	6p21.32	HLA-DQA1	rs9271597-A	0.41	1E-8		0.0152	[0.0099-0.0205] unit decrease	Affymetrix, Illumina [13887196] (imputed)	N
833	chr6	32591290	32591291	rs9271597	27723757	Jin Y	2016-11-01	Nat Genet	Genome-wide association studies of autoimmune vitiligo identify 23 new risk loci and highlight key pathways and regulatory variants.	Vitiligo	2,853 European ancestry cases and 37,405 European ancestry controls	1,827 European ancestry cases and 2,181 European ancestry controls	6p21.32	HLA-DRB1, HLA-DQA1	rs9271597-A	0.4269	3E-89		1.772	NR	Illumina [8966411] (imputed)	N
833	chr6	32591313	32591313	rs144158892	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	6p21.32	HLA-DQA1	rs144158892-ATCT	0.504957	2E-12		0.015783602	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
833	chr6	32591427	32591428	rs3129765	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	FSC-A on CD4+ T cell	3,113 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs3129765-G	0.75653	1E-10		0.2158	[0.15-0.28] unit decrease	Illumina [18030777] (imputed)	N
833	chr6	32591447	32591448	rs9271605	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	6p21.32		rs9271605-A	0.35118	1E-6		0.034564	[0.021-0.049] unit increase	Affymetrix [15580782] (imputed)	N
833	chr6	32591468	32591469	rs112396255	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs112396255-G	0.22	5E-9		4.5	[3.42-5.91]	Illumina [NR] (imputed)	N
833	chr6	32591566	32591567	rs73728618	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs73728618-T	NR	6E-33		1.481	[1.389-1.58]	Affymetrix [7846216] (imputed)	N
833	chr6	32591587	32591588	rs9271608	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	up to 92,771 European ancestry males, up to 113,387 European ancestry females	NA	6p21.32	HLA-DQA1	rs9271608-G	0.22	2E-17		0.042	[0.032-0.052] unit increase	Affymetrix, Illumina, Perlegen [2437193] (imputed)	N
833	chr6	32591608	32591609	rs9271611	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	6p21.32	NR	rs9271611-G	0.41	5E-19		1.16	[1.12-1.2]	Illumina [8468885] (imputed)	N
833	chr6	32591608	32591609	rs9271611	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Keratinocyte cancer (MTAG)	at least 18,538 European ancestry cases, at least 340,302 European ancestry controls	NA	6p21.32	HLA-DQA1	rs9271611-G	0.379011	2E-22		1.09	[1.07-1.11]	Affymetrix [7600000] (imputed)	N
833	chr6	32591844	32591845	rs9271622	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	T cell Absolute Count	3,653 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9271622-A	0.7302	2E-10		0.2154	[0.15-0.28] unit increase	Illumina [18427377] (imputed)	N
833	chr6	32591975	32591976	rs9271629	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Lymphocyte Absolute Count	3,653 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9271629-A	0.71717	2E-8		0.1945	[0.13-0.26] unit increase	Illumina [18427377] (imputed)	N
833	chr6	32592199	32592200	rs9271640	25616667	Goris A	2015-01-22	Brain	Genetic variants are major determinants of CSF antibody levels in multiple sclerosis.	Oligoclonal band status in multiple sclerosis	2,232 European ancestry OCB positive individuals, 275 European ancestry OCB negative individuals, 439 OCB positive individuals, 80 OCB negative individuals	3,026 OCB positive individuals, 452 OCB negative individuals	6p21.32	HLA-DRB1	rs9271640-A	NR	5E-12		1.56	[1.38-1.77]	NR [485522]	N
833	chr6	32592199	32592200	rs9271640	23472185	Mero IL	2013-03-05	PLoS One	Oligoclonal band status in Scandinavian multiple sclerosis patients is associated with specific genetic risk alleles.	Multiple sclerosis (OCB status)	1,367 European ancestry OCB positive cases, 161 European ancestry OCB negative cases, 428 European ancestry controls	NA	6p21.32	HLA-DQA1	rs9271640-?	NR	2E-20	(OCB positive vs. controls)	2.37	[1.97-2.84]	Illumina [495970]	N
833	chr6	32592218	32592219	rs9271642	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in IDL	115,082 European ancestry individuals	NA	6p21.32		rs9271642-A	0.407279	2E-21		0.0389581	[0.031-0.047] unit decrease	NR [11722792] (imputed)	N
833	chr6	32592218	32592219	rs9271642	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	6p21.32		rs9271642-A	0.407279	9E-12		0.028651	[0.02-0.037] unit increase	NR [11722792] (imputed)	N
833	chr6	32592218	32592219	rs9271642	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6p21.32	HLA-DQA1	rs9271642-G	0.59407	9E-33		0.032831848	[0.027-0.038] unit increase	Affymetrix [93095623] (imputed)	N
833	chr6	32592736	32592737	rs28421666	27436580	Cui Q	2016-07-19	Hum Mol Genet	An extended genome-wide association study identifies novel susceptibility loci for nasopharyngeal carcinoma.	Nasopharyngeal carcinoma	1,583 Southern Chinese ancestry cases, 2,979 Southern Chinese ancestry controls	5,463 Southern Chinese ancestry cases, 5,591 Southern Chinese ancestry controls	6p21.32	NR	rs28421666-?	0.87	1E-10		1.64	[1.43-1.92]	Illumina [463250]	N
833	chr6	32592736	32592737	rs28421666	20512145	Bei JX	2010-05-30	Nat Genet	A genome-wide association study of nasopharyngeal carcinoma identifies three new susceptibility loci.	Nasopharyngeal carcinoma	1,583 Chinese ancestry cases, 1,894 Chinese ancestry controls	3,507 Chinese ancestry cases, 3,063 Chinese ancestry controls, 284  Chinese ancestry trios	6p21.32	HLA-DQ, HLA-DR	rs28421666-?	0.88	2E-18		1.49	[1.37-1.64]	Illumina [464328]	N
833	chr6	32592792	32592793	rs566952760	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs566952760-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
833	chr6	32592795	32592796	rs28383322	29227965	Pilling LC	2017-12-01	Aging (Albany NY)	Human longevity: 25 genetic loci associated in 389,166 UK biobank participants.	Parental longevity (mother's attained age)	412,937 British ancestry individuals	NA	6p21.32	HLA-DQA1, HLA-DRB1	rs28383322-C	NR	4E-9				Affymetrix [11535925] (imputed)	N
833	chr6	32592795	32592796	rs28383322	29227965	Pilling LC	2017-12-01	Aging (Albany NY)	Human longevity: 25 genetic loci associated in 389,166 UK biobank participants.	Parental longevity (combined parental attained age, Martingale residuals)	389,166 British ancestry individuals	NA	6p21.32	HLA-DRB1, HLA-DQA1	rs28383322-C	0.783	5E-11		0.0182	[0.013-0.024] unit increase	Affymetrix [11535925] (imputed)	N
833	chr6	32592832	32592833	rs9271673	33143745	Andlauer TFM	2020-11-04	BMC Med	Treatment- and population-specific genetic risk factors for anti-drug antibodies against interferon-beta: a GWAS.	Neutralising antibody response to interferon beta therapy in multiple sclerosis (antibody titre; IFN?-1a subcutaneous)	up to 2,000 German and Swedish ancestry individuals	up to 757 German and Swedish ancestry individuals	6p21.32		rs9271673-C	NR	2E-28		0.37	[0.31-0.43] unit increase	Illumina [8550834] (imputed)	N
833	chr6	32593079	32593080	rs9271695	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	6p21.32	NR	rs9271695-G	0.8044	1E-13		1.09	[1.07-1.12]	Affymetrix, Illumina [16900397] (imputed)	N
833	chr6	32593143	32593144	rs35508382	31605138	Avitabile M	2019-09-07	Carcinogenesis	Neural crest-derived tumor neuroblastoma and melanoma share 1p13.2 as susceptibility locus that shows a long-range interaction with the SLC16A1 gene.	Neuroblastoma or malignant cutaneous melanoma	2,101 European ancestry neuroblastoma cases, 12,874 European ancestry malignant cutaneous melanoma cases, 27,405 European ancestry controls	2,039 European ancestry neuroblastoma cases, 508 European ancestry malignant cutaneous melanoma cases, 3,469 European ancestry controls	6p21.32	HLA-DRB1, HLA-DQA1	rs35508382-G	0.09124	2E-6		1.1408801	[1.08-1.20]	NR [NR] (imputed)	N
833	chr6	32593197	32593198	rs9271700	33143745	Andlauer TFM	2020-11-04	BMC Med	Treatment- and population-specific genetic risk factors for anti-drug antibodies against interferon-beta: a GWAS.	Neutralising antibody response to interferon beta therapy in multiple sclerosis (presence of antibodies; IFN?-1a subcutaneous)	up to 2,000 German and Swedish ancestry individuals	up to 757 German and Swedish ancestry individuals	6p21.32		rs9271700-G	0.42	5E-27		1.25	[1.01-1.49] unit increase	Illumina [8550834] (imputed)	N
833	chr6	32593198	32593199	rs9271701	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6p21.32	NR	rs9271701-T	0.1795	2E-17		1.067	[1.051-1.082]	Affymetrix [15688218] (imputed)	N
833	chr6	32593243	32593244	rs35324266	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Squamous cell carcinoma	9,674 European ancestry cases, 625,657 European ancestry controls	NA	6p21.32	HLA-DQA1	rs35324266-T	0.041654	4E-9		1.14	[1.10-1.18]	Affymetrix, Illumina [up to 9061544] (imputed)	N
833	chr6	32593464	32593465	rs9271718	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs9271718-T	NR	1E-18		0.0262825	[0.02-0.032] unit increase	Affymetrix [321169] (imputed)	N
833	chr6	32593518	32593519	rs9271721	33143745	Andlauer TFM	2020-11-04	BMC Med	Treatment- and population-specific genetic risk factors for anti-drug antibodies against interferon-beta: a GWAS.	Binding antibody response to interferon beta therapy in multiple sclerosis (antibody levels; IFN?-1a subcutaneous and intramuscular)	up to 2,000 German and Swedish ancestry individuals	up to 757 German and Swedish ancestry individuals	6p21.32		rs9271721-G	NR	5E-22		0.32949224	[0.26-0.4] unit increase	Illumina [8550834] (imputed)	N
833	chr6	32593607	32593608	rs9271730	33766948	Zhu Z	2021-03-25	Eur Respir J	A large-scale genome-wide association analysis of lung function in the Chinese population identifies novel loci and highlights shared genetic etiology with obesity.	Lung function (FVC) and body mass index	up to 100,285 Chinese ancestry individuals	up to 457,756 European ancestry individuals	6p21.32		rs9271730-G	NR	2E-14	(East Asian)			Affymetrix [NR] (imputed)	N
833	chr6	32593607	32593608	rs9271730	33766948	Zhu Z	2021-03-25	Eur Respir J	A large-scale genome-wide association analysis of lung function in the Chinese population identifies novel loci and highlights shared genetic etiology with obesity.	Lung function (FEV1) and body mass index	up to 100,285 Chinese ancestry individuals	up to 457,756 European ancestry individuals	6p21.32		rs9271730-G	NR	8E-15	(East Asian)			Affymetrix [NR] (imputed)	N
833	chr6	32593626	32593627	rs9271732	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs9271732-G	NR	3E-8		0.0190926	[0.012-0.026] unit decrease	Affymetrix [321169] (imputed)	N
833	chr6	32593676	32593677	rs116189786	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	6p21.32	HLA-DRB1, HLA-DQA1	rs116189786-A	NR	5E-33		1.26	[1.22-1.3]	Affymetrix [9000000] (imputed)	N
833	chr6	32593689	32593690	rs9271737	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p21.32	HLA-DQA1	rs9271737-C	0.503238	2E-34		0.036497757	[0.031-0.042] unit increase	Affymetrix [93095623] (imputed)	N
833	chr6	32594027	32594028	rs9271762	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs9271762-G	0.304	9E-18	(Complement C4, C4A.C4B.4481.34.2)	0.25	[0.19-0.31] unit increase	Affymetrix [10572788] (imputed)	N
833	chr6	32594038	32594039	rs28383323	34454985	Sliz E	2021-08-26	J Allergy Clin Immunol	Uniting biobank resources reveals novel genetic pathways modulating susceptibility for atopic dermatitis.	Atopic dermatitis	22,474 European ancestry cases, 774,187 European ancestry controls	NA	6p21.32	NR	rs28383323-a	0.2381	1E-13		0.89	[0.86-0.92]	Affymetrix, Illumina [16201029] (imputed)	N
833	chr6	32594102	32594103	rs34518860	32276964	Shete S	2020-04-10	Cancer Res	A genome-wide association study identifies two novel susceptible regions for squamous cell carcinoma of the head and neck.	Oropharynx cancer	1,144 European ancestry cases, 4,493 European ancestry controls	2,328 European ancestry cases, 3,232 European ancestry controls	6p21.32	HLA-DQA1	rs34518860-G	0.89	3E-17		1.6393442	[1.47-1.85]	Illumina [7858089] (imputed)	N
833	chr6	32594154	32594155	rs532322163	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Rheumatoid arthritis	5,348 East Asian ancestry cases, 173,268 East Asian ancestry controls	NA	6p21.32		rs532322163-T	0.133495442	2E-152		0.8641147	[0.8-0.93] unit increase	Illumina [13429970] (imputed)	N
833	chr6	32594187	32594188	rs9271768	33766948	Zhu Z	2021-03-25	Eur Respir J	A large-scale genome-wide association analysis of lung function in the Chinese population identifies novel loci and highlights shared genetic etiology with obesity.	Lung function (FEV1)	100,285 Chinese ancestry individuals	NA	6p21.32		rs9271768-A	0.61	4E-12		0.032	L increase	Affymetrix [NR] (imputed)	N
833	chr6	32594247	32594248	rs9271770	31089142	Law PJ	2019-05-14	Nat Commun	Association analyses identify 31 new risk loci for colorectal cancer susceptibility.	Colorectal cancer	31,197 European ancestry cases, 61,770 European ancestry controls	NA	6p21.32	NR	rs9271770-A	0.81	4E-8		1.08	[1.05-1.11]	Affymetrix, Illumina [> 10000000] (imputed)	N
833	chr6	32594274	32594275	rs9271772	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Naive CD4+ T cell Absolute Count	3,395 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9271772-A	0.75528	3E-13		0.2514	[0.18-0.32] unit increase	Illumina [18332267] (imputed)	N
833	chr6	32594274	32594275	rs9271772	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD127 on CD45RA+ CD4+ T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9271772-A	0.75569	2E-13		0.2608	[0.19-0.33] unit increase	Illumina [17954496] (imputed)	N
833	chr6	32594308	32594309	rs9271774	28566273	Scott RA	2017-05-31	Diabetes	An Expanded Genome-Wide Association Study of Type 2 Diabetes in Europeans.	Type 2 diabetes	up to 26,676 European ancestry cases, up to 132,532 European ancestry controls	14,545 European ancestry cases, 38,994 European ancestry controls	6p21.32	HLA-DQA1	rs9271774-C	0.74	1E-9		1.09	[1.06-1.12]	Affymetrix, Illumina [at least 11579618] (imputed)	N
833	chr6	32594383	32594384	rs114741460	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	6p21.32		rs114741460-C	0.953428	2E-13		0.0731865	[0.054-0.093] unit decrease	NR [11722792] (imputed)	N
833	chr6	32594383	32594384	rs114741460	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	6p21.32		rs114741460-C	0.953428	3E-8		0.051812	[0.034-0.07] unit increase	NR [11722792] (imputed)	N
833	chr6	32594383	32594384	rs114741460	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in IDL	115,082 European ancestry individuals	NA	6p21.32		rs114741460-C	0.953428	6E-14		0.0768716	[0.057-0.097] unit increase	NR [11722792] (imputed)	N
833	chr6	32594383	32594384	rs114741460	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	6p21.32		rs114741460-C	0.953428	4E-13		0.0724454	[0.053-0.092] unit increase	NR [11722792] (imputed)	N
833	chr6	32594383	32594384	rs114741460	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	6p21.32		rs114741460-C	0.953428	1E-14		0.078791	[0.059-0.099] unit increase	NR [11722792] (imputed)	N
833	chr6	32594601	32594601	rs9281962	33143745	Andlauer TFM	2020-11-04	BMC Med	Treatment- and population-specific genetic risk factors for anti-drug antibodies against interferon-beta: a GWAS.	Binding antibody response to interferon beta therapy in multiple sclerosis (antibody levels; IFN?-1a subcutaneous)	up to 2,000 German and Swedish ancestry individuals	up to 757 German and Swedish ancestry individuals	6p21.32		rs9281962-T	0.44	5E-32		0.5091026	[0.42-0.59] unit increase	Illumina [8550834] (imputed)	N
833	chr6	32594660	32594661	rs116352702	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs116352702-A	0.954	8E-18	(conditional)	0.543	[0.4-0.68]	Illumina [11270530] (imputed)	N
833	chr6	32595096	32595097	rs3104389	32769997	Zhou W	2020-08-07	Nat Commun	GWAS of thyroid stimulating hormone highlights pleiotropic effects and inverse association with thyroid cancer.	Thyroid stimulating hormone levels	119,715 European ancestry individuals	NA	6p21.32	HLA-DRB1, HLA-DQA1	rs3104389-A	0.424293733420786	6E-12		0.0623	[0.045-0.08] SD increase	Illumina [22400000] (imputed)	N
833	chr6	32595116	32595117	rs9271853	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C11orf87	5,363 Icelandic ancestry individuals	NA	6p21.32		rs9271853-T	0.3105	7E-12		0.135762	[0.097-0.175] unit decrease	Illumina [7506463] (imputed)	N
833	chr6	32595222	32595223	rs9271858	23291585	Fakiola M	2013-01-06	Nat Genet	Common variants in the HLA-DRB1-HLA-DQA1 HLA class II region are associated with susceptibility to visceral leishmaniasis.	Leishmaniasis (visceral)	989 Indian ancestry cases, 1,089 Indian ancestry controls, 357 Brazilian ancestry cases, 1,613 Brazilian ancestry unaffected relatives	951 Indian ancestry cases, 990 Indian ancestry controls	6p21.32	HLA, HLA-DRB1, HLA-DQA1	rs9271858-G	0.39	3E-17		1.41	[1.30-1.52]	Illumina [521134]	N
833	chr6	32595275	32595276	rs28362132	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CCL19	5,367 Icelandic ancestry individuals	NA	6p21.32		rs28362132-T	0.0511	8E-36		0.540362	[0.46-0.63] unit increase	Illumina [7506463] (imputed)	N
833	chr6	32595595	32595596	rs9271880	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs9271880-C	NR	2E-10		0.0194381	[0.013-0.025] unit decrease	Affymetrix [319769] (imputed)	N
833	chr6	32595595	32595596	rs9271880	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs9271880-C	NR	5E-10		0.0190783	[0.013-0.025] unit decrease	Affymetrix [319769] (imputed)	N
833	chr6	32596539	32596540	rs9271925	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	6p21.32	HLA-DQA1	rs9271925-G	0.3014	3E-9		0.0266219	[0.018-0.035] unit decrease	Affymetrix [~ 2500000] (imputed)	N
833	chr6	32596723	32596723	rs9281971	33143745	Andlauer TFM	2020-11-04	BMC Med	Treatment- and population-specific genetic risk factors for anti-drug antibodies against interferon-beta: a GWAS.	Neutralising antibody response to interferon beta therapy in multiple sclerosis (presence of antibodies; all treatment preparations)	up to 2,000 German and Swedish ancestry individuals	up to 757 German and Swedish ancestry individuals	6p21.32		rs9281971-TTTTTTT	0.36	2E-17		0.6	[-0.46--0.74] unit decrease	Illumina [8550834] (imputed)	N
833	chr6	32596723	32596723	rs9281971	33143745	Andlauer TFM	2020-11-04	BMC Med	Treatment- and population-specific genetic risk factors for anti-drug antibodies against interferon-beta: a GWAS.	Neutralising antibody response to interferon beta therapy in multiple sclerosis (antibody titre; all treatment preparations)	up to 2,000 German and Swedish ancestry individuals	up to 757 German and Swedish ancestry individuals	6p21.32		rs9281971-TTTTTTT	NR	2E-17		0.16	[-0.12--0.2] unit decrease	Illumina [8550834] (imputed)	N
833	chr6	32597021	32597022	rs3129769	26272072	Jiang X	2015-08-13	Rheumatology (Oxford)	An Immunochip-based interaction study of contrasting interaction effects with smoking in ACPA-positive versus ACPA-negative rheumatoid arthritis.	ACPA-positive rheumatoid arthritis (smoking interaction)	340 European ancestry never-smoker cases, 493 European ancestry ever-smoker cases, 746 European ancestry never-smoker controls, 994 European ancestry ever-smoker controls	187 European ancestry never-smoker cases, 421 European ancestry ever-smoker cases, 461 European ancestry never-smoker controls, 447 European ancestry ever-smoker controls	6p21.32	NR	rs3129769-?	NR	3E-11	(adjusted for HLA shared epitope)	1.724138	[1.33-2.44]	Illumina [133648] (imputed)	N
833	chr6	32597087	32597088	rs13211653	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total esterified cholesterol levels	115,082 European ancestry individuals	NA	6p21.32		rs13211653-A	0.854201	3E-14		0.0430803	[0.032-0.054] unit decrease	NR [11722792] (imputed)	N
833	chr6	32597087	32597088	rs13211653	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol levels	115,082 European ancestry individuals	NA	6p21.32		rs13211653-A	0.854201	4E-15		0.0445562	[0.033-0.056] unit decrease	NR [11722792] (imputed)	N
833	chr6	32597087	32597088	rs13211653	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Sphingomyelin levels	115,006 European ancestry individuals	NA	6p21.32		rs13211653-A	0.854236	6E-9		0.0319032	[0.021-0.043] unit decrease	NR [11722792] (imputed)	N
833	chr6	32597094	32597095	rs9271947	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	6p21.32		rs9271947-T	NR	5E-12		0.0142	[0.01-0.018] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
833	chr6	32597340	32597341	rs114798579	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	6p21.32	NR	rs114798579-?	NR	7E-19	(conditional)			Affymetrix [15688218] (imputed)	N
833	chr6	32597434	32597435	rs140145058	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large LDL	115,082 European ancestry individuals	NA	6p21.32		rs140145058-A	0.864668	1E-15		0.0486929	[0.037-0.061] unit decrease	NR [11722792] (imputed)	N
833	chr6	32597434	32597435	rs140145058	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	LDL cholesterol levels	115,082 European ancestry individuals	NA	6p21.32		rs140145058-A	0.864668	7E-16		0.0494415	[0.037-0.061] unit decrease	NR [11722792] (imputed)	N
833	chr6	32597434	32597435	rs140145058	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large LDL	115,082 European ancestry individuals	NA	6p21.32		rs140145058-A	0.864668	1E-15		0.048909	[0.037-0.061] unit decrease	NR [11722792] (imputed)	N
833	chr6	32597434	32597435	rs140145058	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large LDL	115,082 European ancestry individuals	NA	6p21.32		rs140145058-A	0.864668	2E-15		0.0482138	[0.036-0.06] unit decrease	NR [11722792] (imputed)	N
833	chr6	32598027	32598028	rs146668528	29785011	Zhu Z	2018-05-21	Nat Genet	A genome-wide cross-trait analysis from UK Biobank highlights the shared genetic architecture of asthma and allergic diseases.	Allergic disease (asthma, hay fever or eczema)	25,685 European ancestry allergic diseases cases, 76,768 European ancestry controls	NA	6p21.32	HLA-DQA1	rs146668528-?	NR	5E-12		1.1904762	[1.12-1.25]	Affymetrix [74888535] (imputed)	N
833	chr6	32598089	32598090	rs1281943	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs1281943-C	NR	2E-10		0.0328506	[0.023-0.043] unit increase	Affymetrix [321169] (imputed)	N
833	chr6	32599060	32599061	rs9461780	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	6p21.32	HLA-DQA1	rs9461780-T	0.075286	3E-15		0.033892684	[0.025-0.042] unit increase	Affymetrix [93095623] (imputed)	N
833	chr6	32599070	32599071	rs9272050	33794208	Bowden SJ	2021-04-01	Lancet Oncol	Genetic variation in cervical preinvasive and invasive disease: a genome-wide association study.	Cervical intraepithelial neoplasia grade 3 and invasive cervical cancer	764 European ancestry invasive cervical cancer cases, 4,005 European ancestry cervical intraepithelial neoplasia grade 3 cases, 145,545 European ancestry controls	NA	6p21.32	HLA-DQA1	rs9272050-?	NR	3E-28		1.27	[1.21-1.32]	Affymetrix [9600464] (imputed)	N
833	chr6	32599070	32599071	rs9272050	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cervical cancer	6,563 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs9272050-G	NR	1E-39		1.267	NR	Affymetrix [7846216] (imputed)	N
833	chr6	32599070	32599071	rs9272050	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p21.32	HLA-DRB1	rs9272050-G	0.38	1E-30		1.19	[1.17-1.21] unit increase	Illumina [at least 560000] (imputed)	N
833	chr6	32599486	32599487	rs9272071	33143745	Andlauer TFM	2020-11-04	BMC Med	Treatment- and population-specific genetic risk factors for anti-drug antibodies against interferon-beta: a GWAS.	Binding antibody response to interferon beta therapy in multiple sclerosis (antibody levels; all treatment preparations)	up to 2,000 German and Swedish ancestry individuals	up to 757 German and Swedish ancestry individuals	6p21.32		rs9272071-C	0.32	5E-18		0.22615278	[-0.17--0.28] unit decrease	Illumina [8550834] (imputed)	N
833	chr6	32599511	32599512	rs77559661	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	6p21.32		rs77559661-T	NR	4E-30		0.0301	[0.025-0.035] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
833	chr6	32599998	32599999	rs9272105	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	6p21.32	NR	rs9272105-?	NR	5E-12				Affymetrix [~ 8270000] (imputed)	N
833	chr6	32599998	32599999	rs9272105	22807686	Li S	2012-07-12	PLoS Genet	GWAS identifies novel susceptibility loci on 6p21.32 and 21q21.3 for hepatocellular carcinoma in chronic hepatitis B virus carriers.	Hepatocellular carcinoma	1,538 Han Chinese ancestry HBV-positive HCC cases, 1,465 Han Chinese ancestry chronic HBV carriers	4,431 Han Chinese ancestry HBV-positive HCC cases, 4,725 Han Chinese ancestry chronic HBV carriers	6p21.32	HLA-DRB1, HLA-DQA1	rs9272105-A	0.45	5E-22		1.28	[1.22-1.35]	NR [523663]	N
833	chr6	32599998	32599999	rs9272105	21502966	Weber F	2011-04-19	Pharmacogenomics J	Single-nucleotide polymorphisms in HLA- and non-HLA genes associated with the development of antibodies to interferon-? therapy in multiple sclerosis patients.	Response to interferon beta therapy	178 European ancestry antibody-positive individuals, 184 European ancestry antibody-negative individuals	350 European ancestry antibody-positive individuals, 468 European ancestry antibody-negative individuals	6p21.32	HLA-DRB1, HLA-DQA1	rs9272105-A	0.44	4E-10		0.26	[NR] unit increase	Illumina [~ 317000]	N
833	chr6	32600002	32600003	rs3104376	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	6p21.32	Intergenic	rs3104376-T	NR	2E-28		0.0514741	[0.042-0.061] unit increase	Illumina [13520550] (imputed)	N
833	chr6	32600056	32600057	rs35242582	28029757	Merkel PA	2016-12-28	Arthritis Rheumatol	Identification of Functional and Expression Polymorphisms Associated With Risk for Antineutrophil Cytoplasmic Autoantibody-Associated Vasculitis.	Antineutrophil cytoplasmic antibody-associated vasculitis	1,015 European ancestry granulomatosis with polyangiitis cases, 206 European ancestry microscopic polyangiitis cases, 3,258 European ancestry controls.	541 European ancestry granulomatosis with polyangiitis cases, 30 European ancestry microscopic polyangiitis cases, 1,465 European ancestry controls.	6p21.32	HLA-DQA1	rs35242582-A	0.74	6E-23		1.6	1.46-1.76	Affymetrix [at least 333035] (imputed)	N
833	chr6	32600374	32600375	rs3104373	27386562	Andlauer TF	2016-06-17	Sci Adv	Novel multiple sclerosis susceptibility loci implicated in epigenetic regulation.	Multiple sclerosis	4,888 German ancestry cases, 10,395 German ancestry controls	2,903 Sardinian ancestry cases, 3,323 Sardinian ancestry controls	6p21.32	HLA-DRB1	rs3104373-T		1E-234		2.9	[2.72-3.09]	Illumina [at least 8143088] (imputed)	N
833	chr6	32600403	32600404	rs9272116	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Creatinine levels	110,051 European ancestry individuals	NA	6p21.32		rs9272116-T	0.506915	1E-15		0.0282801	[0.021-0.035] unit decrease	NR [11722792] (imputed)	N
833	chr6	32600584	32600585	rs13214992	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	6p21.32	intergenic	rs13214992-A	0.0562	3E-29		0.1055	[0.087-0.124] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
833	chr6	32600670	32600671	rs9272131	30450575	Hojfeldt SG	2018-11-18	Br J Haematol	Genetic predisposition to PEG-asparaginase hypersensitivity in children treated according to NOPHO ALL2008.	PEG-asparaginase hypersensitivity without enzyme activity in childhood acute lymphoblastic leukaemia	59 European ancestry cases, 772 European ancestry controls	NA	6p21.32	HLA-DQA1, HLA-DQB1, HLA-DRB1	rs9272131-T	0.11	9E-6		3.01	[1.85-4.91]	Illumina [NR]	N
833	chr6	32600802	32600803	rs9272143	28806749	Leo PJ	2017-08-14	PLoS Genet	Defining the genetic susceptibility to cervical neoplasia-A genome-wide association study.	Cervical cancer	2,866 European ancestry cases, 6,481 European ancestry controls	NA	6p21.32	HLA-DRB1	rs9272143-?	NR	5E-15		1.3513513	[NR]	Illumina [10863230] (imputed)	N
833	chr6	32600802	32600803	rs9272143	23482656	Chen D	2013-03-12	J Natl Cancer Inst	Genome-wide association study of susceptibility loci for cervical cancer.	Cervical cancer	1,034 European ancestry cases, 3,948 European ancestry controls	1,140 European ancestry cases, 1,058 European ancestry controls	6p21.32	HLA-DRB1, HLA-DQA1	rs9272143-?	NR	3E-22		1.49	[1.37-1.61]	Illumina [632668]	N
833	chr6	32601018	32601019	rs9272154	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p21.32	NR	rs9272154-?	NR	9E-12		0.0937	[0.067-0.121] unit increase	Illumina [at least 560000] (imputed)	N
833	chr6	32601287	32601288	rs72848251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs72848251-G	0.805325	4E-21		0.0493811	[0.039-0.06] unit decrease	NR [11722792] (imputed)	N
833	chr6	32601287	32601288	rs72848251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Remnant cholesterol (non-HDL, non-LDL -cholesterol)	115,082 European ancestry individuals	NA	6p21.32		rs72848251-G	0.805325	8E-20		0.0484938	[0.038-0.059] unit decrease	NR [11722792] (imputed)	N
833	chr6	32601287	32601288	rs72848251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of apolipoprotein B to apolipoprotein A1 levels	115,082 European ancestry individuals	NA	6p21.32		rs72848251-G	0.805325	6E-19		0.0468108	[0.036-0.057] unit decrease	NR [11722792] (imputed)	N
833	chr6	32601287	32601288	rs72848251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs72848251-G	0.805325	1E-22		0.0513513	[0.041-0.062] unit decrease	NR [11722792] (imputed)	N
833	chr6	32601287	32601288	rs72848251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs72848251-G	0.805325	2E-21		0.0496998	[0.039-0.06] unit decrease	NR [11722792] (imputed)	N
833	chr6	32601287	32601288	rs72848251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very small VLDL particles	115,082 European ancestry individuals	NA	6p21.32		rs72848251-G	0.805325	2E-20		0.048766	[0.038-0.059] unit decrease	NR [11722792] (imputed)	N
833	chr6	32601287	32601288	rs72848251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large LDL particles	115,082 European ancestry individuals	NA	6p21.32		rs72848251-G	0.805325	2E-23		0.0532642	[0.043-0.064] unit decrease	NR [11722792] (imputed)	N
833	chr6	32601287	32601288	rs72848251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of LDL particles	115,082 European ancestry individuals	NA	6p21.32		rs72848251-G	0.805325	2E-22		0.0522239	[0.042-0.063] unit decrease	NR [11722792] (imputed)	N
833	chr6	32601287	32601288	rs72848251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in VLDL	115,082 European ancestry individuals	NA	6p21.32		rs72848251-G	0.805325	4E-26		0.0566218	[0.046-0.067] unit decrease	NR [11722792] (imputed)	N
833	chr6	32601287	32601288	rs72848251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs72848251-G	0.805325	1E-17		0.0444632	[0.034-0.055] unit decrease	NR [11722792] (imputed)	N
833	chr6	32601287	32601288	rs72848251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	6p21.32		rs72848251-G	0.805325	4E-24		0.0541049	[0.044-0.065] unit decrease	NR [11722792] (imputed)	N
833	chr6	32601287	32601288	rs72848251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein B levels	115,082 European ancestry individuals	NA	6p21.32		rs72848251-G	0.805325	4E-22		0.0517157	[0.041-0.062] unit decrease	NR [11722792] (imputed)	N
833	chr6	32601287	32601288	rs72848251	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	6p21.32	HLA-DQA1	rs72848251-G	0.804518	1E-38		0.0349134	[0.03-0.04] unit decrease	Affymetrix [NR] (imputed)	N
833	chr6	32601806	32601807	rs147841808	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in IDL	115,082 European ancestry individuals	NA	6p21.32		rs147841808-C	0.867699	2E-14		0.0459272	[0.034-0.058] unit decrease	NR [11722792] (imputed)	N
833	chr6	32601806	32601807	rs147841808	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large LDL	115,082 European ancestry individuals	NA	6p21.32		rs147841808-C	0.867699	2E-15		0.0492534	[0.037-0.061] unit decrease	NR [11722792] (imputed)	N
833	chr6	32601806	32601807	rs147841808	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in IDL	115,082 European ancestry individuals	NA	6p21.32		rs147841808-C	0.867699	8E-17		0.0499703	[0.038-0.062] unit decrease	NR [11722792] (imputed)	N
833	chr6	32601806	32601807	rs147841808	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small LDL	115,082 European ancestry individuals	NA	6p21.32		rs147841808-C	0.867699	2E-13		0.0454527	[0.033-0.058] unit decrease	NR [11722792] (imputed)	N
833	chr6	32601806	32601807	rs147841808	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large LDL	115,082 European ancestry individuals	NA	6p21.32		rs147841808-C	0.867699	3E-14		0.0463596	[0.034-0.058] unit decrease	NR [11722792] (imputed)	N
833	chr6	32601806	32601807	rs147841808	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in LDL	115,082 European ancestry individuals	NA	6p21.32		rs147841808-C	0.867699	3E-14		0.0468543	[0.035-0.059] unit decrease	NR [11722792] (imputed)	N
833	chr6	32601806	32601807	rs147841808	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in IDL	115,082 European ancestry individuals	NA	6p21.32		rs147841808-C	0.867699	4E-14		0.0455951	[0.034-0.057] unit decrease	NR [11722792] (imputed)	N
833	chr6	32601806	32601807	rs147841808	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Clinical LDL cholesterol levels	115,082 European ancestry individuals	NA	6p21.32		rs147841808-C	0.867699	4E-16		0.0503325	[0.038-0.062] unit decrease	NR [11722792] (imputed)	N
833	chr6	32601806	32601807	rs147841808	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium VLDL	115,082 European ancestry individuals	NA	6p21.32		rs147841808-C	0.867699	7E-22		0.0592176	[0.047-0.071] unit decrease	NR [11722792] (imputed)	N
833	chr6	32601806	32601807	rs147841808	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in IDL	115,082 European ancestry individuals	NA	6p21.32		rs147841808-C	0.867699	2E-12		0.0422918	[0.031-0.054] unit decrease	NR [11722792] (imputed)	N
833	chr6	32601806	32601807	rs147841808	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in IDL	115,082 European ancestry individuals	NA	6p21.32		rs147841808-C	0.867699	5E-13		0.0434275	[0.032-0.055] unit decrease	NR [11722792] (imputed)	N
833	chr6	32601952	32601953	rs553685714	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	6p21.32	HLA-DQA1	rs553685714-G	0.00566900000000004	5E-30		0.24839339	[0.21-0.29] unit increase	Affymetrix [93095623] (imputed)	N
833	chr6	32601952	32601953	rs553685714	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	6p21.32	HLA-DQA1	rs553685714-G	0.005664	1E-34		0.2682929	[0.23-0.31] unit decrease	Affymetrix [93095623] (imputed)	N
833	chr6	32602136	32602137	rs3104371	34536413	Daya M	2021-09-15	J Allergy Clin Immunol	Multi-ethnic genome-wide and HLA association study of total serum IgE.	IgE levels	5,008 African American individuals, 12,908 European ancestry individuals, 3,985 Hispanic individuals	NA	6p21.32		rs3104371-G	0.17	4E-18				Affymetrix, Illumina [NR] (imputed)	N
833	chr6	32602268	32602269	rs9272219	32792643	Romero-Hidalgo S	2020-08-13	Sci Rep	Native American ancestry significantly contributes to neuromyelitis optica susceptibility in the admixed Mexican population.	Neuromyelitis optica	164 Mexican cases, 1,208 Mexican controls	NA	6p21.32	HLA-DQA1	rs9272219-A	0.42	8E-10		2.48	[1.86-3.32]	Illumina [252805]	N
833	chr6	32602268	32602269	rs9272219	19571809	Shi J	2009-07-01	Nature	Common variants on chromosome 6p22.1 are associated with schizophrenia.	Schizophrenia	2,681 European ancestry cases, 2,653 European ancestry controls, 1,286 African American cases, 973 African American controls	5,327 European ancestry cases, 16,424 European ancestry controls	6p21.32	HLA-DQA1	rs9272219-G	0.72	7E-8	(EA)	1.14	[NR]	Affymetrix [up to 843798]	N
833	chr6	32602395	32602396	rs9272226	34212547	An J	2021-07-01	Allergy Asthma Immunol Res	Genome-Wide Association Study of Korean Asthmatics: A Comparison With UK Asthmatics.	Adult asthma	1,386 Korean ancestry cases, 5,205 Korean ancestry controls	NA	6p21.32		rs9272226-C	0.43	6E-7		1.27	[1.16-1.4]	Affymetrix [4922160] (imputed)	N
833	chr6	32602481	32602482	rs3104369	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CXCL2;CXCL3	5,366 Icelandic ancestry individuals	NA	6p21.32		rs3104369-T	0.3681	6E-26		0.203573	[0.17-0.24] unit increase	Illumina [7506463] (imputed)	N
833	chr6	32602481	32602482	rs3104369	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD45RA+ CD8+ T cell Absolute Count	3,395 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs3104369-C	0.7732	1E-9		0.1747	[0.12-0.23] unit increase	Illumina [18332267] (imputed)	N
833	chr6	32602481	32602482	rs3104369	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs3104369-?	NR	1E-11				Affymetrix [~ 8270000] (imputed)	N
833	chr6	32602481	32602482	rs3104369	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Adult onset asthma or type 2 diabetes	33,418 European ancestry asthma cases, 393,186 European ancestry asthma controls, 159,208 European ancestry diabetes cases and controls	NA	6p21.32	NR	rs3104369-?	NR	9E-15				Affymetrix [up to 8270000] (imputed)	N
833	chr6	32602482	32602483	rs17205170	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	6p21.32	HLA-DQA1	rs17205170-?	NR	1E-44		0.0464	[0.041-0.052] unit increase	Affymetrix [5701386] (imputed)	N
833	chr6	32602630	32602631	rs17205212	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	334,468 European ancestry, NR ancestry individuals	NA	6p21.32		rs17205212-?	NR	5E-8				Affymetrix [NR] (imputed)	N
833	chr6	32602665	32602665	rs139299944	33204752	Butler-Laporte G	2020-09-24	Open Forum Infect Dis	Genetic Determinants of Antibody-Mediated Immune Responses to Infectious Diseases Agents: A Genome-Wide and HLA Association Study.	Human herpes virus 7 U14 antibody levels	8,528 White British ancestry individuals	NA	6p21.32	HLA-DQA1	rs139299944-C	0.658	4E-12		0.11	[0.079-0.141] unit increase	NR [25472218] (imputed)	N
833	chr6	32602789	32602790	rs9272242	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4 on Effector Memory CD4+ T cell	2,912 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9272242-C	0.6302	4E-12		0.2215	[0.16-0.28] unit increase	Illumina [17945888] (imputed)	N
833	chr6	32602871	32602872	rs9272245	33794208	Bowden SJ	2021-04-01	Lancet Oncol	Genetic variation in cervical preinvasive and invasive disease: a genome-wide association study.	Cervical intraepithelial neoplasia grade 3	4,005 European ancestry cases, 145,545 European ancestry controls	NA	6p21.32	HLA-DQA1	rs9272245-?	NR	5E-12		1.44	[1.30-1.60]	Affymetrix [9600464] (imputed)	N
833	chr6	32603006	32603007	rs2040406	20453840	Sanna S	2010-05-09	Nat Genet	Variants within the immunoregulatory CBLB gene are associated with multiple sclerosis.	Multiple sclerosis	882 Sardinian cases, 872 Sardinian controls	1,775 Sardinian cases, 2,005 Sardinian controls	6p21.32	HLA-DQB1, HLA-DRB	rs2040406-G	0.26	1E-20		2.05	[NR]	Affymetrix [6607266] (imputed)	N
833	chr6	32603176	32603177	rs28393315	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	6p21.32		rs28393315-A	0.739	9E-22				Affymetrix [10369434] (imputed)	N
833	chr6	32603294	32603295	rs9272263	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DQA1	rs9272263-C	NR	2E-12		0.0278269	[0.02-0.036] unit decrease	Affymetrix [323858] (imputed)	N
833	chr6	32603294	32603295	rs9272263	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	HLA-DQA1	rs9272263-A	NR	6E-10		0.0226602	[0.015-0.03] unit decrease	Affymetrix [127266] (imputed)	N
833	chr6	32603294	32603295	rs9272263	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p21.32	HLA-DQA1	rs9272263-C	NR	2E-8		0.0221565	[0.014-0.03] unit decrease	Affymetrix [323858] (imputed)	N
833	chr6	32603320	32603321	rs62404084	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antihistamines for systemic use)	13,984 European ancestry cases, 137,652 European ancestry controls, 10,163 East Asian ancestry cases, 168,563 East Asian ancestry controls	NA	6p21.32		rs62404084-T	NR	5E-11		0.0852	[0.06-0.11] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
833	chr6	32603320	32603321	rs62404084	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6p21.32	NR	rs62404084-C	0.8069	1E-43		1.1116052	[1.1-1.13]	Affymetrix [15688218] (imputed)	N
833	chr6	32603486	32603487	rs3104367	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Asthma	28,399 European ancestry cases, 128,843 European ancestry controls	NA	6p21.32	HLA-DRB5, HLA-DQA1	rs3104367-?	NR	1E-40		1.1467891	[1.12-1.17]	Illumina [13747813] (imputed)	N
833	chr6	32603659	32603660	rs1391373	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs1391373-C	NR	2E-10		0.0185525	[0.013-0.024] unit decrease	Affymetrix [321016] (imputed)	N
833	chr6	32603797	32603798	rs1391371	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (glucocorticoids)	17,352 European ancestry cases, 188,348 European ancestry controls, 13,102 East Asian ancestry cases, 165,624 East Asian ancestry controls	NA	6p21.32		rs1391371-T	NR	1E-37		0.1229	[0.1-0.14] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
833	chr6	32603797	32603798	rs1391371	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (glucocorticoids)	17,352 European ancestry cases, 188,348 European ancestry controls	NA	6p21.32	HLA-DQA1	rs1391371-T	0.202145	2E-48		0.20412196	[0.18-0.23] unit increase	Affymetrix [7288503] (imputed)	N
833	chr6	32603797	32603798	rs1391371	30643255	Kristjansson RP	2019-01-14	Nat Genet	A loss-of-function variant in ALOX15 protects against nasal polyps and chronic rhinosinusitis.	Nasal polyps	86 European ancestry whole-genome sequenced cases, 4,280 European ancestry cases, 13,941 European ancestry whole-genome sequenced controls, 700,740 European ancestry controls	NA	6p21.32	HLA-DQA1	rs1391371-T	0.195	7E-49		1.47	[1.39-1.54]	Affymetrix, Illumina [up to 37123566] (imputed)	N
833	chr6	32603797	32603798	rs1391371	30643255	Kristjansson RP	2019-01-14	Nat Genet	A loss-of-function variant in ALOX15 protects against nasal polyps and chronic rhinosinusitis.	Chronic rhinosinusitis	251 European ancestry whole-genome sequenced cases, 5,357 European ancestry cases, 13,957 European ancestry whole-genome sequenced controls, 746,129 European ancestry controls	NA	6p21.32	HLA-DQA1	rs1391371-T	0.195	4E-15		1.22	(1.16-1.28)	Affymetrix, Illumina [up to 37123566] (imputed)	N
833	chr6	32603824	32603825	rs3129774	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	6p21.32		rs3129774-C	0.559887	9E-21		0.0390299	[0.031-0.047] unit decrease	NR [11722792] (imputed)	N
833	chr6	32603824	32603825	rs3129774	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs3129774-C	0.55995	2E-20		0.0386367	[0.03-0.047] unit decrease	NR [11722792] (imputed)	N
833	chr6	32603824	32603825	rs3129774	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6p21.32		rs3129774-C	0.55995	2E-20		0.0377974	[0.03-0.046] unit decrease	NR [11722792] (imputed)	N
833	chr6	32603824	32603825	rs3129774	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6p21.32		rs3129774-C	0.55995	7E-20		0.0378012	[0.03-0.046] unit increase	NR [11722792] (imputed)	N
833	chr6	32603824	32603825	rs3129774	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	6p21.32		rs3129774-C	0.559887	2E-21		0.0397338	[0.032-0.048] unit increase	NR [11722792] (imputed)	N
833	chr6	32603824	32603825	rs3129774	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6p21.32		rs3129774-C	0.55995	1E-18		0.0363057	[0.028-0.044] unit increase	NR [11722792] (imputed)	N
833	chr6	32603824	32603825	rs3129774	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	6p21.32		rs3129774-C	0.559887	1E-16		0.0342504	[0.026-0.042] unit increase	NR [11722792] (imputed)	N
833	chr6	32603824	32603825	rs3129774	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs3129774-C	0.55995	8E-20		0.0387931	[0.03-0.047] unit increase	NR [11722792] (imputed)	N
833	chr6	32603824	32603825	rs3129774	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6p21.32		rs3129774-C	0.55995	1E-19		0.0366269	[0.029-0.045] unit increase	NR [11722792] (imputed)	N
833	chr6	32603824	32603825	rs3129774	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	6p21.32		rs3129774-C	0.559954	9E-20		0.0375502	[0.029-0.046] unit increase	NR [11722792] (imputed)	N
833	chr6	32603824	32603825	rs3129774	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	6p21.32		rs3129774-C	0.559887	6E-19		0.0366323	[0.029-0.045] unit increase	NR [11722792] (imputed)	N
833	chr6	32603824	32603825	rs3129774	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs3129774-C	0.55995	8E-21		0.0392074	[0.031-0.047] unit increase	NR [11722792] (imputed)	N
833	chr6	32603824	32603825	rs3129774	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6p21.32		rs3129774-C	0.55995	6E-20		0.0370631	[0.029-0.045] unit increase	NR [11722792] (imputed)	N
833	chr6	32603824	32603825	rs3129774	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	6p21.32		rs3129774-C	0.559954	3E-17		0.0356128	[0.027-0.044] unit increase	NR [11722792] (imputed)	N
833	chr6	32603935	32603936	rs9272309	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	6p21.32	NR	rs9272309-A	0.620099	1E-19		0.0128993	[0.01-0.016] unit increase	Affymetrix [16578495] (imputed)	N
833	chr6	32604371	32604372	rs9272346	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	6p21.32	HLA-DQA1	rs9272346-A	0.61	2E-156				NR [> 9500000] (imputed)	N
833	chr6	32604371	32604372	rs9272346	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (childhood onset)	9,433 British ancestry cases, 318,237 British ancestry controls	NA	6p21.32	NR	rs9272346-A	0.59	4E-37		1.13		Affymetrix [10894596] (imputed)	N
833	chr6	32604371	32604372	rs9272346	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (age of onset)	37,846 British ancestry individuals	NA	6p21.32	NR	rs9272346-A	0.59	7E-8				Affymetrix [10894596] (imputed)	N
833	chr6	32604371	32604372	rs9272346	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (adult onset)	21,564 British ancestry cases, 318,237 British ancestry controls	NA	6p21.32	NR	rs9272346-A	0.59	2E-47		1.13		Affymetrix [10894596] (imputed)	N
833	chr6	32604371	32604372	rs9272346	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls, 2,149 African ancestry cases, 6,055 African ancestry controls, 1,239 Japanese ancestry cases, 3,976 Japanese ancestry controls, 606 Latino cases, 792 Latino controls	NA	6p21.32	HLA-DRB1, HLA-DQA1	rs9272346-A	0.56	6E-24		1.16	[1.12-1.19]	Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
833	chr6	32604371	32604372	rs9272346	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls	NA	6p21.32	HLA-DRB1, HLA-DQA1	rs9272346-A	0.56	2E-28		0.15	[0.13-0.17] unit increase	Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
833	chr6	32604371	32604372	rs9272346	27130862	Sarnowski C	2016-04-06	J Allergy Clin Immunol	Identification of a new locus at 16q12 associated with time to asthma onset.	Asthma (time to onset)	5,462 European ancestry cases, 8,424 European ancestry controls	NA	6p21.32	HLA-DQA1	rs9272346-A	0.59	2E-8		1.13	[1.08-1.17]	Illumina [2387926] (imputed)	N
833	chr6	32604371	32604372	rs9272346	23181788	Lasky-Su J	2012-12-04	Clin Exp Allergy	HLA-DQ strikes again: genome-wide association study further confirms HLA-DQ in the diagnosis of asthma among adults.	Asthma	Up to 1,238 European ancestry cases, up to 2,617 European ancestry controls	Up to 1,837 European ancestry cases, up to 3,803 European ancestry controls, up to 2,806 cases, up to 2,150 controls, up to 603 Costa Rican ancestry cases and their parents	6p21.32	HLA-DQA1	rs9272346-?	NR	2E-8	(Adult)			Affymetrix [455089]	N
833	chr6	32604371	32604372	rs9272346	18978792	Cooper JD	2008-11-02	Nat Genet	Meta-analysis of genome-wide association study data identifies additional type 1 diabetes risk loci.	Type 1 diabetes	3,561 European ancestry cases, 4,646 European ancestry controls	6,225 European ancestry cases, 6,946 European ancestry controls, 3,064 European ancestry trios from 2,828 families	6p21.32	HLA	rs9272346-G	NR	6E-129				Affymetrix [up to 335565]	N
833	chr6	32604371	32604372	rs9272346	17554300	Wellcome Trust Case Control Consortium	2007-06-07	Nature	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Type 1 diabetes	1,963 European ancestry cases, 2,938 European ancestry controls	(see Todd 2007)	6p21.32	MHC	rs9272346-G	0.61	5E-134		5.49	[4.83-6.24]	Affymetrix [469557]	N
833	chr6	32604653	32604654	rs9272371	32737300	Sallah N	2020-07-31	Nat Commun	Distinct genetic architectures and environmental factors associate with host response to the ?2-herpesvirus infections.	Anti-Epstein-Barr virus nuclear antigen (EBNA) IgG levels	4,365 Ugandan ancestry individuals	2,162  European ancestry individuals	6p21.32	HLA-DQA1	rs9272371-C	0.3	4E-44	(Ugandan)	0.36	[0.32-0.40] unit decrease	Illumina [14929118] (imputed)	N
833	chr6	32604653	32604654	rs9272371	29868224	Sallah N	2017-11-27	Glob Health Epidemiol Genom	Whole-genome association study of antibody response to Epstein-Barr virus in an African population: a pilot.	Epstein-Barr virus immune response (multivariate analysis)	1,473 Ugandan ancestry individuals	NA	6p21.32	HLA-DQA1	rs9272371-C	0.305	6E-21		0.36	[0.27-0.44] unit decrease	Illumina [~ 17000000] (imputed)	N
833	chr6	32604653	32604654	rs9272371	29868224	Sallah N	2017-11-27	Glob Health Epidemiol Genom	Whole-genome association study of antibody response to Epstein-Barr virus in an African population: a pilot.	Epstein Barr virus nuclear antigen 1 IgG seropositivity	1,201 Ugandan ancestry cases, 361 Ugandan ancestry controls	NA	6p21.32	HLA-DQA1	rs9272371-?	0.695	4E-10		1.12	[1.08-1.16]	Illumina [~ 17000000] (imputed)	N
833	chr6	32604653	32604654	rs9272371	29868224	Sallah N	2017-11-27	Glob Health Epidemiol Genom	Whole-genome association study of antibody response to Epstein-Barr virus in an African population: a pilot.	Epstein Barr virus nuclear antigen 1 IgG levels	1,473 Ugandan ancestry individuals, 2,162 European ancestry individuals	NA	6p21.32	HLA-DQA1	rs9272371-C	0.305	3E-17	(AA)	0.36	[0.26-0.42] unit decrease	Illumina [up to 17000000] (imputed)	N
833	chr6	32605188	32605189	rs9272426	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PILRA	5,368 Icelandic ancestry individuals	NA	6p21.32		rs9272426-G	0.3435	2E-12		0.141419	[0.1-0.18] unit increase	Illumina [7506463] (imputed)	N
833	chr6	32605188	32605189	rs9272426	32581359	Saevarsdottir S	2020-06-24	Nature	FLT3 stop mutation increases FLT3 ligand level and risk of autoimmune thyroid disease.	Autoimmune thyroid disease	30,234 European ancestry cases, 724,172 European ancestry controls	NA	6p21.32	HLA-DQA1	rs9272426-G	0.448	1E-196		1.31	[NR]	Affymetrix, Illumina [42900000] (imputed)	N
833	chr6	32605188	32605189	rs9272426	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs9272426-?	NR	1E-33				Affymetrix [~ 8270000] (imputed)	N
833	chr6	32605206	32605207	rs3187964	32421744	Gzara C	2020-05-18	PLoS Pathog	Family-based genome-wide association study of leprosy in Vietnam.	Leprosy	1,749 Vietnamese ancestry cases	1,181 Vietnamese ancestry cases, 688 Vietnamese ancestry controls	6p21.32	HLA-DQA1	rs3187964-C	0.41	8E-16		1.67	[1.55-1.80]	Illumina [5607170] (imputed)	N
833	chr6	32605500	32605501	rs9272451	33549134	Adolphe C	2021-02-06	Genome Med	Genetic and functional interaction network analysis reveals global enrichment of regulatory T cell genes influencing basal cell carcinoma susceptibility.	Basal cell carcinoma	17,416 European ancestry cases, 375,455 European ancestry controls	NA	6p21.32	HLA-DQA1	rs9272451-G	0.386296	4E-21		0.10671105	[0.085-0.129] unit decrease	Affymetrix [7260263] (imputed)	N
833	chr6	32605507	32605508	rs2213287	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	6p21.32		rs2213287-?	NR	5E-9		0.00544481	[0.0036-0.0073] unit decrease	NR [NR]	N
833	chr6	32605883	32605884	rs2187668	28008999	Ostrowski J	2016-12-23	Sci Rep	Genetic architecture differences between pediatric and adult-onset inflammatory bowel diseases in the Polish population.	Ulcerative colitis	269 Polish ancestry child cases, 259 Polish ancestry adult cases, 582 Polish ancestry controls	121 Polish ancestry child cases, 85 Polish ancestry adult cases, 352 Polish ancestry controls	6p21.32	HLA-DQA1	rs2187668-?		4E-6	(Adults)	2.21266	[1.54-3.12]	Illumina [2612357]	N
833	chr6	32605883	32605884	rs2187668	28008999	Ostrowski J	2016-12-23	Sci Rep	Genetic architecture differences between pediatric and adult-onset inflammatory bowel diseases in the Polish population.	Inflammatory bowel disease	622 Polish ancestry child cases, 496 Polish ancestry adult cases, 582 Polish ancestry controls	192 Polish ancestry child cases, 185 Polish ancestry adult cases, 352 Polish ancestry controls	6p21.32	HLA-DQA1	rs2187668-?	NR	2E-7	(Adult)	1.9647566	[1.52-2.56]	Illumina [2612357]	N
833	chr6	32605883	32605884	rs2187668	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Diastolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	6p21.32	BAT2, BAT5	rs2187668-T	0.126	4E-11		0.372	[0.26-0.48] mm Hg decrease	Affymetrix, Illumina, Perlegen [128272]	N
833	chr6	32605883	32605884	rs2187668	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Diastolic blood pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	6p21.32	HLA-DQB1	rs2187668-T	0.1281	8E-6		0.0258	unit decrease	Illumina [242296]	N
833	chr6	32605883	32605884	rs2187668	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p21.32	HLA-DQA1	rs2187668-A	0.359	5E-36		3.4	[2.24-5.17]	Illumina [118177]	N
833	chr6	32605883	32605884	rs2187668	26525574	Westerlind H	2015-11-02	Gut	Dense genotyping of immune-related loci identifies HLA variants associated with increased risk of collagenous colitis.	Collagenous colitis	247 European ancestry cases, 3969 European ancestry controls	67 European ancestry cases, 330 European ancestry controls	6p21.32	HLA	rs2187668-?	0.126	2E-11		2.06	[1.67-2.55]	Illumina [110634]	N
833	chr6	32605883	32605884	rs2187668	26316170	Demirci FY	2015-08-28	Arthritis Rheumatol	Identification of a New Susceptibility Locus for Systemic Lupus Erythematosus on Chromosome 12 in Individuals of European Ancestry.	Systemic lupus erythematosus	661 European ancestry cases, 487 European ancestry controls	4,467 European ancestry cases, 9,114 European ancestry controls	6p21.32	HLA-DQA1	rs2187668-?	NR	1E-9				Affymetrix [up to 700598]	N
833	chr6	32605883	32605884	rs2187668	25827949	Kunz M	2015-05-04	Exp Dermatol	Genome-wide association study identifies new susceptibility loci for cutaneous lupus erythematosus.	Cutaneous lupus erythematosus	151 European ancestry cases, 1,288 European ancestry controls	219 European ancestry cases, 262 European ancestry controls	6p21.32	HLA-DQA1	rs2187668-T	0.107	4E-10		2.93	[2.18-3.95]	Affymetrix [906600]	N
833	chr6	32605883	32605884	rs2187668	24768677	de Boer YS	2014-04-23	Gastroenterology	Genome-wide association study identifies variants associated with autoimmune hepatitis type 1.	Autoimmune hepatitis type-1	649 European ancestry cases, 13,436 European ancestry controls	451 European ancestry cases, 4,103 European ancestry controls	6p21.32	HLA-DQA1	rs2187668-?	0.15	2E-78		2.9	[2.60-3.40]	Illumina [254006]	N
833	chr6	32605883	32605884	rs2187668	21408207	Chung SA	2011-03-03	PLoS Genet	Differential genetic associations for systemic lupus erythematosus based on anti-dsDNA autoantibody production.	Systemic lupus erythematosus	811 anti-dsDNA positive European ancestry cases, 906 anti-dsDNA negative European ancestry cases, 4,813 European ancestry controls	NA	6p21.32	HLA-DR3	rs2187668-A	0.12	6E-28	(anti-dsDNA +)	2.23	[1.94-2.57]	Illumina [421318] (imputed)	N
833	chr6	32605883	32605884	rs2187668	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.32	HLA-DQA1	rs2187668-A	0.1297	8E-93		4.32	[NR]	Illumina [242824]	N
833	chr6	32605883	32605884	rs2187668	20694011	Ferreira RC	2010-08-08	Nat Genet	Association of IFIH1 and other autoimmunity risk alleles with selective IgA deficiency.	Immunoglobulin A	430 European ancestry cases, 1,090 European ancestry controls	342 European ancestry cases, 886 European ancestry controls	6p21.32	HLA-DRB1	rs2187668-A	0.13	2E-33		2.53	[2.17-2.95]	Illumina [2057134] (imputed)	N
833	chr6	32605883	32605884	rs2187668	20190752	Dubois PC	2010-02-28	Nat Genet	Multiple common variants for celiac disease influencing immune gene expression.	Celiac disease	4,533 European ancestry cases, 10,750 European ancestry controls	4,918 European ancestry cases, 5,684 European ancestry controls	6p21.32	HLA-DQB1, HLA-DQA1	rs2187668-A	0.26	1E-50		6.23	[5.95-6.52]	Illumina [292387]	N
833	chr6	32605883	32605884	rs2187668	18204098	Hom G	2008-01-20	N Engl J Med	Association of systemic lupus erythematosus with C8orf13-BLK and ITGAM-ITGAX.	Systemic lupus erythematosus	1,311 European ancestry cases, 3,340 European ancestry controls	793 European ancestry cases, 857 European ancestry controls	6p21.32	HLA-DQA1	rs2187668-A	0.11	3E-21				Illumina [502033]	N
833	chr6	32605883	32605884	rs2187668	17558408	van Heel DA	2007-06-10	Nat Genet	A genome-wide association study for celiac disease identifies risk variants in the region harboring IL2 and IL21.	Celiac disease	778 European ancestry cases, 1,422 European ancestry controls	991 European ancestry cases, 1,489 European ancestry controls	6p21.32	HLA-DQA1	rs2187668-A	0.14	1E-19		7.04	[6.08-8.15]	Illumina [310605]	N
833	chr6	32606243	32606244	rs9272502	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Asthma	38,369 European ancestry cases, 411,131 European ancestry controls, 13,015 East Asian ancestry cases, 162,933 East Asian ancestry controls	NA	6p21.32		rs9272502-T	NR	2E-70		0.1424	[0.13-0.16] unit increase	Affymetrix, Illumina [25837673] (imputed)	N
833	chr6	32606313	32606314	rs9272505	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	334,944 European ancestry, NR ancestry individuals	NA	6p21.32		rs9272505-?	NR	5E-8				Affymetrix [NR] (imputed)	N
833	chr6	32606478	32606479	rs9272521	33893285	Guindo-Martinez M	2021-04-23	Nat Commun	The impact of non-additive genetic associations on age-related complex diseases.	Asthma	9,209 European ancestry cases, 47,428 European ancestry controls	NA	6p21.32		rs9272521-A	0.436944	6E-15		1.15		Affymetrix [15607971] (imputed)	N
833	chr6	32606578	32606579	rs28680981	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.32		rs28680981-G	0.738	3E-67				Affymetrix [10369434] (imputed)	N
833	chr6	32606642	32606643	rs9272532	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.32		rs9272532-C	0.77	2E-33				Affymetrix [10369434] (imputed)	N
833	chr6	32606755	32606756	rs9272535	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	6p21.32	HLA-DQA1	rs9272535-A	0.2454	6E-30		0.04727792	[0.039-0.055] unit decrease	Affymetrix [~ 2500000] (imputed)	N
833	chr6	32606755	32606756	rs9272535	21131588	Slager SL	2010-12-03	Blood	Genome-wide association study identifies a novel susceptibility locus at 6p21.3 among familial CLL.	Chronic lymphocytic leukemia	407 European ancestry cases, 296 European ancestry controls	252 European ancestry cases, 965 European ancestry controls	6p21.32	HLA-DQA1	rs9272535-A	0.27	9E-8		1.61	[1.35-1.92]	Affymetrix [827777]	N
833	chr6	32606877	32606878	rs9272544	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	6p21.32	HLA-DQA1	rs9272544-A	0.4858	8E-11		0.02325084	[0.016-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
833	chr6	32606884	32606885	rs9272545	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6p21.32	NR	rs9272545-T	0.6122	1E-8		1.0357327	[1.02-1.05]	Affymetrix [15688218] (imputed)	N
833	chr6	32606884	32606885	rs9272545	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	6p21.32	NR	rs9272545-?	NR	7E-288	(conditional)			Affymetrix [15688218] (imputed)	N
833	chr6	32606911	32606912	rs28383364	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	6p21.32	BTNL2, C6orf10, HCG23, HLA-DOB, HLA-DQA1, HLA-DQA2, HLA-DQB1, HLA-DQB2, HLA-DRA, HLA-DRB1, HLA-DRB5, HLA-DRB6, TAP2	rs28383364-A	0.802222	3E-17		1.0942891	[1.07-1.12]	Affymetrix [8274727] (imputed)	N
833	chr6	32606940	32606941	rs9272546	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	6p21.32		rs9272546-T	0.341931	9E-18		0.0373707	[0.029-0.046] unit decrease	NR [11722792] (imputed)	N
833	chr6	32607018	32607019	rs28802989	29036319	Qi H	2017-09-26	Hum Mol Genet	Discovery of susceptibility loci associated with tuberculosis in Han Chinese.	Tuberculosis	972 Chinese ancestry cases, 1,316 Gambian ancestry cases, 1,537 Chinese ancestry controls, 1,382 Gambian ancestry controls	NA	6p21.32	NR	rs28802989-?	NR	2E-6				Illumina [7333833] (imputed)	N
833	chr6	32607174	32607175	rs9272566	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic glomerulonephritis	566 European ancestry cases, 475,255 European ancestry controls, 210 East Asian ancestry cases, 174,345 East Asian ancestry controls	NA	6p21.32		rs9272566-A	NR	3E-11		0.6694	[0.47-0.87] unit increase	Affymetrix, Illumina [25844108] (imputed)	N
833	chr6	32607174	32607175	rs9272566	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.32		rs9272566-G	0.715	3E-45				Affymetrix [10369434] (imputed)	N
833	chr6	32607238	32607239	rs28383378	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.32		rs28383378-C	0.653	3E-62				Affymetrix [10369434] (imputed)	N
833	chr6	32607252	32607253	rs28383380	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.32		rs28383380-C	0.652	2E-29				Affymetrix [10369434] (imputed)	N
833	chr6	32607369	32607370	rs35248896	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs35248896-T	NR	7E-13		0.0255337	[0.019-0.033] unit increase	Affymetrix [319769] (imputed)	N
833	chr6	32607369	32607370	rs35248896	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs35248896-T	NR	2E-12		0.0251292	[0.018-0.032] unit increase	Affymetrix [319769] (imputed)	N
833	chr6	32607369	32607370	rs35248896	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs35248896-T	NR	7E-12		0.0246503	[0.018-0.032] unit increase	Affymetrix [321169] (imputed)	N
833	chr6	32607560	32607561	rs9272594	32141793	Garman L	2020-03-06	Ocul Immunol Inflamm	Genome-Wide Association Study of Ocular Sarcoidosis Confirms HLA Associations and Implicates Barrier Function and Autoimmunity in African Americans.	Ocular sarcoidosis	260 African American cases, 1,551 African American controls	NA	6p21.32	NR	rs9272594-C	NR	2E-6		1.612	[1.33-1.96]	Illumina [13976150] (imputed)	N
833	chr6	32607993	32607994	rs9272624	34532061	Hodel F	2021-06-11	Virus Evol	Human genomics of the humoral immune response against polyomaviruses.	Human polyomavirus 6 VP1 antibody levels	5,094 European ancestry individuals	NA	6p21.32		rs9272624-?	NR	1E-13				Affymetrix [NR] (imputed)	N
833	chr6	32608040	32608041	rs9272626	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	6p21.32		rs9272626-C	NR	7E-51		0.0361	[0.031-0.041] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
833	chr6	32608248	32608249	rs117441922	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (immunosuppressants)	3,483 East Asian ancestry cases, 175,243 East Asian ancestry controls	NA	6p21.32		rs117441922-C	0.127734413	9E-73		0.7531444	[0.67-0.83] unit increase	Illumina [13134967] (imputed)	N
833	chr6	32608282	32608282	rs146682150	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	HLA-DQA1	rs146682150-GA	0.798	5E-12	(Osteocalcin, BGLAP.11067.13.3)	0.21	[0.15-0.27] unit increase	Affymetrix [10572788] (imputed)	N
833	chr6	32608589	32608589	rs34713112	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	6p21.32		rs34713112-T	0.350487	4E-14		0.0349957	[0.026-0.044] unit decrease	NR [11722792] (imputed)	N
833	chr6	32608769	32608770	rs4452681	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in LDL	115,082 European ancestry individuals	NA	6p21.32		rs4452681-C	0.85737	8E-16		0.0477326	[0.036-0.059] unit decrease	NR [11722792] (imputed)	N
833	chr6	32608769	32608770	rs4452681	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	6p21.32		rs4452681-C	0.85737	4E-14		0.0448685	[0.033-0.057] unit decrease	NR [11722792] (imputed)	N
833	chr6	32608769	32608770	rs4452681	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of IDL particles	115,082 European ancestry individuals	NA	6p21.32		rs4452681-C	0.85737	2E-15		0.0465836	[0.035-0.058] unit decrease	NR [11722792] (imputed)	N
833	chr6	32608857	32608858	rs4455710	32041948	Sarin KY	2020-02-10	Nat Commun	Genome-wide meta-analysis identifies eight new susceptibility loci for cutaneous squamous cell carcinoma.	Cutaneous squamous cell carcinoma	19,149 European ancestry cases, 680,049 European ancestry controls	NA	6p21.32	HLA-DQA1	rs4455710-T	0.368	6E-21		0.14	[0.1-0.18] unit increase	NR [13607369] (imputed)	N
833	chr6	32608857	32608858	rs4455710	26829030	Asgari MM	2016-01-29	J Invest Dermatol	Identification of Susceptibility Loci for Cutaneous Squamous Cell Carcinoma.	Squamous cell carcinoma	6,891 European ancestry cases, 54,566 European ancestry controls	810 European ancestry cases,  5,600 European ancestry controls	6p21.32	HLA-DQA1	rs4455710-T	0.38	2E-18		1.17	[1.13-1.21]	Affymetrix [9610468] (imputed)	N
833	chr6	32609104	32609105	rs1129740	33909500	Moll M	2021-04-28	Am J Physiol Lung Cell Mol Physiol	A Systematic Analysis of Protein-altering Exonic Variants in Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease	up to 31,465 European ancestry cases, up to 203,688 European ancestry controls, up to 1,413 African ancestry cases, up to 6,080 African ancestry controls, up to 287 East Asian ancestry cases, up to 7,484 East Asian ancestry controls, up to 61 Hispanic cases, up to 613 Hispanic controls	NA	6p21.32	HLA-DQA1	rs1129740-A	0.59	1E-9		1.07	[1.04 -1.09]	Illumina [at least 109036]	N
833	chr6	32609125	32609126	rs1071630	33328473	Ahluwalia TS	2020-12-16	Nat Commun	FUT2-ABO epistasis increases the risk of early childhood asthma and Streptococcus pneumoniae respiratory illnesses.	Childhood asthma with severe exacerbations	2,866 European ancestry cases,  65,415 European ancestry controls	NA	6p21.32	HLA-DQA1	rs1071630-C	NR	8E-14		1.25	[1.18-1.32]	Illumina [up to 525976] (imputed)	N
833	chr6	32609191	32609192	rs1142323	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p21.32	HLA-DQA1	rs1142323-G		8E-51		0.036	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
833	chr6	32609228	32609229	rs9272699	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	6p21.32		rs9272699-?	NR	2E-8		0.00587135	[0.0038-0.0079] unit increase	NR [NR]	N
833	chr6	32609369	32609370	rs28383454	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	6p21.32	HLA-DQA1	rs28383454-T	0.537194	1E-143		1.1737434	[1.15939079874647-1.18827364549105]	NR [9572556] (imputed)	N
833	chr6	32609369	32609370	rs28383454	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	6p21.32	HLA-DQA1	rs28383454-T	NR	2E-116		1.177	[1.16-1.19]	Affymetrix [9000000] (imputed)	N
833	chr6	32609593	32609594	rs9272729	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	6p21.32	HLA-DQA1	rs9272729-G	NR	3E-13		0.221651	[0.16-0.28] unit increase	Illumina [at least 950000] (imputed)	N
833	chr6	32609593	32609594	rs9272729	27333618	Sekula P	2016-02-04	Nephrol Dial Transplant	Genetic risk variants for membranous nephropathy: extension of and association with other chronic kidney disease aetiologies.	Membranous nephropathy	323 European ancestry cases, 345 European ancestry controls	137 European ancestry cases, 379 European ancestry controls	6p21.32	HLA-DQA1	rs9272729-A	0.20	2E-39		7.07	[5.28-9.47]	Illumina [8968426] (imputed)	N
833	chr6	32609812	32609813	rs707951	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:0_[M+H]1+/Phosphatidylethanolamine_35:0_[M+H]1+/Phosphatidate_37:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	6p21.32		rs707951-T	NR	4E-10		0.0768107	[0.053-0.101] unit decrease	Affymetrix [87696910] (imputed)	N
833	chr6	32610142	32610142	rs748519761	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	6p21.32		rs748519761-T	0.35406	4E-6		0.033083	[0.019-0.047] unit increase	Affymetrix [15580782] (imputed)	N
833	chr6	32610256	32610257	rs9272775	33143745	Andlauer TFM	2020-11-04	BMC Med	Treatment- and population-specific genetic risk factors for anti-drug antibodies against interferon-beta: a GWAS.	Neutralising antibody response to interferon beta therapy in multiple sclerosis (antibody titre; IFN?-1b subcutaneous)	up to 2,000 German and Swedish ancestry individuals	up to 757 German and Swedish ancestry individuals	6p21.32		rs9272775-C	0.23	3E-24		0.41	[0.33-0.49] unit increase	Illumina [8550834] (imputed)	N
833	chr6	32610256	32610257	rs9272775	33143745	Andlauer TFM	2020-11-04	BMC Med	Treatment- and population-specific genetic risk factors for anti-drug antibodies against interferon-beta: a GWAS.	Binding antibody response to interferon beta therapy in multiple sclerosis (antibody levels; IFN?-1b subcutaneous)	up to 2,000 German and Swedish ancestry individuals	up to 757 German and Swedish ancestry individuals	6p21.32		rs9272775-C	NR	2E-19		0.40715143	[0.32-0.5] unit increase	Illumina [8550834] (imputed)	N
833	chr6	32610280	32610281	rs9272777	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	6p21.32	NR	rs9272777-T	0.410563	3E-15		0.0181515	[0.014-0.022] unit increase	Affymetrix [16583148] (imputed)	N
833	chr6	32610348	32610349	rs9272780	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs9272780-A	NR	7E-11		0.0186986	[0.013-0.024] unit decrease	Affymetrix [321016] (imputed)	N
833	chr6	32610348	32610349	rs9272780	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DQA1	rs9272780-A	NR	3E-14		0.0237876	[0.018-0.03] unit decrease	Affymetrix [323123] (imputed)	N
833	chr6	32610348	32610349	rs9272780	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p21.32	HLA-DQA1	rs9272780-A	0.400343	1E-21		0.02813841	[0.022-0.034] unit increase	Affymetrix [93095623] (imputed)	N
833	chr6	32610435	32610436	rs1048372	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	HLA-DQA1	rs1048372-C	0.609	5E-12	(Amelogenin, X isoform, AMELX.8578.45.3)	0.18	[0.12-0.24] unit increase	Affymetrix [10572788] (imputed)	N
833	chr6	32610436	32610437	rs35087390	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	C-X-C motif chemokine 16 levels	21,758 European ancestry individuals	9,173 individuals	6p21.32		rs35087390-A	0.027	4E-18		0.2561	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
833	chr6	32610444	32610445	rs1048381	33204752	Butler-Laporte G	2020-09-24	Open Forum Infect Dis	Genetic Determinants of Antibody-Mediated Immune Responses to Infectious Diseases Agents: A Genome-Wide and HLA Association Study.	Varicella zoster virus glycoproteins E and I antibody levels	7,595 White British ancestry individuals	NA	6p21.32	HLA-DQA1	rs1048381-G		6E-25		0.22	[0.18-0.26] unit decrease	NR [25472218] (imputed)	N
833	chr6	32610460	32610461	rs9260	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DQA1	rs9260-A	NR	8E-14		0.0290366	[0.021-0.037] unit increase	Affymetrix [323123] (imputed)	N
833	chr6	32611098	32611099	rs28538060	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.32		rs28538060-G	0.858	1E-17				Affymetrix [10369434] (imputed)	N
833	chr6	32611320	32611321	rs9272975	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs9272975-A	0.217	1E-55	(HLA class II histocompatibility antigen, DQ alpha 2 chain, HLA.DQA2.7757.5.3)	0.52	[0.46-0.58] unit decrease	Affymetrix [10572788] (imputed)	N
833	chr6	32611417	32611418	rs9272989	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	6p21.32		rs9272989-C	0.30783	5E-6		0.033104	[0.019-0.047] unit increase	Affymetrix [15580782] (imputed)	N
833	chr6	32611640	32611641	rs9273012	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs9273012-?	NR	3E-16				Affymetrix [~ 8270000] (imputed)	N
833	chr6	32611693	32611694	rs4526236	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hepatic cancer	2,122 East Asian ancestry cases, 159,201 East Asian ancestry controls	NA	6p21.32		rs4526236-A	0.174389152	5E-9		0.24874051	[0.17-0.33] unit decrease	Illumina [13427386] (imputed)	N
833	chr6	32611950	32611951	rs9273039	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	6p21.32	HLA-DQA1	rs9273039-T	0.2667	1E-25		0.04249746	[0.035-0.05] unit decrease	Affymetrix [~ 2500000] (imputed)	N
833	chr6	32612160	32612161	rs9273062	29534301	Nishida N	2018-03-13	Hepatology	Key HLA-DRB1-DQB1 haplotypes and role of the BTNL2 gene for response to a hepatitis B vaccine.	Response to hepatitis B vaccine	107 Japanese ancestry low responder individuals, 351 Japanese ancestry intermediate responder individuals, 735 Japanese ancestry high responder individuals	NA	6p21.32	HLA-DQB1	rs9273062-?		2E-10		0.165	unit increase	Affymetrix [427664]	N
833	chr6	32612300	32612301	rs9273076	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	NA	6p21.32	HLA-DQ1	rs9273076-T		8E-13	(conditional)	1.3	[NR]	Illumina [> 644674] (imputed)	N
833	chr6	32612396	32612397	rs6927022	33204752	Butler-Laporte G	2020-09-24	Open Forum Infect Dis	Genetic Determinants of Antibody-Mediated Immune Responses to Infectious Diseases Agents: A Genome-Wide and HLA Association Study.	Epstein-Barr virus EBNA-1 antibody levels	7,972 White British ancestry individuals	NA	6p21.32	HLA-DQA1	rs6927022-A	0.505	2E-76		0.3	[0.27-0.33] unit increase	NR [25472218] (imputed)	N
833	chr6	32612396	32612397	rs6927022	32737300	Sallah N	2020-07-31	Nat Commun	Distinct genetic architectures and environmental factors associate with host response to the ?2-herpesvirus infections.	Anti-Epstein-Barr virus nuclear antigen (EBNA) IgG levels	4,365 Ugandan ancestry individuals	2,162  European ancestry individuals	6p21.32	HLA-DRB1	rs6927022-A	0.73	1E-21	(Ugandan)	0.26	[0.22-0.30] unit increase	Illumina [14929118] (imputed)	N
833	chr6	32612396	32612397	rs6927022	32737300	Sallah N	2020-07-31	Nat Commun	Distinct genetic architectures and environmental factors associate with host response to the ?2-herpesvirus infections.	Anti-Epstein-Barr virus nuclear antigen (EBNA) IgG levels	4,365 Ugandan ancestry individuals	2,162  European ancestry individuals	6p21.32	HLA-DRB1	rs6927022-A	0.59	7E-26	(EA)	0.16	[0.16-0.16] unit increase	Illumina [14929118] (imputed)	N
833	chr6	32612396	32612397	rs6927022	29868224	Sallah N	2017-11-27	Glob Health Epidemiol Genom	Whole-genome association study of antibody response to Epstein-Barr virus in an African population: a pilot.	Epstein Barr virus nuclear antigen 1 IgG levels	1,473 Ugandan ancestry individuals, 2,162 European ancestry individuals	NA	6p21.32	HLA-DRB1	rs6927022-A	0.59	7E-26	(EA)	0.16	[0.13-0.19] unit increase	Illumina [up to 17000000] (imputed)	N
833	chr6	32612396	32612397	rs6927022	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Ulcerative colitis	12,366 European and unknown ancestry cases, 33,609 European and unknown ancestry controls	NA	6p21.32	C6orf15, CDSN, PSORS1C2, HCG27, HLA-C, HLA-B, MCCD1, ATP6V1G2, LTA, TNF, LTB, NCR3, AIF1, BAG6, C6orf47, GPANK1, LY6G5B, LY6G5C, LY6G6F, MEGT1, LY6G6E, LY6G6D, DDAH2, SAPCD1, HSPA1L, HSPA1B, C6orf48, NEU1, ZBTB12, NELFE, DXO, AL645922.1, CYP21A2, FKBPL, PRRT1, EGFL8, RNF5, AGER, PBX2, HLA-DRA, HLA-DQB1, HLA-DQA2, HLA-DQB2, PSORS1C1, CCHCR1, TCF19, POU5F1, MICA, MICB, DDX39B, ATP6V1G2-DDX39B, NFKBIL1, LST1, PRRC2A, APOM, CSNK2B, CSNK2B-LY6G5B-1181, ABHD16A, XXbac-BPG32J3.20, C6orf25, LY6G6C, CLIC1, VWA7, VARS, LSM2, HSPA1A, SLC44A4, C2, CFB, SKIV2L, STK19, C4A, C4B, TNXB, ATF6B, PPT2, PPT2-EGFL8, AGPAT1, GPSM3, NOTCH4, C6orf10, HLA-DRB5, HLA-DRB1, HLA-DQA1, MSH5, MSH5-SAPCD1, EHMT2, BTNL2	rs6927022-?		5E-65				Illumina [9578670] (imputed)	N
833	chr6	32612396	32612397	rs6927022	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	6p21.32	C6orf15, CDSN, PSORS1C2, HCG27, HLA-C, HLA-B, MCCD1, ATP6V1G2, LTA, TNF, LTB, NCR3, AIF1, BAG6, C6orf47, GPANK1, LY6G5B, LY6G5C, LY6G6F, MEGT1, LY6G6E, LY6G6D, DDAH2, SAPCD1, HSPA1L, HSPA1B, C6orf48, NEU1, ZBTB12, NELFE, DXO, AL645922.1, CYP21A2, FKBPL, PRRT1, EGFL8, RNF5, AGER, PBX2, HLA-DRA, HLA-DQB1, HLA-DQA2, HLA-DQB2, PSORS1C1, CCHCR1, TCF19, POU5F1, MICA, MICB, DDX39B, ATP6V1G2-DDX39B, NFKBIL1, LST1, PRRC2A, APOM, CSNK2B, CSNK2B-LY6G5B-1181, ABHD16A, XXbac-BPG32J3.20, C6orf25, LY6G6C, CLIC1, VWA7, VARS, LSM2, HSPA1A, SLC44A4, C2, CFB, SKIV2L, STK19, C4A, C4B, TNXB, ATF6B, PPT2, PPT2-EGFL8, AGPAT1, GPSM3, NOTCH4, C6orf10, HLA-DRB5, HLA-DRB1, HLA-DQA1, MSH5, MSH5-SAPCD1, EHMT2, BTNL2	rs6927022-?		2E-31				Illumina [9725440] (imputed)	N
833	chr6	32612396	32612397	rs6927022	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Ulcerative colitis	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls	6p21.32	HLA-DQB1, HLA-DRA, HLA-DRB1, HLA-DQA1	rs6927022-A	0.535	5E-133		1.444	[1.387-1.503]	Affymetrix, Illumina [1230000] (imputed)	N
833	chr6	32612429	32612430	rs6926894	31959851	Olafsdottir TA	2020-01-20	Nat Commun	Eighty-eight variants highlight the role of T cell regulation and airway remodeling in asthma pathogenesis.	Asthma	16,247 European ancestry cases, 346,486 European ancestry controls, 52,942 cases, 355,713 controls	NA	6p21.32	HLA-DQA1, HLA-DQB1, HLA-DRB1, HLA-DRB6, HLA-DQA2, MIR3135B	rs6926894-C	0.59076	2E-126		1.16642	[1.15-1.18]	Affymetrix [32463443] (imputed)	N
833	chr6	32612429	32612430	rs6926894	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	6p21.32	HLA-DQA1, HLA-DQB1	rs6926894-T	0.4094	2E-100				Affymetrix [15688218] (imputed)	N
833	chr6	32612459	32612460	rs200930495	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs200930495-A	0.148	5E-31	(Complement C4, C4A.C4B.4481.34.2)	0.45	[0.37-0.53] unit increase	Affymetrix [10572788] (imputed)	N
833	chr6	32612654	32612655	rs9273113	32141793	Garman L	2020-03-06	Ocul Immunol Inflamm	Genome-Wide Association Study of Ocular Sarcoidosis Confirms HLA Associations and Implicates Barrier Function and Autoimmunity in African Americans.	Ocular sarcoidosis	260 African American cases, 1,551 African American controls	NA	6p21.32	NR	rs9273113-A	NR	6E-6		1.57	[1.29-1.91]	Illumina [13976150] (imputed)	N
833	chr6	32612732	32612733	rs9273123	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	6p21.32	HLA-DQA1	rs9273123-A	NR	4E-105		1.187	[1.17-1.2]	Affymetrix [9000000] (imputed)	N
833	chr6	32613300	32613301	rs9273177	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.32	HLA-DQA1, HLA-DQB1	rs9273177-?		1E-13		1.1363636	[1.1-1.16]	Affymetrix, Illumina [NR]	N
833	chr6	32613417	32613418	rs9273190	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs9273190-A	0.364	1E-54	(conditional)	1.79	[1.72-1.86]	Illumina [11270530] (imputed)	N
833	chr6	32614093	32614094	rs115210925	34642315	Ferreiro-Iglesias A	2021-10-12	Nat Commun	Germline determinants of humoral immune response to HPV-16 protect against oropharyngeal cancer.	Human papilloma virus 16 negative oropharyngeal cancer	565 European ancestry cases, 5,256 European ancestry controls	NA	6p21.32		rs115210925-G	NR	5E-7		1.46		Illumina [7574753] (imputed)	N
833	chr6	32614359	32614360	rs115443066	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.32	HLA-DQA1, HLA-DQB1	rs115443066-A		4E-9		1.08	[1.05-1.11]	Affymetrix, Illumina [NR]	N
833	chr6	32614942	32614943	rs17843569	33204752	Butler-Laporte G	2020-09-24	Open Forum Infect Dis	Genetic Determinants of Antibody-Mediated Immune Responses to Infectious Diseases Agents: A Genome-Wide and HLA Association Study.	Anti-polyomavirus 2 IgG seropositivity	8,735 White British ancestry individuals	NA	6p21.32	HLA-DQA1	rs17843569-C	0.157	2E-47		0.15	[0.13-0.17] unit decrease	NR [25472218] (imputed)	N
833	chr6	32615345	32615346	rs28609302	32141793	Garman L	2020-03-06	Ocul Immunol Inflamm	Genome-Wide Association Study of Ocular Sarcoidosis Confirms HLA Associations and Implicates Barrier Function and Autoimmunity in African Americans.	Ocular sarcoidosis	260 African American cases, 1,551 African American controls	NA	6p21.32	NR	rs28609302-G	NR	2E-7		2.137	[1.61-2.84]	Illumina [13976150] (imputed)	N
833	chr6	32615420	32615421	rs7745002	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cataracts	39,519 European ancestry cases, 452,358 European ancestry controls, 38,194 East Asian ancestry cases, 140,532 East Asian ancestry controls	NA	6p21.32		rs7745002-G	NR	2E-9		0.0386	[0.026-0.051] unit increase	Affymetrix, Illumina [25845331] (imputed)	N
833	chr6	32615509	32615510	rs17843577	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	6p21.32	NR	rs17843577-?	NR	8E-223	(conditional)			Affymetrix [15688218] (imputed)	N
833	chr6	32615550	32615551	rs17843580	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pediatric asthma	27,712 European ancestry cases, 411,131 European ancestry controls, 547 East Asian ancestry cases, 161,803 East Asian ancestry controls	NA	6p21.32		rs17843580-G	NR	3E-64		0.1628	[0.14-0.18] unit increase	Affymetrix, Illumina [25832605] (imputed)	N
833	chr6	32615550	32615551	rs17843580	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (adrenergics, inhalants)	28,880 European ancestry cases, 147,565 European ancestry controls, 5,880 East Asian ancestry cases, 172,846 East Asian ancestry controls	NA	6p21.32		rs17843580-G	NR	2E-70		0.1494	[0.13-0.17] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
833	chr6	32615550	32615551	rs17843580	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.32	NR	rs17843580-?	NR	4E-31				Affymetrix [~ 8270000] (imputed)	N
833	chr6	32615550	32615551	rs17843580	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (adrenergics, inhalants)	28,880 European ancestry cases, 147,565 European ancestry controls	NA	6p21.32	HLA-DQA1	rs17843580-A	0.394094	3E-74		0.17041229	[0.15-0.19] unit decrease	Affymetrix [7288503] (imputed)	N
833	chr6	32615635	32615636	rs772081778	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p21.32	HLA-DQA1	rs772081778-A	0.8872	3E-9	(-136 ms)	0.0566902	[0.038-0.075] unit decrease	Affymetrix [10000000] (imputed)	N
833	chr6	32615635	32615636	rs772081778	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p21.32	HLA-DQA1	rs772081778-A	0.8872	2E-9	(-138 ms)	0.0575151	[0.039-0.076] unit decrease	Affymetrix [10000000] (imputed)	N
833	chr6	32615635	32615636	rs772081778	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p21.32	HLA-DQA1	rs772081778-A	0.8872	2E-8	(-140 ms)	0.0542888	[0.036-0.073] unit decrease	Affymetrix [10000000] (imputed)	N
833	chr6	32615635	32615636	rs772081778	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p21.32	HLA-DQA1	rs772081778-A	0.8872	1E-8	(-134 ms)	0.0542769	[0.036-0.073] unit decrease	Affymetrix [10000000] (imputed)	N
833	chr6	32615944	32615945	rs17612712	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic bronchitis	10,159 European ancestry cases, 440,263 European ancestry controls, 271 East Asian ancestry cases, 161,803 East Asian ancestry controls	NA	6p21.32		rs17612712-T	NR	2E-9		0.0965	[0.065-0.128] unit increase	Affymetrix, Illumina [25840074] (imputed)	N
833	chr6	32617808	32617809	rs28798705	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	6p21.32	HLA-DQA1, HLA-DQB1	rs28798705-A	NR	6E-104		1.179	[1.16-1.19]	Affymetrix [9000000] (imputed)	N
833	chr6	32617808	32617809	rs28798705	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	6p21.32	HLA-DQA1	rs28798705-G	0.3017	1E-14		0.03202858	[0.024-0.04] unit decrease	Affymetrix [~ 2500000] (imputed)	N
833	chr6	32618795	32618796	rs111959275	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.32	HLA-DQA1	rs111959275-T	0.142688	7E-15		0.04350488	[0.033-0.054] unit increase	Affymetrix [93095623] (imputed)	N
833	chr6	32619653	32619654	rs28418426	34642315	Ferreiro-Iglesias A	2021-10-12	Nat Commun	Germline determinants of humoral immune response to HPV-16 protect against oropharyngeal cancer.	Human papilloma virus 16 positive oropharyngeal cancer	1,078 European ancestry cases, 5,256 European ancestry controls	NA	6p21.32		rs28418426-C	NR	8E-12		1.5588		Illumina [7574753] (imputed)	N
833	chr6	32619834	32619835	rs55651120	33893285	Guindo-Martinez M	2021-04-23	Nat Commun	The impact of non-additive genetic associations on age-related complex diseases.	Dyslipidemia	30,244 European ancestry cases, 26,393 European ancestry controls	NA	6p21.32		rs55651120-T	0.105	5E-11		1.15		Affymetrix [15679186] (imputed)	N
833	chr6	32620282	32620283	rs17843604	30578877	Dahlin A	2018-12-19	J Allergy Clin Immunol	Large-scale, multi-ethnic genome-wide association study identifies novel loci contributing to asthma susceptibility in adults.	Adult asthma	16,274 European ancestry cases, 38,269 European ancestry controls	10,365 European ancestry cases, 16,110 European ancestry controls, cases and controls (see Moffatt et al 2010)	6p21.32	HLA-DQA1	rs17843604-?	NR	1E-18		1.1111112	[1.08-1.14]	Affymetrix [7230512] (imputed)	N
833	chr6	32620540	32620541	rs17612845	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	6p21.32		rs17612845-G	0.352624	4E-13		0.0316957	[0.023-0.04] unit increase	NR [11722792] (imputed)	N
833	chr6	32620540	32620541	rs17612845	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	6p21.32		rs17612845-G	0.352624	7E-13		0.0312	[0.023-0.04] unit increase	NR [11722792] (imputed)	N
833	chr6	32620915	32620916	rs74951723	30053915	Scepanovic P	2018-07-27	Genome Med	Human genetic variants and age are the strongest predictors of humoral immune responses to common pathogens and vaccines.	Anti-Epstein-Barr virus nuclear antigen (EBNA) IgG levels	914 Metropolitan French ancestry individuals	NA	6p21.32	HLA	rs74951723-A	NR	3E-14		0.29	[0.21-0.36] unit increase	Illumina [5699237] (imputed)	N
833	chr6	32620998	32620999	rs17612942	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs17612942-A	NR	1E-8		0.0193929	[0.013-0.026] unit decrease	Affymetrix [319769] (imputed)	N
833	chr6	32621012	32621013	rs17843626	32884031	Chuang GT	2020-09-03	Sci Rep	Genome-wide association study for circulating fibroblast growth factor 21 and 23.	Circulating fibroblast growth factor 23 levels	4,201 Taiwanese ancestry individuals	NA	6p21.32		rs17843626-G	0.49	2E-8		0.117	[0.076-0.158] unit increase	Affymetrix [7897704] (imputed)	N
833	chr6	32621131	32621132	rs9366803	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	6p21.32	HLA-DQB1	rs9366803-T	0.683074	1E-10		0.0107853	[0.0075-0.0141] unit decrease	Affymetrix [12370749]	N
833	chr6	32622131	32622132	rs28755170	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs28755170-A	0.271	4E-15	(Complement C4, C4A.C4B.4481.34.2)	0.25	[0.19-0.31] unit increase	Affymetrix [10572788] (imputed)	N
833	chr6	32622358	32622359	rs17613465	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	6p21.32	HLA-DQB1	rs17613465-G	0.8098	5E-12		0.03277746	[0.023-0.042] unit increase	Affymetrix [~ 2500000] (imputed)	N
833	chr6	32622696	32622697	rs28664894	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs28664894-C	0.718771	2E-9		0.0292075	[0.02-0.039] unit increase	NR [11722792] (imputed)	N
833	chr6	32622696	32622697	rs28664894	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in VLDL	115,082 European ancestry individuals	NA	6p21.32		rs28664894-C	0.718771	3E-8		0.0270375	[0.017-0.037] unit increase	NR [11722792] (imputed)	N
833	chr6	32622696	32622697	rs28664894	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in VLDL	115,082 European ancestry individuals	NA	6p21.32		rs28664894-C	0.718771	5E-8		0.0267967	[0.017-0.036] unit increase	NR [11722792] (imputed)	N
833	chr6	32622696	32622697	rs28664894	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small VLDL particles	115,082 European ancestry individuals	NA	6p21.32		rs28664894-C	0.718771	1E-9		0.0294971	[0.02-0.039] unit increase	NR [11722792] (imputed)	N
833	chr6	32622696	32622697	rs28664894	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6p21.32		rs28664894-C	0.718771	7E-9		0.0286413	[0.019-0.038] unit increase	NR [11722792] (imputed)	N
833	chr6	32622696	32622697	rs28664894	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs28664894-C	0.718771	3E-8		0.0268444	[0.017-0.036] unit increase	NR [11722792] (imputed)	N
833	chr6	32622696	32622697	rs28664894	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs28664894-C	0.718771	5E-9		0.0284797	[0.019-0.038] unit increase	NR [11722792] (imputed)	N
833	chr6	32622696	32622697	rs28664894	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs28664894-C	0.718771	3E-8		0.026663	[0.017-0.036] unit increase	NR [11722792] (imputed)	N
833	chr6	32623149	32623150	rs3021302	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systemic lupus erythematosus	647 European ancestry cases, 482,264 European ancestry controls, 317 East Asian ancestry cases, 175,937 East Asian ancestry controls	NA	6p21.32		rs3021302-C	NR	5E-18		0.6262	[0.48-0.77] unit increase	Affymetrix, Illumina [25844568] (imputed)	N
833	chr6	32623149	32623150	rs3021302	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	HLA-DQB1	rs3021302-C	NR	2E-12		0.0292843	[0.021-0.037] unit decrease	Affymetrix [127266] (imputed)	N
833	chr6	32623149	32623150	rs3021302	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p21.32	HLA-DQB1	rs3021302-C	NR	3E-8		0.0228369	[0.015-0.031] unit decrease	Affymetrix [323858] (imputed)	N
833	chr6	32623192	32623193	rs9273325	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DQB1	rs9273325-A	NR	7E-11		0.0243676	[0.017-0.032] unit decrease	Affymetrix [319769] (imputed)	N
833	chr6	32623222	32623223	rs2395228	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQB1	rs2395228-C	NR	7E-12		0.0271648	[0.019-0.035] unit decrease	Affymetrix [319769] (imputed)	N
833	chr6	32623712	32623713	rs55986091	33794208	Bowden SJ	2021-04-01	Lancet Oncol	Genetic variation in cervical preinvasive and invasive disease: a genome-wide association study.	Cervical intraepithelial neoplasia grade 3 and invasive cervical cancer	764 European ancestry invasive cervical cancer cases, 4,005 European ancestry cervical intraepithelial neoplasia grade 3 cases, 145,545 European ancestry controls	NA	6p21.32	HLA-DQB1	rs55986091-?	NR	6E-22		0.66	[0.60-0.72]	Affymetrix [9600464] (imputed)	N
833	chr6	32623785	32623786	rs28391274	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	6p21.32	HLA-DQB1-AS1	rs28391274-G	0.20467	2E-9		0.020061905	[0.014-0.027] unit increase	Affymetrix [93095623] (imputed)	N
833	chr6	32623886	32623887	rs28532217	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	6p21.32		rs28532217-C	0.879	8E-26				Affymetrix [10369434] (imputed)	N
833	chr6	32624016	32624017	rs145607970	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.32	intergenic	rs145607970-?		1E-8		1.1363636	[1.09-1.19]	Affymetrix, Illumina [NR]	N
833	chr6	32624506	32624507	rs59142330	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs59142330-C	0.263	8E-19	(cAMP-specific 3',5'-cyclic phosphodiesterase 4D, PDE4D.5255.22.3)	0.28	[0.22-0.34] unit decrease	Affymetrix [10572788] (imputed)	N
833	chr6	32624506	32624507	rs59142330	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs59142330-C	0.263	6E-24	(Complement C4, C4A.C4B.4481.34.2)	0.32	[0.26-0.38] unit decrease	Affymetrix [10572788] (imputed)	N
833	chr6	32624873	32624874	rs28483633	29857070	Gao J	2018-05-29	J Invest Dermatol	Association study and fine-mapping major histocompatibility complex analysis of pemphigus vulgaris in a Han Chinese population.	Pemphigus vulgaris	240 Han Chinese ancestry cases, 1,031 Han Chinese ancestry controls	252 Han Chinese ancestry cases, 1,852 Han Chinese ancestry controls	6p21.32	HLA-DRB1	rs28483633-?	NR	3E-35		5.86		Illumina [802980]	N
833	chr6	32625282	32625283	rs4639377	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	6p21.32	HLA-DQB1-AS1	rs4639377-C	0.649395	2E-19		0.023854183	[0.019-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
833	chr6	32625383	32625384	rs140780894	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulmonary tuberculosis	895 European ancestry cases, 476,491 European ancestry controls, 7,800 East Asian ancestry cases, 170,871 East Asian ancestry controls	NA	6p21.32		rs140780894-T	NR	3E-23		0.1873	[0.15-0.22] unit increase	Affymetrix, Illumina [25844658] (imputed)	N
833	chr6	32625383	32625384	rs140780894	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulmonary tuberculosis	7,800 East Asian ancestry cases, 170,871 East Asian ancestry controls	NA	6p21.32		rs140780894-T	0.370504007	3E-23		0.18728146	[0.15-0.22] unit increase	Illumina [13429952] (imputed)	N
833	chr6	32625383	32625384	rs140780894	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs140780894-T	0.224	4E-19	(conditional)	1.41	[1.34-1.48]	Illumina [11270530] (imputed)	N
833	chr6	32625408	32625409	rs28631719	35157032	Ramachandran D	2022-02-14	Hum Mol Genet	Genome-wide association study and functional follow-up identifies 14q12 as a candidate risk locus for cervical cancer.	Cervical cancer	363 German ancestry cases, 861 German ancestry controls	NA	6p21.32	NR	rs28631719-A	0.5743	2E-6		0.5672	[0.33-0.8]	Illumina [10000612] (imputed)	N
833	chr6	32625801	32625802	rs149503020	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	6p21.32		rs149503020-?	NR	5E-8				Affymetrix [NR] (imputed)	N
833	chr6	32625868	32625869	rs9273349	20860503	Moffatt MF	2010-09-23	N Engl J Med	A large-scale, consortium-based genomewide association study of asthma.	Asthma	10,365 cases, 16,110 controls	NA	6p21.32	HLA-DQ	rs9273349-C	0.58	7E-14		1.18	[1.13-1.24]	Illumina [582892]	N
833	chr6	32625966	32625967	rs2858856	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	HLA-DQB1	rs2858856-A	NR	4E-9		0.0185689	[0.012-0.025] unit increase	Affymetrix [321114] (imputed)	N
833	chr6	32626014	32626015	rs6905282	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (multivariate analysis)	477,968 European ancestry individuals	NA	6p21.32	HLA, DQA1, DQB1	rs6905282-A	0.466	5E-28		0.05	[0.04-0.06] unit decrease	NR [NR] (imputed)	N
833	chr6	32626014	32626015	rs6905282	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (age of onset)	117,130 European ancestry individuals	NA	6p21.32	HLA-DQA1, HLA-DQB1	rs6905282-A	0.466	1E-23		0.042	[0.034-0.05] unit decrease	NR [7647814] (imputed)	N
833	chr6	32626039	32626040	rs4713570	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Malignant lymphoma	3,546 European ancestry cases, 487,257 European ancestry controls, 335 East Asian ancestry cases, 177,342 East Asian ancestry controls	NA	6p21.32		rs4713570-T	NR	1E-16		0.2256	[0.17-0.28] unit increase	Affymetrix, Illumina [25845276] (imputed)	N
833	chr6	32626129	32626130	rs7744020	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic rhinitis	18,915 European ancestry cases, 239,773 European ancestry controls	NA	6p21.32	HLA-DQB1	rs7744020-A	0.3071	4E-25		1.131	[1.106-1.157]	Affymetrix [15688218] (imputed)	N
833	chr6	32626129	32626130	rs7744020	24204295	Han F	2013-10-31	PLoS Genet	Genome wide analysis of narcolepsy in China implicates novel immune loci and reveals changes in association prior to versus after the 2009 H1N1 influenza pandemic.	Narcolepsy (age of onset)	at least 1,000 Chinese ancestry cases	NA	6p21.32	NR	rs7744020-A	0.272	8E-9		1.9	year decrease	Affymetrix [603382]	N
833	chr6	32626204	32626205	rs6905837	32390946	Liu L	2020-04-22	Front Endocrinol (Lausanne)	Twelve New Genomic Loci Associated With Bone Mineral Density.	Total body bone mineral density (MTAG)	66,628 individuals	NA	6p21.32	NR	rs6905837-C	0.95	3E-6		0.05	[0.03-0.07] unit decrease	Affymetrix, Illumina [7369691] (imputed)	N
833	chr6	32626204	32626205	rs6905837	32390946	Liu L	2020-04-22	Front Endocrinol (Lausanne)	Twelve New Genomic Loci Associated With Bone Mineral Density.	Heel bone mineral density (MTAG)	426,824 individuals	NA	6p21.32	NR	rs6905837-C	0.95	3E-8		0.03	[0.018-0.042] unit decrease	NR [7369691] (imputed)	N
833	chr6	32626248	32626249	rs6928482	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals, at least 88,461 European ancestry individuals	NA	6p21.32	HLA-DQB1	rs6928482-T	0.542	1E-6	(EA)	0.018571429	[0.011-0.026] unit increase	Illumina [1986983] (imputed)	N
833	chr6	32626271	32626272	rs9273363	30659077	Onengut-Gumuscu S	2019-01-18	Diabetes Care	Type 1 Diabetes Risk in African-Ancestry Participants and Utility of an Ancestry-Specific Genetic Risk Score.	Type 1 diabetes	1,021 African American cases, 2,928 African American controls	NA	6p21.32	MHC	rs9273363-A	0.13	5E-138		5.48	[4.80-6.27]	Illumina [114874]	N
833	chr6	32626271	32626272	rs9273363	23770605	Berndt SI	2013-06-16	Nat Genet	Genome-wide association study identifies multiple risk loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	2,179 European ancestry cases, 6,221 European ancestry controls	1,709 European ancestry cases, 6,318 European ancestry controls	6p21.32	HLA	rs9273363-A	0.27	2E-10		1.24	[NR]	Illumina [549934]	N
833	chr6	32626301	32626302	rs9273364	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Carpal tunnel syndrome	18,855 European ancestry cases, 461,346 European ancestry controls, 192 East Asian ancestry cases, 178,534 East Asian ancestry controls	NA	6p21.32		rs9273364-G	NR	1E-8		0.0702	[0.046-0.094] unit increase	Affymetrix, Illumina [25844227] (imputed)	N
833	chr6	32626301	32626302	rs9273364	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 29,0641 European ancestry controls	NA	6p21.32	HLA-DQB1	rs9273364-G	0.302909	3E-75		0.23193699	[0.21-0.26] unit increase	Affymetrix [7288503] (imputed)	N
833	chr6	32626310	32626311	rs6906021	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Angiopoietin-1 receptor levels	21,758 European ancestry individuals	9,173 individuals	6p21.32		rs6906021-T	0.56	8E-14		0.0626	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
833	chr6	32626310	32626311	rs6906021	23817571	Bonnelykke K	2013-06-30	Nat Genet	Meta-analysis of genome-wide association studies identifies ten loci influencing allergic sensitization.	Allergic sensitization	5,789 European ancestry cases, 10,056 European ancestry controls	6,114 European ancestry cases, 9,920 European ancestry controls	6p21.32	HLA-DQB1, HLA-DQA1	rs6906021-C	0.45	2E-12		1.15	[1.11-1.2]	Affymetrix, Illumina [~ 2500000] (imputed)	N
833	chr6	32626310	32626311	rs6906021	23817569	Hinds DA	2013-06-30	Nat Genet	A genome-wide association meta-analysis of self-reported allergy identifies shared and allergy-specific susceptibility loci.	Self-reported allergy	53,862 European ancestry individuals	NA	6p21.32	HLA-DQB1, HLA-DQA1	rs6906021-C	0.4749	7E-15		0.0945	[0.071-0.118] unit increase	Illumina [2400000] (imputed)	N
833	chr6	32626347	32626348	rs28407950	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6p21.32	NR	rs28407950-C	0.7564	7E-45		1.1032656	[1.09-1.12]	Affymetrix [15688218] (imputed)	N
833	chr6	32626347	32626348	rs28407950	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic disease (asthma, hay fever or eczema)	106,772 European ancestry cases, 239,773 European ancestry controls	83,335 cases, 34,934 controls	6p21.32	NR	rs28407950-C	0.7564	7E-70		1.1201972	[1.11-1.13]	Affymetrix [15688218] (imputed)	N
833	chr6	32626347	32626348	rs28407950	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (childhood onset)	9,433 British ancestry cases, 318,237 British ancestry controls	NA	6p21.32	HLA-DQA1, HLA-DQB	rs28407950-C	0.756	1E-59		1.354	[1.306-1.405]	Affymetrix [10894596] (imputed)	N
833	chr6	32626347	32626348	rs28407950	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (adult onset)	21,564 British ancestry cases, 318,237 British ancestry controls	NA	6p21.32	HLA-DQA1, HLA-DQB	rs28407950-C	0.756	8E-31		1.148	[1.121-1.175]	Affymetrix [10894596] (imputed)	N
833	chr6	32626347	32626348	rs28407950	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (antihistamines for systemic use)	13,984 European ancestry cases, 137,652 European ancestry controls	NA	6p21.32	HLA-DQB1	rs28407950-T	0.243266	1E-10		0.094664484	[0.066-0.123] unit decrease	Affymetrix [7288503] (imputed)	N
833	chr6	32626402	32626403	rs34004019	30013184	Waage J	2018-07-16	Nat Genet	Genome-wide association and HLA fine-mapping studies identify risk loci and genetic pathways underlying allergic rhinitis.	Allergic rhinitis	59,762 European and unknown ancestry cases, 152,358 European and unknown ancestry controls	60,720 European ancestry cases, 618,527 European ancestry controls	6p21.32	HLA-DQB1, HLA-DQA1	rs34004019-A	0.7331	1E-30		1.1235955	[1.11-1.15]	Affymetrix, Illumina, Perlegen [16531985] (imputed)	N
833	chr6	32626402	32626403	rs34004019	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	6p21.32	HLA-DQA1, HLA-DQB1	rs34004019-A	0.7	4E-52		1.101	[1.09-1.11]	Affymetrix, Illumina [8307659] (imputed)	N
833	chr6	32626402	32626403	rs34004019	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Allergy	66,973 European ancestry cases, 113,768 European ancestry controls	NA	6p21.32	HLA-DQB1, HLA-DQA1	rs34004019-?	NR	3E-24		1.1086475	[1.09-1.13]	Illumina [12845910] (imputed)	N
833	chr6	32626437	32626438	rs9273367	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 1 diabetes	6,447 European ancestry cases, 451,248 European ancestry controls, 1,219 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	6p21.32		rs9273367-T	NR	6E-306		0.7272	[0.69-0.77] unit increase	Affymetrix, Illumina [25837106] (imputed)	N
833	chr6	32626450	32626451	rs28414666	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	6p21.32		rs28414666-A	0.134651377	2E-27		0.1486309	[0.12-0.18] unit increase	Illumina [13429980] (imputed)	N
833	chr6	32626474	32626475	rs9273368	34737425	Mansour Aly D	2021-11-04	Nat Genet	Genome-wide association analyses highlight etiological differences underlying newly defined subtypes of diabetes.	Severe autoimmune type 2 diabetes	452 Scandinavian ancestry cases, 2,744 Scandinavian ancestry controls	NA	6p21.32	HLA-DQA1, HLA-DQB1	rs9273368-A	0.350323	7E-40		2.678	[2.314 - 3.1]	Illumina [5396854] (imputed)	N
833	chr6	32626474	32626475	rs9273368	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	6p21.32		rs9273368-A	NR	2E-49		0.1157	[0.1-0.13] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
833	chr6	32626474	32626475	rs9273368	30254083	Cousminer DL	2018-09-25	Diabetes Care	First Genome-Wide Association Study of Latent Autoimmune Diabetes in Adults Reveals Novel Insights Linking Immune and Metabolic Diabetes.	Latent autoimmune diabetes vs. type 2 diabetes	2,779 European ancestry latent autoimmune diabetes cases, 10,396 European ancestry type 2 diabetes cases	NA	6p21.32	HLA-DQB1	rs9273368-?	0.301	3E-78		2.439	[2.222-2.676]	Affymetrix, Illumina [8328843] (imputed)	N
833	chr6	32626474	32626475	rs9273368	30254083	Cousminer DL	2018-09-25	Diabetes Care	First Genome-Wide Association Study of Latent Autoimmune Diabetes in Adults Reveals Novel Insights Linking Immune and Metabolic Diabetes.	Latent autoimmune diabetes vs. type 1 diabetes	2,454 European ancestry latent autoimmune diabetes cases, 968 European ancestry type 1 diabetes cases	NA	6p21.32	HLA-DQB1	rs9273368-G	0.35	8E-40		2.99	[2.60-3.91]	Affymetrix, Illumina [8465706] (imputed)	N
833	chr6	32626491	32626492	rs9273370	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Hypothyroidism	17,558 European ancestry cases, 117,083 European ancestry controls	NA	6p21.32	HLA-DQA1, HLA-DQB1	rs9273370-?	NR	5E-34		1.1737089	[1.14-1.20]	Illumina [13676411] (imputed)	N
833	chr6	32626573	32626574	rs28539606	33731350	Nandakumar P	2021-03-17	Sci Adv	Nuclear genome-wide associations with mitochondrial heteroplasmy.	Mitochondrial heteroplasmy measurement	982,072 European ancestry individuals	NA	6p21.32	HLA-DQB1	rs28539606-G	0.147	4E-23		0.02	[0.016-0.024] unit increase	NR [57525634] (imputed)	N
833	chr6	32626600	32626601	rs9273373	24388013	Ferreira MA	2013-12-30	J Allergy Clin Immunol	Genome-wide association analysis identifies 11 risk variants associated with the asthma with hay fever phenotype.	Asthma and hay fever	6,685 European ancestry cases, 14,091 European ancestry controls	878 European ancestry cases, 2,455 European ancestry controls	6p21.32	HLA-DQB1	rs9273373-G	0.54	4E-14		1.24	[1.17-1.30]	Illumina [up to 4972397] (imputed)	N
833	chr6	32626613	32626614	rs9273374	29785011	Zhu Z	2018-05-21	Nat Genet	A genome-wide cross-trait analysis from UK Biobank highlights the shared genetic architecture of asthma and allergic diseases.	Asthma or allergic disease (pleiotropy)	14,085 European asthma cases, 25,685 European ancestry allergic diseases cases, 76,768 European ancestry controls	NA	6p21.32	HLA-DOB, HLA-DQA1, HLA-DQA2, HLA-DQB1, HLA-DQB2, HLA-DRB1, HLA-DRB6, TAP2	rs9273374-?	NR	8E-35		1.1904762		NR [74888535] (imputed)	N
833	chr6	32626738	32626739	rs12055445	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQB1	rs12055445-A	NR	2E-8		0.0159074	[0.01-0.021] unit increase	Affymetrix [321016] (imputed)	N
833	chr6	32626738	32626739	rs12055445	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DQB1	rs12055445-G	NR	1E-12		0.0218742	[0.016-0.028] unit decrease	Affymetrix [323123] (imputed)	N
833	chr6	32626738	32626739	rs12055445	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	6p21.32	NR	rs12055445-A	0.500659	5E-18		0.0175207	[0.014-0.021] unit decrease	NR [NR]	N
833	chr6	32626738	32626739	rs12055445	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling worry	372,869 European ancestry individuals	NA	6p21.32	HLA-DRA	rs12055445-A	0.498063	3E-12		6.996	unit decrease	NR [10847151] (imputed)	N
833	chr6	32626738	32626739	rs12055445	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	6p21.32	HLA-DQA1, HLA-DQB1	rs12055445-G	0.513	6E-11		0.0247074	[0.017-0.032] unit decrease	Illumina [13519193] (imputed)	N
833	chr6	32626785	32626786	rs9273375	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DQB1	rs9273375-G	NR	9E-11		0.0262281	[0.018-0.034] unit increase	Affymetrix [323123] (imputed)	N
833	chr6	32626880	32626881	rs9273379	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Alanine aminotransferase levels in excessive alcohol consumption	951 individuals	NA	6p21.32	NR	rs9273379-?	NR	2E-6		0.0267	[0.016-0.038] unit decrease	Illumina [~ 7800000] (imputed)	N
833	chr6	32626951	32626952	rs4713572	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs4713572-C	0.411	2E-15	(Rac GTPase-activating protein 1, RACGAP1.13587.10.3)	0.21	[0.15-0.27] unit increase	Affymetrix [10572788] (imputed)	N
833	chr6	32626976	32626977	rs9273386	34103634	Valette K	2021-06-08	Commun Biol	Prioritization of candidate causal genes for asthma in susceptibility loci derived from UK Biobank.	Asthma	56,167 White-British ancestry cases, 352,255 White-British ancestry controls	NA	6p21.32	HLA-DQA1, HLA-DQB1	rs9273386-C	0.588625259859572	2E-48		0.13383532	[0.12-0.15] unit increase	Affymetrix [35186738] (imputed)	N
833	chr6	32626983	32626984	rs4713573	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Juvenile rheumatoid arthritis	216 European ancestry cases, 409,001 European ancestry controls, 110 East Asian ancestry cases, 173,268 East Asian ancestry controls	NA	6p21.32		rs4713573-C	NR	3E-9		0.5903	[0.39-0.79] unit increase	Affymetrix, Illumina [25833140] (imputed)	N
833	chr6	32627090	32627091	rs28724231	30552173	Aterido A	2018-12-14	Ann Rheum Dis	Genetic variation at the glycosaminoglycan metabolism pathway contributes to the risk of psoriatic arthritis but not psoriasis.	Psoriatic arthritis	744 Spanish ancestry cases, 1,454 Spanish ancestry controls	1,430 cases, 1,417 controls	6p21.32	NR	rs28724231-?	NR	4E-11		6.62	[NR] z-score decrease	Illumina [1387382] (imputed)	N
833	chr6	32627128	32627129	rs9273401	27189021	Cook JP	2016-05-18	Eur J Hum Genet	Multi-ethnic genome-wide association study identifies novel locus for type 2 diabetes susceptibility.	Type 2 diabetes	746 African American cases, 2,825 African American controls, 743 East Asian ancestry cases, 3,992 East Asian ancestry controls, 7,111 European ancestry cases, 49,688 European ancestry controls, 1,147 Latino cases, 5,352 Latino controls	12,171 European ancestry cases, 56,862 European ancestry controls	6p21.32	MHC	rs9273401-G	0.112	2E-9		1.16	[1.11-1.22]	NR [at least 8497425] (imputed)	N
833	chr6	32627159	32627160	rs9273404	31816047	Boutin TS	2019-12-09	Hum Mol Genet	Insights into the genetic basis of retinal detachment.	Cataracts (operation)	21,679 British ancestry cases, 387,283 British ancestry controls	NA	6p21.32	HLA-DQB1	rs9273404-?	0.469	3E-8		1.0600239	[1.04-1.08]	Affymetrix [NR] (imputed)	N
833	chr6	32627159	32627160	rs9273404	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	6p21.32	HLA-DQB1	rs9273404-G	0.47	2E-11	(conditional on rs2070600)	1.08	[NR]	Affymetrix, Illumina [6224355] (imputed)	N
833	chr6	32627249	32627250	rs9273410	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p21.32	NR	rs9273410-A	0.44	7E-16		1.15	[1.11-1.19]	Affymetrix [9886854] (imputed)	N
833	chr6	32627249	32627250	rs9273410	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p21.32	NR	rs9273410-A	0.44	3E-22			[NR]	Affymetrix [9886854] (imputed)	N
833	chr6	32627249	32627250	rs9273410	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p21.32	NR	rs9273410-A	0.44	2E-21		1.13	[1.1-1.16]	Affymetrix [9886854] (imputed)	N
833	chr6	32627249	32627250	rs9273410	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p21.32	NR	rs9273410-A	0.44	7E-22			[NR]	Affymetrix [9886854] (imputed)	N
833	chr6	32627249	32627250	rs9273410	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in non-current smokers	16,488 European ancestry cases, 169,688 European ancestry controls	NA	6p21.32	NR	rs9273410-A	0.44	3E-21		1.13	[1.1-1.16]	Affymetrix [9886854] (imputed)	N
833	chr6	32627249	32627250	rs9273410	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in never smokers	8,631 European ancestry cases, 120,544 European ancestry controls	NA	6p21.32	NR	rs9273410-A	0.44	9E-16		1.15	[1.11-1.19]	Affymetrix [9886854] (imputed)	N
833	chr6	32627249	32627250	rs9273410	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in ever smokers	12,446 European ancestry cases, 59,145 European ancestry controls	NA	6p21.32	NR	rs9273410-A	0.44	3E-9		1.1	[1.06-1.13]	Affymetrix [9886854] (imputed)	N
833	chr6	32627249	32627250	rs9273410	30552067	Shrine N	2018-12-11	Lancet Respir Med	Moderate-to-severe asthma in individuals of European ancestry: a genome-wide association study.	Asthma (moderate or severe)	5,135 European ancestry cases, 25,675 European ancestry controls	5,414 European ancestry cases, 21,471 European ancestry controls	6p21.32	HLA-DQB1	rs9273410-A	0.5529999999999999	6E-32		1.21	[1.17-1.25]	Affymetrix [33771858] (imputed)	N
833	chr6	32627455	32627456	rs9273429	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQB1	rs9273429-G	NR	6E-9		0.0188118	[0.012-0.025] unit decrease	Affymetrix [319769] (imputed)	N
833	chr6	32627479	32627480	rs1064173	32534018	Liu X	2020-06-10	Brain Behav Immun	Genetic factors underlying the bidirectional relationship between autoimmune and mental disorders - findings from a Danish population-based study.	Autoimmune traits	1,383 Danish ancestry cases, 62,656 Danish ancestry controls	NA	6p21.32	NR	rs1064173-A	0.25	3E-36		1.8	[1.64-1.96]	NR [7721839] (imputed)	N
833	chr6	32627699	32627700	rs6689	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	6p21.32		rs6689-G	NR	1E-44		0.0349	[0.03-0.04] unit increase	Affymetrix, Illumina [20536134] (imputed)	N
833	chr6	32627699	32627700	rs6689	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	135,808 East Asian ancestry individuals	NA	6p21.32		rs6689-G	0.191232	2E-10		0.0291023	[0.02-0.038] unit increase	Illumina [13476599] (imputed)	N
833	chr6	32627699	32627700	rs6689	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	6p21.32	NR	rs6689-?	NR	7E-11				Affymetrix [~ 8270000] (imputed)	N
833	chr6	32627699	32627700	rs6689	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs6689-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
833	chr6	32627713	32627714	rs1063355	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	6p21.32	HLA-DQB1	rs1063355-T	0.397563657636028	4E-19		0.0709	[0.055-0.086] unit decrease	NR [5035015] (imputed)	N
833	chr6	32627713	32627714	rs1063355	24837172	Juyal G	2014-05-16	Gut	Genome-wide association scan in north Indians reveals three novel HLA-independent risk loci for ulcerative colitis.	Ulcerative colitis	603 North Indian ancestry cases, 622 North Indian ancestry controls	733 North Indian ancestry cases, 1,148 North Indian ancestry controls	6p21.32	HLA-DQB1, HLA-DRA, HLA-DQA1	rs1063355-A	NR	2E-6		1.43	[1.23-1.66]	Illumina [480391]	N
833	chr6	32627794	32627795	rs1766	33204752	Butler-Laporte G	2020-09-24	Open Forum Infect Dis	Genetic Determinants of Antibody-Mediated Immune Responses to Infectious Diseases Agents: A Genome-Wide and HLA Association Study.	Anti-varicella zoster virus IgG seropositivity	8,735 White British ancestry individuals	NA	6p21.32	HLA-DQB1	rs1766-A	0.53	1E-11		0.04	unit decrease	NR [25472218] (imputed)	N
833	chr6	32627832	32627833	rs1770	34212547	An J	2021-07-01	Allergy Asthma Immunol Res	Genome-Wide Association Study of Korean Asthmatics: A Comparison With UK Asthmatics.	Adult asthma	1,386 Korean ancestry cases, 5,205 Korean ancestry controls	NA	6p21.32		rs1770-G	0.17	5E-10		1.41	[1.27-1.58]	Affymetrix [4922160] (imputed)	N
833	chr6	32627832	32627833	rs1770	31152121	Zhu M	2019-05-31	Diabetes Care	Identification of Novel T1D Risk Loci and Their Association With Age and Islet Function at Diagnosis in Autoantibody-Positive T1D Individuals: Based on a Two-Stage Genome-Wide Association Study.	Type 1 diabetes	1,005 Han Chinese ancestry cases, 1,257 Han Chinese ancestry controls	1,378 Han Chinese ancestry cases, 3,774 Han Chinese ancestry controls	6p21.32	HLA-DQB1	rs1770-G	0.46	2E-232		4.28	[3.92-4.68]	Illumina [787224] (imputed)	N
833	chr6	32627922	32627923	rs1063348	29903748	Debiec H	2018-06-14	J Am Soc Nephrol	Transethnic, Genome-Wide Analysis Reveals Immune-Related Risk Alleles and Phenotypic Correlates in Pediatric Steroid-Sensitive Nephrotic Syndrome.	Childhood steroid-sensitive nephrotic syndrome	56 African cases, 454 African controls	NA	6p21.32	HLA-DQB1	rs1063348-?	0.48	3E-7		3.24	[1.93-5.45]	Illumina [at least 7529344] (imputed)	N
833	chr6	32627922	32627923	rs1063348	29903748	Debiec H	2018-06-14	J Am Soc Nephrol	Transethnic, Genome-Wide Analysis Reveals Immune-Related Risk Alleles and Phenotypic Correlates in Pediatric Steroid-Sensitive Nephrotic Syndrome.	Childhood steroid-sensitive nephrotic syndrome	244 European ancestry cases, 2,552 European ancestry controls, 56 African cases, 454 African controls, 85 Maghrebian cases, 261 Maghrebian controls	NA	6p21.32	HLA-DQB1	rs1063348-G	0.60	9E-23		3.33	[2.62-4.23]	Illumina [at least 7529344] (imputed)	N
833	chr6	32627922	32627923	rs1063348	29903748	Debiec H	2018-06-14	J Am Soc Nephrol	Transethnic, Genome-Wide Analysis Reveals Immune-Related Risk Alleles and Phenotypic Correlates in Pediatric Steroid-Sensitive Nephrotic Syndrome.	Childhood steroid-sensitive nephrotic syndrome	132 European ancestry cases, 2,000 European ancestry controls	NA	6p21.32	HLA-DQB1	rs1063348-?	0.61	1E-8		2.96	[2.04-4.29]	Illumina [at least 7529344] (imputed)	N
833	chr6	32627937	32627938	rs36205178	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Scarlet fever	6,812 European ancestry cases, 113,837 European ancestry controls	NA	6p21.32	HLA-DQB1	rs36205178-C	0.81	9E-14		1.24	[1.21-1.28]	Illumina [at least 560000] (imputed)	N
833	chr6	32628083	32628084	rs2854277	29899525	Klimentidis YC	2018-06-13	Int J Obes (Lond)	Genome-wide association study of habitual physical activity in over 377,000 UK Biobank participants identifies multiple variants including CADM2 and APOE.	Moderate to vigorous physical activity levels	377,234 European ancestry individuals	NA	6p21.32	HLA-DQB1	rs2854277-C	0.92	3E-10		0.032	unit increase	Affymetrix [11800000] (imputed)	N
833	chr6	32628138	32628139	rs9273484	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Agathobacter sp000434275 abundance in stool	5,959 Finnish ancestry individuals	NA	6p21.32		rs9273484-A	0.26703	4E-9		0.114715	[0.077-0.153] unit decrease	Illumina [7980478] (imputed)	N
833	chr6	32628148	32628149	rs9273487	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.32		rs9273487-A	0.824	4E-20				Affymetrix [10369434] (imputed)	N
833	chr6	32628341	32628342	rs9273500	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DQB1, HLA-DQB1-AS1, XXbac-BPG254F23.6	rs9273500-T	NR	2E-9		0.0229852	[0.015-0.031] unit increase	Affymetrix [323123] (imputed)	N
833	chr6	32628360	32628361	rs9273501	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs9273501-A	NR	9E-16		1.1098778	[1.08-1.14]	Affymetrix [7846216] (imputed)	N
833	chr6	32628427	32628428	rs2854275	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma and major depressive disorder	46,802 European ancestry asthma cases, 59,851 European ancestry major depressive disorder cases, 460,635 European ancestry controls	NA	6p21.32	HLA-DOB, HLA-DQA1, HLA-DQA2, HLA-DQB1, HLA-DQB2, TAP2	rs2854275-?	NR	3E-13				Affymetrix [up to 13554551] (imputed)	N
833	chr6	32628427	32628428	rs2854275	23326239	Rubicz R	2013-01-10	PLoS Genet	A genome-wide integrative genomic study localizes genetic factors influencing antibodies against Epstein-Barr virus nuclear antigen 1 (EBNA-1).	Epstein-Barr virus immune response (EBNA-1)	1,367 Mexican American indivduals	589 Mexican American indivduals	6p21.32	PSORS1C1, BAT2, EHMT2, HLA-DQB1, C6orf15, BAT4, NOTCH4, PRRT1, HLA-B	rs2854275-T	0.064	2E-10	(Conditional on rs477515 - Quantitative)	0.45	[NR] unit decrease	Illumina [944565]	N
833	chr6	32628537	32628539	rs201043192	26423011	Wain LV	2015-09-27	Lancet Respir Med	Novel insights into the genetics of smoking behaviour, lung function, and chronic obstructive pulmonary disease (UK BiLEVE): a genetic association study in UK Biobank.	Lung function (low FEV1 vs high FEV1)	19,493 European ancestry individuals with low FEV1 measurements, 9,808 European ancestry individuals with high FEV1 measurements	NA	6p21.32	HLA-DQB1	rs201043192-A	NR	5E-9		0.114	[0.077-0.151] unit increase	Affymetrix [28509962] (imputed)	N
833	chr6	32628659	32628660	rs28688207	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Sarcoidosis	1,718 European ancestry cases, 484,955 European ancestry controls, 220 East Asian ancestry cases, 177,667 East Asian ancestry controls	NA	6p21.32		rs28688207-C	NR	1E-15		0.7435	[0.56-0.93] unit increase	Affymetrix, Illumina [25845061] (imputed)	N
833	chr6	32628811	32628812	rs9273542	31263063	Dufek S	2019-07-01	J Am Soc Nephrol	Genetic Identification of Two Novel Loci Associated with Steroid-Sensitive Nephrotic Syndrome.	Childhood steroid-sensitive nephrotic syndrome	422 European ancestry cases, 5,642 European ancestry controls	NA	6p21.32	HLA-DQB1	rs9273542-T	0.24	2E-43		3.39	[2.86-4.03]	Illumina [5216266] (imputed)	N
833	chr6	32628906	32628907	rs3828785	27560520	Shaffer JR	2016-08-25	PLoS Genet	Genome-Wide Association Study Reveals Multiple Loci Influencing Normal Human Facial Morphology.	Eye morphology	2,447 European ancestry individuals	671 European ancestry individuals	6p21.32	Intergenic	rs3828785-A	0.03169	2E-7	(Outercanthal width)	1.449	[0.91-1.99] unit decrease	Illumina [34985077] (imputed)	N
833	chr6	32628914	32628915	rs28724235	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.32		rs28724235-T	0.934	1E-16				Affymetrix [10369434] (imputed)	N
833	chr6	32628915	32628916	rs9273552	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs9273552-A	0.07	2E-31	(Ubiquitin carboxyl-terminal hydrolase 25, USP25.9215.117.3)	0.62	[0.52-0.72] unit increase	Affymetrix [10572788] (imputed)	N
833	chr6	32629065	32629066	rs28724238	32488134	Auckland K	2020-06-02	Sci Rep	The Human Leukocyte Antigen Locus and Rheumatic Heart Disease Susceptibility in South Asians and Europeans.	Rheumatic heart disease	510 Northern Indian cases, 344 Northern Indian controls, 162 Fijian Indian cases, 147 Fijian Indian controls	150 European ancestry cases, 1,309 European ancestry controls	6p21.32	HLA-DQB1	rs28724238-?		2E-7		1.75	[1.42-2.15]	Illumina [6925553] (imputed)	N
833	chr6	32629330	32629331	rs28724242	32589924	Bi W	2020-06-23	Am J Hum Genet	A Fast and Accurate Method for Genome-Wide Time-to-Event Data Analysis and Its Application to UK Biobank.	Essential hypertension (time to event)	76,566 British ancestry cases, 206,305 British ancestry controls	NA	6p21.32	HLA-DQB142	rs28724242-?	NR	4E-8				NR [~ 24000000] (imputed)	N
833	chr6	32629858	32629859	rs1049130	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQB1, XXbac-BPG254F23.6	rs1049130-A	NR	1E-11		0.0190514	[0.014-0.025] unit increase	Affymetrix [321016] (imputed)	N
833	chr6	32629888	32629889	rs1049087	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hypothyroidism	1,114 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	6p21.32		rs1049087-A	0.609286629	4E-8		0.24121252	[0.16-0.33] unit increase	Illumina [13429045] (imputed)	N
833	chr6	32629888	32629889	rs1049087	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Lymphocytic leukemia	852 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs1049087-A	NR	7E-7		1.2743725	NR	Affymetrix [7846216] (imputed)	N
833	chr6	32630158	32630159	rs9274096	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.32		rs9274096-A	0.604	1E-14				Affymetrix [10369434] (imputed)	N
833	chr6	32630586	32630587	rs36174316	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on IgD- CD24- B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs36174316-T	0.35176	3E-9		0.1724	[0.12-0.23] unit increase	Illumina [18238311] (imputed)	N
833	chr6	32630896	32630897	rs191548708	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Sarcoidosis	220 East Asian ancestry cases, 177,667 East Asian ancestry controls	NA	6p21.32		rs191548708-C	0.185964776	4E-9		0.78615963	[0.53-1.05] unit increase	Illumina [13429855] (imputed)	N
833	chr6	32631043	32631044	rs9274220	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p21.32		rs9274220-G	0.832	6E-16				Affymetrix [10369434] (imputed)	N
833	chr6	32631206	32631207	rs9274235	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	6p21.32	HLA-DQB1	rs9274235-T	0.3487	4E-9		0.02287324	[0.015-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
833	chr6	32631294	32631295	rs9274247	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	6p21.32	HLA-DQB1	rs9274247-A	0.3212	3E-35		0.0372	[0.031-0.043] unit decrease	Affymetrix [19819130] (imputed)	N
833	chr6	32631294	32631295	rs9274247	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	6p21.32	HLA-DQB1	rs9274247-A	0.3212	1E-56		0.0469	[0.041-0.053] unit decrease	Affymetrix [19819130] (imputed)	N
833	chr6	32631294	32631295	rs9274247	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	6p21.32	HLA-DQB1	rs9274247-A	0.3212	7E-28		0.0316	[0.026-0.037] unit decrease	Affymetrix [19819130] (imputed)	N
833	chr6	32631382	32631390	rs142471762	28334935	Raffield LM	2017-05-15	Hum Mol Genet	Genome-wide association study of iron traits and relation to diabetes in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL): potential genomic intersection of iron and glucose regulation?	Iron status biomarkers (iron levels)	12,580 Hispanic/Latino individuals	NA	6p21.32	HLA-DQB1	rs142471762-AATATTAGG	NR	4E-7		0.29	[0.18-0.4] unit decrease	Illumina [27700000] (imputed)	N
833	chr6	32631957	32631958	rs9274299	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.32	HLA-DQA1, HLA-DQA2, HLA-DQB1, HLA-DQB2, MIR3135B	rs9274299-?		4E-13		1.1111112	[1.08-1.14]	Affymetrix, Illumina [NR]	N
833	chr6	32632212	32632213	rs71542462	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	6p21.32		rs71542462-G	0.738074	2E-9		0.0306313	[0.021-0.041] unit decrease	NR [11722792] (imputed)	N
833	chr6	32632366	32632367	rs9274346	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	6p21.32	HLA-DQB1	rs9274346-C	0.607966	3E-14		0.0152666	[0.011-0.019] unit decrease	Affymetrix [NR] (imputed)	N
833	chr6	32632385	32632386	rs67842782	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p21.32		rs67842782-C	0.852	5E-9				Affymetrix [10369434] (imputed)	N
833	chr6	32632446	32632447	rs41263822	33893285	Guindo-Martinez M	2021-04-23	Nat Commun	The impact of non-additive genetic associations on age-related complex diseases.	Cancer	17,131 European ancestry cases, 39,506 European ancestry controls	NA	6p21.32		rs41263822-A	0.420574	2E-10		1.1		Affymetrix [15611556] (imputed)	N
833	chr6	32632482	32632483	rs9274361	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DQB1	rs9274361-A	NR	7E-10		0.020516	[0.014-0.027] unit decrease	Affymetrix [321169] (imputed)	N
833	chr6	32632586	32632587	rs1130397	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	6p21.32		rs1130397-A	0.81619	7E-22		0.0518638	[0.041-0.062] unit decrease	NR [11722792] (imputed)	N
833	chr6	32632586	32632587	rs1130397	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.32		rs1130397-A	0.816	8E-23				Affymetrix [10369434] (imputed)	N
833	chr6	32632597	32632598	rs17412833	26838040	Kristjansson RP	2016-02-03	Nat Commun	Common and rare variants associating with serum levels of creatine kinase and lactate dehydrogenase.	Lactate dehydrogenase levels	98,585 Icelandic ancestry individuals	NA	6p21.32		rs17412833-T	0.1376	2E-22		0.07	unit increase	Illumina [28300000] (imputed)	N
833	chr6	32632634	32632635	rs9274384	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs9274384-A	0.727	5E-31	(conditional)	1.415	[1.36-1.47]	Illumina [11270530] (imputed)	N
833	chr6	32632658	32632659	rs9274390	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	6p21.32	HLA-DQB1	rs9274390-C	0.855414	1E-18		0.030104	[0.023-0.037] unit increase	Affymetrix [NR] (imputed)	N
833	chr6	32632658	32632659	rs9274390	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.32	HLA-DQB1	rs9274390-T		2E-14		1.13	[1.09-1.16]	Affymetrix, Illumina [NR]	N
833	chr6	32632688	32632689	rs41552812	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	6p21.32	HLA-DQB1	rs41552812-C	0.92962	3E-29		0.0565596	[0.047-0.066] unit increase	Affymetrix [NR] (imputed)	N
833	chr6	32632782	32632783	rs1140310	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pollinosis	18,593 East Asian ancestry cases, 153,666 East Asian ancestry controls	NA	6p21.32		rs1140310-C	0.301582347	8E-13		0.09507005	[0.069-0.121] unit decrease	Illumina [13429010] (imputed)	N
833	chr6	32632831	32632832	rs9274407	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQB1	rs9274407-A	NR	3E-9		0.0226345	[0.015-0.03] unit decrease	Affymetrix [319769] (imputed)	N
833	chr6	32632831	32632832	rs9274407	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DQB1	rs9274407-A	NR	5E-9		0.0222139	[0.015-0.03] unit decrease	Affymetrix [319769] (imputed)	N
833	chr6	32632831	32632832	rs9274407	21570397	Lucena MI	2011-04-12	Gastroenterology	Susceptibility to amoxicillin-clavulanate-induced liver injury is influenced by multiple HLA class I and II alleles.	Drug-induced liver injury (amoxicillin-clavulanate)	201 European ancestry cases, 532 European ancestry controls	NA	6p21.32	HLA-DRB1-DQB1	rs9274407-?	NR	5E-14		3.1	[2.30-4.20]	Illumina [822927]	N
833	chr6	32632886	32632887	rs201184533	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	6p21.32	HLA-DQB1	rs201184533-C	NR	9E-17		1.263	[1.21-1.32]	Affymetrix [9000000] (imputed)	N
833	chr6	32632889	32632890	rs281862010	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6p21.32		rs281862010-C	0.902103	9E-10		0.048298	[0.033-0.064] unit decrease	NR [11722792] (imputed)	N
833	chr6	32632889	32632890	rs281862010	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs281862010-G	0.103	4E-21	(HLA class II histocompatibility antigen, DQ alpha 2 chain, HLA.DQA2.7757.5.3)	0.44	[0.34-0.54] unit increase	Affymetrix [10572788] (imputed)	N
833	chr6	32632994	32632995	rs41263828	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.32	NR	rs41263828-?	NR	1E-10				Affymetrix [~ 8270000] (imputed)	N
833	chr6	32633064	32633065	rs28746806	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DQB1	rs28746806-C	NR	1E-14		0.0253727	[0.019-0.032] unit decrease	Affymetrix [323123] (imputed)	N
833	chr6	32633230	32633231	rs9274442	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	6p21.32		rs9274442-C	NR	8E-142		0.0773	[0.071-0.083] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
833	chr6	32633246	32633247	rs28746814	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	6p21.32	HLA-DQB1	rs28746814-T	0.325337	9E-16		0.022020848	[0.017-0.027] unit increase	Affymetrix [93095623] (imputed)	N
833	chr6	32633424	32633425	rs9274461	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.32		rs9274461-T	0.575	1E-14				Affymetrix [10369434] (imputed)	N
833	chr6	32633712	32633713	rs9274477	24204295	Han F	2013-10-31	PLoS Genet	Genome wide analysis of narcolepsy in China implicates novel immune loci and reveals changes in association prior to versus after the 2009 H1N1 influenza pandemic.	Narcolepsy (age of onset)	at least 1,000 Chinese ancestry cases	NA	6p21.32	NR	rs9274477-G	0.292	2E-8		1.82	year decrease	Affymetrix [603382]	N
833	chr6	32633835	32633836	rs41264352	34011352	Schwarm C	2021-05-19	Orphanet J Rare Dis	Identification of two novel bullous pemphigoid- associated alleles, HLA-DQA1*05:05 and -DRB1*07:01, in Germans.	Bullous pemphigoid	438 German cases, 417 German controls	NA	6p21.32	HLA-DQB1	rs41264352-?	NR	4E-10		0.798564	[0.55-1.05] unit increase	Affymetrix [up to 386296] (imputed)	N
833	chr6	32634225	32634226	rs68033958	32141793	Garman L	2020-03-06	Ocul Immunol Inflamm	Genome-Wide Association Study of Ocular Sarcoidosis Confirms HLA Associations and Implicates Barrier Function and Autoimmunity in African Americans.	Ocular sarcoidosis	260 African American cases, 1,551 African American controls	NA	6p21.32	NR	rs68033958-A	NR	1E-6		1.685	[1.36-2.08]	Illumina [13976150] (imputed)	N
833	chr6	32634372	32634373	rs9274522	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 62)	3,566 European ancestry individuals	4,680 European ancestry individuals	6p21.32		rs9274522-T	0.322654941	2E-8				Illumina [7417619] (imputed)	N
833	chr6	32634386	32634387	rs1049055	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TGM3	5,368 Icelandic ancestry individuals	NA	6p21.32		rs1049055-C	0.3996	4E-56		0.302704	[0.27-0.34] unit increase	Illumina [7506463] (imputed)	N
833	chr6	32634386	32634387	rs1049055	32276964	Shete S	2020-04-10	Cancer Res	A genome-wide association study identifies two novel susceptible regions for squamous cell carcinoma of the head and neck.	Oral cavity cancer	631 European ancestry cases, 4,493 European ancestry controls	2,568 European ancestry cases, 3,232 European ancestry controls	6p21.32	HLA-DQB1	rs1049055-T	0.78	3E-9		1.2820514	[1.18-1.39]	Illumina [7858089] (imputed)	N
833	chr6	32634466	32634467	rs3891175	28779025	Alberts R	2017-08-04	Gut	Genetic association analysis identifies variants associated with disease progression in primary sclerosing cholangitis.	Autoimmune hepatitis in primary sclerosing cholangitis	107 European ancestry cases, 3,159 European ancestry controls	NA	6p21.32	HLA-DQB1	rs3891175-?	NR	5E-11		2.41		Illumina [130422] (imputed)	N
833	chr6	32634674	32634675	rs3891173	33893285	Guindo-Martinez M	2021-04-23	Nat Commun	The impact of non-additive genetic associations on age-related complex diseases.	Type 2 diabetes	6,967 European ancestry cases, 49,670 European ancestry controls	NA	6p21.32		rs3891173-T	0.2870184	5E-8		1.14		Affymetrix [15533686] (imputed)	N
833	chr6	32634676	32634677	rs71542467	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	6p21.32		rs71542467-G	0.8462	8E-13		0.0407075	[0.03-0.052] unit decrease	NR [11722792] (imputed)	N
833	chr6	32634676	32634677	rs71542467	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs71542467-G	0.846206	3E-16		0.0452701	[0.034-0.056] unit decrease	NR [11722792] (imputed)	N
833	chr6	32634764	32634765	rs41316204	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs41316204-?	NR	2E-12				Affymetrix [~ 8270000] (imputed)	N
833	chr6	32635000	32635001	rs4993140	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQB1	rs4993140-C	NR	5E-9		0.0217004	[0.014-0.029] unit increase	Affymetrix [319769] (imputed)	N
833	chr6	32635000	32635001	rs4993140	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DQB1	rs4993140-C	NR	6E-9		0.0215826	[0.014-0.029] unit increase	Affymetrix [319769] (imputed)	N
833	chr6	32635000	32635001	rs4993140	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DQB1	rs4993140-C	NR	7E-10		0.0231343	[0.016-0.03] unit increase	Affymetrix [321169] (imputed)	N
833	chr6	32635591	32635592	rs9274600	26423011	Wain LV	2015-09-27	Lancet Respir Med	Novel insights into the genetics of smoking behaviour, lung function, and chronic obstructive pulmonary disease (UK BiLEVE): a genetic association study in UK Biobank.	Lung function in never smokers (low FEV1 vs high FEV1)	9,745 European ancestry individuals with low FEV1 measurements, 4,902 European ancestry individuals with high FEV1 measurements	NA	6p21.32	HLA-DQB1, HLA-DQA2	rs9274600-G	0.472	1E-10		1.18	[1.13-1.25]	Affymetrix [28509962] (imputed)	N
833	chr6	32635902	32635903	rs3828794	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6p21.32	NR	rs3828794-G	0.5206	1E-9		1.0380982	[1.03-1.05]	Affymetrix [15688218] (imputed)	N
833	chr6	32635948	32635949	rs2647025	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	6p21.32	NR	rs2647025-?	NR	4E-99	(conditional)			Affymetrix [15688218] (imputed)	N
833	chr6	32635997	32635998	rs9274623	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	6p21.32	NR	rs9274623-G	NR	6E-19		1.1363636	[NR]	Illumina [7158791] (imputed)	N
833	chr6	32636062	32636063	rs3828800	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DQB1	rs3828800-A	NR	1E-8		0.0236155	[0.016-0.032] unit decrease	Affymetrix [323123] (imputed)	N
833	chr6	32636119	32636120	rs3828805	34642315	Ferreiro-Iglesias A	2021-10-12	Nat Commun	Germline determinants of humoral immune response to HPV-16 protect against oropharyngeal cancer.	Oropharynx cancer and human papilloma virus 16 negative oropharyngeal cancer	2,359 European ancestry cases, 565 European ancestry controls	NA	6p21.32		rs3828805-C	NR	3E-9		1.2999		Illumina [up to 7574753] (imputed)	N
833	chr6	32636119	32636120	rs3828805	27749845	Lesseur C	2016-10-17	Nat Genet	Genome-wide association analyses identify new susceptibility loci for oral cavity and pharyngeal cancer.	Oropharynx cancer	2,506 European ancestry cases, 135 cases, 5,984 European ancestry controls, 601 controls	NA	6p21.32	HLA-DQB1	rs3828805-C	0.720208999141883	2E-12		1.3699		Illumina [7574753] (imputed)	N
833	chr6	32636119	32636120	rs3828805	27749845	Lesseur C	2016-10-17	Nat Genet	Genome-wide association analyses identify new susceptibility loci for oral cavity and pharyngeal cancer.	Oral cavity and pharyngeal cancer	2,717 European ancestry oral cavity cancer cases, 273 oral cavity cancer cases, 2,506 European ancestry oropharynx cancer cases, 135 oropharynx cancer cases, 305 European and unknown ancestry hypopharynx cancer cases, 73 European and unknown ancestry overlapping cases, 25 European and unknown ancestry cases, 5,984 European ancestry controls, 601 controls	NA	6p21.32	HLA-DQB1	rs3828805-C	0.72	3E-13		1.2759		Illumina [7574753] (imputed)	N
833	chr6	32636363	32636364	rs9274657	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.32	HLA-DQA1, HLA-DQB1, HLA-DRB1, HLA-DRB6	rs9274657-A		1E-8		1.07	[1.04-1.09]	Affymetrix, Illumina [NR]	N
833	chr6	32636375	32636376	rs2856698	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	6p21.32		rs2856698-G	NR	1E-158		0.2523	[0.23-0.27] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
833	chr6	32636375	32636376	rs2856698	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	6p21.32	HLA-DQB1	rs2856698-G	0.328285	3E-170		0.2688451	[0.25-0.29] unit increase	Affymetrix [7288503] (imputed)	N
833	chr6	32636384	32636385	rs9274659	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (age of onset)	37,846 British ancestry individuals	NA	6p21.32	NR	rs9274659-A	0.67	7E-18		1.249	[0.96-1.53] unit decrease	Affymetrix [10894596] (imputed)	N
833	chr6	32636494	32636495	rs9461792	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DQB1	rs9461792-A	NR	2E-14		0.0240826	[0.018-0.03] unit increase	Affymetrix [321169] (imputed)	N
833	chr6	32636517	32636518	rs9461793	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	6p21.32	NR	rs9461793-A	0.721618	2E-16		0.0108832	[0.0081-0.0136] unit increase	Affymetrix [16585854] (imputed)	N
833	chr6	32636517	32636518	rs9461793	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	6p21.32	NR	rs9461793-A	0.721618	3E-9		0.0092307	[0.0061-0.0124] unit increase	Affymetrix [16585866] (imputed)	N
833	chr6	32636639	32636640	rs17205409	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.32		rs17205409-T	0.71	8E-19				Affymetrix [10369434] (imputed)	N
833	chr6	32636645	32636646	rs9274678	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	6p21.32	HLA-DQB1	rs9274678-G	0.153747	3E-39		0.0256517	[0.02-0.031] unit increase	Affymetrix [93095623] (imputed)	N
833	chr6	32636695	32636696	rs28371206	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQB1	rs28371206-A	NR	4E-13		0.022406	[0.016-0.028] unit increase	Affymetrix [319769] (imputed)	N
833	chr6	32636695	32636696	rs28371206	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DQB1	rs28371206-A	NR	3E-13		0.0226484	[0.017-0.029] unit increase	Affymetrix [319769] (imputed)	N
833	chr6	32636727	32636728	rs184950714	32581322	Kakuta Y	2020-06-24	Sci Rep	An Integrated Genomic and Transcriptomic Analysis Reveals Candidates of Susceptibility Genes for Crohn's Disease in Japanese Populations.	Crohn's disease	713 Japanese ancestry cases, 2,063 Japanese ancestry controls	NA	6p21.32	HLA	rs184950714-?	NR	1E-17		1.16	[1.12-1.19]	NR [7424691] (imputed)	N
833	chr6	32636727	32636728	rs184950714	30500874	Kakuta Y	2018-11-29	J Crohns Colitis	A genome-wide association study identifying RAP1A as a novel susceptibility gene for Crohn's disease in Japanese individuals.	Crohn's disease	713 Japanese ancestry cases, 2,083 Japanese ancestry controls	770 Japanese ancestry cases, 852 Japanese ancestry controls	6p21.32	HLA-DQB1	rs184950714-?	0.156	4E-19		2.05	NR	NR [4335144] (imputed)	N
834	chr6	32636996	32636997	rs9274695	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQB1	rs9274695-T	NR	5E-9		0.0173565	[0.012-0.023] unit increase	Affymetrix [319769] (imputed)	N
834	chr6	32636996	32636997	rs9274695	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DQB1	rs9274695-T	NR	3E-8		0.0165442	[0.011-0.022] unit increase	Affymetrix [319769] (imputed)	N
834	chr6	32636996	32636997	rs9274695	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DQB1	rs9274695-T	NR	1E-11		0.021862	[0.016-0.028] unit decrease	Affymetrix [323123] (imputed)	N
834	chr6	32637157	32637158	rs17205528	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p21.32	NR	rs17205528-?	NR	3E-12		0.1232	[0.088-0.158] unit increase	Illumina [at least 560000] (imputed)	N
834	chr6	32637212	32637213	rs9274704	31719529	Lyons PA	2019-11-12	Nat Commun	Genome-wide association study of eosinophilic granulomatosis with polyangiitis reveals genomic loci stratified by ANCA status.	Eosinophilic granulomatosis with polyangiitis	534 European ancestry cases, 6,688 European ancestry controls	142 European and unknown ancestry cases, 121 European and unknown ancestry controls	6p21.32	HLA-DQ	rs9274704-?	NR	1E-20		0.7	NR unit increase	Affymetrix [9246221] (imputed)	N
834	chr6	32637412	32637413	rs17205640	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	150,708 East Asian ancestry individuals	NA	6p21.32	NR	rs17205640-T	0.456457	2E-22		0.047325	[0.038-0.057] SD units increase	Affymetrix, Illumina [16709798] (imputed)	N
834	chr6	32637412	32637413	rs17205640	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	149,861 East Asian ancestry individuals	NA	6p21.32	NR	rs17205640-T	0.456482	8E-17		0.040531	[0.031-0.05] SD units increase	Affymetrix, Illumina [16709126] (imputed)	N
834	chr6	32637412	32637413	rs17205640	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	142,940 East Asian ancestry individuals	NA	6p21.32	NR	rs17205640-T	0.455611	1E-14		0.038007	[0.028-0.048] SD units increase	Affymetrix, Illumina [16289021] (imputed)	N
834	chr6	32637469	32637470	rs9274719	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	81,042 East Asian ancestry individuals	NA	6p21.32	NR	rs9274719-T	0.330615	3E-10		0.040123	[0.028-0.053] SD units increase	Affymetrix, Illumina [16286709] (imputed)	N
834	chr6	32637471	32637472	rs17212014	31719529	Lyons PA	2019-11-12	Nat Commun	Genome-wide association study of eosinophilic granulomatosis with polyangiitis reveals genomic loci stratified by ANCA status.	Eosinophilic granulomatosis with polyangiitis (MPO-ANCA positive)	159 European ancestry cases, 6,688 European ancestry controls	43 European and unknown ancestry cases, 121 European and unknown ancestry controls	6p21.32	HLA-DQ	rs17212014-?	NR	1E-41		2.0	NR unit increase	Affymetrix [9246221] (imputed)	N
834	chr6	32637496	32637497	rs3997832	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQB1	rs3997832-C	NR	3E-15		0.022848	[0.017-0.029] unit increase	Affymetrix [319769] (imputed)	N
834	chr6	32637496	32637497	rs3997832	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DQB1	rs3997832-C	NR	5E-15		0.0226927	[0.017-0.028] unit increase	Affymetrix [319769] (imputed)	N
834	chr6	32637572	32637573	rs9274725	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DQB1	rs9274725-T	NR	8E-18		0.0244981	[0.019-0.03] unit increase	Affymetrix [321169] (imputed)	N
834	chr6	32637742	32637743	rs1694129	33768542	Liu Y	2021-03-26	Clin Pharmacol Ther	Class II HLA Variants Associate with Risk of Pegaspargase Hypersensitivity.	Asparaginase hypersensitivity in acute lymphoblastic leukemia	2,168 European ancestry individuals	NA	6p21.32	HLA-DQB1	rs1694129-T	NR	1E-8		2.03	[NR]	Illumina [NR] (imputed)	N
834	chr6	32638174	32638175	rs28746882	33143745	Andlauer TFM	2020-11-04	BMC Med	Treatment- and population-specific genetic risk factors for anti-drug antibodies against interferon-beta: a GWAS.	Binding antibody response to interferon beta therapy in multiple sclerosis (antibody levels; all treatment preparations)	up to 2,000 German and Swedish ancestry individuals	up to 757 German and Swedish ancestry individuals	6p21.32		rs28746882-A	0.08	5E-11	(conditional on rs9272071)	0.27678168	[0.19-0.36] unit increase	Illumina [8550834] (imputed)	N
834	chr6	32638198	32638199	rs11751495	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in IDL	115,082 European ancestry individuals	NA	6p21.32		rs11751495-C	0.972783	2E-10		0.082651	[0.057-0.108] unit decrease	NR [11722792] (imputed)	N
834	chr6	32638198	32638199	rs11751495	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	6p21.32	HLA-DQB1	rs11751495-G	0.027062	6E-16		0.05776946	[0.044-0.072] unit decrease	Affymetrix [93095623] (imputed)	N
834	chr6	32640133	32640134	rs9274845	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium HDL	115,082 European ancestry individuals	NA	6p21.32		rs9274845-C	0.579977	1E-11		0.0273653	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
834	chr6	32640133	32640134	rs9274845	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium HDL	115,082 European ancestry individuals	NA	6p21.32		rs9274845-C	0.579977	6E-13		0.0292315	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
834	chr6	32640133	32640134	rs9274845	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in HDL	115,082 European ancestry individuals	NA	6p21.32		rs9274845-C	0.579977	6E-9		0.0228022	[0.015-0.03] unit decrease	NR [11722792] (imputed)	N
834	chr6	32640133	32640134	rs9274845	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	6p21.32		rs9274845-C	0.579977	1E-8		0.022675	[0.015-0.03] unit decrease	NR [11722792] (imputed)	N
834	chr6	32640133	32640134	rs9274845	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein A1 levels	115,082 European ancestry individuals	NA	6p21.32		rs9274845-C	0.579977	1E-8		0.0226077	[0.015-0.03] unit decrease	NR [11722792] (imputed)	N
834	chr6	32640141	32640142	rs9274846	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium HDL particles	115,082 European ancestry individuals	NA	6p21.32		rs9274846-C	0.579991	3E-10		0.0251988	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
834	chr6	32640141	32640142	rs9274846	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium HDL	115,082 European ancestry individuals	NA	6p21.32		rs9274846-C	0.579991	9E-9		0.0230622	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
834	chr6	32640141	32640142	rs9274846	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	6p21.32		rs9274846-C	0.579991	7E-9		0.023128	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
834	chr6	32641147	32641148	rs9274890	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs9274890-A	0.257	2E-12	(Complement C4, C4A.C4B.4481.34.2)	0.22	[0.16-0.28] unit increase	Affymetrix [10572788] (imputed)	N
834	chr6	32641220	32641221	rs9274903	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs9274903-A	0.266	4E-14	(Complement C4, C4A.C4B.4481.34.2)	0.22	[0.16-0.28] unit increase	Affymetrix [10572788] (imputed)	N
834	chr6	32641877	32641878	rs9274954	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	HLA-DQB1	rs9274954-T	0.366	5E-13	(PAX-interacting protein 1, PAXIP1.12894.3.3)	0.22	[0.16-0.28] unit increase	Affymetrix [10572788] (imputed)	N
834	chr6	32642482	32642483	rs1794484	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lung cancer	4,444 East Asian ancestry cases, 174,282 East Asian ancestry controls	NA	6p21.32		rs1794484-C	0.340651021	5E-10		0.1469222	[0.1-0.19] unit increase	Illumina [13429980] (imputed)	N
834	chr6	32642758	32642759	rs1694123	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	HLA-DQB1	rs1694123-G	0.157	8E-13	(Zinc fingers and homeoboxes protein 3, ZHX3.10036.201.3)	0.27	[0.19-0.35] unit increase	Affymetrix [10572788] (imputed)	N
834	chr6	32644552	32644553	rs3134986	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	6p21.32	NA	rs3134986-T	0.2899	9E-9		0.002	[0.0014-0.0026] unit decrease	Affymetrix [15275733] (imputed)	N
834	chr6	32646858	32646859	rs139025277	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs139025277-G	0.096	9E-14	(HLA class II histocompatibility antigen, DQ alpha 2 chain, HLA.DQA2.7757.5.3)	0.35	[0.25-0.45] unit decrease	Affymetrix [10572788] (imputed)	N
834	chr6	32647061	32647062	rs28755358	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs28755358-A	0.247	8E-16	(Complement C4, C4A.C4B.4481.34.2)	0.26	[0.2-0.32] unit increase	Affymetrix [10572788] (imputed)	N
834	chr6	32647378	32647379	rs56151658	32890573	Yan Q	2020-09-02	J Allergy Clin Immunol	A genome-wide association study of asthma hospitalizations in adults.	Exacerbations requiring hospitalisation in asthma	1,658 British ancestry cases, 32,509 British ancestry controls	NA	6p21.32	NR	rs56151658-A	0.89	3E-8		1.36	[1.22-1.52]	Affymetrix [87696888] (imputed)	N
834	chr6	32647468	32647469	rs6931740	31719529	Lyons PA	2019-11-12	Nat Commun	Genome-wide association study of eosinophilic granulomatosis with polyangiitis reveals genomic loci stratified by ANCA status.	Eosinophilic granulomatosis with polyangiitis (ANCA negative)	352 European ancestry cases, 6,688 European ancestry controls	94 European and unknown ancestry cases, 121 European and unknown ancestry controls	6p21.32	HLA	rs6931740-?	NR	3E-9		0.55	NR unit increase	Affymetrix [9246221] (imputed)	N
834	chr6	32647700	32647701	rs3129780	27749845	Lesseur C	2016-10-17	Nat Genet	Genome-wide association analyses identify new susceptibility loci for oral cavity and pharyngeal cancer.	Oral cavity cancer	2,717 European ancestry cases, 273 cases, 5,984 European ancestry controls, 601 controls	NA	6p21.32	intergenic	rs3129780-A	0.64	6E-8		1.2373	NR	Illumina [7574753] (imputed)	N
834	chr6	32647865	32647866	rs201414107	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lung cancer	3,791 European ancestry cases, 489,012 European ancestry controls, 4,444 East Asian ancestry cases, 174,282 East Asian ancestry controls	NA	6p21.32		rs201414107-A	NR	8E-10		0.1374	[0.093-0.181] unit increase	Affymetrix, Illumina [25845450] (imputed)	N
834	chr6	32648155	32648156	rs9275052	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.32	NR	rs9275052-G	NR	1E-10		0.028	unit decrease	Affymetrix [at least 7091467] (imputed)	N
834	chr6	32648155	32648156	rs9275052	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.32	NR	rs9275052-G	0.404	5E-9	(EA)	0.027	unit decrease	Affymetrix [at least 7091467] (imputed)	N
834	chr6	32648155	32648156	rs9275052	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.32	NR	rs9275052-G	NR	2E-6		0.021	unit decrease	Affymetrix [at least 7091467] (imputed)	N
834	chr6	32648947	32648948	rs545072519	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	HLA-DQB1	rs545072519-C	NR	2E-9		0.0333434	[0.022-0.044] unit increase	Affymetrix [321114] (imputed)	N
834	chr6	32649663	32649664	rs1694112	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	6p21.32	NR	rs1694112-?	NR	8E-41	(conditional)			Affymetrix [15688218] (imputed)	N
834	chr6	32649675	32649676	rs9275109	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	HLA-DQB1	rs9275109-G	NR	2E-9		0.0176049	[0.012-0.023] unit decrease	Affymetrix [321114] (imputed)	N
834	chr6	32650611	32650612	rs9275134	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Cancer	56,634 White British ancestry cases, 218,196 White British ancestry controls	NA	6p21.32		rs9275134-?	NR	6E-6		0.964671	[0.95-0.98]	NR [688737]	N
834	chr6	32650760	32650761	rs17205731	33143745	Andlauer TFM	2020-11-04	BMC Med	Treatment- and population-specific genetic risk factors for anti-drug antibodies against interferon-beta: a GWAS.	Binding antibody response to interferon beta therapy in multiple sclerosis (antibody levels; IFN?-1b subcutaneous)	up to 2,000 German and Swedish ancestry individuals	up to 757 German and Swedish ancestry individuals	6p21.32		rs17205731-T	0.05	2E-11	(conditional on HLA-DRB1*04:01)	0.62026006	[0.44-0.8] unit increase	Illumina [8550834] (imputed)	N
834	chr6	32651078	32651079	rs17212146	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	6p21.32		rs17212146-A	0.01175	2E-14		0.08258159	[0.061-0.104] unit increase	Affymetrix [93095623] (imputed)	N
834	chr6	32651078	32651079	rs17212146	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6p21.32		rs17212146-A	0.01175	3E-25		0.11182327	[0.091-0.133] unit increase	Affymetrix [93095623] (imputed)	N
834	chr6	32651539	32651540	rs17212223	24204295	Han F	2013-10-31	PLoS Genet	Genome wide analysis of narcolepsy in China implicates novel immune loci and reveals changes in association prior to versus after the 2009 H1N1 influenza pandemic.	Narcolepsy (age of onset)	at least 1,000 Chinese ancestry cases	NA	6p21.32	NR	rs17212223-T	0.191	3E-8		1.95	year decrease	Affymetrix [603382]	N
834	chr6	32652195	32652196	rs9275152	31660654	Bandres-Ciga S	2019-10-29	Mov Disord	The Genetic Architecture of Parkinson Disease in Spain: Characterizing Population-Specific Risk, Differential Haplotype Structures, and Providing Etiologic Insight.	Parkinson's disease	4,639 Spanish ancestry cases, 2,949 Spanish ancestry controls	NA	6p21.32	HLA-DQB1	rs9275152-C	0.08263	2E-8		0.376551	[0.25-0.51] unit decrease	Illumina [9911207] (imputed)	N
834	chr6	32652277	32652278	rs3104361	33204752	Butler-Laporte G	2020-09-24	Open Forum Infect Dis	Genetic Determinants of Antibody-Mediated Immune Responses to Infectious Diseases Agents: A Genome-Wide and HLA Association Study.	Helicobacter pylori OMP antibody levels	2,640 White British ancestry individuals	NA	6p21.32	HLA-DQB1	rs3104361-T	0.418	7E-10		0.18	[0.12-0.24] unit decrease	NR [25472218] (imputed)	N
834	chr6	32652316	32652317	rs7755224	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	6p21.32	NR	rs7755224-?	NR	5E-138	(conditional)			Affymetrix [15688218] (imputed)	N
834	chr6	32652358	32652359	rs3021058	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Automobile speeding propensity	404,291 European ancestry individuals	NA	6p21.32	HLA-DQB1	rs3021058-A	0.5386	4E-8		0.012403218	[0.008-0.0168] unit increase	Affymetrix [11514463] (imputed)	N
834	chr6	32652468	32652469	rs3021176	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hepatic cancer	379 European ancestry cases, 475,259 European ancestry controls, 2,122 East Asian ancestry cases, 159,201 East Asian ancestry controls	NA	6p21.32		rs3021176-A	NR	2E-9		0.2342	[0.16-0.31] unit increase	Affymetrix, Illumina [25843189] (imputed)	N
834	chr6	32652619	32652620	rs9275160	34431594	Atkins JL	2021-08-25	Aging Cell	A genome-wide association study of the frailty index highlights brain pathways in ageing.	Frailty index	175,226 European ancestry individuals	NA	6p21.32	HLA-DQB1, HLA-DQA2	rs9275160-A	0.3397	7E-28		0.0382	[0.031-0.045] unit increase	Affymetrix, Illumina [7666890] (imputed)	N
834	chr6	32652619	32652620	rs9275160	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	6p21.32	NR	rs9275160-A	NR	9E-8		1.044	[1.03-1.06]	Affymetrix, Illumina [29235255] (imputed)	N
834	chr6	32652784	32652785	rs28746950	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs28746950-A	0.172	4E-13	(Ubiquitin carboxyl-terminal hydrolase 25, USP25.9215.117.3)	0.27	[0.19-0.35] unit increase	Affymetrix [10572788] (imputed)	N
834	chr6	32652946	32652947	rs115712830	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28- CD4-CD8- T cell Absolute Count	3,408 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs115712830-C	0.15817	5E-8		0.2914	[0.19-0.4] unit decrease	Illumina [18340221] (imputed)	N
834	chr6	32653971	32653972	rs9275171	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	2,495 East Asian ancestry cases, 4,283 East Asian ancestry controls	NA	6p21.32		rs9275171-G	NR	5E-29		0.446594	[0.37-0.52] unit increase	NR [5275424] (imputed)	N
834	chr6	32654173	32654174	rs9275177	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	IgA nephropathy	1,180 East Asian ancestry cases, 899 East Asian ancestry controls	NA			rs9275177-T	NR	2E-6		0.362916	[0.21-0.51] unit increase	Illumina [NR] (imputed)	N
834	chr6	32654713	32654714	rs9275184	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	6p21.32	NR	rs9275184-C	0.1106	6E-24		0.0981	[0.079-0.117] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
834	chr6	32654821	32654822	rs2856687	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	6p21.32	NR	rs2856687-C	0.588689	2E-12		0.0486468	[0.035-0.062] unit decrease	Affymetrix [17914406] (imputed)	N
834	chr6	32654976	32654977	rs28747027	32573827	Huang YH	2020-06-23	Aliment Pharmacol Ther	Large-scale genome-wide association study identifies HLA class II variants associated with chronic HBV infection: a study from Taiwan Biobank.	Chronic hepatitis B infection	1,810 East Asian cases, 9,002 East Asian seropositive controls	648 East Asian cases, 3,190 East Asian seropositive controls	6p21.32	NR	rs28747027-G	0.4639	7E-21		1.41	[1.32-1.52]	Affymetrix [583383]	N
834	chr6	32655547	32655548	rs13194877	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs13194877-A	0.2	6E-9		4.48	[3.41-5.89]	Illumina [NR] (imputed)	N
834	chr6	32655729	32655730	rs3129783	33143745	Andlauer TFM	2020-11-04	BMC Med	Treatment- and population-specific genetic risk factors for anti-drug antibodies against interferon-beta: a GWAS.	Binding antibody response to interferon beta therapy in multiple sclerosis (antibody levels; IFN?-1a subcutaneous and intramuscular)	up to 2,000 German and Swedish ancestry individuals	up to 757 German and Swedish ancestry individuals	6p21.32		rs3129783-G	0.44	4E-19		0.3	[-0.24--0.36] unit decrease	Illumina [8550834] (imputed)	N
834	chr6	32655915	32655916	rs189311301	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs189311301-C	0.991	3E-10		2.233	[1.98-2.48]	Illumina [11270530] (imputed)	N
834	chr6	32656065	32656065	rs201452941	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.32	HLA-DQB1, HLA-DQA2	rs201452941-?	0.611	7E-12	(women)	0.0399317	[0.029-0.051] unit decrease	Illumina [13520550] (imputed)	N
834	chr6	32656067	32656067	rs111626885	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.32	Intergenic	rs111626885-?	NR	7E-12	(women)	0.0399302	[0.029-0.051] unit decrease	Illumina [13520550] (imputed)	N
834	chr6	32657435	32657436	rs3129716	26316170	Demirci FY	2015-08-28	Arthritis Rheumatol	Identification of a New Susceptibility Locus for Systemic Lupus Erythematosus on Chromosome 12 in Individuals of European Ancestry.	Systemic lupus erythematosus	661 European ancestry cases, 487 European ancestry controls	4,467 European ancestry cases, 9,114 European ancestry controls	6p21.32	HLA-DQB1	rs3129716-?	NR	4E-9				Affymetrix [up to 700598]	N
834	chr6	32657542	32657543	rs4642516	30012571	Jia X	2018-07-16	J Am Soc Nephrol	Strong Association of the HLA-DR/DQ Locus with Childhood Steroid-Sensitive Nephrotic Syndrome in the Japanese Population.	Childhood steroid-sensitive nephrotic syndrome	224 Japanese ancestry cases, 412 Japanese ancestry controls	216 Japanese ancestry cases, 719 Japanese ancestry controls	6p21.32	HLA-DR, HLA-DQ	rs4642516-T	0.73	7E-13		3.030303	[2.44-3.85]	Affymetrix [4105543] (imputed)	N
834	chr6	32657577	32657578	rs7774434	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	8,021 European ancestry cases, 16,489 European ancestry controls, 2,495 East Asian ancestry cases, 4,283 East Asian ancestry controls	NA	6p21.32		rs7774434-C	NR	3E-116		0.462101	[0.42-0.5] unit increase	NR [2787054] (imputed)	N
834	chr6	32657577	32657578	rs7774434	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	8,021 European ancestry cases, 16,489 European ancestry controls	NA	6p21.32		rs7774434-C	NR	4E-104		0.470454	[0.43-0.51] unit increase	NR [5054572] (imputed)	N
834	chr6	32657577	32657578	rs7774434	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	MTCO3P1	rs7774434-C	NR	6E-9		0.0168538	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
834	chr6	32657577	32657578	rs7774434	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	MTCO3P1	rs7774434-C	NR	2E-8		0.0162768	[0.011-0.022] unit increase	Affymetrix [319769] (imputed)	N
834	chr6	32657577	32657578	rs7774434	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	MTCO3P1	rs7774434-C	NR	2E-10		0.0201596	[0.014-0.026] unit decrease	Affymetrix [323123] (imputed)	N
834	chr6	32657577	32657578	rs7774434	26394269	Cordell HJ	2015-09-22	Nat Commun	International genome-wide meta-analysis identifies new primary biliary cirrhosis risk loci and targetable pathogenic pathways.	Primary biliary cholangitis	2,764 European ancestry cases, 10,475 European ancestry controls	3,716 European ancestry cases,  4,261 European ancestry controls	6p21.32	MHC	rs7774434-C	0.47	2E-56		1.68	NR	Illumina [1143634] (imputed)	N
834	chr6	32657577	32657578	rs7774434	22961000	Liu JZ	2012-10-01	Nat Genet	Dense fine-mapping study identifies new susceptibility loci for primary biliary cirrhosis.	Primary biliary cirrhosis	2,861 British and Irish ancestry cases, 8,514 British and Irish ancestry controls	NA	6p21.32	HLA	rs7774434-C	0.38	1E-48		1.57		Illumina [237619] (imputed)	N
834	chr6	32657577	32657578	rs7774434	21399635	Mells GF	2011-03-13	Nat Genet	Genome-wide association study identifies 12 new susceptibility loci for primary biliary cirrhosis.	Primary biliary cholangitis	1,840 European ancestry cases, 5,163 European ancestry controls and (Liu et al)	620 European ancestry cases, 2,514 European ancestry controls	6p21.32	MHC	rs7774434-C	0.38	4E-34		1.6	[1.48-1.73]	Illumina [507467]	N
834	chr6	32657577	32657578	rs7774434	20639880	Liu X	2010-07-18	Nat Genet	Genome-wide meta-analyses identify three loci associated with primary biliary cirrhosis.	Primary biliary cholangitis	453 European ancestry cases, 945 European ancestry controls,	481 European ancestry cases, 3,706 European ancestry controls	6p21.32	HLA-DQB1	rs7774434-C	0.371	3E-26		1.75	[NR]	Illumina [276459]	N
834	chr6	32657816	32657817	rs9275210	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	MTCO3P1	rs9275210-T	NR	9E-9		0.0164099	[0.011-0.022] unit increase	Affymetrix [321114] (imputed)	N
834	chr6	32657915	32657916	rs7775055	23603761	Hinks A	2013-04-21	Nat Genet	Dense genotyping of immune-related disease regions identifies 14 new susceptibility loci for juvenile idiopathic arthritis.	Juvenile idiopathic arthritis (oligoarticular or rheumatoid factor-negative polyarticular)	2,816 European ancestry cases, 13,056 European ancestry controls	NA	6p21.32	HLA-DQA2, HLA-DQB1	rs7775055-G	0.02	3E-174	(dominant model)	6.01	[5.30-6.81]	Illumina [123003]	N
834	chr6	32657915	32657916	rs7775055	22936693	Juran BD	2012-08-29	Hum Mol Genet	Immunochip analyses identify a novel risk locus for primary biliary cirrhosis at 13q14, multiple independent associations at four established risk loci and epistasis between 1p31 and 7q32 risk variants.	Primary biliary cirrhosis	2,216 European ancestry cases, 5,594 Europen ancestry controls	NA	6p21.32	NR	rs7775055-C		1E-33		3.71	[3.00-4.59]	Illumina [109812]	N
834	chr6	32658078	32658079	rs7775228	33106546	Johnson TA	2020-10-26	J Hum Genet	Association of an IGHV3-66 gene variant with Kawasaki disease.	Kawasaki disease	1,276 East Asian ancestry cases, 5,086 East Asian ancestry controls	2,152 East Asian ancestry cases, 2,751 East Asian ancestry controls	6p21.32	HLA-DQB1	rs7775228-C	NR	7E-13		1.26	[1.19-1.35]	Affymetrix, Illumina [6265045] (imputed)	N
834	chr6	32658078	32658079	rs7775228	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.32	NR	rs7775228-?	NR	3E-6	(EA, C-C motif chemokine 19)			Affymetrix [509946]	N
834	chr6	32658078	32658079	rs7775228	25147954	Enroth S	2014-08-22	Nat Commun	Strong effects of genetic and lifestyle factors on biomarker variation and use of personalized cutoffs.	CCL19 levels	up to 653 individuals	up to 317 individuals	6p21.32	HLA-DQB1	rs7775228-C	0.16731	3E-13		0.51	[0.37-0.65] unit increase	Illumina [4840842] (imputed)	N
834	chr6	32658078	32658079	rs7775228	22036096	Ramasamy A	2011-11-01	J Allergy Clin Immunol	A genome-wide meta-analysis of genetic variants associated with allergic rhinitis and grass sensitization and their interaction with birth order.	IgE grass sensitization	2,315 European ancestry cases, 10,032 European ancestry controls	NA	6p21.32	HLA region	rs7775228-C	0.13	2E-9		1.33	[1.21-1.45]	Affymetrix, Illumina [2217510] (imputed)	N
834	chr6	32658078	32658079	rs7775228	21804548	Hirota T	2011-07-31	Nat Genet	Genome-wide association study identifies three new susceptibility loci for adult asthma in the Japanese population.	Asthma	1,532 Japanese ancestry cases, 3,304 Japanese ancestry controls	5,639 Japanese ancestry cases, 24,608 Japanese ancestry controls	6p21.32	HLA-DQB1	rs7775228-A	0.63	5E-15		1.17	[1.12-1.21]	Illumina [458847]	N
834	chr6	32658309	32658310	rs9469220	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	MTCO3P1	rs9469220-A	NR	5E-16		0.0228026	[0.017-0.028] unit increase	Affymetrix [319769] (imputed)	N
834	chr6	32658309	32658310	rs9469220	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	MTCO3P1	rs9469220-A	NR	9E-16		0.0226045	[0.017-0.028] unit increase	Affymetrix [319769] (imputed)	N
834	chr6	32658309	32658310	rs9469220	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	MTCO3P1	rs9469220-A	NR	5E-18		0.0246439	[0.019-0.03] unit increase	Affymetrix [321169] (imputed)	N
834	chr6	32658309	32658310	rs9469220	30230522	Zhang S	2018-09-19	Br J Dermatol	Subtype-Specific Inherited Predisposition to Pemphigus in Chinese Population.	Pemphigus vulgaris	255 Chinese ancestry cases, 501 Chinese ancestry controls	110 Chinese ancestry cases, 604 Chinese ancestry controls	6p21.32	NR	rs9469220-G	0.33	4E-19		3.36	NR	Affymetrix [416397]	N
834	chr6	32658309	32658310	rs9469220	30230522	Zhang S	2018-09-19	Br J Dermatol	Subtype-Specific Inherited Predisposition to Pemphigus in Chinese Population.	Pemphigus	350 Chinese ancestry cases, 501 Chinese ancestry controls	146 Chinese ancestry cases, 604 Chinese ancestry controls	6p21.32	NR	rs9469220-G	0.33	7E-22		3.2	NR	Affymetrix [416397]	N
834	chr6	32658309	32658310	rs9469220	23146381	Levin AM	2012-11-10	J Allergy Clin Immunol	A meta-analysis of genome-wide association studies for serum total IgE in diverse study populations.	IgE levels	2,469 African American individuals, 259 Latino individuals, 1,564 European ancestry individuals	2,961 African American individuals, 1,477 Latino individuals, 649 European ancestry individuals, 680 Hutterite individuals	6p21.32	HLA-DQB1	rs9469220-G	NR	2E-7		0.09	[0.05-0.12] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
834	chr6	32658309	32658310	rs9469220	17554300	Wellcome Trust Case Control Consortium	2007-06-07	Nature	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Crohn's disease	1,748 European ancestry cases, 2,938 European ancestry controls	(see Parkes 2007)	6p21.32	NR	rs9469220-A	0.48	2E-6		1.14	[0.98-1.32]	Affymetrix [469557]	N
834	chr6	32658693	32658694	rs34723256	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs34723256-A	0.059	4E-68	(conditional)	2.282	[2.19-2.37]	Illumina [11270530] (imputed)	N
834	chr6	32658714	32658715	rs2858330	31985003	Boocock J	2020-01-27	Hum Mol Genet	Genomic dissection of 43 serum urate-associated loci provides multiple insights into molecular mechanisms of urate control.	Urate levels	110,238 European ancestry individuals, 21,471 East Asian individuals	NA	6p21.32	HLA-DQB1	rs2858330-T		4E-8		0.027	[0.017-0.037] mg/dl increase	NR [NR] (imputed)	N
834	chr6	32658932	32658933	rs9275218	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	MTCO3P1	rs9275218-G	NR	1E-11		0.0205042	[0.015-0.026] unit increase	Affymetrix [321169] (imputed)	N
834	chr6	32659442	32659443	rs140068907	26891255	Jung ES	2016-02-18	Inflamm Bowel Dis	HLA-C*01 is a Risk Factor for Crohn's Disease.	Crohn's disease	275 Korean ancestry cases, 2,369 Korean ancestry controls	242 Korean ancestry cases, 1,066 Korean ancestry controls	6p21.32	HLA-DQB1, HLA-DQA2	rs140068907-C	0.08	1E-11		1.98	[1.62-2.41]	Affymetrix [3387207] (imputed)	N
834	chr6	32659515	32659516	rs9275222	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	MTCO3P1	rs9275222-T	NR	7E-11		0.0204278	[0.014-0.027] unit increase	Affymetrix [323858] (imputed)	N
834	chr6	32659515	32659516	rs9275222	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	MTCO3P1	rs9275222-T	NR	1E-9		0.0190432	[0.013-0.025] unit increase	Affymetrix [127266] (imputed)	N
834	chr6	32659644	32659645	rs2856674	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	MTCO3P1	rs2856674-G	NR	7E-14		0.0297899	[0.022-0.038] unit decrease	Affymetrix [321169] (imputed)	N
834	chr6	32659644	32659645	rs2856674	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling nervous	373,121 European ancestry individuals	NA	6p21.32	BRD2	rs2856674-A	0.144331	2E-10		6.41	z score increase	NR [10847151] (imputed)	N
834	chr6	32659644	32659645	rs2856674	23603763	Liu JZ	2013-06-01	Nat Genet	Dense genotyping of immune-related disease regions identifies nine new risk loci for primary sclerosing cholangitis.	Primary sclerosing cholangitis	3,789 European ancestry cases, 25,079 European ancestry controls	NA	6p21.32	HLA-DQA	rs2856674-?	NR	1E-6	(conditioned on rs4143332 + HLA-DQA*01:03 + rs532098 +rs1794282 + rs9263964)			Illumina [140322] (imputed)	N
834	chr6	32659837	32659838	rs3129718	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Hepatitis B	1,425 European ancestry cases, 218,180 European ancestry controls	NA	6p21.32	NR	rs3129718-?	NR	6E-6		0.3099	[0.17-0.45] unit decrease	Illumina [at least 560000] (imputed)	N
834	chr6	32659877	32659878	rs9275224	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	MTCO3P1	rs9275224-G	NR	1E-13		0.0208122	[0.015-0.026] unit increase	Affymetrix [319769] (imputed)	N
834	chr6	32659877	32659878	rs9275224	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	MTCO3P1	rs9275224-G	NR	1E-12		0.0199507	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
834	chr6	32659877	32659878	rs9275224	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	MTCO3P1	rs9275224-G	NR	5E-16		0.023055	[0.017-0.029] unit increase	Affymetrix [321169] (imputed)	N
834	chr6	32659877	32659878	rs9275224	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	6p21.32	HLA-DQB1, HLA-DQA1, HLA-DRB1	rs9275224-G	0.59	8E-14	(East Asian)	1.38		Illumina [> 1000000] (imputed)	N
834	chr6	32659877	32659878	rs9275224	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	6p21.32	HLA-DQB1, HLA-DQA1, HLA-DRB1	rs9275224-G	0.51	6E-30		1.36	[NR]	Illumina [> 1000000] (imputed)	N
834	chr6	32659877	32659878	rs9275224	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	6p21.32	HLA-DQB1, HLA-DQA1, HLA-DRB1	rs9275224-G	0.51	6E-18	(EA)	1.38	[NR]	Illumina [> 1000000] (imputed)	N
834	chr6	32659896	32659897	rs35472814	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs35472814-C	0.2	1E-8		4.23	[3.24-5.52]	Illumina [NR] (imputed)	N
834	chr6	32660581	32660582	rs2647006	30593799	Vergara C	2018-12-26	Gastroenterology	Multi-Ancestry Genome-Wide Association Study of Spontaneous Clearance of Hepatitis C Virus.	Hepatitis C (spontaneous viral clearance)	701 European ancestry cases, 1,035 European ancestry controls, 445 African American cases, 1,756 African American controls, 173 Hispanic ancestry cases, 313 Hispanic ancestry controls	NA	6p21.32	HLA-DQB1, HLA-DQA2	rs2647006-C	0.62	1E-21		1.79	NR (AA)	Illumina [15704341] (imputed)	N
834	chr6	32660716	32660717	rs9275239	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	MTCO3P1	rs9275239-A	NR	2E-20		0.0286392	[0.023-0.035] unit decrease	Affymetrix [323123] (imputed)	N
834	chr6	32660740	32660741	rs9275241	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs9275241-?	NR	2E-13				Affymetrix [~ 8270000] (imputed)	N
834	chr6	32660942	32660943	rs9275245	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (mother's age at death or mother's attained age)	up to 699,000 individuals	NA	6p21.32	NR	rs9275245-A		3E-6				Illumina [458525]	N
834	chr6	32661292	32661293	rs2858320	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	MTCO3P1	rs2858320-A	NR	9E-24		0.0285816	[0.023-0.034] unit decrease	Affymetrix [319769] (imputed)	N
834	chr6	32661292	32661293	rs2858320	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	MTCO3P1	rs2858320-A	NR	8E-23		0.0279496	[0.022-0.034] unit decrease	Affymetrix [319769] (imputed)	N
834	chr6	32661292	32661293	rs2858320	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	MTCO3P1	rs2858320-A	NR	9E-27		0.0308142	[0.025-0.036] unit decrease	Affymetrix [321169] (imputed)	N
834	chr6	32661292	32661293	rs2858320	33119750	Vergara C	2020-10-29	J Infect Dis	A multi-ancestry sex stratified genome-wide association study of spontaneous clearance of hepatitis C virus.	Hepatitis C (spontaneous viral clearance)	239 African ancestry male cases, 1,184 African ancestry male controls, 206 African ancestry female cases, 572 African ancestry female controls, 489 European ancestry male cases, 703 European ancestry male controls, 212 European ancestry female cases, 332 European ancestry female controls, 91 Hispanic male cases, 197 Hispanic male controls, 82 Hispanic female cases, 116 Hispanic female controls	NA	6p21.32	NR	rs2858320-G	0.58	2E-12	(female)	1.96	[NR]	Illumina [5730693] (imputed)	N
834	chr6	32661574	32661575	rs9275260	28698626	Lopez-Mejias R	2017-07-11	Sci Rep	A genome-wide association study suggests the HLA Class II region as the major susceptibility locus for IgA vasculitis.	Immunoglobulin A vasculitis	285 European ancestry cases, 1,006 European ancestry controls	NA	6p21.32	HLA-DQA1, HLA-DQB1	rs9275260-?		3E-9		1.7857143	[1.47-2.17]	Illumina [1909910] (imputed)	N
834	chr6	32661994	32661995	rs79870097	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	6p21.32	NR	rs79870097-?	NR	6E-30	(conditional)			Affymetrix [15688218] (imputed)	N
834	chr6	32662268	32662269	rs558121619	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Polyunsaturated fatty acid levels	115,006 European ancestry individuals	NA	6p21.32		rs558121619-A	0.542695	8E-10		0.0254897	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
834	chr6	32662268	32662269	rs558121619	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-6 fatty acid levels	115,006 European ancestry individuals	NA	6p21.32		rs558121619-A	0.542695	3E-10		0.0262771	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
834	chr6	32662268	32662269	rs558121619	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Linoleic acid levels	115,006 European ancestry individuals	NA	6p21.32		rs558121619-A	0.542695	2E-8		0.0235541	[0.015-0.032] unit decrease	NR [11722792] (imputed)	N
834	chr6	32662279	32662280	rs2858317	33119750	Vergara C	2020-10-29	J Infect Dis	A multi-ancestry sex stratified genome-wide association study of spontaneous clearance of hepatitis C virus.	Hepatitis C (spontaneous viral clearance)	239 African ancestry male cases, 1,184 African ancestry male controls, 206 African ancestry female cases, 572 African ancestry female controls, 489 European ancestry male cases, 703 European ancestry male controls, 212 European ancestry female cases, 332 European ancestry female controls, 91 Hispanic male cases, 197 Hispanic male controls, 82 Hispanic female cases, 116 Hispanic female controls	NA	6p21.32	NR	rs2858317-A	0.63	1E-11	(male)	1.73	[NR]	Illumina [5730693] (imputed)	N
834	chr6	32662279	32662280	rs2858317	31263063	Dufek S	2019-07-01	J Am Soc Nephrol	Genetic Identification of Two Novel Loci Associated with Steroid-Sensitive Nephrotic Syndrome.	Childhood steroid-sensitive nephrotic syndrome	422 European ancestry cases, 5,642 European ancestry controls	NA	6p21.32	HLA-DQB1	rs2858317-?	NR	4E-31	(conditioned on rs9273542)			Illumina [5216266] (imputed)	N
834	chr6	32662343	32662344	rs9275263	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic hepatitis C infection	273 European ancestry cases, 351,740 European ancestry controls, 7,110 East Asian ancestry cases, 169,588 East Asian ancestry controls	NA	6p21.32		rs9275263-G	NR	2E-12		0.1228	[0.088-0.157] unit decrease	Affymetrix, Illumina [20457788] (imputed)	N
834	chr6	32662424	32662425	rs9275267	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic hepatitis C infection	7,110 East Asian ancestry cases, 169,588 East Asian ancestry controls	NA	6p21.32		rs9275267-G	0.623579949	3E-12		0.1242382	[0.089-0.159] unit decrease	Illumina [13429570] (imputed)	N
834	chr6	32662532	32662533	rs9275271	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR++ monocyte Absolute Count	3,579 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9275271-C	0.62317	2E-14		0.2356	[0.18-0.3] unit increase	Illumina [18377365] (imputed)	N
834	chr6	32662545	32662546	rs9275272	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Prostate cancer	10,792 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs9275272-C	NR	2E-7		1.0948106	NR	Affymetrix [7846216] (imputed)	N
834	chr6	32662919	32662920	rs9275281	28373541	Yang J	2017-04-03	Proc Natl Acad Sci U S A	Genetic signatures of high-altitude adaptation in Tibetans.	High altitude adaptation	3,008 Tibetan (founder/genetic isolate) individuals and 7,287 East Asian individuals	NA	6p21.32	HLA-DQB1	rs9275281-G	0.365	1E-10				Illumina [7300000] (imputed)	N
834	chr6	32662920	32662921	rs114169440	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs114169440-A	0.2	2E-8		4.08	[3.13-5.31]	Illumina [NR] (imputed)	N
834	chr6	32662973	32662974	rs9275282	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs9275282-?	NR	1E-14				Affymetrix [~ 8270000] (imputed)	N
834	chr6	32663157	32663158	rs113523948	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs113523948-C	0.063	3E-21	(conditional)	0.578	[0.46-0.69]	Illumina [11270530] (imputed)	N
834	chr6	32663258	32663259	rs112927854	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Low density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	6p21.32	HLA-DQB1, HLA-DQA2	rs112927854-?		4E-9		0.0728	[0.049-0.097] unit decrease	Illumina [31500000] (imputed)	N
834	chr6	32663288	32663289	rs9275292	27286809	Ligthart S	2016-06-10	BMC Genomics	Bivariate genome-wide association study identifies novel pleiotropic loci for lipids and inflammation.	C-reactive protein levels or LDL-cholesterol levels (pleiotropy)	65,000 individuals (C-reactive protein), 95,454 individuals (LDL-cholesterol)	NA	6p21.32	HLA-DQB1	rs9275292-A	NR	3E-8				NR [2501749] (imputed)	N
834	chr6	32663396	32663397	rs13205804	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	6p21.32	intergenic	rs13205804-A	0.8815	3E-21		0.0391	[0.031-0.047] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
834	chr6	32663630	32663631	rs3129720	23472185	Mero IL	2013-03-05	PLoS One	Oligoclonal band status in Scandinavian multiple sclerosis patients is associated with specific genetic risk alleles.	Multiple sclerosis (OCB status)	1,367 European ancestry OCB positive cases, 161 European ancestry OCB negative cases, 428 European ancestry controls	NA	6p21.32	HLA-DQB1	rs3129720-?	NR	5E-15	(OCB positive vs. controls)	1.91	[1.62-2.24]	Illumina [495970]	N
834	chr6	32663630	32663631	rs3129720	22493691	Eriksson N	2012-04-06	PLoS One	Novel associations for hypothyroidism include known autoimmune risk loci.	Hypothyroidism	3,736 European ancestry cases, 35,546 European ancestry controls	NA	6p21.32	HLA-DQA2, HLA-DQB1, HLA-DRB9, HLA-DRB5, HLA-DRB1, HLA-DQA1	rs3129720-C	0.764	5E-7		1.16	(1.10-1.23)	Illumina [870065]	N
834	chr6	32663763	32663764	rs17427445	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs17427445-A	0.2	1E-8		4.23	[3.24-5.52]	Illumina [NR] (imputed)	N
834	chr6	32663850	32663851	rs6457617	31050781	Zhao SX	2019-05-03	JAMA Netw Open	Assessment of Molecular Subtypes in Thyrotoxic Periodic Paralysis and Graves Disease Among Chinese Han Adults: A Population-Based Genome-Wide Association Study.	Thyrotoxic hypokalemic periodic paralysis and Graves disease	171 Han Chinese ancestry cases, 2,160 Han Chinese ancestry controls	362 Han Chinese ancestry cases, 1,089 Han Chinese ancestry controls	6p21.32	HLA-DQB1, HLA-DQA2	rs6457617-?	0.47	2E-17		1.74	[1.53-1.97]	Illumina [2752055] (imputed)	N
834	chr6	32663850	32663851	rs6457617	25616667	Goris A	2015-01-22	Brain	Genetic variants are major determinants of CSF antibody levels in multiple sclerosis.	Immunoglobulin G index levels in multiple sclerosis	773 European ancestry Individuals, 165 Individuals	2,072 Individuals	6p21.32	HLA-DQA1	rs6457617-A	NR	7E-17		0.127	[NR] unit decrease	NR [485236]	N
834	chr6	32663850	32663851	rs6457617	21841780	Chu X	2011-08-14	Nat Genet	A genome-wide association study identifies two new risk loci for Graves' disease.	Graves' disease	1,468 Chinese ancestry cases, 1,490 Chinese ancestry controls	3,994 Chinese ancestry cases, 3,510 Chinese ancestry controls	6p21.32	HLA, DRB1, DQA1, DQB1	rs6457617-T	0.45	7E-33		1.4	[1.32-1.48]	Illumina [486049]	N
834	chr6	32663850	32663851	rs6457617	21750679	Allanore Y	2011-07-07	PLoS Genet	Genome-wide scan identifies TNIP1, PSORS1C1, and RHOB as novel risk loci for systemic sclerosis.	Systemic sclerosis	564 European ancestry cases, 1,776 European ancestry controls	1,682 European ancestry cases, 3,926 European ancestry controls	6p21.32	HLA, DQB1	rs6457617-T	0.50	2E-37		1.61	[1.49-1.72]	Illumina [489814]	N
834	chr6	32663850	32663851	rs6457617	20383147	Radstake TR	2010-04-11	Nat Genet	Genome-wide association study of systemic sclerosis identifies CD247 as a new susceptibility locus.	Systemic sclerosis	2,296 European ancestry cases, 5,171 European ancestry controls	2,753 European ancestry cases, 4,569 European ancestry controls	6p21.32	HLA-DQB1	rs6457617-?	0.53	4E-17		1.37	[1.28-1.47]	Illumina [279621]	N
834	chr6	32663850	32663851	rs6457617	18668548	Julia A	2008-08-01	Arthritis Rheum	Genome-wide association study of rheumatoid arthritis in the Spanish population: KLF12 as a risk locus for rheumatoid arthritis susceptibility.	Rheumatoid arthritis	400 European ancestry cases, 400 European ancestry controls	410 European ancestry cases, 394 European ancestry controls	6p21.32	HLA-DQA2, HLA-DQA1	rs6457617-?	NR	1E-9				Illumina [299918]	N
834	chr6	32663850	32663851	rs6457617	17554300	Wellcome Trust Case Control Consortium	2007-06-07	Nature	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Rheumatoid arthritis	1,860 European ancestry cases, 2,938 European ancestry controls	NA	6p21.32	MHC	rs6457617-T	0.49	5E-75		2.36	[1.97-2.84]	Affymetrix [469557]	N
834	chr6	32663935	32663936	rs34677551	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs34677551-C	0.2	1E-8		4.23	[3.24-5.52]	Illumina [NR] (imputed)	N
834	chr6	32663953	32663954	rs34392107	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	6p21.32	HLA-DQB1	rs34392107-G	0.883508	6E-45		0.0459707	[0.04-0.052] unit decrease	Affymetrix [NR] (imputed)	N
834	chr6	32663998	32663999	rs6457620	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	6p21.32	HLA locus	rs6457620-C	0.51	2E-16		0.029	[NR] unit decrease	Affymetrix, Illumina [2834208] (imputed)	N
834	chr6	32663998	32663999	rs6457620	18794853	Raychaudhuri S	2008-09-14	Nat Genet	Common variants at CD40 and other loci confer risk of rheumatoid arthritis.	Rheumatoid arthritis	3,393 European ancestry cases, 12,460 European ancestry controls	3,929 European ancestry cases, 5,807 European ancestry controls	6p21.32	HLA-DRB1	rs6457620-?	0.50	4E-186		2.55	[2.40-2.71]	Affymetrix, Illumina [at least 315971] (imputed)	N
834	chr6	32664037	32664038	rs35900855	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs35900855-G	0.2	1E-8		4.23	[3.24-5.52]	Illumina [NR] (imputed)	N
834	chr6	32664331	32664332	rs7745040	29534301	Nishida N	2018-03-13	Hepatology	Key HLA-DRB1-DQB1 haplotypes and role of the BTNL2 gene for response to a hepatitis B vaccine.	Response to hepatitis B vaccine	107 Japanese ancestry low responder individuals, 351 Japanese ancestry intermediate responder individuals, 735 Japanese ancestry high responder individuals	NA	6p21.32	HLA-DQA2	rs7745040-?		2E-10		0.162	unit decrease	Affymetrix [427664]	N
834	chr6	32664457	32664458	rs2647012	33649182	Penova M	2021-03-01	Proc Natl Acad Sci U S A	Genome wide association study of HTLV-1-associated myelopathy/tropical spastic paraparesis in the Japanese population.	HTLV-1 associated myelopathy	731 Japanese ancestry cases, 846 Japanese ancestry controls	NA	6p21.32		rs2647012-T	0.17	5E-7		0.56	[0.45-0.7]	Illumina [126394]	N
834	chr6	32664457	32664458	rs2647012	24925725	Chung SA	2014-06-12	J Am Soc Nephrol	Lupus nephritis susceptibility loci in women with systemic lupus erythematosus.	Lupus nephritis in systemic lupus erythematosus	588 European ancestry cases, 1,412 European ancestry controls	NA	6p21.32	intergenic	rs2647012-?	NR	3E-7	(Additive)	1.52	[1.3-1.75]	Affymetrix, Illumina [1621689] (imputed)	N
834	chr6	32664457	32664458	rs2647012	21533074	Smedby KE	2011-04-21	PLoS Genet	GWAS of follicular lymphoma reveals allelic heterogeneity at 6p21.32 and suggests shared genetic susceptibility with diffuse large B-cell lymphoma.	Follicular lymphoma	379 European ancestry cases, 791 European ancestry controls	1,049 European ancestry cases, 3,952 European ancestry controls	6p21.32	HLA-DQB1	rs2647012-G	0.56	2E-21		1.56	[1.43-1.72]	Illumina [298168]	N
834	chr6	32664457	32664458	rs2647012	21408207	Chung SA	2011-03-03	PLoS Genet	Differential genetic associations for systemic lupus erythematosus based on anti-dsDNA autoantibody production.	Systemic lupus erythematosus	811 anti-dsDNA positive European ancestry cases, 906 anti-dsDNA negative European ancestry cases, 4,813 European ancestry controls	NA	6p21.32	HLA-DQA2, HLA-DQA1	rs2647012-A	0.44	8E-6	(case-only)	1.38	[1.20-1.59]	Illumina [421318] (imputed)	N
834	chr6	32664627	32664628	rs115255544	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs115255544-G	0.2	1E-8		4.23	[3.24-5.52]	Illumina [NR] (imputed)	N
834	chr6	32664790	32664791	rs116303320	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Total cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	6p21.32	HLA-DQB1, HLA-DQA2	rs116303320-?		5E-13		0.0603	[0.044-0.077] unit decrease	Illumina [31500000] (imputed)	N
834	chr6	32664879	32664880	rs2647003	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.32	NR	rs2647003-?	NR	3E-13				Affymetrix [~ 8270000] (imputed)	N
834	chr6	32664959	32664960	rs9357152	21896673	Chen D	2011-09-10	Hum Mol Genet	Genome-wide association study of HPV seropositivity.	HPV seropositivity	1,286 European ancestry lung cancer cases, 679 European ancestry head and neck cancer cases, 811 European ancestry kidney cancer cases, 2,035 European ancestry controls	1,307 Hispanic head and neck cancer cases, 1,037 Hispanic controls		HLA-DQB1	rs9357152-G	0.33	1E-14				Illumina [316015]	N
834	chr6	32665114	32665115	rs17206126	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs17206126-T	0.972723	3E-12		0.087804	[0.063-0.112] unit decrease	NR [11722792] (imputed)	N
834	chr6	32665124	32665125	rs17212462	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs17212462-T	0.2	1E-8		4.23	[3.24-5.52]	Illumina [NR] (imputed)	N
834	chr6	32665249	32665250	rs17212483	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs17212483-T	0.2	9E-9		4.27	[3.27-5.58]	Illumina [NR] (imputed)	N
834	chr6	32665419	32665420	rs10484561	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs10484561-G	0.2	2E-8		4.22	[3.22-5.52]	Illumina [NR] (imputed)	N
834	chr6	32665419	32665420	rs10484561	20639881	Conde L	2010-07-18	Nat Genet	Genome-wide association study of follicular lymphoma identifies a risk locus at 6p21.32.	Follicular lymphoma	681 European ancestry cases, 750 European ancestry controls	up to 3,164 European ancestry cases, 6,208 European ancestry controls	6p21.32	HLA-DQB1	rs10484561-G	0.11	1E-29	(FL)	1.95	[1.72-2.22]	Illumina [312768]	N
834	chr6	32665686	32665687	rs17212553	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs17212553-T	0.2	1E-8		4.23	[3.24-5.52]	Illumina [NR] (imputed)	N
834	chr6	32666294	32666295	rs9275319	23242368	Jiang DK	2012-12-16	Nat Genet	Genetic variants in STAT4 and HLA-DQ genes confer risk of hepatitis B virus-related hepatocellular carcinoma.	Hepatocellular carcinoma in hepatitis B infection	1,161 Chinese ancestry cases, 1,353 Chinese ancestry controls	4,319 Chinese ancestry cases, 4,966 Chinese ancestry controls	6p21.32	HLA-DQ	rs9275319-A	0.88	3E-17		1.49	[1.36-1.63]	Illumina [1672517] (imputed)	N
834	chr6	32666525	32666526	rs1794282	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.32	BTNL2, XXbac-BPG246D15.9, XXbac-BPG154L12.5, XXbac-BPG154L12.4, C6orf10, HNRNPA1P2, RNU6-603P, HLA-DRA, HLA-DRB9, HLA-DOB	rs1794282-T	0.08080808	3E-19	(EA, MHC class I polypeptide-related sequence B)	0.7066	[0.56-0.86] unit decrease	Affymetrix [509946]	N
834	chr6	32666659	32666660	rs9275326	28892059	Chang D	2017-09-11	Nat Genet	A meta-analysis of genome-wide association studies identifies 17 new Parkinson's disease risk loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	5,851 European ancestry cases, 5,866 European ancestry controls	6p21.32	HLA-DRB6, HLA-DQA1	rs9275326-C	0.895	1E-13		1.1764705	[1.12-1.22]	Illumina [11933700] (imputed)	N
834	chr6	32666659	32666660	rs9275326	25064009	Nalls MA	2014-07-27	Nat Genet	Large-scale meta-analysis of genome-wide association data identifies six new risk loci for Parkinson's disease.	Parkinson's disease	13,708 European ancestry cases, 95,282 European ancestry controls	5,353 European ancestry cases, 5,551 European ancestry controls	6p21.32	HLA-DQB	rs9275326-C	0.906	1E-12		1.21	[1.16-1.26]	Illumina [7893274] (imputed)	N
834	chr6	32667066	32667067	rs17427564	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs17427564-C	0.2	1E-8		4.23	[3.24-5.52]	Illumina [NR] (imputed)	N
834	chr6	32667106	32667107	rs9275334	26272072	Jiang X	2015-08-13	Rheumatology (Oxford)	An Immunochip-based interaction study of contrasting interaction effects with smoking in ACPA-positive versus ACPA-negative rheumatoid arthritis.	ACPA-positive rheumatoid arthritis (smoking interaction)	340 European ancestry never-smoker cases, 493 European ancestry ever-smoker cases, 746 European ancestry never-smoker controls, 994 European ancestry ever-smoker controls	187 European ancestry never-smoker cases, 421 European ancestry ever-smoker cases, 461 European ancestry never-smoker controls, 447 European ancestry ever-smoker controls	6p21.32	NR	rs9275334-?	NR	2E-6	(adjusted for HLA shared epitope)	1.724138	[1.22-2.94]	Illumina [133648] (imputed)	N
834	chr6	32667170	32667171	rs1794280	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hyperthyroidism	3,557 European ancestry cases, 456,942 European ancestry controls, 994 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	6p21.32		rs1794280-T	NR	2E-44		0.5463	[0.47-0.62] unit increase	Affymetrix, Illumina [25841580] (imputed)	N
834	chr6	32667170	32667171	rs1794280	30854688	Wang C	2019-03-10	Hepatology	Genome Wide Association Studies of Specific Antinuclear Autoantibody Sub-phenotypes in Primary Biliary Cholangitis.	Anti-sp100 seropositivity in primary biliary cholangitis	211 Han Chinese ancestry cases, 711 Han Chinese ancestry controls	234 Han Chinese ancestry cases, 1,018 Han Chinese ancestry controls	6p21.32	NR	rs1794280-T	0.181	6E-28		3.89	[3.05-4.96]	Illumina [794531]	N
834	chr6	32667363	32667364	rs17427599	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (anti-inflammatory and antirheumatic products, non-steroids)	29,694 East Asian ancestry cases, 149,032 East Asian ancestry controls	NA	6p21.32		rs17427599-T	0.278563857	1E-13		0.07483624	[0.055-0.095] unit increase	Illumina [13429980] (imputed)	N
834	chr6	32667472	32667473	rs1794514	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Autoimmune hepatitis	821 European ancestry cases, 484,413 European ancestry controls, 85 East Asian ancestry cases, 166,529 East Asian ancestry controls	NA	6p21.32		rs1794514-C	NR	6E-14		0.5013	[0.37-0.63] unit increase	Affymetrix, Illumina [25843756] (imputed)	N
834	chr6	32667505	32667506	rs188230545	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	124,341 East Asian ancestry individuals	NA	6p21.32		rs188230545-T	0.154874	1E-8		0.0301327	[0.02-0.04] unit increase	Illumina [13476323] (imputed)	N
834	chr6	32667519	32667520	rs3104394	32534018	Liu X	2020-06-10	Brain Behav Immun	Genetic factors underlying the bidirectional relationship between autoimmune and mental disorders - findings from a Danish population-based study.	Autoimmune traits	1,383 Danish ancestry cases, 62,656 Danish ancestry controls	NA	6p21.32	NR	rs3104394-G	0.16	3E-20		0.57	[0.50-0.65]	NR [7721839] (imputed)	N
834	chr6	32667595	32667596	rs2133037	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	IgG levels	15,536 Icelandic ancestry individuals	2,158 Swedish ancestry individuals	6p21.32	HLA-DQB1	rs2133037-A	0.0524	2E-14		0.19	NR SD units decrease	Illumina [21568490] (imputed)	N
834	chr6	32667662	32667663	rs9275349	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	Systemic lupus erythematosus	1,639 East Asian ancestry cases, 2,410 East Asian ancestry controls	NA			rs9275349-C	NR	5E-25		0.5726	[0.46-0.68] unit decrease	Illumina [NR] (imputed)	N
834	chr6	32667761	32667762	rs2856723	28921602	Lee MH	2017-09-16	Hepatology	Human leukocyte antigen variants and risk of hepatocellular carcinoma modified by hepatitis C virus genotypes: A genome-wide association study.	Hepatocellular carcinoma in hepatitis C infection	502 Chinese ancestry cases, 749 Chinese ancestry controls	669 Chinese ancestry cases, 429 Chinese ancestry controls	6p21.32	HLA-DQB1	rs2856723-?		3E-43		2.68	[2.32-3.09]	Affymetrix [576032]	N
834	chr6	32667894	32667895	rs9275358	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p21.32	HLA-DQB1	rs9275358-G	0.475	3E-7		0.083	[0.052-0.114] unit decrease	Affymetrix, Illumina [7374092] (imputed)	N
834	chr6	32667909	32667910	rs2647044	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	6p21.32	BRD2, BTNL2, C6orf10, HCG23, HLA-DMA, HLA-DMB, HLA-DOA, HLA-DOB, HLA-DPA1, HLA-DQA1, HLA-DQA2, HLA-DQB1, HLA-DQB2, HLA-DRA, HLA-DRB1, HLA-DRB5, HLA-DRB6, LOC100294145, NOTCH4, PSMB8, PSMB9, TAP1, TAP2, TAPSAR1	rs2647044-A	0.14736	4E-15		1.1522182	[1.12-1.19]	Affymetrix [8274727] (imputed)	N
834	chr6	32667909	32667910	rs2647044	21946350	Soler Artigas M	2011-09-25	Nat Genet	Genome-wide association and large-scale follow up identifies 16 new loci influencing lung function.	Pulmonary function	48,201 European ancestry individuals	46,411 European ancestry individuals	6p21.32	HLA-DQB1	rs2647044-G	NR	6E-6	(FEV1/FVC)	0.044	[0.024-0.064] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
834	chr6	32667909	32667910	rs2647044	17632545	Hakonarson H	2007-07-15	Nature	A genome-wide association study identifies KIAA0350 as a type 1 diabetes gene.	Type 1 diabetes	467 European ancestry trios, 561 European ancestry cases, 1,143 European ancestry controls	390 European ancestry trios, 1,333 European ancestry cases from 549 families	6p21.32	HLA-DRB1	rs2647044-A	0.13	1E-16		8.3	[6.97-9.89]	Illumina [543071]	N
834	chr6	32667963	32667964	rs36030018	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs36030018-C	0.109	3E-36	(conditional)	1.586	[1.51-1.66]	Illumina [11270530] (imputed)	N
834	chr6	32668030	32668031	rs2856721	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	6p21.32		rs2856721-C	0.467255784	1E-9		0.056245904	[0.038-0.074] unit decrease	Illumina [13429769] (imputed)	N
834	chr6	32668030	32668031	rs2856721	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	46,511 Asian ancestry cases, 169,776 Asian ancestry controls	NA	6p21.32	NR	rs2856721-C	0.4659	5E-10		0.0572	[0.039-0.075] unit decrease	Affymetrix, Illumina [1077427] (imputed)	N
834	chr6	32668099	32668100	rs2647045	23349640	Vijai J	2013-01-17	PLoS Genet	Susceptibility loci associated with specific and shared subtypes of lymphoid malignancies.	Lymphoma	275 Follicular non-Hodgkin's Lymphoma cases, 269 diffuse large B-cell non-Hodgkin's Lymphoma cases, 198 other non-Hodgkin's Lymphoma cases, 202 Hodgkin's Lymphoma cases, 4,044 controls	202 European ancestry Follicular non-Hodgkin's Lymphoma cases, 367 European ancestry diffuse large B-cell non-Hodgkin's Lymphoma cases, 577 European ancestry other non-Hodgkin's Lymphoma cases, 99 European ancestry Hodgkin's Lymphoma cases, 2,596 European ancestry controls	6p21.32	HLA-DQA2, HLA-DQB1	rs2647045-?	NR	4E-10	(FL)	1.69	[NR]	Affymetrix [530583]	N
834	chr6	32668322	32668323	rs2858310	27286809	Ligthart S	2016-06-10	BMC Genomics	Bivariate genome-wide association study identifies novel pleiotropic loci for lipids and inflammation.	C-reactive protein levels or total cholesterol levels (pleiotropy)	65,000 individuals (C-reactive protein), 100,184 individuals (total cholesterol)	NA	6p21.32	HLA-DQB1	rs2858310-A	NR	4E-12				NR [2501549] (imputed)	N
834	chr6	32668335	32668336	rs2647046	23349640	Vijai J	2013-01-17	PLoS Genet	Susceptibility loci associated with specific and shared subtypes of lymphoid malignancies.	Lymphoma	275 Follicular non-Hodgkin's Lymphoma cases, 269 diffuse large B-cell non-Hodgkin's Lymphoma cases, 198 other non-Hodgkin's Lymphoma cases, 202 Hodgkin's Lymphoma cases, 4,044 controls	202 European ancestry Follicular non-Hodgkin's Lymphoma cases, 367 European ancestry diffuse large B-cell non-Hodgkin's Lymphoma cases, 577 European ancestry other non-Hodgkin's Lymphoma cases, 99 European ancestry Hodgkin's Lymphoma cases, 2,596 European ancestry controls	6p21.32	HLA-DQA2, HLA-DQB1	rs2647046-?	NR	2E-6	(NHL)	1.25	[1.14-1.37]	Affymetrix [530583]	N
834	chr6	32668438	32668439	rs3135002	29404672	Roshandel D	2018-02-05	Diabetologia	Meta-genome-wide association studies identify a locus on chromosome 1 and multiple variants in the MHC region for serum C-peptide in type 1 diabetes.	Random C-peptide levels in type I diabetes	1,497 European ancestry individuals	NA	6p21.32	MHC	rs3135002-A	0.03	3E-8				Illumina [8320327] (imputed)	N
834	chr6	32668438	32668439	rs3135002	29404672	Roshandel D	2018-02-05	Diabetologia	Meta-genome-wide association studies identify a locus on chromosome 1 and multiple variants in the MHC region for serum C-peptide in type 1 diabetes.	C-peptide levels in type I diabetes	3,479 European ancestry individuals	NA	6p21.32	MHC	rs3135002-A	0.03	7E-8				Illumina [7988630] (imputed)	N
834	chr6	32669017	32669018	rs1612904	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of HDL particles	115,082 European ancestry individuals	NA	6p21.32		rs1612904-C	0.38135	1E-10		0.0256884	[0.018-0.033] unit decrease	NR [11722792] (imputed)	N
834	chr6	32669017	32669018	rs1612904	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Perceived unattractiveness to mosquitoes	16,576 European ancestry individuals	NA	6p21.32	intergenic	rs1612904-C	NR	1E-8		0.136111	[0.089-0.183] unit increase	Illumina [7433384] (imputed)	N
834	chr6	32669017	32669018	rs1612904	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.32	Intergenic	rs1612904-C	NR	1E-13		0.0245272	[0.018-0.031] unit increase	Illumina [13520550] (imputed)	N
834	chr6	32669155	32669156	rs9275390	21779181	Gorlova O	2011-07-14	PLoS Genet	Identification of novel genetic markers associated with clinical phenotypes of systemic sclerosis through a genome-wide association strategy.	Systemic sclerosis	2,296 European ancestry cases, 5,172 European ancestry controls	3,175 European ancestry cases, 4,210 European ancestry controls	6p21.32	HLA-DQB1	rs9275390-?	0.75	1E-7	(ATA positive)	1.61	[1.35-1.92]	Illumina [NR] (imputed)	N
834	chr6	32669155	32669156	rs9275390	21779181	Gorlova O	2011-07-14	PLoS Genet	Identification of novel genetic markers associated with clinical phenotypes of systemic sclerosis through a genome-wide association strategy.	Systemic sclerosis	2,296 European ancestry cases, 5,172 European ancestry controls	3,175 European ancestry cases, 4,210 European ancestry controls	6p21.32	HLA-DQB1	rs9275390-?	0.25	3E-54	(ACA positive)	2.38	[2.13-2.67]	Illumina [NR] (imputed)	N
834	chr6	32669372	32669373	rs11752643	31213470	Moon JY	2019-06-18	Diabetes Care	A Genome-Wide Association Study Identifies Blood Disorder-Related Variants Influencing Hemoglobin A1c With Implications for Glycemic Status in U.S. Hispanics/Latinos.	Glycated hemoglobin levels	9,636 Hispanic/Latino individuals	4,777 Hispanic/Latino individuals	6p21.32	HLA-DQA2	rs11752643-T	0.017	2E-6		0.096	[0.061-0.131] % increase	Illumina [11510031] (imputed)	N
834	chr6	32669372	32669373	rs11752643	21971053	Takeuchi F	2011-10-05	Eur J Hum Genet	Genome-wide association study of coronary artery disease in the Japanese.	Coronary heart disease	806 Japanese ancestry cases, 1,337 Japanese ancestry controls	3,593 Japanese ancestry cases, 6,335 Japanese ancestry controls	6p21.32	HLA, DRB-DQB	rs11752643-T	0.06	5E-7		1.26	[1.15-1.38]	Illumina [451382]	N
834	chr6	32669766	32669767	rs2647050	26030696	Cho MH	2015-06-01	Am J Respir Crit Care Med	A Genome-Wide Association Study of Emphysema and Airway Quantitative Imaging Phenotypes.	Emphysema imaging phenotypes	5,385 European ancestry chronic obstructive pulmonary disease cases, 901 African American chronic obstructive pulmonary disease cases, 3,613 European ancestry controls, 2,132 African American controls	NA	6p21.32	HLA-DQB1	rs2647050-T	NR	1E-6	(Perc15, All)	1.6	[0.66-2.54] unit increase	Illumina [7600000] (imputed)	N
834	chr6	32669954	32669955	rs9275406	23918589	Negi S	2013-12-01	Arthritis Rheum	A genome-wide association study reveals ARL15, a novel non-HLA susceptibility gene for rheumatoid arthritis in North Indians.	Rheumatoid arthritis	706 North Indian ancestry cases, 761 North Indian ancestry controls	927 North Indian ancestry cases, 1,148 North Indian ancestry controls	6p21.32	HLA-DQA2, HLA-DQB1, C6orf10, HLA-DQA1	rs9275406-T	0.17	3E-12		2.1	[1.72-2.68]	Illumina [559348]	N
834	chr6	32670135	32670136	rs3135001	32276964	Shete S	2020-04-10	Cancer Res	A genome-wide association study identifies two novel susceptible regions for squamous cell carcinoma of the head and neck.	Head and neck squamous cell carcinoma	2,171 European ancestry cases, 4,493 European ancestry controls	5,205 European ancestry cases, 3,232 European ancestry controls	6p21.32	HLA-DQB1	rs3135001-C	0.79	1E-16		1.2987013	[1.22-1.37]	Illumina [7858089] (imputed)	N
834	chr6	32670254	32670255	rs2856718	25802187	Jiang DK	2015-04-28	Hepatology	Genetic variants in five novel loci including CFB and CD40 predispose to chronic hepatitis B.	Chronic hepatitis B infection	2,514 Chinese ancestry cases, 1,130 Chinese ancestry controls	6,600 Chinese ancestry cases, 8,127 Chinese ancestry controls	6p21.32	HLA-DQB1	rs2856718-C	0.55	7E-28		1.28	[1.22-1.33]	Illumina [3680900] (imputed)	N
834	chr6	32670254	32670255	rs2856718	23760081	Kim YJ	2013-06-10	Hum Mol Genet	A genome-wide association study identified new variants associated with the risk of chronic hepatitis B.	Chronic hepatitis B infection	400 Korean ancestry cases, 1,000 Korean ancestry controls	971 Korean ancestry cases, 1,938 Korean ancestry controls	6p21.32	HLA-DQ	rs2856718-?	NR	2E-24		1.6	[1.46-1.75]	Illumina [719265]	N
834	chr6	32670254	32670255	rs2856718	21750111	Mbarek H	2011-07-12	Hum Mol Genet	A genome-wide association study of chronic hepatitis B identified novel risk locus in a Japanese population.	Hepatitis B	458 Japanese ancestry cases, 2,056 Japanese ancestry controls	2,209 Japanese ancestry cases, 4,440 Japanese ancestry controls	6p21.32	HLA-DQB1	rs2856718-A	0.48	4E-37		1.56	[1.45-1.67]	Illumina [423627]	N
834	chr6	32670307	32670308	rs2856717	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	6p21.32	HLA-DQB1, HLA-DQA1, HLA-DRB1	rs2856717-G	0.77	5E-10	(East Asian)	1.38	[NR]	Illumina [> 1000000] (imputed)	N
834	chr6	32670307	32670308	rs2856717	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	6p21.32	HLA-DQB1, HLA-DQA1, HLA-DRB1	rs2856717-G	0.62	5E-8	(EA)	1.21	[NR]	Illumina [> 1000000] (imputed)	N
834	chr6	32670307	32670308	rs2856717	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	6p21.32	HLA-DQB1, HLA-DQA1, HLA-DRB1	rs2856717-G	0.62	1E-15		1.27	[NR]	Illumina [> 1000000] (imputed)	N
834	chr6	32670832	32670833	rs34492195	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs34492195-A	0.2	1E-8		4.23	[3.24-5.52]	Illumina [NR] (imputed)	N
834	chr6	32670896	32670897	rs2647051	30593799	Vergara C	2018-12-26	Gastroenterology	Multi-Ancestry Genome-Wide Association Study of Spontaneous Clearance of Hepatitis C Virus.	Hepatitis C (spontaneous viral clearance)	701 European ancestry cases, 1,035 European ancestry controls	NA	6p21.32	HLA-DQB1, HLA-DQA2	rs2647051-C	0.64	1E-9		1.79	NR	Illumina [8968220] (imputed)	N
834	chr6	32670977	32670978	rs9275428	28706201	Wei WH	2017-07-13	Sci Rep	Genotypic variability based association identifies novel non-additive loci DHCR7 and IRF4 in sero-negative rheumatoid arthritis.	Sero-negative rheumatoid arthritis	3,323 European ancestry cases, 15,785 European ancestry controls	NA	6p21.32	HLA-DQB1	rs9275428-?	NR	2E-24				Illumina [107144]	N
834	chr6	32671102	32671103	rs13192471	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Non-melanoma skin cancer	5,912 European ancestry cases, 181,740 European ancestry controls		6p21.32	NR	rs13192471-T	NR	7E-8		1.1493434	[1.09-1.21]	Affymetrix [5734850] (imputed)	N
834	chr6	32671102	32671103	rs13192471	20453841	Kochi Y	2010-05-09	Nat Genet	A regulatory variant in CCR6 is associated with rheumatoid arthritis susceptibility.	Rheumatoid arthritis	2,303 Japanese ancestry cases, 3,380 Japanese ancestry controls	4,768 Japanese ancestry cases, 17,359 Japanese ancestry controls	6p21.32	HLA-DRB1	rs13192471-G	0.22	2E-58		1.97	[1.82-2.14]	Illumina [393217]	N
834	chr6	32671206	32671207	rs1794511	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	IgD on IgD+ CD24+ B cell	3,656 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs1794511-G	0.25863	7E-13		0.2439	[0.18-0.31] unit decrease	Illumina [18238197] (imputed)	N
834	chr6	32671247	32671248	rs1794275	22197929	Yu XQ	2011-12-25	Nat Genet	A genome-wide association study in Han Chinese identifies multiple susceptibility loci for IgA nephropathy.	IgA nephropathy	1,434 Han Chinese ancestry cases, 4,270 Han Chinese ancestry controls	2,703 Han Chinese ancestry cases, 3,464 Han Chinese ancestry controls	6p21.32	HLA-DQA/B	rs1794275-A	0.15	3E-13		1.3	[1.21-1.39]	Illumina [444882]	N
834	chr6	32671971	32671972	rs6907732	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on CD33dim HLA DR+ CD11b+	1,634 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs6907732-G	0.45576	3E-8		0.2461	[0.16-0.33] unit increase	Illumina [16998734] (imputed)	N
834	chr6	32672088	32672089	rs3134995	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	6p21.32	HLA-DQB1, HLA-DQA2	rs3134995-T	0.242	4E-26		0.0648904	[0.053-0.077] unit decrease	Illumina [13520550] (imputed)	N
834	chr6	32672640	32672641	rs9275477	34873335	van Rheenen W	2021-12-06	Nat Genet	Common and rare variant association analyses in amyotrophic lateral sclerosis identify 15 risk loci with distinct genetic architectures and neuron-specific biology.	Amyotrophic lateral sclerosis	27,205 European ancestry cases, 110,881 European ancestry controls, 2,407 East Asian ancestry cases, 11,775 East Asian ancestry controls	NA			rs9275477-C	NR	4E-12		0.142	[0.1-0.18] unit decrease	Illumina [10461755] (imputed)	N
834	chr6	32672640	32672641	rs9275477	34873335	van Rheenen W	2021-12-06	Nat Genet	Common and rare variant association analyses in amyotrophic lateral sclerosis identify 15 risk loci with distinct genetic architectures and neuron-specific biology.	Amyotrophic lateral sclerosis	27,205 European ancestry cases, 110,881 European ancestry controls	NA	6p21.32		rs9275477-C	0.096	6E-12		0.143	[0.1-0.18] unit decrease	Illumina [10461755] (imputed)	N
834	chr6	32673573	32673574	rs9275495	26272072	Jiang X	2015-08-13	Rheumatology (Oxford)	An Immunochip-based interaction study of contrasting interaction effects with smoking in ACPA-positive versus ACPA-negative rheumatoid arthritis.	ACPA-positive rheumatoid arthritis (smoking interaction)	340 European ancestry never-smoker cases, 493 European ancestry ever-smoker cases, 746 European ancestry never-smoker controls, 994 European ancestry ever-smoker controls	187 European ancestry never-smoker cases, 421 European ancestry ever-smoker cases, 461 European ancestry never-smoker controls, 447 European ancestry ever-smoker controls	6p21.32	NR	rs9275495-?	NR	2E-6	(adjusted for HLA shared epitope)	1.724138	[1.22-2.94]	Illumina [133648] (imputed)	N
834	chr6	32673725	32673726	rs9275497	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6p21.32	MTCO3P1	rs9275497-G	0.239038	1E-18		0.025688766	[0.02-0.031] unit increase	Affymetrix [93095623] (imputed)	N
834	chr6	32674224	32674225	rs35332745	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs35332745-C	0.2	2E-8		4.11	[3.16-5.35]	Illumina [NR] (imputed)	N
834	chr6	32674328	32674329	rs9275511	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Adult onset asthma or type 2 diabetes	33,418 European ancestry asthma cases, 393,186 European ancestry asthma controls, 159,208 European ancestry diabetes cases and controls	NA	6p21.32	NR	rs9275511-?	NR	4E-18				Affymetrix [up to 8270000] (imputed)	N
834	chr6	32674642	32674643	rs9275516	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs9275516-A	0.48	1E-8		0.18	[0.13-0.25]	Illumina [NR] (imputed)	N
834	chr6	32674724	32674725	rs17206287	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs17206287-A	0.858	2E-12		1.2	[1.15-1.25]	Illumina [11270530] (imputed)	N
834	chr6	32674736	32674737	rs1794265	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	NR	rs1794265-C	0.945894807901907	8E-6	(IGP1)	0.3014	[0.17-0.43] unit decrease	Illumina [~ 2500000] (imputed)	N
834	chr6	32674736	32674737	rs1794265	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	NR	rs1794265-C	0.945736455079007	1E-6	(IGP19)	0.3272	[0.2-0.46] unit decrease	Illumina [~ 2500000] (imputed)	N
834	chr6	32674736	32674737	rs1794265	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	NR	rs1794265-C	0.945425811930783	3E-7	(IGP41)	0.3448	[0.21-0.48] unit decrease	Illumina [~ 2500000] (imputed)	N
834	chr6	32675066	32675067	rs17206350	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	MTCO3P1	rs17206350-C	NR	9E-9		0.0179759	[0.012-0.024] unit increase	Affymetrix [323858] (imputed)	N
834	chr6	32675066	32675067	rs17206350	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	MTCO3P1	rs17206350-C	NR	4E-8		0.0171917	[0.011-0.023] unit increase	Affymetrix [127266] (imputed)	N
834	chr6	32675066	32675067	rs17206350	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	MTCO3P1	rs17206350-C	NR	2E-8		0.0159877	[0.01-0.022] unit increase	Affymetrix [321114] (imputed)	N
834	chr6	32675108	32675109	rs9275524	25608926	Betz RC	2015-01-22	Nat Commun	Genome-wide meta-analysis in alopecia areata resolves HLA associations and reveals two new susceptibility loci.	Alopecia areata	2,332 European ancestry cases and 5,233 European ancestry controls	764 European ancestry cases and 2,256 European ancestry controls	6p21.32	HLA-DQB1	rs9275524-C	NR	2E-60		1.92		Illumina [1233578] (imputed)	N
834	chr6	32675108	32675109	rs9275524	23453885	Smoller JW	2013-02-27	Lancet	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NA	6p21.32	intergenic	rs9275524-T		2E-7	(Modelling analysis)	1.07	[1.04-1.09]	NR [1252901] (imputed)	N
834	chr6	32675469	32675470	rs12525220	24782177	Jiang L	2014-05-01	Arthritis Rheumatol	Novel risk loci for rheumatoid arthritis in Han Chinese and congruence with risk variants in Europeans.	Rheumatoid arthritis	433 Han Chinese ancestry ACPA positive cases, 519 Han Chinese ancestry ACPA negative cases, 943 Han Chinese ancestry controls	1,032 Han Chinese ancestry ACPA positive cases, 1,100 Han Chinese ancestry ACPA negative cases, 2,553 Han Chinese ancestry controls	6p21.32	HLA-DQA2, MHC, HLA-DQB1	rs12525220-A	0.057	7E-14	(ACPA+ cases vs. all controls)	3.015	[NR]	Affymetrix [3441843] (imputed)	N
834	chr6	32675469	32675470	rs12525220	24782177	Jiang L	2014-05-01	Arthritis Rheumatol	Novel risk loci for rheumatoid arthritis in Han Chinese and congruence with risk variants in Europeans.	Rheumatoid arthritis	433 Han Chinese ancestry ACPA positive cases, 519 Han Chinese ancestry ACPA negative cases, 943 Han Chinese ancestry controls	1,032 Han Chinese ancestry ACPA positive cases, 1,100 Han Chinese ancestry ACPA negative cases, 2,553 Han Chinese ancestry controls	6p21.32	HLA-DQA2, MHC, HLA-DQB1	rs12525220-A	0.057	3E-12	(all cases vs. all controls)	2.608	[NR]	Affymetrix [3441843] (imputed)	N
834	chr6	32675469	32675470	rs12525220	24782177	Jiang L	2014-05-01	Arthritis Rheumatol	Novel risk loci for rheumatoid arthritis in Han Chinese and congruence with risk variants in Europeans.	Rheumatoid arthritis	433 Han Chinese ancestry ACPA positive cases, 519 Han Chinese ancestry ACPA negative cases, 943 Han Chinese ancestry controls	1,032 Han Chinese ancestry ACPA positive cases, 1,100 Han Chinese ancestry ACPA negative cases, 2,553 Han Chinese ancestry controls	6p21.32	HLA-DQA2, MHC, HLA-DQB1	rs12525220-A	0.057	2E-13	(ACPA- cases vs. all controls)	2.869	[NR]	Affymetrix [3441843] (imputed)	N
834	chr6	32675522	32675523	rs9275530	26272072	Jiang X	2015-08-13	Rheumatology (Oxford)	An Immunochip-based interaction study of contrasting interaction effects with smoking in ACPA-positive versus ACPA-negative rheumatoid arthritis.	ACPA-positive rheumatoid arthritis (smoking interaction)	340 European ancestry never-smoker cases, 493 European ancestry ever-smoker cases, 746 European ancestry never-smoker controls, 994 European ancestry ever-smoker controls	187 European ancestry never-smoker cases, 421 European ancestry ever-smoker cases, 461 European ancestry never-smoker controls, 447 European ancestry ever-smoker controls	6p21.32	NR	rs9275530-?	NR	2E-6	(adjusted for HLA shared epitope)	1.724138	[1.23-2.94]	Illumina [133648] (imputed)	N
834	chr6	32675633	32675634	rs9275532	26272072	Jiang X	2015-08-13	Rheumatology (Oxford)	An Immunochip-based interaction study of contrasting interaction effects with smoking in ACPA-positive versus ACPA-negative rheumatoid arthritis.	ACPA-positive rheumatoid arthritis (smoking interaction)	340 European ancestry never-smoker cases, 493 European ancestry ever-smoker cases, 746 European ancestry never-smoker controls, 994 European ancestry ever-smoker controls	187 European ancestry never-smoker cases, 421 European ancestry ever-smoker cases, 461 European ancestry never-smoker controls, 447 European ancestry ever-smoker controls	6p21.32	NR	rs9275532-?	NR	5E-6	(adjusted for HLA shared epitope)	1.754386	[1.23-3.12]	Illumina [133648] (imputed)	N
834	chr6	32676250	32676251	rs3129721	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	IgA nephropathy	1,180 East Asian ancestry cases, 899 East Asian ancestry controls	NA			rs3129721-A	NR	6E-10		0.530478	[0.36-0.7] unit increase	Illumina [NR] (imputed)	N
834	chr6	32676250	32676251	rs3129721	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA		NR	rs3129721-?	NR	7E-7		0.0367	[0.022-0.051] unit decrease	Illumina [at least 560000] (imputed)	N
834	chr6	32677412	32677413	rs17615220	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	6p21.32	MTCO3P1	rs17615220-G	0.055013	3E-10		0.035653602	[0.025-0.047] unit decrease	Affymetrix [93095623] (imputed)	N
834	chr6	32677845	32677846	rs4947344	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	MTCO3P1	rs4947344-T	NR	6E-9		0.0183059	[0.012-0.024] unit decrease	Affymetrix [319769] (imputed)	N
834	chr6	32677845	32677846	rs4947344	31375628	Tengvall K	2019-08-02	Proc Natl Acad Sci U S A	Molecular mimicry between Anoctamin 2 and Epstein-Barr virus nuclear antigen 1 associates with multiple sclerosis risk.	Anti-anoctamin 2 antibody levels	11,936 European ancestry individuals	NA	6p21.32	NR	rs4947344-A	NR	1E-9		0.056	[0.032-0.080] unit increase	Illumina [615763]	N
834	chr6	32677845	32677846	rs4947344	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p21.32	NR	rs4947344-?	NR	1E-24		0.2606	[0.21-0.31] unit decrease	Illumina [at least 560000] (imputed)	N
834	chr6	32677911	32677912	rs9275563	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	MTCO3P1	rs9275563-T	NR	4E-11		0.0202974	[0.014-0.026] unit decrease	Affymetrix [323123] (imputed)	N
834	chr6	32677911	32677912	rs9275563	23472185	Mero IL	2013-03-05	PLoS One	Oligoclonal band status in Scandinavian multiple sclerosis patients is associated with specific genetic risk alleles.	Multiple sclerosis (OCB status)	1,367 European ancestry OCB positive cases, 161 European ancestry OCB negative cases, 428 European ancestry controls	NA	6p21.32	HLA-DQA2	rs9275563-?	NR	6E-11	(OCB positive vs. controls)	1.75	[1.47-2.04]	Illumina [495970]	N
834	chr6	32678181	32678182	rs6932517	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs6932517-C	0.48	2E-8		0.19	[0.14-0.27]	Illumina [NR] (imputed)	N
834	chr6	32678198	32678199	rs9275570	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma and/or BMI	28,862 European ancestry cases, 422,048 European ancestry controls, 6,912 European ancestry individuals	NA	6p21.32	NR	rs9275570-G	NR	2E-19				Affymetrix [~ 8270000] (imputed)	N
834	chr6	32678198	32678199	rs9275570	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	6p21.32	NR	rs9275570-?	NR	3E-18				Affymetrix [~ 8270000] (imputed)	N
834	chr6	32678423	32678424	rs2894281	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	6p21.32	MTCO3P1	rs2894281-A	0.50383	7E-14		0.018175296	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
834	chr6	32678596	32678597	rs4273729	23420232	Duggal P	2013-02-19	Ann Intern Med	Genome-wide association study of spontaneous resolution of hepatitis C virus infection: data from multiple cohorts.	Chronic hepatitis C infection	1,482 chronic HCV cases, 919 spontaneously cleared HCV cases	461 chronic HCV cases, 284 spontaneously cleared HCV cases	6p21.32	HLA	rs4273729-?	NR	5E-17		1.59		Illumina [792721] (imputed)	N
834	chr6	32678998	32678999	rs9275572	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs9275572-A	0.48	8E-9		0.17	[0.12-0.24]	Illumina [NR] (imputed)	N
834	chr6	32678998	32678999	rs9275572	24871463	Armstrong DL	2014-05-29	Genes Immun	GWAS identifies novel SLE susceptibility genes and explains the association of the HLA region.	Systemic lupus erythematosus	725 European ancestry cases, 2,438 European ancestry controls	NA	6p21.32	HLA-DQA2	rs9275572-A	0.4	5E-16		1.74	[1.64-1.85]	Illumina [NR]	N
834	chr6	32678998	32678999	rs9275572	24376798	Miki D	2013-12-20	PLoS One	HLA-DQB1*03 confers susceptibility to chronic hepatitis C in Japanese: a genome-wide association study.	Chronic hepatitis C infection	481 Japanese ancestry cases, 2,963 Japanese ancestry controls	5,737 Japanese ancestry cases, 26,931 Japanese ancestry controls	6p21.32	HLA-DQB1, HLA-DQA1	rs9275572-T	0.359	4E-16		1.27	[1.19-1.33]	Illumina [458207]	N
834	chr6	32678998	32678999	rs9275572	21499248	Kumar V	2011-04-17	Nat Genet	Genome-wide association study identifies a susceptibility locus for HCV-induced hepatocellular carcinoma.	Hepatocellular carcinoma	721 Japanese ancestry cases, 2,890 Japanese ancestry controls	673 Japanese ancestry cases, 2,596 Japanese ancestry controls	6p21.32	HLA-DQ, HLA-DR	rs9275572-A	0.36	6E-9		1.3	[1.19-1.42]	Illumina [432703]	N
834	chr6	32678998	32678999	rs9275572	20596022	Petukhova L	2010-07-01	Nature	Genome-wide association study in alopecia areata implicates both innate and adaptive immunity.	Alopecia areata	Up to 1,054 European ancestry cases, 3,278 European ancestry controls	NA	6p21.32	HLA-DQA2	rs9275572-G	0.59	1E-35		2.21	[1.98-2.47]	Illumina [463301]	N
834	chr6	32679325	32679326	rs9275576	31837886	Kennedy OJ	2019-12-02	Am J Kidney Dis	Coffee Consumption and Kidney Function: A Mendelian Randomization Study.	Coffee consumption (cups per day)	227,666 British ancestry individuals	NA	6p21.32	HLA-DQA2	rs9275576-T	0.146	6E-9		0.048	NR cups per day increase	NR [NR]	N
834	chr6	32679383	32679384	rs9275578	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs9275578-T	0.31	1E-9		4.62	[3.51-6.10]	Illumina [NR] (imputed)	N
834	chr6	32679458	32679459	rs9275579	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	MTCO3P1	rs9275579-A	NR	2E-11		0.0245816	[0.017-0.032] unit decrease	Affymetrix [323123] (imputed)	N
834	chr6	32679461	32679462	rs9275580	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs9275580-G	0.33	3E-8		3.96	[3.03-5.19]	Illumina [NR] (imputed)	N
834	chr6	32680069	32680070	rs9275582	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs9275582-T	0.31	1E-9		4.54	[3.45-5.98]	Illumina [NR] (imputed)	N
834	chr6	32680069	32680070	rs9275582	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (non-Lofgren's syndrome without extrapulmonary manifestations)	451 Swedish ancestry cases, 2,086 Swedish ancestry controls	NA	6p21.32	HLA-DQB1, HLA-DQA2, HLA-DQA1	rs9275582-G	0.83	2E-11		1.8705574	[1.57-2.24]	Illumina [118177]	N
834	chr6	32680121	32680122	rs3135461	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs3135461-A	0.841	2E-39		0.726	[0.68-0.77]	Illumina [11270530] (imputed)	N
834	chr6	32680121	32680122	rs3135461	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.32		rs3135461-A	0.773542	8E-36		1.0648913	[1.05-1.08]	Affymetrix, Illumina [9851866] (imputed)	N
834	chr6	32680378	32680379	rs9275587	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	XXbac-BPG254F23.7	rs9275587-C	NR	5E-9		0.0184889	[0.012-0.025] unit increase	Affymetrix [323858] (imputed)	N
834	chr6	32680378	32680379	rs9275587	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	XXbac-BPG254F23.7	rs9275587-C	NR	2E-8		0.0178049	[0.012-0.024] unit increase	Affymetrix [127266] (imputed)	N
834	chr6	32680575	32680576	rs7764819	23284291	Hancock DB	2012-12-20	PLoS Genet	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (smoking interaction)	50,047 European ancestry individuals	NA	6p21.32	HLA-DQA2, HLA-DQB1	rs7764819-T	0.89	4E-9	(FEV1/FVC, Pack-years)	1.0E-4	[-0.00014-0.00025] unit decrease	NR [~ 2500000] (imputed)	N
834	chr6	32680575	32680576	rs7764819	23284291	Hancock DB	2012-12-20	PLoS Genet	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (smoking interaction)	50,047 European ancestry individuals	NA	6p21.32	HLA-DQA2, HLA-DQB1	rs7764819-T	0.89	4E-9	(FEV1/FVC, Ever-smoking)	0.001	[-0.04016-0.04216] unit decrease	NR [~ 2500000] (imputed)	N
834	chr6	32680619	32680620	rs9275592	28041642	Carmona FD	2016-12-29	Am J Hum Genet	A Genome-wide Association Study Identifies Risk Alleles in Plasminogen and P4HA2 Associated with Giant Cell Arteritis.	Giant cell arteritis	2,134 European ancestry cases, 9,125 European ancestry controls	NA	6p21.32	HLA-DQA1, HLA-DQA2	rs9275592-?	0.11	1E-40		2.08	[1.87-2.32]	Illumina [1844133] (imputed)	N
834	chr6	32680927	32680928	rs7765379	25383971	Dunstan SJ	2014-11-10	Nat Genet	Variation at HLA-DRB1 is associated with resistance to enteric fever.	Enteric fever	432 Vietnamese ancestry cases, 2,011 Vietnamese ancestry controls	151 Vietnamese ancestry cases,  668 Vietnamese ancestry controls, 595 Nepalese ancestry cases, 386 Nepalese ancestry controls	6p21.32	HLA-DRB1, HLA-DQB1	rs7765379-A	0.945	2E-13		4.55	[2.94-6.67]	Illumina [709725]	N
834	chr6	32680927	32680928	rs7765379	23266558	Yamazaki K	2012-12-21	Gastroenterology	A genome-wide association study identifies 2 susceptibility Loci for Crohn's disease in a Japanese population.	Crohn's disease	372 Japanese ancestry cases,3,389 Japanese ancestry controls	Up to 1,151 Japanese ancestry cases, up to 15,800 Japanese ancestry controls	6p21.32	HLA-DQA2, HLA-DOB, HLA-DQB1, PSMB9, HLA-DRB1, HLA-DQA1	rs7765379-G	NR	9E-59		1.93	[1.78-2.09]	Illumina [4929034] (imputed)	N
834	chr6	32680927	32680928	rs7765379	21452313	Freudenberg J	2011-04-01	Arthritis Rheum	Genome-wide association study of rheumatoid arthritis in Koreans: population-specific loci as well as overlap with European susceptibility loci.	Rheumatoid arthritis	801 Korean ancestry cases, 757 Korean ancestry controls	718 Korean ancestry cases, 719 Korean ancestry controls	6p21.32	HLA-DRB1	rs7765379-?		5E-23		2.51	[NR]	Illumina [441398]	N
834	chr6	32681160	32681161	rs2858332	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	XXbac-BPG254F23.7	rs2858332-T	NR	7E-18		0.0263625	[0.02-0.032] unit decrease	Affymetrix [323123] (imputed)	N
834	chr6	32681160	32681161	rs2858332	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	6p21.32	HLA-DQA2	rs2858332-T	0.50665382076412	7E-7	(G_Clostridium_sensu_stricto_RNT)	0.129415	[0.078-0.181] unit decrease	Illumina [7711310] (imputed)	N
834	chr6	32681276	32681277	rs2858331	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs2858331-G	0.33	4E-8		3.82	[2.93-4.97]	Illumina [NR] (imputed)	N
834	chr6	32681276	32681277	rs2858331	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Non-Hodgkin's lymphoma	2,400 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs2858331-G	NR	3E-7		1.1625204	NR	Affymetrix [7846216] (imputed)	N
834	chr6	32681276	32681277	rs2858331	23146381	Levin AM	2012-11-10	J Allergy Clin Immunol	A meta-analysis of genome-wide association studies for serum total IgE in diverse study populations.	IgE levels	2,469 African American individuals, 259 Latino individuals, 1,564 European ancestry individuals	2,961 African American individuals, 1,477 Latino individuals, 649 European ancestry individuals, 680 Hutterite individuals	6p21.32	HLA-DQA2	rs2858331-G	NR	6E-6				Affymetrix, Illumina [NR] (imputed)	N
834	chr6	32681276	32681277	rs2858331	22075330	Granada M	2011-11-08	J Allergy Clin Immunol	A genome-wide association study of plasma total IgE concentrations in the Framingham Heart Study.	IgE levels	6,819 European ancestry individuals	7,809 European ancestry indivduals	6p21.32	HLA-DQA2	rs2858331-G	NR	1E-8		0.04	[NR] unit decrease	Affymetrix [2540223] (imputed)	N
834	chr6	32681354	32681355	rs9275595	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	6p21.32	HLA-DQA2	rs9275595-T	0.763	6E-6		0.016	[0.0089-0.0227] kg/m2 increase	Affymetrix, Illumina [2550021]	N
834	chr6	32681354	32681355	rs9275595	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	6p21.32	HLA-DQA2	rs9275595-T	0.76	9E-6	(EA)	0.016	[0.009-0.0232] kg/m2 increase	Affymetrix, Illumina [2550021]	N
834	chr6	32681482	32681483	rs7454108	29857070	Gao J	2018-05-29	J Invest Dermatol	Association study and fine-mapping major histocompatibility complex analysis of pemphigus vulgaris in a Han Chinese population.	Pemphigus vulgaris	240 Han Chinese ancestry cases, 1,031 Han Chinese ancestry controls	252 Han Chinese ancestry cases, 1,852 Han Chinese ancestry controls	6p21.32	NR	rs7454108-?	NR	3E-12	(conditioned on HLA-DRB1*14:04)	3.25	[NR]	Illumina [802980]	N
834	chr6	32681482	32681483	rs7454108	28029757	Merkel PA	2016-12-28	Arthritis Rheumatol	Identification of Functional and Expression Polymorphisms Associated With Risk for Antineutrophil Cytoplasmic Autoantibody-Associated Vasculitis.	Vasculitis associated with antineutrophil cytoplasmic antibody reactive to myeloperoxidase	324 European ancestry cases and 3258 European ancestry controls.	54 European ancestry cases and 1465 European ancestry controls.	6p21.32	HLA-DQA2	rs7454108-C	0.10	5E-25		2.73	2.25-3.24	Affymetrix [at least 333035] (imputed)	N
834	chr6	32681482	32681483	rs7454108	26272072	Jiang X	2015-08-13	Rheumatology (Oxford)	An Immunochip-based interaction study of contrasting interaction effects with smoking in ACPA-positive versus ACPA-negative rheumatoid arthritis.	ACPA-positive rheumatoid arthritis (smoking interaction)	340 European ancestry never-smoker cases, 493 European ancestry ever-smoker cases, 746 European ancestry never-smoker controls, 994 European ancestry ever-smoker controls	187 European ancestry never-smoker cases, 421 European ancestry ever-smoker cases, 461 European ancestry never-smoker controls, 447 European ancestry ever-smoker controls	6p21.32	NR	rs7454108-?	NR	2E-6	(adjusted for HLA shared epitope)	1.724138	[1.22-2.94]	Illumina [133648] (imputed)	N
834	chr6	32681529	32681530	rs3957146	26272072	Jiang X	2015-08-13	Rheumatology (Oxford)	An Immunochip-based interaction study of contrasting interaction effects with smoking in ACPA-positive versus ACPA-negative rheumatoid arthritis.	ACPA-positive rheumatoid arthritis (smoking interaction)	340 European ancestry never-smoker cases, 493 European ancestry ever-smoker cases, 746 European ancestry never-smoker controls, 994 European ancestry ever-smoker controls	187 European ancestry never-smoker cases, 421 European ancestry ever-smoker cases, 461 European ancestry never-smoker controls, 447 European ancestry ever-smoker controls	6p21.32	NR	rs3957146-?	NR	1E-6	(adjusted for HLA shared epitope)	1.724138	[1.22-2.86]	Illumina [133648] (imputed)	N
834	chr6	32681630	32681631	rs9275596	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	IgA nephropathy	1,180 East Asian ancestry cases, 899 East Asian ancestry controls	NA	6p21.32	NR	rs9275596-T	NR	6E-10				Illumina [NR] (imputed)	N
834	chr6	32681630	32681631	rs9275596	32912934	Li M	2020-09-10	J Am Soc Nephrol	Genome-Wide Meta-Analysis Identifies Three Novel Susceptibility Loci and Reveals Ethnic Heterogeneity of Genetic Susceptibility for IgA Nephropathy.	IgA nephropathy	2,628 Chinese ancestry cases, 11,563 Chinese ancestry controls	6,879 Han Chinese ancestry cases, 9,019 Han Chinese ancestry controls, 1,039 Italian ancestry cases, 1,289 Italian ancestry controls	6p21.32	DQB1.DRB1	rs9275596-T	0.8466025166479287	2E-13	(East Asian)	1.4409347	[1.3070519220741-1.58853123859263]	NR [3611808] (imputed)	N
834	chr6	32681630	32681631	rs9275596	25710614	Hong X	2015-02-24	Nat Commun	Genome-wide association study identifies peanut allergy-specific loci and evidence of epigenetic mediation in US children.	Peanut allergy	316 European ancestry child cases, 144 European ancestry non-allergic non-sensitized normal child controls, 589 European ancestry uncertain phenotype child controls, 1,148 European ancestry uncertain phenotype adult controls	62 European ancestry child cases, 69 European ancestry child controls, 24 child cases, 58 child controls	6p21.32	HLA-DRB1, HLA-DQA1, HLA-DQB1, HLA-DQA2	rs9275596-C	0.35	6E-11	(EA)	1.7	[1.40-2.10]	Illumina [6459842] (imputed)	N
834	chr6	32681630	32681631	rs9275596	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	6p21.32	HLA-DQB1, HLA-DQA1, HLA-DRB1	rs9275596-T	0.8	1E-19	(East Asian)	1.69	[NR]	Illumina [> 1000000] (imputed)	N
834	chr6	32681630	32681631	rs9275596	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	6p21.32	HLA-DQB1, HLA-DQA1, HLA-DRB1	rs9275596-T	0.65	3E-31		1.44	[NR]	Illumina [> 1000000] (imputed)	N
834	chr6	32681630	32681631	rs9275596	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	6p21.32	HLA-DQB1, HLA-DQA1, HLA-DRB1	rs9275596-T	0.65	2E-15	(EA)	1.35		Illumina [> 1000000] (imputed)	N
834	chr6	32681630	32681631	rs9275596	21399633	Gharavi AG	2011-03-13	Nat Genet	Genome-wide association study identifies susceptibility loci for IgA nephropathy.	Nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls	712 Han Chinese ancestry cases, 748 Han Chinese ancestry controls, 1,238 European ancestry cases, 1,172 European ancestry controls	6p21.32	HLA-DQB1, HLA-DRB1, HLA-DQA1	rs9275596-?	0.73 (EA)	2E-26		1.59	[NR]	Illumina [498322]	N
834	chr6	32681668	32681669	rs6935723	25217962	Heap GA	2014-09-14	Nat Genet	HLA-DQA1-HLA-DRB1 variants confer susceptibility to pancreatitis induced by thiopurine immunosuppressants.	Response to thiopurine immunosuppressants in inflammatory bowel disease (pancreatitis) (azathioprine and mercaptopurine)	172 European ancestry cases, 2,035 European ancestry controls	78 European ancestry cases, 472 controls	6p21.32	HLA region	rs6935723-C	0.27	1E-21		2.46	[2.04-2.98]	Affymetrix, Illumina [2819700] (imputed)	N
834	chr6	32681675	32681676	rs3104402	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	XXbac-BPG254F23.7	rs3104402-T	NR	3E-10		0.035252	[0.024-0.046] unit increase	Affymetrix [323123] (imputed)	N
834	chr6	32681675	32681676	rs3104402	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	6p21.32	NR	rs3104402-?	NR	1E-8		0.1164	[0.076-0.157] unit decrease	Illumina [at least 560000] (imputed)	N
834	chr6	32681675	32681676	rs3104402	22658931	Pajewski NM	2012-05-30	Vaccine	A genome-wide association study of host genetic determinants of the antibody response to Anthrax Vaccine Adsorbed.	Immune response to anthrax vaccine	726 European ancestry individuals	NA	6p21.32	HLA-DRB1, HLA-DQA1	rs3104402-A	NR	6E-6		0.165	[0.094-0.236] unit decrease	Affymetrix [736996]	N
834	chr6	32681991	32681992	rs3998158	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs3998158-C	0.3	4E-9		4.39	[3.33-5.79]	Illumina [NR] (imputed)	N
834	chr6	32682018	32682019	rs3998159	26272072	Jiang X	2015-08-13	Rheumatology (Oxford)	An Immunochip-based interaction study of contrasting interaction effects with smoking in ACPA-positive versus ACPA-negative rheumatoid arthritis.	ACPA-positive rheumatoid arthritis (smoking interaction)	340 European ancestry never-smoker cases, 493 European ancestry ever-smoker cases, 746 European ancestry never-smoker controls, 994 European ancestry ever-smoker controls	187 European ancestry never-smoker cases, 421 European ancestry ever-smoker cases, 461 European ancestry never-smoker controls, 447 European ancestry ever-smoker controls	6p21.32	NR	rs3998159-?	NR	2E-6	(adjusted for HLA shared epitope)	1.724138	[1.22-2.94]	Illumina [133648] (imputed)	N
834	chr6	32682134	32682135	rs3957147	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	XXbac-BPG254F23.7	rs3957147-T	NR	5E-9		0.0232882	[0.015-0.031] unit increase	Affymetrix [323123] (imputed)	N
834	chr6	32682134	32682135	rs3957147	32534018	Liu X	2020-06-10	Brain Behav Immun	Genetic factors underlying the bidirectional relationship between autoimmune and mental disorders - findings from a Danish population-based study.	Autoimmune traits	1,383 Danish ancestry cases, 62,656 Danish ancestry controls	NA	6p21.32	NR	rs3957147-T	0.21	9E-9		1.34	[1.21-1.48]	NR [7721839] (imputed)	N
834	chr6	32682173	32682174	rs3104404	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	150,545 East Asian ancestry individuals	NA	6p21.32		rs3104404-A	0.356773	3E-10		0.0227	[0.016-0.03] unit decrease	Illumina [13478866] (imputed)	N
834	chr6	32682198	32682199	rs35122968	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p21.32	HLA-DQA2	rs35122968-C	0.043	4E-11		0.2	[0.14-0.26] unit increase	Affymetrix, Illumina [7374092] (imputed)	N
834	chr6	32682206	32682207	rs3129731	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	6p21.32		rs3129731-G	0.795841844	3E-12		0.07240271	[0.052-0.093] unit decrease	Illumina [13134967] (imputed)	N
834	chr6	32682227	32682228	rs2894381	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	6p21.32		rs2894381-A	0.422035	4E-8		0.0201838	[0.013-0.027] unit increase	Illumina [13476266] (imputed)	N
834	chr6	32682227	32682228	rs2894381	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	121,047 East Asian ancestry individuals	NA	6p21.32	NR	rs2894381-G	0.566792	3E-10		0.026702	[0.018-0.035] SD units decrease	Affymetrix, Illumina [16286195] (imputed)	N
834	chr6	32682227	32682228	rs2894381	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p21.32		rs2894381-?	NR	6E-9		0.0142926	[0.0092-0.0194] unit decrease	Affymetrix [20259828] (imputed)	N
834	chr6	32682393	32682394	rs3997848	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.32		rs3997848-T	0.676	4E-17				Affymetrix [10369434] (imputed)	N
834	chr6	32682393	32682394	rs3997848	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	XXbac-BPG254F23.7	rs3997848-G	NR	2E-8		0.0168279	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
834	chr6	32682393	32682394	rs3997848	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	XXbac-BPG254F23.7	rs3997848-G	NR	1E-8		0.0171568	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
834	chr6	32682393	32682394	rs3997848	33545615	Hsu LA	2021-01-19	Atherosclerosis	Circulating chemerin levels are determined through circulating platelet counts in nondiabetic Taiwanese people: A bidirectional Mendelian randomization study.	Chemerin levels	3,887 Han Chinese ancestry individuals	NA	6p21.32	HLA	rs3997848-?	NR	5E-8		0.017	[0.012-0.022] unit increase (adjusted)	Affymetrix [610203]	N
834	chr6	32682393	32682394	rs3997848	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p21.32	HLA-DQA2	rs3997848-G	0.117	2E-14		0.135	[0.1-0.17] unit increase	Affymetrix, Illumina [7374092] (imputed)	N
834	chr6	32682401	32682402	rs3997849	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p21.32	NR	rs3997849-T	0.262	3E-6	(IFNAR2_of_CD8p_T)			Illumina [5084123] (imputed)	N
834	chr6	32682428	32682429	rs9275599	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs9275599-T	0.032	2E-16	(conditional)	1.585	[1.48-1.69]	Illumina [11270530] (imputed)	N
834	chr6	32682589	32682590	rs113721192	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.32	Intergenic	rs113721192-?		1E-6		1.06	[1.03-1.08]	Illumina [7645193] (imputed)	N
834	chr6	32682589	32682590	rs113721192	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.32	Intergenic	rs113721192-?		3E-7		1.76	[1.42-2.18]	Illumina [7645193] (imputed)	N
834	chr6	32682663	32682664	rs9275601	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.32		rs9275601-C	0.559	2E-19				Affymetrix [10369434] (imputed)	N
834	chr6	32682663	32682664	rs9275601	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.32		rs9275601-C	0.559	1E-20				Affymetrix [10369434] (imputed)	N
834	chr6	32682811	32682812	rs9275602	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	XXbac-BPG254F23.7	rs9275602-A	NR	1E-8		0.0219542	[0.014-0.029] unit increase	Affymetrix [323123] (imputed)	N
834	chr6	32682811	32682812	rs9275602	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs9275602-?	NR	8E-10				Affymetrix [~ 8270000] (imputed)	N
834	chr6	32682811	32682812	rs9275602	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	6p21.32	NR	rs9275602-?	NR	5E-29	(conditional)			Affymetrix [15688218] (imputed)	N
834	chr6	32683563	32683564	rs200025476	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.32	NR	rs200025476-T	0.011	3E-9		0.507765	[0.34-0.67] unit increase	Affymetrix [up to 8900000] (imputed)	N
834	chr6	32683563	32683564	rs200025476	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.32	NR	rs200025476-T	0.011	2E-6	(women)	0.688868	[0.41-0.97] unit increase	Affymetrix [up to 8900000] (imputed)	N
834	chr6	32683679	32683680	rs9391746	33961016	Moksnes MR	2021-05-07	Hum Mol Genet	Genome-wide association study of cardiac troponin I in the general population.	High-sensitivity cardiac troponin I concentration	48,115 European ancestry individuals	NA	6p21.32		rs9391746-T	0.0718	1E-8		0.08	[0.06-0.1] unit increase	Illumina [26711992] (imputed)	N
834	chr6	32684343	32684344	rs5024431	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6p21.32		rs5024431-?	NR	6E-17		0.897905	[0.87-0.92]	NR [685523]	N
834	chr6	32684513	32684514	rs6457637	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on plasmacytoid Dendritic Cell	2,872 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs6457637-G	0.07647	9E-15		0.4484	[0.34-0.56] unit decrease	Illumina [17926607] (imputed)	N
834	chr6	32684934	32684935	rs9275642	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Skin cancer	25,928 European ancestry cases, 466,275 European ancestry controls, 154 East Asian ancestry cases, 178,572 East Asian ancestry controls	NA	6p21.32		rs9275642-T	NR	4E-21		0.1097	[0.087-0.132] unit decrease	Affymetrix, Illumina [25845421] (imputed)	N
834	chr6	32684934	32684935	rs9275642	27539887	Chahal HS	2016-08-19	Nat Commun	Genome-wide association study identifies 14 novel risk alleles associated with basal cell carcinoma.	Basal cell carcinoma	12.945 European ancestry cases, 274,252 European ancestry controls	4,242 European ancestry cases, 12,802 European ancestry controls	6p21.32	HLA-DQA2	rs9275642-C	0.79	2E-12		1.1235955	[NR]	Illumina [at least 560000] (imputed)	N
834	chr6	32685197	32685198	rs41288885	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.32	XXbac-BPG254F23.7	rs41288885-G	0.058676	5E-9		0.028841805	[0.019-0.039] unit increase	Affymetrix [93095623] (imputed)	N
834	chr6	32685197	32685198	rs41288885	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.32	NR	rs41288885-?	NR	9E-10				Affymetrix [~ 8270000] (imputed)	N
834	chr6	32685379	32685380	rs3998154	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.32		rs3998154-G	0.585	9E-27				Affymetrix [10369434] (imputed)	N
834	chr6	32685379	32685380	rs3998154	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p21.32		rs3998154-G	0.585	1E-22				Affymetrix [10369434] (imputed)	N
834	chr6	32685549	32685550	rs3916765	34716350	Lin WY	2021-10-29	Nat Commun	Genome-wide association study identifies susceptibility loci for acute myeloid leukemia.	Acute myeloid leukemia (normal cytogenetics)	3,041 European ancestry cases, 6,760 European ancestry controls	977 European ancestry cases, 3,728 European ancestry controls	6p21.32		rs3916765-G	NR	2E-10		1.72	[1.46-2.03]	Affymetrix, Illumina [6496414] (imputed)	N
834	chr6	32685549	32685550	rs3916765	22693455	Perry JR	2012-05-31	PLoS Genet	Stratifying type 2 diabetes cases by BMI identifies genetic risk variants in LAMA1 and enrichment for risk variants in lean compared to obese cases.	Type 2 diabetes	2,112 lean type 2 diabetes cases, 4,123 obese type 2 diabetes cases, 54,412 controls	2,881 lean type 2 diabetes cases, 8,702 obese type 2 diabetes cases, 18,957 controls	6p21.32	HLA-DQA2	rs3916765-A	0.12	1E-6	(Lean)	1.21	[1.12-1.31]	NR [NR]	N
834	chr6	32686628	32686629	rs9275667	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	XXbac-BPG254F23.7	rs9275667-T	NR	1E-15		0.0312755	[0.024-0.039] unit decrease	Affymetrix [323858] (imputed)	N
834	chr6	32686628	32686629	rs9275667	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	XXbac-BPG254F23.7	rs9275667-T	NR	6E-15		0.0304364	[0.023-0.038] unit decrease	Affymetrix [127266] (imputed)	N
834	chr6	32687972	32687973	rs9275698	21804548	Hirota T	2011-07-31	Nat Genet	Genome-wide association study identifies three new susceptibility loci for adult asthma in the Japanese population.	Asthma	1,532 Japanese ancestry cases, 3,304 Japanese ancestry controls	5,639 Japanese ancestry cases, 24,608 Japanese ancestry controls	6p21.32	HLA-DQA2	rs9275698-T	0.79	5E-12		1.18	[1.12-1.24]	Illumina [458847]	N
834	chr6	32688219	32688220	rs9275710	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	XXbac-BPG254F23.7	rs9275710-T	NR	1E-9		0.0190333	[0.013-0.025] unit decrease	Affymetrix [323858] (imputed)	N
834	chr6	32688219	32688220	rs9275710	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	XXbac-BPG254F23.7	rs9275710-T	NR	9E-9		0.018054	[0.012-0.024] unit decrease	Affymetrix [127266] (imputed)	N
834	chr6	32689885	32689886	rs117522574	32771030	Tangtanatakul P	2020-08-08	Arthritis Res Ther	Meta-analysis of genome-wide association study identifies FBN2 as a novel locus associated with systemic lupus erythematosus in Thai population.	Systemic lupus erythematosus	487 Thai cases, 1,606 Thai controls	405 Thai cases, 1,590 Thai controls	6p21.32	XXbac-BPG254F23.7, HLA-DQB3	rs117522574-G	0.19	3E-8		1.5082	[NR]	Illumina [421909] (imputed)	N
834	chr6	32691025	32691026	rs9275844	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	XXbac-BPG254F23.7	rs9275844-T	NR	2E-8		0.0217782	[0.014-0.029] unit increase	Affymetrix [323123] (imputed)	N
834	chr6	32693241	32693242	rs2858892	30657218	Park SY	2019-01-18	Clin Exp Allergy	Longitudinal analysis to better characterize Asthma-COPD Overlap Syndrome (ACOS): Findings from an adult asthma cohort in Korea (COREA).	Adult asthma	731 Korean ancestry cases, 5,915 Korean ancestry controls	NA	6p21.32	NR	rs2858892-?	NR	4E-7		1.34		NR [267429]	N
834	chr6	32694000	32694001	rs114803904	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs114803904-C	0.474	1E-24	(cAMP-specific 3',5'-cyclic phosphodiesterase 4D, PDE4D.5255.22.3)	0.29	[0.23-0.35] unit increase	Affymetrix [10572788] (imputed)	N
834	chr6	32695074	32695075	rs73732611	33558538	Gebresilase T	2021-02-08	Sci Rep	Replication of HLA class II locus association with susceptibility to podoconiosis in three Ethiopian ethnic groups.	Podoconiosis	1,137 Ethiopian ancestry cases, 1,152 Ethiopian ancestry controls	NA	6p21.32	HLA-DQB3	rs73732611-C	0.07	5E-9				Illumina [2201695]	N
834	chr6	32697784	32697785	rs2859113	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	NR	rs2859113-C	0.378328302013423	6E-8	(IGP59)	0.1817	[0.12-0.25] unit decrease	Illumina [~ 2500000] (imputed)	N
834	chr6	32700082	32700083	rs2858884	20711174	Hor H	2010-08-15	Nat Genet	Genome-wide association study identifies new HLA class II haplotypes strongly protective against narcolepsy.	Narcolepsy	562 European ancestry cases, 702 European ancestry controls	370 cases, 495 controls	6p21.32	HLA-DQA2	rs2858884-A	0.81	3E-8		1.79	[1.45-2.17]	Affymetrix [392949]	N
834	chr6	32701220	32701221	rs9276244	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	IgA levels	16,883 Icelandic ancestry individuals	2,151 Swedish ancestry individuals	6p21.32	HLA-DQA2	rs9276244-G	0.328	3E-14		0.09	NR SD units increase	Illumina [21568490] (imputed)	N
834	chr6	32701973	32701974	rs9276263	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p21.32	NR	rs9276263-?	NR	7E-16		0.1146	[0.087-0.142] unit increase	Illumina [at least 560000] (imputed)	N
834	chr6	32707294	32707295	rs9276370	32004448	Savage SA	2020-01-30	Am J Hum Genet	Genome-wide Association Study Identifies HLA-DPB1 as a Significant Risk Factor for Severe Aplastic Anemia.	Severe aplastic anemia	359 European ancestry cases, 1,396 European ancestry controls	175 European ancestry cases, 1,059 European ancestry controls	6p21.32	HLA-DQA2, HLA-DQB2	rs9276370-?	NR	5E-7		1.41	[1.23-1.62]	Illumina [688067]	N
834	chr6	32707294	32707295	rs9276370	24940741	Chang SW	2014-06-18	PLoS One	A genome-wide association study on chronic HBV infection and its clinical progression in male Han-Taiwanese.	Chronic hepatitis B infection	321 Chinese ancestry cases, 304 Chinese ancestry controls	1,302 Chinese ancestry cases, 761 Chinese ancestry controls	6p21.32	HLA-DQA2	rs9276370-T	0.076	2E-12		1.95	[1.62-2.34]	Illumina [456262]	N
834	chr6	32708364	32708364	rs11426605	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs11426605-T	0.966	3E-15	(conditional)	0.648	[0.54-0.76]	Illumina [11270530] (imputed)	N
834	chr6	32710220	32710221	rs9461806	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.32		rs9461806-C	0.595	2E-17				Affymetrix [10369434] (imputed)	N
834	chr6	32710220	32710221	rs9461806	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.32		rs9461806-C	0.595	1E-25				Affymetrix [10369434] (imputed)	N
834	chr6	32710406	32710407	rs115018313	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	6p21.32		rs115018313-C	NR	7E-33		0.284	[0.24-0.33] unit increase	Affymetrix, Illumina [25845091] (imputed)	N
834	chr6	32710854	32710855	rs9276423	26379185	Garcia-Etxebarria K	2015-09-17	PLoS One	No Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity.	Mild influenza (H1N1) infection	107 European ancestry mild cases, 549 European ancestry population controls	NA	6p21.32	HLA-DQA2	rs9276423-?	0.0	3E-8				Affymetrix [547296]	N
834	chr6	32711856	32711857	rs9276427	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first birth	542,901 European ancestry individuals	NA	6p21.32	HLA-DQA2	rs9276427-T	0.5217	3E-8		0.0532	[0.034-0.072] unit increase	NR [9744772] (imputed)	N
834	chr6	32711856	32711857	rs9276427	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQA2	rs9276427-C	NR	6E-9		0.0164173	[0.011-0.022] unit increase	Affymetrix [319769] (imputed)	N
834	chr6	32711856	32711857	rs9276427	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DQA2	rs9276427-C	NR	1E-8		0.0160937	[0.011-0.022] unit increase	Affymetrix [319769] (imputed)	N
834	chr6	32711856	32711857	rs9276427	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DQA2	rs9276427-C	NR	3E-8		0.0158296	[0.01-0.021] unit increase	Affymetrix [321169] (imputed)	N
834	chr6	32711856	32711857	rs9276427	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.32		rs9276427-C	0.49390500000000004	2E-10		1.0275491	[1.02-1.03]	Affymetrix, Illumina [9851866] (imputed)	N
834	chr6	32712008	32712009	rs41288889	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs41288889-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
834	chr6	32712665	32712666	rs9276434	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	6p21.32	HLA-DQA2	rs9276434-T	NR	4E-17		0.0479129	[0.037-0.059] unit decrease	Illumina [13520550] (imputed)	N
834	chr6	32713866	32713867	rs9276435	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cervical cancer	6,563 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs9276435-C	NR	2E-10		1.1631	NR	Affymetrix [7846216] (imputed)	N
834	chr6	32721420	32721421	rs2077046	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQB2	rs2077046-C	NR	2E-8		0.0159433	[0.01-0.021] unit increase	Affymetrix [319769] (imputed)	N
834	chr6	32725192	32725193	rs2301271	21408207	Chung SA	2011-03-03	PLoS Genet	Differential genetic associations for systemic lupus erythematosus based on anti-dsDNA autoantibody production.	Systemic lupus erythematosus	811 anti-dsDNA positive European ancestry cases, 906 anti-dsDNA negative European ancestry cases, 4,813 European ancestry controls	NA	6p21.32	HLA-DQA2	rs2301271-T	0.40	2E-12	(anti-dsDNA -)	1.47	[1.32-1.63]	Illumina [421318] (imputed)	N
834	chr6	32726273	32726274	rs9276578	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p21.32	HLA-DQB2	rs9276578-G	NR	2E-9		0.0231702	[0.016-0.031] unit decrease	Affymetrix [323858] (imputed)	N
834	chr6	32726802	32726803	rs1049110	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	HLA-DQA2, HLA-DQB2	rs1049110-C	0.346381764494382	2E-8	(IGP42)	0.1909	[0.12-0.26] unit increase	Illumina [~ 2500000] (imputed)	N
834	chr6	32726802	32726803	rs1049110	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	HLA-DQA2, HLA-DQB2	rs1049110-C	0.34601888034188	4E-8	(IGP2)	0.1853	[0.12-0.25] unit increase	Illumina [~ 2500000] (imputed)	N
834	chr6	32727208	32727209	rs9276580	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.32		rs9276580-T	0.46	8E-18				Affymetrix [10369434] (imputed)	N
834	chr6	32727324	32727325	rs7753017	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs7753017-A	0.237	5E-43		0.745	[0.7-0.79]	Illumina [11270530] (imputed)	N
834	chr6	32728641	32728642	rs2395258	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	6p21.32	HLA-DQB2	rs2395258-T	NR	6E-9		0.0205128	[0.014-0.027] unit increase	Illumina [13519193] (imputed)	N
834	chr6	32729057	32729058	rs2006163	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.32		rs2006163-A	0.462	4E-35				Affymetrix [10369434] (imputed)	N
834	chr6	32729733	32729734	rs2008560	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQB2	rs2008560-G	NR	3E-12		0.0196979	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
834	chr6	32729733	32729734	rs2008560	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DQB2	rs2008560-G	NR	2E-11		0.0189439	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
834	chr6	32729733	32729734	rs2008560	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DQB2	rs2008560-G	NR	1E-10		0.0183237	[0.013-0.024] unit increase	Affymetrix [321169] (imputed)	N
834	chr6	32729733	32729734	rs2008560	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling worry	372,869 European ancestry individuals	NA	6p21.32	C4B	rs2008560-C	0.496591	3E-8		5.56	unit decrease	NR [10847151] (imputed)	N
834	chr6	32730011	32730012	rs7453920	27244555	Li Y	2016-05-31	Nat Commun	Genome-wide association study identifies 8p21.3 associated with persistent hepatitis B virus infection among Chinese.	Persistent hepatitis B virus infection	1,251 Chinese ancestry persistently infected cases, 1,057 Chinese ancestry spontaneously recovered controls	3,905 Chinese ancestry persistently infected cases, 3,356 Chinese ancestry spontaneously recovered controls	6p21.32	HLA-DQB2	rs7453920-A		6E-6		2.0	[1.47-2.78]	Affymetrix, Illumina [up to 4494311] (imputed)	N
834	chr6	32730011	32730012	rs7453920	25802187	Jiang DK	2015-04-28	Hepatology	Genetic variants in five novel loci including CFB and CD40 predispose to chronic hepatitis B.	Chronic hepatitis B infection	2,514 Chinese ancestry cases, 1,130 Chinese ancestry controls	6,600 Chinese ancestry cases, 8,127 Chinese ancestry controls	6p21.32	HLA-DQB2	rs7453920-A	0.88	1E-60		2.0	[1.82-2.17]	Illumina [3680900] (imputed)	N
834	chr6	32730011	32730012	rs7453920	24940741	Chang SW	2014-06-18	PLoS One	A genome-wide association study on chronic HBV infection and its clinical progression in male Han-Taiwanese.	Chronic hepatitis B infection	321 Chinese ancestry cases, 304 Chinese ancestry controls	1,302 Chinese ancestry cases, 761 Chinese ancestry controls	6p21.32	HLA-DQB2	rs7453920-G	0.051	7E-15		2.31	[1.87-2.85]	Illumina [456262]	N
834	chr6	32730011	32730012	rs7453920	24162738	Hu Z	2013-10-27	Nat Genet	New loci associated with chronic hepatitis B virus infection in Han Chinese.	Hepatitis B	951 Han Chinese ancestry HBV carrier cases, 937 Han Chinese ancestry HBV cleared controls	4,230 Chinese ancestry HBV carrier cases, 3,051 Chinese ancestry HBV cleared controls, 2,622 Chinese ancestry controls	6p21.32	HLA-DQB2	rs7453920-G	0.87	5E-37		1.8868	[1.69-2.08]	Illumina [490610]	N
834	chr6	32730011	32730012	rs7453920	23760081	Kim YJ	2013-06-10	Hum Mol Genet	A genome-wide association study identified new variants associated with the risk of chronic hepatitis B.	Chronic hepatitis B infection	400 Korean ancestry cases, 1,000 Korean ancestry controls	971 Korean ancestry cases, 1,938 Korean ancestry controls	6p21.32	HLA-DQ	rs7453920-?	NR	7E-26		2.0	[1.72-2.27]	Illumina [719265]	N
834	chr6	32730011	32730012	rs7453920	23349640	Vijai J	2013-01-17	PLoS Genet	Susceptibility loci associated with specific and shared subtypes of lymphoid malignancies.	Lymphoma	275 Follicular non-Hodgkin's Lymphoma cases, 269 diffuse large B-cell non-Hodgkin's Lymphoma cases, 198 other non-Hodgkin's Lymphoma cases, 202 Hodgkin's Lymphoma cases, 4,044 controls	202 European ancestry Follicular non-Hodgkin's Lymphoma cases, 367 European ancestry diffuse large B-cell non-Hodgkin's Lymphoma cases, 577 European ancestry other non-Hodgkin's Lymphoma cases, 99 European ancestry Hodgkin's Lymphoma cases, 2,596 European ancestry controls	6p21.32	HLA-DQB2	rs7453920-?	NR	5E-6	(LYM)	1.19	[1.11-1.3]	Affymetrix [530583]	N
834	chr6	32730011	32730012	rs7453920	21750111	Mbarek H	2011-07-12	Hum Mol Genet	A genome-wide association study of chronic hepatitis B identified novel risk locus in a Japanese population.	Hepatitis B	458 Japanese ancestry cases, 2,056 Japanese ancestry controls	2,209 Japanese ancestry cases, 4,440 Japanese ancestry controls	6p21.32	HAL-DQB2	rs7453920-G	0.83	6E-28		1.81	[1.62-2.01]	Illumina [423627]	N
834	chr6	32730085	32730086	rs2051549	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DQB2	rs2051549-G	NR	4E-9		0.0181006	[0.012-0.024] unit increase	Affymetrix [323123] (imputed)	N
834	chr6	32730085	32730086	rs2051549	23053960	Lee YH	2012-10-07	Mol Biol Rep	Genome-wide pathway analysis of genome-wide association studies on systemic lupus erythematosus and rheumatoid arthritis.	Systemic lupus erythematosus	1,527 European ancestry cases, 3,421 European ancestry controls,	NA	6p21.32	HLA-DQA2	rs2051549-?	NR	3E-22				Illumina [737984]	N
834	chr6	32730939	32730940	rs2071550	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	6p21.32	SLC44A4, EHMT2, HLA-DQB2, STK19, CYP21A2, TNXB	rs2071550-?	NR	7E-6				Affymetrix, Illumina [18800000] (imputed)	N
834	chr6	32730939	32730940	rs2071550	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	6p21.32	SLC44A4, EHMT2, HLA-DQB2, STK19, CYP21A2, TNXB	rs2071550-?	NR	1E-9	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
834	chr6	32730939	32730940	rs2071550	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	6p21.32	SLC44A4, EHMT2, HLA-DQB2, STK19, CYP21A2, TNXB	rs2071550-?	NR	5E-8	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
834	chr6	32733627	32733628	rs33998906	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQB2	rs33998906-T	NR	5E-8		0.0304833	[0.02-0.041] unit increase	Affymetrix [319769] (imputed)	N
834	chr6	32733627	32733628	rs33998906	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DQB2	rs33998906-T	NR	2E-8		0.0314602	[0.021-0.042] unit increase	Affymetrix [319769] (imputed)	N
834	chr6	32734303	32734304	rs9276601	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQB2	rs9276601-G	NR	4E-8		0.0202269	[0.013-0.027] unit decrease	Affymetrix [319769] (imputed)	N
834	chr6	32736004	32736005	rs9296042	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Scarlet fever	6,812 European ancestry cases, 113,837 European ancestry controls	NA	6p21.32	NR	rs9296042-?	NR	3E-6		0.0873	[0.051-0.124] unit decrease	Illumina [at least 560000] (imputed)	N
834	chr6	32736694	32736695	rs9276606	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DQB2	rs9276606-T	NR	1E-9		0.021091	[0.014-0.028] unit decrease	Affymetrix [323858] (imputed)	N
834	chr6	32736694	32736695	rs9276606	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	HLA-DQB2	rs9276606-T	NR	2E-9		0.0208414	[0.014-0.028] unit decrease	Affymetrix [127266] (imputed)	N
834	chr6	32736694	32736695	rs9276606	23028341	Yang X	2012-09-13	PLoS Genet	Genome-wide association study for serum complement C3 and C4 levels in healthy Chinese subjects.	Complement C3 and C4 levels	1,999 Han Chinese ancestry male individuals	1,496 Han Chinese ancestry male individuals	6p21.32	HLA-DQB	rs9276606-T	0.15	3E-22	(Serum level of C4)	0.09	[0.070-0.110] g/L decrease	Illumina [1940245] (imputed)	N
834	chr6	32740410	32740411	rs2857212	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.32		rs2857212-A	0.635	2E-33				Affymetrix [10369434] (imputed)	N
834	chr6	32740410	32740411	rs2857212	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.32		rs2857212-A	0.635	2E-31				Affymetrix [10369434] (imputed)	N
834	chr6	32740410	32740411	rs2857212	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.32		rs2857212-A	0.635	2E-57				Affymetrix [10369434] (imputed)	N
834	chr6	32741005	32741006	rs2621419	33235445	Lee YJ	2020-11-17	Int J Chron Obstruct Pulmon Dis	A Genome-Wide Association Study in Early COPD: Identification of One Major Susceptibility Loci.	Early chronic obstructive pulmonary disease in never smokers	38 Korean ancestry cases, 1,778 Korean ancestry controls	NA	6p21.32	HLA-DQB2	rs2621419-?	NR	9E-6		0.68	NR	Affymetrix [345072]	N
834	chr6	32741867	32741868	rs2621416	23349640	Vijai J	2013-01-17	PLoS Genet	Susceptibility loci associated with specific and shared subtypes of lymphoid malignancies.	Lymphoma	275 Follicular non-Hodgkin's Lymphoma cases, 269 diffuse large B-cell non-Hodgkin's Lymphoma cases, 198 other non-Hodgkin's Lymphoma cases, 202 Hodgkin's Lymphoma cases, 4,044 controls	202 European ancestry Follicular non-Hodgkin's Lymphoma cases, 367 European ancestry diffuse large B-cell non-Hodgkin's Lymphoma cases, 577 European ancestry other non-Hodgkin's Lymphoma cases, 99 European ancestry Hodgkin's Lymphoma cases, 2,596 European ancestry controls	6p21.32	HLA-DQB2, TAP2	rs2621416-G	NR	2E-9	(FL)	1.57	[NR]	Affymetrix [530583]	N
834	chr6	32742094	32742095	rs9276610	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DQB2	rs9276610-A	NR	1E-9		0.0272626	[0.018-0.036] unit increase	Affymetrix [323123] (imputed)	N
834	chr6	32742826	32742827	rs12663317	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	6p21.32	NR	rs12663317-?	NR	6E-12				Affymetrix [~ 8270000] (imputed)	N
834	chr6	32744346	32744347	rs2857204	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	6p21.32	intergenic	rs2857204-T	0.327	9E-19		0.03378215	[0.026-0.041] unit decrease	Affymetrix [~ 2500000] (imputed)	N
834	chr6	32744439	32744440	rs28724893	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQB2	rs28724893-T	NR	2E-8		0.0157586	[0.01-0.021] unit decrease	Affymetrix [319769] (imputed)	N
834	chr6	32744439	32744440	rs28724893	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DQB2	rs28724893-T	NR	4E-11		0.0202278	[0.014-0.026] unit increase	Affymetrix [323123] (imputed)	N
834	chr6	32744833	32744834	rs9276643	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6p21.32	NR	rs9276643-C	0.6647	8E-12		1.0858942	[1.06-1.11]	Affymetrix [15688218] (imputed)	N
834	chr6	32744833	32744834	rs9276643	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	6p21.32	NR	rs9276643-?	NR	7E-105	(conditional)			Affymetrix [15688218] (imputed)	N
834	chr6	32745526	32745527	rs12661352	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs12661352-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
834	chr6	32746328	32746329	rs9501203	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.32		rs9501203-T	0.677	8E-12				Affymetrix [10369434] (imputed)	N
834	chr6	32748952	32748953	rs28986343	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous malignant melanoma	36,760 European ancestry cases, 375,188 European ancestry controls	NA	6p21.32	HLA-DQB2	rs28986343-C	0.952	2E-8		1.1531	NR	Affymetrix, Illumina [NR] (imputed)	N
834	chr6	32749488	32749489	rs574879686	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs574879686-A	0.018	1E-6		0.701	[0.56-0.84]	Illumina [11270530] (imputed)	N
834	chr6	32751415	32751416	rs7749543	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6p21.32	NR	rs7749543-G	0.6269	8E-10		1.0775862	[1.05-1.1]	Affymetrix [15688218] (imputed)	N
834	chr6	32751415	32751416	rs7749543	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	6p21.32	NR	rs7749543-?	NR	8E-115	(conditional)			Affymetrix [15688218] (imputed)	N
834	chr6	32751415	32751416	rs7749543	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p21.32	NR	rs7749543-?	NR	3E-6		0.0596	[0.035-0.085] unit increase	Illumina [at least 560000] (imputed)	N
834	chr6	32758393	32758394	rs7758736	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DOB	rs7758736-A	NR	1E-9		0.02222	[0.015-0.029] unit decrease	Affymetrix [321169] (imputed)	N
834	chr6	32761505	32761506	rs4318925	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DOB	rs4318925-T	NR	3E-9		0.0220014	[0.015-0.029] unit decrease	Affymetrix [321169] (imputed)	N
834	chr6	32763513	32763514	rs2857151	22446962	Onouchi Y	2012-03-25	Nat Genet	A genome-wide association study identifies three new risk loci for Kawasaki disease.	Kawasaki disease	428 Japanese ancestry cases, 3,379 Japanese ancestry controls	754 Japanese ancestry cases, 947 Japanese ancestry controls	6p21.32	HLA-DOB, HLA-DQB2	rs2857151-G	0.76	5E-11		1.47	[1.23-1.77]	Illumina [463793]	N
834	chr6	32764534	32764535	rs62398467	34011352	Schwarm C	2021-05-19	Orphanet J Rare Dis	Identification of two novel bullous pemphigoid- associated alleles, HLA-DQA1*05:05 and -DRB1*07:01, in Germans.	Bullous pemphigoid	438 German cases, 417 German controls	NA	6p21.32	HLA-DQB2, HLA-DOB	rs62398467-?	NR	7E-6		0.520158	[0.29-0.75] unit increase	Affymetrix [up to 386296] (imputed)	N
834	chr6	32765584	32765585	rs9276731	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DOB	rs9276731-T	NR	1E-15		0.0382096	[0.029-0.048] unit decrease	Affymetrix [323858] (imputed)	N
834	chr6	32765584	32765585	rs9276731	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	HLA-DOB	rs9276731-T	NR	3E-14		0.0364203	[0.027-0.046] unit decrease	Affymetrix [127266] (imputed)	N
834	chr6	32765584	32765585	rs9276731	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p21.32	HLA-DOB	rs9276731-T	NR	1E-8		0.0269325	[0.018-0.036] unit decrease	Affymetrix [323858] (imputed)	N
835	chr6	32769388	32769389	rs2621363	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6p21.32	NR	rs2621363-T	0.7091	8E-13		1.0481081	[1.04-1.06]	Affymetrix [15688218] (imputed)	N
835	chr6	32769388	32769389	rs2621363	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	6p21.32	NR	rs2621363-?	NR	7E-31	(conditional)			Affymetrix [15688218] (imputed)	N
835	chr6	32770478	32770479	rs151165576	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Treatment or medication use - insulin product (UKB data field 20003_1140883066)	4,469 European ancestry cases, 451,807 European ancestry controls	NA	6p21.32		rs151165576-A	0.003916	2E-15		1.58	[1.19-1.97] unit increase	NR [11842647] (imputed)	N
835	chr6	32771340	32771341	rs2621355	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.32	Intergenic	rs2621355-G	NR	5E-8		0.0202164	[0.013-0.028] unit increase	Illumina [13520550] (imputed)	N
835	chr6	32772855	32772856	rs9276757	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.32		rs9276757-A	0.772	8E-30				Affymetrix [10369434] (imputed)	N
835	chr6	32776920	32776921	rs1054684	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DOB	rs1054684-C	NR	2E-10		0.0303692	[0.021-0.04] unit increase	Affymetrix [323123] (imputed)	N
835	chr6	32776920	32776921	rs1054684	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.32	TAP2, HLA-DOB	rs1054684-C	0.115598	1E-11		0.03328803	[0.024-0.043] unit increase	Affymetrix [93095623] (imputed)	N
835	chr6	32776920	32776921	rs1054684	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	6p21.32	NR	rs1054684-C	0.114999	1E-8		0.0591419	[0.038-0.08] unit increase	Affymetrix [17914406] (imputed)	N
835	chr6	32777915	32777918	rs144227975	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs144227975-CTTT	0.665	4E-15	(conditional)	0.864	[0.83-0.9]	Illumina [11270530] (imputed)	N
835	chr6	32778421	32778422	rs9276796	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6p21.32	NR	rs9276796-G	0.3953	1E-20		1.058	[1.046-1.07]	Affymetrix [15688218] (imputed)	N
835	chr6	32778655	32778656	rs1812006	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.32	Intergenic	rs1812006-G	NR	1E-7	(women)	0.0361932	[0.023-0.05] unit decrease	Illumina [13520550] (imputed)	N
835	chr6	32780723	32780724	rs11244	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p21.32	HLA-DOB	rs11244-A	0.43	4E-11				Illumina [118177]	N
835	chr6	32781111	32781112	rs2071479	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	6p21.32	HLA-DOB	rs2071479-T	0.0273617407137154	7E-11		0.1473	[0.1-0.19] unit increase	NR [5035015] (imputed)	N
835	chr6	32781775	32781776	rs2856997	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DOB, TAP2	rs2856997-A	NR	9E-9		0.0165451	[0.011-0.022] unit decrease	Affymetrix [321016] (imputed)	N
835	chr6	32782581	32782582	rs2071474	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Strep throat	52,487 European ancestry cases, 22,017 European ancestry controls	NA	6p21.32	NR	rs2071474-?	NR	6E-6		0.027	[0.015-0.039] unit increase	Illumina [at least 560000] (imputed)	N
835	chr6	32782604	32782605	rs2071473	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.32		rs2071473-C	0.671	2E-23				Affymetrix [10369434] (imputed)	N
835	chr6	32782604	32782605	rs2071473	33106546	Johnson TA	2020-10-26	J Hum Genet	Association of an IGHV3-66 gene variant with Kawasaki disease.	Kawasaki disease	1,276 East Asian ancestry cases, 5,086 East Asian ancestry controls	2,152 East Asian ancestry cases, 2,751 East Asian ancestry controls	6p21.32	HLA-DOB	rs2071473-T	NR	7E-13		1.26	[1.18-1.34]	Affymetrix, Illumina [6265045] (imputed)	N
835	chr6	32783085	32783086	rs7383287	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in ever smokers	23,223 European ancestry cases,  16,964 European ancestry controls	NA	6p21.32	HLA-DOB	rs7383287-G	0.224903192	1E-10		1.1205634	[1.082275651-1.160205575]	Illumina [10439017] (imputed)	N
835	chr6	32783085	32783086	rs7383287	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	6p21.32	NR	rs7383287-A	NR	1E-7		1.07	[NR]	Illumina [7158791] (imputed)	N
835	chr6	32783404	32783405	rs1383258	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p21.32	HLA-DOB	rs1383258-A	0.04	2E-10	(EA)	3.68	[2.40-5.64]	Illumina [up to 547389]	N
835	chr6	32784782	32784783	rs2071469	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Chronic lymphocytic leukemia	764 White British ancestry cases, 272,079 White British ancestry controls	NA	6p21.32		rs2071469-?	NR	7E-6		0.775782	[0.67-0.89]	NR [663083]	N
835	chr6	32786916	32786917	rs3763354	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	6p21.32	Intergenic	rs3763354-G	NR	4E-12		0.0433868	[0.031-0.056] unit decrease	Illumina [13520550] (imputed)	N
835	chr6	32787035	32787036	rs1894407	24586183	Medici M	2014-02-27	PLoS Genet	Identification of novel genetic Loci associated with thyroid peroxidase antibodies and clinical thyroid disease.	Thyroid peroxidase antibody positivity	1,769 European ancestry cases, 16,528 European ancestry controls	922 European ancestry cases, 8,068 European ancestry controls	6p21.32	NR	rs1894407-C		1E-7		1.17	[1.11-1.24]	Affymetrix, Illumina [up to 3437411] (imputed)	N
835	chr6	32787174	32787175	rs9784858	26272072	Jiang X	2015-08-13	Rheumatology (Oxford)	An Immunochip-based interaction study of contrasting interaction effects with smoking in ACPA-positive versus ACPA-negative rheumatoid arthritis.	ACPA-positive rheumatoid arthritis (smoking interaction)	340 European ancestry never-smoker cases, 493 European ancestry ever-smoker cases, 746 European ancestry never-smoker controls, 994 European ancestry ever-smoker controls	187 European ancestry never-smoker cases, 421 European ancestry ever-smoker cases, 461 European ancestry never-smoker controls, 447 European ancestry ever-smoker controls	6p21.32	NR	rs9784858-?	NR	9E-12	(adjusted for HLA shared epitope)	1.4084507	[1.09-1.96]	Illumina [133648] (imputed)	N
835	chr6	32788711	32788712	rs2621322	30552173	Aterido A	2018-12-14	Ann Rheum Dis	Genetic variation at the glycosaminoglycan metabolism pathway contributes to the risk of psoriatic arthritis but not psoriasis.	Psoriatic arthritis	744 Spanish ancestry cases, 1,454 Spanish ancestry controls	1,430 cases, 1,417 controls	6p21.32	NR	rs2621322-?	NR	2E-8		5.6	[NR] z-score decrease	Illumina [1387382] (imputed)	N
835	chr6	32789399	32789400	rs151027268	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.32	NR	rs151027268-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
835	chr6	32793522	32793523	rs13501	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	TAP2	rs13501-A	NR	3E-9		0.0199818	[0.013-0.027] unit decrease	Affymetrix [323123] (imputed)	N
835	chr6	32795031	32795032	rs10484565	26272072	Jiang X	2015-08-13	Rheumatology (Oxford)	An Immunochip-based interaction study of contrasting interaction effects with smoking in ACPA-positive versus ACPA-negative rheumatoid arthritis.	ACPA-positive rheumatoid arthritis (smoking interaction)	340 European ancestry never-smoker cases, 493 European ancestry ever-smoker cases, 746 European ancestry never-smoker controls, 994 European ancestry ever-smoker controls	187 European ancestry never-smoker cases, 421 European ancestry ever-smoker cases, 461 European ancestry never-smoker controls, 447 European ancestry ever-smoker controls	6p21.32	NR	rs10484565-?	NR	7E-10	(adjusted for HLA shared epitope)	1.4285715	[1.09-2.13]	Illumina [133648] (imputed)	N
835	chr6	32796225	32796226	rs241453	32492067	Ruffieux H	2020-06-03	PLoS Comput Biol	A fully joint Bayesian quantitative trait locus mapping of human protein abundance in plasma.	Protein quantitative trait loci	376 European ancestry individuals	400 European ancestry individuals	6p21.32	NR	rs241453-?	NR	2E-6	(C4a)			Illumina [~ 4000000] (imputed)	N
835	chr6	32797114	32797115	rs241443	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	6p21.32	TAP2	rs241443-G	0.294917	2E-19		0.022992264	[0.018-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
835	chr6	32797772	32797773	rs2228391	26151496	Chen PL	2015-07-07	Nat Commun	Genetic determinants of antithyroid drug-induced agranulocytosis by human leukocyte antigen genotyping and genome-wide association study.	Thionamide-induced agranulocytosis in Graves' disease	21 East Asian ancestry cases with agranulocytosis, 662 East Asian ancestry cases without agranulocytosis	21 East Asian ancestry cases with agranulocytosis, 546 East Asian ancestry cases without agranulocytosis	6p21.32	HLA	rs2228391-C	0.108	4E-7	(trend)	3.32	[2.02-5.46] (allelic)	Affymetrix [522980]	N
835	chr6	32797875	32797876	rs241436	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6p21.32		rs241436-?	NR	7E-9		1.06498	[1.04-1.09]	NR [685523]	N
835	chr6	32797875	32797876	rs241436	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in lean individuals	up to 5,529 European ancestry male individuals, up to 9,753 European ancestry female individuals	NA	6p21.32	TAP2	rs241436-G	0.49	8E-6	(men)	0.089	[0.05-0.128] kg/m2 increase	Affymetrix, Illumina [at least 188473] (imputed)	N
835	chr6	32798730	32798731	rs1015166	29534301	Nishida N	2018-03-13	Hepatology	Key HLA-DRB1-DQB1 haplotypes and role of the BTNL2 gene for response to a hepatitis B vaccine.	Response to hepatitis B vaccine	107 Japanese ancestry low responder individuals, 351 Japanese ancestry intermediate responder individuals, 735 Japanese ancestry high responder individuals	NA	6p21.32	TAP2	rs1015166-?		1E-8		0.16	unit decrease	Affymetrix [427664]	N
835	chr6	32798730	32798731	rs1015166	25936594	Tomer Y	2015-04-27	J Autoimmun	Genome wide identification of new genes and pathways in patients with both autoimmune thyroiditis and type 1 diabetes.	Type 1 diabetes and autoimmune thyroid diseases	346 European ancestry cases, 727 European ancestry controls	185 European ancestry cases, 340 European ancestry controls	6p21.32	TAP2	rs1015166-T	NR	4E-22		2.1428		Illumina [514008]	N
835	chr6	32799844	32799845	rs60045856	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	6p21.32	NR	rs60045856-G	0.11004825178496	5E-12		0.0101193655	[0.0072-0.013] unit decrease	NR [NR]	N
835	chr6	32799844	32799845	rs60045856	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p21.32	NR	rs60045856-?	NR	3E-8		0.0829	[0.054-0.112] unit increase	Illumina [at least 560000] (imputed)	N
835	chr6	32802461	32802462	rs62397688	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	IgA nephropathy	1,180 East Asian ancestry cases, 899 East Asian ancestry controls	NA			rs62397688-A	NR	4E-6		0.58857	[0.34-0.84] unit decrease	Illumina [NR] (imputed)	N
835	chr6	32802806	32802807	rs4148872	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Diastolic blood pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	6p21.32	HLA	rs4148872-T	0.148057452	2E-7		0.2012	[0.13-0.28] unit increase	Affymetrix [~ 9800000] (imputed)	N
835	chr6	32803407	32803408	rs28724898	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p21.32	NR	rs28724898-?	NR	4E-13		0.1556	[0.11-0.2] unit decrease	Illumina [at least 560000] (imputed)	N
835	chr6	32803839	32803840	rs241429	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	TAP2	rs241429-A	NR	3E-8		0.0169285	[0.011-0.023] unit increase	Affymetrix [323123] (imputed)	N
835	chr6	32804069	32804070	rs241428	23028341	Yang X	2012-09-13	PLoS Genet	Genome-wide association study for serum complement C3 and C4 levels in healthy Chinese subjects.	Complement C3 and C4 levels	1,999 Han Chinese ancestry male individuals	1,496 Han Chinese ancestry male individuals	6p21.32	HLA-DQB	rs241428-G	0.08	9E-83	(Serum level of C4)	0.23	[0.21-0.25] g/L increase	Illumina [1940245] (imputed)	N
835	chr6	32804218	32804219	rs3819715	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (mother's age at death or mother's attained age)	up to 699,000 individuals	NA	6p21.32	NR	rs3819715-C		7E-6				Illumina [458525]	N
835	chr6	32804298	32804299	rs3819717	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (non-Lofgren's syndrome without extrapulmonary manifestations)	451 Swedish ancestry cases, 2,086 Swedish ancestry controls	NA	6p21.32	TAP2, PSMB9, HLA-DMB, HLA-DPB1	rs3819717-G	0.515	2E-6		1.434	[1.249-1.648]	Illumina [118177]	N
835	chr6	32804413	32804414	rs241427	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p21.32	TAP2	rs241427-G	0.797	4E-6		0.062	[0.035-0.089] unit decrease	Affymetrix, Illumina [7374092] (imputed)	N
835	chr6	32804569	32804570	rs3819720	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.32	NR	rs3819720-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
835	chr6	32804569	32804570	rs3819720	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs3819720-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
835	chr6	32804569	32804570	rs3819720	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p21.32	NR	rs3819720-?	NR	1E-12		0.1645	[0.12-0.21] unit decrease	Illumina [at least 560000] (imputed)	N
835	chr6	32804878	32804879	rs1871665	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.32		rs1871665-T	0.55322	1E-12		1.0307605	[1.02-1.04]	Affymetrix, Illumina [9851866] (imputed)	N
835	chr6	32805048	32805049	rs2239701	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	Composite immunoglobulin trait (IgA/IgG)	14,183 Icelandic ancestry individuals	2,146 Swedish ancestry individuals	6p21.32	TAP2	rs2239701-C	0.368	3E-10		0.08	NR SD units decrease	Illumina [21568490] (imputed)	N
835	chr6	32805306	32805307	rs2071466	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.32		rs2071466-C	0.704	1E-10				Affymetrix [10369434] (imputed)	N
835	chr6	32805306	32805307	rs2071466	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p21.32	TAP2	rs2071466-T		1E-24		0.024	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
835	chr6	32806390	32806391	rs4148870	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p21.32	TAP2	rs4148870-C	0.402	2E-6		0.053	[0.031-0.075] unit increase	Affymetrix, Illumina [7374092] (imputed)	N
835	chr6	32806552	32806553	rs74365910	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Ulcerative colitis (PheCode 555.2)	2,569 European ancestry cases, 453,779 European ancestry controls	NA	6p21.32		rs74365910-A	0.009189	9E-10		0.97	[0.66-1.28] unit increase	NR [11842647] (imputed)	N
835	chr6	32806552	32806553	rs74365910	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Treatment or medication use - levothyroxine sodium (UKB data field 20003_1141191044)	18,688 European ancestry cases, 437,588 European ancestry controls	NA	6p21.32		rs74365910-A	0.009068	2E-15		0.46	[0.35-0.57] unit increase	NR [11842647] (imputed)	N
835	chr6	32807489	32807490	rs114595701	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	6p21.32	NR	rs114595701-T	0.0925422107617213	2E-9		0.012502657	[0.0084-0.0166] unit decrease	NR [NR]	N
835	chr6	32807489	32807490	rs114595701	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	6p21.32	NR	rs114595701-T	0.0925422107617213	6E-9		0.013367118	[0.0089-0.0179] unit decrease	NR [NR]	N
835	chr6	32807489	32807490	rs114595701	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	6p21.32	NR	rs114595701-T	0.0925422107617213	2E-9		0.010604257	[0.0071-0.0141] unit decrease	NR [NR]	N
835	chr6	32808298	32808299	rs45506201	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	6p21.32	NR	rs45506201-A	0.0926176111889165	4E-9		0.015973978	[0.011-0.021] unit decrease	NR [NR]	N
835	chr6	32809847	32809848	rs9357155	21399633	Gharavi AG	2011-03-13	Nat Genet	Genome-wide association study identifies susceptibility loci for IgA nephropathy.	Nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls	712 Han Chinese ancestry cases, 748 Han Chinese ancestry controls, 1,238 European ancestry cases, 1,172 European ancestry controls	6p21.32	TAP2, TAP1, PSMB8, PSMB9	rs9357155-?	0.87 (EA)	2E-12		1.41	[NR]	Illumina [498322]	N
835	chr6	32811628	32811629	rs2071543	32912934	Li M	2020-09-10	J Am Soc Nephrol	Genome-Wide Meta-Analysis Identifies Three Novel Susceptibility Loci and Reveals Ethnic Heterogeneity of Genetic Susceptibility for IgA Nephropathy.	IgA nephropathy	2,628 Chinese ancestry cases, 11,563 Chinese ancestry controls	6,879 Han Chinese ancestry cases, 9,019 Han Chinese ancestry controls, 1,039 Italian ancestry cases, 1,289 Italian ancestry controls	6p21.32	PSMB8	rs2071543-G	0.8187836227622588	1E-6	(East Asian)	1.2505606	[1.14305470436016-1.36817776509077]	NR [3611808] (imputed)	N
835	chr6	32811628	32811629	rs2071543	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	6p21.32	PSMB9, TAP1, TAP2, PSMB8	rs2071543-G	0.80	2E-9	(East Asian)	1.41	[NR]	Illumina [> 1000000] (imputed)	N
835	chr6	32812527	32812528	rs2071463	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	6p21.32		rs2071463-?	NR	5E-8				Affymetrix [NR] (imputed)	N
835	chr6	32818029	32818030	rs113206908	32771030	Tangtanatakul P	2020-08-08	Arthritis Res Ther	Meta-analysis of genome-wide association study identifies FBN2 as a novel locus associated with systemic lupus erythematosus in Thai population.	Systemic lupus erythematosus	487 Thai cases, 1,606 Thai controls	405 Thai cases, 1,590 Thai controls	6p21.32	PSMB9	rs113206908-G	0.21	4E-7		1.4327	[NR]	Illumina [421909] (imputed)	N
835	chr6	32818677	32818678	rs2071538	32534018	Liu X	2020-06-10	Brain Behav Immun	Genetic factors underlying the bidirectional relationship between autoimmune and mental disorders - findings from a Danish population-based study.	Autoimmune traits	1,383 Danish ancestry cases, 62,656 Danish ancestry controls	NA	6p21.32	NR	rs2071538-A	0.24	8E-10		0.74	[0.67-0.82]	NR [7721839] (imputed)	N
835	chr6	32821446	32821447	rs2071536	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	PSMB9, TAP1	rs2071536-T	NR	5E-8		0.0260034	[0.017-0.035] unit decrease	Affymetrix [323123] (imputed)	N
835	chr6	32821446	32821447	rs2071536	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.32		rs2071536-T	0.111873	8E-10		1.0421276	[1.03-1.05]	Affymetrix, Illumina [9851866] (imputed)	N
835	chr6	32822243	32822244	rs17220241	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.32	HLA-Z, TAP2, PSMB9, PSMB8-AS1, XXbac-BPG246D15.9, TAP1, PSMB8	rs17220241-T	0.02156469	1E-21	(EA, Alpha-2-macroglobulin receptor-associated protein)	1.387	[1.11-1.66] unit increase	Affymetrix [509946]	N
835	chr6	32830012	32830013	rs7767288	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	6p21.32	PSMB9	rs7767288-A	0.4112	1E-11		0.02464776	[0.018-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
835	chr6	32832785	32832786	rs1055559	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	6p21.32	NR	rs1055559-?	NR	9E-7		0.079	[0.047-0.111] unit increase	Illumina [at least 560000] (imputed)	N
835	chr6	32832785	32832786	rs1055559	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	6p21.32	Intergenic	rs1055559-T	NR	4E-9		0.039613	[0.026-0.053] unit decrease	Illumina [13520550] (imputed)	N
835	chr6	32842974	32842975	rs6903433	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.32		rs6903433-C	0.87	7E-9				Affymetrix [10369434] (imputed)	N
835	chr6	32852646	32852647	rs2187689	22993228	Williams FM	2012-09-19	Ann Rheum Dis	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NA	6p21.32	PSMB9	rs2187689-C	0.08	3E-8		0.23	[0.15-0.31] unit increase	Affymetrix, Illumina [2552511] (imputed)	N
835	chr6	32853221	32853221	rs11459466	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	PPP1R2P1	rs11459466-GT	NR	4E-8		0.0204679	[0.013-0.028] unit increase	Affymetrix [323858] (imputed)	N
835	chr6	32853276	32853277	rs7767732	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.32		rs7767732-C	0.822	3E-21				Affymetrix [10369434] (imputed)	N
835	chr6	32854696	32854697	rs10046257	22993228	Williams FM	2012-09-19	Ann Rheum Dis	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NA	6p21.32	intergenic	rs10046257-A	0.10	3E-7		0.19	[0.12-0.26] unit increase	Affymetrix, Illumina [2552511] (imputed)	N
835	chr6	32855716	32855717	rs6457690	22993228	Williams FM	2012-09-19	Ann Rheum Dis	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NA	6p21.32	intergenic	rs6457690-A	0.10	9E-8		0.19	[0.12-0.26] unit increase	Affymetrix, Illumina [2552511] (imputed)	N
835	chr6	32856380	32856381	rs1029296	22993228	Williams FM	2012-09-19	Ann Rheum Dis	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NA	6p21.32	intergenic	rs1029296-C	0.10	9E-8		0.19	[0.12-0.26] unit increase	Affymetrix, Illumina [2552511] (imputed)	N
835	chr6	32856481	32856482	rs1029295	22993228	Williams FM	2012-09-19	Ann Rheum Dis	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NA	6p21.32	intergenic	rs1029295-C	0.10	5E-7		0.19	[0.12-0.26] unit increase	Affymetrix, Illumina [2552511] (imputed)	N
835	chr6	32856933	32856934	rs6936004	22993228	Williams FM	2012-09-19	Ann Rheum Dis	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NA	6p21.32	intergenic	rs6936004-C	0.10	1E-7		0.19	[0.12-0.26] unit increase	Affymetrix, Illumina [2552511] (imputed)	N
835	chr6	32857418	32857419	rs10214886	22993228	Williams FM	2012-09-19	Ann Rheum Dis	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NA	6p21.32	intergenic	rs10214886-A	0.10	2E-7		0.19	[0.12-0.26] unit increase	Affymetrix, Illumina [2552511] (imputed)	N
835	chr6	32857535	32857536	rs10214760	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6p21.32	TAP1	rs10214760-?	NR	3E-6	(dimethylglycine)	0.3002602	[0.17-0.43] unit decrease	Affymetrix [at least 2500000] (imputed)	N
835	chr6	32859711	32859712	rs7744666	22993228	Williams FM	2012-09-19	Ann Rheum Dis	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NA	6p21.32	intergenic	rs7744666-C	0.10	6E-8		0.2	[0.13-0.27] unit increase	Affymetrix, Illumina [2552511] (imputed)	N
835	chr6	32859747	32859748	rs11969002	22993228	Williams FM	2012-09-19	Ann Rheum Dis	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NA	6p21.32	intergenic	rs11969002-A	0.10	6E-8		0.2	[0.13-0.27] unit increase	Affymetrix, Illumina [2552511] (imputed)	N
835	chr6	32860751	32860752	rs9469300	22993228	Williams FM	2012-09-19	Ann Rheum Dis	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NA	6p21.32	intergenic	rs9469300-A	0.10	1E-7		0.19	[0.12-0.26] unit increase	Affymetrix, Illumina [2552511] (imputed)	N
835	chr6	32862606	32862607	rs3749982	22993228	Williams FM	2012-09-19	Ann Rheum Dis	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NA	6p21.32	intergenic	rs3749982-A	0.10	1E-7		0.19	[0.12-0.26] unit increase	Affymetrix, Illumina [2552511] (imputed)	N
835	chr6	32866094	32866095	rs9276916	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	Systemic lupus erythematosus	1,639 East Asian ancestry cases, 2,410 East Asian ancestry controls	NA			rs9276916-G	NR	2E-8		0.2244	[0.15-0.3] unit increase	Illumina [NR] (imputed)	N
835	chr6	32870056	32870057	rs3101942	26297903	Fabbri C	2015-08-20	Prog Neuropsychopharmacol Biol Psychiatry	Genetics of long-term treatment outcome in bipolar disorder.	Manic episodes in bipolar disorder	706 European ancestry cases	NA	6p21.32	LOC100294145	rs3101942-?	NR	7E-6		1.733	[1.365-2.201]	Affymetrix [329806] (imputed)	N
835	chr6	32872918	32872919	rs574560492	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs574560492-?	NR	5E-8				Affymetrix [~ 8270000] (imputed)	N
835	chr6	32888235	32888236	rs117231810	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.32	Intergenic	rs117231810-?		4E-6		1.06	[1.03-1.08]	Illumina [7645193] (imputed)	N
835	chr6	32888235	32888236	rs117231810	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.32	Intergenic	rs117231810-?		1E-6		1.69	[1.37-2.09]	Illumina [7645193] (imputed)	N
835	chr6	32891337	32891338	rs194679	32534018	Liu X	2020-06-10	Brain Behav Immun	Genetic factors underlying the bidirectional relationship between autoimmune and mental disorders - findings from a Danish population-based study.	Autoimmune traits	1,383 Danish ancestry cases, 62,656 Danish ancestry controls	NA	6p21.32	NR	rs194679-T	0.047	1E-9		1.62	[1.4-1.87]	NR [7721839] (imputed)	N
836	chr6	32900383	32900385	rs57390839	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	6p21.32	PSMB9, HLA-DMB	rs57390839-?	NR	2E-15		0.303437	[0.23-0.38] unit increase	Illumina [at least 950000] (imputed)	N
836	chr6	32900383	32900385	rs57390839	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p21.32	NR	rs57390839-?	NR	1E-7		0.0931	[0.058-0.128] unit increase	Illumina [at least 560000] (imputed)	N
836	chr6	32904038	32904039	rs77318243	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DMB	rs77318243-A	NR	3E-11		0.0352508	[0.025-0.046] unit decrease	Affymetrix [323858] (imputed)	N
836	chr6	32904038	32904039	rs77318243	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	HLA-DMB	rs77318243-A	NR	2E-10		0.0339654	[0.024-0.044] unit decrease	Affymetrix [127266] (imputed)	N
836	chr6	32907972	32907973	rs147725790	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6p21.32	NR	rs147725790-T	0.98229	2E-12		1.1804981	[1.13-1.23]	Affymetrix [15688218] (imputed)	N
836	chr6	32911329	32911330	rs116560929	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.32	NR	rs116560929-A	0.01045	3E-9	(FHL1)	0.008308	NR unit increase	Illumina [1671387] (imputed)	N
836	chr6	32911329	32911330	rs116560929	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.32	NR	rs116560929-A	0.01045	3E-10	(TAGLN)	0.4341	NR unit increase	Illumina [1671387] (imputed)	N
836	chr6	32911329	32911330	rs116560929	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.32	NR	rs116560929-A	0.01045	2E-8	(CNN2)	0.01914	NR unit increase	Illumina [1671387] (imputed)	N
836	chr6	32911813	32911814	rs2395296	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs2395296-A	NR	9E-8		1.089	[1.055-1.124]	Affymetrix [7846216] (imputed)	N
836	chr6	32913245	32913246	rs1480380	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p21.32	HLA-DMB, HLA-DMA	rs1480380-A	0.252	6E-23				Illumina [118177]	N
836	chr6	32913245	32913246	rs1480380	23453885	Smoller JW	2013-02-27	Lancet	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NA	6p21.32	NR	rs1480380-C	0.908	6E-7	(Modelling analysis)			NR [1252901] (imputed)	N
836	chr6	32913245	32913246	rs1480380	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.32	intergenic	rs1480380-T	0.0877	4E-39		3.05	[NR]	Illumina [242824]	N
836	chr6	32914725	32914726	rs73396800	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	6p21.32	NR	rs73396800-G	NR	4E-16		1.1904762	[NR]	Illumina [7158791] (imputed)	N
836	chr6	32915850	32915851	rs16871226	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	NR	rs16871226-G	0.0244821228239845	2E-6	(IGP67)	0.5182	[0.3-0.73] unit increase	Illumina [~ 2500000] (imputed)	N
836	chr6	32918455	32918456	rs12153970	26584805	Dorajoo R	2015-11-19	Genes Nutr	A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.	Plasma omega-3 polyunsaturated fatty acid levels (docosahexaenoic acid)	717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls	NA	6p21.32	NR	rs12153970-G	0.9496	4E-6		0.2241	[0.13-0.32] unit increase	Illumina [up to 1980188] (imputed)	N
836	chr6	32919574	32919575	rs146693865	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.32	NR	rs146693865-G	0.01045	3E-9	(FHL1)	0.008308	NR unit increase	Illumina [1671387] (imputed)	N
836	chr6	32919574	32919575	rs146693865	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.32	NR	rs146693865-G	0.01045	3E-10	(TAGLN)	0.4341	NR unit increase	Illumina [1671387] (imputed)	N
836	chr6	32919574	32919575	rs146693865	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.32	NR	rs146693865-G	0.01045	2E-8	(CNN2)	0.01914	NR unit increase	Illumina [1671387] (imputed)	N
836	chr6	32922458	32922459	rs9378127	30552173	Aterido A	2018-12-14	Ann Rheum Dis	Genetic variation at the glycosaminoglycan metabolism pathway contributes to the risk of psoriatic arthritis but not psoriasis.	Psoriatic arthritis	744 Spanish ancestry cases, 1,454 Spanish ancestry controls	1,430 cases, 1,417 controls	6p21.32	NR	rs9378127-?	NR	4E-7		5.07	[NR] z-score increase	Illumina [1387382] (imputed)	N
836	chr6	32924583	32924584	rs209474	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.32		rs209474-A	0.623	4E-15				Affymetrix [10369434] (imputed)	N
836	chr6	32924583	32924584	rs209474	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	6p21.32	HLA-DMA	rs209474-G	0.377123	1E-12		0.016615335	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
836	chr6	32924583	32924584	rs209474	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	6p21.32	HLA-DMA	rs209474-G	0.377106	6E-15		0.018046945	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
836	chr6	32924583	32924584	rs209474	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	6p21.32	NR	rs209474-A	0.624456	7E-9		0.0127924	[0.0085-0.0171] unit decrease	NR [NR]	N
836	chr6	32924583	32924584	rs209474	29121268	Amare AT	2017-11-09	JAMA Psychiatry	Association of Polygenic Score for Schizophrenia and HLA Antigen and Inflammation Genes With Response to Lithium in Bipolar Affective Disorder: A Genome-Wide Association Study.	Bipolar disorder lithium response (continuous) or schizophrenia	2,366 European ancestry lithium treated bipolar disorder cases, 220 Asian ancestry lithium treated bipolar disorder cases, 36,989 schizophrenia cases, controls (see Ripke et al 2014 PMID:25056061)	NA	6p21.32	HLA, DMA	rs209474-A		2E-8				NR [NR] (imputed)	N
836	chr6	32925691	32925692	rs580962	35215271	Almandil NB	2022-01-27	Pharmaceuticals (Basel)	Integration of Transcriptome and Exome Genotyping Identifies Significant Variants with Autism Spectrum Disorder.	Autism spectrum disorder	70 Arab ancestry cases, 132 Arab ancestry controls	NA	6p21.32	NA	rs580962-G	0.5852	6E-6		0.3383	[0.2105-0.5436]	Illumina [243345]	N
836	chr6	32928309	32928310	rs209476	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.32		rs209476-G	0.683	9E-16				Affymetrix [10369434] (imputed)	N
836	chr6	32928983	32928984	rs9276931	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	6p21.32	HLA-DMA	rs9276931-A	0.8852	5E-23		0.0292	[0.023-0.035] unit decrease	Affymetrix [18391927] (imputed)	N
836	chr6	32935147	32935148	rs115249787	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.32	NR	rs115249787-A	0.01045	3E-9	(FHL1)	0.008308	NR unit increase	Illumina [1671387] (imputed)	N
836	chr6	32935147	32935148	rs115249787	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.32	NR	rs115249787-A	0.01045	3E-10	(TAGLN)	0.4341	NR unit increase	Illumina [1671387] (imputed)	N
836	chr6	32935147	32935148	rs115249787	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.32	NR	rs115249787-A	0.01045	2E-8	(CNN2)	0.01914	NR unit increase	Illumina [1671387] (imputed)	N
836	chr6	32945529	32945530	rs3097644	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p21.32	BRD2	rs3097644-G		2E-8		0.02	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
836	chr6	32945698	32945701	rs3918142	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p21.32	NR	rs3918142-?	NR	4E-7		0.117	[0.072-0.162] unit decrease	Illumina [at least 560000] (imputed)	N
836	chr6	32946028	32946029	rs34530779	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.32	NR	rs34530779-A	0.01045	3E-9	(FHL1)	0.008308	NR unit increase	Illumina [1671387] (imputed)	N
836	chr6	32946028	32946029	rs34530779	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.32	NR	rs34530779-A	0.01045	3E-10	(TAGLN)	0.4341	NR unit increase	Illumina [1671387] (imputed)	N
836	chr6	32946028	32946029	rs34530779	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.32	NR	rs34530779-A	0.01045	2E-8	(CNN2)	0.01914	NR unit increase	Illumina [1671387] (imputed)	N
836	chr6	32946321	32946322	rs76088152	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p21.32	NR	rs76088152-?	NR	8E-9		0.2377	[0.16-0.32] unit decrease	Illumina [at least 560000] (imputed)	N
836	chr6	32948803	32948804	rs1049526	28008999	Ostrowski J	2016-12-23	Sci Rep	Genetic architecture differences between pediatric and adult-onset inflammatory bowel diseases in the Polish population.	Ulcerative colitis	269 Polish ancestry child cases, 259 Polish ancestry adult cases, 582 Polish ancestry controls	121 Polish ancestry child cases, 85 Polish ancestry adult cases, 352 Polish ancestry controls	6p21.32	BRD2	rs1049526-?		3E-7	(Adults)	2.697503	[1.87-3.90]	Illumina [2612357]	N
836	chr6	32948803	32948804	rs1049526	28008999	Ostrowski J	2016-12-23	Sci Rep	Genetic architecture differences between pediatric and adult-onset inflammatory bowel diseases in the Polish population.	Ulcerative colitis	269 Polish ancestry child cases, 259 Polish ancestry adult cases, 582 Polish ancestry controls	121 Polish ancestry child cases, 85 Polish ancestry adult cases, 352 Polish ancestry controls	6p21.32	BRD2	rs1049526-?		2E-8		2.3810558	[1.74-3.26]	Illumina [2612357]	N
836	chr6	32948803	32948804	rs1049526	28008999	Ostrowski J	2016-12-23	Sci Rep	Genetic architecture differences between pediatric and adult-onset inflammatory bowel diseases in the Polish population.	Inflammatory bowel disease	622 Polish ancestry child cases, 496 Polish ancestry adult cases, 582 Polish ancestry controls	192 Polish ancestry child cases, 185 Polish ancestry adult cases, 352 Polish ancestry controls	6p21.32	BRD2	rs1049526-?	NR	9E-10	(Adult)	2.659634	[1.93-3.66]	Illumina [2612357]	N
836	chr6	32948803	32948804	rs1049526	28008999	Ostrowski J	2016-12-23	Sci Rep	Genetic architecture differences between pediatric and adult-onset inflammatory bowel diseases in the Polish population.	Inflammatory bowel disease	622 Polish ancestry child cases, 496 Polish ancestry adult cases, 582 Polish ancestry controls	192 Polish ancestry child cases, 185 Polish ancestry adult cases, 352 Polish ancestry controls	6p21.32	BRD2	rs1049526-?	NR	5E-11		2.434453	[1.83-3.24]	Illumina [2612357]	N
836	chr6	32948803	32948804	rs1049526	28008999	Ostrowski J	2016-12-23	Sci Rep	Genetic architecture differences between pediatric and adult-onset inflammatory bowel diseases in the Polish population.	Inflammatory bowel disease	622 Polish ancestry child cases, 496 Polish ancestry adult cases, 582 Polish ancestry controls	192 Polish ancestry child cases, 185 Polish ancestry adult cases, 352 Polish ancestry controls	6p21.32	BRD2	rs1049526-?	NR	2E-8	(Children)	2.3504539	[1.73-3.19]	Illumina [2612357]	N
836	chr6	32948803	32948804	rs1049526	28008999	Ostrowski J	2016-12-23	Sci Rep	Genetic architecture differences between pediatric and adult-onset inflammatory bowel diseases in the Polish population.	Crohn's disease	353 Polish ancestry child cases, 237 Polish ancestry adult cases, 582 Polish ancestry controls	71 Polish ancestry child cases, 100 Polish ancestry adult cases, 352 Polish ancestry controls	6p21.32	BRD2	rs1049526-?	NR	5E-9		2.4428785	[1.79-3.33]	Illumina [2612357]	N
836	chr6	32948803	32948804	rs1049526	28008999	Ostrowski J	2016-12-23	Sci Rep	Genetic architecture differences between pediatric and adult-onset inflammatory bowel diseases in the Polish population.	Crohn's disease	353 Polish ancestry child cases, 237 Polish ancestry adult cases, 582 Polish ancestry controls	71 Polish ancestry child cases, 100 Polish ancestry adult cases, 352 Polish ancestry controls	6p21.32	BRD2	rs1049526-?	NR	3E-7	(Children)	2.4273632	[1.72-3.42]	Illumina [2612357]	N
836	chr6	32948803	32948804	rs1049526	28008999	Ostrowski J	2016-12-23	Sci Rep	Genetic architecture differences between pediatric and adult-onset inflammatory bowel diseases in the Polish population.	Crohn's disease	353 Polish ancestry child cases, 237 Polish ancestry adult cases, 582 Polish ancestry controls	71 Polish ancestry child cases, 100 Polish ancestry adult cases, 352 Polish ancestry controls	6p21.32	BRD2	rs1049526-?	NR	3E-6	(Adults)	2.530363	[1.73-3.70]	Illumina [2612357]	N
836	chr6	32953279	32953280	rs3097645	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	NR	rs3097645-C	0.87438328769575	7E-6	(IGP59)	0.2057	[0.12-0.3] unit increase	Illumina [~ 2500000] (imputed)	N
836	chr6	32953279	32953280	rs3097645	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	NR	rs3097645-C	0.874270331235955	2E-6	(IGP42)	0.2151	[0.13-0.3] unit decrease	Illumina [~ 2500000] (imputed)	N
836	chr6	32953279	32953280	rs3097645	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	NR	rs3097645-C	0.874157767431399	5E-6	(IGP2)	0.2092	[0.12-0.3] unit decrease	Illumina [~ 2500000] (imputed)	N
836	chr6	32953279	32953280	rs3097645	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	NR	rs3097645-C	0.873857556055831	6E-6	(IGP16)	0.2057	[0.12-0.29] unit decrease	Illumina [~ 2500000] (imputed)	N
836	chr6	32953279	32953280	rs3097645	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	NR	rs3097645-C	0.873550828800713	6E-6	(IGP61)	0.206	[0.12-0.3] unit increase	Illumina [~ 2500000] (imputed)	N
836	chr6	32953279	32953280	rs3097645	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	NR	rs3097645-C	0.873514573726542	3E-6	(IGP58)	0.2131	[0.12-0.3] unit increase	Illumina [~ 2500000] (imputed)	N
836	chr6	32953279	32953280	rs3097645	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	NR	rs3097645-C	0.872971129118433	6E-7	(IGP65)	0.2253	[0.14-0.31] unit increase	Illumina [~ 2500000] (imputed)	N
836	chr6	32960025	32960026	rs3130600	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	6p21.32	NR	rs3130600-?	NR	2E-6		0.079	[0.046-0.112] unit increase	Illumina [at least 560000] (imputed)	N
836	chr6	32960493	32960494	rs140545087	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	6p21.32	NR	rs140545087-?	NR	3E-10				Affymetrix [~ 8270000] (imputed)	N
836	chr6	32960493	32960494	rs140545087	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs140545087-?	NR	5E-9				Affymetrix [~ 8270000] (imputed)	N
836	chr6	32961360	32961361	rs9500927	21804548	Hirota T	2011-07-31	Nat Genet	Genome-wide association study identifies three new susceptibility loci for adult asthma in the Japanese population.	Asthma	1,532 Japanese ancestry cases, 3,304 Japanese ancestry controls	5,639 Japanese ancestry cases, 24,608 Japanese ancestry controls	6p21.32	HLA-DOA	rs9500927-T	0.26	4E-9		1.13	[1.09-1.18]	Illumina [458847]	N
836	chr6	32961620	32961621	rs172275	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	334,944 European ancestry, NR ancestry individuals	NA	6p21.32		rs172275-?	NR	5E-8				Affymetrix [NR] (imputed)	N
836	chr6	32962881	32962882	rs11757367	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.32		rs11757367-G	0.832	3E-15				Affymetrix [10369434] (imputed)	N
836	chr6	32966701	32966702	rs35520555	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.32		rs35520555-A	0.886	3E-8				Affymetrix [10369434] (imputed)	N
836	chr6	32972403	32972404	rs3128935	24024966	Teumer A	2013-08-14	J Clin Periodontol	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (CDC/AAP)	up to 3,915 European ancestry individuals	NA	6p21.32	HLA-DOA	rs3128935-T	0.97	9E-6	(Age 20-60 years)	2.28	[1.59-3.28]	Affymetrix, Illumina [up to 17585496] (imputed)	N
836	chr6	32973598	32973599	rs9276975	25758996	Pirastu N	2015-03-11	Eur J Hum Genet	Genome-wide association analysis on five isolated populations identifies variants of the HLA-DOA gene associated with white wine liking.	White wine liking	381 Carlantino (founder/genetic isolated) individuals, 744 Friuli Venezia Giulia (founder/genetic isolated) individuals, 1,115 Val Borbera (founder/genetic isolated) individuals	1,261 Erasmus Rucphen (founder/genetic isolated) individuals, 335 Silk Road individuals	6p21.32	HLA-DOA	rs9276975-T	0.15	2E-8		0.0539	[NR] unit increase	Illumina [9969492] (imputed)	N
836	chr6	32973598	32973599	rs9276975	25758996	Pirastu N	2015-03-11	Eur J Hum Genet	Genome-wide association analysis on five isolated populations identifies variants of the HLA-DOA gene associated with white wine liking.	Red wine liking	398 Carlantino (founder/genetic isolated) individuals, 751 Friuli Venezia Giulia (founder/genetic isolated) individuals, 1,122 Val Borbera (founder/genetic isolated) individuals	1,246 Erasmus Rucphen (founder/genetic isolated) individuals, 353 Silk Road individuals	6p21.32	HLA-DOA	rs9276975-T	0.15	8E-6		0.0419	[NR] unit increase	Illumina [6967159] (imputed)	N
836	chr6	32974933	32974934	rs378352	25802187	Jiang DK	2015-04-28	Hepatology	Genetic variants in five novel loci including CFB and CD40 predispose to chronic hepatitis B.	Chronic hepatitis B infection	2,514 Chinese ancestry cases, 1,130 Chinese ancestry controls	6,600 Chinese ancestry cases, 8,127 Chinese ancestry controls	6p21.32	HLA-DOA	rs378352-T	0.39	1E-23		1.26	[1.20-1.31]	Illumina [3680900] (imputed)	N
836	chr6	32975013	32975014	rs399604	22139419	Gieger C	2011-11-30	Nature	New gene functions in megakaryopoiesis and platelet formation.	Platelet count	38,891 European ancestry individuals, 1,661 Val Borbera (founder/genetic isolate) individuals, 521 Carlantino (founder/genetic isolate) individuals, 1,198 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,213 South Tyrolean (founder/genetic isolate) individuals, 890 Sorbian (founder/genetic isolate) individuals, 4,292 Sardinian (founder/genetic isolate) individuals	Up to 16,949 European ancestry individuals, 854 Cliento (founder/genetic isolate) individuals, 1,035 Talana (founder/genetic isolate) individuals	6p21.32	HLA-DOA	rs399604-C	NR	1E-10		2.346	[1.63-3.06] 10^9/l increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
836	chr6	32975510	32975511	rs2267647	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.32		rs2267647-A	0.331	4E-13				Affymetrix [10369434] (imputed)	N
836	chr6	32977419	32977420	rs381218	32534018	Liu X	2020-06-10	Brain Behav Immun	Genetic factors underlying the bidirectional relationship between autoimmune and mental disorders - findings from a Danish population-based study.	Autoimmune traits	1,383 Danish ancestry cases, 62,656 Danish ancestry controls	NA	6p21.32	NR	rs381218-T	0.29	1E-10		1.31	[1.21-1.42]	NR [7721839] (imputed)	N
836	chr6	32983747	32983748	rs11964504	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	6p21.32	NR	rs11964504-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
836	chr6	32988694	32988695	rs9296068	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	6p21.32	HLA-DOA	rs9296068-T	0.65	1E-8		1.05	[1.03-1.07]	Illumina [20370935] (imputed)	N
836	chr6	32989521	32989522	rs56042736	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	133,321 East Asian ancestry individuals	NA	6p21.32		rs56042736-G	0.049558	3E-17		0.0728205	[0.056-0.09] unit decrease	Illumina [13477433] (imputed)	N
836	chr6	33005433	33005434	rs150480104	32141793	Garman L	2020-03-06	Ocul Immunol Inflamm	Genome-Wide Association Study of Ocular Sarcoidosis Confirms HLA Associations and Implicates Barrier Function and Autoimmunity in African Americans.	Ocular sarcoidosis	260 African American cases, 1,551 African American controls	NA	6p21.32	NR	rs150480104-A	NR	8E-6		3.855	[2.13-6.98]	Illumina [13976150] (imputed)	N
836	chr6	33009322	33009323	rs78331658	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Measles	38,219 European ancestry cases, 47,279 European ancestry controls	NA	6p21.32	NR	rs78331658-?	NR	1E-7		1.7845	[1.12-2.45] unit increase	Illumina [at least 560000] (imputed)	N
836	chr6	33018956	33018957	rs9296069	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.32		rs9296069-C	0.749	5E-33				Affymetrix [10369434] (imputed)	N
836	chr6	33020351	33020352	rs3130582	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p21.32	HLA-DPA1	rs3130582-T	0.202102	3E-8	(-24 ms)	0.0369729	[0.023-0.051] unit increase	Affymetrix [10000000] (imputed)	N
836	chr6	33023149	33023150	rs9277176	29534301	Nishida N	2018-03-13	Hepatology	Key HLA-DRB1-DQB1 haplotypes and role of the BTNL2 gene for response to a hepatitis B vaccine.	Response to hepatitis B vaccine	107 Japanese ancestry low responder individuals, 351 Japanese ancestry intermediate responder individuals, 735 Japanese ancestry high responder individuals	NA	6p21.32	HLA-DPA1	rs9277176-?		1E-7		0.219	unit decrease	Affymetrix [427664]	N
836	chr6	33025952	33025953	rs6457709	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6p21.32		rs6457709-?	NR	2E-6		0.94528	[0.92-0.97]	NR [685523]	N
836	chr6	33025952	33025953	rs6457709	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Hepatitis B	1,425 European ancestry cases, 218,180 European ancestry controls	NA	6p21.32	NR	rs6457709-?	NR	8E-6		0.1819	[0.1-0.26] unit increase	Illumina [at least 560000] (imputed)	N
836	chr6	33026109	33026110	rs422544	32771030	Tangtanatakul P	2020-08-08	Arthritis Res Ther	Meta-analysis of genome-wide association study identifies FBN2 as a novel locus associated with systemic lupus erythematosus in Thai population.	Systemic lupus erythematosus	487 Thai cases, 1,606 Thai controls	405 Thai cases, 1,590 Thai controls	6p21.32	HLA-DOA, HLA-DPA1	rs422544-C	0.15	5E-8		0.6232	[NR]	Illumina [421909] (imputed)	N
836	chr6	33028637	33028638	rs9277332	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Keratinocyte cancer (MTAG)	at least 18,538 European ancestry cases, at least 340,302 European ancestry controls	NA	6p21.32	HLA-DPA1	rs9277332-G	0.744531	2E-9		1.06	[1.04-1.08]	Affymetrix [7600000] (imputed)	N
836	chr6	33028716	33028717	rs588997	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	6p21.32	NR	rs588997-A	NR	4E-6	(female)	0.1185	[0.068-0.169] unit decrease	Illumina [11133794] (imputed)	N
836	chr6	33029436	33029437	rs6457710	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	6p21.32	HLA-DPA1	rs6457710-G	0.268971	2E-11		0.017609773	[0.012-0.023] unit increase	Affymetrix [93095623] (imputed)	N
837	chr6	33031611	33031612	rs35449774	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.32	NR	rs35449774-?	NR	3E-11				Affymetrix [~ 8270000] (imputed)	N
837	chr6	33031611	33031612	rs35449774	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs35449774-?	NR	2E-16				Affymetrix [~ 8270000] (imputed)	N
837	chr6	33031611	33031612	rs35449774	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	6p21.32	HLA-DPA1, HLA-DPB1, HLA-DPB2	rs35449774-T	0.142188	7E-11		1.0714098	[1.05-1.09]	Affymetrix [8274727] (imputed)	N
837	chr6	33032864	33032865	rs1042901	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	6p21.32	HLA-DPA1	rs1042901-C	0.119144	1E-14		0.029356208	[0.022-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
837	chr6	33033021	33033022	rs3077	33736632	Zeng Z	2021-03-18	BMC Med Genomics	Genome-wide association study identifies new loci associated with risk of HBV infection and disease progression.	Persistent hepatitis B virus infection	587 Chinese ancestry persistent cases, 275 Chinese ancestry clearance controls	NA	6p21.32	HLA-DPA1	rs3077-A	0.4145	7E-9		0.5007	NR	Affymetrix [607153]	N
837	chr6	33033021	33033022	rs3077	25802187	Jiang DK	2015-04-28	Hepatology	Genetic variants in five novel loci including CFB and CD40 predispose to chronic hepatitis B.	Chronic hepatitis B infection	2,514 Chinese ancestry cases, 1,130 Chinese ancestry controls	6,600 Chinese ancestry cases, 8,127 Chinese ancestry controls	6p21.32	HLA-DPA1	rs3077-A	0.66	1E-53		1.45	[1.39-1.52]	Illumina [3680900] (imputed)	N
837	chr6	33033021	33033022	rs3077	23760081	Kim YJ	2013-06-10	Hum Mol Genet	A genome-wide association study identified new variants associated with the risk of chronic hepatitis B.	Chronic hepatitis B infection	400 Korean ancestry cases, 1,000 Korean ancestry controls	971 Korean ancestry cases, 1,938 Korean ancestry controls	6p21.32	HLA-DP	rs3077-?	NR	5E-39		1.89	[1.69-2.08]	Illumina [719265]	N
837	chr6	33033021	33033022	rs3077	22737229	Nishida N	2012-06-21	PLoS One	Genome-wide association study confirming association of HLA-DP with protection against chronic hepatitis B and viral clearance in Japanese and Korean.	Hepatitis B (viral clearance)	181 East Asian ancestry HBV carriers, 184 East Asian ancestry controls, 185 East Asian ancestry spontaneously HBV-resolved individuals	Up to 8,045 East Asian ancestry HBV carriers, up to 9,003 East Asian ancestry controls, up to 3,995 East Asian ancestry spontaneously HBV-resolved individuals	6p21.32	HLA-DPA1	rs3077-C	0.60	4E-45	(Protective effects against CHB)	1.82	[1.67-1.96]	Affymetrix [597789]	N
837	chr6	33033021	33033022	rs3077	22737229	Nishida N	2012-06-21	PLoS One	Genome-wide association study confirming association of HLA-DP with protection against chronic hepatitis B and viral clearance in Japanese and Korean.	Hepatitis B (viral clearance)	181 East Asian ancestry HBV carriers, 184 East Asian ancestry controls, 185 East Asian ancestry spontaneously HBV-resolved individuals	Up to 8,045 East Asian ancestry HBV carriers, up to 9,003 East Asian ancestry controls, up to 3,995 East Asian ancestry spontaneously HBV-resolved individuals	6p21.32	HLA-DPA1	rs3077-C	0.60	1E-9	(Clearance of HBV)	1.67	[1.43-2.0]	Affymetrix [597789]	N
837	chr6	33033021	33033022	rs3077	21750111	Mbarek H	2011-07-12	Hum Mol Genet	A genome-wide association study of chronic hepatitis B identified novel risk locus in a Japanese population.	Hepatitis B	458 Japanese ancestry cases, 2,056 Japanese ancestry controls	2,209 Japanese ancestry cases, 4,440 Japanese ancestry controls	6p21.32	HLA-DPA1	rs3077-G	0.60	2E-61		1.87	[1.73-2.01]	Illumina [423627]	N
837	chr6	33033419	33033420	rs79341334	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	6p21.32	NR	rs79341334-?	NR	4E-9	(MIC-A)	1.11932	[0.75-1.49] unit increase	Illumina [11901634] (imputed)	N
837	chr6	33033709	33033710	rs73739621	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (multivariate analysis)	477,968 European ancestry individuals	NA	6p21.32	HLA, DPA1	rs73739621-C	0.096	2E-10		0.05	[0.034-0.066] unit decrease	NR [NR] (imputed)	N
837	chr6	33033709	33033710	rs73739621	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (age of onset)	117,130 European ancestry individuals	NA	6p21.32	HLA-DPA1	rs73739621-C	0.096	4E-11		0.051	[0.035-0.067] unit decrease	NR [7647814] (imputed)	N
837	chr6	33033813	33033814	rs2301227	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	6p21.32	NR	rs2301227-A	NR	5E-6	(female)	0.1072	[0.061-0.153] unit decrease	Illumina [11133794] (imputed)	N
837	chr6	33033823	33033824	rs111789468	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	6p21.32	HLA-DPA1	rs111789468-?	NR	2E-13		1.092	[1.07-1.12]	Affymetrix [9000000] (imputed)	N
837	chr6	33033823	33033824	rs111789468	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	6p21.32	HLA-DPA1	rs111789468-T	NR	4E-6		1.082	[1.05-1.12]	Affymetrix [9000000] (imputed)	N
837	chr6	33034576	33034577	rs34596699	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	Systemic lupus erythematosus	1,639 East Asian ancestry cases, 2,410 East Asian ancestry controls	NA			rs34596699-T	NR	2E-8		0.2177	[0.14-0.29] unit increase	Illumina [NR] (imputed)	N
837	chr6	33035314	33035315	rs74292032	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6p21.32	HLA-DPA1	rs74292032-G	0.014974	1E-15		0.07435001	[0.056-0.093] unit decrease	Affymetrix [93095623] (imputed)	N
837	chr6	33039624	33039625	rs9277341	28029757	Merkel PA	2016-12-28	Arthritis Rheumatol	Identification of Functional and Expression Polymorphisms Associated With Risk for Antineutrophil Cytoplasmic Autoantibody-Associated Vasculitis.	Antineutrophil cytoplasmic antibody-associated vasculitis	1,015 European ancestry granulomatosis with polyangiitis cases, 206 European ancestry microscopic polyangiitis cases, 3,258 European ancestry controls.	541 European ancestry granulomatosis with polyangiitis cases, 30 European ancestry microscopic polyangiitis cases, 1,465 European ancestry controls.	6p21.32	HLA-DPA1	rs9277341-T	0.70	6E-71		2.44	2.21-2.69	Affymetrix [at least 333035] (imputed)	N
837	chr6	33039803	33039804	rs9277342	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	6p21.32	HLA-DPA1	rs9277342-T	0.21017	8E-10		0.017251292	[0.012-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
837	chr6	33040097	33040098	rs4345439	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Graves' disease	2,809 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	6p21.32		rs4345439-T	0.47048229	2E-67		0.48648387	[0.43-0.54] unit increase	Illumina [13429311] (imputed)	N
837	chr6	33041072	33041073	rs9357156	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Graves' disease	1,678 European ancestry cases, 456,942 European ancestry controls, 2,809 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	6p21.32		rs9357156-C	NR	1E-68		0.4396	[0.39-0.49] unit increase	Affymetrix, Illumina [25841587] (imputed)	N
837	chr6	33041733	33041734	rs2856830	30527956	Rhodes CJ	2018-12-05	Lancet Respir Med	Genetic determinants of risk in pulmonary arterial hypertension: international genome-wide association studies and meta-analysis.	Pulmonary arterial hypertension	2,085 European ancestry cases, 9,659 European ancestry controls	NA	6p21.32	HLA-DPA1, HLA-DPB1	rs2856830-C	0.12	8E-20		1.56	[1.42-1.71]	Illumina [~ 7727590] (imputed)	N
837	chr6	33042879	33042880	rs987870	21814517	Noguchi E	2011-07-21	PLoS Genet	Genome-wide association study identifies HLA-DP as a susceptibility gene for pediatric asthma in Asian populations.	Asthma	938 Japanese ancestry cases, 2,376 Japanese ancestry controls	1653 East Asian ancestry cases, 1453 East Asian ancestry controls	6p21.32	HLA, DPB1	rs987870-C	0.14	2E-10		1.4	[1.26-1.55]	Illumina [450326]	N
837	chr6	33042879	33042880	rs987870	21779181	Gorlova O	2011-07-14	PLoS Genet	Identification of novel genetic markers associated with clinical phenotypes of systemic sclerosis through a genome-wide association strategy.	Systemic sclerosis	2,296 European ancestry cases, 5,172 European ancestry controls	3,175 European ancestry cases, 4,210 European ancestry controls	6p21.32	HLA-DPA1, HLA-DPB1	rs987870-?	0.15	2E-20	(ATA positive)	2.09	[1.78-2.45]	Illumina [NR] (imputed)	N
837	chr6	33044014	33044015	rs115910061	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs115910061-T	0.059	5E-12		0.721	[0.63-0.81]	Illumina [11270530] (imputed)	N
837	chr6	33044986	33044987	rs6415133	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p21.32	NR	rs6415133-?	NR	6E-16		0.0994	[0.075-0.124] unit decrease	Illumina [at least 560000] (imputed)	N
837	chr6	33045254	33045255	rs2213309	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	6p21.32	NR	rs2213309-T	0.55	8E-7	(female)	0.1155	[0.07-0.161] unit increase	Illumina [11133794] (imputed)	N
837	chr6	33045499	33045500	rs2856816	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.32		rs2856816-T	0.908	5E-23				Affymetrix [10369434] (imputed)	N
837	chr6	33045499	33045500	rs2856816	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	6p21.32	HLA-DPB1, HLA-DPA1	rs2856816-C	0.092	2E-17		0.0523189	[0.04-0.064] unit decrease	Affymetrix [~ 2500000] (imputed)	N
837	chr6	33045499	33045500	rs2856816	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	6p21.32	HLA-DPB1, HLA-DPA1	rs2856816-C	0.092	7E-15		0.04810228	[0.036-0.06] unit decrease	Affymetrix [~ 2500000] (imputed)	N
837	chr6	33045697	33045698	rs7750458	27153935	Zhang CE	2016-05-06	J Dermatol	Variation at HLA-DPB1 is associated with dermatomyositis in Chinese population.	Dermatomyositis	127 Han Chinese ancestry case, 1,566 Han Chinese ancestry controls	NA	6p21.32	HLA-DPB1, HLA-DMB	rs7750458-A	0.09	1E-9		2.5	[1.80-3.44]	Illumina [812602]	N
837	chr6	33045698	33045699	rs56934772	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	6p21.32	HLA-DPB1	rs56934772-T	NR	5E-8		0.259632	[0.17-0.35] unit increase	Illumina [at least 950000] (imputed)	N
837	chr6	33045965	33045966	rs3135022	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	6p21.32	NR	rs3135022-A	NR	3E-6	(female)	0.1098	[0.064-0.156] unit decrease	Illumina [11133794] (imputed)	N
837	chr6	33046725	33046726	rs2021408	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.32		rs2021408-T	0.833	1E-17				Affymetrix [10369434] (imputed)	N
837	chr6	33046725	33046726	rs2021408	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.32		rs2021408-C	0.840557	3E-7		1.0296161	[1.02-1.04]	Affymetrix, Illumina [9851866] (imputed)	N
837	chr6	33046741	33046742	rs2856821	34450027	Boer CG	2021-08-24	Cell	Deciphering osteoarthritis genetics across 826,690 individuals from 9 populations.	Osteoarthritis of the hip or knee	88,842 European ancestry cases, 397,208 European ancestry controls, 899 Japanese ancestry cases, 3,396 Japanese ancestry controls	NA	6p21.32		rs2856821-T	0.7896	6E-9		1.0471791	[1.031089783-1.063519526]	Affymetrix, Illumina [NR] (imputed)	N
837	chr6	33046741	33046742	rs2856821	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Osteoarthritis	77,052 European ancestry cases, 378,169 European ancestry controls	NA	6p21.32	NR	rs2856821-T	0.79	1E-9		1.04	[1.03-1.06]	Affymetrix, Illumina [up to 17000000] (imputed)	N
837	chr6	33046751	33046752	rs3097670	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	6p21.32	HLA-DPA1	rs3097670-G	0.88	8E-12		1.064	[1.05-1.08]	Affymetrix, Illumina [8307659] (imputed)	N
837	chr6	33047030	33047031	rs1431403	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs1431403-T	0.39	1E-22		0.848	[0.81-0.88]	Illumina [11270530] (imputed)	N
837	chr6	33047465	33047466	rs3135024	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Aspartate aminotransferase levels	386,570 British ancestry individuals, 10,617 Asian or Asian British individuals, 7,426 Black or Black British individuals, 2,321 Chinese ancestry individuals	NA	6p21.32	HLA-DPB1	rs3135024-?	NR	8E-24		0.0034	[0.0028-0.004] unit increase	Affymetrix [21347608] (imputed)	N
837	chr6	33047465	33047466	rs3135024	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Alanine aminotransferase levels	387,859 British ancestry individuals, 10,635 Asian or Asian British individuals, 7,468 Black or Black British individuals, 2,338 Chinese ancestry individuals	NA	6p21.32	HLA-DPB1	rs3135024-?	NR	3E-10		0.0034	[0.0024-0.0044] unit increase	Affymetrix [21347608] (imputed)	N
837	chr6	33047465	33047466	rs3135024	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DPA1, HLA-DPB1, RPL32P1	rs3135024-C	NR	2E-8		0.0184048	[0.012-0.025] unit decrease	Affymetrix [321016] (imputed)	N
837	chr6	33047611	33047612	rs3097671	34197731	Li Q	2021-06-23	Am J Hum Genet	Whole-exome sequencing reveals common and rare variants in immunologic and neurological genes implicated in achalasia.	Idiopathic achalasia	280 Chinese Han ancestry cases, 1,121 Chinese Han ancestry controls	NA	6p21.32		rs3097671-C	0.102	3E-7		2.29	[1.67-3.15]	Illumina [476650] (imputed)	N
837	chr6	33048101	33048102	rs3130169	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs3130169-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
837	chr6	33048459	33048460	rs12722013	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	HLA-DPB1	rs12722013-C	0.049	1E-15	(C-C motif chemokine 21, CCL21.2516.57.3)	0.45	[0.33-0.57] unit increase	Affymetrix [10572788] (imputed)	N
837	chr6	33048465	33048466	rs1126511	34197731	Li Q	2021-06-23	Am J Hum Genet	Whole-exome sequencing reveals common and rare variants in immunologic and neurological genes implicated in achalasia.	Idiopathic achalasia	100 Chinese Han ancestry cases, 313 Chinese Han ancestry controls	230 Chinese Han ancestry cases, 1,760 Chinese Han ancestry controls	6p21.32		rs1126511-T	0.181	2E-9		1.83		Illumina [192329]	N
837	chr6	33048537	33048538	rs9277348	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hypothyroidism	1,114 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	6p21.32		rs9277348-C	0.428105722	8E-16		0.3692923	[0.28-0.46] unit increase	Illumina [13429045] (imputed)	N
837	chr6	33048605	33048606	rs1042133	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	6p21.32	HLA-DPB1	rs1042133-C	0.15836	8E-32		0.036145743	[0.03-0.042] unit increase	Affymetrix [93095623] (imputed)	N
837	chr6	33048605	33048606	rs1042133	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	6p21.32	HLA-DPB1	rs1042133-C	0.1567	3E-12		0.03465061	[0.025-0.044] unit increase	Affymetrix [~ 2500000] (imputed)	N
837	chr6	33048660	33048661	rs1042151	32004448	Savage SA	2020-01-30	Am J Hum Genet	Genome-wide Association Study Identifies HLA-DPB1 as a Significant Risk Factor for Severe Aplastic Anemia.	Severe aplastic anemia	359 European ancestry cases, 1,396 European ancestry controls	175 European ancestry cases, 1,059 European ancestry controls	6p21.32	HLA-DPB1	rs1042151-?	NR	2E-13		1.75	[1.50-2.03]	Illumina [688067]	N
837	chr6	33048660	33048661	rs1042151	23180272	Park BL	2012-11-21	Hum Genet	Genome-wide association study of aspirin-exacerbated respiratory disease in a Korean population.	Aspirin exacerbated respiratory disease in asthmatics	117 Korean ancestry cases, 685 Korean ancestry controls	142 Korean ancestry cases, 996 Korean ancestry controls	6p21.32	HLA-DPB1	rs1042151-G	0.083	5E-7		2.4	[1.68-3.42]	Illumina [430486]	N
837	chr6	33048688	33048688	rs141530233	28029757	Merkel PA	2016-12-28	Arthritis Rheumatol	Identification of Functional and Expression Polymorphisms Associated With Risk for Antineutrophil Cytoplasmic Autoantibody-Associated Vasculitis.	Antineutrophil cytoplasmic antibody-associated vasculitis	1,015 European ancestry granulomatosis with polyangiitis cases, 206 European ancestry microscopic polyangiitis cases, 3,258 European ancestry controls.	541 European ancestry granulomatosis with polyangiitis cases, 30 European ancestry microscopic polyangiitis cases, 1,465 European ancestry controls.	6p21.32	HLA-DPB1	rs141530233-?	0.7	1E-89		2.99	[2.69-3.33]	Affymetrix [at least 333035] (imputed)	N
837	chr6	33048693	33048694	rs9277356	31243853	Chung S	2019-06-27	J Viral Hepat	GWAS identifying HLA-DPB1 gene variants associated with responsiveness to hepatitis B virus vaccination in Koreans: Independent association of HLA-DPB1*04:02 possessing rs1042169 G - rs9277355 C - rs9277356 A.	Response to hepatitis B vaccine	1,760 Korean ancestry non-responder adults, 5,107 Korean ancestry responder adults	2,327 Korean ancestry adults, 49 Korean ancestry non-responder infants, 234 Korean ancestry responder infants	6p21.32	HLA-DPB1	rs9277356-A	0.4716	7E-31	(Adults)	1.474164	[1.38-1.574]	Affymetrix [345072]	N
837	chr6	33048920	33048921	rs7770370	32573827	Huang YH	2020-06-23	Aliment Pharmacol Ther	Large-scale genome-wide association study identifies HLA class II variants associated with chronic HBV infection: a study from Taiwan Biobank.	Chronic hepatitis B infection	1,810 East Asian cases, 9,002 East Asian seropositive controls	648 East Asian cases, 3,190 East Asian seropositive controls	6p21.32	NR	rs7770370-G	0.5739	3E-35		1.6393442	[1.52-1.79]	Affymetrix [583383]	N
837	chr6	33049273	33049274	rs2856827	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip	15 Asian ancestry cases, 13 European ancestry cases, 15 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	6p21.32	NR	rs2856827-?	NR	4E-6		3.87	[2.88-5.2]	Illumina [539000] (imputed)	N
837	chr6	33049662	33049663	rs9501251	28425483	Qiu F	2017-04-20	Nat Commun	A genome-wide association study identifies six novel risk loci for primary biliary cholangitis.	Primary biliary cholangitis	1,122 Han Chinese ancestry cases, 4,036 Han Chinese ancestry controls	907 Han Chinese ancestry cases, 2,127 Han Chinese ancestry controls	6p21.32	HLA-DPB1	rs9501251-G	0.044	2E-22		2.01	[1.76-2.32]	Illumina [776516]	N
837	chr6	33049725	33049726	rs7772134	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.32		rs7772134-G	0.899	5E-45				Affymetrix [10369434] (imputed)	N
837	chr6	33050278	33050279	rs9277378	27595289	Goyal RK	2016-09-05	Bone Marrow Transplant	Novel HLA-DP region susceptibility loci associated with severe acute GvHD.	Acute graft versus host disease in bone marrow transplantation (recipient effect)	291 European ancestry recipients with acute graft versus host disease, 288 European ancestry recipients without acute graft versus host disease	NA	6p21.32	HLA-DPB1	rs9277378-?		2E-9				Affymetrix [905761]	N
837	chr6	33050278	33050279	rs9277378	27470079	Li Z	2016-07-25	Lancet Oncol	Genetic risk of extranodal natural killer T-cell lymphoma: a genome-wide association study.	Extranodal natural killer T-cell lymphoma (nasal type)	189 East Asian ancestry cases, 957 East Asian ancestry controls	514 East Asian ancestry cases, 5,822 East Asian ancestry controls	6p21.32	HLA-DPB1	rs9277378-A	0.29	4E-19		1.84	[1.61-2.11]	Illumina [477644] (imputed)	N
837	chr6	33051896	33051896	rs142975055	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic hepatitis B infection	145 European ancestry cases, 351,740 European ancestry controls, 2,234 East Asian ancestry cases, 169,588 East Asian ancestry controls	NA	6p21.32		rs142975055-GAAATA	NR	1E-44		0.4385	[0.38-0.5] unit increase	Affymetrix, Illumina [20457334] (imputed)	N
837	chr6	33053351	33053352	rs9277464	29534301	Nishida N	2018-03-13	Hepatology	Key HLA-DRB1-DQB1 haplotypes and role of the BTNL2 gene for response to a hepatitis B vaccine.	Response to hepatitis B vaccine	107 Japanese ancestry low responder individuals, 351 Japanese ancestry intermediate responder individuals, 735 Japanese ancestry high responder individuals	NA	6p21.32	HLA-DPB1	rs9277464-?		7E-11		0.175	unit decrease	Affymetrix [427664]	N
837	chr6	33054860	33054861	rs9277535	27244555	Li Y	2016-05-31	Nat Commun	Genome-wide association study identifies 8p21.3 associated with persistent hepatitis B virus infection among Chinese.	Persistent hepatitis B virus infection	1,251 Chinese ancestry persistently infected cases, 1,057 Chinese ancestry spontaneously recovered controls	3,905 Chinese ancestry persistently infected cases, 3,356 Chinese ancestry spontaneously recovered controls	6p21.32	HLA-DPB1	rs9277535-A		4E-6		1.45	[1.23-1.69]	Affymetrix, Illumina [up to 4494311] (imputed)	N
837	chr6	33054860	33054861	rs9277535	25802187	Jiang DK	2015-04-28	Hepatology	Genetic variants in five novel loci including CFB and CD40 predispose to chronic hepatitis B.	Chronic hepatitis B infection	2,514 Chinese ancestry cases, 1,130 Chinese ancestry controls	6,600 Chinese ancestry cases, 8,127 Chinese ancestry controls	6p21.32	HLA-DPB1	rs9277535-A	0.58	1E-70		1.52	[1.45-1.59]	Illumina [3680900] (imputed)	N
837	chr6	33054860	33054861	rs9277535	24940741	Chang SW	2014-06-18	PLoS One	A genome-wide association study on chronic HBV infection and its clinical progression in male Han-Taiwanese.	Chronic hepatitis B infection	321 Chinese ancestry cases, 304 Chinese ancestry controls	1,302 Chinese ancestry cases, 761 Chinese ancestry controls	6p21.32	HLA-DPB1	rs9277535-G	0.251	5E-14		1.59	[1.41-1.79]	Illumina [456262]	N
837	chr6	33054860	33054861	rs9277535	23760081	Kim YJ	2013-06-10	Hum Mol Genet	A genome-wide association study identified new variants associated with the risk of chronic hepatitis B.	Chronic hepatitis B infection	400 Korean ancestry cases, 1,000 Korean ancestry controls	971 Korean ancestry cases, 1,938 Korean ancestry controls	6p21.32	HLA-DP	rs9277535-?	NR	4E-40		1.89	[1.72-2.08]	Illumina [719265]	N
837	chr6	33054860	33054861	rs9277535	22737229	Nishida N	2012-06-21	PLoS One	Genome-wide association study confirming association of HLA-DP with protection against chronic hepatitis B and viral clearance in Japanese and Korean.	Hepatitis B (viral clearance)	181 East Asian ancestry HBV carriers, 184 East Asian ancestry controls, 185 East Asian ancestry spontaneously HBV-resolved individuals	Up to 8,045 East Asian ancestry HBV carriers, up to 9,003 East Asian ancestry controls, up to 3,995 East Asian ancestry spontaneously HBV-resolved individuals	6p21.32	HLA-DPB1	rs9277535-G	0.57	2E-21	(Protective effects against CHB)	1.64	[1.47-1.82]	Affymetrix [597789]	N
837	chr6	33054860	33054861	rs9277535	22737229	Nishida N	2012-06-21	PLoS One	Genome-wide association study confirming association of HLA-DP with protection against chronic hepatitis B and viral clearance in Japanese and Korean.	Hepatitis B (viral clearance)	181 East Asian ancestry HBV carriers, 184 East Asian ancestry controls, 185 East Asian ancestry spontaneously HBV-resolved individuals	Up to 8,045 East Asian ancestry HBV carriers, up to 9,003 East Asian ancestry controls, up to 3,995 East Asian ancestry spontaneously HBV-resolved individuals	6p21.32	HLA-DPB1	rs9277535-G	0.57	2E-17	(Clearance of HBV)	1.52	[1.37-1.67]	Affymetrix [597789]	N
837	chr6	33054860	33054861	rs9277535	21764829	Png E	2011-07-15	Hum Mol Genet	A genome-wide association study of hepatitis B vaccine response in an Indonesian population reveals multiple independent risk variants in the HLA region.	Hepatitis B vaccine response	1,683 Indonesian ancestry individuals	1,931 Indonesian ancestry individuals	6p21.32	HLA-DPB1	rs9277535-?	NR	3E-12		1.39	[1.23-1.59]	Illumina [455508]	N
837	chr6	33054860	33054861	rs9277535	21750111	Mbarek H	2011-07-12	Hum Mol Genet	A genome-wide association study of chronic hepatitis B identified novel risk locus in a Japanese population.	Hepatitis B	458 Japanese ancestry cases, 2,056 Japanese ancestry controls	2,209 Japanese ancestry cases, 4,440 Japanese ancestry controls	6p21.32	HLA-DPB1	rs9277535-G	0.57	3E-54		1.77	[1.65-1.91]	Illumina [423627]	N
837	chr6	33054860	33054861	rs9277535	19349983	Kamatani Y	2009-04-06	Nat Genet	A genome-wide association study identifies variants in the HLA-DP locus associated with chronic hepatitis B in Asians.	Hepatitis B	179 Japanese ancestry cases, 934 Japanese ancestry controls	1,599 Japanese ancestry cases, 2,821 Japanese ancestry controls, 308 Thai ancestry cases, 546 Thai ancestry controls	6p21.32	HLA-DPB1	rs9277535-G		6E-39		1.75	[1.61-1.92]	Illumina [499544]	N
837	chr6	33055097	33055098	rs9501255	28077804	Ben-Avraham D	2017-01-10	Aging (Albany NY)	The complex genetics of gait speed: genome-wide meta-analysis approach.	Gait speed in old age	31,478 European ancestry older adults	2,588 European ancestry older adults	6p21.32	HLA-DPB1	rs9501255-T	NR	3E-7		0.0244	[0.015-0.034] m/sec increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
837	chr6	33055246	33055247	rs9277542	33736632	Zeng Z	2021-03-18	BMC Med Genomics	Genome-wide association study identifies new loci associated with risk of HBV infection and disease progression.	Persistent hepatitis B virus infection	587 Chinese ancestry persistent cases, 275 Chinese ancestry clearance controls	NA	6p21.32	HLA-DPB1	rs9277542-T	0.5347	2E-8		0.5353	NR	Affymetrix [607153]	N
837	chr6	33055246	33055247	rs9277542	33736632	Zeng Z	2021-03-18	BMC Med Genomics	Genome-wide association study identifies new loci associated with risk of HBV infection and disease progression.	Hepatitis B	460 Chinese ancestry cases, 169 Chinese ancestry controls	NA	6p21.32	HLA-DPB1	rs9277542-?	NR	2E-9				Affymetrix [607153]	N
837	chr6	33055418	33055419	rs9277549	29534301	Nishida N	2018-03-13	Hepatology	Key HLA-DRB1-DQB1 haplotypes and role of the BTNL2 gene for response to a hepatitis B vaccine.	Response to hepatitis B vaccine	107 Japanese ancestry low responder individuals, 351 Japanese ancestry intermediate responder individuals, 735 Japanese ancestry high responder individuals	NA	6p21.32	HLA-DPB2	rs9277549-?		6E-11		0.175	unit decrease	Affymetrix [427664]	N
837	chr6	33055500	33055501	rs9277552	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Osteoarthritis of the hip or knee	39,427 European ancestry cases, 378,169 European ancestry controls	NA	6p21.32	NR	rs9277552-C	0.79	2E-10		1.06	[1.04-1.08]	Affymetrix, Illumina [up to 17000000] (imputed)	N
837	chr6	33055500	33055501	rs9277552	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Knee osteoarthritis	24,955 European ancestry cases, 378,169 European ancestry controls	NA	6p21.32	NR	rs9277552-C	0.79	2E-8		1.07	[1.04-1.09]	Affymetrix, Illumina [up to 17000000] (imputed)	N
837	chr6	33055537	33055538	rs9277554	28076899	Taylor KE	2017-01-11	Arthritis Rheumatol	Genome-Wide Association Analysis Reveals Genetic Heterogeneity of Sjogren's Syndrome According to Ancestry.	Sjogren's syndrome	460 Asian ancestry cases, 1125 Asian ancestry controls	NA	6p21.32	HLA-DPB1	rs9277554-?		3E-7		1.65	[1.37-2.00]	Illumina [302688]	N
837	chr6	33055537	33055538	rs9277554	23740775	Xie G	2013-09-01	Arthritis Rheum	Association of granulomatosis with polyangiitis (Wegener's) with HLA-DPB1*04 and SEMA6A gene variants: evidence from genome-wide analysis.	Wegener's granulomatosis	459 European ancestry cases, 1,503 European ancestry controls	291 European ancestry cases, 317 European ancestry controls	6p21.32	HLA-DOA, HSD17B8, RING1, COL11A2, RXRB, HLA-DPB1*04, HLA-DPB1, HLA-DPB2	rs9277554-C	0.708	2E-50		4.17	[3.33-5.00]	Illumina [287802]	N
837	chr6	33055604	33055605	rs9277555	24586183	Medici M	2014-02-27	PLoS Genet	Identification of novel genetic Loci associated with thyroid peroxidase antibodies and clinical thyroid disease.	Thyroid peroxidase antibody levels	12,353 European ancestry individuals	8,159 European ancestry individuals	6p21.32	NR	rs9277555-G		6E-7		0.0199	[0.010-0.030] unit increase	Affymetrix, Illumina [up to 3437411] (imputed)	N
837	chr6	33055664	33055667	rs148969528	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p21.32	HLA-DPB1, HLA-DPA2	rs148969528-A	0.178395	3E-15		0.022868847	[0.017-0.029] unit increase	Affymetrix [93095623] (imputed)	N
837	chr6	33055664	33055667	rs148969528	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	6p21.32	HLA-DPB1, HLA-DPA2	rs148969528-A	0.178377	1E-17		0.024778191	[0.019-0.03] unit increase	Affymetrix [93095623] (imputed)	N
837	chr6	33056096	33056097	rs3128967	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6p21.32	NR	rs3128967-T	0.90959	2E-12		1.0504202	[1.04-1.06]	Affymetrix [15688218] (imputed)	N
837	chr6	33056761	33056762	rs9277562	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic hepatitis B infection	2,234 East Asian ancestry cases, 169,588 East Asian ancestry controls	NA	6p21.32		rs9277562-T	0.575524651	5E-45		0.44033504	[0.38-0.5] unit increase	Illumina [13428705] (imputed)	N
837	chr6	33058873	33058874	rs2179920	27501781	Shiraishi K	2016-08-09	Nat Commun	Association of variations in HLA class II and other loci with susceptibility to EGFR-mutated lung adenocarcinoma.	EGFR mutation-positive lung adenocarcinoma	663 Japanese ancestry cases, 4,367 Japanese ancestry controls	2,510 Japanese ancestry cases, 10,791 Japanese ancestry controls	6p21.32	HLA-DPB1	rs2179920-A	0.165	5E-17		1.36	[1.27-1.47]	Illumina [NR] (imputed)	N
837	chr6	33060117	33060118	rs2281388	31050781	Zhao SX	2019-05-03	JAMA Netw Open	Assessment of Molecular Subtypes in Thyrotoxic Periodic Paralysis and Graves Disease Among Chinese Han Adults: A Population-Based Genome-Wide Association Study.	Thyrotoxic hypokalemic periodic paralysis and Graves disease	171 Han Chinese ancestry cases, 2,160 Han Chinese ancestry controls	362 Han Chinese ancestry cases, 1,089 Han Chinese ancestry controls	6p21.32	HLA-DPB1, COL11A2	rs2281388-?	0.33	2E-18		1.74	[1.54-1.98]	Illumina [2752055] (imputed)	N
837	chr6	33060117	33060118	rs2281388	21841780	Chu X	2011-08-14	Nat Genet	A genome-wide association study identifies two new risk loci for Graves' disease.	Graves' disease	1,468 Chinese ancestry cases, 1,490 Chinese ancestry controls	3,994 Chinese ancestry cases, 3,510 Chinese ancestry controls	6p21.32	HLA, DPB1	rs2281388-T	0.32	2E-65		1.64	[1.55-1.74]	Illumina [486049]	N
837	chr6	33060821	33060822	rs6928954	20639394	Kang TW	2010-07-16	Hum Mol Genet	Genome-wide association of serum bilirubin levels in Korean population.	Bilirubin levels	8,841 Korean ancestry individuals	1,096 Korean ancestry individuals	6p21.32	intergenic	rs6928954-?	0.023	1E-6		0.075	[NR] bilirubin level increase	Affymetrix [1227049] (imputed)	N
837	chr6	33060869	33060870	rs2295119	32912934	Li M	2020-09-10	J Am Soc Nephrol	Genome-Wide Meta-Analysis Identifies Three Novel Susceptibility Loci and Reveals Ethnic Heterogeneity of Genetic Susceptibility for IgA Nephropathy.	IgA nephropathy	2,628 Chinese ancestry cases, 11,563 Chinese ancestry controls	6,879 Han Chinese ancestry cases, 9,019 Han Chinese ancestry controls, 1,039 Italian ancestry cases, 1,289 Italian ancestry controls	6p21.32	DPA1.DPB2	rs2295119-T	0.22960427086396265	3E-14	(East Asian)	1.3605813	[1.25664462393162-1.47311444258073]	NR [3611808] (imputed)	N
837	chr6	33060869	33060870	rs2295119	29784950	Sawai H	2018-05-21	Sci Rep	Genome-wide association study identified new susceptible genetic variants in HLA class I region for hepatitis B virus-related hepatocellular carcinoma.	Hepatocellular carcinoma in hepatitis B infection	473 Japanese ancestry chronic hepatitis and hepatocellular carcinoma cases, 516 Japanese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma	153 Japanese ancestry chronic hepatitis and hepatocellular carcinoma cases, 614 Japanese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma, 94 Chinese ancestry chronic hepatitis and hepatocellular carcinoma cases, 187 Chinese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma, 185 Thai ancestry chronic hepatitis and hepatocellular carcinoma cases, 198 Thai ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma	6p21.32	HLA	rs2295119-?	NR	6E-7	(Japanese)	1.59	[1.32-1.89]	Affymetrix [447830]	N
837	chr6	33060869	33060870	rs2295119	29784950	Sawai H	2018-05-21	Sci Rep	Genome-wide association study identified new susceptible genetic variants in HLA class I region for hepatitis B virus-related hepatocellular carcinoma.	Hepatocellular carcinoma in hepatitis B infection	473 Japanese ancestry chronic hepatitis and hepatocellular carcinoma cases, 516 Japanese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma	153 Japanese ancestry chronic hepatitis and hepatocellular carcinoma cases, 614 Japanese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma, 94 Chinese ancestry chronic hepatitis and hepatocellular carcinoma cases, 187 Chinese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma, 185 Thai ancestry chronic hepatitis and hepatocellular carcinoma cases, 198 Thai ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma	6p21.32	HLA	rs2295119-?	NR	5E-7		1.5873016	[1.32-1.89] Japanese	Affymetrix [447830]	N
837	chr6	33061228	33061229	rs3130189	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.32		rs3130189-T	0.829	9E-13				Affymetrix [10369434] (imputed)	N
837	chr6	33069566	33069567	rs3117245	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs3117245-C	NR	8E-9		1.174	[1.112-1.24]	Affymetrix [7846216] (imputed)	N
837	chr6	33069892	33069893	rs3117242	22808956	Lyons PA	2012-07-19	N Engl J Med	Genetically distinct subsets within ANCA-associated vasculitis.	Antineutrophil cytoplasmic antibody-associated vasculitis	914 European ancestry cases, 5,259 European ancestry controls	1,454 European ancestry cases, 1,666 European ancestry controls	6p21.32	HLA-DP, COL11A2	rs3117242-?	NR	1E-71		3.67	[NR]	Affymetrix [NR]	N
837	chr6	33071027	33071027	rs559242105	33143745	Andlauer TFM	2020-11-04	BMC Med	Treatment- and population-specific genetic risk factors for anti-drug antibodies against interferon-beta: a GWAS.	Neutralising antibody response to interferon beta therapy in multiple sclerosis (presence of antibodies; IFN?-1b subcutaneous)	up to 2,000 German and Swedish ancestry individuals	up to 757 German and Swedish ancestry individuals	6p21.32		rs559242105-TA	0.18	1E-8	(conditional on rs28366299)	0.85	[-0.56--1.14] unit decrease	Illumina [8550834] (imputed)	N
837	chr6	33071027	33071027	rs559242105	33143745	Andlauer TFM	2020-11-04	BMC Med	Treatment- and population-specific genetic risk factors for anti-drug antibodies against interferon-beta: a GWAS.	Neutralising antibody response to interferon beta therapy in multiple sclerosis (antibody titre; IFN?-1b subcutaneous)	up to 2,000 German and Swedish ancestry individuals	up to 757 German and Swedish ancestry individuals	6p21.32		rs559242105-TA	0.18	5E-10	(conditional on rs9272775)	0.28	[-0.18--0.38] unit decrease	Illumina [8550834] (imputed)	N
837	chr6	33071321	33071322	rs3128923	33736632	Zeng Z	2021-03-18	BMC Med Genomics	Genome-wide association study identifies new loci associated with risk of HBV infection and disease progression.	Hepatitis B	460 Chinese ancestry cases, 169 Chinese ancestry controls	NA	6p21.32	HLA-DPA2	rs3128923-?	NR	2E-6				Affymetrix [607153]	N
837	chr6	33072171	33072172	rs4282438	24097066	Li Y	2013-10-06	Nat Genet	A genome-wide association study in Han Chinese identifies a susceptibility locus for primary Sjogren's syndrome at 7q11.23.	Sjogren's syndrome	542 Han Chinese ancestry cases, 1,050 Han Chinese ancestry controls	1,303 Han Chinese ancestry cases, 2,727 Han Chinese ancestry controls	6p21.32	COL11A2, HLA-DPB1, HLA-DPA1	rs4282438-G	0.3546	9E-25		1.58	[1.45-1.72]	Affymetrix [556134]	N
837	chr6	33072171	33072172	rs4282438	23817570	Shi Y	2013-06-30	Nat Genet	A genome-wide association study identifies two new cervical cancer susceptibility loci at 4q12 and 17q12.	Cervical cancer	Up to 1,364 Han Chinese ancestry cases, up to 3,028 Han Chinese ancestry controls	4,167 Han Chinese ancestry cases, 7,196 Han Chinese ancestry controls	6p21.32	HLA-DPB2	rs4282438-?	0.56	5E-27	(Stringently Matched)	1.35	[1.27-1.41]	Affymetrix [563339]	N
837	chr6	33072239	33072240	rs2064479	31044621	Rimpela JM	2019-05-02	Blood Press	Genome-wide association study of white-coat effect in hypertensive patients.	White coat effect (clinic diastolic blood pressure minus ambulatory diastolic blood pressure)	206 Finnish ancestry individuals	NA	6p21.32	HLA-DPB1	rs2064479-A	0.26	5E-6		2.4	[1.42-3.38] unit increase	Illumina [629414]	N
837	chr6	33075442	33075443	rs910320	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.32	Intergenic	rs910320-?		8E-8		1.05	[1.03-1.07]	Illumina [7645193] (imputed)	N
837	chr6	33075665	33075666	rs3128930	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p21.32	HLA-DPA1	rs3128930-C	0.683	7E-6		0.053	[0.029-0.077] unit increase	Affymetrix, Illumina [7374092] (imputed)	N
837	chr6	33076089	33076090	rs872956	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.32	Intergenic	rs872956-?		8E-8		1.58	[1.34-1.86]	Illumina [7645193] (imputed)	N
837	chr6	33076151	33076154	rs57746686	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cervical cancer	967 East Asian ancestry cases, 60,614 East Asian ancestry controls	NA	6p21.32		rs57746686-G	0.159023897	1E-9		0.38955024	[0.26-0.52] unit increase	Illumina [13381745] (imputed)	N
837	chr6	33078162	33078163	rs3130218	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cervical cancer	6,563 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs3130218-A	NR	5E-9		1.16171	NR	Affymetrix [7846216] (imputed)	N
837	chr6	33082266	33082267	rs9277630	34246321	Fukunaga K	2021-07-10	Am J Hum Genet	Genome-wide association study reveals an association between the HLA-DPB1<sup>*</sup>02:01:02 allele and wheat-dependent exercise-induced anaphylaxis.	Wheat-dependent exercise-induced anaphylaxis	77 Japanese ancestry cases, 924 Japanese ancestry controls	91 Japanese ancestry cases, 435 Japanese ancestry controls	6p21.32		rs9277630-A	0.26	1E-11		3.53	[2.45-5.09]	Illumina [3891096] (imputed)	N
837	chr6	33082307	33082308	rs733208	24722205	Kwak SH	2014-04-17	Hum Mol Genet	A genome-wide association study on thyroid function and anti-thyroid peroxidase antibodies in Koreans.	Thyroid peroxidase antibody positivity	377 Korean ancestry cases, 3,019 Korean ancestry anti-TPO controls	108 Korean ancestry cases, 734 Korean ancestry controls	6p21.32	HLA-DPB2	rs733208-A	0.30	4E-7		1.435	[1.30-1.57]	Affymetrix [1418709] (imputed)	N
837	chr6	33082511	33082512	rs9277636	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	6p21.32	NR	rs9277636-G	0.153	3E-8		0.0105227	[0.0068-0.0143] unit increase	NR [~ 9732723] (imputed)	N
837	chr6	33085419	33085420	rs139394070	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	6p21.32		rs139394070-?	NR	5E-8				Affymetrix [NR] (imputed)	N
837	chr6	33086248	33086249	rs3117035	20031603	Marroni F	2009-08-01	Circ Cardiovasc Genet	A genome-wide association scan of RR and QT interval duration in 3 European genetically isolated populations: the EUROSPAN project.	RR interval (heart rate)	2,325 European ancestry individuals	NA	6p21.32	intergenic	rs3117035-A	0.48	1E-6		0.14	[0.08-0.20] unit decrease	Illumina [~ 318327]	N
837	chr6	33086447	33086448	rs1883414	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	6p21.32	HLA-DPB2, HLA-DPB1, HLA-DPA1	rs1883414-G	0.68	2E-11		1.22	[NR]	Illumina [> 1000000] (imputed)	N
837	chr6	33086447	33086448	rs1883414	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	6p21.32	HLA-DPB1, HLA-DPA1, HLA-DPB2	rs1883414-G	0.68	5E-7	(EA)	1.2	[NR]	Illumina [> 1000000] (imputed)	N
837	chr6	33086447	33086448	rs1883414	21399633	Gharavi AG	2011-03-13	Nat Genet	Genome-wide association study identifies susceptibility loci for IgA nephropathy.	Nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls	712 Han Chinese ancestry cases, 748 Han Chinese ancestry controls, 1,238 European ancestry cases, 1,172 European ancestry controls	6p21.32	HLA-DPA1, HLA-DPB1, HLA-DPB2	rs1883414-?	0.67 (EA)	5E-9		1.28	[NR]	Illumina [498322]	N
837	chr6	33088082	33088083	rs115311892	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein COL11A2	5,366 Icelandic ancestry individuals	NA	6p21.32		rs115311892-T	0.01149	1E-16		0.748771	[0.57-0.93] unit increase	Illumina [7506463] (imputed)	N
837	chr6	33089622	33089623	rs3117027	23482656	Chen D	2013-03-12	J Natl Cancer Inst	Genome-wide association study of susceptibility loci for cervical cancer.	Cervical cancer	1,034 European ancestry cases, 3,948 European ancestry controls	1,140 European ancestry cases, 1,058 European ancestry controls	6p21.32	HLA-DPB2	rs3117027-?	NR	1E-7		1.25	[1.15-1.36]	Illumina [632668]	N
837	chr6	33096706	33096707	rs117232140	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	6p21.32	HLA-DPB2	rs117232140-?	NR	7E-9		0.096564196	[0.064-0.129] unit decrease	Illumina [27896057] (imputed)	N
837	chr6	33096707	33096708	rs3117006	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma and attention deficit hyperactivity disorder	46,802 European ancestry asthma cases, 19,099 European ancestry attention deficit hyperactivity disorder cases, 381,675 European ancestry controls	NA	6p21.32	HLA-DPB2	rs3117006-?	NR	3E-8				Affymetrix [up to 8274727] (imputed)	N
837	chr6	33096707	33096708	rs3117006	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma (childhood onset)	9,676 European ancestry cases, 347,481 European ancestry controls	NA	6p21.32	HLA-DPB2	rs3117006-?	NR	2E-6		0.0766984	[0.044-0.109] unit increase	Affymetrix [8274727] (imputed)	N
837	chr6	33097422	33097423	rs3129270	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs3129270-T	NR	1E-7		1.1494253	[1.09-1.21]	Affymetrix [7846216] (imputed)	N
837	chr6	33097613	33097614	rs3129269	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	6p21.32	HLA-DPB2, HLA-DPB1, HLA-DPA1	rs3129269-C	NR	5E-7	(East Asian)	1.29	[NR]	Illumina [> 1000000] (imputed)	N
837	chr6	33098050	33098051	rs3116995	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.32	NR	rs3116995-?	NR	6E-9				Affymetrix [~ 8270000] (imputed)	N
837	chr6	33098343	33098344	rs6901830	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	6p21.32	HCG24	rs6901830-G	0.847121	1E-19		1.0788485	[1.0613158162383-1.09667081279089]	NR [9572556] (imputed)	N
837	chr6	33098568	33098569	rs9277768	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hashimoto thyroiditis	537 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	6p21.32		rs9277768-T	0.335380575	4E-10		0.4089919	[0.28-0.54] unit increase	Illumina [13428945] (imputed)	N
837	chr6	33098595	33098596	rs9277769	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.32		rs9277769-C	0.368	4E-12				Affymetrix [10369434] (imputed)	N
837	chr6	33098796	33098797	rs3116994	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.32		rs3116994-G	0.461	2E-9				Affymetrix [10369434] (imputed)	N
837	chr6	33098796	33098797	rs3116994	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs3116994-A	0.548	6E-12	(Collagen alpha-2(XI) chain, COL11A2.11278.4.3)	0.17	[0.13-0.21] unit increase	Affymetrix [10572788] (imputed)	N
837	chr6	33099537	33099538	rs3116989	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma onset (childhood vs adult)	13,962 European ancestry childhood onset cases, 14,873 European ancestry adult onset cases	31,002 European ancestry childhood onset cases, 16,297 European ancestry adult onset cases	6p21.32	COL11A2, HLA-DPB2	rs3116989-G	0.867	4E-6		1.073	[1.04-1.1]	Affymetrix [9000000] (imputed)	N
837	chr6	33099537	33099538	rs3116989	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	6p21.32	HLA-DPB2, COL11A2	rs3116989-?	NR	3E-17		1.096	[1.07-1.12]	Affymetrix [9000000] (imputed)	N
837	chr6	33099537	33099538	rs3116989	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	6p21.32	HLA-DPB2, COL11A2	rs3116989-G	NR	4E-14		1.078	[1.06-1.1]	Affymetrix [9000000] (imputed)	N
837	chr6	33104174	33104175	rs9366816	24940741	Chang SW	2014-06-18	PLoS One	A genome-wide association study on chronic HBV infection and its clinical progression in male Han-Taiwanese.	Chronic hepatitis B infection	321 Chinese ancestry cases, 304 Chinese ancestry controls	1,302 Chinese ancestry cases, 761 Chinese ancestry controls		HLA-DPA3	rs9366816-C	0.414	3E-10		1.43	[1.28-1.60]	Illumina [456262]	N
837	chr6	33104671	33104672	rs9277841	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6p21.32	HLA-DPA3	rs9277841-A	0.43233	1E-12		0.015864564	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
837	chr6	33124928	33124929	rs9277914	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	COL11A2	rs9277914-A	NR	8E-9		0.0222494	[0.015-0.03] unit increase	Affymetrix [321016] (imputed)	N
837	chr6	33124971	33124972	rs3130160	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.32	NR	rs3130160-?	NR	9E-11				Affymetrix [~ 8270000] (imputed)	N
837	chr6	33125858	33125859	rs3129205	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	COL11A2	rs3129205-T	0.348	3E-25	(Collagen alpha-2(XI) chain, COL11A2.11278.4.3)	0.27	[0.21-0.33] unit increase	Affymetrix [10572788] (imputed)	N
837	chr6	33132229	33132230	rs2229790	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	6p21.32	COL11A2	rs2229790-?	NR	3E-13		0.313	[0.23-0.4] unit decrease	Illumina [34656550] (imputed)	N
837	chr6	33136060	33136061	rs73741509	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.32		rs73741509-C	0.971	2E-14				Affymetrix [10369434] (imputed)	N
837	chr6	33136637	33136638	rs2855446	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6p21.32	Intergenic	rs2855446-A	0.6847	4E-9	(MTAG)	0.0083	[0.0056-0.011] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
837	chr6	33138497	33138498	rs2855440	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein COL11A2	5,366 Icelandic ancestry individuals	NA	6p21.32		rs2855440-T	0.3577	4E-31		0.229242	[0.19-0.27] unit decrease	Illumina [7506463] (imputed)	N
837	chr6	33139634	33139635	rs73741526	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.32		rs73741526-A	0.971	3E-13				Affymetrix [10369434] (imputed)	N
837	chr6	33141677	33141678	rs147927477	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Height	458,235 European ancestry individuals	NA	6p21.32		rs147927477-?	NR	9E-12		0.215425	[0.15-0.28] unit decrease	NR [9800000] (imputed)	N
837	chr6	33143947	33143948	rs2254287	18193043	Willer CJ	2008-01-13	Nat Genet	Newly identified loci that influence lipid concentrations and risk of coronary artery disease.	LDL cholesterol	8,589 European ancestry individuals	12,981 European ancestry individuals	6p21.32	B3GALT4	rs2254287-G	0.38	5E-8		1.91	[NR] mg/dl increase	Affymetrix, Illumina [~ 2261000] (imputed)	N
837	chr6	33144242	33144243	rs1799908	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	COL11A2	rs1799908-A	NR	5E-10		0.0178819	[0.012-0.024] unit decrease	Affymetrix [321016] (imputed)	N
837	chr6	33151879	33151880	rs41317102	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	6p21.32	COL11A2	rs41317102-C	NR	2E-7		0.247907	[0.15-0.34] unit increase	Illumina [at least 950000] (imputed)	N
837	chr6	33153527	33153528	rs9277934	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	COL11A2	rs9277934-T	NR	2E-10		0.0194123	[0.013-0.025] unit increase	Affymetrix [321016] (imputed)	N
837	chr6	33160216	33160217	rs144092339	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein COL11A2	5,366 Icelandic ancestry individuals	NA	6p21.32		rs144092339-T	0.02245	3E-20		0.580629	[0.46-0.7] unit increase	Illumina [7506463] (imputed)	N
837	chr6	33160216	33160217	rs144092339	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs144092339-T	0.037	1E-22	(Collagen alpha-2(XI) chain, COL11A2.11278.4.3)	0.63	[0.51-0.75] unit increase	Affymetrix [10572788] (imputed)	N
838	chr6	33161660	33161661	rs1050673	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.32	NR	rs1050673-G	0.64734375	4E-21	(COL11A2, 11278_4_3)	0.24454433	[0.19-0.29] unit increase	Illumina [> 1000000] (imputed)	N
838	chr6	33161660	33161661	rs1050673	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.32	NR	rs1050673-G	0.64734375	3E-9	(MICA, 2730_58_2)	0.15462574	[0.1-0.21] unit increase	Illumina [> 1000000] (imputed)	N
838	chr6	33169391	33169392	rs35690712	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs35690712-C	0.03	6E-22	(Collagen alpha-2(XI) chain, COL11A2.11278.4.3)	0.69	[0.55-0.83] unit increase	Affymetrix [10572788] (imputed)	N
838	chr6	33174782	33174783	rs421446	27244555	Li Y	2016-05-31	Nat Commun	Genome-wide association study identifies 8p21.3 associated with persistent hepatitis B virus infection among Chinese.	Persistent hepatitis B virus infection	1,251 Chinese ancestry persistently infected cases, 1,057 Chinese ancestry spontaneously recovered controls	3,905 Chinese ancestry persistently infected cases, 3,356 Chinese ancestry spontaneously recovered controls	6p21.32	MIR219A1	rs421446-G		3E-6		1.47	[1.25-1.72]	Affymetrix, Illumina [up to 4494311] (imputed)	N
838	chr6	33192412	33192413	rs146306986	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.32	TAPBP	rs146306986-C	0.99	3E-96	(TAPBP, 12378_71_3)	2.5151718	[2.29-2.74] unit decrease	Illumina [> 1000000] (imputed)	N
838	chr6	33192914	33192915	rs1705001	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	6p21.32	intergenic	rs1705001-A	0.2413	4E-11		0.0133	[0.0094-0.0172] unit increase	Affymetrix [18391927] (imputed)	N
838	chr6	33194476	33194477	rs411919	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	6p21.32	RING1	rs411919-G	0.73	8E-14				NR [> 9500000] (imputed)	N
838	chr6	33197614	33197615	rs77206300	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PDIA3	5,363 Icelandic ancestry individuals	NA	6p21.32		rs77206300-A	0.01105	6E-12		0.630021	[0.45-0.81] unit increase	Illumina [7506463] (imputed)	N
838	chr6	33204273	33204274	rs9277952	23817570	Shi Y	2013-06-30	Nat Genet	A genome-wide association study identifies two new cervical cancer susceptibility loci at 4q12 and 17q12.	Cervical cancer	Up to 1,364 Han Chinese ancestry cases, up to 3,028 Han Chinese ancestry controls	4,167 Han Chinese ancestry cases, 7,196 Han Chinese ancestry controls	6p21.32	intergenic	rs9277952-?	0.53	2E-9	(Matched)	1.18	[1.12-1.23]	Affymetrix [563339]	N
838	chr6	33239868	33239869	rs17215231	32424353	Zhang H	2020-05-18	Nat Genet	Genome-wide association study identifies 32 novel breast cancer susceptibility loci from overall and subtype-specific analyses.	Breast cancer (estrogen-receptor negative, progesterone-receptor negative, and human epidermal growth factor-receptor negative)	8,602 European ancestry triple negative cases, 9,414 European ancestry BRCA1 mutation carrier cases, 100,971 European ancestry controls	NA	6p21.32	NR	rs17215231-C	0.92	9E-13		1.1764705	[1.12-1.23]	Illumina [~ 9700000] (imputed)	N
838	chr6	33246517	33246518	rs3445	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	6p21.32	NR	rs3445-A	0.156	1E-9		0.00933656	[0.0063-0.0123] unit increase	NR [9732723] (imputed)	N
838	chr6	33250475	33250476	rs469064	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TAPBP	5,359 Icelandic ancestry individuals	NA	6p21.32		rs469064-C	0.4368	9E-113		0.401004	[0.37-0.44] unit increase	Illumina [7506463] (imputed)	N
838	chr6	33271952	33271953	rs144706539	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TAPBP	5,359 Icelandic ancestry individuals	NA	6p21.32		rs144706539-A	0.0122	6E-205		2.36433	[2.21-2.52] unit increase	Illumina [7506463] (imputed)	N
838	chr6	33271952	33271953	rs144706539	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	TAPBP	rs144706539-A	0.015	5E-94	(Tapasin, TAPBP.12378.71.3)	1.98	[1.78-2.18] unit increase	Affymetrix [10572788] (imputed)	N
838	chr6	33276769	33276770	rs9277972	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	6p21.32	NA	rs9277972-A	0.8069	5E-15		0.017	[0.013-0.021] unit decrease	NR [~ 27400000] (imputed)	N
838	chr6	33280308	33280309	rs2282851	34050765	Zhang L	2021-05-29	J Clin Endocrinol Metab	Joint genome-wide association analyses identified 49 novel loci for age at natural menopause.	Age at menopause	181,219 European ancestry individuals, 43,861 East Asian ancestry individuals	NA	6p21.32		rs2282851-T	0.28	1E-9		0.08	unit increase	Illumina [2093892] (imputed)	N
838	chr6	33280308	33280309	rs2282851	34050765	Zhang L	2021-05-29	J Clin Endocrinol Metab	Joint genome-wide association analyses identified 49 novel loci for age at natural menopause.	Age at menopause	181,219 European ancestry individuals	NA	6p21.32		rs2282851-T	0.28	2E-9		0.09	unit increase	Illumina [2398641] (imputed)	N
838	chr6	33282337	33282338	rs1061801	33128006	Timmins IR	2020-10-30	Commun Biol	Genome-wide association study of self-reported walking pace suggests beneficial effects of brisk walking on health and survival.	Walking pace	450,967 European ancestry individuals	NA	6p21.32	ZBTB22	rs1061801-G	NR	5E-8		0.00866168	[0.0055-0.0118] unit increase	Affymetrix [10061374] (imputed)	N
838	chr6	33282337	33282338	rs1061801	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (father's age at death)	309,383 European ancestry individuals	NA	6p21.32	NR	rs1061801-A	NR	3E-6		0.01574	[0.0091-0.0224] unit decrease	Illumina [541614]	N
838	chr6	33282337	33282338	rs1061801	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (father's age at death or father's attained age)	up to 699,000 European ancestry individuals	NA	6p21.32	NR	rs1061801-G		2E-6				Illumina [458865]	N
838	chr6	33282337	33282338	rs1061801	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6p21.32		rs1061801-A	0.187	1E-9		0.011	[0.0075-0.0145] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
838	chr6	33282337	33282338	rs1061801	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6p21.32	Intergenic	rs1061801-A	0.187	2E-10	(MTAG)	0.0108	[0.0075-0.0141] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
839	chr6	33294097	33294098	rs9277979	30120083	Ferguson A	2018-08-14	EBioMedicine	Genome-Wide Association Study of Circadian Rhythmicity in 71,500 UK Biobank Participants and Polygenic Association with Mood Instability.	Disrupted circadian rhythm (low relative amplitude of rest-activity cycles)	at least 2,700 European ancestry cases, at least 68,300 European ancestry controls	NA	6p21.32	DAXX	rs9277979-T	NR	2E-6		0.167	unit increase	Affymetrix [7969123] (imputed)	N
839	chr6	33306234	33306235	rs9277988	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6p21.32	NR	rs9277988-?	NR	3E-13				Affymetrix [~ 8270000] (imputed)	N
839	chr6	33306234	33306235	rs9277988	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	6p21.32	NR	rs9277988-C	0.1959	7E-14		0.023318363	[0.017-0.029] unit increase	Affymetrix [10549349] (imputed)	N
839	chr6	33306234	33306235	rs9277988	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	6p21.32	NR	rs9277988-C	0.188	7E-8		0.0104018	[0.0066-0.0142] unit decrease	NR [9732723] (imputed)	N
839	chr6	33308129	33308130	rs3130269	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs3130269-A	0.514	3E-63	(Tapasin, TAPBP.12378.71.3)	0.39	[0.35-0.43] unit decrease	Affymetrix [10572788] (imputed)	N
839	chr6	33309111	33309112	rs184722928	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	Systemic lupus erythematosus	1,639 East Asian ancestry cases, 2,410 East Asian ancestry controls	NA			rs184722928-A	NR	7E-6		0.6037	[0.34-0.87] unit decrease	Illumina [NR] (imputed)	N
839	chr6	33312454	33312455	rs9277992	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		6p21.32	DAXX	rs9277992-G	0.810445	6E-14		0.0132109	[0.0098-0.0167] unit decrease	Affymetrix [12370749]	N
839	chr6	33316449	33316450	rs187208364	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	6p21.32		rs187208364-?	NR	5E-8				Affymetrix [NR] (imputed)	N
839	chr6	33319814	33319815	rs9278004	34197731	Li Q	2021-06-23	Am J Hum Genet	Whole-exome sequencing reveals common and rare variants in immunologic and neurological genes implicated in achalasia.	Idiopathic achalasia	280 Chinese Han ancestry cases, 1,121 Chinese Han ancestry controls	NA	6p21.32		rs9278004-A	0.045	6E-6		2.9	[1.83-4.6]	Illumina [476650] (imputed)	N
839	chr6	33326698	33326699	rs9278020	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	6p21.32	NR	rs9278020-A	0.1012	4E-8				NR [9056863] (imputed)	N
839	chr6	33328703	33328704	rs114984535	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	6p21.32	DAXX, KIFC1	rs114984535-T	0.985403356	2E-6		1.2639532	[1.15-1.39]	Illumina [10439017] (imputed)	N
839	chr6	33345581	33345582	rs118109745	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	6p21.32		rs118109745-?	NR	7E-10		0.0811	unit decrease	NR [NR]	N
839	chr6	33355102	33355103	rs9278039	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.32		rs9278039-T	0.855	4E-12				Affymetrix [10369434] (imputed)	N
839	chr6	33385952	33385953	rs1705003	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	6p21.32		rs1705003-?	NR	5E-8				Affymetrix [NR] (imputed)	N
839	chr6	33385952	33385953	rs1705003	34197731	Li Q	2021-06-23	Am J Hum Genet	Whole-exome sequencing reveals common and rare variants in immunologic and neurological genes implicated in achalasia.	Idiopathic achalasia	100 Chinese Han ancestry cases, 313 Chinese Han ancestry controls	230 Chinese Han ancestry cases, 1,760 Chinese Han ancestry controls	6p21.32		rs1705003-G	0.048	3E-7		2.37		Illumina [192329]	N
839	chr6	33395198	33395199	rs9461856	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	6p21.32	SYNGAP1	rs9461856-A	NR	7E-12	(EA)	1.0775862	[1.06-1.1]	Illumina [6627481] (imputed)	N
839	chr6	33395198	33395199	rs9461856	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.32	BAK1, CUTA, DAXX, GGNBP1, KIFC1, LINC00336, MIR1234, MIR5004, MIR6834, MIR6873, PFDN6, PHF1, RGL2, SYNGAP1, TAPBP, WDR46, ZBTB22, ZBTB9	rs9461856-A		6E-12		1.07	[1.05-1.09]	Affymetrix, Illumina [NR]	N
839	chr6	33395198	33395199	rs9461856	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	6p21.32	NR	rs9461856-A	NR	4E-12		1.08	[NR]	Illumina [7158791] (imputed)	N
839	chr6	33395521	33395522	rs79926713	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		6p21.32	SYNGAP1	rs79926713-T	0.082	8E-6	(liability model)	0.13	[0.071-0.189] unit increase	NR [19725427] (imputed)	N
839	chr6	33411672	33411673	rs191549504	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Episodic memory (pairs-matching)	331,679 British ancestry individuals	NA	6p21.32		rs191549504-?	NR	2E-10				NR [7857346] (imputed)	N
839	chr6	33413006	33413007	rs3846852	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs3846852-A	0.016	4E-6		1.364	[1.23-1.5]	Illumina [11270530] (imputed)	N
840	chr6	33438220	33438221	rs151326043	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.32		rs151326043-G	0.981	7E-15				Affymetrix [10369434] (imputed)	N
840	chr6	33439780	33439781	rs62407927	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs62407927-?	NR	5E-9				Affymetrix [~ 8270000] (imputed)	N
840	chr6	33444073	33444074	rs9366821	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.32		rs9366821-T	0.588	4E-10				Affymetrix [10369434] (imputed)	N
840	chr6	33453110	33453111	rs34260955	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	6p21.32		rs34260955-C	0.783	2E-9		0.009	[0.0051-0.0129] unit decrease	NR [NR] (imputed)	N
840	chr6	33455573	33455574	rs9469434	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	6p21.32	NR	rs9469434-G	0.7149	4E-8		1.0362694	[1.02-1.05]	Affymetrix, Illumina [NR] (imputed)	N
840	chr6	33459419	33459420	rs11757081	33232274	Mohammadnejad A	2020-11-24	Aging (Albany NY)	Generalized correlation coefficient for genome-wide association analysis of cognitive ability in twins.	Cognitive function (generalized correlation coefficient)	278 Chinese ancestry dizygotic twins	NA	6p21.32	NR	rs11757081-?	NR	2E-7			[NR]	Illumina [5432814] (imputed)	N
840	chr6	33461778	33461779	rs35881303	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	6p21.32	NR	rs35881303-A	0.42101	4E-11		0.0135732	[0.0096-0.0176] unit increase	NR [NR]	N
840	chr6	33465481	33465482	rs9394152	21685187	Siedlinski M	2011-06-16	Thorax	Genome-wide association study of smoking behaviours in patients with COPD.	Age at smoking initiation in chronic obstructive pulmonary disease	3,397 European ancestry cases	NA	6p21.32	ZBTB9	rs9394152-T	0.41	7E-8		0.045	unit increase	Illumina [~ 6300000] (imputed)	N
840	chr6	33467769	33467770	rs210191	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	6p21.32	ZBTB9, BAK1	rs210191-G	0.986410501	9E-6		1.237917	[1.13-1.36]	Illumina [10439017] (imputed)	N
840	chr6	33476717	33476718	rs7747216	21685187	Siedlinski M	2011-06-16	Thorax	Genome-wide association study of smoking behaviours in patients with COPD.	Age at smoking initiation in chronic obstructive pulmonary disease	3,397 European ancestry cases	NA	6p21.31	intergenic	rs7747216-T	0.64	2E-7		0.044	unit increase	Illumina [~ 6300000] (imputed)	N
840	chr6	33478495	33478496	rs9296092	21685187	Siedlinski M	2011-06-16	Thorax	Genome-wide association study of smoking behaviours in patients with COPD.	Age at smoking initiation in chronic obstructive pulmonary disease	3,397 European ancestry cases	NA	6p21.31	intergenic	rs9296092-G	0.64	3E-7		0.044	unit increase	Illumina [~ 6300000] (imputed)	N
840	chr6	33479773	33479774	rs6907702	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.31		rs6907702-T	0.114	1E-14				Affymetrix [10369434] (imputed)	N
840	chr6	33480434	33480435	rs86715	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.31		rs86715-A	0.878	5E-33				Affymetrix [10369434] (imputed)	N
840	chr6	33480737	33480738	rs68191	32024964	Gonzalez-Serna D	2020-02-05	Sci Rep	A cross-disease meta-GWAS identifies four new susceptibility loci shared between systemic sclerosis and Crohn's disease.	Crohn's disease or systemic sclerosis	2,281 European ancestry systemic sclerosis cases, 1,988 European ancestry Crohn's disease cases, 7,388 European ancestry controls	3,453 European ancestry systemic sclerosis cases, 2,600 European ancestry Crohn's disease cases, 7,180 European ancestry controls	6p21.31	ZBTB9, BAK1	rs68191-C		1E-10			[NR]	Illumina [5994231] (imputed)	N
840	chr6	33482666	33482667	rs12190797	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mononucleosis	17,457 European ancestry cases, 68,446 European ancestry controls	NA	6p21.31	NR	rs12190797-?	NR	7E-6		0.1289	[0.073-0.185] unit decrease	Illumina [at least 560000] (imputed)	N
840	chr6	33486731	33486732	rs6457730	23817569	Hinds DA	2013-06-30	Nat Genet	A genome-wide association meta-analysis of self-reported allergy identifies shared and allergy-specific susceptibility loci.	Self-reported allergy	53,862 European ancestry individuals	NA	6p21.31	intergenic	rs6457730-A	0.0115	1E-6		0.275	[0.16-0.39] unit increase	Illumina [2400000] (imputed)	N
840	chr6	33486840	33486841	rs210183	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	15,171 African American or Afro-Caribbean and African ancestry individuals	NA	6p21.31	NR	rs210183-A	0.354619	4E-12		0.088419	[0.063-0.113] SD units decrease	Affymetrix, Illumina [36877391] (imputed)	N
840	chr6	33489881	33489882	rs9469457	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6p21.31	BAK1	rs9469457-A	0.021	9E-6	(Dinner intake, adj EER )	0.03	[NR] kcal increase	Illumina [899892]	N
840	chr6	33515519	33515520	rs210152	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	6p21.31	BAK1	rs210152-A	NR	9E-10	(EA)	1.094	[1.07-1.12]	Illumina [6627481] (imputed)	N
840	chr6	33515519	33515520	rs210152	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	6p21.31	NR	rs210152-A	NR	9E-10		1.09	[NR]	Illumina [7158791] (imputed)	N
840	chr6	33517030	33517031	rs210155	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	65,967 individuals	NA	6p21.31	NR	rs210155-?		3E-11				NR [8377093]	N
840	chr6	33517361	33517362	rs210156	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	6p21.31	ZBTB9, BAK1	rs210156-A		2E-9		0.148	unit decrease	Affymetrix [at least 2696785] (imputed)	N
840	chr6	33518999	33519000	rs210157	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Platelet count	108,208 Japanese ancestry individuals	NA	6p21.31	NR	rs210157-?	NR	4E-19		0.04244	[0.033-0.052] unit increase novel	Illumina [6108953] (imputed)	N
840	chr6	33524819	33524820	rs62405954	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Platelet count	8,850 African American individuals, 18,949 Hispanic/Latino individuals, 541 Asian ancestry individuals, 603 Native American ancestry individuals, 385 individuals	NA	6p21.31	NR	rs62405954-?	NR	5E-10		5.961929	[4.08-7.84] unit increase	Illumina [30743395] (imputed)	N
840	chr6	33527233	33527234	rs9469503	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6p21.31	NR	rs9469503-?	NR	6E-10				Affymetrix [~ 8270000] (imputed)	N
840	chr6	33530628	33530628	rs111678491	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	6p21.31		rs111678491-TTGTGTGTG	0.337316	2E-13		0.018111492	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
840	chr6	33534725	33534726	rs6910233	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Chagas cardiomyopathy in Tripanosoma cruzi seropositivity	207 Brazilian ancestry cases, 306 Brazilian ancestry controls	NA	6p21.31	NR	rs6910233-?	NR	4E-6				Affymetrix [5486770] (imputed)	N
840	chr6	33534879	33534880	rs6914422	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Forns index in high alcohol intake	33,437 British ancestry individuals	NA	6p21.31		rs6914422-?	0.2607	5E-19		0.004826	unit decrease	NR [6200000] (imputed)	N
840	chr6	33534879	33534880	rs6914422	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Fibrosis-4 index in high alcohol intake	33,324 British ancestry individuals	NA	6p21.31		rs6914422-?	0.2607	2E-15		0.01013	unit decrease	NR [6200000] (imputed)	N
840	chr6	33534879	33534880	rs6914422	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Aspartate aminotransferase platelet ratio index in high alcohol intake	33,330 British ancestry individuals	NA	6p21.31		rs6914422-?	0.2607	6E-14		0.01179	unit decrease	NR [6200000] (imputed)	N
840	chr6	33535465	33535466	rs210131	26920376	Wang Y	2016-02-26	Mult Scler	Genetic overlap between multiple sclerosis and several cardiovascular disease risk factors.	Multiple sclerosis and systolic blood pressure (pleiotropy)	230,204 individuals	NA	6p21.31	BAK1	rs210131-?	NR	2E-8			[1.1096-1.2146]	NR [2382073]	N
840	chr6	33537545	33537546	rs169738	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Schizophrenia (MTAG)	940,613 European ancestry individuals	NA	6p21.31		rs169738-?	NR	4E-11				NR [2625067]	N
840	chr6	33537545	33537546	rs169738	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Bipolar disorder (MTAG)	1,450,972 European ancestry individuals	NA	6p21.31		rs169738-?	NR	4E-8				NR [2625067]	N
840	chr6	33537545	33537546	rs169738	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Spleen volume	32,860 European ancestry individuals	NA	6p21.31	BAK1	rs169738-?	NR	4E-8		0.0387	NR L increase	Affymetrix [9390170] (imputed)	N
840	chr6	33537545	33537546	rs169738	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	67,764 individuals	NA	6p21.31	NR	rs169738-?		8E-12				NR [8377093]	N
840	chr6	33537545	33537546	rs169738	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Bipolar disorder (MTAG)	65,682 individuals	NA	6p21.31	NR	rs169738-?		1E-8				NR [520857]	N
840	chr6	33537545	33537546	rs169738	29066854	Lin BD	2017-11-01	J Hum Genet	2SNP heritability and effects of genetic variants for neutrophil-to-lymphocyte and platelet-to-lymphocyte ratio.	Platelet count	5,901 Dutch ancestry individuals	2,538 individuals	6p21.31	BAK1	rs169738-?	NR	3E-9		6.824	[4.57-9.08] unit decrease	Affymetrix, Illumina, Perlegen [6010458] (imputed)	N
840	chr6	33537545	33537546	rs169738	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.31	BAK1, CUTA, KIFC1, MIR5004, PHF1, SYNGAP1, ZBTB9	rs169738-?		8E-10		1.0638298	[1.04-1.09]	Affymetrix, Illumina [NR]	N
840	chr6	33538260	33538261	rs9380371	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Forns index in high alcohol intake	33,437 British ancestry individuals	NA	6p21.31		rs9380371-?	0.2569	5E-19		0.004868	unit decrease	NR [6200000] (imputed)	N
840	chr6	33538260	33538261	rs9380371	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Fibrosis-4 index in high alcohol intake	33,324 British ancestry individuals	NA	6p21.31		rs9380371-?	0.2569	1E-15		0.01026	unit decrease	NR [6200000] (imputed)	N
840	chr6	33538260	33538261	rs9380371	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Aspartate aminotransferase platelet ratio index in high alcohol intake	33,330 British ancestry individuals	NA	6p21.31		rs9380371-?	0.2569	8E-14		0.01186	unit decrease	NR [6200000] (imputed)	N
840	chr6	33540208	33540209	rs210134	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Platelet count	8,850 African American individuals, 18,949 Hispanic/Latino individuals, 541 Asian ancestry individuals, 603 Native American ancestry individuals, 385 individuals	NA	6p21.31	NR	rs210134-?	NR	2E-24		5.732625	[4.63-6.83] unit increase	Illumina [30743395] (imputed)	N
840	chr6	33540208	33540209	rs210134	26805783	Schick UM	2016-01-21	Am J Hum Genet	Genome-wide Association Study of Platelet Count Identifies Ancestry-Specific Loci in Hispanic/Latino Americans.	Platelet count	12,491 Hispanic/Latin American individuals	7,170 Hispanic/Latin American individuals	6p21.31	BAK1	rs210134-A	0.29	9E-9		4.94	[3.25-6.63] unit decrease	Illumina [2232944] (imputed)	N
840	chr6	33540208	33540209	rs210134	24292274	Speedy HE	2013-12-01	Nat Genet	A genome-wide association study identifies multiple susceptibility loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	1,739 European ancestry cases, 5,199 European ancestry controls	1,144 European ancestry cases, 3,151 European ancestry controls	6p21.31	BAK1	rs210134-G	0.68	3E-6		1.31	[NR]	Illumina [450000] (imputed)	N
840	chr6	33540208	33540209	rs210134	24026423	Shameer K	2013-09-12	Hum Genet	A genome- and phenome-wide association study to identify genetic variants influencing platelet count and volume and their pleiotropic effects.	Platelet count	13,582 European ancestry individuals	NA	6p21.31	BAK1	rs210134-A	NR	6E-8		4.66	[NR] unit increase	Illumina [476395]	N
840	chr6	33540208	33540209	rs210134	23263863	Li J	2012-12-20	Hum Mol Genet	GWAS of blood cell traits identifies novel associated loci and epistatic interactions in Caucasian and African-American children.	Platelet count	7,943 African American children, 6,234 European ancestry children	NA	6p21.31	BAK1	rs210134-A	0.2675	2E-8	(AA)	8.923	[5.82-12.02] unit decrease	Illumina [544917]	N
840	chr6	33540208	33540209	rs210134	22423221	Qayyum R	2012-03-08	PLoS Genet	A meta-analysis and genome-wide association study of platelet count and mean platelet volume in african americans.	Platelet count	16,388 African American individuals	NA	6p21.31	BAK1	rs210134-G	0.286	2E-15		6.16	[4.63-7.69] 10^9 L decrease	Affymetrix, Illumina [~ 2200000] (imputed)	N
840	chr6	33540208	33540209	rs210134	22139419	Gieger C	2011-11-30	Nature	New gene functions in megakaryopoiesis and platelet formation.	Platelet count	38,891 European ancestry individuals, 1,661 Val Borbera (founder/genetic isolate) individuals, 521 Carlantino (founder/genetic isolate) individuals, 1,198 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,213 South Tyrolean (founder/genetic isolate) individuals, 890 Sorbian (founder/genetic isolate) individuals, 4,292 Sardinian (founder/genetic isolate) individuals	Up to 16,949 European ancestry individuals, 854 Cliento (founder/genetic isolate) individuals, 1,035 Talana (founder/genetic isolate) individuals	6p21.31	BAK1	rs210134-G	NR	7E-36		4.957	[4.18-5.73] 10^9/l increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
840	chr6	33540691	33540692	rs210135	19820697	Soranzo N	2009-10-11	Nat Genet	A genome-wide meta-analysis identifies 22 loci associated with eight hematological parameters in the HaemGen consortium.	Hematological parameters	4,627 European ancestry individuals	9,316 European ancestry individuals	6p21.31	BAK1	rs210135-A	NR	4E-10	(PLT)	5.44	[3.74-7.14] 10^9/l increase	Affymetrix, Illumina [~ 2110000] (imputed)	N
840	chr6	33541506	33541507	rs511515	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	6p21.31		rs511515-G	NR	9E-364		0.0867	[0.083-0.091] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
840	chr6	33541506	33541507	rs511515	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.31		rs511515-A	0.3	6E-21				Affymetrix [10369434] (imputed)	N
840	chr6	33541506	33541507	rs511515	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	6p21.31	BAK1	rs511515-G	0.701087	2E-274		0.0921053	[0.087-0.097] unit increase	Affymetrix [93095623] (imputed)	N
840	chr6	33541506	33541507	rs511515	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	6p21.31	BAK1	rs511515-G	0.701058	2E-241		0.08639699	[0.081-0.091] unit increase	Affymetrix [93095623] (imputed)	N
840	chr6	33541506	33541507	rs511515	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6p21.31	BAK1	rs511515-G	0.700945	3E-25		0.025923308	[0.021-0.031] unit increase	Affymetrix [93095623] (imputed)	N
840	chr6	33541506	33541507	rs511515	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Sunburns	approximately 344,000 European ancestry individuals	NA	6p21.31		rs511515-?	NR	7E-17				NR [~ 8900000] (imputed)	N
840	chr6	33541506	33541507	rs511515	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	6p21.31		rs511515-?	NR	5E-36				NR [~ 8900000] (imputed)	N
840	chr6	33541506	33541507	rs511515	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	6p21.31	BAK1	rs511515-G	0.6997	1E-18		0.0341946	[0.027-0.042] unit increase	Affymetrix [~ 2500000] (imputed)	N
840	chr6	33541506	33541507	rs511515	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	6p21.31	BAK1	rs511515-G	0.6998	3E-17		0.03274318	[0.025-0.04] unit increase	Affymetrix [~ 2500000] (imputed)	N
840	chr6	33541506	33541507	rs511515	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	6p21.31	BAK1	rs511515-G	0.6998	1E-17		0.03323196	[0.026-0.041] unit increase	Affymetrix [~ 2500000] (imputed)	N
840	chr6	33541718	33541719	rs513349	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Platelet count	8,850 African American individuals, 18,949 Hispanic/Latino individuals, 541 Asian ancestry individuals, 603 Native American ancestry individuals, 385 individuals	NA	6p21.31	NR	rs513349-?	NR	7E-24		5.200036	[4.19-6.21] unit increase	Illumina [30743395] (imputed)	N
840	chr6	33541718	33541719	rs513349	23263863	Li J	2012-12-20	Hum Mol Genet	GWAS of blood cell traits identifies novel associated loci and epistatic interactions in Caucasian and African-American children.	Platelet count	7,943 African American children, 6,234 European ancestry children	NA	6p21.31	BAK1	rs513349-A	NR	2E-12		7.7549	[5.59-9.92] unit decrease	Illumina [544917]	N
840	chr6	33542522	33542523	rs9296095	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Platelet count	16,201 African American or Afro-Caribbean individuals	NA	6p21.31		rs9296095-T	0.2887	2E-14		0.0946	[0.07-0.119] unit increase	Affymetrix, Illumina [NR] (imputed)	N
840	chr6	33542522	33542523	rs9296095	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	6p21.31	NR	rs9296095-C	0.197	5E-9		0.0341	[0.023-0.045] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
840	chr6	33542522	33542523	rs9296095	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Platelet count	8,850 African American individuals, 18,949 Hispanic/Latino individuals, 541 Asian ancestry individuals, 603 Native American ancestry individuals, 385 individuals	NA	6p21.31	NR	rs9296095-?	NR	2E-21		5.459103	[4.33-6.58] unit increase	Illumina [30743395] (imputed)	N
840	chr6	33542522	33542523	rs9296095	25705162	Oh JH	2014-12-31	Genomics Inform	Genome-wide association study identifies candidate Loci associated with platelet count in koreans.	Platelet count	8,842 Korean ancestry individuals	7,861 Korean ancestry individuals	6p21.31	BAK1	rs9296095-G	0.23	1E-15		4.8	[2.51-7.09] unit increase	Affymetrix [2152228] (imputed)	N
840	chr6	33542537	33542538	rs210138	28604732	Wang Z	2017-06-12	Nat Genet	Meta-analysis of five genome-wide association studies identifies multiple new loci associated with testicular germ cell tumor.	Testicular germ cell tumor	3,558 European ancestry cases, 13,970 European ancestry controls	NA	6p21.31	BAK1, AY383626, C6orf227	rs210138-G	0.18	3E-34		1.55	1.44-1.66	Illumina [9210350] (imputed)	N
840	chr6	33542537	33542538	rs210138	28604728	Litchfield K	2017-06-12	Nat Genet	Identification of 19 new risk loci and potential regulatory mechanisms influencing susceptibility to testicular germ cell tumor.	Testicular germ cell tumor	5,518 European ancestry cases, 19,055 European ancestry controls	1,801 European ancestry cases, 4,027 European ancestry controls	6p21.31	C6orf227, BAK1, AY383626	rs210138-G	0.21	4E-37		1.48	[1.42-1.54]	Illumina [at least 371504] (imputed)	N
840	chr6	33542537	33542538	rs210138	23666240	Ruark E	2013-05-12	Nat Genet	Identification of nine new susceptibility loci for testicular cancer, including variants near DAZL and PRDM14.	Testicular germ cell tumor	986 European ancestry cases, 4,946 European ancestry controls	1,064 European ancestry cases, 10,082 European ancestry controls	6p21.31	BAK1	rs210138-G	0.19	2E-24		1.44	[1.30-1.61]	Illumina [307291]	N
840	chr6	33542537	33542538	rs210138	23666239	Chung CC	2013-05-12	Nat Genet	Meta-analysis identifies four new loci associated with testicular germ cell tumor.	Testicular germ cell tumor	582 European ancestry male cases, 1,056 European ancestry male controls	3,560 European ancestry male cases, 8,510 European ancestry male controls	6p21.31	BAK1	rs210138-G	NR	3E-7		1.62	[1.35-1.95]	Illumina [NR]	N
840	chr6	33542537	33542538	rs210138	19483681	Rapley EA	2009-05-31	Nat Genet	A genome-wide association study of testicular germ cell tumor.	Testicular germ cell tumor	730 cases, 1,435 controls	571 cases, 1,806 controls	6p21.31	BAK1	rs210138-G	0.20	1E-13		1.5	[1.28-1.75]	Illumina [307666]	N
840	chr6	33545124	33545125	rs5745587	28031487	Guo MH	2016-12-28	Proc Natl Acad Sci U S A	Comprehensive population-based genome sequencing provides insight into hematopoietic regulatory mechanisms.	Platelet count	2,083 European ancestry individuals	NA	6p21.31	BAK1	rs5745587-?	0.274	3E-8		4.1	[NR] 1,000/?L increase	NR [16536512] (imputed)	N
840	chr6	33546497	33546498	rs5745582	35023831	Chong M	2022-01-13	Elife	GWAS and ExWAS of blood Mitochondrial DNA copy number identifies 71 loci and highlights a potential causal role in dementia.	Mitochondrial DNA copy number	395,718 British, Irish, Other White, South Asian, African ancestry individuals	NA	6p21.31	NR	rs5745582-T	0.278954	3E-14		0.021	[0.016-0.026] unit increase	Affymetrix [23037915] (imputed)	N
840	chr6	33546497	33546498	rs5745582	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	6p21.31		rs5745582-T	0.2283	9E-64		0.0664207	[0.059-0.074] unit increase	Illumina [13478928] (imputed)	N
840	chr6	33546497	33546498	rs5745582	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.31		rs5745582-C	0.821	2E-94				Affymetrix [10369434] (imputed)	N
840	chr6	33546497	33546498	rs5745582	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Platelet count	27,236 European ancestry individuals	NA	6p21.31		rs5745582-T	0.7357	5E-16		0.0881	[0.067-0.109] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
840	chr6	33546497	33546498	rs5745582	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	6p21.31	BAK1	rs5745582-T	0.179778	2E-109		0.07077183	[0.065-0.077] unit increase	Affymetrix [93095623] (imputed)	N
840	chr6	33546497	33546498	rs5745582	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	6p21.31	BAK1	rs5745582-T	0.179757	2E-95		0.06597006	[0.06-0.072] unit increase	Affymetrix [93095623] (imputed)	N
840	chr6	33546497	33546498	rs5745582	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	145,648 East Asian ancestry individuals	NA	6p21.31	NR	rs5745582-C	0.769053	2E-53		0.067719	[0.059-0.076] SD units decrease	Affymetrix, Illumina [16710488] (imputed)	N
840	chr6	33546836	33546837	rs210142	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	6p21.31	BAK1	rs210142-C	0.7016	3E-171		0.1113763	[0.1-0.12] unit increase	Affymetrix [~ 2500000] (imputed)	N
840	chr6	33546836	33546837	rs210142	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	6p21.31	BAK1	rs210142-C	0.7017	1E-144		0.1019707	[0.094-0.11] unit increase	Affymetrix [~ 2500000] (imputed)	N
840	chr6	33546836	33546837	rs210142	23770605	Berndt SI	2013-06-16	Nat Genet	Genome-wide association study identifies multiple risk loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	2,179 European ancestry cases, 6,221 European ancestry controls	1,709 European ancestry cases, 6,318 European ancestry controls	6p21.31	BAK1	rs210142-C	0.72	5E-8		1.22	[NR]	Illumina [549934]	N
840	chr6	33546836	33546837	rs210142	22700719	Slager SL	2012-06-13	Blood	Common variation at 6p21.31 (BAK1) influences the risk of chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	1,121 European ancestry cases, 3,745 European ancestry controls	861 European ancestry cases, 2,033 European ancestry controls	6p21.31	BAK1	rs210142-C	0.70	9E-16		1.4	[1.25-1.57]	Affymetrix, Illumina [~ 1500000] (imputed)	N
840	chr6	33546929	33546930	rs210143	34553764	Little A	2021-09-06	Hum Mol Genet	Whole genome sequence analysis of platelet traits in the NHLBI trans-omics for precision medicine initiative.	Platelet count	14,392 African American individuals, 13,985 Hispanic or Latin American individuals, 32,129 European ancestry individuals, 681 East Asian ancestry individuals, 13 individuals	10,664 individuals, 10,694 African American individuals, 7,287 Hispanic or Latin American individuals, 7,857 African ancestry individuals	6p21.31		rs210143-C	0.72902	2E-41		5.680025	[4.85-6.51] unit increase	NR [NR]	N
840	chr6	33546929	33546930	rs210143	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.31		rs210143-T	0.298	1E-218				Affymetrix [10369434] (imputed)	N
840	chr6	33546929	33546930	rs210143	33385171	Hagg S	2020-12-31	Hum Genet	Deciphering the genetic and epidemiological landscape of mitochondrial DNA abundance.	Mitochondrial DNA levels	295,150 European ancestry individuals	NA	6p21.31	NR	rs210143-T	0.2734	3E-36		0.0353284	[0.03-0.041] unit decrease	Affymetrix [3505788] (imputed)	N
840	chr6	33546929	33546930	rs210143	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	6p21.31	BAK1	rs210143-C	0.702883	5E-17		0.021479705	[0.016-0.026] unit increase	Affymetrix [93095623] (imputed)	N
840	chr6	33546929	33546930	rs210143	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Platelet count	108,208 Japanese ancestry individuals	NA	6p21.31	BAK1	rs210143-?	NR	2E-27		0.05484	[0.045-0.065] unit increase novel	Illumina [6108953] (imputed)	N
840	chr6	33546929	33546930	rs210143	28165464	Law PJ	2017-02-06	Nat Commun	Genome-wide association analysis implicates dysregulation of immunity genes in chronic lymphocytic leukaemia.	Chronic lymphocytic leukemia	4,478 European ancestry cases and 13,213 European ancestry controls.	1,722 European ancestry cases and 4,385 European ancestry controls.	6p21.31	BAK1	rs210143-C	NR	6E-16		1.26	[1.19-1.33]	Affymetrix, Illumina [> 10000000] (imputed)	N
840	chr6	33546929	33546930	rs210143	28112199	Law PJ	2017-01-23	Sci Rep	Genome-wide association analysis of chronic lymphocytic leukaemia, Hodgkin lymphoma and multiple myeloma identifies pleiotropic risk loci.	B-cell malignancies (chronic lymphocytic leukemia, Hodgkin lymphoma or multiple myeloma) (pleiotropy)	1,842 European ancestry chronic lymphocytic leukemia cases, 1,465 European ancestry Hodgkin lymphoma cases, 3,790 European ancestry multiple myeloma cases, 7,324 European ancestry controls	NA	6p21.31	BAK1	rs210143-C	NR	7E-12				Illumina [10806625] (imputed)	N
840	chr6	33546929	33546930	rs210143	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	6p21.31	BAK1	rs210143-C	0.7021	3E-15		0.0309298	[0.023-0.039] unit decrease	Affymetrix [~ 2500000] (imputed)	N
840	chr6	33547428	33547429	rs9282611	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.31		rs9282611-C	0.975	3E-12				Affymetrix [10369434] (imputed)	N
840	chr6	33548393	33548394	rs5745568	33545615	Hsu LA	2021-01-19	Atherosclerosis	Circulating chemerin levels are determined through circulating platelet counts in nondiabetic Taiwanese people: A bidirectional Mendelian randomization study.	Platelet count	17,037 Han Chinese ancestry individuals	NA	6p21.31	BAK1	rs5745568-?	NR	2E-15		5.838	[4.57-7.11] unit increase (adjusted)	Affymetrix [603527]	N
840	chr6	33548393	33548394	rs5745568	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	6p21.31	GGNBP1, BAK1	rs5745568-T	0.179745	6E-9		0.017055653	[0.011-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
840	chr6	33548393	33548394	rs5745568	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Platelet count	8,850 African American individuals, 18,949 Hispanic/Latino individuals, 541 Asian ancestry individuals, 603 Native American ancestry individuals, 385 individuals	NA	6p21.31	NR	rs5745568-?	NR	3E-13		4.78007	[3.5-6.06] unit increase	Illumina [30743395] (imputed)	N
840	chr6	33548393	33548394	rs5745568	26805783	Schick UM	2016-01-21	Am J Hum Genet	Genome-wide Association Study of Platelet Count Identifies Ancestry-Specific Loci in Hispanic/Latino Americans.	Platelet count	12,491 Hispanic/Latin American individuals	7,170 Hispanic/Latin American individuals	6p21.31	BAK1	rs5745568-T	0.24	2E-10		0.1	[0.08-0.12] unit increase	Illumina [2232944] (imputed)	N
840	chr6	33548393	33548394	rs5745568	20139978	Kamatani Y	2010-02-07	Nat Genet	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Platelet count	14,806 Japanese ancestry individuals	NA	6p21.31	BAK1	rs5745568-T	0.23	7E-11		0.09	[0.063-0.117] unit increase	Illumina [561583]	N
840	chr6	33550024	33550025	rs210148	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	6p21.31	NR	rs210148-G	0.364816	8E-377		0.079265	[0.076-0.083] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
840	chr6	33552201	33552202	rs549888	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	6p21.31	GGNBP1	rs549888-G	0.390162	3E-9		0.013672811	[0.0092-0.0182] unit decrease	Affymetrix [93095623] (imputed)	N
840	chr6	33552201	33552202	rs549888	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p21.31	NR	rs549888-G	0.462025	9E-396				Affymetrix, Illumina [24588908] (imputed)	N
840	chr6	33552706	33552707	rs75080135	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	6p21.31	NR	rs75080135-C	0.2074	2E-13		0.0357	[0.026-0.045] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
840	chr6	33552706	33552707	rs75080135	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	6p21.31	GGNBP1	rs75080135-C	0.1773	7E-116		0.1096288	[0.1-0.12] unit increase	Affymetrix [~ 2500000] (imputed)	N
840	chr6	33552706	33552707	rs75080135	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	6p21.31	GGNBP1	rs75080135-C	0.1773	6E-101		0.1019131	[0.093-0.111] unit increase	Affymetrix [~ 2500000] (imputed)	N
840	chr6	33553579	33553580	rs394199	26920376	Wang Y	2016-02-26	Mult Scler	Genetic overlap between multiple sclerosis and several cardiovascular disease risk factors.	Multiple sclerosis and systolic blood pressure (pleiotropy)	230,204 individuals	NA	6p21.31	GGNBP1	rs394199-?	NR	2E-8			[0.8625-0.9356]	NR [2382073]	N
840	chr6	33554146	33554147	rs419261	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	6p21.31		rs419261-?	NR	5E-15				NR [~ 8900000] (imputed)	N
841	chr6	33556027	33556028	rs420628	31926635	Coleman JRI	2019-11-01	Biol Psychiatry	The Genetics of the Mood Disorder Spectrum: Genome-wide Association Analyses of More Than 185,000 Cases and 439,000 Controls.	Bipolar disorder or major depressive disorder	164,933 European ancestry major depressive disorder cases, 20,352 European ancestry bipolar disorder cases, 439,741 European ancestry controls	NA	6p21.31	NR	rs420628-?	NR	9E-8				NR [NR] (imputed)	N
841	chr6	33558657	33558658	rs422907	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.31		rs422907-G	0.347	4E-21				Affymetrix [10369434] (imputed)	N
841	chr6	33558914	33558915	rs386906	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	6p21.31	GGNBP1	rs386906-T	0.6533	7E-27		0.0213	[0.017-0.025] unit increase	Affymetrix [18391927] (imputed)	N
841	chr6	33567103	33567104	rs576166	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Forns index in high alcohol intake	33,437 British ancestry individuals	NA	6p21.31		rs576166-?	0.1827	7E-13		0.004462	unit decrease	NR [6200000] (imputed)	N
841	chr6	33567103	33567104	rs576166	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Fibrosis-4 index in high alcohol intake	33,324 British ancestry individuals	NA	6p21.31		rs576166-?	0.1827	7E-14		0.01092	unit decrease	NR [6200000] (imputed)	N
841	chr6	33567103	33567104	rs576166	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Aspartate aminotransferase platelet ratio index in high alcohol intake	33,330 British ancestry individuals	NA	6p21.31		rs576166-?	0.1827	2E-14		0.01376	unit decrease	NR [6200000] (imputed)	N
841	chr6	33571984	33571985	rs493063	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6p21.31		rs493063-A	0.208471	2E-13		0.020588577	[0.015-0.026] unit increase	Affymetrix [93095623] (imputed)	N
841	chr6	33581804	33581805	rs9469525	33385171	Hagg S	2020-12-31	Hum Genet	Deciphering the genetic and epidemiological landscape of mitochondrial DNA abundance.	Mitochondrial DNA levels	295,150 European ancestry individuals	NA	6p21.31	NR	rs9469525-A	0.2406	1E-13		0.0238683	[0.018-0.03] unit increase	Affymetrix [3505788] (imputed)	N
841	chr6	33590290	33590291	rs4713641	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	6p21.31		rs4713641-?	NR	5E-8				Affymetrix [NR] (imputed)	N
841	chr6	33590290	33590291	rs4713641	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.31		rs4713641-C	0.043	2E-17				Affymetrix [10369434] (imputed)	N
841	chr6	33595021	33595021	rs11374195	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls, 33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	6p21.31		rs11374195-AT	NR	2E-25		0.1736	[0.14-0.21] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
841	chr6	33601729	33601730	rs71565398	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma and attention deficit hyperactivity disorder	46,802 European ancestry asthma cases, 19,099 European ancestry attention deficit hyperactivity disorder cases, 381,675 European ancestry controls	NA	6p21.31	IP6K3, ITPR3, LEMD2, MLN, UQCC2	rs71565398-?	NR	4E-8				Affymetrix [up to 8274727] (imputed)	N
841	chr6	33606730	33606731	rs55642707	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p21.31	NR	rs55642707-A	0.269563	1E-10				Affymetrix, Illumina [24558453] (imputed)	N
841	chr6	33609173	33609174	rs72882038	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.31		rs72882038-G	0.828	6E-15				Affymetrix [10369434] (imputed)	N
841	chr6	33618161	33618162	rs9394159	21900946	Nakabayashi K	2011-09-08	J Hum Genet	Identification of independent risk loci for Graves' disease within the MHC in the Japanese population.	Graves' disease	1,119 Japanese ancestry cases, 2,718 Japanese ancestry controls	432 Japanese ancestry cases, 1,157 Japanese ancestry controls	6p21.31	MHC	rs9394159-T	0.53	4E-12		1.36	[1.24-1.48]	Perlegen [268068]	N
841	chr6	33618823	33618824	rs10947423	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.31		rs10947423-C	0.788	1E-50				Affymetrix [10369434] (imputed)	N
841	chr6	33619441	33619442	rs10807127	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	6p21.31		rs10807127-?	NR	4E-8				NR [~ 8900000] (imputed)	N
841	chr6	33624732	33624733	rs999943	19553259	Cotsapas C	2009-06-24	Hum Mol Genet	Common body mass index-associated variants confer risk of extreme obesity.	Obesity (extreme)	775 European ancestry cases, 3,197 European ancestry controls	NA	6p21.31	ITPR3	rs999943-T	0.72	1E-6		1.37	[1.20-1.56]	Illumina [457251]	N
841	chr6	33627076	33627077	rs2296342	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	6p21.31	NR	rs2296342-A	NR	2E-6		1.05	[NR]	Illumina [7158791] (imputed)	N
841	chr6	33635564	33635565	rs78399616	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	6p21.31		rs78399616-?	NR	5E-8				Affymetrix [NR] (imputed)	N
841	chr6	33643557	33643558	rs2229637	28203683	Heit JA	2017-02-16	Thromb Haemost	Identification of unique venous thromboembolism-susceptibility variants in African-Americans.	Venous thromboembolism adjusted for sickle cell variant rs77121243-T	393 African American cases, 4,941 African American controls.	NR	6p21.31	ITPR3	rs2229637-A	0.1863	5E-7		1.587	[1.325-1.9]	Affymetrix, Illumina [14074516] (imputed)	N
841	chr6	33644188	33644189	rs57088429	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	6p21.31		rs57088429-A	NR	4E-12		0.0169	[0.012-0.022] unit decrease	Affymetrix, Illumina [20535873] (imputed)	N
841	chr6	33645114	33645115	rs2274197	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	74,970 East Asian ancestry individuals	NA	6p21.31		rs2274197-T	0.235834	2E-8		0.0311724	[0.02-0.042] unit increase	Illumina [13465896] (imputed)	N
841	chr6	33647057	33647058	rs10947428	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.31		rs10947428-T	0.782	4E-35				Affymetrix [10369434] (imputed)	N
841	chr6	33647057	33647058	rs10947428	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	6p21.31	NR	rs10947428-C	0.2142	9E-21		1.0706638	[1.06-1.08]	Affymetrix, Illumina [NR] (imputed)	N
841	chr6	33647057	33647058	rs10947428	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	6p21.31	NA	rs10947428-C	0.2172	7E-15	(Female)	1.0729614	[1.06-1.09]	Affymetrix, Illumina [NR] (imputed)	N
841	chr6	33647057	33647058	rs10947428	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	6p21.31		rs10947428-?	NR	2E-10				NR [~ 8900000] (imputed)	N
841	chr6	33647057	33647058	rs10947428	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	6p21.31	ITPR3	rs10947428-C	0.19	4E-13		1.046	[1.03-1.06]	Affymetrix, Illumina [8307659] (imputed)	N
841	chr6	33651321	33651322	rs6915136	33830993	Johnston KJA	2021-04-08	PLoS Genet	Sex-stratified genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	387,649 British ancestry individuals	NA	6p21.31	TPR3	rs6915136-?	NR	1E-8			[NR]	NR [NR] (imputed)	N
841	chr6	33651974	33651975	rs35095444	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (underestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	6p21.31	NR	rs35095444-?	NR	7E-11		6.518	NR z score decrease	Illumina [at least 830937] (imputed)	N
841	chr6	33653110	33653111	rs942637	26920376	Wang Y	2016-02-26	Mult Scler	Genetic overlap between multiple sclerosis and several cardiovascular disease risk factors.	Multiple sclerosis and body mass index (pleiotropy)	151,013 individuals	NA	6p21.31	ITPR3	rs942637-?	NR	2E-7			[1.0883-1.1837]	NR [2400377]	N
841	chr6	33654896	33654897	rs942642	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6p21.31		rs942642-T	0.3139	8E-9	(conditional-joint)	0.0088	[0.0059-0.0117] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
841	chr6	33658108	33658109	rs764753	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	6p21.31	NR	rs764753-A	0.32505	1E-9		0.04539865	[0.031-0.06] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
841	chr6	33659045	33659046	rs4711336	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	6p21.31	HMGA1	rs4711336-?	NR	3E-8	(Conditiond on rs2780226)		[NR]	Affymetrix, Illumina [2834208] (imputed)	N
841	chr6	33659535	33659536	rs2296740	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6p21.31		rs2296740-?	NR	3E-52				NR [~ 8900000] (imputed)	N
841	chr6	33661034	33661035	rs3818527	32811377	Dueker ND	2020-08-19	Stroke	Extreme Phenotype Approach Suggests Taste Transduction Pathway for Carotid Plaque in a Multi-Ethnic Cohort.	Total carotid plaque area (excess vs minimal atherosclerosis)	180 Hispanic individuals, 100 Black individuals, 60 European ancestry individuals	NA	6p21.31	ITPR3	rs3818527-A	0.4	3E-6		0.39	[0.26-0.58]	Affymetrix [NR] (imputed)	N
841	chr6	33662294	33662295	rs3227	23722424	Rietveld CA	2013-05-30	Science	GWAS of 126,559 individuals identifies genetic variants associated with educational attainment.	Educational attainment	up to 101,069 European ancestry individuals	25,490 European ancestry individuals	6p21.31	ITPR3	rs3227-C	0.498	3E-7	(College)	1.037	[NR]	Affymetrix, Illumina, Perlegen [up to 2309290] (imputed)	N
841	chr6	33662666	33662667	rs684119	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.31		rs684119-C	0.85	2E-23				Affymetrix [10369434] (imputed)	N
841	chr6	33677321	33677322	rs17527406	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.31	NR	rs17527406-C	0.02091	2E-10	(YARS)	0.03559	NR unit increase	Illumina [1671387] (imputed)	N
841	chr6	33677321	33677322	rs17527406	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.31	NR	rs17527406-C	0.02091	1E-8	(ARSA)	0.004716	NR unit increase	Illumina [1671387] (imputed)	N
841	chr6	33677321	33677322	rs17527406	28077804	Ben-Avraham D	2017-01-10	Aging (Albany NY)	The complex genetics of gait speed: genome-wide meta-analysis approach.	Gait speed in old age	31,478 European ancestry older adults	2,588 European ancestry older adults	6p21.31	UQCC2, MNF1, M19	rs17527406-C	NR	7E-7		0.0368	[0.022-0.051] m/sec increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
841	chr6	33684312	33684313	rs649775	30194254	Sud A	2018-09-07	Blood	Genome-wide association study implicates immune dysfunction in the development of Hodgkin lymphoma.	Hodgkin's lymphoma	5,325 European ancestry cases, 22,425 European ancestry controls	NA	6p21.31	ITPR3, UQCC2, IP6K3	rs649775-A	0.11	2E-10		1.29	[1.19-1.40]	Illumina [> 10000000] (imputed)	N
841	chr6	33684357	33684358	rs11758031	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	6p21.31		rs11758031-?	NR	1E-15				NR [~ 8900000] (imputed)	N
842	chr6	33687006	33687007	rs942641	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.31	IP6K3	rs942641-A	0.4899	6E-6		0.0297	[0.017-0.042] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
842	chr6	33689519	33689520	rs2966	25201988	Rietveld CA	2014-09-08	Proc Natl Acad Sci U S A	Common genetic variants associated with cognitive performance identified using the proxy-phenotype method.	Educational attainment	106,736 European ancestry individuals	NA	6p21.31	intergenic	rs2966-T	0.452	4E-7		0.022	[NR] unit increase	Affymetrix, Illumina [NR] (imputed)	N
842	chr6	33690690	33690691	rs36101795	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.31	NR	rs36101795-T	0.01045	4E-9	(YARS)	0.04883	NR unit increase	Illumina [1671387] (imputed)	N
842	chr6	33694690	33694691	rs78847102	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	6p21.31		rs78847102-?	NR	8E-8				NR [~ 8900000] (imputed)	N
842	chr6	33696784	33696785	rs471942	26920376	Wang Y	2016-02-26	Mult Scler	Genetic overlap between multiple sclerosis and several cardiovascular disease risk factors.	Multiple sclerosis and waist-to-hip-ratio (pleiotropy)	104,315 individuals	NA	6p21.31	IP6K3	rs471942-?	NR	5E-6			[1.0918-1.2145]	NR [2376820]	N
842	chr6	33697551	33697552	rs4713669	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	6p21.31	IP6K3	rs4713669-A	0.413102	5E-19		0.021578493	[0.017-0.026] unit increase	Affymetrix [93095623] (imputed)	N
842	chr6	33697551	33697552	rs4713669	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	6p21.31	IP6K3	rs4713669-A	0.413077	4E-18		0.02103432	[0.016-0.026] unit increase	Affymetrix [93095623] (imputed)	N
842	chr6	33700375	33700376	rs688209	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	6p21.31	IP6K3	rs688209-T	0.8021	1E-16		0.0188	[0.014-0.023] unit increase	Affymetrix [18391927] (imputed)	N
842	chr6	33705354	33705355	rs73743323	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Phosphorus levels	42,793 Japanese ancestry individuals	NA	6p21.31	IP6K3	rs73743323-?	NR	2E-13		0.1414	[0.1-0.18] unit decrease novel	Illumina [6108953] (imputed)	N
842	chr6	33706478	33706479	rs9469578	20558539	Kestenbaum B	2010-06-17	J Am Soc Nephrol	Common genetic variants associate with serum phosphorus concentration.	Phosphorus levels	16,264 European ancestry individuals	5,444 individuals	6p21.31	LEMD2, MLN, ITPR3	rs9469578-T	0.08	1E-11		0.06	[NR] mg/dl decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
842	chr6	33707598	33707599	rs482786	33830993	Johnston KJA	2021-04-08	PLoS Genet	Sex-stratified genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	387,649 British ancestry individuals	NA	6p21.31	P6K3	rs482786-?	NR	2E-9			[NR]	NR [NR] (imputed)	N
842	chr6	33707598	33707599	rs482786	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	6p21.31	IP6K3	rs482786-?	NR	2E-12		0.015925342	[0.011-0.02] unit increase	NR [7306098]	N
842	chr6	33714780	33714781	rs530614	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Whole brain grey matter density	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	6p21.31	NR	rs530614-?		9E-6				Illumina [4322238] (imputed)	N
842	chr6	33715322	33715323	rs11755421	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	6p21.31		rs11755421-?	NR	1E-11				NR [~ 8900000] (imputed)	N
842	chr6	33717423	33717424	rs28651968	33830993	Johnston KJA	2021-04-08	PLoS Genet	Sex-stratified genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	387,649 British ancestry individuals	NA	6p21.31	P6K3, LEMD2	rs28651968-?	NR	2E-8			[NR]	NR [NR] (imputed)	N
842	chr6	33717769	33717770	rs9469583	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	6p21.31	IP6K3	rs9469583-T	0.480341	9E-12		0.0130287	[0.0093-0.0168] unit decrease	Affymetrix [NR] (imputed)	N
842	chr6	33717950	33717951	rs7752152	33768542	Liu Y	2021-03-26	Clin Pharmacol Ther	Class II HLA Variants Associate with Risk of Pegaspargase Hypersensitivity.	Asparaginase hypersensitivity in acute lymphoblastic leukemia	798 Native American individuals	NA	6p21.31	NR	rs7752152-A	NR	2E-6		6.42	[NR]	Illumina [NR] (imputed)	N
842	chr6	33718417	33718418	rs4713675	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	6p21.31	IP6K3	rs4713675-T	0.5449	3E-67		0.06381666	[0.057-0.071] unit increase	Affymetrix [~ 2500000] (imputed)	N
842	chr6	33730335	33730336	rs76561625	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.31	NR	rs76561625-G	0.01568	9E-9	(YARS)	0.03553	NR unit increase	Illumina [1671387] (imputed)	N
842	chr6	33731786	33731787	rs943466	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	6p21.31	NR	rs943466-G	NR	6E-7		0.015	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
842	chr6	33731786	33731787	rs943466	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.31	LEMD2	rs943466-?	NR	8E-8	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
842	chr6	33731786	33731787	rs943466	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.31	LEMD2	rs943466-?	NR	7E-6	(EA, women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
842	chr6	33731786	33731787	rs943466	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.31	LEMD2	rs943466-G	0.7583	3E-8	(EA)	0.0242	[0.016-0.033] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
842	chr6	33731786	33731787	rs943466	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	6p21.31	VPS52, RPS18, B3GALT4, WDR46, KIFC1, PHF1, CUTA, SYNGAP1, BAK1, GGNBP1, LINC00336, ITPR3, MNF1, IP6K3, MLN, LOC100507584, MIR1275, GRM4, HMGA1, C6orf1	rs943466-A	0.245864985977407	5E-9		0.018314632	unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
842	chr6	33731786	33731787	rs943466	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	6p21.31	LEMD2	rs943466-G	0.755	8E-6	(EA)	0.016	[0.0088-0.0226] kg/m2 increase	Affymetrix, Illumina [2550021]	N
842	chr6	33731786	33731787	rs943466	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	6p21.31	LEMD2	rs943466-G	0.752	9E-6		0.015	[0.0083-0.0217] kg/m2 increase	Affymetrix, Illumina [2550021]	N
842	chr6	33732364	33732365	rs59137082	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	6p21.31	LEMD2	rs59137082-C	0.755945	2E-9		0.0136526	[0.0092-0.0181] unit decrease	Affymetrix [NR] (imputed)	N
842	chr6	33735470	33735471	rs12173787	30940143	Zhu Z	2019-04-02	Respir Res	Genetic overlap of chronic obstructive pulmonary disease and cardiovascular disease-related traits: a large-scale genome-wide cross-trait analysis.	Chronic obstructive pulmonary disease or resting heart rate (pleiotropy)	12,550 European and unknown ancestry chronic obstructive pulmonary disease cases, 46,368 European and unknown ancestry controls, 458,969 European ancestry individuals	NA	6p21.31	BAK1, CUTA, GGNBP1, IP6K3, ITPR3, KIFC1, LEMD2, LINC00336, MIR5004, MLN, PHF1, SYNGAP1, UQCC2, ZBTB9	rs12173787-?	NR	3E-15				Affymetrix [up to 7325140] (imputed)	N
842	chr6	33736489	33736490	rs747694	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6p21.31		rs747694-?	NR	4E-11				NR [~ 8900000] (imputed)	N
842	chr6	33737435	33737436	rs747692	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	6p21.31		rs747692-?	NR	5E-8				Affymetrix [NR] (imputed)	N
842	chr6	33740024	33740025	rs2296743	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6p21.31	LEMD2, MLN	rs2296743-A	0.302	8E-6	(Dinner intake, adj EER )	0.03	[NR] kcal increase	Illumina [899892]	N
842	chr6	33741371	33741371	rs10660361	33830993	Johnston KJA	2021-04-08	PLoS Genet	Sex-stratified genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	178,556 British ancestry men	NA	6p21.31	LEMD2	rs10660361-C	NR	2E-8		0.02	[0.012-0.028] unit increase	NR [NR] (imputed)	N
842	chr6	33741715	33741716	rs4711350	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	6p21.31	LEMD2	rs4711350-G	NR	2E-8	(EA)	1.082	[1.05-1.11]	Illumina [6627481] (imputed)	N
842	chr6	33741715	33741716	rs4711350	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	6p21.31	NR	rs4711350-G	NR	9E-9		1.0869565	[NR]	Illumina [7158791] (imputed)	N
842	chr6	33748937	33748937	rs3833665	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	6p21.31	NR	rs3833665-GA	0.2259	1E-9		0.018059608	[0.012-0.024] unit decrease	Affymetrix [10549349] (imputed)	N
842	chr6	33757013	33757014	rs73412140	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MLN	5,368 Icelandic ancestry individuals	NA	6p21.31		rs73412140-T	0.2698	2E-118		0.473198	[0.43-0.51] unit decrease	Illumina [7506463] (imputed)	N
842	chr6	33762241	33762242	rs2274459	19553259	Cotsapas C	2009-06-24	Hum Mol Genet	Common body mass index-associated variants confer risk of extreme obesity.	Obesity (extreme)	775 European ancestry cases, 3,197 European ancestry controls	NA	6p21.31	MLN	rs2274459-A	0.17	6E-6		1.38	[1.20-1.58]	Illumina [457251]	N
842	chr6	33763754	33763754	rs5875463	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.31	NR	rs5875463-C	0.298	9E-55	(Promotilin, MLN.5631.83.3)	0.45	[0.39-0.51] unit decrease	Affymetrix [10572788] (imputed)	N
842	chr6	33764032	33764033	rs751728	23850713	Yang SK	2013-07-14	Gut	Genome-wide association study of Crohn's disease in Koreans revealed three new susceptibility loci and common attributes of genetic susceptibility across ethnic populations.	Crohn's disease	532 Korean ancestry cases, 733 Korean ancestry controls	1,779 Korean ancestry cases, 1,709 Korean ancestry controls	6p21.31	LEMD2, MLN, ITPR3, MIF1, IP6K3	rs751728-T	0.733	1E-8		1.32	[1.20-1.45]	Illumina [5664371] (imputed)	N
842	chr6	33767787	33767788	rs3793079	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6p21.31	NR	rs3793079-T	0.6256	3E-8		1.0347682	[1.02-1.05]	Affymetrix [15688218] (imputed)	N
842	chr6	33770075	33770076	rs2395400	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.31	MLN	rs2395400-G	0.734375	4E-79	(MLN, 5631_83_3)	0.5008783	[0.45-0.55] unit increase	Illumina [> 1000000] (imputed)	N
842	chr6	33771672	33771673	rs2281819	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6p21.31	NR	rs2281819-?	NR	5E-10				Affymetrix [~ 8270000] (imputed)	N
842	chr6	33771672	33771673	rs2281819	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	6p21.31		rs2281819-?	NR	7E-11				NR [~ 8900000] (imputed)	N
842	chr6	33774947	33774948	rs10947439	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6p21.31		rs10947439-T	0.6627	1E-9		0.009	[0.0061-0.0119] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
842	chr6	33775640	33775641	rs1547669	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	6p21.31	MLN	rs1547669-G	0.497237	6E-12		0.017808	[0.013-0.023] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
842	chr6	33777232	33777256	rs147640352	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.31	MLN	rs147640352-C	0.536	4E-90	(Promotilin, MLN.5631.83.3)	0.47	[0.43-0.51] unit decrease	Affymetrix [10572788] (imputed)	N
842	chr6	33778963	33778964	rs9394169	27797806	Muller SH	2016-10-20	Brain	Genome-wide association study in essential tremor identifies three new loci.	Essential tremor	1,778 European ancestry cases, 5,376 European ancestry controls	1,029 European ancestry cases, 1,065 European ancestry controls	6p21.31	NR	rs9394169-G	0.4928	4E-6		1.1627907		Affymetrix [at least 416462] (imputed)	N
842	chr6	33784863	33784864	rs3957165	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	6p21.31		rs3957165-C	0.189	3E-8		0.008	[0.006-0.01] unit increase	NR [NR] (imputed)	N
842	chr6	33784863	33784864	rs3957165	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6p21.31	Intergenic	rs3957165-T	0.8096	7E-10	(MTAG)	0.0103	[0.007-0.0136] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
842	chr6	33788636	33788637	rs9368777	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gastric cancer	7,921 East Asian ancestry cases, 159,201 East Asian ancestry controls	NA	6p21.31		rs9368777-C	0.893005315	9E-11		0.17553963	[0.12-0.23] unit increase	Illumina [13428249] (imputed)	N
842	chr6	33789406	33789407	rs4713688	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	6p21.31	NA	rs4713688-T	0.1893	6E-9	(Male)	1.075	[1.05-1.1]	Affymetrix, Illumina [NR] (imputed)	N
842	chr6	33789406	33789407	rs4713688	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	6p21.31	NR	rs4713688-G	0.816	5E-9		0.00812985	[0.0054-0.0109] unit decrease	NR [9732723] (imputed)	N
842	chr6	33789406	33789407	rs4713688	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	6p21.31	NR	rs4713688-G	0.817	7E-9		0.0109367	[0.0072-0.0146] unit increase	NR [9732723] (imputed)	N
842	chr6	33793331	33793332	rs17529077	33830993	Johnston KJA	2021-04-08	PLoS Genet	Sex-stratified genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	387,649 British ancestry individuals	NA	6p21.31	MLN, LINC01016	rs17529077-?	NR	1E-9			[NR]	NR [NR] (imputed)	N
842	chr6	33794214	33794215	rs11751591	31194737	Johnston KJA	2019-06-13	PLoS Genet	Genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	387,649 British ancestry individuals	NA	6p21.31	MLN	rs11751591-G	0.1516	3E-10		0.0214	[0.015-0.028] unit increase	NR [NR]	N
842	chr6	33800339	33800340	rs78515650	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Skin reflectance (Melanin index)	720 South Asian ancestry individuals		6p21.31	NR	rs78515650-C	NR	6E-6		0.250354	[0.14-0.36] unit increase	Affymetrix, Illumina [at least 398118] (imputed)	N
842	chr6	33801509	33801510	rs12055409	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	6p21.31	MLN	rs12055409-A	0.3428	4E-8		0.002	[0.0014-0.0026] unit decrease	Affymetrix [15275733] (imputed)	N
842	chr6	33802262	33802263	rs17600945	33830993	Johnston KJA	2021-04-08	PLoS Genet	Sex-stratified genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	387,649 British ancestry individuals	NA	6p21.31	MLN, LINC01016	rs17600945-?	NR	1E-9			[NR]	NR [NR] (imputed)	N
842	chr6	33803751	33803752	rs10947452	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	6p21.31	NR	rs10947452-?		6E-10		0.0140576	[0.0096-0.0185] unit increase	Affymetrix [19400418] (imputed)	N
842	chr6	33805940	33805941	rs56366527	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.31		rs56366527-G	0.616	2E-23				Affymetrix [10369434] (imputed)	N
842	chr6	33805940	33805941	rs56366527	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p21.31	NR	rs56366527-A	0.3855	2E-7		0.0062	[0.0038-0.0086] unit decrease	NR [7666894] (imputed)	N
842	chr6	33807564	33807565	rs6922076	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder	29,475 European ancestry cases, 63,482 European ancestry controls	NA	6p21.31	NR	rs6922076-C	0.545976	7E-6		1.0706638	[1.04-1.1]	Affymetrix [7791636] (imputed)	N
842	chr6	33807637	33807638	rs4713692	34187846	Ong JS	2021-06-29	Gut	Multitrait genetic association analysis identifies 50 new risk loci for gastro-oesophageal reflux, seven new loci for Barrett's oesophagus and provides insights into clinical heterogeneity in reflux diagnosis.	Gastroesophageal reflux disease	129,080 European ancestry cases, 473,524 European ancestry controls	462,753 cases, 1,127,474 controls	6p21.31	MLN	rs4713692-C	0.63	3E-8		0.028	unit increase	NR [2324712] (imputed)	N
842	chr6	33816450	33816451	rs10947458	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	6p21.31		rs10947458-?	NR	5E-8				Affymetrix [NR] (imputed)	N
843	chr6	33817928	33817929	rs4713693	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	6p21.31	NR	rs4713693-C	0.432474728899002	1E-8		0.008383871	[0.0055-0.0113] unit increase	NR [NR]	N
843	chr6	33817928	33817929	rs4713693	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	6p21.31	NR	rs4713693-C	0.432474728899002	1E-8		0.0053467783	[0.0035-0.0072] unit increase	NR [NR]	N
843	chr6	33817928	33817929	rs4713693	21900946	Nakabayashi K	2011-09-08	J Hum Genet	Identification of independent risk loci for Graves' disease within the MHC in the Japanese population.	Graves' disease	1,119 Japanese ancestry cases, 2,718 Japanese ancestry controls	432 Japanese ancestry cases, 1,157 Japanese ancestry controls	6p21.31	MHC	rs4713693-T	0.65	7E-13		1.4	[1.28-1.53]	Perlegen [268068]	N
843	chr6	33825357	33825358	rs2104362	22005931	Kamboh MI	2011-10-18	Mol Psychiatry	Genome-wide association analysis of age-at-onset in Alzheimer's disease.	Alzheimer's disease (age of onset)	1,190 European ancestry cases, 1,032 cases	NA	6p21.31	LEMD2, MLN, MIR1275	rs2104362-?	NR	7E-6		0.8441	unit increase	Illumina [2543888] (imputed)	N
843	chr6	33833490	33833491	rs4711358	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6p21.31	LEMD2	rs4711358-?	NR	6E-6	(TAG 54:3)	0.16660197	[0.095-0.238] unit decrease	Affymetrix [at least 2500000] (imputed)	N
843	chr6	33833490	33833491	rs4711358	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6p21.31	LEMD2	rs4711358-?	NR	5E-6	(TAG 54:2)	0.16739182	[0.096-0.239] unit decrease	Affymetrix [at least 2500000] (imputed)	N
843	chr6	33833490	33833491	rs4711358	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6p21.31	LEMD2	rs4711358-?	NR	5E-6	(DAG 36:2)	0.1683804	[0.096-0.241] unit decrease	Affymetrix [at least 2500000] (imputed)	N
843	chr6	33833490	33833491	rs4711358	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6p21.31	LEMD2	rs4711358-?	NR	2E-6	(TAG 52:2)	0.17428184	[0.1-0.25] unit decrease	Affymetrix [at least 2500000] (imputed)	N
843	chr6	33833490	33833491	rs4711358	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6p21.31	LEMD2	rs4711358-?	NR	2E-6	(TAG 50:3)	0.17263046	[0.1-0.24] unit decrease	Affymetrix [at least 2500000] (imputed)	N
843	chr6	33834358	33834359	rs1535936	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6p21.31	LEMD2	rs1535936-?	NR	9E-7	(TAG 50:4)	0.1797487	[0.11-0.25] unit decrease	Affymetrix [at least 2500000] (imputed)	N
843	chr6	33834358	33834359	rs1535936	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6p21.31	LEMD2	rs1535936-?	NR	6E-6	(TAG 56:3)	0.16691928	[0.095-0.239] unit decrease	Affymetrix [at least 2500000] (imputed)	N
843	chr6	33834358	33834359	rs1535936	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6p21.31	LEMD2	rs1535936-?	NR	5E-6	(TAG 52:5)	0.16565853	[0.094-0.237] unit decrease	Affymetrix [at least 2500000] (imputed)	N
843	chr6	33834358	33834359	rs1535936	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6p21.31	LEMD2	rs1535936-?	NR	5E-6	(TAG 52:4)	0.16647412	[0.095-0.238] unit decrease	Affymetrix [at least 2500000] (imputed)	N
843	chr6	33837252	33837253	rs1555689	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	6p21.31		rs1555689-?	NR	5E-8				Affymetrix [NR] (imputed)	N
843	chr6	33840666	33840667	rs9348928	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.31		rs9348928-G	0.562	2E-16				Affymetrix [10369434] (imputed)	N
843	chr6	33851172	33851173	rs16869652	22885689	Levinson DF	2012-09-01	Am J Psychiatry	Genome-wide association study of multiplex schizophrenia pedigrees.	Schizophrenia	1,218 European ancestry cases, 990 European ancestry controls, 139 cases, 114 controls	NA	6p21.31	intergenic	rs16869652-?	NR	5E-6	(EA)	1.448	[NR]	Illumina [up to 531195]	N
843	chr6	33852503	33852504	rs744689	31311600	Namjou B	2019-07-17	BMC Med	GWAS and enrichment analyses of non-alcoholic fatty liver disease identify new trait-associated genes and pathways across eMERGE Network.	Aspartate aminotransferase levels in non-alcoholic fatty liver disease	1,075 European ancestry individuals	NA	6p21.31	intergenic	rs744689-T	0.235102	3E-6		0.215189	[0.13-0.3] unit increase	NR [7263501] (imputed)	N
843	chr6	33856616	33856617	rs190732321	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Celiac disease (PheCode 557.1)	1,036 European ancestry cases, 455,312 European ancestry controls	NA	6p21.31		rs190732321-T	0.005759	1E-9		2.15	[1.46-2.84] unit increase	NR [11842647] (imputed)	N
843	chr6	33856787	33856788	rs143738752	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Alcohol consumption x traumatic event in childhood (felt hated by family member) interaction	46,394 European ancestry individuals	NA	6p21.31		rs143738752-?	NR	4E-9		3.4558	[2.31-4.6] unit increase	Affymetrix [NR] (imputed)	N
843	chr6	33858493	33858494	rs9368780	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	6p21.31	LOC100507584	rs9368780-G	NR	3E-6		0.0313285	[0.018-0.044] unit decrease	Illumina [13520550] (imputed)	N
843	chr6	33860842	33860843	rs185355701	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Alanine transaminase levels	134,182 Japanese ancestry individuals	NA	6p21.31	LINC01016	rs185355701-?	NR	3E-8		0.04736	[0.031-0.064] unit increase	Illumina [6108953] (imputed)	N
843	chr6	33862167	33862168	rs12196992	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Ischemic stroke (cardioembolic)	174 Indian ancestry cases, 2,154 Indian ancestry controls	NA	6p21.31		rs12196992-?	NR	6E-6		1.066912	[1.03732279999691-1.09734535508953]	Illumina [up to 7827597] (imputed)	N
843	chr6	33887367	33887368	rs9368783	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6p21.31		rs9368783-?	NR	4E-8				NR [~ 8900000] (imputed)	N
843	chr6	33895405	33895406	rs78117618	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.31		rs78117618-C	0.969	3E-17				Affymetrix [10369434] (imputed)	N
843	chr6	33895804	33895805	rs9469637	31575865	Helgeland O	2019-10-01	Nat Commun	Genome-wide association study reveals dynamic role of genetic variation in infant and early childhood growth.	BMI at birth	9,286 Norwegian ancestry individuals	5,235 Norwegian ancestry individuals	6p21.31	GRM4	rs9469637-G	0.99	4E-7		0.375	[0.23-0.52] unit increase	Illumina [~ 8500000] (imputed)	N
843	chr6	33901723	33901724	rs138986597	34239500	Livingstone KM	2021-06-22	Front Endocrinol (Lausanne)	Discovery Genome-Wide Association Study of Body Composition in 4,386 Adults From the UK Biobank's Pilot Imaging Enhancement Study.	Android bone mass	2,109 White British ancestry male individuals	NA	6p21.31		rs138986597-A	NR	9E-9		11.23	g increase	NR [6137607] (imputed)	N
843	chr6	33924895	33924896	rs9688730	31219150	Ekenberg C	2019-06-13	J Infect Dis	Single nucleotide polymorphisms in HLA alleles are associated with HIV-1 viral load in demographically diverse, ART-naive participants from the START trial.	Pre-treatment viral load in HIV-1 infection	1,398 European ancestry individuals, 572 Black individuals, 418 Hispanic individuals, 13 Asian ancestry individuals, 39 individuals	NA	6p21.31	intergenic	rs9688730-C	0.062	9E-18		0.42	[0.32-0.51] unit decrease	Affymetrix [339439]	N
843	chr6	33925514	33925515	rs181464308	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Serum alkaline phosphatase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	6p21.31	MIR7159, MIR1275	rs181464308-?		9E-9		0.6655	[0.44-0.89] unit decrease	Illumina [31500000] (imputed)	N
843	chr6	33945971	33945972	rs2499760	29970889	Day FR	2018-07-03	Nat Commun	Elucidating the genetic basis of social interaction and isolation.	Regular attendance at a gym or sports club	135,060 European ancestry cases, 317,242 European ancestry controls	NA	6p21.31	ITPR3, MNF1, IP6K3, LEMD2, MLN, LOC100507584, MIR1275, GRM4, HMGA1, C6orf1	rs2499760-C	0.526815	4E-8		0.00528838	[0.0034-0.0072] unit decrease	NR [NR] (imputed)	N
844	chr6	33955500	33955501	rs554962164	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.31	NR	rs554962164-A	0.982	5E-7		1.964	[1.7-2.23]	Illumina [11270530] (imputed)	N
844	chr6	33965433	33965434	rs7745522	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.31	NR	rs7745522-T	0.01916	1E-8	(EIF3E)	0.02471	NR unit increase	Illumina [1671387] (imputed)	N
844	chr6	33966844	33966845	rs72888803	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6p21.31	NR	rs72888803-?	NR	1E-11				Affymetrix [~ 8270000] (imputed)	N
844	chr6	33966844	33966845	rs72888803	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6p21.31	NR	rs72888803-?	NR	2E-12				Affymetrix [~ 8270000] (imputed)	N
844	chr6	33997564	33997565	rs2451377	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.31	NR	rs2451377-A	0.03484	2E-9	(PRDX2)	0.7407	NR unit increase	Illumina [1671387] (imputed)	N
844	chr6	34013545	34013546	rs114370332	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.31	GRM4	rs114370332-T	NR	7E-11		0.0730645	[0.051-0.095] unit increase	Affymetrix [321016] (imputed)	N
844	chr6	34036445	34036446	rs1906953	23727862	Savage SA	2013-06-02	Nat Genet	Genome-wide association study identifies two susceptibility loci for osteosarcoma.	Osteosarcoma	694 European ancestry cases, 2,703 European ancestry controls	247 European ancestry cases, 550 European ancestry controls	6p21.31	GRM4	rs1906953-A	NR	8E-9		1.57	[1.35-1.83]	Illumina [698968]	N
844	chr6	34036687	34036688	rs72888817	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6p21.31	NR	rs72888817-?	NR	3E-10				Affymetrix [~ 8270000] (imputed)	N
844	chr6	34046064	34046065	rs1565356	33045005	Vogelezang S	2020-10-12	PLoS Genet	Novel loci for childhood body mass index and shared heritability with adult cardiometabolic traits.	Childhood body mass index	39,620 European ancestry individuals	NA	6p21.31	GRM4	rs1565356-C	0.92	2E-6		0.071	[0.042-0.1] unit increase	Affymetrix, Illumina [8227808] (imputed)	N
844	chr6	34048415	34048416	rs12206376	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.31	GRM4	rs12206376-A	NR	1E-8		0.0183574	[0.012-0.025] unit increase	Affymetrix [319769] (imputed)	N
844	chr6	34048415	34048416	rs12206376	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.31	GRM4	rs12206376-A	NR	3E-9		0.0190593	[0.013-0.025] unit increase	Affymetrix [319769] (imputed)	N
844	chr6	34048415	34048416	rs12206376	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6p21.31	NR	rs12206376-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
844	chr6	34051094	34051095	rs75286976	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.31	NR	rs75286976-T	0.01045	3E-8	(HAO1)	1.116	NR unit increase	Illumina [1671387] (imputed)	N
844	chr6	34053692	34053693	rs77490194	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Inflammatory skin disease	2,079 European ancestry atopic dermatitis cases, 4,212 European ancestry psoriasis cases, 11,899 European ancestry controls	NA	6p21.31	GRM4	rs77490194-?	NR	3E-6	(Atopic dermatitis)			Affymetrix, Illumina [~ 5200000]	N
844	chr6	34059345	34059346	rs937034	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.31	GRM4	rs937034-G	NR	2E-8		0.0636768	[0.041-0.086] unit increase	Affymetrix [323123] (imputed)	N
844	chr6	34074639	34074640	rs138196264	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6p21.31	NR	rs138196264-?	NR	4E-23				Affymetrix [~ 8270000] (imputed)	N
845	chr6	34094918	34094919	rs115675705	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.31	GRM4	rs115675705-G	NR	6E-52		0.115237	[0.1-0.13] unit increase	Affymetrix [319769] (imputed)	N
845	chr6	34094918	34094919	rs115675705	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.31	GRM4	rs115675705-G	NR	6E-41		0.102967	[0.088-0.118] unit increase	Affymetrix [321169] (imputed)	N
845	chr6	34094918	34094919	rs115675705	33760818	Francis M	2021-03-24	PLoS Genet	Genome-wide association study of fish oil supplementation on lipid traits in 81,246 individuals reveals new gene-diet interaction loci.	HDL levels x fish oil supplementation interaction (2df)	67,544 European ancestry individuals	7,284 European ancestry individuals	6p21.31	GRM4	rs115675705-G	0.0367	1E-19				Affymetrix [7954107] (imputed)	N
845	chr6	34104969	34104970	rs2029462	34390503	Yang G	2021-08-14	Clin Pharmacol Ther	Genome-wide Association Study Identified Chromosome 8 Locus Associated with Medication-related Osteonecrosis of the Jaw.	Bisphosphonate-related osteonecrosis of the jaw	444 European ancestry cases, 4,564 European ancestry controls	NA	6p21.31		rs2029462-T	0.44	4E-6		0.6	[0.49-0.75]	Illumina [126146] (imputed)	N
845	chr6	34106535	34106536	rs2029458	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6p21.31	NR	rs2029458-?	NR	8E-9				Affymetrix [~ 8270000] (imputed)	N
845	chr6	34128062	34128063	rs150556786	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	6p21.31	GRM4	rs150556786-A	0.9977	3E-10		0.1402	[0.097-0.184] unit decrease	Affymetrix [18391927] (imputed)	N
845	chr6	34128062	34128063	rs150556786	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	6p21.31	GRM4	rs150556786-G	0.00217699999999998	9E-11		0.17593043	[0.12-0.23] unit decrease	Affymetrix [93095623] (imputed)	N
845	chr6	34128960	34128961	rs117770268	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	6p21.31	GRM4	rs117770268-T	0.0435	8E-9		0.3563	[0.24-0.48] mmHg decrease	Affymetrix [NR] (imputed)	N
845	chr6	34141289	34141290	rs4711385	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.31	KRT18P9	rs4711385-T	NR	5E-15		0.076758	[0.058-0.096] unit increase	Affymetrix [321016] (imputed)	N
845	chr6	34145565	34145566	rs145071148	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.31	KRT18P9	rs145071148-A	NR	3E-59		0.116113	[0.1-0.13] unit increase	Affymetrix [321114] (imputed)	N
845	chr6	34148996	34148997	rs1187126	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.31	KRT18P9	rs1187126-A	NR	1E-19		0.0348912	[0.027-0.042] unit increase	Affymetrix [319769] (imputed)	N
845	chr6	34148996	34148997	rs1187126	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.31	KRT18P9	rs1187126-A	NR	7E-22		0.0370174	[0.029-0.045] unit increase	Affymetrix [319769] (imputed)	N
845	chr6	34148996	34148997	rs1187126	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.31	KRT18P9	rs1187126-A	NR	1E-33		0.0470103	[0.039-0.055] unit increase	Affymetrix [321114] (imputed)	N
845	chr6	34148996	34148997	rs1187126	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6p21.31	KRT18P9	rs1187126-A	NR	8E-12		0.0288856	[0.021-0.037] unit increase	Affymetrix [321114] (imputed)	N
845	chr6	34148996	34148997	rs1187126	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.31	KRT18P9	rs1187126-A	NR	2E-19		0.0350132	[0.027-0.043] unit increase	Affymetrix [321169] (imputed)	N
845	chr6	34149218	34149219	rs7770957	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.31	KRT18P9	rs7770957-C	NR	2E-10		0.0606933	[0.042-0.079] unit increase	Affymetrix [323123] (imputed)	N
845	chr6	34149218	34149219	rs7770957	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6p21.31	NR	rs7770957-?	NR	4E-11				Affymetrix [~ 8270000] (imputed)	N
845	chr6	34149268	34149269	rs1187123	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.31	KRT18P9	rs1187123-G	NR	3E-9		0.0174555	[0.012-0.023] unit decrease	Affymetrix [321114] (imputed)	N
845	chr6	34149937	34149938	rs76412020	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.31	KRT18P9	rs76412020-C	NR	1E-10		0.0441822	[0.031-0.058] unit increase	Affymetrix [323858] (imputed)	N
845	chr6	34149937	34149938	rs76412020	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.31	KRT18P9	rs76412020-C	NR	6E-12		0.0469082	[0.034-0.06] unit increase	Affymetrix [127266] (imputed)	N
845	chr6	34151394	34151395	rs139599289	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.31	KRT18P9	rs139599289-T	NR	7E-33		0.0733466	[0.061-0.085] unit increase	Affymetrix [319769] (imputed)	N
845	chr6	34151394	34151395	rs139599289	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.31	KRT18P9	rs139599289-T	NR	5E-36		0.0770113	[0.065-0.089] unit increase	Affymetrix [319769] (imputed)	N
845	chr6	34151394	34151395	rs139599289	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.31	KRT18P9	rs139599289-T	NR	1E-32		0.074042	[0.062-0.086] unit increase	Affymetrix [321169] (imputed)	N
845	chr6	34153440	34153441	rs7744288	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6p21.31		rs7744288-?	NR	2E-30				NR [~ 8900000] (imputed)	N
845	chr6	34156443	34156444	rs1776883	27611488	Almoguera B	2016-09-09	Am J Respir Crit Care Med	Identification of Four Novel Loci in Asthma in European American and African American Populations.	Asthma (childhood onset)	1,181 African American allergic asthma child cases, 498 African American non-allergic asthma child cases, 2,993 African American child controls, 998 European American allergic asthma child cases, 182 European American non-allergic asthma child cases, 4,097 European American child controls.	NA	6p21.31	GRM4, HGMA1	rs1776883-?	NR	7E-6	(EA)			Affymetrix, Illumina [NR] (imputed)	N
845	chr6	34156443	34156444	rs1776883	27611488	Almoguera B	2016-09-09	Am J Respir Crit Care Med	Identification of Four Novel Loci in Asthma in European American and African American Populations.	Asthma	819 African American non-allergic asthma cases, 2,218 African American allergic asthma cases 4,360 African American controls, 808 European American non-allergic asthma cases, 1,464 European American allergic asthma cases, 11,975 European American controls	NA	6p21.31	GRM4, HGMA1	rs1776883-?		5E-9	(EA)	0.222	[0.15-0.3] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
845	chr6	34156789	34156790	rs62398145	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6p21.31	NR	rs62398145-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
845	chr6	34156969	34156970	rs1776884	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6p21.31	NR	rs1776884-?	NR	8E-11				Affymetrix [~ 8270000] (imputed)	N
845	chr6	34158342	34158343	rs61736202	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6p21.31	KRT18P9	rs61736202-T	NR	2E-8		0.0512911	[0.033-0.069] unit increase	Affymetrix [321114] (imputed)	N
845	chr6	34159418	34159419	rs6457762	34054925	Cho HW	2021-05-13	Front Genet	A Genome-Wide Association Study of Novel Genetic Variants Associated With Anthropometric Traits in Koreans.	Height	2,603 Korean ancestry males, 2,869 Korean ancestry females	19,571 Korean ancestry males, 37,321 Korean ancestry females	6p21.31	NR	rs6457762-C	0.2032	2E-20	(female)	0.4	[0.32-0.48] unit increase	NR [8056211] (imputed)	N
845	chr6	34160288	34160289	rs1171540913	34054925	Cho HW	2021-05-13	Front Genet	A Genome-Wide Association Study of Novel Genetic Variants Associated With Anthropometric Traits in Koreans.	Height	2,603 Korean ancestry males, 2,869 Korean ancestry females	19,571 Korean ancestry males, 37,321 Korean ancestry females	6p21.31	NR	rs1171540913-G	0.1661	9E-22	(female)	0.45	[0.35-0.55] unit increase	NR [8056211] (imputed)	N
845	chr6	34160944	34160945	rs6457765	34054925	Cho HW	2021-05-13	Front Genet	A Genome-Wide Association Study of Novel Genetic Variants Associated With Anthropometric Traits in Koreans.	Weight	2,603 Korean ancestry males, 2,869 Korean ancestry females	19,571 Korean ancestry males, 37,321 Korean ancestry females	6p21.31	C6orf106	rs6457765-A	0.1704	9E-14	(male)	0.82	[0.6-1.04] unit increase	NR [8056211] (imputed)	N
845	chr6	34160944	34160945	rs6457765	34054925	Cho HW	2021-05-13	Front Genet	A Genome-Wide Association Study of Novel Genetic Variants Associated With Anthropometric Traits in Koreans.	Height	2,603 Korean ancestry males, 2,869 Korean ancestry females	19,571 Korean ancestry males, 37,321 Korean ancestry females	6p21.31	C6orf106	rs6457765-A	0.1704	4E-21	(female)	0.44	[0.34-0.54] unit increase	NR [8056211] (imputed)	N
845	chr6	34161298	34161299	rs56348792	34054925	Cho HW	2021-05-13	Front Genet	A Genome-Wide Association Study of Novel Genetic Variants Associated With Anthropometric Traits in Koreans.	Weight	2,603 Korean ancestry males, 2,869 Korean ancestry females	19,571 Korean ancestry males, 37,321 Korean ancestry females	6p21.31	GRM4	rs56348792-T	0.1705	5E-14	(male)	0.83	[0.61-1.05] unit increase	NR [8056211] (imputed)	N
845	chr6	34161298	34161299	rs56348792	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	6p21.31	KRT18P9	rs56348792-T	0.128341	2E-15		0.027128367	[0.02-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
845	chr6	34162033	34162034	rs7774122	34054925	Cho HW	2021-05-13	Front Genet	A Genome-Wide Association Study of Novel Genetic Variants Associated With Anthropometric Traits in Koreans.	Height	2,603 Korean ancestry males, 2,869 Korean ancestry females	19,571 Korean ancestry males, 37,321 Korean ancestry females	6p21.31	GRM4	rs7774122-A	0.1651	2E-21	(female)	0.45	[0.35-0.55] unit increase	NR [8056211] (imputed)	N
845	chr6	34162033	34162034	rs7774122	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.31	KRT18P9	rs7774122-A	NR	4E-15		0.0331568	[0.025-0.041] unit increase	Affymetrix [321016] (imputed)	N
845	chr6	34163083	34163084	rs79658451	34054925	Cho HW	2021-05-13	Front Genet	A Genome-Wide Association Study of Novel Genetic Variants Associated With Anthropometric Traits in Koreans.	Height	2,603 Korean ancestry males, 2,869 Korean ancestry females	19,571 Korean ancestry males, 37,321 Korean ancestry females	6p21.31	GRM4	rs79658451-C	0.1287	6E-21	(female)	0.49	[0.39-0.59] unit increase	NR [8056211] (imputed)	N
845	chr6	34163240	34163241	rs9469738	34054925	Cho HW	2021-05-13	Front Genet	A Genome-Wide Association Study of Novel Genetic Variants Associated With Anthropometric Traits in Koreans.	Height	2,603 Korean ancestry males, 2,869 Korean ancestry females	19,571 Korean ancestry males, 37,321 Korean ancestry females	6p21.31	GRM4	rs9469738-A	0.1631	2E-21	(female)	0.45	[0.35-0.55] unit increase	NR [8056211] (imputed)	N
845	chr6	34165307	34165308	rs111643014	34054925	Cho HW	2021-05-13	Front Genet	A Genome-Wide Association Study of Novel Genetic Variants Associated With Anthropometric Traits in Koreans.	Height	2,603 Korean ancestry males, 2,869 Korean ancestry females	19,571 Korean ancestry males, 37,321 Korean ancestry females	6p21.31	HMGA1	rs111643014-A	0.128	2E-21	(female)	0.5	[0.4-0.6] unit increase	NR [8056211] (imputed)	N
845	chr6	34165307	34165308	rs111643014	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.31	KRT18P9	rs111643014-A	NR	2E-17		0.0800694	[0.062-0.098] unit increase	Affymetrix [323123] (imputed)	N
845	chr6	34165307	34165308	rs111643014	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	6p21.31	NR	rs111643014-A	0.027617000000000003	5E-15		0.0281302	[0.021-0.035] unit increase	Affymetrix [16582621] (imputed)	N
845	chr6	34165307	34165308	rs111643014	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	6p21.31	NR	rs111643014-A	0.027617000000000003	4E-10		0.0242128	[0.017-0.032] unit increase	Affymetrix [16582614] (imputed)	N
845	chr6	34165720	34165721	rs7742369	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6p21.31	KRT18P9	rs7742369-G	NR	4E-19		0.0362281	[0.028-0.044] unit increase	Affymetrix [321114] (imputed)	N
845	chr6	34165720	34165721	rs7742369	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	6p21.31	NR	rs7742369-G	0.1748	2E-37		0.003858	[0.0033-0.0044] unit increase	Affymetrix [NR] (imputed)	N
845	chr6	34165720	34165721	rs7742369	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	6p21.31	NR	rs7742369-?	NR	4E-14		0.04641337	[0.034-0.058] unit increase	Illumina [34656550] (imputed)	N
845	chr6	34165720	34165721	rs7742369	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.31	KRT18P9	rs7742369-A	0.8255	7E-11		0.0556	[0.039-0.072] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
845	chr6	34165720	34165721	rs7742369	27680694	Horikoshi M	2016-10-13	Nature	Genome-wide associations for birth weight and correlations with adult disease.	Birth weight	133,903 European ancestry individuals, 6,635 African American individuals, 420 Turkish ancestry individuals, 365 Moroccan ancestry individuals, 395 Surinamese ancestry individuals, 840 Chinese ancestry individuals.	9,799 European ancestry individuals, 1,449 Filipino ancestry individuals.	6p21.31	HMGA1	rs7742369-G	0.19	1E-8		0.0268	[0.018-0.036] unit increase	Affymetrix, Illumina [at least 22434434] (imputed)	N
845	chr6	34165720	34165721	rs7742369	20189936	Okada Y	2010-02-26	Hum Mol Genet	A genome-wide association study in 19 633 Japanese subjects identified LHX3-QSOX2 and IGF1 as adult height loci.	Height	19,633 Japanese ancestry individuals	NA	6p21.31	HMGA1	rs7742369-G	0.14	1E-13		0.11	[0.08-0.14] cm increase	Illumina [420885]	N
845	chr6	34168059	34168059	rs200299716	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.31	KRT18P9	rs200299716-TA	NR	2E-16		0.0614622	[0.047-0.076] unit increase	Affymetrix [323858] (imputed)	N
845	chr6	34168059	34168059	rs200299716	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.31	KRT18P9	rs200299716-TA	NR	2E-18		0.065657	[0.051-0.08] unit increase	Affymetrix [127266] (imputed)	N
845	chr6	34168059	34168059	rs200299716	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	6p21.31		rs200299716-TA	0.046416	2E-11		0.035038445	[0.025-0.045] unit increase	Affymetrix [93095623] (imputed)	N
845	chr6	34169073	34169074	rs1187117	34054925	Cho HW	2021-05-13	Front Genet	A Genome-Wide Association Study of Novel Genetic Variants Associated With Anthropometric Traits in Koreans.	Weight	2,603 Korean ancestry males, 2,869 Korean ancestry females	19,571 Korean ancestry males, 37,321 Korean ancestry females	6p21.31	HGMA1	rs1187117-G	0.1661	2E-14	(male)	0.85	[0.63-1.07] unit increase	NR [8056211] (imputed)	N
845	chr6	34169492	34169493	rs114183675	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p21.31	NR	rs114183675-T	0.0364436	5E-17				Affymetrix, Illumina [20825802] (imputed)	N
845	chr6	34169774	34169775	rs1211163	34054925	Cho HW	2021-05-13	Front Genet	A Genome-Wide Association Study of Novel Genetic Variants Associated With Anthropometric Traits in Koreans.	Weight	2,603 Korean ancestry males, 2,869 Korean ancestry females	19,571 Korean ancestry males, 37,321 Korean ancestry females	6p21.31	HGMA1	rs1211163-A	0.1661	2E-14	(male)	0.85	[0.63-1.07] unit increase	NR [8056211] (imputed)	N
845	chr6	34172054	34172055	rs1187115	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	6p21.31		rs1187115-A	NR	6E-38		0.0425	[0.036-0.049] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
845	chr6	34172054	34172055	rs1187115	34054925	Cho HW	2021-05-13	Front Genet	A Genome-Wide Association Study of Novel Genetic Variants Associated With Anthropometric Traits in Koreans.	Weight	2,603 Korean ancestry males, 2,869 Korean ancestry females	19,571 Korean ancestry males, 37,321 Korean ancestry females	6p21.31	HGMA1	rs1187115-C	0.1604	2E-15	(male)	0.89	[0.67-1.11] unit increase	NR [8056211] (imputed)	N
845	chr6	34172054	34172055	rs1187115	34054925	Cho HW	2021-05-13	Front Genet	A Genome-Wide Association Study of Novel Genetic Variants Associated With Anthropometric Traits in Koreans.	Height	2,603 Korean ancestry males, 2,869 Korean ancestry females	19,571 Korean ancestry males, 37,321 Korean ancestry females	6p21.31	HMGA1	rs1187115-C	0.1604	7E-21	(female)	0.45	[0.35-0.55] unit increase	NR [8056211] (imputed)	N
845	chr6	34173329	34173330	rs76376137	31589552	Lind L	2019-10-07	Metab Syndr Relat Disord	Genome-Wide Association Study of the Metabolic Syndrome in UK Biobank.	Metabolic syndrome	291,107 European ancestry individuals	NA	6p21.31	HMGA1	rs76376137-G	0.050549	1E-9		0.0820329	[0.053-0.111] unit increase	Affymetrix [9463307] (imputed)	N
845	chr6	34173329	34173330	rs76376137	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	6p21.31		rs76376137-?	NR	3E-9				NR [~ 8900000] (imputed)	N
845	chr6	34173329	34173330	rs76376137	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.31	NR	rs76376137-T	NR	5E-11		0.058	unit increase	Affymetrix [at least 7091467] (imputed)	N
845	chr6	34173329	34173330	rs76376137	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.31	NR	rs76376137-T	0.957	2E-9	(EA)	0.056	unit increase	Affymetrix [at least 7091467] (imputed)	N
845	chr6	34174907	34174908	rs1776877	34054925	Cho HW	2021-05-13	Front Genet	A Genome-Wide Association Study of Novel Genetic Variants Associated With Anthropometric Traits in Koreans.	Weight	2,603 Korean ancestry males, 2,869 Korean ancestry females	19,571 Korean ancestry males, 37,321 Korean ancestry females	6p21.31	NR	rs1776877-G	0.1659	1E-14	(male)	0.86	[0.64-1.08] unit increase	NR [8056211] (imputed)	N
845	chr6	34174907	34174908	rs1776877	34054925	Cho HW	2021-05-13	Front Genet	A Genome-Wide Association Study of Novel Genetic Variants Associated With Anthropometric Traits in Koreans.	Height	2,603 Korean ancestry males, 2,869 Korean ancestry females	19,571 Korean ancestry males, 37,321 Korean ancestry females	6p21.31	HMGA1	rs1776877-G	0.1659	3E-21	(female)	0.45	[0.35-0.55] unit increase	NR [8056211] (imputed)	N
845	chr6	34177509	34177510	rs116251328	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.31	CYCSP55	rs116251328-A	NR	1E-38		0.118665	[0.1-0.14] unit increase	Affymetrix [319769] (imputed)	N
845	chr6	34177509	34177510	rs116251328	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.31	CYCSP55	rs116251328-A	NR	7E-10		0.062818	[0.043-0.083] unit increase	Affymetrix [323858] (imputed)	N
845	chr6	34177509	34177510	rs116251328	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.31	CYCSP55	rs116251328-A	NR	5E-42		0.123946	[0.11-0.14] unit increase	Affymetrix [319769] (imputed)	N
845	chr6	34177509	34177510	rs116251328	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.31	CYCSP55	rs116251328-A	NR	9E-11		0.0660616	[0.046-0.086] unit increase	Affymetrix [127266] (imputed)	N
845	chr6	34177509	34177510	rs116251328	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.31	CYCSP55	rs116251328-A	NR	4E-44		0.128402	[0.11-0.15] unit increase	Affymetrix [321114] (imputed)	N
845	chr6	34177509	34177510	rs116251328	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	6p21.31	CYCSP55	rs116251328-A	NR	5E-8		0.0570612	[0.037-0.078] unit decrease	Affymetrix [323858] (imputed)	N
845	chr6	34177509	34177510	rs116251328	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.31	CYCSP55	rs116251328-A	NR	9E-38		0.118598	[0.1-0.14] unit increase	Affymetrix [321169] (imputed)	N
845	chr6	34177509	34177510	rs116251328	31649266	Gallagher CS	2019-10-24	Nat Commun	Genome-wide association and epidemiological analyses reveal common genetic origins between uterine leiomyomata and endometriosis.	Uterine fibroids	20,406 European ancestry cases, 223,918 European ancestry controls	15,068 European ancestry cases, 43,587 European ancestry controls	6p21.31	GRM4, HMGA1	rs116251328-A	0.02	3E-8		1.15	[1.09-1.21]	Affymetrix, Illumina [8662096] (imputed)	N
845	chr6	34177852	34177853	rs185139895	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large HDL	115,082 European ancestry individuals	NA	6p21.31		rs185139895-G	0.956091	2E-9		0.0549463	[0.037-0.073] unit increase	NR [11722792] (imputed)	N
845	chr6	34177852	34177853	rs185139895	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	6p21.31		rs185139895-G	0.956091	1E-9		0.0550427	[0.037-0.073] unit increase	NR [11722792] (imputed)	N
845	chr6	34177852	34177853	rs185139895	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	6p21.31		rs185139895-G	0.956091	1E-12		0.063278	[0.046-0.081] unit increase	NR [11722792] (imputed)	N
845	chr6	34177852	34177853	rs185139895	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	6p21.31		rs185139895-G	0.956091	1E-12		0.063243	[0.046-0.081] unit increase	NR [11722792] (imputed)	N
845	chr6	34177852	34177853	rs185139895	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	6p21.31		rs185139895-A	NR	6E-16		0.0458	[0.035-0.057] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
845	chr6	34177852	34177853	rs185139895	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	6p21.31	CYCSP55	rs185139895-A	NR	3E-10		0.0451945	[0.031-0.059] unit decrease	Affymetrix [321788] (imputed)	N
845	chr6	34177852	34177853	rs185139895	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	6p21.31	CYCSP55	rs185139895-A	NR	2E-10		0.0501639	[0.035-0.066] unit decrease	Affymetrix [323858] (imputed)	N
845	chr6	34177852	34177853	rs185139895	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	6p21.31	HMGA1	rs185139895-G	0.956182	1E-18		0.0428684	[0.033-0.052] unit decrease	Affymetrix [NR] (imputed)	N
845	chr6	34177852	34177853	rs185139895	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	6p21.31	intergenic	rs185139895-A	0.0442	7E-10		0.05333902	[0.036-0.07] unit increase	Affymetrix [~ 2500000] (imputed)	N
845	chr6	34178557	34178558	rs10807136	34054925	Cho HW	2021-05-13	Front Genet	A Genome-Wide Association Study of Novel Genetic Variants Associated With Anthropometric Traits in Koreans.	Height	2,603 Korean ancestry males, 2,869 Korean ancestry females	19,571 Korean ancestry males, 37,321 Korean ancestry females	6p21.31	HMGA1	rs10807136-T	0.157	3E-21	(female)	0.46	[0.36-0.56] unit increase	NR [8056211] (imputed)	N
845	chr6	34178557	34178558	rs10807136	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	6p21.31	HMGA1	rs10807136-T	0.1197	3E-9		0.003	[0.0022-0.0038] unit decrease	Affymetrix [15275733] (imputed)	N
845	chr6	34178592	34178593	rs138997002	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	6p21.31		rs138997002-T	0.117319346	2E-13		0.10681428	[0.078-0.135] unit decrease	Illumina [13429769] (imputed)	N
845	chr6	34178592	34178593	rs138997002	34054925	Cho HW	2021-05-13	Front Genet	A Genome-Wide Association Study of Novel Genetic Variants Associated With Anthropometric Traits in Koreans.	Height	2,603 Korean ancestry males, 2,869 Korean ancestry females	19,571 Korean ancestry males, 37,321 Korean ancestry females	6p21.31	HMGA1	rs138997002-T	0.1282	2E-21	(female)	0.5	[0.4-0.6] unit increase	NR [8056211] (imputed)	N
845	chr6	34178763	34178764	rs28673163	34054925	Cho HW	2021-05-13	Front Genet	A Genome-Wide Association Study of Novel Genetic Variants Associated With Anthropometric Traits in Koreans.	Weight	2,603 Korean ancestry males, 2,869 Korean ancestry females	19,571 Korean ancestry males, 37,321 Korean ancestry females	6p21.31	NR	rs28673163-A	0.1579	8E-15	(male)	0.88	[0.66-1.1] unit increase	NR [8056211] (imputed)	N
845	chr6	34178763	34178764	rs28673163	34054925	Cho HW	2021-05-13	Front Genet	A Genome-Wide Association Study of Novel Genetic Variants Associated With Anthropometric Traits in Koreans.	Height	2,603 Korean ancestry males, 2,869 Korean ancestry females	19,571 Korean ancestry males, 37,321 Korean ancestry females	6p21.31	NR	rs28673163-A	0.1579	1E-21	(female)	0.46	[0.36-0.56] unit increase	NR [8056211] (imputed)	N
845	chr6	34178763	34178764	rs28673163	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.31	CYCSP55	rs28673163-A	NR	1E-19		0.0424728	[0.033-0.052] unit increase	Affymetrix [323123] (imputed)	N
845	chr6	34179117	34179118	rs1044956108	34054925	Cho HW	2021-05-13	Front Genet	A Genome-Wide Association Study of Novel Genetic Variants Associated With Anthropometric Traits in Koreans.	Height	2,603 Korean ancestry males, 2,869 Korean ancestry females	19,571 Korean ancestry males, 37,321 Korean ancestry females	6p21.31	NR	rs1044956108-GT	0.153	5E-22	(female)	0.47	[0.37-0.57] unit increase	NR [8056211] (imputed)	N
845	chr6	34179389	34179390	rs6913361	34054925	Cho HW	2021-05-13	Front Genet	A Genome-Wide Association Study of Novel Genetic Variants Associated With Anthropometric Traits in Koreans.	Height	2,603 Korean ancestry males, 2,869 Korean ancestry females	19,571 Korean ancestry males, 37,321 Korean ancestry females	6p21.31	CYCSP55, KRT18P9	rs6913361-A	0.157	3E-21	(female)	0.46	[0.36-0.56] unit increase	NR [8056211] (imputed)	N
845	chr6	34179389	34179390	rs6913361	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	6p21.31	GRM4, HMGA1	rs6913361-G	0.852	3E-14	(Japanese)	0.038	[0.028-0.048] unit decrease	Illumina [6108953] (imputed)	N
845	chr6	34180296	34180297	rs144100226	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	6p21.31	HMGA1	rs144100226-T	0.0367	5E-11		0.0059	[0.0039-0.0079] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
845	chr6	34180296	34180297	rs144100226	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	6p21.31	HMGA1	rs144100226-T	0.0386	1E-10		0.006	[0.0038-0.0082] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
845	chr6	34180296	34180297	rs144100226	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	315,284 European ancestry male individuals	NA	6p21.31	NR	rs144100226-T	0.0448	2E-80		0.0907	[0.081-0.1] unit increase	NR [~ 27400000] (imputed)	N
845	chr6	34181994	34181995	rs9357174	34054925	Cho HW	2021-05-13	Front Genet	A Genome-Wide Association Study of Novel Genetic Variants Associated With Anthropometric Traits in Koreans.	Height	2,603 Korean ancestry males, 2,869 Korean ancestry females	19,571 Korean ancestry males, 37,321 Korean ancestry females	6p21.31	HMGA1	rs9357174-C	0.1661	2E-21	(female)	0.45	[0.35-0.55] unit increase	NR [8056211] (imputed)	N
845	chr6	34183025	34183026	rs10807137	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.31		rs10807137-C	0.175	5E-15				Affymetrix [10369434] (imputed)	N
845	chr6	34183025	34183026	rs10807137	34054925	Cho HW	2021-05-13	Front Genet	A Genome-Wide Association Study of Novel Genetic Variants Associated With Anthropometric Traits in Koreans.	Weight	2,603 Korean ancestry males, 2,869 Korean ancestry females	19,571 Korean ancestry males, 37,321 Korean ancestry females	6p21.31	HGMA1	rs10807137-C	0.1664	3E-15	(male)	0.87	[0.65-1.09] unit increase	NR [8056211] (imputed)	N
845	chr6	34183025	34183026	rs10807137	34054925	Cho HW	2021-05-13	Front Genet	A Genome-Wide Association Study of Novel Genetic Variants Associated With Anthropometric Traits in Koreans.	Height	2,603 Korean ancestry males, 2,869 Korean ancestry females	19,571 Korean ancestry males, 37,321 Korean ancestry females	6p21.31	HMGA1	rs10807137-C	0.1664	1E-21	(female)	0.45	[0.35-0.55] unit increase	NR [8056211] (imputed)	N
845	chr6	34183025	34183026	rs10807137	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.31	CYCSP55	rs10807137-C	NR	3E-49		0.0551844	[0.048-0.063] unit increase	Affymetrix [321114] (imputed)	N
845	chr6	34183025	34183026	rs10807137	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	6p21.31	CYCSP55	rs10807137-T	0.825083	1E-16		0.024641449	[0.019-0.03] unit increase	Affymetrix [93095623] (imputed)	N
845	chr6	34183056	34183057	rs1592269	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	6p21.31		rs1592269-A	NR	2E-82		0.0584	[0.053-0.064] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
845	chr6	34183056	34183057	rs1592269	34054925	Cho HW	2021-05-13	Front Genet	A Genome-Wide Association Study of Novel Genetic Variants Associated With Anthropometric Traits in Koreans.	Weight	2,603 Korean ancestry males, 2,869 Korean ancestry females	19,571 Korean ancestry males, 37,321 Korean ancestry females	6p21.31	HGMA1	rs1592269-G	0.1583	1E-14	(male)	0.87	[0.65-1.09] unit increase	NR [8056211] (imputed)	N
845	chr6	34183056	34183057	rs1592269	34054925	Cho HW	2021-05-13	Front Genet	A Genome-Wide Association Study of Novel Genetic Variants Associated With Anthropometric Traits in Koreans.	Height	2,603 Korean ancestry males, 2,869 Korean ancestry females	19,571 Korean ancestry males, 37,321 Korean ancestry females	6p21.31	NR	rs1592269-G	0.1583	5E-22	(female)	0.46	[0.36-0.56] unit increase	NR [8056211] (imputed)	N
845	chr6	34183056	34183057	rs1592269	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.31	CYCSP55	rs1592269-G	NR	3E-10		0.0410652	[0.028-0.054] unit increase	Affymetrix [321114] (imputed)	N
845	chr6	34183056	34183057	rs1592269	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6p21.31	CYCSP55	rs1592269-G	NR	2E-11		0.0474332	[0.034-0.061] unit increase	Affymetrix [321114] (imputed)	N
845	chr6	34183056	34183057	rs1592269	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.31	CYCSP55	rs1592269-G	NR	5E-21		0.0606777	[0.048-0.073] unit increase	Affymetrix [321016] (imputed)	N
845	chr6	34183056	34183057	rs1592269	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.31	CYCSP55	rs1592269-G	NR	2E-18		0.0613398	[0.048-0.075] unit increase	Affymetrix [323123] (imputed)	N
845	chr6	34184937	34184938	rs10807138	34054925	Cho HW	2021-05-13	Front Genet	A Genome-Wide Association Study of Novel Genetic Variants Associated With Anthropometric Traits in Koreans.	Height	2,603 Korean ancestry males, 2,869 Korean ancestry females	19,571 Korean ancestry males, 37,321 Korean ancestry females	6p21.31	HMGA1	rs10807138-G	0.182	3E-18	(female)	0.4	[0.3-0.5] unit increase	NR [8056211] (imputed)	N
845	chr6	34184937	34184938	rs10807138	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	6p21.31	NR	rs10807138-A	0.795658	6E-10		0.074957	[0.051-0.099] unit decrease	Affymetrix [21375087] (imputed)	N
845	chr6	34185748	34185749	rs2797963	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	163,835 East Asian ancestry individuals	NA	6p21.31		rs2797963-T	0.864595	7E-12		0.0319721	[0.023-0.041] unit decrease	Illumina [13479178] (imputed)	N
845	chr6	34185748	34185749	rs2797963	34054925	Cho HW	2021-05-13	Front Genet	A Genome-Wide Association Study of Novel Genetic Variants Associated With Anthropometric Traits in Koreans.	Height	2,603 Korean ancestry males, 2,869 Korean ancestry females	19,571 Korean ancestry males, 37,321 Korean ancestry females	6p21.31	HMGA1	rs2797963-C	0.1527	1E-21	(female)	0.47	[0.37-0.57] unit increase	NR [8056211] (imputed)	N
845	chr6	34185748	34185749	rs2797963	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.31	CYCSP55	rs2797963-C	NR	7E-10		0.0354501	[0.024-0.047] unit increase	Affymetrix [323858] (imputed)	N
845	chr6	34185748	34185749	rs2797963	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.31	CYCSP55	rs2797963-C	NR	6E-12		0.0394884	[0.028-0.051] unit increase	Affymetrix [127266] (imputed)	N
845	chr6	34185754	34185755	rs2797964	34054925	Cho HW	2021-05-13	Front Genet	A Genome-Wide Association Study of Novel Genetic Variants Associated With Anthropometric Traits in Koreans.	Weight	2,603 Korean ancestry males, 2,869 Korean ancestry females	19,571 Korean ancestry males, 37,321 Korean ancestry females	6p21.31	HGMA1	rs2797964-C	0.1633	1E-14	(male)	0.86	[0.64-1.08] unit increase	NR [8056211] (imputed)	N
845	chr6	34185754	34185755	rs2797964	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.31	CYCSP55	rs2797964-C	NR	5E-38		0.0638019	[0.054-0.074] unit increase	Affymetrix [319769] (imputed)	N
845	chr6	34185754	34185755	rs2797964	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.31	CYCSP55	rs2797964-C	NR	5E-43		0.0680557	[0.058-0.078] unit increase	Affymetrix [319769] (imputed)	N
845	chr6	34185754	34185755	rs2797964	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.31	CYCSP55	rs2797964-C	NR	3E-43		0.0690911	[0.059-0.079] unit increase	Affymetrix [321169] (imputed)	N
845	chr6	34185959	34185960	rs150459394	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.31	CYCSP55	rs150459394-T	NR	2E-57		0.0895992	[0.079-0.101] unit increase	Affymetrix [321114] (imputed)	N
845	chr6	34185959	34185960	rs150459394	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6p21.31	CYCSP55	rs150459394-T	NR	6E-10		0.0380469	[0.026-0.05] unit increase	Affymetrix [321114] (imputed)	N
845	chr6	34185963	34185964	rs9461964	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6p21.31	NR	rs9461964-?	NR	2E-12				Affymetrix [~ 8270000] (imputed)	N
845	chr6	34185963	34185964	rs9461964	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6p21.31	NR	rs9461964-?	NR	4E-14				Affymetrix [~ 8270000] (imputed)	N
845	chr6	34187331	34187332	rs144229896	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	6p21.31		rs144229896-?	NR	7E-24				NR [~ 8900000] (imputed)	N
845	chr6	34187365	34187366	rs114088263	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	6p21.31	NR	rs114088263-C	0.046052	4E-10		0.027403	[0.019-0.036] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
845	chr6	34187475	34187475	rs201536174	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	6p21.31	CYCSP55	rs201536174-TAAG	0.047634	1E-30		0.058809716	[0.049-0.069] unit increase	Affymetrix [93095623] (imputed)	N
845	chr6	34187723	34187724	rs28539536	34054925	Cho HW	2021-05-13	Front Genet	A Genome-Wide Association Study of Novel Genetic Variants Associated With Anthropometric Traits in Koreans.	Height	2,603 Korean ancestry males, 2,869 Korean ancestry females	19,571 Korean ancestry males, 37,321 Korean ancestry females	6p21.31	HMGA1	rs28539536-T	0.1276	4E-21	(female)	0.5	[0.4-0.6] unit increase	NR [8056211] (imputed)	N
845	chr6	34188466	34188467	rs9469745	34054925	Cho HW	2021-05-13	Front Genet	A Genome-Wide Association Study of Novel Genetic Variants Associated With Anthropometric Traits in Koreans.	Weight	2,603 Korean ancestry males, 2,869 Korean ancestry females	19,571 Korean ancestry males, 37,321 Korean ancestry females	6p21.31	HGMA1	rs9469745-G	0.1651	3E-14	(male)	0.84	[0.62-1.06] unit increase	NR [8056211] (imputed)	N
845	chr6	34188466	34188467	rs9469745	34054925	Cho HW	2021-05-13	Front Genet	A Genome-Wide Association Study of Novel Genetic Variants Associated With Anthropometric Traits in Koreans.	Height	2,603 Korean ancestry males, 2,869 Korean ancestry females	19,571 Korean ancestry males, 37,321 Korean ancestry females	6p21.31	HMGA1	rs9469745-G	0.1651	3E-21	(female)	0.45	[0.35-0.55] unit increase	NR [8056211] (imputed)	N
845	chr6	34188865	34188866	rs12214804	34054925	Cho HW	2021-05-13	Front Genet	A Genome-Wide Association Study of Novel Genetic Variants Associated With Anthropometric Traits in Koreans.	Weight	2,603 Korean ancestry males, 2,869 Korean ancestry females	19,571 Korean ancestry males, 37,321 Korean ancestry females	6p21.31	HMGA1	rs12214804-C	0.165	3E-14	(male)	0.84	[0.62-1.06] unit increase	NR [8056211] (imputed)	N
845	chr6	34188865	34188866	rs12214804	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	6p21.31	NR	rs12214804-?	NR	9E-20		0.05899843	[0.046-0.072] unit decrease	Illumina [34656550] (imputed)	N
845	chr6	34188865	34188866	rs12214804	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	6p21.31	NR	rs12214804-C	0.09	8E-43		0.045	[0.039-0.051] unit increase	Affymetrix [2446094] (imputed)	N
845	chr6	34188865	34188866	rs12214804	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	6p21.31	NR	rs12214804-C	0.09	5E-8				Affymetrix [2446094] (imputed)	N
845	chr6	34188865	34188866	rs12214804	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	6p21.31	HMGA1	rs12214804-T	0.92	2E-49		0.084	[0.072-0.096] unit decrease	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
845	chr6	34188891	34188892	rs9689096	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.31	CYCSP55	rs9689096-C	NR	2E-81		0.111967	[0.1-0.12] unit increase	Affymetrix [321114] (imputed)	N
845	chr6	34188891	34188892	rs9689096	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6p21.31	CYCSP55	rs9689096-C	NR	1E-18		0.0563823	[0.044-0.069] unit increase	Affymetrix [321114] (imputed)	N
845	chr6	34188891	34188892	rs9689096	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	Waist circumference	291,107 British ancestry individuals	NA	6p21.31	intergenic	rs9689096-C	0.0636817	8E-9		0.370713	[0.24-0.5] unit increase	Affymetrix [9463307] (imputed)	N
845	chr6	34188891	34188892	rs9689096	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	Triglyceride levels	291,107 British ancestry individuals	NA	6p21.31	intergenic	rs9689096-C	0.0636817	4E-6		0.019882	[0.011-0.028] unit increase	Affymetrix [9463307] (imputed)	N
845	chr6	34188891	34188892	rs9689096	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	High density lipoprotein cholesterol levels	291,107 British ancestry individuals	NA	6p21.31	intergenic	rs9689096-C	0.0636817	5E-15		0.014666	[0.011-0.018] unit decrease	Affymetrix [9463307] (imputed)	N
845	chr6	34188891	34188892	rs9689096	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	6p21.31	HMGA1	rs9689096-A	0.9374	2E-13		0.036	[0.026-0.046] unit decrease	Affymetrix [19819130] (imputed)	N
845	chr6	34188891	34188892	rs9689096	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	6p21.31	HMGA1	rs9689096-A	0.9374	2E-13		0.0359	[0.026-0.046] unit decrease	Affymetrix [19819130] (imputed)	N
845	chr6	34188891	34188892	rs9689096	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	6p21.31		rs9689096-?	NR	3E-11				NR [~ 8900000] (imputed)	N
845	chr6	34189611	34189612	rs10947487	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	6p21.31	GRM4, HMGA1	rs10947487-G	0.97	1E-13		0.035	[0.025-0.045] unit decrease	Illumina [6108953] (imputed)	N
845	chr6	34190103	34190104	rs75104038	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.31	CYCSP55	rs75104038-A	NR	6E-67		0.102383	[0.091-0.114] unit increase	Affymetrix [321114] (imputed)	N
845	chr6	34190103	34190104	rs75104038	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6p21.31	CYCSP55	rs75104038-A	NR	2E-18		0.056899	[0.044-0.07] unit increase	Affymetrix [321114] (imputed)	N
845	chr6	34190103	34190104	rs75104038	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	6p21.31	HMGA1	rs75104038-A	0.059732	4E-16		0.044913	[0.034-0.056] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
845	chr6	34191877	34191878	rs7753429	34054925	Cho HW	2021-05-13	Front Genet	A Genome-Wide Association Study of Novel Genetic Variants Associated With Anthropometric Traits in Koreans.	Height	2,603 Korean ancestry males, 2,869 Korean ancestry females	19,571 Korean ancestry males, 37,321 Korean ancestry females	6p21.31	HMGA1	rs7753429-C	0.1518	1E-22	(female)	0.48	[0.38-0.58] unit increase	NR [8056211] (imputed)	N
845	chr6	34192035	34192036	rs114760566	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	6p21.31		rs114760566-C	0.954866	7E-13		0.0627518	[0.046-0.08] unit increase	NR [11722792] (imputed)	N
845	chr6	34192035	34192036	rs114760566	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in HDL	115,082 European ancestry individuals	NA	6p21.31		rs114760566-C	0.954866	4E-11		0.0591371	[0.042-0.077] unit increase	NR [11722792] (imputed)	N
845	chr6	34192035	34192036	rs114760566	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large HDL	115,082 European ancestry individuals	NA	6p21.31		rs114760566-C	0.954866	1E-12		0.0624228	[0.045-0.08] unit increase	NR [11722792] (imputed)	N
845	chr6	34192035	34192036	rs114760566	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in HDL	115,082 European ancestry individuals	NA	6p21.31		rs114760566-C	0.954866	1E-10		0.0581932	[0.041-0.076] unit increase	NR [11722792] (imputed)	N
845	chr6	34192035	34192036	rs114760566	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	6p21.31		rs114760566-C	0.954869	2E-12		0.0624595	[0.045-0.08] unit decrease	NR [11722792] (imputed)	N
845	chr6	34192035	34192036	rs114760566	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	6p21.31		rs114760566-C	0.954866	8E-13		0.0624617	[0.045-0.08] unit increase	NR [11722792] (imputed)	N
845	chr6	34192035	34192036	rs114760566	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.31	CYCSP55	rs114760566-A	NR	2E-66		0.116435	[0.1-0.13] unit increase	Affymetrix [319769] (imputed)	N
845	chr6	34192035	34192036	rs114760566	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	6p21.31	HMGA1	rs114760566-C	0.95502	4E-27		0.0511747	[0.042-0.06] unit increase	Affymetrix [NR] (imputed)	N
845	chr6	34192035	34192036	rs114760566	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	6p21.31	RPS10-NUDT3	rs114760566-?	NR	1E-12		0.045	[0.034-0.056] unit increase	Affymetrix [5701386] (imputed)	N
845	chr6	34192035	34192036	rs114760566	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6p21.31	NR	rs114760566-?	NR	6E-86				Affymetrix [~ 8270000] (imputed)	N
845	chr6	34192035	34192036	rs114760566	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	6p21.31		rs114760566-?	NR	1E-82				NR [~ 8900000] (imputed)	N
845	chr6	34192035	34192036	rs114760566	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	6p21.31	NR	rs114760566-A	0.0432	9E-82		0.0932	[0.084-0.103] unit increase	NR [~ 27400000] (imputed)	N
845	chr6	34192035	34192036	rs114760566	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	6p21.31	NA	rs114760566-A	0.0432	3E-44		0.0674	[0.058-0.077] unit increase	NR [~ 27400000] (imputed)	N
845	chr6	34192035	34192036	rs114760566	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	6p21.31	NR	rs114760566-A	0.0432	3E-44		0.0674	[0.058-0.077] unit increase	NR [~ 27400000] (imputed)	N
845	chr6	34194091	34194092	rs1776898	34054925	Cho HW	2021-05-13	Front Genet	A Genome-Wide Association Study of Novel Genetic Variants Associated With Anthropometric Traits in Koreans.	Weight	2,603 Korean ancestry males, 2,869 Korean ancestry females	19,571 Korean ancestry males, 37,321 Korean ancestry females	6p21.31	HGMA1	rs1776898-C	0.1652	3E-14	(male)	0.84	[0.62-1.06] unit increase	NR [8056211] (imputed)	N
845	chr6	34194091	34194092	rs1776898	34054925	Cho HW	2021-05-13	Front Genet	A Genome-Wide Association Study of Novel Genetic Variants Associated With Anthropometric Traits in Koreans.	Height	2,603 Korean ancestry males, 2,869 Korean ancestry females	19,571 Korean ancestry males, 37,321 Korean ancestry females	6p21.31	NR	rs1776898-C	0.1652	3E-21	(female)	0.45	[0.35-0.55] unit increase	NR [8056211] (imputed)	N
845	chr6	34194267	34194268	rs78114378	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6p21.31	NR	rs78114378-?	NR	3E-97				Affymetrix [~ 8270000] (imputed)	N
845	chr6	34194865	34194866	rs1759645	31681408	Yang XL	2019-10-11	Front Genet	Three Novel Loci for Infant Head Circumference Identified by a Joint Association Analysis.	Birth weight (MTAG)	up to 182,902 European ancestry individuals	NA	6p21.31	NR	rs1759645-T	0.84	1E-9		0.030916274	[0.021-0.041] unit decrease	NR [1977400] (imputed)	N
845	chr6	34194865	34194866	rs1759645	31681408	Yang XL	2019-10-11	Front Genet	Three Novel Loci for Infant Head Circumference Identified by a Joint Association Analysis.	Birth length (MTAG)	up to 182,902 European ancestry individuals	NA	6p21.31	NR	rs1759645-T	0.836	7E-10		0.048504315	[0.033-0.064] unit decrease	NR [1977400] (imputed)	N
845	chr6	34194865	34194866	rs1759645	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	6p21.31	NR	rs1759645-?	NR	1E-14		0.04788681	[0.036-0.06] unit decrease	Illumina [34656550] (imputed)	N
845	chr6	34194865	34194866	rs1759645	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.31	CYCSL1, HMGA1	rs1759645-C	0.20420000000000005	8E-11		0.0311	[0.022-0.041] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
845	chr6	34194865	34194866	rs1759645	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6p21.31	CYCSL1, HMGA1	rs1759645-C	0.20420000000000005	1E-6		0.0271	[0.016-0.038] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
845	chr6	34194865	34194866	rs1759645	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.31	CYCSL1, HMGA1	rs1759645-?	0.20420000000000005	1E-9				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
845	chr6	34194865	34194866	rs1759645	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p21.31	HMGA1	rs1759645-T	0.8454	9E-9	(EA)	0.0293	[0.019-0.039] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
845	chr6	34194865	34194866	rs1759645	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p21.31	HMGA1	rs1759645-T	0.8454	2E-6	(EA,men)	0.0348	[0.02-0.049] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
845	chr6	34194865	34194866	rs1759645	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	6p21.31	HMGA1	rs1759645-C	0.16	5E-15		1.29	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
845	chr6	34195010	34195011	rs1776897	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	6p21.31	NR	rs1776897-?	NR	9E-20		0.05817815	[0.046-0.071] unit decrease	Illumina [34656550] (imputed)	N
845	chr6	34195010	34195011	rs1776897	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6p21.31		rs1776897-?	NR	2E-235				NR [~ 8900000] (imputed)	N
845	chr6	34195010	34195011	rs1776897	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in non-smokers	77,113 European ancestry women, 47,319 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	6p21.31	HMGA1	rs1776897-T	0.8414	6E-12	(women)	0.0636	[0.046-0.082] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
845	chr6	34195010	34195011	rs1776897	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in non-smokers	77,113 European ancestry women, 47,319 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	6p21.31	HMGA1	rs1776897-T	0.8414	2E-14		0.0558	[0.041-0.07] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
845	chr6	34195010	34195011	rs1776897	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	6p21.31	HMGA1	rs1776897-T	0.8414	2E-16				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
845	chr6	34195010	34195011	rs1776897	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	6p21.31	HMGA1	rs1776897-T	0.8414	1E-13	(women)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
845	chr6	34195010	34195011	rs1776897	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	6p21.31	HMGA1	rs1776897-T	0.8414	7E-6	(men)	0.0423	[0.024-0.061] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
845	chr6	34195010	34195011	rs1776897	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	6p21.31	HMGA1	rs1776897-T	0.8414	7E-17		0.0536	[0.041-0.066] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
845	chr6	34195010	34195011	rs1776897	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	6p21.31	HMGA1	rs1776897-T	0.8414	6E-15	(women)	0.0647	[0.048-0.081] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
845	chr6	34195010	34195011	rs1776897	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p21.31	HMGA1	rs1776897-G	0.1298	2E-7	(women)	0.0431	[0.027-0.059] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
845	chr6	34195010	34195011	rs1776897	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p21.31	HMGA1	rs1776897-G	0.0812	7E-9	(EA, women)	0.052	[0.034-0.07] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
845	chr6	34195010	34195011	rs1776897	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p21.31	HMGA1	rs1776897-T	0.9193	8E-7	(EA, men)	0.0476	[0.029-0.066] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
845	chr6	34195010	34195011	rs1776897	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p21.31	HMGA1	rs1776897-T	0.9193	6E-20	(EA)	0.0613	[0.048-0.074] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
845	chr6	34195010	34195011	rs1776897	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p21.31	HMGA1	rs1776897-T	0.9193	2E-16	(EA,women)	0.0715	[0.054-0.089] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
845	chr6	34195010	34195011	rs1776897	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	6p21.31	HMGA1	rs1776897-T	0.88	2E-29		0.088	[0.07-0.106] unit decrease	Affymetrix, Illumina [2704730] (imputed)	N
845	chr6	34195010	34195011	rs1776897	20397748	Liu JZ	2010-04-01	Twin Res Hum Genet	Genome-wide association study of height and body mass index in Australian twin families.	Height	11,536 European ancestry individuals	NA	6p21.31	HMGA1	rs1776897-T	0.49	7E-6		0.11	[0.04-0.18] SD decrease	Illumina [559712] (imputed)	N
845	chr6	34195010	34195011	rs1776897	19343178	Soranzo N	2009-04-03	PLoS Genet	Meta-analysis of genome-wide scans for human adult stature identifies novel Loci and associations with measures of skeletal frame size.	Height	12,611 European ancestry individuals	7,187 European ancestry individuals	6p21.31	HMGA1, C6orf106	rs1776897-?	0.49	8E-11		0.12	[0.08-0.16] s.d. increase	Illumina [229216]	N
845	chr6	34195010	34195011	rs1776897	18391951	Gudbjartsson DF	2008-04-06	Nat Genet	Many sequence variants affecting diversity of adult human height.	Height	30,968 European ancestry individuals	8,541 European ancestry individuals	6p21.31	LBH, HMGA1	rs1776897-C	0.07	1E-8		8.8	[5.66-11.94] % s.d. increase	Affymetrix, Illumina [up to 304226]	N
845	chr6	34195176	34195199	rs201220830	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p21.31	GRM4, HMGA1	rs201220830-?	0.05	4E-8		1.11	[1.09-1.14]	Illumina [at least 560000] (imputed)	N
845	chr6	34195176	34195199	rs201220830	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p21.31	GRM4, HMGA1	rs201220830-?	NR	4E-8		1.1135857	[1.07-1.16]	Illumina [13757430] (imputed)	N
845	chr6	34195446	34195447	rs1759646	34054925	Cho HW	2021-05-13	Front Genet	A Genome-Wide Association Study of Novel Genetic Variants Associated With Anthropometric Traits in Koreans.	Weight	2,603 Korean ancestry males, 2,869 Korean ancestry females	19,571 Korean ancestry males, 37,321 Korean ancestry females	6p21.31	HGMA1	rs1759646-C	0.1652	3E-14	(male)	0.84	[0.62-1.06] unit increase	NR [8056211] (imputed)	N
845	chr6	34197456	34197457	rs114432657	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6p21.31	NR	rs114432657-?	NR	2E-15				Affymetrix [~ 8270000] (imputed)	N
845	chr6	34199091	34199092	rs2780226	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	6p21.31	NR	rs2780226-?	NR	4E-20		0.05885254	[0.046-0.071] unit decrease	Illumina [34656550] (imputed)	N
845	chr6	34199091	34199092	rs2780226	31097437	Plotnikov D	2019-05-16	Br J Ophthalmol	Association between birth weight and refractive error in adulthood: a Mendelian randomisation study.	Birth weight	188,039 European ancestry individuals	NA	6p21.31	NR	rs2780226-T	0.1	7E-12		0.039	[0.027-0.051] z score decrease	Affymetrix [up to 10400000] (imputed)	N
845	chr6	34199091	34199092	rs2780226	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Anthropometric traits (multi-trait analysis)	4,988 Spanish ancestry individuals	336,107 British ancestry individuals	6p21.31	GRM4, HMGA1	rs2780226-?		3E-69				Illumina [9499600] (imputed)	N
845	chr6	34199091	34199092	rs2780226	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Anthropometric traits	4,988 Spanish ancestry individuals	336,107 British ancestry individuals	6p21.31	GRM4, HMGA1	rs2780226-C	0.089	7E-109	(height)	0.06723	[0.061-0.073] unit increase	Illumina [9499600] (imputed)	N
845	chr6	34199091	34199092	rs2780226	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.31	CYCSL1, HMGA1	rs2780226-C	0.0816	7E-14	(EA)	0.053	[0.039-0.067] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
845	chr6	34199091	34199092	rs2780226	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.31	CYCSL1, HMGA1	rs2780226-C	0.0816	1E-11	(EA, women)	0.0618	[0.044-0.08] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
845	chr6	34199091	34199092	rs2780226	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6p21.31	CYCSL1, HMGA1	rs2780226-C	0.0827	6E-8	(EA,women)	0.0558	[0.036-0.076] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
845	chr6	34199091	34199092	rs2780226	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6p21.31	CYCSL1, HMGA1	rs2780226-C	0.0816	8E-10	(EA)	0.0504	[0.034-0.066] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
845	chr6	34199091	34199092	rs2780226	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.31	CYCSL1, HMGA1	rs2780226-?	0.0816	5E-12	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
845	chr6	34199091	34199092	rs2780226	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.31	CYCSL1, HMGA1	rs2780226-?	0.0816	1E-10	(EA, women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
845	chr6	34199091	34199092	rs2780226	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	6p21.31	HMGA1	rs2780226-T	0.92	8E-28		0.076	[NR] unit decrease	Affymetrix, Illumina [2834208] (imputed)	N
845	chr6	34199814	34199815	rs75034466	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	6p21.31	HMGA1	rs75034466-T	0.047838999999999965	2E-17		0.062484	[0.048-0.077] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
845	chr6	34202628	34202629	rs142583445	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.31	HMGA1	rs142583445-T	NR	6E-10		0.0814278	[0.056-0.107] unit increase	Affymetrix [321114] (imputed)	N
845	chr6	34202878	34202879	rs55692303	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	6p21.31	HMGA1	rs55692303-A	0.047333	2E-20		0.04615764	[0.036-0.056] unit decrease	Affymetrix [93095623] (imputed)	N
845	chr6	34203892	34203893	rs115177000	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6p21.31	HMGA1	rs115177000-A	0.044868	9E-44		0.073195286	[0.063-0.084] unit decrease	Affymetrix [93095623] (imputed)	N
845	chr6	34203892	34203893	rs115177000	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	6p21.31	HMGA1	rs115177000-A	0.044897	6E-34		0.0573244	[0.048-0.067] unit decrease	Affymetrix [93095623] (imputed)	N
845	chr6	34204284	34204285	rs6937622	34054925	Cho HW	2021-05-13	Front Genet	A Genome-Wide Association Study of Novel Genetic Variants Associated With Anthropometric Traits in Koreans.	Height	2,603 Korean ancestry males, 2,869 Korean ancestry females	19,571 Korean ancestry males, 37,321 Korean ancestry females	6p21.31	HMGA1	rs6937622-G	0.1611	1E-22	(female)	0.47	[0.37-0.57] unit increase	NR [8056211] (imputed)	N
845	chr6	34204285	34204286	rs191720756	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	6p21.31	HMGA1	rs191720756-A	0.0128	4E-24		0.0865	[0.07-0.103] unit increase	Affymetrix [18391927] (imputed)	N
845	chr6	34204853	34204854	rs532749103	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	6p21.31	HMGA1	rs532749103-T	0.00262399999999996	4E-11		0.1681015	[0.12-0.22] unit decrease	Affymetrix [93095623] (imputed)	N
845	chr6	34204853	34204854	rs532749103	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.31	HMGA1	rs532749103-T	0.00262300000000004	2E-10		0.16041075	[0.11-0.21] unit decrease	Affymetrix [93095623] (imputed)	N
845	chr6	34205464	34205465	rs370788671	34054925	Cho HW	2021-05-13	Front Genet	A Genome-Wide Association Study of Novel Genetic Variants Associated With Anthropometric Traits in Koreans.	Weight	2,603 Korean ancestry males, 2,869 Korean ancestry females	19,571 Korean ancestry males, 37,321 Korean ancestry females	6p21.31	HMGA1	rs370788671-G	0.1626	2E-14	(male)	0.86	[0.64-1.08] unit increase	NR [8056211] (imputed)	N
845	chr6	34205464	34205465	rs370788671	34054925	Cho HW	2021-05-13	Front Genet	A Genome-Wide Association Study of Novel Genetic Variants Associated With Anthropometric Traits in Koreans.	Height	2,603 Korean ancestry males, 2,869 Korean ancestry females	19,571 Korean ancestry males, 37,321 Korean ancestry females	6p21.31	HMGA1	rs370788671-G	0.1626	6E-23	(female)	0.47	[0.37-0.57] unit increase	NR [8056211] (imputed)	N
845	chr6	34205465	34205465	rs202228093	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	6p21.31		rs202228093-GGAGCCC	NR	4E-223		0.063	[0.059-0.067] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
845	chr6	34205465	34205465	rs202228093	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.31	HMGA1	rs202228093-G	NR	6E-68		0.0822943	[0.073-0.092] unit increase	Affymetrix [321114] (imputed)	N
845	chr6	34205465	34205465	rs202228093	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6p21.31	HMGA1	rs202228093-G	NR	5E-25		0.0531035	[0.043-0.063] unit increase	Affymetrix [321114] (imputed)	N
845	chr6	34205465	34205465	rs202228093	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.31	HMGA1	rs202228093-G	NR	6E-16		0.0378514	[0.029-0.047] unit increase	Affymetrix [321016] (imputed)	N
845	chr6	34205465	34205465	rs202228093	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.31	HMGA1	rs202228093-G	NR	1E-12		0.0363063	[0.026-0.046] unit increase	Affymetrix [323123] (imputed)	N
845	chr6	34205465	34205465	rs202228093	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	6p21.31	HMGA1	rs202228093-G	0.1036	9E-77		0.058	[0.052-0.064] unit increase	Affymetrix [18391927] (imputed)	N
845	chr6	34205821	34205822	rs118012224	34054925	Cho HW	2021-05-13	Front Genet	A Genome-Wide Association Study of Novel Genetic Variants Associated With Anthropometric Traits in Koreans.	Height	2,603 Korean ancestry males, 2,869 Korean ancestry females	19,571 Korean ancestry males, 37,321 Korean ancestry females	6p21.31	HMGA1	rs118012224-C	0.1269	1E-21	(female)	0.5	[0.4-0.6] unit increase	NR [8056211] (imputed)	N
845	chr6	34205822	34205823	rs186006155	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6p21.31	NR	rs186006155-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
845	chr6	34205822	34205823	rs186006155	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	6p21.31		rs186006155-?	NR	1E-8				NR [~ 8900000] (imputed)	N
845	chr6	34206044	34206045	rs117741261	34054925	Cho HW	2021-05-13	Front Genet	A Genome-Wide Association Study of Novel Genetic Variants Associated With Anthropometric Traits in Koreans.	Height	2,603 Korean ancestry males, 2,869 Korean ancestry females	19,571 Korean ancestry males, 37,321 Korean ancestry females	6p21.31	HMGA1	rs117741261-G	0.1285	8E-21	(female)	0.49	[0.39-0.59] unit increase	NR [8056211] (imputed)	N
845	chr6	34207473	34207474	rs76863928	34054925	Cho HW	2021-05-13	Front Genet	A Genome-Wide Association Study of Novel Genetic Variants Associated With Anthropometric Traits in Koreans.	Height	2,603 Korean ancestry males, 2,869 Korean ancestry females	19,571 Korean ancestry males, 37,321 Korean ancestry females	6p21.31	HMGA1	rs76863928-T	0.1606	2E-22	(female)	0.47	[0.37-0.57] unit increase	NR [8056211] (imputed)	N
845	chr6	34207475	34207475	rs67968906	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	6p21.31	HMGA1	rs67968906-T	0.0811	3E-12		0.0969	[0.07-0.124] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
845	chr6	34208189	34208190	rs73744859	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	6p21.31	HMGA1	rs73744859-T	0.9498	1E-8		0.3749	[0.25-0.5] mmHg decrease	Affymetrix [NR] (imputed)	N
845	chr6	34209280	34209281	rs4713761	34054925	Cho HW	2021-05-13	Front Genet	A Genome-Wide Association Study of Novel Genetic Variants Associated With Anthropometric Traits in Koreans.	Height	2,603 Korean ancestry males, 2,869 Korean ancestry females	19,571 Korean ancestry males, 37,321 Korean ancestry females	6p21.31	HMGA1	rs4713761-A	0.1286	1E-20	(female)	0.49	[0.39-0.59] unit increase	NR [8056211] (imputed)	N
846	chr6	34211237	34211238	rs41269028	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p21.31	HMGA1	rs41269028-T		3E-10		0.033	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
846	chr6	34211237	34211238	rs41269028	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6p21.31	NR	rs41269028-?	NR	7E-10				Affymetrix [~ 8270000] (imputed)	N
846	chr6	34211341	34211342	rs35381162	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	6p21.31		rs35381162-G	0.864753	1E-94		0.0604453	[0.055-0.066] unit decrease	Illumina [13479295] (imputed)	N
846	chr6	34211341	34211342	rs35381162	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	6p21.31	HMGA1	rs35381162-?	NR	1E-107		0.09114417	[0.083-0.099] unit decrease	Illumina [27896057] (imputed)	N
846	chr6	34212537	34212537	rs551980123	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.31	HMGA1	rs551980123-TG	NR	3E-72		0.125429	[0.11-0.14] unit increase	Affymetrix [319769] (imputed)	N
846	chr6	34212537	34212537	rs551980123	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.31	HMGA1	rs551980123-TG	NR	4E-62		0.117438	[0.1-0.13] unit increase	Affymetrix [321169] (imputed)	N
846	chr6	34212537	34212537	rs551980123	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	6p21.31	HMGA1	rs551980123-TG	0.044471	1E-23		0.05529709	[0.045-0.066] unit decrease	Affymetrix [93095623] (imputed)	N
846	chr6	34214321	34214322	rs1150781	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	6p21.31		rs1150781-?	NR	1E-9		0.00975853	[0.0066-0.0129] unit increase	NR [NR]	N
846	chr6	34214321	34214322	rs1150781	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	41,389 African ancestry individuals	11,364 African ancestry individuals, 253,288 European ancestry individuals	6p21.31	C6orf1	rs1150781-C	0.436	2E-13	(AA)	0.052	[0.038-0.066] unit increase	Affymetrix, Illumina [17972582] (imputed)	N
846	chr6	34214321	34214322	rs1150781	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	41,389 African ancestry individuals	11,364 African ancestry individuals, 253,288 European ancestry individuals	6p21.31	C6orf1	rs1150781-C		9E-56				Affymetrix, Illumina [17972582] (imputed)	N
846	chr6	34214321	34214322	rs1150781	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	25,369 African ancestry women	8,449 African ancestry women, up to 253,288 European ancestry women	6p21.31	C6orf1	rs1150781-C	0.437	7E-9	(AA)	0.05	[0.032-0.068] unit increase	Affymetrix, Illumina [19885954] (imputed)	N
846	chr6	34214321	34214322	rs1150781	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	16,021 African ancestry men	2,915 African ancestry men, up to 253,288 European ancestry men	6p21.31	C6orf1	rs1150781-C	0.434	5E-7	(AA)	0.057	[0.035-0.079] unit increase	Affymetrix, Illumina [16055004] (imputed)	N
846	chr6	34214321	34214322	rs1150781	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	6p21.31	NR	rs1150781-?	NR	3E-21		0.05961512	[0.047-0.072] unit decrease	Illumina [34656550] (imputed)	N
846	chr6	34214321	34214322	rs1150781	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Anthropometric traits (multi-trait analysis)	4,988 Spanish ancestry individuals	336,107 British ancestry individuals	6p21.31	HMGA1, SMIM29, AL354740	rs1150781-?		2E-69				Illumina [9499600] (imputed)	N
846	chr6	34214321	34214322	rs1150781	21998595	N'Diaye A	2011-10-06	PLoS Genet	Identification, replication, and fine-mapping of Loci associated with adult height in individuals of african ancestry.	Height	20,427 African ancestry individuals	Up to 16,436 African American individuals	6p21.31	HMGA1	rs1150781-C	0.42	2E-8		0.048	[0.030-0.066] unit increase	Affymetrix, Illumina [3310998] (imputed)	N
846	chr6	34214669	34214670	rs4711389	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	6p21.31	HMGA1	rs4711389-A	0.893	7E-17		1.1	[1.07-1.12]	Affymetrix, Illumina [11800000] (imputed)	N
846	chr6	34215220	34215221	rs928482	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	133,471 East Asian ancestry individuals	NA	6p21.31		rs928482-A	0.193335	3E-9		0.0260838	[0.017-0.035] unit decrease	Illumina [13476165] (imputed)	N
846	chr6	34215918	34215919	rs1150779	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Spleen volume	32,860 European ancestry individuals	NA	6p21.31	SMIM29	rs1150779-?	NR	6E-12		0.0891	NR L decrease	Affymetrix [9390170] (imputed)	N
846	chr6	34215918	34215919	rs1150779	34054925	Cho HW	2021-05-13	Front Genet	A Genome-Wide Association Study of Novel Genetic Variants Associated With Anthropometric Traits in Koreans.	Height	2,603 Korean ancestry males, 2,869 Korean ancestry females	19,571 Korean ancestry males, 37,321 Korean ancestry females	6p21.31	SMIM29	rs1150779-C	0.175	3E-18	(female)	0.4	[0.3-0.5] unit increase	NR [8056211] (imputed)	N
846	chr6	34218164	34218165	rs10080749	34054925	Cho HW	2021-05-13	Front Genet	A Genome-Wide Association Study of Novel Genetic Variants Associated With Anthropometric Traits in Koreans.	Height	2,603 Korean ancestry males, 2,869 Korean ancestry females	19,571 Korean ancestry males, 37,321 Korean ancestry females	6p21.31	SMIM29	rs10080749-G	0.1691	1E-18	(female)	0.41	[0.31-0.51] unit increase	NR [8056211] (imputed)	N
846	chr6	34218574	34218575	rs59412811	34054925	Cho HW	2021-05-13	Front Genet	A Genome-Wide Association Study of Novel Genetic Variants Associated With Anthropometric Traits in Koreans.	Height	2,603 Korean ancestry males, 2,869 Korean ancestry females	19,571 Korean ancestry males, 37,321 Korean ancestry females	6p21.31	SMIM29	rs59412811-C	0.173	2E-18	(female)	0.41	[0.31-0.51] unit increase	NR [8056211] (imputed)	N
846	chr6	34218574	34218575	rs59412811	30690781	Pei YF	2019-02-28	J Bone Miner Res	Joint Association Analysis Identified 18 New Loci for Bone Mineral Density.	Total body bone mineral density (MTAG)	at least 66,628 individuals	NA	6p21.31	NR	rs59412811-A	0.89	8E-9		0.04	[0.026-0.054] unit increase	NR [9704453]	N
846	chr6	34218574	34218575	rs59412811	30690781	Pei YF	2019-02-28	J Bone Miner Res	Joint Association Analysis Identified 18 New Loci for Bone Mineral Density.	Heel bone mineral density (MTAG)	at least 142,487 individuals	NA	6p21.31	NR	rs59412811-A	0.89	4E-7		0.05	[0.028-0.072] unit increase	NR [9704453]	N
846	chr6	34219697	34219698	rs57026767	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.31	C6orf1	rs57026767-C	NR	6E-12		0.0263783	[0.019-0.034] unit increase	Affymetrix [321016] (imputed)	N
846	chr6	34219697	34219698	rs57026767	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.31	C6orf1	rs57026767-C	NR	4E-15		0.0328544	[0.025-0.041] unit increase	Affymetrix [323123] (imputed)	N
846	chr6	34219697	34219698	rs57026767	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	Height	19,965 British ancestry individuals from 6863 families.	NA	6p21.31	C6orf1	rs57026767-T	0.155	5E-11		0.0061093657	[0.0043-0.0079] m decrease	Illumina [24111857] (imputed)	N
846	chr6	34221603	34221604	rs9394201	34054925	Cho HW	2021-05-13	Front Genet	A Genome-Wide Association Study of Novel Genetic Variants Associated With Anthropometric Traits in Koreans.	Height	2,603 Korean ancestry males, 2,869 Korean ancestry females	19,571 Korean ancestry males, 37,321 Korean ancestry females	6p21.31	SMIM29	rs9394201-C	0.1762	1E-18	(female)	0.41	[0.31-0.51] unit increase	NR [8056211] (imputed)	N
846	chr6	34222200	34222201	rs116141873	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting insulin	151,013 European ancestry individuals	NA	6p21.31	C6orf1	rs116141873-T	0.0399	1E-11		0.0428	[0.031-0.054] unit increase	Affymetrix, Illumina [32635793] (imputed)	N
846	chr6	34222593	34222594	rs147736074	34054925	Cho HW	2021-05-13	Front Genet	A Genome-Wide Association Study of Novel Genetic Variants Associated With Anthropometric Traits in Koreans.	Height	2,603 Korean ancestry males, 2,869 Korean ancestry females	19,571 Korean ancestry males, 37,321 Korean ancestry females	6p21.31	C6orf106	rs147736074-C	0.1662	3E-18	(female)	0.41	[0.31-0.51] unit increase	NR [8056211] (imputed)	N
846	chr6	34222938	34222939	rs9366846	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	6p21.31	NR	rs9366846-G	0.831	2E-9		0.00874686	[0.0059-0.0116] unit decrease	NR [9732723] (imputed)	N
846	chr6	34223097	34223098	rs112495680	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium HDL	115,082 European ancestry individuals	NA	6p21.31		rs112495680-A	0.866586	3E-9		0.0335924	[0.023-0.045] unit increase	NR [11722792] (imputed)	N
846	chr6	34223097	34223098	rs112495680	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium HDL	115,082 European ancestry individuals	NA	6p21.31		rs112495680-A	0.866586	1E-8		0.0325979	[0.021-0.044] unit increase	NR [11722792] (imputed)	N
846	chr6	34223097	34223098	rs112495680	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium HDL particles	115,082 European ancestry individuals	NA	6p21.31		rs112495680-A	0.866586	9E-10		0.0344311	[0.023-0.045] unit increase	NR [11722792] (imputed)	N
846	chr6	34223097	34223098	rs112495680	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein A1 levels	115,082 European ancestry individuals	NA	6p21.31		rs112495680-A	0.866586	4E-10		0.0348616	[0.024-0.046] unit increase	NR [11722792] (imputed)	N
846	chr6	34223097	34223098	rs112495680	32121467	Adewuyi EO	2020-02-29	Genes (Basel)	Shared Molecular Genetic Mechanisms Underlie Endometriosis and Migraine Comorbidity.	Endometriosis or migraine	17,054 European and Japanese ancestry endometriosis cases, 29,208 European ancestry migraine cases, 191,858 European and Japanese ancestry controls, 172,931 European ancestry controls	NA	6p21.31	NR	rs112495680-G	NR	5E-6	(random effect)	1.0638298	NR	NR [6904914] (imputed)	N
846	chr6	34224308	34224309	rs9368804	34054925	Cho HW	2021-05-13	Front Genet	A Genome-Wide Association Study of Novel Genetic Variants Associated With Anthropometric Traits in Koreans.	Height	2,603 Korean ancestry males, 2,869 Korean ancestry females	19,571 Korean ancestry males, 37,321 Korean ancestry females	6p21.31	NR	rs9368804-C	0.1793	1E-17	(female)	0.39	[0.29-0.49] unit increase	NR [8056211] (imputed)	N
846	chr6	34224545	34224546	rs2780216	34054925	Cho HW	2021-05-13	Front Genet	A Genome-Wide Association Study of Novel Genetic Variants Associated With Anthropometric Traits in Koreans.	Height	2,603 Korean ancestry males, 2,869 Korean ancestry females	19,571 Korean ancestry males, 37,321 Korean ancestry females	6p21.31	NR	rs2780216-G	0.1722	5E-17	(female)	0.39	[0.29-0.49] unit increase	NR [8056211] (imputed)	N
846	chr6	34224836	34224837	rs2797967	34054925	Cho HW	2021-05-13	Front Genet	A Genome-Wide Association Study of Novel Genetic Variants Associated With Anthropometric Traits in Koreans.	Height	2,603 Korean ancestry males, 2,869 Korean ancestry females	19,571 Korean ancestry males, 37,321 Korean ancestry females	6p21.31	SMIM29	rs2797967-G	0.181	3E-17	(female)	0.39	[0.29-0.49] unit increase	NR [8056211] (imputed)	N
846	chr6	34225074	34225075	rs9368805	34054925	Cho HW	2021-05-13	Front Genet	A Genome-Wide Association Study of Novel Genetic Variants Associated With Anthropometric Traits in Koreans.	Height	2,603 Korean ancestry males, 2,869 Korean ancestry females	19,571 Korean ancestry males, 37,321 Korean ancestry females	6p21.31	SMIM29	rs9368805-T	0.172	5E-17	(female)	0.39	[0.29-0.49] unit increase	NR [8056211] (imputed)	N
846	chr6	34225074	34225075	rs9368805	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Glomerular filtration rate	143,658 Japanese ancestry individuals	NA	6p21.31	C6orf1, RPS10-NUDT3	rs9368805-?	NR	2E-9		0.02906	[0.02-0.039] unit increase novel	Illumina [6108953] (imputed)	N
846	chr6	34225268	34225269	rs9394204	34054925	Cho HW	2021-05-13	Front Genet	A Genome-Wide Association Study of Novel Genetic Variants Associated With Anthropometric Traits in Koreans.	Height	2,603 Korean ancestry males, 2,869 Korean ancestry females	19,571 Korean ancestry males, 37,321 Korean ancestry females	6p21.31	SMIM29	rs9394204-C	0.181	3E-17	(female)	0.39	[0.29-0.49] unit increase	NR [8056211] (imputed)	N
846	chr6	34225354	34225355	rs181452300	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.31	RPL35P2	rs181452300-T	NR	1E-30		0.0477582	[0.04-0.056] unit increase	Affymetrix [319769] (imputed)	N
846	chr6	34225354	34225355	rs181452300	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.31	RPL35P2	rs181452300-T	NR	2E-33		0.0499566	[0.042-0.058] unit increase	Affymetrix [319769] (imputed)	N
846	chr6	34225354	34225355	rs181452300	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.31	RPL35P2	rs181452300-T	NR	2E-28		0.0464251	[0.038-0.055] unit increase	Affymetrix [321169] (imputed)	N
846	chr6	34225483	34225484	rs13201774	34054925	Cho HW	2021-05-13	Front Genet	A Genome-Wide Association Study of Novel Genetic Variants Associated With Anthropometric Traits in Koreans.	Height	2,603 Korean ancestry males, 2,869 Korean ancestry females	19,571 Korean ancestry males, 37,321 Korean ancestry females	6p21.31	C6orf106	rs13201774-G	0.1722	5E-17	(female)	0.39	[0.29-0.49] unit increase	NR [8056211] (imputed)	N
846	chr6	34228564	34228565	rs111658701	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.31	NR	rs111658701-T	0.949	6E-6		1.356	[1.22-1.49]	Illumina [11270530] (imputed)	N
846	chr6	34230030	34230031	rs9394205	34054925	Cho HW	2021-05-13	Front Genet	A Genome-Wide Association Study of Novel Genetic Variants Associated With Anthropometric Traits in Koreans.	Height	2,603 Korean ancestry males, 2,869 Korean ancestry females	19,571 Korean ancestry males, 37,321 Korean ancestry females	6p21.31	SMIM29	rs9394205-C	0.1724	6E-17	(female)	0.39	[0.29-0.49] unit increase	NR [8056211] (imputed)	N
846	chr6	34231004	34231005	rs78420081	34054925	Cho HW	2021-05-13	Front Genet	A Genome-Wide Association Study of Novel Genetic Variants Associated With Anthropometric Traits in Koreans.	Height	2,603 Korean ancestry males, 2,869 Korean ancestry females	19,571 Korean ancestry males, 37,321 Korean ancestry females	6p21.31	SMIM29	rs78420081-C	0.1247	2E-21	(female)	0.51	[0.41-0.61] unit increase	NR [8056211] (imputed)	N
846	chr6	34231660	34231661	rs4713762	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	6p21.31		rs4713762-A	0.13109	2E-51		0.0603987	[0.053-0.068] unit increase	Illumina [13479924] (imputed)	N
846	chr6	34232258	34232259	rs148899910	34054925	Cho HW	2021-05-13	Front Genet	A Genome-Wide Association Study of Novel Genetic Variants Associated With Anthropometric Traits in Koreans.	Height	2,603 Korean ancestry males, 2,869 Korean ancestry females	19,571 Korean ancestry males, 37,321 Korean ancestry females	6p21.31	NR	rs148899910-C	0.1534	2E-20	(female)	0.45	[0.35-0.55] unit increase	NR [8056211] (imputed)	N
846	chr6	34232340	34232341	rs12530053	34054925	Cho HW	2021-05-13	Front Genet	A Genome-Wide Association Study of Novel Genetic Variants Associated With Anthropometric Traits in Koreans.	Height	2,603 Korean ancestry males, 2,869 Korean ancestry females	19,571 Korean ancestry males, 37,321 Korean ancestry females	6p21.31	SMIM29	rs12530053-C	0.17	4E-17	(female)	0.39	[0.29-0.49] unit increase	NR [8056211] (imputed)	N
846	chr6	34232863	34232864	rs9469757	34054925	Cho HW	2021-05-13	Front Genet	A Genome-Wide Association Study of Novel Genetic Variants Associated With Anthropometric Traits in Koreans.	Height	2,603 Korean ancestry males, 2,869 Korean ancestry females	19,571 Korean ancestry males, 37,321 Korean ancestry females	6p21.31	RP11-513I15.6	rs9469757-C	0.17	3E-17	(female)	0.4	[0.3-0.5] unit increase	NR [8056211] (imputed)	N
846	chr6	34233968	34233969	rs1333044878	34054925	Cho HW	2021-05-13	Front Genet	A Genome-Wide Association Study of Novel Genetic Variants Associated With Anthropometric Traits in Koreans.	Height	2,603 Korean ancestry males, 2,869 Korean ancestry females	19,571 Korean ancestry males, 37,321 Korean ancestry females	6p21.31	NR	rs1333044878-CA	0.153	2E-20	(female)	0.45	[0.35-0.55] unit increase	NR [8056211] (imputed)	N
846	chr6	34234953	34234953	rs199679345	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Creatinine levels	110,051 European ancestry individuals	NA	6p21.31		rs199679345-C,rs199679345-C	0.951717	1E-8		0.0474035	[0.031-0.064] unit increase	NR [11722792] (imputed)	N
846	chr6	34234953	34234953	rs199679345	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Creatinine levels	110,051 European ancestry individuals	NA	6p21.31		rs199679345-C,rs199679345-C	0.951717	1E-8		0.0474035	[0.031-0.064] unit increase	NR [11722792] (imputed)	N
846	chr6	34235377	34235378	rs116466979	33057200	Bao EL	2020-10-14	Nature	Inherited myeloproliferative neoplasm risk affects haematopoietic stem cells.	Myeloproliferative neoplasms	1,086 British ancestry cases, 407,155 British ancestry controls, 640 Finnish ancestry cases, 176,259 Finnish ancestry controls	NA	6p21.31	NUDT3, HMGA1	rs116466979-C	0.0453	3E-9		1.5	1.31-1.71	Affymetrix [6845584] (imputed)	N
846	chr6	34236133	34236133	rs988580242	34054925	Cho HW	2021-05-13	Front Genet	A Genome-Wide Association Study of Novel Genetic Variants Associated With Anthropometric Traits in Koreans.	Height	2,603 Korean ancestry males, 2,869 Korean ancestry females	19,571 Korean ancestry males, 37,321 Korean ancestry females	6p21.31	NR	rs988580242-AAAAAAC	0.1686	7E-17	(female)	0.39	[0.29-0.49] unit increase	NR [8056211] (imputed)	N
846	chr6	34236428	34236429	rs9469761	34054925	Cho HW	2021-05-13	Front Genet	A Genome-Wide Association Study of Novel Genetic Variants Associated With Anthropometric Traits in Koreans.	Height	2,603 Korean ancestry males, 2,869 Korean ancestry females	19,571 Korean ancestry males, 37,321 Korean ancestry females	6p21.31	RP11-513I15.6	rs9469761-A	0.169	3E-17	(female)	0.4	[0.3-0.5] unit increase	NR [8056211] (imputed)	N
846	chr6	34236428	34236429	rs9469761	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p21.31	NUDT3	rs9469761-A	0.1231	4E-6	(EA, men)	0.037	[0.021-0.053] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
846	chr6	34236428	34236429	rs9469761	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p21.31	NUDT3	rs9469761-A	0.1231	3E-8	(EA)	0.032	[0.021-0.043] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
846	chr6	34236429	34236430	rs9469762	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	6p21.31		rs9469762-A	0.111308053	7E-9		0.09069452	[0.06-0.121] unit decrease	Illumina [13134967] (imputed)	N
846	chr6	34236429	34236430	rs9469762	34054925	Cho HW	2021-05-13	Front Genet	A Genome-Wide Association Study of Novel Genetic Variants Associated With Anthropometric Traits in Koreans.	Height	2,603 Korean ancestry males, 2,869 Korean ancestry females	19,571 Korean ancestry males, 37,321 Korean ancestry females	6p21.31	NR	rs9469762-A	0.126	8E-20	(female)	0.48	[0.38-0.58] unit increase	NR [8056211] (imputed)	N
846	chr6	34236429	34236430	rs9469762	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	6p21.31	NUDT3, PACSIN1, RPS10, SPDEF	rs9469762-A	0.034795	3E-11	(females)	0.05427	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
846	chr6	34236429	34236430	rs9469762	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	6p21.31	NUDT3, PACSIN1, RPS10, SPDEF	rs9469762-A	0.034795	1E-12	(females)	0.05879	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
846	chr6	34236461	34236462	rs115299044	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	6p21.31		rs115299044-G	NR	8E-17		0.0444	[0.034-0.055] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
846	chr6	34236461	34236462	rs115299044	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	6p21.31		rs115299044-?	NR	2E-16				NR [~ 8900000] (imputed)	N
846	chr6	34236972	34236973	rs2780215	34054925	Cho HW	2021-05-13	Front Genet	A Genome-Wide Association Study of Novel Genetic Variants Associated With Anthropometric Traits in Koreans.	Height	2,603 Korean ancestry males, 2,869 Korean ancestry females	19,571 Korean ancestry males, 37,321 Korean ancestry females	6p21.31	AL354740.1	rs2780215-G	0.13	7E-21	(female)	0.49	[0.39-0.59] unit increase	NR [8056211] (imputed)	N
846	chr6	34236972	34236973	rs2780215	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	6p21.31	NR	rs2780215-G	0.1001	6E-9		0.0531	[0.035-0.071] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
846	chr6	34236989	34236990	rs186766320	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.31	RPL35P2	rs186766320-A	NR	3E-25		0.0903477	[0.073-0.107] unit increase	Affymetrix [321016] (imputed)	N
846	chr6	34237129	34237130	rs1759637	34054925	Cho HW	2021-05-13	Front Genet	A Genome-Wide Association Study of Novel Genetic Variants Associated With Anthropometric Traits in Koreans.	Height	2,603 Korean ancestry males, 2,869 Korean ancestry females	19,571 Korean ancestry males, 37,321 Korean ancestry females	6p21.31	RP11-513I15.6	rs1759637-C	0.193	9E-15	(female)	0.35	[0.27-0.43] unit increase	NR [8056211] (imputed)	N
846	chr6	34237129	34237130	rs1759637	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.31	RPL35P2	rs1759637-C	NR	2E-10		0.0233622	[0.016-0.031] unit increase	Affymetrix [319769] (imputed)	N
846	chr6	34237129	34237130	rs1759637	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.31	RPL35P2	rs1759637-C	NR	1E-11		0.0247732	[0.018-0.032] unit increase	Affymetrix [319769] (imputed)	N
846	chr6	34237129	34237130	rs1759637	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.31	RPL35P2	rs1759637-C	NR	1E-10		0.0238951	[0.017-0.031] unit increase	Affymetrix [321169] (imputed)	N
846	chr6	34237198	34237199	rs9461976	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	HDL cholesterol levels	115,082 European ancestry individuals	NA	6p21.31		rs9461976-G	0.969934	3E-10		0.0775971	[0.054-0.102] unit increase	NR [11722792] (imputed)	N
846	chr6	34237198	34237199	rs9461976	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	6p21.31		rs9461976-G	0.969934	2E-8		0.0704713	[0.046-0.095] unit increase	NR [11722792] (imputed)	N
846	chr6	34237198	34237199	rs9461976	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in HDL	115,082 European ancestry individuals	NA	6p21.31		rs9461976-G	0.969934	2E-9		0.0734486	[0.05-0.097] unit increase	NR [11722792] (imputed)	N
846	chr6	34237198	34237199	rs9461976	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium HDL	115,082 European ancestry individuals	NA	6p21.31		rs9461976-G	0.969934	9E-9		0.0730804	[0.048-0.098] unit increase	NR [11722792] (imputed)	N
846	chr6	34237198	34237199	rs9461976	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	6p21.31		rs9461976-G	0.969934	3E-10		0.0780798	[0.054-0.102] unit increase	NR [11722792] (imputed)	N
846	chr6	34237198	34237199	rs9461976	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	6p21.31		rs9461976-G	0.969934	8E-9		0.0728792	[0.048-0.098] unit increase	NR [11722792] (imputed)	N
846	chr6	34237198	34237199	rs9461976	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	6p21.31	NR	rs9461976-G	0.970181	6E-10		0.0168728	[0.011-0.022] unit increase	Affymetrix [16582909] (imputed)	N
846	chr6	34237198	34237199	rs9461976	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	6p21.31	NR	rs9461976-G	0.970181	5E-6		0.0139303	[0.0078-0.0201] unit increase	Affymetrix [16582965] (imputed)	N
846	chr6	34237200	34237201	rs190927521	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	6p21.31		rs190927521-C	0.97485	5E-9		0.0821863	[0.055-0.11] unit increase	NR [11722792] (imputed)	N
846	chr6	34237200	34237201	rs190927521	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	6p21.31		rs190927521-C	0.974847	2E-12		0.0946994	[0.068-0.121] unit increase	NR [11722792] (imputed)	N
846	chr6	34237200	34237201	rs190927521	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	6p21.31		rs190927521-C	0.974847	8E-9		0.0799076	[0.053-0.107] unit increase	NR [11722792] (imputed)	N
846	chr6	34237200	34237201	rs190927521	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	6p21.31		rs190927521-C	0.974847	4E-12		0.094081	[0.067-0.121] unit increase	NR [11722792] (imputed)	N
846	chr6	34237375	34237376	rs200808496	34054925	Cho HW	2021-05-13	Front Genet	A Genome-Wide Association Study of Novel Genetic Variants Associated With Anthropometric Traits in Koreans.	Height	2,603 Korean ancestry males, 2,869 Korean ancestry females	19,571 Korean ancestry males, 37,321 Korean ancestry females	6p21.31	RP11-513I15.6	rs200808496-T	0.203	5E-14	(female)	0.33	[0.25-0.41] unit increase	NR [8056211] (imputed)	N
846	chr6	34237746	34237747	rs1776890	34054925	Cho HW	2021-05-13	Front Genet	A Genome-Wide Association Study of Novel Genetic Variants Associated With Anthropometric Traits in Koreans.	Height	2,603 Korean ancestry males, 2,869 Korean ancestry females	19,571 Korean ancestry males, 37,321 Korean ancestry females	6p21.31	RP11-513I15.6	rs1776890-G	0.194	2E-15	(female)	0.35	[0.27-0.43] unit increase	NR [8056211] (imputed)	N
846	chr6	34237796	34237797	rs2797961	34054925	Cho HW	2021-05-13	Front Genet	A Genome-Wide Association Study of Novel Genetic Variants Associated With Anthropometric Traits in Koreans.	Height	2,603 Korean ancestry males, 2,869 Korean ancestry females	19,571 Korean ancestry males, 37,321 Korean ancestry females	6p21.31	RP11-513I15.6	rs2797961-G	0.205	9E-16	(female)	0.35	[0.27-0.43] unit increase	NR [8056211] (imputed)	N
846	chr6	34237975	34237976	rs56274948	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.31	RPL35P2	rs56274948-G	NR	2E-27		0.0423614	[0.035-0.05] unit increase	Affymetrix [321114] (imputed)	N
846	chr6	34238083	34238084	rs115614261	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p21.31	NR	rs115614261-A	0.0442021	1E-11				Affymetrix, Illumina [24653286] (imputed)	N
846	chr6	34238294	34238295	rs116158112	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p21.31	NR	rs116158112-A	0.0377732	2E-32				Affymetrix, Illumina [24246363] (imputed)	N
846	chr6	34238513	34238514	rs6918981	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	6p21.31	NR	rs6918981-?	NR	5E-12		0.04197795	[0.03-0.054] unit decrease	Illumina [34656550] (imputed)	N
846	chr6	34238513	34238514	rs6918981	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	6p21.31	NUDT3	rs6918981-A	0.84	2E-30		0.069	[0.053-0.085] unit decrease	Affymetrix, Illumina [2704730] (imputed)	N
846	chr6	34238513	34238514	rs6918981	19893584	Kim JJ	2009-11-06	J Hum Genet	Identification of 15 loci influencing height in a Korean population.	Height	8,842 Korean ancestry individuals	NA	6p21.31	HMGA1, C6orf1, NUDT3	rs6918981-G	0.21	2E-8		0.55	[NR] cm increase	Affymetrix [334546]	N
846	chr6	34238513	34238514	rs6918981	19396169	Cho YS	2009-04-26	Nat Genet	A large-scale genome-wide association study of Asian populations uncovers genetic factors influencing eight quantitative traits.	Height	8,842 Korean ancestry individuals	7,861 Korean ancestry individuals	6p21.31	HMGA1	rs6918981-G	0.21	3E-8		0.4	[0.26-0.54] cm increase	Affymetrix [2156535] (imputed)	N
846	chr6	34238945	34238946	rs13207853	34054925	Cho HW	2021-05-13	Front Genet	A Genome-Wide Association Study of Novel Genetic Variants Associated With Anthropometric Traits in Koreans.	Height	2,603 Korean ancestry males, 2,869 Korean ancestry females	19,571 Korean ancestry males, 37,321 Korean ancestry females	6p21.31	RP11-513I15.6	rs13207853-C	0.181	2E-15	(female)	0.37	[0.27-0.47] unit increase	NR [8056211] (imputed)	N
846	chr6	34239988	34239989	rs1187129	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting insulin	16,386 Hispanic individuals	NA	6p21.31	RPS10-NUDT3, NUDT3	rs1187129-A	0.2415	1E-8		0.0422	[0.027-0.057] unit decrease	Affymetrix, Illumina [26195808] (imputed)	N
846	chr6	34240575	34240576	rs1307274	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	6p21.31	C6orf1, NUDT3	rs1307274-T	0.08	4E-8		1.08	[1.05-1.11]	Affymetrix, Illumina [up to 12149979] (imputed)	N
846	chr6	34240885	34240886	rs1307273	34054925	Cho HW	2021-05-13	Front Genet	A Genome-Wide Association Study of Novel Genetic Variants Associated With Anthropometric Traits in Koreans.	Height	2,603 Korean ancestry males, 2,869 Korean ancestry females	19,571 Korean ancestry males, 37,321 Korean ancestry females	6p21.31	RP11-513I15.6	rs1307273-G	0.205	3E-17	(female)	0.37	[0.29-0.45] unit increase	NR [8056211] (imputed)	N
846	chr6	34240902	34240903	rs182665950	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	6p21.31	C6orf1, NUDT3	rs182665950-?	NR	7E-14		0.10095769	[0.075-0.127] unit increase	Illumina [27896057] (imputed)	N
846	chr6	34243479	34243480	rs73420943	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.31	RP11-513I15.6, NUDT3	rs73420943-G	NR	1E-17		0.0330216	[0.025-0.041] unit increase	Affymetrix [319769] (imputed)	N
846	chr6	34243479	34243480	rs73420943	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.31	RP11-513I15.6, NUDT3	rs73420943-G	NR	3E-19		0.0345238	[0.027-0.042] unit increase	Affymetrix [319769] (imputed)	N
846	chr6	34243479	34243480	rs73420943	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.31	RP11-513I15.6, NUDT3	rs73420943-G	NR	1E-15		0.0311909	[0.024-0.039] unit increase	Affymetrix [321169] (imputed)	N
846	chr6	34243641	34243641	rs35694679	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	6p21.31	NR	rs35694679-A	0.0385361	4E-34		0.0261583	[0.022-0.03] unit increase	Affymetrix [16582909] (imputed)	N
846	chr6	34243641	34243641	rs35694679	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	6p21.31	NR	rs35694679-A	0.0385361	5E-20		0.0219176	[0.017-0.027] unit increase	Affymetrix [16582965] (imputed)	N
846	chr6	34243652	34243654	rs745630955	34054925	Cho HW	2021-05-13	Front Genet	A Genome-Wide Association Study of Novel Genetic Variants Associated With Anthropometric Traits in Koreans.	Height	2,603 Korean ancestry males, 2,869 Korean ancestry females	19,571 Korean ancestry males, 37,321 Korean ancestry females	6p21.31	NR	rs745630955-TC	0.1894	4E-16	(female)	0.37	[0.27-0.47] unit increase	NR [8056211] (imputed)	N
846	chr6	34243813	34243816	rs143188409	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.31	RP11-513I15.6, NUDT3	rs143188409-TG	NR	2E-18		0.0657382	[0.051-0.08] unit increase	Affymetrix [321016] (imputed)	N
846	chr6	34243813	34243816	rs143188409	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.31	RP11-513I15.6, NUDT3	rs143188409-TG	NR	8E-16		0.0653231	[0.049-0.081] unit increase	Affymetrix [323123] (imputed)	N
846	chr6	34243813	34243815	rs10588956	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	6p21.31		rs10588956-G	NR	2E-12		0.0321	[0.023-0.041] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
846	chr6	34243813	34243813	rs756816162	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6p21.31	RP11-513I15.6, NUDT3	rs756816162-GAA	NR	5E-8		0.0447781	[0.029-0.061] unit increase	Affymetrix [321114] (imputed)	N
846	chr6	34244131	34244132	rs115245297	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	6p21.31	NUDT3	rs115245297-T	0.9566	3E-16		0.3148	[0.24-0.39] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
846	chr6	34244131	34244132	rs115245297	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	6p21.31	RP11-513I15.6	rs115245297-C	0.0469	3E-12		0.05828829	[0.042-0.075] unit decrease	Affymetrix [~ 2500000] (imputed)	N
846	chr6	34247046	34247047	rs77136196	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large HDL	115,082 European ancestry individuals	NA	6p21.31		rs77136196-C	0.954506	3E-9		0.0534167	[0.036-0.071] unit increase	NR [11722792] (imputed)	N
846	chr6	34247046	34247047	rs77136196	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large HDL particles	115,082 European ancestry individuals	NA	6p21.31		rs77136196-C	0.954506	5E-9		0.0526026	[0.035-0.07] unit increase	NR [11722792] (imputed)	N
846	chr6	34247046	34247047	rs77136196	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	6p21.31	RP11-513I15.6	rs77136196-T	0.045081	2E-12		0.037814032	[0.027-0.048] unit increase	Affymetrix [93095623] (imputed)	N
846	chr6	34247046	34247047	rs77136196	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6p21.31	RP11-513I15.6	rs77136196-T	0.045082	4E-19		0.048243128	[0.038-0.059] unit increase	Affymetrix [93095623] (imputed)	N
846	chr6	34247046	34247047	rs77136196	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6p21.31	RP11-513I15.6	rs77136196-T	0.045074	6E-14		0.040307254	[0.03-0.051] unit increase	Affymetrix [93095623] (imputed)	N
846	chr6	34247046	34247047	rs77136196	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes (adjusted for BMI)	50,409 European ancestry cases, 523,897 European ancestry controls	NA	6p21.31	HMGA1	rs77136196-T	0.042	2E-8		1.11	[1.07-1.16]	Affymetrix, Illumina [~ 27000000] (imputed)	N
846	chr6	34257614	34257615	rs573582724	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	6p21.31	NUDT3, RPS10-NUDT3	rs573582724-?	NR	8E-24		0.2513668	[0.2-0.3] unit decrease	Illumina [27896057] (imputed)	N
846	chr6	34270667	34270668	rs6930978	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.31		rs6930978-C	0.813	1E-9				Affymetrix [10369434] (imputed)	N
846	chr6	34302868	34302869	rs206936	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	6p21.31	NR	rs206936-A	NR	4E-10		0.019	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
846	chr6	34302868	34302869	rs206936	29381148	Gong J	2017-12-21	Int J Obes (Lond)	Trans-ethnic analysis of metabochip data identifies two new loci associated with BMI.	Body mass index	35,606 African American individuals, 26,048 Hispanic/Latino individuals, 22,466 Asian or Native Hawaiian ancestry individuals, 17,859 European ancestry individuals, 535 Native American individuals	NA	6p21.31	NUDT3	rs206936-A		1E-7		0.0045	unit decrease	Illumina [at least 200000]	N
846	chr6	34302868	34302869	rs206936	20935630	Speliotes EK	2010-10-10	Nat Genet	Association analyses of 249,796 individuals reveal 18 new loci associated with body mass index.	Body mass index	Up to 123,865 European ancestry individuals	Up to 125,931 European ancestry individuals	6p21.31	HMGA1, NUDT3	rs206936-G	0.21	3E-8		0.06	[0.02-0.10] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2800000] (imputed)	N
846	chr6	34305298	34305299	rs114563403	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.31	NUDT3, RPS10-NUDT3	rs114563403-C	NR	2E-10		0.0419537	[0.029-0.055] unit increase	Affymetrix [323858] (imputed)	N
846	chr6	34305298	34305299	rs114563403	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.31	NUDT3, RPS10-NUDT3	rs114563403-C	NR	2E-42		0.0807572	[0.069-0.092] unit increase	Affymetrix [319769] (imputed)	N
846	chr6	34305298	34305299	rs114563403	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.31	NUDT3, RPS10-NUDT3	rs114563403-C	NR	1E-11		0.044705	[0.032-0.058] unit increase	Affymetrix [127266] (imputed)	N
846	chr6	34305298	34305299	rs114563403	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.31	NUDT3, RPS10-NUDT3	rs114563403-C	NR	9E-47		0.0857315	[0.074-0.097] unit increase	Affymetrix [321114] (imputed)	N
846	chr6	34305298	34305299	rs114563403	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6p21.31	NUDT3, RPS10-NUDT3	rs114563403-C	NR	6E-13		0.0468255	[0.034-0.06] unit increase	Affymetrix [321114] (imputed)	N
846	chr6	34305298	34305299	rs114563403	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.31	NUDT3, RPS10-NUDT3	rs114563403-C	NR	2E-35		0.0744437	[0.063-0.086] unit increase	Affymetrix [321169] (imputed)	N
846	chr6	34305298	34305299	rs114563403	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p21.31	NR	rs114563403-?	NR	5E-6		0.0962	[0.055-0.137] unit decrease	Illumina [at least 560000] (imputed)	N
846	chr6	34305896	34305897	rs2237098	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.31	NUDT3, RPS10-NUDT3	rs2237098-T	NR	7E-9		0.0243372	[0.016-0.033] unit increase	Affymetrix [323123] (imputed)	N
846	chr6	34326035	34326035	rs71538235	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.31	NUDT3, RPS10-NUDT3	rs71538235-TACACAC	NR	6E-9		0.0456853	[0.03-0.061] unit increase	Affymetrix [323123] (imputed)	N
846	chr6	34335090	34335091	rs9469775	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	6p21.31	NR	rs9469775-T	0.194107	3E-10		0.077143	[0.053-0.101] unit increase	Affymetrix [21375087] (imputed)	N
846	chr6	34335284	34335285	rs12662905	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs non-severe)	86 Finnish ancestry male severe erosion cases, 50 Finnish ancestry female severe erosion cases, 817 Finnish ancestry male non-severe erosion controls, 991 Finnish ancestry female non-severe erosion controls	NA	6p21.31	NR	rs12662905-?	NR	3E-6				Illumina [NR] (imputed)	N
847	chr6	34349798	34349799	rs206920	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.31	NUDT3, RPS10-NUDT3	rs206920-G	NR	3E-10		0.024164	[0.017-0.032] unit increase	Affymetrix [321016] (imputed)	N
847	chr6	34354072	34354073	rs115447786	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	6p21.31		rs115447786-C	0.955	2E-13		0.19	[0.14-0.24] % increase	Affymetrix [NR] (imputed)	N
847	chr6	34362636	34362637	rs116594542	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.31	RPS10-NUDT3	rs116594542-G	NR	1E-23		0.051028	[0.041-0.061] unit increase	Affymetrix [319769] (imputed)	N
847	chr6	34364964	34364965	rs199746610	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	6p21.31	NR	rs199746610-C	0.966894	2E-9		0.0409365	[0.027-0.055] unit increase	Affymetrix [16585745] (imputed)	N
847	chr6	34371706	34371707	rs6935129	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	6p21.31	C6orf1, RPS10, NUDT3	rs6935129-A	0.303	2E-10		0.233	[-0.01788-0.48388] ml/min/1.73m2 decrease	Affymetrix, Illumina [at least 5248638] (imputed)	N
847	chr6	34371706	34371707	rs6935129	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Creatinine levels	142,097 Japanese ancestry individuals	NA	6p21.31	RPS10-NUDT3	rs6935129-?	NR	1E-8		0.0216	[0.014-0.029] unit decrease novel	Illumina [6108953] (imputed)	N
847	chr6	34372803	34372804	rs7775635	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs non-severe)	86 Finnish ancestry male severe erosion cases, 50 Finnish ancestry female severe erosion cases, 817 Finnish ancestry male non-severe erosion controls, 991 Finnish ancestry female non-severe erosion controls	NA	6p21.31	NR	rs7775635-?	NR	4E-6				Illumina [NR] (imputed)	N
847	chr6	34373648	34373649	rs12664016	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs non-severe)	86 Finnish ancestry male severe erosion cases, 50 Finnish ancestry female severe erosion cases, 817 Finnish ancestry male non-severe erosion controls, 991 Finnish ancestry female non-severe erosion controls	NA	6p21.31	NR	rs12664016-?	NR	2E-6				Illumina [NR] (imputed)	N
847	chr6	34378222	34378223	rs28847046	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	6p21.31	RPS10	rs28847046-C	0.3606	2E-8		5.644	NR z score decrease	Illumina [26237160] (imputed)	N
847	chr6	34388874	34388875	rs554380258	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	6p21.31	RPS10, RPS10-NUDT3	rs554380258-G	0.079314	1E-9		0.027156513	[0.018-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
847	chr6	34394684	34394684	rs34640359	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	6p21.31	NR	rs34640359-AT	0.811551	9E-9		0.048036	[0.031-0.065] unit decrease	Affymetrix [17914406] (imputed)	N
847	chr6	34395300	34395300	rs34894487	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.31	RPS10, RPS10-NUDT3	rs34894487-TA	0.847232	5E-11		0.02045269	[0.014-0.027] unit increase	Affymetrix [93095623] (imputed)	N
847	chr6	34398357	34398358	rs7752998	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		6p21.31	RPS10	rs7752998-A	0.206723	5E-9		0.0102464	[0.0068-0.0137] unit increase	Affymetrix [12370749]	N
847	chr6	34403274	34403275	rs185658283	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6p21.31		rs185658283-?	NR	4E-27				NR [~ 8900000] (imputed)	N
847	chr6	34405152	34405153	rs116539778	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	6p21.31		rs116539778-T	0.002664	4E-10		0.13966976	[0.096-0.183] unit increase	Affymetrix [93095623] (imputed)	N
847	chr6	34408578	34408579	rs9766229	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.31	RPS10	rs9766229-C	NR	1E-13		0.0542949	[0.04-0.069] unit increase	Affymetrix [321016] (imputed)	N
847	chr6	34411382	34411383	rs80138699	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6p21.31	NR	rs80138699-?	NR	6E-12				Affymetrix [~ 8270000] (imputed)	N
847	chr6	34415871	34415872	rs77998125	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	6p21.31		rs77998125-?	NR	2E-12				NR [~ 8900000] (imputed)	N
847	chr6	34428711	34428712	rs2894394	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.31	PACSIN1	rs2894394-A	NR	4E-8		0.0522458	[0.034-0.071] unit decrease	Affymetrix [321114] (imputed)	N
847	chr6	34439568	34439569	rs7757419	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	6p21.31	NR	rs7757419-A	NR	3E-10		0.021	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
847	chr6	34439568	34439569	rs7757419	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6p21.31	PACSIN1	rs7757419-T	0.18710000000000004	9E-6	(EA,women)	0.032	[0.018-0.046] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
847	chr6	34439568	34439569	rs7757419	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6p21.31	PACSIN1	rs7757419-T	0.1856	2E-6	(EA)	0.027	[0.016-0.038] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
847	chr6	34439568	34439569	rs7757419	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.31	PACSIN1	rs7757419-?	NR	2E-7	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
847	chr6	34439568	34439569	rs7757419	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.31	PACSIN1	rs7757419-?	NR	1E-6	(EA, women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
847	chr6	34439568	34439569	rs7757419	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.31	PACSIN1	rs7757419-T	0.1856	3E-7	(EA, women)	0.0333	[0.021-0.046] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
847	chr6	34439568	34439569	rs7757419	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.31	PACSIN1	rs7757419-T	0.1856	2E-8	(EA)	0.0283	[0.018-0.038] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
847	chr6	34444099	34444100	rs9394227	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6p21.31	NR	rs9394227-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
847	chr6	34444257	34444258	rs73405674	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.31	PACSIN1	rs73405674-A	NR	1E-9		0.0432011	[0.029-0.057] unit increase	Affymetrix [323123] (imputed)	N
847	chr6	34456631	34456632	rs115980554	30498476	Liu H	2018-11-15	Front Endocrinol (Lausanne)	Heritability and Genome-Wide Association Study of Plasma Cholesterol in Chinese Adult Twins.	High density lipoprotein cholesterol levels	139 Chinese ancestry dizygotic twin pairs	NA	6p21.31	PACSIN1	rs115980554-?		9E-6				Illumina [7405822] (imputed)	N
847	chr6	34468766	34468767	rs73405691	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6p21.31	NR	rs73405691-?	NR	3E-20				Affymetrix [~ 8270000] (imputed)	N
847	chr6	34468766	34468767	rs73405691	30367059	Teumer A	2018-10-26	Nat Commun	Genome-wide analyses identify a role for SLC17A4 and AADAT in thyroid hormone regulation.	Free thyroxine concentration	49,269 European ancestry individuals	up to 22,383 European ancestry individuals	6p21.31	PACSIN1	rs73405691-A	0.87	2E-7		0.056	unit increase (discovery)	Affymetrix, Illumina [8048941] (imputed)	N
848	chr6	34472202	34472203	rs138805085	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-to-hip ratio adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,049 whole genome sequenced individuals, 29,518 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,001 Mylopotamos (founder/genetic isolate) individuals, 867 Pomak (founder/genetic isolate) individuals	206,045 European ancestry individuals	6p21.31	PACSIN1	rs138805085-T	0.0936	2E-7		0.081	[0.05-0.112] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
848	chr6	34480064	34480065	rs114672114	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.31	PACSIN1	rs114672114-G	NR	3E-13		0.0390159	[0.029-0.049] unit increase	Affymetrix [323123] (imputed)	N
848	chr6	34490256	34490257	rs73746673	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p21.31	NR	rs73746673-?	NR	2E-6		0.1659	[0.097-0.235] unit increase	Illumina [at least 560000] (imputed)	N
848	chr6	34492667	34492668	rs72898495	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	6p21.31		rs72898495-?	NR	5E-8				NR [~ 8900000] (imputed)	N
848	chr6	34501685	34501686	rs78065686	32602732	Baldassari AR	2020-06-30	Circ Genom Precis Med	Multi-ethnic Genome-wide Association Study of Decomposed Cardioelectric Phenotypes Illustrates Strategies to Identify and Characterize Evidence of Shared Genetic Effects for Complex Traits.	Electrocardiographic traits (multivariate)	17,873 European ancestry individuals, 12,749 Hispanic individuals, 5,408 African American individuals, 315 Chinese-American individuals	NA	6p21.31	PACSIN1	rs78065686-?	NR	4E-6				Affymetrix, Illumina [22000000] (imputed)	N
848	chr6	34503438	34503439	rs11756280	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.31	PACSIN1	rs11756280-C	NR	6E-11		0.0312082	[0.022-0.041] unit increase	Affymetrix [321016] (imputed)	N
848	chr6	34509976	34509977	rs55899330	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6p21.31		rs55899330-G	0.984564	5E-8		0.0884835	[0.057-0.12] unit increase	NR [11722792] (imputed)	N
848	chr6	34509976	34509977	rs55899330	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6p21.31		rs55899330-G	0.984564	3E-8		0.0895387	[0.058-0.121] unit increase	NR [11722792] (imputed)	N
848	chr6	34509976	34509977	rs55899330	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6p21.31		rs55899330-G	0.984564	2E-8		0.0931909	[0.061-0.125] unit decrease	NR [11722792] (imputed)	N
848	chr6	34509976	34509977	rs55899330	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6p21.31		rs55899330-G	0.984564	3E-8		0.0908039	[0.059-0.123] unit decrease	NR [11722792] (imputed)	N
848	chr6	34509976	34509977	rs55899330	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6p21.31		rs55899330-G	0.984564	2E-8		0.0897143	[0.058-0.121] unit decrease	NR [11722792] (imputed)	N
848	chr6	34512088	34512089	rs56262607	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6p21.31	NR	rs56262607-?	NR	2E-12				Affymetrix [~ 8270000] (imputed)	N
848	chr6	34512088	34512089	rs56262607	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p21.31	NR	rs56262607-?	NR	2E-6		0.2856	[0.17-0.4] unit decrease	Illumina [at least 560000] (imputed)	N
848	chr6	34513265	34513266	rs3778076	33510140	Lin WY	2021-01-28	Nat Commun	Genome-wide association study identifies risk loci for progressive chronic lymphocytic leukemia.	Chronic lymphocytic leukemia (time to first treatment)	755 European ancestry individuals	87 individuals	6p21.31	SPDEF, C6ORF106	rs3778076-A	0.055	5E-8		1.99	[1.55-2.55]	Illumina [5199911] (imputed)	N
848	chr6	34513265	34513266	rs3778076	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.31	SPDEF	rs3778076-A	0.0593	1E-6		0.0666	[0.04-0.094] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
848	chr6	34514206	34514207	rs11757517	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	6p21.31	SPDEF	rs11757517-T	0.0594	4E-6		0.0642	[0.037-0.091] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
848	chr6	34517228	34517229	rs3798550	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Prostate cancer	11,599 European ancestry cases, 199,628 European ancestry controls, 5,672 East Asian ancestry cases, 84,660 East Asian ancestry controls	NA	6p21.31		rs3798550-A	NR	3E-10		0.0912	[0.063-0.12] unit decrease	Affymetrix, Illumina [25775424] (imputed)	N
848	chr6	34517228	34517229	rs3798550	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p21.31	NR	rs3798550-A	0.797586	5E-12				Affymetrix, Illumina [23467995] (imputed)	N
848	chr6	34517228	34517229	rs3798550	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	6p21.31	NR	rs3798550-A	0.818568	5E-8		0.0693613	[0.044-0.094] unit decrease	Affymetrix [21375087] (imputed)	N
848	chr6	34517427	34517428	rs3798548	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.31	SPDEF	rs3798548-C	NR	3E-11		0.0266716	[0.019-0.035] unit increase	Affymetrix [323123] (imputed)	N
848	chr6	34520266	34520267	rs3798544	27569725	Yang SK	2016-08-25	Gastroenterology	Identification of Loci at 1q21 and 16q23 That Affect Susceptibility to Inflammatory Bowel Disease in Koreans.	Inflammatory bowel disease	1,505 Korean ancestry cases, 4,041 Korean ancestry controls	1,989 Korean ancestry cases, 3,491 Korean ancestry controls	6p21.31	SPDEF, PACSIN1	rs3798544-A	0.2	1E-7		1.2	[NR]	Illumina [522285]	N
848	chr6	34523408	34523409	rs74822633	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.31	SPDEF	rs74822633-A	NR	2E-8		0.0672549	[0.044-0.091] unit decrease	Affymetrix [323123] (imputed)	N
848	chr6	34524697	34524698	rs2233632	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes (adjusted for BMI)	50,409 European ancestry cases, 523,897 European ancestry controls	NA	6p21.31	HMGA1	rs2233632-T	0.688	5E-7		1.04	[1.03-1.06]	Affymetrix, Illumina [~ 27000000] (imputed)	N
848	chr6	34530693	34530694	rs77770442	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.31	SPDEF	rs77770442-T	0.0188	8E-6		0.1171	[0.066-0.168] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
848	chr6	34532921	34532922	rs13194133	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.31	SPDEF	rs13194133-G	NR	4E-12		0.0301725	[0.022-0.039] unit decrease	Affymetrix [323123] (imputed)	N
848	chr6	34532921	34532922	rs13194133	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6p21.31	NR	rs13194133-?	NR	2E-12				Affymetrix [~ 8270000] (imputed)	N
848	chr6	34546559	34546560	rs2814982	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.31	RP3-391O22.3	rs2814982-T	NR	3E-16		0.0411572	[0.031-0.051] unit increase	Affymetrix [323123] (imputed)	N
848	chr6	34546559	34546560	rs2814982	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.31	NR	rs2814982-C	NR	3E-8		0.037	unit increase	Affymetrix [at least 7091467] (imputed)	N
848	chr6	34546559	34546560	rs2814982	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.31	NR	rs2814982-C	0.891	4E-7	(EA)	0.037	unit increase	Affymetrix [at least 7091467] (imputed)	N
848	chr6	34546559	34546560	rs2814982	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.31	NR	rs2814982-C	NR	3E-7		0.035	unit increase	Affymetrix [at least 7091467] (imputed)	N
848	chr6	34546559	34546560	rs2814982	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.31	NR	rs2814982-C	0.891	6E-6	(EA)	0.034	unit increase	Affymetrix [at least 7091467] (imputed)	N
848	chr6	34546559	34546560	rs2814982	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Total cholesterol levels	32,576 East Asian ancestry individuals, 187,365 European ancestry individuals	10,855 Chinese ancestry individuals	6p21.31	C6orf106	rs2814982-T	0.107	2E-13	(Trans-ethnic initial)	0.0441	[0.033-0.055] unit decrease (EA Beta values)	Affymetrix, Illumina [up to 1900000] (imputed)	N
848	chr6	34546559	34546560	rs2814982	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	6p21.31	C6orf106	rs2814982-T	0.12	4E-15		0.044	[NR] unit decrease	NR [NR] (imputed)	N
848	chr6	34546559	34546560	rs2814982	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	Cholesterol, total	100,184 European ancestry individuals	NA	6p21.31	C6orf106	rs2814982-T	0.11	5E-11		1.86	[1.21-2.51] mg/dL decrease	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
848	chr6	34548205	34548206	rs2744939	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	6p21.31		rs2744939-?	NR	5E-10				NR [~ 8900000] (imputed)	N
848	chr6	34548205	34548206	rs2744939	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	6p21.31		rs2744939-?	NR	3E-8				NR [~ 8900000] (imputed)	N
848	chr6	34549996	34549997	rs56350128	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.31	C6orf106	rs56350128-T	0.0657	1E-7		0.0774	[0.049-0.106] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
848	chr6	34551911	34551912	rs205284	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	Systemic lupus erythematosus	1,639 East Asian ancestry cases, 2,410 East Asian ancestry controls	NA			rs205284-T	NR	7E-12		0.3718	[0.27-0.48] unit increase	Illumina [NR] (imputed)	N
848	chr6	34552796	34552797	rs2814944	31754094	Pisanu C	2019-11-21	Transl Psychiatry	Evidence that genes involved in hedgehog signaling are associated with both bipolar disorder and high BMI.	Bipolar disorder or body mass index	20,352 European ancestry bipolar disorder cases, 31,358 European ancestry controls, 322,154 European ancestry individuals with BMI data.	NA	6p21.31	Intergenic	rs2814944-A	NR	4E-8		0.023	[0.015-0.031] unit increase	Illumina [2013566] (imputed)	N
848	chr6	34552796	34552797	rs2814944	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.31	NR	rs2814944-G	0.844	9E-6	(EA)	0.028	unit increase	Affymetrix [at least 7091467] (imputed)	N
848	chr6	34552796	34552797	rs2814944	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	6p21.31	C6orf106	rs2814944-A	0.1554	2E-11		0.0479	[0.034-0.062] unit increase	Affymetrix [at least 7947838] (imputed)	N
848	chr6	34552796	34552797	rs2814944	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	HDL cholesterol	99,900 European ancestry individuals	NA	6p21.31	C6orf106	rs2814944-A	0.16	4E-9		0.49	[0.29-0.69] mg/dL decrease	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
848	chr6	34553162	34553163	rs11970421	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.31	C6orf106	rs11970421-T	NR	4E-8		0.0319639	[0.021-0.043] unit decrease	Affymetrix [323123] (imputed)	N
848	chr6	34559596	34559597	rs74929281	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6p21.31	NR	rs74929281-?	NR	4E-17				Affymetrix [~ 8270000] (imputed)	N
848	chr6	34562676	34562677	rs2235571	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.31	C6orf106	rs2235571-G	NR	1E-9		0.0328993	[0.022-0.044] unit decrease	Affymetrix [321114] (imputed)	N
848	chr6	34562676	34562677	rs2235571	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6p21.31	NR	rs2235571-?	NR	1E-15				Affymetrix [~ 8270000] (imputed)	N
848	chr6	34563059	34563060	rs2744977	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	6p21.31	NR	rs2744977-G	0.140382	7E-9		0.0254041	[0.017-0.034] unit decrease	NR [19129689] (imputed)	N
848	chr6	34563163	34563164	rs205262	34187846	Ong JS	2021-06-29	Gut	Multitrait genetic association analysis identifies 50 new risk loci for gastro-oesophageal reflux, seven new loci for Barrett's oesophagus and provides insights into clinical heterogeneity in reflux diagnosis.	Gastroesophageal reflux disease	129,080 European ancestry cases, 473,524 European ancestry controls	462,753 cases, 1,127,474 controls	6p21.31	UHRF1BP1	rs205262-A	0.73	1E-10		0.035	unit decrease	NR [2324712] (imputed)	N
848	chr6	34563163	34563164	rs205262	33128006	Timmins IR	2020-10-30	Commun Biol	Genome-wide association study of self-reported walking pace suggests beneficial effects of brisk walking on health and survival.	Walking pace	450,967 European ancestry individuals	NA	6p21.31	C6orf106	rs205262-A	NR	4E-10		0.00880091	[0.006-0.0116] unit increase	Affymetrix [10061374] (imputed)	N
848	chr6	34563163	34563164	rs205262	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	6p21.31	NR	rs205262-A	NR	8E-13		0.02	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
848	chr6	34563163	34563164	rs205262	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	6p21.31	C6orf106	rs205262-A	0.694	3E-9				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
848	chr6	34563163	34563164	rs205262	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	6p21.31	C6orf106	rs205262-A	0.694	2E-7	(women)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
848	chr6	34563163	34563164	rs205262	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in non-smokers	77,279 European ancestry women, 47,280 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	6p21.31	C6orf106	rs205262-A	0.694	6E-9		0.0248	[0.016-0.033] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
848	chr6	34563163	34563164	rs205262	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in non-smokers	77,279 European ancestry women, 47,280 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	6p21.31	C6orf106	rs205262-A	0.694	3E-7	(women)	0.0291	[0.018-0.04] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
848	chr6	34563163	34563164	rs205262	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	6p21.31	C6orf106	rs205262-A	0.694	3E-9		0.0223	[0.015-0.03] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
848	chr6	34563163	34563164	rs205262	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	6p21.31	C6orf106	rs205262-A	0.694	3E-7	(women)	0.0255	[0.016-0.035] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
848	chr6	34563163	34563164	rs205262	26961502	Wood AR	2016-03-10	Diabetologia	Variants in the FTO and CDKAL1 loci have recessive effects on risk of obesity and type 2 diabetes, respectively.	Body mass index	29,925 British ancestry cases, 89,763 British ancestry controls	NA	6p21.31	C6orf106	rs205262-G	NR	2E-9	(additive model)	0.028	[0.018-0.038] unit increase	NR [9288881] (imputed)	N
848	chr6	34563163	34563164	rs205262	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	6p21.31	NR	rs205262-A	0.727194053237101	2E-14		0.023253435	unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
848	chr6	34563163	34563164	rs205262	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	6p21.31	C6orf106	rs205262-G	0.285	3E-10		0.021	[0.015-0.027] kg/m2 increase	Affymetrix, Illumina [2550021]	N
848	chr6	34563163	34563164	rs205262	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	6p21.31	C6orf106	rs205262-G	0.273	2E-10	(EA)	0.022	[0.015-0.029] kg/m2 increase	Affymetrix, Illumina [2550021]	N
848	chr6	34563163	34563164	rs205262	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	6p21.31	C6orf106	rs205262-G	0.272	2E-9	(EA, women)	0.027	[0.018-0.036] kg/m2 increase	Affymetrix, Illumina [2550021]	N
848	chr6	34563957	34563958	rs205260	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p21.31	NR	rs205260-C	0.661609	7E-25				Affymetrix, Illumina [22063850] (imputed)	N
848	chr6	34569719	34569720	rs2814973	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.31	C6orf106	rs2814973-T	0.1465	3E-13		0.0663	[0.048-0.084] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
848	chr6	34569813	34569814	rs9469813	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.31	C6orf106	rs9469813-C	NR	2E-8		0.0245087	[0.016-0.033] unit decrease	Affymetrix [321114] (imputed)	N
848	chr6	34569813	34569814	rs9469813	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.31	C6orf106	rs9469813-T	0.8715	2E-7		0.0534	[0.033-0.073] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
848	chr6	34574214	34574215	rs146469661	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.31	C6orf106	rs146469661-T	0.0201	5E-7		0.1263	[0.077-0.175] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
848	chr6	34577256	34577257	rs11754773	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6p21.31	C6orf106	rs11754773-G	NR	6E-11		0.0347112	[0.024-0.045] unit increase	Affymetrix [321114] (imputed)	N
848	chr6	34577256	34577257	rs11754773	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6p21.31	NR	rs11754773-?	NR	7E-12				Affymetrix [~ 8270000] (imputed)	N
848	chr6	34577256	34577257	rs11754773	31589552	Lind L	2019-10-07	Metab Syndr Relat Disord	Genome-Wide Association Study of the Metabolic Syndrome in UK Biobank.	Metabolic syndrome	291,107 European ancestry individuals	NA	6p21.31	C6orf106	rs11754773-G	0.0942279	5E-16		0.089294	[0.068-0.111] unit increase	Affymetrix [9463307] (imputed)	N
848	chr6	34578879	34578879	rs776436782	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	6p21.31		rs776436782-C,rs776436782-C	0.814375	5E-11		0.0339453	[0.024-0.044] unit increase	NR [11722792] (imputed)	N
848	chr6	34578879	34578879	rs776436782	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	6p21.31		rs776436782-C,rs776436782-C	0.814375	5E-11		0.0339453	[0.024-0.044] unit increase	NR [11722792] (imputed)	N
848	chr6	34578879	34578879	rs776436782	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in HDL	115,082 European ancestry individuals	NA	6p21.31		rs776436782-C,rs776436782-C	0.814375	2E-11		0.0324919	[0.023-0.042] unit increase	NR [11722792] (imputed)	N
848	chr6	34578879	34578879	rs776436782	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in HDL	115,082 European ancestry individuals	NA	6p21.31		rs776436782-C,rs776436782-C	0.814375	2E-11		0.0324919	[0.023-0.042] unit increase	NR [11722792] (imputed)	N
848	chr6	34580220	34580221	rs2744973	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	6p21.31		rs2744973-C	0.693151	5E-11		0.027928	[0.02-0.036] unit decrease	NR [11722792] (imputed)	N
848	chr6	34580220	34580221	rs2744973	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	6p21.31		rs2744973-C	0.693151	8E-9		0.025814	[0.017-0.035] unit decrease	NR [11722792] (imputed)	N
848	chr6	34580220	34580221	rs2744973	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	6p21.31		rs2744973-C	0.693151	6E-15		0.0310045	[0.023-0.039] unit increase	NR [11722792] (imputed)	N
848	chr6	34581635	34581636	rs2744971	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	6p21.31	C6orf106	rs2744971-G	0.15	8E-13		1.26	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
848	chr6	34582273	34582274	rs182503338	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	QRS duration in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	6p21.31	C6orf1	rs182503338-?	NR	8E-7				Affymetrix [5486770] (imputed)	N
848	chr6	34582273	34582274	rs182503338	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Chagas cardiomyopathy in Tripanosoma cruzi seropositivity	207 Brazilian ancestry cases, 306 Brazilian ancestry controls	NA	6p21.31	C6orf106	rs182503338-?	NR	1E-6				Affymetrix [5486770] (imputed)	N
848	chr6	34584950	34584951	rs2744968	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	6p21.31	NA	rs2744968-A	0.7889	6E-40		0.0273	[0.023-0.031] unit decrease	NR [~ 27400000] (imputed)	N
848	chr6	34589631	34589632	rs2744965	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	6p21.31	C6orf106	rs2744965-T	0.1452	9E-7		0.0573	[0.034-0.08] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
848	chr6	34592089	34592090	rs6907508	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	6p21.31		rs6907508-G	NR	7E-21		0.0339	[0.027-0.041] unit decrease	Affymetrix, Illumina [20536134] (imputed)	N
848	chr6	34592089	34592090	rs6907508	33830993	Johnston KJA	2021-04-08	PLoS Genet	Sex-stratified genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	387,649 British ancestry individuals	NA	6p21.31	C6orf106	rs6907508-?	NR	3E-8			[NR]	NR [NR] (imputed)	N
848	chr6	34592089	34592090	rs6907508	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	6p21.31	NOSTRIN, SPC25	rs6907508-?		4E-8				NR [7428630] (imputed)	N
848	chr6	34592089	34592090	rs6907508	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	6p21.31	C6orf106	rs6907508-A	0.884473	2E-17		0.0276231	[0.021-0.034] unit increase	Affymetrix [NR] (imputed)	N
848	chr6	34592089	34592090	rs6907508	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p21.31	NR	rs6907508-?		2E-8	(Genu of corpus callosum)			NR [8955960] (imputed)	N
848	chr6	34592089	34592090	rs6907508	31194737	Johnston KJA	2019-06-13	PLoS Genet	Genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	387,649 British ancestry individuals	NA	6p21.31	C6orf106	rs6907508-A	0.1146	1E-8		0.0217	[0.014-0.029] unit decrease	NR [NR]	N
848	chr6	34592089	34592090	rs6907508	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	6p21.31	C6orf106	rs6907508-G	NR	4E-7	(EA)			Affymetrix, Illumina [NR] (imputed)	N
848	chr6	34592089	34592090	rs6907508	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	6p21.31	C6orf106	rs6907508-G	NR	1E-8				Affymetrix, Illumina [NR] (imputed)	N
848	chr6	34592089	34592090	rs6907508	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	6p21.31	C6orf106	rs6907508-G	NR	3E-9				Affymetrix, Illumina [NR] (imputed)	N
848	chr6	34592089	34592090	rs6907508	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	6p21.31	C6orf106	rs6907508-G	NR	2E-7	(EA)			Affymetrix, Illumina [NR] (imputed)	N
848	chr6	34592089	34592090	rs6907508	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	6p21.31	C6orf106	rs6907508-G	NR	8E-10				Affymetrix, Illumina [NR] (imputed)	N
848	chr6	34592089	34592090	rs6907508	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	6p21.31	C6orf106	rs6907508-G	NR	2E-10	(EA)			Affymetrix, Illumina [NR] (imputed)	N
848	chr6	34592089	34592090	rs6907508	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	6p21.31	C6orf106	rs6907508-G	NR	6E-13				Affymetrix, Illumina [NR] (imputed)	N
848	chr6	34592089	34592090	rs6907508	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	6p21.31	C6orf106	rs6907508-G	NR	1E-12	(EA)			Affymetrix, Illumina [NR] (imputed)	N
848	chr6	34592089	34592090	rs6907508	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	6p21.31	C6orf106	rs6907508-G	NR	9E-6	(EA)	0.008	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
848	chr6	34592089	34592090	rs6907508	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	6p21.31	C6orf106	rs6907508-G	NR	6E-6		0.007	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
848	chr6	34592089	34592090	rs6907508	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	6p21.31	C6orf106	rs6907508-G	NR	4E-7		0.01044	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
848	chr6	34592089	34592090	rs6907508	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	6p21.31	C6orf106	rs6907508-A	0.888	3E-8		0.0244	[0.016-0.033] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
848	chr6	34593641	34593643	rs58219612	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	6p21.31		rs58219612-C	NR	2E-10		0.016	[0.011-0.021] unit increase	Affymetrix, Illumina [20529698] (imputed)	N
848	chr6	34595542	34595543	rs2263329	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	6p21.31		rs2263329-C	NR	6E-35		0.0266	[0.022-0.031] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
848	chr6	34595542	34595543	rs2263329	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	6p21.31	C6orf106	rs2263329-T	0.641185	8E-43		0.0272844	[0.023-0.031] unit increase	Affymetrix [NR] (imputed)	N
849	chr6	34603645	34603646	rs2492863	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	6p21.31	C6orf106, SNRPC, UHRF1BP1	rs2492863-A	0.139616	1E-9		0.01709	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
849	chr6	34603645	34603646	rs2492863	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	6p21.31	C6orf106, SNRPC, UHRF1BP1	rs2492863-A	0.139616	1E-16	(females)	0.03596	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
849	chr6	34603645	34603646	rs2492863	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	6p21.31	C6orf106, SNRPC, UHRF1BP1	rs2492863-A	0.139616	5E-16		0.02467	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
849	chr6	34603645	34603646	rs2492863	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	6p21.31	C6orf106, SNRPC, UHRF1BP1	rs2492863-A	0.139616	1E-24	(females)	0.04558	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
849	chr6	34603645	34603646	rs2492863	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	6p21.31	C6orf106, SNRPC, UHRF1BP1	rs2492863-A	0.139616	2E-6		0.01842	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
849	chr6	34603690	34603691	rs76967117	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of HDL particles	115,082 European ancestry individuals	NA	6p21.31		rs76967117-G	0.884922	5E-11		0.0400918	[0.028-0.052] unit increase	NR [11722792] (imputed)	N
849	chr6	34603690	34603691	rs76967117	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	6p21.31		rs76967117-A	NR	3E-13		0.0269	[0.02-0.034] unit decrease	Affymetrix, Illumina [20521447] (imputed)	N
849	chr6	34603690	34603691	rs76967117	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	6p21.31	ILRUN	rs76967117-G	0.885245	2E-26		0.00830717	[0.0067-0.0099] unit increase	Affymetrix [13995440] (imputed)	N
849	chr6	34603690	34603691	rs76967117	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	6p21.31	C6orf106	rs76967117-G	0.885343	2E-17		0.0277539	[0.021-0.034] unit increase	Affymetrix [NR] (imputed)	N
849	chr6	34616321	34616322	rs3800461	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total phospholipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	6p21.31		rs3800461-G	0.884934	3E-10		0.0388326	[0.027-0.051] unit increase	NR [11722792] (imputed)	N
849	chr6	34616321	34616322	rs3800461	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total concentration of lipoprotein particles	115,082 European ancestry individuals	NA	6p21.31		rs3800461-G	0.884934	4E-12		0.0424913	[0.031-0.054] unit increase	NR [11722792] (imputed)	N
849	chr6	34616321	34616322	rs3800461	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphatidylcholine levels	115,006 European ancestry individuals	NA	6p21.31		rs3800461-G	0.884923	1E-10		0.039177	[0.027-0.051] unit increase	NR [11722792] (imputed)	N
849	chr6	34616321	34616322	rs3800461	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	6p21.31	LOC101929243	rs3800461-G	0.885294	8E-18		0.00297436	[0.0023-0.0037] unit increase	Affymetrix [13995440] (imputed)	N
849	chr6	34616321	34616322	rs3800461	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	6p21.31	C6orf106	rs3800461-C	0.114873	3E-9		0.020585744	[0.014-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
849	chr6	34616321	34616322	rs3800461	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	6p21.31	C6orf106	rs3800461-G	0.88529	2E-34		0.0376633	[0.032-0.044] unit increase	Affymetrix [NR] (imputed)	N
849	chr6	34616321	34616322	rs3800461	28165464	Law PJ	2017-02-06	Nat Commun	Genome-wide association analysis implicates dysregulation of immunity genes in chronic lymphocytic leukaemia.	Chronic lymphocytic leukemia	4,478 European ancestry cases and 13,213 European ancestry controls.	1,722 European ancestry cases and 4,385 European ancestry controls.	6p21.31	C6orf106	rs3800461-C	0.11	2E-8		1.2	[1.13-1.28]	Affymetrix, Illumina [> 10000000] (imputed)	N
849	chr6	34618174	34618184	rs771012762	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.31	C6orf106	rs771012762-T	NR	3E-10		0.0291727	[0.02-0.038] unit decrease	Affymetrix [323123] (imputed)	N
849	chr6	34618892	34618893	rs2814993	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	6p21.31	C6orf106	rs2814993-A	0.1431	1E-11		0.061	[0.044-0.078] unit increase	NR [8041861] (imputed)	N
849	chr6	34618892	34618893	rs2814993	18391952	Weedon MN	2008-04-06	Nat Genet	Genome-wide association analysis identifies 20 loci that influence adult height.	Height	13,665 European ancestry individuals	16,482 European ancestry individuals	6p21.31	C6orf106	rs2814993-A	0.15	4E-12		0.09	[0.05-0.13] s.d. increase (males)	Affymetrix [402951]	N
849	chr6	34623904	34623905	rs112540634	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.31	C6orf106	rs112540634-T	NR	6E-31		0.0474047	[0.039-0.055] unit increase	Affymetrix [321016] (imputed)	N
849	chr6	34623904	34623905	rs112540634	34006833	Elvsashagen T	2021-05-18	Nat Commun	The genetic architecture of the human thalamus and its overlap with ten common brain disorders.	Posterior thalamic nuclei volume	30,114 white British ancestry individuals		6p21.31	C6orf106	rs112540634-T	0.1345	8E-11		0.0770786	[0.054-0.1] unit decrease	Affymetrix [8165723] (imputed)	N
849	chr6	34623904	34623905	rs112540634	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.31	C6orf106	rs112540634-T	0.136231	2E-19		0.029030865	[0.023-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
849	chr6	34623904	34623905	rs112540634	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6p21.31		rs112540634-?	NR	2E-159				NR [~ 8900000] (imputed)	N
849	chr6	34623904	34623905	rs112540634	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	6p21.31	C6orf106	rs112540634-T	0.1409	3E-11		0.0619	[0.044-0.08] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
849	chr6	34625210	34625211	rs2814998	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	6p21.31	NA	rs2814998-T	0.2085	3E-40		0.0259	[0.022-0.03] unit increase	NR [~ 27400000] (imputed)	N
849	chr6	34633068	34633069	rs151060048	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Sphingomyelin levels	115,006 European ancestry individuals	NA	6p21.31		rs151060048-CA	0.89068	2E-12		0.046025	[0.033-0.059] unit increase	NR [11722792] (imputed)	N
849	chr6	34633068	34633069	rs151060048	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large LDL	115,082 European ancestry individuals	NA	6p21.31		rs151060048-CA	0.89069	5E-8		0.0380679	[0.024-0.052] unit increase	NR [11722792] (imputed)	N
849	chr6	34633068	34633069	rs151060048	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in IDL	115,082 European ancestry individuals	NA	6p21.31		rs151060048-CA	0.89069	4E-8		0.0373069	[0.024-0.051] unit increase	NR [11722792] (imputed)	N
849	chr6	34633068	34633069	rs151060048	33830993	Johnston KJA	2021-04-08	PLoS Genet	Sex-stratified genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	387,649 British ancestry individuals	NA	6p21.31	C6orf106	rs151060048-?	NR	7E-9			[NR]	NR [NR] (imputed)	N
849	chr6	34633068	34633069	rs151060048	33830993	Johnston KJA	2021-04-08	PLoS Genet	Sex-stratified genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	209,093 British ancestry women	NA	6p21.31	C6orf106	rs151060048-CA	NR	5E-9		0.035	[0.023-0.047] unit decrease	NR [NR] (imputed)	N
849	chr6	34634952	34634953	rs2744948	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.31	C6orf106	rs2744948-G	NR	2E-12		0.0240813	[0.017-0.031] unit decrease	Affymetrix [319769] (imputed)	N
849	chr6	34634952	34634953	rs2744948	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6p21.31	NR	rs2744948-?	NR	3E-16				Affymetrix [~ 8270000] (imputed)	N
849	chr6	34634952	34634953	rs2744948	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6p21.31	NR	rs2744948-?	NR	9E-36				Affymetrix [~ 8270000] (imputed)	N
849	chr6	34634952	34634953	rs2744948	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	6p21.31		rs2744948-?	NR	5E-16				NR [~ 8900000] (imputed)	N
849	chr6	34639104	34639105	rs6916624	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	6p21.31	NR	rs6916624-?	NR	5E-9				Illumina [7760689] (imputed)	N
849	chr6	34645321	34645322	rs2064253	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.31	C6orf106	rs2064253-T	NR	2E-12		0.0241467	[0.017-0.031] unit decrease	Affymetrix [319769] (imputed)	N
849	chr6	34655817	34655818	rs11751920	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	6p21.31	NR	rs11751920-C	0.021808999999999967	3E-12		0.0282879	[0.021-0.036] unit increase	Affymetrix [16582621] (imputed)	N
849	chr6	34655817	34655818	rs11751920	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	6p21.31	NR	rs11751920-C	0.021808999999999967	2E-7		0.0227476	[0.014-0.031] unit increase	Affymetrix [16582614] (imputed)	N
849	chr6	34655817	34655818	rs11751920	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	6p21.31	NR	rs11751920-G	0.978246	5E-9		0.0605865	[0.04-0.081] unit increase	Affymetrix [16577424] (imputed)	N
849	chr6	34656721	34656722	rs2814949	32589924	Bi W	2020-06-23	Am J Hum Genet	A Fast and Accurate Method for Genome-Wide Time-to-Event Data Analysis and Its Application to UK Biobank.	Essential hypertension (time to event)	76,566 British ancestry cases, 206,305 British ancestry controls	NA	6p21.31	C6orf106	rs2814949-?	NR	9E-9				NR [~ 24000000] (imputed)	N
849	chr6	34658079	34658080	rs2744944	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hypothyroidism	30,155 European ancestry cases, 379,986 European ancestry controls, 1,114 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	6p21.31		rs2744944-C	NR	3E-10		0.0657	[0.045-0.086] unit decrease	Affymetrix, Illumina [25801083] (imputed)	N
849	chr6	34658565	34658565	rs59136961	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small LDL	115,082 European ancestry individuals	NA	6p21.31		rs59136961-A	0.143336	3E-8		0.0330428	[0.021-0.045] unit decrease	NR [11722792] (imputed)	N
849	chr6	34658565	34658565	rs59136961	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small HDL	115,082 European ancestry individuals	NA	6p21.31		rs59136961-A	0.143336	4E-10		0.0364988	[0.025-0.048] unit decrease	NR [11722792] (imputed)	N
849	chr6	34658565	34658565	rs59136961	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	6p21.31		rs59136961-A	0.143336	7E-9		0.0343293	[0.023-0.046] unit decrease	NR [11722792] (imputed)	N
849	chr6	34658565	34658565	rs59136961	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small HDL particles	115,082 European ancestry individuals	NA	6p21.31		rs59136961-A	0.143336	4E-8		0.0327964	[0.021-0.044] unit decrease	NR [11722792] (imputed)	N
849	chr6	34658565	34658565	rs59136961	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small HDL	115,082 European ancestry individuals	NA	6p21.31		rs59136961-A	0.143336	5E-9		0.0348011	[0.023-0.046] unit decrease	NR [11722792] (imputed)	N
849	chr6	34661448	34661449	rs9368828	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	6p21.31		rs9368828-T	NR	1E-34		0.0308	[0.026-0.036] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
849	chr6	34665678	34665678	rs3842139	30120083	Ferguson A	2018-08-14	EBioMedicine	Genome-Wide Association Study of Circadian Rhythmicity in 71,500 UK Biobank Participants and Polygenic Association with Mood Instability.	Relative amplitude of rest-activity cycles	77,440 European ancestry individuals	NA	6p21.31	Intergenic	rs3842139-?	NR	4E-7		0.002	unit decrease	Affymetrix [7969123] (imputed)	N
849	chr6	34668634	34668635	rs9368830	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	6p21.31	intergenic	rs9368830-T	0.574	4E-21		0.0277	[0.022-0.033] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
849	chr6	34677102	34677103	rs6932930	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	6p21.31	NA	rs6932930-A	0.785	1E-40		0.0257	[0.022-0.029] unit decrease	NR [~ 27400000] (imputed)	N
849	chr6	34683634	34683635	rs6938239	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	6p21.31	HMGA1	rs6938239-?	NR	6E-12	(Conditioned on rs2780226)		[NR]	Affymetrix, Illumina [2834208] (imputed)	N
849	chr6	34684383	34684384	rs12190067	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	6p21.31	RP11-140K17.2	rs12190067-A	0.095666	7E-10		0.02390015	[0.016-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
849	chr6	34688945	34688946	rs9366863	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		6p21.31	C6orf106	rs9366863-T	0.328032	9E-33		0.0173843	[0.015-0.02] unit increase	Affymetrix [12370749]	N
849	chr6	34688945	34688946	rs9366863	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	6p21.31		rs9366863-?	NR	2E-44				NR [~ 8900000] (imputed)	N
849	chr6	34689071	34689071	rs375132431	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	6p21.31		rs375132431-C,rs375132431-C	0.553499	5E-8		0.0226661	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
849	chr6	34689071	34689071	rs375132431	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	6p21.31		rs375132431-C,rs375132431-C	0.553499	5E-8		0.0226661	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
849	chr6	34689071	34689071	rs375132431	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	6p21.31		rs375132431-C,rs375132431-C	0.553499	2E-8		0.0250957	[0.016-0.034] unit decrease	NR [11722792] (imputed)	N
849	chr6	34689071	34689071	rs375132431	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	6p21.31		rs375132431-C,rs375132431-C	0.553499	2E-8		0.0250957	[0.016-0.034] unit decrease	NR [11722792] (imputed)	N
849	chr6	34689725	34689725	rs34265539	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	HDL cholesterol levels	115,082 European ancestry individuals	NA	6p21.31		rs34265539-A	0.35606	4E-12		0.0270418	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
849	chr6	34689725	34689725	rs34265539	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	6p21.31		rs34265539-A	0.356061	2E-8		0.0240768	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
849	chr6	34689725	34689725	rs34265539	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	6p21.31		rs34265539-A	0.35606	1E-10		0.0254147	[0.018-0.033] unit decrease	NR [11722792] (imputed)	N
849	chr6	34689725	34689725	rs34265539	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium HDL	115,082 European ancestry individuals	NA	6p21.31		rs34265539-A	0.35606	7E-10		0.0248425	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
849	chr6	34689725	34689725	rs34265539	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	6p21.31		rs34265539-A	0.35606	5E-12		0.0270304	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
849	chr6	34689725	34689725	rs34265539	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	6p21.31		rs34265539-A	0.35606	4E-10		0.0251081	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
849	chr6	34695147	34695148	rs79555446	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.31	RP11-140K17.2	rs79555446-C	NR	1E-10		0.0639917	[0.044-0.084] unit increase	Affymetrix [323123] (imputed)	N
849	chr6	34697113	34697114	rs2764209	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.31	RP11-140K17.2	rs2764209-A	NR	3E-21		0.0319724	[0.025-0.039] unit increase	Affymetrix [321016] (imputed)	N
849	chr6	34697113	34697114	rs2764209	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.31	RP11-140K17.2	rs2764209-A	NR	1E-19		0.0332369	[0.026-0.04] unit increase	Affymetrix [323123] (imputed)	N
849	chr6	34697113	34697114	rs2764209	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	HDL cholesterol	up to 62,166 European ancestry individuals	NA	6p21.31	SNRPC	rs2764209-T	0.77	6E-10		0.044	[0.03-0.058] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
849	chr6	34705883	34705884	rs113084959	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	6p21.31	SNRPC	rs113084959-T	0.0128598817061167	9E-6	(G_unclassified_P_Firmicutes_HB)	1.59816	[0.89-2.3] unit decrease	Illumina [7711310] (imputed)	N
849	chr6	34706357	34706358	rs6940215	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.31	RP3-375P9.2	rs6940215-A	NR	8E-10		0.0189421	[0.013-0.025] unit increase	Affymetrix [321016] (imputed)	N
849	chr6	34708900	34708901	rs2764203	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	6p21.31	SNRPC	rs2764203-G	0.143956	1E-7		1.06	[1.04-1.08]	NR [8126035] (imputed)	N
849	chr6	34711466	34711467	rs2764204	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	6p21.31		rs2764204-?	NR	2E-8				NR [~ 8900000] (imputed)	N
849	chr6	34714321	34714322	rs2764208	24871463	Armstrong DL	2014-05-29	Genes Immun	GWAS identifies novel SLE susceptibility genes and explains the association of the HLA region.	Systemic lupus erythematosus	725 European ancestry cases, 2,438 European ancestry controls	NA	6p21.31	SNRPC	rs2764208-G	0.35	7E-6		1.28	[1.203-1.36]	Illumina [NR]	N
849	chr6	34714839	34714840	rs146761142	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	Systemic lupus erythematosus	1,639 East Asian ancestry cases, 2,410 East Asian ancestry controls	NA			rs146761142-G	NR	2E-8		0.3809	[0.25-0.51] unit increase	Illumina [NR] (imputed)	N
849	chr6	34717577	34717578	rs61431557	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.31	RP3-375P9.2	rs61431557-T	NR	7E-43		0.0608248	[0.052-0.07] unit increase	Affymetrix [323123] (imputed)	N
849	chr6	34717577	34717578	rs61431557	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	6p21.31	intergenic	rs61431557-T	0.1368	4E-50		0.0408	[0.036-0.046] unit increase	Affymetrix [18391927] (imputed)	N
849	chr6	34728070	34728071	rs75398113	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large LDL	115,082 European ancestry individuals	NA	6p21.31		rs75398113-G	0.905469	2E-9		0.0419324	[0.028-0.056] unit increase	NR [11722792] (imputed)	N
849	chr6	34728070	34728071	rs75398113	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total esterified cholesterol levels	115,082 European ancestry individuals	NA	6p21.31		rs75398113-G	0.905469	1E-11		0.0464891	[0.033-0.06] unit increase	NR [11722792] (imputed)	N
849	chr6	34728070	34728071	rs75398113	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large LDL	115,082 European ancestry individuals	NA	6p21.31		rs75398113-G	0.905469	3E-9		0.04133	[0.028-0.055] unit increase	NR [11722792] (imputed)	N
849	chr6	34728070	34728071	rs75398113	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Docosahexaenoic acid levels	115,006 European ancestry individuals	NA	6p21.31		rs75398113-G	0.905448	3E-9		0.0399817	[0.027-0.053] unit increase	NR [11722792] (imputed)	N
849	chr6	34728070	34728071	rs75398113	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Degree of unsaturation	115,006 European ancestry individuals	NA	6p21.31		rs75398113-G	0.905448	3E-8		0.0372211	[0.024-0.05] unit increase	NR [11722792] (imputed)	N
849	chr6	34728070	34728071	rs75398113	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	6p21.31		rs75398113-G	0.905469	9E-11		0.0446678	[0.031-0.058] unit increase	NR [11722792] (imputed)	N
849	chr6	34728070	34728071	rs75398113	30677029	Riveros-McKay F	2019-01-24	PLoS Genet	Genetic architecture of human thinness compared to severe obesity.	Obese vs. thin	1,456 British ancestry obese children, 1,471 European ancestry thin adults	up to 7,526 British ancestry obese individuals, 7,962 obese individuals, up to 3,532 British ancestry thin individuals, 8,106 thin individuals	6p21.31	SNRPC	rs75398113-C	0.0803933	5E-9		1.3	[1.19-1.42]	Illumina [41266535] (imputed)	N
849	chr6	34729157	34729158	rs114863007	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in LDL	115,082 European ancestry individuals	NA	6p21.31		rs114863007-G	0.905475	2E-8		0.0396158	[0.026-0.053] unit increase	NR [11722792] (imputed)	N
849	chr6	34729157	34729158	rs114863007	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total free cholesterol levels	115,082 European ancestry individuals	NA	6p21.31		rs114863007-G	0.905475	2E-9		0.0418802	[0.028-0.055] unit increase	NR [11722792] (imputed)	N
849	chr6	34729157	34729158	rs114863007	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol levels	115,082 European ancestry individuals	NA	6p21.31		rs114863007-G	0.905475	4E-11		0.0454452	[0.032-0.059] unit increase	NR [11722792] (imputed)	N
849	chr6	34729157	34729158	rs114863007	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	LDL cholesterol levels	115,082 European ancestry individuals	NA	6p21.31		rs114863007-G	0.905475	7E-9		0.0410037	[0.027-0.055] unit increase	NR [11722792] (imputed)	N
849	chr6	34729157	34729158	rs114863007	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in LDL	115,082 European ancestry individuals	NA	6p21.31		rs114863007-G	0.905475	4E-9		0.0412998	[0.028-0.055] unit increase	NR [11722792] (imputed)	N
849	chr6	34729157	34729158	rs114863007	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large LDL	115,082 European ancestry individuals	NA	6p21.31		rs114863007-G	0.905475	4E-10		0.043907	[0.03-0.058] unit increase	NR [11722792] (imputed)	N
849	chr6	34729157	34729158	rs114863007	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in LDL	115,082 European ancestry individuals	NA	6p21.31		rs114863007-G	0.905475	1E-8		0.0402473	[0.026-0.054] unit increase	NR [11722792] (imputed)	N
849	chr6	34729157	34729158	rs114863007	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large LDL	115,082 European ancestry individuals	NA	6p21.31		rs114863007-G	0.905475	6E-10		0.043525	[0.03-0.057] unit increase	NR [11722792] (imputed)	N
849	chr6	34729157	34729158	rs114863007	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	6p21.31	SNRPC	rs114863007-?	NR	6E-15		0.0341	[0.026-0.042] unit decrease	Affymetrix [5701386] (imputed)	N
849	chr6	34729915	34729916	rs559621619	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	6p21.31	SNRPC	rs559621619-A	0.9968	2E-12		0.1268	[0.092-0.162] unit decrease	Affymetrix [18391927] (imputed)	N
849	chr6	34730394	34730395	rs34427075	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6p21.31	NR	rs34427075-?	NR	1E-17				Affymetrix [~ 8270000] (imputed)	N
850	chr6	34735882	34735883	rs3736896	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	6p21.31		rs3736896-T	0.794485	2E-11		0.0344865	[0.024-0.045] unit increase	NR [11722792] (imputed)	N
850	chr6	34742095	34742096	rs564051400	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6p21.31	NR	rs564051400-?	NR	4E-15				Affymetrix [~ 8270000] (imputed)	N
850	chr6	34745681	34745682	rs9296128	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.31	SNRPC	rs9296128-A	NR	4E-13		0.0220399	[0.016-0.028] unit increase	Affymetrix [321016] (imputed)	N
850	chr6	34754857	34754858	rs12110321	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.31	UHRF1BP1	rs12110321-A	NR	3E-11		0.0200933	[0.014-0.026] unit decrease	Affymetrix [319769] (imputed)	N
850	chr6	34754857	34754858	rs12110321	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.31	UHRF1BP1	rs12110321-A	NR	1E-11		0.020516	[0.015-0.026] unit decrease	Affymetrix [319769] (imputed)	N
850	chr6	34755311	34755312	rs142415291	33830993	Johnston KJA	2021-04-08	PLoS Genet	Sex-stratified genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	387,649 British ancestry individuals	NA	6p21.31	SNRPC, UHRF1BP1	rs142415291-?	NR	9E-9			[NR]	NR [NR] (imputed)	N
850	chr6	34763981	34763982	rs9469890	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	6p21.31	UHRF1BP1	rs9469890-T	0.142	1E-10		0.054	[0.038-0.07] unit increase	Affymetrix [7947838] (imputed)	N
850	chr6	34763981	34763982	rs9469890	23449627	Cousminer DL	2013-02-27	Hum Mol Genet	Genome-wide association and longitudinal analyses reveal genetic loci linking pubertal height growth, pubertal timing and childhood adiposity.	Pubertal anthropometrics	up to 5,043 European ancestry males, up to 5,756 European ancestry females	NA	6p21.31	C6orf106	rs9469890-C	0.88	9E-8	(Pubertal growth)	0.12	[0.077-0.163] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
850	chr6	34764921	34764922	rs6912327	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	6p21.31		rs6912327-T	0.785664	8E-9		0.0287686	[0.019-0.039] unit increase	NR [11722792] (imputed)	N
850	chr6	34764921	34764922	rs6912327	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting insulin	105,056 European ancestry individuals	NA	6p21.31	C6orf107, UHRF1BP1	rs6912327-C	0.216334	5E-6		0.014816	[0.0084-0.0212] unit decrease	Affymetrix, Illumina [8700000] (imputed)	N
850	chr6	34767267	34767268	rs74912731	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	6p21.31	UHRF1BP1	rs74912731-A	NR	3E-8		0.022313	[0.014-0.03] unit increase	Affymetrix [323858] (imputed)	N
850	chr6	34769764	34769765	rs4472337	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Waist circumference variance	347,158 European ancestry individuals	NA	6p21.31	UHRF1BP1	rs4472337-?	NR	6E-11				NR [5554549] (imputed)	N
850	chr6	34769764	34769765	rs4472337	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Waist circumference	347,158 European ancestry individuals	NA	6p21.31	UHRF1BP1	rs4472337-?	NR	2E-23				NR [5554549] (imputed)	N
850	chr6	34769764	34769765	rs4472337	28714975	Nelson CP	2017-07-17	Nat Genet	Association analyses based on false discovery rate implicate new loci for coronary artery disease.	Coronary artery disease (myocardial infarction, percutaneous transluminal coronary angioplasty, coronary artery bypass grafting, angina or chromic ischemic heart disease)	18,467 European and unknown ancestry cases, 45,264 European and unknown ancestry controls	57,347 European and unknown ancestry cases, 219,521 European and unknown ancestry controls	6p21.31	ANKS1A	rs4472337-T	0.155	2E-6		1.06	[1.03-1.08]	Affymetrix [9149595] (imputed)	N
850	chr6	34769764	34769765	rs4472337	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	6p21.31	UHRF1BP1	rs4472337-T	0.1616	2E-17		0.04212671	[0.032-0.052] unit decrease	Affymetrix [~ 2500000] (imputed)	N
850	chr6	34770150	34770150	rs150500834	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p21.31	UHRF1BP1	rs150500834-AT	0.162089	9E-14		0.0226838	[0.017-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
850	chr6	34773726	34773727	rs2395607	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6p21.31	UHRF1BP1	rs2395607-T	0.1724	4E-6	(EA)	0.0282	[0.016-0.04] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
850	chr6	34773726	34773727	rs2395607	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6p21.31	UHRF1BP1	rs2395607-T	0.172	2E-7	(EA,women)	0.0397	[0.025-0.055] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
850	chr6	34773726	34773727	rs2395607	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.31	UHRF1BP1	rs2395607-?	NR	5E-10	(EA, women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
850	chr6	34773726	34773727	rs2395607	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.31	UHRF1BP1	rs2395607-?	NR	3E-7	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
850	chr6	34773726	34773727	rs2395607	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.31	UHRF1BP1	rs2395607-T	0.1724	8E-8	(EA)	0.03	[0.019-0.041] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
850	chr6	34773726	34773727	rs2395607	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.31	UHRF1BP1	rs2395607-T	0.1724	2E-10	(EA, women)	0.0446	[0.031-0.058] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
850	chr6	34777575	34777576	rs12199648	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	6p21.31	NR	rs12199648-?	NR	5E-8	(right cerebellum exterior)			NR [9227495] (imputed)	N
850	chr6	34780105	34780105	rs531544016	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	6p21.31	UHRF1BP1	rs531544016-TA	0.313241	8E-20		0.022038564	[0.017-0.027] unit increase	Affymetrix [93095623] (imputed)	N
850	chr6	34785078	34785079	rs73419621	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	6p21.31		rs73419621-?	NR	1E-9				NR [~ 8900000] (imputed)	N
850	chr6	34793123	34793124	rs9469899	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	6p21.31		rs9469899-G	0.639933	4E-9		0.0246043	[0.016-0.033] unit decrease	NR [11722792] (imputed)	N
850	chr6	34793123	34793124	rs9469899	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	6p21.31		rs9469899-A	NR	3E-10		0.0564	[0.039-0.074] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
850	chr6	34793123	34793124	rs9469899	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Graves' disease	1,678 European ancestry cases, 456,942 European ancestry controls, 2,809 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	6p21.31		rs9469899-A	NR	4E-10		0.1453	[0.1-0.191] unit increase	Affymetrix, Illumina [25841587] (imputed)	N
850	chr6	34793123	34793124	rs9469899	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	6p21.31	NR	rs9469899-A	NR	8E-11		1.045	[1.03-1.06]	Affymetrix, Illumina [29235255] (imputed)	N
850	chr6	34793123	34793124	rs9469899	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	6p21.31	NR	rs9469899-A	0.3562	2E-20		0.023988724	[0.019-0.029] unit increase	Affymetrix [10549349] (imputed)	N
850	chr6	34793123	34793124	rs9469899	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	6p21.31	UHRF1BP1	rs9469899-A	0.358222	2E-9		0.057007816	[0.038-0.076] unit increase	Affymetrix [7288503] (imputed)	N
850	chr6	34793123	34793124	rs9469899	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer (advanced)	15,167 European ancestry cases, 58,308 European ancestry controls	NA	6p21.31	UHRF1BP1	rs9469899-A	NR	2E-6		1.07	[NR]	Illumina [20370935] (imputed)	N
850	chr6	34793123	34793124	rs9469899	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	6p21.31	UHRF1BP1	rs9469899-A	0.36	5E-9		1.05	[1.03-1.07]	Illumina [20370935] (imputed)	N
850	chr6	34793123	34793124	rs9469899	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	6p21.31	UHRF1BP1	rs9469899-A	0.3572	3E-15		0.002	[0.0014-0.0026] unit decrease	Affymetrix [15275733] (imputed)	N
850	chr6	34797240	34797241	rs9462027	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls	NA	6p21.31	UHRF1BP1, DEF6	rs9462027-?	NR	2E-8		1.15	[1.09-1.20]	Illumina [at least 5000000] (imputed)	N
850	chr6	34797240	34797241	rs9462027	27399966	Morris DL	2016-07-11	Nat Genet	Genome-wide association meta-analysis in Chinese and European individuals identifies ten new loci associated with systemic lupus erythematosus.	Systemic lupus erythematosus	1,659 Chinese ancestry cases, 3,398 Chinese ancestry controls, 4,036 European ancestry cases, 6,959 European ancestry controls	3,043 Chinese ancestry cases, 5,074 Chinese ancestry controls, 2,643 European ancestry cases, 9,032 European ancestry controls	6p21.31	UHRF1BP1	rs9462027-?	0.286	1E-10	(Chinese)	1.46	[NR]	NR [6344733] (imputed)	N
850	chr6	34797240	34797241	rs9462027	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	2,018 European ancestry cases, 6,925 European ancestry controls	6p21.31	UHRF1BP1	rs9462027-A		8E-9		1.14	[1.09-1.19]	Illumina [644674]	N
850	chr6	34797755	34797756	rs112283401	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	6p21.31		rs112283401-?	NR	4E-27				NR [~ 8900000] (imputed)	N
850	chr6	34800434	34800435	rs112563428	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	6p21.31		rs112563428-T	NR	7E-18		0.0297	[0.023-0.036] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
850	chr6	34800434	34800435	rs112563428	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	6p21.31	UHRF1BP1	rs112563428-T	NR	3E-10		0.0314085	[0.022-0.041] unit increase	Affymetrix [323858] (imputed)	N
850	chr6	34802109	34802110	rs35356162	32117775	Wu J	2020-02-11	Front Oncol	The Rare Variant rs35356162 in UHRF1BP1 Increases Bladder Cancer Risk in Han Chinese Population.	Bladder cancer	995 Han Chinese ancestry cases, 1,008 Han Chinese ancestry controls	2,404 Han Chinese ancestry cases, 3,639 Han Chinese ancestry controls	6p21.31	UHRF1BP1	rs35356162-T	0.0017	4E-7		4.332	[2.463-7.619]	Illumina [270241]	N
850	chr6	34812700	34812701	rs34840245	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	6p21.31	UHRF1BP1, DEF6	rs34840245-?	NR	2E-11		1.2	[1.14-1.27]	Illumina [at least 5000000] (imputed)	N
850	chr6	34816060	34816060	rs112465264	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6p21.31	UHRF1BP1	rs112465264-CA	NR	1E-10		0.0289036	[0.02-0.038] unit increase	Affymetrix [321114] (imputed)	N
850	chr6	34816069	34816070	rs71567468	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls	NA	6p21.31	DEF6, PPARD1	rs71567468-?	NR	9E-7		1.29	[1.17-1.43]	Illumina [at least 5000000] (imputed)	N
850	chr6	34817078	34817079	rs147499178	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.31	UHRF1BP1	rs147499178-T	NR	4E-22		0.0802751	[0.064-0.097] unit increase	Affymetrix [319769] (imputed)	N
850	chr6	34817078	34817079	rs147499178	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.31	UHRF1BP1	rs147499178-T	NR	7E-24		0.0836034	[0.067-0.1] unit increase	Affymetrix [319769] (imputed)	N
850	chr6	34817078	34817079	rs147499178	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.31	UHRF1BP1	rs147499178-T	NR	4E-22		0.0810823	[0.065-0.097] unit increase	Affymetrix [321114] (imputed)	N
850	chr6	34817078	34817079	rs147499178	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.31	UHRF1BP1	rs147499178-T	NR	2E-20		0.0777317	[0.061-0.094] unit increase	Affymetrix [321169] (imputed)	N
850	chr6	34817078	34817079	rs147499178	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6p21.31	NR	rs147499178-?	NR	4E-26				Affymetrix [~ 8270000] (imputed)	N
850	chr6	34817078	34817079	rs147499178	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6p21.31	NR	rs147499178-?	NR	4E-23				Affymetrix [~ 8270000] (imputed)	N
850	chr6	34823186	34823187	rs3734266	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	Systemic lupus erythematosus	1,639 East Asian ancestry cases, 2,410 East Asian ancestry controls	NA	6p21.31	NR	rs3734266-G	NR	4E-13				Illumina [NR] (imputed)	N
850	chr6	34823186	34823187	rs3734266	23273568	Yang W	2012-12-27	Am J Hum Genet	Meta-analysis followed by replication identifies loci in or near CDKN1B, TET3, CD80, DRAM1, and ARID5B as associated with systemic lupus erythematosus in Asians.	Systemic lupus erythematosus	1,656 Han Chinese ancestry cases, 3,394 Han Chinese ancestry controls	3,256 Han Chinese ancestry cases, 5,667 Han Chinese ancestry controls, 453 Thai ancestry cases, 963 Thai ancestry controls	6p21.31	UHRF1BP1	rs3734266-G	0.13	1E-12		1.56		Illumina [2100739] (imputed)	N
850	chr6	34824635	34824636	rs11755393	33493351	Song Q	2021-01-25	Rheumatology (Oxford)	Genome-wide association study on Northern Chinese identifies KLF2, DOT1L and STAB2 associated with systemic lupus erythematosus.	Systemic lupus erythematosus	4,734 Chinese ancestry cases, 9,425 Chinese ancestry controls, 4,576 European ancestry cases, 8,039 European ancestry controls	NA	6p21.31	UHRF1BP1	rs11755393-A	NR	2E-12		0.87	[0.83-0.91]	Illumina [3860730] (imputed)	N
850	chr6	34824635	34824636	rs11755393	33493351	Song Q	2021-01-25	Rheumatology (Oxford)	Genome-wide association study on Northern Chinese identifies KLF2, DOT1L and STAB2 associated with systemic lupus erythematosus.	Systemic lupus erythematosus	4,734 Chinese ancestry cases, 9,425 Chinese ancestry controls	NA	6p21.31	UHRF1BP1	rs11755393-A	0.523	1E-7		0.87	[0.82-0.92]	Illumina [at least 3860730] (imputed)	N
850	chr6	34824635	34824636	rs11755393	33493351	Song Q	2021-01-25	Rheumatology (Oxford)	Genome-wide association study on Northern Chinese identifies KLF2, DOT1L and STAB2 associated with systemic lupus erythematosus.	Systemic lupus erythematosus	4,576 European ancestry cases, 8,039 European ancestry controls	NA	6p21.31	UHRF1BP1	rs11755393-A	0.65	2E-6		0.87	[0.81-0.93]	Illumina [at least 3860730]	N
850	chr6	34824635	34824636	rs11755393	29273807	Turcot V	2017-12-22	Nat Genet	Protein-altering variants associated with body mass index implicate pathways that control energy intake and expenditure in obesity.	Body mass index	up to 449,889 European ancestry individuals, up to 29,398 South Asian ancestry individuals, up to 27,610 African American individuals, up to 8,839 East Asian individuals, up to 10,772 Hispanic ancestry individuals	up to 196,766 European ancestry individuals	6p21.31	UHRF1BP1, PACSIN1	rs11755393-G	0.3556	3E-26		0.0202	[0.016-0.024] unit increase	Illumina [246328]	N
850	chr6	34824635	34824636	rs11755393	19838195	Gateva V	2009-11-01	Nat Genet	A large-scale replication study identifies TNIP1, PRDM1, JAZF1, UHRF1BP1 and IL10 as risk loci for systemic lupus erythematosus.	Systemic lupus erythematosus	1,310 European ancestry cases, 7,859 European ancestry controls	1,963 European ancestry cases, 4,329 European ancestry controls	6p21.31	UHRF1BP1	rs11755393-G	0.35	2E-8		1.17	[1.10-1.24]	Illumina [~ 2100000] (imputed)	N
850	chr6	34825661	34825662	rs16894959	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p21.31	UHRF1BP1	rs16894959-T	0.844	6E-6	(EA, women)	0.0278	[0.016-0.04] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
850	chr6	34825661	34825662	rs16894959	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p21.31	UHRF1BP1	rs16894959-T	0.844	3E-8	(EA)	0.0262	[0.017-0.036] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
850	chr6	34825661	34825662	rs16894959	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p21.31	UHRF1BP1	rs16894959-T	0.8425	9E-10	(EA,men)	0.0433	[0.029-0.057] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
850	chr6	34825661	34825662	rs16894959	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p21.31	UHRF1BP1	rs16894959-T	0.8425	3E-6	(EA, women)	0.0298	[0.017-0.042] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
850	chr6	34825661	34825662	rs16894959	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p21.31	UHRF1BP1	rs16894959-T	0.8425	3E-13	(EA)	0.0362	[0.026-0.046] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
850	chr6	34825661	34825662	rs16894959	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p21.31	UHRF1BP1	rs16894959-T	0.842	8E-8	(EA, men)	0.0366	[0.023-0.05] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
850	chr6	34825661	34825662	rs16894959	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p21.31	UHRF1BP1	rs16894959-T	0.842	2E-8	(EA,women)	0.0366	[0.024-0.049] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
850	chr6	34825661	34825662	rs16894959	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p21.31	UHRF1BP1	rs16894959-T	0.842	1E-13	(EA)	0.0367	[0.027-0.046] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
850	chr6	34826039	34826040	rs200155060	29155802	Huckins LM	2017-07-25	Mol Psychiatry	Investigation of common, low-frequency and rare genome-wide variation in anorexia nervosa.	Anorexia nervosa	2,158 European ancestry female cases, 15 ,485 European ancestry controls	1,299 European ancestry cases, 3,733 European ancestry controls	6p21.31	UHRF1BP1	rs200155060-A	0.01	6E-6		0.18		Illumina [up to 524954]	N
850	chr6	34827084	34827085	rs9469913	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 157,516 European ancestry women, up to 180,131 African American, South Asian, East Asian and Hispanic ancestry women	up to 62,368 European ancestry women	6p21.31	UHRF1BP1	rs9469913-A	0.8474	3E-6		0.0251	[0.015-0.036] unit increase	Affymetrix, Illumina [at least 228985]	N
850	chr6	34827084	34827085	rs9469913	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	288,492 European ancestry individuals, up to 15,687 African American individuals, up to 29,315 South Asian ancestry individuals, up to 6,800 East Asian ancestry individuals, up to 4,075 Hispanic ancestry individuals	132,177 European ancestry individuals	6p21.31	UHRF1BP1	rs9469913-A	0.8471	1E-8		0.0207	[0.014-0.028] unit increase	Affymetrix, Illumina [at least 228985]	N
850	chr6	34827084	34827085	rs9469913	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	288,492 European ancestry individuals	132,177 European ancestry individuals	6p21.31	UHRF1BP1	rs9469913-A	0.8389	7E-8		0.0204	[0.013-0.028] unit increase	Affymetrix, Illumina [at least 228985]	N
850	chr6	34827084	34827085	rs9469913	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6p21.31	UHRF1BP1	rs9469913-T	0.18230000000000002	2E-7	(women)	0.0385	[0.024-0.053] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
850	chr6	34827084	34827085	rs9469913	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.31	UHRF1BP1	rs9469913-?	NR	2E-9	(women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
850	chr6	34827084	34827085	rs9469913	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.31	UHRF1BP1	rs9469913-?	NR	2E-6				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
850	chr6	34827084	34827085	rs9469913	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.31	UHRF1BP1	rs9469913-T	0.18230000000000002	2E-7		0.0277	[0.017-0.038] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
850	chr6	34827084	34827085	rs9469913	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.31	UHRF1BP1	rs9469913-T	0.18230000000000002	2E-10	(women)	0.0428	[0.03-0.056] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
850	chr6	34828552	34828553	rs6457796	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.31	UHRF1BP1	rs6457796-T	0.864	3E-22		0.808	[0.76-0.85]	Illumina [11270530] (imputed)	N
850	chr6	34828552	34828553	rs6457796	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	6p21.31	UHRF1BP1	rs6457796-C	0.268391	9E-11		0.016970707	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
850	chr6	34828552	34828553	rs6457796	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	6p21.31	NR	rs6457796-C	0.2687	1E-8		1.0395011	[1.03-1.05]	Affymetrix, Illumina [NR] (imputed)	N
850	chr6	34828552	34828553	rs6457796	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	6p21.31	NR	rs6457796-T	NR	5E-13		0.02	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
850	chr6	34828552	34828553	rs6457796	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	6p21.31	NR	rs6457796-T	0.72717305237299	1E-14		0.023165043	unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
850	chr6	34830753	34830754	rs1883638	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.31		rs1883638-C	0.839	7E-12				Affymetrix [10369434] (imputed)	N
850	chr6	34830753	34830754	rs1883638	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	6p21.31	UHRF1BP1	rs1883638-T	0.161326	6E-9		0.017576959	[0.012-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
850	chr6	34830753	34830754	rs1883638	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	6p21.31	NR	rs1883638-T	0.162053	1E-9		0.016791	[0.011-0.022] SD unit decrease	Affymetrix, Illumina [50036608] (imputed)	N
850	chr6	34831279	34831280	rs9462030	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	6p21.31	NR	rs9462030-C	0.670948	5E-25		0.020621	[0.017-0.025] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
850	chr6	34831760	34831761	rs9462031	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	6p21.31	UHRF1BP1	rs9462031-T	0.1553	3E-17		0.04316542	[0.033-0.053] unit decrease	Affymetrix [~ 2500000] (imputed)	N
850	chr6	34833494	34833495	rs9469918	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.31	UHRF1BP1	rs9469918-G	NR	2E-8		0.0160794	[0.01-0.022] unit decrease	Affymetrix [321016] (imputed)	N
850	chr6	34833494	34833495	rs9469918	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.31	UHRF1BP1	rs9469918-G	NR	8E-9		0.0179752	[0.012-0.024] unit decrease	Affymetrix [323123] (imputed)	N
850	chr6	34840397	34840398	rs3734261	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	Systemic lupus erythematosus	1,639 East Asian ancestry cases, 2,410 East Asian ancestry controls	NA			rs3734261-A	NR	2E-11		0.358	[0.25-0.46] unit increase	Illumina [NR] (imputed)	N
850	chr6	34845448	34845449	rs4646949	22581228	Manning AK	2012-05-13	Nat Genet	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting blood insulin (BMI interaction)	Up to 51,750 European ancestry individuals	Up to 33,823 European ancestry individuals	6p21.31	UHRF1BP1	rs4646949-T	0.7345	4E-8		0.001168	[-0.00013-0.00246] unit increase	Affymetrix, Illumina [~ 2400000] (imputed)	N
850	chr6	34845448	34845449	rs4646949	22581228	Manning AK	2012-05-13	Nat Genet	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting blood insulin	Up to 51,750 European ancestry individuals	Up to 33,823 European ancestry individuals	6p21.31	UHRF1BP1	rs4646949-T	0.7445	7E-6		0.0138	[0.0073-0.0203] unit increase	Affymetrix, Illumina [~ 2400000] (imputed)	N
850	chr6	34845647	34845648	rs2985	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p21.31	NR	rs2985-T	0.83808	2E-16				Affymetrix, Illumina [17210439] (imputed)	N
850	chr6	34846276	34846277	rs4646947	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6p21.31		rs4646947-?	NR	4E-25				NR [~ 8900000] (imputed)	N
850	chr6	34852149	34852150	rs4646930	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.31	TAF11	rs4646930-G	NR	6E-11		0.0263157	[0.018-0.034] unit decrease	Affymetrix [323123] (imputed)	N
850	chr6	34854176	34854179	rs113537892	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p21.31		rs113537892-A	0.765125	5E-9		0.0283802	[0.019-0.038] unit decrease	NR [11722792] (imputed)	N
850	chr6	34854176	34854179	rs113537892	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.31	TAF11	rs113537892-AAAAC	NR	8E-9		0.0196018	[0.013-0.026] unit decrease	Affymetrix [321114] (imputed)	N
851	chr6	34873818	34873819	rs9296138	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.31	ANKS1A	rs9296138-T	NR	1E-9		0.0465011	[0.031-0.062] unit decrease	Affymetrix [321114] (imputed)	N
851	chr6	34882625	34882626	rs143320464	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.31	ANKS1A	rs143320464-G	NR	2E-8		0.0692775	[0.045-0.094] unit increase	Affymetrix [319769] (imputed)	N
851	chr6	34889422	34889423	rs79834165	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.31	ANKS1A	rs79834165-C	NR	3E-9		0.0461778	[0.031-0.061] unit increase	Affymetrix [321016] (imputed)	N
851	chr6	34889422	34889423	rs79834165	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.31	ANKS1A	rs79834165-C	NR	1E-9		0.0512316	[0.035-0.068] unit increase	Affymetrix [323123] (imputed)	N
851	chr6	34898142	34898143	rs147004297	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	6p21.31	ANKS1A	rs147004297-T	NR	1E-8		0.0565352	[0.037-0.076] unit decrease	Affymetrix [323858] (imputed)	N
851	chr6	34898454	34898455	rs12205331	24262325	Dichgans M	2013-11-21	Stroke	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Coronary artery disease	33,398 cases, 75,726 controls	NA	6p21.31	ANKS1A	rs12205331-?	NR	6E-6		1.0753	[1.04-1.11]	Illumina [575000] (imputed)	N
851	chr6	34904583	34904584	rs847851	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	6p21.31	Intergenic	rs847851-?	NR	2E-7		1.442	[NR]	Affymetrix [492217] (imputed)	N
851	chr6	34906167	34906168	rs847848	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	6p21.31	ANKS1A	rs847848-C	0.145227	7E-16		0.025743525	[0.019-0.032] unit increase	Affymetrix [93095623] (imputed)	N
851	chr6	34906167	34906168	rs847848	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	6p21.31	NR	rs847848-T	0.853892	1E-16		0.022559	[0.017-0.028] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
851	chr6	34922438	34922439	rs3807051	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6p21.31	NR	rs3807051-?	NR	9E-9				Affymetrix [~ 8270000] (imputed)	N
851	chr6	34923863	34923864	rs847845	23144319	Lee Y	2012-11-08	Carcinogenesis	Prognostic implications of genetic variants in advanced non-small cell lung cancer: a genome-wide association study.	Non-small cell lung cancer	348 Korean ancestry cases	NA	6p21.31	ANKS1A	rs847845-?	NR	6E-6	(Dominant model)			Affymetrix [271817]	N
851	chr6	34927279	34927280	rs1535001	23740937	Martin JE	2013-06-10	Hum Mol Genet	A systemic sclerosis and systemic lupus erythematosus pan-meta-GWAS reveals new shared susceptibility loci.	Systemic lupus erythematosus and Systemic sclerosis	up to 2,761 European ancestry systemic sclerosis cases, 769 European ancestry systemic lupus erythematosus cases, 7,381 European ancestry controls	up to 1,578 European ancestry systemic sclerosis cases, 1,727 European ancestry systemic lupus erythematosus cases, 6,893 European ancestry controls	6p21.31	UHRF1BP1	rs1535001-?	NR	3E-7		1.184	[NR]	Illumina [NR]	N
851	chr6	34947253	34947254	rs35301716	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	6p21.31	ANKS1A	rs35301716-G	0.02784	3E-13		0.050065316	[0.037-0.063] unit decrease	Affymetrix [93095623] (imputed)	N
851	chr6	34958048	34958049	rs78030332	31151762	Gelernter J	2019-04-08	Biol Psychiatry	Genome-wide Association Study of Maximum Habitual Alcohol Intake in >140,000 U.S. European and African American Veterans Yields Novel Risk Loci.	Maximum habitual alcohol consumption	126,936 European ancestry individuals, 17,029 African American individuals	NA	6p21.31	NR	rs78030332-C	NR	8E-6	(AA)	0.206225	[0.12-0.3] unit increase	Affymetrix [up to 6007810] (imputed)	N
851	chr6	34975414	34975415	rs2140418	21529783	Heath AC	2011-04-27	Biol Psychiatry	A quantitative-trait genome-wide association study of alcoholism risk in the community: findings and implications.	Alcoholism (alcohol use disorder factor score)	2,062 European ancestry alcohol dependence cases, 6,692 European ancestry controls	3,393 European ancestry individuals	6p21.31	ANKS1	rs2140418-C	0.22	4E-6		0.101	[NR] unit increase	Illumina [~ 300000]	N
851	chr6	34975414	34975415	rs2140418	21529783	Heath AC	2011-04-27	Biol Psychiatry	A quantitative-trait genome-wide association study of alcoholism risk in the community: findings and implications.	Alcoholism (alcohol dependence factor score)	2,062 European ancestry alcohol dependence cases, 6,692 European ancestry controls	3,393 European ancestry individuals	6p21.31	ANKS1	rs2140418-C	0.22	4E-6		0.1	[NR] unit increase	Illumina [~ 300000]	N
851	chr6	34979340	34979341	rs1996912	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.31	ANKS1A	rs1996912-C	NR	8E-11		0.0216204	[0.015-0.028] unit decrease	Affymetrix [323123] (imputed)	N
852	chr6	34997605	34997606	rs2258604	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.31	ANKS1A	rs2258604-T	NR	7E-10		0.0185691	[0.013-0.024] unit decrease	Affymetrix [321114] (imputed)	N
852	chr6	35003602	35003603	rs2820232	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 117)	19,670 European ancestry individuals	NA	6p21.31		rs2820232-?	NR	1E-8				NR [9705931] (imputed)	N
852	chr6	35004818	35004819	rs12525532	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in IDL	115,082 European ancestry individuals	NA	6p21.31		rs12525532-C	0.632527	3E-8		0.0230085	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
852	chr6	35004818	35004819	rs12525532	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6p21.31	NR	rs12525532-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
852	chr6	35005083	35005084	rs13210323	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6p21.31	ANKS1A	rs13210323-C	NR	2E-8		0.0194532	[0.013-0.026] unit decrease	Affymetrix [321114] (imputed)	N
852	chr6	35005083	35005084	rs13210323	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.31	ANKS1A	rs13210323-C	NR	3E-16		0.0278925	[0.021-0.035] unit decrease	Affymetrix [323123] (imputed)	N
852	chr6	35005083	35005084	rs13210323	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6p21.31	NR	rs13210323-?	NR	3E-14				Affymetrix [~ 8270000] (imputed)	N
852	chr6	35005083	35005084	rs13210323	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.31	ANKS1A	rs13210323-A	0.7194	2E-10		0.0486	[0.034-0.064] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
852	chr6	35005083	35005084	rs13210323	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	6p21.31	ANKS1A	rs13210323-A	0.7176	2E-6				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
852	chr6	35005083	35005084	rs13210323	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	6p21.31	ANKS1A	rs13210323-A	0.7176	2E-6		0.0183	[0.011-0.026] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
852	chr6	35005083	35005084	rs13210323	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p21.31	ANKS1A	rs13210323-A	0.737	1E-8	(EA)	0.0216	[0.014-0.029] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
852	chr6	35005083	35005084	rs13210323	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	6p21.31	ANKS1A	rs13210323-A	0.73	8E-12		1.17	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
852	chr6	35006675	35006676	rs73403830	30690781	Pei YF	2019-02-28	J Bone Miner Res	Joint Association Analysis Identified 18 New Loci for Bone Mineral Density.	Total body bone mineral density (MTAG)	at least 66,628 individuals	NA	6p21.31	NR	rs73403830-A	0.97	4E-8		0.07	[0.046-0.094] unit increase	NR [9704453]	N
852	chr6	35006675	35006676	rs73403830	30690781	Pei YF	2019-02-28	J Bone Miner Res	Joint Association Analysis Identified 18 New Loci for Bone Mineral Density.	Heel bone mineral density (MTAG)	at least 142,487 individuals	NA	6p21.31	NR	rs73403830-A	0.97	2E-8		0.07	[0.046-0.094] unit increase	NR [9704453]	N
852	chr6	35009195	35009196	rs3800426	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	6p21.31	ANKS1A, TCP11	rs3800426-?		4E-10				NR [7428630] (imputed)	N
852	chr6	35009294	35009295	rs2820223	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	6p21.31	NR	rs2820223-C	0.4897	2E-9		0.01506694	[0.01-0.02] unit increase	Affymetrix [10549349] (imputed)	N
852	chr6	35009577	35009578	rs2820224	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	6p21.31		rs2820224-G	0.38	1E-29		11.31	z score increase	Affymetrix [9061022] (imputed)	N
852	chr6	35009577	35009578	rs2820224	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	6p21.31		rs2820224-G	0.38	2E-13		7.35	z score increase	Affymetrix [9061022] (imputed)	N
852	chr6	35009577	35009578	rs2820224	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	6p21.31		rs2820224-G	0.38	1E-13		7.44	z score increase	Affymetrix [9061022] (imputed)	N
852	chr6	35009577	35009578	rs2820224	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	6p21.31	NR	rs2820224-G	0.4127	1E-15				NR [9056863] (imputed)	N
852	chr6	35009802	35009803	rs72896273	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.31	ANKS1A	rs72896273-G	NR	2E-8		0.0313678	[0.02-0.042] unit decrease	Affymetrix [321016] (imputed)	N
852	chr6	35024482	35024483	rs78368810	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	Systemic lupus erythematosus	1,639 East Asian ancestry cases, 2,410 East Asian ancestry controls	NA			rs78368810-G	NR	8E-7		0.3322	[0.2-0.46] unit increase	Illumina [NR] (imputed)	N
852	chr6	35028790	35028791	rs820084	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	6p21.31	NR	rs820084-G	0.3847	6E-14				NR [9056863] (imputed)	N
852	chr6	35033853	35033854	rs820077	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	NA	6p21.31	UHRF1BP1	rs820077-G		1E-8		1.19	[NR]	Illumina [> 644674] (imputed)	N
852	chr6	35034799	35034800	rs17609940	21378990	Schunkert H	2011-03-06	Nat Genet	Large-scale association analysis identifies 13 new susceptibility loci for coronary artery disease.	Coronary heart disease	22,233 European ancestry cases, 64,762 European ancestry controls	56,682 European ancestry cases and controls	6p21.31	ANKS1A	rs17609940-G	0.75	1E-8		1.07	[1.05-1.10]	Affymetrix, Illumina [~ 2300000] (imputed)	N
852	chr6	35038414	35038415	rs820072	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.31	ANKS1A	rs820072-T	NR	4E-9		0.0249569	[0.017-0.033] unit decrease	Affymetrix [323123] (imputed)	N
852	chr6	35044056	35044057	rs2494097	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	6p21.31	NR	rs2494097-A	0.158003	6E-9		0.0160152	[0.011-0.021] unit increase	NR [NR]	N
852	chr6	35044743	35044744	rs78976311	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.31	ANKS1A	rs78976311-G	NR	1E-8		0.04416	[0.029-0.059] unit increase	Affymetrix [321016] (imputed)	N
852	chr6	35044743	35044744	rs78976311	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.31	ANKS1A	rs78976311-G	NR	2E-14		0.0635925	[0.047-0.08] unit increase	Affymetrix [323123] (imputed)	N
852	chr6	35047937	35047938	rs2762339	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	6p21.31		rs2762339-?	NR	3E-8				NR [~ 8900000] (imputed)	N
852	chr6	35049998	35049999	rs56340485	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6p21.31	NR	rs56340485-?	NR	8E-12				Affymetrix [~ 8270000] (imputed)	N
852	chr6	35056442	35056443	rs2005	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6p21.31	ANKS1A	rs2005-A	0.089	7E-6	(BMR RQ)	0.03	[NR] unit increase	Illumina [899892]	N
852	chr6	35057330	35057331	rs3822921	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	6p21.31	ANKS1A	rs3822921-A	NR	3E-9		0.0291556	[0.02-0.039] unit increase	Affymetrix [323858] (imputed)	N
852	chr6	35057330	35057331	rs3822921	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.31	ANKS1A	rs3822921-A	NR	1E-24		0.0480793	[0.039-0.057] unit increase	Affymetrix [323123] (imputed)	N
852	chr6	35058116	35058117	rs707968	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking cessation (MTAG)	up to 820,192 European ancestry individuals	NA	6p21.31	NR	rs707968-G	0.681	2E-8		0.00924491	[0.006-0.0125] unit increase	NR [9732723] (imputed)	N
852	chr6	35058116	35058117	rs707968	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking cessation	up to 547,219 European ancestry individuals	NA	6p21.31	NR	rs707968-G	0.681	3E-8		0.023270683	[0.015-0.031] unit increase	NR [~ 10000000] (imputed)	N
852	chr6	35065726	35065727	rs36110421	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Graves' disease	2,809 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	6p21.31		rs36110421-C	0.096190305	2E-8		0.28484097	[0.19-0.38] unit decrease	Illumina [13429311] (imputed)	N
852	chr6	35065726	35065727	rs36110421	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic sinusitis	4,617 East Asian ancestry cases, 152,226 East Asian ancestry controls	NA	6p21.31		rs36110421-C	0.096131101	2E-9		0.23249511	[0.16-0.31] unit decrease	Illumina [13426486] (imputed)	N
852	chr6	35065726	35065727	rs36110421	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.31	ANKS1A	rs36110421-C	NR	3E-15		0.0275029	[0.021-0.034] unit increase	Affymetrix [323123] (imputed)	N
852	chr6	35066045	35066046	rs9366876	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6p21.31		rs9366876-?	NR	8E-11				NR [~ 8900000] (imputed)	N
852	chr6	35076324	35076325	rs73405709	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.31	TCP11	rs73405709-A	0.9768	4E-6		0.1052	[0.06-0.15] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
852	chr6	35089810	35089811	rs2077750	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	6p21.31		rs2077750-G	0.79871	6E-9		0.0262762	[0.017-0.035] unit decrease	NR [11722792] (imputed)	N
852	chr6	35099093	35099094	rs34523546	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.31	TCP11	rs34523546-T	NR	3E-12		0.0303392	[0.022-0.039] unit increase	Affymetrix [321016] (imputed)	N
852	chr6	35100147	35100148	rs183400320	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6p21.31	NR	rs183400320-?	NR	3E-12				Affymetrix [~ 8270000] (imputed)	N
852	chr6	35114541	35114542	rs2038740	34450027	Boer CG	2021-08-24	Cell	Deciphering osteoarthritis genetics across 826,690 individuals from 9 populations.	Osteoarthritis of the hip or knee (with total joint replacement)	40,887 European ancestry cases, 327,689 European ancestry controls	NA	6p21.31		rs2038740-T	0.7218	6E-10		0.94317824	[0.92577907-0.960904412]	Affymetrix, Illumina [NR] (imputed)	N
852	chr6	35114541	35114542	rs2038740	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.31	TCP11	rs2038740-C	NR	4E-10		0.0211084	[0.014-0.028] unit decrease	Affymetrix [323123] (imputed)	N
852	chr6	35114910	35114911	rs9394274	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	6p21.31	TCP11, SCUBE3	rs9394274-?	NR	7E-8	(Hispanic)	1.34	[1.20-1.49]	Illumina [at least 5000000] (imputed)	N
852	chr6	35118235	35118236	rs9368849	25514360	Hansel NN	2014-12-16	Am J Respir Cell Mol Biol	Genome-Wide Association Study Identification of Novel Loci Associated with Airway Responsiveness in Chronic Obstructive Pulmonary Disease.	Airway responsiveness in chronic obstructive pulmonary disease	Up to 4,108 European American cases	NA	6p21.31	intergenic	rs9368849-T	0.317	5E-6	(Continuous PC20)	0.044	[NR] unit increase	Illumina [546355]	N
852	chr6	35121593	35121594	rs113056704	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.31	TCP11	rs113056704-G	NR	1E-8		0.052201	[0.034-0.07] unit increase	Affymetrix [321016] (imputed)	N
853	chr6	35131772	35131773	rs6934818	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.31	TCP11	rs6934818-C	0.1438	1E-8		0.055	[0.036-0.074] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
853	chr6	35133073	35133074	rs3800406	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	6p21.31	intergenic	rs3800406-A	0.8941	7E-13		0.0342	[0.025-0.044] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
853	chr6	35134728	35134729	rs28522747	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	6p21.31	TCP11, SCUBE3	rs28522747-A	0.118	1E-7		1.06	[1.04-1.08]	Affymetrix [9000000] (imputed)	N
853	chr6	35134728	35134729	rs28522747	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	6p21.31	TCP11, SCUBE3	rs28522747-A	NR	8E-9		1.062	[1.04-1.08]	Affymetrix [9000000] (imputed)	N
853	chr6	35138372	35138373	rs9394279	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	6p21.31		rs9394279-G	0.836	4E-22				Affymetrix [10369434] (imputed)	N
853	chr6	35139728	35139729	rs9368851	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	6p21.31		rs9368851-?	NR	4E-18				NR [~ 8900000] (imputed)	N
853	chr6	35142898	35142899	rs6457807	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	6p21.31	TCP11	rs6457807-T	0.825912	5E-22		0.0029603	[0.0024-0.0036] unit decrease	Affymetrix [13995440] (imputed)	N
853	chr6	35142898	35142899	rs6457807	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	6p21.31	TCP11	rs6457807-T	0.825639	1E-13		0.0185777	[0.014-0.023] unit decrease	Affymetrix [NR] (imputed)	N
853	chr6	35142898	35142899	rs6457807	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	6p21.31	intergenic	rs6457807-C	0.1741	3E-16		0.03834263	[0.029-0.048] unit increase	Affymetrix [~ 2500000] (imputed)	N
853	chr6	35142898	35142899	rs6457807	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	6p21.31	intergenic	rs6457807-C	0.1742	8E-11		0.03060834	[0.021-0.04] unit decrease	Affymetrix [~ 2500000] (imputed)	N
853	chr6	35143464	35143465	rs6457808	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	6p21.31	TCP11	rs6457808-G	0.981979	2E-9		0.0315026	[0.021-0.042] unit decrease	Affymetrix [12370749]	N
853	chr6	35153564	35153565	rs9348970	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	6p21.31	SCUBE3	rs9348970-C	0.18522700000000003	7E-10		1.0491855	[1.03328709619862-1.06532859183176]	NR [9572556] (imputed)	N
853	chr6	35154314	35154315	rs6457809	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	6p21.31		rs6457809-T	0.185497	5E-43		0.039332554	[0.034-0.045] unit increase	Affymetrix [93095623] (imputed)	N
853	chr6	35154786	35154787	rs1590381	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	6p21.31	TCP11, AY927475	rs1590381-?	NR	2E-6	(AA)	1.21	[1.12-1.30]	Illumina [at least 5000000] (imputed)	N
853	chr6	35157086	35157087	rs4713841	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Respiratory diseases	approximately 459,000 European ancestry individuals	NA	6p21.31		rs4713841-?	NR	2E-10				NR [~ 8900000] (imputed)	N
853	chr6	35162140	35162141	rs11755266	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6p21.31	NR	rs11755266-?	NR	3E-21				Affymetrix [~ 8270000] (imputed)	N
853	chr6	35163019	35163020	rs12193946	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.31	SCUBE3	rs12193946-T	NR	4E-9		0.0187332	[0.013-0.025] unit increase	Affymetrix [319769] (imputed)	N
853	chr6	35163019	35163020	rs12193946	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.31	SCUBE3	rs12193946-T	NR	5E-10		0.0199988	[0.014-0.026] unit increase	Affymetrix [321114] (imputed)	N
853	chr6	35166639	35166639	rs113861109	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.31	SCUBE3	rs113861109-TC	NR	1E-10		0.0258977	[0.018-0.034] unit decrease	Affymetrix [321016] (imputed)	N
853	chr6	35166639	35166639	rs113861109	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.31	SCUBE3	rs113861109-TC	NR	4E-11		0.0289655	[0.02-0.038] unit decrease	Affymetrix [323123] (imputed)	N
853	chr6	35168612	35168613	rs968828	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	6p21.31		rs968828-A	NR	6E-16		0.0196	[0.015-0.024] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
853	chr6	35187226	35187227	rs115453475	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6p21.31		rs115453475-?	NR	5E-19				NR [~ 8900000] (imputed)	N
853	chr6	35189635	35189636	rs9394283	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p21.31	NR	rs9394283-T	0.782567	6E-28				Affymetrix, Illumina [23114412] (imputed)	N
853	chr6	35190119	35190120	rs1041528	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	6p21.31		rs1041528-A	NR	3E-17		0.023	[0.018-0.028] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
853	chr6	35190119	35190120	rs1041528	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6p21.31	SCUBE3, RP3-329A5.8	rs1041528-T	NR	1E-8		0.0242487	[0.016-0.033] unit decrease	Affymetrix [321114] (imputed)	N
853	chr6	35196480	35196481	rs200236205	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Height	458,235 European ancestry individuals	NA	6p21.31		rs200236205-?	NR	7E-10		0.888218	[0.58-1.19] unit decrease	NR [9800000] (imputed)	N
853	chr6	35200349	35200350	rs1929848	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6p21.31	NR	rs1929848-?	NR	5E-10				Affymetrix [~ 8270000] (imputed)	N
853	chr6	35206552	35206553	rs732594	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.31	SCUBE3	rs732594-A	NR	3E-8		0.015645	[0.01-0.021] unit increase	Affymetrix [319769] (imputed)	N
853	chr6	35206552	35206553	rs732594	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6p21.31	NR	rs732594-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
853	chr6	35206552	35206553	rs732594	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6p21.31	NR	rs732594-?	NR	4E-9				Affymetrix [~ 8270000] (imputed)	N
853	chr6	35206552	35206553	rs732594	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6p21.31	NR	rs732594-?	NR	3E-23				Affymetrix [~ 8270000] (imputed)	N
853	chr6	35216541	35216542	rs74676654	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	6p21.31		rs74676654-A	0.09964	3E-19		0.0321985	[0.025-0.039] unit increase	Illumina [13479295] (imputed)	N
853	chr6	35216541	35216542	rs74676654	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	6p21.31	SCUBE3	rs74676654-?	NR	8E-16		0.04128065	[0.031-0.051] unit increase	Illumina [27896057] (imputed)	N
853	chr6	35222009	35222010	rs9394288	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	6p21.31	LOC101929285	rs9394288-T	0.2	3E-8				NR [> 9500000] (imputed)	N
853	chr6	35238153	35238154	rs3777742	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	6p21.31		rs3777742-T	NR	5E-14		0.0169	[0.013-0.021] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
853	chr6	35239469	35239470	rs4713847	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p21.31	NR	rs4713847-?	NR	5E-6		0.0474	[0.027-0.068] unit increase	Illumina [at least 560000] (imputed)	N
853	chr6	35243835	35243836	rs118173262	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	6p21.31	ZNF76	rs118173262-?	NR	7E-11		0.04403053	[0.031-0.057] unit decrease	Illumina [27896057] (imputed)	N
853	chr6	35246318	35246319	rs10484578	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.31	NR	rs10484578-A	0.628	4E-14		1.131	[1.1-1.16]	Illumina [11270530] (imputed)	N
853	chr6	35246902	35246903	rs6919534	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	6p21.31	ZNF76	rs6919534-A	0.869	8E-31		0.05	[0.042-0.058] unit increase	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
854	chr6	35259396	35259397	rs33959228	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	6p21.31	ZNF76	rs33959228-T	0.021987	5E-19		0.070226654	[0.055-0.086] unit decrease	Affymetrix [93095623] (imputed)	N
854	chr6	35259396	35259397	rs33959228	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	6p21.31	NR	rs33959228-C	0.9785	3E-9		0.0915	[0.061-0.122] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
854	chr6	35259396	35259397	rs33959228	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	6p21.31		rs33959228-?	NR	1E-10				NR [~ 8900000] (imputed)	N
854	chr6	35263554	35263555	rs1194	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	6p21.31	UHRF1BP1, DEF6	rs1194-?	NR	5E-7	(AA)	1.32	[1.19-1.48]	Illumina [at least 5000000] (imputed)	N
854	chr6	35266230	35266231	rs9380500	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p21.31	DEF6	rs9380500-C	0.824989	3E-27		0.03151091	[0.026-0.037] unit increase	Affymetrix [93095623] (imputed)	N
854	chr6	35266230	35266231	rs9380500	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	6p21.31	DEF6	rs9380500-C	0.825022	2E-23		0.028950764	[0.023-0.035] unit increase	Affymetrix [93095623] (imputed)	N
854	chr6	35266230	35266231	rs9380500	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.31	DEF6	rs9380500-C	0.824981	2E-23		0.029064287	[0.023-0.035] unit increase	Affymetrix [93095623] (imputed)	N
854	chr6	35266230	35266231	rs9380500	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	6p21.31		rs9380500-?	NR	1E-21				NR [~ 8900000] (imputed)	N
854	chr6	35274024	35274025	rs150348333	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.31	DEF6	rs150348333-C	NR	6E-9		0.0479245	[0.032-0.064] unit decrease	Affymetrix [321114] (imputed)	N
854	chr6	35278457	35278458	rs181798723	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.31	DEF6	rs181798723-T	NR	6E-9		0.073988	[0.049-0.099] unit increase	Affymetrix [321114] (imputed)	N
854	chr6	35278457	35278458	rs181798723	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6p21.31	NR	rs181798723-?	NR	1E-10				Affymetrix [~ 8270000] (imputed)	N
854	chr6	35278795	35278796	rs10755687	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x short total sleep time interaction (2df test)	3,007 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,474 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, up to 11,901 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,567 European ancestry controls, 4,047 Hispanic/Latino controls	up to 221 African American short sleepers, 629 East Asian ancestry short sleepers, up to 9,585 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 2,504 East Asian ancestry controls, up to 38,027 European ancestry controls, 10,061 Hispanic controls	6p21.31	C6orf106	rs10755687-?	NR	3E-10		0.005043	[0.0029-0.0072] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
854	chr6	35278923	35278924	rs12332985	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	41,389 African ancestry individuals	11,364 African ancestry individuals, 253,288 European ancestry individuals	6p21.31	DEF6	rs12332985-C	0.825	2E-15	(AA)	0.071	[0.053-0.089] unit increase	Affymetrix, Illumina [17972582] (imputed)	N
854	chr6	35278923	35278924	rs12332985	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	25,369 African ancestry women	8,449 African ancestry women, up to 253,288 European ancestry women	6p21.31	DEF6	rs12332985-C	0.826	7E-11	(AA)	0.071	[0.049-0.093] unit increase	Affymetrix, Illumina [19885954] (imputed)	N
854	chr6	35278923	35278924	rs12332985	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	16,021 African ancestry men	2,915 African ancestry men, up to 253,288 European ancestry men	6p21.31	DEF6	rs12332985-C	0.824	3E-7	(AA)	0.073	[0.046-0.1] unit increase	Affymetrix, Illumina [16055004] (imputed)	N
854	chr6	35280696	35280697	rs6938946	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	6p21.31	DEF6	rs6938946-C	0.16	5E-17		8.38	z-score increase	Affymetrix [4314223] (imputed)	N
854	chr6	35280970	35280971	rs6900530	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.31	DEF6	rs6900530-T	NR	3E-10		0.0546972	[0.038-0.072] unit decrease	Affymetrix [321016] (imputed)	N
854	chr6	35283957	35283958	rs13197551	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	6p21.31	DEF6	rs13197551-T	0.2	1E-11		6.8	z-score increase	Affymetrix [4312306] (imputed)	N
854	chr6	35285719	35285720	rs2395617	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	6p21.31	DEF6	rs2395617-A	0.122487	6E-11		0.0195711	[0.014-0.025] unit increase	Affymetrix [NR] (imputed)	N
854	chr6	35322762	35322763	rs7744392	23137000	Lin HJ	2012-11-09	Ophthalmic Genet	Novel susceptibility genes associated with diabetic cataract in a Taiwanese population.	Cataracts in type 2 diabetes	109 Han Chinese ancestry cases, 649 Han Chinese ancestry controls	NA	6p21.31	PPARD	rs7744392-G	NR	3E-6				Illumina [517401]	N
854	chr6	35323708	35323709	rs9942489	33045005	Vogelezang S	2020-10-12	PLoS Genet	Novel loci for childhood body mass index and shared heritability with adult cardiometabolic traits.	Childhood body mass index	39,620 European ancestry individuals	NA	6p21.31	PPARD	rs9942489-A	0.04	4E-6		0.097	[0.056-0.138] unit increase	Affymetrix, Illumina [8227808] (imputed)	N
854	chr6	35327354	35327355	rs4713853	33493351	Song Q	2021-01-25	Rheumatology (Oxford)	Genome-wide association study on Northern Chinese identifies KLF2, DOT1L and STAB2 associated with systemic lupus erythematosus.	Systemic lupus erythematosus	4,734 Chinese ancestry cases, 9,425 Chinese ancestry controls, 4,576 European ancestry cases, 8,039 European ancestry controls	NA	6p21.31	DEF6	rs4713853-A	NR	3E-12		1.18	[1.13-1.23]	Illumina [3860730] (imputed)	N
854	chr6	35327354	35327355	rs4713853	33493351	Song Q	2021-01-25	Rheumatology (Oxford)	Genome-wide association study on Northern Chinese identifies KLF2, DOT1L and STAB2 associated with systemic lupus erythematosus.	Systemic lupus erythematosus	4,734 Chinese ancestry cases, 9,425 Chinese ancestry controls	NA	6p21.31	DEF6	rs4713853-A	0.33	2E-8		1.17	[1.12-1.22]	Illumina [at least 3860730] (imputed)	N
854	chr6	35341849	35341850	rs9470004	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	6p21.31	NR	rs9470004-?	NR	3E-8		0.06221794	[0.04-0.084] unit decrease	Illumina [34656550] (imputed)	N
854	chr6	35341849	35341850	rs9470004	21998595	N'Diaye A	2011-10-06	PLoS Genet	Identification, replication, and fine-mapping of Loci associated with adult height in individuals of african ancestry.	Height	20,427 African ancestry individuals	Up to 16,436 African American individuals	6p21.31	PPARD	rs9470004-T	0.17	1E-11		0.081	[0.057-0.105] unit decrease	Affymetrix, Illumina [3310998] (imputed)	N
854	chr6	35343054	35343055	rs10080411	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	6p21.31	PPARD	rs10080411-C	0.076	1E-12		7.13	z-score increase	Affymetrix [4311822] (imputed)	N
854	chr6	35345813	35345814	rs9296149	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p21.31		rs9296149-?	NR	2E-12		0.0401859	[0.029-0.052] unit increase	Affymetrix [20259828] (imputed)	N
854	chr6	35351449	35351450	rs56807241	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.31	PPARD	rs56807241-C	NR	2E-8		0.0549827	[0.036-0.074] unit decrease	Affymetrix [323123] (imputed)	N
854	chr6	35355493	35355494	rs569429508	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	6p21.31	PPARD	rs569429508-C	0.164735	4E-20		0.029252565	[0.023-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
854	chr6	35357692	35357693	rs3798343	22179738	Lai HM	2011-12-16	Rheumatology (Oxford)	Gout and type 2 diabetes have a mutual inter-dependent effect on genetic risk factors and higher incidences.	Gout	20 Han Chinese ancestry male gout cases, 42 Han Chinese ancestry male controls	NA	6p21.31	PPARD	rs3798343-?		1E-7				Illumina [479403]	N
854	chr6	35361872	35361873	rs11962521	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.31	PPARD	rs11962521-C	NR	4E-8		0.0566288	[0.036-0.077] unit decrease	Affymetrix [321016] (imputed)	N
854	chr6	35362524	35362525	rs7769719	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.31		rs7769719-G	0.953	8E-15				Affymetrix [10369434] (imputed)	N
854	chr6	35363756	35363757	rs9658108	20195266	Adkins DE	2010-03-02	Mol Psychiatry	Genomewide pharmacogenomic study of metabolic side effects to antipsychotic drugs.	Response to antipsychotic treatment	421 European ancestry, 214 African American, and 103 cases	NA	6p21.31	PPARD	rs9658108-?	0.052	5E-7	(clozapine-glucose)			Affymetrix [492900]	N
854	chr6	35364533	35364534	rs9658111	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	6p21.31	PPARD	rs9658111-C	0.0483	8E-14		0.06281261	[0.046-0.079] unit decrease	Affymetrix [~ 2500000] (imputed)	N
854	chr6	35370727	35370728	rs2267666	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.31	PPARD	rs2267666-A	NR	8E-10		0.0219905	[0.015-0.029] unit decrease	Affymetrix [323123] (imputed)	N
854	chr6	35371623	35371624	rs7751726	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.31	PPARD	rs7751726-A	NR	4E-8		0.0475091	[0.031-0.064] unit increase	Affymetrix [321016] (imputed)	N
854	chr6	35378797	35378798	rs9658134	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.31	PPARD	rs9658134-A	NR	4E-11		0.0738945	[0.052-0.096] unit decrease	Affymetrix [321114] (imputed)	N
854	chr6	35378797	35378798	rs9658134	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6p21.31	NR	rs9658134-?	NR	2E-18				Affymetrix [~ 8270000] (imputed)	N
854	chr6	35378797	35378798	rs9658134	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6p21.31		rs9658134-?	NR	1E-95				NR [~ 8900000] (imputed)	N
854	chr6	35379769	35379770	rs9296151	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	6p21.31	PPARD	rs9296151-G	0.965477	5E-14		0.0375937	[0.028-0.047] unit increase	NR [13737936] (imputed)	N
854	chr6	35379769	35379770	rs9296151	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	6p21.31		rs9296151-?	NR	4E-16				NR [~ 8900000] (imputed)	N
854	chr6	35379769	35379770	rs9296151	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p21.31		rs9296151-?	NR	9E-17		0.0461263	[0.035-0.057] unit increase	Affymetrix [20259828] (imputed)	N
854	chr6	35379997	35379998	rs9658142	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	133,321 East Asian ancestry individuals	NA	6p21.31		rs9658142-A	0.032027	3E-8		0.0607604	[0.039-0.082] unit decrease	Illumina [13477433] (imputed)	N
854	chr6	35383026	35383027	rs146874451	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6p21.31	NR	rs146874451-?	NR	6E-19				Affymetrix [~ 8270000] (imputed)	N
854	chr6	35383026	35383027	rs146874451	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6p21.31	NR	rs146874451-?	NR	4E-17				Affymetrix [~ 8270000] (imputed)	N
854	chr6	35385242	35385243	rs2299871	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	6p21.31		rs2299871-T	NR	2E-9		0.0174	[0.012-0.023] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
854	chr6	35385242	35385243	rs2299871	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	6p21.31		rs2299871-T	NR	8E-9		0.017	[0.011-0.023] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
854	chr6	35386871	35386872	rs36018387	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	6p21.31		rs36018387-C	0.894905	1E-8		0.0379519	[0.025-0.051] unit increase	NR [11722792] (imputed)	N
854	chr6	35386871	35386872	rs36018387	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholines levels	115,006 European ancestry individuals	NA	6p21.31		rs36018387-C	0.894905	4E-11		0.0419222	[0.029-0.054] unit increase	NR [11722792] (imputed)	N
854	chr6	35386871	35386872	rs36018387	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Polyunsaturated fatty acid levels	115,006 European ancestry individuals	NA	6p21.31		rs36018387-C	0.894905	2E-13		0.0483242	[0.035-0.061] unit increase	NR [11722792] (imputed)	N
854	chr6	35386871	35386872	rs36018387	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphoglycerides levels	115,006 European ancestry individuals	NA	6p21.31		rs36018387-C	0.894905	3E-10		0.0401414	[0.028-0.053] unit increase	NR [11722792] (imputed)	N
854	chr6	35386871	35386872	rs36018387	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-6 fatty acid levels	115,006 European ancestry individuals	NA	6p21.31		rs36018387-C	0.894905	6E-13		0.0474307	[0.035-0.06] unit increase	NR [11722792] (imputed)	N
854	chr6	35386871	35386872	rs36018387	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Linoleic acid levels	115,006 European ancestry individuals	NA	6p21.31		rs36018387-C	0.894905	1E-11		0.0450876	[0.032-0.058] unit increase	NR [11722792] (imputed)	N
854	chr6	35386871	35386872	rs36018387	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein A1 levels	115,082 European ancestry individuals	NA	6p21.31		rs36018387-C	0.894905	4E-8		0.033856	[0.022-0.046] unit increase	NR [11722792] (imputed)	N
854	chr6	35386871	35386872	rs36018387	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6p21.31	PPARD	rs36018387-T	NR	1E-8		0.0284996	[0.019-0.038] unit increase	Affymetrix [321114] (imputed)	N
854	chr6	35386871	35386872	rs36018387	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.31	PPARD	rs36018387-T	NR	6E-19		0.0405651	[0.032-0.05] unit increase	Affymetrix [321016] (imputed)	N
854	chr6	35386871	35386872	rs36018387	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.31	PPARD	rs36018387-T	NR	2E-29		0.0560704	[0.046-0.066] unit increase	Affymetrix [323123] (imputed)	N
854	chr6	35386871	35386872	rs36018387	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6p21.31	NR	rs36018387-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
854	chr6	35386871	35386872	rs36018387	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.31	PPARD	rs36018387-T	0.1044	7E-8		0.0592	[0.038-0.081] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
854	chr6	35388757	35388758	rs2395622	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	6p21.31		rs2395622-?	NR	4E-11				NR [~ 8900000] (imputed)	N
855	chr6	35389998	35389999	rs2076168	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p21.31		rs2076168-?	NR	4E-10		0.0157943	[0.011-0.021] unit decrease	Affymetrix [20259828] (imputed)	N
855	chr6	35395009	35395010	rs3734254	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.31	PPARD	rs3734254-C	NR	6E-10		0.021529	[0.015-0.028] unit decrease	Affymetrix [321016] (imputed)	N
855	chr6	35395009	35395010	rs3734254	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	6p21.31	PPARD	rs3734254-T	0.7909	2E-33		0.0279	[0.023-0.032] unit increase	Affymetrix [18391927] (imputed)	N
855	chr6	35395577	35395578	rs1053046	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.31	PPARD	rs1053046-A	NR	2E-8		0.0430786	[0.028-0.058] unit decrease	Affymetrix [323123] (imputed)	N
855	chr6	35397341	35397342	rs7749479	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.31	PPARD	rs7749479-C	NR	2E-9		0.0419161	[0.028-0.056] unit decrease	Affymetrix [321016] (imputed)	N
855	chr6	35398552	35398553	rs185155428	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6p21.31		rs185155428-?	NR	5E-9				NR [~ 8900000] (imputed)	N
855	chr6	35402784	35402785	rs4713858	18391951	Gudbjartsson DF	2008-04-06	Nat Genet	Many sequence variants affecting diversity of adult human height.	Height	30,968 European ancestry individuals	8,541 European ancestry individuals	6p21.31	ANKS1A, TCP11, ZNF76, DEF6, SCUBE3	rs4713858-G	0.86	4E-8		6.8	[4.45-9.15] % s.d. increase	Affymetrix, Illumina [up to 304226]	N
855	chr6	35402804	35402805	rs6457821	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	6p21.31	PPARD/FANCE	rs6457821-A	0.02	2E-12		0.104	[NR] unit decrease	Affymetrix, Illumina [2834208] (imputed)	N
855	chr6	35404353	35404354	rs2206030	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.31	MKRNP2	rs2206030-T	NR	5E-9		0.0193781	[0.013-0.026] unit decrease	Affymetrix [321114] (imputed)	N
855	chr6	35404353	35404354	rs2206030	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6p21.31	MKRNP2	rs2206030-T	NR	2E-8		0.0202843	[0.013-0.027] unit decrease	Affymetrix [321114] (imputed)	N
855	chr6	35404353	35404354	rs2206030	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.31	MKRNP2	rs2206030-T	NR	2E-13		0.0261037	[0.019-0.033] unit decrease	Affymetrix [323123] (imputed)	N
855	chr6	35404353	35404354	rs2206030	23284291	Hancock DB	2012-12-20	PLoS Genet	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (smoking interaction)	50,047 European ancestry individuals	NA	6p21.31	PPARD, FANCE	rs2206030-T	NR	5E-7	(FEV1/FVC, Ever-smoking)			NR [~ 2500000] (imputed)	N
855	chr6	35418953	35418954	rs6907678	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.31	FANCE	rs6907678-T	0.4024	5E-6		0.0297	[0.017-0.042] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
855	chr6	35420966	35420967	rs11755391	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p21.31		rs11755391-?	NR	5E-9		0.0122178	[0.0081-0.0164] unit decrease	Affymetrix [20259828] (imputed)	N
855	chr6	35422275	35422276	rs12204518	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	6p21.31		rs12204518-?	NR	3E-8				NR [~ 8900000] (imputed)	N
855	chr6	35432653	35432654	rs56855829	30557369	Yodsurang V	2018-12-17	PLoS One	Genome-wide association study (GWAS) of ovarian cancer in Japanese predicted regulatory variants in 22q13.1.	Ovarian cancer	681 Japanese ancestry cases, 17,492 Japanese ancestry controls	NA	6p21.31	FANCE	rs56855829-C	0.0036	2E-6		3.8022811	[2.18-6.62]	Illumina [7521072] (imputed)	N
855	chr6	35439392	35439393	rs4711416	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	6p21.31	NA	rs4711416-T	0.1022	6E-10	(Female)	1.079	[1.06-1.1]	Affymetrix, Illumina [NR] (imputed)	N
855	chr6	35442121	35442122	rs41270066	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6p21.31	NR	rs41270066-?	NR	3E-10				Affymetrix [~ 8270000] (imputed)	N
855	chr6	35456826	35456827	rs72894776	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	6p21.31	TEAD3	rs72894776-T	0.1245	2E-15		0.0238	[0.018-0.03] unit increase	Affymetrix [18391927] (imputed)	N
855	chr6	35457726	35457727	rs72894778	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large HDL	115,082 European ancestry individuals	NA	6p21.31		rs72894778-C	0.914139	4E-8		0.0363509	[0.023-0.049] unit decrease	NR [11722792] (imputed)	N
855	chr6	35457726	35457727	rs72894778	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large HDL	115,082 European ancestry individuals	NA	6p21.31		rs72894778-C	0.914139	3E-8		0.0368982	[0.024-0.05] unit decrease	NR [11722792] (imputed)	N
855	chr6	35457726	35457727	rs72894778	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large HDL particles	115,082 European ancestry individuals	NA	6p21.31		rs72894778-C	0.914139	3E-8		0.0368295	[0.024-0.05] unit decrease	NR [11722792] (imputed)	N
855	chr6	35461866	35461867	rs72894781	30868120	Berghuis B	2019-01-17	Epilepsia Open	A genome-wide association study of sodium levels and drug metabolism in an epilepsy cohort treated with carbamazepine and oxcarbazepine.	Severe carbamazepine- or oxcarbazepine-induced hyponatremia in epilepsy	61 European ancestry cases, at least 804 European ancestry controls	NA	6p21.31	NR	rs72894781-?		7E-6		3.43	[2.01-5.87]	Illumina [NR]	N
855	chr6	35463054	35463055	rs10947552	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6p21.31	NR	rs10947552-?	NR	5E-9				Affymetrix [~ 8270000] (imputed)	N
855	chr6	35474072	35474073	rs12215920	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6p21.31	NR	rs12215920-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
855	chr6	35476561	35476562	rs11754612	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.31	TULP1	rs11754612-A	NR	4E-10		0.0301739	[0.021-0.04] unit increase	Affymetrix [323123] (imputed)	N
855	chr6	35477031	35477032	rs2064317	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6p21.31	NR	rs2064317-?	NR	4E-12				Affymetrix [~ 8270000] (imputed)	N
855	chr6	35477031	35477032	rs2064317	31097437	Plotnikov D	2019-05-16	Br J Ophthalmol	Association between birth weight and refractive error in adulthood: a Mendelian randomisation study.	Birth weight	188,039 European ancestry individuals	NA	6p21.31	NR	rs2064317-A	0.39	2E-9		0.02	[0.014-0.026] z score decrease	Affymetrix [up to 10400000] (imputed)	N
855	chr6	35477803	35477804	rs9688674	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	6p21.31		rs9688674-G	0.909341	2E-8		0.0373324	[0.024-0.05] unit decrease	NR [11722792] (imputed)	N
855	chr6	35477803	35477804	rs9688674	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	6p21.31		rs9688674-G	0.90934	1E-8		0.0364867	[0.024-0.049] unit decrease	NR [11722792] (imputed)	N
855	chr6	35478611	35478612	rs2273001	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	6p21.31		rs2273001-G	0.301009	3E-10		0.0251447	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
855	chr6	35479573	35479574	rs7764472	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	6p21.31	TULP1	rs7764472-?	NR	6E-9		0.541	[0.35-0.73] unit decrease	Affymetrix [11100000] (imputed)	N
855	chr6	35502201	35502202	rs9380516	22841784	Patin E	2012-07-26	Gastroenterology	Genome-wide association study identifies variants associated with progression of liver fibrosis from HCV infection.	Hepatitis C induced liver fibrosis	1,161 European ancestry HCV-infected individuals	1,181 European ancestry HCV-infected individuals	6p21.31	TULP1	rs9380516-T	0.17	5E-7	(Duration F0-1/F3-4, male)			Illumina [780650] (imputed)	N
855	chr6	35510372	35510373	rs189128136	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.31	RP3-340B19.3	rs189128136-T	NR	3E-13		0.076244	[0.056-0.097] unit increase	Affymetrix [321016] (imputed)	N
855	chr6	35510649	35510650	rs115661362	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6p21.31	NR	rs115661362-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
855	chr6	35514315	35514316	rs76837685	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	6p21.31		rs76837685-G	0.960459	3E-8		0.0527483	[0.034-0.071] unit decrease	NR [11722792] (imputed)	N
855	chr6	35514315	35514316	rs76837685	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	6p21.31		rs76837685-G	0.960459	5E-8		0.0522087	[0.033-0.071] unit decrease	NR [11722792] (imputed)	N
855	chr6	35517389	35517390	rs9800506	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.31		rs9800506-G	0.615	1E-12				Affymetrix [10369434] (imputed)	N
855	chr6	35517389	35517390	rs9800506	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	6p21.31	RP3-340B19.3	rs9800506-T	0.38457	1E-9		0.015227253	[0.01-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
855	chr6	35517389	35517390	rs9800506	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6p21.31	RP3-340B19.3	rs9800506-T	0.3846	1E-11		0.016774422	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
855	chr6	35517389	35517390	rs9800506	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	6p21.31		rs9800506-?	NR	4E-23				NR [~ 8900000] (imputed)	N
855	chr6	35517389	35517390	rs9800506	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	6p21.31	RP3-340B19.3	rs9800506-T	0.3856	7E-9		0.02130869	[0.014-0.029] unit increase	Affymetrix [~ 2500000] (imputed)	N
855	chr6	35519492	35519493	rs553772010	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	6p21.31	RP3-340B19.2	rs553772010-G	0.1139	4E-10		0.03513891	[0.024-0.046] unit decrease	Affymetrix [~ 2500000] (imputed)	N
856	chr6	35527713	35527714	rs6923449	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.31	RP3-340B19.2	rs6923449-T	0.6488	7E-6		0.0304	[0.017-0.044] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
856	chr6	35528377	35528378	rs6906359	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6p21.31	RP3-340B19.2	rs6906359-T	0.121786	4E-9		0.020183364	[0.013-0.027] unit increase	Affymetrix [93095623] (imputed)	N
856	chr6	35528689	35528690	rs113244441	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	6p21.31	intergenic	rs113244441-A	0.09	3E-7		0.058	[0.036-0.08] unit decrease	Affymetrix [7947838] (imputed)	N
856	chr6	35529024	35529025	rs6911621	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	6p21.31	FKBP5, MAPK13, TEAD3	rs6911621-T	0.349063	2E-16		0.026153	[0.02-0.032] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
856	chr6	35534370	35534371	rs6910300	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.31	FKBP5	rs6910300-A	NR	1E-8		0.0208257	[0.014-0.028] unit decrease	Affymetrix [323123] (imputed)	N
856	chr6	35536194	35536195	rs6457834	32581359	Saevarsdottir S	2020-06-24	Nature	FLT3 stop mutation increases FLT3 ligand level and risk of autoimmune thyroid disease.	Autoimmune thyroid disease	30,234 European ancestry cases, 724,172 European ancestry controls	NA	6p21.31	FKBP5	rs6457834-A	0.684	6E-13		1.0752687	[NR]	Affymetrix, Illumina [42900000] (imputed)	N
856	chr6	35537963	35537964	rs9380522	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	6p21.31		rs9380522-?	NR	1E-10				NR [~ 8900000] (imputed)	N
856	chr6	35538005	35538006	rs148558396	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	6p21.31	FKBP5	rs148558396-G	0.121471	3E-13		0.024687937	[0.018-0.031] unit increase	Affymetrix [93095623] (imputed)	N
856	chr6	35541057	35541058	rs12055438	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	6p21.31		rs12055438-C	0.287	5E-18				Affymetrix [10369434] (imputed)	N
856	chr6	35554070	35554071	rs140664762	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6p21.31		rs140664762-?	NR	5E-9				NR [~ 8900000] (imputed)	N
856	chr6	35554265	35554266	rs77612799	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	6p21.31	NR	rs77612799-?	NR	4E-8	(X4th ventricle)			NR [9227495] (imputed)	N
856	chr6	35562470	35562471	rs3798345	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	6p21.31	FKBP5	rs3798345-C	0.7945	1E-11		0.03005245	[0.021-0.039] unit increase	Affymetrix [~ 2500000] (imputed)	N
856	chr6	35569280	35569281	rs4713899	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	6p21.31	FKBP5	rs4713899-G	0.836292	2E-16		0.026025781	[0.02-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
856	chr6	35569280	35569281	rs4713899	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6p21.31	FKBP5	rs4713899-G	0.836282	3E-12		0.02206636	[0.016-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
856	chr6	35569561	35569562	rs16878812	31089142	Law PJ	2019-05-14	Nat Commun	Association analyses identify 31 new risk loci for colorectal cancer susceptibility.	Colorectal cancer	31,197 European ancestry cases, 61,770 European ancestry controls	NA	6p21.31	NR	rs16878812-A	NR	2E-9		1.11	[1.07-1.15]	Affymetrix, Illumina [> 10000000] (imputed)	N
856	chr6	35569561	35569562	rs16878812	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	6p21.31	FKBP5, TEAD3	rs16878812-A	0.8861	4E-8		1.08	[1.05-1.11]	Affymetrix, Illumina [16900397] (imputed)	N
856	chr6	35602971	35602972	rs7740395	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	6p21.31		rs7740395-?	NR	6E-9				NR [~ 8900000] (imputed)	N
856	chr6	35603118	35603119	rs7760951	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	6p21.31	FKBP5	rs7760951-C	0.8277	1E-11		0.03203658	[0.023-0.041] unit decrease	Affymetrix [~ 2500000] (imputed)	N
856	chr6	35603118	35603119	rs7760951	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	6p21.31	FKBP5	rs7760951-C	0.8278	1E-10		0.03076058	[0.021-0.04] unit decrease	Affymetrix [~ 2500000] (imputed)	N
856	chr6	35615129	35615130	rs1334894	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	6p21.31	FKBP5	rs1334894-T	0.0919	5E-8		0.0482	[0.031-0.065] unit decrease	Affymetrix [at least 7947838] (imputed)	N
856	chr6	35620549	35620550	rs6931118	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.31	FKBP5	rs6931118-T	0.666185	9E-21		0.021977043	[0.017-0.027] unit increase	Affymetrix [93095623] (imputed)	N
856	chr6	35624710	35624711	rs12197246	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6p21.31	NR	rs12197246-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
856	chr6	35630226	35630227	rs11333201	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	6p21.31	FKBP5	rs11333201-A	0.29915	4E-16		0.01982448	[0.015-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
857	chr6	35665195	35665196	rs4713911	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	6p21.31	FKBP5	rs4713911-C	0.678884	5E-13		0.017193072	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
857	chr6	35670151	35670151	rs148861980	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.31	FKBP5	rs148861980-AG	NR	4E-8		0.0194042	[0.013-0.026] unit increase	Affymetrix [321114] (imputed)	N
857	chr6	35682244	35682244	rs371107974	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hypothyroidism	30,155 European ancestry cases, 379,986 European ancestry controls, 1,114 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	6p21.31		rs371107974-CA	NR	7E-9		0.0766	[0.051-0.102] unit increase	Affymetrix, Illumina [25801083] (imputed)	N
857	chr6	35685954	35685955	rs12200498	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6p21.31		rs12200498-?	NR	5E-15				NR [~ 8900000] (imputed)	N
857	chr6	35687248	35687249	rs9348981	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	6p21.31	FKBP5, MAPK13, TEAD3	rs9348981-T	0.71028	2E-13		0.021002	[0.015-0.027] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
857	chr6	35687248	35687249	rs9348981	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Gamma glutamyl transferase levels in low alcohol consumption	8,716 individuals	NA	6p21.31	NR	rs9348981-?	NR	3E-6		0.0211	[0.012-0.03] unit decrease	Illumina [~ 7800000] (imputed)	N
857	chr6	35687936	35687937	rs77379145	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.31	FKBP5	rs77379145-A	NR	4E-13		0.0541834	[0.04-0.069] unit increase	Affymetrix [319769] (imputed)	N
857	chr6	35687936	35687937	rs77379145	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.31	FKBP5	rs77379145-A	NR	5E-14		0.0561903	[0.042-0.071] unit increase	Affymetrix [319769] (imputed)	N
857	chr6	35687936	35687937	rs77379145	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.31	FKBP5	rs77379145-A	NR	9E-10		0.0462863	[0.031-0.061] unit increase	Affymetrix [321169] (imputed)	N
857	chr6	35691435	35691436	rs114304008	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.31	FKBP5	rs114304008-C	NR	1E-11		0.0515032	[0.037-0.066] unit increase	Affymetrix [321114] (imputed)	N
857	chr6	35695590	35695591	rs28435135	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	6p21.31		rs28435135-?	NR	7E-11				NR [~ 8900000] (imputed)	N
857	chr6	35710831	35710832	rs78747147	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric bone mineral density (femoral neck)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	6p21.31	NR	rs78747147-C	0.065	6E-6		0.334581	[0.19-0.48] unit increase	Illumina [~ 6600000] (imputed)	N
857	chr6	35710831	35710832	rs78747147	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric bone mineral content (femoral neck)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	6p21.31	NR	rs78747147-C	0.065	1E-6		0.3289	[0.2-0.46] unit increase	Illumina [~ 6600000] (imputed)	N
857	chr6	35713089	35713090	rs75842115	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric bone mineral content (femoral neck)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	6p21.31	NR	rs75842115-C	0.168	2E-6	(Males)	0.282183	[0.17-0.4] unit increase	Illumina [~ 6600000] (imputed)	N
857	chr6	35713834	35713835	rs79354046	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.31	ARMC12	rs79354046-T	NR	1E-9		0.0387628	[0.026-0.051] unit increase	Affymetrix [319769] (imputed)	N
857	chr6	35713834	35713835	rs79354046	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.31	ARMC12	rs79354046-T	NR	8E-11		0.0414432	[0.029-0.054] unit increase	Affymetrix [319769] (imputed)	N
857	chr6	35716860	35716860	rs113444436	32564518	Ye J	2020-06-20	Clin Transl Med	Association between herpes simplex virus 1 exposure and the risk of depression in UK Biobank.	Depression x herpes simplex 1 infection interaction	1,464 British ancestry cases, 1,487 British ancestry controls	NA	6p21.31	ARMC12	rs113444436-?		2E-6	(additive)			NR [NR] (imputed)	N
857	chr6	35717042	35717043	rs2766547	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	6p21.31	ARMC12	rs2766547-A	0.5102	4E-9		0.02136286	[0.014-0.028] unit decrease	Affymetrix [~ 2500000] (imputed)	N
857	chr6	35751571	35751572	rs9380534	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.31	CLPS	rs9380534-A	0.602	4E-71	(Colipase, CLPS.5749.53.3)	0.45	[0.39-0.51] unit increase	Affymetrix [10572788] (imputed)	N
857	chr6	35751610	35751611	rs9380535	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.31	CLPS	rs9380535-C	0.59640625	6E-80	(CLPS, 5749_53_3)	0.4815759	[0.43-0.53] unit increase	Illumina [> 1000000] (imputed)	N
857	chr6	35753226	35753227	rs2766588	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CLPS	5,368 Icelandic ancestry individuals	NA	6p21.31		rs2766588-T	0.4012	7E-136		0.466471	[0.43-0.5] unit decrease	Illumina [7506463] (imputed)	N
857	chr6	35758695	35758696	rs1831031	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.31	NR	rs1831031-A	0.198	2E-45	(Colipase, CLPS.5749.53.3)	0.48	[0.42-0.54] unit increase	Affymetrix [10572788] (imputed)	N
857	chr6	35764539	35764540	rs2766594	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.31	NR	rs2766594-G	0.391	5E-43	(Colipase, CLPS.5749.53.3)	0.39	[0.33-0.45] unit increase	Affymetrix [10572788] (imputed)	N
857	chr6	35764838	35764839	rs116063149	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CLPS	5,368 Icelandic ancestry individuals	NA	6p21.31		rs116063149-A	0.02847	1E-38		0.75189	[0.64-0.87] unit increase	Illumina [7506463] (imputed)	N
857	chr6	35765176	35765177	rs3748048	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large HDL	115,082 European ancestry individuals	NA	6p21.31		rs3748048-G	0.751435	4E-8		0.0248055	[0.016-0.034] unit decrease	NR [11722792] (imputed)	N
857	chr6	35765738	35765739	rs2766598	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CLPS	5,368 Icelandic ancestry individuals	NA	6p21.31		rs2766598-C	0.4432	1E-141		0.473845	[0.44-0.51] unit increase	Illumina [7506463] (imputed)	N
857	chr6	35766317	35766317	rs10683521	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	6p21.31		rs10683521-G	0.783789	3E-8		0.0261983	[0.017-0.035] unit decrease	NR [11722792] (imputed)	N
857	chr6	35766317	35766317	rs10683521	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	6p21.31		rs10683521-G	0.783789	2E-8		0.0264718	[0.017-0.036] unit decrease	NR [11722792] (imputed)	N
857	chr6	35772026	35772027	rs9470103	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	6p21.31	LHFPL5	rs9470103-A	0.304728	1E-17		0.021277916	[0.016-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
857	chr6	35772026	35772027	rs9470103	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	6p21.31	LHFPL5	rs9470103-A	0.304663	2E-13		0.018091137	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
857	chr6	35772026	35772027	rs9470103	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6p21.31	LHFPL5	rs9470103-A	0.304666	1E-10		0.015903294	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
858	chr6	35788477	35788477	rs370778863	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6p21.31	LHFPL5	rs370778863-AAAAT	0.367989	5E-14		0.017874967	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
858	chr6	35791253	35791254	rs149225394	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	6p21.31	LHFPL5	rs149225394-T	0.326409	4E-9		0.014963207	[0.01-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
858	chr6	35800665	35800666	rs187618215	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.31	LHFPL5	rs187618215-G	NR	2E-9		0.0668967	[0.045-0.089] unit increase	Affymetrix [321016] (imputed)	N
858	chr6	35849937	35849938	rs7743898	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	6p21.31	SRPK1	rs7743898-C	0.298214	5E-15		0.019116366	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
858	chr6	35849937	35849938	rs7743898	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	6p21.31	SRPK1	rs7743898-C	0.298273	5E-34		0.024186	[0.02-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
858	chr6	35849937	35849938	rs7743898	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	6p21.31	SRPK1	rs7743898-C	0.298266	2E-35		0.029169638	[0.025-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
858	chr6	35857221	35857222	rs2395642	31251759	Swenson BR	2019-06-28	PLoS One	GWAS of QRS duration identifies new loci specific to Hispanic/Latino populations.	QRS duration	15,124 Hispanic or Latin American individuals	NA	6p21.31	SPRK1	rs2395642-T	0.16	5E-9		0.93	[0.68-1.18] ms increase	Affymetrix, Illumina [~ 21000000] (imputed)	N
858	chr6	35892437	35892438	rs12210988	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CLPS	5,368 Icelandic ancestry individuals	NA	6p21.31		rs12210988-A	0.2462	4E-46		0.311434	[0.27-0.35] unit increase	Illumina [7506463] (imputed)	N
858	chr6	35898117	35898118	rs111968111	30700811	Wigmore EM	2019-01-31	Pharmacogenomics J	Genome-wide association study of antidepressant treatment resistance in a population-based cohort using health service prescription data and meta-analysis with GENDEP.	Antidepressant treatment resistance (> 2 drugs prescribed)	250 European ancestry cases, 3,202 European ancestry controls, 109 cases, 668 controls	NA	6p21.31	SRPK1, SLC26A8	rs111968111-?		4E-7		3.0	[2.58-3.42]	NR [7120598] (imputed)	N
858	chr6	35901150	35901151	rs657036	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	6p21.31		rs657036-A	NR	3E-25		0.0238	[0.019-0.028] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
858	chr6	35901150	35901151	rs657036	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	6p21.31		rs657036-G	0.703	5E-15		0.09	[0.07-0.12] % increase	Affymetrix [NR] (imputed)	N
858	chr6	35901150	35901151	rs657036	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p21.31	NR	rs657036-A	0.270205	2E-34				Affymetrix, Illumina [20825802] (imputed)	N
858	chr6	35901150	35901151	rs657036	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	6p21.31		rs657036-?	NR	2E-29				NR [~ 8900000] (imputed)	N
858	chr6	35904030	35904031	rs613540	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6p21.31		rs613540-C	0.296424	2E-24		0.024824765	[0.02-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
858	chr6	35905945	35905946	rs638600	34050765	Zhang L	2021-05-29	J Clin Endocrinol Metab	Joint genome-wide association analyses identified 49 novel loci for age at natural menopause.	Age at menopause	181,219 European ancestry individuals, 43,861 East Asian ancestry individuals	NA	6p21.31		rs638600-A	0.62	4E-15		0.11	unit decrease	Illumina [2093892] (imputed)	N
858	chr6	35905945	35905946	rs638600	34050765	Zhang L	2021-05-29	J Clin Endocrinol Metab	Joint genome-wide association analyses identified 49 novel loci for age at natural menopause.	Age at menopause	181,219 European ancestry individuals	NA	6p21.31		rs638600-A	0.62	3E-13		0.11	unit decrease	Illumina [2398641] (imputed)	N
859	chr6	35916912	35916912	rs200347592	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		SLC26A8	rs200347592-?	NR	6E-13		2.66544	[NR] unit decrease	Affymetrix [NR] (imputed)	N
859	chr6	35939146	35939146	rs35903333	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	6p21.31	SLC26A8	rs35903333-CT	0.2227	2E-18		0.0199	[0.015-0.024] unit decrease	Affymetrix [18391927] (imputed)	N
859	chr6	35939505	35939506	rs540188223	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6p21.31	NR	rs540188223-?	NR	1E-10				Affymetrix [~ 8270000] (imputed)	N
859	chr6	35993905	35993906	rs3761980	28672053	Meng W	2017-07-03	Br J Dermatol	A genome-wide association study suggests that MAPK14 is associated with diabetic foot ulcers.	Foot ulcer in diabetes and neuropathy	662 European ancestry type 2 diabetes cases, 37 European ancestry type 1 diabetes cases, 2,584 European ancestry type 2 diabetes controls, 111 European ancestry type 1 diabetes controls	NA	6p21.31	MAPK14	rs3761980-C	NR	9E-8	(Type 2 diabetes)			Affymetrix, Illumina [6706850] (imputed)	N
859	chr6	35998387	35998388	rs80028505	28672053	Meng W	2017-07-03	Br J Dermatol	A genome-wide association study suggests that MAPK14 is associated with diabetic foot ulcers.	Foot ulcer in diabetes and neuropathy	662 European ancestry type 2 diabetes cases, 37 European ancestry type 1 diabetes cases, 2,584 European ancestry type 2 diabetes controls, 111 European ancestry type 1 diabetes controls	NA	6p21.31	MAPK14	rs80028505-T	0.09	3E-8		1.71	[1.41-2.06]	Affymetrix, Illumina [6706850] (imputed)	N
859	chr6	36009831	36009833	rs386700170	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Rheumatoid arthritis	8,255 European ancestry cases, 409,001 European ancestry controls, 5,348 East Asian ancestry cases, 173,268 East Asian ancestry controls	NA	6p21.31		rs386700170-T	NR	1E-8		0.1191	[0.078-0.16] unit decrease	Affymetrix, Illumina [25835038] (imputed)	N
859	chr6	36010674	36010682	rs148342137	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	41,389 African ancestry individuals	11,364 African ancestry individuals, 253,288 European ancestry individuals	6p21.31	MAPK14	rs148342137-?	0.753	4E-9	(AA)	0.051	[0.033-0.069] unit increase	Affymetrix, Illumina [17972582] (imputed)	N
859	chr6	36010674	36010682	rs148342137	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	16,021 African ancestry men	2,915 African ancestry men, up to 253,288 European ancestry men	6p21.31	MAPK14	rs148342137-?	0.751	9E-8	(AA)	0.071	[0.046-0.096] unit increase	Affymetrix, Illumina [16055004] (imputed)	N
859	chr6	36039430	36039431	rs61212706	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.31	MAPK14	rs61212706-T	NR	2E-8		0.0269404	[0.018-0.036] unit increase	Affymetrix [321114] (imputed)	N
860	chr6	36089049	36089050	rs877596	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	6p21.31		rs877596-T	0.354	8E-9		0.007	[0.005-0.009] unit increase	NR [NR] (imputed)	N
860	chr6	36098190	36098191	rs12210904	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.31	MAPK13	rs12210904-A	0.289	2E-21	(Mitogen-activated protein kinase 13, MAPK13.5006.71.1)	0.25	[0.19-0.31] unit increase	Affymetrix [10572788] (imputed)	N
860	chr6	36113597	36113598	rs10447396	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.31	MAPK13	rs10447396-G	0.7503125	1E-11	(MAPK13, 5006_71_1)	0.1959629	[0.14-0.25] unit decrease	Illumina [> 1000000] (imputed)	N
860	chr6	36149247	36149248	rs9462162	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.31	RP1-179N16.6	rs9462162-C	NR	3E-9		0.0213129	[0.014-0.028] unit increase	Affymetrix [321114] (imputed)	N
860	chr6	36149247	36149248	rs9462162	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6p21.31	NR	rs9462162-?	NR	4E-12				Affymetrix [~ 8270000] (imputed)	N
861	chr6	36186238	36186238	rs547108095	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Diastolic blood pressure (long-term average)	13,137 European ancestry individuals	2,451 European ancestry individuals	6p21.31	NR	rs547108095-CT	0.94	4E-7		1.0899	[0.67-1.51] mmHg decrease	Affymetrix, Illumina [NR] (imputed)	N
861	chr6	36198576	36198577	rs3748045	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	6p21.31		rs3748045-G	0.3695	1E-8		0.09062269	[0.057-0.124] mmHg increase	Affymetrix, Illumina [242866] (imputed)	N
861	chr6	36207597	36207598	rs9380559	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	6p21.31	PNPLA1	rs9380559-G	0.365719	8E-18		0.019424846	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
861	chr6	36207597	36207598	rs9380559	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	6p21.31	PNPLA1	rs9380559-G	0.365766	3E-13		0.016700746	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
861	chr6	36207597	36207598	rs9380559	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	6p21.31	PNPLA1	rs9380559-G	0.365724	7E-12		0.01564375	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
861	chr6	36207597	36207598	rs9380559	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	6p21.31		rs9380559-?	NR	5E-19				NR [~ 8900000] (imputed)	N
861	chr6	36217159	36217160	rs4713940	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6p21.31		rs4713940-?	NR	5E-41				NR [~ 8900000] (imputed)	N
861	chr6	36221311	36221312	rs35517925	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MAPK13	5,364 Icelandic ancestry individuals	NA	6p21.31		rs35517925-A	0.2346	3E-14		0.17173	[0.13-0.22] unit increase	Illumina [7506463] (imputed)	N
861	chr6	36222687	36222688	rs7766116	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p21.31	NR	rs7766116-T	0.467517	8E-16				Affymetrix, Illumina [24332387] (imputed)	N
861	chr6	36224314	36224315	rs34262487	33568662	Dashti HS	2021-02-10	Nat Commun	Genetic determinants of daytime napping and effects on cardiometabolic health.	Daytime nap	452,633 European ancestry individuals	541,333 European ancestry individuals	6p21.31	PNPLA1	rs34262487-C		1E-7		0.0088	[0.0055-0.0121] unit increase	Affymetrix [13304133] (imputed)	N
862	chr6	36321182	36321183	rs75436172	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.31	Intergenic	rs75436172-T	NR	6E-6	(men)	0.106854	[0.061-0.153] unit decrease	Illumina [13520550] (imputed)	N
862	chr6	36344979	36344980	rs9470264	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Platelet count	8,850 African American individuals, 18,949 Hispanic/Latino individuals, 541 Asian ancestry individuals, 603 Native American ancestry individuals, 385 individuals	NA	6p21.31	NR	rs9470264-?	NR	2E-11		4.952153	[3.51-6.4] unit increase	Illumina [30743395] (imputed)	N
862	chr6	36348688	36348689	rs1076928	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	6p21.31	ETV7	rs1076928-T	NR	3E-19		1.1299435	NR	Affymetrix, Illumina [8278136] (imputed)	N
862	chr6	36349665	36349666	rs3778028	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	6p21.31	NR	rs3778028-A	0.009938	2E-34		0.116309	[0.098-0.135] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
862	chr6	36349665	36349666	rs3778028	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	6p21.31	ETV7	rs3778028-A	0.0095	2E-9		0.1172421	[0.079-0.156] unit increase	Affymetrix [~ 2500000] (imputed)	N
862	chr6	36349665	36349666	rs3778028	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	6p21.31	ETV7	rs3778028-A	0.0095	1E-28		0.2160177	[0.18-0.25] unit decrease	Affymetrix [~ 2500000] (imputed)	N
862	chr6	36350857	36350858	rs916287	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls	NA	6p21.31	ETV7	rs916287-?	NR	6E-6		1.1627907	[1.09-1.25]	Illumina [at least 5000000] (imputed)	N
862	chr6	36353933	36353934	rs9368924	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	White blood cell count	107,964 Japanese ancestry individuals	NA	6p21.31	ETV7	rs9368924-?	NR	6E-10		0.02721	[0.019-0.036] unit decrease novel	Illumina [6108953] (imputed)	N
862	chr6	36355653	36355654	rs2234067	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	6p21.31	ETV7	rs2234067-A	NR	2E-9		0.137255	[0.093-0.182] unit decrease	Illumina [8380626] (imputed)	N
862	chr6	36355653	36355654	rs2234067	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	6p21.31	ETV7	rs2234067-A	0.13	4E-8	(EA)	0.13078	[0.084-0.177] unit decrease	Illumina [8380626] (imputed)	N
862	chr6	36358288	36358289	rs1998266	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6p21.31	NR	rs1998266-C	0.8611	2E-8		1.0500892	[1.03-1.07]	Affymetrix [15688218] (imputed)	N
862	chr6	36358288	36358289	rs1998266	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	6p21.31		rs1998266-?	NR	2E-8				NR [~ 8900000] (imputed)	N
862	chr6	36361062	36361063	rs76676074	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Mean platelet volume	21,347 Hispanic or Latin American individuals	NA	6p21.31		rs76676074-T	0.8612	2E-10		0.1694	[0.12-0.22] unit increase	Affymetrix, Illumina [NR] (imputed)	N
862	chr6	36361062	36361063	rs76676074	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Mean platelet volume	16,201 African American or Afro-Caribbean individuals	NA	6p21.31		rs76676074-T	0.895	9E-7		0.145	[0.087-0.203] unit increase	Affymetrix, Illumina [NR] (imputed)	N
862	chr6	36375303	36375304	rs941816	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	6p21.31	PXT1	rs941816-G	0.2	4E-10		1.11		Illumina [161311]	N
862	chr6	36397491	36397492	rs515186	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	6p21.31	PXT1	rs515186-G	0.3009	6E-21		0.03715279	[0.029-0.045] unit decrease	Affymetrix [~ 2500000] (imputed)	N
862	chr6	36398145	36398146	rs629297	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	6p21.31		rs629297-?	NR	5E-8				Affymetrix [NR] (imputed)	N
862	chr6	36398835	36398836	rs186785205	34387878	Kim KY	2021-08-13	Hepatology	Genome-wide association of individual vulnerability with alcoholic liver disease: A Korean Genome and Epidemiology Study.	Alcohol-associated liver disease in non drinkers	782 Korean ancestry cases, 18,058 Korean ancestry controls	NA	6p21.31		rs186785205-?	NR	5E-7		2.0	[1.527-2.619]	Affymetrix [7975321] (imputed)	N
862	chr6	36426089	36426090	rs9470285	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	6p21.31	KCTD20	rs9470285-T	0.701086	2E-35		0.030822974	[0.026-0.036] unit increase	Affymetrix [93095623] (imputed)	N
862	chr6	36431498	36431499	rs77660021	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Platelet count	108,208 Japanese ancestry individuals	NA	6p21.31	KCTD20	rs77660021-?	NR	7E-35		0.07478	[0.063-0.087] unit increase novel	Illumina [6108953] (imputed)	N
863	chr6	36466786	36466787	rs4713978	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	145,648 East Asian ancestry individuals	NA	6p21.31	NR	rs4713978-C	0.85727	3E-39		0.069392	[0.059-0.08] SD units decrease	Affymetrix, Illumina [16710488] (imputed)	N
863	chr6	36469820	36469821	rs4236051	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.31		rs4236051-C	0.991	1E-14				Affymetrix [10369434] (imputed)	N
863	chr6	36470309	36470310	rs74625164	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	10,737 African American or Afro-Caribbean and African ancestry individuals	NA	6p21.31	NR	rs74625164-T	0.914945	5E-12		0.173693	[0.12-0.22] SD units increase	Affymetrix, Illumina [36042313] (imputed)	N
863	chr6	36493877	36493878	rs113553570	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Platelet count	27,236 European ancestry individuals	NA	6p21.31		rs113553570-A	0.834	3E-11		0.0822	[0.058-0.107] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
863	chr6	36493877	36493878	rs113553570	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Platelet count	16,201 African American or Afro-Caribbean individuals	NA	6p21.31		rs113553570-A	0.9089	9E-9		0.1103	[0.073-0.148] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
863	chr6	36493877	36493878	rs113553570	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Mean platelet volume	21,347 Hispanic or Latin American individuals	NA	6p21.31		rs113553570-A	0.8675	7E-10		0.1659	[0.11-0.22] unit increase	Affymetrix, Illumina [NR] (imputed)	N
863	chr6	36493877	36493878	rs113553570	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p21.31	NR	rs113553570-A	0.0377267	7E-77				Affymetrix, Illumina [24588908] (imputed)	N
863	chr6	36493877	36493878	rs113553570	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p21.31	NR	rs113553570-G	0.987835	2E-127				Affymetrix, Illumina [17210439] (imputed)	N
863	chr6	36493877	36493878	rs113553570	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	6p21.31	NR	rs113553570-G	0.990748	7E-109		0.222952	[0.2-0.24] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
863	chr6	36494084	36494085	rs141301223	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	6p21.31	STK38	rs141301223-A	0.004135	3E-12		0.14140195	[0.1-0.18] unit decrease	Affymetrix [93095623] (imputed)	N
863	chr6	36495777	36495778	rs145855729	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Mean platelet volume	16,201 African American or Afro-Caribbean individuals	NA	6p21.31		rs145855729-T	0.9223	2E-9		0.2047	[0.14-0.27] unit increase	Affymetrix, Illumina [NR] (imputed)	N
863	chr6	36495777	36495778	rs145855729	28521775	Manichaikul A	2017-05-18	Respir Res	Genome-wide association study of subclinical interstitial lung disease in MESA.	Subclinical trait of interstitial lung disease (basilar percentage of high attenuation areas on CT scan)	2,434 European ancestry individuals, 2,470 African American individuals, 2,065 Hispanic individuals, 702 Chinese ancestry individuals	3,013 European ancestry individuals	6p21.31	STK38	rs145855729-T	0.084	4E-8	(AA)	0.126	[0.081-0.171] unit increase	Affymetrix [at least 897981] (imputed)	N
863	chr6	36507853	36507854	rs750077787	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean platelet volume	445,364 European ancestry individuals	NA	6p21.31		rs750077787-?	NR	3E-27		0.476645	[0.39-0.57] unit decrease	NR [9800000] (imputed)	N
863	chr6	36524593	36524594	rs116957783	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	6p21.31		rs116957783-G	0.009212	1E-12		0.08394218	[0.061-0.107] unit decrease	Affymetrix [93095623] (imputed)	N
863	chr6	36524593	36524594	rs116957783	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	6p21.31		rs116957783-G	0.009216	5E-24		0.1183957	[0.095-0.141] unit increase	Affymetrix [93095623] (imputed)	N
863	chr6	36524593	36524594	rs116957783	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	6p21.31		rs116957783-G	0.00921300000000003	3E-70		0.2106151	[0.19-0.23] unit decrease	Affymetrix [93095623] (imputed)	N
863	chr6	36524593	36524594	rs116957783	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	2,810 Hispanic or Latin American individuals	NA	6p21.31	NR	rs116957783-A	0.88127402	4E-12		0.2899	[0.21-0.37] SD units increase	Affymetrix, Illumina [24878602] (imputed)	N
863	chr6	36538394	36538395	rs7771547	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	6p21.31	intergenic	rs7771547-G	0.3027	2E-9		0.02341429	[0.016-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
863	chr6	36548127	36548128	rs77693176	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	6p21.31		rs77693176-?	NR	5E-8				Affymetrix [NR] (imputed)	N
863	chr6	36552333	36552334	rs181438735	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	6p21.31		rs181438735-A	0.034764	2E-12		0.04402653	[0.032-0.056] unit decrease	Affymetrix [93095623] (imputed)	N
863	chr6	36554239	36554240	rs72852338	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (multi-trait analysis)	90,939 European ancestry individuals	NA	6p21.31	STK38, SRSF3	rs72852338-A	0.78	8E-13		0.0075	NR unit decrease	Affymetrix, Illumina [8002429] (imputed)	N
863	chr6	36555803	36555803	rs144579321	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	6p21.31		rs144579321-AT	0.180661	2E-12		0.020350946	[0.015-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
863	chr6	36556729	36556730	rs9380582	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glaucoma	10,411 European ancestry cases, 474,568 European ancestry controls, 8,448 East Asian ancestry cases, 168,903 East Asian ancestry controls	NA	6p21.31		rs9380582-C	NR	9E-10		0.0707	[0.048-0.093] unit increase	Affymetrix, Illumina [25844939] (imputed)	N
863	chr6	36558963	36558964	rs9394363	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	9,179 European ancestry cases, 134,471 European ancestry controls, 1,983 East Asian ancestry cases, 13,719 East Asian ancestry controls, 127 Sub-Saharan African ancestry cases, 100 Sub-Saharan African ancestry controls	NA	6p21.31	SRSF3	rs9394363-T	NR	5E-7		0.917502	[0.88-0.95]	Illumina [NR] (imputed)	N
863	chr6	36558963	36558964	rs9394363	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	8,758 European ancestry cases, 108,815 European ancestry controls, 1,996 East Asian ancestry cases, 16,559  East Asian ancestry controls, 171 Sub-Saharan African ancestry cases, 94 Sub-Saharan African ancestry controls	NA	6p21.31	SRSF3	rs9394363-T	NR	3E-8		0.911558	[0.88-0.94]	Illumina [NR] (imputed)	N
863	chr6	36558963	36558964	rs9394363	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6p21.31	SRSF3	rs9394363-C	0.248682	7E-19		0.02234621	[0.017-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
863	chr6	36558963	36558964	rs9394363	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	6p21.31	SRSF3	rs9394363-C	0.24857	4E-15		0.020061512	[0.015-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
863	chr6	36558963	36558964	rs9394363	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	6p21.31	SRSF3	rs9394363-C	0.248794	6E-14		0.0177951	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
863	chr6	36558963	36558964	rs9394363	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	6p21.31		rs9394363-?	NR	3E-9				NR [~ 8900000] (imputed)	N
864	chr6	36570365	36570366	rs7344	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls	NA	6p21.2	SRSF3	rs7344-T	NR	8E-8		0.899245	[0.86-0.94]	Illumina [11610548] (imputed)	N
864	chr6	36570365	36570366	rs7344	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	23,963 European ancestry cases, 306,942 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	43,254 European ancestry cases, 1,471,118 European ancestry controls	6p21.2	SRSF3	rs7344-T	NR	2E-12		0.0599	unit decrease	Illumina [15409056] (imputed)	N
864	chr6	36585599	36585600	rs149121646	30070759	Olsson M	2018-08-02	J Thromb Haemost	Genome-wide analysis of genetic determinants of circulating factor VII activating protease (FSAP) activity.	Plasma factor VII activating protease levels	3,126 Swedish ancestry individuals	NA	6p21.2	Intergenic	rs149121646-?		2E-6		169.6	[100.22-238.98] unit decrease	Illumina [~ 10000000] (imputed)	N
864	chr6	36588139	36588140	rs12211825	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (adjusted for vertical disc diameter)	67,040 British ancestry individuals	NA	6p21.2	SRSF3	rs12211825-C	0.78	4E-12		0.00748	[0.0054-0.0096] unit decrease	Affymetrix [at least 8002429] (imputed)	N
864	chr6	36592986	36592988	rs67530707	29891935	Choquet H	2018-06-11	Nat Commun	A multiethnic genome-wide association study of primary open-angle glaucoma identifies novel risk loci.	Glaucoma (primary open-angle)	3,836 European ancestry cases, 48,065 European ancestry controls, 411 Hispanic cases, 4,778 Hispanic controls, 441 East Asian ancestry cases, 4,034 East Asian ancestry controls, 298 African American cases, 1,549 African American controls	6,687 European ancestry cases, 155,514 European ancestry controls, 204 South Asian ancestry cases, 4,916 South Asian ancestry controls, 272 African British cases, 4,831 African British controls, 22 East Asian ancestry cases, 873 East Asian ancestry controls, 144 mixed ancestry cases, 3,427 mixed ancestry controls	6p21.2	CDKN1A	rs67530707-T		4E-9		1.1627907	[1.1-1.22]	Affymetrix [at least 665500] (imputed)	N
864	chr6	36596647	36596648	rs73410251	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	6p21.2		rs73410251-G	0.281575	8E-13		0.017492486	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
864	chr6	36602026	36602027	rs747844459	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	6p21.2		rs747844459-T	9.12000000000024E-4	9E-31		0.42823735	[0.36-0.5] unit decrease	Affymetrix [93095623] (imputed)	N
864	chr6	36602026	36602027	rs747844459	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6p21.2		rs747844459-T	9.14999999999999E-4	3E-34		0.45496562	[0.38-0.53] unit increase	Affymetrix [93095623] (imputed)	N
864	chr6	36602026	36602027	rs747844459	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	6p21.2		rs747844459-T	9.19000000000003E-4	4E-40		0.49794036	[0.42-0.57] unit increase	Affymetrix [93095623] (imputed)	N
864	chr6	36602026	36602027	rs747844459	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	6p21.2		rs747844459-T	9.17999999999974E-4	2E-52		0.51617	[0.45-0.58] unit increase	Affymetrix [93095623] (imputed)	N
864	chr6	36602026	36602027	rs747844459	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	6p21.2		rs747844459-T	9.17999999999974E-4	5E-52		0.5479358	[0.48-0.62] unit increase	Affymetrix [93095623] (imputed)	N
864	chr6	36602026	36602027	rs747844459	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	6p21.2		rs747844459-T	9.2099999999995E-4	5E-13		0.2743433	[0.2-0.35] unit increase	Affymetrix [93095623] (imputed)	N
864	chr6	36602026	36602027	rs747844459	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	6p21.2	NR	rs747844459-C	0.999031	6E-33		0.394012	[0.33-0.46] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
864	chr6	36602026	36602027	rs747844459	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	6p21.2	NR	rs747844459-C	0.999027	9E-53		0.491501	[0.43-0.55] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
864	chr6	36602026	36602027	rs747844459	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	6p21.2	NR	rs747844459-C	0.999025	4E-53		0.498871	[0.44-0.56] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
864	chr6	36602026	36602027	rs747844459	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	6p21.2	intergenic	rs747844459-T	0.0015	2E-10		0.3144035	[0.22-0.41] unit decrease	Affymetrix [~ 2500000] (imputed)	N
864	chr6	36602026	36602027	rs747844459	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	6p21.2	intergenic	rs747844459-T	0.0015	3E-17		0.4125324	[0.32-0.51] unit increase	Affymetrix [~ 2500000] (imputed)	N
864	chr6	36602026	36602027	rs747844459	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	6p21.2	intergenic	rs747844459-T	0.0015	2E-18		0.4292975	[0.33-0.53] unit increase	Affymetrix [~ 2500000] (imputed)	N
864	chr6	36613811	36613812	rs6457931	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	6p21.2	MIR3925	rs6457931-?	NR	1E-9	(XL_HDL_L)	0.08344993	NR unit increase	Illumina [609262]	N
864	chr6	36613811	36613812	rs6457931	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	6p21.2	MIR3925	rs6457931-?	NR	2E-7	(XL_HDL_L)	0.07677901	NR unit increase	Illumina [609262]	N
864	chr6	36616366	36616368	rs34632254	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	6p21.2		rs34632254-A	NR	2E-8		0.0137	[0.009-0.0184] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
864	chr6	36616366	36616368	rs34632254	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	6p21.2		rs34632254-A	0.550837	4E-14		0.01698219	[0.013-0.021] unit increase	Affymetrix [93095623] (imputed)	N
864	chr6	36618820	36618821	rs1321313	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	QRS duration	3,274 African American individuals, 13,420 Hispanic/Latino individuals, 126 Asian ancestry individuals, 226 Native American ancestry individuals	NA	6p21.2	NR	rs1321313-?	NR	1E-12		0.8274283	[0.6-1.06] unit increase	Illumina [26566045] (imputed)	N
864	chr6	36618820	36618821	rs1321313	23463857	Ritchie MD	2013-03-05	Circulation	Genome- and phenome-wide analyses of cardiac conduction identifies markers of arrhythmia risk.	Electrocardiographic conduction measures	5,272 European ancestry indiviudals	40,407 European ancestry individuals	6p21.2	CDKN1A	rs1321313-C	0.742	5E-25	(QRS duration - CHARGE)	0.8129	[NR] msec decrease	Illumina [528508]	N
864	chr6	36620498	36620499	rs10947616	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Uterine fibroids	21,024 European ancestry cases, 237,694 European ancestry controls, 14,475 East Asian ancestry cases, 65,733 East Asian ancestry controls	NA	6p21.2		rs10947616-G	NR	6E-13		0.0695	[0.051-0.088] unit decrease	Affymetrix, Illumina [25795146] (imputed)	N
864	chr6	36622899	36622900	rs1321311	32527199	van Duijvenboden S	2020-06-11	Circ Genom Precis Med	Genetic Basis and Prognostic Value of Exercise QT Dynamics.	QT dynamics during exercise	28,449 European ancestry women, 24,412 European ancestry men	NA	6p21.2		rs1321311-C	0.764417	7E-11	(female)	0.0576133	[0.040-0.075] bpm increase	Affymetrix [9800000] (imputed)	N
864	chr6	36622899	36622900	rs1321311	32527199	van Duijvenboden S	2020-06-11	Circ Genom Precis Med	Genetic Basis and Prognostic Value of Exercise QT Dynamics.	QT dynamics during exercise	28,449 European ancestry women, 24,412 European ancestry men	NA	6p21.2		rs1321311-C	0.764	2E-13		0.045	[0.033-0.057] bpm increase	Affymetrix [9800000] (imputed)	N
864	chr6	36622899	36622900	rs1321311	31826910	Lu Y	2019-12-11	Cancer Epidemiol Biomarkers Prev	Identification of novel loci and new risk variant in known loci for colorectal cancer risk in East Asians.	Colorectal cancer	23,572 East Asian ancestry cases, 48,700 East Asian ancestry controls	58,131 European ancestry cases, 67,347 European ancestry controls	6p21.2	CDKN1A	rs1321311-A	NR	2E-6	(East Asian)	1.09	[1.05-1.13]	Affymetrix, Illumina [up to 47000000] (imputed)	N
864	chr6	36622899	36622900	rs1321311	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	QRS duration	3,274 African American individuals, 13,420 Hispanic/Latino individuals, 126 Asian ancestry individuals, 226 Native American ancestry individuals	NA	6p21.2	NR	rs1321311-?	NR	4E-8		0.584833	[0.38-0.79] unit increase	Illumina [26566045] (imputed)	N
864	chr6	36622899	36622900	rs1321311	30529582	Lu Y	2018-12-06	Gastroenterology	Large-scale Genome-wide Association Study of East Asians Identifies Loci Associated With Risk for Colorectal Cancer.	Colorectal cancer	22,775 East Asian ancestry cases, 47,731 East Asian ancestry controls	NA	6p21.2	CDKN1A	rs1321311-A	0.15	1E-6		1.09	[1.05-1.13]	Affymetrix, Illumina [up to 10700000] (imputed)	N
864	chr6	36622899	36622900	rs1321311	27659466	van der Harst P	2016-09-27	J Am Coll Cardiol	52 Genetic Loci Influencing Myocardial Mass.	QRS duration	59,565 European ancestry individuals, 690 Orcadian (founder/genetic isolate) individuals	13,263 European ancestry individuals, 3,603 African American individuals, 4,619 Indian ancestry individuals	6p21.2	CDKN1A	rs1321311-?	NR	1E-37	(EA)	0.84	[0.7-0.98] unit increase	Affymetrix, Illumina, Perlegen [at least 2766983] (imputed)	N
864	chr6	36622899	36622900	rs1321311	27659466	van der Harst P	2016-09-27	J Am Coll Cardiol	52 Genetic Loci Influencing Myocardial Mass.	QRS complex (Cornell)	up to 58,172 European ancestry individuals, up to 690 Orcadian (founder/genetic isolate) individuals	13,263 European ancestry individuals, 3,603 African American individuals, 4,619 Indian ancestry individuals	6p21.2	CDKN1A	rs1321311-?	NR	1E-9	(EA)			Affymetrix, Illumina, Perlegen [2766983] (imputed)	N
864	chr6	36622899	36622900	rs1321311	22634755	Dunlop MG	2012-05-27	Nat Genet	Common variation near CDKN1A, POLD3 and SHROOM2 influences colorectal cancer risk.	Colorectal cancer	8,323 European ancestry cases, 9,457 European ancestry controls	19,513 European ancestry cases, 17,657 European ancestry controls, 1,583 Japanese ancestry cases, 1,898 Japanese ancestry controls	6p21.2	CDKN1A	rs1321311-?	NR	1E-10		1.1	[1.07-1.13]	Illumina [NR] (imputed)	N
864	chr6	36622899	36622900	rs1321311	20062063	Holm H	2010-01-10	Nat Genet	Several common variants modulate heart rate, PR interval and QRS duration.	Electrocardiographic traits	Up to 12,670 European ancestry individuals	Up to 10,352 European ancestry individuals	6p21.2	CDKN1A	rs1321311-T	0.21	3E-10	(QRS duration)	6.52	[4.50-8.55] % s.d. increase	Illumina [306060]	N
864	chr6	36623123	36623124	rs1321310	31089142	Law PJ	2019-05-14	Nat Commun	Association analyses identify 31 new risk loci for colorectal cancer susceptibility.	Colorectal cancer	31,197 European ancestry cases, 61,770 European ancestry controls	NA	6p21.2	NR	rs1321310-C	NR	6E-11		1.09	[1.06-1.11]	Affymetrix, Illumina [> 10000000] (imputed)	N
864	chr6	36623378	36623379	rs9470361	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	QRS duration	3,274 African American individuals, 13,420 Hispanic/Latino individuals, 126 Asian ancestry individuals, 226 Native American ancestry individuals	NA	6p21.2	NR	rs9470361-?	NR	4E-9		0.6379329	[0.43-0.85] unit increase	Illumina [26566045] (imputed)	N
864	chr6	36623378	36623379	rs9470361	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	6p21.2	CDKN1A	rs9470361-A	0.2488	9E-8		1.06	[1.03-1.08]	Affymetrix, Illumina [16900397] (imputed)	N
864	chr6	36623378	36623379	rs9470361	30012220	Prins BP	2018-07-17	Genome Biol	Exome-chip meta-analysis identifies novel loci associated with cardiac conduction, including ADAMTS6.	QRS duration	up to 77,898 European ancestry individuals, up to 7,695 African American individuals	up to 111,874 European ancestry individuals	6p21.2	intergenic	rs9470361-A	0.233863	2E-89		0.764631	[0.69-0.84] ms increase	Illumina [162199]	N
864	chr6	36623378	36623379	rs9470361	30012220	Prins BP	2018-07-17	Genome Biol	Exome-chip meta-analysis identifies novel loci associated with cardiac conduction, including ADAMTS6.	QRS duration	77,898 European ancestry individuals	NA	6p21.2	intergenic	rs9470361-A	0.242059272164915	4E-63		0.88405234	[0.78-0.99] ms increase	Illumina [213295]	N
864	chr6	36623378	36623379	rs9470361	28394258	Wild PS	2017-04-10	J Clin Invest	Large-scale genome-wide analysis identifies genetic variants associated with cardiac structure and function.	Left ventricular fractional shortening	30,201 European ancestry individuals	14,002 European ancestry individuals	6p21.2	CDKN1A	rs9470361-A	0.25	3E-6		0.169	[0.098-0.24] % increase	Affymetrix, Illumina [at least 283291] (imputed)	N
864	chr6	36623378	36623379	rs9470361	27659466	van der Harst P	2016-09-27	J Am Coll Cardiol	52 Genetic Loci Influencing Myocardial Mass.	QRS duration	59,565 European ancestry individuals, 690 Orcadian (founder/genetic isolate) individuals	13,263 European ancestry individuals, 3,603 African American individuals, 4,619 Indian ancestry individuals	6p21.2	NR	rs9470361-?	NR	2E-37	(EA)			Affymetrix, Illumina, Perlegen [at least 2766983] (imputed)	N
864	chr6	36623378	36623379	rs9470361	27659466	van der Harst P	2016-09-27	J Am Coll Cardiol	52 Genetic Loci Influencing Myocardial Mass.	QRS complex (Cornell)	up to 58,172 European ancestry individuals, up to 690 Orcadian (founder/genetic isolate) individuals	13,263 European ancestry individuals, 3,603 African American individuals, 4,619 Indian ancestry individuals	6p21.2	NR	rs9470361-?	NR	2E-9	(EA)			Affymetrix, Illumina, Perlegen [2766983] (imputed)	N
864	chr6	36623378	36623379	rs9470361	21076409	Sotoodehnia N	2010-11-14	Nat Genet	Common variants in 22 loci are associated with QRS duration and cardiac ventricular conduction.	QRS duration	39,717 European ancestry individuals, 690 Orcadian individuals	7,170 European ancestry individuals	6p21.2	CDKN1A	rs9470361-A	0.25	3E-27		0.87	[0.71-1.03] ms increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
864	chr6	36625561	36625562	rs9470366	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	QRS duration	3,274 African American individuals, 13,420 Hispanic/Latino individuals, 126 Asian ancestry individuals, 226 Native American ancestry individuals	NA	6p21.2	NR	rs9470366-?	NR	4E-9		0.6550191	[0.44-0.87] unit increase	Illumina [26566045] (imputed)	N
864	chr6	36625561	36625562	rs9470366	25035420	Hong KW	2014-07-17	Hum Mol Genet	Identification of three novel genetic variations associated with electrocardiographic traits (QRS duration and PR interval) in East Asians.	QRS duration	6,085 Korean ancestry individuals	7,295 Japanese ancestry individuals	6p21.2	CDKN1A	rs9470366-T	0.15	4E-7		1.16	[0.71-1.61] unit increase	Affymetrix [2100000] (imputed)	N
864	chr6	36627052	36627053	rs7756236	27577874	Evans DS	2016-08-29	Hum Mol Genet	Fine-mapping, novel loci identification, and SNP association transferability in a genome-wide association study of QRS duration in African Americans.	QRS duration	up to 13,031 African American individuals, 40,407 European ancestry individuals	NA	6p21.2	CDKN1A	rs7756236-A	0.74	2E-26	(European)	0.83	[NR] millisecond decrease	Affymetrix, Illumina [2955816] (imputed)	N
864	chr6	36627052	36627053	rs7756236	27577874	Evans DS	2016-08-29	Hum Mol Genet	Fine-mapping, novel loci identification, and SNP association transferability in a genome-wide association study of QRS duration in African Americans.	QRS duration	up to 13,031 African American individuals, 40,407 European ancestry individuals	NA	6p21.2	CDKN1A	rs7756236-A		6E-29		0.75	[0.61-0.89] millisecond decrease	Affymetrix, Illumina [2955816] (imputed)	N
864	chr6	36628952	36628953	rs9462210	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Left ventricular mass to end-diastolic volume ratio	19,260 European ancestry individuals	NA	6p21.2	CDKN1A	rs9462210-G	0.7693	3E-7		0.0046	[0.0028-0.0064] unit decrease	Affymetrix [~ 9500000] (imputed)	N
864	chr6	36628952	36628953	rs9462210	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Left ventricular global radial strain	19,260 European ancestry individuals	NA	6p21.2	CDKN1A	rs9462210-G	0.7693	5E-6		0.4253	[0.24-0.61] unit decrease	Affymetrix [~ 9500000] (imputed)	N
864	chr6	36628952	36628953	rs9462210	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Left ventricular global circumferential strain	19,260 European ancestry individuals	NA	6p21.2	CDKN1A	rs9462210-G	0.7693	8E-10		0.2272	[0.15-0.3] unit increase	Affymetrix [~ 9500000] (imputed)	N
864	chr6	36628952	36628953	rs9462210	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Left ventricle wall thickness	19,260 European ancestry individuals	NA	6p21.2	CDKN1A	rs9462210-G	0.7693	1E-6		0.0286	[0.017-0.04] unit decrease	Affymetrix [~ 9500000] (imputed)	N
864	chr6	36632687	36632688	rs13196885	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	6p21.2		rs13196885-T	0.522	1E-15		0.12446456	[0.094-0.155] mmHg increase	Affymetrix, Illumina [242866] (imputed)	N
864	chr6	36633068	36633069	rs4713999	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic heart failure	14,262 European ancestry cases, 471,898 European ancestry controls, 10,540 East Asian ancestry cases, 168,186 East Asian ancestry controls	NA	6p21.2		rs4713999-G	NR	1E-12		0.0755	[0.055-0.096] unit increase	Affymetrix, Illumina [25844553] (imputed)	N
864	chr6	36633068	36633069	rs4713999	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Dilated cardiomyopathy (MTAG)	5,521 cases, 397,323 controls	NA	6p21.2	CDKN1A	rs4713999-G	0.6683	7E-14		1.1100773	1.08-1.14	Affymetrix, Illumina [up to 7736182] (imputed)	N
864	chr6	36634155	36634156	rs6930083	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	6p21.2	PANDAR	rs6930083-A	0.3436	5E-7		0.029	[0.018-0.04] unit decrease	NR [8041861] (imputed)	N
864	chr6	36636079	36636080	rs66761782	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Hypertrophic cardiomyopathy (MTAG)	1,733 European ancestry cases, 6,628 European ancestry controls	NA	6p21.2	CDKN1A	rs66761782-C	0.26	2E-19		1.2883985	1.18-1.41	Illumina [6530233] (imputed)	N
864	chr6	36636079	36636080	rs66761782	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Hypertrophic cardiomyopathy	1,733 European ancestry cases, 6,628 European ancestry controls	2,694 European ancestry cases, 47,486 European ancestry controls	6p21.2	CDKN1A	rs66761782-C	0.26	3E-15		1.2461591	1.18-1.32	Illumina [6530233] (imputed)	N
864	chr6	36638174	36638175	rs4714001	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	6p21.2	CDKN1A	rs4714001-G	0.362947	4E-9		0.0121275	[0.0081-0.0162] unit decrease	Affymetrix [NR] (imputed)	N
864	chr6	36638174	36638175	rs4714001	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	6p21.2	NR	rs4714001-G	0.360395	3E-8		0.00612248	[0.0038-0.0085] unit increase	Affymetrix [16582621] (imputed)	N
864	chr6	36638174	36638175	rs4714001	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	6p21.2	NR	rs4714001-G	0.360395	3E-6		0.00539248	[0.0029-0.0079] unit increase	Affymetrix [16582614] (imputed)	N
864	chr6	36638635	36638636	rs1321309	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p21.2	Y_RNA, LAP3P2	rs1321309-A	0.503984	3E-12		0.01528141	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
864	chr6	36638635	36638636	rs1321309	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p21.2	NR	rs1321309-A	0.454748	4E-18				Affymetrix, Illumina [23114412] (imputed)	N
864	chr6	36638635	36638636	rs1321309	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	6p21.2	NR	rs1321309-A	0.500588	9E-20		0.017505	[0.014-0.021] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
864	chr6	36638635	36638636	rs1321309	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	6p21.2	CDKN1A, PANDAR	rs1321309-A	0.4907	3E-8		0.028	[0.018-0.038] unit increase	Affymetrix [at least 7947838] (imputed)	N
864	chr6	36638690	36638691	rs1321308	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p21.2	NR	rs1321308-C	0.432065	1E-18				Affymetrix, Illumina [24649327] (imputed)	N
864	chr6	36638690	36638691	rs1321308	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	6p21.2	NR	rs1321308-C	0.499611	5E-19		0.016476	[0.013-0.02] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
864	chr6	36640584	36640585	rs147802096	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	6p21.2	CDKN1A, PANDAR	rs147802096-A	0.924	1E-6		0.057	[0.033-0.081] unit decrease	Affymetrix [7947838] (imputed)	N
864	chr6	36644497	36644498	rs3829964	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p21.2	NR	rs3829964-C	0.4864	9E-8	(EA)	0.0331	[0.021-0.045] unit increase	Illumina [~ 11800000] (imputed)	N
864	chr6	36644755	36644756	rs36228198	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.2	NR	rs36228198-A	0.0122	8E-9	(UMPS)	0.006039	NR unit decrease	Illumina [1671387] (imputed)	N
864	chr6	36644755	36644756	rs36228198	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.2	NR	rs36228198-A	0.0122	8E-9	(PSMD12)	0.02942	NR unit decrease	Illumina [1671387] (imputed)	N
864	chr6	36644755	36644756	rs36228198	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.2	NR	rs36228198-A	0.0122	6E-9	(ASMTL)	0.03768	NR unit decrease	Illumina [1671387] (imputed)	N
864	chr6	36644755	36644756	rs36228198	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.2	NR	rs36228198-A	0.0122	6E-10	(HBD)	5.124	NR unit increase	Illumina [1671387] (imputed)	N
864	chr6	36644755	36644756	rs36228198	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.2	NR	rs36228198-A	0.0122	5E-9	(MTHFS)	0.05396	NR unit decrease	Illumina [1671387] (imputed)	N
864	chr6	36644755	36644756	rs36228198	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.2	NR	rs36228198-A	0.0122	4E-11	(PSMD3)	0.05469	NR unit decrease	Illumina [1671387] (imputed)	N
864	chr6	36644755	36644756	rs36228198	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.2	NR	rs36228198-A	0.0122	2E-9	(PSMD1)	0.0795	NR unit decrease	Illumina [1671387] (imputed)	N
864	chr6	36644755	36644756	rs36228198	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.2	NR	rs36228198-A	0.0122	2E-8	(PFKL)	0.1918	NR unit decrease	Illumina [1671387] (imputed)	N
864	chr6	36644755	36644756	rs36228198	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.2	NR	rs36228198-A	0.0122	1E-9	(PSMD14)	0.09014	NR unit decrease	Illumina [1671387] (imputed)	N
864	chr6	36644755	36644756	rs36228198	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.2	NR	rs36228198-A	0.0122	1E-8	(SAR1B)	0.1717	NR unit decrease	Illumina [1671387] (imputed)	N
864	chr6	36644755	36644756	rs36228198	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.2	NR	rs36228198-A	0.0122	1E-8	(SAR1A)	0.04899	NR unit decrease	Illumina [1671387] (imputed)	N
864	chr6	36645587	36645588	rs762624	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	6p21.2	CDKN1A	rs762624-A	0.73	7E-11	(EA)	1.06	[1.04-1.08]	Affymetrix, Illumina [up to 12149979] (imputed)	N
864	chr6	36645587	36645588	rs762624	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Ischemic stroke	34,217 European ancestry cases, 406,111 European ancestry controls, 17,369 East Asian ancestry cases, 28,195 East Asian ancestry controls, 2,437 South Asian ancestry cases, 6,707 South Asian ancestry controls, 5,541 African American cases, 15,146 African American controls, 222 Asian ancestry cases, 333 Asian ancestry controls, 555 Latin American cases, 692 Latin American controls	NA	6p21.2	CDKN1A	rs762624-A	0.63	2E-7		1.05	[1.03-1.07]	NR [~ 8000000] (imputed)	N
864	chr6	36645695	36645696	rs2395655	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6p21.2		rs2395655-?	NR	2E-8				NR [~ 8900000] (imputed)	N
864	chr6	36645695	36645696	rs2395655	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	6p21.2	intergenic	rs2395655-A	0.5474	7E-12		0.0147	[0.011-0.019] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
864	chr6	36645967	36645968	rs730506	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atrial fibrillation/atrial flutter	29,212 European ancestry cases, 400,539 European ancestry controls, 4,150 East Asian ancestry cases, 155,540 East Asian ancestry controls	NA	6p21.2		rs730506-C	NR	1E-8		0.0697	[0.046-0.094] unit decrease	Affymetrix, Illumina [25830072] (imputed)	N
864	chr6	36645967	36645968	rs730506	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p21.2	CDKN1A	rs730506-G	0.79532	9E-10	(6 ms)	0.0424131	[0.029-0.056] unit increase	Affymetrix [10000000] (imputed)	N
864	chr6	36645967	36645968	rs730506	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p21.2	CDKN1A	rs730506-G	0.79532	8E-24	(-2 ms)	0.068998	[0.055-0.083] unit increase	Affymetrix [10000000] (imputed)	N
864	chr6	36645967	36645968	rs730506	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p21.2	CDKN1A	rs730506-G	0.79532	8E-12	(150 ms)	0.045632	[0.032-0.059] unit decrease	Affymetrix [10000000] (imputed)	N
864	chr6	36645967	36645968	rs730506	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p21.2	CDKN1A	rs730506-G	0.79532	7E-17	(4 ms)	0.0573215	[0.044-0.071] unit increase	Affymetrix [10000000] (imputed)	N
864	chr6	36645967	36645968	rs730506	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p21.2	CDKN1A	rs730506-G	0.79532	6E-12	(146 ms)	0.0457277	[0.032-0.059] unit decrease	Affymetrix [10000000] (imputed)	N
864	chr6	36645967	36645968	rs730506	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p21.2	CDKN1A	rs730506-G	0.79532	4E-8	(160 ms)	0.0373677	[0.024-0.051] unit decrease	Affymetrix [10000000] (imputed)	N
864	chr6	36645967	36645968	rs730506	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p21.2	CDKN1A	rs730506-G	0.79532	3E-9	(132 ms)	0.0409162	[0.028-0.054] unit decrease	Affymetrix [10000000] (imputed)	N
864	chr6	36645967	36645968	rs730506	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p21.2	CDKN1A	rs730506-G	0.79532	3E-21	(-4 ms)	0.0648311	[0.051-0.078] unit increase	Affymetrix [10000000] (imputed)	N
864	chr6	36645967	36645968	rs730506	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p21.2	CDKN1A	rs730506-G	0.79532	3E-10	(154 ms)	0.0424012	[0.029-0.056] unit decrease	Affymetrix [10000000] (imputed)	N
864	chr6	36645967	36645968	rs730506	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p21.2	CDKN1A	rs730506-G	0.79532	2E-8	(138 ms)	0.0377934	[0.024-0.051] unit decrease	Affymetrix [10000000] (imputed)	N
864	chr6	36645967	36645968	rs730506	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p21.2	CDKN1A	rs730506-G	0.79532	2E-24	(0 ms)	0.0699931	[0.056-0.084] unit increase	Affymetrix [10000000] (imputed)	N
864	chr6	36645967	36645968	rs730506	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p21.2	CDKN1A	rs730506-G	0.79532	2E-22	(2 ms)	0.0666964	[0.053-0.08] unit increase	Affymetrix [10000000] (imputed)	N
864	chr6	36645967	36645968	rs730506	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p21.2	CDKN1A	rs730506-G	0.79532	2E-17	(-6 ms)	0.0582841	[0.045-0.072] unit increase	Affymetrix [10000000] (imputed)	N
864	chr6	36645967	36645968	rs730506	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p21.2	CDKN1A	rs730506-G	0.79532	2E-12	(148 ms)	0.0465777	[0.033-0.06] unit decrease	Affymetrix [10000000] (imputed)	N
864	chr6	36645967	36645968	rs730506	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p21.2	CDKN1A	rs730506-G	0.79532	1E-8	(-10 ms)	0.0390716	[0.026-0.053] unit increase	Affymetrix [10000000] (imputed)	N
864	chr6	36645967	36645968	rs730506	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p21.2	CDKN1A	rs730506-G	0.79532	1E-10	(152 ms)	0.0434022	[0.03-0.057] unit decrease	Affymetrix [10000000] (imputed)	N
864	chr6	36645967	36645968	rs730506	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	6p21.2	CDKN1A	rs730506-C	0.2	7E-15		0.62	[0.46-0.78] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
864	chr6	36645987	36645988	rs4151702	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta maximum area	31,908 individuals	NA	6p21.2		rs4151702-G	0.799754	3E-8		0.0494072	[0.031-0.068] decrease	Affymetrix [NR]	N
864	chr6	36646768	36646768	rs146170154	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	QRS duration	3,274 African American individuals, 13,420 Hispanic/Latino individuals, 126 Asian ancestry individuals, 226 Native American ancestry individuals	NA	6p21.2	CDKN1A	rs146170154-?	NR	5E-20		1.094994	[0.86-1.33] unit increase	Illumina [26566045] (imputed)	N
864	chr6	36646768	36646768	rs146170154	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	QRS duration	3,274 African American individuals, 13,420 Hispanic/Latino individuals, 126 Asian ancestry individuals, 226 Native American ancestry individuals	NA	6p21.2	CDKN1A	rs146170154-?	NR	1E-18	(Hispanic/Latino)	1.202343	[0.94-1.47] unit increase	Illumina [26566045] (imputed)	N
864	chr6	36646787	36646788	rs3176320	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Aspartate aminotransferase levels	386,570 British ancestry individuals, 10,617 Asian or Asian British individuals, 7,426 Black or Black British individuals, 2,321 Chinese ancestry individuals	NA	6p21.2	CDKN1A	rs3176320-?	NR	1E-10		0.0017	[0.0011-0.0023] unit decrease	Affymetrix [21347608] (imputed)	N
864	chr6	36646787	36646788	rs3176320	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Alanine aminotransferase levels	387,859 British ancestry individuals, 10,635 Asian or Asian British individuals, 7,468 Black or Black British individuals, 2,338 Chinese ancestry individuals	NA	6p21.2	CDKN1A	rs3176320-?	NR	4E-10		0.0027	[0.0017-0.0037] unit decrease	Affymetrix [21347608] (imputed)	N
864	chr6	36647288	36647289	rs3176326	33495597	Harper AR	2021-01-25	Nat Genet	Common genetic variants and modifiable risk factors underpin hypertrophic cardiomyopathy susceptibility and expressivity.	Hypertrophic cardiomyopathy (sarcomere negative)	170 African ancestry cases, 93 Hispanic/Latino cases, 52 East Asian ancestry cases, 1,444 European ancestry cases, 94 South Asian ancestry cases, 21 cases, 738 African ancestry controls, 78 Hispanic/Latino controls, 212 East Asian ancestry controls, 24,161 European ancestry controls, 1,132 South Asian ancestry controls, 1,023 controls	NA	6p21.2	CDKN1A	rs3176326-G	0.788407	1E-8		0.255251	[0.17-0.34] unit decrease	Affymetrix [8590397] (imputed)	N
864	chr6	36647288	36647289	rs3176326	33495597	Harper AR	2021-01-25	Nat Genet	Common genetic variants and modifiable risk factors underpin hypertrophic cardiomyopathy susceptibility and expressivity.	Hypertrophic cardiomyopathy	233 African ancestry cases, 122 Hispanic/Latino cases, 70 East Asian ancestry cases, 2,196 European ancestry cases, 138 South Asian ancestry cases, 21 cases, 1,331 African ancestry controls, 170 Hispanic/Latino controls, 333 East Asian ancestry controls, 42,902 European ancestry controls, 1,727 South Asian ancestry controls, 1,023 controls	1,643 European or unknown ancestry cases, 6,628 European or unknown ancestry controls	6p21.2	CDKN1A	rs3176326-G	0.791	2E-11		0.247	[0.17-0.32] unit decrease	Affymetrix [8590397] (imputed)	N
864	chr6	36647288	36647289	rs3176326	32602732	Baldassari AR	2020-06-30	Circ Genom Precis Med	Multi-ethnic Genome-wide Association Study of Decomposed Cardioelectric Phenotypes Illustrates Strategies to Identify and Characterize Evidence of Shared Genetic Effects for Complex Traits.	Electrocardiographic traits (multivariate)	17,873 European ancestry individuals, 12,749 Hispanic individuals, 5,408 African American individuals, 315 Chinese-American individuals	NA	6p21.2	CDKN1A	rs3176326-?	NR	1E-11				Affymetrix, Illumina [22000000] (imputed)	N
864	chr6	36647288	36647289	rs3176326	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	6p21.2	CDKN1A	rs3176326-A	0.2008	1E-12		0.5993	[0.43-0.76] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
864	chr6	36647288	36647289	rs3176326	31251759	Swenson BR	2019-06-28	PLoS One	GWAS of QRS duration identifies new loci specific to Hispanic/Latino populations.	QRS duration	15,124 Hispanic or Latin American individuals	NA	6p21.2	CDKN1A	rs3176326-A	0.17	2E-19		1.15	[0.9-1.4] ms increase	Affymetrix, Illumina [~ 21000000] (imputed)	N
864	chr6	36647288	36647289	rs3176326	30679814	van Setten J	2019-01-24	Eur J Hum Genet	Genome-wide association meta-analysis of 30,000 samples identifies seven novel loci for quantitative ECG traits.	QRS duration	2,177 Erasmus Rucphen Family (founder/genetic isolate) individuals, 23,332 European ancestry individuals	391 Carlantino (founder/genetic isolate) individuals, 981 Friuli Venezia Giulia (founder/genetic isolate) individuals, 30,760 European ancestry individuals, 2,048 African American individuals	6p21.2	CDKN1A	rs3176326-A	0.202	4E-25		1.177	[0.95-1.4] unit increase	Affymetrix, Illumina [at least 19000000] (imputed)	N
864	chr6	36647288	36647289	rs3176326	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	6p21.2	CDKN1A, PANDAR, PI16	rs3176326-G	0.802	1E-13		1.06	[1.05-1.08]	Illumina [34740186] (imputed)	N
864	chr6	36647288	36647289	rs3176326	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	6p21.2	CDKN1A	rs3176326-G	0.8	8E-11		1.06	[1.04-1.08]	Affymetrix, Illumina [up to 12149979] (imputed)	N
864	chr6	36647679	36647680	rs4135240	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	6p21.2	CDKN1A	rs4135240-T	0.67	1E-10		6.44	z-score increase	Affymetrix [4314223] (imputed)	N
864	chr6	36647679	36647680	rs4135240	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	6p21.2	NR	rs4135240-C	0.33006899999999995	3E-15		0.00653342	[0.0048-0.0083] unit increase	Affymetrix [16582909] (imputed)	N
864	chr6	36647679	36647680	rs4135240	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	6p21.2	NR	rs4135240-C	0.33006899999999995	1E-9		0.00583471	[0.0039-0.0078] unit increase	Affymetrix [16582965] (imputed)	N
864	chr6	36647679	36647680	rs4135240	31919418	Shah S	2020-01-09	Nat Commun	Genome-wide association and Mendelian randomisation analysis provide insights into the pathogenesis of heart failure.	Heart failure	47,309 European ancestry cases, 930,014 European ancestry controls	NA	6p21.2	CDKN1A	rs4135240-T	0.66	7E-9		1.05	[1.03-1.07]	Affymetrix, Illumina [8246881] (imputed)	N
864	chr6	36648363	36648364	rs3176334	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	6p21.2		rs3176334-C	NR	2E-10		0.0133	[0.0092-0.0174] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
864	chr6	36648363	36648364	rs3176334	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	6p21.2	CDKN1A	rs3176334-T	0.68	1E-8		5.69	z-score increase	Affymetrix [4312306] (imputed)	N
864	chr6	36648815	36648816	rs3176336	32981348	Klarin D	2020-09-28	Circulation	Genetic Architecture of Abdominal Aortic Aneurysm in the Million Veteran Program.	Abdominal aortic aneurysm	7,642 European ancestry cases, 172,172 European ancestry controls	4,972 European ancestry cases, 99,858 European ancestry controls	6p21.2	CDKN1A	rs3176336-T	0.4028	1E-10		1.1	1.07-1.13	Affymetrix [18689289] (imputed)	N
864	chr6	36648815	36648816	rs3176336	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	6p21.2		rs3176336-?	NR	8E-13				NR [~ 8900000] (imputed)	N
864	chr6	36648815	36648816	rs3176336	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	6p21.2	CDKN1A	rs3176336-A	0.5666	4E-16		0.1609	[0.12-0.2] mmHg increase	Affymetrix [NR] (imputed)	N
864	chr6	36648815	36648816	rs3176336	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	6p21.2	CDKN1A	rs3176336-A	0.604	3E-18		0.1553	[0.12-0.19] unit increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
864	chr6	36649592	36649593	rs2376620	32239439	Barr PB	2020-04-01	Behav Genet	A Family-Based Genome Wide Association Study of Externalizing Behaviors.	Externalizing behaviour score	7,568 European ancestry individuals, 3,274 African ancestry individuals, 4,270 European and African ancestry individuals	NA	6p21.2	NR	rs2376620-?	NR	4E-6		4.592	NR z score decrease	Affymetrix, Illumina [up to 15537641] (imputed)	N
864	chr6	36653596	36653597	rs1059234	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	6p21.2		rs1059234-T	NR	6E-9		0.0161	[0.011-0.022] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
864	chr6	36658091	36658092	rs7761648	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	6p21.2		rs7761648-T	NR	2E-8		0.0154	[0.01-0.021] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
864	chr6	36684517	36684518	rs236490	32310165	Kim BH	2020-04-09	J Alzheimers Dis	Identification of Novel Genes Associated with Cortical Thickness in Alzheimer's Disease: Systems Biology Approach to Neuroimaging Endophenotype.	Cortical thickness	919 European ancestry individuals	NA	6p21.2	RAB44	rs236490-T	0.201	3E-7		0.035	NR unit increase	Illumina [3041429] (imputed)	N
864	chr6	36695222	36695223	rs12201069	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Lateral occipital cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	6p21.2	RAB44	rs12201069-?		3E-6				Illumina [4322238] (imputed)	N
865	chr6	36704292	36704293	rs56285849	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.2	NR	rs56285849-T	0.956	9E-8		1.35	[1.24-1.46]	Illumina [11270530] (imputed)	N
865	chr6	36715031	36715031	rs34868004	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.2	CPNE5	rs34868004-CA	0.225	4E-9		1.104	[1.07-1.14]	Illumina [11270530] (imputed)	N
865	chr6	36722934	36722935	rs569231401	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	6p21.2	CPNE5	rs569231401-T	3.79000000000018E-4	3E-10		0.37835044	[0.26-0.5] unit decrease	Affymetrix [93095623] (imputed)	N
865	chr6	36742021	36742022	rs111569780	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	6p21.2	CPNE5	rs111569780-T	0.00409899999999996	8E-10		0.1099745	[0.075-0.145] unit increase	Affymetrix [93095623] (imputed)	N
865	chr6	36763412	36763413	rs72856431	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p21.2	NR	rs72856431-T	0.0219	9E-7	(EA)	0.1135	[0.068-0.159] unit increase	Illumina [~ 11800000] (imputed)	N
865	chr6	36767066	36767067	rs9470398	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	6p21.2	NR	rs9470398-?	NR	7E-7	(AA)	5.947438	[3.62-8.27] unit increase	Affymetrix [at least 600000] (imputed)	N
865	chr6	36767066	36767067	rs9470398	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	6p21.2	NR	rs9470398-?	NR	2E-6		5.807	NR unit decrease	Affymetrix [at least 600000] (imputed)	N
865	chr6	36768359	36768360	rs75913810	29460428	Gelernter J	2018-02-20	Alcohol Clin Exp Res	Genomewide association study of alcohol dependence and related traits in a Thai population.	Alcohol consumption (max-drinks)	1,045 Thai ancestry individuals	NA	6p21.2	CPNE5	rs75913810-A	0.232	9E-7		0.3941	[0.24-0.55] unit decrease	Illumina [at least 4683137] (imputed)	N
865	chr6	36792056	36792057	rs236373	23583979	den Hoed M	2013-04-14	Nat Genet	Identification of heart rate-associated loci and their effects on cardiac conduction and rhythm disorders.	Heart rate	85,787 European ancestry individuals, 6,568 Indian Asian ancestry indiviudals	88,823 European ancestry individuals	6p21.2	CPNE5	rs236373-C	0.727	9E-7				Affymetrix, Illumina [2516789] (imputed)	N
865	chr6	36805766	36805767	rs10440825	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.2	PPIL1	rs10440825-G	0.96140625	1E-21	(PPIL1, 9884_8_3)	0.5951468	[0.47-0.72] unit increase	Illumina [> 1000000] (imputed)	N
865	chr6	36816010	36816011	rs536768361	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	6p21.2	PPIL1	rs536768361-T	0.9905	7E-6		0.632	[0.36-0.91] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
865	chr6	36817112	36817113	rs236352	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	6p21.2		rs236352-G	NR	4E-8		0.0104	[0.0067-0.0141] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
865	chr6	36817112	36817113	rs236352	29769521	Ramirez J	2018-05-16	Nat Commun	Thirty loci identified for heart rate response to exercise and recovery implicate autonomic nervous system.	Heart rate response to exercise	up to 35,455 European ancestry females, up to 31,802 European ancestry males	NA	6p21.2	PPIL1	rs236352-A	0.341	6E-10		0.395	[0.27-0.52] bpm increase	Affymetrix [~ 7800000] (imputed)	N
865	chr6	36817112	36817113	rs236352	28610988	Kerr KF	2017-06-10	Heart Rhythm	Genome-wide association study of heart rate and its variability in Hispanic/Latino cohorts.	Heart rate	13,184 Hispanic/Latino individuals	7,073 European ancestry individuals, 4,771 African American individuals	6p21.2	PPIL1	rs236352-G	0.67	9E-7	(Hispanic)	0.605	[0.36-0.85] beats/min increase	Affymetrix, Illumina [16967914] (imputed)	N
865	chr6	36820564	36820565	rs236349	29769521	Ramirez J	2018-05-16	Nat Commun	Thirty loci identified for heart rate response to exercise and recovery implicate autonomic nervous system.	Heart rate response to recovery post exercise	up to 35,455 European ancestry females, up to 31,802 European ancestry males	NA	6p21.2	PPIL1	rs236349-A	0.340623	5E-6		0.260041	[0.15-0.37] bpm increase	Affymetrix [~ 7800000] (imputed)	N
865	chr6	36820564	36820565	rs236349	28613276	Nolte IM	2017-06-14	Nat Commun	Genetic loci associated with heart rate variability and their effects on cardiac disease risk.	Heart rate variability traits (pvRSA/HF)	24,088 European ancestry individuals	9,377 European ancestry individuals, 404 Hispanic/Latino individuals, 1,901 African American individuals	6p21.2	PPIL1	rs236349-G	0.6445000000000001	5E-15		0.068785	[0.051-0.087] unit decrease (EA)	Affymetrix, Illumina, Perlegen [at least 2135543] (imputed)	N
865	chr6	36820564	36820565	rs236349	28613276	Nolte IM	2017-06-14	Nat Commun	Genetic loci associated with heart rate variability and their effects on cardiac disease risk.	Heart rate variability traits (pvRSA/HF)	24,088 European ancestry individuals	9,377 European ancestry individuals, 404 Hispanic/Latino individuals, 1,901 African American individuals	6p21.2	PPIL1	rs236349-G	0.6445000000000001	3E-15	(EA)	0.068785	[0.051-0.087] unit decrease	Affymetrix, Illumina, Perlegen [at least 2135543] (imputed)	N
865	chr6	36820564	36820565	rs236349	28613276	Nolte IM	2017-06-14	Nat Commun	Genetic loci associated with heart rate variability and their effects on cardiac disease risk.	Heart rate variability traits (SDNN)	27,850 European ancestry individuals	24,125 European ancestry individuals, 11,234 Hispanic/Latino individuals, 6,899 African American individuals	6p21.2	PPIL1	rs236349-G	0.651	4E-25	(EA)	0.033	[0.027-0.039] unit decrease	Affymetrix, Illumina, Perlegen [at least 2135543] (imputed)	N
865	chr6	36820564	36820565	rs236349	28613276	Nolte IM	2017-06-14	Nat Commun	Genetic loci associated with heart rate variability and their effects on cardiac disease risk.	Heart rate variability traits (SDNN)	27,850 European ancestry individuals	24,125 European ancestry individuals, 11,234 Hispanic/Latino individuals, 6,899 African American individuals	6p21.2	PPIL1	rs236349-G	0.651	2E-28		0.033	[0.027-0.039] unit decrease (EA)	Affymetrix, Illumina, Perlegen [at least 2135543] (imputed)	N
865	chr6	36820564	36820565	rs236349	28613276	Nolte IM	2017-06-14	Nat Commun	Genetic loci associated with heart rate variability and their effects on cardiac disease risk.	Heart rate variability traits (RMSSD)	26,523 European ancestry individuals	20,429 European ancestry individuals, 11,234 Hispanic/Latino individuals, 6,895 African American individuals	6p21.2	PPIL1	rs236349-G	0.654958	9E-17	(EA)	0.035488	[0.027-0.044] unit decrease	Affymetrix, Illumina, Perlegen [at least 2135543] (imputed)	N
865	chr6	36820564	36820565	rs236349	28613276	Nolte IM	2017-06-14	Nat Commun	Genetic loci associated with heart rate variability and their effects on cardiac disease risk.	Heart rate variability traits (RMSSD)	26,523 European ancestry individuals	20,429 European ancestry individuals, 11,234 Hispanic/Latino individuals, 6,895 African American individuals	6p21.2	PPIL1	rs236349-G	0.654958	6E-20		0.035488	[0.027-0.044] unit decrease (EA)	Affymetrix, Illumina, Perlegen [at least 2135543] (imputed)	N
865	chr6	36820564	36820565	rs236349	27798624	Eppinga RN	2016-10-31	Nat Genet	Identification of genomic loci associated with resting heart rate and shared genetic predictors with all-cause mortality.	Resting heart rate	127,919 European ancestry individuals, 2,478 Asian ancestry individuals, 1,734 Black individuals, 684 Mixed ancestry individuals, 1,436 individuals	130,795 European ancestry individuals	6p21.2	PPIL1	rs236349-G	0.34	1E-15		0.2812	[0.21-0.35] unit increase	Affymetrix [19941912] (imputed)	N
865	chr6	36824398	36824399	rs2071823	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	6p21.2	NR	rs2071823-?	NR	8E-6				Affymetrix [NR]	N
866	chr6	36832102	36832103	rs236346	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Help-seeking from a GP	113,262 British ancestry cases, 219,360 British ancestry controls	NA	6p21.2	NR	rs236346-T	0.905	1E-8		1.0526316	[1.03-1.07]	NR [5276842] (imputed)	N
866	chr6	36839597	36839598	rs12194408	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.2	PPIL1	rs12194408-G	0.03	2E-55	(Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1.9884.8.3)	1.11	[0.97-1.25] unit decrease	Affymetrix [10572788] (imputed)	N
866	chr6	36848048	36848049	rs4714020	30378284	Smajlagic D	2018-10-31	Brain Behav	Moderating effect of mode of delivery on the genetics of intelligence: Explorative genome-wide analyses in ALSPAC.	Performance intelligence quotient (cesarean section interaction)	519 European ancestry child cases, 1,902 European ancestry child controls	NA	6p21.2	NR	rs4714020-T	NR	7E-6		1.84	[1.04-2.64] unit increase	Illumina [2141747] (imputed)	N
866	chr6	36854692	36854693	rs9357229	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	6p21.2		rs9357229-?	NR	1E-7				NR [~ 8900000] (imputed)	N
866	chr6	36865931	36865932	rs144656078	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PPIL1	5,361 Icelandic ancestry individuals	NA	6p21.2		rs144656078-T	0.03969	3E-46		0.674946	[0.58-0.77] unit decrease	Illumina [7506463] (imputed)	N
866	chr6	36911273	36911274	rs72846863	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	6p21.2	NR	rs72846863-G	0.8557	5E-8		0.0335	[0.022-0.045] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
866	chr6	36912557	36912558	rs1543274	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or recurrent major depressive disorder x sex interaction (3df)	31,567 European ancestry schizophrenia cases,19,924 European ancestry bipolar disorder cases, 5,314 European ancestry recurrent major depressive disorder cases, 78,190 European ancestry controls	NA	6p21.2	NR	rs1543274-G	NR	4E-6				NR [NR] (imputed)	N
866	chr6	36912557	36912558	rs1543274	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or major depressive disorder x sex interaction (3df)	31,567 European ancestry schizophrenia cases,19,924 European ancestry  bipolar disorder cases, 15,970 European ancestry major depressive disorder cases, 93,025 European ancestry controls	NA	6p21.2	C6orf89, PI16	rs1543274-G	NR	4E-6			[NR]	NR [NR] (imputed)	N
866	chr6	36912557	36912558	rs1543274	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia x sex interaction	31,567 European ancestry cases, 37,494 European ancestry controls	NA	6p21.2	NR	rs1543274-C	0.4843	7E-6		0.1835	[0.1-0.26] unit decrease	NR [NR] (imputed)	N
866	chr6	36922683	36922684	rs1405069	20237162	Bozaoglu K	2010-03-17	J Clin Endocrinol Metab	Chemerin, a novel adipokine in the regulation of angiogenesis.	Chemerin levels	858 Mexican American family members and individuals	NA	6p21.2	PI16	rs1405069-?	NR	6E-6				Illumina [542944]	N
866	chr6	36924515	36924516	rs10947652	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia x sex interaction	31,567 European ancestry cases, 37,494 European ancestry controls, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	NA	6p21.2	PI16	rs10947652-T	0.6413	3E-6		0.1314	[0.077-0.186] unit decrease	NR [NR] (imputed)	N
866	chr6	36924515	36924516	rs10947652	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia x sex interaction	31,567 European ancestry cases, 37,494 European ancestry controls	NA	6p21.2	PI16	rs10947652-T	0.6364	5E-6		0.1294	[0.074-0.185] unit decrease	NR [NR] (imputed)	N
866	chr6	36925975	36925976	rs62406524	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	6p21.2	PI16	rs62406524-C	0.0982043744541177	3E-6		0.0043753	[NR] unit decrease	Affymetrix [> 30000000] (imputed)	N
867	chr6	36963371	36963372	rs708010	30263053	Deng X	2018-09-17	BMC Proc	Genome-wide association study for multiple phenotype analysis.	HDL cholesterol and triglyceride levels (pleiotropy)	821 individuals	NA	6p21.2	NA	rs708010-?	NR	1E-6				Affymetrix [587358]	N
867	chr6	36963371	36963372	rs708010	30263053	Deng X	2018-09-17	BMC Proc	Genome-wide association study for multiple phenotype analysis.	HDL cholesterol	821 individuals	NA	6p21.2	NA	rs708010-?		5E-6				Affymetrix [587358]	N
867	chr6	36965704	36965705	rs16889362	26584805	Dorajoo R	2015-11-19	Genes Nutr	A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.	Plasma omega-6 polyunsaturated fatty acid levels (linoleic acid)	717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls	NA	6p21.2	NR	rs16889362-G	0.9178	5E-7		0.0448	[0.027-0.062] unit decrease	Illumina [up to 1980188] (imputed)	N
867	chr6	36970609	36970610	rs13204008	28654678	Mandage R	2017-06-27	PLoS One	Genetic factors affecting EBV copy number in lymphoblastoid cell lines derived from the 1000 Genome Project samples.	Epstein-Barr virus copy number in lymphoblastoid cell lines	389 East Asian ancestry individuals, 189 South Asian ancestry individuals, 492 European ancestry individuals, 467 Sub-Saharan African ancestry individuals, 59 African American individuals, 157 Hispanic/Latino individuals	NA	6p21.2	MTCH1, FGD2	rs13204008-?	NR	3E-6	(EA)			NR [at least 880000]	N
867	chr6	36978744	36978745	rs1724088	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	6p21.2	FGD2	rs1724088-A	0.284883	5E-8		0.055100035	[0.035-0.075] unit increase	Affymetrix [7288503] (imputed)	N
867	chr6	36978744	36978745	rs1724088	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	6p21.2		rs1724088-?	NR	8E-9				NR [~ 8900000] (imputed)	N
867	chr6	36983191	36983192	rs12199978	30787463	Escala-Garcia M	2019-02-21	Br J Cancer	Genome-wide association study of germline variants and breast cancer-specific mortality.	Breast cancer specific mortality in breast cancer	7,697 European ancestry cases, 88,964 European ancestry controls	NA	6p21.2	NR	rs12199978-?	NR	7E-6		0.9202764	[0.89-0.95]	Affymetrix, Illumina [~ 10400000] (imputed)	N
867	chr6	36992191	36992192	rs831497	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	6p21.2		rs831497-?	NR	7E-8				NR [~ 8900000] (imputed)	N
867	chr6	36996772	36996773	rs708017	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	6p21.2	FGD2	rs708017-G	0.487137	6E-14		0.01660467	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
867	chr6	37001210	37001211	rs1753294	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p21.2	NR	rs1753294-G	0.455398	2E-14				Affymetrix, Illumina [23467995] (imputed)	N
867	chr6	37001210	37001211	rs1753294	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	6p21.2	NR	rs1753294-G	0.429195	3E-16		0.01544	[0.012-0.019] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
867	chr6	37009233	37009234	rs7748197	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	6p21.2		rs7748197-A	NR	2E-11		0.0147	[0.01-0.019] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
867	chr6	37026955	37026955	rs779565896	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	6p21.2	intergenic	rs779565896-ATAAG	0.4177	3E-9		0.02466579	[0.016-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
867	chr6	37027231	37027232	rs9366927	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	6p21.2		rs9366927-T	NR	2E-13		0.014	[0.01-0.018] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
867	chr6	37027231	37027232	rs9366927	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	6p21.2		rs9366927-T	NR	2E-18		0.0156	[0.012-0.019] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
867	chr6	37027231	37027232	rs9366927	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	6p21.2		rs9366927-T	NR	2E-20		0.017	[0.013-0.021] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
867	chr6	37027231	37027232	rs9366927	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	6p21.2		rs9366927-T	0.509172	2E-18		0.019194301	[0.015-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
867	chr6	37027231	37027232	rs9366927	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	6p21.2		rs9366927-T	0.509155	4E-23		0.021822073	[0.018-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
867	chr6	37027231	37027232	rs9366927	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	6p21.2		rs9366927-T	0.509166	5E-24		0.022292793	[0.018-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
867	chr6	37027231	37027232	rs9366927	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p21.2	NR	rs9366927-T	0.591949	2E-25				Affymetrix, Illumina [24653286] (imputed)	N
867	chr6	37027231	37027232	rs9366927	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	6p21.2	NR	rs9366927-T	0.5101	1E-26		0.019726	[0.016-0.023] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
867	chr6	37027231	37027232	rs9366927	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p21.2	NR	rs9366927-T	0.589284	3E-30				Affymetrix, Illumina [24558453] (imputed)	N
867	chr6	37027231	37027232	rs9366927	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	6p21.2	NR	rs9366927-T	0.510095	8E-32		0.021734	[0.018-0.025] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
867	chr6	37027699	37027700	rs7750403	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	6p21.2		rs7750403-G	NR	1E-8		0.0123	[0.008-0.0166] unit decrease	Affymetrix, Illumina [20536134] (imputed)	N
867	chr6	37029683	37029684	rs9296208	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p21.2	NR	rs9296208-C	0.603889	2E-17				Affymetrix, Illumina [24332387] (imputed)	N
867	chr6	37030754	37030755	rs6457976	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	6p21.2	NR	rs6457976-C	NR	1E-9		0.0145	[0.0098-0.0192] unit decrease	Affymetrix [9000000] (imputed)	N
867	chr6	37037669	37037670	rs4714034	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	6p21.2	FGD2, PIM1	rs4714034-T	NR	2E-6		0.0906899	[0.053-0.128] unit decrease	Illumina [at least 950000] (imputed)	N
867	chr6	37038431	37038432	rs913499	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	6p21.2	COX6A1P2	rs913499-A	0.490791	1E-8		0.0119766	[0.0079-0.0161] unit increase	Affymetrix [NR] (imputed)	N
867	chr6	37038431	37038432	rs913499	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	6p21.2	COX6A1P2	rs913499-A	0.49079	5E-9		0.0121773	[0.0081-0.0163] unit increase	Affymetrix [NR] (imputed)	N
867	chr6	37038431	37038432	rs913499	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	6p21.2	PIM1	rs913499-?	NR	5E-11		0.0168	[0.012-0.021] unit increase	Affymetrix [5701386] (imputed)	N
867	chr6	37038431	37038432	rs913499	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6p21.2		rs913499-?	NR	2E-8				NR [~ 8900000] (imputed)	N
867	chr6	37038431	37038432	rs913499	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	6p21.2	intergenic	rs913499-A	0.4618	9E-12		0.0146	[0.01-0.019] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
867	chr6	37047463	37047464	rs9462258	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	6p21.2		rs9462258-?	NR	7E-17				NR [~ 8900000] (imputed)	N
867	chr6	37048238	37048239	rs9380638	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	6p21.2		rs9380638-A	0.489414	9E-14		0.016597476	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
868	chr6	37105892	37105893	rs2395668	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	6p21.2	PIM1	rs2395668-A	0.840315	1E-8		0.020086	[0.013-0.027] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
868	chr6	37142327	37142328	rs180819997	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6p21.2		rs180819997-?	NR	4E-9				NR [~ 8900000] (imputed)	N
868	chr6	37143132	37143133	rs35893164	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	6p21.2		rs35893164-G	NR	1E-22		0.1238	[0.099-0.148] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
868	chr6	37143132	37143133	rs35893164	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	6p21.2	PIM1	rs35893164-G	0.00945700000000005	2E-13		0.086197875	[0.063-0.109] unit increase	Affymetrix [93095623] (imputed)	N
868	chr6	37143132	37143133	rs35893164	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	6p21.2	PIM1	rs35893164-G	0.00946499999999995	1E-11		0.07892861	[0.056-0.102] unit decrease	Affymetrix [93095623] (imputed)	N
868	chr6	37143132	37143133	rs35893164	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6p21.2	PIM1	rs35893164-G	0.00947399999999998	4E-23		0.11481956	[0.092-0.138] unit increase	Affymetrix [93095623] (imputed)	N
868	chr6	37143132	37143133	rs35893164	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	6p21.2	PIM1	rs35893164-G	0.00945600000000002	4E-17		0.09920533	[0.076-0.122] unit increase	Affymetrix [93095623] (imputed)	N
868	chr6	37143132	37143133	rs35893164	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	6p21.2	PIM1	rs35893164-G	0.00946999999999998	2E-46		0.154193	[0.13-0.18] unit increase	Affymetrix [93095623] (imputed)	N
868	chr6	37143132	37143133	rs35893164	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	6p21.2	PIM1	rs35893164-G	0.00947600000000004	7E-46		0.16046184	[0.14-0.18] unit increase	Affymetrix [93095623] (imputed)	N
868	chr6	37143132	37143133	rs35893164	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p21.2	NR	rs35893164-A	0.991055	1E-12				Affymetrix, Illumina [22063850] (imputed)	N
868	chr6	37143132	37143133	rs35893164	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	6p21.2	NR	rs35893164-A	0.990807	4E-14		0.07756	[0.057-0.098] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
868	chr6	37143132	37143133	rs35893164	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p21.2	NR	rs35893164-G	0.00900053	7E-46				Affymetrix, Illumina [24246363] (imputed)	N
868	chr6	37143132	37143133	rs35893164	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p21.2	NR	rs35893164-G	0.00935332	3E-45				Affymetrix, Illumina [20825802] (imputed)	N
868	chr6	37143132	37143133	rs35893164	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	6p21.2		rs35893164-?	NR	1E-13				NR [~ 8900000] (imputed)	N
868	chr6	37143132	37143133	rs35893164	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	6p21.2		rs35893164-?	NR	9E-40				NR [~ 8900000] (imputed)	N
868	chr6	37143132	37143133	rs35893164	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	6p21.2	PIM1	rs35893164-G	0.0097	2E-13		0.1382155	[0.1-0.18] unit increase	Affymetrix [~ 2500000] (imputed)	N
868	chr6	37143132	37143133	rs35893164	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	6p21.2	PIM1	rs35893164-G	0.0097	1E-14		0.1456206	[0.11-0.18] unit increase	Affymetrix [~ 2500000] (imputed)	N
868	chr6	37164739	37164740	rs34255408	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	6p21.2		rs34255408-A	0.554169	4E-13		0.016363068	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
868	chr6	37174744	37174745	rs1680005	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	6p21.2		rs1680005-G	0.650192	1E-17		0.020104647	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
868	chr6	37174744	37174745	rs1680005	23092984	Goes FS	2012-10-23	Transl Psychiatry	Genome-wide association of mood-incongruent psychotic bipolar disorder.	Bipolar disorder with mood-incongruent psychosis	2,196 European and other ancestry cases, 8,148 European and other ancestry controls	NA	6p21.2	TMEM217	rs1680005-A	NR	7E-6		1.18	[NR]	Affymetrix, Illumina [~ 2500000] (imputed)	N
869	chr6	37254097	37254097	rs560242923	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	6p21.2	TBC1D22B	rs560242923-CT	0.6595	5E-12		0.02661634	[0.019-0.034] unit decrease	Affymetrix [~ 2500000] (imputed)	N
869	chr6	37278932	37278933	rs149709	24927181	Navarini AA	2014-06-13	Nat Commun	Genome-wide association study identifies three novel susceptibility loci for severe Acne vulgaris.	Acne (severe)	1,893 European ancestry cases, 5,132 European ancestry controls	2,063 European ancestry cases, 1,970 European ancestry controls	6p21.2	AK096023, AY927499, C6orf89, CCDC167, CPNE5, FGD2, FTSJD2, MDGA1, MIR4462, MTCH1, PI16, PIM1, PPIL1, RNF8, TBC1D22B, TMEM217, TRNA_Gln, ZFAND3	rs149709-C	0.2018	2E-6		1.19	[1.08-1.30]	Illumina [7300000] (imputed)	N
869	chr6	37310197	37310197	rs570442571	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	6p21.2		rs570442571-AT	0.663165	1E-11		0.016027253	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
869	chr6	37310197	37310197	rs570442571	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	6p21.2	intergenic	rs570442571-AT	0.6637	7E-12		0.02660747	[0.019-0.034] unit decrease	Affymetrix [~ 2500000] (imputed)	N
870	chr6	37386421	37386422	rs2646929	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	6p21.2	NR	rs2646929-G	NR	3E-9		0.0151	[0.01-0.02] unit increase	Affymetrix [9000000] (imputed)	N
870	chr6	37435829	37435829	rs369566109	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	6p21.2	NR	rs369566109-?	NR	7E-6		0.3132	[0.18-0.45] unit increase	Illumina [11133794] (imputed)	N
870	chr6	37451695	37451696	rs904251	19734545	Need AC	2009-09-04	Hum Mol Genet	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA	6p21.2	C6orf129	rs904251-?	0.3806	7E-6	(SWM strategy)			Illumina [475971]	N
870	chr6	37454826	37454827	rs2646928	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	6p21.2	C6orf129, FTSJD2, FLJ45825	rs2646928-G	0.001	1E-6		34.08	[3.52-329.69]	Illumina [1556551]	N
870	chr6	37476999	37477000	rs2254710	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	6p21.2		rs2254710-C	0.236	4E-8		0.013	[0.0091-0.0169] unit increase	Affymetrix [up to 90000000] (imputed)	N
870	chr6	37479971	37479972	rs10947675	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	6p21.2		rs10947675-G	0.481	5E-13		0.008	[0.006-0.01] unit increase	NR [NR] (imputed)	N
870	chr6	37483807	37483808	rs1757188	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (father's age at death or father's attained age)	up to 699,000 European ancestry individuals	NA	6p21.2	NR	rs1757188-G		7E-8				Illumina [458865]	N
870	chr6	37484605	37484606	rs3818987	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	6p21.2	CCDC167	rs3818987-T	0.4734	3E-10		0.013703931	[0.0094-0.018] unit decrease	Affymetrix [11514654] (imputed)	N
870	chr6	37484605	37484606	rs3818987	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	6p21.2		rs3818987-?	NR	6E-10				NR [~ 8900000] (imputed)	N
870	chr6	37486051	37486052	rs57349798	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6p21.2		rs57349798-A	0.4094	9E-11		0.0093	[0.0066-0.012] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
870	chr6	37486051	37486052	rs57349798	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6p21.2	Intergenic	rs57349798-A	0.4094	9E-13	(MTAG)	0.0095	[0.007-0.012] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
870	chr6	37486079	37486080	rs12202055	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	6p21.2	NR	rs12202055-T	0.523	3E-10		0.00681017	[0.0047-0.0089] unit decrease	NR [9732723] (imputed)	N
871	chr6	37487043	37487044	rs1757171	19734545	Need AC	2009-09-04	Hum Mol Genet	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA	6p21.2	AL353597.20	rs1757171-?	0.3884	7E-6	(SWM strategy)			Illumina [475971]	N
871	chr6	37490530	37490531	rs17636328	33239738	Didriksen M	2020-11-25	Commun Biol	Large genome-wide association study identifies three novel risk variants for restless legs syndrome.	Restless legs syndrome	10,257 European ancestry cases, 470,725 European ancestry controls	up to 15,126 European ancestry cases, up to 95,725 European ancestry controls	6p21.2	NR	rs17636328-G	0.2	3E-17		0.89	[0.86-0.92]	Affymetrix, Illumina [15838848] (imputed)	N
871	chr6	37490530	37490531	rs17636328	29029846	Schormair B	2017-11-01	Lancet Neurol	Identification of novel risk loci for restless legs syndrome in genome-wide association studies in individuals of European ancestry: a meta-analysis.	Restless legs syndrome	15,126 European ancestry cases, 95,725 European ancestry controls	30,770 European ancestry cases, 286,913 European ancestry controls	6p21.2	RNF8, CCDC167, MDGA1	rs17636328-A	0.8	3E-26		1.1111112	[1.09-1.14]	Affymetrix, Illumina [6864281] (imputed)	N
871	chr6	37501865	37501866	rs1541227	31926482	Shen H	2020-01-11	Neuropsychopharmacology	Polygenic prediction and GWAS of depression, PTSD, and suicidal ideation/self-harm in a Peruvian cohort.	Post-traumatic stress disorder	1,698 Peruvian cases, 1,716 Peruvian controls	NA	6p21.2	NR	rs1541227-G		3E-6		1.362	[NR]	NR [3389129] (imputed)	N
871	chr6	37506414	37506415	rs2797780	26606652	Alarcon-Riquelme ME	2015-11-25	Arthritis Rheumatol	Genome-Wide Association Study in an Amerindian Ancestry Population Reveals Novel Systemic Lupus Erythematosus Risk Loci and the Role of European Admixture.	Systemic lupus erythematosus	862 Native American ancestry-enriched North American cases, 531 Native American ancestry-enriched South American cases, 1,973 Native American ancestry-enriched North American controls, 344 Native American ancestry-enriched South American controls	NA	6p21.2	Intergenic	rs2797780-C	0.167	5E-6		1.37	[1.21-1.55]	Illumina [580483] (imputed)	N
871	chr6	37527672	37527673	rs6457996	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	6p21.2	Intergenic	rs6457996-T	0.5289	2E-8	(MTAG)	0.0101	[0.0066-0.0136] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
871	chr6	37527672	37527673	rs6457996	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	6p21.2	Intergenic	rs6457996-T	0.5285	1E-11	(MTAG)	0.0112	[0.0079-0.0145] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
871	chr6	37527672	37527673	rs6457996	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6p21.2		rs6457996-T	0.5195	2E-8	(conditional-joint)	0.0079	[0.0052-0.0106] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
871	chr6	37530454	37530455	rs9380681	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	6p21.2	NR	rs9380681-T	NR	1E-6	(GEE model)	0.46432	[0.28-0.65] unit increase	NR [NR] (imputed)	N
871	chr6	37532102	37532103	rs9394438	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.2	NR	rs9394438-G	0.713317013374944	7E-6	(IGP30)	0.1671	[0.094-0.24] unit decrease	Illumina [~ 2500000] (imputed)	N
872	chr6	37630132	37630133	rs13203140	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	6p21.2	MDGA1	rs13203140-C	0.3647	2E-9		1.0255202		Affymetrix [11880941] (imputed)	N
872	chr6	37631767	37631768	rs10947690	30804566	Lane JM	2019-02-25	Nat Genet	Biological and clinical insights from genetics of insomnia symptoms.	Insomnia symptoms (never/rarely vs. usually)	129,270 European ancestry cases, 108,357 European ancestry controls	17,140 European ancestry cases, 61,850 European ancestry controls	6p21.2	MDGA1	rs10947690-G	0.261294	3E-8		1.02	[1.01-1.04]	Affymetrix [14661600] (imputed)	N
872	chr6	37631767	37631768	rs10947690	30804566	Lane JM	2019-02-25	Nat Genet	Biological and clinical insights from genetics of insomnia symptoms.	Insomnia symptoms (never/rarely vs. sometimes/usually)	345,022 European ancestry cases, 108,357 European ancestry controls	17,140 European ancestry cases, 61,850 European ancestry controls	6p21.2	MDGA1	rs10947690-G	0.261294	8E-7		1.02	[1.01-1.04]	Affymetrix [14661600] (imputed)	N
872	chr6	37631767	37631768	rs10947690	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	6p21.2	NR	rs10947690-G	0.2592	4E-12		1.048218	[1.03-1.06]	Affymetrix, Illumina [NR] (imputed)	N
872	chr6	37631767	37631768	rs10947690	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	6p21.2	NA	rs10947690-G	0.2501	2E-8	(Female)	1.049318	[1.03-1.07]	Affymetrix, Illumina [NR] (imputed)	N
872	chr6	37635558	37635559	rs3846881	31320639	Hillary RF	2019-07-18	Nat Commun	Genome and epigenome wide studies of neurological protein biomarkers in the Lothian Birth Cohort 1936.	Neurological blood protein biomarker levels	750 European ancestry individuals	NA	6p21.2	MDGA1	rs3846881-T	0.5132	6E-19	(MDGA1)	0.45856	[0.36-0.56] unit decrease	Illumina [8683751] (imputed)	N
872	chr6	37635880	37635881	rs72847482	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	6p21.2	Intergenic	rs72847482-G	0.8803	1E-9		0.0213	[0.014-0.028] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
872	chr6	37643908	37643909	rs72847500	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	6p21.2	Intergenic	rs72847500-T	0.8733	8E-9	(MTAG)	0.0143	[0.0094-0.0192] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
872	chr6	37645511	37645512	rs12210919	27171184	Kuo HC	2016-05-12	PLoS One	Genome-Wide Association Study Identifies Novel Susceptibility Genes Associated with Coronary Artery Aneurysm Formation in Kawasaki Disease.	Coronary artery aneurysm in Kawasaki disease	11 Taiwanese ancestry cases, 146 Taiwanese ancestry controls	NA	6p21.2	MDGA1	rs12210919-C	0.02055	4E-7		14.02	[NR]	Affymetrix [559609]	N
872	chr6	37659299	37659300	rs3901254	34356046	Oluwafemi OO	2021-07-01	Genes (Basel)	Genome-Wide Association Studies of Conotruncal Heart Defects with Normally Related Great Vessels in the United States.	Conotruncal heart defects with normally related great vessels (without 22q.11.2 deletion syndrome)	294 European ancestry cases, 2,976 European ancestry controls, 641 trios	NA	6p21.2		rs3901254-?	NR	2E-6				Illumina [3311160] (imputed)	N
872	chr6	37660866	37660867	rs6458011	31320639	Hillary RF	2019-07-18	Nat Commun	Genome and epigenome wide studies of neurological protein biomarkers in the Lothian Birth Cohort 1936.	Neurological blood protein biomarker levels	750 European ancestry individuals	NA	6p21.2	MDGA1	rs6458011-C	0.3389	1E-69	(MDGA1)	0.93084	[0.83-1.03] unit increase	Illumina [8683751] (imputed)	N
872	chr6	37663623	37663624	rs9349050	31320639	Hillary RF	2019-07-18	Nat Commun	Genome and epigenome wide studies of neurological protein biomarkers in the Lothian Birth Cohort 1936.	Neurological blood protein biomarker levels	750 European ancestry individuals	NA	6p21.2	MDGA1	rs9349050-T	0.4806	7E-91	(MDGA1)	1.02511	[0.93-1.12] unit increase	Illumina [8683751] (imputed)	N
872	chr6	37663623	37663624	rs9349050	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	6p21.2	NR	rs9349050-C	0.518	7E-9		0.00628814	[0.0042-0.0084] unit increase	NR [9732723] (imputed)	N
872	chr6	37665487	37665488	rs146513610	31320639	Hillary RF	2019-07-18	Nat Commun	Genome and epigenome wide studies of neurological protein biomarkers in the Lothian Birth Cohort 1936.	Neurological blood protein biomarker levels	750 European ancestry individuals	NA	6p21.2	MDGA1	rs146513610-A	0.0795	9E-14	(MDGA1)	0.86876	[0.64-1.1] unit increase	Illumina [8683751] (imputed)	N
872	chr6	37669615	37669616	rs62398404	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Lamb consumption	335,576 European ancestry individuals	NA	6p21.2	MDGA1	rs62398404-?	NR	2E-8		0.0203862	[0.013-0.028] unit decrease	Affymetrix [25921788] (imputed)	N
872	chr6	37673842	37673843	rs73415453	31320639	Hillary RF	2019-07-18	Nat Commun	Genome and epigenome wide studies of neurological protein biomarkers in the Lothian Birth Cohort 1936.	Neurological blood protein biomarker levels	750 European ancestry individuals	NA	6p21.2	MDGA1	rs73415453-C	0.0646	1E-11	(MDGA1)	0.72425	[0.51-0.93] unit decrease	Illumina [8683751] (imputed)	N
872	chr6	37679902	37679903	rs114253244	31320639	Hillary RF	2019-07-18	Nat Commun	Genome and epigenome wide studies of neurological protein biomarkers in the Lothian Birth Cohort 1936.	Neurological blood protein biomarker levels	750 European ancestry individuals	NA	6p21.2	MDGA1	rs114253244-A	0.0472	3E-12	(MDGA1)	0.91906	[0.66-1.18] unit increase	Illumina [8683751] (imputed)	N
872	chr6	37698602	37698603	rs6458016	25865494	Chan Y	2015-04-09	Am J Hum Genet	Genome-wide Analysis of Body Proportion Classifies Height-Associated Variants by Mechanism of Action and Implicates Genes Important for Skeletal Development.	Sitting height ratio	3,545 African American individuals, 12,965 European ancestry women, 8,625 European ancestry men	NA	6p21.2	NR	rs6458016-T	0.792	3E-7	(EA)	0.062	[0.038-0.086] unit increase	Affymetrix, Illumina [up to 10250422] (imputed)	N
872	chr6	37699155	37699156	rs6919087	33568662	Dashti HS	2021-02-10	Nat Commun	Genetic determinants of daytime napping and effects on cardiometabolic health.	Daytime nap	452,633 European ancestry individuals	541,333 European ancestry individuals	6p21.2	MDGA1, ZFAND3	rs6919087-T		1E-18		0.0081	[0.0063-0.0099] unit increase	Affymetrix [13304133] (imputed)	N
872	chr6	37707771	37707772	rs36086366	31320639	Hillary RF	2019-07-18	Nat Commun	Genome and epigenome wide studies of neurological protein biomarkers in the Lothian Birth Cohort 1936.	Neurological blood protein biomarker levels	750 European ancestry individuals	NA	6p21.2	MDGA1	rs36086366-G	0.1443	5E-11	(MDGA1)	0.48463	[0.34-0.63] unit decrease	Illumina [8683751] (imputed)	N
872	chr6	37736857	37736858	rs35475734	34130359	Curtis SW	2021-06-15	Genet Epidemiol	FAT4 identified as a potential modifier of orofacial cleft laterality.	Left unilateral cleft lip	68 Asian ancestry cases, 78 European ancestry cases, 70 Hispanic cases, 1,626 controls	NA	6p21.2	NR	rs35475734-?		5E-6		2.02	[1.49-2.74]	Illumina [539473] (imputed)	N
873	chr6	37761372	37761373	rs9357255	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6p21.2		rs9357255-?	NR	3E-9				NR [~ 8900000] (imputed)	N
873	chr6	37812690	37812691	rs57402213	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	6p21.2	NR	rs57402213-G	0.15806	1E-10		0.0268945	[0.019-0.035] unit increase	NR [19129689] (imputed)	N
875	chr6	38036419	38036420	rs17589516	21901158	Irvin MR	2011-08-25	PLoS One	Genome-wide detection of allele specific copy number variation associated with insulin resistance in African Americans from the HyperGEN study.	Insulin resistance/response	1,040 African American individuals	NA	6p21.2	ZFAND3	rs17589516-C	0.02	4E-6	(HOMA-IR)	45.0	[24.00 - 69.00] % increase	Affymetrix [872243]	N
875	chr6	38036565	38036566	rs2842509	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	6p21.2	NR	rs2842509-?	NR	6E-7				Affymetrix [NR]	N
875	chr6	38106843	38106844	rs9470794	22158537	Cho YS	2011-12-11	Nat Genet	Meta-analysis of genome-wide association studies identifies eight new loci for type 2 diabetes in east Asians.	Type 2 diabetes	5,999 East Asian ancestry cases, 9,001 East Asian ancestry controls, 794 Malay ancestry cases, 1,240 Malay ancestry controls, 159 Filipino ancestry cases, 1,624 Filipino ancestry controls	18,127 East Asian ancestry cases, 17,746 East Asian ancestry controls	6p21.2	ZFAND3	rs9470794-C	0.27	2E-10		1.12	[1.08-1.16]	Affymetrix, Illumina [2626356] (imputed)	N
875	chr6	38108844	38108844	rs766429447	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Serum alkaline phosphatase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	6p21.2	ZFAND3	rs766429447-?		5E-9		0.6581	[0.44-0.88] unit decrease	Illumina [31500000] (imputed)	N
875	chr6	38118741	38118742	rs190027738	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	6p21.2	ZFAND3	rs190027738-A	0.997	4E-6	(AA)	0.216	unit increase	Illumina [NR] (imputed)	N
876	chr6	38147744	38147745	rs7742915	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal cancer	978 Austrian ancestry colorectal cancer cases, 636 Austrian ancestry advanced colorectal adenoma cases, 4,294 European ancestry controls	NA	6p21.2	BTBD9	rs7742915-?		9E-8		1.308	[NR]	Affymetrix [492217] (imputed)	N
876	chr6	38148769	38148770	rs2235711	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	6p21.2	NR	rs2235711-T	NR	3E-16		0.0224	[0.017-0.028] unit increase	Affymetrix [9000000] (imputed)	N
876	chr6	38152755	38152756	rs75849231	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota (alpha diversity)	858 Metropolitan French ancestry individuals	NA	6p21.2	NR	rs75849231-?	NR	6E-6	(Simpson's diversity index)	473058.0	[270311.68-675804.32] unit decrease	Illumina [5293637] (imputed)	N
876	chr6	38214149	38214150	rs17757975	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	6p21.2	NA	rs17757975-T	0.8462	2E-10		0.0155	[0.011-0.02] unit increase	NR [~ 27400000] (imputed)	N
876	chr6	38251374	38251375	rs77928651	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	6p21.2	BTBD9	rs77928651-A	0.999	1E-6	(AA)	0.254	unit increase	Illumina [NR] (imputed)	N
876	chr6	38253427	38253428	rs9349064	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	6p21.2		rs9349064-G	NR	3E-7		0.94415665	[0.923703207784574-0.965062925192713]	Illumina [8919992] (imputed)	N
876	chr6	38253818	38253819	rs139632137	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	6p21.2	BTBD9	rs139632137-A	0.999	2E-6	(AA)	0.283	unit increase	Illumina [NR] (imputed)	N
877	chr6	38314761	38314762	rs80199543	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.2	NR	rs80199543-A	0.01045	2E-8	(GLUD1)	6.219	NR unit increase	Illumina [1671387] (imputed)	N
877	chr6	38318720	38318721	rs2179533	33693626	Jamieson SE	2021-03-09	Clin Infect Dis	Common and rare genetic variants that could contribute to severe otitis media in an Australian Aboriginal population.	Otitis media	21 Martu ancestry cases, 370 Martu ancestry controls	NA	6p21.2		rs2179533-G	NR	6E-6				Illumina [6724284] (imputed)	N
877	chr6	38321009	38321010	rs6922620	33693626	Jamieson SE	2021-03-09	Clin Infect Dis	Common and rare genetic variants that could contribute to severe otitis media in an Australian Aboriginal population.	Otitis media	21 Martu ancestry cases, 370 Martu ancestry controls	NA	6p21.2		rs6922620-G	0.35	1E-6				Illumina [6724284] (imputed)	N
877	chr6	38323469	38323470	rs4714149	33693626	Jamieson SE	2021-03-09	Clin Infect Dis	Common and rare genetic variants that could contribute to severe otitis media in an Australian Aboriginal population.	Otitis media	21 Martu ancestry cases, 370 Martu ancestry controls	NA	6p21.2		rs4714149-A	NR	1E-6				Illumina [6724284] (imputed)	N
877	chr6	38339531	38339532	rs150713181	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	6p21.2	BTBD9	rs150713181-G	0.984	4E-7	(AA)	0.124	NR unit increase	Illumina [NR] (imputed)	N
877	chr6	38351111	38351112	rs114407411	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	6p21.2	BTBD9	rs114407411-A	0.984	2E-7	(AA)	0.128	NR unit increase	Illumina [NR] (imputed)	N
877	chr6	38355304	38355305	rs192452148	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	6p21.2	BTBD9	rs192452148-T	0.984	2E-7	(AA)	0.129	NR unit increase	Illumina [NR] (imputed)	N
877	chr6	38365840	38365841	rs9296249	17637780	Winkelmann J	2007-07-18	Nat Genet	Genome-wide association study of restless legs syndrome identifies common variants in three genomic regions.	Restless legs syndrome	401 European ancestry cases, 1,644 European ancestry controls	906 European ancestry cases, 891 European ancestry controls, 255 French Canadian cases, 287 French Canadian controls	6p21.2	BTBD9	rs9296249-T	0.76	4E-18		1.67	[1.49-1.89]	Affymetrix [236758]	N
877	chr6	38365872	38365873	rs9357271	21779176	Winkelmann J	2011-07-14	PLoS Genet	Genome-wide association study identifies novel restless legs syndrome susceptibility loci on 2p14 and 16q12.1.	Restless legs syndrome	922 European ancestry cases, 1,526 European ancestry controls	3,935 European ancestry cases, 5,754 European ancestry controls	6p21.2	BTBD9	rs9357271-T	0.76	8E-22		1.47	[1.35-1.47]	Affymetrix [301406]	N
877	chr6	38377223	38377224	rs189129074	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	6p21.2	NR	rs189129074-C	8.16E-4	5E-16		0.334803	[0.25-0.42] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
877	chr6	38377223	38377224	rs189129074	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	6p21.2	NR	rs189129074-C	8.18E-4	4E-12		0.290392	[0.21-0.37] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
877	chr6	38378207	38378208	rs9470875	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	6p21.2		rs9470875-?	NR	9E-8				NR [~ 8900000] (imputed)	N
877	chr6	38400138	38400139	rs4565302	25353672	Fernandez-Navarro P	2014-10-29	Int J Cancer	Genome wide association study identifies a novel putative mammographic density locus at 1q12-q21.	Mammographic density	239 European ancestry low mammographic density females, 239 European ancestry high mammographic density females	NA	6p21.2	NR	rs4565302-C	0.09	5E-6		2.94	[1.79-5.00]	Illumina [575374]	N
878	chr6	38437302	38437303	rs9369062	35043453	Qi G	2022-01-18	Genet Epidemiol	Genome-wide association studies of 27 accelerometry-derived physical activity measurements identified novel loci and genetic mechanisms.	Physical activity (Total log acceleration 2am-4am)	88,411 European ancestry individuals	NA	6p21.2		rs9369062-C	0.292	2E-10		0.033	unit decrease	Affymetrix [8951705] (imputed)	N
878	chr6	38437302	38437303	rs9369062	35043453	Qi G	2022-01-18	Genet Epidemiol	Genome-wide association studies of 27 accelerometry-derived physical activity measurements identified novel loci and genetic mechanisms.	Physical activity (Total log acceleration 12am-2am)	88,411 European ancestry individuals	NA	6p21.2		rs9369062-C	0.292	2E-12		0.037	unit decrease	Affymetrix [8951705] (imputed)	N
878	chr6	38437302	38437303	rs9369062	30531941	Doherty A	2018-12-10	Nat Commun	GWAS identifies 14 loci for device-measured physical activity and sleep duration.	Sleep duration	91,105 European ancestry individuals	NA	6p21.2	BTBD9-AS1	rs9369062-A	0.707605	1E-6		0.024680268	[0.015-0.035] SD units decrease	NR [9926106] (imputed)	N
878	chr6	38440969	38440970	rs3923809	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	6p21.2	NA	rs3923809-A	0.6929	2E-8	(Female)	1.046	[1.03-1.06]	Affymetrix, Illumina [NR] (imputed)	N
878	chr6	38440969	38440970	rs3923809	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	6p21.2	BTBD9	rs3923809-G	0.3053	3E-8		1.0222439		Affymetrix [11880941] (imputed)	N
878	chr6	38440969	38440970	rs3923809	17634447	Stefansson H	2007-07-19	N Engl J Med	A genetic risk factor for periodic limb movements in sleep.	Restless legs syndrome	306 European ancestry cases, 15,664 European ancestry controls	311 European ancestry cases, 1,895 European ancestry controls	6p21.2	BTBD9	rs3923809-A	0.66	1E-17		1.9	[1.50-2.20]	Illumina [306937]	N
878	chr6	38447869	38447870	rs13219518	33075057	Li X	2020-10-19	PLoS Genet	Automated feature extraction from population wearable device data identified novel loci associated with sleep and circadian rhythms.	Sleep start time	90,515 individuals	NA	6p21.2	BTBD9	rs13219518-T	NR	2E-10		0.037	[0.025-0.049] unit decrease	NR [11024754] (imputed)	N
878	chr6	38452502	38452503	rs9394502	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	6p21.2	NR	rs9394502-C	0.6657	8E-18		1.0559661	[1.04-1.07]	Affymetrix, Illumina [NR] (imputed)	N
878	chr6	38453961	38453962	rs61192259	33239738	Didriksen M	2020-11-25	Commun Biol	Large genome-wide association study identifies three novel risk variants for restless legs syndrome.	Restless legs syndrome	10,257 European ancestry cases, 470,725 European ancestry controls	up to 15,126 European ancestry cases, up to 95,725 European ancestry controls	6p21.2	BTBD9	rs61192259-C	0.41	2E-103		0.79	[0.77-0.81]	Affymetrix, Illumina [15838848] (imputed)	N
878	chr6	38453961	38453962	rs61192259	29029846	Schormair B	2017-11-01	Lancet Neurol	Identification of novel risk loci for restless legs syndrome in genome-wide association studies in individuals of European ancestry: a meta-analysis.	Restless legs syndrome	15,126 European ancestry cases, 95,725 European ancestry controls	30,770 European ancestry cases, 286,913 European ancestry controls	6p21.2	BTBD9, GLO1	rs61192259-A	0.59	4E-202		1.26	[1.25-1.28]	Affymetrix, Illumina [6864281] (imputed)	N
878	chr6	38464625	38464626	rs7770868	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	6p21.2	NA	rs7770868-A	0.6014	3E-12	(Male)	1.072	[1.05-1.09]	Affymetrix, Illumina [NR] (imputed)	N
878	chr6	38470086	38470087	rs4236060	33568662	Dashti HS	2021-02-10	Nat Commun	Genetic determinants of daytime napping and effects on cardiometabolic health.	Daytime nap	452,633 European ancestry individuals	541,333 European ancestry individuals	6p21.2	BTBD9	rs4236060-T		5E-11		0.0064	[0.0044-0.0084] unit increase	Affymetrix [13304133] (imputed)	N
879	chr6	38550300	38550301	rs1569853	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (family Oxalobacteraceae id.2966)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	6p21.2		rs1569853-T	NR	7E-7		4.9492035	z score decrease	Affymetrix, Illumina [NR] (imputed)	N
879	chr6	38572512	38572513	rs72855171	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial squamous cell lung carcinoma	367 European ancestry cases, 31,563 European ancestry controls	NA	6p21.2	BTBD9	rs72855171-C	0.053	1E-6		2.07	[1.54-2.79]	Illumina [7959153] (imputed)	N
879	chr6	38637537	38637538	rs62396381	33693626	Jamieson SE	2021-03-09	Clin Infect Dis	Common and rare genetic variants that could contribute to severe otitis media in an Australian Aboriginal population.	Otitis media	21 Martu ancestry cases, 370 Martu ancestry controls	NA	6p21.2		rs62396381-G	0.05	5E-7				Illumina [6724284] (imputed)	N
879	chr6	38652424	38652425	rs116078874	29317602	Hall LS	2018-01-10	Transl Psychiatry	Genome-wide meta-analyses of stratified depression in Generation Scotland and UK Biobank.	Major depressive disorder	6,997 European ancestry female cases, 16,172 European ancestry female controls, 3,852 European ancestry male cases, 16,034 European ancestry male controls	NA	6p21.2	GLO1	rs116078874-A	NR	4E-6	(males)	0.47	[0.27-0.67] unit increase	Affymetrix, Illumina [7105178] (imputed)	N
880	chr6	38668853	38668854	rs13200763	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GLO1	5,362 Icelandic ancestry individuals	NA	6p21.2		rs13200763-G	0.3799	1E-15		0.153625	[0.12-0.19] unit decrease	Illumina [7506463] (imputed)	N
880	chr6	38669798	38669799	rs12209477	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.2	GLO1	rs12209477-C	0.65984375	7E-11	(GLO1, 9883_29_3)	0.16836977	[0.12-0.22] unit increase	Illumina [> 1000000] (imputed)	N
880	chr6	38679675	38679676	rs1616723	26942285	Sobota RS	2016-03-01	Am J Hum Genet	A Locus at 5q33.3 Confers Resistance to Tuberculosis in Highly Susceptible Individuals.	Tuberculosis susceptibility in HIV infection	267 Sub-Saharan African cases, 314 Sub-Saharan African controls	NA	6p21.2	GLO1	rs1616723-G	0.201	4E-6		0.439	[0.309-0.624]	Illumina [NR] (imputed)	N
880	chr6	38735315	38735316	rs77875037	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mononucleosis	17,457 European ancestry cases, 68,446 European ancestry controls	NA	6p21.2	NR	rs77875037-?	NR	9E-6		0.8715	[0.5-1.24] unit decrease	Illumina [at least 560000] (imputed)	N
880	chr6	38740306	38740307	rs72849175	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		DNAH8	rs72849175-?	NR	4E-8		0.993986	[NR] unit decrease	Affymetrix [NR] (imputed)	N
880	chr6	38740306	38740307	rs72849175	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		DNAH8	rs72849175-?	NR	2E-9	(male)	1.78028	[NR] unit decrease	Affymetrix [NR] (imputed)	N
881	chr6	38837984	38837985	rs116113578	33602968	Skuladottir AT	2021-02-18	Sci Rep	A meta-analysis uncovers the first sequence variant conferring risk of Bell's palsy.	Bell's palsy	4,714 European ancestry cases, 1,011,520 European ancestry controls	NA	6p21.2	DNAH8	rs116113578-A	9.0E-4	3E-6		4.12844	NR	Affymetrix, Illumina [30341632] (imputed)	N
881	chr6	38864381	38864382	rs9470945	30796134	Soderholm M	2019-02-22	Neurology	Genome-wide association meta-analysis of functional outcome after ischemic stroke.	3-month functional outcome in ischaemic stroke (modified Rankin score)	6,165 European and unknown ancestry individuals	NA	6p21.2	DNAH8	rs9470945-A	0.12	5E-6	(adjusted for severity)	1.28	[1.17-1.39]	Affymetrix, Illumina [~ 8500000] (imputed)	N
881	chr6	38893152	38893153	rs9394554	31766143	Ortega-Azorin C	2019-11-13	Nutrients	Candidate Gene and Genome-Wide Association Studies for Circulating Leptin Levels Reveal Population and Sex-Specific Associations in High Cardiovascular Risk Mediterranean Subjects.	Circulating leptin levels in high cardiovascular risk	351 Spanish mediterranean ancestry men, 615 Spanish mediterranean ancestry women	NA	6p21.2	DNAH8	rs9394554-?	0.16	6E-6	(women, model 3)	0.175	NR unit increase	Illumina [628376]	N
881	chr6	38901866	38901867	rs10807199	26423011	Wain LV	2015-09-27	Lancet Respir Med	Novel insights into the genetics of smoking behaviour, lung function, and chronic obstructive pulmonary disease (UK BiLEVE): a genetic association study in UK Biobank.	Smoking status (heavy vs never)	24,457 European ancestry heavy smokers, 24,474 European ancestry never smokers	NA	6p21.2	DNAH8	rs10807199-T	0.473	3E-8		1.08	[1.05-1.11]	Affymetrix [28509962] (imputed)	N
882	chr6	38954471	38954472	rs9380815	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	6p21.2	NR	rs9380815-?	NR	1E-7				Affymetrix [NR]	N
882	chr6	38975726	38975727	rs191312301	31164008	Mullins N	2019-06-05	Am J Psychiatry	GWAS of Suicide Attempt in Psychiatric Disorders and Association With Major Depression Polygenic Risk Scores.	Suicide attempts in schizophrenia	1,683 European ancestry attempters, 2,946 European ancestry nonattempters	NA	6p21.2	NR	rs191312301-C	0.10999999999999999	3E-6		1.4084507	[1.22-1.61]	NR [8814543] (imputed)	N
882	chr6	39016635	39016636	rs10305420	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	24,646 African American cases, 31,446 African American controls	NA	6p21.2	NR	rs10305420-C	0.92	9E-9		0.142	[0.093-0.191] unit increase	Affymetrix, Illumina [945603] (imputed)	N
882	chr6	39016635	39016636	rs10305420	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	6p21.2	NR	rs10305420-C	0.6161	3E-11		0.0316	[0.022-0.041] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
882	chr6	39032834	39032835	rs2254336	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	6p21.2		rs2254336-T	NR	1E-8		0.0108	[0.0071-0.0145] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
882	chr6	39032834	39032835	rs2254336	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	6p21.2	NA	rs2254336-A	0.4763	3E-6		0.0081	[0.0048-0.0114] unit decrease	NR [~ 27400000] (imputed)	N
882	chr6	39033594	39033595	rs3765467	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	6p21.2		rs3765467-A	0.183736771	2E-18		0.10516303	[0.082-0.129] unit decrease	Illumina [13429769] (imputed)	N
882	chr6	39033594	39033595	rs3765467	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	6p21.2		rs3765467-A	NR	5E-18		0.103	[0.08-0.126] unit decrease	Affymetrix, Illumina [25845091] (imputed)	N
882	chr6	39033594	39033595	rs3765467	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Blood sugar levels	93,146 Japanese ancestry individuals	NA	6p21.2	GLP1R	rs3765467-?	NR	7E-10		0.03683	[0.025-0.049] unit decrease novel	Illumina [6108953] (imputed)	N
882	chr6	39037661	39037662	rs9380826	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	6p21.2		rs9380826-C	NR	7E-13		0.0922	[0.067-0.117] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
882	chr6	39037661	39037662	rs9380826	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	46,511 Asian ancestry cases, 169,776 Asian ancestry controls	NA	6p21.2	NR	rs9380826-G	0.8196	2E-14		0.0895	[0.067-0.112] unit increase	Affymetrix, Illumina [1077427] (imputed)	N
882	chr6	39037661	39037662	rs9380826	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	6p21.2		rs9380826-C	0.182588269	1E-17		0.91200566	[0.89298234-0.931434249]	Illumina [8919992] (imputed)	N
882	chr6	39039139	39039140	rs9394574	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	6p21.2	KCNK16	rs9394574-A	0.82	4E-14		1.09	1.07-1.12	Illumina [12557761] (imputed)	N
882	chr6	39040468	39040469	rs9296285	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	6p21.2		rs9296285-G	0.179631951	7E-13		0.0922384	[0.067-0.117] unit decrease	Illumina [13134967] (imputed)	N
882	chr6	39046643	39046644	rs742762	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	6p21.2	GLP1R	rs742762-A	0.712	2E-22		1.08	[1.06-1.09]	Affymetrix, Illumina [11800000] (imputed)	N
882	chr6	39046793	39046794	rs10305492	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	6p21.2		rs10305492-A	NR	1E-10		0.0598	[0.042-0.078] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
882	chr6	39046793	39046794	rs10305492	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	6p21.2		rs10305492-A	NR	4E-25		0.1034	[0.084-0.123] unit decrease	Affymetrix, Illumina [20535873] (imputed)	N
882	chr6	39046793	39046794	rs10305492	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	200,622 European ancestry individuals	NA	6p21.2	GLP1R	rs10305492-A	0.0144	8E-16		0.0763	[0.057-0.096] unit decrease	Affymetrix, Illumina [34064007] (imputed)	N
882	chr6	39046793	39046794	rs10305492	25631608	Wessel J	2015-01-29	Nat Commun	Low-frequency and rare exome chip variants associate with fasting glucose and type 2 diabetes susceptibility.	Fasting blood glucose	50,900 European ancestry non-diabetic individuals, 9,664 African American non-diabetic individuals	NA	6p21.2	GLP1R	rs10305492-A	0.01	3E-12		0.09	[0.065-0.115] unit decrease	Illumina [197481]	N
882	chr6	39046793	39046794	rs10305492	25625282	Mahajan A	2015-01-27	PLoS Genet	Identification and functional characterization of G6PC2 coding variants influencing glycemic traits define an effector transcript at the G6PC2-ABCB11 locus.	Fasting blood glucose adjusted for BMI	up to 33,231 non-diabetic individuals	NA	6p21.2	GLP1R	rs10305492-A	0.01	5E-7		0.073	[0.044-0.102] unit decrease	Illumina [106489]	N
883	chr6	39069290	39069291	rs57143316	33539483	Li Z	2021-02-04	PLoS One	Bivariate genome-wide association study (GWAS) of body mass index and blood pressure phenotypes in northern Chinese twins.	Body mass index and systolic blood pressure (bivariate analysis)	274 Chinese ancestry dizygotic twins	NA	6p21.2	SAYSD1	rs57143316-?	NR	5E-6				Illumina [7401356] (imputed)	N
883	chr6	39069290	39069291	rs57143316	33539483	Li Z	2021-02-04	PLoS One	Bivariate genome-wide association study (GWAS) of body mass index and blood pressure phenotypes in northern Chinese twins.	Body mass index and diastolic blood pressure (bivariate analysis)	274 Chinese ancestry dizygotic twins	NA	6p21.2	SAYSD1	rs57143316-?	NR	7E-6				Illumina [7401356] (imputed)	N
883	chr6	39112410	39112411	rs148639156	28082259	Pankow JS	2017-01-12	Arterioscler Thromb Vasc Biol	Identification of Genetic Variants Linking Protein C and Lipoprotein Metabolism: The ARIC Study (Atherosclerosis Risk in Communities).	Protein C levels	10,778 European ancestry individuals, 2,706 African American individuals	NA	6p21.2	SAYSD1	rs148639156-G	0.02	5E-9	(AA)	0.4	[NR] ?g/mL increase	Affymetrix [at least 22484459] (imputed)	N
883	chr6	39115412	39115413	rs7751419	26516778	Bis JC	2015-10-30	PLoS One	Drug-Gene Interactions of Antihypertensive Medications and Risk of Incident Cardiovascular Disease: A Pharmacogenomics Study from the CHARGE Consortium.	Cardiovascular disease in hypertension (calcium channel blocker interaction)	Up to 3,527 European ancestry individuals with cardiovascular disease, up to 11,848 European ancestry individuals without cardiovascular disease	Up to 1,751 European ancestry individuals with cardiovascular disease, up to 1,267 African American ancestry individuals with cardiovascular disease, up to 2,874 African American ancestry individuals without cardiovascular disease	6p21.2	C6orf64	rs7751419-T	0.29	3E-6	(EA)	0.26	unit increase	Affymetrix, Illumina [1807456] (imputed)	N
883	chr6	39117697	39117698	rs2115200	23568457	Wade TD	2013-04-09	Int J Eat Disord	Genetic variants associated with disordered eating.	Eating disorders	543 European ancestry female cases, 1,116 European ancestry female controls	NA	6p21.2	KCNK5, C6orf64	rs2115200-T	0.768	2E-6		0.098	[0.057-0.139] unit increase	Illumina [6150213] (imputed)	N
883	chr6	39124447	39124448	rs1544935	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Urolithiasis	11,699 East Asian ancestry cases, 167,027 East Asian ancestry controls	NA	6p21.2		rs1544935-G	0.169134097	2E-8		0.106760845	[0.069-0.144] unit increase	Illumina [13429980] (imputed)	N
883	chr6	39124447	39124448	rs1544935	31630189	Casanova F	2019-10-20	Hum Mol Genet	A genome-wide association study implicates multiple mechanisms influencing raised urinary albumin-creatinine ratio.	Urinary albumin-to-creatinine ratio	437,027 European ancestry individuals	60,130 individuals	6p21.2	KCNK5	rs1544935-G	0.216	2E-11	(EA)	0.017	[0.013-0.021] unit increase	NR [12082474] (imputed)	N
883	chr6	39124447	39124448	rs1544935	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals, 6,795 African American individuals, 6,324 East Asian ancestry individuals, 2,335 South Asian ancestry individuals, 1,442 Hispanic individuals	NA	6p21.2	KCNK5	rs1544935-T	NR	3E-12		0.0167	[0.012-0.021] unit decrease	Affymetrix, Illumina [8034757] (imputed)	N
883	chr6	39124447	39124448	rs1544935	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals	NA	6p21.2	KCNK5	rs1544935-T	0.7836	1E-12		0.0172549	[0.013-0.022] unit decrease	Affymetrix, Illumina [8603712] (imputed)	N
883	chr6	39124447	39124448	rs1544935	30975718	Tanikawa C	2019-04-11	J Am Soc Nephrol	Novel Risk Loci Identified in a Genome-Wide Association Study of Urolithiasis in a Japanese Population.	Urolithiasis	11,130 Japanese ancestry cases, 187,639 Japanese ancestry controls	2,289 Japanese ancestry cases, 3,817 Japanese ancestry controls	6p21.2	KCNK5	rs1544935-G	0.169	5E-10		1.1111112	[NR]	Illumina [6603247] (imputed)	N
883	chr6	39124447	39124448	rs1544935	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	6p21.2	SAYSD1, KCNK5	rs1544935-T		9E-10		0.176	unit increase	Affymetrix [at least 2696785] (imputed)	N
883	chr6	39124447	39124448	rs1544935	26343387	Nikpay M	2015-09-07	Nat Genet	A comprehensive 1,000 Genomes-based genome-wide association meta-analysis of coronary artery disease.	Myocardial infarction	27,509 European ancestry cases, 130 African American cases, 278 Hispanic American cases, 10,257 South Asian ancestry cases, 288 Lebanese ancestry cases, 1,687 East Asian ancestry cases, 99,121 European ancestry controls, 2,778 African American controls, 3,337 Hispanic American controls, 12,899 South Asian ancestry controls, 466 Lebanese ancestry controls, 7,709 East Asian ancestry controls	NA	6p21.2	KCNK5	rs1544935-T	0.81	3E-8		1.08	[1.05-1.10]	Affymetrix, Illumina [8600000] (imputed)	N
883	chr6	39124681	39124682	rs9942541	24564958	St Pourcain B	2014-02-24	Mol Autism	Variability in the common genetic architecture of social-communication spectrum phenotypes during childhood and adolescence.	Social communication problems	Up to 5,628 European ancestry individuals	NA	6p21.2	KCNK5	rs9942541-T	0.05	5E-6	(Age 8)	0.23	[0.13-0.33] unit increase	Illumina [2293137] (imputed)	N
883	chr6	39134098	39134099	rs56336142	26343387	Nikpay M	2015-09-07	Nat Genet	A comprehensive 1,000 Genomes-based genome-wide association meta-analysis of coronary artery disease.	Coronary artery disease	42,096 European ancestry cases, 361 African American cases, 758 Hispanic American cases, 12,658 South Asian ancestry cases, 1,802 Lebanese ancestry cases, 3,614 East Asian ancestry cases, 99,121 European ancestry controls, 2,778 African American controls, 3,337 Hispanic American controls, 12,899 South Asian ancestry controls, 466 Lebanese ancestry controls, 7,709 East Asian ancestry controls	NA	6p21.2	KCNK5	rs56336142-T	0.807262	2E-8		1.07	[1.04- 1.09]	Affymetrix, Illumina [8600000] (imputed)	N
883	chr6	39136650	39136651	rs12214118	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	6p21.2	NR	rs12214118-A	0.79	5E-12		0.0155	[0.011-0.02] unit increase	NR [NR]	N
883	chr6	39140124	39140125	rs755852	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	6p21.2		rs755852-?	NR	5E-12				NR [~ 8900000] (imputed)	N
883	chr6	39140383	39140384	rs755853	32682390	Wang W	2020-07-18	BMC Genomics	Heritability and genome-wide association analyses of fasting plasma glucose in Chinese adult twins.	Fasting plasma glucose	382 Chinese ancestry twin pairs	NA	6p21.2	KCNK5	rs755853-?		6E-6				NR [7405822] (imputed)	N
883	chr6	39145522	39145523	rs62398607	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Urolithiasis	6,223 European ancestry cases, 482,123 European ancestry controls, 11,699 East Asian ancestry cases, 167,027 East Asian ancestry controls	NA	6p21.2		rs62398607-C	NR	5E-12		0.1017	[0.073-0.131] unit increase	Affymetrix, Illumina [25845211] (imputed)	N
883	chr6	39146229	39146230	rs1155347	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	6p21.2		rs1155347-C	NR	6E-11		0.0133	[0.0094-0.0172] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
883	chr6	39146229	39146230	rs1155347	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	20,917 European ancestry cases, 440,906 European ancestry controls, 14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	6p21.2		rs1155347-C	NR	2E-16		0.0899	[0.068-0.111] unit decrease	Affymetrix, Illumina [25841367] (imputed)	N
883	chr6	39146229	39146230	rs1155347	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	6p21.2		rs1155347-C	0.162831702	9E-11		0.12052582	[0.084-0.157] unit decrease	Illumina [13427135] (imputed)	N
883	chr6	39146229	39146230	rs1155347	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	6p21.2		rs1155347-C	0.219189	1E-10		0.017372549	[0.012-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
883	chr6	39146229	39146230	rs1155347	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	6p21.2		rs1155347-C	0.219192	2E-12		0.019000009	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
883	chr6	39146229	39146230	rs1155347	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	6p21.2	NR	rs1155347-C	0.220695	2E-10		0.014379	[0.01-0.0188] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
883	chr6	39146229	39146230	rs1155347	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p21.2	NR	rs1155347-C	0.206127	6E-15				Affymetrix, Illumina [24653286] (imputed)	N
883	chr6	39146229	39146230	rs1155347	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	6p21.2	NR	rs1155347-C	0.220882	2E-15		0.017833	[0.013-0.022] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
883	chr6	39146229	39146230	rs1155347	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p21.2	NR	rs1155347-C	0.206465	2E-19				Affymetrix, Illumina [24558453] (imputed)	N
883	chr6	39146229	39146230	rs1155347	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	6p21.2	NR	rs1155347-C	0.220865	6E-19		0.020019	[0.016-0.024] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
883	chr6	39146229	39146230	rs1155347	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	6p21.2	KCNK5	rs1155347-T	0.780573	6E-9		0.0135478	[0.009-0.0181] unit decrease	Affymetrix [NR] (imputed)	N
883	chr6	39146229	39146230	rs1155347	31729369	Howles SA	2019-11-15	Nat Commun	Genetic variants of calcium and vitamin D metabolism in kidney stone disease.	Kidney stones	6,536 British ancestry cases, 5,587 Japanese ancestry cases, 388,508 British ancestry controls, 28,870 Japanese ancestry controls	NA	6p21.2	KCNK5	rs1155347-C	0.22	9E-11		1.13	[1.09-1.17]	Affymetrix, Illumina [~ 5000000] (imputed)	N
883	chr6	39146229	39146230	rs1155347	31729369	Howles SA	2019-11-15	Nat Commun	Genetic variants of calcium and vitamin D metabolism in kidney stone disease.	Kidney stones	6,536 British ancestry cases, 388,508 British ancestry controls	NA	6p21.2	KCNK5	rs1155347-C	0.22	3E-7		1.12	[1.07-1.17]	Affymetrix [~ 8400000] (imputed)	N
883	chr6	39147178	39147179	rs12211281	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	6p21.2		rs12211281-T	NR	1E-12		0.0144	[0.01-0.018] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
883	chr6	39147178	39147179	rs12211281	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	6p21.2		rs12211281-T	NR	5E-15		0.0162	[0.012-0.02] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
883	chr6	39148169	39148170	rs55856036	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	6p21.2		rs55856036-C	NR	5E-11		0.0141	[0.01-0.0182] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
883	chr6	39148169	39148170	rs55856036	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p21.2	NR	rs55856036-C	0.20025	2E-10				Affymetrix, Illumina [24332387] (imputed)	N
883	chr6	39149783	39149784	rs9394577	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Diastolic blood pressure (long-term average)	5,304 African American individuals, 13,137 European ancestry individuals, 1,317 Hispanic individuals, 1,439 admixed individuals, 703 Chinese ancestry individuals	6,500 African American individuals, 2,451 European ancestry individuals, 2,869 Hispanic individuals	6p21.2	NR	rs9394577-T	0.2126	8E-7		0.3904	[0.24-0.55] mmHg increase	Affymetrix, Illumina [NR] (imputed)	N
883	chr6	39150097	39150098	rs1428373	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (father's age at death)	309,383 European ancestry individuals	NA	6p21.2	NR	rs1428373-A	NR	3E-6		0.01204	[0.007-0.0171] unit decrease	Illumina [541614]	N
883	chr6	39150656	39150657	rs55902013	32469254	Matsunaga H	2020-05-29	Circ Genom Precis Med	Transethnic Meta-analysis of Genome-wide Association Studies Identifies Three New Loci and Characterizes Population-specific Differences for Coronary Artery Disease.	Coronary artery disease	15,302 Japanese ancestry cases, 76,014 European and East Asian ancestry cases, 36,140 Japanese ancestry controls, 264,785 European and East Asian ancestry controls	NA	6p21.2	SAYSD1, KCNK5	rs55902013-C	0.8	4E-10		1.06	[1.03-1.09]	Illumina [5167567] (imputed)	N
883	chr6	39152040	39152041	rs56015508	28714975	Nelson CP	2017-07-17	Nat Genet	Association analyses based on false discovery rate implicate new loci for coronary artery disease.	Coronary artery disease (myocardial infarction, percutaneous transluminal coronary angioplasty, coronary artery bypass grafting, angina or chromic ischemic heart disease)	18,467 European and unknown ancestry cases, 45,264 European and unknown ancestry controls	57,347 European and unknown ancestry cases, 219,521 European and unknown ancestry controls	6p21.2	KCNK5	rs56015508-C	0.794	1E-7		1.06	[1.03-1.08]	Affymetrix [9149595] (imputed)	N
883	chr6	39154865	39154866	rs2004295	32632093	Guo Y	2020-07-06	Nat Commun	A genome-wide cross-phenotype meta-analysis of the association of blood pressure with migraine.	Migraine and/or diastolic blood pressure	757,601 European ancestry individuals with blood pressure measurements, 59,674 European ancestry migraine cases, 316,078 European ancestry controls	NA	6p21.2	NR	rs2004295-?	NR	3E-16				NR [up to 7000000]	N
883	chr6	39156409	39156410	rs10947786	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	6p21.2	KCNK5	rs10947786-G	0.790758	6E-14		1.07	[1.05-1.09]	NR [8126035] (imputed)	N
883	chr6	39156409	39156410	rs10947786	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	6p21.2	KCNK5	rs10947786-?	NR	2E-15		0.047373	[0.036-0.059] unit decrease	Illumina [4804024] (imputed)	N
883	chr6	39156409	39156410	rs10947786	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	6p21.2	KCNK5	rs10947786-G	0.784927	2E-9		0.0143831	[0.0097-0.0191] unit decrease	Affymetrix [NR] (imputed)	N
883	chr6	39165858	39165859	rs9394578	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	6p21.2	KCNK5	rs9394578-A	0.2577	3E-14		0.0164	[0.012-0.021] unit decrease	Affymetrix [18391927] (imputed)	N
883	chr6	39171861	39171862	rs733701	32632093	Guo Y	2020-07-06	Nat Commun	A genome-wide cross-phenotype meta-analysis of the association of blood pressure with migraine.	Migraine and/or systolic blood pressure	757,601 European ancestry individuals with blood pressure measurements, 59,674 European ancestry migraine cases, 316,078 European ancestry controls	NA	6p21.2	NR	rs733701-?	NR	8E-15				NR [up to 7000000]	N
883	chr6	39174921	39174922	rs10947789	30547231	Ahluwalia TS	2018-12-13	Diabetologia	A novel rare CUBN variant and three additional genes identified in Europeans with and without diabetes: results from an exome-wide association study of albuminuria.	Albuminuria	13,226 European ancestry individuals	23,364 European ancestry individuals	6p21.2	KCNK5	rs10947789-A	0.24	9E-6				Illumina [142397]	N
883	chr6	39174921	39174922	rs10947789	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	6p21.2	KCNK5	rs10947789-T	0.7671	8E-12		0.0413	[0.03-0.053] unit increase	Affymetrix [at least 7947838] (imputed)	N
883	chr6	39174921	39174922	rs10947789	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	6p21.2	KCNK5	rs10947789-T	0.7666	3E-8		0.0413	[0.027-0.056] unit increase	NR [8041861] (imputed)	N
883	chr6	39174921	39174922	rs10947789	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	6p21.2	KCNK5	rs10947789-T	0.7666	3E-12		0.0462	[0.033-0.059] unit increase	NR [8041861] (imputed)	N
883	chr6	39177573	39177574	rs9462492	33276381	Cheng CF	2020-12-04	Am J Hypertens	Genome-wide and candidate gene association analyses identify a 14-SNPs combination for hypertension in patients with type 2 diabetes.	Hypertension in type 2 diabetes	454 Han Chinese ancestry cases, 545 Han Chinese ancestry controls	563 Han Chinese ancestry cases, 359 Han Chinese ancestry controls	6p21.2	KCNK5	rs9462492-G		2E-6		1.84	[1.43-2.38]	Affymetrix, Illumina [NR] (imputed)	N
883	chr6	39183469	39183470	rs10456100	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	6p21.2	KCNK5	rs10456100-T	0.273	5E-10		0.044	[0.03-0.058] unit increase	Affymetrix [7947838] (imputed)	N
883	chr6	39183469	39183470	rs10456100	27322543	Gormley P	2016-06-20	Nat Genet	Meta-analysis of 375,000 individuals identifies 38 susceptibility loci for migraine.	Migraine	59,674 European ancestry cases, 316,078 European ancestry controls	NA	6p21.2	KCNK5	rs10456100-T	0.28	7E-13		1.06	[1.04-1.07]	Affymetrix, Illumina, Perlegen [8094889] (imputed)	N
883	chr6	39183469	39183470	rs10456100	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Migraine	53,109 European ancestry cases, 230,876 European ancestry controls	NA	6p21.2	intergenic	rs10456100-?	NR	5E-7				Illumina [13763073] (imputed)	N
883	chr6	39183469	39183470	rs10456100	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NA	6p21.2	intergenic	rs10456100-T	0.27	5E-7		1.07	[1.04-1.10]	Affymetrix, Illumina [~ 2300000] (imputed)	N
883	chr6	39185604	39185605	rs2815114	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Intraocular pressure	101,939 European ancestry cases	NA	6p21.2	NR	rs2815114-G		2E-8		0.08	[0.06-0.1] unit increase	NR [NR]	N
883	chr6	39187885	39187886	rs2815116	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6p21.2		rs2815116-?	NR	2E-17				NR [~ 8900000] (imputed)	N
883	chr6	39188296	39188297	rs537740323	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	6p21.2	NR	rs537740323-A	0.999112	3E-10		0.210172	[0.14-0.28] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
884	chr6	39202156	39202157	rs9366999	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6p21.2	KCNK5	rs9366999-A	0.409	7E-6	(WC )	0.03	[NR] cm increase	Illumina [899892]	N
884	chr6	39230306	39230307	rs1182864	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	6p21.2		rs1182864-?	NR	4E-8				NR [~ 8900000] (imputed)	N
884	chr6	39230570	39230571	rs4711589	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	6p21.2	TUBBP9	rs4711589-?	NR	8E-9		0.0162	[0.011-0.021] unit increase	Affymetrix [5701386] (imputed)	N
884	chr6	39234906	39234907	rs55804343	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	6p21.2	NR	rs55804343-C	0.703761	7E-8		0.0123171	[0.0078-0.0168] unit decrease	Affymetrix [NR] (imputed)	N
884	chr6	39234906	39234907	rs55804343	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	6p21.2	KCNK17	rs55804343-C	0.703761	2E-12		0.0160869	[0.012-0.021] unit decrease	Affymetrix [NR] (imputed)	N
884	chr6	39242162	39242163	rs145211473	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	6p21.2		rs145211473-?	NR	5E-11				NR [~ 8900000] (imputed)	N
884	chr6	39250836	39250837	rs2758886	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	6p21.2	KCNK17	rs2758886-A	0.3	3E-8		0.023	[NR] unit increase	NR [NR] (imputed)	N
884	chr6	39261933	39261934	rs2815062	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	6p21.2		rs2815062-G	NR	4E-12		0.0149	[0.011-0.019] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
884	chr6	39282035	39282036	rs10947804	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	6p21.2		rs10947804-C	NR	9E-9		1.0503607	[1.03289077331286-1.06812618115103]	Illumina [8919992] (imputed)	N
884	chr6	39282370	39282371	rs34247110	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	6p21.2	NR	rs34247110-G	0.5159	2E-15		0.0305	[0.023-0.038] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
884	chr6	39282370	39282371	rs34247110	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	6p21.2	KCNK16	rs34247110-A	0.37	1E-9		1.06	1.04-1.08	Illumina [12557761] (imputed)	N
884	chr6	39282747	39282748	rs11756070	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	6p21.2		rs11756070-A	NR	5E-8		0.0114	[0.0073-0.0155] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
884	chr6	39284049	39284050	rs1535500	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	6p21.2	KCNK16	rs1535500-T	0.493	5E-7		0.053	[0.031-0.075] unit increase	Affymetrix, Illumina [NR] (imputed)	N
884	chr6	39284049	39284050	rs1535500	24509480	Mahajan A	2014-02-09	Nat Genet	Genome-wide trans-ancestry meta-analysis provides insight into the genetic architecture of type 2 diabetes susceptibility.	Type 2 diabetes	12,171 European ancestry cases, 56,862 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls	21,491 European ancestry cases, 55,647 European ancestry controls	6p21.2	KCNK16	rs1535500-T	0.59	8E-6		1.13	[1.08-1.19]	Affymetrix, Illumina [2500000] (imputed)	N
884	chr6	39284049	39284050	rs1535500	22158537	Cho YS	2011-12-11	Nat Genet	Meta-analysis of genome-wide association studies identifies eight new loci for type 2 diabetes in east Asians.	Type 2 diabetes	5,999 East Asian ancestry cases, 9,001 East Asian ancestry controls, 794 Malay ancestry cases, 1,240 Malay ancestry controls, 159 Filipino ancestry cases, 1,624 Filipino ancestry controls	18,127 East Asian ancestry cases, 17,746 East Asian ancestry controls	6p21.2	KCNK16	rs1535500-T	0.42	2E-8		1.08	[1.05-1.11]	Affymetrix, Illumina [2626356] (imputed)	N
884	chr6	39290708	39290709	rs3807044	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Tenofovir clearance in HIV infection	243 European ancestry cases, 149 African American cases, 100 Hispanic American cases, 9 unknown ancestry cases	NA	6p21.2	KCNK16	rs3807044-?		6E-7				Illumina [~ 5190000] (imputed)	N
884	chr6	39307031	39307032	rs9471075	24556642	Zeng Z	2014-02-18	Caries Res	Genome-wide association study of primary dentition pit-and-fissure and smooth surface caries.	Smooth-surface caries	1006 European ancestry individuals	NA	6p21.2	KIF6	rs9471075-A	0.0247	1E-6		5.25	[NR] unit decrease	Illumina [1216189] (imputed)	N
884	chr6	39308741	39308742	rs9471077	29618737	Napier MD	2018-04-04	Sci Rep	Genome-wide association study and meta-analysis identify loci associated with ventricular and supraventricular ectopy.	Supraventricular ectopy	1,618 European ancestry cases, 20,899 European ancestry controls, 652 African ancestry cases, 8,622 African ancestry controls, 354 Hispanic/Latino ancestry cases, 10,831 Hispanic/Latino ancestry controls	NA	6p21.2	KIF6	rs9471077-G	NR	8E-7		1.1764705	[1.1-1.25]	Affymetrix, Illumina [NR] (imputed)	N
884	chr6	39317738	39317739	rs112958846	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric bone mineral content (femoral neck)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	6p21.2	NR	rs112958846-A	0.051	4E-6	(Females)	0.48147	[0.28-0.68] unit increase	Illumina [~ 6600000] (imputed)	N
884	chr6	39317738	39317739	rs112958846	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric bone mineral content (femoral neck)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	6p21.2	NR	rs112958846-A	0.05	4E-6		0.347428	[0.2-0.49] unit increase	Illumina [~ 6600000] (imputed)	N
885	chr6	39323363	39323364	rs189689403	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		KIF6	rs189689403-?	NR	9E-12		2.74354	[NR] unit decrease	Affymetrix [NR] (imputed)	N
885	chr6	39338989	39338990	rs78975723	34074324	Wan JY	2021-06-01	Diabetol Metab Syndr	Genome-wide association analysis of metabolic syndrome quantitative traits in the GENNID multiethnic family study.	Fasting glucose	281 African American individuals from 73 families, 516 European ancestry individuals from 75 families, 125 Japanese American individuals from 15 families, 598 Mexican American individuals from 96 families	NA	6p21.2	KIF6	rs78975723-G	0.01	3E-8	(African American)	1.75	[1.14-2.36] unit increase	Illumina [up to 13042663] (imputed)	N
885	chr6	39361853	39361854	rs9296295	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6p21.2	KIF6	rs9296295-A	0.06	6E-6	(TG/HDLC )	0.03	[NR] mmol/L increase	Illumina [899892]	N
885	chr6	39365977	39365978	rs9471089	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6p21.2		rs9471089-?	NR	4E-10				NR [~ 8900000] (imputed)	N
885	chr6	39419991	39419992	rs527871768	33979322	Currant H	2021-05-12	PLoS Genet	Genetic variation affects morphological retinal phenotypes extracted from UK Biobank optical coherence tomography images.	Retinal nerve fibre layer thickness or ganglion cell inner plexiform layer thickness (MTAG)	31,434 European ancestry individuals	NA	6p21.2	NR	rs527871768-A	0.01	3E-10		1.16	[0.79-1.53] unit increase	Affymetrix [9231066] (imputed)	N
885	chr6	39419991	39419992	rs527871768	33979322	Currant H	2021-05-12	PLoS Genet	Genetic variation affects morphological retinal phenotypes extracted from UK Biobank optical coherence tomography images.	Retinal nerve fibre layer (RNFL) thickness	31,434 European ancestry individuals	NA	6p21.2	NR	rs527871768-A	0.01	3E-10		1.16	[0.79-1.53] unit increase	Affymetrix [9231066] (imputed)	N
886	chr6	39526866	39526867	rs1520	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	6p21.2		rs1520-G	0.36	6E-27		10.74	z score increase	Affymetrix [9061022] (imputed)	N
886	chr6	39526866	39526867	rs1520	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	6p21.2	NR	rs1520-G	0.3712	1E-17				NR [9056863] (imputed)	N
886	chr6	39526866	39526867	rs1520	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 5)	19,670 European ancestry individuals	NA	6p21.2		rs1520-?	NR	4E-25				NR [9705931] (imputed)	N
886	chr6	39526866	39526867	rs1520	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 21)	3,566 European ancestry individuals	4,680 European ancestry individuals	6p21.2		rs1520-G	0.37703309	2E-22				Illumina [7417619] (imputed)	N
886	chr6	39526866	39526867	rs1520	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	6p21.2	KIF6, DAAM2	rs1520-?		7E-16				NR [7428630] (imputed)	N
886	chr6	39526894	39526895	rs6458117	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	6p21.2		rs6458117-C	0.37	3E-116		22.92	z score increase	Affymetrix [9061022] (imputed)	N
886	chr6	39528981	39528982	rs9380880	22542470	Ovsyannikova IG	2012-04-25	Vaccine	Genome-wide association study of antibody response to smallpox vaccine.	Immune response to smallpox vaccine (IL-6)	217 African American individuals, 580 European ancestry individuals, 217 Hispanic individuals	NA	6p21.2	LOC100131899, KIF6	rs9380880-?		1E-7	(Hispanic)			Illumina [NR]	N
886	chr6	39529691	39529692	rs2092524	31809533	Han X	2019-09-06	Hum Mol Genet	Genome-wide association analysis of 95 549 individuals identifies novel loci and genes influencing optic disc morphology.	Optic disc size	67,040 British ancestry individuals	28,509 European ancestry individuals	6p21.2	KIF6	rs2092524-A	0.34	1E-13		0.01	unit increase	Affymetrix [8928767] (imputed)	N
886	chr6	39536575	39536576	rs4714259	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	6p21.2	NR	rs4714259-C	0.3794	1E-17				NR [9056863] (imputed)	N
886	chr6	39536621	39536622	rs4714260	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	6p21.2		rs4714260-C	0.37	4E-28		11.0	z score increase	Affymetrix [9061022] (imputed)	N
886	chr6	39539206	39539207	rs4714261	18846501	Sonuga-Barke EJ	2008-10-07	Am J Med Genet B Neuropsychiatr Genet	Does parental expressed emotion moderate genetic effects in ADHD? An exploration using a genome wide association scan.	Attention deficit hyperactivity disorder symptoms (maternal expressed emotions interaction)	909 European ancestry trios	NA	6p21.2	KIF6	rs4714261-T	0.17	2E-6	(maternal warmth)	0.95	[NR] unit increase	Perlegen [429981]	N
886	chr6	39543084	39543085	rs9471130	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Optic nerve head parameters (multi-trait analysis)	up to 25,180 European ancestry individuals	up to 7,792 Chinese ancestry individuals, 3,280 Malay ancestry individuals, 3,400 Indian ancestry individuals	6p21.2	KIF6	rs9471130-C	0.26	3E-8	(EA)			Affymetrix, Illumina [up to 11901698] (imputed)	N
886	chr6	39543084	39543085	rs9471130	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Optic disc area	24,509 European ancestry individuals	NA	6p21.2	KIF6	rs9471130-C	0.26	2E-6		0.0216	NR mm2 increase	Affymetrix, Illumina [11764957] (imputed)	N
886	chr6	39563862	39563863	rs7738892	31763980	Xiong Z	2019-11-25	Elife	Novel genetic loci affecting facial shape variation in humans.	Facial morphology	10,115 European ancestry individuals	NA	6p21.2	KIF6	rs7738892-T	0.14	1E-8	(right endocanthion-nasion distance)	0.113	NR unit increase	Illumina [7029494] (imputed)	N
886	chr6	39566202	39566203	rs9367021	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (multi-trait analysis)	90,939 European ancestry individuals	NA	6p21.2	KIF6	rs9367021-G	0.59	8E-10		0.0054	NR unit decrease	Affymetrix, Illumina [8002429] (imputed)	N
886	chr6	39566202	39566203	rs9367021	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (adjusted for vertical disc diameter)	67,040 British ancestry individuals	NA	6p21.2	KIF6	rs9367021-G	0.59	2E-6		0.004	NR unit decrease	Affymetrix [at least 8002429] (imputed)	N
887	chr6	39620170	39620171	rs10456474	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	6p21.2	NR	rs10456474-?	NR	9E-6				Illumina [at least 7383741] (imputed)	N
888	chr6	39727832	39727833	rs417096	25108383	Geller F	2014-08-10	Nat Genet	Genome-wide association analyses identify variants in developmental genes associated with hypospadias.	Hypospadias	1,006 European ancestry male child cases, 2,390 European ancestry male child controls, 3,096 European ancestry female child controls	1,972 European ancestry male child cases, 1,401 European ancestry male child controls, 405 European ancestry female child controls, 6 European ancestry child controls	6p21.2	DAAM2	rs417096-G	0.356	7E-25		1.43	[NR]	Illumina [8207076] (imputed)	N
888	chr6	39736401	39736402	rs455674	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	6p21.2	NR	rs455674-?	NR	1E-8				Affymetrix [NR]	N
888	chr6	39747226	39747227	rs1504329	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	6p21.2		rs1504329-T	NR	2E-13		0.0107	[0.0078-0.0136] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
888	chr6	39763505	39763506	rs305851	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	6p21.2	NR	rs305851-?	NR	5E-6				Illumina [at least 7383741] (imputed)	N
888	chr6	39776359	39776360	rs1928191	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	6p21.2		rs1928191-A	0.442688	1E-11		0.0138431	[0.0098-0.0179] unit increase	Illumina [13479295] (imputed)	N
888	chr6	39776359	39776360	rs1928191	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	6p21.2	DAAM2	rs1928191-?	NR	4E-10		0.018160237	[0.012-0.024] unit increase	Illumina [27896057] (imputed)	N
888	chr6	39784364	39784365	rs2395730	20010834	Repapi E	2009-12-13	Nat Genet	Genome-wide association study identifies five loci associated with lung function.	Pulmonary function	20,288 European ancestry individuals	up to 54,276 European ancestry individuals	6p21.2	DAAM2	rs2395730-C	0.42	8E-8	(FEV1/FVC)	0.044	[0.028-0.060] s.d. increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
888	chr6	39790302	39790303	rs9471173	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical thickness (MOSTest)	26,502 European ancestry individuals	NA	6p21.2	AL162431.1, STX6, MR1, IER5	rs9471173-?		4E-9				NR [7428630] (imputed)	N
888	chr6	39799714	39799714	rs75112004	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	6p21.2	DAAM2	rs75112004-G	0.7492	2E-11		0.0148	[0.01-0.019] unit increase	Affymetrix [18391927] (imputed)	N
888	chr6	39827489	39827490	rs2504101	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	6p21.2	DAAM2	rs2504101-A	0.42034	4E-10		0.0116168	[0.008-0.0153] unit increase	NR [13737936] (imputed)	N
888	chr6	39827489	39827490	rs2504101	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	6p21.2		rs2504101-?	NR	3E-15				NR [~ 8900000] (imputed)	N
888	chr6	39827489	39827490	rs2504101	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p21.2		rs2504101-?	NR	3E-12		0.0144852	[0.01-0.019] unit increase	Affymetrix [20259828] (imputed)	N
888	chr6	39838495	39838496	rs2504791	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	6p21.2	NR	rs2504791-T	0.5966560000000001	4E-8		0.0110148	[0.007-0.015] unit increase	Affymetrix [16583148] (imputed)	N
889	chr6	39847278	39847279	rs2504797	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6p21.2		rs2504797-?	NR	3E-13				NR [~ 8900000] (imputed)	N
889	chr6	39857930	39857931	rs3008812	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	6p21.2	NR	rs3008812-T	0.553466	9E-12		0.01259	[0.009-0.0162] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
889	chr6	39863216	39863217	rs3004063	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	6p21.2	DAAM2	rs3004063-A	0.404	4E-8		0.071	[0.046-0.096] unit increase	Affymetrix, Illumina [NR] (imputed)	N
889	chr6	39870012	39870013	rs3004071	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p21.2	NR	rs3004071-C	0.603523	4E-11				Affymetrix, Illumina [24588908] (imputed)	N
889	chr6	39874328	39874329	rs41273140	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6p21.2		rs41273140-?	NR	6E-10				NR [~ 8900000] (imputed)	N
889	chr6	39895262	39895263	rs45487695	32752121	Nedoszytko B	2020-07-31	Int J Mol Sci	Results from a Genome-Wide Association Study (GWAS) in Mastocytosis Reveal New Gene Polymorphisms Associated with WHO Subgroups.	Systemic mastocytosis	93 European ancestry cases, 5,606 European ancestry controls	NA	6p21.2	MOCS1	rs45487695-T	0.00901	5E-8		5.593	[4.89-6.29]	Illumina [281811]	N
889	chr6	39895262	39895263	rs45487695	32752121	Nedoszytko B	2020-07-31	Int J Mol Sci	Results from a Genome-Wide Association Study (GWAS) in Mastocytosis Reveal New Gene Polymorphisms Associated with WHO Subgroups.	Mastocytosis	234 European ancestry cases, 5,606 European ancestry controls	NA	6p21.2	MOCS1	rs45487695-T	0.00901	9E-8		3.893	[3.36-4.43]	Illumina [281811]	N
890	chr6	40001239	40001240	rs74947974	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.2	NR	rs74947974-T	0.01916	7E-10	(MAT2A)	0.01894	NR unit increase	Illumina [1671387] (imputed)	N
890	chr6	40003631	40003632	rs4714291	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Strep throat	52,487 European ancestry cases, 22,017 European ancestry controls	NA	6p21.2	NR	rs4714291-?	NR	1E-6		0.0295	[0.018-0.041] unit increase	Illumina [at least 560000] (imputed)	N
890	chr6	40048654	40048658	rs1345174192	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.2	NR	rs1345174192-G	0.0122	4E-10	(MAT2A)	0.02083	NR unit increase	Illumina [1671387] (imputed)	N
890	chr6	40054471	40054472	rs76931511	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.2	NR	rs76931511-G	0.01742	7E-9	(MAT2A)	0.01875	NR unit increase	Illumina [1671387] (imputed)	N
890	chr6	40105250	40105254	rs1277916192	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.2	NR	rs1277916192-C	0.02962	1E-8	(MAT2A)	0.01648	NR unit increase	Illumina [1671387] (imputed)	N
891	chr6	40212578	40212579	rs10947863	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder	29,475 European ancestry cases, 63,482 European ancestry controls	NA	6p21.2	NR	rs10947863-T	0.746556	2E-6		1.0764263	[1.05-1.11]	Affymetrix [7791636] (imputed)	N
891	chr6	40217929	40217930	rs10947864	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Middle temporal gyrus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	6p21.2	NR	rs10947864-?		2E-6				Illumina [4322238] (imputed)	N
892	chr6	40267935	40267936	rs142550007	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	6p21.2	NR	rs142550007-?	NR	3E-8		0.45839	[0.3-0.62] unit increase	Affymetrix [7794483] (imputed)	N
892	chr6	40328377	40328378	rs2038868	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Chagas cardiomyopathy in Tripanosoma cruzi seropositivity	207 Brazilian ancestry cases, 306 Brazilian ancestry controls	NA	6p21.2	NR	rs2038868-?	NR	9E-6				Affymetrix [5486770] (imputed)	N
892	chr6	40334532	40334533	rs181100653	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IGFBPL1	5,356 Icelandic ancestry individuals	NA	6p21.2		rs181100653-G	0.0114	6E-17		0.168673	[0.13-0.21] unit increase	Illumina [7506463] (imputed)	N
892	chr6	40344458	40344459	rs4714342	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6p21.2	NR	rs4714342-?	NR	8E-13				Affymetrix [~ 8270000] (imputed)	N
892	chr6	40345541	40345542	rs12663230	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6p21.2	NR	rs12663230-?	NR	2E-13				Affymetrix [~ 8270000] (imputed)	N
892	chr6	40347894	40347895	rs2033531	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6p21.2	NR	rs2033531-?	NR	2E-18				Affymetrix [~ 8270000] (imputed)	N
892	chr6	40348652	40348653	rs2033529	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	6p21.2	NA	rs2033529-A	0.7246	2E-16		0.0153	[0.012-0.019] unit decrease	NR [~ 27400000] (imputed)	N
892	chr6	40348652	40348653	rs2033529	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	6p21.2	NR	rs2033529-A	0.7246	2E-16		0.0153	[0.012-0.019] unit decrease	NR [~ 27400000] (imputed)	N
892	chr6	40348652	40348653	rs2033529	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	6p21.2	NA	rs2033529-A	0.7251	2E-29		0.0201	[0.017-0.024] unit decrease	NR [~ 27400000] (imputed)	N
892	chr6	40348652	40348653	rs2033529	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	6p21.2	NR	rs2033529-A	NR	2E-11		0.018	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
892	chr6	40348652	40348653	rs2033529	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	6p21.2	TDRG1, LRFN2	rs2033529-G	0.27	7E-10		0.015	[0.0091-0.0209] unit increase	Illumina [6108953] (imputed)	N
892	chr6	40348652	40348653	rs2033529	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6p21.2	LRFN2	rs2033529-G	0.28269999999999995	2E-8		0.025	[0.016-0.034] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
892	chr6	40348652	40348653	rs2033529	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6p21.2	LRFN2	rs2033529-G	0.27890000000000004	2E-6	(women)	0.0265	[0.016-0.037] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
892	chr6	40348652	40348653	rs2033529	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.2	LRFN2	rs2033529-?	NR	3E-8				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
892	chr6	40348652	40348653	rs2033529	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.2	LRFN2	rs2033529-G	0.28269999999999995	8E-8		0.0214	[0.014-0.029] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
892	chr6	40348652	40348653	rs2033529	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	6p21.2	NR	rs2033529-A	0.710000744534429	4E-10		0.018617788	unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
892	chr6	40348652	40348653	rs2033529	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	6p21.2	TDRG1	rs2033529-G	0.293	1E-8	(EA)	0.019	[0.013-0.025] kg/m2 increase	Affymetrix, Illumina [2550021]	N
892	chr6	40348652	40348653	rs2033529	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	6p21.2	TDRG1	rs2033529-G	0.291	3E-6	(EA, women)	0.02	[0.012-0.029] kg/m2 increase	Affymetrix, Illumina [2550021]	N
892	chr6	40348652	40348653	rs2033529	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	6p21.2	TDRG1	rs2033529-G	0.289	1E-8		0.018	[0.012-0.025] kg/m2 increase	Affymetrix, Illumina [2550021]	N
892	chr6	40348652	40348653	rs2033529	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p21.2	LRFN2	rs2033529-A	0.7053	6E-6	(EA, women)	0.0219	[0.012-0.031] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
892	chr6	40348652	40348653	rs2033529	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p21.2	LRFN2	rs2033529-A	0.7053	2E-8	(EA)	0.0209	[0.014-0.028] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
892	chr6	40349365	40349366	rs6904571	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	6p21.2	LRFN2	rs6904571-T	0.2588	1E-8		0.002	[0.0014-0.0026] unit increase	Affymetrix [15275733] (imputed)	N
892	chr6	40351865	40351866	rs115885457	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TREM2	5,367 Icelandic ancestry individuals	NA	6p21.2		rs115885457-C	0.01132	5E-20		0.795352	[0.63-0.97] unit decrease	Illumina [7506463] (imputed)	N
892	chr6	40354539	40354540	rs772843886	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	6p21.2	LRFN2	rs772843886-G	0.999229	2E-9		0.199184	[0.13-0.26] unit increase	NR [13737936] (imputed)	N
892	chr6	40362022	40362023	rs9471333	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Sex hormone-binding globulin levels	389,354 European ancestry individuals	NA	6p21.2		rs9471333-C	0.45	9E-7		0.008	nmol/L decrease	NR [NR] (imputed)	N
892	chr6	40362022	40362023	rs9471333	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	6p21.2		rs9471333-C	0.45	2E-16				NR [NR] (imputed)	N
892	chr6	40362022	40362023	rs9471333	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	6p21.2		rs9471333-C	0.45	7E-22		0.014	% increase	NR [NR] (imputed)	N
892	chr6	40362022	40362023	rs9471333	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	6p21.2	NR	rs9471333-?		2E-9		0.0131038	[0.0089-0.0174] unit increase	Affymetrix [19400418] (imputed)	N
892	chr6	40362022	40362023	rs9471333	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6p21.2	NR	rs9471333-?	NR	2E-31				Affymetrix [~ 8270000] (imputed)	N
892	chr6	40362022	40362023	rs9471333	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	6p21.2	NR	rs9471333-C	0.45	1E-22		0.02439312	[0.02-0.029] unit increase	Affymetrix [10549349] (imputed)	N
892	chr6	40362022	40362023	rs9471333	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	6p21.2		rs9471333-?	NR	1E-30				NR [~ 8900000] (imputed)	N
892	chr6	40364324	40364325	rs17619780	30263053	Deng X	2018-09-17	BMC Proc	Genome-wide association study for multiple phenotype analysis.	Triglyceride levels	821 individuals	NA	6p21.2	NA	rs17619780-?		8E-8				Affymetrix [587358]	N
892	chr6	40364324	40364325	rs17619780	30263053	Deng X	2018-09-17	BMC Proc	Genome-wide association study for multiple phenotype analysis.	HDL cholesterol and triglyceride levels (pleiotropy)	821 individuals	NA	6p21.2	NA	rs17619780-?	NR	5E-6				Affymetrix [587358]	N
892	chr6	40369080	40369081	rs34045288	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	6p21.2		rs34045288-T	NR	5E-22		0.0167	[0.013-0.02] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
892	chr6	40369080	40369081	rs34045288	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	6p21.2	NA	rs34045288-T	0.3303	3E-28		0.0224	[0.018-0.026] unit increase	NR [~ 27400000] (imputed)	N
892	chr6	40369194	40369195	rs731575	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	6p21.2	Intergenic	rs731575-A	0.7029	7E-9	(MTAG)	0.0114	[0.0075-0.0153] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
893	chr6	40371917	40371918	rs1579557	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	6p21.2	NA	rs1579557-T	0.288	2E-28		0.0206	[0.017-0.024] unit increase	NR [~ 27400000] (imputed)	N
893	chr6	40374287	40374288	rs2436760	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	6p21.2	Intergenic	rs2436760-T	0.9741	3E-10	(MTAG)	0.0326	[0.022-0.043] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
893	chr6	40374287	40374288	rs2436760	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6p21.2		rs2436760-T	0.9717	5E-8		0.0232	[0.015-0.031] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
893	chr6	40374287	40374288	rs2436760	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6p21.2	Intergenic	rs2436760-T	0.9717	5E-10	(MTAG)	0.0246	[0.017-0.032] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
893	chr6	40375939	40375940	rs75108536	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	6p21.2		rs75108536-C	0.84	5E-11		0.01	[0.0061-0.0139] unit increase	NR [NR] (imputed)	N
893	chr6	40375939	40375940	rs75108536	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	6p21.2	LRFN2	rs75108536-T	0.156	1E-10		0.0105	[0.0074-0.0136] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
893	chr6	40375939	40375940	rs75108536	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	6p21.2	LRFN2	rs75108536-T	0.1607	2E-9		0.015921356	[0.011-0.021] unit decrease	Illumina [9339358] (imputed)	N
893	chr6	40380680	40380681	rs985146	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	6p21.2	Intergenic	rs985146-T	0.8342	5E-8	(MTAG)	0.0168	[0.011-0.023] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
893	chr6	40382543	40382544	rs7759114	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6p21.2	NR	rs7759114-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
893	chr6	40382710	40382711	rs2916260	26950853	Dehghan A	2016-03-07	PLoS One	Genome-Wide Association Study for Incident Myocardial Infarction and Coronary Heart Disease in Prospective Cohort Studies: The CHARGE Consortium.	Incident coronary heart disease	2406 European ancestry cases, 21,618 European ancestry controls	3059 European ancestry cases, 28,087 European ancestry controls	6p21.2	LRFN2	rs2916260-T	NR	2E-6		1.15	[1.09 - 1.22]	Affymetrix, Illumina [2543842] (imputed)	N
893	chr6	40383815	40383816	rs148347825	28736931	Rotroff DM	2017-07-24	Clin Pharmacol Ther	Genetic Variants in HSD17B3, SMAD3, and IPO11 Impact Circulating Lipids in Response to Fenofibrate in Individuals With Type 2 Diabetes.	Triglyceride change in response to fenofibrate in statin-treated type 2 diabetes	781 European ancestry individuals, 138 African American ancestry individuals, 345 unknown ancestry individuals		6p21.2	LRFN2	rs148347825-?	NR	2E-8	(AA)	0.166	unit increase	Affymetrix, Illumina [8129838] (imputed)	N
893	chr6	40392368	40392369	rs13196792	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6p21.2	NR	rs13196792-?	NR	3E-11				Affymetrix [~ 8270000] (imputed)	N
893	chr6	40405326	40405327	rs34058206	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6p21.2	NR	rs34058206-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
893	chr6	40409242	40409243	rs34298980	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	6p21.2		rs34298980-C	NR	3E-8		0.0378	[0.024-0.051] unit decrease	Affymetrix, Illumina [25845091] (imputed)	N
893	chr6	40409242	40409243	rs34298980	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	6p21.2		rs34298980-C	NR	3E-9		0.0136	[0.0091-0.0181] unit decrease	Affymetrix, Illumina [20529698] (imputed)	N
893	chr6	40409242	40409243	rs34298980	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	6p21.2		rs34298980-C	NR	5E-26		0.0214	[0.017-0.025] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
893	chr6	40409242	40409243	rs34298980	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	6p21.2	NR	rs34298980-C	0.4995	4E-9		0.0381	[0.025-0.051] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
893	chr6	40409242	40409243	rs34298980	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	6p21.2	NR	rs34298980-C	0.4713	1E-10		0.0354	[0.025-0.046] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
893	chr6	40409242	40409243	rs34298980	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		6p21.2	LRFN2	rs34298980-T	0.491242	4E-20		0.0132574	[0.01-0.016] unit increase	Affymetrix [12370749]	N
893	chr6	40409242	40409243	rs34298980	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	6p21.2	LRFN2	rs34298980-T	0.4967	9E-10		1.04	[1.03-1.05]	Affymetrix, Illumina [~ 27000000] (imputed)	N
893	chr6	40440499	40440500	rs9296335	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6p21.2	LRFN2	rs9296335-A	0.033	8E-6	(HDL )	0.03	[NR] mg/dL increase	Illumina [899892]	N
893	chr6	40440499	40440500	rs9296335	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6p21.2	LRFN2	rs9296335-A	0.033	3E-6	(TG/HDLC )	0.03	[NR] mmol/L increase	Illumina [899892]	N
893	chr6	40442796	40442797	rs146998480	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-to-hip ratio adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,049 whole genome sequenced individuals, 29,518 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,001 Mylopotamos (founder/genetic isolate) individuals, 867 Pomak (founder/genetic isolate) individuals	206,045 European ancestry individuals	6p21.2	LRFN2	rs146998480-A	0.9979	6E-6		0.6524	[0.37-0.94] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
893	chr6	40442796	40442797	rs146998480	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-hip ratio	1,254 whole genome sequenced European ancestry individuals, 3,071 whole genome sequenced individuals, 29,723 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,053 Mylopotamos (founder/genetic isolate) individuals, 879 Pomak (founder/genetic isolate) individuals	206,053 European ancestry individuals	6p21.2	LRFN2	rs146998480-A	0.9979	5E-6		0.6538	[0.37-0.94] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
894	chr6	40536127	40536128	rs2494938	23103227	Jin G	2012-10-25	Am J Hum Genet	Genetic variants at 6p21.1 and 7p15.3 are associated with risk of multiple cancers in Han Chinese.	Multiple cancers (lung cancer, gastric cancer, and squamous cell carcinoma)	2,331 Han Chinese ancestry lung cancer cases, 1,006 Han Chinese ancestry non-cardia gastric cancer cases, 2,031 Han Chinese ancestry esophageal squamous-cell carcinoma cases, 4,006 Han Chinese ancestry controls	2,665 Han Chinese ancestry lung cancer cases, 3,330 Han Chinese ancestry non-cardia gastric cancer cases, 3,006 Han Chinese ancestry esophageal squamous-cell carcinoma cases, 11,436 Han Chinese ancestry controls	6p21.1	LRFN2	rs2494938-A	0.23	5E-9	(NCGC)	1.18	[1.12-1.25]	Affymetrix [NR]	N
894	chr6	40536127	40536128	rs2494938	23103227	Jin G	2012-10-25	Am J Hum Genet	Genetic variants at 6p21.1 and 7p15.3 are associated with risk of multiple cancers in Han Chinese.	Multiple cancers (lung cancer, gastric cancer, and squamous cell carcinoma)	2,331 Han Chinese ancestry lung cancer cases, 1,006 Han Chinese ancestry non-cardia gastric cancer cases, 2,031 Han Chinese ancestry esophageal squamous-cell carcinoma cases, 4,006 Han Chinese ancestry controls	2,665 Han Chinese ancestry lung cancer cases, 3,330 Han Chinese ancestry non-cardia gastric cancer cases, 3,006 Han Chinese ancestry esophageal squamous-cell carcinoma cases, 11,436 Han Chinese ancestry controls	6p21.1	LRFN2	rs2494938-A	0.23	2E-6	(Lung Cancer)	1.15	[1.08-1.22]	Affymetrix [NR]	N
894	chr6	40536127	40536128	rs2494938	23103227	Jin G	2012-10-25	Am J Hum Genet	Genetic variants at 6p21.1 and 7p15.3 are associated with risk of multiple cancers in Han Chinese.	Multiple cancers (lung cancer, gastric cancer, and squamous cell carcinoma)	2,331 Han Chinese ancestry lung cancer cases, 1,006 Han Chinese ancestry non-cardia gastric cancer cases, 2,031 Han Chinese ancestry esophageal squamous-cell carcinoma cases, 4,006 Han Chinese ancestry controls	2,665 Han Chinese ancestry lung cancer cases, 3,330 Han Chinese ancestry non-cardia gastric cancer cases, 3,006 Han Chinese ancestry esophageal squamous-cell carcinoma cases, 11,436 Han Chinese ancestry controls	6p21.1	LRFN2	rs2494938-A	0.23	1E-12	(All Cancers)	1.15	[1.10-1.19]	Affymetrix [NR]	N
895	chr6	40646558	40646559	rs12527410	34737425	Mansour Aly D	2021-11-04	Nat Genet	Genome-wide association analyses highlight etiological differences underlying newly defined subtypes of diabetes.	Mild age-related type 2 diabetes	2,861 Scandinavian ancestry cases, 2,744 Scandinavian ancestry controls	NA	6p21.1	KIF6	rs12527410-C	0.295008	3E-6		0.805	[0.735 - 0.882]	Illumina [5397657] (imputed)	N
896	chr6	40774394	40774395	rs185692311	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	6p21.1	Intergenic	rs185692311-C	0.999	5E-7	(AA)	0.535	unit increase	Illumina [NR] (imputed)	N
896	chr6	40802260	40802261	rs10484761	21642993	Wu C	2011-06-05	Nat Genet	Genome-wide association study identifies three new susceptibility loci for esophageal squamous-cell carcinoma in Chinese populations.	Esophageal cancer	2,031 Han Chinese ancestry cases, 2,044 Han Chinese ancestry controls	3,986 Han Chinese ancestry cases, 4,157 Han Chinese ancestry controls	6p21.1	UNC5CL	rs10484761-G	0.09	7E-12		1.33	[1.23-1.45]	Affymetrix [666141]	N
896	chr6	40822299	40822300	rs113871023	32131869	Arbeeva L	2020-03-04	J Foot Ankle Res	Genome-wide meta-analysis identified novel variant associated with hallux valgus in Caucasians.	Hallux valgus	2,314 European ancestry cases, 3,611 European ancestry controls	NA	6p21.1	ACTG1P9	rs113871023-A	0.99	5E-6		7.37	[3.14-17.32]	Affymetrix, Illumina [up to 7729175] (imputed)	N
896	chr6	40828284	40828285	rs6917512	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	6p21.1	NR	rs6917512-C	NR	2E-6		1.0526316	[NR]	Illumina [7158791] (imputed)	N
897	chr6	40904029	40904030	rs12664332	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	6p21.1	NR	rs12664332-?	NR	4E-7		4446.5327	NR unit decrease	Illumina [2379855]	N
897	chr6	40941618	40941619	rs71573331	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Alanine aminotransferase levels in excessive alcohol consumption	951 individuals	NA	6p21.1	NR	rs71573331-?	NR	2E-6		0.0374	[0.022-0.053] unit increase	Illumina [~ 7800000] (imputed)	N
897	chr6	40942195	40942196	rs187370608	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Illnesses of mother: Alzheimer's disease/dementia (UKB data field 20110_10)	36,155 European ancestry cases, 381,650 European ancestry controls	NA	6p21.1		rs187370608-A	0.002212	2E-10		0.55	[0.38-0.72] unit increase	NR [11842647] (imputed)	N
897	chr6	40942195	40942196	rs187370608	34493870	Wightman DP	2021-09-07	Nat Genet	A genome-wide association study with 1,126,563 individuals identifies new risk loci for Alzheimer's disease.	Late-onset Alzheimer's disease	90,338 cases, 1,036,225 controls	NA	6p21.1		rs187370608-?	NR	1E-25				Illumina [NR] (imputed)	N
897	chr6	40942195	40942196	rs187370608	33589840	Schwartzentruber J	2021-02-15	Nat Genet	Genome-wide meta-analysis, fine-mapping and integrative prioritization implicate new Alzheimer's disease risk genes.	Alzheimer's disease or family history of Alzheimer's disease	472,868 European ancestry individuals	NA	6p21.1	UNC5CL	rs187370608-?	NR	2E-23		0.796876	unit increase	NR [10687077] (imputed)	N
897	chr6	40942195	40942196	rs187370608	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Family history of Alzheimer's disease	47,793 European ancestry cases, 328,320 European ancestry controls	NA	6p21.1	TREM2	rs187370608-A	NR	2E-16		8.261	NR z-score increase	Affymetrix [10847151] (imputed)	N
897	chr6	40942195	40942196	rs187370608	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	6p21.1	TREM2	rs187370608-A	0.002	1E-16		8.26	NR z-unit increase	Affymetrix, Illumina [up to 10847151] (imputed)	N
897	chr6	40984261	40984262	rs9381024	33002439	Jin G	2020-10-01	Lancet Oncol	Genetic risk, incident gastric cancer, and healthy lifestyle: a meta-analysis of genome-wide association studies and prospective cohort study.	Gastric cancer	10,254 Han Chinese ancestry cases, 10,914 Han Chinese ancestry controls	NA	6p21.1	NR	rs9381024-T	0.23	1E-7		1.14	NR	Affymetrix, Illumina [6957974] (imputed)	N
897	chr6	40998166	40998167	rs742493	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	6p21.1		rs742493-C	NR	5E-8		0.0163	[0.01-0.022] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
897	chr6	40998166	40998167	rs742493	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	C-C motif chemokine 20 levels	21,758 European ancestry individuals	9,173 individuals	6p21.1		rs742493-T	0.88	1E-17		0.1423	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
897	chr6	40998166	40998167	rs742493	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	6p21.1		rs742493-?	NR	1E-8		0.0183528	[0.012-0.025] unit increase	NR [6912294] (imputed)	N
897	chr6	40998166	40998167	rs742493	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	6p21.1	UNC5CL	rs742493-T	0.8935	8E-11		0.035	[0.024-0.046] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
897	chr6	40998166	40998167	rs742493	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	6p21.1	UNC5CL	rs742493-T	0.8808	1E-10		0.039012	[0.027-0.051] mg/dL increase	Affymetrix, Illumina [8217339] (imputed)	N
897	chr6	40998166	40998167	rs742493	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	6p21.1	NR	rs742493-T	0.1071	6E-6	(women)	0.0356	[0.02-0.051] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
897	chr6	40998166	40998167	rs742493	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	6p21.1	NR	rs742493-T	0.1027	2E-6	(men)	0.0426	[0.025-0.06] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
897	chr6	41005501	41005502	rs2294693	26129866	Hu N	2015-06-30	Gut	Genome-wide association study of gastric adenocarcinoma in Asia: a comparison of associations between cardia and non-cardia tumours.	Non-cardia gastric cancer	1,027 East Asian ancestry cases, 2,708 East Asian ancestry controls	3,663  East Asian ancestry cases, 7,548  East Asian ancestry controls	6p21.1	UNC5CL, TSPO2	rs2294693-C	0.238	3E-8		1.18	[1.12-1.26]	Illumina [556896]	N
897	chr6	41005501	41005502	rs2294693	26129866	Hu N	2015-06-30	Gut	Genome-wide association study of gastric adenocarcinoma in Asia: a comparison of associations between cardia and non-cardia tumours.	Gastric cancer	2,350 East Asian ancestry cases, 2,708 East Asian ancestry controls	7,408  East Asian ancestry cases, 7,548  East Asian ancestry controls	6p21.1	UNC5CL, TSPO2	rs2294693-C	0.238	7E-8		1.14	[1.09-1.20]	Illumina [556896]	N
897	chr6	41012404	41012405	rs4714422	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	6p21.1	NR	rs4714422-G	0.2387	5E-8		0.0293	[0.019-0.04] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
897	chr6	41014308	41014309	rs9462670	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		6p21.1	OARD1	rs9462670-G	0.769356	7E-9		0.00941609	[0.0062-0.0126] unit decrease	Affymetrix [12370749]	N
897	chr6	41014308	41014309	rs9462670	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6p21.1	NR	rs9462670-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
897	chr6	41014308	41014309	rs9462670	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	6p21.1		rs9462670-?	NR	7E-8				NR [~ 8900000] (imputed)	N
897	chr6	41020921	41020922	rs2073016	26222057	Pander J	2015-07-29	PLoS One	Genome Wide Association Study for Predictors of Progression Free Survival in Patients on Capecitabine, Oxaliplatin, Bevacizumab and Cetuximab in First-Line Therapy of Metastatic Colorectal Cancer.	Progression free survival in metastatic colorectal cancer (CAPOX-B vs CAPOX-B plus cetuximab)	256 cases treated with CAPOX-B plus cetuximab, 264 cases treated with CAPOX-B	NA	6p21.1	intergenic	rs2073016-T	NR	4E-6		1.62	[1.31-2]	Illumina [2850023] (imputed)	N
898	chr6	41033999	41034000	rs114812713	33589840	Schwartzentruber J	2021-02-15	Nat Genet	Genome-wide meta-analysis, fine-mapping and integrative prioritization implicate new Alzheimer's disease risk genes.	Alzheimer's disease or family history of Alzheimer's disease	472,868 European ancestry individuals	NA	6p21.1	UNC5CL	rs114812713-?	NR	1E-12		0.208485	unit increase	NR [10687077] (imputed)	N
898	chr6	41033999	41034000	rs114812713	30820047	Kunkle BW	2019-02-28	Nat Genet	Genetic meta-analysis of diagnosed Alzheimer's disease identifies new risk loci and implicates A?, tau, immunity and lipid processing.	Alzheimer's disease (late onset)	21,982 European ancestry cases, 41,944 European ancestry controls	up to 13,292 European ancestry cases, up to 17,219 European ancestry controls	6p21.1	OARD1	rs114812713-C	0.03	2E-13		1.32	[1.22-1.42]	Affymetrix, Illumina [11480632] (imputed)	N
898	chr6	41033999	41034000	rs114812713	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.1	TREM2	rs114812713-G	0.95546875	3E-10	(TREM2, 5635_66_3)	0.3598696	[0.25-0.47] unit increase	Illumina [> 1000000] (imputed)	N
898	chr6	41054261	41054261	rs35163651	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	6p21.1	OARD1, NFYA	rs35163651-GT	0.1332	2E-10		0.0343308	[0.024-0.045] unit decrease	Affymetrix [~ 2500000] (imputed)	N
898	chr6	41058967	41058968	rs9296354	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TREML1	5,362 Icelandic ancestry individuals	NA	6p21.1		rs9296354-A	0.113	3E-12		0.209943	[0.15-0.27] unit decrease	Illumina [7506463] (imputed)	N
898	chr6	41059168	41059169	rs10080924	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6p21.1	NFYA, OARD1	rs10080924-A	0.132908	2E-13		0.023632485	[0.017-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
898	chr6	41095816	41095817	rs62396317	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.1	TREML1	rs62396317-A	0.8775	3E-8	(TREML1, 9329_28_3)	0.21118605	[0.14-0.29] unit increase	Illumina [> 1000000] (imputed)	N
898	chr6	41127971	41127972	rs7748513	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	C-reactive protein levels	8,349 African American individuals, 15,912 Hispanic/Latino individuals, 1,811 Asian ancestry individuals, 1,777 Native Hawaiian ancestry individuals, 574 Native American ancestry individuals, 97 individuals	NA	6p21.1	NR	rs7748513-?	NR	4E-8		0.06384379	[0.041-0.087] unit increase	Illumina [30861016] (imputed)	N
898	chr6	41127971	41127972	rs7748513	22939635	Reiner AP	2012-08-28	Am J Hum Genet	Genome-wide association and population genetic analysis of C-reactive protein in African American and Hispanic American women.	C-reactive protein	8,280 African American female individuals, 3,548 Hispanic female individuals	3,787 African American female individuals, 3,548 Hispanic female individuals, 5,656 European ancestry individuals	6p21.1	TREM2	rs7748513-G	0.432	1E-10	(AA women)			Affymetrix [up to 2203609] (imputed)	N
898	chr6	41129206	41129207	rs143332484	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	6p21.1	TREM2	rs143332484-T	0.009954	3E-8		5.5406914	NR z-unit increase	Affymetrix, Illumina [up to 10847151] (imputed)	N
898	chr6	41129206	41129207	rs143332484	28714976	Sims R	2017-09-01	Nat Genet	Rare coding variants in PLCG2, ABI3, and TREM2 implicate microglial-mediated innate immunity in Alzheimer's disease.	Alzheimer's disease (late onset)	up to 16,097 European ancestry cases, up to 18,077 European ancestry controls	up to 20,693 European ancestry cases, up to 30,266 European ancestry controls	6p21.1	TREM2	rs143332484-T	NR	2E-14		1.6665556	[1.46-1.90]	Illumina [241551]	N
898	chr6	41129251	41129252	rs75932628	33637690	He L	2021-02-26	Transl Psychiatry	Exome-wide age-of-onset analysis reveals exonic variants in ERN1 and SPPL2C associated with Alzheimer's disease.	Alzheimer's disease (age of onset)	10,216 European ancestry individuals	9,261 European ancestry individuals	6p21.1		rs75932628-?	NR	8E-17		2.76		NR [110450]	N
898	chr6	41129251	41129252	rs75932628	28714976	Sims R	2017-09-01	Nat Genet	Rare coding variants in PLCG2, ABI3, and TREM2 implicate microglial-mediated innate immunity in Alzheimer's disease.	Alzheimer's disease (late onset)	up to 16,097 European ancestry cases, up to 18,077 European ancestry controls	up to 20,693 European ancestry cases, up to 30,266 European ancestry controls	6p21.1	TREM2	rs75932628-T	NR	5E-24		2.4557426	[2.06-2.92]	Illumina [241551]	N
898	chr6	41129251	41129252	rs75932628	23150908	Jonsson T	2012-11-14	N Engl J Med	Variant of TREM2 associated with the risk of Alzheimer's disease.	Alzheimer's disease	3,550 European ancestry cases, 8,888 European ancestry controls	694 European ancestry cases, 4,375 European ancestry controls, 1,343 cases, 5,352 controls	6p21.1	TREM2	rs75932628-T	0.0063	2E-12		2.9	[2.16-3.91]	NR [NR]	N
898	chr6	41131727	41131728	rs2234247	29618737	Napier MD	2018-04-04	Sci Rep	Genome-wide association study and meta-analysis identify loci associated with ventricular and supraventricular ectopy.	Supraventricular ectopy	1,618 European ancestry cases, 20,899 European ancestry controls, 652 African ancestry cases, 8,622 African ancestry controls, 354 Hispanic/Latino ancestry cases, 10,831 Hispanic/Latino ancestry controls	NA	6p21.1	TREM2	rs2234247-G	NR	1E-6		1.5873016	[1.32-1.92]	Affymetrix, Illumina [NR] (imputed)	N
898	chr6	41133805	41133806	rs7748777	32141789	Theriault S	2019-10-15	Circ Genom Precis Med	Genetic Association Analyses Highlight IL6, ALPL, and NAV1 As 3 New Susceptibility Genes Underlying Calcific Aortic Valve Stenosis.	Calcific aortic valve stenosis	5,115 European ancestry cases, 354,072 European ancestry controls	NA	6p21.1	TREM2-TREML2	rs7748777-A	0.448	6E-6		1.13	[1.08-1.18]	Affymetrix, Illumina [8000000] (imputed)	N
898	chr6	41138048	41138049	rs12202176	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6p21.1	TREML1	rs12202176-?	NR	6E-6	(leucine)	0.70535505	[0.4-1.01] unit decrease	Affymetrix [at least 2500000] (imputed)	N
898	chr6	41138048	41138049	rs12202176	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6p21.1	TREML1	rs12202176-?	NR	1E-6	(isoleucine)	0.76705813	[0.46-1.08] unit decrease	Affymetrix [at least 2500000] (imputed)	N
898	chr6	41154649	41154650	rs9381040	24162737	Lambert JC	2013-10-27	Nat Genet	Meta-analysis of 74,046 individuals identifies 11 new susceptibility loci for Alzheimer's disease.	Alzheimer's disease (late onset)	17,008 European ancestry cases, 37,154 European ancestry controls	8,572 European ancestry cases, 11,312 European ancestry controls	6p21.1	TREML2	rs9381040-C	0.703	6E-7		1.0753	[1.04-1.1]	Illumina [7055881] (imputed)	N
899	chr6	41165818	41165819	rs13207171	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p21.1	TREML2	rs13207171-T	0.134379	2E-15		0.025741495	[0.019-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
899	chr6	41165818	41165819	rs13207171	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p21.1	NR	rs13207171-T	0.135984	3E-16				Affymetrix, Illumina [24649327] (imputed)	N
899	chr6	41165818	41165819	rs13207171	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	6p21.1		rs13207171-?	NR	1E-14				NR [~ 8900000] (imputed)	N
899	chr6	41165818	41165819	rs13207171	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.1	TREML2	rs13207171-C	0.86875	2E-233	(TREML2, 5736_1_3)	1.0863768	[1.03-1.15] unit decrease	Illumina [> 1000000] (imputed)	N
899	chr6	41165839	41165840	rs6902672	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	6p21.1	TREML2	rs6902672-C	0.207498	2E-20		0.025469635	[0.02-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
899	chr6	41166148	41166149	rs62396355	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	6p21.1		rs62396355-G	NR	4E-9		0.0179	[0.012-0.024] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
899	chr6	41166150	41166151	rs61998254	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.1		rs61998254-A	0.866	9E-10				Affymetrix [10369434] (imputed)	N
899	chr6	41166150	41166151	rs61998254	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6p21.1	TREML2	rs61998254-G	0.13412	7E-11		0.021310292	[0.015-0.028] unit increase	Affymetrix [93095623] (imputed)	N
899	chr6	41166150	41166151	rs61998254	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p21.1	NR	rs61998254-G	0.123159	2E-21				Affymetrix, Illumina [23467995] (imputed)	N
899	chr6	41166150	41166151	rs61998254	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	6p21.1	NR	rs61998254-G	0.132592	4E-24		0.028788	[0.023-0.034] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
899	chr6	41166150	41166151	rs61998254	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.1	TREML2	rs61998254-G	0.127	5E-86	(Trem-like transcript 2 protein, TREML2.5736.1.3)	0.69	[0.61-0.77] unit increase	Affymetrix [10572788] (imputed)	N
899	chr6	41167762	41167763	rs62396356	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	6p21.1	TREML2	rs62396356-G	0.1355	1E-10		0.03357624	[0.023-0.044] unit decrease	Affymetrix [~ 2500000] (imputed)	N
899	chr6	41168978	41168979	rs113052081	31049640	Chen J	2019-05-02	Diabetologia	Genome-wide association study of type 2 diabetes in Africa.	Type 2 diabetes	2,633 African ancestry cases, 1,714 African ancestry controls	NA	6p21.1	TREML2	rs113052081-T	0.986	2E-6		2.55	[1.74-3.72]	Affymetrix, Illumina [12148595] (imputed)	N
899	chr6	41169678	41169679	rs17643398	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	6p21.1	TREML2	rs17643398-T	0.1047	5E-6		0.0566	[0.032-0.081] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
899	chr6	41169678	41169679	rs17643398	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	6p21.1	TREML2	rs17643398-T	0.1047	5E-6		0.0566	[0.032-0.081] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
899	chr6	41175550	41175554	rs151084487	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.1	NR	rs151084487-C	0.884	4E-20	(Triggering receptor expressed on myeloid cells 1, TREM1.9266.1.3)	0.36	[0.28-0.44] unit increase	Affymetrix [10572788] (imputed)	N
899	chr6	41184225	41184226	rs56104198	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		TREML3P	rs56104198-?	NR	3E-12	(male)	1.31224	[NR] unit decrease	Affymetrix [NR] (imputed)	N
899	chr6	41184225	41184226	rs56104198	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		TREML3P	rs56104198-?	NR	2E-11		0.900985	[NR] unit decrease	Affymetrix [NR] (imputed)	N
899	chr6	41185429	41185430	rs1968871	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TREM1	5,367 Icelandic ancestry individuals	NA	6p21.1		rs1968871-T	0.1654	4E-16		0.192342	[0.15-0.24] unit decrease	Illumina [7506463] (imputed)	N
899	chr6	41205689	41205690	rs9296359	29381699	Ravenhall M	2018-01-30	PLoS Genet	Novel genetic polymorphisms associated with severe malaria and under selective pressure in North-eastern Tanzania.	Severe malaria (adjusted for sickle cell variant rs334)	449 Tanzanian ancestry cases, 465 Tanzanian ancestry controls	NA	6p21.1	TREML4	rs9296359-?	NR	4E-7	(Heterozygous)		[NR]	Illumina [15200000] (imputed)	N
899	chr6	41205689	41205690	rs9296359	29381699	Ravenhall M	2018-01-30	PLoS Genet	Novel genetic polymorphisms associated with severe malaria and under selective pressure in North-eastern Tanzania.	Severe malaria	449 Tanzanian ancestry cases, 465 Tanzanian ancestry controls	NA	6p21.1	TREML4	rs9296359-?	NR	1E-7	(Heterozygous)	4.087	[NR]	Illumina [15200000] (imputed)	N
899	chr6	41216333	41216334	rs3857580	33589840	Schwartzentruber J	2021-02-15	Nat Genet	Genome-wide meta-analysis, fine-mapping and integrative prioritization implicate new Alzheimer's disease risk genes.	Alzheimer's disease or family history of Alzheimer's disease	472,868 European ancestry individuals	NA	6p21.1	UNC5CL	rs3857580-?	NR	1E-7		0.0503548	unit decrease	NR [10687077] (imputed)	N
899	chr6	41222925	41222926	rs1872245	33232274	Mohammadnejad A	2020-11-24	Aging (Albany NY)	Generalized correlation coefficient for genome-wide association analysis of cognitive ability in twins.	Cognitive function (generalized correlation coefficient)	278 Chinese ancestry dizygotic twins	NA	6p21.1	NR	rs1872245-?	NR	9E-7			[NR]	Illumina [5432814] (imputed)	N
899	chr6	41224654	41224655	rs71558736	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TREM1	5,367 Icelandic ancestry individuals	NA	6p21.1		rs71558736-C	0.03182	3E-6		0.23364	[0.14-0.33] unit decrease	Illumina [7506463] (imputed)	N
899	chr6	41232551	41232552	rs74851542	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	6p21.1	NR	rs74851542-?	NR	2E-7	(Latino)	1.1461	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
899	chr6	41238861	41238862	rs34542207	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		TREM1	rs34542207-?	NR	2E-11	(male)	1.0961	[NR] unit decrease	Affymetrix [NR] (imputed)	N
899	chr6	41238861	41238862	rs34542207	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		TREM1	rs34542207-?	NR	2E-10		0.69093	[NR] unit decrease	Affymetrix [NR] (imputed)	N
899	chr6	41241402	41241403	rs17701319	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6p21.1	TREML4	rs17701319-?	NR	2E-6	(sucrose)	0.4139843	[0.24-0.59] unit increase	Affymetrix [at least 2500000] (imputed)	N
899	chr6	41245844	41245844	rs139121778	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.1	TREM1	rs139121778-AT	0.294	4E-88	(Triggering receptor expressed on myeloid cells 1, TREM1.9266.1.3)	0.52	[0.46-0.58] unit increase	Affymetrix [10572788] (imputed)	N
899	chr6	41254627	41254628	rs13210325	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.1	NR	rs13210325-T	0.087	3E-46	(Triggering receptor expressed on myeloid cells 1, TREM1.9266.1.3)	0.62	[0.54-0.7] unit decrease	Affymetrix [10572788] (imputed)	N
899	chr6	41254740	41254741	rs3789204	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TREM1	5,367 Icelandic ancestry individuals	NA	6p21.1		rs3789204-T	0.3102	4E-85		0.355568	[0.32-0.39] unit increase	Illumina [7506463] (imputed)	N
899	chr6	41254740	41254741	rs3789204	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.1	TREM1	rs3789204-G	0.69296875	1E-54	(TREM1, 9266_1_3)	0.3743275	[0.33-0.42] unit decrease	Illumina [> 1000000] (imputed)	N
899	chr6	41257459	41257460	rs148354923	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p21.1	NR	rs148354923-?	NR	7E-6		4.496	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
899	chr6	41261224	41261225	rs6926036	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TREM1	5,367 Icelandic ancestry individuals	NA	6p21.1		rs6926036-T	0.07125	8E-71		0.590918	[0.53-0.66] unit decrease	Illumina [7506463] (imputed)	N
899	chr6	41267076	41267077	rs12662130	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TREM1	5,367 Icelandic ancestry individuals	NA	6p21.1		rs12662130-T	0.111	2E-16		0.230169	[0.18-0.29] unit decrease	Illumina [7506463] (imputed)	N
899	chr6	41286007	41286008	rs67592608	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Lateral orbital frontal cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	6p21.1	NR	rs67592608-?		3E-6				Illumina [4322238] (imputed)	N
900	chr6	41301026	41301027	rs9357354	29151059	Delgado DA	2017-11-18	J Med Genet	Genome-wide association study of telomere length among South Asians identifies a second RTEL1 association signal.	Telomere length	5,075 Bangladeshi ancestry individuals	NA	6p21.1	NCR2	rs9357354-C	0.17	1E-6		0.13	[0.071-0.189] unit increase	Illumina [~ 6300000] (imputed)	N
900	chr6	41303804	41303805	rs9471576	21116278	Furney SJ	2010-11-30	Mol Psychiatry	Genome-wide association with MRI atrophy measures as a quantitative trait locus for Alzheimer's disease.	Total ventricular volume	424 European ancestry mild cognitive impairment cases, 236 European ancestry Alzheimer's disease cases, 279 European ancestry controls	NA	6p21.1	NCR2	rs9471576-?	NR	2E-6		0.009	[NR] unit increase	Illumina [478011]	N
900	chr6	41336100	41336101	rs6922617	23562540	Cruchaga C	2013-04-04	Neuron	GWAS of cerebrospinal fluid tau levels identifies risk variants for Alzheimer's disease.	Alzheimer's disease biomarkers	591 European ancestry cases, 687 European ancestry controls		6p21.1	TREM, NCR2	rs6922617-A	NR	4E-8	(ptau)	0.094	[NR] unit decrease	Illumina [5815690] (imputed)	N
900	chr6	41351529	41351530	rs140632992	28203683	Heit JA	2017-02-16	Thromb Haemost	Identification of unique venous thromboembolism-susceptibility variants in African-Americans.	Venous thromboembolism adjusted for sickle cell variant rs77121243-T	393 African American cases, 4,941 African American controls.	NR	6p21.1	LOC100505711	rs140632992-T	0.011	1E-6		4.101	[2.31-7.28]	Affymetrix, Illumina [14074516] (imputed)	N
900	chr6	41377991	41377992	rs4714457	33445220	Li Y	2021-01-14	Am J Transplant	Donor genetic variants as risk factors for thrombosis after liver transplantation: A genome-wide association study.	Thrombosis in response to liver transplant	42 European ancestry pediatric cases, 268 European ancestry pediatric controls	64 European ancestry adult cases, 711 European ancestry adult controls	6p21.1	NR	rs4714457-C	0.219	5E-6		2.1262	NR	Illumina [5393447] (imputed)	N
900	chr6	41379314	41379315	rs7762544	23459936	Divaris K	2013-03-04	Hum Mol Genet	Exploring the genetic basis of chronic periodontitis: a genome-wide association study.	Periodontitis	4,504 European ancestry individuals	656 European ancestry and African American individuals	6p21.1	NCR2	rs7762544-?	NR	8E-8	(Moderate CPd)	1.4	[1.24-1.59]	Affymetrix [2135236] (imputed)	N
900	chr6	41415736	41415737	rs912881	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	6p21.1	NR	rs912881-?	NR	5E-6				Illumina [at least 7383741] (imputed)	N
901	chr6	41428949	41428950	rs2477826	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	6p21.1	NR	rs2477826-T	0.29813	1E-8		0.0191041	[0.013-0.026] unit decrease	NR [19129689] (imputed)	N
901	chr6	41429942	41429943	rs2496632	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	6p21.1		rs2496632-?	NR	4E-8				NR [~ 8900000] (imputed)	N
901	chr6	41433214	41433215	rs9357362	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	6p21.1		rs9357362-?	NR	4E-15				NR [~ 8900000] (imputed)	N
901	chr6	41459332	41459333	rs56332525	34620984	Skuladottir AT	2021-10-07	Commun Biol	A genome-wide meta-analysis uncovers six sequence variants conferring risk of vertigo.	Vertigo	48,072 European ancestry cases, 894,541 European ancestry controls	NA	6p21.1		rs56332525-C	NR	5E-6		0.95285		Affymetrix, Illumina [62056310] (imputed)	N
901	chr6	41471388	41471389	rs13212930	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6p21.1		rs13212930-?	NR	1E-28				NR [~ 8900000] (imputed)	N
901	chr6	41487356	41487357	rs36025606	29703844	van Zuydam NR	2018-04-27	Diabetes	A Genome-Wide Association Study of Diabetic Kidney Disease in Subjects With Type 2 Diabetes.	Diabetic kidney disease in type 2 diabetes (ESRD vs. no ESRD)	371 European ancestry cases with end-stage renal disease, 4,471 European ancestry cases without end-stage renal disease	1,640 European ancestry cases with end-stage renal disease, 7,803 European ancestry cases without end-stage renal disease, 877 Asian cases with end-stage renal disease, 4,510 Asian cases without end-stage renal disease, 20 Chinese ancestry cases with end-stage renal disease, 398 Chinese ancestry cases without end-stage renal disease	6p21.1	NR	rs36025606-?		9E-6		1.47	[1.14-1.88]	Affymetrix, Illumina [up to 9343778] (imputed)	N
901	chr6	41487356	41487357	rs36025606	29703844	van Zuydam NR	2018-04-27	Diabetes	A Genome-Wide Association Study of Diabetic Kidney Disease in Subjects With Type 2 Diabetes.	Diabetic kidney disease in type 2 diabetes (ESRD vs. no ESRD)	371 European ancestry cases with end-stage renal disease, 4,471 European ancestry cases without end-stage renal disease	1,640 European ancestry cases with end-stage renal disease, 7,803 European ancestry cases without end-stage renal disease, 877 Asian cases with end-stage renal disease, 4,510 Asian cases without end-stage renal disease, 20 Chinese ancestry cases with end-stage renal disease, 398 Chinese ancestry cases without end-stage renal disease	6p21.1	NR	rs36025606-?		4E-6	(EA)	1.48	[1.15-1.90]	Affymetrix, Illumina [up to 9343778] (imputed)	N
901	chr6	41490051	41490052	rs1977357	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lung cancer	4,444 East Asian ancestry cases, 174,282 East Asian ancestry controls	NA	6p21.1		rs1977357-A	0.698971916	5E-9		0.14552294	[0.097-0.194] unit decrease	Illumina [13429980] (imputed)	N
901	chr6	41490487	41490488	rs2495239	27501781	Shiraishi K	2016-08-09	Nat Commun	Association of variations in HLA class II and other loci with susceptibility to EGFR-mutated lung adenocarcinoma.	EGFR mutation-positive lung adenocarcinoma	663 Japanese ancestry cases, 4,367 Japanese ancestry controls	2,510 Japanese ancestry cases, 10,791 Japanese ancestry controls	6p21.1	FOXP4	rs2495239-A	0.382	4E-9		1.19	[1.12-1.26]	Illumina [NR] (imputed)	N
901	chr6	41493411	41493412	rs7741164	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Lung adenocarcinoma	15,581 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	6p21.1	NR	rs7741164-A	NR	4E-12		1.17	[1.12-1.22]	NR [NR] (imputed)	N
901	chr6	41493411	41493412	rs7741164	31326317	Dai J	2019-07-17	Lancet Respir Med	Identification of risk loci and a polygenic risk score for lung cancer: a large-scale prospective cohort study in Chinese populations.	Non-small cell lung cancer	13,327 Chinese ancestry cases, 13,793 European ancestry cases, 13,328 Chinese ancestry controls, 14,027 European ancestry controls	NA	6p21.1	NR	rs7741164-A	0.34	4E-12	(East Asian)	1.16	[1.11-1.21]	Illumina [~ 11000000] (imputed)	N
901	chr6	41493411	41493412	rs7741164	31326317	Dai J	2019-07-17	Lancet Respir Med	Identification of risk loci and a polygenic risk score for lung cancer: a large-scale prospective cohort study in Chinese populations.	Lung adenocarcinoma	8,762 Chinese ancestry cases, 6,819 European ancestry cases, 13,328 Chinese ancestry controls, 14,027 European ancestry controls	NA	6p21.1	NR	rs7741164-A	0.34	7E-14	(East Asian)	1.19	[1.14-1.25]	Illumina [~ 11000000] (imputed)	N
901	chr6	41493411	41493412	rs7741164	26732429	Wang Z	2016-01-04	Hum Mol Genet	Meta-analysis of genome-wide association studies identifies multiple lung cancer susceptibility loci in never-smoking Asian women.	Lung cancer	6,877 East Asian ancestry never smoker cases, 6,277 East Asian ancestry never smoker controls	5,878 East Asian ancestry never smoker cases, 7,046 East Asian ancestry never smoker controls	6p21.1	DQ141194	rs7741164-A	0.309	6E-13		1.17	[1.12-1.22]	Affymetrix, Illumina [7564751] (imputed)	N
901	chr6	41493411	41493412	rs7741164	26732429	Wang Z	2016-01-04	Hum Mol Genet	Meta-analysis of genome-wide association studies identifies multiple lung cancer susceptibility loci in never-smoking Asian women.	Adenocarcinoma	Up to 5,744 Chinese ancestry cases, up to 4,817 Chinese ancestry controls, up to 1,133 Japanese ancestry cases, up to 1,460 Japanese ancestry controls	Up to 4,647 Chinese ancestry cases, up to 4,099 Chinese ancestry controls, up to 1,231 Japanese ancestry cases, up to 2,947 Japanese ancestry controls	6p21.1	DQ141194	rs7741164-A	0.308	1E-12		1.18	[1.13-1.24]	Affymetrix, Illumina [7564751] (imputed)	N
901	chr6	41497034	41497035	rs1853837	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Non-small cell lung cancer	27,120 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	6p21.1	NR	rs1853837-A	NR	1E-10		1.12	[1.08-1.15]	NR [NR] (imputed)	N
901	chr6	41497034	41497035	rs1853837	31326317	Dai J	2019-07-17	Lancet Respir Med	Identification of risk loci and a polygenic risk score for lung cancer: a large-scale prospective cohort study in Chinese populations.	Non-small cell lung cancer	13,327 Chinese ancestry cases, 13,793 European ancestry cases, 13,328 Chinese ancestry controls, 14,027 European ancestry controls	NA	6p21.1	FOXP4	rs1853837-A	0.258	1E-10		1.12	[1.08-1.15]	Illumina [~ 11000000] (imputed)	N
901	chr6	41502682	41502683	rs1886814	34237774	COVID-19 Host Genetics Initiative	2021-07-08	Nature	Mapping the human genetic architecture of COVID-19.	SARS-CoV-2 infection	2,544 African ancestry cases, 31,176 African ancestry controls, 700 Middle Eastern ancestry cases, 13,360 Middle Eastern ancestry controls, 1,495 East Asian ancestry cases, 15,499 East Asian ancestry controls, 38,984 European ancestry cases, 1,644,784 European ancestry controls, 1,688 South Asian ancestry cases, 42,016 South Asian ancestry controls, 4,151 Hispanic or Latin American cases, 23,371 Hispanic or Latin American controls	NA	6p21.1		rs1886814-C	0.04664	2E-8		1.1057236	[1.0673687203891646-1.1454568121291355]	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
901	chr6	41502682	41502683	rs1886814	34237774	COVID-19 Host Genetics Initiative	2021-07-08	Nature	Mapping the human genetic architecture of COVID-19.	COVID-19 (hospitalized vs population)	790 African ancestry cases, 20,582 African ancestry controls, 60 Middle Eastern ancestry cases, 13,360 Middle Eastern ancestry controls, 1,414 East Asian ancestry cases, 15,499 East Asian ancestry controls, 9,986 European ancestry cases, 1,877,672 European ancestry controls, 186 South Asian ancestry cases, 43,280 South Asian ancestry controls, 1,678 Hispanic or Latin American cases, 100,316 Hispanic or Latin American controls	NA	6p21.1		rs1886814-C	0.04242	1E-9		1.2618514	[1.1708908156456612-1.35987823139442]	Affymetrix, Illumina [NR] (imputed)	N
901	chr6	41517456	41517457	rs12206814	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	6p21.1	FOXP4	rs12206814-C	0.4869	1E-8		1.0257254		Affymetrix [11880941] (imputed)	N
901	chr6	41519429	41519430	rs13207588	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	6p21.1	FOXP4	rs13207588-A	0.228508119216374	7E-9	(G_Parabacteroides_RNT)	0.179778	[0.12-0.24] unit decrease	Illumina [7711310] (imputed)	N
901	chr6	41521109	41521110	rs4714481	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.1		rs4714481-C	NR	1E-8		1.0905125	[1.06-1.12]	Affymetrix [7846216] (imputed)	N
901	chr6	41527697	41527698	rs9381080	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Prostate cancer	11,599 European ancestry cases, 199,628 European ancestry controls, 5,672 East Asian ancestry cases, 84,660 East Asian ancestry controls	NA	6p21.1		rs9381080-C	NR	5E-21		0.1195	[0.095-0.144] unit increase	Affymetrix, Illumina [25775424] (imputed)	N
901	chr6	41527894	41527895	rs9369289	33597122	Verbitsky M	2021-02-17	J Am Soc Nephrol	Copy Number Variant Analysis and Genome-wide Association Study Identify Loci with Large Effect for Vesicoureteral Reflux.	Vesicoureteral reflux	1,395 European ancestry cases, 5,366 European ancestry controls	NA	6p21.1	NR	rs9369289-A	0.1114	1E-7	(recessive)	3.912983	[2.3566662159769-6.49707450868337]	Affymetrix, Illumina [6131010] (imputed)	N
901	chr6	41536426	41536427	rs1983891	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Prostate cancer	5,672 East Asian ancestry cases, 84,660 East Asian ancestry controls	NA	6p21.1		rs1983891-T	0.414210961	4E-11		0.1388509	[0.098-0.18] unit increase	Illumina [13406905] (imputed)	N
901	chr6	41536426	41536427	rs1983891	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Prostate cancer	7,438 White British ancestry cases, 118,206 White British ancestry controls	NA	6p21.1		rs1983891-?	NR	4E-11		1.13092	[1.09-1.17]	NR [680312]	N
901	chr6	41536426	41536427	rs1983891	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	6p21.1	FOXP4	rs1983891-T	0.276862	2E-10		0.015526118	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
901	chr6	41536426	41536427	rs1983891	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Prostate cancer	5,408 Japanese ancestry cases, 103,939 Japanese ancestry controls	NA	6p21.1		rs1983891-T	0.415811418	8E-11		1.1443394	[1.09870727-1.191866879]	Illumina [8919992] (imputed)	N
901	chr6	41536426	41536427	rs1983891	31562322	Takata R	2019-09-27	Nat Commun	12 new susceptibility loci for prostate cancer identified by genome-wide association study in Japanese population.	Prostate cancer	5,088 Japanese ancestry cases, 10,682 Japanese ancestry controls	4,818 Japanese ancestry cases, 73,261 Japanese ancestry controls	6p21.1	FOXP4	rs1983891-T	0.419	5E-8		1.1454753	NR	Illumina [7742602] (imputed)	N
901	chr6	41536426	41536427	rs1983891	20676098	Takata R	2010-08-01	Nat Genet	Genome-wide association study identifies five new susceptibility loci for prostate cancer in the Japanese population.	Prostate cancer	1,583 Japanese ancestry cases, 3,386 Japanese ancestry controls	3,001 Japanese ancestry cases, 5,415 Japanese ancestry controls	6p21.1	FOXP4	rs1983891-T	0.41	8E-8		1.15	[1.09-1.21]	Illumina [510687]	N
901	chr6	41536586	41536587	rs4714485	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 91,972 European ancestry controls	6,852 European ancestry cases, 193,117 European ancestry controls	6p21.1	NR	rs4714485-G	0.276019085	2E-9		1.1165469	[1.08-1.16]	Affymetrix, Illumina [20400945] (imputed)	N
901	chr6	41536586	41536587	rs4714485	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	6p21.1	NR	rs4714485-G	NR	2E-41		1.099	[1.08-1.11]	Affymetrix, Illumina [29235255] (imputed)	N
901	chr6	41536586	41536587	rs4714485	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	8,611 East Asian ancestry cases, 18,809 East Asian ancestry controls	NA	6p21.1	NR	rs4714485-G	0.378	3E-12		1.146	[1.10-1.19]	Affymetrix, Illumina [10186136] (imputed)	N
901	chr6	41536586	41536587	rs4714485	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	10,368 African ancestry cases, 10,986 African ancestry controls	NA	6p21.1	NR	rs4714485-G	0.47	8E-7		1.106	[1.06-1.15]	Affymetrix, Illumina [18877980] (imputed)	N
901	chr6	41537343	41537344	rs7761231	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6p21.1	FOXP4	rs7761231-A	0.108725	1E-9		0.021548256	[0.015-0.029] unit increase	Affymetrix [93095623] (imputed)	N
902	chr6	41550466	41550467	rs5875762	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting insulin	16,386 Hispanic individuals	NA	6p21.1	FOXP4	rs5875762-C	0.4041	2E-6		0.0299	[0.016-0.044] unit decrease	Affymetrix, Illumina [26195808] (imputed)	N
902	chr6	41552039	41552040	rs912883	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6p21.1		rs912883-T	0.6781	6E-9		0.0087	[0.0058-0.0116] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
902	chr6	41552039	41552040	rs912883	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6p21.1	Intergenic	rs912883-T	0.6781	5E-10	(MTAG)	0.0087	[0.006-0.0114] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
902	chr6	41558357	41558358	rs3800283	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	6p21.1	Intergenic	rs3800283-A	0.6787	4E-8	(MTAG)	0.0097	[0.0062-0.0132] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
902	chr6	41558357	41558358	rs3800283	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6p21.1		rs3800283-A	0.6802	3E-8	(conditional-joint)	0.0083	[0.0054-0.0112] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
902	chr6	41569402	41569403	rs112165107	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in diabetes mellitus	153 Korean ancestry cases, 5,161 Korean ancestry controls	NA	6p21.1		rs112165107-A	0.01113	6E-6		4.22	[2.258-7.886]	Affymetrix [7975321] (imputed)	N
902	chr6	41570349	41570350	rs9381084	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	6p21.1		rs9381084-?	NR	2E-9				NR [~ 8900000] (imputed)	N
902	chr6	41583575	41583576	rs2842638	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	6p21.1		rs2842638-?	NR	3E-10				NR [~ 8900000] (imputed)	N
902	chr6	41598523	41598524	rs16894865	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6p21.1	FOXP4	rs16894865-?	NR	2E-6	(creatine)	7.7136736	[4.55-10.88] unit increase	Affymetrix [at least 2500000] (imputed)	N
902	chr6	41607583	41607584	rs75852965	31557306	Wang RS	2019-09-26	Clin Pharmacol Ther	Pharmacogenomics and Placebo Response in a Randomized Clinical Trial in Asthma.	Subjective response to placebo treatment in childhood asthma (change in cough/wheeze)	250 European ancestry children	NA	6p21.1	MDFI	rs75852965-C	0.15	4E-6		1.21	NR unit decrease	Illumina [NR] (imputed)	N
902	chr6	41612973	41612974	rs2842659	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	6p21.1		rs2842659-?	NR	6E-14				NR [~ 8900000] (imputed)	N
902	chr6	41622096	41622097	rs45483501	25261932	Cerhan JR	2014-09-28	Nat Genet	Genome-wide association study identifies multiple susceptibility loci for diffuse large B cell lymphoma.	Diffuse large B cell lymphoma	3,857 European ancestry cases, 7,666 European ancestry controls	1,359 European ancestry cases, 4,557 European ancestry controls	6p21.1	NR	rs45483501-C	0.875	8E-6		1.22	[1.11-1.33]	Illumina [8363971] (imputed)	N
902	chr6	41623032	41623033	rs2143678	21779381	Schurks M	2011-07-14	PLoS One	Genetic determinants of cardiovascular events among women with migraine: a genome-wide association study.	Cardiovascular disease risk factors	5,122 European ancestry female migrain cases	NA	6p21.1	MDF1	rs2143678-?	NR	4E-7	(migraineurs with aura - major CVD)	3.05	[1.98-4.96]	Illumina [339596]	N
902	chr6	41629763	41629764	rs62396716	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Grapefruit juice consumption	85,852 European ancestry individuals	39,924 European ancestry individuals	6p21.1	MDFI	rs62396716-C	0.8788	9E-7		0.0025	[0.0015-0.0035] unit increase	Affymetrix [~ 7740000] (imputed)	N
902	chr6	41632628	41632629	rs9394822	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6p21.1		rs9394822-?	NR	2E-8				NR [~ 8900000] (imputed)	N
902	chr6	41647272	41647273	rs62396719	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	6p21.1		rs62396719-?	NR	2E-25				NR [~ 8900000] (imputed)	N
902	chr6	41650735	41650736	rs2842643	18839057	Lesch KP	2008-10-07	J Neural Transm (Vienna)	Molecular genetics of adult ADHD: converging evidence from genome-wide association and extended pedigree linkage studies.	Attention deficit hyperactivity disorder	343 European ancestry cases, 250 European ancestry controls, 54 controls	NA	6p21.1	TFEB	rs2842643-?	NR	3E-6				Affymetrix [504219]	N
902	chr6	41658888	41658889	rs1015149	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	6p21.1	TFEB	rs1015149-T	0.47	2E-12		0.45	[0.33-0.57] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
902	chr6	41658888	41658889	rs1015149	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	6p21.1	TFEB	rs1015149-T	0.4688	2E-11		0.4463	[0.32-0.58] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
902	chr6	41664346	41664347	rs148003968	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		6p21.1	TFEB	rs148003968-A	0.003	5E-6	(liability model)	0.81	[0.46-1.16] unit increase	NR [19725427] (imputed)	N
902	chr6	41666291	41666292	rs34203781	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6p21.1	NR	rs34203781-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
902	chr6	41667505	41667506	rs28360642	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	6p21.1	NR	rs28360642-A	0.839983	9E-48		0.0163796	[0.014-0.019] unit increase	Affymetrix [16582909] (imputed)	N
902	chr6	41667505	41667506	rs28360642	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	6p21.1	NR	rs28360642-A	0.83948	6E-36		0.0204808	[0.017-0.024] unit increase	Affymetrix [16585854] (imputed)	N
902	chr6	41667505	41667506	rs28360642	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	6p21.1	NR	rs28360642-A	0.839983	3E-37		0.0162387	[0.014-0.019] unit increase	Affymetrix [16582965] (imputed)	N
902	chr6	41667505	41667506	rs28360642	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	6p21.1	NR	rs28360642-A	0.83948	3E-24		0.0198505	[0.016-0.024] unit increase	Affymetrix [16585866] (imputed)	N
902	chr6	41670353	41670367	rs138307665	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	6p21.1		rs138307665-T	NR	2E-8		0.0256	[0.017-0.034] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
902	chr6	41670607	41670608	rs9369305	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	6p21.1	NR	rs9369305-T	NR	1E-9		0.0189	[0.013-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
902	chr6	41670607	41670608	rs9369305	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	6p21.1	NR	rs9369305-T	NR	1E-9		0.0189	[0.013-0.025] unit increase	Affymetrix [9000000] (imputed)	N
902	chr6	41671676	41671677	rs4714508	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	6p21.1		rs4714508-G	NR	3E-11		0.015	[0.01-0.02] unit increase	Affymetrix, Illumina [20529698] (imputed)	N
902	chr6	41671676	41671677	rs4714508	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	6p21.1	NR	rs4714508-G	NR	5E-15		0.0198	[0.015-0.025] unit increase	Affymetrix [9000000] (imputed)	N
902	chr6	41671676	41671677	rs4714508	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p21.1	TFEB	rs4714508-G	0.345674	2E-12		0.016319338	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
902	chr6	41671676	41671677	rs4714508	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	6p21.1	NR	rs4714508-A	0.655219	2E-15		0.0166316	[0.013-0.021] unit decrease	NR [NR]	N
902	chr6	41671676	41671677	rs4714508	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	6p21.1		rs4714508-?	NR	1E-11				NR [~ 8900000] (imputed)	N
902	chr6	41672768	41672769	rs6933790	31089142	Law PJ	2019-05-14	Nat Commun	Association analyses identify 31 new risk loci for colorectal cancer susceptibility.	Colorectal cancer	31,197 European ancestry cases, 61,770 European ancestry controls	NA	6p21.1	NR	rs6933790-T	0.83	4E-10		1.1	[1.07-1.14]	Affymetrix, Illumina [> 10000000] (imputed)	N
902	chr6	41673579	41673580	rs35985639	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Creatinine levels	142,097 Japanese ancestry individuals	NA	6p21.1	TFEB	rs35985639-?	NR	1E-8		0.02412	[0.016-0.032] unit decrease novel	Illumina [6108953] (imputed)	N
902	chr6	41674099	41674100	rs78470916	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	6p21.1	NR	rs78470916-T	NR	6E-10		0.034	[0.023-0.045] unit decrease	Affymetrix [9000000] (imputed)	N
902	chr6	41678020	41678021	rs59821259	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	150,266 East Asian ancestry individuals	NA	6p21.1		rs59821259-T	0.269218	5E-10		0.0201466	[0.014-0.026] unit decrease	Illumina [13478778] (imputed)	N
902	chr6	41679690	41679691	rs62396733	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	6p21.1	NR	rs62396733-T	0.13711700000000004	6E-9		0.0213341	[0.014-0.029] unit increase	Affymetrix [16585745] (imputed)	N
902	chr6	41680665	41680666	rs9471632	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	6p21.1		rs9471632-C	NR	4E-25		0.0169	[0.014-0.02] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
903	chr6	41681621	41681622	rs2057069	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	6p21.1	TFEB	rs2057069-T	0.4152	4E-8		5.491	NR z score decrease	Illumina [26237160] (imputed)	N
903	chr6	41684389	41684390	rs9349200	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	6p21.1		rs9349200-?	NR	3E-185				NR [~ 8900000] (imputed)	N
903	chr6	41684389	41684390	rs9349200	28394258	Wild PS	2017-04-10	J Clin Invest	Large-scale genome-wide analysis identifies genetic variants associated with cardiac structure and function.	Left ventricle wall thickness	30,201 European ancestry individuals	NA	6p21.1	NR	rs9349200-A	0.8491	7E-6		0.0128	[0.0073-0.0183] unit decrease	Affymetrix, Illumina [at least 283291] (imputed)	N
903	chr6	41690822	41690823	rs13200335	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	6p21.1	TFEB	rs13200335-A	0.4626	3E-20		0.0024	[0.0018-0.003] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
903	chr6	41690822	41690823	rs13200335	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	6p21.1	TFEB	rs13200335-A	0.4154	1E-15		0.0024	[0.0018-0.003] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
903	chr6	41690822	41690823	rs13200335	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	6p21.1	TFEB	rs13200335-A	0.4626	6E-6		0.0032	[0.0018-0.0046] unit decrease	Affymetrix, Illumina [8176554] (imputed)	N
903	chr6	41692811	41692812	rs4711689	30529582	Lu Y	2018-12-06	Gastroenterology	Large-scale Genome-wide Association Study of East Asians Identifies Loci Associated With Risk for Colorectal Cancer.	Colorectal cancer	22,775 East Asian ancestry cases, 47,731 East Asian ancestry controls	NA	6p21.1	TFEB	rs4711689-A	0.85	6E-6		1.09	[1.05-1.13]	Affymetrix, Illumina [up to 10700000] (imputed)	N
903	chr6	41692811	41692812	rs4711689	26965516	Zeng C	2016-03-08	Gastroenterology	Identification of Susceptibility Loci and Genes for Colorectal Cancer Risk.	Colorectal cancer	4,508 East Asian ancestry cases, 16,588 East Asian ancestry controls	11,044 East Asian ancestry cases, 18,036 East Asian ancestry controls	6p21.1	TFEB	rs4711689-A	0.85	4E-8		1.11	[1.07-1.15]	Affymetrix, Illumina [~ 4000000] (imputed)	N
903	chr6	41694772	41694773	rs34846419	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	6p21.1	NR	rs34846419-A	NR	1E-11		0.0324	[0.023-0.042] unit decrease	Affymetrix [9000000] (imputed)	N
903	chr6	41702978	41702979	rs11759908	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in non-diabetics	152,624 European ancestry individuals, 36,369 African American individuals	NA	6p21.1	TFEB	rs11759908-T	0.409	4E-8		0.317	[0.2-0.43] unit decrease	Affymetrix [NR] (imputed)	N
903	chr6	41702978	41702979	rs11759908	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	6p21.1	TFEB	rs11759908-T	0.413	5E-11		0.0024	[0.0018-0.003] unit decrease	Affymetrix [NR] (imputed)	N
903	chr6	41703040	41703041	rs6939861	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	6p21.1	NR	rs6939861-G	0.738223	3E-9		0.00864192	[0.0057-0.0115] unit increase	Affymetrix [16578495] (imputed)	N
903	chr6	41703040	41703041	rs6939861	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	6p21.1	NR	rs6939861-G	0.738205	2E-12		0.0250047	[0.018-0.032] unit increase	Affymetrix [16577313] (imputed)	N
903	chr6	41703040	41703041	rs6939861	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	6p21.1	NR	rs6939861-G	0.738132	3E-16		0.0107467	[0.0081-0.0134] unit increase	Affymetrix [16582621] (imputed)	N
903	chr6	41703040	41703041	rs6939861	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	6p21.1	NR	rs6939861-G	0.738132	1E-15		0.0112806	[0.0085-0.0141] unit increase	Affymetrix [16582614] (imputed)	N
903	chr6	41706519	41706520	rs150869154	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6p21.1	NR	rs150869154-?	NR	4E-9				Affymetrix [~ 8270000] (imputed)	N
903	chr6	41706834	41706835	rs76361738	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	6p21.1	PGC	rs76361738-A	0.065504	8E-11		0.029073793	[0.02-0.038] unit increase	Affymetrix [93095623] (imputed)	N
903	chr6	41708663	41708664	rs1316979	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6p21.1	NR	rs1316979-?	NR	8E-15				Affymetrix [~ 8270000] (imputed)	N
903	chr6	41708663	41708664	rs1316979	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	6p21.1		rs1316979-?	NR	9E-14				NR [~ 8900000] (imputed)	N
903	chr6	41708663	41708664	rs1316979	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	6p21.1	NR	rs1316979-T	0.06	7E-16		0.029	[0.022-0.036] unit increase	Affymetrix [2446094] (imputed)	N
903	chr6	41708663	41708664	rs1316979	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	6p21.1	NR	rs1316979-T	0.06	5E-8				Affymetrix [2446094] (imputed)	N
903	chr6	41708663	41708664	rs1316979	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	6p21.1	NR	rs1316979-T	0.065	3E-16		0.029	[0.022-0.036] unit increase	NR [~ 27400000] (imputed)	N
903	chr6	41719223	41719224	rs9349201	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	6p21.1		rs9349201-?	NR	1E-10				NR [~ 8900000] (imputed)	N
903	chr6	41727739	41727740	rs73422097	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	6p21.1	PGC	rs73422097-A	0.698774	3E-12		0.0106191	[0.0076-0.0136] unit decrease	Affymetrix [12370749]	N
903	chr6	41729405	41729406	rs12661968	28502801	Law MH	2017-05-11	J Invest Dermatol	Genome-Wide Association Shows that Pigmentation Genes Play a Role in Skin Aging.	Skin aging (microtopography measurement)	5,087 individuals	NA	6p21.1	USP49	rs12661968-T		2E-6		0.1005	[NR] unit decrease	Illumina [at least 233546] (imputed)	N
903	chr6	41744947	41744948	rs3761781	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	6p21.1		rs3761781-?	NR	1E-300				NR [~ 8900000] (imputed)	N
903	chr6	41748351	41748352	rs12193797	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	6p21.1	NR	rs12193797-G	0.133657	1E-8		0.0565473	[0.037-0.076] unit decrease	Affymetrix [17914406] (imputed)	N
903	chr6	41748351	41748352	rs12193797	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6p21.1	NR	rs12193797-?	NR	6E-9				Affymetrix [~ 8270000] (imputed)	N
903	chr6	41748351	41748352	rs12193797	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	6p21.1		rs12193797-?	NR	2E-9				NR [~ 8900000] (imputed)	N
903	chr6	41748351	41748352	rs12193797	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	6p21.1	NA	rs12193797-A	0.8704	3E-9		0.0168	[0.011-0.022] unit increase	NR [~ 27400000] (imputed)	N
903	chr6	41750821	41750822	rs6925777	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (age at voice breaking MTAG)	205,354 European ancestry individuals	NA	6p21.1		rs6925777-T	NR	5E-12		0.02242034	[0.016-0.029] years increase	NR [7400000] (imputed)	N
903	chr6	41754369	41754370	rs10947987	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	6p21.1	NR	rs10947987-C	0.5569	4E-8		1.0330578	[1.02-1.04]	Affymetrix, Illumina [NR] (imputed)	N
903	chr6	41755707	41755708	rs41273794	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.1	PRICKLE4, TOMM6	rs41273794-T	NR	5E-12		0.0234015	[0.017-0.03] unit increase	Affymetrix [323123] (imputed)	N
903	chr6	41760989	41760990	rs6938966	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Sunburns	approximately 344,000 European ancestry individuals	NA	6p21.1		rs6938966-?	NR	8E-16				NR [~ 8900000] (imputed)	N
903	chr6	41773575	41773576	rs2185798	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	6p21.1	USP49	rs2185798-C	0.479255	1E-12		0.015739229	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
903	chr6	41783248	41783249	rs9471669	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	6p21.1	USP49	rs9471669-G	0.768303	3E-16		0.02257558	[0.017-0.028] unit increase	Affymetrix [93095623] (imputed)	N
903	chr6	41792544	41792545	rs12661667	30846698	Dashti HS	2019-03-07	Nat Commun	Genome-wide association study identifies genetic loci for self-reported habitual sleep duration supported by accelerometer-derived estimates.	Sleep duration (short sleep)	106,192  European ancestry cases, 305,742 European ancestry controls	47,180  adults, 10,554 children or adolescents	6p21.1	USP49	rs12661667-T	NR	3E-8		1.028		NR [14661600] (imputed)	N
903	chr6	41796897	41796898	rs191667458	26626624	Stuart PE	2015-11-28	Am J Hum Genet	Genome-wide Association Analysis of Psoriatic Arthritis and Cutaneous Psoriasis Reveals Differences in Their Genetic Architecture.	Cutaneous psoriasis	1,363 European ancestry cases, 4,934 European ancestry controls	up to 2,969 European ancestry cases, up to European ancestry 14,384 controls	6p21.1	USP49	rs191667458-T	0.0106	8E-7		2.18	NR	Illumina [11532644] (imputed)	N
903	chr6	41796969	41796970	rs6899876	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	9,298 Hispanic or Latin American individuals	NA	6p21.1	NR	rs6899876-T	0.799881	9E-12		0.12908	[0.092-0.166] SD units increase	Affymetrix, Illumina [26810224] (imputed)	N
903	chr6	41796969	41796970	rs6899876	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p21.1	NR	rs6899876-C	0.265487	8E-571				Affymetrix, Illumina [20825802] (imputed)	N
903	chr6	41809800	41809801	rs9367113	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.1	USP49	rs9367113-T	NR	4E-9		0.0182228	[0.012-0.024] unit increase	Affymetrix [321016] (imputed)	N
904	chr6	41815191	41815192	rs9471676	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p21.1	NR	rs9471676-T	0.24063	5E-342				Affymetrix, Illumina [24332387] (imputed)	N
904	chr6	41821136	41821137	rs9381096	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6p21.1	MED20	rs9381096-?	NR	8E-6	(TAG 58:10)	0.17887563	[0.1-0.26] unit increase	Affymetrix [at least 2500000] (imputed)	N
904	chr6	41821136	41821137	rs9381096	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6p21.1	MED20	rs9381096-?	NR	1E-6	(TAG 52:3)	0.1969642	[0.12-0.28] unit increase	Affymetrix [at least 2500000] (imputed)	N
904	chr6	41831142	41831143	rs2254479	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	6p21.1		rs2254479-?	NR	9E-15				NR [~ 8900000] (imputed)	N
904	chr6	41831672	41831672	rs142129233	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	6p21.1		rs142129233-AT	NR	3E-8		0.0149	[0.0096-0.0202] unit increase	Affymetrix, Illumina [20536605] (imputed)	N
904	chr6	41836814	41836815	rs62396757	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	6p21.1	NR	rs62396757-G	0.181968	2E-643		0.137757	[0.13-0.14] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
904	chr6	41837086	41837087	rs566752434	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6p21.1	RP5-973N23.4, USP49	rs566752434-T	7.62999999999958E-4	8E-18		0.38633245	[0.3-0.47] unit decrease	Affymetrix [93095623] (imputed)	N
904	chr6	41837086	41837087	rs566752434	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	6p21.1	RP5-973N23.4, USP49	rs566752434-T	7.61000000000012E-4	3E-14		0.34525427	[0.26-0.43] unit decrease	Affymetrix [93095623] (imputed)	N
904	chr6	41851361	41851361	rs113215092	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6p21.1	USP49	rs113215092-AAAAT	0.195534	4E-14		0.023901753	[0.018-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
904	chr6	41851361	41851361	rs113215092	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6p21.1	USP49	rs113215092-AAAAT	0.195489	2E-9		0.045252092	[0.03-0.06] unit increase	Affymetrix [93095623] (imputed)	N
904	chr6	41852186	41852187	rs2395792	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	6p21.1	USP49	rs2395792-G	0.9556692	7E-26		0.096926	[0.087-0.107] unit increase	Affymetrix [93095623] (imputed)	N
904	chr6	41852186	41852187	rs2395792	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	6p21.1	USP49	rs2395792-G	0.954	2E-24		0.08895023	[0.072-0.106] unit increase	Affymetrix [~ 2500000] (imputed)	N
904	chr6	41852615	41852616	rs1319012	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.1	USP49	rs1319012-T	NR	2E-11		0.0369063	[0.026-0.048] unit increase	Affymetrix [321016] (imputed)	N
904	chr6	41852615	41852616	rs1319012	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.1	USP49	rs1319012-T	NR	3E-15		0.0471479	[0.035-0.059] unit increase	Affymetrix [323123] (imputed)	N
904	chr6	41852615	41852616	rs1319012	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	6p21.1	USP49	rs1319012-A	0.9258866	1E-21		0.045125064	[0.036-0.054] unit decrease	Affymetrix [93095623] (imputed)	N
904	chr6	41852615	41852616	rs1319012	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	6p21.1	USP49	rs1319012-A	0.9258502	8E-53		0.07542534	[0.066-0.085] unit increase	Affymetrix [93095623] (imputed)	N
904	chr6	41852615	41852616	rs1319012	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	6p21.1	USP49	rs1319012-A	0.9259113	1E-48		0.066245064	[0.057-0.075] unit increase	Affymetrix [93095623] (imputed)	N
904	chr6	41852615	41852616	rs1319012	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6p21.1		rs1319012-?	NR	9E-71				NR [~ 8900000] (imputed)	N
904	chr6	41852615	41852616	rs1319012	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	6p21.1	USP49	rs1319012-A	0.923	2E-10		0.04451332	[0.031-0.058] unit decrease	Affymetrix [~ 2500000] (imputed)	N
904	chr6	41860251	41860252	rs11964516	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red blood cell traits (multivariate analysis)	29,513 European ancestry individuals	NA	6p21.1	NR	rs11964516-?	0.17	1E-11				Affymetrix, Illumina [21000000] (imputed)	N
904	chr6	41860251	41860252	rs11964516	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red blood cell traits (multivariate analysis)	20,697 Hispanic or Latin American individuals	NA	6p21.1	NR	rs11964516-?	0.16	2E-6				Affymetrix, Illumina [21000000] (imputed)	N
904	chr6	41860251	41860252	rs11964516	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red blood cell count	8,679 African American individuals, 17,412 Hispanic or Latin American individuals, 14,690 European ancestry individuals, 127 Asian ancestry individuals, 20 Native American ancestry individuals, 382 individuals	NA	6p21.1		rs11964516-?	0.1691	1E-6		0.0188	[0.011-0.026] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
904	chr6	41860251	41860252	rs11964516	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red blood cell count	14,690 European ancestry individuals	NA	6p21.1		rs11964516-?	0.1774	7E-6		0.0255	[0.014-0.037] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
904	chr6	41860251	41860252	rs11964516	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular volume	8,556 African American individuals, 17,141 Hispanic or Latin American individuals, 14,483 European ancestry individuals, 125 Asian ancestry individuals, 594 Native American ancestry individuals, 377 individuals	NA	6p21.1		rs11964516-?	0.1691	5E-19		0.4471	[0.35-0.55] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
904	chr6	41860251	41860252	rs11964516	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular volume	17,141 Hispanic or Latin American individuals	NA	6p21.1		rs11964516-?	0.1652	2E-9		0.5113	[0.35-0.68] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
904	chr6	41860251	41860252	rs11964516	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular volume	14,483 European ancestry individuals	NA	6p21.1		rs11964516-?	0.1774	1E-12		0.4834	[0.35-0.62] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
904	chr6	41860251	41860252	rs11964516	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin	8,694 African American individuals, 17,400 Hispanic or Latin American individuals, 14,693 European ancestry individuals, 127 Asian ancestry individuals, 20 Native American ancestry individuals, 382 individuals	NA	6p21.1		rs11964516-?	0.1691	2E-18		0.1687	[0.13-0.21] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
904	chr6	41860251	41860252	rs11964516	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin	17,400 Hispanic or Latin American individuals	NA	6p21.1		rs11964516-?	0.1652	4E-11		0.2021	[0.14-0.26] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
904	chr6	41860251	41860252	rs11964516	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin	14,693 European ancestry individuals	NA	6p21.1		rs11964516-?	0.1774	8E-12		0.1818	[0.13-0.23] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
904	chr6	41860251	41860252	rs11964516	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular volume	108,256 Japanese ancestry individuals	NA	6p21.1	NR	rs11964516-?	NR	4E-68		0.07846	[0.07-0.087] unit increase novel	Illumina [6108953] (imputed)	N
904	chr6	41864440	41864441	rs2031847	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	6p21.1	NR	rs2031847-G	0.9668	1E-8		0.0752	[0.049-0.101] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
904	chr6	41871785	41871786	rs9369314	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.1	MED20	rs9369314-A	NR	4E-11		0.0203244	[0.014-0.026] unit increase	Affymetrix [323123] (imputed)	N
904	chr6	41877670	41877671	rs114056237	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	6p21.1	MED20	rs114056237-A	0.0122	4E-28		0.1756219	[0.14-0.21] unit increase	Affymetrix [~ 2500000] (imputed)	N
904	chr6	41877670	41877671	rs114056237	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	6p21.1	MED20	rs114056237-A	0.0122	2E-23		0.1601294	[0.13-0.19] unit increase	Affymetrix [~ 2500000] (imputed)	N
904	chr6	41890981	41890982	rs2479724	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	6p21.1	BYSL, FRS3	rs2479724-T	0.45	1E-12		0.03	[0.02-0.04] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
904	chr6	41893322	41893323	rs9349203	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Menarche (age at onset)	76,831 European ancestry individuals	NA	6p21.1	BYSL	rs9349203-?	NR	5E-8		0.024	[0.015-0.032] unit increase	Illumina [12039492]	N
904	chr6	41895149	41895150	rs2296916	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	6p21.1	NR	rs2296916-A	NR	2E-11		0.0289	[0.02-0.037] unit increase	Affymetrix [9000000] (imputed)	N
904	chr6	41900648	41900649	rs41273806	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	6p21.1	BYSL	rs41273806-A	0.017742	1E-13		0.06270379	[0.046-0.079] unit decrease	Affymetrix [93095623] (imputed)	N
904	chr6	41901363	41901363	rs557375932	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	8,188 South Asian ancestry individuals	NA	6p21.1	NR	rs557375932-?	0.22724	6E-10		0.119766	[0.082-0.158] SD units decrease	Affymetrix, Illumina [28492174] (imputed)	N
904	chr6	41901762	41901763	rs3218116	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	6p21.1	NR	rs3218116-T	0.260969	2E-12		0.015978	[0.012-0.02] SD unit increase	Affymetrix, Illumina [50282193] (imputed)	N
904	chr6	41901762	41901763	rs3218116	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	6p21.1	NR	rs3218116-T	0.256	2E-14		0.00948977	[0.0071-0.0119] unit decrease	NR [9732723] (imputed)	N
904	chr6	41901762	41901763	rs3218116	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	6p21.1	NR	rs3218116-T	0.256	1E-11		0.019843036	[0.014-0.026] unit decrease	NR [~ 10000000] (imputed)	N
904	chr6	41903797	41903798	rs33966734	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.1	CCND3	rs33966734-A	NR	4E-10		0.0841077	[0.058-0.111] unit decrease	Affymetrix [323123] (imputed)	N
904	chr6	41903797	41903798	rs33966734	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	6p21.1	CCND3	rs33966734-A	0.0136	2E-41		0.1094	[0.094-0.125] unit decrease	Affymetrix [18391927] (imputed)	N
904	chr6	41903797	41903798	rs33966734	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	244,730 European ancestry women	NA	6p21.1	CCND3	rs33966734-A	0.014	3E-22		0.11	[0.088-0.132] unit decrease	Affymetrix [18391927] (imputed)	N
904	chr6	41903797	41903798	rs33966734	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	205,513 European ancestry men	NA	6p21.1	CCND3	rs33966734-A	0.014	6E-21		0.11	[0.086-0.134] unit decrease	Affymetrix [18391927] (imputed)	N
904	chr6	41903797	41903798	rs33966734	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6p21.1	CCND3	rs33966734-A	0.013563	1E-10		0.06319142	[0.044-0.082] unit decrease	Affymetrix [93095623] (imputed)	N
904	chr6	41903797	41903798	rs33966734	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	6p21.1	CCND3	rs33966734-A	0.013558	3E-22		0.09326705	[0.074-0.112] unit decrease	Affymetrix [93095623] (imputed)	N
904	chr6	41903797	41903798	rs33966734	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6p21.1	CCND3	rs33966734-A	0.013562	1E-68		0.17223442	[0.15-0.19] unit increase	Affymetrix [93095623] (imputed)	N
904	chr6	41903797	41903798	rs33966734	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	6p21.1	CCND3	rs33966734-A	0.0135650000000001	3E-54		0.15264302	[0.13-0.17] unit increase	Affymetrix [93095623] (imputed)	N
904	chr6	41903797	41903798	rs33966734	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	6p21.1	CCND3	rs33966734-A	0.013571	4E-73		0.179172	[0.16-0.2] unit increase	Affymetrix [93095623] (imputed)	N
904	chr6	41903797	41903798	rs33966734	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	6p21.1	CCND3	rs33966734-A	0.01357	1E-55		0.14795761	[0.13-0.17] unit increase	Affymetrix [93095623] (imputed)	N
904	chr6	41903797	41903798	rs33966734	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	6p21.1	NR	rs33966734-A	0.0135463	4E-11		0.192726	[0.13-0.25] unit decrease	Affymetrix [17914406] (imputed)	N
904	chr6	41903797	41903798	rs33966734	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	6p21.1		rs33966734-?	NR	5E-35				NR [~ 8900000] (imputed)	N
904	chr6	41903797	41903798	rs33966734	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	6p21.1	NR	rs33966734-?	NR	5E-9	(female)	0.61033	[0.41-0.82] unit decrease	Affymetrix [7794483] (imputed)	N
904	chr6	41903797	41903798	rs33966734	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	6p21.1	NR	rs33966734-?	NR	4E-10	(male)	0.94508	[0.65-1.24] unit decrease	Affymetrix [7794483] (imputed)	N
904	chr6	41903797	41903798	rs33966734	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	6p21.1	NR	rs33966734-?	NR	2E-16		0.78321	[0.6-0.97] unit decrease	Affymetrix [7794483] (imputed)	N
904	chr6	41905173	41905174	rs2479717	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	6p21.1	CCND3	rs2479717-A	0.739268	2E-34		0.03523075	[0.03-0.041] unit decrease	Affymetrix [93095623] (imputed)	N
904	chr6	41905274	41905275	rs3218097	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular hemoglobin concentration	up to 21,020 European ancestry individuals, up to 3,621 African American individuals, up to 15,062 East Asian individuals.	16,389 European and African American individuals.	6p21.1	CCND3	rs3218097-?	NR	1E-8				NR [2500000] (imputed)	N
904	chr6	41905274	41905275	rs3218097	23263863	Li J	2012-12-20	Hum Mol Genet	GWAS of blood cell traits identifies novel associated loci and epistatic interactions in Caucasian and African-American children.	Mean corpuscular volume	7,943 African American children, 6,234 European ancestry children	NA	6p21.1	BYSL, USP49, CCND3, MED20	rs3218097-T	NR	9E-8		0.422	[0.27-0.58] unit decrease	Illumina [544917]	N
904	chr6	41905274	41905275	rs3218097	20139978	Kamatani Y	2010-02-07	Nat Genet	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Red blood cell count	14,392 Japanese ancestry individuals	NA	6p21.1	BYSL, USP49, CCND3, MED20	rs3218097-T	0.19	1E-10		0.097	[0.068-0.126] unit increase	Illumina [561583]	N
904	chr6	41905274	41905275	rs3218097	20139978	Kamatani Y	2010-02-07	Nat Genet	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Mean corpuscular volume	14,364 Japanese ancestry individuals	NA	6p21.1	BYSL, USP49, CCND3, MED20	rs3218097-A	0.19	4E-27		0.162	[0.13-0.19] unit decrease	Illumina [561583]	N
904	chr6	41905274	41905275	rs3218097	20139978	Kamatani Y	2010-02-07	Nat Genet	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Mean corpuscular hemoglobin	Up to 14,362 Japanese ancestry individuals	NA	6p21.1	BYSL, USP49, CCND3, MED20	rs3218097-A	0.19	2E-20		0.139	[0.11-0.17] unit decrease	Illumina [561583]	N
904	chr6	41906519	41906527	rs144270286	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	6p21.1	CCND3	rs144270286-A	0.260917	6E-12		0.0176558	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
904	chr6	41906660	41906661	rs3218092	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	6p21.1	CCND3	rs3218092-G	0.183389	5E-12		0.022157181	[0.016-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
904	chr6	41906660	41906661	rs3218092	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	6p21.1	CCND3	rs3218092-G	0.1854	3E-32		0.05385889	[0.045-0.063] unit decrease	Affymetrix [~ 2500000] (imputed)	N
904	chr6	41907854	41907855	rs1410492	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p21.1	NR	rs1410492-C	0.241466	1E-10				Affymetrix, Illumina [21126107] (imputed)	N
904	chr6	41907854	41907855	rs1410492	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red cell distribution width	6,141 African American individuals, 17,272 Hispanic or Latin American individuals, 9,611 European ancestry individuals, 123 Asian ancestry individuals, 20 Native American ancestry individuals, 382 individuals	NA	6p21.1		rs1410492-?	0.7938	2E-6		0.0491	[0.029-0.069] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
904	chr6	41907854	41907855	rs1410492	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red blood cell traits (multivariate analysis)	29,513 European ancestry individuals	NA	6p21.1	NR	rs1410492-?	0.75	1E-11				Affymetrix, Illumina [21000000] (imputed)	N
904	chr6	41907854	41907855	rs1410492	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red blood cell traits (multivariate analysis)	20,697 Hispanic or Latin American individuals	NA	6p21.1	NR	rs1410492-?	0.86	1E-7				Affymetrix, Illumina [21000000] (imputed)	N
904	chr6	41907854	41907855	rs1410492	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red blood cell count	8,679 African American individuals, 17,412 Hispanic or Latin American individuals, 14,690 European ancestry individuals, 127 Asian ancestry individuals, 20 Native American ancestry individuals, 382 individuals	NA	6p21.1		rs1410492-?	0.7938	2E-14		0.0295	[0.022-0.037] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
904	chr6	41907854	41907855	rs1410492	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red blood cell count	17,412 Hispanic or Latin American individuals	NA	6p21.1		rs1410492-?	0.8586	2E-6		0.0294	[0.017-0.042] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
904	chr6	41907854	41907855	rs1410492	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red blood cell count	14,690 European ancestry individuals	NA	6p21.1		rs1410492-?	0.75	7E-9		0.0284	[0.019-0.038] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
904	chr6	41907854	41907855	rs1410492	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular volume	8,556 African American individuals, 17,141 Hispanic or Latin American individuals, 14,483 European ancestry individuals, 125 Asian ancestry individuals, 594 Native American ancestry individuals, 377 individuals	NA	6p21.1		rs1410492-?	0.7938	3E-19		0.4388	[0.34-0.53] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
904	chr6	41907854	41907855	rs1410492	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular volume	17,141 Hispanic or Latin American individuals	NA	6p21.1		rs1410492-?	0.8586	2E-7		0.4776	[0.3-0.66] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
904	chr6	41907854	41907855	rs1410492	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular volume	14,483 European ancestry individuals	NA	6p21.1		rs1410492-?	0.75	1E-13		0.438	[0.32-0.55] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
904	chr6	41907854	41907855	rs1410492	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin	8,694 African American individuals, 17,400 Hispanic or Latin American individuals, 14,693 European ancestry individuals, 127 Asian ancestry individuals, 20 Native American ancestry individuals, 382 individuals	NA	6p21.1		rs1410492-?	0.7938	1E-14		0.1459	[0.11-0.18] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
904	chr6	41907854	41907855	rs1410492	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin	17,400 Hispanic or Latin American individuals	NA	6p21.1		rs1410492-?	0.8586	2E-8		0.1881	[0.12-0.25] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
904	chr6	41907854	41907855	rs1410492	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin	14,693 European ancestry individuals	NA	6p21.1		rs1410492-?	0.75	2E-9		0.1377	[0.092-0.183] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
904	chr6	41907854	41907855	rs1410492	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Red blood cell count	108,794 Japanese ancestry individuals	NA	6p21.1	CCND3	rs1410492-?	NR	8E-43		0.07398	[0.063-0.085] unit increase novel	Illumina [6108953] (imputed)	N
904	chr6	41909521	41909523	rs66934106	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6p21.1	CCND3	rs66934106-C	0.9297604	2E-38		0.06862714	[0.058-0.079] unit increase	Affymetrix [93095623] (imputed)	N
904	chr6	41909521	41909523	rs66934106	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	6p21.1	CCND3	rs66934106-C	0.9297301	5E-29		0.0794939	[0.071-0.088] unit increase	Affymetrix [93095623] (imputed)	N
904	chr6	41909522	41909524	rs3050131	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	6p21.1		rs3050131-C	NR	3E-20		0.0394	[0.031-0.048] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
904	chr6	41909522	41909524	rs3050131	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	6p21.1		rs3050131-C	NR	2E-54		0.053	[0.046-0.06] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
904	chr6	41909522	41909524	rs3050131	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	6p21.1		rs3050131-C	NR	1E-8		0.027	[0.018-0.036] unit decrease	Affymetrix, Illumina [20538307] (imputed)	N
904	chr6	41914377	41914378	rs9349204	23222517	van der Harst P	2012-12-05	Nature	Seventy-five genetic loci influencing the human red blood cell.	Red blood cell traits	62,553 European ancestry individuals, 9,308 South Asian ancestry individuals	63,506 European ancestry individuals	6p21.1	CCND3	rs9349204-G	0.27	2E-40	(EA, MCV)	0.367	[0.31-0.42] unit decrease	Affymetrix, Illumina, Perlegen [2711806] (imputed)	N
904	chr6	41915513	41915514	rs147929970	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	6p21.1	CCND3	rs147929970-A	0.016796	8E-10		0.0824807	[0.067-0.098] unit increase	Affymetrix [93095623] (imputed)	N
904	chr6	41916071	41916072	rs12528656	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	6p21.1	CCND3	rs12528656-G	0.284298	7E-18		0.021588786	[0.017-0.026] unit increase	Affymetrix [93095623] (imputed)	N
904	chr6	41916071	41916072	rs12528656	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6p21.1	CCND3	rs12528656-G	0.28451	2E-17		0.028945778	[0.022-0.036] unit increase	Affymetrix [93095623] (imputed)	N
904	chr6	41916071	41916072	rs12528656	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	6p21.1	CCND3	rs12528656-G	0.284539	2E-19		0.029385207	[0.023-0.036] unit increase	Affymetrix [93095623] (imputed)	N
904	chr6	41919175	41919183	rs143111788	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	6p21.1	CCND3	rs143111788-C	0.5568	4E-9		0.02103781	[0.014-0.028] unit increase	Affymetrix [~ 2500000] (imputed)	N
904	chr6	41920995	41920996	rs9296369	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	6p21.1	CCND3	rs9296369-T	0.2666	4E-35		0.0493826	[0.042-0.057] unit increase	Affymetrix [~ 2500000] (imputed)	N
904	chr6	41920995	41920996	rs9296369	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	6p21.1	CCND3	rs9296369-T	0.2666	3E-23		0.03977104	[0.032-0.048] unit increase	Affymetrix [~ 2500000] (imputed)	N
904	chr6	41921240	41921241	rs10947997	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	6p21.1	CCND3	rs10947997-T	0.177262	8E-45		0.0442848	[0.038-0.05] unit decrease	Affymetrix [93095623] (imputed)	N
904	chr6	41921240	41921241	rs10947997	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6p21.1	CCND3	rs10947997-T	0.177158	2E-24		0.07848104	[0.063-0.094] unit increase	Affymetrix [93095623] (imputed)	N
904	chr6	41921240	41921241	rs10947997	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	6p21.1	CCND3	rs10947997-T	0.177299	2E-160		0.10259428	[0.095-0.11] unit increase	Affymetrix [93095623] (imputed)	N
904	chr6	41921240	41921241	rs10947997	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	6p21.1	CCND3	rs10947997-T	0.177261	5E-266		0.144124	[0.14-0.15] unit increase	Affymetrix [93095623] (imputed)	N
904	chr6	41921240	41921241	rs10947997	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	6p21.1	CCND3	rs10947997-T	0.177307	8E-199		0.08917081	[0.083-0.095] unit increase	Affymetrix [93095623] (imputed)	N
904	chr6	41921240	41921241	rs10947997	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	6p21.1	CCND3	rs10947997-T	0.177	4E-24		0.04761274	[0.038-0.057] unit decrease	Affymetrix [~ 2500000] (imputed)	N
904	chr6	41921240	41921241	rs10947997	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	6p21.1	CCND3	rs10947997-T	0.1771	1E-58		0.07501178	[0.066-0.084] unit decrease	Affymetrix [~ 2500000] (imputed)	N
904	chr6	41924930	41924931	rs16895130	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular volume	108,256 Japanese ancestry individuals	NA	6p21.1	NR	rs16895130-?	NR	7E-7		0.03681	[0.022-0.051] unit decrease novel	Illumina [6108953] (imputed)	N
904	chr6	41924930	41924931	rs16895130	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin	108,054 Japanese ancestry individuals	NA	6p21.1	NR	rs16895130-?	NR	9E-14	(conditional on round 2)	0.055094805	[0.041-0.07] unit decrease novel	Illumina [6108953] (imputed)	N
904	chr6	41924997	41924998	rs112233623	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	6p21.1	CCND3	rs112233623-T	0.00995299999999999	8E-48		0.17265564	[0.15-0.2] unit decrease	Affymetrix [93095623] (imputed)	N
904	chr6	41924997	41924998	rs112233623	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6p21.1	CCND3	rs112233623-T	0.00995100000000004	3E-90		0.23957828	[0.22-0.26] unit decrease	Affymetrix [93095623] (imputed)	N
904	chr6	41924997	41924998	rs112233623	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	6p21.1	CCND3	rs112233623-T	0.009934	4E-65		0.19990076	[0.18-0.22] unit decrease	Affymetrix [93095623] (imputed)	N
904	chr6	41924997	41924998	rs112233623	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	6p21.1	CCND3	rs112233623-T	0.00993599999999994	1E-195		0.34691525	[0.32-0.37] unit decrease	Affymetrix [93095623] (imputed)	N
904	chr6	41924997	41924998	rs112233623	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6p21.1	CCND3	rs112233623-T	0.009938	3E-55		0.44358674	[0.39-0.5] unit increase	Affymetrix [93095623] (imputed)	N
904	chr6	41924997	41924998	rs112233623	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	6p21.1	CCND3	rs112233623-T	0.00998100000000002	1E-51		0.43393233	[0.38-0.49] unit increase	Affymetrix [93095623] (imputed)	N
904	chr6	41924997	41924998	rs112233623	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	6p21.1	CCND3	rs112233623-T	0.00994700000000004	6E-54		0.474578	[0.45-0.5] unit increase	Affymetrix [93095623] (imputed)	N
904	chr6	41924997	41924998	rs112233623	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	6p21.1	CCND3	rs112233623-T	0.00994600000000001	7E-42		0.37409043	[0.32-0.43] unit increase	Affymetrix [93095623] (imputed)	N
904	chr6	41924997	41924998	rs112233623	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	6p21.1	CCND3	rs112233623-T	0.00994399999999995	2E-26		0.12549788	[0.1-0.15] unit decrease	Affymetrix [93095623] (imputed)	N
904	chr6	41924997	41924998	rs112233623	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6p21.1	CCND3	rs112233623-T	0.00994300000000004	1E-51		0.1786727	[0.16-0.2] unit decrease	Affymetrix [93095623] (imputed)	N
904	chr6	41924997	41924998	rs112233623	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	6p21.1		rs112233623-?	NR	3E-288				NR [~ 8900000] (imputed)	N
904	chr6	41924997	41924998	rs112233623	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	6p21.1	CCND3	rs112233623-T	NR	3E-18		0.181898	[0.14-0.22] unit decrease	Affymetrix [16832071] (imputed)	N
904	chr6	41924997	41924998	rs112233623	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	6p21.1	CCND3	rs112233623-T	0.0105	7E-18		0.1619368	[0.13-0.2] unit decrease	Affymetrix [~ 2500000] (imputed)	N
904	chr6	41924997	41924998	rs112233623	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	6p21.1	CCND3	rs112233623-T	0.0105	7E-40		0.2492646	[0.21-0.29] unit decrease	Affymetrix [~ 2500000] (imputed)	N
904	chr6	41924997	41924998	rs112233623	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	6p21.1	CCND3	rs112233623-T	0.0105	2E-121		0.4378165	[0.4-0.47] unit increase	Affymetrix [~ 2500000] (imputed)	N
904	chr6	41924997	41924998	rs112233623	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	6p21.1	CCND3	rs112233623-T	0.0105	7E-93		0.3832136	[0.35-0.42] unit increase	Affymetrix [~ 2500000] (imputed)	N
904	chr6	41924997	41924998	rs112233623	27668658	Iotchkova V	2016-11-01	Nat Genet	Discovery and refinement of genetic loci associated with cardiometabolic risk using dense imputation maps.	Cardiometabolic and hematological traits	up to 35,981 European ancestry individuals	up to 102,505 European ancestry individuals	6p21.1	CCND3	rs112233623-T		6E-49	(MCV)	0.723	[0.63-0.82] fL increase	Affymetrix, Illumina [17000000] (imputed)	N
904	chr6	41925158	41925159	rs9349205	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	6p21.1		rs9349205-A	NR	2E-249		0.0681	[0.064-0.072] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
904	chr6	41925158	41925159	rs9349205	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	153,512 East Asian ancestry individuals	NA	6p21.1		rs9349205-A	0.188832	2E-59		0.0644554	[0.057-0.072] unit increase	Illumina [13479135] (imputed)	N
904	chr6	41925158	41925159	rs9349205	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	6p21.1		rs9349205-A	NR	9E-718		0.1338	[0.13-0.14] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
904	chr6	41925158	41925159	rs9349205	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	6p21.1		rs9349205-A	0.188024	1E-196		0.135979	[0.13-0.14] unit decrease	Illumina [13476266] (imputed)	N
904	chr6	41925158	41925159	rs9349205	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	6p21.1		rs9349205-A	NR	3E-531		0.1153	[0.11-0.12] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
904	chr6	41925158	41925159	rs9349205	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	6p21.1		rs9349205-A	0.188002	9E-149		0.119305	[0.11-0.13] unit decrease	Illumina [13476299] (imputed)	N
904	chr6	41925158	41925159	rs9349205	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	6p21.1	CCND3	rs9349205-A	0.251331	4E-101		0.05836414	[0.053-0.064] unit increase	Affymetrix [93095623] (imputed)	N
904	chr6	41925158	41925159	rs9349205	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6p21.1	CCND3	rs9349205-A	0.251328	3E-125		0.070895255	[0.065-0.077] unit increase	Affymetrix [93095623] (imputed)	N
904	chr6	41925158	41925159	rs9349205	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	6p21.1	CCND3	rs9349205-A	0.251359	5E-255		0.09723531	[0.092-0.103] unit increase	Affymetrix [93095623] (imputed)	N
904	chr6	41925158	41925159	rs9349205	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6p21.1	CCND3	rs9349205-A	0.251502	8E-357		0.13755314	[0.13-0.14] unit decrease	Affymetrix [93095623] (imputed)	N
904	chr6	41925158	41925159	rs9349205	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	6p21.1	CCND3	rs9349205-A	0.251299	4E-341		0.13140091	[0.12-0.14] unit decrease	Affymetrix [93095623] (imputed)	N
904	chr6	41925158	41925159	rs9349205	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	6p21.1	CCND3	rs9349205-A	0.251304	3E-535		0.147576	[0.14-0.15] unit decrease	Affymetrix [93095623] (imputed)	N
904	chr6	41925158	41925159	rs9349205	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	6p21.1	CCND3	rs9349205-A	0.251298	7E-376		0.1207677	[0.12-0.13] unit decrease	Affymetrix [93095623] (imputed)	N
904	chr6	41925158	41925159	rs9349205	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	6p21.1	CCND3	rs9349205-A	0.251383	2E-41		0.034939766	[0.03-0.04] unit increase	Affymetrix [93095623] (imputed)	N
904	chr6	41925158	41925159	rs9349205	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6p21.1	CCND3	rs9349205-A	0.251385	2E-112		0.061247956	[0.056-0.067] unit increase	Affymetrix [93095623] (imputed)	N
904	chr6	41925158	41925159	rs9349205	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p21.1	NR	rs9349205-G	0.75701	6E-170				Affymetrix, Illumina [22063850] (imputed)	N
904	chr6	41925158	41925159	rs9349205	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	6p21.1	NR	rs9349205-G	0.749704	3E-169		0.06	[0.056-0.064] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
904	chr6	41925158	41925159	rs9349205	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	6p21.1	NR	rs9349205-A	0.25012	9E-360		0.085942	[0.082-0.09] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
904	chr6	41925158	41925159	rs9349205	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	150,708 East Asian ancestry individuals	NA	6p21.1	NR	rs9349205-G	0.80453	3E-54		0.071488	[0.062-0.081] SD units decrease	Affymetrix, Illumina [16709798] (imputed)	N
904	chr6	41925158	41925159	rs9349205	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	121,047 East Asian ancestry individuals	NA	6p21.1	NR	rs9349205-G	0.809084	7E-179		0.147681	[0.14-0.16] SD units increase	Affymetrix, Illumina [16286195] (imputed)	N
904	chr6	41925158	41925159	rs9349205	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	119,629 East Asian ancestry individuals	NA	6p21.1	NR	rs9349205-G	0.809069	6E-138		0.130292	[0.12-0.14] SD units increase	Affymetrix, Illumina [16286228] (imputed)	N
904	chr6	41925158	41925159	rs9349205	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	6p21.1		rs9349205-?	NR	3E-127				NR [~ 8900000] (imputed)	N
904	chr6	41925158	41925159	rs9349205	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	6p21.1		rs9349205-?	NR	1E-289				NR [~ 8900000] (imputed)	N
904	chr6	41925158	41925159	rs9349205	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular volume	108,256 Japanese ancestry individuals	NA	6p21.1	CCND3	rs9349205-?	NR	2E-157		0.1465	[0.14-0.16] unit decrease novel	Illumina [6108953] (imputed)	N
904	chr6	41925158	41925159	rs9349205	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin	108,054 Japanese ancestry individuals	NA	6p21.1	CCND3	rs9349205-?	NR	2E-116		0.1257	[0.11-0.14] unit decrease novel	Illumina [6108953] (imputed)	N
904	chr6	41925158	41925159	rs9349205	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	6p21.1	CCND3	rs9349205-A	NR	1E-35		0.0534554	[0.045-0.062] unit increase	Affymetrix [16832071] (imputed)	N
904	chr6	41925158	41925159	rs9349205	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Red blood cell count	up to 40,258 European ancestry individuals, up to 16,128 African American individuals, up to 15,252 East Asian individuals.	16,389 individuals of European and African American ancestry.	6p21.1	CCND3	rs9349205-A	NR	2E-9	(Asian)	0.009	[0.0061-0.0119] unit increase	NR [2500000] (imputed)	N
904	chr6	41925158	41925159	rs9349205	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Red blood cell count	up to 40,258 European ancestry individuals, up to 16,128 African American individuals, up to 15,252 East Asian individuals.	16,389 individuals of European and African American ancestry.	6p21.1	CCND3	rs9349205-?	NR	1E-8				NR [2500000] (imputed)	N
904	chr6	41925158	41925159	rs9349205	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular volume	up to 29,946 European ancestry individuals, up to 6150 African American individuals, 15,074 East Asian individuals.	16,389 individuals of European and African American ancestry.	6p21.1	CCND3	rs9349205-?	NR	9E-62				NR [2500000] (imputed)	N
904	chr6	41925158	41925159	rs9349205	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular hemoglobin	up to 21,020 European ancestry individuals, up to 3,621 African American individuals, up to 15,062 East Asian individuals.	16,389 individuals of European and African American ancestry.	6p21.1	CCND3	rs9349205-?	NR	1E-8				NR [2500000] (imputed)	N
904	chr6	41925158	41925159	rs9349205	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	6p21.1	CCND3	rs9349205-A	0.2513	8E-18		0.03545363	[0.027-0.044] unit increase	Affymetrix [~ 2500000] (imputed)	N
904	chr6	41925158	41925159	rs9349205	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	6p21.1	CCND3	rs9349205-A	0.2513	6E-38		0.05312568	[0.045-0.061] unit increase	Affymetrix [~ 2500000] (imputed)	N
904	chr6	41925158	41925159	rs9349205	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	6p21.1	CCND3	rs9349205-A	0.2513	3E-85		0.07981425	[0.072-0.088] unit increase	Affymetrix [~ 2500000] (imputed)	N
904	chr6	41925158	41925159	rs9349205	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	6p21.1	CCND3	rs9349205-A	0.2513	3E-260		0.1393749	[0.13-0.15] unit decrease	Affymetrix [~ 2500000] (imputed)	N
904	chr6	41925158	41925159	rs9349205	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	6p21.1	CCND3	rs9349205-A	0.2513	1E-17		0.03523184	[0.027-0.043] unit increase	Affymetrix [~ 2500000] (imputed)	N
904	chr6	41925158	41925159	rs9349205	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6p21.1	BYSL	rs9349205-?	NR	6E-7	(TAG 52:3)	0.2045097	[0.12-0.28] unit increase	Affymetrix [at least 2500000] (imputed)	N
904	chr6	41925158	41925159	rs9349205	19862010	Ganesh SK	2009-10-11	Nat Genet	Multiple loci influence erythrocyte phenotypes in the CHARGE Consortium.	Mean corpuscular volume	24,167 European ancestry individuals	9,456 European ancestry individuals	6p21.1	BYSL, CCND3	rs9349205-A	NR	1E-31		0.01	[0.004-0.006] fl decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
904	chr6	41925158	41925159	rs9349205	19862010	Ganesh SK	2009-10-11	Nat Genet	Multiple loci influence erythrocyte phenotypes in the CHARGE Consortium.	Mean corpuscular hemoglobin	24,167 European ancestry individuals	9,456 European ancestry individuals	6p21.1	BYSL, CCND3	rs9349205-A	NR	8E-20		0.01	[0.004-0.006] pg decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
904	chr6	41925289	41925290	rs11970772	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	6p21.1	CCND3	rs11970772-A	0.212	3E-211		0.1326727	[0.12-0.14] unit increase	Affymetrix [~ 2500000] (imputed)	N
904	chr6	41925289	41925290	rs11970772	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	6p21.1	CCND3	rs11970772-A	0.212	8E-156		0.1141523	[0.11-0.12] unit increase	Affymetrix [~ 2500000] (imputed)	N
904	chr6	41925289	41925290	rs11970772	19820697	Soranzo N	2009-10-11	Nat Genet	A genome-wide meta-analysis identifies 22 loci associated with eight hematological parameters in the HaemGen consortium.	Hematological parameters	4,627 European ancestry individuals	9,316 European ancestry individuals	6p21.1	BYSL, CCND3	rs11970772-T	NR	7E-19	(MCV)	0.58	[0.44-0.70] fl increase	Affymetrix, Illumina [~ 2110000] (imputed)	N
904	chr6	41925303	41925304	rs11968166	21507922	Ramsuran V	2011-05-01	Clin Infect Dis	Duffy-null-associated low neutrophil counts influence HIV-1 susceptibility in high-risk South African black women.	Neutrophil count	115 African ancestry HIV-negative individuals	NA	6p21.1	CCND3	rs11968166-?	NR	8E-6				Illumina [874956]	N
904	chr6	41926934	41926935	rs9394841	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	6p21.1	CCND3	rs9394841-C	0.256728	7E-139		0.07397647	[0.068-0.08] unit increase	Affymetrix [93095623] (imputed)	N
904	chr6	41926934	41926935	rs9394841	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	6p21.1	CCND3	rs9394841-C	0.2571	2E-46		0.05836261	[0.05-0.066] unit increase	Affymetrix [~ 2500000] (imputed)	N
904	chr6	41926934	41926935	rs9394841	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	6p21.1	CCND3	rs9394841-C	0.257	3E-178		0.1158126	[0.11-0.12] unit decrease	Affymetrix [~ 2500000] (imputed)	N
904	chr6	41934103	41934104	rs72853818	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.1	CCND3	rs72853818-C	NR	4E-12		0.0258371	[0.019-0.033] unit increase	Affymetrix [323123] (imputed)	N
904	chr6	41934513	41934514	rs4130023	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	6p21.1	CCND3	rs4130023-T	0.2084	2E-8		0.0149	[0.0098-0.02] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
904	chr6	41937057	41937058	rs113756602	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	6p21.1	CCND3	rs113756602-C	0.25266	9E-31		0.031091075	[0.026-0.036] unit increase	Affymetrix [93095623] (imputed)	N
904	chr6	41937057	41937058	rs113756602	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6p21.1	CCND3	rs113756602-C	0.252658	1E-25		0.030406835	[0.025-0.036] unit increase	Affymetrix [93095623] (imputed)	N
904	chr6	41937057	41937058	rs113756602	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6p21.1	CCND3	rs113756602-C	0.252642	6E-34		0.03257512	[0.027-0.038] unit increase	Affymetrix [93095623] (imputed)	N
904	chr6	41941992	41941993	rs72853828	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	6p21.1	CCND3	rs72853828-C	0.216961	2E-17		0.024070619	[0.019-0.03] unit increase	Affymetrix [93095623] (imputed)	N
905	chr6	41944095	41944095	rs113788088	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	6p21.1	CCND3	rs113788088-GA	0.202771	1E-11		0.021908343	[0.016-0.028] unit increase	Affymetrix [93095623] (imputed)	N
905	chr6	41945896	41945897	rs6939464	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	6p21.1	CCND3	rs6939464-A	0.128278	3E-20		0.03551933	[0.028-0.043] unit increase	Affymetrix [93095623] (imputed)	N
905	chr6	41946439	41946440	rs7774393	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	6p21.1		rs7774393-G	NR	4E-14		0.0169	[0.013-0.021] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
905	chr6	41952510	41952511	rs113267280	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6p21.1	CCND3	rs113267280-G	0.00990899999999995	2E-18		0.24612151	[0.19-0.3] unit increase	Affymetrix [93095623] (imputed)	N
905	chr6	41952510	41952511	rs113267280	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	6p21.1	CCND3	rs113267280-G	0.00995100000000004	5E-11		0.18733634	[0.13-0.24] unit increase	Affymetrix [93095623] (imputed)	N
905	chr6	41952510	41952511	rs113267280	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	6p21.1	CCND3	rs113267280-G	0.00992000000000004	3E-16		0.45862	[0.44-0.48] unit increase	Affymetrix [93095623] (imputed)	N
905	chr6	41952510	41952511	rs113267280	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	6p21.1	CCND3	rs113267280-G	0.00991799999999998	5E-10		0.17070511	[0.12-0.22] unit increase	Affymetrix [93095623] (imputed)	N
905	chr6	41952510	41952511	rs113267280	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	6p21.1	CCND3	rs113267280-G	0.0102	3E-10		0.1208241	[0.083-0.158] unit decrease	Affymetrix [~ 2500000] (imputed)	N
905	chr6	41952510	41952511	rs113267280	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	6p21.1	CCND3	rs113267280-G	0.0102	4E-19		0.1716687	[0.13-0.21] unit decrease	Affymetrix [~ 2500000] (imputed)	N
905	chr6	41952510	41952511	rs113267280	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	6p21.1	CCND3	rs113267280-G	0.0102	4E-10		0.1197863	[0.082-0.157] unit decrease	Affymetrix [~ 2500000] (imputed)	N
905	chr6	41953860	41953861	rs36102271	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.1	CCND3	rs36102271-A	NR	7E-14		0.0245582	[0.018-0.031] unit increase	Affymetrix [323123] (imputed)	N
905	chr6	41956352	41956353	rs9471708	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	6p21.1		rs9471708-C	0.728	1E-493		0.58	[0.56-0.6] % increase	Affymetrix [NR] (imputed)	N
905	chr6	41962670	41962671	rs9357377	23319000	Luykx JJ	2013-01-15	Mol Psychiatry	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (5-HIAA/ MHPG Ratio)	up to 398 European ancestry individuals	NA	6p21.1	CCND3	rs9357377-A		5E-6		0.2747	unit increase	Illumina [5767231] (imputed)	N
905	chr6	41975692	41975693	rs182679717	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	6p21.1		rs182679717-?	NR	6E-21				NR [~ 8900000] (imputed)	N
905	chr6	41978609	41978612	rs144387335	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	6p21.1		rs144387335-A	NR	9E-54		0.0394	[0.034-0.044] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
905	chr6	41978609	41978612	rs144387335	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	6p21.1	CCND3	rs144387335-A	0.252591	1E-60		0.04214212	[0.037-0.047] unit increase	Affymetrix [93095623] (imputed)	N
905	chr6	41978609	41978612	rs144387335	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	6p21.1	CCND3	rs144387335-A	0.252569	2E-66		0.044089142	[0.039-0.049] unit increase	Affymetrix [93095623] (imputed)	N
905	chr6	41978609	41978612	rs144387335	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	6p21.1	CCND3	rs144387335-A	0.2538	8E-28		0.04501707	[0.037-0.053] unit increase	Affymetrix [~ 2500000] (imputed)	N
905	chr6	41978609	41978612	rs144387335	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	6p21.1	CCND3	rs144387335-A	0.2537	3E-23		0.04100538	[0.033-0.049] unit increase	Affymetrix [~ 2500000] (imputed)	N
905	chr6	41978609	41978612	rs144387335	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	6p21.1	CCND3	rs144387335-A	0.2536	2E-27		0.04470637	[0.037-0.053] unit decrease	Affymetrix [~ 2500000] (imputed)	N
905	chr6	41981076	41981077	rs9349211	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p21.1	NR	rs9349211-G	0.341765	4E-340				Affymetrix, Illumina [24246363] (imputed)	N
905	chr6	41981877	41981878	rs6912057	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	6p21.1	CCND3	rs6912057-C	0.363542	4E-28		0.0745233	[0.07-0.079] unit increase	Affymetrix [93095623] (imputed)	N
905	chr6	41981877	41981878	rs6912057	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	6p21.1	CCND3	rs6912057-C	0.363583	6E-20		0.022735674	[0.018-0.028] unit increase	Affymetrix [93095623] (imputed)	N
905	chr6	41983430	41983431	rs4714548	28453575	Hodonsky CJ	2017-04-28	PLoS Genet	Genome-wide association study of red blood cell traits in Hispanics/Latinos: The Hispanic Community Health Study/Study of Latinos.	Mean corpuscular volume	12,502 Hispanic/Latino individuals	4,772 Hispanic/Latino individuals	6p21.1	CCND3	rs4714548-A	0.18	1E-9		0.58	[0.38-0.78] fL decrease	Illumina [27801688] (imputed)	N
905	chr6	41985435	41985436	rs9381118	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	6p21.1		rs9381118-?	NR	6E-9				NR [~ 8900000] (imputed)	N
905	chr6	41986268	41986269	rs72664259	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.1	CCND3	rs72664259-G	NR	3E-10		0.0224866	[0.015-0.029] unit increase	Affymetrix [323123] (imputed)	N
905	chr6	41986426	41986427	rs142449754	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p21.1	NR	rs142449754-T	0.219624	3E-70				Affymetrix, Illumina [23467995] (imputed)	N
905	chr6	41987450	41987451	rs4711698	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.1		rs4711698-C	0.244	9E-29				Affymetrix [10369434] (imputed)	N
905	chr6	41987543	41987544	rs9367125	28453575	Hodonsky CJ	2017-04-28	PLoS Genet	Genome-wide association study of red blood cell traits in Hispanics/Latinos: The Hispanic Community Health Study/Study of Latinos.	Mean corpuscular hemoglobin	12,502 Hispanic/Latino individuals	4,772 Hispanic/Latino individuals	6p21.1	CCND3	rs9367125-G	0.92	1E-8		0.29	[0.19-0.39] pg increase	Illumina [27801688] (imputed)	N
905	chr6	41988741	41988742	rs56144648	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	6p21.1	CCND3	rs56144648-A	NR	7E-12	(EA)			Affymetrix, Illumina [NR] (imputed)	N
905	chr6	41988741	41988742	rs56144648	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	6p21.1	CCND3	rs56144648-A	NR	6E-10				Affymetrix, Illumina [NR] (imputed)	N
905	chr6	41988741	41988742	rs56144648	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	6p21.1	CCND3	rs56144648-A	NR	3E-10	(EA)			Affymetrix, Illumina [NR] (imputed)	N
905	chr6	41988741	41988742	rs56144648	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	6p21.1	CCND3	rs56144648-A	NR	2E-8				Affymetrix, Illumina [NR] (imputed)	N
905	chr6	41990790	41990791	rs72664260	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	6p21.1		rs72664260-C	0.757	7E-13				Affymetrix [10369434] (imputed)	N
905	chr6	41990790	41990791	rs72664260	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	6p21.1	NR	rs72664260-T	NR	6E-11		0.0191	[0.013-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
905	chr6	41990790	41990791	rs72664260	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	6p21.1	NR	rs72664260-T	NR	1E-17		0.0249	[0.019-0.031] unit decrease	Affymetrix [9000000] (imputed)	N
905	chr6	41990790	41990791	rs72664260	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	6p21.1	NR	rs72664260-T	NR	1E-12		0.0208	[0.015-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
905	chr6	41991739	41991740	rs7750688	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	6p21.1	CCND3	rs7750688-C	0.243395	4E-22		0.0214656	[0.017-0.026] unit decrease	Affymetrix [NR] (imputed)	N
905	chr6	41992982	41992983	rs4714554	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	6p21.1	CCND3	rs4714554-A	0.388508	2E-12		0.0143264	[0.01-0.018] unit decrease	Affymetrix [NR] (imputed)	N
905	chr6	41993166	41993167	rs7770391	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6p21.1	CCND3	rs7770391-T	0.349518	7E-23		0.026432304	[0.021-0.032] unit increase	Affymetrix [93095623] (imputed)	N
905	chr6	41993228	41993229	rs4714556	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	HDL cholesterol levels	34,930 East Asian ancestry individuals, 187,167 European ancestry individuals	8,741 Chinese ancestry individuals	6p21.1	CCND3, TAF8	rs4714556-A	0.372	2E-7	(Trans-ethnic initial)	0.0177	[0.011-0.025] unit increase (EA Beta values)	Affymetrix, Illumina [~ 1900000] (imputed)	N
905	chr6	41993687	41993688	rs12214723	26242244	Ma Y	2015-08-05	Sci Rep	Association of chromosome 5q21.3 polymorphisms with the exploratory eye movement dysfunction in schizophrenia.	Exploratory eye movement dysfunction in schizophrenia (responsive search score)	128 Han Chinese ancestry cases	NA	6p21.1	TAF8	rs12214723-?	NR	3E-6		6.202	[3.7-8.7] unit decrease	Illumina [498648]	N
905	chr6	41993687	41993688	rs12214723	26242244	Ma Y	2015-08-05	Sci Rep	Association of chromosome 5q21.3 polymorphisms with the exploratory eye movement dysfunction in schizophrenia.	Exploratory eye movement dysfunction in schizophrenia (number of eye fixations)	128 Han Chinese ancestry cases	NA	6p21.1	TAF8	rs12214723-?	NR	4E-6		17.14	[10.19-24.09] unit decrease	Illumina [498648]	N
905	chr6	41993687	41993688	rs12214723	26242244	Ma Y	2015-08-05	Sci Rep	Association of chromosome 5q21.3 polymorphisms with the exploratory eye movement dysfunction in schizophrenia.	Exploratory eye movement dysfunction in schizophrenia (cognitive search score)	128 Han Chinese ancestry cases	NA	6p21.1	TAF8	rs12214723-?	NR	7E-6		3.726	[2.17-5.28] unit decrease	Illumina [498648]	N
905	chr6	41999808	41999809	rs12199246	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6p21.1	CCND3	rs12199246-A	0.087608	8E-22		0.03969315	[0.032-0.048] unit decrease	Affymetrix [93095623] (imputed)	N
905	chr6	42007402	42007403	rs67289879	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	6p21.1	CCND3	rs67289879-T	0.179	3E-8		1.09	1.06-1.13	Illumina [9725440] (imputed)	N
905	chr6	42007402	42007403	rs67289879	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	6p21.1	CCND3	rs67289879-?		2E-7				Illumina [9560910] (imputed)	N
905	chr6	42010419	42010420	rs12200388	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	6p21.1	CCND3	rs12200388-G	0.169939	1E-11		0.020987153	[0.015-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
905	chr6	42010419	42010420	rs12200388	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	6p21.1	CCND3	rs12200388-G	0.170085	1E-12		0.02123092	[0.015-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
905	chr6	42012158	42012159	rs4554318	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	6p21.1		rs4554318-?	NR	2E-26				NR [~ 8900000] (imputed)	N
905	chr6	42014303	42014304	rs9369327	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	6p21.1	CCND3	rs9369327-T	0.0664	3E-10		0.04541175	[0.031-0.06] unit decrease	Affymetrix [~ 2500000] (imputed)	N
905	chr6	42015885	42015886	rs12201437	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	6p21.1	CCND3	rs12201437-T	0.127271	4E-19		0.030174328	[0.024-0.037] unit increase	Affymetrix [93095623] (imputed)	N
905	chr6	42016245	42016246	rs10456506	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	6p21.1		rs10456506-C	NR	3E-26		0.0313	[0.026-0.037] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
905	chr6	42016245	42016246	rs10456506	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p21.1	CCND3	rs10456506-C	0.127487	1E-10		0.021319386	[0.015-0.028] unit increase	Affymetrix [93095623] (imputed)	N
905	chr6	42016245	42016246	rs10456506	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	6p21.1	NR	rs10456506-C	0.124426	5E-12		0.019178	[0.014-0.025] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
905	chr6	42023618	42023618	rs142602868	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	6p21.1	TAF8	rs142602868-ATAC	0.127457	5E-9		0.019502291	[0.013-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
905	chr6	42023618	42023618	rs142602868	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	6p21.1	TAF8	rs142602868-ATAC	0.127479	2E-14		0.02544793	[0.019-0.032] unit increase	Affymetrix [93095623] (imputed)	N
905	chr6	42024284	42024285	rs10948011	31624269	Terao C	2019-10-17	Nat Commun	GWAS of mosaic loss of chromosome Y highlights genetic effects on blood cell differentiation.	Mosaic loss of chromosome Y (Y chromosome dosage)	95,380 Japanese men	NA	6p21.1	TAF8	rs10948011-A	0.23	4E-12		0.035	NR unit increase	Illumina [9591901] (imputed)	N
905	chr6	42024284	42024285	rs10948011	31624269	Terao C	2019-10-17	Nat Commun	GWAS of mosaic loss of chromosome Y highlights genetic effects on blood cell differentiation.	Mosaic loss of chromosome Y (Y chromosome dosage)	205,011 men	NA	6p21.1	TAF8	rs10948011-G	0.87	9E-36		0.022	unit increase	NR [NR]	N
905	chr6	42024633	42024634	rs74526869	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p21.1	NR	rs74526869-A	0.137543	2E-34				Affymetrix, Illumina [23472807] (imputed)	N
905	chr6	42024633	42024634	rs74526869	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	6p21.1	NR	rs74526869-A	0.125385	4E-34		0.034829	[0.029-0.04] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
905	chr6	42025544	42025545	rs6917738	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.1	TAF8	rs6917738-C	0.127853	2E-32		0.03913242	[0.033-0.046] unit increase	Affymetrix [93095623] (imputed)	N
905	chr6	42025544	42025545	rs6917738	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p21.1	NR	rs6917738-C	0.146687	3E-11				Affymetrix, Illumina [24588908] (imputed)	N
905	chr6	42037347	42037348	rs12201698	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	6p21.1		rs12201698-?	NR	8E-10				NR [~ 8900000] (imputed)	N
905	chr6	42053777	42053778	rs2492935	33491795	Timmer T	2021-01-25	Vox Sang	Genetic determinants of ferritin, haemoglobin levels and haemoglobin trajectories: results from Donor InSight.	Hemoglobin levels	2,649 European ancestry individuals	NA	6p21.1	TAF8	rs2492935-A	0.248	1E-7		0.1	[0.06-0.14] unit increase	Affymetrix [7435577] (imputed)	N
905	chr6	42054345	42054346	rs2492937	24529757	Xie T	2014-01-17	Neurobiol Aging	Genome-wide association study combining pathway analysis for typical sporadic amyotrophic lateral sclerosis in Chinese Han populations.	Amyotrophic lateral sclerosis (sporadic)	250 Han Chinese ancestry cases, 250 Han Chinese ancestry controls	NA	6p21.1	C6orf132	rs2492937-?		6E-6				Illumina [859311]	N
905	chr6	42054831	42054832	rs12524651	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	6p21.1		rs12524651-?	NR	9E-17				NR [~ 8900000] (imputed)	N
905	chr6	42056005	42056006	rs79661299	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	6p21.1	NR	rs79661299-?	NR	1E-6	(EA)	18.436583	[11.1-25.78] unit decrease	Affymetrix [at least 600000] (imputed)	N
906	chr6	42115254	42115255	rs186757318	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	6p21.1		rs186757318-?	NR	6E-14				NR [~ 8900000] (imputed)	N
906	chr6	42128843	42128844	rs11752636	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		GUCA1A	rs11752636-?	NR	6E-10	(male)	1.83318	[NR] unit decrease	Affymetrix [NR] (imputed)	N
906	chr6	42128843	42128844	rs11752636	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		GUCA1A	rs11752636-?	NR	2E-13		1.67479	[NR] unit decrease	Affymetrix [NR] (imputed)	N
906	chr6	42134408	42134409	rs13203733	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Spatial processing	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	6p21.1	GUCA1A	rs13203733-T	NR	5E-6		0.114051595	[0.06-0.168] unit decrease	Illumina [> 6200000] (imputed)	N
906	chr6	42197706	42197707	rs61612642	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	6p21.1		rs61612642-T	NR	7E-24		0.0241	[0.019-0.029] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
906	chr6	42197706	42197707	rs61612642	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.1		rs61612642-C	0.836	2E-11				Affymetrix [10369434] (imputed)	N
906	chr6	42197706	42197707	rs61612642	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	6p21.1	TRERF1	rs61612642-T	0.164581	1E-35		0.03731863	[0.031-0.043] unit increase	Affymetrix [93095623] (imputed)	N
906	chr6	42197706	42197707	rs61612642	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6p21.1	TRERF1	rs61612642-T	0.164581	4E-39		0.03920175	[0.033-0.045] unit increase	Affymetrix [93095623] (imputed)	N
906	chr6	42197706	42197707	rs61612642	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p21.1	NR	rs61612642-T	0.167625	3E-40				Affymetrix, Illumina [19872809] (imputed)	N
906	chr6	42197706	42197707	rs61612642	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	6p21.1	NR	rs61612642-T	0.165037	5E-44		0.03751	[0.032-0.043] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
906	chr6	42197706	42197707	rs61612642	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	6p21.1		rs61612642-?	NR	1E-32				NR [~ 8900000] (imputed)	N
906	chr6	42197706	42197707	rs61612642	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	6p21.1	TRERF1	rs61612642-T	0.1662	2E-9		0.02925969	[0.02-0.039] unit increase	Affymetrix [~ 2500000] (imputed)	N
906	chr6	42197706	42197707	rs61612642	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	6p21.1	TRERF1	rs61612642-T	0.1662	2E-10		0.03065353	[0.021-0.04] unit increase	Affymetrix [~ 2500000] (imputed)	N
906	chr6	42197706	42197707	rs61612642	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	6p21.1	TRERF1	rs61612642-T	0.1662	4E-9		0.02859207	[0.019-0.038] unit increase	Affymetrix [~ 2500000] (imputed)	N
906	chr6	42197706	42197707	rs61612642	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	6p21.1	TRERF1	rs61612642-T	0.1662	1E-10		0.03114695	[0.022-0.041] unit increase	Affymetrix [~ 2500000] (imputed)	N
907	chr6	42232508	42232509	rs61758087	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	6p21.1	TRERF1	rs61758087-C	0.012894	3E-11		0.06545204	[0.046-0.085] unit decrease	Affymetrix [93095623] (imputed)	N
907	chr6	42245640	42245641	rs200274960	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Chickenpox	107,769 European ancestry cases, 15,982 European ancestry controls	NA	6p21.1	NR	rs200274960-?	NR	5E-6		0.2133	[0.12-0.3] unit increase	Illumina [at least 560000] (imputed)	N
907	chr6	42282392	42282393	rs4714598	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	6p21.1	TRERF1	rs4714598-G	0.3562	5E-10		0.02329535	[0.016-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
907	chr6	42284096	42284097	rs77522	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	6p21.1	NR	rs77522-G	0.689647	9E-10		0.0126726	[0.0086-0.0167] unit increase	NR [NR]	N
907	chr6	42284471	42284472	rs523676	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	6p21.1	TRERF1	rs523676-A	0.306854	3E-9		0.014283734	[0.0096-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
907	chr6	42284604	42284605	rs694083	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	6p21.1		rs694083-?	NR	6E-8				NR [~ 8900000] (imputed)	N
907	chr6	42285814	42285815	rs4714599	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	6p21.1	TRERF1	rs4714599-C	0.31057	2E-26		0.025742464	[0.021-0.03] unit increase	Affymetrix [93095623] (imputed)	N
907	chr6	42285814	42285815	rs4714599	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6p21.1	TRERF1	rs4714599-C	0.310547	9E-18		0.020784583	[0.016-0.026] unit increase	Affymetrix [93095623] (imputed)	N
907	chr6	42285814	42285815	rs4714599	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	6p21.1	TRERF1	rs4714599-C	0.3088	3E-10		0.02490613	[0.017-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
907	chr6	42285814	42285815	rs4714599	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	6p21.1	TRERF1	rs4714599-C	0.3089	9E-10		0.02427585	[0.017-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
908	chr6	42360454	42360455	rs72857666	32999390	Trajanoska K	2020-09-30	Commun Biol	Genetic basis of falling risk susceptibility in the UK Biobank Study.	Falling risk	89,076 European ancestry cases, 362,103 European ancestry controls	2,215 cases, 6289 controls	6p21.1	TRERF1	rs72857666-T	0.03	3E-7		1.07	[1.04-1.09]	Affymetrix [7745390] (imputed)	N
909	chr6	42481992	42481993	rs6921029	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum total protein level	113,509 Japanese ancestry individuals	NA	6p21.1	TRERF1, UBR2	rs6921029-?	NR	4E-9		0.02708	[0.018-0.036] unit decrease novel	Illumina [6108953] (imputed)	N
909	chr6	42491660	42491661	rs186380042	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6p21.1		rs186380042-C	0.20194	7E-12		0.019036857	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
909	chr6	42495277	42495278	rs16895812	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6p21.1	UBR2	rs16895812-G	0.181	3E-6	(NEFA )	0.03	[NR] mmol/L increase	Illumina [899892]	N
909	chr6	42500870	42500871	rs11758377	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	6p21.1		rs11758377-A	NR	5E-11		0.017	[0.012-0.022] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
909	chr6	42500870	42500871	rs11758377	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	6p21.1		rs11758377-A	NR	1E-21		0.026	[0.021-0.031] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
909	chr6	42500870	42500871	rs11758377	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	6p21.1		rs11758377-A	0.20617	9E-24		0.02746901	[0.022-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
909	chr6	42501161	42501162	rs11758943	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	6p21.1		rs11758943-C	0.208508	1E-23		0.027292458	[0.022-0.033] unit increase	Affymetrix [93095623] (imputed)	N
909	chr6	42501161	42501162	rs11758943	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	6p21.1		rs11758943-C	0.208495	2E-11		0.018175133	[0.013-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
909	chr6	42509043	42509043	rs80245932	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p21.1	NR	rs80245932-CA	0.210259	3E-19		0.024303637	[0.019-0.03] unit increase	Affymetrix [93095623] (imputed)	N
909	chr6	42509043	42509043	rs80245932	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	6p21.1		rs80245932-CA	0.210264	5E-30		0.03095502	[0.026-0.036] unit increase	Affymetrix [93095623] (imputed)	N
909	chr6	42510304	42510305	rs10948036	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p21.1	NR	rs10948036-A	0.190908	5E-22				Affymetrix, Illumina [24649327] (imputed)	N
909	chr6	42510304	42510305	rs10948036	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	6p21.1	NR	rs10948036-A	0.210406	2E-24		0.023061	[0.019-0.027] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
909	chr6	42510304	42510305	rs10948036	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p21.1	NR	rs10948036-A	0.197854	7E-35				Affymetrix, Illumina [23114412] (imputed)	N
909	chr6	42510304	42510305	rs10948036	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	6p21.1	NR	rs10948036-A	0.210175	3E-36		0.029687	[0.025-0.034] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
909	chr6	42510601	42510602	rs77940566	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	6p21.1		rs77940566-?	NR	4E-14				NR [~ 8900000] (imputed)	N
909	chr6	42510601	42510602	rs77940566	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	6p21.1		rs77940566-?	NR	9E-14				NR [~ 8900000] (imputed)	N
909	chr6	42515790	42515791	rs16895831	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	6p21.1		rs16895831-T	0.202298	3E-25		0.028837333	[0.023-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
909	chr6	42515790	42515791	rs16895831	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	6p21.1	intergenic	rs16895831-T	0.2033	7E-9		0.02596701	[0.017-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
909	chr6	42515790	42515791	rs16895831	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	6p21.1	intergenic	rs16895831-T	0.2032	3E-10		0.02842457	[0.02-0.037] unit increase	Affymetrix [~ 2500000] (imputed)	N
909	chr6	42515790	42515791	rs16895831	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	6p21.1	intergenic	rs16895831-T	0.2033	2E-10		0.02848855	[0.02-0.037] unit increase	Affymetrix [~ 2500000] (imputed)	N
909	chr6	42515790	42515791	rs16895831	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	6p21.1	intergenic	rs16895831-T	0.2032	2E-12		0.0315432	[0.023-0.04] unit increase	Affymetrix [~ 2500000] (imputed)	N
909	chr6	42515790	42515791	rs16895831	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	6p21.1	intergenic	rs16895831-T	0.2033	1E-10		0.02879943	[0.02-0.038] unit increase	Affymetrix [~ 2500000] (imputed)	N
909	chr6	42515790	42515791	rs16895831	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	6p21.1	intergenic	rs16895831-T	0.2033	3E-10		0.02809162	[0.019-0.037] unit decrease	Affymetrix [~ 2500000] (imputed)	N
909	chr6	42515790	42515791	rs16895831	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	6p21.1	intergenic	rs16895831-T	0.2033	7E-12		0.0306608	[0.022-0.039] unit increase	Affymetrix [~ 2500000] (imputed)	N
909	chr6	42515790	42515791	rs16895831	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	6p21.1	intergenic	rs16895831-T	0.2033	3E-12		0.0312655	[0.023-0.04] unit decrease	Affymetrix [~ 2500000] (imputed)	N
909	chr6	42515790	42515791	rs16895831	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	6p21.1	intergenic	rs16895831-T	0.2032	1E-13		0.03316487	[0.024-0.042] unit decrease	Affymetrix [~ 2500000] (imputed)	N
909	chr6	42527901	42527902	rs9394908	33109212	Chang H	2020-10-28	BMC Med	Genetic architecture of cardiometabolic risks in people living with HIV.	HDL cholesterol levels in HIV infection	3,095 European ancestry individuals, 3,189 African American individuals	NA	6p21.1	TRERF1, UBR2	rs9394908-?		9E-7	(African American)	0.118978254	[0.072-0.166] unit increase	Illumina [13620258] (imputed)	N
909	chr6	42532101	42532102	rs3749897	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	6p21.1		rs3749897-T	NR	9E-9		0.0109	[0.0072-0.0146] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
909	chr6	42561971	42561972	rs9381199	24665060	Argos M	2014-03-24	J Med Genet	Genome-wide association study of smoking behaviours among Bangladeshi adults.	Smoking initiation	754 Bangladeshi ancestry never smoker males, 2,565 Bangladeshi ancestry never smoker females, 1,837 Bangladeshi ancestry ever smoker males, 198 Bangladeshi ancestry ever smoker females	NA	6p21.1	NR	rs9381199-?		2E-6	(females)			Illumina [1211988] (imputed)	N
909	chr6	42593717	42593718	rs10755723	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in never smokers	2,355 European ancestry cases,  7,504 European ancestry controls	NA	6p21.1	UBR2	rs10755723-T	0.250839342	3E-6		1.2163181	[1.120171875-1.320716736]	Illumina [10439017] (imputed)	N
910	chr6	42643095	42643096	rs6905989	33109212	Chang H	2020-10-28	BMC Med	Genetic architecture of cardiometabolic risks in people living with HIV.	HDL cholesterol levels in HIV infection	3,095 European ancestry individuals, 3,189 African American individuals	NA	6p21.1	UBR2	rs6905989-?		2E-6	(African American)	0.1262191	[0.074-0.179] unit increase	Illumina [13620258] (imputed)	N
910	chr6	42673014	42673015	rs649472	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	6p21.1	PRPH2	rs649472-T		5E-6	(EA)	0.203	unit increase	Affymetrix [at least 2696785] (imputed)	N
910	chr6	42673014	42673015	rs649472	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	6p21.1	PRPH2	rs649472-T		4E-6		0.186	unit increase	Affymetrix [at least 2696785] (imputed)	N
910	chr6	42673014	42673015	rs649472	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	6p21.1	PRPH2	rs649472-T		1E-8		0.161	unit increase	Affymetrix [at least 2696785] (imputed)	N
910	chr6	42673677	42673678	rs9296398	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6p21.1	NR	rs9296398-?	NR	4E-9				Affymetrix [~ 8270000] (imputed)	N
910	chr6	42673677	42673678	rs9296398	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	6p21.1		rs9296398-?	NR	5E-10				NR [~ 8900000] (imputed)	N
910	chr6	42677833	42677834	rs6931385	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	6p21.1	NA	rs6931385-A	0.4815	6E-11		0.0111	[0.0078-0.0144] unit increase	NR [~ 27400000] (imputed)	N
911	chr6	42731114	42731115	rs6458307	17554300	Wellcome Trust Case Control Consortium	2007-06-07	Nature	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Bipolar disorder	1,868 European ancestry cases, 2,938 European ancestry controls	NA	6p21.1	NR	rs6458307-?	0.69	4E-6		1.19	[1.04-1.33]	Affymetrix [469557]	N
911	chr6	42840317	42840318	rs9471935	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	6p21.1		rs9471935-G	0.775	1E-10		0.009	[0.007-0.011] unit decrease	NR [NR] (imputed)	N
911	chr6	42840317	42840318	rs9471935	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	6p21.1	NR	rs9471935-A	0.228	3E-8		0.00716977	[0.0046-0.0097] unit increase	NR [9732723] (imputed)	N
912	chr6	42861580	42861581	rs9462846	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.1	PTCRA, RPL7L1, C6orf226, GLTSCR1L, CNPY3	rs9462846-C	0.2592965	8E-11	(EA, Mediator of RNA polymerase II transcription subunit 1)	0.3261	[0.23-0.42] unit increase	Affymetrix [509946]	N
912	chr6	42861745	42861746	rs4714633	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	6p21.1	C6orf226	rs4714633-T	0.73075	2E-23		0.025267225	[0.02-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
912	chr6	42861745	42861746	rs4714633	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p21.1	NR	rs4714633-A	0.263328	4E-28				Affymetrix, Illumina [17210439] (imputed)	N
912	chr6	42861745	42861746	rs4714633	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	6p21.1	NR	rs4714633-A	0.268042	4E-31		0.025301	[0.021-0.03] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
912	chr6	42873244	42873245	rs9394931	24823311	Guan W	2014-05-13	Circ Cardiovasc Genet	Genome-wide association study of plasma N6 polyunsaturated fatty acids within the cohorts for heart and aging research in genomic epidemiology consortium.	Plasma omega-6 polyunsaturated fatty acid levels (arachidonic acid)	8,631 European ancestry individuals	NA	6p21.1	PTCRA, RPL7L1	rs9394931-T	0.41	2E-6		0.15	[NR] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
912	chr6	42877387	42877388	rs140196622	32141793	Garman L	2020-03-06	Ocul Immunol Inflamm	Genome-Wide Association Study of Ocular Sarcoidosis Confirms HLA Associations and Implicates Barrier Function and Autoimmunity in African Americans.	Ocular sarcoidosis	260 African American cases, 1,551 African American controls	NA	6p21.1	NR	rs140196622-T	NR	5E-6		2.631	[1.74-3.98]	Illumina [13976150] (imputed)	N
912	chr6	42901119	42901120	rs4714634	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Entorhinal cortical volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	6p21.1	CNPY3	rs4714634-?		2E-6				Illumina [4322238] (imputed)	N
912	chr6	42902507	42902508	rs3763236	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	6p21.1	CNPY3	rs3763236-T	0.490928	8E-15		0.0147886	[0.011-0.019] unit decrease	Affymetrix [NR] (imputed)	N
912	chr6	42905234	42905235	rs9471968	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in IDL	115,082 European ancestry individuals	NA	6p21.1		rs9471968-A	0.453878	3E-9		0.0247134	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
912	chr6	42907326	42907327	rs9462852	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GNMT	5,363 Icelandic ancestry individuals	NA	6p21.1		rs9462852-T	0.06188	1E-28		0.436113	[0.36-0.51] unit decrease	Illumina [7506463] (imputed)	N
912	chr6	42907326	42907327	rs9462852	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	6p21.1	NR	rs9462852-T	NR	1E-10		0.0317	[0.022-0.041] unit decrease	Affymetrix [9000000] (imputed)	N
912	chr6	42907326	42907327	rs9462852	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	6p21.1	NR	rs9462852-T	NR	2E-9		0.0311	[0.021-0.041] unit increase	Affymetrix [9000000] (imputed)	N
912	chr6	42912588	42912589	rs6927188	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	6p21.1		rs6927188-?	NR	1E-7				NR [~ 8900000] (imputed)	N
912	chr6	42912588	42912589	rs6927188	26305897	Iyengar SK	2015-08-25	PLoS Genet	Genome-Wide Association and Trans-ethnic Meta-Analysis for Advanced Diabetic Kidney Disease: Family Investigation of Nephropathy and Diabetes (FIND).	Diabetic kidney disease	up to 1,564 African American cases, 369  African American diabetic controls, 1,288 African American non-diabetic controls, 538 American Indian ancestry cases, 319 American Indian ancestry diabetic controls, 342 European ancestry cases, 404 European ancestry diabetic controls, 779 Mexican ancestry cases, 594 Mexican ancestry diabetic controls	NA	6p21.1	NR	rs6927188-?	NR	6E-6	(additive)	1.3513513	[1.18-1.54]	Affymetrix [NR]	N
912	chr6	42915020	42915021	rs9471972	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium HDL	115,082 European ancestry individuals	NA	6p21.1		rs9471972-G	0.463813	2E-13		0.0281151	[0.021-0.036] unit decrease	NR [11722792] (imputed)	N
912	chr6	42915020	42915021	rs9471972	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6p21.1		rs9471972-G	0.463813	2E-9		0.024244	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
912	chr6	42915020	42915021	rs9471972	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium HDL	115,082 European ancestry individuals	NA	6p21.1		rs9471972-G	0.463813	3E-14		0.0293894	[0.022-0.037] unit decrease	NR [11722792] (imputed)	N
912	chr6	42915020	42915021	rs9471972	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in HDL	115,082 European ancestry individuals	NA	6p21.1		rs9471972-G	0.463813	7E-11		0.0243703	[0.017-0.032] unit decrease	NR [11722792] (imputed)	N
912	chr6	42915020	42915021	rs9471972	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium HDL particles	115,082 European ancestry individuals	NA	6p21.1		rs9471972-G	0.463813	2E-12		0.0268591	[0.019-0.034] unit decrease	NR [11722792] (imputed)	N
912	chr6	42915020	42915021	rs9471972	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein A1 levels	115,082 European ancestry individuals	NA	6p21.1		rs9471972-G	0.463813	5E-10		0.0235282	[0.016-0.031] unit decrease	NR [11722792] (imputed)	N
912	chr6	42915020	42915021	rs9471972	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	6p21.1	CNPY3	rs9471972-G	0.46484	2E-42		0.0269155	[0.023-0.031] unit decrease	Affymetrix [NR] (imputed)	N
912	chr6	42917016	42917017	rs4714638	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	6p21.1		rs4714638-G	NR	3E-9		0.013	[0.0087-0.0173] unit decrease	Affymetrix, Illumina [20521447] (imputed)	N
912	chr6	42919221	42919222	rs9471975	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	6p21.1		rs9471975-T	0.416609	2E-15		0.0319999	[0.024-0.04] unit decrease	NR [11722792] (imputed)	N
912	chr6	42919221	42919222	rs9471975	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small LDL	115,082 European ancestry individuals	NA	6p21.1		rs9471975-T	0.416609	2E-9		0.0250404	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
912	chr6	42919221	42919222	rs9471975	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	6p21.1		rs9471975-T	0.416609	2E-11		0.0265661	[0.019-0.034] unit increase	NR [11722792] (imputed)	N
912	chr6	42919221	42919222	rs9471975	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	6p21.1	GNMT	rs9471975-T	0.417204	1E-9		0.012882	[0.0087-0.017] unit increase	Affymetrix [NR] (imputed)	N
912	chr6	42919221	42919222	rs9471975	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	6p21.1	GNMT	rs9471975-T	0.417314	3E-21		0.0199706	[0.016-0.024] unit increase	Affymetrix [NR] (imputed)	N
912	chr6	42919968	42919969	rs2104616	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of apolipoprotein B to apolipoprotein A1 levels	115,082 European ancestry individuals	NA	6p21.1		rs2104616-T	0.459906	4E-12		0.0282733	[0.02-0.036] unit increase	NR [11722792] (imputed)	N
912	chr6	42920419	42920419	rs397726257	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	6p21.1		rs397726257-AC	NR	1E-16		0.0166	[0.013-0.021] unit decrease	Affymetrix, Illumina [20535842] (imputed)	N
912	chr6	42921487	42921488	rs57736976	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.1	GNMT	rs57736976-T	0.572	2E-56	(Glycine N-methyltransferase, GNMT.14006.36.3)	0.38	[0.34-0.42] unit decrease	Affymetrix [10572788] (imputed)	N
912	chr6	42922214	42922215	rs6458314	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GNMT	5,363 Icelandic ancestry individuals	NA	6p21.1		rs6458314-C	0.3586	4E-98		0.392279	[0.36-0.43] unit increase	Illumina [7506463] (imputed)	N
912	chr6	42924695	42924695	rs796736099	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of HDL particles	115,082 European ancestry individuals	NA	6p21.1		rs796736099-AT,rs796736099-AT	0.545578	1E-8		0.0223967	[0.015-0.03] unit decrease	NR [11722792] (imputed)	N
912	chr6	42924695	42924695	rs796736099	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of HDL particles	115,082 European ancestry individuals	NA	6p21.1		rs796736099-AT,rs796736099-AT	0.545578	1E-8		0.0223967	[0.015-0.03] unit decrease	NR [11722792] (imputed)	N
912	chr6	42925802	42925803	rs9296404	24651765	Williams SR	2014-03-20	PLoS Genet	Genome-wide meta-analysis of homocysteine and methionine metabolism identifies five one carbon metabolism loci and a novel association of ALDH1L1 with ischemic stroke.	Plasma homocysteine levels (post-methionine load test)	2,710 European and other ancestry individuals, 1,725 European ancestry individuals, 258 African ancestry individuals, 117 individuals	NA	6p21.1	GNMT	rs9296404-T	0.48	2E-63		0.356	[0.31-0.41] unit increase	Affymetrix, Illumina [up to 11000000] (imputed)	N
912	chr6	42928460	42928461	rs10948059	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.1	NR	rs10948059-C	NR	8E-9		0.02	unit decrease	Affymetrix [at least 7091467] (imputed)	N
912	chr6	42928460	42928461	rs10948059	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.1	NR	rs10948059-C	0.523	1E-9	(EA)	0.023	unit decrease	Affymetrix [at least 7091467] (imputed)	N
912	chr6	42932199	42932200	rs1129187	25778476	Jun G	2015-03-17	Mol Psychiatry	A novel Alzheimer disease locus located near the gene encoding tau protein.	Alzheimer's disease in APOE e4+ carriers	10,352 cases, 9,207 controls	1,250 European ancestry cases, 536 European ancestry controls	6p21.1	PEX6	rs1129187-T	0.45	7E-6		1.13	[1.07-1.19]	NR [NR]	N
912	chr6	42932201	42932202	rs1129186	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.1	NR	rs1129186-C	0.4146	2E-16	(GNMT)	0.401	NR unit increase	Illumina [1671387] (imputed)	N
912	chr6	42940672	42940673	rs2395943	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small HDL	115,082 European ancestry individuals	NA	6p21.1		rs2395943-A	0.411559	1E-9		0.0251217	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
912	chr6	42940672	42940673	rs2395943	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	6p21.1	NR	rs2395943-G	NR	9E-17		0.0203	[0.016-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
912	chr6	42940672	42940673	rs2395943	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	6p21.1	NR	rs2395943-G	NR	5E-10		0.0152	[0.01-0.02] unit decrease	Affymetrix [9000000] (imputed)	N
912	chr6	42940672	42940673	rs2395943	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	6p21.1	NR	rs2395943-G	NR	6E-17		0.0213	[0.016-0.026] unit increase	Affymetrix [9000000] (imputed)	N
912	chr6	42940672	42940673	rs2395943	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	6p21.1	NR	rs2395943-G	NR	5E-12		0.0169	[0.012-0.022] unit increase	Affymetrix [9000000] (imputed)	N
912	chr6	42940672	42940673	rs2395943	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	6p21.1	NR	rs2395943-G	NR	2E-19		0.022	[0.017-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
912	chr6	42940672	42940673	rs2395943	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	6p21.1	NR	rs2395943-G	NR	6E-28		0.028	[0.023-0.033] unit increase	Affymetrix [9000000] (imputed)	N
912	chr6	42940672	42940673	rs2395943	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	6p21.1	NR	rs2395943-G	NR	1E-10		0.0157	[0.011-0.02] unit decrease	Affymetrix [9000000] (imputed)	N
912	chr6	42940672	42940673	rs2395943	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	6p21.1	PEX6	rs2395943-G	0.587907	1E-9		0.01356843	[0.0092-0.018] unit decrease	Affymetrix [93095623] (imputed)	N
912	chr6	42940672	42940673	rs2395943	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.1	NR	rs2395943-A	0.3415	7E-20	(GNMT)	0.4592	NR unit increase	Illumina [1671387] (imputed)	N
912	chr6	42940809	42940810	rs9296406	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	6p21.1	PEX6	rs9296406-C	0.540519	2E-11		0.015030522	[0.011-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
912	chr6	42944139	42944140	rs9471987	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.1	GNMT	rs9471987-A	0.40234375	2E-61	(GNMT, 14006_36_3)	0.40047273	[0.35-0.45] unit increase	Illumina [> 1000000] (imputed)	N
912	chr6	42947190	42947191	rs41274896	31251335	Turpin W	2019-10-01	Inflamm Bowel Dis	Analysis of Genetic Association of Intestinal Permeability in Healthy First-degree Relatives of Patients with Crohn's Disease.	Intestinal permeability measurement	1,075 European ancestry first-degree relatives of Crohn's disease patients	NA		PEX6/MEA1/RP3-475N16.1/RPL24P4	rs41274896-G	0.05	9E-6		0.11	[0.071-0.149] unit decrease	Illumina [3700000] (imputed)	N
912	chr6	42955748	42955749	rs3805946	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.1	NR	rs3805946-C	0.4983	6E-11	(GNMT)	0.3072	NR unit decrease	Illumina [1671387] (imputed)	N
913	chr6	42995996	42995997	rs147649290	32141793	Garman L	2020-03-06	Ocul Immunol Inflamm	Genome-Wide Association Study of Ocular Sarcoidosis Confirms HLA Associations and Implicates Barrier Function and Autoimmunity in African Americans.	Ocular sarcoidosis	260 African American cases, 1,551 African American controls	NA	6p21.1	NR	rs147649290-A	NR	2E-6		2.655	[1.78-3.96]	Illumina [13976150] (imputed)	N
913	chr6	43002720	43002721	rs7762731	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	6p21.1	CUL7	rs7762731-A	0.8604	4E-11		0.018	[0.013-0.023] unit increase	Affymetrix [18391927] (imputed)	N
913	chr6	43002720	43002721	rs7762731	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6p21.1		rs7762731-?	NR	2E-22				NR [~ 8900000] (imputed)	N
913	chr6	43029287	43029288	rs11558979	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p21.1	KLC4	rs11558979-A		1E-9		0.036	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
913	chr6	43068369	43068370	rs1034246	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	6p21.1	PTK7	rs1034246-T	0.255	6E-8		0.04	[0.026-0.054] unit decrease	Affymetrix [7947838] (imputed)	N
913	chr6	43075753	43075756	rs71779653	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Vascular endothelial growth factor levels	7,118 Finnish ancestry individuals	NA	6p21.1	NR	rs71779653-GATT		2E-6		0.0955	[0.056-0.135] SD units increase	NR [10700000] (imputed)	N
913	chr6	43096198	43096199	rs1537638	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6p21.1	NR	rs1537638-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
913	chr6	43099606	43099607	rs45604140	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	6p21.1	NR	rs45604140-C	NR	7E-6	(LME model)	0.65899	[0.37-0.95] unit decrease	NR [NR] (imputed)	N
913	chr6	43101269	43101270	rs4714668	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	6p21.1	NA	rs4714668-C	0.5295	3E-9		0.0117	[0.0078-0.0156] unit decrease	NR [~ 27400000] (imputed)	N
913	chr6	43115219	43115220	rs3828755	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	6p21.1		rs3828755-?	NR	2E-9				NR [~ 8900000] (imputed)	N
913	chr6	43122010	43122011	rs143115481	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	6p21.1		rs143115481-T	NR	1E-9		0.0637	[0.043-0.084] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
913	chr6	43122010	43122011	rs143115481	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	145,515 East Asian ancestry individuals	NA	6p21.1		rs143115481-T	0.033014	1E-9		0.0636817	[0.043-0.084] unit increase	Illumina [13477770] (imputed)	N
914	chr6	43152572	43152573	rs9472022	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	6p21.1	NR	rs9472022-A	0.122266	4E-10		0.06751803	[0.046-0.089] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
914	chr6	43153786	43153787	rs61743561	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6p21.1	CUL9	rs61743561-A	0.0050	9E-6	(TBF-b1 )	0.03	[NR] pg/mL increase	Illumina [899892]	N
914	chr6	43156159	43156160	rs10498754	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	6p21.1		rs10498754-A	0.09	7E-9		5.79	z score increase	Affymetrix [9061022] (imputed)	N
914	chr6	43156159	43156160	rs10498754	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	6p21.1		rs10498754-A	0.09	1E-10		6.45	z score increase	Affymetrix [9061022] (imputed)	N
914	chr6	43156159	43156160	rs10498754	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	6p21.1		rs10498754-A	0.09	5E-8		5.47	z score increase	Affymetrix [9061022] (imputed)	N
914	chr6	43156159	43156160	rs10498754	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	6p21.1	NR	rs10498754-A	0.0777	3E-10				NR [9056863] (imputed)	N
914	chr6	43156159	43156160	rs10498754	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	6p21.1	CUL9	rs10498754-A	0.086	2E-8		0.0119	[0.0078-0.016] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
914	chr6	43160374	43160375	rs113113059	30846698	Dashti HS	2019-03-07	Nat Commun	Genome-wide association study identifies genetic loci for self-reported habitual sleep duration supported by accelerometer-derived estimates.	Sleep duration	446,118 European ancestry individuals	47,180  adults, 10,554 children or adolescents	6p21.1	NR	rs113113059-T	NR	8E-8		0.828	unit increase	Affymetrix [14661600] (imputed)	N
914	chr6	43185732	43185733	rs6938026	32332799	Song W	2020-04-24	Sci Rep	Genome-wide association analysis of insomnia using data from Partners Biobank.	Insomnia	404,588 European ancestry individuals, 17,651 European, Hispanic and African ancestry individuals	NA	6p21.1	CUL9:RP3-330M21.5	rs6938026-G	0.173	3E-10				Illumina [5508534] (imputed)	N
914	chr6	43185732	43185733	rs6938026	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	6p21.1	NR	rs6938026-?	NR	5E-9		1.06046	[1.04-1.08]	Affymetrix, Illumina [12447948] (imputed)	N
914	chr6	43186137	43186138	rs144767533	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Tea consumption	336,898 European ancestry individuals	39,924 European ancestry individuals	6p21.1	CUL9	rs144767533-T	0.8874	3E-6		0.0112	[0.0065-0.0159] unit increase	Affymetrix [~ 7740000] (imputed)	N
914	chr6	43187525	43187526	rs73736735	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	6p21.1		rs73736735-?	NR	6E-9				NR [~ 8900000] (imputed)	N
914	chr6	43188715	43188716	rs2756178	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.1	CUL9, RP3-330M21.5	rs2756178-A	NR	2E-8		0.0158815	[0.01-0.021] unit decrease	Affymetrix [319769] (imputed)	N
914	chr6	43193317	43193318	rs115842765	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	6p21.1	NR	rs115842765-?	NR	3E-6				Affymetrix [5486770] (imputed)	N
914	chr6	43205362	43205363	rs75591122	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Automobile speeding propensity	404,291 European ancestry individuals	NA	6p21.1	TTBK1	rs75591122-T	0.0906	3E-8		0.021788182	[0.014-0.029] unit increase	Affymetrix [11514463] (imputed)	N
914	chr6	43212492	43212493	rs2651205	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6p21.1	NR	rs2651205-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
914	chr6	43227140	43227141	rs111342015	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p21.1	TTBK1	rs111342015-A	NR	3E-8		5.542	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
914	chr6	43227140	43227141	rs111342015	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p21.1	NR	rs111342015-A	0.098	9E-8	(EA)	0.0571	[0.036-0.078] unit decrease	Illumina [~ 11800000] (imputed)	N
914	chr6	43230103	43230105	rs145606348	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	6p21.1	TTBK1	rs145606348-G	0.136194	2E-13		0.023706563	[0.017-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
914	chr6	43233989	43233990	rs76187039	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	6p21.1	TTBK1	rs76187039-T	0.135567	3E-9		0.019361965	[0.013-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
914	chr6	43233989	43233990	rs76187039	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	6p21.1	TTBK1	rs76187039-G	0.865193	4E-8		0.0113078	[0.0073-0.0153] unit decrease	Affymetrix [12370749]	N
914	chr6	43233989	43233990	rs76187039	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	6p21.1		rs76187039-?	NR	6E-13				NR [~ 8900000] (imputed)	N
915	chr6	43259128	43259129	rs12207935	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.1	TTBK1	rs12207935-T	NR	6E-10		0.0339368	[0.023-0.045] unit decrease	Affymetrix [323123] (imputed)	N
915	chr6	43259301	43259302	rs66689022	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in non-diabetics	152,624 European ancestry individuals, 36,369 African American individuals	NA	6p21.1	TTBK1	rs66689022-T	0.855	2E-8		0.455	[0.3-0.61] unit increase	Affymetrix [NR] (imputed)	N
915	chr6	43261766	43261767	rs62415384	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Tyrosine levels	114,913 European ancestry individuals	NA	6p21.1		rs62415384-G	0.546726	2E-11		0.0286907	[0.02-0.037] unit decrease	NR [11722792] (imputed)	N
915	chr6	43261766	43261767	rs62415384	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	6p21.1	NR	rs62415384-G	0.548166	3E-8		0.0162801	[0.01-0.022] unit increase	Affymetrix [16577313] (imputed)	N
915	chr6	43262703	43262704	rs16896398	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	145,505 East Asian ancestry individuals	NA	6p21.1		rs16896398-T	0.346998	1E-12		0.0250122	[0.018-0.032] unit increase	Illumina [13477770] (imputed)	N
915	chr6	43262703	43262704	rs16896398	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	145,502 East Asian ancestry individuals	NA	6p21.1		rs16896398-T	0.347	9E-12		0.0246542	[0.018-0.032] unit increase	Illumina [13477767] (imputed)	N
915	chr6	43262703	43262704	rs16896398	32047268	von Berg J	2020-02-11	Eur J Hum Genet	Alternate approach to stroke phenotyping identifies a genetic risk locus for small vessel stroke.	Cardioembolic stroke (CCSc classification)	3,000 European and African ancestry cases, 28,026 European and unknown ancestry controls	NA	6p21.1	SLC22A7, ZNF318	rs16896398-?	NR	4E-6		1.0904044	[1.05-1.13]	Illumina [~ 10156805] (imputed)	N
915	chr6	43262703	43262704	rs16896398	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	6p21.1	SLC22A7	rs16896398-A	0.65	1E-10	(Japanese)	0.5167	[0.36-0.67] unit decrease	Illumina [6200000] (imputed)	N
915	chr6	43262703	43262704	rs16896398	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Pulse pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 Japanese ancestry individuals	6p21.1	SLC22A7	rs16896398-A	0.654	4E-6	(Japanese)	0.2574	[0.15-0.37] unit decrease	Illumina [6200000] (imputed)	N
915	chr6	43262703	43262704	rs16896398	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	6p21.1	SLC22A7	rs16896398-A	0.654	1E-9	(Japanese)	0.3467	[0.24-0.46] unit decrease	Illumina [6200000] (imputed)	N
915	chr6	43262703	43262704	rs16896398	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Hypertension	22,566 Japanese ancestry cases, 28,226 Japanese ancestry controls	8,809 East Asian ancestry cases, 13,663 East Asian ancestry controls, 105,253 European ancestry individuals	6p21.1	SLC22A7	rs16896398-A	0.654	1E-7	(Japanese)	0.0742	[0.047-0.101] unit decrease	Illumina [6200000] (imputed)	N
915	chr6	43262703	43262704	rs16896398	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	6p21.1	SLC22A7	rs16896398-A	0.654	3E-7	(Japanese)	0.2626	[0.16-0.36] unit decrease	Illumina [6200000] (imputed)	N
915	chr6	43262703	43262704	rs16896398	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Stroke	40,585 European ancestry cases, 406,111 European ancestry controls, 17,369 East Asian ancestry cases, 28,195 East Asian ancestry controls, 2,437 South Asian ancestry cases, 6,707 South Asian ancestry controls, 5,541 African American cases, 15,154 African American controls, 365 Asian ancestry cases, 333 Asian ancestry controls, 865 Latin American cases, 692 Latin American controls	NA	6p21.1	SLC22A7, ZNF318	rs16896398-?	NR	1E-8				NR [~ 8000000] (imputed)	N
915	chr6	43262703	43262704	rs16896398	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Stroke	40,585 European ancestry cases, 406,111 European ancestry controls	NA	6p21.1	SLC22A7, ZNF318	rs16896398-?	NR	9E-6				NR [~ 8000000] (imputed)	N
915	chr6	43262703	43262704	rs16896398	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Ischemic stroke	34,217 European ancestry cases, 406,111 European ancestry controls, 17,369 East Asian ancestry cases, 28,195 East Asian ancestry controls, 2,437 South Asian ancestry cases, 6,707 South Asian ancestry controls, 5,541 African American cases, 15,146 African American controls, 222 Asian ancestry cases, 333 Asian ancestry controls, 555 Latin American cases, 692 Latin American controls	NA	6p21.1	SLC22A7, ZNF318	rs16896398-?	NR	2E-6				NR [~ 8000000] (imputed)	N
915	chr6	43262703	43262704	rs16896398	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Systolic blood pressure	136,597 Japanese ancestry individuals	NA	6p21.1	TTBK1, SLC22A7	rs16896398-?	NR	9E-13		0.02913	[0.021-0.037] unit increase	Illumina [6108953] (imputed)	N
915	chr6	43262703	43262704	rs16896398	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean arterial pressure	136,482 Japanese ancestry individuals	NA	6p21.1	TTBK1, SLC22A7	rs16896398-?	NR	1E-11		0.02795	[0.02-0.036] unit increase novel	Illumina [6108953] (imputed)	N
915	chr6	43262703	43262704	rs16896398	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Diastolic blood pressure	136,615 Japanese ancestry individuals	NA	6p21.1	TTBK1, SLC22A7	rs16896398-?	NR	3E-8		0.02264	[0.015-0.031] unit increase	Illumina [6108953] (imputed)	N
915	chr6	43262928	43262929	rs1114357	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	6p21.1		rs1114357-T	0.285732602	2E-9		0.05456518	[0.037-0.072] unit increase	Illumina [13134967] (imputed)	N
915	chr6	43266633	43266634	rs70953677	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	6p21.1	NR	rs70953677-T	NR	2E-9		0.0472	[0.032-0.062] unit decrease	Affymetrix [9000000] (imputed)	N
915	chr6	43266633	43266634	rs70953677	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	6p21.1	NR	rs70953677-T	NR	2E-9		0.0472	[0.032-0.063] unit increase	Affymetrix [9000000] (imputed)	N
915	chr6	43267662	43267663	rs80308492	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Creatinine levels	437,660 European ancestry individuals	NA	6p21.1		rs80308492-?	NR	7E-35		0.416301	[0.35-0.48] unit increase	NR [9800000] (imputed)	N
915	chr6	43269028	43269029	rs1574430	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	6p21.1	SLC22A7	rs1574430-A	0.4051	3E-14		0.029394	[0.022-0.037] mg/dL increase	Affymetrix, Illumina [8217339] (imputed)	N
915	chr6	43269179	43269180	rs56401710	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	6p21.1	SLC22A7	rs56401710-A	0.5866	5E-30		0.0424	[0.035-0.05] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
915	chr6	43269179	43269180	rs56401710	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	6p21.1	NR	rs56401710-A	0.6053	5E-14	(men)	0.0446	[0.033-0.056] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
915	chr6	43269179	43269180	rs56401710	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	6p21.1	NR	rs56401710-A	0.6021	4E-10	(women)	0.0359	[0.025-0.047] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
915	chr6	43270150	43270151	rs2270860	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	6p21.1	SLC22A7	rs2270860-T	0.35	1E-10	(Japanese)	0.5027	[0.35-0.66] unit increase	Illumina [6200000] (imputed)	N
915	chr6	43270150	43270151	rs2270860	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Pulse pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 Japanese ancestry individuals	6p21.1	SLC22A7	rs2270860-T	0.3456	3E-6	(Japanese)	0.2543	[0.15-0.36] unit increase	Illumina [6200000] (imputed)	N
915	chr6	43270150	43270151	rs2270860	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	6p21.1	SLC22A7	rs2270860-T	0.3456	1E-9	(Japanese)	0.3351	[0.23-0.44] unit increase	Illumina [6200000] (imputed)	N
915	chr6	43270150	43270151	rs2270860	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Hypertension	22,566 Japanese ancestry cases, 28,226 Japanese ancestry controls	8,809 East Asian ancestry cases, 13,663 East Asian ancestry controls, 105,253 European ancestry individuals	6p21.1	SLC22A7	rs2270860-T	0.3456	2E-7	(Japanese)	0.0724	[0.045-0.1] unit increase	Illumina [6200000] (imputed)	N
915	chr6	43270150	43270151	rs2270860	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	6p21.1	SLC22A7	rs2270860-T	0.3456	5E-7	(Japanese)	0.252	[0.15-0.35] unit increase	Illumina [6200000] (imputed)	N
915	chr6	43270150	43270151	rs2270860	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure (cigarette smoking interaction)	80,552 European ancestry individuals, 27,118 African individuals, 13,438 Asian individuals, 8,805 Hispanic individuals	305,513 European ancestry individuals, 7,786 African individuals, 148,932 Asian individuals, 13,533 Hispanic individuals, 4,414 Brazilian individuals	6p21.1	SLC22A7	rs2270860-?	NR	8E-23				Affymetrix, Illumina [18800000] (imputed)	N
915	chr6	43270150	43270151	rs2270860	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure (cigarette smoking interaction)	80,552 European ancestry individuals, 27,118 African individuals, 13,438 Asian individuals, 8,805 Hispanic individuals	305,513 European ancestry individuals, 7,786 African individuals, 148,932 Asian individuals, 13,533 Hispanic individuals, 4,414 Brazilian individuals	6p21.1	SLC22A7	rs2270860-?		4E-11				Affymetrix, Illumina [18800000] (imputed)	N
915	chr6	43270150	43270151	rs2270860	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Systolic blood pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	154,543 European ancestry individuals, 26,183 South Asian ancestry individuals	6p21.1	SLC22A7	rs2270860-T	0.367	3E-11		0.32	[0.22-0.42] unit increase	Illumina [247039]	N
915	chr6	43270150	43270151	rs2270860	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Pulse pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	154,543 European ancestry individuals, 26,183 South Asian ancestry individuals	6p21.1	SLC22A7	rs2270860-T	0.367	5E-9		0.2	[0.14-0.26] unit increase	Illumina [247039]	N
915	chr6	43272187	43272188	rs4149178	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.1	SLC22A7, CRIP3	rs4149178-G	NR	2E-8		0.0241502	[0.016-0.033] unit decrease	Affymetrix [323123] (imputed)	N
915	chr6	43272187	43272188	rs4149178	23263486	Kottgen A	2012-12-23	Nat Genet	Genome-wide association analyses identify 18 new loci associated with serum urate concentrations.	Urate levels	49,825 European ancestry males, 60,522 European ancestry females	Up to 32,813 European ancestry individuals	6p21.1	SLC22A7	rs4149178-A	0.84	1E-6	(candidate)	0.034	[0.02-0.048] mg/dl decrease	Affymetrix, Illumina, Perlegen [2450547] (imputed)	N
915	chr6	43273603	43273604	rs2242416	34108613	Ivarsdottir EV	2021-06-09	Commun Biol	The genetic architecture of age-related hearing impairment revealed by genome-wide association analysis.	Age-related hearing impairment	121,934 European ancestry cases, 591,699 European ancestry controls	NA	6p21.1	CRIP3	rs2242416-A	40.35	1E-17	(additive)	0.96	[NR]	Affymetrix, Illumina [46900000] (imputed)	N
915	chr6	43276389	43276390	rs2254303	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	6p21.1		rs2254303-A	NR	3E-18		0.0115	[0.009-0.014] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
915	chr6	43276389	43276390	rs2254303	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	6p21.1	CRIP3	rs2254303-?	NR	4E-8		0.016222917	[0.01-0.022] unit increase	Illumina [27896057] (imputed)	N
915	chr6	43276389	43276390	rs2254303	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Pulse pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 Japanese ancestry individuals	6p21.1	NR	rs2254303-A	0.6493	6E-11	(East Asian)	0.2926	[0.2-0.38] unit decrease	Illumina [6200000] (imputed)	N
915	chr6	43280027	43280028	rs6458331	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	6p21.1	NR	rs6458331-T	0.725251	1E-22		0.0141529	[0.011-0.017] unit increase	Affymetrix [16578495] (imputed)	N
915	chr6	43280712	43280713	rs10948071	32986727	Kalra G	2020-09-28	PLoS Genet	Biological insights from multi-omic analysis of 31 genomic risk loci for adult hearing difficulty.	Age-related hearing impairment (MTAG)	330,759 European ancestry individuals	NA	6p21.1		rs10948071-?	NR	1E-18		8.835833	z score increase	Affymetrix [NR] (imputed)	N
915	chr6	43280712	43280713	rs10948071	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	6p21.1	CRIP3	rs10948071-T	0.65	4E-10	(Japanese)	0.4891	[0.34-0.64] unit decrease	Illumina [6200000] (imputed)	N
915	chr6	43280712	43280713	rs10948071	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Pulse pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 Japanese ancestry individuals	6p21.1	CRIP3	rs10948071-T	0.6498	4E-6	(Japanese)	0.2486	[0.14-0.35] unit decrease	Illumina [6200000] (imputed)	N
915	chr6	43280712	43280713	rs10948071	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	6p21.1	CRIP3	rs10948071-T	0.6498	4E-9	(Japanese)	0.3251	[0.22-0.43] unit decrease	Illumina [6200000] (imputed)	N
915	chr6	43280712	43280713	rs10948071	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Hypertension	22,566 Japanese ancestry cases, 28,226 Japanese ancestry controls	8,809 East Asian ancestry cases, 13,663 East Asian ancestry controls, 105,253 European ancestry individuals	6p21.1	CRIP3	rs10948071-T	0.6498	1E-6	(Japanese)	0.068	[0.041-0.095] unit decrease	Illumina [6200000] (imputed)	N
915	chr6	43280712	43280713	rs10948071	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	6p21.1	CRIP3	rs10948071-T	0.6498	1E-6	(Japanese)	0.2436	[0.15-0.34] unit decrease	Illumina [6200000] (imputed)	N
915	chr6	43280712	43280713	rs10948071	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure (cigarette smoking interaction)	80,552 European ancestry individuals, 27,118 African individuals, 13,438 Asian individuals, 8,805 Hispanic individuals	305,513 European ancestry individuals, 7,786 African individuals, 148,932 Asian individuals, 13,533 Hispanic individuals, 4,414 Brazilian individuals	6p21.1	CRIP3	rs10948071-?	NR	8E-21				Affymetrix, Illumina [18800000] (imputed)	N
915	chr6	43280712	43280713	rs10948071	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure (cigarette smoking interaction)	80,552 European ancestry individuals, 27,118 African individuals, 13,438 Asian individuals, 8,805 Hispanic individuals	305,513 European ancestry individuals, 7,786 African individuals, 148,932 Asian individuals, 13,533 Hispanic individuals, 4,414 Brazilian individuals	6p21.1	CRIP3	rs10948071-?		1E-10				Affymetrix, Illumina [18800000] (imputed)	N
915	chr6	43280712	43280713	rs10948071	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	6p21.1	CRIP3, ZNF318	rs10948071-C		1E-9		0.237	unit increase	Affymetrix [at least 2696785] (imputed)	N
915	chr6	43280712	43280713	rs10948071	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	6p21.1	CRIP3, ZNF318	rs10948071-C		3E-6		0.121	unit increase	Affymetrix [at least 2696785] (imputed)	N
915	chr6	43281486	43281486	rs759016271	31564434	Wells HRR	2019-09-26	Am J Hum Genet	GWAS Identifies 44 Independent Associated Genomic Loci for Self-Reported Adult Hearing Difficulty in UK Biobank.	Adult hearing difficulty	87,056 British ancestry cases, 163,333 British ancestry controls	30,765 European ancestry individuals	6p21.1	ZNF318, CRIP3, SLC22A7, CUL9, DNPH1, TTBK1	rs759016271-AGTAGTCCACTTTTCTTCTTTGCCTG	0.39	6E-21		0.0127	[0.011-0.015] unit decrease	Affymetrix [9740198] (imputed)	N
915	chr6	43287721	43287722	rs77915916	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	6p21.1	CRIP3	rs77915916-A	0.917	1E-20		0.0046	[0.0034-0.0058] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
915	chr6	43287721	43287722	rs77915916	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	6p21.1	CRIP3	rs77915916-A	0.9162	2E-20		0.0047	[0.0035-0.0059] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
915	chr6	43287721	43287722	rs77915916	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	6p21.1	Intergenic	rs77915916-A	0.9228	1E-11		0.0248	[0.018-0.032] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
915	chr6	43288653	43288656	rs553448379	33742053	Wells HRR	2021-03-19	Sci Rep	Genome-wide association study suggests that variation at the RCOR1 locus is associated with tinnitus in UK Biobank.	Tinnitus	91,424 British ancestry individuals	NA	6p21.1	ZNF318	rs553448379-T	NR	5E-7		0.063	[0.038-0.088] unit decrease	Affymetrix [9740198] (imputed)	N
915	chr6	43293629	43293630	rs6930689	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	129,405 East Asian ancestry individuals	NA	6p21.1		rs6930689-C	0.388583	8E-15		0.028172	[0.021-0.035] unit increase	Illumina [13475706] (imputed)	N
915	chr6	43293629	43293630	rs6930689	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	6p21.1	ZNF318	rs6930689-T	0.6236	3E-14	(East Asian)	0.0466	[0.034-0.059] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
915	chr6	43304679	43304679	rs35121648	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.1	ZNF318	rs35121648-A	NR	6E-10		0.0179433	[0.012-0.024] unit decrease	Affymetrix [321016] (imputed)	N
915	chr6	43307398	43307399	rs145629243	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6p21.1		rs145629243-?	NR	3E-18				NR [~ 8900000] (imputed)	N
915	chr6	43308362	43308363	rs1563788	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.1	ZNF318	rs1563788-T	NR	7E-9		0.0181384	[0.012-0.024] unit decrease	Affymetrix [321016] (imputed)	N
915	chr6	43308362	43308363	rs1563788	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	6p21.1	ZNF318	rs1563788-T	0.35	3E-10	(Japanese)	0.4949	[0.34-0.65] unit increase	Illumina [6200000] (imputed)	N
915	chr6	43308362	43308363	rs1563788	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Pulse pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 Japanese ancestry individuals	6p21.1	ZNF318	rs1563788-T	0.348	4E-6	(Japanese)	0.25	[0.14-0.36] unit increase	Illumina [6200000] (imputed)	N
915	chr6	43308362	43308363	rs1563788	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	6p21.1	ZNF318	rs1563788-T	0.348	2E-9	(Japanese)	0.3305	[0.22-0.44] unit increase	Illumina [6200000] (imputed)	N
915	chr6	43308362	43308363	rs1563788	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Hypertension	22,566 Japanese ancestry cases, 28,226 Japanese ancestry controls	8,809 East Asian ancestry cases, 13,663 East Asian ancestry controls, 105,253 European ancestry individuals	6p21.1	ZNF318	rs1563788-T	0.348	4E-7	(Japanese)	0.0705	[0.043-0.098] unit increase	Illumina [6200000] (imputed)	N
915	chr6	43308362	43308363	rs1563788	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	6p21.1	ZNF318	rs1563788-T	0.348	7E-7	(Japanese)	0.2488	[0.15-0.35] unit increase	Illumina [6200000] (imputed)	N
915	chr6	43308362	43308363	rs1563788	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Systolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	6p21.1	TTBK1, SLC22A7, ZNF318	rs1563788-T	0.295	3E-6	(EA, initial)	0.366	[0.21-0.52] unit increase	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
915	chr6	43308362	43308363	rs1563788	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Pulse pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	6p21.1	TTBK1, SLC22A7, ZNF318	rs1563788-T	0.295	7E-7	(EA, initial)	0.253	[0.15-0.35] unit increase	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
915	chr6	43308362	43308363	rs1563788	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	6p21.1	ZNF318	rs1563788-C		4E-10		0.258	unit decrease	Affymetrix [at least 2696785] (imputed)	N
915	chr6	43308362	43308363	rs1563788	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	6p21.1	ZNF318	rs1563788-C		4E-8		0.151	unit decrease	Affymetrix [at least 2696785] (imputed)	N
915	chr6	43308362	43308363	rs1563788	26390057	Kato N	2015-09-21	Nat Genet	Trans-ancestry genome-wide association study identifies 12 genetic loci influencing blood pressure and implicates a role for DNA methylation.	Systolic blood pressure	31,516 East Asian ancestry individuals,  35,352 European ancestry individuals, 33,126 South Asian ancestry individuals	87,205 individuals, 48,268 East Asian ancestry individuals, 68,456 European ancestry individuals and 16,328 South Asian ancestry individuals	6p21.1	TTBK1, SLC22A7, ZNF318	rs1563788-T	0.309336104338348	2E-16		0.5113064	[0.39-0.63] mmHg increase	Affymetrix, Illumina, Perlegen [2127883] (imputed)	N
915	chr6	43327038	43327039	rs4714677	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	6p21.1		rs4714677-?	NR	3E-10				NR [~ 8900000] (imputed)	N
915	chr6	43334754	43334755	rs9394948	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals	at least 101,293 European ancestry individuals	6p21.1	ZNF318	rs9394948-A	0.341	2E-13	(Japanese)	0.032	[0.024-0.04] unit increase	Illumina [5864938] (imputed)	N
915	chr6	43334754	43334755	rs9394948	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum uric acid levels	109,029 Japanese ancestry individuals	NA	6p21.1	ZNF318	rs9394948-?	NR	1E-11		0.03079	[0.022-0.04] unit decrease novel	Illumina [6108953] (imputed)	N
915	chr6	43337801	43337802	rs73416724	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.1	ABCC10, CRIP3, MIR6780B, SLC22A7, TTBK1, ZNF318	rs73416724-A		3E-8		1.09	[1.06-1.13]	Affymetrix, Illumina [NR]	N
915	chr6	43341688	43341689	rs111547017	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	6p21.1	NR	rs111547017-A	NR	1E-6		1.1	[NR]	Illumina [7158791] (imputed)	N
915	chr6	43342590	43342591	rs4714678	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	6p21.1		rs4714678-G	NR	8E-11		0.0126	[0.0089-0.0163] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
915	chr6	43342590	43342591	rs4714678	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	6p21.1	NR	rs4714678-G	NR	3E-10		0.0153	[0.011-0.02] unit increase	Affymetrix [9000000] (imputed)	N
915	chr6	43342590	43342591	rs4714678	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	6p21.1	NR	rs4714678-A	0.3499	1E-17	(East Asian)	0.5681	[0.44-0.7] unit increase	Illumina [6200000] (imputed)	N
915	chr6	43342590	43342591	rs4714678	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	6p21.1	NR	rs4714678-A	0.3499	9E-16	(East Asian)	0.3758	[0.28-0.47] unit increase	Illumina [6200000] (imputed)	N
915	chr6	43343238	43343239	rs79009481	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p21.1	NR	rs79009481-?	NR	5E-7		5.033	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
915	chr6	43345802	43345803	rs7742789	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	6p21.1	ZNF318	rs7742789-T	NR	2E-10		0.0223298	[0.015-0.029] unit decrease	Affymetrix [323858] (imputed)	N
915	chr6	43345802	43345803	rs7742789	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.1	ZNF318	rs7742789-T	NR	3E-15		0.0266177	[0.02-0.033] unit decrease	Affymetrix [323123] (imputed)	N
915	chr6	43345802	43345803	rs7742789	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	41,389 African ancestry individuals	11,364 African ancestry individuals, 253,288 European ancestry individuals	6p21.1	ZNF318	rs7742789-C		8E-11				Affymetrix, Illumina [17972582] (imputed)	N
915	chr6	43346461	43346462	rs9369409	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls, 49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	6p21.1		rs9369409-G	NR	4E-17		0.0495	[0.038-0.061] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
915	chr6	43346461	43346462	rs9369409	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.1	ZNF318	rs9369409-C	NR	1E-9		0.0174983	[0.012-0.023] unit increase	Affymetrix [319769] (imputed)	N
915	chr6	43346461	43346462	rs9369409	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.1	ZNF318	rs9369409-C	NR	5E-9		0.0167783	[0.011-0.022] unit increase	Affymetrix [319769] (imputed)	N
915	chr6	43346461	43346462	rs9369409	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls	NA	6p21.1	ZNF318	rs9369409-C	0.403623	3E-10		0.05131272	[0.035-0.067] unit increase	Affymetrix [7288503] (imputed)	N
915	chr6	43346461	43346462	rs9369409	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	6p21.1		rs9369409-?	NR	8E-15				NR [~ 8900000] (imputed)	N
915	chr6	43348511	43348512	rs9472040	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	6p21.1		rs9472040-G	NR	9E-19		0.0176	[0.014-0.022] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
915	chr6	43348511	43348512	rs9472040	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	6p21.1		rs9472040-G	NR	1E-16		0.0159	[0.012-0.02] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
915	chr6	43349214	43349215	rs7763558	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	6p21.1	ZNF318	rs7763558-A	0.3991	3E-24		0.3526	[0.28-0.42] mmHg increase	Affymetrix [NR] (imputed)	N
915	chr6	43349214	43349215	rs7763558	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	6p21.1	ZNF318	rs7763558-A	0.3962	4E-14		0.196	[0.15-0.25] mmHg increase	Affymetrix [NR] (imputed)	N
915	chr6	43349214	43349215	rs7763558	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Pulse pressure x alcohol consumption interaction (2df test)	91,099 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	238,053 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,447 Hispanic ancestry drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic ancestry non-drinkers	6p21.1	LOC105375065, ZNF318	rs7763558-A	0.33	5E-10	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
915	chr6	43349214	43349215	rs7763558	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Pulse pressure x alcohol consumption interaction (2df test)	91,099 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	238,053 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,447 Hispanic ancestry drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic ancestry non-drinkers	6p21.1	LOC105375065, ZNF318	rs7763558-A	0.33	2E-16	(Asian, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
915	chr6	43349307	43349308	rs7763350	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	6p21.1		rs7763350-?	NR	4E-16				NR [~ 8900000] (imputed)	N
915	chr6	43349794	43349795	rs7764523	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	6p21.1		rs7764523-?	NR	6E-18				NR [~ 8900000] (imputed)	N
915	chr6	43350752	43350753	rs9394951	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls, 22,356 East Asian ancestry cases, 156,370 East Asian ancestry controls	NA	6p21.1		rs9394951-T	NR	2E-14		0.0491	[0.037-0.062] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
915	chr6	43350752	43350753	rs9394951	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	6p21.1		rs9394951-T	NR	2E-14		0.038	[0.028-0.048] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
915	chr6	43350752	43350753	rs9394951	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6p21.1		rs9394951-T	0.566392	1E-17		0.01874266	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
915	chr6	43350752	43350753	rs9394951	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	6p21.1		rs9394951-T	0.56623	4E-14		0.016826464	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
915	chr6	43350752	43350753	rs9394951	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	6p21.1		rs9394951-T	0.566423	1E-16		0.0155709	[0.012-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
915	chr6	43350752	43350753	rs9394951	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls	NA	6p21.1	ZNF318	rs9394951-C	0.433625	6E-11		0.0518412	[0.036-0.067] unit increase	Affymetrix [7288503] (imputed)	N
915	chr6	43350752	43350753	rs9394951	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	6p21.1	ZNF318	rs9394951-C	0.434424	2E-9		0.036297712	[0.024-0.048] unit increase	Affymetrix [7288503] (imputed)	N
915	chr6	43351685	43351686	rs139084170	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	IgD on unswitched memory B cell	3,636 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.1		rs139084170-A	0.0509	5E-11		0.3794	[0.27-0.49] unit increase	Illumina [18230756] (imputed)	N
915	chr6	43351685	43351686	rs139084170	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	IgD on IgD+ CD24+ B cell	3,656 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.1		rs139084170-A	0.05062	6E-10		0.3593	[0.25-0.47] unit increase	Illumina [18238197] (imputed)	N
915	chr6	43352897	43352898	rs6919440	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	6p21.1		rs6919440-A	NR	1E-14		0.0149	[0.011-0.019] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
915	chr6	43352897	43352898	rs6919440	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.1	ZNF318	rs6919440-G	NR	4E-16		0.0250879	[0.019-0.031] unit decrease	Affymetrix [323123] (imputed)	N
915	chr6	43352897	43352898	rs6919440	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p21.1	NR	rs6919440-A	0.570839	5E-22				Affymetrix, Illumina [24588908] (imputed)	N
915	chr6	43352897	43352898	rs6919440	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	6p21.1	NR	rs6919440-A	0.56427	2E-23		0.018405	[0.015-0.022] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
915	chr6	43352897	43352898	rs6919440	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p21.1	NR	rs6919440-A	0.568212	4E-14				Affymetrix, Illumina [24246363] (imputed)	N
915	chr6	43352897	43352898	rs6919440	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	6p21.1	NR	rs6919440-A	0.564486	1E-14		0.013991	[0.01-0.018] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
915	chr6	43352897	43352898	rs6919440	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	6p21.1	NR	rs6919440-A	0.566095	9E-11		0.012484	[0.0087-0.0163] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
915	chr6	43352897	43352898	rs6919440	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	6p21.1	NR	rs6919440-A	0.6483	1E-11	(East Asian)	0.2822	[0.2-0.36] unit decrease	Illumina [6200000] (imputed)	N
915	chr6	43352897	43352898	rs6919440	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	6p21.1	intergenic	rs6919440-A	0.5671	3E-9		0.02175354	[0.015-0.029] unit increase	Affymetrix [~ 2500000] (imputed)	N
915	chr6	43352897	43352898	rs6919440	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Systolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	6p21.1	ZNF318, ABCC10	rs6919440-A	0.57	5E-9		0.337	[0.22-0.45] mm Hg decrease	Affymetrix, Illumina, Perlegen [128272]	N
915	chr6	43352979	43352980	rs1214759	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	6p21.1	NR	rs1214759-G	0.6787179999999999	3E-12		0.018082	[0.013-0.023] unit increase	Affymetrix [16585745] (imputed)	N
915	chr6	43352979	43352980	rs1214759	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption interaction (2df test)	63,608 European ancestry drinkers, 10,193 African American or Afro-Caribbean heavy drinkers,  2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,494 European ancestry non-drinkers, 11,224 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,002 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,452 Hispanic drinkers, 43,316 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,945 Asian ancestry non-drinkers, 6,925 Hispanic non-drinkers	6p21.1	LOC105375065, ZNF318	rs1214759-A	0.33	3E-11	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
915	chr6	43352979	43352980	rs1214759	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption interaction (2df test)	63,608 European ancestry drinkers, 10,193 African American or Afro-Caribbean heavy drinkers,  2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,494 European ancestry non-drinkers, 11,224 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,002 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,452 Hispanic drinkers, 43,316 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,945 Asian ancestry non-drinkers, 6,925 Hispanic non-drinkers	6p21.1	LOC105375065, ZNF318	rs1214759-A	0.33	2E-22	(Asian, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
915	chr6	43354430	43354431	rs1214761	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	6p21.1	NR	rs1214761-G	0.6787	2E-8		0.00133	[0.00085-0.00181] unit decrease	Affymetrix [NR] (imputed)	N
915	chr6	43354430	43354431	rs1214761	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	6p21.1		rs1214761-G	0.678366	6E-22		0.023087272	[0.018-0.028] unit increase	Affymetrix [93095623] (imputed)	N
915	chr6	43354430	43354431	rs1214761	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	6p21.1		rs1214761-G	0.678365	7E-21		0.022512317	[0.018-0.027] unit increase	Affymetrix [93095623] (imputed)	N
915	chr6	43354430	43354431	rs1214761	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	6p21.1	NR	rs1214761-G	0.6790320000000001	6E-26		0.0311146	[0.025-0.037] unit increase	Affymetrix [16580851] (imputed)	N
915	chr6	43354430	43354431	rs1214761	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	6p21.1	VEGFA	rs1214761-G	0.63	6E-7		0.099	[-0.08328-0.28128] ml/min/1.73m2 decrease	Affymetrix, Illumina [at least 5248638] (imputed)	N
915	chr6	43354521	43354522	rs6458334	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.1	ZNF318	rs6458334-A	NR	1E-8		0.0213632	[0.014-0.029] unit decrease	Affymetrix [323123] (imputed)	N
915	chr6	43355850	43355851	rs2396004	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	6p21.1		rs2396004-G	0.566585	1E-12		0.015174227	[0.011-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
915	chr6	43355850	43355851	rs2396004	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	6p21.1	ZNF318, ABCC10	rs2396004-A	0.4354	3E-9		1.0216306		Affymetrix [11880941] (imputed)	N
915	chr6	43364493	43364494	rs6912283	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	6p21.1	ZNF318	rs6912283-G	NR	7E-11		0.0210517	[0.015-0.027] unit decrease	Affymetrix [323858] (imputed)	N
915	chr6	43364493	43364494	rs6912283	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	6p21.1	ZNF318, ABCC10	rs6912283-A	0.56	2E-10		6.38	z-score increase	Affymetrix [4311822] (imputed)	N
915	chr6	43364493	43364494	rs6912283	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	6p21.1	NR	rs6912283-A	0.562199	1E-12		0.0138991	[0.01-0.0178] unit increase	Affymetrix [16583148] (imputed)	N
915	chr6	43364493	43364494	rs6912283	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	6p21.1	ZNF318	rs6912283-G	0.436494	6E-9		0.0107196	[0.0071-0.0143] unit increase	NR [13737936] (imputed)	N
915	chr6	43371564	43371565	rs4714680	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	6p21.1		rs4714680-T	0.633331	2E-9		0.0126015	[0.0085-0.0167] unit increase	Illumina [13479295] (imputed)	N
915	chr6	43371564	43371565	rs4714680	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.1	ABCC10	rs4714680-T	NR	4E-8		0.016773	[0.011-0.023] unit increase	Affymetrix [323123] (imputed)	N
916	chr6	43385953	43385953	rs58169112	34130359	Curtis SW	2021-06-15	Genet Epidemiol	FAT4 identified as a potential modifier of orofacial cleft laterality.	Left unilateral cleft lip	68 Asian ancestry cases, 78 European ancestry cases, 70 Hispanic cases, 1,626 controls	NA	6p21.1	NR	rs58169112-?		4E-6		1.98	[1.48-2.66]	Illumina [539473] (imputed)	N
916	chr6	43396324	43396325	rs1214752	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	6p21.1	ABCC10, MIR6780B	rs1214752-T	0.4953	1E-6		0.0305	[0.018-0.043] unit decrease	NR [8041861] (imputed)	N
916	chr6	43401089	43401090	rs138248684	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	6p21.1	NR	rs138248684-T	NR	7E-11		0.3662	[0.26-0.48] unit decrease	Affymetrix [9000000] (imputed)	N
916	chr6	43401089	43401090	rs138248684	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	6p21.1	NR	rs138248684-T	NR	2E-10		0.3566	[0.25-0.47] unit increase	Affymetrix [9000000] (imputed)	N
916	chr6	43401104	43401105	rs9394952	34108613	Ivarsdottir EV	2021-06-09	Commun Biol	The genetic architecture of age-related hearing impairment revealed by genome-wide association analysis.	Age-related hearing impairment	121,934 European ancestry cases, 591,699 European ancestry controls	NA	6p21.1	ABCC10	rs9394952-G	48.13	3E-11	(recessive)	1.05	[NR]	Affymetrix, Illumina [46900000] (imputed)	N
916	chr6	43407796	43407797	rs111997645	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	6p21.1	Intergenic	rs111997645-A	0.0722	6E-13	(MTAG)	0.0249	[0.018-0.032] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
916	chr6	43407796	43407797	rs111997645	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	6p21.1	Intergenic	rs111997645-A	0.0724	8E-10	(MTAG)	0.0196	[0.013-0.026] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
916	chr6	43408104	43408105	rs67861980	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DLK2	5,363 Icelandic ancestry individuals	NA	6p21.1		rs67861980-T	0.2506	3E-16		0.165473	[0.13-0.21] unit decrease	Illumina [7506463] (imputed)	N
916	chr6	43408465	43408466	rs2794264	34620984	Skuladottir AT	2021-10-07	Commun Biol	A genome-wide meta-analysis uncovers six sequence variants conferring risk of vertigo.	Vertigo	48,072 European ancestry cases, 894,541 European ancestry controls	NA	6p21.1		rs2794264-C	NR	3E-6		1.04248		Affymetrix, Illumina [62056310] (imputed)	N
916	chr6	43412864	43412865	rs2125739	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	6p21.1	NR	rs2125739-C	NR	5E-9		0.016	[0.011-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
916	chr6	43412864	43412865	rs2125739	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	6p21.1	NR	rs2125739-C	NR	4E-9		0.016	[0.011-0.021] unit increase	Affymetrix [9000000] (imputed)	N
916	chr6	43412864	43412865	rs2125739	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.1	DLK2	rs2125739-T	0.75328125	8E-8	(DLK2, 9359_9_3)	0.14241894	[0.091-0.194] unit increase	Illumina [> 1000000] (imputed)	N
916	chr6	43414233	43414234	rs1214747	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.1	ABCC10	rs1214747-G	NR	6E-9		0.0234822	[0.016-0.031] unit decrease	Affymetrix [323123] (imputed)	N
916	chr6	43418527	43418528	rs35192247	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	6p21.1	NR	rs35192247-T	NR	2E-9		0.0343	[0.023-0.045] unit decrease	Affymetrix [9000000] (imputed)	N
916	chr6	43420455	43420455	rs111814460	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid respiratory support vs population)	495 European ancestry cases, 680,440 European ancestry controls, 102 Hispanic or Latin American cases, 94,330 Hispanic or Latin American controls, 39 Black or African American cases, 22,410 Black or African American controls	NA	6p21.1		rs111814460-?	NR	5E-6		0.7084837	[0.41-1.01] unit increase	Illumina [9842460] (imputed)	N
916	chr6	43449229	43449230	rs61018535	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	6p21.1	TJAP1	rs61018535-?	NR	2E-7				Affymetrix [5486770] (imputed)	N
916	chr6	43487815	43487816	rs201320592	29093273	Almgren P	2017-11-02	JCI Insight	Genetic determinants of circulating GIP and GLP-1 concentrations.	GLP-1 levels in response to oral glucose tolerance test (fasting)	3,344 Swedish ancestry individuals	4,905 Finnish ancestry individuals	6p21.1	POLR1C	rs201320592-A	0.002	4E-6		0.425	[0.24-0.61] unit increase	Illumina [at least 81396]	N
916	chr6	43493428	43493429	rs144041302	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	6p21.1		rs144041302-T	NR	4E-10		0.142	[0.098-0.186] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
916	chr6	43493428	43493429	rs144041302	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	6p21.1	XPO5	rs144041302-T	0.00285100000000005	5E-12		0.15323752	[0.11-0.2] unit decrease	Affymetrix [93095623] (imputed)	N
916	chr6	43496661	43496662	rs1106841	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p21.1	XPO5	rs1106841-C		1E-9		0.014	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
917	chr6	43528440	43528441	rs1096699	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	6p21.1	NR	rs1096699-T	NR	2E-10		0.0161	[0.011-0.021] unit increase	Affymetrix [9000000] (imputed)	N
917	chr6	43566976	43566977	rs181216459	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Vascular endothelial growth factor levels	7,118 Finnish ancestry individuals	NA	6p21.1	NR	rs181216459-C		5E-6		0.4151	[0.24-0.59] SD units decrease	NR [10700000] (imputed)	N
917	chr6	43571404	43571405	rs9333547	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-12p70 levels	8,270 Finnish ancestry individuals	NA	6p21.1	NR	rs9333547-C		8E-6		0.1298	[0.073-0.187] SD units increase	NR [10700000] (imputed)	N
917	chr6	43588226	43588227	rs567230078	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	6p21.1		rs567230078-A	NR	7E-11		0.0469	[0.033-0.061] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
917	chr6	43588226	43588227	rs567230078	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		6p21.1	GTPBP2	rs567230078-T	0.973181	4E-9		0.0250634	[0.017-0.033] unit increase	Affymetrix [12370749]	N
917	chr6	43604166	43604167	rs35679149	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6p21.1	NR	rs35679149-?	NR	2E-12				Affymetrix [~ 8270000] (imputed)	N
917	chr6	43604166	43604167	rs35679149	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	6p21.1		rs35679149-?	NR	2E-12				NR [~ 8900000] (imputed)	N
917	chr6	43604166	43604167	rs35679149	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	6p21.1	NA	rs35679149-A	0.9742	7E-12		0.0413	[0.03-0.053] unit increase	NR [~ 27400000] (imputed)	N
917	chr6	43604166	43604167	rs35679149	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	6p21.1	NA	rs35679149-A	0.9742	7E-12		0.0413	[0.03-0.053] unit increase	NR [~ 27400000] (imputed)	N
917	chr6	43617686	43617687	rs6911069	29531279	Zhou S	2018-03-12	Sci Rep	Genome-wide association analysis identifies new candidate risk loci for familial intracranial aneurysm in the French-Canadian population.	Intracranial aneurysm	173 French Canadian cases, 1,772 French Canadian controls	2,617 cases, 1,416 controls	6p21.1	RSPH9	rs6911069-?		2E-6	(French Canadians)	2.8934348		Illumina [7614484] (imputed)	N
917	chr6	43640098	43640099	rs2277125	31596875	Traylor M	2019-10-09	PLoS One	Genetic associations with radiological damage in rheumatoid arthritis: Meta-analysis of seven genome-wide association studies of 2,775 cases.	Joint damage in rheumatoid arthritis	2,527 European ancestry individuals, 196 African ancestry individuals, 52 individuals	NA	6p21.1	MRPS18A	rs2277125-?	NR	5E-6				Affymetrix, Illumina [4802696] (imputed)	N
917	chr6	43646400	43646401	rs2295948	31596875	Traylor M	2019-10-09	PLoS One	Genetic associations with radiological damage in rheumatoid arthritis: Meta-analysis of seven genome-wide association studies of 2,775 cases.	Joint damage in rheumatoid arthritis	2,527 European ancestry individuals	NA	6p21.1	MRPS18A	rs2295948-?	NR	2E-6				Affymetrix, Illumina [2723488] (imputed)	N
918	chr6	43650971	43650972	rs143219228	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	6p21.1	NR	rs143219228-T		3E-8		0.21	[0.13-0.29] unit increase	NR [NR]	N
918	chr6	43693093	43693094	rs11965885	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p21.1	RP1-261G23.5	rs11965885-T	0.582099	7E-15		0.017613795	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
918	chr6	43693093	43693094	rs11965885	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	6p21.1	RP1-261G23.5	rs11965885-T	0.582087	8E-13		0.016263314	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
918	chr6	43693093	43693094	rs11965885	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	6p21.1		rs11965885-?	NR	5E-12				NR [~ 8900000] (imputed)	N
918	chr6	43693093	43693094	rs11965885	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	6p21.1	NR	rs11965885-?	NR	2E-6		0.0083895	[0.0049-0.0118] unit decrease	Affymetrix [805426] (imputed)	N
918	chr6	43694597	43694598	rs4711748	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	6p21.1	RP1-261G23.5	rs4711748-T	0.23	3E-8		1.05	[1.03-1.07]	Illumina [20370935] (imputed)	N
918	chr6	43695563	43695564	rs9472113	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	6p21.1	RP1-261G23.5	rs9472113-C	0.748494	4E-10		0.01621344	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
918	chr6	43704417	43704417	rs34528081	26910538	Choi SH	2016-02-24	PLoS Genet	Six Novel Loci Associated with Circulating VEGF Levels Identified by a Meta-analysis of Genome-Wide Association Studies.	Vascular endothelial growth factor levels	9541 European ancestry individuals, 1,115 Cilento (founder/genetic isolated) individuals, 897 Ogliastran (founder/genetic isolated) individuals, 1,759 Val Borbera (founder/genetic isolated) individuals	2,141 European ancestry individuals, 659 Sorbian (founder/genetic isolated) individuals	6p21.1	VEGFA, MRPS18A	rs34528081-T	0.6	2E-17		0.09	[0.07-0.11] unit decrease	Affymetrix, Illumina [6705861] (imputed)	N
918	chr6	43709784	43709785	rs9472120	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	6p21.1	NR	rs9472120-C	NR	3E-9		1.039	[1.03-1.05]	Affymetrix, Illumina [29235255] (imputed)	N
918	chr6	43710347	43710348	rs6920449	28139693	Hoffmann TJ	2017-01-31	Nat Commun	Genome-wide association study of prostate-specific antigen levels identifies novel loci independent of prostate cancer.	Prostate-specific antigen levels	28,503 European ancestry individuals	2,716 Latino individuals, 2,518 East Asian ancestry individuals, 1,585 African American individuals, 6,193 European ancestry individuals (later diagnosed with prostate cancer), 5,603 European ancestry individuals	6p21.1	VEGFA	rs6920449-T	0.16	6E-12		0.0529541	[0.038-0.068] unit increase	Affymetrix [10109774] (imputed)	N
918	chr6	43710380	43710381	rs10807290	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Prostate cancer	10,792 European ancestry cases, 410,350 European ancestry controls	NA	6p21.1		rs10807290-C	NR	8E-7		1.0746	NR	Affymetrix [7846216] (imputed)	N
918	chr6	43711365	43711366	rs12204413	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.1	RP1-261G23.5	rs12204413-C	NR	2E-11		0.0326337	[0.023-0.042] unit increase	Affymetrix [319769] (imputed)	N
918	chr6	43711365	43711366	rs12204413	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.1	RP1-261G23.5	rs12204413-C	NR	5E-11		0.0321377	[0.023-0.042] unit increase	Affymetrix [319769] (imputed)	N
918	chr6	43711365	43711366	rs12204413	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6p21.1	NR	rs12204413-?	NR	7E-14				Affymetrix [~ 8270000] (imputed)	N
918	chr6	43711365	43711366	rs12204413	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6p21.1	NR	rs12204413-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
918	chr6	43722952	43722953	rs833051	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	6p21.1		rs833051-T	0.868374	1E-9		0.02055832	[0.014-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
918	chr6	43730643	43730644	rs1547651	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	6p21.1		rs1547651-T	0.16472	2E-10		0.021121591	[0.015-0.028] unit increase	Affymetrix [93095623] (imputed)	N
918	chr6	43731650	43731651	rs78003500	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	6p21.1	intergenic	rs78003500-T	0.057	3E-19		0.06933705	[0.054-0.084] unit decrease	Affymetrix [~ 2500000] (imputed)	N
918	chr6	43731650	43731651	rs78003500	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	6p21.1	intergenic	rs78003500-T	0.057	1E-16		0.0636029	[0.049-0.079] unit decrease	Affymetrix [~ 2500000] (imputed)	N
918	chr6	43731853	43731854	rs833058	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Red blood cell count	108,794 Japanese ancestry individuals	NA	6p21.1	NR	rs833058-?	NR	1E-8		0.02739	[0.018-0.037] unit increase novel	Illumina [6108953] (imputed)	N
918	chr6	43734605	43734606	rs9381248	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6p21.1	NR	rs9381248-?	NR	5E-13				Affymetrix [~ 8270000] (imputed)	N
918	chr6	43734797	43734798	rs9381249	33227023	Wang Y	2020-11-23	PLoS Genet	Genome-wide association study identifies 16 genomic regions associated with circulating cytokines at birth.	Vascular endothelial growth factor A levels	8,318 European ancestry individuals	(see Ahola-Olli 2017)	6p21.1	NR	rs9381249-T	NR	4E-9		0.1679	[0.11-0.22] unit decrease	Illumina [~ 9000000] (imputed)	N
918	chr6	43737485	43737486	rs833061	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	6p21.1	VEGFA	rs833061-T	0.49595	3E-40		0.029137097	[0.025-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
918	chr6	43737485	43737486	rs833061	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	6p21.1	VEGFA	rs833061-T	0.495955	1E-27		0.026599688	[0.022-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
918	chr6	43737485	43737486	rs833061	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	6p21.1	VEGFA	rs833061-T	0.495935	1E-47		0.033345234	[0.029-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
918	chr6	43737485	43737486	rs833061	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	149,861 East Asian ancestry individuals	NA	6p21.1	NR	rs833061-C	0.303778	1E-12		0.029636	[0.021-0.038] SD units increase	Affymetrix, Illumina [16709126] (imputed)	N
918	chr6	43737829	43737830	rs1570360	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	6p21.1	NR	rs1570360-A	0.328551	3E-10		0.00560092	[0.0039-0.0073] unit increase	Affymetrix [16582909] (imputed)	N
918	chr6	43737829	43737830	rs1570360	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	6p21.1	NR	rs1570360-A	0.328551	2E-9		0.00594209	[0.004-0.0079] unit increase	Affymetrix [16582965] (imputed)	N
918	chr6	43737982	43737983	rs186369938	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	6p21.1	VEGFA	rs186369938-C	0.022876	5E-12		0.05296455	[0.038-0.068] unit increase	Affymetrix [93095623] (imputed)	N
918	chr6	43737982	43737983	rs186369938	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	6p21.1	VEGFA	rs186369938-C	0.022871	1E-11		0.05205087	[0.037-0.067] unit increase	Affymetrix [93095623] (imputed)	N
918	chr6	43737982	43737983	rs186369938	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6p21.1	NR	rs186369938-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
918	chr6	43740839	43740840	rs3024987	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.1	VEGFA	rs3024987-T	NR	2E-12		0.0302757	[0.022-0.039] unit increase	Affymetrix [319769] (imputed)	N
918	chr6	43740839	43740840	rs3024987	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.1	VEGFA	rs3024987-T	NR	7E-13		0.0308204	[0.022-0.039] unit increase	Affymetrix [319769] (imputed)	N
918	chr6	43740839	43740840	rs3024987	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.1	VEGFA	rs3024987-T	NR	2E-8		0.0244898	[0.016-0.033] unit increase	Affymetrix [321114] (imputed)	N
918	chr6	43740839	43740840	rs3024987	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.1	VEGFA	rs3024987-T	NR	8E-9		0.0250158	[0.017-0.034] unit increase	Affymetrix [321169] (imputed)	N
918	chr6	43742625	43742626	rs833070	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p21.1	VEGFA	rs833070-T		1E-50		0.032	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
918	chr6	43742625	43742626	rs833070	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	6p21.1	VEGFA	rs833070-C	0.4996	3E-16		0.0289477	[0.022-0.036] unit decrease	Affymetrix [~ 2500000] (imputed)	N
918	chr6	43742625	43742626	rs833070	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	6p21.1	VEGFA	rs833070-C	0.4996	1E-20		0.03284456	[0.026-0.04] unit decrease	Affymetrix [~ 2500000] (imputed)	N
918	chr6	43742625	43742626	rs833070	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	6p21.1	VEGFA	rs833070-C	0.4996	3E-22		0.03415615	[0.027-0.041] unit decrease	Affymetrix [~ 2500000] (imputed)	N
918	chr6	43746409	43746410	rs3025047	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6p21.1	NR	rs3025047-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
918	chr6	43747377	43747378	rs3025049	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	6p21.1	VEGFA	rs3025049-A	0.016562	2E-13		0.06521416	[0.048-0.083] unit decrease	Affymetrix [93095623] (imputed)	N
918	chr6	43748485	43748486	rs138551969	29124443	Yasukochi Y	2017-11-09	Mol Genet Genomics	Identification of CDC42BPG as a novel susceptibility locus for hyperuricemia in a Japanese population.	Serum uric acid levels	5,847 Japanese ancestry individuals	NA	6p21.1	VEGFA	rs138551969-?	9.97606E-5	2E-16				Illumina [~ 244000]	N
918	chr6	43748485	43748486	rs138551969	29124443	Yasukochi Y	2017-11-09	Mol Genet Genomics	Identification of CDC42BPG as a novel susceptibility locus for hyperuricemia in a Japanese population.	Hyperuricemia	847 Japanese ancestry cases, 4,640 Japanese ancestry controls	972 Japanese ancestry cases, 4,584 Japanese ancestry controls	6p21.1	VEGFA	rs138551969-?	9.97606E-5	2E-16				Illumina [~ 244000]	N
918	chr6	43748485	43748486	rs138551969	29124443	Yasukochi Y	2017-11-09	Mol Genet Genomics	Identification of CDC42BPG as a novel susceptibility locus for hyperuricemia in a Japanese population.	Estimated glomerular filtration rate	5,636 Japanese ancestry individuals	NA	6p21.1	VEGFA	rs138551969-?	1.93199E-4	2E-16				Illumina [~ 244000]	N
918	chr6	43748485	43748486	rs138551969	29124443	Yasukochi Y	2017-11-09	Mol Genet Genomics	Identification of CDC42BPG as a novel susceptibility locus for hyperuricemia in a Japanese population.	Creatinine levels	5,636 Japanese ancestry individuals	NA	6p21.1	VEGFA	rs138551969-?	1.93199E-4	2E-16				Illumina [~ 244000]	N
918	chr6	43749109	43749110	rs3025020	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6p21.1	NR	rs3025020-?	NR	3E-19				Affymetrix [~ 8270000] (imputed)	N
918	chr6	43749109	43749110	rs3025020	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6p21.1	NR	rs3025020-?	NR	3E-15				Affymetrix [~ 8270000] (imputed)	N
918	chr6	43749162	43749163	rs3025021	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-10 levels	7,681 Finnish ancestry individuals	NA	6p21.1	NR	rs3025021-C		1E-6		0.0947	[0.056-0.133] SD units decrease	NR [10700000] (imputed)	N
918	chr6	43750550	43750551	rs3025028	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.1	VEGFA	rs3025028-C	NR	9E-14		0.0212963	[0.016-0.027] unit decrease	Affymetrix [319769] (imputed)	N
918	chr6	43750550	43750551	rs3025028	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.1	VEGFA	rs3025028-C	NR	7E-14		0.0213702	[0.016-0.027] unit decrease	Affymetrix [319769] (imputed)	N
918	chr6	43750550	43750551	rs3025028	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.1	VEGFA	rs3025028-C	NR	6E-12		0.0198515	[0.014-0.026] unit decrease	Affymetrix [321114] (imputed)	N
918	chr6	43750550	43750551	rs3025028	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.1	VEGFA	rs3025028-C	NR	3E-14		0.0219203	[0.016-0.028] unit decrease	Affymetrix [321169] (imputed)	N
918	chr6	43750762	43750763	rs143145866	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6p21.1	NR	rs143145866-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
918	chr6	43751074	43751075	rs3025033	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	6p21.1	VEGFA	rs3025033-G	0.148287	1E-10		0.020588947	[0.014-0.027] unit increase	Affymetrix [93095623] (imputed)	N
918	chr6	43753324	43753325	rs3025053	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.1	VEGFA	rs3025053-A	NR	2E-13		0.0320779	[0.024-0.041] unit decrease	Affymetrix [319769] (imputed)	N
918	chr6	43753324	43753325	rs3025053	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.1	VEGFA	rs3025053-A	NR	3E-13		0.0318013	[0.023-0.04] unit decrease	Affymetrix [319769] (imputed)	N
918	chr6	43753324	43753325	rs3025053	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.1	VEGFA	rs3025053-A	NR	6E-10		0.0272629	[0.019-0.036] unit decrease	Affymetrix [321114] (imputed)	N
918	chr6	43753324	43753325	rs3025053	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.1	VEGFA	rs3025053-A	NR	8E-12		0.0301568	[0.022-0.039] unit decrease	Affymetrix [321169] (imputed)	N
918	chr6	43753324	43753325	rs3025053	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	6p21.1	NR	rs3025053-A	NR	4E-12		0.0258	[0.019-0.033] unit decrease	Affymetrix [9000000] (imputed)	N
918	chr6	43753324	43753325	rs3025053	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6p21.1	NR	rs3025053-?	NR	9E-15				Affymetrix [~ 8270000] (imputed)	N
918	chr6	43753324	43753325	rs3025053	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6p21.1	NR	rs3025053-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
918	chr6	43756168	43756169	rs9472125	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6p21.1	NR	rs9472125-?	NR	5E-83				Affymetrix [~ 8270000] (imputed)	N
918	chr6	43756168	43756169	rs9472125	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6p21.1	NR	rs9472125-?	NR	1E-51				Affymetrix [~ 8270000] (imputed)	N
918	chr6	43756862	43756863	rs2146324	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	111,667 East Asian ancestry individuals	NA	6p21.1		rs2146324-C	0.885982	5E-11		0.0429186	[0.03-0.056] unit increase	Illumina [13471903] (imputed)	N
918	chr6	43756862	43756863	rs2146324	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls, 33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	6p21.1		rs2146324-C	NR	2E-12		0.0415	[0.03-0.053] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
918	chr6	43756862	43756863	rs2146324	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.1	VEGFA	rs2146324-A	NR	4E-72		0.0576164	[0.051-0.064] unit decrease	Affymetrix [319769] (imputed)	N
918	chr6	43756862	43756863	rs2146324	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.1	VEGFA	rs2146324-A	NR	2E-74		0.058582	[0.052-0.065] unit decrease	Affymetrix [319769] (imputed)	N
918	chr6	43756862	43756863	rs2146324	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.1	VEGFA	rs2146324-A	NR	2E-58		0.0522742	[0.046-0.059] unit decrease	Affymetrix [321114] (imputed)	N
918	chr6	43756862	43756863	rs2146324	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.1	VEGFA	rs2146324-A	NR	5E-68		0.0565843	[0.05-0.063] unit decrease	Affymetrix [321169] (imputed)	N
918	chr6	43756862	43756863	rs2146324	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Triglyceride levels	105,597 Japanese ancestry individuals	NA	6p21.1	VEGFA, LINC01512	rs2146324-?	NR	1E-10		0.04857	[0.034-0.063] unit increase novel	Illumina [6108953] (imputed)	N
918	chr6	43757081	43757082	rs4711750	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium HDL	115,082 European ancestry individuals	NA	6p21.1		rs4711750-T	0.500217	1E-8		0.0231606	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
918	chr6	43757081	43757082	rs4711750	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	6p21.1		rs4711750-?	NR	1E-21		0.00869145	[0.0069-0.0105] unit decrease	NR [NR]	N
918	chr6	43757081	43757082	rs4711750	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	6p21.1		rs4711750-A	NR	1E-12		0.0448	[0.032-0.057] unit increase	Affymetrix, Illumina [25845091] (imputed)	N
918	chr6	43757081	43757082	rs4711750	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Aspartate aminotransferase levels	386,570 British ancestry individuals, 10,617 Asian or Asian British individuals, 7,426 Black or Black British individuals, 2,321 Chinese ancestry individuals	NA	6p21.1	VEGFA	rs4711750-?	NR	1E-23		0.0023	[0.0017-0.0029] unit increase	Affymetrix [21347608] (imputed)	N
918	chr6	43757081	43757082	rs4711750	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Alanine aminotransferase levels	387,859 British ancestry individuals, 10,635 Asian or Asian British individuals, 7,468 Black or Black British individuals, 2,338 Chinese ancestry individuals	NA	6p21.1	VEGFA	rs4711750-?	NR	3E-28		0.0043	[0.0035-0.0051] unit increase	Affymetrix [21347608] (imputed)	N
918	chr6	43757081	43757082	rs4711750	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	6p21.1	VEGFA	rs4711750-T	0.499922	3E-16		0.00322879	[0.0025-0.004] unit decrease	Affymetrix [13995440] (imputed)	N
918	chr6	43757081	43757082	rs4711750	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	6p21.1	VEGFA, C6orf223	rs4711750-A	0.5	4E-14		7.58	z-score increase	Affymetrix [4312306] (imputed)	N
918	chr6	43757081	43757082	rs4711750	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	6p21.1	VEGFA	rs4711750-A	0.499289	1E-6		1.04	[1.02-1.05]	NR [8126035] (imputed)	N
918	chr6	43757081	43757082	rs4711750	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Triglyceride levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	6p21.1	VEGFA, LINC01512	rs4711750-?		8E-18		0.0334	[0.026-0.041] unit decrease	Illumina [31500000] (imputed)	N
918	chr6	43757081	43757082	rs4711750	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	6p21.1	VEGFA	rs4711750-A	0.500226	4E-21		0.02093351	[0.017-0.025] unit increase	Affymetrix [93095623] (imputed)	N
918	chr6	43757081	43757082	rs4711750	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	6p21.1	VEGFA	rs4711750-A	0.500197	4E-22		0.021331951	[0.017-0.026] unit increase	Affymetrix [93095623] (imputed)	N
918	chr6	43757081	43757082	rs4711750	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	6p21.1	VEGFA	rs4711750-T	0.49938	7E-12		0.012546	[0.009-0.0161] unit decrease	NR [13737936] (imputed)	N
918	chr6	43757081	43757082	rs4711750	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	6p21.1	VEGFA	rs4711750-A	0.4998	7E-11		0.0233458	[0.016-0.03] unit increase	Affymetrix [~ 2500000] (imputed)	N
918	chr6	43757081	43757082	rs4711750	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	6p21.1	VEGFA	rs4711750-A	0.5001	7E-9		0.02079017	[0.014-0.028] unit increase	Affymetrix [~ 2500000] (imputed)	N
918	chr6	43757081	43757082	rs4711750	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	6p21.1	VEGFA	rs4711750-A	0.4997	5E-11		0.02342795	[0.016-0.03] unit increase	Affymetrix [~ 2500000] (imputed)	N
918	chr6	43757255	43757256	rs115482652	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.1	VEGFA	rs115482652-G	NR	4E-13		0.0795007	[0.058-0.101] unit increase	Affymetrix [319769] (imputed)	N
918	chr6	43757255	43757256	rs115482652	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.1	VEGFA	rs115482652-G	NR	5E-13		0.0792246	[0.058-0.101] unit increase	Affymetrix [319769] (imputed)	N
918	chr6	43757255	43757256	rs115482652	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.1	VEGFA	rs115482652-G	NR	2E-9		0.0668303	[0.045-0.088] unit increase	Affymetrix [321114] (imputed)	N
918	chr6	43757255	43757256	rs115482652	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.1	VEGFA	rs115482652-G	NR	2E-10		0.0701728	[0.048-0.092] unit increase	Affymetrix [321169] (imputed)	N
918	chr6	43757895	43757896	rs998584	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	6p21.1		rs998584-C	0.517674	2E-22		0.0377916	[0.03-0.045] unit decrease	NR [11722792] (imputed)	N
918	chr6	43757895	43757896	rs998584	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	6p21.1		rs998584-C	0.517687	4E-21		0.0369679	[0.029-0.045] unit decrease	NR [11722792] (imputed)	N
918	chr6	43757895	43757896	rs998584	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	6p21.1		rs998584-C	0.517687	4E-20		0.0362781	[0.029-0.044] unit decrease	NR [11722792] (imputed)	N
918	chr6	43757895	43757896	rs998584	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	6p21.1		rs998584-C	0.517687	4E-24		0.0393813	[0.032-0.047] unit decrease	NR [11722792] (imputed)	N
918	chr6	43757895	43757896	rs998584	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large VLDL	115,082 European ancestry individuals	NA	6p21.1		rs998584-C	0.517687	1E-16		0.032612	[0.025-0.04] unit decrease	NR [11722792] (imputed)	N
918	chr6	43757895	43757896	rs998584	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small VLDL	115,082 European ancestry individuals	NA	6p21.1		rs998584-C	0.517687	2E-16		0.0326848	[0.025-0.04] unit decrease	NR [11722792] (imputed)	N
918	chr6	43757895	43757896	rs998584	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small LDL	115,082 European ancestry individuals	NA	6p21.1		rs998584-C	0.517687	4E-12		0.0277117	[0.02-0.036] unit decrease	NR [11722792] (imputed)	N
918	chr6	43757895	43757896	rs998584	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small HDL	115,082 European ancestry individuals	NA	6p21.1		rs998584-C	0.517687	2E-18		0.0349925	[0.027-0.043] unit decrease	NR [11722792] (imputed)	N
918	chr6	43757895	43757896	rs998584	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium VLDL	115,082 European ancestry individuals	NA	6p21.1		rs998584-C	0.517687	7E-16		0.0323468	[0.024-0.04] unit decrease	NR [11722792] (imputed)	N
918	chr6	43757895	43757896	rs998584	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large VLDL	115,082 European ancestry individuals	NA	6p21.1		rs998584-C	0.517687	1E-16		0.0328027	[0.025-0.041] unit decrease	NR [11722792] (imputed)	N
918	chr6	43757895	43757896	rs998584	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6p21.1		rs998584-C	0.517687	6E-10		0.024655	[0.017-0.032] unit decrease	NR [11722792] (imputed)	N
918	chr6	43757895	43757896	rs998584	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in VLDL	115,082 European ancestry individuals	NA	6p21.1		rs998584-C	0.517687	7E-16		0.0319616	[0.024-0.04] unit decrease	NR [11722792] (imputed)	N
918	chr6	43757895	43757896	rs998584	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in HDL	115,082 European ancestry individuals	NA	6p21.1		rs998584-C	0.517687	1E-9		0.0244552	[0.017-0.032] unit decrease	NR [11722792] (imputed)	N
918	chr6	43757895	43757896	rs998584	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total triglycerides levels	115,082 European ancestry individuals	NA	6p21.1		rs998584-C	0.517687	8E-15		0.030938	[0.023-0.039] unit decrease	NR [11722792] (imputed)	N
918	chr6	43757895	43757896	rs998584	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large VLDL	115,082 European ancestry individuals	NA	6p21.1		rs998584-C	0.517687	4E-16		0.0323467	[0.025-0.04] unit decrease	NR [11722792] (imputed)	N
918	chr6	43757895	43757896	rs998584	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large HDL	115,082 European ancestry individuals	NA	6p21.1		rs998584-C	0.517687	3E-18		0.0323856	[0.025-0.04] unit increase	NR [11722792] (imputed)	N
918	chr6	43757895	43757896	rs998584	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small VLDL	115,082 European ancestry individuals	NA	6p21.1		rs998584-C	0.517687	2E-10		0.0258949	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
918	chr6	43757895	43757896	rs998584	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium VLDL	115,082 European ancestry individuals	NA	6p21.1		rs998584-C	0.517687	3E-8		0.0228486	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
918	chr6	43757895	43757896	rs998584	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large VLDL	115,082 European ancestry individuals	NA	6p21.1		rs998584-C	0.517687	1E-16		0.0330401	[0.025-0.041] unit decrease	NR [11722792] (imputed)	N
918	chr6	43757895	43757896	rs998584	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	6p21.1		rs998584-C	0.517687	2E-21		0.0345011	[0.027-0.042] unit increase	NR [11722792] (imputed)	N
918	chr6	43757895	43757896	rs998584	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6p21.1		rs998584-C	0.517687	1E-10		0.0256583	[0.018-0.033] unit decrease	NR [11722792] (imputed)	N
918	chr6	43757895	43757896	rs998584	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in VLDL	115,082 European ancestry individuals	NA	6p21.1		rs998584-C	0.517687	3E-12		0.028141	[0.02-0.036] unit decrease	NR [11722792] (imputed)	N
918	chr6	43757895	43757896	rs998584	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	6p21.1		rs998584-C	0.517712	6E-21		0.0359415	[0.028-0.043] unit decrease	NR [11722792] (imputed)	N
918	chr6	43757895	43757896	rs998584	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to monounsaturated fatty acids	115,006 European ancestry individuals	NA	6p21.1		rs998584-C	0.517712	7E-11		0.0258306	[0.018-0.034] unit increase	NR [11722792] (imputed)	N
918	chr6	43757895	43757896	rs998584	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of monounsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	6p21.1		rs998584-C	0.517712	4E-12		0.0274841	[0.02-0.035] unit decrease	NR [11722792] (imputed)	N
918	chr6	43757895	43757896	rs998584	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	6p21.1		rs998584-C	0.517674	3E-17		0.0321319	[0.025-0.04] unit increase	NR [11722792] (imputed)	N
918	chr6	43757895	43757896	rs998584	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	6p21.1		rs998584-C	0.51768	1E-10		0.0259246	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
918	chr6	43757895	43757896	rs998584	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large VLDL	115,082 European ancestry individuals	NA	6p21.1		rs998584-C	0.517687	5E-15		0.0311428	[0.023-0.039] unit decrease	NR [11722792] (imputed)	N
918	chr6	43757895	43757896	rs998584	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large HDL	115,082 European ancestry individuals	NA	6p21.1		rs998584-C	0.517687	2E-18		0.032558	[0.025-0.04] unit increase	NR [11722792] (imputed)	N
918	chr6	43757895	43757896	rs998584	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large VLDL	115,082 European ancestry individuals	NA	6p21.1		rs998584-C	0.517687	4E-17		0.033532	[0.026-0.041] unit decrease	NR [11722792] (imputed)	N
918	chr6	43757895	43757896	rs998584	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large HDL	115,082 European ancestry individuals	NA	6p21.1		rs998584-C	0.517687	1E-19		0.0330573	[0.026-0.04] unit increase	NR [11722792] (imputed)	N
918	chr6	43757895	43757896	rs998584	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6p21.1		rs998584-C	0.517687	7E-12		0.0270693	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
918	chr6	43757895	43757896	rs998584	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in VLDL	115,082 European ancestry individuals	NA	6p21.1		rs998584-C	0.517687	6E-10		0.0252385	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
918	chr6	43757895	43757896	rs998584	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	6p21.1		rs998584-C	0.517674	4E-20		0.0336668	[0.026-0.041] unit decrease	NR [11722792] (imputed)	N
918	chr6	43757895	43757896	rs998584	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	6p21.1		rs998584-C	0.517687	4E-13		0.0285603	[0.021-0.036] unit increase	NR [11722792] (imputed)	N
918	chr6	43757895	43757896	rs998584	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	6p21.1		rs998584-C	0.517687	3E-14		0.03035	[0.023-0.038] unit decrease	NR [11722792] (imputed)	N
918	chr6	43757895	43757896	rs998584	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	6p21.1		rs998584-C	0.517687	8E-17		0.0332497	[0.025-0.041] unit decrease	NR [11722792] (imputed)	N
918	chr6	43757895	43757896	rs998584	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	6p21.1		rs998584-C	0.517687	2E-21		0.0345461	[0.027-0.042] unit increase	NR [11722792] (imputed)	N
918	chr6	43757895	43757896	rs998584	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6p21.1		rs998584-C	0.517687	4E-11		0.0261954	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
918	chr6	43757895	43757896	rs998584	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in VLDL	115,082 European ancestry individuals	NA	6p21.1		rs998584-C	0.517687	5E-8		0.0223295	[0.014-0.03] unit decrease	NR [11722792] (imputed)	N
918	chr6	43757895	43757896	rs998584	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large VLDL particles	115,082 European ancestry individuals	NA	6p21.1		rs998584-C	0.517687	6E-17		0.0331469	[0.025-0.041] unit decrease	NR [11722792] (imputed)	N
918	chr6	43757895	43757896	rs998584	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large HDL particles	115,082 European ancestry individuals	NA	6p21.1		rs998584-C	0.517687	5E-15		0.029193	[0.022-0.036] unit increase	NR [11722792] (imputed)	N
918	chr6	43757895	43757896	rs998584	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small VLDL particles	115,082 European ancestry individuals	NA	6p21.1		rs998584-C	0.517687	2E-11		0.0271221	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
918	chr6	43757895	43757896	rs998584	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large VLDL particles	115,082 European ancestry individuals	NA	6p21.1		rs998584-C	0.517687	1E-16		0.0330675	[0.025-0.041] unit decrease	NR [11722792] (imputed)	N
918	chr6	43757895	43757896	rs998584	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	6p21.1		rs998584-C	0.517687	8E-22		0.0347735	[0.028-0.042] unit increase	NR [11722792] (imputed)	N
918	chr6	43757895	43757896	rs998584	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of chylomicrons and extremely large VLDL particles	115,082 European ancestry individuals	NA	6p21.1		rs998584-C	0.517687	2E-11		0.0266482	[0.019-0.034] unit decrease	NR [11722792] (imputed)	N
918	chr6	43757895	43757896	rs998584	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	6p21.1		rs998584-C	0.517687	3E-16		0.0326367	[0.025-0.04] unit increase	NR [11722792] (imputed)	N
918	chr6	43757895	43757896	rs998584	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	6p21.1		rs998584-C	0.517687	3E-21		0.0371634	[0.029-0.045] unit increase	NR [11722792] (imputed)	N
918	chr6	43757895	43757896	rs998584	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large VLDL	115,082 European ancestry individuals	NA	6p21.1		rs998584-C	0.517687	2E-11		0.0272152	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
918	chr6	43757895	43757896	rs998584	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	6p21.1		rs998584-C	0.517687	2E-21		0.0352978	[0.028-0.043] unit increase	NR [11722792] (imputed)	N
918	chr6	43757895	43757896	rs998584	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large VLDL	115,082 European ancestry individuals	NA	6p21.1		rs998584-C	0.517687	6E-11		0.0266285	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
918	chr6	43757895	43757896	rs998584	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	6p21.1		rs998584-C	0.517687	2E-25		0.0381661	[0.031-0.045] unit increase	NR [11722792] (imputed)	N
918	chr6	43757895	43757896	rs998584	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6p21.1		rs998584-C	0.517687	2E-11		0.0266728	[0.019-0.034] unit decrease	NR [11722792] (imputed)	N
918	chr6	43757895	43757896	rs998584	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	6p21.1		rs998584-C	0.517687	3E-19		0.0352938	[0.028-0.043] unit increase	NR [11722792] (imputed)	N
918	chr6	43757895	43757896	rs998584	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	6p21.1		rs998584-C	0.517687	3E-22		0.0376264	[0.03-0.045] unit increase	NR [11722792] (imputed)	N
918	chr6	43757895	43757896	rs998584	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	6p21.1		rs998584-C	0.517687	3E-13		0.0293486	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
918	chr6	43757895	43757896	rs998584	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	6p21.1		rs998584-C	0.517687	9E-20		0.0339631	[0.027-0.041] unit increase	NR [11722792] (imputed)	N
918	chr6	43757895	43757896	rs998584	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	6p21.1		rs998584-C	0.517687	4E-14		0.0304685	[0.023-0.038] unit decrease	NR [11722792] (imputed)	N
918	chr6	43757895	43757896	rs998584	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	6p21.1		rs998584-C	0.517687	9E-25		0.0374342	[0.03-0.045] unit increase	NR [11722792] (imputed)	N
918	chr6	43757895	43757896	rs998584	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6p21.1		rs998584-C	0.517687	4E-11		0.026229	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
918	chr6	43757895	43757896	rs998584	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for VLDL particles	115,082 European ancestry individuals	NA	6p21.1		rs998584-C	0.517687	6E-20		0.0351959	[0.028-0.043] unit decrease	NR [11722792] (imputed)	N
918	chr6	43757895	43757896	rs998584	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	6p21.1		rs998584-C	0.517687	6E-21		0.0343571	[0.027-0.042] unit increase	NR [11722792] (imputed)	N
918	chr6	43757895	43757896	rs998584	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	6p21.1		rs998584-A	NR	4E-72		0.0362	[0.032-0.04] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
918	chr6	43757895	43757896	rs998584	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	6p21.1		rs998584-A	NR	4E-22		0.0196	[0.016-0.024] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
918	chr6	43757895	43757896	rs998584	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	6p21.1		rs998584-A	NR	7E-56		0.0324	[0.028-0.037] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
918	chr6	43757895	43757896	rs998584	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	6p21.1		rs998584-A	NR	1E-16		0.0159	[0.012-0.02] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
918	chr6	43757895	43757896	rs998584	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting insulin	151,013 European ancestry individuals	NA	6p21.1	VEGFA	rs998584-A	0.485	2E-10		0.0123	[0.0086-0.016] unit increase	Affymetrix, Illumina [32635793] (imputed)	N
918	chr6	43757895	43757896	rs998584	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.1	VEGFA	rs998584-A	NR	2E-134		0.0695825	[0.064-0.075] unit increase	Affymetrix [319769] (imputed)	N
918	chr6	43757895	43757896	rs998584	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.1	VEGFA	rs998584-A	NR	2E-18		0.0274613	[0.021-0.034] unit increase	Affymetrix [323858] (imputed)	N
918	chr6	43757895	43757896	rs998584	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.1	VEGFA	rs998584-A	NR	7E-138		0.0704798	[0.065-0.076] unit increase	Affymetrix [319769] (imputed)	N
918	chr6	43757895	43757896	rs998584	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.1	VEGFA	rs998584-A	NR	8E-19		0.0277301	[0.022-0.034] unit increase	Affymetrix [127266] (imputed)	N
918	chr6	43757895	43757896	rs998584	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.1	VEGFA	rs998584-A	NR	2E-117		0.0655991	[0.06-0.071] unit increase	Affymetrix [321114] (imputed)	N
918	chr6	43757895	43757896	rs998584	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	6p21.1	VEGFA	rs998584-A	NR	3E-21		0.0303647	[0.024-0.037] unit decrease	Affymetrix [323858] (imputed)	N
918	chr6	43757895	43757896	rs998584	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.1	VEGFA	rs998584-A	NR	1E-16		0.0253536	[0.019-0.031] unit decrease	Affymetrix [323123] (imputed)	N
918	chr6	43757895	43757896	rs998584	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.1	VEGFA	rs998584-A	NR	6E-129		0.0689325	[0.063-0.075] unit increase	Affymetrix [321169] (imputed)	N
918	chr6	43757895	43757896	rs998584	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Triglycerides	429,011 European ancestry individuals	NA	6p21.1		rs998584-C	0.52	4E-96		0.04	mmol/L decrease	NR [NR] (imputed)	N
918	chr6	43757895	43757896	rs998584	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Sex hormone-binding globulin levels	389,354 European ancestry individuals	NA	6p21.1		rs998584-C	0.52	8E-19		0.016	nmol/L increase	NR [NR] (imputed)	N
918	chr6	43757895	43757896	rs998584	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	6p21.1		rs998584-C	0.52	2E-122				NR [NR] (imputed)	N
918	chr6	43757895	43757896	rs998584	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	High density lipoprotein cholesterol levels	392,965 European ancestry individuals	NA	6p21.1		rs998584-C	0.52	2E-83		0.035	mmol/L increase	NR [NR] (imputed)	N
918	chr6	43757895	43757896	rs998584	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	6p21.1		rs998584-C	0.52	1E-9		0.009	% increase	NR [NR] (imputed)	N
918	chr6	43757895	43757896	rs998584	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Aspartate aminotransferase levels	424,778 European ancestry individuals	NA	6p21.1		rs998584-C	0.52	4E-18		0.018	U/L decrease	NR [NR] (imputed)	N
918	chr6	43757895	43757896	rs998584	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Alanine aminotransferase levels	429,203 European ancestry individuals	NA	6p21.1		rs998584-C	0.52	3E-18		0.017	U/L decrease	NR [NR] (imputed)	N
918	chr6	43757895	43757896	rs998584	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body mass index and triglycerides (pairwise)	500,123 European ancestry individuals,16,962 East Asian, South Asian, Hispanic and African American ancestry individuals	NA	6p21.1	VEGFA	rs998584-C	0.496	3E-16				Affymetrix, Illumina [2331072] (imputed)	N
918	chr6	43757895	43757896	rs998584	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body mass index and coronary artery disease (pairwise)	464,176 European ancestry individuals, 59,353 East Asian, South Asian, Hispanic and African American ancestry individuals	NA	6p21.1	VEGFA	rs998584-C	0.496	5E-10				Affymetrix, Illumina [2331072] (imputed)	N
918	chr6	43757895	43757896	rs998584	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body mass index and HDL-C (pairwise)	509,429 European ancestry individuals, 16,962 East Asian, South Asian, Hispanic and African American ancestry individuals	NA	6p21.1	VEGFA	rs998584-C	0.496	6E-15				Affymetrix, Illumina [2331072] (imputed)	N
918	chr6	43757895	43757896	rs998584	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body fat percentage and triglycerides (pairwise)	268,505 European ancestry individuals, 10,072 East Asian, South Asian and African American ancestry individuals	NA	6p21.1	VEGFA	rs998584-C	0.496	3E-16				Affymetrix, Illumina [2331072] (imputed)	N
918	chr6	43757895	43757896	rs998584	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body fat percentage and HDL-C (pairwise)	277,811 European ancestry individuals, 10,022 East Asian, South Asian and African American ancestry individuals	NA	6p21.1	VEGFA	rs998584-C	0.496	3E-13				Affymetrix, Illumina [2331072] (imputed)	N
918	chr6	43757895	43757896	rs998584	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	6p21.1	VEGFA, C6orf223	rs998584-A	0.48	1E-16		8.29	z-score increase	Affymetrix [4314223] (imputed)	N
918	chr6	43757895	43757896	rs998584	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	High density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	6p21.1	VEGFA, LINC01512	rs998584-?		2E-15		0.0346	[0.026-0.043] unit increase	Illumina [31500000] (imputed)	N
918	chr6	43757895	43757896	rs998584	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	6p21.1	VEGFA, LINC01512	rs998584-?	NR	2E-14		0.0377906	[0.028-0.048] unit increase	Illumina [4804024] (imputed)	N
918	chr6	43757895	43757896	rs998584	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6p21.1	VEGFA	rs998584-A	0.482724	1E-29		0.025255688	[0.021-0.03] unit increase	Affymetrix [93095623] (imputed)	N
918	chr6	43757895	43757896	rs998584	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6p21.1	VEGFA	rs998584-A	0.482699	5E-30		0.02524789	[0.021-0.03] unit increase	Affymetrix [93095623] (imputed)	N
918	chr6	43757895	43757896	rs998584	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	6p21.1	VEGFA	rs998584-A	0.482625	4E-24		0.02241738	[0.018-0.027] unit increase	Affymetrix [93095623] (imputed)	N
918	chr6	43757895	43757896	rs998584	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	6p21.1	NR	rs998584-A	0.484259	9E-17		0.015791	[0.012-0.02] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
918	chr6	43757895	43757896	rs998584	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	6p21.1	VEGFA	rs998584-C	0.517272	5E-89		0.0398822	[0.036-0.044] unit decrease	Affymetrix [NR] (imputed)	N
918	chr6	43757895	43757896	rs998584	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	6p21.1	VEGFA	rs998584-C	0.517265	3E-71		0.0340915	[0.03-0.038] unit increase	Affymetrix [NR] (imputed)	N
918	chr6	43757895	43757896	rs998584	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	6p21.1	intergenic	rs998584-?	NR	7E-56		0.0414	[0.037-0.046] unit increase	Affymetrix [5701386] (imputed)	N
918	chr6	43757895	43757896	rs998584	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	6p21.1	intergenic	rs998584-?	NR	2E-10		0.0162	[0.012-0.021] unit increase	Affymetrix [5701386] (imputed)	N
918	chr6	43757895	43757896	rs998584	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	6p21.1	NR	rs998584-C	0.518211	2E-31		0.00942815	[0.0078-0.0111] unit increase	Affymetrix [16582909] (imputed)	N
918	chr6	43757895	43757896	rs998584	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	6p21.1	NR	rs998584-C	0.518211	7E-16		0.00736547	[0.0055-0.0092] unit increase	Affymetrix [16582965] (imputed)	N
918	chr6	43757895	43757896	rs998584	31589552	Lind L	2019-10-07	Metab Syndr Relat Disord	Genome-Wide Association Study of the Metabolic Syndrome in UK Biobank.	Metabolic syndrome	291,107 European ancestry individuals	NA	6p21.1	VEGFA	rs998584-A	0.481524	4E-27		0.0706852	[0.058-0.084] unit increase	Affymetrix [9463307] (imputed)	N
918	chr6	43757895	43757896	rs998584	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Waist-hip ratio	9,140 African American females, 11,555 Hispanic/Latino females, 1,843 Asian ancestry females, 1,715 Native Hawaiian ancestry females, 585 Native American ancestry females	NA	6p21.1	NR	rs998584-?	NR	2E-6		0.04128558	[0.024-0.058] unit increase	Illumina [30305130] (imputed)	N
918	chr6	43757895	43757896	rs998584	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Waist-hip ratio	10,286 African American individuals, 16,472 Hispanic/Latino individuals, 3,500 Asian ancestry individuals, 3,061 Native Hawaiian ancestry individuals, 585 Native American ancestry individuals	NA	6p21.1	NR	rs998584-?	NR	3E-10		0.04819281	[0.033-0.063] unit increase	Illumina [at least 21894105] (imputed)	N
918	chr6	43757895	43757896	rs998584	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Waist-hip ratio	1,146 African American males, 4,917 Hispanic/Latino males, 1,657 Asian ancestry males, 1,346 Native Hawaiian ancestry males	NA	6p21.1	NR	rs998584-?	NR	2E-6		0.0700422	[0.041-0.099] unit increase	Illumina [21894105] (imputed)	N
918	chr6	43757895	43757896	rs998584	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	6p21.1	NR	rs998584-?	NR	3E-6		0.01974122	[0.011-0.028] unit increase	Illumina [31978265] (imputed)	N
918	chr6	43757895	43757896	rs998584	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls	NA	6p21.1	VEGFA	rs998584-A	0.481178	5E-10		0.049987935	[0.034-0.066] unit increase	Affymetrix [7288503] (imputed)	N
918	chr6	43757895	43757896	rs998584	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls	NA	6p21.1	VEGFA	rs998584-A	0.482799	6E-12		0.038632303	[0.028-0.05] unit increase	Affymetrix [7288503] (imputed)	N
918	chr6	43757895	43757896	rs998584	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	Triglyceride levels	up to 23,508 African ancestry individuals, 4,649 Asian ancestry individuals, up to 77,047 European ancestry individuals, 6,705 Hispanic individuals	NA	6p21.1		rs998584-A	0.4255	3E-9		0.0153	[0.01-0.02] unit increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
918	chr6	43757895	43757896	rs998584	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	HDL cholesterol levels	up to 23,761 African ancestry individuals, 13,171 Asian ancestry individuals, up to 90,272 European ancestry individuals, 6,620 Hispanic individuals	NA	6p21.1		rs998584-A	0.4489	3E-8		0.0069	[0.0044-0.0094] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
918	chr6	43757895	43757896	rs998584	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	6p21.1		rs998584-?	NR	3E-145				NR [~ 8900000] (imputed)	N
918	chr6	43757895	43757896	rs998584	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	6p21.1		rs998584-?	NR	4E-14				NR [~ 8900000] (imputed)	N
918	chr6	43757895	43757896	rs998584	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	6p21.1		rs998584-?	NR	5E-10				NR [~ 8900000] (imputed)	N
918	chr6	43757895	43757896	rs998584	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	6p21.1	NR	rs998584-A	0.48	3E-168		0.05	[0.046-0.054] unit increase	Affymetrix [2446094] (imputed)	N
918	chr6	43757895	43757896	rs998584	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	6p21.1	NR	rs998584-A	0.48	5E-8				Affymetrix [2446094] (imputed)	N
918	chr6	43757895	43757896	rs998584	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	6p21.1	intergenic	rs998584-A	0.4455	2E-54		0.0431	[0.038-0.049] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
918	chr6	43757895	43757896	rs998584	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	6p21.1	intergenic	rs998584-A	0.4455	5E-40		0.0368	[0.031-0.042] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
918	chr6	43757895	43757896	rs998584	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p21.1		rs998584-?	NR	8E-15		0.0147753	[0.011-0.019] unit decrease	Affymetrix [20259828] (imputed)	N
918	chr6	43757895	43757896	rs998584	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.1	VEGFA	rs998584-A	0.485	3E-21	(women)	0.0503	[0.04-0.061] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
918	chr6	43757895	43757896	rs998584	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.1	VEGFA	rs998584-A	0.485	1E-19		0.0369	[0.029-0.045] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
918	chr6	43757895	43757896	rs998584	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6p21.1	VEGFA	rs998584-A	0.485	6E-17		0.0411	[0.031-0.051] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
918	chr6	43757895	43757896	rs998584	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6p21.1	VEGFA	rs998584-A	0.4844	4E-18	(women)	0.0556	[0.043-0.068] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
918	chr6	43757895	43757896	rs998584	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6p21.1	VEGFA	rs998584-A	0.4844	4E-18	(EA, women)	0.0556	[0.043-0.068] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
918	chr6	43757895	43757896	rs998584	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.1	VEGFA	rs998584-?	0.485	5E-21	(women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
918	chr6	43757895	43757896	rs998584	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.1	VEGFA	rs998584-?	0.485	5E-21	(EA, women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
918	chr6	43757895	43757896	rs998584	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.1	VEGFA	rs998584-?	0.485	1E-18				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
918	chr6	43757895	43757896	rs998584	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.1	VEGFA	rs998584-A	0.486	8E-24	(EA, women)	0.0542	[0.044-0.065] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
918	chr6	43757895	43757896	rs998584	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.1	VEGFA	rs998584-A	0.4738	3E-14		0.0295	[0.022-0.037] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
918	chr6	43757895	43757896	rs998584	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in inactive individuals	561 African American women, 352 Filipino ancestry women, 725 Indian ancestry women, 19,288 European ancestry women, 251 African American men, 4,654 Indian ancestry men, 11,681 European ancestry men, 959 European ancestry individuals	1,437 African American women, 5,184 European ancestry women, 64 African American men, 5,416 European ancestry men	6p21.1	VEGFA	rs998584-A	0.4939	1E-6		0.0373	[0.022-0.052] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
918	chr6	43757895	43757896	rs998584	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6p21.1	VEGFA	rs998584-A	0.4858	4E-19	(EA,women)	0.054	[0.042-0.066] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
918	chr6	43757895	43757896	rs998584	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6p21.1	VEGFA	rs998584-A	0.4738	2E-10		0.0286	[0.02-0.037] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
918	chr6	43757895	43757896	rs998584	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.1	VEGFA	rs998584-?	0.486	3E-25	(EA, women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
918	chr6	43757895	43757896	rs998584	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.1	VEGFA	rs998584-?	0.4738	1E-14				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
918	chr6	43757895	43757896	rs998584	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in non-smokers	77,113 European ancestry women, 47,319 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	6p21.1	VEGFA	rs998584-A	0.4672	4E-22	(women)	0.0547	[0.044-0.066] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
918	chr6	43757895	43757896	rs998584	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in non-smokers	77,113 European ancestry women, 47,319 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	6p21.1	VEGFA	rs998584-A	0.4672	4E-11		0.0286	[0.02-0.037] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
918	chr6	43757895	43757896	rs998584	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	6p21.1	VEGFA	rs998584-A	0.4672	2E-24	(women)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
918	chr6	43757895	43757896	rs998584	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	6p21.1	VEGFA	rs998584-A	0.4672	1E-13				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
918	chr6	43757895	43757896	rs998584	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	6p21.1	VEGFA	rs998584-A	0.4672	5E-25	(women)	0.0529	[0.043-0.063] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
918	chr6	43757895	43757896	rs998584	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	6p21.1	VEGFA	rs998584-A	0.4672	3E-6		0.0254	[0.015-0.036] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
918	chr6	43757895	43757896	rs998584	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	6p21.1	VEGFA	rs998584-A	0.4818	7E-9		0.02080482	[0.014-0.028] unit increase	Affymetrix [~ 2500000] (imputed)	N
918	chr6	43757895	43757896	rs998584	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	6p21.1	VEGFA	rs998584-A	0.4816	3E-13		0.0263027	[0.019-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
918	chr6	43757895	43757896	rs998584	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex x age interaction (4df test)	up to 43,776 European ancestry men aged <50, up to 50,526 European ancestry women aged <50, up to 69,944 European ancestry men aged >50, up to 88,129 European ancestry women aged >50	NA	6p21.1	VEGFA, SLC22A7, DLK2, XPO5, RSPH9, LOC100132354, MRPL4, SLC35B2, CRIP3, ABC10, POLH, C6orf223, TMEM63B, TCTE1, ZNF318, TJAP1, GTPBP2, CAPN11, LRRC73, MAD2L1BP, SLC29A1, YIPF3, MRPS18A, POLR1C, HSP90AB1, MIR4647	rs998584-A	0.485	3E-31				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
918	chr6	43757895	43757896	rs998584	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex interaction	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	6p21.1	VEGFA	rs998584-A	0.48	5E-10				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
918	chr6	43757895	43757896	rs998584	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI (age >50)	up to 69,944 European ancestry men, up to 88,129 European ancestry women	NA	6p21.1	VEGFA, SLC22A7, DLK2, XPO5, RSPH9, LOC100132354, MRPL4, SLC35B2, CRIP3, ABC10, POLH, C6orf223, TMEM63B, TCTE1, ZNF318, TJAP1, GTPBP2, CAPN11, LRRC73, MAD2L1BP, SLC29A1, YIPF3, MRPS18A, POLR1C, HSP90AB1, MIR4647	rs998584-A	0.48488048765113	2E-19	(women)	0.0574	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
918	chr6	43757895	43757896	rs998584	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI (age <50)	up to 43,776 European ancestry men, up to 50,526 European ancestry women	NA	6p21.1	VEGFA, SLC22A7, DLK2, XPO5, RSPH9, LOC100132354, MRPL4, SLC35B2, CRIP3, ABC10, POLH, C6orf223, TMEM63B, TCTE1, ZNF318, TJAP1, GTPBP2, CAPN11, LRRC73, MAD2L1BP, SLC29A1, YIPF3, MRPS18A, POLR1C	rs998584-A	0.48	2E-14	(women)	0.064	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
918	chr6	43757895	43757896	rs998584	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	6p21.1	VEGFA, SLC22A7, DLK2, XPO5, RSPH9, LOC100132354, MRPL4, SLC35B2, CRIP3, ABC10, POLH, C6orf223, TMEM63B, TCTE1, ZNF318, TJAP1, GTPBP2, CAPN11, LRRC73, MAD2L1BP, SLC29A1, YIPF3, MRPS18A, POLR1C, HSP90AB1	rs998584-A	0.48488	7E-26		0.0574	units increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
918	chr6	43757895	43757896	rs998584	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	6p21.1	VEGFA	rs998584-C	0.521	3E-6		0.016	[0.009-0.0224] kg/m2 increase	Affymetrix, Illumina [2550021]	N
918	chr6	43757895	43757896	rs998584	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	6p21.1	VEGFA	rs998584-C	0.512	9E-7	(EA)	0.017	[0.01-0.024] kg/m2 increase	Affymetrix, Illumina [2550021]	N
918	chr6	43757895	43757896	rs998584	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p21.1	VEGFA	rs998584-A	0.4833	1E-29	(EA)	0.0432	[0.036-0.051] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
918	chr6	43757895	43757896	rs998584	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p21.1	VEGFA	rs998584-A	0.4827	7E-34	(EA, women)	0.0631	[0.053-0.073] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
918	chr6	43757895	43757896	rs998584	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p21.1	VEGFA	rs998584-A	0.4737	1E-28		0.0418	[0.034-0.049] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
918	chr6	43757895	43757896	rs998584	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p21.1	VEGFA	rs998584-A	0.4727	8E-33	(women)	0.061	[0.051-0.071] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
918	chr6	43757895	43757896	rs998584	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p21.1	VEGFA	rs998584-A	0.4847	6E-15	(EA)	0.0293	[0.022-0.037] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
918	chr6	43757895	43757896	rs998584	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p21.1	VEGFA	rs998584-A	0.4847	4E-30	(EA,women)	0.0564	[0.047-0.066] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
918	chr6	43757895	43757896	rs998584	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Triglycerides	94,595 European ancestry individuals	93,982 European ancestry individuals	6p21.1	VEGFA	rs998584-A	0.49	3E-15		0.49	[NR] mg/dL increase	NR [NR] (imputed)	N
918	chr6	43757895	43757896	rs998584	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	6p21.1	VEGFA	rs998584-A	0.49	2E-11		0.026	[NR] unit decrease	NR [NR] (imputed)	N
918	chr6	43757895	43757896	rs998584	22479202	Dastani Z	2012-03-29	PLoS Genet	Novel loci for adiponectin levels and their influence on type 2 diabetes and metabolic traits: a multi-ethnic meta-analysis of 45,891 individuals.	Adiponectin levels	29,347 European ancestry individuals	10,536 European ancestry individuals	6p21.1	VEGFA	rs998584-C	0.5	3E-8		0.03	[0.020-0.040] unit increase	Affymetrix, Illumina [NR] (imputed)	N
918	chr6	43758323	43758324	rs6899540	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.1	VEGFA	rs6899540-C	NR	2E-19		0.0353071	[0.028-0.043] unit decrease	Affymetrix [321114] (imputed)	N
918	chr6	43758323	43758324	rs6899540	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.1	VEGFA	rs6899540-C	NR	2E-19		0.0353663	[0.028-0.043] unit decrease	Affymetrix [321169] (imputed)	N
918	chr6	43758568	43758568	rs11283322	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.1	VEGFA	rs11283322-TAGGCCTTAAG	NR	4E-22		0.0378564	[0.03-0.046] unit decrease	Affymetrix [319769] (imputed)	N
918	chr6	43758568	43758568	rs11283322	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.1	VEGFA	rs11283322-TAGGCCTTAAG	NR	8E-23		0.0385393	[0.031-0.046] unit decrease	Affymetrix [319769] (imputed)	N
918	chr6	43758872	43758873	rs6905288	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6p21.1		rs6905288-G	0.431475	6E-16		0.0317618	[0.024-0.039] unit decrease	NR [11722792] (imputed)	N
918	chr6	43758872	43758873	rs6905288	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p21.1		rs6905288-G	0.431475	1E-10		0.0258318	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
918	chr6	43758872	43758873	rs6905288	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6p21.1		rs6905288-G	0.431475	8E-10		0.0245397	[0.017-0.032] unit decrease	NR [11722792] (imputed)	N
918	chr6	43758872	43758873	rs6905288	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6p21.1		rs6905288-G	0.431475	9E-16		0.0315038	[0.024-0.039] unit decrease	NR [11722792] (imputed)	N
918	chr6	43758872	43758873	rs6905288	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	6p21.1		rs6905288-G	0.431475	3E-11		0.0265888	[0.019-0.034] unit decrease	NR [11722792] (imputed)	N
918	chr6	43758872	43758873	rs6905288	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very small VLDL	115,082 European ancestry individuals	NA	6p21.1		rs6905288-G	0.431475	1E-9		0.02453	[0.017-0.032] unit decrease	NR [11722792] (imputed)	N
918	chr6	43758872	43758873	rs6905288	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium LDL	115,082 European ancestry individuals	NA	6p21.1		rs6905288-G	0.431475	2E-11		0.0272899	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
918	chr6	43758872	43758873	rs6905288	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large LDL	115,082 European ancestry individuals	NA	6p21.1		rs6905288-G	0.431475	5E-8		0.0222235	[0.014-0.03] unit decrease	NR [11722792] (imputed)	N
918	chr6	43758872	43758873	rs6905288	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in LDL	115,082 European ancestry individuals	NA	6p21.1		rs6905288-G	0.431475	2E-9		0.0245959	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
918	chr6	43758872	43758873	rs6905288	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	6p21.1		rs6905288-G	0.431486	2E-8		0.0225343	[0.015-0.03] unit increase	NR [11722792] (imputed)	N
918	chr6	43758872	43758873	rs6905288	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	6p21.1		rs6905288-G	0.431486	2E-10		0.02552	[0.018-0.033] unit increase	NR [11722792] (imputed)	N
918	chr6	43758872	43758873	rs6905288	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6p21.1		rs6905288-G	0.431475	6E-11		0.0261689	[0.018-0.034] unit increase	NR [11722792] (imputed)	N
918	chr6	43758872	43758873	rs6905288	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	6p21.1		rs6905288-G	0.431475	2E-12		0.0282005	[0.02-0.036] unit decrease	NR [11722792] (imputed)	N
918	chr6	43758872	43758873	rs6905288	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Monounsaturated fatty acid levels	115,006 European ancestry individuals	NA	6p21.1		rs6905288-G	0.431486	4E-8		0.0225611	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
918	chr6	43758872	43758873	rs6905288	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6p21.1		rs6905288-G	0.431475	5E-8		0.0225587	[0.014-0.031] unit increase	NR [11722792] (imputed)	N
918	chr6	43758872	43758873	rs6905288	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	6p21.1		rs6905288-G	0.431543	1E-12		0.028711	[0.021-0.037] unit increase	NR [11722792] (imputed)	N
918	chr6	43758872	43758873	rs6905288	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6p21.1		rs6905288-G	0.431475	2E-8		0.0225879	[0.015-0.03] unit increase	NR [11722792] (imputed)	N
918	chr6	43758872	43758873	rs6905288	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6p21.1		rs6905288-G	0.431475	4E-14		0.0298957	[0.022-0.038] unit increase	NR [11722792] (imputed)	N
918	chr6	43758872	43758873	rs6905288	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	6p21.1		rs6905288-G	0.431475	1E-18		0.034703	[0.027-0.042] unit increase	NR [11722792] (imputed)	N
918	chr6	43758872	43758873	rs6905288	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	6p21.1		rs6905288-G	0.431475	4E-10		0.0241831	[0.017-0.032] unit increase	NR [11722792] (imputed)	N
918	chr6	43758872	43758873	rs6905288	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	6p21.1		rs6905288-G	0.431475	2E-11		0.0275956	[0.02-0.036] unit increase	NR [11722792] (imputed)	N
918	chr6	43758872	43758873	rs6905288	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	6p21.1		rs6905288-G	0.431475	3E-13		0.0283226	[0.021-0.036] unit increase	NR [11722792] (imputed)	N
918	chr6	43758872	43758873	rs6905288	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6p21.1		rs6905288-G	0.431475	5E-15		0.0304837	[0.023-0.038] unit increase	NR [11722792] (imputed)	N
918	chr6	43758872	43758873	rs6905288	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6p21.1		rs6905288-G	0.431475	2E-17		0.0330579	[0.025-0.041] unit increase	NR [11722792] (imputed)	N
918	chr6	43758872	43758873	rs6905288	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	6p21.1		rs6905288-G	0.431464	2E-11		0.0265466	[0.019-0.034] unit increase	NR [11722792] (imputed)	N
918	chr6	43758872	43758873	rs6905288	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6p21.1		rs6905288-G	0.431475	7E-15		0.030528	[0.023-0.038] unit increase	NR [11722792] (imputed)	N
918	chr6	43758872	43758873	rs6905288	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p21.1		rs6905288-G	0.431475	2E-9		0.0241882	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
918	chr6	43758872	43758873	rs6905288	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6p21.1		rs6905288-G	0.431475	1E-16		0.0324602	[0.025-0.04] unit increase	NR [11722792] (imputed)	N
918	chr6	43758872	43758873	rs6905288	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	6p21.1		rs6905288-G	0.431475	5E-9		0.0236924	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
918	chr6	43758872	43758873	rs6905288	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	6p21.1	VEGFA	rs6905288-G	NR	5E-12		0.0203969	[0.015-0.026] unit increase	Affymetrix [321788] (imputed)	N
918	chr6	43758872	43758873	rs6905288	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.1	VEGFA	rs6905288-G	NR	2E-10		0.0180044	[0.012-0.024] unit increase	Affymetrix [321016] (imputed)	N
918	chr6	43758872	43758873	rs6905288	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	6p21.1	VEGFA	rs6905288-A	0.568971	6E-26		0.023340745	[0.019-0.028] unit increase	Affymetrix [93095623] (imputed)	N
918	chr6	43758872	43758873	rs6905288	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	6p21.1	VEGFA	rs6905288-A	0.568969	5E-17		0.019039016	[0.015-0.023] unit increase	Affymetrix [93095623] (imputed)	N
918	chr6	43758872	43758873	rs6905288	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	6p21.1	VEGFA	rs6905288-A	0.56898	4E-10		0.014021149	[0.0096-0.0184] unit increase	Affymetrix [93095623] (imputed)	N
918	chr6	43758872	43758873	rs6905288	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	6p21.1	VEGFA	rs6905288-A	0.568974	3E-20		0.020715183	[0.016-0.025] unit increase	Affymetrix [93095623] (imputed)	N
918	chr6	43758872	43758873	rs6905288	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x long total sleep time interaction (2df test)	at least 2,926 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, at least 7,664 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,906 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 31,986 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 317 East Asian ancestry long sleepers, up to 5,171 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 928 African American controls, 1,301 East Asian ancestry controls, up to 20,961 European ancestry controls, 10,064 Hispanic controls	6p21.1	VEGFA	rs6905288-?	NR	4E-11		0.01236	[0.0083-0.0164] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
918	chr6	43758872	43758873	rs6905288	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x short total sleep time interaction (2df test)	3,007 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,474 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, up to 11,901 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,567 European ancestry controls, 4,047 Hispanic/Latino controls	up to 221 African American short sleepers, 629 East Asian ancestry short sleepers, up to 9,585 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 2,504 East Asian ancestry controls, up to 38,027 European ancestry controls, 10,061 Hispanic controls	6p21.1	VEGFA	rs6905288-?	NR	3E-11		0.006359	[0.0045-0.0083] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
918	chr6	43758872	43758873	rs6905288	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6p21.1	NR	rs6905288-?	NR	1E-123				Affymetrix [~ 8270000] (imputed)	N
918	chr6	43758872	43758873	rs6905288	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6p21.1	NR	rs6905288-?	NR	1E-75				Affymetrix [~ 8270000] (imputed)	N
918	chr6	43758872	43758873	rs6905288	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Waist-hip ratio	10,286 African American individuals, 16,472 Hispanic/Latino individuals, 3,500 Asian ancestry individuals, 3,061 Native Hawaiian ancestry individuals, 585 Native American ancestry individuals	NA	6p21.1	NR	rs6905288-?	NR	2E-6		0.0359916	[0.021-0.051] unit increase	Illumina [at least 21894105] (imputed)	N
918	chr6	43758872	43758873	rs6905288	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	6p21.1		rs6905288-?	NR	9E-10				NR [~ 8900000] (imputed)	N
918	chr6	43758872	43758873	rs6905288	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	6p21.1		rs6905288-?	NR	1E-12				NR [~ 8900000] (imputed)	N
918	chr6	43758872	43758873	rs6905288	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	6p21.1	NR	rs6905288-A	0.5735	9E-140		0.0444	[0.041-0.048] unit increase	NR [~ 27400000] (imputed)	N
918	chr6	43758872	43758873	rs6905288	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	315,284 European ancestry male individuals	NA	6p21.1	NR	rs6905288-A	0.5735	9E-140		0.0444	[0.041-0.048] unit increase	NR [~ 27400000] (imputed)	N
918	chr6	43758872	43758873	rs6905288	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	6p21.1	NA	rs6905288-A	0.5735	2E-78		0.0327	[0.029-0.036] unit increase	NR [~ 27400000] (imputed)	N
918	chr6	43758872	43758873	rs6905288	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	6p21.1	NR	rs6905288-A	0.5735	2E-78		0.0327	[0.029-0.036] unit increase	NR [~ 27400000] (imputed)	N
918	chr6	43758872	43758873	rs6905288	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	6p21.1	NA	rs6905288-A	0.5735	2E-9		0.01	[0.0067-0.0133] unit decrease	NR [~ 27400000] (imputed)	N
918	chr6	43758872	43758873	rs6905288	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	6p21.1	VEGFA	rs6905288-A	0.5807	4E-12		0.0386	[0.028-0.05] unit increase	Affymetrix [at least 7947838] (imputed)	N
918	chr6	43758872	43758873	rs6905288	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	6p21.1	VEGFA	rs6905288-A	0.5697	2E-12		0.045	[0.032-0.058] unit increase	NR [8041861] (imputed)	N
918	chr6	43758872	43758873	rs6905288	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	6p21.1	VEGFA	rs6905288-A	0.57	2E-12		0.045	[0.033-0.057] unit increase	Affymetrix [7947838] (imputed)	N
918	chr6	43758872	43758873	rs6905288	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Triglyceride levels	28,183 East Asian ancestry individuals, 177,861 European ancestry individuals	10,857 Chinese ancestry individuals	6p21.1	VEGFA	rs6905288-A	0.602	6E-16	(Trans-ethnic initial)	0.0274	[0.02-0.034] unit increase (EA Beta values)	Affymetrix, Illumina [up to 1900000] (imputed)	N
918	chr6	43758872	43758873	rs6905288	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	HDL cholesterol levels	34,930 East Asian ancestry individuals, 187,167 European ancestry individuals	8,741 Chinese ancestry individuals	6p21.1	VEGFA	rs6905288-A	0.602	2E-12	(Trans-ethnic initial)	0.0238	[0.017-0.031] unit decrease (EA Beta values)	Affymetrix, Illumina [~ 1900000] (imputed)	N
918	chr6	43758872	43758873	rs6905288	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	HDL cholesterol levels	25,169 East Asian ancestry individuals	45,953 East Asian ancestry individuals	6p21.1	VEGFA	rs6905288-A	0.75	1E-11	(BMI adjusted)	0.0446	[0.031-0.059] unit decrease	Affymetrix, Illumina [~ 2400000] (imputed)	N
918	chr6	43758872	43758873	rs6905288	26785701	Wen W	2016-01-20	Sci Rep	Genome-wide association studies in East Asians identify new loci for waist-hip ratio and waist circumference.	Waist-to-hip ratio adjusted for body mass index	up to 39,869 East Asian individuals	up to 20,137 East Asian individuals, up to 209,947 individuals	6p21.1	VEGFA	rs6905288-A	0.7453090156	6E-8	(East Asian women)	0.041207645	[0.026-0.056] unit increase	Affymetrix, Illumina [at least 1850000] (imputed)	N
918	chr6	43758872	43758873	rs6905288	22319020	Davies RW	2012-02-07	Circ Cardiovasc Genet	A genome-wide association study for coronary artery disease identifies a novel susceptibility locus in the major histocompatibility complex.	Coronary heart disease	7,123 European ancestry cases, 6,826 European ancestry controls	5,211 European ancestry cases, 5,821 European ancestry controls	6p21.1	VEGFA	rs6905288-T	NR	7E-8		1.23	[NR]	Affymetrix [~ 5000000] (imputed)	N
918	chr6	43758872	43758873	rs6905288	20935629	Heid IM	2010-10-10	Nat Genet	Meta-analysis identifies 13 new loci associated with waist-hip ratio and reveals sexual dimorphism in the genetic basis of fat distribution.	Waist-hip ratio	Up to 77,167 European ancestry individuals	Up to 113,636 European ancestry individuals	6p21.1	VEGFA	rs6905288-A	0.56	6E-25		0.04	[NR] unit increase	Affymetrix, Illumina, Perlegen [up to 2850269] (imputed)	N
918	chr6	43759188	43759189	rs6905891	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p21.1	NR	rs6905891-A	0.106018	2E-13				Affymetrix, Illumina [23114412] (imputed)	N
918	chr6	43759188	43759189	rs6905891	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	6p21.1	NR	rs6905891-A	0.081391	3E-15		0.028203	[0.021-0.035] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
918	chr6	43759788	43759789	rs6458349	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	6p21.1		rs6458349-A	NR	4E-9		0.0132	[0.0087-0.0177] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
918	chr6	43759788	43759789	rs6458349	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	6p21.1		rs6458349-A	NR	4E-17		0.019	[0.014-0.024] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
918	chr6	43759788	43759789	rs6458349	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	Triglyceride levels	291,107 British ancestry individuals	NA	6p21.1	ACTG1P9	rs6458349-G	0.27692801	9E-26		0.0246054	[0.02-0.029] unit decrease	Affymetrix [9463307] (imputed)	N
918	chr6	43759788	43759789	rs6458349	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	High density lipoprotein cholesterol levels	291,107 British ancestry individuals	NA	6p21.1	ACTG1P9	rs6458349-G	0.27692801	2E-15		0.00804642	[0.0061-0.01] unit increase	Affymetrix [9463307] (imputed)	N
918	chr6	43760326	43760327	rs11967262	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6p21.1		rs11967262-G	0.488614	3E-25		0.022639671	[0.018-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
918	chr6	43760326	43760327	rs11967262	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	6p21.1	NR	rs11967262-G	0.4877	2E-15		0.0365	[0.027-0.046] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
918	chr6	43760326	43760327	rs11967262	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	6p21.1	NR	rs11967262-C	0.511808	1E-20		0.0109938	[0.0086-0.0134] unit increase	Affymetrix [16585854] (imputed)	N
918	chr6	43760326	43760327	rs11967262	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	6p21.1	NR	rs11967262-C	0.511808	4E-12		0.00941338	[0.0066-0.0122] unit increase	Affymetrix [16585866] (imputed)	N
918	chr6	43760326	43760327	rs11967262	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	161,168 British ancestry women	NA	6p21.1	NR	rs11967262-G	0.4874	1E-11		0.02396	[0.017-0.031] unit increase	Affymetrix [10549349] (imputed)	N
918	chr6	43760326	43760327	rs11967262	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	6p21.1	VEGFA, LINC01512	rs11967262-G	NR	6E-21	(EA)			Affymetrix, Illumina [NR] (imputed)	N
918	chr6	43760326	43760327	rs11967262	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	6p21.1	VEGFA, LINC01512	rs11967262-G	NR	3E-32				Affymetrix, Illumina [NR] (imputed)	N
918	chr6	43760326	43760327	rs11967262	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	6p21.1	VEGFA, LINC01512	rs11967262-G	NR	1E-8	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
918	chr6	43760326	43760327	rs11967262	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	6p21.1	VEGFA, LINC01512	rs11967262-G	NR	6E-34				Affymetrix, Illumina [NR] (imputed)	N
918	chr6	43760326	43760327	rs11967262	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	6p21.1	VEGFA, LINC01512	rs11967262-G	NR	4E-22	(EA)			Affymetrix, Illumina [NR] (imputed)	N
918	chr6	43760326	43760327	rs11967262	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	6p21.1	VEGFA, LINC01512	rs11967262-G	NR	1E-8	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
918	chr6	43760326	43760327	rs11967262	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	6p21.1	VEGFA, LINC01512	rs11967262-G	NR	9E-10	(EA)	0.017	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
918	chr6	43760326	43760327	rs11967262	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	6p21.1	VEGFA, LINC01512	rs11967262-G	NR	3E-16		0.015	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
918	chr6	43760326	43760327	rs11967262	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	6p21.1	VEGFA, LINC01512	rs11967262-G	NR	2E-10		0.013	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
918	chr6	43760326	43760327	rs11967262	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	6p21.1	VEGFA, LINC01512	rs11967262-G	NR	2E-22				Affymetrix, Illumina [NR] (imputed)	N
918	chr6	43760326	43760327	rs11967262	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	6p21.1	VEGFA, LINC01512	rs11967262-G	NR	1E-13	(EA)			Affymetrix, Illumina [NR] (imputed)	N
918	chr6	43760326	43760327	rs11967262	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	6p21.1	VEGFA, LINC01512	rs11967262-G	NR	7E-26				Affymetrix, Illumina [NR] (imputed)	N
918	chr6	43760326	43760327	rs11967262	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	6p21.1	VEGFA, LINC01512	rs11967262-G	NR	2E-16	(EA)			Affymetrix, Illumina [NR] (imputed)	N
918	chr6	43760326	43760327	rs11967262	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	6p21.1	VEGFA, LINC01512	rs11967262-G	NR	1E-6	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
918	chr6	43760326	43760327	rs11967262	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	6p21.1	VEGFA, LINC01512	rs11967262-G	NR	6E-11		0.006	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
918	chr6	43760326	43760327	rs11967262	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	6p21.1	VEGFA, LINC01512	rs11967262-G	NR	3E-7	(EA)	0.006	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
918	chr6	43760326	43760327	rs11967262	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	6p21.1	VEGFA, LINC01512	rs11967262-G	NR	3E-6		0.004191	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
918	chr6	43760326	43760327	rs11967262	30670697	Kilpelainen TO	2019-01-22	Nat Commun	Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity.	Triglycerides x physical activity interaction (2df test)	7,294 African American inactive individuals, 12,832 African American active individuals, 1,352 Asian ancestry inactive individuals, 3,049 Asian ancestry active individuals, 20,622 European ancestry inactive individuals, 51,480 European ancestry active individuals, 2,166 Hispanic or Latin American inactive individuals, 3,486 Hispanic or Latin American active individuals	580 African American inactive individuals, 1,540 African American active individuals, 1,217 South African Black ancestry inactive individuals, 389 South African Black ancestry active individuals, 765 East Asian ancestry inactive individuals, 1,814 East Asian ancestry active individuals,  724 South Asian ancestry inactive individuals, 1,424 South Asian ancestry active individuals, 32,456 European ancestry inactive individuals, 49,510 European ancestry active individuals, 2,619 Hispanic inactive individuals, 8,803 Hispanic active individuals	6p21.1	NR	rs11967262-C	0.5449	4E-25				Affymetrix, Illumina [at least 2500000] (imputed)	N
918	chr6	43760326	43760327	rs11967262	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	6p21.1	VEGFA	rs11967262-G	0.4855	9E-10		1.04	[1.03-1.05]	Affymetrix, Illumina [~ 27000000] (imputed)	N
918	chr6	43760326	43760327	rs11967262	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	6p21.1	intergenic	rs11967262-G	0.4889	5E-13		0.0259432	[0.019-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
918	chr6	43761644	43761645	rs68016381	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.1	VEGFA	rs68016381-T	NR	4E-8		0.0347765	[0.022-0.047] unit decrease	Affymetrix [321169] (imputed)	N
918	chr6	43764358	43764359	rs12204488	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.1	VEGFA	rs12204488-T	NR	3E-26		0.0349727	[0.029-0.041] unit decrease	Affymetrix [319769] (imputed)	N
918	chr6	43764358	43764359	rs12204488	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.1	VEGFA	rs12204488-T	NR	1E-26		0.0352729	[0.029-0.042] unit decrease	Affymetrix [319769] (imputed)	N
918	chr6	43764358	43764359	rs12204488	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.1	VEGFA	rs12204488-T	NR	4E-27		0.0359114	[0.029-0.042] unit decrease	Affymetrix [321114] (imputed)	N
918	chr6	43764358	43764359	rs12204488	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	6p21.1	VEGFA	rs12204488-T	NR	2E-8		0.0210946	[0.014-0.028] unit increase	Affymetrix [323858] (imputed)	N
918	chr6	43764358	43764359	rs12204488	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.1	VEGFA	rs12204488-T	NR	1E-26		0.0356099	[0.029-0.042] unit decrease	Affymetrix [321169] (imputed)	N
918	chr6	43764358	43764359	rs12204488	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	6p21.1	VEGFA	rs12204488-C	0.756811	3E-9		0.0135932	[0.0091-0.0181] unit decrease	Affymetrix [NR] (imputed)	N
918	chr6	43764550	43764551	rs1358980	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in HDL	115,082 European ancestry individuals	NA	6p21.1		rs1358980-C	0.517378	1E-12		0.0264965	[0.019-0.034] unit increase	NR [11722792] (imputed)	N
918	chr6	43764550	43764551	rs1358980	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p21.1		rs1358980-C	0.517378	2E-13		0.0290247	[0.021-0.037] unit increase	NR [11722792] (imputed)	N
918	chr6	43764550	43764551	rs1358980	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	6p21.1		rs1358980-C	0.517378	7E-15		0.030673	[0.023-0.038] unit decrease	NR [11722792] (imputed)	N
918	chr6	43764550	43764551	rs1358980	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	HDL cholesterol levels	115,082 European ancestry individuals	NA	6p21.1		rs1358980-C	0.517378	1E-18		0.0327046	[0.025-0.04] unit increase	NR [11722792] (imputed)	N
918	chr6	43764550	43764551	rs1358980	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p21.1		rs1358980-C	0.517378	6E-13		0.0284133	[0.021-0.036] unit increase	NR [11722792] (imputed)	N
918	chr6	43764550	43764551	rs1358980	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	6p21.1		rs1358980-C	0.517378	3E-14		0.0279993	[0.021-0.035] unit increase	NR [11722792] (imputed)	N
918	chr6	43764550	43764551	rs1358980	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	6p21.1		rs1358980-C	0.517378	2E-10		0.0240497	[0.017-0.031] unit increase	NR [11722792] (imputed)	N
918	chr6	43764550	43764551	rs1358980	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in HDL	115,082 European ancestry individuals	NA	6p21.1		rs1358980-C	0.517378	6E-14		0.0276815	[0.02-0.035] unit increase	NR [11722792] (imputed)	N
918	chr6	43764550	43764551	rs1358980	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium HDL	115,082 European ancestry individuals	NA	6p21.1		rs1358980-C	0.517378	3E-13		0.0281186	[0.021-0.036] unit increase	NR [11722792] (imputed)	N
918	chr6	43764550	43764551	rs1358980	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	6p21.1		rs1358980-C	0.517378	1E-19		0.0338109	[0.026-0.041] unit increase	NR [11722792] (imputed)	N
918	chr6	43764550	43764551	rs1358980	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	6p21.1		rs1358980-C	0.517378	8E-13		0.0274205	[0.02-0.035] unit increase	NR [11722792] (imputed)	N
918	chr6	43764550	43764551	rs1358980	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	74,970 East Asian ancestry individuals	NA	6p21.1		rs1358980-T	0.538888	8E-11		0.0307686	[0.021-0.04] unit decrease	Illumina [13465896] (imputed)	N
918	chr6	43764550	43764551	rs1358980	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p21.1	NR	rs1358980-T	0.483197	9E-14		0.016598826	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
918	chr6	43764550	43764551	rs1358980	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	6p21.1		rs1358980-T	0.483214	2E-13		0.0163843	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
918	chr6	43764550	43764551	rs1358980	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p21.1	NR	rs1358980-T	0.490836	4E-17				Affymetrix, Illumina [24649327] (imputed)	N
918	chr6	43764550	43764551	rs1358980	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	6p21.1	VEGFA	rs1358980-C	0.51685	7E-13		0.0150327	[0.011-0.019] unit decrease	Affymetrix [NR] (imputed)	N
918	chr6	43764550	43764551	rs1358980	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Waist-hip ratio	9,140 African American females, 11,555 Hispanic/Latino females, 1,843 Asian ancestry females, 1,715 Native Hawaiian ancestry females, 585 Native American ancestry females	NA	6p21.1	NR	rs1358980-?	NR	1E-6		0.04286449	[0.025-0.06] unit increase	Illumina [30305130] (imputed)	N
918	chr6	43764550	43764551	rs1358980	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Waist-hip ratio	10,286 African American individuals, 16,472 Hispanic/Latino individuals, 3,500 Asian ancestry individuals, 3,061 Native Hawaiian ancestry individuals, 585 Native American ancestry individuals	NA	6p21.1	NR	rs1358980-?	NR	2E-10		0.04949402	[0.034-0.065] unit increase	Illumina [at least 21894105] (imputed)	N
918	chr6	43764550	43764551	rs1358980	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Waist-hip ratio	1,146 African American males, 4,917 Hispanic/Latino males, 1,657 Asian ancestry males, 1,346 Native Hawaiian ancestry males	NA	6p21.1	NR	rs1358980-?	NR	9E-7		0.07266837	[0.044-0.102] unit increase	Illumina [21894105] (imputed)	N
918	chr6	43764550	43764551	rs1358980	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	High density lipoprotein cholesterol levels	70,657 Japanese ancestry individuals	NA	6p21.1	VEGFA, LINC01512	rs1358980-?	NR	3E-9		0.0313	[0.021-0.042] unit decrease novel	Illumina [6108953] (imputed)	N
918	chr6	43764550	43764551	rs1358980	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.1	VEGFA	rs1358980-T	0.4742	4E-21	(EA, women)	0.0531	[0.042-0.064] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
918	chr6	43764550	43764551	rs1358980	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.1	VEGFA	rs1358980-T	0.4742	1E-20	(EA)	0.0401	[0.032-0.049] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
918	chr6	43764550	43764551	rs1358980	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6p21.1	VEGFA	rs1358980-T	0.4742	1E-18	(EA)	0.0428	[0.033-0.052] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
918	chr6	43764550	43764551	rs1358980	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.1	VEGFA	rs1358980-?	0.4742	1E-20	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
918	chr6	43764550	43764551	rs1358980	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.1	VEGFA	rs1358980-T	0.4743	7E-16	(EA)	0.0323	[0.024-0.04] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
918	chr6	43764550	43764551	rs1358980	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in inactive individuals	561 African American women, 352 Filipino ancestry women, 725 Indian ancestry women, 19,288 European ancestry women, 251 African American men, 4,654 Indian ancestry men, 11,681 European ancestry men, 959 European ancestry individuals	1,437 African American women, 5,184 European ancestry women, 64 African American men, 5,416 European ancestry men	6p21.1	VEGFA	rs1358980-T	0.4747	1E-7	(EA)	0.0451	[0.028-0.062] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
918	chr6	43764550	43764551	rs1358980	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in inactive individuals	561 African American women, 352 Filipino ancestry women, 725 Indian ancestry women, 19,288 European ancestry women, 251 African American men, 4,654 Indian ancestry men, 11,681 European ancestry men, 959 European ancestry individuals	1,437 African American women, 5,184 European ancestry women, 64 African American men, 5,416 European ancestry men	6p21.1	VEGFA	rs1358980-T	0.4711	4E-10	(EA, women)	0.0699	[0.048-0.092] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
918	chr6	43764550	43764551	rs1358980	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6p21.1	VEGFA	rs1358980-T	0.4743	3E-11	(EA)	0.0305	[0.021-0.04] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
918	chr6	43764550	43764551	rs1358980	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.1	VEGFA	rs1358980-?	0.4743	2E-16	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
918	chr6	43764550	43764551	rs1358980	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI in non-smokers	75,379 European ancestry women, 45,811 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	6p21.1	VEGFA	rs1358980-T	0.4685	2E-8	(women)	0.0193	[0.013-0.026] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
918	chr6	43764550	43764551	rs1358980	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI in non-smokers	75,379 European ancestry women, 45,811 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	6p21.1	VEGFA	rs1358980-T	0.4685	1E-7		0.0154	[0.0097-0.0211] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
918	chr6	43764550	43764551	rs1358980	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (joint analysis main effects and smoking interaction)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	6p21.1	VEGFA	rs1358980-T	0.4685	5E-7				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
918	chr6	43764550	43764551	rs1358980	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (joint analysis main effects and smoking interaction)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	6p21.1	VEGFA	rs1358980-T	0.4685	3E-8	(women)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
918	chr6	43764550	43764551	rs1358980	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	6p21.1	VEGFA	rs1358980-T	0.4685	2E-26	(women)	0.0532	[0.043-0.063] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
918	chr6	43764550	43764551	rs1358980	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	6p21.1	VEGFA	rs1358980-T	0.4685	2E-22		0.0363	[0.029-0.044] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
918	chr6	43764550	43764551	rs1358980	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex interaction	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	6p21.1	NR	rs1358980-T	0.471382082060192	7E-10				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
918	chr6	43764550	43764551	rs1358980	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	Triglycerides	up to 62,166 European ancestry individuals	NA	6p21.1	VEGFA	rs1358980-T	0.47	4E-9		0.039	[0.025-0.053] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
918	chr6	43764550	43764551	rs1358980	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p21.1	VEGFA	rs1358980-T	0.4676	3E-27	(EA)	0.0392	[0.032-0.046] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
918	chr6	43764550	43764551	rs1358980	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p21.1	VEGFA	rs1358980-T	0.466	4E-34	(EA, women)	0.0595	[0.05-0.069] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
918	chr6	43764550	43764551	rs1358980	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p21.1	VEGFA	rs1358980-T	0.4628	1E-26		0.0376	[0.031-0.044] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
918	chr6	43764550	43764551	rs1358980	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p21.1	VEGFA	rs1358980-T	0.459	2E-33	(women)	0.0579	[0.048-0.067] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
918	chr6	43764550	43764551	rs1358980	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-hip ratio	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p21.1	VEGFA	rs1358980-T	0.4699	2E-24	(EA, women)	0.0486	[0.039-0.058] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
918	chr6	43764550	43764551	rs1358980	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-hip ratio	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p21.1	VEGFA	rs1358980-T	0.4699	2E-14	(EA)	0.027	[0.02-0.034] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
918	chr6	43764550	43764551	rs1358980	23754948	Randall JC	2013-06-06	PLoS Genet	Sex-stratified genome-wide association studies including 270,000 individuals show sexual dimorphism in genetic loci for anthropometric traits.	Sexual dimorphism in anthropometric traits	up to 60,586 European ancestry males, up to 73,137 European ancestry females	up to 62,395 European ancestry males, up to 74,657 European ancestry females	6p21.1	VEGFA	rs1358980-T		2E-11	(WHRadjBMI, women)			Affymetrix, Illumina [2846694] (imputed)	N
918	chr6	43765532	43765533	rs1885659	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	6p21.1		rs1885659-A	0.262207	2E-9		0.0270782	[0.018-0.036] unit decrease	NR [11722792] (imputed)	N
918	chr6	43765532	43765533	rs1885659	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	6p21.1		rs1885659-A	0.262207	1E-10		0.0288626	[0.02-0.038] unit increase	NR [11722792] (imputed)	N
918	chr6	43765532	43765533	rs1885659	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	6p21.1		rs1885659-A	0.262207	2E-11		0.0300434	[0.021-0.039] unit increase	NR [11722792] (imputed)	N
918	chr6	43766537	43766538	rs540398642	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6p21.1	NR	rs540398642-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
918	chr6	43766928	43766929	rs114142949	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6p21.1	NR	rs114142949-?	NR	2E-13				Affymetrix [~ 8270000] (imputed)	N
918	chr6	43767284	43767285	rs9472127	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6p21.1	NR	rs9472127-?	NR	4E-15				Affymetrix [~ 8270000] (imputed)	N
918	chr6	43767284	43767285	rs9472127	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6p21.1	NR	rs9472127-?	NR	9E-9				Affymetrix [~ 8270000] (imputed)	N
918	chr6	43769588	43769589	rs73736137	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.1	VEGFA	rs73736137-C	NR	2E-12		0.0941037	[0.068-0.12] unit increase	Affymetrix [319769] (imputed)	N
918	chr6	43769588	43769589	rs73736137	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.1	VEGFA	rs73736137-C	NR	1E-12		0.0949795	[0.069-0.121] unit increase	Affymetrix [319769] (imputed)	N
918	chr6	43769588	43769589	rs73736137	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.1	VEGFA	rs73736137-C	NR	9E-11		0.087539	[0.061-0.114] unit increase	Affymetrix [321114] (imputed)	N
918	chr6	43769588	43769589	rs73736137	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.1	VEGFA	rs73736137-C	NR	7E-11		0.0881792	[0.062-0.115] unit increase	Affymetrix [321169] (imputed)	N
919	chr6	43778390	43778391	rs6913950	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Systolic blood pressure change trajectory	5,304 African American individuals	6,500 African American individuals	6p21.1	NR	rs6913950-T	0.8354	3E-7		0.0947	[0.058-0.131] mmHg decrease	Affymetrix, Illumina [NR] (imputed)	N
919	chr6	43781091	43781092	rs36184164	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.1	VEGFA	rs36184164-G	NR	8E-11		0.0284617	[0.02-0.037] unit increase	Affymetrix [319769] (imputed)	N
919	chr6	43781091	43781092	rs36184164	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.1	VEGFA	rs36184164-G	NR	3E-10		0.0276679	[0.019-0.036] unit increase	Affymetrix [319769] (imputed)	N
919	chr6	43781091	43781092	rs36184164	33536631	Bell S	2021-02-03	Commun Biol	A genome-wide meta-analysis yields 46 new loci associating with biomarkers of iron homeostasis.	Iron status biomarkers (ferritin levels)	246,139 European ancestry individuals	NA	6p21.1	VEGFA	rs36184164-G	0.126	6E-12		0.036	[0.025-0.046] SD increase	Affymetrix, Illumina [40000000] (imputed)	N
919	chr6	43785740	43785741	rs112222843	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.1	VEGFA	rs112222843-T	NR	6E-13		0.0533559	[0.039-0.068] unit decrease	Affymetrix [319769] (imputed)	N
919	chr6	43785740	43785741	rs112222843	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.1	VEGFA	rs112222843-T	NR	2E-13		0.0543235	[0.04-0.069] unit decrease	Affymetrix [319769] (imputed)	N
919	chr6	43785740	43785741	rs112222843	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.1	VEGFA	rs112222843-T	NR	8E-10		0.046008	[0.031-0.061] unit decrease	Affymetrix [321114] (imputed)	N
919	chr6	43785740	43785741	rs112222843	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.1	VEGFA	rs112222843-T	NR	2E-10		0.0478776	[0.033-0.063] unit decrease	Affymetrix [321169] (imputed)	N
919	chr6	43785740	43785741	rs112222843	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	6p21.1	NR	rs112222843-T	NR	4E-10		0.04	[0.027-0.053] unit decrease	Affymetrix [9000000] (imputed)	N
919	chr6	43785740	43785741	rs112222843	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6p21.1	NR	rs112222843-?	NR	3E-17				Affymetrix [~ 8270000] (imputed)	N
919	chr6	43787854	43787855	rs10948097	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.1	RP11-344J7.2	rs10948097-A	NR	5E-14		0.0329809	[0.024-0.042] unit decrease	Affymetrix [319769] (imputed)	N
919	chr6	43787854	43787855	rs10948097	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.1	RP11-344J7.2	rs10948097-A	NR	4E-14		0.0331918	[0.025-0.042] unit decrease	Affymetrix [319769] (imputed)	N
919	chr6	43787854	43787855	rs10948097	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.1	RP11-344J7.2	rs10948097-A	NR	9E-10		0.0270926	[0.018-0.036] unit decrease	Affymetrix [321114] (imputed)	N
919	chr6	43787854	43787855	rs10948097	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.1	RP11-344J7.2	rs10948097-A	NR	5E-9		0.0259394	[0.017-0.035] unit decrease	Affymetrix [321169] (imputed)	N
919	chr6	43789912	43789913	rs6910726	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.1	RP11-344J7.2	rs6910726-G	NR	1E-24		0.0311284	[0.025-0.037] unit decrease	Affymetrix [319769] (imputed)	N
919	chr6	43789912	43789913	rs6910726	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.1	RP11-344J7.2	rs6910726-G	NR	5E-25		0.0314125	[0.025-0.037] unit decrease	Affymetrix [319769] (imputed)	N
919	chr6	43789912	43789913	rs6910726	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.1	RP11-344J7.2	rs6910726-G	NR	3E-21		0.0290945	[0.023-0.035] unit decrease	Affymetrix [321114] (imputed)	N
919	chr6	43789912	43789913	rs6910726	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.1	RP11-344J7.2	rs6910726-G	NR	2E-19		0.0276926	[0.022-0.034] unit decrease	Affymetrix [321169] (imputed)	N
919	chr6	43793091	43793092	rs72862280	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.1	RP11-344J7.2	rs72862280-T	NR	9E-12		0.0604691	[0.043-0.078] unit decrease	Affymetrix [319769] (imputed)	N
919	chr6	43793091	43793092	rs72862280	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.1	RP11-344J7.2	rs72862280-T	NR	4E-12		0.0615876	[0.044-0.079] unit decrease	Affymetrix [319769] (imputed)	N
919	chr6	43793091	43793092	rs72862280	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.1	RP11-344J7.2	rs72862280-T	NR	2E-13		0.0659076	[0.048-0.083] unit decrease	Affymetrix [321114] (imputed)	N
919	chr6	43793091	43793092	rs72862280	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.1	RP11-344J7.2	rs72862280-T	NR	3E-13		0.0656726	[0.048-0.083] unit decrease	Affymetrix [321169] (imputed)	N
919	chr6	43793091	43793092	rs72862280	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6p21.1	NR	rs72862280-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
919	chr6	43795967	43795968	rs943072	21297633	Anderson CA	2011-02-06	Nat Genet	Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47.	Ulcerative colitis	6,687 European ancestry cases, 19,718 European ancestry controls	9,628 European ancestry cases, 12,917 European ancestry controls	6p21.1	intergenic	rs943072-G	0.09	2E-10		1.15	[1.08-1.23]	Affymetrix, Illumina [~ 1100000] (imputed)	N
919	chr6	43801099	43801100	rs56279768	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6p21.1	NR	rs56279768-?	NR	1E-21				Affymetrix [~ 8270000] (imputed)	N
919	chr6	43801099	43801100	rs56279768	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6p21.1	NR	rs56279768-?	NR	3E-17				Affymetrix [~ 8270000] (imputed)	N
919	chr6	43801653	43801654	rs62401198	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	6p21.1	NR	rs62401198-T	NR	9E-10		0.0208	[0.014-0.027] unit increase	Affymetrix [9000000] (imputed)	N
919	chr6	43801653	43801654	rs62401198	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	6p21.1		rs62401198-T	0.157261	2E-33		0.03644699	[0.031-0.042] unit decrease	Affymetrix [93095623] (imputed)	N
919	chr6	43801653	43801654	rs62401198	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	6p21.1		rs62401198-T	0.157251	1E-37		0.038815957	[0.033-0.045] unit decrease	Affymetrix [93095623] (imputed)	N
919	chr6	43801905	43801906	rs5875851	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	6p21.1		rs5875851-C	0.841946	8E-34		0.036530536	[0.031-0.042] unit increase	Affymetrix [93095623] (imputed)	N
919	chr6	43802562	43802563	rs4714699	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p21.1	VEGFA	rs4714699-C	0.3799	1E-6	(EA, women)	0.0241	[0.014-0.034] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
919	chr6	43802562	43802563	rs4714699	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p21.1	VEGFA	rs4714699-C	0.3747	2E-6	(women)	0.0233	[0.014-0.033] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
919	chr6	43804103	43804103	rs140626545	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hypothyroidism	30,155 European ancestry cases, 379,986 European ancestry controls, 1,114 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	6p21.1		rs140626545-AGTCGGT	NR	2E-10		0.0708	[0.049-0.093] unit increase	Affymetrix, Illumina [25801083] (imputed)	N
919	chr6	43804570	43804571	rs729761	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	6p21.1	VEGFA	rs729761-T	0.28814	1E-15		0.0177746	[0.013-0.022] unit decrease	Affymetrix [NR] (imputed)	N
919	chr6	43804570	43804571	rs729761	31985003	Boocock J	2020-01-27	Hum Mol Genet	Genomic dissection of 43 serum urate-associated loci provides multiple insights into molecular mechanisms of urate control.	Urate levels	110,238 European ancestry individuals, 21,471 East Asian individuals	NA	6p21.1	VEGFA	rs729761-T		8E-13		0.044	[0.032-0.056] mg/dl decrease	NR [NR] (imputed)	N
919	chr6	43804570	43804571	rs729761	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Creatinine levels	69,591 European ancestry individuals	NA	6p21.1	VEGFA, RP11-344J7.2	rs729761-G	0.705483	2E-11		0.045306	[0.033-0.057] unit increase	Illumina [24961484] (imputed)	N
919	chr6	43804570	43804571	rs729761	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	6p21.1		rs729761-?	NR	1E-11				NR [~ 8900000] (imputed)	N
919	chr6	43804570	43804571	rs729761	23263486	Kottgen A	2012-12-23	Nat Genet	Genome-wide association analyses identify 18 new loci associated with serum urate concentrations.	Urate levels	49,825 European ancestry males, 60,522 European ancestry females	Up to 32,813 European ancestry individuals	6p21.1	VEGFA	rs729761-T	0.30	8E-16		0.047	[0.036-0.058] mg/dl decrease	Affymetrix, Illumina, Perlegen [2450547] (imputed)	N
919	chr6	43804807	43804808	rs2396083	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	6p21.1		rs2396083-C	0.686737	3E-63		0.0401258	[0.035-0.045] unit increase	Affymetrix [93095623] (imputed)	N
919	chr6	43804807	43804808	rs2396083	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	6p21.1		rs2396083-C	0.686714	6E-61		0.039685946	[0.035-0.044] unit increase	Affymetrix [93095623] (imputed)	N
919	chr6	43804807	43804808	rs2396083	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	6p21.1		rs2396083-C	0.686711	9E-70		0.042648777	[0.038-0.047] unit increase	Affymetrix [93095623] (imputed)	N
919	chr6	43804807	43804808	rs2396083	29358691	Bonas-Guarch S	2018-01-22	Nat Commun	Re-analysis of public genetic data reveals a rare X-chromosomal variant associated with type 2 diabetes.	Type 2 diabetes	19,693 European ancestry cases, 107,308 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls		6p21.1	VEGFA	rs2396083-G	NR	1E-6		1.0869565		Affymetrix, Illumina [1918233] (imputed)	N
919	chr6	43804807	43804808	rs2396083	28333968	Nielsen TR	2017-03-23	PLoS One	A genome-wide association study of thyroid stimulating hormone and free thyroxine in Danish children and adolescents.	Plasma thyroid-stimulating hormone levels	1,680 Danish ancestry children and adolescents	2,129 Danish ancestry children and adolescents	6p21.1	VEGFA	rs2396083-C	0.593	2E-10		0.088	[0.061-0.115] unit increase	Illumina [8508717] (imputed)	N
919	chr6	43804824	43804825	rs2396084	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	6p21.1	RP11-344J7.2	rs2396084-A	NR	2E-8		0.0177421	[0.012-0.024] unit increase	Affymetrix [321788] (imputed)	N
919	chr6	43804824	43804825	rs2396084	28333968	Nielsen TR	2017-03-23	PLoS One	A genome-wide association study of thyroid stimulating hormone and free thyroxine in Danish children and adolescents.	Plasma thyroid-stimulating hormone levels	1,680 Danish ancestry children and adolescents	2,129 Danish ancestry children and adolescents	6p21.1	VEGFA	rs2396084-?	NR	7E-7		0.197	[0.2746-0.1191] unit decrease	Illumina [8508717] (imputed)	N
919	chr6	43804824	43804825	rs2396084	25743335	Taylor PN	2015-03-06	Nat Commun	Whole-genome sequence-based analysis of thyroid function.	Thyroid stimulating hormone levels	2,287 European ancestry whole-genome sequenced individuals, 14,048 European ancestry individuals	NA	6p21.1	VEGFA	rs2396084-A	0.287	4E-13		0.096	[0.071-0.121] unit decrease	Illumina [at least 9558836] (imputed)	N
919	chr6	43805361	43805362	rs744103	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Kidney volume	32,860 European ancestry individuals	NA	6p21.1	VEGFA	rs744103-?	NR	2E-11		0.0455	NR L decrease	Affymetrix [9390170] (imputed)	N
919	chr6	43805361	43805362	rs744103	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	6p21.1	NR	rs744103-A	0.69	2E-57		0.0318	[0.028-0.036] unit increase	NR [NR]	N
919	chr6	43805361	43805362	rs744103	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals, at least 88,461 European ancestry individuals	NA	6p21.1	VEGFA, LINC01512	rs744103-A	0.8678	7E-6	(Japanese)	0.0273	[0.015-0.039] unit increase	Illumina [1986983] (imputed)	N
919	chr6	43805361	43805362	rs744103	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals, at least 88,461 European ancestry individuals	NA	6p21.1	VEGFA, LINC01512	rs744103-A	0.692	5E-13	(EA)	0.032857142	[0.024-0.042] unit increase	Illumina [1986983] (imputed)	N
919	chr6	43805361	43805362	rs744103	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	6p21.1		rs744103-?	NR	5E-55				NR [~ 8900000] (imputed)	N
919	chr6	43805501	43805502	rs10223666	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	6p21.1		rs10223666-C	NR	8E-68		0.033	[0.029-0.037] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
919	chr6	43805501	43805502	rs10223666	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	150,266 East Asian ancestry individuals	NA	6p21.1		rs10223666-C	0.875381	2E-9		0.026107	[0.018-0.035] unit increase	Illumina [13478778] (imputed)	N
919	chr6	43805501	43805502	rs10223666	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	6p21.1		rs10223666-C	NR	5E-14		0.0181	[0.013-0.023] unit decrease	Affymetrix, Illumina [20535873] (imputed)	N
919	chr6	43805501	43805502	rs10223666	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.1	RP11-344J7.2	rs10223666-G	NR	9E-28		0.0333658	[0.027-0.039] unit decrease	Affymetrix [319769] (imputed)	N
919	chr6	43805501	43805502	rs10223666	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.1	RP11-344J7.2	rs10223666-G	NR	2E-28		0.0338177	[0.028-0.04] unit decrease	Affymetrix [319769] (imputed)	N
919	chr6	43805501	43805502	rs10223666	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.1	RP11-344J7.2	rs10223666-G	NR	2E-19		0.0278962	[0.022-0.034] unit decrease	Affymetrix [321114] (imputed)	N
919	chr6	43805501	43805502	rs10223666	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.1	RP11-344J7.2	rs10223666-G	NR	3E-19		0.0277143	[0.022-0.034] unit decrease	Affymetrix [321169] (imputed)	N
919	chr6	43805501	43805502	rs10223666	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6p21.1	NR	rs10223666-?	NR	2E-31				Affymetrix [~ 8270000] (imputed)	N
919	chr6	43805501	43805502	rs10223666	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6p21.1	NR	rs10223666-?	NR	1E-17				Affymetrix [~ 8270000] (imputed)	N
919	chr6	43805501	43805502	rs10223666	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	6p21.1	VEGFA	rs10223666-C	0.8628	7E-6	(East Asian)	0.0389	[0.022-0.056] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
919	chr6	43805501	43805502	rs10223666	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	6p21.1	VEGFA	rs10223666-C	0.7333	1E-32		0.0435	[0.036-0.051] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
919	chr6	43805501	43805502	rs10223666	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	6p21.1	VEGFA	rs10223666-C	0.7036	7E-28		0.046445	[0.038-0.055] mg/dL increase	Affymetrix, Illumina [8217339] (imputed)	N
919	chr6	43805501	43805502	rs10223666	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	6p21.1	NR	rs10223666-C	0.7484	1E-12	(men)	0.043	[0.031-0.055] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
919	chr6	43805501	43805502	rs10223666	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	6p21.1	NR	rs10223666-C	0.7381	3E-15	(women)	0.0422	[0.032-0.053] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
919	chr6	43805501	43805502	rs10223666	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in non-diabetics	152,624 European ancestry individuals, 36,369 African American individuals	NA	6p21.1	AK097853	rs10223666-C	0.705	1E-18		0.5	[0.39-0.61] unit decrease	Affymetrix [NR] (imputed)	N
919	chr6	43805501	43805502	rs10223666	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Hypothyroidism	17,558 European ancestry cases, 117,083 European ancestry controls	NA	6p21.1	VEGFA, C6orf223	rs10223666-?	NR	5E-10		1.0905125	[1.06-1.12]	Illumina [13676411] (imputed)	N
919	chr6	43806334	43806335	rs1317983	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Creatinine levels	110,051 European ancestry individuals	NA	6p21.1		rs1317983-T	0.306479	8E-14		0.0287029	[0.021-0.036] unit decrease	NR [11722792] (imputed)	N
919	chr6	43806334	43806335	rs1317983	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	6p21.1		rs1317983-C	NR	3E-50		0.0304	[0.026-0.034] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
919	chr6	43806334	43806335	rs1317983	32769997	Zhou W	2020-08-07	Nat Commun	GWAS of thyroid stimulating hormone highlights pleiotropic effects and inverse association with thyroid cancer.	Thyroid stimulating hormone levels	119,715 European ancestry individuals	NA	6p21.1	VEGFA, LINC01512	rs1317983-C	0.692742550160313	2E-86		0.0994	[0.089-0.109] SD increase	Illumina [22400000] (imputed)	N
919	chr6	43806334	43806335	rs1317983	28452372	Gorski M	2017-04-28	Sci Rep	1000 Genomes-based meta-analysis identifies 10 novel loci for kidney function.	Glomerular filtration rate (creatinine)	110,517 European ancestry individuals		6p21.1	VEGFA	rs1317983-T	NR	1E-13		0.008	[0.006-0.01] unit increase	Affymetrix, Illumina [up to 10971307] (imputed)	N
919	chr6	43806608	43806609	rs881858	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	6p21.1	NR	rs881858-A	NR	2E-46		0.0369	[0.032-0.042] unit increase	Affymetrix [9000000] (imputed)	N
919	chr6	43806608	43806609	rs881858	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	6p21.1	NR	rs881858-A	NR	5E-11		0.0169	[0.012-0.022] unit increase	Affymetrix [9000000] (imputed)	N
919	chr6	43806608	43806609	rs881858	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	6p21.1	NR	rs881858-A	NR	1E-59		0.0418	[0.037-0.047] unit decrease	Affymetrix [9000000] (imputed)	N
919	chr6	43806608	43806609	rs881858	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	6p21.1	NR	rs881858-A	NR	9E-56		0.0405	[0.035-0.046] unit increase	Affymetrix [9000000] (imputed)	N
919	chr6	43806608	43806609	rs881858	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	6p21.1	NR	rs881858-A	NR	3E-62		0.0428	[0.038-0.048] unit increase	Affymetrix [9000000] (imputed)	N
919	chr6	43806608	43806609	rs881858	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	6p21.1	NR	rs881858-A	NR	3E-12		0.0188	[0.014-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
919	chr6	43806608	43806609	rs881858	33418499	Lin BM	2021-01-06	EBioMedicine	Whole genome sequence analyses of eGFR in 23,732 people representing multiple ancestries in the NHLBI trans-omics for precision medicine (TOPMed) consortium.	Estimated glomerular filtration rate	8,459 African American individuals, 1,182 Hispanic/Latino individuals, 2,208 East Asian ancestry individuals, 11,837 European ancestry individuals, 46 Native American ancestry individuals	2,637 East Asian ancestry individuals, 6,767 Hispanic/Latino individuals, 3,031 Native American ancestry individuals	6p21.1		rs881858-?	NR	1E-7		0.46248803	[0.29-0.63] ml/min/1.73 m2 decrease	NR [43622178]	N
919	chr6	43806608	43806609	rs881858	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	6p21.1	LINC01512	rs881858-A	0.7138	5E-67		0.0054	[0.0048-0.006] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
919	chr6	43806608	43806609	rs881858	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	6p21.1	LINC01512	rs881858-A	0.6957	7E-62		0.0056	[0.0048-0.0064] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
919	chr6	43806608	43806609	rs881858	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	165,726 East Asian ancestry individuals	NA	6p21.1	LINC01512	rs881858-A	0.8572	5E-6		0.0045	[0.0025-0.0065] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
919	chr6	43806608	43806609	rs881858	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	6p21.1	VEGFA, RPL7L1, PPP2R5D	rs881858-G	0.2737	3E-28		11.033	NR z score increase	Illumina [26237160] (imputed)	N
919	chr6	43806608	43806609	rs881858	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	6p21.1	VEGFA	rs881858-?	NR	3E-22				Affymetrix, Illumina [at least 5248638] (imputed)	N
919	chr6	43806608	43806609	rs881858	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Glomerular filtration rate	143,658 Japanese ancestry individuals	NA	6p21.1	VEGFA, LINC01512	rs881858-?	NR	3E-8		0.03157	[0.02-0.043] unit decrease novel	Illumina [6108953] (imputed)	N
919	chr6	43806608	43806609	rs881858	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Creatinine levels	142,097 Japanese ancestry individuals	NA	6p21.1	VEGFA, LINC01512	rs881858-?	NR	4E-9		0.03291	[0.022-0.044] unit increase novel	Illumina [6108953] (imputed)	N
919	chr6	43806608	43806609	rs881858	27588450	Mahajan A	2016-09-01	Am J Hum Genet	Trans-ethnic Fine Mapping Highlights Kidney-Function Genes Linked to Salt Sensitivity.	Glomerular filtration rate	23,553 European ancestry individuals, 23,536 Japanese individuals, 16,325 Hispanic individuals, 8,224 African American individuals	NA	6p21.1	LOC100132354, VEGFA	rs881858-A	NR	2E-9		0.772	[0.52-1.02] unit decrease	Affymetrix, Illumina [at least 6581000] (imputed)	N
919	chr6	43806608	43806609	rs881858	27588450	Mahajan A	2016-09-01	Am J Hum Genet	Trans-ethnic Fine Mapping Highlights Kidney-Function Genes Linked to Salt Sensitivity.	Glomerular filtration rate	23,553 European ancestry individuals, 23,536 Japanese individuals, 16,325 Hispanic individuals, 8,224 African American individuals	NA	6p21.1	LOC100132354, VEGFA	rs881858-A	0.71	2E-7	(Hispanic)	1.375	[0.86-1.89] unit decrease	Affymetrix, Illumina [at least 6581000] (imputed)	N
919	chr6	43806608	43806609	rs881858	26831199	Pattaro C	2016-01-21	Nat Commun	Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function.	Glomerular filtration rate in non diabetics (creatinine)	118,448 European ancestry individuals	36,433 European ancestry individuals	6p21.1	SLC34A1	rs881858-A	NR	4E-14		0.0081	[0.0059-0.0103] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
919	chr6	43806608	43806609	rs881858	20383146	Kottgen A	2010-04-11	Nat Genet	New loci associated with kidney function and chronic kidney disease.	Chronic kidney disease	Up to 67,093 European ancestry individuals	Up to 22,982 European ancestry individuals	6p21.1	VEGFA	rs881858-G	0.28	9E-14	(eGFRcrea)	1.08	[0.007-0.015] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
919	chr6	43806733	43806734	rs13201802	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p21.1	NR	rs13201802-?	NR	6E-6		4.543	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
919	chr6	43806920	43806921	rs1317840	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.1	RP11-344J7.2	rs1317840-A	NR	1E-10		0.018448	[0.013-0.024] unit decrease	Affymetrix [321169] (imputed)	N
919	chr6	43809666	43809667	rs9472134	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.1	RP11-344J7.2	rs9472134-A	NR	8E-14		0.0212539	[0.016-0.027] unit increase	Affymetrix [319769] (imputed)	N
919	chr6	43809666	43809667	rs9472134	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.1	RP11-344J7.2	rs9472134-A	NR	6E-14		0.0213782	[0.016-0.027] unit increase	Affymetrix [319769] (imputed)	N
919	chr6	43809666	43809667	rs9472134	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.1	RP11-344J7.2	rs9472134-A	NR	9E-10		0.0176011	[0.012-0.023] unit increase	Affymetrix [321114] (imputed)	N
919	chr6	43809801	43809802	rs9472135	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	6p21.1	VEGFA	rs9472135-T	0.6999	2E-18		0.1444	[0.11-0.18] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
919	chr6	43809801	43809802	rs9472135	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	6p21.1	intergenic	rs9472135-C	0.3059	5E-23		0.03799032	[0.03-0.046] unit decrease	Affymetrix [~ 2500000] (imputed)	N
919	chr6	43809801	43809802	rs9472135	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	6p21.1	intergenic	rs9472135-C	0.3059	5E-21		0.03615679	[0.029-0.044] unit decrease	Affymetrix [~ 2500000] (imputed)	N
919	chr6	43809801	43809802	rs9472135	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	6p21.1	intergenic	rs9472135-C	0.306	4E-24		0.03868019	[0.031-0.046] unit decrease	Affymetrix [~ 2500000] (imputed)	N
919	chr6	43809801	43809802	rs9472135	26831199	Pattaro C	2016-01-21	Nat Commun	Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function.	Glomerular filtration rate (creatinine)	133,413 European ancestry individuals	42,166 European ancestry individuals, up to 16,471 African ancestry individuals, up to 42,296 Asian ancestry individuals	6p21.1	VEGFA	rs9472135-T	0.71	3E-15	(EA)	0.008	[0.006-0.01] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
919	chr6	43810020	43810021	rs9472136	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	6p21.1	RP11-344J7.2	rs9472136-T	NR	8E-9		0.0173079	[0.011-0.023] unit increase	Affymetrix [321788] (imputed)	N
919	chr6	43810020	43810021	rs9472136	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	6p21.1	RP11-344J7.2	rs9472136-T	0.398083	1E-8		0.035204247	[0.023-0.047] unit decrease	Affymetrix [7288503] (imputed)	N
919	chr6	43810468	43810469	rs9472137	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	6p21.1		rs9472137-T	NR	1E-11		0.0159	[0.011-0.02] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
919	chr6	43810468	43810469	rs9472137	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	6p21.1		rs9472137-T	NR	2E-10		0.0157	[0.011-0.021] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
919	chr6	43810586	43810586	rs201327451	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6p21.1		rs201327451-TTC	0.685493	4E-11		0.01590611	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
919	chr6	43810973	43810974	rs9369425	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	6p21.1	NA	rs9369425-A	0.7078	1E-23		0.0195	[0.016-0.023] unit increase	NR [~ 27400000] (imputed)	N
919	chr6	43810973	43810974	rs9369425	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	6p21.1	LOC107986598, VEGFA	rs9369425-G	0.291815284019485	1E-10		0.0546	[0.038-0.071] unit increase	NR [5035015] (imputed)	N
919	chr6	43811761	43811762	rs9472138	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	6p21.1		rs9472138-T	0.2868	4E-17		0.12728456	[0.097-0.157] mmHg decrease	Affymetrix, Illumina [242866] (imputed)	N
919	chr6	43811761	43811762	rs9472138	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p21.1	NR	rs9472138-T	0.291366	1E-13		0.01794543	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
919	chr6	43811761	43811762	rs9472138	24509480	Mahajan A	2014-02-09	Nat Genet	Genome-wide trans-ancestry meta-analysis provides insight into the genetic architecture of type 2 diabetes susceptibility.	Type 2 diabetes	12,171 European ancestry cases, 56,862 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls	21,491 European ancestry cases, 55,647 European ancestry controls	6p21.1	VEGFA	rs9472138-T		2E-7		1.06	[1.04-1.08]	Affymetrix, Illumina [2500000] (imputed)	N
919	chr6	43811761	43811762	rs9472138	23408906	Porcu E	2013-02-07	PLoS Genet	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 14,459 European ancestry females, up to 10,936 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males	NA	6p21.1	VEGFA	rs9472138-T	0.285	7E-16	(TSH)	0.079	[0.059-0.099] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
919	chr6	43811761	43811762	rs9472138	23408906	Porcu E	2013-02-07	PLoS Genet	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 14,459 European ancestry females, up to 10,936 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males	NA	6p21.1	VEGFA	rs9472138-T	0.285	6E-12	(TSH - Females)	0.09	[0.065-0.115] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
919	chr6	43811761	43811762	rs9472138	23408906	Porcu E	2013-02-07	PLoS Genet	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 14,459 European ancestry females, up to 10,936 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males	NA	6p21.1	VEGFA	rs9472138-T	0.285	5E-6	(TSH - Males)	0.065	[0.038-0.092] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
919	chr6	43811761	43811762	rs9472138	18372903	Zeggini E	2008-03-30	Nat Genet	Meta-analysis of genome-wide association data and large-scale replication identifies additional susceptibility loci for type 2 diabetes.	Type 2 diabetes	4,549 European ancestry cases, 5,579 European ancestry controls	24,194 European ancestry cases, 55,598 European ancestry controls	6p21.1	VEGFA	rs9472138-T	0.28	4E-6		1.06	[1.04-1.09]	Affymetrix, Illumina [2202892] (imputed)	N
919	chr6	43813340	43813341	rs62401199	29422769	Shah RL	2018-02-05	Mol Vis	A genome-wide association study of corneal astigmatism: The CREAM Consortium.	Corneal astigmatism	9,293 European ancestry cases, 12,957 European ancestry controls, 4,349 Asian ancestry cases, 4,771 Asian ancestry controls	NA	6p21.1	LINC01512	rs62401199-T	0.14	3E-6		1.15	[1.09-1.22]	NR [~ 55000000] (imputed)	N
919	chr6	43813710	43813711	rs9472139	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	6p21.1	NR	rs9472139-G	0.7397	1E-17		0.0376	[0.029-0.046] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
919	chr6	43814153	43814154	rs7765815	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	6p21.1		rs7765815-T	0.697893	1E-13		0.018102393	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
919	chr6	43814189	43814190	rs6458354	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	6p21.1	VEGFA	rs6458354-C	0.289	2E-12		1.05	[1.04-1.07]	Affymetrix, Illumina [~ 27000000] (imputed)	N
919	chr6	43814726	43814727	rs77635018	31668730	Cintho Ozahata M	2019-10-24	J Sex Med	Clinical and Genetic Predictors of Priapism in Sickle Cell Disease: Results from the Recipient Epidemiology and Donor Evaluation Study III Brazil Cohort Study.	Priapism in sickle cell disease	169 European, African, Hispanic or unknown ancestry cases, 433 European, African, Hispanic or unknown ancestry controls	NA	6p21.1	LINC02537	rs77635018-?	NR	9E-9		4.5454545	NR	Affymetrix [831797] (imputed)	N
919	chr6	43816376	43816377	rs2025704	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	6p21.1		rs2025704-C	0.45	2E-18		8.78	z score increase	Affymetrix [9061022] (imputed)	N
919	chr6	43816376	43816377	rs2025704	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	6p21.1	NR	rs2025704-C	0.4553	1E-17				NR [9056863] (imputed)	N
919	chr6	43816376	43816377	rs2025704	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	200,622 European ancestry individuals	NA	6p21.1	LINC01512	rs2025704-T	0.5535	2E-6		0.0083	[0.005-0.0116] unit increase	Affymetrix, Illumina [34064007] (imputed)	N
919	chr6	43817790	43817791	rs3734692	31630189	Casanova F	2019-10-20	Hum Mol Genet	A genome-wide association study implicates multiple mechanisms influencing raised urinary albumin-creatinine ratio.	Urinary albumin-to-creatinine ratio	437,027 European ancestry individuals	60,130 individuals	6p21.1	VEGFA	rs3734692-T	0.31	2E-13	(EA)	0.016	[0.012-0.02] unit increase	NR [12082474] (imputed)	N
919	chr6	43817790	43817791	rs3734692	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals, 6,795 African American individuals, 6,324 East Asian ancestry individuals, 2,335 South Asian ancestry individuals, 1,442 Hispanic individuals	NA	6p21.1	LINC01512	rs3734692-A	NR	1E-15		0.0173	[0.013-0.022] unit decrease	Affymetrix, Illumina [8034757] (imputed)	N
919	chr6	43817790	43817791	rs3734692	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals	NA	6p21.1	LOC100132354	rs3734692-A	0.6908	4E-16		0.0177228	[0.013-0.022] unit decrease	Affymetrix, Illumina [8603712] (imputed)	N
919	chr6	43817836	43817837	rs1536304	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical thickness (MOSTest)	26,502 European ancestry individuals	NA	6p21.1	CRB1, DENND1B	rs1536304-?		7E-10				NR [7428630] (imputed)	N
919	chr6	43817836	43817837	rs1536304	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	6p21.1	NR	rs1536304-?		7E-12				NR [7428630] (imputed)	N
919	chr6	43818941	43818942	rs9472142	34951656	Downie CG	2021-12-24	Diabetologia	Multi-ethnic GWAS and fine-mapping of glycaemic traits identify novel loci in the PAGE Study.	Fasting insulin adjusted for BMI	48,395 European ancestry, African American or Afro-Caribbean, Hispanic or Latin American, Asian ancestry, Other ancestry, Native American ancestry individuals	NA	6p21.1		rs9472142-T	0.28	6E-10		0.0462	[0.032-0.061] unit decrease	Affymetrix, Illumina [28462191] (imputed)	N
919	chr6	43819257	43819258	rs9349264	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	6p21.1	NR	rs9349264-G	NR	5E-9		0.02	[0.013-0.027] unit increase	Affymetrix [9000000] (imputed)	N
919	chr6	43820214	43820215	rs68137036	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	6p21.1	AK097853	rs68137036-A	0.7161	5E-34	(EA)	0.0047	[0.0039-0.0055] unit decrease	Affymetrix [NR] (imputed)	N
919	chr6	43821896	43821897	rs7357039	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6p21.1	RP11-344J7.2	rs7357039-A	0.300469	4E-11		0.015987258	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
919	chr6	43823723	43823724	rs6911520	26718567	Williams SR	2015-12-30	Neurology	Shared genetic susceptibility of vascular-related biomarkers with ischemic and recurrent stroke.	Creatinine levels in ischemic stroke	1,725 European ancestry cases, 258 African ancestry cases, 117 cases	NA	6p21.1	NR	rs6911520-?	NR	3E-6				Illumina [7500450] (imputed)	N
919	chr6	43825265	43825266	rs7758685	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	6p21.1		rs7758685-?	NR	2E-18				NR [9705931] (imputed)	N
919	chr6	43826626	43826627	rs943080	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	6p21.1		rs943080-T	0.49	7E-64		16.88	z score increase	Affymetrix [9061022] (imputed)	N
919	chr6	43826626	43826627	rs943080	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	6p21.1		rs943080-T	0.49	8E-26		10.5	z score increase	Affymetrix [9061022] (imputed)	N
919	chr6	43826626	43826627	rs943080	32843070	Winkler TW	2020-08-26	BMC Med Genomics	Genome-wide association meta-analysis for early age-related macular degeneration highlights novel loci and insights for advanced disease.	Early age-related macular degeneration	14,034 European ancestry cases, 91,214 European ancestry controls	NA	6p21.1	VEGFA	rs943080-T	0.51	5E-8		1.08	[1.05-1.11]	Affymetrix, Illumina [11702853] (imputed)	N
919	chr6	43826626	43826627	rs943080	26691988	Fritsche LG	2015-12-21	Nat Genet	A large genome-wide association study of age-related macular degeneration highlights contributions of rare and common variants.	Advanced age-related macular degeneration	16,144 European ancestry cases, 17,832 European ancestry controls	473 Asian ancestry cases, 1,099 Asian ancestry controls, 52 African ancestry cases, 361 African ancestry cases, 254 other non-European ancestry cases, 694 other non-European ancestry controls	6p21.1	VEGFA	rs943080-?	NR	1E-14	(EA)	1.1363636		Illumina [12023830] (imputed)	N
919	chr6	43826626	43826627	rs943080	23455636	Fritsche LG	2013-03-03	Nat Genet	Seven new loci associated with age-related macular degeneration.	Age-related macular degeneration	6,713 European ancestry cases, 48,402 European ancestry contols, 110 Southern Indian ancestry cases, 119 Southern Indian ancestry controls, 827 Japanese ancestry cases, 3,323 Japanese ancestry controls	9,070 European ancestry cases, 7,683 European ancestry contols, 461 East Asian ancestry cases, 547 East Asian ancestry controls	6p21.1	VEGFA	rs943080-T	0.51	9E-16		1.15	[1.12-1.18]	Affymetrix, Illumina [2442884] (imputed)	N
919	chr6	43828572	43828573	rs9462935	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.1	RP11-344J7.2	rs9462935-T	NR	7E-15		0.0258017	[0.019-0.032] unit decrease	Affymetrix [319769] (imputed)	N
919	chr6	43828572	43828573	rs9462935	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.1	RP11-344J7.2	rs9462935-T	NR	5E-15		0.0259403	[0.019-0.032] unit decrease	Affymetrix [319769] (imputed)	N
919	chr6	43828572	43828573	rs9462935	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.1	RP11-344J7.2	rs9462935-T	NR	3E-8		0.0185539	[0.012-0.025] unit decrease	Affymetrix [321114] (imputed)	N
919	chr6	43828572	43828573	rs9462935	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.1	RP11-344J7.2	rs9462935-T	NR	2E-8		0.0188764	[0.012-0.025] unit decrease	Affymetrix [321169] (imputed)	N
919	chr6	43828581	43828582	rs4711751	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	6p21.1	NR	rs4711751-T	0.4954	1E-17				NR [9056863] (imputed)	N
919	chr6	43828581	43828582	rs4711751	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	6p21.1	GLTSCR1L, VEGFA	rs4711751-?		2E-12				Affymetrix, Illumina [NR] (imputed)	N
919	chr6	43828581	43828582	rs4711751	21665990	Yu Y	2011-06-10	Hum Mol Genet	Common variants near FRK/COL10A1 and VEGFA are associated with advanced age-related macular degeneration.	Age-related macular degeneration	2,594 European ancestry cases, 4,134 European ancestry controls	5,640 European ancestry cases, 52,174 European ancestry controls	6p21.1	VEGFA	rs4711751-T	0.50	9E-9		1.15	[NR]	Affymetrix [6036699] (imputed)	N
919	chr6	43829628	43829629	rs7742835	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.1	RP11-344J7.2	rs7742835-A	NR	9E-9		0.0166856	[0.011-0.022] unit decrease	Affymetrix [319769] (imputed)	N
919	chr6	43829628	43829629	rs7742835	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.1	RP11-344J7.2	rs7742835-A	NR	1E-8		0.0166583	[0.011-0.022] unit decrease	Affymetrix [319769] (imputed)	N
919	chr6	43835885	43835886	rs34046483	32769997	Zhou W	2020-08-07	Nat Commun	GWAS of thyroid stimulating hormone highlights pleiotropic effects and inverse association with thyroid cancer.	Thyroid stimulating hormone levels	119,715 European ancestry individuals	NA	6p21.1	VEGFA, LINC01512	rs34046483-A	0.072544462305716	6E-14		0.0772	[0.057-0.097] SD increase	Illumina [22400000] (imputed)	N
919	chr6	43836069	43836070	rs6936668	31263163	Liu CT	2019-07-01	Sci Rep	Genome-wide Association Study of Change in Fasting Glucose over time in 13,807 non-diabetic European Ancestry Individuals.	Fasting glucose change (short-term)	8,195 European ancestry individuals	NA	6p21.1	VEGFA	rs6936668-T	0.958	1E-6		0.341	[0.20-0.48] unit increase	Affymetrix, Illumina [~ 25000000] (imputed)	N
919	chr6	43846079	43846080	rs4714707	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gastric polyp	1,337 East Asian ancestry cases, 158,249 East Asian ancestry controls	NA	6p21.1		rs4714707-C	0.733664717	1E-8		0.25221133	[0.17-0.34] unit decrease	Illumina [13427015] (imputed)	N
919	chr6	43855450	43855451	rs10948100	31830031	Chernus JM	2019-12-12	PLoS Genet	A candidate gene analysis and GWAS for genes associated with maternal nondisjunction of chromosome 21.	Maternal nondisjunction of chromosome 21 (mothers vs fathers)	705 mothers, 645 fathers	NA	6p21.1	NR	rs10948100-?		8E-7		1.4925373	[NR]	Illumina [NR] (imputed)	N
919	chr6	43855450	43855451	rs10948100	31830031	Chernus JM	2019-12-12	PLoS Genet	A candidate gene analysis and GWAS for genes associated with maternal nondisjunction of chromosome 21.	Maternal nondisjunction of chromosome 21 (MI error vs fathers)	535 mothers, 645 fathers	NA	6p21.1	NR	rs10948100-?		2E-6		1.58	[NR]	Illumina [NR] (imputed)	N
919	chr6	43855450	43855451	rs10948100	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	6p21.1	LINC01512	rs10948100-G	0.365617	2E-10		0.0120689	[0.0083-0.0158] unit decrease	NR [13737936] (imputed)	N
919	chr6	43855450	43855451	rs10948100	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p21.1		rs10948100-?	NR	4E-9		0.0124999	[0.0083-0.0167] unit decrease	Affymetrix [20259828] (imputed)	N
919	chr6	43855481	43855482	rs10948101	31830031	Chernus JM	2019-12-12	PLoS Genet	A candidate gene analysis and GWAS for genes associated with maternal nondisjunction of chromosome 21.	Maternal nondisjunction of chromosome 21 (mothers vs fathers)	705 mothers, 645 fathers	NA	6p21.1	NR	rs10948101-?		8E-7		1.4925373	[NR]	Illumina [NR] (imputed)	N
919	chr6	43855481	43855482	rs10948101	31830031	Chernus JM	2019-12-12	PLoS Genet	A candidate gene analysis and GWAS for genes associated with maternal nondisjunction of chromosome 21.	Maternal nondisjunction of chromosome 21 (MI error vs fathers)	535 mothers, 645 fathers	NA	6p21.1	NR	rs10948101-?		2E-6		1.58	[NR]	Illumina [NR] (imputed)	N
919	chr6	43868611	43868612	rs2182380	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6p21.1		rs2182380-?	NR	8E-9				NR [~ 8900000] (imputed)	N
919	chr6	43868985	43868986	rs1539508	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	6p21.1		rs1539508-G	0.452081	2E-13		0.016485985	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
919	chr6	43868985	43868986	rs1539508	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	6p21.1		rs1539508-G	0.452099	7E-21		0.02114744	[0.017-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
919	chr6	43868985	43868986	rs1539508	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	6p21.1		rs1539508-G	0.452106	3E-21		0.021393912	[0.017-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
919	chr6	43897726	43897727	rs9472155	21757650	Debette S	2011-07-14	Circ Res	Identification of cis- and trans-acting genetic variants explaining up to half the variation in circulating vascular endothelial growth factor levels.	Vascular endothelial growth factor levels	3,527 European ancestry individuals	1,727 European ancestry individuals	6p21.1	MGC45491, VEGF	rs9472155-T	0.22	2E-26				Affymetrix [2540233] (imputed)	N
919	chr6	43899527	43899528	rs864430	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.1	NR	rs864430-T	0.54875	9E-18	(VEGFA, 4867_15_2)	0.21131183	[0.16-0.26] unit decrease	Illumina [> 1000000] (imputed)	N
919	chr6	43899527	43899528	rs864430	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.1	NR	rs864430-T	0.54875	9E-18	(VEGFA, 2597_8_3)	0.2080099	[0.16-0.26] unit decrease	Illumina [> 1000000] (imputed)	N
919	chr6	43899527	43899528	rs864430	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.1	NR	rs864430-T	0.54875	6E-21	(VEGFA, 14032_2_3)	0.22940111	[0.18-0.28] unit decrease	Illumina [> 1000000] (imputed)	N
919	chr6	43899527	43899528	rs864430	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.1	NR	rs864430-T	0.54875	1E-9	(FLT1, 8231_122_3)	0.1475087	[0.1-0.195] unit increase	Illumina [> 1000000] (imputed)	N
919	chr6	43901183	43901184	rs6923866	25743335	Taylor PN	2015-03-06	Nat Commun	Whole-genome sequence-based analysis of thyroid function.	Thyroid stimulating hormone levels	2,287 European ancestry whole-genome sequenced individuals, 14,048 European ancestry individuals	NA	6p21.1	VEGFA	rs6923866-C	0.28	8E-15		0.102	[0.077-0.127] unit decrease	Illumina [at least 9558836] (imputed)	N
919	chr6	43904779	43904780	rs11755845	34524976	Nolan J	2021-09-01	Eur J Endocrinol	Genome-wide analysis of thyroid function in Australian adolescents highlights SERPINA7 and NCOA3.	Thyroid stimulating hormone levels	2,832 European ancestry individuals	1,104 European ancestry individuals	6p21.1		rs11755845-T	0.2557	8E-9		0.0525	mU/L decrease	Illumina [7522526] (imputed)	N
919	chr6	43904779	43904780	rs11755845	23408906	Porcu E	2013-02-07	PLoS Genet	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 14,459 European ancestry females, up to 10,936 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males	NA	6p21.1	VEGFA	rs11755845-T	0.266	3E-7	(TSH - Males)	0.076	[0.047-0.105] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
919	chr6	43904779	43904780	rs11755845	23408906	Porcu E	2013-02-07	PLoS Genet	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 14,459 European ancestry females, up to 10,936 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males	NA	6p21.1	VEGFA	rs11755845-T	0.266	2E-10	(TSH)	0.065	[0.045-0.085] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
919	chr6	43905036	43905037	rs9381266	32769997	Zhou W	2020-08-07	Nat Commun	GWAS of thyroid stimulating hormone highlights pleiotropic effects and inverse association with thyroid cancer.	Thyroid stimulating hormone levels	119,715 European ancestry individuals	NA	6p21.1	LINC01512	rs9381266-C	0.242165715415018	5E-52		0.0809	[0.071-0.091] SD decrease	Illumina [22400000] (imputed)	N
919	chr6	43906254	43906255	rs66760320	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Goiter	2,711 European ancestry cases, 456,942 European ancestry controls, 1,127 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	6p21.1		rs66760320-T	NR	1E-8		0.163	[0.11-0.22] unit increase	Affymetrix, Illumina [25841617] (imputed)	N
919	chr6	43906254	43906255	rs66760320	30367059	Teumer A	2018-10-26	Nat Commun	Genome-wide analyses identify a role for SLC17A4 and AADAT in thyroid hormone regulation.	Hyperthyroidism	1,840 European ancestry cases, 49,983 European ancestry controls	NA	6p21.1	VEGFA, LOC100132354	rs66760320-T	0.27	4E-8		0.192	[0.12-0.26] unit increase	Affymetrix, Illumina [5965951] (imputed)	N
920	chr6	43919694	43919695	rs9472159	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	6p21.1	NR	rs9472159-?		4E-22	(VEGFA)	0.3455	[NR] unit decrease	Illumina [NR]	N
920	chr6	43924829	43924830	rs4349809	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-12p70 levels	8,270 Finnish ancestry individuals	NA	6p21.1	VEGFA	rs4349809-G		3E-124		0.3777	[0.35-0.41] SD units decrease	NR [10700000] (imputed)	N
920	chr6	43924829	43924830	rs4349809	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-10 levels	7,681 Finnish ancestry individuals	NA	6p21.1	VEGFA	rs4349809-G		6E-67		0.2853	[0.25-0.32] SD units decrease	NR [10700000] (imputed)	N
920	chr6	43925525	43925526	rs4513773	32173896	Maffioletti E	2020-03-16	Drug Dev Res	Genetic determinants of circulating VEGF levels in major depressive disorder and electroconvulsive therapy response.	Vascular endothelial growth factor levels	145 European ancestry individuals	NA	6p21.1	NR	rs4513773-?	NR	4E-11		0.213	[0.15-0.27] unit decrease	Affymetrix [646354]	N
920	chr6	43925525	43925526	rs4513773	21757650	Debette S	2011-07-14	Circ Res	Identification of cis- and trans-acting genetic variants explaining up to half the variation in circulating vascular endothelial growth factor levels.	Vascular endothelial growth factor levels	3,527 European ancestry individuals	1,727 European ancestry individuals	6p21.1	MRPL14, MGC45491	rs4513773-G	0.47	1E-584				Affymetrix [2540233] (imputed)	N
920	chr6	43925606	43925607	rs6921438	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein VEGFB	5,367 Icelandic ancestry individuals	NA	6p21.1		rs6921438-A	0.48	3E-21		0.180781	[0.14-0.22] unit decrease	Illumina [7506463] (imputed)	N
920	chr6	43925606	43925607	rs6921438	33110245	Ruotsalainen SE	2020-10-27	Eur J Hum Genet	An expanded analysis framework for multivariate GWAS connects inflammatory biomarkers to functional variants and disease.	Inflammatory biomarkers (multivariate analysis)	6,890 Finnish ancestry individuals	NA	6p21.1	C6orf223, VEGFA	rs6921438-?	NR	3E-296				Illumina [11329225] (imputed)	N
920	chr6	43925606	43925607	rs6921438	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Vascular endothelial growth factor levels	21,758 European ancestry individuals	9,173 individuals	6p21.1		rs6921438-A	0.49	2E-389		0.4367	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
920	chr6	43925606	43925607	rs6921438	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.1	VEGFA	rs6921438-A	0.497	8E-71	(Vascular endothelial growth factor A, VEGFA.2597.8.3)	0.42	[0.38-0.46] unit decrease	Affymetrix [10572788] (imputed)	N
920	chr6	43925606	43925607	rs6921438	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.1	VEGFA	rs6921438-A	0.497	2E-234	(Vascular endothelial growth factor A, isoform 121, VEGFA.14032.2.3)	0.7	[0.66-0.74] unit decrease	Affymetrix [10572788] (imputed)	N
920	chr6	43925606	43925607	rs6921438	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Vascular endothelial growth factor levels	7,118 Finnish ancestry individuals	NA	6p21.1	VEGFA	rs6921438-G		2E-171		0.49	[0.46-0.52] SD units increase	NR [10700000] (imputed)	N
920	chr6	43925606	43925607	rs6921438	26910538	Choi SH	2016-02-24	PLoS Genet	Six Novel Loci Associated with Circulating VEGF Levels Identified by a Meta-analysis of Genome-Wide Association Studies.	Vascular endothelial growth factor levels	9541 European ancestry individuals, 1,115 Cilento (founder/genetic isolated) individuals, 897 Ogliastran (founder/genetic isolated) individuals, 1,759 Val Borbera (founder/genetic isolated) individuals	2,141 European ancestry individuals, 659 Sorbian (founder/genetic isolated) individuals	6p21.1	LOC100132354	rs6921438-A	0.46	2E-1449		0.64	[0.62-0.66] unit decrease	Affymetrix, Illumina [6705861] (imputed)	N
920	chr6	43925777	43925778	rs13206436	35264221	Caron B	2022-03-09	Genome Med	Integrative genetic and immune cell analysis of plasma proteins in healthy donors identifies novel associations involving primary immune deficiency genes.	VEGF plasma levels	400 French ancestry individuals	NA	6p21.1		rs13206436-G	NR	3E-23		0.269	[0.22-0.32] pg/mL decrease	Illumina [5201092] (imputed)	N
920	chr6	43926218	43926219	rs12205248	33227023	Wang Y	2020-11-23	PLoS Genet	Genome-wide association study identifies 16 genomic regions associated with circulating cytokines at birth.	Vascular endothelial growth factor A levels	8,318 European ancestry individuals	(see Ahola-Olli 2017)	6p21.1	NR	rs12205248-T	NR	1E-300		0.2483	[0.24-0.26] unit increase	Illumina [~ 9000000] (imputed)	N
920	chr6	43927049	43927050	rs7767396	31679650	Nath AP	2019-10-30	Am J Hum Genet	Multivariate Genome-Wide Association Analysis of a Cytokine Network Reveals Variants with Widespread Immune, Haematological, and Cardiometabolic Pleiotropy.	Cytokine network levels (multivariate analysis)	9,263 Finnish ancestry individuals	NA	6p21.1	VEGFA	rs7767396-?	NR	7E-306				Illumina [6022229] (imputed)	N
920	chr6	43927049	43927050	rs7767396	31679650	Nath AP	2019-10-30	Am J Hum Genet	Multivariate Genome-Wide Association Analysis of a Cytokine Network Reveals Variants with Widespread Immune, Haematological, and Cardiometabolic Pleiotropy.	Cytokine levels	9,263 Finnish ancestry individuals	NA	6p21.1	VEGFA	rs7767396-?	NR	3E-201	(VEGF-A)			Illumina [6022229] (imputed)	N
920	chr6	43927049	43927050	rs7767396	31217265	Sliz E	2019-06-19	J Med Genet	Genome-wide association study identifies seven novel loci associating with circulating cytokines and cell adhesion molecules in Finns.	Vascular endothelial growth factor levels	13,577 Finnish ancestry individuals	NA	6p21.1	VEGFA	rs7767396-G	0.422	5E-96		0.272	unit increase	Illumina [NR] (imputed)	N
920	chr6	43927049	43927050	rs7767396	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-5 levels	3,364 Finnish ancestry individuals	NA	6p21.1	NR	rs7767396-G		8E-10		0.1515	[0.1-0.2] SD units decrease	NR [10700000] (imputed)	N
920	chr6	43927137	43927146	rs547433428	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.1	NR	rs547433428-C	0.3	7E-118	(Vascular endothelial growth factor A, isoform 121, VEGFA.14032.2.3)	0.66	[0.6-0.72] unit decrease	Affymetrix [10572788] (imputed)	N
920	chr6	43928510	43928511	rs4320361	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-7 levels	3,409 Finnish ancestry individuals	NA	6p21.1	VEGFA	rs4320361-G		7E-39		0.3245	[0.28-0.37] SD units increase	NR [10700000] (imputed)	N
920	chr6	43928984	43928985	rs9472168	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-13 levels	3,557 Finnish ancestry individuals	NA	6p21.1	VEGFA	rs9472168-G		1E-65		0.4244	[0.38-0.47] SD units decrease	NR [10700000] (imputed)	N
920	chr6	43932222	43932223	rs11757903	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.1	NR	rs11757903-A	0.475	2E-223	(Vascular endothelial growth factor A, isoform 121, VEGFA.14032.2.3)	0.72	[0.68-0.76] unit decrease	Affymetrix [10572788] (imputed)	N
920	chr6	43939922	43939923	rs12214617	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Vascular endothelial growth factor levels	7,118 Finnish ancestry individuals	NA	6p21.1	NR	rs12214617-G		3E-16	(conditioned on rs6921438)	0.132	SD units decrease	NR [10700000] (imputed)	N
920	chr6	43941136	43941137	rs17287978	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	6p21.1		rs17287978-C	0.048076	1E-30		0.058796514	[0.049-0.069] unit decrease	Affymetrix [93095623] (imputed)	N
920	chr6	43941136	43941137	rs17287978	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	6p21.1		rs17287978-C	0.048091	2E-34		0.06298779	[0.053-0.073] unit decrease	Affymetrix [93095623] (imputed)	N
920	chr6	43941136	43941137	rs17287978	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	6p21.1		rs17287978-C	0.048081	3E-36		0.064812124	[0.055-0.075] unit decrease	Affymetrix [93095623] (imputed)	N
920	chr6	43941136	43941137	rs17287978	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	6p21.1		rs17287978-?	NR	5E-38				NR [~ 8900000] (imputed)	N
920	chr6	43941136	43941137	rs17287978	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	6p21.1	intergenic	rs17287978-C	0.0487	6E-16		0.0670582	[0.051-0.083] unit decrease	Affymetrix [~ 2500000] (imputed)	N
920	chr6	43941136	43941137	rs17287978	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	6p21.1	intergenic	rs17287978-C	0.0487	7E-15		0.06446452	[0.048-0.081] unit decrease	Affymetrix [~ 2500000] (imputed)	N
920	chr6	43941136	43941137	rs17287978	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	6p21.1	intergenic	rs17287978-C	0.0487	4E-18		0.0716895	[0.056-0.088] unit decrease	Affymetrix [~ 2500000] (imputed)	N
920	chr6	43941781	43941782	rs4714726	33110245	Ruotsalainen SE	2020-10-27	Eur J Hum Genet	An expanded analysis framework for multivariate GWAS connects inflammatory biomarkers to functional variants and disease.	Inflammatory biomarkers (multivariate analysis)	6,890 Finnish ancestry individuals	NA	6p21.1	C6orf223, VEGFA	rs4714726-?	NR	1E-11				Illumina [11329225] (imputed)	N
920	chr6	43942388	43942389	rs4714729	31679650	Nath AP	2019-10-30	Am J Hum Genet	Multivariate Genome-Wide Association Analysis of a Cytokine Network Reveals Variants with Widespread Immune, Haematological, and Cardiometabolic Pleiotropy.	Cytokine network levels (multivariate analysis)	9,263 Finnish ancestry individuals	NA	6p21.1	VEGFA	rs4714729-?	NR	7E-10	(conditioned on rs7767396)			Illumina [6022229] (imputed)	N
920	chr6	43942388	43942389	rs4714729	31679650	Nath AP	2019-10-30	Am J Hum Genet	Multivariate Genome-Wide Association Analysis of a Cytokine Network Reveals Variants with Widespread Immune, Haematological, and Cardiometabolic Pleiotropy.	Cytokine levels	9,263 Finnish ancestry individuals	NA	6p21.1	VEGFA	rs4714729-?	NR	9E-13	(VEGF-A, conditioned on rs7767396)			Illumina [6022229] (imputed)	N
920	chr6	43947397	43947398	rs1740073	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein VEGFA	5,366 Icelandic ancestry individuals	NA	6p21.1		rs1740073-T	0.3847	2E-27		0.215264	[0.18-0.25] unit increase	Illumina [7506463] (imputed)	N
920	chr6	43947397	43947398	rs1740073	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein VEGFA	5,364 Icelandic ancestry individuals	NA	6p21.1		rs1740073-T	0.3847	3E-31		0.229021	[0.19-0.27] unit increase	Illumina [7506463] (imputed)	N
920	chr6	43947397	43947398	rs1740073	26910538	Choi SH	2016-02-24	PLoS Genet	Six Novel Loci Associated with Circulating VEGF Levels Identified by a Meta-analysis of Genome-Wide Association Studies.	Vascular endothelial growth factor levels	9541 European ancestry individuals, 1,115 Cilento (founder/genetic isolated) individuals, 897 Ogliastran (founder/genetic isolated) individuals, 1,759 Val Borbera (founder/genetic isolated) individuals	2,141 European ancestry individuals, 659 Sorbian (founder/genetic isolated) individuals	6p21.1	C6orf223	rs1740073-T	0.36	4E-17		0.09	[0.07-0.11] unit increase	Affymetrix, Illumina [6705861] (imputed)	N
920	chr6	43970826	43970827	rs2295334	25629512	Cheng CY	2015-01-28	Nat Commun	New loci and coding variants confer risk for age-related macular degeneration in East Asians.	Exudative age-related macular degeneration	2,119 East Asian ancestry cases, 5,691 East Asian ancestry controls	4,226 East Asian ancestry cases, 10,289 East Asian ancestry controls	6p21.1	C6orf223	rs2295334-?	NR	6E-18		1.28	[NR]	Illumina [4471719] (imputed)	N
920	chr6	43978585	43978586	rs73736914	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Hematocrit	108,757 Japanese ancestry individuals	NA	6p21.1	NR	rs73736914-?	NR	4E-9		0.0408	[0.027-0.054] unit increase novel	Illumina [6108953] (imputed)	N
920	chr6	44008254	44008255	rs12525514	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 5 levels	252 European ancestry individuals	NA	6p21.1		rs12525514-G	NR	2E-6		0.26609	[0.16-0.37] unit decrease	Illumina [NR] (imputed)	N
920	chr6	44021285	44021286	rs9472202	25897833	Thompson AG	2015-04-21	Transl Psychiatry	Genome-wide association study of behavioural and psychiatric features in human prion disease.	Behavioral disturbance or psychiatric symptoms in prion disease	Up to 170 cases	NA	6p21.1	C6orf223	rs9472202-?	0.208	8E-6		3.32	[1.92-5.73]	Illumina [518938]	N
920	chr6	44025274	44025275	rs9462957	33227023	Wang Y	2020-11-23	PLoS Genet	Genome-wide association study identifies 16 genomic regions associated with circulating cytokines at birth.	Vascular endothelial growth factor A levels	8,318 European ancestry individuals	(see Ahola-Olli 2017)	6p21.1	NR	rs9462957-A	NR	9E-8		0.0377	[0.024-0.051] unit decrease	Illumina [~ 9000000] (imputed)	N
920	chr6	44025698	44025699	rs4714735	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure	35,269 European ancestry cases, 63,451 European ancestry controls	NA	6p21.1	NR	rs4714735-G	0.881897	3E-6		1.066098	[1.04-1.09]	Affymetrix [7791636] (imputed)	N
920	chr6	44026913	44026914	rs12199215	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Vascular endothelial growth factor levels	7,118 Finnish ancestry individuals	NA	6p21.1	NR	rs12199215-C		3E-13		0.1517	[0.11-0.19] SD units decrease	NR [10700000] (imputed)	N
920	chr6	44026913	44026914	rs12199215	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-12p70 levels	8,270 Finnish ancestry individuals	NA	6p21.1	NR	rs12199215-C		5E-11		0.1278	[0.09-0.165] SD units decrease	NR [10700000] (imputed)	N
920	chr6	44028058	44028059	rs58531363	29346644	Yan Q	2018-01-15	Hum Mol Genet	Genome-wide Analysis of Disease Progression in Age-related Macular Degeneration.	Disease progression in age-related macular degeneration (adjusted for baseline)	1,105 progressed eyes and 3,912 non-progressed eyes from 2,721 European ancestry individuals	NA	6p21.1	C6orf223, MRPL14	rs58531363-T	0.06	9E-7		1.87		Illumina [8974355] (imputed)	N
920	chr6	44030010	44030011	rs833805	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	6p21.1		rs833805-G	NR	5E-61		0.045	[0.04-0.05] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
920	chr6	44030010	44030011	rs833805	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	153,512 East Asian ancestry individuals	NA	6p21.1		rs833805-G	0.876735	1E-15		0.0380418	[0.029-0.047] unit increase	Illumina [13479135] (imputed)	N
920	chr6	44030010	44030011	rs833805	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	6p21.1		rs833805-G	NR	5E-71		0.0461	[0.041-0.051] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
920	chr6	44030010	44030011	rs833805	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	152,447 East Asian ancestry individuals	NA	6p21.1		rs833805-G	0.877	1E-12		0.0332476	[0.024-0.042] unit increase	Illumina [13478948] (imputed)	N
920	chr6	44030010	44030011	rs833805	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	6p21.1		rs833805-G	NR	6E-75		0.0485	[0.043-0.054] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
920	chr6	44030010	44030011	rs833805	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	153,015 East Asian ancestry individuals	NA	6p21.1		rs833805-G	0.876774	4E-15		0.0373762	[0.028-0.047] unit increase	Illumina [13478961] (imputed)	N
920	chr6	44030010	44030011	rs833805	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	6p21.1	NR	rs833805-A	0.12	4E-17		0.0264	[0.02-0.033] unit decrease	NR [NR]	N
920	chr6	44030010	44030011	rs833805	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	6p21.1	RP5-1120P11.1	rs833805-G	0.884706	1E-59		0.058339816	[0.051-0.065] unit increase	Affymetrix [93095623] (imputed)	N
920	chr6	44030010	44030011	rs833805	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	6p21.1	RP5-1120P11.1	rs833805-G	0.884768	4E-11		0.024236847	[0.017-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
920	chr6	44030010	44030011	rs833805	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	6p21.1	RP5-1120P11.1	rs833805-G	0.884699	2E-72		0.06509568	[0.058-0.072] unit increase	Affymetrix [93095623] (imputed)	N
920	chr6	44030010	44030011	rs833805	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	6p21.1	RP5-1120P11.1	rs833805-G	0.884695	9E-79		0.06802512	[0.061-0.075] unit increase	Affymetrix [93095623] (imputed)	N
920	chr6	44030010	44030011	rs833805	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p21.1	NR	rs833805-G	0.884847	1E-87				Affymetrix, Illumina [24332387] (imputed)	N
920	chr6	44030010	44030011	rs833805	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	6p21.1	NR	rs833805-G	0.885311	3E-79		0.060076	[0.054-0.066] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
920	chr6	44030010	44030011	rs833805	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	150,708 East Asian ancestry individuals	NA	6p21.1	NR	rs833805-A	0.122267	2E-13		0.041732	[0.031-0.053] SD units decrease	Affymetrix, Illumina [16709798] (imputed)	N
920	chr6	44030010	44030011	rs833805	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p21.1	NR	rs833805-G	0.884978	3E-100				Affymetrix, Illumina [24653286] (imputed)	N
920	chr6	44030010	44030011	rs833805	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	6p21.1	NR	rs833805-G	0.885303	9E-95		0.065863	[0.06-0.072] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
920	chr6	44030010	44030011	rs833805	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p21.1	NR	rs833805-G	0.884939	1E-115				Affymetrix, Illumina [24558453] (imputed)	N
920	chr6	44030010	44030011	rs833805	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	6p21.1	NR	rs833805-G	0.885305	5E-106		0.069865	[0.064-0.076] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
920	chr6	44030010	44030011	rs833805	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	142,940 East Asian ancestry individuals	NA	6p21.1	NR	rs833805-A	0.122824	2E-15		0.045524	[0.034-0.057] SD units decrease	Affymetrix, Illumina [16289021] (imputed)	N
920	chr6	44030010	44030011	rs833805	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p21.1	intergenic	rs833805-A		8E-54		0.055	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
920	chr6	44030010	44030011	rs833805	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	6p21.1		rs833805-?	NR	6E-70				NR [~ 8900000] (imputed)	N
920	chr6	44030010	44030011	rs833805	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Hemoglobin	108,769 Japanese ancestry individuals	NA	6p21.1	LOC101929705	rs833805-?	NR	4E-9		0.03792	[0.025-0.051] unit increase novel	Illumina [6108953] (imputed)	N
920	chr6	44030010	44030011	rs833805	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Hematocrit	108,757 Japanese ancestry individuals	NA	6p21.1	LOC101929705	rs833805-?	NR	8E-11		0.042	[0.029-0.055] unit increase novel	Illumina [6108953] (imputed)	N
920	chr6	44030010	44030011	rs833805	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	6p21.1	RP5-1120P11.1	rs833805-G	0.8865	3E-27		0.0651929	[0.053-0.077] unit increase	Affymetrix [~ 2500000] (imputed)	N
920	chr6	44030010	44030011	rs833805	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	6p21.1	RP5-1120P11.1	rs833805-G	0.8865	5E-31		0.06978199	[0.058-0.082] unit increase	Affymetrix [~ 2500000] (imputed)	N
920	chr6	44030010	44030011	rs833805	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	6p21.1	RP5-1120P11.1	rs833805-G	0.8865	6E-36		0.0750786	[0.063-0.087] unit increase	Affymetrix [~ 2500000] (imputed)	N
920	chr6	44031082	44031083	rs833806	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Red blood cell count	108,794 Japanese ancestry individuals	NA	6p21.1	LOC101929705	rs833806-?	NR	1E-9		0.04522	[0.031-0.06] unit increase novel	Illumina [6108953] (imputed)	N
921	chr6	44041399	44041400	rs72867280	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	6p21.1	DPP4	rs72867280-?		1E-8				NR [7428630] (imputed)	N
921	chr6	44048050	44048051	rs149372871	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 142,336 Japanese ancestry controls	NA	6p21.1	LOC101929705, MRPL14	rs149372871-?	NR	4E-8		0.11083	[0.071-0.15] unit decrease	Illumina [19707525] (imputed)	N
921	chr6	44053018	44053019	rs554214639	32180562	Kulyte A	2020-01-25	Mol Metab	Genome-wide association study of adipocyte lipolysis in the GENetics of adipocyte lipolysis (GENiAL) cohort.	Spontaneous adipocyte lipolysis	856 European ancestry individuals	NA	6p21.1	NR	rs554214639-?	0.847631	6E-6		0.111	[0.064-0.158] unit decrease	NR [9260588] (imputed)	N
921	chr6	44060575	44060576	rs12191873	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure in major depressive disorder	13,393 European ancestry cases, 9,487 European ancestry controls	NA	6p21.1	NR	rs12191873-A	0.865092	2E-6		1.1376565	[1.08-1.19]	Affymetrix [7791636] (imputed)	N
921	chr6	44065061	44065062	rs7742030	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	6p21.1		rs7742030-T	0.202795	8E-10		0.017191079	[0.012-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
921	chr6	44065310	44065311	rs7742824	23377640	GENDEP Investigators	2013-02-01	Am J Psychiatry	Common genetic variation and antidepressant efficacy in major depressive disorder: a meta-analysis of three genome-wide pharmacogenetic studies.	Major depressive disorder	Up to 2,256 European ancestry cases	NA	6p21.1	MRPL14	rs7742824-A	0.224	9E-6	(% improvement - 2 weeks)	1.185	[1.11-1.26]	Affymetrix, Illumina [1200000] (imputed)	N
921	chr6	44066457	44066458	rs12527942	26030696	Cho MH	2015-06-01	Am J Respir Crit Care Med	A Genome-Wide Association Study of Emphysema and Airway Quantitative Imaging Phenotypes.	Percentage gas trapping	3,243 European ancestry chronic obstructive pulmonary disease cases, 901 African American chronic obstructive pulmonary disease cases,  3,062 European ancestry controls, 2,132 African American controls	NA	6p21.1	MRPL14	rs12527942-T	NR	9E-7	(Cases)	0.32	[-0.3464-0.9864] unit increase	Illumina [6900000] (imputed)	N
921	chr6	44072725	44072726	rs57576544	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p21.1	NR	rs57576544-T	0.791334	3E-12				Affymetrix, Illumina [17210439] (imputed)	N
921	chr6	44072725	44072726	rs57576544	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	6p21.1	NR	rs57576544-T	0.796434	2E-13		0.017607	[0.013-0.022] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
921	chr6	44075578	44075579	rs56043653	34074324	Wan JY	2021-06-01	Diabetol Metab Syndr	Genome-wide association analysis of metabolic syndrome quantitative traits in the GENNID multiethnic family study.	Triglyceride levels	281 African American individuals from 73 families, 516 European ancestry individuals from 75 families, 125 Japanese American individuals from 15 families, 598 Mexican American individuals from 96 families	NA	6p21.1	AK024736, MRPL14	rs56043653-A	0.01	9E-7	(African American)	1.22	[0.73-1.71] unit increase	Illumina [up to 13042663] (imputed)	N
921	chr6	44096013	44096014	rs2096199	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	6p21.1		rs2096199-A	NR	8E-14		0.0191	[0.014-0.024] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
921	chr6	44104727	44104728	rs187955356	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	6p21.1		rs187955356-?	NR	2E-10				NR [~ 8900000] (imputed)	N
921	chr6	44124953	44124954	rs9394987	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	6p21.1	CAPN11	rs9394987-C	0.27548	7E-12		0.017159535	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
921	chr6	44127880	44127881	rs145593549	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-13 levels	3,557 Finnish ancestry individuals	NA	6p21.1	NR	rs145593549-T		4E-7		0.3346	[0.21-0.46] SD units increase	NR [10700000] (imputed)	N
921	chr6	44127880	44127881	rs145593549	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-12p70 levels	8,270 Finnish ancestry individuals	NA	6p21.1	NR	rs145593549-T		2E-9		0.2465	[0.16-0.33] SD units increase	NR [10700000] (imputed)	N
921	chr6	44139868	44139869	rs7763358	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Vascular endothelial growth factor levels	7,118 Finnish ancestry individuals	NA	6p21.1	NR	rs7763358-C		2E-12		0.2055	[0.15-0.26] SD units decrease	NR [10700000] (imputed)	N
922	chr6	44172062	44172063	rs35131064	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Chagas cardiomyopathy in Tripanosoma cruzi seropositivity	207 Brazilian ancestry cases, 306 Brazilian ancestry controls	NA	6p21.1	NR	rs35131064-?	NR	6E-6				Affymetrix [5486770] (imputed)	N
922	chr6	44185900	44185901	rs1057985	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6p21.1	RP1-302G2.5	rs1057985-C	0.665143	5E-16		0.019601261	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
922	chr6	44185900	44185901	rs1057985	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	6p21.1	RP1-302G2.5	rs1057985-C	0.665191	2E-12		0.0221042	[0.018-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
922	chr6	44186389	44186390	rs507964	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	6p21.1	SLC29A1	rs507964-G	0.665578	4E-10		0.015329701	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
922	chr6	44198361	44198362	rs45573936	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	6p21.1		rs45573936-T	0.973	6E-9		0.3760702	[0.24-0.51] mmHg increase	Affymetrix, Illumina [242865] (imputed)	N
922	chr6	44198361	44198362	rs45573936	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	6p21.1		rs45573936-T	0.973	4E-19		0.3589526	[0.28-0.44] mmHg increase	Affymetrix, Illumina [242866] (imputed)	N
922	chr6	44198361	44198362	rs45573936	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	6p21.1	SLC29A1	rs45573936-T	0.97227	3E-11		0.0371907	[0.026-0.048] unit increase	NR [13737936] (imputed)	N
922	chr6	44198361	44198362	rs45573936	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	6p21.1		rs45573936-?	NR	2E-11				NR [~ 8900000] (imputed)	N
922	chr6	44198361	44198362	rs45573936	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p21.1		rs45573936-?	NR	3E-9		0.0397511	[0.027-0.052] unit increase	Affymetrix [20259828] (imputed)	N
922	chr6	44202351	44202352	rs6458375	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	6p21.1	SLC29A1	rs6458375-T	0.226048	2E-12		0.01851026	[0.013-0.024] unit increase	Affymetrix [93095623] (imputed)	N
922	chr6	44202351	44202352	rs6458375	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	6p21.1		rs6458375-?	NR	7E-11				NR [~ 8900000] (imputed)	N
922	chr6	44202351	44202352	rs6458375	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-10 levels	7,681 Finnish ancestry individuals	NA	6p21.1	NR	rs6458375-C		2E-6		0.0946	[0.056-0.133] SD units decrease	NR [10700000] (imputed)	N
922	chr6	44203318	44203319	rs62401155	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	6p21.1		rs62401155-A	NR	9E-25		0.0269	[0.022-0.032] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
922	chr6	44203318	44203319	rs62401155	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	6p21.1		rs62401155-A	NR	9E-18		0.0224	[0.017-0.027] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
922	chr6	44203318	44203319	rs62401155	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p21.1	NR	rs62401155-G	0.721665	4E-12				Affymetrix, Illumina [22063850] (imputed)	N
922	chr6	44203318	44203319	rs62401155	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	6p21.1	NR	rs62401155-G	0.716698	7E-12		0.014567	[0.01-0.019] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
922	chr6	44203318	44203319	rs62401155	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p21.1	NR	rs62401155-A	0.278162	2E-39				Affymetrix, Illumina [24246363] (imputed)	N
922	chr6	44203318	44203319	rs62401155	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p21.1	NR	rs62401155-A	0.281485	6E-22				Affymetrix, Illumina [20825802] (imputed)	N
922	chr6	44203318	44203319	rs62401155	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	6p21.1		rs62401155-?	NR	2E-22				NR [~ 8900000] (imputed)	N
922	chr6	44203318	44203319	rs62401155	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	6p21.1	SLC29A1	rs62401155-A	0.2878	6E-11		0.02546482	[0.018-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
922	chr6	44204630	44204630	rs771449536	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	6p21.1	NR	rs771449536-D	0.232565	2E-24		0.024027	[0.019-0.029] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
922	chr6	44204735	44204736	rs6916554	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6p21.1	SLC29A1	rs6916554-A	0.230821	3E-31		0.031357303	[0.026-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
922	chr6	44204735	44204736	rs6916554	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	6p21.1	SLC29A1	rs6916554-A	0.230781	2E-24		0.025675934	[0.021-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
922	chr6	44206838	44206839	rs62403864	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	6p21.1		rs62403864-?	NR	2E-12				NR [~ 8900000] (imputed)	N
922	chr6	44211920	44211921	rs62403867	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	6p21.1	NR	rs62403867-G	0.23164	5E-42		0.029546	[0.025-0.034] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
922	chr6	44217373	44217374	rs34083426	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6p21.1	HSP90AB1	rs34083426-G	0.233105	2E-10		0.01669481	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
922	chr6	44217373	44217374	rs34083426	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	6p21.1	HSP90AB1	rs34083426-G	0.233066	4E-12		0.017919878	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
922	chr6	44217373	44217374	rs34083426	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	6p21.1	HSP90AB1	rs34083426-G	0.233054	9E-32		0.032021407	[0.027-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
922	chr6	44217373	44217374	rs34083426	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	6p21.1	HSP90AB1	rs34083426-G	0.233083	3E-24		0.0311284	[0.026-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
922	chr6	44228814	44228815	rs28362859	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Rheumatoid arthritis	8,255 European ancestry cases, 409,001 European ancestry controls, 5,348 East Asian ancestry cases, 173,268 East Asian ancestry controls	NA	6p21.1		rs28362859-C	NR	1E-12		0.1465	[0.11-0.19] unit increase	Affymetrix, Illumina [25835038] (imputed)	N
922	chr6	44228814	44228815	rs28362859	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Rheumatoid arthritis	5,348 East Asian ancestry cases, 173,268 East Asian ancestry controls	NA	6p21.1		rs28362859-C	0.218283566	4E-12		0.17211688	[0.12-0.22] unit increase	Illumina [13429970] (imputed)	N
922	chr6	44232073	44232074	rs730775	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	334,468 European ancestry, NR ancestry individuals	NA	6p21.1		rs730775-?	NR	5E-8				Affymetrix [NR] (imputed)	N
922	chr6	44232073	44232074	rs730775	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	6p21.1	NFKBIE	rs730775-G	0.423363	1E-18		0.019700052	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
922	chr6	44232073	44232074	rs730775	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	6p21.1	NFKBIE	rs730775-G	0.42333	2E-24		0.02276567	[0.018-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
922	chr6	44232073	44232074	rs730775	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	6p21.1	NFKBIE	rs730775-G	0.4242	2E-10		0.02303609	[0.016-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
922	chr6	44232073	44232074	rs730775	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	6p21.1	NFKBIE	rs730775-G	0.4242	6E-14		0.02712078	[0.02-0.034] unit decrease	Affymetrix [~ 2500000] (imputed)	N
922	chr6	44232919	44232920	rs2233434	23028356	Myouzen K	2012-09-13	PLoS Genet	Functional variants in NFKBIE and RTKN2 involved in activation of the NF-?B pathway are associated with rheumatoid arthritis in Japanese.	Rheumatoid arthritis	2,303 Japanese ancestry cases, 3,380 Japanese ancestry controls	5,604 Japanese ancestry cases, 31,982 Japanese ancestry controls	6p21.1	NFKBIE	rs2233434-G	0.215	1E-15		1.2	[1.15-1.26]	Illumina [NR]	N
922	chr6	44232919	44232920	rs2233434	22446963	Okada Y	2012-03-25	Nat Genet	Meta-analysis identifies nine new loci associated with rheumatoid arthritis in the Japanese population.	Rheumatoid arthritis	4,074 Japanese ancestry cases, 16,891 Japanese ancestry controls	5,277 Japanese ancestry cases, 21,684 Japanese ancestry controls	6p21.1	NFKBIE	rs2233434-G	0.21	6E-19		1.19	[1.15-1.24]	Affymetrix, Illumina [1948139]	N
922	chr6	44233920	44233921	rs2233424	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (immunosuppressants)	3,954 European ancestry cases, 268,648 European ancestry controls, 3,483 East Asian ancestry cases, 175,243 East Asian ancestry controls	NA	6p21.1		rs2233424-T	NR	2E-9		0.1578	[0.11-0.21] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
922	chr6	44233920	44233921	rs2233424	33310728	Ha E	2020-12-11	Ann Rheum Dis	Large-scale meta-analysis across East Asian and European populations updated genetic architecture and variant-driven biology of rheumatoid arthritis, identifying 11 novel susceptibility loci.	Rheumatoid arthritis	14,361 European ancestry cases, 43,923 European ancestry controls, 8,267 East Asian ancestry cases, 244,741 East Asian ancestry controls	NA	6p21.1		rs2233424-T	NR	7E-26		1.22	[1.17-1.26]	NR [13810676] (imputed)	N
922	chr6	44233920	44233921	rs2233424	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	6p21.1	NFKBIE	rs2233424-T	NR	2E-19		0.236603	[0.17-0.3] unit increase	Illumina [8380626] (imputed)	N
922	chr6	44233920	44233921	rs2233424	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	6p21.1	NFKBIE	rs2233424-T	0.21	9E-13	(East Asian)	0.21291	[0.15-0.27] unit increase	Illumina [8380626] (imputed)	N
922	chr6	44233920	44233921	rs2233424	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	6p21.1	NFKBIE	rs2233424-T	0.04	3E-8	(EA)	0.2849	[0.18-0.39] unit increase	Illumina [8380626] (imputed)	N
922	chr6	44233920	44233921	rs2233424	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	6p21.1	NFKBIE	rs2233424-T	0.21	2E-13	(East Asian)	1.24	[1.17-1.31]	Affymetrix, Illumina [up to 9739303] (imputed)	N
922	chr6	44233920	44233921	rs2233424	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	6p21.1	NFKBIE	rs2233424-T	0.12	1E-19		1.26	[1.20-1.32]	Affymetrix, Illumina [up to 9739303] (imputed)	N
922	chr6	44233920	44233921	rs2233424	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	6p21.1	NFKBIE	rs2233424-T	0.04	3E-8	(EA)	1.33	[1.20-1.47]	Affymetrix, Illumina [up to 9739303] (imputed)	N
922	chr6	44234620	44234621	rs28362855	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (immunosuppressants)	3,483 East Asian ancestry cases, 175,243 East Asian ancestry controls	NA	6p21.1		rs28362855-T	0.221172721	4E-9		0.1767642	[0.12-0.24] unit increase	Illumina [13134967] (imputed)	N
922	chr6	44245240	44245241	rs1044690	32723749	Kwon YC	2020-07-28	Ann Rheum Dis	Genome-wide association study in a Korean population identifies six novel susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis	4,068 Korean ancestry cases, 36,487 Korean ancestry controls	NA	6p21.1	NFKBIE	rs1044690-?		9E-10		1.2	[1.13-1.27]	Illumina [NR] (imputed)	N
922	chr6	44249163	44249164	rs80202727	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Rheumatoid arthritis	4,199 Japanese ancestry cases, 208,254 Japanese ancestry controls	NA	6p21.1		rs80202727-T	0.238626829	2E-12		1.2040778	[1.143111078-1.268296197]	Illumina [8919992] (imputed)	N
922	chr6	44294954	44294955	rs77663385	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Ovarian cancer (MTAG)	647 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.1	Intergenic	rs77663385-?		9E-6		1.14	[1.07-1.21]	Illumina [7645193] (imputed)	N
922	chr6	44294954	44294955	rs77663385	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Ovarian cancer	647 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.1	Intergenic	rs77663385-?		8E-6		3.17	[1.91-5.26]	Illumina [7645193] (imputed)	N
923	chr6	44308628	44308629	rs9369477	30514930	Mukherjee S	2018-12-04	Mol Psychiatry	Genetic data and cognitively defined late-onset Alzheimer's disease subgroups.	Alzheimer's disease with visuospatial domain impairment	Up to 497 European ancestry cases, 3,447 European ancestry controls	NA	6p21.1	NR	rs9369477-C	0.08	2E-7		2.0408163	[1.77-2.32]	NR [up to 6398204] (imputed)	N
923	chr6	44309045	44309050	rs201200147	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-10 levels	7,681 Finnish ancestry individuals	NA	6p21.1	NR	rs201200147-ATCTAT		3E-6		0.138	[0.08-0.196] SD units increase	NR [10700000] (imputed)	N
923	chr6	44311704	44311705	rs139363138	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-12p70 levels	8,270 Finnish ancestry individuals	NA	6p21.1	NR	rs139363138-T		7E-6		0.1657	[0.093-0.239] SD units decrease	NR [10700000] (imputed)	N
923	chr6	44315933	44315934	rs149197912	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.1	SPATS1	rs149197912-T	NR	9E-6	(men)	0.818141	[0.46-1.18] unit decrease	Illumina [13520550] (imputed)	N
923	chr6	44361367	44361368	rs757067196	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.1	CDC5L	rs757067196-A	0.9984	9E-6		1.0091	[0.56-1.45] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
923	chr6	44400041	44400042	rs144085478	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Vascular endothelial growth factor levels	7,118 Finnish ancestry individuals	NA	6p21.1	NR	rs144085478-C		4E-7		0.1929	[0.12-0.27] SD units increase	NR [10700000] (imputed)	N
923	chr6	44416076	44416077	rs11572061	26089329	Carty CL	2015-06-18	Stroke	Meta-Analysis of Genome-Wide Association Studies Identifies Genetic Risk Factors for Stroke in African Americans.	Ischemic stroke	up to 1,365 African American cases, up to 13,154 African American controls	European ancestry individuals (see Traylor, 2012)	6p21.1	CDC5L	rs11572061-A	0.97	1E-6	(AA)	0.59	[0.35-0.83] unit decrease	Affymetrix, Illumina [~ 2600000] (imputed)	N
923	chr6	44424799	44424800	rs543844	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	6p21.1	CDC5L	rs543844-A	NR	1E-7	(between families)	5.323	unit decrease	Affymetrix [up to 15107142] (imputed)	N
923	chr6	44424799	44424800	rs543844	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NA	6p21.1	intergenic	rs543844-G	0.34	3E-6		1.06	[1.03-1.08]	Affymetrix, Illumina [~ 2300000] (imputed)	N
924	chr6	44446673	44446674	rs2281690	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	6p21.1		rs2281690-G	0.41	5E-44		13.91	z score increase	Affymetrix [9061022] (imputed)	N
924	chr6	44446918	44446919	rs7770012	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	6p21.1	NR	rs7770012-C	0.4702	6E-13				NR [9056863] (imputed)	N
924	chr6	44446918	44446919	rs7770012	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	6p21.1		rs7770012-?	NR	8E-11				NR [9705931] (imputed)	N
924	chr6	44447003	44447004	rs7770034	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	6p21.1		rs7770034-A	0.41	2E-15		7.96	z score increase	Affymetrix [9061022] (imputed)	N
924	chr6	44447003	44447004	rs7770034	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	6p21.1	NR	rs7770034-A	0.4677	1E-17				NR [9056863] (imputed)	N
924	chr6	44447003	44447004	rs7770034	28855172	den Hollander W	2017-08-30	Ann Rheum Dis	Genome-wide association and functional studies identify a role for matrix Gla protein in osteoarthritis of the hand.	Osteoarthritis of the hand	8,743 individuals	2,836 European ancestry individuals, 1,175 individuals	6p21.1	CDC5L, SUPT3H	rs7770034-A	0.48	1E-6		0.5	[0.3-0.7] unit decrease	Illumina [~ 11000000] (imputed)	N
924	chr6	44447597	44447598	rs9357446	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Bell's palsy	1,894 European ancestry cases, 461,346 European ancestry controls, 343 East Asian ancestry cases, 178,191 East Asian ancestry controls	NA	6p21.1		rs9357446-A	NR	9E-9		0.1819	[0.12-0.24] unit increase	Affymetrix, Illumina [25842617] (imputed)	N
924	chr6	44447597	44447598	rs9357446	33602968	Skuladottir AT	2021-02-18	Sci Rep	A meta-analysis uncovers the first sequence variant conferring risk of Bell's palsy.	Bell's palsy	4,714 European ancestry cases, 1,011,520 European ancestry controls	NA	6p21.1	intergenic	rs9357446-A	0.531	7E-23		1.2306026	[1.18-1.28]	Affymetrix, Illumina [30341632] (imputed)	N
924	chr6	44447597	44447598	rs9357446	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	6p21.1	CDC5L	rs9357446-A	0.5169	1E-10		0.0151	[0.011-0.02] unit decrease	Affymetrix [19819130] (imputed)	N
924	chr6	44447597	44447598	rs9357446	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	6p21.1	CDC5L	rs9357446-A	0.5169	8E-9		0.0134	[0.0089-0.0179] unit decrease	Affymetrix [19819130] (imputed)	N
924	chr6	44447597	44447598	rs9357446	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	6p21.1		rs9357446-?	NR	2E-8				NR [~ 8900000] (imputed)	N
924	chr6	44449696	44449697	rs12154055	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Osteoarthritis	77,052 European ancestry cases, 378,169 European ancestry controls	NA	6p21.1	NR	rs12154055-G	0.61	3E-8		1.03	[1.02-1.04]	Affymetrix, Illumina [up to 17000000] (imputed)	N
924	chr6	44455132	44455133	rs116755262	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	6p21.1	NR	rs116755262-?	NR	8E-7				Affymetrix [5486770] (imputed)	N
924	chr6	44513484	44513485	rs144820908	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Vascular endothelial growth factor levels	7,118 Finnish ancestry individuals	NA	6p21.1	NR	rs144820908-C		1E-6		0.2053	[0.12-0.29] SD units increase	NR [10700000] (imputed)	N
924	chr6	44534381	44534382	rs79036082	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p21.1		rs79036082-?	NR	3E-11		0.0265978	[0.019-0.034] unit increase	Affymetrix [20259828] (imputed)	N
924	chr6	44538138	44538139	rs927485	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	6p21.1		rs927485-A	NR	4E-11		0.016	[0.011-0.021] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
924	chr6	44538138	44538139	rs927485	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	6p21.1	CDC5L, SUPT3H	rs927485-G	0.26	3E-9		5.91	z-score increase	Affymetrix [4311822] (imputed)	N
924	chr6	44538138	44538139	rs927485	25064007	Nakajima M	2014-07-27	Nat Genet	A genome-wide association study identifies susceptibility loci for ossification of the posterior longitudinal ligament of the spine.	Ossification of the posterior longitudinal ligament of the spine	1,112 Japanese ancestry cases, 6,810 Japanese ancestry controls	548 Japanese ancestry cases, 6,469 Japanese ancestry controls	6p21.1	CDC5L, SUPT3H, MIR4642	rs927485-C	0.137	9E-9		1.33	[1.21-1.46]	Illumina [5163786] (imputed)	N
924	chr6	44562106	44562107	rs491616	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.1		rs491616-G	0.914	2E-11				Affymetrix [10369434] (imputed)	N
924	chr6	44562106	44562107	rs491616	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	6p21.1		rs491616-G	0.914	7E-13				Affymetrix [10369434] (imputed)	N
924	chr6	44562106	44562107	rs491616	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p21.1		rs491616-?	NR	5E-10		0.024914	[0.018-0.032] unit increase	Affymetrix [20259828] (imputed)	N
924	chr6	44562692	44562693	rs575445	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p21.1		rs575445-?	NR	2E-12		0.0143973	[0.01-0.018] unit decrease	Affymetrix [20259828] (imputed)	N
925	chr6	44572228	44572229	rs9381340	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.1		rs9381340-G	0.374453	5E-15		0.017786147	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
925	chr6	44572457	44572458	rs562645309	32239398	Liu L	2020-04-01	Hum Genet	Two novel pleiotropic loci associated with osteoporosis and abdominal obesity.	Trunk fat mass adjusted for trunk lean mass	10,208 European ancestry individuals, 445 Hispanic individuals, 843 African ancestry individuals, 1,539 East Asian individuals	NA	6p21.1	CDC5L	rs562645309-T	NR	7E-6		1.13	NR unit increase	Affymetrix, Illumina [12061510] (imputed)	N
925	chr6	44572457	44572458	rs562645309	32239398	Liu L	2020-04-01	Hum Genet	Two novel pleiotropic loci associated with osteoporosis and abdominal obesity.	Femoral neck bone mineral density and trunk fat mass adjusted by trunk lean mass	10,208 European ancestry individuals, 445 Hispanic individuals, 843 African ancestry individuals, 1,539 East Asian individuals	NA	6p21.1	CDC5L	rs562645309-T	NR	5E-7				Affymetrix, Illumina [12061510] (imputed)	N
925	chr6	44573821	44573822	rs4711790	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p21.1	NR	rs4711790-T	0.37398	2E-16				Affymetrix, Illumina [23472807] (imputed)	N
925	chr6	44573821	44573822	rs4711790	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	6p21.1	NR	rs4711790-T	0.340237	5E-18		0.017265	[0.013-0.021] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
925	chr6	44591005	44591006	rs11963621	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	6p21.1		rs11963621-C	NR	6E-31		0.0443	[0.037-0.052] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
925	chr6	44591005	44591006	rs11963621	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.1		rs11963621-T	0.898	1E-15				Affymetrix [10369434] (imputed)	N
925	chr6	44591005	44591006	rs11963621	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	6p21.1		rs11963621-C	0.101643	2E-37		0.046902575	[0.04-0.054] unit decrease	Affymetrix [93095623] (imputed)	N
925	chr6	44591005	44591006	rs11963621	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p21.1	NR	rs11963621-C	0.0838082	1E-50				Affymetrix, Illumina [23467995] (imputed)	N
925	chr6	44591005	44591006	rs11963621	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	6p21.1	NR	rs11963621-C	0.100799	6E-54		0.048188	[0.042-0.054] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
925	chr6	44591720	44591721	rs79894332	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	6p21.1		rs79894332-G	0.898	4E-16				Affymetrix [10369434] (imputed)	N
925	chr6	44591720	44591721	rs79894332	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	6p21.1		rs79894332-A	0.101243	6E-33		0.044037748	[0.037-0.051] unit decrease	Affymetrix [93095623] (imputed)	N
925	chr6	44592705	44592706	rs9472313	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	6p21.1		rs9472313-A	NR	3E-9		0.0131	[0.0088-0.0174] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
925	chr6	44594158	44594159	rs556621	22941190	Holliday EG	2012-09-02	Nat Genet	Common variants at 6p21.1 are associated with large artery atherosclerotic stroke.	Stroke (ischemic)	421 European ancestry large artery atherosclerosis cases, 741 European ancestry ischemic stroke cases, 1,244 European ancestry controls	1,715 European ancestry large artery atherosclerosis cases, 9,552 European ancestry ischemic stroke cases, 52,695 European ancestry controls	6p21.1	CDC5L, SUPT3H	rs556621-A	0.30	5E-8	(LAA)	1.21	[1.13-1.30]	Illumina [551514]	N
925	chr6	44595158	44595159	rs658710	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	6p21.1		rs658710-?	NR	1E-12				NR [~ 8900000] (imputed)	N
925	chr6	44596120	44596121	rs75492293	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	6p21.1	intergenic	rs75492293-C	0.1003	2E-13		0.04381582	[0.032-0.055] unit decrease	Affymetrix [~ 2500000] (imputed)	N
925	chr6	44596120	44596121	rs75492293	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	6p21.1	intergenic	rs75492293-C	0.1003	1E-16		0.04932405	[0.038-0.061] unit decrease	Affymetrix [~ 2500000] (imputed)	N
925	chr6	44596120	44596121	rs75492293	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	6p21.1	intergenic	rs75492293-C	0.1003	8E-10		0.03659564	[0.025-0.048] unit increase	Affymetrix [~ 2500000] (imputed)	N
925	chr6	44596340	44596341	rs632728	24262325	Dichgans M	2013-11-21	Stroke	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Large artery stroke	2,167 cases, 49,159 controls	NA	6p21.1	SUPT3H	rs632728-T	NR	2E-7		1.19	[1.11-1.28]	Affymetrix, Illumina [~ 2400000] (imputed)	N
925	chr6	44612801	44612801	rs11442031	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p21.1		rs11442031-?	NR	2E-9		0.0126953	[0.0082-0.0171] unit decrease	Affymetrix [20259828] (imputed)	N
925	chr6	44631182	44631183	rs581465	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	6p21.1	NR	rs581465-C	0.406055	1E-10		0.0121	[0.0084-0.0158] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
925	chr6	44632968	44632969	rs1283935	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p21.1		rs1283935-?	NR	2E-28		0.0402605	[0.033-0.047] unit decrease	Affymetrix [20259828] (imputed)	N
925	chr6	44636918	44636919	rs7741085	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	6p21.1	NR	rs7741085-T	0.5905	1E-13	(European)	0.0465	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
925	chr6	44636918	44636919	rs7741085	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	6p21.1	NR	rs7741085-T	0.5874	2E-13		0.0423	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
925	chr6	44639099	44639100	rs11752730	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Intraocular pressure	101,939 European ancestry cases	NA	6p21.1	NR	rs11752730-C		2E-8		0.09	[0.051-0.129] unit increase	NR [NR]	N
925	chr6	44639099	44639100	rs11752730	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Intraocular pressure	133,492 European ancestry individuals	NA	6p21.1	SUPT3H	rs11752730-?	NR	5E-11		0.0851	[0.06-0.11] unit increase	Affymetrix, Illumina [up to 40000000] (imputed)	N
925	chr6	44639183	44639184	rs11755164	22504420	Estrada K	2012-04-15	Nat Genet	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Lumbar spine bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	6p21.1	SUPT3H	rs11755164-T	0.4	6E-11		0.04	[NR] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
925	chr6	44650212	44650213	rs9472325	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	6p21.1	NR	rs9472325-C	0.185001	4E-29		0.0458983	[0.038-0.054] unit decrease	NR [19129689] (imputed)	N
925	chr6	44654370	44654371	rs1298942	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	6p21.1	NR	rs1298942-A	NR	8E-15		0.0305	[0.023-0.038] unit increase	Affymetrix [9000000] (imputed)	N
925	chr6	44659585	44659586	rs4714811	28272467	Heilmann-Heimbach S	2017-03-08	Nat Commun	Meta-analysis identifies novel risk loci and yields systematic insights into the biology of male-pattern baldness.	Male-pattern baldness	10,846 European ancestry cases, 11,672 European ancestry controls	NA	6p21.1		rs4714811-T	0.19	3E-10		0.16	[0.1-0.22] unit decrease	Affymetrix, Illumina [8004650] (imputed)	N
925	chr6	44666914	44666915	rs227808	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		6p21.1	NR	rs227808-C	NR	3E-6		0.04	NR unit increase	NR [NR] (imputed)	N
925	chr6	44666914	44666915	rs227808	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Male-pattern baldness	9,009 European ancestry cases, 8,491 European ancestry controls	NA	6p21.1	CDC5L, SUPT3H	rs227808-?	NR	3E-9		1.1820331	[1.12-1.25]	Illumina [13436641] (imputed)	N
925	chr6	44676419	44676420	rs227819	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	6p21.1		rs227819-?	NR	9E-27				NR [~ 8900000] (imputed)	N
925	chr6	44677172	44677173	rs113166754	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p21.1		rs113166754-?	NR	1E-108		0.0913695	[0.083-0.1] unit increase	Affymetrix [20259828] (imputed)	N
925	chr6	44677172	44677173	rs113166754	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	6p21.1	SUPT3H	rs113166754-C	0.937322	5E-26	(women)	0.100259	[0.082-0.119] unit increase	NR [17166351] (imputed)	N
925	chr6	44677172	44677173	rs113166754	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	6p21.1	SUPT3H	rs113166754-C	0.937222	5E-47		0.0996059	[0.086-0.113] unit increase	NR [17166351] (imputed)	N
925	chr6	44677172	44677173	rs113166754	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	6p21.1	SUPT3H	rs113166754-C	0.937108	2E-21	(men)	0.0983851	[0.078-0.119] unit increase	NR [17166351] (imputed)	N
925	chr6	44681256	44681257	rs227832	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 23)	4,680 European ancestry individuals	3,566 European ancestry individuals	6p21.1		rs227832-C	0.25871285	4E-37				Illumina [7417619] (imputed)	N
925	chr6	44681839	44681840	rs227833	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p21.1	NR	rs227833-?		9E-10	(Corticospinal tract )			NR [8955960] (imputed)	N
925	chr6	44681839	44681840	rs227833	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p21.1	NR	rs227833-?		2E-8	(Corticospinal tract )			NR [8955960] (imputed)	N
925	chr6	44681839	44681840	rs227833	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Monobrow	69,284 European ancestry individuals	NA	6p21.1	CDC5L, SUPT3H	rs227833-?	NR	6E-16		0.033	[0.025-0.042] unit increase	Illumina [12039491] (imputed)	N
925	chr6	44687956	44687957	rs10948155	27701424	Castano-Betancourt MC	2016-10-04	PLoS Genet	Novel Genetic Variants for Cartilage Thickness and Hip Osteoarthritis.	Hip minimal joint space width	6,523 European ancestry individuals, 6,490 individuals	1,572 European ancestry individuals, 6,655 individuals	6p21.1	RUNX2, SUPT3H	rs10948155-T	0.67	2E-10		0.069	[0.047-0.091] unit increase	Illumina [2385183] (imputed)	N
925	chr6	44693719	44693720	rs35497646	33824429	Fjukstad KK	2021-04-06	Pharmacogenomics J	Genetic variants associated with cardiometabolic abnormalities during treatment with selective serotonin reuptake inhibitors: a genome-wide association study.	Triglyceride levels x SSRI defined daily dose interaction in schizophrenia or bipolar disorder	1,180 European ancestry individuals	NA	6p21.1	SUPT3H	rs35497646-A	NR	4E-9		1.21066	[0.81-1.61] unit increase	Illumina [NR] (imputed)	N
925	chr6	44695492	44695493	rs227847	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p21.1	NR	rs227847-?		6E-10	(Corticospinal tract )			NR [8955960] (imputed)	N
925	chr6	44695492	44695493	rs227847	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p21.1	NR	rs227847-?		9E-9	(Corticospinal tract )			NR [8955960] (imputed)	N
926	chr6	44710690	44710691	rs764396	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	6p21.1	SUPT3H	rs764396-C	0.462285	4E-51		0.0279256	[0.024-0.032] unit increase	NR [13737936] (imputed)	N
926	chr6	44720379	44720380	rs9717328	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	6p21.1	NR	rs9717328-G	0.483354	1E-11		0.045741	[0.032-0.059] unit decrease	Affymetrix [17914406] (imputed)	N
926	chr6	44720721	44720722	rs200182269	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.1	SUPT3H	rs200182269-G	NR	2E-8		0.0191647	[0.012-0.026] unit decrease	Affymetrix [321016] (imputed)	N
926	chr6	44722127	44722128	rs35265671	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	6p21.1	NR	rs35265671-G	NR	8E-10		0.0185	[0.013-0.024] unit increase	Affymetrix [9000000] (imputed)	N
926	chr6	44730394	44730395	rs1338907	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	6p21.1		rs1338907-?	NR	5E-60				NR [~ 8900000] (imputed)	N
926	chr6	44739948	44739949	rs1342371	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6p21.1	SUPT3H	rs1342371-A	0.088	2E-6	(IGF1 bound )	0.03	[NR] ng/mL increase	Illumina [899892]	N
926	chr6	44744183	44744183	rs112360218	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p21.1		rs112360218-?	NR	2E-36		0.0325713	[0.027-0.038] unit increase	Affymetrix [20259828] (imputed)	N
926	chr6	44751667	44751668	rs17336368	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Chin dimples	58,032 European ancestry cases, 13,457 European ancestry controls	NA	6p21.1	CDC5L, SUPT3H	rs17336368-?	NR	3E-8		1.0928961	[1.06-1.13]	Illumina [13537761] (imputed)	N
926	chr6	44763780	44763781	rs2145826	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Intraocular pressure	133,492 European ancestry individuals	NA	6p21.1	SUPT3H	rs2145826-G	0.43	7E-8				Affymetrix, Illumina [8002429] (imputed)	N
926	chr6	44763780	44763781	rs2145826	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Glaucoma	7,947 British ancestry cases, 119,318 British ancestry controls	NA	6p21.1	SUPT3H	rs2145826-G	0.43	4E-6		1.08	NR	Affymetrix [at least 8002429] (imputed)	N
926	chr6	44765534	44765535	rs720989	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	6p21.1	SUPT3H	rs720989-T	0.7879	7E-12		0.0021	[0.0013-0.0029] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
926	chr6	44769236	44769237	rs7770848	23829686	Ding L	2013-07-05	Hum Genomics	Rank-based genome-wide analysis reveals the association of ryanodine receptor-2 gene variants with childhood asthma among human populations.	Asthma (childhood onset)	429 European ancestry affected offspring trios	52 African American affected offspring trios, 46 Hispanic affected offspring trios	6p21.1	intergenic	rs7770848-?	NR	2E-7				Affymetrix [786195]	N
926	chr6	44777690	44777691	rs10948172	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Osteoarthritis of the hip or knee	39,427 European ancestry cases, 378,169 European ancestry controls	NA	6p21.1	SUPT3H	rs10948172-G	0.29	3E-7		1.0435205	[1.02668175-1.060635228]	Affymetrix, Illumina [up to 17000000] (imputed)	N
926	chr6	44777690	44777691	rs10948172	30374069	Styrkarsdottir U	2018-10-29	Nat Genet	Meta-analysis of Icelandic and UK data sets identifies missense variants in SMO, IL11, COL11A1 and 13 more new loci associated with osteoarthritis.	Osteoarthritis (hip)	17,151 European ancestry cases, 596,639 European ancestry controls	NA	6p21.1	NR	rs10948172-G	0.29	9E-11		1.08806	[NR]	Affymetrix, Illumina [11554240] (imputed)	N
926	chr6	44777690	44777691	rs10948172	22763110	Zeggini E	2012-07-03	Lancet	Identification of new susceptibility loci for osteoarthritis (arcOGEN): a genome-wide association study.	Osteoarthritis	7,410 European ancestry cases, 11,009 European ancestry controls	7,473 European ancestry cases, 42,938 European ancestry controls	6p21.1	CDC5L, SUPT3H	rs10948172-G	0.29	6E-7		1.08	[1.05-1.12]	Illumina [485491]	N
926	chr6	44781313	44781313	rs5875893	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p21.1	NR	rs5875893-?		4E-16	(Corticospinal tract )			NR [8955960] (imputed)	N
926	chr6	44781313	44781313	rs5875893	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p21.1	NR	rs5875893-?		2E-14	(Corticospinal tract )			NR [8955960] (imputed)	N
926	chr6	44781313	44781313	rs5875893	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	6p21.1	NR	rs5875893-?		2E-8	(Corticospinal tract )			NR [8955960] (imputed)	N
926	chr6	44781313	44781313	rs5875893	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p21.1		rs5875893-?	NR	3E-60		0.033913	[0.03-0.038] unit decrease	Affymetrix [20259828] (imputed)	N
926	chr6	44792717	44792718	rs9395049	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.1	SUPT3H	rs9395049-G	0.477682	2E-10		0.014047174	[0.0097-0.0184] unit decrease	Affymetrix [93095623] (imputed)	N
926	chr6	44792717	44792718	rs9395049	29921221	Cha S	2018-06-19	BMC Genomics	Identification of five novel genetic loci related to facial morphology by genome-wide association studies.	Nose morphology	5,643 Korean ancestry individuals	up to 1,940 Korean ancestry individuals	6p21.1	CDC5L, SUPT3H	rs9395049-T	0.35	1E-6	(Nasal bridge angle)	0.401	[NR] unit increase	Affymetrix [311944]	N
926	chr6	44795789	44795790	rs755	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	6p21.1	NR	rs755-T	0.297444	2E-11		0.0234566	[0.017-0.03] unit increase	NR [19129689] (imputed)	N
926	chr6	44796595	44796596	rs524492	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.1	SUPT3H	rs524492-T	NR	5E-14		0.0238512	[0.018-0.03] unit decrease	Affymetrix [321016] (imputed)	N
926	chr6	44799076	44799076	rs113477276	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p21.1	NR	rs113477276-?		2E-11	(Corticospinal tract )			NR [8955960] (imputed)	N
926	chr6	44799081	44799081	rs397730682	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.1	SUPT3H	rs397730682-A	0.8199	4E-6		0.0383	[0.022-0.055] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
926	chr6	44800014	44800015	rs542444	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	6p21.1		rs542444-?	NR	1E-9				NR [9705931] (imputed)	N
926	chr6	44800014	44800015	rs542444	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	6p21.1		rs542444-?	NR	6E-11				NR [~ 8900000] (imputed)	N
926	chr6	44805213	44805214	rs857601	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	6p21.1	NA	rs857601-T	0.7139	4E-9		0.011	[0.0073-0.0147] unit increase	NR [~ 27400000] (imputed)	N
926	chr6	44808434	44808435	rs860741	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	6p21.1		rs860741-?	NR	5E-10				NR [~ 8900000] (imputed)	N
926	chr6	44810350	44810351	rs3799969	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	6p21.1	SUPT3H	rs3799969-?	NR	2E-13		0.023313329	[0.017-0.03] unit decrease	Illumina [27896057] (imputed)	N
927	chr6	44828199	44828200	rs34243039	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p21.1	NR	rs34243039-?		2E-14	(Corticospinal tract )			NR [8955960] (imputed)	N
927	chr6	44837355	44837356	rs3799977	18839057	Lesch KP	2008-10-07	J Neural Transm (Vienna)	Molecular genetics of adult ADHD: converging evidence from genome-wide association and extended pedigree linkage studies.	Attention deficit hyperactivity disorder	343 European ancestry cases, 250 European ancestry controls, 54 controls	NA	6p21.1	SUPT3H	rs3799977-?	NR	5E-6				Affymetrix [504219]	N
927	chr6	44855667	44855668	rs553012877	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p21.1		rs553012877-?	NR	6E-17		0.215506	[0.17-0.27] unit increase	Affymetrix [20259828] (imputed)	N
927	chr6	44861899	44861900	rs9765884	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p21.1	NR	rs9765884-?		3E-13	(Corticospinal tract )			NR [8955960] (imputed)	N
927	chr6	44867833	44867834	rs3957281	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	6p21.1	NR	rs3957281-A	0.504085	2E-12		0.0463308	[0.033-0.06] unit decrease	Affymetrix [17914406] (imputed)	N
927	chr6	44875761	44875762	rs538801	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	6p21.1	NR	rs538801-T	0.4302	5E-8		0.0211	[0.013-0.029] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
927	chr6	44877312	44877313	rs7763421	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p21.1	NR	rs7763421-?		2E-11	(Corticospinal tract )			NR [8955960] (imputed)	N
927	chr6	44928210	44928211	rs34980849	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p21.1	NR	rs34980849-?		2E-8	(Corticospinal tract )			NR [8955960] (imputed)	N
927	chr6	44928952	44928953	rs16872971	25742292	Aschebrook-Kilfoy B	2015-03-05	PLoS One	Genome-wide association study of parity in Bangladeshi women.	Number of pregnancies	1,686 Bangladeshi women	NA	6p21.1	NR	rs16872971-?		5E-6		1.87	unit increase	Illumina [1211988] (imputed)	N
927	chr6	44928952	44928953	rs16872971	25742292	Aschebrook-Kilfoy B	2015-03-05	PLoS One	Genome-wide association study of parity in Bangladeshi women.	Number of children	1,686 Bangladeshi women	NA	6p21.1	NR	rs16872971-?		9E-6		1.9	unit increase	Illumina [1211988] (imputed)	N
927	chr6	44943981	44943982	rs17423748	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	6p21.1	NR	rs17423748-T	0.7242	4E-12	(European)	0.0477	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
927	chr6	44946505	44946506	rs9472414	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mode of anisotropy)	17,706 European ancestry individuals	NA	6p21.1	NR	rs9472414-?		4E-8	(Retrolenticular part of internal capsule)			NR [8955960] (imputed)	N
927	chr6	44946505	44946506	rs9472414	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	6p21.1	RUNX2, SUPT3H	rs9472414-A	0.29	2E-6		0.021	[0.0073-0.0347] unit decrease	Affymetrix, Illumina [2704730] (imputed)	N
927	chr6	44946505	44946506	rs9472414	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	6p21.1	SUPT3H/RUNX2	rs9472414-A	0.22	2E-9		0.026	[NR] unit decrease	Affymetrix, Illumina [2834208] (imputed)	N
927	chr6	44947320	44947321	rs10948192	33547071	Bonfante B	2021-02-05	Sci Adv	A GWAS in Latin Americans identifies novel face shape loci, implicating VPS13B and a Denisovan introgressed region in facial variation.	Facial morphology (upper face flatness)	6,169 Latin American individuals	NA	6p21.1		rs10948192-?	NR	3E-7				Illumina [8703729] (imputed)	N
927	chr6	44947320	44947321	rs10948192	33547071	Bonfante B	2021-02-05	Sci Adv	A GWAS in Latin Americans identifies novel face shape loci, implicating VPS13B and a Denisovan introgressed region in facial variation.	Facial morphology (forehead protrusion 1)	6,169 Latin American individuals	NA	6p21.1		rs10948192-?	NR	2E-11				Illumina [8703729] (imputed)	N
927	chr6	44949919	44949923	rs66595702	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p21.1	NR	rs66595702-?		2E-11	(Corticospinal tract )			NR [8955960] (imputed)	N
928	chr6	44967489	44967490	rs10948197	19893584	Kim JJ	2009-11-06	J Hum Genet	Identification of 15 loci influencing height in a Korean population.	Height	8,842 Korean ancestry individuals	NA	6p21.1	SUPT3H	rs10948197-C	0.34	8E-6		0.51	[NR] cm decrease	Affymetrix [334546]	N
928	chr6	45016523	45016524	rs188657011	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	6p21.1	SUPT3H	rs188657011-A	0.999	2E-6	(AA)	0.367	unit increase	Illumina [NR] (imputed)	N
928	chr6	45018187	45018188	rs35488722	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	6p21.1		rs35488722-G	0.71113	2E-12		0.015723	[0.011-0.02] unit increase	Illumina [13479295] (imputed)	N
928	chr6	45025813	45025814	rs9349309	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	6p21.1		rs9349309-?	NR	2E-10				NR [~ 8900000] (imputed)	N
928	chr6	45025911	45025912	rs9367214	27021288	Brevik EJ	2016-03-29	Am J Med Genet B Neuropsychiatr Genet	Genome-wide analyses of aggressiveness in attention-deficit hyperactivity disorder.	Oppositional defiant disorder dimensions in attention-deficit hyperactivity disorder	750 European ancestry child cases	NA	6p21.1	SUPT3H	rs9367214-G	NR	8E-6	(Defiant/Vindictive dimension)	0.9467	[0.54-1.36] unit decrease	Illumina [1871025] (imputed)	N
928	chr6	45031387	45031388	rs372964153	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	6p21.1	NR	rs372964153-T	0.399114	2E-13		0.0522184	[0.038-0.066] unit decrease	Affymetrix [17914406] (imputed)	N
928	chr6	45053058	45053059	rs66604011	33593615	Huang Y	2020-11-09	J Genet Genomics	A genome-wide association study of facial morphology identifies novel genetic loci in Han Chinese.	Nose morphology	2,659 Han Chinese ancestry individuals	NA	6p21.1	NR	rs66604011-?		1E-8				Illumina [4757938] (imputed)	N
928	chr6	45060470	45060471	rs183066049	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p21.1		rs183066049-?	NR	4E-29		0.155828	[0.13-0.18] unit increase	Affymetrix [20259828] (imputed)	N
928	chr6	45078770	45078771	rs5875909	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p21.1	NR	rs5875909-?		4E-8	(Corticospinal tract )			NR [8955960] (imputed)	N
928	chr6	45080143	45080144	rs1324538	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	6p21.1	SUPT3H	rs1324538-A	0.3836	2E-34		0.0237	[0.02-0.027] unit increase	Affymetrix [18391927] (imputed)	N
928	chr6	45080841	45080842	rs11349771	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p21.1	NR	rs11349771-?		9E-10	(Corticospinal tract )			NR [8955960] (imputed)	N
929	chr6	45095162	45095163	rs9395066	18391951	Gudbjartsson DF	2008-04-06	Nat Genet	Many sequence variants affecting diversity of adult human height.	Height	30,968 European ancestry individuals	8,541 European ancestry individuals	6p21.1	SUPT3H, RUNX2	rs9395066-C	0.48	8E-6		3.5	[1.93-5.07] % s.d. increase	Affymetrix, Illumina [up to 304226]	N
929	chr6	45097502	45097503	rs6938592	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	6p21.1		rs6938592-T	NR	5E-38		0.0186	[0.016-0.021] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
929	chr6	45097502	45097503	rs6938592	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.1	SUPT3H	rs6938592-A	NR	2E-8		0.018214	[0.012-0.025] unit decrease	Affymetrix [321114] (imputed)	N
929	chr6	45097502	45097503	rs6938592	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6p21.1	NR	rs6938592-?	NR	1E-11				Affymetrix [~ 8270000] (imputed)	N
929	chr6	45097502	45097503	rs6938592	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p21.1	NR	rs6938592-?		2E-8	(Corticospinal tract )			NR [8955960] (imputed)	N
929	chr6	45097502	45097503	rs6938592	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6p21.1		rs6938592-?	NR	3E-47				NR [~ 8900000] (imputed)	N
929	chr6	45100329	45100330	rs56283067	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	6p21.1	NR	rs56283067-T	0.709	3E-12	(European)	0.0477	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
929	chr6	45106437	45106438	rs75230517	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	6p21.1	SUPT3H	rs75230517-G	0.949968	1E-102		0.0910186	[0.083-0.099] unit increase	NR [13737936] (imputed)	N
929	chr6	45106437	45106438	rs75230517	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	6p21.1		rs75230517-?	NR	4E-126				NR [~ 8900000] (imputed)	N
929	chr6	45106437	45106438	rs75230517	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p21.1		rs75230517-?	NR	3E-125		0.107672	[0.098-0.117] unit increase	Affymetrix [20259828] (imputed)	N
929	chr6	45144223	45144224	rs184065563	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density (age over 60)	22,504 European ancestry and African American individuals	NA	6p21.1	NR	rs184065563-A	0.3052	7E-9		0.0623	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
929	chr6	45144223	45144224	rs184065563	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	6p21.1	NR	rs184065563-A	0.3023	5E-11		0.0412	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
929	chr6	45145324	45145325	rs376649957	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Intraocular pressure	101,939 European ancestry cases	NA	6p21.1	NR	rs376649957-G		2E-9		0.21	[0.15-0.27] unit increase	NR [NR]	N
929	chr6	45145401	45145402	rs12193102	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Osteoarthritis of the hip or knee	39,427 European ancestry cases, 378,169 European ancestry controls	NA	6p21.1	NR	rs12193102-G	0.39	2E-8		1.05	[1.03-1.06]	Affymetrix, Illumina [up to 17000000] (imputed)	N
929	chr6	45153182	45153183	rs191485704	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	6p21.1	NR	rs191485704-T	NR	3E-24		0.0587	[0.047-0.07] unit increase	Affymetrix [9000000] (imputed)	N
929	chr6	45157785	45157786	rs181741409	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	6p21.1	SUPT3H	rs181741409-A	0.999	3E-6	(AA)	0.462	unit increase	Illumina [NR] (imputed)	N
929	chr6	45173551	45173552	rs6941169	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	6p21.1	NR	rs6941169-C	0.407338	2E-11		0.0454649	[0.032-0.059] unit increase	Affymetrix [17914406] (imputed)	N
929	chr6	45181339	45181340	rs9463078	27021288	Brevik EJ	2016-03-29	Am J Med Genet B Neuropsychiatr Genet	Genome-wide analyses of aggressiveness in attention-deficit hyperactivity disorder.	Oppositional defiant disorder dimensions in attention-deficit hyperactivity disorder	750 European ancestry child cases	NA	6p21.1	SUPT3H	rs9463078-A	NR	3E-6	(Defiant/Vindictive dimension)	0.9733	[0.57-1.38] unit increase	Illumina [1871025] (imputed)	N
929	chr6	45181693	45181694	rs10456544	25934476	de Vries PS	2015-05-01	Blood	Genetic variants in the ADAMTS13 and SUPT3H genes are associated with ADAMTS13 activity.	ADAMTS13 activity	3,423 European ancestry individuals	2,025 European ancestry individuals	6p21.1	SUPT3H	rs10456544-A	0.0711	1E-8		4.2	unit increase	Illumina [8237900] (imputed)	N
929	chr6	45183950	45183951	rs796831889	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p21.1		rs796831889-?	NR	5E-21		0.085711	[0.066-0.105] unit increase	Affymetrix [20259828] (imputed)	N
930	chr6	45230420	45230421	rs4714845	33593615	Huang Y	2020-11-09	J Genet Genomics	A genome-wide association study of facial morphology identifies novel genetic loci in Han Chinese.	Nose morphology	2,659 Han Chinese ancestry individuals	NA	6p21.1	NR	rs4714845-?		6E-9				Illumina [4757938] (imputed)	N
930	chr6	45244414	45244415	rs10948222	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	6p21.1	SUPT3H	rs10948222-T	0.418	1E-20		0.031	[0.025-0.037] unit decrease	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
930	chr6	45244414	45244415	rs10948222	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	6p21.1	SUPT3H	rs10948222-C	0.6	5E-11		1.15	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
930	chr6	45277714	45277715	rs574055998	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p21.1		rs574055998-?	NR	3E-10		0.122499	[0.085-0.16] unit increase	Affymetrix [20259828] (imputed)	N
930	chr6	45284922	45284923	rs62400317	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	6p21.1	NR	rs62400317-T	0.2865	1E-10		0.0402	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
930	chr6	45296338	45296339	rs145364349	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6p21.1		rs145364349-?	NR	6E-17				NR [~ 8900000] (imputed)	N
930	chr6	45298203	45298204	rs12201899	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	6p21.1	NR	rs12201899-A	0.2961	2E-12	(European)	0.0474	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
930	chr6	45307442	45307443	rs12199720	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Intraocular pressure	101,939 European ancestry cases	NA	6p21.1	NR	rs12199720-C		4E-8		0.08	[0.041-0.119] unit increase	NR [NR]	N
930	chr6	45316246	45316247	rs9463085	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	6p21.1	NR	rs9463085-A	0.593033	5E-11		0.0444157	[0.031-0.058] unit decrease	Affymetrix [17914406] (imputed)	N
930	chr6	45329655	45329656	rs1852985	27193062	Adhikari K	2016-05-19	Nat Commun	A genome-wide association scan implicates DCHS2, RUNX2, GLI3, PAX1 and EDAR in human facial variation.	middle facial morphology traits (quantitative measurement)	2955 Latin American ancestry individuals.	NA	6p21.1	SUPT3H/RUNX1	rs1852985-T	NR	2E-8	(Nose bridge breadth)	4.4E-4	NR increase	Illumina [9117642] (imputed)	N
930	chr6	45329655	45329656	rs1852985	27193062	Adhikari K	2016-05-19	Nat Commun	A genome-wide association scan implicates DCHS2, RUNX2, GLI3, PAX1 and EDAR in human facial variation.	facial morphology traits (multivariate analysis)	5,958 Latin American ancestry individuals.	NA	6p21.1	SUPT3H, RUNX2	rs1852985-?		9E-10				Illumina [9117642] (imputed)	N
930	chr6	45342050	45342051	rs12208924	33593615	Huang Y	2020-11-09	J Genet Genomics	A genome-wide association study of facial morphology identifies novel genetic loci in Han Chinese.	Nose morphology	2,659 Han Chinese ancestry individuals	NA	6p21.1	NR	rs12208924-?		4E-8				Illumina [4757938] (imputed)	N
931	chr6	45357698	45357699	rs2396502	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Osteoarthritis (hip)	15,704 European ancestry cases, 378,169 European ancestry controls	NA	6p21.1	NR	rs2396502-C	0.6	2E-12		1.09	[1.06-1.11]	Affymetrix, Illumina [up to 17000000] (imputed)	N
931	chr6	45374182	45374183	rs1997995	30374069	Styrkarsdottir U	2018-10-29	Nat Genet	Meta-analysis of Icelandic and UK data sets identifies missense variants in SMO, IL11, COL11A1 and 13 more new loci associated with osteoarthritis.	Osteoarthritis (hip)	17,151 European ancestry cases, 596,639 European ancestry controls	NA	6p21.1	RUNX2	rs1997995-G	NR	1E-11	(additive)	1.09	[1.06-1.12]	Affymetrix, Illumina [11554240] (imputed)	N
931	chr6	45376220	45376221	rs12206662	27701424	Castano-Betancourt MC	2016-10-04	PLoS Genet	Novel Genetic Variants for Cartilage Thickness and Hip Osteoarthritis.	Hip minimal joint space width	6,523 European ancestry individuals, 6,490 individuals	1,572 European ancestry individuals, 6,655 individuals	6p21.1	SUPT3H, RUNX2	rs12206662-A	0.07	1E-9		0.14	[0.093-0.187] unit decrease	Illumina [2385183] (imputed)	N
931	chr6	45384017	45384018	rs17288390	34450027	Boer CG	2021-08-24	Cell	Deciphering osteoarthritis genetics across 826,690 individuals from 9 populations.	Osteoarthritis (with total hip replacement)	23,021 European ancestry cases, 296,016 European ancestry controls	NA	6p21.1		rs17288390-T	0.6476	9E-13		0.9219171	[0.901546561-0.942747862]	Affymetrix, Illumina [NR] (imputed)	N
931	chr6	45395788	45395789	rs2819860	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p21.1	NR	rs2819860-?		3E-8	(Corticospinal tract )			NR [8955960] (imputed)	N
931	chr6	45397049	45397050	rs2677102	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p21.1	NR	rs2677102-?		6E-10	(Corticospinal tract )			NR [8955960] (imputed)	N
931	chr6	45397049	45397050	rs2677102	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p21.1	NR	rs2677102-?		1E-8	(Corticospinal tract )			NR [8955960] (imputed)	N
931	chr6	45403773	45403774	rs2677108	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6p21.1		rs2677108-?	NR	3E-11				NR [~ 8900000] (imputed)	N
931	chr6	45408439	45408440	rs6458443	30320955	Baird DA	2018-10-15	J Bone Miner Res	Identification of novel loci associated with hip shape: a meta-analysis of genome-wide association studies.	Hip shape (DXA scan)	10,217 European ancestry individuals, 5,717 individuals	NA	6p21.1	RUNX2	rs6458443-T	0.36	7E-9	(hip shape mode 1)	0.069	[0.045-0.093] unit decrease	Illumina [7191926] (imputed)	N
931	chr6	45410311	45410312	rs910586	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical thickness (min-P)	26,502 European ancestry individuals	NA	6p21.1	STIL, CMPK1, FOXE3, FOXD2	rs910586-?		7E-9				NR [7428630] (imputed)	N
931	chr6	45410311	45410312	rs910586	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (min-P)	26,502 European ancestry individuals	NA	6p21.1	KCNK3, SLC35F6, CENPA, DPYSL5, MAPRE3, TMEM214, AGBL5, OST4, EMILIN1, KHK, CGREF1, ABHD1, PREB, C2orf53, TCF23	rs910586-?		2E-8				NR [7428630] (imputed)	N
931	chr6	45422198	45422199	rs147081589	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	6p21.1	RUNX2	rs147081589-G	0.011145	2E-9		0.067076914	[0.045-0.089] unit decrease	Affymetrix [93095623] (imputed)	N
931	chr6	45422198	45422199	rs147081589	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	6p21.1		rs147081589-?	NR	4E-9				NR [~ 8900000] (imputed)	N
931	chr6	45424939	45424940	rs2819861	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical thickness (MOSTest)	26,502 European ancestry individuals	NA	6p21.1	C1orf106, KIF21B, CACNA1S	rs2819861-?		2E-9				NR [7428630] (imputed)	N
931	chr6	45424939	45424940	rs2819861	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	6p21.1	NR	rs2819861-?	NR	3E-11	(left putamen)			NR [9227495] (imputed)	N
931	chr6	45424939	45424940	rs2819861	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	6p21.1	NR	rs2819861-?	NR	2E-8	(left pallidum)			NR [9227495] (imputed)	N
931	chr6	45424939	45424940	rs2819861	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	6p21.1	NR	rs2819861-?	NR	1E-8	(right putamen)			NR [9227495] (imputed)	N
931	chr6	45428508	45428508	rs35405209	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	6p21.1	NR	rs35405209-?	NR	3E-9	(right pallidum)			NR [9227495] (imputed)	N
931	chr6	45432213	45432214	rs2790102	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	6p21.1	CALCRL, TFPI	rs2790102-?		4E-12				NR [7428630] (imputed)	N
931	chr6	45432264	45432265	rs2790103	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	6p21.1	RUNX2	rs2790103-?		5E-16				NR [7428630] (imputed)	N
931	chr6	45443175	45443176	rs2819865	32339537	Roberts V	2020-04-24	J Invest Dermatol	Genome wide association study identifies genetic associations with perceived age.	Youthful appearance (self-reported)	423,992 European ancestry individuals	NA	6p21.1	RUNX2	rs2819865-A	0.319162	2E-9		1.0281886	NR	Affymetrix [~ 9600000] (imputed)	N
931	chr6	45444060	45444061	rs2677110	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	6p21.1		rs2677110-T	0.33	1E-16		8.27	z score increase	Affymetrix [9061022] (imputed)	N
931	chr6	45444060	45444061	rs2677110	34098431	Ning K	2021-04-20	Neurobiol Aging	Improving brain age estimates with deep learning leads to identification of novel genetic factors associated with brain aging.	Relative brain age	16,998 European ancestry individuals	NA	6p21.1	RUNX2	rs2677110-?	NR	1E-10				NR [538476]	N
931	chr6	45447933	45447934	rs4714854	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	6p21.1	NR	rs4714854-T	0.3484	4E-15				NR [9056863] (imputed)	N
931	chr6	45456980	45456981	rs2396442	28394258	Wild PS	2017-04-10	J Clin Invest	Large-scale genome-wide analysis identifies genetic variants associated with cardiac structure and function.	Left ventricle wall thickness	30,201 European ancestry individuals	NA	6p21.1	NR	rs2396442-T	0.6589	2E-6		0.0096	[0.0057-0.0135] unit decrease	Affymetrix, Illumina [at least 283291] (imputed)	N
931	chr6	45459362	45459363	rs111606434	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.1	NR	rs111606434-G	0.01045	6E-10	(ASAH1)	0.04747	NR unit increase	Illumina [1671387] (imputed)	N
931	chr6	45459362	45459363	rs111606434	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.1	NR	rs111606434-G	0.01045	3E-8	(LDHB)	0.1955	NR unit increase	Illumina [1671387] (imputed)	N
931	chr6	45459362	45459363	rs111606434	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.1	NR	rs111606434-G	0.01045	1E-10	(IGKC)	3.653	NR unit increase	Illumina [1671387] (imputed)	N
931	chr6	45461469	45461469	rs761638878	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	6p21.1	RUNX2	rs761638878-CTG	0.32297	2E-9		0.014746331	[0.01-0.0195] unit decrease	Affymetrix [93095623] (imputed)	N
931	chr6	45469625	45469626	rs1316330	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	6p21.1	NR	rs1316330-?	NR	5E-8	(right pallidum)			NR [9227495] (imputed)	N
932	chr6	45499613	45499613	rs35740963	30089514	Chen JA	2018-08-08	Mol Neurodegener	Joint genome-wide association study of progressive supranuclear palsy identifies novel susceptibility loci and genetic correlation to neurodegenerative diseases.	Progressive supranuclear palsy	1,646 European ancestry cases, 10,662 European ancestry controls	NA	6p21.1	RUNX2	rs35740963-?		2E-8				Illumina [6419662] (imputed)	N
932	chr6	45506121	45506122	rs12209785	28470677	Tang H	2017-05-03	Int J Cancer	Genetic polymorphisms associated with pancreatic cancer survival: a genome-wide association study.	Survival in pancreatic cancer	868 European ancestry cases	820 European ancestry cases	6p21.1	RUNX2	rs12209785-G	NR	4E-6		1.37	[1.20-1.56]	NR [7738399] (imputed)	N
932	chr6	45522138	45522139	rs13191376	32528159	Choquet H	2020-06-11	Commun Biol	A multiethnic genome-wide analysis of 44,039 individuals identifies 41 new loci associated with central corneal thickness.	Central corneal thickness	32,292 European ancestry individuals, 9,623 East Asian ancestry individuals, 1,367 Hispanic/Latino individuals, 757 African American  individuals	NA	6p21.1	RUNX2	rs13191376-?	NA	1E-16		2.23	[1.7-2.76] unit increase	Affymetrix [5541230] (imputed)	N
932	chr6	45522138	45522139	rs13191376	29760442	Iglesias AI	2018-05-14	Nat Commun	Cross-ancestry genome-wide association analysis of corneal thickness strengthens link between complex and Mendelian eye diseases.	Central corneal thickness	17,803 European ancestry individuals, 8,107 Asian ancestry individuals	NA	6p21.1	RUNX2	rs13191376-T	0.32	2E-8		2.06	[1.35-2.77] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
932	chr6	45522659	45522660	rs1755056	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Intraocular pressure	101,939 European ancestry cases	NA	6p21.1	NR	rs1755056-C		1E-9		0.09	[0.051-0.129] unit increase	NR [NR]	N
932	chr6	45522659	45522660	rs1755056	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Intraocular pressure	133,492 European ancestry individuals	NA	6p21.1	RUNX2	rs1755056-?	NR	3E-10		0.0859	[0.059-0.113] unit decrease	Affymetrix, Illumina [up to 40000000] (imputed)	N
932	chr6	45522659	45522660	rs1755056	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	6p21.1	RUNX2	rs1755056-C	0.652	2E-11		0.092	[0.065-0.119] unit increase	Affymetrix, Illumina [NR] (imputed)	N
932	chr6	45530470	45530471	rs12202314	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	6p21.1	RUNX2	rs12202314-T	0.6753	2E-16		0.0209	[0.016-0.026] unit decrease	Affymetrix [19819130] (imputed)	N
932	chr6	45534164	45534165	rs1928529	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	6p21.1		rs1928529-?	NR	5E-9				NR [~ 8900000] (imputed)	N
932	chr6	45545703	45545704	rs77418927	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	6p21.1		rs77418927-?	NR	4E-20				NR [~ 8900000] (imputed)	N
932	chr6	45545850	45545851	rs7740614	32339537	Roberts V	2020-04-24	J Invest Dermatol	Genome wide association study identifies genetic associations with perceived age.	Youthful appearance (self-reported)	423,992 European ancestry individuals	NA	6p21.1	RUNX2	rs7740614-G	0.513449	5E-9		1.0258449	NR	Affymetrix [~ 9600000] (imputed)	N
932	chr6	45552730	45552731	rs11751172	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	6p21.1	RUNX2, CLIC5	rs11751172-T	0.244	2E-11		0.040427	[0.029-0.052] unit decrease	Illumina [13520550] (imputed)	N
932	chr6	45552730	45552731	rs11751172	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	6p21.1	RUNX2, CLIC5	rs11751172-T	0.244	9E-11		0.0275801	[0.019-0.036] unit increase	Illumina [13520550] (imputed)	N
932	chr6	45557499	45557500	rs6458448	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	6p21.1		rs6458448-G	NR	2E-9		0.011	[0.0075-0.0145] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
932	chr6	45562226	45562226	rs550210291	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	6p21.1	RUNX2	rs550210291-CAA	0.087284	7E-10		0.025323283	[0.017-0.033] unit increase	Affymetrix [93095623] (imputed)	N
932	chr6	45562463	45562464	rs77182156	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	6p21.1	NR	rs77182156-T	0.073935	1E-13		0.026632	[0.02-0.034] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
932	chr6	45569862	45569863	rs9472521	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	6p21.1		rs9472521-?	NR	3E-11				NR [~ 8900000] (imputed)	N
932	chr6	45572498	45572499	rs7752183	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p21.1	NR	rs7752183-A	0.114405	2E-10				Affymetrix, Illumina [24649327] (imputed)	N
932	chr6	45572498	45572499	rs7752183	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	6p21.1	NR	rs7752183-A	0.101707	4E-12		0.021138	[0.015-0.027] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
932	chr6	45574049	45574050	rs73457129	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 21)	3,566 European ancestry individuals	4,680 European ancestry individuals	6p21.1		rs73457129-A	0.149130435	5E-8				Illumina [7417619] (imputed)	N
932	chr6	45577648	45577649	rs79421535	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p21.1	NR	rs79421535-C	0.0719385	9E-15				Affymetrix, Illumina [23467995] (imputed)	N
932	chr6	45601349	45601350	rs117787235	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	6p21.1	NR	rs117787235-?	NR	2E-6	(Native Hawaiian)	0.679	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
933	chr6	45622747	45622748	rs9472541	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	6p21.1	RUNX2	rs9472541-A	0.2853	2E-9		0.0154	[0.01-0.02] unit decrease	Affymetrix [19819130] (imputed)	N
933	chr6	45631529	45631530	rs74697776	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	6p21.1	NR	rs74697776-?		4E-6				Illumina [4322238] (imputed)	N
933	chr6	45634091	45634092	rs9349322	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6p21.1	RUNX2	rs9349322-C	0.146494	1E-9		0.019056851	[0.013-0.025] unit increase	Affymetrix [93095623] (imputed)	N
933	chr6	45634091	45634092	rs9349322	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p21.1	NR	rs9349322-C	0.221183	2E-14				Affymetrix, Illumina [19872809] (imputed)	N
933	chr6	45634091	45634092	rs9349322	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	6p21.1	NR	rs9349322-C	0.146915	4E-15		0.022029	[0.017-0.028] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
933	chr6	45634091	45634092	rs9349322	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	6p21.1		rs9349322-?	NR	5E-14				NR [~ 8900000] (imputed)	N
933	chr6	45650014	45650015	rs1388242	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	6p21.1		rs1388242-?	NR	1E-10				NR [~ 8900000] (imputed)	N
933	chr6	45650014	45650015	rs1388242	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6p21.1		rs1388242-?	NR	4E-9				NR [~ 8900000] (imputed)	N
933	chr6	45683257	45683258	rs76952758	32238385	Nakayama A	2020-04-01	Ann Rheum Dis	Subtype-specific gout susceptibility loci and enrichment of selection pressure on ABCG2 and ALDH2 identified by subtype genome-wide meta-analyses of clinically defined gout patients.	Gout (normal type)	92 Japanese ancestry male cases, 4,554 Japanese ancestry male controls	NA	6p21.1	RUNX2, CLIC5	rs76952758-T	0.014	8E-7		7.29	[3.31-16.07]	Illumina [7206774] (imputed)	N
933	chr6	45696787	45696788	rs1932040	22699663	Divaris K	2012-07-01	J Dent Res	Genome-wide association study of periodontal pathogen colonization.	Periodontal microbiota	1,020 European ancestry individuals	NA	6p21.1	CLIC5, RUNX2	rs1932040-G	0.808	1E-6	(Orange)	2.47	[1.67-3.65]	Affymetrix [~ 2500000] (imputed)	N
933	chr6	45705078	45705079	rs10948250	33109212	Chang H	2020-10-28	BMC Med	Genetic architecture of cardiometabolic risks in people living with HIV.	LDL cholesterol levels in HIV infection	3,095 European ancestry individuals, 3,189 African American individuals	NA	6p21.1	RUNX2, CLIC5	rs10948250-?		5E-6	(EA)	0.11508503	[0.066-0.164] unit increase	Illumina [13620258] (imputed)	N
933	chr6	45705078	45705079	rs10948250	33109212	Chang H	2020-10-28	BMC Med	Genetic architecture of cardiometabolic risks in people living with HIV.	LDL cholesterol levels in HIV infection	3,095 European ancestry individuals, 3,189 African American individuals	NA	6p21.1	RUNX2, CLIC5	rs10948250-?		5E-6	(African American)	0.11508503	[0.066-0.164] unit increase	Illumina [13620258] (imputed)	N
933	chr6	45725830	45725830	rs138181578	32077919	Antikainen AAV	2020-02-20	Cardiovasc Res	Genome-wide association study on coronary artery disease in type 1 diabetes suggests beta-defensin 127 as a risk locus.	Coronary artery disease in type 1 diabetes	941 European ancestry cases, 3,928 European ancestry controls	434 cases, 3,123 controls	6p21.1	LOC107986519, CLIC5	rs138181578-AT	0.99	7E-7		0.18	[0.09-0.35]	Illumina [8744746] (imputed)	N
934	chr6	45753818	45753819	rs1026149	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	6p21.1	NR	rs1026149-T	0.253534	2E-17		0.0298431	[0.023-0.037] unit increase	NR [19129689] (imputed)	N
934	chr6	45756666	45756667	rs1375694	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	6p21.1		rs1375694-?	NR	9E-12				NR [~ 8900000] (imputed)	N
934	chr6	45819769	45819770	rs17288586	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (CGI-S score)	1,390 European ancestry cases	NA	6p21.1		rs17288586-?	NR	7E-6	(MLM)	0.23989	[0.14-0.34] unit increase	Illumina [~ 9000000] (imputed)	N
934	chr6	45841469	45841470	rs76801943	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.1	CLIC5	rs76801943-G	0.9859375	2E-10	(CLIC5, 12475_48_3)	0.62116975	[0.43-0.81] unit increase	Illumina [> 1000000] (imputed)	N
934	chr6	45857951	45857952	rs6941594	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p21.1		rs6941594-?	NR	8E-11		0.0133542	[0.0092-0.0175] unit increase	Affymetrix [20259828] (imputed)	N
934	chr6	45864583	45864584	rs56253836	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	6p21.1	CLIC5	rs56253836-A	0.585203	2E-11		0.0124271	[0.0088-0.0161] unit increase	NR [13737936] (imputed)	N
934	chr6	45872329	45872330	rs3957316	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	6p21.1		rs3957316-?	NR	1E-10				NR [~ 8900000] (imputed)	N
935	chr6	45885060	45885061	rs4714888	23326517	Holliday EG	2013-01-11	PLoS One	Insights into the genetic architecture of early stage age-related macular degeneration: a genome-wide association study meta-analysis.	Age-related macular degeneration	3,772 European ancestry cases, 16,033 European ancestry controls	264 Asian ancestry cases, 3,926 Asian ancestry controls	6p21.1	intergenic	rs4714888-T	0.05	8E-6		1.3	[1.16-1.47]	Affymetrix, Illumina [~ 2500000] (imputed)	N
935	chr6	45885861	45885862	rs3777544	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	6p21.1		rs3777544-C	0.38	8E-9		5.77	z score increase	Affymetrix [9061022] (imputed)	N
935	chr6	45901915	45901916	rs9349337	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	6p21.1		rs9349337-?	NR	2E-17				NR [~ 8900000] (imputed)	N
935	chr6	45901915	45901916	rs9349337	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	6p21.1	CLIC5	rs9349337-?	NR	6E-10		1.0545186	NR	Affymetrix [9154080] (imputed)	N
935	chr6	45916998	45916999	rs35822882	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CLIC5	5,364 Icelandic ancestry individuals	NA	6p21.1		rs35822882-T	0.01989	3E-95		1.28605	[1.16-1.41] unit decrease	Illumina [7506463] (imputed)	N
935	chr6	45916998	45916999	rs35822882	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.1	CLIC5	rs35822882-T	0.034	7E-27	(Chloride intracellular channel protein 5, CLIC5.12475.48.3)	0.73	[0.59-0.87] unit decrease	Affymetrix [10572788] (imputed)	N
935	chr6	45928726	45928727	rs4714896	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	6p21.1	CLIC5	rs4714896-T	0.648	6E-9		0.079	[0.052-0.106] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
936	chr6	46010848	46010849	rs12201489	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Unilateral cleft lip and palate	205 Asian ancestry cases, 315 European ancestry cases, 692 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	6p21.1	NR	rs12201489-?	NR	9E-6		1.48	[1.37-1.59]	Illumina [539000] (imputed)	N
936	chr6	46027382	46027383	rs9296477	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Cerebrospinal AB1-42 levels in normal cognition	305 European ancestry cognitively normal individuals	NA	6p21.1	CLIC5, RUNX2, ENPP4	rs9296477-C	0.14	7E-7		0.71	[0.44-0.98] unit decrease	Illumina [8257341] (imputed)	N
936	chr6	46044236	46044237	rs4714902	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	6p21.1	Intergenic	rs4714902-?	NR	5E-6		1.363	[NR]	Affymetrix [492217] (imputed)	N
936	chr6	46074655	46074656	rs9472686	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein UXS1	5,359 Icelandic ancestry individuals	NA	6p21.1		rs9472686-T	0.3818	5E-18		0.165754	[0.13-0.2] unit decrease	Illumina [7506463] (imputed)	N
936	chr6	46078560	46078561	rs62400860	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.1	ENPP5	rs62400860-T	0.95953125	2E-182	(ENPP5, 6556_5_3)	1.6284955	[1.52-1.73] unit increase	Illumina [> 1000000] (imputed)	N
936	chr6	46090937	46090938	rs144538541	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.1	NR	rs144538541-C	0.051	8E-278	(Ectonucleotide pyrophosphatase/phosphodiesterase family member 5, ENPP5.6556.5.3)	1.7	[1.6-1.8] unit decrease	Affymetrix [10572788] (imputed)	N
936	chr6	46097568	46097569	rs7754915	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	6p21.1	RP1-8B1.4, ENPP4	rs7754915-A	0.650223	8E-10		0.014527962	[0.0099-0.0192] unit decrease	Affymetrix [93095623] (imputed)	N
936	chr6	46105773	46105774	rs146839869	28439531	Aslibekyan S	2017-03-08	J Nutr Intermed Metab	Genome- and CD4+ T-cell methylome-wide association study of circulating trimethylamine-N-oxide in the Genetics of Lipid Lowering Drugs and Diet Network (GOLDN).	Plasma trimethylamine N-oxide levels	626 European ancestry individuals	NA	6p21.1	ENPP4	rs146839869-?	NR	4E-7		1.39	[0.86-1.92] uM decrease	Affymetrix [9432837] (imputed)	N
936	chr6	46110844	46110844	rs35942390	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.1	NR	rs35942390-TGA	0.487	1E-176	(Ectonucleotide pyrophosphatase/phosphodiesterase family member 5, ENPP5.6556.5.3)	0.69	[0.65-0.73] unit decrease	Affymetrix [10572788] (imputed)	N
936	chr6	46118052	46118052	rs34269469	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6p21.1	ENPP4	rs34269469-TA	0.644098	6E-11		0.014937258	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
936	chr6	46118052	46118052	rs34269469	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	6p21.1	ENPP4	rs34269469-TA	0.644157	7E-11		0.01507954	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
936	chr6	46128744	46128745	rs1047153	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ENPP5	5,349 Icelandic ancestry individuals	NA	6p21.1		rs1047153-C	0.3363	4E-240		0.562293	[0.53-0.6] unit increase	Illumina [7506463] (imputed)	N
936	chr6	46128744	46128745	rs1047153	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.1	ENPP5	rs1047153-T	0.646	8E-299	(Ectonucleotide pyrophosphatase/phosphodiesterase family member 5, ENPP5.6556.5.3)	0.79	[0.75-0.83] unit decrease	Affymetrix [10572788] (imputed)	N
937	chr6	46145460	46145461	rs2223776	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p21.1	NR	rs2223776-?	NR	1E-6		4.889	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
937	chr6	46150069	46150070	rs114961115	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Lymphocytic leukemia	852 European ancestry cases, 410,350 European ancestry controls	NA	6p21.1		rs114961115-A	0.027043	7E-7		1.8178513	NR	Affymetrix [7846216] (imputed)	N
937	chr6	46151385	46151386	rs9472719	28736931	Rotroff DM	2017-07-24	Clin Pharmacol Ther	Genetic Variants in HSD17B3, SMAD3, and IPO11 Impact Circulating Lipids in Response to Fenofibrate in Individuals With Type 2 Diabetes.	Total cholesterol change in response to fenofibrate in statin-treated type 2 diabetes	781 European ancestry individuals, 138 African American ancestry individuals, 345 unknown ancestry individuals		6p21.1	intergenic	rs9472719-?	NR	9E-7		0.008	unit increase	Affymetrix, Illumina [8129838] (imputed)	N
937	chr6	46237609	46237610	rs78393153	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Megamonas funiformis abundance in stool	5,959 Finnish ancestry individuals	NA	6p12.3		rs78393153-T	0.0162327	3E-8		0.23191	[0.15-0.31] unit increase	Illumina [7980478] (imputed)	N
938	chr6	46306546	46306547	rs12055796	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 22)	3,566 European ancestry individuals	4,680 European ancestry individuals	6p12.3		rs12055796-T	0.473735955	2E-8				Illumina [7417619] (imputed)	N
938	chr6	46335168	46335169	rs9357506	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	6p12.3	RCAN2	rs9357506-G	0.553	7E-6		0.016	[0.0091-0.0233] kg/m2 increase	Affymetrix, Illumina [2550021]	N
938	chr6	46363556	46363557	rs10498767	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6p12.3	NR	rs10498767-?	NR	1E-10				Affymetrix [~ 8270000] (imputed)	N
938	chr6	46363556	46363557	rs10498767	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	6p12.3		rs10498767-?	NR	2E-10				NR [~ 8900000] (imputed)	N
938	chr6	46363556	46363557	rs10498767	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	6p12.3	NA	rs10498767-C	0.4537	5E-16		0.0138	[0.01-0.017] unit decrease	NR [~ 27400000] (imputed)	N
938	chr6	46373057	46373058	rs4598074	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Neuroticism	170,911 European ancestry individuals	NA	6p12.3	NR	rs4598074-A	0.821	7E-6		0.020074598	[0.011-0.029] unit decrease	Affymetrix [up to 6544775] (imputed)	N
938	chr6	46375325	46375326	rs2153615	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	6p12.3	NA	rs2153615-A	0.4447	9E-16		0.0137	[0.01-0.017] unit decrease	NR [~ 27400000] (imputed)	N
939	chr6	46422724	46422725	rs59657730	35115690	Lopera-Maya EA	2022-02-03	Nat Genet	Effect of host genetics on the gut microbiome in 7,738 participants of the Dutch Microbiome Project.	Gut bacterial pathway abundance (GLYCOCAT.PWY..glycogen.degradation.I..bacterial.)	7,738 European ancestry individuals	NA	6p12.3		rs59657730-A	0.4400453	4E-8		0.1101054	[0.071-0.149] unit increase	Illumina [5584686] (imputed)	N
939	chr6	46452618	46452619	rs871728	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	6p12.3	RCAN2	rs871728-C	0.42	1E-15		0.52	[0.38-0.66] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
939	chr6	46472376	46472377	rs4585546	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	6p12.3	RCAN2	rs4585546-G	0.3975	1E-14		0.5201	[0.39-0.65] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
940	chr6	46541230	46541231	rs2178052	31904872	Chou WC	2020-01-06	Int J Cancer	A Functional Variant Near XCL1 Gene Improves Breast Cancer Survival via Promoting Cancer Immunity.	Survival in breast cancer (estrogen-receptor positive)	953 Taiwanese individuals	NA	6p12.3	intergenic	rs2178052-?		5E-6				Affymetrix [632566] (imputed)	N
940	chr6	46601580	46601581	rs71566584	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p12.3	PLA2G7	rs71566584-A	0.95953125	2E-6	(PLA2G7, 5015_15_1)	0.292511	[0.17-0.41] unit decrease	Illumina [> 1000000] (imputed)	N
940	chr6	46609904	46609905	rs2277119	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Hydroxycholesterol_[M+H-2H2O]1+ levels	13,814 British ancestry individuals	NA	6p12.3		rs2277119-T	NR	9E-15		0.0896286	[0.067-0.112] unit increase	Affymetrix [87696910] (imputed)	N
940	chr6	46623978	46623979	rs183433534	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	6p12.3	SLC25A27	rs183433534-A	0.996	3E-6	(AA)	0.214	unit increase	Illumina [NR] (imputed)	N
940	chr6	46629504	46629505	rs9296504	27659466	van der Harst P	2016-09-27	J Am Coll Cardiol	52 Genetic Loci Influencing Myocardial Mass.	QRS complex (Sokolow-Lyon)	up to 54,303 European ancestry individuals, up to 690 Orcadian (founder/genetic isolate) individuals	13,263 European ancestry individuals, 3,603 African American individuals, 4,619 Indian ancestry individuals	6p12.3	NR	rs9296504-?	NR	2E-6	(EA)			Affymetrix, Illumina, Perlegen [2766983] (imputed)	N
940	chr6	46644874	46644875	rs2270450	25429627	Oryoji D	2014-11-27	J Clin Endocrinol Metab	Identification of a Hashimoto thyroiditis susceptibility locus via a genome-wide comparison with Graves' disease.	Hashimoto thyroiditis versus Graves' disease	263 Japanese ancestry Hashimoto thyroiditis cases, 260 Japanese ancestry Graves' disease cases	181 Japanese ancestry Hashimoto thyroiditis cases, 286 Japanese ancestry Graves' disease cases	6p12.3	SLC25A27	rs2270450-T	0.178	1E-6		1.75	[1.40-2.19]	Illumina [546173]	N
941	chr6	46675024	46675025	rs7756935	22003152	Grallert H	2011-10-14	Eur Heart J	Eight genetic loci associated with variation in lipoprotein-associated phospholipase A2 mass and activity and coronary heart disease: meta-analysis of genome-wide association studies from five community-based studies.	Lipoprotein-associated phospholipase A2 activity and mass	12,126 European ancestry individuals, 1,538 individuals	NA	6p12.3	PLA2G7	rs7756935-A	0.81	1E-10	(Activity concentrations)	0.027	[0.019-0.035] unit decrease	Affymetrix, Illumina [2661766] (imputed)	N
941	chr6	46677097	46677098	rs76863441	28753643	Yeo A	2017-07-28	PLoS One	Pharmacogenetic meta-analysis of baseline risk factors, pharmacodynamic, efficacy and tolerability endpoints from two large global cardiovascular outcomes trials for darapladib.	Lipoprotein-associated phospholipase A2 activity change in response to darapladib treatment in cardiovascular disease	10,874 European, Asian, African, Arabic, Native American, Pacific Islander and other ancestry	NA	6p12.3	PLA2G7	rs76863441-A	0.01019	8E-47		0.2355	[-4.3313-4.8023] unit decrease	Affymetrix, Illumina [13572687] (imputed)	N
941	chr6	46677097	46677098	rs76863441	28753643	Yeo A	2017-07-28	PLoS One	Pharmacogenetic meta-analysis of baseline risk factors, pharmacodynamic, efficacy and tolerability endpoints from two large global cardiovascular outcomes trials for darapladib.	Lipoprotein phospholipase A2 activity in cardiovascular disease	22,156 European, Asian, African, Arabic, Native American, Pacific Islander and other ancestry	NA	6p12.3	PLA2G7	rs76863441-A	0.01019	1E-178		72.79	[67.79-77.79] (nmol/min/ml) decrease	Affymetrix, Illumina [13572687] (imputed)	N
941	chr6	46677097	46677098	rs76863441	28031287	Sasayama D	2016-11-26	Hum Mol Genet	Genome-wide quantitative trait loci mapping of the human cerebrospinal fluid proteome.	Cerebrospinal fluid biomarker levels	133 Japanese ancestry individuals.	NA	6p12.3	NR	rs76863441-?	NR	3E-19	(Platelet-activating factor acetylhydrolase)			Illumina [514227]	N
941	chr6	46682078	46682079	rs1362931	23118302	Chu AY	2012-11-01	Circ Cardiovasc Genet	Genome-wide association study evaluating lipoprotein-associated phospholipase A2 mass and activity at baseline and after rosuvastatin therapy.	Lipoprotein-associated phospholipase A2 activity and mass	6,851 European ancestry individuals	13,664 European ancestry individuals	6p12.3	PLA2G7	rs1362931-A	0.19	3E-19	(activity)	0.0231	[0.016-0.030] ng/ml increase	Illumina [796174]	N
941	chr6	46684221	46684222	rs1805017	22003152	Grallert H	2011-10-14	Eur Heart J	Eight genetic loci associated with variation in lipoprotein-associated phospholipase A2 mass and activity and coronary heart disease: meta-analysis of genome-wide association studies from five community-based studies.	Lipoprotein-associated phospholipase A2 activity and mass	12,126 European ancestry individuals, 1,538 individuals	NA	6p12.3	PLA2G7	rs1805017-T	0.26	2E-23	(Mass concentrations)	0.043	[0.035-0.051] unit increase	Affymetrix, Illumina [2661766] (imputed)	N
941	chr6	46684221	46684222	rs1805017	20442857	Suchindran S	2010-04-29	PLoS Genet	Genome-wide association study of Lp-PLA(2) activity and mass in the Framingham Heart Study.	Lipoprotein-associated phospholipase A2 activity and mass	6,668 European ancestry individuals	NA	6p12.3	PLA2G7	rs1805017-T	0.26	6E-14	(mass)	11.1	[NR] ng/mL increase	Affymetrix [360811]	N
941	chr6	46733799	46733800	rs6922182	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Perceived unattractiveness to mosquitoes	16,576 European ancestry individuals	NA	6p12.3	intergenic	rs6922182-G	NR	5E-6		0.346924	[0.2-0.5] unit increase	Illumina [7433384] (imputed)	N
942	chr6	46816352	46816353	rs185310586	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-hip ratio	1,254 whole genome sequenced European ancestry individuals, 3,071 whole genome sequenced individuals, 29,723 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,053 Mylopotamos (founder/genetic isolate) individuals, 879 Pomak (founder/genetic isolate) individuals	206,053 European ancestry individuals	6p12.3	ADGRF5	rs185310586-A	0.0013	3E-6		1.097	[0.63-1.56] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
942	chr6	46822348	46822349	rs475991	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ADGRF5	5,349 Icelandic ancestry individuals	NA	6p12.3		rs475991-A	0.03297	2E-185		1.42417	[1.33-1.52] unit decrease	Illumina [7506463] (imputed)	N
942	chr6	46826909	46826910	rs611779	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p12.3	ADGRF5	rs611779-A	0.96625	2E-81	(ADGRF5, 6409_57_3)	1.2789339	[1.15-1.41] unit increase	Illumina [> 1000000] (imputed)	N
942	chr6	46827612	46827613	rs9395219	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ADGRF5	5,349 Icelandic ancestry individuals	NA	6p12.3		rs9395219-A	0.1957	9E-19		0.206081	[0.16-0.25] unit decrease	Illumina [7506463] (imputed)	N
942	chr6	46832263	46832266	rs200329634	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p12.3	NR	rs200329634-A	0.22	9E-20	(Adhesion G protein-coupled receptor F5, ADGRF5.6409.57.3)	0.27	[0.21-0.33] unit decrease	Affymetrix [10572788] (imputed)	N
942	chr6	46834053	46834055	rs62875162	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p12.3	GPR116	rs62875162-C	0.938	2E-197	(Adhesion G protein-coupled receptor F5, ADGRF5.6409.57.3)	1.36	[1.26-1.46] unit increase	Affymetrix [10572788] (imputed)	N
942	chr6	46871184	46871185	rs1328965	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p12.3	NR	rs1328965-T	0.260401	6E-12				Affymetrix, Illumina [21126107] (imputed)	N
942	chr6	46871184	46871185	rs1328965	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	6p12.3	NR	rs1328965-T	0.242298	3E-10		0.014766	[0.01-0.019] SD unit increase	Affymetrix, Illumina [50282193] (imputed)	N
942	chr6	46872993	46872994	rs1234122	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p12.3	NR	rs1234122-G	0.469221	2E-11				Affymetrix, Illumina [24246363] (imputed)	N
942	chr6	46875170	46875171	rs980378	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	6p12.3		rs980378-T	NR	5E-9		0.0134	[0.0089-0.0179] unit increase	Affymetrix, Illumina [20536605] (imputed)	N
942	chr6	46882164	46882165	rs4714958	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	6p12.3	GPR116	rs4714958-T	0.137384	4E-17		0.027710956	[0.021-0.034] unit increase	Affymetrix [93095623] (imputed)	N
942	chr6	46882164	46882165	rs4714958	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	6p12.3	GPR116	rs4714958-T	0.137123	3E-11		0.021388901	[0.015-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
942	chr6	46882164	46882165	rs4714958	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	6p12.3	NR	rs4714958-T	0.137818	6E-14		0.020902	[0.015-0.026] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
942	chr6	46882903	46882904	rs9472903	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	6p12.3		rs9472903-G	NR	2E-10		0.0176	[0.012-0.023] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
942	chr6	46885843	46885844	rs12191082	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	6p12.3		rs12191082-?	NR	2E-13				NR [~ 8900000] (imputed)	N
942	chr6	46885843	46885844	rs12191082	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	6p12.3	GPR116	rs12191082-A	0.1365	3E-10		0.03324489	[0.023-0.044] unit decrease	Affymetrix [~ 2500000] (imputed)	N
942	chr6	46893354	46893355	rs2012011	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	6p12.3		rs2012011-A	NR	1E-16		0.025	[0.019-0.031] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
942	chr6	46893354	46893355	rs2012011	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p12.3	GPR116	rs2012011-A	0.134974	2E-17		0.027354037	[0.021-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
942	chr6	46893354	46893355	rs2012011	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	6p12.3	GPR116	rs2012011-A	0.134986	2E-26		0.03442563	[0.028-0.041] unit decrease	Affymetrix [93095623] (imputed)	N
942	chr6	46893354	46893355	rs2012011	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	6p12.3	GPR116	rs2012011-A	0.135274	2E-20		0.030516736	[0.024-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
942	chr6	46893354	46893355	rs2012011	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p12.3	NR	rs2012011-A	0.135421	7E-26				Affymetrix, Illumina [24649327] (imputed)	N
942	chr6	46893354	46893355	rs2012011	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	6p12.3	NR	rs2012011-A	0.136123	2E-21		0.025502	[0.02-0.031] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
942	chr6	46893354	46893355	rs2012011	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p12.3	NR	rs2012011-A	0.135031	3E-15				Affymetrix, Illumina [23114412] (imputed)	N
942	chr6	46893354	46893355	rs2012011	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p12.3	NR	rs2012011-A	0.135016	8E-34				Affymetrix, Illumina [23467995] (imputed)	N
942	chr6	46893354	46893355	rs2012011	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	6p12.3	NR	rs2012011-A	0.135762	5E-34		0.033258	[0.028-0.039] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
942	chr6	46893354	46893355	rs2012011	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	6p12.3	GPR116	rs2012011-A	0.1357	2E-12		0.03691242	[0.027-0.047] unit decrease	Affymetrix [~ 2500000] (imputed)	N
942	chr6	46895072	46895073	rs7766060	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	6p12.3	NR	rs7766060-G	0.615242	2E-10		0.012015	[0.0083-0.0157] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
942	chr6	46919886	46919887	rs4449617	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	6p12.3	NR	rs4449617-?	NR	5E-10				Affymetrix [NR]	N
943	chr6	46957390	46957391	rs62401797	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Varicose veins	22,037 European ancestry cases, 437,665 European ancestry controls, 474 East Asian ancestry cases, 178,252 East Asian ancestry controls	NA	6p12.3		rs62401797-G	NR	4E-8		0.1299	[0.083-0.176] unit decrease	Affymetrix, Illumina [25842955] (imputed)	N
943	chr6	46964378	46964379	rs7759613	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	6p12.3	GPR110	rs7759613-T	0.308203	6E-15		0.019270046	[0.014-0.024] unit increase	Affymetrix [93095623] (imputed)	N
943	chr6	46974812	46974813	rs1226474	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	6p12.3	NR	rs1226474-?	NR	8E-6		1830.64	NR unit increase	Illumina [2379855]	N
944	chr6	47076516	47076517	rs117927258	29923122	Kakuta Y	2018-06-19	J Gastroenterol	NUDT15 codon 139 is the best pharmacogenetic marker for predicting thiopurine-induced severe adverse events in Japanese patients with inflammatory bowel disease: a multicenter study.	Thiopurine-induced alopecia in inflammatory bowel disease	81 Japanese ancestry cases, 1,139 Japanese ancestry controls	NA	6p12.3	GPR110, TNFRSF21, GPR116	rs117927258-?	NR	2E-7		6.5	[3.2-13.2]	Affymetrix [> 5000000] (imputed)	N
944	chr6	47098661	47098662	rs17525864	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p12.3	NR	rs17525864-?	NR	3E-6		4.642	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
944	chr6	47107963	47107964	rs181541997	27997041	Traylor M	2016-12-20	Ann Neurol	Genetic variation at 16q24.2 is associated with small vessel stroke.	Ischemic stroke	10,210 European ancestry cases, 12,285 European ancestry controls	7,743 European ancestry cases, 17,970 European ancestry controls	6p12.3	NR	rs181541997-?	NR	7E-6		4.491	z score increase	Affymetrix, Illumina [NR] (imputed)	N
944	chr6	47145371	47145372	rs2144019	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6p12.3	GPR110	rs2144019-?	NR	8E-6	(3-hydroxyanthranilic acid)	0.5310788	[0.3-0.76] unit increase	Affymetrix [at least 2500000] (imputed)	N
945	chr6	47230614	47230615	rs2103868	19165232	Otowa T	2009-01-23	J Hum Genet	Genome-wide association study of panic disorder in the Japanese population.	Panic disorder	200 Japanese ancestry cases, 200 Japanese ancestry controls	NA	6p12.3	TNFRSF21	rs2103868-?	0.26	5E-6				Affymetrix [253903]	N
945	chr6	47247331	47247332	rs115190338	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin I concentration	1,606 African American individuals	NA	6p12.3		rs115190338-?	NR	7E-6		0.28	[0.16-0.4] unit increase	Affymetrix, Illumina [NR] (imputed)	N
945	chr6	47272688	47272689	rs2295259	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6p12.3	CD2AP	rs2295259-?	NR	9E-6	(fructose; glucose; galactose)	0.38010076	[0.21-0.55] unit increase	Affymetrix [at least 2500000] (imputed)	N
946	chr6	47327495	47327496	rs56256194	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	6p12.3		rs56256194-C	0.104502	5E-14		0.02757887	[0.02-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
946	chr6	47328416	47328417	rs11756806	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	6p12.3		rs11756806-T	0.10433	3E-22		0.03577798	[0.029-0.043] unit increase	Affymetrix [93095623] (imputed)	N
946	chr6	47336006	47336007	rs188552424	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (executive function) x major depressive disorder interaction (2df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	6p12.3		rs188552424-A	0.01	4E-8				NR [NR] (imputed)	N
946	chr6	47336006	47336007	rs188552424	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (executive function) x major depressive disorder interaction (1df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	6p12.3		rs188552424-A	0.01	7E-8		1.88	[1.19-2.57] unit decrease	NR [NR] (imputed)	N
946	chr6	47369201	47369202	rs4288204	31211820	Deek R	2019-06-18	PLoS One	Genome-wide association analysis of HDL-C in a Lebanese cohort.	High density lipoprotein cholesterol levels	2,700 Lebanese ancestry individuals	NA	6p12.3	intergenic	rs4288204-A	NR	2E-6		0.0366	[0.0215-0.0518] unit increase	Illumina [307238]	N
946	chr6	47392542	47392543	rs9395255	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	6p12.3	NR	rs9395255-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
946	chr6	47412399	47412400	rs57145703	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip and palate	121 Asian ancestry cases, 159 European ancestry cases, 285 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	6p12.3	NR	rs57145703-?	NR	2E-6		2.23	[2.06-2.41]	Illumina [539000] (imputed)	N
946	chr6	47431283	47431284	rs9473117	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p12.3	NR	rs9473117-A	0.72798	8E-35				Affymetrix, Illumina [22063850] (imputed)	N
946	chr6	47432636	47432637	rs9381563	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	6p12.3		rs9381563-T	0.6418	1E-7		38.19923	z score increase	NR [6814003]	N
946	chr6	47432636	47432637	rs9381563	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Family history of Alzheimer's disease	47,793 European ancestry cases, 328,320 European ancestry controls	NA	6p12.3	CD2AP	rs9381563-C	NR	8E-6		4.463	NR z-score increase	Affymetrix [10847151] (imputed)	N
946	chr6	47432636	47432637	rs9381563	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	6p12.3	CD2AP	rs9381563-C	0.355	3E-10		6.33	NR z-unit increase	Affymetrix, Illumina [up to 10847151] (imputed)	N
946	chr6	47432636	47432637	rs9381563	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease (late onset)	24,087 European ancestry cases, 55,058 European ancestry controls	NA	6p12.3	CD2AP	rs9381563-C	NR	5E-9		5.835869	NR z-score increase	Illumina [up to 9862738] (imputed)	N
946	chr6	47432636	47432637	rs9381563	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	6p12.3	NR	rs9381563-?	NR	1E-12				Affymetrix [7795605] (imputed)	N
946	chr6	47436966	47436968	rs34825628	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	6p12.3		rs34825628-T	0.234864	3E-16		0.022664303	[0.017-0.028] unit increase	Affymetrix [93095623] (imputed)	N
946	chr6	47437697	47437698	rs34245545	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	6p12.3	NR	rs34245545-A	0.275745	1E-22		0.02443701	[0.02-0.029] unit increase	Affymetrix [93095623] (imputed)	N
946	chr6	47437697	47437698	rs34245545	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6p12.3	NR	rs34245545-A	0.275741	2E-24		0.025455507	[0.021-0.03] unit increase	Affymetrix [93095623] (imputed)	N
946	chr6	47437697	47437698	rs34245545	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	6p12.3		rs34245545-A	0.275707	5E-36		0.031130517	[0.026-0.036] unit increase	Affymetrix [93095623] (imputed)	N
946	chr6	47437697	47437698	rs34245545	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6p12.3		rs34245545-A	0.27571	7E-38		0.032001577	[0.027-0.037] unit increase	Affymetrix [93095623] (imputed)	N
946	chr6	47439751	47439752	rs116874127	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	6p12.3		rs116874127-A	0.05743	7E-9		0.026581	[0.018-0.036] unit increase	Illumina [13479295] (imputed)	N
946	chr6	47440564	47440565	rs9369695	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	6p12.3	CD2AP	rs9369695-A	0.2745	7E-12		0.02740763	[0.02-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
946	chr6	47441870	47441871	rs4715018	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	6p12.3	CD2AP	rs4715018-C	0.276124	9E-37		0.03160555	[0.027-0.036] unit increase	Affymetrix [93095623] (imputed)	N
946	chr6	47441870	47441871	rs4715018	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	6p12.3		rs4715018-?	NR	3E-32				NR [~ 8900000] (imputed)	N
947	chr6	47448335	47448336	rs9367279	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	6p12.3	CD2AP	rs9367279-G	0.2747	2E-11		0.02681282	[0.019-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
947	chr6	47452269	47452270	rs9296559	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	6p12.3	CD2AP	rs9296559-C	0.2752	1E-17		0.03398925	[0.026-0.042] unit increase	Affymetrix [~ 2500000] (imputed)	N
947	chr6	47452269	47452270	rs9296559	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	6p12.3	CD2AP	rs9296559-C	0.2753	5E-17		0.03353401	[0.026-0.041] unit increase	Affymetrix [~ 2500000] (imputed)	N
947	chr6	47452269	47452270	rs9296559	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	6p12.3	CD2AP	rs9296559-C	0.2753	7E-18		0.03449695	[0.027-0.042] unit increase	Affymetrix [~ 2500000] (imputed)	N
947	chr6	47453377	47453378	rs9349407	21460841	Naj AC	2011-04-03	Nat Genet	Common variants at MS4A4/MS4A6E, CD2AP, CD33 and EPHA1 are associated with late-onset Alzheimer's disease.	Alzheimer's disease (late onset)	8,309 European ancestry cases, 7,366 European ancestry controls	10,523 European ancestry cases, 28,231 European ancestry controls	6p12.3	CD2AP	rs9349407-C	0.27	9E-9		1.11	[1.07-1.15]	Affymetrix, Illumina [2324889] (imputed)	N
947	chr6	47487761	47487762	rs10948363	31473137	Moreno-Grau S	2019-08-13	Alzheimers Dement	Genome-wide association analysis of dementia and its clinical endophenotypes reveal novel loci associated with Alzheimer's disease and three causality networks: The GR@ACE project.	Alzheimer's disease	4,120 Spanish ancestry cases, 17,008 cases, 3,289 Spanish ancestry controls, 37,154 controls	1,943 Spanish ancestry cases, 8,572 cases, 3,016 Spanish ancestry controls, 11,312 controls	6p12.3	CD2AP	rs10948363-?	NR	5E-9		1.1	[1.13-1.06]	Affymetrix [up to 7055881] (imputed)	N
947	chr6	47487761	47487762	rs10948363	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	6p12.3	CD2AP	rs10948363-G	0.2754	1E-8		5.72	NR z-unit increase	Affymetrix, Illumina [up to 10847151] (imputed)	N
947	chr6	47487761	47487762	rs10948363	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease (late onset)	24,087 European ancestry cases, 55,058 European ancestry controls	NA	6p12.3	CD2AP	rs10948363-G	NR	7E-8		5.39	NR z-score increase	Illumina [up to 9862738] (imputed)	N
947	chr6	47487761	47487762	rs10948363	24162737	Lambert JC	2013-10-27	Nat Genet	Meta-analysis of 74,046 individuals identifies 11 new susceptibility loci for Alzheimer's disease.	Alzheimer's disease (late onset)	17,008 European ancestry cases, 37,154 European ancestry controls	8,572 European ancestry cases, 11,312 European ancestry controls	6p12.3	CD2AP	rs10948363-G	0.266	5E-11		1.1	[1.07-1.13]	Illumina [7055881] (imputed)	N
947	chr6	47499809	47499809	rs36046942	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	6p12.3	CD2AP	rs36046942-CA	0.262975	1E-31		0.029592441	[0.025-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
947	chr6	47499809	47499809	rs36046942	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	6p12.3	NR	rs36046942-I	0.263556	2E-38		0.030523	[0.026-0.035] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
947	chr6	47522356	47522357	rs9473132	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6p12.3		rs9473132-?	NR	2E-37				NR [~ 8900000] (imputed)	N
947	chr6	47537877	47537878	rs5876027	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6p12.3	CD2AP	rs5876027-C	0.286468	3E-12		0.016959874	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
947	chr6	47537877	47537878	rs5876027	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	6p12.3	CD2AP	rs5876027-C	0.284	4E-15		0.03085689	[0.023-0.039] unit decrease	Affymetrix [~ 2500000] (imputed)	N
947	chr6	47552179	47552180	rs9369716	34493870	Wightman DP	2021-09-07	Nat Genet	A genome-wide association study with 1,126,563 individuals identifies new risk loci for Alzheimer's disease.	Late-onset Alzheimer's disease	90,338 cases, 1,036,225 controls	NA	6p12.3		rs9369716-?	NR	2E-17				Illumina [NR] (imputed)	N
947	chr6	47552919	47552920	rs6940729	26519441	Kim S	2015-10-30	J Alzheimers Dis	Genetic Influences on Plasma Homocysteine Levels in African Americans and Yoruba Nigerians.	Plasma homocysteine levels	853 African American cognitively normal individuals, 45 African American dementia cases, 934 Yoruban ancestry cognitively normal individuals, 26 Yoruban ancestry dementia cases	NA	6p12.3	CD2AP	rs6940729-T	0.4775	5E-8		0.027	[NR] unit decrease	Illumina [NR] (imputed)	N
947	chr6	47578704	47578707	rs201663973	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		CD2AP	rs201663973-?	NR	1E-13	(male)	4.30566	[NR] unit decrease	Affymetrix [NR] (imputed)	N
948	chr6	47594721	47594722	rs719856	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p12.3		rs719856-G	0.765	8E-10				Affymetrix [10369434] (imputed)	N
948	chr6	47595154	47595155	rs1385742	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	6p12.3		rs1385742-T	NR	2E-9		0.0124	[0.0083-0.0165] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
948	chr6	47597240	47597241	rs2046465	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p12.3	CD2AP	rs2046465-C	NR	8E-12		0.0202592	[0.014-0.026] unit decrease	Affymetrix [321016] (imputed)	N
948	chr6	47598124	47598125	rs9395288	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	6p12.3	NR	rs9395288-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
948	chr6	47606028	47606029	rs9357551	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	6p12.3		rs9357551-T	0.2724	1E-6		32.98426	z score increase	NR [6814003]	N
948	chr6	47606028	47606029	rs9357551	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p12.3	NR	rs9357551-T	0.241483	4E-37				Affymetrix, Illumina [24588908] (imputed)	N
948	chr6	47606028	47606029	rs9357551	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	6p12.3	NR	rs9357551-T	0.268433	7E-37		0.02632	[0.022-0.03] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
948	chr6	47606711	47606712	rs4711890	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	6p12.3		rs4711890-G	0.267894	8E-45		0.03695807	[0.032-0.042] unit decrease	Affymetrix [93095623] (imputed)	N
948	chr6	47606711	47606712	rs4711890	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	6p12.3		rs4711890-G	0.267882	2E-44		0.035557	[0.031-0.041] unit decrease	Affymetrix [93095623] (imputed)	N
948	chr6	47606711	47606712	rs4711890	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	6p12.3	intergenic	rs4711890-G	0.2675	1E-13		0.03050902	[0.022-0.039] unit increase	Affymetrix [~ 2500000] (imputed)	N
948	chr6	47609588	47609592	rs71544212	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	6p12.3		rs71544212-G	NR	8E-29		0.0291	[0.024-0.034] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
948	chr6	47609591	47609592	rs9473147	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p12.3	NR	rs9473147-A	0.732483	6E-71				Affymetrix, Illumina [17210439] (imputed)	N
948	chr6	47609591	47609592	rs9473147	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	6p12.3	NR	rs9473147-A	0.732039	2E-71		0.038849	[0.035-0.043] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
948	chr6	47609591	47609592	rs9473147	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	6p12.3	intergenic	rs9473147-G	0.2675	1E-23		0.04075104	[0.033-0.049] unit decrease	Affymetrix [~ 2500000] (imputed)	N
948	chr6	47609591	47609592	rs9473147	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	6p12.3	intergenic	rs9473147-G	0.2675	3E-23		0.04077531	[0.033-0.049] unit decrease	Affymetrix [~ 2500000] (imputed)	N
948	chr6	47612449	47612450	rs6914280	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,931 Sub-Saharan African ancestry males	NA	6p12.3		rs6914280-A	0.534858	7E-6		0.0119572	[0.0066-0.0173] unit increase	Illumina [13900000] (imputed)	N
948	chr6	47618170	47618171	rs12202615	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p12.3		rs12202615-T	0.73	4E-14				Affymetrix [10369434] (imputed)	N
948	chr6	47621578	47621579	rs7772202	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	6p12.3	GPR111	rs7772202-A	0.269174	1E-25		0.026437266	[0.021-0.031] unit increase	Affymetrix [93095623] (imputed)	N
948	chr6	47647220	47647221	rs10948374	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	6p12.3	NR	rs10948374-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
949	chr6	47744653	47744661	rs147457041	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	6p12.3		rs147457041-A	NR	2E-8		0.0302	[0.02-0.041] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
949	chr6	47794170	47794171	rs544677242	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6p12.3	OPN5	rs544677242-T	2.80999999999976E-4	3E-13		0.523412	[0.38-0.66] unit decrease	Affymetrix [93095623] (imputed)	N
950	chr6	47866515	47866516	rs77394059	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	6p12.3	Intergenic	rs77394059-G	0.8932	5E-9		0.0185	[0.012-0.025] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
950	chr6	47882547	47882548	rs12209128	24823311	Guan W	2014-05-13	Circ Cardiovasc Genet	Genome-wide association study of plasma N6 polyunsaturated fatty acids within the cohorts for heart and aging research in genomic epidemiology consortium.	Plasma omega-6 polyunsaturated fatty acid levels (arachidonic acid)	8,631 European ancestry individuals	NA	6p12.3	C6orf138	rs12209128-T	0.379	3E-6		0.15	[NR] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
950	chr6	47953800	47953801	rs4715057	26632684	Dong J	2015-11-01	Medicine (Baltimore)	Genome-wide Meta-analysis on the Sense of Smell Among US Older Adults.	Sense of smell	6,252 European ancestry individuals	NA	6p12.3	C6orf1	rs4715057-A	0.02	6E-6		0.11	[0.071-0.149] ln(smell score+1) increase	Affymetrix, Illumina [2543887] (imputed)	N
951	chr6	48027494	48027495	rs150321190	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	TRAIL levels	8,186 Finnish ancestry individuals	NA	6p12.3	NR	rs150321190-C		2E-6		0.8047	[0.47-1.14] SD units increase	NR [10700000] (imputed)	N
951	chr6	48037887	48037893	rs10595258	34162658	Quinn MC	2021-06-23	Cancer Epidemiol Biomarkers Prev	Identification of a locus near ULK1 associated with progression-free survival in ovarian cancer.	Progression free survival in serous epithelial ovarian cancer	4,037 European ancestry individuals	NA	6p12.3	NR	rs10595258-G		2E-6		0.1817	[0.11-0.26] unit decrease	Illumina [12770451] (imputed)	N
951	chr6	48056395	48056396	rs142690722	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Myringotomy	4,138 European ancestry cases, 85,089 European ancestry controls	NA	6p12.3	NR	rs142690722-?	NR	4E-6		0.3977	[0.24-0.56] unit decrease	Illumina [at least 560000] (imputed)	N
951	chr6	48100187	48100188	rs80209398	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p12.3	NR	rs80209398-T	0.03484	3E-8	(ACO2)	0.3444	NR unit increase	Illumina [1671387] (imputed)	N
952	chr6	48113909	48113910	rs114766077	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p12.3	NR	rs114766077-A	0.01742	2E-9	(AMACR)	0.04813	NR unit increase	Illumina [1671387] (imputed)	N
952	chr6	48113909	48113910	rs114766077	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p12.3	NR	rs114766077-A	0.01742	2E-8	(AGXT)	5.515	NR unit increase	Illumina [1671387] (imputed)	N
952	chr6	48121843	48121843	rs59263024	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking initiation (ever regular vs never regular)	up to 433,216 European ancestry individuals	NA	6p12.3	C6orf138	rs59263024-TA	0.1	3E-8		0.0388	[0.025-0.053] unit increase	Illumina [~ 250000] (imputed)	N
953	chr6	48256391	48256392	rs117362612	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 12, vertical position of sublabial sulcus relative to central midface)	2,187 European ancestry individuals	NA	6p12.3	NR	rs117362612-A	0.008024	2E-6		0.8015	[0.47-1.13] unit increase	Illumina [10677593] (imputed)	N
954	chr6	48416111	48416112	rs180781551	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	6p12.3	NR	rs180781551-?	NR	6E-7	(Native Hawaiian)	1.2508	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
954	chr6	48471990	48471991	rs144310471	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Daytime sleep phenotypes	874 European ancestry individuals	NA	6p12.3		rs144310471-C	NR	9E-6	(daytime napping duration)	0.2414	[0.13-0.35] unit decrease	Affymetrix [7141204] (imputed)	N
956	chr6	48648962	48648963	rs185660548	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	6p12.3	RP1-281E18.1	rs185660548-T	0.0022	7E-6		0.5625	[0.32-0.81] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
956	chr6	48714795	48714796	rs11967676	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Cerebrospinal AB1-42 levels in Alzheimer's disease dementia	190 European ancestry AD dementia cases	NA	6p12.3	RBMXP1, RNU7-65P	rs11967676-G	0.08	9E-8		1.07	[0.7-1.44] unit decrease	Illumina [8344766] (imputed)	N
956	chr6	48733551	48733552	rs2490128	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	6p12.3	Intergenic	rs2490128-T	0.4758	3E-8	(MTAG)	0.0091	[0.0058-0.0124] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
957	chr6	48829141	48829142	rs138941254	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p12.3	NR	rs138941254-A	0.01742	5E-9	(F2)	0.0298	NR unit increase	Illumina [1671387] (imputed)	N
958	chr6	48971281	48971282	rs78015931	33483693	Clements CC	2021-01-22	Mol Psychiatry	Genome-wide association study of patients with a severe major depressive episode treated with electroconvulsive therapy.	Major depressive episode treated with electroconvulsive therapy	2,725 European ancestry cases, 3,290 European ancestry controls	NA	6p12.3	NR	rs78015931-?	NR	9E-7		0.5497	[0.31-0.79]	Illumina [NR] (imputed)	N
958	chr6	48971281	48971282	rs78015931	33483693	Clements CC	2021-01-22	Mol Psychiatry	Genome-wide association study of patients with a severe major depressive episode treated with electroconvulsive therapy.	Major depressive disorder and major depressive episode treated with electroconvulsive therapy	1,796 European ancestry cases, 3,290 European ancestry controls	NA	6p12.3	NR	rs78015931-?	NR	3E-6		0.5406	[0.28-0.8]	Illumina [NR] (imputed)	N
958	chr6	48983440	48983441	rs10948472	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-12p70 levels	8,270 Finnish ancestry individuals	NA	6p12.3	NR	rs10948472-C		2E-6		0.0747	[0.044-0.105] SD units decrease	NR [10700000] (imputed)	N
958	chr6	48986875	48986876	rs34642662	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	6p12.3	Intergenic	rs34642662-A	0.452	4E-8	(MTAG)	0.0099	[0.0064-0.0134] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
959	chr6	49081547	49081548	rs12212993	29921221	Cha S	2018-06-19	BMC Genomics	Identification of five novel genetic loci related to facial morphology by genome-wide association studies.	Nose morphology	5,643 Korean ancestry individuals	up to 1,940 Korean ancestry individuals	6p12.3	MUT	rs12212993-C	0.1	6E-6	(Nasal tip protrusion)	0.022	[NR] unit decrease	Affymetrix [311944]	N
961	chr6	49360016	49360017	rs10948499	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	6p12.3	NR	rs10948499-A	0.352295	2E-10		0.012592	[0.0087-0.0165] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
961	chr6	49382192	49382193	rs9369898	23824729	van Meurs JB	2013-07-03	Am J Clin Nutr	Common genetic loci influencing plasma homocysteine concentrations and their effect on risk of coronary artery disease.	Homocysteine levels	44,147 European ancestry individuals	NA	6p12.3	MUT	rs9369898-A	0.62	2E-10		0.0449	[0.031-0.059] unit increase	Affymetrix, Illumina [2090256] (imputed)	N
961	chr6	49409486	49409487	rs9473555	19744961	Hazra A	2009-09-10	Hum Mol Genet	Genome-wide significant predictors of metabolites in the one-carbon metabolism pathway.	Folate pathway vitamin levels	3,305 European ancestry females, 1,458 European ancestry males	NA	6p12.3	MUT	rs9473555-?	0.35	5E-8	(Plasma Vitamin B12)	0.04	[0.020-0.060] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
962	chr6	49420757	49420758	rs6909128	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	6p12.3		rs6909128-G	NR	2E-9		0.0144	[0.0097-0.0191] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
962	chr6	49459977	49459978	rs2501968	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Ischemic stroke	11,929 European ancestry cases, 472,192 European ancestry controls, 22,664 East Asian ancestry cases, 152,022 East Asian ancestry controls	NA	6p12.3		rs2501968-G	NR	1E-8		0.049	[0.032-0.066] unit decrease	Affymetrix, Illumina [25844498] (imputed)	N
962	chr6	49460151	49460152	rs1471539	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6p12.3	CENPQ	rs1471539-G	0.402036	8E-13		0.015938597	[0.012-0.02] unit increase	Affymetrix [93095623] (imputed)	N
962	chr6	49460151	49460152	rs1471539	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	6p12.3	CENPQ	rs1471539-G	0.402242	1E-10		0.014555141	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
962	chr6	49475542	49475543	rs115534907	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CRISP2	5,368 Icelandic ancestry individuals	NA	6p12.3		rs115534907-T	0.01211	3E-24		0.738235	[0.6-0.88] unit decrease	Illumina [7506463] (imputed)	N
962	chr6	49484200	49484201	rs9381793	34356046	Oluwafemi OO	2021-07-01	Genes (Basel)	Genome-Wide Association Studies of Conotruncal Heart Defects with Normally Related Great Vessels in the United States.	Conotruncal heart defects with normally related great vessels in 22q.11.2 deletion syndrome	913 cases, 559 controls	NA	6p12.3		rs9381793-?	NR	4E-6				Affymetrix [3311160] (imputed)	N
962	chr6	49488481	49488482	rs12190495	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	6p12.3	GLYATL3	rs12190495-A	0.29	1E-179	(X - 24515)	1.073	[1-1.15] unit increase	Illumina [7750367] (imputed)	N
962	chr6	49488907	49488908	rs9473582	20171287	Stein JL	2010-02-17	Neuroimage	Voxelwise genome-wide association study (vGWAS).	Brain structure	740 European ancestry individuals	NA	6p12.3	GLYATL3	rs9473582-?	0.40	8E-7				Illumina [448293]	N
962	chr6	49500280	49500281	rs138417242	34586716	Chen J	2021-09-29	Mol Genet Genomic Med	Heritability and genome-wide association study of blood pressure in Chinese adult twins.	Diastolic blood pressure	137 Chinese ancestry twins	NA	6p12.3		rs138417242-?	NR	6E-6				Illumina [7401356] (imputed)	N
963	chr6	49556792	49556793	rs74745534	26365420	Mbarek H	2015-09-14	Am J Med Genet B Neuropsychiatr Genet	The genetics of alcohol dependence: Twin and SNP-based heritability, and genome-wide association study based on AUDIT scores.	Alcohol dependence	1,374 European ancestry cases and 6,468 European ancestry controls from 7,694 twin pairs	NA	6p12.3	RHAG	rs74745534-T	0.02	1E-6		2.5	[2.15-2.85]	Affymetrix, Illumina, Perlegen [6464174] (imputed)	N
963	chr6	49586903	49586904	rs1296946793	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Hemoglobin A1c levels	437,749 European ancestry individuals	NA	6p12.3		rs1296946793-?	NR	2E-8		0.772463	[0.48-1.06] unit decrease	NR [9800000] (imputed)	N
963	chr6	49589772	49589773	rs9357627	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p12.3	NR	rs9357627-C	0.353	4E-40	(Cysteine-rich secretory protein 2, CRISP2.9282.12.3)	0.34	[0.28-0.4] unit decrease	Affymetrix [10572788] (imputed)	N
963	chr6	49604367	49604368	rs375508949	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Reticulocyte count	437,291 European ancestry individuals	NA	6p12.3		rs375508949-?	NR	1E-41		0.896459	[0.76-1.03] unit increase	NR [9800000] (imputed)	N
963	chr6	49604367	49604368	rs375508949	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean sphered cell volume	437,736 European ancestry individuals	NA	6p12.3		rs375508949-?	NR	4E-45		0.924391	[0.79-1.05] unit decrease	NR [9800000] (imputed)	N
963	chr6	49604367	49604368	rs375508949	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean reticulocyte volume	436,944 European ancestry individuals	NA	6p12.3		rs375508949-?	NR	2E-23		0.670627	[0.54-0.81] unit decrease	NR [9800000] (imputed)	N
963	chr6	49604367	49604368	rs375508949	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	High light scatter reticulocyte count	437,723 European ancestry individuals	NA	6p12.3		rs375508949-?	NR	8E-27		0.710384	[0.57-0.85] unit increase	NR [9800000] (imputed)	N
963	chr6	49604367	49604368	rs375508949	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Hemoglobin A1c levels	437,749 European ancestry individuals	NA	6p12.3		rs375508949-?	NR	3E-37		0.840751	[0.71-0.98] unit decrease	NR [9800000] (imputed)	N
963	chr6	49604367	49604368	rs375508949	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Bilirubin levels	436,055 European ancestry individuals	NA	6p12.3		rs375508949-?	NR	2E-9		0.332175	[0.21-0.46] unit increase	NR [9800000] (imputed)	N
963	chr6	49607110	49607111	rs188522023	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	6p12.3	RHAG	rs188522023-T	0.00154799999999999	4E-13		0.23081018	[0.17-0.29] unit increase	Affymetrix [93095623] (imputed)	N
963	chr6	49607110	49607111	rs188522023	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6p12.3	RHAG	rs188522023-T	0.00154799999999999	5E-13		0.23017268	[0.17-0.29] unit increase	Affymetrix [93095623] (imputed)	N
963	chr6	49607110	49607111	rs188522023	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6p12.3	RHAG	rs188522023-T	0.00154500000000002	4E-28		0.3440981	[0.28-0.41] unit decrease	Affymetrix [93095623] (imputed)	N
963	chr6	49607110	49607111	rs188522023	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	6p12.3	RHAG	rs188522023-T	0.001552	4E-12		0.2198006	[0.16-0.28] unit decrease	Affymetrix [93095623] (imputed)	N
963	chr6	49607110	49607111	rs188522023	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	6p12.3	RHAG	rs188522023-T	0.00153899999999996	1E-14		0.245071	[0.18-0.31] unit increase	Affymetrix [93095623] (imputed)	N
963	chr6	49607110	49607111	rs188522023	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	6p12.3	NR	rs188522023-C	0.998436	9E-13		0.208748	[0.15-0.27] SD unit decrease	Affymetrix, Illumina [50282193] (imputed)	N
963	chr6	49637026	49637027	rs1570063	26718567	Williams SR	2015-12-30	Neurology	Shared genetic susceptibility of vascular-related biomarkers with ischemic and recurrent stroke.	Prothrombin fragments F1+2 levels in ischemic stroke	up to 1,725 European ancestry cases,up to 258 African ancestry cases, up to 117 cases	NA	6p12.3	NR	rs1570063-?	NR	1E-6				Illumina [7500450] (imputed)	N
963	chr6	49654165	49654166	rs802075	26312577	Tan LJ	2015-08-27	J Clin Endocrinol Metab	Bivariate Genome-Wide Association Study Implicates ATP6V1G1 as a Novel Pleiotropic Locus Underlying Osteoporosis and Age at Menarche.	Bone mineral density (hip) and age at menarche	826 Han Chinese ancestry females	1,728 European ancestry females, 709 African American females, 408 Hispanic/Latin American females	6p12.3	CRISP2	rs802075-?		9E-6	(East Asian)			Affymetrix [702413]	N
963	chr6	49663566	49663567	rs36069724	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p12.3	NR	rs36069724-G	0.019	2E-82	(Cysteine-rich secretory protein 2, CRISP2.9282.12.3)	1.64	[1.46-1.82] unit decrease	Affymetrix [10572788] (imputed)	N
964	chr6	49678366	49678367	rs699956	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Paraglaciecola abundance in stool	5,959 Finnish ancestry individuals	NA	6p12.3		rs699956-C	0.0558636	3E-8		0.0672755	[0.044-0.091] unit increase	Illumina [7980478] (imputed)	N
964	chr6	49720876	49720877	rs478328	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CRISP2	5,368 Icelandic ancestry individuals	NA	6p12.3		rs478328-G	0.4987	2E-194		0.456824	[0.43-0.49] unit increase	Illumina [7506463] (imputed)	N
964	chr6	49720876	49720877	rs478328	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p12.3	CRISP2	rs478328-G	0.454	4E-139	(Cysteine-rich secretory protein 2, CRISP2.9282.12.3)	0.57	[0.53-0.61] unit increase	Affymetrix [10572788] (imputed)	N
964	chr6	49721965	49721966	rs586874	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p12.3	CRISP2	rs586874-C	0.5	5E-107	(CRISP2, 9282_12_3)	0.4619296	[0.42-0.5] unit increase	Illumina [> 1000000] (imputed)	N
964	chr6	49740594	49740595	rs186646553	28927378	Qian DC	2017-09-19	BMC Genomics	Genome-wide imaging association study implicates functional activity and glial homeostasis of the caudate in smoking addiction.	Caudate activity during reward	106 individuals	NA	6p12.3	NR	rs186646553-T	0.0220922	9E-6		2.267864	[1.32-3.22] unit increase	Illumina [at least 621854] (imputed)	N
964	chr6	49788295	49788296	rs7773310	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Hepatitis A	2,442 European ancestry cases, 217,137 European ancestry controls	NA	6p12.3	NR	rs7773310-?	NR	2E-6		0.1392	[0.082-0.196] unit decrease	Illumina [at least 560000] (imputed)	N
964	chr6	49791906	49791907	rs13204884	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CRISP2	5,368 Icelandic ancestry individuals	NA	6p12.3		rs13204884-A	0.3519	4E-18		0.151661	[0.12-0.19] unit increase	Illumina [7506463] (imputed)	N
964	chr6	49794776	49794777	rs17663869	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p12.3	NR	rs17663869-T	0.016	7E-21	(Cysteine-rich secretory protein 2, CRISP2.9282.12.3)	0.97	[0.77-1.17] unit decrease	Affymetrix [10572788] (imputed)	N
965	chr6	49871894	49871895	rs113923537	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CRISP2	5,368 Icelandic ancestry individuals	NA	6p12.3		rs113923537-C	0.01308	6E-14		0.524156	[0.39-0.66] unit decrease	Illumina [7506463] (imputed)	N
966	chr6	50045724	50045725	rs185750481	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-hip ratio	1,254 whole genome sequenced European ancestry individuals, 3,071 whole genome sequenced individuals, 29,723 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,053 Mylopotamos (founder/genetic isolate) individuals, 879 Pomak (founder/genetic isolate) individuals	206,053 European ancestry individuals	6p12.3	RP11-397G17.1	rs185750481-T	0.0028	9E-6		0.4917	[0.28-0.71] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
968	chr6	50237320	50237321	rs17737566	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	6p12.3	NR	rs17737566-?	NR	5E-6				Affymetrix [NR]	N
968	chr6	50275257	50275258	rs17665162	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	6p12.3	DEFB112	rs17665162-C	0.058	1E-6	(EA)	0.033	[0.02-0.046] kg/m2 increase	Affymetrix, Illumina [2550021]	N
968	chr6	50275257	50275258	rs17665162	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	6p12.3	DEFB112	rs17665162-C	0.058	1E-6		0.032	[0.019-0.045] kg/m2 increase	Affymetrix, Illumina [2550021]	N
968	chr6	50301099	50301100	rs13212846	28644415	Guenard F	2017-06-23	Nutrients	Genome-Wide Association Study of Dietary Pattern Scores.	Western dietary pattern	141 individuals	NA	6p12.3	DEFB112	rs13212846-?	NR	4E-8				Illumina [2668805]	N
968	chr6	50303028	50303029	rs1845034	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	6p12.3		rs1845034-?	NR	3E-8				NR [~ 8900000] (imputed)	N
968	chr6	50303028	50303029	rs1845034	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	6p12.3		rs1845034-?	NR	3E-9				NR [~ 8900000] (imputed)	N
968	chr6	50322179	50322180	rs76367568	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p12.3	NR	rs76367568-?	NR	4E-6		4.636	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
969	chr6	50352135	50352136	rs6921059	24322204	Winham SJ	2013-12-10	Mol Psychiatry	Genome-wide association study of bipolar disorder accounting for effect of body mass index identifies a new risk allele in TCF7L2.	Bipolar disorder (body mass index interaction)	388 European ancestry cases, 1,020 European ancestry controls	NA	6p12.3	NR	rs6921059-?	NR	4E-6				NR [up to 8466825] (imputed)	N
969	chr6	50361011	50361012	rs6900872	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6p12.3	NR	rs6900872-?	NR	5E-15				Affymetrix [~ 8270000] (imputed)	N
969	chr6	50395141	50395145	rs370332736	30787463	Escala-Garcia M	2019-02-21	Br J Cancer	Genome-wide association study of germline variants and breast cancer-specific mortality.	Breast cancer specific mortality in breast cancer	7,697 European ancestry cases, 88,964 European ancestry controls	NA	6p12.3	NR	rs370332736-?	NR	2E-7		1.1655464	[1.10-1.24]	Affymetrix, Illumina [~ 10400000] (imputed)	N
969	chr6	50401479	50401480	rs200247	28644415	Guenard F	2017-06-23	Nutrients	Genome-Wide Association Study of Dietary Pattern Scores.	Western dietary pattern	141 individuals	NA	6p12.3	TFAP2D	rs200247-?	NR	3E-6				Illumina [2668805]	N
970	chr6	50484489	50484490	rs1342228	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6p12.3	NR	rs1342228-?	NR	9E-9				Affymetrix [~ 8270000] (imputed)	N
970	chr6	50491550	50491551	rs75359967	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	6p12.3		rs75359967-?	NR	2E-10				NR [~ 8900000] (imputed)	N
970	chr6	50506842	50506843	rs73440283	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6p12.3	NR	rs73440283-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
970	chr6	50555590	50555591	rs280291	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels	1,446 Hispanics ancestry individuals	NA	6p12.3		rs280291-?	NR	3E-6		0.16	[0.093-0.227] unit decrease	Affymetrix [NR] (imputed)	N
971	chr6	50596452	50596453	rs1161397	25133637	Scannell Bryan M	2014-08-18	PLoS One	Genome-wide association studies and heritability estimates of body mass index related phenotypes in Bangladeshi adults.	Overweight status	531 Bangladeshi ancestry overweight females, 1,269 Bangladeshi ancestry normal weight females, 338 Bangladeshi ancestry overweight males, 1,106 Bangladeshi ancestry normal weight males	NA	6p12.3	DEFB112, TFAP2D	rs1161397-A	0.105	9E-7	(males)	0.127	[0.076-0.178] unit increase	Illumina [1208102] (imputed)	N
971	chr6	50597377	50597378	rs56068671	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	6p12.3	TFAP2D	rs56068671-T	0.0832	6E-11		0.003	[0.002-0.004] unit increase	Affymetrix [15275733] (imputed)	N
971	chr6	50602211	50602212	rs10948567	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6p12.3	NR	rs10948567-?	NR	8E-14				Affymetrix [~ 8270000] (imputed)	N
971	chr6	50615934	50615935	rs141547796	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	6p12.3	TFAP2D	rs141547796-G	0.917908	1E-17		0.0323956	[0.025-0.04] unit decrease	NR [16516521] (imputed)	N
971	chr6	50615934	50615935	rs141547796	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	6p12.3	NR	rs141547796-A	0.0834	6E-10		0.0123022	[0.0084-0.0162] unit decrease	NR [9732723] (imputed)	N
971	chr6	50615934	50615935	rs141547796	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	6p12.3	NR	rs141547796-A	0.0809	5E-8		0.014821	[0.0095-0.0201] unit increase	NR [9732723] (imputed)	N
971	chr6	50633380	50633381	rs280322	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6p12.3	NR	rs280322-?	NR	5E-15				Affymetrix [~ 8270000] (imputed)	N
971	chr6	50658274	50658275	rs72885809	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6p12.3	NR	rs72885809-?	NR	3E-18				Affymetrix [~ 8270000] (imputed)	N
971	chr6	50683008	50683009	rs78648104	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Attention deficit hyperactivity disorder (MTAG)	at least 19,099 European ancestry cases, at least 34,194 European ancestry controls	2,726 European ancestry cases, 16,299 European ancestry controls	6p12.3	NR	rs78648104-T	0.8827	1E-9		0.12905386	[0.088-0.171] unit increase	NR [NR]	N
971	chr6	50683008	50683009	rs78648104	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	6p12.3	NR	rs78648104-C	NR	2E-9		0.0256	[0.017-0.034] unit decrease	Affymetrix [9000000] (imputed)	N
971	chr6	50683008	50683009	rs78648104	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6p12.3	NR	rs78648104-?	NR	1E-14				Affymetrix [~ 8270000] (imputed)	N
971	chr6	50683008	50683009	rs78648104	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	6p12.3		rs78648104-?	NR	2E-10				NR [~ 8900000] (imputed)	N
971	chr6	50683008	50683009	rs78648104	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6p12.3		rs78648104-T	0.9137	2E-8		0.0141	[0.0092-0.019] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
971	chr6	50683008	50683009	rs78648104	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6p12.3	Intergenic	rs78648104-T	0.9137	6E-11	(MTAG)	0.0153	[0.011-0.02] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
971	chr6	50683008	50683009	rs78648104	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	6p12.3	Intergenic	rs78648104-T	0.9128	2E-10	(MTAG)	0.026	[0.018-0.034] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
971	chr6	50683008	50683009	rs78648104	29273807	Turcot V	2017-12-22	Nat Genet	Protein-altering variants associated with body mass index implicate pathways that control energy intake and expenditure in obesity.	Body mass index	up to 449,889 European ancestry individuals, up to 29,398 South Asian ancestry individuals, up to 27,610 African American individuals, up to 8,839 East Asian individuals, up to 10,772 Hispanic ancestry individuals	up to 196,766 European ancestry individuals	6p12.3	TFAP2D	rs78648104-T	0.9135	1E-10		0.0197	[0.014-0.026] unit increase	Illumina [246328]	N
971	chr6	50683008	50683009	rs78648104	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Systolic blood pressure	140,882 European ancestry individuals	190,318 European ancestry individuals	6p12.3	TFAP2D	rs78648104-T	0.92	1E-8		0.481	[0.32-0.64] unit decrease	Affymetrix [~ 9800000] (imputed)	N
971	chr6	50715406	50715407	rs9349553	29608257	Painter JN	2018-04-02	Cancer Med	Genetic overlap between endometriosis and endometrial cancer: evidence from cross-disease genetic correlation and GWAS meta-analyses.	Endometriosis or endometrial cancer (pleiotropy)	3,194 endometriosis cases, 5,330 non-endometriosis controls, 2,057 endometrial cancer cases, 3,866 non-endometrial cancer controls	NA	6p12.3	TFAP2D	rs9349553-T	NR	5E-6		1.14	[1.08-1.2]	Illumina [462430]	N
972	chr6	50726178	50726179	rs80278479	27622933	Li QS	2016-09-13	Transl Psychiatry	Analysis of 23andMe antidepressant efficacy survey data: implication of circadian rhythm and neuroplasticity in bupropion response.	Response to citalopram or escitalopram in depression	2,963 European ancestry responder cases, 2,005 European ancestry non-responder cases	NA	6p12.3	TFAP2D	rs80278479-?		8E-7		14.492754	[3.88-55.56]	Illumina [~ 12000000] (imputed)	N
972	chr6	50733647	50733648	rs2223471	29178545	Gao C	2017-11-27	Obesity (Silver Spring)	Genome-Wide Study of Subcutaneous and Visceral Adipose Tissue Reveals Novel Sex-Specific Adiposity Loci in Mexican Americans.	Subcutaneous adipose tissue	580 Mexican American female individuals, 403 Mexican American male individuals.	NA	6p12.3	TFAP2D	rs2223471-?	NR	5E-7		1.366636	NR unit decrease	Illumina [7708309] (imputed)	N
972	chr6	50734754	50734755	rs12174225	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Parahippocampal gyrus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	6p12.3	TFAP2D	rs12174225-?		8E-6				Illumina [4322238] (imputed)	N
972	chr6	50757698	50757699	rs9395623	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	6p12.3	TFAP2D, TFAP2B	rs9395623-A	0.3149	4E-13		7.25	[NR] z score increase	Affymetrix, Illumina [~ 11000000] (imputed)	N
972	chr6	50763634	50763635	rs141724389	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6p12.3	NR	rs141724389-?	NR	2E-11				Affymetrix [~ 8270000] (imputed)	N
972	chr6	50774397	50774397	rs201141556	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	6p12.3		rs201141556-CAT	NR	4E-10		0.0215	[0.015-0.028] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
972	chr6	50774397	50774397	rs201141556	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	6p12.3		rs201141556-CAT	NR	4E-9		0.0206	[0.014-0.027] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
972	chr6	50784879	50784880	rs2744475	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	6p12.3	TFAP2B	rs2744475-C	0.7084	2E-20		0.003	[0.0024-0.0036] unit increase	Affymetrix [15275733] (imputed)	N
972	chr6	50784879	50784880	rs2744475	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	223,215 British ancestry individuals	111,610 British ancestry individuals	6p12.3	TFAP2B	rs2744475-G	0.29	7E-17		0.003	[0.0024-0.0036] unit decrease	Affymetrix [15275733] (imputed)	N
972	chr6	50784879	50784880	rs2744475	29381148	Gong J	2017-12-21	Int J Obes (Lond)	Trans-ethnic analysis of metabochip data identifies two new loci associated with BMI.	Body mass index	35,606 African American individuals, 26,048 Hispanic/Latino individuals, 22,466 Asian or Native Hawaiian ancestry individuals, 17,859 European ancestry individuals, 535 Native American individuals	NA	6p12.3	TFAP2B	rs2744475-C		7E-12		0.0056	[0.004-0.0072] unit decrease	Illumina [at least 200000]	N
972	chr6	50785298	50785299	rs3756920	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	6p12.3	NR	rs3756920-?	NR	6E-6		0.0081704	[0.0046-0.0117] unit decrease	Affymetrix [805426] (imputed)	N
972	chr6	50786007	50786008	rs2206271	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	6p12.3		rs2206271-A	0.351203	2E-16		0.0232638	[0.018-0.029] unit increase	Illumina [13479924] (imputed)	N
972	chr6	50786007	50786008	rs2206271	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	163,835 East Asian ancestry individuals	NA	6p12.3		rs2206271-A	0.351354	4E-18		0.0288528	[0.022-0.035] unit increase	Illumina [13479178] (imputed)	N
972	chr6	50786007	50786008	rs2206271	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	6p12.3		rs2206271-?	NR	3E-11				NR [~ 8900000] (imputed)	N
972	chr6	50786007	50786008	rs2206271	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	6p12.3	TFAP2B	rs2206271-A	0.351	3E-18	(Japanese)	0.031	[0.023-0.039] unit increase	Illumina [6108953] (imputed)	N
972	chr6	50786007	50786008	rs2206271	22797727	Okada Y	2012-07-15	Nat Genet	Meta-analysis identifies multiple loci associated with kidney function-related traits in east Asian populations.	Renal function-related traits (BUN)	39,717 East Asian ancestry individuals	17,461 East Asian ancestry individuals	6p12.3	TFAP2B	rs2206271-A	0.32	2E-7		0.0055	[0.0035-0.0075] mg/dl increase	Affymetrix, Illumina [2281523] (imputed)	N
972	chr6	50787356	50787357	rs4628086	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	6p12.3		rs4628086-C	0.897	7E-18		0.015	[0.011-0.019] unit increase	NR [NR] (imputed)	N
972	chr6	50787356	50787357	rs4628086	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	6p12.3	Intergenic	rs4628086-A	0.1067	5E-9	(MTAG)	0.0157	[0.01-0.021] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
972	chr6	50787458	50787459	rs62405419	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Urolithiasis	11,699 East Asian ancestry cases, 167,027 East Asian ancestry controls	NA	6p12.3		rs62405419-T	0.284086828	4E-12		0.109771505	[0.079-0.141] unit increase	Illumina [13429980] (imputed)	N
972	chr6	50787458	50787459	rs62405419	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	6p12.3		rs62405419-T	NR	5E-12		0.0565	[0.04-0.073] unit increase	Affymetrix, Illumina [25845091] (imputed)	N
972	chr6	50787458	50787459	rs62405419	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	6p12.3	TFAP2B	rs62405419-T	0.268	4E-9		1.05	[1.03-1.06]	Affymetrix, Illumina [11800000] (imputed)	N
972	chr6	50788777	50788778	rs3798519	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	6p12.3		rs3798519-C	NR	2E-47		0.0289	[0.025-0.033] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
972	chr6	50788777	50788778	rs3798519	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Urolithiasis	6,223 European ancestry cases, 482,123 European ancestry controls, 11,699 East Asian ancestry cases, 167,027 East Asian ancestry controls	NA	6p12.3		rs3798519-C	NR	2E-15		0.1043	[0.079-0.13] unit increase	Affymetrix, Illumina [25845211] (imputed)	N
972	chr6	50788777	50788778	rs3798519	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	6p12.3		rs3798519-C	NR	3E-10		0.0557	[0.038-0.073] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
972	chr6	50788777	50788778	rs3798519	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	6p12.3		rs3798519-C	NR	2E-13		0.0439	[0.032-0.056] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
972	chr6	50788777	50788778	rs3798519	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	6p12.3		rs3798519-C	NR	3E-52		0.035	[0.03-0.04] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
972	chr6	50788777	50788778	rs3798519	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	6p12.3		rs3798519-C	NR	5E-27		0.0251	[0.021-0.03] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
972	chr6	50788777	50788778	rs3798519	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	6p12.3	NR	rs3798519-C	0.1803	5E-17		0.0495	[0.038-0.061] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
972	chr6	50788777	50788778	rs3798519	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	6p12.3	NR	rs3798519-C	0.2086	6E-24		0.0474	[0.038-0.057] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
972	chr6	50788777	50788778	rs3798519	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	6p12.3	TFAP2B	rs3798519-A	0.820086	8E-43		0.0250116	[0.021-0.029] unit decrease	Affymetrix [12370749]	N
972	chr6	50788777	50788778	rs3798519	30975718	Tanikawa C	2019-04-11	J Am Soc Nephrol	Novel Risk Loci Identified in a Genome-Wide Association Study of Urolithiasis in a Japanese Population.	Urolithiasis	11,130 Japanese ancestry cases, 187,639 Japanese ancestry controls	2,289 Japanese ancestry cases, 3,817 Japanese ancestry controls	6p12.3	TFAP2B	rs3798519-C	0.283	1E-15		1.1235955	[NR]	Illumina [6603247] (imputed)	N
972	chr6	50788777	50788778	rs3798519	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	6p12.3	TFAP2B	rs3798519-C	0.1844	3E-12		1.06	[1.04-1.08]	Affymetrix, Illumina [~ 27000000] (imputed)	N
972	chr6	50788777	50788778	rs3798519	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Blood urea nitrogen levels	139,818 Japanese ancestry individuals	NA	6p12.3	TFAP2B	rs3798519-?	NR	4E-15		0.03085	[0.023-0.039] unit increase novel	Illumina [6108953] (imputed)	N
972	chr6	50789450	50789451	rs2076309	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	6p12.3	TFAP2D, TFAP2B, PKHD1	rs2076309-?		4E-37				Affymetrix, Illumina [NR] (imputed)	N
972	chr6	50790632	50790633	rs6930924	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	6p12.3	NR	rs6930924-G	0.126243	5E-8		0.05158437	[0.033-0.07] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
972	chr6	50790632	50790633	rs6930924	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	6p12.3	Intergenic	rs6930924-A	0.1037	4E-8		0.0257	[0.016-0.035] unit increase	Affymetrix, Illumina [10100000] (imputed)	N
972	chr6	50790641	50790642	rs2857482	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Nevus count or cutaneous melanoma	36,760 European ancestry cutaneous melanoma cases, 375,188 European ancestry controls, 12,930 European ancestry individuals, 52,847 individuals	NA	6p12.3	TFAP2B	rs2857482-C	0.892809	3E-10				Affymetrix, Illumina [NR] (imputed)	N
972	chr6	50791605	50791609	rs370476693	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	6p12.3		rs370476693-C	NR	2E-8		0.0104	[0.0067-0.0141] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
972	chr6	50791605	50791609	rs370476693	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	6p12.3		rs370476693-C	NR	2E-8		0.0096	[0.0063-0.0129] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
972	chr6	50791639	50791640	rs2076308	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	148,767 East Asian ancestry individuals	NA	6p12.3		rs2076308-C	0.315906	2E-16		0.0296256	[0.023-0.037] unit increase	Illumina [13478792] (imputed)	N
972	chr6	50791639	50791640	rs2076308	33045005	Vogelezang S	2020-10-12	PLoS Genet	Novel loci for childhood body mass index and shared heritability with adult cardiometabolic traits.	Childhood body mass index	39,620 European ancestry individuals	NA	6p12.3	TFAP2B	rs2076308-C	0.19	2E-12		0.07	[0.05-0.09] unit increase	Affymetrix, Illumina [8227808] (imputed)	N
972	chr6	50796633	50796634	rs760900	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	6p12.3		rs760900-?	NR	2E-8				NR [~ 8900000] (imputed)	N
972	chr6	50798525	50798526	rs2206277	31504550	Bradfield JP	2019-07-05	Hum Mol Genet	A Trans-ancestral Meta-Analysis of Genome-Wide Association Studies Reveals Loci Associated with Childhood Obesity.	Childhood obesity	8,613 European ancestry cases, 3,213 African American cases, 69 Moroccan ancestry cases, 986 Hispanic/Latino cases, 124 East Asian ancestry cases, 12,696 European ancestry controls, 1,392 African American controls, 64 Moroccan ancestry controls, 993 Hispanic/Latino controls, 454 East Asian ancestry controls	NA	6p12.3	NR	rs2206277-T	NR	3E-8	(EA)	0.1352	[0.087-0.183] unit increase	Affymetrix, Illumina [up to 15123508] (imputed)	N
972	chr6	50798525	50798526	rs2206277	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Body mass index	17,127 African American individuals, 21,955 Hispanic/Latino individuals, 4,647 Asian ancestry individuals, 3,936 Native Hawaiian ancestry individuals, 645 Native American ancestry individuals, 1,025 individuals	NA	6p12.3	NR	rs2206277-?	NR	3E-6		0.03534789	[0.021-0.05] unit increase	Illumina [32062178] (imputed)	N
972	chr6	50798525	50798526	rs2206277	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	6p12.3	NA	rs2206277-T	0.1557	2E-83		0.0408	[0.037-0.045] unit increase	NR [~ 27400000] (imputed)	N
972	chr6	50798525	50798526	rs2206277	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	6p12.3	NA	rs2206277-T	0.1557	2E-83		0.0408	[0.037-0.045] unit increase	NR [~ 27400000] (imputed)	N
972	chr6	50798525	50798526	rs2206277	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	6p12.3	TFAP2B	rs2206277-C	0.2	1E-38		0.336	[0.33-0.34] unit increase	Illumina [6108953] (imputed)	N
972	chr6	50798525	50798526	rs2206277	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	6p12.3	NR	rs2206277-T	0.185933787947696	7E-32		0.041263442	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
972	chr6	50798525	50798526	rs2206277	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p12.3	TFAP2B	rs2206277-T	0.1859	9E-10	(EA, men)	0.0391	[0.027-0.052] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
972	chr6	50798525	50798526	rs2206277	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p12.3	TFAP2B	rs2206277-T	0.1859	7E-11	(EA,women)	0.0393	[0.028-0.051] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
972	chr6	50798525	50798526	rs2206277	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p12.3	TFAP2B	rs2206277-T	0.1859	3E-17	(EA)	0.0391	[0.03-0.048] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
972	chr6	50798525	50798526	rs2206277	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry  class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry class I obese individuals, 5,476 European ancestry class II obese individuals, 1,162 European ancestry class III obese individuals, up to 39,294 European ancestry controls	6p12.3	TFAP2B	rs2206277-T	0.18	7E-16	(Overweight)	1.07	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
972	chr6	50798525	50798526	rs2206277	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry  class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry class I obese individuals, 5,476 European ancestry class II obese individuals, 1,162 European ancestry class III obese individuals, up to 39,294 European ancestry controls	6p12.3	TFAP2B	rs2206277-T	0.18	5E-22	(Obesity class I)	1.12	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
972	chr6	50798525	50798526	rs2206277	21386085	Kraja AT	2011-03-08	Diabetes	A bivariate genome-wide approach to metabolic syndrome: STAMPEED consortium.	Metabolic syndrome (bivariate traits)	22,161 European ancestry individuals	NA	6p12.3	TFAP2B	rs2206277-A	NR	1E-7	(WC-GLUC)	0.17	[0.11-0.23] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
972	chr6	50803049	50803050	rs987237	33491310	Warner ET	2021-02-01	Obesity (Silver Spring)	A Genome-Wide Association Study of Childhood Body Fatness.	Childhood body fatness	34,401 European ancestry individuals	NA	6p12.3	NR	rs987237-?	NR	8E-7		8.637	NR z score decrease	Affymetrix, Illumina [10031233] (imputed)	N
972	chr6	50803049	50803050	rs987237	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Waist circumference variance	347,158 European ancestry individuals	NA	6p12.3	TFAP2B	rs987237-?	NR	5E-12				NR [5554549] (imputed)	N
972	chr6	50803049	50803050	rs987237	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Waist circumference	347,158 European ancestry individuals	NA	6p12.3	TFAP2B	rs987237-?	NR	1E-34				NR [5554549] (imputed)	N
972	chr6	50803049	50803050	rs987237	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Body mass index variance	346,393 European ancestry individuals	NA	6p12.3	TFAP2B	rs987237-?	NR	2E-16				NR [5554549] (imputed)	N
972	chr6	50803049	50803050	rs987237	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Body mass index	346,393 European ancestry individuals	NA	6p12.3	TFAP2B	rs987237-?	NR	8E-43				NR [5554549] (imputed)	N
972	chr6	50803049	50803050	rs987237	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	6p12.3	NA	rs987237-A	0.844	1E-19		0.02	[0.016-0.024] unit decrease	NR [~ 27400000] (imputed)	N
972	chr6	50803049	50803050	rs987237	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	316,772 European ancestry male individuals	NA	6p12.3	NR	rs987237-A	0.844	1E-19		0.02	[0.016-0.024] unit decrease	NR [~ 27400000] (imputed)	N
972	chr6	50803049	50803050	rs987237	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6p12.3	TFAP2B	rs987237-G	0.18620000000000003	6E-13	(EA)	0.0386	[0.028-0.049] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
972	chr6	50803049	50803050	rs987237	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6p12.3	TFAP2B	rs987237-G	0.1856	7E-10	(EA,women)	0.042	[0.029-0.055] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
972	chr6	50803049	50803050	rs987237	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6p12.3	TFAP2B	rs987237-G	0.18420000000000003	7E-14		0.0386	[0.028-0.049] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
972	chr6	50803049	50803050	rs987237	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6p12.3	TFAP2B	rs987237-G	0.18259999999999998	3E-11	(women)	0.0429	[0.03-0.055] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
972	chr6	50803049	50803050	rs987237	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p12.3	TFAP2B	rs987237-?	NR	7E-12	(women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
972	chr6	50803049	50803050	rs987237	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p12.3	TFAP2B	rs987237-?	NR	6E-10	(EA, women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
972	chr6	50803049	50803050	rs987237	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p12.3	TFAP2B	rs987237-?	NR	4E-15	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
972	chr6	50803049	50803050	rs987237	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p12.3	TFAP2B	rs987237-?	NR	1E-7	(EA, men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
972	chr6	50803049	50803050	rs987237	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p12.3	TFAP2B	rs987237-G	0.18620000000000003	7E-10	(EA, women)	0.0381	[0.026-0.05] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
972	chr6	50803049	50803050	rs987237	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p12.3	TFAP2B	rs987237-G	0.18620000000000003	3E-15	(EA)	0.0383	[0.029-0.048] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
972	chr6	50803049	50803050	rs987237	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p12.3	TFAP2B	rs987237-G	0.18420000000000003	3E-11	(women)	0.0391	[0.028-0.051] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
972	chr6	50803049	50803050	rs987237	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p12.3	TFAP2B	rs987237-G	0.18420000000000003	2E-16		0.0378	[0.029-0.047] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
972	chr6	50803049	50803050	rs987237	26604143	Felix JF	2015-11-24	Hum Mol Genet	Genome-wide association analysis identifies three new susceptibility loci for childhood body mass index.	Childhood body mass index	34,744 European ancestry children	11,313 European ancestry children	6p12.3	TFAP2B	rs987237-G	0.19	2E-12		0.062	[0.044-0.08] unit increase	Affymetrix, Illumina [2499691] (imputed)	N
972	chr6	50803049	50803050	rs987237	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Body mass index	7,962 European ancestry high body mass index individuals, 8,106 European ancestry low body mass index individuals	4,900 European ancestry high body mass index individuals, 4,891 European ancestry low body mass index individuals	6p12.3	TFAP2B	rs987237-G	0.18	2E-11		1.2	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
972	chr6	50803049	50803050	rs987237	20935630	Speliotes EK	2010-10-10	Nat Genet	Association analyses of 249,796 individuals reveal 18 new loci associated with body mass index.	Body mass index	Up to 123,865 European ancestry individuals	Up to 125,931 European ancestry individuals	6p12.3	TFAP2B	rs987237-G	0.18	3E-20		0.13	[0.07-0.19] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2800000] (imputed)	N
972	chr6	50803049	50803050	rs987237	19557161	Lindgren CM	2009-06-26	PLoS Genet	Genome-wide association scan meta-analysis identifies three Loci influencing adiposity and fat distribution.	Adiposity	38,580 European ancestry individuals	Up to 102,064 European ancestry individuals	6p12.3	TFAP2B	rs987237-G	0.164	2E-11	(WC)	0.04	[0.03-0.05] z-score unit increase	Affymetrix, Illumina [2573738] (imputed)	N
972	chr6	50804520	50804521	rs2817399	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fruit consumption	335,576 European ancestry individuals	NA	6p12.3	TFAP2D, TFAP2B, PKHD1	rs2817399-?	NR	7E-15		0.0189811	[0.014-0.024] unit increase	Affymetrix [25921788] (imputed)	N
972	chr6	50809277	50809278	rs4715207	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 29,0641 European ancestry controls	NA	6p12.3	TFAP2B	rs4715207-T	0.179898	2E-9		0.09093272	[0.061-0.121] unit increase	Affymetrix [7288503] (imputed)	N
972	chr6	50809277	50809278	rs4715207	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Type 2 diabetes	approximately 459,000 European ancestry individuals	NA	6p12.3		rs4715207-?	NR	1E-11				NR [~ 8900000] (imputed)	N
972	chr6	50809719	50809720	rs2207136	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Myopia	106,086 European ancestry cases, 85,757 European ancestry controls	NA	6p12.3	TFAP2B	rs2207136-?	NR	2E-11		1.051	[1.036-1.066]	Illumina [13762925] (imputed)	N
972	chr6	50812905	50812906	rs2817419	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p12.3	NR	rs2817419-A	0.742518	6E-13				Affymetrix, Illumina [24653286] (imputed)	N
972	chr6	50812905	50812906	rs2817419	31840077	Couto Alves A	2019-09-04	Sci Adv	GWAS on longitudinal growth traits reveals different genetic factors influencing infant, child, and adult BMI.	Age at adiposity rebound	6,051 European ancestry children	12,256 European ancestry children	6p12.3	TFAP2B	rs2817419-A	0.76	4E-11		0.08	[0.06-0.1] unit decrease	Affymetrix, Illumina [up to 2543888] (imputed)	N
972	chr6	50816717	50816718	rs55648125	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Bipolar disorder (MTAG)	1,450,972 European ancestry individuals	NA			rs55648125-?	NR	3E-8				NR [2625067]	N
972	chr6	50816717	50816718	rs55648125	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Bipolar disorder (MTAG)	at least 20,352 European ancestry cases, at least 31,358 European ancestry controls	NA		NR	rs55648125-A	0.9016	1E-8		0.09884386	[0.065-0.133] unit decrease	NR [NR]	N
972	chr6	50816717	50816718	rs55648125	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA		TFAP2B, TFAP2D	rs55648125-?		9E-9				NR [6786993] (imputed)	N
972	chr6	50816717	50816718	rs55648125	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls		TFAP2D, TFAP2B	rs55648125-G	0.10499999999999998	8E-8		1.1005337		NR [9372253] (imputed)	N
972	chr6	50816717	50816718	rs55648125	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar I disorder	14,879 European ancestry cases, 31,358 European ancestry controls	NA		TFAP2D, TFAP2B	rs55648125-G	0.10499999999999998	6E-7		1.1280571	[NR]	NR [9372253] (imputed)	N
972	chr6	50816886	50816887	rs72892910	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Sex hormone-binding globulin levels	389,354 European ancestry individuals	NA	6p12.3		rs72892910-T	0.17	8E-6		0.011	nmol/L decrease	NR [NR] (imputed)	N
972	chr6	50816886	50816887	rs72892910	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	6p12.3		rs72892910-T	0.17	5E-16				NR [NR] (imputed)	N
972	chr6	50816886	50816887	rs72892910	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	6p12.3		rs72892910-T	0.17	2E-32		0.023	% increase	NR [NR] (imputed)	N
972	chr6	50816886	50816887	rs72892910	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		6p12.3	TFAP2B	rs72892910-G	0.827755	6E-44		0.0252844	[0.022-0.029] unit decrease	Affymetrix [12370749]	N
972	chr6	50816886	50816887	rs72892910	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6p12.3	NR	rs72892910-?	NR	2E-52				Affymetrix [~ 8270000] (imputed)	N
972	chr6	50816886	50816887	rs72892910	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	6p12.3	NR	rs72892910-T	0.1698	7E-28		0.0361555	[0.03-0.043] unit increase	Affymetrix [10549349] (imputed)	N
972	chr6	50816886	50816887	rs72892910	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	6p12.3		rs72892910-?	NR	3E-53				NR [~ 8900000] (imputed)	N
972	chr6	50816886	50816887	rs72892910	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	6p12.3	TFAP2B	rs72892910-T	0.172394287519017	6E-11		0.0648	[0.045-0.084] unit increase	NR [5035015] (imputed)	N
972	chr6	50817747	50817748	rs57988840	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	6p12.3		rs57988840-A	0.12	8E-9		5.76	z score increase	Affymetrix [9061022] (imputed)	N
972	chr6	50817747	50817748	rs57988840	30677029	Riveros-McKay F	2019-01-24	PLoS Genet	Genetic architecture of human thinness compared to severe obesity.	Obese vs. thin	1,456 British ancestry obese children, 1,471 European ancestry thin adults	up to 7,526 British ancestry obese individuals, 7,962 obese individuals, up to 3,532 British ancestry thin individuals, 8,106 thin individuals	6p12.3	TFAP2B	rs57988840-T	0.888093	4E-7		1.22	[1.13-1.31]	Illumina [41266535] (imputed)	N
972	chr6	50818238	50818239	rs2746646	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	6p12.3	NR	rs2746646-C		3E-15		0.09	[0.07-0.11] unit increase	NR [NR]	N
972	chr6	50820939	50820940	rs2635727	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6p12.3	NR	rs2635727-?	NR	1E-35				Affymetrix [~ 8270000] (imputed)	N
972	chr6	50820939	50820940	rs2635727	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	6p12.3	NR	rs2635727-T	0.2444	6E-12		0.02057605	[0.015-0.026] unit decrease	Affymetrix [10549349] (imputed)	N
972	chr6	50820939	50820940	rs2635727	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	6p12.3	TFAP2B	rs2635727-T	0.247725	3E-9	(males)	0.01885	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
972	chr6	50820939	50820940	rs2635727	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	6p12.3	TFAP2B	rs2635727-T	0.247725	1E-16		0.0199	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
972	chr6	50820939	50820940	rs2635727	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	6p12.3	TFAP2B	rs2635727-T	0.247725	1E-10	(females)	0.021	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
972	chr6	50829470	50829471	rs4715208	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	6p12.3	NR	rs4715208-A	0.2494	3E-8				NR [9056863] (imputed)	N
972	chr6	50829470	50829471	rs4715208	33128006	Timmins IR	2020-10-30	Commun Biol	Genome-wide association study of self-reported walking pace suggests beneficial effects of brisk walking on health and survival.	Walking pace	450,967 European ancestry individuals	NA	6p12.3	TFAP2B	rs4715208-A	NR	1E-9		0.00893744	[0.0061-0.0118] unit increase	Affymetrix [10061374] (imputed)	N
972	chr6	50829470	50829471	rs4715208	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-hip ratio	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p12.3	TFAP2B	rs4715208-A	0.2598	8E-7	(EA)	0.0186	[0.011-0.026] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
972	chr6	50829470	50829471	rs4715208	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-hip ratio	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p12.3	TFAP2B	rs4715208-A	0.2598	1E-8	(EA, men)	0.0313	[0.021-0.042] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
972	chr6	50833083	50833084	rs4711961	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	6p12.3	NR	rs4711961-?	NR	7E-9		0.16303	[0.11-0.22] unit increase	Affymetrix [7794483] (imputed)	N
972	chr6	50833083	50833084	rs4711961	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	6p12.3	NR	rs4711961-?	NR	4E-6	(male)	0.15923	[0.091-0.227] unit increase	Affymetrix [7794483] (imputed)	N
972	chr6	50834156	50834157	rs9473924	24861553	Wen W	2014-05-26	Hum Mol Genet	Meta-analysis of genome-wide association studies in East Asian-ancestry populations identifies four new loci for body mass index.	Body mass index	82,438 East Asian ancestry individuals, 4,301 South East Asian ancestry individuals	Up to 47,352 East Asian ancestry individuals	6p12.3	TFAP2B	rs9473924-T	0.29	4E-7		0.0308	[0.019-0.043] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
972	chr6	50836278	50836279	rs734597	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	6p12.3		rs734597-A	0.1696	2E-8		0.016	[0.01-0.022] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
972	chr6	50836278	50836279	rs734597	21935397	Paternoster L	2011-09-15	PLoS One	Genome-wide population-based association study of extremely overweight young adults--the GOYA study.	Obesity (extreme)	2,633 European ancestry extremely obese adult cases, 2,740 European ancestry controls	29,181 European ancestry individuals	6p12.3	TFAP2B	rs734597-A	NR	3E-8				Illumina [545349]	N
972	chr6	50845489	50845490	rs2207139	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	6p12.3	NR	rs2207139-?	NR	2E-7	(male)	0.24103	[0.15-0.33] unit increase	Affymetrix [7794483] (imputed)	N
972	chr6	50845489	50845490	rs2207139	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	6p12.3	NR	rs2207139-?	NR	2E-6	(female)	0.15234	[0.09-0.215] unit increase	Affymetrix [7794483] (imputed)	N
972	chr6	50845489	50845490	rs2207139	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	6p12.3	NR	rs2207139-?	NR	1E-11		0.19907	[0.14-0.26] unit increase	Affymetrix [7794483] (imputed)	N
972	chr6	50845489	50845490	rs2207139	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	6p12.3	TFAP2B	rs2207139-A	0.8269	4E-21				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
972	chr6	50845489	50845490	rs2207139	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	6p12.3	TFAP2B	rs2207139-A	0.8269	2E-9	(men)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
972	chr6	50845489	50845490	rs2207139	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	6p12.3	TFAP2B	rs2207139-A	0.8269	2E-13	(women)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
972	chr6	50845489	50845490	rs2207139	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in smokers	19,883 European ancestry women, up to 16,928 European ancestry men, up to 973 European ancestry individuals, 1,701 African American/Afro-Caribbean ancestry women, 903 African American/Afro-Caribbean ancestry men, 10 Indian Asian ancestry women, 957 Indian Asian ancestry men, 267 Filipino ancestry women, 475 Hispanic/Latino ancestry women, 446 Hispanic/Latino ancestry men	5,485 European ancestry women, 6,471 European ancestry men, 13,416 European ancestry individuals, 253 African American/Afro-Caribbean ancestry women, 208 African American/Afro-Caribbean ancestry men	6p12.3	TFAP2B	rs2207139-A	0.8269	3E-10		0.0579	[0.04-0.076] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
972	chr6	50845489	50845490	rs2207139	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in smokers	19,883 European ancestry women, up to 16,928 European ancestry men, up to 973 European ancestry individuals, 1,701 African American/Afro-Caribbean ancestry women, 903 African American/Afro-Caribbean ancestry men, 10 Indian Asian ancestry women, 957 Indian Asian ancestry men, 267 Filipino ancestry women, 475 Hispanic/Latino ancestry women, 446 Hispanic/Latino ancestry men	5,485 European ancestry women, 6,471 European ancestry men, 13,416 European ancestry individuals, 253 African American/Afro-Caribbean ancestry women, 208 African American/Afro-Caribbean ancestry men	6p12.3	TFAP2B	rs2207139-A	0.8269	2E-6	(women)	0.0606	[0.036-0.085] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
972	chr6	50845489	50845490	rs2207139	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in non-smokers	77,279 European ancestry women, 47,280 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	6p12.3	TFAP2B	rs2207139-A	0.8269	3E-9	(women)	0.0376	[0.025-0.05] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
972	chr6	50845489	50845490	rs2207139	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in non-smokers	77,279 European ancestry women, 47,280 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	6p12.3	TFAP2B	rs2207139-A	0.8269	2E-13		0.0361	[0.026-0.046] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
972	chr6	50845489	50845490	rs2207139	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in non-smokers	77,279 European ancestry women, 47,280 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	6p12.3	TFAP2B	rs2207139-A	0.8269	1E-6	(men)	0.0342	[0.02-0.048] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
972	chr6	50845489	50845490	rs2207139	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	6p12.3	TFAP2B	rs2207139-A	0.8269	9E-19		0.038	[0.03-0.046] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
972	chr6	50845489	50845490	rs2207139	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	6p12.3	TFAP2B	rs2207139-A	0.8269	4E-9	(men)	0.0367	[0.024-0.049] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
972	chr6	50845489	50845490	rs2207139	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	6p12.3	TFAP2B	rs2207139-A	0.8269	4E-12	(women)	0.0392	[0.028-0.05] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
972	chr6	50845489	50845490	rs2207139	26961502	Wood AR	2016-03-10	Diabetologia	Variants in the FTO and CDKAL1 loci have recessive effects on risk of obesity and type 2 diabetes, respectively.	Body mass index	29,925 British ancestry cases, 89,763 British ancestry controls	NA	6p12.3	TFAP2B	rs2207139-G	NR	2E-12	(additive model)	0.039	[0.029-0.049] unit increase	NR [9288881] (imputed)	N
972	chr6	50845489	50845490	rs2207139	26604143	Felix JF	2015-11-24	Hum Mol Genet	Genome-wide association analysis identifies three new susceptibility loci for childhood body mass index.	Childhood body mass index	34,744 European ancestry children	11,313 European ancestry children	6p12.3	NR	rs2207139-G	NR	7E-11				Affymetrix, Illumina [2499691] (imputed)	N
972	chr6	50845489	50845490	rs2207139	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	6p12.3	TFAP2B	rs2207139-G	0.178	2E-16	(EA, men)	0.044	[0.034-0.054] kg/m2 increase	Affymetrix, Illumina [2550021]	N
972	chr6	50845489	50845490	rs2207139	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	6p12.3	TFAP2B	rs2207139-G	0.177	4E-29	(EA)	0.045	[0.037-0.053] kg/m2 increase	Affymetrix, Illumina [2550021]	N
972	chr6	50845489	50845490	rs2207139	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	6p12.3	TFAP2B	rs2207139-G	0.177	2E-19	(EA, women)	0.047	[0.036-0.057] kg/m2 increase	Affymetrix, Illumina [2550021]	N
972	chr6	50845489	50845490	rs2207139	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	6p12.3	TFAP2B	rs2207139-G	0.176	8E-31		0.045	[0.037-0.052] kg/m2 increase	Affymetrix, Illumina [2550021]	N
972	chr6	50845489	50845490	rs2207139	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry  class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry class I obese individuals, 5,476 European ancestry class II obese individuals, 1,162 European ancestry class III obese individuals, up to 39,294 European ancestry controls	6p12.3	TFAP2B	rs2207139-G	0.18	3E-19	(Obesity class II)	1.2	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
972	chr6	50852758	50852759	rs143376495	26503814	Hardin M	2016-10-27	Pharmacogenomics J	A genome-wide analysis of the response to inhaled ?2-agonists in chronic obstructive pulmonary disease.	Response to bronchodilator in chronic obstructive pulmonary disease (change in FEV1)	5,766 European ancestry cases, 811 African American cases	NA	6p12.3	TFAP2B	rs143376495-G	0.99	1E-7	(BDRBASE, AA)	19.47	[12.36-26.58] unit decrease	Illumina [NR] (imputed)	N
973	chr6	50858234	50858235	rs72891717	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Hip circumference variance	346,781 European ancestry individuals	NA	6p12.3	TFAP2B	rs72891717-?	NR	6E-10				NR [5554549] (imputed)	N
973	chr6	50858234	50858235	rs72891717	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Hip circumference	346,781 European ancestry individuals	NA	6p12.3	TFAP2B	rs72891717-?	NR	1E-36				NR [5554549] (imputed)	N
973	chr6	50865819	50865820	rs943005	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	6p12.3	NA	rs943005-T	0.1494	1E-81		0.041	[0.037-0.045] unit increase	NR [~ 27400000] (imputed)	N
973	chr6	50865819	50865820	rs943005	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6p12.3	FTHP1, TFAP2B	rs943005-T	0.1777	5E-6	(men)	0.0358	[0.02-0.051] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
973	chr6	50865819	50865820	rs943005	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p12.3	FTHP1, TFAP2B	rs943005-?	NR	4E-8	(men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
973	chr6	50865819	50865820	rs943005	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p12.3	FTHP1, TFAP2B	rs943005-T	0.175	1E-8	(men)	0.0389	[0.026-0.052] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
973	chr6	50865819	50865820	rs943005	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p12.3	TFAP2B	rs943005-T	0.1765	7E-19	(EA)	0.0388	[0.03-0.047] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
973	chr6	50865819	50865820	rs943005	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p12.3	TFAP2B	rs943005-T	0.1765	1E-11	(EA, men)	0.0412	[0.029-0.053] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
973	chr6	50865819	50865820	rs943005	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p12.3	TFAP2B	rs943005-T	0.1765	1E-10	(EA, women)	0.0371	[0.026-0.048] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
973	chr6	50883819	50883820	rs78172382	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	6p12.3	NA	rs78172382-T		5E-10		0.0184403	[0.013-0.024] unit increase	Illumina [13288253] (imputed)	N
973	chr6	50897250	50897251	rs4715210	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	6p12.3	NR	rs4715210-C	NR	2E-34		0.04	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
973	chr6	50897250	50897251	rs4715210	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically inactive individuals	561 African American women, 352 Filipino ancestry women, 725 Indian ancestry women, 19,366 European ancestry women, 251 African American men, 4,654 Indian ancestry men, 11,727 European ancestry men, 959 European ancestry individuals	1,437 African American women, 5,184 European ancestry women, 64 African American men, 5,416 European ancestry men	6p12.3	FTHP1, TFAP2B	rs4715210-T	0.1827	4E-6		0.0452	[0.026-0.064] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
973	chr6	50897250	50897251	rs4715210	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p12.3	FTHP1, TFAP2B	rs4715210-?	NR	6E-17				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
973	chr6	50897250	50897251	rs4715210	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p12.3	FTHP1, TFAP2B	rs4715210-T	0.1763	2E-8	(EA, men)	0.0411	[0.027-0.055] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
973	chr6	50904691	50904692	rs571503	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	6p12.3		rs571503-A	0.47	2E-13		7.38	z score increase	Affymetrix [9061022] (imputed)	N
973	chr6	50909197	50909198	rs9367420	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	6p12.3	NR	rs9367420-?	NR	7E-6		0.007971	[0.0045-0.0115] unit decrease	Affymetrix [805426] (imputed)	N
973	chr6	50914347	50914348	rs72887147	28430825	Ng MCY	2017-04-21	PLoS Genet	Discovery and fine-mapping of adiposity loci using high density imputation of genome-wide association studies in individuals of African ancestry: African Ancestry Anthropometry Genetics Consortium.	Body mass index (adult)	16,559 African ancestry men, 26,193 African ancestry women	2,458 African ancestry men, 7,685 African ancestry women, 152,893 European ancestry men, 171,977 European ancestry women	6p12.3	TFAP2B	rs72887147-T	0.097	2E-6	(AA)	0.059	[0.034-0.084] unit increase	Affymetrix, Illumina [17972087] (imputed)	N
973	chr6	50921601	50921602	rs6904450	33649486	Hardcastle AJ	2021-03-01	Commun Biol	A multi-ethnic genome-wide association study implicates collagen matrix integrity and cell differentiation pathways in keratoconus.	Keratoconus	2,116 European ancestry cases, 24,626 European ancestry controls	1, 389 European ancestry cases, 79,727 European ancestry controls, 759 South Asian ancestry cases, 8,009 South Asian ancestry controls, 405 African ancestry cases, 4,185 African ancestry controls	6p12.3	TFAP2B, PKHD1	rs6904450-A	NR	6E-11		0.189	[0.13-0.25] unit decrease	Affymetrix [7701190] (imputed)	N
973	chr6	50921601	50921602	rs6904450	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	6p12.3		rs6904450-?	NR	3E-9				NR [~ 8900000] (imputed)	N
973	chr6	50923540	50923541	rs6927514	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	6p12.3		rs6927514-?	NR	5E-9				NR [~ 8900000] (imputed)	N
973	chr6	50923636	50923637	rs9395644	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	6p12.3	TFAP2B	rs9395644-A	0.8976	1E-8		0.020468287	[0.013-0.027] unit increase	Affymetrix [11514654] (imputed)	N
973	chr6	50930040	50930041	rs6925748	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	6p12.3	NR	rs6925748-G	0.420535700647532	1E-11		0.006308424	[0.0045-0.0081] unit increase	NR [NR]	N
973	chr6	50930040	50930041	rs6925748	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	6p12.3	NR	rs6925748-G	0.420535700647532	1E-9		0.007704765	[0.0052-0.0102] unit increase	NR [NR]	N
973	chr6	50930040	50930041	rs6925748	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	6p12.3	NR	rs6925748-G	0.420535700647532	3E-11		0.009917812	[0.007-0.0128] unit increase	NR [NR]	N
973	chr6	50930040	50930041	rs6925748	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	6p12.3	NR	rs6925748-G	0.420535700647532	1E-9		0.008168995	[0.0055-0.0108] unit increase	NR [NR]	N
973	chr6	50930040	50930041	rs6925748	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	6p12.3	NR	rs6925748-G	0.420535700647532	3E-11		0.006328411	[0.0045-0.0082] unit increase	NR [NR]	N
973	chr6	50936577	50936578	rs143411887	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6p12.3	NR	rs143411887-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
973	chr6	50938246	50938247	rs3857599	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	6p12.3	TFAP2B	rs3857599-A	0.163118	1E-8		0.046682246	[0.031-0.063] unit increase	Affymetrix [7288503] (imputed)	N
973	chr6	50938246	50938247	rs3857599	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	6p12.3	TFAP2B, PKHD1	rs3857599-A	0.1659	2E-9		1.032724		Affymetrix [11880941] (imputed)	N
973	chr6	50942950	50942951	rs75840479	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p12.3	NR	rs75840479-?	NR	7E-6		4.481	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
973	chr6	50946520	50946521	rs4141973	31754094	Pisanu C	2019-11-21	Transl Psychiatry	Evidence that genes involved in hedgehog signaling are associated with both bipolar disorder and high BMI.	Bipolar disorder or body mass index	20,352 European ancestry bipolar disorder cases, 31,358 European ancestry controls, 322,154 European ancestry individuals with BMI data.	NA	6p12.3	Intergenic	rs4141973-T	NR	2E-9		0.029	[0.019-0.039] unit increase	Illumina [2013566] (imputed)	N
973	chr6	50947294	50947295	rs4082052	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	6p12.3		rs4082052-C	0.350726	2E-9		0.013725505	[0.0093-0.0182] unit decrease	Affymetrix [93095623] (imputed)	N
973	chr6	50956563	50956564	rs546979	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6p12.3	NR	rs546979-?	NR	8E-27				Affymetrix [~ 8270000] (imputed)	N
973	chr6	50959274	50959275	rs80234846	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 86)	19,670 European ancestry individuals	NA	6p12.3		rs80234846-?	NR	3E-10				NR [9705931] (imputed)	N
973	chr6	50963776	50963777	rs4711966	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	6p12.3	NR	rs4711966-A	0.34	1E-8		0.0109	[0.0071-0.0147] unit increase	NR [NR]	N
973	chr6	50971995	50971996	rs78390049	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p12.3	NR	rs78390049-T	0.409261	5E-11				Affymetrix, Illumina [24558453] (imputed)	N
973	chr6	50975100	50975101	rs1575671	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder	29,475 European ancestry cases, 63,482 European ancestry controls	NA	6p12.3	NR	rs1575671-G	0.138985	7E-6		1.07	[1.04-1.1]	Affymetrix [7791636] (imputed)	N
973	chr6	50985885	50985886	rs9381923	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 22)	4,680 European ancestry individuals	3,566 European ancestry individuals	6p12.3		rs9381923-T	0.255287009	7E-19				Illumina [7417619] (imputed)	N
974	chr6	50987767	50987768	rs190759	21658281	Aouizerat BE	2011-06-10	BMC Cardiovasc Disord	GWAS for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease.	Sudden cardiac arrest	88 European ancestry cases, 517 European ancestry controls	NA	6p12.3	intergenic	rs190759-?	0.18	5E-6	(Additive)	1.11	[1.06-1.16]	Affymetrix [319222]	N
974	chr6	51028171	51028172	rs75886551	30276832	Edwards AC	2018-10-01	Alcohol Clin Exp Res	Meta-Analysis of Genetic Influences on Initial Alcohol Sensitivity.	Initial alcohol sensitivity	6,039 European ancestry individuals, 892 African ancestry individuals, 408 American ancestry individuals	NA	6p12.3	FTH1P5	rs75886551-?	NR	9E-6				Affymetrix, Illumina [15642250] (imputed)	N
974	chr6	51037568	51037569	rs1749167	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6p12.3	NR	rs1749167-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
974	chr6	51044466	51044467	rs283558	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	6p12.3	TFAP2B	rs283558-T	0.437	1E-28		0.0079	[0.0065-0.0093] unit increase	Affymetrix, Illumina [8176554] (imputed)	N
974	chr6	51052202	51052203	rs2505292	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6p12.3	NR	rs2505292-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
974	chr6	51058720	51058721	rs283566	19389651	Smith JG	2009-02-15	Heart Rhythm	Genome-wide association study of electrocardiographic conduction measures in an isolated founder population: Kosrae.	Electrocardiographic conduction measures	1,262 Kosraen individuals	NA	6p12.3	NR	rs283566-?	0.16	9E-6	(P wave duration)			Affymetrix [338049]	N
974	chr6	51061394	51061395	rs283562	32844198	Dumitrescu L	2020-08-01	Brain	Genetic variants and functional pathways associated with resilience to Alzheimer's disease.	Combined resilience (covariance of educational attainment with residual cognitive resilience)	3,820 European ancestry cognitively unimpaired individuals	NA	6p12.3	NR	rs283562-?	0.436	7E-6		0.049429	NR unit increase	Affymetrix, Illumina [4840740] (imputed)	N
974	chr6	51068716	51068717	rs7775861	23517042	Melen E	2013-04-01	Clin Exp Allergy	Genome-wide association study of body mass index in 23 000 individuals with and without asthma.	Body mass index in non-asthmatics	6,025 European ancestry children, 567 children,  6,334 European ancestry adult individuals, 2,050 adult individuals	NA	6p12.3	AL139097.1	rs7775861-T	0.38	9E-8	(Adults)			Illumina [up to 527642]	N
974	chr6	51098647	51098648	rs4533991	30514930	Mukherjee S	2018-12-04	Mol Psychiatry	Genetic data and cognitively defined late-onset Alzheimer's disease subgroups.	Alzheimer's disease with no specific cognitive domain impairment	Up to 1,584 European ancestry cases, 3,447 European ancestry controls	NA	6p12.3	NR	rs4533991-T	0.46	2E-6		1.32	[1.2-1.44]	NR [up to 6398204] (imputed)	N
974	chr6	51099255	51099256	rs7762246	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6p12.3	LOC646517	rs7762246-G	0.11	6E-6	(Vigorous activity )	0.03	[NR] min/d increase	Illumina [899892]	N
974	chr6	51105568	51105569	rs10948606	28081215	Pardo LM	2017-01-12	PLoS One	Genome-Wide Association Studies of Multiple Keratinocyte Cancers.	Multiple keratinocyte cancers	2,106 European ancestry multiple keratinocyte cancer cases, 2,061 European ancestry single keratinocyte cancer cases, 135 European and unknown ancestry multiple keratinocyte cancer cases, 761 European and unknown ancestry single keratinocyte cancer cases	NA	6p12.3	intergenic	rs10948606-T	NR	4E-6		4.589	NR z-score decrease	Affymetrix, Illumina [up to 9001799] (imputed)	N
974	chr6	51108733	51108734	rs9381952	28081215	Pardo LM	2017-01-12	PLoS One	Genome-Wide Association Studies of Multiple Keratinocyte Cancers.	Multiple keratinocyte cancers	2,106 European ancestry multiple keratinocyte cancer cases, 2,061 European ancestry single keratinocyte cancer cases, 135 European and unknown ancestry multiple keratinocyte cancer cases, 761 European and unknown ancestry single keratinocyte cancer cases	NA	6p12.3	intergenic	rs9381952-A	NR	4E-6		4.591	NR z-score decrease	Affymetrix, Illumina [up to 9001799] (imputed)	N
975	chr6	51127859	51127860	rs149778459	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6p12.3	NR	rs149778459-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
975	chr6	51135957	51135958	rs9370019	28081215	Pardo LM	2017-01-12	PLoS One	Genome-Wide Association Studies of Multiple Keratinocyte Cancers.	Multiple keratinocyte cancers	2,106 European ancestry multiple keratinocyte cancer cases, 2,061 European ancestry single keratinocyte cancer cases, 135 European and unknown ancestry multiple keratinocyte cancer cases, 761 European and unknown ancestry single keratinocyte cancer cases	NA	6p12.3	intergenic	rs9370019-A	NR	5E-6		4.546	NR z-score increase	Affymetrix, Illumina [up to 9001799] (imputed)	N
975	chr6	51145593	51145594	rs11751804	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6p12.3	NR	rs11751804-?	NR	2E-21				Affymetrix [~ 8270000] (imputed)	N
975	chr6	51146839	51146840	rs2465028	31504550	Bradfield JP	2019-07-05	Hum Mol Genet	A Trans-ancestral Meta-Analysis of Genome-Wide Association Studies Reveals Loci Associated with Childhood Obesity.	Childhood obesity	8,613 European ancestry cases, 3,213 African American cases, 69 Moroccan ancestry cases, 986 Hispanic/Latino cases, 124 East Asian ancestry cases, 12,696 European ancestry controls, 1,392 African American controls, 64 Moroccan ancestry controls, 993 Hispanic/Latino controls, 454 East Asian ancestry controls	NA	6p12.3	NR	rs2465028-A	NR	2E-6	(Hispanic)	0.4432	[0.26-0.63] unit increase	Affymetrix, Illumina [up to 15123508] (imputed)	N
975	chr6	51159994	51159995	rs1555967	19557197	Heard-Costa NL	2009-06-26	PLoS Genet	NRXN3 is a novel locus for waist circumference: a genome-wide association study from the CHARGE Consortium.	Waist circumference	31,373 European ancestry individuals	38,641 individuals	6p12.3	PKHD1	rs1555967-?	NR	3E-6				Affymetrix, Illumina [up to 512349]	N
975	chr6	51165536	51165537	rs116100277	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder	29,475 European ancestry cases, 63,482 European ancestry controls	NA	6p12.3	NR	rs116100277-T	0.0144628	1E-6		1.073	[1.04-1.1]	Affymetrix [7791636] (imputed)	N
975	chr6	51171407	51171408	rs1327265	31466081	Luo A	2019-08-29	Neuropsychopharmacology	Epigenetic aging is accelerated in alcohol use disorder and regulated by genetic variation in APOL2.	Epigenetic age acceleration in alcohol use disorder	154 European ancestry individuals, 156 African American individuals	NA	6p12.3	PKHD1	rs1327265-A	NR	6E-7		2.17	NR unit increase	Illumina [up to 666531]	N
975	chr6	51171407	51171408	rs1327265	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Yeast infection	52,218 European ancestry cases, 10,235 European ancestry controls	NA	6p12.3	NR	rs1327265-?	NR	6E-6		0.0303	[0.017-0.043] unit decrease	Illumina [at least 560000] (imputed)	N
975	chr6	51177810	51177811	rs1327259	33287642	Said MA	2020-12-08	J Am Heart Assoc	Associations of Observational and Genetically Determined Caffeine Intake With Coronary Artery Disease and Diabetes Mellitus.	Caffeine consumption from coffee	373,522 European ancestry individuals	NA	6p12.3	PKHD1	rs1327259-A	0.614152	3E-11		0.015707	[0.011-0.02] unit increase	Affymetrix [19400838] (imputed)	N
975	chr6	51177810	51177811	rs1327259	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		6p12.3	PKHD1	rs1327259-A	0.6123	1E-13		0.0104489	[0.0077-0.0132] unit increase	Affymetrix [12370749]	N
975	chr6	51179259	51179260	rs2465037	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Coffee consumption	335,909 European ancestry individuals	39,924 European ancestry individuals	6p12.3	PKHD1	rs2465037-C	0.656	4E-11		0.0103	[0.0072-0.0134] unit increase	Affymetrix [~ 7740000] (imputed)	N
975	chr6	51180764	51180765	rs2465043	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	6p12.3	TFAP2B	rs2465043-G	0.6441	3E-6		1.03	[1.02-1.04]	Affymetrix, Illumina [~ 27000000] (imputed)	N
975	chr6	51187786	51187787	rs994270	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6p12.3	NR	rs994270-?	NR	3E-15				Affymetrix [~ 8270000] (imputed)	N
975	chr6	51187786	51187787	rs994270	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	6p12.3		rs994270-?	NR	2E-15				NR [~ 8900000] (imputed)	N
975	chr6	51187926	51187927	rs13197622	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6p12.3	NR	rs13197622-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
975	chr6	51200871	51200872	rs2709668	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels	3,806 African American individuals	NA	6p12.3		rs2709668-?	NR	7E-7		0.15	[0.091-0.209] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
975	chr6	51205576	51205577	rs2504671	31409800	Pazoki R	2019-08-13	Nat Commun	GWAS for urinary sodium and potassium excretion highlights pathways shared with cardiovascular traits.	Urinary sodium excretion	446,237 European ancestry individuals	7,612 African ancestry individuals, 10,095 South Asian ancestry individuals	6p12.3	PKHD1	rs2504671-C	0.765267	1E-17	(EA)	0.0125233	[0.0097-0.0154] unit increase	Affymetrix [~ 8800000] (imputed)	N
975	chr6	51221456	51221457	rs17665889	27028160	Sherva R	2016-03-30	JAMA Psychiatry	Genome-wide Association Study of Cannabis Dependence Severity, Novel Risk Variants, and Shared Genetic Risks.	Cannabis dependence symptom count	Up to 6,000 African American ancestry individuals, 8,754 European ancestry individuals	At least 1,893 European ancestry individuals	6p12.3	Intergenic	rs17665889-A	0.9	5E-6	(EA)			Illumina [NR] (imputed)	N
975	chr6	51238913	51238914	rs13219893	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fruit consumption	335,576 European ancestry individuals	NA	6p12.3	TFAP2D, TFAP2B, PKHD1	rs13219893-?	NR	9E-9		0.0236828	[0.016-0.032] unit increase	Affymetrix [25921788] (imputed)	N
975	chr6	51241139	51241140	rs2465018	33287642	Said MA	2020-12-08	J Am Heart Assoc	Associations of Observational and Genetically Determined Caffeine Intake With Coronary Artery Disease and Diabetes Mellitus.	Caffeine consumption from tea	395,866 European ancestry individuals	NA	6p12.3	PKHD1	rs2465018-G	0.769413	1E-16		0.02211	[0.017-0.027] unit decrease	Affymetrix [19400838] (imputed)	N
975	chr6	51243034	51243035	rs1775255	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	6p12.3	PKHD1	rs1775255-G	0.523411	2E-21		0.0133493	[0.011-0.016] unit decrease	Affymetrix [12370749]	N
976	chr6	51270701	51270702	rs9474008	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p12.3	NR	rs9474008-C	0.0122	1E-8	(MCCC2)	0.1297	NR unit increase	Illumina [1671387] (imputed)	N
976	chr6	51274638	51274639	rs10807422	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fruit consumption	335,576 European ancestry individuals	NA	6p12.3	TFAP2D, TFAP2B, PKHD1	rs10807422-?	NR	9E-21		0.0228549	[0.018-0.028] unit decrease	Affymetrix [25921788] (imputed)	N
976	chr6	51291181	51291182	rs116033650	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	6p12.3		rs116033650-?	NR	4E-8				NR [~ 8900000] (imputed)	N
976	chr6	51298496	51298497	rs2504716	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Tea consumption	336,898 European ancestry individuals	39,924 European ancestry individuals	6p12.3	PKHD1	rs2504716-T	0.2098	5E-13		0.0134	[0.0097-0.0171] unit increase	Affymetrix [~ 7740000] (imputed)	N
976	chr6	51311673	51311674	rs67672396	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol use disorder	57,564 European ancestry cases, 256,395 European ancestry controls	NA	6p12.3	NR	rs67672396-T	0.2803	4E-8		5.503	[NR] unit decrease	Affymetrix [7003540] (imputed)	N
976	chr6	51339420	51339421	rs10948615	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	6p12.3	NR	rs10948615-C	0.306	4E-8		0.00783127	[0.005-0.0106] unit decrease	NR [~ 9732723] (imputed)	N
976	chr6	51354716	51354717	rs9474019	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6p12.3		rs9474019-?	NR	2E-8				NR [~ 8900000] (imputed)	N
976	chr6	51359802	51359803	rs4715221	30940813	Kranzler HR	2019-04-02	Nat Commun	Genome-wide association study of alcohol consumption and use disorder in 274,424 individuals from multiple populations.	Alcohol use disorder	34,658 European American cases, 167,346 European American controls, 17,267 African American cases, 39,381 African American controls, 3,449 Latino American cases, 10,726 Latino American controls, 164 East Asian American cases, 1,210 East Asian American controls, 46 South Asian American cases, 144 South Asian American controls	NA	6p12.3	PKHD1	rs4715221-A	0.698	1E-8	(EA)	1.0546	[1.04-1.07]	Affymetrix [up to 12500000] (imputed)	N
976	chr6	51363539	51363540	rs72902139	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	6p12.3	NR	rs72902139-?	NR	5E-9	(right lateral orbitofrontal)			NR [9227495] (imputed)	N
977	chr6	51385008	51385009	rs4644046	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	6p12.3	intergenic	rs4644046-A	0.5996	1E-6		0.0275	[0.016-0.039] unit increase	NR [8041861] (imputed)	N
977	chr6	51406847	51406848	rs17752199	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Intraocular pressure	101,939 European ancestry cases	NA	6p12.3	NR	rs17752199-A		5E-18		0.21	[0.17-0.25] unit increase	NR [NR]	N
977	chr6	51406847	51406848	rs17752199	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Intraocular pressure	133,492 European ancestry individuals	NA	6p12.3	PKHD1	rs17752199-?	NR	1E-13		0.1563	[0.12-0.2] unit increase	Affymetrix, Illumina [up to 40000000] (imputed)	N
977	chr6	51406847	51406848	rs17752199	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Glaucoma	11,018 European ancestry cases, 126,068 European ancestry controls	NA	6p12.3	PKHD1	rs17752199-?	NR	4E-7		1.1445367	[1.08660700301257-1.20555494958291]	Affymetrix [up to 40000000] (imputed)	N
977	chr6	51406847	51406848	rs17752199	29891935	Choquet H	2018-06-11	Nat Commun	A multiethnic genome-wide association study of primary open-angle glaucoma identifies novel risk loci.	Glaucoma (primary open-angle)	10,523 European ancestry cases, 203,579 European ancestry controls, 411 Hispanic cases, 4,778 Hispanic controls, 463 East Asian ancestry cases, 4,907 East Asian ancestry controls, 298 African American cases, 1,549 African American controls, 204 South Asian ancestry cases, 4,916 South Asian ancestry controls, 272 African British cases, 4,831 African British controls, 144 mixed ancestry cases, 3,427 mixed ancestry controls	NA	6p12.3	PKHD1	rs17752199-A	NR	5E-9		1.14	1.09-1.19	Affymetrix [at least 665500] (imputed)	N
977	chr6	51406847	51406848	rs17752199	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	6p12.3	PKHD1	rs17752199-A	0.9	2E-14		0.16	[0.12-0.2] unit increase	Affymetrix, Illumina [NR] (imputed)	N
977	chr6	51413012	51413013	rs16881572	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	6p12.3	NR	rs16881572-G	0.9448	6E-10		0.0681	[0.047-0.09] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
977	chr6	51414921	51414922	rs72904286	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	8,758 European ancestry cases, 108,815 European ancestry controls, 1,996 East Asian ancestry cases, 16,559  East Asian ancestry controls, 171 Sub-Saharan African ancestry cases, 94 Sub-Saharan African ancestry controls	NA	6p12.3	TFAP2B-PKHD1	rs72904286-T	NR	1E-12		0.830191	[0.78-0.88]	Illumina [NR] (imputed)	N
977	chr6	51414921	51414922	rs72904286	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	23,963 European ancestry cases, 306,942 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	43,254 European ancestry cases, 1,471,118 European ancestry controls	6p12.3	TFAP2B, PKHD1	rs72904286-T	NR	2E-24		0.12	unit decrease	Illumina [15409056] (imputed)	N
977	chr6	51414921	51414922	rs72904286	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6p12.3	NR	rs72904286-?	NR	2E-11				Affymetrix [~ 8270000] (imputed)	N
977	chr6	51414921	51414922	rs72904286	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	6p12.3	TFAP2B, PKHD1	rs72904286-C	0.8986	5E-20		0.1997	[0.15-0.25] unit increase	Affymetrix [~ 11900000] (imputed)	N
977	chr6	51433598	51433599	rs2491422	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	9,179 European ancestry cases, 134,471 European ancestry controls, 1,983 East Asian ancestry cases, 13,719 East Asian ancestry controls, 127 Sub-Saharan African ancestry cases, 100 Sub-Saharan African ancestry controls	NA	6p12.3	TFAP2B-PKHD1	rs2491422-T	NR	3E-13		0.821766	[0.77-0.87]	Illumina [NR] (imputed)	N
977	chr6	51443411	51443412	rs2495850	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glaucoma	10,411 European ancestry cases, 474,568 European ancestry controls, 8,448 East Asian ancestry cases, 168,903 East Asian ancestry controls	NA	6p12.3		rs2495850-C	NR	2E-12		0.1281	[0.092-0.164] unit decrease	Affymetrix, Illumina [25844939] (imputed)	N
977	chr6	51446614	51446615	rs2439042	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Intraocular pressure	133,492 European ancestry individuals	NA	6p12.3	PKHD1	rs2439042-T	0.9	2E-16				Affymetrix, Illumina [8002429] (imputed)	N
977	chr6	51460153	51460154	rs2579989	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	6p12.3	TFAP2B, PKHD1	rs2579989-T	0.1009	3E-18		0.192	[0.15-0.24] unit decrease	Affymetrix [~ 11900000] (imputed)	N
977	chr6	51477639	51477640	rs6911544	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Intake of total sugars	174,424 European ancestry individuals	NA	6p12.3	RP3-335N17.2	rs6911544-A	0.82	1E-6		1.05	[0.62-1.48] g/day increase	Affymetrix [10353649] (imputed)	N
977	chr6	51477822	51477823	rs2771011	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	6p12.3		rs2771011-?	NR	3E-12				NR [~ 8900000] (imputed)	N
977	chr6	51487415	51487416	rs1414506	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6p12.3	NR	rs1414506-?	NR	9E-14				Affymetrix [~ 8270000] (imputed)	N
977	chr6	51492045	51492046	rs9474033	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota presence (family Pseudomonadaceae id.3718)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	6p12.3		rs9474033-G	NR	4E-8		5.500295	z score increase	Affymetrix, Illumina [NR] (imputed)	N
977	chr6	51492861	51492862	rs12212034	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	6p12.3	PKHD1	rs12212034-T	0.3743	1E-11		0.0018	[0.0012-0.0024] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
977	chr6	51505336	51505337	rs1819564	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	6p12.3	NR	rs1819564-T	0.9727	4E-8		0.0757	[0.049-0.103] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
978	chr6	51512706	51512707	rs2580009	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fruit consumption	335,576 European ancestry individuals	NA	6p12.3	TFAP2D, TFAP2B, PKHD1	rs2580009-?	NR	4E-16		0.0202332	[0.015-0.025] unit decrease	Affymetrix [25921788] (imputed)	N
978	chr6	51523738	51523739	rs115072237	32438682	Mateos MK	2020-05-19	Cancers (Basel)	Genome-Wide Association Meta-Analysis of Single-Nucleotide Polymorphisms and Symptomatic Venous Thromboembolism during Therapy for Acute Lymphoblastic Leukemia and Lymphoma in Caucasian Children.	Childhood ALL/LBL (acute lymphoblastic leukemia/lymphoblastic lymphoma) treatment-related venous thromboembolism	92 European ancestry cases, 1,481 European ancestry controls	NA	6p12.3	PKHD1	rs115072237-?		3E-6		5.882353	[2.78-12.5]	Illumina [NR] (imputed)	N
978	chr6	51536991	51536992	rs1396046	29235454	Choquet H	2017-12-13	Nat Commun	A large multi-ethnic genome-wide association study identifies novel genetic loci for intraocular pressure.	Intraocular pressure	56,819 European ancestry individuals, 5,748 Hispanic/Latino individuals, 5,119 East Asian ancestry individuals, 2,070 African American individuals	37,930 European and Asian ancestry individuals	6p12.3	PKHD1	rs1396046-?	NR	7E-10		0.08	[NR] unit decrease	Affymetrix [at least 665000] (imputed)	N
978	chr6	51540121	51540122	rs6941732	28360221	Boger CA	2017-03-30	J Am Soc Nephrol	NFAT5 and SLC4A10 Loci Associate with Plasma Osmolality.	Blood osmolality (transformed sodium)	45,889 European ancestry individuals, up to 8,765 Asian Indian ancestry individuals, up to 7,215 African ancestry individuals	17,637 European ancestry individuals	6p12.3	NR	rs6941732-T	0.75	5E-6	(AA)	0.1	[0.057-0.143] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
978	chr6	51562784	51562785	rs62461297	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fruit consumption	335,576 European ancestry individuals	NA	6p12.3	TFAP2D, TFAP2B, PKHD1	rs62461297-?	NR	3E-9		0.0231772	[0.016-0.031] unit decrease	Affymetrix [25921788] (imputed)	N
978	chr6	51562784	51562785	rs62461297	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6p12.3	NR	rs62461297-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
978	chr6	51574932	51574933	rs9367447	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	6p12.3		rs9367447-A	0.34	1E-14		7.72	z score increase	Affymetrix [9061022] (imputed)	N
978	chr6	51574932	51574933	rs9367447	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	6p12.3		rs9367447-A	0.34	9E-15		7.76	z score increase	Affymetrix [9061022] (imputed)	N
978	chr6	51574932	51574933	rs9367447	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	6p12.3	NR	rs9367447-A	0.3189	7E-9				NR [9056863] (imputed)	N
978	chr6	51574932	51574933	rs9367447	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	6p12.3		rs9367447-?	NR	8E-11				NR [9705931] (imputed)	N
978	chr6	51576409	51576410	rs2025747	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	6p12.3		rs2025747-T	0.34	8E-30		11.34	z score increase	Affymetrix [9061022] (imputed)	N
978	chr6	51576409	51576410	rs2025747	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	6p12.3	NR	rs2025747-T	0.3182	1E-16				NR [9056863] (imputed)	N
978	chr6	51617276	51617277	rs76357250	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	6p12.3	NR	rs76357250-?	NR	1E-8	(right lateral orbitofrontal)			NR [9227495] (imputed)	N
978	chr6	51622448	51622449	rs2025751	24002674	Ozel AB	2013-09-04	Hum Genet	Genome-wide association study and meta-analysis of intraocular pressure.	Intraocular pressure	2,847 European ancestry primary open angle glaucoma cases, 3,389 European ancestry controls	NA	6p12.3	PKHD1	rs2025751-A	0.46	7E-7		0.6	[0.33-0.87] mmHg increase	Illumina [466573]	N
978	chr6	51635178	51635179	rs149476743	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	6p12.3	PKHD1	rs149476743-T	0.995	1E-7	(AA)	0.143	unit increase	Illumina [NR] (imputed)	N
979	chr6	51643013	51643014	rs728996	23633212	Rinella ES	2013-04-30	J Clin Endocrinol Metab	Genome-wide association of single-nucleotide polymorphisms with weight loss outcomes after Roux-en-Y gastric bypass surgery.	Weight loss (gastric bypass surgery)	86 European ancestry individuals with least EBWL, 89 European ancestry individuals with most EBWL	164 European ancestry individuals with least EBWL, 169 European ancestry individuals with most EBWL		PKHD1	rs728996-?	0.53	5E-7		1.67	[NR]	Affymetrix [730767]	N
979	chr6	51655962	51655963	rs80047024	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	6p12.3	PKHD1	rs80047024-C	NR	9E-7	(G_Faecalitalea_HB)	1.4162	[0.85-1.98] unit increase	Illumina [7711310] (imputed)	N
979	chr6	51666630	51666631	rs10498792	17903305	Murabito JM	2007-09-19	BMC Med Genet	A genome-wide association study of breast and prostate cancer in the NHLBI's Framingham Heart Study.	Prostate cancer	59 cases, 558 controls	NA	6p12.2	PKHD1	rs10498792-?	NR	3E-6				Affymetrix [70897]	N
979	chr6	51683987	51683988	rs150576801	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	6p12.2	PKHD1	rs150576801-T	0.995	2E-7	(AA)	0.139	unit increase	Illumina [NR] (imputed)	N
979	chr6	51685227	51685228	rs6923760	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 11)	4,680 European ancestry individuals	3,566 European ancestry individuals	6p12.2		rs6923760-G	0.478962285	1E-10				Illumina [7417619] (imputed)	N
979	chr6	51689595	51689596	rs146895361	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	6p12.2	PKHD1	rs146895361-A	0.995	6E-8	(AA)	0.15	unit increase	Illumina [NR] (imputed)	N
979	chr6	51690107	51690108	rs56135595	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	6p12.2	NR	rs56135595-G	0.149105	3E-8		0.048553552	[0.031-0.066] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
979	chr6	51690107	51690108	rs56135595	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	6p12.2	Intergenic	rs56135595-T	0.1494	3E-8		0.0222	[0.014-0.03] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
979	chr6	51703011	51703012	rs788506	33692830	Indencleef K	2021-02-22	Front Genet	The Intersection of the Genetic Architectures of Orofacial Clefts and Normal Facial Variation.	Facial morphology traits (59 NSCL/P endophenotypic segments)	8,246 European ancestry individuals	NA	6p12.2	NR	rs788506-?	NR	9E-9	(Quadrant II (Nose), Segment 44)	0.022984019	NR unit decrease	NR [7417619] (imputed)	N
979	chr6	51712758	51712759	rs7766366	26423011	Wain LV	2015-09-27	Lancet Respir Med	Novel insights into the genetics of smoking behaviour, lung function, and chronic obstructive pulmonary disease (UK BiLEVE): a genetic association study in UK Biobank.	Lung function (low FEV1 vs high FEV1) x smoking interaction	9,745 European ancestry never smokers with low FEV1 measurements, 4,902 European ancestry never smokers with high FEV1 measurements, 9,748 European ancestry heavy smokers with low FEV1 measurements, 4,906 European ancestry heavy smokers with high FEV1 measurements	NA	6p12.2	NR	rs7766366-?	NR	2E-7				Affymetrix [28509962] (imputed)	N
979	chr6	51716714	51716715	rs9370068	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6p12.2	NR	rs9370068-?	NR	8E-13				Affymetrix [~ 8270000] (imputed)	N
979	chr6	51722692	51722693	rs9463733	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	6p12.2		rs9463733-?	NR	8E-29				NR [~ 8900000] (imputed)	N
979	chr6	51722692	51722693	rs9463733	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Red vs. brown/black hair color	15,731 British ancestry red hair individuals, 283,920 British ancestry brown or black hair individuals	NA	6p12.2	PKHD1	rs9463733-?	0.6805	3E-28		1.1516757	NR	Affymetrix [9154080] (imputed)	N
979	chr6	51737176	51737177	rs1321512	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	6p12.2		rs1321512-?	NR	1E-12				NR [~ 8900000] (imputed)	N
979	chr6	51760526	51760527	rs2474896	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	6p12.2		rs2474896-T	0.55	2E-14				NR [NR] (imputed)	N
979	chr6	51760526	51760527	rs2474896	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	6p12.2		rs2474896-T	0.55	4E-16		0.012	% increase	NR [NR] (imputed)	N
980	chr6	51783277	51783278	rs12199884	30294719	Zeng Y	2018-08-24	JAMA Netw Open	Sex Differences in Genetic Associations With Longevity.	Longevity	564 Han Chinese ancestry male centenarian cases, 1,614 Han Chinese ancestry female centenarian cases, 773 Han Chinese ancestry male middle-aged controls, 1,526 Han Chinese ancestry female middle-aged controls	NA	6p12.2	PKHD1	rs12199884-?	0.96	4E-6	(male)	2.3364484	[1.64-3.33]	Illumina [5595657] (imputed)	N
980	chr6	51798759	51798760	rs1884953	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6p12.2	NR	rs1884953-?	NR	6E-13				Affymetrix [~ 8270000] (imputed)	N
980	chr6	51802265	51802266	rs17747449	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Unilateral cleft lip and palate	205 Asian ancestry cases, 315 European ancestry cases, 692 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	6p12.2	NR	rs17747449-?	NR	3E-6		2.06	[1.89-2.25]	Illumina [539000] (imputed)	N
980	chr6	51809080	51809081	rs2499468	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	6p12.2	NR	rs2499468-C	0.3468	2E-9		0.015628561	[0.011-0.021] unit decrease	Affymetrix [10549349] (imputed)	N
980	chr6	51825621	51825622	rs1547026	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		6p12.2	PKHD1	rs1547026-T	0.708687	7E-12		0.0104407	[0.0075-0.0134] unit decrease	Affymetrix [12370749]	N
980	chr6	51832493	51832494	rs13205180	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	6p12.2	PKHD1	rs13205180-T	0.493653	1E-9		0.036774743	[0.025-0.049] unit increase	Affymetrix [7288503] (imputed)	N
980	chr6	51832493	51832494	rs13205180	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Diastolic blood pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	6p12.2	PKHD1	rs13205180-T	0.49	7E-10		0.168	[0.11-0.23] unit increase	Affymetrix [~ 9800000] (imputed)	N
980	chr6	51832493	51832494	rs13205180	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	6p12.2	PKHD1	rs13205180-C		1E-9		0.143	unit decrease	Affymetrix [at least 2696785] (imputed)	N
980	chr6	51834019	51834020	rs1581717	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	6p12.2		rs1581717-A	NR	2E-12		0.0151	[0.011-0.019] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
980	chr6	51834019	51834020	rs1581717	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	6p12.2	NR	rs1581717-A	0.483003	9E-15		0.014422	[0.011-0.018] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
980	chr6	51834019	51834020	rs1581717	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	6p12.2		rs1581717-?	NR	2E-11				NR [~ 8900000] (imputed)	N
980	chr6	51834279	51834280	rs1114348	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	6p12.2		rs1114348-A	NR	7E-9		0.0113	[0.0076-0.015] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
980	chr6	51834279	51834280	rs1114348	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	6p12.2		rs1114348-A	NR	4E-13		0.0146	[0.011-0.019] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
980	chr6	51834296	51834297	rs1114347	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	6p12.2	NR	rs1114347-G	NR	5E-9		0.0146	[0.0097-0.0195] unit increase	Affymetrix [9000000] (imputed)	N
980	chr6	51838262	51838263	rs9296668	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	6p12.2	PKHD1	rs9296668-G	0.483801	2E-10		0.014040366	[0.0097-0.0183] unit increase	Affymetrix [93095623] (imputed)	N
980	chr6	51838262	51838263	rs9296668	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	6p12.2	NR	rs9296668-G	0.48314	4E-11		0.012338	[0.0087-0.016] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
980	chr6	51838262	51838263	rs9296668	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p12.2	NR	rs9296668-G	0.439007	6E-13				Affymetrix, Illumina [24653286] (imputed)	N
980	chr6	51838262	51838263	rs9296668	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	6p12.2	NR	rs9296668-G	0.483048	9E-15		0.014447	[0.011-0.018] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
980	chr6	51838262	51838263	rs9296668	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p12.2	NR	rs9296668-G	0.43997	1E-12				Affymetrix, Illumina [24558453] (imputed)	N
980	chr6	51838262	51838263	rs9296668	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	6p12.2		rs9296668-?	NR	2E-8				NR [~ 8900000] (imputed)	N
980	chr6	51839549	51839550	rs2499472	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	6p12.2	PKHD1	rs2499472-C	0.672547	8E-11		0.015222903	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
980	chr6	51889482	51889483	rs45517932	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Cystatin C levels	437,846 European ancestry individuals	NA	6p12.2		rs45517932-?	NR	3E-24		0.104248	[0.084-0.125] unit decrease	NR [9800000] (imputed)	N
980	chr6	51889482	51889483	rs45517932	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Creatinine levels	437,660 European ancestry individuals	NA	6p12.2		rs45517932-?	NR	4E-25		0.112415	[0.091-0.134] unit decrease	NR [9800000] (imputed)	N
980	chr6	51889482	51889483	rs45517932	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	6p12.2	NR	rs45517932-A	NR	5E-17		0.1096	[0.084-0.135] unit increase	Affymetrix [9000000] (imputed)	N
980	chr6	51889482	51889483	rs45517932	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	6p12.2	NR	rs45517932-A	NR	5E-13		0.0946	[0.069-0.12] unit decrease	Affymetrix [9000000] (imputed)	N
980	chr6	51889482	51889483	rs45517932	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	6p12.2	NR	rs45517932-A	NR	3E-18		0.1141	[0.088-0.14] unit decrease	Affymetrix [9000000] (imputed)	N
981	chr6	51947998	51947999	rs137852944	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Gamma glutamyl transferase levels	437,651 European ancestry individuals	NA	6p12.2		rs137852944-?	NR	2E-12		0.269275	[0.19-0.35] unit increase	NR [9800000] (imputed)	N
981	chr6	51978144	51978145	rs10948674	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	6p12.2	NR	rs10948674-?	NR	3E-31		0.081	[0.068-0.094] unit increase	Illumina [7760689] (imputed)	N
981	chr6	52034366	52034367	rs569533775	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p12.2	IL17A	rs569533775-T	0.0011	2E-6		1.7066	[1-2.41] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
982	chr6	52062198	52062199	rs1937143	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	6p12.2	NR	rs1937143-A	NR	8E-6		0.0879	[0.049-0.127] unit decrease	Illumina [11133794] (imputed)	N
982	chr6	52063053	52063054	rs2154224	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	6p12.2	NR	rs2154224-A	NR	3E-6		0.0917	[0.053-0.13] unit increase	Illumina [11133794] (imputed)	N
982	chr6	52090504	52090505	rs34554839	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Cuneus cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	6p12.2	NR	rs34554839-?		8E-6				Illumina [4322238] (imputed)	N
982	chr6	52101738	52101739	rs763780	28470677	Tang H	2017-05-03	Int J Cancer	Genetic polymorphisms associated with pancreatic cancer survival: a genome-wide association study.	Survival in pancreatic cancer	868 European ancestry cases	820 European ancestry cases	6p12.2	IL17F	rs763780-G	NR	3E-8		3.3	[2.1-5.1]	NR [7738399] (imputed)	N
982	chr6	52101738	52101739	rs763780	22142827	Innocenti F	2011-12-05	Clin Cancer Res	A genome-wide association study of overall survival in pancreatic cancer patients treated with gemcitabine in CALGB 80303.	Response to gemcitabine in pancreatic cancer	294 European ancestry cases	NA	6p12.2	IL17F	rs763780-G	NR	3E-8		3.3	[2.10-5.10]	Illumina [330690]	N
982	chr6	52108583	52108584	rs11465543	30276832	Edwards AC	2018-10-01	Alcohol Clin Exp Res	Meta-Analysis of Genetic Influences on Initial Alcohol Sensitivity.	Initial alcohol sensitivity	6,039 European ancestry individuals, 892 African ancestry individuals, 408 American ancestry individuals	NA	6p12.2	IL17F	rs11465543-?	NR	2E-6				Affymetrix, Illumina [15642250] (imputed)	N
982	chr6	52122939	52122940	rs1781011	33407418	Jonsson A	2021-01-06	BMC Med Genomics	Genome-wide association study of circulating levels of glucagon during an oral glucose tolerance test.	Glucagon levels in response to oral glucose tolerance test (30 minutes)	553 European ancestry individuals, 1,346 individuals	NA	6p12.2	NR	rs1781011-T	0.5686	6E-6		0.1501	[0.085-0.215] unit decrease	Illumina [NR] (imputed)	N
982	chr6	52135493	52135494	rs3789775	27670397	Reyes-Gibby CC	2016-09-27	Sci Rep	Genome-wide association study suggests common variants within RP11-634B7.4 gene influencing severe pre-treatment pain in head and neck cancer patients.	Pre-treatment pain in head and neck squamous cell carcinoma	148 European ancestry cases, 810 European ancestry controls	58 European ancestry cases, 352 European ancestry controls	6p12.2	NR	rs3789775-A	0.13	3E-6		1.8	[1.40-2.30]	Illumina [714494]	N
982	chr6	52162414	52162415	rs61126502	33269293	Kannambath S	2020-10-16	Open Forum Infect Dis	Genome-Wide Association Study Identifies Novel Colony Stimulating Factor 1 Locus Conferring Susceptibility to Cryptococcosis in Human Immunodeficiency Virus-Infected South Africans.	Cryptococcosis in HIV infection	319 South African ancestry cases, 399 South African ancestry controls	NA	6p12.2	MCM3, IL17F	rs61126502-?	NR	8E-6		1.065	[NR]	Illumina [2686126] (imputed)	N
983	chr6	52169691	52169692	rs76080057	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	6p12.2		rs76080057-C	0.0634169999999999	4E-10		0.029031241	[0.02-0.038] unit increase	Affymetrix [93095623] (imputed)	N
983	chr6	52179366	52179367	rs142366299	30850646	Tziotzios C	2019-03-08	Nat Commun	Genome-wide association study in frontal fibrosing alopecia identifies four susceptibility loci including HLA-B*07:02.	Frontal fibrosing alopecia	1,016 European ancestry cases, 4,145 European ancestry controls		6p12.2	NR	rs142366299-T	0.012	6E-6		2.34	[1.62-3.40]	Illumina [~ 8000000] (imputed)	N
983	chr6	52182414	52182415	rs73443903	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-9 levels	3,634 Finnish ancestry individuals	NA	6p12.2	NR	rs73443903-C		6E-6		0.2101	[0.12-0.3] SD units decrease	NR [10700000] (imputed)	N
983	chr6	52220792	52220793	rs9382099	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	6p12.2	NR	rs9382099-?	NR	8E-6	(AA)	25.29	[22.86-27.72]	Illumina [905956]	N
983	chr6	52245414	52245415	rs4712006	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Perceived intensity of glucose	1,757 European ancestry twins	NA	6p12.2	EFHC1	rs4712006-T	0.63	2E-6		0.17	[0.092-0.248] unit increase	Illumina [4381914] (imputed)	N
983	chr6	52254148	52254149	rs10484876	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	6p12.2	NR	rs10484876-?	NR	1E-7	(AA)	45.75	[43.26-48.24]	Illumina [905956]	N
983	chr6	52255686	52255687	rs182429465	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-7 levels	3,409 Finnish ancestry individuals	NA	6p12.2	NR	rs182429465-C		3E-8		0.5444	[0.35-0.74] SD units increase	NR [10700000] (imputed)	N
983	chr6	52267180	52267181	rs12662189	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p12.2		rs12662189-T	0.89	4E-9				Affymetrix [10369434] (imputed)	N
983	chr6	52267180	52267181	rs12662189	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	6p12.2	PAQR8	rs12662189-C	0.110565	8E-11		0.02320784	[0.016-0.03] unit increase	Affymetrix [93095623] (imputed)	N
983	chr6	52267253	52267254	rs2078064	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	6p12.2	PAQR8	rs2078064-A	0.11	7E-11		0.03801344	[0.027-0.049] unit increase	Affymetrix [~ 2500000] (imputed)	N
983	chr6	52279235	52279235	rs70977353	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	6p12.2		rs70977353-GT	0.251556	9E-10		0.015624689	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
983	chr6	52279561	52279562	rs141174645	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	6p12.2		rs141174645-A	0.069099	3E-20		0.040974163	[0.032-0.05] unit decrease	Affymetrix [93095623] (imputed)	N
983	chr6	52281071	52281072	rs56032325	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	6p12.2	EFHC1	rs56032325-A	0.0697	2E-16		0.05839813	[0.044-0.072] unit decrease	Affymetrix [~ 2500000] (imputed)	N
983	chr6	52283137	52283138	rs146818600	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	6p12.2	NR	rs146818600-C	0.930636	5E-25		0.039305	[0.032-0.047] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
983	chr6	52284430	52284431	rs13194636	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p12.2	NR	rs13194636-T	0.220402	2E-11				Affymetrix, Illumina [23114412] (imputed)	N
983	chr6	52284430	52284431	rs13194636	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	6p12.2	NR	rs13194636-T	0.249166	8E-13		0.016009	[0.012-0.02] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
983	chr6	52285956	52285957	rs9382107	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p12.2	NR	rs9382107-C	0.913833	2E-22				Affymetrix, Illumina [17210439] (imputed)	N
983	chr6	52290926	52290927	rs719395	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	6p12.2		rs719395-C	NR	9E-9		0.0126	[0.0083-0.0169] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
983	chr6	52290926	52290927	rs719395	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p12.2	EFHC1	rs719395-C	0.45803	4E-9		0.012948611	[0.0086-0.0173] unit decrease	Affymetrix [93095623] (imputed)	N
983	chr6	52290926	52290927	rs719395	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	6p12.2		rs719395-?	NR	7E-11				NR [~ 8900000] (imputed)	N
983	chr6	52292135	52292136	rs9357733	26542096	Marenholz I	2015-11-06	Nat Commun	Meta-analysis identifies seven susceptibility loci involved in the atopic march.	Atopic march	1,151 European ancestry early-onset eczema and childhood asthma cases, 10,030 European ancestry controls	1,277  European ancestry early-onset eczema and childhood asthma cases, 7,004  European ancestry controls	6p12.2	EFHC1, PAQR8, TRAM2	rs9357733-A	0.808	2E-8		1.27	[1.17-1.38]	Affymetrix, Illumina [1633153] (imputed)	N
983	chr6	52296582	52296583	rs9463787	32066683	Lacaze P	2020-01-27	Transl Psychiatry	Genetic associations with clozapine-induced myocarditis in patients with schizophrenia.	Clozapine-induced myocarditis in schizophrenia	33 cases, 62 controls	NA	6p12.2	EFHC1	rs9463787-G	0.13	8E-7		7.67	[2.63-22.36]	Illumina [6822414] (imputed)	N
984	chr6	52342731	52342732	rs1272152	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	6p12.2	NR	rs1272152-T	0.455527	4E-11		0.012781	[0.009-0.0166] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
984	chr6	52345612	52345613	rs1266788	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	6p12.2		rs1266788-?	NR	9E-8				NR [~ 8900000] (imputed)	N
984	chr6	52357070	52357071	rs17851770	33831438	Williams JE	2021-04-05	Genomics	Key genetic variants associated with variation of milk oligosaccharides from diverse human populations.	Human milk oligosaccharide concentration (lacto-N-fucopentaose III) in non-secretors	90 European, Sub-Saharan African, Hispanic or unknown ancestry individuals	NA	6p12.2		rs17851770-?	NR	5E-10				Illumina [1128286]	N
984	chr6	52360544	52360545	rs6919266	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	6p12.2		rs6919266-?	NR	2E-8				NR [~ 8900000] (imputed)	N
984	chr6	52363364	52363365	rs9367486	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	6p12.2	NR	rs9367486-?	NR	5E-7	(AA)	46.78	[44.17-49.39]	Illumina [905956]	N
984	chr6	52366761	52366762	rs2073183	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	6p12.2	EFHC1	rs2073183-G	0.114	2E-6	(AA)	0.041	NR unit increase	Illumina [NR] (imputed)	N
984	chr6	52366883	52366884	rs9474230	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs9474230-G	0.82502	1E-8		0.0703666	[0.047-0.094] decrease	Affymetrix [11014269] (imputed)	N
984	chr6	52384285	52384286	rs6902285	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6p12.2		rs6902285-?	NR	3E-11				NR [~ 8900000] (imputed)	N
984	chr6	52391950	52391951	rs62407923	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	6p12.2	NR	rs62407923-T	0.172473	3E-9		0.00650987	[0.0043-0.0087] unit increase	Affymetrix [16582909] (imputed)	N
984	chr6	52391950	52391951	rs62407923	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	6p12.2	NR	rs62407923-T	0.172473	2E-6		0.00590442	[0.0035-0.0083] unit increase	Affymetrix [16582965] (imputed)	N
984	chr6	52393346	52393347	rs55828716	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	6p12.2	TRAM2	rs55828716-C	0.7152	2E-9		0.0931	[0.063-0.124] unit increase	Affymetrix [~ 11900000] (imputed)	N
984	chr6	52404342	52404343	rs57323441	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	6p12.2	NR	rs57323441-C	0.12273299999999998	2E-9		0.0114104	[0.0075-0.0153] unit increase	Affymetrix [16578495] (imputed)	N
984	chr6	52408893	52408894	rs2179803	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	6p12.2	NR	rs2179803-?	NR	7E-8				Affymetrix [NR]	N
984	chr6	52411712	52411713	rs2268719	30289880	Qi G	2018-10-05	PLoS Genet	Heritability informed power optimization (HIPO) leads to enhanced detection of genetic associations across multiple traits.	Lipid traits (pleiotropy) (HIPO component 2)	188,577 European ancestry individuals	NA	6p12.2	TRAM2	rs2268719-?	NR	2E-8				NR [1800000]	N
984	chr6	52426284	52426285	rs796663884	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	6p12.2		rs796663884-CT	0.42	3E-14				NR [NR] (imputed)	N
984	chr6	52426284	52426285	rs796663884	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	6p12.2		rs796663884-CT	0.42	5E-10		0.009	% increase	NR [NR] (imputed)	N
984	chr6	52426284	52426285	rs796663884	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	6p12.2	TRAM2	rs796663884-CT	0.4226	2E-27		0.0211	[0.017-0.025] unit decrease	Affymetrix [18391927] (imputed)	N
984	chr6	52426300	52426301	rs398001580	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	6p12.2		rs398001580-C	NR	3E-9		0.0101	[0.0068-0.0134] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
985	chr6	52433893	52433894	rs55959984	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs55959984-A	0.709454	8E-18		0.0833621	[0.064-0.103] increase	Affymetrix [11014269] (imputed)	N
985	chr6	52450547	52450548	rs7746716	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Resistin levels	21,758 European ancestry individuals	9,173 individuals	6p12.2		rs7746716-A	0.52	5E-10		0.0494	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
985	chr6	52452584	52452585	rs2239620	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	LDL cholesterol levels	32,285 East Asian ancestry individuals, 173,082 European ancestry individuals	8,478 Chinese ancestry individuals	6p12.2	TRAM2	rs2239620-A	0.6293	2E-8	(Trans-ethnic initial)	0.0272	[0.017-0.038] unit increase (EA Beta value)	Affymetrix, Illumina [~ 1900000] (imputed)	N
985	chr6	52453219	52453220	rs2239619	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Resistin levels	21,758 European ancestry individuals	9,173 individuals	6p12.2		rs2239619-A	0.62	4E-10		0.0511	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
985	chr6	52453219	52453220	rs2239619	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	Total cholesterol levels	up to 237,050 European ancestry individuals	NA	6p12.2	NR	rs2239619-A	0.62	4E-7		0.016	unit increase	Illumina [242289]	N
985	chr6	52453219	52453220	rs2239619	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	Low density lipoprotein cholesterol levels	up to 237,050 European ancestry individuals, up to 16,935 African ancestry individuals, up to 30,468 South Asian ancestry individuals, up to 8,287 East Asian ancestry individuals, 5,084 Hispanic individuals	up to 286,268 European and unknown ancestry individuals	6p12.2	TRAM2	rs2239619-A	NR	4E-15		0.015933521	[0.012-0.02] unit increase	Illumina [242289]	N
985	chr6	52453219	52453220	rs2239619	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	Low density lipoprotein cholesterol levels	up to 237,050 European ancestry individuals	NA	6p12.2	NR	rs2239619-A	0.62	3E-8		0.018	unit increase	Illumina [242289]	N
985	chr6	52453219	52453220	rs2239619	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Total cholesterol levels	32,576 East Asian ancestry individuals, 187,365 European ancestry individuals	10,855 Chinese ancestry individuals	6p12.2	TRAM2	rs2239619-A	0.6148	3E-8	(Trans-ethnic initial)	0.0186	[0.012-0.026] unit increase (EA Beta values)	Affymetrix, Illumina [up to 1900000] (imputed)	N
985	chr6	52469903	52469904	rs9463802	32682390	Wang W	2020-07-18	BMC Genomics	Heritability and genome-wide association analyses of fasting plasma glucose in Chinese adult twins.	Fasting plasma glucose	382 Chinese ancestry twin pairs	NA	6p12.2	TRAM2-AS1	rs9463802-?		3E-6				NR [7405822] (imputed)	N
985	chr6	52475357	52475358	rs6921008	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6p12.2	TMEM14A	rs6921008-?	NR	8E-6	(oxalate)	0.22852033	[0.13-0.33] unit decrease	Affymetrix [at least 2500000] (imputed)	N
985	chr6	52478363	52478364	rs2063643	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	6p12.2	TRAM2	rs2063643-A	0.820618	1E-10		0.0174452	[0.012-0.023] unit increase	Affymetrix [NR] (imputed)	N
985	chr6	52527574	52527575	rs10948713	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Cardio-cerebrovascular disease in dyslipidemia	1,039 Korean ancestry cases, 19,727 Korean ancestry controls	NA	6p12.2		rs10948713-T	0.3607	4E-6		1.242	[1.133-1.36199999999999]	Affymetrix [7975321] (imputed)	N
985	chr6	52533749	52533750	rs11950	33290381	Li W	2020-12-07	Psychiatr Genet	The influence of regression models on genome-wide association studies of alcohol dependence: a comparison of binary and quantitative analyses.	Alcohol dependence	739 European ancestry cases, 1,251 European ancestry controls	NA	6p12.2	NR	rs11950-G	0.14	3E-6	(model 1)	0.52	[0.3-0.74] unit increase	Illumina [2100000] (imputed)	N
985	chr6	52538606	52538607	rs6909398	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Perceived intensity of neohesperidin dihydrochalcone	1,757 European ancestry twins	NA	6p12.2	TMEM14A	rs6909398-A	0.25	9E-6		0.18	[0.1-0.26] unit increase	Illumina [4381914] (imputed)	N
985	chr6	52546619	52546620	rs35319285	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p12.2	NR	rs35319285-T	0.01742	4E-9	(GPNMB)	0.04655	NR unit increase	Illumina [1671387] (imputed)	N
985	chr6	52549321	52549322	rs6923338	29534301	Nishida N	2018-03-13	Hepatology	Key HLA-DRB1-DQB1 haplotypes and role of the BTNL2 gene for response to a hepatitis B vaccine.	Response to hepatitis B vaccine	107 Japanese ancestry low responder individuals, 351 Japanese ancestry intermediate responder individuals, 735 Japanese ancestry high responder individuals	NA	6p12.2	TMEM14A	rs6923338-?		8E-6		0.116	unit decrease	Affymetrix [427664]	N
986	chr6	52585531	52585532	rs6905523	34815687	Wu SE	2021-11-16	J Inflamm Res	A Genome-Wide Association Study Identifies Novel Risk Loci for Sarcopenia in a Taiwanese Population.	Low hand grip strength	34 Taiwanese ancestry cases, 62 Taiwanese ancestry controls	NA	6p12.2		rs6905523-?	0.349	4E-6		4.848		Affymetrix [NR]	N
986	chr6	52604053	52604054	rs2180312	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p12.2	NR	rs2180312-A	0.4686	1E-9	(GSTA2)	0.3224	NR unit decrease	Illumina [1671387] (imputed)	N
986	chr6	52608059	52608060	rs62405959	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	6p12.2	GSTA7P	rs62405959-T	0.1332	6E-6		0.0479	[0.027-0.069] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
986	chr6	52610583	52610584	rs2207949	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p12.2	NR	rs2207949-T	0.3676	2E-16	(GSTA2)	0.4283	NR unit increase	Illumina [1671387] (imputed)	N
986	chr6	52617730	52617731	rs2180314	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	6p12.2	NR	rs2180314-G	NR	1E-14		0.0187	[0.014-0.023] unit increase	Affymetrix [9000000] (imputed)	N
986	chr6	52617730	52617731	rs2180314	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	6p12.2	NR	rs2180314-G	NR	1E-16		0.0202	[0.015-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
986	chr6	52617730	52617731	rs2180314	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	6p12.2	NR	rs2180314-G	NR	4E-9		0.0142	[0.0095-0.0189] unit decrease	Affymetrix [9000000] (imputed)	N
986	chr6	52617730	52617731	rs2180314	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	6p12.2	NR	rs2180314-G	NR	3E-12		0.0169	[0.012-0.022] unit increase	Affymetrix [9000000] (imputed)	N
986	chr6	52617730	52617731	rs2180314	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	6p12.2	NR	rs2180314-G	NR	3E-9		0.0143	[0.0096-0.019] unit increase	Affymetrix [9000000] (imputed)	N
986	chr6	52617730	52617731	rs2180314	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p12.2	GSTA2	rs2180314-C		2E-16		0.018	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
986	chr6	52622813	52622814	rs2254050	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	6p12.2		rs2254050-?	NR	3E-18				NR [~ 8900000] (imputed)	N
986	chr6	52623094	52623095	rs2608625	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	6p12.2	GSTA2	rs2608625-T	0.645635	2E-16		0.018897548	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
986	chr6	52623489	52623490	rs1009064	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Liver volume	32,860 European ancestry individuals	NA	6p12.2	GSTA2	rs1009064-?	NR	1E-8		0.0414	NR L decrease	Affymetrix [9390170] (imputed)	N
986	chr6	52625793	52625794	rs2608629	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p12.2	NR	rs2608629-G	0.331	2E-32	(GSTA2)	0.6299	NR unit increase	Illumina [1671387] (imputed)	N
986	chr6	52626119	52626120	rs2749008	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	6p12.2	GSTA2	rs2749008-T	NR	3E-8	(EA)			Affymetrix, Illumina [NR] (imputed)	N
986	chr6	52626119	52626120	rs2749008	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	6p12.2	GSTA2	rs2749008-T	NR	1E-12				Affymetrix, Illumina [NR] (imputed)	N
986	chr6	52626119	52626120	rs2749008	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	6p12.2	GSTA2	rs2749008-T	NR	9E-14				Affymetrix, Illumina [NR] (imputed)	N
986	chr6	52626119	52626120	rs2749008	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	6p12.2	GSTA2	rs2749008-T	NR	6E-10	(EA)			Affymetrix, Illumina [NR] (imputed)	N
986	chr6	52626119	52626120	rs2749008	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	6p12.2	GSTA2	rs2749008-T	NR	3E-8		0.012	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
986	chr6	52626119	52626120	rs2749008	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	6p12.2	GSTA2	rs2749008-T	NR	9E-7		0.012	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
986	chr6	52626119	52626120	rs2749008	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	6p12.2	GSTA2	rs2749008-T	NR	9E-7	(EA)			Affymetrix, Illumina [NR] (imputed)	N
986	chr6	52626119	52626120	rs2749008	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	6p12.2	GSTA2	rs2749008-T	NR	2E-7	(EA)			Affymetrix, Illumina [NR] (imputed)	N
986	chr6	52626119	52626120	rs2749008	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	6p12.2	GSTA2	rs2749008-T	NR	1E-6				Affymetrix, Illumina [NR] (imputed)	N
986	chr6	52626119	52626120	rs2749008	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	6p12.2	GSTA2	rs2749008-T	NR	5E-8				Affymetrix, Illumina [NR] (imputed)	N
986	chr6	52626119	52626120	rs2749008	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	6p12.2	GSTA2	rs2749008-T	NR	4E-7	(EA)			Affymetrix, Illumina [NR] (imputed)	N
986	chr6	52627164	52627165	rs2749013	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	6p12.2		rs2749013-G	NR	5E-22		0.0218	[0.017-0.026] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
986	chr6	52628997	52628998	rs4715316	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	6p12.2	NR	rs4715316-T	0.644389	4E-16		0.0086868	[0.0063-0.0111] unit increase	Affymetrix [16582621] (imputed)	N
986	chr6	52628997	52628998	rs4715316	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	6p12.2	NR	rs4715316-T	0.644389	2E-13		0.0086613	[0.0061-0.0112] unit increase	Affymetrix [16582614] (imputed)	N
986	chr6	52629009	52629010	rs4715317	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	6p12.2		rs4715317-T	0.356588	7E-11		0.0267244	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
986	chr6	52629009	52629010	rs4715317	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	6p12.2		rs4715317-G	NR	2E-15		0.0179	[0.013-0.022] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
986	chr6	52629979	52629980	rs6458867	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	6p12.2		rs6458867-G	NR	2E-10		0.0144	[0.0099-0.0189] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
986	chr6	52629979	52629980	rs6458867	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	6p12.2	GSTA2	rs6458867-A	0.356269	3E-8		0.0113728	[0.0074-0.0154] unit decrease	Affymetrix [NR] (imputed)	N
986	chr6	52630152	52630153	rs6458868	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	6p12.2	GSTA2	rs6458868-T	0.6741	5E-13		0.002	[0.0014-0.0026] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
986	chr6	52630152	52630153	rs6458868	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	6p12.2	GSTA2	rs6458868-T	0.6482	2E-12		0.0021	[0.0013-0.0029] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
986	chr6	52630268	52630269	rs6458869	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	6p12.2	RP1-152L7.1	rs6458869-A	0.644138	2E-17		0.0186462	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
986	chr6	52630268	52630269	rs6458869	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	6p12.2	RP1-152L7.1	rs6458869-A	0.644093	4E-19		0.019810632	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
986	chr6	52630268	52630269	rs6458869	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	6p12.2	NR	rs6458869-A	0.64368	2E-17		0.015987	[0.012-0.02] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
986	chr6	52630268	52630269	rs6458869	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	6p12.2	NR	rs6458869-A	0.644051	2E-21		0.018959	[0.015-0.023] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
986	chr6	52630268	52630269	rs6458869	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	6p12.2	GSTA2	rs6458869-C	0.356088	7E-18		0.017906	[0.014-0.022] unit increase	Affymetrix [NR] (imputed)	N
986	chr6	52630268	52630269	rs6458869	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	6p12.2	intergenic	rs6458869-?	NR	1E-12		0.0194	[0.015-0.024] unit increase	Affymetrix [5701386] (imputed)	N
986	chr6	52630268	52630269	rs6458869	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	6p12.2		rs6458869-?	NR	5E-18				NR [~ 8900000] (imputed)	N
986	chr6	52631187	52631188	rs2749029	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p12.2	NR	rs2749029-G	0.692108	6E-16				Affymetrix, Illumina [24246363] (imputed)	N
986	chr6	52631187	52631188	rs2749029	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p12.2	NR	rs2749029-G	0.695159	6E-21				Affymetrix, Illumina [20825802] (imputed)	N
986	chr6	52632212	52632213	rs2608639	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Triglyceride levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	6p12.2	GSTA2, GSTA1	rs2608639-?		1E-9		0.0289	[0.019-0.038] unit increase	Illumina [31500000] (imputed)	N
986	chr6	52632212	52632213	rs2608639	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	6p12.2	NR	rs2608639-C	0.356361	1E-18		0.01733	[0.013-0.021] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
986	chr6	52634152	52634153	rs2749037	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p12.2		rs2749037-T	0.435	4E-17				Affymetrix [10369434] (imputed)	N
986	chr6	52638197	52638197	rs200123908	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	6p12.2		rs200123908-GT	NR	2E-9		0.0115	[0.0078-0.0152] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
986	chr6	52642767	52642768	rs2608652	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	6p12.2	NR	rs2608652-T	0.525165	1E-8		0.0154434	[0.0099-0.0209] unit increase	Affymetrix [16580851] (imputed)	N
986	chr6	52650184	52650185	rs2749044	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	6p12.2		rs2749044-C	0.8751	3E-12		0.0350504	[0.025-0.045] unit decrease	Illumina [13478928] (imputed)	N
986	chr6	52656168	52656169	rs2894802	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	6p12.2		rs2894802-G	NR	2E-15		0.0144	[0.011-0.018] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
986	chr6	52656168	52656169	rs2894802	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	6p12.2	GSTA1	rs2894802-G	0.572889	6E-26		0.023360552	[0.019-0.028] unit increase	Affymetrix [93095623] (imputed)	N
986	chr6	52656168	52656169	rs2894802	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	6p12.2	GSTA1	rs2894802-G	0.572869	3E-22		0.021500243	[0.017-0.026] unit increase	Affymetrix [93095623] (imputed)	N
986	chr6	52656168	52656169	rs2894802	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	6p12.2	GSTA1	rs2894802-G	0.5733	4E-16		0.02995429	[0.023-0.037] unit decrease	Affymetrix [~ 2500000] (imputed)	N
986	chr6	52656168	52656169	rs2894802	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	6p12.2	GSTA1	rs2894802-G	0.5733	3E-14		0.0279643	[0.021-0.035] unit decrease	Affymetrix [~ 2500000] (imputed)	N
986	chr6	52657551	52657552	rs4715326	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p12.2	NR	rs4715326-T	0.636837	2E-31				Affymetrix, Illumina [24558453] (imputed)	N
986	chr6	52658961	52658962	rs1051775	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	6p12.2	GSTA1	rs1051775-T	0.57	2E-8		5.63	z-score increase	Affymetrix [4311822] (imputed)	N
986	chr6	52662152	52662153	rs2290758	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p12.2	GSTA1	rs2290758-A	0.57	7E-69	(Glutathione S-transferase A1, GSTA1.12446.49.3)	0.42	[0.38-0.46] unit increase	Affymetrix [10572788] (imputed)	N
986	chr6	52662886	52662887	rs6423287	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	6p12.2		rs6423287-T	NR	3E-31		0.0247	[0.021-0.029] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
986	chr6	52662886	52662887	rs6423287	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	6p12.2		rs6423287-T	NR	2E-20		0.0165	[0.013-0.02] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
986	chr6	52662886	52662887	rs6423287	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p12.2	NR	rs6423287-T	0.638511	4E-54				Affymetrix, Illumina [24588908] (imputed)	N
986	chr6	52662886	52662887	rs6423287	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	6p12.2	NR	rs6423287-T	0.573207	4E-46		0.026373	[0.023-0.03] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
986	chr6	52663865	52663866	rs9395823	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	6p12.2		rs9395823-A	0.427825	2E-8		0.0229113	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
986	chr6	52668669	52668670	rs3957356	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	6p12.2	NR	rs3957356-C	0.57109	1E-37		0.023953	[0.02-0.028] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
986	chr6	52668669	52668670	rs3957356	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p12.2	NR	rs3957356-T	0.4321	5E-29	(GSTA2)	0.5376	NR unit increase	Illumina [1671387] (imputed)	N
986	chr6	52668686	52668687	rs3957357	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	145,648 East Asian ancestry individuals	NA	6p12.2	NR	rs3957357-A	0.126869	1E-11		0.038517	[0.027-0.05] SD units increase	Affymetrix, Illumina [16710488] (imputed)	N
986	chr6	52669184	52669185	rs4715332	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	6p12.2	GSTA1	rs4715332-A	0.572117	5E-29		0.025351854	[0.021-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
986	chr6	52669184	52669185	rs4715332	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	6p12.2	GSTA1	rs4715332-A	0.572131	1E-25		0.023706429	[0.019-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
986	chr6	52670443	52670444	rs3756982	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p12.2	NR	rs3756982-T	0.638782	2E-38				Affymetrix, Illumina [24653286] (imputed)	N
986	chr6	52684332	52684333	rs2397112	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	6p12.2	NR	rs2397112-A	0.573791	4E-10		0.0161299	[0.011-0.021] unit increase	Affymetrix [16585745] (imputed)	N
986	chr6	52688620	52688621	rs4715340	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	6p12.2	NR	rs4715340-C	0.572686	2E-30		0.02144	[0.018-0.025] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
986	chr6	52690013	52690014	rs56318213	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	6p12.2		rs56318213-A	NR	3E-17		0.0197	[0.015-0.024] unit decrease	Affymetrix, Illumina [20538307] (imputed)	N
987	chr6	52708796	52708797	rs4715354	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p12.2	NR	rs4715354-A	0.4321	8E-16	(GSTA2)	0.4214	NR unit decrease	Illumina [1671387] (imputed)	N
987	chr6	52717764	52717765	rs146253696	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Platelet count	108,208 Japanese ancestry individuals	NA	6p12.2	GSTA5, GSTA3	rs146253696-?	NR	8E-9		0.03938	[0.026-0.053] unit increase novel	Illumina [6108953] (imputed)	N
987	chr6	52725520	52725521	rs3996993	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p12.2	GSTA1, GSTA2, GSTA5	rs3996993-T		1E-20		0.02	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
987	chr6	52725520	52725521	rs3996993	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	6p12.2	RP11-392A23.4	rs3996993-C	0.5282	5E-9		0.02094444	[0.014-0.028] unit increase	Affymetrix [~ 2500000] (imputed)	N
987	chr6	52725786	52725787	rs7740812	33203707	Zheng JS	2020-11-17	Diabetes Care	Plasma Vitamin C and Type 2 Diabetes: Genome-Wide Association Study and Mendelian Randomization Analysis in European Populations.	Vitamin C levels	52,018 European ancestry individuals	NA	6p12.2	GSTA5	rs7740812-G	0.594	2E-9		0.038	[0.026-0.05] unit increase	Affymetrix, Illumina [up to 7933258] (imputed)	N
987	chr6	52728058	52728059	rs7454964	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	6p12.2	NR	rs7454964-T	0.428414	2E-8		0.0171983	[0.011-0.023] unit increase	Affymetrix [16577424] (imputed)	N
987	chr6	52736055	52736056	rs12529923	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p12.2	NR	rs12529923-C	NR	1E-8		0.021	unit increase	Affymetrix [at least 7091467] (imputed)	N
987	chr6	52736055	52736056	rs12529923	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p12.2	NR	rs12529923-C	0.611	3E-8	(EA)	0.021	unit increase	Affymetrix [at least 7091467] (imputed)	N
987	chr6	52738426	52738427	rs12524110	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p12.2	NR	rs12524110-C	0.582506	2E-16				Affymetrix, Illumina [22063850] (imputed)	N
987	chr6	52739536	52739537	rs11752349	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p12.2	NR	rs11752349-A	0.3206	8E-11	(GSTA2)	0.3709	NR unit increase	Illumina [1671387] (imputed)	N
987	chr6	52785559	52785560	rs689167	30153862	Maxwell TJ	2018-08-28	Alzheimers Res Ther	Genome-wide association study for variants that modulate relationships between cerebrospinal fluid amyloid-beta 42, tau, and p-tau levels.	Cerebrospinal fluid t-tau:AB1-42 ratio	3,146 European ancestry individuals	NA	6p12.2	GSTA3, GSTA9P	rs689167-A	0.362	5E-9				Illumina [5088365] (imputed)	N
988	chr6	52834738	52834739	rs142900698	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Nose size	67,023 European ancestry individuals	NA	6p12.2	GSTA3, GSTA4	rs142900698-?	NR	2E-7		0.267	[0.367-0.166] unit decrease	Illumina [12039491] (imputed)	N
988	chr6	52835894	52835895	rs492146	23962720	Speed D	2013-08-19	Hum Mol Genet	A genome-wide association study and biological pathway analysis of epilepsy prognosis in a prospective cohort of newly treated epilepsy.	Epilepsy (remission after treatment)	889 European and unknown ancestry epilepsy cases	NA	6p12.2	GSTA4	rs492146-A	0.52	2E-7		1.7544	[NR]	Illumina [6923995] (imputed)	N
988	chr6	52849481	52849481	rs11444456	31235810	Fung K	2019-06-24	Sci Rep	Genome-wide association study identifies loci for arterial stiffness index in 127,121 UK Biobank participants.	Arterial stiffness index	127,121 European ancestry individuals	NA	6p12.2	GSTA4	rs11444456-C	0.537	9E-7		0.023	[0.013-0.033] unit increase	Affymetrix [~ 10446505] (imputed)	N
988	chr6	52861989	52861990	rs2894808	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	6p12.2		rs2894808-T	0.922	4E-9		0.022	[0.014-0.03] unit decrease	Affymetrix [up to 90000000] (imputed)	N
988	chr6	52890624	52890625	rs222458	26569114	Brown EL	2015-11-16	PLoS One	Genome-Wide Association Study of Staphylococcus aureus Carriage in a Community-Based Sample of Mexican-Americans in Starr County, Texas.	Staphylococcus aureus nasal carriage (intermittent)	97 Mexican American intermittent carrier individuals, 620 Mexican American non-carrier individuals	NA	6p12.1	GSTA4, RN7SK, ICK, RN7SL244, FBXO9	rs222458-A	0.04	9E-6		4.77	[2.39-9.49]	Affymetrix, Illumina [at least 603042] (imputed)	N
988	chr6	52895229	52895230	rs160631	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	6p12.1		rs160631-T	0.261	1E-13		0.01	[0.008-0.012] unit increase	NR [NR] (imputed)	N
988	chr6	52895229	52895230	rs160631	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	6p12.1	NR	rs160631-G	0.731	2E-9		0.017262844	[0.012-0.023] unit decrease	NR [~ 10000000] (imputed)	N
988	chr6	52905500	52905501	rs222452	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	6p12.1	NR	rs222452-C	0.819	2E-13		0.0102614	[0.0075-0.013] unit decrease	NR [9732723] (imputed)	N
988	chr6	52905500	52905501	rs222452	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	6p12.1	NR	rs222452-C	0.818	4E-11		0.0124582	[0.0088-0.0162] unit increase	NR [9732723] (imputed)	N
988	chr6	52946319	52946320	rs222440	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	6p12.1	FBXO9	rs222440-T	0.180171	5E-10		0.0170327	[0.012-0.022] unit decrease	NR [16516521] (imputed)	N
990	chr6	53118234	53118235	rs2493168	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cerebrospinal fluid AB1-42 levels	up to 189 European and other ancestry early mild cognitive impairment cases,  up to 251 European and other ancestry late mild cognitive impairment cases,  up to 121 European and other ancestry Alzheimer's disease cases,  up to 215 European and other ancestry healthy controls	up to 3 European and other ancestry significant memory concern cases,  up to 57 European and other ancestry early mild cognitive impairment cases,   up to 61 European and other ancestry late mild cognitive impairment cases,  up to 62 European and other ancestry Alzheimer's disease cases,  up to 21 European and other ancestry healthy controls	6p12.1	GCM1, ELOVL5	rs2493168-A	0.71	8E-7		0.0653	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
990	chr6	53123117	53123118	rs735860	20363506	Meguro A	2010-04-02	Ophthalmology	Genome-wide association study of normal tension glaucoma: common variants in SRBD1 and ELOVL5 contribute to disease susceptibility.	Glaucoma	305 Japanese ancestry cases, 355 Japanese ancestry controls	NA	6p12.1	ELOVL5	rs735860-C	0.48	4E-6		1.69	[1.36-2.11]	Affymetrix [325947]	N
990	chr6	53127996	53127997	rs9968815	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	6p12.1	ELOVL5	rs9968815-C	0.300981	4E-37		0.030608073	[0.026-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
990	chr6	53128192	53128193	rs7769306	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6p12.1	ELOVL5	rs7769306-C	0.3006	4E-12		0.016441088	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
990	chr6	53131917	53131918	rs9382192	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	6p12.1	ELOVL5	rs9382192-C	0.293989	9E-10		0.014749907	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
990	chr6	53136515	53136516	rs2294861	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p12.1	ELOVL5	rs2294861-T	0.29374	3E-12		0.016882818	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
990	chr6	53136515	53136516	rs2294861	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p12.1	NR	rs2294861-T	0.297372	6E-17				Affymetrix, Illumina [23472807] (imputed)	N
990	chr6	53136515	53136516	rs2294861	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	6p12.1	NR	rs2294861-T	0.294117	4E-20		0.019028	[0.015-0.023] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
990	chr6	53138203	53138204	rs35189966	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	6p12.1		rs35189966-T	NR	3E-12		0.0169	[0.012-0.022] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
990	chr6	53177677	53177678	rs209489	26586795	Phipps AI	2015-11-19	Carcinogenesis	Common genetic variation and survival after colorectal cancer diagnosis: a genome-wide analysis.	Survival in colorectal cancer (distant metastatic)	up to 462 European ancestry cases	up to 435 European ancestry cases	6p12.1	ELOVL5	rs209489-C	0.08	8E-10	(Disease-Specific Survival)	1.83	[1.51-2.22]	Illumina [~ 2700000] (imputed)	N
990	chr6	53177677	53177678	rs209489	26586795	Phipps AI	2015-11-19	Carcinogenesis	Common genetic variation and survival after colorectal cancer diagnosis: a genome-wide analysis.	Survival in colorectal cancer (distant metastatic)	up to 462 European ancestry cases	up to 435 European ancestry cases	6p12.1	ELOVL5	rs209489-C	0.08	4E-9	(Overall Survival)	1.77	[1.46-2.14]	Illumina [~ 2700000] (imputed)	N
990	chr6	53207449	53207450	rs9367523	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	6p12.1	ELOVL5	rs9367523-G	0.300609	2E-12		0.017164165	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
990	chr6	53208057	53208058	rs6936601	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	6p12.1	NR	rs6936601-C	0.698839	3E-16		0.017151	[0.013-0.021] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
990	chr6	53210271	53210272	rs78003666	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial squamous cell lung carcinoma	367 European ancestry cases, 31,563 European ancestry controls	NA	6p12.1	ELOVL5	rs78003666-A	0.016	5E-6		3.26	[1.96-5.41]	Illumina [7959153] (imputed)	N
990	chr6	53211150	53211151	rs9367524	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p12.1	NR	rs9367524-T	0.691051	8E-14				Affymetrix, Illumina [17210439] (imputed)	N
991	chr6	53221182	53221183	rs1533584	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	6p12.1		rs1533584-C	NR	2E-14		0.02	[0.015-0.025] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
991	chr6	53221182	53221183	rs1533584	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	6p12.1	RPL31P28	rs1533584-C	0.300929	2E-11		0.016337184	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
991	chr6	53221981	53221982	rs2115563	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	6p12.1		rs2115563-?	NR	7E-14				NR [~ 8900000] (imputed)	N
991	chr6	53231013	53231014	rs138711232	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	6p12.1	Intergenic	rs138711232-A	0.998	2E-6	(AA)	0.323	NR unit increase	Illumina [NR] (imputed)	N
991	chr6	53231825	53231826	rs148575805	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	6p12.1	Intergenic	rs148575805-A	0.998	2E-6	(AA)	0.322	NR unit increase	Illumina [NR] (imputed)	N
991	chr6	53238365	53238366	rs190310258	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	6p12.1	Intergenic	rs190310258-A	0.998	2E-6	(AA)	0.321	NR unit increase	Illumina [NR] (imputed)	N
991	chr6	53238535	53238536	rs139872551	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	6p12.1	Intergenic	rs139872551-C	0.997	3E-6	(AA)	0.297	NR unit increase	Illumina [NR] (imputed)	N
991	chr6	53240834	53240835	rs150978385	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	6p12.1	Intergenic	rs150978385-T	0.997	3E-6	(AA)	0.317	NR unit increase	Illumina [NR] (imputed)	N
991	chr6	53241615	53241616	rs139078029	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	6p12.1	Intergenic	rs139078029-T	0.997	3E-6	(AA)	0.317	NR unit increase	Illumina [NR] (imputed)	N
991	chr6	53242476	53242477	rs141925252	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	6p12.1	Intergenic	rs141925252-G	0.997	3E-6	(AA)	0.317	NR unit increase	Illumina [NR] (imputed)	N
991	chr6	53246189	53246190	rs185126447	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	6p12.1	Intergenic	rs185126447-A	0.997	2E-6	(AA)	0.318	NR unit increase	Illumina [NR] (imputed)	N
991	chr6	53256079	53256080	rs147558739	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	6p12.1	Intergenic	rs147558739-T	0.998	4E-6	(AA)	0.314	NR unit increase	Illumina [NR] (imputed)	N
991	chr6	53270554	53270555	rs182332476	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	6p12.1	Intergenic	rs182332476-G	0.999	3E-6	(AA)	0.283	unit increase	Illumina [NR] (imputed)	N
991	chr6	53307693	53307694	rs9395865	22554406	Kang SJ	2012-05-03	Genes Brain Behav	Family-based genome-wide association study of frontal ? oscillations identifies potassium channel gene KCNJ6.	Electroencephalographic traits in alcoholism	1,560 European ancestry individuals from 117 families	NA	6p12.1	intergenic	rs9395865-T	0.279	6E-6		0.106	[NR] unit increase	Illumina [634583]	N
991	chr6	53326980	53326981	rs7758711	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6p12.1	ELOVL5	rs7758711-?	NR	6E-6	(glycocholate)	0.24419296	[0.14-0.35] unit increase	Affymetrix [at least 2500000] (imputed)	N
992	chr6	53349400	53349401	rs7744700	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	6p12.1	GCLC	rs7744700-T	0.710508	2E-11		0.01985	[0.014-0.026] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
992	chr6	53349400	53349401	rs7744700	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6p12.1		rs7744700-?	NR	3E-19				NR [~ 8900000] (imputed)	N
992	chr6	53406350	53406351	rs534957	30988330	Hellwege JN	2019-04-15	Sci Rep	Heritability and genome-wide association study of benign prostatic hyperplasia (BPH) in the eMERGE network.	Benign prostatic hyperplasia	2,258 European ancestry cases, 398 African and unknown ancestry cases, 6,599 European ancestry controls, 1,164 African and unknown ancestry controls	NA	6p12.1	GCLC	rs534957-C	0.35	5E-7		1.26	[1.17-1.36]	Affymetrix, Illumina [10973920] (imputed)	N
992	chr6	53406350	53406351	rs534957	30988330	Hellwege JN	2019-04-15	Sci Rep	Heritability and genome-wide association study of benign prostatic hyperplasia (BPH) in the eMERGE network.	Benign prostatic hyperplasia	2,258 European ancestry cases, 398 African and unknown ancestry cases, 6,599 European ancestry controls, 1,164 African and unknown ancestry controls	NA	6p12.1	GCLC	rs534957-C	0.35	5E-6	(EA)	1.24	NR	Affymetrix, Illumina [10973920] (imputed)	N
992	chr6	53422173	53422174	rs182755388	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	6p12.1	GCLC	rs182755388-T	0.0068	9E-6		0.2504	[0.14-0.36] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
992	chr6	53422173	53422174	rs182755388	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	6p12.1	GCLC	rs182755388-T	0.0068	9E-6		0.2504	[0.14-0.36] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
992	chr6	53423407	53423408	rs72942533	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Daytime sleep phenotypes	874 European ancestry individuals	NA	6p12.1	GCLC, RP1-27K12.2, KLHL31, ELOVL5	rs72942533-G	NR	4E-6	(daytime resting duration, weekdays)	0.3177	[0.18-0.45] unit increase	Affymetrix [7141204] (imputed)	N
992	chr6	53443268	53443269	rs809942	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	6p12.1		rs809942-A	NR	2E-9		0.0147	[0.0098-0.0196] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
992	chr6	53443268	53443269	rs809942	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	6p12.1	RP1-27K12.2, GCLC	rs809942-A	0.197592	8E-14		0.020845404	[0.015-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
992	chr6	53443925	53443926	rs632497	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	6p12.1	RP1-27K12.2, GCLC	rs632497-G	0.197556	2E-12		0.019569406	[0.014-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
992	chr6	53444318	53444319	rs644492	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p12.1	NR	rs644492-G	0.217539	2E-16				Affymetrix, Illumina [23467995] (imputed)	N
992	chr6	53444318	53444319	rs644492	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	6p12.1	NR	rs644492-G	0.195876	2E-17		0.020069	[0.015-0.025] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
992	chr6	53471240	53471241	rs681554	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x short total sleep time interaction (2df test)	2,974 African American short sleepers, 365 Chinese ancestry short sleepers, 110 Asian ancestry short sleepers, at least 8,230 European ancestry short sleepers, 1,079 Hispanic/Latino short sleepers, 11,801 African American controls, 1,425 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,097 European ancestry controls, 4,023 Hispanic/Latino controls	at least 214 African American short sleepers, 629 East Asian ancestry short sleepers, up to 6,761 European ancestry short sleepers, 2,473 Hispanic short sleepers, at least 913 African American controls, 2,504 East Asian ancestry controls, up to 26,764 European ancestry controls, 9,854 Hispanic controls	6p12.1	KLHL31	rs681554-?	NR	7E-11		0.8796	[0.48-1.28] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
993	chr6	53486822	53486823	rs72937266	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	6p12.1	RP1-27K12.2	rs72937266-G	NR	4E-9		0.0630601	[0.042-0.084] unit increase	Affymetrix [321788] (imputed)	N
993	chr6	53497221	53497222	rs1326543	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	6p12.1	intergenic	rs1326543-A	0.756	5E-9		0.0144	[0.0095-0.0193] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
993	chr6	53508743	53508744	rs13213536	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	6p12.1	KLHL31	rs13213536-T	0.263512	2E-12		0.017957255	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
993	chr6	53509451	53509452	rs12665537	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	6p12.1	intergenic	rs12665537-?	NR	3E-11		0.0181	[0.013-0.023] unit increase	Affymetrix [5701386] (imputed)	N
993	chr6	53514945	53514946	rs9474614	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6p12.1	KLHL31	rs9474614-G	0.224	6E-6	(Total T4 )	0.03	[NR] ug/dL increase	Illumina [899892]	N
993	chr6	53515482	53515483	rs6942249	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p12.1	KLHL31	rs6942249-A	NR	4E-8		0.0189614	[0.012-0.026] unit decrease	Affymetrix [321016] (imputed)	N
993	chr6	53519604	53519605	rs3799260	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels adjusted for BMI	56,708 European ancestry, African American or Afro-Caribbean, East Asian ancestry, Hispanic or Latin American individuals		6p12.1	KLHL31	rs3799260-T	0.822	4E-6		0.036	[0.02-0.052] unit decrease	Illumina [232237]	N
993	chr6	53519604	53519605	rs3799260	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels adjusted for BMI	56,708 European ancestry, African American or Afro-Caribbean, East Asian ancestry, Hispanic or Latin American individuals		6p12.1	KLHL31	rs3799260-T	0.822	2E-6		0.044	[0.026-0.062] unit decrease	Illumina [92057]	N
993	chr6	53519604	53519605	rs3799260	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels adjusted for BMI	49,830 European ancestry individuals		6p12.1	KLHL31	rs3799260-T	0.818	4E-6		0.038	[0.022-0.054] unit decrease	Illumina [204609]	N
993	chr6	53519604	53519605	rs3799260	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels adjusted for BMI	49,830 European ancestry individuals		6p12.1	KLHL31	rs3799260-T	0.818	1E-6		0.047	[0.027-0.067] unit decrease	Illumina [54056]	N
993	chr6	53519604	53519605	rs3799260	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels adjusted for BMI	32,886 European ancestry, African American or Afro-Caribbean, East Asian ancestry, Hispanic or Latin American women		6p12.1	KLHL31	rs3799260-T	0.825	1E-7		0.063	[0.039-0.087] unit decrease	Illumina [86054]	N
993	chr6	53519604	53519605	rs3799260	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels adjusted for BMI	32,886 European ancestry, African American or Afro-Caribbean, East Asian ancestry, Hispanic or Latin American women		6p12.1	KLHL31	rs3799260-T	0.825	1E-7		0.055	[0.035-0.075] unit decrease	Illumina [227473]	N
993	chr6	53519604	53519605	rs3799260	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels adjusted for BMI	27,947 European ancestry women		6p12.1	KLHL31	rs3799260-T	0.818	2E-7		0.066	[0.041-0.091] unit decrease	Illumina [49530]	N
993	chr6	53519604	53519605	rs3799260	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels adjusted for BMI	27,947 European ancestry women		6p12.1	KLHL31	rs3799260-T	0.818	2E-7		0.057	[0.035-0.079] unit decrease	Illumina [193169]	N
993	chr6	53520123	53520124	rs2038940	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	6p12.1	KLHL31	rs2038940-A	NR	4E-13		0.026435	[0.019-0.034] unit increase	Affymetrix [321788] (imputed)	N
993	chr6	53520123	53520124	rs2038940	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p12.1	KLHL31	rs2038940-A	NR	3E-12		0.0245054	[0.018-0.031] unit increase	Affymetrix [321016] (imputed)	N
993	chr6	53523633	53523634	rs79905210	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	6p12.1	KLHL31	rs79905210-C	NR	2E-21		0.0497552	[0.04-0.06] unit increase	Affymetrix [321788] (imputed)	N
993	chr6	53536379	53536379	rs559527340	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p12.1	KLHL31	rs559527340-TC	NR	2E-16		0.0439281	[0.033-0.054] unit increase	Affymetrix [321016] (imputed)	N
993	chr6	53539019	53539020	rs4286780	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6p12.1	LRRC1	rs4286780-?	NR	7E-6	(SM 22:1)	0.42123795	[0.24-0.61] unit increase	Affymetrix [at least 2500000] (imputed)	N
993	chr6	53540334	53540335	rs7739232	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p12.1	KLHL31	rs7739232-A	0.0729	1E-8	(EA, women)	0.063	[0.041-0.085] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
993	chr6	53544567	53544568	rs74331973	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	6p12.1	KLHL31	rs74331973-C	NR	8E-12		0.0346177	[0.025-0.045] unit decrease	Affymetrix [321788] (imputed)	N
993	chr6	53544567	53544568	rs74331973	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p12.1	KLHL31	rs74331973-C	NR	1E-10		0.0313447	[0.022-0.041] unit decrease	Affymetrix [321016] (imputed)	N
993	chr6	53585031	53585032	rs4312987	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder in trauma exposed individuals	13,393 European ancestry cases, 10,701 European ancestry controls		6p12.1	NR	rs4312987-T	0.592484	2E-6		1.13	[1.08-1.18]	Affymetrix [7791636] (imputed)	N
994	chr6	53617729	53617730	rs12213392	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	6p12.1	LRRC1	rs12213392-T	0.569638	1E-22		0.0181293	[0.014-0.022] unit increase	NR [13737936] (imputed)	N
994	chr6	53617729	53617730	rs12213392	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	6p12.1		rs12213392-?	NR	8E-20				NR [~ 8900000] (imputed)	N
994	chr6	53653634	53653635	rs9382235	34177493	Mountford HS	2021-06-09	Front Hum Neurosci	Genome-Wide Association Study of Motor Coordination.	Motor coordination	4,542 European ancestry children	NA	6p12.1	KLHL31, LRRC1	rs9382235-T	NR	9E-6		0.7731	[0.43-1.11] unit increase	Illumina [4774020] (imputed)	N
995	chr6	53762091	53762092	rs9349688	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Pulse pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 Japanese ancestry individuals	6p12.1	NR	rs9349688-A	0.7247	5E-8	(East Asian)	0.2671	[0.17-0.36] unit decrease	Illumina [6200000] (imputed)	N
995	chr6	53789019	53789020	rs74425672	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	6p12.1	LRRC1	rs74425672-A	NR	5E-8		0.0554637	[0.036-0.075] unit increase	Affymetrix [321788] (imputed)	N
995	chr6	53789829	53789830	rs9370243	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	6p12.1	NR	rs9370243-G	0.8339	1E-10		0.0394	[0.027-0.051] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
995	chr6	53789829	53789830	rs9370243	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	6p12.1	NA	rs9370243-T	0.0804	1E-9		0.0198	[0.014-0.026] unit increase	NR [~ 27400000] (imputed)	N
995	chr6	53832347	53832348	rs72951456	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	6p12.1		rs72951456-T	NR	3E-8		0.0264	[0.017-0.036] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
995	chr6	53866265	53866266	rs9464011	32595297	Kweon K	2018-04-01	Soa Chongsonyon Chongsin Uihak	Genome-Wide Analysis Reveals Four Novel Loci for Attention-Deficit Hyperactivity Disorder in Korean Youths.	Attention deficit hyperactivity disorder (hyperactivity-impulsivity symptoms)	27 Korean ancestry child sibling pairs	NA	6p12.1	MLIP	rs9464011-C	0.102	7E-7				Affymetrix [432921]	N
996	chr6	53899087	53899088	rs142295881	29325848	Martin J	2017-12-02	Biol Psychiatry	A Genetic Investigation of Sex Bias in the Prevalence of Attention-Deficit/Hyperactivity Disorder.	Attention deficit hyperactivity disorder	4,945 European ancestry female cases, 16,246 European ancestry female controls	NA	6p12.1	MLIP	rs142295881-A	NR	1E-6	(females)	0.465	[0.28-0.65] unit decrease	Illumina [7531543] (imputed)	N
996	chr6	53901328	53901329	rs4715438	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	6p12.1		rs4715438-A	NR	2E-9		0.0105	[0.0072-0.0138] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
996	chr6	53901328	53901329	rs4715438	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	6p12.1		rs4715438-A	NR	8E-9		0.0115	[0.0076-0.0154] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
996	chr6	53902842	53902843	rs7450517	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	6p12.1	MLIP-AS1	rs7450517-G	0.31073	2E-17		0.00217403	[0.0017-0.0027] unit increase	Affymetrix [13995440] (imputed)	N
996	chr6	53903151	53903152	rs9637973	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	6p12.1	MLIP	rs9637973-G	0.31	4E-10		6.27	z-score increase	Affymetrix [4312306] (imputed)	N
996	chr6	53903151	53903152	rs9637973	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Gamma glutamyl transferase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	6p12.1	MLIP	rs9637973-?		4E-19		0.0364	[0.028-0.044] unit increase	Illumina [31500000] (imputed)	N
996	chr6	53903151	53903152	rs9637973	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Gamma glutamyl transferase levels	118,309 Japanese ancestry individuals	NA	6p12.1	MLIP	rs9637973-?	NR	5E-17		0.03456	[0.026-0.043] unit decrease novel	Illumina [6108953] (imputed)	N
996	chr6	53911068	53911068	rs35949865	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	6p12.1		rs35949865-CT	NR	3E-15		0.0214	[0.016-0.027] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
996	chr6	53924169	53924170	rs7750294	33824429	Fjukstad KK	2021-04-06	Pharmacogenomics J	Genetic variants associated with cardiometabolic abnormalities during treatment with selective serotonin reuptake inhibitors: a genome-wide association study.	LDL levels x SSRI defined daily dose interaction in schizophrenia or bipolar disorder	1,180 European ancestry individuals	NA	6p12.1	MLIP:MLIP-AS1	rs7750294-T	NR	1E-8		0.795648	[0.52-1.07] unit increase	Illumina [NR] (imputed)	N
996	chr6	53924696	53924697	rs9296736	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	6p12.1	MLIP-AS1	rs9296736-T	0.310277	2E-73		0.0101331	[0.009-0.0112] unit increase	Affymetrix [13995440] (imputed)	N
996	chr6	53924696	53924697	rs9296736	22001757	Chambers JC	2011-10-16	Nat Genet	Genome-wide association study identifies loci influencing concentrations of liver enzymes in plasma.	Liver enzyme levels (gamma-glutamyl transferase)	Up to 52,350 European ancestry individuals, up to 8,739 Indian Asian ancestry individuals	NA	6p12.1	MLIP	rs9296736-T	0.31	3E-9		3.0	[2.10-4.00] % increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
996	chr6	53928519	53928519	rs368630379	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	6p12.1		rs368630379-CGT	NR	2E-8		0.0209	[0.014-0.028] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
996	chr6	53939723	53939724	rs9349693	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	133,471 East Asian ancestry individuals	NA	6p12.1		rs9349693-G	0.473513	4E-19		0.0310546	[0.024-0.038] unit decrease	Illumina [13476165] (imputed)	N
996	chr6	53942184	53942185	rs7742515	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	6p12.1	MLIP	rs7742515-T	0.2	6E-10		6.2	z-score increase	Affymetrix [4311822] (imputed)	N
996	chr6	53957587	53957588	rs625899	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	6p12.1		rs625899-C	NR	1E-75		0.0366	[0.033-0.041] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
996	chr6	53957587	53957588	rs625899	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	6p12.1		rs625899-C	NR	5E-12		0.0137	[0.0098-0.0176] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
996	chr6	53957587	53957588	rs625899	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	6p12.1	MLIP	rs625899-T	0.305312	3E-13		0.0031738	[0.0023-0.004] unit increase	Affymetrix [13995440] (imputed)	N
996	chr6	53957587	53957588	rs625899	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	6p12.1	NR	rs625899-C	NR	5E-9		0.0153	[0.01-0.02] unit increase	Affymetrix [9000000] (imputed)	N
996	chr6	53975912	53975913	rs499594	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	6p12.1	MLIP	rs499594-C	0.6926	2E-8		0.1479	[0.096-0.2] mmHg decrease	Affymetrix [NR] (imputed)	N
996	chr6	53977494	53977495	rs670463	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	6p12.1	MLIP	rs670463-A		2E-6		0.187	unit decrease	Affymetrix [at least 2696785] (imputed)	N
996	chr6	53977494	53977495	rs670463	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	6p12.1	MLIP	rs670463-A		2E-9		0.158	unit decrease	Affymetrix [at least 2696785] (imputed)	N
996	chr6	53995503	53995504	rs816366	31409800	Pazoki R	2019-08-13	Nat Commun	GWAS for urinary sodium and potassium excretion highlights pathways shared with cardiovascular traits.	Urinary sodium excretion	446,237 European ancestry individuals	7,612 African ancestry individuals, 10,095 South Asian ancestry individuals	6p12.1	LOC105378330	rs816366-C	0.311488	1E-13	(EA)	0.00987744	[0.0073-0.0125] unit increase	Affymetrix [~ 8800000] (imputed)	N
996	chr6	53995541	53995542	rs816367	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	6p12.1	NA	rs816367-C	0.6491	1E-9		0.0107	[0.0074-0.014] unit decrease	NR [~ 27400000] (imputed)	N
996	chr6	53997692	53997693	rs816372	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	6p12.1		rs816372-C	NR	2E-9		0.0126	[0.0085-0.0167] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
997	chr6	54003051	54003052	rs142516820	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Glomerular filtration rate	143,658 Japanese ancestry individuals	NA	6p12.1	NR	rs142516820-?	NR	1E-12		0.0953	[0.069-0.121] unit decrease novel	Illumina [6108953] (imputed)	N
997	chr6	54003051	54003052	rs142516820	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Creatinine levels	142,097 Japanese ancestry individuals	NA	6p12.1	MLIP	rs142516820-?	NR	1E-13		0.09646	[0.071-0.122] unit increase novel	Illumina [6108953] (imputed)	N
997	chr6	54047351	54047352	rs76810707	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p12.1	MLIP	rs76810707-T	0.0061	2E-6		1.143	[0.67-1.62] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
997	chr6	54060982	54060983	rs76156646	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Hepatitis B	1,425 European ancestry cases, 218,180 European ancestry controls	NA	6p12.1	NR	rs76156646-?	NR	5E-6		0.5661	[0.34-0.79] unit increase	Illumina [at least 560000] (imputed)	N
997	chr6	54096150	54096151	rs1342831	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	6p12.1	MLIP	rs1342831-T	0.942918	9E-14		0.0224824	[0.017-0.028] unit decrease	Affymetrix [12370749]	N
998	chr6	54176226	54176227	rs10948810	29855589	Chernus J	2018-05-31	Sci Rep	GWAS reveals loci associated with velopharyngeal dysfunction.	Velopharyngeal dysfunction	54 Hispanic or Latin American and unknown ancestry cases, 922 Hispanic or Latin American and unknown ancestry controls	NA	6p12.1	NR	rs10948810-?	NR	4E-7		0.09837478	[NR] unit decrease	Illumina [at least 269494] (imputed)	N
998	chr6	54254588	54254589	rs3736352	27958378	Floyd JS	2016-12-13	Pharmacogenomics J	Large-scale pharmacogenomic study of sulfonylureas and the QT, JT and QRS intervals: CHARGE Pharmacogenomics Working Group.	QRS interval (sulfonylurea treatment interaction)	2,095 European ancestry exposed individuals, 42,907 European ancestry unexposed individuals, 1,167 African American exposed individuals, 10,564 African American unexposed individuals, 794 Hispanic/Latino American exposed individuals, 14,330 Hispanic/Latino American unexposed individuals	NA	6p12.1	TINAG	rs3736352-?	NR	3E-7		2.7	[1.72-3.68] ms increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
999	chr6	54265395	54265396	rs16885294	20923822	Niu N	2010-10-05	Genome Res	Radiation pharmacogenomics: a genome-wide association approach to identify radiation response biomarkers using human lymphoblastoid cell lines.	Radiation response	93 African American human lymphoblastoid cell lines, 89 European ancestry human lymphoblastoid cell lines, 95 Han Chinese ancestry human lymphoblastoid cell lines	NA	6p12.1	TINAG	rs16885294-?	0.07	4E-7				Affymetrix, Illumina [1348798]	N
999	chr6	54388119	54388120	rs116251883	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	6p12.1	NR	rs116251883-?	NR	4E-6		0.0079029	[0.0046-0.0112] unit decrease	Affymetrix [805426] (imputed)	N
1000	chr6	54467266	54467267	rs1951694	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	6p12.1	intergenic	rs1951694-A	NR	7E-6	(AA)			Illumina [up to 11995908] (imputed)	N
1000	chr6	54508400	54508401	rs971199	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	6p12.1	NR	rs971199-?	NR	1E-10				Affymetrix [NR]	N
1001	chr6	54546300	54546301	rs61375854	31409800	Pazoki R	2019-08-13	Nat Commun	GWAS for urinary sodium and potassium excretion highlights pathways shared with cardiovascular traits.	Urinary potassium excretion	446,230 European ancestry individuals	7,612 African ancestry individuals, 10,095 South Asian ancestry individuals	6p12.1	FAM83B	rs61375854-T	0.666305	3E-9	(EA)	0.00752992	[0.005-0.01] unit decrease	Affymetrix [~ 8800000] (imputed)	N
1001	chr6	54595344	54595345	rs36086007	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	6p12.1	NR	rs36086007-?	NR	6E-6		0.0076989	[0.0044-0.011] unit decrease	Affymetrix [805426] (imputed)	N
1001	chr6	54596754	54596755	rs112647602	30552317	Guo W	2018-12-14	Transl Psychiatry	Exploratory genome-wide association analysis of response to ketamine and a polygenic analysis of response to scopolamine in depression.	Response to ketamine in bipolar disorder or major depression (antidepressant effects)	157 European ancestry individuals	NA	6p12.1	KRASP1	rs112647602-G	0.7875	5E-6		23.135	[13.6-32.67] unit decrease	Illumina [~ 6000000] (imputed)	N
1001	chr6	54603848	54603849	rs9464130	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p12.1	NR	rs9464130-G	0.116	4E-6	(IFNalpha_ABC_of_monocytes)			Illumina [5084123] (imputed)	N
1001	chr6	54625814	54625815	rs16885979	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Daytime sleep phenotypes	874 European ancestry individuals	NA	6p12.1	KRASP1, FAM83B	rs16885979-G	NR	8E-8	(daytime resting)	2.072	[1.32-2.83] unit decrease	Affymetrix [7141204] (imputed)	N
1001	chr6	54646552	54646553	rs35982802	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	6p12.1	TINAG, FAM83B	rs35982802-A	0.0553	6E-14		1.0607		Affymetrix [11880941] (imputed)	N
1001	chr6	54653539	54653540	rs6935502	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Subjective well-being	298,420 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	6p12.1	NR	rs6935502-C	0.4192	3E-6		0.014354602	[0.0084-0.0203] unit decrease	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
1002	chr6	54663167	54663168	rs7452200	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	6p12.1		rs7452200-?	NR	1E-15				NR [~ 8900000] (imputed)	N
1002	chr6	54688130	54688131	rs6922162	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Coronary artery disease in diabetes	361 Korean ancestry cases, 4,951 Korean ancestry controls	NA	6p12.1		rs6922162-A	0.1772	8E-6		1.515	[1.262-1.817]	Affymetrix [7975321] (imputed)	N
1002	chr6	54723844	54723845	rs1021836	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	6p12.1		rs1021836-?	NR	8E-8				NR [~ 8900000] (imputed)	N
1002	chr6	54726850	54726851	rs924712	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p12.1	NR	rs924712-G	0.579	4E-6	(EA)	0.0291	[0.017-0.041] unit increase	Illumina [~ 11800000] (imputed)	N
1002	chr6	54730343	54730344	rs1155750	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal cancer	978 Austrian ancestry colorectal cancer cases, 636 Austrian ancestry advanced colorectal adenoma cases, , 855 Austrian ancestry controls	NA	6p12.1	Intergenic	rs1155750-?		9E-6		1.4334862	[NR]	Affymetrix [492217] (imputed)	N
1002	chr6	54748218	54748219	rs11969918	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	6p12.1		rs11969918-A	0.431	2E-9		0.013	[0.0091-0.0169] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
1002	chr6	54756307	54756308	rs988913	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	6p12.1	FAM83B, HCRTR2	rs988913-C	0.66	1E-12		0.04	[0.03-0.05] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
1002	chr6	54764319	54764320	rs4715491	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	6p12.1	FAM83B	rs4715491-G	0.22460000000000002	2E-14		1.0332713		Affymetrix [11880941] (imputed)	N
1002	chr6	54764319	54764320	rs4715491	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Glomerular filtration rate	143,658 Japanese ancestry individuals	NA	6p12.1	FAM83B	rs4715491-?	NR	1E-13		0.03373	[0.025-0.043] unit decrease novel	Illumina [6108953] (imputed)	N
1002	chr6	54764319	54764320	rs4715491	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Creatinine levels	142,097 Japanese ancestry individuals	NA	6p12.1	NR	rs4715491-?	NR	5E-13		0.03202	[0.023-0.041] unit increase novel	Illumina [6108953] (imputed)	N
1002	chr6	54764319	54764320	rs4715491	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Blood urea nitrogen levels	139,818 Japanese ancestry individuals	NA	6p12.1	FAM83B	rs4715491-?	NR	3E-13		0.03139	[0.023-0.04] unit increase novel	Illumina [6108953] (imputed)	N
1002	chr6	54764319	54764320	rs4715491	26835600	Hu Y	2016-02-02	Nat Commun	GWAS of 89,283 individuals identifies genetic variants associated with self-reporting of being a morning person.	Morning vs. evening chronotype	38,937 European ancestry morning chronotype individuals, 50,346 European ancestry evening chronotype individuals	NA	6p12.1	NR	rs4715491-?	NR	4E-6				Illumina [7427422] (imputed)	N
1003	chr6	54825686	54825687	rs9382403	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Subjective well-being	298,420 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	6p12.1	NR	rs9382403-A	0.6531	1E-6		0.0134	[0.008-0.0188] unit increase	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
1003	chr6	54880467	54880468	rs13208701	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	6p12.1	FAM83B, HCRTR2	rs13208701-A	0.3534	6E-19		1.0334		Affymetrix [11880941] (imputed)	N
1004	chr6	54937973	54937974	rs9382445	30846698	Dashti HS	2019-03-07	Nat Commun	Genome-wide association study identifies genetic loci for self-reported habitual sleep duration supported by accelerometer-derived estimates.	Sleep duration	446,118 European ancestry individuals	47,180  adults, 10,554 children or adolescents	6p12.1	NR	rs9382445-T	NR	6E-11		0.846	unit increase	Affymetrix [14661600] (imputed)	N
1004	chr6	54973760	54973761	rs4715517	34719683	Park JS	2021-11-01	J Hum Genet	Genome-wide meta-analysis revealed several genetic loci associated with serum uric acid levels in Korean population: an analysis of Korea Biobank data.	Serum uric acid levels	60,585 Korean ancestry individuals	NA	6p12.1		rs4715517-A	0.05	2E-13		0.0952	increase	NR [7104359] (imputed)	N
1004	chr6	54973760	54973761	rs4715517	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	6p12.1		rs4715517-A	NR	1E-21		0.071	[0.056-0.086] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
1004	chr6	54973760	54973761	rs4715517	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	129,405 East Asian ancestry individuals	NA	6p12.1		rs4715517-A	0.067444	1E-21		0.0709677	[0.056-0.086] unit increase	Illumina [13475706] (imputed)	N
1004	chr6	54973760	54973761	rs4715517	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	6p12.1		rs4715517-A	NR	3E-53		0.0927	[0.081-0.104] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
1004	chr6	54973760	54973761	rs4715517	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	150,266 East Asian ancestry individuals	NA	6p12.1		rs4715517-A	0.06736	3E-53		0.0927008	[0.081-0.105] unit increase	Illumina [13478778] (imputed)	N
1004	chr6	54973760	54973761	rs4715517	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	6p12.1		rs4715517-A	NR	3E-21		0.0624	[0.049-0.075] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
1004	chr6	54973760	54973761	rs4715517	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	153,512 East Asian ancestry individuals	NA	6p12.1		rs4715517-A	0.067664	3E-21		0.0624458	[0.05-0.075] unit decrease	Illumina [13479135] (imputed)	N
1004	chr6	54973760	54973761	rs4715517	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	6p12.1		rs4715517-A	NR	1E-16		0.0536	[0.041-0.066] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
1004	chr6	54973760	54973761	rs4715517	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	152,447 East Asian ancestry individuals	NA	6p12.1		rs4715517-A	0.067857	2E-16		0.0535613	[0.041-0.066] unit decrease	Illumina [13478948] (imputed)	N
1004	chr6	54973760	54973761	rs4715517	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	6p12.1		rs4715517-A	NR	4E-18		0.0574	[0.044-0.07] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
1004	chr6	54973760	54973761	rs4715517	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	153,015 East Asian ancestry individuals	NA	6p12.1		rs4715517-A	0.067601	4E-18		0.0574237	[0.044-0.07] unit decrease	Illumina [13478961] (imputed)	N
1004	chr6	54973760	54973761	rs4715517	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	6p12.1		rs4715517-A	NR	3E-51		0.1075	[0.094-0.121] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
1004	chr6	54973760	54973761	rs4715517	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	148,767 East Asian ancestry individuals	NA	6p12.1		rs4715517-A	0.067268	3E-51		0.107474	[0.093-0.121] unit increase	Illumina [13478792] (imputed)	N
1004	chr6	54973760	54973761	rs4715517	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p12.1	NR	rs4715517-C	0.981932	2E-13				Affymetrix, Illumina [24332387] (imputed)	N
1004	chr6	54973760	54973761	rs4715517	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	150,708 East Asian ancestry individuals	NA	6p12.1	NR	rs4715517-C	0.923939	4E-15		0.063139	[0.047-0.079] SD units increase	Affymetrix, Illumina [16709798] (imputed)	N
1004	chr6	54973760	54973761	rs4715517	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p12.1	NR	rs4715517-C	0.982001	3E-10				Affymetrix, Illumina [24653286] (imputed)	N
1004	chr6	54973760	54973761	rs4715517	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	149,861 East Asian ancestry individuals	NA	6p12.1	NR	rs4715517-C	0.923945	1E-10		0.05186	[0.036-0.068] SD units increase	Affymetrix, Illumina [16709126] (imputed)	N
1004	chr6	54973760	54973761	rs4715517	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p12.1	NR	rs4715517-C	0.982516	3E-11				Affymetrix, Illumina [24558453] (imputed)	N
1004	chr6	54973760	54973761	rs4715517	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	142,940 East Asian ancestry individuals	NA	6p12.1	NR	rs4715517-C	0.923521	7E-12		0.056058	[0.04-0.072] SD units increase	Affymetrix, Illumina [16289021] (imputed)	N
1004	chr6	55018459	55018460	rs9370391	31263163	Liu CT	2019-07-01	Sci Rep	Genome-wide Association Study of Change in Fasting Glucose over time in 13,807 non-diabetic European Ancestry Individuals.	Fasting glucose change (long-term)	3,669 European ancestry individuals	NA	6p12.1	HCRTR2	rs9370391-T	0.01	3E-7		0.948	[0.59-1.31] unit decrease	Affymetrix, Illumina [~ 25000000] (imputed)	N
1004	chr6	55021560	55021561	rs35833281	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	6p12.1	FAM83B, HCRTR2	rs35833281-C	0.2296	2E-31		1.0501		Affymetrix [11880941] (imputed)	N
1004	chr6	55021560	55021561	rs35833281	26835600	Hu Y	2016-02-02	Nat Commun	GWAS of 89,283 individuals identifies genetic variants associated with self-reporting of being a morning person.	Morning vs. evening chronotype	38,937 European ancestry morning chronotype individuals, 50,346 European ancestry evening chronotype individuals	NA	6p12.1	HCRTR2, OX2R	rs35833281-C	0.21	4E-9		1.0869565		Illumina [7427422] (imputed)	N
1004	chr6	55033197	55033198	rs79986767	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Urolithiasis	6,223 European ancestry cases, 482,123 European ancestry controls, 11,699 East Asian ancestry cases, 167,027 East Asian ancestry controls	NA	6p12.1		rs79986767-C	NR	2E-8		0.1446	[0.094-0.195] unit decrease	Affymetrix, Illumina [25845211] (imputed)	N
1004	chr6	55033197	55033198	rs79986767	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Urolithiasis	11,699 East Asian ancestry cases, 167,027 East Asian ancestry controls	NA	6p12.1		rs79986767-C	0.09195011	3E-8		0.14354225	[0.093-0.194] unit decrease	Illumina [13429980] (imputed)	N
1004	chr6	55035683	55035684	rs144870624	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	6p12.1		rs144870624-T	0.97588	2E-8		0.039	[0.025-0.053] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
1004	chr6	55040289	55040290	rs9367621	30846698	Dashti HS	2019-03-07	Nat Commun	Genome-wide association study identifies genetic loci for self-reported habitual sleep duration supported by accelerometer-derived estimates.	Sleep duration (short sleep)	106,192  European ancestry cases, 305,742 European ancestry controls	47,180  adults, 10,554 children or adolescents	6p12.1	HCRTR2	rs9367621-T	NR	2E-8		1.024		NR [14661600] (imputed)	N
1004	chr6	55043235	55043236	rs4454139	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	6p12.1	HCRTR2	rs4454139-A	0.212	3E-8		0.0048	[0.003-0.0066] unit increase	Affymetrix, Illumina [8176554] (imputed)	N
1005	chr6	55056367	55056368	rs3122163	27992416	Lane JM	2016-12-19	Nat Genet	Genome-wide association analyses of sleep disturbance traits identify new loci and highlight shared genetics with neuropsychiatric and metabolic traits.	Sleep traits (multi-trait analysis)	At least 112,586 European ancestry individuals	NA	6p12.1	HCRTR2	rs3122163-?	0.768	4E-10				Affymetrix [up to 73355677] (imputed)	N
1005	chr6	55056367	55056368	rs3122163	27992416	Lane JM	2016-12-19	Nat Genet	Genome-wide association analyses of sleep disturbance traits identify new loci and highlight shared genetics with neuropsychiatric and metabolic traits.	Excessive daytime sleepiness	111,648 European ancestry individuals	NA	6p12.1	HCRTR2	rs3122163-T	0.768	5E-6		0.023	unit decrease	Affymetrix [up to 73355677] (imputed)	N
1005	chr6	55060563	55060564	rs3134693	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	6p12.1		rs3134693-?	NR	3E-14				NR [~ 8900000] (imputed)	N
1005	chr6	55061017	55061018	rs9475195	31164008	Mullins N	2019-06-05	Am J Psychiatry	GWAS of Suicide Attempt in Psychiatric Disorders and Association With Major Depression Polygenic Risk Scores.	Suicide attempts in bipolar disorder or schizophrenia	3,264 European ancestry attempters with bipolar disorder, 5,500 European ancestry nonattempters with bipolar disorder, 1,683 European ancestry attempters with schizophrenia, 2,946 European ancestry nonattempters with schizophrenia	NA	6p12.1	NR	rs9475195-C	0.39	7E-6		1.1235955	[1.08-1.19]	NR [at least 8807005] (imputed)	N
1005	chr6	55133325	55133326	rs2653343	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	6p12.1		rs2653343-?	NR	4E-30				NR [~ 8900000] (imputed)	N
1005	chr6	55133585	55133586	rs2653344	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Daytime nap	386,577 European ancestry individuals	NA	6p12.1	NR	rs2653344-T	0.2127	1E-8		1.074	[1.05-1.1]	Affymetrix, Illumina [10858887] (imputed)	N
1005	chr6	55142336	55142337	rs2653349	33568662	Dashti HS	2021-02-10	Nat Commun	Genetic determinants of daytime napping and effects on cardiometabolic health.	Daytime nap	452,633 European ancestry individuals	541,333 European ancestry individuals	6p12.1	HCRTR2	rs2653349-A		6E-52		0.0161	[0.014-0.018] unit increase	Affymetrix [13304133] (imputed)	N
1005	chr6	55142336	55142337	rs2653349	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	6p12.1		rs2653349-A	0.213	1E-32		0.031	[0.025-0.037] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
1005	chr6	55142336	55142337	rs2653349	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Ease of getting up in the morning	385,949 European ancestry individuals	NA	6p12.1	NR	rs2653349-A	0.213	8E-29		0.0234	[0.019-0.028] unit increase	Affymetrix, Illumina [10862568] (imputed)	N
1005	chr6	55142336	55142337	rs2653349	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	6p12.1	HCRTR2	rs2653349-A	0.2073	3E-48		1.0679		Affymetrix [11880941] (imputed)	N
1005	chr6	55142336	55142337	rs2653349	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	6p12.1	HCRTR2	rs2653349-A	0.2073	3E-48		1.0681199		Affymetrix [11880941] (imputed)	N
1005	chr6	55142336	55142337	rs2653349	26835600	Hu Y	2016-02-02	Nat Commun	GWAS of 89,283 individuals identifies genetic variants associated with self-reporting of being a morning person.	Morning vs. evening chronotype	38,937 European ancestry morning chronotype individuals, 50,346 European ancestry evening chronotype individuals	NA	6p12.1	NR	rs2653349-?	NR	4E-6				Illumina [7427422] (imputed)	N
1005	chr6	55144318	55144318	rs370705844	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	6p12.1	HCRTR2	rs370705844-AAC	0.766336	3E-8		0.013917	[0.009-0.0189] unit increase	NR [16516521] (imputed)	N
1005	chr6	55147508	55147508	rs76899638	27494321	Jones SE	2016-08-05	PLoS Genet	Genome-Wide Association Analyses in 128,266 Individuals Identifies New Morningness and Sleep Duration Loci.	Morning vs. evening chronotype	114,765 British individuals	NA	6p12.1	HCRTR2	rs76899638-A	0.22	2E-7		1.05	[1.03-1.07]	NR [16760980] (imputed)	N
1005	chr6	55147508	55147508	rs76899638	27494321	Jones SE	2016-08-05	PLoS Genet	Genome-Wide Association Analyses in 128,266 Individuals Identifies New Morningness and Sleep Duration Loci.	Chronotype	127,898 British individuals	89,283 individuals	6p12.1	HCRTR2	rs76899638-A	0.22	8E-13		0.026	[0.016-0.036] unit increase	NR [16760980] (imputed)	N
1005	chr6	55148102	55148103	rs9367630	20041166	Fellay J	2009-12-24	PLoS Genet	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	6p12.1	HCRTR2	rs9367630-?	NR	1E-7	(progression)			Illumina [NR]	N
1005	chr6	55151342	55151343	rs7761177	29563502	Fejzo MS	2018-03-21	Nat Commun	Placenta and appetite genes GDF15 and IGFBP7 are associated with hyperemesis gravidarum.	Severity of nausea and vomiting of pregnancy	14,988 European ancestry individuals with no NVP, 14,292 European ancestry individuals with slight NVP, 17,786 European individuals with moderate NVP, 5,445 European ancestry individuals with severe NVP, 1,220 European ancestry individuals with very severe NVP	NA	6p12.1	HCRTR2, GFRAL	rs7761177-C	0.495	6E-9		0.039	[0.026-0.052] unit decrease	Illumina [11956931] (imputed)	N
1006	chr6	55182859	55182860	rs9382484	28604731	Hammerschlag AR	2017-06-12	Nat Genet	Genome-wide association analysis of insomnia complaints identifies risk genes and genetic overlap with psychiatric and metabolic traits.	Ease of getting up in the morning	112,866 European ancestry individuals	NA	6p12.1	NR	rs9382484-G	0.24	1E-8		0.028	[0.019-0.037] unit decrease	Affymetrix [at least 12428592] (imputed)	N
1006	chr6	55189481	55189482	rs10948901	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	6p12.1	NR	rs10948901-?	NR	6E-6		0.240519	[0.14-0.34] unit decrease	Affymetrix [656292] (imputed)	N
1006	chr6	55190290	55190291	rs6924570	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6p12.1	NR	rs6924570-?	NR	6E-9				Affymetrix [~ 8270000] (imputed)	N
1006	chr6	55190290	55190291	rs6924570	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	6p12.1		rs6924570-?	NR	7E-9				NR [~ 8900000] (imputed)	N
1006	chr6	55190479	55190480	rs12110721	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	6p12.1	GFRAL	rs12110721-G	0.825618	2E-23		0.0189364	[0.015-0.023] unit decrease	Affymetrix [12370749]	N
1006	chr6	55196586	55196587	rs12199003	29273807	Turcot V	2017-12-22	Nat Genet	Protein-altering variants associated with body mass index implicate pathways that control energy intake and expenditure in obesity.	Body mass index	up to 449,889 European ancestry individuals, up to 29,398 South Asian ancestry individuals, up to 27,610 African American individuals, up to 8,839 East Asian individuals, up to 10,772 Hispanic ancestry individuals	up to 196,766 European ancestry individuals	6p12.1	GFRAL	rs12199003-T	0.3652	1E-9		0.0111	[0.0076-0.0146] unit increase	Illumina [246328]	N
1006	chr6	55198385	55198386	rs9475248	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip and palate	121 Asian ancestry cases, 159 European ancestry cases, 285 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	6p12.1	NR	rs9475248-?	NR	3E-6		2.23	[2.05-2.43]	Illumina [539000] (imputed)	N
1006	chr6	55205501	55205502	rs7757288	33045005	Vogelezang S	2020-10-12	PLoS Genet	Novel loci for childhood body mass index and shared heritability with adult cardiometabolic traits.	Childhood body mass index	39,620 European ancestry individuals	NA	6p12.1	GFRAL	rs7757288-G	0.39	7E-7		0.04	[0.024-0.056] unit increase	Affymetrix, Illumina [8227808] (imputed)	N
1006	chr6	55217545	55217546	rs9396083	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	6p12.1		rs9396083-A	0.4077	2E-15		0.017	[0.013-0.021] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
1006	chr6	55257797	55257798	rs3846917	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GFRAL	5,364 Icelandic ancestry individuals	NA	6p12.1		rs3846917-T	0.09795	1E-18		0.277166	[0.22-0.34] unit increase	Illumina [7506463] (imputed)	N
1006	chr6	55257934	55257935	rs1032772	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p12.1	GFRAL	rs1032772-C	0.90390625	2E-14	(GFRAL, 6920_1_3)	0.31090838	[0.23-0.39] unit decrease	Illumina [> 1000000] (imputed)	N
1006	chr6	55265020	55265021	rs1502199	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	6p12.1	GFRAL	rs1502199-A	0.25183	2E-26		0.0226177	[0.018-0.027] unit increase	NR [13737936] (imputed)	N
1006	chr6	55265020	55265021	rs1502199	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p12.1		rs1502199-?	NR	2E-14		0.0168571	[0.012-0.022] unit increase	Affymetrix [20259828] (imputed)	N
1006	chr6	55265020	55265021	rs1502199	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	6p12.1	GFRAL	rs1502199-A	0.252244	5E-10		0.0231611	[0.016-0.031] unit increase	NR [17166351] (imputed)	N
1006	chr6	55265020	55265021	rs1502199	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	6p12.1	GFRAL	rs1502199-A	0.252226	1E-8	(women)	0.0291702	[0.019-0.04] unit increase	NR [17166351] (imputed)	N
1006	chr6	55268811	55268812	rs10807491	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p12.1		rs10807491-?	NR	2E-14		0.0168241	[0.012-0.021] unit increase	Affymetrix [20259828] (imputed)	N
1006	chr6	55271943	55271944	rs13203948	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	6p12.1	GFRAL, HMGCLL1	rs13203948-C	0.11019999999999996	8E-16		1.0496484		Affymetrix [11880941] (imputed)	N
1006	chr6	55274926	55274927	rs10948917	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	6p12.1		rs10948917-?	NR	5E-21				NR [~ 8900000] (imputed)	N
1006	chr6	55282855	55282856	rs143297173	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	6p12.1	GFRAL	rs143297173-C	0.0156	3E-10		6.284	NR z score decrease	Illumina [26237160] (imputed)	N
1006	chr6	55282855	55282856	rs143297173	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Blood urea nitrogen levels	139,818 Japanese ancestry individuals	NA	6p12.1	NR	rs143297173-?	NR	2E-12		0.08667	[0.062-0.111] unit increase novel	Illumina [6108953] (imputed)	N
1006	chr6	55307289	55307290	rs12192987	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GFRAL	5,364 Icelandic ancestry individuals	NA	6p12.1		rs12192987-G	0.1657	2E-22		0.241745	[0.19-0.29] unit decrease	Illumina [7506463] (imputed)	N
1007	chr6	55319779	55319780	rs4715551	30942860	Shin J	2019-04-03	J Clin Endocrinol Metab	Novel genetic locus of visceral fat and systemic inflammation.	Visceral fat	1589 French-Canadian ancestry individuals	NA	6p12.1	HMGCLL1	rs4715551-G	NR	9E-6	(adjusted for subcutaneous fat)	0.072	[0.04-0.104] unit decrease	Illumina [8511049] (imputed)	N
1007	chr6	55349135	55349136	rs4334972	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p12.1		rs4334972-?	NR	9E-12		0.0170956	[0.012-0.022] unit decrease	Affymetrix [20259828] (imputed)	N
1007	chr6	55422617	55422618	rs3925003	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	6p12.1	HMGCLL1	rs3925003-T	0.5804	2E-12		0.0018	[0.0012-0.0024] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
1007	chr6	55423716	55423717	rs7755709	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	6p12.1		rs7755709-T	NR	2E-8		0.0115	[0.0076-0.0154] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
1008	chr6	55468835	55468836	rs76768932	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p12.1		rs76768932-?	NR	3E-15		0.0470433	[0.036-0.058] unit decrease	Affymetrix [20259828] (imputed)	N
1008	chr6	55468835	55468836	rs76768932	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	6p12.1	HMGCLL1	rs76768932-G	0.966395	3E-7		0.0495791	[0.031-0.068] unit decrease	NR [17166351] (imputed)	N
1008	chr6	55472627	55472628	rs77606322	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	6p12.1	HMGCLL1	rs77606322-T	0.96805	1E-19		0.0468776	[0.037-0.057] unit decrease	NR [13737936] (imputed)	N
1008	chr6	55472627	55472628	rs77606322	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	6p12.1		rs77606322-?	NR	3E-17				NR [~ 8900000] (imputed)	N
1008	chr6	55472627	55472628	rs77606322	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p12.1		rs77606322-?	NR	9E-16		0.0481123	[0.037-0.059] unit decrease	Affymetrix [20259828] (imputed)	N
1008	chr6	55473293	55473294	rs11754509	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6p12.1	HMGCLL1	rs11754509-G	0.013	3E-7	(Urinary free dopamine: creatinine)	0.03	[NR] unit increase	Illumina [899892]	N
1008	chr6	55521628	55521629	rs116697020	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p12.1		rs116697020-?	NR	7E-11		0.043537	[0.03-0.057] unit increase	Affymetrix [20259828] (imputed)	N
1008	chr6	55535374	55535375	rs72975088	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GFRAL	5,364 Icelandic ancestry individuals	NA	6p12.1		rs72975088-T	0.1903	5E-23		0.23674	[0.19-0.28] unit increase	Illumina [7506463] (imputed)	N
1008	chr6	55535374	55535375	rs72975088	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p12.1	GFRAL	rs72975088-T	0.149	1E-12	(GDNF family receptor alpha-like, GFRAL.6920.1.3)	0.25	[0.19-0.31] unit increase	Affymetrix [10572788] (imputed)	N
1008	chr6	55566107	55566108	rs13204733	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	6p12.1	BMP5	rs13204733-G	0.141	2E-7	(conditioned on lead SNPs in LD)	1.07	[1.04-1.10]	Affymetrix, Illumina [16900397] (imputed)	N
1008	chr6	55567752	55567753	rs2498527	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6p12.1		rs2498527-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1008	chr6	55572186	55572187	rs2208605	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	6p12.1	intergenic	rs2208605-T	0.2078	4E-10		0.0146	[0.01-0.019] unit increase	Affymetrix [18391927] (imputed)	N
1009	chr6	55585150	55585151	rs191147097	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p12.1		rs191147097-?	NR	1E-14		0.195215	[0.14-0.25] unit decrease	Affymetrix [20259828] (imputed)	N
1009	chr6	55585150	55585151	rs191147097	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	6p12.1	BMP5	rs191147097-A	0.995358	3E-7	(women)	0.250497	[0.15-0.35] unit decrease	NR [17166351] (imputed)	N
1009	chr6	55585150	55585151	rs191147097	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	6p12.1	BMP5	rs191147097-A	0.995258	4E-11		0.237358	[0.17-0.31] unit decrease	NR [17166351] (imputed)	N
1009	chr6	55593249	55593250	rs9475390	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	6p12.1	NR	rs9475390-T	0.07	3E-9		0.0215	[0.014-0.029] unit increase	NR [NR]	N
1009	chr6	55604266	55604267	rs541928175	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p12.1		rs541928175-?	NR	2E-42		0.0573308	[0.049-0.066] unit decrease	Affymetrix [20259828] (imputed)	N
1009	chr6	55612106	55612107	rs1154855	33597122	Verbitsky M	2021-02-17	J Am Soc Nephrol	Copy Number Variant Analysis and Genome-wide Association Study Identify Loci with Large Effect for Vesicoureteral Reflux.	Vesicoureteral reflux	1,395 European ancestry cases, 5,366 European ancestry controls	NA	6p12.1	NR	rs1154855-T	0.5219	4E-9	(additive, female)	0.7075125	[0.630372729762264-0.794091964607055]	Affymetrix, Illumina [6131010] (imputed)	N
1009	chr6	55624016	55624017	rs72868839	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	6p12.1	BMP5	rs72868839-A	0.930425	6E-48		0.0524247	[0.045-0.059] unit decrease	NR [13737936] (imputed)	N
1009	chr6	55624016	55624017	rs72868839	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p12.1		rs72868839-?	NR	5E-41		0.0539064	[0.046-0.062] unit decrease	Affymetrix [20259828] (imputed)	N
1009	chr6	55624016	55624017	rs72868839	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	6p12.1	BMP5	rs72868839-A	0.930643	1E-14	(women)	0.0701918	[0.052-0.088] unit decrease	NR [17166351] (imputed)	N
1009	chr6	55624016	55624017	rs72868839	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	6p12.1	BMP5	rs72868839-A	0.930371	9E-15		0.0499724	[0.037-0.063] unit decrease	NR [17166351] (imputed)	N
1009	chr6	55636939	55636940	rs80287694	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Osteoarthritis (hip)	15,704 European ancestry cases, 378,169 European ancestry controls	NA	6p12.1	NR	rs80287694-G	0.11	3E-9		1.12	[1.08-1.16]	Affymetrix, Illumina [up to 17000000] (imputed)	N
1009	chr6	55638257	55638258	rs9475400	34450027	Boer CG	2021-08-24	Cell	Deciphering osteoarthritis genetics across 826,690 individuals from 9 populations.	Osteoarthritis (with total hip replacement)	23,021 European ancestry cases, 296,016 European ancestry controls	NA	6p12.1		rs9475400-T	0.0979	2E-13		1.1453383	[1.104769441-1.187396788]	Affymetrix, Illumina [NR] (imputed)	N
1009	chr6	55644600	55644601	rs72868882	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Lean body mass	3,399 whole genome sequenced individuals, 11,801 European ancestry individuals	10,676 European ancestry individuals	6p12.1	BMP5	rs72868882-T	0.0642	8E-6		0.1074	[0.06-0.154] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1009	chr6	55676620	55676621	rs150445982	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	6p12.1	BMP5	rs150445982-C	0.980367	1E-37		0.0867821	[0.074-0.1] unit decrease	NR [13737936] (imputed)	N
1009	chr6	55676620	55676621	rs150445982	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	6p12.1		rs150445982-?	NR	2E-46				NR [~ 8900000] (imputed)	N
1009	chr6	55676620	55676621	rs150445982	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p12.1		rs150445982-?	NR	6E-49		0.103724	[0.09-0.118] unit decrease	Affymetrix [20259828] (imputed)	N
1010	chr6	55712123	55712124	rs62404966	31089142	Law PJ	2019-05-14	Nat Commun	Association analyses identify 31 new risk loci for colorectal cancer susceptibility.	Colorectal cancer	31,197 European ancestry cases, 61,770 European ancestry controls	NA	6p12.1	NR	rs62404966-C	NR	3E-9		1.08	[1.05-1.10]	Affymetrix, Illumina [> 10000000] (imputed)	N
1010	chr6	55712123	55712124	rs62404966	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	6p12.1	BMP5	rs62404966-C	0.7623	3E-9		1.06	[1.04-1.09]	Affymetrix, Illumina [16900397] (imputed)	N
1010	chr6	55715101	55715102	rs9475429	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Colon polyp	22,049 European ancestry cases, 332,368 European ancestry controls, 4,768 East Asian ancestry cases, 166,052 East Asian ancestry controls	NA	6p12.1		rs9475429-A	NR	6E-11		0.0652	[0.046-0.085] unit decrease	Affymetrix, Illumina [20457468] (imputed)	N
1010	chr6	55715714	55715715	rs12215796	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	6p12.1	NR	rs12215796-?	NR	3E-11	(Brain stem)			NR [9227495] (imputed)	N
1010	chr6	55717727	55717728	rs9296804	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	6p12.1	NR	rs9296804-?	NR	1E-8	(right cerebellum white matter)			NR [9227495] (imputed)	N
1010	chr6	55717727	55717728	rs9296804	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	6p12.1	NR	rs9296804-?	NR	1E-10	(left cerebellum white matter)			NR [9227495] (imputed)	N
1010	chr6	55719866	55719867	rs4715567	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 1)	4,680 European ancestry individuals	3,566 European ancestry individuals	6p12.1		rs4715567-A	0.430160985	2E-8				Illumina [7417619] (imputed)	N
1010	chr6	55781225	55781226	rs62404993	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	6p12.1	BMP5	rs62404993-T	0.962023	2E-12		0.0341298	[0.025-0.044] unit increase	NR [13737936] (imputed)	N
1010	chr6	55785025	55785026	rs62404994	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	6p12.1		rs62404994-?	NR	7E-16				NR [~ 8900000] (imputed)	N
1010	chr6	55785241	55785242	rs9475474	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p12.1		rs9475474-?	NR	1E-16		0.0444693	[0.034-0.055] unit increase	Affymetrix [20259828] (imputed)	N
1010	chr6	55796852	55796853	rs150694678	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	6p12.1	BMP5	rs150694678-AT	0.982434	9E-16	(women)	0.165128	[0.12-0.21] unit decrease	NR [17166351] (imputed)	N
1010	chr6	55796852	55796853	rs150694678	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	6p12.1	BMP5	rs150694678-AT	0.982283	6E-23		0.145913	[0.12-0.18] unit decrease	NR [17166351] (imputed)	N
1010	chr6	55796852	55796853	rs150694678	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	6p12.1	BMP5	rs150694678-AT	0.982109	3E-7	(men)	0.110779	[0.066-0.156] unit decrease	NR [17166351] (imputed)	N
1011	chr6	55878914	55878914	rs550300074	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p12.1		rs550300074-?	NR	3E-52		0.155532	[0.13-0.18] unit decrease	Affymetrix [20259828] (imputed)	N
1011	chr6	55887239	55887240	rs9475512	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	6p12.1		rs9475512-?	NR	2E-12				NR [~ 8900000] (imputed)	N
1011	chr6	55925193	55925194	rs72874231	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	6p12.1	COL21A1	rs72874231-G	0.949355	2E-17		0.0362672	[0.028-0.045] unit decrease	NR [13737936] (imputed)	N
1011	chr6	55925193	55925194	rs72874231	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p12.1		rs72874231-?	NR	9E-33		0.0531478	[0.044-0.062] unit decrease	Affymetrix [20259828] (imputed)	N
1011	chr6	55935567	55935568	rs200999181	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	6p12.1		rs200999181-A	NR	5E-10		0.2062	[0.14-0.27] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1011	chr6	55935567	55935568	rs200999181	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	225,112 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	445,360 individuals	6p12.1	COL21A1	rs200999181-A	0.0011	8E-11		2.566	[1.79-3.34] mmHg increase	Affymetrix [NR] (imputed)	N
1011	chr6	55935567	55935568	rs200999181	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	225,112 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	445,360 individuals	6p12.1	COL21A1	rs200999181-A	0.0011	6E-36		3.6343	[3.07-4.2] mmHg increase	Affymetrix [NR] (imputed)	N
1011	chr6	55935567	55935568	rs200999181	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Pulse pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	6p12.1	COL21A1	rs200999181-A	0.0013	1E-9		3.1492	[2.13-4.16] mmHg increase	Illumina [242296]	N
1011	chr6	55947456	55947456	rs138466411	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	6p12.1		rs138466411-AT	NR	5E-27		0.0335	[0.027-0.04] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
1011	chr6	55950373	55950374	rs12196860	24132900	Kanazawa T	2013-10-01	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of atypical psychosis.	Psychosis (atypical)	47 Japanese ancestry cases, 882 Japanese ancestry controls	NA	6p12.1	COL21A1	rs12196860-?		2E-7				Affymetrix [545513]	N
1012	chr6	55994236	55994237	rs12203179	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	6p12.1	COL21A1	rs12203179-G	0.8396	4E-26		0.3528	[0.29-0.42] mmHg decrease	Affymetrix [NR] (imputed)	N
1012	chr6	55994236	55994237	rs12203179	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Diastolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	6p12.1	COL21A1	rs12203179-G	0.6788	2E-11		0.219	[0.16-0.28] mmHg increase	Affymetrix [NR] (imputed)	N
1012	chr6	55999536	55999537	rs62413470	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Joint mobility (Beighton score)	64,143 European ancestry individuals	NA	6p12.1	COL21A1	rs62413470-?	NR	9E-7		0.074	[0.045-0.104] unit increase	Illumina [12039492] (imputed)	N
1012	chr6	56035642	56035643	rs2764043	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	225,112 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	445,360 individuals	6p12.1	COL21A1	rs2764043-G	0.0016	2E-14		1.8877	[1.4-2.37] mmHg increase	Affymetrix [NR] (imputed)	N
1012	chr6	56064196	56064197	rs1474698	26390057	Kato N	2015-09-21	Nat Genet	Trans-ancestry genome-wide association study identifies 12 genetic loci influencing blood pressure and implicates a role for DNA methylation.	Pulse pressure	31,516 East Asian ancestry individuals,  35,352 European ancestry individuals, 33,126 South Asian ancestry individuals	87,205 individuals, 48,268 East Asian ancestry individuals, 68,456 European ancestry individuals and 16,328 South Asian ancestry individuals	6p12.1	NR	rs1474698-T	0.617473324283451	5E-9		0.2040225	[0.14-0.27] mmHg decrease	Affymetrix, Illumina, Perlegen [~ 2100000] (imputed)	N
1012	chr6	56092915	56092916	rs4712120	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	6p12.1	COL21A1	rs4712120-G	0.576	3E-9		0.1971	[0.13-0.26] mmHg decrease	Affymetrix [NR] (imputed)	N
1012	chr6	56095671	56095672	rs1925148	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	6p12.1		rs1925148-?	NR	5E-13				NR [~ 8900000] (imputed)	N
1013	chr6	56099423	56099424	rs4140574	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	6p12.1	COL21A1	rs4140574-T		4E-19		0.231	unit increase	Affymetrix [at least 2696785] (imputed)	N
1013	chr6	56102779	56102780	rs1925153	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Pulse pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	154,543 European ancestry individuals, 26,183 South Asian ancestry individuals	6p12.1	COL21A1	rs1925153-T	0.445	5E-8	(EA)	0.19	[0.11-0.27] unit decrease	Illumina [247039]	N
1013	chr6	56105972	56105973	rs12205794	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	6p12.1	NR	rs12205794-?	NR	2E-9	(CSF)			NR [9227495] (imputed)	N
1013	chr6	56111969	56111970	rs3857615	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	6p12.1		rs3857615-C	0.4	3E-9		5.92	z score increase	Affymetrix [9061022] (imputed)	N
1013	chr6	56112342	56112343	rs2745367	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 117)	19,670 European ancestry individuals	NA	6p12.1		rs2745367-?	NR	5E-11				NR [9705931] (imputed)	N
1013	chr6	56203673	56203674	rs9464379	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Small cell lung carcinoma	2,664 European ancestry cases,  21,444 European ancestry controls	NA	6p12.1	COL21A1, DST	rs9464379-G	0.5832657130000001	8E-6		1.1592995	[1.09-1.24]	Illumina [10439017] (imputed)	N
1013	chr6	56203903	56203904	rs6935231	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	1,940 Japanese ancestry cases, 7,408 Japanese ancestry controls	4,071 Japanese ancestry cases, 54,470 Japanese ancestry controls	6p12.1	COL21A1	rs6935231-A	NR	5E-6		1.1560693	[1.08-1.25]	Illumina [6627481] (imputed)	N
1013	chr6	56206052	56206053	rs144664021	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,963 Sub-Saharan African ancestry females	NA	6p12.1		rs144664021-C	0.963941	1E-6		0.034571	[0.021-0.048] unit decrease	Illumina [13900000] (imputed)	N
1013	chr6	56208750	56208751	rs9475676	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	6p12.1		rs9475676-?	NR	6E-10				NR [~ 8900000] (imputed)	N
1013	chr6	56209250	56209251	rs9475677	27694959	Bonder MJ	2016-10-03	Nat Genet	The effect of host genetics on the gut microbiome.	Gut microbiota (functional units)	984 European ancestry individuals	530 European ancestry individuals	6p12.1	COL21A1	rs9475677-A	NR	2E-8	(PWY-6728_methylaspartate_cycle)	5.6379704	NR Z-score increase	Illumina [8100000] (imputed)	N
1013	chr6	56210763	56210764	rs16887812	23817571	Bonnelykke K	2013-06-30	Nat Genet	Meta-analysis of genome-wide association studies identifies ten loci influencing allergic sensitization.	Allergic sensitization	5,789 European ancestry cases, 10,056 European ancestry controls	6,114 European ancestry cases, 9,920 European ancestry controls	6p12.1	COL21A1	rs16887812-T	0.35	7E-6		1.1	[1.05-1.14]	Affymetrix, Illumina [~ 2500000] (imputed)	N
1013	chr6	56219752	56219753	rs9370524	27802415	Salvi E	2016-10-31	Hypertension	Genome-Wide and Gene-Based Meta-Analyses Identify Novel Loci Influencing Blood Pressure Response to Hydrochlorothiazide.	Diastolic blood pressure response to hydrochlorothiazide in hypertension	1,739 European ancestry individuals	430 African American individuals	6p12.1	COL21A1	rs9370524-A	0.36	9E-6	(EA)	0.58	[NR] mmHg increase	Affymetrix, Illumina [up to 2500000] (imputed)	N
1014	chr6	56235825	56235826	rs6899968	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	6p12.1	NR	rs6899968-?	NR	2E-9				Illumina [at least 7383741] (imputed)	N
1014	chr6	56239954	56239955	rs115830429	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	6p12.1		rs115830429-?	NR	3E-20				NR [~ 8900000] (imputed)	N
1014	chr6	56245811	56245812	rs9370527	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	6p12.1	COL21A1	rs9370527-G	0.759058	6E-9		0.00949473	[0.0063-0.0127] unit decrease	Affymetrix [12370749]	N
1014	chr6	56270405	56270405	rs781665199	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glutamine levels	114,751 European ancestry individuals	NA	6p12.1		rs781665199-TGTGA	0.619465	3E-8		0.0237306	[0.015-0.032] unit increase	NR [11722792] (imputed)	N
1014	chr6	56290410	56290411	rs607934	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Daytime sleep phenotypes	874 European ancestry individuals	NA	6p12.1	RCC2P7, COL21A1, DST	rs607934-T	NR	5E-6	(daytime resting duration)	0.1249	[0.071-0.178] unit decrease	Affymetrix [7141204] (imputed)	N
1014	chr6	56298721	56298722	rs12195424	26545630	Deming Y	2015-09-25	Neurobiol Aging	A potential endophenotype for Alzheimer's disease: cerebrospinal fluid clusterin.	Cerebrospinal fluid clusterin levels	300 Alzheimer's disease cases, 373 controls	NA	6p12.1	DST	rs12195424-?		3E-6		0.35	[NR] unit decrease	Illumina [5970354] (imputed)	N
1014	chr6	56302053	56302054	rs9475699	30317457	Bonnemaijer PWM	2018-10-13	Hum Genet	Genome-wide association study of primary open-angle glaucoma in continental and admixed African populations.	Glaucoma (primary open-angle)	484 Sub-Saharan African ancestry cases, 179 South African Coloured ancestry cases, 450 African American cases, 380 Sub-Saharan African ancestry controls, 96 South African Coloured ancestry controls, 1350 African American controls	1,993 Sub-Saharan African ancestry cases, 2,595 African American cases, 1,730 Sub-Saharan African ancestry controls, 2,813 African American controls	6p12.1	COL21A1-DST	rs9475699-A	0.21	3E-6		1.04	[0.82-1.31]	Illumina [~ 13800000] (imputed)	N
1014	chr6	56323549	56323550	rs79455288	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p12.1		rs79455288-?	NR	1E-15		0.0370735	[0.028-0.046] unit increase	Affymetrix [20259828] (imputed)	N
1014	chr6	56336405	56336406	rs2894837	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	6p12.1	RNU6-71P	rs2894837-A	0.6398	2E-13		0.0192	[0.014-0.024] unit increase	Affymetrix [19819130] (imputed)	N
1014	chr6	56336405	56336406	rs2894837	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	6p12.1	RNU6-71P	rs2894837-A	0.6398	6E-6		0.0112	[0.0063-0.0161] unit increase	Affymetrix [19819130] (imputed)	N
1014	chr6	56336405	56336406	rs2894837	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	6p12.1	RNU6-71P	rs2894837-A	0.6398	4E-9		0.0147	[0.0098-0.0196] unit increase	Affymetrix [19819130] (imputed)	N
1014	chr6	56336405	56336406	rs2894837	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	6p12.1	RNU6-71P	rs2894837-A	0.6398	9E-13		0.0175	[0.013-0.022] unit increase	Affymetrix [19819130] (imputed)	N
1014	chr6	56342135	56342136	rs34892827	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Alcohol consumption x experiences in childhood (felt loved by family member) interaction	41,648 European ancestry individuals	NA	6p12.1		rs34892827-?	NR	5E-10		1.63	[1.12-2.14] unit decrease	Affymetrix [NR] (imputed)	N
1014	chr6	56342135	56342136	rs34892827	26174813	Alemany S	2015-07-14	Am J Med Genet B Neuropsychiatr Genet	New suggestive genetic loci and biological pathways for attention function in adult attention-deficit/hyperactivity disorder.	Attention function in attention deficit hyperactive disorder	479 European ancestry adult cases	NA	6p12.1	DST	rs34892827-T	0.015	2E-6	(HRTSE)	3.45	[2.04-4.86] unit increase	Illumina [799713]	N
1015	chr6	56398018	56398019	rs4288197	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	6p12.1	DST	rs4288197-T	0.949891	8E-14		0.0311196	[0.023-0.039] unit increase	NR [13737936] (imputed)	N
1015	chr6	56398018	56398019	rs4288197	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	6p12.1		rs4288197-?	NR	5E-17				NR [~ 8900000] (imputed)	N
1015	chr6	56407805	56407806	rs112462597	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p12.1		rs112462597-?	NR	6E-16		0.0372222	[0.028-0.046] unit increase	Affymetrix [20259828] (imputed)	N
1015	chr6	56472365	56472366	rs75788255	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Pancreatic cancer	768 White British ancestry cases, 264,559 White British ancestry controls	NA	6p12.1		rs75788255-?	NR	7E-6		33.2127	[31.68-34.74]	NR [663102]	N
1016	chr6	56531643	56531644	rs72881017	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6p12.1		rs72881017-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1016	chr6	56575670	56575671	rs17684571	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	6p12.1	NR	rs17684571-C	NR	4E-6		1.0638298	[NR]	Illumina [7158791] (imputed)	N
1016	chr6	56581699	56581700	rs150881933	32238385	Nakayama A	2020-04-01	Ann Rheum Dis	Subtype-specific gout susceptibility loci and enrichment of selection pressure on ABCG2 and ALDH2 identified by subtype genome-wide meta-analyses of clinically defined gout patients.	Gout (normal type)	92 Japanese ancestry male cases, 4,554 Japanese ancestry male controls	NA	6p12.1	DST	rs150881933-T	0.019	4E-7		7.07	[3.33-15.04]	Illumina [7206774] (imputed)	N
1016	chr6	56600120	56600121	rs41267675	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	6p12.1		rs41267675-?	NR	3E-13				NR [~ 8900000] (imputed)	N
1016	chr6	56606277	56606278	rs13219546	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p12.1	NR	rs13219546-T	0.149113	2E-12				Affymetrix, Illumina [24332387] (imputed)	N
1016	chr6	56616256	56616256	rs139880002	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	6p12.1	NR	rs139880002-I	0.177648	2E-13		0.019332	[0.014-0.024] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
1017	chr6	56646496	56646497	rs539280149	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	6p12.1	DST	rs539280149-T	0.9988	6E-11		0.1898	[0.13-0.25] unit decrease	Affymetrix [18391927] (imputed)	N
1017	chr6	56697414	56697415	rs34510405	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6p12.1	DST	rs34510405-C	0.179264	2E-14		0.021897268	[0.016-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1017	chr6	56708509	56708510	rs185968827	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	6p12.1	DST	rs185968827-A	NR	2E-7	(between families)	5.158	unit increase	Affymetrix [up to 15107142] (imputed)	N
1017	chr6	56723724	56723725	rs13215883	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	6p12.1		rs13215883-G	NR	3E-8		0.0147	[0.0096-0.0198] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
1017	chr6	56726144	56726145	rs16888184	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	6p12.1	DST, RP11-472M19.2	rs16888184-G	0.183099	3E-11		0.018757895	[0.013-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1018	chr6	56769979	56769980	rs9296855	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA			rs9296855-?	NR	7E-8				NR [~ 8900000] (imputed)	N
1018	chr6	56780740	56780741	rs9475752	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	6p12.1	DST, BEND6	rs9475752-C	0.81	8E-12		0.04	[0.028-0.052] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
1018	chr6	56809321	56809322	rs2613119	34130359	Curtis SW	2021-06-15	Genet Epidemiol	FAT4 identified as a potential modifier of orofacial cleft laterality.	Right unilateral cleft lip	43 Asian ancestry cases, 40 European ancestry cases, 47 Hispanic cases, 1,626 controls	NA	6p12.1	NR	rs2613119-?		7E-6		2.44	[1.65-3.60]	Illumina [539473] (imputed)	N
1018	chr6	56830894	56830895	rs71564871	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	6p12.1		rs71564871-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1018	chr6	56848841	56848842	rs34399458	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	6p12.1		rs34399458-?	NR	1E-18				NR [~ 8900000] (imputed)	N
1018	chr6	56880458	56880459	rs2013674	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6p12.1		rs2013674-?	NR	7E-13				NR [~ 8900000] (imputed)	N
1019	chr6	56891978	56891979	rs1044670	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	6p12.1		rs1044670-A	NR	3E-8		0.0124	[0.0081-0.0167] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1020	chr6	57105601	57105602	rs223288	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Stable angina pectoris	17,894 European ancestry cases, 325,132 European ancestry controls, 18,833 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	6p11.2		rs223288-C	NR	4E-9		0.1129	[0.075-0.151] unit decrease	Affymetrix, Illumina [20456336] (imputed)	N
1020	chr6	57106711	57106712	rs223290	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	6p11.2	intergenic	rs223290-T	0.08	1E-11		0.089	[0.064-0.114] unit increase	Affymetrix [7947838] (imputed)	N
1020	chr6	57113815	57113816	rs430918	30104761	Zhou W	2018-08-13	Nat Genet	Efficiently controlling for case-control imbalance and sample relatedness in large-scale genetic association studies.	Coronary artery disease	31,355 European ancestry cases, 377,103 European ancestry controls	NA	6p11.2	RAB23, LOC100506188	rs430918-T	0.066	5E-8				Affymetrix [28000000] (imputed)	N
1020	chr6	57138772	57138773	rs148372137	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 14, intercanthal width)	2,187 European ancestry individuals	NA	6p11.2	NR	rs148372137-T	0.01307	4E-6		0.6142	[0.35-0.87] unit decrease	Illumina [10677593] (imputed)	N
1020	chr6	57145561	57145562	rs11752218	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	6p11.2	LOC100506188, PRIM2	rs11752218-?	NR	2E-17		0.0870826	[0.067-0.107] unit increase	Illumina [4804024] (imputed)	N
1021	chr6	57148170	57148171	rs71566846	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	6p11.2	intergenic	rs71566846-T	0.0662	3E-13		0.0829	[0.061-0.105] unit increase	Affymetrix [at least 7947838] (imputed)	N
1021	chr6	57148970	57148971	rs1330633	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	6p11.2	PRIM2	rs1330633-G	0.065918	7E-8		1.08	[1.05-1.12]	NR [8126035] (imputed)	N
1021	chr6	57160571	57160572	rs9367716	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	6p11.2	intergenic	rs9367716-T	0.3172	1E-9		0.0375	[0.026-0.049] unit decrease	NR [8041861] (imputed)	N
1021	chr6	57177665	57177666	rs12664535	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	6p11.2	RAB23, PRIM2	rs12664535-?	NR	6E-7		1.09	[1.05-1.13]	Illumina [at least 5000000] (imputed)	N
1021	chr6	57236976	57236977	rs3800007	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental extreme longevity (95 years and older)	1,339 middle-aged British cases, 40,934 middle-aged British controls	NA	6p11.2	NR	rs3800007-?	NR	4E-6		0.01239	[0.0071-0.0177] unit decrease	Affymetrix [9658292] (imputed)	N
1022	chr6	57353169	57353170	rs12660153	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Sunburns	approximately 344,000 European ancestry individuals	NA	6q11.1		rs12660153-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1022	chr6	57359148	57359149	rs9476035	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	6q11.1		rs9476035-?	NR	8E-8				NR [~ 8900000] (imputed)	N
1022	chr6	57401057	57401058	rs9476082	24823311	Guan W	2014-05-13	Circ Cardiovasc Genet	Genome-wide association study of plasma N6 polyunsaturated fatty acids within the cohorts for heart and aging research in genomic epidemiology consortium.	Plasma omega-6 polyunsaturated fatty acid levels (dihomo-gamma-linolenic acid)	8,631 European ancestry individuals	NA	6q11.1	PRIM2	rs9476082-A	0.167	4E-6		0.09	[NR] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1023	chr6	57452207	57452208	rs9382808	30898391	Lawrenson K	2019-03-19	Gynecol Oncol	Genome-wide association studies identify susceptibility loci for epithelial ovarian cancer in east Asian women.	Epithelial ovarian cancer	3,238 East Asian ancestry cases, 4,083 East Asian ancestry controls	NA	6q11.1		rs9382808-?	NR	2E-6	(clearcell)	1.82		Illumina [11595112] (imputed)	N
1024	chr6	57626101	57626102	rs9382872	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	6q11.1		rs9382872-A	NR	6E-10		0.0124	[0.0085-0.0163] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
1025	chr6	57698806	57698806	rs113493369	33568662	Dashti HS	2021-02-10	Nat Commun	Genetic determinants of daytime napping and effects on cardiometabolic health.	Daytime nap	452,633 European ancestry individuals	541,333 European ancestry individuals	6q11.1	PRIM2	rs113493369-C		8E-13		0.0061	[0.0043-0.0079] unit increase	Affymetrix [13304133] (imputed)	N
1025	chr6	57749348	57749349	rs9476307	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	6q11.1		rs9476307-?	NR	3E-10				NR [~ 8900000] (imputed)	N
1025	chr6	57755144	57755145	rs28478118	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	6q11.1		rs28478118-G	NR	3E-8		0.0114	[0.0075-0.0153] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1025	chr6	57767575	57767576	rs9476310	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	417,580 European ancestry individuals	NA	6q11.1		rs9476310-C	0.488637	4E-9		0.012	[0.0081-0.0159] unit decrease	NR [7250403] (imputed)	N
1025	chr6	57767575	57767576	rs9476310	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	6q11.1	PRIM2, GUSBP4	rs9476310-T	0.5104	8E-13		1.0266489		Affymetrix [11880941] (imputed)	N
1026	chr6	57856967	57856968	rs114917513	31504550	Bradfield JP	2019-07-05	Hum Mol Genet	A Trans-ancestral Meta-Analysis of Genome-Wide Association Studies Reveals Loci Associated with Childhood Obesity.	Childhood obesity	8,613 European ancestry cases, 3,213 African American cases, 69 Moroccan ancestry cases, 986 Hispanic/Latino cases, 124 East Asian ancestry cases, 12,696 European ancestry controls, 1,392 African American controls, 64 Moroccan ancestry controls, 993 Hispanic/Latino controls, 454 East Asian ancestry controls	NA	6q11.1	NR	rs114917513-T	NR	1E-6	(African)	1.5204	[0.91-2.13] unit decrease	Affymetrix, Illumina [up to 15123508] (imputed)	N
1027	chr6	58056480	58056481	rs6926037	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	6q11.1	intergenic	rs6926037-T	0.0183062865721565	8E-6	(G_Alloprevotella_RNT)	1.08793	[0.61-1.57] unit decrease	Illumina [7711310] (imputed)	N
1028	chr6	58146053	58146054	rs4598117	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	6p11.2	NR	rs4598117-?	NR	9E-6				Affymetrix [NR]	N
1029	chr6	58308954	58308955	rs9500256	20208534	Rothenberg ME	2010-03-07	Nat Genet	Common variants at 5q22 associate with pediatric eosinophilic esophagitis.	Eosinophilic esophagitis (pediatric)	181 European ancestry cases, 1,974 European ancestry controls	170 European ancestry cases, 1,130 European ancestry controls	6p11.2	NR	rs9500256-?	0.58	5E-6		2.04	[1.52-2.70]	Illumina [~ 550000]	N
1030	chr6	58359250	58359251	rs1981309	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter alcoholic beverage consumption	336,448 European ancestry individuals	39,924 European ancestry individuals	6p11.2	GUSBP4-LINC00680	rs1981309-G	0.2521	5E-6		0.0053	[0.0029-0.0077] unit increase	Affymetrix [~ 7740000] (imputed)	N
1030	chr6	58368571	58368572	rs1970606	31250797	Brick LA	2019-05-01	J Stud Alcohol Drugs	Characterization of DSM-IV Opioid Dependence Among Individuals of European Ancestry.	Opioid dependence	2,120 European ancestry cases, 1,944 European ancestry controls	NA	6p11.2	LOC101927293	rs1970606-G	NR	8E-9		0.06	[0.04-0.08] unit increase	Illumina [6200495] (imputed)	N
1030	chr6	58370924	58370925	rs1557219	31250797	Brick LA	2019-05-01	J Stud Alcohol Drugs	Characterization of DSM-IV Opioid Dependence Among Individuals of European Ancestry.	Opioid dependence	2,120 European ancestry cases, 1,944 European ancestry controls	NA	6p11.2	LOC101927293	rs1557219-C	NR	9E-9		0.06	[0.04-0.08] unit increase	Illumina [6200495] (imputed)	N
1030	chr6	58371947	58371948	rs1936246	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6p11.2		rs1936246-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1030	chr6	58371947	58371948	rs1936246	25778476	Jun G	2015-03-17	Mol Psychiatry	A novel Alzheimer disease locus located near the gene encoding tau protein.	Alzheimer's disease (APOE e4 interaction)	10,352 APOE e4+ cases, 9,207 APOE e4+ controls, 7,184 APOE e4- cases, 26,968 APOE e4- controls	1,250 APOE e4+ European ancestry cases, 536 APOE e4+ European ancestry controls, 718 APOE e4- European ancestry cases, 1,699 APOE e4- European ancestry controls	6p11.2	GAPDHP15, RBBP4P4	rs1936246-T	0.43	2E-13		1.04	[1.03-1.05]	NR [NR]	N
1030	chr6	58396218	58396219	rs62464139	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	6p11.2	RP11-278J20.2	rs62464139-A	0.240173	5E-9		0.015231848	[0.01-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1030	chr6	58427809	58427810	rs181979634	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	6p11.2	intergenic	rs181979634-G	0.0152855384696902	8E-6	(G_Alloprevotella_RNT)	1.1106	[0.62-1.6] unit decrease	Illumina [7711310] (imputed)	N
1030	chr6	58428820	58428821	rs1224712	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	6p11.2	NR	rs1224712-G	0.600988	3E-12		0.013522	[0.0097-0.0173] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1031	chr6	58539798	58539799	rs57869623	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	6p11.2	NR	rs57869623-A	0.217891	7E-13		0.017388	[0.013-0.022] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
1033	chr6	58731117	58731118	rs62411494	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	6p11.2		rs62411494-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1033	chr6	58757731	58757732	rs112464710	32439431	Simard M	2020-05-19	J Allergy Clin Immunol	Polygenic risk score for atopic dermatitis in the Canadian population.	Atopic dermatitis (moderate to severe)	222 South East Asian ancestry, East Asian ancestry, South Asian ancestry, African American or Afro-Caribbean, European ancestry, Greater Middle Eastern (Middle Eastern, North African or Persian) cases, 2,466 Greater Middle Eastern (Middle Eastern, North African or Persian), Hispanic or Latin American, NR moderate to severe atopic dermatitis cases, 2,466 South East Asian ancestry, East Asian ancestry, South Asian ancestry, African American or Afro-Caribbean, European ancestry, Greater Middle Eastern (Middle Eastern, North African or Persian) cases, 2,466 Greater Middle Eastern (Middle Eastern, North African or Persian), Hispanic or Latin American, NR controls without moderate to severe atopic dermatitis	NA	6p11.2		rs112464710-G	NR	6E-6	(additive)	1.035	[0.587-1.484] unit increase	Illumina [5894709] (imputed)	N
1033	chr6	58764530	58764531	rs4513829	24159190	Seppala I	2013-10-24	Eur Heart J	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Symmetrical dimethylarginine levels	5110 European ancestry individuals	NA	6p11.2	NR	rs4513829-G	0.104	6E-6		0.179	[0.1-0.26] unit decrease	Affymetrix, Illumina [10085758] (imputed)	N
1033	chr6	58774693	58774694	rs6914243	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p11.2	NR	rs6914243-A	0.191352	2E-13				Affymetrix, Illumina [20825802] (imputed)	N
1033	chr6	58775472	58775473	rs6903638	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p11.2	NR	rs6903638-A	0.195495	3E-12				Affymetrix, Illumina [24246363] (imputed)	N
1057	chr6	61914686	61914687	rs7759619	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q11.1	NR	rs7759619-T	0.184469	7E-11				Affymetrix, Illumina [20825802] (imputed)	N
1057	chr6	61951859	61951860	rs2342002	24121790	Levine DM	2013-10-13	Nat Genet	A genome-wide association study identifies new susceptibility loci for esophageal adenocarcinoma and Barrett's esophagus.	Esophageal adenocarcinoma	1,516 European ancestry cases, 3,209 European ancestry controls	874 European ancestry cases, 6,911 European ancestry controls	6q11.1	NR	rs2342002-T	0.214	9E-7		1.22	[1.13-1.33]	Illumina [922031]	N
1057	chr6	61951859	61951860	rs2342002	24121790	Levine DM	2013-10-13	Nat Genet	A genome-wide association study identifies new susceptibility loci for esophageal adenocarcinoma and Barrett's esophagus.	Digestive system disease (Barrett's esophagus and esophageal adenocarcinoma combined)	3,928 European ancestry cases, 3,207 European ancestry controls	1,636 European ancestry cases, 6,911 European ancestry controls	6q11.1	NR	rs2342002-T	0.214	7E-6		1.15	[1.08-1.23]	Illumina [922031]	N
1058	chr6	62013240	62013241	rs75515262	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	6q11.1	intergenic	rs75515262-G	0.0192537344559896	7E-8	(G_Alloprevotella_RNT)	0.974878	[0.62-1.33] unit decrease	Illumina [7711310] (imputed)	N
1058	chr6	62024376	62024377	rs9378078	29064910	Kure Fischer E	2017-10-23	Int Clin Psychopharmacol	A molecular pathway analysis informs the genetic risk for arrhythmias during antipsychotic treatment.	Antipsychotic drug-induced QTc interval change in schizophrenia	434 European ancestry individuals, 202 African ancestry individuals, 25 individuals	NA	6q11.1	NR	rs9378078-T	NR	7E-6		6700.0	unit decrease	Affymetrix, Perlegen [1785543] (imputed)	N
1058	chr6	62118929	62118930	rs9404922	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA			rs9404922-C	NR	6E-9		0.0108	[0.0073-0.0143] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
1059	chr6	62180485	62180486	rs112894788	32918910	Dong J	2020-09-09	Gastroenterology	Sex-Specific Genetic Associations for Barrett's Esophagus and Esophageal Adenocarcinoma.	Barrett's esophagus or esophageal adenocarcinoma x sex interaction (2df test)	6,758 European ancestry male cases, 1,670 European ancestry female cases, 7,489 European ancestry male controls, 6,174 European ancestry female controls	NA	6q11.1	MTRNR2L9	rs112894788-T	NR	7E-9				Illumina [up to 9353006] (imputed)	N
1059	chr6	62180485	62180486	rs112894788	32918910	Dong J	2020-09-09	Gastroenterology	Sex-Specific Genetic Associations for Barrett's Esophagus and Esophageal Adenocarcinoma.	Barrett's esophagus  or Esophageal adenocarcinoma	6,758 European ancestry male cases, 1,670 European ancestry female cases, 7,489 European ancestry male controls, 6,174 European ancestry female controls	NA	6q11.1	MTRNR2L9	rs112894788-T	NR	4E-9	(male)	0.84	[0.79-0.89]	Illumina [up to 9353006] (imputed)	N
1059	chr6	62180485	62180486	rs112894788	32918910	Dong J	2020-09-09	Gastroenterology	Sex-Specific Genetic Associations for Barrett's Esophagus and Esophageal Adenocarcinoma.	Barrett's esophagus  or Esophageal adenocarcinoma	6,758 European ancestry male cases, 1,670 European ancestry female cases, 7,489 European ancestry male controls, 6,174 European ancestry female controls	NA	6q11.1	MTRNR2L9	rs112894788-T	NR	3E-9		0.84	[0.79-0.89]	Illumina [up to 9353006] (imputed)	N
1059	chr6	62195367	62195368	rs62423175	27527254	Gharahkhani P	2016-08-12	Lancet Oncol	Genome-wide association studies in oesophageal adenocarcinoma and Barrett's oesophagus: a large-scale meta-analysis.	Barrett's esophagus  or Esophageal adenocarcinoma	6,167 European ancestry Barrett's oesophagus cases, 4,112 European ancestry esophageal adenocarcinoma cases, 17,159 European ancestry controls	NA	6q11.1	KHDRBS2, MTRNR2L9	rs62423175-A		3E-9		1.17	[1.11-1.23]	Illumina [11951684] (imputed)	N
1059	chr6	62200644	62200645	rs2880866	32918910	Dong J	2020-09-09	Gastroenterology	Sex-Specific Genetic Associations for Barrett's Esophagus and Esophageal Adenocarcinoma.	Barrett's esophagus or esophageal adenocarcinoma x sex interaction (2df test)	6,758 European ancestry male cases, 1,670 European ancestry female cases, 7,489 European ancestry male controls, 6,174 European ancestry female controls	NA	6q11.1	MTRNR2L9	rs2880866-T	NR	2E-8				Illumina [up to 9353006] (imputed)	N
1059	chr6	62200644	62200645	rs2880866	32918910	Dong J	2020-09-09	Gastroenterology	Sex-Specific Genetic Associations for Barrett's Esophagus and Esophageal Adenocarcinoma.	Barrett's esophagus  or Esophageal adenocarcinoma	6,758 European ancestry male cases, 1,670 European ancestry female cases, 7,489 European ancestry male controls, 6,174 European ancestry female controls	NA	6q11.1	MTRNR2L9	rs2880866-T	NR	1E-8		1.19	[1.12-1.26]	Illumina [up to 9353006] (imputed)	N
1059	chr6	62206676	62206677	rs12205562	33491795	Timmer T	2021-01-25	Vox Sang	Genetic determinants of ferritin, haemoglobin levels and haemoglobin trajectories: results from Donor InSight.	Hemoglobin levels	2,649 European ancestry individuals	NA	6q11.1	MTRNR2L9	rs12205562-G	0.026	2E-6		0.26	[0.37-0.15] unit decrease	Affymetrix [7435577] (imputed)	N
1059	chr6	62213146	62213147	rs144001526	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	6q11.1	NR	rs144001526-?	NR	2E-8				Illumina [7760689] (imputed)	N
1059	chr6	62216416	62216417	rs144961578	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	6q11.1	intergenic	rs144961578-A	0.072	4E-6		0.062	[0.037-0.087] unit increase	Affymetrix [7947838] (imputed)	N
1060	chr6	62372100	62372101	rs140996952	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	6q11.1	Intergenic	rs140996952-T	NR	9E-7	(between families)	4.912	unit decrease	Affymetrix [up to 15107142] (imputed)	N
1060	chr6	62378297	62378298	rs150013448	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	6q11.1		rs150013448-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1060	chr6	62378644	62378645	rs17834760	29064910	Kure Fischer E	2017-10-23	Int Clin Psychopharmacol	A molecular pathway analysis informs the genetic risk for arrhythmias during antipsychotic treatment.	Antipsychotic drug-induced QTc interval change in schizophrenia	434 European ancestry individuals, 202 African ancestry individuals, 25 individuals	NA	6q11.1	NR	rs17834760-G	NR	7E-6		1520.0	unit decrease	Affymetrix, Perlegen [1785543] (imputed)	N
1061	chr6	62391538	62391543	rs76014404	27527254	Gharahkhani P	2016-08-12	Lancet Oncol	Genome-wide association studies in oesophageal adenocarcinoma and Barrett's oesophagus: a large-scale meta-analysis.	Esophageal adenocarcinoma	4,112 European ancestry cases, 17,159 European ancestry controls	NA	6q11.1	KHDRBS2	rs76014404-T		2E-8		1.2102	[1.14-1.28]	Illumina [13074274] (imputed)	N
1061	chr6	62410330	62410331	rs1204134	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6q11.1	GLULD1	rs1204134-?	NR	9E-6	(creatine)	0.19879016	[0.11-0.29] unit increase	Affymetrix [at least 2500000] (imputed)	N
1061	chr6	62453682	62453682	rs202139281	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	6q11.1	NR	rs202139281-I	0.216327	3E-10		0.01502	[0.01-0.02] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
1061	chr6	62508919	62508920	rs2065065	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	6q11.1	NR	rs2065065-G	0.215046	1E-11		0.015712	[0.011-0.02] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
1062	chr6	62532124	62532125	rs59899220	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	6q11.1		rs59899220-?	NR	5E-10				NR [~ 8900000] (imputed)	N
1062	chr6	62589166	62589167	rs1931814	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	6q11.1	KHDRBS2	rs1931814-A	0.4787	3E-13		1.0267515		Affymetrix [11880941] (imputed)	N
1062	chr6	62589166	62589167	rs1931814	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	6q11.1		rs1931814-?	NR	1E-7				NR [~ 8900000] (imputed)	N
1063	chr6	62683122	62683123	rs12524852	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Sunburns	approximately 344,000 European ancestry individuals	NA	6q11.1		rs12524852-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1063	chr6	62697745	62697746	rs6455128	18464913	Melzer D	2008-05-09	PLoS Genet	A genome-wide association study identifies protein quantitative trait loci (pQTLs).	Protein quantitative trait loci	1,200 European ancestry individuals	up to 4,590 European ancestry individuals	6q11.1	KHDRBS2	rs6455128-?	0.19	3E-7	(GOT (AST))			Illumina [496032]	N
1063	chr6	62701624	62701625	rs6908169	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	6q11.1	Intergenic	rs6908169-C	0.4247	2E-8		0.0111	[0.0072-0.015] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1063	chr6	62707756	62707757	rs998808	29064910	Kure Fischer E	2017-10-23	Int Clin Psychopharmacol	A molecular pathway analysis informs the genetic risk for arrhythmias during antipsychotic treatment.	Antipsychotic drug-induced QTc interval change in schizophrenia	434 European ancestry individuals, 202 African ancestry individuals, 25 individuals	NA	6q11.1	NR	rs998808-A	NR	7E-6		6910.0	unit decrease	Affymetrix, Perlegen [1785543] (imputed)	N
1063	chr6	62712093	62712094	rs11324540	28654678	Mandage R	2017-06-27	PLoS One	Genetic factors affecting EBV copy number in lymphoblastoid cell lines derived from the 1000 Genome Project samples.	Epstein-Barr virus copy number in lymphoblastoid cell lines	389 East Asian ancestry individuals, 189 South Asian ancestry individuals, 492 European ancestry individuals, 467 Sub-Saharan African ancestry individuals, 59 African American individuals, 157 Hispanic/Latino individuals	NA	6q11.1	KHDRBS2	rs11324540-?	NR	2E-6	(East and South Asian)			NR [at least 880000]	N
1064	chr6	62808738	62808739	rs3904142	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6q11.1	NR	rs3904142-T	0.35	1E-5	(IFNGR1_of_monocytes)			Illumina [5084123] (imputed)	N
1064	chr6	62849467	62849467	rs764042828	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	6q11.1	NR	rs764042828-?		5E-9		0.0139759	[0.0093-0.0187] unit increase	Affymetrix [19400418] (imputed)	N
1064	chr6	62860538	62860539	rs9363882	29064910	Kure Fischer E	2017-10-23	Int Clin Psychopharmacol	A molecular pathway analysis informs the genetic risk for arrhythmias during antipsychotic treatment.	Antipsychotic drug-induced QTc interval change in schizophrenia	434 European ancestry individuals, 202 African ancestry individuals, 25 individuals	NA	6q11.1	NR	rs9363882-T	NR	7E-6		5350.0	unit decrease	Affymetrix, Perlegen [1785543] (imputed)	N
1064	chr6	62865024	62865025	rs10223780	30306274	Shah RL	2018-10-10	Hum Genet	Genome-wide association studies for corneal and refractive astigmatism in UK Biobank demonstrate a shared role for myopia susceptibility loci.	Corneal astigmatism	69,140 European ancestry cases, 17,195 European ancestry controls	NA	6q11.1	KHDRBS2	rs10223780-G	NR	4E-6		1.059	[1.035-1.083]	NR [5921785] (imputed)	N
1064	chr6	62896040	62896041	rs78279464	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6q11.1	NR	rs78279464-G	0.0122	2E-8	(MPO)	0.1387	NR unit decrease	Illumina [1671387] (imputed)	N
1065	chr6	62950567	62950567	rs200082850	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	beta-nerve growth factor levels	3,531 Finnish ancestry individuals	NA	6q11.1	NR	rs200082850-ATG		1E-7		0.1363	[0.086-0.187] SD units decrease	NR [10700000] (imputed)	N
1065	chr6	62967716	62967717	rs855408	28654678	Mandage R	2017-06-27	PLoS One	Genetic factors affecting EBV copy number in lymphoblastoid cell lines derived from the 1000 Genome Project samples.	Epstein-Barr virus copy number in lymphoblastoid cell lines	389 East Asian ancestry individuals, 189 South Asian ancestry individuals, 492 European ancestry individuals, 467 Sub-Saharan African ancestry individuals, 59 African American individuals, 157 Hispanic/Latino individuals	NA	6q11.1	KHDRBS2	rs855408-?	NR	9E-6	(East and South Asian)			NR [at least 880000]	N
1065	chr6	62974007	62974008	rs34540100	27098658	Muller-Calleja N	2016-04-21	Thromb Haemost	Antiphospholipid antibodies in a large population-based cohort: genome-wide associations and effects on monocyte gene expression.	Presence of antiphospholipid antibodies	4,163 German ancestry individuals	NA	6q11.1	KHDRBS2	rs34540100-?	NR	4E-6	(Anti-?2GPI domain 1 IgG)			Affymetrix [at least 662405]	N
1065	chr6	63019779	63019779	rs1411588273	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6q11.1	NR	rs1411588273-G	0.01045	2E-9	(MPO)	0.166	NR unit decrease	Illumina [1671387] (imputed)	N
1066	chr6	63114681	63114682	rs2814679	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6q11.1	NR	rs2814679-G	0.362	9E-6	(IFNGR1_of_monocytes)			Illumina [5084123] (imputed)	N
1066	chr6	63160146	63160147	rs682238	20705733	O'Seaghdha CM	2010-08-12	Hum Mol Genet	Common variants in the calcium-sensing receptor gene are associated with total serum calcium levels.	Calcium levels	20,611 European ancestry individuals	NA	6q11.1	intergenic	rs682238-C	NR	3E-6		0.03	[NR] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1066	chr6	63170072	63170073	rs12154141	28654678	Mandage R	2017-06-27	PLoS One	Genetic factors affecting EBV copy number in lymphoblastoid cell lines derived from the 1000 Genome Project samples.	Epstein-Barr virus copy number in lymphoblastoid cell lines	389 East Asian ancestry individuals, 189 South Asian ancestry individuals, 492 European ancestry individuals, 467 Sub-Saharan African ancestry individuals, 59 African American individuals, 157 Hispanic/Latino individuals	NA	6q11.1	KHDRBS2, LGSN	rs12154141-?	NR	4E-7	(East and South Asian)			NR [at least 880000]	N
1067	chr6	63193677	63193678	rs1334726	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	beta-nerve growth factor levels	3,531 Finnish ancestry individuals	NA	6q11.1	NR	rs1334726-G		9E-6		0.1153	[0.064-0.166] SD units decrease	NR [10700000] (imputed)	N
1067	chr6	63209940	63209941	rs2345981	30941828	Bi X	2019-04-03	Genet Epidemiol	Common genetic variants have associations with human cortical brain regions and risk of schizophrenia.	Cortical brain region measurements (area, volume and thickness)	901 children and adolescents	812 children and adolescents	6q11.1		rs2345981-A	0.310	9E-7	(Left frontal pole (volume))	34.98	[21.04-48.92] mm3 increase	Affymetrix, Illumina [260781]	N
1067	chr6	63230739	63230740	rs6914428	31712720	Forstner AJ	2019-11-11	Mol Psychiatry	Genome-wide association study of panic disorder reveals genetic overlap with neuroticism and depression.	Panic disorder	2,147 European ancestry cases, 7,760 European ancestry controls	2,408 European ancestry cases, 228,470 European ancestry controls	6q11.1	intergenic	rs6914428-G	NR	5E-6		1.1764705	NR	Illumina [8757275] (imputed)	N
1071	chr6	63711071	63711071	rs756368126	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first birth	542,901 European ancestry individuals	NA	6q12	LGSN	rs756368126-A	0.6467	3E-8		0.0586	[0.038-0.079] unit decrease	NR [9744772] (imputed)	N
1071	chr6	63803187	63803188	rs789942	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6q12	GLULD1, LGSN	rs789942-C	0.412	5E-6	(Hip circumference change )	0.04	[NR] cm/y increase	Illumina [899892]	N
1071	chr6	63826981	63826982	rs810967	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	6q12	NR	rs810967-?	NR	1E-7				Affymetrix [NR]	N
1072	chr6	63858607	63858608	rs2047898	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	6q12	NR	rs2047898-?	NR	8E-9				Illumina [7760689] (imputed)	N
1072	chr6	63947421	63947422	rs1504377	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Intake of sweets	21,447 European ancestry individuals	NA	6q12	FKBP1C	rs1504377-T	0.24	2E-6		0.06	[0.04-0.08] handful of candies/day increase	Affymetrix [10353649] (imputed)	N
1073	chr6	63990647	63990648	rs35296992	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6q12	NR	rs35296992-?	NR	1E-7		0.7474	[0.44-1.05] unit decrease	Illumina [at least 560000] (imputed)	N
1074	chr6	64120904	64120905	rs75566472	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6q12	NR	rs75566472-?	NR	7E-7		0.6688	[0.38-0.95] unit increase	Illumina [at least 560000] (imputed)	N
1074	chr6	64126179	64126180	rs9341835	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	6q12	NR	rs9341835-C	NR	4E-6		1.0526316	[NR]	Illumina [7158791] (imputed)	N
1074	chr6	64163806	64163807	rs9449295	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	6q12	NR	rs9449295-C	0.5169	4E-8		0.0216	[0.014-0.029] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1074	chr6	64184963	64184964	rs12213364	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	6q12		rs12213364-C	NR	3E-8		0.0105	[0.0068-0.0142] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1074	chr6	64190277	64190278	rs2622276	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6q12	NR	rs2622276-?	NR	6E-10				Affymetrix [~ 8270000] (imputed)	N
1074	chr6	64190277	64190278	rs2622276	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	6q12		rs2622276-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1074	chr6	64196587	64196587	rs533610689	34103634	Valette K	2021-06-08	Commun Biol	Prioritization of candidate causal genes for asthma in susceptibility loci derived from UK Biobank.	Asthma	56,167 White-British ancestry cases, 352,255 White-British ancestry controls	NA	6q12	LGSN, PTP4A1	rs533610689-CT	0.431563287914244	6E-9		0.038718596	[0.026-0.052] unit decrease	Affymetrix [35186738] (imputed)	N
1074	chr6	64210482	64210483	rs1779774	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Respiratory diseases	approximately 459,000 European ancestry individuals	NA	6q12		rs1779774-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1075	chr6	64240515	64240516	rs2622274	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	6q12	NA	rs2622274-T	0.4553	3E-10		0.0107	[0.0074-0.014] unit decrease	NR [~ 27400000] (imputed)	N
1075	chr6	64253621	64253622	rs35141718	31830031	Chernus JM	2019-12-12	PLoS Genet	A candidate gene analysis and GWAS for genes associated with maternal nondisjunction of chromosome 21.	Maternal nondisjunction of chromosome 21 (mothers vs fathers)	705 mothers, 645 fathers	NA	6q12	NR	rs35141718-?		2E-6		2.0833335	[NR]	Illumina [NR] (imputed)	N
1075	chr6	64270789	64270790	rs1681967	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	6q12	NR	rs1681967-A	0.917823	6E-10		0.0149523	[0.01-0.02] unit increase	Affymetrix [16578495] (imputed)	N
1076	chr6	64367372	64367373	rs1884117	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs Tourette's syndrome and other tic disorders (ordinary least squares (OLS))	40,675 schizophrenia cases, 4,819 Tourette's syndrome cases	NA	6q12		rs1884117-?	NR	5E-8		0.0201	NR unit decrease	NR [4502103] (imputed)	N
1076	chr6	64386059	64386060	rs10485358	30571770	Arnau-Soler A	2018-12-20	PLoS One	Genome-wide interaction study of a proxy for stress-sensitivity and its prediction of major depressive disorder.	Stress sensitivity (neuroticism score x major depressive disorder status interaction)	9,844 European ancestry cases, 20,403 European ancestry controls	NA	6q12	PHF3	rs10485358-A	NR	5E-6		4.546	NR z score decrease	Affymetrix [at least 557813] (imputed)	N
1076	chr6	64474383	64474384	rs1889096	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	6q12		rs1889096-A	0.394762	7E-9		0.0160549	[0.011-0.021] unit decrease	Illumina [13479924] (imputed)	N
1076	chr6	64487246	64487247	rs319924	30571770	Arnau-Soler A	2018-12-20	PLoS One	Genome-wide interaction study of a proxy for stress-sensitivity and its prediction of major depressive disorder.	Stress sensitivity (neuroticism score x major depressive disorder status interaction)	9,844 European ancestry cases, 20,403 European ancestry controls	NA	6q12	EYS	rs319924-A	NR	5E-7		5.024	NR z score increase	Affymetrix [at least 557813] (imputed)	N
1077	chr6	64596748	64596749	rs116712252	32131869	Arbeeva L	2020-03-04	J Foot Ankle Res	Genome-wide meta-analysis identified novel variant associated with hallux valgus in Caucasians.	Hallux valgus	1,705 European ancestry female cases, 1,945 European ancestry female controls	NA	6q12	EYS	rs116712252-G	0.99	2E-6		11.111111	[4.17-33.33]	Affymetrix, Illumina [up to 7729175] (imputed)	N
1078	chr6	64705609	64705610	rs148546399	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	6q12	EYS	rs148546399-A	0.054	1E-9	(Japanese)	0.05	[0.034-0.066] unit increase	Illumina [6108953] (imputed)	N
1078	chr6	64728484	64728485	rs9353437	34698592	Yang J	2021-10-26	Stress	Genome-wide association studies of stress score in a Korean Cohort.	High general stress	8,104 Korean ancestry individuals	NA	6q12		rs9353437-T	NR	6E-6		0.84	[0.78-0.91]	Affymetrix [320700]	N
1078	chr6	64733936	64733937	rs766981289	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Retinitis pigmentosa	155 East Asian ancestry cases, 168,903 East Asian ancestry controls	NA	6q12		rs766981289-T	0.006617454	9E-9		6.66436	[4.39-8.94] unit increase	Illumina [13428559] (imputed)	N
1078	chr6	64733936	64733937	rs766981289	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Retinitis pigmentosa	121 European ancestry cases, 126,333 European ancestry controls, 155 East Asian ancestry cases, 168,903 East Asian ancestry controls	NA	6q12		rs766981289-T	NR	9E-9		6.6644	[4.39-8.94] unit increase	Illumina [23539365] (imputed)	N
1079	chr6	64750277	64750278	rs9344688	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Experiencing mood swings	373,733 European ancestry individuals	NA	6q12	EYS	rs9344688-A	0.351818	9E-9		5.75	z score increase	NR [10847151] (imputed)	N
1079	chr6	64762195	64762196	rs74393339	34154395	Brikell I	2021-06-22	Am J Psychiatry	Genetic, Clinical, and Sociodemographic Factors Associated With Stimulant Treatment Outcomes in ADHD.	Switch to non-stimulant treatment in ADHD	1,137 European ancestry cases, 3,854 European ancestry controls	NA	6q12		rs74393339-T	0.041	9E-6		0.084	[0.047-0.121] unit increase	Illumina [6361597] (imputed)	N
1079	chr6	64764840	64764841	rs3013158	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	6q12		rs3013158-A	0.30628	3E-7		0.037713	[0.023-0.052] unit increase	Affymetrix [15580782] (imputed)	N
1079	chr6	64791407	64791408	rs9342117	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	6q12	NR	rs9342117-?	NR	9E-10		1.0582347	[1.04-1.08]	Affymetrix, Illumina [12447948] (imputed)	N
1079	chr6	64809536	64809537	rs6900114	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	6q12	NR	rs6900114-A	NR	2E-8		0.01464	[0.0095-0.0198] unit decrease	Affymetrix [10847151] (imputed)	N
1079	chr6	64842959	64842960	rs3013169	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	6q12	intergenic	rs3013169-T	NR	3E-6	(Chinese)	1.091703	[1.05-1.13]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1079	chr6	64846843	64846844	rs3003674	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	6q12		rs3003674-C	0.32417	1E-6		0.035113	[0.021-0.049] unit increase	Affymetrix [15580782] (imputed)	N
1079	chr6	64866856	64866857	rs6903570	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	6q12	EYS	rs6903570-C	NR	2E-8		1.0582011	[1.04-1.08]	Illumina [6627481] (imputed)	N
1079	chr6	64866856	64866857	rs6903570	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	6q12	EYS, PHF3, PTP4A1	rs6903570-C	NR	3E-8		1.0559661	[1.04-1.08]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1080	chr6	64886319	64886320	rs35906288	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Experiencing mood swings	373,733 European ancestry individuals	NA	6q12	NR	rs35906288-A	0.298033	3E-8		5.52	z score increase	NR [10847151] (imputed)	N
1080	chr6	64934705	64934706	rs116170288	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		EYS	rs116170288-?	NR	3E-8		1.99597	[NR] unit increase	Affymetrix [NR] (imputed)	N
1080	chr6	64951446	64951447	rs9353651	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6q12	Intergenic	rs9353651-A	0.3083	5E-8	(MTAG)	0.0077	[0.005-0.0104] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1080	chr6	64985344	64985344	rs367970233	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	6q12		rs367970233-CT	0.63567	3E-6		0.032351	[0.019-0.046] unit decrease	Affymetrix [15580782] (imputed)	N
1080	chr6	65005227	65005228	rs199640474	26423011	Wain LV	2015-09-27	Lancet Respir Med	Novel insights into the genetics of smoking behaviour, lung function, and chronic obstructive pulmonary disease (UK BiLEVE): a genetic association study in UK Biobank.	Lung function in never smokers (high FEV1 vs average FEV1)	4,902 European ancestry individuals with high FEV1 measurements, 9,827 European ancestry individuals with average FEV1 measurements	NA	6q12	EYS	rs199640474-G	0.327	1E-7		1.166	[1.102-1.235]	Affymetrix [28509962] (imputed)	N
1081	chr6	65013121	65013122	rs11753319	32066700	Zhang R	2020-02-05	Transl Psychiatry	Genome-wide study of immune biomarkers in cerebrospinal fluid and serum from patients with bipolar disorder and controls.	Cerebrospinal fluid immune biomarker levels	114 Scandinavian ancestry bipolar disorder cases, 83 Scandinavian ancestry controls	NA	6q12	EYS	rs11753319-C	0.951	3E-8	(YKL-40)	39.387	NR unit decrease	Affymetrix, Illumina [> 5600000] (imputed)	N
1081	chr6	65061751	65061752	rs683576	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	6q12		rs683576-T	0.68238	4E-6		0.033856	[0.02-0.048] unit decrease	Affymetrix [15580782] (imputed)	N
1081	chr6	65079629	65079630	rs655613	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	6q12	Intergenic	rs655613-C	0.342	2E-16		0.0169	[0.013-0.021] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1081	chr6	65079629	65079630	rs655613	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	6q12	Intergenic	rs655613-C	0.3419	3E-10		0.015	[0.01-0.02] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1082	chr6	65149184	65149185	rs9353806	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Experiencing mood swings	373,733 European ancestry individuals	NA	6q12	EYS	rs9353806-A	0.291026	1E-8		5.69	z score decrease	NR [10847151] (imputed)	N
1082	chr6	65163666	65163667	rs6926262	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	6q12		rs6926262-A	0.31645	4E-6		0.03357	[0.019-0.048] unit increase	Affymetrix [15580782] (imputed)	N
1082	chr6	65204952	65204953	rs9451766	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	6q12	Intergenic	rs9451766-?	NR	3E-6		2.795	[NR]	Affymetrix [492217] (imputed)	N
1083	chr6	65291643	65291644	rs12660387	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	6q12	intergenic	rs12660387-A	NR	9E-6	(Chinese)	1.106	[1.06-1.15]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1083	chr6	65298550	65298551	rs665873	25200001	Robinson PC	2014-09-08	Arthritis Rheumatol	Genetic dissection of acute anterior uveitis reveals similarities and differences in associations observed with ankylosing spondylitis.	Acute anterior uveitis (with or without ankylosing spondylitis)	238 European ancestry primary acute anterior uveitis cases, 1,199 European ancestry cases with acute anterior uveitis and ankylosing spondylitis, 9,564 European ancestry controls	NR	6q12	EYS	rs665873-A	0.98	5E-6		2.03	[1.48-2.79]	Illumina [at least 106525] (imputed)	N
1083	chr6	65303099	65303100	rs17404123	32752121	Nedoszytko B	2020-07-31	Int J Mol Sci	Results from a Genome-Wide Association Study (GWAS) in Mastocytosis Reveal New Gene Polymorphisms Associated with WHO Subgroups.	Systemic mastocytosis	93 European ancestry cases, 5,606 European ancestry controls	NA	6q12	EYS	rs17404123-C	0.1065	9E-8		2.516	[2.17-2.87]	Illumina [281811]	N
1083	chr6	65343239	65343240	rs9345325	34241534	Lu Y	2021-07-09	Circ Genom Precis Med	Multiethnic Genome-wide Association Study of Subclinical Atherosclerosis in Individuals with Type 2 Diabetes.	Coronary artery calcification in type 2 diabetes (excluding prevalent cardiovascular disease)	1,248 African American individuals	NA	6q12		rs9345325-T	0.05	5E-7		1.12	[0.69-1.55] unit increase	Affymetrix, Illumina [19600000] (imputed)	N
1083	chr6	65381177	65381178	rs9452326	32489964	Cresci S	2020-01-03	J Lipid Atheroscler	Genetic Architecture of Circulating Very-Long-Chain (C24:0 and C22:0) Ceramide Concentrations.	Ceramide levels (C22:0)	2,217 European ancestry individuals	NA	6q12	EYS	rs9452326-?	NR	9E-6	(conditioned on rs4814175)	0.023	[0.013-0.033] unit decrease	Affymetrix [9346801] (imputed)	N
1084	chr6	65432282	65432283	rs1889497	24980573	Song F	2014-06-30	Carcinogenesis	Identification of a melanoma susceptibility locus and somatic mutation in TET2.	Melanoma	494 European ancestry cases, 5,628 European ancestry controls	5,383 European ancestry cases, 13,033 European ancestry controls	6q12	EYS	rs1889497-?		2E-6		1.1494	[1.09-1.22]	Affymetrix, Illumina [1579307] (imputed)	N
1084	chr6	65458586	65458587	rs78824139	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6q12	EYS	rs78824139-C	0.986	9E-6		0.294	[0.16-0.42] unit increase	Affymetrix, Illumina [7374092] (imputed)	N
1084	chr6	65482439	65482440	rs7774229	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Coffee consumption	335,909 European ancestry individuals	39,924 European ancestry individuals	6q12	EYS	rs7774229-G	0.9256	7E-6		0.0127	[0.0072-0.0182] unit increase	Affymetrix [~ 7740000] (imputed)	N
1084	chr6	65511280	65511281	rs9345521	29109912	Rawofi L	2017-11-02	PeerJ	Genome-wide association study of pigmentary traits (skin and iris color) in individuals of East Asian ancestry.	Iris color (a* coordinate)	377 East Asian ancestry individuals	NA	6q12	EYS	rs9345521-A	0.466593	3E-6		0.352	[0.21-0.5] unit increase	Illumina [at least 520076] (imputed)	N
1084	chr6	65533065	65533066	rs10498828	28566273	Scott RA	2017-05-31	Diabetes	An Expanded Genome-Wide Association Study of Type 2 Diabetes in Europeans.	Type 2 diabetes	up to 26,676 European ancestry cases, up to 132,532 European ancestry controls	14,545 European ancestry cases, 38,994 European ancestry controls	6q12	NR	rs10498828-C	0.82	9E-6		1.0526316	[1.03-1.08]	Affymetrix, Illumina [at least 11579618] (imputed)	N
1085	chr6	65635922	65635923	rs11754641	22993228	Williams FM	2012-09-19	Ann Rheum Dis	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NA	6q12	intergenic	rs11754641-C	0.03	8E-6		0.29	[0.16-0.42] unit increase	Affymetrix, Illumina [2552511] (imputed)	N
1085	chr6	65662620	65662621	rs7767572	27490719	Bacelis J	2016-08-04	PLoS One	Literature-Informed Analysis of a Genome-Wide Association Study of Gestational Age in Norwegian Women and Children Suggests Involvement of Inflammatory Pathways.	Gestational age at birth in labor-initiated deliveries (child effect)	884 Norwegian ancestry children	NA	6q12	NR	rs7767572-G		3E-6				NR [525577]	N
1085	chr6	65662620	65662621	rs7767572	23934736	Yu B	2013-08-11	Genet Epidemiol	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels (Dihydroxy docosatrienoic acid)	1,260 African American individuals	NA	6q12	LOC727977	rs7767572-A		8E-6		0.1	[0.06-0.15] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1085	chr6	65663472	65663473	rs7738568	34162658	Quinn MC	2021-06-23	Cancer Epidemiol Biomarkers Prev	Identification of a locus near ULK1 associated with progression-free survival in ovarian cancer.	Progression free survival in serous epithelial ovarian cancer treated with carboplatin and paclitaxel	1,751 European ancestry individuals	NA	6q12	NR	rs7738568-T		2E-6		0.4707	[0.28-0.66] unit increase	Illumina [12759548] (imputed)	N
1086	chr6	65736914	65736915	rs201083182	27047539	Fridley BL	2016-03-22	Front Genet	Genome-Wide Study of Response to Platinum, Taxane, and Combination Therapy in Ovarian Cancer: In vitro Phenotypes, Inherited Variation, and Disease Recurrence.	Response to paclitaxel in ovarian cancer (Caspase 3/7 EC50)	74 lymphoblastoid cell lines	NA	6q12	EYS	rs201083182-?	NR	2E-6				Illumina [6243550] (imputed)	N
1086	chr6	65765051	65765052	rs78613394	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Anaeromassilibacillus sp001305115 abundance in stool	5,959 Finnish ancestry individuals	NA	6q12		rs78613394-G	0.0159511	3E-9		0.194369	[0.13-0.26] unit increase	Illumina [7980478] (imputed)	N
1086	chr6	65767094	65767095	rs9453167	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	6q12	NR	rs9453167-?	NR	7E-7				Affymetrix [NR]	N
1087	chr6	65887688	65887689	rs17578460	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	6q12	NR	rs17578460-?	NR	5E-6				Affymetrix [NR]	N
1088	chr6	65937214	65937215	rs704525	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	6q12	NR	rs704525-?	NR	6E-6				Affymetrix [NR]	N
1088	chr6	65985757	65985758	rs78726778	34854908	Veluchamy A	2021-12-01	JAMA Netw Open	Association of Genetic Variant at Chromosome 12q23.1 With Neuropathic Pain Susceptibility.	Neuropathic pain	4,512 European ancestry cases, 428,489 European ancestry controls	NA	6q12		rs78726778-T	0.933	2E-6		0.863	[0.813-0.916]	Affymetrix, Illumina [NR] (imputed)	N
1088	chr6	66045715	66045716	rs78484557	34014839	Page GP	2021-05-20	J Clin Invest	Multi-ancestry genome-wide association study identifies 27 loci associated with measures of hemolysis following blood storage.	hemolysis of donated blood (osmotic)	Up to 456 Mexican and Central American Hispanics individuals, Up to 489 Caribbean Island Hispanics individuals	NA	6q12	EYS	rs78484557-?	NR	3E-9		25.7	unit decrease	NR [14100000] (imputed)	N
1089	chr6	66086335	66086336	rs139401673	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 22)	2,187 European ancestry individuals	NA	6q12	NR	rs139401673-T	0.01421	4E-6		0.5868	[0.25-0.92] unit decrease	Illumina [10677593] (imputed)	N
1089	chr6	66088310	66088311	rs9453288	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	6-month creatinine clearance change response to tenofovir treatment in HIV infection (treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	6q12	NR	rs9453288-?		7E-6	(African)			Illumina [~ 5140000] (imputed)	N
1089	chr6	66099072	66099073	rs79431795	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6q12	NR	rs79431795-T	0.01742	4E-9	(NPC2)	0.06179	NR unit increase	Illumina [1671387] (imputed)	N
1089	chr6	66178479	66178480	rs4710520	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6q12	NR	rs4710520-C	0.00804562	3E-6	(IGP37)	2.1675	[1.26-3.08] unit increase	Illumina [~ 2500000] (imputed)	N
1089	chr6	66178479	66178480	rs4710520	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6q12	NR	rs4710520-C	0.00803558	6E-6	(IGP36)	2.107	[1.2-3.02] unit increase	Illumina [~ 2500000] (imputed)	N
1089	chr6	66178479	66178480	rs4710520	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6q12	NR	rs4710520-C	0.00803558	5E-6	(IGP38)	2.1251	[1.21-3.04] unit increase	Illumina [~ 2500000] (imputed)	N
1090	chr6	66199638	66199639	rs80158983	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption interaction (2df test)	63,608 European ancestry drinkers, 10,193 African American or Afro-Caribbean heavy drinkers,  2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,494 European ancestry non-drinkers, 11,224 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,002 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,452 Hispanic drinkers, 43,316 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,945 Asian ancestry non-drinkers, 6,925 Hispanic non-drinkers	6q12	EYS	rs80158983-T	0.02	7E-9	(AA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1090	chr6	66215548	66215549	rs7449561	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	6q12	Intergenic	rs7449561-A	0.2299	4E-9	(MTAG)	0.0115	[0.0076-0.0154] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1090	chr6	66215548	66215549	rs7449561	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6q12		rs7449561-A	0.226	1E-9		0.0102	[0.0069-0.0135] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1090	chr6	66215548	66215549	rs7449561	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6q12	Intergenic	rs7449561-A	0.226	1E-11	(MTAG)	0.0107	[0.0076-0.0138] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1090	chr6	66262055	66262056	rs4507566	29730043	Li J	2018-05-02	Schizophr Res	Identifying the genetic risk factors for treatment response to lurasidone by genome-wide association study: A meta-analysis of samples from three independent clinical trials.	Response to lurasidone in schizophrenia	264 European ancestry cases, 158 African American ancestry cases	NA	6q12	EGFL11	rs4507566-A	0.5584	2E-6		4.756	z score decrease	Affymetrix, Illumina [up to 1994688]	N
1091	chr6	66344854	66344855	rs1873291	32121467	Adewuyi EO	2020-02-29	Genes (Basel)	Shared Molecular Genetic Mechanisms Underlie Endometriosis and Migraine Comorbidity.	Endometriosis or migraine	17,054 European and Japanese ancestry endometriosis cases, 29,208 European ancestry migraine cases, 191,858 European and Japanese ancestry controls, 172,931 European ancestry controls	NA	6q12	NR	rs1873291-T	NR	3E-6	(random effect)	1.0416667	NR	NR [6904914] (imputed)	N
1091	chr6	66403836	66403837	rs12211518	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	6q12	NR	rs12211518-?	NR	1E-6				Affymetrix [NR]	N
1091	chr6	66414827	66414828	rs12526729	31219225	Young KA	2019-06-20	Obesity (Silver Spring)	Genome-Wide Association Study Identifies Loci for Liver Enzyme Concentrations in Mexican Americans: The GUARDIAN Consortium.	Gamma glutamyl transferase levels	1,577 Mexican American ancestry individuals	NA	6q12	EYS	rs12526729-?	NR	8E-6				Illumina [655023]	N
1091	chr6	66443542	66443543	rs12193519	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6q12	PHF3	rs12193519-?	NR	9E-6	(xanthine)	3.140252	[1.75-4.53] unit increase	Affymetrix [at least 2500000] (imputed)	N
1092	chr6	66565352	66565353	rs9354308	19043545	Gieger C	2008-11-28	PLoS Genet	Genetics meets metabolomics: a genome-wide association study of metabolite profiles in human serum.	Metabolite levels	284 European ancestry male individuals	NA	6q12	intergenic	rs9354308-?	0.37	3E-7	(serotonin)			Affymetrix [187454]	N
1092	chr6	66565702	66565703	rs9363467	30718901	Howard DM	2019-02-04	Nat Neurosci	Genome-wide meta-analysis of depression identifies 102 independent variants and highlights the importance of the prefrontal brain regions.	Depression	118,811 European ancestry cases, 327,427 European ancestry controls, 127,552 cases, 233,763 controls	414,055 European ancestry cases, 892,299 European ancestry controls	6q12	NR	rs9363467-T	0.6035	3E-12		1.016	[1.011-1.021]	NR [8098588] (imputed)	N
1093	chr6	66595930	66595931	rs9885896	32959083	Adewuyi EO	2020-09-21	Hum Genet	Genetic analysis of endometriosis and depression identifies shared loci and implicates causal links with gastric mucosa abnormality.	Endometriosis or depression (pleiotropy)	17,054 endometriosis cases, 170,756 European ancestry depression cases, 191,858 controls, 329,443 European ancestry controls	NA	6q12	NR	rs9885896-A		4E-9		0.0241602	[0.016-0.032] unit decrease	NR [6694342]	N
1093	chr6	66598193	66598194	rs10455590	22174851	Lingappa JR	2011-12-12	PLoS One	Genomewide association study for determinants of HIV-1 acquisition and viral set point in HIV-1 serodiscordant couples with quantified virus exposure.	HIV-1 viral setpoint	496 African ancestry cases	NA	6q12	AL391500.13, RP11-707M13.1	rs10455590-?	NR	2E-6				Illumina [990115]	N
1093	chr6	66618656	66618657	rs79976124	26818947	Imamura M	2016-01-28	Nat Commun	Genome-wide association studies in the Japanese population identify seven novel loci for type 2 diabetes.	Type 2 diabetes	15,463 Japanese ancestry cases, 26,183 Japanese ancestry controls	20,490 East Asian ancestry cases, 22,922 East Asian ancestry controls, 38,947 European ancestry cases, 121,903 European ancestry controls, 10,587 South Asian ancestry cases, 14,378 South Asian ancestry controls, 3,848 Mexican/Latino cases, 4,366 Mexican/Latino controls	6q12	ADH5P4	rs79976124-A	0.063	2E-6	(Japanese)	1.14	[1.08-1.12]	Illumina [7521072] (imputed)	N
1093	chr6	66624248	66624249	rs9345731	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Major depressive disorder (MTAG)	at least 170,756 European ancestry cases, at least 329,443 European ancestry controls	NA	6q12	NR	rs9345731-A	0.3419	2E-9		0.026019914	[0.018-0.034] unit decrease	NR [NR]	N
1093	chr6	66636227	66636228	rs62401971	33768542	Liu Y	2021-03-26	Clin Pharmacol Ther	Class II HLA Variants Associate with Risk of Pegaspargase Hypersensitivity.	Asparaginase hypersensitivity in acute lymphoblastic leukemia	310 African ancestry individuals, 798 Native American individuals, 387 individuals	NA	6q12	NR	rs62401971-C	NR	2E-7		2.27	[NR]	Illumina [NR] (imputed)	N
1093	chr6	66646737	66646738	rs76736233	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6q12	NR	rs76736233-C	0.1338	3E-7		0.009	[0.0055-0.0125] unit increase	NR [7666894] (imputed)	N
1093	chr6	66676937	66676938	rs9345737	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Help-seeking from a GP	113,262 British ancestry cases, 219,360 British ancestry controls	NA	6q12	NR	rs9345737-A	0.561	3E-9		1.0319917	[1.02-1.04]	NR [5276842] (imputed)	N
1093	chr6	66696271	66696272	rs9354352	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Initial pursuit acceleration in psychotic disorders	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases.	NA	6q12	SLC25A51P1	rs9354352-?	NR	2E-7				Illumina [4404269] (imputed)	N
1093	chr6	66697002	66697003	rs7766730	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Initial pursuit acceleration in psychotic disorders	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases.	NA	6q12	SLC25A51P1	rs7766730-?	NR	4E-7				Illumina [4404269] (imputed)	N
1093	chr6	66697838	66697839	rs4710305	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Ischemic stroke (cardioembolic)	174 Indian ancestry cases, 2,154 Indian ancestry controls	NA	6q12		rs4710305-?	NR	2E-6		1.0446945	[1.02623939519069-1.06348164132096]	Illumina [up to 7827597] (imputed)	N
1093	chr6	66701620	66701621	rs6455064	29703947	Jawinski P	2018-04-27	Mol Psychiatry	Human brain arousal in the resting state: a genome-wide association study.	Resting-state electroencephalogram vigilance	1,877 European ancestry individuals	NA	6q12	NUFIP1P	rs6455064-A	0.028	6E-6	(Slope index)	0.3807	[0.22-0.55] unit increase	Affymetrix [8042262] (imputed)	N
1095	chr6	66888912	66888913	rs114080299	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Chronic lymphocytic leukemia	764 White British ancestry cases, 272,079 White British ancestry controls	NA	6q12		rs114080299-?	NR	3E-6		2.14205	[1.82-2.46]	NR [663083]	N
1095	chr6	66907170	66907171	rs112319963	29698419	Pande M	2018-04-26	PLoS One	Genetic susceptibility markers for a breast-colorectal cancer phenotype: Exploratory results from genome-wide association studies.	Breast cancer and/or colorectal cancer	589 European ancestry colorectal cancer with a family history of breast cancer cases, 378 European ancestry breast cancer cases with a family history of colorectal cancer cases, 18 European ancestry breast and colorectal cancer cases, 1,769 European ancestry controls	NA	6q12	AC002485.1	rs112319963-?	0.01	2E-6		4.0	[2.22-7.69]	Illumina [6220060] (imputed)	N
1095	chr6	66929047	66929048	rs3857536	23720494	Evans DM	2013-05-29	Hum Mol Genet	Genome-wide association study identifies loci affecting blood copper, selenium and zinc.	Blood trace element (Cu levels)	2,603 European ancestry individuals	NA	6q12	EGFL11	rs3857536-?	NR	4E-6		0.129	[0.074-0.184] unit increase	Illumina [> 2500000] (imputed)	N
1095	chr6	66945748	66945749	rs208515	28109725	Fuchs O	2017-01-18	J Allergy Clin Immunol	6q12 and 11p14 variants are associated with postnatal exhaled nitric oxide levels and respiratory symptoms.	Exhaled nitric oxide levels	229 European ancestry infants		6q12	SLC25A51P1, EYS, LOC441155	rs208515-T	NR	2E-6		2.36	ppb increase	Illumina [567864]	N
1095	chr6	66952827	66952828	rs208520	28109725	Fuchs O	2017-01-18	J Allergy Clin Immunol	6q12 and 11p14 variants are associated with postnatal exhaled nitric oxide levels and respiratory symptoms.	Exhaled nitric oxide output	229 European ancestry infants		6q12	SLC25A51P1, EYS, LOC441155	rs208520-G	NR	7E-7		0.11	nL/s increase	Illumina [567864]	N
1096	chr6	66999916	66999917	rs12206488	32959083	Adewuyi EO	2020-09-21	Hum Genet	Genetic analysis of endometriosis and depression identifies shared loci and implicates causal links with gastric mucosa abnormality.	Endometriosis or depression (pleiotropy)	17,054 endometriosis cases, 170,756 European ancestry depression cases, 191,858 controls, 329,443 European ancestry controls	NA	6q12	NR	rs12206488-T		2E-9		0.0302724	[0.02-0.04] unit increase	NR [6694342]	N
1096	chr6	67000000	67000001	rs2214123	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Major depressive disorder (MTAG)	at least 170,756 European ancestry cases, at least 329,443 European ancestry controls	NA	6q12	NR	rs2214123-A	0.3534	1E-9		0.02636051	[0.018-0.035] unit increase	NR [NR]	N
1096	chr6	67000000	67000001	rs2214123	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	6q12	NR	rs2214123-G	0.642	6E-8		0.00618705	[0.0039-0.0084] unit decrease	NR [9732723] (imputed)	N
1096	chr6	67096906	67096907	rs9354421	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris color (b* coordinate)	329 South Asian ancestry individuals		6q12	intergenic	rs9354421-C	0.249	5E-6		0.431	[0.25-0.61] unit increase	Illumina [640625] (imputed)	N
1097	chr6	67184232	67184233	rs72891333	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Succinivibrio abundance in stool	5,959 Finnish ancestry individuals	NA	6q12		rs72891333-G	0.0721439	8E-9		0.109425	[0.072-0.147] unit increase	Illumina [7980478] (imputed)	N
1097	chr6	67230674	67230675	rs2812144	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6q12	BAI3	rs2812144-?	NR	7E-7	(xanthosine)	0.17891747	[0.11-0.25] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1097	chr6	67239354	67239355	rs111822942	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6q12	NR	rs111822942-T	0.01916	4E-9	(MT1H)	0.04737	NR unit increase	Illumina [1671387] (imputed)	N
1098	chr6	67248409	67248410	rs9445732	23322567	Lopes MC	2013-01-15	Invest Ophthalmol Vis Sci	Identification of a candidate gene for astigmatism.	Corneal astigmatism	22,100 European ancestry individuals		6q12	intergenic	rs9445732-G	0.05	2E-6		1.284	[NR] unit increase	Affymetrix, Illumina [2800000] (imputed)	N
1098	chr6	67269175	67269176	rs7753643	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Pursuit maintenance gain	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	6q12	SLC25A51P1	rs7753643-C	0.08	9E-6	(African)			Illumina [4404269] (imputed)	N
1098	chr6	67275634	67275635	rs9354444	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	6q12	NR	rs9354444-?	NR	9E-6				Affymetrix [NR]	N
1098	chr6	67338592	67338593	rs9360217	28115739	Smith AH	2017-01-24	Mol Psychiatry	Genome-wide association study of therapeutic opioid dosing identifies a novel locus upstream of OPRM1.	Methadone dose in opioid dependence	1,027 European American cases, 383 African American cases	NA	6q12	EYS	rs9360217-G	0.21618539435248307	7E-7	(EA)	0.2613	[0.16-0.36] unit decrease	Illumina [at least 988306] (imputed)	N
1099	chr6	67387489	67387490	rs555402748	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	6q12	SLC25A51P1	rs555402748-T	4.0E-4	5E-8		3.67	[2.30-5.86]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1099	chr6	67405336	67405337	rs10498846	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	6q12	LOC441155	rs10498846-T	0.5071	4E-8		0.012989797	[0.0084-0.0176] unit increase	Affymetrix [11515109] (imputed)	N
1099	chr6	67408867	67408868	rs12202507	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking initiation	842,717 European ancestry individuals	NA	6q12	SLC25A51P1, LOC102723883	rs12202507-C		9E-9		1.021	[NR]	Affymetrix [up to 79000000] (imputed)	N
1099	chr6	67419243	67419244	rs6455132	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6q12	BAI3	rs6455132-?	NR	4E-6	(PC 32:2)	0.4387248	[0.25-0.63] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1099	chr6	67419655	67419656	rs11750999	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	6q12		rs11750999-G	0.616	4E-21		0.012	[0.01-0.014] unit decrease	NR [NR] (imputed)	N
1099	chr6	67468361	67468362	rs9351595	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6q12		rs9351595-?	NR	7E-13				NR [~ 8900000] (imputed)	N
1099	chr6	67475272	67475273	rs12202536	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	6q12		rs12202536-A	0.513	3E-9		0.012	[0.0081-0.0159] unit decrease	Affymetrix [up to 90000000] (imputed)	N
1099	chr6	67487939	67487940	rs9354472	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip	15 Asian ancestry cases, 13 European ancestry cases, 15 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	6q12	NR	rs9354472-?	NR	1E-5		3.45	[2.66-4.46]	Illumina [539000] (imputed)	N
1099	chr6	67488355	67488356	rs12213996	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	6q12		rs12213996-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1099	chr6	67497829	67497830	rs4710625	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6q12	BAI3	rs4710625-?	NR	1E-6	(triiodothyronine)	0.1978844	[0.12-0.28] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1100	chr6	67509578	67509579	rs62417597	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	6q12	NR	rs62417597-T	0.384	7E-15		0.0116721	[0.0087-0.0146] unit decrease	NR [9732723] (imputed)	N
1100	chr6	67521100	67521101	rs9360234	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	6q12	LOC441155	rs9360234-A	0.2327	1E-8		0.013054708	[0.0086-0.0176] unit decrease	Illumina [9339358] (imputed)	N
1100	chr6	67521221	67521222	rs7743165	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	6q12	NR	rs7743165-G	0.495	4E-14		0.01925588	[0.014-0.024] unit increase	NR [~ 10000000] (imputed)	N
1100	chr6	67532064	67532065	rs4502920	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	6q12	NR	rs4502920-T	0.383	1E-19		0.0100702	[0.0079-0.0122] unit increase	NR [9732723] (imputed)	N
1100	chr6	67535393	67535405	rs200390855	31194736	Tiensuu H	2019-06-13	PLoS Genet	Risk of spontaneous preterm birth and fetal growth associates with fetal SLIT2.	Moderate-to-late spontaneous preterm birth	75 Finnish ancestry infant cases, 419 Finnish ancestry infant controls	NA	6q12	LOC107986540	rs200390855-?	NR	3E-6		3.01		Illumina [6778521] (imputed)	N
1100	chr6	67540983	67540984	rs79180767	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	6q12	NR	rs79180767-T	0.253	7E-12	(Conditioned on chr6:67521222)	0.020091945	[0.014-0.026] unit increase	NR [~ 10000000] (imputed)	N
1100	chr6	67546541	67546542	rs12205538	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking initiation (ever regular vs never regular)	up to 433,216 European ancestry individuals	NA	6q12	MCART3P	rs12205538-C	0.387	2E-9		0.0141	[0.0095-0.0187] unit increase	Illumina [~ 250000] (imputed)	N
1100	chr6	67549245	67549245	rs67532025	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	6q12	NR	rs67532025-?		5E-10		0.0137459	[0.0094-0.0181] unit decrease	Affymetrix [19400418] (imputed)	N
1100	chr6	67549450	67549451	rs12211126	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	6q12	LOC441155	rs12211126-T	0.5928	1E-9		0.012434233	[0.0084-0.0164] unit decrease	Affymetrix [11514654] (imputed)	N
1100	chr6	67583757	67583758	rs4357117	28753643	Yeo A	2017-07-28	PLoS One	Pharmacogenetic meta-analysis of baseline risk factors, pharmacodynamic, efficacy and tolerability endpoints from two large global cardiovascular outcomes trials for darapladib.	Moderate or severe diarrhoea in darapladib-treated cardiovascular disease (time to event)	212 European ancestry cases	NA	6q12	intergenic	rs4357117-T	0.0105	3E-8		6.19	[3.25-11.81]	Affymetrix, Illumina [9334585] (imputed)	N
1101	chr6	67649215	67649216	rs11970254	20171287	Stein JL	2010-02-17	Neuroimage	Voxelwise genome-wide association study (vGWAS).	Brain structure	740 European ancestry individuals	NA	6q12	intergenic	rs11970254-?	0.35	6E-7				Illumina [448293]	N
1101	chr6	67653278	67653279	rs28631020	23568457	Wade TD	2013-04-09	Int J Eat Disord	Genetic variants associated with disordered eating.	Bulimia nervosa	151 European ancestry female cases, 2,291 European ancestry female controls	NA	6q12	intergenic	rs28631020-G	0.925	3E-6		0.08	[0.047-0.113] unit decrease	Illumina [6150213] (imputed)	N
1101	chr6	67752169	67752170	rs11968427	33109212	Chang H	2020-10-28	BMC Med	Genetic architecture of cardiometabolic risks in people living with HIV.	Triglyceride levels in HIV infection	3,095 European ancestry individuals, 3,189 African American individuals	NA	6q12	SLC25A51P1, LOC102723883	rs11968427-?		5E-7	(EA)	0.40592232	[0.25-0.56] unit decrease	Illumina [13620258] (imputed)	N
1101	chr6	67752169	67752170	rs11968427	33109212	Chang H	2020-10-28	BMC Med	Genetic architecture of cardiometabolic risks in people living with HIV.	Triglyceride levels in HIV infection	3,095 European ancestry individuals, 3,189 African American individuals	NA	6q12	SLC25A51P1, LOC102723883	rs11968427-?		5E-7	(African American)	0.40592232	[0.25-0.56] unit decrease	Illumina [13620258] (imputed)	N
1102	chr6	67863781	67863782	rs9351637	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FEV1/FVC)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		6q12	SLC25A51P1, BAI3	rs9351637-T	0.61	3E-8	(EA)	0.002	[0.0012-0.0028] unit increase	Affymetrix, Illumina [10900000] (imputed)	N
1102	chr6	67885918	67885919	rs9342616	23534349	Jeff JM	2013-03-28	Ann Hum Genet	Generalization of variants identified by genome-wide association studies for electrocardiographic traits in African Americans.	QT interval	455 African American individuals	NA	6q12	intergenic	rs9342616-A		1E-6		6.92	[NR] ms decrease	Illumina [> 930000]	N
1103	chr6	67905202	67905203	rs12210560	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	6q12	ADGRB3	rs12210560-T	0.35	3E-12		0.0086	[0.0062-0.011] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
1103	chr6	67996671	67996672	rs72881923	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Fractional excretion of metabolites in chronic kidney disease	1,143 European ancestry cases	NA	6q12	SLC25A51P1, BAI3	rs72881923-C	NR	4E-8	(Dodecanoylcarnitine)	0.264461	[0.17-0.36] unit increase	Illumina [up to 9281895] (imputed)	N
1104	chr6	68029040	68029041	rs9363741	26528553	Davenport ER	2015-11-03	PLoS One	Genome-Wide Association Studies of the Human Gut Microbiota.	Gut microbiome composition (summer and winter)	127 Hutterite individuals	NA	6q12	NR	rs9363741-?		5E-7	(genus_Lachnobacterium)	0.8568937	[0.54-1.18] unit increase	Affymetrix [212153]	N
1104	chr6	68034459	68034460	rs35679777	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	Estradiol levels	4,191 European ancestry men, 2,607 European ancestry women	NA	6q12	NR	rs35679777-C	0.381	7E-9		0.0577234	[0.038-0.077] unit increase	Affymetrix [up to 8900000] (imputed)	N
1104	chr6	68034459	68034460	rs35679777	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	Estradiol levels	4,191 European ancestry men, 2,607 European ancestry women	NA	6q12	NR	rs35679777-C	0.3807	3E-6	(women)	0.0741314	[0.043-0.105] unit increase	Affymetrix [up to 8900000] (imputed)	N
1104	chr6	68098199	68098200	rs2374155	30591961	Huang L	2018-12-24	Sci China Life Sci	Genome-wide analysis identified 17 new loci influencing intraocular pressure in Chinese population.	Intraocular pressure	5,571 Chinese ancestry individuals	2,981 Chinese ancestry individuals	6q12	SLC25A51P1, LOC102723883	rs2374155-G	0.84	9E-9		5.76	NR z score decrease	Illumina [at least 900015] (imputed)	N
1104	chr6	68125254	68125255	rs9363753	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6q12	Intergenic	rs9363753-T	0.1831	1E-8	(MTAG)	0.0096	[0.0063-0.0129] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1105	chr6	68181696	68181697	rs4710654	22952603	Hart AB	2012-08-28	PLoS One	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 10 individuals	NA	6q12	intergenic	rs4710654-?	NR	8E-7	(SF2)			Affymetrix [5476100] (imputed)	N
1105	chr6	68223132	68223133	rs73449416	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	6q12	NR	rs73449416-A	NR	4E-7	(GEE model)	1.0698	[0.65-1.49] unit increase	NR [NR] (imputed)	N
1105	chr6	68242865	68242866	rs9294770	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6q12		rs9294770-T	0.3879	9E-9		0.0083	[0.0056-0.011] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1106	chr6	68306203	68306204	rs2747151	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	6q12		rs2747151-?	NR	5E-10				Affymetrix [NR] (imputed)	N
1106	chr6	68327029	68327030	rs875033	22952603	Hart AB	2012-08-28	PLoS One	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 10 individuals	NA	6q12	intergenic	rs875033-?	NR	8E-6	(SF2)			Affymetrix [5476100] (imputed)	N
1106	chr6	68375895	68375896	rs2818103	33235445	Lee YJ	2020-11-17	Int J Chron Obstruct Pulmon Dis	A Genome-Wide Association Study in Early COPD: Identification of One Major Susceptibility Loci.	Early chronic obstructive pulmonary disease	130 Korean ancestry cases, 3,478 Korean ancestry controls	NA	6q12	NR	rs2818103-?	NR	6E-7		2.03	NR	Affymetrix [345072]	N
1106	chr6	68379333	68379334	rs12524310	30014611	Weiss RB	2018-07-16	Ann Neurol	Long-range genomic regulators of THBS1 and LTBP4 modify disease severity in Duchenne muscular dystrophy.	Age at loss of ambulation in Duchenne muscular dystrophy	243 European ancestry cases, 10 cases	NA	6q12	NR	rs12524310-?	NR	9E-7	(EA)			Illumina [1735619]	N
1106	chr6	68379333	68379334	rs12524310	30014611	Weiss RB	2018-07-16	Ann Neurol	Long-range genomic regulators of THBS1 and LTBP4 modify disease severity in Duchenne muscular dystrophy.	Age at loss of ambulation in Duchenne muscular dystrophy	243 European ancestry cases, 10 cases	NA	6q12	NR	rs12524310-?	NR	4E-6				Illumina [1735619]	N
1107	chr6	68460986	68460987	rs9354627	33235445	Lee YJ	2020-11-17	Int J Chron Obstruct Pulmon Dis	A Genome-Wide Association Study in Early COPD: Identification of One Major Susceptibility Loci.	Early chronic obstructive pulmonary disease	130 Korean ancestry cases, 3,478 Korean ancestry controls	NA	6q12	NR	rs9354627-?	NR	7E-6		1.94	NR	Affymetrix [345072]	N
1107	chr6	68464842	68464843	rs573513257	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6q12	NR	rs573513257-?	NR	2E-6		4.745	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1107	chr6	68514110	68514111	rs9454297	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6q12		rs9454297-A	0.4766	2E-8	(conditional-joint)	0.0079	[0.0052-0.0106] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1108	chr6	68578366	68578367	rs59067831	34624637	Zainul Abidin FN	2021-09-21	Neuroimage Clin	Glucose hypometabolism in the Auditory Pathway in Age Related Hearing Loss in the ADNI cohort.	Age related hearing loss-related regional glucose metabolism (Cochlear nucleus)	228 European ancestry cases, 587 European ancestry controls	NA	6q12		rs59067831-?	NR	4E-6		0.532	[0.31-0.76] unit increase	Illumina [5082878] (imputed)	N
1108	chr6	68661408	68661409	rs140992857	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder	29,475 European ancestry cases, 63,482 European ancestry controls	NA	6q12	NR	rs140992857-A	0.0306898	8E-6		1.068	[1.04-1.1]	Affymetrix [7791636] (imputed)	N
1109	chr6	68707605	68707606	rs141790905	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	RANTES levels	3,421 Finnish ancestry individuals	NA	6q12	NR	rs141790905-C		5E-6		0.8301	[0.47-1.19] SD units increase	NR [10700000] (imputed)	N
1109	chr6	68713398	68713399	rs9354654	25763902	Draaken M	2015-03-12	PLoS Genet	Genome-wide association study and meta-analysis identify ISL1 as genome-wide significant susceptibility gene for bladder exstrophy.	Classic bladder exstrophy	208 European ancestry cases, 1,703 European ancestry controls	NA	6q12	NR	rs9354654-C	0.375	2E-6		1.67	[1.35-2.07]	Illumina [7261187] (imputed)	N
1109	chr6	68729129	68729130	rs4706314	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	6q12		rs4706314-C	0.463	3E-8		0.006	[0.004-0.008] unit decrease	NR [NR] (imputed)	N
1109	chr6	68807963	68807964	rs79059649	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter alcoholic beverage consumption	336,448 European ancestry individuals	39,924 European ancestry individuals	6q12	LOC102723883	rs79059649-T	0.9464	5E-6		0.0104	[0.0059-0.0149] unit increase	Affymetrix [~ 7740000] (imputed)	N
1110	chr6	68839524	68839525	rs142442230	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 5 levels	252 European ancestry individuals	NA	6q12		rs142442230-A	NR	7E-6		0.61178	[0.35-0.87] unit decrease	Illumina [NR] (imputed)	N
1110	chr6	68858946	68858947	rs777619	32562552	Chua KC	2020-06-20	Clin Pharmacol Ther	Genome-Wide Meta-Analysis Validates a Roless for S1PR1 in Microtubule Targeting Agent-Induced Sensory Peripheral Neuropathy.	Sensory peripheral neuropathy in microtubule targeting agent-treated breast cancer	1,324 European ancestry individuals	NA	6q12	ADGRB3	rs777619-?		8E-6		0.416	[NR] unit increase	Illumina [6030476] (imputed)	N
1110	chr6	68879789	68879790	rs1869714	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Blautia)	1,068 Japanese ancestry individuals	NA	6q12	intergenic	rs1869714-T	0.48	7E-6	(female)	0.0921	[0.052-0.132] unit increase	Illumina [6380737] (imputed)	N
1110	chr6	68929931	68929932	rs76778048	28437668	Jung J	2017-04-14	Psychiatry Res	Genome-wide association study of treatment response to venlafaxine XR in generalized anxiety disorder.	Venlafaxine response in generalised anxiety disorder (responders vs non-responders after 12 weeks)	98 European ancestry cases and controls	NA	6q12	intergenic	rs76778048-A	0.25	8E-6	(CGI)	10.2		Illumina [266820] (imputed)	N
1111	chr6	68957547	68957548	rs186005582	30566020	Fukaya E	2018-12-01	Circulation	Clinical and Genetic Determinants of Varicose Veins.	Varicose veins	9,577 British ancestry cases, 327,959 British ancestry controls	NA	6q12	NR	rs186005582-T	2.9E-4	4E-8		1.341	[0.86-1.82] unit increase	Affymetrix [10972371] (imputed)	N
1111	chr6	68984929	68984930	rs10455657	22823124	Verweij KJ	2012-07-24	Addict Biol	The genetic aetiology of cannabis use initiation: a meta-analysis of genome-wide association studies and a SNP-based heritability estimation.	Cannabis use (initiation)	10,091 individuals from 4,622 families	NA	6q12	RP11-406O16.1	rs10455657-T	0.81	6E-6		0.032	unit decrease	Illumina [~ 2400000] (imputed)	N
1111	chr6	69019722	69019723	rs12193070	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	6q12	NR	rs12193070-A	NR	7E-6		1.06	[NR]	Illumina [7158791] (imputed)	N
1112	chr6	69110614	69110615	rs80134609	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota (beta diversity)	858 Metropolitan French ancestry individuals	NA	6q12	NR	rs80134609-G	0.03	5E-7	(Unifrac metric)	4.909559	NR z-score increase	Illumina [5293637] (imputed)	N
1112	chr6	69142007	69142008	rs9363918	22158540	Wu C	2011-12-11	Nat Genet	Genome-wide association study identifies five loci associated with susceptibility to pancreatic cancer in Chinese populations.	Pancreatic cancer	981 Han Chinese ancestry cases, 1,991 Han Chinese ancestry controls	2,603 Han Chinese ancestry cases, 2,877 Han Chinese ancestry controls	6q12	BAI3	rs9363918-A	NR	1E-6		1.27	[1.15-1.39]	Affymetrix [666141]	N
1113	chr6	69224274	69224275	rs115663989	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	6q12	NR	rs115663989-?	NR	8E-6		0.031227	[0.018-0.045] unit increase	Affymetrix [805426] (imputed)	N
1114	chr6	69337786	69337787	rs2585617	21829377	Lemaitre RN	2011-07-28	PLoS Genet	Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Plasma omega-3 polyunsaturated fatty acid level (eicosapentaenoic acid)	8,866 European ancestry individuals	NA	6q12	BAI3	rs2585617-A	NR	6E-7		0.03	[NR] % decrease	Affymetrix, Illumina [NR]	N
1114	chr6	69397596	69397597	rs2802684	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	6q12	NR	rs2802684-?	NR	4E-7				Affymetrix [NR]	N
1115	chr6	69470406	69470407	rs6931354	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	6q12	NR	rs6931354-A	0.263	4E-12		0.0085142	[0.0061-0.0109] unit increase	NR [9732723] (imputed)	N
1115	chr6	69470708	69470709	rs10945141	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	6q12	NR	rs10945141-A	0.263	4E-10		0.018141711	[0.012-0.024] unit increase	NR [~ 10000000] (imputed)	N
1115	chr6	69521977	69521978	rs582962	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal cancer	978 Austrian ancestry colorectal cancer cases, 636 Austrian ancestry advanced colorectal adenoma cases, 4,294 European ancestry controls	NA	6q12	Intergenic	rs582962-?		8E-6		1.236	[NR]	Affymetrix [492217] (imputed)	N
1115	chr6	69525364	69525365	rs9360362	30319691	Liu C	2018-09-24	Front Genet	Genome-Wide Association and Mechanistic Studies Indicate That Immune Response Contributes to Alzheimer's Disease Development.	Cognitive impairment test score	235 early mild cognitive impairment cases, 249 late mild cognitive impairment cases, 47 Alzheimer's disease cases, 281 controls.	NA	6q12	Intergenic	rs9360362-?		3E-6		2.200634	[NR] unit decrease	Illumina [575353]	N
1115	chr6	69530386	69530387	rs502221	34130359	Curtis SW	2021-06-15	Genet Epidemiol	FAT4 identified as a potential modifier of orofacial cleft laterality.	Left unilateral cleft lip and palate	98 Asian ancestry cases, 199 European ancestry cases, 340 Hispanic cases, 1 case, 1,626 controls	NA	6q12	NR	rs502221-?		3E-6		1.69	[1.35-2.12]	Illumina [539473] (imputed)	N
1115	chr6	69551837	69551838	rs1589733	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Superior parietal cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	6q12	BAI3	rs1589733-?		7E-6				Illumina [4322238] (imputed)	N
1115	chr6	69552270	69552271	rs9446060	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6q12		rs9446060-A	0.5566	4E-8		0.0077	[0.005-0.0104] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1115	chr6	69552270	69552271	rs9446060	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6q12	Intergenic	rs9446060-A	0.5566	3E-9	(MTAG)	0.0078	[0.0053-0.0103] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1115	chr6	69558697	69558698	rs513357	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	6q12	NR	rs513357-A	NR	8E-9		0.015	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
1116	chr6	69652632	69652633	rs2184725	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip	15 Asian ancestry cases, 13 European ancestry cases, 15 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	6q12	NR	rs2184725-?	NR	2E-6		2.33	[1.87-2.9]	Illumina [539000] (imputed)	N
1116	chr6	69678212	69678213	rs3798978	34075027	Gonda X	2021-06-01	Transl Psychiatry	Genetic underpinnings of affective temperaments: a pilot GWAS investigation identifies a new genome-wide significant SNP for anxious temperament in ADGRB3 gene.	Anxious temperament	775 European ancestry individuals	NA	6q12		rs3798978-G	NR	4E-8		0.08709	unit increase	Illumina [2550710] (imputed)	N
1117	chr6	69761993	69761994	rs72910629	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		6q12	BAI3	rs72910629-A	0.864006	4E-11		0.0132548	[0.0093-0.0172] unit decrease	Affymetrix [12370749]	N
1117	chr6	69761993	69761994	rs72910629	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6q12	NR	rs72910629-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
1117	chr6	69803461	69803462	rs6913677	32363570	Giri AK	2020-05-04	Mol Genet Genomics	Multifaceted genome-wide study identifies novel regulatory loci in SLC22A11 and ZNF45 for body mass index in Indians.	Body mass index	1,142 Indo-European Indian ancestry individuals	6,117 Indo-European Indian ancestry individuals	6q12	BAI3	rs6913677-G	0.57	1E-8		0.47	[0.31-0.63] unit increase	Illumina [537246]	N
1117	chr6	69806493	69806494	rs62406773	34075027	Gonda X	2021-06-01	Transl Psychiatry	Genetic underpinnings of affective temperaments: a pilot GWAS investigation identifies a new genome-wide significant SNP for anxious temperament in ADGRB3 gene.	Anxious temperament	775 European ancestry individuals	NA	6q12		rs62406773-T	NR	2E-6		0.0774	unit increase	Illumina [2550710] (imputed)	N
1117	chr6	69806493	69806494	rs62406773	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA	6q12	ADGRB3	rs62406773-?	NR	6E-11	(female)	1.81619	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1117	chr6	69831485	69831486	rs190107978	30718321	Sanchez-Roige S	2019-02-04	J Neurosci	Genome-wide association studies of impulsive personality traits (BIS-11 and UPPSP) and drug experimentation in up to 22,861 adult research participants identify loci in the CACNA1I and CADM2 genes.	Negative urgency	22,795 European ancestry individuals	NA	6q12	ADGRB3	rs190107978-T	0.0016	7E-7		0.689	[0.416-0.962] unit increase	Illumina [11434023] (imputed)	N
1118	chr6	69900841	69900842	rs117050940	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	6q12		rs117050940-A	NR	5E-8		0.0292	[0.019-0.04] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1119	chr6	70038146	70038147	rs1283468	33562295	Coltell O	2021-02-07	Nutrients	Circulating Adiponectin and Its Association with Metabolic Traits and Type 2 Diabetes: Gene-Diet Interactions Focusing on Selected Gene Variants and at the Genome-Wide Level in High-Cardiovascular Risk Mediterranean Subjects.	Adiponectin levels	504 European ancestry high cardiovascular risk non-diabetic elderly individuals	NA	6q13	ADGRB3	rs1283468-A	0.18	5E-7		0.2	[NR] unit increase	Illumina [625127]	N
1119	chr6	70074231	70074232	rs3757057	20339536	Barber MJ	2010-03-22	PLoS One	Genome-wide association of lipid-lowering response to statins in combined study populations.	Response to statin therapy	3,928 European ancestry individuals	NA	6q13	LMBRD1, COL19A1, BAI3	rs3757057-T	0.05	4E-6	(Triglyceride, sum)			Illumina [~ 2500000] (imputed)	N
1119	chr6	70079315	70079316	rs143397262	33106475	Li QS	2020-10-26	Transl Psychiatry	Genome-wide association studies of antidepressant class response and treatment-resistant depression.	Response to antidepressants (non-treatment-resistant vs treatment-resistant depression)	21,649 European ancestry individuals with non-treatment-resistant depression, 3,857 European ancestry individuals with treatment-resistant depression	NA	6q13	NR	rs143397262-G	NR	3E-7		1.9093	NR	Illumina [at least 560000] (imputed)	N
1119	chr6	70079320	70079321	rs181534489	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Non-oily fish consumption	335,576 European ancestry individuals	NA	6q13	BAI3	rs181534489-?	NR	3E-9		0.0391934	[0.026-0.052] unit increase	Affymetrix [25921788] (imputed)	N
1119	chr6	70120330	70120331	rs140485756	26284813	Hayes MG	2015-08-18	Nat Commun	Genome-wide association of polycystic ovary syndrome implicates alterations in gonadotropin secretion in European ancestry populations.	Follicle stimulating hormone levels in polycystic ovary syndrome	647 European ancestry cases	606 European ancestry cases	6q13	intergenic	rs140485756-C	0.03	2E-7		0.14	[0.081-0.199] log10(mIU/mL) increase	Illumina [at least 624044] (imputed)	N
1120	chr6	70146917	70146918	rs6916553	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	6q13	NA	rs6916553-A	0.2352	3E-9		0.0121	[0.0082-0.016] unit decrease	NR [~ 27400000] (imputed)	N
1120	chr6	70162204	70162205	rs62408297	33539483	Li Z	2021-02-04	PLoS One	Bivariate genome-wide association study (GWAS) of body mass index and blood pressure phenotypes in northern Chinese twins.	Body mass index and systolic blood pressure (bivariate analysis)	274 Chinese ancestry dizygotic twins	NA	6q13	ADGRB3	rs62408297-?	NR	2E-6				Illumina [7401356] (imputed)	N
1120	chr6	70182709	70182710	rs78536982	24886709	Ko A	2014-06-02	Nat Commun	Amerindian-specific regions under positive selection harbour new lipid variants in Latinos.	Triglycerides	1,678 Mexican ancestry high triglyceride cases, 1,645 Mexican ancestry low triglyceride controls	2,129 Mexican ancestry high triglyceride cases, 2,985 Mexican ancestry low triglyceride controls, 903 Mexican ancestry individuals from 73 dyslipidemic families	6q13	BAI3 LMBRD1	rs78536982-T	NR	7E-9		1.38	[1.18-1.61]	Illumina [1661241] (imputed)	N
1121	chr6	70326402	70326403	rs10455695	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6q13	NR	rs10455695-?	NR	6E-10				Affymetrix [~ 8270000] (imputed)	N
1121	chr6	70357367	70357368	rs7761673	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	6q13		rs7761673-?	NR	5E-11				NR [~ 8900000] (imputed)	N
1121	chr6	70382869	70382870	rs6929584	26031901	Dahlin A	2015-06-02	Pharmacogenomics J	Genome-wide association study of leukotriene modifier response in asthma.	Response to zileuton treatment in asthma (FEV1 change interaction)	160 European and other ancestry zileuton-treated cases, 144 European and other ancestry placebo-controlled cases	149 European and other ancestry zileuton-treated cases, 73 European and other ancestry placebo-controlled cases	6q13	intergenic	rs6929584-?	NR	5E-6	(Dominant model)	0.66	unit increase	Illumina [542562]	N
1122	chr6	70490510	70490511	rs9346353	25469926	Gottlieb DJ	2014-12-02	Mol Psychiatry	Novel loci associated with usual sleep duration: the CHARGE Consortium Genome-Wide Association Study.	Sleep duration	47,180 European ancestry individuals	4,771 African American individuals	6q13	LMBRD1	rs9346353-?	NR	3E-6	(EA)	2.03	[1.19-2.87] unit decrease	Affymetrix, Illumina [2033301]	N
1123	chr6	70538917	70538918	rs78276535	32766472	Park SL	2020-06-25	Hepatol Commun	Genome-Wide Association Study of Liver Fat: The Multiethnic Cohort Adiposity Phenotype Study.	Nonalcoholic fatty liver disease	37 African American cases, 177 Japanese American cases, 140 Latino cases, 85 Native Hawaiian cases, 67 European ancestry cases, 218 African American controls, 221 Japanese American controls, 182 Latino controls, 158 Native Hawaiian controls, 244 European ancestry controls	NA	6q13	NR	rs78276535-?	NR	9E-7		3.89	[2.26-6.68]	Illumina [9789995] (imputed)	N
1123	chr6	70539252	70539253	rs77249491	32766472	Park SL	2020-06-25	Hepatol Commun	Genome-Wide Association Study of Liver Fat: The Multiethnic Cohort Adiposity Phenotype Study.	Percent liver fat	269 African American individuals, 424 Japanese American individuals, 345 Latino individuals, 270 Native Hawaiian individuals, 382 European ancestry individuals	NA	6q13	NR	rs77249491-?	NR	3E-9		0.1980402	[0.13-0.26] unit increase	Illumina [9789995] (imputed)	N
1123	chr6	70539252	70539253	rs77249491	32766472	Park SL	2020-06-25	Hepatol Commun	Genome-Wide Association Study of Liver Fat: The Multiethnic Cohort Adiposity Phenotype Study.	Nonalcoholic fatty liver disease	37 African American cases, 177 Japanese American cases, 140 Latino cases, 85 Native Hawaiian cases, 67 European ancestry cases, 218 African American controls, 221 Japanese American controls, 182 Latino controls, 158 Native Hawaiian controls, 244 European ancestry controls	NA	6q13	NR	rs77249491-?	NR	7E-7		4.0	[2.31-6.93]	Illumina [9789995] (imputed)	N
1123	chr6	70579610	70579611	rs34791579	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on educational attainment (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	6q13		rs34791579-?	NR	3E-8				NR [NR]	N
1123	chr6	70583952	70583953	rs62420119	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on Townsend deprivation index (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	6q13		rs62420119-?	NR	4E-8				NR [NR]	N
1123	chr6	70586331	70586332	rs10498870	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Subjective well-being (MTAG)	388,538 European ancestry individuals	NA	6q13	NR	rs10498870-G	0.701	4E-8		0.011	[0.0071-0.0149] unit decrease	Illumina [NR] (imputed)	N
1123	chr6	70589629	70589630	rs6919210	30289880	Qi G	2018-10-05	PLoS Genet	Heritability informed power optimization (HIPO) leads to enhanced detection of genetic associations across multiple traits.	Social science traits (pleiotropy) (HIPO component 1)	up to 630,791 European ancestry individuals	NA	6q13	COL19A1	rs6919210-?	NR	2E-9				NR [2100000]	N
1123	chr6	70589629	70589630	rs6919210	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Subjective well-being	298,420 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	6q13	NR	rs6919210-C	0.1882	9E-6		0.0147	[0.0082-0.0212] unit increase	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
1123	chr6	70593802	70593803	rs13200171	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Neuroticism	170,911 European ancestry individuals	NA	6q13	NR	rs13200171-T	0.174	4E-6		0.02087013	[0.012-0.03] unit decrease	Affymetrix [up to 6544775] (imputed)	N
1124	chr6	70741208	70741209	rs3793039	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6q13	NR	rs3793039-G	0.25306153873553	2E-6	(IGP22)	0.2388	[0.14-0.34] unit increase	Illumina [~ 2500000] (imputed)	N
1124	chr6	70772037	70772038	rs571324947	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body fat mass	3,399 whole genome sequenced individuals, 11,802 European ancestry individuals	10,670 European ancestry individuals	6q13	COL19A1	rs571324947-T	0.9905	7E-6		0.2891	[0.16-0.42] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1125	chr6	70816927	70816928	rs3793055	32558222	Okamura K	2020-06-18	Pigment Cell Melanoma Res	Genome-wide association study identifies CDH13 as a susceptibility gene for rhododendrol-induced leukoderma.	Leukoderma in response to rhododendrol	147 Japanese ancestry cases, 112 Japanese ancestry controls	NA	6q13	COL19A1	rs3793055-?	NR	2E-6		3.7	[2.1-6.5]	Illumina [1057565]	N
1125	chr6	70837175	70837176	rs180942669	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	6q13	COL19A1	rs180942669-A	0.998	7E-6		1.282	[0.72-1.84] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1125	chr6	70858817	70858818	rs5877241	32009195	Condreay LD	2020-02-03	Rheumatol Int	Pharmacogenetic investigation of efficacy response to mepolizumab in eosinophilic granulomatosis with polyangiitis.	Average oral glucocorticoid dose in mepolizumab-treated eosinophilic granulomatosis with polyangiitis	61 individuals	NA	6q13	NR	rs5877241-?	NR	2E-6		0.8202	[0.51-1.13] unit increase	Affymetrix [7154205] (imputed)	N
1125	chr6	70860818	70860819	rs76909323	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6q13	NR	rs76909323-G	0.02265	5E-9	(HSPA6)	0.02131	NR unit increase	Illumina [1671387] (imputed)	N
1125	chr6	70909072	70909073	rs658805	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-18 levels	3,636 Finnish ancestry individuals	NA	6q13	NR	rs658805-G		5E-7		0.1226	[0.075-0.17] SD units decrease	NR [10700000] (imputed)	N
1128	chr6	71183677	71183678	rs62420332	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		FAM135A	rs62420332-?	NR	3E-9		1.87114	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1128	chr6	71233311	71233312	rs143708125	34154395	Brikell I	2021-06-22	Am J Psychiatry	Genetic, Clinical, and Sociodemographic Factors Associated With Stimulant Treatment Outcomes in ADHD.	Switch to non-stimulant treatment in ADHD	1,137 European ancestry cases, 3,854 European ancestry controls	NA	6q13		rs143708125-T	0.019	9E-6		0.131	[0.074-0.188] unit increase	Illumina [6361597] (imputed)	N
1128	chr6	71289188	71289189	rs1048886	21490949	Sim X	2011-04-07	PLoS Genet	Transferability of type 2 diabetes implicated loci in multi-ethnic cohorts from Southeast Asia.	Type 2 diabetes	2,010 Chinese ancestry cases, 1,945 Chinese ancestry controls, 794 Malay ancestry cases, 1,240 Malay ancestry controls, 977 Asian Indian ancestry cases, 1,169 Asian Indian ancestry controls	NA	6q13	C6orf57	rs1048886-G	0.18	3E-8	(Indian)	1.54	[1.32-1.80]	Illumina [~ 2000000] (imputed)	N
1129	chr6	71326033	71326034	rs2691475	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	6q13		rs2691475-A	0.365629	4E-18		0.020458797	[0.016-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1129	chr6	71326033	71326034	rs2691475	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q13	NR	rs2691475-G	0.635853	3E-19				Affymetrix, Illumina [17210439] (imputed)	N
1129	chr6	71326033	71326034	rs2691475	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	6q13	NR	rs2691475-G	0.633452	7E-22		0.0194	[0.015-0.023] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
1129	chr6	71346965	71346966	rs2494979	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	6q13	intergenic	rs2494979-G	0.3025	2E-10		0.02491286	[0.017-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
1129	chr6	71347061	71347062	rs2462506	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	6q13		rs2462506-A	0.284651	8E-23		0.024641545	[0.02-0.03] unit increase	Affymetrix [93095623] (imputed)	N
1130	chr6	71529031	71529032	rs61400090	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6q13	SMAP1	rs61400090-G	0.528	9E-14	(Stromal membrane-associated protein 1, SMAP1.11649.3.3)	0.18	[0.14-0.22] unit increase	Affymetrix [10572788] (imputed)	N
1131	chr6	71623252	71623253	rs1304029	28011674	Ruhle F	2016-12-23	Blood	Rare genetic variants in SMAP1, B3GAT2, and RIMS1 contribute to pediatric venous thromboembolism.	Venous thromboembolism	212 European ancestry trios	NA	6q13	B3GAT2	rs1304029-?	NR	1E-6		2.06	[1.53-2.79]	Illumina [529944]	N
1131	chr6	71629215	71629216	rs146184981	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Monokine induced by gamma interferon levels	3,685 Finnish ancestry individuals	NA	6q13	NR	rs146184981-C	NR	8E-6		0.743	[0.41-1.08] SD units decrease	NR [10700000] (imputed)	N
1131	chr6	71642643	71642644	rs76014470	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		B3GAT2	rs76014470-?	NR	4E-8		3.29653	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1131	chr6	71660110	71660111	rs6922893	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6q13	B3GAT2	rs6922893-A	0.219	7E-6	(ALT/AST)	0.03	[NR] unit increase	Illumina [899892]	N
1132	chr6	71707972	71707973	rs9354951	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Daytime sleep phenotypes	874 European ancestry individuals	NA	6q13	B3GAT2, SMAP1, LYPLA1P3	rs9354951-A	NR	4E-6	(daytime napping duration, weekdays)	0.07869	[0.045-0.112] unit decrease	Affymetrix [7141204] (imputed)	N
1132	chr6	71726538	71726539	rs1158058	23319000	Luykx JJ	2013-01-15	Mol Psychiatry	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (MHPG)	up to 398 European ancestry individuals	NA	6q13	intergenic	rs1158058-T		5E-6		0.2918	unit increase	Illumina [5767231] (imputed)	N
1132	chr6	71776970	71776971	rs11968814	21326311	Bhatnagar P	2011-02-17	J Hum Genet	Genome-wide association study identifies genetic variants influencing F-cell levels in sickle-cell patients.	F-cell distribution in sickle cell anaemia	440 African American individuals	NA	6q13	B3GAT2	rs11968814-A	0.16	9E-7		1.17	[0.70-1.64] unit decrease	Illumina [660740]	N
1132	chr6	71791673	71791674	rs192376036	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Monokine induced by gamma interferon levels	3,685 Finnish ancestry individuals	NA	6q13	NR	rs192376036-C	NR	8E-6		0.7708	[0.42-1.12] SD units increase	NR [10700000] (imputed)	N
1132	chr6	71820674	71820675	rs73746987	28701861	Randall CL	2017-06-15	Pain Res Manag	A Preliminary Genome-Wide Association Study of Pain-Related Fear: Implications for Orofacial Pain.	Fear of minor pain	Up to 1,367 European ancestry individuals, up to 159 African American individuals, up to 13 Hispanic individuals, up to 23 Asian, Native American and other ancestry individuals, up to 21 individuals	NA	6q13	NR	rs73746987-T	0.01	2E-7		3.4	unit decrease	Illumina [8591557] (imputed)	N
1133	chr6	71862370	71862371	rs13213483	26112879	Rudkowska I	2015-06-20	J Nutrigenet Nutrigenomics	Interaction between Common Genetic Variants and Total Fat Intake on Low-Density Lipoprotein Peak Particle Diameter: A Genome-Wide Association Study.	LDL peak particle diameter (total fat intake interaction)	541 European ancestry individuals	NA	6q13	intergenic	rs13213483-A	0.940815741	7E-6		0.07009798	[0.040-0.101] unit decrease	Illumina [1632371] (imputed)	N
1134	chr6	71991815	71991816	rs9346455	26323598	Brandl EJ	2015-09-01	Pharmacogenomics J	Genome-wide association study on antipsychotic-induced weight gain in the CATIE sample.	Antipsychotic drug-induced weight gain (time interaction)	189 European ancestry treated schizophrenia cases	NA	6q13	OGFRL1	rs9346455-G	0.087	6E-6		0.013	[NR] unit increase	Illumina, Perlegen [321290]	N
1134	chr6	71991815	71991816	rs9346455	26323598	Brandl EJ	2015-09-01	Pharmacogenomics J	Genome-wide association study on antipsychotic-induced weight gain in the CATIE sample.	Antipsychotic drug-induced weight gain	189 European ancestry treated schizophrenia cases	86 European ancestry treated schizophrenia or schizoaffective cases	6q13	OGFRL1	rs9346455-G	0.087	1E-7				Illumina, Perlegen [321290]	N
1134	chr6	71993273	71993274	rs117492514	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		AL589935.1	rs117492514-?	NR	3E-8		3.33589	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1135	chr6	72139571	72139572	rs1727638	20932310	Han MR	2010-10-08	BMC Neurol	Genome-wide association reveals genetic effects on human A?42 and ? protein levels in cerebrospinal fluids: a case control study.	Cerebrospinal fluid AB1-42 levels	172 European ancestry Alzheimer's disease cases, 109 European ancestry mild cognitive impairment cases, 109 European ancestry controls	NA	6q13	intergenic	rs1727638-A	NR	1E-6	(Controls)			Illumina [498205]	N
1135	chr6	72158125	72158126	rs117497853	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	6q13	LINC01626	rs117497853-A	0.025549762	5E-6		1.1929358	[1.105765669-1.286977703]	Illumina [10439017] (imputed)	N
1135	chr6	72159890	72159891	rs852940	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	6q13		rs852940-?	NR	9E-9				NR [~ 8900000] (imputed)	N
1135	chr6	72179307	72179308	rs701699	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	6q13		rs701699-G	NR	1E-11		0.0117	[0.0084-0.015] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1135	chr6	72181114	72181115	rs852928	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6q13		rs852928-?	NR	3E-17				NR [~ 8900000] (imputed)	N
1135	chr6	72193706	72193707	rs9351814	24262325	Dichgans M	2013-11-21	Stroke	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Coronary artery disease or ischemic stroke	12,389 Ischemic stroke cases, 22,233 Coronary artery disease cases, ~ 88,766 controls	NA	6q13	C6orf155	rs9351814-?		5E-8				Affymetrix, Illumina [up to 2500000] (imputed)	N
1135	chr6	72196291	72196292	rs113880644	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	6q13	LINC01626	rs113880644-C	0.931696	2E-10		0.022848	[0.016-0.03] unit increase	NR [13737936] (imputed)	N
1135	chr6	72205131	72205132	rs12195791	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta minimum area	35,110 individuals	NA	6q13		rs12195791-G	0.751158	1E-8		0.0471231	[0.031-0.063] increase	Affymetrix [NR]	N
1135	chr6	72206619	72206620	rs504691	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	6q13		rs504691-A	NR	8E-10		0.0123	[0.0084-0.0162] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1135	chr6	72206619	72206620	rs504691	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	NA	6q13	OGFRL1	rs504691-C	0.5998	3E-11		0.1177	[0.083-0.152] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1135	chr6	72220593	72220594	rs12190899	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6q13	NR	rs12190899-G	0.01394	2E-8	(OAT)	0.05879	NR unit increase	Illumina [1671387] (imputed)	N
1137	chr6	72384540	72384541	rs117534741	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Squamous cell lung carcinoma	7,426 European ancestry cases, 55,627 European ancestry controls	NA	6q13	LINC01626, RIMS1	rs117534741-A	0.024812467	6E-7		1.4064276	[1.230153554-1.607960747]	Illumina [10439017] (imputed)	N
1137	chr6	72384540	72384541	rs117534741	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	6q13	LINC01626, RIMS1	rs117534741-A	0.024212689	5E-7		1.2351797	[1.137762259-1.340938091]	Illumina [10439017] (imputed)	N
1137	chr6	72406318	72406319	rs4707930	20014019	Dubinsky MC	2010-08-01	Inflamm Bowel Dis	Genome wide association (GWA) predictors of anti-TNFalpha therapeutic responsiveness in pediatric inflammatory bowel disease.	Response to anti-TNF alpha therapy in inflammatory bowel disease	94 pediatric cases	NA	6q13	intergenic	rs4707930-?	NR	6E-6		6.603	[NR]	Illumina [301742]	N
1137	chr6	72450434	72450435	rs1410669	31371054	Ruddy KJ	2019-07-29	Fertil Steril	Genetic predictors of chemotherapy-related amenorrhea in women with breast cancer.	Adverse response to chemotherapy (amenorrhea) in breast cancer	457 European ancestry amenorrheic cases, 711 European ancestry post-chemotherapy menses cases	NA	6q13	RIMS1	rs1410669-G	0.07	5E-7		1.71	[NR]	Illumina [5430816] (imputed)	N
1137	chr6	72479262	72479263	rs2881955	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	6q13		rs2881955-T	0.2777	6E-11		0.016	[0.012-0.02] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
1137	chr6	72479262	72479263	rs2881955	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	6q13	OGFRL1, RIMS1	rs2881955-T	0.2788	5E-11		1.0274706		Affymetrix [11880941] (imputed)	N
1137	chr6	72482457	72482458	rs10455248	20125193	Cirulli ET	2010-02-03	Eur J Hum Genet	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American individuals, up to 74 South Asian ancestry individuals	NA	6q13	RIMS1	rs10455248-?	NR	4E-6	(TrailsA)			Illumina [up to 563855]	N
1138	chr6	72487761	72487762	rs12528068	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	6q13	RIMS1	rs12528068-T	0.2844	2E-10		0.0657	[0.046-0.086] unit increase	NR [7784415] (imputed)	N
1138	chr6	72522320	72522321	rs138191773	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	6q13	RIMS1	rs138191773-G	0.982978	2E-9		0.047771	[0.032-0.063] unit increase	Affymetrix [NR] (imputed)	N
1138	chr6	72581210	72581211	rs74875148	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	6q13	intergenic	rs74875148-C	NR	2E-6	(AA)			Illumina [up to 11995908] (imputed)	N
1138	chr6	72581210	72581211	rs74875148	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	6q13	intergenic	rs74875148-C	NR	2E-6				Illumina [up to 11995908] (imputed)	N
1139	chr6	72616434	72616435	rs1832987	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	6q13	NR	rs1832987-?	NR	6E-6	(AA)	47.27	[44.02-50.52]	Illumina [905956]	N
1139	chr6	72648943	72648944	rs117413473	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in never smokers	2,355 European ancestry cases,  7,504 European ancestry controls	NA	6q13	RIMS1	rs117413473-G	0.018592851	9E-6		1.847798	[1.408824891-2.423549958]	Illumina [10439017] (imputed)	N
1139	chr6	72674859	72674860	rs531467446	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	6q13	NR	rs531467446-?	NR	5E-6		0.0079799	[0.0045-0.0114] unit decrease	Affymetrix [805426] (imputed)	N
1140	chr6	72793416	72793417	rs9360524	34620984	Skuladottir AT	2021-10-07	Commun Biol	A genome-wide meta-analysis uncovers six sequence variants conferring risk of vertigo.	Vertigo	48,072 European ancestry cases, 894,541 European ancestry controls	NA	6q13		rs9360524-G	NR	9E-6		0.96696		Affymetrix, Illumina [62056310] (imputed)	N
1140	chr6	72864903	72864904	rs2463709	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	6q13	RIMS1	rs2463709-T	0.428	2E-7		1.06279	[1.04-1.09]	NR [9372253] (imputed)	N
1141	chr6	72886011	72886012	rs9442750	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6q13		rs9442750-A	0.7439	3E-8		0.0089	[0.0058-0.012] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1141	chr6	72894587	72894588	rs112950507	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Meniere's disease	1,526 European ancestry cases, 481,248 European ancestry controls, 1,290 East Asian ancestry cases, 177,436 East Asian ancestry controls	NA	6q13		rs112950507-T	NR	2E-8		2.0149	[1.31-2.72] unit increase	Affymetrix, Illumina [25844443] (imputed)	N
1141	chr6	72906752	72906753	rs2249625	24236485	Cornejo-Garcia JA	2013-11-01	Pharmacogenomics	Genome-wide association study in NSAID-induced acute urticaria/angioedema in Spanish and Han Chinese populations.	Acute urticaria and angioedema (non-steroidal anti-inflammatory drug-induced)	112 European ancestry cases, 124 European ancestry controls, 120 Han Chinese ancestry cases, 101 Han Chinese ancestry controls	NA	6q13	RIMS1	rs2249625-C	0.3821	5E-6	(EA)	2.24	[1.55-3.24]	Affymetrix [up to 644046]	N
1141	chr6	72963139	72963140	rs118038155	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	6q13	NR	rs118038155-?	NR	6E-6		0.0078176	[0.0044-0.0112] unit decrease	Affymetrix [805426] (imputed)	N
1141	chr6	72966595	72966596	rs75237141	31164008	Mullins N	2019-06-05	Am J Psychiatry	GWAS of Suicide Attempt in Psychiatric Disorders and Association With Major Depression Polygenic Risk Scores.	Suicide attempts in bipolar disorder or schizophrenia	3,264 European ancestry attempters with bipolar disorder, 5,500 European ancestry nonattempters with bipolar disorder, 1,683 European ancestry attempters with schizophrenia, 2,946 European ancestry nonattempters with schizophrenia	NA	6q13	NR	rs75237141-G	0.07999999999999996	6E-6		1.25	[1.14-1.37]	NR [at least 8807005] (imputed)	N
1142	chr6	73090536	73090537	rs2807510	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	6q13	NR	rs2807510-?	NR	3E-13				Affymetrix [NR]	N
1142	chr6	73132744	73132745	rs9360557	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	6q13	RIMS1	rs9360557-?		3E-9				NR [6786993] (imputed)	N
1143	chr6	73142402	73142403	rs75608892	33824429	Fjukstad KK	2021-04-06	Pharmacogenomics J	Genetic variants associated with cardiometabolic abnormalities during treatment with selective serotonin reuptake inhibitors: a genome-wide association study.	Total cholesterol levels x SSRI levels (escitalopram or citalopram) interaction in schizophrenia or bipolar disorder	181 European ancestry individuals	NA	6q13	RIMS1	rs75608892-C	NR	8E-6		20.9468	[12.07-29.82] unit decrease	Illumina [NR] (imputed)	N
1143	chr6	73142402	73142403	rs75608892	33824429	Fjukstad KK	2021-04-06	Pharmacogenomics J	Genetic variants associated with cardiometabolic abnormalities during treatment with selective serotonin reuptake inhibitors: a genome-wide association study.	LDL levels x SSRI levels (escitalopram or citalopram) interaction in schizophrenia or bipolar disorder	181 European ancestry individuals	NA	6q13	RIMS1	rs75608892-C	NR	8E-6		19.0116	[10.97-27.06] unit decrease	Illumina [NR] (imputed)	N
1143	chr6	73155174	73155175	rs2492965	31260374	Pedergnana V	2019-07-01	J Interferon Cytokine Res	Impact of IFNL4 Genetic Variants on Sustained Virologic Response and Viremia in Hepatitis C Virus Genotype 3 Patients.	Response to interferon treatment in hepatitis C virus genotype 3	717 European, Asian and unknown ancestry responders, 541 European, Asian and unknown ancestry non-responders	NA	6q13	NR	rs2492965-?	NR	1E-6		2.857143	NR	Affymetrix [~ 18000000] (imputed)	N
1143	chr6	73155288	73155289	rs2789605	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Schizophrenia (MTAG)	940,613 European ancestry individuals	NA			rs2789605-?	NR	9E-9				NR [2625067]	N
1143	chr6	73155700	73155701	rs1339227	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Schizophrenia (MTAG)	at least 33,640 European ancestry cases, at least 43,456 European ancestry controls	NA	6q13	NR	rs1339227-T	0.3419	2E-8		0.06429455	[0.042-0.087] unit decrease	NR [NR]	N
1143	chr6	73155700	73155701	rs1339227	31268507	Periyasamy S	2019-07-03	JAMA Psychiatry	Association of Schizophrenia Risk With Disordered Niacin Metabolism in an Indian Genome-wide Association Study.	Schizophrenia	816 Indian ancestry cases, 900 Indian ancestry controls, 505 Indian ancestry cases and 871 Indian ancestry controls from 405 families, up to 36,989 European and unknown ancestry cases, up to 113,075 European and unknown ancestry controls	NA	6q13	NR	rs1339227-?	NR	1E-7				Illumina [up to 5582932] (imputed)	N
1143	chr6	73155700	73155701	rs1339227	29483656	Pardinas AF	2018-02-26	Nat Genet	Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.	Schizophrenia	40,675 European ancestry cases, 64,643 European ancestry controls	1,651 European ancestry cases, 4,111 cases, 142,717 European ancestry controls, 11,507 controls	6q13	RIMS1	rs1339227-?	NR	4E-10		1.065	[1.05-1.08]	Illumina [8000000] (imputed)	N
1143	chr6	73155700	73155701	rs1339227	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6q13	RIMS1	rs1339227-?		3E-8		1.0638298	[1.04-1.08]	Affymetrix, Illumina [NR]	N
1143	chr6	73155700	73155701	rs1339227	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	6q13	NR	rs1339227-C	NR	2E-7		1.0638298	[NR]	Illumina [7158791] (imputed)	N
1143	chr6	73155700	73155701	rs1339227	25056061	Ripke S	2014-07-22	Nature	Biological insights from 108 schizophrenia-associated genetic loci.	Schizophrenia	32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	1,513 European ancestry cases, 66,236 European ancestry controls	6q13	RIMS1	rs1339227-C	0.632	3E-8		1.0615711	[1.04-1.08]	Affymetrix, Illumina [9005918] (imputed)	N
1143	chr6	73164143	73164144	rs34321714	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	6q13	RIMS1	rs34321714-G	NR	1E-7	(EA)	1.0592098	[1.04-1.08]	Illumina [6627481] (imputed)	N
1143	chr6	73164143	73164144	rs34321714	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	6q13	RIMS1	rs34321714-G	NR	1E-7		1.0526316	[1.03-1.07]	Illumina [6627481] (imputed)	N
1143	chr6	73164143	73164144	rs34321714	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	6q13	intergenic	rs34321714-G	NR	3E-7		1.0504202	[1.03-1.07]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1143	chr6	73174667	73174668	rs11758316	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	6q13	RIMS1, KCNQ5	rs11758316-G	NR	6E-6		0.109796	[0.062-0.157] unit increase	Illumina [at least 950000] (imputed)	N
1143	chr6	73193150	73193151	rs1334346	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking status (current vs never)	40,456 European ancestry current smokers, 13,511 African American current smokers, 2,920 Hispanic current smokers, 59,056 European ancestry mostly never smokers, 17,751 African American mostly never smokers, 7,195 Hispanic mostly never smokers	NA	6q13		rs1334346-A	NR	8E-9	(Hispanic)	0.83	NR	Affymetrix [~ 79000000] (imputed)	N
1143	chr6	73193150	73193151	rs1334346	24009623	Jiang J	2013-08-30	Front Genet	Genome-wide association study for biomarker identification of Rapamycin and Everolimus using a lymphoblastoid cell line system.	Response to mTOR inhibitor (rapamycin)	87 European ancestry individuals, 91 African American individuals, 94 Han Chinese ancestry individuals	NA	6q13	RIMS1	rs1334346-?	NR	8E-6		0.28	[NR] unit decrease	Affymetrix, Illumina [1348798]	N
1143	chr6	73193769	73193770	rs118123545	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	6q13	NR	rs118123545-?	NR	5E-8				Illumina [7760689] (imputed)	N
1143	chr6	73193956	73193960	rs763268488	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-hip ratio	1,254 whole genome sequenced European ancestry individuals, 3,071 whole genome sequenced individuals, 29,723 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,053 Mylopotamos (founder/genetic isolate) individuals, 879 Pomak (founder/genetic isolate) individuals	206,053 European ancestry individuals	6q13	RP11-135M8__A.1	rs763268488-CACTT	0.9951	1E-6		1.2698	[0.76-1.78] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1145	chr6	73470075	73470076	rs34586757	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	6q13		rs34586757-A	NR	4E-8		0.0164	[0.011-0.022] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1145	chr6	73470075	73470076	rs34586757	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	6q13		rs34586757-A	NR	8E-13		0.0203	[0.015-0.026] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
1145	chr6	73492027	73492028	rs4421163	30172743	Liang X	2018-08-30	Bone	Assessing the genetic correlations between early growth parameters and bone mineral density: A polygenic risk score analysis.	Total body bone mineral density	2,286 European ancestry individuals	NA	6q13	KCNQ5	rs4421163-?	NR	6E-6				Affymetrix [753382]	N
1145	chr6	73514622	73514623	rs117007884	29748315	Pott J	2018-05-01	Circ Genom Precis Med	Genetic Regulation of PCSK9 (Proprotein Convertase Subtilisin/Kexin Type 9) Plasma Levels and Its Impact on Atherosclerotic Vascular Disease Phenotypes.	Plasma proprotein convertase subtilisin/kexin type 9 levels in stable coronary artery disease	2,022 European ancestry individuals without statin treatment, 1,268 European ancestry individuals with statin treatment	NR	6q13	KCNQ5, KCNQ5-AS2	rs117007884-G	0.023	2E-7	(statin-free)	0.151	[NR] unit decrease	Affymetrix [9882017] (imputed)	N
1146	chr6	73573504	73573505	rs2796003	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	6q13		rs2796003-?	NR	9E-9				NR [~ 8900000] (imputed)	N
1146	chr6	73577686	73577687	rs2350090	32080354	Rasmussen ER	2020-02-21	Pharmacogenomics J	Genome-wide association study of angioedema induced by angiotensin-converting enzyme inhibitor and angiotensin receptor blocker treatment.	Angioedema in response to angiotensin-converting enzyme inhibitor and/or angiotensin receptor blocker	172 European ancestry cases, 1 case, 4,890 European ancestry controls	NA	6q13	NR	rs2350090-A	0.013	2E-6		3.818	[2.191-6.651]	Illumina [7585599] (imputed)	N
1146	chr6	73581050	73581051	rs9446777	25672891	Shimizu S	2015-02-11	J Dent Res	A genome-wide association study of periodontitis in a Japanese population.	Periodontitis	1,593 Japanese ancestry cases, 7,980 Japanese ancestry controls	1,167 Japanese ancestry cases, 7,178 Japanese ancestry controls	6q13	KCNQ5	rs9446777-G	0.86	5E-6		1.22	[1.14-1.35]	Illumina [597434]	N
1146	chr6	73587952	73587953	rs112348907	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6q13	NR	rs112348907-G	0.2959	2E-8		0.0073	[0.0048-0.0098] unit increase	NR [7666894] (imputed)	N
1146	chr6	73612548	73612549	rs6453610	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent	41,073 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	6q13	NR	rs6453610-A	0.4443	9E-14	(EA)	0.1099	[0.081-0.139] unit increase	Affymetrix, Illumina [~ 9300000] (imputed)	N
1146	chr6	73614940	73614941	rs7755521	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia	11,197 European ancestry low myopic cases, 21,416 European ancestry emmetropia controls	NA	6q13	NR	rs7755521-?	NR	6E-7		0.0841047	[0.051-0.117] unit decrease	NR [13958389] (imputed)	N
1146	chr6	73614940	73614941	rs7755521	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent	41,073 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	6q13	NR	rs7755521-A	0.5618	2E-16		0.1107	[0.084-0.137] unit decrease	Affymetrix, Illumina [~ 9300000] (imputed)	N
1146	chr6	73626638	73626639	rs951762	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	6q13	NR	rs951762-?	NR	4E-11		0.182609	[0.13-0.24] unit decrease	NR [13958389] (imputed)	N
1146	chr6	73629565	73629566	rs6929347	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	6q13	NR	rs6929347-?	NR	7E-23		0.202814	[0.16-0.24] unit decrease	NR [13958389] (imputed)	N
1146	chr6	73638261	73638262	rs4374796	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Hyperopia	10,828 European ancestry hyperopia cases, 21,416 European ancestry emmetropia controls	NA	6q13	NR	rs4374796-?	NR	2E-12		0.124516	[0.09-0.159] unit increase	NR [13958389] (imputed)	N
1146	chr6	73643288	73643289	rs7744813	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	28,092 non-Hispanic White ancestry cases, 50,487 non-Hispanic White ancestry controls, 31,852 European ancestry cases, 428,084 European ancestry controls	NA		NR	rs7744813-A	NR	2E-8		1.0405		Affymetrix [9869154] (imputed)	N
1146	chr6	73643288	73643289	rs7744813	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	28,092 non-Hispanic White ancestry cases, 50,487 non-Hispanic White ancestry controls, 2,233 East Asian ancestry cases, 7,023 East Asian ancestry controls, 2,149 Hispanic/Latino cases, 6,620 Hispanic/Latino controls, 815 African American cases, 2,368 African American controls, 31,852 European ancestry cases, 428,084 European ancestry controls, 757 African ancestry cases, 7,897 African ancestry controls, 1,278 South Asian ancestry cases, 8,571 South Asian ancestry controls, 668 other admixed cases, 7,349 other admixed controls	313,278 European ancestry cases, 2,210,509 European ancestry controls, 7,715 African American cases, 120,390 African American controls, 3,934 East Asian ancestry cases, 104,766 East Asian ancestry controls, 21,408 Latino cases, 425,544 Latino controls, 874 South Asian ancestry cases, 26,037 South Asian ancestry controls		KCNQ5	rs7744813-A	NR	4E-10		1.02	[1.01-1.03]	Affymetrix [9869154] (imputed)	N
1146	chr6	73643288	73643289	rs7744813	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA		NR	rs7744813-C		3E-72		0.2	[0.18-0.22] unit increase	NR [NR]	N
1146	chr6	73643288	73643289	rs7744813	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA		OGFRL1, RIMS1, KCNQ5, SLC17A5	rs7744813-?		3E-205				Affymetrix, Illumina [NR] (imputed)	N
1146	chr6	73643288	73643289	rs7744813	31816047	Boutin TS	2019-12-09	Hum Mol Genet	Insights into the genetic basis of retinal detachment.	High myopia	2,737 British ancestry cases, 47,635 British ancestry controls	NA		KCNQ5	rs7744813-?	0.579	3E-11		1.2091986	[1.14-1.28]	Affymetrix [NR] (imputed)	N
1146	chr6	73643288	73643289	rs7744813	31809533	Han X	2019-09-06	Hum Mol Genet	Genome-wide association analysis of 95 549 individuals identifies novel loci and genes influencing optic disc morphology.	Optic disc size	67,040 British ancestry individuals	28,509 European ancestry individuals		KCNQ5	rs7744813-A	0.59	1E-15		0.02	unit decrease	Affymetrix [8928767] (imputed)	N
1146	chr6	73643288	73643289	rs7744813	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA		KCNQ5	rs7744813-A	0.5905	5E-48		14.555	[NR] z score decrease	Affymetrix, Illumina [~ 11000000] (imputed)	N
1146	chr6	73643288	73643289	rs7744813	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Myopia (age of diagnosis)	104,293 European ancestry individuals	NA		NR	rs7744813-A	0.5927	7E-38		0.0928	[0.079-0.107] unit decrease	Illumina [~ 10600000] (imputed)	N
1146	chr6	73643288	73643289	rs7744813	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Myopia	106,086 European ancestry cases, 85,757 European ancestry controls	NA		KCNQ5	rs7744813-?	NR	2E-63		1.1325028	[1.12-1.15]	Illumina [13762925] (imputed)	N
1146	chr6	73643288	73643289	rs7744813	27020472	Fan Q	2016-03-29	Nat Commun	Meta-analysis of gene-environment-wide association scans accounting for education level identifies additional loci for refractive error.	Spherical equivalent (joint analysis main effects and education interaction)	2,604 Erasmus Rucphen population isolate individuals, 456 Sardinian population isolate individuals, 36,976 European ancestry individuals, 5,971 East Asian ancestry individuals, 2,256 Malay ancestry individuals, 2,088 Indian ancestry individuals	NA		KCNQ5	rs7744813-A	0.47	9E-16	(European ancestry)			Affymetrix, Illumina [up to 7331415] (imputed)	N
1146	chr6	73643288	73643289	rs7744813	27020472	Fan Q	2016-03-29	Nat Commun	Meta-analysis of gene-environment-wide association scans accounting for education level identifies additional loci for refractive error.	Spherical equivalent (joint analysis main effects and education interaction)	2,604 Erasmus Rucphen population isolate individuals, 456 Sardinian population isolate individuals, 36,976 European ancestry individuals, 5,971 East Asian ancestry individuals, 2,256 Malay ancestry individuals, 2,088 Indian ancestry individuals	NA		KCNQ5	rs7744813-A	0.43	4E-19				Affymetrix, Illumina [up to 7331415] (imputed)	N
1146	chr6	73643288	73643289	rs7744813	23396134	Verhoeven VJ	2013-02-10	Nat Genet	Genome-wide meta-analyses of multiancestry cohorts identify multiple new susceptibility loci for refractive error and myopia.	Refractive error	37,382 European ancestry individuals, 3,995 Chinese ancestry individuals, 2,273 Malay ancestry individuals, 2,108 Indian ancestry individuals	NA		KCNQ5	rs7744813-C	0.41	4E-9		0.112	[0.075-0.149] unit increase	Affymetrix, Illumina [2500000] (imputed)	N
1146	chr6	73649410	73649411	rs1317538	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	6q13	NR	rs1317538-A		9E-14		0.08	[0.06-0.1] unit increase	NR [NR]	N
1146	chr6	73651883	73651884	rs117461877	33106475	Li QS	2020-10-26	Transl Psychiatry	Genome-wide association studies of antidepressant class response and treatment-resistant depression.	Response to norepinephrine-dopamine reuptake inhibitors (responders vs non-responders)	3,971 European ancestry responders, 3,512 European ancestry non-responders	NA	6q13	NR	rs117461877-T	NR	7E-6		0.4295	NR	Illumina [at least 560000] (imputed)	N
1146	chr6	73657713	73657714	rs12195276	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	6q13	KCNQ5	rs12195276-T	0.7233	2E-21		0.1852	[0.15-0.22] unit decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1147	chr6	73663813	73663814	rs13206405	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	6q13	KCNQ5	rs13206405-A	0.2015	1E-11		0.0212	[0.015-0.027] unit increase	Affymetrix [19819130] (imputed)	N
1147	chr6	73663813	73663814	rs13206405	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	6q13	KCNQ5	rs13206405-A	0.2015	4E-6		0.0134	[0.0077-0.0191] unit decrease	Affymetrix [19819130] (imputed)	N
1147	chr6	73663813	73663814	rs13206405	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	6q13	KCNQ5	rs13206405-A	0.2015	5E-31		0.0344	[0.029-0.04] unit increase	Affymetrix [19819130] (imputed)	N
1147	chr6	73663813	73663814	rs13206405	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	6q13		rs13206405-?	NR	1E-41				NR [~ 8900000] (imputed)	N
1147	chr6	73670095	73670101	rs141651520	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FEV1/FVC)	48,943 European ancestry individuals	57,176 European ancestry individuals, 38,199 individuals.	6q13	KCNQ5	rs141651520-?	0.201	1E-17		0.042	[0.032-0.052] unit increase	Affymetrix [27624732] (imputed)	N
1147	chr6	73681782	73681783	rs9360623	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Frontal pole volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	6q13	KCNQ5	rs9360623-?		8E-6				Illumina [4322238] (imputed)	N
1147	chr6	73730616	73730617	rs4706522	24869959	Jacobs LC	2014-08-01	JAMA Dermatol	Intrinsic and extrinsic risk factors for sagging eyelids.	Upper eyelid sagging severity	6,631 European ancestry individuals	NA	6q13	KCNQ5	rs4706522-A	0.12	7E-6	(dominant)	0.11	[NR] unit increase	Illumina [at least 2149245] (imputed)	N
1147	chr6	73737715	73737716	rs9446824	28644415	Guenard F	2017-06-23	Nutrients	Genome-Wide Association Study of Dietary Pattern Scores.	Western dietary pattern	141 individuals	NA	6q13	KCNQ5	rs9446824-?	NR	9E-6				Illumina [2668805]	N
1147	chr6	73738660	73738661	rs947612	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	6q13		rs947612-A	NR	6E-10		0.012	[0.0083-0.0157] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1147	chr6	73738660	73738661	rs947612	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	6q13		rs947612-A	NR	3E-10		0.014	[0.0097-0.0183] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1147	chr6	73738660	73738661	rs947612	32060260	Campos AI	2020-02-14	Nat Commun	Insights into the aetiology of snoring from observational and genetic investigations in the UK Biobank.	Snoring	152,302 British ancestry cases, 256,015 British ancestry controls	NA	6q13	NR	rs947612-G	NR	2E-8		0.0067289	[0.0044-0.0091] unit increase	NR [11010159] (imputed)	N
1147	chr6	73738660	73738661	rs947612	32060260	Campos AI	2020-02-14	Nat Commun	Insights into the aetiology of snoring from observational and genetic investigations in the UK Biobank.	Snoring	151,836 British ancestry cases, 255,230 British ancestry controls	NA	6q13	NR	rs947612-G	NR	1E-6	(adjusted for BMI)	0.005752	[0.0034-0.0081] unit increase	NR [11010159] (imputed)	N
1147	chr6	73738660	73738661	rs947612	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Snoring	359,916 European ancestry individuals	NA	6q13	NR	rs947612-G	0.2474	1E-8		1.03	[1.02-1.04]	Affymetrix, Illumina [10862568] (imputed)	N
1147	chr6	73738660	73738661	rs947612	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	6q13	NR	rs947612-G	NR	2E-13		0.014	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
1147	chr6	73738660	73738661	rs947612	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	6q13	NR	rs947612-A	0.24	1E-6	(Japanese, Male)	0.028	[0.016-0.04] unit decrease	Illumina [6108953] (imputed)	N
1147	chr6	73738660	73738661	rs947612	26039976	Wei Z	2015-06-17	Sci Rep	Genome-Wide Association Studies of HIV-1 Host Control in Ethnically Diverse Chinese Populations.	HIV-1 viral setpoint	326 Han Chinese ancestry cases, 58 Dai Chinese ancestry cases, 40 Jingpo Chinese ancestry cases, 83 Uygur Chinese ancestry cases, 11 Hui Chinese ancestry cases, 20 East Asian cases	NA	6q13	KCNQ5	rs947612-A	0.2661	2E-6	(Han)	0.3459	unit increase	Illumina [up to 528294]	N
1147	chr6	73738660	73738661	rs947612	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6q13	C6orf148	rs947612-?	NR	5E-6	(proline)	0.18461584	[0.11-0.26] unit increase	Affymetrix [at least 2500000] (imputed)	N
1147	chr6	73742151	73742152	rs7776021	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	6q13		rs7776021-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1147	chr6	73783507	73783508	rs9446832	30487263	Pollack S	2018-11-28	Diabetes	Multiethnic Genome-wide Association Study of Diabetic Retinopathy using Liability Threshold Modeling of Duration of Diabetes and Glycemic Control.	Proliferative diabetic retinopathy (vs no DR)	398 European ancestry cases, 1,970 European ancestry controls, 1,097 African American cases, 941 African American controls	1,354 East Asian ancestry cases, 1130 East Asian ancestry controls, 801 European ancestry cases, 2,880 European ancestry controls, 232 Hispanic cases, 1,048 Hispanic controls	6q13	NR	rs9446832-?	NR	2E-6	(AA)			Affymetrix, Illumina [NR] (imputed)	N
1148	chr6	73795199	73795200	rs7739433	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6q13	NR	rs7739433-?	NR	8E-6		4.467	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1148	chr6	73811190	73811191	rs141249844	28282560	Pott J	2017-02-24	Atherosclerosis	Genome-wide meta-analysis identifies novel loci of plaque burden in carotid artery.	Carotid plaque burden	7,189 European ancestry individuals	NA	6q13	KCNQ5	rs141249844-T	NR	6E-7		0.47479382	[0.29-0.66] unit increase	Affymetrix [9576485] (imputed)	N
1148	chr6	73891433	73891434	rs10498891	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	6q13	NA	rs10498891-T	0.9321	3E-9		0.0205	[0.014-0.027] unit increase	NR [~ 27400000] (imputed)	N
1148	chr6	73910107	73910108	rs72948836	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6q13	NR	rs72948836-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
1148	chr6	73910107	73910108	rs72948836	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	6q13		rs72948836-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1150	chr6	74063588	74063589	rs141223599	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Rheumatic fever	1,115 European ancestry cases, 88,076 European ancestry controls	NA	6q13	NR	rs141223599-?	NR	3E-7		2.5077	[1.22-3.8] unit decrease	Illumina [at least 560000] (imputed)	N
1150	chr6	74095455	74095456	rs145801191	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	6q13	NR	rs145801191-?	NR	3E-6		0.346995	[0.2-0.49] unit increase	NR [13958389] (imputed)	N
1150	chr6	74120349	74120350	rs543895501	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Lysophosphatidylcholine levels	2,045 European ancestry individuals	NA	6q13	DDX43	rs543895501-T	NR	3E-8	(Total_LPC)	0.8669	[0.56-1.17] unit increase	Illumina [~ 9300000] (imputed)	N
1150	chr6	74139377	74139378	rs311671	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	6q13	NR	rs311671-?	NR	5E-6	(AA)	0.493	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1150	chr6	74139377	74139378	rs311671	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	6q13	NR	rs311671-?	NR	4E-7	(AA)	0.4928	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1151	chr6	74220930	74220931	rs144917451	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	6q13		rs144917451-T	NR	7E-9		0.0477	[0.032-0.064] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
1151	chr6	74231131	74231132	rs3806981	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	6q13		rs3806981-?	NR	1E-7				NR [~ 8900000] (imputed)	N
1151	chr6	74261262	74261263	rs146736641	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	6q13		rs146736641-A	NR	4E-9		0.0509	[0.034-0.068] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
1152	chr6	74325402	74325403	rs485802	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6q13	CD109	rs485802-?	NR	2E-6	(PC 34:2)	0.16415991	[0.096-0.232] unit increase	Affymetrix [at least 2500000] (imputed)	N
1152	chr6	74333041	74333042	rs7744053	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	6q13		rs7744053-A	NR	3E-8		0.0145	[0.0094-0.0196] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
1152	chr6	74341683	74341684	rs36131846	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	6q13	NR	rs36131846-T	NR	1E-9		0.0166	[0.011-0.022] unit increase	Affymetrix [9000000] (imputed)	N
1152	chr6	74404770	74404771	rs79717953	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	20,917 European ancestry cases, 440,906 European ancestry controls, 14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	6q13		rs79717953-T	NR	2E-9		0.1406	[0.095-0.186] unit increase	Affymetrix, Illumina [25841367] (imputed)	N
1152	chr6	74404770	74404771	rs79717953	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Angina pectoris	14,007 East Asian ancestry cases, 145,158 East Asian ancestry controls	NA	6q13		rs79717953-T	0.08237169	3E-8		0.13832842	[0.09-0.187] unit increase	Illumina [13426705] (imputed)	N
1152	chr6	74404770	74404771	rs79717953	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	6q13	LOC101928489	rs79717953-C	0.991953	2E-17		0.0837837	[0.064-0.103] unit increase	NR [13737936] (imputed)	N
1152	chr6	74404770	74404771	rs79717953	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6q13		rs79717953-?	NR	2E-16		0.0914096	[0.07-0.113] unit increase	Affymetrix [20259828] (imputed)	N
1152	chr6	74415867	74415868	rs56171536	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	6q13		rs56171536-C	0.050499577	4E-8		0.1683329	[0.11-0.23] unit increase	Illumina [13427135] (imputed)	N
1152	chr6	74415867	74415868	rs56171536	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 142,336 Japanese ancestry controls	NA	6q13	CD109	rs56171536-?	NR	4E-8		0.120251	[0.077-0.163] unit increase	Illumina [19707525] (imputed)	N
1152	chr6	74437988	74437989	rs9442952	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	6q13		rs9442952-?	NR	2E-39				NR [~ 8900000] (imputed)	N
1153	chr6	74458736	74458737	rs9447004	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	6q13	CD109	rs9447004-A	0.483926	1E-37		0.0234713	[0.02-0.027] unit increase	NR [13737936] (imputed)	N
1153	chr6	74458736	74458737	rs9447004	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6q13	NR	rs9447004-?	NR	2E-44	(EA, CD109 antigen)			Affymetrix [509946]	N
1153	chr6	74458736	74458737	rs9447004	24068962	O'Seaghdha CM	2013-09-19	PLoS Genet	Meta-analysis of genome-wide association studies identifies six new Loci for serum calcium concentrations.	Calcium levels	39,400 European ancestry individuals	Up to 21,679 European ancestry individuals	6q13	CD109	rs9447004-A	0.48	3E-6		0.012	[0.0061-0.0179] unit increase	Affymetrix, Illumina [2500000] (imputed)	N
1153	chr6	74463893	74463894	rs6909201	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6q13	CD109	rs6909201-G	0.47171875	1E-115	(CD109, 3290_50_2)	0.5321522	[0.49-0.58] unit increase	Illumina [> 1000000] (imputed)	N
1153	chr6	74484968	74484969	rs34331440	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	6q13	NR	rs34331440-C	NR	9E-14		0.0279	[0.021-0.035] unit decrease	Affymetrix [9000000] (imputed)	N
1153	chr6	74486370	74486371	rs4263551	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	6q13	NR	rs4263551-C	0.5165	2E-53		0.003464	[0.003-0.0039] unit decrease	Affymetrix [NR] (imputed)	N
1153	chr6	74493431	74493432	rs10455097	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6q13	CD109	rs10455097-C	0.4933538	3E-46	(CD109 antigen)	0.6025	[0.52-0.68] unit increase	Affymetrix [509946]	N
1153	chr6	74495256	74495257	rs6453700	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6q13		rs6453700-?	NR	6E-13		0.0145758	[0.01-0.019] unit increase	Affymetrix [20259828] (imputed)	N
1153	chr6	74495848	74495849	rs7769064	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	6q13		rs7769064-G	NR	5E-63		0.0393	[0.035-0.044] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
1153	chr6	74503729	74503730	rs6903575	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Uterine fibroids	21,024 European ancestry cases, 237,694 European ancestry controls, 14,475 East Asian ancestry cases, 65,733 East Asian ancestry controls	NA	6q13		rs6903575-A	NR	5E-13		0.0618	[0.045-0.078] unit decrease	Affymetrix, Illumina [25795146] (imputed)	N
1153	chr6	74503729	74503730	rs6903575	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6q13	CD109	rs6903575-A	0.522	7E-69	(CD109 antigen, CD109.3290.50.2)	0.41	[0.37-0.45] unit increase	Affymetrix [10572788] (imputed)	N
1153	chr6	74506219	74506220	rs10943130	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6q13		rs10943130-?	NR	1E-40		0.0260029	[0.022-0.03] unit increase	Affymetrix [20259828] (imputed)	N
1153	chr6	74506219	74506220	rs10943130	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	6q13	CD109	rs10943130-C	0.48608	1E-6	(women)	0.0217597	[0.013-0.031] unit increase	NR [17166351] (imputed)	N
1153	chr6	74506219	74506220	rs10943130	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	6q13	CD109	rs10943130-C	0.485751	1E-12		0.0228461	[0.016-0.029] unit increase	NR [17166351] (imputed)	N
1153	chr6	74511979	74511980	rs1973480	33654266	Bonelli R	2021-03-02	Commun Biol	Identification of genetic factors influencing metabolic dysregulation and retinal support for MacTel, a retinal disorder.	Macular telangiectasia type 2	931 European ancestry cases, 3,745 European ancestry controls	NA	6q13	NR	rs1973480-G	0.295	4E-6			NR	Illumina [7289516] (imputed)	N
1153	chr6	74511979	74511980	rs1973480	33654266	Bonelli R	2021-03-02	Commun Biol	Identification of genetic factors influencing metabolic dysregulation and retinal support for MacTel, a retinal disorder.	Macular telangiectasia type 2	1,067 European or unknown ancestry cases, 3,799 European or unknown ancestry controls	NA	6q13	NR	rs1973480-G	0.295	3E-6		1.33	[1.18-1.5]	Illumina [7289516] (imputed)	N
1153	chr6	74512686	74512687	rs1973483	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CD109	5,363 Icelandic ancestry individuals	NA	6q13		rs1973483-T	0.4806	5E-202		0.521406	[0.49-0.56] unit increase	Illumina [7506463] (imputed)	N
1153	chr6	74513718	74513719	rs41266753	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CD109	5,363 Icelandic ancestry individuals	NA	6q13		rs41266753-T	0.1812	1E-9		0.1465	[0.099-0.194] unit increase	Illumina [7506463] (imputed)	N
1153	chr6	74533197	74533198	rs766189794	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Heel bone mineral density T score	445,855 European ancestry individuals	NA	6q13		rs766189794-?	NR	4E-9		0.207831	[0.14-0.28] unit increase	NR [9800000] (imputed)	N
1153	chr6	74545257	74545258	rs3931092	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Diastolic blood pressure change trajectory	5,304 African American individuals	6,500 African American individuals	6q13	NR	rs3931092-C	0.2887	8E-7		0.1101	[0.066-0.154] mmHg decrease	Affymetrix, Illumina [NR] (imputed)	N
1156	chr6	74871230	74871231	rs6912405	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6q13	CD109	rs6912405-G	0.462	9E-6	(Free T3 )	0.02	[NR] pg/mL increase	Illumina [899892]	N
1156	chr6	74962191	74962192	rs181986557	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6q13		rs181986557-?	NR	1E-12		0.132928	[0.092-0.174] unit decrease	Affymetrix [20259828] (imputed)	N
1156	chr6	74967055	74967056	rs1387416	27595289	Goyal RK	2016-09-05	Bone Marrow Transplant	Novel HLA-DP region susceptibility loci associated with severe acute GvHD.	Acute graft versus host disease in bone marrow transplantation (donor effect)	315 European ancestry donors (recipients with acute graft versus host disease), 341 European ancestry donors (recipients without graft versus host disease)	NA	6q13	LOC101928516	rs1387416-?		8E-7				Affymetrix [905761]	N
1157	chr6	75082242	75082243	rs181812561	26503763	Song J	2015-10-27	Mol Psychiatry	Genome-wide association study identifies SESTD1 as a novel risk gene for lithium-responsive bipolar disorder.	Objective response to lithium treatment in bipolar disorder	323 European ancestry responder cases, 853 European ancestry non-responder cases	NA	6q13	LOC101928516	rs181812561-A	0.02	6E-6		7.69	[NR]	Affymetrix, Illumina [> 8000000] (imputed)	N
1158	chr6	75158265	75158266	rs72960926	23319000	Luykx JJ	2013-01-15	Mol Psychiatry	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (MHPG)	up to 398 European ancestry individuals	NA	6q13	AF086303	rs72960926-A		2E-6		0.3084	unit increase	Illumina [5767231] (imputed)	N
1159	chr6	75326243	75326244	rs62438583	27927641	Ombrello MJ	2016-12-07	Ann Rheum Dis	Genetic architecture distinguishes systemic juvenile idiopathic arthritis from other forms of juvenile idiopathic arthritis: clinical and therapeutic implications.	Systemic juvenile idiopathic arthritis	178 European ancestry cases, 434 European ancestry controls, 81 Hispanic/Latin American cases, 177 Hispanic/Latin American controls, 511 cases, 6,336 controls	NA	6q13	LOC101928516, COL12A1	rs62438583-?		3E-6	(Dominant)	1.4285715	[1.25-1.67]	Illumina [5600610] (imputed)	N
1160	chr6	75378441	75378442	rs62437771	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 2 levels	252 European ancestry individuals	NA	6q13		rs62437771-C	NR	7E-6		1.6681	[0.96-2.38] unit decrease	Illumina [NR] (imputed)	N
1160	chr6	75447087	75447088	rs7752646	34776419	Brolin K	2021-11-07	J Parkinsons Dis	Insights on Genetic and Environmental Factors in Parkinson's Disease from a Regional Swedish Case-Control Cohort.	Parkinson's disease	929 Swedish ancestry cases, 935 Swedish ancestry controls	NA	6q13		rs7752646-T	0.873	4E-7		0.489	[0.28-0.7]	Illumina [5445841] (imputed)	N
1160	chr6	75455384	75455385	rs2502465	31211820	Deek R	2019-06-18	PLoS One	Genome-wide association analysis of HDL-C in a Lebanese cohort.	High density lipoprotein cholesterol levels	2,700 Lebanese ancestry individuals	NA	6q13	intergenic	rs2502465-T	NR	6E-6	(adjusted)	0.0298	[0.0169-0.0426] unit increase	Illumina [307238]	N
1161	chr6	75532576	75532577	rs6918679	28437668	Jung J	2017-04-14	Psychiatry Res	Genome-wide association study of treatment response to venlafaxine XR in generalized anxiety disorder.	Venlafaxine response in generalised anxiety disorder (responders vs non-responders after 24 weeks)	98 European ancestry cases and controls	NA	6q13	intergenic	rs6918679-A	0.28	8E-7	(CGI)	11.97		Illumina [266820] (imputed)	N
1161	chr6	75539141	75539142	rs16885704	30621171	Coltell O	2019-01-04	Nutrients	Genome-Wide Association Study (GWAS) on Bilirubin Concentrations in Subjects with Metabolic Syndrome: Sex-Specific GWAS Analysis and Gene-Diet Interactions in a Mediterranean Population.	Serum bilirubin levels x sex interaction in metabolic syndrome	188 European ancestry male individuals, 242 European ancestry female individuals	NA	6q13	intergenic	rs16885704-?	NR	1E-7				Illumina [622468]	N
1161	chr6	75545037	75545038	rs532632946	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6q13	NR	rs532632946-G	0.0122	2E-8	(TAGLN)	0.386	NR unit increase	Illumina [1671387] (imputed)	N
1161	chr6	75561590	75561591	rs9293983	29064910	Kure Fischer E	2017-10-23	Int Clin Psychopharmacol	A molecular pathway analysis informs the genetic risk for arrhythmias during antipsychotic treatment.	Antipsychotic drug-induced QTc interval change in schizophrenia	434 European ancestry individuals, 202 African ancestry individuals, 25 individuals	NA	6q13	NR	rs9293983-G	NR	4E-6		6730.0	unit decrease	Affymetrix, Perlegen [1785543] (imputed)	N
1162	chr6	75630331	75630331	rs200269820	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	6q13		rs200269820-CCTTTCATT	NR	3E-7		4.2295	[2.67-5.79] unit increase	Illumina [NR] (imputed)	N
1162	chr6	75679424	75679425	rs149021062	31311600	Namjou B	2019-07-17	BMC Med	GWAS and enrichment analyses of non-alcoholic fatty liver disease identify new trait-associated genes and pathways across eMERGE Network.	Alanine aminotransferase levels in non-alcoholic fatty liver disease	1,075 European ancestry individuals	NA	6q13	intergenic	rs149021062-T	0.0143918	3E-6		0.736343	[0.43-1.04] unit increase	NR [7263501] (imputed)	N
1163	chr6	75778664	75778665	rs7771969	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	6q13		rs7771969-A	NR	3E-6		2.0016	[1.18-2.82] unit increase	Illumina [NR] (imputed)	N
1163	chr6	75810320	75810321	rs515103	29064910	Kure Fischer E	2017-10-23	Int Clin Psychopharmacol	A molecular pathway analysis informs the genetic risk for arrhythmias during antipsychotic treatment.	Antipsychotic drug-induced QTc interval change in schizophrenia	434 European ancestry individuals, 202 African ancestry individuals, 25 individuals	NA	6q13	NR	rs515103-T	NR	5E-6		2260.0	unit decrease	Affymetrix, Perlegen [1785543] (imputed)	N
1163	chr6	75825180	75825181	rs2300795	28881265	Sobalska-Kwapis M	2017-09-01	Eur J Obstet Gynecol Reprod Biol	New variants near RHOJ and C2, HLA-DRA region and susceptibility to endometriosis in the Polish population-The genome-wide association study.	Endometriosis	171 European ancestry cases, 2,934 European ancestry controls	NA	6q13	NR	rs2300795-C	0.01436	5E-7		3.591	[2.107-6.119]	Illumina [274400]	N
1163	chr6	75834970	75834971	rs35523808	33649486	Hardcastle AJ	2021-03-01	Commun Biol	A multi-ethnic genome-wide association study implicates collagen matrix integrity and cell differentiation pathways in keratoconus.	Keratoconus	2,116 European ancestry cases, 24,626 European ancestry controls	1, 389 European ancestry cases, 79,727 European ancestry controls, 759 South Asian ancestry cases, 8,009 South Asian ancestry controls, 405 African ancestry cases, 4,185 African ancestry controls	6q13	COL12A1	rs35523808-A	NR	3E-25		0.662	[0.54-0.79] unit increase	Affymetrix [7701190] (imputed)	N
1163	chr6	75837202	75837203	rs1412710	32528159	Choquet H	2020-06-11	Commun Biol	A multiethnic genome-wide analysis of 44,039 individuals identifies 41 new loci associated with central corneal thickness.	Central corneal thickness	32,292 European ancestry individuals, 9,623 East Asian ancestry individuals, 1,367 Hispanic/Latino individuals, 757 African American  individuals	NA	6q13	COL12A1	rs1412710-?	NA	4E-13		2.23	[1.62-2.84] unit decrease	Affymetrix [5541230] (imputed)	N
1163	chr6	75837202	75837203	rs1412710	29760442	Iglesias AI	2018-05-14	Nat Commun	Cross-ancestry genome-wide association analysis of corneal thickness strengthens link between complex and Mendelian eye diseases.	Central corneal thickness	17,803 European ancestry individuals, 8,107 Asian ancestry individuals	NA	6q13	COL12A1	rs1412710-T	0.24	2E-8		2.26	[1.48-3.04] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1163	chr6	75885552	75885553	rs189842215	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Melanoma	3,122 White British ancestry cases, 271,708 White British ancestry controls	NA	6q13		rs189842215-?	NR	7E-6		1.55555	[1.36-1.75]	NR [674885]	N
1163	chr6	75890347	75890348	rs36099249	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	6q13	Intergenic	rs36099249-T	NR	7E-8	(between families)	5.39	unit decrease	Affymetrix [up to 15107142] (imputed)	N
1164	chr6	75897212	75897213	rs191860862	34779240	Cheng B	2021-11-01	Bone Joint Res	Gut microbiota is associated with bone mineral density : an observational and genome-wide environmental interaction analysis in the UK Biobank cohort.	Femur total bone mineral density x gut microbiota (genus Lactococcus) interaction	2,293 European ancestry individuals	NA	6q13		rs191860862-A	NR	1E-11		0.777	[0.55-1] unit decrease	Affymetrix [509886] (imputed)	N
1164	chr6	75904843	75904844	rs41269313	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Joint mobility (Beighton score)	64,143 European ancestry individuals	NA	6q13	COL12A1	rs41269313-?	NR	3E-7		0.108	[0.149-0.067] unit decrease	Illumina [12039492] (imputed)	N
1164	chr6	75928750	75928751	rs2842453	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	6q14.1		rs2842453-C	0.31	2E-8		5.64	z score increase	Affymetrix [9061022] (imputed)	N
1164	chr6	75928750	75928751	rs2842453	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	6q14.1	NR	rs2842453-C	0.2973	5E-9				NR [9056863] (imputed)	N
1164	chr6	75944973	75944974	rs186993163	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	CAG-170 sp003516765 abundance in stool	5,959 Finnish ancestry individuals	NA	6q14.1		rs186993163-C	0.0234204	4E-8		0.265043	[0.17-0.36] unit decrease	Illumina [7980478] (imputed)	N
1164	chr6	75945749	75945750	rs116278466	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	6q14.1	intergenic	rs116278466-A	0.001	1E-6		34.08	[3.52-329.69]	Illumina [1556551]	N
1165	chr6	76043937	76043938	rs4708181	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	6q14.1	NR	rs4708181-G	0.2965	3E-9				NR [9056863] (imputed)	N
1165	chr6	76091496	76091497	rs72887205	29698431	Roosenboom J	2018-04-26	PLoS One	Mapping genetic variants for cranial vault shape in humans.	Maximum cranial length	4,419 European ancestry individuals	NA	6q14.1	NR	rs72887205-G	0.06154	1E-6		1.512	[0.76-2.26] unit decrease	Illumina [at least 567677] (imputed)	N
1165	chr6	76095084	76095085	rs72887209	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Cerebrospinal AB1-42 levels in normal cognition	305 European ancestry cognitively normal individuals	NA	6q14.1	FILIP1, HMGB1P39, MIR4463	rs72887209-A	0.10	3E-7		0.76	[0.47-1.05] unit increase	Illumina [8257341] (imputed)	N
1166	chr6	76157149	76157150	rs79830845	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6q14.1	NR	rs79830845-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
1166	chr6	76164588	76164589	rs12209223	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	6q14.1		rs12209223-A	NR	3E-52		0.0306	[0.027-0.035] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1166	chr6	76164588	76164589	rs12209223	34450027	Boer CG	2021-08-24	Cell	Deciphering osteoarthritis genetics across 826,690 individuals from 9 populations.	Osteoarthritis (with total hip replacement)	23,021 European ancestry cases, 296,016 European ancestry controls	NA	6q14.1		rs12209223-A	0.1106	2E-29		1.2175006	[1.17644906-1.259984438]	Affymetrix, Illumina [NR] (imputed)	N
1166	chr6	76164588	76164589	rs12209223	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6q14.1	FILIP1	rs12209223-A	NR	3E-18		0.0405421	[0.031-0.05] unit increase	Affymetrix [321016] (imputed)	N
1166	chr6	76164588	76164589	rs12209223	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6q14.1	FILIP1	rs12209223-A	NR	2E-16		0.041695	[0.032-0.052] unit increase	Affymetrix [323123] (imputed)	N
1166	chr6	76164588	76164589	rs12209223	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Osteoarthritis (hip)	15,704 European ancestry cases, 378,169 European ancestry controls	NA	6q14.1	NR	rs12209223-A	0.1	4E-16		1.17	[1.13-1.21]	Affymetrix, Illumina [up to 17000000] (imputed)	N
1166	chr6	76164588	76164589	rs12209223	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6q14.1		rs12209223-?	NR	2E-59				NR [~ 8900000] (imputed)	N
1166	chr6	76164588	76164589	rs12209223	30374069	Styrkarsdottir U	2018-10-29	Nat Genet	Meta-analysis of Icelandic and UK data sets identifies missense variants in SMO, IL11, COL11A1 and 13 more new loci associated with osteoarthritis.	Osteoarthritis (hip)	17,151 European ancestry cases, 596,639 European ancestry controls	NA	6q14.1	FILIP1	rs12209223-A	NR	3E-15	(additive)	1.16	[1.12-1.21]	Affymetrix, Illumina [11554240] (imputed)	N
1166	chr6	76164588	76164589	rs12209223	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	6q14.1	FILIP1	rs12209223-A	0.116	5E-25		0.051	[0.041-0.061] unit increase	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
1166	chr6	76164728	76164729	rs9359123	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6q14.1	FILIP1, RP11-415D17.4	rs9359123-T	NR	5E-11		0.0264253	[0.019-0.034] unit decrease	Affymetrix [321016] (imputed)	N
1166	chr6	76164728	76164729	rs9359123	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6q14.1	FILIP1, RP11-415D17.4	rs9359123-T	NR	1E-8		0.0249336	[0.016-0.034] unit decrease	Affymetrix [323123] (imputed)	N
1166	chr6	76166163	76166164	rs12212816	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	6q14.1		rs12212816-T	0.170315	5E-19		0.0236455	[0.018-0.029] unit increase	Illumina [13479295] (imputed)	N
1166	chr6	76166163	76166164	rs12212816	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	6q14.1	LOC101928540	rs12212816-?	NR	2E-19		0.03391738	[0.027-0.041] unit increase	Illumina [27896057] (imputed)	N
1166	chr6	76172517	76172518	rs150144698	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6q14.1	NR	rs150144698-T	0.01916	5E-10	(SHMT2)	0.754	NR unit increase	Illumina [1671387] (imputed)	N
1166	chr6	76183843	76183844	rs72877517	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6q14.1	FILIP1	rs72877517-A	NR	3E-8		0.0383569	[0.025-0.052] unit increase	Affymetrix [323123] (imputed)	N
1166	chr6	76188329	76188330	rs12211255	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6q14.1	FILIP1	rs12211255-A	NR	6E-14		0.0380692	[0.028-0.048] unit increase	Affymetrix [321114] (imputed)	N
1166	chr6	76199218	76199219	rs10943249	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6q14.1	FILIP1	rs10943249-T	NR	2E-10		0.0285039	[0.02-0.037] unit increase	Affymetrix [321114] (imputed)	N
1166	chr6	76199218	76199219	rs10943249	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6q14.1	NR	rs10943249-?	NR	2E-23				Affymetrix [~ 8270000] (imputed)	N
1166	chr6	76199696	76199697	rs17496664	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	6q14.1		rs17496664-T	NR	4E-8		0.0468	[0.03-0.063] unit decrease	Affymetrix, Illumina [25845091] (imputed)	N
1166	chr6	76199879	76199880	rs11752498	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	6q14.1		rs11752498-?	NR	3E-11				NR [~ 8900000] (imputed)	N
1166	chr6	76215697	76215698	rs141932426	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Stem cell factor levels	8,290 Finnish ancestry individuals	NA	6q14.1	NR	rs141932426-G		7E-6		1.1651	[0.67-1.66] SD units decrease	NR [10700000] (imputed)	N
1166	chr6	76237740	76237741	rs12207675	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in non-smokers	77,113 European ancestry women, 47,319 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	6q14.1	FILIP1	rs12207675-T	0.8857	5E-8		0.0329	[0.021-0.045] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1166	chr6	76237740	76237741	rs12207675	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in non-smokers	77,113 European ancestry women, 47,319 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	6q14.1	FILIP1	rs12207675-T	0.8857	3E-6	(men)	0.0423	[0.025-0.06] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1166	chr6	76237740	76237741	rs12207675	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	6q14.1	FILIP1	rs12207675-T	0.8857	7E-6	(men)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1166	chr6	76237740	76237741	rs12207675	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	6q14.1	FILIP1	rs12207675-T	0.8857	5E-7	(women)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1166	chr6	76237740	76237741	rs12207675	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	6q14.1	FILIP1	rs12207675-T	0.8857	2E-10				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1166	chr6	76237740	76237741	rs12207675	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	6q14.1	FILIP1	rs12207675-T	0.8857	7E-6	(men)	0.0347	[0.02-0.05] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1166	chr6	76237740	76237741	rs12207675	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	6q14.1	FILIP1	rs12207675-T	0.8857	7E-10		0.0333	[0.023-0.044] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1166	chr6	76237740	76237741	rs12207675	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	6q14.1	FILIP1	rs12207675-T	0.8857	2E-6	(women)	0.0328	[0.019-0.046] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1166	chr6	76237740	76237741	rs12207675	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6q14.1	FILIP1	rs12207675-T	0.8825	7E-6	(EA,women)	0.0304	[0.017-0.044] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1166	chr6	76237740	76237741	rs12207675	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6q14.1	FILIP1	rs12207675-T	0.8825	3E-9	(EA)	0.0308	[0.021-0.041] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1166	chr6	76237740	76237741	rs12207675	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6q14.1	FILIP1	rs12207675-T	0.8823	2E-8	(EA,men)	0.0438	[0.028-0.059] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1166	chr6	76237740	76237741	rs12207675	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6q14.1	FILIP1	rs12207675-T	0.8823	1E-7	(EA, women)	0.0373	[0.024-0.051] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1166	chr6	76237740	76237741	rs12207675	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6q14.1	FILIP1	rs12207675-T	0.8823	1E-13	(EA)	0.0408	[0.03-0.052] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1166	chr6	76239261	76239262	rs13192994	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6q14.1	FILIP1	rs13192994-C	0.14490000000000003	3E-9	(EA)	0.0367	[0.025-0.049] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1166	chr6	76239261	76239262	rs13192994	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6q14.1	FILIP1	rs13192994-C	0.14490000000000003	2E-6	(EA, men)	0.0457	[0.027-0.065] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1166	chr6	76239261	76239262	rs13192994	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6q14.1	FILIP1	rs13192994-C	0.14500000000000002	9E-6	(EA, men)	0.0463	[0.026-0.067] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1166	chr6	76239261	76239262	rs13192994	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6q14.1	FILIP1	rs13192994-C	0.14490000000000003	1E-7	(EA)	0.0368	[0.023-0.051] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1166	chr6	76239261	76239262	rs13192994	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6q14.1	FILIP1	rs13192994-?	0.14490000000000003	7E-9	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1166	chr6	76239261	76239262	rs13192994	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6q14.1	FILIP1	rs13192994-?	0.14490000000000003	6E-6	(EA, men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1166	chr6	76240637	76240638	rs72883031	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	6q14.1	FILIP1	rs72883031-A	0.0116761966481189	1E-7	(O_Lactobacillales_HB)	1.57672	[0.99-2.16] unit decrease	Illumina [7711310] (imputed)	N
1166	chr6	76241526	76241527	rs9350591	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Osteoarthritis (hip)	15,704 European ancestry cases, 378,169 European ancestry controls	NA	6q14.1	FILIP1, SENP6	rs9350591-T	0.11	2E-13		1.1431642	[1.103320203-1.184447001]	Affymetrix, Illumina [up to 17000000] (imputed)	N
1166	chr6	76241526	76241527	rs9350591	30374069	Styrkarsdottir U	2018-10-29	Nat Genet	Meta-analysis of Icelandic and UK data sets identifies missense variants in SMO, IL11, COL11A1 and 13 more new loci associated with osteoarthritis.	Osteoarthritis (hip)	17,151 European ancestry cases, 596,639 European ancestry controls	NA	6q14.1	NR	rs9350591-T	0.11	8E-12		1.13304	[NR]	Affymetrix, Illumina [11554240] (imputed)	N
1166	chr6	76265641	76265642	rs9360921	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	6q14.1	SENP6	rs9360921-T	0.89	3E-13		0.042	[NR] unit decrease	Affymetrix, Illumina [2834208] (imputed)	N
1166	chr6	76282482	76282483	rs12199441	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	6q14.1		rs12199441-C	0.32	5E-9		5.85	z score increase	Affymetrix [9061022] (imputed)	N
1167	chr6	76297499	76297500	rs141407200	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6q14.1	RP11-474L11.3	rs141407200-C	NR	1E-8		0.0565378	[0.037-0.076] unit increase	Affymetrix [323123] (imputed)	N
1167	chr6	76301220	76301221	rs486777	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	6q14.1		rs486777-A	0.34	1E-8		5.71	z score increase	Affymetrix [9061022] (imputed)	N
1167	chr6	76350974	76350975	rs116880189	34779240	Cheng B	2021-11-01	Bone Joint Res	Gut microbiota is associated with bone mineral density : an observational and genome-wide environmental interaction analysis in the UK Biobank cohort.	Femur total bone mineral density x gut microbiota (genus Lactococcus) interaction	2,293 European ancestry individuals	NA	6q14.1		rs116880189-C	NR	3E-10		0.666	[0.46-0.87] unit decrease	Affymetrix [509886] (imputed)	N
1167	chr6	76363376	76363377	rs72556249	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6q14.1	SENP6	rs72556249-G	0.4931	3E-7		0.0348	[0.021-0.048] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1167	chr6	76375016	76375017	rs35079953	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	6q14.1		rs35079953-C	NR	4E-8		0.0168	[0.011-0.023] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1167	chr6	76375823	76375824	rs150909980	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6q14.1	SENP6	rs150909980-C	NR	1E-10		0.0412885	[0.029-0.054] unit increase	Affymetrix [321016] (imputed)	N
1167	chr6	76396368	76396369	rs142791556	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of apolipoprotein B to apolipoprotein A1 levels	115,082 European ancestry individuals	NA	6q14.1		rs142791556-T	0.969354	2E-8		0.0667093	[0.044-0.09] unit increase	NR [11722792] (imputed)	N
1168	chr6	76432115	76432116	rs62415601	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	6q14.1		rs62415601-?	NR	4E-11				NR [~ 8900000] (imputed)	N
1168	chr6	76439386	76439386	rs554079670	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6q14.1	SENP6	rs554079670-AT	NR	6E-9		0.0242955	[0.016-0.032] unit increase	Affymetrix [323123] (imputed)	N
1168	chr6	76444359	76444360	rs2748952	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6q14.1		rs2748952-?	NR	1E-25				NR [~ 8900000] (imputed)	N
1168	chr6	76450284	76450284	rs138967575	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6q14.1	MYO6	rs138967575-T	NR	5E-9		0.022378	[0.015-0.03] unit decrease	Affymetrix [321016] (imputed)	N
1168	chr6	76458425	76458426	rs9352241	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6q14.1	MYO6	rs9352241-T	NR	9E-9		0.0245833	[0.016-0.033] unit increase	Affymetrix [321114] (imputed)	N
1168	chr6	76466610	76466610	rs371732070	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6q14.1	MYO6	rs371732070-GTGTA	NR	1E-9		0.0230659	[0.016-0.031] unit increase	Affymetrix [321016] (imputed)	N
1168	chr6	76493170	76493171	rs149740635	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Stem cell factor levels	8,290 Finnish ancestry individuals	NA	6q14.1	NR	rs149740635-C		6E-6		1.177	[0.68-1.67] SD units increase	NR [10700000] (imputed)	N
1168	chr6	76495881	76495882	rs9443189	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	6q14.1	NR	rs9443189-A	NR	3E-17		1.075	[1.06-1.09]	Affymetrix, Illumina [29235255] (imputed)	N
1168	chr6	76495881	76495882	rs9443189	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	10,368 African ancestry cases, 10,986 African ancestry controls	NA	6q14.1	NR	rs9443189-A	0.473	2E-6		1.105	[1.06-1.15]	Affymetrix, Illumina [18877980] (imputed)	N
1168	chr6	76495881	76495882	rs9443189	25217961	Al Olama AA	2014-09-14	Nat Genet	A meta-analysis of 87,040 individuals identifies 23 new susceptibility loci for prostate cancer.	Prostate cancer	34,379 European ancestry cases, 33,164 European ancestry controls, 5,327 African ancestry cases, 5,136 African ancestry controls, 2,563 Japanese ancestry cases, 4,391 Japanese ancestry controls, 1,034 Latino cases, 1,046 Latino controls	NA	6q14.1	MYO6	rs9443189-G	0.14	4E-8		1.08	[1.05-1.11]	Affymetrix, Illumina [up to 16852405] (imputed)	N
1168	chr6	76536332	76536333	rs1280049	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	6q14.1	NR	rs1280049-A	NR	4E-8		5.494	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1169	chr6	76650318	76650319	rs9359151	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6q14.1	IMPG1	rs9359151-G	NR	2E-8		0.0286245	[0.019-0.039] unit increase	Affymetrix [323123] (imputed)	N
1169	chr6	76663308	76663308	rs199629641	34779240	Cheng B	2021-11-01	Bone Joint Res	Gut microbiota is associated with bone mineral density : an observational and genome-wide environmental interaction analysis in the UK Biobank cohort.	Femur total bone mineral density x gut microbiota (genus Lactococcus) interaction	2,293 European ancestry individuals	NA	6q14.1		rs199629641-CT	NR	4E-8		0.393	[0.25-0.53] unit decrease	Affymetrix [509886] (imputed)	N
1169	chr6	76670030	76670031	rs142723847	34779240	Cheng B	2021-11-01	Bone Joint Res	Gut microbiota is associated with bone mineral density : an observational and genome-wide environmental interaction analysis in the UK Biobank cohort.	Femur total bone mineral density x gut microbiota (genus Lactococcus) interaction	2,293 European ancestry individuals	NA	6q14.1		rs142723847-T	NR	3E-8		0.425	[0.27-0.58] unit decrease	Affymetrix [509886] (imputed)	N
1170	chr6	76688805	76688806	rs58806982	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	6q14.1	MYO6, IMPG1	rs58806982-?	NR	5E-8	(African)			Affymetrix, Illumina [18800000] (imputed)	N
1170	chr6	76747895	76747896	rs150815178	34779240	Cheng B	2021-11-01	Bone Joint Res	Gut microbiota is associated with bone mineral density : an observational and genome-wide environmental interaction analysis in the UK Biobank cohort.	Femur total bone mineral density x gut microbiota (genus Lactococcus) interaction	2,293 European ancestry individuals	NA	6q14.1		rs150815178-A	NR	2E-9		0.412	[0.28-0.55] unit decrease	Affymetrix [509886] (imputed)	N
1170	chr6	76760394	76760395	rs144760455	34779240	Cheng B	2021-11-01	Bone Joint Res	Gut microbiota is associated with bone mineral density : an observational and genome-wide environmental interaction analysis in the UK Biobank cohort.	Femur total bone mineral density x gut microbiota (genus Lactococcus) interaction	2,293 European ancestry individuals	NA	6q14.1		rs144760455-A	NR	3E-9		0.411	[0.28-0.55] unit decrease	Affymetrix [509886] (imputed)	N
1171	chr6	76847556	76847557	rs141513476	34779240	Cheng B	2021-11-01	Bone Joint Res	Gut microbiota is associated with bone mineral density : an observational and genome-wide environmental interaction analysis in the UK Biobank cohort.	Femur total bone mineral density x gut microbiota (genus Lactococcus) interaction	2,293 European ancestry individuals	NA	6q14.1		rs141513476-C	NR	2E-8		0.453	[0.3-0.61] unit decrease	Affymetrix [509886] (imputed)	N
1172	chr6	76986550	76986551	rs151299662	29213071	Mendez-Giraldez R	2017-12-06	Sci Rep	GWAS of the electrocardiographic QT interval in Hispanics/Latinos generalizes previously identified loci and identifies population-specific signals.	QT interval	15,997 Hispanic/Latino individuals	NA	6q14.1	IMPG1	rs151299662-T	0.01	7E-7		9.7	[5.86-13.54] ms increase	Affymetrix, Illumina [up to 17586686] (imputed)	N
1173	chr6	77079321	77079322	rs140678586	34779240	Cheng B	2021-11-01	Bone Joint Res	Gut microbiota is associated with bone mineral density : an observational and genome-wide environmental interaction analysis in the UK Biobank cohort.	Femur total bone mineral density x gut microbiota (genus Lactococcus) interaction	2,293 European ancestry individuals	NA	6q14.1		rs140678586-A	NR	3E-8		0.483	[0.31-0.65] unit decrease	Affymetrix [509886] (imputed)	N
1173	chr6	77084618	77084619	rs184670665	33075057	Li X	2020-10-19	PLoS Genet	Automated feature extraction from population wearable device data identified novel loci associated with sleep and circadian rhythms.	Sleep activity levels	90,515 individuals	NA	6q14.1	IMPG1	rs184670665-A	NR	2E-10		0.518	[0.36-0.68] unit decrease	NR [11024754] (imputed)	N
1173	chr6	77109794	77109795	rs117113548	34779240	Cheng B	2021-11-01	Bone Joint Res	Gut microbiota is associated with bone mineral density : an observational and genome-wide environmental interaction analysis in the UK Biobank cohort.	Femur total bone mineral density x gut microbiota (genus Lactococcus) interaction	2,293 European ancestry individuals	NA	6q14.1		rs117113548-A	NR	2E-8		0.483	[0.31-0.65] unit decrease	Affymetrix [509886] (imputed)	N
1173	chr6	77131680	77131681	rs116891860	34779240	Cheng B	2021-11-01	Bone Joint Res	Gut microbiota is associated with bone mineral density : an observational and genome-wide environmental interaction analysis in the UK Biobank cohort.	Femur total bone mineral density x gut microbiota (genus Lactococcus) interaction	2,293 European ancestry individuals	NA	6q14.1		rs116891860-G	NR	2E-8		0.483	[0.31-0.65] unit decrease	Affymetrix [509886] (imputed)	N
1173	chr6	77137596	77137597	rs9341575	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	6q14.1		rs9341575-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1173	chr6	77149657	77149658	rs16887604	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	6q14.1	Intergenic	rs16887604-T	NR	3E-8	(between families)	5.544	unit increase	Affymetrix [up to 15107142] (imputed)	N
1173	chr6	77160812	77160813	rs6917291	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	6q14.1		rs6917291-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1173	chr6	77168085	77168086	rs9447700	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	6q14.1	IMPG1	rs9447700-C	0.69	6E-9		0.03	[0.02-0.04] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
1173	chr6	77190296	77190297	rs117386887	34779240	Cheng B	2021-11-01	Bone Joint Res	Gut microbiota is associated with bone mineral density : an observational and genome-wide environmental interaction analysis in the UK Biobank cohort.	Femur total bone mineral density x gut microbiota (genus Lactococcus) interaction	2,293 European ancestry individuals	NA	6q14.1		rs117386887-T	NR	3E-8		0.464	[0.3-0.63] unit decrease	Affymetrix [509886] (imputed)	N
1174	chr6	77242228	77242229	rs137905693	34779240	Cheng B	2021-11-01	Bone Joint Res	Gut microbiota is associated with bone mineral density : an observational and genome-wide environmental interaction analysis in the UK Biobank cohort.	Femur total bone mineral density x gut microbiota (genus Lactococcus) interaction	2,293 European ancestry individuals	NA	6q14.1		rs137905693-C	NR	3E-8		0.474	[0.31-0.64] unit decrease	Affymetrix [509886] (imputed)	N
1174	chr6	77253109	77253110	rs190871933	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6q14.1	NR	rs190871933-T	0.01394	4E-9	(ACSL4)	0.1015	NR unit increase	Illumina [1671387] (imputed)	N
1174	chr6	77263177	77263178	rs6453914	30294719	Zeng Y	2018-08-24	JAMA Netw Open	Sex Differences in Genetic Associations With Longevity.	Longevity	564 Han Chinese ancestry male centenarian cases, 1,614 Han Chinese ancestry female centenarian cases, 773 Han Chinese ancestry male middle-aged controls, 1,526 Han Chinese ancestry female middle-aged controls	NA	6q14.1	IMPG1	rs6453914-?	0.23	4E-6	(male)	1.624	[1.32-2.00]	Illumina [5595657] (imputed)	N
1174	chr6	77266187	77266188	rs4235898	23648065	Low SK	2013-05-04	Cancer Sci	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (all antimicrotubule drugs)	371 Japanese ancestry cases, 825 Japanese ancestry controls	NA	6q14.1	LOC100131680	rs4235898-A	0.74	1E-6	(Allelic model)	1.718	[1.377-2.142]	Illumina [733202]	N
1174	chr6	77290798	77290799	rs12198063	22864933	O'Donnell PH	2012-01-03	Cancer	Identification of novel germline polymorphisms governing capecitabine sensitivity.	Capecitabine sensitivity	Up to 84 East Asian ancestry lymphoblastoid cell lines, up to 164 European ancestry lymphoblastoid cell lines, up to 173 African ancestry lymphoblastoid cell lines, up to 82 African American lymphoblastoid cell lines	NA	6q14.1	LOC643281	rs12198063-?	NR	8E-6				NR [~ 2000000]	N
1175	chr6	77400272	77400273	rs9352374	32564518	Ye J	2020-06-20	Clin Transl Med	Association between herpes simplex virus 1 exposure and the risk of depression in UK Biobank.	Depressive symptoms x herpes simplex 1 infection interaction	2,839 British ancestry individuals	NA	6q14.1	NR	rs9352374-?		3E-8	(additive)			NR [NR] (imputed)	N
1175	chr6	77400851	77400852	rs9343481	32564518	Ye J	2020-06-20	Clin Transl Med	Association between herpes simplex virus 1 exposure and the risk of depression in UK Biobank.	Depressive symptoms x herpes simplex 1 infection interaction	2,839 British ancestry individuals	NA	6q14.1	NR	rs9343481-?		3E-8	(additive)			NR [NR] (imputed)	N
1175	chr6	77402803	77402804	rs11753479	28090653	Liu Y	2017-01-16	Clin Pharmacol Ther	Genome-Wide Study Links PNPLA3 Variant With Elevated Hepatic Transaminase After Acute Lymphoblastic Leukemia Therapy.	Alanine aminotransferase (ALT) levels after remission induction therapy in actute lymphoblastic leukemia (ALL)	up to 488 European ancestry cases, up to 111 African American cases, up to 60 Hispanic cases, up to 56 other ancestry cases	NA	6q14.1	IMPG1	rs11753479-G		5E-6	(Hispanic)	2.3255813	[1.11-4.76]	Affymetrix, Illumina [NR] (imputed)	N
1175	chr6	77431030	77431031	rs7752317	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	6q14.1	intergenic	rs7752317-?	NR	4E-6		0.157	[0.086-0.228] unit decrease	Illumina [at least 13000000] (imputed)	N
1176	chr6	77521359	77521360	rs144671596	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4+ CD8dim T cell %lymphocyte	3,668 Sardinian (founder/genetic isolate) ancestry individuals	NA	6q14.1		rs144671596-T	0.00911	4E-8		0.7459	[0.48-1.01] unit decrease	Illumina [18430788] (imputed)	N
1176	chr6	77521359	77521360	rs144671596	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4+ CD8dim T cell %leukocyte	3,668 Sardinian (founder/genetic isolate) ancestry individuals	NA	6q14.1		rs144671596-T	0.00911	3E-8		0.7524	[0.49-1.02] unit decrease	Illumina [18430788] (imputed)	N
1176	chr6	77573143	77573144	rs56031646	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (negative Marder score)	1,390 European ancestry cases	NA	6q14.1		rs56031646-T	NR	7E-6	(GLM)	3.4102	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
1177	chr6	77696791	77696792	rs323237	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	6q14.1	NR	rs323237-?	NR	1E-7				Affymetrix [NR]	N
1177	chr6	77710315	77710316	rs34613202	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	6q14.1		rs34613202-?	NR	3E-25				NR [~ 8900000] (imputed)	N
1178	chr6	77789807	77789808	rs7738636	22076464	Ellinghaus E	2011-11-11	Leukemia	Identification of germline susceptibility loci in ETV6-RUNX1-rearranged childhood acute lymphoblastic leukemia.	Acute lymphoblastic leukemia (childhood)	419 European ancestry ETV6-RUNX1 positive cases, 474 European ancestry controls	951 European ancestry ETV6-RUNX1 positive cases, 326 European ancestry ETV6-RUNX1 negative cases, 3,061 European ancestry controls	6q14.1	intergenic	rs7738636-A	0.76	6E-6		1.2658228	[1.15-1.41]	Affymetrix [355750]	N
1179	chr6	77877446	77877447	rs11752111	30705256	Koshimizu H	2019-01-31	Transl Psychiatry	Genome-wide association study identifies a novel locus associated with psychological distress in the Japanese population.	Psychological distress	3,981 Japanese ancestry cases, 6,349 Japaneses ancestry controls	NA	6q14.1	HTR1B	rs11752111-C	0.3062	5E-6		1.1566043	[1.08-1.25]	Illumina [8567708] (imputed)	N
1179	chr6	77943056	77943057	rs10806089	33597122	Verbitsky M	2021-02-17	J Am Soc Nephrol	Copy Number Variant Analysis and Genome-wide Association Study Identify Loci with Large Effect for Vesicoureteral Reflux.	Vesicoureteral reflux	1,395 European ancestry cases, 5,366 European ancestry controls	NA	6q14.1	NR	rs10806089-C	0.3375	4E-9	(recessive, male)	2.7450519	[1.96063421503208-3.84330241148564]	Affymetrix, Illumina [6131010] (imputed)	N
1179	chr6	77956815	77956816	rs1418591	33235445	Lee YJ	2020-11-17	Int J Chron Obstruct Pulmon Dis	A Genome-Wide Association Study in Early COPD: Identification of One Major Susceptibility Loci.	Early chronic obstructive pulmonary disease in never smokers	38 Korean ancestry cases, 1,778 Korean ancestry controls	NA	6q14.1	HTR1B	rs1418591-?	NR	1E-6	(PS matching analysis)	2.94	NR	Affymetrix [345072]	N
1180	chr6	78040456	78040457	rs139952245	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA	6q14.1	NR	rs139952245-?	NR	7E-7		0.3973	[0.24-0.55] unit decrease	Illumina [at least 560000] (imputed)	N
1180	chr6	78059350	78059351	rs2226150	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Time-dependent creatinine clearance change response to tenofovir treatment in HIV infection (time and treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	6q14.1	NR	rs2226150-?		2E-6	(Hispanic)			Illumina [~ 5140000] (imputed)	N
1180	chr6	78059350	78059351	rs2226150	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Time-dependent creatinine clearance change response to tenofovir treatment in HIV infection (time and treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	6q14.1	NR	rs2226150-?		1E-6	(Hispanic)			Illumina [~ 5140000] (imputed)	N
1180	chr6	78059350	78059351	rs2226150	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	6-month creatinine clearance change response to tenofovir treatment in HIV infection (treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	6q14.1	NR	rs2226150-?		7E-7	(Hispanic)			Illumina [~ 5140000] (imputed)	N
1180	chr6	78059350	78059351	rs2226150	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	6-month creatinine clearance change response to tenofovir treatment in HIV infection (treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	6q14.1	NR	rs2226150-?		1E-6	(Hispanic)			Illumina [~ 5140000] (imputed)	N
1180	chr6	78060980	78060981	rs6902991	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Time-dependent creatinine clearance change response to tenofovir treatment in HIV infection (time and treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	6q14.1	NR	rs6902991-?		6E-6	(Hispanic)			Illumina [~ 5140000] (imputed)	N
1180	chr6	78060980	78060981	rs6902991	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	6-month creatinine clearance change response to tenofovir treatment in HIV infection (treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	6q14.1	NR	rs6902991-?		4E-6	(Hispanic)			Illumina [~ 5140000] (imputed)	N
1180	chr6	78062610	78062611	rs9361224	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	6-month creatinine clearance change response to tenofovir treatment in HIV infection (treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	6q14.1	NR	rs9361224-?		5E-6	(Hispanic)			Illumina [~ 5140000] (imputed)	N
1180	chr6	78074476	78074477	rs1935737	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Time-dependent creatinine clearance change response to tenofovir treatment in HIV infection (time and treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	6q14.1	NR	rs1935737-?		5E-6	(Hispanic)			Illumina [~ 5140000] (imputed)	N
1180	chr6	78074476	78074477	rs1935737	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	6-month creatinine clearance change response to tenofovir treatment in HIV infection (treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	6q14.1	NR	rs1935737-?		3E-6	(Hispanic)			Illumina [~ 5140000] (imputed)	N
1180	chr6	78083970	78083971	rs1342634	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Time-dependent creatinine clearance change response to tenofovir treatment in HIV infection (time and treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	6q14.1	NR	rs1342634-?		5E-6	(Hispanic)			Illumina [~ 5140000] (imputed)	N
1180	chr6	78083970	78083971	rs1342634	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	6-month creatinine clearance change response to tenofovir treatment in HIV infection (treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	6q14.1	NR	rs1342634-?		4E-6	(Hispanic)			Illumina [~ 5140000] (imputed)	N
1180	chr6	78085185	78085186	rs9341664	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Time-dependent creatinine clearance change response to tenofovir treatment in HIV infection (time and treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	6q14.1	NR	rs9341664-?		1E-6	(Hispanic)			Illumina [~ 5140000] (imputed)	N
1180	chr6	78085185	78085186	rs9341664	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	6-month creatinine clearance change response to tenofovir treatment in HIV infection (treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	6q14.1	NR	rs9341664-?		1E-6	(Hispanic)			Illumina [~ 5140000] (imputed)	N
1180	chr6	78098652	78098653	rs1936166	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Parasitemia in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	6q14.1	NR	rs1936166-?	NR	9E-7				Affymetrix [5486770] (imputed)	N
1180	chr6	78099694	78099695	rs1592216	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Time-dependent creatinine clearance change response to tenofovir treatment in HIV infection (time and treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	6q14.1	NR	rs1592216-?		3E-6	(Hispanic)			Illumina [~ 5140000] (imputed)	N
1180	chr6	78099694	78099695	rs1592216	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	6-month creatinine clearance change response to tenofovir treatment in HIV infection (treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	6q14.1	NR	rs1592216-?		3E-6	(Hispanic)			Illumina [~ 5140000] (imputed)	N
1181	chr6	78171123	78171124	rs13212041	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6q14.1		rs13212041-T	0.7978	7E-9		0.0101	[0.0066-0.0136] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1181	chr6	78171123	78171124	rs13212041	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6q14.1	Intergenic	rs13212041-T	0.7978	4E-12	(MTAG)	0.0113	[0.0082-0.0144] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1181	chr6	78171123	78171124	rs13212041	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	6q14.1	Intergenic	rs13212041-T	0.7967	1E-9	(MTAG)	0.0173	[0.012-0.023] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1181	chr6	78171940	78171941	rs6297	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	6q14.1	Intergenic	rs6297-T	0.8576	6E-13	(MTAG)	0.0184	[0.013-0.023] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1181	chr6	78171940	78171941	rs6297	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	6q14.1	Intergenic	rs6297-T	0.8572	5E-15	(MTAG)	0.0185	[0.014-0.023] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1181	chr6	78186433	78186434	rs12173930	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	6q14.1	Intergenic	rs12173930-C	0.8601	4E-10		0.0176	[0.012-0.023] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1181	chr6	78203381	78203382	rs7748725	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	6q14.1	Intergenic	rs7748725-G	0.8563	5E-9		0.0189	[0.013-0.025] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1182	chr6	78325121	78325122	rs9361254	28763065	Xia K	2017-08-01	Transl Psychiatry	Genome-wide association analysis identifies common variants influencing infant brain volumes.	Brain volume in infants (white matter)	295 European, African American, Asian, Native American and other admixed ancestry infants, 17 European, African American, Asian, Native American and other admixed ancestry sibling pairs, 116 European, African American, Asian, Native American and other admixed ancestry twin pairs.	NA	6q14.1	MEI4, HTR1B	rs9361254-G	NR	9E-7		1.77	percent decrease	Affymetrix [8762422] (imputed)	N
1182	chr6	78337720	78337721	rs59972560	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	6q14.1	Intergenic	rs59972560-G	0.8729	1E-8		0.0167	[0.011-0.022] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1186	chr6	78784795	78784796	rs16889666	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	6q14.1	NR	rs16889666-?	NR	3E-13				Affymetrix [NR]	N
1186	chr6	78846990	78846991	rs113535228	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Tissue factor levels	21,758 European ancestry individuals	9,173 individuals	6q14.1		rs113535228-T	0.0078	7E-7		0.384	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1187	chr6	79024619	79024620	rs117005296	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Deep white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	6q14.1	intergenic	rs117005296-A	0.0049	4E-6		0.305	[0.18-0.43] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1188	chr6	79167365	79167366	rs742715	32107650	Liu L	2020-02-27	Clin Transl Med	A trans-ethnic two-stage polygenetic scoring analysis detects genetic correlation between osteoporosis and schizophrenia.	Osteoporosis-related phenotypes (MTAG)	1,627 Han Chinese ancestry individuals with osteoporosis-related bone measurements, 1,475 Han Chinese ancestry schizophrenia cases, 1,022 Han Chinese ancestry schizophrenia controls	NA	6q14.1	LOC105377865	rs742715-?	NR	9E-7	(ulna and radius area MTAG)	0.18	[NR] unit decrease	Affymetrix [NR]	N
1189	chr6	79204959	79204960	rs2321443	32439431	Simard M	2020-05-19	J Allergy Clin Immunol	Polygenic risk score for atopic dermatitis in the Canadian population.	Atopic dermatitis (moderate to severe)	222 South East Asian ancestry, East Asian ancestry, South Asian ancestry, African American or Afro-Caribbean, European ancestry, Greater Middle Eastern (Middle Eastern, North African or Persian) cases, 2,466 Greater Middle Eastern (Middle Eastern, North African or Persian), Hispanic or Latin American, NR moderate to severe atopic dermatitis cases, 2,466 South East Asian ancestry, East Asian ancestry, South Asian ancestry, African American or Afro-Caribbean, European ancestry, Greater Middle Eastern (Middle Eastern, North African or Persian) cases, 2,466 Greater Middle Eastern (Middle Eastern, North African or Persian), Hispanic or Latin American, NR controls without moderate to severe atopic dermatitis	NA	6q14.1		rs2321443-C	NR	3E-10	(additive)	0.706	[0.485-0.926] unit decrease	Illumina [5894709] (imputed)	N
1189	chr6	79212956	79212957	rs4632856	32635940	Nudel R	2020-07-07	BMC Neurosci	Quantitative genome-wide association analyses of receptive language in the Danish High Risk and Resilience Study.	Parent of origin effect on receptive language ability (paternal)	400 European ancestry children	NA	6q14.1	intergenic	rs4632856-A	NR	4E-6		15.46	NR unit decrease	Illumina [up to 299604]	N
1190	chr6	79316229	79316230	rs10806133	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6q14.1		rs10806133-T	0.5495	3E-8	(conditional-joint)	0.0079	[0.0052-0.0106] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1190	chr6	79318287	79318288	rs1995650	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (father's age at death or father's attained age)	up to 699,000 European ancestry individuals	NA	6q14.1	NR	rs1995650-G	NR	4E-6				Illumina [458865]	N
1190	chr6	79326616	79326617	rs16890234	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Rapid automised naming of pictures	2,562 European ancestry individuals	NA	6q14.1	Intergenic	rs16890234-G	0.881766857	7E-6		0.226378	[0.13-0.33] unit decrease	Illumina [6952813] (imputed)	N
1190	chr6	79349891	79349892	rs236852	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	Waist circumference	291,107 British ancestry individuals	NA	6q14.1	RP11-207F8.1	rs236852-C	0.49784401	2E-6		0.148611	[0.087-0.21] unit decrease	Affymetrix [9463307] (imputed)	N
1190	chr6	79354354	79354355	rs186542490	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		6q14.1	Intergenic	rs186542490-A	0.006	8E-6	(liability model)	0.6	[0.35-0.85] unit increase	NR [19725427] (imputed)	N
1190	chr6	79424432	79424433	rs9352613	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	6q14.1	NR	rs9352613-?	NR	7E-7				Affymetrix [NR]	N
1191	chr6	79455281	79455282	rs9343798	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (father's age at death or father's attained age)	up to 699,000 European ancestry individuals	NA	6q14.1	NR	rs9343798-A		1E-6				Illumina [458865]	N
1191	chr6	79462622	79462623	rs9352633	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	6q14.1	NR	rs9352633-?	NR	5E-6		0.123862	[0.071-0.177] unit increase	NR [13958389] (imputed)	N
1191	chr6	79483245	79483246	rs1507151	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	6q14.1		rs1507151-?	NR	3E-11				NR [~ 8900000] (imputed)	N
1191	chr6	79484385	79484386	rs1507153	24097067	Lessard CJ	2013-11-01	Nat Genet	Variants at multiple loci implicated in both innate and adaptive immune responses are associated with Sjogren's syndrome.	Sjogren's syndrome	395 European ancestry cases, 1,975 European ancestry controls	1,158 European ancestry cases, 3,071 European ancestry controls	6q14.1	IRAK1BP1	rs1507153-A	0.36	7E-7		1.26	[1.11-1.43]	Illumina [648937]	N
1191	chr6	79510993	79510994	rs10943588	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6q14.1		rs10943588-A	0.6187	1E-8		0.0084	[0.0055-0.0113] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1191	chr6	79510993	79510994	rs10943588	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6q14.1	Intergenic	rs10943588-A	0.6187	6E-12	(MTAG)	0.0094	[0.0067-0.0121] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1191	chr6	79536454	79536455	rs1567168	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	6q14.1	MEI4, IRAK1BP1	rs1567168-?	NR	4E-11		0.423	[0.29-0.56] unit decrease	Affymetrix [11100000] (imputed)	N
1191	chr6	79538790	79538791	rs12194642	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	6q14.1	Intergenic	rs12194642-A	0.3815	3E-11	(MTAG)	0.0157	[0.011-0.02] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1191	chr6	79538790	79538791	rs12194642	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption interaction (2df test)	63,607 European ancestry drinkers, 10,193 African American or Afro-Caribbean drinkers, 2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,492 European ancestry non-drinkers, 11,223 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,058 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	6q14.1	IRAK1BP1	rs12194642-A	0.38	2E-16	(EA, Hispanic)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1191	chr6	79539632	79539632	rs10639111	33568662	Dashti HS	2021-02-10	Nat Commun	Genetic determinants of daytime napping and effects on cardiometabolic health.	Daytime nap	452,633 European ancestry individuals	541,333 European ancestry individuals	6q14.1	IRAK1BP1, MEI4	rs10639111-TGAGA		3E-6		0.0049	[0.0027-0.0071] unit increase	Affymetrix [13304133] (imputed)	N
1191	chr6	79543491	79543492	rs6912683	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	6q14.1		rs6912683-A	NR	2E-13		0.014	[0.01-0.018] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1191	chr6	79543491	79543492	rs6912683	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	6q14.1		rs6912683-A	NR	5E-8		0.0271	[0.017-0.037] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1191	chr6	79554192	79554193	rs6926537	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	6q14.1		rs6926537-?	NR	7E-15				NR [~ 8900000] (imputed)	N
1191	chr6	79556165	79556166	rs16890334	24165912	He J	2013-10-28	Circ Cardiovasc Genet	Genome-wide association study identifies 8 novel loci associated with blood pressure responses to interventions in Han Chinese.	Blood pressure measurement (low sodium intervention)	1,850 Han Chinese ancestry individuals	660 Han Chinese ancestry individuals	6q14.1	IRAK1BP1	rs16890334-C	0.06	2E-7	(SBP, during intervention)	4.32	[2.67-5.97] mmHg decrease	Affymetrix [2216774] (imputed)	N
1191	chr6	79556165	79556166	rs16890334	24165912	He J	2013-10-28	Circ Cardiovasc Genet	Genome-wide association study identifies 8 novel loci associated with blood pressure responses to interventions in Han Chinese.	Blood pressure measurement (high sodium intervention)	1,840 Han Chinese ancestry individuals	659 Han Chinese ancestry individuals	6q14.1	IRAK1BP1	rs16890334-C	0.06	4E-9	(SBP, during intervention)	5.43	[3.63-7.23] mmHg decrease	Affymetrix [2216774] (imputed)	N
1191	chr6	79556165	79556166	rs16890334	24165912	He J	2013-10-28	Circ Cardiovasc Genet	Genome-wide association study identifies 8 novel loci associated with blood pressure responses to interventions in Han Chinese.	Blood pressure measurement (high sodium intervention)	1,840 Han Chinese ancestry individuals	659 Han Chinese ancestry individuals	6q14.1	IRAK1BP1	rs16890334-C	0.06	2E-6	(MAP, during intervention)	3.39	[1.98-4.80] mmHg decrease	Affymetrix [2216774] (imputed)	N
1191	chr6	79556165	79556166	rs16890334	24165912	He J	2013-10-28	Circ Cardiovasc Genet	Genome-wide association study identifies 8 novel loci associated with blood pressure responses to interventions in Han Chinese.	Blood pressure measurement (high sodium and potassium intervention)	1,836 Han Chinese ancestry individuals	654 Han Chinese ancestry individuals	6q14.1	IRAK1BP1	rs16890334-C	0.06	5E-7	(MAP, during intervention)	3.2	[1.95-4.45] mmHg decrease	Affymetrix [2216774] (imputed)	N
1191	chr6	79556165	79556166	rs16890334	24165912	He J	2013-10-28	Circ Cardiovasc Genet	Genome-wide association study identifies 8 novel loci associated with blood pressure responses to interventions in Han Chinese.	Blood pressure measurement (high sodium and potassium intervention)	1,836 Han Chinese ancestry individuals	654 Han Chinese ancestry individuals	6q14.1	IRAK1BP1	rs16890334-C	0.06	1E-10	(SBP, during intervention)	5.38	[3.73-7.03] mmHg decrease	Affymetrix [2216774] (imputed)	N
1192	chr6	79575290	79575291	rs10943595	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	6q14.1		rs10943595-G	NR	4E-16		0.0166	[0.013-0.021] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1192	chr6	79585226	79585230	rs376497047	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	6q14.1		rs376497047-T	NR	7E-16		0.0158	[0.012-0.02] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
1192	chr6	79599036	79599037	rs140587050	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		6q14.1	IRAK1BP1	rs140587050-C	0.995	5E-6	(liability model)	0.63	[0.36-0.9] unit decrease	NR [19725427] (imputed)	N
1192	chr6	79617521	79617522	rs6915030	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	6q14.1	NR	rs6915030-T	0.107067	2E-14		0.023787	[0.018-0.03] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1192	chr6	79655476	79655477	rs10943605	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Mean arterial pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	NA	6q14.1	PHIP	rs10943605-A	0.461775888076835	2E-6		0.21725878	[0.13-0.31] unit increase	Illumina [247039]	N
1192	chr6	79655476	79655477	rs10943605	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Diastolic blood pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	154,543 European ancestry individuals, 26,183 South Asian ancestry individuals	6q14.1	PHIP	rs10943605-A	0.462	3E-9		0.16	[0.1-0.22] unit increase	Illumina [247039]	N
1192	chr6	79674928	79674929	rs10943608	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (father's age at death or father's attained age)	up to 699,000 European ancestry individuals	NA	6q14.1	NR	rs10943608-A		9E-6				Illumina [458865]	N
1192	chr6	79674928	79674929	rs10943608	24097067	Lessard CJ	2013-11-01	Nat Genet	Variants at multiple loci implicated in both innate and adaptive immune responses are associated with Sjogren's syndrome.	Sjogren's syndrome	395 European ancestry cases, 1,975 European ancestry controls	1,158 European ancestry cases, 3,071 European ancestry controls	6q14.1	PHIP	rs10943608-C	0.37	6E-6		1.23	[1.08-1.40]	Illumina [648937]	N
1193	chr6	79701971	79701972	rs6454092	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	6q14.1	PHIP	rs6454092-G	0.47	8E-12		0.2277	[0.16-0.29] mmHg increase	Affymetrix [NR] (imputed)	N
1193	chr6	79702734	79702735	rs12208915	28394258	Wild PS	2017-04-10	J Clin Invest	Large-scale genome-wide analysis identifies genetic variants associated with cardiac structure and function.	Left atrial antero-posterior diameter	30,201 European ancestry individuals	NA	6q14.1	NR	rs12208915-A	0.1171	3E-6		0.0319	[0.019-0.045] unit decrease	Affymetrix, Illumina [at least 283291] (imputed)	N
1193	chr6	79744867	79744868	rs9343861	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	6q14.1	Intergenic	rs9343861-A	0.3866	1E-10	(MTAG)	0.0118	[0.0083-0.0153] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1193	chr6	79753393	79753394	rs2050663	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	6q14.1	PHIP	rs2050663-T		4E-9		0.229	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1193	chr6	79753393	79753394	rs2050663	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	6q14.1	PHIP	rs2050663-T		2E-13		0.174	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1193	chr6	79761885	79761886	rs67890480	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q14.1	NR	rs67890480-T	0.889645	3E-12				Affymetrix, Illumina [17210439] (imputed)	N
1193	chr6	79779766	79779767	rs10455120	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	6q14.1	Intergenic	rs10455120-T	0.6805	5E-8		0.0114	[0.0073-0.0155] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1193	chr6	79779766	79779767	rs10455120	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	6q14.1	Intergenic	rs10455120-T	0.6811	5E-13	(MTAG)	0.0128	[0.0093-0.0163] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1194	chr6	79822923	79822924	rs9443645	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	6q14.1	PHIP	rs9443645-T	NR	6E-10		0.018057467	[0.012-0.024] unit decrease	Affymetrix [NR]	N
1194	chr6	79823370	79823371	rs12208017	31806883	de Las Fuentes L	2019-12-06	Pharmacogenomics J	Genome-wide meta-analysis of variant-by-diuretic interactions as modulators of lipid traits in persons of European and African ancestry.	LDL cholesterol levels x loop diuretics use interaction	2,117 European ancestry exposed individuals, 30,715 European ancestry unexposed individuals, 784 African American and African ancestry exposed individuals, 5,218 African American and African ancestry unexposed individuals	NA		IRAK1BP1, HMGN3, PHIP	rs12208017-?	NR	4E-8	(African)	0.8105	[0.52-1.1] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1194	chr6	79826147	79826148	rs9361491	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	6q14.1	PHIP	rs9361491-T	NR	6E-10		0.018112702	[0.012-0.024] unit increase	Affymetrix [NR]	N
1194	chr6	79855430	79855431	rs6904674	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (father's age at death or father's attained age)	up to 699,000 European ancestry individuals	NA	6q14.1	NR	rs6904674-A		9E-6				Illumina [458865]	N
1194	chr6	79858984	79858985	rs72890085	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Rapid automised naming of pictures	2,562 European ancestry individuals	NA	6q14.1	Intergenic	rs72890085-A	0.905058714	4E-6		0.263575	[0.15-0.37] unit decrease	Illumina [6952813] (imputed)	N
1196	chr6	80113594	80113595	rs196670	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Parasitemia in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	6q14.1	NR	rs196670-?	NR	3E-6				Affymetrix [5486770] (imputed)	N
1196	chr6	80147186	80147187	rs196701	25524916	Palmer ND	2014-12-18	Diabetes	Genetic Variants Associated With Quantitative Glucose Homeostasis Traits Translate to Type 2 Diabetes in Mexican Americans: The GUARDIAN (Genetics Underlying Diabetes in Hispanics) Consortium.	Glucose homeostasis traits	up to 4,176 Mexican American individuals	NA	6q14.1	HMGN3, LCA5	rs196701-?		1E-6	(SI)	0.35	[0.15-0.55] unit decrease	Illumina [693128]	N
1196	chr6	80156258	80156259	rs12204683	23509613	Kamboh MI	2013-02-24	Autoimmune Dis	Genome-wide association study of antiphospholipid antibodies.	Presence of antiphospholipid antibodies	183 European ancestry ACL-positive cases, 487 European ancestry ACL-negative controls, 127 European ancestry LAC-positive cases, 581 European ancestry LAC-negative controls, 136 European ancestry Anti-B2GPI-positive cases, 360 European ancestry Anti-B2GPI-negative controls	NA	6q14.1	LCA5	rs12204683-?	0.2378	7E-6	(ACL)	1.877	[NR]	Affymetrix [906600]	N
1197	chr6	80257280	80257281	rs3747767	21302353	Perroud N	2010-12-28	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of hoarding traits.	Hoarding	3,304 European ancestry individuals	NA	6q14.1	LCA5	rs3747767-A	0.03	7E-7		1.81	[NR] unit increase	Illumina [1517033] (imputed)	N
1197	chr6	80310225	80310226	rs6920332	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	6q14.1		rs6920332-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1197	chr6	80322280	80322281	rs6917843	25378659	Lemaitre RN	2014-11-06	J Lipid Res	Genetic loci associated with circulating levels of very long-chain saturated fatty acids.	Very long-chain saturated fatty acid levels (fatty acid 20:0)	10,129 European ancestry individuals	NA	6q14.1	SH3BGRL2	rs6917843-A	NR	4E-6		4.621	[NR] Z score decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1197	chr6	80328283	80328284	rs113347795	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Firmicutes E abundance in stool	5,959 Finnish ancestry individuals	NA	6q14.1		rs113347795-G	0.234814	6E-9		0.0203778	[0.014-0.027] unit decrease	Illumina [7980478] (imputed)	N
1198	chr6	80410955	80410956	rs2295015	26112879	Rudkowska I	2015-06-20	J Nutrigenet Nutrigenomics	Interaction between Common Genetic Variants and Total Fat Intake on Low-Density Lipoprotein Peak Particle Diameter: A Genome-Wide Association Study.	LDL peak particle diameter (total fat intake interaction)	541 European ancestry individuals	NA	6q14.1	SH3BGRL2	rs2295015-A	0.96	5E-6		0.07	[0.05-0.09] unit decrease	Illumina [1632371] (imputed)	N
1198	chr6	80466123	80466124	rs6925255	22773346	Edwards DR	2012-07-07	Age (Dordr)	Linkage and association of successful aging to the 6q25 region in large Amish kindreds.	Aging	263 Amish individuals aged 80 years or older	NA	6q14.1	SH3BGRL2, ELOVL4	rs6925255-?	0.49	1E-6				Affymetrix [630309]	N
1199	chr6	80533186	80533187	rs1321847	23669352	Graff M	2013-05-12	Hum Mol Genet	Genome-wide analysis of BMI in adolescents and young adults reveals additional insight into the effects of genetic loci over the life course.	Body mass index	Up to 13,627 European ancestry individuals	Up to 16,253 European ancestry individuals	6q14.1	ELOVL4	rs1321847-A	0.09	2E-6		0.07	[0.041-0.099] unit increase	Affymetrix, Illumina [557887] (imputed)	N
1199	chr6	80561018	80561019	rs117543859	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6q14.1	RP1-92C4.1	rs117543859-A	NR	1E-10		0.0537041	[0.037-0.07] unit increase	Affymetrix [321114] (imputed)	N
1199	chr6	80562437	80562438	rs12525534	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6q14.1	NR	rs12525534-?	NR	3E-13				Affymetrix [~ 8270000] (imputed)	N
1199	chr6	80563140	80563141	rs9448840	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6q14.1		rs9448840-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1199	chr6	80564835	80564836	rs346291	20522523	Kasperaviciute D	2010-06-03	Brain	Common genetic variation and susceptibility to partial epilepsies: a genome-wide association study.	Partial epilepsies	Up to 3,445 European ancestry cases, 6,935 European ancestry controls	NA	6q14.1	AL132875.2, SH3BGRL2, ELOVL4	rs346291-?	0.634	3E-7		1.2	[1.12-1.30]	Illumina [528745]	N
1199	chr6	80575141	80575142	rs55768285	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6q14.1	NR	rs55768285-?	NR	6E-13				Affymetrix [~ 8270000] (imputed)	N
1199	chr6	80588160	80588161	rs6919854	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6q14.1	RP1-92C4.2	rs6919854-A	NR	7E-9		0.0168298	[0.011-0.023] unit decrease	Affymetrix [321114] (imputed)	N
1199	chr6	80588160	80588161	rs6919854	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Daytime sleep phenotypes	874 European ancestry individuals	NA	6q14.1	RP1-92C4.2, ELOVL4, GAPDHP63, RPL35AP18	rs6919854-T	NR	7E-6	(daytime napping duration, weekdays)	0.07633	[0.043-0.11] unit increase	Affymetrix [7141204] (imputed)	N
1199	chr6	80591262	80591263	rs2117445	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Daytime sleep phenotypes	874 European ancestry individuals	NA	6q14.1	ELOVL4, GAPDHP63, RPL35AP18, TTK	rs2117445-G	NR	4E-6	(daytime napping, weekdays)	0.5066	[0.29-0.72] unit increase	Affymetrix [7141204] (imputed)	N
1200	chr6	80617658	80617659	rs1849275	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6q14.1	NR	rs1849275-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
1200	chr6	80620934	80620935	rs74783274	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6q14.1	ELOVL4	rs74783274-C	NR	5E-9		0.0496453	[0.033-0.066] unit increase	Affymetrix [321016] (imputed)	N
1200	chr6	80639026	80639027	rs76567515	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6q14.1	NR	rs76567515-?	NR	2E-12				Affymetrix [~ 8270000] (imputed)	N
1200	chr6	80639026	80639027	rs76567515	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	6q14.1		rs76567515-?	NR	3E-10				NR [~ 8900000] (imputed)	N
1200	chr6	80647621	80647622	rs16891339	28166215	Hobbs BD	2017-02-06	Nat Genet	Genetic loci associated with chronic obstructive pulmonary disease overlap with loci for lung function and pulmonary fibrosis.	Chronic obstructive pulmonary disease	11,157 European ancestry cases, 36,699 European ancestry controls, 1,142 African American cases, 2,380 African American controls, 199 Korean ancestry cases, 6,741 Korean ancestry controls, 52 Hispanic cases, 548 Hispanic controls.	12,051 European ancestry cases, 11,111 European ancestry controls, 153 Korean ancestry cases, 205 Korean ancestry controls.	6q14.1	ELOVL4	rs16891339-G	0.039	4E-6		1.102	[0.993-1.224] (Stage 1 meta-analysis)	Affymetrix, Illumina [NR] (imputed)	N
1200	chr6	80697317	80697318	rs4706108	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	6q14.1	ELOVL4, TTK	rs4706108-?	NR	6E-10		0.4258	[0.28-0.57] unit increase	Affymetrix [11100000] (imputed)	N
1200	chr6	80709828	80709829	rs9352788	25865494	Chan Y	2015-04-09	Am J Hum Genet	Genome-wide Analysis of Body Proportion Classifies Height-Associated Variants by Mechanism of Action and Implicates Genes Important for Skeletal Development.	Sitting height ratio	3,545 African American individuals, 12,965 European ancestry women, 8,625 European ancestry men	NA	6q14.1	NR	rs9352788-T	0.863	7E-7	(EA)	0.082	[0.049-0.115] unit increase	Affymetrix, Illumina [up to 10250422] (imputed)	N
1201	chr6	80796147	80796148	rs12526331	30596066	Kong LL	2018-11-01	Ann Transl Med	Genome-wide association study identifies RBFOX1 locus influencing brain glucose metabolism.	Brain glucose metabolism (fluorodeoxyglucose uptake)	37 European ancestry Alzheimer's disease cases, 126 European ancestry individuals with mild cognitive impairment, 59 European ancestry controls	NA	6q14.1	NR	rs12526331-?	NR	2E-7				Illumina [319792]	N
1201	chr6	80810012	80810013	rs7453746	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6q14.1	BCKDHB	rs7453746-G	NR	2E-8		0.0158417	[0.01-0.021] unit decrease	Affymetrix [321114] (imputed)	N
1201	chr6	80817275	80817275	rs71727964	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6q14.1	BCKDHB	rs71727964-CAT	NR	2E-8		0.0244279	[0.016-0.033] unit increase	Affymetrix [319769] (imputed)	N
1201	chr6	80818530	80818531	rs7753695	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	NA	6q14.1	BCKDHB	rs7753695-C	0.5614	5E-9		0.1031	[0.069-0.138] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1201	chr6	80837252	80837253	rs9448894	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	6q14.1		rs9448894-T	NR	5E-9		0.0119	[0.008-0.0158] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1201	chr6	80845988	80845989	rs2322633	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	6q14.1	BCKDHB	rs2322633-T	0.5	3E-9		1.12	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
1201	chr6	80846546	80846547	rs116931912	30098192	Shaaban S	2018-08-01	Invest Ophthalmol Vis Sci	Genome-Wide Association Study Identifies a Susceptibility Locus for Comitant Esotropia and Suggests a Parent-of-Origin Effect.	Amblyopia	386 European ancestry cases, 1,700 European ancestry controls	45 European ancestry cases, 180 European ancestry controls	6q14.1	NR	rs116931912-T	NR	2E-6		3.35	NR	Illumina [6470615] (imputed)	N
1201	chr6	80850813	80850814	rs12209419	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6q14.1	BCKDHB	rs12209419-C	NR	5E-9		0.017769	[0.012-0.024] unit decrease	Affymetrix [321114] (imputed)	N
1201	chr6	80850813	80850814	rs12209419	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6q14.1		rs12209419-?	NR	7E-78				NR [~ 8900000] (imputed)	N
1201	chr6	80854469	80854470	rs10080237	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6q14.1	BCKDHB	rs10080237-T	0.5627	5E-8		0.0219	[0.014-0.03] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1201	chr6	80854469	80854470	rs10080237	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6q14.1	BCKDHB	rs10080237-T	0.5627	4E-6	(women)	0.0293	[0.017-0.042] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1201	chr6	80854469	80854470	rs10080237	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6q14.1	BCKDHB	rs10080237-T	0.5627	4E-7		0.0232	[0.014-0.032] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1201	chr6	80854469	80854470	rs10080237	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6q14.1	BCKDHB	rs10080237-?	0.5627	4E-7				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1202	chr6	80880137	80880138	rs6931421	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	6q14.1	BCKDHB	rs6931421-T	0.6776	2E-43		0.0279	[0.024-0.032] unit increase	Affymetrix [18391927] (imputed)	N
1202	chr6	80880137	80880138	rs6931421	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	6q14.1	NR	rs6931421-?	NR	3E-10	(female)	0.16188	[0.11-0.21] unit decrease	Affymetrix [7794483] (imputed)	N
1202	chr6	80880137	80880138	rs6931421	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	6q14.1	NR	rs6931421-?	NR	2E-10		0.15071	[0.1-0.2] unit decrease	Affymetrix [7794483] (imputed)	N
1202	chr6	80880137	80880138	rs6931421	25865494	Chan Y	2015-04-09	Am J Hum Genet	Genome-wide Analysis of Body Proportion Classifies Height-Associated Variants by Mechanism of Action and Implicates Genes Important for Skeletal Development.	Sitting height ratio	3,545 African American individuals, 12,965 European ancestry women, 8,625 European ancestry men	NA	6q14.1	BCKDHB	rs6931421-T	0.678	1E-8	(EA)	0.059	[0.039-0.079] unit increase	Affymetrix, Illumina [up to 10250422] (imputed)	N
1202	chr6	80901837	80901838	rs72892431	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6q14.1	NR	rs72892431-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
1202	chr6	80905388	80905389	rs12662365	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	6q14.1		rs12662365-A	NR	3E-53		0.0206	[0.018-0.023] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1202	chr6	80905388	80905389	rs12662365	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6q14.1	BCKDHB	rs12662365-A	NR	2E-8		0.0187215	[0.012-0.025] unit decrease	Affymetrix [323858] (imputed)	N
1202	chr6	80905388	80905389	rs12662365	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6q14.1	BCKDHB	rs12662365-A	NR	2E-9		0.0202116	[0.014-0.027] unit decrease	Affymetrix [127266] (imputed)	N
1202	chr6	80905388	80905389	rs12662365	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6q14.1	BCKDHB	rs12662365-A	NR	3E-9		0.0197312	[0.013-0.026] unit decrease	Affymetrix [321114] (imputed)	N
1202	chr6	80905388	80905389	rs12662365	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	6q14.1	NR	rs12662365-A	0.32127300000000003	8E-9		0.00542453	[0.0037-0.0072] unit increase	Affymetrix [16582909] (imputed)	N
1202	chr6	80916966	80916967	rs12527712	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	6q14.1	NA	rs12527712-T	0.0882	3E-18		0.0284	[0.022-0.035] unit increase	NR [~ 27400000] (imputed)	N
1202	chr6	80920422	80920423	rs1324119	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6q14.1	BCKDHB	rs1324119-G	NR	2E-8		0.0240623	[0.016-0.032] unit increase	Affymetrix [319769] (imputed)	N
1202	chr6	80922113	80922114	rs112498803	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6q14.1	NR	rs112498803-?	NR	6E-11				Affymetrix [~ 8270000] (imputed)	N
1202	chr6	80922113	80922114	rs112498803	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	315,284 European ancestry male individuals	NA	6q14.1	NR	rs112498803-A	0.0792	2E-23		0.0364	[0.029-0.044] unit increase	NR [~ 27400000] (imputed)	N
1202	chr6	80922991	80922992	rs16891532	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6q14.1	NR	rs16891532-?	NR	2E-22				Affymetrix [~ 8270000] (imputed)	N
1202	chr6	80922991	80922992	rs16891532	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	6q14.1		rs16891532-?	NR	2E-23				NR [~ 8900000] (imputed)	N
1202	chr6	80922991	80922992	rs16891532	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	6q14.1	NR	rs16891532-A	0.09	4E-24		0.034	[0.027-0.041] unit increase	Affymetrix [2446094] (imputed)	N
1202	chr6	80922991	80922992	rs16891532	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	6q14.1	NR	rs16891532-A	0.09	5E-8				Affymetrix [2446094] (imputed)	N
1202	chr6	80932893	80932894	rs1324123	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	6q14.1		rs1324123-A	NR	1E-9		0.01	[0.0069-0.0131] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1202	chr6	80934117	80934117	rs113578748	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6q14.1	BCKDHB	rs113578748-CT	NR	5E-12		0.0366045	[0.026-0.047] unit increase	Affymetrix [319769] (imputed)	N
1202	chr6	80934117	80934117	rs113578748	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6q14.1	BCKDHB	rs113578748-CT	NR	5E-10		0.03694	[0.025-0.049] unit increase	Affymetrix [323858] (imputed)	N
1202	chr6	80934117	80934117	rs113578748	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6q14.1	BCKDHB	rs113578748-CT	NR	2E-12		0.0374207	[0.027-0.048] unit increase	Affymetrix [319769] (imputed)	N
1202	chr6	80934117	80934117	rs113578748	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6q14.1	BCKDHB	rs113578748-CT	NR	2E-10		0.0377395	[0.026-0.049] unit increase	Affymetrix [127266] (imputed)	N
1202	chr6	80953256	80953257	rs9341808	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6q14.1	NR	rs9341808-?	NR	5E-19				Affymetrix [~ 8270000] (imputed)	N
1202	chr6	80953256	80953257	rs9341808	31053729	Styrkarsdottir U	2019-05-03	Nat Commun	GWAS of bone size yields twelve loci that also affect height, BMD, osteoarthritis or fractures.	Spine bone size	29,059 European ancestry individuals	14,932 European ancestry individuals, 6,345 East Asian ancestry individuals	6q14.1	BCKDHB	rs9341808-C	0.471	1E-16		0.054	[0.042-0.067] unit increase	Illumina [33400000] (imputed)	N
1202	chr6	80953256	80953257	rs9341808	25865494	Chan Y	2015-04-09	Am J Hum Genet	Genome-wide Analysis of Body Proportion Classifies Height-Associated Variants by Mechanism of Action and Implicates Genes Important for Skeletal Development.	Sitting height ratio	3,545 African American individuals, 12,965 European ancestry women, 8,625 European ancestry men	NA	6q14.1	NR	rs9341808-C	0.522	2E-6	(EA)	0.046	[0.026-0.066] unit increase	Affymetrix, Illumina [up to 10250422] (imputed)	N
1202	chr6	80956145	80956146	rs1359239	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6q14.1	BCKDHB	rs1359239-A	NR	2E-12		0.0200306	[0.014-0.026] unit decrease	Affymetrix [321114] (imputed)	N
1202	chr6	80956145	80956146	rs1359239	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6q14.1	NR	rs1359239-?	NR	3E-10				Affymetrix [~ 8270000] (imputed)	N
1202	chr6	80956207	80956208	rs648831	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6q14.1	BCKDHB	rs648831-C	NR	4E-8		0.0171897	[0.011-0.023] unit decrease	Affymetrix [321114] (imputed)	N
1202	chr6	80956207	80956208	rs648831	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6q14.1	BCKDHB	rs648831-C	NR	2E-10		0.0179849	[0.012-0.024] unit decrease	Affymetrix [321016] (imputed)	N
1202	chr6	80956207	80956208	rs648831	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6q14.1	BCKDHB	rs648831-T	0.5176	2E-6		0.0301	[0.018-0.043] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1202	chr6	80956207	80956208	rs648831	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	6q14.1	BCKDHB	rs648831-T	0.503	3E-26		0.031	[0.025-0.037] unit increase	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
1202	chr6	80997341	80997342	rs9352808	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	6q14.1	NR	rs9352808-T	0.454733	7E-10		0.0418934	[0.029-0.055] unit decrease	Affymetrix [17914406] (imputed)	N
1203	chr6	81007140	81007141	rs6920239	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6q14.1	BCKDHB	rs6920239-G	NR	3E-8		0.0305461	[0.02-0.041] unit increase	Affymetrix [321169] (imputed)	N
1203	chr6	81007698	81007699	rs4706831	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Joint mobility (Beighton score)	64,143 European ancestry individuals	NA	6q14.1	BCKDHB	rs4706831-?	NR	3E-10		0.069	[0.090-0.047] unit decrease	Illumina [12039492] (imputed)	N
1203	chr6	81013470	81013471	rs74596105	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6q14.1	BCKDHB	rs74596105-G	NR	2E-9		0.0369348	[0.025-0.049] unit increase	Affymetrix [321114] (imputed)	N
1203	chr6	81019311	81019312	rs6454150	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6q14.1	BCKDHB	rs6454150-G	NR	2E-8		0.0236866	[0.015-0.032] unit increase	Affymetrix [323858] (imputed)	N
1203	chr6	81019311	81019312	rs6454150	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6q14.1	BCKDHB	rs6454150-G	NR	4E-9		0.0247289	[0.017-0.033] unit increase	Affymetrix [127266] (imputed)	N
1203	chr6	81030830	81030831	rs806851	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6q14.1	BCKDHB	rs806851-G	NR	6E-9		0.0173208	[0.011-0.023] unit increase	Affymetrix [321016] (imputed)	N
1203	chr6	81035172	81035173	rs806845	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	6q14.1		rs806845-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1203	chr6	81036868	81036869	rs74538379	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6q14.1	BCKDHB	rs74538379-G	NR	3E-10		0.050004	[0.034-0.066] unit increase	Affymetrix [321114] (imputed)	N
1203	chr6	81038920	81038921	rs1341278	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6q14.1	BCKDHB	rs1341278-G	NR	1E-8		0.034121	[0.022-0.046] unit increase	Affymetrix [321016] (imputed)	N
1203	chr6	81038920	81038921	rs1341278	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6q14.1	NR	rs1341278-?	NR	2E-23				Affymetrix [~ 8270000] (imputed)	N
1203	chr6	81041277	81041278	rs79918896	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6q14.1	BCKDHB	rs79918896-G	NR	4E-12		0.0596642	[0.043-0.077] unit increase	Affymetrix [321114] (imputed)	N
1203	chr6	81041277	81041278	rs79918896	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6q14.1	BCKDHB	rs79918896-A	0.9661	1E-7		0.0964	[0.061-0.132] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1203	chr6	81048945	81048946	rs3805859	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	6q14.1	BCKDHB	rs3805859-?	NR	1E-21		0.027440231	[0.022-0.033] unit decrease	Illumina [27896057] (imputed)	N
1203	chr6	81050235	81050236	rs9350850	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6q14.1	BCKDHB	rs9350850-C	NR	2E-12		0.0401299	[0.029-0.051] unit increase	Affymetrix [321114] (imputed)	N
1203	chr6	81050235	81050236	rs9350850	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6q14.1	BCKDHB	rs9350850-C	NR	2E-8		0.0318907	[0.021-0.043] unit increase	Affymetrix [323123] (imputed)	N
1203	chr6	81050235	81050236	rs9350850	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	6q14.1	BCKDHB	rs9350850-T	0.9204	3E-24		0.0346	[0.028-0.041] unit decrease	Affymetrix [18391927] (imputed)	N
1203	chr6	81056633	81056634	rs723588	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	6q14.1		rs723588-?	NR	5E-10				NR [~ 8900000] (imputed)	N
1203	chr6	81067414	81067415	rs74603016	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6q14.1	RP11-250B2.6	rs74603016-G	NR	8E-12		0.048336	[0.035-0.062] unit increase	Affymetrix [321114] (imputed)	N
1203	chr6	81069149	81069150	rs10943703	25865494	Chan Y	2015-04-09	Am J Hum Genet	Genome-wide Analysis of Body Proportion Classifies Height-Associated Variants by Mechanism of Action and Implicates Genes Important for Skeletal Development.	Sitting height ratio	3,545 African American individuals, 12,965 European ancestry women, 8,625 European ancestry men	NA	6q14.1	NR	rs10943703-A	0.606	2E-7	(EA)	0.055	[0.033-0.077] unit increase	Affymetrix, Illumina [up to 10250422] (imputed)	N
1203	chr6	81079114	81079115	rs9448944	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6q14.1	RPL17P25	rs9448944-G	NR	3E-8		0.015798	[0.01-0.021] unit increase	Affymetrix [319769] (imputed)	N
1203	chr6	81079114	81079115	rs9448944	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6q14.1	NR	rs9448944-?	NR	3E-12				Affymetrix [~ 8270000] (imputed)	N
1203	chr6	81094286	81094287	rs12207986	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	6q14.1		rs12207986-A	NR	2E-10		1.04	[1.03-1.05]	Affymetrix, Illumina [NR] (imputed)	N
1203	chr6	81094286	81094287	rs12207986	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6q14.1	intergenic	rs12207986-A	0.53	2E-9	(EA)	1.0309278	[1.02-1.05] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
1203	chr6	81100354	81100355	rs9361614	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6q14.1	NR	rs9361614-?	NR	4E-14				Affymetrix [~ 8270000] (imputed)	N
1203	chr6	81108675	81108676	rs4604234	27197191	Fehringer G	2016-04-20	Cancer Res	Cross-Cancer Genome-Wide Analysis of Lung, Ovary, Breast, Prostate, and Colorectal Cancer Reveals Novel Pleiotropic Associations.	Cancer	5,020 European ancestry lung cancer cases, 3,718 European ancestry lung adenocarcinoma cases, 3,422 European ancestry lung squamous cell carcinoma cases, 15,414 European ancestry colorectal cancer cases, 10,809 European ancestry breast cancer cases, 4,939 European ancestry estrogen receptor negative breast cancer cases, 1,098 European ancestry ovarian cancer cases, 2,556 European ancestry serous ovarian cancer cases, 715 European ancestry ovarian endometrioid carcinoma cases, 9,710 European ancestry prostate cancer cases, 4,450 European ancestry aggressive prostate cancer cases,  61,820 European ancestry controls	NA	6q14.1	Intergenic	rs4604234-C	NR	6E-6		1.1	[NR]	Affymetrix, Illumina [9916564] (imputed)	N
1203	chr6	81114125	81114126	rs62406467	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6q14.1	RPL17P25	rs62406467-T	NR	7E-9		0.0233426	[0.015-0.031] unit decrease	Affymetrix [321114] (imputed)	N
1203	chr6	81114125	81114126	rs62406467	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6q14.1	NR	rs62406467-?	NR	1E-10				Affymetrix [~ 8270000] (imputed)	N
1203	chr6	81114125	81114126	rs62406467	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6q14.1	NR	rs62406467-?	NR	3E-12				Affymetrix [~ 8270000] (imputed)	N
1203	chr6	81125935	81125936	rs1115232	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	6q14.1		rs1115232-?	NR	5E-8		0.00782979	[0.005-0.0106] unit decrease	NR [NR]	N
1204	chr6	81134399	81134400	rs9344000	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	6q14.1		rs9344000-A	NR	3E-9		0.0184	[0.012-0.024] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1204	chr6	81136939	81136940	rs58228181	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6q14.1	RP11-250B2.3	rs58228181-G	NR	4E-12		0.0333878	[0.024-0.043] unit increase	Affymetrix [321114] (imputed)	N
1204	chr6	81152772	81152773	rs17810023	29391396	McElroy SL	2018-02-02	Transl Psychiatry	Bipolar disorder with binge eating behavior: a genome-wide association study implicates PRR5-ARHGAP8.	Binge eating behaviour and bipolar disorder	398 European ancestry cases, 1,811 European ancestry controls	NA	6q14.1	RP11-250B2.3	rs17810023-T	0.02	9E-8		3.846154	[NR]	Affymetrix, Illumina [8000000] (imputed)	N
1204	chr6	81154407	81154408	rs78461223	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6q14.1	RP11-250B2.3	rs78461223-A	NR	3E-9		0.0614447	[0.041-0.082] unit increase	Affymetrix [321114] (imputed)	N
1204	chr6	81154407	81154408	rs78461223	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6q14.1	NR	rs78461223-?	NR	4E-11				Affymetrix [~ 8270000] (imputed)	N
1204	chr6	81161244	81161245	rs9350858	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6q14.1	RP11-250B2.3	rs9350858-A	NR	1E-8		0.0205358	[0.014-0.028] unit increase	Affymetrix [319769] (imputed)	N
1204	chr6	81161244	81161245	rs9350858	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6q14.1	RP11-250B2.3	rs9350858-A	NR	2E-8		0.0202812	[0.013-0.027] unit increase	Affymetrix [319769] (imputed)	N
1204	chr6	81163430	81163431	rs148967554	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6q14.1	NR	rs148967554-T	0.01045	2E-8	(AOC3)	0.02164	NR unit increase	Illumina [1671387] (imputed)	N
1204	chr6	81176394	81176395	rs486831	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6q14.1	RP11-250B2.5	rs486831-T	NR	1E-11		0.0190942	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
1204	chr6	81176394	81176395	rs486831	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6q14.1	RP11-250B2.5	rs486831-T	NR	2E-12		0.0198726	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
1204	chr6	81176394	81176395	rs486831	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6q14.1	RP11-250B2.5	rs486831-T	NR	5E-9		0.0166988	[0.011-0.022] unit increase	Affymetrix [321169] (imputed)	N
1204	chr6	81206543	81206544	rs183857525	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6q14.1	RP11-11L12.2	rs183857525-G	NR	5E-11		0.0291954	[0.02-0.038] unit increase	Affymetrix [321016] (imputed)	N
1204	chr6	81206555	81206556	rs9449003	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6q14.1	RP11-11L12.2	rs9449003-A	NR	2E-10		0.018247	[0.013-0.024] unit increase	Affymetrix [321114] (imputed)	N
1204	chr6	81206555	81206556	rs9449003	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6q14.1	RP11-11L12.2	rs9449003-A	NR	4E-8		0.0170613	[0.011-0.023] unit increase	Affymetrix [321114] (imputed)	N
1204	chr6	81206555	81206556	rs9449003	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6q14.1	NR	rs9449003-A	0.4925	3E-6	(EA)	0.0295	[0.017-0.042] unit decrease	Illumina [~ 11800000] (imputed)	N
1204	chr6	81222693	81222694	rs61669709	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6q14.1	NR	rs61669709-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1204	chr6	81228721	81228722	rs658839	31417091	Kou I	2019-08-15	Nat Commun	Genome-wide association study identifies 14 previously unreported susceptibility loci for adolescent idiopathic scoliosis in Japanese.	Adolescent idiopathic scoliosis	5,327 Japanese ancestry cases, 73,884 Japanese ancestry controls	NA	6q14.1	BCKDHB, FAM46A	rs658839-G	0.51	3E-9		1.14	[1.09-1.19]	Illumina [9332516] (imputed)	N
1205	chr6	81275565	81275566	rs117115609	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	6q14.1		rs117115609-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1205	chr6	81279193	81279194	rs545747966	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6q14.1	RP11-486E2.1	rs545747966-A	NR	2E-8		0.0476428	[0.031-0.064] unit increase	Affymetrix [323123] (imputed)	N
1205	chr6	81283722	81283723	rs549752801	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	6q14.1	BCKDHB, FAM46A	rs549752801-?	NR	2E-9		0.026964942	[0.018-0.036] unit increase	Illumina [27896057] (imputed)	N
1205	chr6	81301740	81301741	rs2603458	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6q14.1	NR	rs2603458-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
1205	chr6	81302804	81302805	rs10943724	23400010	Del-Aguila JL	2013-02-12	Pharmacogenomics J	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NA	6q14.1	BCKDHB	rs10943724-A	0.31	7E-6	(EA-triglyceride response)	19.77	[11.15-28.39] mg/dL decrease	Affymetrix, Illumina [> 2000000] (imputed)	N
1205	chr6	81310586	81310587	rs9449093	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6q14.1	RP11-486E2.1	rs9449093-T	NR	5E-11		0.019495	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
1205	chr6	81310586	81310587	rs9449093	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6q14.1	RP11-486E2.1	rs9449093-T	NR	2E-11		0.020013	[0.014-0.026] unit increase	Affymetrix [319769] (imputed)	N
1205	chr6	81315596	81315597	rs9443804	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6q14.1	RP11-486E2.1	rs9443804-G	NR	6E-15		0.0223901	[0.017-0.028] unit increase	Affymetrix [321114] (imputed)	N
1205	chr6	81315596	81315597	rs9443804	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6q14.1	RP11-486E2.1	rs9443804-G	NR	6E-10		0.0177891	[0.012-0.023] unit increase	Affymetrix [321169] (imputed)	N
1205	chr6	81315596	81315597	rs9443804	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	6q14.1	RP11-486E2.1	rs9443804-A	0.5523	2E-6		0.0324	[0.019-0.046] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1205	chr6	81318835	81318836	rs2444793	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6q14.1	RP11-486E2.1	rs2444793-C	NR	7E-11		0.0184626	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
1205	chr6	81318835	81318836	rs2444793	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6q14.1	RP11-486E2.1	rs2444793-C	NR	5E-12		0.0195621	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
1205	chr6	81326211	81326211	rs138783592	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6q14.1	RP11-486E2.1	rs138783592-AG	NR	2E-12		0.0219614	[0.016-0.028] unit increase	Affymetrix [321114] (imputed)	N
1205	chr6	81335887	81335888	rs1584899	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6q14.1	RP11-486E2.1	rs1584899-A	NR	9E-10		0.0185045	[0.013-0.024] unit decrease	Affymetrix [319769] (imputed)	N
1205	chr6	81335887	81335888	rs1584899	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6q14.1	RP11-486E2.1	rs1584899-A	NR	9E-11		0.0195803	[0.014-0.026] unit decrease	Affymetrix [319769] (imputed)	N
1205	chr6	81335887	81335888	rs1584899	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6q14.1	NR	rs1584899-?	NR	1E-14				Affymetrix [~ 8270000] (imputed)	N
1205	chr6	81338494	81338495	rs1902070	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	6q14.1		rs1902070-T	0.395841	7E-26		0.0215843	[0.018-0.026] unit decrease	Illumina [13479295] (imputed)	N
1205	chr6	81338494	81338495	rs1902070	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6q14.1	RP11-486E2.1	rs1902070-T	NR	6E-9		0.0179274	[0.012-0.024] unit decrease	Affymetrix [319769] (imputed)	N
1205	chr6	81338494	81338495	rs1902070	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	6q14.1	BCKDHB, FAM46A	rs1902070-?	NR	6E-27		0.031265274	[0.026-0.037] unit decrease	Illumina [27896057] (imputed)	N
1205	chr6	81341168	81341169	rs13194702	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6q14.1		rs13194702-?	NR	4E-17				NR [~ 8900000] (imputed)	N
1205	chr6	81342884	81342885	rs2496689	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6q14.1	RP11-486E2.1	rs2496689-A	NR	2E-15		0.0238284	[0.018-0.03] unit decrease	Affymetrix [321114] (imputed)	N
1205	chr6	81342884	81342885	rs2496689	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6q14.1	RP11-486E2.1	rs2496689-A	NR	3E-12		0.0226314	[0.016-0.029] unit decrease	Affymetrix [321114] (imputed)	N
1205	chr6	81342884	81342885	rs2496689	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6q14.1	RP11-486E2.1	rs2496689-A	NR	4E-10		0.0187363	[0.013-0.025] unit decrease	Affymetrix [321169] (imputed)	N
1205	chr6	81342884	81342885	rs2496689	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6q14.1	NR	rs2496689-?	NR	9E-29				Affymetrix [~ 8270000] (imputed)	N
1205	chr6	81344555	81344556	rs2444800	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6q14.1	RP11-486E2.1	rs2444800-C	NR	2E-8		0.0160879	[0.01-0.022] unit decrease	Affymetrix [319769] (imputed)	N
1205	chr6	81344555	81344556	rs2444800	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6q14.1	RP11-486E2.1	rs2444800-C	NR	1E-8		0.0163882	[0.011-0.022] unit decrease	Affymetrix [319769] (imputed)	N
1205	chr6	81346032	81346033	rs1902066	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6q14.1	RP11-486E2.1	rs1902066-T	NR	5E-17		0.0239197	[0.018-0.03] unit decrease	Affymetrix [319769] (imputed)	N
1205	chr6	81346032	81346033	rs1902066	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6q14.1	RP11-486E2.1	rs1902066-T	NR	2E-18		0.0250227	[0.019-0.031] unit decrease	Affymetrix [319769] (imputed)	N
1205	chr6	81346032	81346033	rs1902066	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6q14.1	RP11-486E2.1	rs1902066-T	NR	4E-26		0.0304182	[0.025-0.036] unit decrease	Affymetrix [321114] (imputed)	N
1205	chr6	81346032	81346033	rs1902066	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6q14.1	RP11-486E2.1	rs1902066-T	NR	3E-11		0.0207292	[0.015-0.027] unit decrease	Affymetrix [321114] (imputed)	N
1205	chr6	81346032	81346033	rs1902066	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	6q14.1	NR	rs1902066-T	0.4452	2E-23		0.018	[0.014-0.022] unit decrease	NR [~ 27400000] (imputed)	N
1205	chr6	81346032	81346033	rs1902066	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6q14.1	NR	rs1902066-C	0.5571	7E-6	(EA)	0.0281	[0.016-0.04] unit decrease	Illumina [~ 11800000] (imputed)	N
1205	chr6	81347903	81347904	rs16892045	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6q14.1	RP11-486E2.1	rs16892045-G	NR	7E-9		0.0232976	[0.015-0.031] unit decrease	Affymetrix [321114] (imputed)	N
1205	chr6	81349755	81349756	rs2503749	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6q14.1	RP11-486E2.1	rs2503749-T	NR	2E-15		0.0227241	[0.017-0.028] unit increase	Affymetrix [321169] (imputed)	N
1205	chr6	81350901	81350902	rs4571527	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6q14.1	RP11-486E2.1	rs4571527-C	NR	2E-9		0.0196274	[0.013-0.026] unit decrease	Affymetrix [321114] (imputed)	N
1205	chr6	81355121	81355122	rs111438564	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6q14.1	RP11-486E2.1	rs111438564-G	NR	4E-13		0.03821	[0.028-0.049] unit increase	Affymetrix [321016] (imputed)	N
1205	chr6	81358165	81358166	rs2496694	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6q14.1	RP11-486E2.1	rs2496694-G	NR	4E-11		0.019125	[0.013-0.025] unit decrease	Affymetrix [319769] (imputed)	N
1205	chr6	81358165	81358166	rs2496694	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6q14.1	RP11-486E2.1	rs2496694-G	NR	7E-11		0.0188727	[0.013-0.025] unit decrease	Affymetrix [319769] (imputed)	N
1205	chr6	81358165	81358166	rs2496694	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6q14.1	RP11-486E2.1	rs2496694-G	NR	4E-8		0.0160268	[0.01-0.022] unit decrease	Affymetrix [321169] (imputed)	N
1205	chr6	81358165	81358166	rs2496694	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6q14.1	NR	rs2496694-?	NR	2E-12				Affymetrix [~ 8270000] (imputed)	N
1205	chr6	81358588	81358589	rs9361631	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6q14.1	RP11-486E2.1	rs9361631-T	NR	3E-8		0.019106	[0.012-0.026] unit decrease	Affymetrix [319769] (imputed)	N
1205	chr6	81358588	81358589	rs9361631	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6q14.1	RP11-486E2.1	rs9361631-T	NR	2E-8		0.0194497	[0.013-0.026] unit decrease	Affymetrix [319769] (imputed)	N
1205	chr6	81360692	81360693	rs2503756	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6q14.1	RP11-486E2.1	rs2503756-C	NR	9E-12		0.0198892	[0.014-0.026] unit decrease	Affymetrix [321169] (imputed)	N
1205	chr6	81379923	81379924	rs2444820	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6q14.1	RP11-486E2.1	rs2444820-C	NR	2E-17		0.0242842	[0.019-0.03] unit increase	Affymetrix [319769] (imputed)	N
1205	chr6	81379923	81379924	rs2444820	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6q14.1	RP11-486E2.1	rs2444820-C	NR	3E-18		0.0248554	[0.019-0.03] unit increase	Affymetrix [319769] (imputed)	N
1205	chr6	81379923	81379924	rs2444820	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6q14.1	RP11-486E2.1	rs2444820-C	NR	2E-16		0.0235732	[0.018-0.029] unit increase	Affymetrix [321114] (imputed)	N
1205	chr6	81387849	81387850	rs62424499	31417091	Kou I	2019-08-15	Nat Commun	Genome-wide association study identifies 14 previously unreported susceptibility loci for adolescent idiopathic scoliosis in Japanese.	Adolescent idiopathic scoliosis	5,004 Japanese ancestry female cases, 33,679 Japanese ancestry female controls	NA	6q14.1	BCKDHB/FAM46A	rs62424499-A	0.692743	6E-9		1.16	[1.10-1.22]	Illumina [9332516] (imputed)	N
1205	chr6	81391699	81391700	rs145184979	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6q14.1	RP11-486E2.1	rs145184979-T	NR	3E-8		0.0417173	[0.027-0.057] unit decrease	Affymetrix [321114] (imputed)	N
1205	chr6	81392004	81392005	rs9361640	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6q14.1	RP11-486E2.1	rs9361640-C	NR	2E-11		0.0206382	[0.015-0.027] unit decrease	Affymetrix [321169] (imputed)	N
1205	chr6	81392951	81392952	rs9352851	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6q14.1	RP11-486E2.1	rs9352851-A	NR	5E-8		0.0157212	[0.01-0.021] unit decrease	Affymetrix [319769] (imputed)	N
1205	chr6	81392951	81392952	rs9352851	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6q14.1	RP11-486E2.1	rs9352851-A	NR	3E-8		0.0159247	[0.01-0.022] unit decrease	Affymetrix [319769] (imputed)	N
1205	chr6	81392951	81392952	rs9352851	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6q14.1	RP11-486E2.1	rs9352851-A	NR	3E-8		0.0162162	[0.011-0.022] unit decrease	Affymetrix [321114] (imputed)	N
1205	chr6	81393365	81393366	rs1377985	29234017	Carayol J	2017-12-12	Nat Commun	Protein quantitative trait locus study in obesity during weight-loss identifies a leptin regulator.	Protein level change in low calorie diet obesity intervention	494 European ancestry individuals	NA	6q14.1	BCKDHB, FAM46A	rs1377985-?	NR	9E-6	(HSP70)			Illumina [4020654] (imputed)	N
1205	chr6	81394731	81394732	rs200034829	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	6q14.1	NR	rs200034829-C	0.0479906	2E-8		0.0893825	[0.058-0.121] unit increase	Affymetrix [17914406] (imputed)	N
1206	chr6	81400748	81400749	rs9344031	29234017	Carayol J	2017-12-12	Nat Commun	Protein quantitative trait locus study in obesity during weight-loss identifies a leptin regulator.	Protein level change in low calorie diet obesity intervention	494 European ancestry individuals	NA	6q14.1	NR	rs9344031-?	NR	1E-7	(Leptin)	0.31	[0.19-0.43] unit increase	Illumina [4020654] (imputed)	N
1206	chr6	81401788	81401789	rs1454467	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6q14.1	RP11-486E2.1	rs1454467-C	NR	7E-9		0.0171159	[0.011-0.023] unit decrease	Affymetrix [319769] (imputed)	N
1206	chr6	81401788	81401789	rs1454467	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6q14.1	RP11-486E2.1	rs1454467-C	NR	7E-10		0.0182021	[0.012-0.024] unit decrease	Affymetrix [319769] (imputed)	N
1206	chr6	81401788	81401789	rs1454467	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6q14.1	RP11-486E2.1	rs1454467-C	NR	9E-16		0.0239408	[0.018-0.03] unit decrease	Affymetrix [321114] (imputed)	N
1206	chr6	81401897	81401898	rs72892161	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6q14.1	RP11-486E2.1	rs72892161-T	NR	4E-15		0.0221824	[0.017-0.028] unit increase	Affymetrix [319769] (imputed)	N
1206	chr6	81401897	81401898	rs72892161	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6q14.1	RP11-486E2.1	rs72892161-T	NR	1E-15		0.0226705	[0.017-0.028] unit increase	Affymetrix [319769] (imputed)	N
1206	chr6	81401897	81401898	rs72892161	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6q14.1	RP11-486E2.1	rs72892161-T	NR	1E-15		0.0228513	[0.017-0.028] unit increase	Affymetrix [321114] (imputed)	N
1206	chr6	81402537	81402538	rs1454469	28644415	Guenard F	2017-06-23	Nutrients	Genome-Wide Association Study of Dietary Pattern Scores.	Prudent dietary pattern	141 individuals	NA	6q14.1	BCKDHB	rs1454469-?		4E-6				Illumina [2668805]	N
1206	chr6	81413459	81413460	rs6938937	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6q14.1	NR	rs6938937-?	NR	7E-13				Affymetrix [~ 8270000] (imputed)	N
1206	chr6	81428335	81428336	rs2123993	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6q14.1	RP11-486E2.1	rs2123993-G	NR	1E-14		0.0220388	[0.016-0.028] unit increase	Affymetrix [321169] (imputed)	N
1206	chr6	81430121	81430122	rs2789753	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6q14.1	RP11-486E2.1	rs2789753-T	NR	4E-9		0.0188508	[0.013-0.025] unit decrease	Affymetrix [319769] (imputed)	N
1206	chr6	81430121	81430122	rs2789753	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6q14.1	RP11-486E2.1	rs2789753-T	NR	4E-16		0.0263454	[0.02-0.033] unit decrease	Affymetrix [321114] (imputed)	N
1206	chr6	81430121	81430122	rs2789753	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6q14.1	RP11-486E2.1	rs2789753-T	NR	2E-9		0.0194642	[0.013-0.026] unit decrease	Affymetrix [321169] (imputed)	N
1206	chr6	81430129	81430130	rs2789754	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6q14.1	RP11-486E2.1	rs2789754-C	NR	9E-9		0.020159	[0.013-0.027] unit decrease	Affymetrix [321114] (imputed)	N
1206	chr6	81436012	81436013	rs1339382	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6q14.1	RP11-486E2.1	rs1339382-G	NR	7E-16		0.0231397	[0.018-0.029] unit decrease	Affymetrix [319769] (imputed)	N
1206	chr6	81436012	81436013	rs1339382	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6q14.1	RP11-486E2.1	rs1339382-G	NR	1E-17		0.024567	[0.019-0.03] unit decrease	Affymetrix [319769] (imputed)	N
1206	chr6	81436012	81436013	rs1339382	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6q14.1	RP11-486E2.1	rs1339382-G	NR	3E-29		0.0325062	[0.027-0.038] unit decrease	Affymetrix [321114] (imputed)	N
1206	chr6	81436012	81436013	rs1339382	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6q14.1	NR	rs1339382-?	NR	8E-23				Affymetrix [~ 8270000] (imputed)	N
1206	chr6	81436012	81436013	rs1339382	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6q14.1	NR	rs1339382-?	NR	4E-42				Affymetrix [~ 8270000] (imputed)	N
1206	chr6	81436166	81436167	rs9352857	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6q14.1	RP11-486E2.1	rs9352857-G	NR	1E-15		0.0269047	[0.02-0.033] unit decrease	Affymetrix [321114] (imputed)	N
1206	chr6	81443422	81443423	rs7773045	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	6q14.1	NA	rs7773045-T	0.9211	6E-6		0.0137	[0.0078-0.0196] unit increase	NR [~ 27400000] (imputed)	N
1206	chr6	81444201	81444202	rs72624519	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6q14.1	RP11-486E2.1	rs72624519-T	NR	2E-11		0.0221852	[0.016-0.029] unit decrease	Affymetrix [319769] (imputed)	N
1206	chr6	81444201	81444202	rs72624519	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6q14.1	RP11-486E2.1	rs72624519-T	NR	6E-12		0.0229102	[0.016-0.029] unit decrease	Affymetrix [319769] (imputed)	N
1206	chr6	81444322	81444323	rs6921344	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6q14.1	RP11-486E2.1	rs6921344-T	NR	1E-19		0.0268174	[0.021-0.033] unit decrease	Affymetrix [321169] (imputed)	N
1206	chr6	81450224	81450225	rs9352859	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6q14.1	RP11-486E2.1	rs9352859-C	NR	1E-8		0.0167237	[0.011-0.022] unit decrease	Affymetrix [319769] (imputed)	N
1206	chr6	81450224	81450225	rs9352859	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6q14.1	RP11-486E2.1	rs9352859-C	NR	3E-8		0.0163411	[0.011-0.022] unit decrease	Affymetrix [319769] (imputed)	N
1206	chr6	81454925	81454926	rs35042882	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6q14.1	RP11-486E2.1	rs35042882-C	NR	2E-12		0.0300541	[0.022-0.038] unit increase	Affymetrix [321016] (imputed)	N
1206	chr6	81459757	81459758	rs56921855	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6q14.1		rs56921855-?	NR	1E-21				NR [~ 8900000] (imputed)	N
1206	chr6	81460039	81460039	rs35208145	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6q14.1	RP11-486E2.1	rs35208145-G	0.8951	6E-7		0.0545	[0.033-0.076] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1206	chr6	81473818	81473819	rs35520373	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6q14.1	NR	rs35520373-?	NR	3E-16				Affymetrix [~ 8270000] (imputed)	N
1206	chr6	81479113	81479114	rs12524378	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6q14.1	RP11-486E2.1	rs12524378-A	NR	3E-10		0.0401424	[0.028-0.053] unit increase	Affymetrix [319769] (imputed)	N
1206	chr6	81479113	81479114	rs12524378	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6q14.1	RP11-486E2.1	rs12524378-A	NR	2E-10		0.0407088	[0.028-0.053] unit increase	Affymetrix [319769] (imputed)	N
1206	chr6	81479113	81479114	rs12524378	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6q14.1	NR	rs12524378-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
1206	chr6	81481353	81481354	rs6902257	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6q14.1	LOC442232	rs6902257-A	0.015	7E-6	(Fat mass deposition )	0.04	[NR] kcal/d increase	Illumina [899892]	N
1206	chr6	81481782	81481783	rs9352866	25758998	Rubicz R	2015-03-11	Eur J Hum Genet	Genome-wide genetic investigation of serological measures of common infections.	Antibody level in response to infection	1,932 Mexican American individuals	NA	6q14.1	FAM46A	rs9352866-T	0.397	2E-7	(Human herpesvirus 8)	0.17	[NR] unit decrease	Illumina [944565]	N
1206	chr6	81510117	81510118	rs9352872	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	6q14.1	NR	rs9352872-C	0.5334	2E-13		0.0144	[0.01-0.018] unit decrease	NR [~ 27400000] (imputed)	N
1206	chr6	81519159	81519160	rs561447462	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6q14.1		rs561447462-T	2.06999999999957E-4	5E-9		0.49291223	[0.33-0.66] unit decrease	Affymetrix [93095623] (imputed)	N
1207	chr6	81532314	81532315	rs146470008	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6q14.1	RP11-486E2.1	rs146470008-A	NR	4E-9		0.0457977	[0.031-0.061] unit increase	Affymetrix [321114] (imputed)	N
1207	chr6	81536476	81536477	rs117174199	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6q14.1	NR	rs117174199-?	NR	1E-13				Affymetrix [~ 8270000] (imputed)	N
1207	chr6	81543809	81543810	rs9283799	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6q14.1	RP11-486E2.1	rs9283799-G	NR	1E-9		0.0189249	[0.013-0.025] unit decrease	Affymetrix [321169] (imputed)	N
1207	chr6	81550622	81550623	rs72899820	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6q14.1	RP11-486E2.1	rs72899820-C	NR	4E-8		0.0340065	[0.022-0.046] unit increase	Affymetrix [321114] (imputed)	N
1207	chr6	81550622	81550623	rs72899820	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6q14.1	NR	rs72899820-?	NR	5E-15				Affymetrix [~ 8270000] (imputed)	N
1207	chr6	81557963	81557964	rs185601339	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6q14.1	RP11-486E2.1	rs185601339-T	NR	4E-10		0.0398052	[0.027-0.052] unit decrease	Affymetrix [321114] (imputed)	N
1207	chr6	81557963	81557964	rs185601339	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6q14.1	NR	rs185601339-?	NR	2E-12				Affymetrix [~ 8270000] (imputed)	N
1207	chr6	81567743	81567744	rs79269608	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6q14.1	RP11-486E2.1	rs79269608-C	NR	1E-12		0.0657076	[0.048-0.084] unit increase	Affymetrix [321114] (imputed)	N
1207	chr6	81578292	81578293	rs481777	29234017	Carayol J	2017-12-12	Nat Commun	Protein quantitative trait locus study in obesity during weight-loss identifies a leptin regulator.	Protein level change in low calorie diet obesity intervention	494 European ancestry individuals	NA	6q14.1	NR	rs481777-?	NR	1E-7	(Leptin)	0.22	[0.14-0.3] unit increase	Illumina [4020654] (imputed)	N
1207	chr6	81591033	81591034	rs578366	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6q14.1	RP11-486E2.1	rs578366-G	NR	1E-11		0.0211841	[0.015-0.027] unit decrease	Affymetrix [321114] (imputed)	N
1207	chr6	81607857	81607858	rs3967101	29855537	Hirata T	2018-05-31	Sci Rep	Japanese GWAS identifies variants for bust-size, dysmenorrhea, and menstrual fever that are eQTLs for relevant protein-coding or long non-coding RNAs.	Menstruation quality of life impact (acne)	1,115 Japanese ancestry female cases, 4,619 Japanese ancestry female controls	1,204 Japanese ancestry female cases, 4,410 Japanese ancestry female controls	6q14.1	NR	rs3967101-A	0.286455799	9E-6		0.16903496	[0.094-0.244] unit decrease	Affymetrix [536506]	N
1207	chr6	81621943	81621944	rs12174556	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6q14.1	RP11-486E2.1	rs12174556-C	NR	8E-11		0.0216184	[0.015-0.028] unit decrease	Affymetrix [319769] (imputed)	N
1207	chr6	81621943	81621944	rs12174556	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6q14.1	RP11-486E2.1	rs12174556-C	NR	3E-11		0.0220277	[0.016-0.029] unit decrease	Affymetrix [319769] (imputed)	N
1207	chr6	81621943	81621944	rs12174556	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6q14.1	RP11-486E2.1	rs12174556-C	NR	5E-10		0.0208243	[0.014-0.027] unit decrease	Affymetrix [321114] (imputed)	N
1207	chr6	81624110	81624111	rs527075	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6q14.1	RP11-486E2.1	rs527075-A	NR	2E-12		0.0254081	[0.018-0.032] unit decrease	Affymetrix [321169] (imputed)	N
1207	chr6	81646180	81646180	rs200606390	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6q14.1	RP11-486E2.1	rs200606390-GT	NR	3E-16		0.0265571	[0.02-0.033] unit decrease	Affymetrix [319769] (imputed)	N
1207	chr6	81646180	81646180	rs200606390	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6q14.1	RP11-486E2.1	rs200606390-GT	NR	2E-17		0.0276242	[0.021-0.034] unit decrease	Affymetrix [319769] (imputed)	N
1207	chr6	81646180	81646180	rs200606390	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6q14.1	RP11-486E2.1	rs200606390-GT	NR	2E-22		0.0320262	[0.026-0.038] unit decrease	Affymetrix [321114] (imputed)	N
1207	chr6	81646180	81646180	rs200606390	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6q14.1	RP11-486E2.1	rs200606390-GT	NR	1E-8		0.0204852	[0.013-0.027] unit decrease	Affymetrix [321114] (imputed)	N
1207	chr6	81648444	81648445	rs534800	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6q14.1	RP11-486E2.1	rs534800-G	NR	3E-8		0.0234006	[0.015-0.032] unit decrease	Affymetrix [319769] (imputed)	N
1207	chr6	81648444	81648445	rs534800	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6q14.1	RP11-486E2.1	rs534800-G	NR	2E-8		0.0237655	[0.016-0.032] unit decrease	Affymetrix [319769] (imputed)	N
1207	chr6	81648444	81648445	rs534800	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	6q14.1		rs534800-?	NR	6E-16				NR [~ 8900000] (imputed)	N
1207	chr6	81649643	81649644	rs533393	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6q14.1	RP11-486E2.1	rs533393-G	NR	2E-23		0.0285196	[0.023-0.034] unit decrease	Affymetrix [321114] (imputed)	N
1207	chr6	81649909	81649910	rs1145861	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6q14.1	RP11-486E2.1	rs1145861-C	NR	3E-8		0.0236459	[0.015-0.032] unit decrease	Affymetrix [321169] (imputed)	N
1208	chr6	81662101	81662102	rs530894	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6q14.1	RP11-486E2.1	rs530894-A	NR	7E-14		0.0216953	[0.016-0.027] unit decrease	Affymetrix [319769] (imputed)	N
1208	chr6	81662101	81662102	rs530894	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6q14.1	RP11-486E2.1	rs530894-A	NR	2E-15		0.0229943	[0.017-0.029] unit decrease	Affymetrix [319769] (imputed)	N
1208	chr6	81662101	81662102	rs530894	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	6q14.1		rs530894-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1208	chr6	81662135	81662136	rs9344070	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6q14.1	RP11-486E2.1	rs9344070-G	NR	2E-9		0.0243939	[0.016-0.032] unit decrease	Affymetrix [321114] (imputed)	N
1208	chr6	81662546	81662547	rs62426178	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6q14.1	RP11-486E2.1	rs62426178-G	NR	3E-15		0.0231546	[0.017-0.029] unit decrease	Affymetrix [321169] (imputed)	N
1208	chr6	81671406	81671407	rs73750943	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Temporal pole volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	6q14.1	NR	rs73750943-?		2E-6				Illumina [4322238] (imputed)	N
1208	chr6	81672096	81672097	rs10485279	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6q14.1	RP11-486E2.1	rs10485279-T	NR	9E-9		0.0204038	[0.013-0.027] unit decrease	Affymetrix [321169] (imputed)	N
1208	chr6	81672096	81672097	rs10485279	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6q14.1	NR	rs10485279-?	NR	3E-12				Affymetrix [~ 8270000] (imputed)	N
1208	chr6	81680660	81680661	rs985497	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6q14.1	RP11-486E2.1	rs985497-G	NR	1E-9		0.0191511	[0.013-0.025] unit decrease	Affymetrix [321114] (imputed)	N
1208	chr6	81684196	81684197	rs77199079	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6q14.1	RP11-486E2.1	rs77199079-A	NR	1E-11		0.03618	[0.026-0.047] unit increase	Affymetrix [319769] (imputed)	N
1208	chr6	81684196	81684197	rs77199079	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6q14.1	RP11-486E2.1	rs77199079-A	NR	1E-11		0.0362498	[0.026-0.047] unit increase	Affymetrix [319769] (imputed)	N
1208	chr6	81684571	81684572	rs9341838	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6q14.1	RP11-486E2.1	rs9341838-T	NR	9E-9		0.01885	[0.012-0.025] unit decrease	Affymetrix [321114] (imputed)	N
1208	chr6	81705250	81705251	rs12183665	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6q14.1	RP11-486E2.1	rs12183665-T	NR	1E-9		0.0178026	[0.012-0.024] unit decrease	Affymetrix [319769] (imputed)	N
1208	chr6	81705250	81705251	rs12183665	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6q14.1	RP11-486E2.1	rs12183665-T	NR	4E-11		0.0193035	[0.014-0.025] unit decrease	Affymetrix [319769] (imputed)	N
1208	chr6	81706457	81706458	rs79493866	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6q14.1	NR	rs79493866-?	NR	5E-19				Affymetrix [~ 8270000] (imputed)	N
1208	chr6	81706457	81706458	rs79493866	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6q14.1		rs79493866-?	NR	3E-63				NR [~ 8900000] (imputed)	N
1208	chr6	81723934	81723935	rs190569074	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6q14.1	RP11-486E2.1	rs190569074-T	NR	3E-9		0.0515589	[0.035-0.069] unit increase	Affymetrix [319769] (imputed)	N
1208	chr6	81723934	81723935	rs190569074	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6q14.1	RP11-486E2.1	rs190569074-T	NR	3E-9		0.0517326	[0.035-0.069] unit increase	Affymetrix [319769] (imputed)	N
1208	chr6	81744022	81744022	rs3082905	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6q14.1	FAM46A	rs3082905-AATTAC	NR	4E-10		0.0183979	[0.013-0.024] unit decrease	Affymetrix [321169] (imputed)	N
1208	chr6	81768520	81768521	rs7749269	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6q14.1	FAM46A	rs7749269-G	NR	6E-15		0.0237032	[0.018-0.03] unit decrease	Affymetrix [321114] (imputed)	N
1208	chr6	81769637	81769638	rs6940982	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6q14.1	FAM46A	rs6940982-G	NR	2E-8		0.0198049	[0.013-0.027] unit decrease	Affymetrix [321016] (imputed)	N
1208	chr6	81772948	81772949	rs9350900	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6q14.1	FAM46A	rs9350900-C	NR	3E-10		0.0228907	[0.016-0.03] unit decrease	Affymetrix [321114] (imputed)	N
1208	chr6	81773085	81773086	rs62425821	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-18 levels	3,636 Finnish ancestry individuals	NA	6q14.1	NR	rs62425821-G		9E-6		0.1548	[0.087-0.223] SD units increase	NR [10700000] (imputed)	N
1208	chr6	81773989	81773990	rs9350902	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6q14.1	NR	rs9350902-?	NR	5E-12				Affymetrix [~ 8270000] (imputed)	N
1209	chr6	81792062	81792063	rs310421	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	6q14.1	FAM46A	rs310421-T	0.537	3E-27		0.032	[0.026-0.038] unit increase	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
1209	chr6	81800361	81800362	rs310405	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6q14.1	FAM46A	rs310405-G	NR	2E-11		0.0189446	[0.013-0.024] unit decrease	Affymetrix [321016] (imputed)	N
1209	chr6	81800361	81800362	rs310405	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	6q14.1	FAM46A	rs310405-A	0.52	1E-10		1.14	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
1209	chr6	81800361	81800362	rs310405	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	6q14.1	FAM46A	rs310405-A	0.52	2E-13		0.026	[NR] unit increase	Affymetrix, Illumina [2834208] (imputed)	N
1209	chr6	81809120	81809121	rs568777	29782485	Rueger S	2018-05-21	PLoS Genet	Evaluation and application of summary statistic imputation to discover new height-associated loci.	Height	253,288 European ancestry individuals	336,474 European ancestry individuals	6q14.1	intergenic	rs568777-G	0.73393282200476	3E-35		0.021355335	unit increase	NR [9276018] (imputed)	N
1209	chr6	81814323	81814324	rs9341844	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6q14.1		rs9341844-?	NR	2E-55				NR [~ 8900000] (imputed)	N
1209	chr6	81815425	81815425	rs56316756	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6q14.1	FAM46A	rs56316756-CCT	NR	2E-10		0.020185	[0.014-0.026] unit decrease	Affymetrix [321016] (imputed)	N
1209	chr6	81829439	81829439	rs769580286	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	6q14.1	intergenic	rs769580286-G	0.3496	8E-26		0.0215	[0.018-0.025] unit decrease	Affymetrix [18391927] (imputed)	N
1209	chr6	81833262	81833264	rs113649891	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6q14.1	FAM46A	rs113649891-A	0.2762	8E-6		0.0321	[0.018-0.046] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1209	chr6	81843362	81843363	rs6908031	32953199	Liu Z	2019-03-01	J BioX Res	Integrative omics analysis identifies macrophage migration inhibitory factor signaling pathways underlying human hepatic fibrogenesis and fibrosis.	Liver fibrosis (total hepatic collagen content)	102 European ancestry individuals, 19 African ancestry individuals	NA	6q14.1	FAM46A	rs6908031-G	0.2992	8E-7		0.2554	[0.16-0.35] unit decrease	Illumina [533687]	N
1209	chr6	81843362	81843363	rs6908031	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6q14.1	FAM46A	rs6908031-T	0.657	2E-6		0.0347	[0.02-0.049] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1209	chr6	81913275	81913276	rs6906411	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6q14.1	FAM46A	rs6906411-A	NR	4E-9		0.0182075	[0.012-0.024] unit decrease	Affymetrix [323123] (imputed)	N
1210	chr6	81922229	81922230	rs72899309	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6q14.1	FAM46A	rs72899309-A	NR	2E-8		0.0314862	[0.021-0.042] unit increase	Affymetrix [319769] (imputed)	N
1210	chr6	81922229	81922230	rs72899309	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6q14.1	FAM46A	rs72899309-A	NR	1E-8		0.0316822	[0.021-0.043] unit increase	Affymetrix [319769] (imputed)	N
1210	chr6	81934343	81934344	rs190052446	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6q14.1		rs190052446-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1210	chr6	81993937	81993938	rs4257903	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6q14.1	NR	rs4257903-?	NR	4E-9				Affymetrix [~ 8270000] (imputed)	N
1210	chr6	81993937	81993938	rs4257903	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6q14.1	NR	rs4257903-?	NR	1E-10				Affymetrix [~ 8270000] (imputed)	N
1210	chr6	82003751	82003752	rs75164096	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6q14.1	NR	rs75164096-?	NR	9E-9				Affymetrix [~ 8270000] (imputed)	N
1210	chr6	82035730	82035731	rs111703265	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6q14.1	FAM46A	rs111703265-A	NR	1E-8		0.0546632	[0.036-0.073] unit increase	Affymetrix [323123] (imputed)	N
1210	chr6	82035730	82035731	rs111703265	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6q14.1	FAM46A	rs111703265-A	0.0255	2E-6		0.1077	[0.064-0.152] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1211	chr6	82058077	82058078	rs113237937	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6q14.1	NR	rs113237937-?	NR	4E-15				Affymetrix [~ 8270000] (imputed)	N
1211	chr6	82115803	82115804	rs79381654	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6q14.1	FAM46A	rs79381654-C	NR	6E-9		0.0566578	[0.038-0.076] unit increase	Affymetrix [321114] (imputed)	N
1211	chr6	82127882	82127883	rs72907046	26993346	Schott JM	2016-03-15	Alzheimers Dement	Genetic risk factors for the posterior cortical atrophy variant of Alzheimer's disease.	Posterior cortical atrophy and Alzheimer's disease	293 cases, 10,547 healthy controls	NA	6q14.1	FAM46A	rs72907046-?	NR	1E-9		3.2	[2.1-4.9]	Illumina [~ 5900000] (imputed)	N
1211	chr6	82128385	82128386	rs17529111	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	6q14.1		rs17529111-T	NR	3E-10		0.96	[0.95-0.97]	Affymetrix, Illumina [NR] (imputed)	N
1211	chr6	82128385	82128386	rs17529111	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6q14.1	intergenic	rs17529111-C	0.22	1E-9	(EA)	1.02	[1-1.04] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
1211	chr6	82128385	82128386	rs17529111	29058716	Milne RL	2017-10-23	Nat Genet	Identification of ten variants associated with risk of estrogen-receptor-negative breast cancer.	Breast cancer (estrogen-receptor negative)	14,135 European ancestry cases, 58,126 European ancestry controls	7,333 European ancestry cases, 42,468 European ancestry controls	6q14.1	NR	rs17529111-C	0.22	2E-6		1.06	[1.02-1.10] (Oncoarray)	Illumina [~ 11500000] (imputed)	N
1211	chr6	82128385	82128386	rs17529111	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	46,785 European ancestry cases, 42,892 European ancestry controls	NA	6q14.1	NR	rs17529111-C	0.22	5E-7		1.06	[1.04-1.08]	Affymetrix, Illumina [~ 14000000] (imputed)	N
1211	chr6	82128385	82128386	rs17529111	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	15,748 European ancestry cases, 18,084 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls	6q14.1	NR	rs17529111-C	0.22	2E-10		1.06	[1.04-1.08]	Affymetrix, Illumina [~ 11600000] (imputed)	N
1211	chr6	82169304	82169305	rs796350	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6q14.1	FAM46A	rs796350-T	NR	5E-8		0.024224	[0.016-0.033] unit increase	Affymetrix [127266] (imputed)	N
1211	chr6	82169304	82169305	rs796350	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6q14.1	FAM46A	rs796350-T	NR	3E-9		0.0260843	[0.017-0.035] unit increase	Affymetrix [321114] (imputed)	N
1212	chr6	82193108	82193109	rs17530068	23535733	Garcia-Closas M	2013-04-01	Nat Genet	Genome-wide association studies identify four ER negative-specific breast cancer risk loci.	Breast cancer	4,193 European ancestry cases, 35,194 European ancestry controls	6,514 European ancestry cases, 41,455 European ancestry controls	6q14.1	intergenic	rs17530068-C	0.237	3E-6		1.09	[1.05-1.13]	Illumina [NR]	N
1212	chr6	82193108	82193109	rs17530068	23535729	Michailidou K	2013-04-01	Nat Genet	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	6q14.1	intergenic	rs17530068-G	0.22	8E-9		1.05	[1.03-1.08]	Affymetrix, Illumina [~ 2600000] (imputed)	N
1212	chr6	82193108	82193109	rs17530068	22976474	Siddiq A	2012-09-13	Hum Mol Genet	A meta-analysis of genome-wide association studies of breast cancer identifies two novel susceptibility loci at 6q14 and 20q11.	Breast cancer	3,666 European ancestry cases, 28,864 European ancestry controls, 1,004 African American cases, 2,744 African American controls	562 European ancestry cases, 6,410 European ancestry controls, 84 Japanese ancestry cases, 830 Japanese ancestry controls, 300 Latino cases, 1,164 Latino controls	6q14.1	FAM46A, C6orf37	rs17530068-C	0.24	3E-7		1.16	[1.10-1.23]	Illumina [2608509] (imputed)	N
1212	chr6	82220551	82220552	rs6924906	23972371	Franceschini N	2013-08-20	Am J Hum Genet	Genome-wide association analysis of blood-pressure traits in African-ancestry individuals reveals common associated genes in African and non-African populations.	Blood pressure	28,190 African American individuals, 1,188 Nigerian ancestry individuals	69,395 European ancestry individuals, 5,266 African American individuals, 6,497 African ancestry individuals, 19,601 East Asian ancestry individuals	6q14.1	FAM46A, C6orf37	rs6924906-T	0.71	6E-7	(DBP)	0.51	[0.31-0.71] unit decrease	Affymetrix, Illumina [~ 2420000] (imputed)	N
1212	chr6	82249762	82249763	rs76190283	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	6q14.1	NR	rs76190283-G	NR	2E-6	(GEE model)	0.87975	[0.52-1.24] unit decrease	NR [NR] (imputed)	N
1212	chr6	82254931	82254932	rs9361840	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Breast cancer	17,881 European ancestry cases, 410,350 European ancestry controls	NA	6q14.1		rs9361840-G	NR	8E-8		1.0731916	NR	Affymetrix [7846216] (imputed)	N
1212	chr6	82254931	82254932	rs9361840	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6q14.1	NR	rs9361840-G	0.2368	7E-14	(EA)	0.0541	[0.04-0.068] unit increase	Illumina [~ 11800000] (imputed)	N
1212	chr6	82281416	82281417	rs9449350	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	NA	6q14.1	FAM46A	rs9449350-T	0.6795	1E-11		0.2189	[0.16-0.28] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1212	chr6	82297306	82297307	rs72895340	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6q14.1	NR	rs72895340-?	NR	6E-12				Affymetrix [~ 8270000] (imputed)	N
1213	chr6	82325528	82325529	rs9344208	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	6q14.1		rs9344208-?	NR	6E-8				NR [~ 8900000] (imputed)	N
1213	chr6	82334149	82334150	rs77790520	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6q14.1	NR	rs77790520-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
1213	chr6	82335011	82335012	rs10943824	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	6q14.1		rs10943824-?	NR	9E-8				NR [~ 8900000] (imputed)	N
1213	chr6	82375371	82375372	rs189689339	27992416	Lane JM	2016-12-19	Nat Genet	Genome-wide association analyses of sleep disturbance traits identify new loci and highlight shared genetics with neuropsychiatric and metabolic traits.	Excessive daytime sleepiness	111,648 European ancestry individuals	NA	6q14.1	FAM46A	rs189689339-T	0.003	2E-7		0.226	[0.14-0.31] unit increase	Affymetrix [up to 73355677] (imputed)	N
1213	chr6	82387138	82387139	rs6912005	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6q14.1	NR	rs6912005-A	0.2419	2E-11	(EA)	0.0483	[0.034-0.062] unit increase	Illumina [~ 11800000] (imputed)	N
1213	chr6	82424677	82424678	rs16893360	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	6q14.1	NR	rs16893360-A	NR	2E-16		0.0526	[0.04-0.065] unit increase	Affymetrix [9000000] (imputed)	N
1213	chr6	82425524	82425525	rs1145866	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	6q14.1		rs1145866-C	NR	4E-9		0.0209	[0.014-0.028] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
1214	chr6	82456983	82456984	rs3828760	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6q14.1		rs3828760-?	NR	6E-28				NR [~ 8900000] (imputed)	N
1214	chr6	82459033	82459034	rs78707197	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Stable angina pectoris	17,894 European ancestry cases, 325,132 European ancestry controls, 18,833 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	6q14.1		rs78707197-C	NR	3E-8		0.221	[0.14-0.3] unit decrease	Affymetrix, Illumina [20456336] (imputed)	N
1214	chr6	82459033	82459034	rs78707197	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Angina pectoris	30,025 European ancestry cases, 440,906 European ancestry controls, 14,007 East Asian ancestry cases, 145,158 East Asian ancestry controls	NA	6q14.1		rs78707197-C	NR	3E-8		0.221	[0.14-0.3] unit decrease	Affymetrix, Illumina [25842036] (imputed)	N
1214	chr6	82459033	82459034	rs78707197	30104761	Zhou W	2018-08-13	Nat Genet	Efficiently controlling for case-control imbalance and sample relatedness in large-scale genetic association studies.	Coronary artery disease	31,355 European ancestry cases, 377,103 European ancestry controls	NA	6q14.1	FAM46A	rs78707197-C	0.022	4E-10				Affymetrix [28000000] (imputed)	N
1214	chr6	82461326	82461329	rs761736382	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Cystatin C levels	437,846 European ancestry individuals	NA	6q14.1		rs761736382-?	NR	1E-14		1.27281	[0.94-1.61] unit decrease	NR [9800000] (imputed)	N
1214	chr6	82463375	82463376	rs915125	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6q14.1		rs915125-C	0.721	2E-32				Affymetrix [10369434] (imputed)	N
1214	chr6	82463375	82463376	rs915125	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	6q14.1		rs915125-C	0.721	2E-24				Affymetrix [10369434] (imputed)	N
1214	chr6	82463375	82463376	rs915125	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	6q14.1	FAM46A	rs915125-T	0.278941	6E-27		0.026423188	[0.022-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
1214	chr6	82463375	82463376	rs915125	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	6q14.1	FAM46A	rs915125-T	0.278965	3E-12		0.017159466	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1214	chr6	82463375	82463376	rs915125	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	6q14.1	FAM46A	rs915125-T	0.279099	5E-99		0.052144963	[0.047-0.057] unit increase	Affymetrix [93095623] (imputed)	N
1214	chr6	82463375	82463376	rs915125	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	6q14.1	FAM46A	rs915125-T	0.279061	5E-66		0.04223208	[0.037-0.047] unit increase	Affymetrix [93095623] (imputed)	N
1214	chr6	82463375	82463376	rs915125	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	6q14.1	FAM46A	rs915125-T	0.278922	2E-12		0.017337754	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1214	chr6	82463375	82463376	rs915125	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	6q14.1	FAM46A	rs915125-T	0.279037	3E-44		0.034511115	[0.03-0.039] unit decrease	Affymetrix [93095623] (imputed)	N
1214	chr6	82463375	82463376	rs915125	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q14.1	NR	rs915125-T	0.281648	1E-14				Affymetrix, Illumina [23114412] (imputed)	N
1214	chr6	82463375	82463376	rs915125	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	6q14.1	NR	rs915125-T	0.281985	2E-16		0.017639	[0.013-0.022] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
1214	chr6	82463375	82463376	rs915125	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q14.1	NR	rs915125-T	0.281214	4E-56				Affymetrix, Illumina [23467995] (imputed)	N
1214	chr6	82463375	82463376	rs915125	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q14.1	NR	rs915125-T	0.280106	2E-36				Affymetrix, Illumina [19905671] (imputed)	N
1214	chr6	82463375	82463376	rs915125	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	6q14.1	NR	rs915125-T	0.281093	2E-37		0.029254	[0.025-0.034] SD unit decrease	Affymetrix, Illumina [50036608] (imputed)	N
1214	chr6	82463375	82463376	rs915125	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	6q14.1	FAM46A	rs915125-T	0.2812	3E-9		0.02370401	[0.016-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1214	chr6	82463375	82463376	rs915125	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	6q14.1	FAM46A	rs915125-T	0.2811	2E-24		0.04056072	[0.033-0.048] unit increase	Affymetrix [~ 2500000] (imputed)	N
1214	chr6	82463375	82463376	rs915125	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	6q14.1	FAM46A	rs915125-T	0.2813	4E-26		0.04226824	[0.034-0.05] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1214	chr6	82463477	82463479	rs3085271	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	6q14.1		rs3085271-C	NR	9E-52		0.0338	[0.029-0.038] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
1214	chr6	82463477	82463479	rs3085271	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	6q14.1	FAM46A	rs3085271-C	0.31466	5E-44		0.0334038	[0.029-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
1214	chr6	82463477	82463479	rs3085271	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	6q14.1	FAM46A	rs3085271-C	0.3149	2E-13		0.02871801	[0.021-0.036] unit increase	Affymetrix [~ 2500000] (imputed)	N
1214	chr6	82464176	82464177	rs12524255	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	6q14.1		rs12524255-G	0.105002	2E-8		0.0183334	[0.012-0.025] unit decrease	Illumina [13479295] (imputed)	N
1214	chr6	82464179	82464180	rs34951006	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	6q14.1	TENT5A	rs34951006-T	0.137	3E-13		0.0199	[0.015-0.025] unit increase	Affymetrix [18391927] (imputed)	N
1214	chr6	82464986	82464987	rs171835	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	6q14.1	FAM46A	rs171835-?		6E-14				Affymetrix, Illumina [NR] (imputed)	N
1214	chr6	82464986	82464987	rs171835	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6q14.1	NR	rs171835-?	NR	8E-10				Affymetrix [~ 8270000] (imputed)	N
1214	chr6	82464986	82464987	rs171835	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	6q14.1	FAM46A	rs171835-G	0.771757	3E-10		0.0137822	[0.0095-0.0181] unit decrease	NR [13737936] (imputed)	N
1214	chr6	82464986	82464987	rs171835	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	6q14.1		rs171835-?	NR	3E-10				NR [~ 8900000] (imputed)	N
1214	chr6	82464986	82464987	rs171835	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count (basophil)	171,846 European ancestry individuals	NA	6q14.1	FAM46A	rs171835-A	0.2365	8E-9		0.02425279	[0.016-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1214	chr6	82465765	82465766	rs194608	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	6q14.1	FAM46A	rs194608-G	0.98343	3E-9		0.0426199	[0.029-0.057] unit decrease	NR [13737936] (imputed)	N
1214	chr6	82476411	82476412	rs138446732	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	6q14.1	SNORA70, RP5-991C6.2	rs138446732-T	0.00183299999999997	5E-18		0.24540935	[0.19-0.3] unit increase	Affymetrix [93095623] (imputed)	N
1214	chr6	82476411	82476412	rs138446732	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	6q14.1	SNORA70, RP5-991C6.2	rs138446732-T	0.00183	1E-11		0.19227287	[0.14-0.25] unit increase	Affymetrix [93095623] (imputed)	N
1214	chr6	82500761	82500762	rs17718467	27629369	Gao J	2016-09-15	Neuropsychopharmacology	Genome-Wide Association Study of Loneliness Demonstrates a Role for Common Variation.	Loneliness (linear analysis)	8,490 European ancestry individuals, 1,228 African American individuals, 867 Hispanic American individuals, 175 individuals	NA	6q14.1	FAM46A, LINC01526	rs17718467-?		8E-6	(EA)	0.346	[0.19-0.5] unit increase	Illumina [7205781] (imputed)	N
1214	chr6	82500761	82500762	rs17718467	27629369	Gao J	2016-09-15	Neuropsychopharmacology	Genome-Wide Association Study of Loneliness Demonstrates a Role for Common Variation.	Loneliness	2,075 European ancestry cases, 3,875 European ancestry controls, 427 African American cases, 398 African American controls, 294 Hispanic cases, 327 Hispanic controls, 57 cases, 73 controls	NA	6q14.1	FAM46A, LINC01526	rs17718467-?	NR	4E-6	(EA)	0.126	[0.072-0.18] unit increase	Illumina [7176022] (imputed)	N
1214	chr6	82501718	82501719	rs559377462	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	6q14.1		rs559377462-T	0.00105	1E-16		0.31330118	[0.24-0.39] unit decrease	Affymetrix [93095623] (imputed)	N
1214	chr6	82501718	82501719	rs559377462	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	6q14.1		rs559377462-T	0.00104700000000002	3E-12		0.26455328	[0.19-0.34] unit increase	Affymetrix [93095623] (imputed)	N
1214	chr6	82501718	82501719	rs559377462	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	6q14.1		rs559377462-T	0.00104700000000002	1E-13		0.28167084	[0.21-0.36] unit increase	Affymetrix [93095623] (imputed)	N
1214	chr6	82515314	82515315	rs16893526	21606135	Wild PS	2011-05-23	Circ Cardiovasc Genet	A genome-wide association study identifies LIPA as a susceptibility gene for coronary artery disease.	Coronary heart disease	2,078 European ancestry cases, 2,953 European ancestry controls	19,350 European ancestry cases, 35,408 European ancestry controls	6q14.1	intergenic	rs16893526-G	0.91	5E-6		1.13	[1.07-1.21]	Affymetrix [608247]	N
1214	chr6	82517799	82517800	rs79886445	30456828	Khramtsova EA	2018-11-20	Am J Med Genet B Neuropsychiatr Genet	Sex differences in the genetic architecture of obsessive-compulsive disorder.	Obsessive-compulsive disorder x sex interaction	2,774 European ancestry cases, 7,096 European ancestry controls	NA	6q14.1	NR	rs79886445-?	NR	4E-6				NR [~ 5500000] (imputed)	N
1214	chr6	82520020	82520021	rs194633	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	6q14.1	LINC01526	rs194633-A	0.4417	2E-14		0.0146	[0.011-0.018] unit decrease	Affymetrix [18391927] (imputed)	N
1214	chr6	82531585	82531586	rs733415	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6q14.1	NR	rs733415-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1214	chr6	82552533	82552534	rs17662598	32641180	Steffens DC	2020-07-09	Int Psychogeriatr	Genome-wide screen to identify genetic loci associated with cognitive decline in late-life depression.	Cognitive function in depression	222 European ancestry older individuals	NA	6q14.1	NR	rs17662598-?		4E-7				Illumina [3730665] (imputed)	N
1215	chr6	82586257	82586258	rs76080730	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6q14.1		rs76080730-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1215	chr6	82592567	82592568	rs9361866	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	6q14.1	LINC02542	rs9361866-T	0.538108	1E-6		1.04	[1.02-1.05]	NR [8126035] (imputed)	N
1215	chr6	82610187	82610188	rs1931656	30894546	Ivarsdottir EV	2019-03-20	Nat Commun	Sequence variation at ANAPC1 accounts for 24% of the variability in corneal endothelial cell density.	Central corneal thickness	6,125 Icelandic ancestry individuals	1,459 Icelandic ancestry individuals	6q14.1	FAM46A	rs1931656-?	NR	2E-6		0.093	[0.05-0.13] unit increase	Illumina [NR]	N
1215	chr6	82610187	82610188	rs1931656	29760442	Iglesias AI	2018-05-14	Nat Commun	Cross-ancestry genome-wide association analysis of corneal thickness strengthens link between complex and Mendelian eye diseases.	Central corneal thickness	17,803 European ancestry individuals, 8,107 Asian ancestry individuals	NA	6q14.1	FAM46A	rs1931656-A	0.46	6E-15		2.451	[1.84-3.06] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1215	chr6	82612270	82612271	rs4613862	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	6q14.1	intergenic	rs4613862-A	0.5314	7E-10		0.0319	[0.022-0.042] unit increase	Affymetrix [at least 7947838] (imputed)	N
1215	chr6	82612270	82612271	rs4613862	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	6q14.1	intergenic	rs4613862-A	0.5333	1E-9		0.0345	[0.023-0.046] unit increase	NR [8041861] (imputed)	N
1215	chr6	82614532	82614533	rs80083067	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6q14.1		rs80083067-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1215	chr6	82614713	82614714	rs12665247	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Central corneal thickness	16,204 European ancestry individuals	NA	6q14.1	FAM46A	rs12665247-A	0.373	3E-8		2.227	[1.44-3.01] ?m increase	Affymetrix, Illumina [9249813] (imputed)	N
1215	chr6	82616082	82616083	rs2875087	29235454	Choquet H	2017-12-13	Nat Commun	A large multi-ethnic genome-wide association study identifies novel genetic loci for intraocular pressure.	Intraocular pressure	56,819 European ancestry individuals, 5,748 Hispanic/Latino individuals, 5,119 East Asian ancestry individuals, 2,070 African American individuals	37,930 European and Asian ancestry individuals	6q14.1	FAM46A, IBTK	rs2875087-?	NR	9E-18		0.11	[NR] unit increase	Affymetrix [at least 665000] (imputed)	N
1215	chr6	82629789	82629790	rs7744539	33602968	Skuladottir AT	2021-02-18	Sci Rep	A meta-analysis uncovers the first sequence variant conferring risk of Bell's palsy.	Bell's palsy	4,714 European ancestry cases, 1,011,520 European ancestry controls	NA	6q14.1	LOC102724168	rs7744539-A	8.0E-4	8E-6		94.71762	NR	Affymetrix, Illumina [30341632] (imputed)	N
1215	chr6	82645697	82645698	rs16893677	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	6q14.1	NR	rs16893677-?	NR	8E-8				Affymetrix [NR]	N
1215	chr6	82685298	82685299	rs10806234	32390946	Liu L	2020-04-22	Front Endocrinol (Lausanne)	Twelve New Genomic Loci Associated With Bone Mineral Density.	Total body bone mineral density (MTAG)	66,628 individuals	NA	6q14.1	NR	rs10806234-A	0.4	7E-8		0.02	[0.012-0.028] unit decrease	Affymetrix, Illumina [7369691] (imputed)	N
1215	chr6	82685298	82685299	rs10806234	32390946	Liu L	2020-04-22	Front Endocrinol (Lausanne)	Twelve New Genomic Loci Associated With Bone Mineral Density.	Heel bone mineral density (MTAG)	426,824 individuals	NA	6q14.1	NR	rs10806234-A	0.4	3E-8		0.01	[0.0061-0.0139] unit decrease	NR [7369691] (imputed)	N
1215	chr6	82703334	82703335	rs10806235	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	6q14.1	LINC01526, IBTK	rs10806235-?	NR	2E-9		0.0298522	[0.02-0.04] unit increase	Illumina [4804024] (imputed)	N
1215	chr6	82703334	82703335	rs10806235	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	6q14.1	intergenic	rs10806235-T	0.391	1E-8		0.037	[0.025-0.049] unit increase	Affymetrix [7947838] (imputed)	N
1216	chr6	82707153	82707154	rs1361686	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	6q14.1		rs1361686-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1216	chr6	82720534	82720535	rs4449673	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	6q14.1		rs4449673-C	0.63921	2E-13		0.017095942	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1216	chr6	82720897	82720898	rs35826760	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	6q14.1		rs35826760-A	0.597367	1E-10		0.014659634	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
1216	chr6	82720897	82720898	rs35826760	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	6q14.1		rs35826760-A	0.597403	7E-14		0.01703096	[0.013-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1216	chr6	82778501	82778502	rs9361886	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Central corneal thickness	16,204 European ancestry individuals	NA	6q14.1	IBTK	rs9361886-C	0.466	5E-9		2.319	[1.54-3.1] ?m decrease	Affymetrix, Illumina [9249813] (imputed)	N
1216	chr6	82778501	82778502	rs9361886	29760442	Iglesias AI	2018-05-14	Nat Commun	Cross-ancestry genome-wide association analysis of corneal thickness strengthens link between complex and Mendelian eye diseases.	Central corneal thickness	17,803 European ancestry individuals	NA	6q14.1	IBTK	rs9361886-T	0.56	8E-8		2.391	[1.52-3.26] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1216	chr6	82778548	82778549	rs12526513	32716492	Simcoe MJ	2020-07-27	Hum Mol Genet	Genome-wide association study of corneal biomechanical properties identifies over 200 loci providing insight into the genetic aetiology of ocular diseases.	Corneal resistance factor	106,030 European ancestry individuals	9,029 European ancestry individuals	6q14.1	IBTK	rs12526513-T	0.45	6E-28		0.084	[0.068-0.1] unit decrease	Affymetrix [12000000] (imputed)	N
1216	chr6	82778548	82778549	rs12526513	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	6q14.1	LINC01526, IBTK	rs12526513-T	0.4489	2E-13		0.107	[0.079-0.135] unit decrease	Affymetrix [~ 11900000] (imputed)	N
1216	chr6	82781388	82781389	rs6910919	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals	6q14.1		rs6910919-C	0.255244	1E-21		0.0967731	[0.076-0.117] decrease	Affymetrix [11014269] (imputed)	N
1216	chr6	82781388	82781389	rs6910919	32528159	Choquet H	2020-06-11	Commun Biol	A multiethnic genome-wide analysis of 44,039 individuals identifies 41 new loci associated with central corneal thickness.	Central corneal thickness	32,292 European ancestry individuals, 9,623 East Asian ancestry individuals, 1,367 Hispanic/Latino individuals, 757 African American  individuals	NA	6q14.1	FAM46A	rs6910919-?	NA	7E-27		2.95	[2.42-3.48] unit decrease	Affymetrix [5541230] (imputed)	N
1216	chr6	82781388	82781389	rs6910919	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	6q14.1	LINC01526, IBTK	rs6910919-C	0.2536	3E-20		0.15	[0.12-0.18] unit decrease	Affymetrix [~ 11900000] (imputed)	N
1216	chr6	82794593	82794594	rs1538138	29760442	Iglesias AI	2018-05-14	Nat Commun	Cross-ancestry genome-wide association analysis of corneal thickness strengthens link between complex and Mendelian eye diseases.	Central corneal thickness	17,803 European ancestry individuals, 8,107 Asian ancestry individuals	NA	6q14.1	FAM46A	rs1538138-T	0.2464	3E-6		2.1104	[1.23-2.99] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1216	chr6	82794593	82794594	rs1538138	23291589	Lu Y	2013-01-06	Nat Genet	Genome-wide association analyses identify multiple loci associated with central corneal thickness and keratoconus.	Corneal structure	13,057 European ancestry individuals, 2,538 Indian ancestry individuals, 2,542 Malay ancestry individuals, 1,883 Chinese ancestry individuals	NA	6q14.1	IBTK, FAM46A	rs1538138-T	0.25	1E-12		0.07	[0.031-0.109] unit decrease	Affymetrix, Illumina [~ 1000000] (imputed)	N
1217	chr6	82910246	82910247	rs4706938	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	6q14.1	NR	rs4706938-?	NR	3E-8				Illumina [7760689] (imputed)	N
1218	chr6	82978929	82978930	rs73479333	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interferon gamma levels	7,701 Finnish ancestry individuals	NA	6q14.1	NR	rs73479333-G		1E-6		0.1159	[0.069-0.163] SD units increase	NR [10700000] (imputed)	N
1219	chr6	83152219	83152220	rs3011823	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	6q14.1	NR	rs3011823-?	NR	2E-9				Affymetrix [NR]	N
1221	chr6	83407783	83407784	rs4997823	27515689	Kerns SL	2016-07-20	EBioMedicine	Meta-analysis of Genome Wide Association Studies Identifies Genetic Markers of Late Toxicity Following Radiotherapy for Prostate Cancer.	Response to radiotherapy in prostate cancer (toxicity, urinary frequency)	1,409 European ancestry individuals	NA	6q14.1	intergenic	rs4997823-?	0.65	2E-6		2.0408163	[1.52-2.78]	NR [~ 38000000] (imputed)	N
1221	chr6	83419691	83419692	rs2482395	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	6q14.1		rs2482395-A	NR	3E-9		0.014	[0.0095-0.0185] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1221	chr6	83425463	83425464	rs2482397	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	6q14.1		rs2482397-G	NR	2E-12		0.0147	[0.011-0.019] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1221	chr6	83426428	83426429	rs2943031	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6q14.1	NR	rs2943031-?	NR	1E-10				Affymetrix [~ 8270000] (imputed)	N
1221	chr6	83433227	83433228	rs9294260	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	6q14.1		rs9294260-?	NR	4E-14				NR [~ 8900000] (imputed)	N
1221	chr6	83447416	83447417	rs6933883	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6q14.1		rs6933883-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1221	chr6	83447812	83447813	rs7769594	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6q14.1	NR	rs7769594-?	NR	4E-10				Affymetrix [~ 8270000] (imputed)	N
1221	chr6	83447812	83447813	rs7769594	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	6q14.1	NA	rs7769594-T	0.1602	2E-12		0.0164	[0.012-0.021] unit increase	NR [~ 27400000] (imputed)	N
1221	chr6	83464916	83464917	rs6454289	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Subjective well-being	298,420 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	6q14.1	NR	rs6454289-T	0.4268	9E-6		0.013268637	[0.0074-0.0191] unit increase	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
1221	chr6	83473572	83473573	rs1040046	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		6q14.1	UBE3D	rs1040046-C	0.850588	5E-9		0.0112601	[0.0075-0.015] unit decrease	Affymetrix [12370749]	N
1222	chr6	83546245	83546246	rs62430436	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	6q14.1	NR	rs62430436-?	NR	3E-8				Illumina [7760689] (imputed)	N
1222	chr6	83615697	83615698	rs12195720	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Entorhinal cortical volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	6q14.1	UBE3D	rs12195720-?		9E-6				Illumina [4322238] (imputed)	N
1223	chr6	83648055	83648056	rs293526	26891255	Jung ES	2016-02-18	Inflamm Bowel Dis	HLA-C*01 is a Risk Factor for Crohn's Disease.	Crohn's disease	275 Korean ancestry cases, 2,369 Korean ancestry controls	242 Korean ancestry cases, 1,066 Korean ancestry controls	6q14.1	UBE3D	rs293526-T	0.82	2E-11		2.1276596	[1.69-2.63]	Affymetrix [3387207] (imputed)	N
1223	chr6	83707716	83707717	rs62419196	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6q14.1		rs62419196-?	NR	7E-21				NR [~ 8900000] (imputed)	N
1223	chr6	83720301	83720301	rs141107703	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	6q14.1		rs141107703-AT	NR	4E-15		0.0181	[0.014-0.023] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1223	chr6	83740399	83740400	rs6454314	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6q14.1		rs6454314-?	NR	7E-30		0.0247528	[0.02-0.029] unit increase	Affymetrix [20259828] (imputed)	N
1223	chr6	83740399	83740400	rs6454314	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	6q14.1	UBE3D	rs6454314-G	0.315541	5E-13		0.0257014	[0.019-0.033] unit increase	NR [17166351] (imputed)	N
1223	chr6	83740399	83740400	rs6454314	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	6q14.1	UBE3D	rs6454314-G	0.31553	5E-12	(men)	0.040065	[0.029-0.051] unit increase	NR [17166351] (imputed)	N
1223	chr6	83745017	83745018	rs6938070	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA		UBE3D	rs6938070-T	0.300671	2E-33		0.0240497	[0.02-0.028] unit increase	NR [13737936] (imputed)	N
1224	chr6	83762194	83762195	rs9359555	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	6q14.1		rs9359555-?	NR	9E-28				NR [~ 8900000] (imputed)	N
1224	chr6	83773048	83773049	rs12153819	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	6q14.1		rs12153819-?	NR	8E-9		0.0178178	[0.012-0.024] unit decrease	NR [6912294] (imputed)	N
1224	chr6	83789797	83789798	rs4470825	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	6q14.1	NR	rs4470825-G	NR	3E-7		1.0526316	[NR]	Illumina [7158791] (imputed)	N
1225	chr6	83908421	83908422	rs117956901	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	6q14.1	NR	rs117956901-?	NR	1E-7		4949.0933	NR unit decrease	Illumina [2379855]	N
1225	chr6	83913616	83913617	rs2143891	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	6q14.2		rs2143891-C	0.43	8E-11		6.51	z score increase	Affymetrix [9061022] (imputed)	N
1225	chr6	83915413	83915414	rs9444043	31991592	Coltell O	2020-01-24	Nutrients	Genome-Wide Association Study for Serum Omega-3 and Omega-6 Polyunsaturated Fatty Acids: Exploratory Analysis of the Sex-Specific Effects and Dietary Modulation in Mediterranean Subjects with Metabolic Syndrome.	Serum polyunsaturated fatty acid concentration x Mediterranean diet adherence interaction in metabolic syndrome	248 Mediterranean individuals with low adherence to Mediterranean diet, 178 Mediterranean individuals with high adherence to Mediterranean diet	NA	6q14.2	intergenic	rs9444043-A	0.495008	4E-6	(omega-3 PUFA)			Illumina [621723]	N
1225	chr6	83916068	83916069	rs13219666	31991592	Coltell O	2020-01-24	Nutrients	Genome-Wide Association Study for Serum Omega-3 and Omega-6 Polyunsaturated Fatty Acids: Exploratory Analysis of the Sex-Specific Effects and Dietary Modulation in Mediterranean Subjects with Metabolic Syndrome.	Serum polyunsaturated fatty acid concentration x Mediterranean diet adherence interaction in metabolic syndrome	248 Mediterranean individuals with low adherence to Mediterranean diet, 178 Mediterranean individuals with high adherence to Mediterranean diet	NA	6q14.2	intergenic	rs13219666-C	0.14357	1E-6	(omega-3 PUFA)			Illumina [621723]	N
1225	chr6	83918130	83918131	rs2324229	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Platelet-derived growth factor BB levels	8,293 Finnish ancestry individuals	NA	6q14.2	NR	rs2324229-C		3E-8		0.0894	[0.058-0.121] SD units decrease	NR [10700000] (imputed)	N
1225	chr6	83953275	83953276	rs1180221	33169155	Bigdeli TB	2020-11-10	Schizophr Bull	Genome-Wide Association Studies of Schizophrenia and Bipolar Disorder in a Diverse Cohort of US Veterans.	Bipolar disorder	24,267 European ancestry cases, 3,027 African American cases, 1,032 Latino cases, 79,492 European ancestry controls, 8,097 African American controls, 3,090 Latino controls	NA	6q14.2	ME1	rs1180221-T	NR	3E-9		1.09	[1.07-1.11]	Affymetrix [up to 49134253] (imputed)	N
1225	chr6	83956723	83956724	rs1180204	31991592	Coltell O	2020-01-24	Nutrients	Genome-Wide Association Study for Serum Omega-3 and Omega-6 Polyunsaturated Fatty Acids: Exploratory Analysis of the Sex-Specific Effects and Dietary Modulation in Mediterranean Subjects with Metabolic Syndrome.	Serum polyunsaturated fatty acid concentration x Mediterranean diet adherence interaction in metabolic syndrome	248 Mediterranean individuals with low adherence to Mediterranean diet, 178 Mediterranean individuals with high adherence to Mediterranean diet	NA	6q14.2	MEI	rs1180204-?	NR	5E-7	(docosahexaenoic fatty acid)			Illumina [621723]	N
1225	chr6	83967453	83967454	rs1180187	31991592	Coltell O	2020-01-24	Nutrients	Genome-Wide Association Study for Serum Omega-3 and Omega-6 Polyunsaturated Fatty Acids: Exploratory Analysis of the Sex-Specific Effects and Dietary Modulation in Mediterranean Subjects with Metabolic Syndrome.	Serum polyunsaturated fatty acid concentration x Mediterranean diet adherence interaction in metabolic syndrome	248 Mediterranean individuals with low adherence to Mediterranean diet, 178 Mediterranean individuals with high adherence to Mediterranean diet	NA	6q14.2	ME1	rs1180187-?	NR	9E-6	(omega-6:omega-3 ratio)			Illumina [621723]	N
1226	chr6	84089190	84089191	rs17255340	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Platelet-derived growth factor BB levels	8,293 Finnish ancestry individuals	NA	6q14.2	NR	rs17255340-G		3E-6		0.0854	[0.05-0.121] SD units increase	NR [10700000] (imputed)	N
1226	chr6	84101326	84101327	rs2875343	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	6q14.2	NR	rs2875343-C	0.3124	3E-11				NR [9056863] (imputed)	N
1226	chr6	84105135	84105136	rs185262229	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	6q14.2	ME1	rs185262229-T	0.991489	1E-8		0.082718	[0.054-0.111] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1226	chr6	84119360	84119361	rs3798890	31991592	Coltell O	2020-01-24	Nutrients	Genome-Wide Association Study for Serum Omega-3 and Omega-6 Polyunsaturated Fatty Acids: Exploratory Analysis of the Sex-Specific Effects and Dietary Modulation in Mediterranean Subjects with Metabolic Syndrome.	Serum polyunsaturated fatty acid concentration x Mediterranean diet adherence interaction in metabolic syndrome	248 Mediterranean individuals with low adherence to Mediterranean diet, 178 Mediterranean individuals with high adherence to Mediterranean diet	NA	6q14.2	ME1	rs3798890-A	0.193091	2E-7	(omega-3 PUFA)			Illumina [621723]	N
1227	chr6	84173027	84173028	rs12195417	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	6q14.2	NR	rs12195417-C	NR	5E-6		1.0526316	[NR]	Illumina [7158791] (imputed)	N
1227	chr6	84174400	84174401	rs12203860	31991592	Coltell O	2020-01-24	Nutrients	Genome-Wide Association Study for Serum Omega-3 and Omega-6 Polyunsaturated Fatty Acids: Exploratory Analysis of the Sex-Specific Effects and Dietary Modulation in Mediterranean Subjects with Metabolic Syndrome.	Serum polyunsaturated fatty acid concentration x Mediterranean diet adherence interaction in metabolic syndrome	248 Mediterranean individuals with low adherence to Mediterranean diet, 178 Mediterranean individuals with high adherence to Mediterranean diet	NA	6q14.2	intergenic	rs12203860-G	0.279952	7E-7	(omega-3 PUFA)			Illumina [621723]	N
1227	chr6	84175551	84175552	rs6454330	31991592	Coltell O	2020-01-24	Nutrients	Genome-Wide Association Study for Serum Omega-3 and Omega-6 Polyunsaturated Fatty Acids: Exploratory Analysis of the Sex-Specific Effects and Dietary Modulation in Mediterranean Subjects with Metabolic Syndrome.	Serum polyunsaturated fatty acid concentration x Mediterranean diet adherence interaction in metabolic syndrome	248 Mediterranean individuals with low adherence to Mediterranean diet, 178 Mediterranean individuals with high adherence to Mediterranean diet	NA	6q14.2	intergenic	rs6454330-C	0.217452	8E-7	(omega-3 PUFA)			Illumina [621723]	N
1227	chr6	84196789	84196790	rs500891	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Platelet-derived growth factor BB levels	8,293 Finnish ancestry individuals	NA	6q14.2	NR	rs500891-G		8E-6		0.0832	[0.047-0.12] SD units increase	NR [10700000] (imputed)	N
1227	chr6	84210637	84210638	rs1171121	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Face memory	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	6q14.2	PRSS35	rs1171121-C	NR	9E-6		0.15453023	[0.091-0.218] unit decrease	Illumina [> 6200000] (imputed)	N
1227	chr6	84226594	84226595	rs1171113	23092984	Goes FS	2012-10-23	Transl Psychiatry	Genome-wide association of mood-incongruent psychotic bipolar disorder.	Bipolar disorder with mood-incongruent psychosis	2,196 European and other ancestry cases, 8,148 European and other ancestry controls	NA	6q14.2	SNAP91, PRSS35	rs1171113-C	NR	1E-7		1.23	[NR]	Affymetrix, Illumina [~ 2500000] (imputed)	N
1227	chr6	84227645	84227646	rs1171114	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA			rs1171114-?	NR	1E-7				NR [~ 8900000] (imputed)	N
1227	chr6	84234143	84234144	rs3812141	26031901	Dahlin A	2015-06-02	Pharmacogenomics J	Genome-wide association study of leukotriene modifier response in asthma.	Response to zileuton treatment in asthma (FEV1 change interaction)	160 European and other ancestry zileuton-treated cases, 144 European and other ancestry placebo-controlled cases	149 European and other ancestry zileuton-treated cases, 73 European and other ancestry placebo-controlled cases	6q14.2	PRSS35	rs3812141-?	NR	8E-7	(Additive model)	0.5	unit decrease	Illumina [542562]	N
1228	chr6	84279921	84279922	rs9350984	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Bipolar disorder (MTAG)	at least 20,352 European ancestry cases, at least 31,358 European ancestry controls	NA	6q14.2	NR	rs9350984-T	0.4463	4E-8		0.06007398	[0.039-0.082] unit decrease	NR [NR]	N
1228	chr6	84280274	84280275	rs7752643	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6q14.2	PRSS35, SNAP91	rs7752643-C		5E-8		1.06	[1.03-1.08]	Affymetrix, Illumina [NR]	N
1228	chr6	84283732	84283733	rs2016358	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	67,764 individuals	NA	6q14.2	NR	rs2016358-?		7E-9				NR [8377093]	N
1228	chr6	84286476	84286477	rs11756746	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (late vs. average onset voice breaking)	11,334 European ancestry late onset individuals, 172,138 European ancestry average onset individuals	NA	6q14.2		rs11756746-A	NR	2E-7		0.00473156	[0.0029-0.0065] years increase	NR [7400000] (imputed)	N
1228	chr6	84292499	84292500	rs116922412	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	6q14.2	NR	rs116922412-A	NR	7E-6		0.3241	[0.18-0.47] unit increase	Illumina [11133794] (imputed)	N
1228	chr6	84294485	84294486	rs9283801	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Bipolar disorder (MTAG)	1,450,972 European ancestry individuals	NA			rs9283801-?	NR	9E-9				NR [2625067]	N
1228	chr6	84306855	84306856	rs4706184	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	6q14.2		rs4706184-A	0.45	7E-21		9.37	z score increase	Affymetrix [9061022] (imputed)	N
1228	chr6	84307327	84307328	rs2207944	32060260	Campos AI	2020-02-14	Nat Commun	Insights into the aetiology of snoring from observational and genetic investigations in the UK Biobank.	Snoring	61,792 British ancestry female cases, 156,554 British ancestry female controls	NA	6q14.2	NR	rs2207944-T	NR	2E-6		0.00659	[0.0039-0.0093] unit decrease	NR [11010159] (imputed)	N
1228	chr6	84307327	84307328	rs2207944	32060260	Campos AI	2020-02-14	Nat Commun	Insights into the aetiology of snoring from observational and genetic investigations in the UK Biobank.	Snoring	152,302 British ancestry cases, 256,015 British ancestry controls	NA	6q14.2	NR	rs2207944-T	NR	2E-8		0.00594528	[0.0039-0.008] unit decrease	NR [11010159] (imputed)	N
1228	chr6	84307327	84307328	rs2207944	32060260	Campos AI	2020-02-14	Nat Commun	Insights into the aetiology of snoring from observational and genetic investigations in the UK Biobank.	Snoring	151,836 British ancestry cases, 255,230 British ancestry controls	NA	6q14.2	NR	rs2207944-T	NR	3E-7	(adjusted for BMI)	0.00541	[0.0034-0.0075] unit decrease	NR [11010159] (imputed)	N
1228	chr6	84307725	84307726	rs2224195	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	6q14.2	NR	rs2224195-?	NR	3E-6		0.0081575	[0.0047-0.0116] unit decrease	Affymetrix [805426] (imputed)	N
1228	chr6	84313800	84313801	rs13215351	33979322	Currant H	2021-05-12	PLoS Genet	Genetic variation affects morphological retinal phenotypes extracted from UK Biobank optical coherence tomography images.	Retinal nerve fibre layer thickness or ganglion cell inner plexiform layer thickness (MTAG)	31,434 European ancestry individuals	NA	6q14.2	NR	rs13215351-T	0.25	1E-9		0.33	[0.23-0.43] unit decrease	Affymetrix [9231066] (imputed)	N
1228	chr6	84313800	84313801	rs13215351	33979322	Currant H	2021-05-12	PLoS Genet	Genetic variation affects morphological retinal phenotypes extracted from UK Biobank optical coherence tomography images.	Ganglion cell inner plexiform layer (GCIPL) thickness	31,434 European ancestry individuals	NA	6q14.2	NR	rs13215351-T	0.25	1E-9		0.33	[0.23-0.43] unit decrease	Affymetrix [9231066] (imputed)	N
1228	chr6	84317532	84317533	rs7752421	34108613	Ivarsdottir EV	2021-06-09	Commun Biol	The genetic architecture of age-related hearing impairment revealed by genome-wide association analysis.	Age-related hearing impairment	121,934 European ancestry cases, 591,699 European ancestry controls	NA	6q14.2	SNAP91	rs7752421-T	43.36	1E-8	(additive)	1.03	[NR]	Affymetrix, Illumina [46900000] (imputed)	N
1228	chr6	84322157	84322158	rs12193842	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	6q14.2		rs12193842-?	NR	5E-10				NR [~ 8900000] (imputed)	N
1228	chr6	84325183	84325184	rs12193281	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	6q14.2	NR	rs12193281-C		5E-14		0.09	[0.07-0.11] unit increase	NR [NR]	N
1228	chr6	84325183	84325184	rs12193281	25387706	Vaidyanathan U	2014-12-01	Psychophysiology	Heritability and molecular genetic basis of electrodermal activity: a genome-wide association study.	Electrodermal activity	Up to 4,424 European ancestry twins and their parents	NA	6q14.2	SNAP91	rs12193281-?	NR	4E-6	(SCL)	0.055	[0.031-0.079] unit increase	Illumina [527829]	N
1228	chr6	84328659	84328660	rs3798869	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	6q14.2	SNAP91, PRSS35	rs3798869-?		8E-11				NR [6786993] (imputed)	N
1228	chr6	84328659	84328660	rs3798869	31268507	Periyasamy S	2019-07-03	JAMA Psychiatry	Association of Schizophrenia Risk With Disordered Niacin Metabolism in an Indian Genome-wide Association Study.	Schizophrenia	816 Indian ancestry cases, 900 Indian ancestry controls, 505 Indian ancestry cases and 871 Indian ancestry controls from 405 families, up to 36,989 European and unknown ancestry cases, up to 113,075 European and unknown ancestry controls	NA	6q14.2	NR	rs3798869-?	NR	1E-10				Illumina [up to 5582932] (imputed)	N
1228	chr6	84328659	84328660	rs3798869	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	6q14.2	SNAP91	rs3798869-G	NR	1E-9	(EA)	1.069	[1.05-1.09]	Illumina [6627481] (imputed)	N
1228	chr6	84328659	84328660	rs3798869	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	6q14.2	NR	rs3798869-G	NR	9E-10		1.0638298	[NR]	Illumina [7158791] (imputed)	N
1228	chr6	84339294	84339295	rs217339	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6q14.2		rs217339-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1228	chr6	84344688	84344689	rs217331	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	6q14.2	SNAP91	rs217331-G	NR	3E-12		1.0672358	[1.05-1.09]	Illumina [6627481] (imputed)	N
1228	chr6	84344688	84344689	rs217331	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	6q14.2	MRAP2, SNAP91	rs217331-G	NR	2E-13		1.0706638	[1.05-1.09]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1228	chr6	84356125	84356126	rs217320	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Schizophrenia (MTAG)	940,613 European ancestry individuals	NA			rs217320-?	NR	2E-9				NR [2625067]	N
1228	chr6	84356797	84356797	rs34565370	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	6q14.2	SNAP91	rs34565370-?	NR	4E-10		0.434	[0.3-0.57] unit increase	Affymetrix [11100000] (imputed)	N
1228	chr6	84373057	84373058	rs60730	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Bipolar disorder (MTAG)	65,682 individuals	NA	6q14.2	NR	rs60730-?		1E-9				NR [520857]	N
1228	chr6	84377984	84377985	rs217300	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	6q14.2	NR	rs217300-A	0.432	3E-8		0.00601439	[0.0039-0.0081] unit increase	NR [9732723] (imputed)	N
1228	chr6	84380491	84380492	rs1118543	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	6q14.2	PRSS35, SNAP91	rs1118543-?		2E-26				Affymetrix, Illumina [NR] (imputed)	N
1228	chr6	84387904	84387905	rs91894	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	6q14.2	SNAP91	rs91894-?	NR	7E-9		0.011890353	[0.0079-0.0159] unit decrease	NR [7306098]	N
1228	chr6	84401806	84401807	rs217289	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Schizophrenia (MTAG)	at least 33,640 European ancestry cases, at least 43,456 European ancestry controls	NA	6q14.2	NR	rs217289-A	0.4453	3E-9		0.06537742	[0.044-0.087] unit decrease	NR [NR]	N
1228	chr6	84401806	84401807	rs217289	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	6q14.2	NR	rs217289-?	NR	1E-13		1.066735	[1.05-1.08]	Affymetrix, Illumina [12447948] (imputed)	N
1228	chr6	84407465	84407466	rs217287	29483656	Pardinas AF	2018-02-26	Nat Genet	Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.	Schizophrenia	40,675 European ancestry cases, 64,643 European ancestry controls	1,651 European ancestry cases, 4,111 cases, 142,717 European ancestry controls, 11,507 controls	6q14.2	SNAP91	rs217287-?	NR	1E-12		1.072	[1.05-1.09]	Illumina [8000000] (imputed)	N
1229	chr6	84436319	84436320	rs182426527	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	Intrinsic epigenetic age acceleration	6,148 African American individuals	NA	6q14.2	NR	rs182426527-T	0.9882	1E-8		2.6213	[1.72-3.52] unit decrease	Affymetrix, Illumina [12989965] (imputed)	N
1230	chr6	84589525	84589526	rs72907644	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		CYB5R4	rs72907644-?	NR	3E-10	(female)	3.14365	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1230	chr6	84589525	84589526	rs72907644	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Bacterial meningitis	842 European ancestry cases, 82,778 European ancestry controls	NA		NR	rs72907644-?	NR	4E-6		0.9802	[0.49-1.47] unit decrease	Illumina [at least 560000] (imputed)	N
1231	chr6	84695891	84695892	rs215974	26528553	Davenport ER	2015-11-03	PLoS One	Genome-Wide Association Studies of the Human Gut Microbiota.	Gut microbiome composition (winter)	93 Hutterite individuals	NA	6q14.2	NR	rs215974-?		7E-7	(order_Burkholderiales)	0.8410917	[0.48-1.21] unit increase	Affymetrix [211319]	N
1231	chr6	84701762	84701763	rs215971	28322283	Chibnik LB	2017-03-21	Mol Psychiatry	Susceptibility to neurofibrillary tangles: role of the PTPRD locus and limited pleiotropy with other neuropathologies.	Dementia with Lewy bodies	195 European ancestry cases, 714 European ancestry controls	369 individuals	6q14.2		rs215971-T	0.45	1E-6	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1231	chr6	84711647	84711648	rs144648114	32141793	Garman L	2020-03-06	Ocul Immunol Inflamm	Genome-Wide Association Study of Ocular Sarcoidosis Confirms HLA Associations and Implicates Barrier Function and Autoimmunity in African Americans.	Ocular sarcoidosis	260 African American cases, 1,551 African American controls	NA	6q14.2	NR	rs144648114-A	NR	6E-6		3.092	[1.90-5.04]	Illumina [13976150] (imputed)	N
1231	chr6	84713291	84713292	rs72907660	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6q14.2	NR	rs72907660-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
1231	chr6	84714135	84714136	rs215970	28360221	Boger CA	2017-03-30	J Am Soc Nephrol	NFAT5 and SLC4A10 Loci Associate with Plasma Osmolality.	Blood osmolality (transformed sodium)	45,889 European ancestry individuals, up to 8,765 Asian Indian ancestry individuals, up to 7,215 African ancestry individuals	17,637 European ancestry individuals	6q14.2	NR	rs215970-A	0.97	2E-6	(Asian)	0.36	[0.21-0.51] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1231	chr6	84740395	84740396	rs2480181	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	6-month creatinine clearance change response to tenofovir treatment in HIV infection (treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	6q14.2	NR	rs2480181-?		5E-6	(African)			Illumina [~ 5140000] (imputed)	N
1231	chr6	84772468	84772469	rs2480192	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Whole brain grey matter density	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	6q14.2	MRAP2	rs2480192-?		4E-6				Illumina [4322238] (imputed)	N
1232	chr6	84841248	84841249	rs141458884	31504550	Bradfield JP	2019-07-05	Hum Mol Genet	A Trans-ancestral Meta-Analysis of Genome-Wide Association Studies Reveals Loci Associated with Childhood Obesity.	Childhood obesity	8,613 European ancestry cases, 3,213 African American cases, 69 Moroccan ancestry cases, 986 Hispanic/Latino cases, 124 East Asian ancestry cases, 12,696 European ancestry controls, 1,392 African American controls, 64 Moroccan ancestry controls, 993 Hispanic/Latino controls, 454 East Asian ancestry controls	NA	6q14.2	NR	rs141458884-C	NR	1E-6	(EA)	0.1433	[0.086-0.201] unit increase	Affymetrix, Illumina [up to 15123508] (imputed)	N
1232	chr6	84863962	84863963	rs2497155	27296613	Salinas YD	2016-06-13	BMC Genet	Multiethnic genome-wide association study identifies ethnic-specific associations with body mass index in Hispanics and African Americans.	Body mass index	1,235 Hispanic individuals, 706 Asian ancestry individuals, 1,549 African American individuals, 2,395 European ancestry individuals	3,379 Hispanic individuals, 6,871 African American individuals	6q14.2	NR	rs2497155-T		4E-6	(European)	1.05	[0.61-1.49] kg/m2 decrease	Affymetrix [up to 871948]	N
1232	chr6	84885190	84885191	rs1359246	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6q14.2	NR	rs1359246-A	0.03484	7E-9	(TPT1)	0.09651	NR unit increase	Illumina [1671387] (imputed)	N
1233	chr6	84978032	84978033	rs1535822	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	6q14.3		rs1535822-?	NR	9E-9				NR [~ 8900000] (imputed)	N
1233	chr6	85042872	85042873	rs6942027	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6q14.3	NR	rs6942027-?	NR	1E-10				Affymetrix [~ 8270000] (imputed)	N
1234	chr6	85088845	85088846	rs7768862	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6q14.3	NR	rs7768862-A	0.5075	6E-6	(EA)	0.028	[0.016-0.04] unit decrease	Illumina [~ 11800000] (imputed)	N
1234	chr6	85088901	85088902	rs9444166	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6q14.3	NR	rs9444166-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
1234	chr6	85098236	85098237	rs1010437	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	6q14.3		rs1010437-A	0.32	8E-12		6.84	z score increase	Affymetrix [9061022] (imputed)	N
1234	chr6	85108453	85108454	rs2023384	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	6q14.3		rs2023384-T	0.4	4E-8		5.49	z score increase	Affymetrix [9061022] (imputed)	N
1234	chr6	85108453	85108454	rs2023384	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	6q14.3	NR	rs2023384-T	0.4048	2E-9				NR [9056863] (imputed)	N
1234	chr6	85110592	85110593	rs9344390	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	6q14.3		rs9344390-?	NR	7E-9				NR [9705931] (imputed)	N
1234	chr6	85114880	85114881	rs2143787	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6q14.3	RP1-90L14.1	rs2143787-C	NR	7E-10		0.020825	[0.014-0.027] unit decrease	Affymetrix [323858] (imputed)	N
1234	chr6	85114880	85114881	rs2143787	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6q14.3	RP1-90L14.1	rs2143787-C	NR	6E-10		0.0209915	[0.014-0.028] unit decrease	Affymetrix [127266] (imputed)	N
1234	chr6	85118987	85118988	rs9449896	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Monobrow	69,284 European ancestry individuals	NA	6q14.3	KIAA1009, TBX18	rs9449896-?	NR	2E-19		0.044	[0.053-0.034] unit decrease	Illumina [12039491] (imputed)	N
1234	chr6	85119726	85119727	rs9362048	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6q14.3	C6orf117	rs9362048-?	NR	5E-6	(PC 36:2)	0.2493813	[0.14-0.36] unit increase	Affymetrix [at least 2500000] (imputed)	N
1234	chr6	85153039	85153040	rs72898901	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	6q14.3		rs72898901-A	0.13	1E-42		13.69	z score increase	Affymetrix [9061022] (imputed)	N
1234	chr6	85158208	85158209	rs9449914	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6q14.3	NR	rs9449914-?	NR	9E-10				Affymetrix [~ 8270000] (imputed)	N
1234	chr6	85166027	85166028	rs17579636	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6q14.3	RP1-90L14.1	rs17579636-T	NR	5E-8		0.0225426	[0.014-0.031] unit decrease	Affymetrix [323858] (imputed)	N
1234	chr6	85166027	85166028	rs17579636	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6q14.3	RP1-90L14.1	rs17579636-T	NR	2E-8		0.0233671	[0.015-0.031] unit decrease	Affymetrix [127266] (imputed)	N
1234	chr6	85178267	85178268	rs9362054	25364816	Awata T	2014-11-03	PLoS One	A genome-wide association study for diabetic retinopathy in a Japanese population: potential association with a long intergenic non-coding RNA.	Diabetic retinopathy in type 2 diabetes	205 Japanese ancestry cases, 241 Japanese ancestry controls	632 Japanese ancestry cases, 908 Japanese ancestry controls	6q14.3	CEP162, TBX18, RP1-90L14.1, KIAA1009, RP11-132M7.1	rs9362054-T	0.291	1E-6		1.4	[NR]	Affymetrix [614216]	N
1235	chr6	85209045	85209046	rs9353192	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6q14.3	NR	rs9353192-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1235	chr6	85211665	85211666	rs13193461	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6q14.3	RP1-90L14.1	rs13193461-T	NR	1E-9		0.0253006	[0.017-0.033] unit increase	Affymetrix [323858] (imputed)	N
1235	chr6	85211665	85211666	rs13193461	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6q14.3	RP1-90L14.1	rs13193461-T	NR	3E-10		0.0260906	[0.018-0.034] unit increase	Affymetrix [127266] (imputed)	N
1235	chr6	85211665	85211666	rs13193461	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6q14.3	RP1-90L14.1	rs13193461-T	NR	3E-8		0.0227793	[0.015-0.031] unit increase	Affymetrix [321114] (imputed)	N
1235	chr6	85219077	85219078	rs36114380	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	6q14.3	intergenic	rs36114380-A	0.8741	3E-8		0.1665	[0.11-0.23] mmHg increase	Affymetrix [NR] (imputed)	N
1235	chr6	85219077	85219078	rs36114380	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Pulse pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	6q14.3	chr6mb85	rs36114380-G	0.134367627	3E-7		0.2407	[0.15-0.33] unit decrease	Affymetrix [~ 9800000] (imputed)	N
1235	chr6	85224952	85224953	rs13199610	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	6q14.3		rs13199610-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1235	chr6	85229324	85229325	rs4269342	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	6q14.3	NR	rs4269342-C	NR	4E-6		0.0793	[0.046-0.113] unit increase	Illumina [11133794] (imputed)	N
1235	chr6	85232897	85232898	rs4510639	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6q14.3	KIAA1009	rs4510639-?	NR	5E-6	(DAG 34:1)	0.17197964	[0.098-0.246] unit increase	Affymetrix [at least 2500000] (imputed)	N
1235	chr6	85232897	85232898	rs4510639	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6q14.3	KIAA1009	rs4510639-?	NR	4E-8	(DAG 36:1)	0.21046562	[0.14-0.29] unit increase	Affymetrix [at least 2500000] (imputed)	N
1235	chr6	85232897	85232898	rs4510639	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6q14.3	KIAA1009	rs4510639-?	NR	3E-7	(TAG 52:1)	0.19318885	[0.12-0.27] unit increase	Affymetrix [at least 2500000] (imputed)	N
1235	chr6	85232897	85232898	rs4510639	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6q14.3	KIAA1009	rs4510639-?	NR	3E-6	(TAG 50:3)	0.17576145	[0.1-0.25] unit increase	Affymetrix [at least 2500000] (imputed)	N
1235	chr6	85232897	85232898	rs4510639	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6q14.3	KIAA1009	rs4510639-?	NR	2E-7	(DAG 36:2)	0.20131776	[0.13-0.28] unit increase	Affymetrix [at least 2500000] (imputed)	N
1235	chr6	85274106	85274106	rs746406027	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6q14.3		rs746406027-?	NR	2E-11		0.0175685	[0.013-0.022] unit increase	Affymetrix [20259828] (imputed)	N
1235	chr6	85274529	85274530	rs62448923	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	6q14.3		rs62448923-?	NR	8E-16				NR [~ 8900000] (imputed)	N
1235	chr6	85283252	85283253	rs60255247	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	NA	6q14.3	TBX18	rs60255247-A	0.8875	5E-14		0.2491	[0.18-0.31] unit increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1235	chr6	85283674	85283675	rs57865802	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6q14.3	NR	rs57865802-?	NR	4E-12				Affymetrix [~ 8270000] (imputed)	N
1235	chr6	85308244	85308245	rs57170789	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6q14.3	NR	rs57170789-?	NR	5E-12				Affymetrix [~ 8270000] (imputed)	N
1236	chr6	85369727	85369727	rs35166681	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	6q14.3	intergenic	rs35166681-T	0.841	2E-16		0.0214	[0.016-0.026] unit decrease	Affymetrix [18391927] (imputed)	N
1236	chr6	85373790	85373791	rs72908667	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	6q14.3		rs72908667-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1236	chr6	85391567	85391568	rs9341990	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	315,284 European ancestry male individuals	NA	6q14.3	NR	rs9341990-A	0.4131	9E-17		0.0151	[0.012-0.019] unit increase	NR [~ 27400000] (imputed)	N
1236	chr6	85393661	85393662	rs77055604	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	6q14.3		rs77055604-A	NR	7E-11		0.0228	[0.016-0.03] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
1236	chr6	85396118	85396119	rs9362083	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6q14.3	TBX18	rs9362083-T	NR	1E-8		0.0180307	[0.012-0.024] unit increase	Affymetrix [323858] (imputed)	N
1236	chr6	85396118	85396119	rs9362083	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6q14.3	TBX18	rs9362083-T	NR	2E-9		0.0189473	[0.013-0.025] unit increase	Affymetrix [127266] (imputed)	N
1236	chr6	85396118	85396119	rs9362083	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6q14.3	NR	rs9362083-?	NR	8E-17				Affymetrix [~ 8270000] (imputed)	N
1236	chr6	85396118	85396119	rs9362083	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6q14.3	NR	rs9362083-?	NR	4E-21				Affymetrix [~ 8270000] (imputed)	N
1236	chr6	85396118	85396119	rs9362083	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	6q14.3	NA	rs9362083-A	0.5866	8E-11		0.0117	[0.0082-0.0152] unit decrease	NR [~ 27400000] (imputed)	N
1236	chr6	85416147	85416147	rs201491954	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	6q14.3		rs201491954-AT	NR	3E-14		0.0103	[0.0078-0.0128] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1236	chr6	85427972	85427973	rs9344420	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	6q14.3		rs9344420-?	NR	1E-17				NR [~ 8900000] (imputed)	N
1236	chr6	85434490	85434491	rs9362097	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	6q14.3	NR	rs9362097-G	0.46	1E-17		0.016	[0.012-0.02] unit increase	Affymetrix [2446094] (imputed)	N
1236	chr6	85434490	85434491	rs9362097	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	6q14.3	NR	rs9362097-G	0.46	5E-8				Affymetrix [2446094] (imputed)	N
1236	chr6	85441330	85441330	rs34981280	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6q14.3	TBX18	rs34981280-T	NR	6E-11		0.0187398	[0.013-0.024] unit increase	Affymetrix [321114] (imputed)	N
1236	chr6	85448102	85448103	rs761391	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6q14.3		rs761391-?	NR	4E-24				NR [~ 8900000] (imputed)	N
1237	chr6	85471880	85471880	rs60538128	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6q14.3	TBX18	rs60538128-GA	NR	2E-8		0.0176499	[0.011-0.024] unit decrease	Affymetrix [127266] (imputed)	N
1237	chr6	85471880	85471880	rs60538128	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6q14.3	TBX18	rs60538128-GA	NR	2E-9		0.0187816	[0.013-0.025] unit decrease	Affymetrix [321114] (imputed)	N
1237	chr6	85483285	85483286	rs2024586	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	6q14.3	NR	rs2024586-T	0.233863	2E-11		0.024458	[0.017-0.032] unit decrease	NR [19129689] (imputed)	N
1237	chr6	85574203	85574203	rs200814993	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interferon gamma-induced protein 10 levels	3,685 Finnish ancestry individuals	NA	6q14.3	NR	rs200814993-C		9E-6		0.3669	[0.21-0.53] SD units increase	NR [10700000] (imputed)	N
1237	chr6	85582395	85582396	rs17692425	35132056	Mitchell BL	2022-02-07	Nat Commun	Genome-wide association meta-analysis identifies 29 new acne susceptibility loci.	acne vulgaris	20,165 European ancestry cases, 595,231 European ancestry controls	NA	6q14.3	NR	rs17692425-C	0.3443	4E-8		1.07	[1.05-1.1]	Affymetrix, Illumina [7072771] (imputed)	N
1238	chr6	85708585	85708585	rs112411726	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 15)	4,680 European ancestry individuals	3,566 European ancestry individuals	6q14.3		rs112411726-AATGTG	0.379136533	1E-9				Illumina [7417619] (imputed)	N
1238	chr6	85709487	85709488	rs112938313	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6q14.3	NR	rs112938313-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
1238	chr6	85709487	85709488	rs112938313	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	6q14.3		rs112938313-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1238	chr6	85712375	85712376	rs78423498	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume x hypertension interaction (2df)	46,055 European ancestry individuals, 2,469 African American individuals	NA	6q14.3	TBX18	rs78423498-T	0.934	1E-5				Affymetrix, Illumina [9900000] (imputed)	N
1238	chr6	85712375	85712376	rs78423498	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume x hypertension interaction (2df)	46,055 European ancestry individuals	NA	6q14.3	TBX18	rs78423498-T	0.934	1E-5				Affymetrix, Illumina [9900000] (imputed)	N
1238	chr6	85712375	85712376	rs78423498	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume (adjusted for hypertension)	46,055 European ancestry individuals	NA	6q14.3	TBX18	rs78423498-T	0.934	6E-6		0.0528	[0.03-0.076] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1238	chr6	85712375	85712376	rs78423498	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	48,454 European ancestry individuals	NA	6q14.3	TBX18	rs78423498-T	0.934	1E-6		0.0563	[0.034-0.079] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1238	chr6	85712375	85712376	rs78423498	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	2,516 African American individuals, 48,454 European ancestry individuals	NA	6q14.3	TBX18	rs78423498-T	0.934	2E-6		0.0557	[0.033-0.079] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1238	chr6	85715954	85715955	rs62422907	30833571	Wiberg A	2019-03-04	Nat Commun	A genome-wide association analysis identifies 16 novel susceptibility loci for carpal tunnel syndrome.	Carpal tunnel syndrome	12,312 European ancestry cases, 389,344 European ancestry controls	NA	6q14.3	Intergenic	rs62422907-G	0.887	2E-9		1.13	[1.09-1.18]	Affymetrix [84000000] (imputed)	N
1239	chr6	85729426	85729427	rs9450112	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	6q14.3		rs9450112-?	NR	8E-10				NR [~ 8900000] (imputed)	N
1239	chr6	85729958	85729959	rs117527287	33201861	Lahm H	2020-11-17	J Clin Invest	Congenital heart disease risk loci identified by genome-wide association study in European patients.	Congenital heart disease (anomalies of thoracic arteries and veins)	486 European ancestry cases, 8,486 European ancestry controls	NA	6q14.3		rs117527287-?		6E-9		3.63	[2.34-5.58]	Affymetrix, Illumina [9216527] (imputed)	N
1239	chr6	85764936	85764937	rs1923587	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	6q14.3	NR	rs1923587-?	NR	7E-17				Affymetrix [NR]	N
1239	chr6	85827523	85827524	rs1359602	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	6q14.3	NR	rs1359602-C	0.355528	2E-14		0.0246524	[0.018-0.031] unit increase	NR [19129689] (imputed)	N
1239	chr6	85833781	85833782	rs55634002	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Ischemic stroke (cardioembolic)	174 Indian ancestry cases, 2,154 Indian ancestry controls	NA	6q14.3		rs55634002-?	NR	1E-5		1.1157211	[1.06293180392118-1.17113212567453]	Illumina [up to 7827597] (imputed)	N
1239	chr6	85851314	85851315	rs566773279	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	Height	19,965 British ancestry individuals from 6863 families.	NA	6q14.3	intergenic	rs566773279-G	5.0E-4	1E-8		0.10210232	[0.067-0.137] m increase	Illumina [24111857] (imputed)	N
1240	chr6	85920474	85920475	rs6934651	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6q14.3	NR	rs6934651-C	0.0775	6E-6	(EA)	0.0522	[0.029-0.075] unit increase	Illumina [~ 11800000] (imputed)	N
1240	chr6	85926385	85926386	rs2210478	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	6q14.3	NR	rs2210478-?	NR	8E-6				Affymetrix [NR]	N
1240	chr6	85943188	85943189	rs4053798	30116032	Erlangsen A	2018-08-16	Mol Psychiatry	Genetics of suicide attempts in individuals with and without mental disorders: a population-based genome-wide association study.	Suicide attempts	6,024 European ancestry cases, 44,240 European ancestry controls	NA	6q14.3	intergenic	rs4053798-A	0.0055	8E-7	(model 2)	1.8456994	[1.37-2.32]	Illumina [11601089] (imputed)	N
1240	chr6	85948870	85948871	rs7771273	31902109	Li D	2020-01-04	Genes Genomics	Progressive effects of single-nucleotide polymorphisms on 16 phenotypic traits based on longitudinal data.	Lung function	up to 4,291 Korean ancestry individuals	NA	6q14.3	TBX18, NT5E	rs7771273-A	0.06211	2E-6	(FVC)	0.5234	NR unit decrease	Affymetrix [305158]	N
1241	chr6	86004984	86004985	rs1358836	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	6q14.3	LOC101928820	rs1358836-A	0.803569	6E-11		0.0150649	[0.011-0.02] unit decrease	NR [13737936] (imputed)	N
1241	chr6	86018347	86018348	rs10455152	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Hippocampal volume in Alzheimer's disease dementia	190 European ancestry Alzheimer's disease dementia cases	NA	6q14.3	RPL31P32, KRT18P30, NT5E	rs10455152-C	0.23	8E-7		0.69	[0.44-0.94] unit increase	Illumina [8437147] (imputed)	N
1241	chr6	86077750	86077751	rs9344512	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6q14.3		rs9344512-?	NR	8E-12		0.0157182	[0.011-0.02] unit decrease	Affymetrix [20259828] (imputed)	N
1242	chr6	86117128	86117129	rs494562	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	6q14.3	NT5E	rs494562-A	0.9	1E-12	(inosine)	0.118	[0.085-0.151] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
1242	chr6	86117128	86117129	rs494562	21886157	Suhre K	2011-08-31	Nature	Human metabolic individuality in biomedical and pharmaceutical research.	Metabolic traits	2,820 European ancestry individuals	NA	6q14.3	NT5E	rs494562-G	0.106	7E-13	(inosine + 1 other trait)	0.302	[NR] unit increase	Affymetrix, Illumina [534665]	N
1242	chr6	86126144	86126145	rs9353309	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	6q14.3	AK024998, NT5E	rs9353309-C	0.874068	9E-14	(inosine)	0.252	[0.19-0.32] unit decrease	Illumina [13039987] (imputed)	N
1242	chr6	86132835	86132836	rs1000632	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	6q14.3	AK024998, NT5E	rs1000632-A	0.848901	5E-11	(adenosine)	0.171	[0.12-0.22] unit decrease	Illumina [13039987] (imputed)	N
1242	chr6	86185342	86185343	rs4707207	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	6q14.3	NT5E	rs4707207-C	0.164395	6E-13	(inosine)	0.217	[0.16-0.28] unit decrease	Illumina [13039987] (imputed)	N
1242	chr6	86221571	86221572	rs6910641	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6q14.3		rs6910641-?	NR	7E-8				NR [~ 8900000] (imputed)	N
1243	chr6	86312080	86312081	rs577343355	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6q14.3	RP11-321N4.5	rs577343355-A	0.008	9E-6		0.1805	[0.1-0.26] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1243	chr6	86362873	86362874	rs9353324	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interferon gamma-induced protein 10 levels	3,685 Finnish ancestry individuals	NA	6q14.3	NR	rs9353324-C		2E-7		0.2692	[0.17-0.37] SD units increase	NR [10700000] (imputed)	N
1244	chr6	86392101	86392102	rs2475792	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	6q14.3		rs2475792-T	NR	1E-8		0.0126	[0.0083-0.0169] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
1244	chr6	86415235	86415236	rs2475787	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q14.3	NR	rs2475787-C	0.549685	1E-11				Affymetrix, Illumina [23114412] (imputed)	N
1244	chr6	86434323	86434324	rs192425108	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	6q14.3		rs192425108-?	NR	4E-11				NR [~ 8900000] (imputed)	N
1244	chr6	86439328	86439329	rs10806334	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q14.3	NR	rs10806334-A	0.443108	4E-12				Affymetrix, Illumina [24649327] (imputed)	N
1244	chr6	86439328	86439329	rs10806334	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	6q14.3	NR	rs10806334-A	0.400918	3E-13		0.014054	[0.01-0.018] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
1244	chr6	86439328	86439329	rs10806334	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	6q14.3	NR	rs10806334-A	0.40098	9E-12		0.013747	[0.0098-0.0177] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
1244	chr6	86500955	86500956	rs12213431	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	6q14.3		rs12213431-?	NR	2E-13				NR [~ 8900000] (imputed)	N
1245	chr6	86624319	86624320	rs9450351	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interferon gamma-induced protein 10 levels	3,685 Finnish ancestry individuals	NA	6q14.3	NR	rs9450351-C		1E-8		0.2768	[0.18-0.37] SD units increase	NR [10700000] (imputed)	N
1246	chr6	86662266	86662267	rs12208493	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	6q14.3	intergenic	rs12208493-T	0.707	4E-9		0.0134	[0.0089-0.0179] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1246	chr6	86691939	86691940	rs1577917	20195266	Adkins DE	2010-03-02	Mol Psychiatry	Genomewide pharmacogenomic study of metabolic side effects to antipsychotic drugs.	Response to antipsychotic treatment	421 European ancestry, 214 African American, and 103 cases	NA	6q14.3	intergenic	rs1577917-?	0.21	3E-6	(clozapine-triglycerides)			Affymetrix [492900]	N
1246	chr6	86693955	86693956	rs140295727	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	6q14.3	SNHG5, HTR1E	rs140295727-C	0.01	2E-8	(EA)	0.4281	[0.28-0.58] unit decrease	Illumina [~ 9000000] (imputed)	N
1246	chr6	86693955	86693956	rs140295727	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	6q14.3	SNHG5, HTR1E	rs140295727-C	0.01	1E-8		0.4354	[0.29-0.58] unit decrease	Illumina [~ 9000000] (imputed)	N
1246	chr6	86756237	86756240	rs35337609	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	6q14.3		rs35337609-C	NR	2E-9		0.0129	[0.0088-0.017] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
1246	chr6	86763221	86763224	rs201806826	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interferon gamma-induced protein 10 levels	3,685 Finnish ancestry individuals	NA	6q14.3	NR	rs201806826-TTTG		6E-8		0.2611	[0.17-0.36] SD units increase	NR [10700000] (imputed)	N
1248	chr6	86905960	86905961	rs4053747	29187748	Morey RA	2017-11-30	Transl Psychiatry	Genome-wide association study of subcortical brain volume in PTSD cases and trauma-exposed controls.	Nucleus accumbens volume in trauma-exposed individuals	36 African American post-traumatic stress disorder cases, 38 African American trauma-exposed controls, 30 European ancestry post-traumatic stress disorder cases, 53 European ancestry trauma-exposed controls	NA	6q14.3	intergenic	rs4053747-?	NR	4E-7	(right hemisphere)			Illumina [2711511] (imputed)	N
1248	chr6	86918631	86918632	rs113032464	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interferon gamma-induced protein 10 levels	3,685 Finnish ancestry individuals	NA	6q14.3	NR	rs113032464-G		1E-7		0.2979	[0.19-0.41] SD units decrease	NR [10700000] (imputed)	N
1248	chr6	86977469	86977470	rs9342062	31194736	Tiensuu H	2019-06-13	PLoS Genet	Risk of spontaneous preterm birth and fetal growth associates with fetal SLIT2.	Spontaneous preterm birth without premature rupture of membranes	101 Finnish ancestry infant cases, 419 Finnish ancestry infant controls	NA	6q14.3	LOC101928842, HTR1E	rs9342062-?	NR	4E-6		2.85		Illumina [6778521] (imputed)	N
1248	chr6	86978138	86978139	rs56245736	34586716	Chen J	2021-09-29	Mol Genet Genomic Med	Heritability and genome-wide association study of blood pressure in Chinese adult twins.	Diastolic blood pressure	137 Chinese ancestry twins	NA	6q14.3		rs56245736-?	NR	6E-6				Illumina [7401356] (imputed)	N
1248	chr6	87012359	87012360	rs148501690	31455332	Zhang Y	2019-08-28	BMC Med	Dissecting genetic factors affecting phenylephrine infusion rates during anesthesia: a genome-wide association study employing EHR data.	Phenylephrine infusion rate during anesthesia	1,534 European ancestry individuals	NA	6q14.3	NDUFA5P9, LOC100652960	rs148501690-A	0.01437	2E-6		13.88	[19.61-8.15] unit decrease	Illumina [up to 4929806] (imputed)	N
1249	chr6	87116787	87116788	rs1508248	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	CAG-349 abundance in stool	5,959 Finnish ancestry individuals	NA	6q14.3		rs1508248-C	0.131778	8E-9		0.165252	[0.11-0.22] unit increase	Illumina [7980478] (imputed)	N
1249	chr6	87155253	87155254	rs13202860	22509378	Burri A	2012-04-11	PLoS One	A genome-wide association study of female sexual dysfunction.	Sexual dysfunction (female)	1,104 European ancestry twins	NA	6q14.3	intergenic	rs13202860-A	NR	1E-7	(Arousal)	0.421	[0.26-0.58] unit decrease	Illumina [2287762] (imputed)	N
1249	chr6	87159049	87159050	rs143359806	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GIP	5,352 Icelandic ancestry individuals	NA	6q14.3		rs143359806-C	0.01105	1E-11		0.152745	[0.11-0.2] unit increase	Illumina [7506463] (imputed)	N
1250	chr6	87200077	87200078	rs75484600	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6q14.3	NR	rs75484600-T	0.0122	3E-13	(AOC3)	0.03029	NR unit increase	Illumina [1671387] (imputed)	N
1250	chr6	87205570	87205571	rs139703972	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	6q14.3	NR	rs139703972-?	NR	3E-8				Illumina [7760689] (imputed)	N
1250	chr6	87225367	87225368	rs72907251	34062886	Nazarian A	2021-05-01	Genes (Basel)	Genome-Wide Analysis of Sex Disparities in the Genetic Architecture of Lung and Colorectal Cancers.	Colorectal cancer	211 European ancestry female cases, 186 European ancestry male cases, 8,382 European ancestry female controls, 6,312 European ancestry male controls	NA	6q14.3	HTR1E	rs72907251-C	0.937	1E-6	(Male)	0.446	[0.32-0.57]	NR [up to 1668415] (imputed)	N
1250	chr6	87236327	87236328	rs11751618	26528553	Davenport ER	2015-11-03	PLoS One	Genome-Wide Association Studies of the Human Gut Microbiota.	Gut microbiome composition (winter)	93 Hutterite individuals	NA	6q14.3	NR	rs11751618-?		3E-6	(family_Succinivibrionaceae)	0.7893122	[0.48-1.1] unit decrease	Affymetrix [211319]	N
1251	chr6	87312929	87312930	rs115395006	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque score in type 2 diabetes	691 African American individuals	205 African American individuals	6q14.3	intergenic	rs115395006-?	NR	4E-6		1.264	[0.6-1.93] unit decrease	Illumina [at least 13000000] (imputed)	N
1251	chr6	87320714	87320715	rs78206123	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Ischemic stroke (cardioembolic)	174 Indian ancestry cases, 2,154 Indian ancestry controls	NA	6q14.3		rs78206123-?	NR	9E-6		1.0961694	[1.05262681591909-1.14151315013688]	Illumina [up to 7827597] (imputed)	N
1251	chr6	87320714	87320715	rs78206123	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	6q14.3	RP1-253B10.1	rs78206123-T	0.0713	8E-6		0.0643	[0.036-0.093] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1251	chr6	87320714	87320715	rs78206123	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	6q14.3	RP1-253B10.1	rs78206123-T	0.0713	8E-6		0.0643	[0.036-0.093] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1251	chr6	87347804	87347805	rs9351104	24939585	Fransen E	2014-06-18	Eur J Hum Genet	Genome-wide association analysis demonstrates the highly polygenic character of age-related hearing impairment.	Age-related hearing impairment	1,489 European ancestry individuals	NA	6q14.3	intergenic	rs9351104-?		4E-6	(PC2)	0.0565	[NR] unit increase	Illumina [4167292] (imputed)	N
1252	chr6	87444569	87444570	rs138493184	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	6q14.3	NR	rs138493184-?	NR	5E-9				Illumina [7760689] (imputed)	N
1252	chr6	87466491	87466492	rs493187	20889312	Wang KS	2010-10-01	Schizophr Res	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	6q14.3	NR	rs493187-?	NR	3E-6		1.2298	[NR]	Affymetrix [722112]	N
1252	chr6	87504902	87504903	rs78358979	30514930	Mukherjee S	2018-12-04	Mol Psychiatry	Genetic data and cognitively defined late-onset Alzheimer's disease subgroups.	Alzheimer's disease with no specific cognitive domain impairment	Up to 1,584 European ancestry cases, 3,447 European ancestry controls	NA	6q14.3	NR	rs78358979-A	0.06	5E-7		1.76	[1.54-1.98]	NR [up to 6398204] (imputed)	N
1252	chr6	87510923	87510924	rs4291075	33693626	Jamieson SE	2021-03-09	Clin Infect Dis	Common and rare genetic variants that could contribute to severe otitis media in an Australian Aboriginal population.	Otitis media	21 Martu ancestry cases, 370 Martu ancestry controls	NA	6q14.3		rs4291075-T	0.38	8E-6				Illumina [6724284] (imputed)	N
1252	chr6	87531745	87531746	rs16879870	32266149	He Y	2020-03-20	Front Oncol	Genetic Variants Were Associated With the Prognosis of Head and Neck Squamous Carcinoma.	Head and neck squamous cell carcinoma	261 Chinese ancestry cases	525 Chinese ancestry cases	6q14.3	intergenic	rs16879870-?		4E-6		2.02	[1.50-2.73]	Illumina [247870]	N
1253	chr6	87559470	87559471	rs10806385	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	6q14.3	NR	rs10806385-A	0.381309	5E-9		0.012557	[0.0084-0.0168] unit increase	NR [NR]	N
1253	chr6	87571305	87571306	rs71572731	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6q14.3	NR	rs71572731-T	0.01742	6E-12	(AOC3)	0.02286	NR unit increase	Illumina [1671387] (imputed)	N
1253	chr6	87606841	87606842	rs1853639	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6q14.3	NR	rs1853639-G	0.359453092898615	8E-6	(IGP21)	0.1761	[0.099-0.254] unit decrease	Illumina [~ 2500000] (imputed)	N
1253	chr6	87673391	87673392	rs117389875	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Stem cell factor levels	8,290 Finnish ancestry individuals	NA	6q14.3	NR	rs117389875-C		9E-6		0.1576	[0.088-0.227] SD units decrease	NR [10700000] (imputed)	N
1253	chr6	87682166	87682167	rs146855431	28644415	Guenard F	2017-06-23	Nutrients	Genome-Wide Association Study of Dietary Pattern Scores.	Prudent dietary pattern	141 individuals	NA	6q14.3	HTR1E	rs146855431-?		9E-6				Illumina [2668805]	N
1254	chr6	87721556	87721557	rs113270593	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6q14.3	NR	rs113270593-T	0.01045	2E-8	(CKB)	0.03228	NR unit increase	Illumina [1671387] (imputed)	N
1254	chr6	87737840	87737841	rs7744971	31339356	Hobbs BD	2019-07-24	Am J Respir Crit Care Med	Overlap of Genetic Risk Between Interstitial Lung Abnormalities and Idiopathic Pulmonary Fibrosis.	Subpleural-predominant interstitial lung abnormalities	965 European ancestry cases, 154 African American cases, 168 cases, 7,255 European ancestry controls, 1,717 African American controls, 450 controls	NA	6q14.3	HTR1E	rs7744971-G	0.28	4E-8		1.32	[1.19-1.45]	Affymetrix, Illumina [at least 412049] (imputed)	N
1254	chr6	87737840	87737841	rs7744971	31339356	Hobbs BD	2019-07-24	Am J Respir Crit Care Med	Overlap of Genetic Risk Between Interstitial Lung Abnormalities and Idiopathic Pulmonary Fibrosis.	Interstitial lung abnormalities	1,181 European ancestry cases, 280 African American cases, 54 Hispanic cases, 184 cases, 7,255 European ancestry controls, 2,184 African American controls, 385 Hispanic controls, 450 controls	NA	6q14.3	HTR1E	rs7744971-G	0.28	1E-7		1.26	[1.16-1.37]	Affymetrix, Illumina [at least 412049] (imputed)	N
1254	chr6	87749814	87749815	rs7739124	31339356	Hobbs BD	2019-07-24	Am J Respir Crit Care Med	Overlap of Genetic Risk Between Interstitial Lung Abnormalities and Idiopathic Pulmonary Fibrosis.	Interstitial lung abnormalities	1,181 European ancestry cases, 280 African American cases, 54 Hispanic cases, 184 cases, 7,255 European ancestry controls, 2,184 African American controls, 385 Hispanic controls, 450 controls	NA	6q14.3	HTR1E	rs7739124-C	0.33	3E-9	(EA)	1.31	[1.19-1.44]	Affymetrix, Illumina [at least 412049] (imputed)	N
1254	chr6	87752320	87752321	rs912535	31339356	Hobbs BD	2019-07-24	Am J Respir Crit Care Med	Overlap of Genetic Risk Between Interstitial Lung Abnormalities and Idiopathic Pulmonary Fibrosis.	Subpleural-predominant interstitial lung abnormalities	965 European ancestry cases, 154 African American cases, 168 cases, 7,255 European ancestry controls, 1,717 African American controls, 450 controls	NA	6q14.3	HTRE1	rs912535-G	0.324	4E-9	(EA)	1.37	[1.23-1.52]	Affymetrix, Illumina [at least 412049] (imputed)	N
1254	chr6	87780723	87780724	rs9353446	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	6q14.3		rs9353446-?	NR	2E-12				NR [~ 8900000] (imputed)	N
1254	chr6	87805209	87805210	rs2242602	32769997	Zhou W	2020-08-07	Nat Commun	GWAS of thyroid stimulating hormone highlights pleiotropic effects and inverse association with thyroid cancer.	Thyroid stimulating hormone levels	119,715 European ancestry individuals	NA	6q14.3	CGA	rs2242602-T	0.286042144233829	2E-17		0.0428	[0.033-0.053] SD increase	Illumina [22400000] (imputed)	N
1254	chr6	87805591	87805592	rs2031365	26584805	Dorajoo R	2015-11-19	Genes Nutr	A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.	Plasma omega-6 polyunsaturated fatty acid levels (gamma-linolenic acid)	717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls	NA	6q14.3	NR	rs2031365-T	0.2591	1E-6		0.1216	[0.073-0.171] unit increase	Illumina [up to 1980188] (imputed)	N
1254	chr6	87816904	87816905	rs4574603	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q14.3	NR	rs4574603-T	0.503268	2E-20				Affymetrix, Illumina [24649327] (imputed)	N
1254	chr6	87816904	87816905	rs4574603	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	6q14.3		rs4574603-?	NR	4E-20				NR [~ 8900000] (imputed)	N
1255	chr6	87821500	87821501	rs2031522	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	6q14.3	CGA	rs2031522-A	0.624	1E-10		1.04	[1.03-1.06]	Illumina [34740186] (imputed)	N
1255	chr6	87821827	87821828	rs67614146	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	6q14.3	intergenic	rs67614146-A	0.4868	6E-18		0.0316822	[0.024-0.039] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1255	chr6	87821827	87821828	rs67614146	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	6q14.3	intergenic	rs67614146-A	0.487	6E-12		0.02515214	[0.018-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
1255	chr6	87821827	87821828	rs67614146	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	6q14.3	intergenic	rs67614146-A	0.4869	5E-15		0.02877099	[0.022-0.036] unit increase	Affymetrix [~ 2500000] (imputed)	N
1255	chr6	87837958	87837961	rs200638392	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	6q14.3	intergenic	rs200638392-T	0.4161	6E-11		0.02495372	[0.017-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1255	chr6	87837958	87837961	rs200638392	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	6q14.3	intergenic	rs200638392-T	0.4161	7E-16		0.03081319	[0.023-0.038] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1255	chr6	87837958	87837961	rs200638392	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	6q14.3	intergenic	rs200638392-T	0.4161	9E-17		0.0317732	[0.024-0.039] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1255	chr6	87837958	87837961	rs200638392	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	6q14.3	intergenic	rs200638392-T	0.4161	2E-17		0.03227661	[0.025-0.04] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1255	chr6	87837958	87837961	rs200638392	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	6q14.3	intergenic	rs200638392-T	0.4161	2E-14		0.02933678	[0.022-0.037] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1255	chr6	87837958	87837961	rs200638392	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	6q14.3	intergenic	rs200638392-T	0.4163	1E-13		0.02827336	[0.021-0.036] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1255	chr6	87837958	87837961	rs200638392	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	6q14.3	intergenic	rs200638392-T	0.4161	2E-15		0.03037785	[0.023-0.038] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1255	chr6	87838861	87838862	rs34354898	30796134	Soderholm M	2019-02-22	Neurology	Genome-wide association meta-analysis of functional outcome after ischemic stroke.	3-month functional outcome in ischaemic stroke (modified Rankin score)	6,165 European and unknown ancestry individuals	NA	6q14.3	CGA, ZNF292	rs34354898-G	0.54	8E-7		1.1904762	[1.12-1.26]	Affymetrix, Illumina [~ 8500000] (imputed)	N
1255	chr6	87839740	87839741	rs9344678	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	6q14.3		rs9344678-T	NR	8E-17		0.0164	[0.012-0.02] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1255	chr6	87840706	87840707	rs9351114	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	6q14.3		rs9351114-T	NR	3E-29		0.0239	[0.02-0.028] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
1255	chr6	87848301	87848302	rs6454582	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	6q14.3		rs6454582-T	NR	3E-9		0.0118	[0.0079-0.0157] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
1255	chr6	87848301	87848302	rs6454582	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	6q14.3		rs6454582-T	0.487472	2E-14		0.0147668	[0.011-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
1255	chr6	87848301	87848302	rs6454582	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	6q14.3		rs6454582-?	NR	5E-11				NR [~ 8900000] (imputed)	N
1255	chr6	87852255	87852256	rs6926838	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q14.3	NR	rs6926838-A	0.502492	1E-14				Affymetrix, Illumina [24246363] (imputed)	N
1255	chr6	87854340	87854341	rs9362395	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	6q14.3	NR	rs9362395-T	NR	7E-7		1.12	[NR]	Illumina [7158791] (imputed)	N
1255	chr6	87856002	87856003	rs6907805	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	6q14.3	CGA, ZNF292	rs6907805-G	0.51	1E-8		1.04	[1.03-1.06]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1255	chr6	87858690	87858691	rs1925686	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	6q14.3	ZNF292	rs1925686-G	0.610709	7E-9		0.0122683	[0.0081-0.0164] unit decrease	NR [16516521] (imputed)	N
1255	chr6	87861784	87861785	rs6454589	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	6q14.3	NR	rs6454589-T	0.485992	1E-14		0.014384	[0.011-0.018] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1255	chr6	87867062	87867063	rs1925690	21116278	Furney SJ	2010-11-30	Mol Psychiatry	Genome-wide association with MRI atrophy measures as a quantitative trait locus for Alzheimer's disease.	Entorhinal cortical volume (Alzheimer's disease interaction)	424 European ancestry mild cognitive impairment cases, 236 European ancestry Alzheimer's disease cases, 279 European ancestry controls	NA	6q14.3	ZNF292	rs1925690-?	NR	3E-8		3.0E-4	[NR] unit increase	Illumina [478011]	N
1255	chr6	87897364	87897365	rs9450629	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Cerebellum white matter volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	6q14.3	ZNF292	rs9450629-?		7E-6				Illumina [4322238] (imputed)	N
1255	chr6	87909327	87909328	rs9351120	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6q14.3		rs9351120-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1255	chr6	87925825	87925826	rs2108268	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6q14.3	ZNF292	rs2108268-C	0.486611	7E-17		0.01835666	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1256	chr6	87949399	87949402	rs372518971	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	6q14.3	ZNF292	rs372518971-T	0.462502	3E-24		0.02322511	[0.019-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1256	chr6	87949399	87949402	rs372518971	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6q14.3	ZNF292	rs372518971-T	0.46249	7E-14		0.01708237	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1256	chr6	87956243	87956244	rs9344695	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	6q14.3	NR	rs9344695-C	0.486945	1E-19		0.016696	[0.013-0.02] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1256	chr6	87962909	87962910	rs149527135	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Gamma glutamyl transferase levels in low alcohol consumption	8,716 individuals	NA	6q14.3	NR	rs149527135-?	NR	2E-6		0.0903	[0.053-0.127] unit increase	Illumina [~ 7800000] (imputed)	N
1256	chr6	87968564	87968565	rs9362415	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atrial fibrillation/atrial flutter	29,212 European ancestry cases, 400,539 European ancestry controls, 4,150 East Asian ancestry cases, 155,540 East Asian ancestry controls	NA	6q14.3		rs9362415-G	NR	4E-8		0.0509	[0.033-0.069] unit decrease	Affymetrix, Illumina [25830072] (imputed)	N
1256	chr6	87969736	87969737	rs3734187	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	6q14.3		rs3734187-C	0.51	6E-11				Affymetrix [10369434] (imputed)	N
1256	chr6	87980018	87980018	rs34717228	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	6q14.3		rs34717228-GT	0.481044	3E-25		0.023174586	[0.019-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1256	chr6	87980734	87980735	rs6454596	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q14.3	NR	rs6454596-C	0.501503	2E-38				Affymetrix, Illumina [23114412] (imputed)	N
1256	chr6	87980734	87980735	rs6454596	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	6q14.3	NR	rs6454596-C	0.489705	1E-39		0.025302	[0.022-0.029] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
1256	chr6	87983689	87983690	rs9362417	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	6q14.3		rs9362417-G	0.490058	5E-40		0.029224493	[0.025-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
1256	chr6	87983689	87983690	rs9362417	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	6q14.3		rs9362417-G	0.490076	9E-35		0.027110728	[0.023-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
1256	chr6	87990625	87990627	rs545836323	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	6q14.3	GJB7	rs545836323-G	0.4904	2E-18		0.03127891	[0.024-0.038] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1256	chr6	87990625	87990627	rs545836323	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	6q14.3	GJB7	rs545836323-G	0.4904	6E-12		0.02448852	[0.018-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
1256	chr6	88000580	88000581	rs6940544	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	6q14.3		rs6940544-A	NR	7E-14		0.0149	[0.011-0.019] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
1256	chr6	88020520	88020521	rs59322	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	6q15		rs59322-A	NR	2E-8		0.0093	[0.0062-0.0124] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
1256	chr6	88020520	88020521	rs59322	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	6q15	NR	rs59322-A	0.466075	1E-15		0.015896	[0.012-0.02] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
1256	chr6	88032389	88032390	rs7341237	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	6q15	NR	rs7341237-?	NR	2E-6				Affymetrix [5486770] (imputed)	N
1256	chr6	88038197	88038198	rs12190506	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	6q15	GJB7	rs12190506-C	0.4645	9E-13		0.0138	[0.01-0.018] unit increase	Affymetrix [18391927] (imputed)	N
1256	chr6	88061988	88061989	rs242269	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q15	NR	rs242269-T	0.582053	1E-15				Affymetrix, Illumina [19872809] (imputed)	N
1256	chr6	88064102	88064103	rs1753159	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	6q15	NR	rs1753159-T	NR	2E-14		0.0185	[0.014-0.023] unit increase	Affymetrix [9000000] (imputed)	N
1257	chr6	88089873	88089874	rs9362426	26297903	Fabbri C	2015-08-20	Prog Neuropsychopharmacol Biol Psychiatry	Genetics of long-term treatment outcome in bipolar disorder.	Depressive episodes in bipolar disorder	723 European ancestry cases	NA	6q15	C6orf163	rs9362426-?	NR	1E-6		0.08	[NR] unit increase	Affymetrix [329806] (imputed)	N
1257	chr6	88100418	88100419	rs2092850	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	6q15	Intergenic	rs2092850-G	NR	2E-6		0.0198109	[0.012-0.028] unit increase	Illumina [13520550] (imputed)	N
1257	chr6	88133314	88133315	rs6912958	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	6q15	C6orf165, C6ORF165	rs6912958-A	0.574008	2E-23		0.022386763	[0.018-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1257	chr6	88133314	88133315	rs6912958	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	6q15	C6ORF165, C6orf165	rs6912958-A	0.5731	1E-9		0.02185332	[0.015-0.029] unit increase	Affymetrix [~ 2500000] (imputed)	N
1257	chr6	88171407	88171408	rs66679842	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	6q15	C6orf165	rs66679842-?	NR	9E-6		0.0169797	[0.0095-0.0245] unit increase	Illumina [13519193] (imputed)	N
1257	chr6	88183646	88183647	rs2268992	29234017	Carayol J	2017-12-12	Nat Commun	Protein quantitative trait locus study in obesity during weight-loss identifies a leptin regulator.	Protein levels in obesity	494 European ancestry individuals	NA	6q15	NR	rs2268992-?	NR	9E-8	(ACTH)	0.35	[0.21-0.49] unit increase	Illumina [4020654] (imputed)	N
1257	chr6	88198354	88198355	rs6911364	30172743	Liang X	2018-08-30	Bone	Assessing the genetic correlations between early growth parameters and bone mineral density: A polygenic risk score analysis.	Bone mineral density (hip)	2,286 European ancestry individuals	NA	6q15	SLC35A1	rs6911364-?	NR	9E-6				Affymetrix [753382]	N
1258	chr6	88265818	88265819	rs9342115	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	6q15	RARS2	rs9342115-C	0.08405	5E-9		0.021714892	[0.014-0.029] unit decrease	Affymetrix [up to 18485882] (imputed)	N
1258	chr6	88265818	88265819	rs9342115	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	6q15	Intergenic	rs9342115-T	0.9217	3E-8	(MTAG)	0.0185	[0.012-0.025] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1258	chr6	88273968	88273969	rs6900057	28355232	Ward-Caviness CK	2017-03-29	PLoS One	A genome-wide trans-ethnic interaction study links the PIGR-FCAMR locus to coronary atherosclerosis via interactions between genetic variants and residential exposure to traffic.	Coronary atherosclerosis (increased number of diseased vessels) (traffic exposure interaction)	1,562 European ancestry individuals, 538 African American individuals	NA	6q15	NR	rs6900057-?	NR	7E-6				Illumina [at least 756588]	N
1258	chr6	88277131	88277132	rs76563242	30276832	Edwards AC	2018-10-01	Alcohol Clin Exp Res	Meta-Analysis of Genetic Influences on Initial Alcohol Sensitivity.	Initial alcohol sensitivity	6,039 European ancestry individuals, 892 African ancestry individuals, 408 American ancestry individuals	NA	6q15	RARS2	rs76563242-?	NR	3E-6				Affymetrix, Illumina [15642250] (imputed)	N
1258	chr6	88278054	88278055	rs78900282	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	6q15	Intergenic	rs78900282-T	0.0785	3E-13	(MTAG)	0.0223	[0.016-0.028] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1258	chr6	88278143	88278144	rs78452560	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	6q15		rs78452560-?	NR	4E-11				NR [~ 8900000] (imputed)	N
1258	chr6	88279871	88279872	rs4352658	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6q15		rs4352658-T	0.081	2E-13		0.019	[0.014-0.024] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1258	chr6	88279871	88279872	rs4352658	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6q15	Intergenic	rs4352658-T	0.081	5E-15	(MTAG)	0.0188	[0.014-0.024] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1258	chr6	88329941	88329942	rs13213285	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6q15	ORC3, SLC35A1, RARS2	rs13213285-A	0.034	4E-6	(Fat mass deposition )	0.04	[NR] kcal/d increase	Illumina [899892]	N
1259	chr6	88377048	88377049	rs28381552	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6q15	ORC3, SLC35A1, RARS2	rs28381552-G	0.025	4E-6	(Fat mass change )	0.04	[NR] kg/y increase	Illumina [899892]	N
1261	chr6	88649445	88649446	rs9359762	26249676	Wolthusen RP	2015-08-07	World J Biol Psychiatry	Genetic underpinnings of left superior temporal gyrus thickness in patients with schizophrenia.	Left superior temporal gyrus thickness (schizophrenia interaction)	113 schizophrenia cases, 126 controls	NA	6q15	SPACA1	rs9359762-T		9E-6		0.265	[NR] unit decrease	Illumina [1067955] (imputed)	N
1261	chr6	88652579	88652580	rs2509458	17903302	Levy D	2007-09-19	BMC Med Genet	Framingham Heart Study 100K Project: genome-wide associations for blood pressure and arterial stiffness.	Blood pressure	Up to 1,327 individuals	NA	6q15	intergenic	rs2509458-?	NR	7E-6	(DBP)			Affymetrix [70897]	N
1261	chr6	88717765	88717766	rs366676	17903301	Vasan RS	2007-09-19	BMC Med Genet	Genome-wide association of echocardiographic dimensions, brachial artery endothelial function and treadmill exercise responses in the Framingham Heart Study.	Echocardiographic traits	Up to 1,238 European ancestry individuals	NA	6q15	SPACA1	rs366676-?	NR	2E-6	(LVFS)			Affymetrix [70897]	N
1262	chr6	88800789	88800790	rs806447	33824429	Fjukstad KK	2021-04-06	Pharmacogenomics J	Genetic variants associated with cardiometabolic abnormalities during treatment with selective serotonin reuptake inhibitors: a genome-wide association study.	Triglyceride levels x SSRI levels (escitalopram or citalopram) interaction in schizophrenia or bipolar disorder	181 European ancestry individuals	NA	6q15	SPACA1	rs806447-G	NR	3E-6		2.11371	[1.27-2.95] unit increase	Illumina [NR] (imputed)	N
1263	chr6	88883323	88883324	rs9450906	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	6q15	NR	rs9450906-?	NR	6E-6				Affymetrix [5486770] (imputed)	N
1263	chr6	88888403	88888404	rs75205693	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	6q15	NR	rs75205693-?	NR	2E-8				Illumina [7760689] (imputed)	N
1263	chr6	88902489	88902490	rs6933130	27694959	Bonder MJ	2016-10-03	Nat Genet	The effect of host genetics on the gut microbiome.	Gut microbiota (functional units)	984 European ancestry individuals	530 European ancestry individuals	6q15	CNR1	rs6933130-T	NR	4E-8	(PWY-5345_superpathway_of_L-methionine_biosynthesis_(by_sulfhydrylation))	5.4949656	NR Z-score decrease	Illumina [8100000] (imputed)	N
1263	chr6	88920348	88920349	rs116915066	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	6q15	NR	rs116915066-T	0.01	4E-6		1.0309278	[-1.04667-3.10853]	Affymetrix [at least 143006] (imputed)	N
1263	chr6	88975976	88975977	rs16880441	18846501	Sonuga-Barke EJ	2008-10-07	Am J Med Genet B Neuropsychiatr Genet	Does parental expressed emotion moderate genetic effects in ADHD? An exploration using a genome wide association scan.	Conduct disorder (maternal expressed emotions interaction)	909 European ancestry trios	NA	6q15	intergenic	rs16880441-G	0.08	9E-6	(maternal criticism)	1.63	[NR] unit increase	Perlegen [429901]	N
1263	chr6	88991885	88991886	rs117955096	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	6q15	NR	rs117955096-?	NR	2E-8				Illumina [7760689] (imputed)	N
1264	chr6	89061274	89061275	rs185973901	30219690	Heinzman JT	2018-09-07	J Affect Disord	GWAS and systems biology analysis of depressive symptoms among smokers from the COPDGene cohort.	Depression in smokers	1,622 European ancestry cases, 391 African American cases, 4,954 European ancestry controls, 2,749 African American controls	NA	6q15	CNR1	rs185973901-C	0.9707	2E-6	(AA)			Illumina [NR] (imputed)	N
1264	chr6	89112816	89112817	rs10485165	17903293	Benjamin EJ	2007-09-19	BMC Med Genet	Genome-wide association with select biomarker traits in the Framingham Heart Study.	Select biomarker traits	1,012 European ancestry individuals	NA	6q15	intergenic	rs10485165-?	NR	1E-6	(VitD25OH)			Affymetrix [70897]	N
1265	chr6	89170361	89170362	rs114969316	30219690	Heinzman JT	2018-09-07	J Affect Disord	GWAS and systems biology analysis of depressive symptoms among smokers from the COPDGene cohort.	Depression in smokers	1,622 European ancestry cases, 391 African American cases, 4,954 European ancestry controls, 2,749 African American controls	NA	6q15	RNGTT	rs114969316-A	0.952	2E-7	(AA)			Illumina [NR] (imputed)	N
1265	chr6	89183579	89183580	rs11757661	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Subcutaneous adipose tissue	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	6q15	RNGTT	rs11757661-A	0.04	8E-6	(overall)			Affymetrix, Illumina [2500000] (imputed)	N
1265	chr6	89253648	89253649	rs2610739	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6q15	NR	rs2610739-G	0.187486864203028	4E-6	(IGP65)	0.1852	[0.11-0.26] unit decrease	Illumina [~ 2500000] (imputed)	N
1266	chr6	89267043	89267044	rs1923418	32080893	Divers J	2020-02-20	Clin Transplant	GWAS for time to failure of kidney transplants from African American deceased donors.	Graft survival time in renal transplantation (donor effect)	532 African American donors	250 African American donors	6q15	RNGTT	rs1923418-?	NR	6E-7		0.49	NR unit increase	Illumina [> 13000000] (imputed)	N
1266	chr6	89293744	89293745	rs12527253	20339536	Barber MJ	2010-03-22	PLoS One	Genome-wide association of lipid-lowering response to statins in combined study populations.	Response to statin therapy	3,928 European ancestry individuals	NA	6q15	RNGTT, ACTBP8, LOC644119	rs12527253-G	0.34	1E-6	(LDL, sum)			Illumina [~ 2500000] (imputed)	N
1267	chr6	89479012	89479013	rs6454721	31220337	Carr DF	2019-06-20	Clin Pharmacol Ther	Genome-wide association study of statin-induced myopathy in patients recruited using the UK clinical practice research datalink.	Simvastatin-induced myopathy	85 European ancestry cases, 2,501 controls	NA	6q15	RNGTT	rs6454721-?	NR	9E-6		4.0	[1.85-8.33]	Illumina [654642] (imputed)	N
1268	chr6	89565736	89565737	rs17503919	26621817	Cheng TH	2015-12-01	Sci Rep	Meta-analysis of genome-wide association studies identifies common susceptibility polymorphisms for colorectal and endometrial cancer near SH2B3 and TSHZ1.	Colorectal or endometrial cancer	5,725 European ancestry colorectal carcinoma cases, 2,212 European ancestry endometrial carcinoma cases, 13,396 European ancestry controls	NA	6q15	RNGTT	rs17503919-A	0.862	2E-7	(same direction)	1.17	[1.11-1.25]	Illumina [up to 6000000] (imputed)	N
1269	chr6	89725718	89725719	rs4707514	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6q15	RP1-72A23.3	rs4707514-A	0.996	5E-6		0.2924	[0.17-0.42] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1269	chr6	89732100	89732101	rs12201676	20889312	Wang KS	2010-10-01	Schizophr Res	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	6q15	GABRR1	rs12201676-?	NR	4E-8		1.3139	[NR]	Affymetrix [722112]	N
1269	chr6	89756994	89756995	rs855569	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	6q15	RNGTT, PNRC1	rs855569-?	NR	3E-9		0.018268434	[0.012-0.024] unit decrease	Illumina [27896057] (imputed)	N
1269	chr6	89772706	89772707	rs10447338	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q15	NR	rs10447338-G	0.288482	1E-10				Affymetrix, Illumina [23467995] (imputed)	N
1269	chr6	89773182	89773183	rs10447339	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	6q15	RP1-72A23.1, RNU2-61P	rs10447339-A	0.318853	6E-11		0.015555969	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1269	chr6	89777630	89777631	rs9451139	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	6q15	NR	rs9451139-T	0.319682	5E-12		0.013872	[0.0099-0.0178] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1269	chr6	89778439	89778440	rs9451140	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	6q15		rs9451140-A	0.319313	4E-13		0.017308852	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1270	chr6	89790200	89790201	rs2231265	30846698	Dashti HS	2019-03-07	Nat Commun	Genome-wide association study identifies genetic loci for self-reported habitual sleep duration supported by accelerometer-derived estimates.	Sleep duration	446,118 European ancestry individuals	47,180  adults, 10,554 children or adolescents	6q15	NR	rs2231265-G	NR	4E-10		0.93	unit increase	Affymetrix [14661600] (imputed)	N
1270	chr6	89793893	89793894	rs1130809	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	6q15		rs1130809-C	NR	3E-15		0.0121	[0.0092-0.015] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1270	chr6	89798678	89798679	rs9451146	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Sleep duration	384,317 European ancestry individuals	NA	6q15		rs9451146-T	0.228	9E-9		0.01678	[0.011-0.022] unit decrease	Affymetrix, Illumina [10862567] (imputed)	N
1270	chr6	89826245	89826246	rs7747136	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6q15		rs7747136-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1270	chr6	89827715	89827716	rs77589760	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	6q15	NR	rs77589760-?		4E-10		0.0371731	[0.026-0.049] unit increase	Affymetrix [19400418] (imputed)	N
1270	chr6	89837050	89837051	rs35693340	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	6q15	SRSF12, PM20D2	rs35693340-CT	0.466519	7E-23	(N-acetylcarnosine)	0.226	[0.18-0.27] unit increase	Illumina [13039987] (imputed)	N
1270	chr6	89843702	89843703	rs117313366	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial lung cancer	1,993 European ancestry cases, 33,960 European ancestry controls	NA	6q15	NR	rs117313366-A	0.082	6E-6		1.37	[1.19-1.57]	Illumina [9327222] (imputed)	N
1270	chr6	89873283	89873284	rs114042185	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	6q15	PM20D2	rs114042185-G	0.94857	3E-16	(N-acetylcarnosine)	0.415	[0.32-0.51] unit increase	Illumina [13039987] (imputed)	N
1270	chr6	89879167	89879168	rs7775554	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	6q15	PM20D2	rs7775554-A	0.53	1E-15	(X-12244--N-acetylcarnosine)	0.019	[0.015-0.023] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
1271	chr6	89915683	89915684	rs3818682	30954325	Kamboh MI	2019-03-11	Neurobiol Aging	Population-based genome-wide association study of cognitive decline in older adults free of dementia: identification of a novel locus for the attention domain.	Age-related cognitive decline (memory) (slope of z-scores)	1,145 European ancestry individuals	NA	6q15	GABRR1	rs3818682-T	0.38	7E-6		0.18	unit decrease	Illumina [5600000] (imputed)	N
1271	chr6	89918637	89918638	rs13215566	27020472	Fan Q	2016-03-29	Nat Commun	Meta-analysis of gene-environment-wide association scans accounting for education level identifies additional loci for refractive error.	Spherical equivalent (joint analysis main effects and education interaction)	2,604 Erasmus Rucphen population isolate individuals, 456 Sardinian population isolate individuals, 36,976 European ancestry individuals, 5,971 East Asian ancestry individuals, 2,256 Malay ancestry individuals, 2,088 Indian ancestry individuals	NA	6q15	GABRR1	rs13215566-C	0.94	4E-8	(Asian ancestry)			Affymetrix, Illumina [up to 7331415] (imputed)	N
1271	chr6	89942933	89942934	rs2150814	29703844	van Zuydam NR	2018-04-27	Diabetes	A Genome-Wide Association Study of Diabetic Kidney Disease in Subjects With Type 2 Diabetes.	Diabetic kidney disease in type 2 diabetes	3,345 European ancestry cases, 2,372 European ancestry controls	4,579 European ancestry cases, 7,777 European ancestry controls, 7,272 Asian cases, 8,775 Asian controls, 465 Chinese ancestry cases, 154 Chinese ancestry controls, 156 Indian ancestry cases, 66 Indian ancestry controls, 202 Malay ancestry cases, 21 Malay ancestry controls	6q15	NR	rs2150814-?		2E-6	(EA)	1.18	[1.11-1.26]	Affymetrix, Illumina [up to 9343778] (imputed)	N
1271	chr6	89948231	89948232	rs9942471	29703844	van Zuydam NR	2018-04-27	Diabetes	A Genome-Wide Association Study of Diabetic Kidney Disease in Subjects With Type 2 Diabetes.	Early diabetic kidney disease in type 2 diabetes	1,989 European ancestry cases, 2,238 European ancestry controls	832 European ancestry cases, 2,653 European ancestry controls, 1,518 Asian cases, 3,990 Asian controls, 286 Chinese ancestry cases, 154 Chinese ancestry controls, 114 Indian ancestry cases, 66 Indian ancestry controls, 116 Malay ancestry cases, 21 Malay ancestry controls	6q15	GABRR1	rs9942471-A	0.64	5E-8	(EA)	1.25	[1.16-1.34]	Affymetrix, Illumina [up to 9343778] (imputed)	N
1271	chr6	89948231	89948232	rs9942471	29703844	van Zuydam NR	2018-04-27	Diabetes	A Genome-Wide Association Study of Diabetic Kidney Disease in Subjects With Type 2 Diabetes.	Diabetic kidney disease in type 2 diabetes	3,345 European ancestry cases, 2,372 European ancestry controls	4,579 European ancestry cases, 7,777 European ancestry controls, 7,272 Asian cases, 8,775 Asian controls, 465 Chinese ancestry cases, 154 Chinese ancestry controls, 156 Indian ancestry cases, 66 Indian ancestry controls, 202 Malay ancestry cases, 21 Malay ancestry controls	6q15	GABRR1	rs9942471-A	0.64	4E-7	(EA)	1.18	[1.11-1.25]	Affymetrix, Illumina [up to 9343778] (imputed)	N
1271	chr6	89979704	89979705	rs78598955	32771030	Tangtanatakul P	2020-08-08	Arthritis Res Ther	Meta-analysis of genome-wide association study identifies FBN2 as a novel locus associated with systemic lupus erythematosus in Thai population.	Systemic lupus erythematosus	487 Thai cases, 1,606 Thai controls	405 Thai cases, 1,590 Thai controls	6q15	GABRR2	rs78598955-C	0.03	2E-6		2.3272	[NR]	Illumina [421909] (imputed)	N
1271	chr6	89983195	89983196	rs62416351	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Third ventricle volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	6q15	GABRR2	rs62416351-?		4E-7				Illumina [4322238] (imputed)	N
1271	chr6	90007856	90007857	rs77482521	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6q15	NR	rs77482521-A	0.01045	2E-8	(MPC1)	0.01292	NR unit increase	Illumina [1671387] (imputed)	N
1272	chr6	90070054	90070055	rs1145719	33407418	Jonsson A	2021-01-06	BMC Med Genomics	Genome-wide association study of circulating levels of glucagon during an oral glucose tolerance test.	Glucagon levels in response to oral glucose tolerance test (fasting)	553 European ancestry individuals, 1,346 individuals	NA	6q15	NR	rs1145719-A	0.3681	5E-6		0.1527	[0.087-0.218] unit increase	Illumina [NR] (imputed)	N
1272	chr6	90092831	90092832	rs78937420	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid vs negative)	9,913 European ancestry cases, 85,072 European ancestry controls, 2,553 Hispanic or Latin American cases, 13,086 Hispanic or Latin American controls, 506 Black or African American cases, 3,110 Black or African American controls	NA	6q15		rs78937420-?	NR	4E-6		0.275741	[0.16-0.39] unit increase	Illumina [9939936] (imputed)	N
1272	chr6	90109373	90109374	rs6907843	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	6q15		rs6907843-T	NR	2E-16		0.0175	[0.013-0.022] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
1272	chr6	90109373	90109374	rs6907843	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Glomerular filtration rate	143,658 Japanese ancestry individuals	NA	6q15	RRAGD	rs6907843-?	NR	3E-9		0.04143	[0.028-0.055] unit decrease novel	Illumina [6108953] (imputed)	N
1272	chr6	90109373	90109374	rs6907843	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Creatinine levels	142,097 Japanese ancestry individuals	NA	6q15	RRAGD	rs6907843-?	NR	4E-9		0.04016	[0.027-0.054] unit increase novel	Illumina [6108953] (imputed)	N
1272	chr6	90113026	90113027	rs9294435	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	150,266 East Asian ancestry individuals	NA	6q15		rs9294435-A	0.087115	3E-8		0.0286924	[0.019-0.039] unit increase	Illumina [13478778] (imputed)	N
1272	chr6	90118763	90118764	rs72912510	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	6q15	RRAGD	rs72912510-A	0.1958	7E-13		0.0024	[0.0016-0.0032] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
1272	chr6	90121976	90121976	rs148684631	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	6q15	NR	rs148684631-GGAGA	NR	7E-11		0.0177	[0.012-0.023] unit increase	Affymetrix [9000000] (imputed)	N
1272	chr6	90121990	90121990	rs56142449	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	6q15		rs56142449-AGAGG	NR	2E-12		0.0169	[0.012-0.022] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
1272	chr6	90127098	90127099	rs1209058	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	6q15		rs1209058-T	NR	1E-11		0.0145	[0.01-0.019] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1272	chr6	90127098	90127099	rs1209058	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	6q15		rs1209058-T	NR	3E-9		0.0144	[0.0097-0.0191] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1272	chr6	90127389	90127390	rs854917	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	6q15	NR	rs854917-T	0.74	1E-9		0.0128	[0.0086-0.017] unit decrease	NR [NR]	N
1272	chr6	90127389	90127390	rs854917	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	6q15		rs854917-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1273	chr6	90199507	90199508	rs149792516	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (hospitalized covid vs population)	613 European ancestry cases, 680,416 European ancestry controls, 140 Hispanic or Latin American cases, 94,327 Hispanic or Latin American controls, 49 Black or African American cases, 22,410 Black or African American controls	NA	6q15		rs149792516-?	NR	2E-6		0.7393359	[0.44-1.04] unit increase	Illumina [9875426] (imputed)	N
1273	chr6	90199507	90199508	rs149792516	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid respiratory support vs population)	495 European ancestry cases, 680,440 European ancestry controls, 102 Hispanic or Latin American cases, 94,330 Hispanic or Latin American controls, 39 Black or African American cases, 22,410 Black or African American controls	NA	6q15		rs149792516-?	NR	6E-6		0.7740405	[0.44-1.11] unit increase	Illumina [9842460] (imputed)	N
1273	chr6	90227208	90227209	rs78571182	28916551	Liu Y	2017-09-15	J Rheumatol	Genetic Determinants of Radiographic Knee Osteoarthritis in African Americans.	Knee osteoarthritis	742 African American cases, 475 African American controls	NA	6q15	ANKRD6	rs78571182-T	0.88	4E-7		2.08	[1.57-2.75]	Illumina [8300000] (imputed)	N
1273	chr6	90230665	90230666	rs762494139	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-hip ratio	1,254 whole genome sequenced European ancestry individuals, 3,071 whole genome sequenced individuals, 29,723 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,053 Mylopotamos (founder/genetic isolate) individuals, 879 Pomak (founder/genetic isolate) individuals	206,053 European ancestry individuals	6q15	ANKRD6	rs762494139-CT	0.9971	9E-6		0.5378	[0.3-0.77] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1273	chr6	90294243	90294244	rs79589376	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6q15	NR	rs79589376-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1273	chr6	90296887	90296888	rs4269347	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	6q15	NR	rs4269347-?	NR	7E-7		0.11745	[0.071-0.164] unit decrease	Affymetrix [7794483] (imputed)	N
1273	chr6	90296887	90296888	rs4269347	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	6q15	NR	rs4269347-?	NR	6E-6	(female)	0.11723	[0.067-0.168] unit decrease	Affymetrix [7794483] (imputed)	N
1273	chr6	90299209	90299210	rs6939321	23934736	Yu B	2013-08-11	Genet Epidemiol	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels (Pyroglutamine)	1,260 African American individuals	NA	6q15	ANKRD6	rs6939321-C		4E-6		0.16	[0.09-0.23] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1273	chr6	90307984	90307985	rs9359856	25827505	Swaminathan S	2015-03-14	J Affect Disord	Characteristics of Bipolar I patients grouped by externalizing disorders.	Bipolar disorder	472 non-externalizing cases, 796 externalizing cases	436 non-externalizing European ancestry cases, 801 externalizing European ancestry cases	6q15	ANKRD6	rs9359856-?		5E-6	(early-onset vs. non-externalizing)	1.6417665	[NR]	Affymetrix [677171]	N
1274	chr6	90310965	90310966	rs6454764	21810271	Antoni G	2011-08-02	BMC Med Genet	Combined analysis of three genome-wide association studies on vWF and FVIII plasma levels.	vWF and FVIII levels	1,624 European ancestry individuals	NA	6q15	ANKRD6	rs6454764-T	0.06	5E-6	(vWF levels)	0.31	[0.17-0.45] IU/dL increase	Illumina [442728]	N
1274	chr6	90314916	90314917	rs9351209	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	6q15	ANKRD6	rs9351209-?	NR	2E-8		0.0285168	[0.019-0.038] unit decrease	Illumina [4804024] (imputed)	N
1274	chr6	90321408	90321409	rs4707554	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	6q15		rs4707554-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1274	chr6	90322236	90322237	rs16882001	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	6q15	NA	rs16882001-A	0.9499	3E-9		0.0227	[0.015-0.03] unit decrease	NR [~ 27400000] (imputed)	N
1274	chr6	90324848	90324849	rs1179907	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	6q15	NA	rs1179907-A	0.8098	1E-8		0.0121	[0.008-0.0162] unit decrease	NR [~ 27400000] (imputed)	N
1274	chr6	90330598	90330599	rs76383471	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6q15	NR	rs76383471-?	NR	9E-9				Affymetrix [~ 8270000] (imputed)	N
1274	chr6	90344868	90344869	rs6905628	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	6q15		rs6905628-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1274	chr6	90344868	90344869	rs6905628	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	6q15	ANKRD6, LOC101929057, LYRM2, MDN1	rs6905628-C	0.31	4E-6		0.032	[0.018-0.046] unit increase	Affymetrix [7947838] (imputed)	N
1274	chr6	90371604	90371605	rs117472277	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mononucleosis	17,457 European ancestry cases, 68,446 European ancestry controls	NA	6q15	NR	rs117472277-?	NR	5E-6		0.1694	[0.097-0.241] unit increase	Illumina [at least 560000] (imputed)	N
1274	chr6	90395015	90395016	rs10484885	27958378	Floyd JS	2016-12-13	Pharmacogenomics J	Large-scale pharmacogenomic study of sulfonylureas and the QT, JT and QRS intervals: CHARGE Pharmacogenomics Working Group.	QRS interval (sulfonylurea treatment interaction)	2,095 European ancestry exposed individuals, 42,907 European ancestry unexposed individuals, 1,167 African American exposed individuals, 10,564 African American unexposed individuals, 794 Hispanic/Latino American exposed individuals, 14,330 Hispanic/Latino American unexposed individuals	NA	6q15	MDN1	rs10484885-?	NR	9E-7	(AA)	3.5	[2.13-4.87] ms increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1274	chr6	90396369	90396370	rs17293240	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	6q15		rs17293240-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1274	chr6	90425823	90425824	rs2748297	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	6q15	NR	rs2748297-?	NR	2E-8				Illumina [7760689] (imputed)	N
1274	chr6	90430324	90430325	rs72915912	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Endometrial cancer	909 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6q15	Intergenic	rs72915912-?		4E-6		2.73	[1.78-4.19]	Illumina [7645193] (imputed)	N
1275	chr6	90562680	90562681	rs117243822	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in non-diabetics	152,624 European ancestry individuals, 36,369 African American individuals	NA	6q15	CASP8AP2	rs117243822-T	0.986	5E-8		1.363	[0.87-1.85] unit increase	Affymetrix [NR] (imputed)	N
1275	chr6	90568829	90568830	rs111404313	29317602	Hall LS	2018-01-10	Transl Psychiatry	Genome-wide meta-analyses of stratified depression in Generation Scotland and UK Biobank.	Major depressive disorder	6,997 European ancestry female cases, 16,172 European ancestry female controls, 3,852 European ancestry male cases, 16,034 European ancestry male controls	NA	6q15	CASP8AP2	rs111404313-A	NR	4E-6	(females)	0.32	[0.18-0.46] unit decrease	Affymetrix, Illumina [7105178] (imputed)	N
1276	chr6	90577546	90577547	rs75601500	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		CASP8AP2	rs75601500-?	NR	4E-8		2.68481	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1276	chr6	90577601	90577602	rs60966143	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Endometrial cancer (MTAG)	909 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6q15	Intergenic	rs60966143-?		8E-6		1.15	[1.08-1.22]	Illumina [7645193] (imputed)	N
1276	chr6	90577601	90577602	rs60966143	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Endometrial cancer	909 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6q15	Intergenic	rs60966143-?		3E-6		2.73	[1.79-4.16]	Illumina [7645193] (imputed)	N
1276	chr6	90609190	90609191	rs62416030	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Cuneus cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	6q15	NR	rs62416030-?		3E-6				Illumina [4322238] (imputed)	N
1276	chr6	90616708	90616709	rs138866907	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	6q15	Intergenic	rs138866907-T	0.0222	1E-9	(MTAG)	0.0371	[0.025-0.049] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1276	chr6	90616708	90616709	rs138866907	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	6q15	Intergenic	rs138866907-C	0.9778	4E-11		0.0436	[0.031-0.057] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1276	chr6	90627772	90627773	rs62416056	30181573	Jing J	2018-09-04	Sci Rep	Genetics of serum urate concentrations and gout in a high-risk population, patients with chronic kidney disease.	Serum urate levels in chronic kidney disease	4,941 European ancestry cases	NA	6q15	BACH2	rs62416056-C	0.17	1E-7		0.23	[0.14-0.32] mg/dl increase	Illumina [9281895] (imputed)	N
1276	chr6	90640490	90640491	rs2289577	20125193	Cirulli ET	2010-02-03	Eur J Hum Genet	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American individuals, up to 74 South Asian ancestry individuals	NA	6q15	BACH2	rs2289577-?	NR	9E-6	(Animals)			Illumina [up to 563855]	N
1276	chr6	90657782	90657783	rs404256	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6q15	BACH2	rs404256-C	0.559129675122385	7E-9	(IGP7)	0.2094	[0.14-0.28] unit decrease	Illumina [~ 2500000] (imputed)	N
1276	chr6	90657782	90657783	rs404256	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6q15	BACH2	rs404256-C	0.55888563217352	5E-6	(IGP44)	0.1659	[0.095-0.237] unit increase	Illumina [~ 2500000] (imputed)	N
1276	chr6	90665772	90665773	rs17765610	23749187	Cortes A	2013-07-01	Nat Genet	Identification of multiple risk variants for ankylosing spondylitis through high-density genotyping of immune-related loci.	Ankylosing spondylitis	9,069 European ancestry cases, 1,550 East Asian ancestry cases, 13,578 European ancestry controls, 1,567 East Asian ancestry controls	NA	6q15	BACH2	rs17765610-G	0.118	5E-8		1.15		Illumina [128935]	N
1276	chr6	90665772	90665773	rs17765610	23749187	Cortes A	2013-07-01	Nat Genet	Identification of multiple risk variants for ankylosing spondylitis through high-density genotyping of immune-related loci.	Ankylosing spondylitis	9,069 European ancestry cases, 1,550 East Asian ancestry cases, 13,578 European ancestry controls, 1,567 East Asian ancestry controls	NA	6q15	BACH2	rs17765610-G	0.118	3E-8	(EA)	1.17		Illumina [128935]	N
1276	chr6	90681465	90681466	rs6917758	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6q15	BACH2	rs6917758-C	0.145	3E-6	(BMR )	0.04	[NR] kcal/d increase	Illumina [899892]	N
1276	chr6	90698273	90698274	rs12204127	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue/subcutaneous adipose tissue ratio	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	6q15	BACH2	rs12204127-T	0.20	6E-7	(overall)			Affymetrix, Illumina [2500000] (imputed)	N
1277	chr6	90719163	90719164	rs3857496	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6q15	NR	rs3857496-T	0.814	8E-9		1.116	[1.08-1.15]	Illumina [11270530] (imputed)	N
1277	chr6	90724854	90724855	rs9451316	30378284	Smajlagic D	2018-10-31	Brain Behav	Moderating effect of mode of delivery on the genetics of intelligence: Explorative genome-wide analyses in ALSPAC.	Full scale intelligence quotient (cesarean section interaction)	519 European ancestry child cases, 1,902 European ancestry child controls	NA	6q15	NR	rs9451316-T	NR	7E-6		1.86	[1.05-2.67] unit decrease	Illumina [2141747] (imputed)	N
1277	chr6	90734907	90734908	rs4388268	34834585	Zazuli Z	2021-11-20	J Pers Med	Association between Genetic Variants and Cisplatin-Induced Nephrotoxicity: A Genome-Wide Approach and Validation Study.	Cisplatin-induced nephrotoxicity (increased serum creatinine AKI-CTCAE)	608 European ancestry individuals	NA	6q15		rs4388268-G	NR	7E-7		3.9	[2.3-6.7]	Illumina [6500000] (imputed)	N
1277	chr6	90734907	90734908	rs4388268	34834585	Zazuli Z	2021-11-20	J Pers Med	Association between Genetic Variants and Cisplatin-Induced Nephrotoxicity: A Genome-Wide Approach and Validation Study.	Cisplatin-induced nephrotoxicity (decreased eGFR)	608 European ancestry individuals	NA	6q15		rs4388268-G	NR	4E-8		8.4	[5.42-11.38] decrease	Illumina [6500000] (imputed)	N
1277	chr6	90737915	90737916	rs116899739	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		BACH2	rs116899739-?	NR	7E-11		3.63435	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1277	chr6	90738276	90738277	rs72923978	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	6q15		rs72923978-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1277	chr6	90755351	90755352	rs17766774	22205395	Tekola Ayele F	2011-12-29	Immunogenetics	Genome-wide associated loci influencing interleukin (IL)-10, IL-1Ra, and IL-6 levels in African Americans.	Interleukin-6 levels	697 African American individuals	NA	6q15	BACH2	rs17766774-G	0.02	5E-6		0.34	unit decrease	Affymetrix [5396780] (imputed)	N
1277	chr6	90808351	90808352	rs12212535	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	6q15	NR	rs12212535-T	0.391082	2E-11		0.014547	[0.01-0.019] SD unit decrease	Affymetrix, Illumina [50036608] (imputed)	N
1277	chr6	90809638	90809639	rs7753008	22057235	Trynka G	2011-11-06	Nat Genet	Dense genotyping identifies and localizes multiple common and rare variant association signals in celiac disease.	Celiac disease	11,812 European ancestry cases, 229 Indian ancestry cases, 11,837 European ancestry controls, 391 Indian ancestry controls	NA	6q15	BACH2	rs7753008-C	0.38	3E-7		1.1		Illumina [139553]	N
1277	chr6	90821726	90821727	rs116122500	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	6q15	NR	rs116122500-?	NR	3E-6		0.038724	[0.023-0.055] unit increase	Affymetrix [805426] (imputed)	N
1277	chr6	90828881	90828882	rs207270	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6q15	NR	rs207270-?	NR	5E-9				Affymetrix [~ 8270000] (imputed)	N
1277	chr6	90831268	90831269	rs207277	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	6q15	BACH2	rs207277-A	0.493	8E-10		0.0073	[0.0049-0.0097] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
1278	chr6	90839263	90839264	rs182491379	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	6q15		rs182491379-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1278	chr6	90850163	90850164	rs2325259	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD80 on myeloid Dendritic Cell	2,871 Sardinian (founder/genetic isolate) ancestry individuals	NA	6q15		rs2325259-C	0.44218	1E-12		0.1995	[0.14-0.25] unit increase	Illumina [17926466] (imputed)	N
1278	chr6	90850729	90850730	rs79005509	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6q15	BACH2	rs79005509-T	0.0242	4E-6		0.1254	[0.072-0.179] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1278	chr6	90852257	90852258	rs12199079	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD80 on CD62L+ myeloid Dendritic Cell	2,871 Sardinian (founder/genetic isolate) ancestry individuals	NA	6q15		rs12199079-G	0.44218	8E-16		0.2265	[0.17-0.28] unit increase	Illumina [17926466] (imputed)	N
1278	chr6	90864869	90864870	rs17711850	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 1 diabetes	6,447 European ancestry cases, 451,248 European ancestry controls, 1,219 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	6q15		rs17711850-C	NR	2E-9		0.1236	[0.083-0.164] unit increase	Affymetrix, Illumina [25837106] (imputed)	N
1278	chr6	90864869	90864870	rs17711850	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	6q15		rs17711850-C	NR	7E-27		0.0282	[0.023-0.033] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
1278	chr6	90880034	90880035	rs2474619	24999842	Garner C	2014-07-07	PLoS One	Genome-wide association study of celiac disease in North America confirms FRMD4B as new celiac locus.	Celiac disease	1,550 European ancestry cases, 3,084 European ancestry controls	NA	6q15	BACH2	rs2474619-?	NR	2E-8		1.28	[1.18-1.41]	Illumina [517345]	N
1278	chr6	90880392	90880393	rs10944479	32041948	Sarin KY	2020-02-10	Nat Commun	Genome-wide meta-analysis identifies eight new susceptibility loci for cutaneous squamous cell carcinoma.	Cutaneous squamous cell carcinoma	19,149 European ancestry cases, 680,049 European ancestry controls	NA	6q15	BACH2	rs10944479-A	0.189	4E-9		0.09	[0.051-0.129] unit decrease	NR [13607369] (imputed)	N
1278	chr6	90880392	90880393	rs10944479	24586183	Medici M	2014-02-27	PLoS Genet	Identification of novel genetic Loci associated with thyroid peroxidase antibodies and clinical thyroid disease.	Thyroid peroxidase antibody positivity	1,769 European ancestry cases, 16,528 European ancestry controls	922 European ancestry cases, 8,068 European ancestry controls	6q15	BACH2	rs10944479-A	0.16	4E-8		1.25	[1.14-1.37]	Affymetrix, Illumina [up to 3437411] (imputed)	N
1278	chr6	90900163	90900164	rs556166031	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	6q15	BACH2	rs556166031-T	0.0019	2E-6		0.7654	[0.45-1.08] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1278	chr6	90902807	90902808	rs62408211	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	6q15	BACH2	rs62408211-T	0.3649	6E-12		0.02548358	[0.018-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
1278	chr6	90921739	90921740	rs370409	21841780	Chu X	2011-08-14	Nat Genet	A genome-wide association study identifies two new risk loci for Graves' disease.	Graves' disease	1,468 Chinese ancestry cases, 1,490 Chinese ancestry controls	3,994 Chinese ancestry cases, 3,510 Chinese ancestry controls	6q15	MAP3K7, BACH2	rs370409-T	0.67	2E-6		1.15	[1.09-1.22]	Illumina [486049]	N
1278	chr6	90926611	90926612	rs10806425	33574239	Eriksson D	2021-02-11	Nat Commun	GWAS for autoimmune Addison's disease identifies multiple risk loci and highlights AIRE in disease susceptibility.	Addison's disease	1,223 European ancestry cases, 4,097 European ancestry controls	NA	6q15	BACH2	rs10806425-A	0.37	3E-27		1.69	[1.53-1.85]	Illumina [7068382] (imputed)	N
1278	chr6	90926611	90926612	rs10806425	31102405	Labreche K	2019-05-17	Neuro Oncol	A genome-wide association study identifies susceptibility loci for primary central nervous system lymphoma at 6p25.3 and 3p22.1: a LOC network study.	Primary central nervous system lymphoma	475 European ancestry cases, 1,134 European ancestry controls	NA	6q15	BACH2	rs10806425-C	0.58	1E-7		1.51	[1.30-1.77]	Illumina [> 10000000] (imputed)	N
1278	chr6	90926611	90926612	rs10806425	20190752	Dubois PC	2010-02-28	Nat Genet	Multiple common variants for celiac disease influencing immune gene expression.	Celiac disease	4,533 European ancestry cases, 10,750 European ancestry controls	4,918 European ancestry cases, 5,684 European ancestry controls	6q15	MAP3K7, BACH2	rs10806425-A	0.40	4E-10		1.13	[1.09-1.17]	Illumina [292387]	N
1278	chr6	90927727	90927728	rs206916	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6q15	BACH2	rs206916-C	0.656205	4E-10		0.015431736	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1278	chr6	90930512	90930513	rs72925996	31959851	Olafsdottir TA	2020-01-20	Nat Commun	Eighty-eight variants highlight the role of T cell regulation and airway remodeling in asthma pathogenesis.	Asthma	16,247 European ancestry cases, 346,486 European ancestry controls, 52,942 cases, 355,713 controls	NA	6q15	BACH2, MIR4464, MAP3K7, GJA10, CASP8AP2, MDN1	rs72925996-T	0.64958	5E-27		1.0740907	[1.06-1.09]	Affymetrix [32463443] (imputed)	N
1278	chr6	90930512	90930513	rs72925996	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Respiratory diseases	approximately 459,000 European ancestry individuals	NA	6q15		rs72925996-?	NR	3E-26				NR [~ 8900000] (imputed)	N
1278	chr6	90935382	90935383	rs60066732	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	6q15	BACH2	rs60066732-G	0.362057	5E-31		0.026725467	[0.022-0.031] unit increase	Affymetrix [93095623] (imputed)	N
1278	chr6	90935382	90935383	rs60066732	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	6q15		rs60066732-?	NR	9E-24				NR [~ 8900000] (imputed)	N
1278	chr6	90936893	90936894	rs206913	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	6q15	BACH2	rs206913-A	0.6202	9E-10		0.0221784	[0.015-0.029] unit increase	Affymetrix [~ 2500000] (imputed)	N
1278	chr6	90944830	90944831	rs17585295	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	6q15	BACH2	rs17585295-T	0.3593	1E-28		0.04126059	[0.034-0.049] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1278	chr6	90944830	90944831	rs17585295	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	6q15	BACH2	rs17585295-T	0.3592	5E-20		0.03413731	[0.027-0.041] unit increase	Affymetrix [~ 2500000] (imputed)	N
1278	chr6	90946478	90946479	rs4707609	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	6q15	BACH2	rs4707609-C	0.362093	2E-11		0.015407576	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1278	chr6	90946478	90946479	rs4707609	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	6q15	NR	rs4707609-C	0.360123	3E-28		0.021092	[0.017-0.025] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1278	chr6	90946478	90946479	rs4707609	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q15	NR	rs4707609-C	0.322135	5E-12				Affymetrix, Illumina [23114412] (imputed)	N
1278	chr6	90946478	90946479	rs4707609	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	6q15	NR	rs4707609-C	0.360987	3E-13		0.01454	[0.011-0.018] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
1278	chr6	90948092	90948093	rs58453446	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	6q15	BACH2	rs58453446-C	0.346686	8E-41		0.03101161	[0.026-0.036] unit increase	Affymetrix [93095623] (imputed)	N
1278	chr6	90951521	90951521	rs574645080	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	6q15	BACH2	rs574645080-GA	0.347165	1E-10		0.015118464	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1278	chr6	90955994	90955995	rs62408224	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Nasal polyps	5,093 European ancestry cases, 444,966 European ancestry controls, 160 East Asian ancestry cases, 151,846 East Asian ancestry controls	NA	6q15		rs62408224-G	NR	1E-17		0.1892	[0.15-0.23] unit decrease	Affymetrix, Illumina [25837843] (imputed)	N
1278	chr6	90955994	90955995	rs62408224	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	6q15	NR	rs62408224-G	0.350368	6E-92		0.042179	[0.038-0.046] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
1278	chr6	90956408	90956409	rs62408225	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6q15		rs62408225-A	0.648	1E-43				Affymetrix [10369434] (imputed)	N
1278	chr6	90956408	90956409	rs62408225	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6q15	BACH2	rs62408225-G	0.350845	5E-74		0.04203941	[0.038-0.047] unit decrease	Affymetrix [93095623] (imputed)	N
1278	chr6	90956408	90956409	rs62408225	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q15	NR	rs62408225-G	0.296236	1E-88				Affymetrix, Illumina [19872809] (imputed)	N
1278	chr6	90956408	90956409	rs62408225	30643255	Kristjansson RP	2019-01-14	Nat Genet	A loss-of-function variant in ALOX15 protects against nasal polyps and chronic rhinosinusitis.	Nasal polyps	86 European ancestry whole-genome sequenced cases, 4,280 European ancestry cases, 13,941 European ancestry whole-genome sequenced controls, 700,740 European ancestry controls	NA	6q15	BACH2	rs62408225-A	0.656	8E-8		1.1363636	[1.09-1.19]	Affymetrix, Illumina [up to 37123566] (imputed)	N
1278	chr6	90956408	90956409	rs62408225	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	6q15		rs62408225-?	NR	4E-79				NR [~ 8900000] (imputed)	N
1278	chr6	90956408	90956409	rs62408225	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	6q15	BACH2	rs62408225-G	0.3514	2E-20		0.03452908	[0.027-0.042] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1278	chr6	90956408	90956409	rs62408225	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	6q15	BACH2	rs62408225-G	0.3513	2E-19		0.03360406	[0.026-0.041] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1278	chr6	90956408	90956409	rs62408225	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	6q15	BACH2	rs62408225-G	0.3515	1E-27		0.04055992	[0.033-0.048] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1278	chr6	90957462	90957463	rs3757247	22561518	Jin Y	2012-05-06	Nat Genet	Genome-wide association analyses identify 13 new susceptibility loci for generalized vitiligo.	Vitiligo	418 European ancestry cases, 2,810 European ancestry controls	1,377 European ancestry cases, 1,284 European ancestry controls	6q15	BACH2	rs3757247-A	0.47	3E-8		1.2	[NR]	Illumina [495821]	N
1278	chr6	90957462	90957463	rs3757247	18840781	Grant SF	2008-10-07	Diabetes	Follow-up analysis of genome-wide association data identifies novel loci for type 1 diabetes.	Type 1 diabetes	563 European ancestry cases, 1,146 European ancestry controls, 483 European ancestry trios	3,303 European ancestry cases, 4,673 European ancestry controls	6q15	BACH2	rs3757247-A	NR	1E-6		1.13	[1.08-1.19]	Illumina [up to 1000000]	N
1278	chr6	90958230	90958231	rs11755527	30254083	Cousminer DL	2018-09-25	Diabetes Care	First Genome-Wide Association Study of Latent Autoimmune Diabetes in Adults Reveals Novel Insights Linking Immune and Metabolic Diabetes.	Latent autoimmune diabetes	2,634 European ancestry cases, 5,947 European ancestry controls	345 European ancestry cases, 1,664 European ancestry controls	6q15	BACH2	rs11755527-?	0.443857	1E-7		1.203898	[1.125016-1.288312]	Affymetrix, Illumina [7868002] (imputed)	N
1278	chr6	90958230	90958231	rs11755527	21829393	Plagnol V	2011-08-04	PLoS Genet	Genome-wide association analysis of autoantibody positivity in type 1 diabetes cases.	Type 1 diabetes	8,506 European ancestry cases, up to 10,596 European ancestry controls	NA	6q15	BACH2	rs11755527-G	NR	3E-8		1.1	[NR]	Affymetrix, Illumina [NR]	N
1278	chr6	90958230	90958231	rs11755527	21829393	Plagnol V	2011-08-04	PLoS Genet	Genome-wide association analysis of autoantibody positivity in type 1 diabetes cases.	Thyroid peroxidase autoantibody levels in type 1 diabetes	8,300 European ancestry cases	NA	6q15	BACH2	rs11755527-G		1E-6		1.2		Affymetrix, Illumina [NR]	N
1278	chr6	90958230	90958231	rs11755527	19430480	Barrett JC	2009-05-10	Nat Genet	Genome-wide association study and meta-analysis find that over 40 loci affect risk of type 1 diabetes.	Type 1 diabetes	7,514 European ancestry cases, 9,045 European ancestry controls	4,267 European ancestry cases, 4,670 European ancestry controls, 4,342 European ancestry trios from 2,319 families	6q15	BACH2	rs11755527-?	NR	5E-8				Affymetrix, Illumina [841622] (imputed)	N
1278	chr6	90958230	90958231	rs11755527	18978792	Cooper JD	2008-11-02	Nat Genet	Meta-analysis of genome-wide association study data identifies additional type 1 diabetes risk loci.	Type 1 diabetes	3,561 European ancestry cases, 4,646 European ancestry controls	6,225 European ancestry cases, 6,946 European ancestry controls, 3,064 European ancestry trios from 2,828 families	6q15	BACH2	rs11755527-G	0.47	5E-12		1.13	[1.08-1.19]	Affymetrix [up to 335565]	N
1278	chr6	90958501	90958502	rs905670	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	6q15		rs905670-A	NR	5E-52		0.0277	[0.024-0.031] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
1278	chr6	90958501	90958502	rs905670	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	6q15	BACH2	rs905670-A	0.350954	3E-16		0.018571293	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1278	chr6	90958501	90958502	rs905670	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	6q15	BACH2	rs905670-A	0.350825	8E-54		0.035711613	[0.031-0.04] unit decrease	Affymetrix [93095623] (imputed)	N
1278	chr6	90958501	90958502	rs905670	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6q15	NR	rs905670-G	0.648	5E-18		1.055409	[1.04-1.07]	Affymetrix [15688218] (imputed)	N
1278	chr6	90958501	90958502	rs905670	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic disease (asthma, hay fever or eczema)	106,772 European ancestry cases, 239,773 European ancestry controls	83,335 cases, 34,934 controls	6q15	NR	rs905670-G	0.648	8E-23		1.0577533	[1.05-1.07]	Affymetrix [15688218] (imputed)	N
1278	chr6	90958501	90958502	rs905670	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	6q15		rs905670-?	NR	1E-18				NR [~ 8900000] (imputed)	N
1278	chr6	90960875	90960875	rs530852248	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	6q15		rs530852248-CT	NR	7E-15		0.0197	[0.015-0.025] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
1278	chr6	90963614	90963614	rs148639908	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pediatric asthma	27,712 European ancestry cases, 411,131 European ancestry controls, 547 East Asian ancestry cases, 161,803 East Asian ancestry controls	NA	6q15		rs148639908-AT	NR	1E-20		0.0911	[0.072-0.11] unit decrease	Affymetrix, Illumina [25832605] (imputed)	N
1278	chr6	90963614	90963614	rs148639908	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Asthma	38,369 European ancestry cases, 411,131 European ancestry controls, 13,015 East Asian ancestry cases, 162,933 East Asian ancestry controls	NA	6q15		rs148639908-AT	NR	9E-24		0.0847	[0.068-0.101] unit decrease	Affymetrix, Illumina [25837673] (imputed)	N
1278	chr6	90963614	90963614	rs148639908	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6q15	BACH2	rs148639908-AT	0.352377	4E-22		0.022250677	[0.018-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1279	chr6	90968948	90968949	rs619192	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28 on resting CD4 regulatory T cell	2,919 Sardinian (founder/genetic isolate) ancestry individuals	NA	6q15		rs619192-T	0.7240500000000001	3E-10		0.1987	[0.14-0.26] unit increase	Illumina [17954460] (imputed)	N
1279	chr6	90968948	90968949	rs619192	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28 on CD28+ CD45RA+ CD8+ T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	6q15		rs619192-T	0.72414	3E-10		0.1991	[0.14-0.26] unit increase	Illumina [17954496] (imputed)	N
1279	chr6	90973158	90973159	rs1847472	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	6q15	BACH2	rs1847472-?		2E-9				Illumina [9725440] (imputed)	N
1279	chr6	90973158	90973159	rs1847472	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	6q15	BACH2	rs1847472-?		6E-9				Illumina [9560910] (imputed)	N
1279	chr6	90973158	90973159	rs1847472	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	6q15	BACH2	rs1847472-?	NR	5E-10	(subset analysis)			Illumina [130052]	N
1279	chr6	90973158	90973159	rs1847472	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	6q15	NR	rs1847472-C	0.66	7E-10	(EA)	1.0695955		Affymetrix, Illumina [~ 9000000] (imputed)	N
1279	chr6	90973158	90973159	rs1847472	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	6q15	NR	rs1847472-C	0.66	1E-10	(EA)	1.0891367	[1.06-1.12]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1279	chr6	90973158	90973159	rs1847472	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	6q15	intergenic	rs1847472-C	0.655	2E-10		1.06	[1.029-1.092]	Affymetrix, Illumina [1230000] (imputed)	N
1279	chr6	90973158	90973159	rs1847472	21102463	Franke A	2010-11-21	Nat Genet	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry trios	6q15	BACH2	rs1847472-G	0.658	5E-9		1.07	[1.03-1.11]	Affymetrix, Illumina [953241] (imputed)	N
1279	chr6	90975998	90975999	rs661713	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Hypothyroidism	17,558 European ancestry cases, 117,083 European ancestry controls	NA	6q15	BACH2	rs661713-?	NR	2E-7		1.0695187	[1.04-1.10]	Illumina [13676411] (imputed)	N
1279	chr6	90976608	90976609	rs62408233	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma onset (childhood vs adult)	13,962 European ancestry childhood onset cases, 14,873 European ancestry adult onset cases	31,002 European ancestry childhood onset cases, 16,297 European ancestry adult onset cases	6q15	BACH2	rs62408233-G	0.643	3E-7		1.056	[1.03-1.08]	Affymetrix [9000000] (imputed)	N
1279	chr6	90976608	90976609	rs62408233	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	6q15	BACH2	rs62408233-?	NR	3E-38		1.103	[1.09-1.12]	Affymetrix [9000000] (imputed)	N
1279	chr6	90976608	90976609	rs62408233	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	6q15	BACH2	rs62408233-G	NR	1E-28		1.082	[1.07-1.1]	Affymetrix [9000000] (imputed)	N
1279	chr6	90976767	90976768	rs72928038	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	6q15		rs72928038-A	NR	1E-20		0.0288	[0.023-0.035] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
1279	chr6	90976767	90976768	rs72928038	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6q15		rs72928038-G	0.82	4E-14				Affymetrix [10369434] (imputed)	N
1279	chr6	90976767	90976768	rs72928038	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6q15		rs72928038-?	NR	3E-13		0.900021	[0.87-0.93]	NR [685523]	N
1279	chr6	90976767	90976768	rs72928038	33549134	Adolphe C	2021-02-06	Genome Med	Genetic and functional interaction network analysis reveals global enrichment of regulatory T cell genes influencing basal cell carcinoma susceptibility.	Basal cell carcinoma	17,416 European ancestry cases, 375,455 European ancestry controls	NA	6q15	BACH2	rs72928038-A	0.179729	3E-17		0.12350243	[0.095-0.152] unit decrease	Affymetrix [7260263] (imputed)	N
1279	chr6	90976767	90976768	rs72928038	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28 on resting CD4 regulatory T cell	2,919 Sardinian (founder/genetic isolate) ancestry individuals	NA	6q15		rs72928038-A	0.19904	2E-55		0.5273	[0.46-0.59] unit increase	Illumina [17954460] (imputed)	N
1279	chr6	90976767	90976768	rs72928038	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28 on CD45RA+ CD4+ T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	6q15		rs72928038-A	0.19897	2E-26		0.3653	[0.3-0.43] unit increase	Illumina [17954496] (imputed)	N
1279	chr6	90976767	90976768	rs72928038	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28 on CD4+ T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	6q15		rs72928038-A	0.19897	9E-12		0.233	[0.17-0.3] unit increase	Illumina [17954496] (imputed)	N
1279	chr6	90976767	90976768	rs72928038	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28 on CD28+ CD45RA+ CD8+ T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	6q15		rs72928038-A	0.19897	5E-67		0.5885	[0.52-0.65] unit increase	Illumina [17954496] (imputed)	N
1279	chr6	90976767	90976768	rs72928038	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28 on CD28+ CD4+ T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	6q15		rs72928038-A	0.19897	2E-13		0.2512	[0.18-0.32] unit increase	Illumina [17954496] (imputed)	N
1279	chr6	90976767	90976768	rs72928038	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6q15	BACH2	rs72928038-A	0.178824	4E-22		0.029495386	[0.024-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
1279	chr6	90976767	90976768	rs72928038	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q15	NR	rs72928038-A	0.170688	2E-37				Affymetrix, Illumina [23472807] (imputed)	N
1279	chr6	90976767	90976768	rs72928038	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	6q15	NR	rs72928038-A	0.176926	4E-41		0.033322	[0.028-0.038] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1279	chr6	90976767	90976768	rs72928038	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	6q15	BACH2	rs72928038-A	NR	8E-29		1.1543345	NR	Affymetrix, Illumina [8278136] (imputed)	N
1279	chr6	90976767	90976768	rs72928038	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Squamous cell carcinoma	9,674 European ancestry cases, 625,657 European ancestry controls	NA	6q15	BACH2	rs72928038-G	NR	5E-7		1.11	[1.07-1.16]	Affymetrix, Illumina [up to 9061544] (imputed)	N
1279	chr6	90976767	90976768	rs72928038	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Keratinocyte cancer (MTAG)	at least 18,538 European ancestry cases, at least 340,302 European ancestry controls	NA	6q15	BACH2	rs72928038-G	0.819182	1E-20		1.11	[1.09-1.14]	Affymetrix [7600000] (imputed)	N
1279	chr6	90976767	90976768	rs72928038	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Autoimmune traits	approximately 459,000 European ancestry individuals	NA	6q15		rs72928038-?	NR	5E-23				NR [~ 8900000] (imputed)	N
1279	chr6	90976767	90976768	rs72928038	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Type 1 diabetes	6,670 European ancestry cases, 22,308 European ancestry controls	NA	6q15	BACH2	rs72928038-A	0.177	1E-11		1.217		Illumina [252970]	N
1279	chr6	90976767	90976768	rs72928038	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Rheumatoid arthritis	15,523 European ancestry cases, 22,308 European ancestry controls	NA	6q15	BACH2	rs72928038-A	0.165	2E-8		1.1289477		Illumina [252970]	N
1279	chr6	90976767	90976768	rs72928038	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Celiac disease	11,489 European ancestry cases, 22,308 European ancestry controls	NA	6q15	BACH2	rs72928038-A		4E-7		1.1287999		Illumina [252970]	N
1279	chr6	90976767	90976768	rs72928038	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Autoimmune traits (pleiotropy)	11,489 European ancestry cases with celiac disease, 15,523 European ancestry cases with rheumatoid arthritis, 3,477 European ancestry cases with systemic sclerosis, 6,670 European ancestry cases with type 1 diabetes, 22,308 European ancestry controls	NA	6q15	BACH2	rs72928038-A	NA	9E-12				Illumina [252970]	N
1279	chr6	90976767	90976768	rs72928038	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Non-melanoma skin cancer	5,912 European ancestry cases, 181,740 European ancestry controls		6q15	NR	rs72928038-A	NR	1E-6		1.13286	[1.07758-1.19096]	Affymetrix [5734850] (imputed)	N
1279	chr6	90976767	90976768	rs72928038	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	6q15	BACH2	rs72928038-G	NR	8E-6		0.0345724	[0.019-0.05] unit decrease	Illumina [13520550] (imputed)	N
1279	chr6	90976767	90976768	rs72928038	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	6q15	BACH2	rs72928038-A	0.1783	4E-13		0.03408429	[0.025-0.043] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1279	chr6	90976767	90976768	rs72928038	27723757	Jin Y	2016-11-01	Nat Genet	Genome-wide association studies of autoimmune vitiligo identify 23 new risk loci and highlight key pathways and regulatory variants.	Vitiligo	2,853 European ancestry cases and 37,405 European ancestry controls	1,827 European ancestry cases and 2,181 European ancestry controls	6q15	BACH2	rs72928038-A	0.1706	1E-14		1.268	[1.19-1.35]	Illumina [8966411] (imputed)	N
1279	chr6	90976767	90976768	rs72928038	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	6q15	BACH2	rs72928038-?	NR	2E-10	(subset analysis)			Illumina [130052]	N
1279	chr6	90976767	90976768	rs72928038	26546613	Gutierrez-Achury J	2016-01-01	Hum Mol Genet	Functional implications of disease-specific variants in loci jointly associated with coeliac disease and rheumatoid arthritis.	Celiac disease and Rheumatoid arthritis	371 South Asian ancestry celiac disease cases, 3,138 European ancestry celiac disease cases,  4,418 European ancestry rheumatoid arthritis cases,  509 South Asian ancestry celiac disease controls, 2,473 European ancestry celiac disease controls, 3,300 European ancestry rheumatoid arthritis controls, 8,872 celiac disease cases, 9,401 rheumatoid arthritis cases, 4,845 celiac disease controls, 9,627 rheumatoid arthritis controls	NA	6q15	BACH2	rs72928038-?	NR	4E-11		1.13		Illumina [109572]	N
1279	chr6	90976767	90976768	rs72928038	25751624	Onengut-Gumuscu S	2015-04-01	Nat Genet	Fine mapping of type 1 diabetes susceptibility loci and evidence for colocalization of causal variants with lymphoid gene enhancers.	Type 1 diabetes	6,683 European ancestry cases, 12,173 European ancestry controls, 2,601 European ancestry affected sibling pair families, 69 European ancestry trios	NA	6q15	BACH2	rs72928038-A	0.17	6E-14		1.2		Illumina [135870]	N
1279	chr6	90976767	90976768	rs72928038	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	6q15	BACH2	rs72928038-A	0.19	2E-15		1.14		Illumina [161311]	N
1279	chr6	90976767	90976768	rs72928038	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis	up to 13,838 European ancestry cases, up to 33,742 European ancestry controls	NA	6q15	BACH2	rs72928038-A	NR	8E-7		1.1282		Illumina [129464] (imputed)	N
1279	chr6	90976767	90976768	rs72928038	22922229	Cooper JD	2012-12-01	Hum Mol Genet	Seven newly identified loci for autoimmune thyroid disease.	Graves' disease	2,285 European ancestry cases, 9,364 European ancestry controls	NA	6q15	BACH2	rs72928038-A	0.177	4E-6		1.21	[1.12-1.32]	Illumina [103875]	N
1279	chr6	90976767	90976768	rs72928038	22922229	Cooper JD	2012-12-01	Hum Mol Genet	Seven newly identified loci for autoimmune thyroid disease.	Autoimmune thyroid diseases (Graves disease or Hashimoto's thyroiditis)	2,282 European ancestry Graves disease cases, 451 European ancestry Hashimoto's thyroiditis cases, 9364 European ancestry controls	NA	6q15	BACH2	rs72928038-A	0.177	1E-7		1.23	[1.14-1.32]	Illumina [103875]	N
1279	chr6	90981085	90981087	rs536304170	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	6q15		rs536304170-T	NR	6E-16		0.02	[0.015-0.025] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1279	chr6	90981085	90981087	rs536304170	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	6q15	BACH2	rs536304170-T	0.405639	2E-9		0.013877621	[0.0094-0.0184] unit decrease	Affymetrix [93095623] (imputed)	N
1279	chr6	90981318	90981319	rs55771973	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	6q15	BACH2	rs55771973-G	0.3541	2E-25				Affymetrix [15688218] (imputed)	N
1279	chr6	90981318	90981319	rs55771973	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	6q15		rs55771973-?	NR	2E-15				NR [~ 8900000] (imputed)	N
1279	chr6	90985197	90985198	rs58521088	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma onset (childhood vs adult)	13,962 European ancestry childhood onset cases, 14,873 European ancestry adult onset cases	31,002 European ancestry childhood onset cases, 16,297 European ancestry adult onset cases	6q15	BACH2	rs58521088-A	0.643	3E-7		1.057	[1.04-1.08]	Affymetrix [9000000] (imputed)	N
1279	chr6	90985197	90985198	rs58521088	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (adult onset)	26,582 European ancestry cases, 300,671 European ancestry controls	16,297 European ancestry cases, 217,711 European ancestry controls	6q15	BACH2	rs58521088-?	NR	3E-14		1.058	[1.04-1.07]	Affymetrix [9000000] (imputed)	N
1279	chr6	90985197	90985198	rs58521088	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	6q15	BACH2	rs58521088-A	NR	7E-29		1.082	[1.07-1.1]	Affymetrix [9000000] (imputed)	N
1279	chr6	90985197	90985198	rs58521088	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Asthma	28,399 European ancestry cases, 128,843 European ancestry controls	NA	6q15	BACH2	rs58521088-?	NR	7E-11		1.0706638	[1.05-1.09]	Illumina [13747813] (imputed)	N
1279	chr6	90985687	90985688	rs371337998	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	6q15		rs371337998-T	NR	7E-10		0.0132	[0.0091-0.0173] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
1279	chr6	90986319	90986320	rs604912	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hyperthyroidism	3,557 European ancestry cases, 456,942 European ancestry controls, 994 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	6q15		rs604912-G	NR	3E-8		0.1198	[0.077-0.162] unit increase	Affymetrix, Illumina [25841580] (imputed)	N
1279	chr6	90986352	90986353	rs6454805	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	6q15	NR	rs6454805-?	NR	2E-15				Affymetrix [~ 8270000] (imputed)	N
1279	chr6	90986558	90986559	rs6899623	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	6q15	NR	rs6899623-?	NR	1E-12				Affymetrix [~ 8270000] (imputed)	N
1279	chr6	90986558	90986559	rs6899623	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	6q15	BACH2, MIR4464	rs6899623-A	0.645577	9E-24		1.0659981	[1.05-1.08]	Affymetrix [8274727] (imputed)	N
1279	chr6	90986685	90986686	rs2325291	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls, 2,149 African ancestry cases, 6,055 African ancestry controls, 1,239 Japanese ancestry cases, 3,976 Japanese ancestry controls, 606 Latino cases, 792 Latino controls	NA	6q15	BACH2, GJA10, MAP3K7	rs2325291-G	0.6699999999999999	2E-12		1.098901	[1.06-1.12]	Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
1279	chr6	90986685	90986686	rs2325291	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls	NA	6q15	BACH2, GJA10, MAP3K7	rs2325291-A	0.33	9E-13		0.1	[0.08-0.12] unit decrease	Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
1279	chr6	90987511	90987512	rs2134814	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	6q15		rs2134814-C	0.646	5E-16		0.09	[-0.11--0.07] % decrease	Affymetrix [NR] (imputed)	N
1279	chr6	90987511	90987512	rs2134814	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	6q15	BACH2	rs2134814-G	0.353009	3E-26		0.023478493	[0.019-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1279	chr6	90987511	90987512	rs2134814	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	6q15		rs2134814-?	NR	2E-21				NR [~ 8900000] (imputed)	N
1279	chr6	90987511	90987512	rs2134814	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	6q15	BACH2	rs2134814-C	0.65	2E-17		1.046	[1.04-1.06]	Affymetrix, Illumina [8307659] (imputed)	N
1279	chr6	90989124	90989125	rs7754251	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	6q15		rs7754251-C	NR	9E-41		0.1164	[0.099-0.133] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1279	chr6	90989124	90989125	rs7754251	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hashimoto thyroiditis	15,654 European ancestry cases, 379,986 European ancestry controls, 537 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	6q15		rs7754251-C	NR	2E-9		0.0986	[0.066-0.131] unit increase	Affymetrix, Illumina [25797652] (imputed)	N
1279	chr6	90989124	90989125	rs7754251	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Graves' disease	1,678 European ancestry cases, 456,942 European ancestry controls, 2,809 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	6q15		rs7754251-C	NR	7E-9		0.1312	[0.087-0.176] unit increase	Affymetrix, Illumina [25841587] (imputed)	N
1279	chr6	90989124	90989125	rs7754251	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	6q15	BACH2	rs7754251-G	0.418931	1E-39		0.12090885	[0.1-0.14] unit decrease	Affymetrix [7288503] (imputed)	N
1279	chr6	90989124	90989125	rs7754251	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	6q15		rs7754251-?	NR	2E-39				NR [~ 8900000] (imputed)	N
1279	chr6	90990049	90990050	rs654537	32581359	Saevarsdottir S	2020-06-24	Nature	FLT3 stop mutation increases FLT3 ligand level and risk of autoimmune thyroid disease.	Autoimmune thyroid disease	30,234 European ancestry cases, 724,172 European ancestry controls	NA	6q15	BACH2	rs654537-A	0.617	6E-42		1.1363636	[NR]	Affymetrix, Illumina [42900000] (imputed)	N
1279	chr6	90996348	90996349	rs4142967	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q15	NR	rs4142967-T	0.369719	1E-26				Affymetrix, Illumina [24649327] (imputed)	N
1279	chr6	90996768	90996769	rs12212193	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6q15	NR	rs12212193-?	NR	2E-20				Affymetrix [~ 8270000] (imputed)	N
1279	chr6	90996768	90996769	rs12212193	21833088	Sawcer S	2011-08-11	Nature	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	6q15	BACH2	rs12212193-G	NR	4E-8		1.09	[1.08-1.1]	Illumina [465434]	N
1279	chr6	91001332	91001334	rs1198807554	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	6q15	BACH2	rs1198807554-CA	0.626745	8E-38		1.0839757	[1.07073315781421-1.0973820825032]	NR [9572556] (imputed)	N
1279	chr6	91001332	91001333	rs367983479	34103634	Valette K	2021-06-08	Commun Biol	Prioritization of candidate causal genes for asthma in susceptibility loci derived from UK Biobank.	Asthma	56,167 White-British ancestry cases, 352,255 White-British ancestry controls	NA	6q15	BACH2	rs367983479-C	0.384282927855841	1E-25		0.07075755	[0.058-0.084] unit decrease	Affymetrix [35186738] (imputed)	N
1279	chr6	91001332	91001333	rs367983479	30552067	Shrine N	2018-12-11	Lancet Respir Med	Moderate-to-severe asthma in individuals of European ancestry: a genome-wide association study.	Asthma (moderate or severe)	5,135 European ancestry cases, 25,675 European ancestry controls	5,414 European ancestry cases, 21,471 European ancestry controls	6q15	BACH2	rs367983479-CA	0.615	6E-11		1.1111112	[1.08-1.15]	Affymetrix [33771858] (imputed)	N
1279	chr6	91001332	91001333	rs367983479	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	6q15	BACH2	rs367983479-C	0.3826	1E-9		0.02279967	[0.015-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1279	chr6	91002493	91002494	rs597325	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6q15	BACH2	rs597325-A	0.548	5E-11		0.906	[0.88-0.94]	Illumina [11270530] (imputed)	N
1279	chr6	91002493	91002494	rs597325	27399966	Morris DL	2016-07-11	Nat Genet	Genome-wide association meta-analysis in Chinese and European individuals identifies ten new loci associated with systemic lupus erythematosus.	Systemic lupus erythematosus	1,659 Chinese ancestry cases, 3,398 Chinese ancestry controls, 4,036 European ancestry cases, 6,959 European ancestry controls	3,043 Chinese ancestry cases, 5,074 Chinese ancestry controls, 2,643 European ancestry cases, 9,032 European ancestry controls	6q15	BACH2	rs597325-G	0.615	4E-12		1.1235955	[1.09-1.16]	NR [6344733] (imputed)	N
1279	chr6	91002493	91002494	rs597325	27399966	Morris DL	2016-07-11	Nat Genet	Genome-wide association meta-analysis in Chinese and European individuals identifies ten new loci associated with systemic lupus erythematosus.	Systemic lupus erythematosus	1,659 Chinese ancestry cases, 3,398 Chinese ancestry controls, 4,036 European ancestry cases, 6,959 European ancestry controls	3,043 Chinese ancestry cases, 5,074 Chinese ancestry controls, 2,643 European ancestry cases, 9,032 European ancestry controls	6q15	BACH2	rs597325-G	0.48	1E-10	(Chinese)	1.1904762	[1.12-1.25]	NR [6344733] (imputed)	N
1279	chr6	91005742	91005743	rs6908626	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Skin cancer	25,928 European ancestry cases, 466,275 European ancestry controls, 154 East Asian ancestry cases, 178,572 East Asian ancestry controls	NA	6q15		rs6908626-T	NR	3E-11		0.0842	[0.059-0.109] unit decrease	Affymetrix, Illumina [25845421] (imputed)	N
1279	chr6	91005742	91005743	rs6908626	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hypothyroidism	30,155 European ancestry cases, 379,986 European ancestry controls, 1,114 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	6q15		rs6908626-T	NR	2E-24		0.1441	[0.12-0.17] unit increase	Affymetrix, Illumina [25801083] (imputed)	N
1279	chr6	91005742	91005743	rs6908626	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	6q15	BACH2	rs6908626-T	0.178171	2E-10		0.018583471	[0.013-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1279	chr6	91005742	91005743	rs6908626	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous malignant melanoma	36,760 European ancestry cases, 375,188 European ancestry controls	NA	6q15	BACH2	rs6908626-G	0.844	4E-9		1.0861	NR	Affymetrix, Illumina [NR] (imputed)	N
1279	chr6	91005742	91005743	rs6908626	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6q15	NR	rs6908626-?	NR	5E-15				Affymetrix [~ 8270000] (imputed)	N
1279	chr6	91005742	91005743	rs6908626	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Basal cell carcinoma	31,787 European ancestry cases, 619,351 European ancestry controls	NA	6q15	BACH2	rs6908626-G	0.843994	7E-20		1.1111112	[1.09-1.14]	Affymetrix, Illumina [up to 9061544] (imputed)	N
1279	chr6	91006226	91006227	rs1504215	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (glucocorticoids)	17,352 European ancestry cases, 188,348 European ancestry controls, 13,102 East Asian ancestry cases, 165,624 East Asian ancestry controls	NA	6q15		rs1504215-A	NR	1E-13		0.087	[0.064-0.11] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1279	chr6	91006226	91006227	rs1504215	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (adrenergics, inhalants)	28,880 European ancestry cases, 147,565 European ancestry controls, 5,880 East Asian ancestry cases, 172,846 East Asian ancestry controls	NA	6q15		rs1504215-A	NR	1E-18		0.0832	[0.065-0.102] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1279	chr6	91006226	91006227	rs1504215	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	6q15	NR	rs1504215-A	0.346442	2E-24		0.019813	[0.016-0.024] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1279	chr6	91006226	91006227	rs1504215	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q15	NR	rs1504215-A	0.338542	2E-10				Affymetrix, Illumina [19905671] (imputed)	N
1279	chr6	91006226	91006227	rs1504215	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	6q15	BACH2	rs1504215-G	0.66	2E-46				NR [> 9500000] (imputed)	N
1279	chr6	91006226	91006227	rs1504215	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (glucocorticoids)	17,352 European ancestry cases, 188,348 European ancestry controls	NA	6q15	BACH2	rs1504215-A	0.350757	1E-13		0.08696847	[0.064-0.11] unit decrease	Affymetrix [7288503] (imputed)	N
1279	chr6	91006226	91006227	rs1504215	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (adrenergics, inhalants)	28,880 European ancestry cases, 147,565 European ancestry controls	NA	6q15	BACH2	rs1504215-A	0.349167	1E-18		0.083247945	[0.065-0.102] unit decrease	Affymetrix [7288503] (imputed)	N
1279	chr6	91006226	91006227	rs1504215	30013184	Waage J	2018-07-16	Nat Genet	Genome-wide association and HLA fine-mapping studies identify risk loci and genetic pathways underlying allergic rhinitis.	Allergic rhinitis	59,762 European and unknown ancestry cases, 152,358 European and unknown ancestry controls	60,720 European ancestry cases, 618,527 European ancestry controls	6q15	BACH2, GJA10	rs1504215-G	0.6575	2E-18		1.0526316	[1.04-1.06]	Affymetrix, Illumina, Perlegen [16531985] (imputed)	N
1279	chr6	91008026	91008027	rs6925032	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	6q15	BACH2	rs6925032-A	0.34948	3E-29		0.0260619	[0.022-0.03] unit increase	Affymetrix [93095623] (imputed)	N
1279	chr6	91008026	91008027	rs6925032	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q15	NR	rs6925032-A	0.337028	7E-22				Affymetrix, Illumina [24332387] (imputed)	N
1279	chr6	91008026	91008027	rs6925032	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q15	NR	rs6925032-A	0.337024	3E-42				Affymetrix, Illumina [24246363] (imputed)	N
1279	chr6	91008026	91008027	rs6925032	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	6q15	NR	rs6925032-A	0.346828	2E-43		0.026225	[0.023-0.03] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
1279	chr6	91008026	91008027	rs6925032	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q15	NR	rs6925032-A	0.33816	7E-36				Affymetrix, Illumina [20825802] (imputed)	N
1279	chr6	91008026	91008027	rs6925032	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	6q15	NR	rs6925032-A	0.348076	4E-37		0.025582	[0.022-0.03] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
1279	chr6	91011672	91011673	rs1321859	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	6q15		rs1321859-T	NR	6E-16		0.0202	[0.015-0.025] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
1279	chr6	91011672	91011673	rs1321859	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (childhood onset)	9,433 British ancestry cases, 318,237 British ancestry controls	NA	6q15	BACH2, MAP3K7	rs1321859-C	0.649	9E-10		1.102	[1.068-1.136]	Affymetrix [10894596] (imputed)	N
1279	chr6	91011672	91011673	rs1321859	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (adult onset)	21,564 British ancestry cases, 318,237 British ancestry controls	NA	6q15	BACH2, MAP3K7	rs1321859-C	0.649	6E-12		1.076	[1.054-1.098]	Affymetrix [10894596] (imputed)	N
1279	chr6	91011672	91011673	rs1321859	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	6q15		rs1321859-?	NR	3E-15				NR [~ 8900000] (imputed)	N
1279	chr6	91012866	91012867	rs56353819	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6q15		rs56353819-T	0.349795	2E-41		0.03113206	[0.027-0.036] unit increase	Affymetrix [93095623] (imputed)	N
1279	chr6	91015038	91015039	rs12529935	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	6q15	NR	rs12529935-T	NR	9E-6		0.1255	[0.07-0.181] unit decrease	Illumina [11133794] (imputed)	N
1279	chr6	91015038	91015039	rs12529935	23273568	Yang W	2012-12-27	Am J Hum Genet	Meta-analysis followed by replication identifies loci in or near CDKN1B, TET3, CD80, DRAM1, and ARID5B as associated with systemic lupus erythematosus in Asians.	Systemic lupus erythematosus	1,656 Han Chinese ancestry cases, 3,394 Han Chinese ancestry controls	3,256 Han Chinese ancestry cases, 5,667 Han Chinese ancestry controls, 453 Thai ancestry cases, 963 Thai ancestry controls	6q15	BACH2	rs12529935-C	0.91	9E-6		1.3514		Illumina [2100739] (imputed)	N
1279	chr6	91030440	91030441	rs56258221	27992413	Ji SG	2016-12-19	Nat Genet	Genome-wide association study of primary sclerosing cholangitis identifies new risk loci and quantifies the genetic relationship with inflammatory bowel disease.	Primary sclerosing cholangitis	2,871 European ancestry cases, 12,019 European ancestry controls	1,925 European ancestry cases, 7,936 European ancestry controls	6q15	BACH2	rs56258221-C	0.18	1E-9		1.21	[1.14-1.29]	Affymetrix, Illumina [7891602] (imputed)	N
1279	chr6	91030440	91030441	rs56258221	23603763	Liu JZ	2013-06-01	Nat Genet	Dense genotyping of immune-related disease regions identifies nine new risk loci for primary sclerosing cholangitis.	Primary sclerosing cholangitis	3,789 European ancestry cases, 25,079 European ancestry controls	NA	6q15	BACH2	rs56258221-G	0.183	8E-12		1.23	[1.16-1.31]	Illumina [140322] (imputed)	N
1280	chr6	91112660	91112661	rs4706368	28927378	Qian DC	2017-09-19	BMC Genomics	Genome-wide imaging association study implicates functional activity and glial homeostasis of the caudate in smoking addiction.	Caudate activity during reward	106 individuals	NA	6q15	NR	rs4706368-C	0.43217	8E-6		0.65017843	[0.38-0.92] unit increase	Illumina [at least 621854] (imputed)	N
1280	chr6	91187509	91187510	rs1145724	30738427	Penney ME	2019-02-09	BMC Cancer	A genome-wide association study identifies single nucleotide polymorphisms associated with time-to-metastasis in colorectal cancer.	Metastasis in stage I-III microsatellite instability low/stable colorectal cancer (time to event)	379 European ancestry cases	NA	6q15	NR	rs1145724-G	NR	2E-8	(Cox proportional hazards regression model)	30.76	[9.27-102.03]	Illumina [810622]	N
1280	chr6	91207350	91207351	rs806276	18937294	Lasky-Su J	2008-12-05	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association scan of the time to onset of attention deficit hyperactivity disorder.	Attention deficit hyperactivity disorder (time to onset)	930 European ancestry trios	NA	6q15	intergenic	rs806276-A	NR	3E-7	(later onset)			Perlegen [429981]	N
1280	chr6	91208375	91208376	rs284509	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,931 Sub-Saharan African ancestry males	NA	6q15		rs284509-T	0.234037	5E-8		0.0174122	[0.011-0.024] unit increase	Illumina [13900000] (imputed)	N
1280	chr6	91208541	91208542	rs284511	26776603	Honne K	2016-01-18	Arthritis Res Ther	A longitudinal genome-wide association study of anti-tumor necrosis factor response among Japanese patients with rheumatoid arthritis.	Response to anti-TNF therapy in rheumatoid arthritis	31 Japanese ancestry mild cases, 282 Japanese ancestry moderate cases, 131 Japanese ancestry severe cases	NA	6q15	MAP3K7, BACH2	rs284511-C	0.33	3E-8	(response at 6 months)	0.41	[NR] unit increase	Illumina [4253138] (imputed)	N
1280	chr6	91208624	91208625	rs284512	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	6q15	NR	rs284512-?	NR	7E-7				Affymetrix [NR]	N
1280	chr6	91208827	91208828	rs284515	26776603	Honne K	2016-01-18	Arthritis Res Ther	A longitudinal genome-wide association study of anti-tumor necrosis factor response among Japanese patients with rheumatoid arthritis.	Response to anti-TNF therapy in rheumatoid arthritis	31 Japanese ancestry mild cases, 282 Japanese ancestry moderate cases, 131 Japanese ancestry severe cases	NA	6q15	MAP3K7, BACH2	rs284515-G	0.17	7E-7	(GEE model, response at both 3 and 6 months)	0.35	[0.21-0.49] unit increase	Illumina [4253138] (imputed)	N
1280	chr6	91224510	91224511	rs141807443	34838041	Naderi E	2021-11-27	J Transl Med	A two-stage genome-wide association study of radiation-induced acute toxicity in head and neck cancer.	radiation-induced toxicity (physician-rated acute dysphagia)	860 Dutch ancestry individuals	246 Dutch ancestry individuals	6q15		rs141807443-G	NR	1E-7		0.43674707	[0.27-0.6] decrease	Illumina [6334277] (imputed)	N
1282	chr6	91401835	91401836	rs12661598	33483693	Clements CC	2021-01-22	Mol Psychiatry	Genome-wide association study of patients with a severe major depressive episode treated with electroconvulsive therapy.	Major depressive disorder and major depressive episode treated with electroconvulsive therapy	1,796 European ancestry cases, 3,290 European ancestry controls	NA	6q15	NR	rs12661598-?	NR	2E-6		0.5981	[0.39-0.81]	Illumina [NR] (imputed)	N
1282	chr6	91417751	91417752	rs713155	20171287	Stein JL	2010-02-17	Neuroimage	Voxelwise genome-wide association study (vGWAS).	Brain structure	740 European ancestry individuals	NA	6q15	intergenic	rs713155-?	0.40	5E-7				Illumina [448293]	N
1282	chr6	91435771	91435772	rs1231498	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	6q15	NR	rs1231498-?	NR	2E-7				Affymetrix [NR]	N
1283	chr6	91589304	91589305	rs189581450	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	6q15	NR	rs189581450-?	NR	1E-6		1.18647	[0.71-1.66] unit increase	NR [13958389] (imputed)	N
1284	chr6	91671158	91671159	rs16883826	30172743	Liang X	2018-08-30	Bone	Assessing the genetic correlations between early growth parameters and bone mineral density: A polygenic risk score analysis.	Bone mineral density (hip)	2,286 European ancestry individuals	NA	6q15	MAP3K7	rs16883826-?	NR	4E-6				Affymetrix [753382]	N
1284	chr6	91673412	91673413	rs13198361	31164008	Mullins N	2019-06-05	Am J Psychiatry	GWAS of Suicide Attempt in Psychiatric Disorders and Association With Major Depression Polygenic Risk Scores.	Suicide attempts in schizophrenia	1,683 European ancestry attempters, 2,946 European ancestry nonattempters	NA	6q15	NR	rs13198361-C	0.86	9E-6		1.5384616	[1.27-1.85]	NR [8814543] (imputed)	N
1285	chr6	91812274	91812275	rs145179450	33048379	Richard MA	2020-10-13	Cancer	Genetic variation in the body mass index of adult survivors of childhood acute lymphoblastic leukemia: A report from the Childhood Cancer Survivor Study and the St. Jude Lifetime Cohort.	BMI in adult survivors of childhood acute lymphoblastic leukemia	1,458 European ancestry individuals	787 individuals	6q15	NR	rs145179450-C	NR	6E-7		5.9	[3.55-8.25] unit increase	Illumina [> 9000000] (imputed)	N
1285	chr6	91840402	91840403	rs57030374	31260374	Pedergnana V	2019-07-01	J Interferon Cytokine Res	Impact of IFNL4 Genetic Variants on Sustained Virologic Response and Viremia in Hepatitis C Virus Genotype 3 Patients.	Response to direct-acting antiviral treatment in hepatitis C virus genotype 3	325 European, Asian and unknown ancestry responders, 84 European, Asian and unknown ancestry non-responders	NA	6q15	NR	rs57030374-?	NR	2E-6		3.72	NR	Affymetrix [~ 18000000] (imputed)	N
1285	chr6	91845406	91845407	rs4424056	24529757	Xie T	2014-01-17	Neurobiol Aging	Genome-wide association study combining pathway analysis for typical sporadic amyotrophic lateral sclerosis in Chinese Han populations.	Amyotrophic lateral sclerosis (sporadic)	250 Han Chinese ancestry cases, 250 Han Chinese ancestry controls	NA	6q15	MAP3K7	rs4424056-?		5E-7				Illumina [859311]	N
1286	chr6	91918765	91918766	rs12180309	29071344	Zhou H	2017-10-25	JAMA Psychiatry	Genetic Risk Variants Associated With Comorbid Alcohol Dependence and Major Depression.	Major depression and alcohol dependence	3,041 African American individuals, 1,618 European ancestry individuals	1,612 African American individuals, 1,551 European ancestry individuals	6q15	intergenic	rs12180309-C	NR	5E-7	(AA)	0.947	unit increase	Illumina [at least 5086170] (imputed)	N
1286	chr6	91942760	91942761	rs12660096	32963231	Hofer E	2020-09-22	Nat Commun	Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.	Cortical volume	22,824 European and African American ancestry individuals	NA	6q15	MAP3K7	rs12660096-?		5E-10	(Pars triangularis)			Affymetrix, Illumina [NR] (imputed)	N
1286	chr6	91942760	91942761	rs12660096	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	6q15	Intergenic	rs12660096-A	0.0995	4E-9	(MTAG)	0.0176	[0.012-0.023] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1286	chr6	91942760	91942761	rs12660096	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	6q15	Intergenic	rs12660096-A	0.0991	2E-10	(MTAG)	0.0176	[0.012-0.023] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1286	chr6	91956662	91956663	rs2811670	24792382	Park TJ	2014-04-30	Clin Chim Acta	Genome-wide association study identifies ALLC polymorphisms correlated with FEV? change by corticosteroid.	Response to inhaled corticosteroid treatment in asthma (change in FEV1)	189 Korean ancestry cases	NA	6q15	MAP3K7	rs2811670-?		7E-6		0.053	[NR] unit increase	Illumina [430487]	N
1286	chr6	91968407	91968408	rs4706386	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	6q15	NR	rs4706386-?	NR	2E-8	(left supramarginal)			NR [9227495] (imputed)	N
1286	chr6	92002568	92002569	rs9345124	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	8,072 individuals	NA	6q15		rs9345124-C	0.17	1E-11				NR [13131314] (imputed)	N
1286	chr6	92002568	92002569	rs9345124	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	5,199 individuals	NA	6q15		rs9345124-C	0.17	2E-12				Affymetrix [9061022] (imputed)	N
1286	chr6	92002568	92002569	rs9345124	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	6q15		rs9345124-C	0.17	3E-75		18.36	z score increase	Affymetrix [9061022] (imputed)	N
1286	chr6	92002568	92002569	rs9345124	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	6q15	NR	rs9345124-C	0.169	1E-17				NR [9056863] (imputed)	N
1286	chr6	92002568	92002569	rs9345124	32963231	Hofer E	2020-09-22	Nat Commun	Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.	Cortical surface area	18,617 European and African American ancestry individuals	22,363 European ancestry individuals	6q15	MAP3K7	rs9345124-?		1E-23	(Precentral)			Affymetrix, Illumina [NR] (imputed)	N
1286	chr6	92002568	92002569	rs9345124	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	6q15	NOSTRIN, SPC25	rs9345124-?		1E-26				NR [7428630] (imputed)	N
1286	chr6	92002652	92002653	rs9345125	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	8,072 individuals	NA	6q15		rs9345125-G	0.17	1E-10				NR [13131314] (imputed)	N
1286	chr6	92002652	92002653	rs9345125	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	5,199 individuals	NA	6q15		rs9345125-G	0.17	4E-10				Affymetrix [9061022] (imputed)	N
1286	chr6	92002652	92002653	rs9345125	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	6q15		rs9345125-G	0.17	1E-94		20.64	z score increase	Affymetrix [9061022] (imputed)	N
1286	chr6	92002652	92002653	rs9345125	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	6q15		rs9345125-?	NR	2E-25				NR [9705931] (imputed)	N
1286	chr6	92002652	92002653	rs9345125	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	6q15	NR	rs9345125-?		8E-24				NR [7428630] (imputed)	N
1286	chr6	92002652	92002653	rs9345125	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	6q15	NR	rs9345125-A	0.8092	2E-11	(Caudal Middle Frontal)	13.849994	[9.8-17.9] unit increase	Affymetrix, Illumina [NR]	N
1286	chr6	92002652	92002653	rs9345125	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	6q15	NR	rs9345125-?	NR	2E-10	(right precentral)			NR [9227495] (imputed)	N
1286	chr6	92002912	92002913	rs9351259	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	6q15	NR	rs9351259-?	NR	3E-10	(left postcentral)			NR [9227495] (imputed)	N
1286	chr6	92004302	92004303	rs6923112	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	6q15	NR	rs6923112-C	0.1689	1E-17				NR [9056863] (imputed)	N
1286	chr6	92008579	92008580	rs9353816	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (min-P)	26,502 European ancestry individuals	NA	6q15	PEAR1, LRRC71, ARHGEF11, ETV3L	rs9353816-?		5E-8				NR [7428630] (imputed)	N
1286	chr6	92009563	92009564	rs4706391	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	6q15		rs4706391-A	0.17	3E-40		13.27	z score increase	Affymetrix [9061022] (imputed)	N
1286	chr6	92009563	92009564	rs4706391	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	6q15	NR	rs4706391-A	0.1941	2E-14	(Transverse Temporal)	2.737795	[2.04-3.44] unit decrease	Affymetrix, Illumina [NR]	N
1286	chr6	92009595	92009596	rs4706392	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	6q15	NR	rs4706392-A	0.8051	2E-18	(Precentral)	27.338331	[21.21-33.46] unit increase	Affymetrix, Illumina [NR]	N
1286	chr6	92010244	92010245	rs2144366	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	6q15	NR	rs2144366-C	0.8531	3E-6	(Superior Parietal)	19.025154	[11.1-26.95] unit decrease	Affymetrix, Illumina [NR]	N
1286	chr6	92010244	92010245	rs2144366	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	6q15	NR	rs2144366-?	NR	2E-11	(left postcentral)			NR [9227495] (imputed)	N
1287	chr6	92016258	92016259	rs76966106	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	6q15		rs76966106-T	NR	3E-8		0.0149	[0.0096-0.0202] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1287	chr6	92049629	92049630	rs9451649	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6q15	ENSG00000224605	rs9451649-T	NR	5E-8		5.457	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1287	chr6	92066647	92066648	rs35854754	32279069	Rovira P	2020-04-12	Neuropsychopharmacology	Shared genetic background between children and adults with attention deficit/hyperactivity disorder.	Attention deficit hyperactivity disorder (persistent)	6,532 European ancestry cases, 15,874 European ancestry controls	NA	6q15	NR	rs35854754-CT	0.94	3E-6		1.27	[1.15-1.40]	Illumina [~ 1113287] (imputed)	N
1287	chr6	92133240	92133241	rs9359939	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	6q15	Intergenic	rs9359939-A	0.2401	3E-11	(MTAG)	0.0128	[0.0091-0.0165] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1287	chr6	92133240	92133241	rs9359939	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6q15		rs9359939-A	0.2431	2E-10		0.0105	[0.0074-0.0136] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1287	chr6	92133240	92133241	rs9359939	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6q15	Intergenic	rs9359939-A	0.2431	1E-12	(MTAG)	0.0108	[0.0079-0.0137] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1287	chr6	92133240	92133241	rs9359939	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	6q15	Intergenic	rs9359939-A	0.2423	3E-9	(MTAG)	0.0159	[0.011-0.021] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1288	chr6	92147357	92147358	rs9353834	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6q15		rs9353834-C	0.7555	1E-10	(conditional-joint)	0.0105	[0.0074-0.0136] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1288	chr6	92168980	92168981	rs79776098	31560688	Geidenstam N	2019-09-27	PLoS One	Using metabolite profiling to construct and validate a metabolite risk score for predicting future weight gain.	Tyrosine levels	1,937 individuals	NA	6q15	intergenic	rs79776098-G	0.002	4E-7		1.7196	[1.06-2.38] unit increase	Affymetrix, Illumina [up to 22000000] (imputed)	N
1288	chr6	92180915	92180916	rs77801015	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	6q15	NR	rs77801015-A	NR	1E-6	(LME model)	0.82996	[0.5-1.16] unit decrease	NR [NR] (imputed)	N
1288	chr6	92184361	92184362	rs73753762	28300201	Hernandez-Pacheco N	2017-03-16	Sci Rep	Identification of a novel locus associated with skin colour in African-admixed populations.	Skin pigmentation	285 Puerto Rican individuals	373 African American individuals	6q15	NR	rs73753762-G	NR	3E-6	(Hispanic)	10.3	[6.08-14.52] unit increase	Affymetrix [14000000] (imputed)	N
1288	chr6	92190075	92190076	rs73753796	34311721	Alotaibi RN	2021-07-26	BMC Oral Health	Genome-Wide Association Study (GWAS) of dental caries in diverse populations.	Permanent dental caries (decayed and filled teeth)	2,570 adults	NA	6q15		rs73753796-?	NR	1E-6		2.91	unit decrease	Illumina [8859951] (imputed)	N
1288	chr6	92196397	92196398	rs4518467	26562150	Seldin MF	2015-10-10	Mol Med	Genome-wide Association Study of Late-Onset Myasthenia Gravis: Confirmation of TNFRSF11A, and Identification of ZBTB10 and Three Distinct HLA Associations.	Late-onset myasthenia gravis	532 European ancestry cases, 2,128 European ancestry controls	NA	6q15	MIR4643	rs4518467-A	0.07	4E-6		1.77	[1.40-2.23]	Illumina [6175472] (imputed)	N
1288	chr6	92201718	92201719	rs4421172	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	6q15	NR	rs4421172-T	0.627	4E-9		0.00803814	[0.0054-0.0107] unit decrease	NR [~ 9732723] (imputed)	N
1288	chr6	92202766	92202767	rs7738395	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	6q15		rs7738395-G	0.375	1E-10		0.008	[0.006-0.01] unit increase	NR [NR] (imputed)	N
1288	chr6	92202766	92202767	rs7738395	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	6q15	NR	rs7738395-A	0.627	4E-11		0.00737413	[0.0052-0.0096] unit decrease	NR [9732723] (imputed)	N
1288	chr6	92209362	92209363	rs9362880	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6q15	NR	rs9362880-?	NR	1E-6		4.898	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1288	chr6	92226608	92226609	rs17554906	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	6q15	NR	rs17554906-C	0.444	3E-8		0.014184873	[0.0092-0.0192] unit increase	NR [~ 10000000] (imputed)	N
1289	chr6	92294370	92294371	rs4707680	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 51)	19,670 European ancestry individuals	NA	6q15		rs4707680-?	NR	1E-8				NR [9705931] (imputed)	N
1289	chr6	92294370	92294371	rs4707680	29563502	Fejzo MS	2018-03-21	Nat Commun	Placenta and appetite genes GDF15 and IGFBP7 are associated with hyperemesis gravidarum.	Severity of nausea and vomiting of pregnancy	14,988 European ancestry individuals with no NVP, 14,292 European ancestry individuals with slight NVP, 17,786 European individuals with moderate NVP, 5,445 European ancestry individuals with severe NVP, 1,220 European ancestry individuals with very severe NVP	NA	6q15	MAP3K7	rs4707680-C	0.427	3E-10		0.043	[0.03-0.056] unit increase	Illumina [11956931] (imputed)	N
1289	chr6	92302757	92302757	rs775828150	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fish- and plant-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	6q15	intergenic	rs775828150-?	NR	7E-10	(female)	0.020605	[0.014-0.027] unit increase	Affymetrix [25921788] (imputed)	N
1289	chr6	92327445	92327446	rs9362897	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fish- and plant-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	6q15	intergenic	rs9362897-?	NR	2E-10		0.0153747	[0.011-0.02] unit decrease	Affymetrix [25921788] (imputed)	N
1289	chr6	92340663	92340664	rs387722	34563919	Chiba Y	2021-09-20	J Neurol Sci	Genetic and demographic predisposing factors associated with pediatric sleepwalking in the Philadelphia Neurodevelopmental Cohort.	Sleepwalking	512 European ancestry cases, 4,250 European ancestry controls	NA	6q15		rs387722-?	NR	4E-7		0.6795		Illumina [NR] (imputed)	N
1289	chr6	92340801	92340802	rs1201867	34563919	Chiba Y	2021-09-20	J Neurol Sci	Genetic and demographic predisposing factors associated with pediatric sleepwalking in the Philadelphia Neurodevelopmental Cohort.	Sleepwalking	155 African American cases, 2,598 African American controls, 512 European ancestry cases, 4,250 European ancestry controls	NA	6q15		rs1201867-T	NR	3E-6		0.7222		Illumina [NR] (imputed)	N
1290	chr6	92449968	92449969	rs191127136	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Subjective well-being	298,420 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	6q15	NR	rs191127136-C	0.9976	6E-6		0.1815866	[0.1-0.26] unit increase	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
1290	chr6	92477856	92477857	rs567846134	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	6q15	NR	rs567846134-?	NR	4E-6		0.985081	[0.56-1.41] unit increase	NR [13958389] (imputed)	N
1291	chr6	92577370	92577371	rs6908580	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	6q15	Intergenic	rs6908580-T	NR	3E-7	(between families)	5.099	unit decrease	Affymetrix [up to 15107142] (imputed)	N
1292	chr6	92677129	92677130	rs138831395	32080354	Rasmussen ER	2020-02-21	Pharmacogenomics J	Genome-wide association study of angioedema induced by angiotensin-converting enzyme inhibitor and angiotensin receptor blocker treatment.	Angioedema in response to angiotensin-converting enzyme inhibitor and/or angiotensin receptor blocker	172 European ancestry cases, 1 case, 4,890 European ancestry controls	NA	6q15	NR	rs138831395-A	0.014	5E-6		3.576	[2.07-6.178]	Illumina [7585599] (imputed)	N
1292	chr6	92712551	92712552	rs12664176	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Pursuit maintenance gain	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	6q15	CASC6	rs12664176-C	0.07971	4E-6				Illumina [4404269] (imputed)	N
1293	chr6	92822577	92822578	rs2934227	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	6q15		rs2934227-C	0.24	1E-10		6.42	z score increase	Affymetrix [9061022] (imputed)	N
1293	chr6	92822577	92822578	rs2934227	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 3)	19,670 European ancestry individuals	NA	6q15		rs2934227-?	NR	2E-12				NR [9705931] (imputed)	N
1293	chr6	92832791	92832792	rs4706408	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	6q15		rs4706408-T	0.24	1E-38		13.02	z score increase	Affymetrix [9061022] (imputed)	N
1293	chr6	92832791	92832792	rs4706408	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	6q15		rs4706408-T	0.24	1E-14		7.74	z score increase	Affymetrix [9061022] (imputed)	N
1293	chr6	92832791	92832792	rs4706408	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	6q15	NR	rs4706408-T	0.2422	4E-11				NR [9056863] (imputed)	N
1293	chr6	92832791	92832792	rs4706408	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	6q15	NR	rs4706408-T	0.2422	1E-15				NR [9056863] (imputed)	N
1293	chr6	92870188	92870189	rs9451947	29246731	de Toro-Martin J	2017-11-02	J Clin Lipidol	A common variant in ARHGEF10 alters delta-6 desaturase activity and influence susceptibility to hypertriglyceridemia.	Delta-5 desaturase activity response to n3-polyunsaturated fat supplement	81 extreme responder individuals, 60 non-responder individuals	NA	6q15	intergenic	rs9451947-G	0.04	2E-8		1.755	[1.19-2.32] unit increase	Illumina [2668805]	N
1293	chr6	92881402	92881403	rs80124926	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental extreme longevity (95 years and older)	1,339 middle-aged British cases, 40,934 middle-aged British controls	NA	6q15	NR	rs80124926-?	NR	2E-6		0.004533	[0.0027-0.0064] unit increase	Affymetrix [9658292] (imputed)	N
1293	chr6	92926527	92926528	rs9444967	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	6q15	NR	rs9444967-G	0.267	2E-8		0.00681742	[0.0044-0.0092] unit increase	NR [9732723] (imputed)	N
1294	chr6	93034457	93034458	rs2818130	33706416	Slob EMA	2021-03-11	Pediatr Allergy Immunol	Genome-wide association studies of exacerbations in children using long-acting beta2-agonists.	Childhood asthma exacerbations in long-acting beta2-agonist treatment	642 European, Hispanic, African, Asian or unknown ancestry cases, 783 European, Hispanic, African, Asian or unknown ancestry controls	NA	6q15	EPHA7	rs2818130-A	0.167	3E-6		2.62	[1.75-3.91]	Affymetrix, Illumina [82996] (imputed)	N
1295	chr6	93148340	93148341	rs12190758	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	67,764 individuals	NA	6q15	NR	rs12190758-?		4E-8				NR [8377093]	N
1295	chr6	93148340	93148341	rs12190758	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	65,967 individuals	NA	6q15	NR	rs12190758-?		4E-8				NR [8377093]	N
1295	chr6	93148340	93148341	rs12190758	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	6q15	CASC6	rs12190758-G	NR	7E-7	(EA)	1.0638298	[1.04-1.09]	Illumina [6627481] (imputed)	N
1295	chr6	93148340	93148341	rs12190758	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	6q15	intergenic	rs12190758-G	NR	4E-7		1.0649627	[1.04-1.09]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1295	chr6	93148340	93148341	rs12190758	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	6q15	NR	rs12190758-G	NR	3E-7		1.0638298	[NR]	Illumina [7158791] (imputed)	N
1295	chr6	93157566	93157567	rs9362971	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Sleep duration	384,317 European ancestry individuals	NA	6q15		rs9362971-C	0.3461	1E-8		0.01456	[0.0095-0.0196] unit decrease	Affymetrix, Illumina [10862567] (imputed)	N
1295	chr6	93162638	93162639	rs9345234	30846698	Dashti HS	2019-03-07	Nat Commun	Genome-wide association study identifies genetic loci for self-reported habitual sleep duration supported by accelerometer-derived estimates.	Sleep duration	446,118 European ancestry individuals	47,180  adults, 10,554 children or adolescents	6q15	NR	rs9345234-C	NR	2E-8		0.714	unit increase	Affymetrix [14661600] (imputed)	N
1295	chr6	93186611	93186612	rs190722109	31792241	Gouveia MH	2019-12-02	Sci Rep	Genetics of cognitive trajectory in Brazilians: 15 years of follow-up from the Bambui-Epigen Cohort Study of Aging.	Cognitive decline (age-related)	1,407 Brazilian ancestry individuals	NA	6q15		rs190722109-?	NR	1E-7		0.06822	unit decrease	Illumina [at least 2500000] (imputed)	N
1295	chr6	93186659	93186660	rs145261073	31792241	Gouveia MH	2019-12-02	Sci Rep	Genetics of cognitive trajectory in Brazilians: 15 years of follow-up from the Bambui-Epigen Cohort Study of Aging.	Cognitive decline (age-related)	1,407 Brazilian ancestry individuals	NA	6q15		rs145261073-?	NR	9E-7		0.06069	unit decrease	Illumina [at least 2500000] (imputed)	N
1296	chr6	93197299	93197300	rs13207034	23319000	Luykx JJ	2013-01-15	Mol Psychiatry	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA-5-HIAA Factor score)	up to 398 European ancestry individuals	NA	6q15	intergenic	rs13207034-A		1E-6		0.2425	unit decrease	Illumina [5767231] (imputed)	N
1296	chr6	93197299	93197300	rs13207034	23319000	Luykx JJ	2013-01-15	Mol Psychiatry	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA)	up to 398 European ancestry individuals	NA	6q15	intergenic	rs13207034-A	NR	4E-6		0.2275	unit decrease	Illumina [5767231] (imputed)	N
1296	chr6	93232788	93232789	rs73516187	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6q16.1	NR	rs73516187-T	0.01394	8E-11	(HSD17B4)	1.583	NR unit increase	Illumina [1671387] (imputed)	N
1296	chr6	93232788	93232789	rs73516187	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6q16.1	NR	rs73516187-T	0.01394	7E-10	(EHHADH)	1.728	NR unit increase	Illumina [1671387] (imputed)	N
1297	chr6	93349870	93349871	rs72926690	32438682	Mateos MK	2020-05-19	Cancers (Basel)	Genome-Wide Association Meta-Analysis of Single-Nucleotide Polymorphisms and Symptomatic Venous Thromboembolism during Therapy for Acute Lymphoblastic Leukemia and Lymphoma in Caucasian Children.	Childhood ALL/LBL (acute lymphoblastic leukemia/lymphoblastic lymphoma) treatment-related venous thromboembolism	92 European ancestry cases, 1,481 European ancestry controls	NA	6q16.1	NR	rs72926690-?		3E-6		4.46	[2.38-8.38]	Illumina [NR] (imputed)	N
1297	chr6	93369654	93369655	rs6918777	22959728	Ahmeti KB	2012-09-05	Neurobiol Aging	Age of onset of amyotrophic lateral sclerosis is modulated by a locus on 1p34.1.	Amyotrophic lateral sclerosis	4,243 European ancestry cases, 5,112 European ancestry controls	NA	6q16.1	intergenic	rs6918777-?	0.45	7E-6	(Meta)	1.1494	[1.08-1.22]	Illumina [254145]	N
1297	chr6	93402546	93402547	rs9345268	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	6q16.1	EPHA7	rs9345268-T	0.3194	4E-8		0.011444262	[0.0074-0.0155] unit increase	Illumina [9339358] (imputed)	N
1298	chr6	93487375	93487376	rs2674382	31263063	Dufek S	2019-07-01	J Am Soc Nephrol	Genetic Identification of Two Novel Loci Associated with Steroid-Sensitive Nephrotic Syndrome.	Childhood steroid-sensitive nephrotic syndrome	422 European ancestry cases, 5,642 European ancestry controls	NA	6q16.1	NR	rs2674382-?	0.93	9E-6		2.173913	[1.47-3.12]	Illumina [5216266] (imputed)	N
1298	chr6	93522133	93522134	rs9445023	25194280	Wei Q	2014-09-07	Nat Genet	Genome-wide association study identifies three susceptibility loci for laryngeal squamous cell carcinoma in the Chinese population.	Laryngeal squamous cell carcinoma	993 Chinese ancestry cases, 1,995 Chinese ancestry controls	2,398 Chinese ancestry cases, 2,804 Chinese ancestry controls	6q16.1	EPHA7	rs9445023-?	0.88	7E-7		1.32	[1.18-1.47]	Affymetrix [662108]	N
1298	chr6	93529935	93529936	rs1515799	33768542	Liu Y	2021-03-26	Clin Pharmacol Ther	Class II HLA Variants Associate with Risk of Pegaspargase Hypersensitivity.	Asparaginase hypersensitivity in acute lymphoblastic leukemia	310 African ancestry individuals	NA	6q16.1	NR	rs1515799-A	NR	6E-6		4.44	[NR]	Illumina [NR] (imputed)	N
1298	chr6	93568526	93568527	rs17686649	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6q16.1		rs17686649-T	0.2192	6E-9		0.0098	[0.0065-0.0131] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1299	chr6	93606143	93606144	rs2506929	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	6q16.1		rs2506929-G	0.254	5E-8		0.007	[0.005-0.009] unit increase	NR [NR] (imputed)	N
1299	chr6	93615449	93615450	rs2506933	20125193	Cirulli ET	2010-02-03	Eur J Hum Genet	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American individuals, up to 74 South Asian ancestry individuals	NA	6q16.1	RP11-538A16.1	rs2506933-?	NR	6E-6	(Animals)			Illumina [up to 563855]	N
1299	chr6	93629041	93629042	rs2506942	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6q16.1	NR	rs2506942-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
1299	chr6	93629041	93629042	rs2506942	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	6q16.1		rs2506942-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1299	chr6	93640547	93640548	rs1338263	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6q16.1	Intergenic	rs1338263-A	0.552	3E-9	(MTAG)	0.0078	[0.0053-0.0103] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1299	chr6	93643268	93643269	rs9452161	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	6q16.1	Intergenic	rs9452161-A	0.3265	2E-9	(MTAG)	0.0106	[0.0071-0.0141] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1299	chr6	93681056	93681057	rs688198	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	6q16.1	Intergenic	rs688198-T	0.1608	1E-9	(MTAG)	0.0148	[0.01-0.02] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1299	chr6	93693129	93693130	rs112589852	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	6q16.1	Intergenic	rs112589852-T	0.8686	1E-8		0.0165	[0.011-0.022] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1299	chr6	93713804	93713805	rs652520	23144326	Kim DK	2012-11-09	Am J Respir Crit Care Med	Genome-wide association analysis of blood biomarkers in chronic obstructive pulmonary disease.	Chronic obstructive pulmonary disease-related biomarkers	Up to 1,951 European ancestry smokers	NA	6q16.1	RP1-23E21.2	rs652520-C	0.48	2E-6	(CRP)			Illumina [588352]	N
1300	chr6	93817041	93817042	rs146471836	33841421	Li J	2021-03-25	Front Immunol	Variants at the MHC Region Associate With Susceptibility to <i>Clostridioides difficile</i> Infection: A Genome-Wide Association Study Using Comprehensive Electronic Health Records.	Clostridioides difficle infection in antibiotics-users	587 European ancestry cases, 3,166 European ancestry controls	NA	6q16.1	RP1NR23E21.2	rs146471836-T	0.026	4E-6		2.11	[1.59-2.72]	Illumina [64973696] (imputed)	N
1300	chr6	93832227	93832227	rs533119559	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q16.1	EPHA7	rs533119559-A	0.705539	9E-10	(-20 ms)	0.0349401	[0.023-0.047] unit increase	Affymetrix [10000000] (imputed)	N
1300	chr6	93832227	93832227	rs533119559	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q16.1	EPHA7	rs533119559-A	0.705539	5E-10	(-16 ms)	0.0368682	[0.025-0.049] unit increase	Affymetrix [10000000] (imputed)	N
1300	chr6	93832227	93832227	rs533119559	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q16.1	EPHA7	rs533119559-A	0.705539	2E-8	(-14 ms)	0.0337541	[0.022-0.046] unit increase	Affymetrix [10000000] (imputed)	N
1300	chr6	93832227	93832227	rs533119559	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q16.1	EPHA7	rs533119559-A	0.705539	1E-10	(-18 ms)	0.0377325	[0.026-0.05] unit increase	Affymetrix [10000000] (imputed)	N
1300	chr6	93833435	93833436	rs6938042	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking initiation (ever regular vs never regular)	up to 433,216 European ancestry individuals	NA	6q16.1	EPHA7	rs6938042-G	0.339	2E-9		0.0144	[0.0097-0.0191] unit increase	Illumina [~ 250000] (imputed)	N
1300	chr6	93840704	93840705	rs633279	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6q16.1		rs633279-A	0.2957	8E-9		0.0089	[0.006-0.0118] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1300	chr6	93842445	93842446	rs12662631	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	6q16.1	EPHA7	rs12662631-T	0.3185	1E-8		0.012332154	[0.0081-0.0166] unit increase	Affymetrix [11514654] (imputed)	N
1300	chr6	93845491	93845492	rs2181804	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	6q16.1	Intergenic	rs2181804-A	0.3688	4E-12	(MTAG)	0.0128	[0.0091-0.0165] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1300	chr6	93845491	93845492	rs2181804	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	6q16.1	Intergenic	rs2181804-C	0.6312	3E-10		0.0127	[0.0088-0.0166] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1300	chr6	93845491	93845492	rs2181804	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	6q16.1	Intergenic	rs2181804-A	0.3689	7E-13	(MTAG)	0.0123	[0.009-0.0156] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1301	chr6	93847883	93847884	rs594442	21546767	Murea M	2011-05-05	Am J Nephrol	Genome-wide association scan for survival on dialysis in African-Americans with type 2 diabetes.	Dialysis-related mortality	610 African American type 2 diabetes cases	NA	6q16.1	EPHA7	rs594442-?	0.05	1E-6		1.99	[1.50-2.64]	Affymetrix [832357]	N
1301	chr6	93851461	93851462	rs12215808	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6q16.1		rs12215808-T	0.7287	7E-10	(conditional-joint)	0.0097	[0.0066-0.0128] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1301	chr6	93852251	93852252	rs1408282	21647738	Wu Y	2011-06-07	Inflammation	Genome-wide association with C-reactive protein levels in CLHNS: evidence for the CRP and HNF1A loci and their interaction with exposure to a pathogenic environment.	C-reactive protein	1,709 Filipino ancestry female individuals	NA	6q16.1	NR	rs1408282-A	0.10	1E-6		0.412	[0.24-0.58] unit increase	Affymetrix [2073674] (imputed)	N
1301	chr6	93869813	93869814	rs9353994	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Medial orbital frontal cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	6q16.1	NR	rs9353994-?		6E-6				Illumina [4322238] (imputed)	N
1301	chr6	93893585	93893586	rs1408284	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6q16.1		rs1408284-C	0.8639	6E-10		0.0127	[0.0088-0.0166] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1301	chr6	93893585	93893586	rs1408284	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6q16.1	Intergenic	rs1408284-C	0.8639	8E-11	(MTAG)	0.0124	[0.0087-0.0161] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1301	chr6	93911118	93911119	rs12527818	22095909	Lange CM	2011-11-16	Hepatology	Serum ferritin levels are associated with a distinct phenotype of chronic hepatitis C poorly responding to pegylated interferon-alpha and ribavirin therapy.	Response to hepatitis C treatment	707 European ancestry cases	NA	6q16.1	EPHA7	rs12527818-T	NR	7E-6		0.274	[0.15-0.39] ug/L increase	NR [NR]	N
1301	chr6	93913199	93913200	rs1324110	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		6q16.1	EPHA7	rs1324110-G	0.557284	2E-8		0.00776998	[0.0051-0.0105] unit increase	Affymetrix [12370749]	N
1301	chr6	93918965	93918966	rs535133332	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	6q16.1	EPHA7	rs535133332-A	0.9984	4E-7		1.2045	[0.74-1.67] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1301	chr6	93947346	93947347	rs17446388	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Initial pursuit acceleration	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	6q16.1	EPHA7	rs17446388-G	0.09416	8E-6	(African)			Illumina [4404269] (imputed)	N
1301	chr6	93964318	93964319	rs345736	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	6q16.1	Intergenic	rs345736-T	0.7225	2E-14	(MTAG)	0.0153	[0.011-0.019] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1301	chr6	93964318	93964319	rs345736	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	6q16.1	Intergenic	rs345736-C	0.2775	1E-13		0.0161	[0.012-0.02] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1301	chr6	93968161	93968162	rs168290	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	6q16.1	Intergenic	rs168290-T	0.7221	6E-11	(MTAG)	0.0121	[0.0086-0.0156] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1301	chr6	93968161	93968162	rs168290	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	6q16.1	Intergenic	rs168290-T	0.7225	2E-8	(MTAG)	0.0143	[0.0092-0.0194] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1302	chr6	94008534	94008535	rs9363058	24483146	Li L	2014-02-01	BMC Genomics	Discovery of genetic biomarkers contributing to variation in drug response of cytidine analogues using human lymphoblastoid cell lines.	Response to cytadine analogues (cytosine arabinoside)	60 European ancestry lymphoblastoid cell lines, 54 African American lymphoblastoid cell lines, 60 Han Chinese ancestry lymphoblastoid cell lines	NA	6q16.1	EPHA7	rs9363058-?		8E-6				Affymetrix, Illumina [1348798]	N
1302	chr6	94037399	94037400	rs164556	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Eubacterium belonging to family Erysipelotrichaceae)	1,068 Japanese ancestry individuals	NA	6q16.1	EPHA7	rs164556-G	0.23	1E-6	(female)	0.686	[0.41-0.96] unit decrease	Illumina [6380737] (imputed)	N
1302	chr6	94075926	94075927	rs143547391	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Anthropometric traits (multi-trait analysis)	4,988 Spanish ancestry individuals	336,107 British ancestry individuals	6q16.1	EPHA7	rs143547391-?		7E-10				Illumina [9499600] (imputed)	N
1302	chr6	94083122	94083123	rs351328	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	6q16.1	EPHA7, COPS5P, TSG1	rs351328-A	0.079	7E-6		2.7	[1.73-4.23]	Illumina [1556551]	N
1303	chr6	94130056	94130057	rs78132896	30357299	De T	2018-10-01	JAMA	Association of Genetic Variants With Warfarin-Associated Bleeding Among Patients of African Descent.	Warfarin-associated bleeding	31 African American cases, 184 African American controls	40 African American cases, 148 African American controls	6q16.1	NR	rs78132896-C	NR	2E-11		8.27	[4.18-16.38]	Illumina [8152232] (imputed)	N
1303	chr6	94175278	94175279	rs619087	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	6q16.1	NR	rs619087-G	0.422	3E-8		0.014270335	[0.0092-0.0193] unit increase	NR [~ 10000000] (imputed)	N
1303	chr6	94190743	94190744	rs147643734	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder	29,475 European ancestry cases, 63,482 European ancestry controls	NA	6q16.1	NR	rs147643734-A	0.9601256	6E-6		1.0706638	[1.04-1.1]	Affymetrix [7791636] (imputed)	N
1303	chr6	94206243	94206244	rs9452333	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	6q16.1	NR	rs9452333-C	0.581	4E-11		0.00721496	[0.0051-0.0094] unit decrease	NR [9732723] (imputed)	N
1305	chr6	94489218	94489219	rs9345396	26089329	Carty CL	2015-06-18	Stroke	Meta-Analysis of Genome-Wide Association Studies Identifies Genetic Risk Factors for Stroke in African Americans.	Stroke	up to 1,592 African American cases, up to 13,154 African American controls	NA	6q16.1	TSG1	rs9345396-T	0.01	1E-7	(cohort study)	5.78	[3.03-11.02]	Affymetrix, Illumina [up to 2600000] (imputed)	N
1305	chr6	94489218	94489219	rs9345396	26089329	Carty CL	2015-06-18	Stroke	Meta-Analysis of Genome-Wide Association Studies Identifies Genetic Risk Factors for Stroke in African Americans.	Stroke	up to 1,592 African American cases, up to 13,154 African American controls	NA	6q16.1	TSG1	rs9345396-T	0.01	1E-7		1.75	[1.1-2.4] unit increase	Affymetrix, Illumina [up to 2600000] (imputed)	N
1305	chr6	94498849	94498850	rs10944696	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	6q16.1	NR	rs10944696-G	0.7022	8E-9		1.0384216	[1.02-1.05]	Affymetrix, Illumina [NR] (imputed)	N
1306	chr6	94543560	94543561	rs12529374	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	6q16.1		rs12529374-C	0.48	3E-8		5.57	z score increase	Affymetrix [9061022] (imputed)	N
1306	chr6	94570857	94570858	rs72924216	31164008	Mullins N	2019-06-05	Am J Psychiatry	GWAS of Suicide Attempt in Psychiatric Disorders and Association With Major Depression Polygenic Risk Scores.	Suicide attempts in bipolar disorder or schizophrenia	3,264 European ancestry attempters with bipolar disorder, 5,500 European ancestry nonattempters with bipolar disorder, 1,683 European ancestry attempters with schizophrenia, 2,946 European ancestry nonattempters with schizophrenia	NA	6q16.1	NR	rs72924216-G	0.040000000000000036	9E-6		1.3888888	[1.2-1.59]	NR [at least 8807005] (imputed)	N
1306	chr6	94581303	94581304	rs11757307	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	6q16.1	NR	rs11757307-G	0.43	3E-9				NR [9056863] (imputed)	N
1306	chr6	94597945	94597946	rs7776258	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental extreme longevity (95 years and older)	1,339 middle-aged British cases, 40,934 middle-aged British controls	NA	6q16.1	NR	rs7776258-?	NR	9E-6		0.01755	[0.0098-0.0253] unit decrease	Affymetrix [9658292] (imputed)	N
1307	chr6	94677084	94677085	rs1565189	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	6q16.1	NR	rs1565189-?	NR	5E-6				Affymetrix [NR]	N
1307	chr6	94678896	94678897	rs17708311	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	6q16.1		rs17708311-C	NR	4E-9		0.0273	[0.018-0.037] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1307	chr6	94679685	94679686	rs1352378	34624637	Zainul Abidin FN	2021-09-21	Neuroimage Clin	Glucose hypometabolism in the Auditory Pathway in Age Related Hearing Loss in the ADNI cohort.	Age related hearing loss-related regional glucose metabolism (Inferior colliculus)	228 European ancestry cases, 587 European ancestry controls	NA	6q16.1		rs1352378-?	NR	7E-6		0.223	[0.13-0.32] unit decrease	Illumina [5082878] (imputed)	N
1307	chr6	94762333	94762334	rs2787943	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 7)	19,670 European ancestry individuals	NA	6q16.1		rs2787943-?	NR	3E-13				NR [9705931] (imputed)	N
1308	chr6	94768583	94768584	rs17505878	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (hospitalized covid vs population)	613 European ancestry cases, 680,416 European ancestry controls, 140 Hispanic or Latin American cases, 94,327 Hispanic or Latin American controls, 49 Black or African American cases, 22,410 Black or African American controls	NA	6q16.1		rs17505878-?	NR	8E-6		0.7288442	[0.41-1.05] unit decrease	Illumina [9875426] (imputed)	N
1308	chr6	94769450	94769451	rs62413965	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	6q16.1		rs62413965-A	0.4	3E-11		6.65	z score increase	Affymetrix [9061022] (imputed)	N
1308	chr6	94769450	94769451	rs62413965	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	6q16.1	NR	rs62413965-A	0.3796	1E-10				NR [9056863] (imputed)	N
1308	chr6	94780342	94780343	rs3930560	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	6q16.1		rs3930560-G	0.42	1E-20		9.33	z score increase	Affymetrix [9061022] (imputed)	N
1309	chr6	94913573	94913574	rs112215522	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Chin dimples	58,032 European ancestry cases, 13,457 European ancestry controls	NA	6q16.1	EPHA7	rs112215522-?	NR	4E-8		1.092	[1.058-1.127]	Illumina [13537761] (imputed)	N
1309	chr6	94980572	94980573	rs220970	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	6q16.1	NR	rs220970-?	NR	3E-8				Affymetrix [NR]	N
1310	chr6	95049614	95049615	rs459393	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6q16.1	NR	rs459393-?	NR	1E-6		4.892	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1310	chr6	95096689	95096690	rs12196652	30319691	Liu C	2018-09-24	Front Genet	Genome-Wide Association and Mechanistic Studies Indicate That Immune Response Contributes to Alzheimer's Disease Development.	Cerebrospinal fluid t-tau:AB1-42 ratio	235 early mild cognitive impairment cases, 249 late mild cognitive impairment cases, 47 Alzheimer's disease cases, 281 controls.	NA	6q16.1	Intergenic	rs12196652-?		3E-6		0.06547607	[NR] unit decrease	Illumina [575353]	N
1310	chr6	95096689	95096690	rs12196652	30319691	Liu C	2018-09-24	Front Genet	Genome-Wide Association and Mechanistic Studies Indicate That Immune Response Contributes to Alzheimer's Disease Development.	Cerebrospinal fluid p-Tau181p:AB1-42 ratio	235 early mild cognitive impairment cases, 249 late mild cognitive impairment cases, 47 Alzheimer's disease cases, 281 controls.	NA	6q16.1	Intergenic	rs12196652-?		4E-6		0.006901511	[NR] unit decrease	Illumina [575353]	N
1310	chr6	95110397	95110398	rs80249819	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	6q16.1	NR	rs80249819-?	NR	3E-6		2162.9292	NR unit decrease	Illumina [2379855]	N
1310	chr6	95112804	95112805	rs72927277	33824429	Fjukstad KK	2021-04-06	Pharmacogenomics J	Genetic variants associated with cardiometabolic abnormalities during treatment with selective serotonin reuptake inhibitors: a genome-wide association study.	LDL levels x SSRI levels (escitalopram or citalopram) interaction in schizophrenia or bipolar disorder	181 European ancestry individuals	NA	6q16.1	RP3-399J4.4	rs72927277-A	NR	7E-6		11.7895	[7.54-16.04] unit decrease	Illumina [NR] (imputed)	N
1310	chr6	95145838	95145839	rs117793402	30705256	Koshimizu H	2019-01-31	Transl Psychiatry	Genome-wide association study identifies a novel locus associated with psychological distress in the Japanese population.	Psychological distress	3,981 Japanese ancestry cases, 6,349 Japaneses ancestry controls	NA	6q16.1	NR	rs117793402-C	0.0185	8E-6		1.7898692	[1.53-2.04]	Illumina [8567708] (imputed)	N
1310	chr6	95156417	95156418	rs2224003	23471985	Jahanshad N	2013-03-05	Proc Natl Acad Sci U S A	Genome-wide scan of healthy human connectome discovers SPON1 gene variant influencing dementia severity.	Brain connectivity	331 European ancestry individuals		6q16.1	intergenic	rs2224003-?	NR	1E-9	(Strength - R-pars opercularis)			Illumina [428287]	N
1310	chr6	95156453	95156454	rs10485022	23471985	Jahanshad N	2013-03-05	Proc Natl Acad Sci U S A	Genome-wide scan of healthy human connectome discovers SPON1 gene variant influencing dementia severity.	Brain connectivity	331 European ancestry individuals		6q16.1	intergenic	rs10485022-?	NR	5E-9	(Strength - R-pars opercularis)			Illumina [428287]	N
1311	chr6	95177966	95177967	rs7762066	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Stem cell growth factor beta levels	3,682 Finnish ancestry individuals	NA	6q16.1	NR	rs7762066-C		3E-6		0.1389	[0.08-0.198] SD units decrease	NR [10700000] (imputed)	N
1311	chr6	95198626	95198627	rs143401417	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6q16.1	NR	rs143401417-A	0.01742	2E-8	(OAT)	0.04776	NR unit increase	Illumina [1671387] (imputed)	N
1311	chr6	95211551	95211552	rs222548	25987507	Minica CC	2015-05-19	Behav Genet	Heritability, SNP- and Gene-Based Analyses of Cannabis Use Initiation and Age at Onset.	Cannabis use (initiation)	1,357 European ancestry users, 5,387 European ancestry never users	NA	6q16.1	NR	rs222548-T	NR	6E-6		0.6	[0.35-0.85] unit decrease	NR [5896100] (imputed)	N
1311	chr6	95222552	95222553	rs222564	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6q16.1	NR	rs222564-A	0.073	8E-6	(IFNgamma_STAT1_of_Monocytes)			Illumina [5084123] (imputed)	N
1311	chr6	95246453	95246454	rs117241091	30705256	Koshimizu H	2019-01-31	Transl Psychiatry	Genome-wide association study identifies a novel locus associated with psychological distress in the Japanese population.	Psychological distress	3,981 Japanese ancestry cases, 6,349 Japaneses ancestry controls	NA	6q16.1	TSG1	rs117241091-A	0.0246	6E-6		1.6385384	[1.21-2.52]	Illumina [8567708] (imputed)	N
1311	chr6	95278532	95278533	rs2750030	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	6q16.1	NR	rs2750030-?	NR	1E-9				Affymetrix [NR]	N
1313	chr6	95422617	95422618	rs4145130	19901119	Trevino LR	2009-11-09	J Clin Oncol	Germline genetic variation in an organic anion transporter polypeptide associated with methotrexate pharmacokinetics and clinical effects.	Methotrexate pharmacokinetics (acute lymphoblastic leukemia)	315 European ancestry cases, 73 African American cases, 5 Asian ancestry cases, 247 cases	NA	6q16.1	intergenic	rs4145130-A	0.06	1E-7			[NR]	Affymetrix [398699]	N
1314	chr6	95557470	95557471	rs9354144	29695241	Charmet R	2018-04-25	Cardiovasc Diabetol	Novel risk genes identified in a genome-wide association study for coronary artery disease in patients with type 1 diabetes.	Coronary artery disease in type 1 diabetes	434 European ancestry cases with coronary artery disease, 3,123 European ancestry cases without coronary artery disease	585 cases with coronary artery disease, 2,612 cases without coronary artery disease	6q16.1	MANEA-AS1	rs9354144-A	0.105	6E-6	(EA)	1.71	[NR]	Illumina [6728637] (imputed)	N
1314	chr6	95560241	95560242	rs197880	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter non-alcoholic beverage consumption	85,852 European ancestry individuals	39,924 European ancestry individuals	6q16.1	MANEA-AS1	rs197880-T	0.9159	4E-7		0.0147	[0.009-0.0204] unit increase	Affymetrix [~ 7740000] (imputed)	N
1314	chr6	95649303	95649304	rs9345537	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	UBA6398 sp002451695 abundance in stool	5,959 Finnish ancestry individuals	NA	6q16.1		rs9345537-T	0.020487	9E-10		0.235637	[0.16-0.31] unit increase	Illumina [7980478] (imputed)	N
1316	chr6	95914411	95914412	rs185296986	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	6q16.1	NR	rs185296986-G	NR	2E-6	(GEE model)	0.95756	[0.57-1.35] unit decrease	NR [NR] (imputed)	N
1317	chr6	95949745	95949746	rs13200245	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	6q16.1	NR	rs13200245-A	0.840884	2E-8		0.00928557	[0.006-0.0126] unit increase	Affymetrix [16585854] (imputed)	N
1317	chr6	95967411	95967412	rs2380220	23942779	McGue M	2013-08-14	Behav Genet	A genome-wide association study of behavioral disinhibition.	Behavioural disinhibition (generation interaction)	3,852 European ancestry parents, 3,336 European ancestry offspring	NA	6q16.1	intergenic	rs2380220-A	0.159	4E-6	(Alcohol dependence)			Illumina [527829]	N
1317	chr6	96009497	96009498	rs80268500	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6q16.1	MANEA	rs80268500-C	0.082	2E-518	(Glycoprotein endo-alpha-1,2-mannosidase, MANEA.8014.359.3)	1.68	[1.62-1.74] unit decrease	Affymetrix [10572788] (imputed)	N
1317	chr6	96012262	96012263	rs75298013	33574277	Kawai Y	2021-02-11	NPJ Genom Med	Mapping of susceptible variants for cold medicine-related Stevens-Johnson syndrome by whole-genome resequencing.	Cold medicine-related Stevens-Johnson syndrome/toxic epidermal necrolysis (SJS/TEN) with severe ocular complications	133 Japanese ancestry cases, 418 Japanese ancestry controls	NA	6q16.1		rs75298013-T	0.2368	4E-7		2.45		Illumina [7608150]	N
1317	chr6	96013809	96013810	rs13206446	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	6q16.1		rs13206446-G	NR	1E-8		0.0197	[0.013-0.026] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
1317	chr6	96014283	96014287	rs374994702	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6q16.1	NR	rs374994702-G	0.113	1E-12	(Glycoprotein endo-alpha-1,2-mannosidase, MANEA.8014.359.3)	0.27	[0.19-0.35] unit decrease	Affymetrix [10572788] (imputed)	N
1317	chr6	96031110	96031111	rs9398417	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6q16.1	NR	rs9398417-T	0.588	3E-37	(Glycoprotein endo-alpha-1,2-mannosidase, MANEA.8014.359.3)	0.31	[0.27-0.35] unit decrease	Affymetrix [10572788] (imputed)	N
1317	chr6	96070937	96070938	rs11754325	31668963	Bay CP	2019-09-27	J Clin Densitom	Genome-Wide Association Analysis of Longitudinal Bone Mineral Content Data From the Iowa Bone Development Study.	Peak hip bone mineral content	190 women, 174 men	NA	6q16.1	NR	rs11754325-G	0.07	4E-6		4.6	[2.7-6.5] g increase	Illumina [509842]	N
1318	chr6	96078825	96078826	rs4472353	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	6q16.1	NR	rs4472353-C	0.8415509999999999	1E-8		0.00665541	[0.0044-0.0089] unit increase	Affymetrix [16582909] (imputed)	N
1318	chr6	96078825	96078826	rs4472353	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	6q16.1	NR	rs4472353-C	0.8415509999999999	6E-6		0.00610931	[0.0036-0.0086] unit increase	Affymetrix [16582965] (imputed)	N
1318	chr6	96082115	96082116	rs35064159	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	6q16.1	MANEA, FUT9	rs35064159-C	0.082	3E-9		5.91	z-score increase	Affymetrix [4314223] (imputed)	N
1318	chr6	96082489	96082490	rs72928283	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MANEA	5,335 Icelandic ancestry individuals	NA	6q16.1		rs72928283-C	0.1712	2E-65		0.385974	[0.34-0.43] unit increase	Illumina [7506463] (imputed)	N
1318	chr6	96082978	96082979	rs4413619	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6q16.1	MANEA	rs4413619-C	0.8684375	8E-531	(MANEA, 8014_359_3)	1.5095217	[1.46-1.56] unit increase	Illumina [> 1000000] (imputed)	N
1318	chr6	96093577	96093578	rs557830113	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6q16.1	NR	rs557830113-?	NR	5E-6		4.567	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1318	chr6	96113243	96113244	rs61337180	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	6q16.1		rs61337180-C	NR	9E-6		2.4458	[1.39-3.5] unit increase	Illumina [NR] (imputed)	N
1318	chr6	96141834	96141835	rs185225639	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mononucleosis	17,457 European ancestry cases, 68,446 European ancestry controls	NA	6q16.1	NR	rs185225639-?	NR	5E-6		6.6905	[0.53-12.85] unit increase	Illumina [at least 560000] (imputed)	N
1318	chr6	96179003	96179004	rs143247165	24159190	Seppala I	2013-10-24	Eur Heart J	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Symmetrical dimethylarginine levels	5110 European ancestry individuals	NA	6q16.1	NR	rs143247165-A	0.006	8E-6		0.713	[0.4-1.03] unit decrease	Affymetrix, Illumina [10085758] (imputed)	N
1318	chr6	96186761	96186761	rs552453253	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	6q16.1		rs552453253-?	NR	4E-10				Affymetrix [NR] (imputed)	N
1319	chr6	96214298	96214299	rs4642480	28322283	Chibnik LB	2017-03-21	Mol Psychiatry	Susceptibility to neurofibrillary tangles: role of the PTPRD locus and limited pleiotropy with other neuropathologies.	Neuritic plaque	909 European ancestry individuals	369 individuals	6q16.1		rs4642480-G	0.48	9E-6	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1320	chr6	96341766	96341767	rs71560357	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder	29,475 European ancestry cases, 63,482 European ancestry controls	NA	6q16.1	NR	rs71560357-T	0.0102767	8E-6		1.066	[1.04-1.1]	Affymetrix [7791636] (imputed)	N
1320	chr6	96346574	96346575	rs117488988	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	6q16.1	NR	rs117488988-A	NR	5E-6		1.08	[NR]	Illumina [7158791] (imputed)	N
1320	chr6	96376697	96376698	rs608114	25461247	Lehmann DS	2015-02-01	Pharmacogenet Genomics	Genome-wide association study of virologic response with efavirenz-containing or abacavir-containing regimens in AIDS clinical trials group protocols.	Response to efavirenz-containing treatment in HIV 1 infection (virologic failure)	Up to 737 European ancestry individuals, Up to 545 Black individuals, Up to 314 Hispanic individuals	NA	6q16.1	NR	rs608114-A	NR	3E-7	(phenotype 1)	4.84	[NR]	Illumina [> 8000000] (imputed)	N
1320	chr6	96376697	96376698	rs608114	25461247	Lehmann DS	2015-02-01	Pharmacogenet Genomics	Genome-wide association study of virologic response with efavirenz-containing or abacavir-containing regimens in AIDS clinical trials group protocols.	Response to abacavir-containing treatment in HIV-1 infection (virologic failure)	Up 346 European ancestry individuals, Up to 265 Black individuals, Up to 175 Hispanic individuals	NA	6q16.1	NR	rs608114-A	NR	3E-7	(phenotype 3)	4.84	[NR]	Illumina [> 8000000] (imputed)	N
1320	chr6	96440033	96440034	rs2294839	33574277	Kawai Y	2021-02-11	NPJ Genom Med	Mapping of susceptible variants for cold medicine-related Stevens-Johnson syndrome by whole-genome resequencing.	Cold medicine-related Stevens-Johnson syndrome/toxic epidermal necrolysis (SJS/TEN) with severe ocular complications	133 Japanese ancestry cases, 418 Japanese ancestry controls	NA	6q16.1		rs2294839-G	0.3233	4E-7		2.221		Illumina [7608150]	N
1320	chr6	96459650	96459651	rs117074560	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Schizophrenia (MTAG)	at least 33,640 European ancestry cases, at least 43,456 European ancestry controls	NA	6q16.1	NR	rs117074560-T	0.0378	7E-9		0.15593413	[0.1-0.21] unit decrease	NR [NR]	N
1320	chr6	96459650	96459651	rs117074560	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	6q16.1	NR	rs117074560-?	NR	5E-10		1.180331	[1.13-1.23]	Affymetrix, Illumina [12447948] (imputed)	N
1320	chr6	96459650	96459651	rs117074560	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	6q16.1	FUT9	rs117074560-?	NR	4E-9		0.028000625	[0.019-0.037] unit increase	NR [7306098]	N
1320	chr6	96459650	96459651	rs117074560	29483656	Pardinas AF	2018-02-26	Nat Genet	Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.	Schizophrenia	40,675 European ancestry cases, 64,643 European ancestry controls	1,651 European ancestry cases, 4,111 cases, 142,717 European ancestry controls, 11,507 controls	6q16.1	FUT9	rs117074560-?	NR	1E-6				Illumina [8000000] (imputed)	N
1320	chr6	96459650	96459651	rs117074560	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	6q16.1	NR	rs117074560-C	NR	5E-9		1.1764705	[NR]	Illumina [7158791] (imputed)	N
1320	chr6	96459650	96459651	rs117074560	25056061	Ripke S	2014-07-22	Nature	Biological insights from 108 schizophrenia-associated genetic loci.	Schizophrenia	32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	1,513 European ancestry cases, 66,236 European ancestry controls	6q16.1	FUT9	rs117074560-C	0.9524	2E-9		1.1778563	[1.12-1.24]	Affymetrix, Illumina [9005918] (imputed)	N
1321	chr6	96493142	96493143	rs2224951	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	6q16.1	NA	rs2224951-G		9E-9		0.0106622	[0.007-0.0143] unit increase	Illumina [13288253] (imputed)	N
1321	chr6	96508388	96508389	rs9498925	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6q16.1		rs9498925-T	0.4469	1E-9	(conditional-joint)	0.0085	[0.0058-0.0112] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1321	chr6	96519656	96519657	rs7775100	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6q16.1		rs7775100-T	0.3906	1E-9		0.0087	[0.006-0.0114] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1321	chr6	96519999	96520000	rs7763181	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6q16.1	Intergenic	rs7763181-T	0.3897	1E-9	(MTAG)	0.0082	[0.0057-0.0107] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1321	chr6	96530098	96530099	rs4598084	26305897	Iyengar SK	2015-08-25	PLoS Genet	Genome-Wide Association and Trans-ethnic Meta-Analysis for Advanced Diabetic Kidney Disease: Family Investigation of Nephropathy and Diabetes (FIND).	Diabetic kidney disease	up to 1,564 African American cases, 369  African American diabetic controls, 1,288 African American non-diabetic controls, 538 American Indian ancestry cases, 319 American Indian ancestry diabetic controls, 342 European ancestry cases, 404 European ancestry diabetic controls, 779 Mexican ancestry cases, 594 Mexican ancestry diabetic controls	NA	6q16.1	NR	rs4598084-?	0.64	3E-6	(African American, recessive)	1.6666665	[1.33-2.04]	Affymetrix [NR]	N
1321	chr6	96532137	96532138	rs188387184	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	6q16.1		rs188387184-T	NR	5E-6		3.1317	[1.82-4.45] unit increase	Illumina [NR] (imputed)	N
1321	chr6	96565161	96565162	rs4839813	31888951	Schlauch KA	2019-12-30	G3 (Bethesda)	A Comprehensive Genome-Wide and Phenome-Wide Examination of BMI and Obesity in a Northern Nevadan Cohort.	Body mass index	5,994 non-diabetic individuals	NA	6q16.1	FUT9	rs4839813-T	0.0969	3E-6		0.8755	[0.51-1.24] unit increase	Illumina [500508]	N
1322	chr6	96647981	96647982	rs142123475	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	6q16.1	FUT9, UFL1-AS1, KRT18P50	rs142123475-A	NR	1E-6	(sleep efficiency, weekdays)	6.379	[3.82-8.94] unit decrease	Affymetrix [7141204] (imputed)	N
1323	chr6	96732256	96732257	rs4599655	30557369	Yodsurang V	2018-12-17	PLoS One	Genome-wide association study (GWAS) of ovarian cancer in Japanese predicted regulatory variants in 22q13.1.	Ovarian cancer	681 Japanese ancestry cases, 17,492 Japanese ancestry controls	NA	6q16.1	FUT9	rs4599655-A	0.1365	8E-6		1.3927578	[1.21-1.61]	Illumina [7521072] (imputed)	N
1323	chr6	96823032	96823033	rs76306025	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	6q16.1		rs76306025-T	NR	2E-6		3.434	[2.06-4.81] unit increase	Illumina [NR] (imputed)	N
1323	chr6	96839038	96839039	rs767619	28641744	Guo W	2017-07-01	Eur Neuropsychopharmacol	Polygenic risk score and heritability estimates reveals a genetic relationship between ASD and OCD.	Obsessive-compulsive disorder or autism spectrum disorder	2,998 European ancestry obsessive-compulsive disorder cases, 6,898 European ancestry autism spectrum disorder cases	NA	6q16.1	FUT9	rs767619-T	NR	9E-6		45.9769	[25.63-66.32] unit decrease	Illumina [6995140] (imputed)	N
1323	chr6	96848668	96848669	rs2499797	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	6q16.1	UFL1	rs2499797-G	0.164775	9E-9		0.0153808	[0.01-0.021] unit increase	Affymetrix [NR] (imputed)	N
1323	chr6	96853966	96853967	rs4839827	27322543	Gormley P	2016-06-20	Nat Genet	Meta-analysis of 375,000 individuals identifies 38 susceptibility loci for migraine.	Migraine	59,674 European ancestry cases, 316,078 European ancestry controls	NA	6q16.1	FUT9, FHL5, UFL1	rs4839827-C	0.47	6E-10		1.05	[1.03-1.06]	Affymetrix, Illumina, Perlegen [8094889] (imputed)	N
1323	chr6	96858452	96858453	rs7770889	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (antimigraine preparations)	5,521 European ancestry cases, 114,323 European ancestry controls	NA	6q16.1	UFL1-AS1	rs7770889-T	0.347302	1E-13		0.15099125	[0.11-0.19] unit increase	Affymetrix [7288503] (imputed)	N
1324	chr6	96863325	96863326	rs4839828	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antimigraine preparations)	5,521 European ancestry cases, 114,323 European ancestry controls, 387 East Asian ancestry cases, 178,339 East Asian ancestry controls	NA	6q16.1		rs4839828-A	NR	2E-14		0.1502	[0.11-0.19] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1324	chr6	96884885	96884886	rs11757063	22683712	Freilinger T	2012-06-10	Nat Genet	Genome-wide association analysis identifies susceptibility loci for migraine without aura.	Migraine	2,326 European ancestry cases, 4,580 European ancestry controls	2,508 European ancestry cases, 2,652 European ancestry controls	6q16.1	FHL5	rs11757063-A	0.21	6E-8		1.2	[1.12-1.28]	Illumina [1246388] (imputed)	N
1324	chr6	96885404	96885405	rs35410524	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	6q16.1	FUT9, UFL1	rs35410524-C		5E-7	(EA)	0.377	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1324	chr6	96885404	96885405	rs35410524	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	6q16.1	FUT9, UFL1	rs35410524-C		3E-8		0.385	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1324	chr6	96885404	96885405	rs35410524	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	6q16.1	FUT9, UFL1	rs35410524-C		5E-10		0.305	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1324	chr6	96885404	96885405	rs35410524	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	6q16.1	FUT9, UFL1	rs35410524-C		4E-7		0.166	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1324	chr6	96885404	96885405	rs35410524	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	6q16.1	FUT9, UFL1	rs35410524-C		9E-6	(EA)	0.217	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1324	chr6	96885404	96885405	rs35410524	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	6q16.1	FUT9, UFL1	rs35410524-C		1E-6		0.22	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1324	chr6	96886894	96886894	rs144345632	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 17, height of vermillion upper lip)	2,187 European ancestry individuals	NA	6q16.1	NR	rs144345632-TA	0.1967	3E-6		0.1732	[0.1-0.25] unit increase	Illumina [10677593] (imputed)	N
1324	chr6	96893599	96893600	rs75842709	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	6q16.1	UFL1-AS1, UFL1, FHL5, RPS7P8	rs75842709-T	NR	1E-8	(sleep efficiency, weekdays)	5.711	[3.74-7.68] unit decrease	Affymetrix [7141204] (imputed)	N
1324	chr6	96927847	96927848	rs116842147	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder	29,475 European ancestry cases, 63,482 European ancestry controls	NA	6q16.1	NR	rs116842147-T	0.0105958	6E-7		1.075	[1.05-1.1]	Affymetrix [7791636] (imputed)	N
1324	chr6	96929474	96929475	rs4262195	34929384	Mekki Y	2021-12-17	Neuroimage	The genetic architecture of language functional connectivity.	Language functional connectivity	32,186 British ancestry individuals	NA	6q16.1	UFL1, AS1	rs4262195-T	0.181	7E-9		5.786258	unit increase (z-stat)	Affymetrix [9812367] (imputed)	N
1324	chr6	96936060	96936061	rs11152989	33128006	Timmins IR	2020-10-30	Commun Biol	Genome-wide association study of self-reported walking pace suggests beneficial effects of brisk walking on health and survival.	Walking pace	450,967 European ancestry individuals	NA	6q16.1	UFL1	rs11152989-C	NR	3E-9		0.00798169	[0.0053-0.0106] unit increase	Affymetrix [10061374] (imputed)	N
1324	chr6	96936060	96936061	rs11152989	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	Systolic blood pressure	291,107 British ancestry individuals	NA	6q16.1	UFL1-AS1	rs11152989-T	0.31437099	1E-9		0.315311	[0.21-0.42] unit increase	Affymetrix [9463307] (imputed)	N
1324	chr6	96946395	96946396	rs142225706	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	6q16.1		rs142225706-C	NR	3E-6		3.3235	[1.96-4.69] unit increase	Illumina [NR] (imputed)	N
1324	chr6	96956136	96956137	rs11153018	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	6q16.1	intergenic	rs11153018-A	0.1799	1E-11		0.304	[0.22-0.39] mmHg increase	Affymetrix [NR] (imputed)	N
1325	chr6	97029870	97029871	rs2983896	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	6q16.1		rs2983896-A	NR	4E-14		0.017	[0.013-0.021] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
1325	chr6	97029870	97029871	rs2983896	32632093	Guo Y	2020-07-06	Nat Commun	A genome-wide cross-phenotype meta-analysis of the association of blood pressure with migraine.	Migraine without aura and/or systolic blood pressure	757,601 European ancestry individuals with blood pressure measurements, up to 59,674 European ancestry migraine cases, 316,078 European ancestry controls	NA	6q16.1	NR	rs2983896-?	NR	1E-24				NR [up to 7000000]	N
1325	chr6	97029870	97029871	rs2983896	32632093	Guo Y	2020-07-06	Nat Commun	A genome-wide cross-phenotype meta-analysis of the association of blood pressure with migraine.	Migraine without aura and/or pulse pressure	757,601 European ancestry individuals with blood pressure measurements, up to 59,674 European ancestry migraine cases, 316,078 European ancestry controls	NA	6q16.1	NR	rs2983896-?	NR	2E-24				NR [up to 7000000]	N
1325	chr6	97029870	97029871	rs2983896	32632093	Guo Y	2020-07-06	Nat Commun	A genome-wide cross-phenotype meta-analysis of the association of blood pressure with migraine.	Migraine with aura and/or systolic blood pressure	757,601 European ancestry individuals with blood pressure measurements, up to 59,674 European ancestry migraine cases, 316,078 European ancestry controls	NA	6q16.1	NR	rs2983896-?	NR	3E-26				NR [up to 7000000]	N
1325	chr6	97029870	97029871	rs2983896	32632093	Guo Y	2020-07-06	Nat Commun	A genome-wide cross-phenotype meta-analysis of the association of blood pressure with migraine.	Migraine with aura and/or pulse pressure	757,601 European ancestry individuals with blood pressure measurements, up to 59,674 European ancestry migraine cases, 316,078 European ancestry controls	NA	6q16.1	NR	rs2983896-?	NR	8E-22				NR [up to 7000000]	N
1325	chr6	97029870	97029871	rs2983896	32632093	Guo Y	2020-07-06	Nat Commun	A genome-wide cross-phenotype meta-analysis of the association of blood pressure with migraine.	Migraine and/or systolic blood pressure	757,601 European ancestry individuals with blood pressure measurements, 59,674 European ancestry migraine cases, 316,078 European ancestry controls	NA	6q16.1	NR	rs2983896-?	NR	2E-37				NR [up to 7000000]	N
1325	chr6	97029870	97029871	rs2983896	32632093	Guo Y	2020-07-06	Nat Commun	A genome-wide cross-phenotype meta-analysis of the association of blood pressure with migraine.	Migraine and/or pulse pressure	757,601 European ancestry individuals with blood pressure measurements, 59,674 European ancestry migraine cases, 316,078 European ancestry controls	NA	6q16.1	NR	rs2983896-?	NR	3E-36				NR [up to 7000000]	N
1325	chr6	97033369	97033370	rs3798293	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	6q16.1		rs3798293-G	NR	2E-9		0.0148	[0.0099-0.0197] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
1325	chr6	97033369	97033370	rs3798293	32632093	Guo Y	2020-07-06	Nat Commun	A genome-wide cross-phenotype meta-analysis of the association of blood pressure with migraine.	Migraine without aura and/or diastolic blood pressure	757,601 European ancestry individuals with blood pressure measurements, up to 59,674 European ancestry migraine cases, 316,078 European ancestry controls	NA	6q16.1	NR	rs3798293-?	NR	8E-15				NR [up to 7000000]	N
1325	chr6	97033369	97033370	rs3798293	32632093	Guo Y	2020-07-06	Nat Commun	A genome-wide cross-phenotype meta-analysis of the association of blood pressure with migraine.	Migraine with aura and/or diastolic blood pressure	757,601 European ancestry individuals with blood pressure measurements, up to 59,674 European ancestry migraine cases, 316,078 European ancestry controls	NA	6q16.1	NR	rs3798293-?	NR	1E-12				NR [up to 7000000]	N
1325	chr6	97033369	97033370	rs3798293	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	6q16.1	FHL5	rs3798293-G	0.7952	6E-9		0.1884	[0.12-0.25] mmHg decrease	Affymetrix [NR] (imputed)	N
1325	chr6	97035417	97035418	rs2971603	32632093	Guo Y	2020-07-06	Nat Commun	A genome-wide cross-phenotype meta-analysis of the association of blood pressure with migraine.	Migraine and/or diastolic blood pressure	757,601 European ancestry individuals with blood pressure measurements, 59,674 European ancestry migraine cases, 316,078 European ancestry controls	NA	6q16.1	NR	rs2971603-?	NR	6E-27				NR [up to 7000000]	N
1325	chr6	97039664	97039665	rs2971609	28627999	Ikram MA	2017-06-19	J Cereb Blood Flow Metab	Heritability and genome-wide associations studies of cerebral blood flow in the general population.	Cerebral blood flow	4,472 Dutch individuals	1,350 Icelandic individuals	6q16.1	FHL5	rs2971609-?	NR	3E-9	(right carotid flow velocity)			Illumina [NR]	N
1325	chr6	97039740	97039741	rs11153071	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	6q16.1		rs11153071-A	NR	3E-14		0.0192	[0.014-0.024] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1325	chr6	97039740	97039741	rs11153071	33199917	Bakker MK	2020-11-16	Nat Genet	Genome-wide association study of intracranial aneurysms identifies 17 risk loci and genetic overlap with clinical risk factors.	Intracranial aneurysm	7,495 European ancestry cases, 3,259 East Asian ancestry cases, 71,934 European ancestry controls, 234,948 East Asian ancestry controls	NA	6q16.1	NR	rs11153071-A	0.158	1E-9		0.153	[0.1-0.2] unit increase	Affymetrix, Illumina [3527309] (imputed)	N
1325	chr6	97039740	97039741	rs11153071	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	6q16.1		rs11153071-?	NR	3E-15				NR [~ 8900000] (imputed)	N
1325	chr6	97042146	97042147	rs67338227	27322543	Gormley P	2016-06-20	Nat Genet	Meta-analysis of 375,000 individuals identifies 38 susceptibility loci for migraine.	Migraine	59,674 European ancestry cases, 316,078 European ancestry controls	NA	6q16.1	FHL5, UFL1, FUT9	rs67338227-T	0.23	2E-27		1.09	[1.08-1.11]	Affymetrix, Illumina, Perlegen [8094889] (imputed)	N
1325	chr6	97056978	97056979	rs7775721	27322543	Gormley P	2016-06-20	Nat Genet	Meta-analysis of 375,000 individuals identifies 38 susceptibility loci for migraine.	Migraine without aura	8,348 European ancestry cases, 139,622 European ancestry controls	NA	6q16.1	FHL5, UFL1	rs7775721-T	0.33	1E-12		1.15	[1.11-1.20]	Affymetrix, Illumina, Perlegen [8094889] (imputed)	N
1325	chr6	97058930	97058931	rs9486705	32121467	Adewuyi EO	2020-02-29	Genes (Basel)	Shared Molecular Genetic Mechanisms Underlie Endometriosis and Migraine Comorbidity.	Endometriosis or migraine	17,054 European and Japanese ancestry endometriosis cases, 29,208 European ancestry migraine cases, 191,858 European and Japanese ancestry controls, 172,931 European ancestry controls	NA	6q16.1	NR	rs9486705-C	NR	6E-6	(random effect)	1.1111112	NR	NR [6904914] (imputed)	N
1325	chr6	97059665	97059666	rs11153082	34184781	O'Connor E	2021-06-29	Ann Neurol	Genome Wide Association Study Identifies Risk Loci For Cluster Headache.	Cluster headache	1,443 European ancestry cases, 6,748 European ancestry controls	NA	6q16.1	FHL5	rs11153082-G	0.33	2E-8		1.3	[1.19-1.42]	Illumina [NR] (imputed)	N
1325	chr6	97059768	97059769	rs9486715	29397368	Meng W	2018-01-31	EBioMedicine	A Genome-Wide Association Study Finds Genetic Associations with Broadly-Defined Headache in UK Biobank (N=223,773).	Headache	74,461 British ancestry cases, 149,321 British ancestry controls	NA	6q16.1	FHL5, UFL1	rs9486715-C	NR	3E-31		0.0171	[0.014-0.02] unit increase	Affymetrix [9304965] (imputed)	N
1325	chr6	97060123	97060124	rs9486719	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	6q16.1	FHL5	rs9486719-G	0.802273	7E-10		1.06	[1.04-1.08]	NR [8126035] (imputed)	N
1325	chr6	97060123	97060124	rs9486719	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	6q16.1	FHL5	rs9486719-A	0.2014	2E-7		0.0413	[0.026-0.057] unit decrease	NR [8041861] (imputed)	N
1325	chr6	97060123	97060124	rs9486719	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Migraine	53,109 European ancestry cases, 230,876 European ancestry controls	NA	6q16.1	FHL5	rs9486719-?	NR	6E-21		1.091703	[1.07-1.11]	Illumina [13763073] (imputed)	N
1325	chr6	97065211	97065212	rs11759769	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine without aura	7,107 European ancestry cases, 69,427 European ancestry controls	NA	6q16.1	FHL5	rs11759769-A	0.22	2E-12		1.18	[1.13-1.24]	Affymetrix, Illumina [~ 2300000] (imputed)	N
1325	chr6	97065211	97065212	rs11759769	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine - clinic-based	5,175 European ancestry clinic-based cases, 13,972 European ancestry clinic-based controls	NA	6q16.1	FHL5	rs11759769-A	0.22	4E-7		1.16	[1.09-1.23]	Affymetrix, Illumina [~ 2300000] (imputed)	N
1325	chr6	97065211	97065212	rs11759769	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NA	6q16.1	FHL5	rs11759769-A	0.22	1E-11		1.1	[1.07-1.13]	Affymetrix, Illumina [~ 2300000] (imputed)	N
1325	chr6	97080197	97080198	rs12200560	22319020	Davies RW	2012-02-07	Circ Cardiovasc Genet	A genome-wide association study for coronary artery disease identifies a novel susceptibility locus in the major histocompatibility complex.	Coronary heart disease	7,123 European ancestry cases, 6,826 European ancestry controls	5,211 European ancestry cases, 5,821 European ancestry controls	6q16.1	FHL5	rs12200560-?	NR	6E-7		1.11	[NR]	Affymetrix [~ 5000000] (imputed)	N
1325	chr6	97093036	97093037	rs1034240	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Spatial memory	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	6q16.1	FHL5	rs1034240-C	NR	7E-6		0.10684922	[0.059-0.154] unit decrease	Illumina [> 6200000] (imputed)	N
1325	chr6	97096177	97096178	rs62412930	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6q16.1	NR	rs62412930-A	0.02613	9E-9	(HIST1H1C)	0.02021	NR unit increase	Illumina [1671387] (imputed)	N
1326	chr6	97165074	97165075	rs11755057	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6q16.1	FHL5	rs11755057-?	NR	4E-7	(alpha ketoglutarate)	0.510943	[0.31-0.71] unit increase	Affymetrix [at least 2500000] (imputed)	N
1326	chr6	97178806	97178807	rs4839695	31926482	Shen H	2020-01-11	Neuropsychopharmacology	Polygenic prediction and GWAS of depression, PTSD, and suicidal ideation/self-harm in a Peruvian cohort.	Suicidal or self-harm ideation	522 Peruvian cases, 2,882 Peruvian controls	NA	6q16.1	NR	rs4839695-G		2E-6		1.531	[NR]	NR [NR]	N
1326	chr6	97234785	97234786	rs213862	29317604	Liu D	2018-01-10	Transl Psychiatry	Beta-defensin 1, aryl hydrocarbon receptor and plasma kynurenine in major depressive disorder: metabolomics-informed genomics.	Plasma kynurenine levels in major depressive disorder	290 European ancestry individuals	NA	6q16.1	GPR63	rs213862-A	0.14	7E-6		0.51	[NR] unit decrease	Illumina [~ 7500000] (imputed)	N
1326	chr6	97237608	97237609	rs435775	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	6q16.1	GPR63	rs435775-A	0.252094	5E-10		0.0100539	[0.0069-0.0132] unit decrease	Affymetrix [12370749]	N
1327	chr6	97274873	97274874	rs9487264	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	6q16.1	NR	rs9487264-?	NR	1E-6				Affymetrix [NR]	N
1327	chr6	97342079	97342080	rs189037007	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	TRAIL levels	8,186 Finnish ancestry individuals	NA	6q16.1	NR	rs189037007-G		1E-7		0.6884	[0.44-0.94] SD units decrease	NR [10700000] (imputed)	N
1327	chr6	97345991	97345991	rs146522546	32693751	Keene KL	2020-07-22	Stroke	Genome-Wide Association Study Meta-Analysis of Stroke in 22 000 Individuals of African Descent Identifies Novel Associations With Stroke.	Stroke	3,734 African ancestry cases, 18,317 African ancestry controls	NA	6q16.1	KLHL32, NDUFA4	rs146522546-?	NR	2E-7		0.64	[1.45-1.72]	Affymetrix, Illumina [~ 16900000] (imputed)	N
1327	chr6	97374849	97374850	rs13203153	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	6q16.1		rs13203153-?	NR	8E-9				NR [~ 8900000] (imputed)	N
1327	chr6	97385974	97385975	rs17448885	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	6q16.1	NA	rs17448885-C	0.6522	3E-9		0.011	[0.0073-0.0147] unit increase	NR [~ 27400000] (imputed)	N
1327	chr6	97385974	97385975	rs17448885	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	316,772 European ancestry male individuals	NA	6q16.1	NR	rs17448885-C	0.6522	3E-9		0.011	[0.0073-0.0147] unit increase	NR [~ 27400000] (imputed)	N
1327	chr6	97385974	97385975	rs17448885	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	6q16.1	NA	rs17448885-C	0.6522	5E-9		0.0105	[0.007-0.014] unit increase	NR [~ 27400000] (imputed)	N
1328	chr6	97390462	97390463	rs35104491	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	6q16.1	Intergenic	rs35104491-A	0.1861	2E-8	(MTAG)	0.013	[0.0085-0.0175] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1328	chr6	97390462	97390463	rs35104491	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	6q16.1	Intergenic	rs35104491-A	0.1866	4E-13	(MTAG)	0.0154	[0.011-0.02] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1328	chr6	97390462	97390463	rs35104491	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6q16.1		rs35104491-A	0.1849	7E-12		0.0124	[0.0089-0.0159] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1328	chr6	97390462	97390463	rs35104491	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6q16.1	Intergenic	rs35104491-A	0.1849	9E-15	(MTAG)	0.0131	[0.0098-0.0164] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1328	chr6	97399926	97399927	rs6937950	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	6q16.1	Intergenic	rs6937950-A	0.19	6E-11	(MTAG)	0.0191	[0.013-0.025] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1328	chr6	97410535	97410536	rs17057164	28430825	Ng MCY	2017-04-21	PLoS Genet	Discovery and fine-mapping of adiposity loci using high density imputation of genome-wide association studies in individuals of African ancestry: African Ancestry Anthropometry Genetics Consortium.	Body mass index (adult)	16,559 African ancestry men, 26,193 African ancestry women	2,458 African ancestry men, 7,685 African ancestry women, 152,893 European ancestry men, 171,977 European ancestry women	6q16.1	KLHL32	rs17057164-T	0.657	6E-9	(AA)	0.04	[0.026-0.054] unit increase	Affymetrix, Illumina [17972087] (imputed)	N
1328	chr6	97410535	97410536	rs17057164	28430825	Ng MCY	2017-04-21	PLoS Genet	Discovery and fine-mapping of adiposity loci using high density imputation of genome-wide association studies in individuals of African ancestry: African Ancestry Anthropometry Genetics Consortium.	Body mass index (adult)	16,559 African ancestry men, 26,193 African ancestry women	2,458 African ancestry men, 7,685 African ancestry women, 152,893 European ancestry men, 171,977 European ancestry women	6q16.1	KLHL32	rs17057164-T	0.657	6E-9		0.04	[0.026-0.054] unit increase	Affymetrix, Illumina [17972087] (imputed)	N
1328	chr6	97410535	97410536	rs17057164	28430825	Ng MCY	2017-04-21	PLoS Genet	Discovery and fine-mapping of adiposity loci using high density imputation of genome-wide association studies in individuals of African ancestry: African Ancestry Anthropometry Genetics Consortium.	Body mass index (adult)	16,559 African ancestry men, 26,193 African ancestry women	2,458 African ancestry men, 7,685 African ancestry women, 152,893 European ancestry men, 171,977 European ancestry women	6q16.1	KLHL32	rs17057164-T	0.656	2E-7	(AA,Women)	0.044	[-0.1128-0.2008] unit increase	Affymetrix, Illumina [17972087] (imputed)	N
1328	chr6	97419597	97419598	rs974417	23583978	Monda KL	2013-04-14	Nat Genet	A meta-analysis identifies new loci associated with body mass index in individuals of African ancestry.	Body mass index	37,956 African American individuals, 1,188 Nigerian ancestry individuals	27,661 African America/Afro-Caribbean individuals, 4,607 Sub-Saharan African ancestry individuals, 123,706 European ancestry inidividuals	6q16.1	KLHL32	rs974417-C	0.85	6E-6		0.0049	[-0.00784-0.01764] unit increase	Affymetrix, Illumina [3283202] (imputed)	N
1328	chr6	97500046	97500047	rs12195230	24954895	Simino J	2014-06-19	Am J Hum Genet	Gene-age interactions in blood pressure regulation: a large-scale investigation with the CHARGE, Global BPgen, and ICBP Consortia.	Blood pressure	55,796 European ancestry individuals	43,445 European ancestry individuals, 1,849 Chinese ancestry individuals, 2,502 Malay ancestry individuals, 2,476 Asian Indian ancestry individuals, 1,855 Asian ancestry individuals	6q16.1	KLHL32	rs12195230-G	0.75	5E-7	(EA, SBP, Age 20-29)	1.79	[1.1-2.48] mmHg increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1329	chr6	97543136	97543137	rs1206133	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6q16.1	NR	rs1206133-?	NR	6E-9				Affymetrix [~ 8270000] (imputed)	N
1329	chr6	97546758	97546759	rs4839898	33128006	Timmins IR	2020-10-30	Commun Biol	Genome-wide association study of self-reported walking pace suggests beneficial effects of brisk walking on health and survival.	Walking pace	450,967 European ancestry individuals	NA	6q16.1	KLHL32	rs4839898-G	NR	2E-10		0.0130314	[0.009-0.017] unit decrease	Affymetrix [10061374] (imputed)	N
1329	chr6	97556443	97556444	rs60451608	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	6q16.1	KLHL32	rs60451608-G	0.972	1E-6	(AA)	0.09	NR unit increase	Illumina [NR] (imputed)	N
1329	chr6	97556443	97556444	rs60451608	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	6q16.1	KLHL32	rs60451608-G	0.972	2E-6	(AA)	0.369	NR unit increase	Illumina [NR] (imputed)	N
1329	chr6	97571695	97571696	rs73758115	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	6q16.1	KLHL32	rs73758115-T	0.972	1E-6	(AA)	0.091	NR unit increase	Illumina [NR] (imputed)	N
1329	chr6	97571695	97571696	rs73758115	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	6q16.1	KLHL32	rs73758115-T	0.972	2E-6	(AA)	0.372	NR unit increase	Illumina [NR] (imputed)	N
1329	chr6	97573599	97573600	rs73758117	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	6q16.1	KLHL32	rs73758117-T	0.972	1E-6	(AA)	0.091	NR unit increase	Illumina [NR] (imputed)	N
1329	chr6	97573599	97573600	rs73758117	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	6q16.1	KLHL32	rs73758117-T	0.972	2E-6	(AA)	0.372	NR unit increase	Illumina [NR] (imputed)	N
1329	chr6	97579063	97579064	rs73758118	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	6q16.1	KLHL32	rs73758118-A	0.972	1E-6	(AA)	0.091	NR unit increase	Illumina [NR] (imputed)	N
1329	chr6	97579063	97579064	rs73758118	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	6q16.1	KLHL32	rs73758118-A	0.972	1E-6	(AA)	0.373	NR unit increase	Illumina [NR] (imputed)	N
1329	chr6	97601526	97601527	rs55884448	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	6q16.1	MMS22L	rs55884448-A	0.972	1E-6	(AA)	0.092	NR unit increase	Illumina [NR] (imputed)	N
1329	chr6	97601526	97601527	rs55884448	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	6q16.1	MMS22L	rs55884448-A	0.972	2E-6	(AA)	0.378	NR unit increase	Illumina [NR] (imputed)	N
1329	chr6	97613772	97613773	rs4498364	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	6q16.1	NR	rs4498364-C	NR	2E-7		0.016	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
1329	chr6	97613772	97613773	rs4498364	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6q16.1	MMS22L	rs4498364-C	0.31810000000000005	2E-7		0.0251	[0.016-0.035] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1329	chr6	97613772	97613773	rs4498364	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6q16.1	MMS22L	rs4498364-?	NR	8E-8				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1329	chr6	97613772	97613773	rs4498364	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6q16.1	MMS22L	rs4498364-C	0.31810000000000005	9E-6	(men)	0.0288	[0.016-0.042] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1329	chr6	97613772	97613773	rs4498364	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6q16.1	MMS22L	rs4498364-C	0.31810000000000005	3E-8		0.0242	[0.016-0.033] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1329	chr6	97624736	97624737	rs60610103	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	6q16.1	MMS22L	rs60610103-G	0.973	2E-6	(AA)	0.092	NR unit increase	Illumina [NR] (imputed)	N
1329	chr6	97624736	97624737	rs60610103	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	6q16.1	MMS22L	rs60610103-G	0.973	4E-6	(AA)	0.371	NR unit increase	Illumina [NR] (imputed)	N
1329	chr6	97632916	97632917	rs148707864	32349335	Lundback V	2020-04-27	Cells	Genome-Wide Association Study of Diabetogenic Adipose Morphology in the GENetics of Adipocyte Lipolysis (GENiAL) Cohort.	Adipose morphology	894 individuals	NA	6q16.1	NR	rs148707864-G	0.0148	7E-6		140.0	[79-200] unit increase	NR [9714326] (imputed)	N
1329	chr6	97641878	97641879	rs189239081	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	6q16.1	MMS22L	rs189239081-C	0.973	2E-6	(AA)	0.093	NR unit increase	Illumina [NR] (imputed)	N
1329	chr6	97641878	97641879	rs189239081	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	6q16.1	MMS22L	rs189239081-C	0.973	4E-6	(AA)	0.378	NR unit increase	Illumina [NR] (imputed)	N
1329	chr6	97644934	97644935	rs12207304	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	6q16.1	NR	rs12207304-?	NR	9E-6		0.0077361	[0.0043-0.0112] unit decrease	Affymetrix [805426] (imputed)	N
1330	chr6	97656566	97656567	rs147373591	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6q16.1	NR	rs147373591-G	0.01045	5E-9	(MYL6)	0.1289	NR unit increase	Illumina [1671387] (imputed)	N
1330	chr6	97662241	97662242	rs73760105	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	6q16.1	MMS22L	rs73760105-T	0.974	2E-6	(AA)	0.094	NR unit increase	Illumina [NR] (imputed)	N
1330	chr6	97662241	97662242	rs73760105	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	6q16.1	MMS22L	rs73760105-T	0.974	4E-6	(AA)	0.378	NR unit increase	Illumina [NR] (imputed)	N
1330	chr6	97666921	97666922	rs79077948	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	6q16.1	MMS22L	rs79077948-T	0.974	2E-6	(AA)	0.094	NR unit increase	Illumina [NR] (imputed)	N
1330	chr6	97666921	97666922	rs79077948	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	6q16.1	MMS22L	rs79077948-T	0.974	4E-6	(AA)	0.378	NR unit increase	Illumina [NR] (imputed)	N
1330	chr6	97668012	97668013	rs59581213	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	6q16.1	MMS22L	rs59581213-G	0.974	2E-6	(AA)	0.094	NR unit increase	Illumina [NR] (imputed)	N
1330	chr6	97668012	97668013	rs59581213	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	6q16.1	MMS22L	rs59581213-G	0.974	4E-6	(AA)	0.378	NR unit increase	Illumina [NR] (imputed)	N
1330	chr6	97669712	97669713	rs6931902	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	6q16.1	NR	rs6931902-C	0.795956378938568	5E-8		0.006217737	[0.004-0.0085] unit increase	NR [NR]	N
1330	chr6	97699909	97699910	rs10457272	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	6q16.1	NR	rs10457272-C	0.754	4E-10		0.00784877	[0.0054-0.0103] unit increase	NR [9732723] (imputed)	N
1330	chr6	97702875	97702876	rs6568832	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	6q16.1	NR	rs6568832-A	0.753851	2E-10	(Conditioned on chr6:98636905)	0.018869005	[0.013-0.025] unit increase	NR [~ 10000000] (imputed)	N
1330	chr6	97715575	97715576	rs73760117	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	6q16.1	MMS22L	rs73760117-C	0.974	2E-6	(AA)	0.095	NR unit increase	Illumina [NR] (imputed)	N
1330	chr6	97729952	97729953	rs9387216	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Anxiety	at least 23,606 European ancestry cases, at least 113,351 European ancestry controls	624,615 European ancestry cases, 1,310,854 European ancestry controls	6q16.1	MMS22L	rs9387216-C	0.2316	9E-9		0.015199877	[0.0093-0.0211] unit increase	NR [9417325] (imputed)	N
1330	chr6	97737207	97737208	rs73760151	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	6q16.1	Intergenic	rs73760151-C	0.975	2E-6	(AA)	0.095	NR unit increase	Illumina [NR] (imputed)	N
1330	chr6	97749331	97749332	rs9320505	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	6q16.1		rs9320505-?	NR	1E-7				NR [~ 8900000] (imputed)	N
1330	chr6	97753222	97753223	rs13209872	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6q16.1	NR	rs13209872-?	NR	2E-12				Affymetrix [~ 8270000] (imputed)	N
1330	chr6	97753222	97753223	rs13209872	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	6q16.1	NA	rs13209872-C	0.3455	2E-16		0.0148	[0.011-0.018] unit decrease	NR [~ 27400000] (imputed)	N
1330	chr6	97764298	97764299	rs9372414	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	6q16.1		rs9372414-?	NR	5E-14				NR [~ 8900000] (imputed)	N
1331	chr6	97792734	97792735	rs12663742	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	6q16.1	NA	rs12663742-A	0.3716	4E-15		0.0137	[0.01-0.017] unit decrease	NR [~ 27400000] (imputed)	N
1331	chr6	97804398	97804399	rs74621225	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6q16.1	NR	rs74621225-?	NR	5E-6		4.553	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1332	chr6	97922183	97922184	rs200810	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	6q16.1	MMS22L	rs200810-T	0.626	7E-6	(EA)	0.014	[0.008-0.0202] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1332	chr6	97922183	97922184	rs200810	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	6q16.1	MMS22L	rs200810-T	0.624	5E-6		0.014	[0.0078-0.0196] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1332	chr6	97924992	97924993	rs149071167	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6q16.1	NR	rs149071167-G	0.01045	7E-9	(MYL6)	0.1273	NR unit increase	Illumina [1671387] (imputed)	N
1332	chr6	97946395	97946396	rs10499013	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	6q16.1	NA	rs10499013-A	0.28	5E-10		0.0125	[0.0086-0.0164] unit decrease	NR [~ 27400000] (imputed)	N
1332	chr6	97947754	97947755	rs10499014	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		6q16.1	MMS22L	rs10499014-C	0.731353	1E-10		0.0100464	[0.007-0.0131] unit increase	Affymetrix [12370749]	N
1332	chr6	97947754	97947755	rs10499014	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	6q16.1	NR	rs10499014-?	NR	1E-7		0.0092283	[0.0058-0.0126] unit decrease	Affymetrix [805426] (imputed)	N
1332	chr6	98019079	98019080	rs9320598	23785401	Leone MA	2013-06-13	PLoS One	Association of genetic markers with CSF oligoclonal bands in multiple sclerosis patients.	Multiple sclerosis (OCB status)	49 European ancestry OCB negative cases, 513 European ancestry OCB positive cases	200 European ancestry OCB negative cases, 1684 European ancestry OCB positive cases	6q16.1	MMS22L, KLHL32, C6orf167, KIAA1900	rs9320598-?	0.951	9E-7		2.17	[NR]	Illumina [504967]	N
1332	chr6	98025404	98025405	rs7773881	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6q16.1	NR	rs7773881-?	NR	9E-6		4.435	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1333	chr6	98053607	98053608	rs74704950	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	6q16.1	NR	rs74704950-?	NR	7E-7		0.0084743	[0.0051-0.0118] unit increase	Affymetrix [805426] (imputed)	N
1333	chr6	98104574	98104575	rs9489328	32755526	D'Urso S	2020-08-05	Twin Res Hum Genet	Septic Shock: A Genomewide Association Study and Polygenic Risk Score Analysis.	Septic shock	493 European ancestry cases, 2,442 European ancestry controls	NA	6q16.1	AL589740.1	rs9489328-G	0.9	1E-10		2.7	[2.41-2.99]	Illumina [7567032] (imputed)	N
1333	chr6	98104947	98104948	rs4397233	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6q16.1	NR	rs4397233-G	0.312	8E-6	(IFNalpha_CXCL10_of_Monocytes)			Illumina [5084123] (imputed)	N
1333	chr6	98160532	98160533	rs112706601	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	6q16.1	NR	rs112706601-?	NR	3E-6		0.0079946	[0.0047-0.0113] unit increase	Affymetrix [805426] (imputed)	N
1334	chr6	98178061	98178062	rs17057973	30898391	Lawrenson K	2019-03-19	Gynecol Oncol	Genome-wide association studies identify susceptibility loci for epithelial ovarian cancer in east Asian women.	Epithelial ovarian cancer	3,238 East Asian ancestry cases, 4,083 East Asian ancestry controls	NA	6q16.1		rs17057973-?	NR	8E-6	(ser_lg_lmp)	2.77		Illumina [11595112] (imputed)	N
1334	chr6	98179725	98179726	rs17057975	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6q16.1	NR	rs17057975-?	NR	3E-12				Affymetrix [~ 8270000] (imputed)	N
1334	chr6	98185966	98185966	rs199862836	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid respiratory support vs population)	495 European ancestry cases, 680,440 European ancestry controls, 102 Hispanic or Latin American cases, 94,330 Hispanic or Latin American controls, 39 Black or African American cases, 22,410 Black or African American controls	NA	6q16.1		rs199862836-?	NR	4E-6		1.4893959	[0.86-2.12] unit increase	Illumina [9842460] (imputed)	N
1334	chr6	98187290	98187291	rs56231335	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	6q16.1	NR	rs56231335-T	0.6719	7E-13		0.017295325	NR unit decrease	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
1334	chr6	98198516	98198517	rs144939408	31296530	Trendowski MR	2019-07-11	Clin Cancer Res	Clinical and Genome-Wide Analysis of Serum Platinum Levels after Cisplatin-Based Chemotherapy.	Serum platinum levels after completion of cisplatin chemotherapy	866 European ancestry individuals, 17 non-European ancestry individuals, 127 individuals	NR	6q16.1	NR	rs144939408-T	0.0106	8E-6		0.6703	[0.38-0.96] unit increase	Illumina [7305641] (imputed)	N
1334	chr6	98204208	98204209	rs9387644	29206233	Shendre A	2017-12-04	PLoS One	Genome-wide admixture and association study of subclinical atherosclerosis in the Women's Interagency HIV Study (WIHS).	Common carotid intima-media thickness	682 Black non-Hispanic HIV-positive women, 288 Black non-Hispanic HIV-negative women	NA	6q16.1	LOC101927314, MIR2113	rs9387644-C	NR	8E-6		0.01624	[NR] unit increase	Illumina [1124301]	N
1334	chr6	98204497	98204498	rs77418166	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	6q16.1	NR	rs77418166-T	NR	1E-8		5.721	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1334	chr6	98204497	98204498	rs77418166	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6q16.1	ENSG00000242486	rs77418166-T	NR	1E-10		6.453	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1334	chr6	98204497	98204498	rs77418166	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability	107,207 European ancestry individuals	NA	6q16.1	ENSG00000242486	rs77418166-?	NR	5E-8		5.462	z score increase	Affymetrix, Illumina [7357080] (imputed)	N
1334	chr6	98210878	98210879	rs4839712	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6q16.1		rs4839712-T	0.5461	4E-9	(conditional-joint)	0.0084	[0.0057-0.0111] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1334	chr6	98212182	98212183	rs13198731	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6q16.1	KLHL32	rs13198731-?	NR	7E-7	(SM 24:1)	0.17261238	[0.1-0.24] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1334	chr6	98212408	98212409	rs6569077	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6q16.1		rs6569077-T	0.3894	3E-16		0.0118	[0.0091-0.0145] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1334	chr6	98212408	98212409	rs6569077	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6q16.1	Intergenic	rs6569077-T	0.3894	2E-19	(MTAG)	0.0121	[0.0096-0.0146] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1334	chr6	98212408	98212409	rs6569077	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	6q16.1	Intergenic	rs6569077-T	0.3917	1E-9	(MTAG)	0.0143	[0.0098-0.0188] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1334	chr6	98212408	98212409	rs6569077	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	6q16.1	ENSG00000242486	rs6569077-T	NR	3E-9		0.017764233	[0.012-0.024] unit increase	Affymetrix [NR]	N
1334	chr6	98212408	98212409	rs6569077	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability (MTAG)	436,124 European ancestry individuals	NA	6q16.1	ENSG00000242486	rs6569077-?	NR	9E-10		6.121	z score increase	Affymetrix, Illumina, Perlegen [7333576] (imputed)	N
1334	chr6	98214813	98214814	rs11153822	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	6q16.1	NR	rs11153822-T	NR	1E-11		6.768	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1334	chr6	98214813	98214814	rs11153822	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6q16.1	ENSG00000242486	rs11153822-T	NR	2E-8		5.634	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1334	chr6	98224216	98224217	rs112375785	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6q16.1		rs112375785-A	0.1435	6E-19		0.0184	[0.014-0.023] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1334	chr6	98224216	98224217	rs112375785	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	6q16.1	RP11-436D23.1	rs112375785-A	NR	2E-10		0.027595606	[0.019-0.036] unit increase	Affymetrix [NR]	N
1334	chr6	98233194	98233195	rs2388148	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	6q16.1	RP11-436D23.1	rs2388148-T	0.4312	4E-12		0.0141986925	[0.01-0.018] unit increase	Affymetrix [up to 18485882] (imputed)	N
1334	chr6	98233194	98233195	rs2388148	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income	286,301 British ancestry individuals	NA	6q16.1	RP11-436D23.1	rs2388148-T	NR	1E-8		0.011448	[0.0075-0.0154] unit increase	Affymetrix [18485882] (imputed)	N
1334	chr6	98248412	98248413	rs12208753	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	6q16.1	Intergenic	rs12208753-A	0.5009	6E-20	(MTAG)	0.0151	[0.012-0.018] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1334	chr6	98248412	98248413	rs12208753	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	6q16.1	Intergenic	rs12208753-G	0.4991	2E-10		0.0144	[0.0099-0.0189] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1334	chr6	98259775	98259776	rs10457368	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	6q16.1	RP11-436D23.1	rs10457368-G	0.4382	3E-13		0.014819232	[0.011-0.019] unit increase	Affymetrix [up to 18485882] (imputed)	N
1334	chr6	98271018	98271019	rs1933717	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	6q16.1	RP11-436D23.1	rs1933717-T	NR	1E-10		0.01880283	[0.013-0.025] unit decrease	Affymetrix [NR]	N
1334	chr6	98286150	98286151	rs9387711	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	6q16.1	Intergenic	rs9387711-T	0.5466	1E-10	(MTAG)	0.0116	[0.0081-0.0151] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1334	chr6	98287328	98287329	rs6915773	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	6q16.1	RP11-436D23.1	rs6915773-A	NR	5E-11		0.019187003	[0.013-0.025] unit increase	Affymetrix [NR]	N
1334	chr6	98289394	98289395	rs75541746	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	6q16.1	RP11-436D23.1	rs75541746-A	NR	6E-11		0.029047765	[0.02-0.038] unit increase	Affymetrix [NR]	N
1334	chr6	98297831	98297832	rs1933720	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	6q16.1	NR	rs1933720-T	0.399602	6E-13		0.04621408	[0.034-0.059] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1334	chr6	98297831	98297832	rs1933720	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	6q16.1	RP11-436D23.1	rs1933720-C	0.3626	2E-19		0.019079171	[0.015-0.023] unit increase	Affymetrix [up to 18485882] (imputed)	N
1334	chr6	98297831	98297832	rs1933720	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income	286,301 British ancestry individuals	NA	6q16.1	RP11-436D23.1	rs1933720-C	NR	4E-12		0.013999	[0.01-0.018] unit increase	Affymetrix [18485882] (imputed)	N
1334	chr6	98297831	98297832	rs1933720	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	6q16.1	NR	rs1933720-T	NR	1E-15		8.024	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1334	chr6	98297831	98297832	rs1933720	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6q16.1	RP11-436D23.1	rs1933720-T	NR	9E-16		8.037	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1334	chr6	98297831	98297832	rs1933720	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	6q16.1	RP11-436D23.1	rs1933720-T	NR	2E-14		0.023376068	[0.017-0.029] unit decrease	Affymetrix [NR]	N
1335	chr6	98310290	98310291	rs9320747	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	6q16.1	NR	rs9320747-T	NR	4E-20		9.185	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1335	chr6	98310483	98310484	rs9374896	33563987	Tyrrell J	2021-02-09	Nat Commun	Genetic predictors of participation in optional components of UK Biobank.	Acceptance of an invitation to participate in a mental health questionnaire	146,074 European ancestry cases, 148,713 European ancestry controls	NA	6q16.1	NR	rs9374896-C	0.53	5E-8		0.98	[0.97, 0.98]	Affymetrix [39302896] (imputed)	N
1335	chr6	98310483	98310484	rs9374896	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	6q16.1		rs9374896-?	NR	6E-9				NR [~ 8900000] (imputed)	N
1335	chr6	98311874	98311875	rs9489945	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6q16.1	RP11-436D23.1	rs9489945-C	NR	2E-10		6.329	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1335	chr6	98312142	98312143	rs1338549	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income	286,301 British ancestry individuals	NA	6q16.1	RP11-436D23.1	rs1338549-G	NR	1E-11		0.013714	[0.0098-0.0177] unit decrease	Affymetrix [18485882] (imputed)	N
1335	chr6	98312142	98312143	rs1338549	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Sunburns	approximately 344,000 European ancestry individuals	NA	6q16.1		rs1338549-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1335	chr6	98313222	98313223	rs1933721	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	6q16.1	RP11-436D23.1	rs1933721-C	NR	2E-24		0.029944701	[0.024-0.036] unit decrease	Affymetrix [NR]	N
1335	chr6	98313222	98313223	rs1933721	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability (MTAG)	436,124 European ancestry individuals	NA	6q16.1	RP11-436D23.1	rs1933721-?	NR	4E-16		8.141	z score decrease	Affymetrix, Illumina, Perlegen [7333576] (imputed)	N
1335	chr6	98313222	98313223	rs1933721	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability	107,207 European ancestry individuals	NA	6q16.1	RP11-436D23.1	rs1933721-?	NR	1E-6		4.893	z score decrease	Affymetrix, Illumina [7357080] (imputed)	N
1335	chr6	98318225	98318226	rs6922758	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	6q16.1	NR	rs6922758-T	0.131901	2E-10		6.37	z score decrease	NR [10847151] (imputed)	N
1335	chr6	98319389	98319390	rs9372605	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	6q16.1		rs9372605-A	NR	1E-9		0.0217	[0.015-0.029] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1335	chr6	98323548	98323549	rs79245415	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6q16.1	RP11-436D23.1	rs79245415-C	NR	3E-14		7.616	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1335	chr6	98328593	98328593	rs35991591	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	6q16.1		rs35991591-GTA	NR	3E-9		0.0136	[0.0091-0.0181] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1335	chr6	98328593	98328593	rs35991591	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	6q16.1		rs35991591-GTA	NR	4E-10		0.0145	[0.01-0.019] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
1335	chr6	98328773	98328774	rs9401295	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	6q16.1	RP11-436D23.1	rs9401295-T	NR	4E-11		0.019590655	[0.014-0.025] unit increase	Affymetrix [NR]	N
1335	chr6	98330520	98330521	rs1890408	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Experiencing mood swings	373,733 European ancestry individuals	NA	6q16.1	FBXL4	rs1890408-T	0.121126	4E-8		5.51	z score decrease	NR [10847151] (imputed)	N
1335	chr6	98331133	98331134	rs9490002	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	6q16.1	NR	rs9490002-?	NR	1E-8	(left lateral orbitofrontal)			NR [9227495] (imputed)	N
1335	chr6	98331936	98331937	rs9401305	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	6q16.1		rs9401305-?	NR	8E-10				NR [~ 8900000] (imputed)	N
1335	chr6	98332858	98332859	rs9398586	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling nervous	373,121 European ancestry individuals	NA	6q16.1	FBXL4	rs9398586-A	0.132069	3E-8		5.53	z score decrease	NR [10847151] (imputed)	N
1335	chr6	98332858	98332859	rs9398586	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	6q16.1	intergenic	rs9398586-A	0.86793	1E-11		6.766	z score decrease	Illumina [18485882] (imputed)	N
1335	chr6	98333408	98333409	rs12189679	33563987	Tyrrell J	2021-02-09	Nat Commun	Genetic predictors of participation in optional components of UK Biobank.	Participation in an health questionnaire (not invited vs invited)	336,633 European ancestry cases, 114,464 European ancestry controls	NA	6q16.1	NR	rs12189679-G	0.535111	2E-12		1.006	[1.005, 1.008]	Affymetrix [39302896] (imputed)	N
1335	chr6	98333408	98333409	rs12189679	31959922	Matoba N	2020-01-20	Nat Hum Behav	GWAS of 165,084 Japanese individuals identified nine loci associated with dietary habits.	Coffee consumption	152,634 Japanese ancestry individuals	NA	6q16.1	MIR2113	rs12189679-?	NR	3E-8		0.067	[0.044-0.09] unit increase	Illumina [6108828] (imputed)	N
1335	chr6	98337902	98337903	rs6928545	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	6q16.1	NR	rs6928545-A	NR	8E-12		6.847	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1335	chr6	98338458	98338459	rs1338547	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	6q16.1	RP11-436D23.1	rs1338547-A	NR	4E-11		0.019547561	[0.014-0.025] unit increase	Affymetrix [NR]	N
1335	chr6	98344030	98344031	rs9372625	34187846	Ong JS	2021-06-29	Gut	Multitrait genetic association analysis identifies 50 new risk loci for gastro-oesophageal reflux, seven new loci for Barrett's oesophagus and provides insights into clinical heterogeneity in reflux diagnosis.	Gastroesophageal reflux disease	129,080 European ancestry cases, 473,524 European ancestry controls	462,753 cases, 1,127,474 controls	6q16.1	NR	rs9372625-G	0.62	3E-14		0.038	unit increase	NR [2324712] (imputed)	N
1335	chr6	98344030	98344031	rs9372625	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (computer use)	408,815 European ancestry individuals	NA	6q16.1	NR	rs9372625-?		6E-16		0.0183911	[0.014-0.023] unit decrease	Affymetrix [19400418] (imputed)	N
1335	chr6	98344030	98344031	rs9372625	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	6q16.1	MMS22L	rs9372625-A	0.3824	4E-8		0.013377972	[0.0086-0.0181] unit increase	Affymetrix [11515109] (imputed)	N
1335	chr6	98344030	98344031	rs9372625	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Automobile speeding propensity	404,291 European ancestry individuals	NA	6q16.1	MMS22L	rs9372625-A	0.3824	3E-8		0.012836702	[0.0083-0.0174] unit increase	Affymetrix [11514463] (imputed)	N
1335	chr6	98344030	98344031	rs9372625	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	6q16.1		rs9372625-?	NR	2E-29				NR [~ 8900000] (imputed)	N
1335	chr6	98345852	98345853	rs6906737	31263887	Adams MJ	2019-07-01	Int J Epidemiol	Factors associated with sharing e-mail information and mental health survey participation in large population cohorts.	Mental health study participation (provided email address)	224,321 British ancestry cases, 147,096 British ancestry controls	NA	6q16.1	RP11-436D23.1	rs6906737-A	NR	2E-8		0.0061197	[0.004-0.0083] unit increase	NR [16367095] (imputed)	N
1335	chr6	98345852	98345853	rs6906737	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6q16.1	RP11-436D23.1	rs6906737-A	NR	2E-20		9.271	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1335	chr6	98346632	98346633	rs1338552	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Photic sneeze reflex	32,446 European ancestry cases, 67,249 European ancestry controls	NA	6q16.1	MMS22L, POU3F2	rs1338552-?	NR	1E-17		1.092	[1.070-1.115]	Illumina [13729857] (imputed)	N
1335	chr6	98346800	98346801	rs1338554	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	6q16.1	NR	rs1338554-A	0.4975	2E-11		0.015021744	NR unit increase	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
1335	chr6	98358574	98358575	rs6924808	25601762	Wang Y	2015-01-20	Pharmacogenomics J	Pharmacodynamic genome-wide association study identifies new responsive loci for glucocorticoid intervention in asthma.	Response to inhaled glucocorticoid treatment in asthma (change in FEV1)	120 individuals	410 individuals	6q16.1	NR	rs6924808-?		7E-16				Affymetrix [266944]	N
1335	chr6	98365288	98365289	rs4839715	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	6q16.1	ENSG00000224849	rs4839715-A	0.371411884166322	2E-10		0.0035474	[NR] unit decrease	Affymetrix [> 30000000] (imputed)	N
1335	chr6	98365763	98365764	rs6920575	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	6q16.1	RP11-436D23.1	rs6920575-C	0.4041	1E-11		0.013911034	[0.0099-0.0179] unit decrease	Affymetrix [up to 18485882] (imputed)	N
1335	chr6	98365932	98365933	rs139063082	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	6q16.1	NR	rs139063082-?	NR	1E-6		0.0084	[0.005-0.0118] unit decrease	Affymetrix [805426] (imputed)	N
1335	chr6	98366734	98366735	rs12190777	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	6q16.1	NR	rs12190777-A	NR	4E-8		5.508	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1335	chr6	98378172	98378173	rs4395728	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6q16.1	Intergenic	rs4395728-T	0.526	2E-26	(MTAG)	0.0139	[0.011-0.016] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1335	chr6	98378172	98378173	rs4395728	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	6q16.1	Intergenic	rs4395728-T	0.5295	2E-19	(MTAG)	0.0207	[0.016-0.025] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1335	chr6	98379874	98379875	rs12211582	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	6q16.1	NR	rs12211582-T	NR	7E-18		8.611	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1335	chr6	98380232	98380233	rs9482117	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	6q16.1	Intergenic	rs9482117-A	0.4704	2E-13		0.021	[0.015-0.027] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
1335	chr6	98391100	98391101	rs9387925	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	6q16.1	RP11-436D23.1	rs9387925-A	NR	1E-21		0.027832102	[0.022-0.034] unit increase	Affymetrix [NR]	N
1335	chr6	98395748	98395749	rs62420383	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6q16.1	NR	rs62420383-?	NR	4E-13				Affymetrix [~ 8270000] (imputed)	N
1335	chr6	98398141	98398142	rs6928583	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6q16.1	RP11-436D23.1	rs6928583-A	NR	8E-21		9.354	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1335	chr6	98399520	98399521	rs4548017	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	6q16.1	NA	rs4548017-A	0.3936	6E-20		0.0179	[0.014-0.022] unit decrease	NR [~ 27400000] (imputed)	N
1335	chr6	98399520	98399521	rs4548017	27694959	Bonder MJ	2016-10-03	Nat Genet	The effect of host genetics on the gut microbiome.	Gut microbiota (bacterial taxa)	984 European ancestry individuals	530 European ancestry individuals	6q16.1	MMS22L	rs4548017-A	NR	4E-8	(k__Archaea|p__Euryarchaeota)	5.485985	NR Z-score increase	Illumina [8100000] (imputed)	N
1335	chr6	98399520	98399521	rs4548017	27694959	Bonder MJ	2016-10-03	Nat Genet	The effect of host genetics on the gut microbiome.	Gut microbiota (bacterial taxa)	984 European ancestry individuals	530 European ancestry individuals	6q16.1	MMS22L	rs4548017-A	NR	4E-8	(k__Archaea)	5.485985	NR Z-score increase	Illumina [8100000] (imputed)	N
1335	chr6	98399520	98399521	rs4548017	27694959	Bonder MJ	2016-10-03	Nat Genet	The effect of host genetics on the gut microbiome.	Gut microbiota (bacterial taxa)	984 European ancestry individuals	530 European ancestry individuals	6q16.1	MMS22L	rs4548017-A	NR	2E-8	(k__Archaea|p__Euryarchaeota|c__Methanobacteria|o__Methanobacteriales|f__Methanobacteriaceae)	5.6565166	NR Z-score increase	Illumina [8100000] (imputed)	N
1335	chr6	98399520	98399521	rs4548017	27694959	Bonder MJ	2016-10-03	Nat Genet	The effect of host genetics on the gut microbiome.	Gut microbiota (bacterial taxa)	984 European ancestry individuals	530 European ancestry individuals	6q16.1	MMS22L	rs4548017-A	NR	2E-8	(k__Archaea|p__Euryarchaeota|c__Methanobacteria|o__Methanobacteriales)	5.6565166	NR Z-score increase	Illumina [8100000] (imputed)	N
1335	chr6	98399520	98399521	rs4548017	27694959	Bonder MJ	2016-10-03	Nat Genet	The effect of host genetics on the gut microbiome.	Gut microbiota (bacterial taxa)	984 European ancestry individuals	530 European ancestry individuals	6q16.1	MMS22L	rs4548017-A	NR	2E-8	(k__Archaea|p__Euryarchaeota|c__Methanobacteria)	5.6565166	NR Z-score increase	Illumina [8100000] (imputed)	N
1335	chr6	98404242	98404243	rs62420387	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6q16.1		rs62420387-T	0.075	6E-12		0.0184	[0.013-0.024] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1335	chr6	98411630	98411631	rs6905544	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	6q16.1	NR	rs6905544-?		9E-18		0.0189935	[0.015-0.023] unit decrease	Affymetrix [19400418] (imputed)	N
1335	chr6	98411630	98411631	rs6905544	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	6q16.1	NR	rs6905544-A	0.399168	8E-15		0.0166444	[0.012-0.021] unit decrease	NR [NR]	N
1335	chr6	98415904	98415905	rs9375031	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	6q16.1	RP11-436D23.1	rs9375031-?	NR	4E-15		0.015950212	[0.012-0.02] unit decrease	NR [7306098]	N
1335	chr6	98421720	98421721	rs6938973	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Sex hormone-binding globulin levels	389,354 European ancestry individuals	NA	6q16.1		rs6938973-C	0.6	2E-6		0.009	nmol/L decrease	NR [NR] (imputed)	N
1335	chr6	98421720	98421721	rs6938973	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	6q16.1		rs6938973-C	0.6	2E-18				NR [NR] (imputed)	N
1335	chr6	98421720	98421721	rs6938973	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	High density lipoprotein cholesterol levels	392,965 European ancestry individuals	NA	6q16.1		rs6938973-C	0.6	2E-7		0.009	mmol/L decrease	NR [NR] (imputed)	N
1335	chr6	98421720	98421721	rs6938973	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	6q16.1		rs6938973-C	0.6	7E-26		0.016	% increase	NR [NR] (imputed)	N
1335	chr6	98421720	98421721	rs6938973	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		6q16.1	MMS22L	rs6938973-T	0.398676	4E-17		0.0118066	[0.0091-0.0146] unit decrease	Affymetrix [12370749]	N
1335	chr6	98421720	98421721	rs6938973	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6q16.1	NR	rs6938973-?	NR	3E-20				Affymetrix [~ 8270000] (imputed)	N
1335	chr6	98421720	98421721	rs6938973	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	6q16.1		rs6938973-?	NR	2E-20				NR [~ 8900000] (imputed)	N
1335	chr6	98421870	98421871	rs397885265	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	6q16.1		rs397885265-A	NR	2E-9		0.0127	[0.0086-0.0168] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1335	chr6	98421870	98421871	rs397885265	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	6q16.1		rs397885265-A	NR	6E-14		0.0185	[0.014-0.023] unit increase	Affymetrix, Illumina [20529698] (imputed)	N
1335	chr6	98421870	98421871	rs397885265	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	6q16.1		rs397885265-A	NR	3E-15		0.0189	[0.014-0.024] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1335	chr6	98421990	98421991	rs4587178	33230199	Okada D	2020-11-23	J Hum Genet	Genome-wide association study of individual differences of human lymphocyte profiles using large-scale cytometry data.	T cell lymphocyte profile difference	298 individuals	NA	6q16.1	NR	rs4587178-?	NR	2E-8			[NR]	NR [1665663]	N
1335	chr6	98421990	98421991	rs4587178	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	6q16.1	RP11-436D23.1	rs4587178-C	0.3846	4E-14		0.015650688	[0.012-0.02] unit decrease	Affymetrix [up to 18485882] (imputed)	N
1335	chr6	98421990	98421991	rs4587178	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income	286,301 British ancestry individuals	NA	6q16.1	RP11-436D23.1	rs4587178-C	NR	5E-11		0.013296	[0.0093-0.0173] unit decrease	Affymetrix [18485882] (imputed)	N
1335	chr6	98421990	98421991	rs4587178	31263887	Adams MJ	2019-07-01	Int J Epidemiol	Factors associated with sharing e-mail information and mental health survey participation in large population cohorts.	Mental health study participation (provided email address)	224,321 British ancestry cases, 147,096 British ancestry controls	NA	6q16.1	RP11-436D23.1	rs4587178-C	NR	1E-8		0.0063156	[0.0041-0.0085] unit decrease	NR [16367095] (imputed)	N
1335	chr6	98421990	98421991	rs4587178	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	6q16.1	NR	rs4587178-T	NR	1E-15		7.981	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1335	chr6	98421990	98421991	rs4587178	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6q16.1	RP11-436D23.1	rs4587178-T	NR	9E-17		8.321	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1335	chr6	98421990	98421991	rs4587178	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	6q16.1	RP11-436D23.1	rs4587178-T	NR	8E-14		0.023529667	[0.017-0.03] unit increase	Affymetrix [NR]	N
1335	chr6	98423207	98423208	rs9387963	31409800	Pazoki R	2019-08-13	Nat Commun	GWAS for urinary sodium and potassium excretion highlights pathways shared with cardiovascular traits.	Urinary sodium excretion	446,237 European ancestry individuals	7,612 African ancestry individuals, 10,095 South Asian ancestry individuals	6q16.1	FGF21	rs9387963-G	0.442994	5E-11	(EA)	0.00819859	[0.0058-0.0106] unit decrease	Affymetrix [~ 8800000] (imputed)	N
1335	chr6	98429336	98429337	rs9320823	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	6q16.1	NR	rs9320823-T	0.3979	5E-20		0.023204798	[0.018-0.028] unit decrease	Affymetrix [10549349] (imputed)	N
1335	chr6	98429336	98429337	rs9320823	31263887	Adams MJ	2019-07-01	Int J Epidemiol	Factors associated with sharing e-mail information and mental health survey participation in large population cohorts.	Mental health study participation (provided email address)	224,321 British ancestry cases, 147,096 British ancestry controls	NA	6q16.1	RP11-436D23.1	rs9320823-C	NR	3E-10		0.0069326	[0.0048-0.0091] unit decrease	NR [16367095] (imputed)	N
1335	chr6	98429336	98429337	rs9320823	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	6q16.1	NR	rs9320823-?	NR	2E-9		0.12905	[0.087-0.171] unit increase	Affymetrix [7794483] (imputed)	N
1335	chr6	98429336	98429337	rs9320823	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	6q16.1	NR	rs9320823-?	NR	1E-8	(male)	0.15211	[0.1-0.2] unit increase	Affymetrix [7794483] (imputed)	N
1335	chr6	98429336	98429337	rs9320823	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	6q16.1	NA	rs9320823-T	0.4118	2E-21		0.0165	[0.013-0.02] unit decrease	NR [~ 27400000] (imputed)	N
1335	chr6	98429336	98429337	rs9320823	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	6q16.1	MMS22L	rs9320823-T	0.3981	1E-8		0.002	[0.0014-0.0026] unit increase	Affymetrix [15275733] (imputed)	N
1335	chr6	98432302	98432302	rs59732267	31263887	Adams MJ	2019-07-01	Int J Epidemiol	Factors associated with sharing e-mail information and mental health survey participation in large population cohorts.	Mental health study participation (completed survey)	122,647 British ancestry cases, 248,781 British ancestry controls	NA	6q16.1	RP11-436D23.1	rs59732267-CA	0.52	3E-8		0.0062083	[0.004-0.0084] unit decrease	NR [16367095] (imputed)	N
1336	chr6	98435124	98435125	rs10872224	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income	286,301 British ancestry individuals	NA	6q16.1	RP11-436D23.1	rs10872224-T	NR	1E-17		0.017196	[0.013-0.021] unit decrease	Affymetrix [18485882] (imputed)	N
1336	chr6	98435124	98435125	rs10872224	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	316,772 European ancestry male individuals	NA	6q16.1	NR	rs10872224-T	0.5912	6E-11		0.0119	[0.0084-0.0154] unit increase	NR [~ 27400000] (imputed)	N
1336	chr6	98435124	98435125	rs10872224	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6q16.1	RP11-436D23.1	rs10872224-T	NR	3E-27		10.815	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1336	chr6	98445007	98445008	rs4524616	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	6q16.1	RP11-436D23.1	rs4524616-A	0.4384	3E-29		0.02283555	[0.019-0.027] unit decrease	Affymetrix [up to 18485882] (imputed)	N
1336	chr6	98452679	98452680	rs9401452	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	6q16.1	NR	rs9401452-T	NR	2E-29		11.254	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1336	chr6	98457594	98457595	rs6916891	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Neuroticism	274,107 British ancestry individuals	NA	6q16.1	NR	rs6916891-T	0.1176	3E-8		0.01064	[0.0069-0.0144] unit increase	NR [8968716] (imputed)	N
1336	chr6	98457594	98457595	rs6916891	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	6q16.1		rs6916891-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1336	chr6	98462500	98462501	rs12529874	23362303	Wu JH	2013-01-29	Circ Cardiovasc Genet	Genome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortium.	Oleic acid (18:1n-9) levels	8,961 European ancestry individuals		6q16.1	C6orf167	rs12529874-A	NR	3E-7		0.4799	unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1336	chr6	98463074	98463075	rs7753033	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6q16.1	POU3F2	rs7753033-?	NR	3E-6	(TAG 54:5)	3.6749928	[2.14-5.21] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1336	chr6	98464607	98464608	rs17813294	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	6q16.1	NR	rs17813294-C	NR	1E-17		8.528	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1336	chr6	98470232	98470233	rs17813462	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	6q16.1	NR	rs17813462-?	NR	8E-6		0.0077658	[0.0044-0.0112] unit decrease	Affymetrix [805426] (imputed)	N
1336	chr6	98495951	98495952	rs2505059	23648065	Low SK	2013-05-04	Cancer Sci	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (all anthracycline-based drugs)	184 Japanese ancestry cases, 459 Japanese ancestry controls	NA	6q16.1	MIR2113	rs2505059-G	0.398	5E-6	(Allelic model)	1.765	[1.383-2.252]	Illumina [733202]	N
1336	chr6	98508086	98508087	rs28792186	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (college completion)	280,007 European ancestry individuals	NA	6q16.1	NR	rs28792186-?	0.390499999999999	1E-11		1.0419948	[NR]	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
1336	chr6	98512157	98512158	rs9490443	31168069	Ward J	2019-06-05	Mol Psychiatry	The genomic basis of mood instability: identification of 46 loci in 363,705 UK Biobank participants, genetic correlation with psychiatric disorders, and association with gene expression and function.	Mood instability	157,039 European ancestry cases, 206,666 European ancestry controls	NA	6q16.1	RP11-436d23.1	rs9490443-?	NR	1E-8		0.00985411	[0.0065-0.0133] unit decrease	Affymetrix [NR] (imputed)	N
1336	chr6	98520525	98520526	rs2503776	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income	286,301 British ancestry individuals	NA	6q16.1	RP11-436D23.1	rs2503776-T	NR	1E-11		0.013702	[0.0097-0.0177] unit decrease	Affymetrix [18485882] (imputed)	N
1336	chr6	98521599	98521600	rs2503775	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	6q16.1	NR	rs2503775-G	0.870340000447646	5E-9		0.016387776	[0.011-0.022] unit decrease	NR [NR]	N
1336	chr6	98521599	98521600	rs2503775	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	6q16.1	NR	rs2503775-A	NR	8E-12		6.837	z score increase	Affymetrix [10847151] (imputed)	N
1336	chr6	98521599	98521600	rs2503775	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	6q16.1	FBXL4	rs2503775-A	0.131131	1E-10		6.42	z score increase	NR [10847151] (imputed)	N
1336	chr6	98521599	98521600	rs2503775	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Experiencing mood swings	373,733 European ancestry individuals	NA	6q16.1	NR	rs2503775-A	0.131131	4E-8		5.48	z score increase	NR [10847151] (imputed)	N
1336	chr6	98521599	98521600	rs2503775	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	6q16.1	intergenic	rs2503775-A	0.13112999999999997	2E-11		6.748	z score increase	Illumina [18485882] (imputed)	N
1336	chr6	98532426	98532427	rs76112426	32920024	Sanna M	2020-09-10	J Invest Dermatol	Looking for Sunshine: Genetic Predisposition to Sun-Seeking in 265,000 Individuals of European Ancestry.	Sun-seeking behavior	261,915 European ancestry individuals	NA	6q16.1	MIR2113	rs76112426-T		2E-11				Affymetrix, Illumina [8385325] (imputed)	N
1336	chr6	98534494	98534495	rs9401560	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	6q16.1	NR	rs9401560-C	NR	4E-8		5.501	z score decrease	Affymetrix [10847151] (imputed)	N
1336	chr6	98537133	98537134	rs7773141	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	6q16.1	RP11-436D23.1	rs7773141-A	0.4951	3E-25		0.021011919	[0.017-0.025] unit increase	Affymetrix [up to 18485882] (imputed)	N
1336	chr6	98537133	98537134	rs7773141	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6q16.1	RP11-436D23.1	rs7773141-A	NR	2E-14		7.626	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1336	chr6	98537133	98537134	rs7773141	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	6q16.1	RP11-436D23.1	rs7773141-A	NR	1E-22		0.02854159	[0.023-0.034] unit increase	Affymetrix [NR]	N
1336	chr6	98537992	98537993	rs9490512	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6q16.1		rs9490512-A	0.4496	4E-22		0.0136	[0.011-0.016] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1336	chr6	98539518	98539519	rs901630	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	6q16.1	NA	rs901630-T	0.411	7E-12		0.0119	[0.0086-0.0152] unit decrease	NR [~ 27400000] (imputed)	N
1336	chr6	98539518	98539519	rs901630	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	6q16.1	NA	rs901630-T	0.4135	2E-21		0.0157	[0.012-0.019] unit decrease	NR [~ 27400000] (imputed)	N
1336	chr6	98539518	98539519	rs901630	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	6q16.1	NR	rs901630-C	NR	1E-25		0.017	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
1336	chr6	98539518	98539519	rs901630	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	6q16.1	RP11-436D23.1	rs901630-T	NR	1E-28		0.03324052	[0.027-0.039] unit increase	Affymetrix [NR]	N
1336	chr6	98540144	98540145	rs79690157	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	6q16.1	RP11-436D23.1	rs79690157-A	0.1372	4E-11		0.019654555	[0.014-0.025] unit increase	Affymetrix [up to 18485882] (imputed)	N
1336	chr6	98540144	98540145	rs79690157	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	6q16.1	RP11-436D23.1	rs79690157-A	NR	7E-13		0.03244742	[0.024-0.041] unit increase	Affymetrix [NR]	N
1336	chr6	98546546	98546547	rs35099767	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	6q16.1	Intergenic	rs35099767-G	0.6199	5E-9		0.0118	[0.0079-0.0157] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1336	chr6	98549800	98549801	rs9401593	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	6q16.1		rs9401593-A	0.4963	1E-20		99.57901	z score increase	NR [6814003]	N
1336	chr6	98549800	98549801	rs9401593	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 2)	19,670 European ancestry individuals	NA	6q16.1		rs9401593-?	NR	7E-11				NR [9705931] (imputed)	N
1336	chr6	98549800	98549801	rs9401593	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs Tourette's syndrome and other tic disorders (ordinary least squares (OLS))	40,675 schizophrenia cases, 4,819 Tourette's syndrome cases	NA	6q16.1		rs9401593-?	NR	8E-11		0.0239	NR unit increase	NR [4502103] (imputed)	N
1336	chr6	98549800	98549801	rs9401593	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	6q16.1	RP11-436D23.1	rs9401593-C	0.4823	1E-39		0.026672537	[0.023-0.031] unit increase	Affymetrix [up to 18485882] (imputed)	N
1336	chr6	98549800	98549801	rs9401593	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	6q16.1	Intergenic	rs9401593-A	0.5124	5E-55	(MTAG)	0.0358	[0.031-0.04] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1336	chr6	98549800	98549801	rs9401593	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	6q16.1	NR	rs9401593-A	0.5157	4E-28		0.024470737	NR unit decrease	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
1336	chr6	98550288	98550289	rs1906252	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	6q16.1		rs1906252-A	NR	1E-10		0.0137	[0.0096-0.0178] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
1336	chr6	98550288	98550289	rs1906252	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Autism spectrum disorder vs Tourette's syndrome and other tic disorders (ordinary least squares (OLS))	18,381 autism spectrum disorder cases, 4,819 Tourette's syndrome cases	NA	6q16.1		rs1906252-?	NR	2E-11		0.0213	NR unit decrease	NR [6126055] (imputed)	N
1336	chr6	98550288	98550289	rs1906252	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Anorexia nervosa vs Tourette's syndrome and other tic disorders (ordinary least squares (OLS))	16,992 anorexia nervosa cases, 4,819 Tourette's syndrome cases	NA	6q16.1		rs1906252-?	NR	7E-11		0.0236	NR unit decrease	NR [5508374] (imputed)	N
1336	chr6	98550288	98550289	rs1906252	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	6q16.1	NR	rs1906252-C	0.493042	4E-26		0.06730696	[0.055-0.08] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1336	chr6	98550288	98550289	rs1906252	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Cognitive traits (MTAG)	331,679 British ancestry individuals	NA	6q16.1		rs1906252-?	NR	2E-10				NR [7857346] (imputed)	N
1336	chr6	98550288	98550289	rs1906252	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	6q16.1	NA	rs1906252-?		2E-15				Affymetrix, Illumina [NR] (imputed)	N
1336	chr6	98550288	98550289	rs1906252	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income	286,301 British ancestry individuals	NA	6q16.1	RP11-436D23.1	rs1906252-A	NR	1E-17		0.017284	[0.013-0.021] unit increase	Affymetrix [18485882] (imputed)	N
1336	chr6	98550288	98550289	rs1906252	30818990	Yu D	2019-03-01	Am J Psychiatry	Interrogating the Genetic Determinants of Tourette's Syndrome and Other Tic Disorders Through Genome-Wide Association Studies.	Tourette syndrome	4,271 European ancestry cases, 548 European ancestry cases from 207 families, 9,488 European ancestry controls	706 Icelandic ancestry cases, 6,068 Icelandic ancestry controls	6q16.1	MIR2113	rs1906252-C	0.5086999999999999	3E-7		1.1348494		Illumina [8265319] (imputed)	N
1336	chr6	98550288	98550289	rs1906252	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	6q16.1	Intergenic	rs1906252-A	0.4873	4E-27		0.0307	[0.025-0.036] unit increase	Affymetrix, Illumina [10100000] (imputed)	N
1336	chr6	98550288	98550289	rs1906252	29970889	Day FR	2018-07-03	Nat Commun	Elucidating the genetic basis of social interaction and isolation.	Regular attendance at a pub or social club	124,047 European ancestry cases, 328,255 European ancestry controls	NA	6q16.1	MIR2113	rs1906252-C	0.515822	8E-9		0.00528399	[0.0035-0.0071] unit increase	NR [NR] (imputed)	N
1336	chr6	98550288	98550289	rs1906252	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	6q16.1	NR	rs1906252-A	NR	7E-31		11.549	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1336	chr6	98550288	98550289	rs1906252	27046643	Davies G	2016-04-05	Mol Psychiatry	Genome-wide association study of cognitive functions and educational attainment in UK Biobank (N=112 151).	Educational attainment	111,114 European ancestry individuals	NA	6q16.1	Intergenic	rs1906252-?	NR	1E-9		0.0261309	[NR] unit increase	Affymetrix [~ 17300000] (imputed)	N
1336	chr6	98553893	98553894	rs1487441	31263887	Adams MJ	2019-07-01	Int J Epidemiol	Factors associated with sharing e-mail information and mental health survey participation in large population cohorts.	Mental health study participation (provided email address)	224,321 British ancestry cases, 147,096 British ancestry controls	NA	6q16.1	RP11-436D23.1	rs1487441-A	0.49	1E-11		0.0073771	[0.0053-0.0095] unit increase	NR [16367095] (imputed)	N
1336	chr6	98553893	98553894	rs1487441	27329760	Hou L	2016-06-21	Hum Mol Genet	Genome-wide association study of 40,000 individuals identifies two novel loci associated with bipolar disorder.	Bipolar disorder	7,647 European ancestry cases, 27,303 European ancestry controls	2,137 European ancestry cases, 3,168 European ancestry controls	6q16.1	POU3F2, MIR2113	rs1487441-G	0.51	3E-8		1.12	[1.08-1.15]	Affymetrix, Illumina [9692718] (imputed)	N
1336	chr6	98553893	98553894	rs1487441	25201988	Rietveld CA	2014-09-08	Proc Natl Acad Sci U S A	Common genetic variants associated with cognitive performance identified using the proxy-phenotype method.	Educational attainment	106,736 European ancestry individuals	NA	6q16.1	POU3F2	rs1487441-A	0.473	2E-9		0.026	[NR] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1336	chr6	98555271	98555272	rs9375188	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	6q16.1		rs9375188-T	0.49	7E-56		15.75	z score increase	Affymetrix [9061022] (imputed)	N
1336	chr6	98555271	98555272	rs9375188	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	6q16.1	CALCRL, TFPI	rs9375188-?		3E-14				NR [7428630] (imputed)	N
1336	chr6	98555271	98555272	rs9375188	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6q16.1		rs9375188-T	0.4847	9E-52		0.0212	[0.018-0.024] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1336	chr6	98555271	98555272	rs9375188	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6q16.1	Intergenic	rs9375188-T	0.4847	1E-68	(MTAG)	0.0229	[0.02-0.025] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1336	chr6	98555543	98555544	rs754177720	33287642	Said MA	2020-12-08	J Am Heart Assoc	Associations of Observational and Genetically Determined Caffeine Intake With Coronary Artery Disease and Diabetes Mellitus.	Caffeine consumption from coffee or tea	362,316 European ancestry individuals	NA	6q16.1	POU3F2	rs754177720-CA	0.479652	4E-9		0.01384	[0.0092-0.0185] unit decrease	Affymetrix [19400838] (imputed)	N
1336	chr6	98557731	98557732	rs56081191	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	6q16.1	RP11-436D23.1	rs56081191-A	0.07338	2E-9		0.02290169	[0.015-0.03] unit increase	Affymetrix [up to 18485882] (imputed)	N
1336	chr6	98557731	98557732	rs56081191	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6q16.1	NR	rs56081191-?	NR	2E-11				Affymetrix [~ 8270000] (imputed)	N
1336	chr6	98557731	98557732	rs56081191	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	6q16.1	POU3F2	rs56081191-A	0.078	4E-8		0.02639789	[0.017-0.036] unit increase	Affymetrix [~ 11515000] (imputed)	N
1336	chr6	98557731	98557732	rs56081191	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	6q16.1	NR	rs56081191-A	0.0727	4E-9		0.027545052	NR unit increase	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
1336	chr6	98560825	98560826	rs1906251	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Coffee consumption	335,909 European ancestry individuals	39,924 European ancestry individuals	6q16.1	MIR2113	rs1906251-A	0.643	2E-6		0.0073	[0.0044-0.0102] unit increase	Affymetrix [~ 7740000] (imputed)	N
1336	chr6	98565210	98565211	rs1487445	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	6q16.1		rs1487445-T	0.49	3E-19		8.98	z score increase	Affymetrix [9061022] (imputed)	N
1336	chr6	98565210	98565211	rs1487445	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	6q16.1	NR	rs1487445-T	0.4894	3E-17				NR [9056863] (imputed)	N
1336	chr6	98565210	98565211	rs1487445	34002096	Mullins N	2021-05-17	Nat Genet	Genome-wide association study of more than 40,000 bipolar disorder cases provides new insights into the underlying biology.	Bipolar disorder	41,917 European ancestry cases, 371,549 European ancestry controls	NA	6q16.1	POU3F2	rs1487445-C	0.513	1E-15		0.92849	[0.91-0.95]	Affymetrix, Illumina [7549318] (imputed)	N
1336	chr6	98565210	98565211	rs1487445	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	6q16.1	Intergenic	rs1487445-T	0.4718	9E-52	(MTAG)	0.0271	[0.024-0.031] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1336	chr6	98565210	98565211	rs1487445	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	6q16.1	Intergenic	rs1487445-T	0.4715	6E-71	(MTAG)	0.0294	[0.026-0.033] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1336	chr6	98565210	98565211	rs1487445	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	6q16.1	Intergenic	rs1487445-C	0.5285	7E-31		0.0262	[0.022-0.031] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1336	chr6	98565210	98565211	rs1487445	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6q16.1		rs1487445-T	0.4769	3E-45	(conditional-joint)	0.02	[0.017-0.023] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1337	chr6	98566506	98566507	rs77910749	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	6q16.1		rs77910749-C	NR	2E-9		0.0124	[0.0083-0.0165] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
1337	chr6	98572119	98572120	rs10457441	25644384	Davies G	2015-02-03	Mol Psychiatry	Genetic contributions to variation in general cognitive function: a meta-analysis of genome-wide association studies in the CHARGE consortium (N=53949).	Cognitive function	51,719 European ancestry individuals, 1,473 Erasmus Rucphen (founder/genetic isolate) individuals, 327 Korculan (founder/genetic isolate) individuals, 430 Orcadian (founder/genetic isolate) individuals	NA	6q16.1	intergenic	rs10457441-?	NR	4E-9		0.0324	[0.022-0.043] unit decrease	Affymetrix, Illumina [2478500] (imputed)	N
1337	chr6	98574559	98574560	rs968050	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	6q16.1	POU3F2	rs968050-C	0.51762	1E-12		0.0135416	[0.0098-0.0173] unit decrease	Affymetrix [NR] (imputed)	N
1337	chr6	98574559	98574560	rs968050	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	6q16.1	NR	rs968050-T	0.483	2E-11		0.00884588	[0.0063-0.0114] unit increase	NR [~ 9732723] (imputed)	N
1337	chr6	98576222	98576223	rs12202969	34002096	Mullins N	2021-05-17	Nat Genet	Genome-wide association study of more than 40,000 bipolar disorder cases provides new insights into the underlying biology.	Bipolar I disorder	25,060 European ancestry cases, 449,978 European ancestry controls	NA	6q16.1	NR	rs12202969-G	0.515	1E-12		0.92146	[0.9-0.94]	Affymetrix, Illumina [7549318] (imputed)	N
1337	chr6	98576222	98576223	rs12202969	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	6q16.1	POU3F2	rs12202969-A	0.483	1E-11		0.008	[0.0056-0.0104] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
1337	chr6	98576222	98576223	rs12202969	24618891	Muhleisen TW	2014-03-11	Nat Commun	Genome-wide association study reveals two new risk loci for bipolar disorder.	Bipolar disorder	9,747 European ancestry cases, 14,278 European ancestry controls	NA	6q16.1	POU3F2, MIR2113	rs12202969-A	NR	1E-8		1.12	[NR]	Illumina [2267487] (imputed)	N
1337	chr6	98578214	98578215	rs6931604	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	6q16.1	POU3F2	rs6931604-C	0.398855	6E-9		0.00832756	[0.0055-0.0111] unit decrease	Affymetrix [12370749]	N
1337	chr6	98578214	98578215	rs6931604	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	6q16.1	NR	rs6931604-C		3E-13		0.08	[0.06-0.1] unit increase	NR [NR]	N
1337	chr6	98578214	98578215	rs6931604	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	6q16.1	RP11-436D23.1	rs6931604-T	0.4019	3E-18		0.017930191	[0.014-0.022] unit increase	Affymetrix [up to 18485882] (imputed)	N
1337	chr6	98578214	98578215	rs6931604	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income	286,301 British ancestry individuals	NA	6q16.1	RP11-436D23.1	rs6931604-T	NR	2E-13		0.015038	[0.011-0.019] unit increase	Affymetrix [18485882] (imputed)	N
1337	chr6	98578214	98578215	rs6931604	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	6q16.1	NR	rs6931604-T	NR	8E-18		8.606	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1337	chr6	98578214	98578215	rs6931604	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6q16.1	RP11-436D23.1	rs6931604-T	NR	1E-16		8.266	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1337	chr6	98578214	98578215	rs6931604	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	6q16.1	RP11-436D23.1	rs6931604-T	NR	4E-17		0.026270688	[0.02-0.032] unit increase	Affymetrix [NR]	N
1337	chr6	98582899	98582900	rs12206087	29520040	Coleman JRI	2018-03-08	Mol Psychiatry	Biological annotation of genetic loci associated with intelligence in a meta-analysis of 87,740 individuals.	Extremely high intelligence	1,247 European ancestry cases, 86,493 European ancestry controls	NA	6q16.1	NR	rs12206087-A	0.504	1E-11		6.8	NR z score increase increase	Illumina [up to 12595966] (imputed)	N
1337	chr6	98582899	98582900	rs12206087	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	6q16.1	RP11-436D23.1	rs12206087-A	NR	7E-39		0.038085584	[0.032-0.044] unit increase	Affymetrix [NR]	N
1337	chr6	98582899	98582900	rs12206087	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability	107,207 European ancestry individuals	NA	6q16.1	RP11-436D23.1	rs12206087-?	NR	2E-11		6.695	z score increase	Affymetrix, Illumina [7357080] (imputed)	N
1337	chr6	98583487	98583488	rs72934503	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large HDL	115,082 European ancestry individuals	NA	6q16.1		rs72934503-A	0.548611	2E-11		0.0256906	[0.018-0.033] unit decrease	NR [11722792] (imputed)	N
1337	chr6	98583487	98583488	rs72934503	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	6q16.1		rs72934503-A	0.548611	8E-11		0.0241374	[0.017-0.031] unit decrease	NR [11722792] (imputed)	N
1337	chr6	98583487	98583488	rs72934503	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	6q16.1		rs72934503-A	0.548598	5E-10		0.0241347	[0.017-0.032] unit decrease	NR [11722792] (imputed)	N
1337	chr6	98583487	98583488	rs72934503	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large HDL	115,082 European ancestry individuals	NA	6q16.1		rs72934503-A	0.548611	7E-12		0.0261248	[0.019-0.034] unit decrease	NR [11722792] (imputed)	N
1337	chr6	98583487	98583488	rs72934503	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large HDL	115,082 European ancestry individuals	NA	6q16.1		rs72934503-A	0.548611	2E-10		0.0237715	[0.016-0.031] unit decrease	NR [11722792] (imputed)	N
1337	chr6	98583487	98583488	rs72934503	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	6q16.1		rs72934503-A	0.548598	4E-11		0.0247647	[0.017-0.032] unit increase	NR [11722792] (imputed)	N
1337	chr6	98583487	98583488	rs72934503	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	6q16.1		rs72934503-A	0.548611	4E-8		0.0206614	[0.013-0.028] unit decrease	NR [11722792] (imputed)	N
1337	chr6	98583487	98583488	rs72934503	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	6q16.1		rs72934503-A	0.548611	6E-9		0.0229136	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
1337	chr6	98583487	98583488	rs72934503	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	6q16.1		rs72934503-A	0.548611	1E-8		0.0225346	[0.015-0.03] unit decrease	NR [11722792] (imputed)	N
1337	chr6	98583487	98583488	rs72934503	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	6q16.1		rs72934503-A	0.548611	2E-11		0.0248027	[0.018-0.032] unit decrease	NR [11722792] (imputed)	N
1337	chr6	98583487	98583488	rs72934503	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large HDL particles	115,082 European ancestry individuals	NA	6q16.1		rs72934503-A	0.548611	6E-11		0.0249271	[0.017-0.032] unit decrease	NR [11722792] (imputed)	N
1337	chr6	98583487	98583488	rs72934503	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	6q16.1		rs72934503-A	0.548611	7E-11		0.0242059	[0.017-0.031] unit decrease	NR [11722792] (imputed)	N
1337	chr6	98583487	98583488	rs72934503	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	6q16.1		rs72934503-A	0.548611	7E-11		0.0247432	[0.017-0.032] unit decrease	NR [11722792] (imputed)	N
1337	chr6	98583487	98583488	rs72934503	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	6q16.1		rs72934503-A	0.548611	4E-10		0.023353	[0.016-0.031] unit decrease	NR [11722792] (imputed)	N
1337	chr6	98583487	98583488	rs72934503	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	6q16.1		rs72934503-A	0.548611	1E-10		0.0245002	[0.017-0.032] unit decrease	NR [11722792] (imputed)	N
1337	chr6	98583487	98583488	rs72934503	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	6q16.1		rs72934503-A	0.548611	2E-10		0.0237831	[0.016-0.031] unit decrease	NR [11722792] (imputed)	N
1337	chr6	98583487	98583488	rs72934503	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	6q16.1		rs72934503-A	0.548611	2E-11		0.0251705	[0.018-0.033] unit decrease	NR [11722792] (imputed)	N
1337	chr6	98583487	98583488	rs72934503	30804558	Grove J	2019-02-25	Nat Genet	Identification of common genetic risk variants for autism spectrum disorder.	Autism spectrum disorder	18,381 European ancestry cases, 27,969 European ancestry controls	2,119 European ancestry cases, 142,379 European ancestry controls	6q16.1	Intergenic	rs72934503-G	0.463	2E-7		1.0718113	[NR]	Illumina [9112387] (imputed)	N
1337	chr6	98584712	98584713	rs201168005	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	6q16.1		rs201168005-A	0.49	2E-33		12.06	z score increase	Affymetrix [9061022] (imputed)	N
1337	chr6	98584712	98584713	rs201168005	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	6q16.1	NR	rs201168005-A	0.4896	1E-17				NR [9056863] (imputed)	N
1337	chr6	98584719	98584720	rs368928614	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	6q16.1	NR	rs368928614-?		3E-12				NR [7428630] (imputed)	N
1337	chr6	98584732	98584733	rs9320913	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Bipolar disorder (MTAG)	65,682 individuals	NA	6q16.1	NR	rs9320913-?		1E-8				NR [520857]	N
1337	chr6	98584732	98584733	rs9320913	28530673	Sniekers S	2017-05-22	Nat Genet	Genome-wide association meta-analysis of 78,308 individuals identifies new loci and genes influencing human intelligence.	Intelligence	up to 58,799 European ancestry adults, up to 19,509 European ancestry children	NA	6q16.1	MIR2113, POU3F2	rs9320913-A	0.4836	9E-9	(Adults)	5.751	z score increase	Affymetrix, Illumina [12104294] (imputed)	N
1337	chr6	98584732	98584733	rs9320913	28530673	Sniekers S	2017-05-22	Nat Genet	Genome-wide association meta-analysis of 78,308 individuals identifies new loci and genes influencing human intelligence.	Intelligence	up to 58,799 European ancestry adults, up to 19,509 European ancestry children	NA	6q16.1	MIR2113, POU3F2	rs9320913-A	0.4836	4E-11		6.612	z score increase	Affymetrix, Illumina [12104294] (imputed)	N
1337	chr6	98584732	98584733	rs9320913	23722424	Rietveld CA	2013-05-30	Science	GWAS of 126,559 individuals identifies genetic variants associated with educational attainment.	Educational attainment	up to 101,069 European ancestry individuals	25,490 European ancestry individuals	6q16.1	LOC100129158	rs9320913-A	0.483	4E-10	(Edu Years)	0.101	[NR] unit increase	Affymetrix, Illumina, Perlegen [up to 2309290] (imputed)	N
1337	chr6	98585501	98585502	rs17814604	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	6q16.1	NR	rs17814604-A	NR	6E-14		7.5	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1337	chr6	98585501	98585502	rs17814604	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6q16.1	RP11-436D23.1	rs17814604-A	NR	5E-18		8.656	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1337	chr6	98585501	98585502	rs17814604	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	6q16.1	RP11-436D23.1	rs17814604-A	NR	3E-14		0.025479343	[0.019-0.032] unit decrease	Affymetrix [NR]	N
1337	chr6	98585501	98585502	rs17814604	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability (MTAG)	436,124 European ancestry individuals	NA	6q16.1	RP11-436D23.1	rs17814604-?	NR	2E-11		6.722	z score decrease	Affymetrix, Illumina, Perlegen [7333576] (imputed)	N
1337	chr6	98585501	98585502	rs17814604	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability	107,207 European ancestry individuals	NA	6q16.1	RP11-436D23.1	rs17814604-?	NR	7E-8		5.399	z score decrease	Affymetrix, Illumina [7357080] (imputed)	N
1337	chr6	98587933	98587934	rs2029241	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	6q16.1		rs2029241-G	0.845	8E-15		0.013	[0.0091-0.0169] unit increase	NR [NR] (imputed)	N
1337	chr6	98588281	98588281	rs576630385	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	6q16.1	NR	rs576630385-ATT	NR	3E-9		0.015	[0.01-0.02] unit decrease	Affymetrix [9000000] (imputed)	N
1337	chr6	98588753	98588754	rs9375225	23459443	Avery CL	2013-03-05	Pharmacogenomics J	Drug-gene interactions and the search for missing heritability: a cross-sectional pharmacogenomics study of the QT interval.	QT interval (drug interaction)	33,781 European ancestry individuals	NA	6q16.1	POU3F2	rs9375225-T	0.48	6E-6	(Tri-Tetra/cyclic antidepressants)			Affymetrix, Illumina [~ 2500000] (imputed)	N
1337	chr6	98591621	98591622	rs2388334	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Bipolar disorder vs Tourette's syndrome and other tic disorders (ordinary least squares (OLS))	20,352 bipolar disorder cases, 4,819 Tourette's syndrome cases	NA	6q16.1		rs2388334-?	NR	1E-12		0.0274	NR unit increase	NR [6254473] (imputed)	N
1337	chr6	98591621	98591622	rs2388334	33263727	Li HJ	2020-12-02	JAMA Psychiatry	Novel Risk Loci Associated With Genetic Risk for Bipolar Disorder Among Han Chinese Individuals: A Genome-Wide Association Study and Meta-analysis.	Bipolar disorder	1,822 Han Chinese ancestry cases, 4,650 Han Chinese ancestry controls, 20,352 European ancestry cases, 31,358 European ancestry controls	NA	6q16.1	POU3F2	rs2388334-A	NR	4E-9		0.939	[0.920-0.959]	Illumina [3742365] (imputed)	N
1337	chr6	98591621	98591622	rs2388334	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Verbal-numerical reasoning	171,304 British ancestry individuals	NA	6q16.1		rs2388334-?	NR	1E-21				NR [7857346] (imputed)	N
1337	chr6	98591621	98591622	rs2388334	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	6q16.1	Intergenic	rs2388334-?		1E-11				NR [6786993] (imputed)	N
1337	chr6	98591621	98591622	rs2388334	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	6q16.1	intergenic	rs2388334-G	0.481	4E-9		1.0671562		NR [9372253] (imputed)	N
1337	chr6	98591621	98591622	rs2388334	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar I disorder	14,879 European ancestry cases, 31,358 European ancestry controls	NA	6q16.1	intergenic	rs2388334-G	0.481	3E-7		1.0800419	[NR]	NR [9372253] (imputed)	N
1337	chr6	98591621	98591622	rs2388334	30804558	Grove J	2019-02-25	Nat Genet	Identification of common genetic risk variants for autism spectrum disorder.	Autism and educational attainment (MTAG)	18,381 European ancestry autism cases, 27,969 European ancestry controls, 328,917 individuals with educational attainment data	NA	6q16.1		rs2388334-A	0.517	3E-12		0.065	[0.047-0.083] unit decrease	Illumina [NR] (imputed)	N
1337	chr6	98591621	98591622	rs2388334	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	6q16.1	POU3F2	rs2388334-A	0.5157	2E-10		0.016480226	[0.011-0.022] unit decrease	Affymetrix [~ 11515000] (imputed)	N
1337	chr6	98591621	98591622	rs2388334	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6q16.1	RP11-436D23.1	rs2388334-A	NR	2E-30		11.469	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1337	chr6	98611299	98611300	rs1487439	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	6q16.1	RP11-436D23.1	rs1487439-A	NR	3E-8		0.01795273	[0.012-0.024] unit decrease	Affymetrix [NR]	N
1337	chr6	98621598	98621599	rs12526299	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	6q16.1	RP11-436D23.1	rs12526299-T	NR	8E-9		0.023478549	[0.015-0.031] unit decrease	Affymetrix [NR]	N
1337	chr6	98630880	98630881	rs9688806	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	6q16.1	NR	rs9688806-T	0.125717	8E-10		6.14	z score increase	NR [10847151] (imputed)	N
1337	chr6	98630880	98630881	rs9688806	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling nervous	373,121 European ancestry individuals	NA	6q16.1	FBXL4	rs9688806-T	0.125717	2E-10		6.38	z score increase	NR [10847151] (imputed)	N
1337	chr6	98636904	98636905	rs12195240	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	6q16.1	NR	rs12195240-A	0.285	3E-23		0.0118581	[0.0095-0.0142] unit increase	NR [9732723] (imputed)	N
1337	chr6	98636904	98636905	rs12195240	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	6q16.1	NR	rs12195240-A	0.285	1E-18		0.024910755	[0.019-0.03] unit increase	NR [~ 10000000] (imputed)	N
1337	chr6	98636904	98636905	rs12195240	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	6q16.1	NR	rs12195240-A	0.285	4E-10		0.0101009	[0.0069-0.0133] unit decrease	NR [9732723] (imputed)	N
1337	chr6	98647646	98647647	rs9375284	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	6q16.1	NR	rs9375284-A	NR	9E-10		6.126	z score decrease	Affymetrix [10847151] (imputed)	N
1337	chr6	98650176	98650176	rs112477743	30531941	Doherty A	2018-12-10	Nat Commun	GWAS identifies 14 loci for device-measured physical activity and sleep duration.	Sleep duration	91,105 European ancestry individuals	NA	6q16.1	MIR2113	rs112477743-G	0.718	1E-8		0.029	[0.019-0.039] SD units increase	NR [9926106] (imputed)	N
1337	chr6	98661557	98661558	rs118099815	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6q16.1	Intergenic	rs118099815-T	0.9187	5E-17	(MTAG)	0.0208	[0.016-0.026] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1337	chr6	98661636	98661637	rs62422686	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	6q16.1	NR	rs62422686-C	NR	3E-8		5.529	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1337	chr6	98661636	98661637	rs62422686	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6q16.1	ENSG00000236920, RP11-436D23.1	rs62422686-C	NR	6E-9		5.831	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1337	chr6	98664413	98664414	rs62422687	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	6q16.1	RP11-436D23.1	rs62422687-A	0.1948	3E-12		0.017965304	[0.013-0.023] unit increase	Affymetrix [up to 18485882] (imputed)	N
1337	chr6	98664413	98664414	rs62422687	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	6q16.1	RP11-436D23.1	rs62422687-A	NR	1E-17		0.033415664	[0.026-0.041] unit increase	Affymetrix [NR]	N
1337	chr6	98669090	98669091	rs9375298	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	6q16.1	Intergenic	rs9375298-G	0.7267	8E-40		0.0289	[0.025-0.033] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1337	chr6	98678144	98678145	rs10499016	31263887	Adams MJ	2019-07-01	Int J Epidemiol	Factors associated with sharing e-mail information and mental health survey participation in large population cohorts.	Mental health study participation (provided email address)	224,321 British ancestry cases, 147,096 British ancestry controls	NA	6q16.1	RP11-436D23.1	rs10499016-G	NR	2E-8		0.0081497	[0.0053-0.011] unit decrease	NR [16367095] (imputed)	N
1337	chr6	98685929	98685930	rs9320980	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	6q16.1	POU3F2	rs9320980-A	0.1184	2E-9		0.022055786	[0.015-0.029] unit decrease	Affymetrix [11515109] (imputed)	N
1337	chr6	98693635	98693636	rs35921795	31263887	Adams MJ	2019-07-01	Int J Epidemiol	Factors associated with sharing e-mail information and mental health survey participation in large population cohorts.	Mental health study participation (provided email address)	224,321 British ancestry cases, 147,096 British ancestry controls	NA	6q16.1	RP11-436D23.1	rs35921795-A	NR	1E-8		0.006244	[0.0041-0.0084] unit decrease	NR [16367095] (imputed)	N
1338	chr6	98705294	98705295	rs12195792	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	6q16.1	MMS22L, POU3F2	rs12195792-A	0.2717	5E-15		1.0329		Affymetrix [11880941] (imputed)	N
1338	chr6	98705294	98705295	rs12195792	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	6q16.1	MMS22L, POU3F2	rs12195792-A	0.2717	5E-15		1.0345846		Affymetrix [11880941] (imputed)	N
1338	chr6	98711220	98711221	rs9375328	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking initiation	842,717 European ancestry individuals	NA	6q16.1	MIR2113, POU3F2	rs9375328-C		1E-11		1.027	[NR]	Affymetrix [up to 79000000] (imputed)	N
1338	chr6	98713991	98713992	rs6932108	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6q16.1		rs6932108-C	0.0798	6E-15		0.021	[0.016-0.026] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1338	chr6	98726380	98726381	rs9320995	30617275	Erzurumluoglu AM	2019-01-07	Mol Psychiatry	Meta-analysis of up to 622,409 individuals identifies 40 novel smoking behaviour associated genetic loci.	Smoking initiation	324,851 European ancestry individuals, 21,962 South Asian ancestry individuals	up to 275,596 European ancestry individuals	6q16.1	POU3F2	rs9320995-G	0.18	2E-8		0.015	[0.0091-0.0209] unit increase (replication)	Affymetrix, Illumina [up to 1207583] (imputed)	N
1338	chr6	98739773	98739774	rs6909430	19197348	Lowe JK	2009-02-06	PLoS Genet	Genome-wide association studies in an isolated founder population from the Pacific Island of Kosrae.	Quantitative traits	2,906 Kosraen individuals	NA	6q16.1	intergenic	rs6909430-G	0.08	8E-6	(TSH)	0.49	[NR] mIU/L decrease	Affymetrix [408775]	N
1338	chr6	98739937	98739938	rs9375352	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	6q16.1		rs9375352-A	0.2672	2E-8		0.014	[0.01-0.018] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
1338	chr6	98741735	98741736	rs6933464	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	6q16.1	RP11-436D23.1	rs6933464-T	0.2832	8E-11		0.014575369	[0.01-0.019] unit increase	Affymetrix [up to 18485882] (imputed)	N
1338	chr6	98741735	98741736	rs6933464	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income	286,301 British ancestry individuals	NA	6q16.1	RP11-436D23.1	rs6933464-T	NR	2E-8		0.011294	[0.0074-0.0152] unit increase	Affymetrix [18485882] (imputed)	N
1338	chr6	98744692	98744693	rs7766224	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	6q16.1	NR	rs7766224-A	0.119597	3E-9		5.92	z score decrease	NR [10847151] (imputed)	N
1338	chr6	98744692	98744693	rs7766224	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling nervous	373,121 European ancestry individuals	NA	6q16.1	NR	rs7766224-A	0.119597	3E-9		5.95	z score decrease	NR [10847151] (imputed)	N
1338	chr6	98744945	98744946	rs2892512	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Smoking status (ever vs never smokers)	336,066 British ancestry individuals	NA	6q16.1	NR	rs2892512-C	0.2684	8E-9		1.033	[1.02-1.04]	NR [8968716] (imputed)	N
1338	chr6	98749328	98749329	rs7754741	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	6q16.1	POU3F2	rs7754741-T	0.7284	1E-11		0.015288658	[0.011-0.02] unit decrease	Affymetrix [11514654] (imputed)	N
1338	chr6	98770344	98770345	rs7749175	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	6q16.1		rs7749175-?	NR	7E-8				NR [~ 8900000] (imputed)	N
1338	chr6	98771027	98771028	rs1395973	31476763	Otsuka I	2019-09-02	Neuropsychopharmacology	Genome-wide association studies identify polygenic effects for completed suicide in the Japanese population.	Suicide	746 Japanese ancestry cases, 14,049 Japanese ancestry controls	NA	6q16.1	intergenic	rs1395973-T	NR	4E-7		1.3333333	[1.19-1.47]	Illumina [8625325] (imputed)	N
1338	chr6	98781195	98781196	rs75477016	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	6q16.1	NR	rs75477016-T	NR	4E-12		6.943	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1338	chr6	98781195	98781196	rs75477016	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6q16.1	RP11-436D23.1	rs75477016-T	NR	2E-12		7.052	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1338	chr6	98785795	98785796	rs7758926	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6q16.1	RP11-436D23.1	rs7758926-A	NR	4E-9		5.901	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1338	chr6	98790796	98790797	rs12196849	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	6q16.1	RP11-436D23.1	rs12196849-A	0.3636	5E-8		0.011513268	[0.0074-0.0156] unit increase	Affymetrix [up to 18485882] (imputed)	N
1338	chr6	98790796	98790797	rs12196849	31263887	Adams MJ	2019-07-01	Int J Epidemiol	Factors associated with sharing e-mail information and mental health survey participation in large population cohorts.	Mental health study participation (provided email address)	224,321 British ancestry cases, 147,096 British ancestry controls	NA	6q16.1	RP11-436D23.1	rs12196849-A	NR	3E-8		0.0062118	[0.004-0.0084] unit increase	NR [16367095] (imputed)	N
1338	chr6	98790796	98790797	rs12196849	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	6q16.1	RP11-436D23.1	rs12196849-A	NR	1E-9		0.018858798	[0.013-0.025] unit increase	Affymetrix [NR]	N
1338	chr6	98809184	98809185	rs116915314	34020725	Reddy JS	2021-05-21	Acta Neuropathol Commun	Genome-wide analysis identifies a novel LINC-PINT splice variant associated with vascular amyloid pathology in Alzheimer's disease.	Cerebral amyloid angiopathy x APOEe4 status interaction in Alzheimer's disease	534 European ancestry APOEe4 carriers, 287 European ancestry APOEe4 non-carriers	NA		MIR2113	rs116915314-G	0.03	3E-6				Illumina [1679420] (imputed)	N
1338	chr6	98809678	98809679	rs4839955	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	6q16.1		rs4839955-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1338	chr6	98822233	98822234	rs4240561	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	6q16.1	POU3F2	rs4240561-A	0.71	2E-9		0.0078	[0.0053-0.0103] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
1338	chr6	98824190	98824191	rs6916079	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	6q16.1	POU3F2	rs6916079-T	0.7431	9E-10		0.016598681	[0.011-0.022] unit decrease	Affymetrix [11515109] (imputed)	N
1339	chr6	98831635	98831636	rs9375403	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	6q16.1	Intergenic	rs9375403-C	0.2463	1E-19	(MTAG)	0.0189	[0.015-0.023] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1339	chr6	98831635	98831636	rs9375403	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	6q16.1	Intergenic	rs9375403-C	0.2457	5E-24	(MTAG)	0.0194	[0.016-0.023] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1339	chr6	98831635	98831636	rs9375403	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	6q16.1	Intergenic	rs9375403-G	0.7543	2E-12		0.0185	[0.013-0.024] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1339	chr6	98831635	98831636	rs9375403	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6q16.1		rs9375403-C	0.2423	2E-14		0.0126	[0.0095-0.0157] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1339	chr6	98831635	98831636	rs9375403	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6q16.1	Intergenic	rs9375403-C	0.2423	6E-19	(MTAG)	0.0137	[0.011-0.017] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1339	chr6	98831635	98831636	rs9375403	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	6q16.1	Intergenic	rs9375403-C	0.2395	8E-13	(MTAG)	0.0192	[0.014-0.024] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1339	chr6	98850852	98850853	rs9321055	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	6q16.1		rs9321055-A	0.316	2E-16		0.01	[0.008-0.012] unit increase	NR [NR] (imputed)	N
1339	chr6	98861002	98861003	rs9491524	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	6q16.1	Intergenic	rs9491524-C	0.987	2E-6	(AA)	0.135	NR unit increase	Illumina [NR] (imputed)	N
1339	chr6	98888739	98888740	rs2132029	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking initiation (ever regular vs never regular)	up to 433,216 European ancestry individuals	NA	6q16.1	POU3F2	rs2132029-T	0.318	3E-10		0.0154	[0.011-0.02] unit increase	Illumina [~ 250000] (imputed)	N
1339	chr6	98896666	98896667	rs9321063	23934736	Yu B	2013-08-11	Genet Epidemiol	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels  (X-11787)	1,260 African American individuals	NA	6q16.1	LOC100129158	rs9321063-A		2E-6		0.07	[0.04-0.10] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1339	chr6	98919263	98919264	rs9491640	19023125	Potkin SG	2008-11-20	Schizophr Bull	A genome-wide association study of schizophrenia using brain activation as a quantitative phenotype.	Brain imaging in schizophrenia (dorsolateral prefrontal cortex interaction)	46 European ancestry cases, 60 European ancestry controls, 18 cases, 14 controls	NA	6q16.1	POU3F2	rs9491640-?	0.06	9E-6				Illumina [302783]	N
1339	chr6	98937145	98937146	rs2213553	22952603	Hart AB	2012-08-28	PLoS One	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 10 individuals	NA	6q16.1	intergenic	rs2213553-?	NR	5E-6	(SF9)			Affymetrix [5476100] (imputed)	N
1340	chr6	98975809	98975810	rs211215	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6q16.1	FBXL4	rs211215-?	NR	6E-6	(glutamate)	0.17349628	[0.099-0.248] unit increase	Affymetrix [at least 2500000] (imputed)	N
1340	chr6	98990488	98990489	rs6904416	22788528	Kong M	2012-07-13	Int J Immunogenet	Genetic associations with C-reactive protein level and white blood cell count in the KARE study.	C-reactive protein and white blood cell count	8,722 individuals	NA	6q16.1	intergenic	rs6904416-C	0.019	9E-10	(CRP)	0.183	[NR] mg/dl increase	Affymetrix [1701735] (imputed)	N
1340	chr6	98995840	98995841	rs146119674	30583798	Bovijn J	2018-12-21	Am J Hum Genet	GWAS Identifies Risk Locus for Erectile Dysfunction and Implicates Hypothalamic Neurobiology and Diabetes in Etiology.	Erectile dysfunction	6,175 European ancestry male cases, 217,630 European ancestry male controls	NA	6q16.1	POU3F2	rs146119674-?	NR	2E-6				Affymetrix, Illumina [at least 807411] (imputed)	N
1340	chr6	99011500	99011501	rs2086512	21993531	Kuparinen T	2011-10-13	Genes Immun	Genome-wide association study does not reveal major genetic determinants for anti-cytomegalovirus antibody response.	Cytomegalovirus antibody response	1,485 European ancestry sero-postitive individuals, 648 European ancestry sero-negative individuals	NA	6q16.1	intergenic	rs2086512-A	0.06	9E-6		0.324	[0.18-0.47] unit increase	Illumina [546677]	N
1340	chr6	99026961	99026962	rs9372873	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	6q16.1	NR	rs9372873-?	NR	3E-15				Affymetrix [NR]	N
1340	chr6	99028865	99028866	rs1383808	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6q16.1	POU3F2	rs1383808-G	0.0080	9E-6	(Arm span )	0.03	[NR] cm increase	Illumina [899892]	N
1342	chr6	99230655	99230656	rs117090858	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Chickenpox	107,769 European ancestry cases, 15,982 European ancestry controls	NA	6q16.1	NR	rs117090858-?	NR	8E-6		0.1363	[0.077-0.195] unit decrease	Illumina [at least 560000] (imputed)	N
1342	chr6	99265083	99265084	rs7769568	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	6q16.1	NR	rs7769568-A	NR	3E-8		5.528	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1342	chr6	99283375	99283376	rs195860	33407418	Jonsson A	2021-01-06	BMC Med Genomics	Genome-wide association study of circulating levels of glucagon during an oral glucose tolerance test.	Glucagon levels in response to oral glucose tolerance test (decremental area under the curve for 0-30 minutes)	553 European ancestry individuals, 1,346 individuals	NA	6q16.1	POU3F2	rs195860-T	0.13	9E-6		0.215	[0.12-0.31] unit decrease	Illumina [NR] (imputed)	N
1342	chr6	99284531	99284532	rs3823036	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	6q16.1	Intergenic	rs3823036-T	0.684	6E-13	(MTAG)	0.0139	[0.01-0.018] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1342	chr6	99284531	99284532	rs3823036	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	6q16.1	Intergenic	rs3823036-T	0.684	5E-10		0.0131	[0.009-0.0172] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1342	chr6	99284531	99284532	rs3823036	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	6q16.1	Intergenic	rs3823036-T	0.6837	2E-11	(MTAG)	0.0119	[0.0084-0.0154] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1342	chr6	99284531	99284532	rs3823036	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6q16.1	Intergenic	rs3823036-T	0.6743	1E-8	(MTAG)	0.0079	[0.0052-0.0106] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1342	chr6	99284531	99284532	rs3823036	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	6q16.1	Intergenic	rs3823036-T	0.6679	2E-12	(MTAG)	0.0171	[0.012-0.022] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1342	chr6	99284531	99284532	rs3823036	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	6q16.1	NR	rs3823036-T	NR	9E-11		6.481	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1342	chr6	99284531	99284532	rs3823036	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6q16.1	NR	rs3823036-?	NR	4E-7		5.093	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1342	chr6	99292135	99292136	rs2294405	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	6q16.1	NR	rs2294405-G	0.295229	2E-8		0.038619366	[0.025-0.052] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1342	chr6	99292135	99292136	rs2294405	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	6q16.1	Intergenic	rs2294405-A	0.3304	2E-8		0.0171	[0.011-0.023] unit increase	Affymetrix, Illumina [10100000] (imputed)	N
1343	chr6	99393977	99393978	rs146090228	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		FBXL4	rs146090228-?	NR	1E-11	(male)	3.00855	[NR] unit increase	Affymetrix [NR] (imputed)	N
1343	chr6	99469343	99469344	rs6917190	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	6q16.2	NA	rs6917190-T		7E-14		0.0137336	[0.01-0.017] unit decrease	Illumina [13288253] (imputed)	N
1344	chr6	99492948	99492949	rs9399012	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6q16.2	NR	rs9399012-?	NR	1E-6		4.851	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1344	chr6	99494598	99494599	rs146531654	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	6q16.2		rs146531654-T	0.0095934	3E-6		0.16255	[0.094-0.231] unit increase	Affymetrix [15580782] (imputed)	N
1344	chr6	99532264	99532265	rs9385616	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	6q16.2	NR	rs9385616-G	0.0526839	3E-9		0.08343928	[0.056-0.111] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1344	chr6	99532264	99532265	rs9385616	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	6q16.2	Intergenic	rs9385616-A	0.0514	3E-9	(MTAG)	0.0309	[0.021-0.041] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1344	chr6	99532264	99532265	rs9385616	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	6q16.2	Intergenic	rs9385616-A	0.0514	2E-9		0.0385	[0.026-0.051] unit increase	Affymetrix, Illumina [10100000] (imputed)	N
1344	chr6	99536297	99536298	rs13216468	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6q16.2	Intergenic	rs13216468-T	0.0725	5E-10	(MTAG)	0.0159	[0.011-0.021] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1344	chr6	99546480	99546481	rs12197025	29970889	Day FR	2018-07-03	Nat Commun	Elucidating the genetic basis of social interaction and isolation.	Regular attendance at a religious group	66,259 European ancestry cases, 386,043 European ancestry controls	NA	6q16.2	POU3F2, FBXL4, FAXC, COQ3	rs12197025-C	0.812824	2E-8		0.00531926	[0.0035-0.0072] unit increase	NR [NR] (imputed)	N
1344	chr6	99551969	99551970	rs10457592	27479909	Hyde CL	2016-08-01	Nat Genet	Identification of 15 genetic loci associated with risk of major depression in individuals of European descent.	Major depressive disorder	84,847 European ancestry cases, 241,266 European ancestry controls	45,773 European ancestry cases, 106,354 European ancestry controls	6q16.2	FBXL4, FAXC	rs10457592-G	0.760869	6E-6		0.0372	[0.023-0.051] unit decrease	Illumina [1220000] (imputed)	N
1344	chr6	99566520	99566521	rs9402472	29700475	Wray NR	2018-04-26	Nat Genet	Genome-wide association analyses identify 44 risk variants and refine the genetic architecture of major depression.	Depression	135,458 European ancestry cases, 344,901 European ancestry controls	NA	6q16.2	FBXL4, C6orf168	rs9402472-A	0.24	3E-8		1.03	[1.02-1.04]	NR [9622763] (imputed)	N
1344	chr6	99575873	99575874	rs4454147	31044621	Rimpela JM	2019-05-02	Blood Press	Genome-wide association study of white-coat effect in hypertensive patients.	White coat effect (clinic systolic blood pressure minus ambulatory systolic blood pressure)	206 Finnish ancestry individuals	NA	6q16.2	FAXC	rs4454147-G	0.48	3E-6		3.7	[2.13-5.27] unit decrease	Illumina [629414]	N
1344	chr6	99578370	99578371	rs143000580	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-1-receptor antagonist levels	3,638 Finnish ancestry individuals	NA	6q16.2	NR	rs143000580-G		3E-6		0.9024	[0.52-1.28] SD units increase	NR [10700000] (imputed)	N
1344	chr6	99591428	99591429	rs12205367	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Hyperopia	10,828 European ancestry hyperopia cases, 21,416 European ancestry emmetropia controls	NA	6q16.2	NR	rs12205367-?	NR	6E-6		0.104595	[0.059-0.15] unit decrease	NR [13958389] (imputed)	N
1344	chr6	99592403	99592404	rs11154718	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	6q16.2	FBXL4, FAXC	rs11154718-C	0.5700000000000001	1E-9		1.0235735		Affymetrix [11880941] (imputed)	N
1344	chr6	99596908	99596909	rs9375946	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms	354,862 European ancestry individuals	NA	6q16.2	NR	rs9375946-T	0.4254	1E-8		0.0136	[0.0089-0.0183] unit increase	Illumina [NR] (imputed)	N
1344	chr6	99598755	99598756	rs2388840	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms (MTAG)	955,012 individuals	NA	6q16.2	NR	rs2388840-?		1E-8				NR [520857]	N
1344	chr6	99598755	99598756	rs2388840	31926635	Coleman JRI	2019-11-01	Biol Psychiatry	The Genetics of the Mood Disorder Spectrum: Genome-wide Association Analyses of More Than 185,000 Cases and 439,000 Controls.	Bipolar disorder or major depressive disorder	164,933 European ancestry major depressive disorder cases, 20,352 European ancestry bipolar disorder cases, 439,741 European ancestry controls	NA	6q16.2	NR	rs2388840-?	NR	6E-8				NR [NR] (imputed)	N
1344	chr6	99598755	99598756	rs2388840	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	6q16.2	NR	rs2388840-G	0.4243	1E-9		1.0373445	[1.03-1.05]	Affymetrix, Illumina [NR] (imputed)	N
1344	chr6	99600082	99600083	rs9321394	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	6q16.2	NR	rs9321394-?	NR	2E-6				Illumina [at least 7383741] (imputed)	N
1344	chr6	99601885	99601886	rs987773	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	6q16.2	Intergenic	rs987773-C	0.4283	3E-8	(MTAG)	0.0093	[0.006-0.0126] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1344	chr6	99605158	99605159	rs72945224	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6q16.2		rs72945224-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1345	chr6	99632322	99632323	rs1566115	30487263	Pollack S	2018-11-28	Diabetes	Multiethnic Genome-wide Association Study of Diabetic Retinopathy using Liability Threshold Modeling of Duration of Diabetes and Glycemic Control.	Proliferative diabetic retinopathy (vs no DR)	398 European ancestry cases, 1,970 European ancestry controls, 1,097 African American cases, 941 African American controls	1,354 East Asian ancestry cases, 1130 East Asian ancestry controls, 801 European ancestry cases, 2,880 European ancestry controls, 232 Hispanic cases, 1,048 Hispanic controls	6q16.2	NR	rs1566115-?	NR	2E-6	(AA)	1.87	[NR]	Affymetrix, Illumina [NR] (imputed)	N
1345	chr6	99672013	99672014	rs2132683	20171287	Stein JL	2010-02-17	Neuroimage	Voxelwise genome-wide association study (vGWAS).	Brain structure	740 European ancestry individuals	NA	6q16.2	intergenic	rs2132683-?	0.33	1E-6				Illumina [448293]	N
1345	chr6	99683122	99683123	rs35150263	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6q16.2	NR	rs35150263-A	0.01394	6E-9	(AGXT)	5.614	NR unit increase	Illumina [1671387] (imputed)	N
1345	chr6	99683122	99683123	rs35150263	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6q16.2	NR	rs35150263-A	0.01394	2E-9	(AMACR)	0.04784	NR unit increase	Illumina [1671387] (imputed)	N
1345	chr6	99687641	99687642	rs1160074	34130359	Curtis SW	2021-06-15	Genet Epidemiol	FAT4 identified as a potential modifier of orofacial cleft laterality.	Left unilateral cleft lip and palate	98 Asian ancestry cases, 199 European ancestry cases, 340 Hispanic cases, 1 case, 1,626 controls	NA	6q16.2	NR	rs1160074-?		4E-6		1.66	[1.33-2.06]	Illumina [539473] (imputed)	N
1345	chr6	99700037	99700038	rs190225848	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (90 or 130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	6q16.2	intergenic	rs190225848-?	NR	5E-6		0.153	[0.053-0.253] unit decrease	Illumina [at least 13000000] (imputed)	N
1345	chr6	99739941	99739942	rs221584	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	6q16.2	NR	rs221584-G	0.816667	2E-8		0.00956269	[0.0063-0.0128] unit increase	Affymetrix [16578495] (imputed)	N
1346	chr6	99782878	99782879	rs17059400	23942779	McGue M	2013-08-14	Behav Genet	A genome-wide association study of behavioral disinhibition.	Illicit drug use	7,188 European ancestry individuals	NA	6q16.2	NR	rs17059400-C	0.065	2E-6		18.365	[NR] unit increase	Illumina [527829]	N
1346	chr6	99800121	99800122	rs9402699	34441435	Corma-Gomez A	2021-08-20	Diagnostics (Basel)	A Genome-Wide Association Study on Liver Stiffness Changes during Hepatitis C Virus Infection Cure.	Liver stiffness changes at sustained virological response following antiviral therapy in HCV infection	242 European ancestry individuals	NA	6q16.2		rs9402699-A	0.277	5E-6		11.49	[6.662-16.31] unit decrease	Affymetrix [6939676] (imputed)	N
1346	chr6	99836808	99836809	rs11154811	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	6q16.2	NR	rs11154811-C	NR	3E-12		0.0176	[0.013-0.022] unit increase	Affymetrix [9000000] (imputed)	N
1347	chr6	99879245	99879246	rs142489926	32724131	Li QS	2020-07-28	Sci Rep	Genome-wide association study and polygenic risk score analysis of esketamine treatment response.	Response to esketamine in treatment resistant depression	255 European ancestry individuals	NA	6q16.2	NR	rs142489926-?		5E-6		42.1954	[24.25-60.14] unit decrease	NR [NR] (imputed)	N
1347	chr6	99904692	99904694	rs112242740	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	6q16.2		rs112242740-G	NR	2E-8		0.0103	[0.0068-0.0138] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
1347	chr6	99911408	99911409	rs12207489	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6q16.2	SFRS18	rs12207489-?	NR	9E-6	(creatinine)	0.15618896	[0.087-0.225] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1347	chr6	99934458	99934459	rs13201542	34441435	Corma-Gomez A	2021-08-20	Diagnostics (Basel)	A Genome-Wide Association Study on Liver Stiffness Changes during Hepatitis C Virus Infection Cure.	Liver stiffness changes at sustained virological response following antiviral therapy in HCV infection	242 European ancestry individuals	NA	6q16.2		rs13201542-A	0.076	1E-5		17.47	[9.894-25.04] unit decrease	Affymetrix [6939676] (imputed)	N
1347	chr6	99989233	99989234	rs62432346	25461247	Lehmann DS	2015-02-01	Pharmacogenet Genomics	Genome-wide association study of virologic response with efavirenz-containing or abacavir-containing regimens in AIDS clinical trials group protocols.	Response to efavirenz-containing treatment in HIV 1 infection (virologic failure)	Up to 737 European ancestry individuals, Up to 545 Black individuals, Up to 314 Hispanic individuals	NA	6q16.2	NR	rs62432346-A	NR	5E-6	(phenotype 1)	4.6	[NR]	Illumina [> 8000000] (imputed)	N
1347	chr6	99989233	99989234	rs62432346	25461247	Lehmann DS	2015-02-01	Pharmacogenet Genomics	Genome-wide association study of virologic response with efavirenz-containing or abacavir-containing regimens in AIDS clinical trials group protocols.	Response to abacavir-containing treatment in HIV-1 infection (virologic failure)	Up 346 European ancestry individuals, Up to 265 Black individuals, Up to 175 Hispanic individuals	NA	6q16.2	NR	rs62432346-A	NR	5E-6	(phenotype 3)	4.6	[NR]	Illumina [> 8000000] (imputed)	N
1347	chr6	100003325	100003326	rs519695	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	6q16.2		rs519695-C	0.41	4E-9		5.88	z score increase	Affymetrix [9061022] (imputed)	N
1348	chr6	100020650	100020651	rs181878688	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Natural Killer T Absolute Count	3,653 Sardinian (founder/genetic isolate) ancestry individuals	NA	6q16.2		rs181878688-A	0.03541	3E-21		0.651	[0.52-0.79] unit increase	Illumina [18427377] (imputed)	N
1348	chr6	100020650	100020651	rs181878688	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Natural Killer T %lymphocyte	3,669 Sardinian (founder/genetic isolate) ancestry individuals	NA	6q16.2		rs181878688-A	0.03525	1E-25		0.7276	[0.59-0.86] unit increase	Illumina [18430820] (imputed)	N
1348	chr6	100020650	100020651	rs181878688	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Natural Killer T %T cell	3,669 Sardinian (founder/genetic isolate) ancestry individuals	NA	6q16.2		rs181878688-A	0.03525	3E-29		0.7738	[0.64-0.91] unit increase	Illumina [18430820] (imputed)	N
1348	chr6	100020650	100020651	rs181878688	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Effector Memory CD4-CD8- T cell Absolute Count	3,395 Sardinian (founder/genetic isolate) ancestry individuals	NA	6q16.2		rs181878688-A	0.03559	1E-11		0.4478	[0.32-0.58] unit increase	Illumina [18332267] (imputed)	N
1348	chr6	100020650	100020651	rs181878688	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Effector Memory CD4-CD8- T cell %T cell	3,427 Sardinian (founder/genetic isolate) ancestry individuals	NA	6q16.2		rs181878688-A	0.03555	4E-15		0.5245	[0.39-0.65] unit increase	Illumina [18349913] (imputed)	N
1348	chr6	100020650	100020651	rs181878688	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8dim T cell Absolute Count	3,652 Sardinian (founder/genetic isolate) ancestry individuals	NA	6q16.2		rs181878688-A	0.03542	8E-17		0.5544	[0.42-0.68] unit increase	Illumina [18427348] (imputed)	N
1348	chr6	100020650	100020651	rs181878688	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8dim T cell %leukocyte	3,668 Sardinian (founder/genetic isolate) ancestry individuals	NA	6q16.2		rs181878688-A	0.03526	2E-19		0.6171	[0.48-0.75] unit increase	Illumina [18430788] (imputed)	N
1348	chr6	100020650	100020651	rs181878688	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8dim T cell %T cell	3,668 Sardinian (founder/genetic isolate) ancestry individuals	NA	6q16.2		rs181878688-A	0.03526	1E-22		0.6635	[0.53-0.8] unit increase	Illumina [18430788] (imputed)	N
1348	chr6	100020650	100020651	rs181878688	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8dim Natural Killer T Absolute Count	3,652 Sardinian (founder/genetic isolate) ancestry individuals	NA	6q16.2		rs181878688-A	0.03542	4E-37		0.8577	[0.73-0.99] unit increase	Illumina [18427348] (imputed)	N
1348	chr6	100020650	100020651	rs181878688	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8dim Natural Killer T %lymphocyte	3,668 Sardinian (founder/genetic isolate) ancestry individuals	NA	6q16.2		rs181878688-A	0.03526	2E-40		0.8985	[0.77-1.03] unit increase	Illumina [18430788] (imputed)	N
1348	chr6	100020650	100020651	rs181878688	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8dim Natural Killer T %T cell	3,668 Sardinian (founder/genetic isolate) ancestry individuals	NA	6q16.2		rs181878688-A	0.03526	4E-43		0.9338	[0.8-1.06] unit increase	Illumina [18430788] (imputed)	N
1348	chr6	100020650	100020651	rs181878688	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD45RA- CD4+ T cell %T cell	3,427 Sardinian (founder/genetic isolate) ancestry individuals	NA	6q16.2		rs181878688-A	0.03555	9E-10		0.4053	[0.28-0.53] unit decrease	Illumina [18349913] (imputed)	N
1348	chr6	100020650	100020651	rs181878688	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4-CD8- T cell Absolute Count	3,652 Sardinian (founder/genetic isolate) ancestry individuals	NA	6q16.2		rs181878688-A	0.03542	2E-10		0.4128	[0.29-0.54] unit increase	Illumina [18427348] (imputed)	N
1348	chr6	100020650	100020651	rs181878688	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4-CD8- T cell %leukocyte	3,668 Sardinian (founder/genetic isolate) ancestry individuals	NA	6q16.2		rs181878688-A	0.03526	5E-13		0.4762	[0.35-0.6] unit increase	Illumina [18430788] (imputed)	N
1348	chr6	100020650	100020651	rs181878688	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4-CD8- T cell %T cell	3,668 Sardinian (founder/genetic isolate) ancestry individuals	NA	6q16.2		rs181878688-A	0.03526	1E-14		0.5153	[0.39-0.65] unit increase	Illumina [18430788] (imputed)	N
1348	chr6	100020650	100020651	rs181878688	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4-CD8- Natural Killer T Absolute Count	3,652 Sardinian (founder/genetic isolate) ancestry individuals	NA	6q16.2		rs181878688-A	0.03542	7E-35		0.8245	[0.69-0.95] unit increase	Illumina [18427348] (imputed)	N
1348	chr6	100020650	100020651	rs181878688	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4-CD8- Natural Killer T %lymphocyte	3,668 Sardinian (founder/genetic isolate) ancestry individuals	NA	6q16.2		rs181878688-A	0.03526	3E-38		0.8724	[0.74-1] unit increase	Illumina [18430788] (imputed)	N
1348	chr6	100020650	100020651	rs181878688	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4-CD8- Natural Killer T %T cell	3,668 Sardinian (founder/genetic isolate) ancestry individuals	NA	6q16.2		rs181878688-A	0.03526	6E-41		0.906	[0.78-1.04] unit increase	Illumina [18430788] (imputed)	N
1348	chr6	100020650	100020651	rs181878688	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4+ T cell %leukocyte	3,668 Sardinian (founder/genetic isolate) ancestry individuals	NA	6q16.2		rs181878688-A	0.03526	6E-12		0.4635	[0.33-0.6] unit decrease	Illumina [18430788] (imputed)	N
1348	chr6	100020650	100020651	rs181878688	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4+ T cell %T cell	3,668 Sardinian (founder/genetic isolate) ancestry individuals	NA	6q16.2		rs181878688-A	0.03526	1E-10		0.4393	[0.31-0.57] unit decrease	Illumina [18430788] (imputed)	N
1348	chr6	100020650	100020651	rs181878688	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD3 on Natural Killer T	3,113 Sardinian (founder/genetic isolate) ancestry individuals	NA	6q16.2		rs181878688-A	0.03476	3E-13		0.5373	[0.39-0.68] unit increase	Illumina [18030777] (imputed)	N
1348	chr6	100020650	100020651	rs181878688	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28- CD8dim T cell Absolute Count	3,408 Sardinian (founder/genetic isolate) ancestry individuals	NA	6q16.2		rs181878688-A	0.03546	6E-13		0.5095	[0.37-0.65] unit increase	Illumina [18340221] (imputed)	N
1348	chr6	100020650	100020651	rs181878688	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28- CD8dim T cell %T cell	3,440 Sardinian (founder/genetic isolate) ancestry individuals	NA	6q16.2		rs181878688-A	0.03542	1E-16		0.5821	[0.45-0.72] unit increase	Illumina [18357815] (imputed)	N
1348	chr6	100020650	100020651	rs181878688	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28- CD4-CD8- T cell %T cell	3,440 Sardinian (founder/genetic isolate) ancestry individuals	NA	6q16.2		rs181878688-A	0.03542	1E-10		0.4582	[0.32-0.6] unit increase	Illumina [18357815] (imputed)	N
1348	chr6	100020650	100020651	rs181878688	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28+ CD45RA+ CD8dim T cell %CD8dim T cell	3,440 Sardinian (founder/genetic isolate) ancestry individuals	NA	6q16.2		rs181878688-A	0.03542	2E-10		0.4343	[0.3-0.57] unit decrease	Illumina [18357815] (imputed)	N
1348	chr6	100020650	100020651	rs181878688	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28 on CD28+ CD4-CD8- T cell	2,919 Sardinian (founder/genetic isolate) ancestry individuals	NA	6q16.2		rs181878688-A	0.03501	8E-25		0.7777	[0.63-0.92] unit decrease	Illumina [17954441] (imputed)	N
1348	chr6	100020650	100020651	rs181878688	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD25++ CD45RA- CD4 not regulatory T cell Absolute Count	3,405 Sardinian (founder/genetic isolate) ancestry individuals	NA	6q16.2		rs181878688-A	0.03549	8E-9		0.4127	[0.27-0.55] unit decrease	Illumina [18335935] (imputed)	N
1348	chr6	100020650	100020651	rs181878688	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD25++ CD45RA- CD4 not regulatory T cell %T cell	3,437 Sardinian (founder/genetic isolate) ancestry individuals	NA	6q16.2		rs181878688-A	0.03545	1E-8		0.4	[0.26-0.54] unit decrease	Illumina [18353565] (imputed)	N
1348	chr6	100020650	100020651	rs181878688	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD25++ CD4+ T cell %T cell	3,437 Sardinian (founder/genetic isolate) ancestry individuals	NA	6q16.2		rs181878688-A	0.03545	2E-8		0.3933	[0.26-0.53] unit decrease	Illumina [18353565] (imputed)	N
1348	chr6	100020650	100020651	rs181878688	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD16-CD56 on Natural Killer T	3,113 Sardinian (founder/genetic isolate) ancestry individuals	NA	6q16.2		rs181878688-A	0.03476	8E-35		0.9152	[0.77-1.06] unit increase	Illumina [18030777] (imputed)	N
1348	chr6	100020650	100020651	rs181878688	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD127 on CD28+ CD4-CD8- T cell	2,918 Sardinian (founder/genetic isolate) ancestry individuals	NA	6q16.2		rs181878688-A	0.03503	1E-9		0.4471	[0.3-0.59] unit increase	Illumina [17954416] (imputed)	N
1348	chr6	100051299	100051300	rs114658003	33948810	Gurinovich A	2021-05-04	Geroscience	Effect of longevity genetic variants on the molecular aging rate.	Longevity (100 years and older)	1,320 European ancestry cases, 2,899 European ancestry controls	312 Ashkenazi Jewish ancestry cases, 638 Ashkenazi Jewish ancestry controls	6q16.2	CCNC, PRDM13	rs114658003-A	4.0E-4	4E-8	(EA)	5.5104795	[NR] unit increase	Illumina [9039731] (imputed)	N
1348	chr6	100068486	100068487	rs79719606	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	6q16.2	NR	rs79719606-?	NR	5E-8				Illumina [7760689] (imputed)	N
1348	chr6	100074900	100074901	rs857614	33453761	Jorgensen CS	2021-01-14	Lancet Child Adolesc Health	Identification of genetic loci associated with nocturnal enuresis: a genome-wide association study.	Nocturnal enuresis	3,882 European ancestry cases, 31,073 European ancestry controls	5,475 European ancestry cases, 303,996 European ancestry controls	6q16.2	NR	rs857614-T	0.249	2E-12		1.16	[1.113-1.209]	NR [496370] (imputed)	N
1348	chr6	100079773	100079774	rs9389556	33568662	Dashti HS	2021-02-10	Nat Commun	Genetic determinants of daytime napping and effects on cardiometabolic health.	Daytime nap	452,633 European ancestry individuals	541,333 European ancestry individuals	6q16.2	PRDM13, MCHR2, CCNC	rs9389556-G		3E-10		0.0062	[0.0042-0.0082] unit increase	Affymetrix [13304133] (imputed)	N
1348	chr6	100091541	100091544	rs377527229	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6q16.2	NR	rs377527229-C	0.2282	6E-6	(EA)	0.0341	[0.019-0.049] unit increase	Illumina [~ 11800000] (imputed)	N
1348	chr6	100097383	100097384	rs1856502	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (late vs. average onset voice breaking)	11,334 European ancestry late onset individuals, 172,138 European ancestry average onset individuals	NA	6q16.2		rs1856502-T	NR	4E-10		0.00496953	[0.0034-0.0065] years increase	NR [7400000] (imputed)	N
1348	chr6	100097383	100097384	rs1856502	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (late vs. average onset facial hair)	26,066 European ancestry late onset individuals, 161,175 European ancestry average onset individuals	NA	6q16.2		rs1856502-T	NR	3E-14		0.00834661	[0.0061-0.0105] years increase	NR [7400000] (imputed)	N
1348	chr6	100097383	100097384	rs1856502	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (early vs. average onset voice breaking)	8,245 European ancestry early onset individuals, 172,138 European ancestry average onset individuals	NA	6q16.2		rs1856502-T	NR	2E-7		0.00363676	[0.0023-0.005] years decrease	NR [7400000] (imputed)	N
1348	chr6	100097383	100097384	rs1856502	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (early vs. average onset facial hair)	13,226 European ancestry early onset individuals, 161,175 European ancestry average onset individuals	NA	6q16.2		rs1856502-T	NR	9E-11		0.00576923	[0.004-0.0075] years decrease	NR [7400000] (imputed)	N
1348	chr6	100097383	100097384	rs1856502	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (age at voice breaking MTAG)	205,354 European ancestry individuals	NA	6q16.2		rs1856502-T	NR	3E-28		0.035802234	[0.029-0.042] years increase	NR [7400000] (imputed)	N
1348	chr6	100104288	100104289	rs528808	24939585	Fransen E	2014-06-18	Eur J Hum Genet	Genome-wide association analysis demonstrates the highly polygenic character of age-related hearing impairment.	Age-related hearing impairment	1,489 European ancestry individuals	NA	6q16.2	intergenic	rs528808-?		6E-6	(PC1)	0.1179	[NR] unit increase	Illumina [4167292] (imputed)	N
1348	chr6	100116091	100116092	rs9321659	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	6q16.2		rs9321659-?	NR	4E-23				NR [~ 8900000] (imputed)	N
1348	chr6	100116091	100116092	rs9321659	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	6q16.2	SIM1, MCHR2	rs9321659-A	0.13	3E-16		0.06	[0.044-0.076] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
1348	chr6	100123513	100123514	rs606599	33453761	Jorgensen CS	2021-01-14	Lancet Child Adolesc Health	Identification of genetic loci associated with nocturnal enuresis: a genome-wide association study.	Nocturnal enuresis	3,882 European ancestry cases, 31,073 European ancestry controls	5,475 European ancestry cases, 303,996 European ancestry controls	6q16.2	NR	rs606599-G	0.377	2E-12		1.146	[1.103-1.190]	NR [496370] (imputed)	N
1348	chr6	100132855	100132856	rs546897	35079123	Chambers T	2022-01-25	Mol Psychiatry	Genetic common variants associated with cerebellar volume and their overlap with mental disorders: a study on 33,265 individuals from the UK-Biobank.	Total cerebellar volume (excluding Crus I vermis)	33,265 European ancestry individuals	NA	6q16.2		rs546897-A	NR	1E-9		0.0332	[0.022-0.044] unit decrease	Affymetrix [6193476] (imputed)	N
1349	chr6	100161939	100161940	rs2894889	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	6q16.2		rs2894889-T	NR	1E-11		0.0099	[0.007-0.0128] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1349	chr6	100161939	100161940	rs2894889	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6q16.2		rs2894889-?	NR	5E-13				NR [~ 8900000] (imputed)	N
1349	chr6	100193002	100193003	rs9484245	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	6q16.2	PRDM13, CCNC, MCHR2	rs9484245-?		2E-15				Affymetrix, Illumina [NR] (imputed)	N
1349	chr6	100208437	100208438	rs4840086	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	6q16.2	SIM1, MCHR2	rs4840086-A	0.58	9E-14		0.04	[0.03-0.05] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
1349	chr6	100208437	100208438	rs4840086	21102462	Elks CE	2010-11-21	Nat Genet	Thirty new loci for age at menarche identified by a meta-analysis of genome-wide association studies.	Menarche (age at onset)	86,142 European ancestry female individuals, 557 Old Order Amish (founder/genetic isolate) female individuals, 1,103 Erasmus Rucphen (founder/genetic isolate) female individuals	Up to 12,813 European ancestry female individuals, 910 Val Borbera (founder/genetic isolate) female individuals, 348 Orcadian (founder/genetic isolate) female individuals, 338 Friuli Venezia Giulia (founder/genetic isolate) female individuals, 322 Carlantino (founder/genetic/isolate) female individuals	6q16.2	MCHR2, PRDM13	rs4840086-G	0.42	2E-8		2.1	[1.32-2.88] week decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1349	chr6	100224432	100224433	rs4537153	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6q16.2	NR	rs4537153-A	0.081	5E-8	(IFNgamma_STAT1_of_CD4p_T)			Illumina [5084123] (imputed)	N
1349	chr6	100226857	100226858	rs11155076	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	6q16.2	NR	rs11155076-G	0.788521	4E-13		0.0176973	[0.013-0.023] unit increase	Affymetrix [16583148] (imputed)	N
1349	chr6	100242930	100242931	rs9376454	33453761	Jorgensen CS	2021-01-14	Lancet Child Adolesc Health	Identification of genetic loci associated with nocturnal enuresis: a genome-wide association study.	Nocturnal enuresis	3,882 European ancestry cases, 31,073 European ancestry controls	5,475 European ancestry cases, 303,996 European ancestry controls	6q16.2	NR	rs9376454-T	0.219	1E-13		1.176	1.127-1.227	NR [496370] (imputed)	N
1350	chr6	100283109	100283110	rs12154203	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cystitis	4,921 European ancestry cases, 450,694 European ancestry controls, 1,665 East Asian ancestry cases, 175,288 East Asian ancestry controls	NA	6q16.2		rs12154203-C	NR	1E-8		0.117	[0.077-0.157] unit increase	Affymetrix, Illumina [25842667] (imputed)	N
1350	chr6	100284584	100284585	rs78463612	30217807	Robinson-Cohen C	2018-09-14	J Am Soc Nephrol	Genetic Variants Associated with Circulating Fibroblast Growth Factor 23.	Circulating fibroblast growth factor 23 levels	16,624 European ancestry individuals	4,443 African ancestry individuals	6q16.2	Y_RNA, MCHR2	rs78463612-C	0.9261	8E-7	(EA)	0.0422	[0.025-0.06] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1350	chr6	100291507	100291508	rs9385905	29594489	Apewokin S	2018-03-28	Support Care Cancer	Host genetic susceptibility to Clostridium difficile infections in patients undergoing autologous stem cell transplantation: a genome-wide association study.	Clostridium difficile infection in multiple myeloma	57 European ancestry cases, 589 European ancestry controls	NA	6q16.2	NR	rs9385905-?		2E-6				Illumina [892589]	N
1350	chr6	100296023	100296024	rs4990843	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Word spelling	3,399 European ancestry individuals	NA	6q16.2	Intergenic	rs4990843-A	0.650085714	3E-6		0.133822	[0.078-0.19] unit increase	Illumina [6969139] (imputed)	N
1350	chr6	100321387	100321388	rs62432597	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	6q16.2		rs62432597-A	0.641	5E-16		0.01	[0.008-0.012] unit increase	NR [NR] (imputed)	N
1350	chr6	100328197	100328198	rs4840097	23577725	Naj AC	2013-05-01	Ann Hum Genet	Genetic factors in nonsmokers with age-related macular degeneration revealed through genome-wide gene-environment interaction analysis.	Age-related macular degeneration (smoking status interaction)	548 European ancestry ever smoking cases, 278 European ancestry ever smoking controls, 346 European ancestry never smoking cases, 247 European ancestry never smoking controls	NA	6q16.2	intergenic	rs4840097-G	0.31	5E-7				Affymetrix [2543887] (imputed)	N
1350	chr6	100345237	100345238	rs2397678	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	6q16.2	AS1, M2	rs2397678-A	0.306367	2E-11		0.0153976	[0.011-0.02] unit increase	NR [16516521] (imputed)	N
1350	chr6	100347506	100347507	rs6931356	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	6q16.2	NR	rs6931356-T	0.698	4E-8		0.00791963	[0.0051-0.0107] unit increase	NR [~ 9732723] (imputed)	N
1350	chr6	100347744	100347745	rs6936160	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	6q16.2	NR	rs6936160-T	0.698	1E-13		0.00870438	[0.0064-0.011] unit increase	NR [9732723] (imputed)	N
1350	chr6	100347744	100347745	rs6936160	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	6q16.2	NR	rs6936160-T	0.698	4E-13	(Conditioned on chr6:101329173)	0.020106759	[0.015-0.026] unit increase	NR [~ 10000000] (imputed)	N
1350	chr6	100359767	100359768	rs117086179	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large HDL	115,082 European ancestry individuals	NA	6q16.2		rs117086179-C	0.987543	5E-8		0.096422	[0.062-0.131] unit decrease	NR [11722792] (imputed)	N
1350	chr6	100359767	100359768	rs117086179	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large HDL particles	115,082 European ancestry individuals	NA	6q16.2		rs117086179-C	0.987543	2E-8		0.0993151	[0.065-0.134] unit decrease	NR [11722792] (imputed)	N
1350	chr6	100359767	100359768	rs117086179	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	6q16.2		rs117086179-C	0.987543	3E-8		0.0981177	[0.063-0.133] unit decrease	NR [11722792] (imputed)	N
1351	chr6	100443290	100443291	rs2397690	32121467	Adewuyi EO	2020-02-29	Genes (Basel)	Shared Molecular Genetic Mechanisms Underlie Endometriosis and Migraine Comorbidity.	Endometriosis or migraine	17,054 European and Japanese ancestry endometriosis cases, 29,208 European ancestry migraine cases, 191,858 European and Japanese ancestry controls, 172,931 European ancestry controls	NA	6q16.2	NR	rs2397690-T	NR	8E-6	(random effect)	1.05	NR	NR [6904914] (imputed)	N
1351	chr6	100471891	100471892	rs116889104	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	6q16.3	NR	rs116889104-?	NR	2E-8				Illumina [7760689] (imputed)	N
1351	chr6	100505347	100505348	rs12209443	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	6q16.3	NR	rs12209443-?	NR	6E-6	(Native Hawaiian)	0.6219	[NR] unit increase	Illumina [up to 11892802] (imputed)	N
1352	chr6	100555427	100555428	rs78794637	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	6q16.3		rs78794637-T	0.040287	6E-6		0.077154	[0.044-0.111] unit decrease	Affymetrix [15580782] (imputed)	N
1352	chr6	100597578	100597579	rs6924944	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6q16.3	PRDX2P4	rs6924944-A	NR	5E-11		0.0216325	[0.015-0.028] unit decrease	Affymetrix [321016] (imputed)	N
1352	chr6	100600096	100600097	rs17789218	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6q16.3	PRDX2P4	rs17789218-C	NR	4E-14		0.0247675	[0.018-0.031] unit decrease	Affymetrix [319769] (imputed)	N
1352	chr6	100600096	100600097	rs17789218	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	6q16.3	NR	rs17789218-C	NR	3E-18		0.0244	[0.019-0.03] unit decrease	Affymetrix [9000000] (imputed)	N
1352	chr6	100600096	100600097	rs17789218	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	6q16.3	NR	rs17789218-C	NR	5E-18		0.0243	[0.019-0.03] unit decrease	Affymetrix [9000000] (imputed)	N
1352	chr6	100600096	100600097	rs17789218	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	6q16.3	NR	rs17789218-C	NR	2E-19		0.0253	[0.02-0.031] unit decrease	Affymetrix [9000000] (imputed)	N
1352	chr6	100600096	100600097	rs17789218	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	6q16.3	NR	rs17789218-?		1E-13		0.0185965	[0.014-0.024] unit increase	Affymetrix [19400418] (imputed)	N
1352	chr6	100600096	100600097	rs17789218	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (computer use)	408,815 European ancestry individuals	NA	6q16.3	NR	rs17789218-?		4E-9		0.0150545	[0.01-0.02] unit decrease	Affymetrix [19400418] (imputed)	N
1352	chr6	100600096	100600097	rs17789218	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6q16.3		rs17789218-T	NR	4E-7		0.023	unit increase	Affymetrix [at least 7091467] (imputed)	N
1352	chr6	100600096	100600097	rs17789218	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6q16.3		rs17789218-T	0.749	1E-7	(EA)	0.025	unit increase	Affymetrix [at least 7091467] (imputed)	N
1352	chr6	100600096	100600097	rs17789218	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	265,204 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6q16.3	NR	rs17789218-T	NR	2E-6		0.017	unit increase	Affymetrix [at least 7091467] (imputed)	N
1352	chr6	100600096	100600097	rs17789218	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6q16.3		rs17789218-T	NR	7E-7		0.025	unit increase	Affymetrix [at least 7091467] (imputed)	N
1352	chr6	100600096	100600097	rs17789218	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6q16.3		rs17789218-T	0.749	3E-6	(EA)	0.025	unit increase	Affymetrix [at least 7091467] (imputed)	N
1352	chr6	100600096	100600097	rs17789218	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	265,204 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6q16.3	NR	rs17789218-T	NR	3E-9		0.023	unit increase	Affymetrix [at least 7091467] (imputed)	N
1352	chr6	100600096	100600097	rs17789218	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6q16.3		rs17789218-T	NR	6E-6		0.023	unit increase	Affymetrix [at least 7091467] (imputed)	N
1352	chr6	100600096	100600097	rs17789218	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	265,204 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6q16.3	NR	rs17789218-T	NR	2E-9		0.023	unit increase	Affymetrix [at least 7091467] (imputed)	N
1352	chr6	100600725	100600726	rs2503094	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6q16.3	PRDX2P4	rs2503094-T	NR	8E-21		0.0327577	[0.026-0.04] unit decrease	Affymetrix [321016] (imputed)	N
1352	chr6	100602752	100602753	rs9496567	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	6q16.3		rs9496567-A	NR	2E-10		0.0153	[0.011-0.02] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1352	chr6	100602752	100602753	rs9496567	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		6q16.3	MCHR2	rs9496567-G	0.756637	4E-9		0.00938815	[0.0063-0.0125] unit decrease	Affymetrix [12370749]	N
1352	chr6	100602752	100602753	rs9496567	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	6q16.3	MCHR2	rs9496567-G	0.756517	5E-9		0.0135535	[0.009-0.0181] unit increase	Affymetrix [NR] (imputed)	N
1352	chr6	100602752	100602753	rs9496567	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	6q16.3	MCHR2	rs9496567-G	0.756541	6E-13		0.0175328	[0.013-0.022] unit increase	Affymetrix [NR] (imputed)	N
1352	chr6	100602752	100602753	rs9496567	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	6q16.3	MCHR2	rs9496567-G	0.756444	3E-15		0.0191799	[0.014-0.024] unit increase	Affymetrix [NR] (imputed)	N
1352	chr6	100602752	100602753	rs9496567	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	6q16.3	MCHR2-AS1, SIM1	rs9496567-A	NR	9E-11	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1352	chr6	100602752	100602753	rs9496567	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	6q16.3	MCHR2-AS1, SIM1	rs9496567-A	NR	1E-9				Affymetrix, Illumina [NR] (imputed)	N
1352	chr6	100602752	100602753	rs9496567	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	6q16.3	MCHR2-AS1, SIM1	rs9496567-A	NR	8E-9				Affymetrix, Illumina [NR] (imputed)	N
1352	chr6	100602752	100602753	rs9496567	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	6q16.3	MCHR2-AS1, SIM1	rs9496567-A	NR	6E-10	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1352	chr6	100602752	100602753	rs9496567	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	6q16.3	MCHR2-AS1, SIM1	rs9496567-A	NR	6E-9	(EA)	1.259	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1352	chr6	100602752	100602753	rs9496567	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	6q16.3	MCHR2-AS1, SIM1	rs9496567-A	NR	5E-8		1.055	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1352	chr6	100610100	100610101	rs2503099	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	6q16.3	NA	rs2503099-A	0.8346	8E-20		0.0214	[0.017-0.026] unit decrease	NR [~ 27400000] (imputed)	N
1352	chr6	100610100	100610101	rs2503099	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	6q16.3	NR	rs2503099-A	0.8346	8E-20		0.0214	[0.017-0.026] unit decrease	NR [~ 27400000] (imputed)	N
1352	chr6	100613914	100613915	rs2503100	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	6q16.3	NR	rs2503100-A	0.8345	5E-25		0.0245	[0.02-0.029] unit decrease	NR [~ 27400000] (imputed)	N
1352	chr6	100615651	100615652	rs2073267	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6q16.3	RP3-344J20.1	rs2073267-G	NR	5E-31		0.042964	[0.036-0.05] unit increase	Affymetrix [319769] (imputed)	N
1352	chr6	100615651	100615652	rs2073267	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6q16.3	RP3-344J20.1	rs2073267-G	NR	4E-30		0.0422797	[0.035-0.05] unit increase	Affymetrix [319769] (imputed)	N
1352	chr6	100615651	100615652	rs2073267	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6q16.3	RP3-344J20.1	rs2073267-G	NR	7E-10		0.023137	[0.016-0.03] unit increase	Affymetrix [321114] (imputed)	N
1352	chr6	100615651	100615652	rs2073267	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6q16.3	RP3-344J20.1	rs2073267-G	NR	4E-12		0.0260904	[0.019-0.033] unit increase	Affymetrix [321169] (imputed)	N
1352	chr6	100615651	100615652	rs2073267	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6q16.3	NR	rs2073267-?	NR	9E-28				Affymetrix [~ 8270000] (imputed)	N
1352	chr6	100615651	100615652	rs2073267	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	6q16.3		rs2073267-?	NR	4E-25				NR [~ 8900000] (imputed)	N
1352	chr6	100615651	100615652	rs2073267	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	6q16.3	NR	rs2073267-G	0.17	1E-25		0.025	[0.02-0.03] unit increase	Affymetrix [2446094] (imputed)	N
1352	chr6	100615651	100615652	rs2073267	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	6q16.3	NR	rs2073267-G	0.17	5E-8				Affymetrix [2446094] (imputed)	N
1352	chr6	100619657	100619658	rs6908728	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	6q16.3	RP3-344J20.1	rs6908728-G	NR	1E-21		0.0370155	[0.029-0.045] unit decrease	Affymetrix [321788] (imputed)	N
1352	chr6	100620930	100620931	rs17185536	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	6q16.3		rs17185536-T	NR	5E-11		0.0178	[0.013-0.023] unit decrease	Affymetrix, Illumina [20536134] (imputed)	N
1352	chr6	100620930	100620931	rs17185536	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	6q16.3		rs17185536-T	NR	2E-10		0.0176	[0.012-0.023] unit decrease	Affymetrix, Illumina [20521447] (imputed)	N
1352	chr6	100620930	100620931	rs17185536	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6q16.3	RP3-344J20.1	rs17185536-T	NR	9E-15		0.0254029	[0.019-0.032] unit decrease	Affymetrix [319769] (imputed)	N
1352	chr6	100620930	100620931	rs17185536	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	6q16.3	RP3-344J20.1	rs17185536-T	NR	9E-15		0.0264492	[0.02-0.033] unit increase	Affymetrix [321788] (imputed)	N
1352	chr6	100620930	100620931	rs17185536	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6q16.3	RP3-344J20.1	rs17185536-T	NR	8E-19		0.029011	[0.023-0.035] unit increase	Affymetrix [321016] (imputed)	N
1352	chr6	100620930	100620931	rs17185536	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	6q16.3	intergenic	rs17185536-?	NR	4E-15		0.0234	[0.018-0.029] unit decrease	Affymetrix [5701386] (imputed)	N
1352	chr6	100620930	100620931	rs17185536	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	6q16.3	NR	rs17185536-T	0.244402	2E-14		0.00684451	[0.0049-0.0088] unit increase	Affymetrix [16582909] (imputed)	N
1352	chr6	100620930	100620931	rs17185536	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	6q16.3	NR	rs17185536-T	0.244255	3E-9		0.0068162	[0.0042-0.0095] unit increase	Affymetrix [16582621] (imputed)	N
1352	chr6	100620930	100620931	rs17185536	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	6q16.3	NR	rs17185536-T	0.244402	4E-6		0.0043396	[0.0022-0.0065] unit increase	Affymetrix [16582965] (imputed)	N
1352	chr6	100620930	100620931	rs17185536	30367059	Teumer A	2018-10-26	Nat Commun	Genome-wide analyses identify a role for SLC17A4 and AADAT in thyroid hormone regulation.	Free thyroxine concentration	49,269 European ancestry individuals	up to 22,383 European ancestry individuals	6q16.3	LOC728012	rs17185536-T	0.24	3E-20		0.071	[0.055-0.087] unit increase	Affymetrix, Illumina [8048941] (imputed)	N
1352	chr6	100620930	100620931	rs17185536	30297428	Jorgenson E	2018-10-08	Proc Natl Acad Sci U S A	Genetic variation in the SIM1 locus is associated with erectile dysfunction.	Erectile dysfunction	11,864 European ancestry cases, 1,016 Hispanic cases, 938 East Asian ancestry cases, 397 African American cases, 17,995 European ancestry controls, 1,954 Hispanic controls, 1,799 East Asian ancestry controls, 686 African American controls	2,783 European ancestry cases, 70 South Asian ancestry cases, 68 African British cases, 2 East Asian ancestry cases, 36 mixed and unknown ancestry cases, 206,975 European ancestry controls, 5,234 South Asian ancestry controls, 3,566 African British controls, 678 East Asian ancestry controls, 3,626 mixed and unknown ancestry controls	6q16.3	MCHR2, SIM1, PRDM13, CCNC, USP45	rs17185536-T	NR	2E-37		1.25	[NR]	Affymetrix [665000]	N
1352	chr6	100620930	100620931	rs17185536	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex interaction	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	6q16.3	SIM1	rs17185536-C	0.76	6E-6				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1352	chr6	100626147	100626148	rs761711	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6q16.3	RP3-344J20.1	rs761711-G	NR	6E-30		0.0320251	[0.027-0.038] unit decrease	Affymetrix [321016] (imputed)	N
1352	chr6	100626343	100626344	rs732194	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6q16.3	RP3-344J20.1	rs732194-T	NR	5E-20		0.0258398	[0.02-0.031] unit increase	Affymetrix [319769] (imputed)	N
1352	chr6	100626343	100626344	rs732194	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6q16.3	RP3-344J20.1	rs732194-T	NR	2E-19		0.0254143	[0.02-0.031] unit increase	Affymetrix [319769] (imputed)	N
1352	chr6	100626343	100626344	rs732194	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	6q16.3	RP3-344J20.1	rs732194-T	NR	9E-24		0.0295049	[0.024-0.035] unit decrease	Affymetrix [321788] (imputed)	N
1352	chr6	100626846	100626847	rs7756047	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6q16.3	RP3-344J20.1	rs7756047-G	NR	1E-8		0.039637	[0.026-0.053] unit increase	Affymetrix [319769] (imputed)	N
1352	chr6	100626846	100626847	rs7756047	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6q16.3	RP3-344J20.1	rs7756047-G	NR	2E-8		0.0389865	[0.025-0.053] unit increase	Affymetrix [319769] (imputed)	N
1352	chr6	100629077	100629078	rs57989773	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Triglycerides	429,011 European ancestry individuals	NA	6q16.3		rs57989773-C	0.24	4E-8		0.013	mmol/L decrease	NR [NR] (imputed)	N
1352	chr6	100629077	100629078	rs57989773	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	6q16.3		rs57989773-C	0.24	7E-14				NR [NR] (imputed)	N
1352	chr6	100629077	100629078	rs57989773	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	6q16.3		rs57989773-C	0.24	5E-12		0.012	% increase	NR [NR] (imputed)	N
1352	chr6	100629077	100629078	rs57989773	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6q16.3	NR	rs57989773-?	NR	1E-10				Affymetrix [~ 8270000] (imputed)	N
1352	chr6	100629077	100629078	rs57989773	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	6q16.3		rs57989773-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1352	chr6	100629077	100629078	rs57989773	30583798	Bovijn J	2018-12-21	Am J Hum Genet	GWAS Identifies Risk Locus for Erectile Dysfunction and Implicates Hypothalamic Neurobiology and Diabetes in Etiology.	Erectile dysfunction	6,175 European ancestry male cases, 217,630 European ancestry male controls	NA	6q16.3	MCHR2	rs57989773-C	0.24	6E-14		1.2	NR	Affymetrix, Illumina [at least 807411] (imputed)	N
1352	chr6	100629460	100629461	rs6937293	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6q16.3	NR	rs6937293-?	NR	6E-19				Affymetrix [~ 8270000] (imputed)	N
1353	chr6	100727702	100727703	rs34260097	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	6q16.3	SIM1	rs34260097-T	0.776056	3E-26		0.0178193	[0.015-0.021] unit decrease	Affymetrix [12370749]	N
1353	chr6	100744133	100744134	rs13199764	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	6q16.3		rs13199764-?	NR	6E-14				NR [~ 8900000] (imputed)	N
1353	chr6	100756686	100756687	rs2841307	20889312	Wang KS	2010-10-01	Schizophr Res	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	6q16.3	NR	rs2841307-?	NR	1E-6		1.3621	[NR]	Affymetrix [722112]	N
1353	chr6	100760169	100760170	rs13196561	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	6q16.3	SIM1, MCHR2	rs13196561-C	0.78	8E-12		0.04	[0.028-0.052] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
1353	chr6	100791266	100791267	rs1395118	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Streptococcus)	1,068 Japanese ancestry individuals	NA	6q16.3	intergenic	rs1395118-G	0.09	9E-6		0.488	[0.27-0.7] unit decrease	Illumina [6380737] (imputed)	N
1354	chr6	100811532	100811533	rs17792983	27479909	Hyde CL	2016-08-01	Nat Genet	Identification of 15 genetic loci associated with risk of major depression in individuals of European descent.	Major depressive disorder	84,847 European ancestry cases, 241,266 European ancestry controls	45,773 European ancestry cases, 106,354 European ancestry controls	6q16.3	MCHR2, SIM1	rs17792983-T	0.305209	6E-8		0.03	[0.016-0.044] unit decrease	Illumina [1220000] (imputed)	N
1354	chr6	100816110	100816111	rs13209418	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	6q16.3		rs13209418-?	NR	8E-10				NR [~ 8900000] (imputed)	N
1354	chr6	100816476	100816477	rs13209911	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	6q16.3	NR	rs13209911-T	0.129359	7E-9		0.0267703	[0.018-0.036] unit increase	NR [19129689] (imputed)	N
1354	chr6	100825709	100825710	rs9403716	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Irritable mood	366,726 European ancestry individuals	NA	6q16.3	SIM1	rs9403716-A	0.227116	5E-9		5.84	z score increase	NR [~ 10847151] (imputed)	N
1354	chr6	100827833	100827834	rs17060460	32060260	Campos AI	2020-02-14	Nat Commun	Insights into the aetiology of snoring from observational and genetic investigations in the UK Biobank.	Snoring	61,792 British ancestry female cases, 156,554 British ancestry female controls	NA	6q16.3	NR	rs17060460-A	NR	1E-8		0.00926	[0.0061-0.0124] unit decrease	NR [11010159] (imputed)	N
1354	chr6	100827833	100827834	rs17060460	32060260	Campos AI	2020-02-14	Nat Commun	Insights into the aetiology of snoring from observational and genetic investigations in the UK Biobank.	Snoring	152,302 British ancestry cases, 256,015 British ancestry controls	NA	6q16.3	NR	rs17060460-A	NR	1E-8		0.00709136	[0.0046-0.0095] unit decrease	NR [11010159] (imputed)	N
1354	chr6	100827833	100827834	rs17060460	32060260	Campos AI	2020-02-14	Nat Commun	Insights into the aetiology of snoring from observational and genetic investigations in the UK Biobank.	Snoring	151,836 British ancestry cases, 255,230 British ancestry controls	NA	6q16.3	NR	rs17060460-A	NR	2E-7	(adjusted for BMI)	0.00638	[0.004-0.0088] unit decrease	NR [11010159] (imputed)	N
1354	chr6	100827833	100827834	rs17060460	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Snoring	359,916 European ancestry individuals	NA	6q16.3	NR	rs17060460-G	0.2256	1E-8		1.03	[1.02-1.04]	Affymetrix, Illumina [10862568] (imputed)	N
1354	chr6	100838123	100838124	rs41318039	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		SIM1	rs41318039-?	NR	2E-8	(male)	2.48578	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1354	chr6	100838123	100838124	rs41318039	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		SIM1	rs41318039-?	NR	2E-8		1.96795	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1354	chr6	100845428	100845429	rs9376959	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	6q16.3	NR	rs9376959-T	0.144594	1E-12		0.0311684	[0.023-0.04] unit decrease	NR [19129689] (imputed)	N
1354	chr6	100845643	100845644	rs9376960	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	6q16.3		rs9376960-?	NR	8E-8				NR [~ 8900000] (imputed)	N
1354	chr6	100848870	100848871	rs34979551	34054130	Bralten J	2021-05-30	Neuropsychopharmacology	Genetic underpinnings of sociability in the general population.	Sociability score	342,461 European ancestry individuals	NA	6q16.3	SIM1	rs34979551-G	NR	1E-8		0.01786	unit increase	Affymetrix [9327396] (imputed)	N
1354	chr6	100848870	100848871	rs34979551	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	6q16.3	SIM1	rs34979551-A	0.127858	4E-8		5.51	z score increase	NR [10847151] (imputed)	N
1354	chr6	100862050	100862051	rs17060534	28077804	Ben-Avraham D	2017-01-10	Aging (Albany NY)	The complex genetics of gait speed: genome-wide meta-analysis approach.	Gait speed in old age	31,478 European ancestry older adults	2,588 European ancestry older adults	6q16.3	SIM1	rs17060534-?	NR	8E-6		0.014	[0.0079-0.0201] m/sec decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1354	chr6	100878266	100878267	rs3798498	30279531	Baselmans BML	2018-10-02	Sci Rep	A genetic perspective on the relationship between eudaimonic -and hedonic well-being.	Eudaimonic well-being	108,154 British ancestry individuals	NA	6q16.3	NR	rs3798498-T	0.6062	2E-6		4.76594	[NR] z score decrease	Affymetrix [~ 8600000] (imputed)	N
1354	chr6	100888407	100888408	rs767933	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	6q16.3		rs767933-C	NR	2E-8		0.0098	[0.0065-0.0131] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
1354	chr6	100888407	100888408	rs767933	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	6q16.3		rs767933-C	NR	3E-8		0.011	[0.0071-0.0149] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1354	chr6	100890990	100890991	rs241812	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	150,266 East Asian ancestry individuals	NA	6q16.3		rs241812-G	0.568494	6E-10		0.0177299	[0.012-0.023] unit decrease	Illumina [13478778] (imputed)	N
1354	chr6	100890990	100890991	rs241812	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	6q16.3		rs241812-G	NR	1E-9		0.0104	[0.0071-0.0137] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
1354	chr6	100890990	100890991	rs241812	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Glomerular filtration rate	143,658 Japanese ancestry individuals	NA	6q16.3	SIM1	rs241812-?	NR	2E-9		0.02278	[0.015-0.03] unit increase novel	Illumina [6108953] (imputed)	N
1354	chr6	100890990	100890991	rs241812	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Creatinine levels	142,097 Japanese ancestry individuals	NA	6q16.3	SIM1	rs241812-?	NR	5E-9		0.02155	[0.014-0.029] unit decrease novel	Illumina [6108953] (imputed)	N
1354	chr6	100894586	100894587	rs1857859	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	6q16.3	SIM1	rs1857859-A	0.3107	8E-9		0.0019	[0.0013-0.0025] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
1354	chr6	100904187	100904188	rs241809	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	6q16.3	NR	rs241809-G	0.811233	2E-13		0.01727	[0.013-0.022] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
1354	chr6	100904559	100904560	rs140839696	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris color (L* coordinate)	329 South Asian ancestry individuals		6q16.3	SIM1	rs140839696-C	0.0213943	4E-6		1.36745	[0.8-1.94] unit increase	Illumina [640625] (imputed)	N
1354	chr6	100909397	100909398	rs4839780	34054130	Bralten J	2021-05-30	Neuropsychopharmacology	Genetic underpinnings of sociability in the general population.	Sociability score	342,461 European ancestry individuals	NA	6q16.3	SIM1	rs4839780-C	NR	1E-8		0.01202	unit increase	Affymetrix [9327396] (imputed)	N
1354	chr6	100909652	100909653	rs3798483	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q16.3	NR	rs3798483-T	0.819991	3E-12				Affymetrix, Illumina [24653286] (imputed)	N
1354	chr6	100909652	100909653	rs3798483	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q16.3	NR	rs3798483-T	0.819493	2E-11				Affymetrix, Illumina [24558453] (imputed)	N
1354	chr6	100909652	100909653	rs3798483	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	6q16.3	NR	rs3798483-T	0.809639	8E-13		0.016821	[0.012-0.021] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
1355	chr6	100936764	100936765	rs7766596	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	6q16.3		rs7766596-T	NR	2E-8		0.0138	[0.0091-0.0185] unit decrease	Affymetrix, Illumina [20538307] (imputed)	N
1355	chr6	100944927	100944928	rs62420451	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD24 on CD24+ CD27+ B cell	3,654 Sardinian (founder/genetic isolate) ancestry individuals	NA	6q16.3		rs62420451-C	0.04095	7E-9		0.3648	[0.24-0.49] unit decrease	Illumina [18237589] (imputed)	N
1355	chr6	100953147	100953148	rs240764	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Depression	at least 5,919 European ancestry cases, at least 130,691 European ancestry controls	634,037 European ancestry cases, 1,308,690 European ancestry controls	6q16.3	ASCC3	rs240764-G	0.4652	2E-15		0.01793107	[0.013-0.023] unit decrease	NR [9417325] (imputed)	N
1355	chr6	100953147	100953148	rs240764	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	6q16.3	ASCC3, SIM1	rs240764-A	0.47527	2E-8		5.605	z score increase	Illumina [18485882] (imputed)	N
1355	chr6	100957343	100957344	rs240768	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Sub-cortical grey matter volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	6q16.3	ASCC3	rs240768-?		2E-6				Illumina [4322238] (imputed)	N
1355	chr6	100957343	100957344	rs240768	22566634	Benjamin DJ	2012-05-07	Proc Natl Acad Sci U S A	The genetic architecture of economic and political preferences.	Economic and political preferences (immigration/crime)	9,617 European ancestry individuals	NA	6q16.3	ASCC3	rs240768-T	NR	2E-6		0.267	[0.16-0.38] unit increase	Illumina [628922]	N
1355	chr6	100974763	100974764	rs7766621	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	6q16.3		rs7766621-C	NR	3E-11		0.0175	[0.012-0.023] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
1355	chr6	100977939	100977940	rs4461738	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	6q16.3	NR	rs4461738-C	0.464582099701194	9E-10		0.005637865	[0.0038-0.0074] unit increase	NR [NR]	N
1355	chr6	100977939	100977940	rs4461738	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	6q16.3	NR	rs4461738-C	0.464582099701194	1E-9		0.0068655917	[0.0046-0.0091] unit increase	NR [NR]	N
1355	chr6	100977939	100977940	rs4461738	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	6q16.3	NR	rs4461738-C	0.464582099701194	1E-9		0.008925479	[0.006-0.0118] unit increase	NR [NR]	N
1355	chr6	100977939	100977940	rs4461738	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	6q16.3	NR	rs4461738-C	0.464582099701194	3E-9		0.007290558	[0.0049-0.0097] unit increase	NR [NR]	N
1355	chr6	100977939	100977940	rs4461738	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	6q16.3	NR	rs4461738-C	0.464582099701194	1E-9		0.0057097394	[0.0039-0.0075] unit increase	NR [NR]	N
1355	chr6	100978569	100978570	rs12660725	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	6q16.3		rs12660725-C	0.525	6E-19		0.011	[0.009-0.013] unit decrease	NR [NR] (imputed)	N
1355	chr6	100984105	100984106	rs240788	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	6q16.3		rs240788-?	NR	7E-9				NR [~ 8900000] (imputed)	N
1355	chr6	100987008	100987009	rs12206564	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	6q16.3		rs12206564-?	NR	6E-26				NR [~ 8900000] (imputed)	N
1355	chr6	101012186	101012187	rs240769	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Anxiety	at least 23,606 European ancestry cases, at least 113,351 European ancestry controls	624,615 European ancestry cases, 1,310,854 European ancestry controls	6q16.3	ASCC3	rs240769-A	0.4036	1E-9		0.01441477	[0.0091-0.0197] unit decrease	NR [9417325] (imputed)	N
1355	chr6	101012186	101012187	rs240769	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	6q16.3	NR	rs240769-A	NR	2E-8		5.635	z score decrease	Affymetrix [10847151] (imputed)	N
1355	chr6	101012186	101012187	rs240769	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	6q16.3	ASCC3	rs240769-A	0.410587	5E-9		5.84	z score decrease	NR [10847151] (imputed)	N
1356	chr6	101059628	101059629	rs240110	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	6q16.3	intergenic	rs240110-T	0.45154000000000005	2E-7		5.245	z score increase	Illumina [18485882] (imputed)	N
1356	chr6	101090376	101090377	rs239245	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	6q16.3	ASCC3	rs239245-A	0.5332	2E-8		0.01124458	[0.0073-0.0152] unit decrease	Affymetrix [11514654] (imputed)	N
1356	chr6	101127212	101127213	rs180963	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6q16.3	NR	rs180963-?	NR	5E-11				Affymetrix [~ 8270000] (imputed)	N
1356	chr6	101127212	101127213	rs180963	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	6q16.3		rs180963-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1356	chr6	101134076	101134077	rs239198	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	6q16.3	SIM1, ASCC3	rs239198-T	0.46	3E-8		0.03	[0.02-0.04] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
1356	chr6	101153781	101153782	rs6907240	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	6q16.3	NA	rs6907240-T	0.5281	2E-10		0.0122	[0.0085-0.0159] unit decrease	NR [~ 27400000] (imputed)	N
1356	chr6	101153906	101153907	rs6922219	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking initiation (ever regular vs never regular)	up to 433,216 European ancestry individuals	NA	6q16.3	ASCC3	rs6922219-C	0.47	2E-8		0.0128	[0.0083-0.0173] unit increase	Illumina [~ 250000] (imputed)	N
1356	chr6	101156805	101156806	rs12209887	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	6q16.3	NA	rs12209887-A	0.463	2E-11		0.0114	[0.0081-0.0147] unit increase	NR [~ 27400000] (imputed)	N
1357	chr6	101212000	101212001	rs9373590	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	6q16.3	NR	rs9373590-A	0.5078	2E-11		1.041	[1.03-1.05]	Affymetrix, Illumina [NR] (imputed)	N
1357	chr6	101246009	101246010	rs6932158	30804566	Lane JM	2019-02-25	Nat Genet	Biological and clinical insights from genetics of insomnia symptoms.	Insomnia symptoms (never/rarely vs. usually)	129,270 European ancestry cases, 108,357 European ancestry controls	17,140 European ancestry cases, 61,850 European ancestry controls	6q16.3	ASCC3	rs6932158-C	0.49099899999999996	9E-9		1.03	[1.01-1.04]	Affymetrix [14661600] (imputed)	N
1357	chr6	101246009	101246010	rs6932158	30804566	Lane JM	2019-02-25	Nat Genet	Biological and clinical insights from genetics of insomnia symptoms.	Insomnia symptoms (never/rarely vs. sometimes/usually)	345,022 European ancestry cases, 108,357 European ancestry controls	17,140 European ancestry cases, 61,850 European ancestry controls	6q16.3	ASCC3	rs6932158-C	0.49099899999999996	7E-6		1.03	[1.01-1.04]	Affymetrix [14661600] (imputed)	N
1357	chr6	101246009	101246010	rs6932158	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	6q16.3		rs6932158-?	NR	8E-8				NR [~ 8900000] (imputed)	N
1357	chr6	101274688	101274689	rs17672112	29147026	Chen CH	2017-11-16	Sci Rep	Leveraging genome characteristics to improve gene discovery for putamen subcortical brain structure.	Putamen volume	12,596 European ancestry individuals	NA	6q16.3	ASCC3	rs17672112-?	NR	8E-6		33.573	[18.87-48.28] mm3 decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1357	chr6	101308420	101308421	rs11963911	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	6q16.3		rs11963911-C	NR	2E-8		0.0129	[0.0084-0.0174] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
1357	chr6	101308420	101308421	rs11963911	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Total cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	6q16.3	ASCC3	rs11963911-?		3E-8		0.0199	[0.013-0.027] unit decrease	Illumina [31500000] (imputed)	N
1358	chr6	101329172	101329173	rs12530388	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking initiation	842,717 European ancestry individuals	NA	6q16.3	ASCC3	rs12530388-A		3E-8		1.019	[NR]	Affymetrix [up to 79000000] (imputed)	N
1358	chr6	101329172	101329173	rs12530388	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	6q16.3	NR	rs12530388-C	0.511	6E-13		0.01836168	[0.013-0.023] unit decrease	NR [~ 10000000] (imputed)	N
1358	chr6	101339399	101339400	rs7771570	31926635	Coleman JRI	2019-11-01	Biol Psychiatry	The Genetics of the Mood Disorder Spectrum: Genome-wide Association Analyses of More Than 185,000 Cases and 439,000 Controls.	Bipolar disorder or major depressive disorder	164,933 European ancestry major depressive disorder cases, 20,352 European ancestry bipolar disorder cases, 439,741 European ancestry controls	NA	6q16.3	NR	rs7771570-C	NR	1E-9		1.0309278		NR [NR] (imputed)	N
1358	chr6	101339399	101339400	rs7771570	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	6q16.3	ASCC3	rs7771570-T	0.5123	1E-10		0.015188187	[0.011-0.02] unit decrease	Affymetrix [11515109] (imputed)	N
1358	chr6	101347445	101347446	rs9390702	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	6q16.3		rs9390702-T	NR	8E-9		0.0129	[0.0086-0.0172] unit increase	Affymetrix, Illumina [20528270] (imputed)	N
1358	chr6	101387303	101387304	rs7758630	30718901	Howard DM	2019-02-04	Nat Neurosci	Genome-wide meta-analysis of depression identifies 102 independent variants and highlights the importance of the prefrontal brain regions.	Depression	118,811 European ancestry cases, 327,427 European ancestry controls, 127,552 cases, 233,763 controls	414,055 European ancestry cases, 892,299 European ancestry controls	6q16.3	NR	rs7758630-T	0.5949	8E-14		1.0162601	[1.01-1.02]	NR [8098588] (imputed)	N
1358	chr6	101395406	101395407	rs11969893	22566634	Benjamin DJ	2012-05-07	Proc Natl Acad Sci U S A	The genetic architecture of economic and political preferences.	Economic and political preferences (immigration/crime)	9,617 European ancestry individuals	NA	6q16.3	intergenic	rs11969893-G	NR	4E-6		0.324	[0.19-0.46] unit increase	Illumina [628922]	N
1358	chr6	101424224	101424225	rs138478119	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD24 on memory B cell	3,653 Sardinian (founder/genetic isolate) ancestry individuals	NA	6q16.3		rs138478119-T	0.02057	8E-9		0.5101	[0.34-0.68] unit decrease	Illumina [18237721] (imputed)	N
1358	chr6	101424224	101424225	rs138478119	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD24 on IgD+ CD24+ B cell	3,655 Sardinian (founder/genetic isolate) ancestry individuals	NA	6q16.3		rs138478119-T	0.02056	9E-9		0.5067	[0.33-0.68] unit decrease	Illumina [18237790] (imputed)	N
1358	chr6	101427000	101427001	rs4840169	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	6q16.3		rs4840169-A	NR	4E-8		0.0116	[0.0075-0.0157] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
1359	chr6	101460298	101460299	rs7769142	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	6q16.3	NR	rs7769142-C	0.506	4E-17		0.00909499	[0.007-0.0112] unit decrease	NR [9732723] (imputed)	N
1359	chr6	101460298	101460299	rs7769142	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	6q16.3	NR	rs7769142-C	0.504	3E-11		0.00970617	[0.0068-0.0126] unit increase	NR [9732723] (imputed)	N
1359	chr6	101477124	101477125	rs62419262	30796134	Soderholm M	2019-02-22	Neurology	Genome-wide association meta-analysis of functional outcome after ischemic stroke.	3-month functional outcome in ischaemic stroke (modified Rankin score)	6,165 European and unknown ancestry individuals	NA	6q16.3	intergenic	rs62419262-G	0.57	3E-6	(adjusted for severity)	1.1904762	[1.12-1.26]	Affymetrix, Illumina [~ 8500000] (imputed)	N
1360	chr6	101674289	101674290	rs2797369	22797727	Okada Y	2012-07-15	Nat Genet	Meta-analysis identifies multiple loci associated with kidney function-related traits in east Asian populations.	Renal function-related traits (eGRFcrea)	42,451 East Asian, South Asian, and South East Asian ancestry individuals	19,636 East Asian ancestry individuals	6q16.3	GRIK2	rs2797369-T	0.66	1E-7		0.0042	[0.0026-0.0058] ml/min/1.73m2 decrease	Affymetrix, Illumina [2353587] (imputed)	N
1361	chr6	101754992	101754993	rs283228	27149984	Degenhardt F	2016-05-05	Hum Mol Genet	Genome-wide association study of serum coenzyme Q10 levels identifies susceptibility loci linked to neuronal diseases.	Coenzyme Q10 levels	up to 1,300 European ancestry individuals	NA	6q16.3	Intergenic	rs283228-C		5E-6		0.03	[0.017-0.043] unit decrease	Affymetrix, Illumina [up to 17017474] (imputed)	N
1361	chr6	101761017	101761018	rs9485491	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6q16.3	GRIK2	rs9485491-T	NR	1E-8		0.0394708	[0.026-0.053] unit increase	Affymetrix [321114] (imputed)	N
1361	chr6	101761017	101761018	rs9485491	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6q16.3	GRIK2	rs9485491-T	NR	3E-9		0.0410064	[0.027-0.055] unit increase	Affymetrix [321169] (imputed)	N
1361	chr6	101838880	101838881	rs1485834	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6q16.3	ASCC3	rs1485834-?	NR	6E-6	(carnosine)	0.6715908	[0.38-0.96] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1361	chr6	101839862	101839863	rs6930752	28360221	Boger CA	2017-03-30	J Am Soc Nephrol	NFAT5 and SLC4A10 Loci Associate with Plasma Osmolality.	Blood osmolality (transformed sodium)	45,889 European ancestry individuals, up to 8,765 Asian Indian ancestry individuals, up to 7,215 African ancestry individuals	17,637 European ancestry individuals	6q16.3	NR	rs6930752-A	0.64	9E-6	(Asian)	0.08	[0.047-0.113] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1363	chr6	102014101	102014102	rs6905321	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	6q16.3		rs6905321-A	NR	2E-8		0.0122	[0.0079-0.0165] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1363	chr6	102043801	102043802	rs112904378	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder	29,475 European ancestry cases, 63,482 European ancestry controls	NA	6q16.3	NR	rs112904378-A	0.0353645	9E-6		1.067	[1.04-1.1]	Affymetrix [7791636] (imputed)	N
1363	chr6	102053813	102053814	rs2224202	29497042	Verweij N	2018-03-01	Nat Commun	Genetic study links components of the autonomous nervous system to heart-rate profile during exercise.	Heart rate response to recovery post exercise (20 sec)	5,4137 European ancestry individuals, 1,744 Asian individuals, 1,445 African individuals, 468 admixed individuals, 1,024 individuals	NA	6q16.3	GRIK2	rs2224202-G	0.806927	6E-9		0.0432904	[0.029-0.058] unit decrease	Affymetrix [509255] (imputed)	N
1364	chr6	102112524	102112525	rs1337415	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	6q16.3	Intergenic	rs1337415-A	0.2441	7E-11	(MTAG)	0.0136	[0.0095-0.0177] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1364	chr6	102112524	102112525	rs1337415	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	6q16.3	Intergenic	rs1337415-A	0.2441	5E-10		0.0141	[0.0096-0.0186] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1365	chr6	102327302	102327303	rs4840200	34224794	Wang K	2021-07-02	Prog Neuropsychopharmacol Biol Psychiatry	Genome-wide association study identified INSC gene associated with Trail Making Test Part A and Alzheimer's disease related cognitive phenotypes.	Disability level (impaired activities of daily living)	684 European ancestry individuals, 17 Hispanic individuals, 36 African American individuals, 18 individuals	NA	6q16.3		rs4840200-C	0.03	1E-6		4.909	[2.94-6.87] unit increase	NR [534934]	N
1365	chr6	102332619	102332624	rs552586198	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	6q16.3	GRIK2	rs552586198-A	0.002	7E-6		0.4665	[0.26-0.67] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1365	chr6	102355766	102355767	rs2518210	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	CAG-448 sp000433415 abundance in stool	5,959 Finnish ancestry individuals	NA	6q16.3		rs2518210-A	0.0109225	4E-8		0.232207	[0.15-0.32] unit increase	Illumina [7980478] (imputed)	N
1365	chr6	102355866	102355867	rs12207601	19260141	Zemunik T	2009-02-01	Croat Med J	Genome-wide association study of biochemical traits in Korcula Island, Croatia.	Biochemical measures	898 Korculan (founder/genetic isolate) individuals	NA	6q16.3	GRIK2	rs12207601-G	0.16	2E-6	(fibrinogen)	0.26	[0.15-0.37] g/L decrease	Illumina [316730]	N
1366	chr6	102409494	102409495	rs6923395	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	6q16.3	NR	rs6923395-?	NR	6E-6				Affymetrix [NR]	N
1367	chr6	102526506	102526507	rs12190843	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	6q16.3	Intergenic	rs12190843-?	NR	8E-6		1.656	[NR]	Affymetrix [492217] (imputed)	N
1368	chr6	102639790	102639791	rs72956174	30954325	Kamboh MI	2019-03-11	Neurobiol Aging	Population-based genome-wide association study of cognitive decline in older adults free of dementia: identification of a novel locus for the attention domain.	Age-related cognitive decline (language) (slope of z-scores)	1,145 European ancestry individuals	NA	6q16.3	GRIK2, NONE	rs72956174-C	0.16	8E-6		0.24	unit increase	Illumina [5600000] (imputed)	N
1369	chr6	102885629	102885630	rs6571017	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	6q16.3	NR	rs6571017-?	NR	2E-9				Affymetrix [NR]	N
1369	chr6	102886642	102886643	rs1416280	25199915	Broer L	2014-09-08	J Gerontol A Biol Sci Med Sci	GWAS of longevity in CHARGE consortium confirms APOE and FOXO3 candidacy.	Longevity (90 years and older)	6,036 European ancestry cases, 3,757 European ancestry controls	NA	6q16.3	GRIK2	rs1416280-C	0.75	5E-8		1.24	1.15-1.34	Affymetrix, Illumina [2500000] (imputed)	N
1370	chr6	102970749	102970750	rs117303720	30796134	Soderholm M	2019-02-22	Neurology	Genome-wide association meta-analysis of functional outcome after ischemic stroke.	3-month functional outcome in ischaemic stroke (modified Rankin score)	3,830 European and unknown ancestry modified Rankin score 0-2 cases, 2,335 European and unknown ancestry modified Rankin score 3-6 cases	NA	6q16.3	LOC100996860	rs117303720-A	0.065	6E-6	(adjusted for severity)	1.6	[1.4-1.8]	Affymetrix, Illumina [~ 8500000] (imputed)	N
1370	chr6	102971245	102971246	rs17430337	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6q16.3	GRIK2	rs17430337-A	0.015	5E-6	(NEFA )	0.02	[NR] mmol/L increase	Illumina [899892]	N
1371	chr6	103052614	103052615	rs11758716	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6q16.3	NR	rs11758716-C	0.01394	1E-8	(AKR1C2)	1.075	NR unit increase	Illumina [1671387] (imputed)	N
1373	chr6	103286481	103286482	rs72971709	26030696	Cho MH	2015-06-01	Am J Respir Crit Care Med	A Genome-Wide Association Study of Emphysema and Airway Quantitative Imaging Phenotypes.	Emphysema imaging phenotypes	5,385 European ancestry chronic obstructive pulmonary disease cases, 901 African American chronic obstructive pulmonary disease cases, 3,613 European ancestry controls, 2,132 African American controls	NA	6q16.3	GRIK2	rs72971709-A	NR	3E-7	(%LAA-950, Cases)	0.38	[-0.2276-0.9876] unit increase	Illumina [7600000] (imputed)	N
1373	chr6	103322775	103322776	rs117101753	34020725	Reddy JS	2021-05-21	Acta Neuropathol Commun	Genome-wide analysis identifies a novel LINC-PINT splice variant associated with vascular amyloid pathology in Alzheimer's disease.	Cerebral amyloid angiopathy x APOEe4 status interaction in Alzheimer's disease	534 European ancestry APOEe4 carriers, 287 European ancestry APOEe4 non-carriers	NA		GRIK2	rs117101753-A	0.03	1E-5				Illumina [1679420] (imputed)	N
1373	chr6	103399249	103399250	rs78173910	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6q16.3	NR	rs78173910-A	0.0122	1E-8	(PRTN3)	0.065	NR unit increase	Illumina [1671387] (imputed)	N
1374	chr6	103469368	103469369	rs9404300	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Paracentral lobule volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	6q16.3	NR	rs9404300-?		5E-6				Illumina [4322238] (imputed)	N
1375	chr6	103556226	103556227	rs9404319	29594489	Apewokin S	2018-03-28	Support Care Cancer	Host genetic susceptibility to Clostridium difficile infections in patients undergoing autologous stem cell transplantation: a genome-wide association study.	Clostridium difficile infection in multiple myeloma	57 European ancestry cases, 589 European ancestry controls	NA	6q16.3	NR	rs9404319-?		2E-6				Illumina [892589]	N
1376	chr6	103784117	103784118	rs148193678	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Systolic blood pressure (baseline)	5,304 African American individuals, 13,137 European ancestry individuals, 1,317 Hispanic individuals, 1,439 admixed individuals, 703 Chinese ancestry individuals	6,500 African American individuals, 2,451 European ancestry individuals, 2,869 Hispanic individuals	6q16.3	NR	rs148193678-A	0.0106	5E-7		13.65	[8.35-18.95] mmHg increase	Affymetrix, Illumina [NR] (imputed)	N
1376	chr6	103784117	103784118	rs148193678	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Systolic blood pressure (baseline)	5,304 African American individuals	6,500 African American individuals	6q16.3	NR	rs148193678-A	0.0106	5E-7		13.65	[8.35-18.95] mmHg increase	Affymetrix, Illumina [NR] (imputed)	N
1376	chr6	103799045	103799046	rs994988	23362303	Wu JH	2013-01-29	Circ Cardiovasc Genet	Genome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortium.	Palmitic acid (16:0) levels	8,961 European ancestry individuals		6q16.3	GRIK2	rs994988-T	NR	2E-7		0.1395	unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1377	chr6	103810002	103810003	rs79423885	25533491	Rautanen A	2014-12-18	Lancet Respir Med	Genome-wide association study of survival from sepsis due to pneumonia: an observational cohort study.	Sepsis from pneumonia (survival)	359 European ancestry non-survivor cases, 1,194 European ancestry survivor cases	106 European ancestry non-survivor cases, 432 European ancestry survivor cases	6q16.3	intergenic	rs79423885-?	NR	2E-6		1.89	[NR]	Affymetrix, Illumina [5888277] (imputed)	N
1378	chr6	104010580	104010581	rs9391056	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	6q16.3		rs9391056-G	0.4652	1E-5		1.22		NR [11110260] (imputed)	N
1378	chr6	104015134	104015135	rs4573114	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	6q16.3		rs4573114-G	0.4652	1E-5		1.22		NR [11110260] (imputed)	N
1378	chr6	104015973	104015974	rs10457116	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	6q16.3		rs10457116-T	0.4653	1E-5		1.22		NR [11110260] (imputed)	N
1378	chr6	104015998	104015999	rs10457982	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	6q16.3		rs10457982-G	0.4653	1E-5		1.22		NR [11110260] (imputed)	N
1378	chr6	104016138	104016139	rs9322752	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	6q16.3		rs9322752-C	0.4672	6E-6		1.229		NR [11110260] (imputed)	N
1378	chr6	104016806	104016807	rs6571121	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	6q16.3		rs6571121-A	0.4653	1E-5		1.22		NR [11110260] (imputed)	N
1378	chr6	104017226	104017227	rs4365964	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	6q16.3		rs4365964-T	0.4646	9E-6		1.221		NR [11110260] (imputed)	N
1378	chr6	104017257	104017258	rs4365965	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	6q16.3		rs4365965-T	0.4646	9E-6		1.221		NR [11110260] (imputed)	N
1378	chr6	104017353	104017354	rs4555956	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	6q16.3		rs4555956-A	0.4628	5E-6		1.227		NR [11110260] (imputed)	N
1378	chr6	104017628	104017629	rs7765311	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	6q16.3		rs7765311-G	0.4627	7E-6		1.225		NR [11110260] (imputed)	N
1378	chr6	104017635	104017636	rs7766547	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	6q16.3		rs7766547-C	0.4626	9E-6		1.221		NR [11110260] (imputed)	N
1378	chr6	104017852	104017853	rs7766897	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	6q16.3		rs7766897-C	0.4629	7E-6		1.224		NR [11110260] (imputed)	N
1378	chr6	104018095	104018096	rs10872772	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	6q16.3		rs10872772-C	0.463	7E-6		1.224		NR [11110260] (imputed)	N
1378	chr6	104018397	104018399	rs138759478	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	6q16.3		rs138759478-GTT	0.4652	9E-6		1.22		NR [11110260] (imputed)	N
1378	chr6	104019163	104019164	rs4498413	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	6q16.3		rs4498413-T	0.4633	8E-6		1.222		NR [11110260] (imputed)	N
1378	chr6	104019229	104019230	rs4266523	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	6q16.3		rs4266523-G	0.4629	7E-6		1.224		NR [11110260] (imputed)	N
1378	chr6	104019359	104019360	rs4339502	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	6q16.3		rs4339502-A	0.4629	7E-6		1.224		NR [11110260] (imputed)	N
1378	chr6	104019449	104019450	rs6571122	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	6q16.3		rs6571122-T	0.4629	7E-6		1.224		NR [11110260] (imputed)	N
1378	chr6	104019565	104019566	rs6939107	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	6q16.3		rs6939107-C	0.4629	7E-6		1.224		NR [11110260] (imputed)	N
1378	chr6	104020658	104020659	rs4346882	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	6q16.3		rs4346882-A	0.463	7E-6		1.223		NR [11110260] (imputed)	N
1378	chr6	104020764	104020765	rs4299869	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	6q16.3		rs4299869-C	0.463	7E-6		1.223		NR [11110260] (imputed)	N
1378	chr6	104020813	104020814	rs4496836	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	6q16.3		rs4496836-T	0.463	7E-6		1.223		NR [11110260] (imputed)	N
1378	chr6	104021140	104021141	rs4352716	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	6q16.3		rs4352716-A	0.463	7E-6		1.223		NR [11110260] (imputed)	N
1378	chr6	104021436	104021437	rs7754349	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	6q16.3		rs7754349-G	0.463	7E-6		1.223		NR [11110260] (imputed)	N
1378	chr6	104022767	104022768	rs7765026	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	6q16.3		rs7765026-C	0.463	7E-6		1.223		NR [11110260] (imputed)	N
1378	chr6	104023030	104023031	rs6913858	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	6q16.3		rs6913858-T	0.463	7E-6		1.223		NR [11110260] (imputed)	N
1378	chr6	104023041	104023042	rs6571126	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	6q16.3		rs6571126-G	0.463	7E-6		1.223		NR [11110260] (imputed)	N
1378	chr6	104023336	104023337	rs6930729	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	6q16.3		rs6930729-C	0.4649	5E-6		1.226		NR [11110260] (imputed)	N
1378	chr6	104023409	104023410	rs6930891	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	6q16.3		rs6930891-C	0.463	7E-6		1.223		NR [11110260] (imputed)	N
1378	chr6	104023649	104023650	rs9391062	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	6q16.3		rs9391062-C	0.4633	8E-6		1.222		NR [11110260] (imputed)	N
1378	chr6	104024153	104024154	rs9377518	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	6q16.3		rs9377518-A	0.463	7E-6		1.223		NR [11110260] (imputed)	N
1378	chr6	104024155	104024156	rs9377519	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	6q16.3		rs9377519-G	0.463	7E-6		1.223		NR [11110260] (imputed)	N
1378	chr6	104025378	104025379	rs9377520	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	6q16.3		rs9377520-T	0.463	7E-6		1.224		NR [11110260] (imputed)	N
1378	chr6	104025971	104025972	rs6904099	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	6q16.3		rs6904099-G	0.463	7E-6		1.224		NR [11110260] (imputed)	N
1378	chr6	104026410	104026411	rs6928175	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	6q16.3		rs6928175-A	0.463	7E-6		1.224		NR [11110260] (imputed)	N
1378	chr6	104026909	104026909	rs10680948	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	6q16.3		rs10680948-T	0.4646	5E-6		1.228		NR [11110260] (imputed)	N
1378	chr6	104027201	104027202	rs9391064	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	6q16.3		rs9391064-G	0.4631	7E-6		1.223		NR [11110260] (imputed)	N
1378	chr6	104027361	104027362	rs6910768	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	6q16.3		rs6910768-G	0.463	7E-6		1.224		NR [11110260] (imputed)	N
1378	chr6	104027698	104027699	rs6939264	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	6q16.3		rs6939264-A	0.463	7E-6		1.224		NR [11110260] (imputed)	N
1378	chr6	104028793	104028794	rs9377523	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	6q16.3		rs9377523-G	0.4632	7E-6		1.222		NR [11110260] (imputed)	N
1378	chr6	104028963	104028964	rs9404428	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	6q16.3		rs9404428-C	0.463	7E-6		1.224		NR [11110260] (imputed)	N
1378	chr6	104029133	104029134	rs11156313	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	6q16.3		rs11156313-C	0.463	7E-6		1.224		NR [11110260] (imputed)	N
1378	chr6	104029500	104029501	rs140885697	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	6q16.3		rs140885697-TG	0.4634	7E-6		1.224		NR [11110260] (imputed)	N
1378	chr6	104029595	104029596	rs9391066	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	6q16.3		rs9391066-T	0.4635	7E-6		1.224		NR [11110260] (imputed)	N
1378	chr6	104029803	104029804	rs9391067	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	6q16.3		rs9391067-C	0.4631	7E-6		1.223		NR [11110260] (imputed)	N
1378	chr6	104029999	104030000	rs9399832	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	6q16.3		rs9399832-G	0.4636	6E-6		1.226		NR [11110260] (imputed)	N
1378	chr6	104030041	104030042	rs9386367	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	6q16.3		rs9386367-G	0.4637	6E-6		1.226		NR [11110260] (imputed)	N
1378	chr6	104030073	104030074	rs9386368	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	6q16.3		rs9386368-T	0.4637	6E-6		1.226		NR [11110260] (imputed)	N
1378	chr6	104030543	104030544	rs9386369	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	6q16.3		rs9386369-G	0.4637	5E-6		1.228		NR [11110260] (imputed)	N
1378	chr6	104030818	104030819	rs11156316	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	6q16.3		rs11156316-T	0.4637	5E-6		1.228		NR [11110260] (imputed)	N
1378	chr6	104031210	104031211	rs9377524	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	6q16.3		rs9377524-T	0.4637	5E-6		1.228		NR [11110260] (imputed)	N
1378	chr6	104047933	104047933	rs71547482	30868120	Berghuis B	2019-01-17	Epilepsia Open	A genome-wide association study of sodium levels and drug metabolism in an epilepsy cohort treated with carbamazepine and oxcarbazepine.	Carbamazepine metabolism (carbamazepine-10,11-diol to carbamazepine ratio) in epilepsy	468 European ancestry cases	NA	6q16.3	NR	rs71547482-?		7E-7		0.092	[NR] unit decrease	Illumina [NR]	N
1380	chr6	104213974	104213975	rs12192060	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Endometriosis	1,786 East Asian ancestry cases, 80,975 East Asian ancestry controls	NA	6q16.3		rs12192060-T	0.133569862	3E-8		0.30183768	[0.19-0.41] unit decrease	Illumina [13403071] (imputed)	N
1380	chr6	104265126	104265127	rs12661302	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		6q16.3	Intergenic	rs12661302-C	0.977	3E-6	(liability model)	0.25	[0.15-0.35] unit decrease	NR [19725427] (imputed)	N
1380	chr6	104286651	104286652	rs3936043	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6q16.3	LIN28B	rs3936043-?	NR	4E-6	(glycodeoxycholate)	0.82741356	[0.48-1.18] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1380	chr6	104313964	104313965	rs139116545	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	6q16.3	intergenic	rs139116545-G	0.0415914953257093	1E-6	(G_unclassified_F_Erysipelotrichaceae_HB)	0.708517	[0.43-0.99] unit increase	Illumina [7711310] (imputed)	N
1380	chr6	104328745	104328745	rs71673709	33602968	Skuladottir AT	2021-02-18	Sci Rep	A meta-analysis uncovers the first sequence variant conferring risk of Bell's palsy.	Bell's palsy	4,714 European ancestry cases, 1,011,520 European ancestry controls	NA	6q16.3	intergenic	rs71673709-TATA	0.0137	2E-6		2.33194	NR	Affymetrix, Illumina [30341632] (imputed)	N
1381	chr6	104392919	104392920	rs13212302	29626450	Bonfiglio F	2018-04-04	Gastroenterology	Female-specific Association Between Variants on Chromosome 9 and Self-reported Diagnosis of Irritable Bowel Syndrome.	Irritable bowel syndrome	7,130 British ancestry women cases, 2,446 British ancestry men cases, 178,076 British ancestry women controls, 158,423 British ancestry men controls	NA	6q16.3	Intergenic	rs13212302-T	0.59	2E-6		0.071	[0.042-0.1] unit decrease	Affymetrix [7287191] (imputed)	N
1381	chr6	104417720	104417721	rs72998574	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		6q16.3	Intergenic	rs72998574-T	0.022	2E-6	(liability model)	0.28	[0.16-0.4] unit increase	NR [19725427] (imputed)	N
1381	chr6	104422371	104422372	rs190738582	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	6q16.3	Intergenic	rs190738582-T	0.998	8E-8	(AA)	0.323	unit increase	Illumina [NR] (imputed)	N
1381	chr6	104427654	104427655	rs181238686	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	6q16.3	Intergenic	rs181238686-A	0.998	8E-8	(AA)	0.325	unit increase	Illumina [NR] (imputed)	N
1381	chr6	104432164	104432165	rs4520040	21348951	Parsa A	2011-02-01	Clin Transl Sci	Hypertrophy-associated polymorphisms ascertained in a founder cohort applied to heart failure risk and mortality.	Cardiac hypertrophy	851 Old Order Amish individuals	NA	6q16.3	GRIK2	rs4520040-?	NR	3E-6	(additive)			Affymetrix [361034]	N
1381	chr6	104445366	104445367	rs9499708	22889921	Stewart SE	2012-08-14	Mol Psychiatry	Genome-wide association study of obsessive-compulsive disorder.	Obsessive-compulsive disorder	1,279 European ancestry cases, 5,139 European ancestry controls, 299 European ancestry trios, 93 South African Afrikaner ancestry cases, 158  South African Afrikaner ancestry controls, 93 Ashkenazi Jewish cases, 260 Ashkenazi Jewish controls, 101 Hispanic and unknown ancestry trios	NA	6q16.3	GRIK2, HACE1	rs9499708-?	NR	3E-6		1.2	NR	Illumina [479067]	N
1382	chr6	104501197	104501198	rs859980	25158072	Yu D	2014-10-31	Am J Psychiatry	Cross-disorder genome-wide analyses suggest a complex genetic relationship between Tourette's syndrome and OCD.	Tourette's syndrome or obsessive-compulsive disorder	1,310 Ashkenazi Jewish, South African Afrikaner ancestry, and other European ancestry OCD cases, 834 Ashkenazi Jewish, French Canadian and other European ancestry Tourette's Syndrome cases, 579 Ashkenazi Jewish, South African Afrikaner ancestry, French Canadian and other European ancestry OCD and Tourette's syndrome cases, 4,975 European ancestry controls, 338 Ashkenazi Jewish controls, 196 French Canadian controls, 158 South African Afrikaner ancestry controls, 290 European ancestry OCD parent-child trios	NA	6q16.3	LOC100129694	rs859980-C	0.53	7E-6		1.15	[NR]	Illumina [7659573] (imputed)	N
1382	chr6	104521603	104521604	rs9499736	31219225	Young KA	2019-06-20	Obesity (Silver Spring)	Genome-Wide Association Study Identifies Loci for Liver Enzyme Concentrations in Mexican Americans: The GUARDIAN Consortium.	Gamma glutamyl transferase levels	1,577 Mexican American ancestry individuals	NA	6q16.3	intergenic	rs9499736-?	NR	2E-6				Illumina [655023]	N
1382	chr6	104562309	104562310	rs138768039	31049640	Chen J	2019-05-02	Diabetologia	Genome-wide association study of type 2 diabetes in Africa.	Type 2 diabetes	2,633 African ancestry cases, 1,714 African ancestry controls	NA	6q16.3	HACE1	rs138768039-T	0.986	4E-6		2.22	[1.59-3.10]	Affymetrix, Illumina [12148595] (imputed)	N
1382	chr6	104593866	104593867	rs9377619	20889312	Wang KS	2010-10-01	Schizophr Res	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	6q16.3	NR	rs9377619-?	NR	2E-6		1.3421	[NR]	Affymetrix [722112]	N
1383	chr6	104634390	104634391	rs138741939	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6q16.3	Intergenic	rs138741939-T	NR	5E-6	(women)	0.285329	[0.16-0.41] unit increase	Illumina [13520550] (imputed)	N
1383	chr6	104634544	104634544	rs149379135	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 16)	2,187 European ancestry individuals	NA	6q16.3	NR	rs149379135-AGGGGGGCACCCCCTTCACAAGTCCTGTAAAG	0.06305	4E-6		0.2924	[-0.41586--0.16894] unit decrease	Illumina [10677593] (imputed)	N
1383	chr6	104663777	104663778	rs2744203	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6q16.3	NR	rs2744203-C	0.0959963838018742	7E-6	(IGP39)	0.2327	[0.13-0.33] unit decrease	Illumina [~ 2500000] (imputed)	N
1383	chr6	104678831	104678832	rs71568191	26220383	Jang HW	2015-06-02	Epilepsy Res	GWAS identifies two susceptibility loci for lamotrigine-induced skin rash in patients with epilepsy.	Epilepsy and lamotrigine-induced maculopapular eruptions	34 Korean ancestry cases, 1,080 Korean ancestry healthy controls	NA	6q16.3	HACE1	rs71568191-A	0.01	3E-9		8.9	[NR]	Affymetrix [4893794] (imputed)	N
1383	chr6	104693306	104693307	rs765885335	30298529	Stanaway IB	2018-10-08	Genet Epidemiol	The eMERGE genotype set of 83,717 subjects imputed to ~40 million variants genome wide and association with the herpes zoster medical record phenotype.	Shingles	3,201 European ancestry cases, 34,960 European ancestry controls, 398 African American cases, 5,922 African American controls, 756 Asian ancestry individuals	NA	6q16.3	intergenic	rs765885335-G	0.0003	3E-8		10.15	NR	Affymetrix, Illumina [39127678] (imputed)	N
1383	chr6	104721992	104721993	rs78762426	32131869	Arbeeva L	2020-03-04	J Foot Ankle Res	Genome-wide meta-analysis identified novel variant associated with hallux valgus in Caucasians.	Hallux valgus	609 European ancestry male cases, 1,666 European ancestry male controls	NA	6q16.3	RP3-359N14.1	rs78762426-A	0.08	3E-6		1.89	[1.45-2.46]	Affymetrix, Illumina [up to 7729175] (imputed)	N
1384	chr6	104776653	104776654	rs274437	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	6q16.3	Intergenic	rs274437-?	NR	5E-6		1.4566643	[NR]	Affymetrix [492217] (imputed)	N
1384	chr6	104789791	104789792	rs705638	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	6q16.3		rs705638-A	NR	4E-11		0.0193	[0.014-0.025] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1384	chr6	104790531	104790532	rs270689	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6q16.3	NR	rs270689-?	NR	3E-14				Affymetrix [~ 8270000] (imputed)	N
1384	chr6	104793193	104793194	rs270694	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	6q16.3		rs270694-?	NR	4E-14				NR [~ 8900000] (imputed)	N
1384	chr6	104810082	104810083	rs156126	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		6q16.3	HACE1	rs156126-T	0.196434	3E-9		0.010277	[0.0069-0.0137] unit decrease	Affymetrix [12370749]	N
1384	chr6	104812438	104812439	rs156121	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6q16.3	LIN28B	rs156121-?	NR	7E-6	(aminoadipic acid)	0.1726992	[0.097-0.248] unit increase	Affymetrix [at least 2500000] (imputed)	N
1384	chr6	104816943	104816944	rs1417665	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	6q16.3	NA	rs1417665-T	0.8026	5E-18		0.0186	[0.014-0.023] unit increase	NR [~ 27400000] (imputed)	N
1384	chr6	104816943	104816944	rs1417665	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	6q16.3	NA	rs1417665-T	0.8026	5E-18		0.0186	[0.014-0.023] unit increase	NR [~ 27400000] (imputed)	N
1384	chr6	104817774	104817775	rs17459015	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	6q16.3	NA	rs17459015-T	0.8026	6E-18		0.0186	[0.014-0.023] unit increase	NR [~ 27400000] (imputed)	N
1384	chr6	104825390	104825391	rs180949905	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-13 levels	3,557 Finnish ancestry individuals	NA	6q16.3	NR	rs180949905-G		6E-6		0.1406	[0.08-0.201] SD units decrease	NR [10700000] (imputed)	N
1385	chr6	104935971	104935972	rs9373768	31545351	Irvin MR	2019-09-23	Am J Hypertens	Genome wide association study of apparent treatment resistant hypertension in the CHARGE consortium: The CHARGE Pharmacogenetics Working Group.	Resistant hypertension	931 European ancestry cases, 228 African American ancestry cases, 14,210 European ancestry controls, 2,480 African American ancestry controls	NA	6q16.3	HACE1, NONE	rs9373768-?	NR	1E-7		1.48	[1.29-1.70]	Affymetrix, Illumina [NR] (imputed)	N
1386	chr6	105022234	105022235	rs13198979	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6q16.3	RP11-427E4.1	rs13198979-C	NR	3E-8		0.0222669	[0.014-0.03] unit decrease	Affymetrix [323123] (imputed)	N
1386	chr6	105026962	105026962	rs11458328	29698431	Roosenboom J	2018-04-26	PLoS One	Mapping genetic variants for cranial vault shape in humans.	Cephalic index	4,419 European ancestry individuals	NA	6q16.3	NR	rs11458328-TA	0.1942	4E-6		0.4637	[0.22-0.71] unit increase	Illumina [at least 567677] (imputed)	N
1386	chr6	105071379	105071380	rs7746459	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	6q16.3		rs7746459-?	NR	5E-10				NR [~ 8900000] (imputed)	N
1386	chr6	105079723	105079724	rs4945704	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	6q16.3	NR	rs4945704-A	0.414	4E-8		0.00740538	[0.0048-0.01] unit decrease	NR [~ 9732723] (imputed)	N
1386	chr6	105118743	105118744	rs145812241	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	6q16.3		rs145812241-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1387	chr6	105141135	105141136	rs34103875	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	6q16.3	RP11-427E4.1	rs34103875-G	NR	5E-9		0.025842	[0.017-0.034] unit increase	Affymetrix [323858] (imputed)	N
1387	chr6	105147783	105147784	rs72990858	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	6q16.3	HACE1	rs72990858-G	0.903818	9E-10		0.0214949	[0.015-0.028] unit decrease	NR [16516521] (imputed)	N
1387	chr6	105147783	105147784	rs72990858	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	6q16.3	NR	rs72990858-A	0.0972	2E-10		0.0120571	[0.0084-0.0158] unit decrease	NR [9732723] (imputed)	N
1387	chr6	105147783	105147784	rs72990858	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6q16.3	Intergenic	rs72990858-A	0.0972	4E-9	(MTAG)	0.0131	[0.0088-0.0174] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1387	chr6	105147783	105147784	rs72990858	28545128	McDaniel LD	2017-05-18	PLoS Genet	Common variants upstream of MLF1 at 3q25 and within CPZ at 4p16 associated with neuroblastoma.	Sporadic neuroblastoma	2,101 European ancestry child cases, 4,202 European ancestry controls	365 African American child cases, 2,491 African American controls, 427 European ancestry cases, 783 European ancestry controls, 371 cases, 1,122 controls	6q16.3	HACE1	rs72990858-G	0.908	1E-13	(European American)	1.6949153	[1.45-1.96]	Illumina [7968453] (imputed)	N
1387	chr6	105149389	105149390	rs11962123	35131881	Testori A	2022-02-07	Cancer Epidemiol Biomarkers Prev	Genetic analysis in African American children supports ancestry specific neuroblastoma susceptibility.	Neuroblastoma	629 African American cases, 2,990 African American controls	NA	6q16.3		rs11962123-C	NR	5E-6		0.3281	unit increase	Illumina [8524982] (imputed)	N
1387	chr6	105149712	105149713	rs10782363	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	6q16.3		rs10782363-C	0.531	7E-10		0.007	[0.005-0.009] unit increase	NR [NR] (imputed)	N
1387	chr6	105161746	105161747	rs111685928	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6q16.3		rs111685928-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1387	chr6	105179778	105179779	rs182123322	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6q16.3	NR	rs182123322-T	0.0122	7E-9	(HPD)	1.974	NR unit increase	Illumina [1671387] (imputed)	N
1387	chr6	105180784	105180785	rs4336470	22941191	Diskin SJ	2012-09-02	Nat Genet	Common variation at 6q16 within HACE1 and LIN28B influences susceptibility to neuroblastoma.	Neuroblastoma	2,101 European ancestry cases, 4,202 European ancestry controls	351 European ancestry cases, 780 European ancestry controls, 365 African American cases, 2,491 African American controls	6q16.3	HACE1	rs4336470-C	0.65	3E-11		1.26	[1.18-1.35]	Illumina [426697]	N
1387	chr6	105189654	105189655	rs62419342	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	6q16.3		rs62419342-C	0.237161	3E-8		0.0175642	[0.011-0.024] unit increase	Illumina [13479924] (imputed)	N
1387	chr6	105221898	105221899	rs117086465	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6q16.3	HACE1	rs117086465-G	NR	2E-10		0.0410726	[0.028-0.054] unit increase	Affymetrix [323123] (imputed)	N
1387	chr6	105223863	105223864	rs733724	23412934	Gourraud PA	2013-02-13	Brain	A genome-wide association study of brain lesion distribution in multiple sclerosis.	Multiple sclerosis	284 European ancestry individuals		6q16.3	HACE1	rs733724-?		3E-7	(Cluxel size)			Illumina [208975]	N
1387	chr6	105232232	105232233	rs9322817	17903292	Hwang SJ	2007-09-19	BMC Med Genet	A genome-wide association for kidney function and endocrine-related traits in the NHLBI's Framingham Heart Study.	Thyroid stimulating hormone levels	883 individuals	NA	6q16.3	HACE1	rs9322817-?	NR	7E-6				Affymetrix [70897]	N
1388	chr6	105346216	105346217	rs12526038	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	6q16.3		rs12526038-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1388	chr6	105348543	105348544	rs2153127	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	6q16.3	LIN28B	rs2153127-T	0.52	6E-59		0.08	[0.07-0.09] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
1388	chr6	105352034	105352035	rs4945713	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	6q16.3		rs4945713-A	0.4	2E-11		6.7	z score increase	Affymetrix [9061022] (imputed)	N
1388	chr6	105353474	105353475	rs1933805	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6q16.3	LINC00577	rs1933805-A	NR	7E-9		0.0165592	[0.011-0.022] unit decrease	Affymetrix [321114] (imputed)	N
1388	chr6	105353474	105353475	rs1933805	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6q16.3	LINC00577	rs1933805-A	NR	1E-14		0.0237461	[0.018-0.03] unit decrease	Affymetrix [323123] (imputed)	N
1388	chr6	105358163	105358164	rs11758569	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	6q16.3	NR	rs11758569-A	0.156	6E-7		0.00748469	[0.0046-0.0104] unit decrease	NR [9732723] (imputed)	N
1388	chr6	105358191	105358192	rs6902789	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	6q16.3		rs6902789-A	NR	6E-12		0.0122	[0.0087-0.0157] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1388	chr6	105364420	105364421	rs11156429	34337532	Fantus RJ	2021-05-25	Eur Urol Open Sci	Genetic Susceptibility for Low Testosterone in Men and Its Implications in Biology and Screening: Data from the UK Biobank.	Low testosterone levels	13,409 European ancestry male cases, 98,267 European ancestry male controls	4,426 European ancestry male cases, 32,800 European ancestry male controls	6q16.3	NR	rs11156429-T	0.45	1E-11		1.08	NR	NR [8853336] (imputed)	N
1388	chr6	105364420	105364421	rs11156429	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (late vs. average onset voice breaking)	11,334 European ancestry late onset individuals, 172,138 European ancestry average onset individuals	NA	6q16.3		rs11156429-T	NR	3E-16		0.00646028	[0.0049-0.008] years increase	NR [7400000] (imputed)	N
1388	chr6	105364420	105364421	rs11156429	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (late vs. average onset facial hair)	26,066 European ancestry late onset individuals, 161,175 European ancestry average onset individuals	NA	6q16.3		rs11156429-T	NR	1E-20		0.0102481	[0.0081-0.0124] years increase	NR [7400000] (imputed)	N
1388	chr6	105364420	105364421	rs11156429	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (early vs. average onset voice breaking)	8,245 European ancestry early onset individuals, 172,138 European ancestry average onset individuals	NA	6q16.3		rs11156429-T	NR	7E-13		0.004984	[0.0036-0.0064] years decrease	NR [7400000] (imputed)	N
1388	chr6	105364420	105364421	rs11156429	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (early vs. average onset facial hair)	13,226 European ancestry early onset individuals, 161,175 European ancestry average onset individuals	NA	6q16.3		rs11156429-T	NR	1E-15		0.00712223	[0.0054-0.0089] years decrease	NR [7400000] (imputed)	N
1388	chr6	105364420	105364421	rs11156429	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (age at voice breaking MTAG)	205,354 European ancestry individuals	NA	6q16.3		rs11156429-T	NR	3E-52		0.049468596	[0.043-0.056] years increase	NR [7400000] (imputed)	N
1388	chr6	105364420	105364421	rs11156429	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6q16.3	HACE1	rs11156429-T	0.4566	2E-6	(EA, women)	0.0232	[0.014-0.033] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1388	chr6	105364420	105364421	rs11156429	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6q16.3	HACE1	rs11156429-T	0.4566	2E-15	(EA)	0.0297	[0.022-0.037] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1388	chr6	105364420	105364421	rs11156429	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in inactive individuals	561 African American women, 352 Filipino ancestry women, 725 Indian ancestry women, 19,288 European ancestry women, 251 African American men, 4,654 Indian ancestry men, 11,681 European ancestry men, 959 European ancestry individuals	1,437 African American women, 5,184 European ancestry women, 64 African American men, 5,416 European ancestry men	6q16.3	HACE1	rs11156429-T	0.4571	4E-7	(EA)	0.0387	[0.024-0.054] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1388	chr6	105364420	105364421	rs11156429	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6q16.3	HACE1	rs11156429-T	0.4566	1E-10	(EA)	0.0275	[0.019-0.036] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1388	chr6	105364420	105364421	rs11156429	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6q16.3	HACE1	rs11156429-?	0.4566	9E-7	(EA, women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1388	chr6	105364420	105364421	rs11156429	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6q16.3	HACE1	rs11156429-?	0.4566	3E-15	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1388	chr6	105364420	105364421	rs11156429	23449627	Cousminer DL	2013-02-27	Hum Mol Genet	Genome-wide association and longitudinal analyses reveal genetic loci linking pubertal height growth, pubertal timing and childhood adiposity.	Pubertal anthropometrics	up to 5,043 European ancestry males, up to 5,756 European ancestry females	NA	6q16.3	LIN28B	rs11156429-G	0.55	2E-7	(Late pubertal growth, females)	0.11	[0.071-0.149] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1388	chr6	105365724	105365725	rs1933801	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	6q16.3		rs1933801-T	NR	9E-121		0.0324	[0.03-0.035] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1388	chr6	105365724	105365725	rs1933801	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6q16.3	LINC00577	rs1933801-C	NR	2E-17		0.0281027	[0.022-0.035] unit increase	Affymetrix [321114] (imputed)	N
1388	chr6	105365724	105365725	rs1933801	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	6q16.3	NR	rs1933801-T	0.678113	8E-33		0.0375388	[0.031-0.044] unit increase	Affymetrix [16577313] (imputed)	N
1388	chr6	105365724	105365725	rs1933801	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6q16.3	NR	rs1933801-?	NR	5E-35				Affymetrix [~ 8270000] (imputed)	N
1388	chr6	105365724	105365725	rs1933801	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	6q16.3		rs1933801-?	NR	1E-202				NR [~ 8900000] (imputed)	N
1388	chr6	105365724	105365725	rs1933801	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	6q16.3		rs1933801-?	NR	2E-14				NR [~ 8900000] (imputed)	N
1388	chr6	105365890	105365891	rs1933802	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	6q16.3		rs1933802-?	NR	2E-12		0.0206	unit decrease	NR [NR]	N
1388	chr6	105365890	105365891	rs1933802	31926635	Coleman JRI	2019-11-01	Biol Psychiatry	The Genetics of the Mood Disorder Spectrum: Genome-wide Association Analyses of More Than 185,000 Cases and 439,000 Controls.	Bipolar disorder or major depressive disorder	164,933 European ancestry major depressive disorder cases, 20,352 European ancestry bipolar disorder cases, 439,741 European ancestry controls	NA	6q16.3	NR	rs1933802-G	NR	1E-8		1.0204082		NR [NR] (imputed)	N
1388	chr6	105365890	105365891	rs1933802	30718901	Howard DM	2019-02-04	Nat Neurosci	Genome-wide meta-analysis of depression identifies 102 independent variants and highlights the importance of the prefrontal brain regions.	Depression	118,811 European ancestry cases, 327,427 European ancestry controls, 127,552 cases, 233,763 controls	414,055 European ancestry cases, 892,299 European ancestry controls	6q16.3	NR	rs1933802-G	0.5464	1E-19		1.0204082	[1.02-1.02]	NR [8098588] (imputed)	N
1388	chr6	105367615	105367616	rs9391253	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	6q16.3	NR	rs9391253-?	NR	4E-8		0.03476676	[0.022-0.047] unit increase	Illumina [34656550] (imputed)	N
1388	chr6	105367615	105367616	rs9391253	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Age at voice drop	55,871 European ancestry individuals	NA	6q16.3	HACE1, LIN28B	rs9391253-?	NR	1E-23		0.058	[0.046-0.069] unit increase	Illumina [12039491]	N
1388	chr6	105367615	105367616	rs9391253	24770850	Cousminer DL	2014-04-25	Hum Mol Genet	Genome-wide association study of sexual maturation in males and females highlights a role for body mass and menarche loci in male puberty.	Puberty onset (breast development)	6,147 European ancestry girls	NA	6q16.3	LIN28B	rs9391253-T	0.33	3E-7		0.088	[0.055-0.121] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1388	chr6	105367615	105367616	rs9391253	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	6q16.3	LIN28B	rs9391253-T	0.32	5E-12		1.16	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
1388	chr6	105369509	105369510	rs4946651	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6q16.3	LINC00577	rs4946651-A	NR	3E-11		0.0188905	[0.013-0.024] unit increase	Affymetrix [321114] (imputed)	N
1388	chr6	105369597	105369598	rs9322822	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	6q16.3	NR	rs9322822-C	0.678953	9E-27		0.023054	[0.019-0.027] unit increase	Affymetrix [16583148] (imputed)	N
1388	chr6	105369597	105369598	rs9322822	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	6q16.3	NR	rs9322822-C	0.6785	2E-52		0.0487092	[0.042-0.055] unit increase	Affymetrix [16577424] (imputed)	N
1388	chr6	105372684	105372685	rs13197753	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	6q16.3	NA	rs13197753-C	0.5468	4E-10	(Male)	1.063	[1.04-1.08]	Affymetrix, Illumina [NR] (imputed)	N
1388	chr6	105378953	105378954	rs7759938	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	6q16.3	LIN28B	rs7759938-C	0.321912	3E-11		0.00997693	[0.007-0.0129] unit decrease	Affymetrix [12370749]	N
1388	chr6	105378953	105378954	rs7759938	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	6q16.3	NR	rs7759938-T	0.677632	2E-13		0.00999899	[0.0073-0.0127] unit increase	Affymetrix [16578495] (imputed)	N
1388	chr6	105378953	105378954	rs7759938	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	6q16.3	NR	rs7759938-?	NR	6E-8		0.03224117	[0.021-0.044] unit decrease	Illumina [34656550] (imputed)	N
1388	chr6	105378953	105378954	rs7759938	30044860	Fernandez-Rhodes L	2018-07-25	PLoS One	The genetic underpinnings of variation in ages at menarche and natural menopause among women from the multi-ethnic Population Architecture using Genomics and Epidemiology (PAGE) Study: A trans-ethnic meta-analysis.	Age at menarche	20,209 African American, 15,347 Hispanic, 8,273 Asian American, 538 Native American ancestry women	NA	6q16.3	LIN28B	rs7759938-T	0.601	5E-18		0.106	[0.086-0.126] years decrease	Illumina [196483]	N
1388	chr6	105378953	105378954	rs7759938	29773799	Horikoshi M	2018-05-17	Nat Commun	Elucidating the genetic architecture of reproductive ageing in the Japanese population.	Menarche (age at onset)	67,029 Japanese ancestry women	73,397 European ancestry women	6q16.3	NR	rs7759938-C	0.28	4E-16	(Japanese)	0.079	[0.059-0.099] year increase	Illumina [at least 532488] (imputed)	N
1388	chr6	105378953	105378954	rs7759938	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	6q16.3	HACE1, LIN28B-AS1	rs7759938-C	0.3244	5E-9		0.0828	[0.053-0.112] unit increase	Affymetrix [~ 11900000] (imputed)	N
1388	chr6	105378953	105378954	rs7759938	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6q16.3	LIN28B	rs7759938-C	0.33030000000000004	6E-15	(women)	0.043	[0.032-0.054] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1388	chr6	105378953	105378954	rs7759938	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6q16.3	LIN28B	rs7759938-C	0.33030000000000004	3E-15		0.0302	[0.023-0.038] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1388	chr6	105378953	105378954	rs7759938	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6q16.3	LIN28B	rs7759938-C	0.33030000000000004	3E-13	(men)	0.0416	[0.03-0.053] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1388	chr6	105378953	105378954	rs7759938	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6q16.3	LIN28B	rs7759938-C	0.32089999999999996	2E-13	(EA, men)	0.0436	[0.032-0.055] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1388	chr6	105378953	105378954	rs7759938	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in inactive individuals	561 African American women, 352 Filipino ancestry women, 725 Indian ancestry women, 19,288 European ancestry women, 251 African American men, 4,654 Indian ancestry men, 11,681 European ancestry men, 959 European ancestry individuals	1,437 African American women, 5,184 European ancestry women, 64 African American men, 5,416 European ancestry men	6q16.3	LIN28B	rs7759938-C	0.3294	7E-7		0.0372	[0.023-0.052] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1388	chr6	105378953	105378954	rs7759938	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6q16.3	LIN28B	rs7759938-C	0.34140000000000004	5E-12	(women)	0.0435	[0.031-0.056] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1388	chr6	105378953	105378954	rs7759938	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6q16.3	LIN28B	rs7759938-C	0.33030000000000004	4E-11		0.0286	[0.02-0.037] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1388	chr6	105378953	105378954	rs7759938	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6q16.3	LIN28B	rs7759938-C	0.32189999999999996	4E-11	(men)	0.0431	[0.03-0.056] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1388	chr6	105378953	105378954	rs7759938	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6q16.3	LIN28B	rs7759938-?	0.33030000000000004	6E-15	(women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1388	chr6	105378953	105378954	rs7759938	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6q16.3	LIN28B	rs7759938-?	0.33030000000000004	3E-13	(men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1388	chr6	105378953	105378954	rs7759938	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6q16.3	LIN28B	rs7759938-?	0.33030000000000004	1E-15				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1388	chr6	105378953	105378954	rs7759938	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6q16.3	LIN28B	rs7759938-?	0.32089999999999996	1E-13	(EA, men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1388	chr6	105378953	105378954	rs7759938	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6q16.3	LIN28B	rs7759938-T	0.6803	2E-6	(EA, women)	0.0231	[0.013-0.033] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1388	chr6	105378953	105378954	rs7759938	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6q16.3	LIN28B	rs7759938-T	0.6803	2E-13	(EA)	0.0279	[0.02-0.035] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1388	chr6	105378953	105378954	rs7759938	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6q16.3	LIN28B	rs7759938-T	0.6803	1E-9	(EA,men)	0.0331	[0.023-0.044] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1388	chr6	105378953	105378954	rs7759938	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	6q16.3	LIN28B	rs7759938-T	0.56	5E-8		0.031	[0.017-0.045] unit decrease	Affymetrix, Illumina [2704730] (imputed)	N
1388	chr6	105378953	105378954	rs7759938	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	6q16.3	LIN28B	rs7759938-C	0.32	8E-110		0.12	[0.11-0.13] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
1388	chr6	105378953	105378954	rs7759938	23449627	Cousminer DL	2013-02-27	Hum Mol Genet	Genome-wide association and longitudinal analyses reveal genetic loci linking pubertal height growth, pubertal timing and childhood adiposity.	Pubertal anthropometrics	up to 5,043 European ancestry males, up to 5,756 European ancestry females	NA	6q16.3	LIN28B	rs7759938-C	0.32	4E-9	(Late pubertal growth)	0.11	[0.079-0.141] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1388	chr6	105378953	105378954	rs7759938	21102462	Elks CE	2010-11-21	Nat Genet	Thirty new loci for age at menarche identified by a meta-analysis of genome-wide association studies.	Menarche (age at onset)	86,142 European ancestry female individuals, 557 Old Order Amish (founder/genetic isolate) female individuals, 1,103 Erasmus Rucphen (founder/genetic isolate) female individuals	Up to 12,813 European ancestry female individuals, 910 Val Borbera (founder/genetic isolate) female individuals, 348 Orcadian (founder/genetic isolate) female individuals, 338 Friuli Venezia Giulia (founder/genetic isolate) female individuals, 322 Carlantino (founder/genetic/isolate) female individuals	6q16.3	LIN28B	rs7759938-C	0.32	5E-60		6.4	[5.62-7.18] week increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1388	chr6	105378953	105378954	rs7759938	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	6q16.3	LIN28B	rs7759938-T	0.68	8E-31		0.045	[NR] unit decrease	Affymetrix, Illumina [2834208] (imputed)	N
1388	chr6	105378953	105378954	rs7759938	19448620	Perry JR	2009-05-17	Nat Genet	Meta-analysis of genome-wide association data identifies two loci influencing age at menarche.	Menarche (age at onset)	17,510 European ancestry female individuals	NA	6q16.3	LIN28B	rs7759938-C	0.33	7E-9		0.09	[0.05-0.13] years increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1388	chr6	105379675	105379676	rs111307712	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Intraocular pressure	133,492 European ancestry individuals	NA	6q16.3	LIN28B	rs111307712-?	NR	4E-9		0.1168	[0.078-0.156] unit decrease	Affymetrix, Illumina [up to 40000000] (imputed)	N
1389	chr6	105383977	105383978	rs2095812	34021356	Sarnowski C	2021-05-22	Hum Reprod	Large trans-ethnic meta-analysis identifies AKR1C4 as a novel gene associated with age at menarche.	Menarche (age at onset)	19,028 African ancestry individuals, 3,205 South Asian ancestry individuals, 2,095 East Asian ancestry individuals, 10,661 Hispanic/Latina individuals, 3,557 individuals	NA	6q16.3	NR	rs2095812-C	0.71	9E-11		0.09	[0.07-0.11] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1389	chr6	105385611	105385612	rs12207399	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	6q16.3		rs12207399-A	0.715979	6E-27		0.0238278	[0.019-0.028] unit decrease	Illumina [13479295] (imputed)	N
1389	chr6	105385611	105385612	rs12207399	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	6q16.3	LINC00577	rs12207399-?	NR	1E-33		0.037892476	[0.032-0.044] unit decrease	Illumina [27896057] (imputed)	N
1389	chr6	105388404	105388405	rs7766336	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	6q16.3	NR	rs7766336-G	0.67998	1E-10		0.0477899	[0.033-0.062] unit increase	Affymetrix [17914406] (imputed)	N
1389	chr6	105388404	105388405	rs7766336	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Menarche (age at onset)	76,831 European ancestry individuals	NA	6q16.3	HACE1, LIN28B	rs7766336-?	NR	4E-57		0.074	[0.065-0.083] unit increase	Illumina [12039492]	N
1389	chr6	105389103	105389104	rs12528131	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling guilty	373,380 European ancestry individuals	NA	6q16.3	HACE1	rs12528131-A	0.4826	1E-10		6.42	z score decrease	NR [10847151] (imputed)	N
1389	chr6	105389952	105389953	rs1475120	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	6q16.3	LIN28B-AS1	rs1475120-G	0.452766	3E-13		0.0133593	[0.0098-0.017] unit decrease	NR [13737936] (imputed)	N
1389	chr6	105389952	105389953	rs1475120	27479909	Hyde CL	2016-08-01	Nat Genet	Identification of 15 genetic loci associated with risk of major depression in individuals of European descent.	Major depressive disorder	84,847 European ancestry cases, 241,266 European ancestry controls	45,773 European ancestry cases, 106,354 European ancestry controls	6q16.3	HACE1, LIN28B	rs1475120-G	0.452458	4E-9		0.0292	[0.017-0.041] unit decrease	Illumina [1220000] (imputed)	N
1389	chr6	105392004	105392005	rs11285463	29773799	Horikoshi M	2018-05-17	Nat Commun	Elucidating the genetic architecture of reproductive ageing in the Japanese population.	Menarche (age at onset)	67,029 Japanese ancestry women	73,397 European ancestry women	6q16.3	LIN28B	rs11285463-AT	0.29	3E-16	(japanese)	0.08	[0.06-0.1] year increase	Illumina [at least 532488] (imputed)	N
1389	chr6	105392744	105392745	rs314263	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	6q16.3	NR	rs314263-?	NR	6E-10		0.03827385	[0.026-0.05] unit decrease	Illumina [34656550] (imputed)	N
1389	chr6	105392744	105392745	rs314263	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	6q16.3	LIN28B	rs314263-C	0.318936	8E-44		0.03644	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1389	chr6	105392744	105392745	rs314263	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	6q16.3	LIN28B	rs314263-C	0.318936	3E-29	(females)	0.03898	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1389	chr6	105392744	105392745	rs314263	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	6q16.3	LIN28B	rs314263-C	0.318936	1E-16	(males)	0.03328	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1389	chr6	105392744	105392745	rs314263	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	6q16.3	LIN28B	rs314263-C	0.318936	2E-35		0.03303	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1389	chr6	105392744	105392745	rs314263	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	6q16.3	LIN28B	rs314263-C	0.318936	1E-22	(females)	0.03499	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1389	chr6	105392744	105392745	rs314263	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	6q16.3	LIN28B	rs314263-C	0.318936	1E-14	(males)	0.03054	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1389	chr6	105392744	105392745	rs314263	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	6q16.3	LIN28B	rs314263-C	0.318936	3E-7		0.01352	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1389	chr6	105392744	105392745	rs314263	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	6q16.3	LIN28B	rs314263-C	0.318936	3E-6	(females)	0.01491	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1389	chr6	105392744	105392745	rs314263	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	6q16.3	LIN28B-AS1, LIN28B	rs314263-C	0.3224	8E-9		0.081	[0.052-0.11] unit increase	Affymetrix [~ 11900000] (imputed)	N
1389	chr6	105392744	105392745	rs314263	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	6q16.3	LIN28B	rs314263-T	0.676	1E-42		0.043	[0.037-0.049] unit decrease	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
1389	chr6	105394620	105394621	rs314262	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	6q16.3	NR	rs314262-A	0.540533529542356	4E-8		0.005054806	[0.0032-0.0069] unit increase	NR [NR]	N
1389	chr6	105394620	105394621	rs314262	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	6q16.3	NR	rs314262-A	0.540533529542356	4E-8		0.008068154	[0.0052-0.011] unit increase	NR [NR]	N
1389	chr6	105394620	105394621	rs314262	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	6q16.3	NR	rs314262-A	0.540533529542356	4E-8		0.0051637557	[0.0033-0.007] unit increase	NR [NR]	N
1389	chr6	105397417	105397418	rs395962	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6q16.3		rs395962-?	NR	1E-175				NR [~ 8900000] (imputed)	N
1389	chr6	105397417	105397418	rs395962	29773799	Horikoshi M	2018-05-17	Nat Commun	Elucidating the genetic architecture of reproductive ageing in the Japanese population.	Menopause (age at onset)	43,861 Japanese ancestry women	32,545 European ancestry women	6q16.3	NR	rs395962-T	0.2826	5E-16	(Japanese)	0.079	[0.059-0.099] year increase	Illumina [at least 532488] (imputed)	N
1389	chr6	105397417	105397418	rs395962	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6q16.3	LIN28B	rs395962-T	0.3246	2E-11	(EA, men)	0.0438	[0.031-0.057] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1389	chr6	105397417	105397418	rs395962	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in smokers	19,276 European ancestry women, 16,408 European ancestry men, 973 European ancestry individuals, 1,701 African American/Afro-Caribbean ancestry women, 903 African American/Afro-Caribbean ancestry men, 10 Indian Asian ancestry women, 957 Indian Asian ancestry men, 267 Filipino ancestry women, 475 Hispanic/Latino ancestry women, 446 Hispanic/Latino ancestry men	5,485 European ancestry women, 6,471 European ancestry men, 13,416 European ancestry individuals, 253 African American/Afro-Caribbean ancestry women, 208 African American/Afro-Caribbean ancestry men	6q16.3	LIN28B	rs395962-T	0.3169	8E-7	(men)	0.0548	[0.033-0.077] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1389	chr6	105397417	105397418	rs395962	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in smokers	19,276 European ancestry women, 16,408 European ancestry men, 973 European ancestry individuals, 1,701 African American/Afro-Caribbean ancestry women, 903 African American/Afro-Caribbean ancestry men, 10 Indian Asian ancestry women, 957 Indian Asian ancestry men, 267 Filipino ancestry women, 475 Hispanic/Latino ancestry women, 446 Hispanic/Latino ancestry men	5,485 European ancestry women, 6,471 European ancestry men, 13,416 European ancestry individuals, 253 African American/Afro-Caribbean ancestry women, 208 African American/Afro-Caribbean ancestry men	6q16.3	LIN28B	rs395962-T	0.3169	3E-6		0.0367	[0.021-0.052] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1389	chr6	105397417	105397418	rs395962	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in non-smokers	77,113 European ancestry women, 47,319 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	6q16.3	LIN28B	rs395962-T	0.3169	3E-8	(men)	0.0344	[0.022-0.047] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1389	chr6	105397417	105397418	rs395962	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in non-smokers	77,113 European ancestry women, 47,319 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	6q16.3	LIN28B	rs395962-T	0.3169	2E-10		0.0257	[0.018-0.034] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1389	chr6	105397417	105397418	rs395962	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	6q16.3	LIN28B	rs395962-T	0.3169	5E-14				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1389	chr6	105397417	105397418	rs395962	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	6q16.3	LIN28B	rs395962-T	0.3169	1E-12	(men)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1389	chr6	105397417	105397418	rs395962	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	6q16.3	LIN28B	rs395962-T	0.3169	6E-14	(men)	0.0398	[0.029-0.05] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1389	chr6	105397417	105397418	rs395962	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	6q16.3	LIN28B	rs395962-T	0.3169	3E-14		0.0281	[0.021-0.035] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1389	chr6	105397417	105397418	rs395962	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6q16.3	LIN28B	rs395962-T	0.3235	2E-6	(EA,women)	0.0223	[0.013-0.032] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1389	chr6	105397417	105397418	rs395962	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6q16.3	LIN28B	rs395962-T	0.3235	2E-12	(EA, men)	0.0358	[0.026-0.046] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1389	chr6	105397417	105397418	rs395962	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6q16.3	LIN28B	rs395962-T	0.3235	1E-15	(EA)	0.0288	[0.022-0.036] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1389	chr6	105397590	105397591	rs9386433	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6q16.3	LIN28B	rs9386433-A	NR	3E-10		0.0234169	[0.016-0.031] unit increase	Affymetrix [321114] (imputed)	N
1389	chr6	105398085	105398086	rs370771	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6q16.3	LIN28B	rs370771-G	NR	3E-24		0.0312619	[0.025-0.037] unit increase	Affymetrix [323123] (imputed)	N
1389	chr6	105398085	105398086	rs370771	32332799	Song W	2020-04-24	Sci Rep	Genome-wide association analysis of insomnia using data from Partners Biobank.	Insomnia	404,588 European ancestry individuals, 17,651 European, Hispanic and African ancestry individuals	NA	6q16.3	LIN28B	rs370771-T	0.4692	1E-11				Illumina [5508534] (imputed)	N
1389	chr6	105398085	105398086	rs370771	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	6q16.3		rs370771-?	NR	3E-17				NR [~ 8900000] (imputed)	N
1389	chr6	105400604	105400605	rs314281	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	6q16.3	NR	rs314281-C	0.5469	6E-13		1.0438414	[1.03-1.06]	Affymetrix, Illumina [NR] (imputed)	N
1389	chr6	105400836	105400837	rs314280	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure	35,269 European ancestry cases, 63,451 European ancestry controls	NA	6q16.3	NR	rs314280-G	0.545072	5E-6		1.066	[1.04-1.09]	Affymetrix [7791636] (imputed)	N
1389	chr6	105400836	105400837	rs314280	30804566	Lane JM	2019-02-25	Nat Genet	Biological and clinical insights from genetics of insomnia symptoms.	Insomnia symptoms (never/rarely vs. usually)	129,270 European ancestry cases, 108,357 European ancestry controls	17,140 European ancestry cases, 61,850 European ancestry controls	6q16.3	RP3-439I14.1	rs314280-G	0.5482400000000001	1E-9		1.01	[1.00-1.03]	Affymetrix [14661600] (imputed)	N
1389	chr6	105400836	105400837	rs314280	19448622	Sulem P	2009-05-15	Nat Genet	Genome-wide association study identifies sequence variants on 6q21 associated with age at menarche.	Menarche (age at onset)	15,297 European ancestry female individuals	10,040 European ancestry female individuals	6q16.3	BVES, LIN28B, POPDC3, HACE1, E3 ubiquitin protein ligase 1	rs314280-T	0.48	2E-14		1.2	[0.9-1.5] months increase	Illumina [304226]	N
1389	chr6	105406273	105406274	rs17065417	28545128	McDaniel LD	2017-05-18	PLoS Genet	Common variants upstream of MLF1 at 3q25 and within CPZ at 4p16 associated with neuroblastoma.	Sporadic neuroblastoma	2,101 European ancestry child cases, 4,202 European ancestry controls	365 African American child cases, 2,491 African American controls, 427 European ancestry cases, 783 European ancestry controls, 371 cases, 1,122 controls	6q16.3	LIN28B	rs17065417-C	0.9	5E-9	(European American, conditioned on rs72990858)	1.4285715	[1.25-1.67]	Illumina [7968453] (imputed)	N
1389	chr6	105406273	105406274	rs17065417	22941191	Diskin SJ	2012-09-02	Nat Genet	Common variation at 6q16 within HACE1 and LIN28B influences susceptibility to neuroblastoma.	Neuroblastoma	2,101 European ancestry cases, 4,202 European ancestry controls	351 European ancestry cases, 780 European ancestry controls, 365 African American cases, 2,491 African American controls	6q16.3	LIN28B	rs17065417-A	0.89	1E-8		1.38	[1.23-1.54]	Illumina [426697]	N
1389	chr6	105407661	105407662	rs314277	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6q16.3	LIN28B	rs314277-A	NR	1E-8		0.0253175	[0.017-0.034] unit increase	Affymetrix [321114] (imputed)	N
1389	chr6	105407661	105407662	rs314277	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6q16.3	LIN28B	rs314277-A	NR	1E-12		0.028558	[0.021-0.036] unit increase	Affymetrix [321016] (imputed)	N
1389	chr6	105407661	105407662	rs314277	29659830	Warrington NM	2018-04-12	Hum Mol Genet	Genome-wide association study identifies nine novel loci for 2D:4D finger ratio, a putative retrospective biomarker of testosterone exposure in utero.	Digit length ratio (right hand)	12,636 European ancestry individuals	NA	6q16.3	LIN28B	rs314277-A	0.155	2E-19		0.498	[0.39-0.61] unit increase	Illumina [8400000] (imputed)	N
1389	chr6	105407661	105407662	rs314277	29659830	Warrington NM	2018-04-12	Hum Mol Genet	Genome-wide association study identifies nine novel loci for 2D:4D finger ratio, a putative retrospective biomarker of testosterone exposure in utero.	Digit length ratio (left hand)	14,382 European ancestry individuals, 1,279 non-European ancestry individuals	NA	6q16.3	LIN28B	rs314277-A	0.16	1E-18		0.404	[0.31-0.49] unit increase	Illumina [8400000] (imputed)	N
1389	chr6	105407661	105407662	rs314277	29659830	Warrington NM	2018-04-12	Hum Mol Genet	Genome-wide association study identifies nine novel loci for 2D:4D finger ratio, a putative retrospective biomarker of testosterone exposure in utero.	Digit length ratio (left hand)	14,382 European ancestry individuals, 1,279 non-European ancestry individuals	NA	6q16.3	LIN28B	rs314277-A	0.155	6E-18	(EA)	0.428	[0.33-0.53] unit increase	Illumina [8400000] (imputed)	N
1389	chr6	105407661	105407662	rs314277	29659830	Warrington NM	2018-04-12	Hum Mol Genet	Genome-wide association study identifies nine novel loci for 2D:4D finger ratio, a putative retrospective biomarker of testosterone exposure in utero.	Digit length ratio	12,586 European ancestry individuals	NA	6q16.3	LIN28B	rs314277-A	0.155	1E-21		0.476	[0.38-0.57] unit increase	Illumina [8400000] (imputed)	N
1389	chr6	105407661	105407662	rs314277	28560309	Lee E	2017-04-23	Alzheimers Dement (Amst)	Single-nucleotide polymorphisms are associated with cognitive decline at Alzheimer's disease conversion within mild cognitive impairment patients.	Accelerated cognitive decline after conversion of mild cognitive impairment to Alzheimer's disease (Alzhiemer's diagnosis trajectory interaction)	242 European ancestry individuals	NA	6q16.3	LIN28B	rs314277-?		5E-6				Illumina [5908215] (imputed)	N
1389	chr6	105407661	105407662	rs314277	20303062	Medland SE	2010-03-18	Am J Hum Genet	A variant in LIN28B is associated with 2D:4D finger-length ratio, a putative retrospective biomarker of prenatal testosterone exposure.	Digit length ratio	2,889 European ancestry children and adolescents	3,659 European ancestry children	6q16.3	LIN28B	rs314277-A	0.15	2E-6		0.63	[0.41-0.85] mean 2D:4D increase	Illumina [310613]	N
1389	chr6	105407661	105407662	rs314277	19448621	He C	2009-05-17	Nat Genet	Genome-wide association studies identify loci associated with age at menarche and age at natural menopause.	Menarche and menopause (age at onset)	17,438 European ancestry female individuals	NA	6q16.3	LIN28B	rs314277-A	0.14	3E-13	(age at menarche)	0.16	[0.12-0.20] years increase	Illumina [317759]	N
1389	chr6	105407661	105407662	rs314277	18391950	Lettre G	2008-04-06	Nat Genet	Identification of ten loci associated with height highlights new biological pathways in human growth.	Height	15,821 European ancestry individuals	Up to 17,801 European ancestry individuals	6q16.3	LIN28B	rs314277-A	0.13	1E-8		0.41	[0.26-0.59] cm increase	Affymetrix, Illumina [2260683] (imputed)	N
1389	chr6	105407998	105407999	rs314276	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6q16.3	LIN28B	rs314276-A	0.3263	2E-14		0.0553	[0.041-0.069] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1389	chr6	105407998	105407999	rs314276	24770850	Cousminer DL	2014-04-25	Hum Mol Genet	Genome-wide association study of sexual maturation in males and females highlights a role for body mass and menarche loci in male puberty.	Puberty onset	6,147 European ancestry girls, 3,769 European ancestry boys	Up to 1,376 European ancestry individuals	6q16.3	LIN28B	rs314276-C	0.66	2E-8		0.08	[0.053-0.107] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1389	chr6	105407998	105407999	rs314276	19448623	Ong KK	2009-05-17	Nat Genet	Genetic variation in LIN28B is associated with the timing of puberty.	Menarche (age at onset)	4,714 European ancestry female individuals	16,373 European ancestry female individuals	6q16.3	LIN28B	rs314276-C	0.67	4E-16		0.14	[0.11-0.17] year decrease	Affymetrix [up to 390631]	N
1389	chr6	105410047	105410048	rs167539	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6q16.3	LIN28B	rs167539-C	NR	1E-23		0.0327539	[0.026-0.039] unit increase	Affymetrix [323123] (imputed)	N
1389	chr6	105417977	105417978	rs314268	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6q16.3	LIN28B	rs314268-G	NR	3E-18		0.0259304	[0.02-0.032] unit increase	Affymetrix [321016] (imputed)	N
1389	chr6	105417977	105417978	rs314268	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	6q16.3	NR	rs314268-?	NR	2E-6		0.02793575	[0.016-0.039] unit decrease	Illumina [34656550] (imputed)	N
1389	chr6	105417977	105417978	rs314268	18391951	Gudbjartsson DF	2008-04-06	Nat Genet	Many sequence variants affecting diversity of adult human height.	Height	30,968 European ancestry individuals	8,541 European ancestry individuals	6q16.3	BVES, LIN28B, POPDC3, HACE1	rs314268-C	0.34	8E-7		4.6	[2.84-6.36] % s.d. increase	Affymetrix, Illumina [up to 304226]	N
1389	chr6	105429510	105429511	rs62419609	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6q16.3	NR	rs62419609-?	NR	2E-11				Affymetrix [~ 8270000] (imputed)	N
1389	chr6	105430933	105430934	rs314289	31972866	Nagel M	2020-01-23	Acta Psychiatr Scand	Genome-wide association study of the sensitivity to environmental stress and adversity (SESA) neuroticism cluster.	Sensitivity to environmental stress and adversity	351,827 European ancestry individuals	NA	6q16.3	NR	rs314289-C	NR	4E-8		0.01296	NR unit decrease	NR [7259579]	N
1389	chr6	105434077	105434078	rs314288	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6q16.3	LIN28B	rs314288-T	NR	7E-18		0.0415031	[0.032-0.051] unit increase	Affymetrix [323123] (imputed)	N
1389	chr6	105439335	105439336	rs314283	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms (MTAG)	354,862 European ancestry individuals	NA	6q16.3	NR	rs314283-C	0.5639	2E-8		0.0121	[0.008-0.0162] unit increase	Illumina [NR] (imputed)	N
1389	chr6	105443188	105443189	rs364663	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6q16.3	LIN28B	rs364663-A	0.557338	2E-9		0.013224364	[0.0089-0.0176] unit decrease	Affymetrix [93095623] (imputed)	N
1389	chr6	105443188	105443189	rs364663	23667675	Tanikawa C	2013-05-07	PLoS One	Genome wide association study of age at menarche in the Japanese population.	Menarche (age at onset)	15,495 Japanese ancestry females	NA	6q16.3	LIN28B	rs364663-A	0.72	5E-7		0.089	[0.054-0.124] year decrease	Illumina [2310762] (imputed)	N
1389	chr6	105453416	105453417	rs314261	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6q21	LIN28B	rs314261-A	NR	2E-15		0.0246874	[0.019-0.031] unit increase	Affymetrix [321114] (imputed)	N
1389	chr6	105453416	105453417	rs314261	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6q21		rs314261-?	NR	3E-10		0.0133438	[0.0093-0.0174] unit decrease	Affymetrix [20259828] (imputed)	N
1389	chr6	105462003	105462004	rs314272	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	6q21	LIN28B	rs314272-G	NR	3E-7	(EA)	1.0570824	[1.04-1.08]	Illumina [6627481] (imputed)	N
1389	chr6	105462003	105462004	rs314272	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	6q21	NR	rs314272-G	NR	1E-6		1.0526316	[NR]	Illumina [7158791] (imputed)	N
1389	chr6	105466331	105466332	rs160593	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	6q21		rs160593-G	0.44	3E-9		5.93	z score increase	Affymetrix [9061022] (imputed)	N
1389	chr6	105466331	105466332	rs160593	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	6q21	NR	rs160593-G	0.4397	4E-11				NR [9056863] (imputed)	N
1389	chr6	105466331	105466332	rs160593	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	6q21	NR	rs160593-?	NR	3E-10		1.0564348	[1.04-1.07]	Affymetrix, Illumina [12447948] (imputed)	N
1389	chr6	105466331	105466332	rs160593	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	6q21	LIN28B	rs160593-G	NR	2E-9		1.059322	[1.04-1.08]	Illumina [6627481] (imputed)	N
1389	chr6	105466331	105466332	rs160593	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	6q21	HACE1, LIN28B	rs160593-G	NR	8E-9		1.0559661	[1.04-1.07]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1389	chr6	105480693	105480694	rs221616	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6q21	NR	rs221616-?	NR	1E-12				Affymetrix [~ 8270000] (imputed)	N
1389	chr6	105488781	105488782	rs149246	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6q21	LIN28B	rs149246-C	NR	2E-8		0.0208459	[0.014-0.028] unit increase	Affymetrix [323123] (imputed)	N
1390	chr6	105554354	105554355	rs405956	29213071	Mendez-Giraldez R	2017-12-06	Sci Rep	GWAS of the electrocardiographic QT interval in Hispanics/Latinos generalizes previously identified loci and identifies population-specific signals.	QT interval	15,997 Hispanic/Latino individuals	NA	6q21	BVES	rs405956-A	0.85	2E-6		1.49	[0.88-2.1] ms decrease	Affymetrix, Illumina [up to 17586686] (imputed)	N
1390	chr6	105562140	105562141	rs117450486	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Negativibacillus massiliensis abundance in stool	5,959 Finnish ancestry individuals	NA	6q21		rs117450486-G	0.0338094	4E-8		0.121761	[0.078-0.165] unit increase	Illumina [7980478] (imputed)	N
1390	chr6	105583871	105583872	rs78139700	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Creatine kinase levels	106,080 Japanese ancestry individuals	NA	6q21	BVES	rs78139700-?	NR	4E-18		0.09867	[0.076-0.121] unit increase novel	Illumina [6108953] (imputed)	N
1390	chr6	105612219	105612220	rs11962089	21654844	Briggs FB	2011-06-09	Genes Immun	Genome-wide association study of severity in multiple sclerosis.	Multiple sclerosis	1,470 European ancestry cases	NA	6q21	POPDC3	rs11962089-G	0.16	8E-6	(Continuous)	0.69	[NR] unit decrease	Affymetrix [2110417] (imputed)	N
1391	chr6	105710718	105710719	rs2793409	34274964	Duijvenboden S	2021-07-19	Hum Mol Genet	Genomic and pleiotropic analyses of resting QT interval identifies novel loci and overlap with atrial electrical disorders.	QT interval	52,107 European ancestry individuals	48,997 individuals	6q21		rs2793409-A	0.1337	2E-13		0.79	[0.57-1.01] unit decrease	Affymetrix [9800000]	N
1391	chr6	105710718	105710719	rs2793409	34274964	Duijvenboden S	2021-07-19	Hum Mol Genet	Genomic and pleiotropic analyses of resting QT interval identifies novel loci and overlap with atrial electrical disorders.	QT interval	27,612 European ancestry women	NA	6q21		rs2793409-G	0.87	4E-7		0.044	[0.026-0.062] unit increase	Affymetrix [NR]	N
1391	chr6	105726035	105726036	rs1051484	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PREP	5,334 Icelandic ancestry individuals	NA	6q21		rs1051484-T	0.1592	1E-65		0.373325	[0.33-0.42] unit increase	Illumina [7506463] (imputed)	N
1391	chr6	105726035	105726036	rs1051484	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6q21	PREP	rs1051484-C	0.83515625	7E-44	(PREP, 14273_19_3)	0.45330265	[0.39-0.52] unit decrease	Illumina [> 1000000] (imputed)	N
1392	chr6	105775151	105775152	rs12189723	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PREP	5,334 Icelandic ancestry individuals	NA	6q21		rs12189723-G	0.1454	5E-15		0.179611	[0.13-0.22] unit decrease	Illumina [7506463] (imputed)	N
1392	chr6	105786659	105786660	rs4478445	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q21	PREP	rs4478445-C	0.935282	7E-9	(-100 ms)	0.0659676	[0.043-0.089] unit decrease	Affymetrix [10000000] (imputed)	N
1392	chr6	105786659	105786660	rs4478445	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q21	PREP	rs4478445-C	0.935282	5E-9	(-118 ms)	0.0682125	[0.046-0.091] unit decrease	Affymetrix [10000000] (imputed)	N
1392	chr6	105786659	105786660	rs4478445	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q21	PREP	rs4478445-C	0.935282	3E-9	(250 ms)	0.0705286	[0.048-0.093] unit increase	Affymetrix [10000000] (imputed)	N
1392	chr6	105786659	105786660	rs4478445	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q21	PREP	rs4478445-C	0.935282	3E-9	(-110 ms)	0.0675999	[0.045-0.09] unit decrease	Affymetrix [10000000] (imputed)	N
1392	chr6	105786659	105786660	rs4478445	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q21	PREP	rs4478445-C	0.935282	3E-9	(-106 ms)	0.0663206	[0.044-0.089] unit decrease	Affymetrix [10000000] (imputed)	N
1392	chr6	105786659	105786660	rs4478445	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q21	PREP	rs4478445-C	0.935282	3E-8	(-122 ms)	0.0652646	[0.043-0.088] unit decrease	Affymetrix [10000000] (imputed)	N
1392	chr6	105786659	105786660	rs4478445	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q21	PREP	rs4478445-C	0.935282	2E-9	(-112 ms)	0.0684804	[0.046-0.091] unit decrease	Affymetrix [10000000] (imputed)	N
1392	chr6	105786659	105786660	rs4478445	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q21	PREP	rs4478445-C	0.935282	2E-8	(-96 ms)	0.0644565	[0.042-0.087] unit decrease	Affymetrix [10000000] (imputed)	N
1392	chr6	105786659	105786660	rs4478445	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q21	PREP	rs4478445-C	0.935282	2E-8	(-120 ms)	0.0660085	[0.043-0.089] unit decrease	Affymetrix [10000000] (imputed)	N
1392	chr6	105786659	105786660	rs4478445	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q21	PREP	rs4478445-C	0.935282	1E-9	(-116 ms)	0.0700395	[0.047-0.093] unit decrease	Affymetrix [10000000] (imputed)	N
1392	chr6	105786659	105786660	rs4478445	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q21	PREP	rs4478445-C	0.935282	1E-9	(-114 ms)	0.0699967	[0.047-0.093] unit decrease	Affymetrix [10000000] (imputed)	N
1392	chr6	105786659	105786660	rs4478445	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q21	PREP	rs4478445-C	0.935282	1E-9	(-108 ms)	0.0682156	[0.046-0.091] unit decrease	Affymetrix [10000000] (imputed)	N
1392	chr6	105786659	105786660	rs4478445	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q21	PREP	rs4478445-C	0.935282	1E-8	(248 ms)	0.0679159	[0.045-0.091] unit increase	Affymetrix [10000000] (imputed)	N
1392	chr6	105786659	105786660	rs4478445	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q21	PREP	rs4478445-C	0.935282	1E-8	(-98 ms)	0.0646739	[0.042-0.087] unit decrease	Affymetrix [10000000] (imputed)	N
1392	chr6	105786659	105786660	rs4478445	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q21	PREP	rs4478445-C	0.935282	1E-8	(-124 ms)	0.0665212	[0.044-0.089] unit decrease	Affymetrix [10000000] (imputed)	N
1392	chr6	105786659	105786660	rs4478445	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q21	PREP	rs4478445-C	0.935282	1E-8	(-104 ms)	0.0649756	[0.042-0.088] unit decrease	Affymetrix [10000000] (imputed)	N
1392	chr6	105786659	105786660	rs4478445	31607149	Ramirez J	2019-10-14	Circ Arrhythm Electrophysiol	Cardiovascular Predictive Value and Genetic Basis of Ventricular Repolarization Dynamics.	T wave morphology restitution during exercise (MTAG)	51,574 European ancestry individuals	NA	6q21	PREP	rs4478445-C	0.943	4E-8		0.067	[0.043-0.091] unit decrease	NR [~ 9000000] (imputed)	N
1392	chr6	105786659	105786660	rs4478445	31607149	Ramirez J	2019-10-14	Circ Arrhythm Electrophysiol	Cardiovascular Predictive Value and Genetic Basis of Ventricular Repolarization Dynamics.	T wave morphology restitution during exercise	51,574 European ancestry individuals	NA	6q21	PREP	rs4478445-C	0.943	8E-7		0.059	[0.035-0.083] unit decrease	NR [~ 9000000] (imputed)	N
1392	chr6	105831369	105831370	rs117269303	32180562	Kulyte A	2020-01-25	Mol Metab	Genome-wide association study of adipocyte lipolysis in the GENetics of adipocyte lipolysis (GENiAL) cohort.	Stimulated adipocyte lipolysis	874 European ancestry individuals	NA	6q21	NR	rs117269303-C	0.985263	4E-6		0.263	[0.15-0.37] unit decrease	NR [9260588] (imputed)	N
1392	chr6	105859166	105859167	rs9486080	27611488	Almoguera B	2016-09-09	Am J Respir Crit Care Med	Identification of Four Novel Loci in Asthma in European American and African American Populations.	Asthma	819 African American non-allergic asthma cases, 2,218 African American allergic asthma cases 4,360 African American controls, 808 European American non-allergic asthma cases, 1,464 European American allergic asthma cases, 11,975 European American controls	NA	6q21	PREP	rs9486080-?		7E-6	(AA)	0.21	[0.079-0.341] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1393	chr6	105907954	105907955	rs12196063	30014611	Weiss RB	2018-07-16	Ann Neurol	Long-range genomic regulators of THBS1 and LTBP4 modify disease severity in Duchenne muscular dystrophy.	Age at loss of ambulation in Duchenne muscular dystrophy	243 European ancestry cases, 10 cases	NA	6q21	NR	rs12196063-?	NR	8E-6				Illumina [1735619]	N
1393	chr6	105925144	105925145	rs150876559	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,931 Sub-Saharan African ancestry males	NA	6q21		rs150876559-A	0.988082	6E-6		0.0567224	[0.031-0.082] unit decrease	Illumina [13900000] (imputed)	N
1393	chr6	105956151	105956152	rs118103567	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Desulfovibrio piger abundance in stool	5,959 Finnish ancestry individuals	NA	6q21		rs118103567-C	0.0182752	3E-8		0.359571	[0.23-0.49] unit increase	Illumina [7980478] (imputed)	N
1393	chr6	105966893	105966894	rs6928864	31089142	Law PJ	2019-05-14	Nat Commun	Association analyses identify 31 new risk loci for colorectal cancer susceptibility.	Colorectal cancer	31,197 European ancestry cases, 61,770 European ancestry controls	NA	6q21	NR	rs6928864-C	0.91	1E-8		1.13	[1.09-1.19]	Affymetrix, Illumina [> 10000000] (imputed)	N
1393	chr6	105973865	105973866	rs6939130	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	6q21	NR	rs6939130-G	0.0298665	5E-24		0.0925347	[0.075-0.11] unit increase	NR [19129689] (imputed)	N
1393	chr6	105997675	105997676	rs11152896	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6q21	POPDC3	rs11152896-?	NR	6E-6	(isocitrate)	0.28487548	[0.16-0.41] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1393	chr6	106008067	106008068	rs9372092	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	6q21	NR	rs9372092-T	0.0697223	1E-11		0.0418709	[0.03-0.054] unit decrease	NR [19129689] (imputed)	N
1393	chr6	106017975	106017976	rs10457128	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-10 levels	7,681 Finnish ancestry individuals	NA	6q21	NR	rs10457128-G		5E-7		0.0865	[0.053-0.12] SD units increase	NR [10700000] (imputed)	N
1393	chr6	106036060	106036061	rs10457129	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	6q21	NR	rs10457129-A	0.487961	6E-40		0.0416453	[0.035-0.048] unit decrease	NR [19129689] (imputed)	N
1393	chr6	106036150	106036151	rs6901317	26926045	Adhikari K	2016-03-01	Nat Commun	A genome-wide association scan in admixed Latin Americans identifies loci influencing facial and scalp hair features.	Beard thickness	2,922 Latin American individuals	NA	6q21	PREP	rs6901317-?	NR	4E-8				Illumina [9143600] (imputed)	N
1394	chr6	106039389	106039390	rs12664003	32339537	Roberts V	2020-04-24	J Invest Dermatol	Genome wide association study identifies genetic associations with perceived age.	Youthful appearance (self-reported)	423,992 European ancestry individuals	NA	6q21	PREP	rs12664003-C	0.515857	2E-9		1.0263427	NR	Affymetrix [~ 9600000] (imputed)	N
1394	chr6	106040226	106040227	rs17804660	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	6q21		rs17804660-?	NR	2E-27				NR [~ 8900000] (imputed)	N
1394	chr6	106041381	106041382	rs9398035	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		6q21	NR	rs9398035-C	NR	4E-11		0.0407384	NR unit increase	NR [NR] (imputed)	N
1394	chr6	106044348	106044349	rs6918008	32503578	Yang DW	2020-06-05	J Transl Med	Genome-wide association study identifies genetic susceptibility loci and pathways of radiation-induced acute oral mucositis.	Response to radiotherapy in nasopharyngeal carcinoma (acute oral mucositis)	349 East Asian ancestry cases, 1,118 East Asian ancestry treated controls	NA	6q21	NR	rs6918008-?	NR	7E-6				Illumina [3968928] (imputed)	N
1394	chr6	106089960	106089961	rs183762395	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Periventricular white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	6q21	RP3-359N14.2	rs183762395-T	0.0138	3E-7		0.1457	[0.09-0.202] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1394	chr6	106094056	106094057	rs9386463	20195514	Pillas D	2010-02-26	PLoS Genet	Genome-wide association study reveals multiple loci associated with primary tooth development during infancy.	Primary tooth development (time to first tooth eruption)	5,919 European ancestry related individuals	NA	6q21	intergenic	rs9386463-G	0.45	6E-7				Illumina [300766]	N
1394	chr6	106123951	106123952	rs845856	33223526	Hong S	2020-11-22	Transl Psychiatry	Genome-wide association study of Alzheimer's disease CSF biomarkers in the EMIF-AD Multimodal Biomarker Discovery dataset.	Central cerebrospinal fluid amyloid beta 42 to 40 ratio	677 European ancestry individuals	NA	6q21		rs845856-G	0.8696	5E-6		0.058	[0.033-0.083] unit decrease	Illumina [7778465] (imputed)	N
1395	chr6	106182240	106182241	rs75502766	33824429	Fjukstad KK	2021-04-06	Pharmacogenomics J	Genetic variants associated with cardiometabolic abnormalities during treatment with selective serotonin reuptake inhibitors: a genome-wide association study.	Triglyceride levels x SSRI levels (escitalopram or citalopram) interaction in schizophrenia or bipolar disorder	181 European ancestry individuals	NA	6q21	RP3-359N14.1	rs75502766-C	NR	4E-6			[NR]	Illumina [NR] (imputed)	N
1395	chr6	106183998	106183999	rs9480594	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	6q21	NR	rs9480594-T	0.0626828	8E-10		0.040101	[0.027-0.053] unit decrease	NR [19129689] (imputed)	N
1395	chr6	106188817	106188818	rs6568401	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 19)	4,680 European ancestry individuals	3,566 European ancestry individuals	6q21		rs6568401-C	0.256990032	5E-8				Illumina [7417619] (imputed)	N
1395	chr6	106188817	106188818	rs6568401	23704328	Fatemifar G	2013-05-23	Hum Mol Genet	Genome-wide association study of primary tooth eruption identifies pleiotropic loci associated with height and craniofacial distances.	Primary tooth development (time to first tooth eruption)	11,118 European ancestry individuals		6q21	NA	rs6568401-C	NR	2E-10		0.19	[0.13-0.25] unit decrease	Illumina [2446724] (imputed)	N
1395	chr6	106201607	106201608	rs4946689	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		6q21	NR	rs4946689-A	NR	3E-11		0.0576623	NR unit increase	NR [NR] (imputed)	N
1395	chr6	106207920	106207921	rs12214131	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	6q21		rs12214131-?	NR	4E-30				NR [~ 8900000] (imputed)	N
1395	chr6	106207920	106207921	rs12214131	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	6q21	NR	rs12214131-A	0.366003	2E-32		0.0388749	[0.032-0.045] unit increase	NR [19129689] (imputed)	N
1395	chr6	106207920	106207921	rs12214131	29146897	Pirastu N	2017-11-17	Nat Commun	GWAS for male-pattern baldness identifies 71 susceptibility loci explaining 38% of the risk.	Male-pattern baldness	25,662 British ancestry cases, 17,928 British ancestry controls	13,367 European ancestry cases, 11,851 European ancestry controls, 3,436 cases, 2,435 controls	6q21	intergenic	rs12214131-G	NR	9E-14		0.108791	[0.08-0.137] unit increase	Affymetrix [27512692] (imputed)	N
1395	chr6	106207920	106207921	rs12214131	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		6q21	NR	rs12214131-A	NR	2E-15		0.0508054	NR unit increase	NR [NR] (imputed)	N
1395	chr6	106237504	106237505	rs2202766	29367611	Gao B	2018-01-24	Sci Rep	Genome-wide association study of paclitaxel and carboplatin disposition in women with epithelial ovarian cancer.	Carboplatin disposition in epthelial ovarian cancer	42 European ancestry cases, 14 Asian ancestry cases	NA	6q21	PREP, PRDM1	rs2202766-?	NR	7E-6	(adjusted for dose, GFR & AST)	1.47	unit decrease (EA)	Illumina [610255]	N
1395	chr6	106252998	106252999	rs1355023	23326517	Holliday EG	2013-01-11	PLoS One	Insights into the genetic architecture of early stage age-related macular degeneration: a genome-wide association study meta-analysis.	Age-related macular degeneration	3,772 European ancestry cases, 16,033 European ancestry controls	264 Asian ancestry cases, 3,926 Asian ancestry controls	6q21	intergenic	rs1355023-T	0.69	6E-6		1.13	[1.07-1.20]	Affymetrix, Illumina [~ 2500000] (imputed)	N
1395	chr6	106255701	106255702	rs1911740	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	6q21	NR	rs1911740-G	0.110833	2E-15		0.0388999	[0.029-0.049] unit decrease	NR [19129689] (imputed)	N
1395	chr6	106260127	106260128	rs7750345	23326517	Holliday EG	2013-01-11	PLoS One	Insights into the genetic architecture of early stage age-related macular degeneration: a genome-wide association study meta-analysis.	Age-related macular degeneration	3,772 European ancestry cases, 16,033 European ancestry controls	264 Asian ancestry cases, 3,926 Asian ancestry controls	6q21	intergenic	rs7750345-A	0.75	7E-6	(EA)	1.16	[1.09-1.24]	Affymetrix, Illumina [~ 2500000] (imputed)	N
1395	chr6	106261768	106261769	rs17066362	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	6q21	PREP	rs17066362-T	NR	1E-6		1.0919	NR	Affymetrix, Illumina [8278136] (imputed)	N
1396	chr6	106317195	106317196	rs9372110	30514930	Mukherjee S	2018-12-04	Mol Psychiatry	Genetic data and cognitively defined late-onset Alzheimer's disease subgroups.	Alzheimer's disease with visuospatial domain impairment	Up to 497 European ancestry cases, 3,447 European ancestry controls	NA	6q21	NR	rs9372110-A	0.06	2E-7		2.16	[1.87-2.45]	NR [up to 6398204] (imputed)	N
1396	chr6	106320459	106320460	rs72613226	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	6q21	NR	rs72613226-G	0.129283	8E-19		0.0407947	[0.032-0.05] unit decrease	NR [19129689] (imputed)	N
1396	chr6	106320770	106320771	rs72613227	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	NA	6q21	PRDM1	rs72613227-A	0.8731	4E-11		0.1884	[0.13-0.24] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1396	chr6	106321843	106321844	rs9480610	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6q21		rs9480610-A	0.22765500000000005	1E-37		1.0663598	[1.05-1.08]	Affymetrix, Illumina [9851866] (imputed)	N
1396	chr6	106322446	106322447	rs566927912	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	6q21	RN7SKP211	rs566927912-A	0.0018	4E-6		2.0877	[1.2-2.97] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1396	chr6	106325384	106325385	rs9399955	30715261	Brouwer WP	2019-02-02	Clin Infect Dis	Genome Wide Association Study Identifies Genetic Variants Associated With Early And Sustained Response To (Peg)Interferon In Chronic Hepatitis B Patients: The GIANT-B Study.	Response to (pegylated) interferon in HBeAG-positive hepatitis B	121 Asian, European, African and other ancestry cases, 388 Asian, European, African and other ancestry controls	NA	6q21	PRDM1, PREP, RN7SKP211	rs9399955-T	0.08606	4E-6		1.422	[0.82-2.03] unit increase	Illumina [8102086] (imputed)	N
1396	chr6	106329054	106329055	rs9386485	23648065	Low SK	2013-05-04	Cancer Sci	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (paclitaxel)	218 Japanese ancestry cases, 364 Japanese controls	NA	6q21	PRDM1	rs9386485-T	0.477	1E-6	(Allelic model)	1.821	[1.429-2.32]	Illumina [733202]	N
1396	chr6	106329054	106329055	rs9386485	23648065	Low SK	2013-05-04	Cancer Sci	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (all antimicrotubule drugs)	371 Japanese ancestry cases, 825 Japanese ancestry controls	NA	6q21	PRDM1	rs9386485-T	0.492	3E-6	(Allelic model)	1.524	[1.279-1.817]	Illumina [733202]	N
1396	chr6	106331727	106331728	rs9689308	30787463	Escala-Garcia M	2019-02-21	Br J Cancer	Genome-wide association study of germline variants and breast cancer-specific mortality.	Breast cancer specific mortality in breast cancer	7,697 European ancestry cases, 88,964 European ancestry controls	NA	6q21	NR	rs9689308-?	NR	6E-6		1.0898786	[1.05-1.13]	Affymetrix, Illumina [~ 10400000] (imputed)	N
1396	chr6	106347946	106347947	rs7750292	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6q21		rs7750292-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1396	chr6	106356045	106356046	rs10456852	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	6q21		rs10456852-T	NR	1E-12		0.0263	[0.019-0.034] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
1396	chr6	106356045	106356046	rs10456852	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	6q21	NR	rs10456852-T	NR	8E-13		0.027	[0.02-0.034] unit increase	Affymetrix [9000000] (imputed)	N
1396	chr6	106374014	106374015	rs4946713	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	6q21	C6orf203	rs4946713-?	NR	2E-8		0.0145	[0.01-0.019] unit decrease	Affymetrix [5701386] (imputed)	N
1396	chr6	106378008	106378009	rs6913325	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	6q21		rs6913325-T	NR	5E-9		0.0119	[0.008-0.0158] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
1396	chr6	106378008	106378009	rs6913325	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	6q21	PRDM1	rs6913325-G	0.547681	3E-8		0.0110602	[0.0071-0.015] unit increase	Affymetrix [NR] (imputed)	N
1397	chr6	106435024	106435025	rs6568421	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	6q21	intergenic	rs6568421-G	0.301	8E-20		1.108	[1.074-1.142]	Affymetrix, Illumina [1230000] (imputed)	N
1397	chr6	106435024	106435025	rs6568421	21102463	Franke A	2010-11-21	Nat Genet	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry trios	6q21	PRDM1	rs6568421-G	0.301	4E-8		1.13	[1.07-1.18]	Affymetrix, Illumina [953241] (imputed)	N
1397	chr6	106435268	106435269	rs7746082	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	6q21	Intergenic	rs7746082-?		9E-13				Illumina [9725440] (imputed)	N
1397	chr6	106435268	106435269	rs7746082	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	6q21	Intergenic	rs7746082-?		2E-12				Illumina [9560910] (imputed)	N
1397	chr6	106435268	106435269	rs7746082	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	6q21	NR	rs7746082-C	0.2869	2E-7	(EA)	1.0753639	[1.05-1.1]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1397	chr6	106435268	106435269	rs7746082	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	6q21	NR	rs7746082-C	0.2869	3E-23	(EA)	1.1415608	[1.12-1.17]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1397	chr6	106435268	106435269	rs7746082	18587394	Barrett JC	2008-06-29	Nat Genet	Genome-wide association defines more than 30 distinct susceptibility loci for Crohn's disease.	Crohn's disease	3,230 European ancestry cases, 4,829 European ancestry controls	1,339 European ancestry trios, 2,325 European ancestry cases, 1,809 European ancestry controls	6q21	Unknown	rs7746082-C	0.29	2E-10		1.17	[NR]	Affymetrix, Illumina [635547] (imputed)	N
1397	chr6	106455880	106455881	rs72941618	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	6q21	NR	rs72941618-T	0.0569671	1E-9		0.0399699	[0.027-0.053] unit decrease	NR [19129689] (imputed)	N
1397	chr6	106469890	106469891	rs6937414	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	6q21	NR	rs6937414-?	NR	3E-6				Affymetrix [NR]	N
1397	chr6	106470301	106470302	rs67542176	30070759	Olsson M	2018-08-02	J Thromb Haemost	Genome-wide analysis of genetic determinants of circulating factor VII activating protease (FSAP) activity.	Plasma factor VII activating protease levels	3,126 Swedish ancestry individuals	NA	6q21	Intergenic	rs67542176-?		8E-6		32.0	[17.89-46.11] unit decrease	Illumina [~ 10000000] (imputed)	N
1397	chr6	106474748	106474749	rs4946717	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	6q21	intergenic	rs4946717-?	NR	1E-21	(subset analysis)			Illumina [130052]	N
1397	chr6	106474748	106474749	rs4946717	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	6q21	NR	rs4946717-?	NR	4E-22	(EA)			Affymetrix, Illumina [~ 9000000] (imputed)	N
1397	chr6	106522026	106522027	rs6911490	21297633	Anderson CA	2011-02-06	Nat Genet	Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47.	Ulcerative colitis	6,687 European ancestry cases, 19,718 European ancestry controls	9,628 European ancestry cases, 12,917 European ancestry controls	6q21	PDRM1	rs6911490-T	0.21	1E-8		1.08	[1.03-1.13]	Affymetrix, Illumina [~ 1100000] (imputed)	N
1397	chr6	106530329	106530330	rs28701841	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	6q21	PRDM1	rs28701841-?	NR	6E-10	(subset analysis)			Illumina [130052]	N
1397	chr6	106538726	106538727	rs56886418	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	6q21	PRDM1	rs56886418-?	NR	2E-6	(AA)	1.21	[1.12-1.31]	Illumina [at least 5000000] (imputed)	N
1398	chr6	106563271	106563272	rs58550282	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	6q21		rs58550282-A	0.196676	1E-9		0.017155724	[0.012-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1398	chr6	106563271	106563272	rs58550282	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6q21		rs58550282-A	0.196676	3E-17		0.023671389	[0.018-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1398	chr6	106563271	106563272	rs58550282	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	6q21	NR	rs58550282-A	0.196978	2E-17		0.021308	[0.016-0.026] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1398	chr6	106563611	106563612	rs58926232	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	8,021 European ancestry cases, 16,489 European ancestry controls	NA	6q21		rs58926232-G	NR	7E-7		0.13657	[0.083-0.19] unit increase	NR [5054572] (imputed)	N
1398	chr6	106568033	106568034	rs548234	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	Systemic lupus erythematosus	1,639 East Asian ancestry cases, 2,410 East Asian ancestry controls	NA	6q21	NR	rs548234-G	NR	3E-6				Illumina [NR] (imputed)	N
1398	chr6	106568033	106568034	rs548234	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6q21	PRDM1	rs548234-T	0.705	6E-39		0.819	[0.79-0.85]	Illumina [11270530] (imputed)	N
1398	chr6	106568033	106568034	rs548234	19838193	Han JW	2009-10-18	Nat Genet	Genome-wide association study in a Chinese Han population identifies nine new susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	1,047 Han Chinese ancestry cases, 1,205 Han Chinese ancestry controls	3,152 Han Chinese ancestry cases, 7,050 Han Chinese ancestry controls	6q21	PRDM1, ATG5	rs548234-G	0.26	5E-12		1.25	[1.17-1.33]	Illumina [493955]	N
1398	chr6	106569269	106569270	rs802791	30573655	Acosta-Herrera M	2018-12-20	Ann Rheum Dis	Genome-wide meta-analysis reveals shared new loci in systemic seropositive rheumatic diseases.	Systemic seropositive rheumatic diseases (Systemic sclerosis or systemic lupus erythematosus or rheumatoid arthritis or idiopathic inflammatory myopathies)	up to 4,595 European ancestry rheumatoid arthritis cases, up to 3,154 European ancestry systemic lupus erythematosus cases, up to 2,281 European ancestry systemic sclerosis cases, up to 1,674 European ancestry idiopathic inflammatory myopathy cases, 19,704 European ancestry controls	NA	6q21	PRDM1-ATG5	rs802791-?	NR	4E-12		1.1494253	[1.09-1.2]	Illumina [6450125] (imputed)	N
1398	chr6	106570055	106570056	rs526531	24097067	Lessard CJ	2013-11-01	Nat Genet	Variants at multiple loci implicated in both innate and adaptive immune responses are associated with Sjogren's syndrome.	Sjogren's syndrome	395 European ancestry cases, 1,975 European ancestry controls	1,243 European ancestry cases, 4,779 European ancestry controls	6q21	PRDM1	rs526531-A	0.31	3E-6		1.22	[1.09-1.38]	Illumina [648937]	N
1398	chr6	106570627	106570628	rs504045	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q21	NR	rs504045-G	0.369319	5E-15				Affymetrix, Illumina [23472807] (imputed)	N
1398	chr6	106577367	106577368	rs4134466	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	2,495 East Asian ancestry cases, 4,283 East Asian ancestry controls	NA	6q21		rs4134466-A	NR	7E-7		0.203547	[0.12-0.28] unit increase	NR [5275424] (imputed)	N
1398	chr6	106577367	106577368	rs4134466	28314753	Terao C	2017-03-17	Ann Rheum Dis	Transethnic meta-analysis identifies GSDMA and PRDM1 as susceptibility genes to systemic sclerosis.	Systemic sclerosis	700 Japanese ancestry cases, 1,797 Japanese ancestry controls, 564 European ancestry cases, 1,776 European ancestry controls	564 Japanese ancestry cases, 1,863 Japanese ancestry controls, 2,592 European ancestry cases, 9,315 European ancestry controls	6q21	BLIMP1, PRDM1	rs4134466-G	NR	7E-10		0.16	[0.11-0.21] unit decrease	Illumina [3610917] (imputed)	N
1398	chr6	106577693	106577694	rs9373834	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	6q21		rs9373834-?	NR	7E-8				NR [~ 8900000] (imputed)	N
1398	chr6	106582919	106582920	rs742108	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	8,021 European ancestry cases, 16,489 European ancestry controls, 2,495 East Asian ancestry cases, 4,283 East Asian ancestry controls	NA	6q21		rs742108-A	NR	3E-8		0.131643	[0.085-0.178] unit increase	NR [2787054] (imputed)	N
1398	chr6	106582919	106582920	rs742108	23273568	Yang W	2012-12-27	Am J Hum Genet	Meta-analysis followed by replication identifies loci in or near CDKN1B, TET3, CD80, DRAM1, and ARID5B as associated with systemic lupus erythematosus in Asians.	Systemic lupus erythematosus	1,656 Han Chinese ancestry cases, 3,394 Han Chinese ancestry controls	3,256 Han Chinese ancestry cases, 5,667 Han Chinese ancestry controls, 453 Thai ancestry cases, 963 Thai ancestry controls	6q21	PRDM1, ATG5	rs742108-T	0.34	4E-6		1.24		Illumina [2100739] (imputed)	N
1398	chr6	106583223	106583224	rs113835330	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	6q21	NR	rs113835330-?	NR	3E-8				Illumina [7760689] (imputed)	N
1398	chr6	106588613	106588614	rs7759216	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	6q21	Intergenic	rs7759216-?	NR	5E-6		1.3577732	[NR]	Affymetrix [492217] (imputed)	N
1398	chr6	106588805	106588806	rs6568431	33230199	Okada D	2020-11-23	J Hum Genet	Genome-wide association study of individual differences of human lymphocyte profiles using large-scale cytometry data.	T cell lymphocyte profile difference	298 individuals	NA	6q21	NR	rs6568431-?	NR	1E-8			[NR]	NR [1665663]	N
1398	chr6	106588805	106588806	rs6568431	27399966	Morris DL	2016-07-11	Nat Genet	Genome-wide association meta-analysis in Chinese and European individuals identifies ten new loci associated with systemic lupus erythematosus.	Systemic lupus erythematosus	1,659 Chinese ancestry cases, 3,398 Chinese ancestry controls, 4,036 European ancestry cases, 6,959 European ancestry controls	3,043 Chinese ancestry cases, 5,074 Chinese ancestry controls, 2,643 European ancestry cases, 9,032 European ancestry controls	6q21	PRDM1, ATG5	rs6568431-?	0.376	4E-12	(EA)	1.22	[NR]	NR [6344733] (imputed)	N
1398	chr6	106588805	106588806	rs6568431	27399966	Morris DL	2016-07-11	Nat Genet	Genome-wide association meta-analysis in Chinese and European individuals identifies ten new loci associated with systemic lupus erythematosus.	Systemic lupus erythematosus	1,659 Chinese ancestry cases, 3,398 Chinese ancestry controls, 4,036 European ancestry cases, 6,959 European ancestry controls	3,043 Chinese ancestry cases, 5,074 Chinese ancestry controls, 2,643 European ancestry cases, 9,032 European ancestry controls	6q21	PRDM1, ATG5	rs6568431-?	0.347	3E-6	(Chinese)	1.24	[NR]	NR [6344733] (imputed)	N
1398	chr6	106588805	106588806	rs6568431	27193031	Marquez A	2016-05-18	Ann Rheum Dis	A combined large-scale meta-analysis identifies COG6 as a novel shared risk locus for rheumatoid arthritis and systemic lupus erythematosus.	Systemic lupus erythematosus or rheumatoid arthritis	2,237 European ancestry systemic lupus erythematosus cases, 3,911 European ancestry rheumatoid arthritis cases, 10,398 European ancestry controls	1,957 European ancestry systemic lupus erythematosus cases, 13,641 European ancestry rheumatoid arthritis cases, 36,509 European ancestry controls	6q21	ATG5	rs6568431-?		1E-7	(same effect)	1.14	[NR]	NR [at least 309839] (imputed)	N
1398	chr6	106588805	106588806	rs6568431	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	NA	6q21	PRDM1, ATG5	rs6568431-A		5E-14		1.2	[NR]	Illumina [> 644674] (imputed)	N
1398	chr6	106588805	106588806	rs6568431	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	2,018 European ancestry cases, 6,925 European ancestry controls	6q21	PRDM1, ATG5	rs6568431-A		5E-14		1.21	[1.15-1.27]	Illumina [644674]	N
1398	chr6	106588805	106588806	rs6568431	19838195	Gateva V	2009-11-01	Nat Genet	A large-scale replication study identifies TNIP1, PRDM1, JAZF1, UHRF1BP1 and IL10 as risk loci for systemic lupus erythematosus.	Systemic lupus erythematosus	1,310 European ancestry cases, 7,859 European ancestry controls	1,963 European ancestry cases, 4,329 European ancestry controls	6q21	PRDM1	rs6568431-A	0.38	7E-10		1.2	[1.14-1.27]	Illumina [~ 2100000] (imputed)	N
1398	chr6	106601164	106601165	rs9398069	35132056	Mitchell BL	2022-02-07	Nat Commun	Genome-wide association meta-analysis identifies 29 new acne susceptibility loci.	acne vulgaris	20,165 European ancestry cases, 595,231 European ancestry controls	NA	6q21	NR	rs9398069-T	0.6127	1E-9		1.08	[1.05-1.1]	Affymetrix, Illumina [7072771] (imputed)	N
1398	chr6	106613529	106613530	rs61123157	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	6q21	NR	rs61123157-?	NR	2E-25				Illumina [at least 7383741] (imputed)	N
1398	chr6	106613529	106613530	rs61123157	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Monobrow	69,284 European ancestry individuals	NA	6q21	PRDM1, ATG5	rs61123157-?	NR	5E-14		0.028	[0.021-0.035] unit increase	Illumina [12039491] (imputed)	N
1398	chr6	106613762	106613763	rs35342892	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6q21	NR	rs35342892-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
1398	chr6	106623390	106623391	rs9398070	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	6q21		rs9398070-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1398	chr6	106623390	106623391	rs9398070	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	6q21	NR	rs9398070-T	0.39102	5E-18		0.0272972	[0.021-0.033] unit increase	NR [19129689] (imputed)	N
1398	chr6	106627446	106627447	rs75188390	32339537	Roberts V	2020-04-24	J Invest Dermatol	Genome wide association study identifies genetic associations with perceived age.	Youthful appearance (self-reported)	423,992 European ancestry individuals	NA	6q21	ATG5	rs75188390-A	0.878959	4E-8		1.037339	NR	Affymetrix [~ 9600000] (imputed)	N
1398	chr6	106655417	106655418	rs9399978	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	6q21	ATG5	rs9399978-G	0.205492	2E-14		0.020919874	[0.016-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1398	chr6	106655417	106655418	rs9399978	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6q21	ATG5	rs9399978-G	0.205483	1E-14		0.021194922	[0.016-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1398	chr6	106655616	106655617	rs9373839	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	6q21	ATG5	rs9373839-?	NR	4E-15		1.19	[1.12-1.26]	Illumina [at least 5000000] (imputed)	N
1398	chr6	106655616	106655617	rs9373839	24387989	Mayes MD	2014-01-02	Am J Hum Genet	Immunochip analysis identifies multiple susceptibility loci for systemic sclerosis.	Systemic sclerosis	671 European ancestry ACA-positive cases, 347 European ancestry ATA-positive cases, 815 European ancestry cases, 3,466 European ancestry controls	1,387 European ancestry ACA-positive cases, 896 European ancestry ATA-positive cases, 1,734 European ancestry cases, 5,935 European ancestry controls	6q21	ATG5	rs9373839-G	0.1893	4E-8		1.1895		Illumina [126270]	N
1398	chr6	106655616	106655617	rs9373839	24387989	Mayes MD	2014-01-02	Am J Hum Genet	Immunochip analysis identifies multiple susceptibility loci for systemic sclerosis.	Limited cutaneous systemic scleroderma	1,127 European ancestry cases, 3,466 European ancestry controls	2,507 European ancestry cases, 5,935 European ancestry controls	6q21	ATG5	rs9373839-G	0.1893	8E-7		1.1966		Illumina [126270]	N
1398	chr6	106662740	106662741	rs2245214	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6q21	NR	rs2245214-?	NR	4E-11				Affymetrix [~ 8270000] (imputed)	N
1398	chr6	106667534	106667535	rs9372120	33875642	Duran-Lozano L	2021-04-19	Blood Cancer J	Germline variants at SOHLH2 influence multiple myeloma risk.	Multiple myeloma	4,376 European ancestry cases, 345,887 European ancestry controls	5,598 European ancestry cases, 15,261 European ancestry controls	6q21	ATG5	rs9372120-G	0.19	2E-6		1.14	[NR]	Illumina [33000000] (imputed)	N
1398	chr6	106667534	106667535	rs9372120	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q21	NR	rs9372120-G	0.181494	4E-15				Affymetrix, Illumina [19872809] (imputed)	N
1398	chr6	106667534	106667535	rs9372120	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	6q21	NR	rs9372120-G	0.207596	1E-17		0.02093	[0.016-0.026] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
1398	chr6	106667534	106667535	rs9372120	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	6q21	ATG5	rs9372120-G	0.2	7E-10				NR [> 9500000] (imputed)	N
1398	chr6	106667534	106667535	rs9372120	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6q21	NR	rs9372120-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
1398	chr6	106667534	106667535	rs9372120	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma onset (childhood vs adult)	13,962 European ancestry childhood onset cases, 14,873 European ancestry adult onset cases	31,002 European ancestry childhood onset cases, 16,297 European ancestry adult onset cases	6q21	ATG5	rs9372120-G	0.205	3E-7		1.065	[1.04-1.09]	Affymetrix [9000000] (imputed)	N
1398	chr6	106667534	106667535	rs9372120	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	6q21	ATG5	rs9372120-?	NR	9E-21		1.088	[1.07-1.11]	Affymetrix [9000000] (imputed)	N
1398	chr6	106667534	106667535	rs9372120	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	6q21	ATG5	rs9372120-G	NR	1E-6		1.042	[1.03-1.06]	Affymetrix [9000000] (imputed)	N
1398	chr6	106667534	106667535	rs9372120	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	6q21	ATG5	rs9372120-T	NR	1E-7		0.108761	[0.048-0.169] unit decrease	Illumina [8380626] (imputed)	N
1398	chr6	106667534	106667535	rs9372120	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	6q21	ATG5	rs9372120-G	0.18	4E-11		1.042	[1.03-1.05]	Affymetrix, Illumina [8307659] (imputed)	N
1398	chr6	106667534	106667535	rs9372120	27363682	Mitchell JS	2016-07-01	Nat Commun	Genome-wide association study identifies multiple susceptibility loci for multiple myeloma.	Multiple myeloma	7,319 European ancestry cases, 234,385 European ancestry controls	2,547 European ancestry cases, 4,803 European ancestry controls	6q21	ATG5, PRDM1	rs9372120-G	0.218	9E-15		1.18	[NR]	Illumina [at least 7182761] (imputed)	N
1398	chr6	106667534	106667535	rs9372120	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	6q21	ATG5	rs9372120-G	0.2	4E-8	(EA)	1.1	[1.06-1.14]	Affymetrix, Illumina [up to 9739303] (imputed)	N
1398	chr6	106667534	106667535	rs9372120	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	6q21	ATG5	rs9372120-G	0.16	8E-10		1.11	[1.07-1.14]	Affymetrix, Illumina [up to 9739303] (imputed)	N
1398	chr6	106667993	106667994	rs2299864	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls	NA	6q21	ATG5	rs2299864-?	NR	6E-15		1.24	[1.17-1.30]	Illumina [at least 5000000] (imputed)	N
1398	chr6	106676469	106676470	rs62422878	33310728	Ha E	2020-12-11	Ann Rheum Dis	Large-scale meta-analysis across East Asian and European populations updated genetic architecture and variant-driven biology of rheumatoid arthritis, identifying 11 novel susceptibility loci.	Rheumatoid arthritis	14,361 European ancestry cases, 43,923 European ancestry controls, 8,267 East Asian ancestry cases, 244,741 East Asian ancestry controls	NA	6q21		rs62422878-T	NR	4E-9		1.11	[1.07-1.15]	NR [13810676] (imputed)	N
1398	chr6	106685194	106685195	rs3827644	23740937	Martin JE	2013-06-10	Hum Mol Genet	A systemic sclerosis and systemic lupus erythematosus pan-meta-GWAS reveals new shared susceptibility loci.	Systemic lupus erythematosus and Systemic sclerosis	up to 2,761 European ancestry systemic sclerosis cases, 769 European ancestry systemic lupus erythematosus cases, 7,381 European ancestry controls	up to 1,578 European ancestry systemic sclerosis cases, 1,727 European ancestry systemic lupus erythematosus cases, 6,893 European ancestry controls	6q21	ATG5	rs3827644-?		5E-7		1.15	[NR]	Illumina [NR]	N
1399	chr6	106698052	106698053	rs34843857	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	6q21		rs34843857-A	NR	6E-21		0.0274	[0.022-0.033] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
1399	chr6	106727214	106727215	rs3804333	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	6q21		rs3804333-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1399	chr6	106734039	106734040	rs633724	31672989	Lopez-Isac E	2019-10-31	Nat Commun	GWAS for systemic sclerosis identifies multiple risk loci and highlights fibrotic and vasculopathy pathways.	Systemic sclerosis	9,095 European ancestry cases, 17,584 European ancestry controls	NA	6q21	ATG5	rs633724-T	0.35	3E-9		1.13		Illumina [4723365]	N
1399	chr6	106734407	106734408	rs484621	25524916	Palmer ND	2014-12-18	Diabetes	Genetic Variants Associated With Quantitative Glucose Homeostasis Traits Translate to Type 2 Diabetes in Mexican Americans: The GUARDIAN (Genetics Underlying Diabetes in Hispanics) Consortium.	Glucose homeostasis traits	up to 4,176 Mexican American individuals	NA	6q21	ATG5	rs484621-?		4E-6	(M)	18.89	[10.62-27.16] unit increase	Illumina [693128]	N
1399	chr6	106814375	106814376	rs9398080	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	6q21	NR	rs9398080-?	NR	2E-6				Illumina [at least 7383741] (imputed)	N
1399	chr6	106815696	106815697	rs9386531	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin I concentration	12,730 European ancestry individuals	NA	6q21		rs9386531-?	NR	3E-6		0.23	[0.13-0.33] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1400	chr6	106829536	106829537	rs6568433	20834067	Yashin AI	2010-09-01	Aging (Albany NY)	Joint influence of small-effect genetic variants on human longevity.	Longevity	1,173 individuals	NA	6q21	AL109920.3	rs6568433-?	NR	1E-6	(less than or equal to)			NR [~ 550000]	N
1400	chr6	106841947	106841948	rs803522	30942860	Shin J	2019-04-03	J Clin Endocrinol Metab	Novel genetic locus of visceral fat and systemic inflammation.	Visceral fat	1589 French-Canadian ancestry individuals	NA	6q21	Intergenic	rs803522-T	NR	2E-8	(adjusted for total body fat)	0.155	[0.1-0.21] unit increase	Illumina [8511049] (imputed)	N
1400	chr6	106841947	106841948	rs803522	30942860	Shin J	2019-04-03	J Clin Endocrinol Metab	Novel genetic locus of visceral fat and systemic inflammation.	Visceral fat	1589 French-Canadian ancestry individuals	NA	6q21	Intergenic	rs803522-T	NR	2E-8	(adjusted for subcutaneous fat)	0.144	[0.094-0.194] unit increase	Illumina [8511049] (imputed)	N
1400	chr6	106841947	106841948	rs803522	30942860	Shin J	2019-04-03	J Clin Endocrinol Metab	Novel genetic locus of visceral fat and systemic inflammation.	Visceral fat	1589 French-Canadian ancestry individuals	NA	6q21	CRYBG1, ATG5	rs803522-?	NR	1E-9	(adjusted for subcutaneous fat)	0.152	[0.10-0.20] unit increase	Illumina [8511049] (imputed)	N
1400	chr6	106841947	106841948	rs803522	30942860	Shin J	2019-04-03	J Clin Endocrinol Metab	Novel genetic locus of visceral fat and systemic inflammation.	Visceral fat	1589 French-Canadian ancestry individuals	NA	6q21	ATG5, CRYBG1	rs803522-?	NR	4E-10	(adjusted for total body fat)	0.17	[0.12-0.22] unit increase	Illumina [8511049] (imputed)	N
1400	chr6	106899225	106899226	rs1417352	17903293	Benjamin EJ	2007-09-19	BMC Med Genet	Genome-wide association with select biomarker traits in the Framingham Heart Study.	Select biomarker traits	1,012 European ancestry individuals	NA	6q21	intergenic	rs1417352-?	NR	2E-6	(ANP6)			Affymetrix [70897]	N
1400	chr6	106925875	106925876	rs74371164	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris color (a* coordinate)	329 South Asian ancestry individuals		6q21	intergenic	rs74371164-T	0.0244391	2E-6		1.29098	[0.77-1.81] unit decrease	Illumina [640625] (imputed)	N
1400	chr6	106938767	106938768	rs6919829	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6q21	RTN4IP1	rs6919829-?	NR	3E-6	(lactate)	0.2229473	[0.13-0.32] unit increase	Affymetrix [at least 2500000] (imputed)	N
1400	chr6	106942393	106942394	rs9486370	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	6q21		rs9486370-C	0.519734	6E-13		0.01592412	[0.012-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1400	chr6	106942393	106942394	rs9486370	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	6q21	NR	rs9486370-G	0.480721	4E-12		0.013101	[0.0094-0.0168] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
1400	chr6	106942393	106942394	rs9486370	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	6q21		rs9486370-?	NR	1E-14				NR [~ 8900000] (imputed)	N
1401	chr6	106987369	106987370	rs783396	17434096	Matarin M	2007-05-06	Lancet Neurol	A genome-wide genotyping study in patients with ischaemic stroke: initial analysis and data release.	Stroke	249 European ancestry cases, 268 European ancestry controls	NA	6q21	AIM1	rs783396-?	0.90	9E-6		2.17	[1.47-3.13]	Illumina [408803]	N
1401	chr6	107073938	107073939	rs7773795	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Achromobacter abundance in stool	5,959 Finnish ancestry individuals	NA	6q21		rs7773795-C	0.0949739	4E-8		0.0340796	[0.022-0.046] unit increase	Illumina [7980478] (imputed)	N
1401	chr6	107084940	107084941	rs1419054	33841421	Li J	2021-03-25	Front Immunol	Variants at the MHC Region Associate With Susceptibility to <i>Clostridioides difficile</i> Infection: A Genome-Wide Association Study Using Comprehensive Electronic Health Records.	Clostridioides difficle infection in antibiotics-users	587 European ancestry cases, 3,166 European ancestry controls	NA	6q21	QRSL1	rs1419054-A	0.115	4E-6		0.59	[0.43-0.75]	Illumina [64973696] (imputed)	N
1402	chr6	107140865	107140866	rs3121446	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Daytime sleep phenotypes	874 European ancestry individuals	NA	6q21	RP1-60O19.2, QRSL1, RPL21P65, RTN4IP1	rs3121446-A	NR	8E-6	(daytime napping duration, weekdays)	0.08029	[0.045-0.115] unit increase	Affymetrix [7141204] (imputed)	N
1402	chr6	107155686	107155687	rs9398107	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD24 on IgD+ CD38+ B cell	3,655 Sardinian (founder/genetic isolate) ancestry individuals	NA	6q21		rs9398107-G	0.05502	1E-15		0.4386	[0.33-0.55] unit decrease	Illumina [18237787] (imputed)	N
1402	chr6	107159821	107159822	rs12206866	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD24 on transitional B cell	3,656 Sardinian (founder/genetic isolate) ancestry individuals	NA	6q21		rs12206866-T	0.05591	1E-16		0.4459	[0.34-0.55] unit decrease	Illumina [18238267] (imputed)	N
1402	chr6	107164075	107164076	rs9400058	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD24 on unswitched memory B cell	3,655 Sardinian (founder/genetic isolate) ancestry individuals	NA	6q21		rs9400058-G	0.06496	4E-41		0.6739	[0.58-0.77] unit decrease	Illumina [18237790] (imputed)	N
1402	chr6	107164075	107164076	rs9400058	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD24 on IgD- CD38- B cell	3,648 Sardinian (founder/genetic isolate) ancestry individuals	NA	6q21		rs9400058-G	0.06508	2E-25		0.5307	[0.43-0.63] unit decrease	Illumina [18233041] (imputed)	N
1402	chr6	107164075	107164076	rs9400058	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD24 on IgD+ CD38- B cell	3,638 Sardinian (founder/genetic isolate) ancestry individuals	NA	6q21		rs9400058-G	0.06512	3E-17		0.432	[0.33-0.53] unit decrease	Illumina [18229172] (imputed)	N
1402	chr6	107164075	107164076	rs9400058	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD24 on IgD+ CD24+ B cell	3,655 Sardinian (founder/genetic isolate) ancestry individuals	NA	6q21		rs9400058-G	0.06496	1E-49		0.7377	[0.64-0.83] unit decrease	Illumina [18237790] (imputed)	N
1402	chr6	107168476	107168477	rs72948545	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD24 on switched memory B cell	3,652 Sardinian (founder/genetic isolate) ancestry individuals	NA	6q21		rs72948545-G	0.05864	1E-40		0.7073	[0.6-0.81] unit decrease	Illumina [18237700] (imputed)	N
1402	chr6	107168476	107168477	rs72948545	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD24 on memory B cell	3,653 Sardinian (founder/genetic isolate) ancestry individuals	NA	6q21		rs72948545-G	0.05862	6E-45		0.7352	[0.63-0.84] unit decrease	Illumina [18237721] (imputed)	N
1402	chr6	107168476	107168477	rs72948545	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD24 on IgD- CD38dim B cell	3,649 Sardinian (founder/genetic isolate) ancestry individuals	NA	6q21		rs72948545-G	0.05869	3E-45		0.7439	[0.64-0.85] unit decrease	Illumina [18231767] (imputed)	N
1402	chr6	107168476	107168477	rs72948545	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD24 on CD24+ CD27+ B cell	3,654 Sardinian (founder/genetic isolate) ancestry individuals	NA	6q21		rs72948545-G	0.05847	2E-61		0.858	[0.76-0.96] unit decrease	Illumina [18237589] (imputed)	N
1402	chr6	107168606	107168606	rs78528781	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Rubella	12,000 European ancestry cases, 71,597 European ancestry controls	NA	6q21	NR	rs78528781-?	NR	9E-6		0.4013	[0.23-0.57] unit decrease	Illumina [at least 560000] (imputed)	N
1402	chr6	107168675	107168676	rs12529793	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	6q21	NR	rs12529793-T	NR	9E-10		0.0279	[0.019-0.037] unit increase	Affymetrix [9000000] (imputed)	N
1402	chr6	107169821	107169822	rs9373896	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	6q21	LOC100422737	rs9373896-A	0.1466	9E-9		0.0296	[0.019-0.04] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1402	chr6	107172978	107172979	rs7766720	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	6q21		rs7766720-C	NR	6E-13		0.021	[0.015-0.027] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
1402	chr6	107172978	107172979	rs7766720	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	6q21		rs7766720-C	NR	3E-13		0.0189	[0.014-0.024] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
1402	chr6	107172978	107172979	rs7766720	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	6q21		rs7766720-C	NR	2E-12		0.0216	[0.016-0.028] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
1402	chr6	107172978	107172979	rs7766720	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	6q21	NR	rs7766720-C	NR	7E-10		0.0275	[0.019-0.036] unit increase	Affymetrix [9000000] (imputed)	N
1402	chr6	107172978	107172979	rs7766720	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q21	NR	rs7766720-C	0.105609	7E-10				Affymetrix, Illumina [24332387] (imputed)	N
1402	chr6	107172978	107172979	rs7766720	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	6q21	NR	rs7766720-C	0.079938	6E-11		0.022286	[0.016-0.029] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1402	chr6	107172978	107172979	rs7766720	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	6q21	LOC100422737	rs7766720-T	0.8829	5E-7		0.0029	[0.0019-0.0039] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
1402	chr6	107172978	107172979	rs7766720	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	165,726 East Asian ancestry individuals	NA	6q21	LOC100422737	rs7766720-T	0.8231	7E-6		0.0043	[0.0023-0.0063] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
1402	chr6	107172978	107172979	rs7766720	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	6q21	LOC100422737	rs7766720-T	0.8573	3E-8		0.0064	[0.004-0.0088] unit decrease	Affymetrix, Illumina [8176554] (imputed)	N
1402	chr6	107172978	107172979	rs7766720	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	6q21	LINC02532	rs7766720-C	0.1424	4E-8		5.485	NR z score decrease	Illumina [26237160] (imputed)	N
1402	chr6	107172978	107172979	rs7766720	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	6q21		rs7766720-?	NR	8E-9				NR [~ 8900000] (imputed)	N
1402	chr6	107173803	107173804	rs6914291	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	150,266 East Asian ancestry individuals	NA	6q21		rs6914291-T	0.180271	7E-9		0.0215691	[0.014-0.029] unit increase	Illumina [13478778] (imputed)	N
1402	chr6	107176028	107176029	rs11153022	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	UBA1066 sp900317515 abundance in stool	5,959 Finnish ancestry individuals	NA	6q21		rs11153022-C	0.335402	3E-10		0.0307641	[0.021-0.04] unit decrease	Illumina [7980478] (imputed)	N
1402	chr6	107179830	107179831	rs75218770	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	6q21	NR	rs75218770-?	NR	4E-8				Illumina [7760689] (imputed)	N
1403	chr6	107256672	107256673	rs1358726	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Intake of sweets	21,447 European ancestry individuals	NA	6q21	RP1-60O19.1	rs1358726-T	0.15	2E-6		0.07	[0.05-0.09] handful of candies/day increase	Affymetrix [10353649] (imputed)	N
1403	chr6	107279934	107279935	rs140633572	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	6q21	C6orf203	rs140633572-A	NR	5E-7	(between families)	5.03	unit decrease	Affymetrix [up to 15107142] (imputed)	N
1404	chr6	107388503	107388504	rs3749872	26256467	Wojczynski MK	2015-07-03	Metabolism	Genome-wide association study of triglyceride response to a high-fat meal among participants of the NHLBI Genetics of Lipid Lowering Drugs and Diet Network (GOLDN).	Postprandial triglyceride response to high fat diet meal	872 European ancestry individuals	843 Old Order Amish individuals	6q21	BEND3	rs3749872-C	0.0451	4E-7	(Uptake slope)	0.5892	[0.36-0.82] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1404	chr6	107400427	107400428	rs1627804	29227965	Pilling LC	2017-12-01	Aging (Albany NY)	Human longevity: 25 genetic loci associated in 389,166 UK biobank participants.	Parental longevity (combined parental age at death)	208,118 British ancestry individuals	NA	6q21	BEND3	rs1627804-C	0.684	4E-8		0.0197	[0.013-0.027] unit increase	Affymetrix [11535925] (imputed)	N
1404	chr6	107400427	107400428	rs1627804	29227965	Pilling LC	2017-12-01	Aging (Albany NY)	Human longevity: 25 genetic loci associated in 389,166 UK biobank participants.	Parental longevity (both parents in top 10%)	7,182 cases, 79,767 controls	NA	6q21	NR	rs1627804-C	NR	5E-6				Affymetrix [11535925] (imputed)	N
1404	chr6	107420515	107420516	rs4946811	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	6q21		rs4946811-C	0.42	5E-9		5.84	z score increase	Affymetrix [9061022] (imputed)	N
1404	chr6	107420515	107420516	rs4946811	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	6q21		rs4946811-C	0.42	8E-10		6.14	z score increase	Affymetrix [9061022] (imputed)	N
1404	chr6	107420515	107420516	rs4946811	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	6q21	NR	rs4946811-C	0.3587	1E-8				NR [9056863] (imputed)	N
1404	chr6	107420515	107420516	rs4946811	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	6q21	NR	rs4946811-C	0.3587	4E-11				NR [9056863] (imputed)	N
1404	chr6	107422238	107422239	rs2783019	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	6q21	BEND3	rs2783019-C	0.335884	3E-10		0.01489731	[0.01-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1404	chr6	107422238	107422239	rs2783019	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6q21	BEND3	rs2783019-C	0.335872	5E-12		0.016359746	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1404	chr6	107425609	107425610	rs112704702	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota alpha diversity (Shannon index)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	6q21		rs112704702-A	NR	9E-6		4.4279237	z score increase	Affymetrix, Illumina [NR] (imputed)	N
1404	chr6	107427165	107427166	rs60519666	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6q21	BEND3	rs60519666-A	0.323636	1E-14		0.018010542	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1404	chr6	107427165	107427166	rs60519666	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	6q21	NR	rs60519666-G	0.6769	3E-12		0.0347	[0.025-0.044] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1404	chr6	107427948	107427949	rs6568465	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	6q21		rs6568465-G	NR	6E-10		0.0125	[0.0086-0.0164] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
1404	chr6	107427948	107427949	rs6568465	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	6q21		rs6568465-G	NR	3E-10		0.0128	[0.0089-0.0167] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
1404	chr6	107431687	107431688	rs4946812	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	6q21	BEND3	rs4946812-G	0.6743	8E-9		1.04	[1.03-1.05]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1404	chr6	107432156	107432157	rs35045014	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	6q21	COL3A1, COL5A2, WDR75	rs35045014-?		8E-10				NR [7428630] (imputed)	N
1404	chr6	107432156	107432157	rs35045014	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	6q21	BEND3	rs35045014-?		1E-10				NR [7428630] (imputed)	N
1404	chr6	107432156	107432157	rs35045014	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	6q21		rs35045014-?	NR	9E-13				NR [~ 8900000] (imputed)	N
1404	chr6	107432398	107432399	rs35590987	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	6q21	BEND3	rs35590987-A	NR	6E-9		0.0208626	[0.014-0.028] unit increase	Affymetrix [321788] (imputed)	N
1404	chr6	107433399	107433400	rs1665901	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q21	NR	rs1665901-T	0.346958	5E-11				Affymetrix, Illumina [24246363] (imputed)	N
1404	chr6	107435870	107435879	rs372411283	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	6q21	BEND3	rs372411283-T	0.391458	1E-15		0.018438948	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1404	chr6	107435870	107435879	rs372411283	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	6q21	BEND3	rs372411283-T	0.391436	3E-25		0.023839688	[0.019-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1404	chr6	107435870	107435879	rs372411283	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6q21	BEND3	rs372411283-T	0.391471	5E-26		0.024165012	[0.02-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1404	chr6	107437165	107437166	rs62427982	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	6q21		rs62427982-T	NR	3E-21		0.0212	[0.017-0.026] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
1404	chr6	107437165	107437166	rs62427982	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6q21		rs62427982-C	0.677	2E-14				Affymetrix [10369434] (imputed)	N
1404	chr6	107437165	107437166	rs62427982	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	6q21	BEND3	rs62427982-T	0.322979	3E-28		0.026073245	[0.021-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
1404	chr6	107437165	107437166	rs62427982	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	6q21	BEND3	rs62427982-C	0.677829	1E-9		0.0130026	[0.0088-0.0172] unit increase	Affymetrix [NR] (imputed)	N
1404	chr6	107441253	107441254	rs62427983	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	6q21	BEND3	rs62427983-C	0.3218	1E-11		0.02591695	[0.018-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1404	chr6	107441734	107441735	rs72935795	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	6q21		rs72935795-T	0.316069	3E-18		0.020898167	[0.016-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1404	chr6	107441734	107441735	rs72935795	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	6q21		rs72935795-T	0.316065	6E-11		0.0156298	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1404	chr6	107441734	107441735	rs72935795	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	6q21		rs72935795-T	0.31604	2E-9		0.01375629	[0.0093-0.0183] unit decrease	Affymetrix [93095623] (imputed)	N
1404	chr6	107441734	107441735	rs72935795	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	6q21	NR	rs72935795-T	0.31534	5E-13		0.01453	[0.011-0.018] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1404	chr6	107441734	107441735	rs72935795	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	6q21	NR	rs72935795-T	0.316762	4E-11		0.014127	[0.0099-0.0183] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
1404	chr6	107441752	107441753	rs11153046	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q21	NR	rs11153046-G	0.686332	3E-28				Affymetrix, Illumina [23467995] (imputed)	N
1404	chr6	107441752	107441753	rs11153046	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	6q21	NR	rs11153046-A	0.322707	7E-10		0.00511232	[0.0034-0.0069] unit increase	Affymetrix [16582909] (imputed)	N
1404	chr6	107441752	107441753	rs11153046	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	6q21	NR	rs11153046-A	0.322707	6E-10		0.00599731	[0.004-0.008] unit increase	Affymetrix [16582965] (imputed)	N
1404	chr6	107441752	107441753	rs11153046	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	6q21	intergenic	rs11153046-G	0.6814	5E-13		0.02790902	[0.02-0.035] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1404	chr6	107442276	107442277	rs9480737	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	6q21		rs9480737-G	0.321832	4E-24		0.023955371	[0.019-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
1404	chr6	107442276	107442277	rs9480737	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	6q21	NR	rs9480737-G	0.321131	3E-27		0.021684	[0.018-0.026] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1404	chr6	107442276	107442277	rs9480737	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	6q21	intergenic	rs9480737-G	0.3224	1E-9		0.02326425	[0.016-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1404	chr6	107442430	107442431	rs12208103	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	6q21		rs12208103-T	NR	8E-11		0.0145	[0.01-0.019] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
1404	chr6	107442430	107442431	rs12208103	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	6q21		rs12208103-T	NR	3E-34		0.0211	[0.018-0.024] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
1404	chr6	107442430	107442431	rs12208103	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	6q21		rs12208103-T	0.376119	4E-45		0.032373585	[0.028-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
1404	chr6	107442430	107442431	rs12208103	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6q21		rs12208103-T	0.376126	2E-39		0.030162565	[0.026-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
1404	chr6	107442430	107442431	rs12208103	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q21	NR	rs12208103-T	0.354812	3E-24				Affymetrix, Illumina [23472807] (imputed)	N
1404	chr6	107442430	107442431	rs12208103	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	6q21	NR	rs12208103-T	0.378614	3E-23		0.020416	[0.016-0.024] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1404	chr6	107442430	107442431	rs12208103	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q21	NR	rs12208103-T	0.354378	2E-50				Affymetrix, Illumina [19872809] (imputed)	N
1404	chr6	107442430	107442431	rs12208103	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	6q21	NR	rs12208103-T	0.378399	7E-50		0.030736	[0.027-0.035] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
1404	chr6	107444152	107444153	rs6568466	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6q21		rs6568466-T	0.45	2E-11				Affymetrix [10369434] (imputed)	N
1404	chr6	107444152	107444153	rs6568466	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	6q21		rs6568466-?	NR	1E-48				NR [~ 8900000] (imputed)	N
1404	chr6	107444152	107444153	rs6568466	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	6q21	intergenic	rs6568466-C	0.5471	2E-21		0.03472109	[0.028-0.042] unit increase	Affymetrix [~ 2500000] (imputed)	N
1404	chr6	107444152	107444153	rs6568466	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	6q21	intergenic	rs6568466-C	0.5471	6E-23		0.03587881	[0.029-0.043] unit increase	Affymetrix [~ 2500000] (imputed)	N
1404	chr6	107444152	107444153	rs6568466	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	6q21	intergenic	rs6568466-C	0.5471	2E-21		0.03461546	[0.027-0.042] unit increase	Affymetrix [~ 2500000] (imputed)	N
1404	chr6	107445265	107445266	rs7752666	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	6q21	NR	rs7752666-C	0.7047	2E-12		0.0305	[0.022-0.039] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1404	chr6	107446539	107446540	rs6902010	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	6q21	intergenic	rs6902010-G	0.5331	2E-17		0.03141677	[0.024-0.039] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1404	chr6	107446539	107446540	rs6902010	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	6q21	intergenic	rs6902010-G	0.5331	1E-17		0.03163848	[0.024-0.039] unit increase	Affymetrix [~ 2500000] (imputed)	N
1404	chr6	107473217	107473218	rs9372149	26087016	Pappa I	2015-06-18	Am J Med Genet B Neuropsychiatr Genet	A genome-wide approach to children's aggressive behavior: The EAGLE consortium.	Childhood and early adolescence aggressive behavior	18,988 European ancestry individuals	NA	6q21	PDSS2	rs9372149-A	0.32	1E-6				Affymetrix, Illumina [up to 3856236] (imputed)	N
1405	chr6	107483439	107483440	rs11961833	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	6q21		rs11961833-?	NR	2E-13				NR [~ 8900000] (imputed)	N
1405	chr6	107517158	107517159	rs11153056	28738859	de Jong K	2017-07-24	Respir Res	Genes and pathways underlying susceptibility to impaired lung function in the context of environmental tobacco smoke exposure.	Forced expiratory volume in 1 second (environmental tobacco smoke interaction)	10,817 European ancestry individuals	1,156 European ancestry individuals, 1,276 individuals	6q21	PDSS2	rs11153056-C	0.29	8E-6		67.0	[37.6-96.4] unit increase	Illumina [227981]	N
1405	chr6	107539444	107539445	rs1861419	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Alanine aminotransferase levels in excessive alcohol consumption	951 individuals	NA	6q21	NR	rs1861419-?	NR	2E-6		0.0254	[0.015-0.036] unit decrease	Illumina [~ 7800000] (imputed)	N
1405	chr6	107551280	107551281	rs7754744	27561104	Pirastu N	2016-08-25	Sci Rep	Non-additive genome-wide association scan reveals a new gene associated with habitual coffee consumption.	Coffee consumption	370 Carlantino (founder/genetic isolate) individuals, 843 Friuli Venezia Giulia (founder/genetic isolate) individuals	1,731 Erasmus Rucphen (founder/genetic isolate) individuals	6q21	Intergenic	rs7754744-?	NR	9E-9		0.082	[0.055-0.109] unit increase	Illumina [at least 3692733] (imputed)	N
1405	chr6	107553311	107553312	rs2216084	27561104	Pirastu N	2016-08-25	Sci Rep	Non-additive genome-wide association scan reveals a new gene associated with habitual coffee consumption.	Coffee consumption	370 Carlantino (founder/genetic isolate) individuals, 843 Friuli Venezia Giulia (founder/genetic isolate) individuals	1,731 Erasmus Rucphen (founder/genetic isolate) individuals	6q21	Intergenic	rs2216084-?	NR	9E-9		0.082	[0.055-0.109] unit increase	Illumina [at least 3692733] (imputed)	N
1405	chr6	107555017	107555018	rs6942255	27561104	Pirastu N	2016-08-25	Sci Rep	Non-additive genome-wide association scan reveals a new gene associated with habitual coffee consumption.	Coffee consumption	370 Carlantino (founder/genetic isolate) individuals, 843 Friuli Venezia Giulia (founder/genetic isolate) individuals	1,731 Erasmus Rucphen (founder/genetic isolate) individuals	6q21	Intergenic	rs6942255-?	NR	1E-8		0.082	[0.055-0.109] unit increase	Illumina [at least 3692733] (imputed)	N
1405	chr6	107562913	107562914	rs9386630	27561104	Pirastu N	2016-08-25	Sci Rep	Non-additive genome-wide association scan reveals a new gene associated with habitual coffee consumption.	Coffee consumption	370 Carlantino (founder/genetic isolate) individuals, 843 Friuli Venezia Giulia (founder/genetic isolate) individuals	1,731 Erasmus Rucphen (founder/genetic isolate) individuals	6q21	Intergenic	rs9386630-?	NR	1E-8		0.082	[0.055-0.109] unit increase	Illumina [at least 3692733] (imputed)	N
1405	chr6	107565059	107565060	rs7745311	27561104	Pirastu N	2016-08-25	Sci Rep	Non-additive genome-wide association scan reveals a new gene associated with habitual coffee consumption.	Coffee consumption	370 Carlantino (founder/genetic isolate) individuals, 843 Friuli Venezia Giulia (founder/genetic isolate) individuals	1,731 Erasmus Rucphen (founder/genetic isolate) individuals	6q21	Intergenic	rs7745311-?	NR	1E-8		0.081	[0.054-0.108] unit increase	Illumina [at least 3692733] (imputed)	N
1405	chr6	107577471	107577472	rs59490629	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (90 or 130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	6q21	PDSS2	rs59490629-?	NR	9E-7		0.16	[0.076-0.244] unit increase	Illumina [at least 13000000] (imputed)	N
1405	chr6	107594770	107594771	rs2110904	26631737	Teumer A	2015-12-02	Diabetes	Genome-wide Association Studies Identify Genetic Loci Associated With Albuminuria in Diabetes.	Microalbuminuria	up to 54,116 European ancestry cases	NA	6q21	PDSS2	rs2110904-T	0.65	9E-6		0.1	[0.057-0.143] unit increase	Affymetrix, Illumina [2191945] (imputed)	N
1405	chr6	107605589	107605590	rs56180050	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6q21	NR	rs56180050-T	0.201	7E-7	(IFNalpha_ABC_of_CD20p)			Illumina [5084123] (imputed)	N
1406	chr6	107649122	107649123	rs78394231	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	6q21	NR	rs78394231-?		1E-8		0.0208531	[0.014-0.028] unit decrease	Affymetrix [19400418] (imputed)	N
1406	chr6	107660645	107660646	rs2430457	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6q21	NR	rs2430457-G	0.00697800000000004	5E-6	(IGP31)	2.6041	[1.48-3.73] unit increase	Illumina [~ 2500000] (imputed)	N
1406	chr6	107672526	107672527	rs9486594	25514360	Hansel NN	2014-12-16	Am J Respir Cell Mol Biol	Genome-Wide Association Study Identification of Novel Loci Associated with Airway Responsiveness in Chronic Obstructive Pulmonary Disease.	Airway responsiveness in chronic obstructive pulmonary disease	Up to 4,108 European American cases	NA	6q21	PDSS2	rs9486594-T	0.0872	1E-6	(O'Connor Slope)	0.058	[NR] unit increase	Illumina [546355]	N
1406	chr6	107672526	107672527	rs9486594	25514360	Hansel NN	2014-12-16	Am J Respir Cell Mol Biol	Genome-Wide Association Study Identification of Novel Loci Associated with Airway Responsiveness in Chronic Obstructive Pulmonary Disease.	Airway responsiveness in chronic obstructive pulmonary disease	Up to 4,108 European American cases	NA	6q21	PDSS2	rs9486594-C	0.087	2E-6	(Continuous PC20)	0.065	[NR] unit increase	Illumina [546355]	N
1407	chr6	107763193	107763194	rs143909847	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6q21	NR	rs143909847-G	0.01045	3E-8	(FHL1)	0.007837	NR unit increase	Illumina [1671387] (imputed)	N
1407	chr6	107763193	107763194	rs143909847	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6q21	NR	rs143909847-G	0.01045	2E-8	(LBP)	0.03695	NR unit increase	Illumina [1671387] (imputed)	N
1407	chr6	107763193	107763194	rs143909847	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6q21	NR	rs143909847-G	0.01045	2E-10	(LPP)	0.008923	NR unit increase	Illumina [1671387] (imputed)	N
1407	chr6	107794472	107794473	rs7356941	25514360	Hansel NN	2014-12-16	Am J Respir Cell Mol Biol	Genome-Wide Association Study Identification of Novel Loci Associated with Airway Responsiveness in Chronic Obstructive Pulmonary Disease.	Airway responsiveness in chronic obstructive pulmonary disease	Up to 4,108 European American cases	NA	6q21	intergenic	rs7356941-G	0.088	1E-6	(O'Connor Slope)	0.057	[NR] unit increase	Illumina [546355]	N
1407	chr6	107794472	107794473	rs7356941	25514360	Hansel NN	2014-12-16	Am J Respir Cell Mol Biol	Genome-Wide Association Study Identification of Novel Loci Associated with Airway Responsiveness in Chronic Obstructive Pulmonary Disease.	Airway responsiveness in chronic obstructive pulmonary disease	Up to 4,108 European American cases	NA	6q21	intergenic	rs7356941-A	0.088	2E-6	(Continuous PC20)	0.063	[NR] unit increase	Illumina [546355]	N
1407	chr6	107813721	107813722	rs2127141	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	6q21		rs2127141-C	0.18	1E-12		7.11	z score increase	Affymetrix [9061022] (imputed)	N
1408	chr6	107891150	107891151	rs148200579	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6q21	NR	rs148200579-A	0.01394	6E-9	(RAB14)	0.02047	NR unit increase	Illumina [1671387] (imputed)	N
1408	chr6	107898131	107898132	rs9373952	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6q21	PDSS2	rs9373952-?	NR	4E-6	(kynurenine)	0.18658319	[0.11-0.27] unit increase	Affymetrix [at least 2500000] (imputed)	N
1408	chr6	107931982	107931983	rs72945659	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	6q21		rs72945659-?	NR	9E-14				NR [~ 8900000] (imputed)	N
1408	chr6	107958325	107958326	rs846955	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	6q21	SOBP	rs846955-?	NR	2E-8		0.016081575	[0.011-0.022] unit decrease	Illumina [27896057] (imputed)	N
1408	chr6	107959415	107959416	rs846956	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	6q21		rs846956-T	NR	4E-9		0.0089	[0.006-0.0118] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1408	chr6	107959415	107959416	rs846956	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	6q21		rs846956-T	0.543086	5E-9		0.0117318	[0.0078-0.0157] unit decrease	Illumina [13479295] (imputed)	N
1408	chr6	107962469	107962470	rs72945685	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	6q21	SOBP	rs72945685-C	0.890514	3E-16		0.0237645	[0.018-0.029] unit decrease	NR [13737936] (imputed)	N
1408	chr6	107962469	107962470	rs72945685	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6q21		rs72945685-?	NR	7E-18		0.0262775	[0.02-0.033] unit decrease	Affymetrix [20259828] (imputed)	N
1409	chr6	108010532	108010533	rs847012	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	6q21	Intergenic	rs847012-C	NR	3E-7	(within families)	5.096	unit increase	Affymetrix [up to 15107142] (imputed)	N
1409	chr6	108017670	108017671	rs12525668	23049088	Meng W	2012-10-09	Invest Ophthalmol Vis Sci	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		6q21	intergenic	rs12525668-?	0.07	8E-11			[NR]	Affymetrix, Illumina [152234]	N
1409	chr6	108029517	108029518	rs1728118	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6q21		rs1728118-A	0.7272	1E-8		0.0089	[0.0058-0.012] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1409	chr6	108039017	108039018	rs6941160	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6q21	SCML4	rs6941160-A	0.164291	2E-9		0.018055664	[0.012-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1409	chr6	108042379	108042380	rs74514008	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure	35,269 European ancestry cases, 63,451 European ancestry controls	NA	6q21	NR	rs74514008-G	0.85221	4E-7		1.0729614	[1.04-1.1]	Affymetrix [7791636] (imputed)	N
1409	chr6	108050221	108050222	rs4945787	31393916	Andaleon A	2019-08-08	PLoS One	Genetically regulated gene expression underlies lipid traits in Hispanic cohorts.	Total cholesterol levels	11,103 Hispanic or Latin American ancestry individuals	NA	6q21	NR	rs4945787-?	NR	6E-7		0.091	[0.056-0.126] unit decrease	Illumina [1770809] (imputed)	N
1409	chr6	108053363	108053364	rs12526696	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	6q21		rs12526696-A	NR	2E-33		0.0353	[0.03-0.041] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
1409	chr6	108053363	108053364	rs12526696	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	334,944 European ancestry, NR ancestry individuals	NA	6q21		rs12526696-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1409	chr6	108053363	108053364	rs12526696	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	6q21		rs12526696-G	0.839	3E-18				Affymetrix [10369434] (imputed)	N
1409	chr6	108053363	108053364	rs12526696	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	334,468 European ancestry, NR ancestry individuals	NA	6q21		rs12526696-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1409	chr6	108053363	108053364	rs12526696	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	6q21	SCML4	rs12526696-A	0.161201	3E-13		0.022189772	[0.016-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
1409	chr6	108053363	108053364	rs12526696	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	6q21	SCML4	rs12526696-A	0.161202	1E-24		0.03117186	[0.025-0.037] unit increase	Affymetrix [93095623] (imputed)	N
1409	chr6	108053363	108053364	rs12526696	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6q21	SCML4	rs12526696-A	0.161207	3E-32		0.036040466	[0.03-0.042] unit increase	Affymetrix [93095623] (imputed)	N
1409	chr6	108053363	108053364	rs12526696	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q21	NR	rs12526696-A	0.152407	4E-42				Affymetrix, Illumina [23472807] (imputed)	N
1409	chr6	108053363	108053364	rs12526696	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	6q21	NR	rs12526696-A	0.160592	6E-44		0.037387	[0.032-0.043] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1409	chr6	108053968	108053969	rs6568490	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	6q21	SCML4	rs6568490-T	0.1623	3E-9		0.02919773	[0.02-0.039] unit increase	Affymetrix [~ 2500000] (imputed)	N
1409	chr6	108079594	108079595	rs9373973	29109912	Rawofi L	2017-11-02	PeerJ	Genome-wide association study of pigmentary traits (skin and iris color) in individuals of East Asian ancestry.	Iris color (L* coordinate)	377 East Asian ancestry individuals	NA	6q21	SCML4	rs9373973-A	0.184795	7E-6		0.453617	[0.26-0.65] unit decrease	Illumina [at least 520076] (imputed)	N
1409	chr6	108090475	108090476	rs7775791	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6q21		rs7775791-T	0.4055	4E-8	(conditional-joint)	0.0078	[0.0051-0.0105] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1409	chr6	108095327	108095328	rs72933176	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6q21	NR	rs72933176-G	0.01394	2E-8	(AOC3)	0.01893	NR unit increase	Illumina [1671387] (imputed)	N
1409	chr6	108098848	108098849	rs9486689	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	6q21	Intergenic	rs9486689-T	0.4044	1E-9	(MTAG)	0.0102	[0.0069-0.0135] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1409	chr6	108098848	108098849	rs9486689	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6q21	Intergenic	rs9486689-T	0.404	6E-9	(MTAG)	0.0078	[0.0053-0.0103] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1409	chr6	108112219	108112220	rs112538772	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	6q21	SCML4	rs112538772-A	0.238738	4E-9		0.015445884	[0.01-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1409	chr6	108116681	108116682	rs9400146	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	6q21	NR	rs9400146-?	NR	2E-7				Affymetrix [NR]	N
1409	chr6	108125271	108125272	rs55853946	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	6q21	SCML4	rs55853946-G	0.6858	2E-10		0.02518895	[0.017-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
1409	chr6	108131297	108131298	rs11966931	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	6q21	SCML4	rs11966931-A	0.2384	4E-9		0.02490724	[0.017-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
1409	chr6	108133058	108133059	rs11968258	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	6q21	SCML4	rs11968258-A	0.237805	1E-10		0.016822841	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1410	chr6	108145800	108145801	rs9486729	29472232	Li Y	2018-02-22	Arterioscler Thromb Vasc Biol	Genome-Wide Association and Functional Studies Identify SCML4 and THSD7A as Novel Susceptibility Genes for Coronary Artery Disease.	Coronary artery disease	280 Han Chinese ancestry cases, 350 Han Chinese ancestry controls	9,764 Han Chinese ancestry cases, 11,434 Han Chinese ancestry controls	6q21	SCML4	rs9486729-G	0.056	4E-11		1.25	[1.17-1.34]	Affymetrix [314806] (imputed)	N
1410	chr6	108154943	108154944	rs78541469	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6q21	NR	rs78541469-T	0.01394	3E-9	(CTSS)	0.01266	NR unit increase	Illumina [1671387] (imputed)	N
1410	chr6	108206384	108206385	rs6906957	32080893	Divers J	2020-02-20	Clin Transplant	GWAS for time to failure of kidney transplants from African American deceased donors.	Graft survival time in renal transplantation (donor effect) x APOL1 genotype interaction	532 African American donors	250 African American donors	6q21	SEC63	rs6906957-?	NR	1E-9		1.48	NR unit increase	Illumina [> 13000000] (imputed)	N
1410	chr6	108263555	108263556	rs1004384282	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD24 on IgD+ CD24+ B cell	3,655 Sardinian (founder/genetic isolate) ancestry individuals	NA	6q21		rs1004384282-C	0.0294	5E-9		0.4303	[0.29-0.57] unit increase	Illumina [18237790] (imputed)	N
1411	chr6	108323758	108323759	rs17069122	20889312	Wang KS	2010-10-01	Schizophr Res	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	6q21	NR	rs17069122-?	NR	1E-6		2.3265	[NR]	Affymetrix [722112]	N
1411	chr6	108333899	108333900	rs9398156	30705256	Koshimizu H	2019-01-31	Transl Psychiatry	Genome-wide association study identifies a novel locus associated with psychological distress in the Japanese population.	Psychological distress	3,981 Japanese ancestry cases, 6,349 Japaneses ancestry controls	NA	6q21	NR	rs9398156-C	0.0293	4E-6		1.6686133	[1.45-1.88]	Illumina [8567708] (imputed)	N
1411	chr6	108370584	108370585	rs149798287	31376382	Yang C	2019-07-31	J Invest Dermatol	Exome-Wide Rare Loss-of-Function Variant Enrichment Study of 21,347 Han Chinese Individuals Identifies Four Susceptibility Genes for Psoriasis.	Psoriasis	10,668 Chinese ancestry cases, 10,679 Chinese ancestry controls	NA	6q21	OSTM1	rs149798287-?		1E-8		0.369		NR [66000]	N
1412	chr6	108402741	108402742	rs9384672	32185793	Yan J	2020-03-17	Clin Genet	A genome-wide association study identifies FSHR rs2300441 associated with follicle-stimulating hormone levels.	Follicle stimulating hormone in healthy women	708 Han Chinese ancestry individuals	NA	6q21	NR	rs9384672-C	0.339	6E-6		0.4802	NR unit increase	Affymetrix [3101376] (imputed)	N
1412	chr6	108467023	108467024	rs218291	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	6q21	NR	rs218291-A	NR	8E-10		0.0154	[0.011-0.02] unit decrease	Affymetrix [9000000] (imputed)	N
1412	chr6	108473445	108473446	rs117812342	30306274	Shah RL	2018-10-10	Hum Genet	Genome-wide association studies for corneal and refractive astigmatism in UK Biobank demonstrate a shared role for myopia susceptibility loci.	Refractive astigmatism	88,005 European ancestry individuals		6q21	OSTM1-AS1	rs117812342-A	0.976	9E-6		0.042	[0.024-0.06] dioptres decrease	NR [5900115] (imputed)	N
1412	chr6	108490009	108490010	rs2235997	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	6q21	NR	rs2235997-A	0.498	4E-9		0.00785877	[0.0052-0.0105] unit decrease	NR [~ 9732723] (imputed)	N
1412	chr6	108499724	108499725	rs217526	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	6q21	NR	rs217526-?	NR	6E-6		0.0078978	[0.0045-0.0113] unit increase	Affymetrix [805426] (imputed)	N
1414	chr6	108690155	108690156	rs1537862	33736632	Zeng Z	2021-03-18	BMC Med Genomics	Genome-wide association study identifies new loci associated with risk of HBV infection and disease progression.	Hepatitis B	460 Chinese ancestry cases, 169 Chinese ancestry controls	NA	6q21	LACE1	rs1537862-?	NR	2E-6				Affymetrix [607153]	N
1414	chr6	108762205	108762206	rs117914390	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	6q21	NR	rs117914390-?	NR	4E-6	(Native Hawaiian)	1.2612	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1414	chr6	108774943	108774944	rs80053007	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	6q21	NR	rs80053007-T	NR	2E-13		0.0323	[0.024-0.041] unit decrease	Affymetrix [9000000] (imputed)	N
1414	chr6	108774943	108774944	rs80053007	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	6q21	NR	rs80053007-T	NR	4E-17		0.0352	[0.027-0.043] unit decrease	Affymetrix [9000000] (imputed)	N
1415	chr6	108790034	108790035	rs80352736	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6q21		rs80352736-?	NR	7E-10				NR [~ 8900000] (imputed)	N
1415	chr6	108810564	108810565	rs61598054	28369058	Folkersen L	2017-04-03	PLoS Genet	Mapping of 79 loci for 83 plasma protein biomarkers in cardiovascular disease.	Blood protein levels in cardiovascular risk	3,394 European ancestry individuals	2,639 individuals	6q21	FOXO3	rs61598054-C	0.87	4E-8		0.31	unit decrease	Illumina [5270624] (imputed)	N
1415	chr6	108853492	108853493	rs17041	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6q21	LACE1	rs17041-A	0.473	6E-6	(ALT )	0.03	[NR] U/L increase	Illumina [899892]	N
1415	chr6	108856377	108856378	rs6568547	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	6q21	NR	rs6568547-T	NR	3E-9		5.956	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1415	chr6	108856377	108856378	rs6568547	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6q21	LACE1	rs6568547-T	NR	1E-8		5.664	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1415	chr6	108856377	108856378	rs6568547	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	6q21	LACE1	rs6568547-T	NR	2E-8		0.02077229	[0.014-0.028] unit decrease	Affymetrix [NR]	N
1415	chr6	108857875	108857876	rs2018420	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	6q21	NR	rs2018420-?	NR	8E-9	(right ventral DC)			NR [9227495] (imputed)	N
1415	chr6	108857875	108857876	rs2018420	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	6q21	NR	rs2018420-?	NR	4E-8	(Brain stem)			NR [9227495] (imputed)	N
1415	chr6	108858459	108858460	rs9480861	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6q21	LACE1	rs9480861-T	NR	6E-10		6.183	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1415	chr6	108858459	108858460	rs9480861	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	6q21	LACE1	rs9480861-T	NR	2E-10		0.019309636	[0.013-0.025] unit decrease	Affymetrix [NR]	N
1415	chr6	108861263	108861264	rs1575676	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	6q21		rs1575676-T	NR	2E-36		0.0221	[0.019-0.025] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1415	chr6	108861263	108861264	rs1575676	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	6q21	ENSG00000271608	rs1575676-?	NR	2E-10		0.011183	[0.0077-0.0146] unit increase	Affymetrix [805426] (imputed)	N
1415	chr6	108864418	108864419	rs9384679	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	6q21	NR	rs9384679-C	0.4334	4E-21		0.060246147	[0.048-0.073] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1415	chr6	108864418	108864419	rs9384679	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Verbal-numerical reasoning	171,304 British ancestry individuals	NA	6q21		rs9384679-?	NR	6E-15				NR [7857346] (imputed)	N
1415	chr6	108864418	108864419	rs9384679	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Cognitive traits (MTAG)	331,679 British ancestry individuals	NA	6q21		rs9384679-?	NR	2E-9				NR [7857346] (imputed)	N
1415	chr6	108864418	108864419	rs9384679	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	6q21	Intergenic	rs9384679-T	0.3717	2E-27	(MTAG)	0.0257	[0.021-0.03] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1415	chr6	108864418	108864419	rs9384679	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	6q21	Intergenic	rs9384679-T	0.3717	1E-21		0.0282	[0.022-0.034] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
1415	chr6	108864418	108864419	rs9384679	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	6q21	NR	rs9384679-T	NR	8E-22		9.601	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1415	chr6	108864418	108864419	rs9384679	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6q21	ENSG00000271608	rs9384679-T	NR	2E-14		7.629	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1415	chr6	108864418	108864419	rs9384679	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	6q21	ENSG00000271608	rs9384679-T	NR	2E-19		0.027108531	[0.021-0.033] unit decrease	Affymetrix [NR]	N
1415	chr6	108864418	108864419	rs9384679	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability (MTAG)	436,124 European ancestry individuals	NA	6q21	ENSG00000271608	rs9384679-?	NR	6E-15		7.795	z score decrease	Affymetrix, Illumina, Perlegen [7333576] (imputed)	N
1415	chr6	108864418	108864419	rs9384679	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability	107,207 European ancestry individuals	NA	6q21	ENSG00000271608	rs9384679-?	NR	7E-16		8.068	z score decrease	Affymetrix, Illumina [7357080] (imputed)	N
1415	chr6	108865662	108865663	rs6927268	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6q21	NR	rs6927268-?	NR	6E-13				Affymetrix [~ 8270000] (imputed)	N
1415	chr6	108865662	108865663	rs6927268	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	6q21	NR	rs6927268-T	NR	6E-9		5.811	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1415	chr6	108865662	108865663	rs6927268	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	6q21	ENSG00000271608	rs6927268-T	NR	8E-10		0.022016313	[0.015-0.029] unit increase	Affymetrix [NR]	N
1415	chr6	108867030	108867031	rs6911407	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Longevity	up to 482,000 European ancestry individuals	NA	6q21	NR	rs6911407-A	NR	6E-6		0.009596	[0.0055-0.0137] unit increase	Illumina [~ 540852]	N
1415	chr6	108876001	108876002	rs768023	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	6q21		rs768023-A	NR	1E-8		0.0113	[0.0074-0.0152] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
1415	chr6	108876001	108876002	rs768023	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	6q21	FOXO3	rs768023-?		2E-10				NR [7428630] (imputed)	N
1415	chr6	108876001	108876002	rs768023	29520040	Coleman JRI	2018-03-08	Mol Psychiatry	Biological annotation of genetic loci associated with intelligence in a meta-analysis of 87,740 individuals.	Extremely high intelligence	1,247 European ancestry cases, 86,493 European ancestry controls	NA	6q21	FOXO3	rs768023-A	0.564	6E-13		7.2	NR z score increase increase	Illumina [up to 12595966] (imputed)	N
1415	chr6	108876001	108876002	rs768023	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability	107,207 European ancestry individuals	NA	6q21	ENSG00000271608	rs768023-?	NR	5E-16		8.102	z score increase	Affymetrix, Illumina [7357080] (imputed)	N
1415	chr6	108877653	108877653	rs11398842	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	6q21	FOXO3	rs11398842-GT	0.31756	3E-12		0.017030638	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1415	chr6	108877653	108877653	rs11398842	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6q21	FOXO3	rs11398842-GT	0.317468	6E-18		0.020845458	[0.016-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1415	chr6	108885622	108885623	rs1536057	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	6q21	FOXO3	rs1536057-T	0.2781	4E-9		0.0236215	[0.016-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
1415	chr6	108888592	108888593	rs2253310	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		6q21	FOXO3	rs2253310-C	0.373748	9E-14		0.0105591	[0.0078-0.0133] unit decrease	Affymetrix [12370749]	N
1415	chr6	108888592	108888593	rs2253310	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	6q21	NR	rs2253310-C	0.3714	3E-16		0.020934206	[0.016-0.026] unit decrease	Affymetrix [10549349] (imputed)	N
1415	chr6	108888592	108888593	rs2253310	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	6q21		rs2253310-?	NR	8E-20				NR [~ 8900000] (imputed)	N
1415	chr6	108894437	108894438	rs2764265	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6q21	Intergenic	rs2764265-T	0.6156	3E-13	(MTAG)	0.0098	[0.0073-0.0123] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1415	chr6	108895385	108895386	rs2490272	28530673	Sniekers S	2017-05-22	Nat Genet	Genome-wide association meta-analysis of 78,308 individuals identifies new loci and genes influencing human intelligence.	Intelligence	up to 58,799 European ancestry adults, up to 19,509 European ancestry children	NA	6q21	FOXO3, LACE1	rs2490272-T	0.6308	2E-12	(Adults)	7.063	z score increase	Affymetrix, Illumina [12104294] (imputed)	N
1415	chr6	108895385	108895386	rs2490272	28530673	Sniekers S	2017-05-22	Nat Genet	Genome-wide association meta-analysis of 78,308 individuals identifies new loci and genes influencing human intelligence.	Intelligence	up to 58,799 European ancestry adults, up to 19,509 European ancestry children	NA	6q21	FOXO3, LACE1	rs2490272-T	0.6308	1E-13		7.441	z score increase	Affymetrix, Illumina [12104294] (imputed)	N
1415	chr6	108896214	108896215	rs2802288	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	6q21		rs2802288-?	NR	1E-7				NR [~ 8900000] (imputed)	N
1415	chr6	108905679	108905680	rs2802290	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	6q21	NR	rs2802290-G	0.375	2E-15				NR [9056863] (imputed)	N
1415	chr6	108906199	108906200	rs12206094	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6q21	NR	rs12206094-?	NR	1E-12				Affymetrix [~ 8270000] (imputed)	N
1415	chr6	108906199	108906200	rs12206094	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	6q21	NA	rs12206094-T	0.2888	2E-10		0.0119	[0.0082-0.0156] unit decrease	NR [~ 27400000] (imputed)	N
1415	chr6	108906199	108906200	rs12206094	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	6q21	NA	rs12206094-T	0.2896	2E-15		0.0143	[0.011-0.018] unit decrease	NR [~ 27400000] (imputed)	N
1415	chr6	108908517	108908518	rs2802292	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	6q21	FOXO3	rs2802292-T	0.62647	2E-21		0.022173798	[0.018-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1415	chr6	108916572	108916573	rs9480865	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	6q21		rs9480865-?	NR	6E-14				NR [~ 8900000] (imputed)	N
1415	chr6	108916572	108916573	rs9480865	19010793	Baranzini SE	2008-11-14	Hum Mol Genet	Genome-wide association analysis of susceptibility and clinical phenotype in multiple sclerosis.	Normalized brain volume	753 European ancestry cases, 883 European ancestry controls	NA	6q21	FOXO3	rs9480865-?	0.16	7E-6			[NR]	Illumina [551642]	N
1416	chr6	108926495	108926496	rs2802295	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	6q21		rs2802295-G	NR	5E-18		0.0175	[0.014-0.021] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1416	chr6	108926495	108926496	rs2802295	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	6q21	NR	rs2802295-A	0.3852	3E-14	(total)	616.77	[458.04-775.5] unit decrease	Affymetrix, Illumina [NR]	N
1416	chr6	108927841	108927842	rs2764261	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	6q21		rs2764261-?	NR	5E-13				NR [~ 8900000] (imputed)	N
1416	chr6	108927841	108927842	rs2764261	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	6q21	Intergenic	rs2764261-A	0.3799	1E-25	(MTAG)	0.0193	[0.016-0.023] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1416	chr6	108927841	108927842	rs2764261	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	6q21	Intergenic	rs2764261-A	0.3799	9E-19		0.0178	[0.014-0.022] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1416	chr6	108927841	108927842	rs2764261	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	6q21	Intergenic	rs2764261-A	0.379	7E-21	(MTAG)	0.0159	[0.013-0.019] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1416	chr6	108927841	108927842	rs2764261	29899525	Klimentidis YC	2018-06-13	Int J Obes (Lond)	Genome-wide association study of habitual physical activity in over 377,000 UK Biobank participants identifies multiple variants including CADM2 and APOE.	Vigorous physical activity	98,060 European ancestry active cases, 162,995 European ancestry inactive controls	NA	6q21	FOXO3	rs2764261-A	0.37	9E-11	(model 2)	1.04		Affymetrix [11800000] (imputed)	N
1416	chr6	108927841	108927842	rs2764261	29899525	Klimentidis YC	2018-06-13	Int J Obes (Lond)	Genome-wide association study of habitual physical activity in over 377,000 UK Biobank participants identifies multiple variants including CADM2 and APOE.	Vigorous physical activity	98,060 European ancestry active cases, 162,995 European ancestry inactive controls	NA	6q21	FOXO3	rs2764261-A	0.37	2E-11		1.04		Affymetrix [11800000] (imputed)	N
1416	chr6	108928170	108928171	rs7754626	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	6q21	FOXO3	rs7754626-A	0.161081	4E-17		0.025473922	[0.02-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
1416	chr6	108928170	108928171	rs7754626	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6q21	FOXO3	rs7754626-A	0.161099	3E-14		0.022996154	[0.017-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
1416	chr6	108928170	108928171	rs7754626	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	6q21	FOXO3	rs7754626-A	0.161045	2E-20		0.027862303	[0.022-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
1416	chr6	108934460	108934461	rs2764264	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	6q21		rs2764264-C	0.37	2E-22		9.73	z score increase	Affymetrix [9061022] (imputed)	N
1416	chr6	108934460	108934461	rs2764264	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	6q21	NR	rs2764264-?	NR	5E-13	(total brain volume)			NR [9227495] (imputed)	N
1416	chr6	108935914	108935915	rs4317448	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	6q21	NR	rs4317448-?	NR	2E-8	(left ventral DC)			NR [9227495] (imputed)	N
1416	chr6	108935914	108935915	rs4317448	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	6q21		rs4317448-?	NR	3E-10				NR [~ 8900000] (imputed)	N
1416	chr6	108944164	108944165	rs3813498	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	6q21	FOXO3	rs3813498-T	0.8126	6E-29		0.027	[0.022-0.032] unit increase	Affymetrix [18391927] (imputed)	N
1416	chr6	108944164	108944165	rs3813498	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	6q21	NR	rs3813498-?	NR	5E-11	(right ventral DC)			NR [9227495] (imputed)	N
1416	chr6	108944164	108944165	rs3813498	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6q21		rs3813498-?	NR	3E-44				NR [~ 8900000] (imputed)	N
1416	chr6	108944164	108944165	rs3813498	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	6q21	NR	rs3813498-T	NR	1E-12		7.107	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1416	chr6	108945369	108945370	rs2022464	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	6q21		rs2022464-A	0.36	3E-27		10.83	z score increase	Affymetrix [9061022] (imputed)	N
1416	chr6	108945369	108945370	rs2022464	30818988	Klein M	2019-03-01	Am J Psychiatry	Genetic Markers of ADHD-Related Variations in Intracranial Volume.	Intracranial volume	24,024 European ancestry individuals	NA	6q21	NR	rs2022464-A	NR	1E-10		6.418	NR z score decrease	NR [9186920] (imputed)	N
1416	chr6	108945369	108945370	rs2022464	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	6q21	FOXO3	rs2022464-A	NR	8E-15		0.024555275	[0.018-0.031] unit decrease	Affymetrix [NR]	N
1416	chr6	108951654	108951655	rs9285397	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	6q21		rs9285397-C	NR	2E-22		0.0228	[0.018-0.027] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
1416	chr6	108951654	108951655	rs9285397	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	6q21	FOXO3	rs9285397-T	NR	6E-9		0.022795549	[0.015-0.03] unit increase	Affymetrix [NR]	N
1416	chr6	108953974	108953975	rs13207511	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	6q21	NR	rs13207511-G	NR	1E-14		0.0215	[0.016-0.027] unit increase	Affymetrix [9000000] (imputed)	N
1416	chr6	108960839	108960840	rs9486913	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	6q21	FOXO3	rs9486913-G	0.1564	3E-10		0.03106927	[0.021-0.041] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1416	chr6	108962641	108962642	rs9480866	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	6q21	FOXO3	rs9480866-T	0.1565	2E-9		0.02957763	[0.02-0.039] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1416	chr6	108962641	108962642	rs9480866	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	6q21	FOXO3	rs9480866-T	0.1565	1E-11		0.03354746	[0.024-0.043] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1416	chr6	108977662	108977663	rs9400239	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	6q21	NR	rs9400239-T	NR	5E-14		0.02	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
1416	chr6	108977662	108977663	rs9400239	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	6q21	FOXO3	rs9400239-T	0.3467	2E-6		0.0163	[0.0096-0.023] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1416	chr6	108977662	108977663	rs9400239	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	6q21	NR	rs9400239-T	0.307456911187995	5E-9		0.017088454	unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1416	chr6	108977662	108977663	rs9400239	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	6q21	FOXO3	rs9400239-C	0.69	1E-7	(EA, women)	0.023	[0.014-0.031] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1416	chr6	108977662	108977663	rs9400239	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	6q21	FOXO3	rs9400239-C	0.688	2E-8	(EA)	0.019	[0.012-0.025] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1416	chr6	108977662	108977663	rs9400239	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	6q21	FOXO3	rs9400239-C	0.673	7E-8		0.017	[0.011-0.024] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1416	chr6	108977662	108977663	rs9400239	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6q21	FOXO3	rs9400239-T	0.3145	6E-8	(EA, women)	0.0255	[0.016-0.035] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1416	chr6	108977662	108977663	rs9400239	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6q21	FOXO3	rs9400239-T	0.3145	3E-6	(EA, men)	0.0235	[0.014-0.033] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1416	chr6	108977662	108977663	rs9400239	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6q21	FOXO3	rs9400239-T	0.3145	2E-11	(EA)	0.0244	[0.017-0.031] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1416	chr6	108979305	108979306	rs77061140	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	6q21	NR	rs77061140-T	NR	2E-14		0.032	[0.024-0.04] unit decrease	Affymetrix [9000000] (imputed)	N
1416	chr6	108979305	108979306	rs77061140	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	6q21	NR	rs77061140-T	NR	6E-28		0.044	[0.036-0.052] unit decrease	Affymetrix [9000000] (imputed)	N
1416	chr6	108979305	108979306	rs77061140	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	6q21	NR	rs77061140-T	NR	1E-10		0.0257	[0.018-0.034] unit increase	Affymetrix [9000000] (imputed)	N
1416	chr6	108979305	108979306	rs77061140	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	6q21	NR	rs77061140-T	NR	3E-11		0.0266	[0.019-0.034] unit decrease	Affymetrix [9000000] (imputed)	N
1416	chr6	108983526	108983527	rs9398171	33979322	Currant H	2021-05-12	PLoS Genet	Genetic variation affects morphological retinal phenotypes extracted from UK Biobank optical coherence tomography images.	Retinal nerve fibre layer thickness or ganglion cell inner plexiform layer thickness (MTAG)	31,434 European ancestry individuals	NA	6q21	NR	rs9398171-T	0.71	8E-22		0.5	[0.4-0.6] unit increase	Affymetrix [9231066] (imputed)	N
1416	chr6	108983526	108983527	rs9398171	33979322	Currant H	2021-05-12	PLoS Genet	Genetic variation affects morphological retinal phenotypes extracted from UK Biobank optical coherence tomography images.	Retinal nerve fibre layer (RNFL) thickness	31,434 European ancestry individuals	NA	6q21	NR	rs9398171-T	0.71	1E-8		0.23	[0.15-0.31] unit increase	Affymetrix [9231066] (imputed)	N
1416	chr6	108983526	108983527	rs9398171	33979322	Currant H	2021-05-12	PLoS Genet	Genetic variation affects morphological retinal phenotypes extracted from UK Biobank optical coherence tomography images.	Ganglion cell inner plexiform layer (GCIPL) thickness	31,434 European ancestry individuals	NA	6q21	NR	rs9398171-T	0.71	8E-22		0.5	[0.4-0.6] unit increase	Affymetrix [9231066] (imputed)	N
1416	chr6	108983526	108983527	rs9398171	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	6q21	ANKRD44, SF3B1, COQ10B, HSPD1, HSPE1, HSPE1-MOB4, MOB4, RFTN2, AC011997.1, MARS2, BOLL, PLCL1	rs9398171-?		1E-11				NR [7428630] (imputed)	N
1416	chr6	108983526	108983527	rs9398171	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	6q21	NR	rs9398171-?	NR	3E-8	(male)	0.21275	[0.14-0.29] unit increase	Affymetrix [7794483] (imputed)	N
1416	chr6	108983526	108983527	rs9398171	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	6q21	NR	rs9398171-?	NR	2E-7	(female)	0.13775	[0.086-0.19] unit increase	Affymetrix [7794483] (imputed)	N
1416	chr6	108983526	108983527	rs9398171	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	6q21	NR	rs9398171-?	NR	1E-13		0.18018	[0.13-0.23] unit increase	Affymetrix [7794483] (imputed)	N
1416	chr6	108983526	108983527	rs9398171	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	6q21	FOXO3	rs9398171-?	NR	6E-22		0.704	[0.56-0.85] unit decrease	Affymetrix [11100000] (imputed)	N
1416	chr6	108983526	108983527	rs9398171	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	6q21	FOXO3	rs9398171-C	NR	3E-7	(EA)	1.0631511	[1.04-1.09]	Illumina [6627481] (imputed)	N
1416	chr6	108983526	108983527	rs9398171	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	6q21	FOXO3	rs9398171-C	NR	2E-11		1.0695187	[1.05-1.09]	Illumina [6627481] (imputed)	N
1416	chr6	108983526	108983527	rs9398171	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	6q21	FOXO3, ZNF259P1	rs9398171-C	NR	2E-11		1.0695187	[1.05-1.09]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1416	chr6	108983526	108983527	rs9398171	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	6q21	NR	rs9398171-C	NR	4E-8		1.0638298	[NR]	Illumina [7158791] (imputed)	N
1416	chr6	108987227	108987227	rs147856773	28067912	Lee JC	2017-01-09	Nat Genet	Genome-wide association study identifies distinct genetic contributions to prognosis and susceptibility in Crohn's disease.	Poor prognosis in Crohn's disease	1,762 Northern European ancestry poor prognosis cases, 972 Northern European ancestry good prognosis controls.		6q21	FOXO3	rs147856773-?	NR	1E-8		1.75	[1.43-2.13]	Affymetrix, Illumina [at least 7000000] (imputed)	N
1416	chr6	108988183	108988184	rs2153960	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	6q21		rs2153960-G	0.36	3E-16		8.18	z score increase	Affymetrix [9061022] (imputed)	N
1416	chr6	108988183	108988184	rs2153960	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	6q21	NR	rs2153960-G	0.2912	3E-13				NR [9056863] (imputed)	N
1416	chr6	108988183	108988184	rs2153960	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	6q21		rs2153960-A	0.7083	2E-11		0.2037159	[0.15-0.26] mmHg decrease	Affymetrix, Illumina [242865] (imputed)	N
1416	chr6	108988183	108988184	rs2153960	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	6q21		rs2153960-A	0.7084	2E-9		0.12330746	[0.084-0.162] mmHg decrease	Affymetrix, Illumina [242866] (imputed)	N
1416	chr6	108988183	108988184	rs2153960	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (min-P)	26,502 European ancestry individuals	NA	6q21	POGK, TADA1, ILDR2, MAEL	rs2153960-?		8E-12				NR [7428630] (imputed)	N
1416	chr6	108988183	108988184	rs2153960	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (min-P)	26,502 European ancestry individuals	NA	6q21	VIT, AC007382.1, STRN, HEATR5B	rs2153960-?		2E-11				NR [7428630] (imputed)	N
1416	chr6	108988183	108988184	rs2153960	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	6q21	NR	rs2153960-?	NR	1E-12		1.0680109	[1.05-1.09]	Affymetrix, Illumina [12447948] (imputed)	N
1416	chr6	108988183	108988184	rs2153960	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	6q21	NR	rs2153960-?	NR	1E-11	(right ventral DC)			NR [9227495] (imputed)	N
1416	chr6	108988183	108988184	rs2153960	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	6q21	NR	rs2153960-?	NR	1E-11	(left ventral DC)			NR [9227495] (imputed)	N
1416	chr6	108988183	108988184	rs2153960	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	6q21	NR	rs2153960-?	NR	1E-11	(Brain stem)			NR [9227495] (imputed)	N
1416	chr6	108988183	108988184	rs2153960	21216879	Kaplan RC	2011-01-07	Hum Mol Genet	A genome-wide association study identifies novel loci associated with circulating IGF-I and IGFBP-3.	Insulin-like growth factors	10,280 European ancestry individuals	NA	6q21	FOXO3	rs2153960-A	0.69	5E-7	(IGF-I)			Affymetrix, Illumina [~ 2500000] (imputed)	N
1416	chr6	108994160	108994161	rs3800227	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	Anxiety/tension (special factor of neuroticism)	270,059 British ancestry individuals	NA	6q21	FOXO3	rs3800227-A	NR	2E-8		0.0087457	[0.0057-0.0118] unit decrease	Affymetrix [18485882] (imputed)	N
1416	chr6	108994160	108994161	rs3800227	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	6q21	FOXO3	rs3800227-A	0.2588	5E-9		0.013393484	[0.0089-0.0179] unit decrease	Affymetrix [11514654] (imputed)	N
1416	chr6	108994160	108994161	rs3800227	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	6q21	NR	rs3800227-G	0.742	9E-12		0.00841442	[0.006-0.0108] unit increase	NR [9732723] (imputed)	N
1416	chr6	108994160	108994161	rs3800227	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	6q21	NR	rs3800227-G	0.742	4E-9		0.017177952	[0.011-0.023] unit increase	NR [~ 10000000] (imputed)	N
1416	chr6	108994160	108994161	rs3800227	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	6q21	FOXO3	rs3800227-A	0.2686	5E-6		0.0331	[0.019-0.047] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1416	chr6	108994432	108994433	rs35396874	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	163,835 East Asian ancestry individuals	NA	6q21		rs35396874-T	0.768564	7E-9		0.0218775	[0.014-0.029] unit increase	Illumina [13479178] (imputed)	N
1416	chr6	108995186	108995187	rs61192764	34006833	Elvsashagen T	2021-05-18	Nat Commun	The genetic architecture of the human thalamus and its overlap with ten common brain disorders.	Thalamus volume	30,114 white British ancestry individuals			FOXO3	rs61192764-G	0.1195	5E-10		43.5353	[29.84-57.23] unit decrease	Affymetrix [8165723] (imputed)	N
1416	chr6	108996747	108996748	rs3800228	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Reaction time	330,024 British ancestry individuals	NA	6q21		rs3800228-?	NR	1E-11				NR [7857346] (imputed)	N
1416	chr6	108996962	108996963	rs3800229	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	6q21	FOXO3	rs3800229-T	0.68	4E-13		0.019	[0.013-0.025] unit increase	Illumina [6108953] (imputed)	N
1416	chr6	108996962	108996963	rs3800229	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6q21	FOXO3	rs3800229-T	0.6703	7E-7		0.0212	[0.013-0.03] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1416	chr6	108996962	108996963	rs3800229	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6q21	FOXO3	rs3800229-T	0.6641	2E-6	(women)	0.0257	[0.015-0.036] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1416	chr6	108996962	108996963	rs3800229	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6q21	FOXO3	rs3800229-?	NR	6E-8				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1416	chr6	108996962	108996963	rs3800229	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6q21	FOXO3	rs3800229-?	NR	4E-6	(women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1416	chr6	108996962	108996963	rs3800229	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6q21	FOXO3	rs3800229-T	0.6703	3E-8		0.0213	[0.014-0.029] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1416	chr6	108996962	108996963	rs3800229	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6q21	FOXO3	rs3800229-T	0.6703	1E-6	(women)	0.0238	[0.014-0.033] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1416	chr6	108996962	108996963	rs3800229	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6q21	FOXO3A	rs3800229-T	0.6917	3E-8	(EA)	0.0211	[0.014-0.029] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1416	chr6	108998127	108998128	rs3800230	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	6q21	NA	rs3800230-T	0.8785	4E-15		0.0202	[0.015-0.025] unit increase	NR [~ 27400000] (imputed)	N
1416	chr6	108999100	108999101	rs1935951	35079123	Chambers T	2022-01-25	Mol Psychiatry	Genetic common variants associated with cerebellar volume and their overlap with mental disorders: a study on 33,265 individuals from the UK-Biobank.	Total cerebellar volume (excluding Crus I vermis)	33,265 European ancestry individuals	NA	6q21		rs1935951-A	NR	2E-11		0.0368	[0.026-0.048] unit increase	Affymetrix [6193476] (imputed)	N
1416	chr6	108999100	108999101	rs1935951	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	6q21		rs1935951-A	0.768555	6E-15		0.0250396	[0.019-0.031] unit increase	Illumina [13479924] (imputed)	N
1416	chr6	108999286	108999287	rs1935949	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	6q21		rs1935949-?	NR	5E-14				NR [~ 8900000] (imputed)	N
1416	chr6	109000315	109000316	rs9398173	32963231	Hofer E	2020-09-22	Nat Commun	Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.	Cortical surface area	18,617 European and African American ancestry individuals	22,363 European ancestry individuals	6q21	FOXO3	rs9398173-?		2E-10	(Global)			Affymetrix, Illumina [NR] (imputed)	N
1416	chr6	109000315	109000316	rs9398173	31636452	Satizabal CL	2019-10-21	Nat Genet	Genetic architecture of subcortical brain structures in 38,851 individuals.	Brainstem volume	28,809 European ancestry individuals	341 South East and East Asian ancestry individuals, 85 African American individuals	6q21	NR	rs9398173-T	0.331	1E-16		8.265	NR z score decrease	Affymetrix, Illumina [NR] (imputed)	N
1416	chr6	109000315	109000316	rs9398173	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6q21	FOXO3	rs9398173-T	NR	3E-9		5.923	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1416	chr6	109000741	109000742	rs4946935	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Creatinine levels	110,051 European ancestry individuals	NA	6q21		rs4946935-A	0.28663	3E-9		0.0234383	[0.016-0.031] unit decrease	NR [11722792] (imputed)	N
1416	chr6	109000741	109000742	rs4946935	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	6q21	NR	rs4946935-?	NR	4E-8	(right cerebellum white matter)			NR [9227495] (imputed)	N
1416	chr6	109000741	109000742	rs4946935	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	6q21	NR	rs4946935-?	NR	2E-8	(left cerebellum white matter)			NR [9227495] (imputed)	N
1416	chr6	109000741	109000742	rs4946935	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	6q21	NR	rs4946935-A	NR	3E-17		8.45	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1416	chr6	109000741	109000742	rs4946935	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	6q21	FOXO3	rs4946935-?	NR	8E-12		0.012285	[0.0088-0.0158] unit decrease	Affymetrix [805426] (imputed)	N
1416	chr6	109000741	109000742	rs4946935	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	6q21	FOXO3	rs4946935-A	NR	3E-14		0.024248688	[0.018-0.03] unit decrease	Affymetrix [NR]	N
1416	chr6	109002041	109002042	rs4945816	32963231	Hofer E	2020-09-22	Nat Commun	Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.	Cortical volume	22,824 European and African American ancestry individuals	NA	6q21	FOXO3	rs4945816-?		9E-10	(Global)			Affymetrix, Illumina [NR] (imputed)	N
1416	chr6	109002041	109002042	rs4945816	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	6q21	FOXO3	rs4945816-?	NR	9E-15		0.01703199	[0.013-0.021] unit increase	NR [7306098]	N
1416	chr6	109006837	109006838	rs1159806	32678081	Timmers PRHJ	2020-07-16	Nat Commun	Multivariate genomic scan implicates novel loci and haem metabolism in human ageing.	Aging traits (healthspan, parental lifespan or longevity) (multivariate analysis)	at least 837,415 European ancestry individuals	NA	6q21	FOXO3	rs1159806-T	0.3467	1E-8				NR [7320282]	N
1416	chr6	109006837	109006838	rs1159806	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	6q21	FOXO3	rs1159806-?	NR	2E-9		0.0202128	[0.014-0.027] unit decrease	Illumina [27896057] (imputed)	N
1416	chr6	109008157	109008158	rs1268168	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	6q21	FOXO3	rs1268168-A	0.3375	1E-16		0.0024	[0.0018-0.003] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
1416	chr6	109008182	109008183	rs1268167	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	6q21		rs1268167-A	0.240737	3E-9		0.0140191	[0.0094-0.0186] unit decrease	Illumina [13479295] (imputed)	N
1416	chr6	109009193	109009194	rs1268162	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	6q21	FOXO3	rs1268162-A	NR	1E-10		0.019623034	[0.014-0.026] unit increase	Affymetrix [NR]	N
1416	chr6	109011326	109011327	rs761779	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	6q21		rs761779-A	NR	4E-10		0.0177	[0.012-0.023] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
1416	chr6	109011832	109011833	rs1268161	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	6q21		rs1268161-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1416	chr6	109013929	109013930	rs9486916	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	NA	6q21	FOXO3	rs9486916-C	0.8025	2E-12		0.1842	[0.13-0.24] unit decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1416	chr6	109018045	109018046	rs1268176	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	6q21	FOXO3	rs1268176-A	0.344	5E-16		0.0027	[0.0019-0.0035] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
1416	chr6	109019605	109019606	rs531111	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	6q21		rs531111-T	0.821	7E-10		0.009	[0.007-0.011] unit increase	NR [NR] (imputed)	N
1416	chr6	109019720	109019721	rs532093	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	6q21		rs532093-?	NR	9E-10				NR [~ 8900000] (imputed)	N
1416	chr6	109020031	109020032	rs479744	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	6q21	NR	rs479744-?	NR	3E-10	(Brain stem)			NR [9227495] (imputed)	N
1416	chr6	109020031	109020032	rs479744	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	6q21	NR	rs479744-?	NR	1E-10	(left ventral DC)			NR [9227495] (imputed)	N
1416	chr6	109020031	109020032	rs479744	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	6q21	FOXO3	rs479744-?	NR	4E-9		0.010506	[0.007-0.014] unit increase	Affymetrix [805426] (imputed)	N
1416	chr6	109020331	109020332	rs557544	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	6q21	FOXO3	rs557544-?	NR	7E-9		0.010194	[0.0067-0.0136] unit increase	Affymetrix [805426] (imputed)	N
1416	chr6	109020331	109020332	rs557544	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	6q21	FOXO3	rs557544-T	NR	5E-8		0.017957335	[0.012-0.024] unit increase	Affymetrix [NR]	N
1416	chr6	109020633	109020634	rs4946938	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	6q21	Intergenic	rs4946938-T	0.9215	3E-10	(MTAG)	0.027	[0.019-0.035] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1416	chr6	109020633	109020634	rs4946938	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	6q21	Intergenic	rs4946938-T	0.9215	1E-8		0.0305	[0.02-0.041] unit increase	Affymetrix, Illumina [10100000] (imputed)	N
1416	chr6	109045984	109045985	rs59930455	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6q21	Intergenic	rs59930455-G	NR	6E-6	(men)	0.0354664	[0.02-0.051] unit increase	Illumina [13520550] (imputed)	N
1417	chr6	109073715	109073716	rs9386749	27723809	Matsunami K	2016-10-10	PLoS One	Genome-Wide Association Study Identifies ZNF354C Variants Associated with Depression from Interferon-Based Therapy for Chronic Hepatitis C.	Depression in response to interferon-based therapy in chronic hepatitis C	45 Japanese ancestry cases, 179 Japanese ancestry controls	40 Japanese ancestry cases, 120 Japanese ancestry controls	6q21	intergenic	rs9386749-?	NR	9E-6		2.173913	NR	Affymetrix [at least 551176] (imputed)	N
1417	chr6	109074741	109074742	rs117359272	26911590	Mullin BH	2016-02-25	BMC Genomics	Genome-wide association study using family-based cohorts identifies the WLS and CCDC170/ESR1 loci as associated with bone mineral density.	Bone mineral density (hip)	1,042 Northern European ancestry individuals	5,654 Northern European ancestry individuals	6q21	LINC00222	rs117359272-G	0.02	4E-7		0.39	[0.23-0.55] g/cm2 increase	Illumina [NR] (imputed)	N
1417	chr6	109074741	109074742	rs117359272	26911590	Mullin BH	2016-02-25	BMC Genomics	Genome-wide association study using family-based cohorts identifies the WLS and CCDC170/ESR1 loci as associated with bone mineral density.	Bone mineral density (femoral neck)	1,042 Northern European ancestry individuals	5,654 Northern European ancestry individuals	6q21	LINC00222	rs117359272-G	0.02	5E-7		0.41	[0.25-0.57] g/cm2 increase	Illumina [NR] (imputed)	N
1417	chr6	109078637	109078638	rs522730	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin I concentration	1,606 African American individuals	NA	6q21		rs522730-?	NR	6E-6		0.19	[0.11-0.27] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1417	chr6	109096582	109096583	rs193104780	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	6q21		rs193104780-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1417	chr6	109110273	109110274	rs2211447	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	6q21	NR	rs2211447-C	NR	5E-10		0.02	[0.014-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
1417	chr6	109127375	109127376	rs9374046	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small VLDL	115,082 European ancestry individuals	NA	6q21		rs9374046-G	0.605356	4E-8		0.0225273	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
1417	chr6	109129300	109129301	rs12201597	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	6q21		rs12201597-A	NR	3E-9		0.0169	[0.011-0.022] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
1417	chr6	109131106	109131107	rs34905321	30271922	Clifton EAD	2018-05-03	Commun Biol	Genome-wide association study for risk taking propensity indicates shared pathways with body mass index.	Self-reported risk-taking behaviour	113,882 European ancestry cases, 322,354 European ancestry controls	NA	6q21	ARMC2	rs34905321-T	0.57	4E-8		1.022	[1.014-1.031]	Affymetrix [7736308] (imputed)	N
1417	chr6	109133484	109133485	rs36153289	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Pancreas volume	31,758 European ancestry individuals	NA	6q21	ARMC2	rs36153289-?	NR	2E-8		0.0422	NR L decrease	Affymetrix [9390170] (imputed)	N
1417	chr6	109138912	109138913	rs475125	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	6q21	ARMC2	rs475125-A	0.507	1E-13		0.0088	[0.0064-0.0112] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
1417	chr6	109162093	109162094	rs6941263	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Valine levels	115,052 European ancestry individuals	NA	6q21		rs6941263-T	0.812162	4E-8		0.028383	[0.018-0.039] unit increase	NR [11722792] (imputed)	N
1417	chr6	109182943	109182944	rs1268055	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6q21		rs1268055-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1418	chr6	109189020	109189021	rs9480889	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6q21	ARMC2	rs9480889-C	NR	1E-9		0.0207791	[0.014-0.027] unit decrease	Affymetrix [319769] (imputed)	N
1418	chr6	109189020	109189021	rs9480889	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6q21	ARMC2	rs9480889-C	NR	1E-9		0.0208207	[0.014-0.028] unit decrease	Affymetrix [319769] (imputed)	N
1418	chr6	109189020	109189021	rs9480889	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	6q21	ARMC2	rs9480889-C	0.216863	1E-11		0.0163419	[0.012-0.021] unit decrease	Affymetrix [NR] (imputed)	N
1418	chr6	109189020	109189021	rs9480889	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	6q21	ARMC2	rs9480889-?	NR	1E-8		0.0182	[0.013-0.024] unit decrease	Affymetrix [5701386] (imputed)	N
1418	chr6	109189020	109189021	rs9480889	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	6q21	NR	rs9480889-C	0.21697	2E-8		0.00556501	[0.0036-0.0076] unit increase	Affymetrix [16582909] (imputed)	N
1418	chr6	109228679	109228680	rs4945823	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	6q21		rs4945823-A	NR	4E-10		0.0183	[0.013-0.024] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
1418	chr6	109245359	109245360	rs2754819	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6q21	SESN1	rs2754819-?	NR	2E-6	(LPC 14:0)	0.19896466	[0.12-0.28] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1418	chr6	109247306	109247307	rs1040848	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	6q21	NR	rs1040848-A	0.7569	3E-6		0.0097	[0.0056-0.0138] unit increase	NR [~ 27400000] (imputed)	N
1418	chr6	109263462	109263463	rs150216791	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	6q21	NR	rs150216791-?	NR	3E-9				Illumina [7760689] (imputed)	N
1418	chr6	109266254	109266255	rs2806356	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6q21	NR	rs2806356-C	0.18	1E-6		1.11	[1.06-1.15]	Affymetrix [9886854] (imputed)	N
1418	chr6	109266254	109266255	rs2806356	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6q21	NR	rs2806356-C	0.18	3E-10			[NR]	Affymetrix [9886854] (imputed)	N
1418	chr6	109266254	109266255	rs2806356	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6q21	NR	rs2806356-C	0.18	1E-10		1.1	[1.07-1.14]	Affymetrix [9886854] (imputed)	N
1418	chr6	109266254	109266255	rs2806356	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6q21	NR	rs2806356-C	0.18	8E-11			[NR]	Affymetrix [9886854] (imputed)	N
1418	chr6	109266254	109266255	rs2806356	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in non-current smokers	16,488 European ancestry cases, 169,688 European ancestry controls	NA	6q21	NR	rs2806356-C	0.18	1E-10		1.1	[1.07-1.14]	Affymetrix [9886854] (imputed)	N
1418	chr6	109266254	109266255	rs2806356	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in never smokers	8,631 European ancestry cases, 120,544 European ancestry controls	NA	6q21	NR	rs2806356-C	0.18	2E-6		1.1	[1.06-1.15]	Affymetrix [9886854] (imputed)	N
1418	chr6	109266254	109266255	rs2806356	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in ever smokers	12,446 European ancestry cases, 59,145 European ancestry controls	NA	6q21	NR	rs2806356-C	0.18	9E-6		1.09	[1.05-1.13]	Affymetrix [9886854] (imputed)	N
1418	chr6	109266254	109266255	rs2806356	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	6q21	ARMC2	rs2806356-C	0.18	3E-15		1.1	[1.08-1.13]	Affymetrix, Illumina [6224355] (imputed)	N
1418	chr6	109266254	109266255	rs2806356	28166215	Hobbs BD	2017-02-06	Nat Genet	Genetic loci associated with chronic obstructive pulmonary disease overlap with loci for lung function and pulmonary fibrosis.	Chronic obstructive pulmonary disease	11,157 European ancestry cases, 36,699 European ancestry controls, 1,142 African American cases, 2,380 African American controls, 199 Korean ancestry cases, 6,741 Korean ancestry controls, 52 Hispanic cases, 548 Hispanic controls.	12,051 European ancestry cases, 11,111 European ancestry controls, 153 Korean ancestry cases, 205 Korean ancestry controls.	6q21	ARMC2	rs2806356-C	0.18	8E-10		1.12	[1.08,1.16]	Affymetrix, Illumina [NR] (imputed)	N
1418	chr6	109268049	109268050	rs2798641	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	6q21	ARMC2	rs2798641-T	0.1829	3E-14		0.0247	[0.018-0.031] unit decrease	Affymetrix [19819130] (imputed)	N
1418	chr6	109268049	109268050	rs2798641	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	6q21	ARMC2	rs2798641-T	0.1829	4E-48		0.045	[0.039-0.051] unit decrease	Affymetrix [19819130] (imputed)	N
1418	chr6	109268049	109268050	rs2798641	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	6q21	ARMC2	rs2798641-T	0.1829	2E-26		0.0322	[0.026-0.038] unit decrease	Affymetrix [19819130] (imputed)	N
1418	chr6	109268049	109268050	rs2798641	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	6q21		rs2798641-?	NR	4E-80				NR [~ 8900000] (imputed)	N
1418	chr6	109268049	109268050	rs2798641	23284291	Hancock DB	2012-12-20	PLoS Genet	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (smoking interaction)	50,047 European ancestry individuals	NA	6q21	ARMC2	rs2798641-?	NR	2E-7	(FEV1, Pack-years)			NR [~ 2500000] (imputed)	N
1418	chr6	109268049	109268050	rs2798641	21946350	Soler Artigas M	2011-09-25	Nat Genet	Genome-wide association and large-scale follow up identifies 16 new loci influencing lung function.	Pulmonary function	48,201 European ancestry individuals	46,411 European ancestry individuals	6q21	ARMC2	rs2798641-T	0.18	8E-9	(FEV1/FVC)	0.041	[0.027-0.055] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1418	chr6	109268049	109268050	rs2798641	21946350	Soler Artigas M	2011-09-25	Nat Genet	Genome-wide association and large-scale follow up identifies 16 new loci influencing lung function.	Pulmonary function	48,201 European ancestry individuals	46,411 European ancestry individuals	6q21	ARMC2	rs2798641-T	0.18	5E-6	(FEV1)	0.03	[0.018-0.042] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1418	chr6	109270655	109270656	rs2768551	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FEV1/FVC)	48,943 European ancestry individuals	57,176 European ancestry individuals, 38,199 individuals.	6q21	ARMC2	rs2768551-A	0.191	6E-11		0.055	[0.039-0.071] unit decrease	Affymetrix [27624732] (imputed)	N
1418	chr6	109272904	109272905	rs11153138	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Phoneme awareness	3,093 European ancestry individuals	NA	6q21	ARMC2	rs11153138-C	0.617301429	2E-6		0.14716	[0.086-0.208] unit decrease	Illumina [6969139] (imputed)	N
1418	chr6	109285188	109285189	rs2273669	33293427	Emami NC	2020-12-08	Cancer Res	A large-scale association study detects novel rare variants, risk genes, functional elements, and polygenic architecture of prostate cancer susceptibility.	Prostate cancer	14,113 European ancestry cases, 194,140 European ancestry controls	NA	6q21	NR	rs2273669-G	NR	9E-7		1.1	NR	Affymetrix [at least 232408] (imputed)	N
1418	chr6	109285188	109285189	rs2273669	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	6q21	NR	rs2273669-G	0.15	3E-10		1.07	[1.05-1.10]	Illumina [20370935] (imputed)	N
1418	chr6	109285188	109285189	rs2273669	23535732	Eeles RA	2013-04-01	Nat Genet	Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array.	Prostate cancer	11,085 European ancestry cases, 11,463 European ancestry controls	19,662 European ancestry cases, 19,715 European ancestry controls	6q21	LACE1, LINC0022, LINC00222, ARMC2, SESN1, CEP57L1, FOXO3	rs2273669-G	0.15	8E-9		1.07	[1.03-1.11]	Illumina [~ 2600000] (imputed)	N
1418	chr6	109288035	109288036	rs76094073	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	6q21	ARMC2, SESN1	rs76094073-G	0.121207	2E-11		0.026513	[0.019-0.034] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1418	chr6	109290318	109290319	rs6568554	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	6q21	ARMC2, SESN1	rs6568554-A	0.14390800000000004	2E-9		0.026865	[0.018-0.036] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
1418	chr6	109295292	109295293	rs2038542	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 91,972 European ancestry controls	6,852 European ancestry cases, 193,117 European ancestry controls	6q21	NR	rs2038542-C	0.143982008	3E-6		1.1147456	[1.06-1.17]	Affymetrix, Illumina [20400945] (imputed)	N
1418	chr6	109295292	109295293	rs2038542	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	6q21	NR	rs2038542-C	NR	6E-13		1.067	[1.05-1.09]	Affymetrix, Illumina [29235255] (imputed)	N
1418	chr6	109298436	109298437	rs139306421	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4 on naive CD4+ T cell	2,910 Sardinian (founder/genetic isolate) ancestry individuals	NA	6q21		rs139306421-G	0.02345	3E-9		0.5447	[0.36-0.72] unit decrease	Illumina [17945511] (imputed)	N
1418	chr6	109299088	109299089	rs10456862	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6q21	ARMC2	rs10456862-G	0.120136	6E-31		0.03947666	[0.033-0.046] unit decrease	Affymetrix [93095623] (imputed)	N
1418	chr6	109299088	109299089	rs10456862	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	6q21	ARMC2	rs10456862-G	0.1201	3E-24		0.034887373	[0.028-0.042] unit decrease	Affymetrix [93095623] (imputed)	N
1418	chr6	109299088	109299089	rs10456862	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	6q21	ARMC2	rs10456862-G	0.120105	3E-31		0.0568835	[0.051-0.063] unit decrease	Affymetrix [93095623] (imputed)	N
1418	chr6	109304057	109304058	rs11153147	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	6q21	SESN1	rs11153147-G	0.119	3E-23		0.05415462	[0.043-0.065] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1418	chr6	109304169	109304170	rs118126621	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	6q21		rs118126621-?	NR	3E-14				NR [~ 8900000] (imputed)	N
1419	chr6	109325962	109325962	rs113614274	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	6q21	SESN1	rs113614274-CACAG	0.121087	8E-17		0.027522922	[0.021-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
1419	chr6	109329003	109329009	rs772675085	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	6q21	SESN1	rs772675085-TTTTTTG	0.893534	1E-8		1.0588179	[1.03822049480819-1.07982384660597]	NR [9572556] (imputed)	N
1419	chr6	109338146	109338147	rs12197912	31097437	Plotnikov D	2019-05-16	Br J Ophthalmol	Association between birth weight and refractive error in adulthood: a Mendelian randomisation study.	Birth weight	188,039 European ancestry individuals	NA	6q21	NR	rs12197912-T	0.12	4E-10		0.03	[0.02-0.04] z score increase	Affymetrix [up to 10400000] (imputed)	N
1419	chr6	109361860	109361860	rs756625282	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	6q21	SESN1	rs756625282-CTT	0.103695	1E-9		0.022881396	[0.015-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
1419	chr6	109361860	109361860	rs756625282	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6q21	SESN1	rs756625282-CTT	0.103691	2E-11		0.025187355	[0.018-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
1419	chr6	109370005	109370006	rs11759732	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	6q21	SESN1	rs11759732-A	0.85	3E-10				NR [> 9500000] (imputed)	N
1419	chr6	109372759	109372760	rs118036692	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	6q21		rs118036692-?	NR	4E-10				NR [~ 8900000] (imputed)	N
1419	chr6	109376117	109376118	rs11153158	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Prostate cancer	10,792 European ancestry cases, 410,350 European ancestry controls	NA	6q21		rs11153158-C	NR	1E-7		1.123217	NR	Affymetrix [7846216] (imputed)	N
1419	chr6	109376646	109376647	rs11153159	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6q21		rs11153159-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1419	chr6	109376646	109376647	rs11153159	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	6q21		rs11153159-?	NR	5E-14				NR [~ 8900000] (imputed)	N
1419	chr6	109389507	109389508	rs1364450	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hypothyroidism	30,155 European ancestry cases, 379,986 European ancestry controls, 1,114 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	6q21		rs1364450-C	NR	2E-10		0.0886	[0.061-0.116] unit increase	Affymetrix, Illumina [25801083] (imputed)	N
1419	chr6	109433149	109433150	rs192139693	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	6q21		rs192139693-?	NR	2E-19				NR [~ 8900000] (imputed)	N
1419	chr6	109440169	109440170	rs78664663	33768542	Liu Y	2021-03-26	Clin Pharmacol Ther	Class II HLA Variants Associate with Risk of Pegaspargase Hypersensitivity.	Asparaginase hypersensitivity in acute lymphoblastic leukemia	310 African ancestry individuals, 798 Native American individuals, 112 Asian ancestry individuals, 387 individuals	NA	6q21	NR	rs78664663-G	NR	5E-7		4.08		Illumina [NR] (imputed)	N
1420	chr6	109510971	109510972	rs7757193	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	6q21	CEP57L1	rs7757193-G	0.634684	8E-22		0.0190593	[0.015-0.023] unit increase	Affymetrix [NR] (imputed)	N
1420	chr6	109510971	109510972	rs7757193	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	6q21	CEP57L1	rs7757193-G	0.634579	5E-10		0.0127478	[0.0087-0.0168] unit increase	Affymetrix [NR] (imputed)	N
1420	chr6	109522750	109522751	rs1271693	33232274	Mohammadnejad A	2020-11-24	Aging (Albany NY)	Generalized correlation coefficient for genome-wide association analysis of cognitive ability in twins.	Cognitive function (generalized correlation coefficient)	900 Danish ancestry dizygotic twins, 272 Danish ancestry monozygotic twins	NA	6q21	NR	rs1271693-?	NR	5E-7			[NR]	Illumina [5779266] (imputed)	N
1420	chr6	109540849	109540850	rs13196629	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	6q21	C6orf183	rs13196629-A	0.096228	2E-20		0.0656303	[0.059-0.072] unit increase	Affymetrix [93095623] (imputed)	N
1420	chr6	109552433	109552434	rs351719	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	6q21	NR	rs351719-G	NR	1E-11		0.0185	[0.013-0.024] unit increase	Affymetrix [9000000] (imputed)	N
1420	chr6	109554232	109554233	rs12528081	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6q21	C6orf183	rs12528081-T	NR	5E-9		0.0170278	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
1420	chr6	109554232	109554233	rs12528081	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6q21	C6orf183	rs12528081-T	NR	8E-9		0.0168168	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
1420	chr6	109561645	109561646	rs9386774	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	6q21		rs9386774-T	NR	8E-13		0.0124	[0.0091-0.0157] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
1420	chr6	109561778	109561779	rs9386775	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	6q21	NR	rs9386775-C	0.432604	3E-22		0.018079	[0.014-0.022] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
1420	chr6	109562034	109562035	rs11964178	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	6q21	C6orf183	rs11964178-G	0.433319	4E-23		0.03787562	[0.03-0.045] unit decrease	Affymetrix [93095623] (imputed)	N
1420	chr6	109562034	109562035	rs11964178	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q21	NR	rs11964178-G	0.397511	3E-22				Affymetrix, Illumina [24558453] (imputed)	N
1420	chr6	109562034	109562035	rs11964178	28898252	Wheeler E	2017-09-12	PLoS Med	Impact of common genetic determinants of Hemoglobin A1c on type 2 diabetes risk and diagnosis in ancestrally diverse populations: A transethnic genome-wide meta-analysis.	Glycated hemoglobin levels	88,355 European ancestry individuals	NA	6q21	C6orf183	rs11964178-A	0.5666	6E-10		0.0096	[0.0065-0.0127] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1420	chr6	109562073	109562074	rs13211313	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q21	NR	rs13211313-G	0.570138	8E-13				Affymetrix, Illumina [17210439] (imputed)	N
1420	chr6	109562588	109562589	rs9320278	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	6q21	C6orf183	rs9320278-C	0.425095	7E-10		0.014049222	[0.0096-0.0185] unit decrease	Affymetrix [93095623] (imputed)	N
1420	chr6	109562588	109562589	rs9320278	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	6q21	C6orf183	rs9320278-C	0.42487	1E-13		0.016517583	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1420	chr6	109562588	109562589	rs9320278	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	6q21	NR	rs9320278-T	0.575357	4E-14		0.014713	[0.011-0.019] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1420	chr6	109562588	109562589	rs9320278	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	8,188 South Asian ancestry individuals	NA	6q21	NR	rs9320278-T	0.736811	2E-10		0.112611	[0.078-0.147] SD units decrease	Affymetrix, Illumina [28492174] (imputed)	N
1420	chr6	109562588	109562589	rs9320278	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	8,181 South Asian ancestry individuals	NA	6q21	NR	rs9320278-T	0.736682	5E-11		0.115558	[0.081-0.15] SD units decrease	Affymetrix, Illumina [28486451] (imputed)	N
1420	chr6	109570192	109570193	rs9374066	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6q21	C6orf183	rs9374066-A	0.421388	4E-11		0.0236225	[0.017-0.031] unit increase	Affymetrix [93095623] (imputed)	N
1420	chr6	109570192	109570193	rs9374066	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	6q21	C6orf183	rs9374066-A	0.421515	5E-43		0.031118741	[0.027-0.036] unit increase	Affymetrix [93095623] (imputed)	N
1420	chr6	109570192	109570193	rs9374066	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	6q21	C6orf183	rs9374066-A	0.421457	2E-13		0.016565757	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1420	chr6	109570192	109570193	rs9374066	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	8,189 South Asian ancestry individuals	NA	6q21	NR	rs9374066-A	0.256674	6E-10		0.1106	[0.076-0.146] SD units decrease	Affymetrix, Illumina [28493162] (imputed)	N
1420	chr6	109570192	109570193	rs9374066	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	121,047 East Asian ancestry individuals	NA	6q21	NR	rs9374066-G	0.897558	4E-24		0.069153	[0.056-0.083] SD units decrease	Affymetrix, Illumina [16286195] (imputed)	N
1420	chr6	109572410	109572411	rs3941888	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	6q21		rs3941888-?	NR	9E-10				NR [~ 8900000] (imputed)	N
1420	chr6	109574006	109574007	rs13209450	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	6q21	NR	rs13209450-T	NR	1E-12		0.0246	[0.018-0.031] unit decrease	Affymetrix [9000000] (imputed)	N
1420	chr6	109574094	109574095	rs884366	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	HDL cholesterol levels	34,930 East Asian ancestry individuals, 187,167 European ancestry individuals	8,741 Chinese ancestry individuals	6q21	LOC100996634	rs884366-A	0.318	2E-8	(Trans-ethnic initial)	0.0199	[0.013-0.027] unit decrease (EA Beta values)	Affymetrix, Illumina [~ 1900000] (imputed)	N
1420	chr6	109574094	109574095	rs884366	26780889	Below JE	2016-01-19	Sci Rep	Meta-analysis of lipid-traits in Hispanics identifies novel loci, population-specific effects, and tissue-specific enrichment of eQTLs.	HDL cholesterol	4,383 Mexican ancestry individuals	7,876 Latin American/Hispanic individuals,  European ancestry individuals (Global Lipids Genetics Consortium et al, 2013)	6q21	LOC100996634	rs884366-G	NR	1E-8		0.021	[0.015-0.031] unit increase	Affymetrix [at least 370268] (imputed)	N
1420	chr6	109576134	109576135	rs4548045	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	153,512 East Asian ancestry individuals	NA	6q21		rs4548045-T	0.095611	2E-17		0.0449913	[0.035-0.055] unit decrease	Illumina [13479135] (imputed)	N
1420	chr6	109576134	109576135	rs4548045	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	6q21		rs4548045-T	0.094979	3E-25		0.0630377	[0.051-0.075] unit increase	Illumina [13476266] (imputed)	N
1420	chr6	109576134	109576135	rs4548045	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	6q21		rs4548045-T	0.095197	2E-27		0.0665966	[0.055-0.079] unit increase	Illumina [13476299] (imputed)	N
1421	chr6	109576942	109576943	rs117368522	28155865	Chen H	2017-02-03	Sci Rep	A Genome-Wide Association Study Identifies Genetic Variants Associated with Mathematics Ability.	Mathematical ability	998 Han Chinese ancestry children	599 Han Chinese ancestry children	6q21	NR	rs117368522-A	0.02	7E-7		6.0	[3.63-8.37] unit decrease	Affymetrix [at least 1108437]	N
1421	chr6	109581247	109581248	rs71558361	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	6q21	C6orf183	rs71558361-A	0.146334	8E-37		0.043780167	[0.037-0.051] unit decrease	Affymetrix [93095623] (imputed)	N
1421	chr6	109582341	109582341	rs200980971	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	6q21	LOC100996634	rs200980971-TA	NR	3E-12		0.0445401	[0.032-0.057] unit decrease	Affymetrix [16832071] (imputed)	N
1421	chr6	109583655	109583656	rs9386779	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	UBA1448 sp002329405 abundance in stool	5,959 Finnish ancestry individuals	NA	6q21		rs9386779-G	0.344726	2E-8		0.0360423	[0.023-0.049] unit decrease	Illumina [7980478] (imputed)	N
1421	chr6	109583655	109583656	rs9386779	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	UBA1448 abundance in stool	5,959 Finnish ancestry individuals	NA	6q21		rs9386779-G	0.344726	3E-8		0.0389432	[0.025-0.053] unit decrease	Illumina [7980478] (imputed)	N
1421	chr6	109583798	109583799	rs36052053	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	6q21	C6orf183	rs36052053-A	0.1461	4E-46		0.0714402	[0.062-0.081] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1421	chr6	109584409	109584410	rs9386780	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	6q21		rs9386780-?	NR	1E-300				NR [~ 8900000] (imputed)	N
1421	chr6	109586655	109586656	rs932223	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	6q21	C6orf183	rs932223-C	0.478	3E-10		0.02257755	[0.016-0.03] unit increase	Affymetrix [~ 2500000] (imputed)	N
1421	chr6	109587436	109587436	rs71551364	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	6q21	C6orf183	rs71551364-AG	0.34617	1E-17		0.027809795	[0.021-0.034] unit increase	Affymetrix [93095623] (imputed)	N
1421	chr6	109590003	109590004	rs9487023	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	6q21		rs9487023-A	0.551	4E-212		0.34	[-0.36--0.31] % decrease	Affymetrix [NR] (imputed)	N
1421	chr6	109590003	109590004	rs9487023	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	6q21	C6orf183	rs9487023-G	0.448174	1E-62		0.04145409	[0.037-0.046] unit decrease	Affymetrix [93095623] (imputed)	N
1421	chr6	109590003	109590004	rs9487023	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	6q21	C6orf183	rs9487023-G	0.447997	8E-40		0.0469444	[0.04-0.054] unit decrease	Affymetrix [93095623] (imputed)	N
1421	chr6	109590003	109590004	rs9487023	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	6q21	C6orf183	rs9487023-G	0.447999	4E-28		0.0382377	[0.034-0.043] unit increase	Affymetrix [93095623] (imputed)	N
1421	chr6	109590003	109590004	rs9487023	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	6q21	C6orf183	rs9487023-G	0.448136	2E-288		0.080334	[0.076-0.085] unit increase	Affymetrix [93095623] (imputed)	N
1421	chr6	109590003	109590004	rs9487023	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	6q21	C6orf183	rs9487023-G	0.447954	3E-18		0.020157851	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1421	chr6	109590003	109590004	rs9487023	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q21	NR	rs9487023-A	0.56125	3E-204				Affymetrix, Illumina [22063850] (imputed)	N
1421	chr6	109590003	109590004	rs9487023	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	6q21	NR	rs9487023-A	0.553671	2E-200		0.056954	[0.053-0.061] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
1421	chr6	109590003	109590004	rs9487023	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	150,708 East Asian ancestry individuals	NA	6q21	NR	rs9487023-A	0.898172	1E-17		0.051791	[0.04-0.064] SD units increase	Affymetrix, Illumina [16709798] (imputed)	N
1421	chr6	109590003	109590004	rs9487023	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	6q21	NR	rs9487023-G	0.447256	1E-85		0.039389	[0.035-0.043] SD unit increase	Affymetrix, Illumina [50282193] (imputed)	N
1421	chr6	109590003	109590004	rs9487023	31624269	Terao C	2019-10-17	Nat Commun	GWAS of mosaic loss of chromosome Y highlights genetic effects on blood cell differentiation.	Mosaic loss of chromosome Y (Y chromosome dosage)	95,380 Japanese men	NA	6q21	C6orf183	rs9487023-A	0.1	4E-8		0.04	NR unit increase	Illumina [9591901] (imputed)	N
1421	chr6	109590003	109590004	rs9487023	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	6q21		rs9487023-?	NR	5E-22				NR [~ 8900000] (imputed)	N
1421	chr6	109590003	109590004	rs9487023	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	6q21	LOC100996634	rs9487023-G	NR	5E-57		0.0606571	[0.053-0.068] unit decrease	Affymetrix [16832071] (imputed)	N
1421	chr6	109590003	109590004	rs9487023	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	6q21	C6orf183	rs9487023-G	0.4456	5E-65		0.06080067	[0.054-0.068] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1421	chr6	109590003	109590004	rs9487023	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	6q21	C6orf183	rs9487023-G	0.4456	1E-13		0.02658125	[0.02-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
1421	chr6	109590003	109590004	rs9487023	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	6q21	C6orf183	rs9487023-G	0.4456	3E-118		0.08179771	[0.075-0.089] unit increase	Affymetrix [~ 2500000] (imputed)	N
1421	chr6	109590003	109590004	rs9487023	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin concentration	172,851 European ancestry individuals	NA	6q21	C6orf183	rs9487023-G	0.4455	1E-33		0.04210585	[0.035-0.049] unit increase	Affymetrix [~ 2500000] (imputed)	N
1421	chr6	109590003	109590004	rs9487023	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	6q21	C6orf183	rs9487023-G	0.4458	7E-138		0.08873202	[0.082-0.096] unit increase	Affymetrix [~ 2500000] (imputed)	N
1421	chr6	109590003	109590004	rs9487023	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	6q21	C6orf183	rs9487023-G	0.4455	2E-16		0.02949932	[0.022-0.037] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1421	chr6	109590003	109590004	rs9487023	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	6q21	C6orf183	rs9487023-G	0.4456	3E-18		0.03147124	[0.024-0.039] unit increase	Affymetrix [~ 2500000] (imputed)	N
1421	chr6	109592328	109592329	rs6910696	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	6q21	C6orf183	rs6910696-T	0.4782	8E-14		0.02728362	[0.02-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
1421	chr6	109596167	109596168	rs9372208	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	6q21	ENSG00000233908	rs9372208-?	NR	3E-9		0.012000529	[0.008-0.016] unit decrease	NR [7306098]	N
1421	chr6	109596308	109596309	rs11153164	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	6q21	CCDC162P	rs11153164-?		4E-8				Affymetrix, Illumina [NR] (imputed)	N
1421	chr6	109597640	109597641	rs6925716	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	6q21	intergenic	rs6925716-C	0.5132	2E-16		0.03004935	[0.023-0.037] unit increase	Affymetrix [~ 2500000] (imputed)	N
1421	chr6	109598212	109598213	rs4406271	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD34 on Hematopoietic Stem Cell	1,634 Sardinian (founder/genetic isolate) ancestry individuals	NA	6q21		rs4406271-A	0.4019	1E-12		0.2587	[0.19-0.33] unit decrease	Illumina [16999215] (imputed)	N
1421	chr6	109598550	109598551	rs185030778	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	6q21		rs185030778-?	NR	2E-16				NR [~ 8900000] (imputed)	N
1421	chr6	109598963	109598964	rs13210693	22138694	Lin Z	2011-12-04	Nat Genet	A genome-wide association study in Han Chinese identifies new susceptibility loci for ankylosing spondylitis.	Ankylosing spondylitis	1,837 Han Chinese ancestry cases, 4,231 Han Chinese ancestry controls	2,100 Han Chinese ancestry cases, 3,496 Han Chinese ancestry controls	6q21	intergenic	rs13210693-A	0.46	9E-7		1.15	[1.09-1.22]	Illumina [1356350] (imputed)	N
1421	chr6	109600522	109600523	rs9386788	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	6q21	NR	rs9386788-G	0.516736	4E-369		0.076585	[0.073-0.08] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
1421	chr6	109602358	109602359	rs7755970	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	6q21		rs7755970-C	NR	1E-16		0.0198	[0.015-0.025] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
1421	chr6	109602358	109602359	rs7755970	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	6q21		rs7755970-C	NR	5E-25		0.0239	[0.019-0.028] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1421	chr6	109602789	109602790	rs13204927	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	6q21		rs13204927-A	0.219709	2E-29		0.029639378	[0.024-0.035] unit increase	Affymetrix [93095623] (imputed)	N
1421	chr6	109602789	109602790	rs13204927	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	6q21	intergenic	rs13204927-A	0.2194	5E-30		0.04869638	[0.04-0.057] unit increase	Affymetrix [~ 2500000] (imputed)	N
1421	chr6	109605322	109605323	rs9487032	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	349,856 European ancestry individuals, 91,908 East Asian ancestry individuals	NA	6q21		rs9487032-T	NR	2E-8		0.0104	[0.0069-0.0139] unit increase	Affymetrix, Illumina [20529536] (imputed)	N
1421	chr6	109605322	109605323	rs9487032	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q21	NR	rs9487032-T	0.479356	6E-29				Affymetrix, Illumina [19905671] (imputed)	N
1421	chr6	109607555	109607556	rs9400271	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	6q21	RP11-425D10.1, CCDC162P	rs9400271-A	0.4836	3E-16		0.02925559	[0.022-0.036] unit increase	Affymetrix [~ 2500000] (imputed)	N
1421	chr6	109607555	109607556	rs9400271	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	6q21	RP11-425D10.1, CCDC162P	rs9400271-A	0.4836	3E-21		0.0339198	[0.027-0.041] unit increase	Affymetrix [~ 2500000] (imputed)	N
1421	chr6	109607555	109607556	rs9400271	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	6q21	RP11-425D10.1, CCDC162P	rs9400271-A	0.4836	3E-21		0.03395151	[0.027-0.041] unit increase	Affymetrix [~ 2500000] (imputed)	N
1421	chr6	109607555	109607556	rs9400271	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	6q21	RP11-425D10.1, CCDC162P	rs9400271-A	0.4835	2E-20		0.03322504	[0.026-0.04] unit increase	Affymetrix [~ 2500000] (imputed)	N
1421	chr6	109607555	109607556	rs9400271	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	6q21	RP11-425D10.1, CCDC162P	rs9400271-A	0.4836	3E-22		0.03495081	[0.028-0.042] unit increase	Affymetrix [~ 2500000] (imputed)	N
1421	chr6	109607555	109607556	rs9400271	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	6q21	RP11-425D10.1, CCDC162P	rs9400271-A	0.4836	5E-22		0.03462562	[0.028-0.042] unit increase	Affymetrix [~ 2500000] (imputed)	N
1421	chr6	109607957	109607958	rs6932503	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	6q21		rs6932503-A	NR	3E-10		0.0104	[0.0073-0.0135] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
1421	chr6	109608496	109608497	rs9386791	23446634	Chen Z	2013-02-26	Hum Mol Genet	Genome-wide association analysis of red blood cell traits in African Americans: the COGENT Network.	Red blood cell traits	Up to 16,485 African American individuals	9,692 African American individuals, 21,020 European ancestry individuals, 14,088 Japanese ancestry individuals	6q21	CD164	rs9386791-C	0.416	1E-8	(MCH, AA)	0.2294	[0.15-0.31] pg decrease	Affymetrix, Illumina [NR]	N
1421	chr6	109610001	109610002	rs9386793	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	6q21	PTCHD3P3	rs9386793-A	0.485951	2E-21		0.021284608	[0.017-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1421	chr6	109610473	109610474	rs9487043	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q21	NR	rs9487043-T	0.482771	6E-34				Affymetrix, Illumina [24649327] (imputed)	N
1421	chr6	109610473	109610474	rs9487043	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	6q21	NR	rs9487043-T	0.486515	4E-36		0.023076	[0.019-0.027] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
1421	chr6	109612343	109612344	rs6924815	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	6q21	NR	rs6924815-G	0.486773	3E-405		0.082091	[0.078-0.086] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
1421	chr6	109613240	109613241	rs6568570	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	6q21		rs6568570-?	NR	5E-175				NR [~ 8900000] (imputed)	N
1421	chr6	109613251	109613252	rs6568571	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Red blood cell count	up to 40,258 European ancestry individuals, up to 16,128 African American individuals, up to 15,252 East Asian individuals.	16,389 individuals of European and African American ancestry.	6q21	CD164	rs6568571-?	NR	1E-8				NR [2500000] (imputed)	N
1421	chr6	109613251	109613252	rs6568571	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular hemoglobin	up to 21,020 European ancestry individuals, up to 3,621 African American individuals, up to 15,062 East Asian individuals.	16,389 individuals of European and African American ancestry.	6q21	CD164	rs6568571-?	NR	8E-21				NR [2500000] (imputed)	N
1421	chr6	109613563	109613564	rs7748918	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6q21	CCDC162P	rs7748918-C	0.456082	6E-11		0.023179192	[0.016-0.03] unit increase	Affymetrix [93095623] (imputed)	N
1421	chr6	109613563	109613564	rs7748918	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	6q21	CCDC162P	rs7748918-C	0.456187	4E-239		0.0824123	[0.078-0.086] unit increase	Affymetrix [93095623] (imputed)	N
1421	chr6	109613985	109613986	rs1521908	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q21	NR	rs1521908-C	0.480621	3E-389				Affymetrix, Illumina [24246363] (imputed)	N
1421	chr6	109614843	109614844	rs13203155	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red cell distribution width	6,141 African American individuals, 17,272 Hispanic or Latin American individuals, 9,611 European ancestry individuals, 123 Asian ancestry individuals, 20 Native American ancestry individuals, 382 individuals	NA	6q21		rs13203155-?	0.5976	8E-6		0.0358	[0.02-0.051] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
1421	chr6	109614843	109614844	rs13203155	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red blood cell count	8,679 African American individuals, 17,412 Hispanic or Latin American individuals, 14,690 European ancestry individuals, 127 Asian ancestry individuals, 20 Native American ancestry individuals, 382 individuals	NA	6q21		rs13203155-?	0.5976	7E-14		0.0223	[0.016-0.028] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
1421	chr6	109614843	109614844	rs13203155	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red blood cell count	17,412 Hispanic or Latin American individuals	NA	6q21		rs13203155-?	0.686	1E-6		0.0234	[0.014-0.033] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
1421	chr6	109614843	109614844	rs13203155	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red blood cell count	14,690 European ancestry individuals	NA	6q21		rs13203155-?	0.5538	3E-7		0.0217	[0.013-0.03] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
1421	chr6	109614843	109614844	rs13203155	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular volume	8,556 African American individuals, 17,141 Hispanic or Latin American individuals, 14,483 European ancestry individuals, 125 Asian ancestry individuals, 594 Native American ancestry individuals, 377 individuals	NA	6q21		rs13203155-?	0.5976	2E-12		0.2713	[0.2-0.35] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
1421	chr6	109614843	109614844	rs13203155	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular volume	14,483 European ancestry individuals	NA	6q21		rs13203155-?	0.5538	2E-9		0.3076	[0.21-0.41] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
1421	chr6	109614843	109614844	rs13203155	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin concentration	20,877 Hispanic or Latin American individuals	NA	6q21		rs13203155-?	0.686	6E-6		0.0524	[0.03-0.075] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
1421	chr6	109614843	109614844	rs13203155	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin concentration	16,353 African American individuals, 20,877 Hispanic or Latin American individuals, 29,587 European ancestry individuals, 635 Asian ancestry individuals, 20 Native American ancestry individuals, 384 individuals	NA	6q21		rs13203155-?	0.5976	2E-8		0.0326	[0.021-0.044] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
1421	chr6	109614843	109614844	rs13203155	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin	8,694 African American individuals, 17,400 Hispanic or Latin American individuals, 14,693 European ancestry individuals, 127 Asian ancestry individuals, 20 Native American ancestry individuals, 382 individuals	NA	6q21		rs13203155-?	0.5976	3E-14		0.1128	[0.084-0.142] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
1421	chr6	109614843	109614844	rs13203155	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin	17,400 Hispanic or Latin American individuals	NA	6q21		rs13203155-?	0.686	5E-7		0.1263	[0.077-0.176] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
1421	chr6	109614843	109614844	rs13203155	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin	14,693 European ancestry individuals	NA	6q21		rs13203155-?	0.5538	4E-9		0.1176	[0.078-0.157] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
1421	chr6	109614904	109614905	rs13219432	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	6q21	NR	rs13219432-C	0.454777	1E-225		0.058989	[0.055-0.063] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1421	chr6	109616419	109616420	rs9374080	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular volume	up to 29,946 European ancestry individuals, up to 6150 African American individuals, 15,074 East Asian individuals.	16,389 individuals of European and African American ancestry.	6q21	CD164	rs9374080-T	NR	3E-6	(Asian)	0.0045	[0.0025-0.0065] unit decrease	NR [2500000] (imputed)	N
1421	chr6	109616419	109616420	rs9374080	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular volume	up to 29,946 European ancestry individuals, up to 6150 African American individuals, 15,074 East Asian individuals.	16,389 individuals of European and African American ancestry.	6q21	CD164	rs9374080-?	NR	6E-17				NR [2500000] (imputed)	N
1421	chr6	109616419	109616420	rs9374080	19862010	Ganesh SK	2009-10-11	Nat Genet	Multiple loci influence erythrocyte phenotypes in the CHARGE Consortium.	Mean corpuscular volume	24,167 European ancestry individuals	9,456 European ancestry individuals	6q21	CD164	rs9374080-C	NR	4E-10		0.0	[0.002-0.003] fl decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1421	chr6	109617069	109617070	rs9480924	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Red blood cell count	20,220 Amish, White ancestry individuals, 384 Asian ancestry individuals, 10,747 Black individuals, 13,119 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	6q21		rs9480924-C	NR	9E-14		0.02	[0.02-0.02] unit decrease	Illumina [92652022]	N
1421	chr6	109617069	109617070	rs9480924	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular volume	22,267 Amish, White ancestry individuals, 447 Asian ancestry individuals, 12,285 Black individuals, 13,831 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	6q21		rs9480924-C	NR	2E-18		0.33	[0.25-0.41] unit increase	Illumina [97506867]	N
1421	chr6	109617069	109617070	rs9480924	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular hemoglobin	20,714 Amish, White ancestry individuals, 447 Asian ancestry individuals, 11,246 Black individuals, 13,834 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	6q21		rs9480924-C	NR	3E-22		0.15	[0.13-0.17] unit increase	Illumina [94681438]	N
1421	chr6	109617069	109617070	rs9480924	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	6q21	CCDC162P	rs9480924-C	0.4552	1E-64		0.06067579	[0.054-0.068] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1421	chr6	109617078	109617079	rs9487051	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	6q21	CCDC162P	rs9487051-G	0.4549	3E-19		0.0326085	[0.025-0.04] unit increase	Affymetrix [~ 2500000] (imputed)	N
1421	chr6	109617657	109617657	rs112273618	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	6q21		rs112273618-AAAG	NR	1E-10		0.0123	[0.0086-0.016] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
1421	chr6	109617657	109617657	rs112273618	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	6q21		rs112273618-AAAG	NR	2E-11		0.0133	[0.0094-0.0172] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1421	chr6	109618703	109618704	rs9386796	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation GrimAge acceleration	34,467 European ancestry individuals	NA	6q21	NR	rs9386796-T	0.4597	2E-11		0.1983	[0.14-0.26] unit increase	Affymetrix, Illumina [7568149] (imputed)	N
1421	chr6	109619376	109619377	rs9320282	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count (basophil)	171,846 European ancestry individuals	NA	6q21	CCDC162P	rs9320282-G	0.5209	1E-22		0.03422972	[0.027-0.041] unit increase	Affymetrix [~ 2500000] (imputed)	N
1421	chr6	109619376	109619377	rs9320282	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of white cells	171,996 European ancestry individuals	NA	6q21	CCDC162P	rs9320282-G	0.5209	3E-12		0.02423685	[0.017-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
1421	chr6	109619696	109619697	rs9487053	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6q21		rs9487053-T	0.477	6E-14				Affymetrix [10369434] (imputed)	N
1421	chr6	109621493	109621494	rs6927569	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6q21	CCDC162P	rs6927569-C	0.523059	5E-27		0.023700206	[0.019-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1421	chr6	109621493	109621494	rs6927569	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	6q21	CCDC162P	rs6927569-C	0.523124	5E-37		0.028118432	[0.024-0.032] unit increase	Affymetrix [93095623] (imputed)	N
1421	chr6	109621493	109621494	rs6927569	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	6q21	CCDC162P	rs6927569-C	0.523079	3E-17		0.018837571	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1421	chr6	109621493	109621494	rs6927569	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q21	NR	rs6927569-C	0.51893	5E-38				Affymetrix, Illumina [23114412] (imputed)	N
1421	chr6	109621493	109621494	rs6927569	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	6q21	NR	rs6927569-C	0.523171	2E-41		0.025882	[0.022-0.03] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
1421	chr6	109624480	109624481	rs13220206	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	6q21	CCDC162P	rs13220206-T	0.143	4E-19		0.0497088	[0.044-0.056] unit increase	Affymetrix [93095623] (imputed)	N
1421	chr6	109624770	109624771	rs11961369	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	6q21		rs11961369-A	NR	2E-36		0.0279	[0.024-0.032] unit increase	Affymetrix, Illumina [20536605] (imputed)	N
1421	chr6	109625795	109625796	rs1546721	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	6q21		rs1546721-C	NR	3E-8		0.0122	[0.0079-0.0165] unit decrease	Affymetrix, Illumina [20529698] (imputed)	N
1421	chr6	109625795	109625796	rs1546721	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	6q21	NR	rs1546721-T	0.621092	3E-8		0.0112037	[0.0072-0.0152] unit increase	NR [NR]	N
1421	chr6	109625878	109625879	rs1546723	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	6q21		rs1546723-A	NR	9E-151		0.0499	[0.046-0.054] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
1421	chr6	109625878	109625879	rs1546723	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	6q21		rs1546723-A	NR	1E-26		0.0244	[0.02-0.029] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
1421	chr6	109625878	109625879	rs1546723	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	6q21		rs1546723-A	NR	3E-255		0.0756	[0.071-0.08] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
1421	chr6	109625878	109625879	rs1546723	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	6q21		rs1546723-A	NR	1E-298		0.0817	[0.077-0.086] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
1421	chr6	109625878	109625879	rs1546723	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	6q21	CCDC162P	rs1546723-A	0.448065	1E-19		0.020922396	[0.016-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1421	chr6	109625878	109625879	rs1546723	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	6q21	CCDC162P	rs1546723-A	0.447987	2E-16		0.019131456	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1421	chr6	109625878	109625879	rs1546723	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	6q21	CCDC162P	rs1546723-A	0.447963	4E-21		0.02178324	[0.017-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1421	chr6	109625878	109625879	rs1546723	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q21	NR	rs1546723-A	0.369251	2E-248				Affymetrix, Illumina [24332387] (imputed)	N
1421	chr6	109625878	109625879	rs1546723	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q21	NR	rs1546723-A	0.373617	2E-87				Affymetrix, Illumina [21126107] (imputed)	N
1421	chr6	109625878	109625879	rs1546723	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	119,629 East Asian ancestry individuals	NA	6q21	NR	rs1546723-G	0.902623	3E-26		0.073002	[0.06-0.086] SD units decrease	Affymetrix, Illumina [16286228] (imputed)	N
1421	chr6	109625878	109625879	rs1546723	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	6q21		rs1546723-?	NR	6E-201				NR [~ 8900000] (imputed)	N
1421	chr6	109626964	109626965	rs1008084	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation GrimAge acceleration	34,467 European ancestry individuals, 6,148 African American individuals	NA	6q21	NR	rs1008084-?	NR	5E-15				Affymetrix, Illumina [6210740] (imputed)	N
1421	chr6	109626964	109626965	rs1008084	28453575	Hodonsky CJ	2017-04-28	PLoS Genet	Genome-wide association study of red blood cell traits in Hispanics/Latinos: The Hispanic Community Health Study/Study of Latinos.	Mean corpuscular hemoglobin	12,502 Hispanic/Latino individuals	4,772 Hispanic/Latino individuals	6q21	CCDC162P	rs1008084-G	0.70	2E-6		0.144	[0.085-0.203] pg decrease	Illumina [27801688] (imputed)	N
1421	chr6	109626964	109626965	rs1008084	23222517	van der Harst P	2012-12-05	Nature	Seventy-five genetic loci influencing the human red blood cell.	Red blood cell traits	62,553 European ancestry individuals, 9,308 South Asian ancestry individuals	63,506 European ancestry individuals	6q21	CCDC162P	rs1008084-G	0.56	6E-26	(EA, MCH)	0.01	[0.0041-0.0159] unit decrease	Affymetrix, Illumina, Perlegen [2711806] (imputed)	N
1421	chr6	109631781	109631782	rs9374081	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	6q21	CCDC162P	rs9374081-G	0.3397	3E-12		0.02635668	[0.019-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
1421	chr6	109632798	109632799	rs9400273	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	6q21	NR	rs9400273-G	0.455224	8E-40		0.024249	[0.021-0.028] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1421	chr6	109632798	109632799	rs9400273	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin	108,054 Japanese ancestry individuals	NA	6q21	CCDC162P, CD164	rs9400273-?	NR	8E-25		0.07353	[0.06-0.088] unit increase novel	Illumina [6108953] (imputed)	N
1421	chr6	109632798	109632799	rs9400273	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Red blood cell count	up to 40,258 European ancestry individuals, up to 16,128 African American individuals, up to 15,252 East Asian individuals.	16,389 individuals of European and African American ancestry.	6q21	CD164	rs9400273-A	NR	2E-7	(Asian)	0.01	[0.0063-0.0137] unit increase	NR [2500000] (imputed)	N
1421	chr6	109632798	109632799	rs9400273	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular hemoglobin	up to 21,020 European ancestry individuals, up to 3,621 African American individuals, up to 15,062 East Asian individuals.	16,389 individuals of European and African American ancestry.	6q21	CD164	rs9400273-A	NR	7E-8	(Asian)	0.006	[0.0038-0.0082] unit decrease	NR [2500000] (imputed)	N
1421	chr6	109634598	109634599	rs13191948	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	6q21	CCDC162P	rs13191948-T	0.456858	4E-28		0.024742423	[0.02-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1421	chr6	109634598	109634599	rs13191948	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q21	NR	rs13191948-T	0.383081	2E-487				Affymetrix, Illumina [20825802] (imputed)	N
1421	chr6	109634598	109634599	rs13191948	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Red blood cell count	108,794 Japanese ancestry individuals	NA	6q21	CCDC162P, CD164	rs13191948-?	NR	1E-14		0.0549	[0.041-0.069] unit decrease novel	Illumina [6108953] (imputed)	N
1421	chr6	109634598	109634599	rs13191948	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular volume	108,256 Japanese ancestry individuals	NA	6q21	CCDC162P, CD164	rs13191948-?	NR	3E-23		0.07101	[0.057-0.085] unit increase novel	Illumina [6108953] (imputed)	N
1421	chr6	109634598	109634599	rs13191948	28346444	Wright DJ	2017-03-27	Nat Genet	Genetic variants associated with mosaic Y chromosome loss highlight cell cycle genes and overlap with cancer susceptibility.	Mosaic loss of chromosome Y (Y chromosome dosage)	67,034 European ancestry men	8,715 European ancestry men, 9,793 men	6q21	CCDC162P	rs13191948-C	0.54	2E-19		0.002	NR unit decrease	Affymetrix [at least 641018] (imputed)	N
1421	chr6	109634827	109634828	rs11966072	20139978	Kamatani Y	2010-02-07	Nat Genet	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Red blood cell count	14,392 Japanese ancestry individuals	NA	6q21	C6orf182, CD164	rs11966072-G	0.1	7E-9		0.114	[0.075-0.153] unit decrease	Illumina [561583]	N
1421	chr6	109634827	109634828	rs11966072	20139978	Kamatani Y	2010-02-07	Nat Genet	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Mean corpuscular volume	14,364 Japanese ancestry individuals	NA	6q21	C6orf182, CD164	rs11966072-G	0.1	3E-8		0.11	[0.071-0.149] unit increase	Illumina [561583]	N
1421	chr6	109634827	109634828	rs11966072	20139978	Kamatani Y	2010-02-07	Nat Genet	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Mean corpuscular hemoglobin	Up to 14,362 Japanese ancestry individuals	NA	6q21	C6orf182, CD164	rs11966072-G	0.1	1E-8		0.111	[0.072-0.15] unit increase	Illumina [561583]	N
1421	chr6	109635558	109635558	rs5879021	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	6q21	NR	rs5879021-I	0.521166	4E-27		0.022991	[0.019-0.027] SD unit increase	Affymetrix, Illumina [50036608] (imputed)	N
1421	chr6	109636204	109636205	rs6913093	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q21	NR	rs6913093-C	0.513324	4E-37				Affymetrix, Illumina [24588908] (imputed)	N
1421	chr6	109638827	109638828	rs4945829	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	6q21	CCDC162P	rs4945829-T	0.655214	4E-11		0.012809	[0.009-0.0166] unit decrease	NR [13737936] (imputed)	N
1421	chr6	109638827	109638828	rs4945829	28235828	Traglia M	2017-04-03	G3 (Bethesda)	Independent Maternal and Fetal Genetic Effects on Midgestational Circulating Levels of Environmental Pollutants.	Midgestational circulating levels of PCBs	329 Hispanic mothers, 273 European ancestry mothers, 122 Asian ancestry mothers, 23 South Asian ancestry mothers, 21 African American mothers, 22 other ancestry mothers	NA	6q21	CCDC162P, CEP57L1, CD164	rs4945829-?		7E-7	(PCB194)	0.15	[0.091-0.209] unit decrease	Affymetrix [629686]	N
1421	chr6	109638827	109638828	rs4945829	28235828	Traglia M	2017-04-03	G3 (Bethesda)	Independent Maternal and Fetal Genetic Effects on Midgestational Circulating Levels of Environmental Pollutants.	Midgestational circulating levels of PCBs	329 Hispanic mothers, 273 European ancestry mothers, 122 Asian ancestry mothers, 23 South Asian ancestry mothers, 21 African American mothers, 22 other ancestry mothers	NA	6q21	CCDC162P, CEP57L1, CD164	rs4945829-?		4E-7	(PCB199)	0.17	[0.11-0.23] unit decrease	Affymetrix [629686]	N
1421	chr6	109638827	109638828	rs4945829	28235828	Traglia M	2017-04-03	G3 (Bethesda)	Independent Maternal and Fetal Genetic Effects on Midgestational Circulating Levels of Environmental Pollutants.	Midgestational circulating levels of PCBs	329 Hispanic mothers, 273 European ancestry mothers, 122 Asian ancestry mothers, 23 South Asian ancestry mothers, 21 African American mothers, 22 other ancestry mothers	NA	6q21	CCDC162P, CEP57L1, CD164	rs4945829-?		4E-7	(PCB199)	0.17	[0.11-0.23] unit decrease	Affymetrix [629686]	N
1421	chr6	109638827	109638828	rs4945829	28235828	Traglia M	2017-04-03	G3 (Bethesda)	Independent Maternal and Fetal Genetic Effects on Midgestational Circulating Levels of Environmental Pollutants.	Midgestational circulating levels of PCBs	329 Hispanic mothers, 273 European ancestry mothers, 122 Asian ancestry mothers, 23 South Asian ancestry mothers, 21 African American mothers, 22 other ancestry mothers	NA	6q21	CCDC162P, CEP57L1, CD164	rs4945829-?		4E-6	(PCB180)	0.14	[0.081-0.199] unit decrease	Affymetrix [629686]	N
1421	chr6	109638827	109638828	rs4945829	28235828	Traglia M	2017-04-03	G3 (Bethesda)	Independent Maternal and Fetal Genetic Effects on Midgestational Circulating Levels of Environmental Pollutants.	Midgestational circulating levels of PCBs	329 Hispanic mothers, 273 European ancestry mothers, 122 Asian ancestry mothers, 23 South Asian ancestry mothers, 21 African American mothers, 22 other ancestry mothers	NA	6q21	CCDC162P, CEP57L1, CD164	rs4945829-?		3E-6	(PCB187)	0.16	[0.1-0.22] unit decrease	Affymetrix [629686]	N
1421	chr6	109638827	109638828	rs4945829	28235828	Traglia M	2017-04-03	G3 (Bethesda)	Independent Maternal and Fetal Genetic Effects on Midgestational Circulating Levels of Environmental Pollutants.	Midgestational circulating levels of PCBs	329 Hispanic mothers, 273 European ancestry mothers, 122 Asian ancestry mothers, 23 South Asian ancestry mothers, 21 African American mothers, 22 other ancestry mothers	NA	6q21	CCDC162P, CEP57L1, CD164	rs4945829-?		1E-7	(PCB196/203)	0.16	[0.1-0.22] unit decrease	Affymetrix [629686]	N
1421	chr6	109638827	109638828	rs4945829	28235828	Traglia M	2017-04-03	G3 (Bethesda)	Independent Maternal and Fetal Genetic Effects on Midgestational Circulating Levels of Environmental Pollutants.	Midgestational circulating levels of PCBs	329 Hispanic mothers, 273 European ancestry mothers, 122 Asian ancestry mothers, 23 South Asian ancestry mothers, 21 African American mothers, 22 other ancestry mothers	NA	6q21	CCDC162P, CEP57L1, CD164	rs4945829-?		1E-7	(PCB196/203)	0.16	[0.1-0.22] unit decrease	Affymetrix [629686]	N
1421	chr6	109640863	109640864	rs77243579	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	6q21		rs77243579-G	NR	8E-12		0.0144	[0.01-0.019] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
1421	chr6	109640863	109640864	rs77243579	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	6q21	CCDC162P	rs77243579-A	0.659294	1E-13		0.00183762	[0.0014-0.0023] unit increase	Affymetrix [13995440] (imputed)	N
1421	chr6	109640863	109640864	rs77243579	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6q21		rs77243579-?	NR	3E-10		0.0134244	[0.0091-0.0178] unit decrease	Affymetrix [20259828] (imputed)	N
1421	chr6	109641410	109641411	rs4946957	28235828	Traglia M	2017-04-03	G3 (Bethesda)	Independent Maternal and Fetal Genetic Effects on Midgestational Circulating Levels of Environmental Pollutants.	Midgestational circulating levels of PCBs	329 Hispanic mothers, 273 European ancestry mothers, 122 Asian ancestry mothers, 23 South Asian ancestry mothers, 21 African American mothers, 22 other ancestry mothers	NA	6q21	CCDC162P, CEP57L1, CD164	rs4946957-?		1E-6	(PCB180)	0.15	[0.091-0.209] unit decrease	Affymetrix [629686]	N
1421	chr6	109641874	109641874	rs11381821	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	6q21		rs11381821-CA	NR	8E-20		0.0191	[0.015-0.023] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
1421	chr6	109643605	109643605	rs35424364	26977737	Cade BE	2016-03-15	Am J Respir Crit Care Med	Genetic Associations with Obstructive Sleep Apnea Traits in Hispanic/Latino Americans.	Obstructive sleep apnea trait (average respiratory event duration)	10,238 Hispanic/Latin American ancestry individuals	214 Asian ancestry individuals, 1,183 African American ancestry individuals, 5,638 European ancestry individuals	6q21	NR	rs35424364-A	NR	8E-8	(Hispanic, females)	0.04	[0.024-0.056] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1421	chr6	109643605	109643605	rs35424364	26977737	Cade BE	2016-03-15	Am J Respir Crit Care Med	Genetic Associations with Obstructive Sleep Apnea Traits in Hispanic/Latino Americans.	Obstructive sleep apnea trait (average respiratory event duration)	10,238 Hispanic/Latin American ancestry individuals	214 Asian ancestry individuals, 1,183 African American ancestry individuals, 5,638 European ancestry individuals	6q21	C6ORF183, CCDC162P	rs35424364-A	0.129	2E-8	(Hispanic)	0.032	[0.020-0.044] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1421	chr6	109648129	109648130	rs1832777	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	91,908 East Asian ancestry individuals	NA	6q21		rs1832777-G	0.464089	3E-9		0.0272692	[0.018-0.036] unit increase	Illumina [13469940] (imputed)	N
1421	chr6	109648129	109648130	rs1832777	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q21	NR	rs1832777-G	0.518219	3E-14				Affymetrix, Illumina [19872809] (imputed)	N
1421	chr6	109648129	109648130	rs1832777	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	6q21	NR	rs1832777-G	0.521522	2E-14		0.015369	[0.011-0.019] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
1421	chr6	109648352	109648353	rs12191774	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	6q21		rs12191774-G	NR	4E-8		0.0123	[0.008-0.0166] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
1421	chr6	109652235	109652236	rs13220304	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	6q21	NR	rs13220304-A	NR	6E-13		0.0193	[0.014-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
1421	chr6	109653824	109653825	rs11153171	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	6q21	CCDC162P	rs11153171-T	0.354925	1E-12		0.017043786	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1421	chr6	109653824	109653825	rs11153171	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6q21	CCDC162P	rs11153171-T	0.354936	2E-18		0.020393824	[0.016-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1421	chr6	109654131	109654132	rs12529733	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	6q21	CCDC162P, CD164	rs12529733-?	NR	2E-9		0.017386423	[0.012-0.023] unit decrease	Illumina [27896057] (imputed)	N
1421	chr6	109661540	109661541	rs12528822	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	6q21	CCDC162P	rs12528822-C	0.330341	7E-12		0.01621881	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1421	chr6	109681660	109681661	rs1074765	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	6q21		rs1074765-?	NR	1E-7				NR [~ 8900000] (imputed)	N
1421	chr6	109681660	109681661	rs1074765	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6q21		rs1074765-?	NR	1E-47				NR [~ 8900000] (imputed)	N
1421	chr6	109689906	109689907	rs11251	31624269	Terao C	2019-10-17	Nat Commun	GWAS of mosaic loss of chromosome Y highlights genetic effects on blood cell differentiation.	Mosaic loss of chromosome Y (Y chromosome dosage)	95,380 Japanese men	NA	6q21	CD164	rs11251-T	0.54	3E-11		0.028	NR unit increase	Illumina [9591901] (imputed)	N
1421	chr6	109689906	109689907	rs11251	31624269	Terao C	2019-10-17	Nat Commun	GWAS of mosaic loss of chromosome Y highlights genetic effects on blood cell differentiation.	Mosaic loss of chromosome Y (Y chromosome dosage)	205,011 men	NA	6q21	CD164	rs11251-G	0.61	2E-30		0.013	unit increase	NR [NR]	N
1421	chr6	109699445	109699446	rs35452836	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	6q21	CD164	rs35452836-T	0.286890187	3E-6		1.0622944	[1.035770318-1.089497568]	Illumina [10439017] (imputed)	N
1421	chr6	109703026	109703027	rs12208785	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	White blood cell count (basophil)	62,076 Japanese ancestry individuals	NA	6q21	CD164	rs12208785-?	NR	4E-10		0.04324	[0.03-0.057] unit increase novel	Illumina [6108953] (imputed)	N
1421	chr6	109703682	109703683	rs2275652	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	6q21	CD164	rs2275652-C	0.2979	1E-11		0.02654847	[0.019-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
1422	chr6	109708301	109708301	rs200998194	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	6q21		rs200998194-AT	NR	7E-19		0.0223	[0.017-0.027] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
1422	chr6	109708301	109708301	rs200998194	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	6q21	NR	rs200998194-I	0.298933	6E-12		0.01533	[0.011-0.02] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1422	chr6	109719527	109719528	rs147445198	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	6q21		rs147445198-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1422	chr6	109723017	109723017	rs10691068	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	6q21		rs10691068-TCC	NR	5E-36		0.0163	[0.014-0.019] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1422	chr6	109723938	109723939	rs6920372	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	6q21	PPIL6	rs6920372-A	0.413	2E-17		0.025	[0.019-0.031] unit decrease	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
1422	chr6	109724489	109724490	rs6920962	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	6q21		rs6920962-?	NR	5E-10				NR [~ 8900000] (imputed)	N
1422	chr6	109725153	109725154	rs13192476	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	6q21		rs13192476-A	NR	3E-8		0.0131	[0.0086-0.0176] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
1422	chr6	109725153	109725154	rs13192476	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6q21	PPIL6	rs13192476-A	0.298043	5E-10		0.01497831	[0.01-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1422	chr6	109726273	109726273	rs397801989	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	6q21	PPIL6	rs397801989-GA	0.327081	2E-12		0.017438386	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1422	chr6	109726273	109726273	rs397801989	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	6q21	PPIL6	rs397801989-GA	0.327086	6E-13		0.01774607	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1422	chr6	109736252	109736253	rs13195517	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	6q21	PPIL6	rs13195517-T	0.2998	2E-6		0.0064	[0.0037-0.0091] unit decrease	Affymetrix, Illumina [33811881] (imputed)	N
1422	chr6	109741529	109741530	rs61076041	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q21	NR	rs61076041-G	0.27773	1E-10				Affymetrix, Illumina [23472807] (imputed)	N
1422	chr6	109742014	109742015	rs9487094	18391951	Gudbjartsson DF	2008-04-06	Nat Genet	Many sequence variants affecting diversity of adult human height.	Height	30,968 European ancestry individuals	8,541 European ancestry individuals	6q21	PPIL6, SMPD2, MNICAL1, ZBTB24, CD164	rs9487094-G	0.69	4E-6		4.7	[2.74-6.66] % s.d. increase	Affymetrix, Illumina [up to 304226]	N
1422	chr6	109749754	109749756	rs200752500	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	6q21	PPIL6	rs200752500-A	0.299713	5E-11		0.017447745	[0.012-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1422	chr6	109749754	109749756	rs200752500	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6q21	PPIL6	rs200752500-A	0.299714	5E-18		0.02218709	[0.017-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1422	chr6	109765817	109765818	rs2236582	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	6q21	NR	rs2236582-G	0.332091	4E-11		0.012917	[0.0091-0.0167] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
1422	chr6	109774959	109774960	rs144411949	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean platelet volume	445,364 European ancestry individuals	NA	6q21		rs144411949-?	NR	5E-15		0.0967069	[0.07-0.124] unit increase	NR [9800000] (imputed)	N
1422	chr6	109779340	109779340	rs397771537	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6q21	MICAL1	rs397771537-G	0.6452	4E-7		0.0365	[0.022-0.051] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1422	chr6	109780173	109780174	rs9487113	30219690	Heinzman JT	2018-09-07	J Affect Disord	GWAS and systems biology analysis of depressive symptoms among smokers from the COPDGene cohort.	Depression in smokers	1,622 European ancestry cases, 391 African American cases, 4,954 European ancestry controls, 2,749 African American controls	NA	6q21	MICAL1	rs9487113-T	0.9391	3E-6	(AA)			Illumina [NR] (imputed)	N
1422	chr6	109781799	109781800	rs9487114	30219690	Heinzman JT	2018-09-07	J Affect Disord	GWAS and systems biology analysis of depressive symptoms among smokers from the COPDGene cohort.	Depression in smokers	1,622 European ancestry cases, 391 African American cases, 4,954 European ancestry controls, 2,749 African American controls	NA	6q21	ZBTB24	rs9487114-C	0.0635	3E-7	(AA)			Illumina [NR] (imputed)	N
1422	chr6	109783940	109783941	rs1046943	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	6q21	ZBTB24	rs1046943-A	0.58	3E-8		0.02	[NR] unit increase	Affymetrix, Illumina [2834208] (imputed)	N
1422	chr6	109795082	109795083	rs12203098	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	6q21		rs12203098-?	NR	1E-16				NR [~ 8900000] (imputed)	N
1422	chr6	109812137	109812138	rs1998811	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	6q21	NR	rs1998811-G	0.38607	2E-9		0.0422193	[0.029-0.056] unit decrease	Affymetrix [17914406] (imputed)	N
1422	chr6	109822280	109822281	rs79674254	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	6q21		rs79674254-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1422	chr6	109822280	109822281	rs79674254	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	6q21		rs79674254-?	NR	3E-15				NR [~ 8900000] (imputed)	N
1422	chr6	109824193	109824194	rs3056655	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	334,944 European ancestry, NR ancestry individuals	NA	6q21		rs3056655-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1423	chr6	109876185	109876186	rs35721210	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6q21	AK9	rs35721210-T	NR	2E-8		0.0248803	[0.016-0.034] unit decrease	Affymetrix [321016] (imputed)	N
1423	chr6	109879240	109879241	rs9384713	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA		NR	rs9384713-?	NR	1E-6				Affymetrix [NR]	N
1423	chr6	109929105	109929106	rs13205254	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in ever smokers	23,223 European ancestry cases,  16,964 European ancestry controls	NA	6q21	AK9	rs13205254-G	0.094784614	6E-6		1.141066	[1.077600055-1.208269739]	Illumina [10439017] (imputed)	N
1423	chr6	109956049	109956050	rs13201430	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	6q21	NR	rs13201430-T	0.393361	8E-10		0.0431224	[0.03-0.057] unit decrease	Affymetrix [17914406] (imputed)	N
1423	chr6	109965067	109965068	rs76782312	30219690	Heinzman JT	2018-09-07	J Affect Disord	GWAS and systems biology analysis of depressive symptoms among smokers from the COPDGene cohort.	Depression in smokers	1,622 European ancestry cases, 391 African American cases, 4,954 European ancestry controls, 2,749 African American controls	NA	6q21	AKD1	rs76782312-C	0.94	4E-7	(AA)			Illumina [NR] (imputed)	N
1424	chr6	110007646	110007647	rs9400317	19684573	Ge D	2009-08-16	Nature	Genetic variation in IL28B predicts hepatitis C treatment-induced viral clearance.	Response to hepatitis C treatment	871 European ancestry cases, 191 African American cases, 75 Hispanic cases	NA	6q21	AKD2	rs9400317-?	NR	7E-6	(combined)			Illumina [565759]	N
1424	chr6	110028075	110028076	rs56264193	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	6q21	FIG4	rs56264193-G	0.64512	2E-8		0.0121567	[0.0079-0.0164] unit increase	Affymetrix [NR] (imputed)	N
1424	chr6	110039153	110039154	rs6568600	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	6q21		rs6568600-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1424	chr6	110052514	110052515	rs4947015	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	6q21		rs4947015-?	NR	4E-30				NR [~ 8900000] (imputed)	N
1424	chr6	110058999	110059000	rs11964533	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	6q21	NR	rs11964533-A	NR	3E-18		0.0235	[0.018-0.029] unit decrease	Affymetrix [9000000] (imputed)	N
1424	chr6	110059039	110059040	rs79652026	30219690	Heinzman JT	2018-09-07	J Affect Disord	GWAS and systems biology analysis of depressive symptoms among smokers from the COPDGene cohort.	Depression in smokers	1,622 European ancestry cases, 391 African American cases, 4,954 European ancestry controls, 2,749 African American controls	NA	6q21	FIG4	rs79652026-C	0.9413	3E-6	(AA)			Illumina [NR] (imputed)	N
1424	chr6	110090048	110090049	rs4947019	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	6q21	FIG4	rs4947019-G	0.086147	2E-15		0.031682204	[0.024-0.039] unit increase	Affymetrix [93095623] (imputed)	N
1424	chr6	110090048	110090049	rs4947019	19820697	Soranzo N	2009-10-11	Nat Genet	A genome-wide meta-analysis identifies 22 loci associated with eight hematological parameters in the HaemGen consortium.	Hematological parameters	4,627 European ancestry individuals	9,316 European ancestry individuals	6q21	intergenic	rs4947019-G	NR	8E-6	(MCV)	0.01	[0.003-0.011] fl decrease	Affymetrix, Illumina [~ 2110000] (imputed)	N
1424	chr6	110090310	110090310	rs11419632	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	6q21	NR	rs11419632-CT	0.364982	4E-9		0.0430656	[0.029-0.057] unit decrease	Affymetrix [17914406] (imputed)	N
1424	chr6	110091063	110091064	rs13198879	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6q21	FIG4	rs13198879-C	NR	6E-9		0.0183024	[0.012-0.024] unit decrease	Affymetrix [321016] (imputed)	N
1424	chr6	110092899	110092900	rs13207150	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	6q21		rs13207150-C	0.313	1E-52		0.18	[-0.2--0.15] % decrease	Affymetrix [NR] (imputed)	N
1425	chr6	110101409	110101410	rs143130997	28334935	Raffield LM	2017-05-15	Hum Mol Genet	Genome-wide association study of iron traits and relation to diabetes in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL): potential genomic intersection of iron and glucose regulation?	Iron status biomarkers (transferrin saturation)	12,589 Hispanic/Latino individuals	NA	6q21	FIG4	rs143130997-G	NR	2E-7		0.379	[0.24-0.52] unit increase	Illumina [27700000] (imputed)	N
1425	chr6	110101409	110101410	rs143130997	28334935	Raffield LM	2017-05-15	Hum Mol Genet	Genome-wide association study of iron traits and relation to diabetes in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL): potential genomic intersection of iron and glucose regulation?	Iron status biomarkers (iron levels)	12,580 Hispanic/Latino individuals	NA	6q21	FIG4	rs143130997-G	NR	1E-6		0.587	[0.35-0.82] unit increase	Illumina [27700000] (imputed)	N
1425	chr6	110110553	110110554	rs9386845	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6q21	FIG4	rs9386845-A	0.1773	3E-6		0.0417	[0.024-0.059] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1425	chr6	110120266	110120267	rs4473902	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	6q21		rs4473902-?	NR	5E-16				NR [~ 8900000] (imputed)	N
1425	chr6	110162643	110162644	rs4631332	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6q21	GPR6	rs4631332-?	NR	6E-6	(TAG 48:0)	0.57418954	[0.33-0.82] unit increase	Affymetrix [at least 2500000] (imputed)	N
1425	chr6	110165960	110165961	rs114858855	28439531	Aslibekyan S	2017-03-08	J Nutr Intermed Metab	Genome- and CD4+ T-cell methylome-wide association study of circulating trimethylamine-N-oxide in the Genetics of Lipid Lowering Drugs and Diet Network (GOLDN).	Plasma trimethylamine N-oxide levels	626 European ancestry individuals	NA	6q21	intergenic	rs114858855-?	NR	3E-7		0.89	[0.56-1.22] unit decrease	Affymetrix [9432837] (imputed)	N
1425	chr6	110166663	110166664	rs143831173	28439531	Aslibekyan S	2017-03-08	J Nutr Intermed Metab	Genome- and CD4+ T-cell methylome-wide association study of circulating trimethylamine-N-oxide in the Genetics of Lipid Lowering Drugs and Diet Network (GOLDN).	Plasma trimethylamine N-oxide levels	626 European ancestry individuals	NA	6q21	intergenic	rs143831173-?	NR	3E-7		0.89	[0.56-1.22] uM decrease	Affymetrix [9432837] (imputed)	N
1425	chr6	110171900	110171901	rs138865076	28439531	Aslibekyan S	2017-03-08	J Nutr Intermed Metab	Genome- and CD4+ T-cell methylome-wide association study of circulating trimethylamine-N-oxide in the Genetics of Lipid Lowering Drugs and Diet Network (GOLDN).	Plasma trimethylamine N-oxide levels	626 European ancestry individuals	NA	6q21	intergenic	rs138865076-?	NR	4E-7		0.87	[0.54-1.20] unit decrease	Affymetrix [9432837] (imputed)	N
1425	chr6	110173393	110173394	rs58180025	28439531	Aslibekyan S	2017-03-08	J Nutr Intermed Metab	Genome- and CD4+ T-cell methylome-wide association study of circulating trimethylamine-N-oxide in the Genetics of Lipid Lowering Drugs and Diet Network (GOLDN).	Plasma trimethylamine N-oxide levels	626 European ancestry individuals	NA	6q21	intergenic	rs58180025-?	NR	3E-7		0.87	[0.54-1.20] unit decrease	Affymetrix [9432837] (imputed)	N
1425	chr6	110176789	110176790	rs12529570	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	6q21	NR	rs12529570-C	NR	4E-11		0.0195	[0.014-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
1425	chr6	110202341	110202342	rs9400338	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels	774 Chinese ancestry individuals	NA	6q21		rs9400338-?	NR	1E-5		0.21	[0.12-0.3] unit increase	Affymetrix [NR] (imputed)	N
1426	chr6	110232050	110232051	rs4557564	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	6q21		rs4557564-A	0.92961	2E-9		0.025	[0.017-0.033] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
1426	chr6	110243291	110243292	rs6910580	24939585	Fransen E	2014-06-18	Eur J Hum Genet	Genome-wide association analysis demonstrates the highly polygenic character of age-related hearing impairment.	Age-related hearing impairment	1,489 European ancestry individuals	NA	6q21	intergenic	rs6910580-?		5E-6	(PC1)	0.097	[NR] unit increase	Illumina [4167292] (imputed)	N
1426	chr6	110244764	110244765	rs60616179	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	6q21	FIG4, GPR6	rs60616179-A	0.9443	3E-10		1.0522177		Affymetrix [11880941] (imputed)	N
1426	chr6	110244764	110244765	rs60616179	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	6q21		rs60616179-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1426	chr6	110327683	110327684	rs6930781	29071344	Zhou H	2017-10-25	JAMA Psychiatry	Genetic Risk Variants Associated With Comorbid Alcohol Dependence and Major Depression.	Major depression and alcohol dependence	3,041 African American individuals, 1,618 European ancestry individuals	1,612 African American individuals, 1,551 European ancestry individuals	6q21	intergenic	rs6930781-C	0.514	3E-6	(AA)	0.46	unit increase	Illumina [at least 5086170] (imputed)	N
1427	chr6	110403039	110403040	rs146176865	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Systolic blood pressure (baseline)	5,304 African American individuals, 13,137 European ancestry individuals, 1,317 Hispanic individuals, 1,439 admixed individuals, 703 Chinese ancestry individuals	6,500 African American individuals, 2,451 European ancestry individuals, 2,869 Hispanic individuals	6q21	NR	rs146176865-A	0.0192	1E-7		5.0066	[3.15-6.86] mmHg increase	Affymetrix, Illumina [NR] (imputed)	N
1427	chr6	110403039	110403040	rs146176865	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Systolic blood pressure (baseline)	5,304 African American individuals	6,500 African American individuals	6q21	NR	rs146176865-A	0.0192	1E-7		5.0066	[3.15-6.86] mmHg increase	Affymetrix, Illumina [NR] (imputed)	N
1428	chr6	110509995	110509996	rs185855999	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein METTL24	5,363 Icelandic ancestry individuals	NA	6q21		rs185855999-A	0.01901	2E-14		0.517588	[0.39-0.65] unit decrease	Illumina [7506463] (imputed)	N
1428	chr6	110556562	110556563	rs56017032	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Perceived unattractiveness to mosquitoes	16,576 European ancestry individuals	NA	6q21	intergenic	rs56017032-G	NR	2E-6		0.290305	[0.17-0.41] unit increase	Illumina [7433384] (imputed)	N
1428	chr6	110567408	110567409	rs2334321	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein METTL24	5,363 Icelandic ancestry individuals	NA	6q21		rs2334321-A	0.09176	6E-16		0.257415	[0.2-0.32] unit decrease	Illumina [7506463] (imputed)	N
1428	chr6	110573291	110573292	rs12189608	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6q21	METTL24	rs12189608-A	0.95609375	7E-10	(METTL24, 9470_15_3)	0.37797758	[0.26-0.5] unit increase	Illumina [> 1000000] (imputed)	N
1429	chr6	110643955	110643956	rs6908306	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Daytime sleep phenotypes	874 European ancestry individuals	NA	6q21	METTL24, CDC40, DDO, SLC22A16	rs6908306-C	NR	3E-7	(daytime resting duration, weekdays)	0.1954	[0.12-0.27] unit decrease	Affymetrix [7141204] (imputed)	N
1429	chr6	110654065	110654066	rs9487381	33491795	Timmer T	2021-01-25	Vox Sang	Genetic determinants of ferritin, haemoglobin levels and haemoglobin trajectories: results from Donor InSight.	Hemoglobin levels	2,649 European ancestry individuals	NA	6q21	METTL24	rs9487381-C	0.028	6E-6		0.23	[0.13-0.32] unit increase	Affymetrix [7435577] (imputed)	N
1429	chr6	110655674	110655675	rs72935945	33445220	Li Y	2021-01-14	Am J Transplant	Donor genetic variants as risk factors for thrombosis after liver transplantation: A genome-wide association study.	Thrombosis in response to liver transplant	42 European ancestry pediatric cases, 268 European ancestry pediatric controls	64 European ancestry adult cases, 711 European ancestry adult controls	6q21	NR	rs72935945-T	0.1891	3E-6		2.2328	NR	Illumina [5393447] (imputed)	N
1429	chr6	110678108	110678109	rs7767851	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein METTL24	5,363 Icelandic ancestry individuals	NA	6q21		rs7767851-T	0.08681	1E-14		0.251327	[0.19-0.32] unit decrease	Illumina [7506463] (imputed)	N
1429	chr6	110701620	110701621	rs191420199	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Fibroblast growth factor basic levels	7,565 Finnish ancestry individuals	NA	6q21	NR	rs191420199-G		9E-6		0.9273	[0.51-1.35] SD units increase	NR [10700000] (imputed)	N
1429	chr6	110711024	110711025	rs6939019	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	6q21	DDO	rs6939019-A	0.504118	2E-26		0.024635224	[0.02-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
1429	chr6	110712990	110712991	rs9374170	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	6q21	DDO	rs9374170-G	0.442572	2E-12		0.021103282	[0.015-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1429	chr6	110713782	110713783	rs9400379	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	6q21	NR	rs9400379-G	0.445831	2E-24		0.018769	[0.015-0.022] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1429	chr6	110714583	110714584	rs2235989	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	6q21	DDO	rs2235989-T	0.4438	2E-14		0.02802144	[0.021-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
1429	chr6	110716135	110716136	rs9372253	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	6q21	DDO	rs9372253-T	0.4447	2E-55		0.05645892	[0.049-0.064] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1429	chr6	110717492	110717493	rs2057149	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	6q21		rs2057149-T	NR	3E-19		0.0189	[0.015-0.023] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1429	chr6	110717492	110717493	rs2057149	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	6q21	DDO	rs2057149-T	0.649418	7E-17		0.019619595	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1429	chr6	110717492	110717493	rs2057149	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	6q21	DDO	rs2057149-T	0.649422	8E-13		0.022347061	[0.016-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
1429	chr6	110717492	110717493	rs2057149	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q21	NR	rs2057149-T	0.686303	6E-24				Affymetrix, Illumina [24588908] (imputed)	N
1429	chr6	110717492	110717493	rs2057149	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q21	NR	rs2057149-C	0.343624	1E-64				Affymetrix, Illumina [17210439] (imputed)	N
1429	chr6	110717492	110717493	rs2057149	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	6q21	NR	rs2057149-C	0.350988	1E-64		0.034469	[0.03-0.038] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1429	chr6	110717492	110717493	rs2057149	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	6q21	DDO	rs2057149-T	0.6487	4E-53		0.05823069	[0.051-0.066] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1429	chr6	110717492	110717493	rs2057149	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	6q21	DDO	rs2057149-T	0.6487	8E-28		0.04178947	[0.034-0.049] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1429	chr6	110720208	110720209	rs1980532	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	6q21	DDO	rs1980532-G	0.447786	1E-117		0.053834297	[0.049-0.058] unit decrease	Affymetrix [93095623] (imputed)	N
1429	chr6	110721749	110721750	rs10447426	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6q21	NR	rs10447426-A	0.0428	3E-7		0.0153	[0.0094-0.0212] unit decrease	NR [7666894] (imputed)	N
1429	chr6	110732115	110732116	rs9398235	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	2,018 European ancestry cases, 6,925 European ancestry controls	6q21	DDO	rs9398235-A		1E-7		1.15	[1.09-1.21]	Illumina [644674]	N
1429	chr6	110734998	110734999	rs2011082	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	6q21		rs2011082-G	0.222	4E-10		0.08	[0.06-0.11] % increase	Affymetrix [NR] (imputed)	N
1429	chr6	110734998	110734999	rs2011082	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	6q21	DDO	rs2011082-T	0.776793	1E-17		0.0223855	[0.017-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1429	chr6	110734998	110734999	rs2011082	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	6q21	DDO	rs2011082-T	0.776774	7E-13		0.018750412	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1429	chr6	110734998	110734999	rs2011082	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	6q21		rs2011082-?	NR	4E-11				NR [~ 8900000] (imputed)	N
1429	chr6	110750551	110750552	rs9481067	29942513	Penney ME	2018-06-13	Biomark Res	Associations of single nucleotide polymorphisms with mucinous colorectal cancer: genome-wide common variant and gene-based rare variant analyses.	Mucinous adenocarcinoma in colorectal cancer	57 European ancestry cases, 448 European ancestry controls	NA	6q21	SLC22A16	rs9481067-G		1E-6	(univariable, recessive)	4.17	[2.33-7.43]	Illumina [729373]	N
1429	chr6	110751216	110751217	rs116822281	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,963 Sub-Saharan African ancestry females, 3,931 Sub-Saharan African ancestry males	NA	6q21		rs116822281-C	0.962484	1E-5		0.025827	[0.012-0.039] unit increase	Illumina [7666802] (imputed)	N
1430	chr6	110760007	110760008	rs12210538	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	6q21	SLC22A16	rs12210538-G	0.235981	5E-42		0.0355606	[0.03-0.041] unit increase	Affymetrix [93095623] (imputed)	N
1430	chr6	110760007	110760008	rs12210538	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	6q21	SLC22A16	rs12210538-G	0.235981	2E-47		0.037645742	[0.033-0.043] unit increase	Affymetrix [93095623] (imputed)	N
1430	chr6	110760007	110760008	rs12210538	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q21	NR	rs12210538-A	0.771099	9E-17				Affymetrix, Illumina [22063850] (imputed)	N
1430	chr6	110760007	110760008	rs12210538	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	6q21	SLC22A16	rs12210538-G	0.2371	8E-17		0.03513863	[0.027-0.043] unit increase	Affymetrix [~ 2500000] (imputed)	N
1430	chr6	110760007	110760008	rs12210538	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	6q21	SLC22A16	rs12210538-G	0.2371	2E-13		0.03112161	[0.023-0.039] unit increase	Affymetrix [~ 2500000] (imputed)	N
1430	chr6	110760007	110760008	rs12210538	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	6q21	SLC22A16	rs12210538-G	0.2371	1E-9		0.02550576	[0.017-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
1430	chr6	110760007	110760008	rs12210538	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	6q21	SLC22A16	rs12210538-G	0.2371	4E-17		0.03544612	[0.027-0.044] unit increase	Affymetrix [~ 2500000] (imputed)	N
1430	chr6	110760007	110760008	rs12210538	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	6q21	SLC22A16	rs12210538-G	0.2371	1E-14		0.03252877	[0.024-0.041] unit increase	Affymetrix [~ 2500000] (imputed)	N
1430	chr6	110760007	110760008	rs12210538	26401656	Burkhardt R	2015-09-24	PLoS Genet	Integration of Genome-Wide SNP Data and Gene-Expression Profiles Reveals Six Novel Loci and Regulatory Mechanisms for Amino Acids and Acylcarnitines in Whole Blood.	Blood metabolite levels	2,107 European ancestry individuals	923 Sorbian (founder/genetic isolate) individuals	6q21	SLC22A16, RPF2, DDO, CDC2L6, AMD1	rs12210538-?	NR	8E-29	(Acetylcarnitine)	0.11881469	[0.098-0.139] unit decrease	Affymetrix [2619023] (imputed)	N
1430	chr6	110760007	110760008	rs12210538	26401656	Burkhardt R	2015-09-24	PLoS Genet	Integration of Genome-Wide SNP Data and Gene-Expression Profiles Reveals Six Novel Loci and Regulatory Mechanisms for Amino Acids and Acylcarnitines in Whole Blood.	Blood metabolite levels	2,107 European ancestry individuals	923 Sorbian (founder/genetic isolate) individuals	6q21	SLC22A16, RPF2, DDO, CDC2L6, AMD1	rs12210538-?	NR	7E-37	(Acylcarnitine total)	0.104182996	[0.088-0.12] unit decrease	Affymetrix [2619023] (imputed)	N
1430	chr6	110760007	110760008	rs12210538	26401656	Burkhardt R	2015-09-24	PLoS Genet	Integration of Genome-Wide SNP Data and Gene-Expression Profiles Reveals Six Novel Loci and Regulatory Mechanisms for Amino Acids and Acylcarnitines in Whole Blood.	Blood metabolite levels	2,107 European ancestry individuals	923 Sorbian (founder/genetic isolate) individuals	6q21	SLC22A16, RPF2, DDO, CDC2L6, AMD1	rs12210538-?	NR	7E-31	(Palmitoylcarnitine)	0.09723939	[0.081-0.113] unit decrease	Affymetrix [2619023] (imputed)	N
1430	chr6	110760007	110760008	rs12210538	26401656	Burkhardt R	2015-09-24	PLoS Genet	Integration of Genome-Wide SNP Data and Gene-Expression Profiles Reveals Six Novel Loci and Regulatory Mechanisms for Amino Acids and Acylcarnitines in Whole Blood.	Blood metabolite levels	2,107 European ancestry individuals	923 Sorbian (founder/genetic isolate) individuals	6q21	SLC22A16, RPF2, DDO, CDC2L6, AMD1	rs12210538-?	NR	6E-25	(Carnitine free)	0.109467246	[0.089-0.13] unit decrease	Affymetrix [2619023] (imputed)	N
1430	chr6	110760007	110760008	rs12210538	26401656	Burkhardt R	2015-09-24	PLoS Genet	Integration of Genome-Wide SNP Data and Gene-Expression Profiles Reveals Six Novel Loci and Regulatory Mechanisms for Amino Acids and Acylcarnitines in Whole Blood.	Blood metabolite levels	2,107 European ancestry individuals	923 Sorbian (founder/genetic isolate) individuals	6q21	SLC22A16, RPF2, DDO, CDC2L6, AMD1	rs12210538-?	NR	5E-8	(Isovalerylcarnitine / Leucine|Isoleucine)	1.3692102E-4	[0.00009-0.00019] unit decrease	Affymetrix [2619023] (imputed)	N
1430	chr6	110760007	110760008	rs12210538	26401656	Burkhardt R	2015-09-24	PLoS Genet	Integration of Genome-Wide SNP Data and Gene-Expression Profiles Reveals Six Novel Loci and Regulatory Mechanisms for Amino Acids and Acylcarnitines in Whole Blood.	Blood metabolite levels	2,107 European ancestry individuals	923 Sorbian (founder/genetic isolate) individuals	6q21	SLC22A16, RPF2, DDO, CDC2L6, AMD1	rs12210538-?	NR	3E-25	(Propionylcarnitine)	0.12710622	[0.1-0.15] unit decrease	Affymetrix [2619023] (imputed)	N
1430	chr6	110760007	110760008	rs12210538	26401656	Burkhardt R	2015-09-24	PLoS Genet	Integration of Genome-Wide SNP Data and Gene-Expression Profiles Reveals Six Novel Loci and Regulatory Mechanisms for Amino Acids and Acylcarnitines in Whole Blood.	Blood metabolite levels	2,107 European ancestry individuals	923 Sorbian (founder/genetic isolate) individuals	6q21	SLC22A16, RPF2, DDO, CDC2L6, AMD1	rs12210538-?	NR	2E-26	(Leucine|Isoleucine / Propionylcarnitine)	0.15913461	[0.13-0.19] unit increase	Affymetrix [2619023] (imputed)	N
1430	chr6	110760007	110760008	rs12210538	26068415	Draisma HHM	2015-06-12	Nat Commun	Genome-wide association study identifies novel genetic variants contributing to variation in blood metabolite levels.	Acylcarnitine levels	up to 7,478 European ancestry individuals	1,182 European ancestry individuals	6q21	SLC22A16	rs12210538-A	0.808	5E-21	(Octadecadienylcarnitine)	0.086	[NR] unit increase	Affymetrix, Illumina [at least 296619] (imputed)	N
1430	chr6	110761188	110761189	rs13219760	25524916	Palmer ND	2014-12-18	Diabetes	Genetic Variants Associated With Quantitative Glucose Homeostasis Traits Translate to Type 2 Diabetes in Mexican Americans: The GUARDIAN (Genetics Underlying Diabetes in Hispanics) Consortium.	Glucose homeostasis traits	up to 4,176 Mexican American individuals	NA	6q21	SLC22A16	rs13219760-?	NR	3E-6	(MCRI)	0.35	[0.17-0.53] unit increase	Illumina [693128]	N
1430	chr6	110761614	110761615	rs150466745	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q21	NR	rs150466745-C	0.0421833	4E-11				Affymetrix, Illumina [20825802] (imputed)	N
1430	chr6	110762452	110762453	rs72939920	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	6q21		rs72939920-T	NR	2E-8		0.0154	[0.01-0.021] unit increase	Affymetrix, Illumina [20535842] (imputed)	N
1430	chr6	110762452	110762453	rs72939920	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	6q21		rs72939920-T	NR	5E-26		0.0287	[0.023-0.034] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
1430	chr6	110762452	110762453	rs72939920	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	6q21	SLC22A16	rs72939920-A	0.842016	8E-13	(oleoylcarnitine (C18:1))	0.223	[0.16-0.28] unit increase	Illumina [13039987] (imputed)	N
1430	chr6	110762452	110762453	rs72939920	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	6q21	SLC22A16	rs72939920-A	0.842016	2E-27	(linoleoylcarnitine (C18:2)*)	0.341	[0.28-0.4] unit increase	Illumina [13039987] (imputed)	N
1430	chr6	110762452	110762453	rs72939920	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6q21	SLC22A16	rs72939920-T	0.235324	2E-34		0.032150257	[0.027-0.037] unit increase	Affymetrix [93095623] (imputed)	N
1430	chr6	110762452	110762453	rs72939920	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	6q21	SLC22A16	rs72939920-T	0.235349	7E-17		0.021678431	[0.017-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1430	chr6	110762452	110762453	rs72939920	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	6q21	SLC22A16	rs72939920-T	0.235281	7E-24		0.026527382	[0.021-0.032] unit increase	Affymetrix [93095623] (imputed)	N
1430	chr6	110762452	110762453	rs72939920	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6q21	SLC22A16	rs72939920-T	0.235306	4E-41		0.035102535	[0.03-0.04] unit increase	Affymetrix [93095623] (imputed)	N
1430	chr6	110762452	110762453	rs72939920	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	6q21		rs72939920-?	NR	1E-14				NR [~ 8900000] (imputed)	N
1430	chr6	110763561	110763562	rs201904861	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Number of common colds	43,826 European ancestry cases, 15,720 European ancestry controls	NA	6q21	NR	rs201904861-?	NR	8E-6		0.1483	[0.083-0.213] unit increase	Illumina [at least 560000] (imputed)	N
1430	chr6	110776011	110776012	rs12194000	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite concentrations in chronic kidney disease	1,143 European ancestry cases	NA	6q21	SLC22A16	rs12194000-G	NR	3E-11	(Octadecadienoylcarnitine)	0.306187	[0.22-0.4] unit decrease	Illumina [up to 9281895] (imputed)	N
1430	chr6	110777825	110777826	rs199818592	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Melanoma	3,122 White British ancestry cases, 271,708 White British ancestry controls	NA	6q21		rs199818592-?	NR	3E-9		10.8566	[10.07-11.65]	NR [674885]	N
1430	chr6	110821914	110821915	rs2188553	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	6q21	NR	rs2188553-A	NR	4E-9		0.0179	[0.012-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
1430	chr6	110841258	110841259	rs6905381	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	6q21		rs6905381-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1430	chr6	110842549	110842550	rs9386909	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6q21		rs9386909-?	NR	3E-9		0.0122358	[0.0082-0.0163] unit increase	Affymetrix [20259828] (imputed)	N
1430	chr6	110851762	110851763	rs2817782	25387704	Malone SM	2014-12-01	Psychophysiology	Heritability and molecular-genetic basis of resting EEG activity: a genome-wide association study.	Electroencephalogram traits	2,383 European ancestry adolescents and 1,643 European ancestry adults from 1,613 families	NA	6q21	intergenic	rs2817782-?	NR	2E-6	(Alpha peak frequency, occipital	0.079	[0.048-0.11] unit increase	Illumina [527829]	N
1430	chr6	110851975	110851976	rs1080261	26584805	Dorajoo R	2015-11-19	Genes Nutr	A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.	Plasma omega-6 polyunsaturated fatty acid levels (arachidonic acid)	717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls	NA	6q21	NR	rs1080261-T	0.6972	7E-6		0.0436	[0.025-0.063] unit increase	Illumina [up to 1980188] (imputed)	N
1431	chr6	110946338	110946339	rs139429326	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	6q21	NR	rs139429326-?	NR	2E-6	(Japanese)	0.5905	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1431	chr6	110949759	110949760	rs113125045	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	6q21	NR	rs113125045-?	NR	3E-6		0.038792	[0.023-0.055] unit increase	Affymetrix [805426] (imputed)	N
1431	chr6	110965817	110965818	rs10457220	33717105	Donkel SJ	2021-02-24	Front Immunol	Common and Rare Variants Genetic Association Analysis of Circulating Neutrophil Extracellular Traps.	Myeloperoxidase-DNA complexes	5,590 European ancestry individuals	NA	6q21	CDK19	rs10457220-T		4E-6		0.19	[0.11-0.27] unit increase	Illumina [11789982] (imputed)	N
1431	chr6	111000184	111000185	rs9374194	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	6q21	CDK19	rs9374194-T	0.807	4E-9		0.0088	[0.0059-0.0117] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
1432	chr6	111137079	111137080	rs117178387	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	6q21	NR	rs117178387-?	NR	1E-6	(Japanese)	0.5797	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1433	chr6	111179399	111179399	rs556469092	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	6q21	NR	rs556469092-GT	0.252259	4E-11		0.00631714	[0.0044-0.0082] unit increase	Affymetrix [16582909] (imputed)	N
1433	chr6	111179399	111179399	rs556469092	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	6q21	NR	rs556469092-GT	0.252259	4E-10		0.00654578	[0.0044-0.0087] unit increase	Affymetrix [16582965] (imputed)	N
1433	chr6	111197337	111197338	rs118102869	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6q21		rs118102869-?	NR	5E-11				NR [~ 8900000] (imputed)	N
1433	chr6	111219994	111219995	rs146357324	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Tyrosine levels	114,913 European ancestry individuals	NA	6q21		rs146357324-T	0.991839	3E-8		0.127319	[0.082-0.173] unit increase	NR [11722792] (imputed)	N
1433	chr6	111224997	111224998	rs77184653	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Lymphocytic leukemia	852 European ancestry cases, 410,350 European ancestry controls	NA	6q21		rs77184653-C	0.051806	1E-7		1.5992323	NR	Affymetrix [7846216] (imputed)	N
1433	chr6	111248986	111248987	rs1704721	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	6q21		rs1704721-A	0.16	2E-8		5.61	z score increase	Affymetrix [9061022] (imputed)	N
1434	chr6	111408396	111408397	rs62421904	31560688	Geidenstam N	2019-09-27	PLoS One	Using metabolite profiling to construct and validate a metabolite risk score for predicting future weight gain.	Tyrosine levels	1,937 individuals	NA	6q21	SLC16A10	rs62421904-A	0.288	1E-7		0.2072	[0.13-0.28] unit increase	Affymetrix, Illumina [up to 22000000] (imputed)	N
1435	chr6	111414037	111414038	rs9386997	31006051	Kharazmi M	2019-04-20	Calcif Tissue Int	A Genome-Wide Association Study of Bisphosphonate-Associated Atypical Femoral Fracture.	Bisphosphonate-associated atypical femoral fracture	50 European ancestry cases, 1 Chilean ancestry case, 4,891 European ancestry controls	NA	6q21	SLC16A10	rs9386997-A	0.011	2E-6		7.389	[3.237-16.87]	Illumina [7585874] (imputed)	N
1435	chr6	111417958	111417959	rs1876905	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	6q21	SLC16A10	rs1876905-A	0.8573	5E-11		0.03368882	[0.024-0.044] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1435	chr6	111424014	111424015	rs9400467	26068415	Draisma HHM	2015-06-12	Nat Commun	Genome-wide association study identifies novel genetic variants contributing to variation in blood metabolite levels.	Amino acid levels	up to 7,478 European ancestry individuals	1,182 European ancestry individuals	6q21	SLC22A16, SLC16A10	rs9400467-T	0.7048	2E-10	(Tyrosine)	0.0297	[0.02-0.039] unit decrease	Affymetrix, Illumina [at least 296619] (imputed)	N
1435	chr6	111424014	111424015	rs9400467	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	6q21	SLC16A10	rs9400467-T	0.71	7E-14	(tyrosine)	0.012	[0.0081-0.0159] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
1435	chr6	111427285	111427286	rs1022092	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6q21	BXDC1	rs1022092-?	NR	5E-6	(tyrosine)	0.16349968	[0.093-0.234] unit increase	Affymetrix [at least 2500000] (imputed)	N
1435	chr6	111442504	111442505	rs4947107	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	6q21		rs4947107-T	NR	2E-10		0.0115	[0.008-0.015] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
1435	chr6	111458990	111458991	rs10457234	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	6q21	SLC16A10	rs10457234-C	0.863163	4E-34		0.0409045	[0.035-0.047] unit decrease	Affymetrix [93095623] (imputed)	N
1435	chr6	111458990	111458991	rs10457234	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	6q21		rs10457234-?	NR	4E-36				NR [~ 8900000] (imputed)	N
1435	chr6	111462756	111462757	rs6942055	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	6q21		rs6942055-C	NR	2E-8		0.0127	[0.0084-0.017] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
1435	chr6	111465144	111465145	rs7767302	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	6q21		rs7767302-T	0.663641	2E-8		0.0213202	[0.014-0.029] unit decrease	Illumina [13476266] (imputed)	N
1435	chr6	111488854	111488854	rs141072786	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	6q21	SLC16A10	rs141072786-GTG	0.157256	1E-9		0.0235183	[0.018-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
1435	chr6	111488854	111488854	rs141072786	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	6q21	SLC16A10	rs141072786-GTG	0.157223	2E-9		0.01806191	[0.012-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1435	chr6	111497378	111497379	rs395564	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	6q21	SLC16A10	rs395564-A	0.863641	3E-30		0.036814835	[0.031-0.043] unit decrease	Affymetrix [93095623] (imputed)	N
1435	chr6	111497898	111497899	rs111962067	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Tyrosine levels	114,913 European ancestry individuals	NA	6q21		rs111962067-C	0.98723	2E-69		0.320304	[0.28-0.36] unit decrease	NR [11722792] (imputed)	N
1435	chr6	111504488	111504489	rs354530	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q21	NR	rs354530-G	0.820775	9E-22				Affymetrix, Illumina [24332387] (imputed)	N
1435	chr6	111505270	111505271	rs354528	30552173	Aterido A	2018-12-14	Ann Rheum Dis	Genetic variation at the glycosaminoglycan metabolism pathway contributes to the risk of psoriatic arthritis but not psoriasis.	Psoriatic arthritis	744 Spanish ancestry cases, 1,454 Spanish ancestry controls	1,430 cases, 1,417 controls	6q21	NR	rs354528-?	NR	1E-7		5.26	[NR] z-score decrease	Illumina [1387382] (imputed)	N
1435	chr6	111509449	111509465	rs146358093	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	6q21	SLC16A10	rs146358093-T	0.12955	2E-30		0.03696663	[0.031-0.043] unit increase	Affymetrix [93095623] (imputed)	N
1435	chr6	111512211	111512212	rs13193227	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	6q21		rs13193227-?	NR	8E-15				NR [~ 8900000] (imputed)	N
1435	chr6	111517029	111517030	rs354540	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	6q21	NR	rs354540-G	0.861351	1E-51		0.041008	[0.036-0.046] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1435	chr6	111525382	111525383	rs434034	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q21	NR	rs434034-C	0.827477	6E-48				Affymetrix, Illumina [20825802] (imputed)	N
1435	chr6	111525535	111525536	rs1215848	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	6q21	NR	rs1215848-A	0.862419	2E-22		0.025998	[0.021-0.031] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
1435	chr6	111525535	111525536	rs1215848	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	6q21	NR	rs1215848-A	0.863671	3E-44		0.038741	[0.033-0.044] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
1435	chr6	111526444	111526445	rs17606253	31533690	Orlova E	2019-09-18	BMC Oral Health	Pilot GWAS of caries in African-Americans shows genetic heterogeneity.	Dental caries (decayed and filled deciduous tooth surfaces)	96 African American children	NA	6q21	TRAF3IP2	rs17606253-?		2E-6		12.19	[8.41-15.97] unit increase	Illumina [~ 4900000] (imputed)	N
1435	chr6	111527987	111527988	rs402940	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	6q21		rs402940-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1435	chr6	111529452	111529453	rs1234598	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	6q21	SLC16A10	rs1234598-T	0.8656	3E-12		0.03603858	[0.026-0.046] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1435	chr6	111530252	111530253	rs354543	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6q21	SLC16A10	rs354543-T	0.86422	4E-26		0.033681765	[0.027-0.04] unit decrease	Affymetrix [93095623] (imputed)	N
1435	chr6	111530252	111530253	rs354543	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q21	NR	rs354543-T	0.825164	6E-56				Affymetrix, Illumina [24246363] (imputed)	N
1435	chr6	111538386	111538387	rs12210707	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting tyrosine	4,734 individuals	NA	6q21		rs12210707-T	0.131465033	6E-15		0.237129	[0.18-0.3] mmol/l increase	Illumina [7701709] (imputed)	N
1435	chr6	111539760	111539761	rs369361	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	6q21	SLC16A10	rs369361-A	0.427807	7E-11	(tyrosine)	0.151	[0.11-0.2] unit increase	Illumina [13039987] (imputed)	N
1436	chr6	111543943	111543944	rs14399	27005778	Kettunen J	2016-03-23	Nat Commun	Genome-wide study for circulating metabolites identifies 62 loci and reveals novel systemic effects of LPA.	Metabolite levels (small molecules and protein measures)	2,118 Erasmus Rucphen (founder/genetic isolate), 22,807 European ancestry individuals	NA	6q21	SLC16A10	rs14399-A	0.39	1E-24	(Tyrosine)	0.1	[0.08-0.12] unit decrease	Affymetrix, Illumina, Perlegen [12133295] (imputed)	N
1436	chr6	111548812	111548813	rs354532	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	6q21	NR	rs354532-T	0.54	2E-8		0.0103	[0.0066-0.014] unit increase	NR [NR]	N
1436	chr6	111552753	111552754	rs3216008	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	6q21	RP11-428F8.2	rs3216008-T	0.105919	2E-9		0.021815235	[0.015-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1436	chr6	111554821	111554822	rs6901004	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	6q21	SLC16A10	rs6901004-C	0.57	1E-11	(tryptophan)	0.006	[0.004-0.008] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
1436	chr6	111556833	111556834	rs12206654	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Tyrosine levels	114,913 European ancestry individuals	NA	6q21		rs12206654-T	0.853385	5E-227		0.187362	[0.18-0.2] unit decrease	NR [11722792] (imputed)	N
1436	chr6	111565846	111565847	rs411604	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6q21	SLC16A10	rs411604-?	NR	1E-8	(tyrosine)	0.20388538	[0.13-0.27] unit increase	Affymetrix [at least 2500000] (imputed)	N
1436	chr6	111569023	111569024	rs17745202	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6q21	SLC16A10	rs17745202-?	NR	4E-6	(serotonin)	0.22175373	[0.13-0.32] unit increase	Affymetrix [at least 2500000] (imputed)	N
1436	chr6	111580153	111580154	rs17756732	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial tyrosine	4,348 individuals	NA	6q21		rs17756732-C	0.136490269	9E-13		0.224175	[0.16-0.29] mmol/l increase	Illumina [7701709] (imputed)	N
1436	chr6	111582884	111582885	rs9487605	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Inflammatory skin disease	2,079 European ancestry atopic dermatitis cases, 4,212 European ancestry psoriasis cases, 11,899 European ancestry controls	NA	6q21	KIAA1919	rs9487605-?	NR	1E-16	(Psoriasis)	1.27	[1.20-1.35]	Affymetrix, Illumina [~ 5200000]	N
1436	chr6	111587265	111587266	rs11153279	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	6q21	KIAA1919	rs11153279-C	0.71147	5E-16		0.019452788	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1436	chr6	111598057	111598058	rs12196873	26414677	Day FR	2015-11-01	Nat Genet	Large-scale genomic analyses link reproductive aging to hypothalamic signaling, breast cancer susceptibility and BRCA1-mediated DNA repair.	Menopause (age at onset)	up to 69,626 European ancestry women	NA	6q21	REV3L	rs12196873-A	0.85	3E-8		0.16	[0.1-0.22] years decrease	Affymetrix, Illumina [~ 2600000] (imputed)	N
1436	chr6	111620757	111620758	rs465646	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Smoking status (ever vs never smokers)	336,066 British ancestry individuals	NA	6q21	NR	rs465646-G	0.1588	8E-15		1.055	[1.04-1.07]	NR [8968716] (imputed)	N
1436	chr6	111626989	111626990	rs574056	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	6q21		rs574056-?	NR	2E-13				NR [~ 8900000] (imputed)	N
1436	chr6	111626989	111626990	rs574056	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	6q21	NR	rs574056-T	0.057863	3E-14		0.0501067	[0.037-0.063] unit increase	NR [19129689] (imputed)	N
1436	chr6	111644331	111644332	rs240963	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking initiation (ever regular vs never regular)	up to 433,216 European ancestry individuals	NA	6q21	REV3L	rs240963-C	0.841	2E-17		0.0265	[0.02-0.033] unit decrease	Illumina [~ 250000] (imputed)	N
1436	chr6	111644331	111644332	rs240963	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	6q21	NR	rs240963-C	0.837	4E-16		0.0160851	[0.012-0.02] unit increase	NR [9732723] (imputed)	N
1436	chr6	111655529	111655530	rs465969	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Psoriasis	4,212 European ancestry cases, 8,032 European ancestry controls	NA	6q21	REV3L	rs465969-A	NR	8E-12		1.403	[1.335-1.474]	Affymetrix, Illumina, Perlegen [up to 5493100] (imputed)	N
1436	chr6	111656097	111656098	rs17072594	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	6q21	NR	rs17072594-?	NR	9E-7				Affymetrix [NR]	N
1436	chr6	111658370	111658371	rs118202	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	6q21	NR	rs118202-T	0.812	2E-29		0.03674841	[0.03-0.043] unit decrease	NR [~ 10000000] (imputed)	N
1436	chr6	111660642	111660643	rs240955	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	6q21	REV3L	rs240955-A	0.813	4E-23		0.025524102	[0.02-0.031] unit decrease	Affymetrix [11514654] (imputed)	N
1437	chr6	111673713	111673714	rs240993	25903422	Yin X	2015-04-23	Nat Commun	Genome-wide meta-analysis identifies multiple novel associations and ethnic heterogeneity of psoriasis susceptibility.	Psoriasis	3,496 European ancestry cases, 5,186 European ancestry controls, 1,588 Chinese ancestry cases, 3,546 Chinese ancestry controls	5,134 European ancestry cases, 5,633 European ancestry controls, 5,151 Chinese ancestry cases, 5,152 Chinese ancestry controls	6q21	TRAF3IP2	rs240993-T	0.26876	9E-7		1.15	[1.09-1.22]	Illumina [up to 4778154] (imputed)	N
1437	chr6	111673713	111673714	rs240993	25903422	Yin X	2015-04-23	Nat Commun	Genome-wide meta-analysis identifies multiple novel associations and ethnic heterogeneity of psoriasis susceptibility.	Psoriasis	3,496 European ancestry cases, 5,186 European ancestry controls, 1,588 Chinese ancestry cases, 3,546 Chinese ancestry controls	5,134 European ancestry cases, 5,633 European ancestry controls, 5,151 Chinese ancestry cases, 5,152 Chinese ancestry controls	6q21	TRAF3IP2	rs240993-T	0.26876	1E-8	(EA)	1.2	[1.15-1.26]	Illumina [up to 4778154] (imputed)	N
1437	chr6	111673713	111673714	rs240993	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Psoriasis	4,212 European ancestry cases, 8,032 European ancestry controls	NA	6q21	TRAF3IP2	rs240993-T	NR	1E-14		1.282	[1.241-1.324]	Affymetrix, Illumina, Perlegen [up to 5493100] (imputed)	N
1437	chr6	111673713	111673714	rs240993	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Inflammatory skin disease	2,079 European ancestry atopic dermatitis cases, 4,212 European ancestry psoriasis cases, 11,899 European ancestry controls	NA	6q21	REV3L	rs240993-?	NR	6E-18	(Psoriasis)			Affymetrix, Illumina [~ 5200000]	N
1437	chr6	111673713	111673714	rs240993	20953190	Strange A	2010-10-17	Nat Genet	A genome-wide association study identifies new psoriasis susceptibility loci and an interaction between HLA-C and ERAP1.	Psoriasis	2,178 European ancestry cases, 5,175 European ancestry controls	3,174 European ancestry cases, 5,464 European ancestry controls	6q21	TRAF3IP2	rs240993-A	0.25	5E-20		1.25	[1.16-1.34]	Illumina [535475]	N
1437	chr6	111674349	111674350	rs17539875	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	6q21	REV3L	rs17539875-?	NR	5E-13	(Tyr)	0.06706843	NR unit increase	Illumina [609262]	N
1437	chr6	111674349	111674350	rs17539875	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	6q21	REV3L	rs17539875-?	NR	6E-9	(Tyr)	0.072946906	NR unit increase	Illumina [609262]	N
1437	chr6	111676027	111676028	rs458806	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	6q21		rs458806-C	0.178	1E-29		0.016	[0.014-0.018] unit increase	NR [NR] (imputed)	N
1437	chr6	111691522	111691523	rs455650	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking initiation	842,717 European ancestry individuals	NA	6q21	REV3L	rs455650-C		4E-18		1.04	[NR]	Affymetrix [up to 79000000] (imputed)	N
1437	chr6	111691522	111691523	rs455650	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	6q21	NR	rs455650-T	0.813	3E-36		0.0173613	[0.015-0.02] unit decrease	NR [9732723] (imputed)	N
1437	chr6	111695886	111695887	rs462779	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	6q21	REV3L	rs462779-A	0.8147	1E-11		0.02251373	[0.016-0.029] unit decrease	Affymetrix [~ 11515000] (imputed)	N
1437	chr6	111696090	111696091	rs458017	30552173	Aterido A	2018-12-14	Ann Rheum Dis	Genetic variation at the glycosaminoglycan metabolism pathway contributes to the risk of psoriatic arthritis but not psoriasis.	Psoriatic arthritis	744 Spanish ancestry cases, 1,454 Spanish ancestry controls	1,430 cases, 1,417 controls	6q21	NR	rs458017-?	NR	3E-11		6.66	[NR] z-score decrease	Illumina [1387382] (imputed)	N
1437	chr6	111696090	111696091	rs458017	20953190	Strange A	2010-10-17	Nat Genet	A genome-wide association study identifies new psoriasis susceptibility loci and an interaction between HLA-C and ERAP1.	Psoriasis	2,178 European ancestry cases, 5,175 European ancestry controls	3,174 European ancestry cases, 5,464 European ancestry controls	6q21	TRAF3IP2	rs458017-G	0.06	2E-16		1.37	[1.22-1.54]	Illumina [535475]	N
1437	chr6	111707820	111707821	rs7766610	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	6q21		rs7766610-C	0.183	2E-12		0.018	[0.012-0.024] unit increase	Affymetrix [up to 90000000] (imputed)	N
1437	chr6	111711232	111711232	rs11376056	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	6q21	NR	rs11376056-CG	NR	2E-9		0.0187	[0.013-0.025] unit increase	Affymetrix [9000000] (imputed)	N
1437	chr6	111716867	111716868	rs9487626	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	6q21		rs9487626-?	NR	1E-20				NR [~ 8900000] (imputed)	N
1437	chr6	111738792	111738793	rs55812705	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	6q21	NR	rs55812705-C	0.2509	7E-9		0.0305	[0.02-0.041] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
1437	chr6	111738792	111738793	rs55812705	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	6q21	NR	rs55812705-C	0.2379	1E-9		0.0301	[0.02-0.04] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1437	chr6	111747082	111747083	rs7760535	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	6q21		rs7760535-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1437	chr6	111747082	111747083	rs7760535	21886157	Suhre K	2011-08-31	Nature	Human metabolic individuality in biomedical and pharmaceutical research.	Metabolic traits	2,820 European ancestry individuals	NA	6q21	SLC16A10	rs7760535-G	0.401	1E-12	(isoleucine/tyrosine + 10 other traits)	0.035	[NR] unit decrease	Affymetrix, Illumina [534665]	N
1437	chr6	111794408	111794409	rs6900341	22286219	Kettunen J	2012-01-29	Nat Genet	Genome-wide association study identifies multiple loci influencing human serum metabolite levels.	Metabolite levels	8,330 European ancestry individuals	NA	6q21	SLC16A10	rs6900341-?	NR	4E-15	(Ala, Tyr)	0.13	[0.091-0.169] unit increase	Illumina [~ 7700000] (imputed)	N
1438	chr6	111819043	111819044	rs4947120	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	6q21	GTF3C6, SLC16A10, REV3L, TRAF3IP2	rs4947120-?		3E-10				Affymetrix, Illumina [NR] (imputed)	N
1438	chr6	111821112	111821113	rs6568685	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	6q21	NR	rs6568685-A	NR	7E-7		1.07	[NR]	Illumina [7158791] (imputed)	N
1438	chr6	111826300	111826301	rs3851227	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	6q21	NR	rs3851227-C	0.143051	8E-9		0.0256317	[0.017-0.034] unit decrease	NR [19129689] (imputed)	N
1438	chr6	111830361	111830362	rs75717807	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	6q21		rs75717807-G	NR	5E-6		3.9133	[2.27-5.55] unit increase	Illumina [NR] (imputed)	N
1438	chr6	111834953	111834954	rs4947121	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	6q21		rs4947121-C	NR	4E-8		0.0151	[0.0096-0.0206] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
1438	chr6	111834953	111834954	rs4947121	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	6q21	REV3L	rs4947121-T	0.226294	2E-8		0.0132564	[0.0086-0.0179] unit decrease	Affymetrix [NR] (imputed)	N
1438	chr6	111834953	111834954	rs4947121	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	6q21	REV3L	rs4947121-T	0.226407	5E-10		0.0141734	[0.0097-0.0186] unit increase	Affymetrix [NR] (imputed)	N
1438	chr6	111834953	111834954	rs4947121	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	6q21	TRAF3IP2	rs4947121-T	0.2276	3E-9		0.0142397415	[0.0095-0.0189] unit decrease	Affymetrix [11514654] (imputed)	N
1438	chr6	111848190	111848191	rs3851228	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Ulcerative colitis	12,366 European and unknown ancestry cases, 33,609 European and unknown ancestry controls	NA	6q21	KIAA1919, TRAF3IP2, SLC16A10, REV3L, FYN	rs3851228-?		6E-10				Illumina [9578670] (imputed)	N
1438	chr6	111848190	111848191	rs3851228	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	6q21	KIAA1919, TRAF3IP2, SLC16A10, REV3L, FYN	rs3851228-?		4E-10				Illumina [9725440] (imputed)	N
1438	chr6	111848190	111848191	rs3851228	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	6q21	NR	rs3851228-A	0.06375	1E-14	(EA)	1.2023339	[1.16-1.25]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1438	chr6	111848190	111848191	rs3851228	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	6q21	NR	rs3851228-A	0.06375	3E-8	(EA)	1.1365786	[1.09-1.18]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1438	chr6	111848190	111848191	rs3851228	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	6q21	TRAF3IP2, FYN, REV3L	rs3851228-T	0.073	1E-13		1.153	[1.089-1.219]	Affymetrix, Illumina [1230000] (imputed)	N
1438	chr6	111869023	111869024	rs9487666	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Esophageal varix	2,135 European ancestry cases, 434,019 European ancestry controls, 264 East Asian ancestry cases, 177,516 East Asian ancestry controls	NA	6q21		rs9487666-C	NR	1E-9		0.1796	[0.12-0.24] unit decrease	Affymetrix, Illumina [25840700] (imputed)	N
1438	chr6	111872481	111872482	rs6568686	26297903	Fabbri C	2015-08-20	Prog Neuropsychopharmacol Biol Psychiatry	Genetics of long-term treatment outcome in bipolar disorder.	Depressive episodes in bipolar disorder	723 European ancestry cases	NA	6q21	TRAF3IP2-AS1	rs6568686-?	NR	2E-6		0.08	[NR] unit increase	Affymetrix [329806] (imputed)	N
1438	chr6	111872481	111872482	rs6568686	26297903	Fabbri C	2015-08-20	Prog Neuropsychopharmacol Biol Psychiatry	Genetics of long-term treatment outcome in bipolar disorder.	Depressive and manic episodes in bipolar disorder	723 European ancestry cases	NA	6q21	TRAF3IP2-AS1	rs6568686-?	NR	4E-8		0.11	[NR] unit increase	Affymetrix [329806]	N
1438	chr6	111873651	111873652	rs3777908	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6q21		rs3777908-?	NR	4E-6		1.49669	[1.32-1.67]	NR [685523]	N
1438	chr6	111885751	111885752	rs2179070	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	6q21	NR	rs2179070-?	NR	9E-18	(EA)			Affymetrix, Illumina [~ 9000000] (imputed)	N
1438	chr6	111904527	111904528	rs174373	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	6q21	NR	rs174373-T	0.208202	1E-9		0.0159507	[0.011-0.021] unit increase	NR [NR]	N
1438	chr6	111913069	111913070	rs13190932	30552173	Aterido A	2018-12-14	Ann Rheum Dis	Genetic variation at the glycosaminoglycan metabolism pathway contributes to the risk of psoriatic arthritis but not psoriasis.	Psoriatic arthritis	744 Spanish ancestry cases, 1,454 Spanish ancestry controls	1,430 cases, 1,417 controls	6q21	NR	rs13190932-?	NR	1E-10		6.42	[NR] z-score increase	Illumina [1387382] (imputed)	N
1438	chr6	111913261	111913262	rs33980500	26626624	Stuart PE	2015-11-28	Am J Hum Genet	Genome-wide Association Analysis of Psoriatic Arthritis and Cutaneous Psoriasis Reveals Differences in Their Genetic Architecture.	Psoriatic arthritis	1,946 European ancestry cases, 4,934 European ancestry controls	up to 2,883 European ancestry cases, up to 14,179 European ancestry controls	6q21	TRAF3IP2	rs33980500-T	NR	1E-17		1.599	NR	Illumina [11532644] (imputed)	N
1438	chr6	111913261	111913262	rs33980500	26626624	Stuart PE	2015-11-28	Am J Hum Genet	Genome-wide Association Analysis of Psoriatic Arthritis and Cutaneous Psoriasis Reveals Differences in Their Genetic Architecture.	Psoriasis vulgaris	4,007 European ancestry cases, 4,934 European ancestry controls	up to 9,075 European ancestry cases, up to European ancestry 12,726 controls	6q21	TRAF3IP2	rs33980500-T	NR	1E-23		1.44	NR	Illumina [up to 11532644] (imputed)	N
1438	chr6	111913261	111913262	rs33980500	23143594	Tsoi LC	2012-12-01	Nat Genet	Identification of 15 new psoriasis susceptibility loci highlights the role of innate immunity.	Psoriasis	10,588 European ancestry cases, 22,806 European ancestry controls	NA	6q21	TRAF3IP2	rs33980500-T	0.074	4E-45		1.52		Illumina [111236] (imputed)	N
1438	chr6	111913261	111913262	rs33980500	20953188	Ellinghaus E	2010-10-17	Nat Genet	Genome-wide association study identifies a psoriasis susceptibility locus at TRAF3IP2.	Psoriasis	472 European ancestry cases, 1,146 European ancestry controls	2,668, European ancestry cases, 762 French Canadian founder population cases, 2,585 cases, 3,485 European ancestry controls, 994 French Canadian founder population controls, 2,412 controls	6q21	TRAF3IP2	rs33980500-T	0.08	1E-16				Illumina [2339118] (imputed)	N
1438	chr6	111913261	111913262	rs33980500	20953186	Huffmeier U	2010-10-17	Nat Genet	Common variants at TRAF3IP2 are associated with susceptibility to psoriatic arthritis and psoriasis.	Psoriatic arthritis	572 European ancestry cases, 888 European ancestry controls	Up to 1,761 European ancestry cases, 3,727 European ancestry controls	6q21	TRAF3IP2	rs33980500-T	0.07	1E-20		1.95	[1.69-2.24]	Affymetrix [1585307] (imputed)	N
1438	chr6	111918864	111918865	rs174393	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	6q21		rs174393-G	0.253	2E-10		0.009	[0.007-0.011] unit increase	NR [NR] (imputed)	N
1438	chr6	111924769	111924770	rs174401	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	6q21		rs174401-T	NR	1E-8		0.0147	[0.0096-0.0198] unit decrease	Affymetrix, Illumina [20529698] (imputed)	N
1438	chr6	111926908	111926909	rs7769061	25903422	Yin X	2015-04-23	Nat Commun	Genome-wide meta-analysis identifies multiple novel associations and ethnic heterogeneity of psoriasis susceptibility.	Psoriasis	3,496 European ancestry cases, 5,186 European ancestry controls, 1,588 Chinese ancestry cases, 3,546 Chinese ancestry controls	5,134 European ancestry cases, 5,633 European ancestry controls, 5,151 Chinese ancestry cases, 5,152 Chinese ancestry controls	6q21	TRAF3IP2	rs7769061-G	NR	3E-10	(EA)	1.54	[1.35-1.76]	Illumina [up to 4778154] (imputed)	N
1438	chr6	111929861	111929862	rs9481169	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Psoriasis vulgaris	5,072 European ancestry cases, 478,102 European ancestry controls, 206 East Asian ancestry cases, 172,289 East Asian ancestry controls	NA	6q21		rs9481169-T	NR	7E-12		0.256	[0.18-0.33] unit increase	Affymetrix, Illumina [25844455] (imputed)	N
1438	chr6	111929861	111929862	rs9481169	33385400	Patrick MT	2020-12-29	J Invest Dermatol	Causal relationship and shared genetic loci between psoriasis and type 2 diabetes through trans-disease meta-analysis.	Psoriasis or type 2 diabetes (trans-disease meta-analysis)(opposite effect)	11,024 European ancestry psoriasis cases, 74,124 European ancestry diabetes cases, 840,342 European ancestry controls	NA	6q21	NR	rs9481169-T		8E-24		1.18		NR [8016731] (imputed)	N
1438	chr6	111929861	111929862	rs9481169	33385400	Patrick MT	2020-12-29	J Invest Dermatol	Causal relationship and shared genetic loci between psoriasis and type 2 diabetes through trans-disease meta-analysis.	Psoriasis or type 2 diabetes (trans-disease meta-analysis)	11,024 European ancestry psoriasis cases, 74,124 European ancestry diabetes cases, 840,342 European ancestry controls	NA	6q21	NR	rs9481169-T	NR	1E-22		1.18	NR	NR [8016731] (imputed)	N
1438	chr6	111929861	111929862	rs9481169	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Inflammatory skin disease	2,079 European ancestry atopic dermatitis cases, 4,212 European ancestry psoriasis cases, 11,899 European ancestry controls	NA	6q21	TRAF3IP2	rs9481169-?	NR	1E-26	(Psoriasis)	1.58	[1.45-1.72]	Affymetrix, Illumina [~ 5200000]	N
1439	chr6	111940628	111940630	rs147346579	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-2 levels	3,475 Finnish ancestry individuals	NA	6q21	NR	rs147346579-GCA		8E-6		0.498	[0.28-0.72] SD units increase	NR [10700000] (imputed)	N
1439	chr6	111950648	111950649	rs11153306	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6q21	NR	rs11153306-?	NR	1E-6		0.0395	[0.024-0.055] unit increase	Illumina [at least 560000] (imputed)	N
1439	chr6	111965137	111965138	rs2344704	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		6q21	NR	rs2344704-A	NR	4E-8		0.0344008	NR unit increase	NR [NR] (imputed)	N
1439	chr6	111968787	111968788	rs1794818	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals	6q21		rs1794818-A	0.416579	3E-13		0.0625636	[0.044-0.081] decrease	Affymetrix [11014269] (imputed)	N
1439	chr6	111968787	111968788	rs1794818	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	6q21	TRAF3IP2, FYN	rs1794818-A	0.4168	7E-16		0.112	[0.084-0.14] unit decrease	Affymetrix [~ 11900000] (imputed)	N
1439	chr6	111971385	111971386	rs1726140	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	6q21	TRAF3IP2, FYN	rs1726140-C	0.3687	3E-13		0.103	[0.075-0.131] unit decrease	Affymetrix [~ 11900000] (imputed)	N
1439	chr6	111993746	111993747	rs77437330	28300201	Hernandez-Pacheco N	2017-03-16	Sci Rep	Identification of a novel locus associated with skin colour in African-admixed populations.	Skin pigmentation	285 Puerto Rican individuals	373 African American individuals	6q21	NR	rs77437330-A	NR	9E-6	(Hispanic)	4.45	[2.52-6.38] unit increase	Affymetrix [14000000] (imputed)	N
1439	chr6	112008024	112008025	rs804193	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	6q21		rs804193-?	NR	8E-16				NR [~ 8900000] (imputed)	N
1439	chr6	112008024	112008025	rs804193	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	6q21	NR	rs804193-T	0.0412422	4E-26		0.0825247	[0.067-0.098] unit increase	NR [19129689] (imputed)	N
1439	chr6	112009324	112009325	rs11153311	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	6q21	NR	rs11153311-G	0.121738	2E-19		0.0429624	[0.034-0.052] unit increase	NR [19129689] (imputed)	N
1439	chr6	112017434	112017435	rs28763977	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q21	FYN	rs28763977-C	0.868533	4E-9	(170 ms)	0.0484219	[0.032-0.065] unit decrease	Affymetrix [10000000] (imputed)	N
1439	chr6	112017434	112017435	rs28763977	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q21	FYN	rs28763977-C	0.868533	3E-8	(186 ms)	0.0454665	[0.029-0.062] unit decrease	Affymetrix [10000000] (imputed)	N
1439	chr6	112017434	112017435	rs28763977	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q21	FYN	rs28763977-C	0.868533	3E-8	(160 ms)	0.0450979	[0.029-0.061] unit decrease	Affymetrix [10000000] (imputed)	N
1439	chr6	112017434	112017435	rs28763977	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q21	FYN	rs28763977-C	0.868533	3E-8	(158 ms)	0.0454091	[0.029-0.061] unit decrease	Affymetrix [10000000] (imputed)	N
1439	chr6	112017434	112017435	rs28763977	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q21	FYN	rs28763977-C	0.868533	2E-8	(180 ms)	0.0467213	[0.031-0.063] unit decrease	Affymetrix [10000000] (imputed)	N
1439	chr6	112017434	112017435	rs28763977	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q21	FYN	rs28763977-C	0.868533	1E-10	(172 ms)	0.0528809	[0.037-0.069] unit decrease	Affymetrix [10000000] (imputed)	N
1439	chr6	112041631	112041632	rs118086828	31832568	Gawrieh S	2019-11-03	Hepatol Commun	A Pilot Genome-Wide Analysis Study Identifies Loci Associated With Response to Obeticholic Acid in Patients With NASH.	NASH resolution in nonalcoholic steatohepatitis	25 European ancestry cases, 116 European ancestry controls	NA	6q21	FYN	rs118086828-?	NR	9E-7				Illumina [5417859] (imputed)	N
1440	chr6	112087767	112087768	rs2012071	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	6q21	FYN	rs2012071-A	0.4827	4E-9		0.1575	[0.11-0.21] mmHg decrease	Affymetrix [NR] (imputed)	N
1440	chr6	112094337	112094338	rs6912975	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	6q21	NR	rs6912975-?	NR	9E-9				Illumina [7760689] (imputed)	N
1440	chr6	112098895	112098896	rs7758816	32581359	Saevarsdottir S	2020-06-24	Nature	FLT3 stop mutation increases FLT3 ligand level and risk of autoimmune thyroid disease.	Autoimmune thyroid disease	30,234 European ancestry cases, 724,172 European ancestry controls	NA	6q21	FYN	rs7758816-T	0.511	8E-10		1.0526316	[NR]	Affymetrix, Illumina [42900000] (imputed)	N
1440	chr6	112098895	112098896	rs7758816	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	6q21		rs7758816-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1440	chr6	112122225	112122226	rs2148710	24489884	Mick E	2014-01-01	PLoS One	Genome-wide association study of proneness to anger.	Anger	8,747 European ancestry individuals	NA	6q21	FYN	rs2148710-T	0.137	3E-8	(Temperament)	0.22	[NR] unit increase	Affymetrix [677643]	N
1440	chr6	112132031	112132032	rs7757969	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	6q21	FYN	rs7757969-C	NR	8E-9	(East Asian)	1.107	[1.07-1.14]	Illumina [6627481] (imputed)	N
1440	chr6	112132031	112132032	rs7757969	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	6q21	FYN	rs7757969-T	NR	5E-8	(Chinese)	1.11	[1.07-1.15]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1440	chr6	112151451	112151452	rs1887316	32310270	Foo JN	2020-04-20	JAMA Neurol	Identification of Risk Loci for Parkinson Disease in Asians and Comparison of Risk Between Asians and Europeans: A Genome-Wide Association Study.	Parkinson's disease	6,724 East Asian ancestry cases, 24,851 East Asian ancestry controls	57,545 European ancestry cases, 1,868,816 European ancestry controls, 988 Japanese ancestry cases, 2,521 Japanese ancestry controls	6q21	FYN	rs1887316-?	NR	3E-8				Illumina [5843213] (imputed)	N
1440	chr6	112155669	112155670	rs9387042	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	6q21	FYN	rs9387042-?	NR	9E-9		0.5445	[0.37-0.72] unit increase	Affymetrix [11100000] (imputed)	N
1440	chr6	112179637	112179638	rs17073012	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	6q21	FYN	rs17073012-G	0.14	3E-6		1.0755116		NR [9372253] (imputed)	N
1441	chr6	112239809	112239810	rs144339868	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	6q21	Intergenic	rs144339868-A	0.003	2E-6		0.486	NR unit increase	Illumina [NR] (imputed)	N
1441	chr6	112242252	112242253	rs943437	32201043	Smeland OB	2020-02-08	Biol Psychiatry	Genome-wide Association Analysis of Parkinson's Disease and Schizophrenia Reveals Shared Genetic Architecture and Identifies Novel Risk Loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	NA	6q21	FYN	rs943437-A		2E-7		0.1105	[0.069-0.152] unit increase	Illumina [NR]	N
1441	chr6	112242252	112242253	rs943437	28892059	Chang D	2017-09-11	Nat Genet	A meta-analysis of genome-wide association studies identifies 17 new Parkinson's disease risk loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	5,851 European ancestry cases, 5,866 European ancestry controls	6q21	NR	rs943437-A	NR	6E-8		1.0940919	[1.06-1.13]	Illumina [11933700] (imputed)	N
1441	chr6	112243290	112243291	rs997368	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	6q21	FYN	rs997368-A	0.8049	2E-9		0.0714	[0.048-0.095] unit increase	NR [7784415] (imputed)	N
1441	chr6	112263730	112263731	rs17754910	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	6q21	NR	rs17754910-?	NR	1E-8				Affymetrix [NR]	N
1441	chr6	112273496	112273497	rs58157605	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	6q21		rs58157605-A	NR	3E-9		0.0123	[0.0082-0.0164] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1441	chr6	112273496	112273497	rs58157605	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	6q21		rs58157605-A	0.304739	6E-9		0.0128486	[0.0085-0.0172] unit decrease	Illumina [13479295] (imputed)	N
1441	chr6	112275359	112275360	rs1327199	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	6q21	FYN, WISP3	rs1327199-?	NR	4E-8		0.01706247	[0.011-0.023] unit decrease	Illumina [27896057] (imputed)	N
1441	chr6	112286633	112286634	rs581708	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6q21	NR	rs581708-C	0.02613	1E-8	(CS)	0.1153	NR unit increase	Illumina [1671387] (imputed)	N
1442	chr6	112344736	112344737	rs73539559	31095341	Kerns SL	2019-05-16	J Natl Cancer Inst	Radiogenomics Consortium Genome-Wide Association Study Meta-analysis of Late Toxicity after Prostate Cancer Radiotherapy.	Toxicity response to radiotherapy in prostate cancer (hematuria) (time to event)	3,619 European ancestry individuals	538 Japanese ancestry individuals	6q21	NR	rs73539559-?	0.02	2E-7	(EA)	2.86	[1.93-4.26]	Affymetrix, Illumina [~ 6000000] (imputed)	N
1442	chr6	112451366	112451367	rs34752945	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6q21	LAMA4	rs34752945-T	NR	3E-9		0.0320019	[0.021-0.043] unit decrease	Affymetrix [321114] (imputed)	N
1442	chr6	112451366	112451367	rs34752945	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6q21	LAMA4	rs34752945-T	NR	2E-8		0.030094	[0.02-0.041] unit decrease	Affymetrix [321169] (imputed)	N
1443	chr6	112500495	112500496	rs6899453	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	6q21		rs6899453-?	NR	9E-8				NR [~ 8900000] (imputed)	N
1443	chr6	112504239	112504240	rs12192658	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	6q21	NR	rs12192658-A	0.1009	8E-8		0.0161	[0.01-0.022] unit decrease	NR [~ 27400000] (imputed)	N
1443	chr6	112518125	112518126	rs11153345	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6q21	LAMA4	rs11153345-A	NR	3E-8		0.0177126	[0.011-0.024] unit decrease	Affymetrix [319769] (imputed)	N
1443	chr6	112518125	112518126	rs11153345	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6q21	LAMA4	rs11153345-A	NR	4E-8		0.0175726	[0.011-0.024] unit decrease	Affymetrix [319769] (imputed)	N
1443	chr6	112518125	112518126	rs11153345	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6q21	LAMA4	rs11153345-A	NR	3E-8		0.0179475	[0.012-0.024] unit decrease	Affymetrix [321169] (imputed)	N
1443	chr6	112522851	112522852	rs11757455	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6q21	LAMA4	rs11757455-A	NR	1E-10		0.0361127	[0.025-0.047] unit decrease	Affymetrix [319769] (imputed)	N
1443	chr6	112522851	112522852	rs11757455	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6q21	LAMA4	rs11757455-A	NR	1E-10		0.0363026	[0.025-0.047] unit decrease	Affymetrix [319769] (imputed)	N
1443	chr6	112522851	112522852	rs11757455	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6q21	LAMA4	rs11757455-A	NR	2E-12		0.0400502	[0.029-0.051] unit decrease	Affymetrix [321114] (imputed)	N
1443	chr6	112522851	112522852	rs11757455	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6q21	LAMA4	rs11757455-A	NR	9E-12		0.0388984	[0.028-0.05] unit decrease	Affymetrix [321169] (imputed)	N
1443	chr6	112522851	112522852	rs11757455	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6q21	NR	rs11757455-?	NR	5E-8				Affymetrix [~ 8270000] (imputed)	N
1443	chr6	112590681	112590682	rs17680579	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	6q21	LAMA4	rs17680579-A	0.877	8E-7		1.08806	[1.05-1.12]	NR [9372253] (imputed)	N
1444	chr6	112661895	112661896	rs1539403	33585033	Hayashi S	2021-01-29	Biomed Rep	A genome-wide association study identifying the SNPs predictive of rapid joint destruction in patients with rheumatoid arthritis.	joint destruction in rheumatoid arthritis (rapid vs slow)	32 Japanese ancestry rapid joint destruction individuals, 208 Japanese ancestry slow joint destruction individuals	NA	6q21	LOC100128588, RFPL4B	rs1539403-?	NR	1E-6			NR	Illumina [up to 317503]	N
1445	chr6	112814498	112814499	rs1276529	30378284	Smajlagic D	2018-10-31	Brain Behav	Moderating effect of mode of delivery on the genetics of intelligence: Explorative genome-wide analyses in ALSPAC.	Verbal intelligence quotient (cesarean section interaction)	519 European ancestry child cases, 1,902 European ancestry child controls	NA	6q21	NR	rs1276529-G	NR	1E-6		2.04	[0.22-2.86] unit decrease	Illumina [2141747] (imputed)	N
1446	chr6	112941472	112941473	rs951646	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage colony stimulating factor levels	840 Finnish ancestry individuals	NA	6q21	NR	rs951646-T	NR	9E-6		0.1419	[0.079-0.205] SD units decrease	NR [10700000] (imputed)	N
1446	chr6	112961005	112961006	rs9374352	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Emotional recognition	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	6q21	intergenic	rs9374352-T	NR	8E-6		0.13760434	[0.085-0.191] unit increase	NR [> 6200000] (imputed)	N
1446	chr6	112969357	112969361	rs147546541	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference	1,254 whole genome sequenced European ancestry individuals, 3,074 whole genome sequenced individuals, 29,716 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 701 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,050 Mylopotamos (founder/genetic isolate) individuals, 883 Pomak (founder/genetic isolate) individuals	205,909 European ancestry individuals	6q21	RP1-159M24.1	rs147546541-A	0.002	6E-6		0.5755	[0.33-0.82] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1447	chr6	113102953	113102954	rs9387100	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage colony stimulating factor levels	840 Finnish ancestry individuals	NA	6q21	NR	rs9387100-C	NR	4E-6		0.1352	[0.078-0.192] SD units increase	NR [10700000] (imputed)	N
1448	chr6	113124300	113124301	rs6934970	24322204	Winham SJ	2013-12-10	Mol Psychiatry	Genome-wide association study of bipolar disorder accounting for effect of body mass index identifies a new risk allele in TCF7L2.	Bipolar disorder (body mass index interaction)	388 European ancestry cases, 1,020 European ancestry controls	NA	6q21	LOC100287612, MARCKS	rs6934970-?	NR	7E-6				NR [up to 8466825] (imputed)	N
1448	chr6	113134475	113134476	rs10782174	24322204	Winham SJ	2013-12-10	Mol Psychiatry	Genome-wide association study of bipolar disorder accounting for effect of body mass index identifies a new risk allele in TCF7L2.	Bipolar disorder (body mass index interaction)	388 European ancestry cases, 1,020 European ancestry controls	NA	6q21	NR	rs10782174-?	NR	2E-6				NR [up to 8466825] (imputed)	N
1448	chr6	113144783	113144784	rs10457252	25656473	de With SA	2015-02-05	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of lymphoblast cell viability after clozapine exposure.	Clozapine-induced cytotoxicity	90 European ancestry lymphoblast cell lines	NA	6q21	intergenic	rs10457252-?	NR	2E-8	(30x)			NR [2092490]	N
1448	chr6	113147960	113147961	rs1418269	31194736	Tiensuu H	2019-06-13	PLoS Genet	Risk of spontaneous preterm birth and fetal growth associates with fetal SLIT2.	Spontaneous preterm birth (preterm birth)	247 Finnish ancestry infant cases, 419 Finnish ancestry infant controls	NA	6q21		rs1418269-?	NR	8E-6		1.73	[1.34-2.22]	Illumina [6778521] (imputed)	N
1448	chr6	113149332	113149334	rs34514373	31194736	Tiensuu H	2019-06-13	PLoS Genet	Risk of spontaneous preterm birth and fetal growth associates with fetal SLIT2.	Gestational age at birth (child effect)	666 Finnish ancestry infants	NA	6q21	LOC105377949, LOC107986634	rs34514373-?	NR	4E-6		1.58	unit decrease	Illumina [6778521] (imputed)	N
1448	chr6	113160343	113160344	rs62421103	24322204	Winham SJ	2013-12-10	Mol Psychiatry	Genome-wide association study of bipolar disorder accounting for effect of body mass index identifies a new risk allele in TCF7L2.	Bipolar disorder (body mass index interaction)	388 European ancestry cases, 1,020 European ancestry controls	NA	6q21	NR	rs62421103-?	NR	4E-6				NR [up to 8466825] (imputed)	N
1448	chr6	113223693	113223694	rs13211851	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	6q21		rs13211851-T	0.25	3E-9		5.93	z score increase	Affymetrix [9061022] (imputed)	N
1448	chr6	113223693	113223694	rs13211851	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	6q21	NR	rs13211851-T	0.167	6E-9				NR [9056863] (imputed)	N
1448	chr6	113241430	113241431	rs9398325	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	6q21		rs9398325-C	0.2	4E-12		6.95	z score increase	Affymetrix [9061022] (imputed)	N
1448	chr6	113241430	113241431	rs9398325	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	6q21	NR	rs9398325-C	0.1698	2E-11				NR [9056863] (imputed)	N
1448	chr6	113241438	113241439	rs9374367	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	6q21		rs9374367-G	0.2	1E-13		7.39	z score increase	Affymetrix [9061022] (imputed)	N
1449	chr6	113250064	113250065	rs13211003	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6q21	LAMA4	rs13211003-?	NR	3E-6	(CE 22:6)	0.28800452	[0.17-0.41] unit increase	Affymetrix [at least 2500000] (imputed)	N
1449	chr6	113304902	113304903	rs2127965	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	6q21		rs2127965-?	NR	6E-20				NR [~ 8900000] (imputed)	N
1449	chr6	113369491	113369492	rs975658	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs975658-C	0.764208	4E-12		0.0705963	[0.05-0.092] decrease	Affymetrix [11014269] (imputed)	N
1449	chr6	113371061	113371061	rs148987276	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	6q21		rs148987276-?,rs148987276-?	NR	5E-8				NR [9705931] (imputed)	N
1449	chr6	113371061	113371061	rs148987276	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	6q21		rs148987276-?,rs148987276-?	NR	5E-8				NR [9705931] (imputed)	N
1449	chr6	113375846	113375856	rs141917145	29235454	Choquet H	2017-12-13	Nat Commun	A large multi-ethnic genome-wide association study identifies novel genetic loci for intraocular pressure.	Intraocular pressure	56,819 European ancestry individuals, 5,748 Hispanic/Latino individuals, 5,119 East Asian ancestry individuals, 2,070 African American individuals	37,930 European and Asian ancestry individuals	6q21	RFPL4B	rs141917145-?	NR	1E-8		0.08	[NR] unit increase	Affymetrix [at least 665000] (imputed)	N
1449	chr6	113376786	113376787	rs7749695	32528159	Choquet H	2020-06-11	Commun Biol	A multiethnic genome-wide analysis of 44,039 individuals identifies 41 new loci associated with central corneal thickness.	Central corneal thickness	32,292 European ancestry individuals, 9,623 East Asian ancestry individuals, 1,367 Hispanic/Latino individuals, 757 African American  individuals	NA	6q21	RFPL4B	rs7749695-?	NA	3E-8		1.48	[0.95-2.01] unit increase	Affymetrix [5541230] (imputed)	N
1450	chr6	113386274	113386275	rs80002621	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	6q21		rs80002621-A	0.37239	1E-14		0.017774422	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1450	chr6	113386677	113386678	rs2347729	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	6q21		rs2347729-T	NR	5E-8		0.0143	[0.0092-0.0194] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1450	chr6	113386677	113386678	rs2347729	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q21	NR	rs2347729-T	0.177799	5E-22				Affymetrix, Illumina [24588908] (imputed)	N
1450	chr6	113387067	113387068	rs12214623	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	6q21		rs12214623-T	NR	4E-8		0.0153	[0.0098-0.0208] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
1450	chr6	113387067	113387068	rs12214623	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6q21		rs12214623-T	0.199502	2E-10		0.017492076	[0.012-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1450	chr6	113387067	113387068	rs12214623	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	6q21	NR	rs12214623-T	0.201879	2E-24		0.023245	[0.019-0.028] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1450	chr6	113387067	113387068	rs12214623	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q21	NR	rs12214623-T	0.187118	7E-13				Affymetrix, Illumina [23472807] (imputed)	N
1450	chr6	113387067	113387068	rs12214623	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	6q21	NR	rs12214623-T	0.201119	2E-15		0.018765	[0.014-0.023] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1450	chr6	113408595	113408599	rs137916697	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	6q21		rs137916697-T	0.198154	1E-15		0.02253412	[0.017-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
1450	chr6	113408595	113408599	rs137916697	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	6q21		rs137916697-T	0.198151	2E-14		0.02165709	[0.016-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1450	chr6	113410452	113410453	rs6420694	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6q21		rs6420694-A	0.617173	2E-24		0.022948408	[0.019-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1450	chr6	113410452	113410453	rs6420694	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	6q21		rs6420694-A	0.617059	2E-12		0.0144521	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
1450	chr6	113413976	113413977	rs7738702	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	6q21	NR	rs7738702-T	0.200365	3E-10		0.014438	[0.0099-0.0189] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1450	chr6	113443138	113443139	rs961755	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	35,422 individuals (>=25 years old)	NA	6q21		rs961755-T	NR	3E-6		0.0115	[0.0068-0.0162] mm increase	Affymetrix, Illumina [8936601] (imputed)	N
1450	chr6	113443138	113443139	rs961755	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	29,580 European ancestry individuals, 14,462 Asian ancestry individuals	88,218 European ancestry individuals	6q21		rs961755-T	0.18	1E-30		0.014	mm increase	Affymetrix, Illumina [8936601] (imputed)	N
1450	chr6	113459412	113459413	rs2502399	26545630	Deming Y	2015-09-25	Neurobiol Aging	A potential endophenotype for Alzheimer's disease: cerebrospinal fluid clusterin.	Plasma clusterin levels	521 Alzheimer's disease cases, 297 controls	NA	6q21	LOC102724704	rs2502399-?		5E-6				Illumina [5970354] (imputed)	N
1450	chr6	113479334	113479335	rs2473967	23829686	Ding L	2013-07-05	Hum Genomics	Rank-based genome-wide analysis reveals the association of ryanodine receptor-2 gene variants with childhood asthma among human populations.	Asthma (childhood onset)	429 European ancestry affected offspring trios	52 African American affected offspring trios, 46 Hispanic affected offspring trios	6q21	intergenic	rs2473967-?	NR	2E-6				Affymetrix [786195]	N
1450	chr6	113504553	113504554	rs2502372	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	6q21		rs2502372-G	NR	4E-8		0.0109	[0.007-0.0148] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
1450	chr6	113507710	113507710	rs376814364	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	6q21	NR	rs376814364-D	0.456488	2E-10		0.013206	[0.0091-0.0173] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1451	chr6	113508901	113508902	rs9400598	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	6q21		rs9400598-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1451	chr6	113537861	113537862	rs9372355	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	6q21		rs9372355-A	0.349	1E-8		0.007	[0.005-0.009] unit increase	NR [NR] (imputed)	N
1451	chr6	113567115	113567116	rs72942431	32469969	Pott J	2020-05-29	PLoS One	Genome-wide analysis of carotid plaque burden suggests a role of IL5 in men.	Mean degree of stenosis	727 European ancestry men, 550 European ancestry women	NA	6q21	SOCS5P5, FCF1P10	rs72942431-A	0.299552	2E-7		0.123706	[0.077-0.17] % decrease	Affymetrix [532676] (imputed)	N
1451	chr6	113567115	113567116	rs72942431	32469969	Pott J	2020-05-29	PLoS One	Genome-wide analysis of carotid plaque burden suggests a role of IL5 in men.	Mean area of carotid plaque	727 European ancestry men, 550 European ancestry women	NA	6q21	SOCS5P5, FCF1P10	rs72942431-A	0.299552	2E-6		0.107466	[0.063-0.152] mm2 decrease	Affymetrix [532676] (imputed)	N
1451	chr6	113567115	113567116	rs72942431	32469969	Pott J	2020-05-29	PLoS One	Genome-wide analysis of carotid plaque burden suggests a role of IL5 in men.	Maximum stenosis	727 European ancestry men, 550 European ancestry women	NA	6q21	SOCS5P5, FCF1P10	rs72942431-A	0.299552	9E-8		0.155985	[0.099-0.213] % decrease	Affymetrix [532676] (imputed)	N
1451	chr6	113567115	113567116	rs72942431	32469969	Pott J	2020-05-29	PLoS One	Genome-wide analysis of carotid plaque burden suggests a role of IL5 in men.	Carotid plaque maximum area	727 European ancestry men, 550 European ancestry women	NA	6q21	SOCS5P5, FCF1P10	rs72942431-A	0.299552	8E-6		0.128434	[0.072-0.184] mm2 decrease	Affymetrix [532676] (imputed)	N
1451	chr6	113626890	113626891	rs77966982	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Trunk fat mass	3,399 whole genome sequenced individuals, 12,838 European ancestry individuals	10,667 European ancestry individuals	6q21	RP11-437J19.1	rs77966982-A	0.0682	7E-6		0.1117	[0.063-0.16] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1451	chr6	113638354	113638355	rs11753543	30120429	Schlauch KA	2018-08-17	Int J Obes (Lond)	Single-nucleotide polymorphisms in a cohort of significantly obese women without cardiometabolic diseases.	Obesity without metabolic disease	38 European ancestry cases, 32 European ancestry non-obese controls	NA	6q21		rs11753543-?	NR	9E-6		3.3840287		Affymetrix [710007]	N
1452	chr6	113641220	113641221	rs9942436	26584805	Dorajoo R	2015-11-19	Genes Nutr	A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.	Plasma omega-6 polyunsaturated fatty acid levels (arachidonic acid)	717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls	NA	6q21	NR	rs9942436-T	0.3643	8E-6		0.0412	[0.023-0.059] unit decrease	Illumina [up to 1980188] (imputed)	N
1452	chr6	113644567	113644568	rs9384860	30120429	Schlauch KA	2018-08-17	Int J Obes (Lond)	Single-nucleotide polymorphisms in a cohort of significantly obese women without cardiometabolic diseases.	Obesity without metabolic disease	38 European ancestry cases, 32 European ancestry non-obese controls	NA	6q21		rs9384860-?	NR	9E-6		1.6424927		Affymetrix [710007]	N
1452	chr6	113645874	113645875	rs2637523	26584805	Dorajoo R	2015-11-19	Genes Nutr	A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.	Plasma omega-6 polyunsaturated fatty acid levels (arachidonic acid)	717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls	NA	6q21	NR	rs2637523-T	0.3619	8E-6		0.0415	[0.023-0.06] unit decrease	Illumina [up to 1980188] (imputed)	N
1452	chr6	113654796	113654797	rs62421504	30276832	Edwards AC	2018-10-01	Alcohol Clin Exp Res	Meta-Analysis of Genetic Influences on Initial Alcohol Sensitivity.	Initial alcohol sensitivity	6,039 European ancestry individuals, 892 African ancestry individuals, 408 American ancestry individuals	NA	6q21	ENSG00000223811	rs62421504-?	NR	5E-6				Affymetrix, Illumina [15642250] (imputed)	N
1452	chr6	113665326	113665327	rs7765175	23870195	Wojczynski MK	2013-07-19	BMC Med Genet	Genetics of coronary artery calcification among African Americans, a meta-analysis.	Coronary artery calcification	5,823 African American individuals	9,992 European ancestry individuals	6q21	LOC100652953	rs7765175-T	0.14	5E-6	(AA)	0.21	[0.11-0.31] unit decrease	Affymetrix, Illumina [up to 2727966] (imputed)	N
1452	chr6	113720238	113720239	rs11961710	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	6q21	Intergenic	rs11961710-A	NR	7E-7	(between families)	4.95	unit increase	Affymetrix [up to 15107142] (imputed)	N
1452	chr6	113726603	113726604	rs1009404	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6q21		rs1009404-?	NR	9E-9				NR [~ 8900000] (imputed)	N
1452	chr6	113754403	113754404	rs2294231	33290381	Li W	2020-12-07	Psychiatr Genet	The influence of regression models on genome-wide association studies of alcohol dependence: a comparison of binary and quantitative analyses.	Alcohol dependence	739 European ancestry cases, 1,251 European ancestry controls	NA	6q21	MARCKS	rs2294231-T	0.58	6E-6	(model 1)	0.33	[0.19-0.47] unit decrease	Illumina [2100000] (imputed)	N
1453	chr6	113848823	113848824	rs35515683	34337005	Duan H	2021-07-17	Biomed Res Int	A Genome-Wide Association Study of Age-Related Hearing Impairment in Middle- and Old-Aged Chinese Twins.	Hearing function (4 kHz)	131 Chinese ancestry dizygotic twin pairs	NA	6q21		rs35515683-?	NR	5E-6				Illumina [1365315]	N
1453	chr6	113897214	113897215	rs7770825	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6q21	HDAC2	rs7770825-?	NR	3E-6	(lactate)	0.21781698	[0.13-0.31] unit increase	Affymetrix [at least 2500000] (imputed)	N
1454	chr6	113908048	113908049	rs149358103	25760438	Anderson D	2015-03-11	PLoS One	First genome-wide association study in an Australian aboriginal population provides insights into genetic risk factors for body mass index and type 2 diabetes.	Type 2 diabetes	89 Martu Australian Aboriginal ancestry cases, 302 Martu Australian Aboriginal ancestry controls	NA	6q21	SOCS5P5, MARCKS	rs149358103-?	NR	5E-6		0.58	[0.33-0.83] unit increase	Illumina [1075436] (imputed)	N
1454	chr6	113952265	113952266	rs6941322	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota relative abundance (bacterial taxa)	up to 858 Metropolitan French ancestry individuals	NA	6q21	NR	rs6941322-?	NR	3E-8	(Deltaproteobacteria)	0.168279	[0.11-0.23] unit increase	Illumina [5293637] (imputed)	N
1454	chr6	113964226	113964227	rs2044278	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		LINC02541	rs2044278-?	NR	2E-8		0.805986	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1454	chr6	113969386	113969387	rs1962666	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	6q21	NR	rs1962666-T	0.634182	1E-20		0.018092	[0.014-0.022] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1454	chr6	113969607	113969608	rs1970365	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q21	NR	rs1970365-C	0.287699	1E-17				Affymetrix, Illumina [23467995] (imputed)	N
1454	chr6	113973846	113973847	rs56313227	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	6q21	LOC101927686	rs56313227-C	0.8139	5E-9		0.5012	[0.33-0.67] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1454	chr6	113975117	113975118	rs9384878	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	6q21		rs9384878-T	NR	2E-8		0.0108	[0.0071-0.0145] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1454	chr6	113977474	113977475	rs13218163	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6q21	HDAC2	rs13218163-?	NR	9E-6	(alpha ketoglutarate)	0.18604778	[0.1-0.27] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1454	chr6	113978254	113978255	rs111739590	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	6q21	LOC101927686	rs111739590-C	0.81	2E-9		0.5	[0.34-0.66] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1454	chr6	114017132	114017133	rs9488238	22993228	Williams FM	2012-09-19	Ann Rheum Dis	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NA	6q21	intergenic	rs9488238-A	0.04	5E-6		0.28	[0.16-0.40] unit decrease	Affymetrix, Illumina [2552511] (imputed)	N
1455	chr6	114033025	114033026	rs114464971	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	6q21		rs114464971-A	NR	2E-13		0.0301	[0.022-0.038] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
1455	chr6	114039708	114039709	rs2695458	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	6q21		rs2695458-C	0.198152	5E-11		0.01837595	[0.013-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1455	chr6	114039708	114039709	rs2695458	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	6q21		rs2695458-C	0.198118	4E-11		0.018450594	[0.013-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1455	chr6	114064673	114064674	rs7756389	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	6q21	NR	rs7756389-A	0.48	2E-6	(Japanese, Male)	0.023	[0.013-0.033] unit decrease	Illumina [6108953] (imputed)	N
1455	chr6	114071719	114071720	rs7765004	26460308	Ghesquieres H	2015-10-12	J Clin Oncol	Genome-Wide Association Study of Event-Free Survival in Diffuse Large B-Cell Lymphoma Treated With Immunochemotherapy.	Event free survival in diffuse large B-cell lymphoma treated with immunochemotherapy	852 European ancestry cases	685 European ancestry cases	6q21	LOC100652953, MARCKS, HDAC2	rs7765004-C	0.33	7E-7		1.38	[1.22-1.57]	Illumina [> 552942] (imputed)	N
1455	chr6	114094844	114094848	rs148808672	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	6q21		rs148808672-C	0.060233	4E-14		0.035651624	[0.026-0.045] unit increase	Affymetrix [93095623] (imputed)	N
1455	chr6	114094844	114094848	rs148808672	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	6q21		rs148808672-C	0.060246	4E-15		0.036979057	[0.028-0.046] unit increase	Affymetrix [93095623] (imputed)	N
1455	chr6	114149334	114149335	rs13193860	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	6q21	LOC101927686	rs13193860-A	NR	1E-6		1.0665529	NR	Affymetrix, Illumina [8278136] (imputed)	N
1455	chr6	114159920	114159921	rs2753884	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	6q21		rs2753884-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1456	chr6	114184247	114184248	rs28558559	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	6q21	MARCKS	rs28558559-C	0.1066	1E-9		0.019359034	[0.013-0.026] unit increase	Affymetrix [up to 18485882] (imputed)	N
1456	chr6	114184247	114184248	rs28558559	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income	286,301 British ancestry individuals	NA	6q21	MARCKS	rs28558559-C	NR	4E-8		0.011223	[0.0072-0.0152] unit increase	Affymetrix [18485882] (imputed)	N
1456	chr6	114213279	114213280	rs2615510	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6q21		rs2615510-T	0.115	1E-12	(conditional-joint)	0.0157	[0.011-0.02] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1456	chr6	114218607	114218608	rs117005905	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	6q21	Intergenic	rs117005905-T	0.1212	2E-8	(MTAG)	0.0143	[0.0094-0.0192] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1456	chr6	114218607	114218608	rs117005905	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6q21		rs117005905-T	0.1143	9E-12		0.015	[0.011-0.019] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1456	chr6	114218607	114218608	rs117005905	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6q21	Intergenic	rs117005905-T	0.1143	7E-12	(MTAG)	0.0141	[0.01-0.0182] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1456	chr6	114226539	114226540	rs17075682	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6q21		rs17075682-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1456	chr6	114228699	114228700	rs490393	31095341	Kerns SL	2019-05-16	J Natl Cancer Inst	Radiogenomics Consortium Genome-Wide Association Study Meta-analysis of Late Toxicity after Prostate Cancer Radiotherapy.	Toxicity response to radiotherapy in prostate cancer (hematuria) (time to event)	3,619 European ancestry individuals	538 Japanese ancestry individuals	6q21	NR	rs490393-?	0.03	2E-7	(EA)	2.96	[1.96-4.47]	Affymetrix, Illumina [~ 6000000] (imputed)	N
1457	chr6	114340013	114340014	rs150239481	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	CD40 ligand levels	21,758 European ancestry individuals	9,173 individuals	6q21		rs150239481-A	0.9962	8E-7		0.742	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1458	chr6	114492110	114492111	rs11153469	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Iritis	2,616 European ancestry cases, 478,126 European ancestry controls, 110 East Asian ancestry cases, 175,543 East Asian ancestry controls	NA	6q21		rs11153469-G	NR	2E-8		0.2095	[0.14-0.28] unit increase	Affymetrix, Illumina [25844196] (imputed)	N
1458	chr6	114547980	114547981	rs9488343	24086445	Wang Q	2013-09-24	PLoS One	Genome-wide association analysis with gray matter volume as a quantitative phenotype in first-episode treatment-naive patients with schizophrenia.	Gray matter volume (schizophrenia interaction)	74 Han Chinese ancestry cases, 51 Han Chinese ancestry controls	NA	6q22.1	HS3ST5	rs9488343-?	NR	7E-7		0.0437	[NR] unit increase	NR [1983054] (imputed)	N
1459	chr6	114591985	114591986	rs9488363	20395239	Macgregor S	2010-04-15	Hum Mol Genet	Genome-wide association identifies ATOH7 as a major gene determining human optic disc size.	Optic nerve measurement (rim area)	1,368 European ancestry twins from 666 families	848 European ancestry twins from 531 families	6q22.1	hCG_1820801	rs9488363-G	NR	2E-6		0.147	[0.065-0.229] unit decrease	Illumina [~ 2740000] (imputed)	N
1459	chr6	114607917	114607918	rs11153476	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	6q22.1	NR	rs11153476-T	0.308	4E-8		0.00659038	[0.0042-0.0089] unit decrease	NR [9732723] (imputed)	N
1459	chr6	114638966	114638966	rs35127490	33568662	Dashti HS	2021-02-10	Nat Commun	Genetic determinants of daytime napping and effects on cardiometabolic health.	Daytime nap	452,633 European ancestry individuals	541,333 European ancestry individuals	6q22.1	HS3ST5	rs35127490-CG		5E-11		0.0056	[0.0038-0.0074] unit increase	Affymetrix [13304133] (imputed)	N
1460	chr6	114696789	114696790	rs1337332	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	6q22.1	HS3ST5	rs1337332-C	0.569	7E-6	(EA, men)	0.022	[0.013-0.032] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1460	chr6	114711094	114711095	rs9384900	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	6q22.1	DNAJA1P4	rs9384900-T	NR	7E-7		1.058	[1.04-1.08]	Illumina [6627481] (imputed)	N
1460	chr6	114711094	114711095	rs9384900	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	6q22.1	DNAJA1P4	rs9384900-T	NR	4E-6	(EA)	1.0576	[1.03-1.08]	Illumina [6627481] (imputed)	N
1460	chr6	114711094	114711095	rs9384900	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	6q22.1	intergenic	rs9384900-T	NR	1E-6		1.055	[1.03-1.08]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1460	chr6	114713322	114713323	rs1033394	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	6q22.1	NR	rs1033394-C	NR	1E-6		1.0638298	[NR]	Illumina [7158791] (imputed)	N
1460	chr6	114719446	114719447	rs760608	28800603	Arpawong TE	2017-08-11	PLoS One	Genetic variants specific to aging-related verbal memory: Insights from GWASs in a population-based cohort.	Verbal memory performance (immediate recall change)	7,486 European ancestry individuals aged 50 years or older	6,898 European ancestry individuals aged 50 years or older	6q22.1	NR	rs760608-G	NR	4E-6			unit decrease	Illumina [at least 1198956] (imputed)	N
1460	chr6	114723477	114723478	rs75915571	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	6q22.1	Intergenic	rs75915571-A	0.1997	2E-8	(MTAG)	0.0117	[0.0076-0.0158] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1460	chr6	114742334	114742335	rs10080647	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6q22.1		rs10080647-A	0.1405	7E-10		0.0124	[0.0085-0.0163] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1460	chr6	114742334	114742335	rs10080647	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6q22.1	Intergenic	rs10080647-A	0.1405	9E-10	(MTAG)	0.0115	[0.0078-0.0152] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1462	chr6	114975424	114975425	rs117224174	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	6q22.1	HS3ST5, FRK	rs117224174-G	0.03	9E-8		0.3724	[0.24-0.51] unit decrease	Illumina [~ 9000000] (imputed)	N
1462	chr6	114975424	114975425	rs117224174	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	6q22.1	HS3ST5, FRK	rs117224174-G	0.03	3E-8	(EA)	0.3986	[0.26-0.54] unit decrease	Illumina [~ 9000000] (imputed)	N
1462	chr6	115005345	115005346	rs11153496	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	6q22.1		rs11153496-A	0.1	4E-8		5.5	z score increase	Affymetrix [9061022] (imputed)	N
1462	chr6	115069716	115069717	rs6928844	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6q22.1	NR	rs6928844-C	0.828248277703605	7E-6	(IGP40)	0.2768	[0.16-0.4] unit increase	Illumina [~ 2500000] (imputed)	N
1462	chr6	115069716	115069717	rs6928844	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6q22.1	NR	rs6928844-C	0.828187721552878	4E-6	(IGP39)	0.285	[0.16-0.41] unit increase	Illumina [~ 2500000] (imputed)	N
1463	chr6	115128945	115128946	rs6922641	34241534	Lu Y	2021-07-09	Circ Genom Precis Med	Multiethnic Genome-wide Association Study of Subclinical Atherosclerosis in Individuals with Type 2 Diabetes.	Carotid artery intima-media thickness in type 2 diabetes	838 African American individuals	NA	6q22.1		rs6922641-C	0.21	6E-7		0.06	[0.04-0.08] unit increase	Affymetrix, Illumina [19600000] (imputed)	N
1464	chr6	115257001	115257002	rs189479531	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	6q22.1	NR	rs189479531-?	NR	9E-10				Illumina [7760689] (imputed)	N
1464	chr6	115257001	115257002	rs189479531	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	6q22.1	NR	rs189479531-?	NR	2E-8				Illumina [7760689] (imputed)	N
1465	chr6	115381759	115381760	rs79267175	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	6q22.1		rs79267175-?	NR	5E-9				Affymetrix [NR] (imputed)	N
1465	chr6	115386611	115386612	rs75714786	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	6q22.1		rs75714786-?	NR	2E-9				Affymetrix [NR] (imputed)	N
1465	chr6	115398930	115398931	rs78870390	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	6q22.1		rs78870390-?	NR	1E-9				Affymetrix [NR] (imputed)	N
1465	chr6	115413267	115413268	rs142988447	34779240	Cheng B	2021-11-01	Bone Joint Res	Gut microbiota is associated with bone mineral density : an observational and genome-wide environmental interaction analysis in the UK Biobank cohort.	Femur total bone mineral density x gut microbiota (genus Lactococcus) interaction	2,293 European ancestry individuals	NA	6q22.1		rs142988447-T	NR	2E-9		0.569	[0.38-0.76] unit decrease	Affymetrix [509886] (imputed)	N
1465	chr6	115419049	115419050	rs145880548	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	6q22.1	NR	rs145880548-?	NR	9E-7		0.4797	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1465	chr6	115425241	115425242	rs74296447	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	6q22.1		rs74296447-?	NR	1E-8				Affymetrix [NR] (imputed)	N
1465	chr6	115439901	115439902	rs75317893	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	6q22.1		rs75317893-?	NR	1E-8				Affymetrix [NR] (imputed)	N
1466	chr6	115513802	115513803	rs4620151	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Photic sneeze reflex	32,446 European ancestry cases, 67,249 European ancestry controls	NA	6q22.1	FRK	rs4620151-?	NR	2E-9		1.073	[1.049-1.099]	Illumina [13729857] (imputed)	N
1467	chr6	115618883	115618884	rs12190538	31324189	Kim W	2019-07-19	Respir Res	DSP variants may be associated with longitudinal change in quantitative emphysema.	Emphysema annual change measurement in smokers (adjusted lung density)	4,427 European ancestry individuals, 1,158 African American individuals	NA	6q22.1	FRK	rs12190538-A	NR	5E-6		0.089	[0.05-0.128] unit decrease	Illumina [NR] (imputed)	N
1467	chr6	115650229	115650230	rs13437134	31005965	Coltell O	2019-04-21	Am J Clin Nutr	Association between taste perception and adiposity in overweight or obese older subjects with metabolic syndrome and identification of novel taste-related genes.	Taste perception (total score including phenylthiocarbamide) in obesity with metabolic syndrome	369 individuals	NA	6q22.1	intergenic	rs13437134-A	0.412	6E-6	(adjusted for sex and age)	1.499	[0.83-2.16] unit decrease	Illumina [622468]	N
1467	chr6	115699279	115699280	rs4535583	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	6q22.1	FRK	rs4535583-T	0.6991	4E-8		1.0214263		Affymetrix [11880941] (imputed)	N
1468	chr6	115739004	115739005	rs9488655	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6q22.1		rs9488655-T	0.3422	3E-8	(conditional-joint)	0.0082	[0.0053-0.0111] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1468	chr6	115821029	115821030	rs4946087	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	6q22.1	NR	rs4946087-C		6E-9		0.07	[0.05-0.09] unit increase	NR [NR]	N
1469	chr6	115894695	115894696	rs118113034	30294719	Zeng Y	2018-08-24	JAMA Netw Open	Sex Differences in Genetic Associations With Longevity.	Longevity	564 Han Chinese ancestry male centenarian cases, 1,614 Han Chinese ancestry female centenarian cases, 773 Han Chinese ancestry male middle-aged controls, 1,526 Han Chinese ancestry female middle-aged controls	NA	6q22.1	FRK	rs118113034-?	0.99	9E-6	(female)	3.125	[1.89-5.26]	Illumina [5595657] (imputed)	N
1469	chr6	115897305	115897306	rs77336660	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Spatial memory	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	6q22.1	intergenic	rs77336660-T	NR	8E-6		0.43229732	[0.24-0.62] unit decrease	Illumina [> 6200000] (imputed)	N
1469	chr6	115897698	115897699	rs10223402	28724990	Zillikens MC	2017-07-19	Nat Commun	Large meta-analysis of genome-wide association studies identifies five loci for lean body mass.	Appendicular lean mass	27,488 European ancestry individuals, 842 Old Order Amish individuals	42,360 European ancestry individuals, 380 African American individuals, 2,350 Korean ancestry individuals	6q22.1	FRK	rs10223402-?	0.17	9E-6		0.08	[0.041-0.119] unit increase	Affymetrix, Illumina [at least 1912063] (imputed)	N
1469	chr6	115975294	115975295	rs4266518	31005965	Coltell O	2019-04-21	Am J Clin Nutr	Association between taste perception and adiposity in overweight or obese older subjects with metabolic syndrome and identification of novel taste-related genes.	Taste perception (total score including phenylthiocarbamide) in obesity with metabolic syndrome	369 individuals	NA	6q22.1	intergenic	rs4266518-T	0.381	8E-6	(adjusted for sex and age)	1.473	[0.81-2.13] unit decrease	Illumina [622468]	N
1470	chr6	116002716	116002717	rs12205186	31324189	Kim W	2019-07-19	Respir Res	DSP variants may be associated with longitudinal change in quantitative emphysema.	Emphysema annual change measurement in smokers (adjusted lung density)	4,427 European ancestry individuals, 1,158 African American individuals	NA	6q22.1	FRK	rs12205186-A	0.686	3E-6	(EA)	0.1	[0.057-0.143] unit decrease	Illumina [NR] (imputed)	N
1470	chr6	116030805	116030806	rs4448128	30369944	Balakrishnan P	2018-10-12	Front Genet	Genetic Variants Related to Cardiometabolic Traits Are Associated to B Cell Function, Insulin Resistance, and Diabetes Among AmeriCan Indians: The Strong Heart Family Study.	HOMA-B (corrected for HOMA-IR)	1,892 American Indian ancestry individuals	NA	6q22.1	LOC441167, FRK	rs4448128-?	0.25	4E-7		16.62	unit decrease	Illumina [120975] (imputed)	N
1470	chr6	116096895	116096896	rs62416186	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6q22.1		rs62416186-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1471	chr6	116131962	116131963	rs527870168	34620984	Skuladottir AT	2021-10-07	Commun Biol	A genome-wide meta-analysis uncovers six sequence variants conferring risk of vertigo.	Vertigo	48,072 European ancestry cases, 894,541 European ancestry controls	NA	6q22.1		rs527870168-C	NR	2E-6		1.36738		Affymetrix, Illumina [62056310] (imputed)	N
1471	chr6	116147970	116147971	rs76468848	31311600	Namjou B	2019-07-17	BMC Med	GWAS and enrichment analyses of non-alcoholic fatty liver disease identify new trait-associated genes and pathways across eMERGE Network.	Alanine aminotransferase levels in non-alcoholic fatty liver disease	1,075 European ancestry individuals	NA	6q22.1	intergenic	rs76468848-C	0.100743	2E-6		0.303623	[0.18-0.43] unit increase	NR [7263501] (imputed)	N
1471	chr6	116231874	116231875	rs443869	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	6q22.1		rs443869-C	NR	1E-9		0.0129	[0.0088-0.017] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
1471	chr6	116232097	116232098	rs195485	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	6q22.1	NR	rs195485-T	0.38	2E-13		0.0138	[0.01-0.018] unit decrease	NR [NR]	N
1472	chr6	116270430	116270430	rs143717660	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	6q22.1		rs143717660-AC	NR	1E-8		0.0133	[0.0088-0.0178] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1472	chr6	116287195	116287196	rs184128865	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	6q22.1	NR	rs184128865-C		2E-8		0.08	[0.06-0.1] unit increase	NR [NR]	N
1472	chr6	116305917	116305918	rs147759090	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	6q22.1		rs147759090-T	NR	8E-12		0.0182	[0.013-0.023] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
1472	chr6	116310286	116310287	rs1933737	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	6q22.1		rs1933737-C	NR	7E-12		0.017	[0.012-0.022] unit decrease	Affymetrix, Illumina [20529698] (imputed)	N
1472	chr6	116310286	116310287	rs1933737	23263486	Kottgen A	2012-12-23	Nat Genet	Genome-wide association analyses identify 18 new loci associated with serum urate concentrations.	Urate levels	49,825 European ancestry males, 60,522 European ancestry females	Up to 32,813 European ancestry individuals	6q22.1	FRK	rs1933737-T	0.69	7E-7	(women)	0.034	[0.02-0.047] mg/dl increase	Affymetrix, Illumina, Perlegen [2450547] (imputed)	N
1472	chr6	116311762	116311763	rs36061333	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	6q22.1	FRK	rs36061333-C		2E-8		0.16	unit increase	Affymetrix [at least 2696785] (imputed)	N
1472	chr6	116312892	116312893	rs9488822	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	6q22.1	FRK	rs9488822-T	0.36	2E-7		0.031	[NR] unit increase	NR [NR] (imputed)	N
1472	chr6	116312892	116312893	rs9488822	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	6q22.1	FRK	rs9488822-T	0.36	1E-9		0.034	[NR] unit increase	NR [NR] (imputed)	N
1472	chr6	116312892	116312893	rs9488822	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	LDL cholesterol	95,454 European ancestry individuals	NA	6q22.1	FRK	rs9488822-T	0.41	3E-9		0.89	[0.54-1.24] mg/dL decrease	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1472	chr6	116312892	116312893	rs9488822	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	Cholesterol, total	100,184 European ancestry individuals	NA	6q22.1	FRK	rs9488822-T	0.35	2E-10		1.18	[0.79-1.57] mg/dL decrease	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1472	chr6	116313930	116313931	rs3822857	27286809	Ligthart S	2016-06-10	BMC Genomics	Bivariate genome-wide association study identifies novel pleiotropic loci for lipids and inflammation.	C-reactive protein levels or total cholesterol levels (pleiotropy)	65,000 individuals (C-reactive protein), 100,184 individuals (total cholesterol)	NA	6q22.1	FRK	rs3822857-C	NR	2E-12				NR [2501549] (imputed)	N
1472	chr6	116313930	116313931	rs3822857	27286809	Ligthart S	2016-06-10	BMC Genomics	Bivariate genome-wide association study identifies novel pleiotropic loci for lipids and inflammation.	C-reactive protein levels or LDL-cholesterol levels (pleiotropy)	65,000 individuals (C-reactive protein), 95,454 individuals (LDL-cholesterol)	NA	6q22.1	FRK	rs3822857-C	NR	8E-12				NR [2501749] (imputed)	N
1472	chr6	116314633	116314634	rs12202641	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	up to 92,771 European ancestry males, up to 113,387 European ancestry females	NA	6q22.1	FRK	rs12202641-T	0.39	3E-10		0.023	[0.015-0.031] unit decrease	Affymetrix, Illumina, Perlegen [2437193] (imputed)	N
1472	chr6	116316102	116316103	rs3822856	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	6q22.1	TPI1P3	rs3822856-C	0.598309	1E-20		0.00224391	[0.0018-0.0027] unit decrease	Affymetrix [13995440] (imputed)	N
1472	chr6	116316881	116316882	rs3822855	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Polyunsaturated fatty acid levels	115,006 European ancestry individuals	NA	6q22.1		rs3822855-G	0.599218	3E-9		0.024354	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
1472	chr6	116316881	116316882	rs3822855	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	6q22.1	FRK	rs3822855-G	0.59834	4E-17		0.017915	[0.014-0.022] unit decrease	Affymetrix [NR] (imputed)	N
1472	chr6	116316881	116316882	rs3822855	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	6q22.1	FRK	rs3822855-G	0.598364	2E-12		0.0149153	[0.011-0.019] unit decrease	Affymetrix [NR] (imputed)	N
1472	chr6	116316895	116316896	rs3822854	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	6q22.1		rs3822854-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1472	chr6	116317091	116317092	rs3798233	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	6q22.1	FRK	rs3798233-A	0.597984	2E-19		0.0180323	[0.014-0.022] unit decrease	Affymetrix [NR] (imputed)	N
1472	chr6	116317443	116317444	rs3798232	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	6q22.1		rs3798232-C	NR	5E-16		0.0171	[0.013-0.021] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
1472	chr6	116317443	116317444	rs3798232	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	6q22.1	FRK	rs3798232-C	0.4	2E-9		6.04	z-score increase	Affymetrix [4314223] (imputed)	N
1472	chr6	116322348	116322349	rs6934962	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-6 fatty acid levels	115,006 European ancestry individuals	NA	6q22.1		rs6934962-C	0.599527	2E-8		0.0232763	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
1472	chr6	116322348	116322349	rs6934962	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	6q22.1	FRK	rs6934962-C	0.59849	6E-17		0.016256	[0.012-0.02] unit decrease	Affymetrix [NR] (imputed)	N
1472	chr6	116325107	116325108	rs34064900	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6q22.1	NR	rs34064900-A	0.01045	2E-10	(CYP3A4)	1.547	NR unit increase	Illumina [1671387] (imputed)	N
1472	chr6	116325107	116325108	rs34064900	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6q22.1	NR	rs34064900-A	0.01045	1E-15	(CYP3A5)	0.1859	NR unit increase	Illumina [1671387] (imputed)	N
1472	chr6	116325141	116325142	rs3756772	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	6q22.1		rs3756772-T	NR	3E-23		0.0201	[0.016-0.024] unit increase	Affymetrix, Illumina [20536134] (imputed)	N
1472	chr6	116325141	116325142	rs3756772	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	6q22.1		rs3756772-T	NR	7E-15		0.017	[0.013-0.021] unit increase	Affymetrix, Illumina [20521447] (imputed)	N
1472	chr6	116325141	116325142	rs3756772	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	6q22.1		rs3756772-T	NR	1E-16		0.0161	[0.012-0.02] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
1472	chr6	116325141	116325142	rs3756772	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	6q22.1	FRK	rs3756772-T	0.4	6E-12		6.89	z-score increase	Affymetrix [4312306] (imputed)	N
1472	chr6	116327492	116327493	rs1538385	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	6q22.1		rs1538385-G	NR	3E-13		0.0145	[0.011-0.018] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
1472	chr6	116337502	116337503	rs868943	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Total cholesterol levels	32,576 East Asian ancestry individuals, 187,365 European ancestry individuals	10,855 Chinese ancestry individuals	6q22.1	FRK	rs868943-A	0.394	2E-13	(Trans-ethnic initial)	0.0292	[0.022-0.036] unit decrease (EA Beta values)	Affymetrix, Illumina [up to 1900000] (imputed)	N
1472	chr6	116338064	116338065	rs1890426	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Aspartate aminotransferase levels	386,570 British ancestry individuals, 10,617 Asian or Asian British individuals, 7,426 Black or Black British individuals, 2,321 Chinese ancestry individuals	NA	6q22.1	FRK	rs1890426-?	NR	5E-15		0.0021	[0.0015-0.0027] unit increase	Affymetrix [21347608] (imputed)	N
1472	chr6	116338064	116338065	rs1890426	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Alanine aminotransferase levels	387,859 British ancestry individuals, 10,635 Asian or Asian British individuals, 7,468 Black or Black British individuals, 2,338 Chinese ancestry individuals	NA	6q22.1	FRK	rs1890426-?	NR	5E-16		0.0033	[0.0025-0.0041] unit increase	Affymetrix [21347608] (imputed)	N
1472	chr6	116338064	116338065	rs1890426	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	6q22.1	TPI1P3	rs1890426-T	0.59826	6E-16		0.0032471	[0.0025-0.004] unit decrease	Affymetrix [13995440] (imputed)	N
1472	chr6	116338064	116338065	rs1890426	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	6q22.1	NR	rs1890426-C	0.40117100000000006	2E-9		0.00726876	[0.005-0.0096] unit increase	Affymetrix [16582621] (imputed)	N
1472	chr6	116338064	116338065	rs1890426	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	6q22.1	NR	rs1890426-C	0.40117100000000006	2E-9		0.00749464	[0.005-0.01] unit increase	Affymetrix [16582614] (imputed)	N
1472	chr6	116345125	116345125	rs35936182	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	6q22.1	FRK	rs35936182-?	NR	1E-18		0.0228	[0.018-0.027] unit decrease	Affymetrix [5701386] (imputed)	N
1472	chr6	116350787	116350788	rs952373	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	6q22.1		rs952373-A	NR	9E-19		0.0192	[0.015-0.024] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
1472	chr6	116352749	116352750	rs6909746	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	LDL cholesterol levels	32,285 East Asian ancestry individuals, 173,082 European ancestry individuals	8,478 Chinese ancestry individuals	6q22.1	FRK	rs6909746-T	0.392	2E-9	(Trans-ethnic initial)	0.0263	[0.019-0.034] unit decrease (EA Beta value)	Affymetrix, Illumina [~ 1900000] (imputed)	N
1472	chr6	116387133	116387134	rs1999930	21665990	Yu Y	2011-06-10	Hum Mol Genet	Common variants near FRK/COL10A1 and VEGFA are associated with advanced age-related macular degeneration.	Age-related macular degeneration	2,594 European ancestry cases, 4,134 European ancestry controls	5,640 European ancestry cases, 52,174 European ancestry controls	6q22.1	FRK, COL10A1	rs1999930-?	0.70	1E-8		1.15	[NR]	Affymetrix [6036699] (imputed)	N
1472	chr6	116387254	116387255	rs1933736	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	6q22.1	NR	rs1933736-T	0.598949	2E-21		0.0184113	[0.015-0.022] unit decrease	NR [NR]	N
1472	chr6	116389635	116389636	rs13210143	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	6q22.1	FRK, NT5DC1	rs13210143-A	NR	8E-12	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1472	chr6	116389635	116389636	rs13210143	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	6q22.1	FRK, NT5DC1	rs13210143-A	NR	1E-13				Affymetrix, Illumina [NR] (imputed)	N
1472	chr6	116389635	116389636	rs13210143	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	6q22.1	FRK, NT5DC1	rs13210143-A	NR	5E-13	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1472	chr6	116389635	116389636	rs13210143	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	6q22.1	FRK, NT5DC1	rs13210143-A	NR	3E-15				Affymetrix, Illumina [NR] (imputed)	N
1472	chr6	116389635	116389636	rs13210143	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	6q22.1	FRK, NT5DC1	rs13210143-A	NR	8E-9		0.897	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1472	chr6	116389635	116389636	rs13210143	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	6q22.1	FRK, NT5DC1	rs13210143-A	NR	7E-7	(EA)	0.886	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1472	chr6	116389635	116389636	rs13210143	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	6q22.1	FRK, NT5DC1	rs13210143-A	NR	6E-6		0.00532	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1472	chr6	116389976	116389977	rs12529273	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Choroid plexus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	6q22.1	FRK	rs12529273-?		1E-6				Illumina [4322238] (imputed)	N
1473	chr6	116393726	116393727	rs72951954	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	6q22.1	intergenic	rs72951954-A	0.3924	4E-13		0.0196	[0.014-0.025] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1473	chr6	116393726	116393727	rs72951954	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	6q22.1	intergenic	rs72951954-A	0.3923	3E-10		0.017	[0.012-0.022] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1473	chr6	116396980	116396981	rs4946136	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	High density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	6q22.1	FRK, NT5DC1	rs4946136-?		8E-9		0.0255	[0.017-0.034] unit increase	Illumina [31500000] (imputed)	N
1473	chr6	116399251	116399252	rs530960	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6q22.1		rs530960-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1473	chr6	116399371	116399372	rs6932852	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6q22.1	NR	rs6932852-C	NR	3E-8		0.024	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1473	chr6	116399371	116399372	rs6932852	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6q22.1	NR	rs6932852-C	0.583	6E-6	(EA)	0.021	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1473	chr6	116399371	116399372	rs6932852	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6q22.1	NR	rs6932852-C	NR	5E-6		0.02	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1473	chr6	116399821	116399822	rs6938248	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Inferior parietal cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	6q22.1	NR	rs6938248-?		9E-7				Illumina [4322238] (imputed)	N
1473	chr6	116404989	116404989	rs35753734	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	6q22.1		rs35753734-AT	NR	1E-13		0.0188	[0.014-0.024] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
1473	chr6	116418111	116418112	rs4946137	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	6q22.1	NR	rs4946137-A	0.4015	4E-14		0.001687	[0.0012-0.0021] unit increase	Affymetrix [NR] (imputed)	N
1473	chr6	116418111	116418112	rs4946137	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	6q22.1	FRK, NT5DC1	rs4946137-A	0.4	2E-9		6.01	z-score increase	Affymetrix [4311822] (imputed)	N
1473	chr6	116422533	116422534	rs9400888	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	6q22.1	NT5DC1	rs9400888-T	0.457499	6E-10		0.0137904035	[0.0094-0.0181] unit decrease	Affymetrix [93095623] (imputed)	N
1473	chr6	116427813	116427814	rs576791	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia	11,197 European ancestry low myopic cases, 21,416 European ancestry emmetropia controls	NA	6q22.1	NR	rs576791-?	NR	4E-6		0.076867	[0.044-0.11] unit decrease	NR [13958389] (imputed)	N
1473	chr6	116430532	116430533	rs482012	31417091	Kou I	2019-08-15	Nat Commun	Genome-wide association study identifies 14 previously unreported susceptibility loci for adolescent idiopathic scoliosis in Japanese.	Adolescent idiopathic scoliosis	5,327 Japanese ancestry cases, 73,884 Japanese ancestry controls	NA	6q22.1	NT5DC1	rs482012-T	0.72	2E-8		1.14	[1.09-1.19]	Illumina [9332516] (imputed)	N
1473	chr6	116441645	116441646	rs2228547	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	6q22.1	NR	rs2228547-C		6E-12		0.12	[0.081-0.159] unit increase	NR [NR]	N
1473	chr6	116443734	116443735	rs3812111	23455636	Fritsche LG	2013-03-03	Nat Genet	Seven new loci associated with age-related macular degeneration.	Age-related macular degeneration	6,713 European ancestry cases, 48,402 European ancestry contols, 110 Southern Indian ancestry cases, 119 Southern Indian ancestry controls, 827 Japanese ancestry cases, 3,323 Japanese ancestry controls	9,070 European ancestry cases, 7,683 European ancestry contols, 461 East Asian ancestry cases, 547 East Asian ancestry controls	6q22.1	COL10A1	rs3812111-T	0.64	2E-8		1.1	[1.07-1.14]	Affymetrix, Illumina [2442884] (imputed)	N
1473	chr6	116446575	116446576	rs1064583	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	6q22.1	FRK, NT5DC1, COL10A1, TSPYL4, TSPYL1, DSE, TRAPPC3L	rs1064583-?		2E-36				Affymetrix, Illumina [NR] (imputed)	N
1473	chr6	116446575	116446576	rs1064583	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	6q22.1	COL10A1	rs1064583-A	0.6162	7E-11		6.523	[NR] z score increase	Affymetrix, Illumina [~ 11000000] (imputed)	N
1473	chr6	116446575	116446576	rs1064583	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Myopia (age of diagnosis)	104,293 European ancestry individuals	NA	6q22.1	NR	rs1064583-A	0.612	7E-11		0.0467	[0.033-0.061] unit increase	Illumina [~ 10600000] (imputed)	N
1473	chr6	116446575	116446576	rs1064583	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Myopia	106,086 European ancestry cases, 85,757 European ancestry controls	NA	6q22.1	NT5DC1, COL10A1	rs1064583-?	NR	2E-13		1.056	[1.041-1.072]	Illumina [13762925] (imputed)	N
1473	chr6	116489265	116489266	rs371321633	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6q22.1	NR	rs371321633-T	0.01045	4E-9	(CYP3A4)	1.439	NR unit increase	Illumina [1671387] (imputed)	N
1473	chr6	116509635	116509636	rs12526817	30889042	Innocenti F	2019-03-18	Pharmacogenet Genomics	An initial genetic analysis of gemcitabine-induced high-grade neutropenia in pancreatic cancer patients CALGB 80303 (Alliance).	Gemcitabine-induced early high-grade neutropenia in pancreatic cancer	294 European ancestry cases	NA	6q22.1	NT5DC1, COL10A1, TSPYL4	rs12526817-?	NR	3E-6		2.22	[1.57-3.14]	Illumina [457310]	N
1473	chr6	116521189	116521190	rs1204845	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	6q22.1	NR	rs1204845-?	NR	1E-7		0.109241	[0.069-0.15] unit decrease	NR [13958389] (imputed)	N
1474	chr6	116543846	116543847	rs1204798	23064961	Shaffer JR	2012-10-11	J Dent Res	GWAS of dental caries patterns in the permanent dentition.	Dental caries	920 European ancestry individuals	NA	6q22.1	NT5DC1	rs1204798-?	NR	2E-6	(DMFS2)			Illumina [518997]	N
1474	chr6	116548642	116548643	rs6913481	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6q22.1	TSPYL4	rs6913481-?	NR	2E-6	(beta aminoisobutyric acid)	0.57882833	[0.34-0.82] unit increase	Affymetrix [at least 2500000] (imputed)	N
1474	chr6	116571254	116571255	rs6755	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	6q22.1	NR	rs6755-A	NR	1E-10		0.0161	[0.011-0.021] unit increase	Affymetrix [9000000] (imputed)	N
1474	chr6	116610200	116610201	rs60678552	25130324	Cai DC	2014-08-29	Genes Brain Behav	A genome-wide search for quantitative trait loci affecting the cortical surface area and thickness of Heschl's gyrus.	Heschl's gyrus morphology	1,778 European ancestry individuals, 1,276 individuals	NA	6q22.1	DSE	rs60678552-C	0.87	5E-6	(Right HG area)	7.73	unit increase	Affymetrix, Illumina [4103035] (imputed)	N
1475	chr6	116663322	116663323	rs2252790	28040410	Meyers JL	2016-12-28	Int J Psychophysiol	A genome wide association study of fast beta EEG in families of European ancestry.	Fast beta electroencephalogram	1,564 European ancestry individuals from 117 alcohol dependence affected families	NA	6q22.1	DSE, TSPYL4	rs2252790-G	0.36	3E-8		0.135	[0.087-0.181] unit increase	Illumina [12973748] (imputed)	N
1475	chr6	116690848	116690849	rs9488914	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6q22.1	DSE	rs9488914-T	0.92	1E-8		0.862	[0.81-0.91]	Illumina [11270530] (imputed)	N
1475	chr6	116694119	116694120	rs9387400	33536424	Wang YF	2021-02-03	Nat Commun	Identification of 38 novel loci for systemic lupus erythematosus and genetic heterogeneity between ancestral groups.	Systemic lupus erythematosus	4,222 Han Chinese ancestry cases, 8,431 Han Chinese ancestry controls, 4,576 European ancestry cases, 8,039 European ancestry controls	NA	6q22.1	DSE	rs9387400-A	NR	6E-6		0.89	[0.84-0.94]	Illumina [NR] (imputed)	N
1475	chr6	116694119	116694120	rs9387400	33536424	Wang YF	2021-02-03	Nat Commun	Identification of 38 novel loci for systemic lupus erythematosus and genetic heterogeneity between ancestral groups.	Systemic lupus erythematosus	4,222 Han Chinese ancestry cases, 8,431 Han Chinese ancestry controls	NA	6q22.1	DSE	rs9387400-A	NR	3E-8		0.743	[0.64-0.85]	Illumina [5719137] (imputed)	N
1475	chr6	116697129	116697130	rs11754507	30718454	Arnau-Soler A	2019-02-04	Transl Psychiatry	Genome-wide by environment interaction studies of depressive symptoms and psychosocial stress in UK Biobank and Generation Scotland.	Depressive symptoms x dependent stressful life events interaction (2df test)	4,919 European ancestry individuals	NA	6q22.1	DSE	rs11754507-G	0.01701	3E-6		0.14902	NR unit increase	Illumina [560351]	N
1475	chr6	116697129	116697130	rs11754507	30718454	Arnau-Soler A	2019-02-04	Transl Psychiatry	Genome-wide by environment interaction studies of depressive symptoms and psychosocial stress in UK Biobank and Generation Scotland.	Depressive symptoms x dependent stressful life events interaction (1df test)	4,919 European ancestry individuals	NA	6q22.1	DSE	rs11754507-G	0.01701	2E-6		0.251601	NR unit increase	Illumina [560351]	N
1475	chr6	116707298	116707299	rs13203813	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6q22.1	DSE	rs13203813-T	0.2937	5E-6		0.032	[0.018-0.046] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1475	chr6	116718515	116718515	rs11406105	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6q22.1	DSE	rs11406105-A	NR	1E-9		0.0187413	[0.013-0.025] unit decrease	Affymetrix [323123] (imputed)	N
1475	chr6	116720513	116720514	rs35548455	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	6q22.1		rs35548455-T	NR	6E-13		0.0331	[0.024-0.042] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1475	chr6	116720513	116720514	rs35548455	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	6q22.1	DSE	rs35548455-T	0.067819	2E-14		0.03394354	[0.025-0.043] unit increase	Affymetrix [93095623] (imputed)	N
1475	chr6	116720513	116720514	rs35548455	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	6q22.1	DSE	rs35548455-T	0.067827	8E-13		0.03193502	[0.023-0.041] unit decrease	Affymetrix [93095623] (imputed)	N
1475	chr6	116720513	116720514	rs35548455	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q22.1	NR	rs35548455-T	0.0639571	1E-16				Affymetrix, Illumina [24588908] (imputed)	N
1475	chr6	116720513	116720514	rs35548455	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	6q22.1	NR	rs35548455-T	0.0669	1E-19		0.033128	[0.026-0.04] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1475	chr6	116720513	116720514	rs35548455	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q22.1	NR	rs35548455-C	0.934345	6E-11				Affymetrix, Illumina [17210439] (imputed)	N
1475	chr6	116720513	116720514	rs35548455	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	6q22.1	NR	rs35548455-C	0.932374	6E-13		0.027536	[0.02-0.035] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1475	chr6	116726331	116726332	rs6908915	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6q22.1		rs6908915-?	NR	5E-36				NR [~ 8900000] (imputed)	N
1475	chr6	116736958	116736959	rs6568938	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6q22.1	DSE	rs6568938-G	NR	3E-8		0.0176935	[0.011-0.024] unit decrease	Affymetrix [321016] (imputed)	N
1475	chr6	116768916	116768917	rs2858829	29903748	Debiec H	2018-06-14	J Am Soc Nephrol	Transethnic, Genome-Wide Analysis Reveals Immune-Related Risk Alleles and Phenotypic Correlates in Pediatric Steroid-Sensitive Nephrotic Syndrome.	Childhood steroid-sensitive nephrotic syndrome	244 European ancestry cases, 2,552 European ancestry controls, 56 African cases, 454 African controls, 85 Maghrebian cases, 261 Maghrebian controls	NA	6q22.1	intergenic	rs2858829-?		7E-8				Illumina [at least 7529344] (imputed)	N
1475	chr6	116768916	116768917	rs2858829	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Ulcerative colitis	12,366 European and unknown ancestry cases, 33,609 European and unknown ancestry controls	NA	6q22.1	FAM26F, TRAPPC3L	rs2858829-?		9E-6				Illumina [9578670] (imputed)	N
1475	chr6	116768916	116768917	rs2858829	25082827	Julia A	2014-07-31	Hum Mol Genet	A genome-wide association study identifies a novel locus at 6q22.1 associated with ulcerative colitis.	Ulcerative colitis	up to 7,483 European ancestry cases, up to 21,211 European ancestry controls	1,073 European ancestry cases, 1,279 European ancestry controls	6q22.1	FAM26F	rs2858829-?	NR	8E-10		1.12	[1.08-1.16]	Illumina [546271]	N
1475	chr6	116769597	116769598	rs17077968	27632927	Einarsdottir E	2016-09-16	Sci Rep	Genome-wide association analysis reveals variants on chromosome 19 that contribute to childhood risk of chronic otitis media with effusion.	Otitis media (recurrent)	702 Finnish ancestry child cases, 2,073 Finnish ancestry controls	NA	6q22.1	NR	rs17077968-?	NR	3E-6				Illumina [319683]	N
1475	chr6	116769597	116769598	rs17077968	27632927	Einarsdottir E	2016-09-16	Sci Rep	Genome-wide association analysis reveals variants on chromosome 19 that contribute to childhood risk of chronic otitis media with effusion.	Otitis media	803 Finnish ancestry child cases, 2,073 Finnish ancestry controls	NA	6q22.1	NR	rs17077968-?	NR	3E-6				Illumina [319683]	N
1475	chr6	116775632	116775633	rs2640882	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Middle temporal gyrus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	6q22.1	NR	rs2640882-?		1E-6				Illumina [4322238] (imputed)	N
1475	chr6	116776498	116776499	rs2858830	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation GrimAge acceleration	6,148 African American individuals	NA	6q22.1	NR	rs2858830-G	0.6305	3E-10		0.6412	[0.44-0.84] unit decrease	Affymetrix, Illumina [12989440] (imputed)	N
1475	chr6	116776498	116776499	rs2858830	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation GrimAge acceleration	34,467 European ancestry individuals, 6,148 African American individuals	NA	6q22.1	NR	rs2858830-?	NR	2E-10				Affymetrix, Illumina [6210740] (imputed)	N
1476	chr6	116787377	116787378	rs2637678	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Spinal canal stenosis	9,660 European ancestry cases, 445,127 European ancestry controls, 661 East Asian ancestry cases, 178,065 East Asian ancestry controls	NA	6q22.1		rs2637678-C	NR	9E-9		0.0863	[0.057-0.116] unit decrease	Affymetrix, Illumina [25840105] (imputed)	N
1476	chr6	116787377	116787378	rs2637678	31263063	Dufek S	2019-07-01	J Am Soc Nephrol	Genetic Identification of Two Novel Loci Associated with Steroid-Sensitive Nephrotic Syndrome.	Childhood steroid-sensitive nephrotic syndrome	422 European ancestry cases, 5,642 European ancestry controls	NA	6q22.1	CALHM6, FAM26F	rs2637678-?	0.6	1E-17		1.9607843	[1.67-2.27]	Illumina [5216266] (imputed)	N
1476	chr6	116855952	116855952	rs34333482	26545240	Giri A	2015-11-06	PLoS One	Genetic Determinants of Pelvic Organ Prolapse among African American and Hispanic Women in the Women's Health Initiative.	Pelvic organ prolapse (moderate/severe)	154 African American cases, 948 African American controls, 163 Hispanic cases, 305 Hispanic controls	NA	6q22.1	FAM26D	rs34333482-A	0.52	6E-6		1.5384616		Affymetrix [at least 730985] (imputed)	N
1476	chr6	116892680	116892681	rs147899431	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	6q22.1		rs147899431-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1476	chr6	116904430	116904431	rs184392414	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	6q22.1	NR	rs184392414-?	NR	6E-9				Illumina [7760689] (imputed)	N
1477	chr6	117032160	117032161	rs181993557	31600170	Teumer A	2019-10-10	JCI Insight	KCND3 potassium channel gene variant confers susceptibility to electrocardiographic early repolarization pattern.	Early cardiac repolarization	3,305 European ancestry cases, 36,151 European ancestry controls	NA	6q22.1	KPNA5	rs181993557-A	0.02	6E-7		1.86	[1.62-2.1]	Affymetrix, Illumina [up to 6976246] (imputed)	N
1478	chr6	117086377	117086378	rs654128	21460395	Gu J	2011-04-02	Cancer Prev Res (Phila)	A genome-wide association study identifies a locus on chromosome 14q21 as a predictor of leukocyte telomere length and as a marker of susceptibility for bladder cancer.	Telomere length	459 individuals	1,160 individuals	6q22.1	KPNA5	rs654128-?	NR	3E-6		0.12	[NR] unit increase	Illumina [312531]	N
1478	chr6	117114024	117114025	rs6901250	21300955	Dehghan A	2011-02-07	Circulation	Meta-analysis of genome-wide association studies in >80 000 subjects identifies multiple loci for C-reactive protein levels.	C-reactive protein levels	63,678 European ancestry individuals 1,792 Erasmus Rucphen individuals, 715 Orcadian individuals	16,540 European ancestry individuals	6q22.1	GPRC6A	rs6901250-A	NR	5E-8		0.035	[0.03-0.05] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1478	chr6	117157773	117157774	rs636252	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	6q22.1	GPRC6A, RFX6	rs636252-T	0.407676	5E-8		0.016815	[0.011-0.023] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
1479	chr6	117182548	117182549	rs72963976	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6q22.1		rs72963976-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1479	chr6	117200433	117200434	rs339351	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 91,972 European ancestry controls	6,852 European ancestry cases, 193,117 European ancestry controls	6q22.1	NR	rs339351-C	0.695001072	1E-7		1.104749	[1.07-1.15]	Affymetrix, Illumina [20400945] (imputed)	N
1479	chr6	117200433	117200434	rs339351	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	6q22.1	NR	rs339351-C	NR	3E-53		1.116	[1.10-1.13]	Affymetrix, Illumina [29235255] (imputed)	N
1479	chr6	117200433	117200434	rs339351	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	8,611 East Asian ancestry cases, 18,809 East Asian ancestry controls	NA	6q22.1	NR	rs339351-C	0.64	8E-23		1.221	[1.17-1.27]	Affymetrix, Illumina [10186136] (imputed)	N
1479	chr6	117200433	117200434	rs339351	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	10,368 African ancestry cases, 10,986 African ancestry controls	NA	6q22.1	NR	rs339351-C	0.741	9E-17		1.218	[1.16-1.28]	Affymetrix, Illumina [18877980] (imputed)	N
1479	chr6	117200433	117200434	rs339351	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Prostate cancer	10,792 European ancestry cases, 410,350 European ancestry controls	NA	6q22.1		rs339351-C	NR	2E-13		1.1252	NR	Affymetrix [7846216] (imputed)	N
1479	chr6	117200433	117200434	rs339351	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6q22.1		rs339351-C	NR	4E-10		1.116	[1.078-1.155]	Affymetrix [7846216] (imputed)	N
1479	chr6	117205392	117205393	rs339325	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6q22.1	GPRC6A	rs339325-?	NR	2E-6	(hippuric acid)	0.19385336	[0.11-0.27] unit increase	Affymetrix [at least 2500000] (imputed)	N
1479	chr6	117210051	117210052	rs339331	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Prostate cancer	7,438 White British ancestry cases, 118,206 White British ancestry controls	NA	6q22.1		rs339331-?	NR	4E-11		0.882066	[0.84-0.92]	NR [680312]	N
1479	chr6	117210051	117210052	rs339331	33293427	Emami NC	2020-12-08	Cancer Res	A large-scale association study detects novel rare variants, risk genes, functional elements, and polygenic architecture of prostate cancer susceptibility.	Prostate cancer	14,113 European ancestry cases, 194,140 European ancestry controls	NA	6q22.1	NR	rs339331-T	NR	4E-10		1.1	NR	Affymetrix [at least 232408] (imputed)	N
1479	chr6	117210051	117210052	rs339331	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Prostate cancer	5,408 Japanese ancestry cases, 103,939 Japanese ancestry controls	NA	6q22.1		rs339331-C	0.367114986	5E-20		0.82330304	[0.789799298-0.858228063]	Illumina [8919992] (imputed)	N
1479	chr6	117210051	117210052	rs339331	31562322	Takata R	2019-09-27	Nat Commun	12 new susceptibility loci for prostate cancer identified by genome-wide association study in Japanese population.	Prostate cancer	5,088 Japanese ancestry cases, 10,682 Japanese ancestry controls	4,818 Japanese ancestry cases, 73,261 Japanese ancestry controls	6q22.1	RFX6	rs339331-T	0.631	9E-15		1.222	NR	Illumina [7742602] (imputed)	N
1479	chr6	117210051	117210052	rs339331	26443449	Wang M	2015-10-07	Nat Commun	Large-scale association analysis in Asians identifies new susceptibility loci for prostate cancer.	Prostate cancer	3,000 East Asian ancestry cases, 4,394 East Asian ancestry controls	3,605 East Asian ancestry cases, 3,919 East Asian ancestry controls	6q22.1	RFX6	rs339331-T	NR	4E-11		1.2820514	[NR]	Illumina [4550396] (imputed)	N
1479	chr6	117210051	117210052	rs339331	26034056	Hoffmann TJ	2015-06-01	Cancer Discov	A large multiethnic genome-wide association study of prostate cancer identifies novel risk variants and substantial ethnic differences.	Prostate cancer	6,406 European ancestry cases, 601 African American cases, 288 East Asian ancestry cases, 488 Latino cases30,866 European ancestry controls, 1,650 African American controls, 2,938 East Asian ancestry controls, 3,141 Latino controls	4,599 European ancestry cases, 2,265 African American cases, 2,940 European ancestry controls, 2,414 African American controls	6q22.1	NR	rs339331-T	0.71	6E-7		1.12	[1.07-1.17]	Affymetrix [up to 19977088] (imputed)	N
1479	chr6	117210051	117210052	rs339331	26034056	Hoffmann TJ	2015-06-01	Cancer Discov	A large multiethnic genome-wide association study of prostate cancer identifies novel risk variants and substantial ethnic differences.	Prostate cancer	6,406 European ancestry cases, 601 African American cases, 288 East Asian ancestry cases, 488 Latino cases30,866 European ancestry controls, 1,650 African American controls, 2,938 East Asian ancestry controls, 3,141 Latino controls	4,599 European ancestry cases, 2,265 African American cases, 2,940 European ancestry controls, 2,414 African American controls	6q22.1	NR	rs339331-T	0.71	1E-6	(European)	1.13	[1.07-1.18]	Affymetrix [up to 19977088] (imputed)	N
1479	chr6	117210051	117210052	rs339331	20676098	Takata R	2010-08-01	Nat Genet	Genome-wide association study identifies five new susceptibility loci for prostate cancer in the Japanese population.	Prostate cancer	1,583 Japanese ancestry cases, 3,386 Japanese ancestry controls	3,001 Japanese ancestry cases, 5,415 Japanese ancestry controls	6q22.1	GPRC6A, RFX6	rs339331-T	0.37	2E-12		1.22	[1.15-1.28]	Illumina [510687]	N
1479	chr6	117212688	117212689	rs339334	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Prostate cancer	11,599 European ancestry cases, 199,628 European ancestry controls, 5,672 East Asian ancestry cases, 84,660 East Asian ancestry controls	NA	6q22.1		rs339334-G	NR	3E-27		0.1351	[0.11-0.16] unit decrease	Affymetrix, Illumina [25775424] (imputed)	N
1479	chr6	117229805	117229806	rs12201912	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	6q22.1		rs12201912-?	NR	9E-15				NR [~ 8900000] (imputed)	N
1479	chr6	117236852	117236853	rs1406982	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	6q22.1	RFX6	rs1406982-T	0.686128	1E-11		0.0142864	[0.01-0.018] unit increase	Affymetrix [NR] (imputed)	N
1479	chr6	117240592	117240593	rs1321366	27569725	Yang SK	2016-08-25	Gastroenterology	Identification of Loci at 1q21 and 16q23 That Affect Susceptibility to Inflammatory Bowel Disease in Koreans.	Inflammatory bowel disease	1,505 Korean ancestry cases, 4,041 Korean ancestry controls	1,989 Korean ancestry cases, 3,491 Korean ancestry controls	6q22.1	FAM162B, GPRC6A, RFX6	rs1321366-A	0.35	5E-6		1.15	[NR]	Illumina [522285]	N
1479	chr6	117242020	117242021	rs12202378	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Prostate cancer	5,672 East Asian ancestry cases, 84,660 East Asian ancestry controls	NA	6q22.1		rs12202378-C	0.409557839	3E-19		0.19103399	[0.15-0.23] unit decrease	Illumina [13406905] (imputed)	N
1479	chr6	117250181	117250182	rs673055	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	6q22.1	NR	rs673055-T	NR	5E-14		0.024	[0.018-0.03] unit decrease	Affymetrix [9000000] (imputed)	N
1479	chr6	117257017	117257018	rs674621	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	6q22.1	RFX6	rs674621-C	0.32	8E-9		1.06	[1.04-1.08]	Affymetrix, Illumina [6224355] (imputed)	N
1479	chr6	117257542	117257543	rs665401	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	6q22.1	RFX6	rs665401-C	0.3186	4E-9		0.02259798	[0.015-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1479	chr6	117257571	117257572	rs56234303	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	6q22.1		rs56234303-C	NR	3E-10		0.011	[0.0077-0.0143] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
1479	chr6	117257694	117257695	rs664846	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	6q22.1	RFX6	rs664846-A	0.293514	3E-15		0.019567287	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1479	chr6	117257694	117257695	rs664846	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6q22.1	RFX6	rs664846-A	0.293529	5E-10		0.015396995	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1479	chr6	117259776	117259777	rs1761880	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	200,622 European ancestry individuals	NA	6q22.1	RFX6	rs1761880-A	0.6765	7E-7		0.0095	[0.0058-0.0132] unit increase	Affymetrix, Illumina [34064007] (imputed)	N
1479	chr6	117260778	117260779	rs1741663	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	6q22.1		rs1741663-?	NR	5E-12				NR [~ 8900000] (imputed)	N
1479	chr6	117263288	117263289	rs1761875	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q22.1	NR	rs1761875-T	0.780382	9E-15				Affymetrix, Illumina [19872809] (imputed)	N
1479	chr6	117264984	117264985	rs1761870	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	6q22.1	RFX6, VGLL2	rs1761870-G		4E-9		0.175	unit increase	Affymetrix [at least 2696785] (imputed)	N
1479	chr6	117264989	117264990	rs1741652	33290408	Ray D	2020-12-08	PLoS Genet	A powerful method for pleiotropic analysis under composite null hypothesis identifies novel shared loci between Type 2 Diabetes and Prostate Cancer.	Type 2 diabetes or prostate cancer (pleiotropy)	62,892 European ancestry T2D cases, 79,194 European ancestry PrCa cases, 659,536 European ancestry controls	NA	6q22.1	RFX6	rs1741652-?		4E-8				Illumina [5041948] (imputed)	N
1479	chr6	117274998	117274999	rs1741684	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	6q22.1		rs1741684-T	0.815137	5E-9		0.016665163	[0.011-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1479	chr6	117280311	117280312	rs1741672	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	6q22.1		rs1741672-T	NR	7E-15		0.0185	[0.014-0.023] unit increase	Affymetrix, Illumina [20535873] (imputed)	N
1479	chr6	117282114	117282115	rs783653	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum total protein level	113,509 Japanese ancestry individuals	NA	6q22.1	RFX6, VGLL2	rs783653-?	NR	2E-8		0.03509	[0.023-0.047] unit decrease novel	Illumina [6108953] (imputed)	N
1479	chr6	117286219	117286220	rs783646	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	6q22.1	NR	rs783646-C	0.816656	2E-13		0.018804	[0.014-0.024] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
1479	chr6	117287842	117287843	rs72951719	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	6q22.1	RFX6, VGLL2	rs72951719-T	0.053278417	5E-6		1.1387022	[1.076775734-1.204190138]	Illumina [10439017] (imputed)	N
1480	chr6	117321137	117321138	rs142529807	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	UBA7182 sp002491115 abundance in stool	5,959 Finnish ancestry individuals	NA	6q22.1		rs142529807-T	0.0147034	3E-8		0.11753	[0.076-0.159] unit increase	Illumina [7980478] (imputed)	N
1480	chr6	117332599	117332600	rs144046596	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	6q22.1	Intergenic	rs144046596-T	0.985	6E-7	(AA)	0.08	unit increase	Illumina [NR] (imputed)	N
1480	chr6	117391878	117391879	rs526318	32279069	Rovira P	2020-04-12	Neuropsychopharmacology	Shared genetic background between children and adults with attention deficit/hyperactivity disorder.	Attention deficit hyperactivity disorder (childhood)	10,617 European ancestry cases, 16,537 European ancestry controls	NA	6q22.1	NR	rs526318-T	0.54	3E-6		1.1	[1.06-1.15]	Illumina [~ 1072558] (imputed)	N
1481	chr6	117453328	117453329	rs142794624	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (positive Marder score)	1,390 European ancestry cases	NA	6q22.1		rs142794624-?	NR	8E-6	(MLM)	0.4962775	[0.28-0.71] unit increase	Illumina [~ 9000000] (imputed)	N
1481	chr6	117453328	117453329	rs142794624	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (PANSS score)	1,390 European ancestry individuals	NA	6q22.1		rs142794624-?	NR	4E-6	(MLM)	0.5155792	[0.3-0.73] unit increase	Illumina [~ 9000000] (imputed)	N
1481	chr6	117453403	117453404	rs2819598	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Creatine kinase levels	106,080 Japanese ancestry individuals	NA	6q22.1	NR	rs2819598-?	NR	3E-8		0.02725	[0.018-0.037] unit decrease novel	Illumina [6108953] (imputed)	N
1481	chr6	117462039	117462040	rs509067	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	6q22.1		rs509067-C	NR	3E-31		0.0155	[0.013-0.018] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1481	chr6	117471950	117471951	rs59365541	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.1	VGLL2	rs59365541-A	0.618688	5E-14	(-16 ms)	0.0413414	[0.03-0.053] unit decrease	Affymetrix [10000000] (imputed)	N
1481	chr6	117471950	117471951	rs59365541	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.1	VGLL2	rs59365541-A	0.618688	2E-8	(8 ms)	0.0319956	[0.021-0.043] unit decrease	Affymetrix [10000000] (imputed)	N
1481	chr6	117471950	117471951	rs59365541	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.1	VGLL2	rs59365541-A	0.618688	1E-9	(10 ms)	0.0350176	[0.024-0.046] unit decrease	Affymetrix [10000000] (imputed)	N
1481	chr6	117479234	117479236	rs371362985	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6q22.1	RNA5SP214	rs371362985-T	NR	2E-8		0.0177532	[0.012-0.024] unit decrease	Affymetrix [323123] (imputed)	N
1481	chr6	117490663	117490664	rs1405212	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	6q22.1	intergenic	rs1405212-T	0.3721	1E-21		0.0187	[0.015-0.022] unit decrease	Affymetrix [18391927] (imputed)	N
1481	chr6	117501987	117501988	rs9372475	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	6q22.1	RFX6, VGLL2	rs9372475-T	0.37	4E-14		7.56	z-score increase	Affymetrix [4314223] (imputed)	N
1481	chr6	117505881	117505882	rs7452125	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	6q22.1	RFX6, VGLL2	rs7452125-?	NR	8E-11		0.020188069	[0.014-0.026] unit increase	Illumina [27896057] (imputed)	N
1481	chr6	117506041	117506042	rs200564310	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	6q22.1		rs200564310-G	NR	4E-8		0.0126	[0.0081-0.0171] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
1481	chr6	117506041	117506042	rs200564310	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	163,835 East Asian ancestry individuals	NA	6q22.1		rs200564310-G	0.25864	3E-8		0.0201973	[0.013-0.027] unit decrease	Illumina [13479178] (imputed)	N
1481	chr6	117506407	117506408	rs150115323	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	6q22.1	NR	rs150115323-G	0.37166999999999994	9E-12		0.00527307	[0.0036-0.007] unit increase	Affymetrix [16582909] (imputed)	N
1481	chr6	117506407	117506408	rs150115323	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	6q22.1	NR	rs150115323-G	0.37203600000000003	4E-9		0.00638301	[0.0039-0.0089] unit increase	Affymetrix [16585854] (imputed)	N
1481	chr6	117506407	117506408	rs150115323	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	6q22.1	NR	rs150115323-G	0.37166999999999994	3E-6		0.00367903	[0.0018-0.0056] unit increase	Affymetrix [16582965] (imputed)	N
1481	chr6	117506407	117506408	rs150115323	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6q22.1		rs150115323-?	NR	5E-55				NR [~ 8900000] (imputed)	N
1481	chr6	117507981	117507982	rs200889152	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Inguinal hernia	16,725 European ancestry cases, 428,356 European ancestry controls, 1,664 East Asian ancestry cases, 177,062 East Asian ancestry controls	NA	6q22.1		rs200889152-C	NR	1E-10		0.0757	[0.053-0.099] unit increase	Affymetrix, Illumina [25841416] (imputed)	N
1481	chr6	117507981	117507982	rs200889152	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6q22.1	VGLL2	rs200889152-C	NR	1E-13		0.0215821	[0.016-0.027] unit decrease	Affymetrix [321016] (imputed)	N
1481	chr6	117522155	117522156	rs961764	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	6q22.1	VGLL2	rs961764-C	0.42	1E-11		0.024	[NR] unit decrease	Affymetrix, Illumina [2834208] (imputed)	N
1481	chr6	117523470	117523471	rs7753558	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	6q22.1	VGLL2	rs7753558-C	0.36595	5E-10		0.00908761	[0.0062-0.012] unit increase	Affymetrix [12370749]	N
1481	chr6	117523670	117523671	rs2693560	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	6q22.1		rs2693560-G	NR	3E-15		0.0161	[0.012-0.02] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
1481	chr6	117523670	117523671	rs2693560	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Creatine kinase levels	106,080 Japanese ancestry individuals	NA	6q22.1	RFX6, VGLL2	rs2693560-?	NR	6E-15		0.0377	[0.028-0.047] unit decrease novel	Illumina [6108953] (imputed)	N
1481	chr6	117524037	117524038	rs7740152	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6q22.1	VGLL2	rs7740152-T	NR	2E-9		0.0192079	[0.013-0.025] unit decrease	Affymetrix [321016] (imputed)	N
1481	chr6	117525984	117525985	rs12192632	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	6q22.1		rs12192632-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1481	chr6	117529849	117529850	rs11153653	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atrial fibrillation/atrial flutter	29,212 European ancestry cases, 400,539 European ancestry controls, 4,150 East Asian ancestry cases, 155,540 East Asian ancestry controls	NA	6q22.1		rs11153653-C	NR	2E-8		0.0569	[0.037-0.077] unit increase	Affymetrix, Illumina [25830072] (imputed)	N
1481	chr6	117543387	117543388	rs4946246	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	6q22.1		rs4946246-T	0.752171	1E-9		0.014935	[0.01-0.02] unit decrease	Illumina [13479295] (imputed)	N
1481	chr6	117543387	117543388	rs4946246	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	6q22.1	VGLL2, ROS1, GOPC, RNA5SP214	rs4946246-T	NR	2E-6	(sleep efficiency, weekdays)	2.116	[1.25-2.99] unit decrease	Affymetrix [7141204] (imputed)	N
1481	chr6	117552468	117552469	rs9385002	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6q22.1	VGLL2	rs9385002-T	NR	6E-10		0.0225757	[0.015-0.03] unit decrease	Affymetrix [321114] (imputed)	N
1481	chr6	117565743	117565744	rs654861	28608620	Coleman JRI	2017-06-13	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of facial emotion recognition in children and association with polygenic risk for mental health disorders.	Facial emotion recognition (fearful faces)	4,097 European ancestry individuals	NA	6q22.1	VGLL2, ROS1, GOPC	rs654861-A	0.968	1E-6		4.86	z score increase	Illumina [2487351] (imputed)	N
1482	chr6	117573503	117573504	rs418038	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-hip ratio	1,254 whole genome sequenced European ancestry individuals, 3,071 whole genome sequenced individuals, 29,723 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,053 Mylopotamos (founder/genetic isolate) individuals, 879 Pomak (founder/genetic isolate) individuals	206,053 European ancestry individuals	6q22.1	VGLL2	rs418038-A	0.8616	1E-6		0.0672	[0.04-0.094] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1482	chr6	117592486	117592487	rs210977	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.1	VGLL2	rs210977-G	0.883013	4E-10	(136 ms)	0.0540171	[0.037-0.071] unit decrease	Affymetrix [10000000] (imputed)	N
1482	chr6	117592486	117592487	rs210977	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.1	VGLL2	rs210977-G	0.883013	2E-8	(144 ms)	0.0484623	[0.031-0.066] unit decrease	Affymetrix [10000000] (imputed)	N
1482	chr6	117592486	117592487	rs210977	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.1	VGLL2	rs210977-G	0.883013	1E-8	(134 ms)	0.0491969	[0.032-0.067] unit decrease	Affymetrix [10000000] (imputed)	N
1482	chr6	117605990	117605991	rs13201929	23049088	Meng W	2012-10-09	Invest Ophthalmol Vis Sci	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		6q22.1	intergenic	rs13201929-?	0.121	3E-6			[NR]	Affymetrix, Illumina [152234]	N
1482	chr6	117624548	117624549	rs210967	31092817	Lees JA	2019-05-15	Nat Commun	Joint sequencing of human and pathogen genomes reveals the genetics of pneumococcal meningitis.	Pneumococcal meningitis	732 European and unknown ancestry cases, 4,836 European and unknown ancestry controls	NA	6q22.1	ROS1	rs210967-?	NR	9E-7		1.2987013	NR	Illumina [6800000] (imputed)	N
1482	chr6	117624597	117624598	rs210966	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Creatine kinase levels	106,080 Japanese ancestry individuals	NA	6q22.1	NR	rs210966-?	NR	2E-11		0.03117	[0.022-0.04] unit decrease novel	Illumina [6108953] (imputed)	N
1482	chr6	117629662	117629663	rs663474	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.1	ROS1, GOPC	rs663474-T	0.292842	9E-9	(240 ms)	0.0337118	[0.021-0.046] unit increase	Affymetrix [10000000] (imputed)	N
1482	chr6	117629662	117629663	rs663474	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.1	ROS1, GOPC	rs663474-T	0.292842	9E-34	(142 ms)	0.0715896	[0.059-0.084] unit increase	Affymetrix [10000000] (imputed)	N
1482	chr6	117629662	117629663	rs663474	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.1	ROS1, GOPC	rs663474-T	0.292842	9E-33	(146 ms)	0.0698082	[0.058-0.082] unit increase	Affymetrix [10000000] (imputed)	N
1482	chr6	117629662	117629663	rs663474	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.1	ROS1, GOPC	rs663474-T	0.292842	9E-28	(154 ms)	0.0643073	[0.052-0.076] unit increase	Affymetrix [10000000] (imputed)	N
1482	chr6	117629662	117629663	rs663474	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.1	ROS1, GOPC	rs663474-T	0.292842	9E-21	(190 ms)	0.0555856	[0.043-0.068] unit increase	Affymetrix [10000000] (imputed)	N
1482	chr6	117629662	117629663	rs663474	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.1	ROS1, GOPC	rs663474-T	0.292842	8E-9	(242 ms)	0.0339373	[0.022-0.046] unit increase	Affymetrix [10000000] (imputed)	N
1482	chr6	117629662	117629663	rs663474	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.1	ROS1, GOPC	rs663474-T	0.292842	8E-24	(170 ms)	0.0589451	[0.047-0.071] unit increase	Affymetrix [10000000] (imputed)	N
1482	chr6	117629662	117629663	rs663474	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.1	ROS1, GOPC	rs663474-T	0.292842	7E-26	(176 ms)	0.0619171	[0.05-0.074] unit increase	Affymetrix [10000000] (imputed)	N
1482	chr6	117629662	117629663	rs663474	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.1	ROS1, GOPC	rs663474-T	0.292842	7E-26	(168 ms)	0.0623161	[0.05-0.074] unit increase	Affymetrix [10000000] (imputed)	N
1482	chr6	117629662	117629663	rs663474	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.1	ROS1, GOPC	rs663474-T	0.292842	7E-19	(194 ms)	0.052735	[0.041-0.065] unit increase	Affymetrix [10000000] (imputed)	N
1482	chr6	117629662	117629663	rs663474	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.1	ROS1, GOPC	rs663474-T	0.292842	7E-13	(224 ms)	0.0422997	[0.03-0.055] unit increase	Affymetrix [10000000] (imputed)	N
1482	chr6	117629662	117629663	rs663474	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.1	ROS1, GOPC	rs663474-T	0.292842	7E-13	(222 ms)	0.0421966	[0.03-0.054] unit increase	Affymetrix [10000000] (imputed)	N
1482	chr6	117629662	117629663	rs663474	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.1	ROS1, GOPC	rs663474-T	0.292842	7E-12	(226 ms)	0.0405191	[0.028-0.053] unit increase	Affymetrix [10000000] (imputed)	N
1482	chr6	117629662	117629663	rs663474	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.1	ROS1, GOPC	rs663474-T	0.292842	6E-28	(166 ms)	0.0653659	[0.053-0.077] unit increase	Affymetrix [10000000] (imputed)	N
1482	chr6	117629662	117629663	rs663474	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.1	ROS1, GOPC	rs663474-T	0.292842	6E-20	(192 ms)	0.0541898	[0.042-0.066] unit increase	Affymetrix [10000000] (imputed)	N
1482	chr6	117629662	117629663	rs663474	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.1	ROS1, GOPC	rs663474-T	0.292842	6E-19	(96 ms)	0.0526367	[0.04-0.065] unit increase	Affymetrix [10000000] (imputed)	N
1482	chr6	117629662	117629663	rs663474	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.1	ROS1, GOPC	rs663474-T	0.292842	6E-17	(204 ms)	0.0488669	[0.037-0.061] unit increase	Affymetrix [10000000] (imputed)	N
1482	chr6	117629662	117629663	rs663474	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.1	ROS1, GOPC	rs663474-T	0.292842	6E-16	(200 ms)	0.0477155	[0.036-0.06] unit increase	Affymetrix [10000000] (imputed)	N
1482	chr6	117629662	117629663	rs663474	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.1	ROS1, GOPC	rs663474-T	0.292842	6E-14	(214 ms)	0.0443515	[0.032-0.057] unit increase	Affymetrix [10000000] (imputed)	N
1482	chr6	117629662	117629663	rs663474	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.1	ROS1, GOPC	rs663474-T	0.292842	6E-13	(220 ms)	0.0424302	[0.03-0.055] unit increase	Affymetrix [10000000] (imputed)	N
1482	chr6	117629662	117629663	rs663474	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.1	ROS1, GOPC	rs663474-T	0.292842	5E-30	(140 ms)	0.0671049	[0.055-0.079] unit increase	Affymetrix [10000000] (imputed)	N
1482	chr6	117629662	117629663	rs663474	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.1	ROS1, GOPC	rs663474-T	0.292842	5E-26	(174 ms)	0.0624457	[0.05-0.075] unit increase	Affymetrix [10000000] (imputed)	N
1482	chr6	117629662	117629663	rs663474	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.1	ROS1, GOPC	rs663474-T	0.292842	5E-20	(102 ms)	0.0539771	[0.042-0.066] unit increase	Affymetrix [10000000] (imputed)	N
1482	chr6	117629662	117629663	rs663474	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.1	ROS1, GOPC	rs663474-T	0.292842	5E-10	(236 ms)	0.0366084	[0.024-0.049] unit increase	Affymetrix [10000000] (imputed)	N
1482	chr6	117629662	117629663	rs663474	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.1	ROS1, GOPC	rs663474-T	0.292842	4E-22	(106 ms)	0.0579127	[0.046-0.07] unit increase	Affymetrix [10000000] (imputed)	N
1482	chr6	117629662	117629663	rs663474	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.1	ROS1, GOPC	rs663474-T	0.292842	4E-21	(104 ms)	0.0559967	[0.044-0.068] unit increase	Affymetrix [10000000] (imputed)	N
1482	chr6	117629662	117629663	rs663474	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.1	ROS1, GOPC	rs663474-T	0.292842	4E-18	(196 ms)	0.0514911	[0.039-0.064] unit increase	Affymetrix [10000000] (imputed)	N
1482	chr6	117629662	117629663	rs663474	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.1	ROS1, GOPC	rs663474-T	0.292842	3E-34	(144 ms)	0.0714772	[0.059-0.084] unit increase	Affymetrix [10000000] (imputed)	N
1482	chr6	117629662	117629663	rs663474	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.1	ROS1, GOPC	rs663474-T	0.292842	3E-32	(148 ms)	0.0690132	[0.057-0.081] unit increase	Affymetrix [10000000] (imputed)	N
1482	chr6	117629662	117629663	rs663474	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.1	ROS1, GOPC	rs663474-T	0.292842	3E-28	(132 ms)	0.0653395	[0.053-0.077] unit increase	Affymetrix [10000000] (imputed)	N
1482	chr6	117629662	117629663	rs663474	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.1	ROS1, GOPC	rs663474-T	0.292842	3E-22	(188 ms)	0.0571027	[0.045-0.069] unit increase	Affymetrix [10000000] (imputed)	N
1482	chr6	117629662	117629663	rs663474	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.1	ROS1, GOPC	rs663474-T	0.292842	3E-19	(98 ms)	0.0525421	[0.04-0.065] unit increase	Affymetrix [10000000] (imputed)	N
1482	chr6	117629662	117629663	rs663474	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.1	ROS1, GOPC	rs663474-T	0.292842	3E-11	(232 ms)	0.0390719	[0.027-0.051] unit increase	Affymetrix [10000000] (imputed)	N
1482	chr6	117629662	117629663	rs663474	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.1	ROS1, GOPC	rs663474-T	0.292842	3E-11	(228 ms)	0.0392662	[0.027-0.052] unit increase	Affymetrix [10000000] (imputed)	N
1482	chr6	117629662	117629663	rs663474	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.1	ROS1, GOPC	rs663474-T	0.292842	2E-9	(238 ms)	0.0353418	[0.023-0.048] unit increase	Affymetrix [10000000] (imputed)	N
1482	chr6	117629662	117629663	rs663474	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.1	ROS1, GOPC	rs663474-T	0.292842	2E-8	(244 ms)	0.0336261	[0.021-0.046] unit increase	Affymetrix [10000000] (imputed)	N
1482	chr6	117629662	117629663	rs663474	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.1	ROS1, GOPC	rs663474-T	0.292842	2E-29	(126 ms)	0.0674961	[0.055-0.08] unit increase	Affymetrix [10000000] (imputed)	N
1482	chr6	117629662	117629663	rs663474	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.1	ROS1, GOPC	rs663474-T	0.292842	2E-25	(130 ms)	0.0614466	[0.049-0.074] unit increase	Affymetrix [10000000] (imputed)	N
1482	chr6	117629662	117629663	rs663474	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.1	ROS1, GOPC	rs663474-T	0.292842	2E-23	(182 ms)	0.0588794	[0.047-0.071] unit increase	Affymetrix [10000000] (imputed)	N
1482	chr6	117629662	117629663	rs663474	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.1	ROS1, GOPC	rs663474-T	0.292842	2E-22	(180 ms)	0.0577268	[0.046-0.07] unit increase	Affymetrix [10000000] (imputed)	N
1482	chr6	117629662	117629663	rs663474	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.1	ROS1, GOPC	rs663474-T	0.292842	2E-16	(206 ms)	0.0479176	[0.036-0.06] unit increase	Affymetrix [10000000] (imputed)	N
1482	chr6	117629662	117629663	rs663474	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.1	ROS1, GOPC	rs663474-T	0.292842	2E-16	(202 ms)	0.0486385	[0.036-0.061] unit increase	Affymetrix [10000000] (imputed)	N
1482	chr6	117629662	117629663	rs663474	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.1	ROS1, GOPC	rs663474-T	0.292842	2E-16	(198 ms)	0.0488592	[0.037-0.061] unit increase	Affymetrix [10000000] (imputed)	N
1482	chr6	117629662	117629663	rs663474	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.1	ROS1, GOPC	rs663474-T	0.292842	2E-15	(210 ms)	0.0463623	[0.034-0.059] unit increase	Affymetrix [10000000] (imputed)	N
1482	chr6	117629662	117629663	rs663474	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.1	ROS1, GOPC	rs663474-T	0.292842	2E-13	(218 ms)	0.0432415	[0.031-0.055] unit increase	Affymetrix [10000000] (imputed)	N
1482	chr6	117629662	117629663	rs663474	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.1	ROS1, GOPC	rs663474-T	0.292842	2E-11	(230 ms)	0.0395619	[0.027-0.052] unit increase	Affymetrix [10000000] (imputed)	N
1482	chr6	117629662	117629663	rs663474	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.1	ROS1, GOPC	rs663474-T	0.292842	2E-10	(234 ms)	0.0373563	[0.025-0.05] unit increase	Affymetrix [10000000] (imputed)	N
1482	chr6	117629662	117629663	rs663474	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.1	ROS1, GOPC	rs663474-T	0.292842	1E-27	(124 ms)	0.0650437	[0.053-0.077] unit increase	Affymetrix [10000000] (imputed)	N
1482	chr6	117629662	117629663	rs663474	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.1	ROS1, GOPC	rs663474-T	0.292842	1E-24	(184 ms)	0.0597288	[0.048-0.072] unit increase	Affymetrix [10000000] (imputed)	N
1482	chr6	117629662	117629663	rs663474	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.1	ROS1, GOPC	rs663474-T	0.292842	1E-24	(172 ms)	0.0599621	[0.048-0.072] unit increase	Affymetrix [10000000] (imputed)	N
1482	chr6	117629662	117629663	rs663474	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.1	ROS1, GOPC	rs663474-T	0.292842	1E-23	(186 ms)	0.0587128	[0.047-0.071] unit increase	Affymetrix [10000000] (imputed)	N
1482	chr6	117629662	117629663	rs663474	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.1	ROS1, GOPC	rs663474-T	0.292842	1E-19	(94 ms)	0.0544276	[0.042-0.067] unit increase	Affymetrix [10000000] (imputed)	N
1482	chr6	117629662	117629663	rs663474	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.1	ROS1, GOPC	rs663474-T	0.292842	1E-19	(100 ms)	0.0529107	[0.041-0.065] unit increase	Affymetrix [10000000] (imputed)	N
1482	chr6	117629662	117629663	rs663474	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.1	ROS1, GOPC	rs663474-T	0.292842	1E-15	(208 ms)	0.0467744	[0.035-0.059] unit increase	Affymetrix [10000000] (imputed)	N
1482	chr6	117629662	117629663	rs663474	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.1	ROS1, GOPC	rs663474-T	0.292842	1E-14	(212 ms)	0.0454868	[0.033-0.058] unit increase	Affymetrix [10000000] (imputed)	N
1482	chr6	117629662	117629663	rs663474	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.1	ROS1, GOPC	rs663474-T	0.292842	1E-13	(216 ms)	0.0436341	[0.031-0.056] unit increase	Affymetrix [10000000] (imputed)	N
1483	chr6	117730818	117730819	rs2273601	23459443	Avery CL	2013-03-05	Pharmacogenomics J	Drug-gene interactions and the search for missing heritability: a cross-sectional pharmacogenomics study of the QT interval.	QT interval (drug interaction)	33,781 European ancestry individuals	NA	6q22.1	ROS1	rs2273601-A	0.23	8E-6	(UAZ Cert)			Affymetrix, Illumina [~ 2500000] (imputed)	N
1483	chr6	117745662	117745663	rs6913494	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	6q22.1	NR	rs6913494-?	NR	9E-7				Affymetrix [NR]	N
1483	chr6	117753833	117753834	rs36111427	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Time-dependent creatinine clearance change response to tenofovir treatment in HIV infection (time and treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	6q22.1	NR	rs36111427-?		9E-6	(Hispanic)			Illumina [~ 5140000] (imputed)	N
1483	chr6	117771276	117771277	rs17635492	23478653	Han JY	2013-03-12	Pharmacogenomics J	A genome-wide association study of survival in small-cell lung cancer patients treated with irinotecan plus cisplatin chemotherapy.	Response to irinotecan and platinum-based chemotherapy in non-small-cell lung cancer	139 individuals	NA	6q22.1	DCBLD1	rs17635492-?	NR	4E-7	(Dominant model)	7.6	[3.50-16.70]	Affymetrix [334127]	N
1483	chr6	117780157	117780158	rs2180811	33888516	Zheng T	2021-04-22	Gut	Genome-wide analysis of 944 133 individuals provides insights into the etiology of haemorrhoidal disease.	Haemorrhoidal disease	218,920 European ancestry cases, 725,213 European ancestry controls	NA	6q22.1	DCBLD1	rs2180811-?	0.4831	2E-12		1.03	[1.02-1.04]	Affymetrix, Illumina [8494288] (imputed)	N
1483	chr6	117781275	117781276	rs4946256	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lung cancer	4,444 East Asian ancestry cases, 174,282 East Asian ancestry controls	NA	6q22.1		rs4946256-C	0.480729597	1E-11		0.14846595	[0.11-0.19] unit decrease	Illumina [13429980] (imputed)	N
1483	chr6	117781275	117781276	rs4946256	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	6q22.1		rs4946256-?	NR	6E-11				NR [~ 8900000] (imputed)	N
1483	chr6	117784658	117784658	rs5879422	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Non-small cell lung cancer	27,120 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	6q22.1	NR	rs5879422-T	NR	4E-9		1.08	[1.05-1.11]	NR [NR] (imputed)	N
1483	chr6	117784658	117784658	rs5879422	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Lung adenocarcinoma	15,581 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	6q22.1	NR	rs5879422-T	NR	9E-12		1.11	[1.08-1.14]	NR [NR] (imputed)	N
1483	chr6	117784658	117784658	rs5879422	31326317	Dai J	2019-07-17	Lancet Respir Med	Identification of risk loci and a polygenic risk score for lung cancer: a large-scale prospective cohort study in Chinese populations.	Non-small cell lung cancer	13,327 Chinese ancestry cases, 13,793 European ancestry cases, 13,328 Chinese ancestry controls, 14,027 European ancestry controls	NA	6q22.1	DCBLD1	rs5879422-T	0.51	4E-9		1.08	[1.05-1.11]	Illumina [~ 11000000] (imputed)	N
1483	chr6	117786179	117786180	rs9387478	31326317	Dai J	2019-07-17	Lancet Respir Med	Identification of risk loci and a polygenic risk score for lung cancer: a large-scale prospective cohort study in Chinese populations.	Lung adenocarcinoma	8,762 Chinese ancestry cases, 6,819 European ancestry cases, 13,328 Chinese ancestry controls, 14,027 European ancestry controls	NA	6q22.1	NR	rs9387478-C	0.5	6E-8	(East Asian)	1.12	[1.08-1.17]	Illumina [~ 11000000] (imputed)	N
1483	chr6	117786179	117786180	rs9387478	23143601	Lan Q	2012-11-11	Nat Genet	Genome-wide association analysis identifies new lung cancer susceptibility loci in never-smoking women in Asia.	Lung cancer	5,510 East Asian ancestry cases, 4,544 East Asian ancestry controls	1,099 East Asian ancestry cases, 2,913 East Asian ancestry controls	6q22.1	ROS1, DCBLD1	rs9387478-C	0.50	4E-10		1.18	[1.11-1.23]	Illumina [596032]	N
1483	chr6	117792611	117792612	rs9387479	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung adenocarcinoma	11,273 European ancestry cases,  55,483 European ancestry controls	NA	6q22.1	ROS1, DCBLD1	rs9387479-T	0.507803726	7E-8		1.0919205	[1.06-1.13]	Illumina [10439017] (imputed)	N
1483	chr6	117804796	117804797	rs62433108	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	6q22.1	ROS1, DCBLD1	rs62433108-G	0.281	9E-7		1.0620446		NR [9372253] (imputed)	N
1483	chr6	117814166	117814167	rs2018055	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Diastolic blood pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	6q22.1	chr6mb117	rs2018055-C	0.239089735	8E-7		0.1557	[0.094-0.217] unit decrease	Affymetrix [~ 9800000] (imputed)	N
1483	chr6	117816351	117816351	rs35189230	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	6q22.1	DCBLD1	rs35189230-G		1E-8		0.239	unit increase	Affymetrix [at least 2696785] (imputed)	N
1483	chr6	117819356	117819357	rs2057314	23266556	Peters U	2012-12-21	Gastroenterology	Identification of Genetic Susceptibility Loci for Colorectal Tumors in a Genome-Wide Meta-analysis.	Colorectal cancer	12,696 European ancestry colorectal tumor cases, 15,113 European ancestry controls	958 European ancestry colorectal tumor cases, 909 European ancestry controls, up to 2,098 East Asian ancestry colorectal tumor cases, up to 5,749 East Asian ancestry controls	6q22.1	DCBLD1, GOPC	rs2057314-?	0.50	3E-6		1.08	[1.04-1.11]	Affymetrix, Illumina [2708280] (imputed)	N
1483	chr6	117822992	117822993	rs4946260	26151821	Schumacher FR	2015-07-07	Nat Commun	Genome-wide association study of colorectal cancer identifies six new susceptibility loci.	Colorectal cancer	18,299 European ancestry cases, 19,656 European ancestry controls	4,725 East Asian ancestry cases, 9,969 East Asian ancestry controls	6q22.1	NR	rs4946260-T	0.53	6E-8		1.07	[1.05-1.10]	Affymetrix, Illumina [~ 2500000] (imputed)	N
1483	chr6	117822992	117822993	rs4946260	26151821	Schumacher FR	2015-07-07	Nat Commun	Genome-wide association study of colorectal cancer identifies six new susceptibility loci.	Colorectal cancer	18,299 European ancestry cases, 19,656 European ancestry controls	4,725 East Asian ancestry cases, 9,969 East Asian ancestry controls	6q22.1	NR	rs4946260-T	0.53	5E-7	(EA)	1.08	[1.05-1.11]	Affymetrix, Illumina [~ 2500000] (imputed)	N
1484	chr6	117844071	117844072	rs210648	22566634	Benjamin DJ	2012-05-07	Proc Natl Acad Sci U S A	The genetic architecture of economic and political preferences.	Economic and political preferences	9,617 European ancestry individuals	NA	6q22.1	DCBLD1	rs210648-G	NR	2E-6	(Risk)	0.122	[0.073-0.171] unit decrease	Illumina [628922]	N
1484	chr6	117855910	117855911	rs117533208	33381925	Buchanan VL	2020-12-30	Pediatr Obes	Genome-wide association study identifying novel variant for fasting insulin and allelic heterogeneity in known glycemic loci in Chilean adolescents: The Santiago Longitudinal Study.	Fasting glucose	543 Chilean individuals	NA	6q22.1	DCBLD1	rs117533208-C	0.02	4E-6		10.537	[6.05-15.02] unit increase	Illumina [NR] (imputed)	N
1484	chr6	117863263	117863264	rs210618	34737425	Mansour Aly D	2021-11-04	Nat Genet	Genome-wide association analyses highlight etiological differences underlying newly defined subtypes of diabetes.	Mild obesity-related type 2 diabetes	1,374 Scandinavian ancestry cases, 2,744 Scandinavian ancestry controls	NA	6q22.1	DCBLD1, GOPC	rs210618-A	0.279144	6E-6		0.785	[0.707 - 0.872]	Illumina [5400100] (imputed)	N
1484	chr6	117869490	117869491	rs210621	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6q22.1	NR	rs210621-?	NR	2E-12				Affymetrix [~ 8270000] (imputed)	N
1484	chr6	117869490	117869491	rs210621	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6q22.1		rs210621-?	NR	4E-23				NR [~ 8900000] (imputed)	N
1484	chr6	117871547	117871548	rs10457315	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	6q22.1		rs10457315-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1484	chr6	117871835	117871836	rs9285425	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	6q22.1	DCBLD1	rs9285425-G	0.5	2E-8		1.14	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
1484	chr6	117880341	117880342	rs210632	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	6q22.1	GOPC	rs210632-A	0.25	3E-8	(EA)	1.05	[1.03-1.07]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1484	chr6	117919374	117919375	rs9401013	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	6q22.1		rs9401013-A	NR	2E-10		0.0145	[0.01-0.019] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1484	chr6	117937493	117937494	rs10457318	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	6q22.1		rs10457318-T	NR	1E-13		0.0159	[0.012-0.02] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
1485	chr6	117989144	117989145	rs9401025	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	6q22.1	NUS1	rs9401025-C	0.5712	9E-9		0.203	[0.13-0.27] mmHg increase	Affymetrix [NR] (imputed)	N
1485	chr6	117996630	117996631	rs80196932	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	46,511 Asian ancestry cases, 169,776 Asian ancestry controls	NA	6q22.1	NR	rs80196932-C	0.247	4E-12		0.071	[0.051-0.091] unit decrease	Affymetrix, Illumina [1077427] (imputed)	N
1485	chr6	117996630	117996631	rs80196932	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	6q22.1	NR	rs80196932-C	0.1828	1E-19		0.0479	[0.038-0.058] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1485	chr6	117996630	117996631	rs80196932	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	6q22.1	NUS1	rs80196932-T	0.786	8E-13		1.06	[1.04-1.08]	Affymetrix, Illumina [11800000] (imputed)	N
1485	chr6	117996630	117996631	rs80196932	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	6q22.1	NUS1	rs80196932-T	0.75	8E-12		1.07	1.05-1.10	Illumina [12557761] (imputed)	N
1485	chr6	118011722	118011723	rs72951506	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	6q22.1		rs72951506-T	NR	6E-10		0.0577	[0.039-0.076] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1485	chr6	118011722	118011723	rs72951506	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	6q22.1	NR	rs72951506-C	0.8521	9E-11		0.0423	[0.03-0.055] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1485	chr6	118011722	118011723	rs72951506	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	6q22.1		rs72951506-T	0.251669467	3E-9		0.9433856	[0.925435688-0.961683649]	Illumina [8919992] (imputed)	N
1485	chr6	118030237	118030238	rs2498589	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6q22.1	NUS1	rs2498589-T	0.153	2E-16	(Inducible T-cell costimulator, ICOS.14084.191.3)	0.28	[0.22-0.34] unit decrease	Affymetrix [10572788] (imputed)	N
1485	chr6	118050840	118050841	rs72951548	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	6q22.1		rs72951548-T	0.245874485	2E-9		0.06582583	[0.044-0.087] unit decrease	Illumina [13429769] (imputed)	N
1485	chr6	118050840	118050841	rs72951548	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	6q22.1		rs72951548-T	NR	1E-15		0.0627	[0.047-0.078] unit decrease	Affymetrix, Illumina [25845091] (imputed)	N
1485	chr6	118057041	118057042	rs7775726	32887874	Saw J	2020-09-04	Nat Commun	Chromosome 1q21.2 and additional loci influence risk of spontaneous coronary artery dissection and myocardial infarction.	Spontaneous coronary artery dissection	up to 243 European ancestry cases, up to 23 East Asian ancestry cases, up to 4,816 European ancestry controls, up to 447 East Asian ancestry controls	up to 149 European ancestry cases, up to 14 East Asian ancestry cases, up to 2,935 European ancestry controls, up to 272 East Asian ancestry controls	6q22.1	NUS1	rs7775726-?	NA	7E-6		1.23	[0.69-1.77] unit increase	Illumina [6690240] (imputed)	N
1486	chr6	118104135	118104136	rs76754339	25763902	Draaken M	2015-03-12	PLoS Genet	Genome-wide association study and meta-analysis identify ISL1 as genome-wide significant susceptibility gene for bladder exstrophy.	Classic bladder exstrophy	208 European ancestry cases, 1,703 European ancestry controls	NA	6q22.1	NR	rs76754339-G	0.016	7E-6		5.7	[2.67-12.18]	Illumina [7261187] (imputed)	N
1489	chr6	118495908	118495909	rs144690690	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (hospitalized covid vs population)	613 European ancestry cases, 680,416 European ancestry controls, 140 Hispanic or Latin American cases, 94,327 Hispanic or Latin American controls, 49 Black or African American cases, 22,410 Black or African American controls	NA	6q22.31		rs144690690-?	NR	1E-6		0.8053994	[0.48-1.13] unit increase	Illumina [9875426] (imputed)	N
1489	chr6	118535982	118535983	rs457162	24952745	Arking DE	2014-06-22	Nat Genet	Genetic association study of QT interval highlights role for calcium signaling pathways in myocardial repolarization.	QT interval	Up to 70,389 European ancestry individuals, up to 672 Orcadian individuals	Up to 33,316 European ancestry individuals	6q22.31	SLC35F1, PLN	rs457162-T	0.059	3E-18		1.85	[1.44-2.26] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1489	chr6	118547038	118547038	rs376054711	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs376054711-C	0.172021	6E-9	(312 ms)	0.0473688	[0.031-0.063] unit decrease	Affymetrix [10000000] (imputed)	N
1489	chr6	118547038	118547038	rs376054711	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs376054711-C	0.172021	6E-9	(304 ms)	0.0467213	[0.031-0.063] unit decrease	Affymetrix [10000000] (imputed)	N
1489	chr6	118547038	118547038	rs376054711	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs376054711-C	0.172021	1E-8	(306 ms)	0.0467451	[0.031-0.063] unit decrease	Affymetrix [10000000] (imputed)	N
1489	chr6	118559657	118559658	rs3951016	30679814	van Setten J	2019-01-24	Eur J Hum Genet	Genome-wide association meta-analysis of 30,000 samples identifies seven novel loci for quantitative ECG traits.	QRS duration	2,177 Erasmus Rucphen Family (founder/genetic isolate) individuals, 23,332 European ancestry individuals	391 Carlantino (founder/genetic isolate) individuals, 981 Friuli Venezia Giulia (founder/genetic isolate) individuals, 30,760 European ancestry individuals, 2,048 African American individuals	6q22.31	SLC35F1	rs3951016-A	0.459	3E-30		1.004	[0.83-1.18] unit decrease	Affymetrix, Illumina [at least 19000000] (imputed)	N
1489	chr6	118559657	118559658	rs3951016	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	6q22.31	SLC35F1, PLN	rs3951016-A	0.459	2E-22		1.07	[1.05-1.08]	Illumina [34740186] (imputed)	N
1489	chr6	118559657	118559658	rs3951016	29769521	Ramirez J	2018-05-16	Nat Commun	Thirty loci identified for heart rate response to exercise and recovery implicate autonomic nervous system.	Resting heart rate	67,062 European ancestry individuals	NA	6q22.31	SCLC35F1	rs3951016-T	0.532036	4E-14		0.485625	[0.36-0.61] unit decrease	Affymetrix [~ 7800000] (imputed)	N
1489	chr6	118559657	118559658	rs3951016	27798624	Eppinga RN	2016-10-31	Nat Genet	Identification of genomic loci associated with resting heart rate and shared genetic predictors with all-cause mortality.	Resting heart rate	127,919 European ancestry individuals, 2,478 Asian ancestry individuals, 1,734 Black individuals, 684 Mixed ancestry individuals, 1,436 individuals	130,795 European ancestry individuals	6q22.31	SCLC35F1, PLN	rs3951016-A	0.47	3E-55		0.5196	[0.45-0.58] unit increase	Affymetrix [19941912] (imputed)	N
1489	chr6	118566186	118566187	rs17079881	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	6q22.31	SLC35F1	rs17079881-G	0.14	4E-16		1.09	[1.07-1.11]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1489	chr6	118572485	118572486	rs9372498	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Diastolic blood pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	6q22.31	SLC35F1	rs9372498-A	0.08	2E-11		0.334	[0.24-0.43] unit increase	Affymetrix [~ 9800000] (imputed)	N
1489	chr6	118574060	118574061	rs281868	28416818	Christophersen IE	2017-04-17	Nat Genet	Large-scale analyses of common and rare variants identify 12 new loci associated with atrial fibrillation.	Atrial fibrillation	15,979 European ancestry cases, 102,776 European ancestry controls.	NA	6q22.31	SLC35F1, PLN	rs281868-G	0.5	1E-8		1.08	[1.05-1.10]	Affymetrix, Illumina [11795432] (imputed)	N
1489	chr6	118574060	118574061	rs281868	20639392	Eijgelsheim M	2010-07-16	Hum Mol Genet	Genome-wide association analysis identifies multiple loci related to resting heart rate.	Resting heart rate	38,991 European ancestry individuals	NA	6q22.31	SLC35F1	rs281868-G	0.50	4E-10		6.3	[4.36-8.24] ms decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1489	chr6	118578042	118578043	rs89107	19584346	Vasan RS	2009-07-08	JAMA	Genetic variants associated with cardiac structure and function: a meta-analysis and replication of genome-wide association data.	Cardiac structure and function	12,612 European ancestry individuals	4,094 European ancestry individuals	6q22.31	C6orf204, SLC35F1, PLN	rs89107-G	0.50	1E-9	(LV internal diastolic dimensions)	0.03	[0.02-0.04] cm decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1489	chr6	118612942	118612943	rs1630266	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs1630266-G		2E-6		0.333	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1489	chr6	118612942	118612943	rs1630266	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs1630266-G		3E-9		0.252	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1489	chr6	118618980	118618981	rs166881	23400010	Del-Aguila JL	2013-02-12	Pharmacogenomics J	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NA	6q22.31	SLC35F1	rs166881-C	0.18	4E-6	(AA-triglyceride response)	22.26	[12.79-31.73] mg/dL decrease	Affymetrix, Illumina [> 2000000] (imputed)	N
1490	chr6	118621077	118621078	rs1761622	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6q22.31		rs1761622-?	NR	6E-9		0.018611	[0.012-0.025] unit decrease	Affymetrix [20259828] (imputed)	N
1490	chr6	118632492	118632493	rs1690667	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	6q22.31		rs1690667-?	NR	4E-10				NR [~ 8900000] (imputed)	N
1490	chr6	118639386	118639387	rs1334489	27890468	van Hulzen KJE	2016-10-18	Biol Psychiatry	Genetic Overlap Between Attention-Deficit/Hyperactivity Disorder and Bipolar Disorder: Evidence From Genome-wide Association Study Meta-analysis.	Bipolar disorder or attention deficit hyperactivity disorder	9,650 European ancestry bipolar disorder cases, 2,950 European ancestry ADHD cases, 1,659 European and unknown ancestry ADHD cases, 16,325 European ancestry controls, 2,942 European and unknown ancestry controls, 2,096 controls	NA	6q22.31	CEP85L	rs1334489-?	NR	6E-8				Affymetrix, Illumina [NR] (imputed)	N
1490	chr6	118639386	118639387	rs1334489	27890468	van Hulzen KJE	2016-10-18	Biol Psychiatry	Genetic Overlap Between Attention-Deficit/Hyperactivity Disorder and Bipolar Disorder: Evidence From Genome-wide Association Study Meta-analysis.	Bipolar disorder (age of onset <21) or attention deficit hyperactivity disorder	5,167 European ancestry bipolar disorder cases, 2,950 European ancestry ADHD cases, 1,659 European and unknown ancestry ADHD cases, 16,325 European ancestry controls, 2,942 European and unknown ancestry controls, 2,096 controls	NA	6q22.31	CEP85L	rs1334489-?		7E-6				Affymetrix, Illumina [NR]	N
1490	chr6	118653074	118653075	rs12210733	24952745	Arking DE	2014-06-22	Nat Genet	Genetic association study of QT interval highlights role for calcium signaling pathways in myocardial repolarization.	QT interval	Up to 70,389 European ancestry individuals, up to 672 Orcadian individuals	Up to 33,316 European ancestry individuals	6q22.31	SLC35F1, PLN	rs12210733-A	0.063	1E-22		2.05	[1.64-2.46] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1490	chr6	118653203	118653204	rs12210810	32386560	Ramirez J	2020-04-29	Am J Hum Genet	Common Genetic Variants Modulate the Electrocardiographic Tpeak-to-Tend Interval.	TPE interval (resting)	71,338 European ancestry individuals	NA	6q22.31	SLC35F1	rs12210810-G	0.945	5E-26		0.118	[0.096-0.14] unit increase	Affymetrix [~ 9000000] (imputed)	N
1490	chr6	118653203	118653204	rs12210810	32386560	Ramirez J	2020-04-29	Am J Hum Genet	Common Genetic Variants Modulate the Electrocardiographic Tpeak-to-Tend Interval.	TPE interval (resting)	71,338 European ancestry individuals	NA	6q22.31	SLC35F1	rs12210810-G	0.945	3E-14	(men)	0.124	[0.093-0.155] unit increase	Affymetrix [~ 9000000] (imputed)	N
1490	chr6	118653203	118653204	rs12210810	32386560	Ramirez J	2020-04-29	Am J Hum Genet	Common Genetic Variants Modulate the Electrocardiographic Tpeak-to-Tend Interval.	TPE interval (resting)	71,338 European ancestry individuals	NA	6q22.31	SLC35F1	rs12210810-G	0.945	2E-13	(women)	0.114	[0.083-0.145] unit increase	Affymetrix [~ 9000000] (imputed)	N
1490	chr6	118653203	118653204	rs12210810	19305409	Pfeufer A	2009-03-22	Nat Genet	Common variants at ten loci modulate the QT interval duration in the QTSCD Study.	QT interval	15,842 European ancestry individuals	up to 13,602 individuals	6q22.31	PLN	rs12210810-C	0.06	2E-17		3.13	[2.29-3.97] ms decrease	Affymetrix, Illumina [2557000] (imputed)	N
1490	chr6	118654307	118654308	rs12212795	33495597	Harper AR	2021-01-25	Nat Genet	Common genetic variants and modifiable risk factors underpin hypertrophic cardiomyopathy susceptibility and expressivity.	Hypertrophic cardiomyopathy	233 African ancestry cases, 122 Hispanic/Latino cases, 70 East Asian ancestry cases, 2,196 European ancestry cases, 138 South Asian ancestry cases, 21 cases, 1,331 African ancestry controls, 170 Hispanic/Latino controls, 333 East Asian ancestry controls, 42,902 European ancestry controls, 1,727 South Asian ancestry controls, 1,023 controls	1,643 European or unknown ancestry cases, 6,628 European or unknown ancestry controls	6q22.31	PLN	rs12212795-G	0.947	3E-10		0.393	[0.27-0.51] unit decrease	Affymetrix [8590397] (imputed)	N
1490	chr6	118654307	118654308	rs12212795	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Hypertrophic cardiomyopathy (MTAG)	1,733 European ancestry cases, 6,628 European ancestry controls	NA	6q22.31	SLC35F1	rs12212795-C	0.0574	2E-10		1.6928271	1.43-2.01	Illumina [6530233] (imputed)	N
1490	chr6	118654307	118654308	rs12212795	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Hypertrophic cardiomyopathy	1,733 European ancestry cases, 6,628 European ancestry controls	2,694 European ancestry cases, 47,486 European ancestry controls	6q22.31	SLC35F1	rs12212795-C	0.0574	1E-18		1.5692534	1.42-1.73	Illumina [6530233] (imputed)	N
1490	chr6	118654373	118654373	rs149379258	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	6q22.31	intergenic	rs149379258-TA	0.8811	2E-9		0.3067	[0.21-0.41] mmHg decrease	Affymetrix [NR] (imputed)	N
1490	chr6	118664853	118664854	rs28436726	33495597	Harper AR	2021-01-25	Nat Genet	Common genetic variants and modifiable risk factors underpin hypertrophic cardiomyopathy susceptibility and expressivity.	Hypertrophic cardiomyopathy (sarcomere negative)	170 African ancestry cases, 93 Hispanic/Latino cases, 52 East Asian ancestry cases, 1,444 European ancestry cases, 94 South Asian ancestry cases, 21 cases, 738 African ancestry controls, 78 Hispanic/Latino controls, 212 East Asian ancestry controls, 24,161 European ancestry controls, 1,132 South Asian ancestry controls, 1,023 controls	NA	6q22.31	PLN	rs28436726-G	0.937595	6E-10		0.437145	[0.3-0.58] unit decrease	Affymetrix [8590397] (imputed)	N
1490	chr6	118664853	118664854	rs28436726	32527199	van Duijvenboden S	2020-06-11	Circ Genom Precis Med	Genetic Basis and Prognostic Value of Exercise QT Dynamics.	QT dynamics during exercise	28,449 European ancestry women, 24,412 European ancestry men	NA	6q22.31		rs28436726-G	0.94	4E-22		0.107	[0.085-0.129] bpm increase	Affymetrix [9800000] (imputed)	N
1490	chr6	118664853	118664854	rs28436726	32527199	van Duijvenboden S	2020-06-11	Circ Genom Precis Med	Genetic Basis and Prognostic Value of Exercise QT Dynamics.	QT dynamics during exercise	28,449 European ancestry women, 24,412 European ancestry men	NA	6q22.31		rs28436726-G	0.939891	4E-11	(female)	0.103636	[0.073-0.134] bpm increase	Affymetrix [9800000] (imputed)	N
1490	chr6	118664853	118664854	rs28436726	32527199	van Duijvenboden S	2020-06-11	Circ Genom Precis Med	Genetic Basis and Prognostic Value of Exercise QT Dynamics.	QT dynamics during exercise	28,449 European ancestry women, 24,412 European ancestry men	NA	6q22.31		rs28436726-G	0.939891	1E-12	(male)	0.123264	[0.089-0.157] bpm increase	Affymetrix [9800000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	34274964	Duijvenboden S	2021-07-19	Hum Mol Genet	Genomic and pleiotropic analyses of resting QT interval identifies novel loci and overlap with atrial electrical disorders.	QT interval	27,612 European ancestry women	NA	6q22.31		rs11153730-T	0.51	6E-28		0.064	[0.052-0.076] unit decrease	Affymetrix [NR]	N
1490	chr6	118667521	118667522	rs11153730	34274964	Duijvenboden S	2021-07-19	Hum Mol Genet	Genomic and pleiotropic analyses of resting QT interval identifies novel loci and overlap with atrial electrical disorders.	QT interval	24,495 European ancestry men	NA	6q22.31		rs11153730-T	0.51	3E-24		0.06	[0.048-0.072] unit decrease	Affymetrix [NR]	N
1490	chr6	118667521	118667522	rs11153730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs11153730-T	0.520014	9E-43	(320 ms)	0.0752356	[0.064-0.086] unit decrease	Affymetrix [10000000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs11153730-T	0.520014	9E-38	(328 ms)	0.0706771	[0.06-0.082] unit decrease	Affymetrix [10000000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs11153730-T	0.520014	9E-29	(8 ms)	0.0618922	[0.051-0.073] unit decrease	Affymetrix [10000000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs11153730-T	0.520014	9E-25	(140 ms)	0.0572929	[0.047-0.068] unit increase	Affymetrix [10000000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs11153730-T	0.520014	9E-20	(106 ms)	0.0516972	[0.041-0.063] unit increase	Affymetrix [10000000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs11153730-T	0.520014	9E-15	(70 ms)	0.0432292	[0.032-0.054] unit increase	Affymetrix [10000000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs11153730-T	0.520014	8E-9	(370 ms)	0.0325839	[0.022-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs11153730-T	0.520014	8E-54	(-18 ms)	0.0843402	[0.073-0.095] unit decrease	Affymetrix [10000000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs11153730-T	0.520014	8E-43	(304 ms)	0.0748663	[0.064-0.086] unit decrease	Affymetrix [10000000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs11153730-T	0.520014	8E-22	(130 ms)	0.0537753	[0.043-0.065] unit increase	Affymetrix [10000000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs11153730-T	0.520014	8E-12	(74 ms)	0.0392321	[0.028-0.05] unit increase	Affymetrix [10000000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs11153730-T	0.520014	8E-10	(366 ms)	0.0346457	[0.024-0.046] unit decrease	Affymetrix [10000000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs11153730-T	0.520014	7E-49	(-14 ms)	0.0803219	[0.069-0.091] unit decrease	Affymetrix [10000000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs11153730-T	0.520014	7E-43	(298 ms)	0.0758958	[0.065-0.087] unit decrease	Affymetrix [10000000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs11153730-T	0.520014	7E-37	(332 ms)	0.0696095	[0.059-0.081] unit decrease	Affymetrix [10000000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs11153730-T	0.520014	7E-37	(290 ms)	0.0700281	[0.059-0.081] unit decrease	Affymetrix [10000000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs11153730-T	0.520014	7E-22	(160 ms)	0.0527507	[0.042-0.064] unit increase	Affymetrix [10000000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs11153730-T	0.520014	7E-16	(354 ms)	0.0454227	[0.034-0.056] unit decrease	Affymetrix [10000000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs11153730-T	0.520014	7E-15	(110 ms)	0.0442041	[0.033-0.055] unit increase	Affymetrix [10000000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs11153730-T	0.520014	6E-46	(314 ms)	0.0779485	[0.067-0.089] unit decrease	Affymetrix [10000000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs11153730-T	0.520014	6E-42	(322 ms)	0.074499	[0.064-0.085] unit decrease	Affymetrix [10000000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs11153730-T	0.520014	6E-24	(142 ms)	0.0564556	[0.046-0.067] unit increase	Affymetrix [10000000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs11153730-T	0.520014	6E-22	(186 ms)	0.0524026	[0.042-0.063] unit increase	Affymetrix [10000000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs11153730-T	0.520014	6E-22	(174 ms)	0.0518	[0.041-0.063] unit increase	Affymetrix [10000000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs11153730-T	0.520014	6E-22	(124 ms)	0.055141	[0.044-0.066] unit increase	Affymetrix [10000000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs11153730-T	0.520014	6E-21	(18 ms)	0.0519361	[0.041-0.063] unit decrease	Affymetrix [10000000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs11153730-T	0.520014	6E-18	(82 ms)	0.0497296	[0.039-0.061] unit increase	Affymetrix [10000000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs11153730-T	0.520014	6E-15	(68 ms)	0.0448373	[0.034-0.056] unit increase	Affymetrix [10000000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs11153730-T	0.520014	5E-42	(302 ms)	0.0740037	[0.063-0.085] unit decrease	Affymetrix [10000000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs11153730-T	0.520014	5E-39	(294 ms)	0.0718174	[0.061-0.083] unit decrease	Affymetrix [10000000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs11153730-T	0.520014	5E-29	(146 ms)	0.0607547	[0.05-0.072] unit increase	Affymetrix [10000000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs11153730-T	0.520014	5E-28	(344 ms)	0.0606351	[0.05-0.072] unit decrease	Affymetrix [10000000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs11153730-T	0.520014	5E-24	(152 ms)	0.0560186	[0.045-0.067] unit increase	Affymetrix [10000000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs11153730-T	0.520014	5E-24	(150 ms)	0.0558746	[0.045-0.067] unit increase	Affymetrix [10000000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs11153730-T	0.520014	5E-18	(84 ms)	0.0490508	[0.038-0.06] unit increase	Affymetrix [10000000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs11153730-T	0.520014	4E-54	(-16 ms)	0.0849022	[0.074-0.096] unit decrease	Affymetrix [10000000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs11153730-T	0.520014	4E-46	(310 ms)	0.0782651	[0.067-0.089] unit decrease	Affymetrix [10000000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs11153730-T	0.520014	4E-38	(292 ms)	0.0711912	[0.06-0.082] unit decrease	Affymetrix [10000000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs11153730-T	0.520014	4E-37	(334 ms)	0.0697381	[0.059-0.081] unit decrease	Affymetrix [10000000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs11153730-T	0.520014	4E-23	(188 ms)	0.0536132	[0.043-0.064] unit increase	Affymetrix [10000000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs11153730-T	0.520014	4E-23	(168 ms)	0.0545707	[0.044-0.065] unit increase	Affymetrix [10000000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs11153730-T	0.520014	4E-22	(178 ms)	0.0515649	[0.041-0.062] unit increase	Affymetrix [10000000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs11153730-T	0.520014	4E-22	(104 ms)	0.0546423	[0.044-0.065] unit increase	Affymetrix [10000000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs11153730-T	0.520014	4E-21	(118 ms)	0.0532787	[0.042-0.064] unit increase	Affymetrix [10000000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs11153730-T	0.520014	4E-20	(136 ms)	0.0514494	[0.041-0.062] unit increase	Affymetrix [10000000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs11153730-T	0.520014	4E-20	(102 ms)	0.0515101	[0.041-0.062] unit increase	Affymetrix [10000000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs11153730-T	0.520014	4E-16	(352 ms)	0.045908	[0.035-0.057] unit decrease	Affymetrix [10000000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs11153730-T	0.520014	4E-16	(114 ms)	0.0464188	[0.036-0.057] unit increase	Affymetrix [10000000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs11153730-T	0.520014	4E-14	(358 ms)	0.0427012	[0.032-0.054] unit decrease	Affymetrix [10000000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs11153730-T	0.520014	3E-44	(316 ms)	0.0764825	[0.065-0.087] unit decrease	Affymetrix [10000000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs11153730-T	0.520014	3E-43	(318 ms)	0.0751974	[0.064-0.086] unit decrease	Affymetrix [10000000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs11153730-T	0.520014	3E-41	(296 ms)	0.0739522	[0.063-0.085] unit decrease	Affymetrix [10000000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs11153730-T	0.520014	3E-37	(330 ms)	0.070162	[0.059-0.081] unit decrease	Affymetrix [10000000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs11153730-T	0.520014	3E-36	(10 ms)	0.0702768	[0.059-0.081] unit decrease	Affymetrix [10000000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs11153730-T	0.520014	3E-34	(336 ms)	0.0673422	[0.056-0.078] unit decrease	Affymetrix [10000000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs11153730-T	0.520014	3E-31	(340 ms)	0.0636522	[0.053-0.075] unit decrease	Affymetrix [10000000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs11153730-T	0.520014	3E-28	(164 ms)	0.0597565	[0.049-0.071] unit increase	Affymetrix [10000000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs11153730-T	0.520014	3E-27	(144 ms)	0.0592626	[0.048-0.07] unit increase	Affymetrix [10000000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs11153730-T	0.520014	3E-26	(166 ms)	0.0582127	[0.047-0.069] unit increase	Affymetrix [10000000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs11153730-T	0.520014	3E-26	(148 ms)	0.057622	[0.047-0.068] unit increase	Affymetrix [10000000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs11153730-T	0.520014	3E-24	(280 ms)	0.0571368	[0.046-0.068] unit decrease	Affymetrix [10000000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs11153730-T	0.520014	3E-24	(126 ms)	0.0570474	[0.046-0.068] unit increase	Affymetrix [10000000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs11153730-T	0.520014	3E-23	(170 ms)	0.0541918	[0.043-0.065] unit increase	Affymetrix [10000000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs11153730-T	0.520014	3E-22	(346 ms)	0.0546925	[0.044-0.066] unit decrease	Affymetrix [10000000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs11153730-T	0.520014	3E-22	(278 ms)	0.0546625	[0.044-0.066] unit decrease	Affymetrix [10000000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs11153730-T	0.520014	3E-22	(154 ms)	0.0536942	[0.043-0.064] unit increase	Affymetrix [10000000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs11153730-T	0.520014	3E-22	(132 ms)	0.0539304	[0.043-0.065] unit increase	Affymetrix [10000000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs11153730-T	0.520014	3E-21	(134 ms)	0.0528839	[0.042-0.064] unit increase	Affymetrix [10000000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs11153730-T	0.520014	3E-18	(274 ms)	0.0490834	[0.038-0.06] unit decrease	Affymetrix [10000000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs11153730-T	0.520014	3E-16	(356 ms)	0.0459526	[0.035-0.057] unit decrease	Affymetrix [10000000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs11153730-T	0.520014	3E-16	(272 ms)	0.0459777	[0.035-0.057] unit decrease	Affymetrix [10000000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs11153730-T	0.520014	3E-16	(100 ms)	0.0468461	[0.036-0.058] unit increase	Affymetrix [10000000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs11153730-T	0.520014	3E-15	(112 ms)	0.0445856	[0.034-0.055] unit increase	Affymetrix [10000000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs11153730-T	0.520014	3E-14	(66 ms)	0.0434082	[0.032-0.054] unit increase	Affymetrix [10000000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs11153730-T	0.520014	3E-13	(360 ms)	0.0410364	[0.03-0.052] unit decrease	Affymetrix [10000000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs11153730-T	0.520014	3E-11	(72 ms)	0.0386619	[0.028-0.05] unit increase	Affymetrix [10000000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs11153730-T	0.520014	2E-8	(372 ms)	0.0315134	[0.02-0.043] unit decrease	Affymetrix [10000000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs11153730-T	0.520014	2E-46	(312 ms)	0.0784344	[0.067-0.089] unit decrease	Affymetrix [10000000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs11153730-T	0.520014	2E-46	(308 ms)	0.0781544	[0.067-0.089] unit decrease	Affymetrix [10000000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs11153730-T	0.520014	2E-43	(300 ms)	0.0755322	[0.065-0.087] unit decrease	Affymetrix [10000000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs11153730-T	0.520014	2E-40	(-12 ms)	0.0733228	[0.062-0.084] unit decrease	Affymetrix [10000000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs11153730-T	0.520014	2E-38	(324 ms)	0.0707929	[0.06-0.082] unit decrease	Affymetrix [10000000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs11153730-T	0.520014	2E-37	(326 ms)	0.0697642	[0.059-0.081] unit decrease	Affymetrix [10000000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs11153730-T	0.520014	2E-34	(14 ms)	0.0679511	[0.057-0.079] unit decrease	Affymetrix [10000000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs11153730-T	0.520014	2E-31	(338 ms)	0.0641172	[0.053-0.075] unit decrease	Affymetrix [10000000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs11153730-T	0.520014	2E-30	(-10 ms)	0.0635398	[0.053-0.074] unit decrease	Affymetrix [10000000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs11153730-T	0.520014	2E-29	(286 ms)	0.0635033	[0.052-0.075] unit decrease	Affymetrix [10000000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs11153730-T	0.520014	2E-27	(16 ms)	0.0602715	[0.049-0.071] unit decrease	Affymetrix [10000000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs11153730-T	0.520014	2E-23	(128 ms)	0.0559957	[0.045-0.067] unit increase	Affymetrix [10000000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs11153730-T	0.520014	2E-21	(122 ms)	0.0534191	[0.043-0.064] unit increase	Affymetrix [10000000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs11153730-T	0.520014	2E-21	(120 ms)	0.0536013	[0.043-0.064] unit increase	Affymetrix [10000000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs11153730-T	0.520014	2E-20	(348 ms)	0.0521824	[0.041-0.063] unit decrease	Affymetrix [10000000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs11153730-T	0.520014	2E-18	(350 ms)	0.0494614	[0.038-0.061] unit decrease	Affymetrix [10000000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs11153730-T	0.520014	2E-18	(116 ms)	0.0495259	[0.039-0.06] unit increase	Affymetrix [10000000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs11153730-T	0.520014	2E-17	(86 ms)	0.0487132	[0.038-0.06] unit increase	Affymetrix [10000000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs11153730-T	0.520014	2E-16	(88 ms)	0.0481723	[0.037-0.059] unit increase	Affymetrix [10000000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs11153730-T	0.520014	2E-14	(76 ms)	0.0436669	[0.033-0.055] unit increase	Affymetrix [10000000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs11153730-T	0.520014	2E-12	(362 ms)	0.0395349	[0.028-0.051] unit decrease	Affymetrix [10000000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs11153730-T	0.520014	2E-11	(364 ms)	0.0380775	[0.027-0.049] unit decrease	Affymetrix [10000000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs11153730-T	0.520014	1E-8	(368 ms)	0.0322342	[0.021-0.043] unit decrease	Affymetrix [10000000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs11153730-T	0.520014	1E-44	(306 ms)	0.0766287	[0.066-0.088] unit decrease	Affymetrix [10000000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs11153730-T	0.520014	1E-38	(12 ms)	0.0720038	[0.061-0.083] unit decrease	Affymetrix [10000000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs11153730-T	0.520014	1E-33	(288 ms)	0.0666878	[0.056-0.078] unit decrease	Affymetrix [10000000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs11153730-T	0.520014	1E-31	(342 ms)	0.0643193	[0.053-0.075] unit decrease	Affymetrix [10000000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs11153730-T	0.520014	1E-28	(284 ms)	0.0624163	[0.051-0.073] unit decrease	Affymetrix [10000000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs11153730-T	0.520014	1E-26	(282 ms)	0.0601083	[0.049-0.071] unit decrease	Affymetrix [10000000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs11153730-T	0.520014	1E-25	(162 ms)	0.0571633	[0.046-0.068] unit increase	Affymetrix [10000000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs11153730-T	0.520014	1E-23	(172 ms)	0.0546646	[0.044-0.065] unit increase	Affymetrix [10000000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs11153730-T	0.520014	1E-22	(138 ms)	0.0550142	[0.044-0.066] unit increase	Affymetrix [10000000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs11153730-T	0.520014	1E-21	(180 ms)	0.0520104	[0.041-0.063] unit increase	Affymetrix [10000000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs11153730-T	0.520014	1E-20	(276 ms)	0.0522979	[0.041-0.063] unit decrease	Affymetrix [10000000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs11153730-T	0.520014	1E-20	(176 ms)	0.0500719	[0.039-0.061] unit increase	Affymetrix [10000000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs11153730-T	0.520014	1E-20	(156 ms)	0.0506352	[0.04-0.061] unit increase	Affymetrix [10000000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	SLC35F1	rs11153730-T	0.520014	1E-15	(108 ms)	0.0457492	[0.035-0.057] unit increase	Affymetrix [10000000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	6q22.31	SLC35F1	rs11153730-T	0.5097	3E-54		0.9956	[0.87-1.12] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	QT interval	3,293 African American individuals, 13,698 Hispanic/Latino individuals, 127 Asian ancestry individuals, 230 Native American ancestry individuals	NA	6q22.31	NR	rs11153730-?	NR	1E-13		1.671488	[1.23-2.11] unit increase	Illumina [26659972] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	30679814	van Setten J	2019-01-24	Eur J Hum Genet	Genome-wide association meta-analysis of 30,000 samples identifies seven novel loci for quantitative ECG traits.	QT interval	2,332 Erasmus Rucphen Family (founder/genetic isolate) individuals, 24,462 European ancestry individuals	391 Carlantino (founder/genetic isolate) individuals, 981 Friuli Venezia Giulia (founder/genetic isolate) individuals, 31,225 European ancestry individuals, 2,048 African American individuals	6q22.31	SLC35F1	rs11153730-C	0.499	2E-35		2.249	[1.89-2.6] unit increase	Affymetrix, Illumina [at least 19000000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	30012220	Prins BP	2018-07-17	Genome Biol	Exome-chip meta-analysis identifies novel loci associated with cardiac conduction, including ADAMTS6.	QRS duration	up to 77,898 European ancestry individuals, up to 7,695 African American individuals	up to 111,874 European ancestry individuals	6q22.31	intergenic	rs11153730-C	0.505432	1E-70		0.57767	[0.51-0.64] ms increase	Illumina [162199]	N
1490	chr6	118667521	118667522	rs11153730	30012220	Prins BP	2018-07-17	Genome Biol	Exome-chip meta-analysis identifies novel loci associated with cardiac conduction, including ADAMTS6.	QRS duration	77,898 European ancestry individuals	NA	6q22.31	intergenic	rs11153730-C	0.494650069589351	9E-38		0.57934535	[0.49-0.67] ms increase	Illumina [213295]	N
1490	chr6	118667521	118667522	rs11153730	27659466	van der Harst P	2016-09-27	J Am Coll Cardiol	52 Genetic Loci Influencing Myocardial Mass.	QRS duration	59,565 European ancestry individuals, 690 Orcadian (founder/genetic isolate) individuals	13,263 European ancestry individuals, 3,603 African American individuals, 4,619 Indian ancestry individuals	6q22.31	PLN, SLC35F1, CEP85L	rs11153730-?	NR	8E-29	(EA)			Affymetrix, Illumina, Perlegen [at least 2766983] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	27659466	van der Harst P	2016-09-27	J Am Coll Cardiol	52 Genetic Loci Influencing Myocardial Mass.	QRS duration	59,565 European ancestry individuals, 690 Orcadian (founder/genetic isolate) individuals	13,263 European ancestry individuals, 3,603 African American individuals, 4,619 Indian ancestry individuals	6q22.31	NR	rs11153730-?	NR	7E-29	(EA)	0.63	[0.51-0.75] unit decrease	Affymetrix, Illumina, Perlegen [at least 2766983] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	27659466	van der Harst P	2016-09-27	J Am Coll Cardiol	52 Genetic Loci Influencing Myocardial Mass.	QRS complex (Sokolow-Lyon)	up to 54,303 European ancestry individuals, up to 690 Orcadian (founder/genetic isolate) individuals	13,263 European ancestry individuals, 3,603 African American individuals, 4,619 Indian ancestry individuals	6q22.31	PLN	rs11153730-?	NR	1E-9	(EA)			Affymetrix, Illumina, Perlegen [2766983] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	27577874	Evans DS	2016-08-29	Hum Mol Genet	Fine-mapping, novel loci identification, and SNP association transferability in a genome-wide association study of QRS duration in African Americans.	QRS duration	up to 13,031 African American individuals, 40,407 European ancestry individuals	NA	6q22.31	PLN	rs11153730-T	0.51	1E-18	(European)	0.59	[NR] millisecond decrease	Affymetrix, Illumina [2955816] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	27577874	Evans DS	2016-08-29	Hum Mol Genet	Fine-mapping, novel loci identification, and SNP association transferability in a genome-wide association study of QRS duration in African Americans.	QRS duration	up to 13,031 African American individuals, 40,407 European ancestry individuals	NA	6q22.31	PLN	rs11153730-T		5E-19		0.54	[0.42-0.66] millisecond decrease	Affymetrix, Illumina [2955816] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	24952745	Arking DE	2014-06-22	Nat Genet	Genetic association study of QT interval highlights role for calcium signaling pathways in myocardial repolarization.	QT interval	Up to 70,389 European ancestry individuals, up to 672 Orcadian individuals	Up to 33,316 European ancestry individuals	6q22.31	SLC35F1, PLN	rs11153730-T	0.502	2E-67		1.65	[1.45-1.85] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	23583979	den Hoed M	2013-04-14	Nat Genet	Identification of heart rate-associated loci and their effects on cardiac conduction and rhythm disorders.	Heart rate	85,787 European ancestry individuals, 6,568 Indian Asian ancestry indiviudals	88,823 European ancestry individuals	6q22.31	SLC35F1	rs11153730-T	0.509	8E-21		0.381	[0.29-0.47] unit increase	Affymetrix, Illumina [2516789] (imputed)	N
1490	chr6	118667521	118667522	rs11153730	19587794	Nolte IM	2009-07-09	PLoS One	Common genetic variation near the phospholamban gene is associated with cardiac repolarisation: meta-analysis of three genome-wide association studies.	QT interval	3,558 European ancestry individuals	29,527 European ancestry individuals	6q22.31	C6orf204, SLC35F1, PLN	rs11153730-C	0.50	2E-29		0.09	[NR] unit increase	Affymetrix, Illumina [~ 2399142] (imputed)	N
1490	chr6	118678316	118678317	rs1761617	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	6q22.31		rs1761617-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1490	chr6	118679973	118679974	rs1743241	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Left ventricular global longitudinal strain	19,260 European ancestry individuals	NA	6q22.31	SLC35F1	rs1743241-G	0.4336	4E-9		0.1645	[0.11-0.22] unit increase	Affymetrix [~ 9500000] (imputed)	N
1490	chr6	118680373	118680374	rs11970286	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	QT interval	3,293 African American individuals, 13,698 Hispanic/Latino individuals, 127 Asian ancestry individuals, 230 Native American ancestry individuals	NA	6q22.31	NR	rs11970286-?	NR	7E-12		1.625725	[1.16-2.09] unit increase	Illumina [26659972] (imputed)	N
1490	chr6	118680373	118680374	rs11970286	20062063	Holm H	2010-01-10	Nat Genet	Several common variants modulate heart rate, PR interval and QRS duration.	Electrocardiographic traits	Up to 12,670 European ancestry individuals	Up to 10,352 European ancestry individuals	6q22.31	C6orf204	rs11970286-T	0.54	8E-7	(QT interval)	6.19	[3.73-8.65] % s.d. increase	Illumina [306060]	N
1490	chr6	118680373	118680374	rs11970286	19305409	Pfeufer A	2009-03-22	Nat Genet	Common variants at ten loci modulate the QT interval duration in the QTSCD Study.	QT interval	15,842 European ancestry individuals	up to 13,602 individuals	6q22.31	PLN	rs11970286-T	0.44	2E-24		1.64	[1.25-2.03] ms increase	Affymetrix, Illumina [2557000] (imputed)	N
1490	chr6	118690013	118690014	rs9320648	32814899	Meyer HV	2020-08-19	Nature	Genetic and functional insights into the fractal structure of the heart.	Myocardial fractal dimension (slice 8)	18,096 European individuals		6q22.31	NR	rs9320648-C	0.57728	4E-10		0.066677	[0.046-0.088] unit decrease	Affymetrix [14134301] (imputed)	N
1490	chr6	118690013	118690014	rs9320648	32814899	Meyer HV	2020-08-19	Nature	Genetic and functional insights into the fractal structure of the heart.	Myocardial fractal dimension (slice 7)	18,096 European individuals		6q22.31	NR	rs9320648-C	0.57728	6E-18		0.091753	[0.071-0.113] unit decrease	Affymetrix [14134301] (imputed)	N
1490	chr6	118690013	118690014	rs9320648	32814899	Meyer HV	2020-08-19	Nature	Genetic and functional insights into the fractal structure of the heart.	Myocardial fractal dimension (slice 6)	18,096 European individuals		6q22.31	NR	rs9320648-C	0.57728	4E-20		0.097608	[0.077-0.118] unit decrease	Affymetrix [14134301] (imputed)	N
1490	chr6	118690013	118690014	rs9320648	32814899	Meyer HV	2020-08-19	Nature	Genetic and functional insights into the fractal structure of the heart.	Myocardial fractal dimension (slice 5)	18,096 European individuals		6q22.31	NR	rs9320648-C	0.57728	2E-11		0.071482	[0.051-0.092] unit decrease	Affymetrix [14134301] (imputed)	N
1490	chr6	118691444	118691445	rs77710920	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atrial fibrillation/atrial flutter	29,212 European ancestry cases, 400,539 European ancestry controls, 4,150 East Asian ancestry cases, 155,540 East Asian ancestry controls	NA	6q22.31		rs77710920-C	NR	3E-8		0.1325	[0.086-0.179] unit increase	Affymetrix, Illumina [25830072] (imputed)	N
1490	chr6	118692151	118692152	rs10457327	27798624	Eppinga RN	2016-10-31	Nat Genet	Identification of genomic loci associated with resting heart rate and shared genetic predictors with all-cause mortality.	Resting heart rate	127,919 European ancestry individuals, 2,478 Asian ancestry individuals, 1,734 Black individuals, 684 Mixed ancestry individuals, 1,436 individuals	130,795 European ancestry individuals	6q22.31	NR	rs10457327-C	0.05	1E-13		0.7	[0.52-0.88] unit increase	Affymetrix [19941912] (imputed)	N
1490	chr6	118698979	118698980	rs75363923	28439531	Aslibekyan S	2017-03-08	J Nutr Intermed Metab	Genome- and CD4+ T-cell methylome-wide association study of circulating trimethylamine-N-oxide in the Genetics of Lipid Lowering Drugs and Diet Network (GOLDN).	Plasma trimethylamine N-oxide levels	626 European ancestry individuals	NA	6q22.31	intergenic	rs75363923-?	NR	4E-7		1.56	[0.97-2.15] unit decrease	Affymetrix [9432837] (imputed)	N
1490	chr6	118706642	118706643	rs2078383	29213071	Mendez-Giraldez R	2017-12-06	Sci Rep	GWAS of the electrocardiographic QT interval in Hispanics/Latinos generalizes previously identified loci and identifies population-specific signals.	QT interval	15,997 Hispanic/Latino individuals	NA	6q22.31	SLC35F1	rs2078383-T	0.25	2E-13		1.83	[1.34-2.32] ms increase	Affymetrix, Illumina [up to 17586686] (imputed)	N
1490	chr6	118710562	118710563	rs72967597	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Reading ability (multivariate)	up to 3,468 European ancestry individuals	NA	6q22.31	NR	rs72967597-?		6E-6				Illumina [up to 6969139] (imputed)	N
1490	chr6	118710562	118710563	rs72967597	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Rapid automised naming of digits	2,563 European ancestry individuals	NA	6q22.31	Intergenic	rs72967597-C	0.9379092	9E-7		0.391144	[0.24-0.55] unit increase	Illumina [6952813] (imputed)	N
1490	chr6	118717333	118717333	rs143755406	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	6q22.31		rs143755406-CCT	NR	4E-8		0.0134	[0.0087-0.0181] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1490	chr6	118741381	118741382	rs17227124	32602732	Baldassari AR	2020-06-30	Circ Genom Precis Med	Multi-ethnic Genome-wide Association Study of Decomposed Cardioelectric Phenotypes Illustrates Strategies to Identify and Characterize Evidence of Shared Genetic Effects for Complex Traits.	Electrocardiographic traits (multivariate)	17,873 European ancestry individuals, 12,749 Hispanic individuals, 5,408 African American individuals, 315 Chinese-American individuals	NA	6q22.31	SLC35F1	rs17227124-?	NR	1E-11				Affymetrix, Illumina [22000000] (imputed)	N
1491	chr6	118780145	118780146	rs12214483	32814899	Meyer HV	2020-08-19	Nature	Genetic and functional insights into the fractal structure of the heart.	Myocardial fractal dimension (slice 8)	18,096 European individuals		6q22.31	NR	rs12214483-C	0.54588	2E-8		0.058937	[0.038-0.08] unit decrease	Affymetrix [14134301] (imputed)	N
1491	chr6	118780145	118780146	rs12214483	32814899	Meyer HV	2020-08-19	Nature	Genetic and functional insights into the fractal structure of the heart.	Myocardial fractal dimension (slice 7)	18,096 European individuals		6q22.31	NR	rs12214483-C	0.54588	3E-15		0.083034	[0.062-0.104] unit decrease	Affymetrix [14134301] (imputed)	N
1491	chr6	118780145	118780146	rs12214483	32814899	Meyer HV	2020-08-19	Nature	Genetic and functional insights into the fractal structure of the heart.	Myocardial fractal dimension (slice 6)	18,096 European individuals		6q22.31	NR	rs12214483-C	0.54588	2E-16		0.086877	[0.066-0.108] unit decrease	Affymetrix [14134301] (imputed)	N
1491	chr6	118780145	118780146	rs12214483	32814899	Meyer HV	2020-08-19	Nature	Genetic and functional insights into the fractal structure of the heart.	Myocardial fractal dimension (slice 5)	18,096 European individuals		6q22.31	NR	rs12214483-C	0.54588	2E-8		0.059379	[0.039-0.08] unit decrease	Affymetrix [14134301] (imputed)	N
1491	chr6	118788651	118788652	rs11752626	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	QT interval	3,293 African American individuals, 13,698 Hispanic/Latino individuals, 127 Asian ancestry individuals, 230 Native American ancestry individuals	NA	6q22.31	NR	rs11752626-?	NR	9E-14		1.775739	[1.31-2.24] unit increase	Illumina [26659972] (imputed)	N
1491	chr6	118788651	118788652	rs11752626	23166209	Smith JG	2012-11-19	Circ Cardiovasc Genet	Impact of ancestry and common genetic variants on QT interval in African Americans.	QT interval	13,105 African American individuals	NA	6q22.31	PLN	rs11752626-G	0.74	2E-6		1.56	[0.93-2.19] unit decrease	Affymetrix, Illumina [2800000] (imputed)	N
1491	chr6	118794689	118794690	rs12661338	27890468	van Hulzen KJE	2016-10-18	Biol Psychiatry	Genetic Overlap Between Attention-Deficit/Hyperactivity Disorder and Bipolar Disorder: Evidence From Genome-wide Association Study Meta-analysis.	Bipolar disorder or attention deficit hyperactivity disorder	9,650 European ancestry bipolar disorder cases, 2,950 European ancestry ADHD cases, 1,659 European and unknown ancestry ADHD cases, 16,325 European ancestry controls, 2,942 European and unknown ancestry controls, 2,096 controls	NA	6q22.31	CEP85L	rs12661338-?	NR	5E-7				Affymetrix, Illumina [NR] (imputed)	N
1491	chr6	118807846	118807847	rs25422	22010048	Wu X	2011-10-18	Hum Mol Genet	A genome-wide association study identifies a novel susceptibility locus for renal cell carcinoma on 12p11.23.	Renal cell carcinoma	894 European ancestry cases, 1,516 European ancestry controls	3,772 European ancestry cases, 8,505 European ancestry controls	6q22.31	NR	rs25422-?	NR	5E-6				Illumina [533191]	N
1492	chr6	118957379	118957380	rs11755532	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Rapid automised naming of digits	2,563 European ancestry individuals	NA	6q22.31	CEP85L	rs11755532-G	0.9353364	2E-6		0.372455	[0.22-0.53] unit increase	Illumina [6952813] (imputed)	N
1492	chr6	118962739	118962740	rs6906287	23463857	Ritchie MD	2013-03-05	Circulation	Genome- and phenome-wide analyses of cardiac conduction identifies markers of arrhythmia risk.	Electrocardiographic conduction measures	5,272 European ancestry indiviudals	40,407 European ancestry individuals	6q22.31	C6orf204	rs6906287-C	0.451	6E-16	(QRS duration - CHARGE)	0.5383	[NR] msec increase	Illumina [528508]	N
1492	chr6	118974797	118974798	rs9481842	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	6q22.31	CEP85L	rs9481842-G	0.27	2E-16	(EA)	1.07	[1.05-1.09]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1492	chr6	118993631	118993632	rs11756438	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	QT interval	3,293 African American individuals, 13,698 Hispanic/Latino individuals, 127 Asian ancestry individuals, 230 Native American ancestry individuals	NA	6q22.31	NR	rs11756438-?	NR	9E-11		1.443026	[1.01-1.88] unit increase	Illumina [26659972] (imputed)	N
1492	chr6	118993631	118993632	rs11756438	27890468	van Hulzen KJE	2016-10-18	Biol Psychiatry	Genetic Overlap Between Attention-Deficit/Hyperactivity Disorder and Bipolar Disorder: Evidence From Genome-wide Association Study Meta-analysis.	Bipolar disorder or attention deficit hyperactivity disorder	9,650 European ancestry bipolar disorder cases, 2,950 European ancestry ADHD cases, 1,659 European and unknown ancestry ADHD cases, 16,325 European ancestry controls, 2,942 European and unknown ancestry controls, 2,096 controls	NA	6q22.31	CEP85L	rs11756438-A	0.34	4E-8		1.1	[NR]	Affymetrix, Illumina [NR] (imputed)	N
1492	chr6	118993631	118993632	rs11756438	19305408	Newton-Cheh C	2009-03-22	Nat Genet	Common variants at ten loci influence QT interval duration in the QTGEN Study.	QT interval	13,685 European ancestry individuals	15,854 European ancestry individuals	6q22.31	c6orf204, SLC35F1, PLN, ASF1A	rs11756438-A	0.47	5E-22		1.4	[1.06-1.74] msec increase	Affymetrix, Illumina [up to 2543686] (imputed)	N
1492	chr6	119000231	119000232	rs3902035	32602732	Baldassari AR	2020-06-30	Circ Genom Precis Med	Multi-ethnic Genome-wide Association Study of Decomposed Cardioelectric Phenotypes Illustrates Strategies to Identify and Characterize Evidence of Shared Genetic Effects for Complex Traits.	Electrocardiographic traits (multivariate)	17,873 European ancestry individuals, 12,749 Hispanic individuals, 5,408 African American individuals, 315 Chinese-American individuals	NA	6q22.31	CEP85L	rs3902035-?	NR	1E-6				Affymetrix, Illumina [22000000] (imputed)	N
1492	chr6	119000231	119000232	rs3902035	24952745	Arking DE	2014-06-22	Nat Genet	Genetic association study of QT interval highlights role for calcium signaling pathways in myocardial repolarization.	QT interval	Up to 70,389 European ancestry individuals, up to 672 Orcadian individuals	Up to 33,316 European ancestry individuals	6q22.31	SLC35F1, PLN	rs3902035-C	0.316	8E-16		0.85	[0.63-1.07] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1492	chr6	119009912	119009913	rs6911599	30679814	van Setten J	2019-01-24	Eur J Hum Genet	Genome-wide association meta-analysis of 30,000 samples identifies seven novel loci for quantitative ECG traits.	RR interval (heart rate)	2,006 Erasmus Rucphen Family (founder/genetic isolate) individuals, 26,692 European ancestry individuals	NA	6q22.31	CEP85L	rs6911599-G	0.495	3E-10		6.727	[4.63-8.82] unit decrease	Affymetrix, Illumina [at least 19000000] (imputed)	N
1493	chr6	119043897	119043898	rs9489510	24952745	Arking DE	2014-06-22	Nat Genet	Genetic association study of QT interval highlights role for calcium signaling pathways in myocardial repolarization.	QT interval	Up to 70,389 European ancestry individuals, up to 672 Orcadian individuals	Up to 33,316 European ancestry individuals	6q22.31	SLC35F1, PLN	rs9489510-G	0.31	1E-8		0.61	[0.39-0.83] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1493	chr6	119078651	119078652	rs78930606	28167095	Forno E	2017-02-04	J Allergy Clin Immunol	Genome-wide interaction study of dust mite allergen on lung function in children with asthma.	Lung function (FEV1/FVC) in asthma (dust mite allergen exposure interaction)	440 Puerto Rican ancestry child cases	497 European ancestry child cases, 605 Hispanic child cases	6q22.31	NR	rs78930606-C	0.018	1E-6				Illumina [1830000] (imputed)	N
1493	chr6	119079799	119079800	rs67456868	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6q22.31		rs67456868-A	0.1839	5E-11		0.0119	[0.0084-0.0154] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1493	chr6	119080378	119080379	rs9489520	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6q22.31	Intergenic	rs9489520-A	0.275	6E-9	(MTAG)	0.0085	[0.0056-0.0114] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1493	chr6	119102270	119102271	rs7743045	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	6q22.31	RP11-210H10__A.1	rs7743045-G	0.6955	7E-9		0.02275889	[0.015-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1493	chr6	119112590	119112591	rs7754916	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6q22.31		rs7754916-T	0.3187	2E-12	(conditional-joint)	0.0106	[0.0077-0.0135] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1493	chr6	119113316	119113317	rs9401090	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	6q22.31	MCM9	rs9401090-T	0.7501	9E-9		0.1637	[0.11-0.22] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1493	chr6	119132779	119132780	rs4946366	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	6q22.31		rs4946366-T	NR	1E-8		0.0133	[0.0088-0.0178] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
1493	chr6	119134464	119134465	rs117381875	33381925	Buchanan VL	2020-12-30	Pediatr Obes	Genome-wide association study identifying novel variant for fasting insulin and allelic heterogeneity in known glycemic loci in Chilean adolescents: The Santiago Longitudinal Study.	Homeostasis model assessment of insulin resistance	543 Chilean individuals	NA	6q22.31	MCM9	rs117381875-C	0.02	1E-6		0.689	[0.41-0.97] unit increase	Illumina [NR] (imputed)	N
1493	chr6	119137010	119137011	rs35917528	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Testosterone levels	310,461 European ancestry individuals, 5,453 African ancestry individuals, 6,680 South Asian ancestry individuals	NA	6q22.31	NR	rs35917528-A	NR	4E-9		0.0231	[0.015-0.031] unit decrease	Affymetrix [9000000] (imputed)	N
1493	chr6	119137010	119137011	rs35917528	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	6q22.31		rs35917528-?	NR	6E-9				NR [~ 8900000] (imputed)	N
1494	chr6	119167948	119167949	rs36182456	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	6q22.31	NR	rs36182456-A	0.7793829999999999	2E-33		0.0184446	[0.015-0.021] unit increase	Affymetrix [16578495] (imputed)	N
1494	chr6	119171411	119171422	rs386705174	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	6q22.31	NR	rs386705174-GT	0.7788660000000001	2E-39		0.0394934	[0.034-0.045] unit increase	Affymetrix [16585745] (imputed)	N
1494	chr6	119171865	119171866	rs1032388	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	6q22.31	NR	rs1032388-C	0.779374	3E-61		0.0543709	[0.048-0.061] unit increase	Affymetrix [16580851] (imputed)	N
1494	chr6	119178034	119178035	rs150141688	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	6q22.31		rs150141688-A	NR	4E-10		0.0134	[0.0093-0.0175] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
1494	chr6	119178034	119178035	rs150141688	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	6q22.31		rs150141688-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1494	chr6	119185696	119185697	rs36138353	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6q22.31	Intergenic	rs36138353-T	0.8253	2E-14	(MTAG)	0.0131	[0.0098-0.0164] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1494	chr6	119204625	119204625	rs36139342	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	DHEAS levels	4,301 European ancestry men, 3,358 European ancestry women	NA	6q22.31	NR	rs36139342-AC	0.192	8E-12		0.087	[0.062-0.112] unit decrease	Affymetrix [up to 8900000] (imputed)	N
1494	chr6	119204625	119204625	rs36139342	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	DHEAS levels	4,301 European ancestry men, 3,358 European ancestry women	NA	6q22.31	NR	rs36139342-AC	0.192	4E-8	(men)	0.0882746	[0.057-0.12] unit decrease	Affymetrix [up to 8900000] (imputed)	N
1494	chr6	119209507	119209508	rs141980369	30219690	Heinzman JT	2018-09-07	J Affect Disord	GWAS and systems biology analysis of depressive symptoms among smokers from the COPDGene cohort.	Depression in smokers	1,622 European ancestry cases, 391 African American cases, 4,954 European ancestry controls, 2,749 African American controls	NA	6q22.31	MCM9	rs141980369-G	0.8988	1E-6	(AA)			Illumina [NR] (imputed)	N
1494	chr6	119215401	119215402	rs11542663	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6q22.31		rs11542663-A	0.6947	2E-13		0.0112	[0.0083-0.0141] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1494	chr6	119215901	119215902	rs147886588	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	6q22.31	ASF1A, MCM9	rs147886588-G	0.165461	2E-17		0.025873039	[0.02-0.032] unit increase	Affymetrix [93095623] (imputed)	N
1494	chr6	119215901	119215902	rs147886588	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q22.31	NR	rs147886588-C	0.831928	1E-21				Affymetrix, Illumina [17210439] (imputed)	N
1494	chr6	119215901	119215902	rs147886588	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	6q22.31	NR	rs147886588-C	0.833055	4E-24		0.026321	[0.021-0.031] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
1494	chr6	119223017	119223018	rs62424036	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6q22.31	NR	rs62424036-C	0.01568	9E-9	(LTF)	0.3023	NR unit increase	Illumina [1671387] (imputed)	N
1494	chr6	119233479	119233480	rs10456918	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	6q22.31	MCM9	rs10456918-C	0.1797	3E-10		0.016694512	[0.011-0.022] unit increase	Affymetrix [up to 18485882] (imputed)	N
1494	chr6	119241751	119241752	rs9374757	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	6q22.31	Intergenic	rs9374757-T	0.224	1E-8	(MTAG)	0.0122	[0.0081-0.0163] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1494	chr6	119247733	119247734	rs6916491	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	6q22.31	NR	rs6916491-T	0.371769	7E-11		0.04744456	[0.033-0.062] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1494	chr6	119247733	119247734	rs6916491	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	6q22.31	NR	rs6916491-T	0.706755	2E-8		0.00500062	[0.0032-0.0068] unit increase	Affymetrix [16582909] (imputed)	N
1494	chr6	119247733	119247734	rs6916491	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	6q22.31	NR	rs6916491-T	0.706755	1E-8		0.00572374	[0.0037-0.0077] unit increase	Affymetrix [16582965] (imputed)	N
1494	chr6	119255490	119255491	rs9401101	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	6q22.31	Intergenic	rs9401101-T	0.1717	3E-13	(MTAG)	0.0159	[0.012-0.02] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1494	chr6	119256465	119256466	rs143248626	31598132	Donati G	2019-06-30	Mind Brain Educ	Genome-Wide Association Study of Latent Cognitive Measures in Adolescence: Genetic Overlap With Intelligence and Education.	Working memory	4,611 European ancestry adolescents	NA	6q22.31	MCM9	rs143248626-?	NR	9E-6		0.275	[0.16-0.39] unit decrease	Illumina [6319684] (imputed)	N
1495	chr6	119284883	119284884	rs794614	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	6q22.31	NR	rs794614-A	0.779659	4E-22		0.0229194	[0.018-0.028] unit increase	Affymetrix [16583148] (imputed)	N
1495	chr6	119329407	119329408	rs6927840	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6q22.31	MCM9	rs6927840-?	NR	9E-6	(CE 20:3)	0.8905564	[0.5-1.28] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1495	chr6	119336465	119336466	rs77578042	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	6q22.31	ENSG00000253194	rs77578042-?	NR	1E-10		0.0134931365	[0.0094-0.0176] unit decrease	NR [7306098]	N
1495	chr6	119337214	119337215	rs9387626	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	6q22.31		rs9387626-?	NR	8E-11				NR [~ 8900000] (imputed)	N
1495	chr6	119339063	119339064	rs12212870	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	FAM184A	rs12212870-C	0.926539	9E-9	(310 ms)	0.0603567	[0.039-0.082] unit decrease	Affymetrix [10000000] (imputed)	N
1495	chr6	119339063	119339064	rs12212870	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	FAM184A	rs12212870-C	0.926539	4E-8	(320 ms)	0.0580101	[0.037-0.079] unit decrease	Affymetrix [10000000] (imputed)	N
1495	chr6	119339063	119339064	rs12212870	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	FAM184A	rs12212870-C	0.926539	2E-8	(312 ms)	0.0592848	[0.038-0.081] unit decrease	Affymetrix [10000000] (imputed)	N
1495	chr6	119344545	119344546	rs12664251	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	6q22.31	FAM184A	rs12664251-A	NR	2E-7		1.052	[1.03-1.07]	Illumina [6627481] (imputed)	N
1495	chr6	119344545	119344546	rs12664251	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	6q22.31	intergenic	rs12664251-A	NR	7E-7		1.049	[1.03-1.07]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1495	chr6	119391180	119391181	rs583635	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	6q22.31	NR	rs583635-?	NR	7E-9				Affymetrix [NR]	N
1495	chr6	119396198	119396199	rs7745460	34337005	Duan H	2021-07-17	Biomed Res Int	A Genome-Wide Association Study of Age-Related Hearing Impairment in Middle- and Old-Aged Chinese Twins.	Hearing function (8 kHz)	131 Chinese ancestry dizygotic twin pairs	NA	6q22.31		rs7745460-?	NR	8E-6				Illumina [1365315]	N
1496	chr6	119416471	119416472	rs6569038	28654678	Mandage R	2017-06-27	PLoS One	Genetic factors affecting EBV copy number in lymphoblastoid cell lines derived from the 1000 Genome Project samples.	Epstein-Barr virus copy number in lymphoblastoid cell lines	389 East Asian ancestry individuals, 189 South Asian ancestry individuals, 492 European ancestry individuals, 467 Sub-Saharan African ancestry individuals, 59 African American individuals, 157 Hispanic/Latino individuals	NA	6q22.31	FAM184A	rs6569038-?	NR	7E-6	(Hispanic/Latino)			NR [at least 880000]	N
1496	chr6	119433734	119433735	rs79987229	33111402	Tan MMX	2020-10-28	Mov Disord	Genome-Wide Association Studies of Cognitive and Motor Progression in Parkinson's Disease.	Parkinson's disease progression (composite)	2,755 individuals	NA	6q22.31	FAM184A	rs79987229-T	0.01	3E-6		0.85	[0.50-1.20] unit increase	Illumina [5918868] (imputed)	N
1496	chr6	119434332	119434333	rs634755	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6q22.31	MAN1A1	rs634755-?	NR	2E-6	(CE 20:3)	0.9208654	[0.54-1.3] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1496	chr6	119508341	119508342	rs62418805	33381925	Buchanan VL	2020-12-30	Pediatr Obes	Genome-wide association study identifying novel variant for fasting insulin and allelic heterogeneity in known glycemic loci in Chilean adolescents: The Santiago Longitudinal Study.	Fasting glucose	543 Chilean individuals	NA	6q22.31	MAN1A1	rs62418805-C	0.32	4E-7		3.054	[1.87-4.23] unit increase	Illumina [NR] (imputed)	N
1496	chr6	119508870	119508871	rs9387640	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6q22.31	NR	rs9387640-?	NR	4E-9				Affymetrix [~ 8270000] (imputed)	N
1496	chr6	119518917	119518918	rs62418808	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LPO	5,364 Icelandic ancestry individuals	NA	6q22.31		rs62418808-A	0.3304	3E-12		0.140066	[0.1-0.18] unit decrease	Illumina [7506463] (imputed)	N
1496	chr6	119524515	119524516	rs9489620	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	6q22.31		rs9489620-C	NR	3E-9		0.0122	[0.0081-0.0163] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1496	chr6	119531579	119531580	rs72956777	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	6q22.31	MAN1A1	rs72956777-A	0.8663	2E-6		0.0474	[0.028-0.067] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1496	chr6	119531906	119531907	rs2267676	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6q22.31	C6orf60	rs2267676-?	NR	8E-6	(PC 32:0)	0.16502929	[0.093-0.237] unit increase	Affymetrix [at least 2500000] (imputed)	N
1497	chr6	119597329	119597330	rs143117004	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6q22.31	NR	rs143117004-C	0.01394	2E-8	(HMGCS1)	0.2207	NR unit increase	Illumina [1671387] (imputed)	N
1498	chr6	119771885	119771886	rs2649545	34441435	Corma-Gomez A	2021-08-20	Diagnostics (Basel)	A Genome-Wide Association Study on Liver Stiffness Changes during Hepatitis C Virus Infection Cure.	Liver stiffness changes at sustained virological response following antiviral therapy in HCV infection	242 European ancestry individuals	NA	6q22.31		rs2649545-A	0.447	3E-6		10.98	[6.508-15.45] unit decrease	Affymetrix [6939676] (imputed)	N
1499	chr6	119833117	119833118	rs7758258	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	6q22.31	intergenic	rs7758258-G	0.203271513345488	2E-6	(G_Holdemanella_HB)	0.2862	[0.17-0.4] unit increase	Illumina [7711310] (imputed)	N
1499	chr6	119866140	119866141	rs1392089	22610502	Kennedy RB	2012-05-19	Hum Genet	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IL-2)	Up to 512 European ancestry individuals, up to 199 African American individuals	NA	6q22.31	LOC728727	rs1392089-A		4E-7	(AA)			Illumina [NR]	N
1499	chr6	119879846	119879847	rs112122257	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6q22.31	NR	rs112122257-T	0.01568	2E-14	(MYLK)	0.03935	NR unit increase	Illumina [1671387] (imputed)	N
1499	chr6	119879846	119879847	rs112122257	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6q22.31	NR	rs112122257-T	0.01568	1E-8	(CNN3)	0.01366	NR unit increase	Illumina [1671387] (imputed)	N
1500	chr6	119938518	119938519	rs114172604	33009551	Zhang J	2020-10-03	Cereb Cortex	Genome-Wide Association Analysis of Neonatal White Matter Microstructure.	Neonatal white matter microstructure	471 European, Black, Asian, Native American or unknown ancestry individuals	NA	6q22.31	MAN1A1	rs114172604-A	NR	4E-6		2.64	[NR] unit increase	Affymetrix [NR] (imputed)	N
1500	chr6	119943400	119943401	rs2794256	25599974	Zhang H	2015-01-19	Genet Epidemiol	A genome-wide association study of early spontaneous preterm delivery.	Spontaneous preterm birth (preterm birth)	916 pre-term birth neonates, 935 term birth neonates	243 pre-term birth neonates, 149 term birth neonates	6q22.31	MAN1A1	rs2794256-A	0.27	5E-6		1.39	[NR]	Affymetrix [797196]	N
1500	chr6	120013778	120013779	rs143956168	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Stem cell growth factor beta levels	3,682 Finnish ancestry individuals	NA	6q22.31	NR	rs143956168-G		1E-6		0.5711	[0.34-0.8] SD units decrease	NR [10700000] (imputed)	N
1501	chr6	120111825	120111826	rs6936749	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6q22.31	NR	rs6936749-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1501	chr6	120113039	120113040	rs10782199	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	6q22.31	MIR3144	rs10782199-A	0.3863	3E-7		0.0336	[0.021-0.047] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1501	chr6	120142414	120142415	rs7752256	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	6q22.31	MIR3144	rs7752256-A	0.3859	5E-7		0.0353	[0.022-0.049] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1501	chr6	120168239	120168240	rs78001527	29109912	Rawofi L	2017-11-02	PeerJ	Genome-wide association study of pigmentary traits (skin and iris color) in individuals of East Asian ancestry.	Iris color (a* coordinate)	377 East Asian ancestry individuals	NA	6q22.31	intergenic	rs78001527-C	0.0739035	4E-6		0.686	[0.4-0.97] unit decrease	Illumina [at least 520076] (imputed)	N
1501	chr6	120173500	120173501	rs13218383	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		6q22.31	MAN1A1	rs13218383-C	0.664927	1E-10		0.00931833	[0.0065-0.0122] unit increase	Affymetrix [12370749]	N
1501	chr6	120173500	120173501	rs13218383	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6q22.31	NR	rs13218383-?	NR	1E-10				Affymetrix [~ 8270000] (imputed)	N
1501	chr6	120173500	120173501	rs13218383	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	6q22.31		rs13218383-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1501	chr6	120185664	120185665	rs9374842	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	6q22.31	MIR3144	rs9374842-T	0.7651	1E-6		0.0368	[0.022-0.052] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1501	chr6	120185664	120185665	rs9374842	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	6q22.31	NR	rs9374842-T	0.74468928820411	8E-8		0.016438592	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1501	chr6	120185664	120185665	rs9374842	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	6q22.31	LOC285762	rs9374842-T	0.748	7E-9		0.02	[0.013-0.026] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1501	chr6	120185664	120185665	rs9374842	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	6q22.31	LOC285762	rs9374842-T	0.748	1E-7	(EA)	0.019	[0.012-0.026] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1502	chr6	120200337	120200338	rs922376452	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6q22.31	NR	rs922376452-AT	0.0122	3E-9	(IGHG4)	0.1167	NR unit increase	Illumina [1671387] (imputed)	N
1502	chr6	120213879	120213880	rs2357760	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	6q22.31	NA	rs2357760-A	0.6738	4E-10		0.0113	[0.0078-0.0148] unit increase	NR [~ 27400000] (imputed)	N
1502	chr6	120213879	120213880	rs2357760	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	6q22.31	NA	rs2357760-A	0.6735	2E-16		0.0143	[0.011-0.018] unit increase	NR [~ 27400000] (imputed)	N
1502	chr6	120213879	120213880	rs2357760	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	6q22.31	NA	rs2357760-A	0.6735	2E-16		0.0143	[0.011-0.018] unit increase	NR [~ 27400000] (imputed)	N
1502	chr6	120213879	120213880	rs2357760	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	6q22.31	NR	rs2357760-G	NR	6E-8		0.015	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
1502	chr6	120213879	120213880	rs2357760	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	6q22.31	LOC285762, MIR3144	rs2357760-A	0.67	4E-9		0.015	[0.0091-0.0209] unit increase	Illumina [6108953] (imputed)	N
1502	chr6	120219179	120219180	rs2182717	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	6q22.31		rs2182717-A	NR	5E-9		0.0102	[0.0069-0.0135] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1502	chr6	120244064	120244064	rs202047822	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Stem cell growth factor beta levels	3,682 Finnish ancestry individuals	NA	6q22.31	NR	rs202047822-TA		9E-6		0.517	[0.29-0.75] SD units increase	NR [10700000] (imputed)	N
1502	chr6	120267537	120267538	rs6569095	30289880	Qi G	2018-10-05	PLoS Genet	Heritability informed power optimization (HIPO) leads to enhanced detection of genetic associations across multiple traits.	Social science traits (pleiotropy) (HIPO component 1)	up to 630,791 European ancestry individuals	NA	6q22.31	NR	rs6569095-?	NR	6E-9				NR [2100000]	N
1502	chr6	120267537	120267538	rs6569095	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Neuroticism	170,911 European ancestry individuals	NA	6q22.31	NR	rs6569095-A	0.623	2E-6		0.016725423	[0.0098-0.0236] unit decrease	Affymetrix [up to 6544775] (imputed)	N
1502	chr6	120271623	120271624	rs9320724	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on Townsend deprivation index (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	6q22.31		rs9320724-?	NR	4E-8				NR [NR]	N
1502	chr6	120274765	120274766	rs4574683	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on highest math class (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	6q22.31		rs4574683-?	NR	4E-8				NR [NR]	N
1502	chr6	120274776	120274777	rs4574684	26606652	Alarcon-Riquelme ME	2015-11-25	Arthritis Rheumatol	Genome-Wide Association Study in an Amerindian Ancestry Population Reveals Novel Systemic Lupus Erythematosus Risk Loci and the Role of European Admixture.	Systemic lupus erythematosus	862 Native American ancestry-enriched North American cases, 531 Native American ancestry-enriched South American cases, 1,973 Native American ancestry-enriched North American controls, 344 Native American ancestry-enriched South American controls	NA	6q22.31	Intergenic	rs4574684-G	0.208	7E-6		1.34	[1.19-1.5]	Illumina [580483] (imputed)	N
1502	chr6	120309994	120309995	rs7775754	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	6q22.31	NR	rs7775754-C	0.617456537732821	5E-10		0.019277759	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1503	chr6	120333510	120333511	rs6931445	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6q22.31	C6orf60	rs6931445-?	NR	1E-6	(cyclic adenosine monophosphate)	0.20528974	[0.12-0.29] unit increase	Affymetrix [at least 2500000] (imputed)	N
1503	chr6	120338607	120338608	rs57434630	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure in major depressive disorder	13,393 European ancestry cases, 9,487 European ancestry controls	NA	6q22.31	NR	rs57434630-A	0.833311	5E-6		1.1312217	[1.08-1.19]	Affymetrix [7791636] (imputed)	N
1503	chr6	120353649	120353650	rs73533071	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6q22.31	NR	rs73533071-T	0.01742	2E-8	(EPHA6)	0.03391	NR unit decrease	Illumina [1671387] (imputed)	N
1503	chr6	120364307	120364308	rs9401207	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6q22.31	C6orf60	rs9401207-?	NR	5E-6	(taurocholate)	0.2503242	[0.14-0.36] unit increase	Affymetrix [at least 2500000] (imputed)	N
1503	chr6	120371987	120371988	rs12198456	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	6q22.31	Intergenic	rs12198456-?	NR	2E-7		2.909	[NR]	Affymetrix [492217] (imputed)	N
1503	chr6	120384868	120384869	rs7750977	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	6q22.31	intergenic	rs7750977-T	NR	8E-6	(AA)			Illumina [up to 11995908] (imputed)	N
1503	chr6	120405728	120405729	rs58223466	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6q22.31	NR	rs58223466-C	0.02613	4E-9	(HBG1)	13.85	NR unit increase	Illumina [1671387] (imputed)	N
1503	chr6	120405728	120405729	rs58223466	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6q22.31	NR	rs58223466-C	0.02613	2E-8	(APRT)	0.1922	NR unit decrease	Illumina [1671387] (imputed)	N
1503	chr6	120405728	120405729	rs58223466	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6q22.31	NR	rs58223466-C	0.02613	1E-9	(HINT1)	0.2246	NR unit decrease	Illumina [1671387] (imputed)	N
1503	chr6	120405728	120405729	rs58223466	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6q22.31	NR	rs58223466-C	0.02613	1E-9	(HBD)	4.473	NR unit increase	Illumina [1671387] (imputed)	N
1503	chr6	120405728	120405729	rs58223466	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6q22.31	NR	rs58223466-C	0.02613	1E-11	(TTN)	1.443	NR unit increase	Illumina [1671387] (imputed)	N
1504	chr6	120475583	120475584	rs56804048	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	6q22.31	Intergenic	rs56804048-C	0.99	8E-7	(AA)	0.089	unit increase	Illumina [NR] (imputed)	N
1504	chr6	120497185	120497186	rs56392554	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	6q22.31	Intergenic	rs56392554-G	0.989	3E-6	(AA)	0.08	unit increase	Illumina [NR] (imputed)	N
1504	chr6	120509190	120509191	rs155162	32635940	Nudel R	2020-07-07	BMC Neurosci	Quantitative genome-wide association analyses of receptive language in the Danish High Risk and Resilience Study.	Parent of origin effect on receptive language ability (paternal)	400 European ancestry children	NA	6q22.31	intergenic	rs155162-T	NR	4E-6		8.7	NR unit decrease	Illumina [up to 299604]	N
1506	chr6	120741741	120741741	rs397934896	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Lean body mass	3,399 whole genome sequenced individuals, 11,801 European ancestry individuals	10,676 European ancestry individuals	6q22.31	RNU6-214P	rs397934896-CT	0.1869	4E-6		0.0702	[0.04-0.1] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1506	chr6	120763990	120763991	rs73527062	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	6q22.31	Intergenic	rs73527062-T	0.984	4E-6	(AA)	0.482	NR unit increase	Illumina [NR] (imputed)	N
1507	chr6	120947690	120947691	rs1158317	30940143	Zhu Z	2019-04-02	Respir Res	Genetic overlap of chronic obstructive pulmonary disease and cardiovascular disease-related traits: a large-scale genome-wide cross-trait analysis.	Chronic obstructive pulmonary disease or resting heart rate (pleiotropy)	12,550 European and unknown ancestry chronic obstructive pulmonary disease cases, 46,368 European and unknown ancestry controls, 458,969 European ancestry individuals	NA	6q22.31	C6orf170	rs1158317-?	NR	1E-11				Affymetrix [up to 7325140] (imputed)	N
1507	chr6	120950371	120950372	rs9490015	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Lateral ventricle temporal horn volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	6q22.31	NR	rs9490015-?		2E-6				Illumina [4322238] (imputed)	N
1508	chr6	121048600	121048601	rs180780725	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Coronary artery disease in hypertension	816 Korean ancestry cases, 15,488 Korean ancestry controls	NA	6q22.31		rs180780725-T	0.01371	9E-6		2.065	[1.5-2.842]	Affymetrix [7975321] (imputed)	N
1508	chr6	121069783	121069784	rs12210419	31712607	Nudel R	2019-11-11	Transl Psychiatry	A large-scale genomic investigation of susceptibility to infection and its association with mental disorders in the Danish population.	Hospital contact for infections	21,728 Danish ancestry cases with psychiatric disorders, 6,744 Danish ancestry cases, 24,161 Danish ancestry controls with psychiatric disorders, 12,901 Danish ancestry controls	NA	6q22.31		rs12210419-G	NR	9E-6		1.0618	[1.04-1.09]	Illumina [11600722] (imputed)	N
1508	chr6	121098456	121098457	rs2817937	20195514	Pillas D	2010-02-26	PLoS Genet	Genome-wide association study reveals multiple loci associated with primary tooth development during infancy.	Primary tooth development (number of teeth)	5,752 European ancestry related individuals	NA	6q22.31	intergenic	rs2817937-C	0.12	3E-6				Illumina [300766]	N
1508	chr6	121100136	121100137	rs2789066	20205591	Pelak K	2010-04-15	J Infect Dis	Host determinants of HIV-1 control in African Americans.	HIV-1 viral setpoint	515 African American cases	NA	6q22.31	RP11-100A16.1	rs2789066-?	0.13	9E-6				Illumina [1212217]	N
1509	chr6	121189801	121189802	rs2789047	26030142	Van Driest SL	2015-06-01	PLoS One	Genome-Wide Association Study of Serum Creatinine Levels during Vancomycin Therapy.	Peak creatinine levels in vancomycin therapy	489 European ancestry individuals	439 European ancestry individuals	6q22.31	GJA1, C6orf170, TBC1D32	rs2789047-A	0.28	1E-7		0.053	[0.033-0.073] unit decrease	Illumina [711284]	N
1510	chr6	121334769	121334770	rs1318322	30531953	International League Against Epilepsy Consortium on Complex Epilepsies	2018-12-10	Nat Commun	Genome-wide mega-analysis identifies 16 loci and highlights diverse biological mechanisms in the common epilepsies.	Focal epilepsy (with hippocampal sclerosis)	709 European ancestry cases, 24,218 European ancestry controls	NA	6q22.31	GJA1	rs1318322-G	0.14	7E-9		5.8	NR unit increase	Affymetrix, Illumina [~ 5000000] (imputed)	N
1510	chr6	121339178	121339179	rs1343075	20125193	Cirulli ET	2010-02-03	Eur J Hum Genet	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American individuals, up to 74 South Asian ancestry individuals	NA	6q22.31	C6orf170	rs1343075-?	NR	2E-6	(Immediate Story Recall)			Illumina [up to 563855]	N
1513	chr6	121683072	121683073	rs118129203	33824429	Fjukstad KK	2021-04-06	Pharmacogenomics J	Genetic variants associated with cardiometabolic abnormalities during treatment with selective serotonin reuptake inhibitors: a genome-wide association study.	LDL levels x SSRI levels (escitalopram or citalopram) interaction in schizophrenia or bipolar disorder	181 European ancestry individuals	NA	6q22.31	RNU6-1286P	rs118129203-C	NR	4E-6		18.2848	[10.79-25.78] unit decrease	Illumina [NR] (imputed)	N
1513	chr6	121728043	121728044	rs72965482	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	6q22.31	GJA1	rs72965482-T	0.094	2E-8		0.0114	[0.0075-0.0153] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
1513	chr6	121730721	121730722	rs17083533	23583979	den Hoed M	2013-04-14	Nat Genet	Identification of heart rate-associated loci and their effects on cardiac conduction and rhythm disorders.	Heart rate	85,787 European ancestry individuals, 6,568 Indian Asian ancestry indiviudals	88,823 European ancestry individuals	6q22.31	GJA1	rs17083533-A	0.077	1E-8	(Conditional on rs1015451, rs11154027)	0.74	[0.49-0.99] unit increase	Affymetrix, Illumina [2516789] (imputed)	N
1513	chr6	121748541	121748542	rs11154022	20639392	Eijgelsheim M	2010-07-16	Hum Mol Genet	Genome-wide association analysis identifies multiple loci related to resting heart rate.	Resting heart rate	38,991 European ancestry individuals	NA	6q22.31	GJA1	rs11154022-A	0.33	7E-8		5.8	[3.74-7.86] ms increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1513	chr6	121758511	121758512	rs3792943	27798624	Eppinga RN	2016-10-31	Nat Genet	Identification of genomic loci associated with resting heart rate and shared genetic predictors with all-cause mortality.	Resting heart rate	127,919 European ancestry individuals, 2,478 Asian ancestry individuals, 1,734 Black individuals, 684 Mixed ancestry individuals, 1,436 individuals	130,795 European ancestry individuals	6q22.31	NR	rs3792943-T	0.51	3E-17		0.36	[0.28-0.44] unit increase	Affymetrix [19941912] (imputed)	N
1513	chr6	121762087	121762088	rs57347370	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Respiratory diseases	approximately 459,000 European ancestry individuals	NA	6q22.31		rs57347370-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1513	chr6	121762087	121762088	rs57347370	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	6q22.31		rs57347370-?	NR	1E-15				NR [~ 8900000] (imputed)	N
1513	chr6	121764257	121764258	rs10456940	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	6q22.31	NR	rs10456940-C	0.250401	9E-11		0.013745	[0.0096-0.0179] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
1514	chr6	121766285	121766286	rs11961755	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	6q22.31	GJA1	rs11961755-G	0.751952	6E-10		0.0137125	[0.0094-0.018] unit increase	Affymetrix [NR] (imputed)	N
1514	chr6	121772982	121772983	rs12204909	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	6q22.31		rs12204909-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1514	chr6	121777380	121777381	rs12528775	29703947	Jawinski P	2018-04-27	Mol Psychiatry	Human brain arousal in the resting state: a genome-wide association study.	Resting-state electroencephalogram vigilance	1,877 European ancestry individuals	NA	6q22.31	U4	rs12528775-T	0.703	8E-6	(Stability score)	0.6335	[0.36-0.91] unit increase	Affymetrix [8042262] (imputed)	N
1514	chr6	121781389	121781390	rs11154027	31615970	Rodas G	2019-10-14	Int J Sports Physiol Perform	Genomic Prediction of Tendinopathy Risk in Elite Team Sports.	Tendinopathy	181 European ancestry cases, 12 African American cases, 5 Brazilian cases, 1 Asian ancestry cases, 147 European ancestry controls, 9 African American controls, 7 Brazilian controls, 2 Asian ancestry controls	NA	6q22.31	GJA1	rs11154027-A	NR	1E-6		2.11	[1.07-4.19]	Illumina [1419369] (imputed)	N
1514	chr6	121781389	121781390	rs11154027	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Pulse pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	6q22.31	GJA1	rs11154027-T	0.47	1E-10		0.207	[0.15-0.27] unit increase	Affymetrix [~ 9800000] (imputed)	N
1514	chr6	121781389	121781390	rs11154027	23583979	den Hoed M	2013-04-14	Nat Genet	Identification of heart rate-associated loci and their effects on cardiac conduction and rhythm disorders.	Heart rate	85,787 European ancestry individuals, 6,568 Indian Asian ancestry indiviudals	88,823 European ancestry individuals	6q22.31	GJA1	rs11154027-C	0.567	7E-12	(Conditional on rs1015451, rs17083533)	0.32	[0.22-0.42] unit increase	Affymetrix, Illumina [2516789] (imputed)	N
1514	chr6	121781933	121781934	rs56673456	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	6q22.31		rs56673456-G	0.318782	1E-9		0.0237349	[0.016-0.031] unit decrease	Illumina [13476299] (imputed)	N
1514	chr6	121781933	121781934	rs56673456	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	119,629 East Asian ancestry individuals	NA	6q22.31	NR	rs56673456-C	0.684992	6E-10		0.028005	[0.019-0.037] SD units increase	Affymetrix, Illumina [16286228] (imputed)	N
1514	chr6	121782708	121782709	rs1002955	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	6q22.31		rs1002955-T	0.318202	1E-8		0.0221207	[0.015-0.03] unit decrease	Illumina [13476266] (imputed)	N
1514	chr6	121786090	121786091	rs12196049	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	6q22.31		rs12196049-C	NR	6E-17		0.017	[0.013-0.021] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
1514	chr6	121786090	121786091	rs12196049	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	6q22.31		rs12196049-A	0.801	7E-16		0.11	[0.08-0.14] % increase	Affymetrix [NR] (imputed)	N
1514	chr6	121786090	121786091	rs12196049	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	6q22.31	NR	rs12196049-C	NR	2E-9		0.019	[0.013-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
1514	chr6	121786090	121786091	rs12196049	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	6q22.31		rs12196049-C	0.198832	1E-17		0.02344308	[0.018-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1514	chr6	121786090	121786091	rs12196049	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q22.31	NR	rs12196049-C	0.212663	3E-12				Affymetrix, Illumina [23114412] (imputed)	N
1514	chr6	121786090	121786091	rs12196049	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	6q22.31		rs12196049-?	NR	2E-19				NR [~ 8900000] (imputed)	N
1514	chr6	121786090	121786091	rs12196049	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	6q22.31		rs12196049-?	NR	3E-20				NR [~ 8900000] (imputed)	N
1514	chr6	121786326	121786327	rs12196172	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	6q22.31		rs12196172-G	NR	6E-24		0.0236	[0.019-0.028] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
1514	chr6	121786326	121786327	rs12196172	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	6q22.31		rs12196172-G	NR	2E-20		0.0217	[0.017-0.026] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
1514	chr6	121786326	121786327	rs12196172	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	6q22.31		rs12196172-G	NR	6E-9		0.0141	[0.0094-0.0188] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
1514	chr6	121786326	121786327	rs12196172	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	6q22.31	NR	rs12196172-G	0.200766	5E-23		0.022832	[0.018-0.027] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
1514	chr6	121786326	121786327	rs12196172	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	6q22.31		rs12196172-?	NR	5E-12				NR [~ 8900000] (imputed)	N
1514	chr6	121787901	121787902	rs398094540	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	6q22.31		rs398094540-G	NR	4E-8		0.0126	[0.0081-0.0171] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
1514	chr6	121787901	121787902	rs398094540	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	6q22.31		rs398094540-G	NR	2E-11		0.0171	[0.012-0.022] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
1514	chr6	121788130	121788131	rs4481462	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	6q22.31	NR	rs4481462-T	0.200106	3E-31		0.026215	[0.022-0.031] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1514	chr6	121788348	121788349	rs4579388	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q22.31	NR	rs4579388-A	0.223453	2E-24				Affymetrix, Illumina [24332387] (imputed)	N
1514	chr6	121788971	121788972	rs12215332	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	6q22.31	NR	rs12215332-A	0.199755	5E-13		0.01741	[0.013-0.022] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
1514	chr6	121788971	121788972	rs12215332	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q22.31	NR	rs12215332-A	0.218613	2E-33				Affymetrix, Illumina [24246363] (imputed)	N
1514	chr6	121788971	121788972	rs12215332	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q22.31	NR	rs12215332-A	0.221725	7E-23				Affymetrix, Illumina [20825802] (imputed)	N
1514	chr6	121788971	121788972	rs12215332	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	6q22.31	NR	rs12215332-A	0.200819	7E-20		0.021778	[0.017-0.026] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
1514	chr6	121793550	121793551	rs9490289	34050765	Zhang L	2021-05-29	J Clin Endocrinol Metab	Joint genome-wide association analyses identified 49 novel loci for age at natural menopause.	Age at menopause	181,219 European ancestry individuals, 43,861 East Asian ancestry individuals	NA	6q22.31		rs9490289-A	0.66	8E-11		0.08	unit decrease	Illumina [2093892] (imputed)	N
1514	chr6	121793550	121793551	rs9490289	34050765	Zhang L	2021-05-29	J Clin Endocrinol Metab	Joint genome-wide association analyses identified 49 novel loci for age at natural menopause.	Age at menopause	181,219 European ancestry individuals	NA	6q22.31		rs9490289-A	0.66	3E-8		0.08	unit decrease	Illumina [2398641] (imputed)	N
1514	chr6	121793598	121793599	rs28557115	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	6q22.31		rs28557115-A	0.195936	4E-27		0.0266974	[0.022-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
1514	chr6	121793598	121793599	rs28557115	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	6q22.31		rs28557115-A	0.195905	3E-18		0.023376865	[0.018-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
1514	chr6	121801376	121801377	rs34039083	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antimigraine preparations)	5,521 European ancestry cases, 114,323 European ancestry controls, 387 East Asian ancestry cases, 178,339 East Asian ancestry controls	NA	6q22.31		rs34039083-A	NR	1E-9		0.1607	[0.11-0.21] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1514	chr6	121808198	121808199	rs74809038	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (antimigraine preparations)	5,521 European ancestry cases, 114,323 European ancestry controls	NA	6q22.31	U4	rs74809038-G	0.154414	4E-9		0.15841043	[0.11-0.21] unit increase	Affymetrix [7288503] (imputed)	N
1514	chr6	121810582	121810583	rs145681012	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	6q22.31		rs145681012-T	NR	5E-10		0.0529	[0.036-0.07] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1514	chr6	121814702	121814703	rs10872223	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	6q22.31		rs10872223-T	0.183305	2E-24		0.029373499	[0.024-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
1514	chr6	121814702	121814703	rs10872223	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	6q22.31		rs10872223-T	0.183277	2E-10		0.018520718	[0.013-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1514	chr6	121815686	121815687	rs716013	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6q22.31		rs716013-T	0.183454	6E-32		0.03339493	[0.028-0.039] unit decrease	Affymetrix [93095623] (imputed)	N
1514	chr6	121816878	121816879	rs9490306	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Migraine	53,109 European ancestry cases, 230,876 European ancestry controls	NA	6q22.31	intergenic	rs9490306-?	NR	6E-6				Illumina [13763073] (imputed)	N
1514	chr6	121816878	121816879	rs9490306	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine without aura	7,107 European ancestry cases, 69,427 European ancestry controls	NA	6q22.31	intergenic	rs9490306-A	0.14	3E-7		1.18	[1.11-1.25]	Affymetrix, Illumina [~ 2300000] (imputed)	N
1514	chr6	121816878	121816879	rs9490306	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NA	6q22.31	intergenic	rs9490306-A	0.14	7E-6		1.08	[1.05-1.12]	Affymetrix, Illumina [~ 2300000] (imputed)	N
1514	chr6	121822493	121822494	rs28581202	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	GJA1	rs28581202-G	0.847423	8E-10	(128 ms)	0.0448895	[0.03-0.06] unit increase	Affymetrix [10000000] (imputed)	N
1514	chr6	121822493	121822494	rs28581202	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	GJA1	rs28581202-G	0.847423	6E-12	(130 ms)	0.0502766	[0.035-0.065] unit increase	Affymetrix [10000000] (imputed)	N
1514	chr6	121822493	121822494	rs28581202	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	GJA1	rs28581202-G	0.847423	1E-8	(146 ms)	0.0415632	[0.027-0.056] unit increase	Affymetrix [10000000] (imputed)	N
1514	chr6	121822493	121822494	rs28581202	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	GJA1	rs28581202-G	0.847423	1E-10	(132 ms)	0.0465895	[0.032-0.061] unit increase	Affymetrix [10000000] (imputed)	N
1514	chr6	121837313	121837314	rs9385199	30679814	van Setten J	2019-01-24	Eur J Hum Genet	Genome-wide association meta-analysis of 30,000 samples identifies seven novel loci for quantitative ECG traits.	RR interval (heart rate)	2,006 Erasmus Rucphen Family (founder/genetic isolate) individuals, 26,692 European ancestry individuals	NA	6q22.31	GJA1	rs9385199-G	0.584	3E-9		6.672	[4.46-8.89] unit increase	Affymetrix, Illumina [at least 19000000] (imputed)	N
1514	chr6	121845678	121845679	rs34995334	32632093	Guo Y	2020-07-06	Nat Commun	A genome-wide cross-phenotype meta-analysis of the association of blood pressure with migraine.	Migraine without aura and/or diastolic blood pressure	757,601 European ancestry individuals with blood pressure measurements, up to 59,674 European ancestry migraine cases, 316,078 European ancestry controls	NA	6q22.31	NR	rs34995334-?	NR	4E-8				NR [up to 7000000]	N
1514	chr6	121846037	121846038	rs28455731	32632093	Guo Y	2020-07-06	Nat Commun	A genome-wide cross-phenotype meta-analysis of the association of blood pressure with migraine.	Migraine and/or diastolic blood pressure	757,601 European ancestry individuals with blood pressure measurements, 59,674 European ancestry migraine cases, 316,078 European ancestry controls	NA	6q22.31	NR	rs28455731-?	NR	8E-11				NR [up to 7000000]	N
1514	chr6	121846037	121846038	rs28455731	27322543	Gormley P	2016-06-20	Nat Genet	Meta-analysis of 375,000 individuals identifies 38 susceptibility loci for migraine.	Migraine	59,674 European ancestry cases, 316,078 European ancestry controls	NA	6q22.31	GJA1	rs28455731-T	0.16	7E-9		1.06	[1.04-1.08]	Affymetrix, Illumina, Perlegen [8094889] (imputed)	N
1514	chr6	121847248	121847249	rs7757975	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	6q22.31		rs7757975-T	0.155309	9E-10		0.018661382	[0.013-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1514	chr6	121856793	121856794	rs9375037	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	6q22.31		rs9375037-?	NR	1E-8		0.0117059	[0.0077-0.0157] unit increase	NR [6912294] (imputed)	N
1514	chr6	121859498	121859499	rs9490317	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	417,580 European ancestry individuals	NA	6q22.31		rs9490317-T	0.554106	3E-8		0.011	[0.0071-0.0149] unit increase	NR [7250403] (imputed)	N
1514	chr6	121860206	121860207	rs9490318	29397368	Meng W	2018-01-31	EBioMedicine	A Genome-Wide Association Study Finds Genetic Associations with Broadly-Defined Headache in UK Biobank (N=223,773).	Headache	74,461 British ancestry cases, 149,321 British ancestry controls	NA	6q22.31	Intergenic	rs9490318-T	NR	2E-10		0.0124	[0.0087-0.0161] unit increase	Affymetrix [9304965] (imputed)	N
1514	chr6	121867055	121867056	rs58972372	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	6q22.31	RNU4-76P	rs58972372-A	0.147602	3E-9		0.018566359	[0.012-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1514	chr6	121877706	121877707	rs149252565	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	6q22.31		rs149252565-T	NR	2E-12		0.0176	[0.013-0.022] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1514	chr6	121877964	121877965	rs10456943	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6q22.31		rs10456943-?	NR	9E-9				NR [~ 8900000] (imputed)	N
1514	chr6	121883199	121883200	rs9398642	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	6q22.31	NR	rs9398642-T	NR	5E-10		0.0217	[0.015-0.029] unit decrease	Affymetrix [9000000] (imputed)	N
1514	chr6	121883199	121883200	rs9398642	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	6q22.31		rs9398642-T	0.144024	1E-9		0.019196218	[0.013-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1514	chr6	121883199	121883200	rs9398642	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q22.31	NR	rs9398642-T	0.164591	5E-11				Affymetrix, Illumina [24588908] (imputed)	N
1515	chr6	121902868	121902869	rs4541776	18464913	Melzer D	2008-05-09	PLoS Genet	A genome-wide association study identifies protein quantitative trait loci (pQTLs).	Protein quantitative trait loci	1,200 European ancestry individuals	up to 4,590 European ancestry individuals	6q22.31	GJA1	rs4541776-?	0.33	2E-6	(GGT)			Illumina [496032]	N
1515	chr6	121935601	121935602	rs11750990	27802415	Salvi E	2016-10-31	Hypertension	Genome-Wide and Gene-Based Meta-Analyses Identify Novel Loci Influencing Blood Pressure Response to Hydrochlorothiazide.	Systolic blood pressure response to hydrochlorothiazide in hypertension	1,739 European ancestry individuals	430 African American individuals	6q22.31	GJA1, HSF2	rs11750990-A	0.96	8E-6	(EA)	2.44	[NR] mmHg increase	Affymetrix, Illumina [up to 2500000] (imputed)	N
1515	chr6	122021881	122021882	rs9482188	29615537	Kulminski AM	2018-03-01	Aging (Albany NY)	Strong impact of natural-selection-free heterogeneity in genetics of age-related phenotypes.	Heart rate	up to 33,431 European ancestry individuals	NA	6q22.31	intergenic	rs9482188-A	0.031	4E-6		1.7415215	unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1516	chr6	122085393	122085394	rs9375060	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip	15 Asian ancestry cases, 13 European ancestry cases, 15 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	6q22.31	NR	rs9375060-?	NR	3E-7		4.93	[3.86-6.3]	Illumina [539000] (imputed)	N
1516	chr6	122089704	122089704	rs58730006	34753499	Hanscombe KB	2021-11-09	Genome Med	The genetic case for cardiorespiratory fitness as a clinical vital sign and the routine prescription of physical activity in healthcare.	Cardiorespiratory fitness (vo2 max)	70,783 European ancestry individuals	NA	6q22.31		rs58730006-A	0.9	3E-9		0.047	[0.031-0.063] unit increase	Affymetrix [8918919] (imputed)	N
1516	chr6	122099151	122099152	rs9401451	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	6q22.31	HSF2	rs9401451-G	0.900	3E-11		1.08	[1.05-1.10]	Illumina [34740186] (imputed)	N
1516	chr6	122101754	122101755	rs2091624	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	6q22.31	GJA1	rs2091624-G	0.90142	6E-16		0.0248536	[0.019-0.031] unit increase	NR [13737936] (imputed)	N
1516	chr6	122101754	122101755	rs2091624	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	6q22.31		rs2091624-?	NR	1E-15				NR [~ 8900000] (imputed)	N
1516	chr6	122114450	122114451	rs9320841	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	6q22.31		rs9320841-G	NR	2E-9		0.0099	[0.0068-0.013] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1516	chr6	122114450	122114451	rs9320841	23183192	Deo R	2012-11-23	Heart Rhythm	Common genetic variation near the connexin-43 gene is associated with resting heart rate in African Americans: a genome-wide association study of 13,372 participants.	Resting heart rate	13,372 African American individuals		6q22.31	GJA1, HMGB3P18	rs9320841-?	NR	5E-15	Random effects analysis	13.0	[9.67-16.33] ms increase	Affymetrix, Illumina [2954965] (imputed)	N
1516	chr6	122121004	122121005	rs1919865	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	6q22.31		rs1919865-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1516	chr6	122121004	122121005	rs1919865	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	6q22.31	intergenic	rs1919865-T	0.7563	4E-20		0.3173	[0.25-0.38] mmHg increase	Affymetrix [NR] (imputed)	N
1516	chr6	122125426	122125427	rs12208772	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Diastolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	6q22.31	intergenic	rs12208772-C	0.6101	2E-13		0.2679	[0.2-0.34] mmHg decrease	Affymetrix [NR] (imputed)	N
1516	chr6	122131484	122131485	rs1015451	23583979	den Hoed M	2013-04-14	Nat Genet	Identification of heart rate-associated loci and their effects on cardiac conduction and rhythm disorders.	Heart rate	85,787 European ancestry individuals, 6,568 Indian Asian ancestry indiviudals	88,823 European ancestry individuals	6q22.31	GJA1	rs1015451-C	0.102	1E-33		0.713	[0.57-0.85] unit increase	Affymetrix, Illumina [2516789] (imputed)	N
1516	chr6	122136119	122136119	rs112521333	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6q22.31		rs112521333-?	NR	3E-16		0.0288678	[0.022-0.036] unit increase	Affymetrix [20259828] (imputed)	N
1516	chr6	122145891	122145892	rs9372667	30679814	van Setten J	2019-01-24	Eur J Hum Genet	Genome-wide association meta-analysis of 30,000 samples identifies seven novel loci for quantitative ECG traits.	RR interval (heart rate)	2,006 Erasmus Rucphen Family (founder/genetic isolate) individuals, 26,692 European ancestry individuals	NA	6q22.31	GJA1	rs9372667-G	0.106	1E-13		12.924	[9.52-16.33] unit decrease	Affymetrix, Illumina [at least 19000000] (imputed)	N
1516	chr6	122146033	122146034	rs9398652	20639392	Eijgelsheim M	2010-07-16	Hum Mol Genet	Genome-wide association analysis identifies multiple loci related to resting heart rate.	Resting heart rate	38,991 European ancestry individuals	NA	6q22.31	GJA1	rs9398652-A	0.10	4E-15		12.6	[9.54-15.66] ms decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1516	chr6	122148561	122148562	rs763076	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	6q22.31	GJA1	rs763076-G	0.1279	5E-17		0.8503	[0.65-1.05] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1516	chr6	122158269	122158270	rs12110693	19396169	Cho YS	2009-04-26	Nat Genet	A large-scale genome-wide association study of Asian populations uncovers genetic factors influencing eight quantitative traits.	Biomedical quantitative traits	8,842 Korean ancestry individuals	7,861 Korean ancestry individuals	6q22.31	LOC644502	rs12110693-A	0.49	2E-9	(pulse rate)	0.66	[0.45-0.87] beats per minute increase	Affymetrix [2156535] (imputed)	N
1517	chr6	122168137	122168138	rs1320761	29769521	Ramirez J	2018-05-16	Nat Commun	Thirty loci identified for heart rate response to exercise and recovery implicate autonomic nervous system.	Resting heart rate	67,062 European ancestry individuals	NA	6q22.31	GJA1	rs1320761-C	0.901003	1E-24		1.10133	[0.89-1.31] unit decrease	Affymetrix [~ 7800000] (imputed)	N
1517	chr6	122168137	122168138	rs1320761	27798624	Eppinga RN	2016-10-31	Nat Genet	Identification of genomic loci associated with resting heart rate and shared genetic predictors with all-cause mortality.	Resting heart rate	127,919 European ancestry individuals, 2,478 Asian ancestry individuals, 1,734 Black individuals, 684 Mixed ancestry individuals, 1,436 individuals	130,795 European ancestry individuals	6q22.31	GJA1	rs1320761-T	0.11	1E-64		0.9018	[0.8-1.01] unit increase	Affymetrix [19941912] (imputed)	N
1517	chr6	122188471	122188472	rs9372668	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	6q22.31		rs9372668-A	NR	5E-21		0.0339	[0.027-0.041] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
1517	chr6	122192591	122192592	rs12206253	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	6q22.31	GJA1, HSF2	rs12206253-C		1E-12		0.287	unit increase	Affymetrix [at least 2696785] (imputed)	N
1517	chr6	122193875	122193876	rs11752784	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	6q22.31		rs11752784-G	0.097558	7E-10		0.023145786	[0.016-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
1517	chr6	122229535	122229536	rs9482193	29346644	Yan Q	2018-01-15	Hum Mol Genet	Genome-wide Analysis of Disease Progression in Age-related Macular Degeneration.	Disease progression in age-related macular degeneration	1,105 progressed eyes and 3,912 non-progressed eyes from 2,721 European ancestry individuals	NA	6q22.31	GJA1, HSF2	rs9482193-T	0.49	9E-7		1.3		Illumina [8974355] (imputed)	N
1517	chr6	122268114	122268115	rs2139841	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	6q22.31	NR	rs2139841-A	0.299717	9E-10		0.020475	[0.014-0.027] unit increase	NR [19129689] (imputed)	N
1517	chr6	122287989	122287990	rs6925750	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	6q22.31	HSF2	rs6925750-T	0.8841	7E-10		0.1657	[0.11-0.22] unit increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1518	chr6	122295243	122295244	rs12209838	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	6q22.31		rs12209838-T	0.159838	1E-10		0.0197179	[0.014-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1518	chr6	122318713	122318714	rs150057671	27149984	Degenhardt F	2016-05-05	Hum Mol Genet	Genome-wide association study of serum coenzyme Q10 levels identifies susceptibility loci linked to neuronal diseases.	Coenzyme Q10 levels	up to 1,300 European ancestry individuals	NA	6q22.31	Intergenic	rs150057671-A		2E-6		0.034	[0.02-0.048] unit increase	Affymetrix, Illumina [up to 17017474] (imputed)	N
1518	chr6	122336567	122336568	rs17084111	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	6q22.31	Intergenic	rs17084111-?	NR	6E-6		2.15	[NR]	Affymetrix [492217] (imputed)	N
1518	chr6	122339303	122339304	rs187207161	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	445,360 European ancestry individuals	225,112 European ancestry individuals	6q22.31	HMGB3P18	rs187207161-C	0.0098	2E-10		0.056506313	[0.039-0.074] unit decrease	Illumina [up to 29454346] (imputed)	N
1518	chr6	122350384	122350385	rs2679649	26480920	Sung YJ	2015-10-20	Int J Obes (Lond)	Genome-wide association studies suggest sex-specific loci associated with abdominal and visceral fat.	Subcutaneous adipose tissue	1,152 European ancestry males, 1,361 European ancestry females	NA	6q22.31	HSF2	rs2679649-A	0.94	2E-7	(women)	77.55	[NR] unit decrease	Affymetrix, Illumina [2473256] (imputed)	N
1518	chr6	122388850	122388851	rs1402538	25631615	Springelkamp H	2015-01-28	Genet Epidemiol	Meta-analysis of Genome-Wide Association Studies Identifies Novel Loci Associated With Optic Disc Morphology.	Optic cup area	15,087 European ancestry individuals, 2,131 Erasmus Rucphen Family individuals, 2,363 Chinese ancestry individuals, 2,225 Malay ancestry individuals, 2,025 Indian ancestry individuals	NA	6q22.31	HSF2	rs1402538-A	0.38	4E-9		0.014	[0.010-0.018] unit decrease	Affymetrix, Illumina [2500000] (imputed)	N
1518	chr6	122388850	122388851	rs1402538	25631615	Springelkamp H	2015-01-28	Genet Epidemiol	Meta-analysis of Genome-Wide Association Studies Identifies Novel Loci Associated With Optic Disc Morphology.	Optic cup area	15,087 European ancestry individuals, 2,131 Erasmus Rucphen Family individuals, 2,363 Chinese ancestry individuals, 2,225 Malay ancestry individuals, 2,025 Indian ancestry individuals	NA	6q22.31	HSF2	rs1402538-A	0.38	1E-6	(EA)	0.014	[0.0081-0.0199] unit decrease	Affymetrix, Illumina [2500000] (imputed)	N
1518	chr6	122389905	122389906	rs868155	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atrial fibrillation/atrial flutter	29,212 European ancestry cases, 400,539 European ancestry controls, 4,150 East Asian ancestry cases, 155,540 East Asian ancestry controls	NA	6q22.31		rs868155-T	NR	1E-10		0.064	[0.045-0.083] unit decrease	Affymetrix, Illumina [25830072] (imputed)	N
1518	chr6	122389905	122389906	rs868155	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	6q22.31	GJA1, HSF2	rs868155-C	0.65	2E-16	(EA)	1.07	[1.05-1.08]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1518	chr6	122389954	122389955	rs868153	25241763	Springelkamp H	2014-09-22	Nat Commun	Meta-analysis of genome-wide association studies identifies novel loci that influence cupping and the glaucomatous process.	Vertical cup-disc ratio	18,963 European ancestry individuals, 2,131 Erasmus Rucphen individuals	2,453 Chinese ancestry individuals, 2,026 Indian ancestry individuals, 2,305 Malay ancestry individuals	6q22.31	HSF2	rs868153-G	NR	1E-8		0.007	[0.0050-0.0090] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1518	chr6	122391083	122391084	rs1357051	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Vertical cup-disc ratio	25,180 European ancestry individuals	NA	6q22.31	HSF2	rs1357051-T	0.386	1E-8		0.008	[0.006-0.01] unit decrease	Affymetrix, Illumina [11901698] (imputed)	N
1518	chr6	122392135	122392136	rs13191450	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	6q22.31	GJA1, HSF2	rs13191450-A	0.66	9E-21		1.07	[1.06-1.09]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1518	chr6	122392510	122392511	rs2684249	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (multi-trait analysis)	90,939 European ancestry individuals	NA	6q22.31	GJA1, HSF2	rs2684249-T	0.59	7E-14		0.0065	NR unit increase	Affymetrix, Illumina [8002429] (imputed)	N
1518	chr6	122392510	122392511	rs2684249	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (adjusted for vertical disc diameter)	67,040 British ancestry individuals	NA	6q22.31	HSF2	rs2684249-T	0.59	1E-9		0.00559	[0.0038-0.0074] unit increase	Affymetrix [at least 8002429] (imputed)	N
1518	chr6	122392510	122392511	rs2684249	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Optic cup area	20,353 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	7,333 Asian ancestry individuals	6q22.31	HSF2	rs2684249-C	NR	3E-8		0.012	[0.0081-0.0159] unit decrease	Affymetrix, Illumina [~ 8000000] (imputed)	N
1518	chr6	122392510	122392511	rs2684249	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Optic cup area	20,353 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	7,333 Asian ancestry individuals	6q22.31	HSF2	rs2684249-C	NR	2E-6	(EA)	0.012	[0.0061-0.0179] unit decrease	Affymetrix, Illumina [~ 8000000] (imputed)	N
1518	chr6	122403558	122403559	rs13195459	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	6q22.31	HSF2	rs13195459-G	0.638	4E-19		1.06	[1.05-1.08]	Illumina [34740186] (imputed)	N
1518	chr6	122414156	122414157	rs13219206	28416822	Low SK	2017-04-17	Nat Genet	Identification of six new genetic loci associated with atrial fibrillation in the Japanese population.	Atrial fibrillation	8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls	3,120 Japanese ancestry cases, 125,064 Japanese ancestry controls, 15,993 European ancestry cases, 113,719 European ancestry controls	6q22.31	GJA1, HSF2	rs13219206-C	0.72	4E-8	(Japanese)	1.144	[1.091-1.198]	Illumina [5018049] (imputed)	N
1518	chr6	122416340	122416341	rs2606618	25085501	Bunyavanich S	2014-08-02	BMC Med Genomics	Integrated genome-wide association, coexpression network, and expression single nucleotide polymorphism analysis identifies novel pathway in allergic rhinitis.	Allergic rhinitis in non-asthmatics	249 European ancestry cases, 164 Latino cases, 248 African American/Afro-Caribbean cases, 674 European ancestry controls, 588 Latino controls, 464 African American/Afro-Caribbean controls	NA	6q22.31	NR	rs2606618-T	0.17	4E-7		1.6	[1.33-1.92]	Affymetrix, Illumina [NR] (imputed)	N
1519	chr6	122432411	122432412	rs1379096	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Optic cup area	24,493 European ancestry individuals	NA	6q22.31	HSF2	rs1379096-G	0.352	3E-8		0.013	[0.0091-0.0169] mm2 decrease	Affymetrix, Illumina [11830838] (imputed)	N
1519	chr6	122439039	122439040	rs2315817	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	6q22.31		rs2315817-A	0.28	2E-14		7.65	z score increase	Affymetrix [9061022] (imputed)	N
1519	chr6	122448054	122448055	rs1350229	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	6q22.31	NR	rs1350229-C	0.2852	2E-9				NR [9056863] (imputed)	N
1519	chr6	122463190	122463191	rs12664873	28416818	Christophersen IE	2017-04-17	Nat Genet	Large-scale analyses of common and rare variants identify 12 new loci associated with atrial fibrillation.	Atrial fibrillation	15,979 European ancestry cases, 102,776 European ancestry controls.	NA	6q22.31	GJA1	rs12664873-T	0.69	2E-8		1.08	[1.05-1.12]	Affymetrix, Illumina [11795432] (imputed)	N
1519	chr6	122463190	122463191	rs12664873	28416818	Christophersen IE	2017-04-17	Nat Genet	Large-scale analyses of common and rare variants identify 12 new loci associated with atrial fibrillation.	Atrial fibrillation	15,979 European ancestry cases, 102,776 European ancestry controls, 641 African American cases, 5,234 African American controls, 837 Japanese ancestry cases, 3,293 Japanese controls, 277 Hispanic cases, 3,081 Hispanic controls,197 Brazilian ancestry cases, 758 Brazilian ancestry controls.	8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls.	6q22.31	GJA1	rs12664873-T	0.7	1E-8		1.08	[1.05-1.12]	Affymetrix, Illumina [11795432] (imputed)	N
1520	chr6	122675334	122675335	rs34607745	31809533	Han X	2019-09-06	Hum Mol Genet	Genome-wide association analysis of 95 549 individuals identifies novel loci and genes influencing optic disc morphology.	Optic disc size	67,040 British ancestry individuals	28,509 European ancestry individuals	6q22.31	HSF2	rs34607745-T	0.3	3E-16		0.02	unit decrease	Affymetrix [8928767] (imputed)	N
1521	chr6	122700353	122700354	rs182244165	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	6q22.31	NR	rs182244165-C	NR	9E-6	(GEE model)	0.89476	[0.5-1.29] unit decrease	NR [NR] (imputed)	N
1521	chr6	122714223	122714224	rs472070	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6q22.31		rs472070-C	0.651769	6E-11		0.025001155	[0.018-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
1521	chr6	122714811	122714812	rs72974475	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Word reading	3,468 European ancestry individuals	NA	6q22.31	HSF2	rs72974475-T	0.944149	9E-6		0.604288	unit increase	Illumina [6969139] (imputed)	N
1521	chr6	122715243	122715244	rs74392007	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	154,355 East Asian ancestry individuals	NA	6q22.31		rs74392007-T	0.147478	3E-8		0.0268504	[0.017-0.036] unit decrease	Illumina [13479091] (imputed)	N
1521	chr6	122715243	122715244	rs74392007	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6q22.31	NR	rs74392007-T	0.1102	3E-7	(EA)	0.0514	[0.032-0.071] unit increase	Illumina [~ 11800000] (imputed)	N
1521	chr6	122717957	122717958	rs9490446	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	6q22.31	HSF2	rs9490446-T	0.162157	5E-14		0.022242026	[0.016-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1521	chr6	122719512	122719513	rs9372696	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q22.31	NR	rs9372696-T	0.168669	2E-12				Affymetrix, Illumina [24332387] (imputed)	N
1521	chr6	122719512	122719513	rs9372696	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	6q22.31		rs9372696-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1521	chr6	122719630	122719631	rs516805	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	6q22.31	HSF2	rs516805-T	0.7084	2E-16		0.03255498	[0.025-0.04] unit increase	Affymetrix [~ 2500000] (imputed)	N
1521	chr6	122720805	122720806	rs6926219	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6q22.31	HSF2	rs6926219-A	0.546803	2E-34		0.044869516	[0.038-0.052] unit increase	Affymetrix [93095623] (imputed)	N
1521	chr6	122720805	122720806	rs6926219	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q22.31	NR	rs6926219-A	0.547015	1E-48				Affymetrix, Illumina [23472807] (imputed)	N
1521	chr6	122720805	122720806	rs6926219	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	6q22.31	NR	rs6926219-A	0.547273	2E-45		0.026814	[0.023-0.031] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1521	chr6	122721509	122721510	rs1741820	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6q22.31		rs1741820-A	0.455	2E-17				Affymetrix [10369434] (imputed)	N
1521	chr6	122728878	122728879	rs553889	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q22.31	NR	rs553889-G	0.546455	4E-29				Affymetrix, Illumina [24649327] (imputed)	N
1521	chr6	122734971	122734972	rs549302	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	6q22.31	NR	rs549302-A	0.545007	8E-28		0.020151	[0.017-0.024] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
1521	chr6	122743692	122743693	rs2243362	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	6q22.31		rs2243362-?	NR	6E-8				NR [~ 8900000] (imputed)	N
1521	chr6	122746937	122746938	rs576247	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	6q22.31		rs576247-?	NR	8E-25				NR [~ 8900000] (imputed)	N
1521	chr6	122778949	122778949	rs149291347	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	6q22.31	SERINC1	rs149291347-CATAT	0.539081	5E-19		0.020062227	[0.016-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1521	chr6	122778949	122778949	rs149291347	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	6q22.31	SERINC1	rs149291347-CATAT	0.5376	3E-10		0.02307726	[0.016-0.03] unit increase	Affymetrix [~ 2500000] (imputed)	N
1521	chr6	122793598	122793600	rs10535596	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Heat shock 27 kDa protein levels	21,758 European ancestry individuals	9,173 individuals	6q22.31		rs10535596-CAT	0.46	2E-17		0.0809	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1521	chr6	122793700	122793700	rs201435717	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	6q22.31	intergenic	rs201435717-A	NR	8E-7		0.3861	[0.23-0.54] unit increase	Illumina [~ 9000000] (imputed)	N
1521	chr6	122793700	122793700	rs201435717	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	6q22.31	intergenic	rs201435717-A	NR	2E-6	(EA)	0.3744	[0.22-0.53] unit increase	Illumina [~ 9000000] (imputed)	N
1521	chr6	122799540	122799541	rs509596	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	6q22.31		rs509596-A	NR	2E-28		0.0233	[0.019-0.027] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
1521	chr6	122799540	122799541	rs509596	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6q22.31		rs509596-G	0.446	1E-8				Affymetrix [10369434] (imputed)	N
1521	chr6	122799540	122799541	rs509596	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	6q22.31	PKIB	rs509596-G	0.445835	9E-16		0.017894998	[0.014-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1521	chr6	122808092	122808099	rs71553710	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	6q22.31		rs71553710-A	NR	8E-23		0.0196	[0.016-0.024] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
1521	chr6	122808092	122808099	rs71553710	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	6q22.31		rs71553710-A	NR	1E-11		0.0147	[0.01-0.019] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
1521	chr6	122808092	122808099	rs71553710	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	6q22.31		rs71553710-A	NR	2E-14		0.0161	[0.012-0.02] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
1521	chr6	122808096	122808099	rs72176750	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6q22.31	PKIB	rs72176750-A	0.507526	6E-19		0.020105984	[0.016-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1522	chr6	122832171	122832172	rs155465	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q22.31	NR	rs155465-A	0.554178	4E-23				Affymetrix, Illumina [23467995] (imputed)	N
1522	chr6	122855183	122855184	rs197678	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q22.31	NR	rs197678-G	0.553277	1E-12				Affymetrix, Illumina [24588908] (imputed)	N
1522	chr6	122868772	122868773	rs35524515	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q22.31	NR	rs35524515-T	0.153179	4E-11				Affymetrix, Illumina [20825802] (imputed)	N
1522	chr6	122875669	122875670	rs76092474	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6q22.31	NR	rs76092474-T	0.113	3E-6	(EA)	0.046	[0.027-0.065] unit increase	Illumina [~ 11800000] (imputed)	N
1522	chr6	122880296	122880297	rs2021407	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	6q22.31	NR	rs2021407-T	0.161813	2E-12		0.018322	[0.013-0.023] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
1522	chr6	122887554	122887555	rs9375150	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	6q22.31	NR	rs9375150-G	0.446903	2E-13		0.013583	[0.01-0.0172] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1522	chr6	122887554	122887555	rs9375150	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	6q22.31	NR	rs9375150-G	0.446815	2E-22		0.018406	[0.015-0.022] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1522	chr6	122893798	122893798	rs34754113	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	6q22.31		rs34754113-CA	NR	1E-9		0.0165	[0.011-0.022] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
1522	chr6	122893798	122893798	rs34754113	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	6q22.31		rs34754113-CA	NR	4E-8		0.015	[0.0097-0.0203] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
1522	chr6	122893798	122893798	rs34754113	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6q22.31	PKIB	rs34754113-CA	0.264194	5E-13		0.018149119	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1522	chr6	122893798	122893798	rs34754113	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	6q22.31	PKIB	rs34754113-CA	0.264336	1E-13		0.018812379	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1522	chr6	122893798	122893798	rs34754113	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	6q22.31	PKIB	rs34754113-CA	0.264212	2E-16		0.0187811	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1522	chr6	122893798	122893798	rs34754113	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	6q22.31	PKIB	rs34754113-CA	0.264226	1E-11		0.01655097	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1523	chr6	122956072	122956073	rs149967400	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	6q22.31	NR	rs149967400-?	NR	4E-6		1.8013	[0.83-2.77] unit decrease	Illumina [at least 560000] (imputed)	N
1523	chr6	122991422	122991423	rs56378326	31260374	Pedergnana V	2019-07-01	J Interferon Cytokine Res	Impact of IFNL4 Genetic Variants on Sustained Virologic Response and Viremia in Hepatitis C Virus Genotype 3 Patients.	Response to direct-acting antiviral treatment in hepatitis C virus genotype 3	325 European, Asian and unknown ancestry responders, 84 European, Asian and unknown ancestry non-responders	NA	6q22.31	NR	rs56378326-?	NR	7E-7		Infinity	NR	Affymetrix [~ 18000000] (imputed)	N
1523	chr6	123071111	123071112	rs6913003	30845926	van der Plaat DA	2019-03-07	BMC Pulm Med	Limited overlap in significant hits between genome-wide association studies on two airflow obstruction definitions in the same population.	Airway obstruction (FEV1/FVC<lower limit of normal) in never smokers	401 European ancestry cases, 4,669 European ancestry controls	92 European ancestry cases, 1,874 European ancestry controls	6q22.31	FABP7	rs6913003-T	0.04	4E-6		1.81	[1.56-2.06]	Illumina [227981]	N
1523	chr6	123071111	123071112	rs6913003	30845926	van der Plaat DA	2019-03-07	BMC Pulm Med	Limited overlap in significant hits between genome-wide association studies on two airflow obstruction definitions in the same population.	Airway obstruction (FEV1/FVC<70%) in never smokers	548 European ancestry cases, 4,522 European ancestry controls	230 European ancestry cases, 1,736 European ancestry controls	6q22.31	FABP7	rs6913003-T	0.04	3E-7		1.78	[1.66-1.90]	Illumina [227981]	N
1523	chr6	123076112	123076113	rs9398699	28282560	Pott J	2017-02-24	Atherosclerosis	Genome-wide meta-analysis identifies novel loci of plaque burden in carotid artery.	Carotid plaque burden	7,189 European ancestry individuals	NA	6q22.31	FABP7	rs9398699-A	NR	2E-6		0.4246623	[0.25-0.6] unit decrease	Affymetrix [9576485] (imputed)	N
1524	chr6	123078318	123078319	rs75937823	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6q22.31	NR	rs75937823-A	0.02613	2E-8	(C4B)	0.3815	NR unit increase	Illumina [1671387] (imputed)	N
1524	chr6	123095066	123095067	rs9375182	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6q22.31	Intergenic	rs9375182-?		3E-6		1.0309278	[1.02-1.05]	Illumina [7645193] (imputed)	N
1524	chr6	123095066	123095067	rs9375182	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6q22.31	Intergenic	rs9375182-?		3E-6		1.3513513	[1.19-1.54]	Illumina [7645193] (imputed)	N
1524	chr6	123096984	123096988	rs139337062	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Cervical cancer	605 Japanese ancestry cases, 89,731 Japanese ancestry controls	NA	6q22.31		rs139337062-A	0.488027204	3E-8		0.7036727	[0.621442066-0.796784242]	Illumina [8919992] (imputed)	N
1524	chr6	123118499	123118500	rs9375185	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SMPDL3A	5,366 Icelandic ancestry individuals	NA	6q22.31		rs9375185-C	0.176	4E-12		0.169488	[0.12-0.22] unit decrease	Illumina [7506463] (imputed)	N
1524	chr6	123118499	123118500	rs9375185	28031287	Sasayama D	2016-11-26	Hum Mol Genet	Genome-wide quantitative trait loci mapping of the human cerebrospinal fluid proteome.	Cerebrospinal fluid biomarker levels	133 Japanese ancestry individuals.	NA	6q22.31	NR	rs9375185-?	NR	2E-17	(Acid sphingomyelinase-like phosphodiesterase 3a)			Illumina [514227]	N
1524	chr6	123122463	123122464	rs28385609	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SMPDL3A	5,366 Icelandic ancestry individuals	NA	6q22.31		rs28385609-T	0.1694	2E-283		0.809533	[0.77-0.85] unit decrease	Illumina [7506463] (imputed)	N
1524	chr6	123122463	123122464	rs28385609	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6q22.31	SMPDL3A	rs28385609-T	0.145	2E-282	(Acid sphingomyelinase-like phosphodiesterase 3a, SMPDL3A.14086.11.3)	1.08	[1.02-1.14] unit decrease	Affymetrix [10572788] (imputed)	N
1524	chr6	123122463	123122464	rs28385609	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6q22.31	SMPDL3A	rs28385609-T	0.1435045	2E-17	(EA, Acid sphingomyelinase-like phosphodiesterase 3a)	0.5315	[0.41-0.65] unit decrease	Affymetrix [509946]	N
1524	chr6	123125129	123125129	rs112270814	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6q22.31	NR	rs112270814-CT	0.352	4E-61	(Acid sphingomyelinase-like phosphodiesterase 3a, SMPDL3A.14086.11.3)	0.46	[0.4-0.52] unit increase	Affymetrix [10572788] (imputed)	N
1524	chr6	123125410	123125411	rs9385271	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6q22.31	NR	rs9385271-C	0.324	5E-194	(Acid sphingomyelinase-like phosphodiesterase 3a, SMPDL3A.14086.11.3)	0.72	[0.68-0.76] unit decrease	Affymetrix [10572788] (imputed)	N
1524	chr6	123127596	123127597	rs13192569	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6q22.31	SMPDL3A	rs13192569-G	0.825	9E-161	(SMPDL3A, 14086_11_3)	0.81699836	[0.76-0.87] unit increase	Illumina [> 1000000] (imputed)	N
1524	chr6	123128855	123128855	rs5784724	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	6q22.31	SMPDL3A, FABP7	rs5784724-?		3E-7	(heterogeneous)	0.208	[0.13-0.29] unit increase	Illumina [1492601] (imputed)	N
1524	chr6	123139459	123139460	rs35141697	32180562	Kulyte A	2020-01-25	Mol Metab	Genome-wide association study of adipocyte lipolysis in the GENetics of adipocyte lipolysis (GENiAL) cohort.	Stimulated adipocyte lipolysis	874 European ancestry individuals	NA	6q22.31	NR	rs35141697-?	0.750527	5E-6		0.07	[0.041-0.099] unit increase	NR [9260588] (imputed)	N
1525	chr6	123287416	123287417	rs111851914	33824429	Fjukstad KK	2021-04-06	Pharmacogenomics J	Genetic variants associated with cardiometabolic abnormalities during treatment with selective serotonin reuptake inhibitors: a genome-wide association study.	Triglyceride levels x SSRI levels (escitalopram or citalopram) interaction in schizophrenia or bipolar disorder	181 European ancestry individuals	NA	6q22.31	CLVS2	rs111851914-A	NR	3E-7		12.05	[7.48-16.62] unit increase	Illumina [NR] (imputed)	N
1525	chr6	123291040	123291041	rs10872257	31220337	Carr DF	2019-06-20	Clin Pharmacol Ther	Genome-wide association study of statin-induced myopathy in patients recruited using the UK clinical practice research datalink.	Simvastatin-induced myopathy	85 European ancestry cases, 2,501 controls	NA	6q22.31	intergenic	rs10872257-?	NR	1E-6		2.173913	[1.56-3.03]	Illumina [654642] (imputed)	N
1526	chr6	123348146	123348147	rs9372732	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	6q22.31	CLVS2	rs9372732-?		4E-11				Affymetrix, Illumina [NR] (imputed)	N
1526	chr6	123400104	123400105	rs9385284	28498854	Liang J	2017-05-12	PLoS Genet	Single-trait and multi-trait genome-wide association analyses identify novel loci for blood pressure in African-ancestry populations.	Blood pressure traits (multi-trait analysis)	Up to 31,155 African individuals	Up to 4,187 African individuals, up to 14,016 Korean ancestry individuals, up to 23,914 European ancestry individuals, up to 12,278 Hispanic individuals	6q22.31	NR	rs9385284-G	NR	1E-6	(Het)			Affymetrix, Illumina [at least 30072738] (imputed)	N
1528	chr6	123610181	123610182	rs2195728	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	6q22.31	TRDN	rs2195728-A	0.128	5E-6		0.072	NR unit increase	Illumina [NR] (imputed)	N
1528	chr6	123623064	123623065	rs12214992	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6q22.31	RLBP1L2	rs12214992-?	NR	2E-6	(phosphocreatine)	0.20993039	[0.12-0.3] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1528	chr6	123692745	123692746	rs4897203	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	6q22.31	NR	rs4897203-T	NR	1E-6	(LME model)	0.75243	[0.45-1.05] unit increase	NR [NR] (imputed)	N
1528	chr6	123711839	123711840	rs17737857	30591961	Huang L	2018-12-24	Sci China Life Sci	Genome-wide analysis identified 17 new loci influencing intraocular pressure in Chinese population.	Intraocular pressure	5,571 Chinese ancestry individuals	2,981 Chinese ancestry individuals	6q22.31	TRDN	rs17737857-C	0.36	1E-11		6.8	NR z score increase	Illumina [at least 900015] (imputed)	N
1529	chr6	123741002	123741003	rs116878295	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cerebral amyloid deposition in APOEe4 non-carriers (PET imaging)	370 European and other ancestry APOEe4 non-carriers	NA	6q22.31	TRDN	rs116878295-A	0.0037	6E-7		0.5081	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
1529	chr6	123755663	123755664	rs12209641	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	TRDN	rs12209641-A	0.925461	4E-10	(-24 ms)	0.0658065	[0.045-0.087] unit decrease	Affymetrix [10000000] (imputed)	N
1529	chr6	123755663	123755664	rs12209641	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	TRDN	rs12209641-A	0.925461	2E-9	(-26 ms)	0.0627972	[0.042-0.084] unit decrease	Affymetrix [10000000] (imputed)	N
1529	chr6	123788960	123788961	rs4613836	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6q22.31	NR	rs4613836-?	NR	8E-9				Affymetrix [~ 8270000] (imputed)	N
1529	chr6	123788960	123788961	rs4613836	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	6q22.31		rs4613836-?	NR	8E-9				NR [~ 8900000] (imputed)	N
1529	chr6	123818067	123818068	rs139389287	31490055	Sun J	2019-09-06	Can J Surg	A genome-wide association study of cocaine use disorder accounting for phenotypic heterogeneity and gene-environment interaction	Cocaine use disorder x household tobacco use interaction	2,070 African American individuals, 1,570 European ancestry individuals	918 African American individuals, 1,382 European ancestry individuals	6q22.31	RP13-20L14.1	rs139389287-?	NR	2E-6	(subtype 5, AA)	4.743	[NR] z score decrease	Illumina [up to 47104916] (imputed)	N
1529	chr6	123818870	123818871	rs9320939	33495597	Harper AR	2021-01-25	Nat Genet	Common genetic variants and modifiable risk factors underpin hypertrophic cardiomyopathy susceptibility and expressivity.	Hypertrophic cardiomyopathy (sarcomere negative)	170 African ancestry cases, 93 Hispanic/Latino cases, 52 East Asian ancestry cases, 1,444 European ancestry cases, 94 South Asian ancestry cases, 21 cases, 738 African ancestry controls, 78 Hispanic/Latino controls, 212 East Asian ancestry controls, 24,161 European ancestry controls, 1,132 South Asian ancestry controls, 1,023 controls	NA	6q22.31	TRDN	rs9320939-G	0.516614	2E-6		0.18585	[0.11-0.26] unit decrease	Affymetrix [8590397] (imputed)	N
1529	chr6	123861318	123861319	rs11154178	28672053	Meng W	2017-07-03	Br J Dermatol	A genome-wide association study suggests that MAPK14 is associated with diabetic foot ulcers.	Foot ulcer and neuropathy in diabetes	662 European ancestry type 2 diabetes and neuropathy cases, 37 European ancestry type 1 diabetes and neuropathy cases, 4,250 European ancestry type 1 and type 2 diabetes controls	NA	6q22.31	NR	rs11154178-?	NR	2E-7		1.37	[1.22-1.55]	Affymetrix, Illumina [6706850] (imputed)	N
1530	chr6	123879921	123879922	rs2145737	28632202	Witt SH	2017-06-20	Transl Psychiatry	Genome-wide association study of borderline personality disorder reveals genetic overlap with bipolar disorder, major depression and schizophrenia.	Borderline personality disorder	998 European ancestry cases, 1,545 European ancestry controls	NA	6q22.31	TRDN	rs2145737-T	0.5422	7E-6		1.3526	[1.22-1.48]	Illumina [10736316] (imputed)	N
1530	chr6	123886230	123886231	rs4897302	30697902	Hernandez-Pacheco N	2019-01-29	Clin Exp Allergy	Genome-wide association study of inhaled corticosteroid response in admixed children with asthma.	Asthma exacerbations in inhaled corticosteroid treatment	854 Hispanic/Latino cases, 493 African American cases	1,697 European ancestry cases	6q22.31	TRDN	rs4897302-T	0.505	2E-6	(Hispanic/Latino+AfricanAmerican)	1.58	[1.31-1.91]	Affymetrix [~ 8700000] (imputed)	N
1530	chr6	123892000	123892001	rs2145735	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Endometriosis	645 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6q22.31	Intergenic	rs2145735-?		9E-6		1.369863	[1.19-1.56]	Illumina [7645193] (imputed)	N
1530	chr6	123989740	123989741	rs9490860	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6q22.31	NR	rs9490860-C	0.231696267498885	4E-6	(IGP61)	0.17	[0.098-0.242] unit decrease	Illumina [~ 2500000] (imputed)	N
1530	chr6	123992029	123992030	rs4524627	30134803	Matana A	2018-04-11	Mol Med	Genome-wide meta-analysis identifies novel loci associated with parathyroid hormone level.	Plasma parathyroid hormone levels	806 Korculan (founder/genetic isolate) individuals, 831 Vis (founder/genetic isolate) individuals, 959 Croatian ancestry individuals	NA	6q22.31	NR	rs4524627-?	NR	3E-6	(male)	0.32	[0.18-0.46] unit decrease	Illumina [7411206] (imputed)	N
1531	chr6	124036945	124036946	rs150365886	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cerebral amyloid deposition in APOEe4 non-carriers (PET imaging)	370 European and other ancestry APOEe4 non-carriers	NA	6q22.31	TRDN, NKAIN2	rs150365886-G	0.0023	8E-7		0.4279	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
1532	chr6	124137744	124137745	rs6569363	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6q22.31	NR	rs6569363-?	NR	3E-6		4.671	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1532	chr6	124142978	124142979	rs928529	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Streptococcus)	1,068 Japanese ancestry individuals	NA	6q22.31	NKAIN2	rs928529-A	0.49	9E-6		0.279	[0.16-0.4] unit increase	Illumina [6380737] (imputed)	N
1532	chr6	124158251	124158252	rs6569364	34224794	Wang K	2021-07-02	Prog Neuropsychopharmacol Biol Psychiatry	Genome-wide association study identified INSC gene associated with Trail Making Test Part A and Alzheimer's disease related cognitive phenotypes.	Cognitive impairment level	684 European ancestry individuals, 17 Hispanic individuals, 36 African American individuals, 18 individuals	NA	6q22.31		rs6569364-A	0.22	4E-6		2.448	[1.42-3.48] unit decrease	NR [534934]	N
1532	chr6	124184844	124184845	rs73770293	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6q22.31	NR	rs73770293-C	0.03659	3E-10	(C9orf64)	0.004289	NR unit decrease	Illumina [1671387] (imputed)	N
1532	chr6	124184844	124184845	rs73770293	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6q22.31	NR	rs73770293-C	0.03659	2E-8	(GPX4)	0.009657	NR unit decrease	Illumina [1671387] (imputed)	N
1532	chr6	124198915	124198916	rs55902602	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	6q22.31	NKAIN2, TRDN	rs55902602-T	NR	4E-6	(sleep onset irregularity)	0.06737	[0.039-0.096] unit increase	Affymetrix [7141204] (imputed)	N
1532	chr6	124236283	124236284	rs12530266	26528553	Davenport ER	2015-11-03	PLoS One	Genome-Wide Association Studies of the Human Gut Microbiota.	Gut microbiome composition (summer)	91 Hutterite individuals	NA	6q22.31	NR	rs12530266-?	NR	6E-6	(family_Enterobacteriaceae)	0.7078847	[0.42-1] unit increase	Affymetrix [210924]	N
1533	chr6	124292593	124292594	rs728017	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	6q22.31	NR	rs728017-G	0.6136	1E-8		1.0351967	[1.02-1.05]	Affymetrix, Illumina [NR] (imputed)	N
1533	chr6	124312657	124312658	rs4895382	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or recurrent major depressive disorder x sex interaction (3df)	31,567 European ancestry schizophrenia cases,19,924 European ancestry bipolar disorder cases, 5,314 European ancestry recurrent major depressive disorder cases, 78,190 European ancestry controls, 1,836 East Asian ancestry schizophrenia cases, 3,383 East Asian ancestry controls	NA	6q22.31	NR	rs4895382-G	NR	4E-6				NR [NR] (imputed)	N
1533	chr6	124312657	124312658	rs4895382	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or recurrent major depressive disorder x sex interaction (3df)	31,567 European ancestry schizophrenia cases,19,924 European ancestry bipolar disorder cases, 5,314 European ancestry recurrent major depressive disorder cases, 78,190 European ancestry controls	NA	6q22.31	NR	rs4895382-G	NR	4E-6				NR [NR] (imputed)	N
1533	chr6	124319709	124319710	rs4574657	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	6q22.31	Intergenic	rs4574657-?	NR	8E-6		1.855	[NR]	Affymetrix [492217] (imputed)	N
1533	chr6	124326226	124326227	rs117780815	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or recurrent major depressive disorder x sex interaction (3df)	31,567 European ancestry schizophrenia cases,19,924 European ancestry bipolar disorder cases, 5,314 European ancestry recurrent major depressive disorder cases, 78,190 European ancestry controls, 1,836 East Asian ancestry schizophrenia cases, 3,383 East Asian ancestry controls	NA	6q22.31	NR	rs117780815-T	NR	3E-8				NR [NR] (imputed)	N
1533	chr6	124326226	124326227	rs117780815	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or recurrent major depressive disorder x sex interaction (3df)	31,567 European ancestry schizophrenia cases,19,924 European ancestry bipolar disorder cases, 5,314 European ancestry recurrent major depressive disorder cases, 78,190 European ancestry controls	NA	6q22.31	NR	rs117780815-T	NR	3E-8				NR [NR] (imputed)	N
1533	chr6	124326226	124326227	rs117780815	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or major depressive disorder x sex interaction (3df)	31,567 European ancestry schizophrenia cases,19,924 European ancestry  bipolar disorder cases, 15,970 European ancestry major depressive disorder cases, 93,025 European ancestry controls, 1,836 East Asian ancestry schizophrenia cases, 3,383 East Asian ancestry controls	NA	6q22.31	NR	rs117780815-T	NR	3E-8				NR [NR] (imputed)	N
1533	chr6	124326226	124326227	rs117780815	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or major depressive disorder x sex interaction (3df)	31,567 European ancestry schizophrenia cases,19,924 European ancestry  bipolar disorder cases, 15,970 European ancestry major depressive disorder cases, 93,025 European ancestry controls	NA	6q22.31	NKAIN2	rs117780815-T	NR	3E-8			[NR]	NR [NR] (imputed)	N
1533	chr6	124326226	124326227	rs117780815	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Bipolar disorder x sex interaction	19,924 European ancestry cases, 30,547 European ancestry controls	NA	6q22.31	NKAIN2	rs117780815-A	0.964	1E-6		0.5043	[0.3-0.71] unit increase	NR [NR] (imputed)	N
1533	chr6	124326226	124326227	rs117780815	23535033	Sherva R	2013-03-24	Alzheimers Dement	Genome-wide association study of the rate of cognitive decline in Alzheimer's disease.	Alzheimer's disease (cognitive decline)	303 European ancestry cases		6q22.31	NKAIN2	rs117780815-?	0.03	6E-7		0.31	unit decrease	Illumina [NR] (imputed)	N
1533	chr6	124342662	124342663	rs6917824	23894747	Aberg KA	2013-02-01	JAMA Psychiatry	A comprehensive family-based replication study of schizophrenia genes.	Schizophrenia	11,185 European ancestry cases, 10,768 European ancestry controls	1,262 African American ancestry individuals, 2,740 European ancestry individuals, 2,296 Asian ancestry individuals	6q22.31	NKAIN2	rs6917824-G	0.83	4E-6	(EA)	1.3	[NR]	NR [1085772] (imputed)	N
1534	chr6	124398001	124398002	rs17086577	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6q22.31	TRDN	rs17086577-?	NR	2E-7	(oxalate)	0.45490912	[0.28-0.63] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1534	chr6	124405154	124405155	rs13204086	24024966	Teumer A	2013-08-14	J Clin Periodontol	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (Mean PAL)	up to 4,032 European ancestry individuals	NA	6q22.31	NKAIN2	rs13204086-T	0.04	2E-6	(Age 20-81 years)	0.1616	[0.095-0.228] unit increase	Affymetrix, Illumina [up to 17585496] (imputed)	N
1534	chr6	124466387	124466388	rs189203629	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA	6q22.31	NR	rs189203629-?	NR	7E-6		0.1936	[0.11-0.28] unit increase	Illumina [at least 560000] (imputed)	N
1535	chr6	124537013	124537014	rs192590503	29478698	Cheng Z	2018-01-11	Biol Psychiatry	Genome-wide Association Study Identifies a Regulatory Variant of RGMA Associated With Opioid Dependence in European Americans.	Opioid dependence	3,058 European ancestry individuals	2,014 African American individuals	6q22.31	NR	rs192590503-?	NR	3E-7	(EA)	1.4	unit decrease	Illumina [at least 4700000] (imputed)	N
1535	chr6	124559731	124559732	rs77490164	24024966	Teumer A	2013-08-14	J Clin Periodontol	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (Mean PAL)	up to 4,032 European ancestry individuals	NA	6q22.31	NKAIN2	rs77490164-T	0.05	8E-7	(Age 20-60 years)	0.1282	[0.077-0.179] unit increase	Affymetrix, Illumina [up to 17585496] (imputed)	N
1536	chr6	124651199	124651200	rs2626129	31711042	Li X	2019-11-11	Aging (Albany NY)	Genome-wide association study identifies SIAH3 locus influencing the rate of ventricular enlargement in non-demented elders.	Rate of ventricular enlargement	507 European ancestry individuals	NA	6q22.31	NKAIN2	rs2626129-C	0.32	4E-6		0.015	NR unit decrease	Illumina [1231747]	N
1536	chr6	124670643	124670644	rs146008097	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Rubella	12,000 European ancestry cases, 71,597 European ancestry controls	NA	6q22.31	NR	rs146008097-?	NR	6E-7		0.6434	[0.4-0.89] unit decrease	Illumina [at least 560000] (imputed)	N
1536	chr6	124691236	124691237	rs9491140	20634892	Calboli FC	2010-07-09	PLoS One	A genome-wide association study of neuroticism in a population-based sample.	Neuroticism	2,235 European ancestry individuals	NA	6q22.31	NKAIN2	rs9491140-?	0.33	3E-7		0.91	[0.56-1.26] unit decrease	Affymetrix [1705237] (imputed)	N
1536	chr6	124743506	124743507	rs531930	24999842	Garner C	2014-07-07	PLoS One	Genome-wide association study of celiac disease in North America confirms FRMD4B as new celiac locus.	Celiac disease	1,550 European ancestry cases, 3,084 European ancestry controls	NA	6q22.31	NKAIN2	rs531930-?	NR	5E-7		1.3	[1.17-1.44]	Illumina [517345]	N
1536	chr6	124764630	124764631	rs9401746	27397699	Pei YF	2016-07-07	Bone	Genome-wide association meta-analyses identified 1q43 and 2q32.2 for hip Ward's triangle areal bone mineral density.	Bone mineral density (Ward's triangle area)	4,305 European ancestry individuals,1,579 Chinese Han ancestry individuals, 845 African-American individuals, 446 Hispanic individuals		6q22.31	NKAIN2	rs9401746-G	NR	1E-6		0.12	[NR] unit decrease	Affymetrix, Illumina [at least 9551331] (imputed)	N
1537	chr6	124794201	124794202	rs117871957	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q22.31	NR	rs117871957-T	0.999632	4E-13				Affymetrix, Illumina [24653286] (imputed)	N
1537	chr6	124807813	124807814	rs587706	26112879	Rudkowska I	2015-06-20	J Nutrigenet Nutrigenomics	Interaction between Common Genetic Variants and Total Fat Intake on Low-Density Lipoprotein Peak Particle Diameter: A Genome-Wide Association Study.	LDL peak particle diameter (total fat intake interaction)	541 European ancestry individuals	NA	6q22.31	NKAIN2	rs587706-G	0.32	5E-6		0.03	[0.01-0.05] unit increase	Illumina [1632371] (imputed)	N
1537	chr6	124824801	124824802	rs626967	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Third ventricle volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	6q22.31	NKAIN2	rs626967-?		6E-6				Illumina [4322238] (imputed)	N
1537	chr6	124897695	124897696	rs497756	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	6q22.31		rs497756-T	NR	3E-8		0.0117	[0.0076-0.0158] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1537	chr6	124906986	124906987	rs76995465	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	6q22.31	NKAIN2	rs76995465-?		5E-7	(additive)	0.281	[0.17-0.39] unit decrease	Illumina [1492601] (imputed)	N
1537	chr6	124906986	124906987	rs76995465	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	6q22.31	NKAIN2	rs76995465-?		2E-6	(dominant)	0.275	[NR] unit decrease	Illumina [1492601] (imputed)	N
1537	chr6	124911533	124911534	rs1871329	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	6q22.31	NA	rs1871329-A	0.7632	1E-10		0.0131	[0.0092-0.017] unit decrease	NR [~ 27400000] (imputed)	N
1538	chr6	124925031	124925032	rs2875762	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		6q22.31	NKAIN2	rs2875762-G	0.757091	6E-12		0.0110373	[0.0079-0.0142] unit decrease	Affymetrix [12370749]	N
1538	chr6	124925031	124925032	rs2875762	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6q22.31	NR	rs2875762-?	NR	4E-11				Affymetrix [~ 8270000] (imputed)	N
1538	chr6	124925031	124925032	rs2875762	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	6q22.31		rs2875762-?	NR	6E-11				NR [~ 8900000] (imputed)	N
1538	chr6	124943310	124943311	rs73573379	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels	18,590 European ancestry individuals	NA	6q22.31		rs73573379-?	NR	4E-6		0.07	[0.039-0.101] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1538	chr6	124951062	124951063	rs504008	23534349	Jeff JM	2013-03-28	Ann Hum Genet	Generalization of variants identified by genome-wide association studies for electrocardiographic traits in African Americans.	QRS duration	455 African American individuals	NA	6q22.31	NKAIN2	rs504008-C		3E-6		2.7	[NR] ms increase	Illumina [> 930000]	N
1538	chr6	124962629	124962630	rs574961294	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid pneumonia vs population)	1,004 European ancestry cases, 680,354 European ancestry controls, 218 Hispanic or Latin American cases, 94,318 Hispanic or Latin American controls, 64 Black or African American cases, 22,412 Black or African American controls	NA	6q22.31		rs574961294-?	NR	4E-6		0.8728554	[0.51-1.24] unit increase	Illumina [9901720] (imputed)	N
1538	chr6	125004849	125004850	rs12191379	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6q22.31	NR	rs12191379-?	NR	5E-6		4.547	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1538	chr6	125025299	125025300	rs17766756	31194736	Tiensuu H	2019-06-13	PLoS Genet	Risk of spontaneous preterm birth and fetal growth associates with fetal SLIT2.	Spontaneous preterm birth with premature rupture of membranes	133 Finnish ancestry infant cases, 419 Finnish ancestry infant controls	NA	6q22.31	NKAIN2	rs17766756-?	NR	3E-6		3.78		Illumina [6778521] (imputed)	N
1538	chr6	125042504	125042505	rs71561806	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	6q22.31		rs71561806-G	0.727	3E-9		0.008	[0.006-0.01] unit increase	NR [NR] (imputed)	N
1539	chr6	125050992	125050993	rs28858382	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	6q22.31	NKAIN2	rs28858382-C	0.473907	5E-10		0.0128518	[0.0088-0.0169] unit increase	NR [16516521] (imputed)	N
1539	chr6	125053616	125053617	rs2065974	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia	11,197 European ancestry low myopic cases, 21,416 European ancestry emmetropia controls	NA	6q22.31	NR	rs2065974-?	NR	8E-7		0.211872	[0.13-0.3] unit increase	NR [13958389] (imputed)	N
1539	chr6	125072021	125072022	rs9398764	24569950	Hatemi PK	2014-02-26	Behav Genet	Genetic influences on political ideologies: twin analyses of 19 measures of political ideologies from five democracies and genome-wide findings from three populations.	Political ideology	11,388 European ancestry individuals from 6,758 families	NA	6q22.31	NR	rs9398764-?		9E-7		0.0958	[0.058-0.134] unit increase	Illumina [> 269840] (imputed)	N
1539	chr6	125107498	125107499	rs6932127	33987465	Alfradique-Dunham I	2021-01-28	Neurol Genet	Genome-Wide Association Study Meta-Analysis for Parkinson Disease Motor Subtypes.	Parkinson's disease motor subtype (tremor dominant vs postural instability/gait difficulty)	1,570 European ancestry tremor dominant cases, 1,259 European ancestry postural instability/gait difficulty cases	NA	6q22.31	NKAIN2	rs6932127-T	0.89	3E-6		0.46	[0.26-0.66] unit decrease	Illumina [12910578] (imputed)	N
1539	chr6	125144351	125144352	rs2025251	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Uterine fibroids	5,236 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6q22.31	Intergenic	rs2025251-?		9E-6		1.0869565	[1.05-1.12]	Illumina [7645193] (imputed)	N
1539	chr6	125144351	125144352	rs2025251	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Rapid automised naming of letters	2,563 European ancestry individuals	NA	6q22.31	NKAIN2	rs2025251-T	0.427222857	3E-6		0.15521	[0.091-0.22] unit decrease	Illumina [6952813] (imputed)	N
1539	chr6	125156448	125156449	rs11154271	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Subcutaneous adipose tissue	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	6q22.31	TCBA1	rs11154271-C	0.22	1E-6	(overall)			Affymetrix, Illumina [2500000] (imputed)	N
1540	chr6	125201578	125201579	rs12197808	34563919	Chiba Y	2021-09-20	J Neurol Sci	Genetic and demographic predisposing factors associated with pediatric sleepwalking in the Philadelphia Neurodevelopmental Cohort.	Sleepwalking	155 African American cases, 2,598 African American controls, 512 European ancestry cases, 4,250 European ancestry controls	NA	6q22.31		rs12197808-A	NR	2E-6		1.6472		Illumina [NR] (imputed)	N
1540	chr6	125251373	125251374	rs6916777	33589590	Marshe VS	2021-02-15	Transl Psychiatry	Genome-wide analysis suggests the importance of vascular processes and neuroinflammation in late-life antidepressant response.	Response to antidepressants (symptom improvement)	307 European ancestry individuals	NA	6q22.31	RP11-510H23.1	rs6916777-A	NR	1E-6		14.03	[8.47-19.59] unit increase	Illumina [4471676] (imputed)	N
1540	chr6	125251373	125251374	rs6916777	33589590	Marshe VS	2021-02-15	Transl Psychiatry	Genome-wide analysis suggests the importance of vascular processes and neuroinflammation in late-life antidepressant response.	Remission after antidepressant treatment in major depression	161 European ancestry remitters, 146 European ancestry non-remitters	NA	6q22.31	RP11-510H23.1	rs6916777-A	NR	4E-6		2.58	[1.73-3.85]	Illumina [4471676] (imputed)	N
1540	chr6	125252363	125252364	rs6902719	31659325	Malhotra R	2019-10-28	Nat Genet	HDAC9 is implicated in atherosclerotic aortic calcification and affects vascular smooth muscle cell phenotype.	Thoracic aortic calcification levels	8,422 European ancestry individuals	NA	6q22.31	RNF217-AS1	rs6902719-A	0.019	1E-6		4.9	z score decrease	Affymetrix, Illumina [9000000] (imputed)	N
1540	chr6	125261409	125261410	rs4896598	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	6q22.31	NR	rs4896598-G	0.269242	1E-9		0.0208622	[0.014-0.028] unit increase	NR [19129689] (imputed)	N
1541	chr6	125312649	125312650	rs1334425	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	6q22.31	NR	rs1334425-C	NR	2E-15		0.0222	[0.017-0.028] unit decrease	Affymetrix [9000000] (imputed)	N
1541	chr6	125324864	125324865	rs9401792	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	6q22.31		rs9401792-G	NR	5E-20		0.0216	[0.017-0.026] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
1541	chr6	125333796	125333797	rs9388399	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	6q22.31	NR	rs9388399-C	0.3113	4E-18		0.002087	[0.0016-0.0026] unit decrease	Affymetrix [NR] (imputed)	N
1541	chr6	125403008	125403009	rs476080	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	6q22.31	RNF217	rs476080-T	NR	8E-6		1.22152	[0.68-1.76] unit increase	Illumina [at least 950000] (imputed)	N
1541	chr6	125403393	125403394	rs1322634	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-like 1 protein levels	252 European ancestry individuals	NA	6q22.31		rs1322634-C	NR	3E-6		0.11703	[0.069-0.165] unit increase	Illumina [NR] (imputed)	N
1542	chr6	125447058	125447059	rs117776208	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		TPD52L1	rs117776208-?	NR	2E-8	(female)	0.35702	[NR] unit increase	Affymetrix [NR] (imputed)	N
1543	chr6	125620443	125620444	rs987166	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q22.31	NR	rs987166-G	0.187051	2E-21				Affymetrix, Illumina [24332387] (imputed)	N
1543	chr6	125621644	125621645	rs2243389	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q22.31	NR	rs2243389-T	0.185736	8E-17				Affymetrix, Illumina [24653286] (imputed)	N
1543	chr6	125622736	125622737	rs112982980	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	6q22.31	HDDC2	rs112982980-G	0.181247	1E-19		0.025684677	[0.02-0.031] unit increase	Affymetrix [93095623] (imputed)	N
1543	chr6	125622736	125622737	rs112982980	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	6q22.31	HDDC2	rs112982980-G	0.181257	3E-17		0.02406944	[0.018-0.03] unit increase	Affymetrix [93095623] (imputed)	N
1543	chr6	125622736	125622737	rs112982980	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	6q22.31	HDDC2	rs112982980-G	0.181247	2E-17		0.024364414	[0.019-0.03] unit increase	Affymetrix [93095623] (imputed)	N
1543	chr6	125622736	125622737	rs112982980	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	6q22.31		rs112982980-?	NR	4E-20				NR [~ 8900000] (imputed)	N
1543	chr6	125623184	125623185	rs73581683	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	6q22.31		rs73581683-T	NR	4E-10		0.0154	[0.011-0.02] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
1543	chr6	125623246	125623247	rs73581685	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	6q22.31	NR	rs73581685-T	0.179519	6E-24		0.024283	[0.02-0.029] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
1543	chr6	125623246	125623247	rs73581685	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q22.31	NR	rs73581685-T	0.180855	2E-16				Affymetrix, Illumina [24558453] (imputed)	N
1543	chr6	125623289	125623289	rs145065587	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	6q22.31		rs145065587-CTCCTCT	NR	2E-10		0.0181	[0.013-0.024] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
1543	chr6	125636691	125636692	rs6940945	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	HDDC2	rs6940945-A	0.54345	4E-8	(138 ms)	0.0288266	[0.018-0.04] unit decrease	Affymetrix [10000000] (imputed)	N
1543	chr6	125664539	125664540	rs6913204	35210625	Barc J	2022-02-24	Nat Genet	Genome-wide association analyses identify new Brugada syndrome risk loci and highlight a new mechanism of sodium channel regulation in disease susceptibility.	Brugada syndrome	2,820 European ancestry cases, 10,001 European ancestry controls	NA	6q22.31	HDDC2	rs6913204-C	0.47	1E-8		1.22	[1.134 - 1.29]	Affymetrix, Illumina [6990521] (imputed)	N
1543	chr6	125673962	125673963	rs9482647	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Geobacteraceae abundance in stool	5,959 Finnish ancestry individuals	NA	6q22.31		rs9482647-A	0.0976903	4E-8		0.0348178	[0.022-0.047] unit decrease	Illumina [7980478] (imputed)	N
1544	chr6	125780021	125780022	rs71563664	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	6q22.31	NR	rs71563664-C	0.26741	2E-9		0.0206841	[0.014-0.027] unit increase	NR [19129689] (imputed)	N
1544	chr6	125789646	125789647	rs34172167	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	6q22.31	HDDC2, TPD52L1	rs34172167-T	NR	9E-6	(sleep onset)	0.2146	[0.12-0.31] unit decrease	Affymetrix [7141204] (imputed)	N
1545	chr6	125846603	125846604	rs11755413	28235828	Traglia M	2017-04-03	G3 (Bethesda)	Independent Maternal and Fetal Genetic Effects on Midgestational Circulating Levels of Environmental Pollutants.	Midgestational circulating levels of PCBs (fetal genetic effect)	764 fetuses	NA	6q22.31	HEY2, HDDC2	rs11755413-?		3E-7	(PCB118)	0.28	[0.18-0.38] unit increase	Affymetrix [622716]	N
1545	chr6	125848897	125848898	rs72967735	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6q22.31	NR	rs72967735-?	NR	3E-14				Affymetrix [~ 8270000] (imputed)	N
1545	chr6	125866627	125866628	rs149417607	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Rubella	12,000 European ancestry cases, 71,597 European ancestry controls	NA	6q22.31	NR	rs149417607-?	NR	2E-6		0.3591	[0.21-0.51] unit decrease	Illumina [at least 560000] (imputed)	N
1545	chr6	125930039	125930040	rs141682172	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	6q22.31		rs141682172-?	NR	6E-9				NR [~ 8900000] (imputed)	N
1545	chr6	125943235	125943236	rs2326187	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume x hypertension interaction (2df)	46,055 European ancestry individuals	NA	6q22.31	LOC643623	rs2326187-T	0.7878	2E-6				Affymetrix, Illumina [9900000] (imputed)	N
1545	chr6	125943235	125943236	rs2326187	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume (adjusted for hypertension)	46,055 European ancestry individuals	NA	6q22.31	LOC643623	rs2326187-T	0.7878	6E-7		0.035	[0.021-0.049] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1545	chr6	125943235	125943236	rs2326187	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	48,454 European ancestry individuals	NA	6q22.31	LOC643623	rs2326187-T	0.7878	9E-7		0.034	[0.02-0.048] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1546	chr6	125979711	125979712	rs60726027	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	6q22.31	RP11-624M8.1	rs60726027-T	NR	4E-8		0.0279112	[0.018-0.038] unit decrease	Affymetrix [321788] (imputed)	N
1546	chr6	126008371	126008372	rs2747716	30093612	O'Mara TA	2018-08-09	Nat Commun	Identification of nine new susceptibility loci for endometrial cancer.	Endometrial cancer (endometrioid histology)	8,758 European ancestry cases, 46,126 European ancestry controls	NA	6q22.31	HEY2, NCOA7	rs2747716-A	0.573668	4E-10		1.12	[1.08-1.16]	Affymetrix, Illumina [~ 11700000] (imputed)	N
1546	chr6	126008371	126008372	rs2747716	30093612	O'Mara TA	2018-08-09	Nat Commun	Identification of nine new susceptibility loci for endometrial cancer.	Endometrial cancer	12,906 European ancestry cases, 108,979 European ancestry controls	NA	6q22.31	HEY2, NCOA7	rs2747716-A	0.57	3E-10		1.1	[1.07-1.14]	Affymetrix, Illumina [~ 11700000] (imputed)	N
1546	chr6	126010115	126010116	rs2797160	27008869	Chen MM	2016-03-23	Hum Mol Genet	GWAS meta-analysis of 16 852 women identifies new susceptibility locus for endometrial cancer.	Endometrial cancer	4,907 European ancestry cases, 11,945 European ancestry controls	NA	6q22.31	LOC643623	rs2797160-?	0.578	4E-13		1.21	[NR]	Illumina [9486271] (imputed)	N
1546	chr6	126016579	126016580	rs13328298	27135401	Cheng TH	2016-05-02	Nat Genet	Five endometrial cancer risk loci identified through genome-wide association analysis.	Endometrial endometrioid carcinoma	2,082 European ancestry cases, 9,544 European ancestry controls	4,553 European ancestry cases, 27,600 European ancestry controls	6q22.31	HEY2, NCOA7	rs13328298-G	0.58	1E-11		1.15	[1.11-1.20]	Illumina [up to 2300000] (imputed)	N
1546	chr6	126016579	126016580	rs13328298	27135401	Cheng TH	2016-05-02	Nat Genet	Five endometrial cancer risk loci identified through genome-wide association analysis.	Endometrial cancer	2,082 European ancestry endometrioid cases, 130 European ancestry cases,  9,544 European ancestry controls	4,553 European ancestry endometrioid cases, 972 European ancestry cases, 27,600 European ancestry controls	6q22.31	HEY2, NCOA7	rs13328298-G	0.58	4E-10		1.13	[1.09-1.18]	Illumina [up to 2300000] (imputed)	N
1546	chr6	126022601	126022602	rs1777220	24096698	De Vivo I	2013-10-06	Hum Genet	Genome-wide association study of endometrial cancer in E2C2.	Endometrial cancer	up to 2,695 European ancestry cases, up to 2,777 European ancestry controls	up to 3,235 cases, up to 12,059 controls	6q22.31	LOC643623	rs1777220-?	NR	2E-6	(European, All type I)			Illumina [873935]	N
1546	chr6	126024300	126024301	rs142301939	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	6q22.31	NR	rs142301939-A	0.3415	6E-7	(Superior Frontal)	20.363516	[12.39-28.33] unit increase	Affymetrix, Illumina [NR]	N
1546	chr6	126024942	126024943	rs35846768	32527199	van Duijvenboden S	2020-06-11	Circ Genom Precis Med	Genetic Basis and Prognostic Value of Exercise QT Dynamics.	QT dynamics during exercise	28,449 European ancestry women, 24,412 European ancestry men	NA	6q22.31		rs35846768-C	0.707395	6E-10	(male)	0.0592666	[0.041-0.078] bpm decrease	Affymetrix [9800000] (imputed)	N
1546	chr6	126024942	126024943	rs35846768	32527199	van Duijvenboden S	2020-06-11	Circ Genom Precis Med	Genetic Basis and Prognostic Value of Exercise QT Dynamics.	QT dynamics during exercise	28,449 European ancestry women, 24,412 European ancestry men	NA	6q22.31		rs35846768-C	0.707	3E-11		0.041	[0.029-0.053] bpm decrease	Affymetrix [9800000] (imputed)	N
1546	chr6	126039676	126039677	rs1268068	34957435	Bonfiglio F	2021-12-08	Cell Genom	GWAS of stool frequency provides insights into gastrointestinal motility and irritable bowel syndrome.	Stool frequency	92,618 European ancestry women	NA	6q22.31		rs1268068-T	0.64	3E-8		0.0218	[0.014-0.029] unit decrease	Affymetrix [8817117] (imputed)	N
1546	chr6	126040434	126040435	rs1269175	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	6q22.31	NA	rs1269175-A	0.5111	8E-10		0.0105	[0.0072-0.0138] unit increase	NR [~ 27400000] (imputed)	N
1546	chr6	126041343	126041344	rs72969721	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		AL365259.1	rs72969721-?	NR	4E-10	(female)	0.618605	[NR] unit increase	Affymetrix [NR] (imputed)	N
1546	chr6	126049039	126049040	rs1268083	27322543	Gormley P	2016-06-20	Nat Genet	Meta-analysis of 375,000 individuals identifies 38 susceptibility loci for migraine.	Migraine	59,674 European ancestry cases, 316,078 European ancestry controls	NA	6q22.31	HEY2, NCOA7	rs1268083-T	0.52	5E-9		1.0416667	[1.03-1.05]	Affymetrix, Illumina, Perlegen [8094889] (imputed)	N
1546	chr6	126052358	126052359	rs2008027	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	6q22.31	NR	rs2008027-G	0.5043	4E-9		0.0272	[0.018-0.036] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1546	chr6	126052728	126052729	rs4895799	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6q22.31	NR	rs4895799-?	NR	6E-10				Affymetrix [~ 8270000] (imputed)	N
1546	chr6	126060824	126060825	rs72969726	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6q22.31	NR	rs72969726-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1546	chr6	126061501	126061502	rs7758115	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	6q22.31	NR	rs7758115-G	0.4997	4E-9		0.0232	[0.016-0.031] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1546	chr6	126067654	126067655	rs3966775	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	6q22.31	HEY2	rs3966775-A	0.528	7E-26		0.0199	[0.016-0.024] unit increase	Affymetrix [18391927] (imputed)	N
1546	chr6	126067654	126067655	rs3966775	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6q22.31		rs3966775-?	NR	9E-27				NR [~ 8900000] (imputed)	N
1546	chr6	126068000	126068001	rs980014	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	6q22.31	COL3A1, COL5A2, WDR75	rs980014-?		2E-18				NR [7428630] (imputed)	N
1546	chr6	126069635	126069636	rs3757217	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	6q22.31		rs3757217-C	NR	1E-8		0.0111	[0.0074-0.0148] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1546	chr6	126070788	126070789	rs7764016	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	6q22.31	HEY2, NCOA7	rs7764016-?		2E-26				NR [7428630] (imputed)	N
1546	chr6	126070788	126070789	rs7764016	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	6q22.31	NR	rs7764016-T	0.4877	6E-13	(Pars Opercularis)	7.2887735	[5.31-9.27] unit decrease	Affymetrix, Illumina [NR]	N
1546	chr6	126071574	126071575	rs1811852	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	6q22.31		rs1811852-C	NR	8E-19		0.0151	[0.012-0.018] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1546	chr6	126077656	126077657	rs7753038	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	6q22.31		rs7753038-?	NR	1E-37				NR [9705931] (imputed)	N
1546	chr6	126083657	126083658	rs10457469	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	HEY2	rs10457469-G	0.492773	8E-10	(196 ms)	0.0352533	[0.024-0.046] unit decrease	Affymetrix [10000000] (imputed)	N
1546	chr6	126083657	126083658	rs10457469	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	HEY2	rs10457469-G	0.492773	6E-9	(172 ms)	0.0330098	[0.022-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
1546	chr6	126083657	126083658	rs10457469	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	HEY2	rs10457469-G	0.492773	5E-9	(202 ms)	0.0342961	[0.023-0.045] unit decrease	Affymetrix [10000000] (imputed)	N
1546	chr6	126083657	126083658	rs10457469	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	HEY2	rs10457469-G	0.492773	5E-9	(174 ms)	0.0336898	[0.023-0.045] unit decrease	Affymetrix [10000000] (imputed)	N
1546	chr6	126083657	126083658	rs10457469	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	HEY2	rs10457469-G	0.492773	5E-10	(178 ms)	0.0352509	[0.024-0.046] unit decrease	Affymetrix [10000000] (imputed)	N
1546	chr6	126083657	126083658	rs10457469	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	HEY2	rs10457469-G	0.492773	4E-8	(152 ms)	0.0316909	[0.021-0.043] unit decrease	Affymetrix [10000000] (imputed)	N
1546	chr6	126083657	126083658	rs10457469	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	HEY2	rs10457469-G	0.492773	3E-9	(194 ms)	0.0339329	[0.023-0.045] unit decrease	Affymetrix [10000000] (imputed)	N
1546	chr6	126083657	126083658	rs10457469	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	HEY2	rs10457469-G	0.492773	2E-10	(180 ms)	0.0362266	[0.025-0.047] unit decrease	Affymetrix [10000000] (imputed)	N
1546	chr6	126083657	126083658	rs10457469	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.31	HEY2	rs10457469-G	0.492773	1E-8	(170 ms)	0.0319573	[0.021-0.043] unit decrease	Affymetrix [10000000] (imputed)	N
1546	chr6	126083657	126083658	rs10457469	32386560	Ramirez J	2020-04-29	Am J Hum Genet	Common Genetic Variants Modulate the Electrocardiographic Tpeak-to-Tend Interval.	TPE interval (resting)	71,338 European ancestry individuals	NA	6q22.31	HEY2	rs10457469-G	0.476	2E-8	(men)	0.042	[0.028-0.056] unit decrease	Affymetrix [~ 9000000] (imputed)	N
1546	chr6	126083657	126083658	rs10457469	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		6q22.31	HEY2	rs10457469-G	0.476422	3E-8		0.00763453	[0.0049-0.0103] unit decrease	Affymetrix [12370749]	N
1546	chr6	126085253	126085254	rs60132035	33838163	Luo S	2021-04-07	Kidney Int	Genome-wide association study of serum metabolites in the African American Study of Kidney Disease and Hypertension.	Serum metabolite concentrations in chronic kidney disease	619 African American individuals	NA	6q22.31	HEY2, NCOA7	rs60132035-?	NR	1E-10	(sphingomyelin (d18:1/20:1, d18:2/20:0))	1.35	[NR] unit increase	Illumina [14760605] (imputed)	N
1546	chr6	126090276	126090277	rs1159974	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	6q22.31		rs1159974-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1546	chr6	126090376	126090377	rs9388451	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	6q22.31	NR	rs9388451-?		3E-9				NR [7428630] (imputed)	N
1546	chr6	126090376	126090377	rs9388451	23872634	Bezzina CR	2013-07-21	Nat Genet	Common variants at SCN5A-SCN10A and HEY2 are associated with Brugada syndrome, a rare disease with high risk of sudden cardiac death.	Brugada syndrome	312 European ancestry cases, 1,115 European ancestry controls	594 European ancestry cases, 806 European ancestry controls, 208 Japanese ancestry cases, 1,1016 Japanese controls	6q22.31	NCOA7, HEY2	rs9388451-C	0.50	5E-17		1.58	[1.42-1.75]	Affymetrix [360149]	N
1546	chr6	126090915	126090916	rs117868697	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6q22.31	HEY2	rs117868697-T	NR	4E-8		0.062609	[0.04-0.085] unit increase	Affymetrix [319769] (imputed)	N
1547	chr6	126110819	126110820	rs72969741	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	6q22.31	NR	rs72969741-T	0.07	2E-6		1.0638298	[-0.99417-3.12183]	Affymetrix [at least 143006] (imputed)	N
1547	chr6	126111799	126111800	rs3734634	32619740	Makarawate P	2020-06-30	Heart Rhythm	Common and rare susceptibility genetic variants predisposing to Brugada Syndrome in Thailand.	Brugada syndrome	154 Thai cases, 432 Thai controls	NA	6q22.31	HEY2	rs3734634-A	0.68	8E-9		2.5	[1.80-3.40]	Illumina [5310833] (imputed)	N
1547	chr6	126115820	126115821	rs9398791	35210625	Barc J	2022-02-24	Nat Genet	Genome-wide association analyses identify new Brugada syndrome risk loci and highlight a new mechanism of sodium channel regulation in disease susceptibility.	Brugada syndrome	2,820 European ancestry cases, 10,001 European ancestry controls	NA	6q22.31	HEY2, NCOA7	rs9398791-C	0.51	1E-39		1.53	[1.44 - 1.63]	Affymetrix, Illumina [6990521] (imputed)	N
1547	chr6	126122279	126122280	rs9385385	33723403	Sha Z	2021-03-15	Nat Hum Behav	The genetic architecture of structural left-right asymmetry of the human brain.	Left-right brain asymmetry	32,256 European ancestry individuals	NA	6q22.32	NCOA7	rs9385385-T	0.45	1E-8				NR [9312144] (imputed)	N
1547	chr6	126154474	126154475	rs9375414	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6q22.32	NCOA7	rs9375414-A	0.402587	1E-15		0.018157413	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1547	chr6	126154474	126154475	rs9375414	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	6q22.32	NCOA7	rs9375414-A	0.402581	2E-11		0.015244481	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1547	chr6	126154474	126154475	rs9375414	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6q22.32	NCOA7	rs9375414-A	0.40258	3E-18		0.019624408	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1547	chr6	126166866	126166867	rs6922416	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	6q22.32	NCOA7	rs6922416-T	0.395228	1E-13		0.016865494	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1547	chr6	126166866	126166867	rs6922416	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	6q22.32	NCOA7	rs6922416-T	0.395203	6E-17		0.018905142	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1547	chr6	126174818	126174819	rs72969766	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		NCOA7	rs72969766-?	NR	7E-10	(female)	0.616471	[NR] unit increase	Affymetrix [NR] (imputed)	N
1547	chr6	126179110	126179111	rs6920965	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	6q22.32	NCOA7	rs6920965-A	0.397	7E-9		0.02120631	[0.014-0.028] unit increase	Affymetrix [~ 2500000] (imputed)	N
1547	chr6	126187584	126187585	rs72969772	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6q22.32	NCOA7	rs72969772-G	NR	1E-9		0.0620418	[0.042-0.082] unit increase	Affymetrix [319769] (imputed)	N
1547	chr6	126187584	126187585	rs72969772	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6q22.32	NCOA7	rs72969772-G	NR	1E-9		0.0621904	[0.042-0.082] unit increase	Affymetrix [319769] (imputed)	N
1547	chr6	126187584	126187585	rs72969772	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	6q22.32	NCOA7	rs72969772-G	NR	3E-8		0.0589748	[0.038-0.08] unit decrease	Affymetrix [321788] (imputed)	N
1547	chr6	126200885	126200886	rs75801442	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	6q22.32	NR	rs75801442-?	NR	2E-8	(grey matter)			NR [9227495] (imputed)	N
1547	chr6	126207916	126207917	rs191578827	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6q22.32	NR	rs191578827-?	NR	2E-18				Affymetrix [~ 8270000] (imputed)	N
1547	chr6	126207916	126207917	rs191578827	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6q22.32	NR	rs191578827-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
1547	chr6	126214623	126214624	rs11154334	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	6q22.32	NCOA7	rs11154334-A	0.6055	1E-15		0.2205	[0.17-0.27] mmHg decrease	Affymetrix [NR] (imputed)	N
1548	chr6	126223943	126223944	rs4897160	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	6q22.32		rs4897160-A	NR	2E-16		0.0145	[0.011-0.018] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
1548	chr6	126223943	126223944	rs4897160	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	6q22.32	NCOA7	rs4897160-A	0.477008	6E-11		0.014371591	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
1548	chr6	126223943	126223944	rs4897160	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	6q22.32	NCOA7	rs4897160-A	0.477014	6E-12		0.015122306	[0.011-0.019] unit increase	Affymetrix [93095623] (imputed)	N
1548	chr6	126223943	126223944	rs4897160	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6q22.32	NCOA7	rs4897160-A		2E-11		0.015	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
1548	chr6	126223943	126223944	rs4897160	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	6q22.32	NCOA7	rs4897160-A	0.47	2E-14		0.0238	[0.018-0.03] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1548	chr6	126223943	126223944	rs4897160	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	6q22.32	NCOA7	rs4897160-A	0.4828	2E-14		0.029735	[0.022-0.037] mg/dL increase	Affymetrix, Illumina [8217339] (imputed)	N
1548	chr6	126223943	126223944	rs4897160	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	6q22.32	NR	rs4897160-A	0.476	4E-6	(men)	0.0228	[0.013-0.032] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1548	chr6	126224715	126224716	rs6911752	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	6q22.32	NCOA7	rs6911752-G	NR	5E-11		0.0446386	[0.031-0.058] unit decrease	Affymetrix [321788] (imputed)	N
1548	chr6	126224869	126224869	rs200460262	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	6q22.32		rs200460262-CT	NR	2E-8		0.011	[0.0071-0.0149] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
1548	chr6	126228511	126228512	rs10782230	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	6q22.32	NR	rs10782230-A	0.48	2E-16		0.0151	[0.011-0.019] unit increase	NR [NR]	N
1548	chr6	126228511	126228512	rs10782230	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	6q22.32	NCOA7	rs10782230-A	0.480252	1E-11		0.014722648	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
1548	chr6	126228511	126228512	rs10782230	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	6q22.32		rs10782230-?	NR	2E-16				NR [~ 8900000] (imputed)	N
1548	chr6	126228511	126228512	rs10782230	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	6q22.32	NCOA7	rs10782230-A	0.4831	5E-16		0.1995	[0.15-0.25] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1548	chr6	126248373	126248374	rs9375417	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6q22.32	NR	rs9375417-?	NR	4E-10				Affymetrix [~ 8270000] (imputed)	N
1548	chr6	126248373	126248374	rs9375417	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6q22.32	NR	rs9375417-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
1548	chr6	126258537	126258538	rs181309710	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6q22.32	NR	rs181309710-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
1548	chr6	126263894	126263895	rs6934510	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	6q22.32	NR	rs6934510-G	NR	6E-10		0.0179	[0.012-0.024] unit increase	Affymetrix [9000000] (imputed)	N
1548	chr6	126284212	126284213	rs6906366	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	6q22.32	HINT3	rs6906366-A	NR	3E-8		0.0301823	[0.019-0.041] unit increase	Affymetrix [321788] (imputed)	N
1548	chr6	126290264	126290265	rs62426379	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6q22.32	HINT3	rs62426379-G	NR	2E-13		0.0208828	[0.015-0.026] unit increase	Affymetrix [319769] (imputed)	N
1548	chr6	126290264	126290265	rs62426379	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6q22.32	HINT3	rs62426379-G	NR	2E-14		0.0217896	[0.016-0.027] unit increase	Affymetrix [319769] (imputed)	N
1548	chr6	126290264	126290265	rs62426379	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	6q22.32	HINT3	rs62426379-G	NR	6E-11		0.0192974	[0.014-0.025] unit decrease	Affymetrix [321788] (imputed)	N
1548	chr6	126290541	126290542	rs2206940	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6q22.32	NR	rs2206940-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
1548	chr6	126331987	126331988	rs6920788	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6q22.32	TRMT11	rs6920788-C	NR	2E-11		0.0209553	[0.015-0.027] unit decrease	Affymetrix [319769] (imputed)	N
1548	chr6	126331987	126331988	rs6920788	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6q22.32	TRMT11	rs6920788-C	NR	7E-13		0.0222992	[0.016-0.028] unit decrease	Affymetrix [319769] (imputed)	N
1548	chr6	126331987	126331988	rs6920788	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	6q22.32	TRMT11	rs6920788-C	NR	3E-19		0.0290102	[0.023-0.035] unit increase	Affymetrix [321788] (imputed)	N
1548	chr6	126331987	126331988	rs6920788	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6q22.32	TRMT11	rs6920788-C	NR	2E-8		0.0174054	[0.011-0.023] unit increase	Affymetrix [321016] (imputed)	N
1548	chr6	126331987	126331988	rs6920788	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	6q22.32		rs6920788-?	NR	5E-15				NR [~ 8900000] (imputed)	N
1548	chr6	126331987	126331988	rs6920788	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	6q22.32	NR	rs6920788-T	0.71	4E-15		0.016	[0.012-0.02] unit increase	Affymetrix [2446094] (imputed)	N
1548	chr6	126331987	126331988	rs6920788	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	6q22.32	NR	rs6920788-T	0.71	5E-8				Affymetrix [2446094] (imputed)	N
1549	chr6	126369041	126369042	rs557210704	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6q22.32	NR	rs557210704-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1549	chr6	126375580	126375581	rs1268119	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	6q22.32	TRMT11	rs1268119-T	NR	3E-9		0.0211318	[0.014-0.028] unit increase	Affymetrix [323858] (imputed)	N
1549	chr6	126375580	126375581	rs1268119	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	6q22.32	TRMT11	rs1268119-T	0.279614	2E-13		0.0151304	[0.011-0.019] unit decrease	NR [13737936] (imputed)	N
1549	chr6	126375580	126375581	rs1268119	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6q22.32		rs1268119-?	NR	1E-12		0.0161574	[0.012-0.021] unit decrease	Affymetrix [20259828] (imputed)	N
1549	chr6	126386402	126386403	rs2326201	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	6q22.32		rs2326201-?	NR	1E-17				NR [~ 8900000] (imputed)	N
1549	chr6	126387617	126387618	rs141259875	28525603	Ortega-Alonso A	2017-05-19	Schizophr Bull	Genome-Wide Association Study of Psychosis Proneness in the Finnish Population.	Psychosis proneness (hypomanic personality scale and revised physical anhedonia scale)	3,787 Finnish ancestry individuals	NA	6q22.32	TRMT11	rs141259875-?		4E-6				Illumina [~ 9600000] (imputed)	N
1549	chr6	126402417	126402418	rs2186061	31786426	Farias Tempaku P	2019-08-14	Sleep Med	Genome-wide association study reveals two novel risk alleles for incident obstructive sleep apnea in the EPISONO cohort.	Obstructive sleep apnea trait (apnea hypopnea index, change over time)	404 European ancestry individuals, 97 Black individuals, 20 Asian ancestry individuals, 20 Indigenous individuals, 138 mixed race individuals, 27 individuals	NA	6q22.32	NR	rs2186061-C	0.094	4E-6		0.2387	[0.14-0.34] unit increase	Illumina [up to 730525]	N
1549	chr6	126412952	126412953	rs11154343	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	6q22.32	NR	rs11154343-T	0.3121	1E-12	(total)	612.917	[444.22-781.62] unit decrease	Affymetrix, Illumina [NR]	N
1549	chr6	126446999	126446999	rs144959600	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6q22.32	RP11-527F13.1	rs144959600-TA	NR	8E-10		0.0185442	[0.013-0.024] unit decrease	Affymetrix [319769] (imputed)	N
1549	chr6	126450019	126450020	rs11154345	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6q22.32	RP11-527F13.1	rs11154345-G	NR	6E-10		0.0187837	[0.013-0.025] unit decrease	Affymetrix [319769] (imputed)	N
1549	chr6	126450078	126450078	rs55671240	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 12, vertical position of sublabial sulcus relative to central midface)	2,187 European ancestry individuals	NA	6q22.32	NR	rs55671240-A	0.4081	2E-6		0.1462	[0.086-0.206] unit increase	Illumina [10677593] (imputed)	N
1549	chr6	126459464	126459465	rs9491565	33531474	Burton CL	2021-02-02	Transl Psychiatry	Genome-wide association study of pediatric obsessive-compulsive traits: shared genetic risk between traits and disorder.	Obsessive-compulsive traits	5,018 European ancestry children and adolescents	NA	6q22.32	LOC101928096	rs9491565-?	NR	1E-6		0.109	[0.066-0.152] unit increase	Illumina [7870334] (imputed)	N
1549	chr6	126459464	126459465	rs9491565	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	6q22.32	NR	rs9491565-G	0.326849	2E-22		0.0317518	[0.025-0.038] unit increase	NR [19129689] (imputed)	N
1549	chr6	126466604	126466605	rs4363059	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	6q22.32		rs4363059-?	NR	4E-15				NR [~ 8900000] (imputed)	N
1549	chr6	126466604	126466605	rs4363059	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		6q22.32	HINT3, TRMT11	rs4363059-T	NR	6E-10		0.0386951	NR unit increase	NR [NR] (imputed)	N
1549	chr6	126478410	126478411	rs550600266	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6q22.32	NR	rs550600266-?	NR	8E-18				Affymetrix [~ 8270000] (imputed)	N
1550	chr6	126488363	126488364	rs1977512	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6q22.32	NR	rs1977512-?	NR	6E-10				Affymetrix [~ 8270000] (imputed)	N
1550	chr6	126497088	126497089	rs993744	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	6q22.32		rs993744-?	NR	2E-12				NR [~ 8900000] (imputed)	N
1550	chr6	126504798	126504799	rs72977827	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6q22.32	RP11-527F13.1	rs72977827-G	NR	2E-30		0.0899323	[0.075-0.105] unit increase	Affymetrix [319769] (imputed)	N
1550	chr6	126504798	126504799	rs72977827	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6q22.32	RP11-527F13.1	rs72977827-G	NR	9E-31		0.0905996	[0.075-0.106] unit increase	Affymetrix [319769] (imputed)	N
1550	chr6	126504798	126504799	rs72977827	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6q22.32	RP11-527F13.1	rs72977827-G	NR	3E-12		0.0555069	[0.04-0.071] unit increase	Affymetrix [321114] (imputed)	N
1550	chr6	126504798	126504799	rs72977827	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	6q22.32	RP11-527F13.1	rs72977827-G	NR	3E-16		0.066773	[0.051-0.083] unit decrease	Affymetrix [321788] (imputed)	N
1550	chr6	126504798	126504799	rs72977827	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6q22.32	RP11-527F13.1	rs72977827-G	NR	4E-16		0.0639999	[0.049-0.079] unit decrease	Affymetrix [321016] (imputed)	N
1550	chr6	126504798	126504799	rs72977827	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6q22.32	RP11-527F13.1	rs72977827-G	NR	3E-15		0.0627607	[0.047-0.078] unit increase	Affymetrix [321169] (imputed)	N
1550	chr6	126504798	126504799	rs72977827	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6q22.32	NR	rs72977827-?	NR	5E-29				Affymetrix [~ 8270000] (imputed)	N
1550	chr6	126505401	126505402	rs1455740	29724592	Pottier C	2018-04-30	Lancet Neurol	Potential genetic modifiers of disease risk and age at onset in patients with frontotemporal lobar degeneration and GRN mutations: a genome-wide association study.	Behavioural changes in frontotemporal lobe dementia	262 European ancestry cases, 120 European ancestry controls	NA	6q22.32	TRMT11	rs1455740-G	0.68	7E-6		2.4390244	[1.25-50]	Illumina [7033776] (imputed)	N
1550	chr6	126562707	126562708	rs9401867	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6q22.32	PPP1R14BP5	rs9401867-G	NR	2E-8		0.0298441	[0.019-0.04] unit decrease	Affymetrix [319769] (imputed)	N
1550	chr6	126562707	126562708	rs9401867	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6q22.32	PPP1R14BP5	rs9401867-G	NR	2E-8		0.0298652	[0.019-0.04] unit decrease	Affymetrix [319769] (imputed)	N
1550	chr6	126572956	126572957	rs17810029	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	6q22.32	NR	rs17810029-T	NR	1E-9		0.0373	[0.025-0.049] unit increase	Affymetrix [9000000] (imputed)	N
1550	chr6	126573061	126573062	rs72977840	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	6q22.32	NR	rs72977840-T	NR	8E-13		0.038	[0.028-0.048] unit decrease	Affymetrix [9000000] (imputed)	N
1550	chr6	126573223	126573224	rs111809096	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6q22.32	PPP1R14BP5	rs111809096-A	NR	1E-18		0.11671	[0.091-0.143] unit increase	Affymetrix [319769] (imputed)	N
1550	chr6	126573223	126573224	rs111809096	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6q22.32	PPP1R14BP5	rs111809096-A	NR	3E-19		0.118366	[0.092-0.144] unit increase	Affymetrix [319769] (imputed)	N
1550	chr6	126573223	126573224	rs111809096	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6q22.32	PPP1R14BP5	rs111809096-A	NR	1E-11		0.0902809	[0.064-0.116] unit increase	Affymetrix [321114] (imputed)	N
1550	chr6	126573223	126573224	rs111809096	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	6q22.32	PPP1R14BP5	rs111809096-A	NR	3E-8		0.0764666	[0.049-0.103] unit decrease	Affymetrix [321788] (imputed)	N
1550	chr6	126573223	126573224	rs111809096	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6q22.32	PPP1R14BP5	rs111809096-A	NR	1E-11		0.0903587	[0.064-0.117] unit increase	Affymetrix [321169] (imputed)	N
1550	chr6	126577061	126577062	rs6900611	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	6q22.32	PPP1R14BP5	rs6900611-C	NR	2E-9		0.0228018	[0.015-0.03] unit increase	Affymetrix [321788] (imputed)	N
1550	chr6	126577061	126577062	rs6900611	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6q22.32	PPP1R14BP5	rs6900611-C	NR	2E-8		0.0206562	[0.013-0.028] unit increase	Affymetrix [321016] (imputed)	N
1550	chr6	126577061	126577062	rs6900611	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6q22.32	PPP1R14BP5	rs6900611-C	NR	6E-9		0.023321	[0.015-0.031] unit increase	Affymetrix [323123] (imputed)	N
1550	chr6	126588588	126588589	rs17753769	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6q22.32	PPP1R14BP5	rs17753769-G	NR	4E-10		0.0496729	[0.034-0.065] unit increase	Affymetrix [319769] (imputed)	N
1550	chr6	126588588	126588589	rs17753769	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6q22.32	PPP1R14BP5	rs17753769-G	NR	4E-10		0.0497962	[0.034-0.065] unit increase	Affymetrix [319769] (imputed)	N
1550	chr6	126588588	126588589	rs17753769	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6q22.32	NR	rs17753769-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
1550	chr6	126590136	126590137	rs143214539	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6q22.32	NR	rs143214539-?	NR	2E-19				Affymetrix [~ 8270000] (imputed)	N
1550	chr6	126591771	126591772	rs6916556	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6q22.32	PPP1R14BP5	rs6916556-A	NR	7E-10		0.0268935	[0.018-0.035] unit decrease	Affymetrix [319769] (imputed)	N
1550	chr6	126591771	126591772	rs6916556	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6q22.32	PPP1R14BP5	rs6916556-A	NR	1E-9		0.0266263	[0.018-0.035] unit decrease	Affymetrix [319769] (imputed)	N
1550	chr6	126597387	126597388	rs4897174	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6q22.32	PPP1R14BP5	rs4897174-A	NR	1E-11		0.0324848	[0.023-0.042] unit increase	Affymetrix [323123] (imputed)	N
1550	chr6	126597463	126597464	rs1902257	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	6q22.32	CENPW	rs1902257-C	0.964759742097658	8E-7	(F_Desulfovibrionaceae_HB)	0.771855	[0.46-1.08] unit increase	Illumina [7711310] (imputed)	N
1550	chr6	126597463	126597464	rs1902257	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	6q22.32	CENPW	rs1902257-C	0.964759742097658	7E-6	(C_Deltaproteobacteria_HB)	0.745132	[0.42-1.07] unit increase	Illumina [7711310] (imputed)	N
1550	chr6	126598135	126598136	rs149232047	28753643	Yeo A	2017-07-28	PLoS One	Pharmacogenetic meta-analysis of baseline risk factors, pharmacodynamic, efficacy and tolerability endpoints from two large global cardiovascular outcomes trials for darapladib.	Diarrhoea in darapladib-treated cardiovascular disease (time to event)	481 European ancestry cases	NA	6q22.32	intergenic	rs149232047-G	0.0075	5E-9		4.9	[2.86-8.33]	Affymetrix, Illumina [9334585] (imputed)	N
1550	chr6	126603939	126603940	rs2788723	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6q22.32	PPP1R14BP5	rs2788723-G	NR	8E-16		0.029822	[0.023-0.037] unit decrease	Affymetrix [319769] (imputed)	N
1550	chr6	126603939	126603940	rs2788723	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6q22.32	PPP1R14BP5	rs2788723-G	NR	4E-16		0.0301874	[0.023-0.037] unit decrease	Affymetrix [319769] (imputed)	N
1550	chr6	126603939	126603940	rs2788723	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6q22.32	PPP1R14BP5	rs2788723-G	NR	4E-8		0.0206854	[0.013-0.028] unit decrease	Affymetrix [321169] (imputed)	N
1550	chr6	126604297	126604298	rs9638003	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6q22.32	PPP1R14BP5	rs9638003-A	NR	2E-9		0.026359	[0.018-0.035] unit increase	Affymetrix [321016] (imputed)	N
1550	chr6	126609123	126609124	rs607779	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	6q22.32	NR	rs607779-?	NR	3E-30				Affymetrix [NR]	N
1550	chr6	126613945	126613946	rs76470478	32198502	Shin J	2020-03-20	Cereb Cortex	Global and Regional Development of the Human Cerebral Cortex: Molecular Architecture and Occupational Aptitudes.	Cortical surface area (visual PC2)	23,784 European ancestry individuals	19,512 European ancestry individuals, 6,234 individuals	6q22.32	PPP1R14BP5	rs76470478-?	NR	3E-9	(EA)	0.2206	[0.15-0.29] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1550	chr6	126613945	126613946	rs76470478	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	6q22.32	NR	rs76470478-T	0.0385	2E-10	(Cuneus)	15.297541	[10.56-20.03] unit decrease	Affymetrix, Illumina [NR]	N
1550	chr6	126614100	126614101	rs12213021	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6q22.32		rs12213021-?	NR	7E-12				NR [~ 8900000] (imputed)	N
1551	chr6	126623119	126623120	rs9401873	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6q22.32	CENPW	rs9401873-T	0.6522	2E-6		0.032	[0.019-0.045] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1551	chr6	126657471	126657472	rs4897175	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6q22.32	CENPW	rs4897175-G	NR	2E-12		0.0216403	[0.016-0.028] unit increase	Affymetrix [323123] (imputed)	N
1551	chr6	126659042	126659043	rs6919397	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 5)	19,670 European ancestry individuals	NA	6q22.32		rs6919397-?	NR	1E-31				NR [9705931] (imputed)	N
1551	chr6	126659042	126659043	rs6919397	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	6q22.32	CENPW	rs6919397-T	0.459046	4E-8		5.48	z score increase	NR [10847151] (imputed)	N
1551	chr6	126659042	126659043	rs6919397	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling nervous	373,121 European ancestry individuals	NA	6q22.32	CENPW	rs6919397-T	0.459046	3E-9		5.96	z score increase	NR [10847151] (imputed)	N
1551	chr6	126660355	126660355	rs79950493	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6q22.32	CENPW	rs79950493-TAGG	NR	3E-24		0.0312592	[0.025-0.037] unit increase	Affymetrix [323123] (imputed)	N
1551	chr6	126664332	126664333	rs17754780	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	6q22.32	NR	rs17754780-?	NR	1E-10	(left lateral orbitofrontal)			NR [9227495] (imputed)	N
1551	chr6	126666647	126666648	rs117892760	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	6q22.32	NR	rs117892760-T	0.0355	2E-19	(Pericalcarine)	26.23083	[20.54-31.92] unit decrease	Affymetrix, Illumina [NR]	N
1551	chr6	126674353	126674354	rs2045258	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Type 1 diabetes	6,670 European ancestry cases, 22,308 European ancestry controls	NA	6q22.32	CENPW	rs2045258-G	0.449	2E-9		1.146		Illumina [252970]	N
1551	chr6	126674371	126674371	rs11423823	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	6q22.32		rs11423823-CT	NR	8E-18		0.021	[0.016-0.026] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
1551	chr6	126674371	126674371	rs11423823	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	6q22.32		rs11423823-CT	NR	1E-9		0.0148	[0.01-0.02] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
1551	chr6	126674371	126674371	rs11423823	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	6q22.32	NR	rs11423823-CT	0.505367	5E-9		0.05879	[0.039-0.078] unit decrease	Affymetrix [21375087] (imputed)	N
1551	chr6	126674371	126674371	rs11423823	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	6q22.32	NR	rs11423823-?	NR	3E-14	(total brain volume)			NR [9227495] (imputed)	N
1551	chr6	126678267	126678268	rs9388487	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6q22.32	NR	rs9388487-?	NR	3E-7		5.113	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1551	chr6	126678331	126678331	rs35510806	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6q22.32	CENPW	rs35510806-TA	NR	2E-11		0.018926	[0.013-0.024] unit decrease	Affymetrix [319769] (imputed)	N
1551	chr6	126678331	126678331	rs35510806	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6q22.32	CENPW	rs35510806-TA	NR	5E-10		0.0175753	[0.012-0.023] unit decrease	Affymetrix [319769] (imputed)	N
1551	chr6	126678331	126678331	rs35510806	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6q22.32	CENPW	rs35510806-TA	NR	7E-9		0.0165016	[0.011-0.022] unit decrease	Affymetrix [321169] (imputed)	N
1551	chr6	126683593	126683594	rs9398803	29146897	Pirastu N	2017-11-17	Nat Commun	GWAS for male-pattern baldness identifies 71 susceptibility loci explaining 38% of the risk.	Male-pattern baldness	25,662 British ancestry cases, 17,928 British ancestry controls	13,367 European ancestry cases, 11,851 European ancestry controls, 3,436 cases, 2,435 controls	6q22.32	CENPW	rs9398803-A	NR	2E-17		0.119565	[0.092-0.147] unit decrease	Affymetrix [27512692] (imputed)	N
1551	chr6	126685910	126685911	rs192755027	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6q22.32	NR	rs192755027-?	NR	5E-24				Affymetrix [~ 8270000] (imputed)	N
1551	chr6	126685910	126685911	rs192755027	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6q22.32	NR	rs192755027-?	NR	2E-11				Affymetrix [~ 8270000] (imputed)	N
1551	chr6	126686406	126686407	rs12202204	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	6q22.32	CENPW	rs12202204-A	0.686199	1E-11		0.00358751	[0.0025-0.0047] unit decrease	Affymetrix [13995440] (imputed)	N
1551	chr6	126686406	126686407	rs12202204	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	6q22.32	NR	rs12202204-?	NR	2E-8	(total brain volume)			NR [9227495] (imputed)	N
1551	chr6	126689715	126689716	rs148738891	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6q22.32	CENPW	rs148738891-G	NR	2E-8		0.0361311	[0.024-0.049] unit decrease	Affymetrix [319769] (imputed)	N
1551	chr6	126689715	126689716	rs148738891	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6q22.32	CENPW	rs148738891-G	NR	7E-9		0.0372994	[0.025-0.05] unit decrease	Affymetrix [319769] (imputed)	N
1551	chr6	126689715	126689716	rs148738891	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6q22.32	NR	rs148738891-?	NR	4E-10				Affymetrix [~ 8270000] (imputed)	N
1551	chr6	126698718	126698719	rs9388489	19430480	Barrett JC	2009-05-10	Nat Genet	Genome-wide association study and meta-analysis find that over 40 loci affect risk of type 1 diabetes.	Type 1 diabetes	7,514 European ancestry cases, 9,045 European ancestry controls	4,267 European ancestry cases, 4,670 European ancestry controls, 4,342 European ancestry trios from 2,319 families	6q22.32	C6orf173	rs9388489-G	0.45	4E-13		1.17	[1.10-1.24]	Affymetrix, Illumina [841622] (imputed)	N
1551	chr6	126703389	126703390	rs9398804	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	6q22.32		rs9398804-A	0.439103	4E-12		0.015781246	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1551	chr6	126703389	126703390	rs9398804	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	6q22.32		rs9398804-?	NR	3E-11				NR [~ 8900000] (imputed)	N
1551	chr6	126704794	126704795	rs9388490	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	8,072 individuals	NA	6q22.32		rs9388490-T	0.44	5E-8				NR [13131314] (imputed)	N
1551	chr6	126704794	126704795	rs9388490	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	6q22.32		rs9388490-T	0.44	8E-161		27.02	z score increase	Affymetrix [9061022] (imputed)	N
1551	chr6	126704794	126704795	rs9388490	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	6q22.32		rs9388490-T	0.44	1E-91		20.31	z score increase	Affymetrix [9061022] (imputed)	N
1551	chr6	126704794	126704795	rs9388490	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	6q22.32		rs9388490-T	NR	2E-103		0.0356	[0.032-0.039] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1551	chr6	126704794	126704795	rs9388490	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	6q22.32	NR	rs9388490-T	0.4375	1E-17				NR [9056863] (imputed)	N
1551	chr6	126704794	126704795	rs9388490	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	6q22.32	AL356534.1	rs9388490-T	0.4394	1E-130		0.0462	[0.042-0.05] unit increase	Affymetrix [18391927] (imputed)	N
1551	chr6	126704794	126704795	rs9388490	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	6q22.32	FAM117B, ICA1L, WDR12, CARF, NBEAL1, CYP20A1, ABI2	rs9388490-?		2E-13				NR [7428630] (imputed)	N
1551	chr6	126704794	126704795	rs9388490	32198502	Shin J	2020-03-20	Cereb Cortex	Global and Regional Development of the Human Cerebral Cortex: Molecular Architecture and Occupational Aptitudes.	Cortical surface area (global PC1)	23,784 European ancestry individuals	19,512 European ancestry individuals, 6,234 individuals	6q22.32	CENPW	rs9388490-?	NR	2E-9		0.832	[0.56-1.1] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1551	chr6	126704794	126704795	rs9388490	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	6q22.32	CENPW	rs9388490-T	0.4346	6E-10		0.012601547	[0.0086-0.0166] unit increase	Affymetrix [up to 18485882] (imputed)	N
1551	chr6	126704794	126704795	rs9388490	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	6q22.32	NR	rs9388490-?	NR	5E-9	(female)	0.14189	[0.094-0.189] unit increase	Affymetrix [7794483] (imputed)	N
1551	chr6	126704794	126704795	rs9388490	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	6q22.32	NR	rs9388490-?	NR	1E-23		0.22204	[0.18-0.27] unit increase	Affymetrix [7794483] (imputed)	N
1551	chr6	126704794	126704795	rs9388490	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	6q22.32	NR	rs9388490-?	NR	1E-16	(male)	0.28949	[0.22-0.36] unit increase	Affymetrix [7794483] (imputed)	N
1551	chr6	126704794	126704795	rs9388490	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	6q22.32	Intergenic	rs9388490-T	0.4544	1E-17	(MTAG)	0.0141	[0.011-0.017] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1551	chr6	126704794	126704795	rs9388490	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	6q22.32	Intergenic	rs9388490-C	0.5456	4E-9		0.0134	[0.0089-0.0179] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1551	chr6	126704794	126704795	rs9388490	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6q22.32		rs9388490-T	0.4437	1E-10		0.0091	[0.0064-0.0118] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1551	chr6	126704794	126704795	rs9388490	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6q22.32	Intergenic	rs9388490-T	0.4437	8E-15	(MTAG)	0.0102	[0.0077-0.0127] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1551	chr6	126704794	126704795	rs9388490	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	6q22.32	Intergenic	rs9388490-T	0.4433	4E-13	(MTAG)	0.0167	[0.012-0.021] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1551	chr6	126704794	126704795	rs9388490	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	6q22.32	CENPW	rs9388490-T	NR	4E-11		0.019881528	[0.014-0.026] unit increase	Affymetrix [NR]	N
1551	chr6	126704794	126704795	rs9388490	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		6q22.32	CENPW	rs9388490-T	NR	2E-19		0.0559537	NR unit decrease	NR [NR] (imputed)	N
1551	chr6	126707845	126707846	rs11307281	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	6q22.32		rs11307281-C	NR	5E-18		0.0168	[0.013-0.021] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
1551	chr6	126707845	126707846	rs11307281	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	6q22.32		rs11307281-C	0.459737	5E-17		0.018911695	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1551	chr6	126712246	126712247	rs1578060	30659077	Onengut-Gumuscu S	2019-01-18	Diabetes Care	Type 1 Diabetes Risk in African-Ancestry Participants and Utility of an Ancestry-Specific Genetic Risk Score.	Type 1 diabetes	1,021 African American cases, 2,928 African American controls	NA	6q22.32	CENPW	rs1578060-C	0.13	2E-6		1.42	[1.23-1.64]	Illumina [114874]	N
1551	chr6	126712246	126712247	rs1578060	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	Height	19,965 British ancestry individuals from 6863 families.	NA	6q22.32	NR	rs1578060-C	0.445145	8E-10		0.004162694	[0.0028-0.0055] m increase	Illumina [24111857] (imputed)	N
1551	chr6	126717063	126717064	rs1591805	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	6q22.32	CENPW	rs1591805-A	0.495455	3E-7		1.04	[1.02-1.06]	NR [8126035] (imputed)	N
1551	chr6	126717063	126717064	rs1591805	32198502	Shin J	2020-03-20	Cereb Cortex	Global and Regional Development of the Human Cerebral Cortex: Molecular Architecture and Occupational Aptitudes.	Cortical surface area (visual PC2)	23,784 European ancestry individuals	19,512 European ancestry individuals, 6,234 individuals	6q22.32	CENPW	rs1591805-?	NR	2E-9	(EA)	0.0793	[0.053-0.105] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1551	chr6	126717063	126717064	rs1591805	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	6q22.32	NR	rs1591805-?	NR	1E-8	(X4th ventricle)			NR [9227495] (imputed)	N
1551	chr6	126717063	126717064	rs1591805	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	6q22.32	NR	rs1591805-?	NR	7E-9	(male)	0.15054	[0.1-0.201] unit decrease	Affymetrix [7794483] (imputed)	N
1551	chr6	126717063	126717064	rs1591805	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	6q22.32	NR	rs1591805-?	NR	1E-7		0.11186	[0.07-0.153] unit decrease	Affymetrix [7794483] (imputed)	N
1551	chr6	126717063	126717064	rs1591805	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	6q22.32	CENPW, MIR588	rs1591805-A	0.5008	3E-9		0.0795	[0.052-0.107] unit increase	Affymetrix [~ 11900000] (imputed)	N
1551	chr6	126717063	126717064	rs1591805	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	6q22.32	CENPW	rs1591805-A	0.4927	1E-10		0.037	[0.026-0.048] unit increase	Affymetrix [at least 7947838] (imputed)	N
1551	chr6	126717063	126717064	rs1591805	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	6q22.32	CENPW	rs1591805-A	0.4908	2E-10		0.0412	[0.028-0.054] unit increase	NR [8041861] (imputed)	N
1551	chr6	126717063	126717064	rs1591805	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	6q22.32	CENPW	rs1591805-A	0.491	2E-10		0.041	[0.027-0.055] unit increase	Affymetrix [7947838] (imputed)	N
1551	chr6	126727907	126727908	rs4897178	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	6q22.32	NR	rs4897178-T	0.5512	1E-18	(Lateral Orbitofrontal)	12.1455345	[9.45-14.85] unit decrease	Affymetrix, Illumina [NR]	N
1551	chr6	126727929	126727930	rs4897179	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	6q22.32	NR	rs4897179-A	0.4594	8E-17	(Caudal Middle Frontal)	13.683892	[10.46-16.9] unit increase	Affymetrix, Illumina [NR]	N
1551	chr6	126732510	126732511	rs75343521	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	6q22.32	NR	rs75343521-?	NR	2E-9	(right lateral occipital)			NR [9227495] (imputed)	N
1551	chr6	126732510	126732511	rs75343521	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	6q22.32	NR	rs75343521-?	NR	1E-9	(right lingual)			NR [9227495] (imputed)	N
1551	chr6	126733139	126733140	rs112166936	31809533	Han X	2019-09-06	Hum Mol Genet	Genome-wide association analysis of 95 549 individuals identifies novel loci and genes influencing optic disc morphology.	Optic disc size	67,040 British ancestry individuals	28,509 European ancestry individuals	6q22.32	CENPW	rs112166936-A	0.55	1E-22		0.02	unit decrease	Affymetrix [8928767] (imputed)	N
1551	chr6	126745632	126745633	rs139214174	32198502	Shin J	2020-03-20	Cereb Cortex	Global and Regional Development of the Human Cerebral Cortex: Molecular Architecture and Occupational Aptitudes.	Cortical surface area (visual PC2)	23,784 European ancestry individuals	19,512 European ancestry individuals, 6,234 individuals	6q22.32	MIR588	rs139214174-?	NR	2E-11	(EA)	0.2502	[0.18-0.32] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1552	chr6	126747109	126747110	rs34539692	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6q22.32	MIR588	rs34539692-C	NR	5E-15		0.0257425	[0.019-0.032] unit decrease	Affymetrix [323123] (imputed)	N
1552	chr6	126752873	126752874	rs1538170	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6q22.32	CENPW	rs1538170-T	0.4475	2E-12	(EA)	0.0263	[0.019-0.034] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1552	chr6	126752873	126752874	rs1538170	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6q22.32	CENPW	rs1538170-T	0.4475	2E-10	(EA,men)	0.0338	[0.023-0.044] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1552	chr6	126752883	126752884	rs1538171	25751624	Onengut-Gumuscu S	2015-04-01	Nat Genet	Fine mapping of type 1 diabetes susceptibility loci and evidence for colocalization of causal variants with lymphoid gene enhancers.	Type 1 diabetes	6,683 European ancestry cases, 12,173 European ancestry controls, 2,601 European ancestry affected sibling pair families, 69 European ancestry trios	NA	6q22.32	Intergenic	rs1538171-G	0.45	7E-10		1.12		Illumina [135870]	N
1552	chr6	126755641	126755642	rs4897182	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	6q22.32	CENPW	rs4897182-G	0.4553	3E-8		0.047	[0.031-0.063] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1552	chr6	126755641	126755642	rs4897182	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	6q22.32	CENPW	rs4897182-G	0.4553	2E-7	(EA)	0.0513	[0.032-0.071] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1552	chr6	126759032	126759033	rs9385399	25281659	van der Valk RJ	2014-10-03	Hum Mol Genet	A novel common variant in DCST2 is associated with length in early life and height in adulthood.	Infant length	28,238 European ancestry individuals	NA	6q22.32	C6orf173	rs9385399-T	0.46	2E-10		0.055	[0.037-0.073] unit increase	Affymetrix, Illumina [2193675] (imputed)	N
1552	chr6	126760993	126760994	rs2184968	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	6q22.32	NR	rs2184968-C	0.45099999999999996	9E-11		0.0202431	[0.014-0.026] unit increase	Affymetrix [16577424] (imputed)	N
1552	chr6	126764189	126764190	rs9385400	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body fat percentage and type 2 diabetes (pairwise)	200,863 European ancestry individuals, 24,401 East Asian, South Asian and African American ancestry individuals	NA	6q22.32	CENPW	rs9385400-T	0.5457	4E-11				Affymetrix, Illumina [2331072] (imputed)	N
1552	chr6	126765217	126765218	rs562189384	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6q22.32	NR	rs562189384-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
1552	chr6	126767599	126767600	rs1361108	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical thickness (MOSTest)	26,502 European ancestry individuals	NA	6q22.32	CNTN2, TMEM81, RBBP5, DSTYK, TMCC2, NUAK2	rs1361108-?		3E-9				NR [7428630] (imputed)	N
1552	chr6	126767599	126767600	rs1361108	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	6q22.32	NR	rs1361108-T	0.453803	4E-84		0.0596016	[0.054-0.066] unit decrease	NR [19129689] (imputed)	N
1552	chr6	126767599	126767600	rs1361108	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	6q22.32	CENPW, MIR588	rs1361108-C	0.5417	3E-8		0.0738	[0.046-0.101] unit increase	Affymetrix [~ 11900000] (imputed)	N
1552	chr6	126767599	126767600	rs1361108	21998595	N'Diaye A	2011-10-06	PLoS Genet	Identification, replication, and fine-mapping of Loci associated with adult height in individuals of african ancestry.	Height	20,427 African ancestry individuals	Up to 16,436 African American individuals	6q22.32	intergenic	rs1361108-T	0.30	9E-6		0.038	[0.020-0.056] unit increase	Affymetrix, Illumina [3310998] (imputed)	N
1552	chr6	126767599	126767600	rs1361108	21102462	Elks CE	2010-11-21	Nat Genet	Thirty new loci for age at menarche identified by a meta-analysis of genome-wide association studies.	Menarche (age at onset)	86,142 European ancestry female individuals, 557 Old Order Amish (founder/genetic isolate) female individuals, 1,103 Erasmus Rucphen (founder/genetic isolate) female individuals	Up to 12,813 European ancestry female individuals, 910 Val Borbera (founder/genetic isolate) female individuals, 348 Orcadian (founder/genetic isolate) female individuals, 338 Friuli Venezia Giulia (founder/genetic isolate) female individuals, 322 Carlantino (founder/genetic/isolate) female individuals	6q22.32	C6orf173, TRMT11	rs1361108-T	0.46	2E-8		2.1	[1.32-2.88] week decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1552	chr6	126768502	126768503	rs72979977	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6q22.32	NR	rs72979977-?	NR	2E-38				Affymetrix [~ 8270000] (imputed)	N
1552	chr6	126781433	126781434	rs4895808	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	6q22.32	CENPW, NCOA7	rs4895808-C	0.54	5E-13		0.03	[0.02-0.04] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
1552	chr6	126788106	126788107	rs1844594	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	6q22.32		rs1844594-?	NR	2E-26				NR [~ 8900000] (imputed)	N
1552	chr6	126790484	126790485	rs76850604	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6q22.32	NR	rs76850604-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1552	chr6	126792094	126792095	rs11759026	32963231	Hofer E	2020-09-22	Nat Commun	Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.	Cortical volume	22,824 European and African American ancestry individuals	NA	6q22.32	MIR588	rs11759026-?		6E-19	(Global)			Affymetrix, Illumina [NR] (imputed)	N
1552	chr6	126792094	126792095	rs11759026	32963231	Hofer E	2020-09-22	Nat Commun	Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.	Cortical surface area	18,617 European and African American ancestry individuals	22,363 European ancestry individuals	6q22.32	MIR588	rs11759026-?		4E-34	(Global)			Affymetrix, Illumina [NR] (imputed)	N
1552	chr6	126792094	126792095	rs11759026	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	6q22.32	NR	rs11759026-G	0.2307	7E-19		0.0646	[0.05-0.079] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1552	chr6	126792094	126792095	rs11759026	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	6q22.32	NR	rs11759026-G	0.3164	1E-24		0.0585	[0.047-0.07] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1552	chr6	126792094	126792095	rs11759026	32198502	Shin J	2020-03-20	Cereb Cortex	Global and Regional Development of the Human Cerebral Cortex: Molecular Architecture and Occupational Aptitudes.	Cortical surface area (global PC1)	23,784 European ancestry individuals	19,512 European ancestry individuals, 6,234 individuals	6q22.32	MIR588	rs11759026-?	NR	4E-20		1.5906	[1.25-1.93] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1552	chr6	126792094	126792095	rs11759026	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	6q22.32	NR	rs11759026-A	0.7628	1E-34	(total)	1142.2577	[959.79-1324.72] unit decrease	Affymetrix, Illumina [NR]	N
1552	chr6	126792094	126792095	rs11759026	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	6q22.32	NR	rs11759026-?	NR	4E-9	(left lateral orbitofrontal)			NR [9227495] (imputed)	N
1552	chr6	126792094	126792095	rs11759026	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	6q22.32	NR	rs11759026-?	NR	1E-16	(total brain volume)			NR [9227495] (imputed)	N
1552	chr6	126792094	126792095	rs11759026	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 29,0641 European ancestry controls	NA	6q22.32	RP11-73O6.4	rs11759026-G	0.226203	9E-11		0.09031687	[0.063-0.118] unit increase	Affymetrix [7288503] (imputed)	N
1552	chr6	126792094	126792095	rs11759026	30818988	Klein M	2019-03-01	Am J Psychiatry	Genetic Markers of ADHD-Related Variations in Intracranial Volume.	Intracranial volume	24,024 European ancestry individuals	NA	6q22.32	NR	rs11759026-A	NR	1E-18		8.793	NR z score decrease	NR [9186920] (imputed)	N
1552	chr6	126792094	126792095	rs11759026	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Type 2 diabetes	approximately 459,000 European ancestry individuals	NA	6q22.32		rs11759026-?	NR	7E-12				NR [~ 8900000] (imputed)	N
1552	chr6	126792094	126792095	rs11759026	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	6q22.32		rs11759026-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1552	chr6	126792094	126792095	rs11759026	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	6q22.32	CENPW	rs11759026-G	0.2321	2E-18		1.07	[1.05-1.08]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1552	chr6	126792094	126792095	rs11759026	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FVC)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		6q22.32	CENPW, RSPO3	rs11759026-A	0.76	2E-6	(EA)	19.5	[11.44-27.56] unit decrease	Affymetrix, Illumina [10900000] (imputed)	N
1552	chr6	126792094	126792095	rs11759026	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FVC)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		6q22.32	CENPW, RSPO3	rs11759026-A	0.72	4E-9		20.2	[13.46-26.94] ml decrease	Affymetrix, Illumina [10900000] (imputed)	N
1552	chr6	126792094	126792095	rs11759026	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6q22.32		rs11759026-A	0.7669	4E-9	(conditional-joint)	0.0098	[0.0065-0.0131] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1552	chr6	126792094	126792095	rs11759026	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	6q22.32	NR	rs11759026-A	0.229136	4E-8		5.51	z score increase	NR [10847151] (imputed)	N
1552	chr6	126792094	126792095	rs11759026	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	6q22.32	CENPW	rs11759026-A	0.77086	1E-6		4.876	z score increase	Illumina [18485882] (imputed)	N
1552	chr6	126797110	126797111	rs9401883	34021356	Sarnowski C	2021-05-22	Hum Reprod	Large trans-ethnic meta-analysis identifies AKR1C4 as a novel gene associated with age at menarche.	Menarche (age at onset)	19,028 African ancestry individuals, 3,205 South Asian ancestry individuals, 2,095 East Asian ancestry individuals, 10,661 Hispanic/Latina individuals, 3,557 individuals	NA	6q22.32	NR	rs9401883-A	0.56	2E-8		0.08	[0.06-0.1] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1552	chr6	126801143	126801144	rs1159619	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling nervous	373,121 European ancestry individuals	NA	6q22.32	NR	rs1159619-A	0.456252	1E-8		5.69	z score decrease	NR [10847151] (imputed)	N
1552	chr6	126802597	126802598	rs7753563	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	6q22.32		rs7753563-?	NR	9E-19				NR [~ 8900000] (imputed)	N
1552	chr6	126811927	126811928	rs2326451	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	6q22.32		rs2326451-T	0.452018	4E-9		0.01300267	[0.0087-0.0173] unit decrease	Affymetrix [93095623] (imputed)	N
1552	chr6	126811927	126811928	rs2326451	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	6q22.32	intergenic	rs2326451-T	0.4528	1E-13		0.02635187	[0.019-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1552	chr6	126812608	126812609	rs10457480	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6q22.32	MIR588	rs10457480-G	NR	1E-16		0.0253394	[0.019-0.031] unit increase	Affymetrix [319769] (imputed)	N
1552	chr6	126812608	126812609	rs10457480	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6q22.32	MIR588	rs10457480-G	NR	3E-15		0.0241621	[0.018-0.03] unit increase	Affymetrix [319769] (imputed)	N
1552	chr6	126812608	126812609	rs10457480	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6q22.32	MIR588	rs10457480-G	NR	2E-14		0.0234201	[0.017-0.029] unit decrease	Affymetrix [321016] (imputed)	N
1552	chr6	126812608	126812609	rs10457480	31409800	Pazoki R	2019-08-13	Nat Commun	GWAS for urinary sodium and potassium excretion highlights pathways shared with cardiovascular traits.	Urinary sodium excretion	446,237 European ancestry individuals	7,612 African ancestry individuals, 10,095 South Asian ancestry individuals	6q22.32	MIR588	rs10457480-C	0.697788	7E-10	(EA)	0.0083187	[0.0057-0.011] unit decrease	Affymetrix [~ 8800000] (imputed)	N
1552	chr6	126813383	126813384	rs72982003	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6q22.32	NR	rs72982003-?	NR	2E-13				Affymetrix [~ 8270000] (imputed)	N
1552	chr6	126813720	126813721	rs10457481	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6q22.32	MIR588	rs10457481-A	NR	7E-11		0.020195	[0.014-0.026] unit increase	Affymetrix [321169] (imputed)	N
1552	chr6	126814932	126814933	rs143474978	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6q22.32	MIR588	rs143474978-C	NR	3E-23		0.0887359	[0.071-0.106] unit increase	Affymetrix [321114] (imputed)	N
1552	chr6	126814932	126814933	rs143474978	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6q22.32	MIR588	rs143474978-C	NR	7E-21		0.083899	[0.066-0.101] unit increase	Affymetrix [321169] (imputed)	N
1552	chr6	126814932	126814933	rs143474978	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6q22.32	NR	rs143474978-?	NR	1E-55				Affymetrix [~ 8270000] (imputed)	N
1552	chr6	126814932	126814933	rs143474978	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6q22.32	NR	rs143474978-?	NR	2E-21				Affymetrix [~ 8270000] (imputed)	N
1552	chr6	126819698	126819699	rs4418209	24945404	Kemp JP	2014-06-19	PLoS Genet	Phenotypic dissection of bone mineral density reveals skeletal site specificity and facilitates the identification of novel loci in the genetic regulation of bone mass attainment.	Bone mineral density (paediatric, skull)	7,976 European ancestry children, 289 Surinamese ancestry children, 300 Turkish ancestry children, 232 Moroccan ancestry children, 588 children	NA	6q22.32	CENPW, RSPO3	rs4418209-T	0.53	1E-6		0.07	[0.031-0.109] unit increase	Illumina [~ 2500000] (imputed)	N
1552	chr6	126820560	126820561	rs2130604	24945404	Kemp JP	2014-06-19	PLoS Genet	Phenotypic dissection of bone mineral density reveals skeletal site specificity and facilitates the identification of novel loci in the genetic regulation of bone mass attainment.	Bone mineral density (paediatric, skull)	7,976 European ancestry children, 289 Surinamese ancestry children, 300 Turkish ancestry children, 232 Moroccan ancestry children, 588 children	NA	6q22.32	CENPW, RSPO3	rs2130604-T	NR	4E-11	(EA)	0.1291	[0.091-0.167] unit increase	Illumina [~ 2500000] (imputed)	N
1552	chr6	126820560	126820561	rs2130604	24945404	Kemp JP	2014-06-19	PLoS Genet	Phenotypic dissection of bone mineral density reveals skeletal site specificity and facilitates the identification of novel loci in the genetic regulation of bone mass attainment.	Bone mineral density (paediatric, skull)	7,976 European ancestry children, 289 Surinamese ancestry children, 300 Turkish ancestry children, 232 Moroccan ancestry children, 588 children	NA	6q22.32	CENPW, RSPO3	rs2130604-T	0.24	3E-11		0.112	[0.079-0.145] unit increase	Illumina [~ 2500000] (imputed)	N
1552	chr6	126825885	126825892	rs72422730	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Monobrow	69,284 European ancestry individuals	NA	6q22.32	CENPW, RSPO3	rs72422730-?	NR	6E-21		0.035	[0.042-0.027] unit decrease	Illumina [12039491] (imputed)	N
1552	chr6	126835654	126835655	rs1490388	18391951	Gudbjartsson DF	2008-04-06	Nat Genet	Many sequence variants affecting diversity of adult human height.	Height	30,968 European ancestry individuals	8,541 European ancestry individuals	6q22.32	C6orf173	rs1490388-T	0.42	6E-7		4.8	[2.84-6.76] % s.d. increase	Affymetrix, Illumina [up to 304226]	N
1552	chr6	126837662	126837663	rs1907067	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	6q22.32		rs1907067-?	NR	2E-42				NR [~ 8900000] (imputed)	N
1552	chr6	126838604	126838605	rs1602278	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6q22.32	NR	rs1602278-?	NR	2E-6		4.792	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1552	chr6	126844253	126844254	rs118009556	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	6q22.32	MIR588	rs118009556-G	0.966286	2E-9		0.0299513	[0.02-0.04] unit decrease	NR [13737936] (imputed)	N
1552	chr6	126845379	126845380	rs1337736	31396565	van der Lee SJ	2019-08-02	Commun Biol	A genome-wide association study identifies genetic loci associated with specific lobar brain volumes.	Occipital lobe volume	15,269 European ancestry individuals, 405 African American individuals, 211 Chinese ancestry individuals, 131 Malay ancestry individuals	NA	6q22.32	CENPW, RSPO3	rs1337736-A	0.232	4E-8		0.637	[0.41-0.86] cm3 decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1552	chr6	126845379	126845380	rs1337736	31396565	van der Lee SJ	2019-08-02	Commun Biol	A genome-wide association study identifies genetic loci associated with specific lobar brain volumes.	Occipital lobe volume	15,269 European ancestry individuals	8,789 European ancestry individuals	6q22.32	CENPW	rs1337736-A	0.23	8E-8		0.64	[0.4-0.88] cm3 decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1552	chr6	126851159	126851160	rs1490384	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	6q22.32		rs1490384-T	NR	7E-13		0.0164	[0.012-0.021] unit decrease	Affymetrix, Illumina [20535842] (imputed)	N
1552	chr6	126851159	126851160	rs1490384	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	6q22.32		rs1490384-T	NR	2E-37		0.0307	[0.026-0.035] unit decrease	Affymetrix, Illumina [20529698] (imputed)	N
1552	chr6	126851159	126851160	rs1490384	33287642	Said MA	2020-12-08	J Am Heart Assoc	Associations of Observational and Genetically Determined Caffeine Intake With Coronary Artery Disease and Diabetes Mellitus.	Caffeine consumption from coffee or tea	362,316 European ancestry individuals	NA	6q22.32	CENPW	rs1490384-C	0.501467	8E-12		0.01587	[0.011-0.02] unit decrease	Affymetrix [19400838] (imputed)	N
1552	chr6	126851159	126851160	rs1490384	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	6q22.32		rs1490384-T	0.499896	5E-11		0.014512595	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
1552	chr6	126851159	126851160	rs1490384	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q22.32	NR	rs1490384-T	0.560419	6E-12				Affymetrix, Illumina [23114412] (imputed)	N
1552	chr6	126851159	126851160	rs1490384	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	6q22.32	NR	rs1490384-T	0.501387	2E-14		0.014654	[0.011-0.018] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
1552	chr6	126851159	126851160	rs1490384	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	6q22.32	CENPW	rs1490384-?		1E-38				NR [7428630] (imputed)	N
1552	chr6	126851159	126851160	rs1490384	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	6q22.32	NR	rs1490384-C	0.501916	9E-45		0.0288618	[0.025-0.033] unit increase	NR [NR]	N
1552	chr6	126851159	126851160	rs1490384	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	6q22.32	NR	rs1490384-?	NR	2E-15	(total brain volume)			NR [9227495] (imputed)	N
1552	chr6	126851159	126851160	rs1490384	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6q22.32		rs1490384-?	NR	3E-166				NR [~ 8900000] (imputed)	N
1552	chr6	126851159	126851160	rs1490384	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	up to 92,771 European ancestry males, up to 113,387 European ancestry females	NA	6q22.32	C6orf173	rs1490384-T	0.51	3E-12		0.025	[0.017-0.033] unit decrease	Affymetrix, Illumina, Perlegen [2437193] (imputed)	N
1552	chr6	126851159	126851160	rs1490384	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	148,164 European ancestry individuals	NA	6q22.32	CENPW	rs1490384-T	0.51	5E-12	(BMI-adjusted)	0.026	[0.018-0.034] unit decrease	Affymetrix, Illumina, Perlegen [10019203] (imputed)	N
1552	chr6	126851159	126851160	rs1490384	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	Height	19,965 British ancestry individuals from 6863 families.	NA	6q22.32	intergenic	rs1490384-T	0.4851	7E-10		0.004162694	[0.0028-0.0055] m increase	Illumina [24111857] (imputed)	N
1552	chr6	126851159	126851160	rs1490384	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Menarche (age at onset)	76,831 European ancestry individuals	NA	6q22.32	CENPW, RSPO3	rs1490384-?	NR	1E-10		0.028	[0.036-0.019] unit decrease	Illumina [12039492]	N
1552	chr6	126851159	126851160	rs1490384	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	6q22.32	C6orf173	rs1490384-T	0.49	1E-16		1.18	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
1552	chr6	126851159	126851160	rs1490384	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	6q22.32	C6orf173	rs1490384-T	0.5	4E-21		0.034	[NR] unit increase	Affymetrix, Illumina [2834208] (imputed)	N
1552	chr6	126865883	126865884	rs6925689	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	6q22.32	CENPW	rs6925689-T	0.494134	6E-9		0.014966	[0.0099-0.02] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1552	chr6	126865883	126865884	rs6925689	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	6q22.32	Intergenic	rs6925689-T	0.4866	5E-16	(MTAG)	0.0145	[0.011-0.018] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1552	chr6	126865883	126865884	rs6925689	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	6q22.32	Intergenic	rs6925689-T	0.4866	2E-12		0.0137	[0.0098-0.0176] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1552	chr6	126866132	126866133	rs1155939	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	6q22.32		rs1155939-A	NR	4E-8		0.0127	[0.0082-0.0172] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
1552	chr6	126866132	126866133	rs1155939	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	6q22.32	C6orf173	rs1155939-A	0.499	1E-45		0.042	[0.036-0.048] unit increase	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
1552	chr6	126868566	126868567	rs58321169	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	6q22.32	RNU6-200P	rs58321169-T	NR	4E-11		0.0219148	[0.015-0.028] unit decrease	Affymetrix [321788] (imputed)	N
1552	chr6	126868566	126868567	rs58321169	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (min-P)	26,502 European ancestry individuals	NA	6q22.32	TAGLN2, IGSF9	rs58321169-?		1E-14				NR [7428630] (imputed)	N
1552	chr6	126868566	126868567	rs58321169	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	6q22.32	ANKRD44, SF3B1, COQ10B, HSPD1, HSPE1, HSPE1-MOB4, MOB4, RFTN2, AC011997.1, MARS2, BOLL, PLCL1	rs58321169-?		2E-37				NR [7428630] (imputed)	N
1552	chr6	126868566	126868567	rs58321169	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (min-P)	26,502 European ancestry individuals	NA	6q22.32	CDC42EP3	rs58321169-?		6E-14				NR [7428630] (imputed)	N
1552	chr6	126868566	126868567	rs58321169	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	6q22.32	NR	rs58321169-T	0.2771	3E-9	(Parahippocampal)	2.9994287	[2.01-3.99] unit decrease	Affymetrix, Illumina [NR]	N
1552	chr6	126868566	126868567	rs58321169	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	6q22.32	NR	rs58321169-C	0.733256	2E-25		0.00990083	[0.008-0.0118] unit increase	Affymetrix [16582909] (imputed)	N
1552	chr6	126868566	126868567	rs58321169	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	6q22.32	NR	rs58321169-C	0.732326	6E-14		0.0101093	[0.0074-0.0129] unit increase	Affymetrix [16585854] (imputed)	N
1552	chr6	126868566	126868567	rs58321169	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	6q22.32	NR	rs58321169-C	0.734219	1E-10		0.00889266	[0.0063-0.0115] unit increase	Affymetrix [16582621] (imputed)	N
1552	chr6	126868566	126868567	rs58321169	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	6q22.32	NR	rs58321169-C	0.733256	3E-14		0.00833493	[0.0063-0.0104] unit increase	Affymetrix [16582965] (imputed)	N
1552	chr6	126868566	126868567	rs58321169	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	6q22.32	NR	rs58321169-C	0.732326	2E-7		0.00821894	[0.0051-0.0114] unit increase	Affymetrix [16585866] (imputed)	N
1552	chr6	126868566	126868567	rs58321169	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	6q22.32	NR	rs58321169-C	0.734219	2E-7		0.00781199	[0.0051-0.0106] unit increase	Affymetrix [16582614] (imputed)	N
1552	chr6	126871364	126871365	rs66488607	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6q22.32	RNU6-200P	rs66488607-CA	0.499	4E-17		0.0542	[0.041-0.067] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1552	chr6	126873422	126873423	rs9388498	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Kidney volume	32,860 European ancestry individuals	NA	6q22.32	CENPW	rs9388498-?	NR	1E-14		0.0639	NR L increase	Affymetrix [9390170] (imputed)	N
1552	chr6	126873422	126873423	rs9388498	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6q22.32	NR	rs9388498-?	NR	2E-12				Affymetrix [~ 8270000] (imputed)	N
1552	chr6	126874090	126874091	rs9375447	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	6q22.32		rs9375447-G	NR	2E-14		0.0181	[0.013-0.023] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
1552	chr6	126874090	126874091	rs9375447	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6q22.32	NR	rs9375447-G	0.492609	1E-10		0.014099469	[0.0098-0.0184] unit decrease	Affymetrix [93095623] (imputed)	N
1552	chr6	126874090	126874091	rs9375447	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q22.32	NR	rs9375447-G	0.593063	4E-12				Affymetrix, Illumina [24649327] (imputed)	N
1552	chr6	126874090	126874091	rs9375447	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	6q22.32	NR	rs9375447-G	0.494601	6E-14		0.013767	[0.01-0.017] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1552	chr6	126874090	126874091	rs9375447	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	6q22.32		rs9375447-?	NR	8E-19				NR [~ 8900000] (imputed)	N
1552	chr6	126875371	126875371	rs5879807	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	6q22.32		rs5879807-CAT	NR	7E-15		0.019	[0.014-0.024] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
1553	chr6	126879949	126879950	rs573432473	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6q22.32	NR	rs573432473-?	NR	2E-12				Affymetrix [~ 8270000] (imputed)	N
1553	chr6	126899269	126899269	rs34987743	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6q22.32	intergenic	rs34987743-AAGAG		1E-10		0.014	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
1553	chr6	126920829	126920830	rs117580770	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	6q22.32	NR	rs117580770-T	NR	2E-12		0.0367	[0.027-0.047] unit increase	Affymetrix [9000000] (imputed)	N
1553	chr6	126932355	126932356	rs139717191	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	6q22.32	VIMP1	rs139717191-A	NR	2E-25		0.144545	[0.12-0.17] unit decrease	Affymetrix [321788] (imputed)	N
1553	chr6	126932355	126932356	rs139717191	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6q22.32	VIMP1	rs139717191-A	NR	2E-17		0.11328	[0.087-0.139] unit decrease	Affymetrix [321016] (imputed)	N
1553	chr6	126964509	126964510	rs4273712	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	8,072 individuals	NA	6q22.32		rs4273712-G	0.28	3E-11				NR [13131314] (imputed)	N
1553	chr6	126964509	126964510	rs4273712	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	5,199 individuals	NA	6q22.32		rs4273712-G	0.28	3E-13				Affymetrix [9061022] (imputed)	N
1553	chr6	126964509	126964510	rs4273712	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	6q22.32		rs4273712-G	0.28	3E-102		21.47	z score increase	Affymetrix [9061022] (imputed)	N
1553	chr6	126964509	126964510	rs4273712	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	6q22.32		rs4273712-G	0.466011879	1E-9		0.055515487	[0.038-0.073] unit increase	Illumina [13429769] (imputed)	N
1553	chr6	126964509	126964510	rs4273712	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	6q22.32		rs4273712-G	NR	3E-18		0.0577	[0.045-0.071] unit increase	Affymetrix, Illumina [25845091] (imputed)	N
1553	chr6	126964509	126964510	rs4273712	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	6q22.32	NR	rs4273712-G	0.2655	1E-17				NR [9056863] (imputed)	N
1553	chr6	126964509	126964510	rs4273712	32963231	Hofer E	2020-09-22	Nat Commun	Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.	Cortical surface area	18,617 European and African American ancestry individuals	22,363 European ancestry individuals	6q22.32	RSPO3	rs4273712-?		2E-12	(Middle temporal)			Affymetrix, Illumina [NR] (imputed)	N
1553	chr6	126964509	126964510	rs4273712	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	6q22.32	CENPW	rs4273712-G	0.469	3E-12		1.05	[1.03-1.06]	Affymetrix, Illumina [11800000] (imputed)	N
1553	chr6	126964509	126964510	rs4273712	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	6q22.32	NR	rs4273712-A	0.7238	6E-23	(Caudal Middle Frontal)	18.053783	[14.47-21.64] unit decrease	Affymetrix, Illumina [NR]	N
1553	chr6	126964509	126964510	rs4273712	25607358	Hibar DP	2015-01-21	Nature	Common genetic variants influence human subcortical brain structures.	Subcortical brain region volumes	up to 13,171 European ancestry individuals	up to 15,130 European ancestry individuals, 545 Japanese ancestry individuals, 736 Mexican American individuals	6q22.32	RNF146, CENPW, RSPO3	rs4273712-?	NR	9E-6	(Intracranial volume, EA)	9460.76	[5279.98-13641.54] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1553	chr6	126964509	126964510	rs4273712	24509480	Mahajan A	2014-02-09	Nat Genet	Genome-wide trans-ancestry meta-analysis provides insight into the genetic architecture of type 2 diabetes susceptibility.	Type 2 diabetes	12,171 European ancestry cases, 56,862 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls	21,491 European ancestry cases, 55,647 European ancestry controls	6q22.32	C6orf173	rs4273712-G		3E-6		1.05	[1.03-1.07]	Affymetrix, Illumina [2500000] (imputed)	N
1553	chr6	126964509	126964510	rs4273712	22504418	Ikram MA	2012-04-15	Nat Genet	Common variants at 6q22 and 17q21 are associated with intracranial volume.	Intracranial volume	8,175 European ancestry individuals	1,752 European ancestry individuals	6q22.32	RNF146, CENPW, RSPO3	rs4273712-G	0.27	2E-13		12.5	[NR] ml increase	Affymetrix, Illumina [2229753] (imputed)	N
1553	chr6	126964939	126964940	rs12189961	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6q22.32	PRELID1P1	rs12189961-T	NR	4E-30		0.086346	[0.071-0.101] unit increase	Affymetrix [319769] (imputed)	N
1553	chr6	126964939	126964940	rs12189961	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6q22.32	PRELID1P1	rs12189961-T	NR	4E-31		0.0880155	[0.073-0.103] unit increase	Affymetrix [319769] (imputed)	N
1553	chr6	126964939	126964940	rs12189961	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	6q22.32	PRELID1P1	rs12189961-T	NR	9E-20		0.0717682	[0.056-0.087] unit decrease	Affymetrix [321788] (imputed)	N
1553	chr6	126964939	126964940	rs12189961	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6q22.32	PRELID1P1	rs12189961-T	NR	1E-9		0.0458494	[0.031-0.061] unit decrease	Affymetrix [321016] (imputed)	N
1553	chr6	126966307	126966308	rs4549631	30012220	Prins BP	2018-07-17	Genome Biol	Exome-chip meta-analysis identifies novel loci associated with cardiac conduction, including ADAMTS6.	QRS duration	up to 77,898 European ancestry individuals, up to 7,695 African American individuals	up to 111,874 European ancestry individuals	6q22.32	intergenic	rs4549631-C	0.482235	1E-15		0.260483	[0.2-0.32] ms increase	Illumina [162199]	N
1553	chr6	126966307	126966308	rs4549631	30012220	Prins BP	2018-07-17	Genome Biol	Exome-chip meta-analysis identifies novel loci associated with cardiac conduction, including ADAMTS6.	QRS duration	77,898 European ancestry individuals	NA	6q22.32	intergenic	rs4549631-C	0.494402341186958	8E-11		0.29401422	[0.21-0.38] ms increase	Illumina [213295]	N
1553	chr6	126966307	126966308	rs4549631	18391952	Weedon MN	2008-04-06	Nat Genet	Genome-wide association analysis identifies 20 loci that influence adult height.	Height	13,665 European ancestry individuals	16,482 European ancestry individuals	6q22.32	LOC387103	rs4549631-C	0.5	5E-13		0.06	[0.03-0.08] s.d. increase (males)	Affymetrix [402951]	N
1553	chr6	126986995	126986996	rs1262476	31413261	Deelen J	2019-08-14	Nat Commun	A meta-analysis of genome-wide association studies identifies multiple longevity genes.	Longevity (age >90th survival percentile)	11,262 European ancestry cases, 2,178 East Asian ancestry cases, 177 African American cases, 25,483 European ancestry controls, 2,299 East Asian ancestry controls, 211 African American controls.	NA	6q22.32	intergenic	rs1262476-A	0.24	1E-6		1.12	1.07-1.17	Affymetrix, Illumina [up to 10786384] (imputed)	N
1553	chr6	126986995	126986996	rs1262476	24945404	Kemp JP	2014-06-19	PLoS Genet	Phenotypic dissection of bone mineral density reveals skeletal site specificity and facilitates the identification of novel loci in the genetic regulation of bone mass attainment.	Bone mineral density (paediatric, upper limb)	8,007 European ancestry children, 289 Surinamese ancestry children, 300 Turkish ancestry children, 232 Moroccan ancestry children, 588 children	NA	6q22.32	CENPW, RSPO3	rs1262476-G	NR	4E-8	(EA)	0.1045	[0.067-0.142] unit increase	Illumina [~ 2500000] (imputed)	N
1553	chr6	126986995	126986996	rs1262476	24945404	Kemp JP	2014-06-19	PLoS Genet	Phenotypic dissection of bone mineral density reveals skeletal site specificity and facilitates the identification of novel loci in the genetic regulation of bone mass attainment.	Bone mineral density (paediatric, upper limb)	8,007 European ancestry children, 289 Surinamese ancestry children, 300 Turkish ancestry children, 232 Moroccan ancestry children, 588 children	NA	6q22.32	CENPW, RSPO3	rs1262476-G	0.77	3E-9		0.104	[0.069-0.139] unit increase	Illumina [~ 2500000] (imputed)	N
1553	chr6	126987213	126987213	rs144578168	28272467	Heilmann-Heimbach S	2017-03-08	Nat Commun	Meta-analysis identifies novel risk loci and yields systematic insights into the biology of male-pattern baldness.	Male-pattern baldness	10,846 European ancestry cases, 11,672 European ancestry controls	NA	6q22.32		rs144578168-AAAAT	0.49	4E-13		0.15	[0.11-0.19] unit decrease	Affymetrix, Illumina [8004650] (imputed)	N
1553	chr6	126990391	126990392	rs6918725	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	6q22.32	MIR588	rs6918725-T	0.4813	5E-19		0.0211	[0.016-0.026] unit decrease	Affymetrix [19819130] (imputed)	N
1553	chr6	126990391	126990392	rs6918725	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	6q22.32	MIR588	rs6918725-T	0.4813	1E-10		0.0151	[0.011-0.02] unit decrease	Affymetrix [19819130] (imputed)	N
1553	chr6	126990391	126990392	rs6918725	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	6q22.32		rs6918725-?	NR	5E-10				NR [~ 8900000] (imputed)	N
1553	chr6	126990391	126990392	rs6918725	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	Height	19,965 British ancestry individuals from 6863 families.	NA	6q22.32	NR	rs6918725-G	0.485225	7E-10		0.00418718	[0.0029-0.0055] m increase	Illumina [24111857] (imputed)	N
1553	chr6	126990391	126990392	rs6918725	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Life satisfaction	166,205 European ancestry individuals	NA	6q22.32	NR	rs6918725-T	0.477	2E-7		0.018	[0.011-0.025] unit decrease	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
1553	chr6	126995043	126995044	rs1262478	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	6q22.32	NR	rs1262478-A	0.1796	1E-10	(Lateral Orbitofrontal)	11.397976	[7.91-14.88] unit decrease	Affymetrix, Illumina [NR]	N
1553	chr6	127000880	127000881	rs74580701	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	6q22.32	NR	rs74580701-G	NR	4E-21		0.0561	[0.044-0.068] unit increase	Affymetrix [9000000] (imputed)	N
1553	chr6	127000880	127000881	rs74580701	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	6q22.32	NR	rs74580701-G	NR	1E-10		0.0383	[0.027-0.05] unit decrease	Affymetrix [9000000] (imputed)	N
1553	chr6	127000880	127000881	rs74580701	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	6q22.32	NR	rs74580701-A	0.9593	7E-11	(total)	1614.3707	[1129.52-2099.23] unit increase	Affymetrix, Illumina [NR]	N
1553	chr6	127001533	127001534	rs3850234	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6q22.32	NR	rs3850234-?	NR	1E-6		4.819	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1554	chr6	127011265	127011266	rs111770456	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	6q22.32	NR	rs111770456-C	NR	7E-11		0.0475	[0.033-0.062] unit decrease	Affymetrix [9000000] (imputed)	N
1554	chr6	127014861	127014862	rs9375452	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs9375452-C	0.773961	3E-9		0.0621306	[0.041-0.083] increase	Affymetrix [11014269] (imputed)	N
1554	chr6	127020868	127020869	rs139878170	27106561	Cornelis MC	2016-04-23	Obesity (Silver Spring)	A genome-wide investigation of food addiction.	Food addiction	up to 9,314 European ancestry individuals	NA	6q22.32	CENPW, RSPO3, RNF146	rs139878170-A	0.02	7E-9	(mYscore, continuous)	0.4	unit increase	Affymetrix, Illumina [~ 31000000] (imputed)	N
1554	chr6	127020868	127020869	rs139878170	27106561	Cornelis MC	2016-04-23	Obesity (Silver Spring)	A genome-wide investigation of food addiction.	Food addiction	up to 9,314 European ancestry individuals	NA	6q22.32	CENPW, RSPO3, RNF146	rs139878170-A	0.02	6E-6	(Yclinical)	2.65		Affymetrix, Illumina [~ 31000000] (imputed)	N
1554	chr6	127025660	127025661	rs13212044	34239500	Livingstone KM	2021-06-22	Front Endocrinol (Lausanne)	Discovery Genome-Wide Association Study of Body Composition in 4,386 Adults From the UK Biobank's Pilot Imaging Enhancement Study.	Trunk lean mass	2,294 White British ancestry female individuals, 2,109 White British ancestry male individuals	NA	6q22.32		rs13212044-T	NR	4E-8		353.86	g decrease	NR [6137607] (imputed)	N
1554	chr6	127025660	127025661	rs13212044	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	6q22.32	NR	rs13212044-T	0.2501	2E-13	(total)	676.50757	[496.77-856.25] unit decrease	Affymetrix, Illumina [NR]	N
1554	chr6	127025660	127025661	rs13212044	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	6q22.32	NR	rs13212044-T	NR	1E-8		5.666	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1554	chr6	127025772	127025773	rs188964420	29213071	Mendez-Giraldez R	2017-12-06	Sci Rep	GWAS of the electrocardiographic QT interval in Hispanics/Latinos generalizes previously identified loci and identifies population-specific signals.	QT interval	15,997 Hispanic/Latino individuals	NA	6q22.32	CENPW	rs188964420-T	0.99	2E-6		12.33	[7.25-17.41] ms decrease	Affymetrix, Illumina [up to 17586686] (imputed)	N
1554	chr6	127054587	127054588	rs1262557	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		6q22.32	NR	rs1262557-T	NR	3E-18		0.05	NR unit increase	NR [NR] (imputed)	N
1554	chr6	127054587	127054588	rs1262557	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Male-pattern baldness	9,009 European ancestry cases, 8,491 European ancestry controls	NA	6q22.32	CENPW, RSPO3	rs1262557-?	NR	5E-10		1.15	[1.100-1.202]	Illumina [13436641] (imputed)	N
1554	chr6	127066486	127066487	rs753444559	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Liver volume	32,860 European ancestry individuals	NA	6q22.32	RSPO3	rs753444559-?	NR	1E-12		0.0501	NR L decrease	Affymetrix [9390170] (imputed)	N
1554	chr6	127067995	127067996	rs1101557	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6q22.32	intergenic	rs1101557-T		1E-10		0.014	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
1554	chr6	127068982	127068983	rs853974	34006833	Elvsashagen T	2021-05-18	Nat Commun	The genetic architecture of the human thalamus and its overlap with ten common brain disorders.	Thalamus volume	30,114 white British ancestry individuals			RPS4XP9	rs853974-T	0.2583	4E-9		30.5388	[20.35-40.73] unit increase	Affymetrix [8165723] (imputed)	N
1554	chr6	127068982	127068983	rs853974	32963231	Hofer E	2020-09-22	Nat Commun	Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.	Cortical volume	22,824 European and African American ancestry individuals	NA		RSPO3	rs853974-?		5E-11	(Caudal middle frontal)			Affymetrix, Illumina [NR] (imputed)	N
1554	chr6	127068982	127068983	rs853974	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA		RPS4XP9	rs853974-T	0.26241384700306	8E-12		0.0601	[0.043-0.077] unit increase	NR [5035015] (imputed)	N
1554	chr6	127068982	127068983	rs853974	28779025	Alberts R	2017-08-04	Gut	Genetic association analysis identifies variants associated with disease progression in primary sclerosing cholangitis.	Liver transplant-free survival in primary sclerosing cholangitis (time to event)	874 European ancestry liver transplantation cases , 2,444 European ancestry liver transplant-free cases	NA		CENPW, RSPO3	rs853974-A	NR	6E-9				Illumina [130422]	N
1554	chr6	127080699	127080700	rs1015446	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	6q22.32	NR	rs1015446-A	0.503524	9E-23		0.067083	[0.054-0.08] unit decrease	Affymetrix [17914406] (imputed)	N
1554	chr6	127083940	127083941	rs9385403	32198502	Shin J	2020-03-20	Cereb Cortex	Global and Regional Development of the Human Cerebral Cortex: Molecular Architecture and Occupational Aptitudes.	Cortical surface area (visual PC2)	23,784 European ancestry individuals	19,512 European ancestry individuals, 6,234 individuals	6q22.32	RPS4XP9	rs9385403-?	NR	4E-15	(EA)	0.1216	[0.091-0.152] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1554	chr6	127088302	127088303	rs72971190	35079123	Chambers T	2022-01-25	Mol Psychiatry	Genetic common variants associated with cerebellar volume and their overlap with mental disorders: a study on 33,265 individuals from the UK-Biobank.	Total cerebellar volume (excluding Crus I vermis)	33,265 European ancestry individuals	NA	6q22.32		rs72971190-A	NR	1E-11		0.0373	[0.027-0.048] unit decrease	Affymetrix [6193476] (imputed)	N
1554	chr6	127089400	127089401	rs2223739	32963231	Hofer E	2020-09-22	Nat Commun	Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.	Cortical volume	22,824 European and African American ancestry individuals	NA	6q22.32	RSPO3	rs2223739-?		2E-10	(Lingual)			Affymetrix, Illumina [NR] (imputed)	N
1554	chr6	127096180	127096181	rs9401907	32963231	Hofer E	2020-09-22	Nat Commun	Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.	Cortical volume	22,824 European and African American ancestry individuals	NA	6q22.32	RSPO3	rs9401907-?		2E-10	(Pericalcarine)			Affymetrix, Illumina [NR] (imputed)	N
1554	chr6	127096180	127096181	rs9401907	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	6q22.32	NR	rs9401907-T	0.7554	9E-18	(Pericalcarine)	10.3295	[7.97-12.69] unit increase	Affymetrix, Illumina [NR]	N
1554	chr6	127096180	127096181	rs9401907	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	6q22.32	NR	rs9401907-T	0.755	1E-15	(Lingual)	16.282728	[12.29-20.28] unit increase	Affymetrix, Illumina [NR]	N
1554	chr6	127096180	127096181	rs9401907	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	6q22.32	NR	rs9401907-T	0.7549	7E-15	(Lateral Occipital)	24.035715	[17.99-30.08] unit increase	Affymetrix, Illumina [NR]	N
1554	chr6	127097774	127097775	rs9398815	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	6q22.32	AK127472	rs9398815-C	0.583	8E-25		0.3614	[0.29-0.43] mmHg decrease	Affymetrix [NR] (imputed)	N
1554	chr6	127097774	127097775	rs9398815	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	6q22.32	AK127472	rs9398815-C	0.5815	2E-8		0.1482	[0.097-0.2] mmHg decrease	Affymetrix [NR] (imputed)	N
1554	chr6	127099067	127099068	rs566528532	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6q22.32	NR	rs566528532-?	NR	4E-14				Affymetrix [~ 8270000] (imputed)	N
1554	chr6	127103784	127103785	rs9388518	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 53)	4,680 European ancestry individuals	3,566 European ancestry individuals	6q22.32		rs9388518-A	0.436385256	4E-21				Illumina [7417619] (imputed)	N
1554	chr6	127107247	127107248	rs12525327	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	6q22.32	NR	rs12525327-?	NR	5E-11	(total brain volume)			NR [9227495] (imputed)	N
1554	chr6	127107655	127107656	rs2179723	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption interaction (2df test)	91,110 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	237,996 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,315 European ancestry non-drinkers, 2,761 African ancestry non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	6q22.32	LOC105377992, MIR588	rs2179723-A	0.57	1E-16	(EA, Hispanic)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1554	chr6	127108919	127108920	rs2021708	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption interaction (2df test)	63,608 European ancestry drinkers, 10,193 African American or Afro-Caribbean heavy drinkers,  2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,494 European ancestry non-drinkers, 11,224 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,002 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,452 Hispanic drinkers, 43,316 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,945 Asian ancestry non-drinkers, 6,925 Hispanic non-drinkers	6q22.32	LOC105377992, MIR588	rs2021708-A	0.55	2E-34	(Asian, EA, Hispanic)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1554	chr6	127110162	127110163	rs35144677	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6q22.32	RPS4XP9	rs35144677-C	NR	1E-10		0.0313099	[0.022-0.041] unit increase	Affymetrix [321016] (imputed)	N
1554	chr6	127110162	127110163	rs35144677	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	6q22.32	NR	rs35144677-C	NR	1E-15		0.0336	[0.025-0.042] unit increase	Affymetrix [9000000] (imputed)	N
1554	chr6	127115248	127115248	rs3054944	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6q22.32	RPS4XP9	rs3054944-C	NR	3E-23		0.0384129	[0.031-0.046] unit increase	Affymetrix [319769] (imputed)	N
1554	chr6	127115248	127115248	rs3054944	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6q22.32	RPS4XP9	rs3054944-C	NR	5E-25		0.0398934	[0.032-0.047] unit increase	Affymetrix [319769] (imputed)	N
1554	chr6	127115248	127115248	rs3054944	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6q22.32	RPS4XP9	rs3054944-C	NR	5E-14		0.0293397	[0.022-0.037] unit increase	Affymetrix [321114] (imputed)	N
1554	chr6	127115248	127115248	rs3054944	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	6q22.32	RPS4XP9	rs3054944-C	NR	7E-26		0.0422733	[0.034-0.05] unit decrease	Affymetrix [321788] (imputed)	N
1554	chr6	127115248	127115248	rs3054944	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	6q22.32	RPS4XP9	rs3054944-C	NR	1E-10		0.0283699	[0.02-0.037] unit decrease	Affymetrix [323858] (imputed)	N
1554	chr6	127115453	127115454	rs13209747	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	6q22.32	RSPO3	rs13209747-T	0.47	4E-6	(Japanese)	0.3509	[0.2-0.5] unit increase	Illumina [6200000] (imputed)	N
1554	chr6	127115453	127115454	rs13209747	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	6q22.32	RSPO3	rs13209747-T	0.4732	1E-8	(Japanese)	0.3051	[0.2-0.41] unit increase	Illumina [6200000] (imputed)	N
1554	chr6	127115453	127115454	rs13209747	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	6q22.32	RSPO3	rs13209747-T	0.4732	6E-9	(Japanese)	0.2829	[0.19-0.38] unit increase	Illumina [6200000] (imputed)	N
1554	chr6	127115453	127115454	rs13209747	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption interaction (2df test)	63,607 European ancestry drinkers, 10,193 African American or Afro-Caribbean drinkers, 2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,492 European ancestry non-drinkers, 11,223 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,058 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	6q22.32	LOC105377991, MIR588	rs13209747-T	0.43	1E-36	(AA, Asian, EA, Hispanic)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1554	chr6	127115453	127115454	rs13209747	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure (cigarette smoking interaction)	80,552 European ancestry individuals, 27,118 African individuals, 13,438 Asian individuals, 8,805 Hispanic individuals	305,513 European ancestry individuals, 7,786 African individuals, 148,932 Asian individuals, 13,533 Hispanic individuals, 4,414 Brazilian individuals	6q22.32	RSPO3	rs13209747-?	NR	2E-31				Affymetrix, Illumina [18800000] (imputed)	N
1554	chr6	127115453	127115454	rs13209747	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure (cigarette smoking interaction)	80,552 European ancestry individuals, 27,118 African individuals, 13,438 Asian individuals, 8,805 Hispanic individuals	305,513 European ancestry individuals, 7,786 African individuals, 148,932 Asian individuals, 13,533 Hispanic individuals, 4,414 Brazilian individuals	6q22.32	RSPO3	rs13209747-?		6E-39				Affymetrix, Illumina [18800000] (imputed)	N
1554	chr6	127115453	127115454	rs13209747	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Systolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	6q22.32	RSPO3	rs13209747-T	0.446	1E-7	(EA, initial)	0.385	[0.24-0.53] unit increase	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
1554	chr6	127115453	127115454	rs13209747	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Diastolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	6q22.32	RSPO3	rs13209747-T	0.446	1E-9	(EA, initial)	0.27	[0.18-0.36] unit increase	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
1554	chr6	127115453	127115454	rs13209747	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	6q22.32	CENPW, RSPO3	rs13209747-C		7E-17		0.322	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1554	chr6	127115453	127115454	rs13209747	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	6q22.32	CENPW, RSPO3	rs13209747-C		2E-6		0.122	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1554	chr6	127115453	127115454	rs13209747	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	6q22.32	CENPW, RSPO3	rs13209747-C		6E-16		0.19	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1554	chr6	127115453	127115454	rs13209747	23972371	Franceschini N	2013-08-20	Am J Hum Genet	Genome-wide association analysis of blood-pressure traits in African-ancestry individuals reveals common associated genes in African and non-African populations.	Blood pressure	28,190 African American individuals, 1,188 Nigerian ancestry individuals	69,395 European ancestry individuals, 5,266 African American individuals, 6,497 African ancestry individuals, 19,601 East Asian ancestry individuals	6q22.32	RSPO3	rs13209747-T	0.19	3E-10	(SBP)	0.85	[0.44-1.26] unit increase	Affymetrix, Illumina [~ 2420000] (imputed)	N
1554	chr6	127115453	127115454	rs13209747	23972371	Franceschini N	2013-08-20	Am J Hum Genet	Genome-wide association analysis of blood-pressure traits in African-ancestry individuals reveals common associated genes in African and non-African populations.	Blood pressure	28,190 African American individuals, 1,188 Nigerian ancestry individuals	69,395 European ancestry individuals, 5,266 African American individuals, 6,497 African ancestry individuals, 19,601 East Asian ancestry individuals	6q22.32	RSPO3	rs13209747-T	0.19	2E-11	(DBP)	0.56	[0.32-0.80] unit increase	Affymetrix, Illumina [~ 2420000] (imputed)	N
1554	chr6	127116474	127116475	rs9388520	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption interaction (2df test)	91,110 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	237,996 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,315 European ancestry non-drinkers, 2,761 African ancestry non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	6q22.32	LOC105377991, MIR588	rs9388520-A	0.43	9E-25	(AA, Asian, EA, Hispanic)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1554	chr6	127118633	127118634	rs113026193	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6q22.32	RPS4XP9	rs113026193-A	NR	3E-46		0.129223	[0.11-0.15] unit increase	Affymetrix [319769] (imputed)	N
1554	chr6	127118633	127118634	rs113026193	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6q22.32	RPS4XP9	rs113026193-A	NR	4E-10		0.0629155	[0.043-0.083] unit increase	Affymetrix [323858] (imputed)	N
1554	chr6	127118633	127118634	rs113026193	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6q22.32	RPS4XP9	rs113026193-A	NR	9E-48		0.131496	[0.11-0.15] unit increase	Affymetrix [319769] (imputed)	N
1554	chr6	127118633	127118634	rs113026193	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6q22.32	RPS4XP9	rs113026193-A	NR	6E-11		0.0656841	[0.046-0.085] unit increase	Affymetrix [127266] (imputed)	N
1554	chr6	127118633	127118634	rs113026193	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	6q22.32	RPS4XP9	rs113026193-A	NR	8E-32		0.110675	[0.092-0.129] unit decrease	Affymetrix [321788] (imputed)	N
1554	chr6	127118633	127118634	rs113026193	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	6q22.32	RPS4XP9	rs113026193-A	NR	2E-12		0.0723617	[0.052-0.093] unit decrease	Affymetrix [323858] (imputed)	N
1554	chr6	127118633	127118634	rs113026193	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6q22.32	RPS4XP9	rs113026193-A	NR	7E-16		0.0730183	[0.055-0.091] unit decrease	Affymetrix [321016] (imputed)	N
1554	chr6	127120708	127120709	rs4563737	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6q22.32	RPS4XP9	rs4563737-C	NR	1E-10		0.0182683	[0.013-0.024] unit increase	Affymetrix [321016] (imputed)	N
1554	chr6	127123251	127123252	rs34616518	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	6q22.33		rs34616518-G	NR	1E-11		0.0123	[0.0088-0.0158] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
1554	chr6	127138102	127138103	rs6908339	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6q22.33	RPS4XP9	rs6908339-G	NR	6E-27		0.0301865	[0.025-0.036] unit decrease	Affymetrix [319769] (imputed)	N
1555	chr6	127144682	127144683	rs13194508	29499414	Pei YF	2018-02-27	Bone	Joint study of two genome-wide association meta-analyses identified 20p12.1 and 20q13.33 for bone mineral density.	Femoral neck bone mineral density	up to 4,692 European ancestry individuals, up to 1,539 Han Chinese ancestry individuals, up to 849 African American individuals, up to 446 Hispanic individuals, 2,882 European ancestry whole-genome sequenced individuals, 3,549 European ancestry whole-exome sequenced individuals, 26,534 European ancestry non-array genotype imputed individuals	NA	6q22.33	RSPO3	rs13194508-T	0.751557	2E-10		0.0528	[0.037-0.069] unit increase	Affymetrix, Illumina [7998108] (imputed)	N
1555	chr6	127146878	127146879	rs1105956	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	6q22.33		rs1105956-A	0.431859339	2E-8		0.046766028	[0.03-0.063] unit increase	Illumina [13134967] (imputed)	N
1555	chr6	127146878	127146879	rs1105956	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6q22.33	RPS4XP9	rs1105956-A	NR	6E-27		0.0302202	[0.025-0.036] unit decrease	Affymetrix [319769] (imputed)	N
1555	chr6	127146878	127146879	rs1105956	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6q22.33	RPS4XP9	rs1105956-A	NR	2E-14		0.0217745	[0.016-0.027] unit decrease	Affymetrix [321169] (imputed)	N
1555	chr6	127146878	127146879	rs1105956	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	6q22.33	LOC105377992, LOC105377989	rs1105956-A	0.428	6E-11	(Japanese)	0.3605	[0.25-0.47] unit increase	Illumina [6200000] (imputed)	N
1555	chr6	127146878	127146879	rs1105956	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Hypertension	22,566 Japanese ancestry cases, 28,226 Japanese ancestry controls	8,809 East Asian ancestry cases, 13,663 East Asian ancestry controls, 105,253 European ancestry individuals	6q22.33	LOC105377992, LOC105377989	rs1105956-A	0.428	4E-6	(Japanese)	0.0641	[0.037-0.091] unit increase	Illumina [6200000] (imputed)	N
1555	chr6	127146878	127146879	rs1105956	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean arterial pressure	136,482 Japanese ancestry individuals	NA	6q22.33	MIR588, RSPO3	rs1105956-?	NR	1E-9		0.02409	[0.016-0.032] unit increase novel	Illumina [6108953] (imputed)	N
1555	chr6	127146878	127146879	rs1105956	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Diastolic blood pressure	136,615 Japanese ancestry individuals	NA	6q22.33	MIR588, RSPO3	rs1105956-?	NR	5E-9		0.02304	[0.015-0.031] unit increase	Illumina [6108953] (imputed)	N
1555	chr6	127147095	127147096	rs62426326	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6q22.33	RPS4XP9	rs62426326-A	0.0359	9E-6		0.0795	[0.044-0.115] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1555	chr6	127147167	127147168	rs1105955	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	6q22.33	NR	rs1105955-A	0.4343	6E-10	(East Asian)	0.397	[0.27-0.52] unit increase	Illumina [6200000] (imputed)	N
1555	chr6	127147167	127147168	rs1105955	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	6q22.33	NR	rs1105955-A	0.4343	3E-12	(East Asian)	0.3155	[0.23-0.4] unit increase	Illumina [6200000] (imputed)	N
1555	chr6	127147167	127147168	rs1105955	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	6q22.33	LOC105377992-LOC105377989	rs1105955-A	0.4343	9E-13	(East Asian)	0.2896	[0.21-0.37] unit increase	Illumina [6200000] (imputed)	N
1555	chr6	127147703	127147704	rs9375459	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls	NA	6q22.33	RP11-73O6.4	rs9375459-T	0.435739	2E-28		0.08765147	[0.072-0.103] unit increase	Affymetrix [7288503] (imputed)	N
1555	chr6	127147703	127147704	rs9375459	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Hypertension	22,566 Japanese ancestry cases, 28,226 Japanese ancestry controls	8,809 East Asian ancestry cases, 13,663 East Asian ancestry controls, 105,253 European ancestry individuals	6q22.33	NR	rs9375459-T	0.4425	2E-8	(East Asian)	0.0626	[0.041-0.084] unit increase	Illumina [6200000] (imputed)	N
1555	chr6	127155710	127155711	rs13210511	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	6q22.33		rs13210511-?	NR	4E-53				NR [~ 8900000] (imputed)	N
1555	chr6	127155710	127155711	rs13210511	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	6q22.33		rs13210511-?	NR	5E-31				NR [~ 8900000] (imputed)	N
1555	chr6	127156463	127156464	rs76397488	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	6q22.33	NR	rs76397488-T	NR	3E-13		0.0298	[0.022-0.038] unit decrease	Affymetrix [9000000] (imputed)	N
1555	chr6	127157437	127157438	rs55901622	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6q22.33	RPS4XP9	rs55901622-G	NR	7E-9		0.0198752	[0.013-0.027] unit decrease	Affymetrix [323123] (imputed)	N
1555	chr6	127159122	127159123	rs9388531	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	6q22.33		rs9388531-A	NR	1E-25		0.0634	[0.051-0.075] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1555	chr6	127159309	127159310	rs9375461	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls, 49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	6q22.33		rs9375461-A	NR	2E-28		0.0643	[0.053-0.076] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1555	chr6	127159309	127159310	rs9375461	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antihypertensives)	6,431 European ancestry cases, 145,949 European ancestry controls, 5,688 East Asian ancestry cases, 173,038 East Asian ancestry controls	NA	6q22.33		rs9375461-A	NR	3E-9		0.0784	[0.053-0.104] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1555	chr6	127159632	127159633	rs7768896	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	6q22.33	RPS4XP9	rs7768896-C	NR	7E-13		0.0210221	[0.015-0.027] unit decrease	Affymetrix [321788] (imputed)	N
1555	chr6	127161216	127161217	rs11752759	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	6q22.33	RP11-73O6.4	rs11752759-C	0.438169	1E-25		0.06355849	[0.052-0.075] unit increase	Affymetrix [7288503] (imputed)	N
1555	chr6	127166887	127166888	rs9375463	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption interaction (2df test)	91,110 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	237,996 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,315 European ancestry non-drinkers, 2,761 African ancestry non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	6q22.33	LOC105377991, RSPO3	rs9375463-A	0.57	1E-15	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1555	chr6	127166887	127166888	rs9375463	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption interaction (2df test)	63,607 European ancestry drinkers, 10,193 African American or Afro-Caribbean drinkers, 2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,492 European ancestry non-drinkers, 11,223 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,058 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	6q22.33	LOC105377991, RSPO3	rs9375463-A	0.57	2E-28	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1555	chr6	127167071	127167072	rs13204965	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	6q22.33	NR	rs13204965-A	0.771	1E-18		0.0619	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
1555	chr6	127167071	127167072	rs13204965	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	6q22.33	NR	rs13204965-A	0.7635	1E-16	(European)	0.0624	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
1555	chr6	127167071	127167072	rs13204965	24945404	Kemp JP	2014-06-19	PLoS Genet	Phenotypic dissection of bone mineral density reveals skeletal site specificity and facilitates the identification of novel loci in the genetic regulation of bone mass attainment.	Bone mineral density (paediatric, total body less head)	8,007 European ancestry children, 289 Surinamese ancestry children, 300 Turkish ancestry children, 232 Moroccan ancestry children, 588 children	NA	6q22.33	CENPW, RSPO3	rs13204965-A	0.76	2E-6		0.09	[NR] unit increase	Illumina [~ 2500000] (imputed)	N
1555	chr6	127167071	127167072	rs13204965	22504420	Estrada K	2012-04-15	Nat Genet	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Femoral neck bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	6q22.33	RSPO3	rs13204965-A	0.76	8E-12		0.04	[NR] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1555	chr6	127167071	127167072	rs13204965	21533022	Duncan EL	2011-04-21	PLoS Genet	Genome-wide association study using extreme truncate selection identifies novel genes affecting bone mineral density and fracture risk.	Bone mineral density	900 European ancestry female individuals with low hip bone mineral density, 1,055 European ancestry female individuals with high hip bone mineral density	20,898 European ancestry female individuals	6q22.33	RSPO3	rs13204965-C	NR	3E-8	(femoral neck)	0.067	[NR] unit decrease	Illumina [2543887] (imputed)	N
1555	chr6	127167174	127167175	rs9398819	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls, 22,356 East Asian ancestry cases, 156,370 East Asian ancestry controls	NA	6q22.33		rs9398819-C	NR	5E-28		0.087	[0.072-0.102] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1555	chr6	127167590	127167591	rs11154370	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6q22.33	RPS4XP9	rs11154370-T	NR	2E-17		0.0628056	[0.048-0.077] unit increase	Affymetrix [321114] (imputed)	N
1555	chr6	127167590	127167591	rs11154370	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6q22.33	RPS4XP9	rs11154370-T	NR	3E-15		0.0584064	[0.044-0.073] unit increase	Affymetrix [321169] (imputed)	N
1555	chr6	127171453	127171454	rs34370526	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	145,505 East Asian ancestry individuals	NA	6q22.33		rs34370526-T	0.450462	2E-8		0.0191141	[0.012-0.026] unit increase	Illumina [13477770] (imputed)	N
1555	chr6	127171453	127171454	rs34370526	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	145,502 East Asian ancestry individuals	NA	6q22.33		rs34370526-T	0.450437	3E-10		0.0221201	[0.015-0.029] unit increase	Illumina [13477767] (imputed)	N
1555	chr6	127175944	127175945	rs62436821	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls	NA	6q22.33	RP11-73O6.4	rs62436821-A	0.435368	3E-13		0.060421277	[0.044-0.077] unit increase	Affymetrix [7288503] (imputed)	N
1555	chr6	127177469	127177470	rs11756347	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption interaction (2df test)	63,608 European ancestry drinkers, 10,193 African American or Afro-Caribbean heavy drinkers,  2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,494 European ancestry non-drinkers, 11,224 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,002 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,452 Hispanic drinkers, 43,316 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,945 Asian ancestry non-drinkers, 6,925 Hispanic non-drinkers	6q22.33	LOC105377991, RSPO3	rs11756347-A	0.57	9E-63	(EA, Hispanic)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1555	chr6	127177718	127177719	rs11754682	31879980	German CA	2019-12-26	Genet Epidemiol	Ordered multinomial regression for genetic association analysis of ordinal phenotypes at Biobank scale.	Hypertension	30,822 British ancestry normal blood pressure individuals, 25,242 British ancestry elevated blood pressure individuals, 50,461 British ancestry stage 1 hypertension individuals, 75,286 British ancestry stage 2 hypertension individuals, 3,754 British ancestry hypertension crisis individuals	NA	6q22.33	NR	rs11754682-?	NR	3E-15		0.04883	NR unit decrease	Affymetrix [464137]	N
1555	chr6	127179524	127179525	rs74541405	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	6q22.33	NR	rs74541405-T	NR	6E-11		0.0341	[0.024-0.044] unit decrease	Affymetrix [9000000] (imputed)	N
1555	chr6	127179524	127179525	rs74541405	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	6q22.33	NR	rs74541405-T	NR	4E-9		0.0305	[0.02-0.041] unit increase	Affymetrix [9000000] (imputed)	N
1555	chr6	127181088	127181089	rs1361831	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Systolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	6q22.33	RSPO3	rs1361831-T	0.541	7E-17		0.482	[0.37-0.6] mm Hg decrease	Affymetrix, Illumina, Perlegen [128272]	N
1555	chr6	127181088	127181089	rs1361831	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Diastolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	6q22.33	RSPO3	rs1361831-T	0.541	2E-14		0.271	[0.2-0.34] mm Hg decrease	Affymetrix, Illumina, Perlegen [128272]	N
1555	chr6	127182810	127182811	rs76785323	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	6q22.33		rs76785323-A	NR	2E-32		0.0229	[0.019-0.027] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
1555	chr6	127182819	127182820	rs13220350	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	6q22.33		rs13220350-A	NR	1E-27		0.021	[0.017-0.025] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1555	chr6	127183469	127183470	rs138299249	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6q22.33	RPS4XP9	rs138299249-G	NR	1E-18		0.0315141	[0.025-0.039] unit decrease	Affymetrix [319769] (imputed)	N
1555	chr6	127183469	127183470	rs138299249	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6q22.33	RPS4XP9	rs138299249-G	NR	6E-18		0.0308961	[0.024-0.038] unit decrease	Affymetrix [319769] (imputed)	N
1555	chr6	127183469	127183470	rs138299249	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	6q22.33	RPS4XP9	rs138299249-G	NR	3E-9		0.0221649	[0.015-0.029] unit increase	Affymetrix [321788] (imputed)	N
1555	chr6	127183469	127183470	rs138299249	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6q22.33	RPS4XP9	rs138299249-G	NR	2E-16		0.0293832	[0.022-0.036] unit increase	Affymetrix [321016] (imputed)	N
1555	chr6	127183469	127183470	rs138299249	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6q22.33	RPS4XP9	rs138299249-G	NR	1E-12		0.0277941	[0.02-0.035] unit increase	Affymetrix [323123] (imputed)	N
1555	chr6	127183469	127183470	rs138299249	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6q22.33	RPS4XP9	rs138299249-G	NR	2E-9		0.0217353	[0.015-0.029] unit decrease	Affymetrix [321169] (imputed)	N
1555	chr6	127184985	127184986	rs13198983	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	6q22.33		rs13198983-A	NR	9E-27		0.022	[0.018-0.026] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1555	chr6	127184986	127184987	rs13198641	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	6q22.33	intergenic	rs13198641-A	0.6356	4E-12		0.0208	[0.015-0.027] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1555	chr6	127185800	127185801	rs9375476	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	145,515 East Asian ancestry individuals	NA	6q22.33		rs9375476-A	0.436518	4E-10		0.0226757	[0.016-0.03] unit increase	Illumina [13477770] (imputed)	N
1555	chr6	127185800	127185801	rs9375476	32963231	Hofer E	2020-09-22	Nat Commun	Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.	Cortical surface area	18,617 European and African American ancestry individuals	22,363 European ancestry individuals	6q22.33	RSPO3	rs9375476-?		4E-17	(Pericalcarine)			Affymetrix, Illumina [NR] (imputed)	N
1555	chr6	127185800	127185801	rs9375476	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	6q22.33	NR	rs9375476-A	0.233792	2E-11		0.0535102	[0.038-0.069] unit increase	Affymetrix [17914406] (imputed)	N
1555	chr6	127187657	127187658	rs1930948	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls, 20,367 East Asian ancestry cases, 158,359 East Asian ancestry controls	NA	6q22.33		rs1930948-G	NR	3E-13		0.0604	[0.044-0.077] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1555	chr6	127188095	127188096	rs35898420	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	6q22.33		rs35898420-A	NR	9E-9		0.0135	[0.009-0.018] unit decrease	Affymetrix, Illumina [20536134] (imputed)	N
1555	chr6	127188095	127188096	rs35898420	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	6q22.33		rs35898420-A	NR	1E-8		0.0135	[0.0088-0.0182] unit decrease	Affymetrix, Illumina [20521447] (imputed)	N
1555	chr6	127189871	127189872	rs186296323	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6q22.33	RPS4XP9	rs186296323-C	NR	4E-8		0.0649735	[0.042-0.088] unit increase	Affymetrix [321169] (imputed)	N
1555	chr6	127197741	127197741	rs77491205	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	6q22.33	NR	rs77491205-G	0.618007	1E-12		0.0195912	[0.014-0.025] unit increase	Affymetrix [16585745] (imputed)	N
1555	chr6	127197772	127197773	rs9398823	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls	NA	6q22.33	RP11-73O6.4	rs9398823-G	0.437024	1E-24		0.08327413	[0.067-0.099] unit increase	Affymetrix [7288503] (imputed)	N
1555	chr6	127198629	127198630	rs9388537	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption interaction (2df test)	63,607 European ancestry drinkers, 10,193 African American or Afro-Caribbean drinkers, 2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,492 European ancestry non-drinkers, 11,223 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,058 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	6q22.33	LOC105377990, RSPO3	rs9388537-A	0.58	5E-31	(AA, EA, Hispanic)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1555	chr6	127200642	127200643	rs11154376	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption interaction (2df test)	91,110 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	237,996 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,315 European ancestry non-drinkers, 2,761 African ancestry non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	6q22.33	LOC105377990, RSPO3	rs11154376-A	0.58	3E-18	(AA, EA, Hispanic)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1555	chr6	127202363	127202364	rs72980836	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6q22.33	RPS4XP9	rs72980836-T	NR	2E-10		0.0414923	[0.029-0.054] unit increase	Affymetrix [319769] (imputed)	N
1555	chr6	127202363	127202364	rs72980836	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6q22.33	RPS4XP9	rs72980836-T	NR	5E-11		0.0427239	[0.03-0.055] unit increase	Affymetrix [319769] (imputed)	N
1555	chr6	127202363	127202364	rs72980836	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	6q22.33	RPS4XP9	rs72980836-T	NR	4E-10		0.0424039	[0.029-0.056] unit decrease	Affymetrix [321788] (imputed)	N
1555	chr6	127202363	127202364	rs72980836	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6q22.33	NR	rs72980836-?	NR	2E-12				Affymetrix [~ 8270000] (imputed)	N
1555	chr6	127204622	127204623	rs9375477	32963231	Hofer E	2020-09-22	Nat Commun	Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.	Cortical surface area	18,617 European and African American ancestry individuals	22,363 European ancestry individuals	6q22.33	RSPO3	rs9375477-?		1E-19	(Global)			Affymetrix, Illumina [NR] (imputed)	N
1555	chr6	127204622	127204623	rs9375477	32198502	Shin J	2020-03-20	Cereb Cortex	Global and Regional Development of the Human Cerebral Cortex: Molecular Architecture and Occupational Aptitudes.	Cortical surface area (global PC1)	23,784 European ancestry individuals	19,512 European ancestry individuals, 6,234 individuals	6q22.33	RPS4XP9	rs9375477-?	NR	2E-10	(EA)	1.2224	[0.85-1.6] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1555	chr6	127204622	127204623	rs9375477	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	6q22.33	NR	rs9375477-A	0.8231	5E-19	(total)	931.4776	[726.48-1136.47] unit decrease	Affymetrix, Illumina [NR]	N
1555	chr6	127204622	127204623	rs9375477	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	6q22.33	RSPO3	rs9375477-A	0.847346	3E-14		0.0202311	[0.015-0.025] unit decrease	NR [13737936] (imputed)	N
1555	chr6	127204622	127204623	rs9375477	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	6q22.33		rs9375477-?	NR	3E-37				NR [~ 8900000] (imputed)	N
1555	chr6	127204622	127204623	rs9375477	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6q22.33		rs9375477-?	NR	8E-38		0.0356555	[0.03-0.041] unit decrease	Affymetrix [20259828] (imputed)	N
1555	chr6	127204622	127204623	rs9375477	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6q22.33	Intergenic	rs9375477-A	0.8337	3E-8	(MTAG)	0.0099	[0.0064-0.0134] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1555	chr6	127205535	127205535	rs779008104	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	6q22.33	NR	rs779008104-AAAACAGATAC	0.56565	2E-18		0.024464	[0.019-0.03] unit increase	Affymetrix [16580851] (imputed)	N
1555	chr6	127210092	127210093	rs2151522	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 12, vertical position of sublabial sulcus relative to central midface)	2,187 European ancestry individuals	NA	6q22.33	NR	rs2151522-A	0.3856	6E-7		0.1547	[0.094-0.215] unit increase	Illumina [10677593] (imputed)	N
1555	chr6	127217491	127217492	rs2095242	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6q22.33	RPS4XP9	rs2095242-G	NR	1E-9		0.0270247	[0.018-0.036] unit increase	Affymetrix [319769] (imputed)	N
1555	chr6	127217491	127217492	rs2095242	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6q22.33	RPS4XP9	rs2095242-G	NR	3E-10		0.0281103	[0.019-0.037] unit increase	Affymetrix [319769] (imputed)	N
1555	chr6	127219930	127219931	rs12663110	30158200	Trajanoska K	2018-08-29	BMJ	Assessment of the genetic and clinical determinants of fracture risk: genome wide association and mendelian randomisation study.	Fractures	37,857 European or East Asian ancestry cases, 227,116 European or East Asian ancestry controls	18,779 European, East Asian or other ancestry cases, 32,078 European, East Asian or other ancestry controls	6q22.33		rs12663110-C	0.3991	2E-6		1.04		Affymetrix, Illumina [2539801] (imputed)	N
1555	chr6	127226685	127226685	rs35998020	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6q22.33	RSPO3	rs35998020-GCTCT	NR	1E-10		0.0321928	[0.022-0.042] unit decrease	Affymetrix [319769] (imputed)	N
1555	chr6	127226685	127226685	rs35998020	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6q22.33	RSPO3	rs35998020-GCTCT	NR	6E-10		0.0310583	[0.021-0.041] unit decrease	Affymetrix [319769] (imputed)	N
1555	chr6	127233032	127233033	rs6908008	30158200	Trajanoska K	2018-08-29	BMJ	Assessment of the genetic and clinical determinants of fracture risk: genome wide association and mendelian randomisation study.	Fractures	37,857 European or East Asian ancestry cases, 227,116 European or East Asian ancestry controls	18,779 European, East Asian or other ancestry cases, 32,078 European, East Asian or other ancestry controls	6q22.33		rs6908008-G	0.399	1E-6		1.04		Affymetrix, Illumina [2539801] (imputed)	N
1555	chr6	127246736	127246737	rs9401921	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6q22.33	RSPO3	rs9401921-G	NR	2E-18		0.0254922	[0.02-0.031] unit decrease	Affymetrix [319769] (imputed)	N
1555	chr6	127246736	127246737	rs9401921	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6q22.33	RSPO3	rs9401921-G	NR	5E-18		0.0251578	[0.019-0.031] unit decrease	Affymetrix [319769] (imputed)	N
1555	chr6	127246736	127246737	rs9401921	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6q22.33	RSPO3	rs9401921-G	NR	5E-11		0.0193564	[0.014-0.025] unit decrease	Affymetrix [321169] (imputed)	N
1555	chr6	127251020	127251021	rs9491675	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	6q22.33	RSPO3	rs9491675-A	NR	1E-10		0.0268698	[0.019-0.035] unit decrease	Affymetrix [321788] (imputed)	N
1555	chr6	127251020	127251021	rs9491675	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	6q22.33	NR	rs9491675-A	NR	1E-11		0.0229	[0.016-0.03] unit increase	Affymetrix [9000000] (imputed)	N
1555	chr6	127252864	127252865	rs10457485	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6q22.33	RSPO3	rs10457485-T	NR	9E-18		0.0520502	[0.04-0.064] unit increase	Affymetrix [319769] (imputed)	N
1555	chr6	127252864	127252865	rs10457485	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6q22.33	RSPO3	rs10457485-T	NR	4E-18		0.0526206	[0.041-0.065] unit increase	Affymetrix [319769] (imputed)	N
1555	chr6	127252864	127252865	rs10457485	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	6q22.33	RSPO3	rs10457485-T	NR	9E-12		0.0431098	[0.031-0.055] unit decrease	Affymetrix [321788] (imputed)	N
1555	chr6	127253074	127253075	rs190758711	29213071	Mendez-Giraldez R	2017-12-06	Sci Rep	GWAS of the electrocardiographic QT interval in Hispanics/Latinos generalizes previously identified loci and identifies population-specific signals.	QT interval	15,997 Hispanic/Latino individuals	NA	6q22.33	RSPO3	rs190758711-C	0.01	4E-6		12.03	[6.89-17.17] ms increase	Affymetrix, Illumina [up to 17586686] (imputed)	N
1555	chr6	127253479	127253480	rs552743052	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6q22.33	NR	rs552743052-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
1555	chr6	127255254	127255255	rs72980888	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6q22.33	RSPO3	rs72980888-T	NR	4E-40		0.160231	[0.14-0.18] unit increase	Affymetrix [319769] (imputed)	N
1555	chr6	127255254	127255255	rs72980888	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6q22.33	RSPO3	rs72980888-T	NR	1E-40		0.161275	[0.14-0.18] unit increase	Affymetrix [319769] (imputed)	N
1555	chr6	127255254	127255255	rs72980888	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6q22.33	RSPO3	rs72980888-T	NR	7E-20		0.111432	[0.088-0.135] unit increase	Affymetrix [321114] (imputed)	N
1555	chr6	127255254	127255255	rs72980888	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6q22.33	RSPO3	rs72980888-T	NR	6E-19		0.108735	[0.085-0.133] unit increase	Affymetrix [321169] (imputed)	N
1555	chr6	127260106	127260107	rs1930954	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6q22.33	RSPO3	rs1930954-T	NR	3E-8		0.0335604	[0.022-0.045] unit decrease	Affymetrix [323123] (imputed)	N
1555	chr6	127260252	127260253	rs112711363	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6q22.33	NR	rs112711363-?	NR	7E-11				Affymetrix [~ 8270000] (imputed)	N
1555	chr6	127260252	127260253	rs112711363	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6q22.33	NR	rs112711363-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
1555	chr6	127260496	127260497	rs1930955	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	6q22.33	RSPO3	rs1930955-G	NR	3E-15		0.0232838	[0.017-0.029] unit increase	Affymetrix [321788] (imputed)	N
1555	chr6	127260496	127260497	rs1930955	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6q22.33	RSPO3	rs1930955-G	NR	5E-13		0.0204867	[0.015-0.026] unit increase	Affymetrix [321016] (imputed)	N
1555	chr6	127260496	127260497	rs1930955	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6q22.33	NR	rs1930955-?	NR	2E-33				Affymetrix [~ 8270000] (imputed)	N
1555	chr6	127260496	127260497	rs1930955	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6q22.33	NR	rs1930955-?	NR	7E-10				Affymetrix [~ 8270000] (imputed)	N
1555	chr6	127260496	127260497	rs1930955	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	6q22.33		rs1930955-?	NR	8E-30				NR [~ 8900000] (imputed)	N
1556	chr6	127281546	127281547	rs987763	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6q22.33	RSPO3	rs987763-T	NR	5E-34		0.0349417	[0.029-0.041] unit decrease	Affymetrix [319769] (imputed)	N
1556	chr6	127281546	127281547	rs987763	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6q22.33	RSPO3	rs987763-T	NR	3E-34		0.0351277	[0.029-0.041] unit decrease	Affymetrix [319769] (imputed)	N
1556	chr6	127281546	127281547	rs987763	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6q22.33	RSPO3	rs987763-T	NR	3E-18		0.0252916	[0.02-0.031] unit decrease	Affymetrix [321114] (imputed)	N
1556	chr6	127281546	127281547	rs987763	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6q22.33	RSPO3	rs987763-T	NR	6E-9		0.0182129	[0.012-0.024] unit increase	Affymetrix [323123] (imputed)	N
1556	chr6	127281546	127281547	rs987763	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6q22.33	RSPO3	rs987763-T	NR	5E-19		0.0259171	[0.02-0.032] unit decrease	Affymetrix [321169] (imputed)	N
1556	chr6	127302456	127302457	rs1930939	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6q22.33	RSPO3	rs1930939-C	NR	4E-9		0.0293784	[0.02-0.039] unit increase	Affymetrix [321114] (imputed)	N
1556	chr6	127303159	127303160	rs549841725	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6q22.33	NR	rs549841725-?	NR	7E-12				Affymetrix [~ 8270000] (imputed)	N
1556	chr6	127316842	127316843	rs1930941	31809533	Han X	2019-09-06	Hum Mol Genet	Genome-wide association analysis of 95 549 individuals identifies novel loci and genes influencing optic disc morphology.	Optic disc size	67,040 British ancestry individuals	28,509 European ancestry individuals	6q22.33	RSPO3	rs1930941-A	0.45	1E-15		0.02	unit increase	Affymetrix [8928767] (imputed)	N
1556	chr6	127326641	127326642	rs13212016	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	6q22.33	AL356534.1	rs13212016-T	0.2707	2E-21		0.0202	[0.016-0.024] unit decrease	Affymetrix [18391927] (imputed)	N
1556	chr6	127327854	127327854	rs201604982	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6q22.33	RSPO3	rs201604982-CT	NR	1E-9		0.0806457	[0.055-0.107] unit increase	Affymetrix [319769] (imputed)	N
1556	chr6	127327854	127327854	rs201604982	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6q22.33	RSPO3	rs201604982-CT	NR	1E-9		0.0806422	[0.055-0.107] unit increase	Affymetrix [319769] (imputed)	N
1556	chr6	127333168	127333169	rs144081232	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6q22.33	RSPO3	rs144081232-T	NR	3E-38		0.169263	[0.14-0.19] unit increase	Affymetrix [319769] (imputed)	N
1556	chr6	127333168	127333169	rs144081232	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6q22.33	RSPO3	rs144081232-T	NR	2E-10		0.091607	[0.063-0.12] unit increase	Affymetrix [323858] (imputed)	N
1556	chr6	127333168	127333169	rs144081232	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6q22.33	RSPO3	rs144081232-T	NR	7E-40		0.173034	[0.15-0.2] unit increase	Affymetrix [319769] (imputed)	N
1556	chr6	127333168	127333169	rs144081232	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6q22.33	RSPO3	rs144081232-T	NR	6E-11		0.0943285	[0.066-0.123] unit increase	Affymetrix [127266] (imputed)	N
1556	chr6	127333168	127333169	rs144081232	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6q22.33	RSPO3	rs144081232-T	NR	1E-18		0.116254	[0.09-0.142] unit increase	Affymetrix [321114] (imputed)	N
1556	chr6	127333168	127333169	rs144081232	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	6q22.33	RSPO3	rs144081232-T	NR	4E-29		0.152796	[0.13-0.18] unit decrease	Affymetrix [321788] (imputed)	N
1556	chr6	127333168	127333169	rs144081232	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	6q22.33	RSPO3	rs144081232-T	NR	2E-11		0.0987282	[0.07-0.128] unit decrease	Affymetrix [323858] (imputed)	N
1556	chr6	127333168	127333169	rs144081232	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6q22.33	RSPO3	rs144081232-T	NR	4E-14		0.0989395	[0.073-0.125] unit decrease	Affymetrix [321016] (imputed)	N
1556	chr6	127333168	127333169	rs144081232	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6q22.33	RSPO3	rs144081232-T	NR	2E-15		0.105142	[0.079-0.131] unit increase	Affymetrix [321169] (imputed)	N
1556	chr6	127346385	127346386	rs2800711	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6q22.33	RSPO3	rs2800711-T	NR	2E-32		0.0622376	[0.052-0.073] unit increase	Affymetrix [319769] (imputed)	N
1556	chr6	127346385	127346386	rs2800711	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6q22.33	RSPO3	rs2800711-T	NR	5E-8		0.0318741	[0.02-0.043] unit increase	Affymetrix [323858] (imputed)	N
1556	chr6	127346385	127346386	rs2800711	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6q22.33	RSPO3	rs2800711-T	NR	8E-33		0.0625865	[0.052-0.073] unit increase	Affymetrix [319769] (imputed)	N
1556	chr6	127346385	127346386	rs2800711	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6q22.33	RSPO3	rs2800711-T	NR	7E-15		0.0412564	[0.031-0.052] unit increase	Affymetrix [321114] (imputed)	N
1556	chr6	127346385	127346386	rs2800711	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	6q22.33	RSPO3	rs2800711-T	NR	5E-20		0.0500066	[0.039-0.061] unit decrease	Affymetrix [321788] (imputed)	N
1556	chr6	127346385	127346386	rs2800711	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6q22.33	RSPO3	rs2800711-T	NR	1E-14		0.0402978	[0.03-0.051] unit decrease	Affymetrix [321016] (imputed)	N
1556	chr6	127346385	127346386	rs2800711	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6q22.33	RSPO3	rs2800711-T	NR	8E-15		0.0411789	[0.031-0.052] unit increase	Affymetrix [321169] (imputed)	N
1556	chr6	127346385	127346386	rs2800711	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6q22.33	NR	rs2800711-?	NR	3E-39				Affymetrix [~ 8270000] (imputed)	N
1556	chr6	127346385	127346386	rs2800711	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6q22.33	NR	rs2800711-?	NR	8E-13				Affymetrix [~ 8270000] (imputed)	N
1556	chr6	127348031	127348032	rs72982840	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6q22.33	NR	rs72982840-?	NR	2E-46				Affymetrix [~ 8270000] (imputed)	N
1556	chr6	127348031	127348032	rs72982840	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6q22.33	NR	rs72982840-?	NR	6E-18				Affymetrix [~ 8270000] (imputed)	N
1556	chr6	127363087	127363088	rs62437226	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	6q22.33	RSPO3	rs62437226-A	NR	8E-12		0.0519125	[0.037-0.067] unit decrease	Affymetrix [323858] (imputed)	N
1556	chr6	127367922	127367923	rs181173530	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6q22.33	NR	rs181173530-?	NR	9E-67				Affymetrix [~ 8270000] (imputed)	N
1556	chr6	127367922	127367923	rs181173530	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6q22.33	NR	rs181173530-?	NR	5E-32				Affymetrix [~ 8270000] (imputed)	N
1556	chr6	127373174	127373175	rs62437231	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6q22.33	RSPO3	rs62437231-C	NR	3E-64		0.11326	[0.1-0.13] unit increase	Affymetrix [319769] (imputed)	N
1556	chr6	127373174	127373175	rs62437231	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6q22.33	RSPO3	rs62437231-C	NR	4E-66		0.115008	[0.1-0.13] unit increase	Affymetrix [319769] (imputed)	N
1556	chr6	127373174	127373175	rs62437231	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6q22.33	RSPO3	rs62437231-C	NR	2E-32		0.0800218	[0.067-0.093] unit increase	Affymetrix [321114] (imputed)	N
1556	chr6	127373174	127373175	rs62437231	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	6q22.33	RSPO3	rs62437231-C	NR	2E-37		0.0889956	[0.075-0.103] unit decrease	Affymetrix [321788] (imputed)	N
1556	chr6	127373174	127373175	rs62437231	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6q22.33	RSPO3	rs62437231-C	NR	7E-23		0.0658492	[0.053-0.079] unit decrease	Affymetrix [321016] (imputed)	N
1556	chr6	127373174	127373175	rs62437231	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6q22.33	RSPO3	rs62437231-C	NR	1E-30		0.0778903	[0.065-0.091] unit increase	Affymetrix [321169] (imputed)	N
1556	chr6	127378776	127378777	rs2800712	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6q22.33	RSPO3	rs2800712-G	NR	2E-9		0.0238902	[0.016-0.032] unit increase	Affymetrix [319769] (imputed)	N
1556	chr6	127378776	127378777	rs2800712	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6q22.33	RSPO3	rs2800712-G	NR	8E-10		0.0245475	[0.017-0.032] unit increase	Affymetrix [319769] (imputed)	N
1556	chr6	127378776	127378777	rs2800712	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6q22.33	RSPO3	rs2800712-G	NR	1E-8		0.0228899	[0.015-0.031] unit increase	Affymetrix [321114] (imputed)	N
1556	chr6	127378776	127378777	rs2800712	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6q22.33	NR	rs2800712-?	NR	6E-12				Affymetrix [~ 8270000] (imputed)	N
1556	chr6	127378776	127378777	rs2800712	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6q22.33	NR	rs2800712-?	NR	4E-10				Affymetrix [~ 8270000] (imputed)	N
1556	chr6	127379918	127379919	rs72976106	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	6q22.33	NR	rs72976106-T	NR	2E-12		0.0438	[0.032-0.056] unit increase	Affymetrix [9000000] (imputed)	N
1556	chr6	127379918	127379919	rs72976106	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	6q22.33	NR	rs72976106-T	NR	4E-10		0.0409	[0.028-0.054] unit decrease	Affymetrix [9000000] (imputed)	N
1556	chr6	127383736	127383736	rs559057137	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6q22.33	RSPO3	rs559057137-GT	NR	2E-42		0.0399042	[0.034-0.046] unit decrease	Affymetrix [319769] (imputed)	N
1556	chr6	127383736	127383736	rs559057137	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6q22.33	RSPO3	rs559057137-GT	NR	2E-43		0.0404018	[0.035-0.046] unit decrease	Affymetrix [319769] (imputed)	N
1556	chr6	127383736	127383736	rs559057137	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	6q22.33	RSPO3	rs559057137-GT	NR	6E-24		0.0306962	[0.025-0.037] unit increase	Affymetrix [321788] (imputed)	N
1556	chr6	127383736	127383736	rs559057137	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6q22.33	RSPO3	rs559057137-GT	NR	7E-17		0.0243722	[0.019-0.03] unit increase	Affymetrix [321016] (imputed)	N
1556	chr6	127383859	127383860	rs1936811	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex x age interaction (4df test)	up to 43,776 European ancestry men aged <50, up to 50,526 European ancestry women aged <50, up to 69,944 European ancestry men aged >50, up to 88,129 European ancestry women aged >50	NA	6q22.33	RSPO3, RNF146, ECHDC1, KIAA0408, SOGA3	rs1936811-T	0.6104	6E-16				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1556	chr6	127383859	127383860	rs1936811	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI (age >50)	up to 69,944 European ancestry men, up to 88,129 European ancestry women	NA	6q22.33	RSPO3, RNF146, ECHDC1, KIAA0408, SOGA3	rs1936811-T	0.6104	2E-11	(women)	0.0439	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1556	chr6	127383859	127383860	rs1936811	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI (age <50)	up to 43,776 European ancestry men, up to 50,526 European ancestry women	NA	6q22.33	RSPO3-RNF146, ECHDC1, KIAA0408, SOGA3	rs1936811-T	0.61	5E-7	(women)	0.042	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1556	chr6	127383859	127383860	rs1936811	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	6q22.33	RSPO3, RNF146, ECHDC1, KIAA0408, SOGA3	rs1936811-T	0.6104	2E-15		0.0439	units increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1556	chr6	127383979	127383980	rs2800713	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6q22.33	RSPO3	rs2800713-A	NR	7E-64		0.105423	[0.093-0.118] unit increase	Affymetrix [319769] (imputed)	N
1556	chr6	127383979	127383980	rs2800713	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6q22.33	RSPO3	rs2800713-A	NR	2E-65		0.106831	[0.095-0.119] unit increase	Affymetrix [319769] (imputed)	N
1556	chr6	127383979	127383980	rs2800713	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6q22.33	RSPO3	rs2800713-A	NR	2E-33		0.0761428	[0.064-0.089] unit increase	Affymetrix [321114] (imputed)	N
1556	chr6	127383979	127383980	rs2800713	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	6q22.33	RSPO3	rs2800713-A	NR	4E-36		0.0816917	[0.069-0.094] unit decrease	Affymetrix [321788] (imputed)	N
1556	chr6	127383979	127383980	rs2800713	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	6q22.33	RSPO3	rs2800713-A	NR	1E-10		0.04578	[0.032-0.06] unit decrease	Affymetrix [323858] (imputed)	N
1556	chr6	127383979	127383980	rs2800713	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6q22.33	RSPO3	rs2800713-A	NR	7E-21		0.0585615	[0.046-0.071] unit decrease	Affymetrix [321016] (imputed)	N
1556	chr6	127383979	127383980	rs2800713	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6q22.33	RSPO3	rs2800713-A	NR	7E-31		0.0730464	[0.061-0.085] unit increase	Affymetrix [321169] (imputed)	N
1556	chr6	127383979	127383980	rs2800713	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6q22.33	NR	rs2800713-?	NR	3E-75				Affymetrix [~ 8270000] (imputed)	N
1556	chr6	127387441	127387441	rs371902890	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6q22.33	RSPO3	rs371902890-C	NR	1E-20		0.0271167	[0.021-0.033] unit decrease	Affymetrix [321114] (imputed)	N
1556	chr6	127387441	127387441	rs371902890	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6q22.33	RSPO3	rs371902890-C	NR	4E-21		0.027574	[0.022-0.033] unit decrease	Affymetrix [321169] (imputed)	N
1556	chr6	127391843	127391844	rs972275	19084217	Benyamin B	2008-12-17	Am J Hum Genet	Variants in TF and HFE explain approximately 40% of genetic variation in serum-transferrin levels.	Iron status biomarkers	411 European ancestry individuals from 150 families	NA	6q22.33	RSPO3	rs972275-?	NR	2E-6	(serum ferritin)			Affymetrix [100846]	N
1556	chr6	127397558	127397559	rs72957091	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6q22.33	RSPO3	rs72957091-C	NR	7E-20		0.0717963	[0.056-0.087] unit increase	Affymetrix [323858] (imputed)	N
1556	chr6	127397558	127397559	rs72957091	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6q22.33	RSPO3	rs72957091-C	NR	2E-20		0.0730265	[0.058-0.088] unit increase	Affymetrix [127266] (imputed)	N
1556	chr6	127398594	127398595	rs9491689	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6q22.33		rs9491689-?	NR	1E-122		0.0529927	[0.048-0.058] unit decrease	Affymetrix [20259828] (imputed)	N
1556	chr6	127398594	127398595	rs9491689	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	6q22.33	RSPO3	rs9491689-C	0.722291	3E-30	(women)	0.0603721	[0.05-0.071] unit decrease	NR [17166351] (imputed)	N
1556	chr6	127398594	127398595	rs9491689	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	6q22.33	RSPO3	rs9491689-C	0.721726	8E-47		0.0541492	[0.047-0.062] unit decrease	NR [17166351] (imputed)	N
1556	chr6	127398594	127398595	rs9491689	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	6q22.33	RSPO3	rs9491689-C	0.721078	2E-17	(men)	0.0500303	[0.039-0.061] unit decrease	NR [17166351] (imputed)	N
1556	chr6	127398893	127398893	rs148306315	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6q22.33	RSPO3	rs148306315-GCT	NR	1E-113		0.184295	[0.17-0.2] unit increase	Affymetrix [319769] (imputed)	N
1556	chr6	127398893	127398893	rs148306315	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6q22.33	RSPO3	rs148306315-GCT	NR	3E-117		0.187336	[0.17-0.2] unit increase	Affymetrix [319769] (imputed)	N
1556	chr6	127398893	127398893	rs148306315	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6q22.33	RSPO3	rs148306315-GCT	NR	5E-63		0.137719	[0.12-0.15] unit increase	Affymetrix [321114] (imputed)	N
1556	chr6	127398893	127398893	rs148306315	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	6q22.33	RSPO3	rs148306315-GCT	NR	5E-55		0.132334	[0.12-0.15] unit decrease	Affymetrix [321788] (imputed)	N
1556	chr6	127398893	127398893	rs148306315	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	6q22.33	RSPO3	rs148306315-GCT	NR	1E-21		0.0887352	[0.071-0.107] unit decrease	Affymetrix [323858] (imputed)	N
1556	chr6	127398893	127398893	rs148306315	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6q22.33	RSPO3	rs148306315-GCT	NR	4E-31		0.0943975	[0.078-0.11] unit decrease	Affymetrix [321016] (imputed)	N
1556	chr6	127398893	127398893	rs148306315	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6q22.33	RSPO3	rs148306315-GCT	NR	3E-11		0.0591196	[0.042-0.077] unit decrease	Affymetrix [323123] (imputed)	N
1556	chr6	127398893	127398893	rs148306315	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6q22.33	RSPO3	rs148306315-GCT	NR	5E-60		0.134552	[0.12-0.15] unit increase	Affymetrix [321169] (imputed)	N
1556	chr6	127399044	127399045	rs727332	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	6q22.33		rs727332-G	NR	1E-12		0.0172	[0.012-0.022] unit decrease	Affymetrix, Illumina [20535873] (imputed)	N
1556	chr6	127399055	127399056	rs727331	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6q22.33		rs727331-?	NR	3E-19		0.0201596	[0.016-0.025] unit decrease	Affymetrix [20259828] (imputed)	N
1556	chr6	127401977	127401978	rs12194820	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	6q22.33	NR	rs12194820-T	0.2346	9E-17		0.0462	[0.035-0.057] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
1557	chr6	127407240	127407241	rs75077568	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	6q22.33	RSPO3	rs75077568-G	0.97681	4E-24		0.0651387	[0.053-0.078] unit decrease	NR [13737936] (imputed)	N
1557	chr6	127409881	127409882	rs4580892	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6q22.33		rs4580892-?	NR	1E-16				NR [~ 8900000] (imputed)	N
1557	chr6	127409881	127409882	rs4580892	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	6q22.33	NR	rs4580892-T	0.2949	8E-17		0.0527	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
1557	chr6	127409881	127409882	rs4580892	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	6q22.33	NR	rs4580892-T	0.2937	5E-15	(European)	0.0543	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
1557	chr6	127412727	127412728	rs12192275	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	6q22.33	NR	rs12192275-G	0.7885	4E-22		0.0482	[0.038-0.058] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1557	chr6	127412752	127412752	rs140418154	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6q22.33		rs140418154-?	NR	3E-74		0.0608081	[0.054-0.068] unit increase	Affymetrix [20259828] (imputed)	N
1557	chr6	127414439	127414440	rs139242696	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6q22.33	RSPO3	rs139242696-C	NR	2E-12		0.064553	[0.047-0.083] unit increase	Affymetrix [319769] (imputed)	N
1557	chr6	127414439	127414440	rs139242696	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6q22.33	RSPO3	rs139242696-C	NR	2E-12		0.0651182	[0.047-0.083] unit increase	Affymetrix [319769] (imputed)	N
1557	chr6	127414617	127414618	rs719728	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	6q22.33		rs719728-T	NR	1E-11		0.0661	[0.047-0.085] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1557	chr6	127414617	127414618	rs719728	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 29,0641 European ancestry controls	NA	6q22.33	RP11-73O6.4	rs719728-T	0.291654	5E-8		0.06978919	[0.045-0.095] unit decrease	Affymetrix [7288503] (imputed)	N
1557	chr6	127414800	127414801	rs719726	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6q22.33	NR	rs719726-C	NR	1E-7		0.021	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1557	chr6	127414800	127414801	rs719726	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6q22.33	NR	rs719726-C	0.439	9E-8	(EA)	0.023	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1557	chr6	127414800	127414801	rs719726	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6q22.33	NR	rs719726-C	NR	9E-7		0.017	unit increase	Affymetrix [at least 7091467] (imputed)	N
1557	chr6	127414800	127414801	rs719726	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6q22.33	NR	rs719726-C	0.439	1E-6	(EA)	0.019	unit increase	Affymetrix [at least 7091467] (imputed)	N
1557	chr6	127414800	127414801	rs719726	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Triglyceride levels	28,183 East Asian ancestry individuals, 177,861 European ancestry individuals	10,857 Chinese ancestry individuals	6q22.33	RSPO3	rs719726-T	0.529	1E-8	(Trans-ethnic initial)	0.0199	[0.013-0.027] unit increase (EA Beta values)	Affymetrix, Illumina [up to 1900000] (imputed)	N
1557	chr6	127416929	127416930	rs2800733	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	6q22.33	SOGA3	rs2800733-A	0.86	9E-8		1.0752687	[1.05-1.11]	Illumina [12557761] (imputed)	N
1557	chr6	127416929	127416930	rs2800733	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	6q22.33	SOGA3	rs2800733-A	0.7165	6E-11		1.05	[1.03-1.06]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1557	chr6	127419810	127419811	rs2800736	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	6q22.33		rs2800736-A	NR	2E-10		0.0143	[0.01-0.0186] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
1557	chr6	127419810	127419811	rs2800736	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	6q22.33		rs2800736-A	NR	3E-11		0.015	[0.01-0.02] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
1557	chr6	127419810	127419811	rs2800736	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-hip ratio	1,254 whole genome sequenced European ancestry individuals, 3,071 whole genome sequenced individuals, 29,723 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,053 Mylopotamos (founder/genetic isolate) individuals, 879 Pomak (founder/genetic isolate) individuals	206,053 European ancestry individuals	6q22.33	RSPO3	rs2800736-A	0.5209	2E-6		0.0423	[0.025-0.06] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1557	chr6	127419833	127419834	rs2745349	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	6q22.33		rs2745349-C	0.29413	3E-10		0.015346402	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1557	chr6	127419833	127419834	rs2745349	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6q22.33		rs2745349-C	0.29412	1E-12		0.017254617	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1557	chr6	127419833	127419834	rs2745349	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	6q22.33	intergenic	rs2745349-C	0.2932	1E-9		0.02410666	[0.016-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
1557	chr6	127423054	127423055	rs1936792	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	6q22.33	RSPO3	rs1936792-A	NR	7E-47		0.048911	[0.042-0.056] unit decrease	Affymetrix [321788] (imputed)	N
1557	chr6	127423054	127423055	rs1936792	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6q22.33	RSPO3	rs1936792-A	NR	2E-22		0.0318186	[0.025-0.038] unit decrease	Affymetrix [321016] (imputed)	N
1557	chr6	127423054	127423055	rs1936792	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6q22.33	RSPO3	rs1936792-A	NR	4E-8		0.0194958	[0.013-0.026] unit decrease	Affymetrix [323123] (imputed)	N
1557	chr6	127423054	127423055	rs1936792	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density (age over 60)	22,504 European ancestry and African American individuals	NA	6q22.33	NR	rs1936792-A	0.2652	4E-8		0.0607	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
1557	chr6	127425629	127425630	rs1963689	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6q22.33	RSPO3	rs1963689-C	NR	9E-79		0.0613154	[0.055-0.068] unit increase	Affymetrix [319769] (imputed)	N
1557	chr6	127425629	127425630	rs1963689	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6q22.33	RSPO3	rs1963689-C	NR	2E-14		0.0278797	[0.021-0.035] unit increase	Affymetrix [323858] (imputed)	N
1557	chr6	127425629	127425630	rs1963689	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6q22.33	RSPO3	rs1963689-C	NR	2E-81		0.0624274	[0.056-0.069] unit increase	Affymetrix [319769] (imputed)	N
1557	chr6	127425629	127425630	rs1963689	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6q22.33	RSPO3	rs1963689-C	NR	2E-15		0.0287977	[0.022-0.036] unit increase	Affymetrix [127266] (imputed)	N
1557	chr6	127425629	127425630	rs1963689	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6q22.33	RSPO3	rs1963689-C	NR	8E-44		0.0457586	[0.039-0.052] unit increase	Affymetrix [321114] (imputed)	N
1557	chr6	127425629	127425630	rs1963689	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	6q22.33	RSPO3	rs1963689-C	NR	3E-19		0.0334499	[0.026-0.041] unit decrease	Affymetrix [323858] (imputed)	N
1557	chr6	127425629	127425630	rs1963689	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6q22.33	RSPO3	rs1963689-C	NR	1E-37		0.0423759	[0.036-0.049] unit increase	Affymetrix [321169] (imputed)	N
1557	chr6	127425629	127425630	rs1963689	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6q22.33	NR	rs1963689-?	NR	3E-45				Affymetrix [~ 8270000] (imputed)	N
1557	chr6	127425940	127425941	rs2011009	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6q22.33	RSPO3	rs2011009-G	NR	4E-9		0.0377938	[0.025-0.05] unit decrease	Affymetrix [319769] (imputed)	N
1557	chr6	127425940	127425941	rs2011009	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6q22.33	RSPO3	rs2011009-G	NR	7E-9		0.0373052	[0.025-0.05] unit decrease	Affymetrix [319769] (imputed)	N
1557	chr6	127425940	127425941	rs2011009	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6q22.33	NR	rs2011009-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1557	chr6	127426797	127426798	rs2800703	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	6q22.33	NR	rs2800703-G	0.315197	4E-11		0.015894394	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1557	chr6	127426797	127426798	rs2800703	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6q22.33	NR	rs2800703-G	0.315193	3E-14		0.018314164	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1557	chr6	127431487	127431488	rs2800704	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6q22.33		rs2800704-?	NR	4E-28		0.0482303	[0.039-0.057] unit decrease	Affymetrix [20259828] (imputed)	N
1557	chr6	127432656	127432657	rs1936797	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6q22.33	RSPO3	rs1936797-G	0.28959999999999997	7E-12	(EA,women)	0.0407	[0.029-0.052] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1557	chr6	127432656	127432657	rs1936797	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6q22.33	RSPO3	rs1936797-?	0.28890000000000005	3E-11	(EA, women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1557	chr6	127432656	127432657	rs1936797	27286809	Ligthart S	2016-06-10	BMC Genomics	Bivariate genome-wide association study identifies novel pleiotropic loci for lipids and inflammation.	C-reactive protein levels or HDL-cholesterol levels (pleiotropy)	65,000 individuals (C-reactive protein), 99,900 individuals (HDL-cholesterol)	NA	6q22.33	RSPO3	rs1936797-A	NR	7E-9				NR [2501543] (imputed)	N
1557	chr6	127434137	127434138	rs1936799	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	6q22.33	intergenic	rs1936799-T	0.2902	3E-10		0.02487475	[0.017-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
1557	chr6	127435105	127435106	rs6916318	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	6q22.33		rs6916318-?	NR	4E-8		0.00499497	[0.0032-0.0068] unit decrease	NR [NR]	N
1557	chr6	127435105	127435106	rs6916318	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	6q22.33		rs6916318-T	NR	3E-12		0.0134	[0.0097-0.0171] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
1557	chr6	127435105	127435106	rs6916318	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	6q22.33	RSPO3	rs6916318-A	NR	2E-11		0.0216766	[0.015-0.028] unit increase	Affymetrix [323858] (imputed)	N
1557	chr6	127435105	127435106	rs6916318	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6q22.33	RSPO3	rs6916318-A	NR	4E-9		0.018082	[0.012-0.024] unit increase	Affymetrix [323123] (imputed)	N
1557	chr6	127435105	127435106	rs6916318	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	6q22.33	RSPO3	rs6916318-A	0.469158	5E-13		0.00373404	[0.0027-0.0047] unit decrease	Affymetrix [13995440] (imputed)	N
1557	chr6	127435105	127435106	rs6916318	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	6q22.33	CENPW, RSPO3	rs6916318-T	0.53	3E-8		5.53	z-score increase	Affymetrix [4314223] (imputed)	N
1557	chr6	127435105	127435106	rs6916318	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	6q22.33	RSPO3	rs6916318-A	0.469467	2E-40		0.0265583	[0.023-0.03] unit decrease	Affymetrix [NR] (imputed)	N
1557	chr6	127435594	127435595	rs11961815	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.33	RSPO3	rs11961815-A	0.750981	6E-12	(38 ms)	0.0443897	[0.032-0.057] unit decrease	Affymetrix [10000000] (imputed)	N
1557	chr6	127435594	127435595	rs11961815	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.33	RSPO3	rs11961815-A	0.750981	5E-12	(34 ms)	0.0449247	[0.032-0.058] unit decrease	Affymetrix [10000000] (imputed)	N
1557	chr6	127435594	127435595	rs11961815	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.33	RSPO3	rs11961815-A	0.750981	3E-12	(36 ms)	0.0453808	[0.033-0.058] unit decrease	Affymetrix [10000000] (imputed)	N
1557	chr6	127435594	127435595	rs11961815	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q22.33	RSPO3	rs11961815-A	0.750981	2E-11	(40 ms)	0.0431849	[0.031-0.056] unit decrease	Affymetrix [10000000] (imputed)	N
1557	chr6	127436063	127436064	rs1936800	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6q22.33		rs1936800-C	0.47377	3E-8		0.0222294	[0.014-0.03] unit increase	NR [11722792] (imputed)	N
1557	chr6	127436063	127436064	rs1936800	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	HDL cholesterol levels	up to 23,761 African ancestry individuals, 13,171 Asian ancestry individuals, up to 90,272 European ancestry individuals, 6,620 Hispanic individuals	NA	6q22.33		rs1936800-T	0.5168	2E-8		0.0062	[0.004-0.0084] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1557	chr6	127436063	127436064	rs1936800	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6q22.33	NR	rs1936800-C	NR	4E-8		0.021	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1557	chr6	127436063	127436064	rs1936800	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6q22.33	NR	rs1936800-C	0.487	2E-8	(EA)	0.024	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1557	chr6	127436063	127436064	rs1936800	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6q22.33	NR	rs1936800-C	NR	6E-6		0.019	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1557	chr6	127436063	127436064	rs1936800	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6q22.33	NR	rs1936800-C	0.487	9E-6	(EA)	0.021	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1557	chr6	127436063	127436064	rs1936800	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6q22.33	NR	rs1936800-C	0.487	5E-6	(EA)	0.017	unit increase	Affymetrix [at least 7091467] (imputed)	N
1557	chr6	127436063	127436064	rs1936800	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Triglycerides	94,595 European ancestry individuals	93,982 European ancestry individuals	6q22.33	RSPO3	rs1936800-C	0.49	3E-8		0.02	[NR] mg/dL decrease	NR [NR] (imputed)	N
1557	chr6	127436063	127436064	rs1936800	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	6q22.33	RSPO3	rs1936800-C	0.49	3E-10		0.02	[NR] unit increase	NR [NR] (imputed)	N
1557	chr6	127436063	127436064	rs1936800	22797727	Okada Y	2012-07-15	Nat Genet	Meta-analysis identifies multiple loci associated with kidney function-related traits in east Asian populations.	Renal function-related traits (BUN)	39,717 East Asian ancestry individuals	17,461 East Asian ancestry individuals	6q22.33	RSPO3	rs1936800-T	0.50	1E-11		0.0052	[0.0036-0.0068] mg/dl increase	Affymetrix, Illumina [2281523] (imputed)	N
1557	chr6	127436644	127436645	rs1555091	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6q22.33	RSPO3	rs1555091-A	0.2617	3E-11	(EA, women)	0.0367	[0.026-0.047] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1557	chr6	127436906	127436906	rs397720145	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	6q22.33		rs397720145-GA	NR	1E-27		0.0255	[0.021-0.03] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
1557	chr6	127437099	127437100	rs9491694	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	6q22.33	MIR588, RSPO3	rs9491694-A	NR	3E-10	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1557	chr6	127437099	127437100	rs9491694	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	6q22.33	MIR588, RSPO3	rs9491694-A	NR	1E-9				Affymetrix, Illumina [NR] (imputed)	N
1557	chr6	127437099	127437100	rs9491694	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	6q22.33	MIR588, RSPO3	rs9491694-A	NR	9E-10	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1557	chr6	127437099	127437100	rs9491694	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	6q22.33	MIR588, RSPO3	rs9491694-A	NR	9E-10				Affymetrix, Illumina [NR] (imputed)	N
1557	chr6	127437099	127437100	rs9491694	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	6q22.33	MIR588, RSPO3	rs9491694-A	NR	2E-7	(EA)	0.015	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1557	chr6	127437099	127437100	rs9491694	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	6q22.33	MIR588, RSPO3	rs9491694-A	NR	2E-7		0.009	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1557	chr6	127437099	127437100	rs9491694	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	6q22.33	MIR588, RSPO3	rs9491694-A	NR	5E-14	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1557	chr6	127437099	127437100	rs9491694	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	6q22.33	MIR588, RSPO3	rs9491694-A	NR	2E-10				Affymetrix, Illumina [NR] (imputed)	N
1557	chr6	127437099	127437100	rs9491694	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	6q22.33	MIR588, RSPO3	rs9491694-A	NR	6E-13				Affymetrix, Illumina [NR] (imputed)	N
1557	chr6	127437099	127437100	rs9491694	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	6q22.33	MIR588, RSPO3	rs9491694-A	NR	1E-14	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1557	chr6	127437099	127437100	rs9491694	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	6q22.33	MIR588, RSPO3	rs9491694-A	NR	8E-8		0.005	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1557	chr6	127437099	127437100	rs9491694	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	6q22.33	MIR588, RSPO3	rs9491694-A	NR	1E-10	(EA)	0.008	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1557	chr6	127437099	127437100	rs9491694	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	6q22.33	MIR588, RSPO3	rs9491694-A	NR	8E-6		0.004774	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1557	chr6	127437099	127437100	rs9491694	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	6q22.33	MIR588, RSPO3	rs9491694-A	NR	2E-6	(EA)	0.008463	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1557	chr6	127437616	127437617	rs2800708	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	6q22.33		rs2800708-C	0.469805	2E-15		0.0314893	[0.024-0.039] unit decrease	NR [11722792] (imputed)	N
1557	chr6	127437616	127437617	rs2800708	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very small VLDL	115,082 European ancestry individuals	NA	6q22.33		rs2800708-C	0.469805	2E-10		0.0256025	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
1557	chr6	127437616	127437617	rs2800708	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in HDL	115,082 European ancestry individuals	NA	6q22.33		rs2800708-C	0.469805	2E-8		0.0226238	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
1557	chr6	127437616	127437617	rs2800708	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	6q22.33		rs2800708-C	0.469793	2E-9		0.0240771	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
1557	chr6	127438641	127438642	rs10872311	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6q22.33	RSPO3	rs10872311-A	NR	3E-90		0.0652113	[0.059-0.072] unit increase	Affymetrix [319769] (imputed)	N
1557	chr6	127438641	127438642	rs10872311	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6q22.33	RSPO3	rs10872311-A	NR	1E-11		0.0244031	[0.017-0.031] unit increase	Affymetrix [323858] (imputed)	N
1557	chr6	127438641	127438642	rs10872311	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6q22.33	RSPO3	rs10872311-A	NR	1E-92		0.0661095	[0.06-0.072] unit increase	Affymetrix [319769] (imputed)	N
1557	chr6	127438641	127438642	rs10872311	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6q22.33	RSPO3	rs10872311-A	NR	4E-12		0.0250243	[0.018-0.032] unit increase	Affymetrix [127266] (imputed)	N
1557	chr6	127438641	127438642	rs10872311	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6q22.33	RSPO3	rs10872311-A	NR	2E-48		0.047839	[0.041-0.054] unit increase	Affymetrix [321114] (imputed)	N
1557	chr6	127438641	127438642	rs10872311	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	6q22.33	RSPO3	rs10872311-A	NR	4E-45		0.0475258	[0.041-0.054] unit decrease	Affymetrix [321788] (imputed)	N
1557	chr6	127438641	127438642	rs10872311	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	6q22.33	RSPO3	rs10872311-A	NR	2E-12		0.026119	[0.019-0.033] unit decrease	Affymetrix [323858] (imputed)	N
1557	chr6	127438641	127438642	rs10872311	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6q22.33	RSPO3	rs10872311-A	NR	2E-25		0.033715	[0.027-0.04] unit decrease	Affymetrix [321016] (imputed)	N
1557	chr6	127438641	127438642	rs10872311	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6q22.33	RSPO3	rs10872311-A	NR	2E-47		0.0473584	[0.041-0.054] unit increase	Affymetrix [321169] (imputed)	N
1557	chr6	127438641	127438642	rs10872311	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6q22.33	NR	rs10872311-?	NR	4E-99				Affymetrix [~ 8270000] (imputed)	N
1557	chr6	127438641	127438642	rs10872311	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	6q22.33	RSPO3	rs10872311-A	0.2508	8E-6		0.0356	[0.02-0.051] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1557	chr6	127438965	127438966	rs147697812	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6q22.33		rs147697812-?	NR	2E-28		0.0796983	[0.065-0.094] unit decrease	Affymetrix [20259828] (imputed)	N
1557	chr6	127439296	127439297	rs2800709	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	6q22.33		rs2800709-T	0.48015	2E-16		0.0324298	[0.025-0.04] unit decrease	NR [11722792] (imputed)	N
1557	chr6	127439296	127439297	rs2800709	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small LDL	115,082 European ancestry individuals	NA	6q22.33		rs2800709-T	0.48015	1E-12		0.0284315	[0.021-0.036] unit decrease	NR [11722792] (imputed)	N
1557	chr6	127439296	127439297	rs2800709	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium LDL	115,082 European ancestry individuals	NA	6q22.33		rs2800709-T	0.48015	5E-10		0.0251901	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
1557	chr6	127439296	127439297	rs2800709	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in LDL	115,082 European ancestry individuals	NA	6q22.33		rs2800709-T	0.48015	1E-8		0.023214	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
1557	chr6	127439296	127439297	rs2800709	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Varicose veins	22,037 European ancestry cases, 437,665 European ancestry controls, 474 East Asian ancestry cases, 178,252 East Asian ancestry controls	NA	6q22.33		rs2800709-G	NR	1E-10		0.0685	[0.048-0.089] unit decrease	Affymetrix, Illumina [25842955] (imputed)	N
1557	chr6	127439296	127439297	rs2800709	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q22.33	NR	rs2800709-G	0.532075	1E-34				Affymetrix, Illumina [24332387] (imputed)	N
1557	chr6	127439896	127439897	rs141783576	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	6q22.33		rs141783576-?	NR	2E-9		0.0107555	[0.0072-0.0143] unit decrease	NR [NR]	N
1557	chr6	127439896	127439897	rs141783576	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6q22.33	RSPO3	rs141783576-C	NR	3E-22		0.0578348	[0.046-0.07] unit decrease	Affymetrix [323123] (imputed)	N
1557	chr6	127439896	127439897	rs141783576	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6q22.33	RSPO3	rs141783576-C	NR	4E-10		0.037773	[0.026-0.05] unit increase	Affymetrix [323858] (imputed)	N
1557	chr6	127439896	127439897	rs141783576	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	6q22.33	RSPO3	rs141783576-?	NR	2E-11		0.0335	[0.025-0.042] unit increase	Affymetrix [5701386] (imputed)	N
1557	chr6	127439896	127439897	rs141783576	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Hip circumference variance	346,781 European ancestry individuals	NA	6q22.33	RSPO3	rs141783576-?	NR	2E-10				NR [5554549] (imputed)	N
1557	chr6	127439896	127439897	rs141783576	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Hip circumference	346,781 European ancestry individuals	NA	6q22.33	RSPO3	rs141783576-?	NR	5E-32				NR [5554549] (imputed)	N
1557	chr6	127440046	127440047	rs577721086	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6q22.33		rs577721086-T	0.950058	4E-8		0.0502854	[0.032-0.068] unit increase	NR [11722792] (imputed)	N
1557	chr6	127440046	127440047	rs577721086	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6q22.33		rs577721086-T	0.950058	4E-8		0.0500544	[0.032-0.068] unit increase	NR [11722792] (imputed)	N
1557	chr6	127440046	127440047	rs577721086	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	6q22.33		rs577721086-C	NR	8E-11		0.035	[0.024-0.046] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
1557	chr6	127440046	127440047	rs577721086	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	6q22.33		rs577721086-C	NR	6E-20		0.052	[0.041-0.063] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
1557	chr6	127440046	127440047	rs577721086	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls, 33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	6q22.33		rs577721086-C	NR	3E-9		0.0773	[0.052-0.103] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1557	chr6	127440046	127440047	rs577721086	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6q22.33	RSPO3	rs577721086-C	NR	3E-43		0.0993628	[0.085-0.113] unit increase	Affymetrix [323858] (imputed)	N
1557	chr6	127440046	127440047	rs577721086	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6q22.33	RSPO3	rs577721086-C	NR	1E-44		0.101146	[0.087-0.115] unit increase	Affymetrix [127266] (imputed)	N
1557	chr6	127440046	127440047	rs577721086	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6q22.33	RSPO3	rs577721086-C	NR	3E-10		0.0447724	[0.031-0.059] unit increase	Affymetrix [321114] (imputed)	N
1557	chr6	127440046	127440047	rs577721086	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6q22.33	RSPO3	rs577721086-C	NR	5E-67		0.112091	[0.099-0.125] unit decrease	Affymetrix [321016] (imputed)	N
1557	chr6	127440046	127440047	rs577721086	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	High density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	6q22.33	RSPO3	rs577721086-?		3E-8		0.0805	[0.052-0.109] unit decrease	Illumina [31500000] (imputed)	N
1557	chr6	127440046	127440047	rs577721086	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	6q22.33	NR	rs577721086-T	0.950007	3E-11		0.0196674	[0.014-0.026] unit increase	Affymetrix [16578495] (imputed)	N
1557	chr6	127440046	127440047	rs577721086	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	6q22.33	NR	rs577721086-T	0.949897	6E-17		0.0554554	[0.043-0.068] unit increase	Affymetrix [16580851] (imputed)	N
1557	chr6	127440046	127440047	rs577721086	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6q22.33	NR	rs577721086-?	NR	4E-286				Affymetrix [~ 8270000] (imputed)	N
1557	chr6	127440046	127440047	rs577721086	31589552	Lind L	2019-10-07	Metab Syndr Relat Disord	Genome-Wide Association Study of the Metabolic Syndrome in UK Biobank.	Metabolic syndrome	291,107 European ancestry individuals	NA	6q22.33	RSPO3	rs577721086-C	0.0509599	9E-10		0.0900937	[0.061-0.119] unit increase	Affymetrix [9463307] (imputed)	N
1557	chr6	127440046	127440047	rs577721086	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls	NA	6q22.33	LOC105377989, RSPO3	rs577721086-C	0.0483191	3E-9		0.07732185	[0.052-0.103] unit increase	Affymetrix [7288503] (imputed)	N
1557	chr6	127440046	127440047	rs577721086	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	6q22.33		rs577721086-?	NR	1E-274				NR [~ 8900000] (imputed)	N
1557	chr6	127440046	127440047	rs577721086	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	315,284 European ancestry male individuals	NA	6q22.33	NR	rs577721086-T	0.9525	7E-274		0.1661	[0.16-0.18] unit decrease	NR [~ 27400000] (imputed)	N
1557	chr6	127440046	127440047	rs577721086	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	316,772 European ancestry male individuals	NA	6q22.33	NR	rs577721086-T	0.9525	1E-170		0.1299	[0.12-0.14] unit decrease	NR [~ 27400000] (imputed)	N
1557	chr6	127440046	127440047	rs577721086	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-hip ratio	1,254 whole genome sequenced European ancestry individuals, 3,071 whole genome sequenced individuals, 29,723 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,053 Mylopotamos (founder/genetic isolate) individuals, 879 Pomak (founder/genetic isolate) individuals	206,053 European ancestry individuals	6q22.33	RSPO3	rs577721086-T	0.9384	4E-7		0.1019	[0.063-0.141] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1557	chr6	127440046	127440047	rs577721086	26733130	Styrkarsdottir U	2016-01-06	Nat Commun	Sequence variants in the PTCH1 gene associate with spine bone mineral density and osteoporotic fractures.	Bone mineral density (spine)	up to 20,132 European ancestry individuals	10,092 European and East Asian ancestry individuals	6q22.33	RSPO3	rs577721086-C	0.0675	7E-10		0.137	(0.094-0.181) unit increase	Illumina [19689642] (imputed)	N
1557	chr6	127440112	127440113	rs554129480	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6q22.33	NR	rs554129480-?	NR	8E-13				Affymetrix [~ 8270000] (imputed)	N
1557	chr6	127441344	127441345	rs184634289	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6q22.33	NR	rs184634289-?	NR	3E-51				Affymetrix [~ 8270000] (imputed)	N
1557	chr6	127441344	127441345	rs184634289	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6q22.33	NR	rs184634289-?	NR	2E-25				Affymetrix [~ 8270000] (imputed)	N
1557	chr6	127443091	127443092	rs9482770	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glutamine levels	114,751 European ancestry individuals	NA	6q22.33		rs9482770-T	0.551289	8E-15		0.0323379	[0.024-0.041] unit increase	NR [11722792] (imputed)	N
1557	chr6	127443091	127443092	rs9482770	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Pancreas volume	31,758 European ancestry individuals	NA	6q22.33	RSPO3	rs9482770-?	NR	3E-14		0.0571	NR L increase	Affymetrix [9390170] (imputed)	N
1557	chr6	127443091	127443092	rs9482770	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	6q22.33	RSPO3	rs9482770-T	0.550143	1E-280		0.0751932	[0.072-0.079] unit decrease	NR [13737936] (imputed)	N
1557	chr6	127443091	127443092	rs9482770	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	6q22.33		rs9482770-?	NR	1E-300				NR [~ 8900000] (imputed)	N
1557	chr6	127443135	127443135	rs71543110	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6q22.33		rs71543110-C,rs71543110-C	0.480483	9E-9		0.0225139	[0.015-0.03] unit decrease	NR [11722792] (imputed)	N
1557	chr6	127443135	127443135	rs71543110	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6q22.33		rs71543110-C,rs71543110-C	0.480483	9E-9		0.0225139	[0.015-0.03] unit decrease	NR [11722792] (imputed)	N
1557	chr6	127443135	127443135	rs71543110	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small VLDL	115,082 European ancestry individuals	NA	6q22.33		rs71543110-C,rs71543110-C	0.480483	1E-14		0.0309681	[0.023-0.039] unit decrease	NR [11722792] (imputed)	N
1557	chr6	127443135	127443135	rs71543110	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small VLDL	115,082 European ancestry individuals	NA	6q22.33		rs71543110-C,rs71543110-C	0.480483	1E-14		0.0309681	[0.023-0.039] unit decrease	NR [11722792] (imputed)	N
1557	chr6	127443135	127443135	rs71543110	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small HDL	115,082 European ancestry individuals	NA	6q22.33		rs71543110-C,rs71543110-C	0.480483	9E-15		0.0310396	[0.023-0.039] unit decrease	NR [11722792] (imputed)	N
1557	chr6	127443135	127443135	rs71543110	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small HDL	115,082 European ancestry individuals	NA	6q22.33		rs71543110-C,rs71543110-C	0.480483	9E-15		0.0310396	[0.023-0.039] unit decrease	NR [11722792] (imputed)	N
1557	chr6	127443135	127443135	rs71543110	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6q22.33		rs71543110-C,rs71543110-C	0.480483	2E-13		0.0291932	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
1557	chr6	127443135	127443135	rs71543110	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6q22.33		rs71543110-C,rs71543110-C	0.480483	2E-13		0.0291932	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
1557	chr6	127443135	127443135	rs71543110	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	6q22.33		rs71543110-C,rs71543110-C	0.480386	6E-10		0.024573	[0.017-0.032] unit increase	NR [11722792] (imputed)	N
1557	chr6	127443135	127443135	rs71543110	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	6q22.33		rs71543110-C,rs71543110-C	0.480386	6E-10		0.024573	[0.017-0.032] unit increase	NR [11722792] (imputed)	N
1557	chr6	127443135	127443135	rs71543110	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	6q22.33		rs71543110-C,rs71543110-C	0.480483	4E-13		0.0290537	[0.021-0.037] unit increase	NR [11722792] (imputed)	N
1557	chr6	127443135	127443135	rs71543110	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	6q22.33		rs71543110-C,rs71543110-C	0.480483	4E-13		0.0290537	[0.021-0.037] unit increase	NR [11722792] (imputed)	N
1557	chr6	127443135	127443135	rs71543110	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	6q22.33		rs71543110-C,rs71543110-C	0.480473	4E-9		0.0233954	[0.016-0.031] unit increase	NR [11722792] (imputed)	N
1557	chr6	127443135	127443135	rs71543110	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	6q22.33		rs71543110-C,rs71543110-C	0.480473	4E-9		0.0233954	[0.016-0.031] unit increase	NR [11722792] (imputed)	N
1557	chr6	127443135	127443135	rs71543110	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	6q22.33		rs71543110-C,rs71543110-C	0.480386	3E-10		0.0249034	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
1557	chr6	127443135	127443135	rs71543110	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	6q22.33		rs71543110-C,rs71543110-C	0.480386	3E-10		0.0249034	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
1557	chr6	127443135	127443135	rs71543110	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6q22.33		rs71543110-C,rs71543110-C	0.480483	7E-10		0.024039	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
1557	chr6	127443135	127443135	rs71543110	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6q22.33		rs71543110-C,rs71543110-C	0.480483	7E-10		0.024039	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
1557	chr6	127443135	127443135	rs71543110	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	6q22.33		rs71543110-C,rs71543110-C	0.480483	1E-14		0.0304676	[0.023-0.038] unit increase	NR [11722792] (imputed)	N
1557	chr6	127443135	127443135	rs71543110	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	6q22.33		rs71543110-C,rs71543110-C	0.480483	1E-14		0.0304676	[0.023-0.038] unit increase	NR [11722792] (imputed)	N
1557	chr6	127446609	127446610	rs9482771	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	6q22.33		rs9482771-C	NR	3E-17		0.0144	[0.011-0.018] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
1557	chr6	127446609	127446610	rs9482771	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	6q22.33		rs9482771-C	NR	3E-61		0.0314	[0.028-0.035] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
1557	chr6	127446609	127446610	rs9482771	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	6q22.33	RSPO3	rs9482771-C	0.493905	4E-24		0.02270656	[0.018-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1557	chr6	127446609	127446610	rs9482771	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	6q22.33	RSPO3	rs9482771-C	0.4939	6E-22		0.021624407	[0.017-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1557	chr6	127446609	127446610	rs9482771	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q22.33	NR	rs9482771-C	0.493432	9E-44				Affymetrix, Illumina [24653286] (imputed)	N
1557	chr6	127446609	127446610	rs9482771	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q22.33	NR	rs9482771-C	0.493151	2E-38				Affymetrix, Illumina [24558453] (imputed)	N
1557	chr6	127446789	127446790	rs9482772	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6q22.33		rs9482772-T	0.550755	1E-9		0.023853	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
1557	chr6	127446789	127446790	rs9482772	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6q22.33		rs9482772-T	0.550755	1E-8		0.0224029	[0.015-0.03] unit increase	NR [11722792] (imputed)	N
1557	chr6	127446789	127446790	rs9482772	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Osteoporosis	8,520 European ancestry cases, 479,981 European ancestry controls, 9,794 East Asian ancestry cases, 168,932 East Asian ancestry controls	NA	6q22.33		rs9482772-C	NR	2E-9		0.0681	[0.046-0.09] unit decrease	Affymetrix, Illumina [25844994] (imputed)	N
1557	chr6	127446789	127446790	rs9482772	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	161,168 British ancestry women	NA	6q22.33	NR	rs9482772-C	0.451	9E-12		0.02419	[0.017-0.031] unit increase	Affymetrix [10549349] (imputed)	N
1557	chr6	127448248	127448249	rs1936807	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6q22.33	RSPO3	rs1936807-G	0.518729	6E-12		0.015147798	[0.011-0.019] unit increase	Affymetrix [93095623] (imputed)	N
1557	chr6	127448248	127448249	rs1936807	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6q22.33	RSPO3	rs1936807-C		7E-24		0.022	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
1557	chr6	127448248	127448249	rs1936807	30670697	Kilpelainen TO	2019-01-22	Nat Commun	Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity.	Triglycerides x physical activity interaction (2df test)	7,294 African American inactive individuals, 12,832 African American active individuals, 1,352 Asian ancestry inactive individuals, 3,049 Asian ancestry active individuals, 20,622 European ancestry inactive individuals, 51,480 European ancestry active individuals, 2,166 Hispanic or Latin American inactive individuals, 3,486 Hispanic or Latin American active individuals	580 African American inactive individuals, 1,540 African American active individuals, 1,217 South African Black ancestry inactive individuals, 389 South African Black ancestry active individuals, 765 East Asian ancestry inactive individuals, 1,814 East Asian ancestry active individuals,  724 South Asian ancestry inactive individuals, 1,424 South Asian ancestry active individuals, 32,456 European ancestry inactive individuals, 49,510 European ancestry active individuals, 2,619 Hispanic inactive individuals, 8,803 Hispanic active individuals	6q22.33	NR	rs1936807-C	0.461	2E-12				Affymetrix, Illumina [at least 2500000] (imputed)	N
1557	chr6	127448248	127448249	rs1936807	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6q22.33	RSPO3	rs1936807-G	0.5103	2E-10	(EA)	0.0274	[0.019-0.036] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1557	chr6	127448248	127448249	rs1936807	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6q22.33	RSPO3	rs1936807-?	0.5103	1E-9	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1557	chr6	127448248	127448249	rs1936807	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	6q22.33	RSPO3	rs1936807-G	0.5182	5E-11		0.02339011	[0.016-0.03] unit increase	Affymetrix [~ 2500000] (imputed)	N
1557	chr6	127448248	127448249	rs1936807	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	6q22.33	RSPO3	rs1936807-G	0.5182	5E-12		0.02453562	[0.018-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
1557	chr6	127449245	127449246	rs1474696	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting insulin	151,013 European ancestry individuals	NA	6q22.33	RSPO3	rs1474696-A	0.4863	3E-16		0.0147	[0.011-0.018] unit decrease	Affymetrix, Illumina [32635793] (imputed)	N
1557	chr6	127451664	127451665	rs1936806	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	VLDL cholesterol levels	115,082 European ancestry individuals	NA	6q22.33		rs1936806-C	0.551547	5E-9		0.0242211	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
1557	chr6	127451664	127451665	rs1936806	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6q22.33		rs1936806-C	0.551547	9E-13		0.0286224	[0.021-0.036] unit decrease	NR [11722792] (imputed)	N
1557	chr6	127451664	127451665	rs1936806	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small VLDL	115,082 European ancestry individuals	NA	6q22.33		rs1936806-C	0.551547	4E-12		0.0285127	[0.02-0.037] unit decrease	NR [11722792] (imputed)	N
1557	chr6	127451664	127451665	rs1936806	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6q22.33		rs1936806-C	0.551547	1E-13		0.0296246	[0.022-0.037] unit decrease	NR [11722792] (imputed)	N
1557	chr6	127451664	127451665	rs1936806	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of apolipoprotein B to apolipoprotein A1 levels	115,082 European ancestry individuals	NA	6q22.33		rs1936806-C	0.551547	1E-9		0.0249375	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
1557	chr6	127451664	127451665	rs1936806	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small VLDL	115,082 European ancestry individuals	NA	6q22.33		rs1936806-C	0.551547	6E-9		0.0241128	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
1557	chr6	127451664	127451665	rs1936806	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium VLDL	115,082 European ancestry individuals	NA	6q22.33		rs1936806-C	0.551547	8E-9		0.0239259	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
1557	chr6	127451664	127451665	rs1936806	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6q22.33		rs1936806-C	0.551547	3E-13		0.0291451	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
1557	chr6	127451664	127451665	rs1936806	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small VLDL particles	115,082 European ancestry individuals	NA	6q22.33		rs1936806-C	0.551547	6E-13		0.0294729	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
1557	chr6	127451664	127451665	rs1936806	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium VLDL particles	115,082 European ancestry individuals	NA	6q22.33		rs1936806-C	0.551547	2E-9		0.0248022	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
1557	chr6	127451664	127451665	rs1936806	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small VLDL	115,082 European ancestry individuals	NA	6q22.33		rs1936806-C	0.551547	8E-9		0.0239664	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
1557	chr6	127451664	127451665	rs1936806	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6q22.33		rs1936806-C	0.551547	7E-14		0.0300335	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
1557	chr6	127451664	127451665	rs1936806	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6q22.33		rs1936806-C	0.551547	5E-14		0.0301333	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
1557	chr6	127451664	127451665	rs1936806	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	6q22.33	RSPO3	rs1936806-T	NR	7E-46		0.0418173	[0.036-0.048] unit decrease	Affymetrix [321788] (imputed)	N
1557	chr6	127451664	127451665	rs1936806	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6q22.33	RSPO3	rs1936806-T	NR	1E-29		0.0319715	[0.026-0.038] unit decrease	Affymetrix [321016] (imputed)	N
1557	chr6	127451664	127451665	rs1936806	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6q22.33	NR	rs1936806-?	NR	3E-79				Affymetrix [~ 8270000] (imputed)	N
1557	chr6	127451664	127451665	rs1936806	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Blood urea nitrogen levels	139,818 Japanese ancestry individuals	NA	6q22.33	RSPO3	rs1936806-?	NR	4E-16		0.02881	[0.022-0.036] unit increase novel	Illumina [6108953] (imputed)	N
1557	chr6	127452115	127452116	rs1936805	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	6q22.33	NR	rs1936805-T	0.53	2E-120		0.041	[0.038-0.044] unit increase	Affymetrix [2446094] (imputed)	N
1557	chr6	127452115	127452116	rs1936805	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	6q22.33	NR	rs1936805-T	0.53	5E-8				Affymetrix [2446094] (imputed)	N
1557	chr6	127452115	127452116	rs1936805	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI in non-smokers	75,379 European ancestry women, 45,811 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	6q22.33	RSPO3	rs1936805-T	0.518	7E-13		0.0194	[0.014-0.025] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1557	chr6	127452115	127452116	rs1936805	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI in non-smokers	75,379 European ancestry women, 45,811 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	6q22.33	RSPO3	rs1936805-T	0.518	7E-11	(women)	0.0216	[0.015-0.028] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1557	chr6	127452115	127452116	rs1936805	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (joint analysis main effects and smoking interaction)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	6q22.33	RSPO3	rs1936805-T	0.518	9E-11	(women)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1557	chr6	127452115	127452116	rs1936805	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (joint analysis main effects and smoking interaction)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	6q22.33	RSPO3	rs1936805-T	0.518	2E-12				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1557	chr6	127452115	127452116	rs1936805	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	6q22.33	RSPO3	rs1936805-T	0.518	6E-20	(women)	0.0415	[0.033-0.05] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1557	chr6	127452115	127452116	rs1936805	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	6q22.33	RSPO3	rs1936805-T	0.518	5E-7	(men)	0.026	[0.016-0.036] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1557	chr6	127452115	127452116	rs1936805	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	6q22.33	RSPO3	rs1936805-T	0.518	4E-23		0.0345	[0.028-0.041] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1557	chr6	127452115	127452116	rs1936805	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6q22.33	RSPO3	rs1936805-T	0.5166	8E-36		0.0414	[0.035-0.048] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1557	chr6	127452115	127452116	rs1936805	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6q22.33	RSPO3	rs1936805-T	0.5153	5E-31	(women)	0.0514	[0.043-0.06] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1557	chr6	127452115	127452116	rs1936805	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6q22.33	RSPO3	rs1936805-T	0.5147	8E-10	(men)	0.0292	[0.02-0.039] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1557	chr6	127452115	127452116	rs1936805	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6q22.33	RSPO3	rs1936805-T	0.5109	4E-35	(EA)	0.0425	[0.036-0.049] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1557	chr6	127452115	127452116	rs1936805	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6q22.33	RSPO3	rs1936805-T	0.5109	3E-10	(EA, men)	0.0308	[0.021-0.04] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1557	chr6	127452115	127452116	rs1936805	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6q22.33	RSPO3	rs1936805-T	0.5106	4E-30	(EA, women)	0.0517	[0.043-0.061] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1557	chr6	127452425	127452426	rs1967685	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6q22.33	RSPO3	rs1967685-C	NR	6E-93		0.0574693	[0.052-0.063] unit decrease	Affymetrix [319769] (imputed)	N
1557	chr6	127452580	127452581	rs2800710	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of chylomicrons and extremely large VLDL particles	115,082 European ancestry individuals	NA	6q22.33		rs2800710-T	0.481201	2E-13		0.0291556	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
1557	chr6	127452580	127452581	rs2800710	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of VLDL particles	115,082 European ancestry individuals	NA	6q22.33		rs2800710-T	0.481201	1E-10		0.0263177	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
1557	chr6	127452580	127452581	rs2800710	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6q22.33	RSPO3	rs2800710-T	NR	6E-95		0.0581123	[0.053-0.064] unit decrease	Affymetrix [319769] (imputed)	N
1557	chr6	127452638	127452639	rs9491696	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	148,767 East Asian ancestry individuals	NA	6q22.33		rs9491696-G	0.514516	5E-17		0.0281075	[0.022-0.035] unit increase	Illumina [13478792] (imputed)	N
1557	chr6	127452638	127452639	rs9491696	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	HDL cholesterol levels	up to 23,761 African ancestry individuals, 13,171 Asian ancestry individuals, up to 90,272 European ancestry individuals, 6,620 Hispanic individuals	NA	6q22.33		rs9491696-C	0.526	5E-7		0.0055	[0.0033-0.0077] unit increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1557	chr6	127452638	127452639	rs9491696	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	HDL cholesterol levels	34,930 East Asian ancestry individuals, 187,167 European ancestry individuals	8,741 Chinese ancestry individuals	6q22.33	RSPO3	rs9491696-C	0.547	1E-9	(Trans-ethnic initial)	0.0203	[0.014-0.027] unit increase (EA Beta values)	Affymetrix, Illumina [~ 1900000] (imputed)	N
1557	chr6	127452638	127452639	rs9491696	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-hip ratio	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6q22.33	RSPO3	rs9491696-C	0.5184	5E-30	(EA)	0.0379	[0.031-0.044] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1557	chr6	127452638	127452639	rs9491696	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-hip ratio	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6q22.33	RSPO3	rs9491696-C	0.5184	2E-10	(EA, men)	0.0302	[0.021-0.04] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1557	chr6	127452638	127452639	rs9491696	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-hip ratio	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6q22.33	RSPO3	rs9491696-C	0.5184	1E-23	(EA, women)	0.0441	[0.035-0.053] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1557	chr6	127452638	127452639	rs9491696	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6q22.33	RSPO3	rs9491696-C	0.5184	1E-10	(EA, women)	0.0292	[0.02-0.038] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1557	chr6	127452638	127452639	rs9491696	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6q22.33	RSPO3	rs9491696-C	0.5184	1E-10	(EA)	0.0228	[0.016-0.03] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1557	chr6	127452638	127452639	rs9491696	20935629	Heid IM	2010-10-10	Nat Genet	Meta-analysis identifies 13 new loci associated with waist-hip ratio and reveals sexual dimorphism in the genetic basis of fat distribution.	Waist-hip ratio	Up to 77,167 European ancestry individuals	Up to 113,636 European ancestry individuals	6q22.33	RSPO3	rs9491696-G	0.48	2E-40		0.04	[NR] unit increase	Affymetrix, Illumina, Perlegen [up to 2850269] (imputed)	N
1557	chr6	127452934	127452935	rs2745353	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	6q22.33		rs2745353-C	0.481218	5E-11		0.0259151	[0.018-0.034] unit increase	NR [11722792] (imputed)	N
1557	chr6	127452934	127452935	rs2745353	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large VLDL	115,082 European ancestry individuals	NA	6q22.33		rs2745353-C	0.481218	1E-14		0.0313221	[0.023-0.039] unit decrease	NR [11722792] (imputed)	N
1557	chr6	127452934	127452935	rs2745353	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for VLDL particles	115,082 European ancestry individuals	NA	6q22.33		rs2745353-C	0.481218	7E-16		0.0311419	[0.024-0.039] unit decrease	NR [11722792] (imputed)	N
1557	chr6	127452934	127452935	rs2745353	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting insulin	105,056 European ancestry individuals	NA	6q22.33	RSPO3	rs2745353-T	0.511044	5E-6		0.011284	[0.0064-0.0161] unit increase	Affymetrix, Illumina [8700000] (imputed)	N
1557	chr6	127452934	127452935	rs2745353	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	6q22.33	NR	rs2745353-T	0.517422	1E-36		0.02323	[0.02-0.027] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
1557	chr6	127452934	127452935	rs2745353	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q22.33	NR	rs2745353-T	0.529107	7E-12				Affymetrix, Illumina [23472807] (imputed)	N
1557	chr6	127452934	127452935	rs2745353	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	6q22.33	NR	rs2745353-T	0.517546	3E-14		0.014315	[0.011-0.018] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1557	chr6	127452934	127452935	rs2745353	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	6q22.33		rs2745353-?	NR	3E-35				NR [~ 8900000] (imputed)	N
1557	chr6	127452934	127452935	rs2745353	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in non-smokers	77,113 European ancestry women, 47,319 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	6q22.33	RSPO3	rs2745353-T	0.5202	4E-12		0.0265	[0.019-0.034] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1557	chr6	127452934	127452935	rs2745353	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in non-smokers	77,113 European ancestry women, 47,319 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	6q22.33	RSPO3	rs2745353-T	0.5202	3E-13	(women)	0.0355	[0.026-0.045] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1557	chr6	127452934	127452935	rs2745353	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	6q22.33	RSPO3	rs2745353-T	0.5202	3E-12	(women)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1557	chr6	127452934	127452935	rs2745353	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	6q22.33	RSPO3	rs2745353-T	0.5202	2E-11				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1557	chr6	127452934	127452935	rs2745353	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	6q22.33	RSPO3	rs2745353-T	0.5202	6E-12	(women)	0.03	[0.022-0.038] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1557	chr6	127452934	127452935	rs2745353	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	6q22.33	RSPO3	rs2745353-T	0.5202	6E-10		0.0215	[0.015-0.028] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1557	chr6	127452934	127452935	rs2745353	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex x age interaction (4df test)	up to 43,776 European ancestry men aged <50, up to 50,526 European ancestry women aged <50, up to 69,944 European ancestry men aged >50, up to 88,129 European ancestry women aged >50	NA	6q22.33	NR	rs2745353-T	0.513045531553055	4E-39				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1557	chr6	127452934	127452935	rs2745353	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	6q22.33	NR	rs2745353-T	0.513045531553055	7E-41		0.043643847	units increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1557	chr6	127452934	127452935	rs2745353	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6q22.33	RSPO3	rs2745353-T	0.5113	8E-19	(EA)	0.0293	[0.023-0.036] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1557	chr6	127452934	127452935	rs2745353	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6q22.33	RSPO3	rs2745353-T	0.5113	3E-6	(EA, men)	0.022	[0.013-0.031] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1557	chr6	127452934	127452935	rs2745353	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6q22.33	RSPO3	rs2745353-T	0.5113	1E-15	(EA,women)	0.0349	[0.026-0.044] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1557	chr6	127454892	127454893	rs72959041	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6q22.33		rs72959041-G	0.950386	3E-8		0.0508681	[0.033-0.069] unit decrease	NR [11722792] (imputed)	N
1557	chr6	127454892	127454893	rs72959041	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	6q22.33		rs72959041-G	0.950392	2E-14		0.0695217	[0.052-0.087] unit decrease	NR [11722792] (imputed)	N
1557	chr6	127454892	127454893	rs72959041	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	6q22.33		rs72959041-G	0.950386	6E-12		0.0632303	[0.045-0.081] unit increase	NR [11722792] (imputed)	N
1557	chr6	127454892	127454893	rs72959041	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	6q22.33		rs72959041-G	0.950386	2E-11		0.0618334	[0.044-0.08] unit increase	NR [11722792] (imputed)	N
1557	chr6	127454892	127454893	rs72959041	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	6q22.33		rs72959041-G	0.950386	8E-9		0.0519779	[0.034-0.07] unit increase	NR [11722792] (imputed)	N
1557	chr6	127454892	127454893	rs72959041	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large HDL particles	115,082 European ancestry individuals	NA	6q22.33		rs72959041-G	0.950386	4E-9		0.0511233	[0.034-0.068] unit increase	NR [11722792] (imputed)	N
1557	chr6	127454892	127454893	rs72959041	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6q22.33		rs72959041-G	0.950386	8E-11		0.058683	[0.041-0.076] unit increase	NR [11722792] (imputed)	N
1557	chr6	127454892	127454893	rs72959041	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	6q22.33		rs72959041-G	0.950386	3E-12		0.0602936	[0.043-0.077] unit increase	NR [11722792] (imputed)	N
1557	chr6	127454892	127454893	rs72959041	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	6q22.33		rs72959041-G	0.950386	8E-12		0.0620777	[0.044-0.08] unit increase	NR [11722792] (imputed)	N
1557	chr6	127454892	127454893	rs72959041	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	6q22.33		rs72959041-G	0.950386	2E-11		0.0587978	[0.042-0.076] unit increase	NR [11722792] (imputed)	N
1557	chr6	127454892	127454893	rs72959041	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	6q22.33		rs72959041-A	NR	2E-18		0.0462	[0.036-0.057] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
1557	chr6	127454892	127454893	rs72959041	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Aspartate aminotransferase levels	386,570 British ancestry individuals, 10,617 Asian or Asian British individuals, 7,426 Black or Black British individuals, 2,321 Chinese ancestry individuals	NA	6q22.33	RSPO3	rs72959041-?	NR	2E-9		0.0033	[0.0019-0.0047] unit increase	Affymetrix [21347608] (imputed)	N
1557	chr6	127454892	127454893	rs72959041	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Alanine aminotransferase levels	387,859 British ancestry individuals, 10,635 Asian or Asian British individuals, 7,468 Black or Black British individuals, 2,338 Chinese ancestry individuals	NA	6q22.33	RSPO3	rs72959041-?	NR	5E-20		0.008	[0.006-0.01] unit increase	Affymetrix [21347608] (imputed)	N
1557	chr6	127454892	127454893	rs72959041	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6q22.33	RSPO3	rs72959041-A	NR	4E-236		0.213794	[0.2-0.23] unit increase	Affymetrix [319769] (imputed)	N
1557	chr6	127454892	127454893	rs72959041	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6q22.33	RSPO3	rs72959041-A	NR	2E-243		0.217256	[0.2-0.23] unit increase	Affymetrix [319769] (imputed)	N
1557	chr6	127454892	127454893	rs72959041	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6q22.33	RSPO3	rs72959041-A	NR	1E-125		0.156948	[0.14-0.17] unit increase	Affymetrix [321114] (imputed)	N
1557	chr6	127454892	127454893	rs72959041	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	6q22.33	RSPO3	rs72959041-A	NR	6E-119		0.157312	[0.14-0.17] unit decrease	Affymetrix [321788] (imputed)	N
1557	chr6	127454892	127454893	rs72959041	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	6q22.33	RSPO3	rs72959041-A	NR	1E-39		0.0978157	[0.083-0.112] unit decrease	Affymetrix [323858] (imputed)	N
1557	chr6	127454892	127454893	rs72959041	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6q22.33	RSPO3	rs72959041-A	NR	8E-122		0.154774	[0.14-0.17] unit increase	Affymetrix [321169] (imputed)	N
1557	chr6	127454892	127454893	rs72959041	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Triglycerides	429,011 European ancestry individuals	NA	6q22.33		rs72959041-G	0.95	6E-43		0.063	mmol/L decrease	NR [NR] (imputed)	N
1557	chr6	127454892	127454893	rs72959041	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	6q22.33		rs72959041-G	0.95	2E-10				NR [NR] (imputed)	N
1557	chr6	127454892	127454893	rs72959041	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	High density lipoprotein cholesterol levels	392,965 European ancestry individuals	NA	6q22.33		rs72959041-G	0.95	9E-33		0.05	mmol/L increase	NR [NR] (imputed)	N
1557	chr6	127454892	127454893	rs72959041	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	6q22.33		rs72959041-G	0.95	2E-12		0.023	% increase	NR [NR] (imputed)	N
1557	chr6	127454892	127454893	rs72959041	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Aspartate aminotransferase levels	424,778 European ancestry individuals	NA	6q22.33		rs72959041-G	0.95	4E-9		0.029	U/L decrease	NR [NR] (imputed)	N
1557	chr6	127454892	127454893	rs72959041	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Alanine aminotransferase levels	429,203 European ancestry individuals	NA	6q22.33		rs72959041-G	0.95	9E-16		0.038	U/L decrease	NR [NR] (imputed)	N
1557	chr6	127454892	127454893	rs72959041	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	6q22.33	NR	rs72959041-A	NR	7E-11		0.0384	[0.027-0.05] unit decrease	Affymetrix [9000000] (imputed)	N
1557	chr6	127454892	127454893	rs72959041	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	6q22.33	RSPO3	rs72959041-A	0.0494	2E-18		0.0384	[0.03-0.047] unit increase	Affymetrix [18391927] (imputed)	N
1557	chr6	127454892	127454893	rs72959041	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	6q22.33	RSPO3	rs72959041-A	0.049351	2E-9		0.031157587	[0.021-0.041] unit decrease	Affymetrix [93095623] (imputed)	N
1557	chr6	127454892	127454893	rs72959041	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	6q22.33	RSPO3	rs72959041-A	0.049341	6E-9		0.030104952	[0.02-0.04] unit increase	Affymetrix [93095623] (imputed)	N
1557	chr6	127454892	127454893	rs72959041	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	6q22.33	RSPO3	rs72959041-G	0.950888	2E-26		0.0474304	[0.039-0.056] unit increase	Affymetrix [NR] (imputed)	N
1557	chr6	127454892	127454893	rs72959041	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	6q22.33	RSPO3	rs72959041-G	0.950874	5E-15		0.0359893	[0.027-0.045] unit increase	Affymetrix [NR] (imputed)	N
1557	chr6	127454892	127454893	rs72959041	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	6q22.33	RSPO3	rs72959041-?	NR	9E-27		0.065	[0.054-0.076] unit increase	Affymetrix [5701386] (imputed)	N
1557	chr6	127454892	127454893	rs72959041	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	6q22.33	NR	rs72959041-G	0.950065	8E-29		0.053184	[0.044-0.063] unit increase	NR [NR]	N
1557	chr6	127454892	127454893	rs72959041	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6q22.33	NR	rs72959041-?	NR	5E-126				Affymetrix [~ 8270000] (imputed)	N
1557	chr6	127454892	127454893	rs72959041	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	6q22.33		rs72959041-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1557	chr6	127454892	127454893	rs72959041	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	6q22.33	NR	rs72959041-A	0.0417	2E-293		0.1624	[0.15-0.17] unit increase	NR [~ 27400000] (imputed)	N
1557	chr6	127454892	127454893	rs72959041	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	6q22.33	NA	rs72959041-A	0.0409	5E-183		0.126	[0.12-0.13] unit increase	NR [~ 27400000] (imputed)	N
1557	chr6	127454892	127454893	rs72959041	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	6q22.33	NR	rs72959041-A	0.0409	5E-183		0.126	[0.12-0.13] unit increase	NR [~ 27400000] (imputed)	N
1557	chr6	127454892	127454893	rs72959041	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6q22.33	NR	rs72959041-G	NR	1E-10		0.058	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1557	chr6	127454892	127454893	rs72959041	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6q22.33	NR	rs72959041-G	0.942	4E-10	(EA)	0.058	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1557	chr6	127454892	127454893	rs72959041	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6q22.33	NR	rs72959041-G	NR	2E-11		0.056	unit increase	Affymetrix [at least 7091467] (imputed)	N
1557	chr6	127454892	127454893	rs72959041	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6q22.33	NR	rs72959041-G	0.942	1E-10	(EA)	0.054	unit increase	Affymetrix [at least 7091467] (imputed)	N
1557	chr6	127454892	127454893	rs72959041	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-to-hip ratio adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,049 whole genome sequenced individuals, 29,518 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,001 Mylopotamos (founder/genetic isolate) individuals, 867 Pomak (founder/genetic isolate) individuals	206,045 European ancestry individuals	6q22.33	RSPO3	rs72959041-A	0.0602	5E-13		0.1312	[0.096-0.167] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1557	chr6	127454892	127454893	rs72959041	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	6q22.33	RSPO3	rs72959041-A	0.056	6E-8		0.0895	[0.057-0.122] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1557	chr6	127454892	127454893	rs72959041	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	Waist-to-hip ratio adjusted for body mass index	19,695 British ancestry individuals from 6863 families.	NA	6q22.33	RSPO3	rs72959041-A	0.0566	3E-14		0.18748549	[0.14-0.24] unit increase	Illumina [24111857] (imputed)	N
1557	chr6	127454892	127454893	rs72959041	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	Triglycerides	up to 62,166 European ancestry individuals	NA	6q22.33	RSPO3	rs72959041-A	0.06	5E-8		0.075	[0.048-0.102] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
1557	chr6	127454892	127454893	rs72959041	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6q22.33	RSPO3	rs72959041-A	0.0578	2E-6	(EA, men)	0.0819	[0.048-0.116] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1557	chr6	127454892	127454893	rs72959041	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6q22.33	RSPO3	rs72959041-A	0.0575	3E-22	(EA)	0.1252	[0.1-0.15] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1557	chr6	127454892	127454893	rs72959041	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6q22.33	RSPO3	rs72959041-A	0.0571	2E-19	(EA, women)	0.1755	[0.14-0.21] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1557	chr6	127454892	127454893	rs72959041	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6q22.33	RSPO3	rs72959041-A	0.057	1E-6	(men)	0.0834	[0.05-0.117] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1557	chr6	127454892	127454893	rs72959041	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6q22.33	RSPO3	rs72959041-A	0.0561	7E-23		0.126	[0.1-0.15] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1557	chr6	127454892	127454893	rs72959041	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6q22.33	RSPO3	rs72959041-A	0.0554	3E-19	(women)	0.1733	[0.14-0.21] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1557	chr6	127455028	127455029	rs2186037	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	6q22.33		rs2186037-A	0.481206	4E-15		0.0305728	[0.023-0.038] unit decrease	NR [11722792] (imputed)	N
1557	chr6	127455028	127455029	rs2186037	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large VLDL	115,082 European ancestry individuals	NA	6q22.33		rs2186037-A	0.481206	4E-17		0.0332429	[0.026-0.041] unit decrease	NR [11722792] (imputed)	N
1557	chr6	127455028	127455029	rs2186037	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium VLDL	115,082 European ancestry individuals	NA	6q22.33		rs2186037-A	0.481206	5E-16		0.0325721	[0.025-0.04] unit decrease	NR [11722792] (imputed)	N
1557	chr6	127455028	127455029	rs2186037	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large VLDL	115,082 European ancestry individuals	NA	6q22.33		rs2186037-A	0.481206	2E-17		0.0337285	[0.026-0.042] unit decrease	NR [11722792] (imputed)	N
1557	chr6	127455028	127455029	rs2186037	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in VLDL	115,082 European ancestry individuals	NA	6q22.33		rs2186037-A	0.481206	3E-16		0.0324131	[0.025-0.04] unit decrease	NR [11722792] (imputed)	N
1557	chr6	127455028	127455029	rs2186037	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total triglycerides levels	115,082 European ancestry individuals	NA	6q22.33		rs2186037-A	0.481206	3E-15		0.0315055	[0.024-0.039] unit decrease	NR [11722792] (imputed)	N
1557	chr6	127455028	127455029	rs2186037	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large VLDL	115,082 European ancestry individuals	NA	6q22.33		rs2186037-A	0.481206	6E-17		0.0332724	[0.025-0.041] unit decrease	NR [11722792] (imputed)	N
1557	chr6	127455028	127455029	rs2186037	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium VLDL	115,082 European ancestry individuals	NA	6q22.33		rs2186037-A	0.481206	1E-11		0.0277966	[0.02-0.036] unit decrease	NR [11722792] (imputed)	N
1557	chr6	127455028	127455029	rs2186037	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large VLDL	115,082 European ancestry individuals	NA	6q22.33		rs2186037-A	0.481206	2E-17		0.0339381	[0.026-0.042] unit decrease	NR [11722792] (imputed)	N
1557	chr6	127455028	127455029	rs2186037	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in VLDL	115,082 European ancestry individuals	NA	6q22.33		rs2186037-A	0.481206	2E-14		0.0309594	[0.023-0.039] unit decrease	NR [11722792] (imputed)	N
1557	chr6	127455028	127455029	rs2186037	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	6q22.33		rs2186037-A	0.48122	9E-19		0.0339224	[0.026-0.041] unit decrease	NR [11722792] (imputed)	N
1557	chr6	127455028	127455029	rs2186037	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	6q22.33		rs2186037-A	0.481206	3E-11		0.0261051	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
1557	chr6	127455028	127455029	rs2186037	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large VLDL	115,082 European ancestry individuals	NA	6q22.33		rs2186037-A	0.481206	8E-17		0.0332072	[0.025-0.041] unit decrease	NR [11722792] (imputed)	N
1557	chr6	127455028	127455029	rs2186037	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large VLDL	115,082 European ancestry individuals	NA	6q22.33		rs2186037-A	0.481206	1E-17		0.0341816	[0.026-0.042] unit decrease	NR [11722792] (imputed)	N
1557	chr6	127455028	127455029	rs2186037	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in VLDL	115,082 European ancestry individuals	NA	6q22.33		rs2186037-A	0.481206	6E-13		0.0293787	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
1557	chr6	127455028	127455029	rs2186037	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	6q22.33		rs2186037-A	0.481206	3E-16		0.0327353	[0.025-0.041] unit decrease	NR [11722792] (imputed)	N
1557	chr6	127455028	127455029	rs2186037	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	6q22.33		rs2186037-A	0.481206	3E-17		0.0338221	[0.026-0.042] unit decrease	NR [11722792] (imputed)	N
1557	chr6	127455028	127455029	rs2186037	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in VLDL	115,082 European ancestry individuals	NA	6q22.33		rs2186037-A	0.481206	1E-11		0.0278143	[0.02-0.036] unit decrease	NR [11722792] (imputed)	N
1557	chr6	127455028	127455029	rs2186037	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large VLDL particles	115,082 European ancestry individuals	NA	6q22.33		rs2186037-A	0.481206	3E-17		0.0335368	[0.026-0.041] unit decrease	NR [11722792] (imputed)	N
1557	chr6	127455028	127455029	rs2186037	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large VLDL particles	115,082 European ancestry individuals	NA	6q22.33		rs2186037-A	0.481206	3E-17		0.0337345	[0.026-0.042] unit decrease	NR [11722792] (imputed)	N
1557	chr6	127455028	127455029	rs2186037	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large VLDL	115,082 European ancestry individuals	NA	6q22.33		rs2186037-A	0.481206	2E-13		0.030012	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
1557	chr6	127455028	127455029	rs2186037	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	6q22.33		rs2186037-A	0.481206	9E-16		0.0324614	[0.025-0.04] unit decrease	NR [11722792] (imputed)	N
1557	chr6	127455028	127455029	rs2186037	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	6q22.33		rs2186037-A	0.481206	1E-15		0.0323143	[0.024-0.04] unit decrease	NR [11722792] (imputed)	N
1557	chr6	127455028	127455029	rs2186037	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	6q22.33	RSPO3	rs2186037-G	0.518515	5E-22		0.021210007	[0.017-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1557	chr6	127455137	127455138	rs7766106	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	6q22.33	NR	rs7766106-T	0.490926	4E-46		0.027194	[0.023-0.031] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
1557	chr6	127455137	127455138	rs7766106	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	6q22.33	NR	rs7766106-T	0.4909	3E-40		0.02449	[0.021-0.028] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
1557	chr6	127455137	127455138	rs7766106	31372216	Haaland OA	2019-06-24	F1000Res	A genome-wide scan of cleft lip triads identifies parent-of-origin interaction effects between ANK3 and maternal smoking, and between ARHGEF10 and alcohol consumption.	Cleft lip with or without cleft palate x maternal periconceptional vitamin use interaction (parent of origin effect)	825 European ancestry case-parent duos or trios, 1,024 Asian ancestry case-parent duos or trios, 59 case-parent duos or trios	NA	6q22.33	RSPO3	rs7766106-?	NR	6E-6	(EA)	0.31	[0.19-0.52]	NR [341191]	N
1557	chr6	127455137	127455138	rs7766106	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6q22.33	RSPO3	rs7766106-T	0.4821	6E-26	(women)	0.0506	[0.041-0.06] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1557	chr6	127455137	127455138	rs7766106	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6q22.33	RSPO3	rs7766106-T	0.4821	6E-24	(EA, women)	0.0518	[0.042-0.062] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1557	chr6	127455137	127455138	rs7766106	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6q22.33	RSPO3	rs7766106-T	0.4821	3E-7	(EA, men)	0.03	[0.019-0.041] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1557	chr6	127455137	127455138	rs7766106	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6q22.33	RSPO3	rs7766106-T	0.4821	2E-6	(men)	0.0261	[0.015-0.037] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1557	chr6	127455137	127455138	rs7766106	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6q22.33	RSPO3	rs7766106-T	0.4821	2E-26		0.0398	[0.032-0.047] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1557	chr6	127455137	127455138	rs7766106	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6q22.33	RSPO3	rs7766106-T	0.4821	1E-26	(EA)	0.0424	[0.035-0.05] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1557	chr6	127455137	127455138	rs7766106	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6q22.33	RSPO3	rs7766106-T	0.4837	2E-23	(women)	0.0581	[0.047-0.069] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1557	chr6	127455137	127455138	rs7766106	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6q22.33	RSPO3	rs7766106-T	0.4837	2E-23	(EA, women)	0.0581	[0.047-0.069] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1557	chr6	127455137	127455138	rs7766106	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6q22.33	RSPO3	rs7766106-T	0.4821	3E-24	(EA)	0.0458	[0.037-0.055] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1557	chr6	127455137	127455138	rs7766106	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6q22.33	RSPO3	rs7766106-T	0.4821	3E-24		0.0458	[0.037-0.055] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1557	chr6	127455137	127455138	rs7766106	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6q22.33	RSPO3	rs7766106-T	0.4799	4E-6	(men)	0.0303	[0.017-0.043] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1557	chr6	127455137	127455138	rs7766106	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6q22.33	RSPO3	rs7766106-T	0.4799	4E-6	(EA, men)	0.0303	[0.017-0.043] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1557	chr6	127455137	127455138	rs7766106	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6q22.33	RSPO3	rs7766106-?	0.4821	4E-26	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1557	chr6	127455137	127455138	rs7766106	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6q22.33	RSPO3	rs7766106-?	0.4821	4E-26				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1557	chr6	127455137	127455138	rs7766106	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6q22.33	RSPO3	rs7766106-?	0.4821	2E-6	(men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1557	chr6	127455137	127455138	rs7766106	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6q22.33	RSPO3	rs7766106-?	0.4821	2E-6	(EA, men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1557	chr6	127455137	127455138	rs7766106	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6q22.33	RSPO3	rs7766106-?	0.4821	2E-24	(women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1557	chr6	127455137	127455138	rs7766106	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6q22.33	RSPO3	rs7766106-?	0.4821	2E-24	(EA, women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1557	chr6	127455137	127455138	rs7766106	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6q22.33	RSPO3	rs7766106-T	0.4766	1E-9		0.0213	[0.014-0.028] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1557	chr6	127455137	127455138	rs7766106	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6q22.33	RSPO3	rs7766106-T	0.4766	1E-9		0.0249	[0.017-0.033] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1557	chr6	127455137	127455138	rs7766106	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6q22.33	RSPO3	rs7766106-?	0.4766	2E-9				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1557	chr6	127455137	127455138	rs7766106	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI in non-smokers	75,379 European ancestry women, 45,811 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	6q22.33	RSPO3	rs7766106-T	0.489	5E-34		0.028	[0.024-0.032] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1557	chr6	127455137	127455138	rs7766106	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (joint analysis main effects and smoking interaction)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	6q22.33	RSPO3	rs7766106-T	0.486	3E-34				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1557	chr6	127455137	127455138	rs7766106	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	6q22.33	RSPO3	rs7766106-T	0.486	4E-51		0.039	[0.033-0.045] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1557	chr6	127455820	127455821	rs2489623	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6q22.33	RSPO3	rs2489623-C	0.535	4E-28	(R-spondin-3, RSPO3.13094.75.3)	0.27	[0.23-0.31] unit increase	Affymetrix [10572788] (imputed)	N
1557	chr6	127455820	127455821	rs2489623	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6q22.33	RSPO3	rs2489623-A	0.476	3E-8	(EA)	0.0187	[0.012-0.025] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1557	chr6	127456121	127456122	rs9491697	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in HDL	115,082 European ancestry individuals	NA	6q22.33		rs9491697-A	0.536383	3E-10		0.0235951	[0.016-0.031] unit increase	NR [11722792] (imputed)	N
1557	chr6	127456121	127456122	rs9491697	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	HDL cholesterol levels	115,082 European ancestry individuals	NA	6q22.33		rs9491697-A	0.536383	2E-13		0.0273328	[0.02-0.035] unit increase	NR [11722792] (imputed)	N
1557	chr6	127456121	127456122	rs9491697	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	6q22.33		rs9491697-A	0.536383	3E-9		0.022414	[0.015-0.03] unit increase	NR [11722792] (imputed)	N
1557	chr6	127456121	127456122	rs9491697	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium HDL particles	115,082 European ancestry individuals	NA	6q22.33		rs9491697-A	0.536383	9E-9		0.0220248	[0.015-0.03] unit increase	NR [11722792] (imputed)	N
1557	chr6	127456121	127456122	rs9491697	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium HDL	115,082 European ancestry individuals	NA	6q22.33		rs9491697-A	0.536383	1E-11		0.026064	[0.019-0.034] unit increase	NR [11722792] (imputed)	N
1557	chr6	127456121	127456122	rs9491697	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	6q22.33		rs9491697-A	0.536383	4E-16		0.0299395	[0.023-0.037] unit increase	NR [11722792] (imputed)	N
1557	chr6	127456121	127456122	rs9491697	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	6q22.33		rs9491697-A	0.536383	4E-14		0.0282921	[0.021-0.036] unit increase	NR [11722792] (imputed)	N
1557	chr6	127456121	127456122	rs9491697	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	6q22.33		rs9491697-A	0.536383	3E-11		0.0254318	[0.018-0.033] unit increase	NR [11722792] (imputed)	N
1557	chr6	127456121	127456122	rs9491697	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	6q22.33		rs9491697-A	0.536383	1E-15		0.0293913	[0.022-0.037] unit increase	NR [11722792] (imputed)	N
1557	chr6	127456121	127456122	rs9491697	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	6q22.33	RSPO3	rs9491697-A	0.536994	9E-18		0.0179089	[0.014-0.022] unit decrease	Affymetrix [NR] (imputed)	N
1557	chr6	127456121	127456122	rs9491697	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	6q22.33	RSPO3	rs9491697-?		2E-9				Illumina [9560910] (imputed)	N
1557	chr6	127456121	127456122	rs9491697	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Crohn's disease	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls	6q22.33	intergenic	rs9491697-G	0.439	4E-10		1.077	[1.042-1.112]	Affymetrix, Illumina [1230000] (imputed)	N
1557	chr6	127457259	127457260	rs2503322	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	6q22.33	NR	rs2503322-G	0.54	6E-8	(EA)	1.0676966	[1.04-1.09]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1557	chr6	127458307	127458308	rs2489625	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RSPO3	5,363 Icelandic ancestry individuals	NA	6q22.33		rs2489625-G	0.3989	1E-40		0.238032	[0.2-0.27] unit decrease	Illumina [7506463] (imputed)	N
1557	chr6	127459551	127459552	rs9482773	33097703	Surakka I	2020-10-23	Nat Commun	MEPE loss-of-function variant associates with decreased bone mineral density and increased fracture risk.	Ultradistal forearm bone mineral density	21,907 European ancestry individuals	NA	6q22.33	NR	rs9482773-?	0.524023175239563	3E-10		0.06667826	[0.046-0.087] SD units decrease	Illumina [11603265] (imputed)	N
1557	chr6	127459551	127459552	rs9482773	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	6q22.33	RSPO3	rs9482773-C	0.4777	3E-34		0.0083	[0.0069-0.0097] unit increase	Affymetrix, Illumina [8176554] (imputed)	N
1557	chr6	127459551	127459552	rs9482773	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6q22.33		rs9482773-?	NR	1E-300		0.0825259	[0.078-0.087] unit decrease	Affymetrix [20259828] (imputed)	N
1557	chr6	127459927	127459928	rs569086022	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6q22.33	NR	rs569086022-?	NR	4E-15				Affymetrix [~ 8270000] (imputed)	N
1557	chr6	127460348	127460349	rs1892171	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6q22.33	RSPO3	rs1892171-A	0.60171875	4E-22	(RSPO3, 13094_75_3)	0.2323449	[0.19-0.28] unit increase	Illumina [> 1000000] (imputed)	N
1557	chr6	127463375	127463376	rs2503107	30808845	Thio CHL	2019-02-26	Am J Nephrol	Genome-Wide Association Scan of Serum Urea in European Populations Identifies Two Novel Loci.	Serum urea levels	13,312 European ancestry individuals	7,379 European ancestry individuals	6q22.33	RSPO3	rs2503107-C	0.449	5E-7		0.065	[0.04-0.09] mmol/L decrease	Illumina [1990000] (imputed)	N
1557	chr6	127463644	127463645	rs9285458	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RSPO3	5,363 Icelandic ancestry individuals	NA	6q22.33		rs9285458-G	0.4433	4E-84		0.328224	[0.3-0.36] unit decrease	Illumina [7506463] (imputed)	N
1557	chr6	127465107	127465108	rs77495054	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6q22.33	RSPO3	rs77495054-C	NR	1E-25		0.0885964	[0.072-0.105] unit increase	Affymetrix [319769] (imputed)	N
1557	chr6	127465107	127465108	rs77495054	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6q22.33	RSPO3	rs77495054-C	NR	1E-26		0.0902398	[0.074-0.107] unit increase	Affymetrix [319769] (imputed)	N
1557	chr6	127465107	127465108	rs77495054	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6q22.33	RSPO3	rs77495054-C	NR	6E-16		0.0689806	[0.052-0.086] unit increase	Affymetrix [321114] (imputed)	N
1557	chr6	127465107	127465108	rs77495054	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	6q22.33	RSPO3	rs77495054-C	NR	9E-10		0.053916	[0.037-0.071] unit decrease	Affymetrix [321788] (imputed)	N
1557	chr6	127465107	127465108	rs77495054	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6q22.33	RSPO3	rs77495054-C	NR	1E-16		0.0708921	[0.054-0.088] unit increase	Affymetrix [321169] (imputed)	N
1557	chr6	127465107	127465108	rs77495054	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	6q22.33	RSPO3	rs77495054-T	0.973098	2E-33		0.0671382	[0.056-0.078] unit decrease	NR [13737936] (imputed)	N
1557	chr6	127465107	127465108	rs77495054	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	6q22.33		rs77495054-?	NR	1E-30				NR [~ 8900000] (imputed)	N
1557	chr6	127468187	127468188	rs2503111	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6q22.33	RSPO3	rs2503111-A	0.5446	2E-10	(EA)	0.0254	[0.018-0.033] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1557	chr6	127468273	127468274	rs7741021	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in HDL	115,082 European ancestry individuals	NA	6q22.33		rs7741021-A	0.522746	2E-9		0.0224688	[0.015-0.03] unit increase	NR [11722792] (imputed)	N
1557	chr6	127468273	127468274	rs7741021	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein A1 levels	115,082 European ancestry individuals	NA	6q22.33		rs7741021-A	0.522746	3E-8		0.0209499	[0.014-0.028] unit increase	NR [11722792] (imputed)	N
1557	chr6	127468273	127468274	rs7741021	33097703	Surakka I	2020-10-23	Nat Commun	MEPE loss-of-function variant associates with decreased bone mineral density and increased fracture risk.	Ultradistal forearm bone mineral density	21,907 European ancestry individuals	NA	6q22.33	NR	rs7741021-C	0.474	2E-10		0.068	[0.046-0.09] SD units increase	Illumina [11603265] (imputed)	N
1557	chr6	127468273	127468274	rs7741021	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Fractures	53,184 British ancestry cases, 373,611 British ancestry controls	367,900 European ancestry cases, 363,919 European ancestry controls	6q22.33	RSPO3	rs7741021-A	0.5346	9E-65		0.0508	[0.045-0.057] unit increase	NR [13977204] (imputed)	N
1557	chr6	127468273	127468274	rs7741021	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6q22.33	RSPO3	rs7741021-?	NR	2E-369		0.0825339	[0.078-0.087] unit decrease	Affymetrix [20259828] (imputed)	N
1557	chr6	127468273	127468274	rs7741021	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	6q22.33	RSPO3	rs7741021-A	0.524243	6E-50	(men)	0.0730926	[0.063-0.083] unit decrease	NR [17166351] (imputed)	N
1557	chr6	127468273	127468274	rs7741021	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	6q22.33	RSPO3	rs7741021-A	0.523733	2E-140		0.0818277	[0.075-0.088] unit decrease	NR [17166351] (imputed)	N
1557	chr6	127468273	127468274	rs7741021	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	6q22.33	RSPO3	rs7741021-A	0.523288	1E-91	(women)	0.0914244	[0.082-0.1] unit decrease	NR [17166351] (imputed)	N
1557	chr6	127468273	127468274	rs7741021	28472463	Mullin BH	2017-05-04	Hum Mol Genet	Genome-wide association study meta-analysis for quantitative ultrasound parameters of bone identifies five novel loci for broadband ultrasound attenuation.	Bone ultrasound measurement (velocity of sound)	1,268 whole genome sequenced European ancestry women, 8,880 European ancestry women, 6,479 European ancestry men	NA	6q22.33	RSPO3	rs7741021-C	0.48	6E-13		0.08	[0.06-0.1] unit increase	Illumina [11973598] (imputed)	N
1557	chr6	127468273	127468274	rs7741021	28472463	Mullin BH	2017-05-04	Hum Mol Genet	Genome-wide association study meta-analysis for quantitative ultrasound parameters of bone identifies five novel loci for broadband ultrasound attenuation.	Bone ultrasound measurement (velocity of sound)	1,268 whole genome sequenced European ancestry women, 8,880 European ancestry women, 6,479 European ancestry men	NA	6q22.33	RSPO3	rs7741021-C	0.48	3E-7	(male)	0.09	[0.051-0.129] unit increase	Illumina [11973598] (imputed)	N
1557	chr6	127468273	127468274	rs7741021	28472463	Mullin BH	2017-05-04	Hum Mol Genet	Genome-wide association study meta-analysis for quantitative ultrasound parameters of bone identifies five novel loci for broadband ultrasound attenuation.	Bone ultrasound measurement (velocity of sound)	1,268 whole genome sequenced European ancestry women, 8,880 European ancestry women, 6,479 European ancestry men	NA	6q22.33	RSPO3	rs7741021-C	0.48	2E-7	(female)	0.08	[0.06-0.1] unit increase	Illumina [11973598] (imputed)	N
1557	chr6	127468273	127468274	rs7741021	28472463	Mullin BH	2017-05-04	Hum Mol Genet	Genome-wide association study meta-analysis for quantitative ultrasound parameters of bone identifies five novel loci for broadband ultrasound attenuation.	Bone ultrasound measurement (broadband ultrasound attenuation)	1,268 whole genome sequenced European ancestry women, 8,880 European ancestry women, 6,479 European ancestry men	NA	6q22.33	RSPO3	rs7741021-C	0.48	5E-12		0.08	[0.06-0.1] unit increase	Illumina [11973598] (imputed)	N
1557	chr6	127468273	127468274	rs7741021	24430505	Moayyeri A	2014-01-14	Hum Mol Genet	Genetic determinants of heel bone properties: genome-wide association meta-analysis and replication in the GEFOS/GENOMOS consortium.	Bone properties (heel)	730 East Asian ancestry individuals, 2,380 European ancestry individuals, 11,150 individuals	11,058 European ancestry individuals, 2,870 European and other ancestry individuals, 21,439 individuals	6q22.33	RSPO3	rs7741021-C	0.47	9E-21	(BUA)	0.06	[0.05-0.07] unit increase	Affymetrix, Illumina [up to 2609590] (imputed)	N
1557	chr6	127468273	127468274	rs7741021	24430505	Moayyeri A	2014-01-14	Hum Mol Genet	Genetic determinants of heel bone properties: genome-wide association meta-analysis and replication in the GEFOS/GENOMOS consortium.	Bone properties (heel)	4,556 European ancestry individuals	2,236 European ancestry individuals	6q22.33	RSPO3	rs7741021-?		4E-8	(BMD-DXA)			Affymetrix, Illumina [up to 2399195] (imputed)	N
1557	chr6	127468273	127468274	rs7741021	24430505	Moayyeri A	2014-01-14	Hum Mol Genet	Genetic determinants of heel bone properties: genome-wide association meta-analysis and replication in the GEFOS/GENOMOS consortium.	Bone properties (heel)	2,483 East Asian ancestry individuals, 1,885 European ancestry individuals, 11,146 individuals	10,074 European ancestry individuals, 2,870 European and other ancestry individuals, 21,434 individuals	6q22.33	RSPO3	rs7741021-C	0.47	1E-19	(VOS)	0.06	[0.05-0.08] unit increase	Affymetrix, Illumina [up to 2609590] (imputed)	N
1557	chr6	127471330	127471331	rs9491698	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	6q22.33		rs9491698-C	NR	9E-22		0.0183	[0.015-0.022] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
1557	chr6	127471532	127471533	rs9491699	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	6q22.33	RSPO3	rs9491699-C	0.521839	2E-11		0.0139996	[0.0099-0.0181] unit decrease	Affymetrix [NR] (imputed)	N
1557	chr6	127471790	127471791	rs3734626	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6q22.33	RSPO3	rs3734626-C	0.438125	2E-45	(RSPO3, 8427_118_3)	0.32450747	[0.28-0.37] unit decrease	Illumina [> 1000000] (imputed)	N
1557	chr6	127472588	127472589	rs77097175	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6q22.33	NR	rs77097175-?	NR	1E-14				Affymetrix [~ 8270000] (imputed)	N
1557	chr6	127476515	127476516	rs1892172	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x long total sleep time interaction (2df test)	2,933 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, up to 7,870 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,975 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 32,171 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 616 East Asian ancestry long sleepers, up to 9,486 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 929 African American controls, 2,517 East Asian ancestry controls, up to 38,126 European ancestry controls, 10,063 Hispanic controls	6q22.33	RSPO3	rs1892172-?	NR	2E-11		0.00529	[0.0035-0.0071] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
1557	chr6	127476515	127476516	rs1892172	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 157,516 European ancestry women, up to 180,131 African American, South Asian, East Asian and Hispanic ancestry women	up to 62,368 European ancestry women	6q22.33	RSPO3	rs1892172-A	0.5446	3E-48		0.0423	[0.037-0.048] unit increase	Affymetrix, Illumina [at least 228985]	N
1557	chr6	127476515	127476516	rs1892172	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 157,516 European ancestry women	up to 62,368 European ancestry women	6q22.33	RSPO3	rs1892172-A	0.5422	7E-51		0.0446	[0.039-0.051] unit increase	Affymetrix, Illumina [at least 228985]	N
1557	chr6	127476515	127476516	rs1892172	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 130,976 European ancestry men, up to 164,238  African American, South Asian, East Asian and Hispanic ancestry men	up to 62,500 European ancestry men	6q22.33	RSPO3	rs1892172-A	0.5412	6E-10		0.0184	[0.013-0.024] unit increase	Affymetrix, Illumina [at least 228985]	N
1557	chr6	127476515	127476516	rs1892172	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 130,976 European ancestry men	up to 62,500 European ancestry men	6q22.33	RSPO3	rs1892172-A	0.5399	2E-10		0.0204	[0.014-0.027] unit increase	Affymetrix, Illumina [at least 228985]	N
1557	chr6	127476515	127476516	rs1892172	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	288,492 European ancestry individuals, up to 15,687 African American individuals, up to 29,315 South Asian ancestry individuals, up to 6,800 East Asian ancestry individuals, up to 4,075 Hispanic ancestry individuals	132,177 European ancestry individuals	6q22.33	RSPO3	rs1892172-A	0.5429	3E-47		0.0305	[0.026-0.035] unit increase	Affymetrix, Illumina [at least 228985]	N
1557	chr6	127476515	127476516	rs1892172	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	288,492 European ancestry individuals	132,177 European ancestry individuals	6q22.33	RSPO3	rs1892172-A	0.5409	1E-49		0.033	[0.029-0.037] unit increase	Affymetrix, Illumina [at least 228985]	N
1557	chr6	127476716	127476717	rs2489629	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	6q22.33	RSPO3	rs2489629-T	0.5744	6E-11		0.0175	[0.012-0.023] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1557	chr6	127489564	127489564	rs140888844	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6q22.33	RSPO3	rs140888844-T	NR	4E-13		0.0229357	[0.017-0.029] unit decrease	Affymetrix [323858] (imputed)	N
1557	chr6	127489564	127489564	rs140888844	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6q22.33	RSPO3	rs140888844-T	NR	9E-14		0.0235277	[0.017-0.03] unit decrease	Affymetrix [127266] (imputed)	N
1557	chr6	127489564	127489564	rs140888844	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6q22.33	RSPO3	rs140888844-T	NR	4E-51		0.0431705	[0.038-0.049] unit decrease	Affymetrix [321114] (imputed)	N
1557	chr6	127489564	127489564	rs140888844	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6q22.33	RSPO3	rs140888844-T	NR	7E-51		0.0431558	[0.038-0.049] unit decrease	Affymetrix [321169] (imputed)	N
1557	chr6	127493140	127493141	rs7742668	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x short total sleep time interaction (2df test)	3,007 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,474 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, up to 11,901 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,567 European ancestry controls, 4,047 Hispanic/Latino controls	up to 221 African American short sleepers, 629 East Asian ancestry short sleepers, up to 9,585 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 2,504 East Asian ancestry controls, up to 38,027 European ancestry controls, 10,061 Hispanic controls	6q22.33	RSPO3	rs7742668-?	NR	1E-10		0.004777	[0.003-0.0066] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
1557	chr6	127493610	127493611	rs6569474	21909109	Kim YJ	2011-09-11	Nat Genet	Large-scale genome-wide association studies in East Asians identify new genetic loci influencing metabolic traits.	Metabolite levels	12,545 Korean ancestry individuals	Up to 30,395 East Asian ancestry individuals	6q22.33	RSPO3	rs6569474-A	0.47	1E-8	(BUN)	0.009	[0.0059-0.0121] mg/dL decrease	Affymetrix [~ 2200000] (imputed)	N
1557	chr6	127499083	127499084	rs75699605	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	6q22.33		rs75699605-?	NR	8E-14				NR [~ 8900000] (imputed)	N
1557	chr6	127509156	127509157	rs7745274	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Waist-hip ratio	4,774 European ancestry high waist-to-hip ratio individuals, 5,481 European ancestry low waist-to-hip ratio individuals	3,351 European ancestry high waist-to-hip ratio individuals, 3,352 European ancestry low waist-to-hip ratio individuals	6q22.33	RSPO3	rs7745274-A	0.55	9E-10		1.15	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
1557	chr6	127511522	127511523	rs6569475	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	6q22.33		rs6569475-G	0.45396	2E-11		0.0248125	[0.018-0.032] unit decrease	NR [11722792] (imputed)	N
1557	chr6	127511522	127511523	rs6569475	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6q22.33	NR	rs6569475-?	NR	5E-37				Affymetrix [~ 8270000] (imputed)	N
1557	chr6	127519233	127519234	rs10457487	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	6q22.33		rs10457487-C	0.515679	2E-15		0.0288313	[0.022-0.036] unit increase	NR [11722792] (imputed)	N
1557	chr6	127519233	127519234	rs10457487	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	6q22.33		rs10457487-C	0.515682	3E-10		0.0239937	[0.017-0.031] unit increase	NR [11722792] (imputed)	N
1557	chr6	127519233	127519234	rs10457487	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large HDL	115,082 European ancestry individuals	NA	6q22.33		rs10457487-C	0.515679	2E-15		0.0289085	[0.022-0.036] unit increase	NR [11722792] (imputed)	N
1557	chr6	127519233	127519234	rs10457487	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	6q22.33		rs10457487-C	0.515679	3E-14		0.0276723	[0.021-0.035] unit increase	NR [11722792] (imputed)	N
1557	chr6	127519233	127519234	rs10457487	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in HDL	115,082 European ancestry individuals	NA	6q22.33		rs10457487-C	0.515679	1E-10		0.0235871	[0.016-0.031] unit increase	NR [11722792] (imputed)	N
1557	chr6	127519233	127519234	rs10457487	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	6q22.33		rs10457487-C	0.515679	1E-14		0.0281667	[0.021-0.035] unit increase	NR [11722792] (imputed)	N
1557	chr6	127519233	127519234	rs10457487	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	6q22.33		rs10457487-C	0.515679	2E-14		0.0281598	[0.021-0.035] unit increase	NR [11722792] (imputed)	N
1557	chr6	127519233	127519234	rs10457487	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	6q22.33	RSPO3	rs10457487-A	NR	6E-9		0.0186466	[0.012-0.025] unit decrease	Affymetrix [323858] (imputed)	N
1557	chr6	127519233	127519234	rs10457487	30158200	Trajanoska K	2018-08-29	BMJ	Assessment of the genetic and clinical determinants of fracture risk: genome wide association and mendelian randomisation study.	Fractures	37,857 European or East Asian cases, 227,116 European or East Asian controls	147,200 European ancestry cases, 150,085 European ancestry controls	6q22.33	RSPO3	rs10457487-C	0.51	5E-28		1.05	[1.04-1.06]	Affymetrix, Illumina [2539801] (imputed)	N
1557	chr6	127519233	127519234	rs10457487	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	6q22.33	NR	rs10457487-A	0.4867	3E-9	(European)	0.0371	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
1557	chr6	127519233	127519234	rs10457487	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	6q22.33	NR	rs10457487-A	0.4763	6E-10		0.0352	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
1557	chr6	127521126	127521127	rs4318902	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large HDL	115,082 European ancestry individuals	NA	6q22.33		rs4318902-A	0.443262	9E-11		0.0243786	[0.017-0.032] unit increase	NR [11722792] (imputed)	N
1557	chr6	127521126	127521127	rs4318902	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large HDL	115,082 European ancestry individuals	NA	6q22.33		rs4318902-A	0.443262	3E-11		0.0250692	[0.018-0.032] unit increase	NR [11722792] (imputed)	N
1557	chr6	127521126	127521127	rs4318902	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	6q22.33		rs4318902-A	0.443262	1E-9		0.0225301	[0.015-0.03] unit increase	NR [11722792] (imputed)	N
1557	chr6	127524397	127524398	rs72961007	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6q22.33	RSPO3	rs72961007-A	NR	1E-17		0.0523627	[0.04-0.064] unit decrease	Affymetrix [323123] (imputed)	N
1557	chr6	127524397	127524398	rs72961007	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	6q22.33	NR	rs72961007-C	0.934341	3E-11		0.025359	[0.018-0.033] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
1557	chr6	127524397	127524398	rs72961007	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6q22.33	NR	rs72961007-C	NR	1E-9		0.051	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1557	chr6	127524397	127524398	rs72961007	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6q22.33	NR	rs72961007-C	0.939	2E-9	(EA)	0.052	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1557	chr6	127524397	127524398	rs72961007	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6q22.33	NR	rs72961007-C	NR	8E-12		0.053	unit increase	Affymetrix [at least 7091467] (imputed)	N
1557	chr6	127524397	127524398	rs72961007	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6q22.33	NR	rs72961007-C	0.939	7E-11	(EA)	0.051	unit increase	Affymetrix [at least 7091467] (imputed)	N
1557	chr6	127529208	127529209	rs9968920	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	6q22.33	RSPO3	rs9968920-C	NR	1E-34		0.0363793	[0.031-0.042] unit increase	Affymetrix [321788] (imputed)	N
1557	chr6	127529208	127529209	rs9968920	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6q22.33	RSPO3	rs9968920-C	NR	1E-24		0.0291347	[0.024-0.035] unit increase	Affymetrix [321016] (imputed)	N
1557	chr6	127529779	127529780	rs72961013	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	6q22.33	NR	rs72961013-A	NR	2E-18		0.0427	[0.033-0.052] unit increase	Affymetrix [9000000] (imputed)	N
1557	chr6	127529779	127529780	rs72961013	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	6q22.33	NR	rs72961013-A	NR	3E-9		0.0289	[0.019-0.039] unit decrease	Affymetrix [9000000] (imputed)	N
1557	chr6	127529779	127529780	rs72961013	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	6q22.33	NR	rs72961013-A	NR	5E-17		0.0426	[0.033-0.053] unit increase	Affymetrix [9000000] (imputed)	N
1557	chr6	127529779	127529780	rs72961013	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	6q22.33	NR	rs72961013-A	NR	7E-10		0.0314	[0.021-0.041] unit decrease	Affymetrix [9000000] (imputed)	N
1557	chr6	127529779	127529780	rs72961013	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	6q22.33	NR	rs72961013-A	NR	2E-9		0.0291	[0.019-0.039] unit increase	Affymetrix [9000000] (imputed)	N
1557	chr6	127529779	127529780	rs72961013	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	6q22.33	NR	rs72961013-A	NR	3E-10		0.0307	[0.021-0.04] unit increase	Affymetrix [9000000] (imputed)	N
1557	chr6	127529779	127529780	rs72961013	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	6q22.33	NR	rs72961013-A	NR	2E-13		0.0372	[0.027-0.047] unit decrease	Affymetrix [9000000] (imputed)	N
1557	chr6	127529779	127529780	rs72961013	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	6q22.33	NR	rs72961013-A	NR	2E-24		0.0495	[0.04-0.059] unit decrease	Affymetrix [9000000] (imputed)	N
1557	chr6	127529779	127529780	rs72961013	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	6q22.33	NR	rs72961013-A	NR	1E-10		0.0315	[0.022-0.041] unit increase	Affymetrix [9000000] (imputed)	N
1557	chr6	127530202	127530203	rs78863192	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6q22.33	NR	rs78863192-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
1558	chr6	127542952	127542953	rs9791192	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	6q22.33		rs9791192-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1558	chr6	127547026	127547027	rs7759507	33109212	Chang H	2020-10-28	BMC Med	Genetic architecture of cardiometabolic risks in people living with HIV.	LDL cholesterol levels in HIV infection	3,095 European ancestry individuals, 3,189 African American individuals	NA	6q22.33	RSPO3, RNF146	rs7759507-?		6E-6	(EA)	0.16121642	[0.091-0.231] unit increase	Illumina [13620258] (imputed)	N
1558	chr6	127547026	127547027	rs7759507	33109212	Chang H	2020-10-28	BMC Med	Genetic architecture of cardiometabolic risks in people living with HIV.	LDL cholesterol levels in HIV infection	3,095 European ancestry individuals, 3,189 African American individuals	NA	6q22.33	RSPO3, RNF146	rs7759507-?		6E-6	(African American)	0.16121642	[0.091-0.231] unit increase	Illumina [13620258] (imputed)	N
1558	chr6	127550317	127550318	rs148084229	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6q22.33	RSPO3	rs148084229-G	NR	7E-23		0.0677438	[0.054-0.081] unit increase	Affymetrix [319769] (imputed)	N
1558	chr6	127550317	127550318	rs148084229	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6q22.33	RSPO3	rs148084229-G	NR	4E-24		0.0697068	[0.056-0.083] unit increase	Affymetrix [319769] (imputed)	N
1558	chr6	127550317	127550318	rs148084229	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6q22.33	RSPO3	rs148084229-G	NR	4E-12		0.0481969	[0.035-0.062] unit increase	Affymetrix [321114] (imputed)	N
1558	chr6	127550317	127550318	rs148084229	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	6q22.33	RSPO3	rs148084229-G	NR	1E-12		0.0507305	[0.037-0.065] unit decrease	Affymetrix [321788] (imputed)	N
1558	chr6	127550317	127550318	rs148084229	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	6q22.33	RSPO3	rs148084229-G	NR	2E-8		0.0446654	[0.029-0.06] unit decrease	Affymetrix [323858] (imputed)	N
1558	chr6	127550317	127550318	rs148084229	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6q22.33	RSPO3	rs148084229-G	NR	2E-8		0.0388287	[0.025-0.052] unit decrease	Affymetrix [321016] (imputed)	N
1558	chr6	127550317	127550318	rs148084229	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6q22.33	RSPO3	rs148084229-G	NR	2E-12		0.0490457	[0.035-0.063] unit increase	Affymetrix [321169] (imputed)	N
1558	chr6	127550317	127550318	rs148084229	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6q22.33	NR	rs148084229-?	NR	9E-27				Affymetrix [~ 8270000] (imputed)	N
1558	chr6	127550317	127550318	rs148084229	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6q22.33	NR	rs148084229-?	NR	3E-11				Affymetrix [~ 8270000] (imputed)	N
1558	chr6	127559366	127559367	rs9401944	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	6q22.33		rs9401944-A	0.572549	2E-11		0.0141258	[0.01-0.018] unit decrease	Affymetrix [93095623] (imputed)	N
1558	chr6	127600629	127600630	rs2180341	18326623	Gold B	2008-03-11	Proc Natl Acad Sci U S A	Genome-wide association study provides evidence for a breast cancer risk locus at 6q22.33.	Breast cancer	249 Ashkenazi Jewish non-BRCA1/2 carriers cases, 299 Ashkenazi Jewish non-BRCA1/2 carriers controls	1,193 Ashkenazi Jewish non-BRCA1/2 carriers  cases,1,166 Ashkenazi Jewish non-BRCA1/2 carriers controls	6q22.33	ECHDC1, RNF146	rs2180341-G	0.21	3E-8		1.41	[1.25-1.59]	Affymetrix [150080]	N
1558	chr6	127627411	127627412	rs76618670	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6q22.33	ECHDC1	rs76618670-A	NR	2E-8		0.0527763	[0.034-0.071] unit increase	Affymetrix [321114] (imputed)	N
1558	chr6	127633203	127633204	rs35311556	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6q22.33	ECHDC1	rs35311556-T	0.755851	8E-12		0.017335823	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1558	chr6	127641959	127641960	rs3823042	30694715	Sakornsakolpat P	2019-01-29	Am J Respir Cell Mol Biol	Genome-Wide Association Analysis of Single Breath Diffusing Capacity of Carbon Monoxide (DLCO).	Diffusing capacity of carbon monoxide	2,584 European ancestry individuals with chronic obstructive pulmonary disease, 3,002 European ancestry healthy individuals, 343 African American individuals with chronic obstructive pulmonary disease, 1,006 African American healthy individuals	NA	6q22.33	ECHDC1	rs3823042-A	0.05	9E-6	(African American)	0.41	0.23-0.59 unit increase	Illumina [NR] (imputed)	N
1558	chr6	127642574	127642575	rs141219813	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6q22.33	ECHDC1	rs141219813-A	NR	7E-13		0.0664841	[0.048-0.085] unit increase	Affymetrix [319769] (imputed)	N
1558	chr6	127642574	127642575	rs141219813	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6q22.33	ECHDC1	rs141219813-A	NR	3E-13		0.0674982	[0.049-0.086] unit increase	Affymetrix [319769] (imputed)	N
1558	chr6	127642574	127642575	rs141219813	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	6q22.33	ECHDC1	rs141219813-A	NR	4E-8		0.0531156	[0.034-0.072] unit decrease	Affymetrix [321788] (imputed)	N
1558	chr6	127643791	127643791	rs148342778	32989287	Cuellar-Partida G	2020-09-28	Nat Hum Behav	Genome-wide association study identifies 48 common genetic variants associated with handedness.	Left-handedness	1,766,671 European ancestry individuals	NA	6q22.33	ECHDC1	rs148342778-D	0.6482	1E-8		0.974404	[NR]	Illumina [12493444] (imputed)	N
1558	chr6	127661791	127661791	rs139944328	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6q22.33	ECHDC1	rs139944328-GATAC	NR	2E-8		0.0295611	[0.019-0.04] unit decrease	Affymetrix [319769] (imputed)	N
1558	chr6	127661791	127661791	rs139944328	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6q22.33	ECHDC1	rs139944328-GATAC	NR	8E-9		0.0304256	[0.02-0.041] unit decrease	Affymetrix [319769] (imputed)	N
1559	chr6	127666769	127666770	rs11331612	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	6q22.33		rs11331612-C	NR	7E-11		0.0173	[0.012-0.022] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
1559	chr6	127671631	127671632	rs9401951	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q22.33	NR	rs9401951-C	0.754798	4E-13				Affymetrix, Illumina [24246363] (imputed)	N
1559	chr6	127674661	127674662	rs9398842	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	6q22.33	NR	rs9398842-C	0.753855	5E-14		0.015682	[0.012-0.02] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1559	chr6	127675609	127675610	rs149717948	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6q22.33	NR	rs149717948-?	NR	3E-25				Affymetrix [~ 8270000] (imputed)	N
1559	chr6	127675609	127675610	rs149717948	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6q22.33	NR	rs149717948-?	NR	4E-11				Affymetrix [~ 8270000] (imputed)	N
1559	chr6	127683039	127683040	rs7751865	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	6q22.33	RPL5P18	rs7751865-A	0.755296	2E-11		0.017128287	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1559	chr6	127719061	127719062	rs9401955	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6q22.33	RP1-177A13.1	rs9401955-C	NR	2E-8		0.0250902	[0.016-0.034] unit increase	Affymetrix [319769] (imputed)	N
1559	chr6	127719061	127719062	rs9401955	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6q22.33	RP1-177A13.1	rs9401955-C	NR	5E-9		0.0260084	[0.017-0.035] unit increase	Affymetrix [319769] (imputed)	N
1559	chr6	127760494	127760495	rs3938	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	6q22.33	RNF146	rs3938-G	0.603948229687525	4E-6		0.0025268	[NR] unit increase	Affymetrix [> 30000000] (imputed)	N
1559	chr6	127762587	127762588	rs141281941	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6q22.33	SOGA3, KIAA0408	rs141281941-A	NR	6E-16		0.0853884	[0.065-0.106] unit increase	Affymetrix [319769] (imputed)	N
1559	chr6	127762587	127762588	rs141281941	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6q22.33	SOGA3, KIAA0408	rs141281941-A	NR	2E-16		0.0868973	[0.066-0.108] unit increase	Affymetrix [319769] (imputed)	N
1559	chr6	127762587	127762588	rs141281941	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6q22.33	SOGA3, KIAA0408	rs141281941-A	NR	2E-8		0.0596892	[0.039-0.081] unit increase	Affymetrix [321114] (imputed)	N
1559	chr6	127762587	127762588	rs141281941	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	6q22.33	SOGA3, KIAA0408	rs141281941-A	NR	1E-9		0.0672644	[0.046-0.089] unit decrease	Affymetrix [321788] (imputed)	N
1559	chr6	127764304	127764305	rs17205908	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	6q22.33	Intergenic	rs17205908-T	0.3254	2E-8	(MTAG)	0.0099	[0.0064-0.0134] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1559	chr6	127764304	127764305	rs17205908	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6q22.33		rs17205908-T	0.3311	8E-10		0.0092	[0.0063-0.0121] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1559	chr6	127764304	127764305	rs17205908	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6q22.33	Intergenic	rs17205908-T	0.3311	9E-12	(MTAG)	0.0095	[0.0068-0.0122] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1559	chr6	127767953	127767954	rs139745911	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 157,516 European ancestry women, up to 180,131 African American, South Asian, East Asian and Hispanic ancestry women	up to 62,368 European ancestry women	6q22.33	KIAA0408	rs139745911-A	0.0099	6E-19		0.1429	[0.11-0.17] unit increase	Affymetrix, Illumina [at least 228985]	N
1559	chr6	127767953	127767954	rs139745911	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 157,516 European ancestry women	up to 62,368 European ancestry women	6q22.33	KIAA0408	rs139745911-A	0.0105	5E-19		0.1443	[0.11-0.18] unit increase	Affymetrix, Illumina [at least 228985]	N
1559	chr6	127767953	127767954	rs139745911	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	288,492 European ancestry individuals, up to 15,687 African American individuals, up to 29,315 South Asian ancestry individuals, up to 6,800 East Asian ancestry individuals, up to 4,075 Hispanic ancestry individuals	132,177 European ancestry individuals	6q22.33	KIAA0408	rs139745911-A	0.0097	7E-19		0.1033	[0.081-0.126] unit increase	Affymetrix, Illumina [at least 228985]	N
1559	chr6	127767953	127767954	rs139745911	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	288,492 European ancestry individuals	132,177 European ancestry individuals	6q22.33	KIAA0408	rs139745911-A	0.0103	1E-18		0.1034	[0.08-0.126] unit increase	Affymetrix, Illumina [at least 228985]	N
1559	chr6	127781808	127781809	rs185570139	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6q22.33	NR	rs185570139-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
1559	chr6	127785690	127785691	rs7775090	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	6q22.33		rs7775090-?	NR	3E-15				NR [~ 8900000] (imputed)	N
1560	chr6	127804984	127804985	rs1512450	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	6q22.33	SOGA3	rs1512450-C	0.367061	2E-11		0.0129366	[0.0092-0.0167] unit decrease	NR [13737936] (imputed)	N
1560	chr6	127808154	127808155	rs9372872	26631737	Teumer A	2015-12-02	Diabetes	Genome-wide Association Studies Identify Genetic Loci Associated With Albuminuria in Diabetes.	Urinary albumin-to-creatinine ratio in non-diabetics	up to 46,051 European ancestry individuals	NA	6q22.33	SOGA3, KIAA0408, C6orf58	rs9372872-C	0.11	3E-6		0.046	[0.026-0.066] unit increase	Affymetrix, Illumina [2191945] (imputed)	N
1560	chr6	127843872	127843873	rs7766541	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	6q22.33	NR	rs7766541-?	NR	6E-6				Affymetrix [NR]	N
1560	chr6	127865170	127865171	rs560785633	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6q22.33	NR	rs560785633-?	NR	8E-27				Affymetrix [~ 8270000] (imputed)	N
1560	chr6	127865170	127865171	rs560785633	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6q22.33	NR	rs560785633-?	NR	8E-11				Affymetrix [~ 8270000] (imputed)	N
1560	chr6	127869046	127869047	rs79618076	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6q22.33	C6orf58	rs79618076-G	NR	5E-10		0.0345873	[0.024-0.045] unit increase	Affymetrix [319769] (imputed)	N
1560	chr6	127869046	127869047	rs79618076	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6q22.33	C6orf58	rs79618076-G	NR	2E-10		0.0354495	[0.025-0.046] unit increase	Affymetrix [319769] (imputed)	N
1560	chr6	127869046	127869047	rs79618076	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6q22.33	NR	rs79618076-?	NR	3E-15				Affymetrix [~ 8270000] (imputed)	N
1560	chr6	127883132	127883133	rs9388588	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6q22.33		rs9388588-?	NR	1E-11				NR [~ 8900000] (imputed)	N
1560	chr6	127884123	127884124	rs9401974	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	6q22.33		rs9401974-?	NR	9E-8				NR [~ 8900000] (imputed)	N
1560	chr6	127884123	127884124	rs9401974	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6q22.33		rs9401974-?	NR	2E-11		0.0128816	[0.0088-0.0169] unit increase	Affymetrix [20259828] (imputed)	N
1560	chr6	127889086	127889087	rs143307126	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-to-hip ratio adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,049 whole genome sequenced individuals, 29,518 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,001 Mylopotamos (founder/genetic isolate) individuals, 867 Pomak (founder/genetic isolate) individuals	206,045 European ancestry individuals	6q22.33	C6orf58	rs143307126-T	0.9935	8E-6		0.2504	[0.14-0.36] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1560	chr6	127889329	127889330	rs4897220	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	6q22.33	NR	rs4897220-?	NR	2E-6	(EA)	0.1952	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1560	chr6	127915331	127915332	rs184937291	30287806	Zhou H	2018-10-04	Transl Psychiatry	Genome-wide association study identifies glutamate ionotropic receptor GRIA4 as a risk gene for comorbid nicotine dependence and major depression.	Nicotine dependence and major depression (severity of comorbidity)	3,724 African American individuals	NA	6q22.33	Intergenic	rs184937291-G	0.019	6E-6		2.0748	[1.18-2.97] unit decrease	Illumina [9520174] (imputed)	N
1560	chr6	127922535	127922536	rs75123935	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6q22.33	C6orf58	rs75123935-G	NR	6E-9		0.0412673	[0.027-0.055] unit increase	Affymetrix [319769] (imputed)	N
1560	chr6	127922535	127922536	rs75123935	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6q22.33	C6orf58	rs75123935-G	NR	1E-9		0.0432204	[0.029-0.057] unit increase	Affymetrix [319769] (imputed)	N
1561	chr6	127963947	127963947	rs138018455	27846281	Galesloot TE	2016-11-15	PLoS One	Meta-GWAS and Meta-Analysis of Exome Array Studies Do Not Reveal Genetic Determinants of Serum Hepcidin.	Hepcidin/ferritin ratio	1495 European ancestry individuals without iron deficiency or clinical inflammation, 324 European ancestry individuals, 1206 Val Borbera (founder/genetic isolated) individuals without iron deficiency or clinical inflammation, 274 Val Borbera (founder/genetic isolated) individuals, 2,695 European ancestry individuals without iron deficiency or clinical inflammation, 207 individuals	NA	6q22.33	C6orf58	rs138018455-A	0.8042	5E-8		0.1896	[0.12-0.26] unit increase	Illumina [up to 38043574] (imputed)	N
1561	chr6	128021802	128021803	rs17299841	22610502	Kennedy RB	2012-05-19	Hum Genet	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune response to smallpox vaccine (IL-6)	Up to 512 European ancestry individuals, 199 African American individuals	NA	6q22.33	C6orf190	rs17299841-C		2E-7	(AA)			Illumina [NR]	N
1561	chr6	128023380	128023381	rs72965720	28701861	Randall CL	2017-06-15	Pain Res Manag	A Preliminary Genome-Wide Association Study of Pain-Related Fear: Implications for Orofacial Pain.	Fear of medical pain (dental)	Up to 1,367 European ancestry individuals, up to 159 African American individuals, up to 13 Hispanic individuals, up to 23 Asian, Native American and other ancestry individuals, up to 21 individuals	NA	6q22.33	NR	rs72965720-C	0.08	2E-7		1.43	unit increase	Illumina [8591557] (imputed)	N
1561	chr6	128040838	128040839	rs675531	25935106	Kim KW	2015-04-30	J Allergy Clin Immunol	Genome-wide association study of recalcitrant atopic dermatitis in Korean children.	Recalcitrant atopic dermatitis	246 Korean ancestry child cases, 551 Korean ancestry adult controls	NA	6q22.33	THEMIS	rs675531-C	0.113	7E-7		2.193	[1.610-2.994]	Affymetrix [2501352] (imputed)	N
1562	chr6	128077171	128077171	rs57815653	27846281	Galesloot TE	2016-11-15	PLoS One	Meta-GWAS and Meta-Analysis of Exome Array Studies Do Not Reveal Genetic Determinants of Serum Hepcidin.	Hepcidin/ferritin ratio	1495 European ancestry individuals without iron deficiency or clinical inflammation, 324 European ancestry individuals, 1206 Val Borbera (founder/genetic isolated) individuals without iron deficiency or clinical inflammation, 274 Val Borbera (founder/genetic isolated) individuals, 2,695 European ancestry individuals without iron deficiency or clinical inflammation, 207 individuals	NA	6q22.33	THEMIS	rs57815653-CA	0.1207	4E-6	(Subset)	0.2076	[0.12-0.3] unit decrease	Illumina [up to 38043574] (imputed)	N
1562	chr6	128077171	128077171	rs57815653	27846281	Galesloot TE	2016-11-15	PLoS One	Meta-GWAS and Meta-Analysis of Exome Array Studies Do Not Reveal Genetic Determinants of Serum Hepcidin.	Hepcidin/ferritin ratio	1495 European ancestry individuals without iron deficiency or clinical inflammation, 324 European ancestry individuals, 1206 Val Borbera (founder/genetic isolated) individuals without iron deficiency or clinical inflammation, 274 Val Borbera (founder/genetic isolated) individuals, 2,695 European ancestry individuals without iron deficiency or clinical inflammation, 207 individuals	NA	6q22.33	THEMIS	rs57815653-CA	0.118	1E-6		0.2007	[0.12-0.28] unit decrease	Illumina [up to 38043574] (imputed)	N
1562	chr6	128077737	128077738	rs62425513	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Uterine fibroids	5,236 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6q22.33	Intergenic	rs62425513-?		9E-6		1.1764705	[1.09-1.25]	Illumina [7645193] (imputed)	N
1562	chr6	128087231	128087232	rs78595707	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6q22.33	NR	rs78595707-?	NR	3E-10				Affymetrix [~ 8270000] (imputed)	N
1562	chr6	128124122	128124123	rs145316713	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		THEMIS	rs145316713-?	NR	6E-9	(female)	0.553249	[NR] unit increase	Affymetrix [NR] (imputed)	N
1562	chr6	128132851	128132856	rs368009660	30287806	Zhou H	2018-10-04	Transl Psychiatry	Genome-wide association study identifies glutamate ionotropic receptor GRIA4 as a risk gene for comorbid nicotine dependence and major depression.	Nicotine dependence and major depression (severity of comorbidity)	3,724 African American individuals	NA	6q22.33	THEMIS	rs368009660-CTCATT	0.0323	4E-6		1.3977	[0.8-1.99] unit decrease	Illumina [9520174] (imputed)	N
1562	chr6	128143523	128143524	rs6918558	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6q22.33	NR	rs6918558-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
1562	chr6	128156614	128156615	rs75046825	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6q22.33	NR	rs75046825-?	NR	2E-19				Affymetrix [~ 8270000] (imputed)	N
1562	chr6	128156614	128156615	rs75046825	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6q22.33	NR	rs75046825-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
1562	chr6	128156887	128156888	rs4897233	25920553	Coleman C	2015-04-29	Eur J Hum Genet	Common polygenic variation in coeliac disease and confirmation of ZNF335 and NIFA as disease susceptibility loci.	Celiac disease	425 Irish ancestry cases, 453 Irish ancestry controls	11,812 European ancestry cases, 229 Indian ancestry cases, 11,837 European ancestry controls, 391 Indian ancestry controls	6q22.33	THEMIS	rs4897233-?	NR	2E-8		0.1047	unit decrease	Illumina [up to 143074]	N
1562	chr6	128181419	128181420	rs1333765	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Uterine fibroids	5,236 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6q22.33	Intergenic	rs1333765-?		6E-6		1.1764705	[1.1-1.27]	Illumina [7645193] (imputed)	N
1563	chr6	128194472	128194473	rs12194062	23534349	Jeff JM	2013-03-28	Ann Hum Genet	Generalization of variants identified by genome-wide association studies for electrocardiographic traits in African Americans.	QRS duration	455 African American individuals	NA	6q22.33	C6orf190	rs12194062-T		5E-6		5.16	[NR] ms increase	Illumina [> 930000]	N
1563	chr6	128198742	128198743	rs9372883	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	6q22.33		rs9372883-?	NR	7E-10				NR [~ 8900000] (imputed)	N
1563	chr6	128202138	128202139	rs9321099	26632684	Dong J	2015-11-01	Medicine (Baltimore)	Genome-wide Meta-analysis on the Sense of Smell Among US Older Adults.	Sense of smell	6,252 European ancestry individuals	NA	6q22.33	C6orf1	rs9321099-A	0.09	7E-6	(Ajusted for ApoE)	0.04	[0.02-0.06] ln(smell score+1) decrease	Affymetrix, Illumina [2543887] (imputed)	N
1563	chr6	128202138	128202139	rs9321099	26632684	Dong J	2015-11-01	Medicine (Baltimore)	Genome-wide Meta-analysis on the Sense of Smell Among US Older Adults.	Sense of smell	6,252 European ancestry individuals	NA	6q22.33	C6orf1	rs9321099-A	0.09	6E-6		0.04	[0.020-0.060] ln(smell score+1) decrease	Affymetrix, Illumina [2543887] (imputed)	N
1563	chr6	128211805	128211806	rs192087058	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	6q22.33	THEMIS	rs192087058-A	0.998	2E-6	(AA)	0.211	unit increase	Illumina [NR] (imputed)	N
1563	chr6	128224166	128224167	rs151181520	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	6q22.33	THEMIS	rs151181520-T	0.998	5E-6	(AA)	0.199	unit increase	Illumina [NR] (imputed)	N
1563	chr6	128245764	128245765	rs13204742	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	6q22.33	NR	rs13204742-A	0.1267	5E-10	(EA)	1.0959492	[1.07-1.12]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1563	chr6	128245764	128245765	rs13204742	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Crohn's disease	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls	6q22.33	intergenic	rs13204742-T	0.124	8E-15		1.173	[1.118-1.23]	Affymetrix, Illumina [1230000] (imputed)	N
1563	chr6	128277150	128277151	rs9491891	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	6q22.33	THEMIS, PTPRK	rs9491891-?		7E-6				Illumina [9560910] (imputed)	N
1563	chr6	128277150	128277151	rs9491891	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	6q22.33	intergenic	rs9491891-?	NR	5E-15	(subset analysis)			Illumina [130052]	N
1563	chr6	128277150	128277151	rs9491891	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	6q22.33	NR	rs9491891-?	NR	3E-16	(EA)			Affymetrix, Illumina [~ 9000000] (imputed)	N
1563	chr6	128278797	128278798	rs802734	31407831	Din L	2019-08-13	Genet Epidemiol	Genetic overlap between autoimmune diseases and non-Hodgkin lymphoma subtypes.	Chronic lymphocytic leukemia or multiple sclerosis	2,492 European ancestry chronic lymphocytic leukemia cases, 9,772 European ancestry multiple sclerosis cases, 24,529 European ancestry controls	NA	6q22.33	Intergenic	rs802734-?	NR	9E-9		1.0934937		Illumina [~ 460000] (imputed)	N
1563	chr6	128278797	128278798	rs802734	21833088	Sawcer S	2011-08-11	Nature	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	6q22.33	THEMIS, PTPRK	rs802734-A	NR	6E-9		1.1	[1.09-1.12]	Illumina [465434]	N
1563	chr6	128278797	128278798	rs802734	20190752	Dubois PC	2010-02-28	Nat Genet	Multiple common variants for celiac disease influencing immune gene expression.	Celiac disease	4,533 European ancestry cases, 10,750 European ancestry controls	4,918 European ancestry cases, 5,684 European ancestry controls	6q22.33	THEMIS, PTPRK	rs802734-G	0.31	3E-14		1.17	[1.12-1.22]	Illumina [292387]	N
1563	chr6	128279428	128279429	rs802731	34103634	Valette K	2021-06-08	Commun Biol	Prioritization of candidate causal genes for asthma in susceptibility loci derived from UK Biobank.	Asthma	56,167 White-British ancestry cases, 352,255 White-British ancestry controls	NA	6q22.33	THEMIS, PTPRK	rs802731-G	0.270853973509331	7E-11		0.047918152	[0.034-0.062] unit increase	Affymetrix [35186738] (imputed)	N
1563	chr6	128279428	128279429	rs802731	31959851	Olafsdottir TA	2020-01-20	Nat Commun	Eighty-eight variants highlight the role of T cell regulation and airway remodeling in asthma pathogenesis.	Asthma	16,247 European ancestry cases, 346,486 European ancestry controls, 52,942 cases, 355,713 controls	NA	6q22.33	PTPRK, THEMIS, LOC101928140, C6orf58, SOGA3, KIAA0408	rs802731-G	0.27087	3E-10		1.04538	[1.03-1.06]	Affymetrix [32463443] (imputed)	N
1563	chr6	128279428	128279429	rs802731	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Respiratory diseases	approximately 459,000 European ancestry individuals	NA	6q22.33		rs802731-?	NR	6E-9				NR [~ 8900000] (imputed)	N
1563	chr6	128280103	128280104	rs802730	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	6q22.33	THEMIS	rs802730-T	NR	1E-9		1.0653	NR	Affymetrix, Illumina [8278136] (imputed)	N
1563	chr6	128287312	128287313	rs813915	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	6q22.33	PTPRK	rs813915-T	0.25	9E-19				NR [> 9500000] (imputed)	N
1563	chr6	128288535	128288536	rs9482849	29196614	Sud A	2017-12-01	Nat Commun	Genome-wide association study of classical Hodgkin lymphoma identifies key regulators of disease susceptibility.	Nodular sclerosis Hodgkin lymphoma	1,278 European ancestry cases, 14,325 European ancestry controls	1,586 cases, 3,069 controls	6q22.33	PTPRK	rs9482849-C	0.15	4E-6		1.21	[1.12-1.33]	Illumina [> 10000000] (imputed)	N
1563	chr6	128288535	128288536	rs9482849	29196614	Sud A	2017-12-01	Nat Commun	Genome-wide association study of classical Hodgkin lymphoma identifies key regulators of disease susceptibility.	Hodgkin's lymphoma	3,077 European ancestry cases, 13,680 European ancestry controls	2,237 cases, 3,069 controls	6q22.33	PTPRK	rs9482849-C	0.15	2E-8		1.2	[1.13-1.28]	Illumina [> 10000000] (imputed)	N
1563	chr6	128291198	128291199	rs3190930	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	6q22.33	PTPRK, THEMIS	rs3190930-T	0.244903	1E-11		1.0502295	[1.04-1.06]	Affymetrix [8274727] (imputed)	N
1563	chr6	128291198	128291199	rs3190930	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	6q22.33	PTPRK	rs3190930-T	0.2424	3E-11				Affymetrix [15688218] (imputed)	N
1563	chr6	128291198	128291199	rs3190930	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Celiac disease	11,489 European ancestry cases, 22,308 European ancestry controls	NA	6q22.33	PTPRK	rs3190930-T		2E-20		1.2111726		Illumina [252970]	N
1563	chr6	128291648	128291649	rs41285280	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	6q22.33	PTPRK	rs41285280-T	0.23764200000000002	2E-17		1.0621314	[1.0474825755761-1.07698506650107]	NR [9572556] (imputed)	N
1563	chr6	128291648	128291649	rs41285280	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6q22.33	NR	rs41285280-?	NR	6E-15				Affymetrix [~ 8270000] (imputed)	N
1563	chr6	128292070	128292071	rs3933376	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6q22.33	NR	rs3933376-A	0.1868	4E-10		1.049	[1.034-1.064]	Affymetrix [15688218] (imputed)	N
1563	chr6	128292070	128292071	rs3933376	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic disease (asthma, hay fever or eczema)	106,772 European ancestry cases, 239,773 European ancestry controls	83,335 cases, 34,934 controls	6q22.33	NR	rs3933376-A	0.1868	9E-10		1.044	[1.031-1.058]	Affymetrix [15688218] (imputed)	N
1563	chr6	128292070	128292071	rs3933376	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	6q22.33		rs3933376-?	NR	5E-12				NR [~ 8900000] (imputed)	N
1563	chr6	128293561	128293562	rs55743914	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6q22.33	NR	rs55743914-?	NR	3E-10				Affymetrix [~ 8270000] (imputed)	N
1563	chr6	128293561	128293562	rs55743914	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	6q22.33	PTPRK	rs55743914-?	NR	2E-15		1.071	[1.05-1.09]	Affymetrix [9000000] (imputed)	N
1563	chr6	128293561	128293562	rs55743914	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	6q22.33	PTPRK	rs55743914-T	NR	7E-15		1.064	[1.05-1.08]	Affymetrix [9000000] (imputed)	N
1563	chr6	128293561	128293562	rs55743914	22057235	Trynka G	2011-11-06	Nat Genet	Dense genotyping identifies and localizes multiple common and rare variant association signals in celiac disease.	Celiac disease	11,812 European ancestry cases, 229 Indian ancestry cases, 11,837 European ancestry controls, 391 Indian ancestry controls	NA	6q22.33	PTPRK	rs55743914-T	0.239	1E-18		1.21		Illumina [139553]	N
1563	chr6	128294708	128294709	rs35469349	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	6q22.33	PTPRK	rs35469349-A	0.26	2E-10		1.037	[1.03-1.05]	Affymetrix, Illumina [8307659] (imputed)	N
1563	chr6	128309767	128309768	rs13200150	30531953	International League Against Epilepsy Consortium on Complex Epilepsies	2018-12-10	Nat Commun	Genome-wide mega-analysis identifies 16 loci and highlights diverse biological mechanisms in the common epilepsies.	Generalized epilepsy	3,708 European ancestry cases, 61 African American cases, 24,218 European ancestry controls, 2,584 African American controls	NA	6q22.33	NR	rs13200150-G	0.3	6E-9		5.82	NR unit decrease	Affymetrix, Illumina [~ 5000000] (imputed)	N
1564	chr6	128327030	128327031	rs45582334	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	6q22.33		rs45582334-A	0.691	8E-10		0.008	[0.006-0.01] unit increase	NR [NR] (imputed)	N
1564	chr6	128328832	128328833	rs7742212	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	6q22.33	NR	rs7742212-A	NR	9E-6		1.05	[NR]	Illumina [7158791] (imputed)	N
1564	chr6	128332083	128332084	rs13219424	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Reaction time	330,024 British ancestry individuals	NA	6q22.33		rs13219424-?	NR	1E-8				NR [7857346] (imputed)	N
1564	chr6	128332083	128332084	rs13219424	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	6q22.33	NR	rs13219424-T	0.314	2E-9		0.00708586	[0.0048-0.0094] unit decrease	NR [9732723] (imputed)	N
1564	chr6	128332083	128332084	rs13219424	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6q22.33		rs13219424-T	0.3169	5E-12	(conditional-joint)	0.0104	[0.0075-0.0133] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1564	chr6	128332083	128332084	rs13219424	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6q22.33	Intergenic	rs13219424-T	0.3169	7E-15	(MTAG)	0.011	[0.0083-0.0137] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1564	chr6	128332083	128332084	rs13219424	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	6q22.33	PTPRK	rs13219424-?	NR	1E-8		0.0098881	[0.0065-0.0133] unit decrease	Affymetrix [805426] (imputed)	N
1564	chr6	128333681	128333682	rs13197257	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	6q22.33	Intergenic	rs13197257-T	0.2747	2E-10	(MTAG)	0.0117	[0.0082-0.0152] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1564	chr6	128333681	128333682	rs13197257	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6q22.33		rs13197257-T	0.279	3E-12		0.0109	[0.0078-0.014] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1564	chr6	128333681	128333682	rs13197257	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6q22.33	NR	rs13197257-?	NR	6E-8		5.415	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1564	chr6	128344784	128344785	rs17055223	29947131	Smit DJA	2018-06-26	Hum Brain Mapp	Genome-wide association analysis links multiple psychiatric liability genes to oscillatory brain activity.	Electroencephalogram traits	up to 8,425 European and unknown ancestry individuals	NA	6q22.33	NR	rs17055223-?	NR	3E-7	(deltaCz)	5.115	z score increase	Affymetrix, Illumina, Perlegen [at least 4959085] (imputed)	N
1564	chr6	128355315	128355316	rs9321106	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	6q22.33		rs9321106-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1564	chr6	128390979	128390980	rs6938574	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	6q22.33	PTPRK	rs6938574-T	0.16	2E-9		0.04	[0.026-0.054] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
1564	chr6	128434931	128434932	rs6938199	30196971	Bray MJ	2018-09-01	Fertil Steril	Transethnic and race-stratified genome-wide association study of fibroid characteristics in African American and European American women.	Uterine fibroid size (maximum volume)	1,048 African American or European ancestry female individuals	NA	6q22.33	PTPRK	rs6938199-G	0.1	4E-7	(AA)	0.41	[0.25-0.56] unit decrease	Affymetrix [up to 9597202] (imputed)	N
1565	chr6	128492181	128492182	rs10499138	20068591	Van Laer L	2010-01-13	Eur J Hum Genet	A genome-wide association study for age-related hearing impairment in the Saami.	Hearing impairment	347 Finnish Saami individuals	NA	6q22.33	NR	rs10499138-A	0.25	2E-6	(PC2)			Affymetrix [83381]	N
1565	chr6	128559603	128559604	rs550320694	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	6q22.33	PTPRK	rs550320694-T	0.9971	7E-7		1.3956	[0.84-1.95] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1565	chr6	128559603	128559604	rs550320694	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	6q22.33	PTPRK	rs550320694-T	0.9971	7E-7		1.3956	[0.84-1.95] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1566	chr6	128586395	128586396	rs1768353	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	6q22.33	NR	rs1768353-?	NR	3E-9				Affymetrix [NR]	N
1566	chr6	128593589	128593590	rs140171690	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6q22.33	PTPRK	rs140171690-T	NR	9E-6	(men)	0.0894889	[0.05-0.129] unit increase	Illumina [13520550] (imputed)	N
1566	chr6	128598159	128598160	rs74420210	32790701	Rode M	2020-08-13	PLoS One	Genome-wide association analysis of pulse wave velocity traits provide new insights into the causal relationship between arterial stiffness and blood pressure.	Arterial stiffness (brachial-femoral pulse wave velocity)	3,643 European ancestry individuals	NA	6q22.33	PTPRK	rs74420210-T	0.01	5E-7		0.19	[0.12-0.26] unit increase	Affymetrix [11342744] (imputed)	N
1567	chr6	128831587	128831588	rs150582742	31324189	Kim W	2019-07-19	Respir Res	DSP variants may be associated with longitudinal change in quantitative emphysema.	Emphysema annual change measurement in smokers (adjusted lung density)	4,427 European ancestry individuals, 1,158 African American individuals	NA	6q22.33	PTPRK	rs150582742-C	0.034	6E-6	(EA)	0.282	[0.16-0.4] unit decrease	Illumina [NR] (imputed)	N
1567	chr6	128839469	128839470	rs6923822	33562295	Coltell O	2021-02-07	Nutrients	Circulating Adiponectin and Its Association with Metabolic Traits and Type 2 Diabetes: Gene-Diet Interactions Focusing on Selected Gene Variants and at the Genome-Wide Level in High-Cardiovascular Risk Mediterranean Subjects.	Adiponectin levels	348 European ancestry high cardiovascular risk elderly men	NA	6q22.33	PTPRK	rs6923822-A	0.156	7E-6		0.251	[NR] unit decrease	Illumina [625127]	N
1568	chr6	128944676	128944677	rs6935086	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	6q22.33		rs6935086-T	0.8871	6E-9		0.02	[0.014-0.026] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
1568	chr6	128946143	128946144	rs1997969	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6q22.33	NR	rs1997969-?	NR	4E-6		0.2756	[0.16-0.39] unit increase	Illumina [at least 560000] (imputed)	N
1569	chr6	128980677	128980678	rs542925	28927378	Qian DC	2017-09-19	BMC Genomics	Genome-wide imaging association study implicates functional activity and glial homeostasis of the caudate in smoking addiction.	Caudate activity during reward	106 individuals	NA	6q22.33	NR	rs542925-T	0.330097	2E-6		0.7203378	[0.44-1] unit decrease	Illumina [at least 621854] (imputed)	N
1569	chr6	129013158	129013159	rs17380173	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6q22.33	LAMA2	rs17380173-?	NR	2E-7	(creatinine)	0.5900155	[0.37-0.81] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1569	chr6	129085420	129085421	rs11962701	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	6q22.33	Y_RNA, LAMA2, MESTP1, EEF1DP5	rs11962701-T	NR	7E-6	(sleep onset irregularity)	0.08687	[0.049-0.125] unit decrease	Affymetrix [7141204] (imputed)	N
1570	chr6	129131414	129131415	rs138525295	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Lean body mass	3,399 whole genome sequenced individuals, 11,801 European ancestry individuals	10,676 European ancestry individuals	6q22.33	Y_RNA	rs138525295-T	0.9604	6E-7		0.1499	[0.091-0.209] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1570	chr6	129146425	129146426	rs1508442	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6q22.33	PTPRK	rs1508442-?	NR	1E-6	(creatinine)	0.16735528	[0.099-0.235] unit increase	Affymetrix [at least 2500000] (imputed)	N
1571	chr6	129237872	129237873	rs139280910	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Bifidobacterium angulatum abundance in stool	5,959 Finnish ancestry individuals	NA	6q22.33		rs139280910-T	0.0220501	7E-9		0.27243	[0.18-0.36] unit increase	Illumina [7980478] (imputed)	N
1571	chr6	129305251	129305252	rs12201645	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6q22.33	NR	rs12201645-?	NR	7E-6		4.486	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1571	chr6	129310675	129310676	rs529876593	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6q22.33	NR	rs529876593-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
1571	chr6	129348437	129348438	rs9372915	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	6q22.33	NR	rs9372915-A	0.715	1E-10		0.00769816	[0.0053-0.01] unit increase	NR [9732723] (imputed)	N
1571	chr6	129353670	129353671	rs9402093	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	6q22.33		rs9402093-G	0.3	2E-12		0.009	[0.007-0.011] unit decrease	NR [NR] (imputed)	N
1572	chr6	129374071	129374072	rs11757516	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6q22.33	Intergenic	rs11757516-C	0.268	5E-8	(MTAG)	0.0081	[0.0052-0.011] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1572	chr6	129425563	129425564	rs9388686	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	6q22.33	LAMA2	rs9388686-A	0.1773	4E-8		0.01442028	[0.0093-0.0196] unit decrease	Affymetrix [11514654] (imputed)	N
1573	chr6	129521327	129521327	rs1278208683	33574277	Kawai Y	2021-02-11	NPJ Genom Med	Mapping of susceptible variants for cold medicine-related Stevens-Johnson syndrome by whole-genome resequencing.	Cold medicine-related Stevens-Johnson syndrome/toxic epidermal necrolysis (SJS/TEN) with severe ocular complications	133 Japanese ancestry cases, 418 Japanese ancestry controls	NA	6q22.33		rs1278208683-ACG	0.07143	9E-7		5.282		Illumina [7608150]	N
1573	chr6	129604645	129604646	rs12199493	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	6q22.33	LAMA2	rs12199493-T	0.154020330522782	3E-7	(G_Aestuariispira_RNT)	0.367785	[0.23-0.51] unit increase	Illumina [7711310] (imputed)	N
1574	chr6	129681452	129681453	rs12190405	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Tea consumption	336,898 European ancestry individuals	39,924 European ancestry individuals	6q22.33	LAMA2	rs12190405-T	0.7832	4E-6		0.0086	[0.0049-0.0123] unit increase	Affymetrix [~ 7740000] (imputed)	N
1574	chr6	129700263	129700264	rs6904763	30621171	Coltell O	2019-01-04	Nutrients	Genome-Wide Association Study (GWAS) on Bilirubin Concentrations in Subjects with Metabolic Syndrome: Sex-Specific GWAS Analysis and Gene-Diet Interactions in a Mediterranean Population.	Serum bilirubin levels x Mediterranean diet adherence interaction in metabolic syndrome	257 European ancestry individuals with low adherence to Mediterranean diet, 161 European ancestry individuals with high adherence to Mediterranean diet	NA	6q22.33	LAMA2	rs6904763-C	0.126	5E-6				Illumina [622468]	N
1574	chr6	129707117	129707118	rs7770270	30621171	Coltell O	2019-01-04	Nutrients	Genome-Wide Association Study (GWAS) on Bilirubin Concentrations in Subjects with Metabolic Syndrome: Sex-Specific GWAS Analysis and Gene-Diet Interactions in a Mediterranean Population.	Serum bilirubin levels x Mediterranean diet adherence interaction in metabolic syndrome	257 European ancestry individuals with low adherence to Mediterranean diet, 161 European ancestry individuals with high adherence to Mediterranean diet	NA	6q22.33	LAMA2	rs7770270-A	0.112	2E-6				Illumina [622468]	N
1574	chr6	129721482	129721483	rs2326816	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	6q22.33	LAMA2, ARHGAP18, BMPR1APS1	rs2326816-C	NR	6E-6	(sleep onset)	0.1914	[0.11-0.27] unit decrease	Affymetrix [7141204] (imputed)	N
1575	chr6	129783190	129783191	rs140242998	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	6q22.33		rs140242998-T	0.014178	1E-5		0.12773	[0.071-0.184] unit increase	Affymetrix [15580782] (imputed)	N
1575	chr6	129783641	129783642	rs7755729	24529757	Xie T	2014-01-17	Neurobiol Aging	Genome-wide association study combining pathway analysis for typical sporadic amyotrophic lateral sclerosis in Chinese Han populations.	Amyotrophic lateral sclerosis (sporadic)	250 Han Chinese ancestry cases, 250 Han Chinese ancestry controls	NA	6q22.33	LAMA2	rs7755729-?		3E-6				Illumina [859311]	N
1575	chr6	129820037	129820038	rs12193446	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	6q22.33	BC035400, LAMA2	rs12193446-?	NR	2E-32		0.408809	[0.34-0.48] unit decrease	NR [13958389] (imputed)	N
1575	chr6	129820037	129820038	rs12193446	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia	11,197 European ancestry low myopic cases, 21,416 European ancestry emmetropia controls	NA	6q22.33	NR	rs12193446-?	NR	2E-13		0.213107	[0.16-0.27] unit decrease	NR [13958389] (imputed)	N
1575	chr6	129820037	129820038	rs12193446	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Hyperopia	10,828 European ancestry hyperopia cases, 21,416 European ancestry emmetropia controls	NA	6q22.33	BC035400, LAMA2	rs12193446-?	NR	3E-14		0.213424	[0.16-0.27] unit increase	NR [13958389] (imputed)	N
1575	chr6	129820037	129820038	rs12193446	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	6q22.33	BC035400, LAMA2	rs12193446-?	NR	5E-20		0.493118	[0.39-0.6] unit decrease	NR [13958389] (imputed)	N
1575	chr6	129820037	129820038	rs12193446	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	6q22.33	NR	rs12193446-G		4E-107		0.42	[0.38-0.46] unit increase	NR [NR]	N
1575	chr6	129820037	129820038	rs12193446	31816047	Boutin TS	2019-12-09	Hum Mol Genet	Insights into the genetic basis of retinal detachment.	Retinal detachment or retinal break	3,977 British ancestry cases, 360,233 British ancestry controls	NA	6q22.33	LAMA2	rs12193446-G	0.904	8E-7		1.2277521	1.13826022-1.32427996	Affymetrix, Illumina [7701827] (imputed)	N
1575	chr6	129820037	129820038	rs12193446	31816047	Boutin TS	2019-12-09	Hum Mol Genet	Insights into the genetic basis of retinal detachment.	High myopia	2,737 British ancestry cases, 47,635 British ancestry controls	NA	6q22.33	LAMA2	rs12193446-A	0.899	7E-23		1.718953	[1.569216-1.882978]	Affymetrix [NR] (imputed)	N
1575	chr6	129820037	129820038	rs12193446	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	6q22.33	BC035400, LAMA2	rs12193446-A	0.9063	4E-84		19.431	[NR] z score decrease	Affymetrix, Illumina [~ 11000000] (imputed)	N
1575	chr6	129820037	129820038	rs12193446	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent	41,073 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	6q22.33	NR	rs12193446-A	0.9068	1E-16		0.2167	[0.17-0.27] unit decrease	Affymetrix, Illumina [~ 9300000] (imputed)	N
1575	chr6	129820037	129820038	rs12193446	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent	41,073 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	6q22.33	NR	rs12193446-A	0.906	6E-16	(EA)	0.2132	[0.16-0.26] unit decrease	Affymetrix, Illumina [~ 9300000] (imputed)	N
1575	chr6	129820037	129820038	rs12193446	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Myopia (age of diagnosis)	104,293 European ancestry individuals	NA	6q22.33	NR	rs12193446-A	0.9058	4E-86		0.2514	[0.23-0.28] unit decrease	Illumina [~ 10600000] (imputed)	N
1575	chr6	129820037	129820038	rs12193446	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Myopia	106,086 European ancestry cases, 85,757 European ancestry controls	NA	6q22.33	LAMA2	rs12193446-?	NR	5E-102		1.3003901	[1.27-1.33]	Illumina [13762925] (imputed)	N
1575	chr6	129820037	129820038	rs12193446	27020472	Fan Q	2016-03-29	Nat Commun	Meta-analysis of gene-environment-wide association scans accounting for education level identifies additional loci for refractive error.	Spherical equivalent (joint analysis main effects and education interaction)	2,604 Erasmus Rucphen population isolate individuals, 456 Sardinian population isolate individuals, 36,976 European ancestry individuals, 5,971 East Asian ancestry individuals, 2,256 Malay ancestry individuals, 2,088 Indian ancestry individuals	NA	6q22.33	LAMA2	rs12193446-A	0.09	1E-21	(European ancestry)			Affymetrix, Illumina [up to 7331415] (imputed)	N
1575	chr6	129820037	129820038	rs12193446	27020472	Fan Q	2016-03-29	Nat Commun	Meta-analysis of gene-environment-wide association scans accounting for education level identifies additional loci for refractive error.	Spherical equivalent (joint analysis main effects and education interaction)	2,604 Erasmus Rucphen population isolate individuals, 456 Sardinian population isolate individuals, 36,976 European ancestry individuals, 5,971 East Asian ancestry individuals, 2,256 Malay ancestry individuals, 2,088 Indian ancestry individuals	NA	6q22.33	LAMA2	rs12193446-A	0.09	1E-21				Affymetrix, Illumina [up to 7331415] (imputed)	N
1575	chr6	129820037	129820038	rs12193446	25233373	Simpson CL	2014-09-18	PLoS One	Genome-wide meta-analysis of myopia and hyperopia provides evidence for replication of 11 loci.	Myopia	3,923 European ancestry cases, 11,696 European ancestry controls	1,410 European ancestry cases, 2,921 cases, 3,171 European ancestry controls, 998 controls	6q22.33	LAMA2	rs12193446-?		9E-6				Affymetrix, Illumina [up to 3397980] (imputed)	N
1575	chr6	129820037	129820038	rs12193446	25233373	Simpson CL	2014-09-18	PLoS One	Genome-wide meta-analysis of myopia and hyperopia provides evidence for replication of 11 loci.	Hyperopia	7,068 European ancestry cases, 6,844 European ancestry controls	1,554 European ancestry cases, 892 cases, 1,654 European ancestry controls, 2,921 controls	6q22.33	LAMA2	rs12193446-?		2E-7				Affymetrix, Illumina [up to 3397980] (imputed)	N
1575	chr6	129820037	129820038	rs12193446	24144296	Cheng CY	2013-08-08	Am J Hum Genet	Nine loci for ocular axial length identified through genome-wide association studies, including shared loci with refractive error.	Axial length	12,531 European ancestry individuals	8,216 Asian ancestry individuals	6q22.33	ARHGAP18, LAMA2	rs12193446-A	0.9092	1E-8		0.1219	[0.08-0.164] unit increase	Illumina [2500000] (imputed)	N
1575	chr6	129822836	129822837	rs9321170	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	6q22.33	LAMA2	rs9321170-A	0.7272	1E-16		0.0176	[0.013-0.022] unit increase	Affymetrix [18391927] (imputed)	N
1575	chr6	129824753	129824754	rs6923431	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6q22.33		rs6923431-?	NR	4E-30				NR [~ 8900000] (imputed)	N
1575	chr6	129829599	129829600	rs2571571	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	6q22.33	NR	rs2571571-G		5E-9		0.07	[0.05-0.09] unit increase	NR [NR]	N
1575	chr6	129830340	129830341	rs2571573	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	6q22.33	LAMA2	rs2571573-?	NR	2E-11		0.01998251	[0.014-0.026] unit increase	Illumina [27896057] (imputed)	N
1575	chr6	129834628	129834629	rs12205363	23396134	Verhoeven VJ	2013-02-10	Nat Genet	Genome-wide meta-analyses of multiancestry cohorts identify multiple new susceptibility loci for refractive error and myopia.	Refractive error	37,382 European ancestry individuals, 3,995 Chinese ancestry individuals, 2,273 Malay ancestry individuals, 2,108 Indian ancestry individuals	NA	6q22.33	LAMA2	rs12205363-C	0.1	2E-12		0.235	[0.17-0.3] unit increase	Affymetrix, Illumina [2500000] (imputed)	N
1575	chr6	129836335	129836336	rs13208666	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	6q22.33		rs13208666-C	0.45	6E-9		5.8	z score increase	Affymetrix [9061022] (imputed)	N
1575	chr6	129836335	129836336	rs13208666	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	6q22.33	NR	rs13208666-C	0.4702	2E-9				NR [9056863] (imputed)	N
1575	chr6	129837609	129837610	rs1049476	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	6q22.33		rs1049476-C	0.29	1E-11		6.77	z score increase	Affymetrix [9061022] (imputed)	N
1575	chr6	129837609	129837610	rs1049476	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	6q22.33		rs1049476-C	0.29	4E-14		7.58	z score increase	Affymetrix [9061022] (imputed)	N
1575	chr6	129844018	129844019	rs17809707	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	6q22.33	NR	rs17809707-C	0.4296	2E-12				NR [9056863] (imputed)	N
1575	chr6	129848634	129848635	rs9321171	30846698	Dashti HS	2019-03-07	Nat Commun	Genome-wide association study identifies genetic loci for self-reported habitual sleep duration supported by accelerometer-derived estimates.	Sleep duration (short sleep)	106,192  European ancestry cases, 305,742 European ancestry controls	47,180  adults, 10,554 children or adolescents	6q22.33	LAMA2	rs9321171-C	NR	4E-8		1.032		NR [14661600] (imputed)	N
1575	chr6	129861391	129861392	rs2275215	20397748	Liu JZ	2010-04-01	Twin Res Hum Genet	Genome-wide association study of height and body mass index in Australian twin families.	Body mass index	11,536 European ancestry individuals	NA	6q22.33	LAMA2	rs2275215-T	0.73	4E-7		0.09	[0.05-0.13] SD decrease	Illumina [559712] (imputed)	N
1575	chr6	129872965	129872966	rs10457525	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6q22.33	NR	rs10457525-T	0.175	6E-6	(IFNalpha_CXCL10_of_CD56brightCD16n)			Illumina [5084123] (imputed)	N
1575	chr6	129874354	129874355	rs7749983	24347629	Shaffer JR	2013-12-17	G3 (Bethesda)	Genome-wide association study of periodontal health measured by probing depth in adults ages 18-49 years.	Periodontal disease-related phenotype (Socransky)	93 European ancestry cases, 83 European ancestry individuals, 497 European ancestry controls	NA	6q22.33	ARHGAP18, LAMA2	rs7749983-?	0.19	2E-6	(PD1)	2.39	[NR]	Illumina [~ 1400000] (imputed)	N
1576	chr6	129896500	129896501	rs10457526	29460428	Gelernter J	2018-02-20	Alcohol Clin Exp Res	Genomewide association study of alcohol dependence and related traits in a Thai population.	Response to alcohol consumption (flushing response)	537 Thai ancestry individuals with flushing response, 508 Thai ancestry individuals without flushing response	NA	6q22.33	intergenic	rs10457526-G	0.7298	5E-6		0.4796	[0.27-0.69] unit increase	Illumina [at least 4683137] (imputed)	N
1576	chr6	129919388	129919389	rs150859440	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		ARHGAP18	rs150859440-?	NR	2E-8	(female)	0.483547	[NR] unit increase	Affymetrix [NR] (imputed)	N
1576	chr6	129965353	129965354	rs9372944	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	6q22.33	ARHGAP18	rs9372944-G	0.755522	2E-10		0.0136101	[0.0094-0.0178] unit decrease	NR [13737936] (imputed)	N
1576	chr6	129971543	129971544	rs4479964	26528553	Davenport ER	2015-11-03	PLoS One	Genome-Wide Association Studies of the Human Gut Microbiota.	Gut microbiome composition (summer)	91 Hutterite individuals	NA	6q22.33	NR	rs4479964-?	NR	7E-6	(genus_Bifidobacterium)	0.6677698	[0.37-0.96] unit increase	Affymetrix [210924]	N
1576	chr6	129987491	129987492	rs13204501	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	6q22.33		rs13204501-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1576	chr6	130008444	130008445	rs12660691	23648065	Low SK	2013-05-04	Cancer Sci	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (docetaxel)	147 Japanese ancestry cases, 233 Japanese ancestry controls	NA	6q22.33	ARHGAP18	rs12660691-A	0.819	4E-6	(Allelic model)	3.199	[1.899-5.391]	Illumina [733202]	N
1576	chr6	130009273	130009274	rs75457925	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	6q22.33	NR	rs75457925-A	0.965024	1E-11		0.035764	[0.025-0.046] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
1576	chr6	130019353	130019354	rs17057640	24684796	Cox AJ	2014-03-11	Neurobiol Aging	Heritability and genetic association analysis of cognition in the Diabetes Heart Study.	Cognitive function	423 type 2 diabetes cases and 127 unaffected siblings from 257 families	NA	6q22.33	ARHGAP18	rs17057640-C	0.095	5E-6	(3MSE)	3.0069	[1.73-4.28] unit decrease	Affymetrix [> 371951] (imputed)	N
1577	chr6	130024199	130024200	rs1023480	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q22.33	NR	rs1023480-G	0.42966	2E-10				Affymetrix, Illumina [17210439] (imputed)	N
1577	chr6	130026808	130026809	rs57574422	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	6q22.33	NR	rs57574422-T		4E-9		0.13	[0.091-0.169] unit increase	NR [NR]	N
1577	chr6	130031492	130031493	rs17057678	22808956	Lyons PA	2012-07-19	N Engl J Med	Genetically distinct subsets within ANCA-associated vasculitis.	Antineutrophil cytoplasmic antibody-associated vasculitis	914 European ancestry cases, 5,259 European ancestry controls	1,454 European ancestry cases, 1,666 European ancestry controls	6q22.33	ARHGAP18	rs17057678-?	NR	6E-7		1.25	[NR]	Affymetrix [NR]	N
1577	chr6	130094397	130094398	rs2326864	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6q22.33	ARHGAP18	rs2326864-?	NR	3E-7	(TAG 54:3)	0.25802696	[0.16-0.36] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1578	chr6	130190756	130190757	rs17755849	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6q22.33		rs17755849-?	NR	1E-20				NR [~ 8900000] (imputed)	N
1578	chr6	130216509	130216510	rs9375674	22044751	Foster MC	2011-11-01	BMC Med Genet	Heritability and genome-wide association analysis of renal sinus fat accumulation in the Framingham Heart Study.	Renal sinus fat	2,809 European ancestry individuals	NA	6q22.33	C6orf191	rs9375674-A	0.46	6E-6		0.158	[0.089-0.227] unit increase	Affymetrix [~ 2500000] (imputed)	N
1578	chr6	130218801	130218802	rs6921288	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	6q22.33	TMEM244	rs6921288-A	NR	2E-7		1.0586	NR	Affymetrix, Illumina [8278136] (imputed)	N
1578	chr6	130265265	130265266	rs35164294	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	6q22.33	NR	rs35164294-G	0.9288	1E-8		0.0525	[0.034-0.071] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1578	chr6	130284345	130284346	rs17757727	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	6q22.33	NR	rs17757727-?	NR	5E-6		13.681	NR unit increase	Affymetrix [at least 600000] (imputed)	N
1579	chr6	130319526	130319527	rs6920244	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	6q22.33	TMEM244, L3MBTL3	rs6920244-?	NR	5E-12		0.03277956	[0.023-0.042] unit increase	Illumina [27896057] (imputed)	N
1579	chr6	130328249	130328249	rs10630622	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6q23.1	L3MBTL3	rs10630622-A	NR	1E-10		0.0197016	[0.014-0.026] unit increase	Affymetrix [321016] (imputed)	N
1579	chr6	130334033	130334034	rs9492436	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	6q23.1	Intergenic	rs9492436-T	0.1026	1E-9	(MTAG)	0.0166	[0.011-0.022] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1579	chr6	130334033	130334034	rs9492436	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6q23.1	Intergenic	rs9492436-T	0.1006	4E-9	(MTAG)	0.0128	[0.0085-0.0171] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1579	chr6	130336552	130336553	rs6569646	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6q23.1	L3MBTL3	rs6569646-T	NR	5E-12		0.0231462	[0.017-0.03] unit increase	Affymetrix [323123] (imputed)	N
1579	chr6	130337265	130337266	rs6569647	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	6q23.1		rs6569647-C	0.402344	4E-36		0.0257043	[0.022-0.03] unit decrease	Illumina [13479295] (imputed)	N
1579	chr6	130337265	130337266	rs6569647	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	6q23.1	TMEM244, L3MBTL3	rs6569647-?	NR	5E-43		0.039843567	[0.034-0.046] unit decrease	Illumina [27896057] (imputed)	N
1579	chr6	130337265	130337266	rs6569647	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	6q23.1	L3MBTL3	rs6569647-T	0.801817	6E-10		0.020035	[0.014-0.026] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1579	chr6	130341234	130341235	rs113898003	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	6q23.1		rs113898003-C	0.27	6E-12		6.87	z score increase	Affymetrix [9061022] (imputed)	N
1579	chr6	130341234	130341235	rs113898003	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	6q23.1		rs113898003-C	NR	1E-10		0.0137	[0.0096-0.0178] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
1579	chr6	130341234	130341235	rs113898003	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	6q23.1		rs113898003-C	NR	8E-11		0.0134	[0.0093-0.0175] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1579	chr6	130341234	130341235	rs113898003	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	6q23.1		rs113898003-C	NR	2E-8		0.0124	[0.0081-0.0167] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
1579	chr6	130341234	130341235	rs113898003	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	6q23.1	NR	rs113898003-C	0.2636	2E-10				NR [9056863] (imputed)	N
1579	chr6	130341234	130341235	rs113898003	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6q23.1	L3MBTL3	rs113898003-C	NR	2E-11		0.0213888	[0.015-0.028] unit decrease	Affymetrix [321016] (imputed)	N
1579	chr6	130341234	130341235	rs113898003	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6q23.1		rs113898003-?	NR	8E-31		0.0259576	[0.021-0.031] unit decrease	Affymetrix [20259828] (imputed)	N
1579	chr6	130341234	130341235	rs113898003	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6q23.1	L3MBTL3	rs113898003-T	0.7429	9E-9		0.046	[0.03-0.062] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1579	chr6	130341728	130341728	rs55941023	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	6q23.1		rs55941023-CT	NR	9E-14		0.0173	[0.013-0.022] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
1579	chr6	130345790	130345791	rs1415700	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	6q23.1		rs1415700-A	NR	6E-45		0.03	[0.026-0.034] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1579	chr6	130345790	130345791	rs1415700	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	6q23.1		rs1415700-A	NR	2E-12		0.0169	[0.012-0.022] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
1579	chr6	130345834	130345835	rs1415701	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	6q23.1		rs1415701-A	0.28	2E-15		7.98	z score increase	Affymetrix [9061022] (imputed)	N
1579	chr6	130345834	130345835	rs1415701	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	6q23.1		rs1415701-A	0.467322	1E-22		0.0264813	[0.021-0.032] unit decrease	Illumina [13479924] (imputed)	N
1579	chr6	130345834	130345835	rs1415701	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6q23.1	L3MBTL3	rs1415701-A	NR	1E-10		0.0225424	[0.016-0.029] unit decrease	Affymetrix [323123] (imputed)	N
1579	chr6	130345834	130345835	rs1415701	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6q23.1	L3MBTL3	rs1415701-A	NR	4E-9		0.0190795	[0.013-0.025] unit increase	Affymetrix [321169] (imputed)	N
1579	chr6	130345834	130345835	rs1415701	31681408	Yang XL	2019-10-11	Front Genet	Three Novel Loci for Infant Head Circumference Identified by a Joint Association Analysis.	Birth weight (MTAG)	up to 182,902 European ancestry individuals	NA	6q23.1	NR	rs1415701-A	0.26	3E-9		0.025166119	[0.017-0.034] unit decrease	NR [1977400] (imputed)	N
1579	chr6	130345834	130345835	rs1415701	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	6q23.1	NR	rs1415701-?	NR	1E-6		0.02838707	[0.017-0.04] unit decrease	Illumina [34656550] (imputed)	N
1579	chr6	130345834	130345835	rs1415701	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	6q23.1	L3MBTL3	rs1415701-G	0.729476	6E-10		0.021579	[0.015-0.028] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
1579	chr6	130345834	130345835	rs1415701	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	6q23.1	L3MBTL3	rs1415701-G	0.73784	2E-14		0.0173778	[0.013-0.022] unit decrease	NR [13737936] (imputed)	N
1579	chr6	130345834	130345835	rs1415701	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	6q23.1	NR	rs1415701-A	0.263749	1E-8		0.0202912	[0.013-0.027] unit increase	NR [19129689] (imputed)	N
1579	chr6	130345834	130345835	rs1415701	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6q23.1		rs1415701-?	NR	1E-29		0.0254901	[0.021-0.03] unit decrease	Affymetrix [20259828] (imputed)	N
1579	chr6	130345834	130345835	rs1415701	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	6q23.1	L3MBTL3	rs1415701-G	0.731889	4E-10	(women)	0.0313836	[0.021-0.042] unit decrease	NR [17166351] (imputed)	N
1579	chr6	130345834	130345835	rs1415701	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	6q23.1	L3MBTL3	rs1415701-G	0.731758	4E-14		0.0285253	[0.021-0.036] unit decrease	NR [17166351] (imputed)	N
1579	chr6	130345834	130345835	rs1415701	27680694	Horikoshi M	2016-10-13	Nature	Genome-wide associations for birth weight and correlations with adult disease.	Birth weight	133,903 European ancestry individuals, 6,635 African American individuals, 420 Turkish ancestry individuals, 365 Moroccan ancestry individuals, 395 Surinamese ancestry individuals, 840 Chinese ancestry individuals.	9,799 European ancestry individuals, 1,449 Filipino ancestry individuals.	6q23.1	L3MBTL3	rs1415701-G	0.73	4E-11		0.027	[0.019-0.035] unit increase	Affymetrix, Illumina [at least 22434434] (imputed)	N
1579	chr6	130345834	130345835	rs1415701	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	6q23.1	L3MBTL3	rs1415701-A	0.39	1E-24		0.056	[0.044-0.068] unit decrease	Affymetrix, Illumina [2704730] (imputed)	N
1579	chr6	130345834	130345835	rs1415701	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	6q23.1	L3MBTL3	rs1415701-G	0.73	5E-13		1.19	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
1579	chr6	130346104	130346105	rs7740188	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	6q23.1	L3MBTL3	rs7740188-A	0.69	1E-11		6.78	z-score increase	Affymetrix [4314223] (imputed)	N
1579	chr6	130346104	130346105	rs7740188	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	6q23.1	L3MBTL3	rs7740188-A	0.69	6E-12		6.88	z-score increase	Affymetrix [4312306] (imputed)	N
1579	chr6	130346104	130346105	rs7740188	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	6q23.1	NR	rs7740188-?	NR	9E-34		0.2905	[0.24-0.34] unit decrease	Affymetrix [7794483] (imputed)	N
1579	chr6	130346104	130346105	rs7740188	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	6q23.1	NR	rs7740188-?	NR	6E-22	(female)	0.25115	[0.2-0.3] unit decrease	Affymetrix [7794483] (imputed)	N
1579	chr6	130346104	130346105	rs7740188	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	6q23.1	NR	rs7740188-?	NR	4E-17	(male)	0.3198	[0.25-0.39] unit decrease	Affymetrix [7794483] (imputed)	N
1579	chr6	130348256	130348257	rs75191738	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6q23.1	L3MBTL3	rs75191738-T	NR	3E-12		0.0300107	[0.022-0.038] unit decrease	Affymetrix [323123] (imputed)	N
1579	chr6	130349118	130349119	rs6569648	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	6q23.1		rs6569648-T	NR	5E-98		0.0381	[0.035-0.042] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1579	chr6	130349118	130349119	rs6569648	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6q23.1	L3MBTL3	rs6569648-T	0.760422	4E-9		0.015137563	[0.01-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1579	chr6	130349118	130349119	rs6569648	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6q23.1	L3MBTL3	rs6569648-T	0.760433	7E-13		0.018440798	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1579	chr6	130349118	130349119	rs6569648	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q23.1	NR	rs6569648-T	0.794893	2E-14				Affymetrix, Illumina [23472807] (imputed)	N
1579	chr6	130349118	130349119	rs6569648	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	6q23.1	NR	rs6569648-T	0.761261	3E-17		0.018727	[0.014-0.023] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1579	chr6	130349118	130349119	rs6569648	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	6q23.1		rs6569648-T	NR	2E-12		1.05	[1.04-1.07]	Affymetrix, Illumina [NR] (imputed)	N
1579	chr6	130349118	130349119	rs6569648	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	6q23.1	L3MBTL3	rs6569648-?	NR	8E-10		0.047827374	[0.033-0.063] unit decrease	Illumina [27896057] (imputed)	N
1579	chr6	130349118	130349119	rs6569648	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	6q23.1		rs6569648-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1579	chr6	130349118	130349119	rs6569648	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	6q23.1	NR	rs6569648-C	NR	5E-12		0.013	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
1579	chr6	130349118	130349119	rs6569648	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6q23.1	L3MBTL3	rs6569648-T	0.76	3E-12	(EA)	1.0638298	[1.04-1.09] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
1579	chr6	130349118	130349119	rs6569648	29058716	Milne RL	2017-10-23	Nat Genet	Identification of ten variants associated with risk of estrogen-receptor-negative breast cancer.	Breast cancer (estrogen-receptor negative)	14,135 European ancestry cases, 58,126 European ancestry controls	7,333 European ancestry cases, 42,468 European ancestry controls	6q23.1	L3MBTL3	rs6569648-T	0.77	4E-8		1.0752687	[1.05-1.11]	Illumina [~ 11500000] (imputed)	N
1579	chr6	130349118	130349119	rs6569648	29058716	Milne RL	2017-10-23	Nat Genet	Identification of ten variants associated with risk of estrogen-receptor-negative breast cancer.	Breast cancer	14,135 European ancestry ER- cases, 58,126 European ancestry controls, 7,784 European ancestry  BRCA1 carrrier cases, 7,782 European ancestry BRCA1 carrrier controls	7,333 European ancestry ER- cases, 42,468 European ancestry controls, 1,630 European ancestry BRCA1 carrrier cases, 1,712 European ancestry BRCA1 carrrier controls	6q23.1	L3MBTL3	rs6569648-T	0.77	8E-10		1.0752687	[1.05-1.11] (BCAC)	Illumina [~ 11500000] (imputed)	N
1579	chr6	130349118	130349119	rs6569648	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	6q23.1	L3MBTL3	rs6569648-T	0.7582	2E-10		0.02674544	[0.019-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
1579	chr6	130349118	130349119	rs6569648	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	6q23.1	L3MBTL3	rs6569648-C	0.235	5E-6	(EA, men)	0.022	[0.013-0.031] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1579	chr6	130349118	130349119	rs6569648	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	6q23.1	L3MBTL3	rs6569648-C	0.235	3E-6	(EA)	0.017	[0.0099-0.0241] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1579	chr6	130349118	130349119	rs6569648	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	6q23.1	L3MBTL3	rs6569648-C	0.232	2E-6		0.017	[0.0099-0.0237] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1579	chr6	130349118	130349119	rs6569648	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6q23.1	L3MBTL3	rs6569648-T	0.766	7E-12	(EA)	0.029	[0.021-0.037] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1579	chr6	130349118	130349119	rs6569648	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6q23.1	L3MBTL3	rs6569648-T	0.766	1E-9	(EA, men)	0.0351	[0.024-0.046] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1579	chr6	130349118	130349119	rs6569648	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	6q23.1	L3MBTL3	rs6569648-T	0.76	1E-21		0.04	[NR] unit decrease	Affymetrix, Illumina [2834208] (imputed)	N
1579	chr6	130350293	130350294	rs6926186	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	6q23.1		rs6926186-A	NR	1E-20		0.0238	[0.019-0.029] unit increase	Affymetrix, Illumina [20529698] (imputed)	N
1579	chr6	130352025	130352025	rs11390217	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	6q23.1		rs11390217-TA	NR	6E-19		0.0206	[0.016-0.025] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
1579	chr6	130353611	130353612	rs9402211	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6q23.1	L3MBTL3	rs9402211-T	NR	5E-12		0.0212776	[0.015-0.027] unit decrease	Affymetrix [321169] (imputed)	N
1579	chr6	130353611	130353612	rs9402211	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	6q23.1		rs9402211-?	NR	2E-19				NR [~ 8900000] (imputed)	N
1579	chr6	130354854	130354855	rs9388766	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	6q23.1	L3MBTL3	rs9388766-?	NR	1E-10		0.0182	[0.013-0.023] unit decrease	Affymetrix [5701386] (imputed)	N
1579	chr6	130354854	130354855	rs9388766	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	6q23.1	NR	rs9388766-T	0.302712	2E-27		0.0244638	[0.02-0.029] unit decrease	NR [NR]	N
1579	chr6	130354854	130354855	rs9388766	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6q23.1	NR	rs9388766-?	NR	3E-17				Affymetrix [~ 8270000] (imputed)	N
1579	chr6	130354854	130354855	rs9388766	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	6q23.1	NR	rs9388766-C	0.69	1E-21		0.018	[0.014-0.022] unit increase	Affymetrix [2446094] (imputed)	N
1579	chr6	130354854	130354855	rs9388766	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	6q23.1	NR	rs9388766-C	0.69	5E-8				Affymetrix [2446094] (imputed)	N
1579	chr6	130354854	130354855	rs9388766	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	315,284 European ancestry male individuals	NA	6q23.1	NR	rs9388766-T	0.3132	4E-20		0.017	[0.013-0.021] unit decrease	NR [~ 27400000] (imputed)	N
1579	chr6	130354854	130354855	rs9388766	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	6q23.1	L3MBTL3	rs9388766-T	0.298	5E-10		6.234	[NR] z score increase	Affymetrix, Illumina [~ 11000000] (imputed)	N
1579	chr6	130354854	130354855	rs9388766	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6q23.1	L3MBTL3	rs9388766-T	0.2923	7E-13	(EA)	0.0277	[0.02-0.035] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1579	chr6	130354854	130354855	rs9388766	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6q23.1	L3MBTL3	rs9388766-T	0.2923	5E-9	(EA,men)	0.0325	[0.022-0.043] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1579	chr6	130354854	130354855	rs9388766	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6q23.1	L3MBTL3	rs9388766-T	0.2923	2E-6	(EA, women)	0.0236	[0.014-0.033] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1579	chr6	130354972	130354973	rs139719552	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	6q23.1	L3MBTL3	rs139719552-C	0.013648	2E-11		0.06780834	[0.048-0.088] unit increase	Affymetrix [93095623] (imputed)	N
1579	chr6	130354972	130354973	rs139719552	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	6q23.1	L3MBTL3	rs139719552-C	0.013651	2E-10		0.06398581	[0.044-0.084] unit increase	Affymetrix [93095623] (imputed)	N
1579	chr6	130354972	130354973	rs139719552	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	6q23.1	NR	rs139719552-C	0.013782	3E-10		0.05824	[0.04-0.076] SD unit increase	Affymetrix, Illumina [50036608] (imputed)	N
1579	chr6	130356607	130356608	rs9375694	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	6q23.1	L3MBTL3	rs9375694-G	0.302427	7E-16		0.0174509	[0.013-0.022] unit decrease	Affymetrix [NR] (imputed)	N
1579	chr6	130356607	130356608	rs9375694	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	6q23.1	L3MBTL3	rs9375694-A	0.7031	3E-15		0.0026	[0.0018-0.0034] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
1579	chr6	130357552	130357553	rs9388767	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	6q23.1		rs9388767-G	0.302647	3E-8		0.0219546	[0.014-0.03] unit decrease	NR [11722792] (imputed)	N
1579	chr6	130358427	130358428	rs6899976	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	6q23.1		rs6899976-?	NR	3E-41				NR [~ 8900000] (imputed)	N
1579	chr6	130358427	130358428	rs6899976	18391951	Gudbjartsson DF	2008-04-06	Nat Genet	Many sequence variants affecting diversity of adult human height.	Height	30,968 European ancestry individuals	8,541 European ancestry individuals	6q23.1	L3MBTL3, SAMD3	rs6899976-G	0.28	6E-6		3.8	[2.23-5.37] % s.d. increase	Affymetrix, Illumina [up to 304226]	N
1579	chr6	130358943	130358944	rs9375695	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	6q23.1		rs9375695-T	NR	3E-10		0.0159	[0.011-0.021] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
1579	chr6	130358943	130358944	rs9375695	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	6q23.1		rs9375695-T	NR	3E-12		0.0155	[0.011-0.02] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
1579	chr6	130358943	130358944	rs9375695	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6q23.1		rs9375695-?	NR	9E-33		0.0258385	[0.021-0.03] unit decrease	Affymetrix [20259828] (imputed)	N
1579	chr6	130364327	130364328	rs4897361	30289880	Qi G	2018-10-05	PLoS Genet	Heritability informed power optimization (HIPO) leads to enhanced detection of genetic associations across multiple traits.	Lipid traits (pleiotropy) (HIPO component 2)	188,577 European ancestry individuals	NA	6q23.1	NR	rs4897361-?	NR	4E-6				NR [1800000]	N
1579	chr6	130364481	130364482	rs4895864	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6q23.1	L3MBTL3	rs4895864-C	NR	1E-11		0.0210038	[0.015-0.027] unit increase	Affymetrix [323123] (imputed)	N
1579	chr6	130367724	130367725	rs7744830	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	6q23.1		rs7744830-G	NR	6E-18		0.021	[0.016-0.026] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
1579	chr6	130370403	130370404	rs775280962	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	6q23.1		rs775280962-?	NR	3E-8		0.00537885	[0.0035-0.0073] unit decrease	NR [NR]	N
1579	chr6	130370729	130370731	rs201927923	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Aspartate aminotransferase levels	386,570 British ancestry individuals, 10,617 Asian or Asian British individuals, 7,426 Black or Black British individuals, 2,321 Chinese ancestry individuals	NA	6q23.1	L3MBTL3	rs201927923-?	NR	5E-15		0.0021	[0.0015-0.0027] unit decrease	Affymetrix [21347608] (imputed)	N
1579	chr6	130370729	130370731	rs201927923	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Alanine aminotransferase levels	387,859 British ancestry individuals, 10,635 Asian or Asian British individuals, 7,468 Black or Black British individuals, 2,338 Chinese ancestry individuals	NA	6q23.1	L3MBTL3	rs201927923-?	NR	6E-22		0.0043	[0.0033-0.0053] unit decrease	Affymetrix [21347608] (imputed)	N
1579	chr6	130370732	130370734	rs10550037	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	6q23.1		rs10550037-T	NR	7E-17		0.0154	[0.012-0.019] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
1579	chr6	130371226	130371227	rs9385532	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	up to 92,771 European ancestry males, up to 113,387 European ancestry females	NA	6q23.1	L3MBTL3	rs9385532-T	0.33	2E-11		0.026	[0.018-0.034] unit decrease	Affymetrix, Illumina, Perlegen [2437193] (imputed)	N
1579	chr6	130371839	130371840	rs7746589	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	148,164 European ancestry individuals	NA	6q23.1	L3MBTL3	rs7746589-A	0.67	1E-8	(BMI-adjusted)	0.024	[0.016-0.032] unit increase	Affymetrix, Illumina, Perlegen [10019203] (imputed)	N
1579	chr6	130372983	130372984	rs6914670	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6q23.1	L3MBTL3	rs6914670-A	NR	1E-8		0.0190807	[0.013-0.026] unit decrease	Affymetrix [323858] (imputed)	N
1579	chr6	130373647	130373648	rs7756870	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	6q23.1	NR	rs7756870-G	0.6886	3E-18		0.002046	[0.0016-0.0025] unit decrease	Affymetrix [NR] (imputed)	N
1579	chr6	130374101	130374102	rs9388768	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6q23.1	L3MBTL3	rs9388768-C		8E-16		0.019	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
1579	chr6	130374460	130374461	rs7740107	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	6q23.1		rs7740107-A	NR	2E-13		0.0195	[0.014-0.025] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
1579	chr6	130374460	130374461	rs7740107	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	6q23.1		rs7740107-A	NR	2E-16		0.0173	[0.013-0.021] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
1579	chr6	130374460	130374461	rs7740107	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6q23.1	L3MBTL3	rs7740107-T	NR	7E-14		0.0238191	[0.018-0.03] unit increase	Affymetrix [321016] (imputed)	N
1579	chr6	130374460	130374461	rs7740107	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	6q23.1	L3MBTL3	rs7740107-T	0.263941	1E-11		0.00166669	[0.0012-0.0022] unit decrease	Affymetrix [13995440] (imputed)	N
1579	chr6	130374460	130374461	rs7740107	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	6q23.1	L3MBTL3	rs7740107-A	0.7362	7E-99		0.0451	[0.041-0.049] unit decrease	Affymetrix [18391927] (imputed)	N
1579	chr6	130374460	130374461	rs7740107	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	6q23.1	L3MBTL3	rs7740107-A	0.736	1E-14		0.019409837	[0.014-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1579	chr6	130374460	130374461	rs7740107	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q23.1	NR	rs7740107-A	0.787031	8E-24				Affymetrix, Illumina [24332387] (imputed)	N
1579	chr6	130374460	130374461	rs7740107	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	6q23.1	NR	rs7740107-A	0.73677	2E-25		0.021726	[0.018-0.026] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
1579	chr6	130374460	130374461	rs7740107	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	6q23.1	NR	rs7740107-A	0.735811	1E-12		0.0523937	[0.037-0.067] unit decrease	Affymetrix [17914406] (imputed)	N
1579	chr6	130374460	130374461	rs7740107	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	6q23.1	L3MBTL3	rs7740107-A	0.7445	8E-17		0.0027	[0.0019-0.0035] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
1579	chr6	130374460	130374461	rs7740107	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Chronic kidney disease	64,164 European and unknown ancestry cases, 561,055 European and unknown ancestry controls	NA	6q23.1	L3MBTL3	rs7740107-T	0.26	1E-6		1.0490978	[1.03-1.07]	Affymetrix, Illumina [9585923] (imputed)	N
1579	chr6	130374460	130374461	rs7740107	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	6q23.1		rs7740107-?	NR	8E-12				NR [~ 8900000] (imputed)	N
1579	chr6	130374460	130374461	rs7740107	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6q23.1		rs7740107-?	NR	8E-157				NR [~ 8900000] (imputed)	N
1579	chr6	130374460	130374461	rs7740107	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	6q23.1	NA	rs7740107-A	0.7423	3E-9		0.0115	[0.0078-0.0152] unit decrease	NR [~ 27400000] (imputed)	N
1579	chr6	130374460	130374461	rs7740107	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	6q23.1	L3MBTL3	rs7740107-A	0.7342	2E-9		0.02413339	[0.016-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
1579	chr6	130374460	130374461	rs7740107	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	6q23.1	L3MBTL3	rs7740107-A	0.737	3E-36		0.042	[0.036-0.048] unit decrease	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
1579	chr6	130374710	130374711	rs4351283	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	6q23.1	L3MBTL3	rs4351283-T	0.326983	2E-19		0.00479192	[0.0037-0.0059] unit decrease	Affymetrix [13995440] (imputed)	N
1579	chr6	130374710	130374711	rs4351283	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	6q23.1	L3MBTL3	rs4351283-T	0.327009	5E-14		0.00306965	[0.0023-0.0039] unit decrease	Affymetrix [13995440] (imputed)	N
1579	chr6	130375809	130375810	rs6900473	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	6q23.1	NR	rs6900473-A	0.311931	5E-16		0.00980823	[0.0074-0.0123] unit increase	Affymetrix [16582621] (imputed)	N
1579	chr6	130375809	130375810	rs6900473	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	6q23.1	NR	rs6900473-A	0.311931	7E-12		0.00890429	[0.0063-0.0115] unit increase	Affymetrix [16582614] (imputed)	N
1579	chr6	130377842	130377843	rs11759018	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	6q23.1	L3MBTL3	rs11759018-C	0.313473	5E-15		0.0167935	[0.013-0.021] unit decrease	NR [13737936] (imputed)	N
1579	chr6	130378832	130378833	rs12661188	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	6q23.1	L3MBTL3	rs12661188-C	0.684135	1E-20		0.021777328	[0.017-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1579	chr6	130378832	130378833	rs12661188	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	6q23.1	L3MBTL3	rs12661188-C	0.684157	3E-24		0.023983683	[0.019-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1579	chr6	130378832	130378833	rs12661188	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	6q23.1	L3MBTL3	rs12661188-C	0.684144	7E-27		0.02540163	[0.021-0.03] unit increase	Affymetrix [93095623] (imputed)	N
1579	chr6	130378832	130378833	rs12661188	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q23.1	NR	rs12661188-C	0.701442	7E-29				Affymetrix, Illumina [24653286] (imputed)	N
1579	chr6	130378832	130378833	rs12661188	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	6q23.1	NR	rs12661188-C	0.685131	3E-29		0.022205	[0.018-0.026] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
1579	chr6	130378832	130378833	rs12661188	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q23.1	NR	rs12661188-C	0.699996	3E-32				Affymetrix, Illumina [24558453] (imputed)	N
1579	chr6	130378832	130378833	rs12661188	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	6q23.1	NR	rs12661188-C	0.685133	5E-33		0.023732	[0.02-0.028] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
1579	chr6	130378832	130378833	rs12661188	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	6q23.1		rs12661188-?	NR	2E-18				NR [~ 8900000] (imputed)	N
1579	chr6	130378832	130378833	rs12661188	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	6q23.1	L3MBTL3	rs12661188-T	0.3089	2E-7		0.0507	[0.032-0.07] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1579	chr6	130378832	130378833	rs12661188	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6q23.1	L3MBTL3	rs12661188-T	0.3111	1E-13		0.0546	[0.04-0.069] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1579	chr6	130379159	130379160	rs12661232	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	6q23.1	NR	rs12661232-T	0.312206	8E-34		0.0108082	[0.009-0.0126] unit increase	Affymetrix [16582909] (imputed)	N
1579	chr6	130379159	130379160	rs12661232	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	6q23.1	NR	rs12661232-T	0.312206	5E-21		0.00932064	[0.0073-0.0113] unit increase	Affymetrix [16582965] (imputed)	N
1579	chr6	130379281	130379282	rs12201492	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6q23.1	L3MBTL3	rs12201492-A	NR	2E-8		0.0168911	[0.011-0.023] unit decrease	Affymetrix [319769] (imputed)	N
1579	chr6	130379853	130379854	rs9375700	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q23.1	NR	rs9375700-C	0.680105	5E-15				Affymetrix, Illumina [24649327] (imputed)	N
1579	chr6	130379853	130379854	rs9375700	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	6q23.1	NR	rs9375700-C	0.689008	1E-15		0.015882	[0.012-0.02] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
1579	chr6	130381245	130381246	rs7451021	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	6q23.1	NR	rs7451021-T	0.3183	2E-18		0.0168	[0.013-0.021] unit decrease	NR [~ 27400000] (imputed)	N
1579	chr6	130384186	130384187	rs9375702	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6q23.1	L3MBTL3	rs9375702-C	NR	4E-15		0.0260262	[0.02-0.033] unit increase	Affymetrix [323123] (imputed)	N
1579	chr6	130384186	130384187	rs9375702	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	6q23.1		rs9375702-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1579	chr6	130384186	130384187	rs9375702	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	6q23.1	L3MBTL3	rs9375702-T	0.6966	2E-6		0.0353	[0.021-0.05] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1579	chr6	130384709	130384710	rs72989401	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6q23.1	L3MBTL3	rs72989401-A	0.575953	5E-10		0.014033059	[0.0096-0.0184] unit increase	Affymetrix [93095623] (imputed)	N
1579	chr6	130384709	130384710	rs72989401	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	6q23.1	L3MBTL3	rs72989401-A	0.575958	2E-9		0.013417463	[0.009-0.0178] unit increase	Affymetrix [93095623] (imputed)	N
1579	chr6	130384709	130384710	rs72989401	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6q23.1	L3MBTL3	rs72989401-A	0.575946	7E-14		0.016760727	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1579	chr6	130389210	130389211	rs12197047	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6q23.1	L3MBTL3	rs12197047-G	NR	8E-9		0.0173001	[0.011-0.023] unit increase	Affymetrix [321016] (imputed)	N
1579	chr6	130389210	130389211	rs12197047	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	6q23.1	L3MBTL3	rs12197047-G	0.329942	1E-9		0.0135895	[0.0092-0.018] unit decrease	Affymetrix [NR] (imputed)	N
1579	chr6	130389210	130389211	rs12197047	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	6q23.1	L3MBTL3	rs12197047-G	0.329968	4E-11		0.0146592	[0.01-0.019] unit decrease	Affymetrix [NR] (imputed)	N
1579	chr6	130389210	130389211	rs12197047	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	6q23.1	L3MBTL3	rs12197047-?	NR	2E-9		0.0164	[0.012-0.021] unit decrease	Affymetrix [5701386] (imputed)	N
1579	chr6	130389939	130389940	rs4364506	27386562	Andlauer TF	2016-06-17	Sci Adv	Novel multiple sclerosis susceptibility loci implicated in epigenetic regulation.	Multiple sclerosis	4,888 German ancestry cases, 10,395 German ancestry controls	2,903 Sardinian ancestry cases, 3,323 Sardinian ancestry controls	6q23.1	L3MBTL3	rs4364506-?	NR	2E-6		1.1235955	[1.08-1.18]	Illumina [at least 8143088] (imputed)	N
1579	chr6	130390656	130390657	rs10499172	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6q23.1	L3MBTL3	rs10499172-C	NR	2E-8		0.0196337	[0.013-0.027] unit decrease	Affymetrix [323858] (imputed)	N
1579	chr6	130394665	130394666	rs4897364	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	6q23.1		rs4897364-G	NR	7E-9		0.0125	[0.0082-0.0168] unit increase	Affymetrix, Illumina [20521447] (imputed)	N
1579	chr6	130396650	130396651	rs9492442	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large VLDL	115,082 European ancestry individuals	NA	6q23.1		rs9492442-G	0.679935	5E-10		0.0262339	[0.018-0.034] unit increase	NR [11722792] (imputed)	N
1579	chr6	130396650	130396651	rs9492442	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large VLDL	115,082 European ancestry individuals	NA	6q23.1		rs9492442-G	0.679935	4E-9		0.0249407	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
1579	chr6	130396650	130396651	rs9492442	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6q23.1		rs9492442-G	0.679935	9E-11		0.0275607	[0.019-0.036] unit increase	NR [11722792] (imputed)	N
1579	chr6	130396650	130396651	rs9492442	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in VLDL	115,082 European ancestry individuals	NA	6q23.1		rs9492442-G	0.679935	2E-9		0.0253372	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
1579	chr6	130396650	130396651	rs9492442	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total triglycerides levels	115,082 European ancestry individuals	NA	6q23.1		rs9492442-G	0.679935	2E-8		0.0240777	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
1579	chr6	130396650	130396651	rs9492442	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large VLDL	115,082 European ancestry individuals	NA	6q23.1		rs9492442-G	0.679935	3E-10		0.0267144	[0.018-0.035] unit increase	NR [11722792] (imputed)	N
1579	chr6	130396650	130396651	rs9492442	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large VLDL	115,082 European ancestry individuals	NA	6q23.1		rs9492442-G	0.679935	4E-9		0.0251141	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
1579	chr6	130396650	130396651	rs9492442	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6q23.1		rs9492442-G	0.679935	6E-11		0.0277675	[0.019-0.036] unit increase	NR [11722792] (imputed)	N
1579	chr6	130396650	130396651	rs9492442	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in VLDL	115,082 European ancestry individuals	NA	6q23.1		rs9492442-G	0.679935	1E-8		0.0245962	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
1579	chr6	130396650	130396651	rs9492442	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large VLDL	115,082 European ancestry individuals	NA	6q23.1		rs9492442-G	0.679935	5E-10		0.0264844	[0.018-0.035] unit increase	NR [11722792] (imputed)	N
1579	chr6	130396650	130396651	rs9492442	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large VLDL	115,082 European ancestry individuals	NA	6q23.1		rs9492442-G	0.679935	4E-9		0.0251032	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
1579	chr6	130396650	130396651	rs9492442	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6q23.1		rs9492442-G	0.679935	8E-10		0.0259511	[0.018-0.034] unit increase	NR [11722792] (imputed)	N
1579	chr6	130396650	130396651	rs9492442	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	6q23.1		rs9492442-G	0.679935	8E-10		0.0262398	[0.018-0.035] unit increase	NR [11722792] (imputed)	N
1579	chr6	130396650	130396651	rs9492442	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	6q23.1		rs9492442-G	0.679935	3E-9		0.025268	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
1579	chr6	130396650	130396651	rs9492442	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6q23.1		rs9492442-G	0.679935	9E-10		0.0259777	[0.018-0.034] unit increase	NR [11722792] (imputed)	N
1579	chr6	130396650	130396651	rs9492442	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large VLDL particles	115,082 European ancestry individuals	NA	6q23.1		rs9492442-G	0.679935	5E-10		0.0263696	[0.018-0.035] unit increase	NR [11722792] (imputed)	N
1579	chr6	130396650	130396651	rs9492442	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large VLDL particles	115,082 European ancestry individuals	NA	6q23.1		rs9492442-G	0.679935	4E-9		0.0250684	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
1579	chr6	130396650	130396651	rs9492442	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of chylomicrons and extremely large VLDL particles	115,082 European ancestry individuals	NA	6q23.1		rs9492442-G	0.679935	6E-10		0.0262414	[0.018-0.035] unit increase	NR [11722792] (imputed)	N
1579	chr6	130396650	130396651	rs9492442	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	6q23.1		rs9492442-G	0.679935	3E-8		0.0235411	[0.015-0.032] unit decrease	NR [11722792] (imputed)	N
1579	chr6	130396650	130396651	rs9492442	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6q23.1		rs9492442-G	0.679935	2E-9		0.0255507	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
1579	chr6	130396650	130396651	rs9492442	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	6q23.1		rs9492442-G	0.679935	6E-9		0.0250773	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
1579	chr6	130396650	130396651	rs9492442	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	6q23.1		rs9492442-G	0.679935	3E-8		0.0237731	[0.015-0.032] unit increase	NR [11722792] (imputed)	N
1579	chr6	130396650	130396651	rs9492442	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6q23.1		rs9492442-G	0.679935	1E-9		0.0258118	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
1579	chr6	130398029	130398030	rs4321846	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	6q23.1		rs4321846-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1579	chr6	130402567	130402567	rs113385622	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	6q23.1		rs113385622-A,rs113385622-A	0.733512	3E-8		0.0229588	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
1579	chr6	130402567	130402567	rs113385622	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	6q23.1		rs113385622-A,rs113385622-A	0.733512	3E-8		0.0229588	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
1579	chr6	130404080	130404081	rs6569651	31028280	Ierodiakonou D	2019-04-26	J Expo Sci Environ Epidemiol	Pathway analysis of a genome-wide gene by air pollution interaction study in asthmatic children.	Post-bronchodilator FEV1 x air pollution (CO) interaction in childhood asthma	522 European ancestry children	NA	6q23.1		rs6569651-C	NR	9E-6		0.88	unit increase	Illumina [474792]	N
1579	chr6	130410984	130410984	rs35333288	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	6q23.1		rs35333288-C	0.279411	2E-10		0.0273958	[0.019-0.036] unit decrease	NR [11722792] (imputed)	N
1579	chr6	130410984	130410984	rs35333288	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	6q23.1		rs35333288-C	0.279391	4E-8		0.0246037	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
1579	chr6	130410984	130410984	rs35333288	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for VLDL particles	115,082 European ancestry individuals	NA	6q23.1		rs35333288-C	0.279427	2E-10		0.0278688	[0.019-0.036] unit decrease	NR [11722792] (imputed)	N
1579	chr6	130414234	130414235	rs7756339	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	6q23.1		rs7756339-A	0.687268	2E-8		0.0237962	[0.015-0.032] unit increase	NR [11722792] (imputed)	N
1579	chr6	130414234	130414235	rs7756339	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	6q23.1		rs7756339-A	0.687268	4E-9		0.024911	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
1580	chr6	130417832	130417833	rs13211683	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	6q23.1		rs13211683-G	0.703393	1E-8		0.0245364	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
1580	chr6	130417832	130417833	rs13211683	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6q23.1	L3MBTL3	rs13211683-C	NR	1E-9		0.0208433	[0.014-0.028] unit decrease	Affymetrix [127266] (imputed)	N
1580	chr6	130419554	130419555	rs7755589	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6q23.1	L3MBTL3	rs7755589-A	NR	3E-10		0.0215794	[0.015-0.028] unit decrease	Affymetrix [323858] (imputed)	N
1580	chr6	130422141	130422142	rs12206651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	6q23.1		rs12206651-A	0.765846	9E-9		0.0266093	[0.018-0.036] unit increase	NR [11722792] (imputed)	N
1580	chr6	130422141	130422142	rs12206651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	6q23.1		rs12206651-A	0.765846	1E-8		0.0245719	[0.016-0.033] unit decrease	NR [11722792] (imputed)	N
1580	chr6	130422141	130422142	rs12206651	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Spleen volume	32,860 European ancestry individuals	NA	6q23.1	L3MBTL3	rs12206651-?	NR	2E-9		0.0494	NR L increase	Affymetrix [9390170] (imputed)	N
1580	chr6	130422141	130422142	rs12206651	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6q23.1	L3MBTL3	rs12206651-G	NR	9E-12		0.022663	[0.016-0.029] unit increase	Affymetrix [321016] (imputed)	N
1580	chr6	130422141	130422142	rs12206651	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6q23.1	L3MBTL3	rs12206651-G	NR	7E-12		0.0247952	[0.018-0.032] unit increase	Affymetrix [323123] (imputed)	N
1580	chr6	130428178	130428179	rs72991294	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6q23.1	L3MBTL3	rs72991294-C	NR	1E-12		0.0260331	[0.019-0.033] unit decrease	Affymetrix [323123] (imputed)	N
1580	chr6	130434141	130434142	rs11154521	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6q23.1	L3MBTL3	rs11154521-C	NR	1E-8		0.0169046	[0.011-0.023] unit increase	Affymetrix [321016] (imputed)	N
1580	chr6	130436471	130436472	rs6914419	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6q23.1	L3MBTL3	rs6914419-T	NR	3E-9		0.0187465	[0.013-0.025] unit increase	Affymetrix [323123] (imputed)	N
1580	chr6	130448852	130448853	rs17633311	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6q23.1		rs17633311-?	NR	2E-13				NR [~ 8900000] (imputed)	N
1580	chr6	130453881	130453882	rs12528886	26379185	Garcia-Etxebarria K	2015-09-17	PLoS One	No Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity.	Mild influenza (H1N1) infection	107 European ancestry mild cases, 549 European ancestry population controls	NA	6q23.1	L3MBTL3	rs12528886-?	0.006579	3E-12		13.21	[12.29-14.13]	Affymetrix [547296]	N
1580	chr6	130453881	130453882	rs12528886	26379185	Garcia-Etxebarria K	2015-09-17	PLoS One	No Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity.	Influenza A (H1N1) infection	49 European ancestry severe cases, 107 European ancestry mild cases, 549 European ancestry population controls	NA	6q23.1	L3MBTL3	rs12528886-?	0.006579	3E-8		8.736	[3.488-21.88]	Affymetrix [547296]	N
1580	chr6	130456813	130456814	rs117858510	34387878	Kim KY	2021-08-13	Hepatology	Genome-wide association of individual vulnerability with alcoholic liver disease: A Korean Genome and Epidemiology Study.	Alcohol-associated liver disease in non drinkers	782 Korean ancestry cases, 18,058 Korean ancestry controls	NA	6q23.1		rs117858510-?	NR	6E-6		2.033	[1.495-2.765]	Affymetrix [7975321] (imputed)	N
1580	chr6	130456937	130456938	rs6933511	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6q23.1	L3MBTL3, RP11-73O6.3	rs6933511-A	NR	7E-9		0.0171641	[0.011-0.023] unit decrease	Affymetrix [321169] (imputed)	N
1580	chr6	130487546	130487547	rs114415146	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,963 Sub-Saharan African ancestry females, 3,931 Sub-Saharan African ancestry males	NA	6q23.1		rs114415146-A	0.974457	5E-6		0.0241729	[0.0077-0.0407] unit increase	Illumina [7666802] (imputed)	N
1580	chr6	130515493	130515494	rs61201007	26420894	Wuttke M	2015-09-28	Nephrol Dial Transplant	Genetic loci associated with renal function measures and chronic kidney disease in children: the Pediatric Investigation for Genetic Factors Linked with Renal Progression Consortium.	Proteinuria in chronic kidney disease	up to 744 European ancestry child cases, up to 397 Turkish ancestry child cases	NA	6q23.1	SAMD3	rs61201007-T	0.37	9E-6		1.54	[1.27-1.87]	Illumina [~ 8300000] (imputed)	N
1580	chr6	130528187	130528188	rs7772936	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6q23.1	NR	rs7772936-A	0.198	3E-6	(IFNalpha_STAT4_of_CD8p_T)			Illumina [5084123] (imputed)	N
1581	chr6	130550062	130550063	rs10447419	23534349	Jeff JM	2013-03-28	Ann Hum Genet	Generalization of variants identified by genome-wide association studies for electrocardiographic traits in African Americans.	PR interval	455 African American individuals	NA	6q23.1	intergenic	rs10447419-A		2E-6		8.65	[NR] ms decrease	Illumina [> 930000]	N
1581	chr6	130560649	130560650	rs181078317	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6q23.1	NR	rs181078317-A	0.01045	1E-9	(MARC2)	0.1764	NR unit increase	Illumina [1671387] (imputed)	N
1581	chr6	130581979	130581980	rs62431222	32349335	Lundback V	2020-04-27	Cells	Genome-Wide Association Study of Diabetogenic Adipose Morphology in the GENetics of Adipocyte Lipolysis (GENiAL) Cohort.	Adipose morphology	894 individuals	NA	6q23.1	NR	rs62431222-A	0.0329	1E-6		102.0	[61-144] unit increase	NR [9714326] (imputed)	N
1581	chr6	130582514	130582515	rs55650481	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	6q23.1		rs55650481-?	NR	4E-8		0.0259	unit decrease	NR [NR]	N
1581	chr6	130598622	130598623	rs12202107	34380480	Liu J	2021-08-12	BMC Med	Genome-wide association study followed by trans-ancestry meta-analysis identify 17 new risk loci for schizophrenia.	Schizophrenia	26,271 East Asian ancestry cases, 40,071 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	6q23.1		rs12202107-T	NR	3E-8		1.05		Illumina [NR] (imputed)	N
1581	chr6	130610792	130610793	rs12215021	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure in major depressive disorder-negative individuals	10,701 European ancestry cases, 39,677 European ancestry controls	NA	6q23.1	NR	rs12215021-T	0.75568	7E-6		1.1299435	[1.07-1.19]	Affymetrix [7791636] (imputed)	N
1581	chr6	130622608	130622609	rs11962398	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	6q23.1	SAMD3	rs11962398-T	NR	4E-6		0.0539447	[0.031-0.077] unit increase	Illumina [13520550] (imputed)	N
1581	chr6	130622739	130622740	rs6937866	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	6q23.1	NR	rs6937866-?	NR	7E-8		0.009434	[0.006-0.0129] unit decrease	Affymetrix [805426] (imputed)	N
1582	chr6	130713118	130713119	rs141704717	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6q23.1		rs141704717-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1582	chr6	130753587	130753588	rs11154580	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	6q23.1	NR	rs11154580-?	NR	5E-7		0.0089948	[0.0055-0.0125] unit decrease	Affymetrix [805426] (imputed)	N
1582	chr6	130765739	130765740	rs12197554	26242244	Ma Y	2015-08-05	Sci Rep	Association of chromosome 5q21.3 polymorphisms with the exploratory eye movement dysfunction in schizophrenia.	Exploratory eye movement dysfunction in schizophrenia (responsive search score)	128 Han Chinese ancestry cases	NA	6q23.1	TMEM200A	rs12197554-?	NR	8E-6		4.929	[2.86-7] unit decrease	Illumina [498648]	N
1582	chr6	130765739	130765740	rs12197554	26242244	Ma Y	2015-08-05	Sci Rep	Association of chromosome 5q21.3 polymorphisms with the exploratory eye movement dysfunction in schizophrenia.	Exploratory eye movement dysfunction in schizophrenia (number of eye fixations)	128 Han Chinese ancestry cases	NA	6q23.1	TMEM200A	rs12197554-?	NR	7E-6		13.78	[8.03-19.53] unit decrease	Illumina [498648]	N
1582	chr6	130765739	130765740	rs12197554	26242244	Ma Y	2015-08-05	Sci Rep	Association of chromosome 5q21.3 polymorphisms with the exploratory eye movement dysfunction in schizophrenia.	Exploratory eye movement dysfunction in schizophrenia (cognitive search score)	128 Han Chinese ancestry cases	NA	6q23.1	TMEM200A	rs12197554-?	NR	6E-6		3.112	[1.83-4.4] unit decrease	Illumina [498648]	N
1582	chr6	130767103	130767104	rs4555944	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure	35,269 European ancestry cases, 63,451 European ancestry controls	NA	6q23.1	NR	rs4555944-T	0.705985	6E-6		1.066098	[1.04-1.09]	Affymetrix [7791636] (imputed)	N
1582	chr6	130769857	130769858	rs17059066	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	6q23.1	Intergenic	rs17059066-T	NR	7E-6		0.0474605	[0.027-0.068] unit increase	Illumina [13520550] (imputed)	N
1583	chr6	130846404	130846405	rs146939578	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	6q23.1	Intergenic	rs146939578-A	0.991	4E-6	(AA)	0.41	NR unit increase	Illumina [NR] (imputed)	N
1583	chr6	130846741	130846742	rs143997509	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	6q23.1	Intergenic	rs143997509-C	0.991	4E-6	(AA)	0.411	NR unit increase	Illumina [NR] (imputed)	N
1583	chr6	130852622	130852623	rs7768204	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota alpha diversity (Shannon index)	1,068 Japanese ancestry individuals	NA	6q23.1	intergenic	rs7768204-G	0.09	5E-6		0.231	[0.13-0.33] unit decrease	Illumina [6380737] (imputed)	N
1583	chr6	130852622	130852623	rs7768204	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota alpha diversity (Shannon index)	1,068 Japanese ancestry individuals	NA	6q23.1	intergenic	rs7768204-G	0.09	2E-6	(female)	0.324	[0.19-0.46] unit decrease	Illumina [6380737] (imputed)	N
1583	chr6	130855470	130855471	rs145481885	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	6q23.1	Intergenic	rs145481885-G	0.991	3E-6	(AA)	0.081	unit increase	Illumina [NR] (imputed)	N
1583	chr6	130880523	130880524	rs189211803	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	6q23.1	Intergenic	rs189211803-C	0.995	3E-6	(AA)	0.557	NR unit increase	Illumina [NR] (imputed)	N
1583	chr6	130886436	130886437	rs9492645	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6q23.1	NR	rs9492645-G	0.947434826924789	7E-6	(IGP48)	0.3293	[0.19-0.47] unit decrease	Illumina [~ 2500000] (imputed)	N
1583	chr6	130886436	130886437	rs9492645	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6q23.1	NR	rs9492645-G	0.947434826924789	5E-6	(IGP8)	0.3363	[0.19-0.48] unit decrease	Illumina [~ 2500000] (imputed)	N
1583	chr6	130925766	130925767	rs1933755	25192705	Du M	2014-09-05	Cancer Epidemiol Biomarkers Prev	No evidence of gene-calcium interactions from genome-wide analysis of colorectal cancer risk.	Colorectal cancer (calcium intake interaction)	9,006 European ancestry cases, 9,503 European ancestry controls	NA	6q23.1	EPB41L2, TMEM200A	rs1933755-T	0.9	2E-6	(Total calcium intake)	1.19	[1.11-1.28]	NR [~ 2700000] (imputed)	N
1584	chr6	130959518	130959519	rs34812746	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs non-severe)	86 Finnish ancestry male severe erosion cases, 50 Finnish ancestry female severe erosion cases, 817 Finnish ancestry male non-severe erosion controls, 991 Finnish ancestry female non-severe erosion controls	NA	6q23.1	NR	rs34812746-?	NR	2E-6				Illumina [NR] (imputed)	N
1584	chr6	130964436	130964437	rs9372971	28762467	Wadelius M	2017-08-01	Clin Pharmacol Ther	Sulfasalazine-Induced Agranulocytosis Is Associated With the Human Leukocyte Antigen Locus.	Sulfasalazine-induced agranulocytosis	36 European ancestry cases, 5,170 European ancestry untreated controls	NA	6q23.1	intergenic	rs9372971-?	NR	2E-7		7.02	[3.37-14.64]	Illumina [9380034] (imputed)	N
1584	chr6	131034315	131034315	rs35507944	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	6q23.1		rs35507944-CAT	0.153805	4E-13		0.022322578	[0.016-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
1584	chr6	131044798	131044799	rs2221651	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	6q23.1	intergenic	rs2221651-A	0.1592	1E-9		0.02936976	[0.02-0.039] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1584	chr6	131054574	131054575	rs71572935	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	6q23.1		rs71572935-C	0.153084	1E-10		0.019863667	[0.014-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1585	chr6	131090081	131090082	rs13200945	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6q23.1		rs13200945-?	NR	1E-13				NR [~ 8900000] (imputed)	N
1585	chr6	131090396	131090397	rs7756021	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	6q23.1	NR	rs7756021-C	0.152309	2E-15		0.020704	[0.016-0.026] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1585	chr6	131099950	131099951	rs6937306	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q23.1	NR	rs6937306-G	0.152086	6E-13				Affymetrix, Illumina [23467995] (imputed)	N
1585	chr6	131114385	131114386	rs761841	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	6q23.1		rs761841-C	0.575927	8E-10		0.013986714	[0.0095-0.0184] unit increase	Affymetrix [93095623] (imputed)	N
1585	chr6	131122294	131122295	rs9385561	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6q23.1	SMLR1	rs9385561-C	NR	1E-8		0.0169044	[0.011-0.023] unit decrease	Affymetrix [321016] (imputed)	N
1585	chr6	131128369	131128370	rs7761842	31605138	Avitabile M	2019-09-07	Carcinogenesis	Neural crest-derived tumor neuroblastoma and melanoma share 1p13.2 as susceptibility locus that shows a long-range interaction with the SLC16A1 gene.	Neuroblastoma or malignant cutaneous melanoma	2,101 European ancestry neuroblastoma cases, 12,874 European ancestry malignant cutaneous melanoma cases, 27,405 European ancestry controls	2,039 European ancestry neuroblastoma cases, 508 European ancestry malignant cutaneous melanoma cases, 3,469 European ancestry controls	6q23.1	RP11-102N11.1, SMLR1	rs7761842-G	0.70906	9E-6		1.0772376	[1.05-1.12]	NR [NR] (imputed)	N
1585	chr6	131138645	131138645	rs536124151	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6q23.1		rs536124151-?	NR	4E-13		0.0207392	[0.015-0.026] unit decrease	Affymetrix [20259828] (imputed)	N
1585	chr6	131142989	131142990	rs141573810	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	6q23.1	intergenic	rs141573810-G	0.5282	3E-9		0.02205216	[0.015-0.029] unit increase	Affymetrix [~ 2500000] (imputed)	N
1585	chr6	131142989	131142990	rs141573810	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	6q23.1	intergenic	rs141573810-G	0.528	3E-9		0.02199262	[0.015-0.029] unit increase	Affymetrix [~ 2500000] (imputed)	N
1585	chr6	131143141	131143142	rs6941639	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Neuroticism	170,911 European ancestry individuals	NA	6q23.1	NR	rs6941639-A	0.377	8E-7		0.017953254	[0.011-0.025] unit increase	Affymetrix [up to 6544775] (imputed)	N
1585	chr6	131159775	131159776	rs6936553	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on self-rated math ability (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	6q23.1		rs6936553-?	NR	6E-9				NR [NR]	N
1585	chr6	131159775	131159776	rs6936553	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on highest math class (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	6q23.1		rs6936553-?	NR	4E-9				NR [NR]	N
1585	chr6	131159775	131159776	rs6936553	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on educational attainment (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	6q23.1		rs6936553-?	NR	1E-8				NR [NR]	N
1585	chr6	131159775	131159776	rs6936553	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on cognitive performance (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	6q23.1		rs6936553-?	NR	4E-9				NR [NR]	N
1585	chr6	131159775	131159776	rs6936553	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on average household income before tax (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	6q23.1		rs6936553-?	NR	7E-9				NR [NR]	N
1585	chr6	131159775	131159776	rs6936553	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on Townsend deprivation index (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	6q23.1		rs6936553-?	NR	2E-9				NR [NR]	N
1585	chr6	131166003	131166004	rs2005012	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Pars triangularis volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	6q23.1	EPB41L2	rs2005012-?		2E-6				Illumina [4322238] (imputed)	N
1585	chr6	131168048	131168049	rs872576	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6q23.1	EPB41L2	rs872576-T	NR	3E-12		0.0207405	[0.015-0.027] unit decrease	Affymetrix [321016] (imputed)	N
1585	chr6	131168048	131168049	rs872576	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	6q23.1		rs872576-?	NR	1E-7				NR [~ 8900000] (imputed)	N
1585	chr6	131176294	131176294	rs775592840	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6q23.1	EPB41L2	rs775592840-G	NR	1E-8		0.0161875	[0.011-0.022] unit decrease	Affymetrix [321016] (imputed)	N
1585	chr6	131186392	131186393	rs7770860	31518406	Abdellaoui A	2019-09-13	Hum Mol Genet	Phenome-wide investigation of health outcomes associated with genetic predisposition to loneliness.	Loneliness	511,280 European ancestry individuals	NA	6q23.1	EPB41L2	rs7770860-?	NR	9E-9		0.02	[0.014-0.026] unit decrease	Affymetrix, Illumina [up to 14113458] (imputed)	N
1585	chr6	131186392	131186393	rs7770860	29970889	Day FR	2018-07-03	Nat Commun	Elucidating the genetic basis of social interaction and isolation.	Loneliness (MTAG)	487,647 European ancestry individuals	NA	6q23.1	LOC100507203, EPB41L2, AKAP7	rs7770860-T	0.626684	1E-9		0.012899768	[0.0087-0.0171] unit decrease	NR [NR] (imputed)	N
1585	chr6	131186392	131186393	rs7770860	29970889	Day FR	2018-07-03	Nat Commun	Elucidating the genetic basis of social interaction and isolation.	Loneliness	80,134 European ancestry cases, 364,890 European ancestry controls	NA	6q23.1	LOC100507203, EPB41L2, AKAP7	rs7770860-T	0.627	1E-8		0.0047	[0.0031-0.0063] unit decrease	NR [NR] (imputed)	N
1585	chr6	131193945	131193946	rs1571911	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	6q23.1	EPB41L2	rs1571911-C	0.302797	3E-12		0.0152984	[0.011-0.02] unit decrease	NR [13737936] (imputed)	N
1585	chr6	131198985	131198985	rs149670043	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	6q23.1		rs149670043-ACTAC	NR	6E-10		0.0137	[0.0094-0.018] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
1586	chr6	131256363	131256364	rs7769153	22331829	Chasman DI	2012-02-13	Circ Cardiovasc Genet	Genetic determinants of statin-induced low-density lipoprotein cholesterol reduction: the Justification for the Use of Statins in Prevention: an Intervention Trial Evaluating Rosuvastatin (JUPITER) trial.	Response to statins (LDL cholesterol change)	6,989 European ancestry individuals	NA	6q23.2	EPB41L2	rs7769153-?	NR	2E-7	(fractional LDL-C reduction)	10.3	[6.77-13.83] % increase	Illumina [814418]	N
1586	chr6	131282209	131282210	rs6941712	22903471	Hibar DP	2012-08-18	Brain Imaging Behav	Genome-wide association identifies genetic variants associated with lentiform nucleus volume in N = 1345 young and elderly subjects.	Lentiform nucleus volume	162 European ancestry Alzheimer's disease cases, 346 European ancestry mild cognitive impairment cases, 198 European ancestry controls, 639 European ancestry individuals from 364 families	NA	6q23.2	EPB41L2	rs6941712-C	0.13	5E-6		149.67	[NR] unit decrease	Illumina [2380200] (imputed)	N
1586	chr6	131295635	131295636	rs9375787	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	6q23.2	NR	rs9375787-A	0.169812	9E-12		0.016571	[0.012-0.021] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1586	chr6	131302472	131302473	rs6926250	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	6q23.2	EPB41L2	rs6926250-C	0.413195	2E-12		0.015963852	[0.012-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1586	chr6	131302488	131302489	rs9492774	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6q23.2		rs9492774-C	0.3692	4E-8		0.008	[0.0051-0.0109] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1586	chr6	131307181	131307182	rs4895901	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	6q23.2	EPB41L2	rs4895901-T	0.62556	9E-50		0.0309682	[0.027-0.035] unit increase	NR [13737936] (imputed)	N
1586	chr6	131307181	131307182	rs4895901	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6q23.2		rs4895901-?	NR	7E-40		0.0275732	[0.023-0.032] unit increase	Affymetrix [20259828] (imputed)	N
1586	chr6	131309868	131309869	rs9483203	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	6q23.2	NR	rs9483203-C	NR	2E-9		0.0168	[0.011-0.022] unit increase	Affymetrix [9000000] (imputed)	N
1586	chr6	131311908	131311909	rs9885632	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	6q23.2		rs9885632-?	NR	6E-8				NR [~ 8900000] (imputed)	N
1586	chr6	131311908	131311909	rs9885632	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	6q23.2	EPB41L2	rs9885632-T	0.7345	5E-14		0.2102	[0.16-0.26] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1586	chr6	131316457	131316458	rs9321266	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6q23.2	EPB41L2	rs9321266-G	NR	1E-11		0.0195547	[0.014-0.025] unit increase	Affymetrix [321016] (imputed)	N
1586	chr6	131316457	131316458	rs9321266	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6q23.2		rs9321266-?	NR	1E-62				NR [~ 8900000] (imputed)	N
1586	chr6	131322117	131322117	rs111557256	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6q23.2	EPB41L2	rs111557256-GGAGA	NR	2E-9		0.0191552	[0.013-0.025] unit increase	Affymetrix [323123] (imputed)	N
1586	chr6	131323991	131323992	rs6928986	30975718	Tanikawa C	2019-04-11	J Am Soc Nephrol	Novel Risk Loci Identified in a Genome-Wide Association Study of Urolithiasis in a Japanese Population.	Urolithiasis	11,130 Japanese ancestry cases, 187,639 Japanese ancestry controls	2,289 Japanese ancestry cases, 3,817 Japanese ancestry controls	6q23.2	EPB41L2	rs6928986-T	0.595	4E-10		1.09	[NR]	Illumina [6603247] (imputed)	N
1586	chr6	131326318	131326319	rs5880046	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6q23.2		rs5880046-?	NR	2E-39		0.0274138	[0.023-0.032] unit increase	Affymetrix [20259828] (imputed)	N
1586	chr6	131326318	131326319	rs5880046	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	6q23.2	EPB41L2	rs5880046-GT	0.611751	3E-6	(men)	0.0223833	[0.012-0.033] unit increase	NR [17166351] (imputed)	N
1586	chr6	131326318	131326319	rs5880046	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	6q23.2	EPB41L2	rs5880046-GT	0.611312	8E-17		0.027655	[0.021-0.034] unit increase	NR [17166351] (imputed)	N
1586	chr6	131326318	131326319	rs5880046	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	6q23.2	EPB41L2	rs5880046-GT	0.610929	1E-10	(women)	0.0301183	[0.021-0.04] unit increase	NR [17166351] (imputed)	N
1586	chr6	131328079	131328080	rs6921542	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	6q23.2	EPB41L2	rs6921542-C	0.2288	8E-10		0.02573725	[0.018-0.034] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1586	chr6	131332165	131332166	rs6903066	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6q23.2	EPB41L2	rs6903066-T	NR	3E-8		0.0192024	[0.012-0.026] unit increase	Affymetrix [321016] (imputed)	N
1587	chr6	131349616	131349617	rs12203760	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	6q23.2		rs12203760-?	NR	2E-21				NR [~ 8900000] (imputed)	N
1587	chr6	131355863	131355864	rs6908917	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6q23.2	NR	rs6908917-C	0.751956642030276	2E-6	(IGP15)	0.1674	[0.098-0.236] unit increase	Illumina [~ 2500000] (imputed)	N
1587	chr6	131360521	131360522	rs9372987	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q23.2	NR	rs9372987-A	0.210868	5E-21				Affymetrix, Illumina [20825802] (imputed)	N
1587	chr6	131365375	131365376	rs7758016	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	6q23.2		rs7758016-A	0.38	1E-8		5.66	z score increase	Affymetrix [9061022] (imputed)	N
1587	chr6	131368492	131368493	rs9492790	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	6q23.2		rs9492790-C	NR	1E-15		0.018	[0.014-0.022] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
1587	chr6	131371197	131371198	rs4895910	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Urolithiasis	11,699 East Asian ancestry cases, 167,027 East Asian ancestry controls	NA	6q23.2		rs4895910-G	0.439273479	2E-9		0.08695693	[0.059-0.115] unit increase	Illumina [13429980] (imputed)	N
1587	chr6	131371747	131371748	rs7765757	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	6q23.2	EPB41L2	rs7765757-?	NR	2E-17		0.035741013	[0.027-0.044] unit increase	Illumina [27896057] (imputed)	N
1587	chr6	131372134	131372135	rs13437326	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	6q23.2		rs13437326-?	NR	8E-38				NR [~ 8900000] (imputed)	N
1587	chr6	131372608	131372609	rs35250412	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Urolithiasis	6,223 European ancestry cases, 482,123 European ancestry controls, 11,699 East Asian ancestry cases, 167,027 East Asian ancestry controls	NA	6q23.2		rs35250412-A	NR	3E-8		0.0824	[0.053-0.112] unit increase	Affymetrix, Illumina [25845211] (imputed)	N
1587	chr6	131378926	131378927	rs9398971	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	6q23.2		rs9398971-G	NR	8E-14		0.0168	[0.012-0.021] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
1587	chr6	131379490	131379491	rs78051210	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	6q23.2	EPB41L2	rs78051210-T	0.9229	2E-13		0.0263	[0.019-0.033] unit decrease	Affymetrix [18391927] (imputed)	N
1587	chr6	131379666	131379667	rs6903705	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	6q23.2		rs6903705-?	NR	1E-11				NR [~ 8900000] (imputed)	N
1587	chr6	131379666	131379667	rs6903705	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	6q23.2	NR	rs6903705-T	0.228086	4E-24		0.0368459	[0.03-0.044] unit increase	NR [19129689] (imputed)	N
1587	chr6	131380680	131380685	rs67937361	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6q23.2	EPB41L2	rs67937361-C	0.229898	8E-27		0.027797183	[0.023-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
1587	chr6	131380680	131380685	rs67937361	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	6q23.2	EPB41L2	rs67937361-C	0.229747	2E-18		0.022137271	[0.017-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1587	chr6	131385008	131385009	rs55898152	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6q23.2	EPB41L2	rs55898152-G	NR	2E-8		0.0169878	[0.011-0.023] unit decrease	Affymetrix [321016] (imputed)	N
1587	chr6	131388023	131388024	rs9483210	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	6q23.2	EPB41L2	rs9483210-T	0.228946	2E-15		0.020899883	[0.016-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1587	chr6	131388482	131388483	rs6901548	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	6q23.2		rs6901548-?	NR	2E-15				NR [~ 8900000] (imputed)	N
1587	chr6	131394740	131394741	rs7756781	32133506	Li H	2020-03-05	Schizophr Bull	Genome-wide Association Study of Creativity Reveals Genetic Overlap With Psychiatric Disorders, Risk Tolerance, and Risky Behaviors.	Creativity	4,664 Han Chinese ancestry individuals	NA	6q23.2	EPB41L2	rs7756781-G		9E-6		3.68	[NR] unit increase	Illumina [up to 5481607] (imputed)	N
1587	chr6	131396215	131396216	rs9375800	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q23.2	NR	rs9375800-A	0.215516	5E-12				Affymetrix, Illumina [24588908] (imputed)	N
1587	chr6	131402202	131402203	rs6569725	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	6q23.2		rs6569725-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1587	chr6	131403206	131403207	rs9388880	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q23.2	NR	rs9388880-A	0.210061	8E-25				Affymetrix, Illumina [24246363] (imputed)	N
1587	chr6	131403206	131403207	rs9388880	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	6q23.2	NR	rs9388880-A	0.176478	2E-21		0.023786	[0.019-0.029] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
1587	chr6	131415426	131415427	rs12197100	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	6q23.2		rs12197100-A	0.141014	2E-22		0.0293187	[0.024-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
1587	chr6	131415426	131415427	rs12197100	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	6q23.2	NR	rs12197100-A	0.138888	2E-26		0.027656	[0.023-0.033] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1587	chr6	131421039	131421040	rs13209786	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	6q23.2		rs13209786-A	0.769	8E-16		0.1	[0.08-0.13] % increase	Affymetrix [NR] (imputed)	N
1587	chr6	131421151	131421152	rs4895915	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6q23.2		rs4895915-?	NR	1E-11				NR [~ 8900000] (imputed)	N
1587	chr6	131422969	131422970	rs55996418	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6q23.2	AKAP7	rs55996418-T	NR	1E-8		0.018662	[0.012-0.025] unit decrease	Affymetrix [323123] (imputed)	N
1587	chr6	131429451	131429452	rs4895917	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	6q23.2		rs4895917-T	NR	4E-12		0.0133	[0.0096-0.017] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1587	chr6	131431457	131431458	rs605986	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6q23.2	AKAP7	rs605986-T	NR	8E-10		0.0189769	[0.013-0.025] unit decrease	Affymetrix [323123] (imputed)	N
1587	chr6	131438062	131438063	rs643459	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6q23.2	AKAP7	rs643459-A	NR	4E-8		0.0167718	[0.011-0.023] unit increase	Affymetrix [323123] (imputed)	N
1587	chr6	131446790	131446791	rs602848	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine with aura	5,118 European ancestry cases, 74,239 European ancestry controls	NA	6q23.2	intergenic	rs602848-C	0.16	5E-6		1.16	[1.09-1.24]	Affymetrix, Illumina [~ 2300000] (imputed)	N
1587	chr6	131446790	131446791	rs602848	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine - clinic-based	5,175 European ancestry clinic-based cases, 13,972 European ancestry clinic-based controls	NA	6q23.2	intergenic	rs602848-C	0.16	1E-6		1.18	[1.10-1.26]	Affymetrix, Illumina [~ 2300000] (imputed)	N
1588	chr6	131506164	131506165	rs1729549	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	6q23.2	NR	rs1729549-?	NR	1E-22				Affymetrix [NR]	N
1588	chr6	131563576	131563577	rs4629710	23502783	Weinhold N	2013-03-17	Nat Genet	The CCND1 c.870G>A polymorphism is a risk factor for t(11;14)(q13;q32) multiple myeloma.	Multiple myeloma (IgH translocation)	up to 1,660 European ancestry cases, 7,306 European ancestry controls		6q23.2	NR	rs4629710-A	0.2	6E-6	(non t11;14 and t4;14 IgH translocations vs. controls)	1.6	[1.31-1.96]	Illumina [414804] (imputed)	N
1589	chr6	131686489	131686490	rs144616495	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GRAMD1C	5,360 Icelandic ancestry individuals	NA	6q23.2		rs144616495-T	0.01238	1E-13		0.0970053	[0.071-0.123] unit increase	Illumina [7506463] (imputed)	N
1589	chr6	131696421	131696422	rs6902077	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	6q23.2	NR	rs6902077-?	NR	2E-6				Affymetrix [NR]	N
1589	chr6	131712922	131712923	rs117180384	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Bacterial meningitis	842 European ancestry cases, 82,778 European ancestry controls	NA	6q23.2	NR	rs117180384-?	NR	8E-6		4.5999	[-0.88928-10.08908] unit decrease	Illumina [at least 560000] (imputed)	N
1590	chr6	131746741	131746742	rs12215468	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	6q23.2	NR	rs12215468-?	NR	6E-12		6.887	NR z score increase	Illumina [at least 830937] (imputed)	N
1590	chr6	131757246	131757247	rs9375813	24763700	Vinayagamoorthy N	2014-04-24	PLoS One	New variants including ARG1 polymorphisms associated with C-reactive protein levels identified by genome-wide association and pathway analysis.	C-reactive protein levels	7,626 Korean ancestry individuals	903 Korean ancestry individuals	6q23.2	ARG1	rs9375813-A	0.115	3E-8		0.167	[NR] unit decrease	Affymetrix [1219546] (imputed)	N
1590	chr6	131783627	131783628	rs12717182	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	6q23.2	NR	rs12717182-G	NR	1E-9		0.0258	[0.017-0.034] unit increase	Affymetrix [9000000] (imputed)	N
1590	chr6	131809919	131809920	rs2807278	21552555	Wang K	2011-04-28	PLoS One	A genome-wide association study on obesity and obesity-related traits.	Obesity	520 European ancestry cases, 540 European ancestry controls	1,196 European ancestry individuals	6q23.2	ARG1	rs2807278-?	NR	3E-7	(WHR)			Illumina [~ 550000]	N
1590	chr6	131825593	131825594	rs143633948	27339598	Ulveling D	2016-07-29	Hepatology	A new 3p25 locus is associated with liver fibrosis progression in human immunodeficiency virus/hepatitis C virus-coinfected patients.	Liver fibrosis severity in HIV/hepatitis C co-infection	289 French ancestry cases	NA	6q23.2	intergenic	rs143633948-?		9E-8		1.07	[0.68-1.46] unit increase	Illumina [8426597] (imputed)	N
1590	chr6	131832723	131832724	rs56013828	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in diabetes	70,762 European ancestry individuals, 20,967 African American individuals	NA	6q23.2	ARG1	rs56013828-A	0.211	3E-8		0.642	[0.41-0.87] unit increase	Affymetrix [NR] (imputed)	N
1591	chr6	131870260	131870261	rs2608913	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	6q23.2	ARG1	rs2608913-C	0.2945	2E-11		6.714	NR z score decrease	Illumina [26237160] (imputed)	N
1591	chr6	131871861	131871861	rs558639320	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	6q23.2	AKAP7-MED23	rs558639320-G	0.7738	6E-10	(EA)	0.0026	[0.0018-0.0034] unit increase	Affymetrix [NR] (imputed)	N
1591	chr6	131873334	131873335	rs2608919	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	6q23.2		rs2608919-T	NR	2E-21		0.0175	[0.014-0.021] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
1591	chr6	131874386	131874386	rs11442179	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	6q23.2	ARG1	rs11442179-G	0.741	2E-15		0.003	[0.0022-0.0038] unit increase	Affymetrix [NR] (imputed)	N
1591	chr6	131876588	131876589	rs28612296	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	150,266 East Asian ancestry individuals	NA	6q23.2		rs28612296-A	0.324676	2E-10		0.0191745	[0.013-0.025] unit increase	Illumina [13478778] (imputed)	N
1591	chr6	131877966	131877966	rs11422720	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glutamine levels	114,751 European ancestry individuals	NA	6q23.2		rs11422720-G	0.776947	4E-13		0.0361623	[0.026-0.046] unit increase	NR [11722792] (imputed)	N
1591	chr6	131882077	131882078	rs9375818	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	6q23.2	ARG1	rs9375818-A	0.2545	2E-27		0.0031	[0.0023-0.0039] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
1591	chr6	131882077	131882078	rs9375818	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	6q23.2	ARG1	rs9375818-A	0.2294	5E-17		0.0026	[0.0018-0.0034] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
1591	chr6	131882077	131882078	rs9375818	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	165,726 East Asian ancestry individuals	NA	6q23.2	ARG1	rs9375818-A	0.3227	1E-8		0.004	[0.0026-0.0054] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
1591	chr6	131882077	131882078	rs9375818	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Chronic kidney disease	64,164 European and unknown ancestry cases, 561,055 European and unknown ancestry controls	NA	6q23.2	ARG1	rs9375818-A	0.25	2E-6		1.0446	[1.026-1.0636]	Affymetrix, Illumina [9585923] (imputed)	N
1591	chr6	131882077	131882078	rs9375818	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	6q23.2	AKAP7, ARG1	rs9375818-A	0.284	4E-10		0.365	[0.17-0.56] ml/min/1.73m2 decrease	Affymetrix, Illumina [at least 5248638] (imputed)	N
1591	chr6	131882570	131882571	rs2781656	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Glomerular filtration rate	143,658 Japanese ancestry individuals	NA	6q23.2	AKAP7, ARG1	rs2781656-?	NR	3E-12		0.02809	[0.02-0.036] unit decrease novel	Illumina [6108953] (imputed)	N
1591	chr6	131882570	131882571	rs2781656	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Creatinine levels	142,097 Japanese ancestry individuals	NA	6q23.2	AKAP7, ARG1	rs2781656-?	NR	3E-11		0.02604	[0.018-0.034] unit increase novel	Illumina [6108953] (imputed)	N
1591	chr6	131894357	131894358	rs17788484	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	6q23.2	ARG1	rs17788484-T	0.0325962	8E-27	(ornithine)	0.678	[0.55-0.8] unit increase	Illumina [13039987] (imputed)	N
1591	chr6	131894357	131894358	rs17788484	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	6q23.2	ARG1	rs17788484-T	0.0325962	1E-16	(arginine)	0.53	[0.4-0.66] unit decrease	Illumina [13039987] (imputed)	N
1591	chr6	131894357	131894358	rs17788484	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	1,509 European ancestry individuals	6q23.2	ARG1	rs17788484-T	0.0325962	1E-16	(arginine)	0.53	[0.4-0.66] unit decrease	Illumina [13039987] (imputed)	N
1591	chr6	131897277	131897278	rs2781668	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	6q23.2		rs2781668-T	0.17	7E-9		5.79	z score increase	Affymetrix [9061022] (imputed)	N
1591	chr6	131897277	131897278	rs2781668	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	6q23.2	ARG1	rs2781668-C	0.834113	8E-11		0.016676	[0.012-0.022] unit increase	Affymetrix [NR] (imputed)	N
1591	chr6	131897277	131897278	rs2781668	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6q23.2	NR	rs2781668-?	NR	9E-10				Affymetrix [~ 8270000] (imputed)	N
1591	chr6	131897277	131897278	rs2781668	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	6q23.2		rs2781668-?	NR	5E-10				NR [~ 8900000] (imputed)	N
1591	chr6	131897277	131897278	rs2781668	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6q23.2	ARG1	rs2781668-C	0.79484375	1E-7	(ARG1, 5867_60_3)	0.16156825	[0.1-0.22] unit increase	Illumina [> 1000000] (imputed)	N
1591	chr6	131898207	131898208	rs2246012	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	6q23.2	NR	rs2246012-C	0.1676	8E-12				NR [9056863] (imputed)	N
1591	chr6	131898207	131898208	rs2246012	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	6q23.2	ARG1	rs2246012-T	0.833664	2E-10		0.0167989	[0.012-0.022] unit increase	Affymetrix [NR] (imputed)	N
1591	chr6	131898207	131898208	rs2246012	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	6q23.2	NA	rs2246012-T	0.8512	1E-13		0.0161	[0.012-0.02] unit decrease	NR [~ 27400000] (imputed)	N
1591	chr6	131898207	131898208	rs2246012	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	6q23.2	ARG1, MED23	rs2246012-C	0.164823310878823	2E-8		0.0527	[0.034-0.071] unit increase	NR [5035015] (imputed)	N
1591	chr6	131918736	131918737	rs17060430	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	6q23.2	NR	rs17060430-A	NR	6E-13		0.0517	[0.038-0.066] unit decrease	Affymetrix [9000000] (imputed)	N
1591	chr6	131918736	131918737	rs17060430	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	6q23.2	NR	rs17060430-A	NR	4E-13		0.052	[0.038-0.066] unit increase	Affymetrix [9000000] (imputed)	N
1591	chr6	131924688	131924689	rs2248551	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	417,580 European ancestry individuals	NA	6q23.2		rs2248551-G	0.834778	7E-16		0.021	[0.015-0.027] unit decrease	NR [7250403] (imputed)	N
1591	chr6	131924688	131924689	rs2248551	25245031	Luneburg N	2014-09-21	Circ Cardiovasc Genet	Genome-wide association study of L-arginine and dimethylarginines reveals novel metabolic pathway for symmetric dimethylarginine.	L-arginine levels	3,747 European ancestry individuals, 2,992 individuals,	1,159  European ancestry individuals	6q23.2	MED23, ENPP3	rs2248551-A	0.146	4E-19		4.022	[2.97-5.07] unit increase	Affymetrix, Illumina [up to 2200000] (imputed)	N
1591	chr6	131924745	131924746	rs79187133	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	6q23.2	NR	rs79187133-C	NR	2E-15		0.0984	[0.074-0.123] unit increase	Affymetrix [9000000] (imputed)	N
1591	chr6	131926333	131926334	rs2608953	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	6q23.2	NR	rs2608953-C	0.7889	3E-12		0.0348	[0.025-0.045] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1591	chr6	131929309	131929309	rs71753454	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	6q23.2	NR	rs71753454-A	0.783939	4E-8		0.0201176	[0.013-0.027] unit increase	Affymetrix [16577424] (imputed)	N
1591	chr6	131931091	131931092	rs2245133	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	6q23.2		rs2245133-?	NR	8E-15		0.0212917	[0.016-0.027] unit decrease	NR [6912294] (imputed)	N
1591	chr6	131934220	131934224	rs143110120	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	6q23.2		rs143110120-C	NR	2E-9		0.0138	[0.0093-0.0183] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1591	chr6	131934985	131934986	rs3822868	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	6q23.2	NR	rs3822868-G	0.835029	1E-15		0.021918	[0.017-0.027] unit increase	Affymetrix [16668957] (imputed)	N
1591	chr6	131940483	131940484	rs10499183	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	6q23.2		rs10499183-C	NR	9E-10		0.0438	[0.03-0.058] unit increase	Affymetrix, Illumina [25845091] (imputed)	N
1591	chr6	131954796	131954797	rs7739842	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	6q23.2	NR	rs7739842-G	0.1939	2E-8		0.0329	[0.021-0.044] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1591	chr6	131954796	131954797	rs7739842	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	6q23.2	ENPP3	rs7739842-G	0.356	2E-11		1.05	[1.03-1.06]	Affymetrix, Illumina [11800000] (imputed)	N
1591	chr6	131958484	131958485	rs9375819	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	6q23.2	NR	rs9375819-C	NR	4E-26		0.0301	[0.024-0.036] unit decrease	Affymetrix [9000000] (imputed)	N
1591	chr6	131960897	131960898	rs12663047	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	6q23.2		rs12663047-G	0.16	2E-9		6.0	z score increase	Affymetrix [9061022] (imputed)	N
1591	chr6	131967032	131967033	rs7766061	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	6q23.2	NR	rs7766061-?	NR	5E-6		0.0081433	[0.0047-0.0116] unit decrease	Affymetrix [805426] (imputed)	N
1591	chr6	131969390	131969391	rs17060499	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	6q23.2	NR	rs17060499-T	NR	1E-9		0.0194	[0.013-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
1591	chr6	131969390	131969391	rs17060499	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	6q23.2	NR	rs17060499-T	NR	2E-11		0.0218	[0.015-0.028] unit decrease	Affymetrix [9000000] (imputed)	N
1591	chr6	131974982	131974983	rs12665245	31545351	Irvin MR	2019-09-23	Am J Hypertens	Genome wide association study of apparent treatment resistant hypertension in the CHARGE consortium: The CHARGE Pharmacogenetics Working Group.	Resistant hypertension	228 African American ancestry cases, 2,480 African American ancestry controls	NA	6q23.2	ENPP3	rs12665245-C	0.14	1E-6		2.7777777	[1.85-4.17]	Affymetrix, Illumina [NR] (imputed)	N
1591	chr6	131978116	131978117	rs55824194	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	6q23.2	NR	rs55824194-T	NR	3E-10		0.059	[0.041-0.077] unit decrease	Affymetrix [9000000] (imputed)	N
1592	chr6	131999581	131999582	rs3883882	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	6q23.2	ENPP3	rs3883882-A	0.63	1E-9		6.11	z-score increase	Affymetrix [4311822] (imputed)	N
1592	chr6	131999581	131999582	rs3883882	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	6q23.2	NR	rs3883882-A	NR	8E-142		0.0661	[0.061-0.071] unit decrease	Affymetrix [9000000] (imputed)	N
1592	chr6	131999581	131999582	rs3883882	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	6q23.2	NR	rs3883882-A	NR	4E-9		0.0146	[0.0097-0.0195] unit increase	Affymetrix [9000000] (imputed)	N
1592	chr6	132047244	132047245	rs9321309	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	6q23.2	NR	rs9321309-?	NR	4E-16				Affymetrix [NR]	N
1592	chr6	132049506	132049507	rs17185166	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	6q23.2	NR	rs17185166-A	NR	6E-13		0.0358	[0.026-0.046] unit increase	Affymetrix [9000000] (imputed)	N
1592	chr6	132049656	132049657	rs453639	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	6q23.2		rs453639-A	NR	1E-9		0.0146	[0.0099-0.0193] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
1592	chr6	132049656	132049657	rs453639	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	6q23.2	CTAGE9	rs453639-C	0.358867	3E-13		0.00171983	[0.0012-0.0022] unit decrease	Affymetrix [13995440] (imputed)	N
1592	chr6	132052797	132052798	rs7745372	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	6q23.2	NR	rs7745372-T	NR	7E-14		0.0371	[0.027-0.047] unit decrease	Affymetrix [9000000] (imputed)	N
1592	chr6	132058946	132058947	rs12199015	23149075	Aslibekyan S	2012-11-10	Nutr Metab Cardiovasc Dis	Preliminary evidence of genetic determinants of adiponectin response to fenofibrate in the Genetics of Lipid Lowering Drugs and Diet Network.	Response to fenofibrate (adiponectin levels)	793 European ancestry individuals	NA	6q23.2	ENPP3	rs12199015-?	NR	5E-6	(Response)	0.09	[0.051-0.129] ng/dL increase	Affymetrix [2543887] (imputed)	N
1592	chr6	132061419	132061420	rs17601580	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	6q23.2	NR	rs17601580-A	NR	2E-13		0.0253	[0.019-0.032] unit increase	Affymetrix [9000000] (imputed)	N
1592	chr6	132061419	132061420	rs17601580	28044437	McDonald MN	2017-01-02	J Cachexia Sarcopenia Muscle	Body mass index change in gastrointestinal cancer and chronic obstructive pulmonary disease is associated with Dedicator of Cytokinesis 1.	Body mass index (change over time) in lung cancer	112 cases	NA	6q23.2	ENPP3	rs17601580-?		2E-6		0.112	[0.069-0.155] unit decrease	Affymetrix [418365]	N
1592	chr6	132086492	132086493	rs17060705	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Phosphorus levels	42,793 Japanese ancestry individuals	NA	6q23.2	ENPP3, MIR548H5	rs17060705-?	NR	1E-8		0.05611	[0.037-0.075] unit increase novel	Illumina [6108953] (imputed)	N
1592	chr6	132093501	132093502	rs12524635	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	6q23.2	NR	rs12524635-T	NR	9E-75		0.0845	[0.075-0.094] unit increase	Affymetrix [9000000] (imputed)	N
1592	chr6	132097905	132097906	rs78231648	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	6q23.2	NR	rs78231648-C	NR	7E-11		0.0332	[0.023-0.043] unit increase	Affymetrix [9000000] (imputed)	N
1592	chr6	132116805	132116806	rs72983636	33592630	Herrera-Rivero M	2021-02-16	Thromb Haemost	Single- and Multimarker Genome-Wide Scans Evidence Novel Genetic Risk Modifiers for Venous Thromboembolism.	Venous thromboembolism	964 European ancestry cases, 899 European ancestry controls	NA	6q23.2	MIR548H5	rs72983636-G	NR	8E-24		39.12	[19.15-79.92]	Illumina [484621]	N
1593	chr6	132128563	132128564	rs1800949	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	6q23.2		rs1800949-T	NR	2E-8		0.0135	[0.0088-0.0182] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
1593	chr6	132149075	132149076	rs117080755	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	6q23.2	NR	rs117080755-T	NR	9E-32		0.1012	[0.084-0.118] unit increase	Affymetrix [9000000] (imputed)	N
1593	chr6	132181590	132181591	rs190947144	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Chronic lymphocytic leukemia	764 White British ancestry cases, 272,079 White British ancestry controls	NA	6q23.2		rs190947144-?	NR	4E-7		21.6136	[20.43-22.8]	NR [663083]	N
1593	chr6	132181643	132181644	rs374270497	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Serum phosphate levels	400,159 European ancestry individuals	NA	6q23.2		rs374270497-?	NR	9E-13		0.586217	[0.42-0.75] unit decrease	NR [9800000] (imputed)	N
1593	chr6	132193215	132193216	rs148462924	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Serum phosphate levels	400,159 European ancestry individuals	NA	6q23.2		rs148462924-?	NR	4E-11		0.662737	[0.46-0.86] unit decrease	NR [9800000] (imputed)	N
1593	chr6	132193215	132193216	rs148462924	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	6q23.2	NR	rs148462924-G	NR	2E-9		0.5251	[0.35-0.7] unit decrease	Affymetrix [9000000] (imputed)	N
1593	chr6	132193394	132193395	rs7769712	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	6q23.2	NR	rs7769712-C	NR	7E-14		0.0363	[0.027-0.046] unit increase	Affymetrix [9000000] (imputed)	N
1593	chr6	132199418	132199419	rs62424521	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6q23.2	ENPP1	rs62424521-T	0.0046	2E-7		0.3142	[0.2-0.43] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1593	chr6	132200262	132200263	rs112897860	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CTGF	5,361 Icelandic ancestry individuals	NA	6q23.2		rs112897860-C	0.01308	2E-13		0.577791	[0.42-0.73] unit increase	Illumina [7506463] (imputed)	N
1593	chr6	132212807	132212808	rs7754859	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	6q23.2	NR	rs7754859-T	NR	4E-15		0.0232	[0.017-0.029] unit increase	Affymetrix [9000000] (imputed)	N
1593	chr6	132217686	132217687	rs7753048	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	6q23.2	NR	rs7753048-T	NR	2E-13		0.0308	[0.023-0.039] unit increase	Affymetrix [9000000] (imputed)	N
1593	chr6	132228768	132228769	rs6907728	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6q23.2	ENPP1	rs6907728-C	0.186	3E-6	(CRP )	0.04	[NR] ng/mL increase	Illumina [899892]	N
1593	chr6	132229581	132229582	rs9402365	34241534	Lu Y	2021-07-09	Circ Genom Precis Med	Multiethnic Genome-wide Association Study of Subclinical Atherosclerosis in Individuals with Type 2 Diabetes.	Coronary artery calcification in type 2 diabetes (excluding prevalent cardiovascular disease)	1,248 African American individuals	NA	6q23.2		rs9402365-G	0.28	9E-8		0.56	[0.34-0.78] unit increase	Affymetrix, Illumina [19600000] (imputed)	N
1594	chr6	132292575	132292576	rs1930995	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CTGF	5,361 Icelandic ancestry individuals	NA	6q23.2		rs1930995-T	0.1998	3E-55		0.343777	[0.3-0.39] unit decrease	Illumina [7506463] (imputed)	N
1594	chr6	132297508	132297509	rs9388953	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6q23.2	CTGF	rs9388953-G	0.78890625	9E-32	(CTGF, 2975_19_2)	0.35260823	[0.29-0.41] unit increase	Illumina [> 1000000] (imputed)	N
1594	chr6	132317572	132317573	rs233937	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	6q23.2	NR	rs233937-?	NR	3E-9				Affymetrix [NR]	N
1594	chr6	132375482	132375483	rs4895927	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6q23.2		rs4895927-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1595	chr6	132397901	132397902	rs11962845	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (unclassified genus belonging to family Lachnospiraceae)	1,068 Japanese ancestry individuals	NA	6q23.2	RP11-69I8.3	rs11962845-G	0.09	5E-7		0.0761	[0.047-0.105] unit decrease	Illumina [6380737] (imputed)	N
1595	chr6	132397901	132397902	rs11962845	26301497	Dina C	2015-08-24	Nat Genet	Genetic association analyses highlight biological pathways underlying mitral valve prolapse.	Mitral valve prolapse	1,442 European ancestry cases, 2,439 European ancestry controls	1,422 European ancestry cases, 6,779 European ancestry controls	6q23.2	CTGF, LOC100507254	rs11962845-A	0.16	8E-6		1.23	[1.12-1.34]	Affymetrix, Illumina [~ 4800000] (imputed)	N
1595	chr6	132490259	132490260	rs142133424	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	6q23.2		rs142133424-A	0.01	9E-9		5.75	z score increase	Affymetrix [9061022] (imputed)	N
1595	chr6	132494449	132494450	rs73551714	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mumps	31,227 European ancestry cases, 54,153 European ancestry controls	NA	6q23.2	NR	rs73551714-?	NR	4E-6		1.1972	[0.66-1.73] unit decrease	Illumina [at least 560000] (imputed)	N
1596	chr6	132565772	132565773	rs12212796	26718567	Williams SR	2015-12-30	Neurology	Shared genetic susceptibility of vascular-related biomarkers with ischemic and recurrent stroke.	Thrombomodulin levels in ischemic stroke	up to 1,725 European ancestry cases, up to 258 African ancestry cases, up to 117 cases	NA	6q23.2	NR	rs12212796-?	NR	3E-6				Illumina [7500450] (imputed)	N
1596	chr6	132586324	132586325	rs188350746	34779240	Cheng B	2021-11-01	Bone Joint Res	Gut microbiota is associated with bone mineral density : an observational and genome-wide environmental interaction analysis in the UK Biobank cohort.	Femur total bone mineral density x gut microbiota (genus Lactococcus) interaction	2,293 European ancestry individuals	NA	6q23.2		rs188350746-A	NR	9E-9		0.505	[0.33-0.68] unit decrease	Affymetrix [509886] (imputed)	N
1596	chr6	132643116	132643117	rs589756	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6q23.2	MOXD1	rs589756-A	0.129	9E-6	(Weight )	0.02	[NR] kg increase	Illumina [899892]	N
1596	chr6	132643116	132643117	rs589756	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6q23.2	MOXD1	rs589756-A	0.129	5E-6	(WC )	0.03	[NR] cm increase	Illumina [899892]	N
1596	chr6	132643116	132643117	rs589756	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6q23.2	MOXD1	rs589756-A	0.129	2E-6	(VO2max )	0.04	[NR] mL/min increase	Illumina [899892]	N
1596	chr6	132643116	132643117	rs589756	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6q23.2	MOXD1	rs589756-A	0.129	2E-6	(Sleep energy expenditure )	0.03	[NR] kcal/d increase	Illumina [899892]	N
1596	chr6	132643116	132643117	rs589756	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6q23.2	MOXD1	rs589756-A	0.129	1E-7	(Lean body mass )	0.04	[NR] kg increase	Illumina [899892]	N
1596	chr6	132643116	132643117	rs589756	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6q23.2	MOXD1	rs589756-A	0.129	1E-7	(Fat free mass )	0.04	[NR] kg increase	Illumina [899892]	N
1596	chr6	132643116	132643117	rs589756	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6q23.2	MOXD1	rs589756-A	0.129	1E-6	(Total energy expenditure )	0.04	[NR] kcal/d increase	Illumina [899892]	N
1597	chr6	132687247	132687248	rs9373014	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	6q23.2	MOXD1	rs9373014-?	NR	3E-10		0.029544754	[0.02-0.039] unit decrease	Illumina [27896057] (imputed)	N
1597	chr6	132730371	132730372	rs7743622	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6q23.2		rs7743622-?	NR	3E-15				NR [~ 8900000] (imputed)	N
1598	chr6	132779501	132779502	rs11154680	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6q23.2	NR	rs11154680-?	NR	2E-12				Affymetrix [~ 8270000] (imputed)	N
1598	chr6	132779501	132779502	rs11154680	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	6q23.2		rs11154680-?	NR	2E-12				NR [~ 8900000] (imputed)	N
1598	chr6	132815561	132815562	rs144488134	32830257	Castellucci LC	2020-08-23	Clin Infect Dis	A Genome-Wide Association Study Identifies SERPINB10, CRLF3, STX7, LAMP3, IFNG-AS1 and KRT80 As Risk Loci Contributing to Cutaneous Leishmaniasis In Brazil.	Cutaneous leishmaniasis	2,066 Hispanic/Latino cases, 2,046 Hispanic/Latino controls	NR	6q23.2	STX7	rs144488134-A		6E-6		0.821	[0.754-0.894]	Illumina [4498586] (imputed)	N
1598	chr6	132820279	132820279	rs147324647	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	6q23.2		rs147324647-CCT	NR	1E-8		0.0115	[0.0076-0.0154] unit increase	Affymetrix, Illumina [20536605] (imputed)	N
1598	chr6	132820279	132820279	rs147324647	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	6q23.2	STX7	rs147324647-CCT	0.4551	3E-9		0.02161217	[0.014-0.029] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1598	chr6	132820279	132820279	rs147324647	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	6q23.2	STX7	rs147324647-CCT	0.455	2E-9		0.02190679	[0.015-0.029] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1598	chr6	132820279	132820279	rs147324647	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	6q23.2	STX7	rs147324647-CCT	0.455	2E-9		0.02184796	[0.015-0.029] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1598	chr6	132820279	132820279	rs147324647	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	6q23.2	STX7	rs147324647-CCT	0.455	7E-10		0.02235024	[0.015-0.029] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1598	chr6	132830943	132830944	rs9493341	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	6q23.2	STX7	rs9493341-G	0.3787	5E-13		0.02673858	[0.019-0.034] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1598	chr6	132833014	132833015	rs7757421	29855537	Hirata T	2018-05-31	Sci Rep	Japanese GWAS identifies variants for bust-size, dysmenorrhea, and menstrual fever that are eQTLs for relevant protein-coding or long non-coding RNAs.	Vaginal discharge (itching)	676 Japanese ancestry female cases, 5,058 Japanese ancestry female controls	669 Japanese ancestry female cases, 4,945 Japanese ancestry female controls	6q23.2	NR	rs7757421-G	0.229946876	6E-6		0.23504275	[0.13-0.34] unit decrease	Affymetrix [536506]	N
1598	chr6	132834517	132834518	rs3813356	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	6q23.2	STX7	rs3813356-T	0.449674	5E-27		0.02427148	[0.02-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
1598	chr6	132834517	132834518	rs3813356	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6q23.2	STX7	rs3813356-T	0.449664	1E-28		0.025081253	[0.021-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
1598	chr6	132834517	132834518	rs3813356	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	6q23.2	STX7	rs3813356-T	0.449654	1E-23		0.022305189	[0.018-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1598	chr6	132834517	132834518	rs3813356	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	6q23.2	STX7	rs3813356-T	0.449688	5E-12		0.015604519	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1598	chr6	132834517	132834518	rs3813356	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	6q23.2	STX7	rs3813356-T	0.44965	5E-29		0.025062677	[0.021-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
1598	chr6	132834517	132834518	rs3813356	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6q23.2	STX7	rs3813356-T	0.449644	5E-30		0.0255208	[0.021-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
1598	chr6	132834517	132834518	rs3813356	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q23.2	NR	rs3813356-C	0.559074	2E-23				Affymetrix, Illumina [22063850] (imputed)	N
1598	chr6	132834517	132834518	rs3813356	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	6q23.2	NR	rs3813356-C	0.551526	6E-26		0.020082	[0.016-0.024] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
1598	chr6	132834517	132834518	rs3813356	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q23.2	NR	rs3813356-T	0.421768	1E-13				Affymetrix, Illumina [21126107] (imputed)	N
1598	chr6	132834517	132834518	rs3813356	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	6q23.2	NR	rs3813356-T	0.449165	5E-11		0.013314	[0.0093-0.0173] SD unit increase	Affymetrix, Illumina [50282193] (imputed)	N
1598	chr6	132834517	132834518	rs3813356	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	6q23.2		rs3813356-?	NR	3E-19				NR [~ 8900000] (imputed)	N
1598	chr6	132834517	132834518	rs3813356	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	6q23.2	NR	rs3813356-T	NR	4E-8		0.0222057	[0.014-0.03] unit increase	Affymetrix [16832071] (imputed)	N
1598	chr6	132835567	132835568	rs4373374	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6q23.2	STX7	rs4373374-T	NR	3E-9		0.0287858	[0.019-0.038] unit increase	Affymetrix [321114] (imputed)	N
1598	chr6	132835567	132835568	rs4373374	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6q23.2	NR	rs4373374-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
1598	chr6	132835649	132835650	rs4470875	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6q23.2	STX7	rs4470875-T	NR	2E-8		0.0275979	[0.018-0.037] unit increase	Affymetrix [319769] (imputed)	N
1598	chr6	132835649	132835650	rs4470875	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6q23.2	STX7	rs4470875-T	NR	7E-9		0.0281892	[0.019-0.038] unit increase	Affymetrix [319769] (imputed)	N
1598	chr6	132835649	132835650	rs4470875	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6q23.2	STX7	rs4470875-T	NR	2E-8		0.0279277	[0.018-0.038] unit increase	Affymetrix [321169] (imputed)	N
1598	chr6	132836303	132836304	rs56090758	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6q23.2	STX7	rs56090758-A	0.472961	8E-12		0.015161694	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1598	chr6	132861903	132861904	rs367949909	33430342	Younes N	2021-01-07	J Pers Med	A Whole-Genome Sequencing Association Study of Low Bone Mineral Density Identifies New Susceptibility Loci in the Phase I Qatar Biobank Cohort.	Total body bone mineral density	3,000 Qatari ancestry individuals	NA	6q23.2		rs367949909-C	NR	5E-8				Illumina [1084750]	N
1598	chr6	132888830	132888831	rs9493381	29682794	Szekely E	2018-04-22	Genet Epidemiol	Genetic associations with childhood brain growth, defined in two longitudinal cohorts.	Cerebellum growth	581 European ancestry individuals, 31 African American individuals, 8 Asian American individuals, 15 admixed individuals, 80 other ancestries individuals	NA	6q23.2	TAAR8, TAAR6	rs9493381-?	NR	2E-6				Illumina [at least 653030]	N
1598	chr6	132888938	132888939	rs9399032	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine without aura	7,107 European ancestry cases, 69,427 European ancestry controls	NA	6q23.2	intergenic	rs9399032-A	0.33	4E-6		1.1	[1.06-1.15]	Affymetrix, Illumina [~ 2300000] (imputed)	N
1598	chr6	132898362	132898363	rs6930765	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Corpus callosum mid-anterior volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	6q23.2	NR	rs6930765-?		4E-6				Illumina [4322238] (imputed)	N
1599	chr6	132910542	132910543	rs41286168	33035477	Gisladottir RS	2020-09-25	Curr Biol	Sequence Variants in TAAR5 and Other Loci Affect Human Odor Perception and Naming.	Odorant perception	9,122 Icelandic ancestry individuals	2,204 Icelandic ancestry individuals	6q23.2	TAAR5	rs41286168-G	0.022	6E-15	(Fish intensity)	0.37	[-0.46-0.27] unit decrease	Illumina [36500000] (imputed)	N
1599	chr6	132944522	132944523	rs9385619	29478026	Shahin MH	2018-02-24	J Am Heart Assoc	Genome-Wide Association Approach Identified Novel Genetic Predictors of Heart Rate Response to ?-Blockers.	Heart rate response to beta blockers (atenolol add-on therapy)	198 European American hypertensive individuals, 127 African American hypertensive individuals	NA	6q23.2	NR	rs9385619-C	0.72	8E-6	(AA)	4.35	[2.53-6.17] bpm increase	Illumina [at least 1100000] (imputed)	N
1599	chr6	132957227	132957228	rs184898731	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	6q23.2	Intergenic	rs184898731-G	NR	9E-6		0.237245	[0.13-0.34] unit decrease	Illumina [13520550] (imputed)	N
1599	chr6	132963040	132963041	rs6569819	32063569	Alemany-Navarro M	2020-01-29	J Affect Disord	Exploring genetic variants in obsessive compulsive disorder severity: A GWAS approach.	Compulsion score in obsessive compulsive disorder	376 Spanish ancestry individuals	NA	6q23.2	TAAR1	rs6569819-?	NR	4E-6		1.3260514	NR unit decrease	Illumina [338357]	N
1600	chr6	133055611	133055612	rs764263	30954325	Kamboh MI	2019-03-11	Neurobiol Aging	Population-based genome-wide association study of cognitive decline in older adults free of dementia: identification of a novel locus for the attention domain.	Age-related cognitive decline (language) (slope of z-scores)	1,145 European ancestry individuals	NA	6q23.2	VNN3	rs764263-C	0.55	6E-6		0.18	unit increase	Illumina [5600000] (imputed)	N
1600	chr6	133062915	133062916	rs13214628	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder in trauma exposed individuals	13,393 European ancestry cases, 10,701 European ancestry controls		6q23.2	NR	rs13214628-G	0.9730667	1E-6		1.1337868	[1.08-1.19]	Affymetrix [7791636] (imputed)	N
1600	chr6	133146795	133146796	rs7769051	21150874	McDonough CW	2010-12-08	Kidney Int	A genome-wide association study for diabetic nephropathy genes in African Americans.	Type 2 diabetes nephropathy	965 African American cases, 1,029 African American controls	709 African American cases, 690 African American controls	6q23.2	RPS12	rs7769051-A	0.29	2E-6		1.28	[1.16-1.42]	Affymetrix [832357]	N
1601	chr6	133210360	133210361	rs75859381	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	6q23.2	RPS12	rs75859381-T	0.9673	1E-10		0.2207	[0.15-0.29] unit decrease	NR [7784415] (imputed)	N
1601	chr6	133218970	133218971	rs73547611	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	6q23.2	NR	rs73547611-?	NR	1E-8				Illumina [7760689] (imputed)	N
1601	chr6	133228838	133228839	rs421500	30319691	Liu C	2018-09-24	Front Genet	Genome-Wide Association and Mechanistic Studies Indicate That Immune Response Contributes to Alzheimer's Disease Development.	Cognitive impairment test score	235 early mild cognitive impairment cases, 249 late mild cognitive impairment cases, 47 Alzheimer's disease cases, 281 controls.	NA	6q23.2	Intergenic	rs421500-?		8E-6		1.758189	[NR] unit increase	Illumina [575353]	N
1601	chr6	133240018	133240019	rs17061975	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	6q23.2	RPS12	rs17061975-T	0.914976	2E-13		0.0243935	[0.018-0.031] unit decrease	NR [13737936] (imputed)	N
1601	chr6	133240018	133240019	rs17061975	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6q23.2		rs17061975-?	NR	2E-23		0.0354202	[0.028-0.043] unit decrease	Affymetrix [20259828] (imputed)	N
1601	chr6	133244290	133244291	rs271128	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	6q23.2	NR	rs271128-C	0.4905	6E-10				NR [9056863] (imputed)	N
1601	chr6	133255251	133255252	rs1947640	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	6q23.2		rs1947640-A	0.36	4E-9		5.88	z score increase	Affymetrix [9061022] (imputed)	N
1601	chr6	133281990	133281991	rs271144	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	6q23.2		rs271144-?	NR	3E-21				NR [~ 8900000] (imputed)	N
1601	chr6	133292439	133292440	rs378273	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q23.2	RPS12	rs378273-G	0.667218	5E-8	(210 ms)	0.0326024	[0.021-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
1601	chr6	133292439	133292440	rs378273	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q23.2	RPS12	rs378273-G	0.667218	3E-8	(212 ms)	0.0328722	[0.021-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
1601	chr6	133292439	133292440	rs378273	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q23.2	RPS12	rs378273-G	0.667218	2E-8	(206 ms)	0.0334347	[0.022-0.045] unit decrease	Affymetrix [10000000] (imputed)	N
1601	chr6	133292439	133292440	rs378273	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q23.2	RPS12	rs378273-G	0.667218	2E-8	(198 ms)	0.0335598	[0.022-0.045] unit decrease	Affymetrix [10000000] (imputed)	N
1601	chr6	133292439	133292440	rs378273	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q23.2	RPS12	rs378273-G	0.667218	1E-8	(204 ms)	0.0336991	[0.022-0.045] unit decrease	Affymetrix [10000000] (imputed)	N
1602	chr6	133315803	133315804	rs271170	23437003	Paternoster L	2013-02-21	PLoS Genet	Genetic determinants of trabecular and cortical volumetric bone mineral densities and bone microstructure.	Bone mineral density	up to 5,878 European ancestry individuals	up to 1,052 European ancestry individuals	6q23.2	LOC285735	rs271170-T	0.33	3E-12	(Cortical vBMD)	0.11	[0.071-0.149] unit decrease	Illumina [2401124] (imputed)	N
1602	chr6	133339485	133339486	rs10713212	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6q23.2		rs10713212-?	NR	1E-89		0.0427516	[0.038-0.047] unit increase	Affymetrix [20259828] (imputed)	N
1602	chr6	133339485	133339486	rs10713212	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	6q23.2	LINC00326	rs10713212-GA	0.335076	2E-16	(men)	0.0399616	[0.029-0.051] unit increase	NR [17166351] (imputed)	N
1602	chr6	133339485	133339486	rs10713212	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	6q23.2	LINC00326	rs10713212-GA	0.33465	2E-30		0.0380274	[0.031-0.045] unit increase	NR [17166351] (imputed)	N
1602	chr6	133339485	133339486	rs10713212	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	6q23.2	LINC00326	rs10713212-GA	0.334277	7E-16	(women)	0.0375442	[0.028-0.047] unit increase	NR [17166351] (imputed)	N
1602	chr6	133350935	133350936	rs3012465	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	6q23.2	LINC00326	rs3012465-A	0.348147	5E-24		0.0202127	[0.016-0.024] unit increase	NR [13737936] (imputed)	N
1602	chr6	133350935	133350936	rs3012465	24945404	Kemp JP	2014-06-19	PLoS Genet	Phenotypic dissection of bone mineral density reveals skeletal site specificity and facilitates the identification of novel loci in the genetic regulation of bone mass attainment.	Bone mineral density (paediatric, skull)	7,976 European ancestry children, 289 Surinamese ancestry children, 300 Turkish ancestry children, 232 Moroccan ancestry children, 588 children	NA	6q23.2	EYA4	rs3012465-G	NR	2E-12	(EA)	0.1215	[0.088-0.155] unit increase	Illumina [~ 2500000] (imputed)	N
1602	chr6	133350935	133350936	rs3012465	24945404	Kemp JP	2014-06-19	PLoS Genet	Phenotypic dissection of bone mineral density reveals skeletal site specificity and facilitates the identification of novel loci in the genetic regulation of bone mass attainment.	Bone mineral density (paediatric, skull)	7,976 European ancestry children, 289 Surinamese ancestry children, 300 Turkish ancestry children, 232 Moroccan ancestry children, 588 children	NA	6q23.2	EYA4	rs3012465-G	0.67	8E-17		0.127	[0.098-0.156] unit increase	Illumina [~ 2500000] (imputed)	N
1603	chr6	133443661	133443662	rs6941949	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Arrhythmia	17,861 Japanese ancestry cases, 194,592 Japanese ancestry controls	NA	6q23.2		rs6941949-T	0.305956944	2E-9		1.0763657	[1.050667986-1.102691909]	Illumina [8919992] (imputed)	N
1603	chr6	133474302	133474303	rs12208899	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	6q23.2	LINC00326, EYA4	rs12208899-A	0.21	2E-8		1.05	[1.03-1.07]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1603	chr6	133480939	133480940	rs1856293	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI in non-smokers	75,379 European ancestry women, 45,811 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	6q23.2	EYA4	rs1856293-A	0.516	2E-9	(EA)	0.02	[0.014-0.026] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1603	chr6	133480939	133480940	rs1856293	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	6q23.2	EYA4	rs1856293-A	0.517	1E-7	(EA)	0.016	[0.01-0.022] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1603	chr6	133487439	133487440	rs799227	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6q23.2	MTCYBP4	rs799227-C	NR	4E-8		0.0155173	[0.01-0.021] unit decrease	Affymetrix [321016] (imputed)	N
1603	chr6	133487439	133487440	rs799227	28115739	Smith AH	2017-01-24	Mol Psychiatry	Genome-wide association study of therapeutic opioid dosing identifies a novel locus upstream of OPRM1.	Methadone dose in opioid dependence	1,027 European American cases, 383 African American cases	NA	6q23.2	EYA4	rs799227-C	0.23027180156657961	6E-6	(AA)	0.4082	[0.23-0.58] unit increase	Illumina [at least 988306] (imputed)	N
1603	chr6	133499723	133499724	rs112599943	32841424	Herrera-Luis E	2020-08-25	Pediatr Allergy Immunol	Genome-wide association study reveals a novel locus for asthma with severe exacerbations in diverse populations.	Asthma with severe exacerbations	1,283 Latino cases, 2,027 Latino controls	448 African American cases, 595 African American controls	6q23.2	NR	rs112599943-C	0.039	2E-6	(Latino)	1.92	[1.47-2.50]	Affymetrix [9737707] (imputed)	N
1603	chr6	133499723	133499724	rs112599943	32841424	Herrera-Luis E	2020-08-25	Pediatr Allergy Immunol	Genome-wide association study reveals a novel locus for asthma with severe exacerbations in diverse populations.	Asthma with severe exacerbations	1,283 Latino cases, 2,027 Latino controls	448 African American cases, 595 African American controls	6q23.2	EYA4	rs112599943-C	NR	6E-7		1.7	[1.38-2.09]	Affymetrix [9737707] (imputed)	N
1603	chr6	133540194	133540195	rs9402490	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6q23.2		rs9402490-?	NR	1E-182		0.0577432	[0.054-0.062] unit increase	Affymetrix [20259828] (imputed)	N
1603	chr6	133540194	133540195	rs9402490	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	6q23.2	EYA4	rs9402490-G	0.447334	2E-32	(men)	0.0595915	[0.05-0.07] unit increase	NR [17166351] (imputed)	N
1603	chr6	133540194	133540195	rs9402490	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	6q23.2	EYA4	rs9402490-G	0.444894	9E-67		0.0563279	[0.05-0.063] unit increase	NR [17166351] (imputed)	N
1603	chr6	133540194	133540195	rs9402490	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	6q23.2	EYA4	rs9402490-G	0.442763	2E-36	(women)	0.0547067	[0.046-0.064] unit increase	NR [17166351] (imputed)	N
1603	chr6	133558300	133558301	rs564889095	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6q23.2	NR	rs564889095-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
1604	chr6	133562455	133562456	rs498079	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	6q23.2		rs498079-G	0.28	2E-21		9.52	z score increase	Affymetrix [9061022] (imputed)	N
1604	chr6	133562455	133562456	rs498079	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	6q23.2	NR	rs498079-C	0.7478	4E-8	(European)	0.0387	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
1604	chr6	133568150	133568151	rs511490	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6q23.2	EYA4	rs511490-T	NR	2E-11		0.0237569	[0.017-0.031] unit decrease	Affymetrix [323123] (imputed)	N
1604	chr6	133569834	133569835	rs1338009	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	6q23.2		rs1338009-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1604	chr6	133571271	133571272	rs519332	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	6q23.2		rs519332-A	0.28	7E-9		5.8	z score increase	Affymetrix [9061022] (imputed)	N
1604	chr6	133571271	133571272	rs519332	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	6q23.2	NR	rs519332-A	0.2514	7E-9				NR [9056863] (imputed)	N
1604	chr6	133571271	133571272	rs519332	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 28)	4,680 European ancestry individuals	3,566 European ancestry individuals	6q23.2		rs519332-A	0.261166522	6E-45				Illumina [7417619] (imputed)	N
1604	chr6	133571381	133571382	rs71574648	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	6q23.2		rs71574648-?	NR	7E-9				NR [~ 8900000] (imputed)	N
1604	chr6	133575047	133575048	rs6903443	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	6q23.2	EYA4	rs6903443-A	0.456977	1E-112		0.0429848	[0.039-0.047] unit increase	NR [13737936] (imputed)	N
1604	chr6	133575874	133575875	rs4895959	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	6q23.2		rs4895959-?	NR	4E-182				NR [~ 8900000] (imputed)	N
1604	chr6	133575874	133575875	rs4895959	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6q23.2		rs4895959-?	NR	8E-190		0.0588105	[0.055-0.063] unit increase	Affymetrix [20259828] (imputed)	N
1604	chr6	133587742	133587743	rs211440	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q23.2	NR	rs211440-G	0.195939	6E-10				Affymetrix, Illumina [23114412] (imputed)	N
1604	chr6	133589582	133589583	rs3777799	33685280	Nishizawa D	2021-01-01	Mol Pain	Genome-wide association study identifies candidate loci associated with chronic pain and postherpetic neuralgia.	Chronic pain	191 Japanese ancestry cases, 282 Japanese ancestry controls	NA	6q23.2	EYA4	rs3777799-?	NR	3E-6	(recessive model)		NR	Illumina [445723]	N
1604	chr6	133590930	133590930	rs149692566	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6q23.2	EYA4	rs149692566-GAT	NR	3E-10		0.0295484	[0.02-0.039] unit decrease	Affymetrix [319769] (imputed)	N
1604	chr6	133590930	133590930	rs149692566	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6q23.2	EYA4	rs149692566-GAT	NR	5E-10		0.029176	[0.02-0.038] unit decrease	Affymetrix [319769] (imputed)	N
1604	chr6	133590930	133590930	rs149692566	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	6q23.2	EYA4	rs149692566-GAT	NR	2E-15		0.0386991	[0.029-0.048] unit increase	Affymetrix [321788] (imputed)	N
1604	chr6	133590930	133590930	rs149692566	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6q23.2	EYA4	rs149692566-GAT	NR	4E-11		0.0310466	[0.022-0.04] unit increase	Affymetrix [321016] (imputed)	N
1604	chr6	133592682	133592683	rs505227	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6q23.2	EYA4	rs505227-T	NR	5E-10		0.0192147	[0.013-0.025] unit decrease	Affymetrix [321016] (imputed)	N
1604	chr6	133598238	133598239	rs11154720	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6q23.2	NR	rs11154720-?	NR	4E-10				Affymetrix [~ 8270000] (imputed)	N
1604	chr6	133601844	133601845	rs6940715	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	6q23.2	NR	rs6940715-A	0.8944	6E-14		0.0222	[0.016-0.028] unit increase	NR [~ 27400000] (imputed)	N
1604	chr6	133603742	133603742	rs761390078	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6q23.2		rs761390078-?	NR	1E-78		0.0468823	[0.042-0.052] unit increase	Affymetrix [20259828] (imputed)	N
1604	chr6	133608667	133608668	rs454953	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	6q23.2	NR	rs454953-?	NR	4E-6	(AA)	0.2799	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1604	chr6	133610749	133610750	rs211433	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	6q23.2		rs211433-G	NR	3E-8		0.012	[0.0077-0.0163] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
1604	chr6	133610749	133610750	rs211433	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6q23.2	EYA4	rs211433-G	0.345159	5E-10		0.014383227	[0.0099-0.0189] unit increase	Affymetrix [93095623] (imputed)	N
1604	chr6	133610749	133610750	rs211433	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	6q23.2	EYA4	rs211433-G	0.345132	5E-10		0.014402011	[0.0099-0.0189] unit increase	Affymetrix [93095623] (imputed)	N
1604	chr6	133613407	133613408	rs211437	30420678	Tasa T	2018-11-12	Eur J Hum Genet	Genetic variation in the Estonian population: pharmacogenomics study of adverse drug effects using electronic health records.	Adverse response to drug	16,226 European ancestry individuals	NA	6q23.2	EYA4	rs211437-C	0.017	8E-7	(Selective serotonin reuptake inhibitors [N06AB])	3.79		Illumina [16500000] (imputed)	N
1604	chr6	133615646	133615646	rs5880172	29459680	Claes P	2018-02-19	Nat Genet	Genome-wide mapping of global-to-local genetic effects on human facial shape.	Facial morphology traits (63 three-dimensional facial segments)	2,329 European ancestry individuals	1,719 European ancestry individuals	6q23.2	RPS12, EYA4	rs5880172-?	NR	6E-12	(facial module 30)			Illumina [9478608] (imputed)	N
1604	chr6	133623693	133623694	rs6924144	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	6q23.2	EYA4	rs6924144-T	0.7735	1E-14		0.0174	[0.013-0.022] unit decrease	Affymetrix [18391927] (imputed)	N
1604	chr6	133631457	133631458	rs77522425	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	6q23.2	EYA4	rs77522425-G	NR	4E-8		0.0610492	[0.039-0.083] unit decrease	Affymetrix [321788] (imputed)	N
1604	chr6	133637939	133637940	rs12525309	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6q23.2		rs12525309-?	NR	2E-20				NR [~ 8900000] (imputed)	N
1604	chr6	133658100	133658100	rs200266058	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 86)	19,670 European ancestry individuals	NA	6q23.2		rs200266058-?	NR	1E-8				NR [9705931] (imputed)	N
1604	chr6	133663588	133663589	rs11753937	22566498	Turner ST	2012-05-07	Hypertension	Genomic association analysis identifies multiple loci influencing antihypertensive response to an angiotensin II receptor blocker.	Response to angiotensin II receptor blocker therapy	198 European ancestry hypertensive individuals, 193 African American hypertensive individuals	NA	6q23.2	EYA4	rs11753937-T	NR	6E-6	(EA)	1.12	[0.61-1.63] unit increase	Affymetrix [~ 2300000] (imputed)	N
1604	chr6	133666903	133666904	rs377962	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6q23.2	EYA4	rs377962-C	NR	2E-8		0.0183819	[0.012-0.025] unit decrease	Affymetrix [323123] (imputed)	N
1605	chr6	133703324	133703325	rs2235485	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	6q23.2	EYA4	rs2235485-A	0.836764	3E-13		0.018176	[0.013-0.023] unit increase	NR [13737936] (imputed)	N
1605	chr6	133703324	133703325	rs2235485	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6q23.2		rs2235485-?	NR	3E-22		0.0264314	[0.021-0.032] unit increase	Affymetrix [20259828] (imputed)	N
1605	chr6	133704148	133704149	rs17062407	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	6q23.2	Intergenic	rs17062407-A	NR	2E-7	(between families)	5.2	unit increase	Affymetrix [up to 15107142] (imputed)	N
1605	chr6	133704825	133704826	rs17062411	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	6q23.2		rs17062411-?	NR	3E-21				NR [~ 8900000] (imputed)	N
1605	chr6	133705747	133705748	rs159411	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	6q23.2		rs159411-?	NR	9E-9				NR [~ 8900000] (imputed)	N
1605	chr6	133713213	133713214	rs3777808	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6q23.2	TCF21	rs3777808-?	NR	5E-7	(creatinine)	0.5263731	[0.32-0.73] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1605	chr6	133737195	133737196	rs211590	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6q23.2	EYA4	rs211590-A	NR	3E-10		0.0195219	[0.013-0.026] unit increase	Affymetrix [323123] (imputed)	N
1605	chr6	133789727	133789728	rs9493627	34108613	Ivarsdottir EV	2021-06-09	Commun Biol	The genetic architecture of age-related hearing impairment revealed by genome-wide association analysis.	Age-related hearing impairment	121,934 European ancestry cases, 591,699 European ancestry controls	NA	6q23.2	EYA4	rs9493627-A	32.59	1E-17	(additive)	1.05	[NR]	Affymetrix, Illumina [46900000] (imputed)	N
1605	chr6	133789727	133789728	rs9493627	32986727	Kalra G	2020-09-28	PLoS Genet	Biological insights from multi-omic analysis of 31 genomic risk loci for adult hearing difficulty.	Age-related hearing impairment (MTAG)	330,759 European ancestry individuals	NA	6q23.2		rs9493627-?	NR	8E-10		6.151866	z score increase	Affymetrix [NR] (imputed)	N
1605	chr6	133790250	133790251	rs212765	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	6q23.2		rs212765-?	NR	2E-40				NR [~ 8900000] (imputed)	N
1605	chr6	133796585	133796586	rs3777866	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	6q23.2	EYA4	rs3777866-T	NR	4E-10		0.0215056	[0.015-0.028] unit increase	Affymetrix [323858] (imputed)	N
1605	chr6	133796585	133796586	rs3777866	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6q23.2	EYA4	rs3777866-T	NR	5E-14		0.0246819	[0.018-0.031] unit increase	Affymetrix [323123] (imputed)	N
1605	chr6	133797207	133797208	rs9373056	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Creatinine levels	110,051 European ancestry individuals	NA	6q23.2		rs9373056-C	0.679446	2E-10		0.0242181	[0.017-0.032] unit increase	NR [11722792] (imputed)	N
1605	chr6	133799586	133799586	rs140582693	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	6q23.2		rs140582693-AAT	NR	2E-8		0.014	[0.0091-0.0189] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
1605	chr6	133799586	133799586	rs140582693	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	6q23.2	AK093513	rs140582693-A	0.593	3E-11		0.0022	[0.0016-0.0028] unit increase	Affymetrix [NR] (imputed)	N
1605	chr6	133803010	133803011	rs212772	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	6q23.2	EYA4	rs212772-C	0.542493	8E-33		0.0221934	[0.019-0.026] unit decrease	NR [13737936] (imputed)	N
1605	chr6	133812021	133812022	rs547545	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	6q23.2		rs547545-A	NR	2E-15		0.0132	[0.0099-0.0165] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
1605	chr6	133812021	133812022	rs547545	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6q23.2		rs547545-?	NR	2E-53		0.0308547	[0.027-0.035] unit decrease	Affymetrix [20259828] (imputed)	N
1605	chr6	133812021	133812022	rs547545	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	6q23.2	EYA4	rs547545-T	0.543264	2E-12	(women)	0.0315908	[0.023-0.041] unit decrease	NR [17166351] (imputed)	N
1605	chr6	133812021	133812022	rs547545	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	6q23.2	EYA4	rs547545-T	0.54187	2E-24		0.0338444	[0.027-0.04] unit decrease	NR [17166351] (imputed)	N
1605	chr6	133812021	133812022	rs547545	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	6q23.2	EYA4	rs547545-T	0.540274	2E-14	(men)	0.0384047	[0.028-0.049] unit decrease	NR [17166351] (imputed)	N
1605	chr6	133812021	133812022	rs547545	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference	1,254 whole genome sequenced European ancestry individuals, 3,074 whole genome sequenced individuals, 29,716 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 701 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,050 Mylopotamos (founder/genetic isolate) individuals, 883 Pomak (founder/genetic isolate) individuals	205,909 European ancestry individuals	6q23.2	EYA4	rs547545-A	0.4523	7E-6		0.0372	[0.021-0.053] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1605	chr6	133812871	133812872	rs7764488	28452372	Gorski M	2017-04-28	Sci Rep	1000 Genomes-based meta-analysis identifies 10 novel loci for kidney function.	Glomerular filtration rate (creatinine)	110,517 European ancestry individuals		6q23.2	EYA4	rs7764488-A	0.32	4E-9		0.0061	[0.0039-0.0083] unit increase	Affymetrix, Illumina [up to 10971307] (imputed)	N
1605	chr6	133815464	133815465	rs9389081	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Snoring	359,916 European ancestry individuals	NA	6q23.2	NR	rs9389081-T	0.9236	4E-8		1.0526316	[1.03-1.07]	Affymetrix, Illumina [10862568] (imputed)	N
1605	chr6	133816187	133816188	rs667890	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	6q23.2		rs667890-C	NR	1E-12		0.0143	[0.01-0.018] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
1605	chr6	133816187	133816188	rs667890	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6q23.2	EYA4	rs667890-C	NR	5E-9		0.0179615	[0.012-0.024] unit decrease	Affymetrix [323123] (imputed)	N
1605	chr6	133816604	133816623	rs148389913	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	6q23.2	EYA4	rs148389913-?	NR	2E-9		0.0159	[0.011-0.021] unit increase	Affymetrix [5701386] (imputed)	N
1605	chr6	133816623	133816623	rs142398992	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	6q23.2		rs142398992-TACTCATTTATTTATA	NR	2E-9		0.0139	[0.0094-0.0184] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
1605	chr6	133816623	133816623	rs142398992	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	6q23.2	EYA4	rs142398992-T	0.5618	4E-7		0.0422	[0.026-0.059] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1606	chr6	133827353	133827354	rs2277083	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	6q23.2	EYA4	rs2277083-A	0.441182	2E-14		0.0152894	[0.011-0.019] unit increase	Affymetrix [NR] (imputed)	N
1606	chr6	133836187	133836188	rs11154730	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6q23.2	EYA4, RP3-323P13.2	rs11154730-T	NR	4E-8		0.0181075	[0.012-0.025] unit increase	Affymetrix [321016] (imputed)	N
1606	chr6	133837860	133837860	rs528018446	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6q23.2	EYA4, RP3-323P13.2	rs528018446-CAA	NR	5E-8		0.0233765	[0.015-0.032] unit increase	Affymetrix [323123] (imputed)	N
1606	chr6	133847685	133847686	rs17643040	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	6q23.2	NR	rs17643040-C	NR	3E-9		0.0199	[0.013-0.027] unit increase	Affymetrix [9000000] (imputed)	N
1606	chr6	133847685	133847686	rs17643040	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	6q23.2	NR	rs17643040-C	NR	6E-10		0.0208	[0.014-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
1606	chr6	133849788	133849789	rs3822939	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6q23.2	EYA4, RP3-323P13.2	rs3822939-A	NR	1E-8		0.0161364	[0.011-0.022] unit decrease	Affymetrix [321016] (imputed)	N
1606	chr6	133849788	133849789	rs3822939	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	6q23.2	EYA4	rs3822939-A	0.4222	5E-23		0.0025	[0.0019-0.0031] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
1606	chr6	133849788	133849789	rs3822939	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	6q23.2	EYA4	rs3822939-A	0.4593	8E-22		0.0028	[0.0022-0.0034] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
1606	chr6	133849788	133849789	rs3822939	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	6q23.2	EYA4	rs3822939-G	0.6677	7E-10		6.169	NR z score increase	Illumina [26237160] (imputed)	N
1606	chr6	133849788	133849789	rs3822939	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6q23.2		rs3822939-?	NR	1E-49		0.0294909	[0.025-0.034] unit increase	Affymetrix [20259828] (imputed)	N
1606	chr6	133856756	133856757	rs9385650	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6q23.2		rs9385650-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1606	chr6	133860344	133860345	rs9402515	18464913	Melzer D	2008-05-09	PLoS Genet	A genome-wide association study identifies protein quantitative trait loci (pQTLs).	Protein quantitative trait loci	1,200 European ancestry individuals	up to 4,590 European ancestry individuals	6q23.2	EYA4	rs9402515-?	0.09	1E-6	(Alpha-2 macroglobulin)			Illumina [496032]	N
1606	chr6	133864249	133864250	rs4895970	27016271	Kornilov SA	2016-03-25	Pediatrics	Genome-Wide Association and Exome Sequencing Study of Language Disorder in an Isolated Population.	Developmental language disorder (linguistic errors)	149 isolated population cases, 210 isolated population controls	NA	6q23.2	NR	rs4895970-?	0.497	5E-6	(Phonetic/prosodic)	0.355	[0.2-0.51] unit increase	Illumina [223580]	N
1606	chr6	133867771	133867772	rs9321405	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6q23.2	RP3-323P13.2	rs9321405-C	NR	4E-8		0.0156568	[0.01-0.021] unit decrease	Affymetrix [321016] (imputed)	N
1606	chr6	133867801	133867802	rs9375969	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral fat	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	6q23.2	EYA4	rs9375969-G	0.76	9E-6	(men)			Affymetrix, Illumina [2500000] (imputed)	N
1606	chr6	133869759	133869760	rs17716179	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	6q23.2		rs17716179-?	NR	2E-13				NR [~ 8900000] (imputed)	N
1606	chr6	133934828	133934829	rs2677829	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	6q23.2	NR	rs2677829-A	0.61	2E-10		0.0118	[0.0081-0.0155] unit increase	NR [NR]	N
1606	chr6	133935727	133935728	rs2636590	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	6q23.2		rs2636590-A	NR	2E-9		0.011	[0.0075-0.0145] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
1607	chr6	133961913	133961915	rs56261514	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	6q23.2	RP3-323P13.2	rs56261514-C	0.689912	1E-9		0.014584447	[0.0099-0.0193] unit increase	Affymetrix [93095623] (imputed)	N
1607	chr6	133961924	133961926	rs148699819	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	6q23.2		rs148699819-C	NR	2E-8		0.012	[0.0079-0.0161] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
1607	chr6	133996535	133996536	rs12194247	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	6q23.2	TARID	rs12194247-T	0.1797	5E-10		0.3776	[0.26-0.5] mmHg decrease	Affymetrix [NR] (imputed)	N
1607	chr6	133999751	133999752	rs6918911	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls, 22,356 East Asian ancestry cases, 156,370 East Asian ancestry controls	NA	6q23.2		rs6918911-T	NR	2E-10		0.1005	[0.07-0.131] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1607	chr6	133999867	133999868	rs6919211	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	6q23.2	EYA4-AS1	rs6919211-C	0.818	2E-7		0.042	[0.026-0.058] unit decrease	Affymetrix [7947838] (imputed)	N
1607	chr6	134062450	134062451	rs74379084	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	6q23.2	NR	rs74379084-C	NR	4E-9		0.0426	[0.028-0.057] unit decrease	Affymetrix [9000000] (imputed)	N
1607	chr6	134062450	134062451	rs74379084	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	6q23.2	NR	rs74379084-C	NR	1E-9		0.0443	[0.03-0.059] unit increase	Affymetrix [9000000] (imputed)	N
1607	chr6	134069784	134069785	rs12196724	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	6q23.2		rs12196724-?	NR	4E-11				NR [~ 8900000] (imputed)	N
1607	chr6	134080854	134080855	rs76987554	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption interaction (2df test)	63,608 European ancestry drinkers, 10,193 African American or Afro-Caribbean heavy drinkers,  2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,494 European ancestry non-drinkers, 11,224 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,002 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,452 Hispanic drinkers, 43,316 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,945 Asian ancestry non-drinkers, 6,925 Hispanic non-drinkers	6q23.2	TARID, MGC34034, SGK1	rs76987554-T	0.09	2E-9	(AA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1607	chr6	134080854	134080855	rs76987554	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	6q23.2	TARID, SLC2A12	rs76987554-?	NR	3E-8	(African)			Affymetrix, Illumina [18800000] (imputed)	N
1607	chr6	134080854	134080855	rs76987554	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	6q23.2	TARID, SLC2A12	rs76987554-?	NR	2E-8				Affymetrix, Illumina [18800000] (imputed)	N
1607	chr6	134080854	134080855	rs76987554	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	6q23.2	TARID, SLC2A12	rs76987554-?		7E-8	(African)			Affymetrix, Illumina [18800000] (imputed)	N
1607	chr6	134080854	134080855	rs76987554	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	6q23.2	TARID, SLC2A12	rs76987554-?		1E-7				Affymetrix, Illumina [18800000] (imputed)	N
1607	chr6	134080854	134080855	rs76987554	28498854	Liang J	2017-05-12	PLoS Genet	Single-trait and multi-trait genome-wide association analyses identify novel loci for blood pressure in African-ancestry populations.	Systolic blood pressure	Up to 31,155 African individuals	Up to 4,187 African individuals, up to 14,016 Korean ancestry individuals, up to 23,914 European ancestry individuals, up to 12,278 Hispanic individuals	6q23.2	TARID, TCF21	rs76987554-C	NR	3E-10		1.6894	[1.17-2.21] unit decrease	Affymetrix, Illumina [at least 30072738] (imputed)	N
1607	chr6	134080854	134080855	rs76987554	28498854	Liang J	2017-05-12	PLoS Genet	Single-trait and multi-trait genome-wide association analyses identify novel loci for blood pressure in African-ancestry populations.	Pulse pressure	Up to 31,155 African individuals	Up to 4,187 African individuals, up to 14,016 Korean ancestry individuals, up to 23,914 European ancestry individuals, up to 12,278 Hispanic individuals	6q23.2	TARiD, TCF21	rs76987554-C	NR	7E-6		0.8598	[0.48-1.24] unit decrease	Affymetrix, Illumina [at least 30072738] (imputed)	N
1607	chr6	134080854	134080855	rs76987554	28498854	Liang J	2017-05-12	PLoS Genet	Single-trait and multi-trait genome-wide association analyses identify novel loci for blood pressure in African-ancestry populations.	Diastolic blood pressure	Up to 31,155 African individuals	Up to 4,187 African individuals, up to 14,016 Korean ancestry individuals, up to 23,914 European ancestry individuals, up to 12,278 Hispanic individuals	6q23.2	TARID, TCF21	rs76987554-C	NR	2E-6		0.7833	[0.46-1.10] unit decrease	Affymetrix, Illumina [at least 30072738] (imputed)	N
1607	chr6	134080854	134080855	rs76987554	28498854	Liang J	2017-05-12	PLoS Genet	Single-trait and multi-trait genome-wide association analyses identify novel loci for blood pressure in African-ancestry populations.	Blood pressure traits (multi-trait analysis)	Up to 31,155 African individuals	Up to 4,187 African individuals, up to 14,016 Korean ancestry individuals, up to 23,914 European ancestry individuals, up to 12,278 Hispanic individuals	6q23.2	TARID, TCF21	rs76987554-C	NR	9E-7	(Hom)			Affymetrix, Illumina [at least 30072738] (imputed)	N
1607	chr6	134080854	134080855	rs76987554	28498854	Liang J	2017-05-12	PLoS Genet	Single-trait and multi-trait genome-wide association analyses identify novel loci for blood pressure in African-ancestry populations.	Blood pressure traits (multi-trait analysis)	Up to 31,155 African individuals	Up to 4,187 African individuals, up to 14,016 Korean ancestry individuals, up to 23,914 European ancestry individuals, up to 12,278 Hispanic individuals	6q23.2	TARID, TCF21	rs76987554-C	NR	1E-7	(Het)			Affymetrix, Illumina [at least 30072738] (imputed)	N
1608	chr6	134095680	134095681	rs1209413	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	6q23.2		rs1209413-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1608	chr6	134103249	134103250	rs12193307	32469254	Matsunaga H	2020-05-29	Circ Genom Precis Med	Transethnic Meta-analysis of Genome-wide Association Studies Identifies Three New Loci and Characterizes Population-specific Differences for Coronary Artery Disease.	Coronary artery disease	15,302 Japanese ancestry cases, 76,014 European and East Asian ancestry cases, 36,140 Japanese ancestry controls, 264,785 European and East Asian ancestry controls	NA	6q23.2	TARID	rs12193307-A	0.66	2E-10		1.05	[1.04-1.07]	Illumina [5167567] (imputed)	N
1608	chr6	134158799	134158800	rs1208285	22306654	Feenstra B	2012-02-05	Nat Genet	Common variants near MBNL1 and NKX2-5 are associated with infantile hypertrophic pyloric stenosis.	Infantile hypertrophic pyloric stenosis	1,001 European ancestry cases, 2,401 European ancestry controls	796 European ancestry cases, 876 European ancestry controls	6q23.2	NR	rs1208285-C	0.39	6E-7		1.25	[1.14-1.36]	Illumina [523420]	N
1608	chr6	134159621	134159622	rs1966248	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 2,680 cases, 380,970 European ancestry controls, 73,242 controls	NA	6q23.2	TARID	rs1966248-A	0.690619	3E-14		1.09	[1.07-1.12]	NR [10903881] (imputed)	N
1608	chr6	134159621	134159622	rs1966248	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	6q23.2	EYA4-AS1, LINC01312	rs1966248-A	0.687	3E-28		0.076	[0.062-0.09] unit increase	Affymetrix [7947838] (imputed)	N
1608	chr6	134160893	134160894	rs9493740	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	6q23.2	EYA4-AS1, LINC01312	rs9493740-T	0.0255	2E-7		0.1197	[0.075-0.164] unit increase	NR [8041861] (imputed)	N
1608	chr6	134171478	134171479	rs1029212	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	6q23.2	RP4-662A9.2, RP3-323P13.2	rs1029212-G	0.468878	4E-11		0.014574778	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
1608	chr6	134171478	134171479	rs1029212	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q23.2	NR	rs1029212-G	0.478479	2E-15				Affymetrix, Illumina [24558453] (imputed)	N
1608	chr6	134171478	134171479	rs1029212	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	6q23.2	NR	rs1029212-G	0.46838	1E-16		0.015383	[0.012-0.019] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
1608	chr6	134173150	134173151	rs12202017	28714975	Nelson CP	2017-07-17	Nat Genet	Association analyses based on false discovery rate implicate new loci for coronary artery disease.	Coronary artery disease (myocardial infarction, percutaneous transluminal coronary angioplasty, coronary artery bypass grafting, angina or chromic ischemic heart disease)	18,467 European and unknown ancestry cases, 45,264 European and unknown ancestry controls	57,347 European and unknown ancestry cases, 219,521 European and unknown ancestry controls	6q23.2	TCF21	rs12202017-A	0.702	6E-14		1.07	[1.05-1.09]	Affymetrix [9149595] (imputed)	N
1608	chr6	134173150	134173151	rs12202017	26343387	Nikpay M	2015-09-07	Nat Genet	A comprehensive 1,000 Genomes-based genome-wide association meta-analysis of coronary artery disease.	Coronary artery disease	42,096 European ancestry cases, 361 African American cases, 758 Hispanic American cases, 12,658 South Asian ancestry cases, 1,802 Lebanese ancestry cases, 3,614 East Asian ancestry cases, 99,121 European ancestry controls, 2,778 African American controls, 3,337 Hispanic American controls, 12,899 South Asian ancestry controls, 466 Lebanese ancestry controls, 7,709 East Asian ancestry controls	NA	6q23.2	TCF21	rs12202017-A	0.699953	2E-11		1.07	[1.05- 1.09]	Affymetrix, Illumina [8600000] (imputed)	N
1608	chr6	134176627	134176628	rs184241568	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	6q23.2	BC041459	rs184241568-G	0.998	3E-6	(AA)	1.266	NR unit increase	Illumina [NR] (imputed)	N
1608	chr6	134179580	134179581	rs9399078	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	6q23.2	NR	rs9399078-T	0.375953	2E-12		0.013826	[0.01-0.0177] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1608	chr6	134184971	134184972	rs2105092	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls	NA	6q23.2	RP4-662A9.2	rs2105092-A	0.290392	2E-10		0.057990488	[0.04-0.076] unit decrease	Affymetrix [7288503] (imputed)	N
1608	chr6	134184971	134184972	rs2105092	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	6q23.2	RP4-662A9.2	rs2105092-A	0.28919	9E-11		0.043208886	[0.03-0.056] unit decrease	Affymetrix [7288503] (imputed)	N
1608	chr6	134184971	134184972	rs2105092	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	6q23.2		rs2105092-?	NR	5E-14				NR [~ 8900000] (imputed)	N
1608	chr6	134193467	134193468	rs147990222	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	6q23.2	BC041459	rs147990222-C	0.999	3E-6	(AA)	1.632	NR unit increase	Illumina [NR] (imputed)	N
1608	chr6	134196673	134196674	rs12524865	22751097	Lu X	2012-07-01	Nat Genet	Genome-wide association study in Han Chinese identifies four new susceptibility loci for coronary artery disease.	Coronary heart disease	1,515 Han Chinese ancestry cases, 5,019 Han Chinese ancestry controls	15,460 Han Chinese ancestry cases, 11,472 Han Chinese ancestry controls	6q23.2	TCF21	rs12524865-C	0.61	2E-7		1.11	[1.06-1.16]	Affymetrix [~ 2200000] (imputed)	N
1608	chr6	134202689	134202690	rs2327426	33888516	Zheng T	2021-04-22	Gut	Genome-wide analysis of 944 133 individuals provides insights into the etiology of haemorrhoidal disease.	Haemorrhoidal disease	218,920 European ancestry cases, 725,213 European ancestry controls	NA	6q23.2	TCF21	rs2327426-?	0.29490000000000005	3E-9		0.97	[0.97-0.98]	Affymetrix, Illumina [8494288] (imputed)	N
1608	chr6	134202689	134202690	rs2327426	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	6q23.2	TARID	rs2327426-T	0.69726	3E-20		1.08	[1.06-1.09]	NR [8126035] (imputed)	N
1608	chr6	134203009	134203010	rs6934010	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q23.2	NR	rs6934010-T	0.393343	5E-13				Affymetrix, Illumina [24332387] (imputed)	N
1608	chr6	134203009	134203010	rs6934010	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q23.2	NR	rs6934010-T	0.392487	3E-13				Affymetrix, Illumina [24653286] (imputed)	N
1608	chr6	134204246	134204247	rs12194592	30104761	Zhou W	2018-08-13	Nat Genet	Efficiently controlling for case-control imbalance and sample relatedness in large-scale genetic association studies.	Coronary artery disease	31,355 European ancestry cases, 377,103 European ancestry controls	NA	6q23.2	TARID	rs12194592-G	0.307	2E-10				Affymetrix [28000000] (imputed)	N
1608	chr6	134205091	134205092	rs969282	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	6q23.2	RP3-323P13.2	rs969282-A	0.545315	5E-9		0.012731489	[0.0085-0.017] unit increase	Affymetrix [93095623] (imputed)	N
1608	chr6	134206970	134206971	rs6569914	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	6q23.2		rs6569914-?	NR	5E-12				NR [~ 8900000] (imputed)	N
1608	chr6	134209836	134209837	rs2327429	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Stable angina pectoris	18,833 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	6q23.2		rs2327429-C	0.521873164	6E-16		0.09574601	[0.073-0.119] unit decrease	Illumina [13427711] (imputed)	N
1608	chr6	134209836	134209837	rs2327429	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Stable angina pectoris	17,894 European ancestry cases, 325,132 European ancestry controls, 18,833 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	6q23.2		rs2327429-C	NR	1E-19		0.0787	[0.062-0.096] unit decrease	Affymetrix, Illumina [20456336] (imputed)	N
1608	chr6	134209836	134209837	rs2327429	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls, 20,367 East Asian ancestry cases, 158,359 East Asian ancestry controls	NA	6q23.2		rs2327429-C	NR	1E-9		0.0427	[0.029-0.056] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1608	chr6	134209836	134209837	rs2327429	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	6q23.2		rs2327429-C	NR	1E-10		0.0334	[0.023-0.044] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1608	chr6	134209836	134209837	rs2327429	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Angina pectoris	30,025 European ancestry cases, 440,906 European ancestry controls, 14,007 East Asian ancestry cases, 145,158 East Asian ancestry controls	NA	6q23.2		rs2327429-C	NR	8E-17		0.0696	[0.053-0.086] unit decrease	Affymetrix, Illumina [25842036] (imputed)	N
1608	chr6	134209836	134209837	rs2327429	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Angina pectoris	14,007 East Asian ancestry cases, 145,158 East Asian ancestry controls	NA	6q23.2		rs2327429-C	0.521935368	1E-13		0.09821447	[0.072-0.124] unit decrease	Illumina [13426705] (imputed)	N
1608	chr6	134209836	134209837	rs2327429	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	6q23.2	TARID	rs2327429-?	NR	2E-45		0.0737999	[0.064-0.084] unit decrease	Illumina [4804024] (imputed)	N
1608	chr6	134209836	134209837	rs2327429	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 142,336 Japanese ancestry controls	NA	6q23.2	TARID	rs2327429-?	NR	3E-22		0.0957435	[0.076-0.115] unit decrease	Illumina [19707525] (imputed)	N
1608	chr6	134209836	134209837	rs2327429	32469254	Matsunaga H	2020-05-29	Circ Genom Precis Med	Transethnic Meta-analysis of Genome-wide Association Studies Identifies Three New Loci and Characterizes Population-specific Differences for Coronary Artery Disease.	Coronary artery disease	15,302 Japanese ancestry cases, 36,140 Japanese ancestry controls	NA	6q23.2	TCF21	rs2327429-T	0.48	1E-12		1.14	[1.10-1.18]	Illumina [5932413] (imputed)	N
1608	chr6	134209836	134209837	rs2327429	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	6q23.2		rs2327429-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1608	chr6	134209836	134209837	rs2327429	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	6q23.2	EYA4-AS1, TCF21	rs2327429-T	0.695	4E-31		0.0655	[0.055-0.076] unit increase	Affymetrix [at least 7947838] (imputed)	N
1608	chr6	134209836	134209837	rs2327429	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	6q23.2	EYA4-AS1, TCF21	rs2327429-T	0.693	3E-31		0.0723	[0.06-0.084] unit increase	NR [8041861] (imputed)	N
1608	chr6	134214524	134214525	rs12190287	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	20,917 European ancestry cases, 440,906 European ancestry controls, 14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	6q23.2		rs12190287-G	NR	3E-25		0.0917	[0.074-0.109] unit decrease	Affymetrix, Illumina [25841367] (imputed)	N
1608	chr6	134214524	134214525	rs12190287	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	6q23.2		rs12190287-G	0.424482407	4E-15		0.107477106	[0.081-0.134] unit decrease	Illumina [13427135] (imputed)	N
1608	chr6	134214524	134214525	rs12190287	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (vasodilators used in cardiac diseases)	5,546 European ancestry cases, 237,113 European ancestry controls, 17,050 East Asian ancestry cases, 161,676 East Asian ancestry controls	NA	6q23.2		rs12190287-G	NR	1E-15		0.0835	[0.063-0.104] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1608	chr6	134214524	134214525	rs12190287	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (vasodilators used in cardiac diseases)	17,050 East Asian ancestry cases, 161,676 East Asian ancestry controls	NA	6q23.2		rs12190287-G	0.420522849	4E-15		0.09651837	[0.072-0.121] unit decrease	Illumina [13429980] (imputed)	N
1608	chr6	134214524	134214525	rs12190287	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	6q23.2	NR	rs12190287-G	NR	4E-13		0.0179	[0.013-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
1608	chr6	134214524	134214525	rs12190287	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	6q23.2	NR	rs12190287-G	NR	2E-13		0.0182	[0.013-0.023] unit increase	Affymetrix [9000000] (imputed)	N
1608	chr6	134214524	134214525	rs12190287	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	6q23.2	TCF21	rs12190287-G	0.37	3E-10		0.43	[0.29-0.57] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1608	chr6	134214524	134214525	rs12190287	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	6q23.2	TCF21	rs12190287-G	0.3742	2E-8		0.3925	[0.26-0.53] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1608	chr6	134214524	134214525	rs12190287	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls	NA	6q23.2	TCF21	rs12190287-G	0.374524	4E-11		0.053729374	[0.038-0.07] unit decrease	Affymetrix [7288503] (imputed)	N
1608	chr6	134214524	134214525	rs12190287	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	6q23.2		rs12190287-?	NR	2E-12				NR [~ 8900000] (imputed)	N
1608	chr6	134214524	134214525	rs12190287	24262325	Dichgans M	2013-11-21	Stroke	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Coronary artery disease or large artery stroke	2,167 Large artery stroke cases, 22,233 Coronary artery disease cases, ~ 75,921 controls	NA	6q23.2	TCF21	rs12190287-?		2E-8				Affymetrix, Illumina [up to 2500000] (imputed)	N
1608	chr6	134214524	134214525	rs12190287	24262325	Dichgans M	2013-11-21	Stroke	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Coronary artery disease or ischemic stroke	12,389 Ischemic stroke cases, 22,233 Coronary artery disease cases, ~ 88,766 controls	NA	6q23.2	TCF21	rs12190287-?		2E-8				Affymetrix, Illumina [up to 2500000] (imputed)	N
1608	chr6	134214524	134214525	rs12190287	24262325	Dichgans M	2013-11-21	Stroke	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Coronary artery disease	33,398 cases, 75,726 controls	NA	6q23.2	TCF21	rs12190287-?	NR	2E-9		1.1111	[1.08-1.15]	Illumina [575000] (imputed)	N
1608	chr6	134214524	134214525	rs12190287	21378990	Schunkert H	2011-03-06	Nat Genet	Large-scale association analysis identifies 13 new susceptibility loci for coronary artery disease.	Coronary heart disease	22,233 European ancestry cases, 64,762 European ancestry controls	56,682 European ancestry cases and controls	6q23.2	TCF21	rs12190287-C	0.62	1E-12		1.08	[1.06-1.10]	Affymetrix, Illumina [~ 2300000] (imputed)	N
1609	chr6	134226146	134226147	rs162185	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls, 49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	6q23.2		rs162185-C	NR	2E-10		0.0374	[0.026-0.049] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1609	chr6	134226146	134226147	rs162185	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	6q23.2		rs162185-C	NR	3E-11		0.0129	[0.0092-0.0166] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
1609	chr6	134226146	134226147	rs162185	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	6q23.2	TCF21	rs162185-T	0.5534	3E-8		0.0041	[0.0027-0.0055] unit decrease	Affymetrix, Illumina [8176554] (imputed)	N
1609	chr6	134226146	134226147	rs162185	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls	NA	6q23.2	TCF21	rs162185-C	0.409998	4E-10		0.051430378	[0.035-0.068] unit decrease	Affymetrix [7288503] (imputed)	N
1609	chr6	134230895	134230896	rs151108	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	6q23.2		rs151108-G	NR	4E-9		0.0131	[0.0088-0.0174] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
1609	chr6	134234092	134234093	rs13201465	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	6q23.2	TCF21, TBPL1, SLC2A12, HMGA1P7	rs13201465-G	NR	1E-6	(wake after sleep onset)	0.2212	[0.13-0.31] unit increase	Affymetrix [7141204] (imputed)	N
1609	chr6	134234786	134234787	rs229925	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	6q23.2	NR	rs229925-G	0.757637	1E-14		0.016604	[0.012-0.021] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
1609	chr6	134241796	134241797	rs229932	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	6q23.2		rs229932-T	0.767683	3E-11		0.017773872	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1609	chr6	134246332	134246333	rs750862004	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6q23.2	TBPL1	rs750862004-T	0.0024	6E-6		1.5753	[0.89-2.26] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1609	chr6	134259398	134259399	rs380825	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	6q23.2	NR	rs380825-A	0.523397	3E-8		0.0113413	[0.0073-0.0153] unit increase	NR [NR]	N
1609	chr6	134285134	134285135	rs2327436	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	6q23.2		rs2327436-?	NR	9E-13				NR [~ 8900000] (imputed)	N
1609	chr6	134292717	134292723	rs150184171	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	6q23.2	NR	rs150184171-G	NR	8E-10		1.047	[1.03-1.06]	Affymetrix, Illumina [29235255] (imputed)	N
1609	chr6	134339264	134339265	rs2627237	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	6q23.2	SLC2A12	rs2627237-A	0.5893	2E-7		0.0124	[0.0077-0.0171] unit increase	Affymetrix [19819130] (imputed)	N
1609	chr6	134339264	134339265	rs2627237	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	6q23.2	SLC2A12	rs2627237-A	0.5893	4E-9		0.0141	[0.0094-0.0188] unit increase	Affymetrix [19819130] (imputed)	N
1610	chr6	134365042	134365043	rs2254235	31586183	Niazi Y	2019-10-04	Mutagenesis	Distinct pathways associated with chromosomal aberration frequency in a cohort exposed to genotoxic compounds compared to general population.	High chromosomal aberration frequency (chromosome type)	321 European and unknown ancestry genotoxic compound-exposed cases, 286 European and unknown ancestry genotoxic compound-exposed controls, 333 European and unknown ancestry unexposed cases, 533 European and unknown ancestry unexposed controls	NA	6q23.2	SLC2A12	rs2254235-?	NR	2E-6		1.45	[NR]	Illumina [> 2600000] (imputed)	N
1610	chr6	134368952	134368953	rs965652	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	6q23.2	SLC2A12	rs965652-A	0.485	1E-7		0.034	[0.022-0.046] unit increase	Affymetrix [7947838] (imputed)	N
1610	chr6	134369423	134369424	rs2811686	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	6q23.2	SLC2A12	rs2811686-T	0.7463	1E-6		0.0312	[0.019-0.044] unit decrease	NR [8041861] (imputed)	N
1610	chr6	134371408	134371409	rs79734498	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		SLC2A12	rs79734498-?	NR	1E-11		2.20175	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1610	chr6	134394335	134394336	rs9483645	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	6q23.2	NR	rs9483645-?	NR	3E-70				Affymetrix [NR]	N
1610	chr6	134429734	134429735	rs12198966	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	CAG-977 abundance in stool	5,959 Finnish ancestry individuals	NA	6q23.2		rs12198966-A	0.011545	1E-8		0.164852	[0.11-0.22] unit increase	Illumina [7980478] (imputed)	N
1610	chr6	134475748	134475749	rs9321429	28322283	Chibnik LB	2017-03-21	Mol Psychiatry	Susceptibility to neurofibrillary tangles: role of the PTPRD locus and limited pleiotropy with other neuropathologies.	Neuropathologic traits (pleiotropy)	909 European ancestry individuals	369 individuals	6q23.2	NR	rs9321429-C	0.64	6E-6	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1611	chr6	134481964	134481965	rs2758145	28322283	Chibnik LB	2017-03-21	Mol Psychiatry	Susceptibility to neurofibrillary tangles: role of the PTPRD locus and limited pleiotropy with other neuropathologies.	Dementia with Lewy bodies	195 European ancestry cases, 714 European ancestry controls	369 individuals	6q23.2		rs2758145-G	0.81	6E-7	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1611	chr6	134517686	134517687	rs12212449	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	6q23.2	NR	rs12212449-T	NR	4E-32		0.03	[0.025-0.035] unit decrease	Affymetrix [9000000] (imputed)	N
1611	chr6	134518511	134518512	rs1335802	26545240	Giri A	2015-11-06	PLoS One	Genetic Determinants of Pelvic Organ Prolapse among African American and Hispanic Women in the Women's Health Initiative.	Pelvic organ prolapse (moderate/severe)	154 African American cases, 948 African American controls, 163 Hispanic cases, 305 Hispanic controls	NA	6q23.2	SGK1	rs1335802-C	0.58	6E-6	(AA)	1.87		Affymetrix [at least 730985] (imputed)	N
1611	chr6	134518511	134518512	rs1335802	26545240	Giri A	2015-11-06	PLoS One	Genetic Determinants of Pelvic Organ Prolapse among African American and Hispanic Women in the Women's Health Initiative.	Pelvic organ prolapse (moderate/severe)	154 African American cases, 948 African American controls, 163 Hispanic cases, 305 Hispanic controls	NA	6q23.2	SGK1	rs1335802-C	0.58	4E-6		1.61		Affymetrix [at least 730985] (imputed)	N
1611	chr6	134518511	134518512	rs1335802	26545240	Giri A	2015-11-06	PLoS One	Genetic Determinants of Pelvic Organ Prolapse among African American and Hispanic Women in the Women's Health Initiative.	Pelvic organ prolapse	793 African American cases, 948 African American controls, 606 Hispanic cases, 305 Hispanic controls	NA	6q23.2	SGK1	rs1335802-C	0.58	7E-6	(AA)	1.41		Affymetrix [at least 730985] (imputed)	N
1611	chr6	134518511	134518512	rs1335802	26545240	Giri A	2015-11-06	PLoS One	Genetic Determinants of Pelvic Organ Prolapse among African American and Hispanic Women in the Women's Health Initiative.	Pelvic organ prolapse	793 African American cases, 948 African American controls, 606 Hispanic cases, 305 Hispanic controls	NA	6q23.2	SGK1	rs1335802-C	0.58	2E-6		1.34		Affymetrix [at least 730985] (imputed)	N
1611	chr6	134518918	134518919	rs1763519	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	6q23.2		rs1763519-C	NR	2E-36		0.0295	[0.025-0.034] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
1611	chr6	134518918	134518919	rs1763519	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	6q23.2	NR	rs1763519-C	0.6065	3E-29		0.002531	[0.0021-0.003] unit decrease	Affymetrix [NR] (imputed)	N
1611	chr6	134521279	134521280	rs76822083	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6q23.2	NR	rs76822083-C	0.01394	2E-8	(MGMT)	0.008609	NR unit increase	Illumina [1671387] (imputed)	N
1611	chr6	134544732	134544733	rs1763500	23192594	Velez Edwards DR	2012-11-29	Hum Genet	Gene-environment interactions and obesity traits among postmenopausal African-American and Hispanic women in the Women's Health Initiative SHARe Study.	Body mass index  (smoking years interaction)	8,203 African American females, 3,484 Hispanic females	NA	6q23.2	SGK1, LOC442261	rs1763500-C	NR	2E-6		0.26	[NR] unit increase	Affymetrix [706791]	N
1611	chr6	134546684	134546685	rs1009840	25781172	Avramopoulos D	2015-03-17	PLoS One	Infection and inflammation in schizophrenia and bipolar disorder: a genome wide study for interactions with genetic variation.	Schizophrenia (inflammation and infection response interaction)	460 Ashkenazi Jewish schizophrenia cases, 241  Ashkenazi Jewish controls	NA	6q23.2	SGK1, SLC2A12	rs1009840-?		8E-6	(anti-TOXO)			Affymetrix [516638]	N
1611	chr6	134554366	134554367	rs187235695	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6q23.2	NR	rs187235695-A	0.01045	3E-9	(PCCB)	0.3777	NR unit increase	Illumina [1671387] (imputed)	N
1611	chr6	134563352	134563353	rs4896030	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	6q23.2	Intergenic	rs4896030-A	NR	6E-7	(between families)	4.988	unit increase	Affymetrix [up to 15107142] (imputed)	N
1611	chr6	134574431	134574431	rs573680085	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q23.2	SGK1	rs573680085-C	0.886297	8E-9	(-434 ms)	0.0533774	[0.035-0.072] unit increase	Affymetrix [10000000] (imputed)	N
1611	chr6	134574431	134574431	rs573680085	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q23.2	SGK1	rs573680085-C	0.886297	5E-8	(-452 ms)	0.0505442	[0.032-0.069] unit increase	Affymetrix [10000000] (imputed)	N
1611	chr6	134574431	134574431	rs573680085	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q23.2	SGK1	rs573680085-C	0.886297	3E-9	(-432 ms)	0.0550182	[0.037-0.073] unit increase	Affymetrix [10000000] (imputed)	N
1611	chr6	134574431	134574431	rs573680085	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q23.2	SGK1	rs573680085-C	0.886297	2E-8	(-450 ms)	0.0520158	[0.034-0.07] unit increase	Affymetrix [10000000] (imputed)	N
1611	chr6	134574431	134574431	rs573680085	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q23.2	SGK1	rs573680085-C	0.886297	2E-8	(-444 ms)	0.0523125	[0.034-0.07] unit increase	Affymetrix [10000000] (imputed)	N
1611	chr6	134574431	134574431	rs573680085	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q23.2	SGK1	rs573680085-C	0.886297	2E-8	(-430 ms)	0.0520927	[0.034-0.07] unit increase	Affymetrix [10000000] (imputed)	N
1611	chr6	134576510	134576511	rs9493873	22610502	Kennedy RB	2012-05-19	Hum Genet	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IFN-alpha)	Up to 512 European ancestry individuals, up to 199 African American individuals	NA	6q23.2	SGK1	rs9493873-G		4E-7	(AA)			Illumina [NR]	N
1611	chr6	134590494	134590495	rs9493877	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	6q23.2	NR	rs9493877-?	NR	1E-6				Affymetrix [NR]	N
1611	chr6	134609290	134609291	rs4896038	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	6q23.2		rs4896038-?	NR	3E-14				NR [~ 8900000] (imputed)	N
1611	chr6	134609290	134609291	rs4896038	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	6q23.2	SGK1	rs4896038-C	0.2241	2E-8		1.053	NR	Affymetrix [9154080] (imputed)	N
1612	chr6	134619861	134619862	rs9389156	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6q23.2	SLC2A12	rs9389156-?	NR	8E-7	(thyroxine)	0.22011563	[0.13-0.31] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1612	chr6	134657948	134657949	rs9483680	33987465	Alfradique-Dunham I	2021-01-28	Neurol Genet	Genome-Wide Association Study Meta-Analysis for Parkinson Disease Motor Subtypes.	Parkinson's disease motor subtype (tremor to postural instability/gait difficulty score ratio)	3,212 European ancestry individuals	NA	6q23.2	SGK1	rs9483680-A	0.9	7E-6		0.19	[0.11-0.27] unit decrease	Illumina [14638245] (imputed)	N
1612	chr6	134691227	134691228	rs114176593	28736931	Rotroff DM	2017-07-24	Clin Pharmacol Ther	Genetic Variants in HSD17B3, SMAD3, and IPO11 Impact Circulating Lipids in Response to Fenofibrate in Individuals With Type 2 Diabetes.	Triglyceride change in response to fenofibrate in statin-treated type 2 diabetes	781 European ancestry individuals, 138 African American ancestry individuals, 345 unknown ancestry individuals		6q23.2	intergenic	rs114176593-?	NR	5E-8	(AA)	0.153	unit increase	Affymetrix, Illumina [8129838] (imputed)	N
1612	chr6	134720066	134720067	rs9402592	23259602	Wang X	2012-12-21	BMC Oral Health	Genome-wide association scan of dental caries in the permanent dentition.	Dental caries	1,483 European ancestry comparatively younger individuals, 5,960 European ancestry comparatively older individuals	NA	6q23.2	LOC442261	rs9402592-?	NR	3E-6	(Comparatively Younger)			Affymetrix, Illumina [~ 1400000] (imputed)	N
1612	chr6	134740059	134740060	rs9399096	32472697	Verma SS	2020-05-30	Clin Pharmacol Ther	Genome-wide association study of platelet reactivity and cardiovascular response in patients treated with clopidogrel: a study by the International Clopidogrel Pharmacogenomics Consortium (ICPC).	Platelet reactivity in response to clopidogrel treatment	2,592 European ancestry individuals	NA	6q23.2	intergenic	rs9399096-?	0.07	4E-6	(adjusted for CYP2C19*2)	0.25	NR unit decrease	Illumina [5009928] (imputed)	N
1613	chr6	134753829	134753830	rs117651013	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	6q23.2		rs117651013-?	NR	6E-14				NR [~ 8900000] (imputed)	N
1613	chr6	134773553	134773554	rs9321453	21768215	Tin A	2011-07-18	Hum Mol Genet	Genome-wide association study for serum urate concentrations and gout among African Americans identifies genomic risk loci and a novel URAT1 loss-of-function allele.	Urate levels	8,651 African American individuals	1,996 African American individuals	6q23.2	intergenic	rs9321453-T	0.42	1E-9	(AA)	0.14	[NR] mg/dl increase	Affymetrix [NR] (imputed)	N
1613	chr6	134810475	134810476	rs9321459	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	6q23.2		rs9321459-?	NR	3E-14				NR [~ 8900000] (imputed)	N
1613	chr6	134813280	134813281	rs62424430	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	6q23.2		rs62424430-?	NR	2E-14				NR [~ 8900000] (imputed)	N
1613	chr6	134824210	134824211	rs10872424	26420894	Wuttke M	2015-09-28	Nephrol Dial Transplant	Genetic loci associated with renal function measures and chronic kidney disease in children: the Pediatric Investigation for Genetic Factors Linked with Renal Progression Consortium.	Glomerular filtration rate in chronic kidney disease	up to 744 Central European ancestry child cases, up to 397 Turkish ancestry child cases	NA	6q23.2	LOC154092	rs10872424-T	0.14	4E-6	(EA)	0.12	[0.061-0.179] unit decrease	Illumina [~ 8300000] (imputed)	N
1613	chr6	134834537	134834538	rs4896068	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	6q23.2	SGK1	rs4896068-?		6E-10				Affymetrix, Illumina [NR] (imputed)	N
1613	chr6	134858498	134858499	rs75581061	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	6q23.2		rs75581061-A	0.877	8E-14		0.12	[-0.16--0.09] % decrease	Affymetrix [NR] (imputed)	N
1613	chr6	134872111	134872112	rs117591301	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Histidine levels	114,897 European ancestry individuals	NA	6q23.2		rs117591301-A	0.972474	2E-9		0.0766699	[0.052-0.102] unit increase	NR [11722792] (imputed)	N
1614	chr6	134894821	134894822	rs228433	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Varicose veins	22,037 European ancestry cases, 437,665 European ancestry controls, 474 East Asian ancestry cases, 178,252 East Asian ancestry controls	NA	6q23.2		rs228433-A	NR	1E-10		0.0724	[0.05-0.094] unit increase	Affymetrix, Illumina [25842955] (imputed)	N
1614	chr6	134894821	134894822	rs228433	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	6q23.2	AL078590.3	rs228433-A	0.6181	5E-13		0.0144	[0.01-0.018] unit decrease	Affymetrix [18391927] (imputed)	N
1614	chr6	134898455	134898456	rs228437	21983787	Barrett JH	2011-10-09	Nat Genet	Genome-wide association study identifies three new melanoma susceptibility loci.	Melanoma	2,804 European ancestry cases, 7,618 European ancestry controls	5,551 European ancestry cases, 7,449 European ancestry controls	6q23.2	ASIP	rs2284378-G	0.33	1E-7		1.21	[1.13-1.29]	Illumina [594997]	N
1614	chr6	134961600	134961601	rs137912555	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	6q23.2		rs137912555-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1614	chr6	134976679	134976680	rs139832438	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	6q23.2		rs139832438-?	NR	2E-22				NR [~ 8900000] (imputed)	N
1615	chr6	135006698	135006699	rs7746708	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	6q23.2		rs7746708-?	NR	4E-29				NR [~ 8900000] (imputed)	N
1615	chr6	135007855	135007856	rs2327527	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	6q23.2		rs2327527-?	NR	3E-12				NR [~ 8900000] (imputed)	N
1615	chr6	135010545	135010546	rs77170649	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q23.2	ALDH8A1	rs77170649-T	0.955703	9E-9	(110 ms)	0.0774043	[0.051-0.104] unit decrease	Affymetrix [10000000] (imputed)	N
1615	chr6	135010545	135010546	rs77170649	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q23.2	ALDH8A1	rs77170649-T	0.955703	8E-9	(158 ms)	0.0760457	[0.05-0.102] unit decrease	Affymetrix [10000000] (imputed)	N
1615	chr6	135010545	135010546	rs77170649	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q23.2	ALDH8A1	rs77170649-T	0.955703	8E-9	(156 ms)	0.076973	[0.051-0.103] unit decrease	Affymetrix [10000000] (imputed)	N
1615	chr6	135010545	135010546	rs77170649	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q23.2	ALDH8A1	rs77170649-T	0.955703	7E-9	(114 ms)	0.078435	[0.052-0.105] unit decrease	Affymetrix [10000000] (imputed)	N
1615	chr6	135010545	135010546	rs77170649	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q23.2	ALDH8A1	rs77170649-T	0.955703	6E-9	(160 ms)	0.0750952	[0.049-0.101] unit decrease	Affymetrix [10000000] (imputed)	N
1615	chr6	135010545	135010546	rs77170649	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q23.2	ALDH8A1	rs77170649-T	0.955703	6E-9	(144 ms)	0.0759782	[0.05-0.102] unit decrease	Affymetrix [10000000] (imputed)	N
1615	chr6	135010545	135010546	rs77170649	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q23.2	ALDH8A1	rs77170649-T	0.955703	5E-9	(112 ms)	0.0792495	[0.053-0.105] unit decrease	Affymetrix [10000000] (imputed)	N
1615	chr6	135010545	135010546	rs77170649	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q23.2	ALDH8A1	rs77170649-T	0.955703	5E-10	(148 ms)	0.0820197	[0.056-0.108] unit decrease	Affymetrix [10000000] (imputed)	N
1615	chr6	135010545	135010546	rs77170649	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q23.2	ALDH8A1	rs77170649-T	0.955703	4E-8	(162 ms)	0.0734308	[0.047-0.1] unit decrease	Affymetrix [10000000] (imputed)	N
1615	chr6	135010545	135010546	rs77170649	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q23.2	ALDH8A1	rs77170649-T	0.955703	4E-8	(126 ms)	0.0749955	[0.049-0.101] unit decrease	Affymetrix [10000000] (imputed)	N
1615	chr6	135010545	135010546	rs77170649	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q23.2	ALDH8A1	rs77170649-T	0.955703	4E-8	(106 ms)	0.075175	[0.049-0.101] unit decrease	Affymetrix [10000000] (imputed)	N
1615	chr6	135010545	135010546	rs77170649	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q23.2	ALDH8A1	rs77170649-T	0.955703	3E-9	(84 ms)	0.0792882	[0.053-0.106] unit decrease	Affymetrix [10000000] (imputed)	N
1615	chr6	135010545	135010546	rs77170649	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q23.2	ALDH8A1	rs77170649-T	0.955703	3E-8	(76 ms)	0.0749965	[0.049-0.101] unit decrease	Affymetrix [10000000] (imputed)	N
1615	chr6	135010545	135010546	rs77170649	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q23.2	ALDH8A1	rs77170649-T	0.955703	3E-8	(74 ms)	0.0748455	[0.048-0.101] unit decrease	Affymetrix [10000000] (imputed)	N
1615	chr6	135010545	135010546	rs77170649	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q23.2	ALDH8A1	rs77170649-T	0.955703	3E-8	(168 ms)	0.0748238	[0.049-0.101] unit decrease	Affymetrix [10000000] (imputed)	N
1615	chr6	135010545	135010546	rs77170649	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q23.2	ALDH8A1	rs77170649-T	0.955703	3E-8	(150 ms)	0.0753487	[0.049-0.101] unit decrease	Affymetrix [10000000] (imputed)	N
1615	chr6	135010545	135010546	rs77170649	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q23.2	ALDH8A1	rs77170649-T	0.955703	3E-8	(102 ms)	0.0749193	[0.049-0.101] unit decrease	Affymetrix [10000000] (imputed)	N
1615	chr6	135010545	135010546	rs77170649	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q23.2	ALDH8A1	rs77170649-T	0.955703	2E-9	(98 ms)	0.0816864	[0.055-0.108] unit decrease	Affymetrix [10000000] (imputed)	N
1615	chr6	135010545	135010546	rs77170649	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q23.2	ALDH8A1	rs77170649-T	0.955703	2E-9	(94 ms)	0.0807793	[0.055-0.107] unit decrease	Affymetrix [10000000] (imputed)	N
1615	chr6	135010545	135010546	rs77170649	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q23.2	ALDH8A1	rs77170649-T	0.955703	2E-9	(130 ms)	0.0825266	[0.056-0.109] unit decrease	Affymetrix [10000000] (imputed)	N
1615	chr6	135010545	135010546	rs77170649	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q23.2	ALDH8A1	rs77170649-T	0.955703	2E-8	(96 ms)	0.0757398	[0.05-0.102] unit decrease	Affymetrix [10000000] (imputed)	N
1615	chr6	135010545	135010546	rs77170649	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q23.2	ALDH8A1	rs77170649-T	0.955703	2E-8	(154 ms)	0.0744987	[0.048-0.101] unit decrease	Affymetrix [10000000] (imputed)	N
1615	chr6	135010545	135010546	rs77170649	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q23.2	ALDH8A1	rs77170649-T	0.955703	2E-8	(142 ms)	0.0753707	[0.049-0.101] unit decrease	Affymetrix [10000000] (imputed)	N
1615	chr6	135010545	135010546	rs77170649	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q23.2	ALDH8A1	rs77170649-T	0.955703	2E-8	(140 ms)	0.0758259	[0.05-0.102] unit decrease	Affymetrix [10000000] (imputed)	N
1615	chr6	135010545	135010546	rs77170649	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q23.2	ALDH8A1	rs77170649-T	0.955703	2E-8	(132 ms)	0.0761274	[0.05-0.102] unit decrease	Affymetrix [10000000] (imputed)	N
1615	chr6	135010545	135010546	rs77170649	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q23.2	ALDH8A1	rs77170649-T	0.955703	2E-11	(92 ms)	0.0901294	[0.064-0.116] unit decrease	Affymetrix [10000000] (imputed)	N
1615	chr6	135010545	135010546	rs77170649	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q23.2	ALDH8A1	rs77170649-T	0.955703	2E-10	(90 ms)	0.0840972	[0.058-0.11] unit decrease	Affymetrix [10000000] (imputed)	N
1615	chr6	135010545	135010546	rs77170649	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q23.2	ALDH8A1	rs77170649-T	0.955703	1E-9	(146 ms)	0.0804955	[0.054-0.107] unit decrease	Affymetrix [10000000] (imputed)	N
1615	chr6	135010545	135010546	rs77170649	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q23.2	ALDH8A1	rs77170649-T	0.955703	1E-9	(128 ms)	0.0833944	[0.057-0.11] unit decrease	Affymetrix [10000000] (imputed)	N
1615	chr6	135010545	135010546	rs77170649	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q23.2	ALDH8A1	rs77170649-T	0.955703	1E-9	(100 ms)	0.0829793	[0.057-0.109] unit decrease	Affymetrix [10000000] (imputed)	N
1615	chr6	135010545	135010546	rs77170649	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q23.2	ALDH8A1	rs77170649-T	0.955703	1E-8	(108 ms)	0.0769237	[0.051-0.103] unit decrease	Affymetrix [10000000] (imputed)	N
1615	chr6	135015920	135015921	rs75522736	30566020	Fukaya E	2018-12-01	Circulation	Clinical and Genetic Determinants of Varicose Veins.	Varicose veins	9,577 British ancestry cases, 327,959 British ancestry controls	NA	6q23.2	NR	rs75522736-G	0.16	1E-8		0.12	[0.079-0.161] unit decrease	Affymetrix [10972371] (imputed)	N
1615	chr6	135022910	135022911	rs34005289	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6q23.3	RP1-287H17.1	rs34005289-G	0.210809	5E-14		0.02068196	[0.015-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1615	chr6	135035371	135035372	rs9385695	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6q23.3	NR	rs9385695-T	0.207679	5E-9		0.0161351	[0.011-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1615	chr6	135035891	135035892	rs6902600	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	6q23.3		rs6902600-G	0.207616	2E-15		0.02182041	[0.016-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1615	chr6	135042140	135042141	rs2327528	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	6q23.3		rs2327528-A	0.210678	6E-38		0.035533153	[0.03-0.041] unit increase	Affymetrix [93095623] (imputed)	N
1615	chr6	135042140	135042141	rs2327528	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	6q23.3		rs2327528-A	0.210667	7E-22		0.026602637	[0.021-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
1615	chr6	135042140	135042141	rs2327528	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	6q23.3		rs2327528-A	0.210679	1E-21		0.026390564	[0.021-0.032] unit increase	Affymetrix [93095623] (imputed)	N
1615	chr6	135043730	135043731	rs9376055	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6q23.3	NR	rs9376055-T	0.207453	5E-10		0.016895454	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1615	chr6	135048563	135048564	rs2327531	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6q23.3		rs2327531-G	0.208323	3E-11		0.01800495	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1615	chr6	135051318	135051320	rs71736125	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	6q23.3	intergenic	rs71736125-T	0.2082	1E-21		0.04309661	[0.034-0.052] unit increase	Affymetrix [~ 2500000] (imputed)	N
1615	chr6	135051812	135051813	rs9402632	31993563	Ware EB	2019-11-22	Mayo Clin Proc Innov Qual Outcomes	Genome-wide Association Study of 24-Hour Urinary Excretion of Calcium, Magnesium, and Uric Acid.	Urinary calcium excretion	6,462 European ancestry individuals	NA	6q23.3	LOC101928277	rs9402632-A	0.61	4E-6		13.05	NR mg decrease	NR [NR] (imputed)	N
1615	chr6	135052079	135052080	rs9402633	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6q23.3		rs9402633-C	0.788	3E-20				Affymetrix [10369434] (imputed)	N
1615	chr6	135052079	135052080	rs9402633	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	6q23.3	intergenic	rs9402633-T	0.2113	2E-13		0.03277933	[0.024-0.042] unit increase	Affymetrix [~ 2500000] (imputed)	N
1615	chr6	135054367	135054368	rs2876263	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6q23.3	HBS1L	rs2876263-?	NR	9E-6	(TAG 52:5)	0.19590247	[0.11-0.28] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1615	chr6	135054367	135054368	rs2876263	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6q23.3	HBS1L	rs2876263-?	NR	1E-6	(TAG 54:8)	0.21320972	[0.13-0.3] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1615	chr6	135058399	135058400	rs4003412	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	6q23.3		rs4003412-?	NR	7E-19				NR [~ 8900000] (imputed)	N
1615	chr6	135058399	135058400	rs4003412	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	6q23.3		rs4003412-?	NR	3E-16				NR [~ 8900000] (imputed)	N
1615	chr6	135094271	135094272	rs11760067	23870195	Wojczynski MK	2013-07-19	BMC Med Genet	Genetics of coronary artery calcification among African Americans, a meta-analysis.	Coronary artery calcification	5,823 African American individuals	9,992 European ancestry individuals	6q23.3	ALDH8A1	rs11760067-T	0.02	7E-6	(AA)	0.8	[0.45-1.15] unit increase	Affymetrix, Illumina [up to 2727966] (imputed)	N
1615	chr6	135119088	135119089	rs4896104	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	6q23.3	ALDH8A1	rs4896104-T	0.5605	1E-13		0.1316	[0.097-0.166] unit decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1616	chr6	135138989	135138990	rs2049953	20708005	Chalasani N	2010-08-10	Gastroenterology	Genome-wide association study identifies variants associated with histologic features of nonalcoholic Fatty liver disease.	Non-alcoholic fatty liver disease histology (AST)	236 European ancestry cases	NA	6q23.3	intergenic	rs2049953-C	0.30	4E-6		0.26	[NR] unit increase	Illumina [324623]	N
1616	chr6	135147575	135147576	rs111660650	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	6q23.3		rs111660650-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1616	chr6	135158516	135158517	rs4896110	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	6q23.3		rs4896110-?	NR	9E-56				NR [~ 8900000] (imputed)	N
1616	chr6	135197907	135197908	rs9399125	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	6q23.3	LOC101928304	rs9399125-C	NR	7E-7		1.066098	NR	Affymetrix, Illumina [8278136] (imputed)	N
1616	chr6	135204049	135204050	rs112901136	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6q23.3		rs112901136-T	0.979	2E-13				Affymetrix [10369434] (imputed)	N
1616	chr6	135219214	135219215	rs62429552	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	6q23.3		rs62429552-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1616	chr6	135219214	135219215	rs62429552	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6q23.3		rs62429552-G	0.97	2E-14				Affymetrix [10369434] (imputed)	N
1616	chr6	135227088	135227089	rs6899500	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	6q23.3		rs6899500-?	NR	1E-300				NR [~ 8900000] (imputed)	N
1617	chr6	135276695	135276696	rs4440481	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	6q23.3	HBS1L	rs4440481-C	0.434835	5E-18		0.0335137	[0.029-0.038] unit increase	Affymetrix [93095623] (imputed)	N
1617	chr6	135280518	135280519	rs9376072	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	6q23.3	HBS1L	rs9376072-C	0.4336	9E-35		0.04447491	[0.037-0.052] unit increase	Affymetrix [~ 2500000] (imputed)	N
1617	chr6	135282655	135282656	rs9389248	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	6q23.3	HBS1L	rs9389248-C	0.4354	3E-26		0.03820925	[0.031-0.045] unit increase	Affymetrix [~ 2500000] (imputed)	N
1617	chr6	135283817	135283818	rs41286240	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6q23.3		rs41286240-A	0.965	9E-22				Affymetrix [10369434] (imputed)	N
1617	chr6	135283817	135283818	rs41286240	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6q23.3		rs41286240-A	0.965	8E-22				Affymetrix [10369434] (imputed)	N
1617	chr6	135297661	135297662	rs4580893	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	6q23.3	HBS1L	rs4580893-A	0.3799	4E-27		0.04043883	[0.033-0.048] unit increase	Affymetrix [~ 2500000] (imputed)	N
1617	chr6	135322619	135322620	rs9402673	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	6q23.3	HBS1L	rs9402673-T	0.433185	1E-20		0.025569124	[0.02-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
1617	chr6	135322619	135322620	rs9402673	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	6q23.3	HBS1L	rs9402673-T	0.4291	2E-21		0.03463692	[0.028-0.042] unit increase	Affymetrix [~ 2500000] (imputed)	N
1617	chr6	135322619	135322620	rs9402673	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	6q23.3	HBS1L	rs9402673-T	0.429	7E-20		0.03313665	[0.026-0.04] unit increase	Affymetrix [~ 2500000] (imputed)	N
1617	chr6	135343526	135343527	rs148394396	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	6q23.3		rs148394396-?	NR	4E-33				NR [~ 8900000] (imputed)	N
1617	chr6	135344454	135344455	rs35367489	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Red blood cell count	108,794 Japanese ancestry individuals	NA	6q23.3	NR	rs35367489-?	NR	3E-20	(conditional on round 2)	0.042022318	[0.033-0.051] unit increase novel	Illumina [6108953] (imputed)	N
1617	chr6	135346350	135346351	rs13192235	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	6q23.3	NR	rs13192235-A	NR	9E-12		0.0352	[0.025-0.045] unit decrease	Affymetrix [9000000] (imputed)	N
1617	chr6	135348014	135348014	rs5880242	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	6q23.3	HBS1L	rs5880242-CA	0.492004	2E-25		0.026778616	[0.022-0.032] unit increase	Affymetrix [93095623] (imputed)	N
1617	chr6	135348014	135348014	rs5880242	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6q23.3	HBS1L	rs5880242-CA	0.492018	2E-58		0.036141366	[0.032-0.041] unit increase	Affymetrix [93095623] (imputed)	N
1617	chr6	135348014	135348014	rs5880242	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	6q23.3	HBS1L	rs5880242-CA	0.491918	6E-27		0.02741835	[0.022-0.032] unit increase	Affymetrix [93095623] (imputed)	N
1617	chr6	135348014	135348014	rs5880242	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6q23.3	HBS1L	rs5880242-CA	0.491922	4E-63		0.03724576	[0.033-0.042] unit increase	Affymetrix [93095623] (imputed)	N
1617	chr6	135349402	135349402	rs530424960	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	6q23.3	HBS1L	rs530424960-TA	0.3653	1E-17		0.03181189	[0.025-0.039] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1617	chr6	135354072	135354072	rs6149819	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	6q23.3	HBS1L	rs6149819-GAAAAAGGAAAAGTTT	0.483407	6E-19		0.020022398	[0.016-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1617	chr6	135366308	135366309	rs6940878	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	6q23.3	HBS1L	rs6940878-A	0.37664	4E-74		0.05462313	[0.049-0.06] unit increase	Affymetrix [93095623] (imputed)	N
1617	chr6	135368313	135368314	rs9399135	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	6q23.3	HBS1L	rs9399135-A	0.4958	1E-22		0.03472818	[0.028-0.042] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1617	chr6	135382979	135382980	rs6904897	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6q23.3	HBS1L	rs6904897-G	0.377227	1E-55		0.0470194	[0.041-0.053] unit decrease	Affymetrix [93095623] (imputed)	N
1617	chr6	135382979	135382980	rs6904897	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	6q23.3	HBS1L	rs6904897-G	0.3793	4E-55		0.05672822	[0.05-0.064] unit increase	Affymetrix [~ 2500000] (imputed)	N
1617	chr6	135382979	135382980	rs6904897	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	6q23.3	HBS1L	rs6904897-G	0.3793	2E-67		0.06313863	[0.056-0.07] unit increase	Affymetrix [~ 2500000] (imputed)	N
1617	chr6	135383218	135383221	rs34825830	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	6q23.3	HBS1L	rs34825830-T	0.37758	1E-123		0.049736	[0.046-0.054] unit increase	Affymetrix [93095623] (imputed)	N
1617	chr6	135383218	135383221	rs34825830	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	6q23.3	HBS1L	rs34825830-T	0.377605	2E-123		0.06996565	[0.064-0.076] unit decrease	Affymetrix [93095623] (imputed)	N
1617	chr6	135384187	135384188	rs12664956	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	6q23.3	HBS1L	rs12664956-C	0.377037	1E-21		0.031311568	[0.025-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
1617	chr6	135384187	135384188	rs12664956	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red blood cell traits (multivariate analysis)	29,513 European ancestry individuals	NA	6q23.3	NR	rs12664956-?	0.37	1E-6				Affymetrix, Illumina [21000000] (imputed)	N
1617	chr6	135384187	135384188	rs12664956	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular volume	14,483 European ancestry individuals	NA	6q23.3		rs12664956-?	0.37	4E-8		0.2896	[0.19-0.39] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
1617	chr6	135384187	135384188	rs12664956	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin	14,693 European ancestry individuals	NA	6q23.3		rs12664956-?	0.37	2E-6		0.0989	[0.059-0.139] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
1617	chr6	135384187	135384188	rs12664956	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular volume	108,256 Japanese ancestry individuals	NA	6q23.3	NR	rs12664956-?	NR	2E-28	(conditional on round 2)	0.050826687	[0.042-0.06] unit decrease novel	Illumina [6108953] (imputed)	N
1617	chr6	135384187	135384188	rs12664956	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin	108,054 Japanese ancestry individuals	NA	6q23.3	NR	rs12664956-?	NR	1E-30	(conditional on round 2)	0.052767143	[0.044-0.062] unit decrease novel	Illumina [6108953] (imputed)	N
1617	chr6	135389518	135389519	rs56131511	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	6q23.3		rs56131511-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1617	chr6	135389518	135389519	rs56131511	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	6q23.3		rs56131511-?	NR	1E-17				NR [~ 8900000] (imputed)	N
1617	chr6	135390835	135390836	rs1547247	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	6q23.3	HBS1L	rs1547247-A	0.306652	7E-13		0.028107464	[0.02-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
1617	chr6	135390835	135390836	rs1547247	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	6q23.3		rs1547247-?	NR	1E-300				NR [~ 8900000] (imputed)	N
1617	chr6	135391464	135391465	rs11757577	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	6q23.3	HBS1L	rs11757577-A	0.496779	6E-29		0.028530402	[0.024-0.034] unit increase	Affymetrix [93095623] (imputed)	N
1617	chr6	135391464	135391465	rs11757577	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Platelet count	108,208 Japanese ancestry individuals	NA	6q23.3	NR	rs11757577-?	NR	1E-7		0.02309	[0.015-0.032] unit increase novel	Illumina [6108953] (imputed)	N
1617	chr6	135392099	135392100	rs4896131	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin concentration	108,728 Japanese ancestry individuals	NA	6q23.3	NR	rs4896131-?	NR	2E-8	(conditional on round 2)	0.02504868	[0.016-0.034] unit decrease novel	Illumina [6108953] (imputed)	N
1617	chr6	135392099	135392100	rs4896131	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin concentration	172,851 European ancestry individuals	NA	6q23.3	HBS1L	rs4896131-A	0.4901	2E-9		0.02082222	[0.014-0.028] unit increase	Affymetrix [~ 2500000] (imputed)	N
1617	chr6	135395547	135395548	rs13220662	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	6q23.3	HBS1L	rs13220662-A	0.338863	1E-17		0.03134341	[0.024-0.039] unit decrease	Affymetrix [93095623] (imputed)	N
1618	chr6	135399242	135399243	rs7763883	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6q23.3		rs7763883-C	0.864	2E-15				Affymetrix [10369434] (imputed)	N
1618	chr6	135400564	135400565	rs9389263	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	6q23.3	HBS1L	rs9389263-A	0.495065	2E-22		0.030685721	[0.025-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
1618	chr6	135402338	135402339	rs9399136	33536631	Bell S	2021-02-03	Commun Biol	A genome-wide meta-analysis yields 46 new loci associating with biomarkers of iron homeostasis.	Iron status biomarkers (transferrin saturation)	131,471 European ancestry individuals	NA	6q23.3	HBS1L	rs9399136-C	0.259	5E-39		0.067	[0.057-0.077] SD increase	Affymetrix, Illumina [40000000] (imputed)	N
1618	chr6	135402338	135402339	rs9399136	33536631	Bell S	2021-02-03	Commun Biol	A genome-wide meta-analysis yields 46 new loci associating with biomarkers of iron homeostasis.	Iron status biomarkers (total iron binding capacity)	135,430 European ancestry individuals	NA	6q23.3	HBS1L	rs9399136-C	0.259	3E-10		0.033	[0.044-0.023] SD decrease	Affymetrix, Illumina [40000000] (imputed)	N
1618	chr6	135402338	135402339	rs9399136	33536631	Bell S	2021-02-03	Commun Biol	A genome-wide meta-analysis yields 46 new loci associating with biomarkers of iron homeostasis.	Iron status biomarkers (iron levels)	163,511 European ancestry individuals	NA	6q23.3	HBS1L	rs9399136-C	0.259	1E-36		0.057	[0.049-0.066] SD increase	Affymetrix, Illumina [40000000] (imputed)	N
1618	chr6	135402338	135402339	rs9399136	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q23.3	NR	rs9399136-C	0.267656	7E-2446				Affymetrix, Illumina [20825802] (imputed)	N
1618	chr6	135402338	135402339	rs9399136	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	6q23.3		rs9399136-?	NR	1E-300				NR [~ 8900000] (imputed)	N
1618	chr6	135402338	135402339	rs9399136	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	White blood cell count	107,964 Japanese ancestry individuals	NA	6q23.3	HBS1L, MYB	rs9399136-?	NR	4E-21		0.04238	[0.034-0.051] unit decrease novel	Illumina [6108953] (imputed)	N
1618	chr6	135402338	135402339	rs9399136	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Hemoglobin	108,769 Japanese ancestry individuals	NA	6q23.3	HBS1L, MYB	rs9399136-?	NR	2E-17		0.03809	[0.029-0.047] unit decrease novel	Illumina [6108953] (imputed)	N
1618	chr6	135405121	135405122	rs1331308	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	6q23.3	HBS1L	rs1331308-C	0.496215	9E-17		0.022872934	[0.017-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1618	chr6	135405121	135405122	rs1331308	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	6q23.3	HBS1L	rs1331308-C	0.4958	1E-23		0.03678186	[0.03-0.044] unit increase	Affymetrix [~ 2500000] (imputed)	N
1618	chr6	135405121	135405122	rs1331308	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	6q23.3	HBS1L	rs1331308-C	0.4957	2E-19		0.0330161	[0.026-0.04] unit increase	Affymetrix [~ 2500000] (imputed)	N
1618	chr6	135406177	135406178	rs1331309	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	151,807 East Asian ancestry individuals	NA	6q23.3	NR	rs1331309-T	0.660225	1E-34		0.047581	[0.04-0.055] SD units increase	Affymetrix, Illumina [16710636] (imputed)	N
1618	chr6	135406177	135406178	rs1331309	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Hematocrit	108,757 Japanese ancestry individuals	NA	6q23.3	HBS1L, MYB	rs1331309-?	NR	4E-46		0.06368	[0.055-0.072] unit decrease novel	Illumina [6108953] (imputed)	N
1618	chr6	135406177	135406178	rs1331309	28548082	Southam L	2017-05-26	Nat Commun	Whole genome sequencing and imputation in isolated populations identify genetic associations with medically-relevant complex traits.	Mean corpuscular hemoglobin	up to 1,476 Mylopotamos (founder/genetic isolate) individuals, up to 1,737 Pomak (founder/genetic isolate) individuals	NA	6q23.3	MYB, HBS1L	rs1331309-G	0.228	2E-9		0.201	[0.14-0.27] unit increase	Illumina [at least 13541454] (imputed)	N
1618	chr6	135406182	135406183	rs9402682	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	6q23.3	HBS1L	rs9402682-T	0.240108	6E-32		0.031157061	[0.026-0.036] unit increase	Affymetrix [93095623] (imputed)	N
1618	chr6	135406182	135406183	rs9402682	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6q23.3	HBS1L	rs9402682-T	0.240116	3E-22		0.026683223	[0.021-0.032] unit increase	Affymetrix [93095623] (imputed)	N
1618	chr6	135406182	135406183	rs9402682	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	6q23.3	HBS1L	rs9402682-T	0.241	1E-21		0.04025881	[0.032-0.049] unit increase	Affymetrix [~ 2500000] (imputed)	N
1618	chr6	135406182	135406183	rs9402682	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	6q23.3	HBS1L	rs9402682-T	0.2409	5E-18		0.03658366	[0.028-0.045] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1618	chr6	135406182	135406183	rs9402682	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	6q23.3	HBS1L	rs9402682-T	0.2409	7E-17		0.03514971	[0.027-0.043] unit increase	Affymetrix [~ 2500000] (imputed)	N
1618	chr6	135406182	135406183	rs9402682	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	6q23.3	HBS1L	rs9402682-T	0.2409	9E-17		0.03517155	[0.027-0.043] unit increase	Affymetrix [~ 2500000] (imputed)	N
1618	chr6	135406182	135406183	rs9402682	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	6q23.3	HBS1L	rs9402682-T	0.241	1E-19		0.03827879	[0.03-0.047] unit increase	Affymetrix [~ 2500000] (imputed)	N
1618	chr6	135411227	135411228	rs9376090	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	6q23.3		rs9376090-C	NR	4E-14		0.0163	[0.012-0.021] unit decrease	Affymetrix, Illumina [20536134] (imputed)	N
1618	chr6	135411227	135411228	rs9376090	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	153,512 East Asian ancestry individuals	NA	6q23.3		rs9376090-C	0.34575	4E-342		0.129284	[0.12-0.14] unit decrease	Illumina [13479135] (imputed)	N
1618	chr6	135411227	135411228	rs9376090	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	6q23.3		rs9376090-C	NR	1E-9		0.0144	[0.0097-0.0191] unit decrease	Affymetrix, Illumina [20521447] (imputed)	N
1618	chr6	135411227	135411228	rs9376090	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	152,447 East Asian ancestry individuals	NA	6q23.3		rs9376090-C	0.345508	2E-31		0.0375197	[0.031-0.044] unit decrease	Illumina [13478948] (imputed)	N
1618	chr6	135411227	135411228	rs9376090	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	153,015 East Asian ancestry individuals	NA	6q23.3		rs9376090-C	0.345754	2E-75		0.0602905	[0.054-0.067] unit decrease	Illumina [13478961] (imputed)	N
1618	chr6	135411227	135411228	rs9376090	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	6q23.3	HBS1L	rs9376090-T	0.7331	2E-62		0.0247	[0.022-0.027] unit increase	Affymetrix, Illumina [33811881] (imputed)	N
1618	chr6	135411227	135411228	rs9376090	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	150,708 East Asian ancestry individuals	NA	6q23.3	NR	rs9376090-T	0.658261	1E-324		0.147886	[0.14-0.16] SD units increase	Affymetrix, Illumina [16709798] (imputed)	N
1618	chr6	135411227	135411228	rs9376090	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	121,047 East Asian ancestry individuals	NA	6q23.3	NR	rs9376090-T	0.655553	1E-368		0.175245	[0.17-0.18] SD units decrease	Affymetrix, Illumina [16286195] (imputed)	N
1618	chr6	135411227	135411228	rs9376090	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	119,629 East Asian ancestry individuals	NA	6q23.3	NR	rs9376090-T	0.655569	4E-441		0.192952	[0.18-0.2] SD units decrease	Affymetrix, Illumina [16286228] (imputed)	N
1618	chr6	135411227	135411228	rs9376090	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	149,861 East Asian ancestry individuals	NA	6q23.3	NR	rs9376090-T	0.65831	1E-28		0.042867	[0.035-0.05] SD units increase	Affymetrix, Illumina [16709126] (imputed)	N
1618	chr6	135411227	135411228	rs9376090	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	142,940 East Asian ancestry individuals	NA	6q23.3	NR	rs9376090-T	0.655348	1E-72		0.070854	[0.063-0.079] SD units increase	Affymetrix, Illumina [16289021] (imputed)	N
1618	chr6	135411227	135411228	rs9376090	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6q23.3	NR	rs9376090-T	NR	7E-17		0.04	unit increase	Affymetrix [at least 7091467] (imputed)	N
1618	chr6	135411227	135411228	rs9376090	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6q23.3	NR	rs9376090-T	0.745	2E-16	(EA)	0.043	unit increase	Affymetrix [at least 7091467] (imputed)	N
1618	chr6	135411227	135411228	rs9376090	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6q23.3	NR	rs9376090-T	NR	2E-14		0.038	unit increase	Affymetrix [at least 7091467] (imputed)	N
1618	chr6	135411227	135411228	rs9376090	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6q23.3	NR	rs9376090-T	0.745	2E-14	(EA)	0.041	unit increase	Affymetrix [at least 7091467] (imputed)	N
1618	chr6	135411227	135411228	rs9376090	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Red blood cell count	108,794 Japanese ancestry individuals	NA	6q23.3	HBS1L, MYB	rs9376090-?	NR	2E-218		0.1404	[0.13-0.15] unit decrease novel	Illumina [6108953] (imputed)	N
1618	chr6	135411227	135411228	rs9376090	29066854	Lin BD	2017-11-01	J Hum Genet	2SNP heritability and effects of genetic variants for neutrophil-to-lymphocyte and platelet-to-lymphocyte ratio.	Platelet count	5,901 Dutch ancestry individuals	2,538 individuals	6q23.3	HBS1L, MYB	rs9376090-?	NR	2E-8		7.296	[4.76-9.83] unit increase	Affymetrix, Illumina, Perlegen [6010458] (imputed)	N
1618	chr6	135411227	135411228	rs9376090	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Total cholesterol levels	32,576 East Asian ancestry individuals, 187,365 European ancestry individuals	10,855 Chinese ancestry individuals	6q23.3	HBS1L	rs9376090-T	0.728	2E-14	(Trans-ethnic initial)	0.0254	[0.018-0.033] unit increase (EA Beta values)	Affymetrix, Illumina [up to 1900000] (imputed)	N
1618	chr6	135411227	135411228	rs9376090	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular hemoglobin concentration	up to 21,020 European ancestry individuals, up to 3,621 African American individuals, up to 15,062 East Asian individuals.	16,389 European and African American individuals.	6q23.3	HBS1L	rs9376090-T	NR	5E-9	(Asian)	0.0019	[0.0013-0.0025] unit decrease	NR [2500000] (imputed)	N
1618	chr6	135411227	135411228	rs9376090	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	6q23.3	HBS1L	rs9376090-C	0.2598	3E-34		0.04957227	[0.042-0.058] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1618	chr6	135411227	135411228	rs9376090	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	6q23.3	HBS1L	rs9376090-C	0.2599	7E-88		0.0803522	[0.072-0.088] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1618	chr6	135411227	135411228	rs9376090	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	6q23.3	HBS1L	rs9376090-C	0.28	3E-9		0.025	[NR] unit decrease	NR [NR] (imputed)	N
1618	chr6	135412381	135412382	rs41294856	33385171	Hagg S	2020-12-31	Hum Genet	Deciphering the genetic and epidemiological landscape of mitochondrial DNA abundance.	Mitochondrial DNA levels	295,150 European ancestry individuals	NA	6q23.3	NR	rs41294856-T	0.09046	6E-9		0.0250398	[0.017-0.033] unit decrease	Affymetrix [3505788] (imputed)	N
1618	chr6	135412635	135412636	rs41294858	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	6q23.3	HBS1L	rs41294858-C	0.0992	6E-113		0.1341788	[0.12-0.15] unit increase	Affymetrix [~ 2500000] (imputed)	N
1618	chr6	135414849	135414850	rs55731938	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	6q23.3	HBS1L	rs55731938-A	0.115857	2E-21		0.039177354	[0.031-0.047] unit decrease	Affymetrix [93095623] (imputed)	N
1618	chr6	135415003	135415004	rs7745098	24149102	Frampton M	2013-10-22	Nat Commun	Variation at 3p24.1 and 6q23.3 influences the risk of Hodgkin's lymphoma.	Hodgkin's lymphoma	1,465 European ancestry cases, 6,417 European ancestry controls	1,071 European ancestry cases, 953 cases, 1,853 controls	6q23.3	HBS1L, MYB	rs7745098-G	0.48	3E-9		1.21	[1.14-1.29]	Illumina [296129]	N
1618	chr6	135415207	135415208	rs2210366	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	93,063 East Asian ancestry individuals	NA	6q23.3		rs2210366-A	0.364891	6E-31		0.0530246	[0.044-0.062] unit increase	Illumina [13470073] (imputed)	N
1618	chr6	135415207	135415208	rs2210366	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	86,890 East Asian ancestry individuals	NA	6q23.3	NR	rs2210366-G	0.638615	2E-34		0.061086	[0.051-0.071] SD units decrease	Affymetrix, Illumina [16279099] (imputed)	N
1618	chr6	135415207	135415208	rs2210366	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Eosinophil counts	62,076 Japanese ancestry individuals	NA	6q23.3	HBS1L, MYB	rs2210366-?	NR	2E-22		0.05751	[0.046-0.069] unit increase novel	Illumina [6108953] (imputed)	N
1618	chr6	135415207	135415208	rs2210366	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	6q23.3	HBS1L	rs2210366-A	0.2565	3E-210		0.125015	[0.12-0.13] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1618	chr6	135415468	135415468	rs567333455	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	6q23.3	HBS1L	rs567333455-CA	0.262476	2E-47		0.041610382	[0.036-0.047] unit increase	Affymetrix [93095623] (imputed)	N
1618	chr6	135415468	135415468	rs567333455	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6q23.3	HBS1L	rs567333455-CA	0.262372	2E-14		0.022217205	[0.017-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
1618	chr6	135415468	135415468	rs567333455	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	6q23.3	HBS1L	rs567333455-CA	0.262381	1E-47		0.122122	[0.12-0.13] unit decrease	Affymetrix [93095623] (imputed)	N
1618	chr6	135415468	135415468	rs567333455	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	6q23.3	HBS1L	rs567333455-CA	0.26233	1E-48		0.041197006	[0.036-0.047] unit decrease	Affymetrix [93095623] (imputed)	N
1618	chr6	135415468	135415468	rs567333455	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	6q23.3	HBS1L	rs567333455-CA	0.2625	9E-216		0.1291719	[0.12-0.14] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1618	chr6	135418632	135418635	rs66650371	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Platelet count	27,236 European ancestry individuals	NA	6q23.3		rs66650371-T	0.8223	2E-10		0.0812	[0.056-0.106] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1618	chr6	135418632	135418635	rs66650371	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Platelet count	16,201 African American or Afro-Caribbean individuals	NA	6q23.3		rs66650371-T	0.8196	4E-9		0.0945	[0.063-0.126] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1618	chr6	135418632	135418635	rs66650371	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	6q23.3	HBS1L	rs66650371-T	0.258271	2E-48		0.037353776	[0.032-0.042] unit decrease	Affymetrix [93095623] (imputed)	N
1618	chr6	135418632	135418635	rs66650371	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	6q23.3	HBS1L	rs66650371-?	0.2281	1E-19		0.031	[0.024-0.038] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1618	chr6	135418632	135418632	rs778641135	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Spleen volume	32,860 European ancestry individuals	NA	6q23.3	HBS1L	rs778641135-?	NR	2E-11		0.0534	NR L increase	Affymetrix [9390170] (imputed)	N
1618	chr6	135418634	135418637	rs371998411	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	71,221 East Asian ancestry individuals	NA	6q23.3		rs371998411-T	0.347967	1E-16		0.0367198	[0.028-0.045] unit decrease	Illumina [13466143] (imputed)	N
1618	chr6	135418634	135418635	rs7775698	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	6q23.3		rs7775698-C	0.738	3E-790		0.73	[-0.76--0.71] % decrease	Affymetrix [NR] (imputed)	N
1618	chr6	135418634	135418635	rs7775698	33545615	Hsu LA	2021-01-19	Atherosclerosis	Circulating chemerin levels are determined through circulating platelet counts in nondiabetic Taiwanese people: A bidirectional Mendelian randomization study.	Platelet count	17,037 Han Chinese ancestry individuals	NA	6q23.3	HBS1L, MYB	rs7775698-?	NR	2E-18		7.248	[5.86-8.64] unit increase (adjusted)	Affymetrix [603527]	N
1618	chr6	135418634	135418635	rs7775698	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6q23.3	HBS1L	rs7775698-T	0.261704	3E-80		0.04758986	[0.043-0.053] unit decrease	Affymetrix [93095623] (imputed)	N
1618	chr6	135418634	135418635	rs7775698	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	6q23.3	HBS1L	rs7775698-T	0.261828	2E-45		0.041151643	[0.035-0.047] unit increase	Affymetrix [93095623] (imputed)	N
1618	chr6	135418634	135418635	rs7775698	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	6q23.3	HBS1L	rs7775698-T	0.261864	1E-354		0.12290992	[0.12-0.13] unit decrease	Affymetrix [93095623] (imputed)	N
1618	chr6	135418634	135418635	rs7775698	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	6q23.3	HBS1L	rs7775698-T	0.261647	3E-178		0.17700624	[0.16-0.19] unit decrease	Affymetrix [93095623] (imputed)	N
1618	chr6	135418634	135418635	rs7775698	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	6q23.3	HBS1L	rs7775698-T	0.261774	4E-225		0.189733	[0.19-0.19] unit increase	Affymetrix [93095623] (imputed)	N
1618	chr6	135418634	135418635	rs7775698	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	6q23.3	HBS1L	rs7775698-T	0.261811	1E-279		0.2173901	[0.21-0.23] unit increase	Affymetrix [93095623] (imputed)	N
1618	chr6	135418634	135418635	rs7775698	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	6q23.3	HBS1L	rs7775698-T	0.261764	5E-33		0.03456912	[0.029-0.04] unit increase	Affymetrix [93095623] (imputed)	N
1618	chr6	135418634	135418635	rs7775698	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	6q23.3	HBS1L	rs7775698-T	0.261649	2E-106		0.068327084	[0.062-0.074] unit decrease	Affymetrix [93095623] (imputed)	N
1618	chr6	135418634	135418635	rs7775698	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	6q23.3	HBS1L	rs7775698-T	0.261657	9E-267		0.10089703	[0.095-0.107] unit decrease	Affymetrix [93095623] (imputed)	N
1618	chr6	135418634	135418635	rs7775698	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q23.3	NR	rs7775698-C	0.765917	5E-429				Affymetrix, Illumina [22063850] (imputed)	N
1618	chr6	135418634	135418635	rs7775698	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Platelet count	8,850 African American individuals, 18,949 Hispanic/Latino individuals, 541 Asian ancestry individuals, 603 Native American ancestry individuals, 385 individuals	NA	6q23.3	NR	rs7775698-?	NR	4E-17		5.461102	[4.19-6.73] unit increase	Illumina [30743395] (imputed)	N
1618	chr6	135418634	135418635	rs7775698	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	6q23.3	NR	rs7775698-T	NR	1E-108		0.0966506	[0.088-0.105] unit decrease	Affymetrix [16832071] (imputed)	N
1618	chr6	135418634	135418635	rs7775698	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Total cholesterol levels	32,576 East Asian ancestry individuals, 187,365 European ancestry individuals	10,855 Chinese ancestry individuals	6q23.3	HBS1L	rs7775698-T	0.29	2E-11	(Asian initial, BMI unadjusted)	0.077	[0.055-0.099] unit decrease	Affymetrix, Illumina [up to 1900000] (imputed)	N
1618	chr6	135418634	135418635	rs7775698	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Total cholesterol levels	22,814 East Asian ancestry individuals	57,490 East Asian ancestry individuals	6q23.3	HBS1L	rs7775698-T	0.29	1E-11	(BMI unadjusted)	0.077	[0.055-0.099] unit decrease	Affymetrix, Illumina [~ 2400000] (imputed)	N
1618	chr6	135418634	135418635	rs7775698	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	LDL cholesterol levels	22,526 East Asian ancestry individuals	37,842 East Asian ancestry individuals	6q23.3	HBS1L	rs7775698-T	0.29	2E-8	(BMI unadjusted)	0.064	[0.042-0.086] unit decrease	Affymetrix, Illumina [~ 2400000] (imputed)	N
1618	chr6	135418634	135418635	rs7775698	23263863	Li J	2012-12-20	Hum Mol Genet	GWAS of blood cell traits identifies novel associated loci and epistatic interactions in Caucasian and African-American children.	Mean corpuscular volume	7,943 African American children, 6,234 European ancestry children	NA	6q23.3	HBS1L, MYB	rs7775698-T	0.2615	2E-9	(EA)	0.5411	[0.37-0.72] unit increase	Illumina [544917]	N
1618	chr6	135418634	135418635	rs7775698	23263863	Li J	2012-12-20	Hum Mol Genet	GWAS of blood cell traits identifies novel associated loci and epistatic interactions in Caucasian and African-American children.	Mean corpuscular hemoglobin	7,943 African American children, 6,234 European ancestry children	NA	6q23.3	HBS1L, MYB	rs7775698-T	0.2615	4E-13	(EA)	0.2534	[0.19-0.32] unit increase	Illumina [544917]	N
1618	chr6	135418634	135418635	rs7775698	20927387	Kullo IJ	2010-09-28	PLoS One	A genome-wide association study of red blood cell traits using the electronic medical record.	Red blood cell traits	3,012 European ancestry individuals	NA	6q23.3	HBS1L, MYB	rs7775698-T	0.26	1E-14	(RBC count)	0.09	[0.07-0.11] unit decrease	Illumina [489421]	N
1618	chr6	135418634	135418635	rs7775698	20927387	Kullo IJ	2010-09-28	PLoS One	A genome-wide association study of red blood cell traits using the electronic medical record.	Red blood cell traits	3,012 European ancestry individuals	NA	6q23.3	HBS1L, MYB	rs7775698-T	0.24	1E-15	(MCH)	0.38	[0.29-0.47] unit increase	Illumina [489421]	N
1618	chr6	135418634	135418635	rs7775698	20139978	Kamatani Y	2010-02-07	Nat Genet	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Red blood cell count	14,392 Japanese ancestry individuals	NA	6q23.3	HBS1L, MYB	rs7775698-T	0.35	7E-48		0.179	[0.16-0.20] unit decrease	Illumina [561583]	N
1618	chr6	135418634	135418635	rs7775698	20139978	Kamatani Y	2010-02-07	Nat Genet	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Platelet count	14,806 Japanese ancestry individuals	NA	6q23.3	HBS1L, MYB	rs7775698-T	0.34	3E-14		0.093	[0.069-0.117] unit increase	Illumina [561583]	N
1618	chr6	135418634	135418635	rs7775698	20139978	Kamatani Y	2010-02-07	Nat Genet	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Mean corpuscular volume	14,364 Japanese ancestry individuals	NA	6q23.3	HBS1L, MYB	rs7775698-T	0.35	3E-56		0.194	[0.17-0.22] unit increase	Illumina [561583]	N
1618	chr6	135418634	135418635	rs7775698	20139978	Kamatani Y	2010-02-07	Nat Genet	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Mean corpuscular hemoglobin concentration	14,377 Japanese ancestry individuals	NA	6q23.3	HBS1L, MYB	rs7775698-T	0.35	6E-12		0.085	[0.061-0.109] unit increase	Illumina [561583]	N
1618	chr6	135418634	135418635	rs7775698	20139978	Kamatani Y	2010-02-07	Nat Genet	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Mean corpuscular hemoglobin	Up to 14,362 Japanese ancestry individuals	NA	6q23.3	HBS1L, MYB	rs7775698-T	0.35	3E-66		0.211	[0.19-0.23] unit increase	Illumina [561583]	N
1618	chr6	135418634	135418635	rs7775698	20139978	Kamatani Y	2010-02-07	Nat Genet	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Hematological and biochemical traits	Up to 14,402 Japanese individuals	NA	6q23.3	HBS1L, MYB	rs7775698-T	0.35	1E-10	(Ht)	0.08	[0.056-0.104] unit decrease	Illumina [561583]	N
1618	chr6	135418634	135418635	rs7775698	19853236	Ferreira MA	2009-10-22	Am J Hum Genet	Sequence variants in three loci influence monocyte counts and erythrocyte volume.	Mean corpuscular volume	2,538 European ancestry individuals, 3,477 individuals	1,543 individuals	6q23.3	HBS1L, MYB	rs7775698-C	0.74	8E-18		0.19	[0.15-0.23] s.d. decrease	Illumina, Perlegen [~ 2500000] (imputed)	N
1618	chr6	135418634	135418635	rs7775698	19853236	Ferreira MA	2009-10-22	Am J Hum Genet	Sequence variants in three loci influence monocyte counts and erythrocyte volume.	Mean corpuscular hemoglobin	2,538 European ancestry individuals, 3,477 individuals	1,543 individuals	6q23.3	HBS1L, MYB	rs7775698-C	0.74	5E-13		0.19	[0.13-0.25] s.d. decrease	Illumina, Perlegen [~ 2500000] (imputed)	N
1618	chr6	135418915	135418916	rs7776054	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	6q23.3		rs7776054-G	NR	1E-27		0.0231	[0.019-0.027] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
1618	chr6	135418915	135418916	rs7776054	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6q23.3		rs7776054-A	0.738	1E-240				Affymetrix [10369434] (imputed)	N
1618	chr6	135418915	135418916	rs7776054	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6q23.3		rs7776054-A	0.738	5E-34				Affymetrix [10369434] (imputed)	N
1618	chr6	135418915	135418916	rs7776054	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6q23.3		rs7776054-A	0.738	3E-24				Affymetrix [10369434] (imputed)	N
1618	chr6	135418915	135418916	rs7776054	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6q23.3		rs7776054-A	0.738	9E-35				Affymetrix [10369434] (imputed)	N
1618	chr6	135418915	135418916	rs7776054	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	6q23.3	HBS1L, MYB	rs7776054-A	0.74	6E-20		9.14	z-score increase	Affymetrix [4314223] (imputed)	N
1618	chr6	135418915	135418916	rs7776054	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	6q23.3	HBS1L	rs7776054-G	0.261613	1E-45		0.10043314	[0.087-0.114] unit increase	Affymetrix [93095623] (imputed)	N
1618	chr6	135418915	135418916	rs7776054	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q23.3	NR	rs7776054-G	0.274602	2E-138				Affymetrix, Illumina [24649327] (imputed)	N
1618	chr6	135418915	135418916	rs7776054	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	6q23.3	NR	rs7776054-G	0.261097	2E-110		0.04663	[0.043-0.051] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1618	chr6	135418915	135418916	rs7776054	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q23.3	NR	rs7776054-G	0.269247	1E-80				Affymetrix, Illumina [23467995] (imputed)	N
1618	chr6	135418915	135418916	rs7776054	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	6q23.3	NR	rs7776054-G	0.260831	6E-71		0.037905	[0.034-0.042] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1618	chr6	135418915	135418916	rs7776054	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	6q23.3	NR	rs7776054-G	0.260832	1E-77		0.04014	[0.036-0.044] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1618	chr6	135418915	135418916	rs7776054	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	6q23.3	NR	rs7776054-G	0.26107	4E-303		0.077954	[0.074-0.082] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
1618	chr6	135418915	135418916	rs7776054	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6q23.3	intergenic	rs7776054-G		3E-84		0.048	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
1618	chr6	135418915	135418916	rs7776054	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	6q23.3	HBS1L	rs7776054-A	0.738687	7E-12		0.0162915	[0.012-0.021] unit increase	Affymetrix [NR] (imputed)	N
1618	chr6	135418915	135418916	rs7776054	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	6q23.3	HBS1L	rs7776054-A	0.738689	1E-8		0.0135094	[0.0089-0.0182] unit increase	Affymetrix [NR] (imputed)	N
1618	chr6	135418915	135418916	rs7776054	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin concentration	108,728 Japanese ancestry individuals	NA	6q23.3	HBS1L, MYB	rs7776054-?	NR	1E-70		0.07997	[0.071-0.089] unit increase novel	Illumina [6108953] (imputed)	N
1618	chr6	135418915	135418916	rs7776054	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin	108,054 Japanese ancestry individuals	NA	6q23.3	HBS1L, MYB	rs7776054-?	NR	1E-376		0.1861	[0.18-0.19] unit increase novel	Illumina [6108953] (imputed)	N
1618	chr6	135418915	135418916	rs7776054	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Hemoglobin A1c levels	42,790 Japanese ancestry individuals	NA	6q23.3	HBS1L, MYB	rs7776054-?	NR	3E-18		0.06296	[0.049-0.077] unit decrease novel	Illumina [6108953] (imputed)	N
1618	chr6	135418915	135418916	rs7776054	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	LDL cholesterol levels	32,285 East Asian ancestry individuals, 173,082 European ancestry individuals	8,478 Chinese ancestry individuals	6q23.3	HBS1L	rs7776054-A	0.72	4E-8	(Asian initial, BMI unadjusted)	0.051	[0.033-0.069] unit increase	Affymetrix, Illumina [~ 1900000] (imputed)	N
1618	chr6	135418915	135418916	rs7776054	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular volume	up to 29,946 European ancestry individuals, up to 6150 African American individuals, 15,074 East Asian individuals.	16,389 individuals of European and African American ancestry.	6q23.3	HBS1L	rs7776054-?	NR	4E-119				NR [2500000] (imputed)	N
1618	chr6	135418915	135418916	rs7776054	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular hemoglobin concentration	up to 21,020 European ancestry individuals, up to 3,621 African American individuals, up to 15,062 East Asian individuals.	16,389 European and African American individuals.	6q23.3	HBS1L	rs7776054-?	NR	1E-8				NR [2500000] (imputed)	N
1618	chr6	135418915	135418916	rs7776054	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Hematocrit	up to 40,258 European ancestry individuals, up to 16,128 African American individuals, up to 15,252 East Asian ancestry individuals.	16,389 European and African American individuals	6q23.3	HBS1L	rs7776054-?	NR	1E-8				NR [2500000] (imputed)	N
1618	chr6	135418915	135418916	rs7776054	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	6q23.3	HBS1L	rs7776054-G	0.2606	1E-122		0.09491537	[0.087-0.103] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1618	chr6	135418915	135418916	rs7776054	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	6q23.3	HBS1L	rs7776054-G	0.2603	1E-469		0.1877004	[0.18-0.2] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1618	chr6	135418915	135418916	rs7776054	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	6q23.3	HBS1L	rs7776054-G	0.2605	5E-233		0.1357089	[0.13-0.14] unit increase	Affymetrix [~ 2500000] (imputed)	N
1618	chr6	135418915	135418916	rs7776054	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	6q23.3	HBS1L	rs7776054-G	0.2605	4E-181		0.1191713	[0.11-0.13] unit increase	Affymetrix [~ 2500000] (imputed)	N
1618	chr6	135418915	135418916	rs7776054	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	6q23.3	HBS1L	rs7776054-G	0.2603	3E-23		0.04041738	[0.032-0.048] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1618	chr6	135418915	135418916	rs7776054	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	6q23.3	HBS1L	rs7776054-G	0.2604	1E-560		0.2032018	[0.2-0.21] unit increase	Affymetrix [~ 2500000] (imputed)	N
1618	chr6	135418915	135418916	rs7776054	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin concentration	172,851 European ancestry individuals	NA	6q23.3	HBS1L	rs7776054-G	0.2603	2E-118		0.09130758	[0.084-0.099] unit increase	Affymetrix [~ 2500000] (imputed)	N
1618	chr6	135418915	135418916	rs7776054	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	6q23.3	HBS1L	rs7776054-G	0.2605	1E-628		0.2159334	[0.21-0.22] unit increase	Affymetrix [~ 2500000] (imputed)	N
1618	chr6	135418915	135418916	rs7776054	26366553	Danjou F	2015-09-14	Nat Genet	Genome-wide association analyses based on whole-genome sequencing in Sardinia provide insights into regulation of hemoglobin levels.	Hemoglobin levels	6,602 Sardinian founder individuals	4,131 European ancestry individuals	6q23.3	MYB	rs7776054-G	0.210	4E-19	(HbA2, Sardinian)	0.1762	[0.14-0.22] percentage increase	Illumina [~ 10900000] (imputed)	N
1618	chr6	135418915	135418916	rs7776054	23935956	Pistis G	2013-07-31	PLoS One	Genome wide association analysis of a founder population identified TAF3 as a gene for MCHC in humans.	Red blood cell traits	1,664 Val Borbera (founder/genetic isolate) individuals	619 Friuli Venezia Giulia (founder/genetic isolate) individuals, 16,145 European ancestry individuals	6q23.3	HBS1L, MYB	rs7776054-G	0.24	4E-6	(MCH)	0.0103	[0.0060-0.0146] unit increase	Illumina [~ 2500000] (imputed)	N
1618	chr6	135418915	135418916	rs7776054	19862010	Ganesh SK	2009-10-11	Nat Genet	Multiple loci influence erythrocyte phenotypes in the CHARGE Consortium.	Mean corpuscular hemoglobin	24,167 European ancestry individuals	9,456 European ancestry individuals	6q23.3	HBS1L, MYB	rs7776054-G	NR	7E-69		0.01	[0.009-0.0111] pg decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1618	chr6	135419017	135419018	rs9399137	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	6q23.3		rs9399137-C	0.346313	4E-182		0.0996945	[0.093-0.106] unit increase	Illumina [13478928] (imputed)	N
1618	chr6	135419017	135419018	rs9399137	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	6q23.3		rs9399137-C	NR	1E-265		0.0641	[0.061-0.068] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
1618	chr6	135419017	135419018	rs9399137	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	150,068 East Asian ancestry individuals	NA	6q23.3		rs9399137-C	0.347205	2E-11		0.0244695	[0.017-0.032] unit decrease	Illumina [13478956] (imputed)	N
1618	chr6	135419017	135419018	rs9399137	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Aspartate aminotransferase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	6q23.3	HBS1L, MYB	rs9399137-?		1E-9		0.0237	[0.016-0.031] unit decrease	Illumina [31500000] (imputed)	N
1618	chr6	135419017	135419018	rs9399137	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	126,151 East Asian ancestry individuals	NA	6q23.3	NR	rs9399137-T	0.65489	3E-90		0.084322	[0.076-0.093] SD units decrease	Affymetrix, Illumina [16289083] (imputed)	N
1618	chr6	135419017	135419018	rs9399137	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	8,181 South Asian ancestry individuals	NA	6q23.3	NR	rs9399137-T	0.876004	2E-11		0.159497	[0.11-0.21] SD units decrease	Affymetrix, Illumina [28486451] (imputed)	N
1618	chr6	135419017	135419018	rs9399137	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q23.3	NR	rs9399137-C	0.261294	4E-134				Affymetrix, Illumina [24653286] (imputed)	N
1618	chr6	135419017	135419018	rs9399137	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	6q23.3	NR	rs9399137-C	0.249054	2E-112		0.048392	[0.044-0.053] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
1618	chr6	135419017	135419018	rs9399137	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Platelet count	8,850 African American individuals, 18,949 Hispanic/Latino individuals, 541 Asian ancestry individuals, 603 Native American ancestry individuals, 385 individuals	NA	6q23.3	NR	rs9399137-?	NR	5E-17		6.367816	[4.88-7.86] unit increase	Illumina [30743395] (imputed)	N
1618	chr6	135419017	135419018	rs9399137	29483669	Appel EVR	2018-02-26	Eur J Hum Genet	Genetic determinants of glycated hemoglobin levels in the Greenlandic Inuit population.	Glycated hemoglobin levels	4,049 individuals	6,006 European ancestry individuals	6q23.3	HBS1L, MYB	rs9399137-C	0.26	4E-13		0.13	[0.097-0.163] unit decrease	Illumina [112277]	N
1618	chr6	135419017	135419018	rs9399137	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Platelet count	108,208 Japanese ancestry individuals	NA	6q23.3	HBS1L, MYB	rs9399137-?	NR	2E-121		0.1049	[0.096-0.114] unit increase novel	Illumina [6108953] (imputed)	N
1618	chr6	135419017	135419018	rs9399137	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular volume	108,256 Japanese ancestry individuals	NA	6q23.3	HBS1L, MYB	rs9399137-?	NR	1E-320		0.1718	[0.16-0.18] unit increase novel	Illumina [6108953] (imputed)	N
1618	chr6	135419017	135419018	rs9399137	26366553	Danjou F	2015-09-14	Nat Genet	Genome-wide association analyses based on whole-genome sequencing in Sardinia provide insights into regulation of hemoglobin levels.	Hemoglobin levels	6,602 Sardinian founder individuals	4,131 European ancestry individuals	6q23.3	MYB	rs9399137-C	0.205	1E-93	(HbF, Sardinian)	0.4202	[0.38-0.46] g/dl increase	Illumina [~ 10900000] (imputed)	N
1618	chr6	135419017	135419018	rs9399137	24647736	Chen P	2014-03-19	Diabetes	Multiple nonglycemic genomic loci are newly associated with blood level of glycated hemoglobin in East Asians.	Glycated hemoglobin levels	17,290 East Asian ancestry individuals, 1,727 Malay ancestry individuals	up to 13,585 East Asian ancestry individuals	6q23.3	HBS1L, MYB	rs9399137-T	0.69	9E-15		0.07	[0.050-0.090] unit increase	Affymetrix, Illumina [up to 2400000] (imputed)	N
1618	chr6	135419017	135419018	rs9399137	24026423	Shameer K	2013-09-12	Hum Genet	A genome- and phenome-wide association study to identify genetic variants influencing platelet count and volume and their pleiotropic effects.	Platelet count	13,582 European ancestry individuals	NA	6q23.3	HBS1L, MYB	rs9399137-T	NR	8E-10		5.51	[NR] unit decrease	Illumina [476395]	N
1618	chr6	135419017	135419018	rs9399137	23263863	Li J	2012-12-20	Hum Mol Genet	GWAS of blood cell traits identifies novel associated loci and epistatic interactions in Caucasian and African-American children.	Mean corpuscular volume	7,943 African American children, 6,234 European ancestry children	NA	6q23.3	HBS1L, MYB	rs9399137-T	NR	1E-11		0.5546	[0.39-0.71] unit decrease	Illumina [544917]	N
1618	chr6	135419017	135419018	rs9399137	23263863	Li J	2012-12-20	Hum Mol Genet	GWAS of blood cell traits identifies novel associated loci and epistatic interactions in Caucasian and African-American children.	Mean corpuscular hemoglobin	7,943 African American children, 6,234 European ancestry children	NA	6q23.3	HBS1L, MYB	rs9399137-T	NR	4E-15		0.2519	[0.19-0.31] unit decrease	Illumina [544917]	N
1618	chr6	135419017	135419018	rs9399137	23263863	Li J	2012-12-20	Hum Mol Genet	GWAS of blood cell traits identifies novel associated loci and epistatic interactions in Caucasian and African-American children.	Hematology traits	7,943 African American children, 6,234 European ancestry children	NA	6q23.3	HBS1L, MYB	rs9399137-T	NR	3E-6	(RBC)	0.0361	[0.021-0.051] unit increase	Illumina [544917]	N
1618	chr6	135419017	135419018	rs9399137	23043469	Menzel S	2012-10-09	Br J Haematol	HbA2 levels in normal adults are influenced by two distinct genetic mechanisms.	HbA2 levels	2,322 European ancestry individuals	1,716 European ancestry individuals	6q23.3	HBS1L, MYB	rs9399137-C	0.26	5E-9				Illumina [531038]	N
1618	chr6	135419017	135419018	rs9399137	22139419	Gieger C	2011-11-30	Nature	New gene functions in megakaryopoiesis and platelet formation.	Platelet count	38,891 European ancestry individuals, 1,661 Val Borbera (founder/genetic isolate) individuals, 521 Carlantino (founder/genetic isolate) individuals, 1,198 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,213 South Tyrolean (founder/genetic isolate) individuals, 890 Sorbian (founder/genetic isolate) individuals, 4,292 Sardinian (founder/genetic isolate) individuals	Up to 16,949 European ancestry individuals, 854 Cliento (founder/genetic isolate) individuals, 1,035 Talana (founder/genetic isolate) individuals	6q23.3	HBS1L, MYB	rs9399137-C	NR	5E-47		5.901	[5.1-6.7] 10^9/l increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1618	chr6	135419017	135419018	rs9399137	19853236	Ferreira MA	2009-10-22	Am J Hum Genet	Sequence variants in three loci influence monocyte counts and erythrocyte volume.	Platelet count	2,538 European ancestry individuals, 3,477 individuals	1,543 individuals	6q23.3	HBS1L, MYB	rs9399137-T	0.74	1E-9		0.16	[0.10-0.22] s.d. decrease	Illumina, Perlegen [~ 2500000] (imputed)	N
1618	chr6	135419017	135419018	rs9399137	17767159	Menzel S	2007-09-02	Nat Genet	A QTL influencing F cell production maps to a gene encoding a zinc-finger protein on chromosome 2p15.	F-cell distribution	179 European ancestry individuals	90 European ancestry individuals	6q23.3	intergenic	rs9399137-?	0.23	3E-36		15.8	[NR] % variance	Illumina [308015]	N
1618	chr6	135419038	135419039	rs56293029	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Forns index in high alcohol intake	33,437 British ancestry individuals	NA	6q23.3		rs56293029-?	0.2526	1E-14		0.004226	unit decrease	NR [6200000] (imputed)	N
1618	chr6	135419038	135419039	rs56293029	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Fibrosis-4 index in high alcohol intake	33,324 British ancestry individuals	NA	6q23.3		rs56293029-?	0.2526	2E-22		0.01257	unit decrease	NR [6200000] (imputed)	N
1618	chr6	135419038	135419039	rs56293029	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Aspartate aminotransferase platelet ratio index in high alcohol intake	33,330 British ancestry individuals	NA	6q23.3		rs56293029-?	0.2526	1E-14		0.0123	unit decrease	NR [6200000] (imputed)	N
1618	chr6	135419039	135419040	rs34778774	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	6q23.3		rs34778774-A	NR	1E-90		0.0443	[0.04-0.049] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1618	chr6	135419039	135419040	rs34778774	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	6q23.3		rs34778774-A	NR	8E-544		0.1064	[0.1-0.11] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1618	chr6	135419039	135419040	rs34778774	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	6q23.3		rs34778774-A	NR	2E-43		0.0334	[0.029-0.038] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
1618	chr6	135419039	135419040	rs34778774	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	6q23.3		rs34778774-A	NR	8E-48		0.034	[0.029-0.039] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
1618	chr6	135419039	135419040	rs34778774	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	135,482 East Asian ancestry individuals	NA	6q23.3		rs34778774-A	0.346069	6E-94		0.0779676	[0.071-0.085] unit increase	Illumina [13477028] (imputed)	N
1618	chr6	135419041	135419042	rs35786788	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	6q23.3		rs35786788-A	NR	5E-1238		0.1443	[0.14-0.15] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
1618	chr6	135419041	135419042	rs35786788	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	6q23.3		rs35786788-A	NR	7E-1313		0.1719	[0.17-0.18] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
1618	chr6	135419041	135419042	rs35786788	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	6q23.3		rs35786788-A	NR	7E-1644		0.1925	[0.19-0.2] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
1618	chr6	135419041	135419042	rs35786788	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	6q23.3		rs35786788-A	NR	1E-108		0.0403	[0.037-0.044] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
1618	chr6	135419041	135419042	rs35786788	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6q23.3	HBS1L	rs35786788-A	0.252992	2E-15		0.06530618	[0.049-0.081] unit increase	Affymetrix [93095623] (imputed)	N
1618	chr6	135419041	135419042	rs35786788	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	145,648 East Asian ancestry individuals	NA	6q23.3	NR	rs35786788-G	0.657771	6E-166		0.107202	[0.1-0.115] SD units decrease	Affymetrix, Illumina [16710488] (imputed)	N
1618	chr6	135419041	135419042	rs35786788	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red cell distribution width	9,611 European ancestry individuals	NA	6q23.3		rs35786788-?	0.739	7E-9		0.1366	[0.09-0.183] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
1618	chr6	135419041	135419042	rs35786788	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red cell distribution width	6,141 African American individuals, 17,272 Hispanic or Latin American individuals, 9,611 European ancestry individuals, 123 Asian ancestry individuals, 20 Native American ancestry individuals, 382 individuals	NA	6q23.3		rs35786788-?	0.7839	2E-16		0.0827	[0.063-0.102] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
1618	chr6	135419041	135419042	rs35786788	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red cell distribution width	17,272 Hispanic or Latin American individuals	NA	6q23.3		rs35786788-?	0.8481	4E-6		0.0685	[0.039-0.098] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
1618	chr6	135419041	135419042	rs35786788	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red blood cell traits (multivariate analysis)	29,513 European ancestry individuals	NA	6q23.3	NR	rs35786788-?	0.74	1E-11				Affymetrix, Illumina [21000000] (imputed)	N
1618	chr6	135419041	135419042	rs35786788	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red blood cell traits (multivariate analysis)	20,697 Hispanic or Latin American individuals	NA	6q23.3	NR	rs35786788-?	0.85	1E-11				Affymetrix, Illumina [21000000] (imputed)	N
1618	chr6	135419041	135419042	rs35786788	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red blood cell traits (multivariate analysis)	16,802 African American individuals	NA	6q23.3	NR	rs35786788-?	0.92	8E-7				Affymetrix, Illumina [21000000] (imputed)	N
1618	chr6	135419041	135419042	rs35786788	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red blood cell count	8,679 African American individuals, 17,412 Hispanic or Latin American individuals, 14,690 European ancestry individuals, 127 Asian ancestry individuals, 20 Native American ancestry individuals, 382 individuals	NA	6q23.3		rs35786788-?	0.7839	3E-60		0.0611	[0.054-0.068] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
1618	chr6	135419041	135419042	rs35786788	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red blood cell count	17,412 Hispanic or Latin American individuals	NA	6q23.3		rs35786788-?	0.8481	1E-22		0.059	[0.047-0.071] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
1618	chr6	135419041	135419042	rs35786788	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red blood cell count	14,690 European ancestry individuals	NA	6q23.3		rs35786788-?	0.739	3E-38		0.0625	[0.053-0.072] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
1618	chr6	135419041	135419042	rs35786788	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular volume	8,556 African American individuals, 17,141 Hispanic or Latin American individuals, 14,483 European ancestry individuals, 125 Asian ancestry individuals, 594 Native American ancestry individuals, 377 individuals	NA	6q23.3		rs35786788-?	0.7839	1E-59		0.7814	[0.69-0.88] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
1618	chr6	135419041	135419042	rs35786788	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular volume	17,141 Hispanic or Latin American individuals	NA	6q23.3		rs35786788-?	0.8481	4E-9		0.5334	[0.36-0.71] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
1618	chr6	135419041	135419042	rs35786788	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular volume	14,483 European ancestry individuals	NA	6q23.3		rs35786788-?	0.739	8E-51		0.8698	[0.76-0.98] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
1618	chr6	135419041	135419042	rs35786788	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin concentration	29,587 European ancestry individuals	NA	6q23.3		rs35786788-?	0.739	4E-7		0.0442	[0.027-0.061] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
1618	chr6	135419041	135419042	rs35786788	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin concentration	16,353 African American individuals, 20,877 Hispanic or Latin American individuals, 29,587 European ancestry individuals, 635 Asian ancestry individuals, 20 Native American ancestry individuals, 384 individuals	NA	6q23.3		rs35786788-?	0.7839	6E-10		0.045	[0.031-0.059] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
1618	chr6	135419041	135419042	rs35786788	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin	8,694 African American individuals, 17,400 Hispanic or Latin American individuals, 14,693 European ancestry individuals, 127 Asian ancestry individuals, 20 Native American ancestry individuals, 382 individuals	NA	6q23.3		rs35786788-?	0.7839	3E-66		0.3173	[0.28-0.35] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
1618	chr6	135419041	135419042	rs35786788	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin	17,400 Hispanic or Latin American individuals	NA	6q23.3		rs35786788-?	0.8481	1E-12		0.2348	[0.17-0.3] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
1618	chr6	135419041	135419042	rs35786788	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin	14,693 European ancestry individuals	NA	6q23.3		rs35786788-?	0.739	1E-53		0.3501	[0.31-0.39] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
1618	chr6	135419041	135419042	rs35786788	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Hemoglobin concentration	29,379 European ancestry individuals	NA	6q23.3		rs35786788-?	0.739	4E-8		0.0499	[0.032-0.068] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
1618	chr6	135419041	135419042	rs35786788	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Hemoglobin concentration	16,186 African American individuals, 20,692 Hispanic or Latin American individuals, 29,379 European ancestry individuals, 630 Asian ancestry individuals, 601 Native American ancestry individuals, 381 individuals	NA	6q23.3		rs35786788-?	0.7839	7E-11		0.0494	[0.035-0.064] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
1618	chr6	135419041	135419042	rs35786788	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Hematocrit	29,383 European ancestry individuals	NA	6q23.3		rs35786788-?	0.739	9E-14		0.2012	[0.15-0.25] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
1618	chr6	135419041	135419042	rs35786788	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Hematocrit	20,704 Hispanic or Latin American individuals	NA	6q23.3		rs35786788-?	0.8481	3E-6		0.2122	[0.12-0.3] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
1618	chr6	135419041	135419042	rs35786788	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Hematocrit	16,184 African American individuals, 20,704 Hispanic or Latin American individuals, 29,383 European ancestry individuals, 631 Asian ancestry individuals, 601 Native American ancestry individuals, 381 individuals	NA	6q23.3		rs35786788-?	0.7839	9E-20		0.2029	[0.16-0.25] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
1618	chr6	135419041	135419042	rs35786788	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6q23.3	NR	rs35786788-G	NR	4E-17		0.041	unit increase	Affymetrix [at least 7091467] (imputed)	N
1618	chr6	135419041	135419042	rs35786788	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6q23.3	NR	rs35786788-G	0.742	3E-16	(EA)	0.043	unit increase	Affymetrix [at least 7091467] (imputed)	N
1618	chr6	135419041	135419042	rs35786788	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6q23.3	NR	rs35786788-G	NR	7E-15		0.038	unit increase	Affymetrix [at least 7091467] (imputed)	N
1618	chr6	135419041	135419042	rs35786788	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6q23.3	NR	rs35786788-G	0.742	2E-14	(EA)	0.041	unit increase	Affymetrix [at least 7091467] (imputed)	N
1618	chr6	135419480	135419481	rs35874523	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	6q23.3	HBS1L	rs35874523-C	0.521997	3E-19		0.024336983	[0.019-0.03] unit increase	Affymetrix [93095623] (imputed)	N
1618	chr6	135419630	135419631	rs9389268	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein EPO	5,365 Icelandic ancestry individuals	NA	6q23.3		rs9389268-G	0.2782	6E-22		0.200563	[0.16-0.24] unit increase	Illumina [7506463] (imputed)	N
1618	chr6	135419630	135419631	rs9389268	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	6q23.3		rs9389268-G	NR	1E-46		0.0336	[0.029-0.038] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
1618	chr6	135419630	135419631	rs9389268	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	6q23.3		rs9389268-G	NR	8E-74		0.0411	[0.037-0.046] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
1618	chr6	135419630	135419631	rs9389268	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	6q23.3		rs9389268-G	NR	3E-73		0.0334	[0.03-0.037] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
1618	chr6	135419630	135419631	rs9389268	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	33,307 East Asian ancestry individuals	NA	6q23.3	HBS1L	rs9389268-A	0.7101	4E-15		0.0251	[0.019-0.031] unit increase	Affymetrix, Illumina [15728197] (imputed)	N
1618	chr6	135419630	135419631	rs9389268	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	9,302 Hispanic or Latin American individuals	NA	6q23.3	NR	rs9389268-A	0.817459	2E-12		0.142701	[0.1-0.18] SD units increase	Affymetrix, Illumina [26810348] (imputed)	N
1618	chr6	135419630	135419631	rs9389268	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	6q23.3	NR	rs9389268-G	0.2561	4E-87		0.045367	[0.041-0.05] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
1618	chr6	135419630	135419631	rs9389268	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	6q23.3	HBS1L	rs9389268-?	NR	3E-15		0.0231	[0.018-0.028] unit decrease	Affymetrix [5701386] (imputed)	N
1618	chr6	135419630	135419631	rs9389268	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Aspartate aminotransferase levels	134,154 Japanese ancestry individuals	NA	6q23.3	HBS1L, MYB	rs9389268-?	NR	4E-9		0.02333	[0.016-0.031] unit decrease novel	Illumina [6108953] (imputed)	N
1618	chr6	135419630	135419631	rs9389268	28453575	Hodonsky CJ	2017-04-28	PLoS Genet	Genome-wide association study of red blood cell traits in Hispanics/Latinos: The Hispanic Community Health Study/Study of Latinos.	Mean corpuscular volume	12,502 Hispanic/Latino individuals	4,772 Hispanic/Latino individuals	6q23.3	HBS1L, MYB	rs9389268-A	0.83	3E-9		0.58	[0.38-0.78] fL decrease	Illumina [27801688] (imputed)	N
1618	chr6	135419630	135419631	rs9389268	28453575	Hodonsky CJ	2017-04-28	PLoS Genet	Genome-wide association study of red blood cell traits in Hispanics/Latinos: The Hispanic Community Health Study/Study of Latinos.	Mean corpuscular hemoglobin	12,502 Hispanic/Latino individuals	4,772 Hispanic/Latino individuals	6q23.3	MYB, HBS1L	rs9389268-A	0.83	8E-10		0.22	[0.14-0.30] pg decrease	Illumina [27801688] (imputed)	N
1618	chr6	135419630	135419631	rs9389268	28031487	Guo MH	2016-12-28	Proc Natl Acad Sci U S A	Comprehensive population-based genome sequencing provides insight into hematopoietic regulatory mechanisms.	Mean corpuscular volume	6,891 European ancestry individuals	NA	6q23.3	HBS1L, MYB	rs9389268-?	0.304	1E-13		0.19	[NR] fL increase	NR [16536512] (imputed)	N
1618	chr6	135419635	135419636	rs9376091	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Lactate levels	114,806 European ancestry individuals	NA	6q23.3		rs9376091-C	0.739507	1E-13		0.0352484	[0.026-0.045] unit decrease	NR [11722792] (imputed)	N
1618	chr6	135419635	135419636	rs9376091	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	95,119 East Asian ancestry individuals	NA	6q23.3		rs9376091-T	0.344655	1E-10		0.0296828	[0.021-0.039] unit decrease	Illumina [13471440] (imputed)	N
1618	chr6	135419635	135419636	rs9376091	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	6q23.3	HBS1L	rs9376091-T	0.259959	8E-54		0.040054474	[0.035-0.045] unit decrease	Affymetrix [93095623] (imputed)	N
1618	chr6	135419635	135419636	rs9376091	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	88,929 East Asian ancestry individuals	NA	6q23.3	NR	rs9376091-C	0.65484	1E-13		0.037231	[0.027-0.047] SD units increase	Affymetrix, Illumina [16289044] (imputed)	N
1618	chr6	135419635	135419636	rs9376091	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	6q23.3	NR	rs9376091-T	0.25505	1E-398		0.099028	[0.094-0.104] SD unit increase	Affymetrix, Illumina [50282193] (imputed)	N
1618	chr6	135419635	135419636	rs9376091	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q23.3	NR	rs9376091-T	0.265134	2E-114				Affymetrix, Illumina [19872809] (imputed)	N
1618	chr6	135419635	135419636	rs9376091	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	6q23.3		rs9376091-?	NR	2E-86				NR [~ 8900000] (imputed)	N
1618	chr6	135419635	135419636	rs9376091	28031487	Guo MH	2016-12-28	Proc Natl Acad Sci U S A	Comprehensive population-based genome sequencing provides insight into hematopoietic regulatory mechanisms.	Red blood cell count	7,113 European ancestry individuals	NA	6q23.3	MYB, HBS1L	rs9376091-?	0.304	7E-12		0.021	[NR] 1,000,000/?L decrease	NR [16536512] (imputed)	N
1618	chr6	135419687	135419688	rs9402685	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls, 33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	6q23.3		rs9402685-C	NR	2E-10		0.0338	[0.023-0.044] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1618	chr6	135419687	135419688	rs9402685	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	6q23.3		rs9402685-C	0.34587	2E-420		0.164362	[0.16-0.17] unit increase	Illumina [13476266] (imputed)	N
1618	chr6	135419687	135419688	rs9402685	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	6q23.3		rs9402685-C	0.346108	1E-496		0.180529	[0.17-0.19] unit increase	Illumina [13476299] (imputed)	N
1618	chr6	135419687	135419688	rs9402685	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q23.3	NR	rs9402685-C	0.265227	2E-57				Affymetrix, Illumina [23114412] (imputed)	N
1618	chr6	135419687	135419688	rs9402685	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	6q23.3	NR	rs9402685-C	0.256024	1E-52		0.033846	[0.03-0.038] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
1618	chr6	135419687	135419688	rs9402685	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	8,188 South Asian ancestry individuals	NA	6q23.3	NR	rs9402685-T	0.869531	1E-9		0.140434	[0.095-0.186] SD units decrease	Affymetrix, Illumina [28492174] (imputed)	N
1618	chr6	135419687	135419688	rs9402685	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q23.3	NR	rs9402685-C	0.272965	6E-484				Affymetrix, Illumina [21126107] (imputed)	N
1618	chr6	135421067	135421068	rs34208856	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6q23.3	HBS1L	rs34208856-C	0.272544	2E-62		0.041876674	[0.037-0.047] unit decrease	Affymetrix [93095623] (imputed)	N
1618	chr6	135421067	135421068	rs34208856	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	6q23.3	HBS1L	rs34208856-?	0.2988	7E-21		0.0322	[0.026-0.039] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1618	chr6	135421067	135421068	rs34208856	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	6q23.3	HBS1L	rs34208856-C	0.2696	7E-32		0.04813201	[0.04-0.056] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1618	chr6	135421067	135421068	rs34208856	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	6q23.3	HBS1L	rs34208856-C	0.2697	9E-19		0.03624577	[0.028-0.044] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1618	chr6	135421067	135421068	rs34208856	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	6q23.3	HBS1L	rs34208856-C	0.2696	2E-16		0.03364815	[0.026-0.042] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1618	chr6	135421067	135421068	rs34208856	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	6q23.3	HBS1L	rs34208856-C	0.2696	1E-16		0.03393884	[0.026-0.042] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1618	chr6	135421067	135421068	rs34208856	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	6q23.3	HBS1L	rs34208856-C	0.2695	5E-21		0.0386862	[0.031-0.047] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1618	chr6	135421067	135421068	rs34208856	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	6q23.3	HBS1L	rs34208856-C	0.2696	2E-18		0.03593464	[0.028-0.044] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1618	chr6	135421175	135421176	rs34164109	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Pyruvate levels	114,749 European ancestry individuals	NA	6q23.3		rs34164109-C	0.738649	3E-8		0.0260697	[0.017-0.035] unit increase	NR [11722792] (imputed)	N
1618	chr6	135421175	135421176	rs34164109	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	154,355 East Asian ancestry individuals	NA	6q23.3		rs34164109-T	0.347034	2E-28		0.039485	[0.032-0.046] unit decrease	Illumina [13479091] (imputed)	N
1618	chr6	135421175	135421176	rs34164109	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	6q23.3		rs34164109-T	NR	1E-277		0.0783	[0.074-0.083] unit increase	Affymetrix, Illumina [20536605] (imputed)	N
1618	chr6	135421175	135421176	rs34164109	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6q23.3		rs34164109-C	0.739	5E-249				Affymetrix [10369434] (imputed)	N
1618	chr6	135421175	135421176	rs34164109	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	6q23.3	HBS1L	rs34164109-T	0.260914	4E-489		0.16199048	[0.16-0.17] unit increase	Affymetrix [93095623] (imputed)	N
1618	chr6	135421175	135421176	rs34164109	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	6q23.3	HBS1L	rs34164109-T	0.260816	3E-340		0.103696	[0.099-0.109] unit increase	Affymetrix [93095623] (imputed)	N
1618	chr6	135421175	135421176	rs34164109	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q23.3	NR	rs34164109-T	0.260821	5E-81				Affymetrix, Illumina [23472807] (imputed)	N
1618	chr6	135421175	135421176	rs34164109	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q23.3	NR	rs34164109-T	0.266373	8E-366				Affymetrix, Illumina [24558453] (imputed)	N
1618	chr6	135421175	135421176	rs34164109	28453575	Hodonsky CJ	2017-04-28	PLoS Genet	Genome-wide association study of red blood cell traits in Hispanics/Latinos: The Hispanic Community Health Study/Study of Latinos.	Red blood cell count	12,502 Hispanic/Latino individuals	4,772 Hispanic/Latino individuals	6q23.3	HBS1L, MYB	rs34164109-C	0.84	4E-17		0.054	[0.034-0.074] cells x E9 increase	Illumina [27801688] (imputed)	N
1618	chr6	135421175	135421176	rs34164109	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	6q23.3	HBS1L	rs34164109-T	0.2465	2E-30		0.04989433	[0.041-0.058] unit increase	Affymetrix [~ 2500000] (imputed)	N
1618	chr6	135422295	135422296	rs11759553	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q23.3	NR	rs11759553-T	0.291908	1E-815				Affymetrix, Illumina [24588908] (imputed)	N
1618	chr6	135423208	135423209	rs9373124	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	6q23.3		rs9373124-C	NR	8E-16		0.0181	[0.014-0.022] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
1618	chr6	135423208	135423209	rs9373124	28031487	Guo MH	2016-12-28	Proc Natl Acad Sci U S A	Comprehensive population-based genome sequencing provides insight into hematopoietic regulatory mechanisms.	Mean corpuscular hemoglobin	6,883 European ancestry individuals	NA	6q23.3	HBS1L, MYB	rs9373124-?	0.308	7E-14		0.073	[NR] pg increase	NR [16536512] (imputed)	N
1618	chr6	135423208	135423209	rs9373124	21738478	Okada Y	2011-06-30	PLoS Genet	Identification of nine novel loci associated with white blood cell subtypes in a Japanese population.	White blood cell types	8,794 Japanese ancestry individuals	5,998 Japanese ancestry individuals	6q23.3	HBS1L, MYB	rs9373124-T	0.65	1E-10	(eosinophil count)	0.08	[0.06-0.10] unit increase	Illumina [2178645] (imputed)	N
1618	chr6	135423208	135423209	rs9373124	19862010	Ganesh SK	2009-10-11	Nat Genet	Multiple loci influence erythrocyte phenotypes in the CHARGE Consortium.	Other erythrocyte phenotypes	24,167 European ancestry individuals	9,456 European ancestry individuals	6q23.3	HBS1L, MYB	rs9373124-C	NR	7E-14	(MCHC)	0.0	[0.002-0.003] g/dl decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1618	chr6	135424178	135424179	rs35959442	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6q23.3	HBS1L	rs35959442-G	0.272103	1E-44		0.036680203	[0.032-0.042] unit decrease	Affymetrix [93095623] (imputed)	N
1618	chr6	135424178	135424179	rs35959442	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	6q23.3	HBS1L	rs35959442-G	0.2707	5E-20		0.0366371	[0.029-0.044] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1618	chr6	135426557	135426558	rs4895440	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6q23.3	HBS1L	rs4895440-T	0.273301	2E-12		0.054670855	[0.039-0.07] unit increase	Affymetrix [93095623] (imputed)	N
1618	chr6	135426572	135426573	rs4895441	35023831	Chong M	2022-01-13	Elife	GWAS and ExWAS of blood Mitochondrial DNA copy number identifies 71 loci and highlights a potential causal role in dementia.	Mitochondrial DNA copy number	395,718 British, Irish, Other White, South Asian, African ancestry individuals	NA	6q23.3	NR	rs4895441-G	0.175319	8E-14		0.0177	[0.013-0.022] unit increase	Affymetrix [23037915] (imputed)	N
1618	chr6	135426572	135426573	rs4895441	33385171	Hagg S	2020-12-31	Hum Genet	Deciphering the genetic and epidemiological landscape of mitochondrial DNA abundance.	Mitochondrial DNA levels	295,150 European ancestry individuals	NA	6q23.3	NR	rs4895441-G	0.2734	9E-28		0.031499	[0.026-0.037] unit increase	Affymetrix [3505788] (imputed)	N
1618	chr6	135426572	135426573	rs4895441	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q23.3	NR	rs4895441-G	0.285992	2E-1754				Affymetrix, Illumina [24332387] (imputed)	N
1618	chr6	135426572	135426573	rs4895441	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Platelet count	8,850 African American individuals, 18,949 Hispanic/Latino individuals, 541 Asian ancestry individuals, 603 Native American ancestry individuals, 385 individuals	NA	6q23.3	NR	rs4895441-?	NR	2E-16		5.664745	[4.31-7.02] unit increase	Illumina [30743395] (imputed)	N
1618	chr6	135426572	135426573	rs4895441	26805783	Schick UM	2016-01-21	Am J Hum Genet	Genome-wide Association Study of Platelet Count Identifies Ancestry-Specific Loci in Hispanic/Latino Americans.	Platelet count	12,491 Hispanic/Latin American individuals	7,170 Hispanic/Latin American individuals	6q23.3	HBS1L, MYB	rs4895441-A	0.82	1E-7		5.39	[3.39-7.39] unit decrease	Illumina [2232944] (imputed)	N
1618	chr6	135426572	135426573	rs4895441	25096241	Keller MF	2014-08-05	Hum Mol Genet	Trans-ethnic meta-analysis of white blood cell phenotypes.	White blood cell count	16,843 Japanese ancestry individuals, 19,509 European ancestry individuals, 16,388 African American individuals	NA	6q23.3	intergenic	rs4895441-A	0.628	9E-11	(Japanese)	0.018	[0.012-0.024] unit increase	Illumina [NR] (imputed)	N
1618	chr6	135426572	135426573	rs4895441	23935956	Pistis G	2013-07-31	PLoS One	Genome wide association analysis of a founder population identified TAF3 as a gene for MCHC in humans.	Red blood cell traits	1,664 Val Borbera (founder/genetic isolate) individuals	619 Friuli Venezia Giulia (founder/genetic isolate) individuals, 16,145 European ancestry individuals	6q23.3	HBS1L, MYB	rs4895441-G	0.26	3E-6	(MCV)	0.0088	[0.0051-0.0125] unit increase	Illumina [~ 2500000] (imputed)	N
1618	chr6	135426572	135426573	rs4895441	23263863	Li J	2012-12-20	Hum Mol Genet	GWAS of blood cell traits identifies novel associated loci and epistatic interactions in Caucasian and African-American children.	Mean corpuscular hemoglobin concentration	7,943 African American children, 6,234 European ancestry children	NA	6q23.3	HBS1L, MYB	rs4895441-A	NR	3E-6		0.0928	[0.054-0.132] unit decrease	Illumina [544917]	N
1618	chr6	135426572	135426573	rs4895441	20139978	Kamatani Y	2010-02-07	Nat Genet	Genome-wide association study of hematological and biochemical traits in a Japanese population.	White blood cell count	14,677 Japanese ancestry individuals	NA	6q23.3	HBS1L, MYB	rs4895441-G	0.37	2E-9		0.073	[0.049-0.097] unit decrease	Illumina [561583]	N
1618	chr6	135426572	135426573	rs4895441	19862010	Ganesh SK	2009-10-11	Nat Genet	Multiple loci influence erythrocyte phenotypes in the CHARGE Consortium.	Mean corpuscular volume	24,167 European ancestry individuals	9,456 European ancestry individuals	6q23.3	HBS1L, MYB	rs4895441-G	NR	7E-86		0.01	[0.007-0.009] fl decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1618	chr6	135427143	135427144	rs9376092	25849990	Tapper W	2015-04-07	Nat Commun	Genetic variation at MECOM, TERT, JAK2 and HBS1L-MYB predisposes to myeloproliferative neoplasms.	Myeloproliferative neoplasms	524 European ancestry JAK2 negative cases, 2,674 European ancestry controls	1,383 European ancestry JAK2 negative cases, 4,609 European ancestry controls, 526 JAK2 negative cases, 5,506 controls	6q23.3	HBS1L, MYB	rs9376092-A	0.27	5E-6		1.18	[1.10-1.26]	Affymetrix [2098039] (imputed)	N
1618	chr6	135427143	135427144	rs9376092	20183929	Nuinoon M	2009-11-19	Hum Genet	A genome-wide association identified the common genetic variants  influence disease severity in beta0-thalassemia/hemoglobin E.	Beta thalassemia/hemoglobin E disease	235 Thai-Chinese ancestry mild cases, 383 Thai-Chinese ancestry severe cases	52 Indonesian ancestry mild cases, 122 Indonesian ancestry severe cases	6q23.3	HBS1L, MYB	rs9376092-?	0.23	2E-11		2.91	[2.12-3.99]	Illumina [548094]	N
1618	chr6	135427158	135427159	rs9389269	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Forns index in high alcohol intake	33,437 British ancestry individuals	NA	6q23.3		rs9389269-?	0.2729	7E-15		0.004111	unit decrease	NR [6200000] (imputed)	N
1618	chr6	135427158	135427159	rs9389269	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Fibrosis-4 index in high alcohol intake	33,324 British ancestry individuals	NA	6q23.3		rs9389269-?	0.2729	1E-21		0.01184	unit decrease	NR [6200000] (imputed)	N
1618	chr6	135427158	135427159	rs9389269	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Aspartate aminotransferase platelet ratio index in high alcohol intake	33,330 British ancestry individuals	NA	6q23.3		rs9389269-?	0.2729	5E-14		0.01158	unit decrease	NR [6200000] (imputed)	N
1618	chr6	135427158	135427159	rs9389269	23222517	van der Harst P	2012-12-05	Nature	Seventy-five genetic loci influencing the human red blood cell.	Red blood cell traits	62,553 European ancestry individuals, 9,308 South Asian ancestry individuals	63,506 European ancestry individuals	6q23.3	HBS1L	rs9389269-T	0.72	3E-19	(EA, MCV)	0.6	[0.55-0.65] unit decrease	Affymetrix, Illumina, Perlegen [2711806] (imputed)	N
1618	chr6	135427816	135427817	rs9402686	34553764	Little A	2021-09-06	Hum Mol Genet	Whole genome sequence analysis of platelet traits in the NHLBI trans-omics for precision medicine initiative.	Platelet count	14,392 African American individuals, 13,985 Hispanic or Latin American individuals, 32,129 European ancestry individuals, 681 East Asian ancestry individuals, 13 individuals	10,664 individuals, 10,694 African American individuals, 7,287 Hispanic or Latin American individuals, 7,857 African ancestry individuals	6q23.3		rs9402686-A	0.197492	7E-39		6.188954	[5.26-7.12] unit increase	NR [NR]	N
1618	chr6	135427816	135427817	rs9402686	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	6q23.3		rs9402686-A	0.2725	1E-11		0.10677447	[0.076-0.138] mmHg decrease	Affymetrix, Illumina [242866] (imputed)	N
1618	chr6	135427816	135427817	rs9402686	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	6q23.3	HBS1L	rs9402686-A	0.271464	3E-457		0.12064231	[0.12-0.13] unit increase	Affymetrix [93095623] (imputed)	N
1618	chr6	135427816	135427817	rs9402686	31194788	Read RW	2019-06-13	PLoS One	GWAS and PheWAS of red blood cell components in a Northern Nevadan cohort.	Mean corpuscular volume	Up to 53 African American individuals, 100 Asian ancestry individuals, 4,175 European ancestry individuals, 138 Hispanic or Latin American individuals, 30 Native American individuals, 11 Pacific Islander ancestry individuals, 168 unknown ancestry individuals	NA	6q23.3	Intergenic	rs9402686-A	0.2489	5E-10		0.647	[0.44-0.85] fL increase	Illumina [498916]	N
1618	chr6	135427816	135427817	rs9402686	25096241	Keller MF	2014-08-05	Hum Mol Genet	Trans-ethnic meta-analysis of white blood cell phenotypes.	White blood cell count	16,843 Japanese ancestry individuals, 19,509 European ancestry individuals, 16,388 African American individuals	NA	6q23.3	NR	rs9402686-?	NR	4E-12		0.0138	[0.0099-0.0177] unit decrease	Illumina [NR] (imputed)	N
1618	chr6	135427816	135427817	rs9402686	19820697	Soranzo N	2009-10-11	Nat Genet	A genome-wide meta-analysis identifies 22 loci associated with eight hematological parameters in the HaemGen consortium.	Hematological parameters	4,627 European ancestry individuals	9,316 European ancestry individuals	6q23.3	HBS1L, MYB	rs9402686-A	NR	7E-42	(MCV)	0.82	[0.70-0.94] fl increase	Affymetrix, Illumina [~ 2110000] (imputed)	N
1618	chr6	135428536	135428537	rs7758845	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	6q23.3	NR	rs7758845-A	0.728398	2E-440		0.094576	[0.09-0.099] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
1618	chr6	135431317	135431318	rs6920211	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6q23.3		rs6920211-T	0.747	1E-28				Affymetrix [10369434] (imputed)	N
1618	chr6	135431317	135431318	rs6920211	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6q23.3		rs6920211-T	0.747	2E-12				Affymetrix [10369434] (imputed)	N
1618	chr6	135431317	135431318	rs6920211	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	6q23.3		rs6920211-?	NR	2E-80				NR [~ 8900000] (imputed)	N
1618	chr6	135431317	135431318	rs6920211	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	6q23.3	intergenic	rs6920211-C	0.2508	2E-16		0.03382095	[0.026-0.042] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1618	chr6	135431639	135431640	rs9494142	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	6q23.3		rs9494142-C	0.251178	3E-9		0.0339758	[0.023-0.045] unit decrease	Affymetrix [93095623] (imputed)	N
1618	chr6	135431639	135431640	rs9494142	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	6q23.3		rs9494142-C	0.251307	2E-10		0.037887286	[0.026-0.05] unit increase	Affymetrix [93095623] (imputed)	N
1618	chr6	135431639	135431640	rs9494142	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	6q23.3		rs9494142-C	0.251277	9E-12		0.183006	[0.18-0.19] unit increase	Affymetrix [93095623] (imputed)	N
1618	chr6	135431639	135431640	rs9494142	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	6q23.3		rs9494142-C	0.251314	8E-11		0.036467753	[0.025-0.047] unit increase	Affymetrix [93095623] (imputed)	N
1618	chr6	135431639	135431640	rs9494142	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	8,188 South Asian ancestry individuals	NA	6q23.3	NR	rs9494142-T	0.875745	1E-13		0.176735	[0.13-0.22] SD units decrease	Affymetrix, Illumina [28492373] (imputed)	N
1618	chr6	135431639	135431640	rs9494142	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	9,298 Hispanic or Latin American individuals	NA	6q23.3	NR	rs9494142-T	0.799655	3E-12		0.130247	[0.094-0.167] SD units decrease	Affymetrix, Illumina [26810224] (imputed)	N
1618	chr6	135431639	135431640	rs9494142	28031487	Guo MH	2016-12-28	Proc Natl Acad Sci U S A	Comprehensive population-based genome sequencing provides insight into hematopoietic regulatory mechanisms.	Platelet count	2,083 European ancestry individuals	NA	6q23.3	HBS1L, MYB	rs9494142-?	0.254	8E-9		5.3	[NR] 1,000/?L increase	NR [16536512] (imputed)	N
1618	chr6	135431639	135431640	rs9494142	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	6q23.3	intergenic	rs9494142-C	0.2496	1E-508		0.1963728	[0.19-0.2] unit increase	Affymetrix [~ 2500000] (imputed)	N
1618	chr6	135431639	135431640	rs9494142	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	6q23.3	intergenic	rs9494142-C	0.2496	1E-571		0.2087413	[0.2-0.22] unit increase	Affymetrix [~ 2500000] (imputed)	N
1618	chr6	135431639	135431640	rs9494142	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	6q23.3	intergenic	rs9494142-C	0.2495	4E-22		0.04022061	[0.032-0.048] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1618	chr6	135431806	135431807	rs9389270	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	6q23.3	NR	rs9389270-T	0.231268	2E-717		0.122459	[0.12-0.13] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1618	chr6	135432551	135432552	rs9494145	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	6q23.3		rs9494145-C	0.238928	7E-15		0.020586947	[0.015-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1618	chr6	135432551	135432552	rs9494145	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Platelet count	8,850 African American individuals, 18,949 Hispanic/Latino individuals, 541 Asian ancestry individuals, 603 Native American ancestry individuals, 385 individuals	NA	6q23.3	NR	rs9494145-?	NR	8E-17		6.116249	[4.68-7.56] unit increase	Illumina [30743395] (imputed)	N
1618	chr6	135432551	135432552	rs9494145	26805783	Schick UM	2016-01-21	Am J Hum Genet	Genome-wide Association Study of Platelet Count Identifies Ancestry-Specific Loci in Hispanic/Latino Americans.	Platelet count	12,491 Hispanic/Latin American individuals	7,170 Hispanic/Latin American individuals	6q23.3	HBS1L, MYB	rs9494145-C	0.16	4E-8		5.88	[3.78-7.98] unit increase	Illumina [2232944] (imputed)	N
1618	chr6	135432551	135432552	rs9494145	25372704	Mtatiro SN	2014-11-05	PLoS One	Genome wide association study of fetal hemoglobin in sickle cell anemia in Tanzania.	Fetal hemoglobin levels in sickle cell anemia	1,213 Tanzanian ancestry cases	321 Afro-Caribbean and Sub-Saharan African cases	6q23.3	HBS1L, MYB, HMIP	rs9494145-?	0.05	2E-10		0.23	[NR] unit increase	Illumina [15153765] (imputed)	N
1618	chr6	135432551	135432552	rs9494145	22423221	Qayyum R	2012-03-08	PLoS Genet	A meta-analysis and genome-wide association study of platelet count and mean platelet volume in african americans.	Platelet count	16,388 African American individuals	NA	6q23.3	HBS1L, MYB	rs9494145-T	0.73	3E-9		8.19	[5.49-10.89] 10^9 L increase	Affymetrix, Illumina [~ 2200000] (imputed)	N
1618	chr6	135432551	135432552	rs9494145	20927387	Kullo IJ	2010-09-28	PLoS One	A genome-wide association study of red blood cell traits using the electronic medical record.	Red blood cell traits	3,012 European ancestry individuals	NA	6q23.3	HBS1L, MYB	rs9494145-C	0.24	3E-15	(MCV)	0.98	[0.74-1.22] unit increase	Illumina [489421]	N
1618	chr6	135435500	135435501	rs9483788	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	6q23.3	NR	rs9483788-C	0.257629	3E-538		0.103626	[0.1-0.108] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1618	chr6	135435500	135435501	rs9483788	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular hemoglobin	up to 21,020 European ancestry individuals, up to 3,621 African American individuals, up to 15,062 East Asian individuals.	16,389 individuals of European and African American ancestry.	6q23.3	HBS1L	rs9483788-?	NR	2E-69				NR [2500000] (imputed)	N
1618	chr6	135435500	135435501	rs9483788	19862010	Ganesh SK	2009-10-11	Nat Genet	Multiple loci influence erythrocyte phenotypes in the CHARGE Consortium.	Other erythrocyte phenotypes	24,167 European ancestry individuals	9,456 European ancestry individuals	6q23.3	HBS1L, MYB	rs9483788-G	NR	1E-47	(RBC)	0.0	[0.012-0.016] 1 M cells/mm^3 increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1618	chr6	135435500	135435501	rs9483788	19862010	Ganesh SK	2009-10-11	Nat Genet	Multiple loci influence erythrocyte phenotypes in the CHARGE Consortium.	Hematocrit	24,167 European ancestry individuals	9,456 European ancestry individuals	6q23.3	HBS1L, MYB	rs9483788-C	NR	3E-15		0.22	[0.16-0.28] % increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1618	chr6	135437385	135437386	rs1320959	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	6q23.3	NR	rs1320959-C	0.236453	1E-712		0.128359	[0.12-0.13] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
1618	chr6	135437385	135437386	rs1320959	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	6q23.3	intergenic	rs1320959-C	0.2364	2E-34		0.050859	[0.043-0.059] unit increase	Affymetrix [~ 2500000] (imputed)	N
1618	chr6	135439262	135439263	rs2026937	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	6q23.3		rs2026937-?	NR	3E-10				NR [~ 8900000] (imputed)	N
1618	chr6	135441747	135441748	rs72974176	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6q23.3		rs72974176-C	0.946	6E-31				Affymetrix [10369434] (imputed)	N
1618	chr6	135441747	135441748	rs72974176	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6q23.3		rs72974176-C	0.946	3E-32				Affymetrix [10369434] (imputed)	N
1618	chr6	135446825	135446826	rs12191243	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	6q23.3		rs12191243-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1618	chr6	135447772	135447773	rs9321485	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	6q23.3		rs9321485-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1618	chr6	135451196	135451197	rs1041478	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	6q23.3	NR	rs1041478-G	0.419077	1E-12		0.0221225	[0.016-0.028] unit decrease	NR [19129689] (imputed)	N
1618	chr6	135451579	135451580	rs1569534	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	6q23.3		rs1569534-T	0.224336	2E-28		0.036253016	[0.03-0.043] unit decrease	Affymetrix [93095623] (imputed)	N
1618	chr6	135452151	135452152	rs6569992	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	6q23.3	NR	rs6569992-A	NR	5E-24		0.0313	[0.025-0.037] unit decrease	Affymetrix [9000000] (imputed)	N
1618	chr6	135452151	135452152	rs6569992	20927387	Kullo IJ	2010-09-28	PLoS One	A genome-wide association study of red blood cell traits using the electronic medical record.	Red blood cell traits	3,012 European ancestry individuals	NA	6q23.3	HBS1L, MYB	rs6569992-A	0.20	6E-9	(RBC count)	0.07	[0.05-0.09] unit decrease	Illumina [489421]	N
1618	chr6	135452151	135452152	rs6569992	20927387	Kullo IJ	2010-09-28	PLoS One	A genome-wide association study of red blood cell traits using the electronic medical record.	Red blood cell traits	3,012 European ancestry individuals	NA	6q23.3	HBS1L, MYB	rs6569992-A	0.20	3E-8	(MCV)	0.75	[0.48-1.02] unit increase	Illumina [489421]	N
1618	chr6	135452151	135452152	rs6569992	20927387	Kullo IJ	2010-09-28	PLoS One	A genome-wide association study of red blood cell traits using the electronic medical record.	Red blood cell traits	3,012 European ancestry individuals	NA	6q23.3	HBS1L, MYB	rs6569992-A	0.19	1E-8	(MCH)	0.3	[0.19-0.40] unit increase	Illumina [489421]	N
1618	chr6	135452215	135452216	rs1570649	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	6q23.3		rs1570649-?	NR	1E-300				NR [~ 8900000] (imputed)	N
1618	chr6	135454492	135454493	rs6930287	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	6q23.3		rs6930287-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1618	chr6	135460117	135460119	rs564719379	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	349,856 European ancestry individuals, 91,908 East Asian ancestry individuals	NA	6q23.3		rs564719379-C	NR	7E-9		0.0129	[0.0086-0.0172] unit increase	Affymetrix, Illumina [20529536] (imputed)	N
1618	chr6	135476120	135476121	rs62429774	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	6q23.3	NR	rs62429774-C	0.186669	7E-668		0.131379	[0.13-0.14] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1618	chr6	135477267	135477268	rs36013298	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6q23.3		rs36013298-C	0.914	1E-14				Affymetrix [10369434] (imputed)	N
1618	chr6	135480598	135480599	rs529408809	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	6q23.3		rs529408809-C	0.313067	5E-26		0.026274262	[0.021-0.031] unit increase	Affymetrix [93095623] (imputed)	N
1618	chr6	135482565	135482566	rs6569999	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	6q23.3		rs6569999-?	NR	5E-10				NR [~ 8900000] (imputed)	N
1618	chr6	135486140	135486141	rs113617776	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	6q23.3		rs113617776-?	NR	4E-15				NR [~ 8900000] (imputed)	N
1618	chr6	135490897	135490898	rs9483798	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	6q23.3		rs9483798-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1618	chr6	135490897	135490898	rs9483798	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6q23.3		rs9483798-C	0.801	3E-43				Affymetrix [10369434] (imputed)	N
1618	chr6	135491871	135491872	rs10872428	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6q23.3		rs10872428-G	0.808	1E-61				Affymetrix [10369434] (imputed)	N
1618	chr6	135491871	135491872	rs10872428	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q23.3	NR	rs10872428-T	0.207019	5E-497				Affymetrix, Illumina [24246363] (imputed)	N
1618	chr6	135494874	135494875	rs9321490	21833088	Sawcer S	2011-08-11	Nature	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	6q23.3	MYB	rs9321490-G	NR	2E-6	(Conditioned on rs11154801)	1.1	[1.08-1.11]	Illumina [465434]	N
1618	chr6	135495225	135495226	rs2327586	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	6q23.3	HBS1L	rs2327586-T	NR	9E-20		1.1053	NR	Affymetrix, Illumina [8278136] (imputed)	N
1618	chr6	135495225	135495226	rs2327586	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	6q23.3		rs2327586-?	NR	3E-253				NR [~ 8900000] (imputed)	N
1618	chr6	135499459	135499460	rs9376098	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	6q23.3	MYB	rs9376098-A	0.349227	4E-43		0.032232836	[0.028-0.037] unit increase	Affymetrix [93095623] (imputed)	N
1618	chr6	135499459	135499460	rs9376098	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q23.3	NR	rs9376098-A	0.368215	7E-25				Affymetrix, Illumina [19905671] (imputed)	N
1618	chr6	135499459	135499460	rs9376098	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count (basophil)	171,846 European ancestry individuals	NA	6q23.3	MYB	rs9376098-A	0.3498	6E-9		0.021378	[0.014-0.029] unit increase	Affymetrix [~ 2500000] (imputed)	N
1618	chr6	135499459	135499460	rs9376098	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of white cells	171,996 European ancestry individuals	NA	6q23.3	MYB	rs9376098-A	0.3498	1E-12		0.02586259	[0.019-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
1618	chr6	135499459	135499460	rs9376098	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of granulocytes	170,223 European ancestry individuals	NA	6q23.3	MYB	rs9376098-A	0.3499	3E-12		0.0255682	[0.018-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
1618	chr6	135503784	135503785	rs210962	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Red blood cell count	up to 40,258 European ancestry individuals, up to 16,128 African American individuals, up to 15,252 East Asian individuals.	16,389 individuals of European and African American ancestry.	6q23.3	HBS1L	rs210962-?	NR	5E-16				NR [2500000] (imputed)	N
1618	chr6	135511258	135511259	rs187487616	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	6q23.3	MYB	rs187487616-T	0.00327200000000005	8E-13		0.14339459	[0.1-0.18] unit increase	Affymetrix [93095623] (imputed)	N
1618	chr6	135512778	135512779	rs79564755	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	6q23.3	MYB	rs79564755-G	0.00673500000000005	4E-12		0.09499479	[0.068-0.122] unit increase	Affymetrix [93095623] (imputed)	N
1618	chr6	135514829	135514830	rs34931156	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Diastolic blood pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	6q23.3	chr6mb135	rs34931156-?	0.20929338	9E-6		0.1575	[0.088-0.227] unit increase	Affymetrix [~ 9800000] (imputed)	N
1618	chr6	135517613	135517614	rs12663543	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	6q23.3	MYB	rs12663543-G	0.1184	2E-17		0.029562103	[0.023-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
1618	chr6	135523125	135523126	rs181880988	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	6q23.3		rs181880988-?	NR	1E-20				NR [~ 8900000] (imputed)	N
1619	chr6	135529115	135529116	rs145125135	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6q23.3		rs145125135-C	0.792	7E-17				Affymetrix [10369434] (imputed)	N
1619	chr6	135529115	135529116	rs145125135	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6q23.3		rs145125135-C	0.792	9E-17				Affymetrix [10369434] (imputed)	N
1619	chr6	135529115	135529116	rs145125135	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	6q23.3	MYB	rs145125135-T	0.207425	3E-9		0.016501062	[0.011-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1619	chr6	135529219	135529219	rs562573028	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	6q23.3	MYB	rs562573028-AT	0.37945	9E-16		0.01861983	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1619	chr6	135531450	135531451	rs210950	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	6q23.3	MYB	rs210950-G	0.39935	5E-9		0.013588123	[0.009-0.0181] unit decrease	Affymetrix [93095623] (imputed)	N
1619	chr6	135531450	135531451	rs210950	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q23.3	NR	rs210950-C	0.601525	1E-11				Affymetrix, Illumina [17210439] (imputed)	N
1619	chr6	135531450	135531451	rs210950	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	6q23.3	NR	rs210950-C	0.601055	4E-13		0.014416	[0.011-0.018] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1619	chr6	135533283	135533284	rs210946	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6q23.3	MYB	rs210946-G	0.493811	2E-12		0.01579449	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1619	chr6	135533283	135533284	rs210946	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	6q23.3	MYB	rs210946-G	0.493802	1E-15		0.018098637	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1619	chr6	135533283	135533284	rs210946	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	6q23.3		rs210946-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1619	chr6	135537896	135537897	rs210938	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	6q23.3	MYB	rs210938-G	0.381545	1E-26		0.025483586	[0.021-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
1619	chr6	135537896	135537897	rs210938	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	6q23.3	MYB	rs210938-G	0.38156	2E-14		0.01760013	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1619	chr6	135540379	135540380	rs210937	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6q23.3	MYB	rs210937-A	0.345	8E-6	(Ghrelin )	0.04	[NR] pg/100 uL increase	Illumina [899892]	N
1619	chr6	135551485	135551486	rs147551892	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	6q23.3		rs147551892-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1619	chr6	135585977	135585978	rs118038583	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	6q23.3		rs118038583-?	NR	9E-13				NR [~ 8900000] (imputed)	N
1619	chr6	135604154	135604154	rs139314969	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	6q23.3	AHI1	rs139314969-AAAG	0.033209	7E-9		0.036461443	[0.024-0.049] unit increase	Affymetrix [93095623] (imputed)	N
1619	chr6	135624810	135624811	rs6931735	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6q23.3		rs6931735-G	0.446	2E-9				Affymetrix [10369434] (imputed)	N
1619	chr6	135626347	135626348	rs6928977	29196614	Sud A	2017-12-01	Nat Commun	Genome-wide association study of classical Hodgkin lymphoma identifies key regulators of disease susceptibility.	Nodular sclerosis Hodgkin lymphoma	1,278 European ancestry cases, 14,325 European ancestry controls	1,586 cases, 3,069 controls	6q23.3	AHI1	rs6928977-G	0.43	5E-11		1.23	[1.16-1.31]	Illumina [> 10000000] (imputed)	N
1619	chr6	135626347	135626348	rs6928977	29196614	Sud A	2017-12-01	Nat Commun	Genome-wide association study of classical Hodgkin lymphoma identifies key regulators of disease susceptibility.	Hodgkin's lymphoma	3,077 European ancestry cases, 13,680 European ancestry controls	2,237 cases, 3,069 controls	6q23.3	AHI1	rs6928977-G	0.43	1E-10		1.17	[1.12-1.23]	Illumina [> 10000000] (imputed)	N
1619	chr6	135627533	135627534	rs6912933	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	6q23.3	RP3-388E23.2, AHI1	rs6912933-A	0.527973	6E-10		0.014047481	[0.0096-0.0185] unit decrease	Affymetrix [93095623] (imputed)	N
1619	chr6	135639643	135639644	rs6914831	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	6q23.3		rs6914831-?	NR	3E-15				NR [~ 8900000] (imputed)	N
1619	chr6	135639643	135639644	rs6914831	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	2,018 European ancestry cases, 6,925 European ancestry controls	6q23.3	AHI1	rs6914831-C		4E-7		1.11	[1.07-1.16]	Illumina [644674]	N
1619	chr6	135641416	135641417	rs9321501	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	6q23.3	AHI1	rs9321501-A	0.542588	1E-12		0.015930975	[0.012-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1619	chr6	135645202	135645203	rs2064431	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6q23.3	AHI1	rs2064431-A	0.542438	2E-23		0.022207702	[0.018-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1619	chr6	135645202	135645203	rs2064431	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	6q23.3	AHI1	rs2064431-A	0.542464	1E-28		0.024884881	[0.02-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1619	chr6	135649620	135649641	rs146318841	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	6q23.3	AHI1	rs146318841-G	0.5244	3E-14		0.02735721	[0.02-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
1619	chr6	135649620	135649641	rs146318841	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	6q23.3	AHI1	rs146318841-G	0.5243	1E-14		0.02783047	[0.021-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
1619	chr6	135649620	135649641	rs146318841	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	6q23.3	AHI1	rs146318841-G	0.5243	3E-15		0.02847828	[0.021-0.036] unit increase	Affymetrix [~ 2500000] (imputed)	N
1619	chr6	135649620	135649641	rs146318841	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	6q23.3	AHI1	rs146318841-G	0.5243	3E-14		0.02734774	[0.02-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
1619	chr6	135653854	135653855	rs2746419	31263063	Dufek S	2019-07-01	J Am Soc Nephrol	Genetic Identification of Two Novel Loci Associated with Steroid-Sensitive Nephrotic Syndrome.	Childhood steroid-sensitive nephrotic syndrome	422 European ancestry cases, 5,642 European ancestry controls	NA	6q23.3	NR	rs2746419-A	0.46	1E-6		1.42	[1.23-1.63]	Illumina [5216266] (imputed)	N
1620	chr6	135669030	135669031	rs17064440	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	6q23.3	NR	rs17064440-?	NR	6E-6	(AA)	5.78	[4.55-7.01]	Illumina [905956]	N
1620	chr6	135669096	135669097	rs2746427	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	6q23.3	AHI1	rs2746427-A	0.5543	2E-15		0.02871928	[0.022-0.036] unit increase	Affymetrix [~ 2500000] (imputed)	N
1620	chr6	135677201	135677202	rs2614258	33106285	Lopez-Isac E	2020-10-26	Ann Rheum Dis	Combined genetic analysis of juvenile idiopathic arthritis clinical subtypes identifies novel risk loci, target genes and key regulatory mechanisms.	Arthritis (juvenile idiopathic)	3,305 European ancestry cases, 9,196 European ancestry controls	2,751 European ancestry cases, 15,886 European ancestry controls	6q23.3	AHI1	rs2614258-A	NR	9E-12		1.17	[1.12-1.22]	Illumina [7461261] (imputed)	N
1620	chr6	135684622	135684623	rs7748148	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6q23.3		rs7748148-T	0.46	2E-11				Affymetrix [10369434] (imputed)	N
1620	chr6	135691515	135691516	rs2246943	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	6q23.3		rs2246943-?	NR	6E-24				NR [~ 8900000] (imputed)	N
1620	chr6	135692846	135692847	rs2614287	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6q23.3		rs2614287-G	0.443	4E-10				Affymetrix [10369434] (imputed)	N
1620	chr6	135696596	135696597	rs2746432	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	6q23.3		rs2746432-?	NR	2E-28				NR [~ 8900000] (imputed)	N
1620	chr6	135707485	135707486	rs7773987	27723758	Bronson PG	2016-10-10	Nat Genet	Common variants at PVT1, ATG13-AMBRA1, AHI1 and CLEC16A are associated with selective IgA deficiency.	Selective IgA deficiency	1,635 European ancestry cases, 4,852 European ancestry controls	NA	6q23.3	AHI1	rs7773987-T	0.513	8E-10		0.7	[NR]	Illumina [up to 9464381] (imputed)	N
1620	chr6	135709759	135709760	rs3827780	34103634	Valette K	2021-06-08	Commun Biol	Prioritization of candidate causal genes for asthma in susceptibility loci derived from UK Biobank.	Asthma	56,167 White-British ancestry cases, 352,255 White-British ancestry controls	NA	6q23.3	AHI1	rs3827780-A	0.555099041639075	2E-8		0.036847267	[0.024-0.05] unit decrease	Affymetrix [35186738] (imputed)	N
1620	chr6	135712437	135712438	rs12190426	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Respiratory diseases	approximately 459,000 European ancestry individuals	NA	6q23.3		rs12190426-?	NR	8E-9				NR [~ 8900000] (imputed)	N
1620	chr6	135715374	135715375	rs2614265	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	6q23.3	AHI1	rs2614265-C	0.458117	9E-22		0.021504367	[0.017-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1620	chr6	135716531	135716532	rs2614266	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	6q23.3	AHI1	rs2614266-A	0.43632	9E-12		1.0421101	[1.02983411256261-1.05453244981004]	NR [9572556] (imputed)	N
1620	chr6	135718067	135718068	rs2746438	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6q23.3	NR	rs2746438-T	0.4445	6E-11		1.04	[1.028-1.051]	Affymetrix [15688218] (imputed)	N
1620	chr6	135718067	135718068	rs2746438	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	6q23.3		rs2746438-?	NR	9E-16				NR [~ 8900000] (imputed)	N
1620	chr6	135718515	135718516	rs113473601	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	6q23.3	AHI1	rs113473601-C	0.00679600000000002	3E-9		0.08726996	[0.058-0.116] unit increase	Affymetrix [93095623] (imputed)	N
1620	chr6	135721284	135721285	rs13208164	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	6q23.3		rs13208164-?	NR	8E-31				NR [~ 8900000] (imputed)	N
1620	chr6	135739354	135739355	rs11154801	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	6q23.3	AHI1	rs11154801-?	NR	4E-7		1.11	[1.06-1.16]	Illumina [at least 5000000] (imputed)	N
1620	chr6	135739354	135739355	rs11154801	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	6q23.3	AHI1	rs11154801-A	0.37	2E-20		1.12		Illumina [161311]	N
1620	chr6	135739354	135739355	rs11154801	21833088	Sawcer S	2011-08-11	Nature	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	6q23.3	AHI1	rs11154801-A	NR	1E-13		1.13	[1.11-1.15]	Illumina [465434]	N
1620	chr6	135749201	135749202	rs1547079	31991592	Coltell O	2020-01-24	Nutrients	Genome-Wide Association Study for Serum Omega-3 and Omega-6 Polyunsaturated Fatty Acids: Exploratory Analysis of the Sex-Specific Effects and Dietary Modulation in Mediterranean Subjects with Metabolic Syndrome.	Serum omega-3 polyunsaturated fatty acid concentration in metabolic syndrome	426 Mediterranean individuals	NA	6q23.3	AHI1	rs1547079-C	0.177	6E-6		0.389	[0.22-0.56] unit increase	Illumina [621723]	N
1620	chr6	135752091	135752092	rs565208646	34620984	Skuladottir AT	2021-10-07	Commun Biol	A genome-wide meta-analysis uncovers six sequence variants conferring risk of vertigo.	Vertigo	48,072 European ancestry cases, 894,541 European ancestry controls	NA	6q23.3		rs565208646-T	NR	6E-6		2.13763		Affymetrix, Illumina [62056310] (imputed)	N
1621	chr6	135804630	135804631	rs4526212	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	6q23.3	AHI1	rs4526212-A	0.37	2E-13				NR [> 9500000] (imputed)	N
1621	chr6	135818896	135818897	rs13197384	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6q23.3	NR	rs13197384-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
1621	chr6	135833462	135833463	rs4896153	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	6q23.3	LINC00271	rs4896153-T	NR	3E-29		1.1152002	NR	Affymetrix, Illumina [8278136] (imputed)	N
1621	chr6	135859696	135859697	rs9402715	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	6q23.3	LINC00271	rs9402715-?	NR	5E-6	(Hispanic)	1.38	[1.20-1.58]	Illumina [at least 5000000] (imputed)	N
1621	chr6	135861040	135861041	rs144124553	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	6q23.3		rs144124553-?	NR	2E-34				NR [~ 8900000] (imputed)	N
1621	chr6	135889804	135889805	rs12663042	28360221	Boger CA	2017-03-30	J Am Soc Nephrol	NFAT5 and SLC4A10 Loci Associate with Plasma Osmolality.	Blood osmolality (transformed sodium)	45,889 European ancestry individuals, up to 8,765 Asian Indian ancestry individuals, up to 7,215 African ancestry individuals	17,637 European ancestry individuals	6q23.3	NR	rs12663042-A	0.02	7E-6	(Asian)	0.45	[0.25-0.65] unit decrease	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1621	chr6	135899343	135899344	rs2092556	31991592	Coltell O	2020-01-24	Nutrients	Genome-Wide Association Study for Serum Omega-3 and Omega-6 Polyunsaturated Fatty Acids: Exploratory Analysis of the Sex-Specific Effects and Dietary Modulation in Mediterranean Subjects with Metabolic Syndrome.	Serum omega-3 polyunsaturated fatty acid concentration in metabolic syndrome	426 Mediterranean individuals	NA	6q23.3	LINC00271	rs2092556-C	0.188	2E-6		0.409	[0.24-0.58] unit increase	Illumina [621723]	N
1621	chr6	135899343	135899344	rs2092556	31991592	Coltell O	2020-01-24	Nutrients	Genome-Wide Association Study for Serum Omega-3 and Omega-6 Polyunsaturated Fatty Acids: Exploratory Analysis of the Sex-Specific Effects and Dietary Modulation in Mediterranean Subjects with Metabolic Syndrome.	Serum docosahexaenoic fatty acid concentration in metabolic syndrome	426 Mediterranean individuals	NA	6q23.3	LINC00271	rs2092556-C	0.188	1E-6		0.154	[0.093-0.215] unit increase	Illumina [621723]	N
1621	chr6	135902598	135902599	rs761357	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	6q23.3		rs761357-?	NR	6E-10				NR [~ 8900000] (imputed)	N
1621	chr6	135902598	135902599	rs761357	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Autoimmune traits	approximately 459,000 European ancestry individuals	NA	6q23.3		rs761357-?	NR	8E-11				NR [~ 8900000] (imputed)	N
1621	chr6	135910910	135910911	rs116990752	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	6q23.3		rs116990752-?	NR	9E-26				NR [~ 8900000] (imputed)	N
1622	chr6	135951416	135951417	rs2327650	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	6q23.3		rs2327650-?	NR	5E-15				NR [~ 8900000] (imputed)	N
1622	chr6	136001002	136001003	rs9389316	22610502	Kennedy RB	2012-05-19	Hum Genet	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IL-2)	Up to 512 European ancestry individuals, up to 199 African American individuals	NA	6q23.3	GAPDHL19	rs9389316-A		7E-13	(EA)			Illumina [NR]	N
1622	chr6	136001033	136001034	rs9402743	27399966	Morris DL	2016-07-11	Nat Genet	Genome-wide association meta-analysis in Chinese and European individuals identifies ten new loci associated with systemic lupus erythematosus.	Systemic lupus erythematosus	1,659 Chinese ancestry cases, 3,398 Chinese ancestry controls, 4,036 European ancestry cases, 6,959 European ancestry controls	3,043 Chinese ancestry cases, 5,074 Chinese ancestry controls, 2,643 European ancestry cases, 9,032 European ancestry controls	6q23.3	AHI1	rs9402743-G	0.358	5E-6		1.08	[NR]	NR [6344733] (imputed)	N
1622	chr6	136001033	136001034	rs9402743	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	2,018 European ancestry cases, 6,925 European ancestry controls	6q23.3	LINC00271	rs9402743-G		5E-6		1.1	[1.06-1.15]	Illumina [644674]	N
1623	chr6	136065812	136065813	rs1119555	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	6q23.3		rs1119555-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1623	chr6	136068015	136068016	rs4895455	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	6q23.3		rs4895455-?	NR	3E-10				NR [~ 8900000] (imputed)	N
1623	chr6	136077928	136077929	rs79846291	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Hippocampal volume in Alzheimer's disease dementia	190 European ancestry Alzheimer's disease dementia cases	NA	6q23.3	LINC00271, PDE7B	rs79846291-T	0.02	2E-8		1.85	[1.24-2.46] unit increase	Illumina [8437147] (imputed)	N
1623	chr6	136115506	136115507	rs9494389	32581359	Saevarsdottir S	2020-06-24	Nature	FLT3 stop mutation increases FLT3 ligand level and risk of autoimmune thyroid disease.	Autoimmune thyroid disease	30,234 European ancestry cases, 724,172 European ancestry controls	NA	6q23.3	NR	rs9494389-C	0.308	1E-11		1.07	[NR]	Affymetrix, Illumina [42900000] (imputed)	N
1623	chr6	136132495	136132496	rs7742626	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hypothyroidism	30,155 European ancestry cases, 379,986 European ancestry controls, 1,114 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	6q23.3		rs7742626-C	NR	3E-9		0.0686	[0.046-0.091] unit increase	Affymetrix, Illumina [25801083] (imputed)	N
1623	chr6	136133658	136133659	rs947583	20558539	Kestenbaum B	2010-06-17	J Am Soc Nephrol	Common genetic variants associate with serum phosphorus concentration.	Phosphorus levels	16,264 European ancestry individuals	5,444 individuals	6q23.3	PDE7B	rs947583-C	0.29	3E-12		0.04	[NR] mg/dl increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1623	chr6	136140995	136140996	rs75593766	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	6q23.3	NR	rs75593766-T	NR	3E-9		0.0304	[0.02-0.04] unit increase	Affymetrix [9000000] (imputed)	N
1623	chr6	136145478	136145479	rs11154825	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	6q23.3		rs11154825-T	NR	5E-8		0.0566	[0.036-0.077] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1623	chr6	136162421	136162422	rs117976152	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	6q23.3		rs117976152-?	NR	2E-26				NR [~ 8900000] (imputed)	N
1624	chr6	136198593	136198594	rs6570048	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q23.3	NR	rs6570048-T	0.507811	5E-10				Affymetrix, Illumina [24653286] (imputed)	N
1624	chr6	136198593	136198594	rs6570048	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6q23.3	PDE7B	rs6570048-C		1E-11		0.015	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
1624	chr6	136204504	136204505	rs10872447	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	6q23.3		rs10872447-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1624	chr6	136214154	136214155	rs2027518	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	6q23.3		rs2027518-?	NR	1E-38				NR [~ 8900000] (imputed)	N
1624	chr6	136217298	136217299	rs6570053	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	6q23.3	NR	rs6570053-A	0.615615	9E-12		0.012951	[0.0092-0.0167] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
1624	chr6	136227253	136227254	rs9376164	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	6q23.3		rs9376164-A	NR	2E-13		0.0117	[0.0086-0.0148] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1624	chr6	136227253	136227254	rs9376164	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	6q23.3	PDE7B	rs9376164-G	0.867011	1E-16		0.0233602	[0.018-0.029] unit increase	NR [13737936] (imputed)	N
1624	chr6	136227253	136227254	rs9376164	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	6q23.3		rs9376164-?	NR	1E-26				NR [~ 8900000] (imputed)	N
1624	chr6	136227253	136227254	rs9376164	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6q23.3		rs9376164-?	NR	2E-30		0.0328638	[0.027-0.039] unit increase	Affymetrix [20259828] (imputed)	N
1624	chr6	136228218	136228219	rs2327672	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	6q23.3	NR	rs2327672-A	NR	4E-9		0.0206	[0.014-0.027] unit increase	Affymetrix [9000000] (imputed)	N
1624	chr6	136228616	136228617	rs78928932	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	6q23.3		rs78928932-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1624	chr6	136228674	136228675	rs12209685	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6q23.3		rs12209685-?	NR	7E-12				NR [~ 8900000] (imputed)	N
1624	chr6	136228674	136228675	rs12209685	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6q23.3		rs12209685-?	NR	8E-27		0.0215522	[0.017-0.026] unit decrease	Affymetrix [20259828] (imputed)	N
1624	chr6	136231010	136231011	rs12529766	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6q23.3		rs12529766-?	NR	3E-30		0.032573	[0.027-0.039] unit increase	Affymetrix [20259828] (imputed)	N
1624	chr6	136231010	136231011	rs12529766	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	6q23.3	PDE7B	rs12529766-C	0.866583	5E-6	(women)	0.0304893	[0.017-0.044] unit increase	NR [17166351] (imputed)	N
1624	chr6	136231010	136231011	rs12529766	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	6q23.3	PDE7B	rs12529766-C	0.86632	3E-11		0.0321292	[0.022-0.042] unit increase	NR [17166351] (imputed)	N
1624	chr6	136235567	136235568	rs12208105	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	6q23.3	NR	rs12208105-G	NR	2E-11		0.0174	[0.012-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
1624	chr6	136235567	136235568	rs12208105	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	6q23.3	PDE7B	rs12208105-A	0.62032	2E-11		0.0133146	[0.0094-0.0172] unit decrease	NR [13737936] (imputed)	N
1624	chr6	136244662	136244663	rs9494417	32853455	Schwantes-An TH	2020-08-27	Hepatology	Genome-wide association study and meta-analysis on alcohol-related liver cirrhosis identifies novel genetic risk factors.	Cirrhosis (alcohol related)	1,128 European ancestry cases, 849 European ancestry heavy-drinking controls	up to 2,369 European ancestry cases, up to 10,434 European ancestry heavy-drinking controls	6q23.3	PDE7B	rs9494417-A	NR	1E-6		0.3374	[0.2-0.47] unit increase	Illumina [9377111] (imputed)	N
1624	chr6	136246148	136246149	rs397687711	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	6q23.3		rs397687711-G	NR	5E-9		0.0172	[0.011-0.023] unit increase	Affymetrix, Illumina [20528270] (imputed)	N
1624	chr6	136274369	136274371	rs34729823	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 59)	4,680 European ancestry individuals	3,566 European ancestry individuals	6q23.3		rs34729823-G	0.36215105	9E-21				Illumina [7417619] (imputed)	N
1624	chr6	136290941	136290942	rs11154838	30323354	Lee JY	2018-10-15	Sci Rep	BRCA1/2-negative, high-risk breast cancers (BRCAX) for Asian women: genetic susceptibility loci and their potential impacts.	BRCA1/2-negative high-risk breast cancer	1,469 Korean ancestry cases, 5,979 Korean ancestry controls	NA	6q23.3	PDE7B	rs11154838-C	0.75	1E-6		1.27	[1.15-1.40]	Affymetrix, Illumina [3378933] (imputed)	N
1624	chr6	136294982	136294983	rs4072488	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6q23.3	FAM54A	rs4072488-?	NR	2E-6	(SM 22:0)	0.16724785	[0.098-0.236] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1624	chr6	136297336	136297337	rs4896190	33547071	Bonfante B	2021-02-05	Sci Adv	A GWAS in Latin Americans identifies novel face shape loci, implicating VPS13B and a Denisovan introgressed region in facial variation.	Facial morphology (brow ridge protrusion 2)	6,169 Latin American individuals	NA	6q23.3		rs4896190-?	NR	7E-10				Illumina [8703729] (imputed)	N
1624	chr6	136297336	136297337	rs4896190	33547071	Bonfante B	2021-02-05	Sci Adv	A GWAS in Latin Americans identifies novel face shape loci, implicating VPS13B and a Denisovan introgressed region in facial variation.	Facial morphology (brow ridge protrusion 1)	6,169 Latin American individuals	NA	6q23.3		rs4896190-?	NR	7E-6				Illumina [8703729] (imputed)	N
1625	chr6	136328069	136328070	rs149647891	29551627	Hawcutt DB	2018-03-15	Lancet Respir Med	Susceptibility to corticosteroid-induced adrenal suppression: a genome-wide association study.	Peak cortisol response to low dose short synacthen test in corticosteroid treated asthma	407 European ancestry child cases	NA	6q23.3	PDE7B	rs149647891-?	NR	6E-7				Illumina [430492]	N
1625	chr6	136346129	136346130	rs17835714	31219225	Young KA	2019-06-20	Obesity (Silver Spring)	Genome-Wide Association Study Identifies Loci for Liver Enzyme Concentrations in Mexican Americans: The GUARDIAN Consortium.	Aspartate aminotransferase levels	3,644 Mexican American ancestry individuals	NA	6q23.3	PDE7B	rs17835714-?	NR	3E-8				Illumina [659222]	N
1625	chr6	136350206	136350207	rs9402784	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	6q23.3		rs9402784-T	0.38	1E-11		6.79	z score increase	Affymetrix [9061022] (imputed)	N
1625	chr6	136368004	136368005	rs11154851	23535033	Sherva R	2013-03-24	Alzheimers Dement	Genome-wide association study of the rate of cognitive decline in Alzheimer's disease.	Alzheimer's disease (cognitive decline)	303 European ancestry cases		6q23.3	PDE7B	rs11154851-?	0.04	1E-8		0.25	unit decrease	Illumina [NR] (imputed)	N
1625	chr6	136445320	136445321	rs3799385	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	6q23.3	NR	rs3799385-?	NR	7E-8				Affymetrix [NR]	N
1626	chr6	136458592	136458593	rs3757155	29891935	Choquet H	2018-06-11	Nat Commun	A multiethnic genome-wide association study of primary open-angle glaucoma identifies novel risk loci.	Glaucoma (primary open-angle)	10,523 European ancestry cases, 203,579 European ancestry controls, 411 Hispanic cases, 4,778 Hispanic controls, 463 East Asian ancestry cases, 4,907 East Asian ancestry controls, 298 African American cases, 1,549 African American controls, 204 South Asian ancestry cases, 4,916 South Asian ancestry controls, 272 African British cases, 4,831 African British controls, 144 mixed ancestry cases, 3,427 mixed ancestry controls	NA	6q23.3	PDE7B	rs3757155-C	NR	1E-14		1.12	1.09-1.15	Affymetrix [at least 665500] (imputed)	N
1626	chr6	136462743	136462744	rs4612174	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	9,179 European ancestry cases, 134,471 European ancestry controls, 1,983 East Asian ancestry cases, 13,719 East Asian ancestry controls, 127 Sub-Saharan African ancestry cases, 100 Sub-Saharan African ancestry controls	NA	6q23.3	PDE7B	rs4612174-T	NR	4E-9		1.10087	[1.07-1.13]	Illumina [NR] (imputed)	N
1626	chr6	136462743	136462744	rs4612174	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	23,963 European ancestry cases, 306,942 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	43,254 European ancestry cases, 1,471,118 European ancestry controls	6q23.3	PDE7B	rs4612174-T	NR	2E-29		0.0835	unit increase	Illumina [15409056] (imputed)	N
1626	chr6	136464534	136464535	rs7748159	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	8,758 European ancestry cases, 108,815 European ancestry controls, 1,996 East Asian ancestry cases, 16,559  East Asian ancestry controls, 171 Sub-Saharan African ancestry cases, 94 Sub-Saharan African ancestry controls	NA	6q23.3	PDE7B	rs7748159-T	NR	4E-8		1.09122	[1.06-1.12]	Illumina [NR] (imputed)	N
1626	chr6	136465571	136465572	rs4896199	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	6q23.3	PDE7B	rs4896199-A	0.622	6E-13		0.1031	[0.075-0.132] unit increase	Affymetrix [~ 11900000] (imputed)	N
1626	chr6	136474793	136474794	rs9494457	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Intraocular pressure	101,939 European ancestry cases	NA	6q23.3	NR	rs9494457-T		7E-14		0.11	[0.09-0.13] unit increase	NR [NR]	N
1626	chr6	136474793	136474794	rs9494457	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Intraocular pressure	133,492 European ancestry individuals	NA	6q23.3	PDE7B	rs9494457-T	0.62	2E-16				Affymetrix, Illumina [8002429] (imputed)	N
1626	chr6	136474793	136474794	rs9494457	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Glaucoma (multi-trait analysis)	133,492 European ancestry individuals with intraocular pressure measurements, 90,939 European ancestry individuals with vertical cup-disc ratio measurements, 7,947 British ancestry glaucoma cases, 119,318 British ancestry controls	6,924 European ancestry glaucoma cases, 40,230 European ancestry controls	6q23.3	PDE7B	rs9494457-T	0.62	7E-17		1.1	NR	Affymetrix, Illumina [8002429] (imputed)	N
1626	chr6	136474793	136474794	rs9494457	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Intraocular pressure	133,492 European ancestry individuals	NA	6q23.3	PDE7B	rs9494457-?	NR	4E-16		0.1078	[0.082-0.134] unit decrease	Affymetrix, Illumina [up to 40000000] (imputed)	N
1626	chr6	136474793	136474794	rs9494457	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Glaucoma	11,018 European ancestry cases, 126,068 European ancestry controls	NA	6q23.3	PDE7B	rs9494457-?	NR	8E-8		1.0905695	[1.06-1.13]	Affymetrix [up to 40000000] (imputed)	N
1626	chr6	136474793	136474794	rs9494457	29891935	Choquet H	2018-06-11	Nat Commun	A multiethnic genome-wide association study of primary open-angle glaucoma identifies novel risk loci.	Glaucoma (primary open-angle)	3,836 European ancestry cases, 48,065 European ancestry controls, 411 Hispanic cases, 4,778 Hispanic controls, 441 East Asian ancestry cases, 4,034 East Asian ancestry controls, 298 African American cases, 1,549 African American controls	6,687 European ancestry cases, 155,514 European ancestry controls, 204 South Asian ancestry cases, 4,916 South Asian ancestry controls, 272 African British cases, 4,831 African British controls, 22 East Asian ancestry cases, 873 East Asian ancestry controls, 144 mixed ancestry cases, 3,427 mixed ancestry controls	6q23.3	PDE7B	rs9494457-T		7E-6		1.08	[1.05-1.12]	Affymetrix [at least 665500] (imputed)	N
1626	chr6	136474793	136474794	rs9494457	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	6q23.3	PDE7B	rs9494457-T	0.619	4E-19		0.118	[0.093-0.143] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1626	chr6	136474793	136474794	rs9494457	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	6q23.3	PDE7B	rs9494457-T	0.6197	2E-14		0.1108	[0.082-0.139] unit increase	Affymetrix [~ 11900000] (imputed)	N
1626	chr6	136481390	136481391	rs509342	31311600	Namjou B	2019-07-17	BMC Med	GWAS and enrichment analyses of non-alcoholic fatty liver disease identify new trait-associated genes and pathways across eMERGE Network.	Aspartate aminotransferase levels in non-alcoholic fatty liver disease	1,075 European ancestry individuals	NA	6q23.3	PDE7B	rs509342-A	0.363128	9E-6		0.184519	[0.1-0.27] unit increase	NR [7263501] (imputed)	N
1626	chr6	136505035	136505036	rs560713	24002674	Ozel AB	2013-09-04	Hum Genet	Genome-wide association study and meta-analysis of intraocular pressure.	Intraocular pressure	2,847 European ancestry primary open angle glaucoma cases, 3,389 European ancestry controls	NA	6q23.3	PDE7B	rs560713-A	0.32	2E-6		0.53	[0.24-0.82] mmHg decrease	Illumina [466573]	N
1626	chr6	136515660	136515663	rs761545809	28585551	Sigurdsson S	2017-06-06	Nat Commun	Sequence variants in ARHGAP15, COLQ and FAM155A associate with diverticular disease and diverticulitis.	Diverticulitis	2,764 Icelandic ancestry cases, 245,951 Icelandic ancestry controls (includes non-array genotyped, whole-genome imputed individuals)	NA	6q23.3	PDE7B	rs761545809-A	0.0022	1E-6		3.06	[1.94-4.81]	Illumina [32463443] (imputed)	N
1626	chr6	136545272	136545273	rs113508841	24322204	Winham SJ	2013-12-10	Mol Psychiatry	Genome-wide association study of bipolar disorder accounting for effect of body mass index identifies a new risk allele in TCF7L2.	Bipolar disorder (body mass index interaction)	388 European ancestry cases, 1,020 European ancestry controls	NA	6q23.3	NR	rs113508841-?	NR	6E-6				NR [up to 8466825] (imputed)	N
1627	chr6	136582536	136582537	rs34541670	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Prostate cancer	7,438 White British ancestry cases, 118,206 White British ancestry controls	NA	6q23.3		rs34541670-?	NR	6E-6		1.4268	[1.27-1.58]	NR [680312]	N
1628	chr6	136829931	136829932	rs3799451	34062886	Nazarian A	2021-05-01	Genes (Basel)	Genome-Wide Analysis of Sex Disparities in the Genetic Architecture of Lung and Colorectal Cancers.	Lung cancer	237 European ancestry female cases, 220 European ancestry male cases, 8,354 European ancestry female controls, 6,278 European ancestry male controls	NA	6q23.3	MAP7	rs3799451-A	0.852	2E-6	(Male)	0.565	[0.45-0.68]	NR [up to 1668434] (imputed)	N
1629	chr6	136861398	136861399	rs3799468	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	6q23.3	MAP7	rs3799468-?	NR	4E-12		15750.792	NR unit decrease	Illumina [2379855]	N
1629	chr6	136868577	136868578	rs9399186	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Pursuit maintenance gain	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	6q23.3	MAP7	rs9399186-T	0.01383	8E-6	(EA)			Illumina [4404269] (imputed)	N
1629	chr6	136944778	136944779	rs78994374	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder in trauma exposed individuals	13,393 European ancestry cases, 10,701 European ancestry controls		6q23.3	NR	rs78994374-A	0.0200533	9E-6		1.118	[1.07-1.17]	Affymetrix [7791636] (imputed)	N
1630	chr6	136984370	136984371	rs147411255	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	6q23.3	NR	rs147411255-T	NR	2E-6	(male)	0.4905	[0.29-0.69] unit increase	Illumina [11133794] (imputed)	N
1630	chr6	137076009	137076010	rs6925103	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	6q23.3	MAP3K5	rs6925103-T	0.5094	4E-10		0.0121	[0.0084-0.0158] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1630	chr6	137082947	137082948	rs6924387	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	6q23.3		rs6924387-G	NR	6E-27		0.0228	[0.019-0.027] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
1630	chr6	137082947	137082948	rs6924387	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	6q23.3		rs6924387-G	NR	2E-8		0.0108	[0.0071-0.0145] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1630	chr6	137082947	137082948	rs6924387	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	6q23.3		rs6924387-G	NR	6E-11		0.0137	[0.0096-0.0178] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
1630	chr6	137082947	137082948	rs6924387	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6q23.3	MAP3K5	rs6924387-G	0.409847	2E-13		0.01653488	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1630	chr6	137082947	137082948	rs6924387	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	6q23.3	MAP3K5	rs6924387-G	0.409866	7E-14		0.016932225	[0.013-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1630	chr6	137082947	137082948	rs6924387	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6q23.3	MAP3K5	rs6924387-G	0.409878	1E-13		0.01678105	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1630	chr6	137082947	137082948	rs6924387	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	6q23.3	NR	rs6924387-G	0.412477	1E-18		0.016547	[0.013-0.02] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
1630	chr6	137082947	137082948	rs6924387	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	6q23.3	NR	rs6924387-G	0.412169	2E-18		0.017269	[0.013-0.021] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
1630	chr6	137082947	137082948	rs6924387	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q23.3	NR	rs6924387-G	0.424686	3E-16				Affymetrix, Illumina [19872809] (imputed)	N
1630	chr6	137082947	137082948	rs6924387	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	6q23.3	NR	rs6924387-G	0.410173	2E-16		0.016659	[0.013-0.021] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
1630	chr6	137082947	137082948	rs6924387	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	6q23.3	MAP3K5	rs6924387-A	0.589714	2E-12		0.013725	[0.0099-0.0175] unit increase	Affymetrix [NR] (imputed)	N
1630	chr6	137082947	137082948	rs6924387	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	6q23.3		rs6924387-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1630	chr6	137083137	137083138	rs932589	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q23.3	NR	rs932589-T	0.425862	2E-19				Affymetrix, Illumina [24649327] (imputed)	N
1630	chr6	137083137	137083138	rs932589	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q23.3	NR	rs932589-T	0.421117	8E-17				Affymetrix, Illumina [23114412] (imputed)	N
1630	chr6	137093376	137093377	rs9402846	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	6q23.3		rs9402846-?	NR	3E-13				NR [~ 8900000] (imputed)	N
1630	chr6	137098952	137098952	rs11406245	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	6q23.3		rs11406245-CA	NR	1E-9		0.0102	[0.0069-0.0135] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
1630	chr6	137099008	137099008	rs35387800	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	6q23.3	MAP3K5	rs35387800-C	0.379075	3E-13		0.016741456	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1631	chr6	137103193	137103194	rs6570101	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	6q23.3	MAP3K5	rs6570101-G	0.520122	2E-9		0.014534133	[0.0098-0.0193] unit increase	Affymetrix [93095623] (imputed)	N
1631	chr6	137104471	137104476	rs150432339	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	6q23.3		rs150432339-T	NR	5E-9		0.0116	[0.0077-0.0155] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1631	chr6	137111120	137111121	rs9494571	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q23.3	NR	rs9494571-T	0.582258	2E-18				Affymetrix, Illumina [23467995] (imputed)	N
1631	chr6	137113136	137113137	rs55666429	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	6q23.3		rs55666429-A	NR	7E-10		0.0128	[0.0087-0.0169] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
1631	chr6	137113136	137113137	rs55666429	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	6q23.3	NR	rs55666429-A	0.588432	2E-16		0.015704	[0.012-0.019] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1631	chr6	137144919	137144920	rs9385775	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6q23.3	PEX7	rs9385775-T	0.592498	3E-11		0.014850103	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
1631	chr6	137144919	137144920	rs9385775	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	6q23.3	PEX7	rs9385775-T	0.592451	5E-11		0.014789392	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
1631	chr6	137179386	137179387	rs2012700	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	6q23.3	NR	rs2012700-A	NR	2E-17		0.0219	[0.017-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
1631	chr6	137179386	137179387	rs2012700	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	6q23.3	NR	rs2012700-A	NR	1E-17		0.0221	[0.017-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
1631	chr6	137211651	137211652	rs9389448	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	6q23.3		rs9389448-T	NR	2E-9		0.0126	[0.0085-0.0167] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
1631	chr6	137214205	137214206	rs6570109	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	6q23.3	PEX7	rs6570109-T	0.526912	7E-12		0.0151731055	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1631	chr6	137216846	137216847	rs1012515	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	6q23.3	PEX7	rs1012515-T	0.493986	5E-9		0.012942494	[0.0086-0.0173] unit decrease	Affymetrix [93095623] (imputed)	N
1632	chr6	137242531	137242532	rs7765685	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Tea consumption	336,898 European ancestry individuals	39,924 European ancestry individuals	6q23.3	SLC35D3	rs7765685-C	0.4641	2E-6		0.0073	[0.0044-0.0102] unit increase	Affymetrix [~ 7740000] (imputed)	N
1632	chr6	137244956	137244957	rs139797380	33287642	Said MA	2020-12-08	J Am Heart Assoc	Associations of Observational and Genetically Determined Caffeine Intake With Coronary Artery Disease and Diabetes Mellitus.	Caffeine consumption from tea	395,866 European ancestry individuals	NA	6q23.3	PEX7, SLC35D3	rs139797380-C	0.991607	9E-9		0.075145	[0.05-0.101] unit increase	Affymetrix [19400838] (imputed)	N
1632	chr6	137244956	137244957	rs139797380	33287642	Said MA	2020-12-08	J Am Heart Assoc	Associations of Observational and Genetically Determined Caffeine Intake With Coronary Artery Disease and Diabetes Mellitus.	Caffeine consumption from coffee or tea	362,316 European ancestry individuals	NA	6q23.3	PEX7, SLC35D3	rs139797380-C	0.991601	4E-15		0.106741	[0.08-0.133] unit increase	Affymetrix [19400838] (imputed)	N
1632	chr6	137262329	137262330	rs6901068	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	6q23.3		rs6901068-G	NR	2E-8		0.014	[0.0091-0.0189] unit decrease	Affymetrix, Illumina [20535873] (imputed)	N
1632	chr6	137264747	137264748	rs2327773	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	6q23.3	SLC35D3	rs2327773-C	0.561255204375531	2E-6	(C_Actinobacteria_RNT)	0.102371	[0.06-0.145] unit increase	Illumina [7711310] (imputed)	N
1632	chr6	137275838	137275839	rs2327774	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	6q23.3		rs2327774-C	NR	1E-17		0.0199	[0.015-0.024] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
1632	chr6	137275838	137275839	rs2327774	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	6q23.3	NR	rs2327774-C	0.3792	2E-14		0.001815	[0.0013-0.0023] unit decrease	Affymetrix [NR] (imputed)	N
1632	chr6	137275883	137275884	rs12201974	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Coffee consumption	335,909 European ancestry individuals	39,924 European ancestry individuals	6q23.3	NHEG1	rs12201974-T	0.2039	4E-6		0.0086	[0.0049-0.0123] unit increase	Affymetrix [~ 7740000] (imputed)	N
1632	chr6	137287701	137287702	rs6918311	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	6q23.3		rs6918311-G	0.602751858	8E-16		0.07606594	[0.058-0.095] unit decrease	Illumina [13429769] (imputed)	N
1632	chr6	137287701	137287702	rs6918311	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	6q23.3		rs6918311-G	0.6033391	5E-17		0.930273	[0.914676828-0.946135144]	Illumina [8919992] (imputed)	N
1632	chr6	137287701	137287702	rs6918311	28566273	Scott RA	2017-05-31	Diabetes	An Expanded Genome-Wide Association Study of Type 2 Diabetes in Europeans.	Type 2 diabetes	up to 26,676 European ancestry cases, up to 132,532 European ancestry controls	14,545 European ancestry cases, 38,994 European ancestry controls	6q23.3	SLC35D3	rs6918311-A	0.53	7E-9		1.06	[1.04-1.08]	Affymetrix, Illumina [at least 11579618] (imputed)	N
1632	chr6	137288759	137288760	rs12662968	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	6q23.3		rs12662968-T	NR	6E-18		0.0548	[0.042-0.067] unit decrease	Affymetrix, Illumina [25845091] (imputed)	N
1632	chr6	137289964	137289965	rs145147495	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 6, height of vermillion lower lip)	2,187 European ancestry individuals	NA	6q23.3	NR	rs145147495-A	0.01192	2E-7		0.7289	[0.45-1] unit increase	Illumina [10677593] (imputed)	N
1632	chr6	137291280	137291281	rs6937795	24509480	Mahajan A	2014-02-09	Nat Genet	Genome-wide trans-ancestry meta-analysis provides insight into the genetic architecture of type 2 diabetes susceptibility.	Type 2 diabetes	12,171 European ancestry cases, 56,862 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls	21,491 European ancestry cases, 55,647 European ancestry controls	6q23.3	IL20RA	rs6937795-A		7E-6		1.04	[1.02-1.06]	Affymetrix, Illumina [2500000] (imputed)	N
1632	chr6	137293226	137293227	rs2327777	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	46,511 Asian ancestry cases, 169,776 Asian ancestry controls	NA	6q23.3	NR	rs2327777-C	0.6036	7E-14		0.0654	[0.048-0.082] unit decrease	Affymetrix, Illumina [1077427] (imputed)	N
1632	chr6	137293226	137293227	rs2327777	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	6q23.3	SLC35D3	rs2327777-T	0.39	5E-14		1.07	1.05-1.09	Illumina [12557761] (imputed)	N
1632	chr6	137294771	137294771	rs35389258	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	6q23.3	SLC35D3	rs35389258-T	0.45	9E-14		1.05	[1.04-1.07]	Affymetrix, Illumina [11800000] (imputed)	N
1632	chr6	137295351	137295352	rs2876354	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	6q23.3	NR	rs2876354-C	0.5168	1E-34		0.0465	[0.039-0.054] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1632	chr6	137298242	137298243	rs10872467	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	6q23.3		rs10872467-A	NR	9E-12		0.07	[0.05-0.09] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1632	chr6	137300959	137300960	rs9494624	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	6q23.3	SLC35D3	rs9494624-A	0.2899	6E-9		1.04	[1.03-1.06]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1632	chr6	137301297	137301298	rs11154902	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	6q23.3		rs11154902-T	NR	1E-9		0.0124	[0.0085-0.0163] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
1632	chr6	137302158	137302159	rs1573090	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	6q23.3	NR	rs1573090-G	0.4648	4E-22		0.0446	[0.036-0.054] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
1632	chr6	137302879	137302880	rs1539409	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	6q23.3		rs1539409-T	0.605234993	8E-12		0.070445314	[0.05-0.091] unit decrease	Illumina [13134967] (imputed)	N
1633	chr6	137385026	137385027	rs150604736	29563342	Li XS	2018-03-22	JCI Insight	Untargeted metabolomics identifies trimethyllysine, a TMAO-producing nutrient precursor, as a predictor of incident cardiovascular disease risk.	Plasma trimethyllysine levels	1,297 European ancestry individuals	NA	6q23.3	NR	rs150604736-A	0.01	3E-7		0.287	[0.18-0.4] unit increase	Affymetrix [9012028] (imputed)	N
1633	chr6	137433289	137433290	rs9376256	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip	15 Asian ancestry cases, 13 European ancestry cases, 15 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	6q23.3	NR	rs9376256-?	NR	9E-7		3.56	[2.78-4.55]	Illumina [539000] (imputed)	N
1633	chr6	137438056	137438057	rs62420820	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	6q23.3	IL20RA	rs62420820-A	NR	9E-36		1.1444	NR	Affymetrix, Illumina [8278136] (imputed)	N
1633	chr6	137438765	137438765	rs59947391	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	8,021 European ancestry cases, 16,489 European ancestry controls, 2,495 East Asian ancestry cases, 4,283 East Asian ancestry controls	NA	6q23.3		rs59947391-CTT	NR	3E-6		0.112505	[0.065-0.16] unit increase	NR [2787054] (imputed)	N
1633	chr6	137452907	137452908	rs17066096	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	6q23.3	IL22RA2	rs17066096-G	0.25	2E-23		1.14		Illumina [161311]	N
1633	chr6	137452907	137452908	rs17066096	21833088	Sawcer S	2011-08-11	Nature	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	6q23.3	IL22RA2	rs17066096-G	NR	6E-13		1.14	[1.12-1.15]	Illumina [465434]	N
1634	chr6	137514789	137514790	rs4896243	33393726	Ortiz Fernandez L	2021-01-04	Arthritis Rheumatol	Genetic association of a gain of function interferon gamma receptor 1 (IFNGR1) polymorphism and the intergenic region LNCAROD/DKK1 with Behcet's disease.	Behcet's disease	2,344 Turkish ancestry cases, 1,920 Turkish ancestry controls, 437 European ancestry cases, 3,325 European ancestry controls, 312 East Asian ancestry cases, 398 East Asian ancestry controls, 104 Tunisian ancestry cases, 142 Tunisian ancestry controls	NA	6q23.3	IFNGR1	rs4896243-C	NR	2E-9		1.2459		Illumina [up to 1244428] (imputed)	N
1634	chr6	137540369	137540370	rs7749390	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6q23.3		rs7749390-G	0.615947	2E-62		1.075533	[1.07-1.08]	Affymetrix, Illumina [9851866] (imputed)	N
1635	chr6	137636515	137636516	rs144970379	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Systolic blood pressure change trajectory	13,137 European ancestry individuals	2,451 European ancestry individuals	6q23.3	NR	rs144970379-A	0.9831	6E-7		0.2978	[0.18-0.41] mmHg decrease	Affymetrix, Illumina [NR] (imputed)	N
1635	chr6	137654308	137654309	rs117328143	31598132	Donati G	2019-06-30	Mind Brain Educ	Genome-Wide Association Study of Latent Cognitive Measures in Adolescence: Genetic Overlap With Intelligence and Education.	Cognitive performance (processing speed)	4,611 European ancestry adolescents	NA	6q23.3	IFNGR1	rs117328143-?	NR	1E-6		0.321	[0.18-0.46] unit decrease	Illumina [6319684] (imputed)	N
1635	chr6	137658555	137658556	rs9385792	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	6q23.3		rs9385792-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1635	chr6	137673301	137673302	rs6928289	23400010	Del-Aguila JL	2013-02-12	Pharmacogenomics J	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NA	6q23.3	OLIG3	rs6928289-G	0.45	9E-6	(AA-triglyceride response)	15.56	[8.68-22.44] mg/dL decrease	Affymetrix, Illumina [> 2000000] (imputed)	N
1635	chr6	137675540	137675541	rs13201877	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	6q23.3	NR	rs13201877-A	NR	2E-6		0.018	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
1635	chr6	137675540	137675541	rs13201877	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	6q23.3	IFNGR1	rs13201877-A	0.8661	5E-6				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1635	chr6	137675540	137675541	rs13201877	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	6q23.3	IFNGR1	rs13201877-A	0.8661	5E-6		0.0221	[0.013-0.032] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1635	chr6	137675540	137675541	rs13201877	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	6q23.3	NR	rs13201877-A	0.857176031701931	1E-7		0.020795291	unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1635	chr6	137675540	137675541	rs13201877	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	6q23.3	IFNGR1	rs13201877-G	0.143	2E-6	(EA, men)	0.028	[0.017-0.04] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1635	chr6	137675540	137675541	rs13201877	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	6q23.3	IFNGR1	rs13201877-G	0.142	2E-7	(EA)	0.023	[0.014-0.032] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1635	chr6	137675540	137675541	rs13201877	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	6q23.3	IFNGR1	rs13201877-G	0.14	4E-8		0.024	[0.015-0.032] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1635	chr6	137693166	137693167	rs9376273	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	6q23.3		rs9376273-?	NR	8E-11				NR [~ 8900000] (imputed)	N
1636	chr6	137811646	137811647	rs117070989	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	6q23.3	IFNGR1, OLIG3	rs117070989-C	0.01	2E-10	(EA)	0.934	[0.65-1.21] unit increase	Illumina [~ 9000000] (imputed)	N
1636	chr6	137811646	137811647	rs117070989	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	6q23.3	IFNGR1, OLIG3	rs117070989-C	0.01	2E-10		0.9168	[0.64-1.19] unit increase	Illumina [~ 9000000] (imputed)	N
1637	chr6	137951046	137951047	rs473892	25979521	de Jong K	2015-06-05	J Allergy Clin Immunol	Genome-wide interaction study of gene-by-occupational exposure and effects on FEV1 levels.	Forced expiratory volume in 1 second (occupational environmental exposures interaction)	12,400 individuals	1,436 individuals	6q23.3	OLIG3	rs473892-T	0.46	4E-7	Mineral dust	117.1	[NR] unit increase	Illumina [up to 221663]	N
1637	chr6	137959234	137959235	rs6933404	26394269	Cordell HJ	2015-09-22	Nat Commun	International genome-wide meta-analysis identifies new primary biliary cirrhosis risk loci and targetable pathogenic pathways.	Primary biliary cholangitis	2,764 European ancestry cases, 10,475 European ancestry controls	3,716 European ancestry cases,  4,261 European ancestry controls	6q23.3	LOC102723649, LOC442263, OLIG3, TNFAIP3	rs6933404-C	NR	1E-10		1.18	[1.09-1.27]	Illumina [1143634] (imputed)	N
1637	chr6	137959234	137959235	rs6933404	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	6q23.3	NR	rs6933404-?	NR	6E-15	(EA)			Affymetrix, Illumina [~ 9000000] (imputed)	N
1637	chr6	137959234	137959235	rs6933404	24097067	Lessard CJ	2013-11-01	Nat Genet	Variants at multiple loci implicated in both innate and adaptive immune responses are associated with Sjogren's syndrome.	Sjogren's syndrome	395 European ancestry cases, 1,975 European ancestry controls	1,243 European ancestry cases, 4,779 European ancestry controls	6q23.3	TNFAIP3	rs6933404-C	0.21	7E-8		1.29	[1.13-1.47]	Illumina [648937]	N
1637	chr6	137959454	137959455	rs631204	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	6q23.3	OLIG3	rs631204-A	NR	5E-25		1.1127	NR	Affymetrix, Illumina [8278136] (imputed)	N
1637	chr6	137962654	137962655	rs7769192	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	6q23.3	intergenic	rs7769192-G	0.54	3E-9	(conditioned on rs67297943)	1.08		Illumina [161311]	N
1637	chr6	137963073	137963074	rs9494840	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	6q23.3	intergenic	rs9494840-?	NR	3E-9	(subset analysis)			Illumina [130052]	N
1637	chr6	137967213	137967214	rs13192841	21833088	Sawcer S	2011-08-11	Nature	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	6q23.3	OLIG3	rs13192841-A	NR	1E-8	(Conditioned on rs17066096)	1.1	[1.09-1.12]	Illumina [465434]	N
1637	chr6	137972452	137972453	rs115754734	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	6q23.3	NR	rs115754734-?	NR	4E-6		10666.541	NR unit decrease	Illumina [2379855]	N
1637	chr6	137973067	137973068	rs2327832	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	8,021 European ancestry cases, 16,489 European ancestry controls	NA	6q23.3		rs2327832-G	NR	2E-10		0.161159	[0.11-0.21] unit increase	NR [5054572] (imputed)	N
1637	chr6	137973067	137973068	rs2327832	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls	NA	6q23.3	OLIG3, LOC100130476	rs2327832-?	NR	2E-13		1.22	[1.15-1.28]	Illumina [at least 5000000] (imputed)	N
1637	chr6	137973067	137973068	rs2327832	20190752	Dubois PC	2010-02-28	Nat Genet	Multiple common variants for celiac disease influencing immune gene expression.	Celiac disease	4,533 European ancestry cases, 10,750 European ancestry controls	4,918 European ancestry cases, 5,684 European ancestry controls	6q23.3	TNFAIP3	rs2327832-G	0.22	4E-19		1.23	[1.17-1.28]	Illumina [292387]	N
1637	chr6	137973831	137973832	rs928722	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	6q23.3	intergenic	rs928722-?	NR	4E-14	(subset analysis)			Illumina [130052]	N
1637	chr6	137981583	137981584	rs1002658	30194254	Sud A	2018-09-07	Blood	Genome-wide association study implicates immune dysfunction in the development of Hodgkin lymphoma.	Hodgkin's lymphoma	5,325 European ancestry cases, 22,425 European ancestry controls	NA	6q23.3	OLIG3, TNFAIP3	rs1002658-T	0.18	3E-8		1.19	[1.12-1.26]	Illumina [> 10000000] (imputed)	N
1637	chr6	137996133	137996134	rs651973	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	6q23.3	RP11-95M15.1	rs651973-A	0.427335	2E-12		0.015677439	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1637	chr6	137996133	137996134	rs651973	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	6q23.3	RP11-95M15.1	rs651973-A	0.427348	7E-12		0.015293652	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1637	chr6	138000487	138000488	rs11314585	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	6q23.3		rs11314585-C	NR	6E-13		0.0186	[0.014-0.024] unit increase	Affymetrix, Illumina [20529698] (imputed)	N
1637	chr6	138002174	138002175	rs6927172	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	6q23.3	TNFAIP3	rs6927172-C	0.785547	6E-11		1.0489887	[1.034094561364-1.06409746234829]	NR [9572556] (imputed)	N
1637	chr6	138002174	138002175	rs6927172	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	6q23.3	OLIG3, LOC100130476	rs6927172-?	NR	3E-13		1.067	[1.05-1.08]	Affymetrix [9000000] (imputed)	N
1637	chr6	138002174	138002175	rs6927172	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	6q23.3	OLIG3, LOC100130476	rs6927172-C	NR	2E-10		1.053	[1.04-1.07]	Affymetrix [9000000] (imputed)	N
1637	chr6	138002636	138002637	rs10499194	17982456	Plenge RM	2007-11-04	Nat Genet	Two independent alleles at 6q23 associated with risk of rheumatoid arthritis.	Rheumatoid arthritis	397 European ancestry cases, 1,211 controls	1,408 cases, 2,426 controls, 875 European ancestry cases, 832 European ancestry controls	6q23.3	TNFAIP3, OLIG3	rs10499194-C	0.71	1E-9		1.33	[1.15-1.52]	Affymetrix [79853]	N
1637	chr6	138003604	138003605	rs12665429	34127860	Robertson CC	2021-06-14	Nat Genet	Fine-mapping, trans-ancestral and genomic analyses identify causal variants, cells, genes and drug targets for type 1 diabetes.	Type 1 diabetes	20,065 European ancestry cases, 33,065 European ancestry controls, 1,045 other-admixed ancestry cases, 1,103 other-admixed ancestry controls, 1,043 African ancestry cases, 3,206 African ancestry controls	NA	6q23.3	TNFAIP3	rs12665429-C	0.37	1E-13		0.907		Illumina [715631] (imputed)	N
1637	chr6	138003604	138003605	rs12665429	34127860	Robertson CC	2021-06-14	Nat Genet	Fine-mapping, trans-ancestral and genomic analyses identify causal variants, cells, genes and drug targets for type 1 diabetes.	Type 1 diabetes	20,065 European ancestry cases, 33,065 European ancestry controls, 1,045 other-admixed ancestry cases, 1,103 other-admixed ancestry controls, 1,043 African ancestry cases, 3,206 African ancestry controls	NA	6q23.3	TNFAIP3	rs12665429-C	0.37	1E-13		0.907		Illumina [715631] (imputed)	N
1637	chr6	138003821	138003822	rs11757201	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6q23.3		rs11757201-C	0.23433099999999996	2E-27		1.0577778	[1.04-1.06]	Affymetrix, Illumina [9851866] (imputed)	N
1637	chr6	138003821	138003822	rs11757201	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Autoimmune traits	approximately 459,000 European ancestry individuals	NA	6q23.3		rs11757201-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1637	chr6	138003821	138003822	rs11757201	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Rheumatoid arthritis	15,523 European ancestry cases, 22,308 European ancestry controls	NA	6q23.3	AL357060.1	rs11757201-C	0.208	3E-11		1.1390687		Illumina [252970]	N
1637	chr6	138003821	138003822	rs11757201	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Celiac disease	11,489 European ancestry cases, 22,308 European ancestry controls	NA	6q23.3	AL357060.1	rs11757201-C		4E-7		1.223361		Illumina [252970]	N
1637	chr6	138003821	138003822	rs11757201	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Autoimmune traits (pleiotropy)	11,489 European ancestry cases with celiac disease, 15,523 European ancestry cases with rheumatoid arthritis, 3,477 European ancestry cases with systemic sclerosis, 6,670 European ancestry cases with type 1 diabetes, 22,308 European ancestry controls	NA	6q23.3	TNFAIP3	rs11757201-C	NA	1E-11				Illumina [252970]	N
1637	chr6	138003821	138003822	rs11757201	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6q23.3	OLIG3, TNFAIP3	rs11757201-C	0.2	3E-8		1.06	[1.05-1.07]	Illumina [at least 560000] (imputed)	N
1637	chr6	138003821	138003822	rs11757201	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6q23.3	OLIG3, TNFAIP3	rs11757201-?	NR	3E-8		1.0570824	[1.04-1.08]	Illumina [13757430] (imputed)	N
1637	chr6	138004709	138004710	rs585925	28322283	Chibnik LB	2017-03-21	Mol Psychiatry	Susceptibility to neurofibrillary tangles: role of the PTPRD locus and limited pleiotropy with other neuropathologies.	Diffuse plaques	909 European ancestry individuals	369 individuals	6q23.3		rs585925-T	0.98	8E-6	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1637	chr6	138005514	138005515	rs17264332	33608531	Wu Y	2021-02-19	Nat Commun	GWAS of peptic ulcer disease implicates Helicobacter pylori infection, other gastrointestinal disorders and depression.	Inflammatory bowel disease	7,045 European ancestry cases, 449,282 European ancestry controls	NA	6q23.3	NR	rs17264332-A	0.78	3E-9		0.89	[NR]	NR [8546065] (imputed)	N
1637	chr6	138005514	138005515	rs17264332	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	6q23.3	TNFAIP3	rs17264332-A	0.79	2E-10				NR [> 9500000] (imputed)	N
1637	chr6	138005514	138005515	rs17264332	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	6q23.3	TNFAIP3	rs17264332-A	NR	1E-17		0.0499432	[-0.21057-0.31046] unit decrease	Illumina [8380626] (imputed)	N
1637	chr6	138005514	138005515	rs17264332	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	6q23.3	TNFAIP3	rs17264332-A	0.79	7E-19	(EA)	0.16059	[0.13-0.2] unit decrease	Illumina [8380626] (imputed)	N
1637	chr6	138005514	138005515	rs17264332	26546613	Gutierrez-Achury J	2016-01-01	Hum Mol Genet	Functional implications of disease-specific variants in loci jointly associated with coeliac disease and rheumatoid arthritis.	Celiac disease and Rheumatoid arthritis	371 South Asian ancestry celiac disease cases, 3,138 European ancestry celiac disease cases,  4,418 European ancestry rheumatoid arthritis cases,  509 South Asian ancestry celiac disease controls, 2,473 European ancestry celiac disease controls, 3,300 European ancestry rheumatoid arthritis controls, 8,872 celiac disease cases, 9,401 rheumatoid arthritis cases, 4,845 celiac disease controls, 9,627 rheumatoid arthritis controls	NA	6q23.3	TNFAIP3, OLIG3, RP11-356I2.4	rs17264332-?	NR	3E-27		1.19		Illumina [109572]	N
1637	chr6	138005514	138005515	rs17264332	22057235	Trynka G	2011-11-06	Nat Genet	Dense genotyping identifies and localizes multiple common and rare variant association signals in celiac disease.	Celiac disease	11,812 European ancestry cases, 229 Indian ancestry cases, 11,837 European ancestry controls, 391 Indian ancestry controls	NA	6q23.3	OLIG3, TNFAIP3	rs17264332-G	0.211	5E-30		1.29		Illumina [139553]	N
1637	chr6	138006503	138006504	rs6920220	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	6q23.3	NR	rs6920220-G	0.778123	7E-18		0.0211492	[0.016-0.026] unit decrease	NR [NR]	N
1637	chr6	138006503	138006504	rs6920220	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Ulcerative colitis	12,366 European and unknown ancestry cases, 33,609 European and unknown ancestry controls	NA	6q23.3	Intergenic	rs6920220-?		3E-15				Illumina [9578670] (imputed)	N
1637	chr6	138006503	138006504	rs6920220	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	6q23.3	Intergenic	rs6920220-?		1E-8				Illumina [9725440] (imputed)	N
1637	chr6	138006503	138006504	rs6920220	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	6q23.3	NR	rs6920220-A	0.2086	5E-22	(EA)	1.1582799	[1.13-1.19]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1637	chr6	138006503	138006504	rs6920220	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	6q23.3	NR	rs6920220-A	0.2086	1E-14	(EA)	1.0993968	[1.08-1.12]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1637	chr6	138006503	138006504	rs6920220	24532676	Kim K	2014-02-14	Ann Rheum Dis	High-density genotyping of immune loci in Koreans and Europeans identifies eight new rheumatoid arthritis risk loci.	Rheumatoid arthritis (ACPA-positive)	2,234 Korean ancestry cases, 7,065 Korean ancestry controls, 10,288 European ancestry cases, 35,502 European ancestry controls	NA	6q23.3	OLIG3, TNFAIP3	rs6920220-A	0.22	2E-18		1.19	[1.15-1.24]	Illumina [133816] (imputed)	N
1637	chr6	138006503	138006504	rs6920220	24449572	Orozco G	2014-01-01	Arthritis Rheumatol	Novel rheumatoid arthritis susceptibility locus at 22q12 identified in an extended UK genome-wide association study.	Rheumatoid arthritis	3,034 European ancestry cases, 5,271 European ancestry controls	4,726 European ancestry cases, 2,625 European ancestry controls	6q23.3	TNFAIP3	rs6920220-?		3E-8		1.23	[1.14-1.32]	Affymetrix, Illumina [1831729] (imputed)	N
1637	chr6	138006503	138006504	rs6920220	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis (ACPA-positive)	up to 9,585 European ancestry cases, up to 33,742 European ancestry controls	NA	6q23.3	TNFAIP3	rs6920220-A	0.2	4E-18		1.2026	(Immunochip only)	Illumina [129464] (imputed)	N
1637	chr6	138006503	138006504	rs6920220	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis	up to 13,838 European ancestry cases, up to 33,742 European ancestry controls	NA	6q23.3	TNFAIP3	rs6920220-A	0.2	4E-15		1.1509	(Immunochip only)	Illumina [129464] (imputed)	N
1637	chr6	138006503	138006504	rs6920220	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	6q23.3	TNFAIP3	rs6920220-A	0.206	1E-21		1.102	[1.064-1.141]	Affymetrix, Illumina [1230000] (imputed)	N
1637	chr6	138006503	138006504	rs6920220	22936693	Juran BD	2012-08-29	Hum Mol Genet	Immunochip analyses identify a novel risk locus for primary biliary cirrhosis at 13q14, multiple independent associations at four established risk loci and epistasis between 1p31 and 7q32 risk variants.	Primary biliary cirrhosis	2,216 European ancestry cases, 5,594 Europen ancestry controls	NA	6q23.3	NR	rs6920220-A		1E-6		1.29	[1.16-1.43]	Illumina [109812]	N
1637	chr6	138006503	138006504	rs6920220	21297633	Anderson CA	2011-02-06	Nat Genet	Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47.	Ulcerative colitis	6,687 European ancestry cases, 19,718 European ancestry controls	9,628 European ancestry cases, 12,917 European ancestry controls	6q23.3	intergenic	rs6920220-A	0.21	8E-17		1.14	[1.09-1.20]	Affymetrix, Illumina [~ 1100000] (imputed)	N
1637	chr6	138006503	138006504	rs6920220	20453842	Stahl EA	2010-05-09	Nat Genet	Genome-wide association study meta-analysis identifies seven new rheumatoid arthritis risk loci.	Rheumatoid arthritis	5,539 European ancestry cases, 20,169 European ancestry controls	6,768 European ancestry cases, 8,806 European ancestry controls	6q23.3	TNFAIP3	rs6920220-A	0.22	9E-13		1.22	[1.16-1.29]	Affymetrix, Illumina [~ 2716259] (imputed)	N
1637	chr6	138006503	138006504	rs6920220	19838195	Gateva V	2009-11-01	Nat Genet	A large-scale replication study identifies TNIP1, PRDM1, JAZF1, UHRF1BP1 and IL10 as risk loci for systemic lupus erythematosus.	Systemic lupus erythematosus	1,310 European ancestry cases, 7,859 European ancestry controls	1,963 European ancestry cases, 4,329 European ancestry controls	6q23.3	TNFAIP3	rs6920220-A	0.21	4E-7		1.17	[1.10-1.25]	Illumina [~ 2100000] (imputed)	N
1637	chr6	138006503	138006504	rs6920220	18794853	Raychaudhuri S	2008-09-14	Nat Genet	Common variants at CD40 and other loci confer risk of rheumatoid arthritis.	Rheumatoid arthritis	3,393 European ancestry cases, 12,460 European ancestry controls	3,929 European ancestry cases, 5,807 European ancestry controls	6q23.3	TNFIP3, OLIG3	rs6920220-?	0.22	2E-9		1.24	[1.16-1.32]	Affymetrix, Illumina [at least 315971] (imputed)	N
1637	chr6	138006503	138006504	rs6920220	17982456	Plenge RM	2007-11-04	Nat Genet	Two independent alleles at 6q23 associated with risk of rheumatoid arthritis.	Rheumatoid arthritis	397 European ancestry cases, 1,211 controls	1,408 cases, 2,426 controls, 875 European ancestry cases, 832 European ancestry controls	6q23.3	TNFAIP3, OLIG3	rs6920220-?	0.20	1E-7		1.22	[NR]	Affymetrix [79853]	N
1638	chr6	138028126	138028127	rs661905	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	6q23.3	NR	rs661905-T	NR	2E-6		0.1317	[0.077-0.186] unit increase	Illumina [11133794] (imputed)	N
1638	chr6	138038904	138038905	rs514475	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Inflammatory skin disease	2,079 European ancestry atopic dermatitis cases, 4,212 European ancestry psoriasis cases, 11,899 European ancestry controls	NA	6q23.3	AL357060.1	rs514475-?	NR	6E-8	(Psoriasis)			Affymetrix, Illumina [~ 5200000]	N
1638	chr6	138053202	138053203	rs72978754	33831438	Williams JE	2021-04-05	Genomics	Key genetic variants associated with variation of milk oligosaccharides from diverse human populations.	Human milk oligosaccharide concentration (lacto-N-fucopentaose III) in non-secretors	90 European, Sub-Saharan African, Hispanic or unknown ancestry individuals	NA	6q23.3		rs72978754-?	NR	5E-9				Illumina [1128286]	N
1638	chr6	138083964	138083965	rs77271426	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	6q23.3		rs77271426-?	NR	8E-10				NR [~ 8900000] (imputed)	N
1638	chr6	138118580	138118581	rs681323	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Inflammatory skin disease	2,079 European ancestry atopic dermatitis cases, 4,212 European ancestry psoriasis cases, 11,899 European ancestry controls	NA	6q23.3	TNFAIP3	rs681323-?	NR	7E-8	(Psoriasis)			Affymetrix, Illumina [~ 5200000]	N
1638	chr6	138125828	138125829	rs9385808	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6q23.3		rs9385808-T	0.139661	4E-11		0.02126675	[0.015-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1638	chr6	138132515	138132516	rs10499197	23740937	Martin JE	2013-06-10	Hum Mol Genet	A systemic sclerosis and systemic lupus erythematosus pan-meta-GWAS reveals new shared susceptibility loci.	Systemic lupus erythematosus and Systemic sclerosis	up to 2,761 European ancestry systemic sclerosis cases, 769 European ancestry systemic lupus erythematosus cases, 7,381 European ancestry controls	up to 1,578 European ancestry systemic sclerosis cases, 1,727 European ancestry systemic lupus erythematosus cases, 6,893 European ancestry controls	6q23.3	TNFAIP3	rs10499197-?	NR	2E-9		1.638	[NR]	Illumina [NR]	N
1638	chr6	138147489	138147490	rs112020444	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	6q23.3		rs112020444-T	NR	2E-11		0.0489	[0.035-0.063] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
1639	chr6	138157488	138157489	rs75163761	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6q23.3	NR	rs75163761-T	0.042	5E-24		1.631	[1.54-1.73]	Illumina [11270530] (imputed)	N
1639	chr6	138165689	138165690	rs112975146	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q23.3	NR	rs112975146-C	0.0387914	1E-13				Affymetrix, Illumina [19872809] (imputed)	N
1639	chr6	138171465	138171466	rs9494883	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6q23.3	NR	rs9494883-A	0.96875	1E-10		1.1196954	[1.08-1.16]	Affymetrix [15688218] (imputed)	N
1639	chr6	138171465	138171466	rs9494883	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic disease (asthma, hay fever or eczema)	106,772 European ancestry cases, 239,773 European ancestry controls	83,335 cases, 34,934 controls	6q23.3	NR	rs9494883-A	0.96875	1E-11		1.1149515	[1.08-1.15]	Affymetrix [15688218] (imputed)	N
1639	chr6	138175665	138175666	rs72980761	34854908	Veluchamy A	2021-12-01	JAMA Netw Open	Association of Genetic Variant at Chromosome 12q23.1 With Neuropathic Pain Susceptibility.	Neuropathic pain	4,512 European ancestry cases, 428,489 European ancestry controls	NA	6q23.3		rs72980761-G	0.847	5E-6		0.906	[0.869-0.944]	Affymetrix, Illumina [NR] (imputed)	N
1639	chr6	138179145	138179146	rs17780048	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	6q23.3	LOC100130476	rs17780048-C	NR	5E-12		1.1008	NR	Affymetrix, Illumina [8278136] (imputed)	N
1639	chr6	138185421	138185422	rs654912	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	6q23.3	NR	rs654912-T	0.308295	2E-10		0.0141782	[0.0098-0.0185] unit increase	NR [NR]	N
1639	chr6	138187497	138187498	rs5029924	27193031	Marquez A	2016-05-18	Ann Rheum Dis	A combined large-scale meta-analysis identifies COG6 as a novel shared risk locus for rheumatoid arthritis and systemic lupus erythematosus.	Systemic lupus erythematosus or rheumatoid arthritis	2,237 European ancestry systemic lupus erythematosus cases, 3,911 European ancestry rheumatoid arthritis cases, 10,398 European ancestry controls	1,957 European ancestry systemic lupus erythematosus cases, 13,641 European ancestry rheumatoid arthritis cases, 36,509 European ancestry controls	6q23.3	TNFAIP3	rs5029924-?		2E-19	(same effect)	1.74	[NR]	NR [at least 309839] (imputed)	N
1639	chr6	138195150	138195151	rs5029937	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	6q23.3	TNFAIP3	rs5029937-G	0.97	2E-8		1.081	[1.05-1.11]	Affymetrix, Illumina [8307659] (imputed)	N
1639	chr6	138195150	138195151	rs5029937	19838195	Gateva V	2009-11-01	Nat Genet	A large-scale replication study identifies TNIP1, PRDM1, JAZF1, UHRF1BP1 and IL10 as risk loci for systemic lupus erythematosus.	Systemic lupus erythematosus	1,310 European ancestry cases, 7,859 European ancestry controls	1,963 European ancestry cases, 4,329 European ancestry controls	6q23.3	TNFAIP3	rs5029937-T	0.03	5E-13		1.71	[1.51-1.95]	Illumina [~ 2100000] (imputed)	N
1639	chr6	138195692	138195693	rs643177	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q23.3	NR	rs643177-C	0.752333	4E-14				Affymetrix, Illumina [23114412] (imputed)	N
1639	chr6	138195692	138195693	rs643177	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	6q23.3	NR	rs643177-C	0.726207	4E-16		0.017498	[0.013-0.022] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
1639	chr6	138195692	138195693	rs643177	25903422	Yin X	2015-04-23	Nat Commun	Genome-wide meta-analysis identifies multiple novel associations and ethnic heterogeneity of psoriasis susceptibility.	Psoriasis	3,496 European ancestry cases, 5,186 European ancestry controls, 1,588 Chinese ancestry cases, 3,546 Chinese ancestry controls	5,134 European ancestry cases, 5,633 European ancestry controls, 5,151 Chinese ancestry cases, 5,152 Chinese ancestry controls	6q23.3	TNFAIP3	rs643177-T	0.273	9E-12		1.25	[1.17-1.33]	Illumina [up to 4778154] (imputed)	N
1639	chr6	138195692	138195693	rs643177	25903422	Yin X	2015-04-23	Nat Commun	Genome-wide meta-analysis identifies multiple novel associations and ethnic heterogeneity of psoriasis susceptibility.	Psoriasis	3,496 European ancestry cases, 5,186 European ancestry controls, 1,588 Chinese ancestry cases, 3,546 Chinese ancestry controls	5,134 European ancestry cases, 5,633 European ancestry controls, 5,151 Chinese ancestry cases, 5,152 Chinese ancestry controls	6q23.3	TNFAIP3	rs643177-T	0.273	5E-10	(EA)	1.24	[1.16-1.33]	Illumina [up to 4778154] (imputed)	N
1639	chr6	138195692	138195693	rs643177	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Inflammatory skin disease	2,079 European ancestry atopic dermatitis cases, 4,212 European ancestry psoriasis cases, 11,899 European ancestry controls	NA	6q23.3	TNFAIP3	rs643177-?	NR	9E-16	(Psoriasis)	1.27	[1.20-1.34]	Affymetrix, Illumina [~ 5200000]	N
1639	chr6	138195722	138195723	rs5029939	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	6q23.3	NR	rs5029939-G	NR	2E-13		0.0482	[0.035-0.061] unit increase	Affymetrix [9000000] (imputed)	N
1639	chr6	138195722	138195723	rs5029939	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	6q23.3	TNFAIP3	rs5029939-?	NR	5E-29		1.48	[1.38-1.60]	Illumina [at least 5000000] (imputed)	N
1639	chr6	138195722	138195723	rs5029939	24097066	Li Y	2013-10-06	Nat Genet	A genome-wide association study in Han Chinese identifies a susceptibility locus for primary Sjogren's syndrome at 7q11.23.	Sjogren's syndrome	542 Han Chinese ancestry cases, 1,050 Han Chinese ancestry controls	1,303 Han Chinese ancestry cases, 2,727 Han Chinese ancestry controls	6q23.3	TNFAIP3	rs5029939-G	0.0445	8E-9		1.67	[1.40-1.99]	Affymetrix [556134]	N
1639	chr6	138195722	138195723	rs5029939	19165918	Graham RR	2008-08-01	Nat Genet	Genetic variants near TNFAIP3 on 6q23 are associated with systemic lupus erythematosus.	Systemic lupus erythematosus	431 European ancestry cases, 2,155 European ancestry controls	447 European ancestry trios, 293 trios	6q23.3	TNFAIP3	rs5029939-?	0.03	3E-12		2.28	[NR]	Affymetrix [313238]	N
1639	chr6	138196065	138196066	rs2230926	28314753	Terao C	2017-03-17	Ann Rheum Dis	Transethnic meta-analysis identifies GSDMA and PRDM1 as susceptibility genes to systemic sclerosis.	Systemic sclerosis	700 Japanese ancestry cases, 1,797 Japanese ancestry controls, 564 European ancestry cases, 1,776 European ancestry controls	564 Japanese ancestry cases, 1,863 Japanese ancestry controls, 2,592 European ancestry cases, 9,315 European ancestry controls	6q23.3	TNFAIP3	rs2230926-G		3E-7		0.525	[0.33-0.72] unit increase	Illumina [3610917] (imputed)	N
1639	chr6	138196065	138196066	rs2230926	28314753	Terao C	2017-03-17	Ann Rheum Dis	Transethnic meta-analysis identifies GSDMA and PRDM1 as susceptibility genes to systemic sclerosis.	Systemic sclerosis	700 Japanese ancestry cases, 1,797 Japanese ancestry controls, 564 European ancestry cases, 1,776 European ancestry controls	564 Japanese ancestry cases, 1,863 Japanese ancestry controls, 2,592 European ancestry cases, 9,315 European ancestry controls	6q23.3	TNFAIP3	rs2230926-G		2E-6	(EA)	0.801	[0.48-1.12] unit increase	Illumina [3610917] (imputed)	N
1639	chr6	138196065	138196066	rs2230926	27399966	Morris DL	2016-07-11	Nat Genet	Genome-wide association meta-analysis in Chinese and European individuals identifies ten new loci associated with systemic lupus erythematosus.	Systemic lupus erythematosus	1,659 Chinese ancestry cases, 3,398 Chinese ancestry controls, 4,036 European ancestry cases, 6,959 European ancestry controls	3,043 Chinese ancestry cases, 5,074 Chinese ancestry controls, 2,643 European ancestry cases, 9,032 European ancestry controls	6q23.3	TNFAIP3	rs2230926-?	0.035	2E-16	(EA)	1.75	[NR]	NR [6344733] (imputed)	N
1639	chr6	138196065	138196066	rs2230926	27399966	Morris DL	2016-07-11	Nat Genet	Genome-wide association meta-analysis in Chinese and European individuals identifies ten new loci associated with systemic lupus erythematosus.	Systemic lupus erythematosus	1,659 Chinese ancestry cases, 3,398 Chinese ancestry controls, 4,036 European ancestry cases, 6,959 European ancestry controls	3,043 Chinese ancestry cases, 5,074 Chinese ancestry controls, 2,643 European ancestry cases, 9,032 European ancestry controls	6q23.3	TNFAIP3	rs2230926-?	0.031	1E-12	(Chinese)	2.03	[NR]	NR [6344733] (imputed)	N
1639	chr6	138196065	138196066	rs2230926	26663301	Lessard CJ	2016-05-01	Arthritis Rheumatol	Identification of a Systemic Lupus Erythematosus Risk Locus Spanning ATG16L2, FCHSD2, and P2RY2 in Koreans.	Systemic lupus erythematosus	1,174 Korean ancestry cases, 4,246 Korean ancestry controls	739 Korean ancestry cases,  677 Chinese ancestry cases,  436 Korean ancestry controls, 709 Chinese ancestry controls	6q23.3	PERP, TNFAIP3	rs2230926-?	NR	2E-14		1.93	[1.63-2.28]	Illumina [NR]	N
1639	chr6	138196065	138196066	rs2230926	23273568	Yang W	2012-12-27	Am J Hum Genet	Meta-analysis followed by replication identifies loci in or near CDKN1B, TET3, CD80, DRAM1, and ARID5B as associated with systemic lupus erythematosus in Asians.	Systemic lupus erythematosus	1,656 Han Chinese ancestry cases, 3,394 Han Chinese ancestry controls	3,256 Han Chinese ancestry cases, 5,667 Han Chinese ancestry controls, 453 Thai ancestry cases, 963 Thai ancestry controls	6q23.3	TNFAIP3	rs2230926-G	0.02	1E-13		2.71		Illumina [2100739] (imputed)	N
1639	chr6	138196065	138196066	rs2230926	20453841	Kochi Y	2010-05-09	Nat Genet	A regulatory variant in CCR6 is associated with rheumatoid arthritis susceptibility.	Rheumatoid arthritis	2,303 Japanese ancestry cases, 3,380 Japanese ancestry controls	4,768 Japanese ancestry cases, 17,359 Japanese ancestry controls	6q23.3	TNFAIP3, OLIG3	rs2230926-C	0.07	2E-6		1.31	[1.17-1.46]	Illumina [393217]	N
1639	chr6	138196065	138196066	rs2230926	19838193	Han JW	2009-10-18	Nat Genet	Genome-wide association study in a Chinese Han population identifies nine new susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	1,047 Han Chinese ancestry cases, 1,205 Han Chinese ancestry controls	3,152 Han Chinese ancestry cases, 7,050 Han Chinese ancestry controls	6q23.3	TNFAIP3	rs2230926-C	0.04	1E-17		1.72	[1.52-1.94]	Illumina [493955]	N
1639	chr6	138197505	138197506	rs5029949	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	6q23.3		rs5029949-?	NR	4E-11				NR [~ 8900000] (imputed)	N
1639	chr6	138197823	138197824	rs582757	33385400	Patrick MT	2020-12-29	J Invest Dermatol	Causal relationship and shared genetic loci between psoriasis and type 2 diabetes through trans-disease meta-analysis.	Psoriasis or type 2 diabetes (trans-disease meta-analysis)	11,024 European ancestry psoriasis cases, 74,124 European ancestry diabetes cases, 840,342 European ancestry controls	NA		NR	rs582757-C	NR	3E-13		1.08	NR	NR [8016731] (imputed)	N
1639	chr6	138197823	138197824	rs582757	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA		TNFAIP3	rs582757-?	NR	1E-16	(subset analysis)			Illumina [130052]	N
1639	chr6	138197823	138197824	rs582757	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Psoriasis	4,212 European ancestry cases, 8,032 European ancestry controls	NA		TNFAIP3	rs582757-T	NR	6E-12		1.2468828	[1.21-1.29]	Affymetrix, Illumina, Perlegen [up to 5493100] (imputed)	N
1639	chr6	138197823	138197824	rs582757	23143594	Tsoi LC	2012-12-01	Nat Genet	Identification of 15 new psoriasis susceptibility loci highlights the role of innate immunity.	Psoriasis	10,588 European ancestry cases, 22,806 European ancestry controls	NA		TNFAIP3	rs582757-C	0.273	2E-25		1.23		Illumina [111236] (imputed)	N
1639	chr6	138199416	138199417	rs610604	33385400	Patrick MT	2020-12-29	J Invest Dermatol	Causal relationship and shared genetic loci between psoriasis and type 2 diabetes through trans-disease meta-analysis.	Psoriasis or type 2 diabetes (trans-disease meta-analysis)(opposite effect)	11,024 European ancestry psoriasis cases, 74,124 European ancestry diabetes cases, 840,342 European ancestry controls	NA	6q23.3	NR	rs610604-G		9E-15		1.09		NR [8016731] (imputed)	N
1639	chr6	138199416	138199417	rs610604	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	6q23.3	NR	rs610604-T	0.674437	8E-15		0.015209	[0.011-0.019] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1639	chr6	138199416	138199417	rs610604	26626624	Stuart PE	2015-11-28	Am J Hum Genet	Genome-wide Association Analysis of Psoriatic Arthritis and Cutaneous Psoriasis Reveals Differences in Their Genetic Architecture.	Psoriasis vulgaris	4,007 European ancestry cases, 4,934 European ancestry controls	up to 9,075 European ancestry cases, up to European ancestry 12,726 controls	6q23.3	TNFAIP3	rs610604-G	0.3201	5E-17		1.2	NR	Illumina [up to 11532644] (imputed)	N
1639	chr6	138199416	138199417	rs610604	26626624	Stuart PE	2015-11-28	Am J Hum Genet	Genome-wide Association Analysis of Psoriatic Arthritis and Cutaneous Psoriasis Reveals Differences in Their Genetic Architecture.	Cutaneous psoriasis	1,363 European ancestry cases, 4,934 European ancestry controls	up to 2,969 European ancestry cases, up to European ancestry 14,384 controls	6q23.3	TNFAIP3	rs610604-G	0.3201	8E-11		1.23	NR	Illumina [11532644] (imputed)	N
1639	chr6	138199416	138199417	rs610604	20953190	Strange A	2010-10-17	Nat Genet	A genome-wide association study identifies new psoriasis susceptibility loci and an interaction between HLA-C and ERAP1.	Psoriasis	2,178 European ancestry cases, 5,175 European ancestry controls	3,174 European ancestry cases, 5,464 European ancestry controls	6q23.3	TNFAIP3	rs610604-?	NR	7E-7		1.22	[1.13-1.32]	Illumina [535475]	N
1639	chr6	138199416	138199417	rs610604	19169254	Nair RP	2009-01-25	Nat Genet	Genome-wide scan reveals association of psoriasis with IL-23 and NF-kappaB pathways.	Psoriasis	1,359 European ancestry cases, 1,400 European ancestry controls	5,048 European ancestry cases, 5,041 European ancestry controls	6q23.3	TNFAIP3	rs610604-G	0.32	9E-12		1.19	[NR]	Perlegen [~ 2500000] (imputed)	N
1639	chr6	138207728	138207729	rs1082428	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	6q23.3		rs1082428-?	NR	6E-8				NR [~ 8900000] (imputed)	N
1639	chr6	138216787	138216788	rs674451	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q23.3	NR	rs674451-C	0.278062	3E-13				Affymetrix, Illumina [24649327] (imputed)	N
1639	chr6	138223488	138223489	rs9494892	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Respiratory diseases	approximately 459,000 European ancestry individuals	NA	6q23.3		rs9494892-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1639	chr6	138223489	138223490	rs9494893	32723749	Kwon YC	2020-07-28	Ann Rheum Dis	Genome-wide association study in a Korean population identifies six novel susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis	4,068 Korean ancestry cases, 36,487 Korean ancestry controls	NA	6q23.3	TNFAIP3	rs9494893-?		4E-10		1.36	[1.23-1.49]	Illumina [NR] (imputed)	N
1639	chr6	138225144	138225144	rs572459786	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	6q23.3	TNFAIP3, LOC100130476, LOC100507406	rs572459786-?		4E-6	(heterogeneous)	0.441	[0.25-0.63] unit increase	Illumina [1492601] (imputed)	N
1639	chr6	138225144	138225144	rs572459786	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	6q23.3	TNFAIP3, LOC100130476, LOC100507406	rs572459786-?		2E-6	(dominant)	0.451	[NR] unit increase	Illumina [1492601] (imputed)	N
1639	chr6	138225144	138225144	rs572459786	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	6q23.3	TNFAIP3, LOC100130476, LOC100507406	rs572459786-?		2E-6	(additive)	0.451	[0.27-0.64] unit increase	Illumina [1492601] (imputed)	N
1639	chr6	138227363	138227364	rs7752903	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	6q23.3		rs7752903-G	NR	2E-11		0.029	[0.021-0.037] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
1639	chr6	138227363	138227364	rs7752903	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	6q23.3	TNFAIP3	rs7752903-T	NR	4E-26		0.32137	[0.26-0.38] unit decrease	Illumina [8380626] (imputed)	N
1639	chr6	138227363	138227364	rs7752903	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	6q23.3	TNFAIP3	rs7752903-T	0.97	1E-17	(EA)	0.3383	[0.26-0.42] unit decrease	Illumina [8380626] (imputed)	N
1639	chr6	138227363	138227364	rs7752903	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	6q23.3	TNFAIP3	rs7752903-T	0.93	1E-10	(East Asian)	0.29808	[0.21-0.39] unit decrease	Illumina [8380626] (imputed)	N
1639	chr6	138227363	138227364	rs7752903	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	6q23.3	TNFAIP3	rs7752903-G	0.07	7E-11	(East Asian)	1.34	[1.23-1.46]	Affymetrix, Illumina [up to 9739303] (imputed)	N
1639	chr6	138227363	138227364	rs7752903	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	6q23.3	TNFAIP3	rs7752903-G	0.04	2E-29		1.38	[1.31-1.46]	Affymetrix, Illumina [up to 9739303] (imputed)	N
1639	chr6	138227363	138227364	rs7752903	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	6q23.3	TNFAIP3	rs7752903-G	0.03	2E-20	(EA)	1.41	[1.31-1.52]	Affymetrix, Illumina [up to 9739303] (imputed)	N
1639	chr6	138228519	138228520	rs9494894	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Rheumatoid arthritis	8,255 European ancestry cases, 409,001 European ancestry controls, 5,348 East Asian ancestry cases, 173,268 East Asian ancestry controls	NA	6q23.3		rs9494894-C	NR	2E-8		0.1726	[0.11-0.23] unit increase	Affymetrix, Illumina [25835038] (imputed)	N
1639	chr6	138228519	138228520	rs9494894	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6q23.3	NR	rs9494894-T	0.941	3E-84		0.586	[0.53-0.64]	Illumina [11270530] (imputed)	N
1639	chr6	138230388	138230389	rs7749323	33310728	Ha E	2020-12-11	Ann Rheum Dis	Large-scale meta-analysis across East Asian and European populations updated genetic architecture and variant-driven biology of rheumatoid arthritis, identifying 11 novel susceptibility loci.	Rheumatoid arthritis	14,361 European ancestry cases, 43,923 European ancestry controls, 8,267 East Asian ancestry cases, 244,741 East Asian ancestry controls	NA	6q23.3		rs7749323-A	NR	4E-29		1.33	[1.26-1.4]	NR [13810676] (imputed)	N
1639	chr6	138234288	138234289	rs72980770	27992413	Ji SG	2016-12-19	Nat Genet	Genome-wide association study of primary sclerosing cholangitis identifies new risk loci and quantifies the genetic relationship with inflammatory bowel disease.	Primary sclerosing cholangitis	2,871 European ancestry cases, 12,019 European ancestry controls	1,925 European ancestry cases, 7,936 European ancestry controls	6q23.3	Intergenic	rs72980770-C	0.85	2E-6		1.19	[1.11-1.28]	Affymetrix, Illumina [7891602] (imputed)	N
1639	chr6	138234777	138234778	rs9494895	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systemic lupus erythematosus	647 European ancestry cases, 482,264 European ancestry controls, 317 East Asian ancestry cases, 175,937 East Asian ancestry controls	NA	6q23.3		rs9494895-T	NR	2E-8		0.6663	[0.43-0.9] unit increase	Affymetrix, Illumina [25844568] (imputed)	N
1639	chr6	138237988	138237989	rs77000060	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls	NA	6q23.3	TNFAIP3	rs77000060-?	NR	2E-29		1.89	[1.69-2.11]	Illumina [at least 5000000] (imputed)	N
1639	chr6	138239433	138239434	rs6933987	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Psoriasis vulgaris	5,072 European ancestry cases, 478,102 European ancestry controls, 206 East Asian ancestry cases, 172,289 East Asian ancestry controls	NA	6q23.3		rs6933987-T	NR	2E-8		0.1258	[0.082-0.17] unit increase	Affymetrix, Illumina [25844455] (imputed)	N
1639	chr6	138242436	138242437	rs6932056	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	6q23.3		rs6932056-?	NR	4E-16				NR [~ 8900000] (imputed)	N
1639	chr6	138242436	138242437	rs6932056	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	2,018 European ancestry cases, 6,925 European ancestry controls	6q23.3	TNFAIP3	rs6932056-C		2E-31		1.83	[1.65-2.02]	Illumina [644674]	N
1639	chr6	138242623	138242628	rs139299350	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	6q23.3		rs139299350-A	NR	8E-9		0.0151	[0.01-0.02] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
1639	chr6	138242623	138242628	rs139299350	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6q23.3	NR	rs139299350-A	0.273309	2E-10		0.015727391	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1639	chr6	138242623	138242628	rs139299350	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	6q23.3		rs139299350-A	0.273302	1E-11		0.01687894	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1639	chr6	138243738	138243739	rs58721818	30573655	Acosta-Herrera M	2018-12-20	Ann Rheum Dis	Genome-wide meta-analysis reveals shared new loci in systemic seropositive rheumatic diseases.	Systemic seropositive rheumatic diseases (Systemic sclerosis or systemic lupus erythematosus or rheumatoid arthritis or idiopathic inflammatory myopathies)	up to 4,595 European ancestry rheumatoid arthritis cases, up to 3,154 European ancestry systemic lupus erythematosus cases, up to 2,281 European ancestry systemic sclerosis cases, up to 1,674 European ancestry idiopathic inflammatory myopathy cases, 19,704 European ancestry controls	NA	6q23.3	TNFAIP3	rs58721818-T	NR	5E-23		1.64	[1.46-1.84]	Illumina [6450125] (imputed)	N
1639	chr6	138243738	138243739	rs58721818	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Rheumatoid arthritis	15,523 European ancestry cases, 22,308 European ancestry controls	NA	6q23.3	intergenic	rs58721818-T	0.033	2E-9		1.348089		Illumina [252970]	N
1639	chr6	138243738	138243739	rs58721818	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Autoimmune traits (pleiotropy)	11,489 European ancestry cases with celiac disease, 15,523 European ancestry cases with rheumatoid arthritis, 3,477 European ancestry cases with systemic sclerosis, 6,670 European ancestry cases with type 1 diabetes, 22,308 European ancestry controls	NA	6q23.3	TNFAIP3	rs58721818-T	NA	5E-10				Illumina [252970]	N
1639	chr6	138243738	138243739	rs58721818	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	NA	6q23.3	TNFAIP3	rs58721818-T		3E-19		1.82	[NR]	Illumina [> 644674] (imputed)	N
1639	chr6	138243738	138243739	rs58721818	24532676	Kim K	2014-02-14	Ann Rheum Dis	High-density genotyping of immune loci in Koreans and Europeans identifies eight new rheumatoid arthritis risk loci.	Rheumatoid arthritis (ACPA-positive)	2,234 Korean ancestry cases, 7,065 Korean ancestry controls, 10,288 European ancestry cases, 35,502 European ancestry controls	NA	6q23.3	TNFAIP3	rs58721818-A	0.03	1E-17		1.4	[1.30-1.52]	Illumina [133816] (imputed)	N
1639	chr6	138244815	138244816	rs67297943	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	6q23.3	TNFAIP3	rs67297943-A	0.8	6E-13		1.11		Illumina [161311]	N
1639	chr6	138262772	138262773	rs17781283	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	6q23.3	RP11-240M16.1	rs17781283-A	0.03344	1E-12		0.043991305	[0.032-0.056] unit decrease	Affymetrix [93095623] (imputed)	N
1639	chr6	138262772	138262773	rs17781283	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6q23.3	RP11-240M16.1	rs17781283-A	0.033439	8E-13		0.044452608	[0.032-0.057] unit decrease	Affymetrix [93095623] (imputed)	N
1639	chr6	138262772	138262773	rs17781283	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	6q23.3	NR	rs17781283-A	0.033718	2E-15		0.044348	[0.033-0.055] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
1639	chr6	138262772	138262773	rs17781283	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Ejection fraction in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	6q23.3	NR	rs17781283-?	NR	2E-6				Affymetrix [5486770] (imputed)	N
1639	chr6	138266684	138266685	rs9321637	23247143	Yu B	2012-12-16	Circ Cardiovasc Genet	Association of genome-wide variation with highly sensitive cardiac troponin-T levels in European Americans and Blacks: a meta-analysis from atherosclerosis risk in communities and cardiovascular health studies.	Cardiac Troponin-T levels	9,491 European ancestry individuals, up to 2,053 African American individuals	NA	6q23.3	TNFAIP3	rs9321637-C	NR	8E-6	(Dichotomous variable)	2.17	[1.56-3.13]	Affymetrix, Illumina [~ 2500000] (imputed)	N
1640	chr6	138289847	138289848	rs9373203	33310728	Ha E	2020-12-11	Ann Rheum Dis	Large-scale meta-analysis across East Asian and European populations updated genetic architecture and variant-driven biology of rheumatoid arthritis, identifying 11 novel susceptibility loci.	Rheumatoid arthritis	14,361 European ancestry cases, 43,923 European ancestry controls, 8,267 East Asian ancestry cases, 244,741 East Asian ancestry controls	NA	6q23.3		rs9373203-T	NR	2E-9	(conditional on rs7749323 and rs17264332)	0.073	[0.049-0.097] unit increase	NR [13810676] (imputed)	N
1640	chr6	138297839	138297840	rs4896307	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Phosphatidylcholine-ether levels	2,045 European ancestry individuals	NA	6q23.3	TNFAIP3	rs4896307-T	NR	3E-8	(PCO(16:1;0-16:0;0))	0.2273	[0.15-0.31] unit decrease	Illumina [~ 9300000] (imputed)	N
1640	chr6	138339833	138339834	rs4896310	28090653	Liu Y	2017-01-16	Clin Pharmacol Ther	Genome-Wide Study Links PNPLA3 Variant With Elevated Hepatic Transaminase After Acute Lymphoblastic Leukemia Therapy.	Alanine aminotransferase (ALT) levels after remission induction therapy in actute lymphoblastic leukemia (ALL)	up to 488 European ancestry cases, up to 111 African American cases, up to 60 Hispanic cases, up to 56 other ancestry cases	NA	6q23.3	PERP	rs4896310-A		1E-6	(AA)	2.11	[1.11-4.03]	Affymetrix, Illumina [NR] (imputed)	N
1641	chr6	138412611	138412612	rs8085	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Yeast infection	52,218 European ancestry cases, 10,235 European ancestry controls	NA	6q23.3	NR	rs8085-?	NR	1E-6		0.0308	[0.018-0.043] unit increase	Illumina [at least 560000] (imputed)	N
1641	chr6	138426031	138426032	rs1556640	23568457	Wade TD	2013-04-09	Int J Eat Disord	Genetic variants associated with disordered eating.	Bulimia nervosa	151 European ancestry female cases, 2,291 European ancestry female controls	NA		PERP	rs1556640-T	0.88	2E-6		0.075	[0.044-0.106] unit decrease	Illumina [6150213] (imputed)	N
1643	chr6	138750396	138750397	rs17067569	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6q24.1	KIAA1244	rs17067569-?	NR	9E-6	(CE 20:4)	1.610042	[0.9-2.32] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1643	chr6	138754055	138754056	rs150185209	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6q24.1	NR	rs150185209-T	0.01394	8E-9	(USP5)	0.1472	NR unit increase	Illumina [1671387] (imputed)	N
1644	chr6	138856439	138856440	rs9389588	31194736	Tiensuu H	2019-06-13	PLoS Genet	Risk of spontaneous preterm birth and fetal growth associates with fetal SLIT2.	Spontaneous preterm birth without premature rupture of membranes	101 Finnish ancestry infant cases, 419 Finnish ancestry infant controls	NA	6q24.1	NHSL1	rs9389588-?	NR	2E-6		3.030303		Illumina [6778521] (imputed)	N
1644	chr6	138864488	138864489	rs7742292	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	6q24.1	NR	rs7742292-C	0.4778	5E-11		0.0261	[0.018-0.034] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1644	chr6	138865323	138865324	rs4895532	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	6q24.1	NR	rs4895532-T	0.3682	3E-7	(Pericalcarine)	5.4898605	[3.39-7.59] unit decrease	Affymetrix, Illumina [NR]	N
1644	chr6	138866267	138866268	rs9376354	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	8,072 individuals	NA	6q24.1		rs9376354-T	0.33	2E-7				NR [13131314] (imputed)	N
1644	chr6	138866267	138866268	rs9376354	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	5,199 individuals	NA	6q24.1		rs9376354-T	0.33	5E-7				Affymetrix [9061022] (imputed)	N
1644	chr6	138866267	138866268	rs9376354	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	6q24.1		rs9376354-T	0.33	5E-110		22.28	z score increase	Affymetrix [9061022] (imputed)	N
1644	chr6	138866267	138866268	rs9376354	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	6q24.1		rs9376354-T	0.33	2E-33		12.06	z score increase	Affymetrix [9061022] (imputed)	N
1644	chr6	138866267	138866268	rs9376354	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	6q24.1		rs9376354-T	0.33	9E-41		13.37	z score increase	Affymetrix [9061022] (imputed)	N
1644	chr6	138866267	138866268	rs9376354	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	6q24.1	NR	rs9376354-T	0.28	1E-17				NR [9056863] (imputed)	N
1644	chr6	138866267	138866268	rs9376354	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	6q24.1	NR	rs9376354-T	0.28	1E-17				NR [9056863] (imputed)	N
1644	chr6	138866267	138866268	rs9376354	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 3)	19,670 European ancestry individuals	NA	6q24.1		rs9376354-?	NR	2E-30				NR [9705931] (imputed)	N
1644	chr6	138866267	138866268	rs9376354	32963231	Hofer E	2020-09-22	Nat Commun	Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.	Cortical surface area	18,617 European and African American ancestry individuals	22,363 European ancestry individuals	6q24.1	NHSL1	rs9376354-?		7E-19	(Precuneus)			Affymetrix, Illumina [NR] (imputed)	N
1644	chr6	138866267	138866268	rs9376354	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	6q24.1	NHSL1	rs9376354-?		4E-15				NR [7428630] (imputed)	N
1644	chr6	138868515	138868516	rs9399245	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (min-P)	26,502 European ancestry individuals	NA	6q24.1	VANGL2	rs9399245-?		3E-15				NR [7428630] (imputed)	N
1644	chr6	138868515	138868516	rs9399245	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	6q24.1	NR	rs9399245-?		2E-20				NR [7428630] (imputed)	N
1644	chr6	138868515	138868516	rs9399245	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (min-P)	26,502 European ancestry individuals	NA	6q24.1	PKDCC	rs9399245-?		1E-14				NR [7428630] (imputed)	N
1644	chr6	138868515	138868516	rs9399245	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	6q24.1	NR	rs9399245-T	0.6937	1E-15	(Precuneus)	19.166681	[14.46-23.87] unit decrease	Affymetrix, Illumina [NR]	N
1644	chr6	138869567	138869568	rs4620141	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	8,620 individuals (<25 years old)	NA	6q24.1		rs4620141-T	NR	9E-6		0.0187	[0.011-0.027] mm decrease	Affymetrix, Illumina [8936601] (imputed)	N
1644	chr6	138869567	138869568	rs4620141	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	35,422 individuals (>=25 years old)	NA	6q24.1		rs4620141-T	NR	4E-8		0.0123	[0.0082-0.0164] mm decrease	Affymetrix, Illumina [8936601] (imputed)	N
1644	chr6	138869567	138869568	rs4620141	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	29,580 European ancestry individuals, 14,462 Asian ancestry individuals	88,218 European ancestry individuals	6q24.1		rs4620141-T	0.36	2E-20		0.008	mm decrease	Affymetrix, Illumina [8936601] (imputed)	N
1644	chr6	138869567	138869568	rs4620141	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	29,580 European ancestry individuals	NA	6q24.1		rs4620141-T	0.36	3E-7		0.013	mm decrease	Affymetrix, Illumina [8936601] (imputed)	N
1644	chr6	138869567	138869568	rs4620141	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	14,462 Asian ancestry individuals	NA	6q24.1		rs4620141-T	0.58	3E-6		0.015	mm decrease	Affymetrix, Illumina [7861976] (imputed)	N
1644	chr6	138922043	138922044	rs7758889	21844884	Wheeler HE	2011-08-16	Pharmacogenomics J	Genome-wide meta-analysis identifies variants associated with platinating agent susceptibility across populations.	Response to platinum-based chemotherapy (cisplatin)	176 Sub-Saharan African ancestry lymphoblastoid cell lines, 83 African ancestry lymphoblastoid cell lines, 175 East Asian ancestry lymphoblastoid cell lines, 174 European ancestry lymphoblastoid cell lines	NA	6q24.1	intergenic	rs7758889-?		7E-7				NR [~ 3000000] (imputed)	N
1644	chr6	138922043	138922044	rs7758889	21844884	Wheeler HE	2011-08-16	Pharmacogenomics J	Genome-wide meta-analysis identifies variants associated with platinating agent susceptibility across populations.	Response to platinum-based chemotherapy (carboplatin)	176 Sub-Saharan African ancestry lymphoblastoid cell lines, 83 African ancestry lymphoblastoid cell lines, 175 East Asian ancestry lymphoblastoid cell lines, 174 European ancestry lymphoblastoid cell lines	NA	6q24.1	intergenic	rs7758889-?		9E-7				NR [~ 3000000] (imputed)	N
1645	chr6	139067346	139067347	rs35897533	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	6q24.1	NR	rs35897533-?	NR	3E-6		0.150654	[0.087-0.214] unit decrease	NR [13958389] (imputed)	N
1646	chr6	139122239	139122240	rs10457678	26621817	Cheng TH	2015-12-01	Sci Rep	Meta-analysis of genome-wide association studies identifies common susceptibility polymorphisms for colorectal and endometrial cancer near SH2B3 and TSHZ1.	Colorectal or endometrial cancer	5,725 European ancestry colorectal carcinoma cases, 2,212 European ancestry endometrial carcinoma cases, 13,396 European ancestry controls	4,330 European ancestry endometrial carcinoma cases, 26,849 European ancestry controls	6q24.1	ECT2L	rs10457678-A	0.773	4E-7	(same direction)	1.1	[1.06-1.14]	Illumina [up to 6000000] (imputed)	N
1646	chr6	139185696	139185697	rs2698744	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	6q24.1	NR	rs2698744-?	NR	1E-7				Affymetrix [NR]	N
1647	chr6	139205385	139205386	rs9376382	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	6q24.1	REPS1	rs9376382-C	0.599	2E-8		1.04	[1.03-1.05]	Affymetrix, Illumina [11800000] (imputed)	N
1647	chr6	139226629	139226630	rs2750411	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	6q24.1	REPS1	rs2750411-T	0.5081	1E-8		0.0108389	[0.0071-0.0146] unit increase	Affymetrix [NR] (imputed)	N
1647	chr6	139226718	139226719	rs2698737	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	6q24.1	REPS1	rs2698737-C	0.508534	3E-8		0.0108928	[0.007-0.0148] unit increase	Affymetrix [NR] (imputed)	N
1647	chr6	139243140	139243141	rs78570658	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Non-albumin protein levels	98,538 Japanese ancestry individuals	NA	6q24.1	NR	rs78570658-?	NR	2E-8		0.03094	[0.02-0.042] unit decrease novel	Illumina [6108953] (imputed)	N
1647	chr6	139243140	139243141	rs78570658	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Albumin-globulin ratio	98,626 Japanese ancestry individuals	NA	6q24.1	NR	rs78570658-?	NR	1E-8		0.03135	[0.021-0.042] unit increase novel	Illumina [6108953] (imputed)	N
1647	chr6	139250124	139250125	rs17068112	25897834	Biernacka JM	2015-04-21	Transl Psychiatry	The International SSRI Pharmacogenomics Consortium (ISPC): a genome-wide association study of antidepressant treatment response.	Response to serotonin reuptake inhibitors in major depressive disorder	298 European ancestry cases, 567 Asian ancestry cases, 1529 European and other ancestry cases	NA	6q24.1	REPS1	rs17068112-?	NR	3E-6	(% Change in score)	0.26	[NR] unit increase	Illumina [~ 7000000] (imputed)	N
1647	chr6	139292682	139292683	rs9376390	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	6q24.1	NR	rs9376390-?	NR	7E-6		0.0079142	[0.0045-0.0114] unit increase	Affymetrix [805426] (imputed)	N
1647	chr6	139311364	139311365	rs9389642	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Coronary artery disease in diabetes	361 Korean ancestry cases, 4,951 Korean ancestry controls	NA	6q24.1		rs9389642-T	0.2645	3E-6		0.6342	[0.5237-0.768]	Affymetrix [7975321] (imputed)	N
1647	chr6	139317827	139317827	rs66883945	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	6q24.1		rs66883945-GC	NR	1E-11		0.0187	[0.013-0.024] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
1647	chr6	139317827	139317827	rs66883945	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	6q24.1	intergenic	rs66883945-G	0.808	2E-12		0.0172	[0.012-0.022] unit increase	Affymetrix [18391927] (imputed)	N
1647	chr6	139317827	139317827	rs66883945	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	6q24.1	ABRACL	rs66883945-?	NR	3E-10		0.0207	[0.015-0.027] unit increase	Affymetrix [5701386] (imputed)	N
1647	chr6	139317827	139317827	rs66883945	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	6q24.1	NR	rs66883945-GC	0.193585	8E-11		0.00688011	[0.0048-0.009] unit increase	Affymetrix [16582909] (imputed)	N
1647	chr6	139317827	139317827	rs66883945	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	6q24.1	NR	rs66883945-GC	0.193585	2E-10		0.00725026	[0.0049-0.0096] unit increase	Affymetrix [16582965] (imputed)	N
1647	chr6	139317827	139317827	rs66883945	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	6q24.1	intergenic	rs66883945-?	0.8191	4E-9		0.0214	[0.014-0.028] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1647	chr6	139324874	139324875	rs11961816	29703844	van Zuydam NR	2018-04-27	Diabetes	A Genome-Wide Association Study of Diabetic Kidney Disease in Subjects With Type 2 Diabetes.	Diabetic kidney disease in type 2 diabetes (ESRD vs. no ESRD)	371 European ancestry cases with end-stage renal disease, 4,471 European ancestry cases without end-stage renal disease	1,640 European ancestry cases with end-stage renal disease, 7,803 European ancestry cases without end-stage renal disease, 877 Asian cases with end-stage renal disease, 4,510 Asian cases without end-stage renal disease, 20 Chinese ancestry cases with end-stage renal disease, 398 Chinese ancestry cases without end-stage renal disease	6q24.1	NR	rs11961816-?		4E-6		1.72	[1.10-2.68]	Affymetrix, Illumina [up to 9343778] (imputed)	N
1647	chr6	139324874	139324875	rs11961816	29703844	van Zuydam NR	2018-04-27	Diabetes	A Genome-Wide Association Study of Diabetic Kidney Disease in Subjects With Type 2 Diabetes.	Diabetic kidney disease in type 2 diabetes (ESRD vs. no ESRD)	371 European ancestry cases with end-stage renal disease, 4,471 European ancestry cases without end-stage renal disease	1,640 European ancestry cases with end-stage renal disease, 7,803 European ancestry cases without end-stage renal disease, 877 Asian cases with end-stage renal disease, 4,510 Asian cases without end-stage renal disease, 20 Chinese ancestry cases with end-stage renal disease, 398 Chinese ancestry cases without end-stage renal disease	6q24.1	NR	rs11961816-?		2E-6	(EA)	1.81	[1.10-2.97]	Affymetrix, Illumina [up to 9343778] (imputed)	N
1648	chr6	139331130	139331131	rs62441842	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6q24.1		rs62441842-?	NR	3E-13				NR [~ 8900000] (imputed)	N
1648	chr6	139335594	139335595	rs62441844	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	6q24.1	NR	rs62441844-T	NR	3E-10		0.0185	[0.013-0.024] unit increase	Affymetrix [9000000] (imputed)	N
1648	chr6	139335594	139335595	rs62441844	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	6q24.1	NR	rs62441844-T	NR	1E-9		0.0187	[0.013-0.025] unit increase	Affymetrix [9000000] (imputed)	N
1648	chr6	139336949	139336950	rs62441846	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	6q24.1	MAP2	rs62441846-?		5E-8				NR [7428630] (imputed)	N
1649	chr6	139496781	139496782	rs13195460	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Coronary artery disease in diabetes	361 Korean ancestry cases, 4,951 Korean ancestry controls	NA	6q24.1		rs13195460-G	0.1268	8E-7		1.676	[1.3659999999999899-2.056]	Affymetrix [7975321] (imputed)	N
1650	chr6	139599208	139599209	rs11965233	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels	18,590 European ancestry individuals	NA	6q24.1		rs11965233-?	NR	3E-7		0.07	[0.045-0.095] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1650	chr6	139607724	139607725	rs34320498	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	6q24.1	TXLNB	rs34320498-C	0.838328	2E-12		0.0174145	[0.013-0.022] unit increase	NR [13737936] (imputed)	N
1650	chr6	139607821	139607822	rs36044402	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	6q24.1		rs36044402-?	NR	5E-13				NR [~ 8900000] (imputed)	N
1650	chr6	139616484	139616485	rs67059016	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	6q24.1	NR	rs67059016-C	NR	3E-9		0.0163	[0.011-0.022] unit increase	Affymetrix [9000000] (imputed)	N
1650	chr6	139616716	139616716	rs536371583	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6q24.1		rs536371583-?	NR	9E-13		0.019629	[0.014-0.025] unit increase	Affymetrix [20259828] (imputed)	N
1650	chr6	139619310	139619311	rs6933946	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	6q24.1	NR	rs6933946-T	NR	2E-12		0.0184	[0.013-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
1650	chr6	139629102	139629152	rs531519874	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	6q24.1		rs531519874-G	NR	3E-23		0.0221	[0.018-0.026] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
1650	chr6	139629102	139629152	rs531519874	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	133,321 East Asian ancestry individuals	NA	6q24.1		rs531519874-G	0.256233	1E-11		0.0308634	[0.022-0.04] unit increase	Illumina [13477433] (imputed)	N
1650	chr6	139635264	139635265	rs6935717	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Non-albumin protein levels	98,538 Japanese ancestry individuals	NA	6q24.1	TXLNB, CITED2	rs6935717-?	NR	2E-10		0.03821	[0.026-0.05] unit increase novel	Illumina [6108953] (imputed)	N
1650	chr6	139635264	139635265	rs6935717	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Albumin-globulin ratio	98,626 Japanese ancestry individuals	NA	6q24.1	TXLNB, CITED2	rs6935717-?	NR	8E-11		0.03899	[0.027-0.051] unit decrease novel	Illumina [6108953] (imputed)	N
1650	chr6	139660011	139660012	rs11155053	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6q24.1	CITED2	rs11155053-A	0.059	9E-6	(HRmax )	0.03	[NR] bpm increase	Illumina [899892]	N
1650	chr6	139665825	139665826	rs150065955	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	6q24.1		rs150065955-?	NR	5E-15				NR [~ 8900000] (imputed)	N
1650	chr6	139690744	139690745	rs7765503	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	6q24.1	CITED2	rs7765503-T	0.384016	2E-10		0.0130454	[0.0089-0.0171] unit increase	Affymetrix [93095623] (imputed)	N
1650	chr6	139694221	139694222	rs112007554	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6q24.1	CITED2	rs112007554-G	0.018821	2E-10		0.05416852	[0.037-0.071] unit decrease	Affymetrix [93095623] (imputed)	N
1650	chr6	139694221	139694222	rs112007554	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	6q24.1	CITED2	rs112007554-G	0.018806	4E-12		0.059901547	[0.043-0.077] unit decrease	Affymetrix [93095623] (imputed)	N
1651	chr6	139777829	139777830	rs184091137	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	6q24.1	Intergenic	rs184091137-T	1.0	1E-6	(AA)	0.705	unit increase	Illumina [NR] (imputed)	N
1651	chr6	139806746	139806747	rs7766444	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6q24.1	RP11-12A2.3	rs7766444-C	NR	4E-11		0.0198576	[0.014-0.026] unit increase	Affymetrix [319769] (imputed)	N
1651	chr6	139806746	139806747	rs7766444	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6q24.1	RP11-12A2.3	rs7766444-C	NR	8E-11		0.019544	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
1651	chr6	139806746	139806747	rs7766444	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6q24.1	RP11-12A2.3	rs7766444-C	NR	8E-9		0.0174959	[0.012-0.023] unit increase	Affymetrix [321114] (imputed)	N
1651	chr6	139806746	139806747	rs7766444	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6q24.1	RP11-12A2.3	rs7766444-C	NR	4E-8		0.0166886	[0.011-0.023] unit increase	Affymetrix [321169] (imputed)	N
1651	chr6	139806746	139806747	rs7766444	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6q24.1	NR	rs7766444-?	NR	8E-11				Affymetrix [~ 8270000] (imputed)	N
1651	chr6	139813631	139813632	rs9389689	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6q24.1	RP11-12A2.3	rs9389689-C	NR	4E-12		0.0196678	[0.014-0.025] unit increase	Affymetrix [321114] (imputed)	N
1651	chr6	139815877	139815878	rs9376421	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6q24.1	RP11-12A2.3	rs9376421-T	NR	2E-15		0.022324	[0.017-0.028] unit increase	Affymetrix [319769] (imputed)	N
1651	chr6	139815877	139815878	rs9376421	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6q24.1	RP11-12A2.3	rs9376421-T	NR	2E-15		0.0222717	[0.017-0.028] unit increase	Affymetrix [319769] (imputed)	N
1651	chr6	139815877	139815878	rs9376421	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6q24.1	RP11-12A2.3	rs9376421-T	NR	1E-11		0.0192842	[0.014-0.025] unit increase	Affymetrix [321169] (imputed)	N
1651	chr6	139823382	139823382	rs201346242	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6q24.1	RP11-12A2.3	rs201346242-TA	NR	2E-8		0.0209231	[0.014-0.028] unit decrease	Affymetrix [319769] (imputed)	N
1651	chr6	139823382	139823382	rs201346242	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6q24.1	RP11-12A2.3	rs201346242-TA	NR	2E-8		0.0207516	[0.013-0.028] unit decrease	Affymetrix [319769] (imputed)	N
1651	chr6	139824372	139824373	rs2908519	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6q24.1	RP11-12A2.3	rs2908519-T	NR	5E-8		0.0160649	[0.01-0.022] unit decrease	Affymetrix [319769] (imputed)	N
1651	chr6	139824372	139824373	rs2908519	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6q24.1	RP11-12A2.3	rs2908519-T	NR	4E-8		0.0161863	[0.01-0.022] unit decrease	Affymetrix [319769] (imputed)	N
1651	chr6	139824372	139824373	rs2908519	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6q24.1	RP11-12A2.3	rs2908519-T	NR	2E-8		0.0168092	[0.011-0.023] unit decrease	Affymetrix [321114] (imputed)	N
1651	chr6	139824905	139824906	rs71562508	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6q24.1	RP11-12A2.3	rs71562508-A	NR	1E-9		0.0337379	[0.023-0.045] unit increase	Affymetrix [319769] (imputed)	N
1651	chr6	139824905	139824906	rs71562508	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6q24.1	RP11-12A2.3	rs71562508-A	NR	1E-9		0.0337618	[0.023-0.045] unit increase	Affymetrix [319769] (imputed)	N
1651	chr6	139824905	139824906	rs71562508	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6q24.1	NR	rs71562508-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
1651	chr6	139825674	139825675	rs653690	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6q24.1	RP11-12A2.3	rs653690-A	NR	5E-8		0.0233877	[0.015-0.032] unit increase	Affymetrix [319769] (imputed)	N
1651	chr6	139825674	139825675	rs653690	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6q24.1	RP11-12A2.3	rs653690-A	NR	2E-8		0.0241971	[0.016-0.033] unit increase	Affymetrix [319769] (imputed)	N
1651	chr6	139825879	139825880	rs2430189	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6q24.1	RP11-12A2.3	rs2430189-C	NR	6E-19		0.0249598	[0.019-0.03] unit decrease	Affymetrix [319769] (imputed)	N
1651	chr6	139825879	139825880	rs2430189	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6q24.1	RP11-12A2.3	rs2430189-C	NR	5E-19		0.0250368	[0.02-0.031] unit decrease	Affymetrix [319769] (imputed)	N
1651	chr6	139825879	139825880	rs2430189	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6q24.1	RP11-12A2.3	rs2430189-C	NR	3E-15		0.0224208	[0.017-0.028] unit decrease	Affymetrix [321114] (imputed)	N
1651	chr6	139825879	139825880	rs2430189	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6q24.1	RP11-12A2.3	rs2430189-C	NR	3E-14		0.0215946	[0.016-0.027] unit decrease	Affymetrix [321169] (imputed)	N
1651	chr6	139827776	139827777	rs633417	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Smoking x traumatic event in childhood (felt hated by family member) interaction	124,481 European ancestry individuals	NA	6q24.1		rs633417-?	NR	8E-9		0.6549	[0.43-0.88] unit increase	Affymetrix [NR] (imputed)	N
1651	chr6	139827776	139827777	rs633417	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6q24.1	RP11-12A2.3	rs633417-C	NR	3E-8		0.017845	[0.012-0.024] unit decrease	Affymetrix [319769] (imputed)	N
1651	chr6	139827776	139827777	rs633417	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6q24.1	RP11-12A2.3	rs633417-C	NR	3E-8		0.0178261	[0.012-0.024] unit decrease	Affymetrix [319769] (imputed)	N
1651	chr6	139827776	139827777	rs633417	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6q24.1	NR	rs633417-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1651	chr6	139828313	139828314	rs686036	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	6q24.1		rs686036-T	0.9625338	2E-144		0.15463816	[0.14-0.17] unit decrease	Affymetrix [93095623] (imputed)	N
1651	chr6	139828313	139828314	rs686036	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q24.1	NR	rs686036-T	0.958489	1E-361				Affymetrix, Illumina [24246363] (imputed)	N
1651	chr6	139829665	139829666	rs605066	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	6q24.1		rs605066-T	0.5849	4E-14		0.11214567	[0.083-0.141] mmHg decrease	Affymetrix, Illumina [242866] (imputed)	N
1651	chr6	139829665	139829666	rs605066	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	HDL cholesterol levels	up to 23,761 African ancestry individuals, 13,171 Asian ancestry individuals, up to 90,272 European ancestry individuals, 6,620 Hispanic individuals	NA	6q24.1		rs605066-T	0.5881	4E-8	(EA)	0.0069	[0.0044-0.0094] unit increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1651	chr6	139829665	139829666	rs605066	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	6q24.1	NR	rs605066-T	0.5835	3E-40		0.0242	[0.021-0.028] unit decrease	NR [~ 27400000] (imputed)	N
1651	chr6	139829665	139829666	rs605066	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	6q24.1	NA	rs605066-T	0.5834	2E-26		0.0192	[0.016-0.023] unit decrease	NR [~ 27400000] (imputed)	N
1651	chr6	139829665	139829666	rs605066	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	6q24.1	NR	rs605066-T	0.5834	2E-26		0.0192	[0.016-0.023] unit decrease	NR [~ 27400000] (imputed)	N
1651	chr6	139829665	139829666	rs605066	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6q24.1	NR	rs605066-C	NR	1E-13		0.028	unit increase	Affymetrix [at least 7091467] (imputed)	N
1651	chr6	139829665	139829666	rs605066	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6q24.1	NR	rs605066-C	0.408	9E-13	(EA)	0.03	unit increase	Affymetrix [at least 7091467] (imputed)	N
1651	chr6	139829665	139829666	rs605066	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6q24.1	NR	rs605066-C	NR	3E-12		0.024	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1651	chr6	139829665	139829666	rs605066	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6q24.1	NR	rs605066-C	0.408	6E-12	(EA)	0.026	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1651	chr6	139829665	139829666	rs605066	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	6q24.1	CITED2	rs605066-C	0.42	3E-8		0.028	[NR] unit decrease	NR [NR] (imputed)	N
1651	chr6	139829665	139829666	rs605066	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	HDL cholesterol	99,900 European ancestry individuals	NA	6q24.1	CITED2	rs605066-C	0.42	3E-8		0.39	[0.23-0.55] mg/dL decrease	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1651	chr6	139829695	139829695	rs5880430	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	6q24.1		rs5880430-T,rs5880430-T	0.370464	1E-8		0.0243035	[0.016-0.033] unit decrease	NR [11722792] (imputed)	N
1651	chr6	139829695	139829695	rs5880430	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	6q24.1		rs5880430-T,rs5880430-T	0.370464	1E-8		0.0243035	[0.016-0.033] unit decrease	NR [11722792] (imputed)	N
1651	chr6	139830217	139830218	rs607342	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	8,181 South Asian ancestry individuals	NA	6q24.1	NR	rs607342-A	0.312804	5E-10		0.104658	[0.072-0.138] SD units increase	Affymetrix, Illumina [28486451] (imputed)	N
1651	chr6	139830217	139830218	rs607342	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	6q24.1		rs607342-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1651	chr6	139831179	139831180	rs679582	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6q24.1		rs679582-G	0.372309	4E-8		0.0221534	[0.014-0.03] unit increase	NR [11722792] (imputed)	N
1651	chr6	139831179	139831180	rs679582	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6q24.1		rs679582-G	0.372309	5E-9		0.0238169	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
1651	chr6	139831179	139831180	rs679582	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6q24.1		rs679582-G	0.372309	2E-9		0.024235	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
1651	chr6	139831179	139831180	rs679582	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6q24.1		rs679582-G	0.372309	1E-10		0.0258014	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
1651	chr6	139831179	139831180	rs679582	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6q24.1		rs679582-G	0.372309	2E-9		0.0241645	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
1651	chr6	139831179	139831180	rs679582	23720494	Evans DM	2013-05-29	Hum Mol Genet	Genome-wide association study identifies loci affecting blood copper, selenium and zinc.	Blood trace element (Se levels)	5477 European ancestry individuals	NA	6q24.1	CITED2	rs679582-?	NR	3E-6		0.095	[0.056-0.134] unit increase	Illumina [> 2500000] (imputed)	N
1651	chr6	139831756	139831757	rs634869	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	6q24.1		rs634869-C	0.590258	5E-20		0.020467283	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1651	chr6	139831756	139831757	rs634869	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6q24.1	NR	rs634869-?	NR	5E-38				Affymetrix [~ 8270000] (imputed)	N
1651	chr6	139831756	139831757	rs634869	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6q24.1	NR	rs634869-?	NR	6E-17				Affymetrix [~ 8270000] (imputed)	N
1651	chr6	139831756	139831757	rs634869	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	Triglyceride levels	up to 23,508 African ancestry individuals, 4,649 Asian ancestry individuals, up to 77,047 European ancestry individuals, 6,705 Hispanic individuals	NA	6q24.1		rs634869-T	0.4147	8E-7	(EA)	0.013	[0.0079-0.0181] unit increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1651	chr6	139831756	139831757	rs634869	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	HDL cholesterol levels	up to 23,761 African ancestry individuals, 13,171 Asian ancestry individuals, up to 90,272 European ancestry individuals, 6,620 Hispanic individuals	NA	6q24.1		rs634869-T	0.4116	4E-8	(EA)	0.007	[0.0045-0.0095] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1651	chr6	139831756	139831757	rs634869	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	6q24.1		rs634869-?	NR	2E-32				NR [~ 8900000] (imputed)	N
1651	chr6	139831756	139831757	rs634869	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	6q24.1	NR	rs634869-T	0.42	1E-37		0.023	[0.019-0.027] unit increase	Affymetrix [2446094] (imputed)	N
1651	chr6	139831756	139831757	rs634869	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	6q24.1	NR	rs634869-T	0.42	5E-8				Affymetrix [2446094] (imputed)	N
1651	chr6	139831756	139831757	rs634869	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	HDL cholesterol levels	34,930 East Asian ancestry individuals, 187,167 European ancestry individuals	8,741 Chinese ancestry individuals	6q24.1	CITED2	rs634869-T	0.438	5E-11	(Trans-ethnic initial)	0.0234	[0.017-0.03] unit decrease (EA Beta values)	Affymetrix, Illumina [~ 1900000] (imputed)	N
1651	chr6	139834011	139834012	rs632057	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	VLDL cholesterol levels	115,082 European ancestry individuals	NA	6q24.1		rs632057-T	0.372222	6E-10		0.0264162	[0.018-0.035] unit increase	NR [11722792] (imputed)	N
1651	chr6	139834011	139834012	rs632057	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6q24.1		rs632057-T	0.372222	2E-11		0.0277226	[0.02-0.036] unit increase	NR [11722792] (imputed)	N
1651	chr6	139834011	139834012	rs632057	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	6q24.1		rs632057-T	0.372222	7E-19		0.0358976	[0.028-0.044] unit increase	NR [11722792] (imputed)	N
1651	chr6	139834011	139834012	rs632057	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	6q24.1		rs632057-T	0.372222	4E-18		0.0353799	[0.027-0.043] unit increase	NR [11722792] (imputed)	N
1651	chr6	139834011	139834012	rs632057	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very small VLDL	115,082 European ancestry individuals	NA	6q24.1		rs632057-T	0.372222	6E-17		0.0347805	[0.027-0.043] unit increase	NR [11722792] (imputed)	N
1651	chr6	139834011	139834012	rs632057	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large VLDL	115,082 European ancestry individuals	NA	6q24.1		rs632057-T	0.372222	2E-17		0.034713	[0.027-0.043] unit increase	NR [11722792] (imputed)	N
1651	chr6	139834011	139834012	rs632057	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large HDL	115,082 European ancestry individuals	NA	6q24.1		rs632057-T	0.372222	2E-10		0.0265704	[0.018-0.035] unit increase	NR [11722792] (imputed)	N
1651	chr6	139834011	139834012	rs632057	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small VLDL	115,082 European ancestry individuals	NA	6q24.1		rs632057-T	0.372222	2E-19		0.037216	[0.029-0.045] unit increase	NR [11722792] (imputed)	N
1651	chr6	139834011	139834012	rs632057	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small LDL	115,082 European ancestry individuals	NA	6q24.1		rs632057-T	0.372222	4E-18		0.0359272	[0.028-0.044] unit increase	NR [11722792] (imputed)	N
1651	chr6	139834011	139834012	rs632057	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small HDL	115,082 European ancestry individuals	NA	6q24.1		rs632057-T	0.372222	8E-19		0.0364914	[0.028-0.045] unit increase	NR [11722792] (imputed)	N
1651	chr6	139834011	139834012	rs632057	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium LDL	115,082 European ancestry individuals	NA	6q24.1		rs632057-T	0.372222	2E-16		0.0343874	[0.026-0.043] unit increase	NR [11722792] (imputed)	N
1651	chr6	139834011	139834012	rs632057	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium HDL	115,082 European ancestry individuals	NA	6q24.1		rs632057-T	0.372222	2E-13		0.0307105	[0.023-0.039] unit increase	NR [11722792] (imputed)	N
1651	chr6	139834011	139834012	rs632057	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large VLDL	115,082 European ancestry individuals	NA	6q24.1		rs632057-T	0.372222	1E-16		0.0339673	[0.026-0.042] unit increase	NR [11722792] (imputed)	N
1651	chr6	139834011	139834012	rs632057	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large LDL	115,082 European ancestry individuals	NA	6q24.1		rs632057-T	0.372222	6E-14		0.0313886	[0.023-0.04] unit increase	NR [11722792] (imputed)	N
1651	chr6	139834011	139834012	rs632057	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6q24.1		rs632057-T	0.372222	1E-12		0.0293162	[0.021-0.037] unit increase	NR [11722792] (imputed)	N
1651	chr6	139834011	139834012	rs632057	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in VLDL	115,082 European ancestry individuals	NA	6q24.1		rs632057-T	0.372222	2E-18		0.0358436	[0.028-0.044] unit increase	NR [11722792] (imputed)	N
1651	chr6	139834011	139834012	rs632057	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in LDL	115,082 European ancestry individuals	NA	6q24.1		rs632057-T	0.372222	2E-15		0.0332412	[0.025-0.041] unit increase	NR [11722792] (imputed)	N
1651	chr6	139834011	139834012	rs632057	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in IDL	115,082 European ancestry individuals	NA	6q24.1		rs632057-T	0.372222	5E-14		0.0313453	[0.023-0.04] unit increase	NR [11722792] (imputed)	N
1651	chr6	139834011	139834012	rs632057	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in HDL	115,082 European ancestry individuals	NA	6q24.1		rs632057-T	0.372222	2E-14		0.0319538	[0.024-0.04] unit increase	NR [11722792] (imputed)	N
1651	chr6	139834011	139834012	rs632057	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total triglycerides levels	115,082 European ancestry individuals	NA	6q24.1		rs632057-T	0.372222	8E-19		0.0364572	[0.028-0.045] unit increase	NR [11722792] (imputed)	N
1651	chr6	139834011	139834012	rs632057	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large VLDL	115,082 European ancestry individuals	NA	6q24.1		rs632057-T	0.372222	5E-18		0.0354873	[0.027-0.044] unit increase	NR [11722792] (imputed)	N
1651	chr6	139834011	139834012	rs632057	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large VLDL	115,082 European ancestry individuals	NA	6q24.1		rs632057-T	0.372222	2E-17		0.0350701	[0.027-0.043] unit increase	NR [11722792] (imputed)	N
1651	chr6	139834011	139834012	rs632057	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6q24.1		rs632057-T	0.372222	9E-15		0.0317655	[0.024-0.04] unit increase	NR [11722792] (imputed)	N
1651	chr6	139834011	139834012	rs632057	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in VLDL	115,082 European ancestry individuals	NA	6q24.1		rs632057-T	0.372222	5E-17		0.0349673	[0.027-0.043] unit increase	NR [11722792] (imputed)	N
1651	chr6	139834011	139834012	rs632057	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total fatty acid levels	115,006 European ancestry individuals	NA	6q24.1		rs632057-T	0.372228	3E-11		0.0280219	[0.02-0.036] unit increase	NR [11722792] (imputed)	N
1651	chr6	139834011	139834012	rs632057	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	6q24.1		rs632057-T	0.372228	1E-18		0.0348788	[0.027-0.043] unit increase	NR [11722792] (imputed)	N
1651	chr6	139834011	139834012	rs632057	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	6q24.1		rs632057-T	0.372228	1E-11		0.0277938	[0.02-0.036] unit decrease	NR [11722792] (imputed)	N
1651	chr6	139834011	139834012	rs632057	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to monounsaturated fatty acids	115,006 European ancestry individuals	NA	6q24.1		rs632057-T	0.372228	2E-12		0.0289383	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
1651	chr6	139834011	139834012	rs632057	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of monounsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	6q24.1		rs632057-T	0.372228	6E-12		0.0281093	[0.02-0.036] unit increase	NR [11722792] (imputed)	N
1651	chr6	139834011	139834012	rs632057	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	6q24.1		rs632057-T	0.372222	4E-12		0.0281177	[0.02-0.036] unit increase	NR [11722792] (imputed)	N
1651	chr6	139834011	139834012	rs632057	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	6q24.1		rs632057-T	0.372231	1E-10		0.026599	[0.018-0.035] unit increase	NR [11722792] (imputed)	N
1651	chr6	139834011	139834012	rs632057	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large VLDL	115,082 European ancestry individuals	NA	6q24.1		rs632057-T	0.372222	3E-18		0.035815	[0.028-0.044] unit increase	NR [11722792] (imputed)	N
1651	chr6	139834011	139834012	rs632057	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large VLDL	115,082 European ancestry individuals	NA	6q24.1		rs632057-T	0.372222	4E-18		0.035737	[0.028-0.044] unit increase	NR [11722792] (imputed)	N
1651	chr6	139834011	139834012	rs632057	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6q24.1		rs632057-T	0.372222	7E-17		0.0340741	[0.026-0.042] unit increase	NR [11722792] (imputed)	N
1651	chr6	139834011	139834012	rs632057	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in VLDL	115,082 European ancestry individuals	NA	6q24.1		rs632057-T	0.372222	2E-15		0.0334024	[0.025-0.042] unit increase	NR [11722792] (imputed)	N
1651	chr6	139834011	139834012	rs632057	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Monounsaturated fatty acid levels	115,006 European ancestry individuals	NA	6q24.1		rs632057-T	0.372228	8E-14		0.0313916	[0.023-0.04] unit increase	NR [11722792] (imputed)	N
1651	chr6	139834011	139834012	rs632057	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6q24.1		rs632057-T	0.372222	5E-13		0.029756	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
1651	chr6	139834011	139834012	rs632057	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	6q24.1		rs632057-T	0.372222	2E-16		0.0335237	[0.026-0.041] unit decrease	NR [11722792] (imputed)	N
1651	chr6	139834011	139834012	rs632057	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	6q24.1		rs632057-T	0.372222	1E-16		0.0335016	[0.026-0.041] unit decrease	NR [11722792] (imputed)	N
1651	chr6	139834011	139834012	rs632057	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	6q24.1		rs632057-T	0.372222	9E-18		0.0354259	[0.027-0.044] unit increase	NR [11722792] (imputed)	N
1651	chr6	139834011	139834012	rs632057	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	6q24.1		rs632057-T	0.372222	5E-18		0.0356225	[0.028-0.044] unit increase	NR [11722792] (imputed)	N
1651	chr6	139834011	139834012	rs632057	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6q24.1		rs632057-T	0.372222	3E-16		0.0335938	[0.026-0.042] unit increase	NR [11722792] (imputed)	N
1651	chr6	139834011	139834012	rs632057	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in VLDL	115,082 European ancestry individuals	NA	6q24.1		rs632057-T	0.372222	2E-13		0.0310194	[0.023-0.039] unit increase	NR [11722792] (imputed)	N
1651	chr6	139834011	139834012	rs632057	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large VLDL particles	115,082 European ancestry individuals	NA	6q24.1		rs632057-T	0.372222	1E-18		0.0360714	[0.028-0.044] unit increase	NR [11722792] (imputed)	N
1651	chr6	139834011	139834012	rs632057	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large VLDL particles	115,082 European ancestry individuals	NA	6q24.1		rs632057-T	0.372222	3E-18		0.0359043	[0.028-0.044] unit increase	NR [11722792] (imputed)	N
1651	chr6	139834011	139834012	rs632057	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of chylomicrons and extremely large VLDL particles	115,082 European ancestry individuals	NA	6q24.1		rs632057-T	0.372222	3E-16		0.0333973	[0.025-0.041] unit increase	NR [11722792] (imputed)	N
1651	chr6	139834011	139834012	rs632057	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of VLDL particles	115,082 European ancestry individuals	NA	6q24.1		rs632057-T	0.372222	4E-13		0.0306761	[0.022-0.039] unit increase	NR [11722792] (imputed)	N
1651	chr6	139834011	139834012	rs632057	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	6q24.1		rs632057-T	0.372433	6E-10		0.0252724	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
1651	chr6	139834011	139834012	rs632057	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	6q24.1		rs632057-T	0.372222	9E-9		0.0240306	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
1651	chr6	139834011	139834012	rs632057	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	6q24.1		rs632057-T	0.372222	2E-17		0.0350502	[0.027-0.043] unit decrease	NR [11722792] (imputed)	N
1651	chr6	139834011	139834012	rs632057	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large VLDL	115,082 European ancestry individuals	NA	6q24.1		rs632057-T	0.372222	1E-13		0.03104	[0.023-0.039] unit increase	NR [11722792] (imputed)	N
1651	chr6	139834011	139834012	rs632057	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6q24.1		rs632057-T	0.372222	6E-16		0.033329	[0.025-0.041] unit increase	NR [11722792] (imputed)	N
1651	chr6	139834011	139834012	rs632057	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6q24.1		rs632057-T	0.372222	3E-10		0.0254035	[0.018-0.033] unit decrease	NR [11722792] (imputed)	N
1651	chr6	139834011	139834012	rs632057	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	6q24.1		rs632057-T	0.372222	6E-9		0.02438	[0.016-0.033] unit decrease	NR [11722792] (imputed)	N
1651	chr6	139834011	139834012	rs632057	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	6q24.1		rs632057-T	0.372222	7E-17		0.0338608	[0.026-0.042] unit decrease	NR [11722792] (imputed)	N
1651	chr6	139834011	139834012	rs632057	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	6q24.1		rs632057-T	0.372222	2E-8		0.02321	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
1651	chr6	139834011	139834012	rs632057	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	6q24.1		rs632057-T	0.372222	4E-16		0.0338543	[0.026-0.042] unit increase	NR [11722792] (imputed)	N
1651	chr6	139834011	139834012	rs632057	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6q24.1		rs632057-T	0.372222	2E-16		0.0338611	[0.026-0.042] unit increase	NR [11722792] (imputed)	N
1651	chr6	139834011	139834012	rs632057	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	6q24.1		rs632057-G	NR	2E-38		0.0276	[0.023-0.032] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
1651	chr6	139834011	139834012	rs632057	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6q24.1	RP11-12A2.3	rs632057-T	NR	3E-44		0.0405622	[0.035-0.046] unit increase	Affymetrix [319769] (imputed)	N
1651	chr6	139834011	139834012	rs632057	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6q24.1	RP11-12A2.3	rs632057-T	NR	1E-44		0.0408147	[0.035-0.047] unit increase	Affymetrix [319769] (imputed)	N
1651	chr6	139834011	139834012	rs632057	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	6q24.1	RP11-12A2.3	rs632057-T	NR	7E-11		0.0197672	[0.014-0.026] unit decrease	Affymetrix [321788] (imputed)	N
1651	chr6	139834011	139834012	rs632057	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	6q24.1	NR	rs632057-G	NR	1E-34		0.0303	[0.025-0.035] unit decrease	Affymetrix [9000000] (imputed)	N
1651	chr6	139834011	139834012	rs632057	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	6q24.1	NR	rs632057-G	NR	1E-9		0.0149	[0.01-0.0198] unit decrease	Affymetrix [9000000] (imputed)	N
1651	chr6	139834011	139834012	rs632057	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	6q24.1	NR	rs632057-G	NR	2E-18		0.0226	[0.018-0.028] unit increase	Affymetrix [9000000] (imputed)	N
1651	chr6	139834011	139834012	rs632057	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	6q24.1	NR	rs632057-G	NR	3E-15		0.0199	[0.015-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
1651	chr6	139834011	139834012	rs632057	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	6q24.1	NR	rs632057-G	NR	7E-14		0.0185	[0.014-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
1651	chr6	139834011	139834012	rs632057	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	6q24.1	NR	rs632057-G	NR	2E-10		0.0164	[0.011-0.021] unit increase	Affymetrix [9000000] (imputed)	N
1651	chr6	139834011	139834012	rs632057	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6q24.1	intergenic	rs632057-G		2E-10		0.01	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
1651	chr6	139834011	139834012	rs632057	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	6q24.1	CITED2	rs632057-T	0.372279	2E-23		0.0196758	[0.016-0.024] unit decrease	Affymetrix [NR] (imputed)	N
1651	chr6	139834011	139834012	rs632057	31589552	Lind L	2019-10-07	Metab Syndr Relat Disord	Genome-Wide Association Study of the Metabolic Syndrome in UK Biobank.	Metabolic syndrome	291,107 European ancestry individuals	NA	6q24.1	LINC01625	rs632057-T	0.372799	5E-13		0.0486791	[0.035-0.062] unit decrease	Affymetrix [9463307] (imputed)	N
1651	chr6	139834011	139834012	rs632057	20139978	Kamatani Y	2010-02-07	Nat Genet	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Mean corpuscular volume	14,364 Japanese ancestry individuals	NA	6q24.1	CITED2	rs632057-G	0.25	1E-9		0.082	[0.057-0.107] unit decrease	Illumina [561583]	N
1651	chr6	139834011	139834012	rs632057	20139978	Kamatani Y	2010-02-07	Nat Genet	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Mean corpuscular hemoglobin	Up to 14,362 Japanese ancestry individuals	NA	6q24.1	CITED2	rs632057-G	0.25	1E-9		0.081	[0.056-0.106] unit decrease	Illumina [561583]	N
1651	chr6	139834348	139834349	rs111318529	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	6q24.1		rs111318529-G	0.037225	1E-13		0.04472912	[0.033-0.057] unit increase	Affymetrix [93095623] (imputed)	N
1651	chr6	139834348	139834349	rs111318529	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6q24.1		rs111318529-G	0.037223	4E-11		0.039821044	[0.028-0.052] unit increase	Affymetrix [93095623] (imputed)	N
1651	chr6	139834354	139834354	rs757501676	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium VLDL	115,082 European ancestry individuals	NA	6q24.1		rs757501676-AG	0.408783	2E-17		0.0345683	[0.027-0.043] unit increase	NR [11722792] (imputed)	N
1651	chr6	139834354	139834354	rs757501676	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small VLDL	115,082 European ancestry individuals	NA	6q24.1		rs757501676-AG	0.408783	4E-15		0.0324804	[0.024-0.041] unit increase	NR [11722792] (imputed)	N
1651	chr6	139834354	139834354	rs757501676	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium VLDL	115,082 European ancestry individuals	NA	6q24.1		rs757501676-AG	0.408783	2E-12		0.0291862	[0.021-0.037] unit increase	NR [11722792] (imputed)	N
1651	chr6	139834354	139834354	rs757501676	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small VLDL	115,082 European ancestry individuals	NA	6q24.1		rs757501676-AG	0.408783	4E-10		0.0260919	[0.018-0.034] unit increase	NR [11722792] (imputed)	N
1651	chr6	139834354	139834354	rs757501676	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium VLDL	115,082 European ancestry individuals	NA	6q24.1		rs757501676-AG	0.408783	6E-9		0.0244026	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
1651	chr6	139834354	139834354	rs757501676	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small VLDL particles	115,082 European ancestry individuals	NA	6q24.1		rs757501676-AG	0.408783	7E-16		0.0333305	[0.025-0.041] unit increase	NR [11722792] (imputed)	N
1651	chr6	139834354	139834354	rs757501676	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium VLDL particles	115,082 European ancestry individuals	NA	6q24.1		rs757501676-AG	0.408783	2E-9		0.0252737	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
1651	chr6	139834354	139834354	rs757501676	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large VLDL	115,082 European ancestry individuals	NA	6q24.1		rs757501676-AG	0.408783	1E-13		0.0307877	[0.023-0.039] unit increase	NR [11722792] (imputed)	N
1651	chr6	139834354	139834354	rs757501676	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	6q24.1		rs757501676-AG	0.408783	4E-16		0.0334066	[0.025-0.041] unit increase	NR [11722792] (imputed)	N
1651	chr6	139834868	139834869	rs654689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small VLDL	115,082 European ancestry individuals	NA	6q24.1		rs654689-G	0.409394	3E-9		0.0248323	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
1651	chr6	139834868	139834869	rs654689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	6q24.1		rs654689-G	0.409394	3E-8		0.0231333	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
1651	chr6	139835135	139835136	rs6908928	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	6q24.1		rs6908928-C	0.9628964	1E-10		0.0377626	[0.026-0.049] unit increase	Affymetrix [93095623] (imputed)	N
1651	chr6	139835328	139835329	rs2982521	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls, 33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	6q24.1		rs2982521-T	NR	2E-8		0.0325	[0.021-0.044] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1651	chr6	139835328	139835329	rs2982521	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	6q24.1	CITED2	rs2982521-A	0.371648	7E-14		0.0151936	[0.011-0.019] unit decrease	Affymetrix [NR] (imputed)	N
1651	chr6	139835328	139835329	rs2982521	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls	NA	6q24.1	RP11-12A2.3	rs2982521-A	0.372013	2E-8		0.032467972	[0.021-0.044] unit increase	Affymetrix [7288503] (imputed)	N
1651	chr6	139835328	139835329	rs2982521	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes (adjusted for BMI)	50,409 European ancestry cases, 523,897 European ancestry controls	NA	6q24.1	MIR3668	rs2982521-A	0.38	1E-9		1.05	[1.03-1.06]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1651	chr6	139835398	139835399	rs2908522	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	6q24.1	NR	rs2908522-G	0.58455	7E-12		0.00551459	[0.0038-0.0072] unit increase	Affymetrix [16582909] (imputed)	N
1651	chr6	139835398	139835399	rs2908522	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	6q24.1	NR	rs2908522-G	0.58455	8E-9		0.00518367	[0.0033-0.007] unit increase	Affymetrix [16582965] (imputed)	N
1651	chr6	139835398	139835399	rs2908522	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	6q24.1	LINC01625, LOC100132735	rs2908522-G	NR	3E-18	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1651	chr6	139835398	139835399	rs2908522	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	6q24.1	LINC01625, LOC100132735	rs2908522-G	NR	2E-26				Affymetrix, Illumina [NR] (imputed)	N
1651	chr6	139835398	139835399	rs2908522	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	6q24.1	LINC01625, LOC100132735	rs2908522-G	NR	6E-25				Affymetrix, Illumina [NR] (imputed)	N
1651	chr6	139835398	139835399	rs2908522	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	6q24.1	LINC01625, LOC100132735	rs2908522-G	NR	3E-17	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1651	chr6	139835398	139835399	rs2908522	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	6q24.1	LINC01625, LOC100132735	rs2908522-G	NR	2E-8	(EA)	0.014	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1651	chr6	139835398	139835399	rs2908522	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	6q24.1	LINC01625, LOC100132735	rs2908522-G	NR	1E-11		0.012	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1651	chr6	139835398	139835399	rs2908522	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	6q24.1	LINC01625, LOC100132735	rs2908522-G	NR	9E-6	(EA)	0.016	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1651	chr6	139835398	139835399	rs2908522	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	6q24.1	LINC01625, LOC100132735	rs2908522-G	NR	3E-7		0.011	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1651	chr6	139835398	139835399	rs2908522	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	6q24.1	LINC01625, LOC100132735	rs2908522-G	NR	4E-16				Affymetrix, Illumina [NR] (imputed)	N
1651	chr6	139835398	139835399	rs2908522	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	6q24.1	LINC01625, LOC100132735	rs2908522-G	NR	4E-15	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1651	chr6	139835398	139835399	rs2908522	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	6q24.1	LINC01625, LOC100132735	rs2908522-G	NR	4E-15	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1651	chr6	139835398	139835399	rs2908522	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	6q24.1	LINC01625, LOC100132735	rs2908522-G	NR	2E-15				Affymetrix, Illumina [NR] (imputed)	N
1651	chr6	139835398	139835399	rs2908522	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	6q24.1	LINC01625, LOC100132735	rs2908522-G	NR	5E-9	(EA)	0.007	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1651	chr6	139835398	139835399	rs2908522	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	6q24.1	LINC01625, LOC100132735	rs2908522-G	NR	3E-10		0.006	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1651	chr6	139835398	139835399	rs2908522	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	6q24.1	LINC01625, LOC100132735	rs2908522-G	NR	2E-7		0.005286	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1651	chr6	139835398	139835399	rs2908522	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	6q24.1	LINC01625, LOC100132735	rs2908522-G	NR	1E-6	(EA)	0.007945	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1651	chr6	139835398	139835399	rs2908522	30670697	Kilpelainen TO	2019-01-22	Nat Commun	Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity.	Triglycerides x physical activity interaction (2df test)	7,294 African American inactive individuals, 12,832 African American active individuals, 1,352 Asian ancestry inactive individuals, 3,049 Asian ancestry active individuals, 20,622 European ancestry inactive individuals, 51,480 European ancestry active individuals, 2,166 Hispanic or Latin American inactive individuals, 3,486 Hispanic or Latin American active individuals	580 African American inactive individuals, 1,540 African American active individuals, 1,217 South African Black ancestry inactive individuals, 389 South African Black ancestry active individuals, 765 East Asian ancestry inactive individuals, 1,814 East Asian ancestry active individuals,  724 South Asian ancestry inactive individuals, 1,424 South Asian ancestry active individuals, 32,456 European ancestry inactive individuals, 49,510 European ancestry active individuals, 2,619 Hispanic inactive individuals, 8,803 Hispanic active individuals	6q24.1	NR	rs2908522-C	0.4774	4E-14				Affymetrix, Illumina [at least 2500000] (imputed)	N
1651	chr6	139835417	139835418	rs199607859	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	6q24.1		rs199607859-G	0.405472	4E-15		0.0317367	[0.024-0.04] unit decrease	NR [11722792] (imputed)	N
1651	chr6	139835417	139835418	rs199607859	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of linoleic acid to total fatty acids	115,006 European ancestry individuals	NA	6q24.1		rs199607859-G	0.405472	5E-10		0.0253238	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
1651	chr6	139835417	139835418	rs199607859	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	6q24.1		rs199607859-T	NR	2E-18		0.0206	[0.016-0.025] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
1651	chr6	139835417	139835418	rs199607859	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	6q24.1	NR	rs199607859-T	0.593993	4E-17		0.010367	[0.0079-0.0128] unit increase	Affymetrix [16585854] (imputed)	N
1651	chr6	139835417	139835418	rs199607859	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	6q24.1	NR	rs199607859-T	0.593993	7E-12		0.0101126	[0.0073-0.013] unit increase	Affymetrix [16585866] (imputed)	N
1651	chr6	139835417	139835418	rs199607859	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	6q24.1	intergenic	rs199607859-T	0.548	7E-14		0.0203	[0.015-0.026] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1651	chr6	139835422	139835423	rs71562509	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	6q24.1		rs71562509-G	0.406663	4E-8		0.0208773	[0.013-0.028] unit decrease	NR [11722792] (imputed)	N
1651	chr6	139835422	139835423	rs71562509	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	6q24.1		rs71562509-T	NR	3E-9		0.0136	[0.0091-0.0181] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
1651	chr6	139835422	139835423	rs71562509	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6q24.1	RP11-12A2.3	rs71562509-G	NR	1E-33		0.0349351	[0.029-0.041] unit increase	Affymetrix [321114] (imputed)	N
1651	chr6	139835422	139835423	rs71562509	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	6q24.1	RP11-12A2.3	rs71562509-G	NR	3E-9		0.0193596	[0.013-0.026] unit decrease	Affymetrix [323858] (imputed)	N
1651	chr6	139835422	139835423	rs71562509	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6q24.1	RP11-12A2.3	rs71562509-G	NR	3E-33		0.0348124	[0.029-0.04] unit increase	Affymetrix [321169] (imputed)	N
1651	chr6	139835422	139835423	rs71562509	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	6q24.1	LINC01625	rs71562509-G	0.406577	9E-12		0.00267233	[0.0019-0.0034] unit increase	Affymetrix [13995440] (imputed)	N
1651	chr6	139835422	139835423	rs71562509	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	6q24.1	CITED2	rs71562509-G	0.406487	7E-9		0.0122527	[0.0081-0.0164] unit increase	Affymetrix [NR] (imputed)	N
1651	chr6	139835497	139835498	rs17585887	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	6q24.1		rs17585887-T	0.409078	4E-10		0.0235835	[0.016-0.031] unit decrease	NR [11722792] (imputed)	N
1651	chr6	139835497	139835498	rs17585887	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	6q24.1		rs17585887-T	0.409078	3E-11		0.0246369	[0.017-0.032] unit decrease	NR [11722792] (imputed)	N
1651	chr6	139835497	139835498	rs17585887	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	6q24.1		rs17585887-T	0.409078	8E-10		0.0233265	[0.016-0.031] unit decrease	NR [11722792] (imputed)	N
1651	chr6	139835497	139835498	rs17585887	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	6q24.1		rs17585887-T	0.409078	2E-10		0.0235611	[0.016-0.031] unit decrease	NR [11722792] (imputed)	N
1651	chr6	139835497	139835498	rs17585887	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for VLDL particles	115,082 European ancestry individuals	NA	6q24.1		rs17585887-T	0.409078	2E-16		0.0320758	[0.024-0.04] unit increase	NR [11722792] (imputed)	N
1651	chr6	139835497	139835498	rs17585887	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	6q24.1	NR	rs17585887-C	0.590213	1E-582		0.094156	[0.091-0.098] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1651	chr6	139835497	139835498	rs17585887	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6q24.1	NR	rs17585887-T	NR	2E-13		0.028	unit increase	Affymetrix [at least 7091467] (imputed)	N
1651	chr6	139835497	139835498	rs17585887	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6q24.1	NR	rs17585887-T	0.408	1E-12	(EA)	0.03	unit increase	Affymetrix [at least 7091467] (imputed)	N
1651	chr6	139835497	139835498	rs17585887	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6q24.1	NR	rs17585887-T	NR	2E-12		0.024	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1651	chr6	139835497	139835498	rs17585887	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6q24.1	NR	rs17585887-T	0.408	9E-12	(EA)	0.026	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1651	chr6	139835497	139835498	rs17585887	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	Triglycerides	up to 62,166 European ancestry individuals	NA	6q24.1	CITED2	rs17585887-T	0.44	7E-11		0.039	[0.027-0.051] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
1651	chr6	139835603	139835604	rs17585915	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	6q24.1	NR	rs17585915-G	0.590222	3E-19		0.016696	[0.013-0.02] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
1651	chr6	139835688	139835689	rs668459	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6q24.1		rs668459-C	0.409669	2E-10		0.0251187	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
1651	chr6	139835688	139835689	rs668459	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	6q24.1		rs668459-C	0.409696	2E-19		0.0355954	[0.028-0.043] unit increase	NR [11722792] (imputed)	N
1651	chr6	139835688	139835689	rs668459	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	6q24.1		rs668459-C	0.409669	2E-17		0.0334066	[0.026-0.041] unit increase	NR [11722792] (imputed)	N
1651	chr6	139835688	139835689	rs668459	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	6q24.1		rs668459-C	0.409669	6E-10		0.024901	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
1651	chr6	139835688	139835689	rs668459	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6q24.1		rs668459-C	0.409669	1E-10		0.0252321	[0.018-0.033] unit decrease	NR [11722792] (imputed)	N
1651	chr6	139835688	139835689	rs668459	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	6q24.1		rs668459-C	0.409669	3E-14		0.0303522	[0.023-0.038] unit decrease	NR [11722792] (imputed)	N
1651	chr6	139835688	139835689	rs668459	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	6q24.1		rs668459-C	0.409846	6E-9		0.0232414	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
1651	chr6	139835688	139835689	rs668459	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	6q24.1		rs668459-C	0.409669	4E-13		0.0285755	[0.021-0.036] unit decrease	NR [11722792] (imputed)	N
1651	chr6	139835688	139835689	rs668459	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	6q24.1		rs668459-T	0.58998	5E-15		0.017408285	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1651	chr6	139835688	139835689	rs668459	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	6q24.1	CITED2	rs668459-T	0.5858	1E-15		0.1219	[0.092-0.152] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1651	chr6	139835688	139835689	rs668459	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex x age interaction (4df test)	up to 43,776 European ancestry men aged <50, up to 50,526 European ancestry women aged <50, up to 69,944 European ancestry men aged >50, up to 88,129 European ancestry women aged >50	NA	6q24.1	ABRACL, HECA, TXLNB, LOC645434, LOC100132735	rs668459-T	0.574702916942344	6E-8				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1651	chr6	139835688	139835689	rs668459	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	6q24.1	ABRACL, HECA, TXLNB, LOC645434, LOC100132735	rs668459-T	0.574702916942344	6E-9		0.019618856	units decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1651	chr6	139835688	139835689	rs668459	23263863	Li J	2012-12-20	Hum Mol Genet	GWAS of blood cell traits identifies novel associated loci and epistatic interactions in Caucasian and African-American children.	Mean corpuscular volume	7,943 African American children, 6,234 European ancestry children	NA	6q24.1	CITED2	rs668459-T	NR	4E-8		0.3363	[0.22-0.46] unit decrease	Illumina [544917]	N
1651	chr6	139835688	139835689	rs668459	23263863	Li J	2012-12-20	Hum Mol Genet	GWAS of blood cell traits identifies novel associated loci and epistatic interactions in Caucasian and African-American children.	Mean corpuscular hemoglobin	7,943 African American children, 6,234 European ancestry children	NA	6q24.1	CITED2	rs668459-T	NR	9E-9		0.139	[0.092-0.186] unit decrease	Illumina [544917]	N
1651	chr6	139835688	139835689	rs668459	22479202	Dastani Z	2012-03-29	PLoS Genet	Novel loci for adiponectin levels and their influence on type 2 diabetes and metabolic traits: a multi-ethnic meta-analysis of 45,891 individuals.	Adiponectin levels	29,347 European ancestry individuals	10,536 European ancestry individuals	6q24.1	NR	rs668459-T	NR	3E-6		0.02	[NR] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1651	chr6	139835779	139835780	rs668887	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	6q24.1	intergenic	rs668887-A	0.9629	2E-117		0.2224597	[0.2-0.24] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1651	chr6	139835779	139835780	rs668887	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	6q24.1	intergenic	rs668887-A	0.9629	2E-91		0.195921	[0.18-0.21] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1651	chr6	139835779	139835780	rs668887	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	6q24.1	intergenic	rs668887-A	0.9629	1E-205		0.2923533	[0.27-0.31] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1651	chr6	139835779	139835780	rs668887	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	6q24.1	intergenic	rs668887-A	0.9629	1E-197		0.2892717	[0.27-0.31] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1651	chr6	139835779	139835780	rs668887	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	6q24.1	intergenic	rs668887-A	0.9629	1E-176		0.2733505	[0.25-0.29] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1651	chr6	139836271	139836272	rs72976928	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6q24.1	RP11-12A2.3	rs72976928-G	NR	4E-12		0.0244287	[0.018-0.031] unit decrease	Affymetrix [319769] (imputed)	N
1651	chr6	139836271	139836272	rs72976928	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6q24.1	RP11-12A2.3	rs72976928-G	NR	4E-12		0.0243753	[0.017-0.031] unit decrease	Affymetrix [319769] (imputed)	N
1651	chr6	139836271	139836272	rs72976928	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6q24.1	RP11-12A2.3	rs72976928-G	NR	2E-11		0.0238603	[0.017-0.031] unit decrease	Affymetrix [321114] (imputed)	N
1651	chr6	139836271	139836272	rs72976928	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6q24.1	RP11-12A2.3	rs72976928-G	NR	2E-8		0.0199209	[0.013-0.027] unit decrease	Affymetrix [321169] (imputed)	N
1651	chr6	139836271	139836272	rs72976928	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	6q24.1	NR	rs72976928-G	NR	1E-9		0.018	[0.012-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
1651	chr6	139836561	139836562	rs672457	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6q24.1	NR	rs672457-G	NR	2E-13		0.028	unit increase	Affymetrix [at least 7091467] (imputed)	N
1651	chr6	139836561	139836562	rs672457	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6q24.1	NR	rs672457-G	0.408	1E-12	(EA)	0.03	unit increase	Affymetrix [at least 7091467] (imputed)	N
1651	chr6	139836561	139836562	rs672457	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6q24.1	NR	rs672457-G	NR	2E-12		0.025	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1651	chr6	139836561	139836562	rs672457	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6q24.1	NR	rs672457-G	0.408	9E-12	(EA)	0.026	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1651	chr6	139837127	139837128	rs11155073	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q24.1	NR	rs11155073-C	0.522136	3E-404				Affymetrix, Illumina [20825802] (imputed)	N
1651	chr6	139837127	139837128	rs11155073	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	6q24.1	NR	rs11155073-C	0.579	4E-11		0.0304	[0.021-0.039] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
1651	chr6	139837127	139837128	rs11155073	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	6q24.1	NR	rs11155073-C	0.5159	1E-12		0.0275	[0.02-0.035] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1651	chr6	139837170	139837171	rs12205386	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6q24.1	RP11-12A2.3	rs12205386-A	NR	1E-15		0.0235698	[0.018-0.029] unit decrease	Affymetrix [319769] (imputed)	N
1651	chr6	139837170	139837171	rs12205386	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6q24.1	RP11-12A2.3	rs12205386-A	NR	9E-16		0.0236254	[0.018-0.029] unit decrease	Affymetrix [319769] (imputed)	N
1651	chr6	139837170	139837171	rs12205386	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6q24.1	RP11-12A2.3	rs12205386-A	NR	2E-10		0.0188023	[0.013-0.025] unit decrease	Affymetrix [321114] (imputed)	N
1651	chr6	139837170	139837171	rs12205386	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6q24.1	RP11-12A2.3	rs12205386-A	NR	8E-13		0.0212992	[0.015-0.027] unit decrease	Affymetrix [321169] (imputed)	N
1651	chr6	139837428	139837429	rs573454216	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Triglycerides	429,011 European ancestry individuals	NA	6q24.1		rs573454216-A	0.6	2E-44		0.028	mmol/L decrease	NR [NR] (imputed)	N
1651	chr6	139837428	139837429	rs573454216	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Sex hormone-binding globulin levels	389,354 European ancestry individuals	NA	6q24.1		rs573454216-A	0.6	4E-7		0.01	nmol/L increase	NR [NR] (imputed)	N
1651	chr6	139837428	139837429	rs573454216	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	6q24.1		rs573454216-A	0.6	6E-47				NR [NR] (imputed)	N
1651	chr6	139837428	139837429	rs573454216	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	High density lipoprotein cholesterol levels	392,965 European ancestry individuals	NA	6q24.1		rs573454216-A	0.6	4E-23		0.019	mmol/L increase	NR [NR] (imputed)	N
1651	chr6	139837428	139837429	rs573454216	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	6q24.1		rs573454216-A	0.6	1E-8		0.009	% increase	NR [NR] (imputed)	N
1651	chr6	139837428	139837429	rs573454216	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Alanine aminotransferase levels	429,203 European ancestry individuals	NA	6q24.1		rs573454216-A	0.6	1E-11		0.014	U/L decrease	NR [NR] (imputed)	N
1651	chr6	139837428	139837429	rs573454216	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	6q24.1	intergenic	rs573454216-A	0.5604	2E-21		0.0262	[0.021-0.032] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1651	chr6	139837430	139837431	rs540973884	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Saturated fatty acid levels	115,006 European ancestry individuals	NA	6q24.1		rs540973884-T	0.400655	1E-11		0.0284549	[0.02-0.037] unit increase	NR [11722792] (imputed)	N
1651	chr6	139837430	139837431	rs540973884	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	6q24.1		rs540973884-T	0.400644	2E-8		0.0239758	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
1651	chr6	139837430	139837431	rs540973884	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	6q24.1	CITED2	rs540973884-T	0.400548	3E-45		0.0289345	[0.025-0.033] unit increase	Affymetrix [NR] (imputed)	N
1651	chr6	139837430	139837431	rs540973884	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	6q24.1	ATP5F1P6	rs540973884-?	NR	2E-24		0.0276	[0.023-0.032] unit increase	Affymetrix [5701386] (imputed)	N
1651	chr6	139838418	139838419	rs628751	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	6q24.1		rs628751-A	0.22554	3E-39		0.0559716	[0.048-0.064] unit decrease	Illumina [13476266] (imputed)	N
1651	chr6	139838418	139838419	rs628751	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	6q24.1		rs628751-A	0.225418	2E-30		0.0495671	[0.041-0.058] unit decrease	Illumina [13476299] (imputed)	N
1651	chr6	139838418	139838419	rs628751	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	121,047 East Asian ancestry individuals	NA	6q24.1	NR	rs628751-C	0.771141	3E-33		0.058878	[0.049-0.068] SD units increase	Affymetrix, Illumina [16286195] (imputed)	N
1651	chr6	139838418	139838419	rs628751	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	119,629 East Asian ancestry individuals	NA	6q24.1	NR	rs628751-C	0.771135	1E-27		0.053808	[0.044-0.063] SD units increase	Affymetrix, Illumina [16286228] (imputed)	N
1651	chr6	139838418	139838419	rs628751	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	6q24.1		rs628751-?	NR	1E-300				NR [~ 8900000] (imputed)	N
1651	chr6	139838418	139838419	rs628751	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular volume	108,256 Japanese ancestry individuals	NA	6q24.1	LINC01625, LOC100132735	rs628751-?	NR	4E-34		0.06162	[0.052-0.072] unit decrease novel	Illumina [6108953] (imputed)	N
1651	chr6	139838418	139838419	rs628751	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin	108,054 Japanese ancestry individuals	NA	6q24.1	LINC01625, LOC100132735	rs628751-?	NR	3E-27		0.05478	[0.045-0.065] unit decrease novel	Illumina [6108953] (imputed)	N
1651	chr6	139838418	139838419	rs628751	19862010	Ganesh SK	2009-10-11	Nat Genet	Multiple loci influence erythrocyte phenotypes in the CHARGE Consortium.	Mean corpuscular hemoglobin	24,167 European ancestry individuals	9,456 European ancestry individuals	6q24.1	CITED2	rs628751-C	NR	1E-17		0.0	[0.003-0.005] pg decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1651	chr6	139839266	139839267	rs61286700	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	6q24.1		rs61286700-T	0.0744669999999999	4E-10		0.026396867	[0.018-0.035] unit increase	Affymetrix [93095623] (imputed)	N
1651	chr6	139839422	139839423	rs643381	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	6q24.1	NR	rs643381-A	0.520765	2E-449		0.08667	[0.083-0.09] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
1651	chr6	139839422	139839423	rs643381	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Red blood cell count	up to 40,258 European ancestry individuals, up to 16,128 African American individuals, up to 15,252 East Asian individuals.	16,389 individuals of European and African American ancestry.	6q24.1	NR	rs643381-?	NR	1E-8				NR [2500000] (imputed)	N
1651	chr6	139839422	139839423	rs643381	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular volume	up to 29,946 European ancestry individuals, up to 6150 African American individuals, 15,074 East Asian individuals.	16,389 individuals of European and African American ancestry.	6q24.1	NR	rs643381-?	NR	6E-29				NR [2500000] (imputed)	N
1651	chr6	139839422	139839423	rs643381	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular hemoglobin	up to 21,020 European ancestry individuals, up to 3,621 African American individuals, up to 15,062 East Asian individuals.	16,389 individuals of European and African American ancestry.	6q24.1	NR	rs643381-?	NR	1E-8				NR [2500000] (imputed)	N
1651	chr6	139839422	139839423	rs643381	19862010	Ganesh SK	2009-10-11	Nat Genet	Multiple loci influence erythrocyte phenotypes in the CHARGE Consortium.	Mean corpuscular volume	24,167 European ancestry individuals	9,456 European ancestry individuals	6q24.1	CITED2	rs643381-A	NR	5E-25		0.0	[0.003-0.005] fl decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1651	chr6	139839497	139839498	rs608736	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q24.1	NR	rs608736-C	0.456686	9E-19				Affymetrix, Illumina [24653286] (imputed)	N
1651	chr6	139839497	139839498	rs608736	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q24.1	NR	rs608736-C	0.458416	7E-23				Affymetrix, Illumina [24558453] (imputed)	N
1651	chr6	139839497	139839498	rs608736	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	6q24.1	NR	rs608736-C	0.520624	3E-24		0.018708	[0.015-0.022] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
1651	chr6	139839497	139839498	rs608736	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6q24.1	NR	rs608736-G	NR	2E-9		0.023	unit increase	Affymetrix [at least 7091467] (imputed)	N
1651	chr6	139839497	139839498	rs608736	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6q24.1	NR	rs608736-G	0.479	4E-9	(EA)	0.024	unit increase	Affymetrix [at least 7091467] (imputed)	N
1651	chr6	139839497	139839498	rs608736	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6q24.1	NR	rs608736-G	NR	1E-8		0.02	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1651	chr6	139839497	139839498	rs608736	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6q24.1	NR	rs608736-G	0.479	3E-8	(EA)	0.021	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1651	chr6	139839497	139839498	rs608736	27036123	van Leeuwen EM	2016-04-01	J Med Genet	Meta-analysis of 49 549 individuals imputed with the 1000 Genomes Project reveals an exonic damaging variant in ANGPTL4 determining fasting TG levels.	Triglycerides	41,142 European ancestry individuals, 705 East Asian ancestry individuals, 6,287 African American individuals, 1,415 Hispanic individuals	60,827 European ancestry individuals, 9,982 Indian Asian ancestry individuals, 2,710 African American/Afro-Caribbean individuals	6q24.1	NR	rs608736-C	0.48	9E-9		0.013	[0.0091-0.0169] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1651	chr6	139839768	139839768	rs151288714	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large HDL	115,082 European ancestry individuals	NA	6q24.1		rs151288714-A	0.48248	4E-8		0.0204226	[0.013-0.028] unit decrease	NR [11722792] (imputed)	N
1651	chr6	139839768	139839768	rs151288714	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large HDL	115,082 European ancestry individuals	NA	6q24.1		rs151288714-A	0.48248	4E-8		0.020463	[0.013-0.028] unit decrease	NR [11722792] (imputed)	N
1651	chr6	139839768	139839768	rs151288714	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	6q24.1		rs151288714-A	0.48248	3E-8		0.0214649	[0.014-0.029] unit decrease	NR [11722792] (imputed)	N
1651	chr6	139839768	139839768	rs151288714	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	6q24.1		rs151288714-?	NR	4E-10		0.00571141	[0.0039-0.0075] unit increase	NR [NR]	N
1651	chr6	139840692	139840693	rs592423	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	6q24.1		rs592423-C	NR	7E-72		0.0322	[0.029-0.036] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
1651	chr6	139840692	139840693	rs592423	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	6q24.1		rs592423-C	NR	7E-390		0.0877	[0.084-0.092] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
1651	chr6	139840692	139840693	rs592423	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	6q24.1		rs592423-C	NR	2E-290		0.0757	[0.072-0.08] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
1651	chr6	139840692	139840693	rs592423	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	6q24.1		rs592423-A	0.447	2E-327		0.42	[0.4-0.44] % increase	Affymetrix [NR] (imputed)	N
1651	chr6	139840692	139840693	rs592423	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	6q24.1	NR	rs592423-C	0.553385	9E-234		0.07482125	[0.07-0.079] unit decrease	Affymetrix [93095623] (imputed)	N
1651	chr6	139840692	139840693	rs592423	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6q24.1	NR	rs592423-C	0.553388	1E-178		0.06533037	[0.061-0.07] unit decrease	Affymetrix [93095623] (imputed)	N
1651	chr6	139840692	139840693	rs592423	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6q24.1		rs592423-C	0.553448	3E-387		0.09866043	[0.094-0.103] unit decrease	Affymetrix [93095623] (imputed)	N
1651	chr6	139840692	139840693	rs592423	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	6q24.1		rs592423-C	0.553245	2E-442		0.10447585	[0.1-0.109] unit decrease	Affymetrix [93095623] (imputed)	N
1651	chr6	139840692	139840693	rs592423	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	6q24.1		rs592423-C	0.553327	9E-406		0.106375	[0.1-0.11] unit decrease	Affymetrix [93095623] (imputed)	N
1651	chr6	139840692	139840693	rs592423	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	6q24.1		rs592423-C	0.553304	3E-289		0.081142046	[0.077-0.086] unit decrease	Affymetrix [93095623] (imputed)	N
1651	chr6	139840692	139840693	rs592423	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	6q24.1		rs592423-C	0.553392	2E-475		0.109329686	[0.1-0.11] unit decrease	Affymetrix [93095623] (imputed)	N
1651	chr6	139840692	139840693	rs592423	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	6q24.1		rs592423-C	0.55339	2E-395		0.09966439	[0.095-0.104] unit decrease	Affymetrix [93095623] (imputed)	N
1651	chr6	139840692	139840693	rs592423	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6q24.1		rs592423-C	0.553382	2E-348		0.093545705	[0.089-0.098] unit decrease	Affymetrix [93095623] (imputed)	N
1651	chr6	139840692	139840693	rs592423	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q24.1	NR	rs592423-C	0.485679	3E-131				Affymetrix, Illumina [24332387] (imputed)	N
1651	chr6	139840692	139840693	rs592423	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	8,188 South Asian ancestry individuals	NA	6q24.1	NR	rs592423-A	0.342636	4E-11		0.108534	[0.076-0.141] SD units increase	Affymetrix, Illumina [28492174] (imputed)	N
1651	chr6	139840692	139840693	rs592423	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6q24.1	intergenic	rs592423-A		1E-11		0.015	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
1651	chr6	139840692	139840693	rs592423	28898252	Wheeler E	2017-09-12	PLoS Med	Impact of common genetic determinants of Hemoglobin A1c on type 2 diabetes risk and diagnosis in ancestrally diverse populations: A transethnic genome-wide meta-analysis.	Glycated hemoglobin levels	88,355 European ancestry individuals	NA	6q24.1	CITED2	rs592423-A	0.4566	4E-8		0.0091	[0.0058-0.0124] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1651	chr6	139840692	139840693	rs592423	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular volume	up to 29,946 European ancestry individuals, up to 6150 African American individuals, 15,074 East Asian individuals.	16,389 individuals of European and African American ancestry.	6q24.1	CITED2	rs592423-A	NR	8E-9	(Asian)	0.0041	[0.0027-0.0055] unit increase	NR [2500000] (imputed)	N
1651	chr6	139840692	139840693	rs592423	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular hemoglobin	up to 21,020 European ancestry individuals, up to 3,621 African American individuals, up to 15,062 East Asian individuals.	16,389 individuals of European and African American ancestry.	6q24.1	CITED2	rs592423-A	NR	1E-10	(Asian)	0.0052	[0.0036-0.0068] unit increase	NR [2500000] (imputed)	N
1651	chr6	139840692	139840693	rs592423	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	6q24.1	intergenic	rs592423-C	0.5539	1E-154		0.09562379	[0.089-0.103] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1651	chr6	139840692	139840693	rs592423	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	6q24.1	intergenic	rs592423-C	0.5539	8E-118		0.08331155	[0.076-0.09] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1651	chr6	139840692	139840693	rs592423	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	6q24.1	intergenic	rs592423-C	0.5539	3E-39		0.04677355	[0.04-0.054] unit increase	Affymetrix [~ 2500000] (imputed)	N
1651	chr6	139840692	139840693	rs592423	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	6q24.1	intergenic	rs592423-C	0.5539	6E-205		0.1081019	[0.1-0.12] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1651	chr6	139840692	139840693	rs592423	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	6q24.1	intergenic	rs592423-C	0.5539	1E-149		0.09250341	[0.086-0.099] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1651	chr6	139840692	139840693	rs592423	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	6q24.1	intergenic	rs592423-C	0.554	1E-322		0.1371683	[0.13-0.14] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1651	chr6	139840692	139840693	rs592423	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	6q24.1	intergenic	rs592423-C	0.5539	5E-284		0.1297828	[0.12-0.14] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1651	chr6	139840692	139840693	rs592423	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	6q24.1	intergenic	rs592423-C	0.5539	1E-253		0.1225825	[0.12-0.13] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1651	chr6	139840692	139840693	rs592423	22479202	Dastani Z	2012-03-29	PLoS Genet	Novel loci for adiponectin levels and their influence on type 2 diabetes and metabolic traits: a multi-ethnic meta-analysis of 45,891 individuals.	Adiponectin levels	29,347 European ancestry individuals, 4,232 African American individuals, 1,776 Filipino ancestry individuals	NA	6q24.1	intergenic	rs592423-C	0.54	4E-7		0.02	[0.012-0.028] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1651	chr6	139841430	139841431	rs17068810	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6q24.1		rs17068810-A	0.107771	6E-18		0.031035867	[0.024-0.038] unit increase	Affymetrix [93095623] (imputed)	N
1651	chr6	139841430	139841431	rs17068810	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	6q24.1		rs17068810-A	0.107835	3E-20		0.033524852	[0.026-0.041] unit increase	Affymetrix [93095623] (imputed)	N
1651	chr6	139841430	139841431	rs17068810	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	6q24.1		rs17068810-A	0.107915	2E-12		0.0465156	[0.04-0.053] unit increase	Affymetrix [93095623] (imputed)	N
1651	chr6	139841430	139841431	rs17068810	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	6q24.1		rs17068810-A	0.107886	2E-9		0.02093263	[0.014-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1651	chr6	139841652	139841653	rs607203	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Red blood cell count	20,220 Amish, White ancestry individuals, 384 Asian ancestry individuals, 10,747 Black individuals, 13,119 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	6q24.1		rs607203-C	NR	2E-13		0.04	[0.02-0.06] unit increase	Illumina [92652022]	N
1651	chr6	139841652	139841653	rs607203	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular volume	22,267 Amish, White ancestry individuals, 447 Asian ancestry individuals, 12,285 Black individuals, 13,831 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	6q24.1		rs607203-C	NR	4E-29		0.74	[0.6-0.88] unit decrease	Illumina [97506867]	N
1651	chr6	139841652	139841653	rs607203	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular hemoglobin	20,714 Amish, White ancestry individuals, 447 Asian ancestry individuals, 11,246 Black individuals, 13,834 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	6q24.1		rs607203-C	NR	1E-22		0.26	[0.2-0.32] unit decrease	Illumina [94681438]	N
1651	chr6	139841652	139841653	rs607203	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	6q24.1	NR	rs607203-C	0.96184	2E-154		0.15894225	[0.15-0.17] unit decrease	Affymetrix [93095623] (imputed)	N
1651	chr6	139841652	139841653	rs607203	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6q24.1	NR	rs607203-C	0.9618449	4E-127		0.14409147	[0.13-0.16] unit decrease	Affymetrix [93095623] (imputed)	N
1651	chr6	139841652	139841653	rs607203	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6q24.1		rs607203-C	0.961822	2E-191		0.17560148	[0.16-0.19] unit decrease	Affymetrix [93095623] (imputed)	N
1651	chr6	139841652	139841653	rs607203	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	6q24.1		rs607203-C	0.9618078	1E-139		0.195211	[0.18-0.21] unit decrease	Affymetrix [93095623] (imputed)	N
1651	chr6	139841652	139841653	rs607203	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	6q24.1		rs607203-C	0.9618028	4E-88		0.11481169	[0.1-0.13] unit decrease	Affymetrix [93095623] (imputed)	N
1651	chr6	139841652	139841653	rs607203	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	6q24.1		rs607203-C	0.961833	5E-284		0.21822858	[0.21-0.23] unit decrease	Affymetrix [93095623] (imputed)	N
1651	chr6	139841652	139841653	rs607203	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	6q24.1		rs607203-C	0.9618147	1E-269		0.21032056	[0.2-0.22] unit decrease	Affymetrix [93095623] (imputed)	N
1651	chr6	139841652	139841653	rs607203	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6q24.1		rs607203-C	0.9618173	2E-242		0.19942638	[0.19-0.21] unit decrease	Affymetrix [93095623] (imputed)	N
1651	chr6	139841652	139841653	rs607203	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red blood cell traits (multivariate analysis)	29,513 European ancestry individuals	NA	6q24.1	NR	rs607203-?	0.96	3E-7				Affymetrix, Illumina [21000000] (imputed)	N
1651	chr6	139841652	139841653	rs607203	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red blood cell traits (multivariate analysis)	20,697 Hispanic or Latin American individuals	NA	6q24.1	NR	rs607203-?	0.93	6E-6				Affymetrix, Illumina [21000000] (imputed)	N
1651	chr6	139841652	139841653	rs607203	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red blood cell count	8,679 African American individuals, 17,412 Hispanic or Latin American individuals, 14,690 European ancestry individuals, 127 Asian ancestry individuals, 20 Native American ancestry individuals, 382 individuals	NA	6q24.1		rs607203-?	0.886	6E-7		0.0276	[0.017-0.038] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
1651	chr6	139841652	139841653	rs607203	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular volume	8,556 African American individuals, 17,141 Hispanic or Latin American individuals, 14,483 European ancestry individuals, 125 Asian ancestry individuals, 594 Native American ancestry individuals, 377 individuals	NA	6q24.1		rs607203-?	0.886	3E-23		0.7377	[0.59-0.88] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
1651	chr6	139841652	139841653	rs607203	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular volume	8,556 African American individuals	NA	6q24.1		rs607203-?	0.79	9E-7		0.6028	[0.36-0.84] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
1651	chr6	139841652	139841653	rs607203	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular volume	17,141 Hispanic or Latin American individuals	NA	6q24.1		rs607203-?	0.933	2E-13		0.9657	[0.71-1.22] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
1651	chr6	139841652	139841653	rs607203	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular volume	14,483 European ancestry individuals	NA	6q24.1		rs607203-?	0.96	4E-8		0.6945	[0.45-0.94] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
1651	chr6	139841652	139841653	rs607203	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin	8,694 African American individuals, 17,400 Hispanic or Latin American individuals, 14,693 European ancestry individuals, 127 Asian ancestry individuals, 20 Native American ancestry individuals, 382 individuals	NA	6q24.1		rs607203-?	0.886	2E-17		0.241	[0.19-0.3] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
1651	chr6	139841652	139841653	rs607203	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin	8,694 African American individuals	NA	6q24.1		rs607203-?	0.79	8E-6		0.2085	[0.12-0.3] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
1651	chr6	139841652	139841653	rs607203	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin	17,400 Hispanic or Latin American individuals	NA	6q24.1		rs607203-?	0.933	4E-10		0.3034	[0.21-0.4] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
1651	chr6	139841652	139841653	rs607203	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin	14,693 European ancestry individuals	NA	6q24.1		rs607203-?	0.96	5E-6		0.226	[0.13-0.32] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
1651	chr6	139841652	139841653	rs607203	28453575	Hodonsky CJ	2017-04-28	PLoS Genet	Genome-wide association study of red blood cell traits in Hispanics/Latinos: The Hispanic Community Health Study/Study of Latinos.	Mean corpuscular volume	12,502 Hispanic/Latino individuals	4,772 Hispanic/Latino individuals	6q24.1	CITED2	rs607203-T	0.07	2E-10		0.94	[0.65-1.23] fL increase	Illumina [27801688] (imputed)	N
1651	chr6	139841652	139841653	rs607203	28453575	Hodonsky CJ	2017-04-28	PLoS Genet	Genome-wide association study of red blood cell traits in Hispanics/Latinos: The Hispanic Community Health Study/Study of Latinos.	Mean corpuscular hemoglobin	12,502 Hispanic/Latino individuals	4,772 Hispanic/Latino individuals	6q24.1	CITED2	rs607203-T	0.07	2E-9		0.33	[0.21-0.45] pg increase	Illumina [27801688] (imputed)	N
1651	chr6	139842126	139842127	rs3890984	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	6q24.1		rs3890984-T	0.107809	7E-19		0.032593116	[0.025-0.04] unit increase	Affymetrix [93095623] (imputed)	N
1651	chr6	139842126	139842127	rs3890984	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	6q24.1	intergenic	rs3890984-T	0.1074	8E-24		0.05810351	[0.047-0.069] unit increase	Affymetrix [~ 2500000] (imputed)	N
1651	chr6	139842576	139842576	rs4052908	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	6q24.1		rs4052908-AATT	NR	1E-18		0.0193	[0.015-0.024] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
1651	chr6	139843191	139843192	rs666350	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	6q24.1		rs666350-T	0.9626726	1E-23		0.059971385	[0.048-0.072] unit increase	Affymetrix [93095623] (imputed)	N
1651	chr6	139843349	139843350	rs635243	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	6q24.1		rs635243-C	NR	9E-14		0.0129	[0.0096-0.0162] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
1651	chr6	139843582	139843583	rs636202	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	6q24.1		rs636202-C	NR	1E-11		0.0112	[0.0081-0.0143] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
1651	chr6	139843582	139843583	rs636202	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	6q24.1	CITED2, NMBR	rs636202-T	0.48	8E-9		5.78	z-score increase	Affymetrix [4312306] (imputed)	N
1651	chr6	139844428	139844429	rs590856	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	6q24.1		rs590856-A	0.552742	4E-70		0.039695214	[0.035-0.044] unit increase	Affymetrix [93095623] (imputed)	N
1651	chr6	139844428	139844429	rs590856	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	6q24.1	NR	rs590856-A	0.553318	7E-126		0.044275	[0.041-0.048] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
1651	chr6	139844428	139844429	rs590856	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red blood cell traits (multivariate analysis)	29,513 European ancestry individuals	NA	6q24.1	NR	rs590856-?	0.45	5E-7				Affymetrix, Illumina [21000000] (imputed)	N
1651	chr6	139844428	139844429	rs590856	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red blood cell traits (multivariate analysis)	20,697 Hispanic or Latin American individuals	NA	6q24.1	NR	rs590856-?	0.41	1E-11				Affymetrix, Illumina [21000000] (imputed)	N
1651	chr6	139844428	139844429	rs590856	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red blood cell count	8,679 African American individuals, 17,412 Hispanic or Latin American individuals, 14,690 European ancestry individuals, 127 Asian ancestry individuals, 20 Native American ancestry individuals, 382 individuals	NA	6q24.1		rs590856-?	0.4798	2E-8		0.0163	[0.011-0.022] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
1651	chr6	139844428	139844429	rs590856	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red blood cell count	14,690 European ancestry individuals	NA	6q24.1		rs590856-?	0.4494	8E-6		0.0188	[0.011-0.027] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
1651	chr6	139844428	139844429	rs590856	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular volume	8,556 African American individuals, 17,141 Hispanic or Latin American individuals, 14,483 European ancestry individuals, 125 Asian ancestry individuals, 594 Native American ancestry individuals, 377 individuals	NA	6q24.1		rs590856-?	0.4798	1E-23		0.3791	[0.3-0.45] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
1651	chr6	139844428	139844429	rs590856	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular volume	17,141 Hispanic or Latin American individuals	NA	6q24.1		rs590856-?	0.4126	2E-16		0.5344	[0.41-0.66] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
1651	chr6	139844428	139844429	rs590856	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular volume	14,483 European ancestry individuals	NA	6q24.1		rs590856-?	0.4494	5E-8		0.2761	[0.18-0.38] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
1651	chr6	139844428	139844429	rs590856	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin	8,694 African American individuals, 17,400 Hispanic or Latin American individuals, 14,693 European ancestry individuals, 127 Asian ancestry individuals, 20 Native American ancestry individuals, 382 individuals	NA	6q24.1		rs590856-?	0.4798	8E-16		0.1173	[0.089-0.146] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
1651	chr6	139844428	139844429	rs590856	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin	17,400 Hispanic or Latin American individuals	NA	6q24.1		rs590856-?	0.4126	6E-12		0.1649	[0.12-0.21] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
1651	chr6	139844428	139844429	rs590856	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	6q24.1		rs590856-?	NR	3E-97				NR [~ 8900000] (imputed)	N
1651	chr6	139844428	139844429	rs590856	23222517	van der Harst P	2012-12-05	Nature	Seventy-five genetic loci influencing the human red blood cell.	Red blood cell traits	62,553 European ancestry individuals, 9,308 South Asian ancestry individuals	63,506 European ancestry individuals	6q24.1	CITED2, LOC645434	rs590856-G	0.43	5E-36	(EA, MCV)	0.313	[0.26-0.36] unit increase	Affymetrix, Illumina, Perlegen [2711806] (imputed)	N
1651	chr6	139847292	139847293	rs61177759	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6q24.1	NR	rs61177759-?	NR	4E-10				Affymetrix [~ 8270000] (imputed)	N
1651	chr6	139847720	139847721	rs7759066	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6q24.1		rs7759066-?	NR	4E-11				NR [~ 8900000] (imputed)	N
1651	chr6	139850282	139850283	rs76771835	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6q24.1	RP11-12A2.3	rs76771835-T	NR	4E-11		0.0246975	[0.017-0.032] unit increase	Affymetrix [319769] (imputed)	N
1651	chr6	139850282	139850283	rs76771835	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6q24.1	RP11-12A2.3	rs76771835-T	NR	2E-11		0.0251976	[0.018-0.033] unit increase	Affymetrix [319769] (imputed)	N
1652	chr6	139857340	139857341	rs35304300	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	6q24.1	intergenic	rs35304300-G	0.1966	1E-10		0.02937207	[0.02-0.038] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1652	chr6	139857369	139857370	rs11753362	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q24.1	NR	rs11753362-G	0.810138	7E-27				Affymetrix, Illumina [17210439] (imputed)	N
1652	chr6	139858292	139858293	rs10484820	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	6q24.1	NR	rs10484820-A	0.805653	5E-28		0.026804	[0.022-0.032] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1652	chr6	139859917	139859918	rs6570351	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	6q24.1		rs6570351-?	NR	4E-11				NR [~ 8900000] (imputed)	N
1652	chr6	139860008	139860009	rs6570352	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6q24.1	RP11-12A2.3	rs6570352-C	NR	9E-9		0.0175393	[0.012-0.024] unit increase	Affymetrix [319769] (imputed)	N
1652	chr6	139860008	139860009	rs6570352	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6q24.1	RP11-12A2.3	rs6570352-C	NR	1E-8		0.0173253	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
1652	chr6	139886641	139886642	rs7740339	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	6q24.1		rs7740339-?	NR	1E-15				NR [~ 8900000] (imputed)	N
1652	chr6	139898857	139898858	rs9495528	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in lean individuals	up to 5,529 European ancestry male individuals, up to 9,753 European ancestry female individuals	NA	6q24.1	CITED2, LOC100132735	rs9495528-C	0.93	9E-6	(men)	0.171	[0.097-0.245] kg/m2 decrease	Affymetrix, Illumina [at least 188473] (imputed)	N
1652	chr6	139900705	139900706	rs7759910	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6q24.1	ATP5F1P6	rs7759910-A	NR	3E-8		0.0212756	[0.014-0.029] unit increase	Affymetrix [319769] (imputed)	N
1652	chr6	139901813	139901814	rs4896477	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q24.1	NR	rs4896477-T	0.580133	2E-10				Affymetrix, Illumina [19872809] (imputed)	N
1652	chr6	139901813	139901814	rs4896477	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	6q24.1	LOC645434	rs4896477-G	NR	8E-8		1.055409	NR	Affymetrix, Illumina [8278136] (imputed)	N
1652	chr6	139902435	139902436	rs7766497	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6q24.1		rs7766497-A	0.159927	7E-9		0.017660247	[0.012-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1652	chr6	139902435	139902436	rs7766497	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6q24.1	NR	rs7766497-?	NR	4E-9				Affymetrix [~ 8270000] (imputed)	N
1652	chr6	139911321	139911322	rs727098	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	6q24.1	LOC645434, LOC100132735	rs727098-G	0.25	7E-7		1.07	[1.04-1.10]	Illumina [161311]	N
1652	chr6	139916723	139916724	rs9495535	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	6q24.1		rs9495535-T	0.672157	1E-17		0.020018509	[0.015-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1652	chr6	139916723	139916724	rs9495535	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	6q24.1	NR	rs9495535-G	0.329291	2E-26		0.021355	[0.017-0.025] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
1652	chr6	139916723	139916724	rs9495535	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	6q24.1		rs9495535-?	NR	7E-17				NR [~ 8900000] (imputed)	N
1652	chr6	139926169	139926170	rs56181968	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6q24.1	NR	rs56181968-?	NR	8E-6		1.0563	[0.51-1.61] unit decrease	Illumina [at least 560000] (imputed)	N
1652	chr6	139951689	139951690	rs10223451	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	6q24.1	intergenic	rs10223451-G	0.6717	6E-10		0.02340406	[0.016-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
1652	chr6	139952639	139952640	rs4317424	29187748	Morey RA	2017-11-30	Transl Psychiatry	Genome-wide association study of subcortical brain volume in PTSD cases and trauma-exposed controls.	Caudate volume in trauma-exposed individuals	36 African American post-traumatic stress disorder cases, 38 African American trauma-exposed controls, 30 European ancestry post-traumatic stress disorder cases, 53 European ancestry trauma-exposed controls	NA	6q24.1	CITED2, TXLNB	rs4317424-C	NR	2E-7	(right hemisphere)	236.3	mm3 increase	Illumina [2711511] (imputed)	N
1652	chr6	139954254	139954255	rs9376438	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q24.1	NR	rs9376438-C	0.342729	1E-23				Affymetrix, Illumina [22063850] (imputed)	N
1652	chr6	139959341	139959342	rs75860909	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial triglycerides levels in chylomicrons and extremely large VLDL	4,348 individuals	NA	6q24.1		rs75860909-G	0.016123143	5E-8		0.485405	[0.31-0.66] mmol/l decrease	Illumina [7701709] (imputed)	N
1652	chr6	139959341	139959342	rs75860909	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total lipids in chylomicrons and extremely large VLDL	4,348 individuals	NA	6q24.1		rs75860909-G	0.016123143	4E-8		0.487393	[0.31-0.66] mmol/l decrease	Illumina [7701709] (imputed)	N
1652	chr6	139959341	139959342	rs75860909	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total cholesterol in chylomicrons and extremely large VLDL	4,348 individuals	NA	6q24.1		rs75860909-G	0.016123143	5E-8		0.484237	[0.31-0.66] mmol/l decrease	Illumina [7701709] (imputed)	N
1652	chr6	139959341	139959342	rs75860909	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial phospholipid levels in chylomicrons and extremely large VLDL	4,348 individuals	NA	6q24.1		rs75860909-G	0.016123143	3E-8		0.491754	[0.32-0.67] mmol/l decrease	Illumina [7701709] (imputed)	N
1652	chr6	139959341	139959342	rs75860909	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial free cholesterol in chylomicrons and extremely large VLDL	4,348 individuals	NA	6q24.1		rs75860909-G	0.016123143	5E-8		0.48503	[0.31-0.66] mmol/l decrease	Illumina [7701709] (imputed)	N
1652	chr6	139959341	139959342	rs75860909	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial chylomicrons and extremely large VLDL particle concentration	4,348 individuals	NA	6q24.1		rs75860909-G	0.016123143	4E-8		0.487	[0.31-0.66] mmol/l decrease	Illumina [7701709] (imputed)	N
1652	chr6	139960651	139960652	rs1936211	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	6q24.1		rs1936211-T	NR	3E-11		0.0138	[0.0097-0.0179] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
1652	chr6	139960651	139960652	rs1936211	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	6q24.1		rs1936211-T	0.572533	4E-15		0.01765829	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1652	chr6	139960651	139960652	rs1936211	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	6q24.1		rs1936211-C	0.427486	2E-12		0.015790183	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1652	chr6	139960651	139960652	rs1936211	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q24.1	NR	rs1936211-T	0.554178	6E-16				Affymetrix, Illumina [23467995] (imputed)	N
1652	chr6	139960651	139960652	rs1936211	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	6q24.1	NR	rs1936211-T	0.572605	2E-16		0.015644	[0.012-0.019] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
1652	chr6	139961293	139961294	rs34036350	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6q24.1	RP11-15H7.2	rs34036350-T	NR	4E-8		0.0164342	[0.011-0.022] unit increase	Affymetrix [319769] (imputed)	N
1652	chr6	139964141	139964142	rs7776303	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	6q24.1		rs7776303-T	0.066623	2E-10		0.023992	[0.016-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
1652	chr6	139964141	139964142	rs7776303	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	6q24.1		rs7776303-T	0.066593	1E-11		0.02885862	[0.02-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
1652	chr6	139965799	139965800	rs9403097	31794020	Matana A	2019-12-03	J Clin Endocrinol Metab	Genome-wide analysis identifies two susceptibility loci for positive thyroid peroxidase and thyroglobulin antibodies.	Thyroid autoantibody positivity (anti-thyroglobulin (TgAb) and/or anti-thyroid peroxidase  (TPOAb) levels)	619 Croatian ancestry cases, 1,994 Croatian ancestry controls	NA	6q24.1	AL592429.2	rs9403097-G	0.17	8E-7		0.1	[0.061-0.139] unit increase	Illumina [7411206] (imputed)	N
1652	chr6	139975942	139975943	rs17069163	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	IgA levels	16,883 Icelandic ancestry individuals	2,151 Swedish ancestry individuals	6q24.1	CITED2	rs17069163-C	0.2357	7E-7		0.06	NR SD units decrease	Illumina [21568490] (imputed)	N
1653	chr6	140005170	140005176	rs66520155	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	6q24.1		rs66520155-C	0.244295	2E-8		0.0132833	[0.0086-0.0179] unit decrease	Illumina [13479295] (imputed)	N
1653	chr6	140007876	140007877	rs17069206	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	6q24.1	LOC645434, LOC100132735	rs17069206-?	NR	2E-10		0.021230822	[0.015-0.028] unit decrease	Illumina [27896057] (imputed)	N
1653	chr6	140014574	140014575	rs3072199	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		FILNC1	rs3072199-?	NR	4E-10	(female)	0.700705	[NR] unit increase	Affymetrix [NR] (imputed)	N
1653	chr6	140027474	140027475	rs10499212	31991592	Coltell O	2020-01-24	Nutrients	Genome-Wide Association Study for Serum Omega-3 and Omega-6 Polyunsaturated Fatty Acids: Exploratory Analysis of the Sex-Specific Effects and Dietary Modulation in Mediterranean Subjects with Metabolic Syndrome.	Serum omega-3 polyunsaturated fatty acid concentration in metabolic syndrome	426 Mediterranean individuals	NA	6q24.1	intergenic	rs10499212-T	0.1	3E-6		0.642	[0.38-0.91] unit increase	Illumina [621723]	N
1653	chr6	140027474	140027475	rs10499212	31991592	Coltell O	2020-01-24	Nutrients	Genome-Wide Association Study for Serum Omega-3 and Omega-6 Polyunsaturated Fatty Acids: Exploratory Analysis of the Sex-Specific Effects and Dietary Modulation in Mediterranean Subjects with Metabolic Syndrome.	Serum docosahexaenoic fatty acid concentration in metabolic syndrome	426 Mediterranean individuals	NA	6q24.1	intergenic	rs10499212-T	0.1	2E-6		0.239	[0.14-0.34] unit increase	Illumina [621723]	N
1653	chr6	140040566	140040567	rs80120980	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6q24.1	NR	rs80120980-A	0.01045	5E-9	(ACAD11)	0.09275	NR unit increase	Illumina [1671387] (imputed)	N
1653	chr6	140099835	140099836	rs7751292	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	6q24.1		rs7751292-A	0.4	2E-20		9.26	z score increase	Affymetrix [9061022] (imputed)	N
1653	chr6	140099835	140099836	rs7751292	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	6q24.1		rs7751292-A	0.4	1E-11		6.75	z score increase	Affymetrix [9061022] (imputed)	N
1653	chr6	140099835	140099836	rs7751292	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	6q24.1	NR	rs7751292-A	0.3621	3E-13				NR [9056863] (imputed)	N
1653	chr6	140103856	140103857	rs7772473	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6q24.1		rs7772473-?	NR	1E-20				NR [~ 8900000] (imputed)	N
1654	chr6	140118813	140118814	rs72980962	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	6q24.1		rs72980962-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1654	chr6	140123103	140123104	rs61079096	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6q24.1	NR	rs61079096-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
1654	chr6	140139814	140139815	rs12664111	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6q24.1	NR	rs12664111-G	0.0919615409617097	6E-6	(IGP68)	0.2425	[0.14-0.35] unit decrease	Illumina [~ 2500000] (imputed)	N
1654	chr6	140153410	140153411	rs6903961	25089948	Theusch E	2014-10-01	Pharmacogenet Genomics	Ancestry and other genetic associations with plasma PCSK9 response to simvastatin.	Response to simvastatin treatment (PCSK9 protein level change)	562 European ancestry individuals	287 African American individuals	6q24.1	LOC100132735	rs6903961-A	0.167	9E-6	(EA)	0.111	[NR] unit decrease	Illumina [570422]	N
1654	chr6	140181717	140181718	rs72982919	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		AL050338.1	rs72982919-?	NR	8E-9	(female)	0.468385	[NR] unit increase	Affymetrix [NR] (imputed)	N
1654	chr6	140196082	140196083	rs17069431	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	6q24.1	Intergenic	rs17069431-T	NR	6E-7	(between families)	4.994	unit increase	Affymetrix [up to 15107142] (imputed)	N
1654	chr6	140231826	140231827	rs2223966	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	6q24.1	intergenic	rs2223966-A	0.7651	6E-17		0.0186	[0.014-0.023] unit increase	Affymetrix [18391927] (imputed)	N
1655	chr6	140249465	140249466	rs616279	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes (adjusted for BMI)	50,409 European ancestry cases, 523,897 European ancestry controls	NA	6q24.1	MIR3668	rs616279-A	0.7379	7E-7		1.04	[1.03-1.06]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1655	chr6	140271356	140271357	rs1102077	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	6q24.1	LOC100507477	rs1102077-A	0.7574	9E-16		0.0237	[0.018-0.03] unit increase	Affymetrix [19819130] (imputed)	N
1655	chr6	140271356	140271357	rs1102077	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	6q24.1	LOC100507477	rs1102077-A	0.7574	1E-6		0.0135	[0.008-0.019] unit increase	Affymetrix [19819130] (imputed)	N
1655	chr6	140271356	140271357	rs1102077	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	6q24.1	LOC100507477	rs1102077-A	0.7574	2E-9		0.0168	[0.011-0.022] unit increase	Affymetrix [19819130] (imputed)	N
1655	chr6	140271356	140271357	rs1102077	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	6q24.1	LOC100507477	rs1102077-A	0.7574	4E-15		0.0215	[0.016-0.027] unit increase	Affymetrix [19819130] (imputed)	N
1655	chr6	140271356	140271357	rs1102077	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	6q24.1		rs1102077-?	NR	6E-25				NR [~ 8900000] (imputed)	N
1655	chr6	140273646	140273647	rs642858	29782485	Rueger S	2018-05-21	PLoS Genet	Evaluation and application of summary statistic imputation to discover new height-associated loci.	Height	253,288 European ancestry individuals	336,474 European ancestry individuals	6q24.1	NR	rs642858-A	0.238428987040465	6E-6				NR [9276018] (imputed)	N
1655	chr6	140273646	140273647	rs642858	21490949	Sim X	2011-04-07	PLoS Genet	Transferability of type 2 diabetes implicated loci in multi-ethnic cohorts from Southeast Asia.	Type 2 diabetes	2,010 Chinese ancestry cases, 1,945 Chinese ancestry controls, 794 Malay ancestry cases, 1,240 Malay ancestry controls, 977 Asian Indian ancestry cases, 1,169 Asian Indian ancestry controls	NA	6q24.1	intergenic	rs642858-A	0.40	2E-6	(Indian)	1.35	[1.19-1.53]	Illumina [~ 2000000] (imputed)	N
1655	chr6	140280397	140280398	rs646695	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	6q24.1	CITED2	rs646695-C	0.24	5E-11		1.08	[1.05-1.10]	Affymetrix, Illumina [6224355] (imputed)	N
1655	chr6	140313717	140313718	rs1416288	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	6q24.1	LOC100507477	rs1416288-A	0.2425	3E-8		1.051	NR	Affymetrix [9154080] (imputed)	N
1655	chr6	140324581	140324582	rs62429521	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	6q24.1	NR	rs62429521-A	0.1456	2E-9		1.052	[1.04-1.07]	Affymetrix, Illumina [NR] (imputed)	N
1655	chr6	140371059	140371060	rs4896504	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	6q24.1	Intergenic	rs4896504-T	0.1109	5E-8	(MTAG)	0.0156	[0.01-0.021] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1655	chr6	140371059	140371060	rs4896504	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	6q24.1	Intergenic	rs4896504-T	0.1109	1E-8	(MTAG)	0.0151	[0.01-0.02] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1656	chr6	140383494	140383495	rs9403140	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6q24.1	NR	rs9403140-G	0.286	2E-6	(IFNgamma_STAT1_of_Monocytes)			Illumina [5084123] (imputed)	N
1656	chr6	140383623	140383624	rs146782026	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total lipids in large VLDL	4,348 individuals	NA	6q24.1		rs146782026-C	0.011755841	4E-8		0.615783	[0.4-0.84] mmol/l decrease	Illumina [7701709] (imputed)	N
1656	chr6	140383623	140383624	rs146782026	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total cholesterol in large VLDL	4,348 individuals	NA	6q24.1		rs146782026-C	0.011755841	3E-8		0.621078	[0.4-0.84] mmol/l decrease	Illumina [7701709] (imputed)	N
1656	chr6	140383623	140383624	rs146782026	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial phospholipid levels in large VLDL	4,348 individuals	NA	6q24.1		rs146782026-C	0.011755841	4E-8		0.617282	[0.4-0.84] mmol/l decrease	Illumina [7701709] (imputed)	N
1656	chr6	140383623	140383624	rs146782026	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial large VLDL particle concentration	4,348 individuals	NA	6q24.1		rs146782026-C	0.011755841	5E-8		0.613989	[0.39-0.83] mmol/l decrease	Illumina [7701709] (imputed)	N
1656	chr6	140383623	140383624	rs146782026	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial free cholesterol in medium VLDL	4,348 individuals	NA	6q24.1		rs146782026-C	0.011914439	5E-8		0.606718	[0.39-0.82] mmol/l decrease	Illumina [7701709] (imputed)	N
1656	chr6	140383623	140383624	rs146782026	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial free cholesterol in large VLDL	4,348 individuals	NA	6q24.1		rs146782026-C	0.011755841	2E-8		0.632592	[0.41-0.85] mmol/l decrease	Illumina [7701709] (imputed)	N
1656	chr6	140383732	140383733	rs7763294	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	6q24.1	CITED2	rs7763294-T	0.3161	7E-12		0.1804	[0.13-0.23] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1656	chr6	140385394	140385395	rs181937009	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6q24.1	NR	rs181937009-A	NR	2E-9		0.028	unit increase	Affymetrix [at least 7091467] (imputed)	N
1656	chr6	140385394	140385395	rs181937009	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6q24.1	NR	rs181937009-A	0.761	3E-9	(EA)	0.03	unit increase	Affymetrix [at least 7091467] (imputed)	N
1656	chr6	140385394	140385395	rs181937009	28753643	Yeo A	2017-07-28	PLoS One	Pharmacogenetic meta-analysis of baseline risk factors, pharmacodynamic, efficacy and tolerability endpoints from two large global cardiovascular outcomes trials for darapladib.	Major coronary event in cardiovascular disease (time to event) (darapladib treatment interaction)	1,318 European, African American, Asian and other ancestry darapladib-treated cases, 1,440 European, African American, Asian and other ancestry placebo-treated cases	NA	6q24.1	intergenic	rs181937009-G	0.224	1E-7				Affymetrix, Illumina [9334585] (imputed)	N
1656	chr6	140401393	140401394	rs138397133	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6q24.1	NR	rs138397133-C	0.01394	4E-9	(ORM2)	0.1552	NR unit increase	Illumina [1671387] (imputed)	N
1656	chr6	140417608	140417609	rs644333	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	6q24.1		rs644333-A	NR	6E-15		0.0142	[0.011-0.018] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1656	chr6	140442325	140442326	rs116955121	30745170	Strawbridge RJ	2019-02-07	EBioMedicine	Identification of novel genome-wide associations for suicidality in UK Biobank, genetic correlation with psychiatric disorders and polygenic association with completed suicide.	Suicidality (suicidal ideation/attempts)	108,090 British ancestry individuals	NA	6q24.1	NR	rs116955121-A	0.02	2E-8	(adjusted for psychiatric disorders)	0.199	NR unit increase	Affymetrix [9481578] (imputed)	N
1656	chr6	140448846	140448847	rs75402058	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	6q24.1	NR	rs75402058-?	NR	7E-6	(EA)	0.9986	[0.57-1.43] unit decrease	Illumina [up to 11892802] (imputed)	N
1656	chr6	140473066	140473067	rs188002	34177598	Wolking S	2021-06-09	Front Pharmacol	Role of Common Genetic Variants for Drug-Resistance to Specific Anti-Seizure Medications.	Response to phenytoin in focal epilepsy	71 European ancestry cases, 218 European ancestry controls	NA			rs188002-?	NR	5E-7				Illumina [NR] (imputed)	N
1657	chr6	140511518	140511519	rs117325033	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	6q24.1		rs117325033-T	0.995	1E-13		0.56	[-0.71--0.41] % decrease	Affymetrix [NR] (imputed)	N
1657	chr6	140516967	140516968	rs76846186	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	6q24.1	NR	rs76846186-?	NR	2E-8	(Native Hawaiian)	1.4779	[NR] unit increase	Illumina [up to 11892802] (imputed)	N
1657	chr6	140611418	140611419	rs9376511	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6q24.1	NR	rs9376511-G	0.166	7E-6	(IFNgamma_STAT1_of_Monocytes)			Illumina [5084123] (imputed)	N
1657	chr6	140611418	140611419	rs9376511	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	6q24.1	CITED2	rs9376511-A	0.796707	9E-10		0.0151255	[0.01-0.02] unit increase	Affymetrix [NR] (imputed)	N
1657	chr6	140620574	140620575	rs9389786	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6q24.1		rs9389786-?	NR	1E-17				NR [~ 8900000] (imputed)	N
1657	chr6	140629501	140629502	rs188879837	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6q24.1	NR	rs188879837-A	0.0122	4E-10	(ORM2)	0.1748	NR unit increase	Illumina [1671387] (imputed)	N
1658	chr6	140658872	140658873	rs9385910	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	6q24.1	NR	rs9385910-?		2E-10				NR [7428630] (imputed)	N
1658	chr6	140701422	140701423	rs11155111	31220337	Carr DF	2019-06-20	Clin Pharmacol Ther	Genome-wide association study of statin-induced myopathy in patients recruited using the UK clinical practice research datalink.	Simvastatin-induced myopathy	85 European ancestry cases, 2,501 controls	NA	6q24.1	intergenic	rs11155111-?	NR	6E-6		2.03	[1.49-2.75]	Illumina [654642] (imputed)	N
1658	chr6	140725720	140725721	rs72977992	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	6q24.1		rs72977992-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1658	chr6	140733438	140733439	rs35686278	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	6q24.1	intergenic	rs35686278-A	0.2265	9E-11		0.0146	[0.01-0.019] unit increase	Affymetrix [18391927] (imputed)	N
1658	chr6	140744549	140744550	rs192338477	29213071	Mendez-Giraldez R	2017-12-06	Sci Rep	GWAS of the electrocardiographic QT interval in Hispanics/Latinos generalizes previously identified loci and identifies population-specific signals.	QT interval	15,997 Hispanic/Latino individuals	NA	6q24.1	MIR3668	rs192338477-T	0.99	2E-6		11.5	[6.82-16.18] ms increase	Affymetrix, Illumina [up to 17586686] (imputed)	N
1658	chr6	140757693	140757694	rs74935095	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	6q24.1	NR	rs74935095-?	NR	4E-6		0.0077738	[0.0045-0.0111] unit decrease	Affymetrix [805426] (imputed)	N
1659	chr6	140838473	140838474	rs146383502	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	6q24.1	NR	rs146383502-?	NR	5E-7	(Native Hawaiian)	1.2123	[NR] unit increase	Illumina [up to 11892802] (imputed)	N
1659	chr6	140881825	140881826	rs200999156	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Bacterial meningitis	842 European ancestry cases, 82,778 European ancestry controls	NA	6q24.1	NR	rs200999156-?	NR	7E-6		1.266	[0.79-1.74] unit decrease	Illumina [at least 560000] (imputed)	N
1660	chr6	141021850	141021851	rs6900992	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	6q24.1	MIR4465	rs6900992-C	NR	4E-6	(wake after sleep onset, weekdays)	0.0685	[0.039-0.098] unit increase	Affymetrix [7141204] (imputed)	N
1660	chr6	141022535	141022536	rs7740706	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	6q24.1	MIR4465	rs7740706-G	NR	4E-6	(number of awakenings after sleep onset, weekdays)	0.09867	[0.057-0.14] unit increase	Affymetrix [7141204] (imputed)	N
1661	chr6	141034723	141034724	rs150555765	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	6q24.1		rs150555765-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1661	chr6	141057940	141057941	rs2876449	27802415	Salvi E	2016-10-31	Hypertension	Genome-Wide and Gene-Based Meta-Analyses Identify Novel Loci Influencing Blood Pressure Response to Hydrochlorothiazide.	Systolic blood pressure response to hydrochlorothiazide in hypertension	1,739 European ancestry individuals	430 African American individuals	6q24.1	CITED2, NMBR	rs2876449-T	0.03	7E-6	(EA)	2.8	[NR] mmHg decrease	Affymetrix, Illumina [up to 2500000] (imputed)	N
1661	chr6	141058242	141058243	rs139486976	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	6q24.1	NR	rs139486976-?	NR	4E-6		0.0078404	[0.0045-0.0112] unit decrease	Affymetrix [805426] (imputed)	N
1661	chr6	141092193	141092194	rs683257	28608620	Coleman JRI	2017-06-13	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of facial emotion recognition in children and association with polygenic risk for mental health disorders.	Facial emotion recognition (angry faces)	4,097 European ancestry individuals	NA	6q24.1	intergenic	rs683257-A	0.909	5E-6		4.58	z score decrease	Illumina [2487351] (imputed)	N
1661	chr6	141123710	141123711	rs61613191	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	6q24.1	LOC729070, LOC729076	rs61613191-A	0.004	7E-6		9.56	[2.88-31.7]	Illumina [1556551]	N
1662	chr6	141169824	141169825	rs11155133	19684603	Trevino LR	2009-08-16	Nat Genet	Germline genomic variants associated with childhood acute lymphoblastic leukemia.	Acute lymphoblastic leukemia (childhood)	317 European ancestry cases, 17,958 European ancestry controls	NA	6q24.1	intergenic	rs11155133-G	0.01	3E-7		3.62	[2.10-6.00]	Affymetrix [307944]	N
1662	chr6	141291656	141291657	rs150988192	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	6q24.1		rs150988192-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1662	chr6	141293449	141293450	rs117740768	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	6q24.1	Intergenic	rs117740768-A	0.2718	7E-9	(MTAG)	0.0116	[0.0077-0.0155] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1662	chr6	141293449	141293450	rs117740768	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	6q24.1	Intergenic	rs117740768-T	0.7282	5E-8		0.012	[0.0077-0.0163] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1663	chr6	141335139	141335140	rs7756435	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	6q24.1	NA	rs7756435-?		8E-12				Affymetrix, Illumina [NR] (imputed)	N
1663	chr6	141362281	141362282	rs113803678	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	6q24.1		rs113803678-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1664	chr6	141443539	141443540	rs2931796	29782485	Rueger S	2018-05-21	PLoS Genet	Evaluation and application of summary statistic imputation to discover new height-associated loci.	Height	253,288 European ancestry individuals	336,474 European ancestry individuals	6q24.1	NR	rs2931796-T	0.374504099444591	5E-6				NR [9276018] (imputed)	N
1664	chr6	141473362	141473363	rs1452991	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	6q24.1	NMBR	rs1452991-G	0.627782	5E-12		0.010059	[0.0072-0.0129] unit decrease	Affymetrix [12370749]	N
1665	chr6	141575818	141575819	rs1452987	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6q24.1		rs1452987-?	NR	4E-14				NR [~ 8900000] (imputed)	N
1665	chr6	141591792	141591793	rs12194480	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	6q24.1	NR	rs12194480-?	NR	2E-6		0.0080787	[0.0048-0.0114] unit decrease	Affymetrix [805426] (imputed)	N
1665	chr6	141665521	141665522	rs13213884	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6q24.1	RP11-63E9.1	rs13213884-T	0.247	2E-8		0.0419	[0.027-0.056] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1665	chr6	141671731	141671732	rs9376609	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	6q24.1	NA	rs9376609-A	0.3847	2E-10		0.0112	[0.0077-0.0147] unit increase	NR [~ 27400000] (imputed)	N
1666	chr6	141700707	141700708	rs11754010	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter alcoholic beverage consumption	336,448 European ancestry individuals	39,924 European ancestry individuals	6q24.1	MIR4465	rs11754010-T	0.6259	1E-7		0.0056	[0.0036-0.0076] unit increase	Affymetrix [~ 7740000] (imputed)	N
1666	chr6	141713233	141713234	rs17070787	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	6q24.1	RP11-63E9.1	rs17070787-A	0.7551	8E-6		0.0361	[0.02-0.052] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1666	chr6	141714180	141714181	rs6914579	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	6q24.1	Intergenic	rs6914579-T	0.3591	3E-9	(MTAG)	0.011	[0.0073-0.0147] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1666	chr6	141714180	141714181	rs6914579	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	6q24.1	Intergenic	rs6914579-T	0.3591	1E-8		0.0117	[0.0078-0.0156] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1666	chr6	141775034	141775035	rs142438673	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	6q24.1	AK097143	rs142438673-G	NR	7E-6		0.881167	[0.5-1.27] unit decrease	Illumina [at least 950000] (imputed)	N
1666	chr6	141813047	141813048	rs12190183	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Caudal anterior-cingulate cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	6q24.1	NR	rs12190183-?		1E-6				Illumina [4322238] (imputed)	N
1667	chr6	141856593	141856594	rs6570465	19901119	Trevino LR	2009-11-09	J Clin Oncol	Germline genetic variation in an organic anion transporter polypeptide associated with methotrexate pharmacokinetics and clinical effects.	Methotrexate pharmacokinetics (acute lymphoblastic leukemia)	315 European ancestry cases, 73 African American cases, 5 Asian ancestry cases, 247 cases	NA	6q24.1	intergenic	rs6570465-C	0.02	4E-7			[NR]	Affymetrix [398699]	N
1667	chr6	141857133	141857134	rs7742587	19901119	Trevino LR	2009-11-09	J Clin Oncol	Germline genetic variation in an organic anion transporter polypeptide associated with methotrexate pharmacokinetics and clinical effects.	Methotrexate pharmacokinetics (acute lymphoblastic leukemia)	315 European ancestry cases, 73 African American cases, 5 Asian ancestry cases, 247 cases	NA	6q24.1	intergenic	rs7742587-C	0.02	3E-7			[NR]	Affymetrix [398699]	N
1667	chr6	141859281	141859282	rs9403317	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	6q24.1	NR	rs9403317-?	NR	2E-8				Illumina [at least 7383741] (imputed)	N
1667	chr6	141878919	141878920	rs6930558	31097437	Plotnikov D	2019-05-16	Br J Ophthalmol	Association between birth weight and refractive error in adulthood: a Mendelian randomisation study.	Birth weight	188,039 European ancestry individuals	NA	6q24.1	NR	rs6930558-T	0.25	4E-9		0.022	[0.014-0.03] z score increase	Affymetrix [up to 10400000] (imputed)	N
1667	chr6	141878919	141878920	rs6930558	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	6q24.1	NMBR	rs6930558-T	0.747004	3E-13		0.021812	[0.016-0.028] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1667	chr6	141906079	141906080	rs17178527	31513605	Jeon S	2019-09-12	PLoS One	Structural equation modeling for hypertension and type 2 diabetes based on multiple SNPs and multiple phenotypes.	Waist circumference	8,842 Korean ancestry individuals	NA	6q24.1	AK097143	rs17178527-?		3E-6				NR [327872]	N
1667	chr6	141906079	141906080	rs17178527	31513605	Jeon S	2019-09-12	PLoS One	Structural equation modeling for hypertension and type 2 diabetes based on multiple SNPs and multiple phenotypes.	Body mass index	8,842 Korean ancestry individuals	NA	6q24.1	AK097143	rs17178527-?		2E-8				NR [327872]	N
1667	chr6	141906079	141906080	rs17178527	30045251	Lee MR	2018-07-01	Medicine (Baltimore)	Causal association of body mass index with hypertension using a Mendelian randomization design.	Body mass index	8,832 Korean ancestry individuals	NA	6q24.1	NR	rs17178527-?	NR	2E-8		0.31	[0.2-0.42] unit decrease	Affymetrix [1590162] (imputed)	N
1667	chr6	141926003	141926004	rs34596385	24478790	Lee JH	2014-01-17	Front Genet	Genome wide association and linkage analyses identified three loci-4q25, 17q23.2, and 10q11.21-associated with variation in leukocyte telomere length: the Long Life Family Study.	Telomere length	4,829 European ancestry individuals from 586 families with exceptional longevity	NA	6q24.1	AK097143	rs34596385-T	0.046	6E-6			[NR]	Illumina [9250000] (imputed)	N
1668	chr6	141991630	141991631	rs561736395	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-hip ratio	1,254 whole genome sequenced European ancestry individuals, 3,071 whole genome sequenced individuals, 29,723 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,053 Mylopotamos (founder/genetic isolate) individuals, 879 Pomak (founder/genetic isolate) individuals	206,053 European ancestry individuals	6q24.1	RPS3AP23	rs561736395-A	0.9948	7E-6		0.3216	[0.18-0.46] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1668	chr6	141992624	141992625	rs7770810	30045251	Lee MR	2018-07-01	Medicine (Baltimore)	Causal association of body mass index with hypertension using a Mendelian randomization design.	Body mass index	8,832 Korean ancestry individuals	NA	6q24.1	NR	rs7770810-?	NR	2E-8		0.311	[0.2-0.42] unit decrease	Affymetrix [1590162] (imputed)	N
1668	chr6	141994354	141994355	rs1577948	30045251	Lee MR	2018-07-01	Medicine (Baltimore)	Causal association of body mass index with hypertension using a Mendelian randomization design.	Body mass index	8,832 Korean ancestry individuals	NA	6q24.1	NR	rs1577948-?	NR	2E-8		0.31	[0.2-0.42] unit decrease	Affymetrix [1590162] (imputed)	N
1668	chr6	141995371	141995372	rs1572604	30045251	Lee MR	2018-07-01	Medicine (Baltimore)	Causal association of body mass index with hypertension using a Mendelian randomization design.	Body mass index	8,832 Korean ancestry individuals	NA	6q24.1	NR	rs1572604-?	NR	2E-8		0.31	[0.2-0.42] unit decrease	Affymetrix [1590162] (imputed)	N
1668	chr6	141995943	141995944	rs1572605	30045251	Lee MR	2018-07-01	Medicine (Baltimore)	Causal association of body mass index with hypertension using a Mendelian randomization design.	Body mass index	8,832 Korean ancestry individuals	NA	6q24.1	NR	rs1572605-?	NR	2E-8		0.31	[0.2-0.42] unit decrease	Affymetrix [1590162] (imputed)	N
1668	chr6	142012919	142012920	rs9373320	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	6q24.1	NR	rs9373320-?	NR	2E-6				Illumina [at least 7383741] (imputed)	N
1668	chr6	142024339	142024340	rs17054002	30045251	Lee MR	2018-07-01	Medicine (Baltimore)	Causal association of body mass index with hypertension using a Mendelian randomization design.	Body mass index	8,832 Korean ancestry individuals	NA	6q24.1	NR	rs17054002-?	NR	1E-7		0.296	[0.19-0.41] unit decrease	Affymetrix [1590162] (imputed)	N
1668	chr6	142033725	142033726	rs17071124	23728906	Byrne EM	2013-05-31	Am J Med Genet B Neuropsychiatr Genet	A genome-wide association study of sleep habits and insomnia.	Sleep quality	2,315 European ancestry individuals	NA	6q24.1	intergenic	rs17071124-G	0.01	3E-6		0.75	[0.44-1.06] unit increase	Illumina [2380486] (imputed)	N
1669	chr6	142172788	142172789	rs12201100	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial lung cancer	1,993 European ancestry cases, 33,960 European ancestry controls	NA	6q24.1	NR	rs12201100-G	0.014	1E-7		2.69	[1.87-3.87]	Illumina [9327222] (imputed)	N
1669	chr6	142199468	142199469	rs1414748	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	6q24.1	NR	rs1414748-?	NR	2E-6				Illumina [at least 7383741] (imputed)	N
1670	chr6	142267803	142267804	rs2842765	33602968	Skuladottir AT	2021-02-18	Sci Rep	A meta-analysis uncovers the first sequence variant conferring risk of Bell's palsy.	Bell's palsy	4,714 European ancestry cases, 1,011,520 European ancestry controls	NA	6q24.1	LOC105378031	rs2842765-A	0.2478	1E-6		1.12356	NR	Affymetrix, Illumina [30341632] (imputed)	N
1670	chr6	142338902	142338903	rs55987383	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6q24.1	NMBR	rs55987383-G	NR	2E-8		0.0180727	[0.012-0.024] unit decrease	Affymetrix [321016] (imputed)	N
1671	chr6	142344491	142344491	rs552711851	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6q24.1	NMBR	rs552711851-A	0.2108	1E-6		0.0381	[0.023-0.054] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1671	chr6	142368006	142368007	rs147590351	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	6q24.1		rs147590351-?	NR	6E-21				NR [~ 8900000] (imputed)	N
1671	chr6	142424982	142424983	rs6570495	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6q24.1	RP11-137J7.2	rs6570495-T	NR	6E-11		0.0184233	[0.013-0.024] unit increase	Affymetrix [321016] (imputed)	N
1671	chr6	142425551	142425552	rs7749578	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6q24.1		rs7749578-?	NR	8E-57				NR [~ 8900000] (imputed)	N
1671	chr6	142425551	142425552	rs7749578	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	6q24.1	NR	rs7749578-?	NR	3E-6				Illumina [at least 7383741] (imputed)	N
1672	chr6	142482214	142482215	rs225644	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	6q24.1		rs225644-T	0.26	2E-9		5.99	z score increase	Affymetrix [9061022] (imputed)	N
1672	chr6	142486907	142486908	rs6570497	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	6q24.1		rs6570497-?	NR	6E-24				NR [~ 8900000] (imputed)	N
1672	chr6	142502634	142502635	rs114450476	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (90 or 130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	6q24.1	VTA1	rs114450476-?	NR	6E-6		0.285	[0.077-0.493] unit decrease	Illumina [at least 13000000] (imputed)	N
1672	chr6	142512135	142512136	rs225675	23400010	Del-Aguila JL	2013-02-12	Pharmacogenomics J	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NA	6q24.1	GPR126	rs225675-G	0.19	1E-7	(AA-glucose response)	5.29	[3.35-7.23] mg/dL decrease	Affymetrix, Illumina [> 2000000] (imputed)	N
1672	chr6	142515441	142515442	rs138647241	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6q24.1	VTA1	rs138647241-CA	0.721	4E-9		0.0448	[0.03-0.06] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1672	chr6	142526469	142526470	rs225691	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6q24.2	VTA1	rs225691-C	NR	8E-9		0.0165034	[0.011-0.022] unit decrease	Affymetrix [321016] (imputed)	N
1672	chr6	142527141	142527142	rs225694	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	6q24.2	GPR126	rs225694-?	NR	1E-7	(Conditioned on rs7763064)		[NR]	Affymetrix, Illumina [2834208] (imputed)	N
1672	chr6	142542863	142542864	rs140924844	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6q24.2		rs140924844-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1672	chr6	142548098	142548099	rs225717	21060863	Ikram MK	2010-10-28	PLoS Genet	Four novel Loci (19q13, 6q24, 12q24, and 5q14) influence the microcirculation in vivo.	Retinal vascular caliber	15,358 European ancestry individuals	6,652 European ancestry individuals	6q24.2	VTA1, NMBR	rs225717-C	0.23	1E-16	(Retinal venular caliber)	1.9	[1.45-2.35] um decrease	Affymetrix, Illumina [2194468] (imputed)	N
1672	chr6	142551081	142551082	rs6928024	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	6q24.2	VTA1	rs6928024-G	0.73	2E-11	(conditional on rs9399401)	1.08	[NR]	Affymetrix, Illumina [6224355] (imputed)	N
1672	chr6	142560956	142560957	rs9385988	33766948	Zhu Z	2021-03-25	Eur Respir J	A large-scale genome-wide association analysis of lung function in the Chinese population identifies novel loci and highlights shared genetic etiology with obesity.	Lung function (FEV1)	100,285 Chinese ancestry individuals	NA	6q24.2		rs9385988-A	0.28	7E-9		0.029	L decrease	Affymetrix [NR] (imputed)	N
1672	chr6	142560956	142560957	rs9385988	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	6q24.2	VTA1	rs9385988-A	0.7232	6E-21		0.0264	[0.021-0.032] unit decrease	Affymetrix [19819130] (imputed)	N
1672	chr6	142560956	142560957	rs9385988	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	6q24.2	VTA1	rs9385988-A	0.7232	3E-9		0.0155	[0.01-0.021] unit decrease	Affymetrix [19819130] (imputed)	N
1672	chr6	142560956	142560957	rs9385988	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	6q24.2	VTA1	rs9385988-A	0.7232	2E-32		0.0315	[0.026-0.037] unit decrease	Affymetrix [19819130] (imputed)	N
1672	chr6	142560956	142560957	rs9385988	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	6q24.2	VTA1	rs9385988-A	0.7232	1E-26		0.0279	[0.023-0.033] unit decrease	Affymetrix [19819130] (imputed)	N
1672	chr6	142561243	142561244	rs4594972	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	6q24.2		rs4594972-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1672	chr6	142563241	142563242	rs225748	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume (adjusted for hypertension)	46,055 European ancestry individuals, 2,469 African American individuals	NA	6q24.2	VTA1	rs225748-C	0.7582	2E-6		0.0328	[0.019-0.047] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1672	chr6	142563241	142563242	rs225748	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume (adjusted for hypertension)	46,055 European ancestry individuals	NA	6q24.2	VTA1	rs225748-C	0.7582	2E-6		0.0325	[0.019-0.046] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1672	chr6	142563241	142563242	rs225748	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	48,454 European ancestry individuals	NA	6q24.2	VTA1	rs225748-C	0.7582	3E-6		0.0316	[0.018-0.045] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1672	chr6	142563241	142563242	rs225748	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	2,516 African American individuals, 48,454 European ancestry individuals	NA	6q24.2	VTA1	rs225748-C	0.7582	3E-6		0.0323	[0.019-0.046] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1672	chr6	142574652	142574653	rs6902309	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	6q24.2	NR	rs6902309-?	NR	6E-7				Illumina [at least 7383741] (imputed)	N
1672	chr6	142579091	142579092	rs9484606	32503578	Yang DW	2020-06-05	J Transl Med	Genome-wide association study identifies genetic susceptibility loci and pathways of radiation-induced acute oral mucositis.	Response to radiotherapy in nasopharyngeal carcinoma (acute oral mucositis)	349 East Asian ancestry cases, 1,118 East Asian ancestry treated controls	NA	6q24.2	VTA1, ADGRG6	rs9484606-?	NR	3E-6		1.7	[1.36-2.13]	Illumina [3968928] (imputed)	N
1672	chr6	142579369	142579370	rs9496306	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6q24.2	RP11-753B14.1	rs9496306-T	NR	4E-11		0.0194396	[0.014-0.025] unit decrease	Affymetrix [321016] (imputed)	N
1672	chr6	142579369	142579370	rs9496306	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	6q24.2	AL360007.1	rs9496306-T	0.3568	1E-14		0.0151	[0.011-0.019] unit decrease	Affymetrix [18391927] (imputed)	N
1672	chr6	142579369	142579370	rs9496306	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6q24.2	NR	rs9496306-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
1672	chr6	142582402	142582403	rs9321859	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6q24.2	AL360007.1	rs9321859-G	NR	5E-10		0.0200662	[0.014-0.026] unit decrease	Affymetrix [323123] (imputed)	N
1672	chr6	142584428	142584429	rs4518515	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	6q24.2	GPR126	rs4518515-A	0.435903	3E-8		0.017626	[0.011-0.024] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
1672	chr6	142589339	142589339	rs200427144	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	6q24.2	intergenic	rs200427144-TA	NR	3E-6				Illumina [up to 11995908] (imputed)	N
1672	chr6	142597119	142597120	rs1931990	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6q24.2	AL360007.1	rs1931990-A	NR	2E-9		0.0175279	[0.012-0.023] unit increase	Affymetrix [321114] (imputed)	N
1672	chr6	142597119	142597120	rs1931990	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6q24.2	AL360007.1	rs1931990-A	NR	3E-9		0.0172149	[0.012-0.023] unit increase	Affymetrix [321016] (imputed)	N
1672	chr6	142605870	142605871	rs2152090	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6q24.2	NR	rs2152090-?		2E-8	(Average across all tracts)			NR [8955960] (imputed)	N
1673	chr6	142627498	142627499	rs9399398	33527407	Truong T	2021-02-02	Int J Cancer	Multiethnic genome-wide association study of differentiated thyroid cancer in the EPITHYR consortium.	Differentiated thyroid cancer	1,554 European ancestry cases, 1,973 European ancestry controls, 301 Oceanian ancestry cases, 348 Oceanian ancestry controls	NA	6q24.2	NR	rs9399398-A	0.11	5E-6				Illumina [6479975] (imputed)	N
1673	chr6	142633743	142633744	rs9389983	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6q24.2	ADGRG6	rs9389983-T	0.49	3E-6		0.0321	[0.019-0.046] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1673	chr6	142636739	142636740	rs12200161	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6q24.2	GPR126	rs12200161-T	NR	2E-31		0.0453583	[0.038-0.053] unit decrease	Affymetrix [321016] (imputed)	N
1673	chr6	142636739	142636740	rs12200161	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6q24.2	GPR126	rs12200161-T	NR	1E-24		0.0435835	[0.035-0.052] unit decrease	Affymetrix [323123] (imputed)	N
1673	chr6	142648055	142648056	rs1418201	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6q24.2	GPR126	rs1418201-T	NR	3E-47		0.0489463	[0.042-0.056] unit decrease	Affymetrix [323123] (imputed)	N
1673	chr6	142648234	142648235	rs1891308	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	6q24.2		rs1891308-A	NR	4E-136		0.0338	[0.031-0.037] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1673	chr6	142652343	142652344	rs9389984	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6q24.2	GPR126	rs9389984-T	NR	2E-13		0.025664	[0.019-0.032] unit decrease	Affymetrix [321114] (imputed)	N
1673	chr6	142653897	142653898	rs9389985	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Lung volume	32,860 European ancestry individuals	NA	6q24.2	ADGRG6	rs9389985-?	NR	2E-11		0.0495	NR L decrease	Affymetrix [9390170] (imputed)	N
1673	chr6	142653897	142653898	rs9389985	31417091	Kou I	2019-08-15	Nat Commun	Genome-wide association study identifies 14 previously unreported susceptibility loci for adolescent idiopathic scoliosis in Japanese.	Adolescent idiopathic scoliosis	5,327 Japanese ancestry cases, 73,884 Japanese ancestry controls	NA	6q24.2	ADGRG6	rs9389985-G	0.43	4E-20		1.21	[1.16-1.26]	Illumina [9332516] (imputed)	N
1673	chr6	142655489	142655490	rs2039987	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	6q24.2		rs2039987-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1673	chr6	142655800	142655801	rs7741741	31417091	Kou I	2019-08-15	Nat Commun	Genome-wide association study identifies 14 previously unreported susceptibility loci for adolescent idiopathic scoliosis in Japanese.	Adolescent idiopathic scoliosis	5,004 Japanese ancestry female cases, 33,679 Japanese ancestry female controls	NA	6q24.2	ADGRG6	rs7741741-A	0.427478	1E-17		1.21	[1.16-1.27]	Illumina [9332516] (imputed)	N
1673	chr6	142655800	142655801	rs7741741	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	6q24.2	NR	rs7741741-?	NR	1E-8		0.03341483	[0.022-0.045] unit decrease	Illumina [34656550] (imputed)	N
1673	chr6	142655800	142655801	rs7741741	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	6q24.2	GPR126	rs7741741-T	0.72	1E-20		1.24	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
1673	chr6	142663847	142663848	rs74967581	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6q24.2	GPR126	rs74967581-T	NR	8E-19		0.0495573	[0.039-0.061] unit decrease	Affymetrix [323123] (imputed)	N
1673	chr6	142666860	142666861	rs972982	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	6q24.2		rs972982-C	0.434113	8E-27		0.0216772	[0.018-0.026] unit decrease	Illumina [13479295] (imputed)	N
1673	chr6	142666860	142666861	rs972982	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	6q24.2	ADGRG6	rs972982-?	NR	1E-33		0.03460007	[0.029-0.04] unit decrease	Illumina [27896057] (imputed)	N
1673	chr6	142668900	142668901	rs9399401	30940143	Zhu Z	2019-04-02	Respir Res	Genetic overlap of chronic obstructive pulmonary disease and cardiovascular disease-related traits: a large-scale genome-wide cross-trait analysis.	Chronic obstructive pulmonary disease or high blood pressure (pleiotropy)	12,550 European and unknown ancestry chronic obstructive pulmonary disease cases, 46,368 European and unknown ancestry controls, 144,793 European ancestry high blood pressure cases, 313,761 European ancestry controls	NA	6q24.2	GPR126, LOC153910	rs9399401-?	NR	9E-10				Affymetrix [up to 7325140] (imputed)	N
1673	chr6	142668900	142668901	rs9399401	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	6q24.2	ADGRG6	rs9399401-T	0.72	2E-40		1.16	[1.13-1.18]	Affymetrix, Illumina [6224355] (imputed)	N
1673	chr6	142668900	142668901	rs9399401	28166215	Hobbs BD	2017-02-06	Nat Genet	Genetic loci associated with chronic obstructive pulmonary disease overlap with loci for lung function and pulmonary fibrosis.	Chronic obstructive pulmonary disease	11,157 European ancestry cases, 36,699 European ancestry controls, 1,142 African American cases, 2,380 African American controls, 199 Korean ancestry cases, 6,741 Korean ancestry controls, 52 Hispanic cases, 548 Hispanic controls.	12,051 European ancestry cases, 11,111 European ancestry controls, 153 Korean ancestry cases, 205 Korean ancestry controls.	6q24.2	ADGRG6, GPR126	rs9399401-T	0.72	2E-19		1.15	[1.12,1.19]	Affymetrix, Illumina [NR] (imputed)	N
1673	chr6	142672300	142672301	rs9389987	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6q24.2	NR	rs9389987-?	NR	3E-32				Affymetrix [~ 8270000] (imputed)	N
1673	chr6	142679571	142679572	rs6570507	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	6q24.2	NR	rs6570507-?	NR	8E-7		0.03132462	[0.019-0.044] unit decrease	Illumina [34656550] (imputed)	N
1673	chr6	142679571	142679572	rs6570507	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	6q24.2	GPR126	rs6570507-A	0.299567	3E-33	(females)	0.04497	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1673	chr6	142679571	142679572	rs6570507	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	6q24.2	GPR126	rs6570507-A	0.299567	2E-31		0.03328	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1673	chr6	142679571	142679572	rs6570507	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	6q24.2	GPR126	rs6570507-A	0.299567	8E-24		0.02911	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1673	chr6	142679571	142679572	rs6570507	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	6q24.2	GPR126	rs6570507-A	0.299567	1E-23	(females)	0.03921	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1673	chr6	142679571	142679572	rs6570507	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	6q24.2	GPR126	rs6570507-A	0.299567	1E-6	(females)	0.01305	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1673	chr6	142679571	142679572	rs6570507	30395268	Khanshour AM	2018-11-01	Hum Mol Genet	Genome-wide meta-analysis and replication studies in multiple ethnicities identify novel adolescent idiopathic scoliosis susceptibility loci.	Adolescent idiopathic scoliosis	2,295 East Asian ancestry cases, 11,084 East Asian ancestry controls, 1,503 European ancestry cases, 18,594 European ancestry controls	2,737 East Asian ancestry cases, 56,815 East Asian ancestry controls, 1,421 European ancestry cases, 1,966 European ancestry controls	6q24.2	GPR126	rs6570507-?		7E-13		1.23	[1.16-1.3]	Affymetrix, Illumina [3493832] (imputed)	N
1673	chr6	142679571	142679572	rs6570507	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in smokers	19,276 European ancestry women, 16,408 European ancestry men, 973 European ancestry individuals, 1,701 African American/Afro-Caribbean ancestry women, 903 African American/Afro-Caribbean ancestry men, 10 Indian Asian ancestry women, 957 Indian Asian ancestry men, 267 Filipino ancestry women, 475 Hispanic/Latino ancestry women, 446 Hispanic/Latino ancestry men	5,485 European ancestry women, 6,471 European ancestry men, 13,416 European ancestry individuals, 253 African American/Afro-Caribbean ancestry women, 208 African American/Afro-Caribbean ancestry men	6q24.2	GPR126	rs6570507-A	0.3186	8E-6		0.0373	[0.021-0.054] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1673	chr6	142679571	142679572	rs6570507	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in non-smokers	77,113 European ancestry women, 47,319 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	6q24.2	GPR126	rs6570507-A	0.3186	4E-8		0.025	[0.016-0.034] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1673	chr6	142679571	142679572	rs6570507	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in non-smokers	77,113 European ancestry women, 47,319 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	6q24.2	GPR126	rs6570507-A	0.3186	4E-6	(men)	0.0293	[0.017-0.042] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1673	chr6	142679571	142679572	rs6570507	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	6q24.2	GPR126	rs6570507-A	0.3186	2E-8	(men)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1673	chr6	142679571	142679572	rs6570507	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	6q24.2	GPR126	rs6570507-A	0.3186	2E-11				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1673	chr6	142679571	142679572	rs6570507	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	6q24.2	GPR126	rs6570507-A	0.3186	2E-8	(men)	0.0306	[0.02-0.041] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1673	chr6	142679571	142679572	rs6570507	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	6q24.2	GPR126	rs6570507-A	0.3186	2E-10		0.0256	[0.018-0.033] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1673	chr6	142679571	142679572	rs6570507	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6q24.2	GPR126	rs6570507-A	0.286	6E-11	(EA)	0.0245	[0.017-0.032] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1673	chr6	142679571	142679572	rs6570507	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6q24.2	GPR126	rs6570507-A	0.286	5E-7	(EA, men)	0.0268	[0.016-0.037] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1673	chr6	142679571	142679572	rs6570507	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6q24.2	GPR126	rs6570507-A	0.286	2E-6	(EA,women)	0.0233	[0.014-0.033] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1673	chr6	142679571	142679572	rs6570507	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	6q24.2	GPR126	rs6570507-A	0.38	2E-11		0.032	[0.02-0.044] unit decrease	Affymetrix, Illumina [2704730] (imputed)	N
1673	chr6	142679571	142679572	rs6570507	23666238	Kou I	2013-05-12	Nat Genet	Genetic variants in GPR126 are associated with adolescent idiopathic scoliosis.	Scoliosis	1,033 Japanese ancestry cases, 1,473 Japanese ancestry controls	1,529 East Asian ancestry cases, 25,675 East Asian ancestry controls, 447 European ancestry cases, 737 European ancestry controls	6q24.2	GPR126	rs6570507-?	0.43	4E-12	(East Asian)	1.26	[1.18-1.35]	Illumina [465762]	N
1673	chr6	142679571	142679572	rs6570507	23666238	Kou I	2013-05-12	Nat Genet	Genetic variants in GPR126 are associated with adolescent idiopathic scoliosis.	Scoliosis	1,033 Japanese ancestry cases, 1,473 Japanese ancestry controls	1,529 East Asian ancestry cases, 25,675 East Asian ancestry controls, 447 European ancestry cases, 737 European ancestry controls	6q24.2	GPR126	rs6570507-?	0.43	1E-14		1.27	[1.20-1.35]	Illumina [465762]	N
1673	chr6	142679571	142679572	rs6570507	20397748	Liu JZ	2010-04-01	Twin Res Hum Genet	Genome-wide association study of height and body mass index in Australian twin families.	Height	11,536 European ancestry individuals	NA	6q24.2	GPR126	rs6570507-G	0.71	2E-7		0.08	[0.04-0.12] SD increase	Illumina [559712] (imputed)	N
1673	chr6	142679571	142679572	rs6570507	19343178	Soranzo N	2009-04-03	PLoS Genet	Meta-analysis of genome-wide scans for human adult stature identifies novel Loci and associations with measures of skeletal frame size.	Height	12,611 European ancestry individuals	7,187 European ancestry individuals	6q24.2	GPR126	rs6570507-?	0.42	4E-11		0.08	[0.06-0.10] s.d. decrease	Illumina [229216]	N
1673	chr6	142688968	142688969	rs17280293	33909500	Moll M	2021-04-28	Am J Physiol Lung Cell Mol Physiol	A Systematic Analysis of Protein-altering Exonic Variants in Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease	up to 31,465 European ancestry cases, up to 203,688 European ancestry controls, up to 1,413 African ancestry cases, up to 6,080 African ancestry controls, up to 287 East Asian ancestry cases, up to 7,484 East Asian ancestry controls, up to 61 Hispanic cases, up to 613 Hispanic controls	NA	6q24.2	ADGRG6	rs17280293-A	0.97	8E-18		1.32	[1.24 -1.41]	Illumina [at least 109036]	N
1673	chr6	142688968	142688969	rs17280293	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q24.2	NR	rs17280293-G	0.0286804	4E-11				Affymetrix, Illumina [24653286] (imputed)	N
1673	chr6	142688968	142688969	rs17280293	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	6q24.2	ADGRG6	rs17280293-A	0.973	2E-38		0.0999	[0.085-0.115] unit decrease	Affymetrix [19819130] (imputed)	N
1673	chr6	142688968	142688969	rs17280293	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	6q24.2	ADGRG6	rs17280293-A	0.973	9E-22		0.0699	[0.056-0.084] unit increase	Affymetrix [19819130] (imputed)	N
1673	chr6	142688968	142688969	rs17280293	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	6q24.2	ADGRG6	rs17280293-A	0.973	2E-131		0.1803	[0.17-0.19] unit decrease	Affymetrix [19819130] (imputed)	N
1673	chr6	142688968	142688969	rs17280293	30049742	Terzikhan N	2018-07-26	Eur Respir J	Heritability and genome-wide association study of diffusing capacity of the lung.	Diffusing capacity of the lung for carbon monoxide traits	8,372 European ancestry individuals	NA	6q24.2	ADGRG6	rs17280293-A		1E-10	(DLCO per alveolar volume)	0.07	[0.048-0.092] unit decrease	Affymetrix, Illumina [NR]	N
1673	chr6	142689979	142689980	rs67116010	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6q24.2	GPR126	rs67116010-A	NR	1E-8		0.0451794	[0.03-0.061] unit decrease	Affymetrix [321016] (imputed)	N
1673	chr6	142691548	142691549	rs11155242	33909500	Moll M	2021-04-28	Am J Physiol Lung Cell Mol Physiol	A Systematic Analysis of Protein-altering Exonic Variants in Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease	up to 31,465 European ancestry cases, up to 203,688 European ancestry controls, up to 1,413 African ancestry cases, up to 6,080 African ancestry controls, up to 287 East Asian ancestry cases, up to 7,484 East Asian ancestry controls, up to 61 Hispanic cases, up to 613 Hispanic controls	NA	6q24.2	ADGRG6	rs11155242-A	0.81	6E-26		1.14	[1.11 -1.17]	Illumina [at least 109036]	N
1673	chr6	142701157	142701158	rs6909857	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	6q24.2		rs6909857-G	NR	2E-8		0.0098	[0.0065-0.0131] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
1673	chr6	142703482	142703483	rs6922607	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6q24.2	NR	rs6922607-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
1673	chr6	142703482	142703483	rs6922607	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	6q24.2		rs6922607-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1673	chr6	142703482	142703483	rs6922607	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	6q24.2	NA	rs6922607-A	0.808	2E-9		0.013	[0.0087-0.0173] unit decrease	NR [~ 27400000] (imputed)	N
1673	chr6	142703876	142703877	rs4896582	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6q24.2	GPR126	rs4896582-A	NR	7E-18		0.0266854	[0.021-0.033] unit decrease	Affymetrix [321114] (imputed)	N
1673	chr6	142703876	142703877	rs4896582	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	6q24.2	NR	rs4896582-?	NR	1E-6		0.03130236	[0.019-0.044] unit decrease	Illumina [34656550] (imputed)	N
1673	chr6	142703876	142703877	rs4896582	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6q24.2	GPR126	rs4896582-G	0.6960999999999999	9E-9	(EA, men)	0.0346	[0.023-0.046] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1673	chr6	142703876	142703877	rs4896582	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6q24.2	GPR126	rs4896582-G	0.6960999999999999	2E-6	(EA, women)	0.0252	[0.015-0.035] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1673	chr6	142703876	142703877	rs4896582	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6q24.2	GPR126	rs4896582-G	0.6960999999999999	1E-12	(EA)	0.0288	[0.021-0.037] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1673	chr6	142703876	142703877	rs4896582	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6q24.2	GPR126	rs4896582-G	0.675	9E-10	(men)	0.035	[0.024-0.046] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1673	chr6	142703876	142703877	rs4896582	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6q24.2	GPR126	rs4896582-G	0.675	1E-13		0.0284	[0.021-0.036] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1673	chr6	142703876	142703877	rs4896582	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in inactive individuals	561 African American women, 352 Filipino ancestry women, 725 Indian ancestry women, 19,288 European ancestry women, 251 African American men, 4,654 Indian ancestry men, 11,681 European ancestry men, 959 European ancestry individuals	1,437 African American women, 5,184 European ancestry women, 64 African American men, 5,416 European ancestry men	6q24.2	GPR126	rs4896582-G	0.6981999999999999	4E-7	(EA)	0.0416	[0.026-0.058] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1673	chr6	142703876	142703877	rs4896582	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in inactive individuals	561 African American women, 352 Filipino ancestry women, 725 Indian ancestry women, 19,288 European ancestry women, 251 African American men, 4,654 Indian ancestry men, 11,681 European ancestry men, 959 European ancestry individuals	1,437 African American women, 5,184 European ancestry women, 64 African American men, 5,416 European ancestry men	6q24.2	GPR126	rs4896582-G	0.6775	9E-8		0.0403	[0.026-0.055] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1673	chr6	142703876	142703877	rs4896582	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in inactive individuals	561 African American women, 352 Filipino ancestry women, 725 Indian ancestry women, 19,288 European ancestry women, 251 African American men, 4,654 Indian ancestry men, 11,681 European ancestry men, 959 European ancestry individuals	1,437 African American women, 5,184 European ancestry women, 64 African American men, 5,416 European ancestry men	6q24.2	GPR126	rs4896582-G	0.6606000000000001	7E-6	(women)	0.0531	[0.03-0.076] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1673	chr6	142703876	142703877	rs4896582	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6q24.2	GPR126	rs4896582-G	0.6981999999999999	9E-6	(EA, men)	0.0299	[0.017-0.043] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1673	chr6	142703876	142703877	rs4896582	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6q24.2	GPR126	rs4896582-G	0.6960999999999999	2E-8	(EA)	0.0261	[0.017-0.035] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1673	chr6	142703876	142703877	rs4896582	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6q24.2	GPR126	rs4896582-G	0.6921999999999999	2E-6	(men)	0.0311	[0.018-0.044] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1673	chr6	142703876	142703877	rs4896582	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6q24.2	GPR126	rs4896582-G	0.675	1E-8		0.0253	[0.016-0.034] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1673	chr6	142703876	142703877	rs4896582	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6q24.2	GPR126	rs4896582-?	0.6960999999999999	3E-13	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1673	chr6	142703876	142703877	rs4896582	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6q24.2	GPR126	rs4896582-?	0.6960999999999999	2E-6	(EA, women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1673	chr6	142703876	142703877	rs4896582	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6q24.2	GPR126	rs4896582-?	0.6960999999999999	1E-8	(EA, men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1673	chr6	142703876	142703877	rs4896582	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6q24.2	GPR126	rs4896582-?	0.675	7E-14				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1673	chr6	142703876	142703877	rs4896582	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6q24.2	GPR126	rs4896582-?	0.675	2E-9	(men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1673	chr6	142703876	142703877	rs4896582	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6q24.2	GPR126	rs4896582-?	0.675	2E-8	(women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1673	chr6	142703876	142703877	rs4896582	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	6q24.2	GPR126	rs4896582-A	0.299	3E-55		0.051	[0.045-0.057] unit decrease	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
1673	chr6	142703876	142703877	rs4896582	18391950	Lettre G	2008-04-06	Nat Genet	Identification of ten loci associated with height highlights new biological pathways in human growth.	Height	15,821 European ancestry individuals	Up to 17,801 European ancestry individuals	6q24.2	GPR126	rs4896582-A	0.27	2E-18		0.38	[0.28-0.48] cm decrease	Affymetrix, Illumina [2260683] (imputed)	N
1673	chr6	142707132	142707133	rs6937121	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6q24.2	ADGRG6	rs6937121-T	0.7032	1E-15		0.0588	[0.044-0.073] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1673	chr6	142713841	142713842	rs6570508	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	6q24.2	ADGRG6	rs6570508-A	0.3138	2E-7		0.0387	[0.024-0.053] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1673	chr6	142713841	142713842	rs6570508	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6q24.2	GPR126	rs6570508-G	0.6695	2E-8	(women)	0.0321	[0.021-0.043] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1673	chr6	142716285	142716286	rs6570509	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	6q24.2	ADGRG6	rs6570509-T	0.2868	1E-31		0.0244	[0.02-0.029] unit decrease	Affymetrix [18391927] (imputed)	N
1673	chr6	142716285	142716286	rs6570509	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	6q24.2	NR	rs6570509-?	NR	7E-7	(male)	0.19086	[0.12-0.27] unit decrease	Affymetrix [7794483] (imputed)	N
1673	chr6	142716285	142716286	rs6570509	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	6q24.2	NR	rs6570509-?	NR	2E-12		0.17104	[0.12-0.22] unit decrease	Affymetrix [7794483] (imputed)	N
1673	chr6	142716285	142716286	rs6570509	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	6q24.2	NR	rs6570509-?	NR	1E-7	(female)	0.14067	[0.088-0.193] unit decrease	Affymetrix [7794483] (imputed)	N
1673	chr6	142716285	142716286	rs6570509	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6q24.2	GPR126	rs6570509-T	0.2874	3E-16	(EA, women)	0.0423	[0.032-0.052] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1673	chr6	142716285	142716286	rs6570509	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6q24.2	GPR126	rs6570509-T	0.2874	2E-16	(EA,men)	0.0478	[0.036-0.059] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1673	chr6	142716285	142716286	rs6570509	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6q24.2	GPR126	rs6570509-T	0.2874	1E-29	(EA)	0.0453	[0.037-0.053] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1673	chr6	142724917	142724918	rs9496369	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6q24.2		rs9496369-?	NR	3E-217				NR [~ 8900000] (imputed)	N
1673	chr6	142731626	142731626	rs3835235	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	6q24.2		rs3835235-GT	NR	9E-24		0.0176	[0.014-0.021] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1673	chr6	142734203	142734204	rs962554	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	6q24.2	GPR126	rs962554-C	NR	3E-9		0.0211309	[0.014-0.028] unit decrease	Affymetrix [323858] (imputed)	N
1673	chr6	142734203	142734204	rs962554	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	6q24.2	GPR126	rs962554-T	0.715144	4E-9		0.01681	[0.011-0.022] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1674	chr6	142737503	142737504	rs2294764	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	6q24.2		rs2294764-A	NR	2E-8		0.01	[0.0065-0.0135] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
1674	chr6	142742658	142742659	rs6929442	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	6q24.2		rs6929442-C	0.38353	4E-10		0.0174821	[0.012-0.023] unit decrease	Illumina [13479924] (imputed)	N
1674	chr6	142745882	142745883	rs7753012	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6q24.2	NR	rs7753012-G	0.32	4E-20		0.85	[0.82-0.88]	Affymetrix [9886854] (imputed)	N
1674	chr6	142745882	142745883	rs7753012	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6q24.2	NR	rs7753012-G	0.32	2E-31			[NR]	Affymetrix [9886854] (imputed)	N
1674	chr6	142745882	142745883	rs7753012	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6q24.2	NR	rs7753012-G	0.32	1E-31		0.85	[0.83-0.88]	Affymetrix [9886854] (imputed)	N
1674	chr6	142745882	142745883	rs7753012	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6q24.2	NR	rs7753012-G	0.32	8E-33			[NR]	Affymetrix [9886854] (imputed)	N
1674	chr6	142745882	142745883	rs7753012	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in non-current smokers	16,488 European ancestry cases, 169,688 European ancestry controls	NA	6q24.2	NR	rs7753012-G	0.32	2E-31		0.85	[0.83-0.88]	Affymetrix [9886854] (imputed)	N
1674	chr6	142745882	142745883	rs7753012	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in never smokers	8,631 European ancestry cases, 120,544 European ancestry controls	NA	6q24.2	NR	rs7753012-G	0.32	8E-20		0.85	[0.82-0.88]	Affymetrix [9886854] (imputed)	N
1674	chr6	142745882	142745883	rs7753012	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in ever smokers	12,446 European ancestry cases, 59,145 European ancestry controls	NA	6q24.2	NR	rs7753012-G	0.32	4E-14		0.88	[0.86-0.91]	Affymetrix [9886854] (imputed)	N
1674	chr6	142745882	142745883	rs7753012	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	6q24.2	ADGRG6	rs7753012-T	0.6949	3E-43		0.0378	[0.033-0.043] unit decrease	Affymetrix [19819130] (imputed)	N
1674	chr6	142745882	142745883	rs7753012	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	6q24.2	ADGRG6	rs7753012-T	0.6949	5E-165		0.0712	[0.066-0.076] unit decrease	Affymetrix [19819130] (imputed)	N
1674	chr6	142745882	142745883	rs7753012	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	6q24.2	ADGRG6	rs7753012-T	0.6949	7E-23		0.0251	[0.02-0.03] unit decrease	Affymetrix [19819130] (imputed)	N
1674	chr6	142745882	142745883	rs7753012	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	6q24.2		rs7753012-?	NR	8E-227				NR [~ 8900000] (imputed)	N
1674	chr6	142745882	142745883	rs7753012	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	Height	19,965 British ancestry individuals from 6863 families.	NA	6q24.2	GPR126	rs7753012-G	0.3072	8E-14		0.0054543535	[0.004-0.0069] m decrease	Illumina [24111857] (imputed)	N
1674	chr6	142745882	142745883	rs7753012	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FEV1/FVC)	48,943 European ancestry individuals	57,176 European ancestry individuals, 38,199 individuals.	6q24.2	LOC153910, GPR126	rs7753012-G	0.3018	2E-31		0.084	[0.07-0.098] unit increase	Affymetrix [27624732] (imputed)	N
1674	chr6	142745882	142745883	rs7753012	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FEV1)	48,943 European ancestry individuals.	57,176 European ancestry individuals, 38,199 individuals.	6q24.2	LOC153910, GPR126	rs7753012-G	0.3	2E-10		0.046	[0.032-0.06] unit increase	Affymetrix [up to 27624732] (imputed)	N
1674	chr6	142749662	142749663	rs13215906	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6q24.2	GPR126	rs13215906-C	NR	9E-9		0.0499116	[0.033-0.067] unit decrease	Affymetrix [323123] (imputed)	N
1674	chr6	142750515	142750516	rs3817928	29394082	Burkart KM	2018-02-02	Am J Respir Crit Care Med	A Genome-wide Association Study in Hispanics/Latinos Identifies Novel Signals for Lung Function. The Hispanic Community Health Study/Study of Latinos.	Lung function (FEV1/FVC)	11,822 Hispanic individuals	up to 4,162 Hispanic individuals, up to 876 African American individuals, up to 94,612 European ancestry individuals	6q24.2	Intergenic	rs3817928-A		1E-7		0.54	[NR] unit decrease	Illumina [2232944] (imputed)	N
1674	chr6	142750515	142750516	rs3817928	23284291	Hancock DB	2012-12-20	PLoS Genet	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (smoking interaction)	50,047 European ancestry individuals	NA	6q24.2	GPR126	rs3817928-?	NR	3E-12	(FEV1/FVC, Pack-years)			NR [~ 2500000] (imputed)	N
1674	chr6	142750515	142750516	rs3817928	20010835	Hancock DB	2009-12-13	Nat Genet	Meta-analyses of genome-wide association studies identify multiple loci associated with pulmonary function.	Pulmonary function	20,890 European ancestry individuals	16,178 European ancestry individuals	6q24.2	GPR126	rs3817928-A	0.78	1E-9	(FEV1/FVC)	0.42	[NR] % decrease	Affymetrix, Illumina [2534500] (imputed)	N
1674	chr6	142753337	142753338	rs1329705	22837378	Wilk JB	2012-07-26	Am J Respir Crit Care Med	Genome-wide association studies identify CHRNA5/3 and HTR4 in the development of airflow obstruction.	Airflow obstruction	up to 3,368 European ancestry cases, up to 29,507 European ancestry controls	331 European ancestry cases, 2,550 European ancestry controls	6q24.2	GPR126	rs1329705-?	0.8	3E-6	(FEV1 65%)	1.27		Affymetrix, Illumina [up to 2500000] (imputed)	N
1674	chr6	142767632	142767633	rs3748069	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	6q24.2	NR	rs3748069-?	NR	4E-8		0.03184678	[0.021-0.043] unit decrease	Illumina [34656550] (imputed)	N
1674	chr6	142767632	142767633	rs3748069	18391951	Gudbjartsson DF	2008-04-06	Nat Genet	Many sequence variants affecting diversity of adult human height.	Height	30,968 European ancestry individuals	8,541 European ancestry individuals	6q24.2	GPR126	rs3748069-A	0.74	5E-14		6.5	[5.44-9.36] % s.d. increase	Affymetrix, Illumina [up to 304226]	N
1674	chr6	142773503	142773504	rs12529186	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6q24.2	NR	rs12529186-?	NR	4E-10				Affymetrix [~ 8270000] (imputed)	N
1674	chr6	142794020	142794021	rs4637667	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6q24.2	GPR126	rs4637667-A	NR	5E-49		0.0456226	[0.04-0.052] unit decrease	Affymetrix [321016] (imputed)	N
1674	chr6	142794020	142794021	rs4637667	26211971	Ogura Y	2015-07-23	Am J Hum Genet	A Functional SNP in BNC2 Is Associated with Adolescent Idiopathic Scoliosis.	Adolescent idiopathic scoliosis	2,109 Japanese ancestry cases, 11,140 Japanese ancestry controls	2,223 East Asian ancestry cases, 4,724 East Asian ancestry controls	6q24.2	GPR126	rs4637667-A	0.342	3E-9		1.24	[1.16-1.34]	Illumina [4420789] (imputed)	N
1674	chr6	142797288	142797289	rs7763064	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	6q24.2	NR	rs7763064-?	NR	1E-7		0.03058944	[0.019-0.042] unit decrease	Illumina [34656550] (imputed)	N
1674	chr6	142797288	142797289	rs7763064	25281659	van der Valk RJ	2014-10-03	Hum Mol Genet	A novel common variant in DCST2 is associated with length in early life and height in adulthood.	Birth length	28,459 European ancestry individuals	16,145 European ancestry individuals, 280 Moroccan ancestry individuals, 284 Surinamese ancestry individuals, 319 Turkish ancestry individuals, 651 Chinese ancestry individuals	6q24.2	GPR126	rs7763064-A	0.288	6E-6		0.044	[0.024-0.064] unit decrease	Affymetrix, Illumina [2201971] (imputed)	N
1674	chr6	142797288	142797289	rs7763064	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	6q24.2	GPR126	rs7763064-A	0.29	1E-33		0.048	[NR] unit decrease	Affymetrix, Illumina [2834208] (imputed)	N
1674	chr6	142800757	142800758	rs9321870	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6q24.2	GPR126	rs9321870-A	NR	3E-13		0.0254855	[0.019-0.032] unit decrease	Affymetrix [321114] (imputed)	N
1674	chr6	142800757	142800758	rs9321870	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6q24.2	NR	rs9321870-A	0.211637	9E-10		0.0165175	[0.011-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1674	chr6	142814990	142814991	rs9403391	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	6q24.2		rs9403391-T	0.031492	1E-9		0.038192116	[0.026-0.051] unit decrease	Affymetrix [93095623] (imputed)	N
1674	chr6	142814990	142814991	rs9403391	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	6q24.2	NR	rs9403391-T	0.031664	2E-10		0.033818	[0.023-0.044] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
1674	chr6	142814990	142814991	rs9403391	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	6q24.2	ADGRG6	rs9403391-C	0.97	4E-19	(conditional on rs9399401)	1.32	[NR]	Affymetrix, Illumina [6224355] (imputed)	N
1674	chr6	142822216	142822217	rs9496398	21507922	Ramsuran V	2011-05-01	Clin Infect Dis	Duffy-null-associated low neutrophil counts influence HIV-1 susceptibility in high-risk South African black women.	Neutrophil count	115 African ancestry HIV-negative individuals	NA	6q24.2	AL161904.1, RP11-440G9.1	rs9496398-?	NR	4E-6				Illumina [874956]	N
1674	chr6	142834079	142834080	rs149160483	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6q24.2	RP11-440G9.1	rs149160483-G	NR	4E-9		0.0404592	[0.027-0.054] unit decrease	Affymetrix [321016] (imputed)	N
1674	chr6	142836853	142836854	rs145743542	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	6q24.2		rs145743542-?	NR	3E-12				NR [~ 8900000] (imputed)	N
1674	chr6	142838172	142838173	rs148274477	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	6q24.2		rs148274477-?	NR	1E-20				NR [~ 8900000] (imputed)	N
1674	chr6	142838172	142838173	rs148274477	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FEV1/FVC)	48,943 European ancestry individuals	57,176 European ancestry individuals, 38,199 individuals.	6q24.2	GPR126	rs148274477-T	0.0263	4E-17		0.175	[0.13-0.22] unit increase	Affymetrix [27624732] (imputed)	N
1674	chr6	142838172	142838173	rs148274477	26635082	Soler Artigas M	2015-12-04	Nat Commun	Sixteen new lung function signals identified through 1000 Genomes Project reference panel imputation.	Lung function (FEV1/FVC)	38,199 European ancestry adults	54,550 European ancestry adults, 5,062 children	6q24.2	GPR126, RP11-440G9.1	rs148274477-C	NR	1E-25	(adults)	0.162	[0.13-0.19] unit decrease	Affymetrix, Illumina [8694268] (imputed)	N
1674	chr6	142838354	142838355	rs262125	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6q24.2	RP11-440G9.1	rs262125-T	NR	4E-24		0.0398435	[0.032-0.048] unit decrease	Affymetrix [323123] (imputed)	N
1674	chr6	142853485	142853486	rs262130	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6q24.2	RP11-440G9.1	rs262130-T	NR	4E-28		0.0395118	[0.032-0.047] unit decrease	Affymetrix [321016] (imputed)	N
1674	chr6	142854023	142854024	rs1467720	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6q24.2	RP11-440G9.1	rs1467720-G	NR	5E-14		0.0347264	[0.026-0.044] unit decrease	Affymetrix [321016] (imputed)	N
1674	chr6	142861490	142861491	rs263186	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	6q24.2	RP11-440G9.1	rs263186-G	NR	8E-10		0.0198283	[0.014-0.026] unit decrease	Affymetrix [321788] (imputed)	N
1674	chr6	142863887	142863888	rs263179	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	Height	19,965 British ancestry individuals from 6863 families.	NA	6q24.2	NR	rs263179-C	0.293173	8E-12		0.005117665	[0.0037-0.0066] m decrease	Illumina [24111857] (imputed)	N
1675	chr6	142868896	142868897	rs263175	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6q24.2	RP11-440G9.1	rs263175-T	NR	2E-13		0.0258264	[0.019-0.033] unit decrease	Affymetrix [323123] (imputed)	N
1675	chr6	142869349	142869350	rs263173	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6q24.2	RP11-440G9.1	rs263173-G	NR	3E-13		0.035986	[0.026-0.046] unit decrease	Affymetrix [321016] (imputed)	N
1675	chr6	142873649	142873650	rs263169	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6q24.2	RP11-440G9.1	rs263169-C	NR	2E-13		0.0289629	[0.021-0.037] unit decrease	Affymetrix [321016] (imputed)	N
1675	chr6	142873649	142873650	rs263169	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6q24.2	RP11-440G9.1	rs263169-C	NR	1E-13		0.0319361	[0.023-0.04] unit decrease	Affymetrix [323123] (imputed)	N
1675	chr6	142907514	142907515	rs263156	26105758	Adhikari K	2015-06-24	Nat Commun	A genome-wide association study identifies multiple loci for variation in human ear morphology.	Lobe size	4,919 Latin American individuals	NA	6q24.2	GPR126, LOC153910	rs263156-C	0.67	3E-13		0.109	unit increase	Illumina [671038]	N
1675	chr6	142907514	142907515	rs263156	26105758	Adhikari K	2015-06-24	Nat Commun	A genome-wide association study identifies multiple loci for variation in human ear morphology.	Lobe attachment	4,919 Latin American individuals	NA	6q24.2	LOC153910, GPR126	rs263156-C	0.67	2E-6				Illumina [671038]	N
1675	chr6	142907514	142907515	rs263156	26105758	Adhikari K	2015-06-24	Nat Commun	A genome-wide association study identifies multiple loci for variation in human ear morphology.	Ear morphology	4,919 Latin American individuals	NA	6q24.2	LOC153910, GPR126	rs263156-C	0.67	5E-9				Illumina [671038]	N
1675	chr6	142921275	142921276	rs58122955	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater scored)	1791 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	6q24.2	ADGRG6, GPR126	rs58122955-?	NR	2E-7	(Hispanic)	0.06684	[0.042-0.092] unit increase	Illumina [at least 7383741] (imputed)	N
1675	chr6	142921275	142921276	rs58122955	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater scored)	1791 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	6q24.2	ADGRG6	rs58122955-?	NR	2E-14				Illumina [at least 7383741] (imputed)	N
1675	chr6	142924285	142924286	rs166399	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6q24.2	RP11-440G9.1	rs166399-A	NR	2E-10		0.0188082	[0.013-0.025] unit decrease	Affymetrix [321016] (imputed)	N
1675	chr6	142949497	142949497	rs146775494	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6q24.2	RP11-440G9.1	rs146775494-CATG	NR	8E-9		0.0224745	[0.015-0.03] unit decrease	Affymetrix [321016] (imputed)	N
1675	chr6	142949497	142949497	rs146775494	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6q24.2	RP11-440G9.1	rs146775494-CATG	NR	3E-11		0.0283625	[0.02-0.037] unit decrease	Affymetrix [323123] (imputed)	N
1675	chr6	142953956	142953957	rs263137	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	6q24.2	NR	rs263137-?	NR	4E-9	(male)	0.21919	[0.15-0.29] unit decrease	Affymetrix [7794483] (imputed)	N
1675	chr6	142953956	142953957	rs263137	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	6q24.2	NR	rs263137-?	NR	3E-9		0.14023	[0.094-0.186] unit decrease	Affymetrix [7794483] (imputed)	N
1675	chr6	142957167	142957168	rs264042	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6q24.2	RP11-440G9.1	rs264042-A	NR	7E-12		0.0368982	[0.026-0.047] unit decrease	Affymetrix [323123] (imputed)	N
1675	chr6	142959944	142959945	rs28514730	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	6q24.2	NR	rs28514730-?	NR	8E-94	(EA)	0.299572	[0.27-0.33] unit increase (23&Me)	Illumina [at least 7383741] (imputed)	N
1675	chr6	142959944	142959945	rs28514730	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	6q24.2	ADGRG6, GPR126	rs28514730-?	NR	2E-104				Illumina [at least 7383741] (imputed)	N
1675	chr6	142959944	142959945	rs28514730	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater scored)	1791 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	6q24.2	NR	rs28514730-?	NR	6E-8	(EA)	0.1229	[0.27-0.33] unit increase	Illumina [at least 7383741] (imputed)	N
1675	chr6	142966079	142966080	rs6902754	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6q24.2	RP11-440G9.1	rs6902754-A	NR	3E-18		0.0278827	[0.022-0.034] unit decrease	Affymetrix [323123] (imputed)	N
1675	chr6	142967848	142967849	rs63337561	29346644	Yan Q	2018-01-15	Hum Mol Genet	Genome-wide Analysis of Disease Progression in Age-related Macular Degeneration.	Disease progression in age-related macular degeneration (adjusted for baseline)	1,105 progressed eyes and 3,912 non-progressed eyes from 2,721 European ancestry individuals	NA	6q24.2	LOC153910	rs63337561-G	0.11	2E-6		1.41		Illumina [8974355] (imputed)	N
1675	chr6	142972916	142972917	rs7740440	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Prepulse inhibition of the startle response	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	6q24.2	ZNF281	rs7740440-A	NR	3E-6		5.236442	[3.05-7.42] unit increase	Illumina [> 6200000] (imputed)	N
1675	chr6	142976755	142976756	rs1334585	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Depression	at least 5,919 European ancestry cases, at least 130,691 European ancestry controls	634,037 European ancestry cases, 1,308,690 European ancestry controls	6q24.2	RP11, 440G9.1	rs1334585-C	0.4801	8E-14		0.01672344	[0.012-0.022] unit decrease	NR [9417325] (imputed)	N
1675	chr6	142987460	142987461	rs1848750	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Major depressive disorder (MTAG)	at least 170,756 European ancestry cases, at least 329,443 European ancestry controls	NA	6q24.2	NR	rs1848750-T	0.516	6E-9		0.023959395	[0.016-0.032] unit decrease	NR [NR]	N
1675	chr6	142987758	142987759	rs12190702	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6q24.2	RP11-440G9.1	rs12190702-T	NR	1E-9		0.0414946	[0.028-0.055] unit decrease	Affymetrix [321016] (imputed)	N
1675	chr6	142993344	142993345	rs189972056	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	6q24.2		rs189972056-?	NR	1E-22				NR [~ 8900000] (imputed)	N
1675	chr6	142996617	142996618	rs2876520	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	6q24.2		rs2876520-?	NR	1E-10		0.0191	unit decrease	NR [NR]	N
1675	chr6	142996617	142996618	rs2876520	30718901	Howard DM	2019-02-04	Nat Neurosci	Genome-wide meta-analysis of depression identifies 102 independent variants and highlights the importance of the prefrontal brain regions.	Depression	118,811 European ancestry cases, 327,427 European ancestry controls, 127,552 cases, 233,763 controls	414,055 European ancestry cases, 892,299 European ancestry controls	6q24.2	NR	rs2876520-G	0.4729	3E-17		1.0193679	[1.01-1.02]	NR [8098588] (imputed)	N
1675	chr6	142996617	142996618	rs2876520	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	6q24.2	NR	rs2876520-G	0.473727080467068	4E-8		0.0050419574	[0.0032-0.0068] unit increase	NR [NR]	N
1675	chr6	142996617	142996618	rs2876520	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6q24.2	NR	rs2876520-G	0.4665	2E-7		0.0062	[0.0038-0.0086] unit increase	NR [7666894] (imputed)	N
1675	chr6	142997131	142997132	rs1027896	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	6q24.2	NR	rs1027896-?	NR	6E-6	(AA)	20.58	[18.38-22.78]	Illumina [905956]	N
1675	chr6	142997201	142997202	rs75819156	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6q24.2	RP11-440G9.1	rs75819156-A	NR	2E-9		0.0552291	[0.037-0.073] unit decrease	Affymetrix [323123] (imputed)	N
1676	chr6	143006705	143006706	rs2328370	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6q24.2	RP11-440G9.1	rs2328370-A	NR	8E-12		0.0212572	[0.015-0.027] unit decrease	Affymetrix [323123] (imputed)	N
1676	chr6	143006705	143006706	rs2328370	32959083	Adewuyi EO	2020-09-21	Hum Genet	Genetic analysis of endometriosis and depression identifies shared loci and implicates causal links with gastric mucosa abnormality.	Endometriosis or depression (pleiotropy)	17,054 endometriosis cases, 170,756 European ancestry depression cases, 191,858 controls, 329,443 European ancestry controls	NA	6q24.2	NR	rs2328370-A		3E-8		0.0231486	[0.015-0.031] unit increase	NR [6694342]	N
1676	chr6	143029873	143029874	rs12530022	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6q24.2		rs12530022-?	NR	4E-10				NR [~ 8900000] (imputed)	N
1676	chr6	143032520	143032521	rs533183	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	6q24.2		rs533183-T	NR	2E-9		0.0521	[0.035-0.069] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1676	chr6	143033055	143033056	rs9390019	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6q24.2	RP1-67K17.3	rs9390019-C	NR	3E-8		0.018834	[0.012-0.026] unit decrease	Affymetrix [321016] (imputed)	N
1676	chr6	143033055	143033056	rs9390019	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6q24.2	RP1-67K17.3	rs9390019-C	NR	3E-9		0.0221277	[0.015-0.029] unit decrease	Affymetrix [323123] (imputed)	N
1676	chr6	143033055	143033056	rs9390019	31097437	Plotnikov D	2019-05-16	Br J Ophthalmol	Association between birth weight and refractive error in adulthood: a Mendelian randomisation study.	Birth weight	188,039 European ancestry individuals	NA	6q24.2	NR	rs9390019-T	0.22	3E-9		0.023	[0.015-0.031] z score increase	Affymetrix [up to 10400000] (imputed)	N
1676	chr6	143056555	143056556	rs9390022	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	6q24.2	NR	rs9390022-C	0.3361	5E-14		0.0306	[0.023-0.039] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1676	chr6	143056555	143056556	rs9390022	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	6q24.2	HIVEP2	rs9390022-T	0.8	6E-9		1.05	[1.03-1.07]	Affymetrix, Illumina [11800000] (imputed)	N
1676	chr6	143062215	143062216	rs67447472	31168069	Ward J	2019-06-05	Mol Psychiatry	The genomic basis of mood instability: identification of 46 loci in 363,705 UK Biobank participants, genetic correlation with psychiatric disorders, and association with gene expression and function.	Mood instability	157,039 European ancestry cases, 206,666 European ancestry controls	NA	6q24.2	HIVEP2	rs67447472-?	NR	4E-9		0.0114171	[0.0076-0.0152] unit decrease	Affymetrix [NR] (imputed)	N
1676	chr6	143062215	143062216	rs67447472	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Experiencing mood swings	373,733 European ancestry individuals	NA	6q24.2	NR	rs67447472-T	0.104156	1E-10		6.46	z score increase	NR [10847151] (imputed)	N
1676	chr6	143069314	143069315	rs197482	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	6q24.2	NR	rs197482-C	0.6162	3E-10		0.0298	[0.021-0.039] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1676	chr6	143070504	143070505	rs197480	24556642	Zeng Z	2014-02-18	Caries Res	Genome-wide association study of primary dentition pit-and-fissure and smooth surface caries.	Pit-and-Fissure caries	979 European ancestry individuals	NA	6q24.2	HIVEP2	rs197480-T	0.0394	4E-6		1.428	[NR] unit increase	Illumina [1216074] (imputed)	N
1676	chr6	143073040	143073041	rs3383	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 29,0641 European ancestry controls	NA	6q24.2	RP1-67K17.3	rs3383-T	0.365922	2E-8		0.06797136	[0.044-0.092] unit decrease	Affymetrix [7288503] (imputed)	N
1676	chr6	143073040	143073041	rs3383	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Type 2 diabetes	approximately 459,000 European ancestry individuals	NA	6q24.2		rs3383-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1676	chr6	143076542	143076543	rs12524093	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	6q24.2	NR	rs12524093-?	NR	1E-8				Illumina [at least 7383741] (imputed)	N
1676	chr6	143119831	143119832	rs12211360	24105470	Wu Y	2013-10-14	Hum Mol Genet	A meta-analysis of genome-wide association studies for adiponectin levels in East Asians identifies a novel locus near WDR11-FGFR2.	Adiponectin levels	7,827 East Asian ancestry individuals	10,252 East Asian ancestry individuals	6q24.2	HIVEP2	rs12211360-A	0.966	6E-6		0.16	[0.10-0.22] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1677	chr6	143140652	143140653	rs7763660	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6q24.2		rs7763660-?	NR	6E-11				NR [~ 8900000] (imputed)	N
1677	chr6	143142312	143142313	rs9791312	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	6q24.2	HIVEP2	rs9791312-C	0.349802	1E-9		0.014179421	[0.0096-0.0187] unit increase	Affymetrix [93095623] (imputed)	N
1677	chr6	143144957	143144958	rs2328386	32119686	Dahlin A	2020-03-02	PLoS One	Genome-wide interaction study reveals age-dependent determinants of responsiveness to inhaled corticosteroids in individuals with asthma.	Adverse response to inhaled corticosteroid treatment x age interaction in asthma	407 European ancestry cases, 376 European ancestry controls	287 European ancestry cases, 251 European ancestry controls	6q24.2	HIVEP2	rs2328386-C	NR	5E-8		3.030303	[1.82-5]	Affymetrix, Illumina [8589102] (imputed)	N
1677	chr6	143150042	143150043	rs9373363	34187846	Ong JS	2021-06-29	Gut	Multitrait genetic association analysis identifies 50 new risk loci for gastro-oesophageal reflux, seven new loci for Barrett's oesophagus and provides insights into clinical heterogeneity in reflux diagnosis.	Gastroesophageal reflux disease	129,080 European ancestry cases, 473,524 European ancestry controls	462,753 cases, 1,127,474 controls	6q24.2	HIVEP2	rs9373363-A	0.75	4E-9		0.033	unit increase	NR [2324712] (imputed)	N
1677	chr6	143150042	143150043	rs9373363	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6q24.2		rs9373363-A	0.7485	6E-12		0.0111	[0.008-0.0142] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1677	chr6	143150042	143150043	rs9373363	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6q24.2	Intergenic	rs9373363-A	0.7485	6E-12	(MTAG)	0.0104	[0.0075-0.0133] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1677	chr6	143152085	143152086	rs198663	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	6q24.2		rs198663-?	NR	2E-15				NR [~ 8900000] (imputed)	N
1677	chr6	143153250	143153251	rs62430703	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	6q24.2		rs62430703-A	NR	2E-9		0.0184	[0.012-0.024] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1677	chr6	143154885	143154886	rs198665	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	6q24.2	NA	rs198665-A	0.3911	5E-13		0.0122	[0.0089-0.0155] unit increase	NR [~ 27400000] (imputed)	N
1677	chr6	143156362	143156363	rs198645	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	6q24.2	NR	rs198645-A	0.254473	2E-8		0.04494716	[0.029-0.061] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1677	chr6	143165202	143165203	rs12203103	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6q24.2	NR	rs12203103-?	NR	8E-9				Affymetrix [~ 8270000] (imputed)	N
1677	chr6	143169722	143169723	rs7758383	32128391	Klaric L	2020-02-19	Sci Adv	Glycosylation of immunoglobulin G is regulated by a large network of genes pleiotropic with inflammatory diseases.	IgG N-glycosylation phenotypes (multivariate analysis)	8,090 European ancestry individuals	2,388 European ancestry individuals	6q24.2	HIVEP2	rs7758383-A	0.521	1E-13		0.125	[NR] unit increase	Illumina [up to 741151] (imputed)	N
1677	chr6	143170971	143170972	rs972119	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	6q24.2		rs972119-G	NR	4E-10		0.0465	[0.032-0.061] unit decrease	Affymetrix, Illumina [25845091] (imputed)	N
1677	chr6	143180725	143180726	rs62430713	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	6q24.2		rs62430713-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1677	chr6	143183595	143183596	rs2184364	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	6q24.2	NR	rs2184364-?		3E-9		0.0156396	[0.01-0.021] unit increase	Affymetrix [19400418] (imputed)	N
1677	chr6	143185682	143185683	rs765875	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6q24.2	NR	rs765875-?	NR	1E-10				Affymetrix [~ 8270000] (imputed)	N
1677	chr6	143185682	143185683	rs765875	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	6q24.2		rs765875-?	NR	9E-11				NR [~ 8900000] (imputed)	N
1677	chr6	143185682	143185683	rs765875	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	6q24.2	NA	rs765875-T	0.4689	1E-14		0.0132	[0.0099-0.0165] unit decrease	NR [~ 27400000] (imputed)	N
1677	chr6	143185890	143185891	rs765876	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	6q24.2	HIVEP2	rs765876-A	0.5238	5E-7		0.0345	[0.021-0.048] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1677	chr6	143186572	143186573	rs5880552	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	6q24.2		rs5880552-G	NR	1E-8		0.0133	[0.0088-0.0178] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1677	chr6	143193343	143193344	rs9390025	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Diastolic blood pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	6q24.2	chr6mb143	rs9390025-C	0.303969989	4E-6		0.1375	[0.079-0.196] unit increase	Affymetrix [~ 9800000] (imputed)	N
1677	chr6	143193970	143193971	rs72995085	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	6q24.2	NR	rs72995085-C	0.1772	4E-11		0.02147882	[0.015-0.028] unit decrease	Affymetrix [10549349] (imputed)	N
1677	chr6	143194087	143194088	rs79032349	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	6q24.2	HIVEP2	rs79032349-T	0.958	3E-6		1.17457	[1.11-1.24]	NR [9372253] (imputed)	N
1677	chr6	143208837	143208838	rs12213441	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		6q24.2	HIVEP2	rs12213441-C	0.770897	3E-10		0.0105064	[0.0072-0.0138] unit decrease	Affymetrix [12370749]	N
1677	chr6	143214828	143214829	rs12205042	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Daytime sleep phenotypes	874 European ancestry individuals	NA	6q24.2	HIVEP2, AIG1	rs12205042-C	NR	1E-6	(daytime resting duration, weekdays)	0.1122	[0.067-0.157] unit increase	Affymetrix [7141204] (imputed)	N
1677	chr6	143222769	143222770	rs13190880	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	6q24.2	HIVEP2	rs13190880-T	0.09	2E-9				NR [> 9500000] (imputed)	N
1677	chr6	143224509	143224510	rs9390030	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q24.2	NR	rs9390030-T	0.0965915	4E-11				Affymetrix, Illumina [19872809] (imputed)	N
1677	chr6	143224509	143224510	rs9390030	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	6q24.2	NR	rs9390030-T	0.094493	3E-13		0.024767	[0.018-0.031] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
1677	chr6	143225844	143225845	rs9390032	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	6q24.2		rs9390032-?	NR	8E-12				NR [~ 8900000] (imputed)	N
1677	chr6	143225903	143225904	rs9390033	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6q24.2	HIVEP2	rs9390033-G	0.0947170000000001	3E-9		0.022271615	[0.015-0.03] unit increase	Affymetrix [93095623] (imputed)	N
1677	chr6	143227411	143227412	rs4896604	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	6q24.2	HIVEP2	rs4896604-A	0.557	1E-6		0.031	[0.019-0.043] unit decrease	Affymetrix [7947838] (imputed)	N
1677	chr6	143234505	143234506	rs9376716	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	6q24.2	HIVEP2	rs9376716-G	0.094493	3E-9		0.022477338	[0.015-0.03] unit increase	Affymetrix [93095623] (imputed)	N
1677	chr6	143244294	143244295	rs113243210	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	6q24.2	NR	rs113243210-T	NR	1E-9		0.021	[0.014-0.028] unit decrease	Affymetrix [9000000] (imputed)	N
1677	chr6	143247160	143247161	rs62428831	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	6q24.2		rs62428831-C	NR	1E-10		0.0214	[0.015-0.028] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
1677	chr6	143247160	143247161	rs62428831	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	6q24.2	HIVEP2	rs62428831-T	0.858454	1E-10		0.0177819	[0.012-0.023] unit decrease	Affymetrix [NR] (imputed)	N
1677	chr6	143259681	143259682	rs12154082	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6q24.2		rs12154082-?	NR	5E-14				NR [~ 8900000] (imputed)	N
1677	chr6	143260599	143260600	rs6940880	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	6q24.2	HIVEP2	rs6940880-A	0.205229	3E-13		0.020339768	[0.015-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1678	chr6	143267519	143267520	rs79874964	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	6q24.2	RP11-439L18.2	rs79874964-C	0.205983	2E-12		0.019661902	[0.014-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1678	chr6	143267519	143267520	rs79874964	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q24.2	NR	rs79874964-G	0.799599	4E-16				Affymetrix, Illumina [17210439] (imputed)	N
1678	chr6	143267519	143267520	rs79874964	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	6q24.2	NR	rs79874964-G	0.793747	2E-18		0.020916	[0.016-0.026] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1678	chr6	143304347	143304348	rs112057733	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin I concentration	1,606 African American individuals	NA	6q24.2		rs112057733-?	NR	5E-6		0.24	[0.14-0.34] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1678	chr6	143310246	143310247	rs57083985	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Perceived intensity of glucose	1,757 European ancestry twins	NA	6q24.2	RP11-439L18.3	rs57083985-T	0.68	6E-6		0.17	[0.092-0.248] unit increase	Illumina [4381914] (imputed)	N
1678	chr6	143329122	143329123	rs199256	30898391	Lawrenson K	2019-03-19	Gynecol Oncol	Genome-wide association studies identify susceptibility loci for epithelial ovarian cancer in east Asian women.	Epithelial ovarian cancer	3,238 East Asian ancestry cases, 4,083 East Asian ancestry controls	NA	6q24.2		rs199256-?	NR	8E-6	(mucinous_all)	1.52		Illumina [11595112] (imputed)	N
1678	chr6	143359068	143359069	rs12664685	30456811	Moss LC	2018-11-19	Genet Epidemiol	Using Bayes model averaging to leverage both gene main effects and G x  E interactions to identify genomic regions in genome-wide association studies.	Asthma x Hispanic interaction (2df)	606 Hispanic cases, 792 Hispanic controls, 643 European ancestry cases, 959 European ancestry controls	NA	6q24.2	NR	rs12664685-?	NR	2E-7				NR [6212909] (imputed)	N
1678	chr6	143362752	143362753	rs75796365	24951543	Liao J	2014-06-20	Hum Mol Genet	Meta-analysis of genome-wide association studies in multiethnic Asians identifies two loci for age-related nuclear cataract.	Age-related nuclear cataracts	2,369 Malay ancestry individuals, 2,200 Indian ancestry individuals, 2,571 Chinese ancestry individuals	NA	6q24.2	LOC100507489	rs75796365-C	NR	3E-6	(Fixed effect)	0.13	[0.071-0.189] unit decrease	Illumina [4736131] (imputed)	N
1679	chr6	143478487	143478488	rs2328454	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	6q24.2		rs2328454-A	NR	4E-8		0.0124	[0.0081-0.0167] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
1680	chr6	143592385	143592386	rs1570350	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta minimum area	35,110 individuals	NA	6q24.2		rs1570350-A	0.555226	2E-12		0.0491009	[0.035-0.063] decrease	Affymetrix [NR]	N
1680	chr6	143592385	143592386	rs1570350	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	6q24.2		rs1570350-G	NR	3E-18		0.0174	[0.013-0.021] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
1680	chr6	143592385	143592386	rs1570350	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	6q24.2	AIG1	rs1570350-A		7E-15		0.201	unit increase	Affymetrix [at least 2696785] (imputed)	N
1680	chr6	143593003	143593003	rs5880559	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta maximum area	31,908 individuals	NA	6q24.2		rs5880559-A	0.55527	2E-13		0.0549607	[0.04-0.07] decrease	Affymetrix [NR]	N
1680	chr6	143608967	143608968	rs6907215	30510157	Franceschini N	2018-12-03	Nat Commun	GWAS and colocalization analyses implicate carotid intima-media thickness and carotid plaque loci in cardiovascular outcomes.	Carotid intima media thickness	Up to 71,128 European ancestry individuals	NA	6q24.2	AIG1	rs6907215-T	0.6	5E-8		0.004	[0.0026-0.0054] unit decrease	Affymetrix, Illumina [9574088] (imputed)	N
1680	chr6	143634663	143634664	rs9373387	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	6q24.2	AIG1	rs9373387-G	0.6348	5E-12		0.1856	[0.13-0.24] mmHg decrease	Affymetrix [NR] (imputed)	N
1680	chr6	143651968	143651969	rs9403484	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	6q24.2	NR	rs9403484-T	NR	6E-6		1.06	[NR]	Illumina [7158791] (imputed)	N
1681	chr6	143659011	143659012	rs6901152	22076464	Ellinghaus E	2011-11-11	Leukemia	Identification of germline susceptibility loci in ETV6-RUNX1-rearranged childhood acute lymphoblastic leukemia.	Acute lymphoblastic leukemia (childhood)	419 European ancestry ETV6-RUNX1 positive cases, 474 European ancestry controls	951 European ancestry ETV6-RUNX1 positive cases, 326 European ancestry ETV6-RUNX1 negative cases, 3,061 European ancestry controls	6q24.2	AIG1	rs6901152-T	0.43	5E-6	(ETV6-RUNX1 positive, Northern European)			Affymetrix [355750]	N
1681	chr6	143704673	143704674	rs223604	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Inguinal hernia	16,725 European ancestry cases, 428,356 European ancestry controls, 1,664 East Asian ancestry cases, 177,062 East Asian ancestry controls	NA	6q24.2		rs223604-T	NR	2E-13		0.0884	[0.065-0.112] unit increase	Affymetrix, Illumina [25841416] (imputed)	N
1681	chr6	143704673	143704674	rs223604	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6q24.2		rs223604-?	NR	6E-13				NR [~ 8900000] (imputed)	N
1681	chr6	143733575	143733576	rs2496589	25117820	Schneider BP	2014-08-12	Br J Cancer	Genetic variant predicts bevacizumab-induced hypertension in ECOG-5103 and ECOG-2100.	Response to chemotherapy in breast cancer hypertensive cases (cumulative dose) (bevacizumab)	255 European ancestry cases, 387 European ancestry controls		6q24.2	intergenic	rs2496589-?	NR	5E-6		1.7	[NR]	Illumina [up to 810372] (imputed)	N
1681	chr6	143751624	143751625	rs9496623	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	6q24.2	ADAT2	rs9496623-G	0.2672	3E-8		1.0237783		Affymetrix [11880941] (imputed)	N
1681	chr6	143767556	143767557	rs9496638	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6q24.2	Intergenic	rs9496638-A	0.7065	2E-8	(MTAG)	0.0081	[0.0054-0.0108] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1681	chr6	143779147	143779148	rs3804540	31522824	Liu Y	2019-09-06	J Dermatol Sci	Genome-wide scan identified genetic variants associated with skin aging in a Chinese female population.	Skin aging measurement	1,084 Han Chinese ancestry women (>50 years old)	964 European ancestry women	6q24.2	PEX3	rs3804540-?	0.04	5E-9	(Additive, size of pigmented spots on forehead, East Asian)	0.6	NR unit increase	Illumina [6328611] (imputed)	N
1682	chr6	143825103	143825104	rs11155297	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SULT4A1	5,365 Icelandic ancestry individuals	NA	6q24.2		rs11155297-T	0.2586	4E-23		0.215544	[0.17-0.26] unit decrease	Illumina [7506463] (imputed)	N
1682	chr6	143825103	143825104	rs11155297	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RBM19	5,367 Icelandic ancestry individuals	NA	6q24.2		rs11155297-T	0.2586	1E-20		0.204106	[0.16-0.25] unit decrease	Illumina [7506463] (imputed)	N
1682	chr6	143863991	143863992	rs9390103	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	6q24.2	NR	rs9390103-?	NR	2E-8				Affymetrix [NR]	N
1682	chr6	143865220	143865221	rs6911131	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	6q24.2	FUCA2	rs6911131-G	NR	1E-10		1.121202	NR	Affymetrix, Illumina [8278136] (imputed)	N
1682	chr6	143865220	143865221	rs6911131	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (positive Marder score)	1,390 European ancestry cases	NA	6q24.2		rs6911131-A	NR	5E-6	(GLM)	1.9021	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
1682	chr6	143865220	143865221	rs6911131	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (positive Marder score)	1,390 European ancestry cases	NA	6q24.2		rs6911131-?	NR	7E-6	(MLM)	0.3302258	[0.19-0.47] unit increase	Illumina [~ 9000000] (imputed)	N
1682	chr6	143889240	143889241	rs1416208	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Perceived sweetness of sucrose	686 European ancestry twins	NA	6q24.2	PHACTR2	rs1416208-T	0.39	2E-6		0.57	[0.33-0.81] unit increase	Illumina [5833901] (imputed)	N
1682	chr6	143890038	143890039	rs10979	25108383	Geller F	2014-08-10	Nat Genet	Genome-wide association analyses identify variants in developmental genes associated with hypospadias.	Hypospadias	1,006 European ancestry male child cases, 2,390 European ancestry male child controls, 3,096 European ancestry female child controls	1,972 European ancestry male child cases, 1,401 European ancestry male child controls, 405 European ancestry female child controls, 6 European ancestry child controls	6q24.2	RP11-436I24.1	rs10979-A	0.669	1E-6		1.1943	[NR]	Illumina [8207076] (imputed)	N
1682	chr6	143898893	143898894	rs12199775	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	6q24.2	NR	rs12199775-A	0.93	4E-7	(EA)	1.1094881		Affymetrix, Illumina [~ 9000000] (imputed)	N
1682	chr6	143898893	143898894	rs12199775	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	6q24.2	NR	rs12199775-A	0.93	5E-6	(EA)	1.1207099	[1.07-1.17]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1682	chr6	143898893	143898894	rs12199775	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	6q24.2	PHACTR2	rs12199775-A	0.929	2E-8		1.129	[1.066-1.195]	Affymetrix, Illumina [1230000] (imputed)	N
1682	chr6	143916590	143916591	rs191867719	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Angina pectoris	30,025 European ancestry cases, 440,906 European ancestry controls, 14,007 East Asian ancestry cases, 145,158 East Asian ancestry controls	NA	6q24.2		rs191867719-T	NR	3E-8		0.7987	[0.51-1.08] unit increase	Affymetrix, Illumina [25842036] (imputed)	N
1683	chr6	143925419	143925420	rs17072813	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	6q24.2	NR	rs17072813-?	NR	9E-6				Affymetrix [NR]	N
1683	chr6	143943313	143943314	rs9390123	23108145	Wang LE	2012-10-29	Cancer Res	Genome-wide association study reveals novel genetic determinants of DNA repair capacity in lung cancer.	Lung Cancer (DNA repair capacity)	914 European ancestry non-small cell lung cancer cases, 860 European ancestry controls	679 European ancestry ancestry non-small cell lung cancer cases, 695 European ancestry controls	6q24.2	PHACTR2	rs9390123-A	0.3957	7E-6				Illumina [303669]	N
1683	chr6	143950825	143950826	rs9496715	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	6q24.2	NR	rs9496715-?	NR	4E-6		735.52045	NR unit increase	Illumina [2379855]	N
1683	chr6	143993069	143993070	rs7772565	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	6q24.2	NR	rs7772565-?	NR	2E-13				Affymetrix [NR]	N
1683	chr6	143994198	143994199	rs9403521	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6q24.2	PHACTR2	rs9403521-G	0.172	8E-6	(Height z-score change )	0.03	[NR] SD/y increase	Illumina [899892]	N
1683	chr6	144020899	144020900	rs9496739	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	6q24.2		rs9496739-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1683	chr6	144034268	144034269	rs7738738	34590679	Pott J	2021-09-30	Hum Mol Genet	Meta-GWAS of PCSK9 levels detects two novel loci at APOB and TM6SF2.	PCSK9 levels	10,186 European ancestry statin-free individuals	300 African American statin-free individuals	6q24.2		rs7738738-T	0.111812251816218	8E-7	(EA)	0.037432	[0.023-0.052] unit increase	Affymetrix, Illumina [8700000] (imputed)	N
1684	chr6	144079853	144079854	rs6931865	22704111	Hotaling JM	2012-06-13	J Urol	Pilot genome-wide association search identifies potential loci for risk of erectile dysfunction in type 1 diabetes using the DCCT/EDIC study cohort.	Erectile dysfunction in type 1 diabetes	125 European ancestry cases, 403 European ancestry controls	NA	6q24.2	PHACTR2	rs6931865-A	0.336	4E-6				Illumina [840354]	N
1684	chr6	144081608	144081609	rs2073214	25886283	Chang X	2015-04-17	PLoS One	Genome-wide association study of serum minerals levels in children of different ethnic background.	Magnesium levels	2,317 European ancestry children, 1,283 African American ancestry children	NA	6q24.2	NR	rs2073214-T	NR	8E-6	(EA)	0.03512	(-0.05049--0.01974) mg/dl decrease	Illumina [up to 509150]	N
1684	chr6	144092904	144092905	rs10080355	30796134	Soderholm M	2019-02-22	Neurology	Genome-wide association meta-analysis of functional outcome after ischemic stroke.	3-month functional outcome in non-lacunar ischaemic stroke (modified Rankin score)	3,991 European and unknown ancestry individuals	NA	6q24.2	PHACTR2	rs10080355-C	0.37	2E-6		1.46	[1.31-1.61]	Affymetrix, Illumina [~ 8500000] (imputed)	N
1684	chr6	144139850	144139851	rs13204629	28394258	Wild PS	2017-04-10	J Clin Invest	Large-scale genome-wide analysis identifies genetic variants associated with cardiac structure and function.	Left atrial antero-posterior diameter	30,201 European ancestry individuals	NA	6q24.2	NR	rs13204629-A	0.8742	7E-6		0.0347	[0.02-0.05] unit increase	Affymetrix, Illumina [at least 283291] (imputed)	N
1684	chr6	144160279	144160280	rs9386051	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 2, vertical position of orbits relative to midface)	2,187 European ancestry individuals	NA	6q24.2	NR	rs9386051-C	0.3388	1E-6		0.154	[0.092-0.216] unit decrease	Illumina [10677593] (imputed)	N
1685	chr6	144224311	144224312	rs9484827	31296530	Trendowski MR	2019-07-11	Clin Cancer Res	Clinical and Genome-Wide Analysis of Serum Platinum Levels after Cisplatin-Based Chemotherapy.	Serum platinum levels after completion of cisplatin chemotherapy	866 European ancestry individuals, 17 non-European ancestry individuals, 127 individuals	NR	6q24.2	NR	rs9484827-G	0.0133	2E-6		0.5719	[0.34-0.81] unit increase	Illumina [7305641] (imputed)	N
1685	chr6	144235909	144235910	rs141200037	30694715	Sakornsakolpat P	2019-01-29	Am J Respir Cell Mol Biol	Genome-Wide Association Analysis of Single Breath Diffusing Capacity of Carbon Monoxide (DLCO).	Diffusing capacity of carbon monoxide	2,584 European ancestry individuals with chronic obstructive pulmonary disease, 3,002 European ancestry healthy individuals, 343 African American individuals with chronic obstructive pulmonary disease, 1,006 African American healthy individuals	NA	6q24.2	ZC2HC1B, AIG1	rs141200037-T	0.02	4E-6	(African American)	0.69	0.4-0.98 unit decrease	Illumina [NR] (imputed)	N
1685	chr6	144245610	144245611	rs9484829	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	6q24.2		rs9484829-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1685	chr6	144270000	144270001	rs2064495	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	6q24.2		rs2064495-?	NR	6E-10				NR [~ 8900000] (imputed)	N
1685	chr6	144273922	144273923	rs150612539	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	6q24.2	PLAGL1	rs150612539-C	1.0	2E-6	(AA)	0.441	unit increase	Illumina [NR] (imputed)	N
1685	chr6	144298199	144298200	rs6900923	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6q24.2	NR	rs6900923-C	NR	1E-6				Affymetrix [~ 8270000] (imputed)	N
1685	chr6	144298199	144298200	rs6900923	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	6q24.2	NR	rs6900923-C	NR	4E-6				Affymetrix [~ 8270000] (imputed)	N
1685	chr6	144298199	144298200	rs6900923	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Adult onset asthma and/or BMI	33,418 European ancestry cases, 393,186 European ancestry controls, 31,218 European ancestry individuals	NA	6q24.2	NR	rs6900923-C	NR	5E-10				Affymetrix [~ 8270000] (imputed)	N
1685	chr6	144301525	144301526	rs71024882	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Testosterone levels	310,461 European ancestry individuals, 5,453 African ancestry individuals, 6,680 South Asian ancestry individuals	NA	6q24.2	NR	rs71024882-G	NR	3E-9		0.0165	[0.011-0.022] unit increase	Affymetrix [9000000] (imputed)	N
1686	chr6	144315218	144315219	rs6928827	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Anti-saccade response	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	6q24.2	PLAGL1	rs6928827-A	0.1263	9E-6	(EA)			Illumina [4404269] (imputed)	N
1686	chr6	144318528	144318529	rs9399469	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	6q24.2	NR	rs9399469-A	0.622027	3E-14		0.0198083	[0.015-0.025] unit increase	Affymetrix [16585745] (imputed)	N
1686	chr6	144337344	144337345	rs2103888	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		PLAGL1	rs2103888-?	NR	4E-11	(female)	0.72902	[NR] unit increase	Affymetrix [NR] (imputed)	N
1686	chr6	144346192	144346193	rs150029151	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	6q24.2	PLAGL1	rs150029151-A	1.0	2E-6	(AA)	0.432	unit increase	Illumina [NR] (imputed)	N
1686	chr6	144354118	144354119	rs77691416	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Resistin levels	21,758 European ancestry individuals	9,173 individuals	6q24.2		rs77691416-A	0.91	8E-17		0.1151	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1686	chr6	144356036	144356037	rs17073303	29489655	Liu X	2018-03-01	Medicine (Baltimore)	Genome-wide association study of maternal genetic effects and parent-of-origin effects on food allergy.	Peanut allergy (maternal genetic effects)	301 European ancestry complete and incomplete trios	NA	6q24.2	PLAGL1	rs17073303-?	NR	9E-6				Illumina [NR]	N
1686	chr6	144371264	144371265	rs12525521	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	6q24.2	PLAGL1	rs12525521-A	0.095189	4E-10		0.023577286	[0.016-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
1686	chr6	144373692	144373693	rs192748541	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	6q24.2	PLAGL1	rs192748541-A	1.0	1E-6	(AA)	0.434	unit increase	Illumina [NR] (imputed)	N
1686	chr6	144375816	144375816	rs11373039	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	6q24.2	PLAGL1	rs11373039-AG	0.082789	1E-12		0.028627379	[0.021-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
1686	chr6	144385776	144385777	rs149110519	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	6q24.2		rs149110519-T	NR	2E-33		0.0754	[0.063-0.088] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
1686	chr6	144385776	144385777	rs149110519	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	6q24.2	PLAGL1	rs149110519-T	0.03568	4E-34		0.07297152	[0.061-0.085] unit decrease	Affymetrix [93095623] (imputed)	N
1686	chr6	144385776	144385777	rs149110519	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	6q24.2	PLAGL1	rs149110519-T	0.035667	5E-66		0.10335902	[0.092-0.115] unit increase	Affymetrix [93095623] (imputed)	N
1686	chr6	144385776	144385777	rs149110519	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	6q24.2	PLAGL1	rs149110519-T	0.035669	2E-39		0.07904903	[0.067-0.091] unit increase	Affymetrix [93095623] (imputed)	N
1686	chr6	144385776	144385777	rs149110519	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	6q24.2	PLAGL1	rs149110519-T	0.03569	4E-13		0.043554757	[0.032-0.055] unit increase	Affymetrix [93095623] (imputed)	N
1686	chr6	144385776	144385777	rs149110519	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q24.2	NR	rs149110519-T	0.0345892	7E-46				Affymetrix, Illumina [23467995] (imputed)	N
1686	chr6	144385776	144385777	rs149110519	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	6q24.2	NR	rs149110519-T	0.036036	2E-48		0.074605	[0.065-0.085] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
1686	chr6	144385776	144385777	rs149110519	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	6q24.2	PLAGL1	rs149110519-T	0.0349	5E-17		0.08266498	[0.063-0.102] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1686	chr6	144385776	144385777	rs149110519	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	6q24.2	PLAGL1	rs149110519-T	0.0349	2E-9		0.05902827	[0.04-0.078] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1686	chr6	144385776	144385777	rs149110519	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	6q24.2	PLAGL1	rs149110519-T	0.0349	2E-29		0.110864	[0.092-0.13] unit increase	Affymetrix [~ 2500000] (imputed)	N
1686	chr6	144385776	144385777	rs149110519	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	6q24.2	PLAGL1	rs149110519-T	0.0349	3E-16		0.08070002	[0.061-0.1] unit increase	Affymetrix [~ 2500000] (imputed)	N
1686	chr6	144385776	144385777	rs149110519	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	6q24.2	PLAGL1	rs149110519-T	0.0349	5E-30		0.1123782	[0.093-0.132] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1686	chr6	144385776	144385777	rs149110519	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	6q24.2	PLAGL1	rs149110519-T	0.0349	2E-9		0.05976161	[0.04-0.079] unit increase	Affymetrix [~ 2500000] (imputed)	N
1686	chr6	144389938	144389939	rs76996465	27976721	Wang Z	2016-12-15	Nat Commun	A large-scale genome-wide association and meta-analysis identified four novel susceptibility loci for leprosy.	Leprosy	2,743 Chinese ancestry cases, 3,573 Chinese ancestry controls	5,413 Han Chinese ancestry cases, 12,037 Han Chinese ancestry controls	6q24.2	NR	rs76996465-T	NR	2E-6		1.165		Illumina [5546030] (imputed)	N
1686	chr6	144411337	144411338	rs73008259	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	6q24.2		rs73008259-A	NR	2E-10		0.0359	[0.025-0.047] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
1686	chr6	144411337	144411338	rs73008259	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Resistin levels	21,758 European ancestry individuals	9,173 individuals	6q24.2		rs73008259-A	0.053	1E-35		0.2214	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1687	chr6	144441670	144441671	rs72992130	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	6q24.2	AL031390.1	rs72992130-T	0.0453519999999999	8E-17		0.04470563	[0.034-0.055] unit decrease	Affymetrix [93095623] (imputed)	N
1687	chr6	144441670	144441671	rs72992130	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	6q24.2	AL031390.1	rs72992130-T	0.04536	5E-17		0.045044705	[0.035-0.056] unit increase	Affymetrix [93095623] (imputed)	N
1687	chr6	144441670	144441671	rs72992130	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6q24.2	AL031390.1	rs72992130-T	0.045354	7E-12		0.036802124	[0.026-0.047] unit increase	Affymetrix [93095623] (imputed)	N
1687	chr6	144441670	144441671	rs72992130	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q24.2	NR	rs72992130-T	0.0435343	3E-20				Affymetrix, Illumina [23114412] (imputed)	N
1687	chr6	144441670	144441671	rs72992130	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	6q24.2	NR	rs72992130-T	0.045397	2E-23		0.046913	[0.038-0.056] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
1687	chr6	144441670	144441671	rs72992130	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q24.2	NR	rs72992130-T	0.0437808	2E-10				Affymetrix, Illumina [19872809] (imputed)	N
1687	chr6	144441670	144441671	rs72992130	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	6q24.2	NR	rs72992130-T	0.04562	8E-13		0.034569	[0.025-0.044] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
1687	chr6	144441670	144441671	rs72992130	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	6q24.2		rs72992130-?	NR	3E-10				NR [~ 8900000] (imputed)	N
1687	chr6	144459960	144459961	rs6910108	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	6q24.2	NR	rs6910108-?	NR	3E-6				Affymetrix [NR]	N
1687	chr6	144477136	144477137	rs183435045	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	6q24.2	STX11	rs183435045-C	NR	2E-6	(AA)			Illumina [up to 11995908] (imputed)	N
1687	chr6	144479461	144479462	rs7755842	31219150	Ekenberg C	2019-06-13	J Infect Dis	Single nucleotide polymorphisms in HLA alleles are associated with HIV-1 viral load in demographically diverse, ART-naive participants from the START trial.	Pre-treatment viral load in HIV-1 infection	1,398 European ancestry individuals, 572 Black individuals, 418 Hispanic individuals, 13 Asian ancestry individuals, 39 individuals	NA	6q24.2	STX11	rs7755842-T	0.082	2E-17		0.36	[0.28-0.44] unit decrease	Affymetrix [339439]	N
1687	chr6	144486283	144486284	rs80298718	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 11, projection of the nose)	2,187 European ancestry individuals	NA	6q24.2	NR	rs80298718-C	0.04564	1E-6		0.3453	[0.21-0.48] unit decrease	Illumina [10677593] (imputed)	N
1688	chr6	144587182	144587183	rs2064196	30487263	Pollack S	2018-11-28	Diabetes	Multiethnic Genome-wide Association Study of Diabetic Retinopathy using Liability Threshold Modeling of Duration of Diabetes and Glycemic Control.	Proliferative diabetic retinopathy (vs no DR)	398 European ancestry cases, 1,970 European ancestry controls, 1,097 African American cases, 941 African American controls	1,354 East Asian ancestry cases, 1130 East Asian ancestry controls, 801 European ancestry cases, 2,880 European ancestry controls, 232 Hispanic cases, 1,048 Hispanic controls	6q24.2	NR	rs2064196-?	NR	1E-6	(AA)	1.8181818	[NR]	Affymetrix, Illumina [NR] (imputed)	N
1688	chr6	144619170	144619171	rs4896712	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	6q24.2		rs4896712-C	NR	9E-9		0.0183	[0.012-0.025] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
1688	chr6	144620687	144620688	rs2473140	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	6q24.2	NR	rs2473140-C	0.09043199999999996	7E-10		0.0292103	[0.02-0.039] unit increase	Affymetrix [16580851] (imputed)	N
1689	chr6	144723063	144723064	rs118176693	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		UTRN	rs118176693-?	NR	8E-10	(female)	0.495474	[NR] unit increase	Affymetrix [NR] (imputed)	N
1689	chr6	144749358	144749359	rs6570628	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		UTRN	rs6570628-?	NR	3E-10	(female)	1.56872	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1689	chr6	144749358	144749359	rs6570628	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA		UTRN	rs6570628-G	0.12	1E-7	(AA)	21.77	[20.2-23.34]	Illumina [905956]	N
1690	chr6	144859508	144859509	rs9386072	34380480	Liu J	2021-08-12	BMC Med	Genome-wide association study followed by trans-ancestry meta-analysis identify 17 new risk loci for schizophrenia.	Schizophrenia	3,493 Han Chinese ancestry cases, 4,709 Han Chinese ancestry controls	NA	6q24.2		rs9386072-A	NR	6E-6		0.86		Illumina [3937527] (imputed)	N
1690	chr6	144859508	144859509	rs9386072	34380480	Liu J	2021-08-12	BMC Med	Genome-wide association study followed by trans-ancestry meta-analysis identify 17 new risk loci for schizophrenia.	Schizophrenia	26,271 East Asian ancestry cases, 40,071 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	6q24.2		rs9386072-A	NR	1E-8		0.93		Illumina [NR] (imputed)	N
1690	chr6	144859508	144859509	rs9386072	34380480	Liu J	2021-08-12	BMC Med	Genome-wide association study followed by trans-ancestry meta-analysis identify 17 new risk loci for schizophrenia.	Schizophrenia	26,271 East Asian ancestry cases, 40,071 East Asian ancestry controls	NA	6q24.2		rs9386072-A	NR	5E-8		0.92		Illumina [NR] (imputed)	N
1690	chr6	144862997	144862998	rs2876586	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	6q24.2	NR	rs2876586-A	0.405	2E-8		0.00617405	[0.004-0.0083] unit increase	NR [9732723] (imputed)	N
1690	chr6	144871712	144871713	rs7738842	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	6q24.2		rs7738842-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1690	chr6	144880957	144880958	rs1358433	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	6q24.2		rs1358433-G	0.603	3E-12		0.008	[0.006-0.01] unit decrease	NR [NR] (imputed)	N
1690	chr6	144950022	144950023	rs9497026	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	6q24.2	UTRN	rs9497026-?		6E-10				Affymetrix, Illumina [NR] (imputed)	N
1691	chr6	144987162	144987163	rs4530873	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	6q24.2	NR	rs4530873-?	NR	5E-41				Affymetrix [NR]	N
1691	chr6	145019737	145019738	rs11155372	29559929	Amare AT	2018-03-06	Front Psychiatry	Association of the Polygenic Scores for Personality Traits and Response to Selective Serotonin Reuptake Inhibitors in Patients with Major Depressive Disorder.	Remission after SSRI treatment in MDD or openness	865 individuals with SSRI response data, 260,861 individuals with personality trait data	NA	6q24.2	UTRN	rs11155372-T	NR	1E-7				NR [NR] (imputed)	N
1691	chr6	145024121	145024122	rs4895650	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	6q24.2	Intergenic	rs4895650-T	0.5381	2E-8	(MTAG)	0.0093	[0.006-0.0126] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1691	chr6	145024121	145024122	rs4895650	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6q24.2		rs4895650-T	0.5472	5E-11		0.0093	[0.0066-0.012] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1691	chr6	145024121	145024122	rs4895650	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6q24.2	Intergenic	rs4895650-T	0.5472	2E-11	(MTAG)	0.0089	[0.0064-0.0114] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1691	chr6	145030283	145030284	rs9321987	29559929	Amare AT	2018-03-06	Front Psychiatry	Association of the Polygenic Scores for Personality Traits and Response to Selective Serotonin Reuptake Inhibitors in Patients with Major Depressive Disorder.	Response to SSRI in MDD or openness	865 individuals with SSRI response data, 260,861 individuals with personality trait data	NA	6q24.2	UTRN	rs9321987-A	NR	5E-7				NR [NR] (imputed)	N
1692	chr6	145105353	145105354	rs6926377	33830993	Johnston KJA	2021-04-08	PLoS Genet	Sex-stratified genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	387,649 British ancestry individuals	NA	6q24.2	UTRN	rs6926377-?	NR	7E-9			[NR]	NR [NR] (imputed)	N
1692	chr6	145105353	145105354	rs6926377	31194737	Johnston KJA	2019-06-13	PLoS Genet	Genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	387,649 British ancestry individuals	NA	6q24.2	UTRN	rs6926377-A	0.294	8E-9		0.0155	[0.01-0.021] unit decrease	NR [NR]	N
1692	chr6	145114934	145114935	rs4243475	32918390	Lin GY	2020-09-12	Ann Clin Transl Neurol	Association of genetic variants in migraineurs with and without restless legs syndrome.	Restless legs syndrome in migraine without aura	27 Taiwanese ancestry cases, 142 Taiwanese ancestry controls	NA	6q24.2	UTRN	rs4243475-A	0.07394	1E-7		6.083	NR	Affymetrix [710525]	N
1692	chr6	145185641	145185642	rs9399510	26242244	Ma Y	2015-08-05	Sci Rep	Association of chromosome 5q21.3 polymorphisms with the exploratory eye movement dysfunction in schizophrenia.	Exploratory eye movement dysfunction in schizophrenia (mean eye scanning length)	128 Han Chinese ancestry cases	NA	6q24.2	NR	rs9399510-?		3E-6		7.765	[4.67-10.86] unit decrease	Illumina [498648]	N
1693	chr6	145230308	145230309	rs62438851	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	RANTES levels	3,421 Finnish ancestry individuals	NA	6q24.2	NR	rs62438851-G		2E-6		0.1957	[0.11-0.28] SD units increase	NR [10700000] (imputed)	N
1693	chr6	145257392	145257393	rs13216871	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	6q24.2	UTRN	rs13216871-A	0.883828	4E-8		0.0174813	[0.011-0.024] unit increase	NR [16516521] (imputed)	N
1693	chr6	145284715	145284716	rs6917204	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	6q24.2	Intergenic	rs6917204-T	0.783	1E-8	(MTAG)	0.0114	[0.0075-0.0153] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1693	chr6	145284715	145284716	rs6917204	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6q24.2		rs6917204-T	0.7951	8E-12		0.0119	[0.0086-0.0152] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1693	chr6	145284715	145284716	rs6917204	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6q24.2	Intergenic	rs6917204-T	0.7951	1E-12	(MTAG)	0.0116	[0.0085-0.0147] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1693	chr6	145286367	145286368	rs1856416	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	6q24.2		rs1856416-C	0.798	2E-12		0.01	[0.008-0.012] unit decrease	NR [NR] (imputed)	N
1693	chr6	145346891	145346892	rs77774742	27629369	Gao J	2016-09-15	Neuropsychopharmacology	Genome-Wide Association Study of Loneliness Demonstrates a Role for Common Variation.	Loneliness (multivariate analysis)	8,490 European ancestry individuals, 1,228 African American individuals, 867 Hispanic American individuals, 175 individuals	NA	6q24.2	UTRN, EPM2A	rs77774742-?	NR	2E-6	(EA)			Illumina [7205781] (imputed)	N
1694	chr6	145392003	145392004	rs75772549	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6q24.2	NR	rs75772549-T	0.01045	5E-11	(HBD)	5.917	NR unit increase	Illumina [1671387] (imputed)	N
1694	chr6	145392003	145392004	rs75772549	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6q24.2	NR	rs75772549-T	0.01045	1E-9	(HBG1)	17.53	NR unit increase	Illumina [1671387] (imputed)	N
1694	chr6	145404254	145404255	rs114633080	29229094	Condreay L	2017-10-26	Respir Med	No genetic association detected with mepolizumab efficacy in severe asthma.	Response to mepolizumab in severe asthma	820 European ancestry individuals	NA	6q24.2	UTRN, EPM2A	rs114633080-?	NR	1E-6				Affymetrix, Illumina [NR] (imputed)	N
1694	chr6	145419948	145419949	rs113367288	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Lateral ventricle temporal horn volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	6q24.2	NR	rs113367288-?		7E-6				Illumina [4322238] (imputed)	N
1694	chr6	145423990	145423991	rs76566749	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6q24.3	NR	rs76566749-C	0.01045	8E-10	(SBDS)	0.06826	NR unit increase	Illumina [1671387] (imputed)	N
1694	chr6	145423990	145423991	rs76566749	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6q24.3	NR	rs76566749-C	0.01045	2E-8	(SHMT2)	0.7498	NR unit increase	Illumina [1671387] (imputed)	N
1694	chr6	145444115	145444116	rs148562661	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-17 levels	7,760 Finnish ancestry individuals	NA	6q24.3	NR	rs148562661-G		1E-6		0.2128	[0.13-0.3] SD units decrease	NR [10700000] (imputed)	N
1695	chr6	145561086	145561087	rs118117575	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-17 levels	7,760 Finnish ancestry individuals	NA	6q24.3	NR	rs118117575-G		3E-6		0.2178	[0.13-0.31] SD units decrease	NR [10700000] (imputed)	N
1695	chr6	145592271	145592272	rs528418	28115739	Smith AH	2017-01-24	Mol Psychiatry	Genome-wide association study of therapeutic opioid dosing identifies a novel locus upstream of OPRM1.	Methadone dose in opioid dependence	1,027 European American cases, 383 African American cases	NA	6q24.3	EPM2A	rs528418-G	0.09246892950391639	7E-6	(AA)	0.583	[0.33-0.84] unit increase	Illumina [at least 988306] (imputed)	N
1695	chr6	145614251	145614252	rs476358	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Lateral occipital cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	6q24.3	NR	rs476358-?		1E-6				Illumina [4322238] (imputed)	N
1696	chr6	145623920	145623921	rs552965	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6q24.3		rs552965-A	0.8926	9E-13	(conditional-joint)	0.0162	[0.012-0.021] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1696	chr6	145626207	145626208	rs9386110	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6q24.3		rs9386110-T	0.8917	6E-13		0.0163	[0.012-0.021] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1696	chr6	145634440	145634441	rs79556505	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	6q24.3		rs79556505-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1696	chr6	145634440	145634441	rs79556505	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6q24.3	Intergenic	rs79556505-T	0.8969	8E-12	(MTAG)	0.0147	[0.01-0.019] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1696	chr6	145688337	145688338	rs13215785	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-17 levels	7,760 Finnish ancestry individuals	NA	6q24.3	NR	rs13215785-G		6E-6		0.2058	[0.12-0.3] SD units increase	NR [10700000] (imputed)	N
1697	chr6	145781740	145781741	rs1355146	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	6q24.3		rs1355146-?	NR	7E-9				NR [~ 8900000] (imputed)	N
1697	chr6	145812370	145812371	rs375873	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	6q24.3	NR	rs375873-?	NR	4E-52				Illumina [at least 7383741] (imputed)	N
1698	chr6	145894032	145894033	rs187987903	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-17 levels	7,760 Finnish ancestry individuals	NA	6q24.3	NR	rs187987903-G		4E-6		0.2074	[0.12-0.3] SD units increase	NR [10700000] (imputed)	N
1698	chr6	145967876	145967877	rs1292335	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	6q24.3	NR	rs1292335-?	NR	2E-48				Illumina [at least 7383741] (imputed)	N
1698	chr6	145994857	145994858	rs80133860	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	6q24.3	EPM2A	rs80133860-T	0.0322	8E-9		0.06135084	[0.041-0.082] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1698	chr6	146007411	146007412	rs137852915	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Epithelial ovarian cancer	1,112 White British ancestry cases, 147,944 White British ancestry controls	NA	6q24.3		rs137852915-?	NR	4E-6		41.4303	[39.85-43.01]	NR [666300]	N
1698	chr6	146009136	146009137	rs117128711	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	6q24.3	EPM2A	rs117128711-T	0.033502	7E-17		0.052548096	[0.04-0.065] unit decrease	Affymetrix [93095623] (imputed)	N
1698	chr6	146009136	146009137	rs117128711	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	6q24.3	NR	rs117128711-C	0.966531	1E-21		0.051831	[0.041-0.062] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1699	chr6	146066915	146066916	rs181003626	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6q24.3	NR	rs181003626-T	0.01394	2E-9	(TAT)	0.09394	NR unit increase	Illumina [1671387] (imputed)	N
1699	chr6	146142076	146142077	rs182530774	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-17 levels	7,760 Finnish ancestry individuals	NA	6q24.3	NR	rs182530774-G		4E-6		0.2079	[0.12-0.3] SD units decrease	NR [10700000] (imputed)	N
1699	chr6	146143496	146143497	rs118046355	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q24.3	NR	rs118046355-T	0.966749	3E-20				Affymetrix, Illumina [17210439] (imputed)	N
1700	chr6	146159459	146159460	rs6570726	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	6q24.3	NR	rs6570726-?	NR	2E-47				Illumina [at least 7383741] (imputed)	N
1700	chr6	146180973	146180974	rs6930181	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	6q24.3	LOC100507557	rs6930181-A	0.537617	2E-11		0.0123741	[0.0088-0.016] unit increase	NR [13737936] (imputed)	N
1701	chr6	146286619	146286620	rs56181683	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6q24.3		rs56181683-?	NR	2E-14				NR [~ 8900000] (imputed)	N
1701	chr6	146302683	146302684	rs11155449	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	6q24.3		rs11155449-G	NR	4E-10		0.0082	[0.0057-0.0107] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1701	chr6	146318609	146318609	rs111487747	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	6q24.3	intergenic	rs111487747-A	0.5882	1E-24		0.0201	[0.016-0.024] unit increase	Affymetrix [18391927] (imputed)	N
1701	chr6	146345045	146345046	rs2814864	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	6q24.3	NR	rs2814864-?	NR	8E-42				Illumina [at least 7383741] (imputed)	N
1702	chr6	146446354	146446355	rs7772486	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	6q24.3	NR	rs7772486-?	NR	1E-37				Illumina [at least 7383741] (imputed)	N
1702	chr6	146479407	146479408	rs6913400	31476763	Otsuka I	2019-09-02	Neuropsychopharmacology	Genome-wide association studies identify polygenic effects for completed suicide in the Japanese population.	Suicide	746 Japanese ancestry cases, 14,049 Japanese ancestry controls	NA	6q24.3	GRM1	rs6913400-C	NR	4E-7		1.6	[1.33-1.91]	Illumina [8625325] (imputed)	N
1702	chr6	146515587	146515588	rs35548402	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-17 levels	7,760 Finnish ancestry individuals	NA	6q24.3	NR	rs35548402-G		8E-6		0.1993	[0.11-0.29] SD units decrease	NR [10700000] (imputed)	N
1702	chr6	146515911	146515912	rs17075725	29212154	Lin E	2017-09-16	Oncotarget	Detection of susceptibility loci on APOA5 and COLEC12 associated with metabolic syndrome using a genome-wide association study in a Taiwanese population.	Waist circumference	1,811 Taiwanese Han Chinese individuals with metabolic syndrome, 8,489 Taiwanese Han Chinese ancestry individuals without metabolic syndrome	NA	6q24.3	GRM1	rs17075725-?	NR	1E-6	(additive)	2.469	[1.46-3.47] unit increase	Affymetrix [583469]	N
1702	chr6	146535714	146535715	rs9497486	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Cathepsin L1 levels	21,758 European ancestry individuals	9,173 individuals	6q24.3		rs9497486-T	0.073	1E-9		0.1099	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1703	chr6	146560055	146560056	rs55785601	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6q24.3	NR	rs55785601-A	0.05575	2E-8	(ACADS)	0.4909	NR unit decrease	Illumina [1671387] (imputed)	N
1703	chr6	146563921	146563922	rs4272232	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	6q24.3	NR	rs4272232-?	NR	4E-28				Illumina [at least 7383741] (imputed)	N
1703	chr6	146583119	146583120	rs73009056	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Smoking x experiences in childhood (felt loved by family member) interaction	11,465 European ancestry individuals	NA	6q24.3		rs73009056-?	NR	2E-8		0.9806	[0.64-1.32] unit decrease	Affymetrix [NR] (imputed)	N
1703	chr6	146617046	146617047	rs117785887	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-17 levels	7,760 Finnish ancestry individuals	NA	6q24.3	NR	rs117785887-C		9E-6		0.2002	[0.11-0.29] SD units decrease	NR [10700000] (imputed)	N
1703	chr6	146665423	146665424	rs10872587	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	6q24.3	NR	rs10872587-?	NR	1E-12				Illumina [at least 7383741] (imputed)	N
1704	chr6	146681156	146681157	rs362902	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cerebral amyloid deposition (PET imaging)	up to 883 European and other ancestry individuals	NA	6q24.3	GRM1	rs362902-T	0.18	6E-7		0.2696	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
1704	chr6	146681156	146681157	rs362902	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cerebral amyloid deposition (PET imaging)	up to 883 European and other ancestry individuals	NA	6q24.3	GRM1	rs362902-T	0.01	3E-6	(correcting APOE e4)	0.236	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
1705	chr6	146897632	146897633	rs13220141	25642632	Liu H	2015-02-02	Nat Genet	Discovery of six new susceptibility loci and analysis of pleiotropic effects in leprosy.	Leprosy	1,548 Chinese ancestry cases, 2,150 Chinese ancestry controls, 4,362 Chinese ancestry controls with immune-related diseases	6,765 Chinese ancestry cases, 9,505 Chinese ancestry controls	6q24.3	RAB32	rs13220141-A	.209	1E-22		1.27	[NR]	Illumina [4577171] (imputed)	N
1705	chr6	146918949	146918950	rs2275606	22019778	Zhang F	2011-10-23	Nat Genet	Identification of two new loci at IL23R and RAB32 that influence susceptibility to leprosy.	Leprosy	706 Han Chinese ancestry cases, 5,581 Han Chinese ancestry controls	3,301 Han Chinese ancestry cases, 5,299 Han Chinese ancestry controls	6q24.3	RAB32	rs2275606-A	0.21	4E-14		1.3	[1.21-1.39]	NR [1701673] (imputed)	N
1705	chr6	146925675	146925676	rs9497576	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Cathepsin L1 levels	21,758 European ancestry individuals	9,173 individuals	6q24.3		rs9497576-T	0.075	3E-10		0.1136	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1706	chr6	146939391	146939392	rs9403796	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Rostral middle frontal gyrus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	6q24.3	ADGB	rs9403796-?		4E-6				Illumina [4322238] (imputed)	N
1706	chr6	146958620	146958621	rs77509457	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6q24.3	NR	rs77509457-C	0.01916	2E-8	(DPP7)	0.122	NR unit increase	Illumina [1671387] (imputed)	N
1706	chr6	146991068	146991069	rs140930003	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6q24.3	NR	rs140930003-A	0.0122	1E-8	(TOMM70)	0.02142	NR unit increase	Illumina [1671387] (imputed)	N
1706	chr6	146998189	146998190	rs7740903	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Ovarian cancer (MTAG)	647 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6q24.3	Intergenic	rs7740903-?		5E-7		1.1	[1.06-1.14]	Illumina [7645193] (imputed)	N
1706	chr6	146998189	146998190	rs7740903	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Ovarian cancer	647 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6q24.3	Intergenic	rs7740903-?		4E-7		2.19	[1.62-2.97]	Illumina [7645193] (imputed)	N
1706	chr6	147009689	147009690	rs73589840	30557369	Yodsurang V	2018-12-17	PLoS One	Genome-wide association study (GWAS) of ovarian cancer in Japanese predicted regulatory variants in 22q13.1.	Ovarian cancer	681 Japanese ancestry cases, 17,492 Japanese ancestry controls	NA	6q24.3	C6orf103	rs73589840-C	0.0329	7E-6		1.7452006	[1.37-2.22]	Illumina [7521072] (imputed)	N
1706	chr6	147037983	147037984	rs73786719	28642124	Hensman Moss DJ	2017-06-20	Lancet Neurol	Identification of genetic variants associated with Huntington's disease progression: a genome-wide association study.	Huntington's disease progression	1,989 European and unknown ancestry mutation carriers	NA	6q24.3	ADGB	rs73786719-?	NR	9E-7				Illumina [9650000] (imputed)	N
1707	chr6	147098990	147098991	rs4896888	29489655	Liu X	2018-03-01	Medicine (Baltimore)	Genome-wide association study of maternal genetic effects and parent-of-origin effects on food allergy.	Peanut allergy (parent-of-origin effect)	247 European ancestry trios, 7 European ancestry father-child pairs, 33 European ancestry mother-child pairs, 14 European ancestry affected child	NA	6q24.3	ADGB	rs4896888-?	NR	3E-7				Illumina [NR]	N
1707	chr6	147126873	147126874	rs9390422	31766143	Ortega-Azorin C	2019-11-13	Nutrients	Candidate Gene and Genome-Wide Association Studies for Circulating Leptin Levels Reveal Population and Sex-Specific Associations in High Cardiovascular Risk Mediterranean Subjects.	Circulating leptin levels in high cardiovascular risk	351 Spanish mediterranean ancestry men, 615 Spanish mediterranean ancestry women	NA	6q24.3	ADGB	rs9390422-?	0.4	8E-6	(model 3)	0.127	NR unit decrease	Illumina [628376]	N
1707	chr6	147126873	147126874	rs9390422	31766143	Ortega-Azorin C	2019-11-13	Nutrients	Candidate Gene and Genome-Wide Association Studies for Circulating Leptin Levels Reveal Population and Sex-Specific Associations in High Cardiovascular Risk Mediterranean Subjects.	Circulating leptin levels in high cardiovascular risk	351 Spanish mediterranean ancestry men, 615 Spanish mediterranean ancestry women	NA	6q24.3	ADGB	rs9390422-?	0.4	7E-6	(women, model 3)	0.156	NR unit decrease	Illumina [628376]	N
1707	chr6	147184977	147184978	rs9497657	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Faecalicatena glycyrrhizinilyticum abundance in stool	5,959 Finnish ancestry individuals	NA	6q24.3		rs9497657-T	0.028783	2E-8		0.142414	[0.092-0.192] unit increase	Illumina [7980478] (imputed)	N
1708	chr6	147215895	147215896	rs927671	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6q24.3	RAB32	rs927671-?	NR	8E-6	(beta aminoisobutyric acid)	0.6215357	[0.35-0.89] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1709	chr6	147338736	147338737	rs144383963	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		STXBP5-AS1	rs144383963-?	NR	1E-8	(female)	0.453049	[NR] unit increase	Affymetrix [NR] (imputed)	N
1709	chr6	147401192	147401193	rs6570789	33547071	Bonfante B	2021-02-05	Sci Adv	A GWAS in Latin Americans identifies novel face shape loci, implicating VPS13B and a Denisovan introgressed region in facial variation.	Facial morphology (lower lip protrusion)	6,169 Latin American individuals	NA	6q24.3		rs6570789-?	NR	3E-7				Illumina [8703729] (imputed)	N
1709	chr6	147401192	147401193	rs6570789	33547071	Bonfante B	2021-02-05	Sci Adv	A GWAS in Latin Americans identifies novel face shape loci, implicating VPS13B and a Denisovan introgressed region in facial variation.	Facial morphology (lip protrusion)	6,169 Latin American individuals	NA	6q24.3		rs6570789-?	NR	1E-8				Illumina [8703729] (imputed)	N
1709	chr6	147409447	147409448	rs12664716	30659475	Arias-Vasquez A	2019-01-18	Behav Genet	A Potential Role for the STXBP5-AS1 Gene in Adult ADHD Symptoms.	Attention deficit hyperactivity disorder symptom score	14,689 European ancestry adults, 14,776 children	NA	6q24.3	STXBP5-AS1	rs12664716-?		2E-7				Affymetrix, Illumina, Perlegen [2804754] (imputed)	N
1710	chr6	147503695	147503696	rs76363088	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6q24.3	NR	rs76363088-T	0.01916	9E-9	(LGMN)	0.004916	NR unit increase	Illumina [1671387] (imputed)	N
1710	chr6	147503695	147503696	rs76363088	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6q24.3	NR	rs76363088-T	0.01916	1E-8	(APOD)	0.02238	NR unit increase	Illumina [1671387] (imputed)	N
1710	chr6	147531080	147531081	rs2786189	23897914	Wang H	2013-07-29	Pediatrics	A genome-wide association study (GWAS) for bronchopulmonary dysplasia.	Bronchopulmonary dysplasia	117 African American newborn cases, 108 African American newborn controls, 448 Hispanic newborn cases, 460 Hispanic newborn controls, 74 Asian or Pacific Islander ancestry newborn cases, 93 Asian or Pacific Islander ancestry newborn controls, 174 European ancestry newborn cases, 216 European ancestry newborn controls, 14 newborn cases, 22 newborn controls	371 newborn cases, 424 newborn controls	6q24.3	STXBP5	rs2786189-C	0.48	5E-6	(Hispanic)	1.4706	[NR]	Illumina [1795103]	N
1710	chr6	147534564	147534566	rs555181635	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	6q24.3	STXBP5	rs555181635-T	0.401219	6E-13		0.016264275	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1710	chr6	147535304	147535305	rs1221638	26486471	van Loon J	2015-10-21	Eur J Hum Genet	Genome-wide association studies identify genetic loci for low von Willebrand factor levels.	Low vWF levels	up to 1,635 European ancestry individuals with low vWF levels, up to 33,286 European ancestry individuals with normal vWF levels	NA	6q24.3	STXBP5	rs1221638-?	NR	6E-10		1.28	[1.19-1.39]	Affymetrix, Illumina [~ 2600000] (imputed)	N
1710	chr6	147549296	147549297	rs556493	23897914	Wang H	2013-07-29	Pediatrics	A genome-wide association study (GWAS) for bronchopulmonary dysplasia.	Bronchopulmonary dysplasia	117 African American newborn cases, 108 African American newborn controls, 448 Hispanic newborn cases, 460 Hispanic newborn controls, 74 Asian or Pacific Islander ancestry newborn cases, 93 Asian or Pacific Islander ancestry newborn controls, 174 European ancestry newborn cases, 216 European ancestry newborn controls, 14 newborn cases, 22 newborn controls	371 newborn cases, 424 newborn controls	6q24.3	STXBP5, YAP1P1	rs556493-A	0.46	1E-6		1.3514	[0.66-0.84]	Illumina [1795103]	N
1710	chr6	147551380	147551381	rs17076671	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	6q24.3	NR	rs17076671-?	NR	4E-12				Affymetrix [NR]	N
1710	chr6	147570238	147570239	rs620715	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 157,769 European ancestry controls	NA	6q24.3	NR	rs620715-?	NR	4E-7		0.0512	[0.031-0.071] unit decrease	Affymetrix, Illumina [12923718] (imputed)	N
1710	chr6	147570845	147570847	rs67119129	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	6q24.3	NR	rs67119129-?	NR	4E-6		0.0405	[0.023-0.058] unit decrease	Illumina [at least 560000] (imputed)	N
1710	chr6	147572379	147572380	rs474990	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	6q24.3		rs474990-G	NR	4E-8		0.0106	[0.0069-0.0143] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1711	chr6	147590018	147590019	rs78477794	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Alcohol consumption x experiences in childhood (felt loved by family member) interaction	41,648 European ancestry individuals	NA	6q24.3		rs78477794-?	NR	1E-8		1.7206	[1.13-2.31] unit decrease	Affymetrix [NR] (imputed)	N
1711	chr6	147645476	147645477	rs140301931	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		STXBP5	rs140301931-?	NR	3E-10	(female)	0.645168	[NR] unit increase	Affymetrix [NR] (imputed)	N
1711	chr6	147679630	147679631	rs4896907	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	6q24.3	NR	rs4896907-?	NR	7E-6		0.0395	[0.022-0.057] unit increase	Illumina [at least 560000] (imputed)	N
1711	chr6	147680358	147680359	rs9390459	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Hypertension	810,865 European ancestry individuals	354,096 European ancestry individuals	6q24.3		rs9390459-A	0.4351	1E-8		5.68306	z score increase	Affymetrix, Illumina [239843] (imputed)	N
1711	chr6	147680358	147680359	rs9390459	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	6q24.3		rs9390459-A	0.4331	1E-9		0.08561411	[0.058-0.113] mmHg increase	Affymetrix, Illumina [242866] (imputed)	N
1711	chr6	147680358	147680359	rs9390459	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	6q24.3	STXBP5	rs9390459-G	0.573963	1E-10		0.014573227	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
1711	chr6	147680358	147680359	rs9390459	20231535	Smith NL	2010-03-15	Circulation	Novel associations of multiple genetic loci with plasma levels of factor VII, factor VIII, and von Willebrand factor: The CHARGE (Cohorts for Heart and Aging Research in Genome Epidemiology) Consortium.	vWF levels	17,596 European ancestry individuals	Up to 7,604 European ancestry individuals	6q24.3	STXBP5	rs9390459-?	NR	1E-22		4.8	[2.1-7.5] unit decrease	Affymetrix, Illumina [2742821] (imputed)	N
1711	chr6	147689699	147689700	rs58987334	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q24.3	NR	rs58987334-A	0.430127	1E-11				Affymetrix, Illumina [17210439] (imputed)	N
1711	chr6	147689699	147689700	rs58987334	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	6q24.3	NR	rs58987334-A	0.427185	8E-14		0.014506	[0.011-0.018] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
1711	chr6	147694333	147694334	rs9390460	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	6q24.3		rs9390460-C	NR	7E-9		0.0126	[0.0083-0.0169] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
1711	chr6	147694333	147694334	rs9390460	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q24.3	NR	rs9390460-C	0.481383	5E-16				Affymetrix, Illumina [24649327] (imputed)	N
1711	chr6	147694333	147694334	rs9390460	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q24.3	NR	rs9390460-C	0.502787	1E-17				Affymetrix, Illumina [23114412] (imputed)	N
1711	chr6	147694333	147694334	rs9390460	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	6q24.3	NR	rs9390460-C	0.53796	3E-10		0.011811	[0.0081-0.0155] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
1711	chr6	147694333	147694334	rs9390460	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 157,769 European ancestry controls	NA	6q24.3	NR	rs9390460-?	NR	8E-10		0.0618	[0.042-0.082] unit decrease	Affymetrix, Illumina [12923718] (imputed)	N
1711	chr6	147694333	147694334	rs9390460	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	6q24.3	STXBP5	rs9390460-T	0.46	6E-42		0.033	[0.028-0.038] unit decrease	Affymetrix, Illumina [10537485] (imputed)	N
1711	chr6	147694333	147694334	rs9390460	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	6q24.3	STXBP5	rs9390460-T	0.46	6E-38	(EA)	0.0325	[0.028-0.037] unit decrease	Affymetrix, Illumina [10537485] (imputed)	N
1711	chr6	147694333	147694334	rs9390460	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	Factor VIII levels	25,897 European ancestry individuals, 4,500 African American individuals, 773 Asian ancestry individuals, 1,440 Hispanic individuals	NA	6q24.3	STXBP5	rs9390460-T	0.47	2E-15		0.019	NR unit decrease	Affymetrix, Illumina [13887196] (imputed)	N
1711	chr6	147699122	147699123	rs2328813	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	6q24.3		rs2328813-A	0.5692	6E-12		0.15113412	[0.11-0.2] mmHg decrease	Affymetrix, Illumina [242865] (imputed)	N
1711	chr6	147699545	147699546	rs34601059	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	6q24.3		rs34601059-T	NR	1E-8		0.0136	[0.0089-0.0183] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
1711	chr6	147701132	147701133	rs9373523	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 799 African American cases, 157,769 European ancestry controls, 14,353 African American controls	NA	6q24.3	STXBP5	rs9373523-G	NR	5E-9		1.0638298	[1.04-1.08]	Affymetrix, Illumina [12923718] (imputed)	N
1711	chr6	147701132	147701133	rs9373523	20694014	Thye T	2010-08-08	Nat Genet	Genome-wide association analyses identifies a susceptibility locus for tuberculosis on chromosome 18q11.2.	Tuberculosis	2,237 Sub-Saharan African ancestry cases, 3,122 Sub-Saharan African ancestry controls	1,462 Sub-Saharan African ancestry cases, 4,604 Sub-Saharan African ancestry controls	6q24.3	NR	rs9373523-?	0.81	1E-6		1.3	[1.11-1.43]	Affymetrix [> 333754] (imputed)	N
1711	chr6	147701216	147701217	rs9390461	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6q24.3	STXBP5	rs9390461-G	0.540221	1E-13		0.016433062	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1711	chr6	147701216	147701217	rs9390461	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	6q24.3	STXBP5	rs9390461-G	0.540317	1E-15		0.017763805	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1711	chr6	147701216	147701217	rs9390461	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	6q24.3	NR	rs9390461-G	0.538265	9E-17		0.015366	[0.012-0.019] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
1711	chr6	147701216	147701217	rs9390461	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	6q24.3	NR	rs9390461-G	0.538879	3E-20		0.017735	[0.014-0.022] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
1711	chr6	147701216	147701217	rs9390461	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	6q24.3		rs9390461-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1711	chr6	147701216	147701217	rs9390461	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	Factor VIII levels	25,897 European ancestry individuals, 4,500 African American individuals, 773 Asian ancestry individuals, 1,440 Hispanic individuals	NA	6q24.3	STXBP5	rs9390461-?	NR	3E-13	(EA)			Affymetrix, Illumina [13887196] (imputed)	N
1711	chr6	147701216	147701217	rs9390461	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	Factor VIII levels	25,897 European ancestry individuals, 4,500 African American individuals, 773 Asian ancestry individuals, 1,440 Hispanic individuals	NA	6q24.3	STXBP5	rs9390461-?	NR	2E-14				Affymetrix, Illumina [13887196] (imputed)	N
1711	chr6	147702146	147702147	rs9390463	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	6q24.3		rs9390463-G	NR	3E-8		0.0113	[0.0074-0.0152] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
1711	chr6	147703298	147703299	rs9399599	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	Factor VIII levels	25,897 European ancestry individuals, 4,500 African American individuals, 773 Asian ancestry individuals, 1,440 Hispanic individuals	NA	6q24.3	STXBP5	rs9399599-A	0.47	4E-13	(EA)	0.0195	[0.014-0.025] unit decrease	Affymetrix, Illumina [13887196] (imputed)	N
1711	chr6	147703298	147703299	rs9399599	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	Factor VIII levels	25,897 European ancestry individuals, 4,500 African American individuals, 773 Asian ancestry individuals, 1,440 Hispanic individuals	NA	6q24.3	STXBP5	rs9399599-A	0.47	1E-15		0.0195	[0.015-0.024] unit decrease	Affymetrix, Illumina [13887196] (imputed)	N
1711	chr6	147703298	147703299	rs9399599	24578379	Huang J	2014-02-27	Arterioscler Thromb Vasc Biol	Genome-wide association study for circulating tissue plasminogen activator levels and functional follow-up implicates endothelial STXBP5 and STX2.	Plasma plasminogen activator levels	26,217 European ancestry individuals, 712 Orcadian individuals	4,487 European ancestry individuals	6q24.3	STXBP5	rs9399599-T	0.54	3E-14		0.032	[0.024-0.04] unit increase	Affymetrix, Illumina [2455857] (imputed)	N
1711	chr6	147713763	147713764	rs7765526	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	6q24.3	RP11-361F15.2	rs7765526-A	0.459491	1E-9		0.013626388	[0.0092-0.018] unit increase	Affymetrix [93095623] (imputed)	N
1711	chr6	147713763	147713764	rs7765526	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q24.3	NR	rs7765526-G	0.499987	5E-10				Affymetrix, Illumina [23467995] (imputed)	N
1711	chr6	147713763	147713764	rs7765526	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	NA	6q24.3	STXBP5	rs7765526-A	0.4633	6E-11		0.201	[0.14-0.26] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1711	chr6	147714725	147714725	rs141496806	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	6q24.3		rs141496806-AAAGTATAG	NR	1E-9		0.0141	[0.0096-0.0186] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1712	chr6	147759533	147759534	rs9403856	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6q24.3	NR	rs9403856-C	0.86167473954116	4E-7	(IGP12)	0.3492	[0.21-0.48] unit increase	Illumina [~ 2500000] (imputed)	N
1712	chr6	147759533	147759534	rs9403856	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6q24.3	NR	rs9403856-C	0.861471281137184	7E-7	(IGP73)	0.341	[0.21-0.48] unit increase	Illumina [~ 2500000] (imputed)	N
1712	chr6	147759533	147759534	rs9403856	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6q24.3	NR	rs9403856-C	0.861277425090253	2E-6	(IGP52)	0.3292	[0.19-0.46] unit increase	Illumina [~ 2500000] (imputed)	N
1713	chr6	147934946	147934947	rs9377063	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6q24.3	SAMD5	rs9377063-A	0.259	8E-6	(Urinary free dopamine: creatinine)	0.04	[NR] unit increase	Illumina [899892]	N
1713	chr6	147936780	147936781	rs2050185	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	6q24.3	SAMD5, SASH1	rs2050185-A	0.6245	7E-9		1.0219371		Affymetrix [11880941] (imputed)	N
1713	chr6	147940785	147940786	rs12197416	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6q24.3		rs12197416-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1713	chr6	147950421	147950422	rs725616	30718901	Howard DM	2019-02-04	Nat Neurosci	Genome-wide meta-analysis of depression identifies 102 independent variants and highlights the importance of the prefrontal brain regions.	Depression	118,811 European ancestry cases, 327,427 European ancestry controls, 127,552 cases, 233,763 controls	414,055 European ancestry cases, 892,299 European ancestry controls	6q24.3	NR	rs725616-T	0.3644	1E-9		1.014	[1.009-1.018]	NR [8098588] (imputed)	N
1713	chr6	147971573	147971574	rs1302019	23049088	Meng W	2012-10-09	Invest Ophthalmol Vis Sci	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		6q24.3	intergenic	rs1302019-?	0.022	2E-23			[NR]	Affymetrix, Illumina [152234]	N
1713	chr6	147973295	147973296	rs4895718	33740410	Warrier V	2021-03-16	Lancet Psychiatry	Gene-environment correlations and causal effects of childhood maltreatment on physical and mental health: a genetically informed approach.	Childhood maltreatment	185,414 European ancestry individuals	NA	6q24.3	NR	rs4895718-T	0.66	5E-8		0.02	[0.012-0.028] unit decrease	Affymetrix, Illumina [at least 500527] (imputed)	N
1714	chr6	147980908	147980909	rs1147852	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	6q24.3	NR	rs1147852-A	0.3095	1E-9		1.04	[1.03-1.05]	Affymetrix, Illumina [NR] (imputed)	N
1714	chr6	147983559	147983560	rs1147851	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling tense	371,318 European ancestry individuals	NA	6q24.3	SAMD5	rs1147851-A	0.284644	5E-9		5.85	z score decrease	NR [10847151] (imputed)	N
1714	chr6	147986023	147986024	rs9399613	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Ease of getting up in the morning	385,949 European ancestry individuals	NA	6q24.3	NR	rs9399613-T	0.2861	1E-8		0.0109	[0.0072-0.0146] unit decrease	Affymetrix, Illumina [10862568] (imputed)	N
1714	chr6	147993053	147993054	rs9390491	27611488	Almoguera B	2016-09-09	Am J Respir Crit Care Med	Identification of Four Novel Loci in Asthma in European American and African American Populations.	Asthma	819 African American non-allergic asthma cases, 2,218 African American allergic asthma cases 4,360 African American controls, 808 European American non-allergic asthma cases, 1,464 European American allergic asthma cases, 11,975 European American controls	NA	6q24.3	SAMD5	rs9390491-?		9E-6	(AA)	0.278	[0.19-0.36] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1714	chr6	148024929	148024930	rs58521224	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6q24.3	NR	rs58521224-C	0.0122	2E-8	(EPHX1)	4.809	NR unit increase	Illumina [1671387] (imputed)	N
1714	chr6	148056479	148056480	rs9399619	30279459	van der Meer D	2018-10-02	Mol Psychiatry	Brain scans from 21,297 individuals reveal the genetic architecture of hippocampal subfield volumes.	Subiculum volume (corrected for total hippocampal volume)	21,297 European ancestry individuals	NA	6q24.3	SAMD5	rs9399619-G	NR	6E-9		2.31	NR mm3 increase	Affymetrix, Illumina [NR] (imputed)	N
1714	chr6	148091678	148091679	rs78289332	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure	35,269 European ancestry cases, 63,451 European ancestry controls	NA	6q24.3	NR	rs78289332-A	0.0409443	5E-6		1.064	[1.04-1.09]	Affymetrix [7791636] (imputed)	N
1715	chr6	148132904	148132905	rs117834487	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mode of anisotropy)	17,706 European ancestry individuals	NA	6q24.3	NR	rs117834487-?		3E-9	(Genu of corpus callosum)			NR [8955960] (imputed)	N
1715	chr6	148152076	148152077	rs10484683	31231134	Laskar RS	2019-06-23	Eur J Hum Genet	Sex specific associations in genome wide association analysis of renal cell carcinoma.	Renal cell carcinoma	3,227 European ancestry male cases, 4,916 European ancestry male controls	2,261 European ancestry male cases, 5,852 European ancestry male controls	6q24.3	SAMD5	rs10484683-A	NR	2E-8		1.2048193	[1.12-1.28]	Illumina [~ 6000000] (imputed)	N
1715	chr6	148192961	148192962	rs11753921	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6q24.3	NR	rs11753921-C	0.419	1E-5	(IFNalpha_ABC_of_CD56dimCD16p)			Illumina [5084123] (imputed)	N
1715	chr6	148229628	148229629	rs618688	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Esophageal or stomach cancer	1,091 European ancestry cases, 410,350 European ancestry controls	NA	6q24.3		rs618688-A	0.413291000000001	6E-7		1.241465	NR	Affymetrix [7846216] (imputed)	N
1716	chr6	148244700	148244701	rs474210	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6q24.3	Intergenic	rs474210-A	0.4762	1E-11	(MTAG)	0.0089	[0.0064-0.0114] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1716	chr6	148266418	148266419	rs11759190	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	6q24.3	Intergenic	rs11759190-A	0.4722	4E-9	(MTAG)	0.0097	[0.0064-0.013] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1716	chr6	148268572	148268573	rs11966598	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6q24.3	SASH1	rs11966598-?	NR	4E-6	(pyruvate)	0.31418774	[0.18-0.45] unit increase	Affymetrix [at least 2500000] (imputed)	N
1716	chr6	148273663	148273664	rs34286836	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6q24.3		rs34286836-T	0.4479	3E-10		0.0089	[0.0062-0.0116] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1716	chr6	148274931	148274932	rs6905027	34224794	Wang K	2021-07-02	Prog Neuropsychopharmacol Biol Psychiatry	Genome-wide association study identified INSC gene associated with Trail Making Test Part A and Alzheimer's disease related cognitive phenotypes.	Perceptual and visual search speed (trail making test A)	684 European ancestry individuals, 17 Hispanic individuals, 36 African American individuals, 18 individuals	NA	6q24.3		rs6905027-T	NR	9E-6		0.05935	[0.033-0.085] unit increase	NR [534934]	N
1716	chr6	148372080	148372081	rs9322121	29703947	Jawinski P	2018-04-27	Mol Psychiatry	Human brain arousal in the resting state: a genome-wide association study.	Resting-state electroencephalogram vigilance	1,877 European ancestry individuals	NA	6q24.3	SASH1	rs9322121-T	0.675	5E-6	(Slope index)	0.1373	[0.079-0.196] unit decrease	Affymetrix [8042262] (imputed)	N
1717	chr6	148390472	148390473	rs112390069	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	6q24.3	SASH1	rs112390069-C	NR	1E-6	(wake after sleep onset, weekdays)	0.2128	[0.13-0.3] unit decrease	Affymetrix [7141204] (imputed)	N
1717	chr6	148402213	148402214	rs4896964	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6q24.3	NR	rs4896964-G	0.05052	1E-8	(MARC2)	0.07232	NR unit increase	Illumina [1671387] (imputed)	N
1717	chr6	148409520	148409521	rs9485244	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	6q24.3	NR	rs9485244-?	NR	1E-8				Illumina [7760689] (imputed)	N
1717	chr6	148423370	148423371	rs9390537	20061627	Heinzen EL	2009-09-11	J Alzheimers Dis	Genome-wide scan of copy number variation in late-onset Alzheimer's disease.	Alzheimer's disease	331 European ancestry cases, 368 European ancestry controls	NA	6q24.3	SASH1	rs9390537-?	0.22	8E-6				Illumina [~ 550000]	N
1718	chr6	148506611	148506612	rs17078110	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial lung adenocarcinoma	775 European ancestry cases, 31,563 European ancestry controls	NA	6q24.3	NR	rs17078110-C	0.01	1E-6		3.9	[2.24-6.76]	Illumina [8672852] (imputed)	N
1718	chr6	148514300	148514301	rs6914622	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	6q24.3		rs6914622-T	NR	7E-21		0.0859	[0.068-0.104] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1718	chr6	148514300	148514301	rs6914622	32581359	Saevarsdottir S	2020-06-24	Nature	FLT3 stop mutation increases FLT3 ligand level and risk of autoimmune thyroid disease.	Autoimmune thyroid disease	30,234 European ancestry cases, 724,172 European ancestry controls	NA	6q24.3	NR	rs6914622-T	0.324	2E-18		1.09	[NR]	Affymetrix, Illumina [42900000] (imputed)	N
1718	chr6	148514300	148514301	rs6914622	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	6q24.3	RP11-631F7.1	rs6914622-T	0.321667	9E-20		0.089143105	[0.07-0.108] unit increase	Affymetrix [7288503] (imputed)	N
1718	chr6	148514300	148514301	rs6914622	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Autoimmune traits	approximately 459,000 European ancestry individuals	NA	6q24.3		rs6914622-?	NR	3E-10				NR [~ 8900000] (imputed)	N
1718	chr6	148514300	148514301	rs6914622	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Hypothyroidism	17,558 European ancestry cases, 117,083 European ancestry controls	NA	6q24.3	SAMD5, SASH1	rs6914622-?	NR	1E-14		1.109	[1.08-1.14]	Illumina [13676411] (imputed)	N
1718	chr6	148521291	148521292	rs9497965	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hypothyroidism	30,155 European ancestry cases, 379,986 European ancestry controls, 1,114 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	6q24.3		rs9497965-T	NR	4E-16		0.0827	[0.063-0.103] unit increase	Affymetrix, Illumina [25801083] (imputed)	N
1718	chr6	148521291	148521292	rs9497965	32769997	Zhou W	2020-08-07	Nat Commun	GWAS of thyroid stimulating hormone highlights pleiotropic effects and inverse association with thyroid cancer.	Thyroid stimulating hormone levels	119,715 European ancestry individuals	NA	6q24.3	SAMD5, SASH1	rs9497965-T	0.386507768927284	1E-17		0.0402	[0.031-0.049] SD increase	Illumina [22400000] (imputed)	N
1718	chr6	148521291	148521292	rs9497965	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	6q24.3		rs9497965-?	NR	2E-18				NR [~ 8900000] (imputed)	N
1718	chr6	148521291	148521292	rs9497965	23408906	Porcu E	2013-02-07	PLoS Genet	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 14,459 European ancestry females, up to 10,936 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males	NA	6q24.3	SASH1	rs9497965-T	0.415	3E-8	(TSH - Females)	0.067	[0.043-0.091] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1718	chr6	148521291	148521292	rs9497965	23408906	Porcu E	2013-02-07	PLoS Genet	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 14,459 European ancestry females, up to 10,936 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males	NA	6q24.3	SASH1	rs9497965-T	0.415	2E-8	(TSH)	0.051	[0.033-0.069] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1718	chr6	148547801	148547802	rs9497975	20041166	Fellay J	2009-12-24	PLoS Genet	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	6q24.3	intergenic	rs9497975-?	NR	7E-8	(progression)			Illumina [NR]	N
1718	chr6	148571508	148571509	rs13201081	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	6q24.3		rs13201081-?	NR	5E-11				NR [~ 8900000] (imputed)	N
1718	chr6	148587235	148587236	rs140644323	29495422	Xu H	2018-02-26	J Pers Med	A Genome-Wide Association Study of Idiopathic Dilated Cardiomyopathy in African Americans.	Idiopathic dilated cardiomyopathy	662 African American cases, 1,138 African American controls	NA	6q24.3	SAMD5, SASH1	rs140644323-G	0.032	9E-6		1.01	[1.03-74.47]	Affymetrix [up to 27494467] (imputed)	N
1719	chr6	148643959	148643960	rs9390556	34177598	Wolking S	2021-06-09	Front Pharmacol	Role of Common Genetic Variants for Drug-Resistance to Specific Anti-Seizure Medications.	Response to levetiracetam in epilepsy	343 European ancestry cases, 895 European ancestry controls	NA			rs9390556-?	NR	5E-6				Illumina [NR] (imputed)	N
1719	chr6	148645971	148645972	rs4418208	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6q24.3	NR	rs4418208-T	0.088	7E-6	(IFNgamma_STAT1_of_CD4p_T)			Illumina [5084123] (imputed)	N
1719	chr6	148704953	148704954	rs6930576	21150874	McDonough CW	2010-12-08	Kidney Int	A genome-wide association study for diabetic nephropathy genes in African Americans.	Type 2 diabetes nephropathy	965 African American cases, 1,029 African American controls	709 African American cases, 690 African American controls	6q24.3	SASH1	rs6930576-A	0.28	7E-7		1.31	[1.18-1.45]	Affymetrix [832357]	N
1719	chr6	148737040	148737041	rs4897010	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	6q24.3		rs4897010-?	NR	5E-11				NR [~ 8900000] (imputed)	N
1719	chr6	148765737	148765738	rs73013165	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	6q24.3	SASH1	rs73013165-A	0.211146	1E-5		1.04	[1.02-1.06]	NR [8126035] (imputed)	N
1720	chr6	148787158	148787159	rs12527089	26350878	Tashjian RZ	2015-09-05	J Shoulder Elbow Surg	Genome-wide association study for rotator cuff tears identifies two significant single-nucleotide polymorphisms.	Rotator cuff tears	311 European ancestry cases, 2,641 European ancestry controls	NA	6q24.3	SASH1	rs12527089-?	NR	2E-7				Illumina [257558]	N
1720	chr6	148788005	148788006	rs6930337	18464913	Melzer D	2008-05-09	PLoS Genet	A genome-wide association study identifies protein quantitative trait loci (pQTLs).	Protein quantitative trait loci	1,200 European ancestry individuals	up to 4,590 European ancestry individuals	6q24.3	SASH1	rs6930337-?	0.06	1E-6	(insulin)			Illumina [496032]	N
1720	chr6	148799051	148799052	rs7769947	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Phoneme awareness	3,093 European ancestry individuals	NA	6q24.3	CYP51A1P3	rs7769947-C	0.374051429	5E-6		0.13974	[0.08-0.2] unit increase	Illumina [6969139] (imputed)	N
1720	chr6	148829440	148829441	rs6935952	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	6q25.1		rs6935952-?	NR	3E-20				NR [~ 8900000] (imputed)	N
1720	chr6	148829440	148829441	rs6935952	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6q25.1		rs6935952-?	NR	2E-17		0.0198274	[0.016-0.024] unit increase	Affymetrix [20259828] (imputed)	N
1720	chr6	148841751	148841752	rs1147857	24665060	Argos M	2014-03-24	J Med Genet	Genome-wide association study of smoking behaviours among Bangladeshi adults.	Smoking quantity	1,837 Bangladeshi ancestry males, 198 Bangladeshi ancestry females	NA	6q25.1	NR	rs1147857-?		2E-6				Illumina [1211988] (imputed)	N
1720	chr6	148881727	148881728	rs73017046	29071344	Zhou H	2017-10-25	JAMA Psychiatry	Genetic Risk Variants Associated With Comorbid Alcohol Dependence and Major Depression.	Major depression and alcohol dependence	3,041 African American individuals, 1,618 European ancestry individuals	1,612 African American individuals, 1,551 European ancestry individuals	6q25.1	intergenic	rs73017046-G	0.853	6E-6	(AA)	0.83	unit increase	Illumina [at least 5086170] (imputed)	N
1721	chr6	148909270	148909271	rs60463810	31219150	Ekenberg C	2019-06-13	J Infect Dis	Single nucleotide polymorphisms in HLA alleles are associated with HIV-1 viral load in demographically diverse, ART-naive participants from the START trial.	Pre-treatment viral load in HIV-1 infection	1,398 European ancestry individuals, 572 Black individuals, 418 Hispanic individuals, 13 Asian ancestry individuals, 39 individuals	NA	6q25.1	intergenic	rs60463810-T	0.108	6E-16		0.3	[0.23-0.38] unit decrease	Affymetrix [339439]	N
1721	chr6	148923788	148923789	rs13196614	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NA	6q25.1	intergenic	rs13196614-T	0.18	5E-6		1.08	[1.04-1.11]	Affymetrix, Illumina [~ 2300000] (imputed)	N
1721	chr6	148943173	148943174	rs9403969	28077804	Ben-Avraham D	2017-01-10	Aging (Albany NY)	The complex genetics of gait speed: genome-wide meta-analysis approach.	Gait speed in old age	31,478 European ancestry older adults	2,588 European ancestry older adults	6q25.1	SASH1	rs9403969-T	NR	2E-6		0.0087	[0.005-0.0124] m/sec increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1721	chr6	148999453	148999454	rs9498113	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Cuneus cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	6q25.1	NR	rs9498113-?		4E-6				Illumina [4322238] (imputed)	N
1722	chr6	149059290	149059291	rs190298731	25027321	Hoffmann TJ	2014-07-15	Hum Mol Genet	Genome-wide association and admixture analysis of glaucoma in the Women's Health Initiative.	Glaucoma	658 African American prevalent cases, 1,062 African American incident cases, 6,067 African American controls, 153 Hispanic prevalent cases, 336 Hispanic incident cases, 2,685 Hispanic controls	NA	6q25.1	NR	rs190298731-T	0.082	3E-8	(Hispanic, incident)	2.3	[1.71-3.09]	Affymetrix [up to 15784307] (imputed)	N
1722	chr6	149059290	149059291	rs190298731	25027321	Hoffmann TJ	2014-07-15	Hum Mol Genet	Genome-wide association and admixture analysis of glaucoma in the Women's Health Initiative.	Glaucoma	658 African American prevalent cases, 1,062 African American incident cases, 6,067 African American controls, 153 Hispanic prevalent cases, 336 Hispanic incident cases, 2,685 Hispanic controls	NA	6q25.1	NR	rs190298731-T	0.082	1E-6	(Hispanic)	1.92	[1.47-2.49]	Affymetrix [up to 15784307] (imputed)	N
1722	chr6	149064985	149064986	rs11155591	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein UST	5,361 Icelandic ancestry individuals	NA	6q25.1		rs11155591-T	0.3158	1E-12		0.142823	[0.1-0.18] unit decrease	Illumina [7506463] (imputed)	N
1722	chr6	149064985	149064986	rs11155591	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6q25.1	UST	rs11155591-C	0.68484375	1E-8	(UST, 8364_74_3)	0.14949137	[0.098-0.201] unit increase	Illumina [> 1000000] (imputed)	N
1722	chr6	149068777	149068778	rs45490997	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	6q25.1	NR	rs45490997-?	NR	8E-6		0.0075637	[0.0043-0.0109] unit increase	Affymetrix [805426] (imputed)	N
1722	chr6	149112189	149112190	rs13211840	27271309	Li C	2016-08-01	Hypertension	Genome-Wide Gene-Sodium Interaction Analyses on Blood Pressure: The Genetic Epidemiology Network of Salt-Sensitivity Study.	Diastolic blood pressure x sodium interaction (2df test)	1,876 Han Chinese ancestry individuals	775 Chinese ancestry individuals	6q25.1	UST	rs13211840-?	NR	7E-9				Affymetrix [2216774] (imputed)	N
1722	chr6	149112189	149112190	rs13211840	27271309	Li C	2016-08-01	Hypertension	Genome-Wide Gene-Sodium Interaction Analyses on Blood Pressure: The Genetic Epidemiology Network of Salt-Sensitivity Study.	Diastolic blood pressure x sodium interaction (1df test)	1,876 Han Chinese ancestry individuals	775 Chinese ancestry individuals	6q25.1	UST	rs13211840-?	NR	3E-9				Affymetrix [2216774] (imputed)	N
1722	chr6	149113145	149113146	rs35751268	25987507	Minica CC	2015-05-19	Behav Genet	Heritability, SNP- and Gene-Based Analyses of Cannabis Use Initiation and Age at Onset.	Cannabis use (initiation)	1,357 European ancestry users, 5,387 European ancestry never users	NA	6q25.1	NR	rs35751268-T	NR	7E-6		0.23	[0.13-0.33] unit increase	NR [5896100] (imputed)	N
1723	chr6	149169152	149169153	rs73001127	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	6q25.1		rs73001127-T	NR	8E-9		0.0109	[0.0072-0.0146] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1723	chr6	149172548	149172549	rs9403991	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6q25.1		rs9403991-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1723	chr6	149270828	149270829	rs13219957	23620144	Sulkava S	2013-04-29	Hum Mol Genet	Genome-wide scan of job-related exhaustion with three replication studies implicate a susceptibility variant at the UST gene locus.	Job-related exhaustion	1,256 European ancestry individuals	13,864 European ancestry individuals	6q25.1	UST	rs13219957-A	0.144	7E-7		0.081	[0.050-0.112] unit increase	Illumina [555388]	N
1724	chr6	149329266	149329267	rs2500535	20360315	Uher R	2010-04-01	Am J Psychiatry	Genome-wide pharmacogenetics of antidepressant response in the GENDEP project.	Response to antidepressants	706 European ancestry individuals	NA	6q25.1	UST	rs2500535-A	0.06	9E-6	(genotype x drug)	29.7	[NR] unit decrease	Illumina [539391]	N
1724	chr6	149329266	149329267	rs2500535	20360315	Uher R	2010-04-01	Am J Psychiatry	Genome-wide pharmacogenetics of antidepressant response in the GENDEP project.	Response to antidepressants	706 European ancestry individuals	NA	6q25.1	UST	rs2500535-A	0.06	4E-8	(nortriptyline)	27.0	[NR] unit decrease	Illumina [539391]	N
1724	chr6	149357546	149357547	rs10457838	25456346	Nievergelt CM	2014-10-30	Psychoneuroendocrinology	Genomic predictors of combat stress vulnerability and resilience in U.S. Marines: A genome-wide association study across multiple ancestries implicates PRTFDC1 as a potential PTSD gene.	Post-traumatic stress disorder	940 European, Hispanic, Native American, African American, East Asian and other ancestry cases, 2,554 European, Hispanic, Native American, African American, East Asian and other ancestry trauma-exposed controls	313 European ancestry cases, 178 European ancestry trauma-exposed controls	6q25.1	UST	rs10457838-C	0.724	2E-6	(African American)	6.702	[5.93-7.48]	Illumina [21693469] (imputed)	N
1724	chr6	149362201	149362202	rs17669546	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6q25.1		rs17669546-?	NR	3E-11				NR [~ 8900000] (imputed)	N
1724	chr6	149399099	149399100	rs117984853	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atrial fibrillation/atrial flutter	29,212 European ancestry cases, 400,539 European ancestry controls, 4,150 East Asian ancestry cases, 155,540 East Asian ancestry controls	NA	6q25.1		rs117984853-T	NR	2E-16		0.1387	[0.11-0.17] unit increase	Affymetrix, Illumina [25830072] (imputed)	N
1724	chr6	149399099	149399100	rs117984853	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	6q25.1	UST	rs117984853-T	0.101	1E-24		1.13	[1.10-1.16]	Illumina [34740186] (imputed)	N
1724	chr6	149399099	149399100	rs117984853	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	6q25.1	UST	rs117984853-T	0.09	8E-17		1.12	[1.09-1.15]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1724	chr6	149399099	149399100	rs117984853	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	6q25.1	UST	rs117984853-T	0.09	3E-17	(EA)	1.12	[1.09-1.15]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1725	chr6	149435110	149435111	rs7772697	21441570	Grassi MA	2011-03-26	Hum Mol Genet	Genome-wide meta-analysis for severe diabetic retinopathy.	Diabetic retinopathy	973 European ancestry cases, 1,856 European ancestry controls	NA	6q25.1	MAP3K7IP2, LOC729200	rs7772697-T	0.58	3E-6		1.35	[NR]	Affymetrix, Illumina [2543887] (imputed)	N
1725	chr6	149493631	149493632	rs7746208	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	6q25.1		rs7746208-A	0.33	1E-8		5.68	z score increase	Affymetrix [9061022] (imputed)	N
1725	chr6	149517933	149517934	rs77323212	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	6q25.1	NR	rs77323212-?	NR	4E-6		10667.331	NR unit decrease	Illumina [2379855]	N
1725	chr6	149518082	149518083	rs6570952	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q25.1	TAB2	rs6570952-A	0.639855	7E-9	(26 ms)	0.0342154	[0.023-0.046] unit increase	Affymetrix [10000000] (imputed)	N
1725	chr6	149518082	149518083	rs6570952	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q25.1	TAB2	rs6570952-A	0.639855	3E-8	(28 ms)	0.0321395	[0.021-0.044] unit increase	Affymetrix [10000000] (imputed)	N
1725	chr6	149525605	149525606	rs636864	17903294	Yang Q	2007-09-19	BMC Med Genet	Genome-wide association and linkage analyses of hemostatic factors and hematological phenotypes in the Framingham Heart Study.	Hemostatic factors and hematological phenotypes	Up to 1,062 European ancestry individuals	NA	6q25.1	intergenic	rs636864-?	0.21	6E-6	(RBCC)			Affymetrix [70897]	N
1725	chr6	149539772	149539773	rs2272901	28585551	Sigurdsson S	2017-06-06	Nat Commun	Sequence variants in ARHGAP15, COLQ and FAM155A associate with diverticular disease and diverticulitis.	Diverticulitis	2,764 Icelandic ancestry cases, 245,951 Icelandic ancestry controls (includes non-array genotyped, whole-genome imputed individuals)	NA	6q25.1	TAB2	rs2272901-G	0.721	6E-7		1.1904762	[1.11-1.28]	Illumina [32463443] (imputed)	N
1726	chr6	149554336	149554337	rs59110359	34026292	Juang JJ	2020-12-07	J Adv Res	Rare variants discovery by extensive whole-genome sequencing of the Han Chinese population in Taiwan: Applications to cardiovascular medicine.	Hypertension	2,936 Han Chinese ancestry cases, 7,742 Han Chinese ancestry controls	NA	6q25.1		rs59110359-?	NR	7E-6		1.376		NR [577656]	N
1726	chr6	149577078	149577079	rs7758080	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Breast cancer	17,389 European ancestry cases, 240,341 European ancestry controls, 6,325 East Asian ancestry cases, 73,225 East Asian ancestry controls	NA	6q25.1		rs7758080-G	NR	1E-10		0.0701	[0.049-0.091] unit decrease	Affymetrix, Illumina [25794640] (imputed)	N
1726	chr6	149577078	149577079	rs7758080	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	6q25.1	MAP3K7IP2	rs7758080-G	0.2694	1E-7	(EA)	1.0597305	[1.04-1.08]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1726	chr6	149577078	149577079	rs7758080	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	6q25.1	MAP3K7IP2	rs7758080-G	0.2694	7E-9	(EA)	1.0790637	[1.05-1.1]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1726	chr6	149586328	149586329	rs35409891	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6q25.1	NR	rs35409891-C	0.293	3E-9	(EA)	0.0457	[0.031-0.061] unit decrease	Illumina [~ 11800000] (imputed)	N
1726	chr6	149593919	149593920	rs727979	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	6q25.1	NR	rs727979-T	NR	3E-13		0.0245	[0.018-0.031] unit increase	Affymetrix [9000000] (imputed)	N
1726	chr6	149593919	149593920	rs727979	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	6q25.1	NR	rs727979-T	NR	3E-15		0.0264	[0.02-0.033] unit increase	Affymetrix [9000000] (imputed)	N
1726	chr6	149593919	149593920	rs727979	17903294	Yang Q	2007-09-19	BMC Med Genet	Genome-wide association and linkage analyses of hemostatic factors and hematological phenotypes in the Framingham Heart Study.	Hemostatic factors and hematological phenotypes	Up to 1,062 European ancestry individuals	NA	6q25.1	MAP3K7IP2	rs727979-?	0.14	8E-6	(RBCC)			Affymetrix [70897]	N
1726	chr6	149596373	149596374	rs9377205	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	6q25.1		rs9377205-G	NR	2E-13		0.0261	[0.019-0.033] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
1726	chr6	149608873	149608874	rs9485372	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	6q25.1		rs9485372-G	NR	8E-12		1.05	[1.03-1.06]	Affymetrix, Illumina [NR] (imputed)	N
1726	chr6	149608873	149608874	rs9485372	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6q25.1	TAB2	rs9485372-G	0.81	4E-6	(EA)	1.0416667	[1.02-1.08] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
1726	chr6	149608873	149608874	rs9485372	22383897	Long J	2012-02-23	PLoS Genet	Genome-wide association study in east Asians identifies novel susceptibility loci for breast cancer.	Breast cancer	2,918 Chinese ancestry cases, 2,324 Chinese ancestry controls	up to 16,173 East Asian ancestry cases, up to 18,282 East Asian ancestry controls	6q25.1	TAB2	rs9485372-G	0.55	4E-12		1.11	[1.09-1.15]	Affymetrix [690947]	N
1727	chr6	149714789	149714790	rs2744427	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	6q25.1	TAB2	rs2744427-?	NR	2E-8		0.0364106	[0.024-0.049] unit decrease	Illumina [4804024] (imputed)	N
1727	chr6	149729290	149729291	rs200741605	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	6q25.1	TAB2	rs200741605-C	NR	3E-8		0.0169494	[0.011-0.023] unit increase	Affymetrix [321788] (imputed)	N
1727	chr6	149729290	149729291	rs200741605	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6q25.1	TAB2	rs200741605-C	NR	2E-8		0.016666	[0.011-0.022] unit increase	Affymetrix [321016] (imputed)	N
1727	chr6	149755694	149755695	rs2153219	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	6q25.1	intergenic	rs2153219-A	0.8347	7E-7		0.0429	[0.026-0.06] unit increase	NR [8041861] (imputed)	N
1727	chr6	149762536	149762537	rs2179367	21732829	Dolmans GH	2011-07-06	N Engl J Med	Wnt signaling and Dupuytren's disease.	Dupuytren's disease	856 European ancestry cases, 2,836 European ancestry controls	1,298 European ancestry cases, 7,136 European ancestry controls	6q25.1	ZC3H12D, TAB2	rs2179367-G	0.42	3E-7		1.23	[1.14-1.32]	Illumina [234939]	N
1727	chr6	149786489	149786492	rs768512669	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	6q25.1	ZC3H12D	rs768512669-C	0.367548	3E-9		1.0376698	[1.02503839469497-1.05045675241734]	NR [9572556] (imputed)	N
1727	chr6	149787377	149787378	rs431362	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	6q25.1	ZC3H12D	rs431362-A	0.36	2E-10				NR [> 9500000] (imputed)	N
1727	chr6	149792999	149793000	rs431978	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	6q25.1		rs431978-?	NR	6E-11				NR [~ 8900000] (imputed)	N
1727	chr6	149795135	149795136	rs391875	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	6q25.1	ZC3H12D	rs391875-A	0.40466	2E-11		0.015181269	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1727	chr6	149795135	149795136	rs391875	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6q25.1	ZC3H12D	rs391875-A	0.404634	1E-9		0.013611254	[0.0092-0.018] unit increase	Affymetrix [93095623] (imputed)	N
1727	chr6	149796919	149796919	rs11462350	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	6q25.1	NR	rs11462350-I	0.404195	7E-11		0.013684	[0.0096-0.0178] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
1727	chr6	149797013	149797014	rs394563	28886342	Ng M	2017-09-07	Am J Hum Genet	A Genome-wide Association Study of Dupuytren Disease Reveals 17 Additional Variants Implicated in Fibrosis.	Dupuytren's disease	3,871 European ancestry cases, 4,686 European ancestry controls	4,041 European and unknown ancestry cases, 8,251 European and unknown ancestry controls	6q25.1	ZC3H12D, TAB2, SUMO4	rs394563-?	0.589	1E-17		1.2077295	[1.16-1.26]	Illumina [238825]	N
1728	chr6	149834573	149834574	rs9373594	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	6q25.1	PPIL4	rs9373594-T	NR	7E-7		0.0949502	[0.042-0.148] unit increase	Illumina [8380626] (imputed)	N
1728	chr6	149834573	149834574	rs9373594	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	6q25.1	PPIL4	rs9373594-T	0.34	5E-6	(East Asian)	0.12164	[0.069-0.174] unit increase	Illumina [8380626] (imputed)	N
1728	chr6	149834573	149834574	rs9373594	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	6q25.1	PPIL4	rs9373594-T	0.63	3E-9		1.09	[1.06-1.12]	Affymetrix, Illumina [up to 9739303] (imputed)	N
1728	chr6	149834573	149834574	rs9373594	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	6q25.1	PPIL4	rs9373594-T	0.33	5E-8	(East Asian)	1.11	[1.07-1.15]	Affymetrix, Illumina [up to 9739303] (imputed)	N
1728	chr6	149904293	149904294	rs190019281	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Hyperopia	10,828 European ancestry hyperopia cases, 21,416 European ancestry emmetropia controls	NA	6q25.1	NR	rs190019281-?	NR	9E-7		0.566012	[0.34-0.79] unit increase	NR [13958389] (imputed)	N
1728	chr6	149913866	149913867	rs11155662	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	6q25.1		rs11155662-G	0.34	2E-9		5.97	z score increase	Affymetrix [9061022] (imputed)	N
1728	chr6	149919142	149919143	rs9322193	27393504	Zanetti KA	2016-05-13	Lung Cancer	Genome-wide association study confirms lung cancer susceptibility loci on chromosomes 5p15 and 15q25 in an African-American population.	Lung cancer	1,737 African American cases, 3,602 African American controls	866 African American cases, 796  African American controls	6q25.1	C6orf72, KATNA1	rs9322193-?	NR	1E-7		1.2508	[1.1508-1.3596]	Illumina [1024001]	N
1728	chr6	149920248	149920249	rs9322194	31636452	Satizabal CL	2019-10-21	Nat Genet	Genetic architecture of subcortical brain structures in 38,851 individuals.	Brainstem volume	28,809 European ancestry individuals	341 South East and East Asian ancestry individuals, 85 African American individuals	6q25.1	NR	rs9322194-T	0.3431	2E-11		6.71	NR z score increase	Affymetrix, Illumina [NR] (imputed)	N
1729	chr6	149971763	149971766	rs202138115	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	6q25.1	NR	rs202138115-?	NR	5E-11	(right hippocampus)			NR [9227495] (imputed)	N
1729	chr6	149972131	149972132	rs11155671	28604728	Litchfield K	2017-06-12	Nat Genet	Identification of 19 new risk loci and potential regulatory mechanisms influencing susceptibility to testicular germ cell tumor.	Testicular germ cell tumor	5,518 European ancestry cases, 19,055 European ancestry controls	1,801 European ancestry cases, 4,027 European ancestry controls	6q25.1	KATNA1, LATS1	rs11155671-G	0.66	2E-9		1.15	[1.10-1.20]	Illumina [at least 371504] (imputed)	N
1729	chr6	149973763	149973764	rs12523793	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	6q25.1	MARCH4, SMARCAL1, RPL37A	rs12523793-?		4E-24				NR [7428630] (imputed)	N
1729	chr6	149979415	149979416	rs1125	30287806	Zhou H	2018-10-04	Transl Psychiatry	Genome-wide association study identifies glutamate ionotropic receptor GRIA4 as a risk gene for comorbid nicotine dependence and major depression.	Nicotine dependence and major depression (severity of comorbidity)	3,724 African American individuals	NA	6q25.1	LATS1	rs1125-G	0.1939	4E-6		0.6324	[0.36-0.9] unit decrease	Illumina [9520174] (imputed)	N
1729	chr6	149989744	149989745	rs35989414	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	6q25.1		rs35989414-A	NR	9E-9		0.0146	[0.0097-0.0195] unit decrease	Affymetrix, Illumina [20529698] (imputed)	N
1729	chr6	149996840	149996841	rs34337297	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LRP11	5,367 Icelandic ancestry individuals	NA	6q25.1		rs34337297-C	0.3261	3E-161		0.496119	[0.46-0.53] unit increase	Illumina [7506463] (imputed)	N
1729	chr6	149999221	149999222	rs4380763	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (min-P)	26,502 European ancestry individuals	NA	6q25.1	RALGPS2, ANGPTL1	rs4380763-?		1E-11				NR [7428630] (imputed)	N
1729	chr6	150004026	150004027	rs4421206	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (min-P)	26,502 European ancestry individuals	NA	6q25.1	THADA, ZFP36L2, PLEKHH2	rs4421206-?		4E-11				NR [7428630] (imputed)	N
1729	chr6	150050675	150050676	rs12526675	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	6q25.1	PPIL4, GINM1, KATNA1, LATS1, NUP43, PCMT1, LRP11, RAET1E, RAET1G	rs12526675-?		7E-22				NR [7428630] (imputed)	N
1729	chr6	150052077	150052077	rs149014510	34387878	Kim KY	2021-08-13	Hepatology	Genome-wide association of individual vulnerability with alcoholic liver disease: A Korean Genome and Epidemiology Study.	Alcohol-associated liver disease in non drinkers	782 Korean ancestry cases, 18,058 Korean ancestry controls	NA	6q25.1		rs149014510-?	NR	9E-6		1.281	[1.148-1.43]	Affymetrix [7975321] (imputed)	N
1729	chr6	150063975	150063976	rs10872645	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6q25.1	LRP11	rs10872645-A	0.3290625	2E-86	(LRP11, 8330_1_3)	0.48968822	[0.44-0.54] unit increase	Illumina [> 1000000] (imputed)	N
1729	chr6	150064018	150064019	rs11155675	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	6q25.1	NR	rs11155675-?	NR	3E-9	(left hippocampus)			NR [9227495] (imputed)	N
1730	chr6	150084183	150084184	rs539700294	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	6q25.1		rs539700294-A	0.34	5E-13		7.24	z score increase	Affymetrix [9061022] (imputed)	N
1730	chr6	150084183	150084184	rs539700294	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	6q25.1	NR	rs539700294-A	0.3236	3E-11				NR [9056863] (imputed)	N
1730	chr6	150095096	150095097	rs116912868	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LRP11	5,367 Icelandic ancestry individuals	NA	6q25.1		rs116912868-C	0.01582	8E-38		0.926646	[0.79-1.07] unit increase	Illumina [7506463] (imputed)	N
1730	chr6	150107247	150107248	rs12178835	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 116)	19,670 European ancestry individuals	NA	6q25.1		rs12178835-?	NR	1E-10				NR [9705931] (imputed)	N
1730	chr6	150128172	150128173	rs2095375	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	6q25.1	PCMT1	rs2095375-C	0.363022	1E-20	(S-adenosylhomocysteine (SAH))	0.215	[0.17-0.26] unit decrease	Illumina [13039987] (imputed)	N
1730	chr6	150128172	150128173	rs2095375	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	1,509 European ancestry individuals	6q25.1	PCMT1	rs2095375-C	0.363022	1E-20	(S-adenosylhomocysteine (SAH))	0.215	[0.17-0.26] unit decrease	Illumina [13039987] (imputed)	N
1730	chr6	150141530	150141531	rs14314	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	6q25.1		rs14314-C	0.37	7E-17		8.35	z score increase	Affymetrix [9061022] (imputed)	N
1730	chr6	150141530	150141531	rs14314	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	6q25.1	LRP11	rs14314-?	NR	3E-19		0.615	[0.47-0.76] unit decrease	Affymetrix [11100000] (imputed)	N
1730	chr6	150145000	150145001	rs9371201	30287806	Zhou H	2018-10-04	Transl Psychiatry	Genome-wide association study identifies glutamate ionotropic receptor GRIA4 as a risk gene for comorbid nicotine dependence and major depression.	Nicotine dependence and major depression (severity of comorbidity)	3,724 African American individuals	NA	6q25.1	LRP11	rs9371201-T	0.8078	7E-6		0.6236	[0.35-0.89] unit increase	Illumina [9520174] (imputed)	N
1730	chr6	150151499	150151500	rs1475756	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		AL355312.5	rs1475756-?	NR	5E-9	(female)	0.417714	[NR] unit increase	Affymetrix [NR] (imputed)	N
1730	chr6	150156203	150156204	rs2342764	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	6q25.1	NR	rs2342764-A	0.351	1E-8				NR [9056863] (imputed)	N
1730	chr6	150157344	150157345	rs72995588	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial squamous cell lung carcinoma	367 European ancestry cases, 31,563 European ancestry controls	NA	6q25.1	LRP11	rs72995588-A	0.021	4E-6		3.91	[2.19-6.97]	Illumina [7959153] (imputed)	N
1731	chr6	150210680	150210681	rs9371533	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6q25.1	LRP11	rs9371533-A	0.3759375	4E-286	(LRP11, 6713_4_3)	0.8253432	[0.79-0.87] unit increase	Illumina [> 1000000] (imputed)	N
1731	chr6	150212002	150212003	rs9383583	35215271	Almandil NB	2022-01-27	Pharmaceuticals (Basel)	Integration of Transcriptome and Exome Genotyping Identifies Significant Variants with Autism Spectrum Disorder.	Autism spectrum disorder	70 Arab ancestry cases, 132 Arab ancestry controls	NA	6q25.1	NA	rs9383583-T	0.2898	2E-7		0.1395	[0.06093-0.3193]	Illumina [243345]	N
1731	chr6	150241208	150241209	rs75353579	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		RAET1G	rs75353579-?	NR	1E-8	(female)	0.415362	[NR] unit increase	Affymetrix [NR] (imputed)	N
1731	chr6	150289706	150289707	rs4870163	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	6q25.1		rs4870163-T	NR	7E-10		0.0176	[0.012-0.023] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1731	chr6	150298841	150298842	rs1853665	31320639	Hillary RF	2019-07-18	Nat Commun	Genome and epigenome wide studies of neurological protein biomarkers in the Lothian Birth Cohort 1936.	Neurological blood protein biomarker levels	750 European ancestry individuals	NA	6q25.1	ULBP2	rs1853665-T	0.1741	5E-11	(N2DL2)	0.59916	[0.4-0.8] unit decrease	Illumina [8683751] (imputed)	N
1731	chr6	150298841	150298842	rs1853665	20923822	Niu N	2010-10-05	Genome Res	Radiation pharmacogenomics: a genome-wide association approach to identify radiation response biomarkers using human lymphoblastoid cell lines.	Radiation response	93 African American human lymphoblastoid cell lines, 89 European ancestry human lymphoblastoid cell lines, 95 Han Chinese ancestry human lymphoblastoid cell lines	NA	6q25.1	ULBP1	rs1853665-?	0.34	7E-6				Affymetrix, Illumina [1348798]	N
1731	chr6	150300963	150300964	rs6909158	29679657	Ferreira MA	2018-04-18	J Allergy Clin Immunol	Eleven loci with new reproducible genetic associations with allergic disease risk.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	6q25.1	NUP43	rs6909158-T	0.8078	7E-6	(conditional)	0.0297268	NR unit decrease	NR [NR]	N
1731	chr6	150302347	150302348	rs4869780	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	6q25.1		rs4869780-A	0.373465	1E-9		0.0208324	[0.014-0.028] unit increase	Illumina [13478928] (imputed)	N
1731	chr6	150302347	150302348	rs4869780	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	6q25.1		rs4869780-A	NR	6E-9		0.0142	[0.0095-0.0189] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
1731	chr6	150302347	150302348	rs4869780	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	150,068 East Asian ancestry individuals	NA	6q25.1		rs4869780-A	0.373066	3E-9		0.0213219	[0.014-0.028] unit decrease	Illumina [13478956] (imputed)	N
1731	chr6	150316009	150316010	rs138328529	31504550	Bradfield JP	2019-07-05	Hum Mol Genet	A Trans-ancestral Meta-Analysis of Genome-Wide Association Studies Reveals Loci Associated with Childhood Obesity.	Childhood obesity	8,613 European ancestry cases, 3,213 African American cases, 69 Moroccan ancestry cases, 986 Hispanic/Latino cases, 124 East Asian ancestry cases, 12,696 European ancestry controls, 1,392 African American controls, 64 Moroccan ancestry controls, 993 Hispanic/Latino controls, 454 East Asian ancestry controls	NA	6q25.1	NR	rs138328529-T	NR	7E-6	(African)	0.5595	[0.32-0.8] unit decrease	Affymetrix, Illumina [up to 15123508] (imputed)	N
1732	chr6	150353555	150353556	rs12205199	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Keratinocyte cancer (MTAG)	at least 18,538 European ancestry cases, at least 340,302 European ancestry controls	NA	6q25.1	RAET1M	rs12205199-A	NR	2E-7		1.0416667	[1.03-1.06]	Affymetrix [7600000] (imputed)	N
1732	chr6	150353555	150353556	rs12205199	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Basal cell carcinoma	31,787 European ancestry cases, 619,351 European ancestry controls	NA	6q25.1	RAET1M	rs12205199-A	0.431398	1E-8		1.05	[1.03-1.07]	Affymetrix, Illumina [up to 9061544] (imputed)	N
1732	chr6	150358011	150358012	rs9479482	20596022	Petukhova L	2010-07-01	Nature	Genome-wide association study in alopecia areata implicates both innate and adaptive immunity.	Alopecia areata	Up to 1,054 European ancestry cases, 3,278 European ancestry controls	NA	6q25.1	ULBP3, ULBP6	rs9479482-A	0.57	4E-19		1.65	[1.48-1.83]	Illumina [463301]	N
1732	chr6	150361355	150361356	rs73001674	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (hospitalized covid vs population)	613 European ancestry cases, 680,416 European ancestry controls, 140 Hispanic or Latin American cases, 94,327 Hispanic or Latin American controls, 49 Black or African American cases, 22,410 Black or African American controls	NA	6q25.1		rs73001674-?	NR	5E-6		0.2518505	[0.14-0.36] unit decrease	Illumina [9875426] (imputed)	N
1732	chr6	150368324	150368325	rs77295064	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	6q25.1	Intergenic	rs77295064-T	0.988	2E-6	(AA)	0.439	NR unit increase	Illumina [NR] (imputed)	N
1732	chr6	150370551	150370552	rs17054300	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6q25.1	NR	rs17054300-G	0.7615625	7E-9	(LRP11, 6713_4_3)	0.16435514	[0.11-0.22] unit increase	Illumina [> 1000000] (imputed)	N
1732	chr6	150370551	150370552	rs17054300	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6q25.1	NR	rs17054300-G	0.7615625	2E-9	(ULBP3, 2747_3_2)	0.17125893	[0.12-0.23] unit increase	Illumina [> 1000000] (imputed)	N
1732	chr6	150373193	150373194	rs10428766	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	6q25.1		rs10428766-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1732	chr6	150373958	150373959	rs12203612	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6q25.1		rs12203612-?	NR	5E-6		0.946562	[0.92-0.97]	NR [685523]	N
1732	chr6	150380883	150380884	rs78546022	23319000	Luykx JJ	2013-01-15	Mol Psychiatry	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA/5-HIAA ratio)	up to 398 European ancestry individuals	NA	6q25.1	ULBP3	rs78546022-G		4E-6		0.2221	unit increase	Illumina [5767231] (imputed)	N
1732	chr6	150421687	150421688	rs13207159	34020725	Reddy JS	2021-05-21	Acta Neuropathol Commun	Genome-wide analysis identifies a novel LINC-PINT splice variant associated with vascular amyloid pathology in Alzheimer's disease.	Cerebral amyloid angiopathy x APOEe4 status interaction in Alzheimer's disease	534 European ancestry APOEe4 carriers, 287 European ancestry APOEe4 non-carriers	NA	6q25.1	ULBP3	rs13207159-A	0.25	5E-7				Illumina [1679420] (imputed)	N
1732	chr6	150421687	150421688	rs13207159	34020725	Reddy JS	2021-05-21	Acta Neuropathol Commun	Genome-wide analysis identifies a novel LINC-PINT splice variant associated with vascular amyloid pathology in Alzheimer's disease.	Cerebral amyloid angiopathy in APOEe4 non-carrier Alzheimer's disease	287 European ancestry individuals	NA	6q25.1	ULBP3	rs13207159-A	0.25	4E-6		0.19	[0.11-0.28] unit increase	Illumina [1679420] (imputed)	N
1732	chr6	150461711	150461712	rs73605924	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6q25.1	NR	rs73605924-G	0.122	1E-6	(IFNalpha_CXCL10_of_Monocytes)			Illumina [5084123] (imputed)	N
1732	chr6	150461803	150461804	rs74463826	34020725	Reddy JS	2021-05-21	Acta Neuropathol Commun	Genome-wide analysis identifies a novel LINC-PINT splice variant associated with vascular amyloid pathology in Alzheimer's disease.	Cerebral amyloid angiopathy in Alzheimer's disease	821 European ancestry individuals	NA		PPP1R14C	rs74463826-T	0.07	6E-6		0.18	[0.1-0.26] unit decrease	Illumina [1679420] (imputed)	N
1733	chr6	150492055	150492056	rs6925743	31220337	Carr DF	2019-06-20	Clin Pharmacol Ther	Genome-wide association study of statin-induced myopathy in patients recruited using the UK clinical practice research datalink.	Atorvastatin-induced myopathy	28 European ancestry cases, 2,501 controls	NA	6q25.1	PPP1R14C	rs6925743-?	NR	9E-7		5.263158	[2.17-12.5]	Illumina [654642] (imputed)	N
1733	chr6	150496241	150496242	rs6902063	29206233	Shendre A	2017-12-04	PLoS One	Genome-wide admixture and association study of subclinical atherosclerosis in the Women's Interagency HIV Study (WIHS).	Common carotid intima-media thickness	682 Black non-Hispanic HIV-positive women, 288 Black non-Hispanic HIV-negative women	NA	6q25.1	PPP1R14C	rs6902063-G	NR	4E-6		0.01178	[NR] unit decrease	Illumina [1124301]	N
1733	chr6	150505704	150505705	rs2144400	29855589	Chernus J	2018-05-31	Sci Rep	GWAS reveals loci associated with velopharyngeal dysfunction.	Velopharyngeal dysfunction	54 Hispanic or Latin American and unknown ancestry cases, 922 Hispanic or Latin American and unknown ancestry controls	NA	6q25.1	NR	rs2144400-?	NR	5E-6		0.08458472	[NR] unit decrease	Illumina [at least 269494] (imputed)	N
1733	chr6	150519174	150519175	rs76165228	30093612	O'Mara TA	2018-08-09	Nat Commun	Identification of nine new susceptibility loci for endometrial cancer.	Endometrial cancer (endometrioid histology)	8,758 European ancestry cases, 46,126 European ancestry controls	NA	6q25.1	PPP1R14C	rs76165228-A	0.14097899999999997	9E-8		1.15	[1.09-1.21]	Affymetrix, Illumina [~ 11700000] (imputed)	N
1733	chr6	150519174	150519175	rs76165228	30093612	O'Mara TA	2018-08-09	Nat Commun	Identification of nine new susceptibility loci for endometrial cancer.	Endometrial cancer	12,906 European ancestry cases, 108,979 European ancestry controls	NA	6q25.1	PPP1R14C	rs76165228-A	0.14	6E-6		1.11	[1.06-1.16]	Affymetrix, Illumina [~ 11700000] (imputed)	N
1733	chr6	150561017	150561018	rs9383739	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Hyperopia	10,828 European ancestry hyperopia cases, 21,416 European ancestry emmetropia controls	NA	6q25.1	NR	rs9383739-?	NR	1E-6		0.209093	[0.12-0.29] unit increase	NR [13958389] (imputed)	N
1733	chr6	150570866	150570867	rs3734729	23284291	Hancock DB	2012-12-20	PLoS Genet	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (smoking interaction)	50,047 European ancestry individuals	NA	6q25.1	PPP1R1	rs3734729-A	NR	7E-7	(FEV1, Pack-years)			NR [~ 2500000] (imputed)	N
1733	chr6	150570866	150570867	rs3734729	23284291	Hancock DB	2012-12-20	PLoS Genet	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (smoking interaction)	50,047 European ancestry individuals	NA	6q25.1	PPP1R1	rs3734729-A	NR	4E-7	(FEV1, Ever-smoking)			NR [~ 2500000] (imputed)	N
1733	chr6	150570866	150570867	rs3734729	21946350	Soler Artigas M	2011-09-25	Nat Genet	Genome-wide association and large-scale follow up identifies 16 new loci influencing lung function.	Pulmonary function	48,201 European ancestry individuals	46,411 European ancestry individuals	6q25.1	PPP1R14C	rs3734729-G	NR	4E-6	(FEV1)	0.055	[0.031-0.079] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1733	chr6	150601040	150601041	rs9384331	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	6q25.1	intergenic	rs9384331-?	NR	3E-7		0.283	[0.17-0.4] unit decrease	Illumina [at least 13000000] (imputed)	N
1734	chr6	150651899	150651900	rs1591830	19043545	Gieger C	2008-11-28	PLoS Genet	Genetics meets metabolomics: a genome-wide association study of metabolite profiles in human serum.	Metabolite levels	284 European ancestry male individuals	NA	6q25.1	C6orf71	rs1591830-?	0.32	1E-7	(sugar)			Affymetrix [187454]	N
1734	chr6	150702846	150702847	rs670292	24489884	Mick E	2014-01-01	PLoS One	Genome-wide association study of proneness to anger.	Anger	8,747 European ancestry individuals	NA	6q25.1	IYD	rs670292-C	0.466	2E-6	(Temperament)	0.13	[NR] unit increase	Affymetrix [677643]	N
1735	chr6	150744836	150744837	rs4869908	25461247	Lehmann DS	2015-02-01	Pharmacogenet Genomics	Genome-wide association study of virologic response with efavirenz-containing or abacavir-containing regimens in AIDS clinical trials group protocols.	Response to abacavir-containing treatment in HIV-1 infection (virologic failure)	Up 346 European ancestry individuals, Up to 265 Black individuals, Up to 175 Hispanic individuals	NA	6q25.1	NR	rs4869908-G	NR	8E-6	(phenotype 1)	2.5	[NR]	Illumina [> 8000000] (imputed)	N
1736	chr6	150912872	150912873	rs6907316	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	6q25.1		rs6907316-A	0.43	2E-14		7.65	z score increase	Affymetrix [9061022] (imputed)	N
1736	chr6	150913527	150913528	rs9397338	32635940	Nudel R	2020-07-07	BMC Neurosci	Quantitative genome-wide association analyses of receptive language in the Danish High Risk and Resilience Study.	Parent of origin effect on receptive language ability (maternal)	400 European ancestry children	NA	6q25.1	intergenic	rs9397338-G	NR	8E-6		9.95	NR unit decrease	Illumina [up to 299604]	N
1736	chr6	150913960	150913961	rs9372078	19165232	Otowa T	2009-01-23	J Hum Genet	Genome-wide association study of panic disorder in the Japanese population.	Panic disorder	200 Japanese ancestry cases, 200 Japanese ancestry controls	NA	6q25.1	PLEKHG1	rs9372078-?	0.11	5E-7				Affymetrix [253903]	N
1736	chr6	150973622	150973623	rs144224092	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	6q25.1	PLEKHG1	rs144224092-?		3E-6	(heterogeneous)	0.44	[0.26-0.62] unit increase	Illumina [1492601] (imputed)	N
1736	chr6	150973622	150973623	rs144224092	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	6q25.1	PLEKHG1	rs144224092-?		3E-6	(additive)	0.427	[0.25-0.61] unit increase	Illumina [1492601] (imputed)	N
1736	chr6	150973622	150973623	rs144224092	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	6q25.1	PLEKHG1	rs144224092-?		2E-6	(dominant)	0.44	[NR] unit increase	Illumina [1492601] (imputed)	N
1736	chr6	150975311	150975312	rs62434109	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	6q25.1		rs62434109-?	NR	3E-21				NR [~ 8900000] (imputed)	N
1736	chr6	150975311	150975312	rs62434109	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption (light vs heavy) interaction (2df test)	12,758 European ancestry heavy drinkers, 1,326 African American or Afro-Caribbean heavy drinkers, 648 Asian ancestry heavy drinkers, 364 Hispanic or Latin American heavy drinkers, 43,947 European ancestry light drinkers, 8,239 African American or Afro-Caribbean light drinkers, 1,141 Asian ancestry light drinkers, 4,448 Hispanic or Latin American light drinkers	42,078 European ancestry heavy drinkers, 217 African American heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic heavy drinkers, 74,706 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	6q25.1	PLEKHG1	rs62434109-T	0.94	1E-10	(Asian, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1736	chr6	150975311	150975312	rs62434109	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption (light vs heavy) interaction (2df test)	12,758 European ancestry heavy drinkers, 1,326 African American or Afro-Caribbean heavy drinkers, 648 Asian ancestry heavy drinkers, 364 Hispanic or Latin American heavy drinkers, 43,947 European ancestry light drinkers, 8,239 African American or Afro-Caribbean light drinkers, 1,141 Asian ancestry light drinkers, 4,448 Hispanic or Latin American light drinkers	42,079 European ancestry heavy drinkers, 217 African American or Afro-Caribbean heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic ancestry heavy drinkers, 74,757 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	6q25.1	PLEKHG1	rs62434109-T	0.94	4E-12	(Asian, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1736	chr6	150977957	150977958	rs62434111	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption (light vs heavy) interaction (2df test)	56,705 European ancestry heavy and light drinkers, 9,725 African American or Afro-Caribbean heavy and light drinkers, 1,789 Asian ancestry heavy and light drinkers, 4,812 Hispanic or Latin American heavy and light drinkers	42,077 European ancestry heavy drinkers, 217 African American heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic ancestry heavy drinkers, 74,701 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	6q25.1	PLEKHG1	rs62434111-A	0.06	9E-14	(Asian, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1736	chr6	150980285	150980289	rs541705173	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	6q25.1		rs541705173-C	NR	2E-8		0.0312	[0.02-0.042] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
1736	chr6	150980287	150980289	rs57253908	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	6q25.1	PLEKHG1	rs57253908-C	0.062222	6E-11		0.030726755	[0.022-0.04] unit increase	Affymetrix [93095623] (imputed)	N
1736	chr6	150984740	150984741	rs113397083	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	6q25.1		rs113397083-A	NR	5E-10		0.0264	[0.018-0.035] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1736	chr6	150984740	150984741	rs113397083	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	6q25.1	PLEKHG1	rs113397083-A	0.0827	5E-16		0.5177	[0.39-0.64] mmHg decrease	Affymetrix [NR] (imputed)	N
1736	chr6	150989697	150989698	rs17080069	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	6q25.1		rs17080069-G	NR	6E-14		0.0302	[0.022-0.038] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
1736	chr6	150989697	150989698	rs17080069	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	6q25.1		rs17080069-G	NR	1E-8		0.0238	[0.016-0.032] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
1736	chr6	150992369	150992370	rs62434120	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q25.1	NR	rs62434120-T	0.925923	3E-15				Affymetrix, Illumina [22063850] (imputed)	N
1736	chr6	150992369	150992370	rs62434120	28498854	Liang J	2017-05-12	PLoS Genet	Single-trait and multi-trait genome-wide association analyses identify novel loci for blood pressure in African-ancestry populations.	Systolic blood pressure	Up to 31,155 African individuals	Up to 4,187 African individuals, up to 14,016 Korean ancestry individuals, up to 23,914 European ancestry individuals, up to 12,278 Hispanic individuals	6q25.1	PLEKHG1	rs62434120-T	NR	6E-9		0.9925	[0.65-1.33] unit decrease	Affymetrix, Illumina [at least 30072738] (imputed)	N
1736	chr6	150992369	150992370	rs62434120	28498854	Liang J	2017-05-12	PLoS Genet	Single-trait and multi-trait genome-wide association analyses identify novel loci for blood pressure in African-ancestry populations.	Diastolic blood pressure	Up to 31,155 African individuals	Up to 4,187 African individuals, up to 14,016 Korean ancestry individuals, up to 23,914 European ancestry individuals, up to 12,278 Hispanic individuals	6q25.1	PLEKHG1	rs62434120-T	NR	3E-7		0.5734	[0.36-0.79] unit decrease	Affymetrix, Illumina [at least 30072738] (imputed)	N
1736	chr6	150992369	150992370	rs62434120	28498854	Liang J	2017-05-12	PLoS Genet	Single-trait and multi-trait genome-wide association analyses identify novel loci for blood pressure in African-ancestry populations.	Blood pressure traits (multi-trait analysis)	Up to 31,155 African individuals	Up to 4,187 African individuals, up to 14,016 Korean ancestry individuals, up to 23,914 European ancestry individuals, up to 12,278 Hispanic individuals	6q25.1	PLEKHG1	rs62434120-T	NR	5E-7	(Hom)			Affymetrix, Illumina [at least 30072738] (imputed)	N
1737	chr6	150997268	150997269	rs17080089	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls	NA	6q25.1	PLEKHG1	rs17080089-G	0.0716652	3E-12		0.10666939	[0.077-0.137] unit decrease	Affymetrix [7288503] (imputed)	N
1737	chr6	150997400	150997401	rs17080091	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Waist-hip ratio and systolic blood pressure (pairwise)	365,450 European ancestry individuals, 11,333 East Asian, South Asian, Hispanic and African American ancestry individuals	NA	6q25.1	PLEKHG1	rs17080091-T	0.0716	5E-10				Affymetrix, Illumina [2331072] (imputed)	N
1737	chr6	150997400	150997401	rs17080091	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	6q25.1	PLEKHG1	rs17080091-C	0.923489	3E-7		1.07	[1.04-1.10]	NR [8126035] (imputed)	N
1737	chr6	150997400	150997401	rs17080091	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	6q25.1	NR	rs17080091-T	0.070257	5E-10		0.022358	[0.015-0.029] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
1737	chr6	150997400	150997401	rs17080091	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	6q25.1	PLEKHG1	rs17080091-T	0.0839	6E-9		0.0537	[0.036-0.072] unit decrease	Affymetrix [at least 7947838] (imputed)	N
1737	chr6	150997439	150997440	rs17080093	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Systolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	6q25.1	PLEKHG1	rs17080093-T	0.075	4E-7		0.564	[0.35-0.78] mm Hg decrease	Affymetrix, Illumina, Perlegen [128272]	N
1737	chr6	150997439	150997440	rs17080093	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Diastolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	6q25.1	PLEKHG1	rs17080093-T	0.075	2E-9		0.411	[0.28-0.54] mm Hg decrease	Affymetrix, Illumina, Perlegen [128272]	N
1737	chr6	150998510	150998511	rs57139556	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	6q25.1		rs57139556-G	NR	6E-17		0.0764	[0.059-0.094] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1737	chr6	150998510	150998511	rs57139556	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	6q25.1	PLEKHG1	rs57139556-G	0.070976	2E-14		0.09007257	[0.067-0.113] unit decrease	Affymetrix [7288503] (imputed)	N
1737	chr6	150999070	150999071	rs62434122	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	6q25.1	NR	rs62434122-G	0.929208	3E-12		0.025464	[0.018-0.033] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
1737	chr6	150999463	150999464	rs62434123	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls	NA	6q25.1	PLEKHG1	rs62434123-T	0.0713639	7E-9		0.09045978	[0.06-0.121] unit decrease	Affymetrix [7288503] (imputed)	N
1737	chr6	151002370	151002371	rs62434125	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls, 22,356 East Asian ancestry cases, 156,370 East Asian ancestry controls	NA	6q25.1		rs62434125-C	NR	2E-13		0.1014	[0.074-0.128] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1737	chr6	151002370	151002371	rs62434125	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls, 20,367 East Asian ancestry cases, 158,359 East Asian ancestry controls	NA	6q25.1		rs62434125-C	NR	2E-8		0.0819	[0.053-0.11] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1737	chr6	151003839	151003840	rs12663498	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	6q25.1	PLEKHG1	rs12663498-T	0.091	1E-9		0.0591	[0.04-0.078] unit decrease	NR [8041861] (imputed)	N
1737	chr6	151004769	151004770	rs17080102	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Systolic blood pressure	11,380 African American individuals, 21,549 Hispanic/Latino individuals, 1,086 Asian ancestry individuals, 636 Native American ancestry individuals, 782 individuals	NA	6q25.1	NR	rs17080102-?	NR	1E-6		1.045662	[0.62-1.47] unit decrease	Illumina [32101933] (imputed)	N
1737	chr6	151004769	151004770	rs17080102	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Diastolic blood pressure	11,380 African American individuals, 21,549 Hispanic/Latino individuals, 1,086 Asian ancestry individuals, 636 Native American ancestry individuals, 782 individuals	NA	6q25.1	NR	rs17080102-?	NR	2E-6		0.6605728	[0.39-0.93] unit decrease	Illumina [32101933] (imputed)	N
1737	chr6	151004769	151004770	rs17080102	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	6q25.1		rs17080102-?	NR	4E-35				NR [~ 8900000] (imputed)	N
1737	chr6	151004769	151004770	rs17080102	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure (cigarette smoking interaction)	80,552 European ancestry individuals, 27,118 African individuals, 13,438 Asian individuals, 8,805 Hispanic individuals	305,513 European ancestry individuals, 7,786 African individuals, 148,932 Asian individuals, 13,533 Hispanic individuals, 4,414 Brazilian individuals	6q25.1	PLEKHG1	rs17080102-?	NR	3E-22				Affymetrix, Illumina [18800000] (imputed)	N
1737	chr6	151004769	151004770	rs17080102	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure (cigarette smoking interaction)	80,552 European ancestry individuals, 27,118 African individuals, 13,438 Asian individuals, 8,805 Hispanic individuals	305,513 European ancestry individuals, 7,786 African individuals, 148,932 Asian individuals, 13,533 Hispanic individuals, 4,414 Brazilian individuals	6q25.1	PLEKHG1	rs17080102-?		1E-28				Affymetrix, Illumina [18800000] (imputed)	N
1737	chr6	151004769	151004770	rs17080102	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Systolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	6q25.1	PLEKHG1	rs17080102-C	0.066	9E-7	(EA, initial)	0.709	[0.43-0.99] unit decrease	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
1737	chr6	151004769	151004770	rs17080102	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Diastolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	6q25.1	PLEKHG1	rs17080102-C	0.066	1E-10	(EA, initial)	0.57	[0.4-0.74] unit decrease	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
1737	chr6	151004769	151004770	rs17080102	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	6q25.1	PLEKHG1	rs17080102-G		6E-6	(EA)	0.54	unit increase	Affymetrix [at least 2696785] (imputed)	N
1737	chr6	151004769	151004770	rs17080102	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	6q25.1	PLEKHG1	rs17080102-G		3E-6		0.484	unit increase	Affymetrix [at least 2696785] (imputed)	N
1737	chr6	151004769	151004770	rs17080102	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	6q25.1	PLEKHG1	rs17080102-G		5E-16		0.593	unit increase	Affymetrix [at least 2696785] (imputed)	N
1737	chr6	151004769	151004770	rs17080102	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	6q25.1	PLEKHG1	rs17080102-G		3E-7	(EA)	0.394	unit increase	Affymetrix [at least 2696785] (imputed)	N
1737	chr6	151004769	151004770	rs17080102	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	6q25.1	PLEKHG1	rs17080102-G		1E-6		0.331	unit increase	Affymetrix [at least 2696785] (imputed)	N
1737	chr6	151004769	151004770	rs17080102	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	6q25.1	PLEKHG1	rs17080102-G		1E-18		0.395	unit increase	Affymetrix [at least 2696785] (imputed)	N
1737	chr6	151004769	151004770	rs17080102	23972371	Franceschini N	2013-08-20	Am J Hum Genet	Genome-wide association analysis of blood-pressure traits in African-ancestry individuals reveals common associated genes in African and non-African populations.	Blood pressure	28,190 African American individuals, 1,188 Nigerian ancestry individuals	69,395 European ancestry individuals, 5,266 African American individuals, 6,497 African ancestry individuals, 19,601 East Asian ancestry individuals	6q25.1	PLEKHG1	rs17080102-C	0.1	5E-8	(SBP)	1.02	[0.53-1.51] unit decrease	Affymetrix, Illumina [~ 2420000] (imputed)	N
1737	chr6	151004769	151004770	rs17080102	23972371	Franceschini N	2013-08-20	Am J Hum Genet	Genome-wide association analysis of blood-pressure traits in African-ancestry individuals reveals common associated genes in African and non-African populations.	Blood pressure	28,190 African American individuals, 1,188 Nigerian ancestry individuals	69,395 European ancestry individuals, 5,266 African American individuals, 6,497 African ancestry individuals, 19,601 East Asian ancestry individuals	6q25.1	PLEKHG1	rs17080102-C	0.1	2E-11	(DBP)	0.74	[0.45-1.03] unit decrease	Affymetrix, Illumina [~ 2420000] (imputed)	N
1737	chr6	151008836	151008837	rs62434129	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	6q25.1		rs62434129-T	NR	3E-13		0.0296	[0.022-0.037] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1737	chr6	151008836	151008837	rs62434129	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	6q25.1		rs62434129-?	NR	1E-14				NR [~ 8900000] (imputed)	N
1737	chr6	151008836	151008837	rs62434129	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption interaction (2df test)	63,608 European ancestry drinkers, 10,193 African American or Afro-Caribbean heavy drinkers,  2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,494 European ancestry non-drinkers, 11,224 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,002 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,452 Hispanic drinkers, 43,316 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,945 Asian ancestry non-drinkers, 6,925 Hispanic non-drinkers	6q25.1	PLEKHG1	rs62434129-A	0.94	5E-22	(AA, Asian, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1737	chr6	151008836	151008837	rs62434129	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption interaction (2df test)	91,110 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	237,996 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,315 European ancestry non-drinkers, 2,761 African ancestry non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	6q25.1	PLEKHG1	rs62434129-A	0.94	2E-16	(AA, Asian, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1737	chr6	151008836	151008837	rs62434129	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption interaction (2df test)	63,607 European ancestry drinkers, 10,193 African American or Afro-Caribbean drinkers, 2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,492 European ancestry non-drinkers, 11,223 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,058 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	6q25.1	PLEKHG1	rs62434129-A	0.94	4E-28	(AA, Asian, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1737	chr6	151009888	151009889	rs4869931	24058526	Bhatnagar P	2013-09-13	PLoS One	Genome-wide meta-analysis of systolic blood pressure in children with sickle cell disease.	Systolic blood pressure in sickle cell anemia	1617 African American cases	NA	6q25.1	PLEKHG1	rs4869931-A	0.47	8E-6		1.21	[0.68-1.74] mmHg increase	Illumina [1019297] (imputed)	N
1737	chr6	151016057	151016058	rs275350	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	6q25.1		rs275350-C	0.44	2E-16		8.25	z score increase	Affymetrix [9061022] (imputed)	N
1737	chr6	151016057	151016058	rs275350	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	6q25.1		rs275350-C	0.44	5E-10		6.22	z score increase	Affymetrix [9061022] (imputed)	N
1737	chr6	151016057	151016058	rs275350	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Periventricular white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	6q25.1	PLEKHG1	rs275350-C	0.4202	5E-11		0.0374	[0.026-0.049] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1737	chr6	151016057	151016058	rs275350	32358547	Persyn E	2020-05-01	Nat Commun	Genome-wide association study of MRI markers of cerebral small vessel disease in 42,310 participants.	White matter hyperintensities	39,011 European ancestry individuals, 2,099 African ancestry individuals, 795 Hispanic individuals, 3,299 Asian ancestry individuals	NA	6q25.1	PLEKHG1	rs275350-C		9E-17		7.807	[NR] Zscore increase	Affymetrix [9700000] (imputed)	N
1737	chr6	151016057	151016058	rs275350	30659137	Traylor M	2019-01-18	Neurology	Genetic variation in PLEKHG1 is associated with white matter hyperintensities (n = 11,226).	White matter hyperintensity volume	8,429 European ancestry individuals, 2,797 European ancestry individuals with ischemic stroke	1,202 European ancestry individuals	6q25.1	PLEKHG1	rs275350-C	0.57	2E-9		0.071	[0.046-0.096] unit increase	Affymetrix, Illumina [at least 39131578] (imputed)	N
1737	chr6	151016737	151016738	rs654698	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	6q25.1	PLEKHG1	rs654698-G	0.060042	2E-11		0.030888611	[0.022-0.04] unit increase	Affymetrix [93095623] (imputed)	N
1737	chr6	151018908	151018909	rs6940540	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume x hypertension interaction (2df)	46,055 European ancestry individuals, 2,469 African American individuals	NA	6q25.1	PLEKHG1	rs6940540-G	0.4097	2E-13				Affymetrix, Illumina [9900000] (imputed)	N
1737	chr6	151018908	151018909	rs6940540	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume x hypertension interaction (2df)	46,055 European ancestry individuals	NA	6q25.1	PLEKHG1	rs6940540-G	0.41	2E-13				Affymetrix, Illumina [9900000] (imputed)	N
1737	chr6	151018908	151018909	rs6940540	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume (adjusted for hypertension)	46,055 European ancestry individuals, 2,469 African American individuals	NA	6q25.1	PLEKHG1	rs6940540-G	NR	1E-13		0.0433	[0.032-0.055] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1737	chr6	151018908	151018909	rs6940540	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	48,454 European ancestry individuals	NA	6q25.1	PLEKHG1	rs6940540-G	NR	1E-14		0.0443	[0.033-0.055] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1737	chr6	151018908	151018909	rs6940540	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	2,516 African American individuals, 48,454 European ancestry individuals	NA	6q25.1	PLEKHG1	rs6940540-G	0.4106	7E-15		0.0448	[0.033-0.056] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1737	chr6	151019071	151019072	rs28431130	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	6q25.1	NR	rs28431130-?		2E-10	(Uncinate fasciculus)			NR [8955960] (imputed)	N
1737	chr6	151019711	151019711	rs5880893	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6q25.1	NR	rs5880893-?		8E-10	(Uncinate fasciculus)			NR [8955960] (imputed)	N
1737	chr6	151019749	151019750	rs1552886	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls, 49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	6q25.1		rs1552886-G	NR	9E-10		0.0864	[0.059-0.114] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1737	chr6	151021977	151021978	rs12192990	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	6q25.1	NR	rs12192990-G	0.4054	2E-13				NR [9056863] (imputed)	N
1737	chr6	151021977	151021978	rs12192990	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	6q25.1	NR	rs12192990-G	0.4054	3E-12				NR [9056863] (imputed)	N
1737	chr6	151102829	151102830	rs75253868	23535033	Sherva R	2013-03-24	Alzheimers Dement	Genome-wide association study of the rate of cognitive decline in Alzheimer's disease.	Alzheimer's disease (cognitive decline)	303 European ancestry cases		6q25.1	PLEKHG1	rs75253868-?	0.03	2E-6		0.26	unit decrease	Illumina [NR] (imputed)	N
1737	chr6	151125142	151125143	rs10046301	28090653	Liu Y	2017-01-16	Clin Pharmacol Ther	Genome-Wide Study Links PNPLA3 Variant With Elevated Hepatic Transaminase After Acute Lymphoblastic Leukemia Therapy.	Alanine aminotransferase (ALT) levels after remission induction therapy in actute lymphoblastic leukemia (ALL)	up to 488 European ancestry cases, up to 111 African American cases, up to 60 Hispanic cases, up to 56 other ancestry cases	NA	6q25.1	PLEKHG1	rs10046301-C		6E-6	(EA)	1.42	[1.03-1.95]	Affymetrix, Illumina [NR] (imputed)	N
1737	chr6	151125250	151125251	rs10046456	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6q25.1	PLEKHG1	rs10046456-A	0.04	3E-6	(Moderate&vigorous activity )	0.03	[NR] min/d increase	Illumina [899892]	N
1737	chr6	151125250	151125251	rs10046456	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6q25.1	PLEKHG1	rs10046456-A	0.04	3E-6	(Moderate activity )	0.03	[NR] %awake time increase	Illumina [899892]	N
1737	chr6	151125250	151125251	rs10046456	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6q25.1	PLEKHG1	rs10046456-A	0.04	2E-6	(Moderate activity )	0.03	[NR] min/d increase	Illumina [899892]	N
1738	chr6	151135384	151135385	rs79102053	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	6q25.1	NR	rs79102053-A	NR	3E-7	(GEE model)	1.004	[0.62-1.39] unit decrease	NR [NR] (imputed)	N
1738	chr6	151163114	151163115	rs17427389	22488850	Zuo L	2012-04-04	Am J Med Genet B Neuropsychiatr Genet	Genome-wide search for replicable risk gene regions in alcohol and nicotine co-dependence.	Alcohol and nicotine co-dependence	818 European ancestry cases, 1,396 European ancestry controls, 449 African American cases, 480 African American controls	NA	6q25.1	PLEKHG1	rs17427389-?	NR	1E-6				Illumina [805814]	N
1738	chr6	151207077	151207078	rs11754661	20885792	Naj AC	2010-09-23	PLoS Genet	Dementia revealed: novel chromosome 6 locus for late-onset Alzheimer disease provides genetic evidence for folate-pathway abnormalities.	Alzheimer's disease (late onset)	931 cases, 1,104 controls	1,338 cases, 2,003 controls	6q25.1	MTHFD1L	rs11754661-A	0.07	2E-10		2.1	[1.67-2.64]	Illumina [483399]	N
1738	chr6	151236179	151236180	rs9397365	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	6q25.1	MTHFD1L	rs9397365-G	0.09	8E-8	(AA)	21.07	[19.58-22.56]	Illumina [905956]	N
1738	chr6	151252984	151252985	rs6922269	17634449	Samani NJ	2007-07-18	N Engl J Med	Genomewide association analysis of coronary artery disease.	Coronary heart disease	1,926 European ancestry cases, 2,938 European ancestry controls	875 European ancestry cases, 1,644 European ancestry controls	6q25.1	MTHFD1L	rs6922269-A	0.25	3E-8		1.23	[1.15-1.33]	Affymetrix [377857]	N
1739	chr6	151266869	151266870	rs13193176	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	6q25.1	NR	rs13193176-?	NR	1E-8				Illumina [7760689] (imputed)	N
1739	chr6	151286463	151286464	rs145508814	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		MTHFD1L	rs145508814-?	NR	4E-11	(male)	2.84756	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1739	chr6	151300885	151300886	rs9322293	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	6q25.1	NR	rs9322293-?	NR	6E-6		0.100867	[0.057-0.145] unit increase	NR [13958389] (imputed)	N
1739	chr6	151301240	151301241	rs4869965	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	6q25.1	MTHFD1L, AKAP12, ZBTB2	rs4869965-?		5E-20				Affymetrix, Illumina [NR] (imputed)	N
1739	chr6	151314840	151314841	rs524732	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	6q25.1	NR	rs524732-A	NR	1E-6		1.06	[NR]	Illumina [7158791] (imputed)	N
1739	chr6	151319826	151319827	rs561060	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	6q25.1	MTHFD1L	rs561060-T	0.382486624692417	3E-7	(G_unclassified_P_Bacteroidetes_HB)	0.277769	[0.17-0.38] unit increase	Illumina [7711310] (imputed)	N
1739	chr6	151327847	151327848	rs505358	35215271	Almandil NB	2022-01-27	Pharmaceuticals (Basel)	Integration of Transcriptome and Exome Genotyping Identifies Significant Variants with Autism Spectrum Disorder.	Autism spectrum disorder	70 Arab ancestry cases, 132 Arab ancestry controls	NA	6q25.1	NA	rs505358-A	0.5909	7E-6		0.3422	[0.2132-0.5492]	Illumina [243345]	N
1740	chr6	151430072	151430073	rs34097647	30850646	Tziotzios C	2019-03-08	Nat Commun	Genome-wide association study in frontal fibrosing alopecia identifies four susceptibility loci including HLA-B*07:02.	Frontal fibrosing alopecia	1,016 European ancestry cases, 4,145 European ancestry controls		6q25.1	NR	rs34097647-T	0.197	1E-6		1.36	[1.20-1.55]	Illumina [~ 8000000] (imputed)	N
1740	chr6	151456592	151456593	rs9478961	25760438	Anderson D	2015-03-11	PLoS One	First genome-wide association study in an Australian aboriginal population provides insights into genetic risk factors for body mass index and type 2 diabetes.	Type 2 diabetes	89 Martu Australian Aboriginal ancestry cases, 302 Martu Australian Aboriginal ancestry controls	NA	6q25.1	MTHFD1L, AKAP12	rs9478961-?	NR	2E-7		0.44	[0.28-0.60] unit increase	Illumina [1075436] (imputed)	N
1740	chr6	151461964	151461965	rs12660147	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	7,894 Sub-Saharan African ancestry individuals	NA	6q25.1		rs12660147-C	0.984102	1E-5		0.0322252	[0.018-0.047] unit decrease	Illumina [13900000] (imputed)	N
1740	chr6	151482048	151482049	rs79715039	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6q25.1	NR	rs79715039-T	0.0453	6E-9	(CALD1)	0.05173	NR unit increase	Illumina [1671387] (imputed)	N
1741	chr6	151524799	151524800	rs4869998	32998551	Docherty AR	2020-10-01	Am J Psychiatry	Genome-Wide Association Study of Suicide Death and Polygenic Prediction of Clinical Antecedents.	Suicide	3,413 European ancestry cases, 14,810 European ancestry controls	NA	6q25.1	NR	rs4869998-?	NR	3E-7		0.02229776	[0.014-0.031] unit increase	Illumina [7519308] (imputed)	N
1741	chr6	151560734	151560735	rs6557122	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	6q25.1	AKAP12	rs6557122-T	0.754	2E-6		0.036	[0.02-0.052] unit increase	Affymetrix [7947838] (imputed)	N
1741	chr6	151562112	151562113	rs7773781	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	6q25.1	NR	rs7773781-G	0.250394	4E-8		0.0193578	[0.012-0.026] unit decrease	NR [19129689] (imputed)	N
1741	chr6	151568872	151568873	rs6929715	29860282	Scelsi MA	2018-05-30	Brain	Genetic study of multimodal imaging Alzheimer's disease progression score implicates novel loci.	Alzheimer's disease progression score	944 European ancestry individuals	NA	6q25.1	AKAP12	rs6929715-?		4E-6	(corrected for APOE4 status and baseline cortical amyloid)	0.05	[NR] unit decrease	Illumina [5137218] (imputed)	N
1741	chr6	151577738	151577739	rs10434895	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous melanoma or hair colour	36,760 European ancestry cutaneous melanoma cases, 375,188 European ancestry controls, 352,662 European ancestry individuals	NA	6q25.1	AKAP12	rs10434895-A	0.524207	2E-42				Affymetrix, Illumina [NR] (imputed)	N
1741	chr6	151577738	151577739	rs10434895	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	6q25.1		rs10434895-?	NR	2E-25				NR [~ 8900000] (imputed)	N
1741	chr6	151577829	151577830	rs10434896	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Nevus count or cutaneous melanoma	36,760 European ancestry cutaneous melanoma cases, 375,188 European ancestry controls, 12,930 European ancestry individuals, 52,847 individuals	NA	6q25.1	AKAP12	rs10434896-C	0.524346	8E-10				Affymetrix, Illumina [NR] (imputed)	N
1741	chr6	151577829	151577830	rs10434896	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous malignant melanoma	36,760 European ancestry cases, 375,188 European ancestry controls	NA	6q25.1	AKAP12	rs10434896-?	NR	8E-8				Affymetrix, Illumina [NR] (imputed)	N
1741	chr6	151579431	151579432	rs4869723	32339537	Roberts V	2020-04-24	J Invest Dermatol	Genome wide association study identifies genetic associations with perceived age.	Youthful appearance (self-reported)	423,992 European ancestry individuals	NA	6q25.1	AKAP12	rs4869723-C	0.559849	2E-20		0.9603179	NR	Affymetrix [~ 9600000] (imputed)	N
1741	chr6	151579431	151579432	rs4869723	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	6q25.1	AKAP12	rs4869723-T	0.439	5E-13		1.058	NR	Affymetrix [9154080] (imputed)	N
1741	chr6	151580764	151580765	rs9397040	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Brown vs. black hair color	269,394 British ancestry brown hair individuals, 14,526 British ancestry black hair individuals	NA	6q25.1	AKAP12	rs9397040-A	0.4175	1E-9		1.079	NR	Affymetrix [9154080] (imputed)	N
1741	chr6	151583968	151583969	rs12175863	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	6q25.1	NR	rs12175863-?	NR	5E-6	(AA)	23.28	[20.79-25.77]	Illumina [905956]	N
1741	chr6	151600320	151600321	rs73615423	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	6q25.1	NR	rs73615423-?	NR	4E-6		10667.331	NR unit decrease	Illumina [2379855]	N
1741	chr6	151626171	151626172	rs68077340	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		AKAP12	rs68077340-?	NR	3E-8		0.627628	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1741	chr6	151646630	151646631	rs7757002	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	6q25.1		rs7757002-A	0.1	9E-9		5.74	z score increase	Affymetrix [9061022] (imputed)	N
1742	chr6	151657971	151657972	rs112286726	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	7,542 Hispanic or Latin American individuals	NA	6q25.1	NR	rs112286726-T	0.993614	1E-9		0.622087	[0.42-0.82] SD units decrease	Affymetrix, Illumina [25652697] (imputed)	N
1742	chr6	151672949	151672950	rs200662204	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	6q25.1	AKAP12	rs200662204-G	0.99934	2E-9		0.225037	[0.15-0.3] unit decrease	NR [13737936] (imputed)	N
1742	chr6	151686904	151686905	rs11155787	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	6q25.1		rs11155787-T	NR	6E-10		0.0131	[0.009-0.0172] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
1742	chr6	151686904	151686905	rs11155787	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	6q25.1	NR	rs11155787-C	0.360166	1E-12		0.00554468	[0.0038-0.0073] unit increase	Affymetrix [16582909] (imputed)	N
1742	chr6	151686904	151686905	rs11155787	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	6q25.1	NR	rs11155787-C	0.360166	9E-10		0.00537676	[0.0035-0.0073] unit increase	Affymetrix [16582965] (imputed)	N
1742	chr6	151693067	151693068	rs12190712	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	6q25.1	ZBTB2	rs12190712-T	0.0947	3E-17		0.0269	[0.021-0.033] unit increase	Affymetrix [18391927] (imputed)	N
1742	chr6	151695964	151695965	rs34215066	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	6q25.1	NR	rs34215066-G	0.118278	3E-8		0.0571304	[0.036-0.078] unit increase	Affymetrix [17914406] (imputed)	N
1742	chr6	151698747	151698748	rs9479025	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	6q25.1	ZBTB2	rs9479025-A	0.481156	8E-9		0.013083566	[0.0086-0.0175] unit increase	Affymetrix [93095623] (imputed)	N
1742	chr6	151698747	151698748	rs9479025	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q25.1	NR	rs9479025-T	0.491995	3E-12				Affymetrix, Illumina [23467995] (imputed)	N
1742	chr6	151698747	151698748	rs9479025	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	6q25.1	NR	rs9479025-T	0.518548	3E-13		0.014158	[0.01-0.018] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
1742	chr6	151701040	151701041	rs12525200	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	6q25.1		rs12525200-T	NR	2E-9		0.0132	[0.0089-0.0175] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1742	chr6	151715281	151715281	rs367763803	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6q25.1		rs367763803-?	NR	1E-15		0.0174612	[0.013-0.022] unit increase	Affymetrix [20259828] (imputed)	N
1742	chr6	151721748	151721749	rs7771156	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q25.1	NR	rs7771156-A	0.393536	6E-10				Affymetrix, Illumina [24649327] (imputed)	N
1742	chr6	151727544	151727545	rs9397403	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6q25.1		rs9397403-?	NR	4E-21				NR [~ 8900000] (imputed)	N
1742	chr6	151739029	151739030	rs111841153	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	6q25.1	NR	rs111841153-A	0.01	8E-7	(male)	0.5726	[0.35-0.8] unit decrease	Illumina [11133794] (imputed)	N
1742	chr6	151748319	151748320	rs139696728	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	6q25.1		rs139696728-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1742	chr6	151748937	151748938	rs185853718	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	6q25.1		rs185853718-?	NR	3E-37				NR [~ 8900000] (imputed)	N
1742	chr6	151759930	151759930	rs373421938	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6q25.1		rs373421938-?	NR	9E-14		0.0275566	[0.02-0.035] unit increase	Affymetrix [20259828] (imputed)	N
1742	chr6	151773352	151773353	rs3816778	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (hospitalized covid vs population)	613 European ancestry cases, 680,416 European ancestry controls, 140 Hispanic or Latin American cases, 94,327 Hispanic or Latin American controls, 49 Black or African American cases, 22,410 Black or African American controls	NA	6q25.1		rs3816778-?	NR	7E-6		0.2309028	[0.13-0.33] unit decrease	Illumina [9875426] (imputed)	N
1743	chr6	151791736	151791737	rs13202913	28654678	Mandage R	2017-06-27	PLoS One	Genetic factors affecting EBV copy number in lymphoblastoid cell lines derived from the 1000 Genome Project samples.	Epstein-Barr virus copy number in lymphoblastoid cell lines	389 East Asian ancestry individuals, 189 South Asian ancestry individuals, 492 European ancestry individuals, 467 Sub-Saharan African ancestry individuals, 59 African American individuals, 157 Hispanic/Latino individuals	NA	6q25.1	ARMT1	rs13202913-?	NR	6E-6	(EA)			NR [at least 880000]	N
1743	chr6	151803753	151803754	rs6933660	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	6q25.1	ESR1	rs6933660-C	0.69	1E-9		0.03	[0.02-0.04] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
1743	chr6	151806282	151806283	rs9397414	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	6q25.1		rs9397414-?	NR	4E-16				NR [~ 8900000] (imputed)	N
1743	chr6	151816010	151816011	rs1971256	28537267	Sapkota Y	2017-05-24	Nat Commun	Meta-analysis identifies five novel loci associated with endometriosis highlighting key genes involved in hormone metabolism.	Endometriosis	14,926 European ancestry cases, 189,715 European ancestry controls, 2,119 Japanese ancestry cases, 2,143 Japanese ancestry controls	NA	6q25.1	CCDC170	rs1971256-C	0.2	4E-8		1.09	1.06-1.13	Affymetrix, Illumina [up to 6979035] (imputed)	N
1743	chr6	151816010	151816011	rs1971256	28537267	Sapkota Y	2017-05-24	Nat Commun	Meta-analysis identifies five novel loci associated with endometriosis highlighting key genes involved in hormone metabolism.	Endometriosis	14,926 European ancestry cases, 189,715 European ancestry controls, 2,119 Japanese ancestry cases, 2,143 Japanese ancestry controls	NA	6q25.1	CCDC170	rs1971256-C	0.2	1E-7	(EA)	1.1	1.06-1.13	Affymetrix, Illumina [up to 6979035] (imputed)	N
1743	chr6	151820115	151820116	rs13208950	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q25.1	CCDC170	rs13208950-A	0.872009	9E-9	(176 ms)	0.0458623	[0.029-0.062] unit increase	Affymetrix [10000000] (imputed)	N
1743	chr6	151820115	151820116	rs13208950	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q25.1	CCDC170	rs13208950-A	0.872009	6E-10	(166 ms)	0.0493239	[0.033-0.066] unit increase	Affymetrix [10000000] (imputed)	N
1743	chr6	151820115	151820116	rs13208950	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q25.1	CCDC170	rs13208950-A	0.872009	5E-9	(178 ms)	0.0464267	[0.03-0.063] unit increase	Affymetrix [10000000] (imputed)	N
1743	chr6	151820115	151820116	rs13208950	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q25.1	CCDC170	rs13208950-A	0.872009	4E-9	(164 ms)	0.0472082	[0.031-0.064] unit increase	Affymetrix [10000000] (imputed)	N
1743	chr6	151820115	151820116	rs13208950	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q25.1	CCDC170	rs13208950-A	0.872009	4E-8	(186 ms)	0.0436143	[0.027-0.06] unit increase	Affymetrix [10000000] (imputed)	N
1743	chr6	151820115	151820116	rs13208950	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q25.1	CCDC170	rs13208950-A	0.872009	4E-8	(184 ms)	0.0434471	[0.027-0.06] unit increase	Affymetrix [10000000] (imputed)	N
1743	chr6	151820115	151820116	rs13208950	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q25.1	CCDC170	rs13208950-A	0.872009	4E-8	(180 ms)	0.0442094	[0.028-0.061] unit increase	Affymetrix [10000000] (imputed)	N
1743	chr6	151820115	151820116	rs13208950	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q25.1	CCDC170	rs13208950-A	0.872009	3E-8	(198 ms)	0.0430761	[0.027-0.06] unit increase	Affymetrix [10000000] (imputed)	N
1743	chr6	151820115	151820116	rs13208950	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q25.1	CCDC170	rs13208950-A	0.872009	3E-8	(156 ms)	0.0450527	[0.029-0.061] unit increase	Affymetrix [10000000] (imputed)	N
1743	chr6	151820115	151820116	rs13208950	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q25.1	CCDC170	rs13208950-A	0.872009	2E-8	(196 ms)	0.0446232	[0.028-0.061] unit increase	Affymetrix [10000000] (imputed)	N
1743	chr6	151820115	151820116	rs13208950	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q25.1	CCDC170	rs13208950-A	0.872009	2E-8	(162 ms)	0.0448544	[0.028-0.061] unit increase	Affymetrix [10000000] (imputed)	N
1743	chr6	151820115	151820116	rs13208950	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q25.1	CCDC170	rs13208950-A	0.872009	1E-9	(168 ms)	0.0486298	[0.032-0.065] unit increase	Affymetrix [10000000] (imputed)	N
1743	chr6	151820115	151820116	rs13208950	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q25.1	CCDC170	rs13208950-A	0.872009	1E-8	(170 ms)	0.0459711	[0.03-0.062] unit increase	Affymetrix [10000000] (imputed)	N
1743	chr6	151820115	151820116	rs13208950	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q25.1	CCDC170	rs13208950-A	0.872009	1E-8	(160 ms)	0.0449343	[0.029-0.061] unit increase	Affymetrix [10000000] (imputed)	N
1743	chr6	151820115	151820116	rs13208950	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q25.1	CCDC170	rs13208950-A	0.872009	1E-8	(158 ms)	0.0451344	[0.029-0.062] unit increase	Affymetrix [10000000] (imputed)	N
1743	chr6	151824448	151824449	rs12173791	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Endometriosis	4,511 European ancestry cases, 227,260 European ancestry controls, 1,786 East Asian ancestry cases, 80,975 East Asian ancestry controls	NA	6q25.1		rs12173791-A	NR	5E-12		0.1857	[0.13-0.24] unit increase	Affymetrix, Illumina [25734875] (imputed)	N
1743	chr6	151828057	151828058	rs141252918	31164008	Mullins N	2019-06-05	Am J Psychiatry	GWAS of Suicide Attempt in Psychiatric Disorders and Association With Major Depression Polygenic Risk Scores.	Suicide attempts in major depressive disorder or bipolar disorder or schizophrenia	1,622 European ancestry attempters with major depressive disorder, 8,786 European ancestry nonattempters with major depressive disorder, 3,264 European ancestry attempters with bipolar disorder, 5,500 European ancestry nonattempters with bipolar disorder, 1,683 European ancestry attempters with schizophrenia, 2,946 European ancestry nonattempters with schizophrenia	NA	6q25.1	NR	rs141252918-G	0.01	6E-7		1.73	1.39-2.14	NR [at least 8482392] (imputed)	N
1743	chr6	151828057	151828058	rs141252918	31164008	Mullins N	2019-06-05	Am J Psychiatry	GWAS of Suicide Attempt in Psychiatric Disorders and Association With Major Depression Polygenic Risk Scores.	Suicide attempts in major depressive disorder or bipolar disorder or schizophrenia	1,622 European ancestry attempters with major depressive disorder, 8,786 European ancestry nonattempters with major depressive disorder, 3,264 European ancestry attempters with bipolar disorder, 5,500 European ancestry nonattempters with bipolar disorder, 1,683 European ancestry attempters with schizophrenia, 2,946 European ancestry nonattempters with schizophrenia	NA	6q25.1	NR	rs141252918-G	0.01	6E-7		1.73	1.39-2.14	NR [at least 8482392] (imputed)	N
1743	chr6	151838244	151838245	rs7759516	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	6q25.1	NR	rs7759516-C	0.182186	4E-10		0.016129	[0.011-0.021] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
1743	chr6	151844442	151844443	rs954238	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	6q25.1		rs954238-?	NR	6E-10				NR [~ 8900000] (imputed)	N
1743	chr6	151855592	151855593	rs10872673	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	6q25.1		rs10872673-T	NR	2E-11		0.0141	[0.01-0.0182] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
1743	chr6	151855592	151855593	rs10872673	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	6q25.1		rs10872673-?	NR	7E-8				NR [~ 8900000] (imputed)	N
1743	chr6	151855592	151855593	rs10872673	27476799	Nielson CM	2016-09-06	J Bone Miner Res	Novel Genetic Variants Associated With Increased Vertebral Volumetric BMD, Reduced Vertebral Fracture Risk, and Increased Expression of SLC1A3 and EPHB2.	Lumbar spine bone mineral density (trabecular)	12,287 European ancestry individuals	2,987 individuals	6q25.1	C6orf97	rs10872673-G	0.6	8E-7		0.065	[0.041-0.089] unit increase	Affymetrix, Illumina [up to 37790451] (imputed)	N
1743	chr6	151855592	151855593	rs10872673	27476799	Nielson CM	2016-09-06	J Bone Miner Res	Novel Genetic Variants Associated With Increased Vertebral Volumetric BMD, Reduced Vertebral Fracture Risk, and Increased Expression of SLC1A3 and EPHB2.	Lumbar spine bone mineral density (integral)	11,080 European ancestry individuals	NA	6q25.1	C6orf97	rs10872673-G	0.6	2E-7		0.066	[0.041-0.091] unit increase	Affymetrix, Illumina [up to 2659730] (imputed)	N
1743	chr6	151857593	151857594	rs6931664	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	6q25.1	CCDC170	rs6931664-A	0.40062	2E-33		0.029679	[0.025-0.035] unit decrease	NR [13737936] (imputed)	N
1743	chr6	151858597	151858598	rs9371220	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	265,204 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6q25.1	NR	rs9371220-C	NR	7E-9		0.027	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1743	chr6	151858597	151858598	rs9371220	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	265,204 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6q25.1	NR	rs9371220-C	NR	8E-7		0.023	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1743	chr6	151859313	151859314	rs4870034	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	6q25.1	CCDC170	rs4870034-A	0.3008	1E-10		0.016590178	[0.012-0.022] unit decrease	Affymetrix [11515109] (imputed)	N
1743	chr6	151863504	151863505	rs4455680	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6q25.1		rs4455680-?	NR	2E-119		0.0590047	[0.054-0.064] unit decrease	Affymetrix [20259828] (imputed)	N
1743	chr6	151872962	151872963	rs9371538	27424934	Choi HJ	2016-07-15	Bone	Genome-wide association study in East Asians suggests UHMK1 as a novel bone mineral density susceptibility gene.	Bone mineral density (spine)	2,729 Korean ancestry individuals	1,547 Han Chinese ancestry individuals, 3,237 European ancestry individuals	6q25.1	ESR1	rs9371538-T	0.45	6E-9		0.11	NR unit decrease	Affymetrix [328918]	N
1743	chr6	151872962	151872963	rs9371538	27424934	Choi HJ	2016-07-15	Bone	Genome-wide association study in East Asians suggests UHMK1 as a novel bone mineral density susceptibility gene.	Bone mineral density (spine)	2,729 Korean ancestry individuals	1,547 Han Chinese ancestry individuals, 3,237 European ancestry individuals	6q25.1	ESR1	rs9371538-T	0.45	3E-6	(males)	0.14	NR unit decrease	Affymetrix [328918]	N
1743	chr6	151873895	151873896	rs13213582	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	6q25.1	NR	rs13213582-T	NR	5E-12		0.0281	[0.02-0.036] unit increase	Affymetrix [9000000] (imputed)	N
1743	chr6	151874121	151874122	rs9478217	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density (age 30-45)	10,062 European and unknown ancestry individuals	NA	6q25.1	NR	rs9478217-A	0.4637	4E-15		0.1173	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
1743	chr6	151885985	151885986	rs9371221	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Heel bone mineral density variance	197,261 European ancestry individuals	NA	6q25.1	CCDC170	rs9371221-?	NR	5E-10				NR [5554549] (imputed)	N
1743	chr6	151885985	151885986	rs9371221	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Heel bone mineral density	197,261 European ancestry individuals	NA	6q25.1	CCDC170	rs9371221-?	NR	1E-76				NR [5554549] (imputed)	N
1743	chr6	151892456	151892456	rs11428711	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6q25.1		rs11428711-?	NR	2E-73		0.0430656	[0.038-0.048] unit decrease	Affymetrix [20259828] (imputed)	N
1743	chr6	151895455	151895456	rs6909279	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	6q25.1		rs6909279-?	NR	1E-300				NR [~ 8900000] (imputed)	N
1743	chr6	151895455	151895456	rs6909279	23437003	Paternoster L	2013-02-21	PLoS Genet	Genetic determinants of trabecular and cortical volumetric bone mineral densities and bone microstructure.	Bone mineral density	up to 5,878 European ancestry individuals	up to 1,052 European ancestry individuals	6q25.1	ESR1, C6orf97	rs6909279-G	0.40	1E-9	(Cortical vBMD)	0.09	[0.070-0.110] unit decrease	Illumina [2401124] (imputed)	N
1743	chr6	151896234	151896235	rs9479075	29499414	Pei YF	2018-02-27	Bone	Joint study of two genome-wide association meta-analyses identified 20p12.1 and 20q13.33 for bone mineral density.	Lumbar spine bone mineral density	up to 4,692 European ancestry individuals, up to 1,539 Han Chinese ancestry individuals, up to 849 African American individuals, up to 446 Hispanic individuals, 2,882 European ancestry whole-genome sequenced individuals, 3,549 European ancestry whole-exome sequenced individuals, 26,534 European ancestry non-array genotype imputed individuals	NA	6q25.1	C6ORF97	rs9479075-A	0.488202	4E-14		0.06	[0.045-0.075] unit increase	Affymetrix, Illumina [7998108] (imputed)	N
1743	chr6	151896234	151896235	rs9479075	29499414	Pei YF	2018-02-27	Bone	Joint study of two genome-wide association meta-analyses identified 20p12.1 and 20q13.33 for bone mineral density.	Femoral neck bone mineral density	up to 4,692 European ancestry individuals, up to 1,539 Han Chinese ancestry individuals, up to 849 African American individuals, up to 446 Hispanic individuals, 2,882 European ancestry whole-genome sequenced individuals, 3,549 European ancestry whole-exome sequenced individuals, 26,534 European ancestry non-array genotype imputed individuals	NA	6q25.1	C6ORF97	rs9479075-A	0.488202	2E-13		0.0515	[0.038-0.065] unit increase	Affymetrix, Illumina [7998108] (imputed)	N
1743	chr6	151898505	151898506	rs1871859	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	6q25.1		rs1871859-T	NR	6E-9		0.0163	[0.011-0.022] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
1743	chr6	151898505	151898506	rs1871859	33097703	Surakka I	2020-10-23	Nat Commun	MEPE loss-of-function variant associates with decreased bone mineral density and increased fracture risk.	Ultradistal forearm bone mineral density	21,907 European ancestry individuals	NA	6q25.1	NR	rs1871859-?	0.862524911761284	8E-13		0.1114892	[0.081-0.142] SD units increase	Illumina [11603265] (imputed)	N
1743	chr6	151898505	151898506	rs1871859	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6q25.1	CCDC170	rs1871859-T	0.122733	2E-11		0.022375742	[0.016-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1743	chr6	151898505	151898506	rs1871859	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q25.1	NR	rs1871859-T	0.183316	2E-10				Affymetrix, Illumina [23472807] (imputed)	N
1743	chr6	151898505	151898506	rs1871859	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	6q25.1	NR	rs1871859-T	0.124218	2E-11		0.019351	[0.014-0.025] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1743	chr6	151898505	151898506	rs1871859	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	6q25.1	CCDC170	rs1871859-C	0.876864	2E-101		0.0728283	[0.066-0.08] unit increase	NR [13737936] (imputed)	N
1743	chr6	151898505	151898506	rs1871859	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6q25.1		rs1871859-?	NR	5E-255		0.105936	[0.1-0.112] unit increase	Affymetrix [20259828] (imputed)	N
1743	chr6	151898505	151898506	rs1871859	24249740	Zhang L	2013-11-17	Hum Mol Genet	Multistage genome-wide association meta-analyses identified two new loci for bone mineral density.	Bone mineral density	5,833 European ancestry females, 2,639 European ancestry males, 784 Han Chinese ancestry females, 763 Han Chinese ancestry males, 712 African American females, 409 Hispanic females	7,010 European ancestry females, 3,772 European ancestry males, 2,980 East Asian ancestry females, 2,159 East Asian ancestry males	6q25.1	C6orf97	rs1871859-?	NR	9E-13	(spine)			Affymetrix, Illumina [5842825] (imputed)	N
1743	chr6	151900046	151900047	rs1891002	33097703	Surakka I	2020-10-23	Nat Commun	MEPE loss-of-function variant associates with decreased bone mineral density and increased fracture risk.	Ultradistal forearm bone mineral density	21,907 European ancestry individuals	NA	6q25.1	NR	rs1891002-?	0.726684659719466	3E-19		0.10742124	[0.084-0.131] SD units increase	Illumina [11603265] (imputed)	N
1743	chr6	151900046	151900047	rs1891002	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6q25.1		rs1891002-?	NR	1E-300		0.0883992	[0.084-0.093] unit increase	Affymetrix [20259828] (imputed)	N
1743	chr6	151900046	151900047	rs1891002	28472463	Mullin BH	2017-05-04	Hum Mol Genet	Genome-wide association study meta-analysis for quantitative ultrasound parameters of bone identifies five novel loci for broadband ultrasound attenuation.	Bone ultrasound measurement (broadband ultrasound attenuation)	1,268 whole genome sequenced European ancestry women, 8,880 European ancestry women, 6,479 European ancestry men	NA	6q25.1	CCDC170, ESR1	rs1891002-A	0.29	2E-10		0.08	[0.06-0.1] unit decrease	Illumina [11973598] (imputed)	N
1743	chr6	151901408	151901409	rs4870044	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	6q25.1	CCDC170	rs4870044-T	0.29	1E-8		5.68	z-score increase	Affymetrix [4311822] (imputed)	N
1743	chr6	151901408	151901409	rs4870044	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	Total cholesterol levels	up to 237,050 European ancestry individuals, up to 16,935 African ancestry individuals, up to 30,468 South Asian ancestry individuals, up to 8,287 East Asian ancestry individuals, 5,084 Hispanic individuals	up to 286,268 European and unknown ancestry individuals	6q25.1	C6orf97	rs4870044-T	NR	2E-9		0.01256884	[0.0085-0.0167] unit increase	Illumina [242289]	N
1743	chr6	151901408	151901409	rs4870044	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	Total cholesterol levels	up to 237,050 European ancestry individuals	NA	6q25.1	NR	rs4870044-T	0.29	3E-7		0.016	unit increase	Illumina [242289]	N
1743	chr6	151901408	151901409	rs4870044	18445777	Styrkarsdottir U	2008-04-29	N Engl J Med	Multiple genetic loci for bone mineral density and fractures.	Bone mineral density (spine)	5,861 European ancestry individuals	7,925 European ancestry individuals	6q25.1	ESR1	rs4870044-T	0.28	2E-11		0.11	[0.08-0.14] s.d. decrease	Illumina [301019]	N
1743	chr6	151901408	151901409	rs4870044	18445777	Styrkarsdottir U	2008-04-29	N Engl J Med	Multiple genetic loci for bone mineral density and fractures.	Bone mineral density (hip)	5,861 European ancestry individuals	7,925 European ancestry individuals	6q25.1	ESR1, C6orf97	rs4870044-T	0.28	2E-7		0.08	[0.05-0.11] s.d. decrease	Illumina [301019]	N
1743	chr6	151901801	151901802	rs4869739	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6q25.1	CCDC170	rs4869739-?	NR	4E-340				Affymetrix [20259828] (imputed)	N
1743	chr6	151901801	151901802	rs4869739	28472463	Mullin BH	2017-05-04	Hum Mol Genet	Genome-wide association study meta-analysis for quantitative ultrasound parameters of bone identifies five novel loci for broadband ultrasound attenuation.	Bone ultrasound measurement (velocity of sound)	1,268 whole genome sequenced European ancestry women, 8,880 European ancestry women, 6,479 European ancestry men	NA	6q25.1	CCDC170, ESR1	rs4869739-T	0.29	1E-11		0.08	[0.06-0.1] unit decrease	Illumina [11973598] (imputed)	N
1743	chr6	151901801	151901802	rs4869739	24430505	Moayyeri A	2014-01-14	Hum Mol Genet	Genetic determinants of heel bone properties: genome-wide association meta-analysis and replication in the GEFOS/GENOMOS consortium.	Bone properties (heel)	2,483 East Asian ancestry individuals, 1,885 European ancestry individuals, 11,146 individuals	10,074 European ancestry individuals, 2,870 European and other ancestry individuals, 21,434 individuals	6q25.1	ESR1, CCDC170	rs4869739-T	0.33	3E-18	(VOS)	0.07	[0.06-0.09] unit decrease	Affymetrix, Illumina [up to 2609590] (imputed)	N
1743	chr6	151904362	151904363	rs35883965	32963334	Wei XT	2020-09-22	Eur J Hum Genet	Pleiotropic genomic variants at 17q21.31 associated with bone mineral density and body fat mass: a bivariate genome-wide association analysis.	Hip bone mineral density and total body fat mass (bivariate analysis)	10,070 European ancestry individuals, 1,623 Han Chinese ancestry individuals, 843 African American individuals, 445 Hispanic individuals	NA	6q25.1	C6orf97	rs35883965-?		9E-9				Affymetrix, Illumina [2374420] (imputed)	N
1743	chr6	151907747	151907748	rs4869742	33097703	Surakka I	2020-10-23	Nat Commun	MEPE loss-of-function variant associates with decreased bone mineral density and increased fracture risk.	Ultradistal forearm bone mineral density	21,907 European ancestry individuals	NA	6q25.1	NR	rs4869742-T	0.273	2E-19		0.108	[0.084-0.132] SD units decrease	Illumina [11603265] (imputed)	N
1743	chr6	151907747	151907748	rs4869742	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Fractures	53,184 British ancestry cases, 373,611 British ancestry controls	367,900 European ancestry cases, 363,919 European ancestry controls	6q25.1	CCDC170	rs4869742-C	0.7088	2E-23		0.0327	[0.026-0.039] unit decrease	NR [13977204] (imputed)	N
1743	chr6	151907747	151907748	rs4869742	22504420	Estrada K	2012-04-15	Nat Genet	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Lumbar spine bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	6q25.1	C6orf97	rs4869742-T	0.31	4E-35		0.08	[NR] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1743	chr6	151907747	151907748	rs4869742	21540461	Kim DH	2011-05-03	Blood	A genome-wide association study identifies novel loci associated with susceptibility to chronic myeloid leukemia.	Chronic myeloid leukemia	201 Korean ancestry cases, 497 Korean ancestry controls	237 Korean ancestry cases, 1,000 Korean ancestry controls, 232 European ancestry cases, 576 European ancestry controls	6q25.1	AKAP12, ZBTB2, MTHFD1L, RMND1, C6orf211, ESR1, C6orf97	rs4869742-T	0.77	2E-6		1.67	[1.35-2.04]	Affymetrix [456522]	N
1743	chr6	151908011	151908012	rs4869744	33893285	Guindo-Martinez M	2021-04-23	Nat Commun	The impact of non-additive genetic associations on age-related complex diseases.	Osteoporosis	5,399 European ancestry cases, 51,238 European ancestry controls	NA	6q25.1		rs4869744-C	0.291755	4E-9		1.15		Affymetrix [15544346] (imputed)	N
1743	chr6	151908011	151908012	rs4869744	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6q25.1		rs4869744-?	NR	1E-300		0.0882182	[0.084-0.093] unit increase	Affymetrix [20259828] (imputed)	N
1743	chr6	151908011	151908012	rs4869744	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	6q25.1	CCDC170	rs4869744-T	0.711636	9E-80	(women)	0.0925895	[0.083-0.103] unit increase	NR [17166351] (imputed)	N
1743	chr6	151908011	151908012	rs4869744	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	6q25.1	CCDC170	rs4869744-T	0.711333	4E-150		0.0946706	[0.087-0.102] unit increase	NR [17166351] (imputed)	N
1743	chr6	151908011	151908012	rs4869744	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	6q25.1	CCDC170	rs4869744-T	0.710987	1E-70	(men)	0.0987417	[0.088-0.11] unit increase	NR [17166351] (imputed)	N
1743	chr6	151910125	151910126	rs6557155	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density (age over 60)	22,504 European ancestry and African American individuals	NA	6q25.1	NR	rs6557155-T	0.428	5E-22		0.0981	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
1743	chr6	151910125	151910126	rs6557155	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density (age 45-60)	18,805 European individuals	NA	6q25.1	NR	rs6557155-T	0.4255	1E-18		0.0968	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
1743	chr6	151910125	151910126	rs6557155	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	6q25.1	NR	rs6557155-T	0.4318	3E-37		0.0751	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
1743	chr6	151910125	151910126	rs6557155	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	6q25.1	NR	rs6557155-T	0.4158	3E-34	(European)	0.0785	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
1743	chr6	151911871	151911872	rs9383929	28472463	Mullin BH	2017-05-04	Hum Mol Genet	Genome-wide association study meta-analysis for quantitative ultrasound parameters of bone identifies five novel loci for broadband ultrasound attenuation.	Bone ultrasound measurement (broadband ultrasound attenuation)	1,268 whole genome sequenced European ancestry women, 8,880 European ancestry women, 6,479 European ancestry men	NA	6q25.1	CCDC170, ESR1	rs9383929-A	0.29	3E-8	(male)	0.11	[0.071-0.149] unit decrease	Illumina [11973598] (imputed)	N
1743	chr6	151911978	151911979	rs57960590	30898391	Lawrenson K	2019-03-19	Gynecol Oncol	Genome-wide association studies identify susceptibility loci for epithelial ovarian cancer in east Asian women.	Epithelial ovarian cancer	3,238 East Asian ancestry cases, 4,083 East Asian ancestry controls	NA	6q25.1		rs57960590-?	NR	4E-6	(serous)	1.61		Illumina [11595112] (imputed)	N
1743	chr6	151911978	151911979	rs57960590	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	6q25.1	CCDC170	rs57960590-C	0.890576	7E-39		0.0450644	[0.038-0.052] unit increase	NR [13737936] (imputed)	N
1744	chr6	151912597	151912597	rs66943969	28472463	Mullin BH	2017-05-04	Hum Mol Genet	Genome-wide association study meta-analysis for quantitative ultrasound parameters of bone identifies five novel loci for broadband ultrasound attenuation.	Bone ultrasound measurement (velocity of sound)	1,268 whole genome sequenced European ancestry women, 8,880 European ancestry women, 6,479 European ancestry men	NA	6q25.1	CCDC170, ESR1	rs66943969-G	0.29	3E-9	(male)	0.12	[0.081-0.159] unit decrease	Illumina [11973598] (imputed)	N
1744	chr6	151912626	151912627	rs144234957	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	6q25.1		rs144234957-C	0.010801	1E-6		0.15977	[0.095-0.225] unit decrease	Affymetrix [15580782] (imputed)	N
1744	chr6	151913709	151913710	rs12525051	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6q25.1		rs12525051-?	NR	3E-129		0.052067	[0.048-0.056] unit decrease	Affymetrix [20259828] (imputed)	N
1744	chr6	151913709	151913710	rs12525051	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	6q25.1	CCDC170	rs12525051-G	0.518026	1E-34	(men)	0.0653661	[0.055-0.076] unit decrease	NR [17166351] (imputed)	N
1744	chr6	151913709	151913710	rs12525051	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	6q25.1	CCDC170	rs12525051-G	0.51736	4E-54		0.0555863	[0.048-0.063] unit decrease	NR [17166351] (imputed)	N
1744	chr6	151913709	151913710	rs12525051	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	6q25.1	CCDC170	rs12525051-G	0.516779	3E-24	(women)	0.0501254	[0.04-0.06] unit decrease	NR [17166351] (imputed)	N
1744	chr6	151914112	151914113	rs3757318	27354352	Han MR	2016-06-27	Hum Mol Genet	Genome-wide association study in East Asians identifies two novel breast cancer susceptibility loci.	Breast cancer	7,619 East Asian ancestry cases, 6,286 East Asian ancestry controls	6,605 East Asian ancestry cases, 8,543 East Asian ancestry controls	6q25.1		rs3757318-A	0.26	1E-6		1.15	[1.09-1.22]	Affymetrix, Illumina [668499] (imputed)	N
1744	chr6	151914112	151914113	rs3757318	24325915	Purrington KS	2013-12-09	Carcinogenesis	Genome-wide association study identifies 25 known breast cancer susceptibility loci as risk factors for triple-negative breast cancer.	Breast cancer (estrogen-receptor negative, progesterone-receptor negative, and human epidermal growth factor-receptor negative)	1,529 European ancestry cases, 3,399 European ancestry controls	2,148 European ancestry cases, 1,309 European ancestry controls	6q25.1	ESR1	rs3757318-A		9E-6		1.33	[1.17-1.51]	Illumina [NR] (imputed)	N
1744	chr6	151914112	151914113	rs3757318	23535729	Michailidou K	2013-04-01	Nat Genet	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	6q25.1	ESR1	rs3757318-A	0.07	2E-21		1.16	[1.12-1.21]	Affymetrix, Illumina [~ 2600000] (imputed)	N
1744	chr6	151914112	151914113	rs3757318	20453838	Turnbull C	2010-05-09	Nat Genet	Genome-wide association study identifies five new breast cancer susceptibility loci.	Breast cancer	3,659 European ancestry cases, 4,897 European ancestry controls	12,576 European ancestry cases, 12,223 European ancestry controls	6q25.1	ESR1, C6orf97	rs3757318-A	0.07	3E-6		1.3	[1.17-1.46]	Illumina [582886]	N
1744	chr6	151917686	151917687	rs202125938	24777453	Auer PL	2014-04-28	Nat Genet	Rare and low-frequency coding variants in CXCR2 and other genes are associated with hematological traits.	Platelet count	24,814 European ancestry individuals	6,526 European ancestry individuals	6q25.1	C6orf97	rs202125938-A	0.9999	4E-6		94.3	[17.39-171.21] unit decrease	Illumina [183585]	N
1744	chr6	151918855	151918856	rs12662670	27117709	Couch FJ	2016-04-27	Nat Commun	Identification of four novel susceptibility loci for oestrogen receptor negative breast cancer.	Breast cancer (estrogen-receptor negative)	4,939 European ancestry cases, 14,352 European ancestry controls	7,333 European ancestry cases, 42,468 European ancestry controls	6q25.1	ESR1	rs12662670-?	0.08	9E-15		1.2	[1.18-1.32]	Illumina [10909381] (imputed)	N
1744	chr6	151918855	151918856	rs12662670	27117709	Couch FJ	2016-04-27	Nat Commun	Identification of four novel susceptibility loci for oestrogen receptor negative breast cancer.	Breast cancer	4,939 European ancestry estrogen receptor-negative cases, 14,352 European ancestry controls	7,333 European ancestry estrogen receptor-negative cases, 7,797 European ancestry BRCA1 mutation carrier cases, 7,455  European ancestry BRCA1 mutation carrier controls, 42,468 European ancestry controls	6q25.1	ESR1	rs12662670-?	0.09	1E-19		1.19	[1.11-1.27] (BRCA1 carriers)	Illumina [10909381] (imputed)	N
1744	chr6	151918855	151918856	rs12662670	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	46,785 European ancestry cases, 42,892 European ancestry controls	NA	6q25.1	NR	rs12662670-G	0.07	1E-18		1.17	[1.13-1.22]	Affymetrix, Illumina [~ 14000000] (imputed)	N
1744	chr6	151918855	151918856	rs12662670	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	15,748 European ancestry cases, 18,084 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls	6q25.1	NR	rs12662670-G	0.07	7E-27		1.17	[1.13-1.22]	Affymetrix, Illumina [~ 11600000] (imputed)	N
1744	chr6	151925506	151925507	rs149389640	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depression	688,809 European ancestry individuals	NA	6q25.1	NR	rs149389640-A	NR	7E-10		6.175	z score increase	Affymetrix [10847151] (imputed)	N
1744	chr6	151933174	151933175	rs1038304	28472463	Mullin BH	2017-05-04	Hum Mol Genet	Genome-wide association study meta-analysis for quantitative ultrasound parameters of bone identifies five novel loci for broadband ultrasound attenuation.	Bone ultrasound measurement (broadband ultrasound attenuation)	1,268 whole genome sequenced European ancestry women, 8,880 European ancestry women, 6,479 European ancestry men	NA	6q25.1	CCDC170	rs1038304-A	0.49	3E-7	(female)	0.07	[0.05-0.09] unit increase	Illumina [11973598] (imputed)	N
1744	chr6	151933174	151933175	rs1038304	26911590	Mullin BH	2016-02-25	BMC Genomics	Genome-wide association study using family-based cohorts identifies the WLS and CCDC170/ESR1 loci as associated with bone mineral density.	Bone mineral density (spine)	1,042 Northern European ancestry individuals	5,654 Northern European ancestry individuals	6q25.1	ESR1, CCDC170	rs1038304-G	0.51	2E-7		0.13	[0.071-0.189] g/cm2 decrease	Illumina [NR] (imputed)	N
1744	chr6	151933174	151933175	rs1038304	19079262	Styrkarsdottir U	2008-12-14	Nat Genet	New sequence variants associated with bone mineral density.	Bone mineral density (hip)	6,865 European ancestry individuals	8,510 European ancestry individuals	6q25.1	ESR1	rs1038304-G	0.47	4E-10		0.08	[0.06-0.11] s.d. decrease	Illumina [305051]	N
1744	chr6	151933174	151933175	rs1038304	18445777	Styrkarsdottir U	2008-04-29	N Engl J Med	Multiple genetic loci for bone mineral density and fractures.	Bone mineral density (spine)	5,861 European ancestry individuals	7,925 European ancestry individuals	6q25.1	ESR1, C6orf97	rs1038304-G	0.47	4E-11		0.1	[0.07-0.13] s.d. decrease	Illumina [301019]	N
1744	chr6	151933174	151933175	rs1038304	18445777	Styrkarsdottir U	2008-04-29	N Engl J Med	Multiple genetic loci for bone mineral density and fractures.	Bone mineral density (hip)	5,861 European ancestry individuals	7,925 European ancestry individuals	6q25.1	ESR1	rs1038304-G	0.47	5E-9		0.08	[0.06-0.11] s.d. decrease	Illumina [301019]	N
1744	chr6	151936676	151936677	rs6929137	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Breast cancer	10,682 White British ancestry cases, 138,504 White British ancestry controls	NA	6q25.1		rs6929137-?	NR	2E-13		1.11645	[1.09-1.15]	NR [682398]	N
1744	chr6	151936676	151936677	rs6929137	19079262	Styrkarsdottir U	2008-12-14	Nat Genet	New sequence variants associated with bone mineral density.	Bone mineral density (spine)	6,865 European ancestry individuals	8,510 European ancestry individuals	6q25.1	ESR1, C6orf97	rs6929137-A	0.30	2E-10		0.1	[0.07-0.13] s.d. decrease	Illumina [305051]	N
1744	chr6	151939349	151939350	rs3734805	21263130	Fletcher O	2011-01-24	J Natl Cancer Inst	Novel breast cancer susceptibility locus at 9q31.2: results of a genome-wide association study.	Breast cancer	2,839 European ancestry cases, 3,507 European ancestry controls	9,041 European ancestry cases, 8,980 European ancestry controls	6q25.1	ESR1	rs3734805-C	0.08	1E-7		1.19	[1.11-1.27]	Illumina [~ 296114]	N
1744	chr6	151939559	151939560	rs6932260	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	6q25.1	CCDC170	rs6932260-T	0.479342	3E-17		0.0180193	[0.014-0.022] unit increase	NR [13737936] (imputed)	N
1744	chr6	151942193	151942194	rs3757322	32785646	Maguire S	2020-08-12	J Natl Cancer Inst	Common susceptibility loci for male breast cancer.	Breast cancer (male)	1,380 European ancestry cases, 3,620 European ancestry controls	810 European ancestry cases, 1,026 European ancestry controls	6q25.1	NR	rs3757322-G	NR	6E-9		1.26	1.16-1.36	Illumina [8074073] (imputed)	N
1744	chr6	151942193	151942194	rs3757322	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6q25.1	ESR1	rs3757322-G	0.32	3E-41		1.08	[1.06-1.1] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
1744	chr6	151942193	151942194	rs3757322	29058716	Milne RL	2017-10-23	Nat Genet	Identification of ten variants associated with risk of estrogen-receptor-negative breast cancer.	Breast cancer (estrogen-receptor negative)	14,135 European ancestry cases, 58,126 European ancestry controls	7,333 European ancestry cases, 42,468 European ancestry controls	6q25.1	ESR1	rs3757322-G	0.32	3E-31		1.15	[1.12-1.18]	Illumina [~ 11500000] (imputed)	N
1744	chr6	151942193	151942194	rs3757322	29058716	Milne RL	2017-10-23	Nat Genet	Identification of ten variants associated with risk of estrogen-receptor-negative breast cancer.	Breast Cancer in BRCA1 mutation carriers	7,784 European ancestry carrier cases, 7,782 European ancestry carrier controls	1,630 European ancestry carrier cases, 1,712 European ancestry carrier controls	6q25.1	ESR1	rs3757322-G	0.32	3E-12		1.14	[1.10-1.19]	Illumina [~ 11500000] (imputed)	N
1744	chr6	151944613	151944614	rs9383936	30323354	Lee JY	2018-10-15	Sci Rep	BRCA1/2-negative, high-risk breast cancers (BRCAX) for Asian women: genetic susceptibility loci and their potential impacts.	BRCA1/2-negative high-risk breast cancer	1,469 Korean ancestry cases, 5,979 Korean ancestry controls	NA	6q25.1	CCDC170, ESR1	rs9383936-A	0.34	1E-10		1.35	[1.23-1.48]	Affymetrix, Illumina [3378933] (imputed)	N
1744	chr6	151946151	151946152	rs11155804	27117709	Couch FJ	2016-04-27	Nat Commun	Identification of four novel susceptibility loci for oestrogen receptor negative breast cancer.	Breast cancer (estrogen-receptor negative)	4,939 European ancestry cases, 14,352 European ancestry controls	7,333 European ancestry cases, 42,468 European ancestry controls	6q25.1	ESR1	rs11155804-?	0.34	8E-18		1.16	[1.12-1.19]	Illumina [10909381] (imputed)	N
1744	chr6	151946151	151946152	rs11155804	27117709	Couch FJ	2016-04-27	Nat Commun	Identification of four novel susceptibility loci for oestrogen receptor negative breast cancer.	Breast cancer	4,939 European ancestry estrogen receptor-negative cases, 14,352 European ancestry controls	7,333 European ancestry estrogen receptor-negative cases, 7,797 European ancestry BRCA1 mutation carrier cases, 7,455  European ancestry BRCA1 mutation carrier controls, 42,468 European ancestry controls	6q25.1	ESR1	rs11155804-?	0.36	4E-28		1.15	[1.11-1.20] (BRCA1 carriers)	Illumina [10909381] (imputed)	N
1744	chr6	151946628	151946629	rs12665607	25342443	Lindstrom S	2014-10-24	Nat Commun	Genome-wide association study identifies multiple loci associated with both mammographic density and breast cancer risk.	Mammographic density (dense area)	7,600 European ancestry individuals	343 European ancestry individuals, 1,472 Old Order Amish individuals, 8,564 individuals	6q25.1	ESR1	rs12665607-A	0.08	2E-8		0.17	[0.092-0.248] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1744	chr6	151948365	151948366	rs2046210	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	6q25.1	NR	rs2046210-A	NR	5E-16		0.021	[0.016-0.026] unit increase	Affymetrix [9000000] (imputed)	N
1744	chr6	151948365	151948366	rs2046210	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	6q25.1		rs2046210-A	NR	3E-74		1.11	[1.1-1.13]	Affymetrix, Illumina [NR] (imputed)	N
1744	chr6	151948365	151948366	rs2046210	30323354	Lee JY	2018-10-15	Sci Rep	BRCA1/2-negative, high-risk breast cancers (BRCAX) for Asian women: genetic susceptibility loci and their potential impacts.	BRCA1/2-negative high-risk breast cancer	1,469 Korean ancestry cases, 5,979 Korean ancestry controls	NA	6q25.1	CCDC170, ESR1	rs2046210-A	0.36	1E-9		1.3	[NR]	Affymetrix, Illumina [3378933] (imputed)	N
1744	chr6	151948365	151948366	rs2046210	27354352	Han MR	2016-06-27	Hum Mol Genet	Genome-wide association study in East Asians identifies two novel breast cancer susceptibility loci.	Breast cancer	7,619 East Asian ancestry cases, 6,286 East Asian ancestry controls	6,605 East Asian ancestry cases, 8,543 East Asian ancestry controls	6q25.1		rs2046210-A	0.35	7E-15		1.22	[1.16-1.29]	Affymetrix, Illumina [668499] (imputed)	N
1744	chr6	151948365	151948366	rs2046210	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	15,748 European ancestry cases, 18,084 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls	6q25.1	NR	rs2046210-A	0.34	6E-24		1.08	[1.06-1.1]	Affymetrix, Illumina [~ 11600000] (imputed)	N
1744	chr6	151948365	151948366	rs2046210	23544013	Couch FJ	2013-03-27	PLoS Genet	Genome-wide association study in BRCA1 mutation carriers identifies novel loci associated with breast and ovarian cancer risk.	Breast Cancer in BRCA1 mutation carriers	1,426 European ancestry cases, 1,301 European ancestry controls	6,031 European ancestry cases, 5,933 European ancestry controls	6q25.1	intergenic	rs2046210-C	0.08	5E-9		1.28	[1.18-1.39]	Illumina [2568349] (imputed)	N
1744	chr6	151948365	151948366	rs2046210	23535733	Garcia-Closas M	2013-04-01	Nat Genet	Genome-wide association studies identify four ER negative-specific breast cancer risk loci.	Breast cancer	4,193 European ancestry cases, 35,194 European ancestry controls	6,514 European ancestry cases, 41,455 European ancestry controls	6q25.1	ESR1	rs2046210-A	0.423	5E-16		1.15	[1.11-1.19]	Illumina [NR]	N
1744	chr6	151948365	151948366	rs2046210	19219042	Zheng W	2009-02-15	Nat Genet	Genome-wide association study identifies a new breast cancer susceptibility locus at 6q25.1.	Breast cancer	1,505 Chinese ancestry cases, 1,522 Chinese ancestry controls	5,026 Chinese ancestry cases, 2,476 Chinese ancestry controls, 1,591 European ancestry cases, 1,466 European ancestry controls	6q25.1	ESR1, C6orf97	rs2046210-A	0.37	2E-15		1.29	[1.21-1.37]	Affymetrix [up to 607728]	N
1744	chr6	151949311	151949312	rs7763637	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Breast cancer	5,552 Japanese ancestry cases, 89,731 Japanese ancestry controls	NA	6q25.1		rs7763637-A	0.243384187	5E-13		1.1814078	[1.129184761-1.236046211]	Illumina [8919992] (imputed)	N
1744	chr6	151949581	151949582	rs6557160	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Breast cancer	6,325 East Asian ancestry cases, 73,225 East Asian ancestry controls	NA	6q25.1		rs6557160-C	0.243400665	6E-17		0.18653153	[0.14-0.23] unit increase	Illumina [13401000] (imputed)	N
1744	chr6	151949581	151949582	rs6557160	29855537	Hirata T	2018-05-31	Sci Rep	Japanese GWAS identifies variants for bust-size, dysmenorrhea, and menstrual fever that are eQTLs for relevant protein-coding or long non-coding RNAs.	Breast size	5,609 Japanese ancestry female individuals	NA	6q25.1	ESR1, CCDC170	rs6557160-C	0.251	2E-16		0.2542	[0.19-0.31] unit increase	Affymetrix [536506]	N
1744	chr6	151949805	151949806	rs6913578	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Breast cancer	17,389 European ancestry cases, 240,341 European ancestry controls, 6,325 East Asian ancestry cases, 73,225 East Asian ancestry controls	NA	6q25.1		rs6913578-C	NR	2E-30		0.1267	[0.11-0.15] unit increase	Affymetrix, Illumina [25794640] (imputed)	N
1744	chr6	151951219	151951220	rs9397435	34018994	Xu JK	2021-03-22	Chin Med J (Engl)	Genome-wide long non-coding RNA association study on Han Chinese women identifies lncHSAT164 as a novel susceptibility gene for breast cancer.	Breast cancer	1,496 Han Chinese ancestry cases, 1,257 Han Chinese ancestry controls	4,138 Han Chinese ancestry cases, 5,051 Han Chinese ancestry controls	6q25.1	NR	rs9397435-?	NR	4E-38		1.41	[1.32-1.50]	Illumina [up to 800000]	N
1744	chr6	151952001	151952002	rs9397436	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Breast cancer	17,881 European ancestry cases, 410,350 European ancestry controls	NA	6q25.1		rs9397436-G	NR	4E-18		1.1938874	NR	Affymetrix [7846216] (imputed)	N
1744	chr6	151952331	151952332	rs9397437	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6q25.1		rs9397437-A	NR	2E-14		1.1737089	[1.13-1.22]	Affymetrix [7846216] (imputed)	N
1744	chr6	151952331	151952332	rs9397437	32785646	Maguire S	2020-08-12	J Natl Cancer Inst	Common susceptibility loci for male breast cancer.	Breast cancer (male)	1,380 European ancestry cases, 3,620 European ancestry controls	810 European ancestry cases, 1,026 European ancestry controls	6q25.1	NR	rs9397437-A	NR	5E-9		1.5	1.31-1.71	Illumina [8074073] (imputed)	N
1744	chr6	151952331	151952332	rs9397437	29855537	Hirata T	2018-05-31	Sci Rep	Japanese GWAS identifies variants for bust-size, dysmenorrhea, and menstrual fever that are eQTLs for relevant protein-coding or long non-coding RNAs.	Breast size	5,609 Japanese ancestry female individuals	NA	6q25.1	C6orf97, CCDC170, ESR1	rs9397437-?	0.332	2E-14				Affymetrix [536506]	N
1744	chr6	151952331	151952332	rs9397437	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6q25.1	ESR1	rs9397437-A	0.07	5E-54		1.17	[1.14-1.21] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
1744	chr6	151952331	151952332	rs9397437	29058716	Milne RL	2017-10-23	Nat Genet	Identification of ten variants associated with risk of estrogen-receptor-negative breast cancer.	Breast cancer (estrogen-receptor negative)	14,135 European ancestry cases, 58,126 European ancestry controls	7,333 European ancestry cases, 42,468 European ancestry controls	6q25.1	NR	rs9397437-A	0.07	3E-40		1.32	[1.25-1.40] (Oncoarray)	Illumina [~ 11500000] (imputed)	N
1744	chr6	151952331	151952332	rs9397437	29058716	Milne RL	2017-10-23	Nat Genet	Identification of ten variants associated with risk of estrogen-receptor-negative breast cancer.	Breast Cancer in BRCA1 mutation carriers	7,784 European ancestry carrier cases, 7,782 European ancestry carrier controls	1,630 European ancestry carrier cases, 1,712 European ancestry carrier controls	6q25.1	NR	rs9397437-A	0.07	6E-8		1.2	[1.12-1.28]	Illumina [~ 11500000] (imputed)	N
1744	chr6	151952331	151952332	rs9397437	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Breast size	33,790 European ancestry individuals	NA	6q25.1	CCDC170, ESR1	rs9397437-?	NR	1E-11		0.158	[0.204-0.112] unit decrease	Illumina [12039487] (imputed)	N
1744	chr6	151952410	151952411	rs544235145	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6q25.1		rs544235145-?	NR	5E-34		0.213029	[0.18-0.25] unit increase	Affymetrix [20259828] (imputed)	N
1744	chr6	151954126	151954127	rs6900157	31757997	Low SK	2019-11-22	Sci Rep	Identification of two novel breast cancer loci through large-scale genome-wide association study in the Japanese population.	Breast cancer	6,669 Japanese ancestry cases, 21,930 Japanese ancestry controls	981 Japanese ancestry cases, 1,394 Japanese ancestry controls	6q25.1	CCDC170, ESR1	rs6900157-C	0.269	5E-10		1.147	[1.099-1.198]	Illumina [4946503] (imputed)	N
1744	chr6	151954833	151954834	rs140068132	25327703	Fejerman L	2014-10-20	Nat Commun	Genome-wide association study of breast cancer in Latinas identifies novel protective variants on 6q25.	Breast cancer	1,497 Latino cases, 3,213 Latino controls	1,643 Latino cases, 4,971 Latino controls	6q25.1	ESR1	rs140068132-A	0.93	9E-18		1.67	[1.49-1.89]	Affymetrix, Illumina [7229558] (imputed)	N
1744	chr6	151955913	151955914	rs60954078	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6q25.1	NR	rs60954078-G	0.07	3E-54	(EA)	0.1817	[0.16-0.2] unit increase	Illumina [~ 11800000] (imputed)	N
1744	chr6	151956749	151956755	rs371672993	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6q25.1		rs371672993-?	NR	6E-178		0.0594769	[0.055-0.064] unit decrease	Affymetrix [20259828] (imputed)	N
1744	chr6	151957713	151957714	rs12173570	34025683	Kanoni S	2021-05-07	Front Immunol	Nutrigenetic Interactions Might Modulate the Antioxidant and Anti-Inflammatory Status in Mastiha-Supplemented Patients With NAFLD.	Interleukin-10 levels in non-alcoholic fatty liver disease x mastiha supplementation interaction	35 European or unknown ancestry mastiha exposed individuals, 51 European or unknown ancestry unexposed individuals	NA	6q25.1	ESR1	rs12173570-T	0.86	7E-9		2.138	[1.41-2.86] unit increase	Illumina [10307610] (imputed)	N
1744	chr6	151957713	151957714	rs12173570	22747683	Eriksson N	2012-06-30	BMC Med Genet	Genetic variants associated with breast size also influence breast cancer risk.	Breast size	16,175 European ancestry female individuals	NA	6q25.1	ESR1, C6orf97	rs12173570-T	0.101	6E-11		0.171	[0.12-0.22] cup size increase	Illumina [7422970] (imputed)	N
1744	chr6	151960415	151960416	rs852004	29769613	Sun X	2018-05-16	Sci Rep	Genetic variant for behavioral regulation factor of executive function and its possible brain mechanism in attention deficit hyperactivity disorder.	Executive function in ADHD	547 East Asian ancestry cases	NA	6q25.1		rs852004-A	0.08	3E-8		11.84	[-15.94--7.734] unit decrease	Affymetrix [644166]	N
1744	chr6	151979046	151979047	rs10484920	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6q25.1		rs10484920-?	NR	1E-18		0.0391271	[0.03-0.048] unit increase	Affymetrix [20259828] (imputed)	N
1744	chr6	151982412	151982413	rs866457	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	6q25.1		rs866457-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1744	chr6	151987356	151987357	rs9383938	32785646	Maguire S	2020-08-12	J Natl Cancer Inst	Common susceptibility loci for male breast cancer.	Breast cancer (male)	1,380 European ancestry cases, 3,620 European ancestry controls	810 European ancestry cases, 1,026 European ancestry controls	6q25.1	NR	rs9383938-T	NR	3E-9		1.47	1.30-1.67	Illumina [8074073] (imputed)	N
1744	chr6	151987356	151987357	rs9383938	22976474	Siddiq A	2012-09-13	Hum Mol Genet	A meta-analysis of genome-wide association studies of breast cancer identifies two novel susceptibility loci at 6q14 and 20q11.	Breast cancer	3,666 European ancestry cases, 28,864 European ancestry controls, 1,004 African American cases, 2,744 African American controls	562 European ancestry cases, 6,410 European ancestry controls, 84 Japanese ancestry cases, 830 Japanese ancestry controls, 300 Latino cases, 1,164 Latino controls	6q25.1	NR	rs9383938-T	NR	2E-10		1.28	[NR]	Illumina [2608509] (imputed)	N
1744	chr6	151990234	151990235	rs1738386	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	6q25.1	NR	rs1738386-C	0.379996	2E-11		0.00808502	[0.0056-0.0106] unit increase	Affymetrix [16585854] (imputed)	N
1744	chr6	151990234	151990235	rs1738386	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	6q25.1	NR	rs1738386-C	0.379996	3E-10		0.00858522	[0.0057-0.0115] unit increase	Affymetrix [16585866] (imputed)	N
1744	chr6	151999090	151999091	rs1293940	28628665	Sobota RS	2017-06-19	PLoS Genet	A chromosome 5q31.1 locus associates with tuberculin skin test reactivity in HIV-positive individuals from tuberculosis hyper-endemic regions in east Africa.	Resistance to Mycobacterium tuberculosis in HIV-positive individuals measured by a negative tuberculin skin test (dichotomous)	244 cases, 225 controls		6q25.1	ESR1	rs1293940-A	0.3166	7E-6	(recessive model)	5.8139534	[2.7-12.55]	Illumina [542585]	N
1744	chr6	152000453	152000454	rs6905582	33097703	Surakka I	2020-10-23	Nat Commun	MEPE loss-of-function variant associates with decreased bone mineral density and increased fracture risk.	Ultradistal forearm bone mineral density	21,907 European ancestry individuals	NA	6q25.1	NR	rs6905582-?	0.838654696941376	3E-6		0.067357115	[0.039-0.096] SD units increase	Illumina [11603265] (imputed)	N
1744	chr6	152000453	152000454	rs6905582	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	6q25.1	ESR1	rs6905582-G	0.832932	1E-13		0.0203803	[0.015-0.026] unit increase	NR [13737936] (imputed)	N
1744	chr6	152000453	152000454	rs6905582	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6q25.1		rs6905582-?	NR	3E-116		0.0619041	[0.056-0.067] unit increase	Affymetrix [20259828] (imputed)	N
1744	chr6	152006910	152006911	rs851990	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	6q25.1		rs851990-?	NR	1E-86				NR [~ 8900000] (imputed)	N
1744	chr6	152008779	152008780	rs3020331	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6q25.1	ESR1	rs3020331-?	NR	3E-346				Affymetrix [20259828] (imputed)	N
1744	chr6	152008779	152008780	rs3020331	24430505	Moayyeri A	2014-01-14	Hum Mol Genet	Genetic determinants of heel bone properties: genome-wide association meta-analysis and replication in the GEFOS/GENOMOS consortium.	Bone properties (heel)	730 East Asian ancestry individuals, 2,380 European ancestry individuals, 11,150 individuals	11,058 European ancestry individuals, 2,870 European and other ancestry individuals, 21,439 individuals	6q25.1	ESR1	rs3020331-T	0.43	3E-9	(BUA)	0.06	[0.04-0.07] unit increase	Affymetrix, Illumina [up to 2609590] (imputed)	N
1744	chr6	152008779	152008780	rs3020331	24430505	Moayyeri A	2014-01-14	Hum Mol Genet	Genetic determinants of heel bone properties: genome-wide association meta-analysis and replication in the GEFOS/GENOMOS consortium.	Bone properties (heel)	2,483 East Asian ancestry individuals, 1,885 European ancestry individuals, 11,146 individuals	10,074 European ancestry individuals, 2,870 European and other ancestry individuals, 21,434 individuals	6q25.1	ESR1	rs3020331-T	0.42	7E-15	(VOS)	0.07	[0.05-0.08] unit increase	Affymetrix, Illumina [up to 2609590] (imputed)	N
1744	chr6	152008923	152008924	rs3020332	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Heel bone mineral density variance	197,261 European ancestry individuals	NA	6q25.1	ESR1	rs3020332-?	NR	5E-14				NR [5554549] (imputed)	N
1744	chr6	152008923	152008924	rs3020332	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Heel bone mineral density	197,261 European ancestry individuals	NA	6q25.1	ESR1	rs3020332-?	NR	9E-130				NR [5554549] (imputed)	N
1744	chr6	152008981	152008982	rs2941741	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	35,035 East Asian ancestry cases, 35,771 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	NA	6q25.1		rs2941741-A	0.13	8E-10	(conditional)	1.13	[1.08-1.17]	Affymetrix, Illumina [NR] (imputed)	N
1744	chr6	152008981	152008982	rs2941741	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6q25.1		rs2941741-?	NR	1E-300		0.0810937	[0.077-0.085] unit decrease	Affymetrix [20259828] (imputed)	N
1744	chr6	152008981	152008982	rs2941741	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	6q25.1	ESR1	rs2941741-G	0.583267	1E-54	(men)	0.0786675	[0.068-0.089] unit decrease	NR [17166351] (imputed)	N
1744	chr6	152008981	152008982	rs2941741	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	6q25.1	ESR1	rs2941741-G	0.581793	2E-119		0.0762563	[0.07-0.083] unit decrease	NR [17166351] (imputed)	N
1744	chr6	152008981	152008982	rs2941741	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	6q25.1	ESR1	rs2941741-G	0.580506	2E-61	(women)	0.0739684	[0.065-0.083] unit decrease	NR [17166351] (imputed)	N
1744	chr6	152009637	152009638	rs2941740	19801982	Rivadeneira F	2009-10-04	Nat Genet	Twenty bone-mineral-density loci identified by large-scale meta-analysis of genome-wide association studies.	Bone mineral density (hip)	19,195 European ancestry individuals	NA	6q25.1	ESR1	rs2941740-G	0.43	2E-10		0.07	[0.05-0.09] s.d. increase	Affymetrix, Illumina [2543686] (imputed)	N
1744	chr6	152010253	152010254	rs3020333	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	6q25.1	NR	rs3020333-A	0.5527	8E-25		0.0587	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
1744	chr6	152010253	152010254	rs3020333	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	6q25.1	NR	rs3020333-A	0.5519	5E-22	(European)	0.0599	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
1744	chr6	152010533	152010534	rs2982573	33097703	Surakka I	2020-10-23	Nat Commun	MEPE loss-of-function variant associates with decreased bone mineral density and increased fracture risk.	Ultradistal forearm bone mineral density	21,907 European ancestry individuals	NA	6q25.1	NR	rs2982573-?	0.532702922821044	2E-8		0.059609666	[0.039-0.08] SD units decrease	Illumina [11603265] (imputed)	N
1744	chr6	152010533	152010534	rs2982573	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	6q25.1	ESR1	rs2982573-T	0.579325	1E-138		0.0523445	[0.048-0.056] unit decrease	NR [13737936] (imputed)	N
1744	chr6	152010533	152010534	rs2982573	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6q25.1		rs2982573-?	NR	1E-300		0.0811273	[0.077-0.085] unit decrease	Affymetrix [20259828] (imputed)	N
1744	chr6	152012847	152012847	rs10656721	32963334	Wei XT	2020-09-22	Eur J Hum Genet	Pleiotropic genomic variants at 17q21.31 associated with bone mineral density and body fat mass: a bivariate genome-wide association analysis.	Bone mineral density (hip)	10,070 European ancestry individuals, 1,623 Han Chinese ancestry individuals, 843 African American individuals, 445 Hispanic individuals	NA	6q25.1	NR	rs10656721-?		2E-9		0.08	[0.06-0.1] unit decrease	Affymetrix, Illumina [2374420] (imputed)	N
1744	chr6	152013747	152013748	rs2982570	30158200	Trajanoska K	2018-08-29	BMJ	Assessment of the genetic and clinical determinants of fracture risk: genome wide association and mendelian randomisation study.	Fractures	37,857 European or East Asian cases, 227,116 European or East Asian controls	147,200 European ancestry cases, 150,085 European ancestry controls	6q25.1	ESR1	rs2982570-C	0.58	5E-19		1.04	[1.03-1.05]	Affymetrix, Illumina [2539801] (imputed)	N
1744	chr6	152017690	152017691	rs1293936	27393504	Zanetti KA	2016-05-13	Lung Cancer	Genome-wide association study confirms lung cancer susceptibility loci on chromosomes 5p15 and 15q25 in an African-American population.	Smoking status (current vs former)	2029 African American current smoker individuals,  1748 African American former smoker individuals	NA	6q25.1	ESR1	rs1293936-?	NR	5E-7		1.28	[1.16-1.41]	Illumina [1024001]	N
1744	chr6	152021048	152021049	rs73005768	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6q25.1	NR	rs73005768-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
1744	chr6	152027954	152027955	rs851980	30172743	Liang X	2018-08-30	Bone	Assessing the genetic correlations between early growth parameters and bone mineral density: A polygenic risk score analysis.	Bone mineral density (spine)	2,286 European ancestry individuals	NA	6q25.1	ESR1	rs851980-?	NR	9E-6				Affymetrix [753382]	N
1744	chr6	152028478	152028479	rs2347637	34288885	Lin WD	2021-07-01	Eur J Endocrinol	Genetic factors of idiopathic central precocious puberty and their polygenic risk in early puberty.	Idiopathic central precocious puberty	256 Han Chinese ancestry cases, 118 Han Chinese ancestry controls	65 Han Chinese ancestry cases, 30 Han Chinese ancestry controls	6q25.1		rs2347637-G	NR	1E-6		4.73	[2.53-8.84]	Affymetrix [NR] (imputed)	N
1744	chr6	152029607	152029608	rs851977	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	6q25.1		rs851977-C	NR	2E-9		0.0148	[0.0099-0.0197] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
1744	chr6	152029607	152029608	rs851977	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	6q25.1	NR	rs851977-C	NR	3E-9		0.0165	[0.011-0.022] unit increase	Affymetrix [9000000] (imputed)	N
1744	chr6	152029607	152029608	rs851977	31681408	Yang XL	2019-10-11	Front Genet	Three Novel Loci for Infant Head Circumference Identified by a Joint Association Analysis.	Birth length (MTAG)	up to 182,902 European ancestry individuals	NA	6q25.1	NR	rs851977-T	0.789	2E-13		0.055212032	[0.041-0.07] unit increase	NR [1977400] (imputed)	N
1744	chr6	152032916	152032917	rs1101081	27680694	Horikoshi M	2016-10-13	Nature	Genome-wide associations for birth weight and correlations with adult disease.	Birth weight	133,903 European ancestry individuals, 6,635 African American individuals, 420 Turkish ancestry individuals, 365 Moroccan ancestry individuals, 395 Surinamese ancestry individuals, 840 Chinese ancestry individuals.	9,799 European ancestry individuals, 1,449 Filipino ancestry individuals.	6q25.1	ESR1	rs1101081-C	0.73	6E-20		0.037	[0.029-0.045] unit increase	Affymetrix, Illumina [at least 22434434] (imputed)	N
1744	chr6	152034061	152034062	rs3020338	33888516	Zheng T	2021-04-22	Gut	Genome-wide analysis of 944 133 individuals provides insights into the etiology of haemorrhoidal disease.	Haemorrhoidal disease	218,920 European ancestry cases, 725,213 European ancestry controls	NA	6q25.1	ESR1	rs3020338-?	0.2453	2E-9		0.97	[0.96-0.98]	Affymetrix, Illumina [8494288] (imputed)	N
1744	chr6	152037555	152037556	rs2206949	28537267	Sapkota Y	2017-05-24	Nat Commun	Meta-analysis identifies five novel loci associated with endometriosis highlighting key genes involved in hormone metabolism.	Endometriosis	14,926 European ancestry cases, 189,715 European ancestry controls, 2,119 Japanese ancestry cases, 2,143 Japanese ancestry controls	NA	6q25.1	ESR1	rs2206949-T	0.262	3E-7		1.1	1.06-1.14	Affymetrix, Illumina [up to 6979035] (imputed)	N
1744	chr6	152039888	152039889	rs79041188	28644415	Guenard F	2017-06-23	Nutrients	Genome-Wide Association Study of Dietary Pattern Scores.	Western dietary pattern	141 individuals	NA	6q25.1	ESR1	rs79041188-?	NR	2E-6				Illumina [2668805]	N
1744	chr6	152039963	152039964	rs10872678	31681408	Yang XL	2019-10-11	Front Genet	Three Novel Loci for Infant Head Circumference Identified by a Joint Association Analysis.	Birth weight (MTAG)	up to 182,902 European ancestry individuals	NA	6q25.1	NR	rs10872678-T	0.72	2E-18		0.036490615	[0.028-0.045] unit increase	NR [1977400] (imputed)	N
1744	chr6	152039963	152039964	rs10872678	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	6q25.1	ESR1	rs10872678-T	0.723865	1E-28		0.031699	[0.026-0.037] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1744	chr6	152042501	152042502	rs7772579	31097437	Plotnikov D	2019-05-16	Br J Ophthalmol	Association between birth weight and refractive error in adulthood: a Mendelian randomisation study.	Birth weight	188,039 European ancestry individuals	NA	6q25.1	NR	rs7772579-A	0.28	4E-15		0.028	[0.02-0.036] z score increase	Affymetrix [up to 10400000] (imputed)	N
1744	chr6	152042501	152042502	rs7772579	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	6q25.1	ESR1	rs7772579-A	0.718456	6E-10		0.020981	[0.014-0.028] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
1744	chr6	152043289	152043290	rs3020340	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6q25.1	ESR1	rs3020340-G	NR	3E-9		0.0186002	[0.012-0.025] unit increase	Affymetrix [319769] (imputed)	N
1744	chr6	152043289	152043290	rs3020340	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6q25.1	ESR1	rs3020340-G	NR	4E-9		0.0184274	[0.012-0.025] unit increase	Affymetrix [319769] (imputed)	N
1744	chr6	152043289	152043290	rs3020340	27397699	Pei YF	2016-07-07	Bone	Genome-wide association meta-analyses identified 1q43 and 2q32.2 for hip Ward's triangle areal bone mineral density.	Bone mineral density (Ward's triangle area)	4,305 European ancestry individuals,1,579 Chinese Han ancestry individuals, 845 African-American individuals, 446 Hispanic individuals		6q25.1	ESR1	rs3020340-G	NR	2E-6		0.09	[NR] unit increase	Affymetrix, Illumina [at least 9551331] (imputed)	N
1745	chr6	152054373	152054374	rs12195741	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	6q25.1	NR	rs12195741-G	0.31	6E-6	(EA)	2.5	[NR]	Illumina [905956]	N
1745	chr6	152055977	152055978	rs6904031	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6q25.1		rs6904031-T	NR	3E-7		1.1520737	[1.09-1.22]	Affymetrix [7846216] (imputed)	N
1745	chr6	152055977	152055978	rs6904031	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Breast cancer	17,881 European ancestry cases, 410,350 European ancestry controls	NA	6q25.1		rs6904031-T	NR	6E-9		1.1423349	NR	Affymetrix [7846216] (imputed)	N
1745	chr6	152055977	152055978	rs6904031	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6q25.1	NR	rs6904031-T	0.0643	7E-26	(EA)	0.1314	[0.11-0.16] unit increase	Illumina [~ 11800000] (imputed)	N
1745	chr6	152059562	152059563	rs2982552	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6q25.1	ESR1	rs2982552-?	NR	2E-212				Affymetrix [20259828] (imputed)	N
1745	chr6	152059562	152059563	rs2982552	24430505	Moayyeri A	2014-01-14	Hum Mol Genet	Genetic determinants of heel bone properties: genome-wide association meta-analysis and replication in the GEFOS/GENOMOS consortium.	Bone properties (heel)	730 East Asian ancestry individuals, 2,380 European ancestry individuals, 11,150 individuals	11,058 European ancestry individuals, 2,870 European and other ancestry individuals, 21,439 individuals	6q25.1	ESR1, CCDC170	rs2982552-G	0.46	2E-10	(BUA)	0.05	[0.04-0.07] unit decrease	Affymetrix, Illumina [up to 2609590] (imputed)	N
1745	chr6	152064463	152064464	rs3020304	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	6q25.1		rs3020304-?	NR	1E-215				NR [~ 8900000] (imputed)	N
1745	chr6	152068363	152068364	rs1999805	18445777	Styrkarsdottir U	2008-04-29	N Engl J Med	Multiple genetic loci for bone mineral density and fractures.	Bone mineral density (spine)	5,861 European ancestry individuals	7,925 European ancestry individuals	6q25.1	ESR1, C6orf97	rs1999805-C	0.44	2E-8		0.09	[0.06-0.12] s.d. decrease	Illumina [301019]	N
1745	chr6	152075461	152075461	rs11446767	29855537	Hirata T	2018-05-31	Sci Rep	Japanese GWAS identifies variants for bust-size, dysmenorrhea, and menstrual fever that are eQTLs for relevant protein-coding or long non-coding RNAs.	Breast size	5,609 Japanese ancestry female individuals	NA	6q25.1	NR	rs11446767-AT	0.458	5E-8		0.1481	[0.095-0.201] unit increase	Affymetrix [536506]	N
1745	chr6	152080831	152080832	rs60945108	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6q25.1	ESR1	rs60945108-A	0.0090	3E-6	(Light activity )	0.03	[NR] min/d increase	Illumina [899892]	N
1745	chr6	152085274	152085275	rs1890010	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6q25.1		rs1890010-?	NR	1E-103		0.0477196	[0.043-0.052] unit decrease	Affymetrix [20259828] (imputed)	N
1745	chr6	152085516	152085517	rs2504069	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	6q25.1	ESR1	rs2504069-C	0.29282	2E-27		0.0231058	[0.019-0.027] unit decrease	NR [13737936] (imputed)	N
1745	chr6	152085516	152085517	rs2504069	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6q25.1		rs2504069-?	NR	2E-102		0.0473828	[0.043-0.052] unit decrease	Affymetrix [20259828] (imputed)	N
1745	chr6	152085516	152085517	rs2504069	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	6q25.1	ESR1	rs2504069-C	0.292901	5E-21	(men)	0.0536762	[0.043-0.065] unit decrease	NR [17166351] (imputed)	N
1745	chr6	152085516	152085517	rs2504069	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	6q25.1	ESR1	rs2504069-C	0.291872	7E-35		0.0450949	[0.038-0.052] unit decrease	NR [17166351] (imputed)	N
1745	chr6	152085516	152085517	rs2504069	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	6q25.1	ESR1	rs2504069-C	0.290974	4E-16	(women)	0.0399986	[0.03-0.05] unit decrease	NR [17166351] (imputed)	N
1745	chr6	152090706	152090707	rs2504063	19801982	Rivadeneira F	2009-10-04	Nat Genet	Twenty bone-mineral-density loci identified by large-scale meta-analysis of genome-wide association studies.	Bone mineral density (spine)	19,195 European ancestry individuals	NA	6q25.1	ESR1	rs2504063-A	0.40	6E-11		0.08	[0.06-0.10] s.d. decrease	Affymetrix, Illumina [2543686] (imputed)	N
1745	chr6	152100931	152100932	rs115192536	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6q25.1		rs115192536-?	NR	1E-37		0.0533281	[0.045-0.062] unit decrease	Affymetrix [20259828] (imputed)	N
1745	chr6	152110942	152110943	rs543650	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	6q25.1	ESR1	rs543650-T	0.4013	1E-37		0.025	[0.021-0.029] unit decrease	Affymetrix [18391927] (imputed)	N
1745	chr6	152110942	152110943	rs543650	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	6q25.1	ESR1	rs543650-T	0.4	1E-17		0.034	[NR] unit decrease	Affymetrix, Illumina [2834208] (imputed)	N
1745	chr6	152123894	152123895	rs523736	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6q25.1	ESR1	rs523736-G	NR	1E-9		0.0187582	[0.013-0.025] unit decrease	Affymetrix [323123] (imputed)	N
1745	chr6	152124127	152124127	rs376007597	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6q25.1	ESR1	rs376007597-C	NR	1E-9		0.0224862	[0.015-0.03] unit increase	Affymetrix [321016] (imputed)	N
1745	chr6	152125443	152125444	rs488133	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6q25.1	ESR1	rs488133-T	NR	6E-14		0.0224516	[0.017-0.028] unit decrease	Affymetrix [321016] (imputed)	N
1745	chr6	152125443	152125444	rs488133	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6q25.1	ESR1	rs488133-T	0.3382	2E-9		0.0408	[0.027-0.054] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1745	chr6	152126823	152126824	rs2071454	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	6q25.1		rs2071454-G	0.330524	9E-34		0.0260077	[0.022-0.03] unit increase	Illumina [13479295] (imputed)	N
1745	chr6	152126823	152126824	rs2071454	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	41,389 African ancestry individuals	11,364 African ancestry individuals, 253,288 European ancestry individuals	6q25.1	ESR1	rs2071454-G	0.398	2E-10	(AA)	0.044	[0.03-0.058] unit increase	Affymetrix, Illumina [17972582] (imputed)	N
1745	chr6	152126823	152126824	rs2071454	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	41,389 African ancestry individuals	11,364 African ancestry individuals, 253,288 European ancestry individuals	6q25.1	ESR1	rs2071454-G		2E-16				Affymetrix, Illumina [17972582] (imputed)	N
1745	chr6	152126823	152126824	rs2071454	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	25,369 African ancestry women	8,449 African ancestry women, up to 253,288 European ancestry women	6q25.1	ESR1	rs2071454-G	0.397	2E-12	(AA)	0.059	[0.043-0.075] unit increase	Affymetrix, Illumina [19885954] (imputed)	N
1745	chr6	152126823	152126824	rs2071454	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	6q25.1	ESR1	rs2071454-?	NR	9E-46		0.043169484	[0.037-0.049] unit increase	Illumina [27896057] (imputed)	N
1745	chr6	152129587	152129588	rs6914438	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	6q25.1		rs6914438-T	0.330187	5E-11		0.0189183	[0.013-0.025] unit increase	Illumina [13479924] (imputed)	N
1745	chr6	152132608	152132609	rs7766762	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6q25.1	ESR1	rs7766762-A	NR	2E-8		0.0245437	[0.016-0.033] unit increase	Affymetrix [321016] (imputed)	N
1745	chr6	152140575	152140576	rs190930099	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	6q25.1	NR	rs190930099-G	0.005311999999999983	8E-11		0.134766	[0.094-0.176] unit increase	Affymetrix [16577424] (imputed)	N
1745	chr6	152143887	152143888	rs9340789	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	6q25.1	NR	rs9340789-C	NR	2E-9		0.031	[0.021-0.041] unit increase	Affymetrix [9000000] (imputed)	N
1745	chr6	152149434	152149435	rs11155813	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA			rs11155813-T	0.8937	2E-8		0.0129	[0.0084-0.0174] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1745	chr6	152157880	152157881	rs6902771	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	6q25.1		rs6902771-T	NR	4E-24		0.0167	[0.014-0.02] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1745	chr6	152157880	152157881	rs6902771	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6q25.1	NR	rs6902771-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
1745	chr6	152157880	152157881	rs6902771	19581569	Treutlein J	2009-07-01	Arch Gen Psychiatry	Genome-wide association study of alcohol dependence.	Alcohol dependence	476 European ancestry cases, 1,358 European ancestry controls	1,024 European ancestry cases, 996 European ancestry controls	6q25.1	ESR1	rs6902771-C	0.51	8E-6		1.24	[1.13-1.36]	Illumina [524396]	N
1745	chr6	152162226	152162227	rs4870056	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6q25.1		rs4870056-?	NR	3E-83				NR [~ 8900000] (imputed)	N
1745	chr6	152163334	152163335	rs2234693	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA		ESR1	rs2234693-T	0.5437	4E-9		0.0108726	[0.0072-0.0145] unit decrease	NR [13737936] (imputed)	N
1745	chr6	152163334	152163335	rs2234693	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA			rs2234693-?	NR	4E-20		0.0183545	[0.014-0.022] unit decrease	Affymetrix [20259828] (imputed)	N
1745	chr6	152166800	152166801	rs9322332	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	6q25.1	NR	rs9322332-?	NR	4E-6	(female)	0.11141	[0.064-0.159] unit increase	Affymetrix [7794483] (imputed)	N
1745	chr6	152166800	152166801	rs9322332	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	6q25.1	NR	rs9322332-?	NR	2E-15		0.17449	[0.13-0.22] unit increase	Affymetrix [7794483] (imputed)	N
1745	chr6	152166800	152166801	rs9322332	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	6q25.1	NR	rs9322332-?	NR	1E-10	(male)	0.22369	[0.16-0.29] unit increase	Affymetrix [7794483] (imputed)	N
1745	chr6	152170246	152170247	rs3853252	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	6q25.1		rs3853252-A	NR	6E-68		0.0226	[0.02-0.025] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1745	chr6	152170246	152170247	rs3853252	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6q25.1	ESR1	rs3853252-A	NR	9E-13		0.0202419	[0.015-0.026] unit increase	Affymetrix [321016] (imputed)	N
1745	chr6	152170246	152170247	rs3853252	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6q25.1	ESR1	rs3853252-A	NR	2E-10		0.0195664	[0.014-0.026] unit increase	Affymetrix [323123] (imputed)	N
1746	chr6	152180595	152180596	rs78796841	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6q25.1	NR	rs78796841-G	0.0214	8E-7	(EA)	0.1097	[0.066-0.153] unit increase	Illumina [~ 11800000] (imputed)	N
1746	chr6	152201200	152201201	rs6557168	31906708	Levey DF	2020-01-07	Am J Psychiatry	Reproducible Genetic Risk Loci for Anxiety: Results From ~200,000 Participants in the Million Veteran Program.	Anxiety	175,163 European ancestry individuals, 24,448 African American individuals	NA	6q25.1	ESR1	rs6557168-C	NR	1E-9	(EA)			Affymetrix [at least 723305] (imputed)	N
1746	chr6	152215721	152215722	rs11155821	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	6q25.1		rs11155821-?	NR	3E-12				NR [~ 8900000] (imputed)	N
1746	chr6	152218078	152218079	rs11756123	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	6q25.1		rs11756123-?	NR	2E-29		0.0319	unit increase	NR [NR]	N
1746	chr6	152218078	152218079	rs11756123	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	6q25.1	NR	rs11756123-A	0.3479	6E-11		0.015238658	NR unit decrease	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
1746	chr6	152220786	152220787	rs547908752	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6q25.1		rs547908752-?	NR	2E-27		0.0796626	[0.065-0.094] unit increase	Affymetrix [20259828] (imputed)	N
1746	chr6	152227420	152227421	rs2347923	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	6q25.1	NR	rs2347923-C	0.296223	1E-11		0.05195554	[0.037-0.067] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1746	chr6	152229849	152229850	rs2347867	27798627	Barban N	2016-10-31	Nat Genet	Genome-wide analysis identifies 12 loci influencing human reproductive behavior.	Age at first birth	189,656 European ancestry women, 48,408 European ancestry men		6q25.1	ESR1	rs2347867-A	0.649	1E-10		0.091	NR unit increase	Illumina [2400000] (imputed)	N
1746	chr6	152229849	152229850	rs2347867	27798627	Barban N	2016-10-31	Nat Genet	Genome-wide analysis identifies 12 loci influencing human reproductive behavior.	Age at first birth	189,656 European ancestry women		6q25.1	ESR1	rs2347867-A	0.649	2E-9		0.097	NR unit increase	Illumina [2400000] (imputed)	N
1746	chr6	152234592	152234593	rs6557171	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6q25.1		rs6557171-T	0.3232	5E-25		0.0155	[0.013-0.018] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1746	chr6	152235338	152235339	rs12204714	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	6q25.1		rs12204714-C	0.37	5E-11		0.008	[0.006-0.01] unit increase	NR [NR] (imputed)	N
1746	chr6	152235338	152235339	rs12204714	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	6q25.1	ESR1	rs12204714-C	0.368704	8E-38		0.0274771	[0.023-0.032] unit decrease	NR [16516521] (imputed)	N
1746	chr6	152235391	152235392	rs67229052	27089180	Day FR	2016-04-18	Nat Genet	Physical and neurobehavioral determinants of reproductive onset and success.	Age at first birth	66,310 British ancestry females	117,626 European ancestry males, 144,471 European ancestry females	6q25.1	ESR1	rs67229052-TA	0.36	4E-9	(females)	0.11	[0.071-0.149] unit decrease	Affymetrix [641018] (imputed)	N
1746	chr6	152235391	152235392	rs67229052	27089180	Day FR	2016-04-18	Nat Genet	Physical and neurobehavioral determinants of reproductive onset and success.	Age at first birth	66,310 British ancestry females	117,626 European ancestry males, 144,471 European ancestry females	6q25.1	ESR1	rs67229052-TA	0.36	1E-13		0.13	[0.091-0.169] unit decrease	Affymetrix [641018] (imputed)	N
1746	chr6	152240447	152240448	rs4305732	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6q25.1	Intergenic	rs4305732-A	0.3494	3E-23	(MTAG)	0.0137	[0.011-0.016] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1746	chr6	152283278	152283279	rs1884051	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	6q25.1		rs1884051-?	NR	1E-16				NR [~ 8900000] (imputed)	N
1746	chr6	152285686	152285687	rs2982694	21658281	Aouizerat BE	2011-06-10	BMC Cardiovasc Disord	GWAS for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease.	Sudden cardiac arrest	88 European ancestry cases, 517 European ancestry controls	NA	6q25.1	ESR1	rs2982694-?	0.14	7E-10	(Recessive)	1.43	[1.28-1.60]	Affymetrix [319222]	N
1746	chr6	152295612	152295613	rs9383951	22383897	Long J	2012-02-23	PLoS Genet	Genome-wide association study in east Asians identifies novel susceptibility loci for breast cancer.	Breast cancer	2,918 Chinese ancestry cases, 2,324 Chinese ancestry controls	up to 16,173 East Asian ancestry cases, up to 18,282 East Asian ancestry controls	6q25.1	ESR1	rs9383951-G	0.90	2E-6		1.14	[1.08-1.19]	Affymetrix [690947]	N
1746	chr6	152302577	152302578	rs726281	27089180	Day FR	2016-04-18	Nat Genet	Physical and neurobehavioral determinants of reproductive onset and success.	Age at first sexual intercourse	59,357 British ancestry males, 66,310 British ancestry females	NA	6q25.1	ESR1	rs726281-A	0.717916	3E-11		0.0283237	[0.02-0.037] unit increase	Affymetrix [641018] (imputed)	N
1747	chr6	152312414	152312415	rs13192976	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	6q25.1	ESR1	rs13192976-A		8E-7		0.291	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1747	chr6	152312414	152312415	rs13192976	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	6q25.1	ESR1	rs13192976-A		3E-10	(EA)	0.405	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1747	chr6	152312414	152312415	rs13192976	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	6q25.1	ESR1	rs13192976-A		2E-10		0.348	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1747	chr6	152312414	152312415	rs13192976	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	6q25.1	ESR1	rs13192976-A		8E-28		0.43	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1747	chr6	152316317	152316318	rs34375271	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	6q25.1		rs34375271-?	NR	5E-13				NR [~ 8900000] (imputed)	N
1747	chr6	152322884	152322885	rs722208	27016271	Kornilov SA	2016-03-25	Pediatrics	Genome-Wide Association and Exome Sequencing Study of Language Disorder in an Isolated Population.	Developmental language disorder	149 isolated population cases, 210 isolated population controls	NA	6q25.1	ESR1	rs722208-G	0.35	3E-6		0.22	[NR] unit increase	Illumina [223580]	N
1747	chr6	152333103	152333104	rs13203975	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta minimum area	35,110 individuals	NA	6q25.1		rs13203975-G	0.88525	9E-16		0.086822	[0.065-0.108] increase	Affymetrix [NR]	N
1747	chr6	152333103	152333104	rs13203975	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta maximum area	31,908 individuals	NA	6q25.1		rs13203975-G	0.884885	3E-14		0.0876644	[0.065-0.111] increase	Affymetrix [NR]	N
1747	chr6	152339974	152339974	rs34862067	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	6q25.1		rs34862067-AAAG	NR	1E-9		0.0238	[0.016-0.031] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1747	chr6	152339974	152339974	rs34862067	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	6q25.1	ESR1	rs34862067-AAAG	0.88	3E-12		0.3753	[0.27-0.48] mmHg decrease	Affymetrix [NR] (imputed)	N
1747	chr6	152341586	152341587	rs9340985	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	6q25.1		rs9340985-C	NR	6E-9		0.0215	[0.014-0.029] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1747	chr6	152341586	152341587	rs9340985	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	6q25.1		rs9340985-C	NR	1E-41		0.0475	[0.041-0.054] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
1747	chr6	152342778	152342779	rs9340995	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	6q25.1	ESR1	rs9340995-C	0.1236	6E-32		0.4665	[0.39-0.54] mmHg increase	Affymetrix [NR] (imputed)	N
1747	chr6	152343950	152343950	rs112714881	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	6q25.1	NR	rs112714881-T	0.675274	7E-9		0.0187752	[0.012-0.025] unit increase	Affymetrix [16577424] (imputed)	N
1747	chr6	152345161	152345162	rs3020418	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	6q25.1	ESR1	rs3020418-A	0.296	8E-24		0.032	[0.026-0.038] unit increase	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
1747	chr6	152348121	152348122	rs3020421	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6q25.1	ESR1	rs3020421-A	0.3339	5E-7		0.0342	[0.021-0.048] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1747	chr6	152354560	152354561	rs9383605	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6q25.1	ESR1	rs9383605-T	NR	1E-9		0.0189707	[0.013-0.025] unit increase	Affymetrix [321016] (imputed)	N
1747	chr6	152354560	152354561	rs9383605	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	6q25.1	NR	rs9383605-A	0.704796	2E-9		0.0190165	[0.012-0.026] unit increase	Affymetrix [16577313] (imputed)	N
1747	chr6	152355155	152355156	rs9479169	31757997	Low SK	2019-11-22	Sci Rep	Identification of two novel breast cancer loci through large-scale genome-wide association study in the Japanese population.	Breast cancer	6,669 Japanese ancestry cases, 21,930 Japanese ancestry controls	981 Japanese ancestry cases, 1,394 Japanese ancestry controls	6q25.1	ESR1	rs9479169-C	0.4907	1E-7		1.1070544	[1.07-1.15]	Illumina [4946503] (imputed)	N
1747	chr6	152356219	152356220	rs2982708	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	6q25.1	ESR1	rs2982708-C	0.286637	2E-10		0.0174	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1747	chr6	152356219	152356220	rs2982708	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	6q25.1	ESR1	rs2982708-C	0.286637	1E-14	(females)	0.02481	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1747	chr6	152356219	152356220	rs2982708	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	6q25.1	ESR1	rs2982708-C	0.286637	5E-8		0.01647	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1747	chr6	152356219	152356220	rs2982708	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	6q25.1	ESR1	rs2982708-C	0.286637	2E-11	(females)	0.02281	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1747	chr6	152356648	152356649	rs3020429	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6q25.1		rs3020429-?	NR	9E-72				NR [~ 8900000] (imputed)	N
1747	chr6	152358178	152358179	rs2982712	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6q25.1	ESR1	rs2982712-C	NR	3E-10		0.0179708	[0.012-0.024] unit increase	Affymetrix [321016] (imputed)	N
1747	chr6	152358178	152358179	rs2982712	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	6q25.1	ESR1	rs2982712-C	0.47	4E-10		1.17	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
1747	chr6	152365262	152365263	rs3020359	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	6q25.1	ESR1	rs3020359-?	NR	1E-10		0.018333314	[0.013-0.024] unit increase	Illumina [27896057] (imputed)	N
1747	chr6	152365869	152365870	rs6926520	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6q25.1	ESR1	rs6926520-G	NR	1E-9		0.0193157	[0.013-0.026] unit increase	Affymetrix [321016] (imputed)	N
1747	chr6	152384927	152384928	rs3020372	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6q25.1	NR	rs3020372-?	NR	9E-12				Affymetrix [~ 8270000] (imputed)	N
1747	chr6	152395962	152395963	rs7766549	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Diastolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	6q25.1	ESR1	rs7766549-C	0.6284	9E-11		0.2259	[0.16-0.29] mmHg increase	Affymetrix [NR] (imputed)	N
1747	chr6	152397912	152397912	rs36083386	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Pulse pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	6q25.1	ESR1	rs36083386-?	0.11	2E-18		0.439	[0.34-0.54] unit increase	Affymetrix [~ 9800000] (imputed)	N
1747	chr6	152408658	152408659	rs9322356	33888516	Zheng T	2021-04-22	Gut	Genome-wide analysis of 944 133 individuals provides insights into the etiology of haemorrhoidal disease.	Haemorrhoidal disease	218,920 European ancestry cases, 725,213 European ancestry controls	NA	6q25.1	ESR1	rs9322356-?	0.0837	2E-8		1.04	[1.03-1.06]	Affymetrix, Illumina [8494288] (imputed)	N
1747	chr6	152421853	152421854	rs3798758	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	6q25.2	ESR1	rs3798758-?	NR	1E-7		0.016889589	[0.011-0.023] unit decrease	Illumina [27896057] (imputed)	N
1747	chr6	152432901	152432902	rs910416	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6q25.2		rs910416-T	NR	5E-12		1.091703	[1.06-1.12]	Affymetrix [7846216] (imputed)	N
1747	chr6	152432901	152432902	rs910416	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Breast cancer	17,881 European ancestry cases, 410,350 European ancestry controls	NA	6q25.2		rs910416-T	NR	6E-16		1.0945709	NR	Affymetrix [7846216] (imputed)	N
1748	chr6	152437015	152437016	rs2747652	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	6q25.2		rs2747652-T	NR	6E-28		0.94	[0.93-0.95]	Affymetrix, Illumina [NR] (imputed)	N
1748	chr6	152437015	152437016	rs2747652	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6q25.2	ESR1	rs2747652-C	0.52	1E-26	(EA)	1.0638298	[1.04-1.09] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
1748	chr6	152437015	152437016	rs2747652	29058716	Milne RL	2017-10-23	Nat Genet	Identification of ten variants associated with risk of estrogen-receptor-negative breast cancer.	Breast cancer (estrogen-receptor negative)	14,135 European ancestry cases, 58,126 European ancestry controls	7,333 European ancestry cases, 42,468 European ancestry controls	6q25.2	ESR1	rs2747652-C	0.52	2E-18		1.098901	[1.08-1.12]	Illumina [~ 11500000] (imputed)	N
1748	chr6	152438297	152438298	rs73625123	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	6q25.2	ESR1	rs73625123-T	0.0014	1E-6		0.9212	[0.55-1.29] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1748	chr6	152461702	152461703	rs111550108	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6q25.2		rs111550108-?	NR	7E-16				NR [~ 8900000] (imputed)	N
1748	chr6	152462042	152462043	rs148476337	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip	15 Asian ancestry cases, 13 European ancestry cases, 15 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	6q25.2	NR	rs148476337-?	NR	1E-6		3.35	[2.55-4.4]	Illumina [539000] (imputed)	N
1748	chr6	152468383	152468384	rs2813490	25742292	Aschebrook-Kilfoy B	2015-03-05	PLoS One	Genome-wide association study of parity in Bangladeshi women.	Number of pregnancies	1,686 Bangladeshi women	NA	6q25.2	NR	rs2813490-?		7E-6		0.27	unit decrease	Illumina [1211988] (imputed)	N
1748	chr6	152476951	152476952	rs2813495	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	6q25.2	SYNE1	rs2813495-G	0.22474	7E-16		0.0178081	[0.013-0.022] unit decrease	NR [13737936] (imputed)	N
1748	chr6	152476951	152476952	rs2813495	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6q25.2		rs2813495-?	NR	2E-9		0.0146959	[0.0098-0.0195] unit decrease	Affymetrix [20259828] (imputed)	N
1748	chr6	152487183	152487184	rs2635471	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	6q25.2	SYNE1	rs2635471-A	0.8541	5E-12		0.0183	[0.013-0.024] unit decrease	Affymetrix [18391927] (imputed)	N
1748	chr6	152489829	152489830	rs41291049	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		SYNE1	rs41291049-?	NR	3E-8		0.656593	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1748	chr6	152552918	152552919	rs557408368	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6q25.2		rs557408368-?	NR	1E-11		0.0358428	[0.025-0.046] unit increase	Affymetrix [20259828] (imputed)	N
1748	chr6	152553717	152553718	rs17803970	28537267	Sapkota Y	2017-05-24	Nat Commun	Meta-analysis identifies five novel loci associated with endometriosis highlighting key genes involved in hormone metabolism.	Endometriosis	14,926 European ancestry cases, 189,715 European ancestry controls, 2,119 Japanese ancestry cases, 2,143 Japanese ancestry controls	NA	6q25.2	SYNE1	rs17803970-A	0.92	7E-8		1.15	1.09-1.21	Affymetrix, Illumina [up to 6979035] (imputed)	N
1748	chr6	152553717	152553718	rs17803970	28537267	Sapkota Y	2017-05-24	Nat Commun	Meta-analysis identifies five novel loci associated with endometriosis highlighting key genes involved in hormone metabolism.	Endometriosis	14,926 European ancestry cases, 189,715 European ancestry controls, 2,119 Japanese ancestry cases, 2,143 Japanese ancestry controls	NA	6q25.2	SYNE1	rs17803970-A	0.92	1E-7	(EA)	1.15	1.09-1.21	Affymetrix, Illumina [up to 6979035] (imputed)	N
1748	chr6	152554013	152554014	rs71575922	30194396	Rafnar T	2018-09-07	Nat Commun	Variants associating with uterine leiomyoma highlight genetic background shared by various cancers and hormone-related traits.	Uterine fibroids	16,595 European ancestry cases, 523,330 European ancestry controls	NA	6q25.2	SYNE1	rs71575922-G	NR	4E-8		1.17	[1.11-1.24]	Affymetrix, Illumina [43421991] (imputed)	N
1748	chr6	152554013	152554014	rs71575922	28537267	Sapkota Y	2017-05-24	Nat Commun	Meta-analysis identifies five novel loci associated with endometriosis highlighting key genes involved in hormone metabolism.	Endometriosis	14,926 European ancestry cases, 189,715 European ancestry controls, 2,119 Japanese ancestry cases, 2,143 Japanese ancestry controls	NA	6q25.2	SYNE1	rs71575922-G	0.16	2E-8	(EA)	1.11	1.07-1.16	Affymetrix, Illumina [up to 6979035] (imputed)	N
1748	chr6	152554013	152554014	rs71575922	28537267	Sapkota Y	2017-05-24	Nat Commun	Meta-analysis identifies five novel loci associated with endometriosis highlighting key genes involved in hormone metabolism.	Endometriosis	14,926 European ancestry cases, 189,715 European ancestry controls, 2,119 Japanese ancestry cases, 2,143 Japanese ancestry controls	NA	6q25.2	SYNE1	rs71575922-G	0.16	2E-8		1.11	1.07-1.15	Affymetrix, Illumina [up to 6979035] (imputed)	N
1748	chr6	152562270	152562271	rs58415480	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Uterine fibroids	21,024 European ancestry cases, 237,694 European ancestry controls, 14,475 East Asian ancestry cases, 65,733 East Asian ancestry controls	NA	6q25.2		rs58415480-G	NR	7E-46		0.1999	[0.17-0.23] unit increase	Affymetrix, Illumina [25795146] (imputed)	N
1748	chr6	152562270	152562271	rs58415480	31649266	Gallagher CS	2019-10-24	Nat Commun	Genome-wide association and epidemiological analyses reveal common genetic origins between uterine leiomyomata and endometriosis.	Uterine fibroids	20,406 European ancestry cases, 223,918 European ancestry controls	15,068 European ancestry cases, 43,587 European ancestry controls	6q25.2	SYNE1, ESR1	rs58415480-C	0.84	2E-54		1.19	[1.17-1.22]	Affymetrix, Illumina [8662096] (imputed)	N
1748	chr6	152562270	152562271	rs58415480	31649266	Gallagher CS	2019-10-24	Nat Commun	Genome-wide association and epidemiological analyses reveal common genetic origins between uterine leiomyomata and endometriosis.	Uterine fibroids	20,406 European ancestry cases, 223,918 European ancestry controls	15,068 European ancestry cases, 43,587 European ancestry controls	6q25.2		rs58415480-C	0.8439	2E-54		0.1748	[0.15-0.2] unit decrease	Affymetrix, Illumina [8662096] (imputed)	N
1748	chr6	152562270	152562271	rs58415480	31249589	Edwards TL	2019-06-12	Front Genet	A Trans-Ethnic Genome-Wide Association Study of Uterine Fibroids.	Uterine fibroids	8,168 European ancestry cases, 65,134 European ancestry controls, 1,278 African ancestry cases, 1,914 African ancestry  controls	12,111 European ancestry cases, 138,477 European ancestry controls, 247 African ancestry cases, 713 African ancestry controls	6q25.2	SYNE1	rs58415480-G	0.16	2E-31		1.1904762	[1.15-1.22]	Affymetrix, Illumina [NR] (imputed)	N
1748	chr6	152562270	152562271	rs58415480	30194396	Rafnar T	2018-09-07	Nat Commun	Variants associating with uterine leiomyoma highlight genetic background shared by various cancers and hormone-related traits.	Uterine fibroids	16,595 European ancestry cases, 523,330 European ancestry controls	NA	6q25.2	SYNE1	rs58415480-G	0.14157	9E-24		1.18	[1.14-1.22]	Affymetrix, Illumina [43421991] (imputed)	N
1748	chr6	152562966	152562967	rs13195723	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	6q25.2	SYNE1	rs13195723-T	0.554339	2E-22		0.018118	[0.014-0.022] unit increase	NR [13737936] (imputed)	N
1748	chr6	152562966	152562967	rs13195723	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	6q25.2		rs13195723-?	NR	2E-20				NR [~ 8900000] (imputed)	N
1748	chr6	152567046	152567047	rs6901631	31649266	Gallagher CS	2019-10-24	Nat Commun	Genome-wide association and epidemiological analyses reveal common genetic origins between uterine leiomyomata and endometriosis.	Uterine fibroids	20,406 European ancestry cases, 223,918 European ancestry controls	15,068 European ancestry cases, 43,587 European ancestry controls	6q25.2		rs6901631-T	0.8634	2E-15		0.0946	[0.071-0.118] unit increase	Affymetrix, Illumina [8662096] (imputed)	N
1748	chr6	152567046	152567047	rs6901631	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	6q25.2	SYNE1	rs6901631-T	0.865228	9E-11		0.0174659	[0.012-0.023] unit decrease	NR [13737936] (imputed)	N
1749	chr6	152570273	152570274	rs17215781	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6q25.2		rs17215781-?	NR	9E-14		0.029709	[0.022-0.037] unit decrease	Affymetrix [20259828] (imputed)	N
1749	chr6	152574499	152574500	rs7740449	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6q25.2		rs7740449-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1749	chr6	152592750	152592751	rs633891	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6q25.2		rs633891-?	NR	9E-16		0.0164718	[0.012-0.021] unit increase	Affymetrix [20259828] (imputed)	N
1749	chr6	152592750	152592751	rs633891	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	6q25.2	SYNE1	rs633891-C	0.561729	3E-8		0.019771	[0.013-0.026] unit increase	NR [17166351] (imputed)	N
1749	chr6	152592750	152592751	rs633891	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	6q25.2	SYNE1	rs633891-C	0.560816	4E-7	(women)	0.0237454	[0.015-0.033] unit increase	NR [17166351] (imputed)	N
1749	chr6	152593101	152593102	rs6904757	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6q25.2	SYNE1	rs6904757-G	NR	1E-8		0.0167018	[0.011-0.022] unit increase	Affymetrix [321016] (imputed)	N
1749	chr6	152593101	152593102	rs6904757	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	6q25.2		rs6904757-?	NR	6E-17				NR [~ 8900000] (imputed)	N
1749	chr6	152637033	152637034	rs59071593	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	6q25.2	SYNE1	rs59071593-T	0.845	9E-7	(AA)	0.107	NR unit increase	Illumina [NR] (imputed)	N
1749	chr6	152638481	152638482	rs75556600	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	6q25.2	SYNE1	rs75556600-T	0.862	1E-6	(AA)	0.114	NR unit increase	Illumina [NR] (imputed)	N
1749	chr6	152641390	152641391	rs17082463	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	6q25.2	SYNE1	rs17082463-G	0.844	8E-7	(AA)	0.106	NR unit increase	Illumina [NR] (imputed)	N
1749	chr6	152641655	152641656	rs7741183	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	6q25.2	SYNE1	rs7741183-C	0.162	4E-7	(AA)	0.108	NR unit decrease	Illumina [NR] (imputed)	N
1749	chr6	152643834	152643835	rs73783833	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	6q25.2	SYNE1	rs73783833-T	0.844	1E-6	(AA)	0.105	NR unit increase	Illumina [NR] (imputed)	N
1749	chr6	152644994	152644995	rs73783837	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	6q25.2	SYNE1	rs73783837-G	0.834	4E-6	(AA)	0.098	NR unit increase	Illumina [NR] (imputed)	N
1749	chr6	152645133	152645134	rs73783839	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	6q25.2	SYNE1	rs73783839-G	0.843	2E-6	(AA)	0.104	NR unit increase	Illumina [NR] (imputed)	N
1749	chr6	152664538	152664539	rs35569312	30194396	Rafnar T	2018-09-07	Nat Commun	Variants associating with uterine leiomyoma highlight genetic background shared by various cancers and hormone-related traits.	Uterine fibroids	16,595 European ancestry cases, 523,330 European ancestry controls	NA	6q25.2	SYNE1	rs35569312-T	0.13579	5E-10		1.11	[1.08-1.15]	Affymetrix, Illumina [43421991] (imputed)	N
1749	chr6	152667930	152667931	rs9322369	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	6q25.2	SYNE1	rs9322369-T	0.37	2E-6	(AA)	0.079	NR unit increase	Illumina [NR] (imputed)	N
1749	chr6	152675892	152675893	rs79486252	31358989	Gelernter J	2019-07-29	Nat Neurosci	Genome-wide association study of post-traumatic stress disorder reexperiencing symptoms in >165,000 US veterans.	Post-traumatic stress disorder (re-experiencing symptoms)	146,660 European ancestry individuals, 19,983 African American individuals	117,900 European ancestry individuals	6q25.2	NR	rs79486252-?	NR	2E-6	(AA)	0.823782	[NR] unit decrease	Affymetrix [49134253] (imputed)	N
1750	chr6	152714605	152714606	rs1203233	28072414	Charney AW	2017-01-10	Transl Psychiatry	Evidence for genetic heterogeneity between clinical subtypes of bipolar disorder.	Bipolar disorder	13,903 European ancestry cases, 19,279 European ancestry controls.	NA	6q25.2	SYNE1	rs1203233-?	NR	4E-8		1.1		Affymetrix, Illumina [8837380] (imputed)	N
1750	chr6	152738753	152738754	rs17082664	20351715	Liu Y	2010-03-30	Mol Psychiatry	Meta-analysis of genome-wide association data of bipolar disorder and major depressive disorder.	Bipolar disorder or major depressive disorder	4,387 European and unknown ancestry bipolar disorder cases, 1,695 major depressive disorder cases, 7,970 European and unknown ancestry controls	NA	6q25.2	SYNE1	rs17082664-?	NR	1E-6				Affymetrix, Perlegen [1472580] (imputed)	N
1750	chr6	152738753	152738754	rs17082664	20351715	Liu Y	2010-03-30	Mol Psychiatry	Meta-analysis of genome-wide association data of bipolar disorder and major depressive disorder.	Bipolar disorder	4,387 European and unknown ancestry cases, 6,209 European and unknown ancestry controls	NA	6q25.2	SYNE1	rs17082664-?	NR	4E-6				Affymetrix [1769948] (imputed)	N
1750	chr6	152738753	152738754	rs17082664	18711365	Ferreira MA	2008-08-17	Nat Genet	Collaborative genome-wide association analysis supports a role for ANK3 and CACNA1C in bipolar disorder.	Bipolar disorder	4,387 European ancestry cases, 6,209 European ancestry controls	NA	6q25.2	NR	rs17082664-G	0.13	4E-6		1.22	[NR]	Affymetrix [1769948] (imputed)	N
1750	chr6	152790572	152790573	rs9371601	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	6q25.2	SYNE1	rs9371601-T	0.349	1E-7		1.06258	[1.04-1.09]	NR [9372253] (imputed)	N
1750	chr6	152790572	152790573	rs9371601	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar I disorder	14,879 European ancestry cases, 31,358 European ancestry controls	NA	6q25.2	SYNE1	rs9371601-T	0.349	1E-6		1.07983		NR [9372253] (imputed)	N
1750	chr6	152790572	152790573	rs9371601	23453885	Smoller JW	2013-02-27	Lancet	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NA	6q25.2	SYNE1	rs9371601-?	0.346	4E-9	(Modelling analysis)			NR [1252901] (imputed)	N
1750	chr6	152790572	152790573	rs9371601	21926972	Sklar P	2011-09-18	Nat Genet	Large-scale genome-wide association analysis of bipolar disorder identifies a new susceptibility locus near ODZ4.	Bipolar disorder	7,481 European ancestry cases, 9,250 European ancestry controls	4,496 European ancestry cases, 42,422 European ancestry controls	6q25.2	SYNE1	rs9371601-T	NR	7E-7		1.1	[NR]	Affymetrix, Illumina [2415422] (imputed)	N
1750	chr6	152791473	152791474	rs7747960	21738484	Smith EN	2011-06-30	PLoS Genet	Genome-wide association of bipolar disorder suggests an enrichment of replicable associations in regions near genes.	Bipolar disorder	1,190 European and unknown ancestry cases, 401 European and unknown ancestry controls	16,179 individuals	6q25.2	SYNE1	rs7747960-A	NR	9E-6		1.23	[NR]	Affymetrix [703019]	N
1750	chr6	152793411	152793412	rs4523096	28115744	Ikeda M	2017-01-24	Mol Psychiatry	A genome-wide association study identifies two novel susceptibility loci and trans population polygenicity associated with bipolar disorder.	Bipolar disorder	2,964 Japanese ancestry case, 61,887 Japanese ancestry controls, 7,481 European ancestry cases, 9,250 European ancestry controls	NA	6q25.2	SYNE1	rs4523096-A	NR	7E-8		1.15455	[1.09573-1.21652]	Illumina [at least 6195093] (imputed)	N
1750	chr6	152793571	152793572	rs4331993	34002096	Mullins N	2021-05-17	Nat Genet	Genome-wide association study of more than 40,000 bipolar disorder cases provides new insights into the underlying biology.	Bipolar disorder	41,917 European ancestry cases, 371,549 European ancestry controls	NA	6q25.2	SYNE1	rs4331993-T	0.618	2E-8		0.94677	[0.93-0.97]	Affymetrix, Illumina [7549318] (imputed)	N
1751	chr6	152915795	152915796	rs818452	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	RANTES levels	3,421 Finnish ancestry individuals	NA	6q25.2	NR	rs818452-C		2E-6		0.2381	[0.14-0.34] SD units decrease	NR [10700000] (imputed)	N
1751	chr6	152947952	152947953	rs1322512	17903302	Levy D	2007-09-19	BMC Med Genet	Framingham Heart Study 100K Project: genome-wide associations for blood pressure and arterial stiffness.	Tonometry	644 individuals	NA	6q25.2	SYNE1	rs1322512-?	NR	8E-6	(MAP)			Affymetrix [70897]	N
1752	chr6	153012163	153012164	rs76794875	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	6q25.2		rs76794875-T	0.026693	4E-11		0.046013337	[0.032-0.06] unit increase	Affymetrix [93095623] (imputed)	N
1752	chr6	153038604	153038605	rs9479376	31497858	Dumitrescu L	2019-09-01	Brain	Sex differences in the genetic predictors of Alzheimer's pathology.	Neurofibrillary tangles	3,275 European ancestry women	NA	6q25.2	MYCT1	rs9479376-T	0.387886	5E-6		0.359847	[0.21-0.51] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1752	chr6	153043034	153043035	rs17710008	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	6q25.2		rs17710008-A	NR	2E-15		0.0209	[0.016-0.026] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
1752	chr6	153043034	153043035	rs17710008	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	6q25.2		rs17710008-A	NR	2E-9		0.0167	[0.011-0.022] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
1752	chr6	153043034	153043035	rs17710008	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	6q25.2		rs17710008-A	NR	9E-20		0.0229	[0.018-0.028] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
1752	chr6	153043034	153043035	rs17710008	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	6q25.2	MYCT1	rs17710008-G	0.816151	4E-22		0.00635293	[0.005-0.0077] unit decrease	Affymetrix [13995440] (imputed)	N
1752	chr6	153043034	153043035	rs17710008	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	6q25.2	MYCT1	rs17710008-G	0.816163	1E-9		0.00310765	[0.0021-0.0041] unit decrease	Affymetrix [13995440] (imputed)	N
1752	chr6	153043034	153043035	rs17710008	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	6q25.2	MYCT1	rs17710008-A	0.19	1E-8		5.67	z-score increase	Affymetrix [4312306] (imputed)	N
1752	chr6	153043034	153043035	rs17710008	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6q25.2	MYCT1	rs17710008-A	0.184415	9E-16		0.022789488	[0.017-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1752	chr6	153043034	153043035	rs17710008	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	6q25.2	MYCT1	rs17710008-A	0.184477	1E-11		0.019486746	[0.014-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1752	chr6	153043034	153043035	rs17710008	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6q25.2	MYCT1	rs17710008-A	0.184486	3E-11		0.019108046	[0.013-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1752	chr6	153043034	153043035	rs17710008	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6q25.2	MYCT1	rs17710008-A	0.184429	7E-14		0.02124855	[0.016-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1752	chr6	153043034	153043035	rs17710008	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	6q25.2	MYCT1	rs17710008-A	0.184529	3E-13		0.02081525	[0.015-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1752	chr6	153043034	153043035	rs17710008	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6q25.2	MYCT1	rs17710008-A	0.184522	3E-13		0.02073405	[0.015-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1752	chr6	153043034	153043035	rs17710008	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q25.2	NR	rs17710008-A	0.164636	5E-19				Affymetrix, Illumina [24649327] (imputed)	N
1752	chr6	153043034	153043035	rs17710008	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	6q25.2	NR	rs17710008-A	0.180484	6E-20		0.021901	[0.017-0.027] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
1752	chr6	153043034	153043035	rs17710008	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	6q25.2	NR	rs17710008-A	0.181599	1E-10		0.0157	[0.011-0.02] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
1752	chr6	153043034	153043035	rs17710008	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q25.2	NR	rs17710008-A	0.169396	1E-14				Affymetrix, Illumina [23472807] (imputed)	N
1752	chr6	153043034	153043035	rs17710008	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	6q25.2	NR	rs17710008-A	0.18168	4E-17		0.020604	[0.016-0.025] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1752	chr6	153043034	153043035	rs17710008	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	6q25.2		rs17710008-?	NR	2E-16				NR [~ 8900000] (imputed)	N
1752	chr6	153061374	153061375	rs142952476	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	6q25.2		rs142952476-A	NR	2E-9		0.0167	[0.011-0.022] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
1753	chr6	153106505	153106506	rs12194558	34337005	Duan H	2021-07-17	Biomed Res Int	A Genome-Wide Association Study of Age-Related Hearing Impairment in Middle- and Old-Aged Chinese Twins.	Hearing function (0.5 kHz)	131 Chinese ancestry dizygotic twin pairs	NA	6q25.2		rs12194558-?	NR	9E-6				Illumina [1365315]	N
1753	chr6	153129614	153129615	rs827751	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	6q25.2		rs827751-A	0.3281	2E-17		0.019	[0.015-0.023] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
1753	chr6	153129662	153129663	rs827749	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	6q25.2	VIP, FBXO5	rs827749-T	0.6682	9E-30		0.0203698	[0.017-0.024] unit decrease	Affymetrix [11880941] (imputed)	N
1753	chr6	153135338	153135339	rs9479402	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	6q25.2		rs9479402-T	0.9893	1E-22		0.102	[0.082-0.122] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
1753	chr6	153135338	153135339	rs9479402	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	6q25.2	VIP, FBXO5	rs9479402-C	0.011700000000000044	4E-33		1.2335019		Affymetrix [11880941] (imputed)	N
1753	chr6	153135338	153135339	rs9479402	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	6q25.2	VIP, FBXO5	rs9479402-C	0.011700000000000044	4E-33		1.2443334		Affymetrix [11880941] (imputed)	N
1753	chr6	153135338	153135339	rs9479402	26835600	Hu Y	2016-02-02	Nat Commun	GWAS of 89,283 individuals identifies genetic variants associated with self-reporting of being a morning person.	Morning vs. evening chronotype	38,937 European ancestry morning chronotype individuals, 50,346 European ancestry evening chronotype individuals	NA	6q25.2	VIP	rs9479402-C	0.01	4E-11		1.4492754		Illumina [7427422] (imputed)	N
1753	chr6	153135377	153135378	rs520954	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	6q25.2		rs520954-?	NR	1E-19				NR [~ 8900000] (imputed)	N
1753	chr6	153221878	153221879	rs12529459	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 11, projection of the nose)	2,187 European ancestry individuals	NA	6q25.2	NR	rs12529459-C	0.008712	7E-7		0.8093	[0.49-1.13] unit increase	Illumina [10677593] (imputed)	N
1754	chr6	153265209	153265210	rs13218732	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NA	6q25.2	intergenic	rs13218732-?	0.97	3E-6		1.16	[1.09-1.23]	Affymetrix, Illumina [~ 2300000] (imputed)	N
1754	chr6	153271437	153271438	rs73633773	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	6q25.2	NR	rs73633773-?	NR	4E-6		10667.331	NR unit decrease	Illumina [2379855]	N
1754	chr6	153274599	153274600	rs111642325	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	6q25.2		rs111642325-C	0.292068	3E-11		0.016531274	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1754	chr6	153301418	153301422	rs141047792	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Systolic blood pressure change trajectory	5,304 African American individuals, 13,137 European ancestry individuals, 1,317 Hispanic individuals, 1,439 admixed individuals, 703 Chinese ancestry individuals	6,500 African American individuals, 2,451 European ancestry individuals, 2,869 Hispanic individuals	6q25.2	NR	rs141047792-G	0.98	4E-7		0.4387	[0.27-0.61] mmHg increase	Affymetrix, Illumina [NR] (imputed)	N
1754	chr6	153301418	153301422	rs141047792	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Systolic blood pressure change trajectory	5,304 African American individuals	6,500 African American individuals	6q25.2	NR	rs141047792-G	0.98	5E-7		0.4414	[0.27-0.61] mmHg increase	Affymetrix, Illumina [NR] (imputed)	N
1754	chr6	153311969	153311970	rs9479479	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Amygdala volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	6q25.2	MTRF1L	rs9479479-?		9E-6				Illumina [4322238] (imputed)	N
1754	chr6	153320420	153320423	rs68115660	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	6q25.2	MTRF1L	rs68115660-A	0.502898	2E-9		0.0132481335	[0.0089-0.0176] unit increase	Affymetrix [93095623] (imputed)	N
1754	chr6	153320617	153320618	rs62436127	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	6q25.2		rs62436127-C	0.1596	1E-18		0.026	[0.02-0.032] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
1754	chr6	153320617	153320618	rs62436127	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	6q25.2	MTRF1L	rs62436127-C	0.162	3E-27		1.0556		Affymetrix [11880941] (imputed)	N
1754	chr6	153320617	153320618	rs62436127	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	6q25.2	MTRF1L	rs62436127-C	0.162	3E-27		0.024844	[0.02-0.029] unit increase	Affymetrix [11880941] (imputed)	N
1754	chr6	153320617	153320618	rs62436127	26835600	Hu Y	2016-02-02	Nat Commun	GWAS of 89,283 individuals identifies genetic variants associated with self-reporting of being a morning person.	Morning vs. evening chronotype	38,937 European ancestry morning chronotype individuals, 50,346 European ancestry evening chronotype individuals	NA	6q25.2	NR	rs62436127-?	NR	2E-8				Illumina [7427422] (imputed)	N
1754	chr6	153333549	153333550	rs503366	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6q25.2	MTRF1L	rs503366-C	0.497	1E-11	(Peptide chain release factor 1-like, mitochondrial, MTRF1L.11134.30.3)	0.17	[0.13-0.21] unit increase	Affymetrix [10572788] (imputed)	N
1755	chr6	153364642	153364643	rs7755574	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	6q25.2		rs7755574-T	NR	2E-17		0.0172	[0.013-0.021] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1755	chr6	153374167	153374167	rs397955606	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	6q25.2		rs397955606-CT	NR	1E-11		0.0159	[0.011-0.02] unit increase	Affymetrix, Illumina [20529698] (imputed)	N
1755	chr6	153374481	153374482	rs9383643	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	6q25.2	NR	rs9383643-A	0.715852	2E-11		0.0154602	[0.011-0.02] unit decrease	NR [NR]	N
1755	chr6	153375906	153375907	rs7749708	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		6q25.2	RGS17	rs7749708-C	0.706341	4E-11		0.00998267	[0.007-0.0129] unit decrease	Affymetrix [12370749]	N
1755	chr6	153375906	153375907	rs7749708	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	6q25.2		rs7749708-?	NR	3E-12				NR [~ 8900000] (imputed)	N
1755	chr6	153375906	153375907	rs7749708	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	6q25.2	Intergenic	rs7749708-C	0.6975	6E-10		0.0153	[0.01-0.02] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1755	chr6	153381621	153381622	rs2185027	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	6q25.2	NR	rs2185027-A	NR	5E-8		0.015	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
1755	chr6	153381621	153381622	rs2185027	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	6q25.2	RGS17	rs2185027-C	0.29	3E-11		0.016	[0.012-0.02] unit increase	Illumina [6108953] (imputed)	N
1755	chr6	153384195	153384196	rs1933262	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Cuneus cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	6q25.2	RGS17	rs1933262-?		7E-6				Illumina [4322238] (imputed)	N
1755	chr6	153386941	153386942	rs6913406	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	6q25.2	Intergenic	rs6913406-A	0.2996	4E-10	(MTAG)	0.0122	[0.0083-0.0161] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1755	chr6	153391617	153391618	rs1933264	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	6q25.2	Intergenic	rs1933264-T	0.7453	4E-14	(MTAG)	0.0143	[0.011-0.018] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1755	chr6	153391617	153391618	rs1933264	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6q25.2		rs1933264-T	0.7491	6E-10		0.01	[0.0069-0.0131] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1755	chr6	153391617	153391618	rs1933264	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6q25.2	Intergenic	rs1933264-T	0.7491	3E-12	(MTAG)	0.0105	[0.0076-0.0134] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1755	chr6	153394078	153394080	rs34373600	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	163,835 East Asian ancestry individuals	NA	6q25.2		rs34373600-A	0.606995	9E-10		0.0198484	[0.013-0.026] unit increase	Illumina [13479178] (imputed)	N
1755	chr6	153394727	153394728	rs4385321	33290408	Ray D	2020-12-08	PLoS Genet	A powerful method for pleiotropic analysis under composite null hypothesis identifies novel shared loci between Type 2 Diabetes and Prostate Cancer.	Type 2 diabetes or prostate cancer (pleiotropy)	62,892 European ancestry T2D cases, 79,194 European ancestry PrCa cases, 659,536 European ancestry controls	NA	6q25.2	RGS17	rs4385321-A	0.35	1E-15				Illumina [5041948] (imputed)	N
1755	chr6	153395593	153395594	rs9371670	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	6q25.2		rs9371670-G	NR	6E-13		0.0151	[0.011-0.019] unit increase	Affymetrix, Illumina [20535873] (imputed)	N
1755	chr6	153396874	153396875	rs9397585	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	6q25.2	RGS17	rs9397585-C	0.646	5E-9	(Japanese)	0.021	[0.013-0.029] unit increase	Illumina [6108953] (imputed)	N
1755	chr6	153398477	153398477	rs11431780	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	6q25.2		rs11431780-TG	NR	3E-11		0.0166	[0.012-0.021] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
1755	chr6	153405198	153405199	rs7453812	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6q25.2	NR	rs7453812-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
1755	chr6	153407845	153407846	rs676199	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6q25.2		rs676199-?	NR	4E-10				NR [~ 8900000] (imputed)	N
1755	chr6	153427264	153427265	rs9479509	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	6q25.2	NR	rs9479509-A	NR	4E-13		0.02	[0.015-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
1755	chr6	153427264	153427265	rs9479509	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	6q25.2	NR	rs9479509-A	NR	5E-12		0.0199	[0.014-0.026] unit increase	Affymetrix [9000000] (imputed)	N
1755	chr6	153427264	153427265	rs9479509	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6q25.2	NR	rs9479509-?	NR	8E-11				Affymetrix [~ 8270000] (imputed)	N
1755	chr6	153427264	153427265	rs9479509	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	6q25.2	NA	rs9479509-A	0.2939	3E-13		0.0136	[0.0099-0.0173] unit increase	NR [~ 27400000] (imputed)	N
1755	chr6	153427264	153427265	rs9479509	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	NA	6q25.2	RGS17	rs9479509-G	0.7046	1E-9		0.1152	[0.078-0.152] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1755	chr6	153428101	153428102	rs9383649	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	6q25.2	NR	rs9383649-G	0.4192	1E-12		0.0329	[0.024-0.042] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1755	chr6	153431124	153431125	rs12055786	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	200,622 European ancestry individuals	NA	6q25.2	RGS17	rs12055786-T	0.4242	1E-11		0.012	[0.0087-0.0153] unit increase	Affymetrix, Illumina [34064007] (imputed)	N
1755	chr6	153431124	153431125	rs12055786	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	High density lipoprotein cholesterol levels	up to 237,050 European ancestry individuals, up to 16,935 African ancestry individuals, up to 30,468 South Asian ancestry individuals, up to 8,287 East Asian ancestry individuals, 5,084 Hispanic individuals	up to 286,268 European and unknown ancestry individuals	6q25.2	RGS17	rs12055786-T	NR	7E-14		0.015069513	[0.011-0.019] unit decrease	Illumina [242289]	N
1755	chr6	153431124	153431125	rs12055786	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	High density lipoprotein cholesterol levels	up to 237,050 European ancestry individuals	NA	6q25.2	NR	rs12055786-T	0.42	1E-9		0.02	unit decrease	Illumina [242289]	N
1755	chr6	153431375	153431376	rs1281962	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting glucose	73,089 European ancestry women	NA	6q25.2	RGS17	rs1281962-C	0.538	3E-7		0.0139	[0.0086-0.0192] unit increase	Affymetrix, Illumina [8700000] (imputed)	N
1755	chr6	153431375	153431376	rs1281962	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting glucose	151,188 European ancestry individuals	NA	6q25.2	RGS17	rs1281962-C	0.538	4E-8		0.0106	[0.0069-0.0143] unit increase	Affymetrix, Illumina [8700000] (imputed)	N
1755	chr6	153431375	153431376	rs1281962	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	6q25.2	SYNE1, MYCT1, VIP, FBXO5, MTRF1L	rs1281962-C	0.540178017562686	1E-9		0.016375544	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1755	chr6	153440769	153440770	rs7758002	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	6q25.2	NR	rs7758002-G	0.5238	5E-16		0.0317	[0.024-0.039] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1755	chr6	153441078	153441079	rs1933488	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	6q25.2	NR	rs1933488-A	0.58	4E-21		1.08	[1.06-1.10]	Illumina [20370935] (imputed)	N
1755	chr6	153441078	153441079	rs1933488	23535732	Eeles RA	2013-04-01	Nat Genet	Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array.	Prostate cancer	11,085 European ancestry cases, 11,463 European ancestry controls	19,662 European ancestry cases, 19,715 European ancestry controls	6q25.2	RGS17, FBXO5, MTRF1L	rs1933488-A	0.59	4E-18		1.12	[1.09-1.15]	Illumina [~ 2600000] (imputed)	N
1755	chr6	153443158	153443159	rs6557273	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	6q25.2		rs6557273-G	NR	6E-9		0.0126	[0.0083-0.0169] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
1755	chr6	153444087	153444088	rs570711	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6q25.2	RGS17	rs570711-C	NR	5E-9		0.0237531	[0.016-0.032] unit decrease	Affymetrix [319769] (imputed)	N
1755	chr6	153444087	153444088	rs570711	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6q25.2	RGS17	rs570711-C	NR	6E-9		0.0236459	[0.016-0.032] unit decrease	Affymetrix [319769] (imputed)	N
1755	chr6	153445964	153445965	rs9371676	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	6q25.2	NR	rs9371676-A	NR	1E-9		0.016	[0.011-0.021] unit increase	Affymetrix [9000000] (imputed)	N
1755	chr6	153447515	153447516	rs13215045	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	6q25.2	NR	rs13215045-C	NR	1E-24		1.074	[1.06-1.09]	Affymetrix, Illumina [29235255] (imputed)	N
1755	chr6	153448306	153448307	rs6932847	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Prostate cancer	11,599 European ancestry cases, 199,628 European ancestry controls, 5,672 East Asian ancestry cases, 84,660 East Asian ancestry controls	NA	6q25.2		rs6932847-A	NR	5E-12		0.0865	[0.062-0.111] unit decrease	Affymetrix, Illumina [25775424] (imputed)	N
1755	chr6	153450488	153450489	rs611499	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	6q25.2	RGS17	rs611499-T	0.522	2E-8		0.0067	[0.0043-0.0091] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
1755	chr6	153451064	153451065	rs112289739	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	6q25.2	RGS17	rs112289739-T	0.0081	3E-15		1.1503		Affymetrix [11880941] (imputed)	N
1755	chr6	153455993	153455994	rs672341	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	6q25.2	NA	rs672341-A	0.4126	8E-10		0.0122	[0.0083-0.0161] unit decrease	NR [~ 27400000] (imputed)	N
1755	chr6	153457679	153457680	rs1281958	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	6q25.2		rs1281958-A	NR	5E-12		0.0154	[0.011-0.02] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
1755	chr6	153459443	153459444	rs1281955	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6q25.2	NR	rs1281955-T	NR	2E-8		0.02	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1755	chr6	153459443	153459444	rs1281955	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6q25.2	NR	rs1281955-T	0.602	5E-7	(EA)	0.019	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1755	chr6	153459903	153459904	rs74419430	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	6q25.2	RGS17	rs74419430-T	0.577629	4E-17		0.0162764	[0.012-0.02] unit decrease	Affymetrix [NR] (imputed)	N
1755	chr6	153459903	153459904	rs74419430	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	6q25.2	RGS17	rs74419430-T	0.577664	1E-10		0.0128452	[0.0089-0.0168] unit decrease	Affymetrix [NR] (imputed)	N
1755	chr6	153468383	153468384	rs75260165	33602968	Skuladottir AT	2021-02-18	Sci Rep	A meta-analysis uncovers the first sequence variant conferring risk of Bell's palsy.	Bell's palsy	4,714 European ancestry cases, 1,011,520 European ancestry controls	NA	6q25.2	intergenic	rs75260165-C	0.0333	9E-6		0.74931	NR	Affymetrix, Illumina [30341632] (imputed)	N
1755	chr6	153468732	153468733	rs1281949	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6q25.2	RNA5SP224	rs1281949-G	NR	7E-10		0.0175794	[0.012-0.023] unit decrease	Affymetrix [319769] (imputed)	N
1755	chr6	153468732	153468733	rs1281949	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6q25.2	RNA5SP224	rs1281949-G	NR	2E-9		0.0172049	[0.012-0.023] unit decrease	Affymetrix [319769] (imputed)	N
1755	chr6	153473231	153473232	rs1281978	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	6q25.2	RGS17	rs1281978-C	0.469017	1E-8		0.0114197	[0.0075-0.0153] unit increase	Affymetrix [NR] (imputed)	N
1756	chr6	153543871	153543872	rs1890312	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	6q25.2	NR	rs1890312-?	NR	1E-6				Affymetrix [NR]	N
1756	chr6	153549798	153549799	rs144384547	33501934	Suzuki K	2021-01-27	Inflamm Bowel Dis	Genetic Background of Mesalamine-induced Fever and Diarrhea in Japanese Patients with Inflammatory Bowel Disease.	Fever and diarrhea in mesalamine-treated irritable bowel disease	49 Japanese ancestry cases, 1,474 Japanese ancestry controls	14 Japanese ancestry cases, 774 Japanese ancestry controls	6q25.2	intergenic	rs144384547-G	0.0071	7E-9		11.2	[10.4-12.0]	NR [7215020] (imputed)	N
1756	chr6	153550146	153550147	rs9479561	30098192	Shaaban S	2018-08-01	Invest Ophthalmol Vis Sci	Genome-Wide Association Study Identifies a Susceptibility Locus for Comitant Esotropia and Suggests a Parent-of-Origin Effect.	Amblyopia	386 European ancestry cases, 1,700 European ancestry controls	45 European ancestry cases, 180 European ancestry controls	6q25.2	NR	rs9479561-G	NR	7E-6		1.83	NR	Illumina [6470615] (imputed)	N
1756	chr6	153574102	153574103	rs3877930	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	6q25.2		rs3877930-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1756	chr6	153582989	153582990	rs3870369	31092817	Lees JA	2019-05-15	Nat Commun	Joint sequencing of human and pathogen genomes reveals the genetics of pneumococcal meningitis.	Pneumococcal meningitis	732 European and unknown ancestry cases, 4,836 European and unknown ancestry controls	NA	6q25.2	RGS17	rs3870369-T	NR	4E-7				Illumina [6800000] (imputed)	N
1756	chr6	153582989	153582990	rs3870369	31092817	Lees JA	2019-05-15	Nat Commun	Joint sequencing of human and pathogen genomes reveals the genetics of pneumococcal meningitis.	Bacterial meningitis	1,149 European and unknown ancestry cases, 4,836 European and unknown ancestry controls	NA	6q25.2	RGS17	rs3870369-T	NR	7E-8		1.27	[NR]	Illumina [6800000] (imputed)	N
1756	chr6	153612269	153612270	rs17083871	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	6q25.2	NR	rs17083871-?	NR	4E-6		10667.331	NR unit decrease	Illumina [2379855]	N
1757	chr6	153620555	153620555	rs10649162	26365420	Mbarek H	2015-09-14	Am J Med Genet B Neuropsychiatr Genet	The genetics of alcohol dependence: Twin and SNP-based heritability, and genome-wide association study based on AUDIT scores.	Alcohol dependence	1,374 European ancestry cases and 6,468 European ancestry controls from 7,694 twin pairs	NA	6q25.2	RGS17	rs10649162-?	NR	5E-6		1.2658228	[1.17-1.36]	Affymetrix, Illumina, Perlegen [6464174] (imputed)	N
1757	chr6	153644069	153644070	rs13195251	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	6q25.2	AL590867.1	rs13195251-T	0.291755	2E-8		0.0124022	[0.0081-0.0167] unit increase	Affymetrix [NR] (imputed)	N
1757	chr6	153719984	153719985	rs12198650	26242244	Ma Y	2015-08-05	Sci Rep	Association of chromosome 5q21.3 polymorphisms with the exploratory eye movement dysfunction in schizophrenia.	Exploratory eye movement dysfunction in schizophrenia (number of eye fixations)	128 Han Chinese ancestry cases	NA	6q25.2	NR	rs12198650-?	NR	7E-6		16.64	[9.68-23.6] unit decrease	Illumina [498648]	N
1758	chr6	153798687	153798688	rs11758777	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6q25.2		rs11758777-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1758	chr6	153804852	153804853	rs17084143	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	6q25.2	NR	rs17084143-?	NR	4E-14				Affymetrix [NR]	N
1759	chr6	153917945	153917946	rs9322428	26377243	Li J	2015-09-17	J Hum Genet	Genome- and exome-wide association study of serum lipoprotein (a) in the Jackson Heart Study.	Lipoprotein (a) levels	2,895 African American individuals	NA	6q25.2	RGS17, OPRM1	rs9322428-A	0.85	1E-9		0.19	[0.13-0.25] unit increase	Affymetrix [up to 38000000] (imputed)	N
1759	chr6	154004970	154004971	rs2186141	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine - clinic-based	5,175 European ancestry clinic-based cases, 13,972 European ancestry clinic-based controls	NA	6q25.2	intergenic	rs2186141-?	0.56	4E-6		1.12	[1.06-1.18]	Affymetrix, Illumina [~ 2300000] (imputed)	N
1760	chr6	154025138	154025139	rs73568641	28115739	Smith AH	2017-01-24	Mol Psychiatry	Genome-wide association study of therapeutic opioid dosing identifies a novel locus upstream of OPRM1.	Methadone dose in opioid dependence	1,027 European American cases, 383 African American cases	NA	6q25.2	OPRM1	rs73568641-C	0.09915221932114882	3E-8	(AA)	0.6808	[0.44-0.92] unit increase	Illumina [at least 988306] (imputed)	N
1760	chr6	154077192	154077193	rs1937579	23870195	Wojczynski MK	2013-07-19	BMC Med Genet	Genetics of coronary artery calcification among African Americans, a meta-analysis.	Coronary artery calcification	5,823 African American individuals	9,992 European ancestry individuals	6q25.2	C6orf10	rs1937579-T	0.85	3E-6	(AA)	0.19	[0.11-0.27] unit increase	Affymetrix, Illumina [up to 2727966] (imputed)	N
1761	chr6	154234866	154234867	rs6900489	23934736	Yu B	2013-08-11	Genet Epidemiol	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels  (X-11787)	1,260 African American individuals	NA	6q25.2	LOC729635	rs6900489-C		5E-6		0.06	[0.03-0.08] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1761	chr6	154246561	154246562	rs62434394	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 276)	19,670 European ancestry individuals	NA	6q25.2		rs62434394-?	NR	2E-8				NR [9705931] (imputed)	N
1762	chr6	154304627	154304628	rs796915	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	6q25.2	OPRM1	rs796915-C	0.305175	2E-17		0.0129135	[0.0099-0.0159] unit decrease	Affymetrix [12370749]	N
1762	chr6	154309807	154309808	rs10499276	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	6q25.2	NA	rs10499276-T	0.1128	2E-13		0.018	[0.013-0.023] unit increase	NR [~ 27400000] (imputed)	N
1762	chr6	154333182	154333183	rs9478496	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		6q25.2	OPRM1	rs9478496-T	0.835791	4E-10		0.0116188	[0.008-0.0153] unit decrease	Affymetrix [12370749]	N
1762	chr6	154333182	154333183	rs9478496	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6q25.2	NR	rs9478496-?	NR	3E-12				Affymetrix [~ 8270000] (imputed)	N
1762	chr6	154333182	154333183	rs9478496	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	6q25.2		rs9478496-?	NR	1E-11				NR [~ 8900000] (imputed)	N
1762	chr6	154336891	154336892	rs9688977	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	6q25.2		rs9688977-C	NR	6E-13		0.0196	[0.014-0.025] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1762	chr6	154360796	154360797	rs1799971	32492095	Zhou H	2020-06-03	JAMA Psychiatry	Association of OPRM1 Functional Coding Variant With Opioid Use Disorder: A Genome-Wide Association Study.	Opioid use disorder	10,544 European ancestry cases, 72,163 European ancestry controls, 5,212 African American cases, 26,876 African American controls	748 European ancestry cases, 361,107 European ancestry controls	6q25.2	OPRM1	rs1799971-G		8E-10		0.07	[0.048-0.092] unit decrease	Affymetrix [9420000] (imputed)	N
1762	chr6	154382366	154382367	rs7773995	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	6q25.2	NR	rs7773995-C	0.831394	1E-9		0.0235835	[0.016-0.032] unit increase	Affymetrix [16577313] (imputed)	N
1763	chr6	154409815	154409816	rs17181171	29855537	Hirata T	2018-05-31	Sci Rep	Japanese GWAS identifies variants for bust-size, dysmenorrhea, and menstrual fever that are eQTLs for relevant protein-coding or long non-coding RNAs.	Menstruation quality of life impact (fever)	112 Japanese ancestry female cases, 5,622 Japanese ancestry female controls	157 Japanese ancestry female cases, 5,457 Japanese ancestry female controls	6q25.2	OPRM1	rs17181171-A	0.028315429	2E-8		1.0238161	[0.67-1.38] unit increase	Affymetrix [536506]	N
1763	chr6	154414445	154414446	rs540825	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	6q25.2		rs540825-A	0.2529	2E-8		0.1322783	[0.082-0.183] mmHg decrease	Affymetrix, Illumina [242865] (imputed)	N
1763	chr6	154414445	154414446	rs540825	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	6q25.2		rs540825-A	0.253	1E-10		0.09660084	[0.065-0.128] mmHg decrease	Affymetrix, Illumina [242866] (imputed)	N
1763	chr6	154414562	154414563	rs675026	21347282	Lettre G	2011-02-10	PLoS Genet	Genome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project.	Hypertension	4,069 African American cases, 3,848 African American controls	1,372 African American cases, 1,482 African American controls	6q25.2	OPRM1	rs675026-?	0.72	5E-6		1.2033695	[1.11-1.3]	Affymetrix [~ 2740000] (imputed)	N
1763	chr6	154418758	154418759	rs598682	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	6q25.2	OPRM1	rs598682-A	0.2505	3E-11		0.1153	[0.081-0.149] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1763	chr6	154419538	154419539	rs584709	32701715	Zhang Y	2020-07-21	J Bone Joint Surg Am	PPARGC1B Is Associated with Nontraumatic Osteonecrosis of the Femoral Head: A Genomewide Association Study on a Chart-Reviewed Cohort.	Nontraumatic osteonecrosis of the femoral head	118 European ancestry cases, 56,811 European ancestry controls	NA	6q25.2	OPRM1	rs584709-C	0.341	2E-6		1.86	[1.44-2.40]	Illumina [3905175] (imputed)	N
1763	chr6	154439864	154439865	rs11575858	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure in major depressive disorder	13,393 European ancestry cases, 9,487 European ancestry controls	NA	6q25.2	NR	rs11575858-T	0.0189106	2E-6		1.135	[1.08-1.19]	Affymetrix [7791636] (imputed)	N
1763	chr6	154450988	154450989	rs502627	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	6q25.2	OPRM1	rs502627-A	0.896658	4E-8		0.0180224	[0.012-0.024] unit decrease	Affymetrix [NR] (imputed)	N
1763	chr6	154452536	154452537	rs538174	25461247	Lehmann DS	2015-02-01	Pharmacogenet Genomics	Genome-wide association study of virologic response with efavirenz-containing or abacavir-containing regimens in AIDS clinical trials group protocols.	Response to efavirenz-containing treatment in HIV 1 infection (virologic failure)	Up to 737 European ancestry individuals, Up to 545 Black individuals, Up to 314 Hispanic individuals	NA	6q25.2	NR	rs538174-C	NR	5E-6	(phenotype 1)	2.44	[NR]	Illumina [> 8000000] (imputed)	N
1763	chr6	154452536	154452537	rs538174	25461247	Lehmann DS	2015-02-01	Pharmacogenet Genomics	Genome-wide association study of virologic response with efavirenz-containing or abacavir-containing regimens in AIDS clinical trials group protocols.	Response to abacavir-containing treatment in HIV-1 infection (virologic failure)	Up 346 European ancestry individuals, Up to 265 Black individuals, Up to 175 Hispanic individuals	NA	6q25.2	NR	rs538174-C	NR	5E-6	(phenotype 3)	2.44	[NR]	Illumina [> 8000000] (imputed)	N
1763	chr6	154461821	154461822	rs13193545	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	6q25.2	NR	rs13193545-C	NR	2E-10		0.019	[0.013-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
1763	chr6	154471224	154471225	rs4869818	28165464	Law PJ	2017-02-06	Nat Commun	Genome-wide association analysis implicates dysregulation of immunity genes in chronic lymphocytic leukaemia.	Chronic lymphocytic leukemia	4,478 European ancestry cases and 13,213 European ancestry controls.	1,722 European ancestry cases and 4,385 European ancestry controls.	6q25.2	IPCEF1	rs4869818-G	NR	4E-8		1.15	[1.09-1.21]	Affymetrix, Illumina [> 10000000] (imputed)	N
1763	chr6	154477912	154477913	rs17277929	27611488	Almoguera B	2016-09-09	Am J Respir Crit Care Med	Identification of Four Novel Loci in Asthma in European American and African American Populations.	Asthma (childhood onset)	1,181 African American allergic asthma child cases, 498 African American non-allergic asthma child cases, 2,993 African American child controls, 998 European American allergic asthma child cases, 182 European American non-allergic asthma child cases, 4,097 European American child controls.	NA	6q25.2	IPCEF1	rs17277929-?	NR	8E-6		0.239	[0.14-0.34] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1763	chr6	154478439	154478440	rs2236256	24292274	Speedy HE	2013-12-01	Nat Genet	A genome-wide association study identifies multiple susceptibility loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	1,739 European ancestry cases, 5,199 European ancestry controls	1,144 European ancestry cases, 3,151 European ancestry controls	6q25.2	IPCEF1	rs2236256-C		2E-10		1.23	[1.15-1.30]	Illumina [450000] (imputed)	N
1764	chr6	154554248	154554249	rs9384193	28060188	Hamet P	2017-01-16	J Hypertens	PROX1 gene CC genotype as a major determinant of early onset of type 2 diabetes in slavic study participants from Action in Diabetes and Vascular Disease: Preterax and Diamicron MR Controlled Evaluation study.	Type 2 diabetes (age of onset)	2,307 Celtic ancestry individuals, 1,102 Slavic ancestry individuals	NA	6q25.2	OPRM1, CNKSR3	rs9384193-?	NR	9E-6	(Slavic)			Affymetrix [5045527] (imputed)	N
1764	chr6	154570650	154570651	rs9322454	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6q25.2	IPCEF1	rs9322454-A	0.659	2E-8		1.09	[1.06-1.12]	Illumina [11270530] (imputed)	N
1764	chr6	154601953	154601954	rs35277959	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	6q25.2	NR	rs35277959-?	NR	1E-9				Illumina [7760689] (imputed)	N
1764	chr6	154627822	154627823	rs7770794	34103634	Valette K	2021-06-08	Commun Biol	Prioritization of candidate causal genes for asthma in susceptibility loci derived from UK Biobank.	Asthma	56,167 White-British ancestry cases, 352,255 White-British ancestry controls	NA	6q25.2	IPCEF1	rs7770794-A	0.285802189795812	9E-9		0.041555144	[0.027-0.056] unit increase	Affymetrix [35186738] (imputed)	N
1764	chr6	154627822	154627823	rs7770794	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6q25.2	NR	rs7770794-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
1764	chr6	154633542	154633543	rs118124932	31235810	Fung K	2019-06-24	Sci Rep	Genome-wide association study identifies loci for arterial stiffness index in 127,121 UK Biobank participants.	Arterial stiffness index	127,121 European ancestry individuals	NA	6q25.2	IPCEF1	rs118124932-C	0.964	7E-6		0.049	[0.027-0.071] unit increase	Affymetrix [~ 10446505] (imputed)	N
1764	chr6	154633858	154633859	rs7764996	32579418	Maukonen M	2020-06-24	J Biol Rhythms	Genetic Associations of Chronotype in the Finnish General Population.	Chronotype (sMEQ score)	7,436 Finnish ancestry individuals	NA	6q25.2	IPCEF1	rs7764996-G	NR	8E-7		0.348817	[0.21-0.49] unit decrease	Illumina [5842835] (imputed)	N
1764	chr6	154662646	154662647	rs9397706	29679657	Ferreira MA	2018-04-18	J Allergy Clin Immunol	Eleven loci with new reproducible genetic associations with allergic disease risk.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	6q25.2	IPCEF1	rs9397706-A	0.5272	5E-7	(conditional)	0.0257086	NR unit increase	NR [NR]	N
1765	chr6	154716714	154716715	rs55800521	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Amygdala volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	6q25.2	NR	rs55800521-?		8E-6				Illumina [4322238] (imputed)	N
1765	chr6	154726987	154726988	rs2275336	22451204	Pankratz N	2012-03-01	Ann Neurol	Meta-analysis of Parkinson's disease: identification of a novel locus, RIT2.	Parkinson's disease	4,238 European ancestry cases, 4,239 European ancestry controls	3,738 European ancestry cases, 2,111 European ancestry controls	6q25.2	CNKSR3	rs2275336-?	NR	9E-7		1.36	[NR]	Illumina [2500000] (imputed)	N
1766	chr6	154820851	154820852	rs7771691	32701715	Zhang Y	2020-07-21	J Bone Joint Surg Am	PPARGC1B Is Associated with Nontraumatic Osteonecrosis of the Femoral Head: A Genomewide Association Study on a Chart-Reviewed Cohort.	Nontraumatic osteonecrosis of the femoral head	118 European ancestry cases, 56,811 European ancestry controls	NA	6q25.2	CNKSR3	rs7771691-C	0.121	9E-6		2.05	[1.50-2.81]	Illumina [3905175] (imputed)	N
1766	chr6	154858364	154858365	rs62432759	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	6q25.2	CNKSR3	rs62432759-A	0.7783	4E-10		0.0025	[0.0017-0.0033] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
1766	chr6	154872079	154872080	rs6927301	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	6q25.2		rs6927301-G	NR	3E-10		0.013	[0.0089-0.0171] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
1766	chr6	154872079	154872080	rs6927301	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	6q25.2	CNKSR3	rs6927301-T	0.68539	1E-15		0.00440776	[0.0033-0.0055] unit increase	Affymetrix [13995440] (imputed)	N
1766	chr6	154876503	154876504	rs17085526	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	6q25.2	NR	rs17085526-A	NR	2E-11		0.0173	[0.012-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
1766	chr6	154896234	154896235	rs17539620	26377243	Li J	2015-09-17	J Hum Genet	Genome- and exome-wide association study of serum lipoprotein (a) in the Jackson Heart Study.	Lipoprotein (a) levels	2,895 African American individuals	NA	6q25.2	CNKSR3, SCAF8, TIAM2	rs17539620-T	0.05	4E-10		0.33	[0.23-0.43] unit decrease	Affymetrix [up to 38000000] (imputed)	N
1767	chr6	154947407	154947408	rs955333	26305897	Iyengar SK	2015-08-25	PLoS Genet	Genome-Wide Association and Trans-ethnic Meta-Analysis for Advanced Diabetic Kidney Disease: Family Investigation of Nephropathy and Diabetes (FIND).	Diabetic kidney disease	1,564 African American cases, 369  African American diabetic controls, 1,288 African American non-diabetic controls, 538 American Indian ancestry cases, 319 American Indian ancestry diabetic controls, 342 European ancestry cases, 404 European ancestry diabetic controls, 779 Mexican ancestry cases, 594 Mexican ancestry diabetic controls	950 African American cases, 50 African American diabetic controls, 1,887 African American non-diabetic controls, 471 American Indian ancestry cases, 340 American Indian ancestry diabetic controls, 486 American Indian ancestry non-diabetic controls, 582 European ancestry ancestry cases, 205 European ancestry diabetic controls, 2,568 European ancestry non-diabetic controls	6q25.2	intergenic	rs955333-?	NR	1E-8	(additive )	1.369863		Affymetrix [NR]	N
1767	chr6	154954419	154954420	rs12523822	26305897	Iyengar SK	2015-08-25	PLoS Genet	Genome-Wide Association and Trans-ethnic Meta-Analysis for Advanced Diabetic Kidney Disease: Family Investigation of Nephropathy and Diabetes (FIND).	Diabetic kidney disease	1,564 African American cases, 369  African American diabetic controls, 1,288 African American non-diabetic controls, 538 American Indian ancestry cases, 319 American Indian ancestry diabetic controls, 342 European ancestry cases, 404 European ancestry diabetic controls, 779 Mexican ancestry cases, 594 Mexican ancestry diabetic controls	950 African American cases, 50 African American diabetic controls, 1,887 African American non-diabetic controls, 471 American Indian ancestry cases, 340 American Indian ancestry diabetic controls, 486 American Indian ancestry non-diabetic controls, 582 European ancestry ancestry cases, 205 European ancestry diabetic controls, 2,568 European ancestry non-diabetic controls	6q25.2	SCAF8, CNKSR3	rs12523822-?	0.74	6E-9	(American Indian, dominant )	1.754386		Affymetrix [NR]	N
1767	chr6	154983791	154983792	rs1554447	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	6q25.2		rs1554447-T	NR	2E-9		0.0155	[0.01-0.021] unit decrease	Affymetrix, Illumina [20538307] (imputed)	N
1767	chr6	154986663	154986664	rs9397738	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	6q25.2		rs9397738-A	NR	7E-15		0.017	[0.013-0.021] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
1767	chr6	154986663	154986664	rs9397738	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	6q25.2	NR	rs9397738-A	NR	3E-9		0.0202	[0.014-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
1767	chr6	154986663	154986664	rs9397738	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	6q25.2	NR	rs9397738-A	NR	2E-11		0.0229	[0.016-0.03] unit increase	Affymetrix [9000000] (imputed)	N
1767	chr6	154986663	154986664	rs9397738	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	6q25.2	NR	rs9397738-A	NR	4E-10		0.0214	[0.015-0.028] unit decrease	Affymetrix [9000000] (imputed)	N
1767	chr6	154986663	154986664	rs9397738	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	6q25.2	NR	rs9397738-A	NR	8E-12		0.0233	[0.017-0.03] unit decrease	Affymetrix [9000000] (imputed)	N
1767	chr6	154986663	154986664	rs9397738	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	6q25.2	SCAF8	rs9397738-A	0.838	5E-15		0.0027	[0.0019-0.0035] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
1767	chr6	154986663	154986664	rs9397738	22797727	Okada Y	2012-07-15	Nat Genet	Meta-analysis identifies multiple loci associated with kidney function-related traits in east Asian populations.	Renal function-related traits (eGRFcrea)	42,451 East Asian, South Asian, and South East Asian ancestry individuals	19,636 East Asian ancestry individuals	6q25.2	CNKSR3, RBM16	rs9397738-G	0.22	5E-6		0.0039	[0.0021-0.0057] ml/min/1.73m2 decrease	Affymetrix, Illumina [2353587] (imputed)	N
1767	chr6	155020518	155020519	rs59779702	33713768	Akenroye AT	2021-03-10	J Allergy Clin Immunol	Genome-wide Association study of Asthma, Total IgE, and Lung function in a Cohort of Peruvian Children.	Serum IgE levels	727 Peruvian individuals	NA	6q25.2		rs59779702-?	NR	5E-6		0.339	unit decrease	Illumina [NR] (imputed)	N
1768	chr6	155067309	155067310	rs73010912	31006051	Kharazmi M	2019-04-20	Calcif Tissue Int	A Genome-Wide Association Study of Bisphosphonate-Associated Atypical Femoral Fracture.	Bisphosphonate-associated atypical femoral fracture	50 European ancestry cases, 1 Chilean ancestry case, 4,891 European ancestry controls	NA	6q25.2	SCAF8	rs73010912-A	0.015	2E-6		6.174	[2.903-13.13]	Illumina [7585874] (imputed)	N
1768	chr6	155074504	155074505	rs4599658	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	6q25.2	SCAF8	rs4599658-G	0.47	2E-9				NR [> 9500000] (imputed)	N
1768	chr6	155121258	155121259	rs7740797	26621817	Cheng TH	2015-12-01	Sci Rep	Meta-analysis of genome-wide association studies identifies common susceptibility polymorphisms for colorectal and endometrial cancer near SH2B3 and TSHZ1.	Colorectal or endometrial cancer	5,725 European ancestry colorectal carcinoma cases, 2,212 European ancestry endometrial carcinoma cases, 13,396 European ancestry controls	NA	6q25.2	SCAF8	rs7740797-G	0.513	2E-7	(same direction)	1.12	[1.07-1.16]	Illumina [up to 6000000] (imputed)	N
1768	chr6	155129279	155129280	rs140506252	33568662	Dashti HS	2021-02-10	Nat Commun	Genetic determinants of daytime napping and effects on cardiometabolic health.	Daytime nap	452,633 European ancestry individuals	541,333 European ancestry individuals	6q25.2	SCAF8	rs140506252-A		6E-12		0.0216	[0.016-0.028] unit increase	Affymetrix [13304133] (imputed)	N
1768	chr6	155134173	155134175	rs1401084970	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	6q25.2	SCAF8	rs1401084970-C	0.467182	3E-9		1.0372341	[1.02481020872603-1.049808659194]	NR [9572556] (imputed)	N
1768	chr6	155162162	155162163	rs12201149	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	6q25.2	TIAM2	rs12201149-T	0.4147	9E-9				Affymetrix [15688218] (imputed)	N
1769	chr6	155246717	155246718	rs4482989	30843173	Popovic M	2019-03-07	J Endocrinol Invest	Genome-wide meta-analysis identifies novel loci associated with free triiodothyronine and thyroid-stimulating hormone.	Triiodothyronine levels and thyroxine levels	Up to 1,729 Croatian, Korculan (founder/genetic isolate) and Vis (founder/genetic isolate) individuals	NA	6q25.2	TIAM2	rs4482989-T	0.3	4E-6		0.0219	[0.012-0.031] unit increase	Illumina [7411206] (imputed)	N
1769	chr6	155277900	155277901	rs9479989	33407418	Jonsson A	2021-01-06	BMC Med Genomics	Genome-wide association study of circulating levels of glucagon during an oral glucose tolerance test.	Glucagon levels in response to oral glucose tolerance test (fasting)	553 European ancestry individuals, 1,346 individuals	NA	6q25.2	NR	rs9479989-A	0.3588	9E-6		0.1839	[0.1-0.26] unit decrease	Illumina [NR] (imputed)	N
1769	chr6	155284316	155284317	rs2273898	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	6q25.2		rs2273898-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1770	chr6	155321346	155321347	rs2475863	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6q25.2	NR	rs2475863-C	0.01045	2E-8	(DIABLO)	0.01142	NR unit increase	Illumina [1671387] (imputed)	N
1770	chr6	155329402	155329403	rs12196629	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6q25.2		rs12196629-?	NR	6E-26		0.0288395	[0.023-0.034] unit decrease	Affymetrix [20259828] (imputed)	N
1770	chr6	155332117	155332118	rs13201764	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	6q25.2	TIAM2	rs13201764-T	0.854574	1E-21		0.0249816	[0.02-0.03] unit decrease	NR [13737936] (imputed)	N
1770	chr6	155332314	155332315	rs13219291	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	6q25.2		rs13219291-?	NR	2E-21				NR [~ 8900000] (imputed)	N
1770	chr6	155342596	155342597	rs9397763	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	6q25.2		rs9397763-C	0.13	4E-14		7.58	z score increase	Affymetrix [9061022] (imputed)	N
1770	chr6	155342596	155342597	rs9397763	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6q25.2		rs9397763-?	NR	6E-10		0.0222572	[0.015-0.029] unit decrease	Affymetrix [20259828] (imputed)	N
1770	chr6	155359776	155359777	rs60574493	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	6q25.2	TIAM2	rs60574493-G	0.86272	3E-13		0.0193588	[0.014-0.025] unit decrease	NR [13737936] (imputed)	N
1770	chr6	155436820	155436821	rs62427108	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	6q25.2	TIAM2	rs62427108-C	0.94477	1E-11		0.027357	[0.019-0.035] unit increase	NR [13737936] (imputed)	N
1770	chr6	155436820	155436821	rs62427108	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6q25.2		rs62427108-?	NR	3E-9		0.024906	[0.016-0.034] unit increase	Affymetrix [20259828] (imputed)	N
1771	chr6	155451721	155451722	rs11967850	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	6q25.2		rs11967850-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1771	chr6	155456126	155456127	rs140794572	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		TIAM2	rs140794572-?	NR	6E-9		1.85258	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1771	chr6	155464544	155464545	rs138845881	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6q25.2	NR	rs138845881-T	0.01045	1E-8	(EMILIN2)	0.1163	NR unit increase	Illumina [1671387] (imputed)	N
1771	chr6	155484357	155484358	rs73795325	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	6q25.2	TFB1M	rs73795325-T	0.0242011987168947	2E-6	(F_Rhodospirillaceae_RNT)	0.566462	[0.33-0.8] unit increase	Illumina [7711310] (imputed)	N
1771	chr6	155494723	155494724	rs12525341	28560309	Lee E	2017-04-23	Alzheimers Dement (Amst)	Single-nucleotide polymorphisms are associated with cognitive decline at Alzheimer's disease conversion within mild cognitive impairment patients.	Accelerated cognitive decline after conversion of mild cognitive impairment to Alzheimer's disease (Alzhiemer's diagnosis trajectory interaction)	242 European ancestry individuals	NA	6q25.2	TIAM2	rs12525341-?		8E-6				Illumina [5908215] (imputed)	N
1771	chr6	155515330	155515331	rs114803532	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Systolic blood pressure (baseline)	5,304 African American individuals, 13,137 European ancestry individuals, 1,317 Hispanic individuals, 1,439 admixed individuals, 703 Chinese ancestry individuals	6,500 African American individuals, 2,451 European ancestry individuals, 2,869 Hispanic individuals	6q25.2	NR	rs114803532-T	0.9771	4E-7		4.3408	[2.66-6.02] mmHg decrease	Affymetrix, Illumina [NR] (imputed)	N
1771	chr6	155515330	155515331	rs114803532	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Systolic blood pressure (baseline)	5,304 African American individuals	6,500 African American individuals	6q25.2	NR	rs114803532-T	0.9771	4E-7		4.3408	[2.66-6.02] mmHg decrease	Affymetrix, Illumina [NR] (imputed)	N
1771	chr6	155543990	155543991	rs6939601	29538362	Jilling T	2018-03-14	Pediatr Res	Surgical necrotizing enterocolitis in extremely premature neonates is associated with genetic variations in an intergenic region of chromosome eight.	Surgical necrotising enterocolitis in extremely premature birth	20 African American cases, 6 Hispanic Caucasian cases, 4 European ancestry cases,  283 African American controls, 130 Hispanic Caucasian controls, 133 European ancestry controls,	NA	6q25.3	NR	rs6939601-?	NR	3E-6				Illumina [8270200] (imputed)	N
1771	chr6	155551004	155551005	rs6908258	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6q25.3		rs6908258-?	NR	9E-25				NR [~ 8900000] (imputed)	N
1771	chr6	155554706	155554707	rs3828729	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	6q25.3	TIAM2	rs3828729-A	0.6906	5E-15		0.016	[0.012-0.02] unit increase	Affymetrix [18391927] (imputed)	N
1771	chr6	155557171	155557172	rs56075219	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	6q25.3		rs56075219-?	NR	4E-11				NR [~ 8900000] (imputed)	N
1771	chr6	155561795	155561796	rs11751128	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6q25.3	NR	rs11751128-?	NR	4E-6		4.621	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1772	chr6	155590120	155590121	rs34268254	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	6q25.3		rs34268254-T	NR	2E-18		0.015	[0.012-0.018] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1772	chr6	155592185	155592186	rs145047551	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-to-hip ratio adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,049 whole genome sequenced individuals, 29,518 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,001 Mylopotamos (founder/genetic isolate) individuals, 867 Pomak (founder/genetic isolate) individuals	206,045 European ancestry individuals	6q25.3	CLDN20, TFB1M	rs145047551-A	0.0031	4E-6		0.8385	[0.48-1.19] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1772	chr6	155592185	155592186	rs145047551	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-hip ratio	1,254 whole genome sequenced European ancestry individuals, 3,071 whole genome sequenced individuals, 29,723 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,053 Mylopotamos (founder/genetic isolate) individuals, 879 Pomak (founder/genetic isolate) individuals	206,053 European ancestry individuals	6q25.3	CLDN20, TFB1M	rs145047551-A	0.0028	3E-6		0.845	[0.49-1.2] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1772	chr6	155644977	155644978	rs9371883	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	6q25.3	Intergenic	rs9371883-C	0.6465	2E-9	(MTAG)	0.0113	[0.0076-0.015] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1772	chr6	155644977	155644978	rs9371883	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	6q25.3	Intergenic	rs9371883-C	0.6461	1E-11	(MTAG)	0.0116	[0.0083-0.0149] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1772	chr6	155644977	155644978	rs9371883	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6q25.3		rs9371883-C	0.643	3E-9		0.0087	[0.0058-0.0116] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1772	chr6	155644977	155644978	rs9371883	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6q25.3	Intergenic	rs9371883-C	0.643	2E-11	(MTAG)	0.0092	[0.0065-0.0119] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1772	chr6	155647390	155647391	rs9397806	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	6q25.3	Intergenic	rs9397806-A	0.3631	2E-10	(MTAG)	0.0152	[0.01-0.02] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1772	chr6	155648494	155648495	rs9478638	25387704	Malone SM	2014-12-01	Psychophysiology	Heritability and molecular-genetic basis of resting EEG activity: a genome-wide association study.	Electroencephalogram traits	2,383 European ancestry adolescents and 1,643 European ancestry adults from 1,613 families	NA	6q25.3	intergenic	rs9478638-?	NR	8E-6	(Beta power, Cz)	0.079	[0.044-0.114] unit increase	Illumina [527829]	N
1772	chr6	155648494	155648495	rs9478638	25387704	Malone SM	2014-12-01	Psychophysiology	Heritability and molecular-genetic basis of resting EEG activity: a genome-wide association study.	Electroencephalogram traits	2,383 European ancestry adolescents and 1,643 European ancestry adults from 1,613 families	NA	6q25.3	intergenic	rs9478638-?	NR	5E-7	(Alpha power, occipital)	0.158	[0.097-0.219] unit increase	Illumina [527829]	N
1772	chr6	155648578	155648579	rs9397240	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Life satisfaction	166,205 European ancestry individuals	NA	6q25.3	NR	rs9397240-C	0.8071	6E-6		0.0201	[0.011-0.029] unit decrease	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
1772	chr6	155712444	155712445	rs162990	25387704	Malone SM	2014-12-01	Psychophysiology	Heritability and molecular-genetic basis of resting EEG activity: a genome-wide association study.	Electroencephalogram traits	2,383 European ancestry adolescents and 1,643 European ancestry adults from 1,613 families	NA	6q25.3	intergenic	rs162990-?	NR	4E-6	(Beta power, Cz)	0.087	[0.05-0.124] unit increase	Illumina [527829]	N
1773	chr6	155813319	155813320	rs78349783	32887874	Saw J	2020-09-04	Nat Commun	Chromosome 1q21.2 and additional loci influence risk of spontaneous coronary artery dissection and myocardial infarction.	Spontaneous coronary artery dissection	up to 243 European ancestry cases, up to 23 East Asian ancestry cases, up to 4,816 European ancestry controls, up to 447 East Asian ancestry controls	up to 149 European ancestry cases, up to 14 East Asian ancestry cases, up to 2,935 European ancestry controls, up to 272 East Asian ancestry controls	6q25.3	NOX3	rs78349783-?	NA	1E-6		0.561	[0.34-0.79] unit increase	Illumina [6690240] (imputed)	N
1774	chr6	155847548	155847549	rs4869859	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Pork consumption	335,576 European ancestry individuals	NA	6q25.3	NOX3	rs4869859-?	NR	8E-10		0.00424498	[-0.00057-0.00906] unit decrease	Affymetrix [25921788] (imputed)	N
1774	chr6	155847548	155847549	rs4869859	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Oily fish consumption	335,576 European ancestry individuals	NA	6q25.3	NOX3	rs4869859-?	NR	8E-10		0.0150265	[0.01-0.02] unit decrease	Affymetrix [25921788] (imputed)	N
1774	chr6	155896131	155896132	rs9397822	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	6q25.3	RNU7-152P	rs9397822-A	0.1679	4E-8		0.014694304	[0.0095-0.0199] unit decrease	Affymetrix [up to 18485882] (imputed)	N
1774	chr6	155907482	155907483	rs62427469	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	6q25.3	RNU7-152P	rs62427469-G	0.1835	2E-8		0.014664213	[0.0095-0.0198] unit decrease	Affymetrix [up to 18485882] (imputed)	N
1774	chr6	155907482	155907483	rs62427469	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	6q25.3		rs62427469-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1774	chr6	155913490	155913491	rs62427471	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	6q25.3	Intergenic	rs62427471-A	0.1811	4E-11	(MTAG)	0.0142	[0.01-0.018] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1774	chr6	155913490	155913491	rs62427471	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	6q25.3	Intergenic	rs62427471-G	0.8189	4E-9		0.0173	[0.012-0.023] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1774	chr6	155913490	155913491	rs62427471	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6q25.3	Intergenic	rs62427471-A	0.1832	4E-11	(MTAG)	0.0112	[0.0079-0.0145] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1774	chr6	155913983	155913984	rs75405010	34838041	Naderi E	2021-11-27	J Transl Med	A two-stage genome-wide association study of radiation-induced acute toxicity in head and neck cancer.	radiation-induced toxicity (patient-rated acute xerostomia)	802 Dutch ancestry individuals	241 Dutch ancestry individuals	6q25.3		rs75405010-A	NR	8E-6		0.23966844	[0.13-0.34] increase	Illumina [6334277] (imputed)	N
1774	chr6	155913983	155913984	rs75405010	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	6q25.3	Intergenic	rs75405010-A	0.0753	4E-8	(MTAG)	0.024	[0.016-0.032] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1774	chr6	155914379	155914380	rs56139919	33607172	Nygaard M	2021-02-16	Mech Ageing Dev	Genome-wide association analysis of cognitive function in Danish long-lived individuals.	Cognitive function in longevity	490 Danish ancestry individuals	NA	6q25.3	LOC105378068	rs56139919-A	0.0207	9E-6		8.531	[NR] unit increase	Illumina [4827900] (imputed)	N
1774	chr6	155920031	155920032	rs6557435	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	6q25.3	Intergenic	rs6557435-T	0.2238	2E-8	(MTAG)	0.012	[0.0079-0.0161] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1774	chr6	155921474	155921475	rs9480167	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Tea consumption	336,898 European ancestry individuals	39,924 European ancestry individuals	6q25.3	NOX3	rs9480167-C	0.2153	2E-6		0.0088	[0.0053-0.0123] unit increase	Affymetrix [~ 7740000] (imputed)	N
1774	chr6	155929800	155929801	rs35229355	19176441	Yang JJ	2009-01-28	JAMA	Genome-wide interrogation of germline genetic variation associated with treatment response in childhood acute lymphoblastic leukemia.	Response to treatment for acute lymphoblastic leukemia	356 European ancestry cases, 53 Black cases, 78 cases	NA	6q25.3	intergenic	rs35229355-T	NR	5E-6		7.24	[2.46-21.30]	Affymetrix [476796]	N
1774	chr6	155942672	155942673	rs11751666	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in ever smokers	23,223 European ancestry cases,  16,964 European ancestry controls	NA	6q25.3	NOX3, MIR1202	rs11751666-G	0.011951814	7E-6		1.39231	[1.20459331-1.609279354]	Illumina [10439017] (imputed)	N
1774	chr6	155973785	155973789	rs543023132	28552477	Ilboudo Y	2017-05-13	Blood Cells Mol Dis	Genome-wide association study of erythrocyte density in sickle cell disease patients.	Red blood cell density in sickle cell anemia	374 cases	NA	6q25.3	Intergenic	rs543023132-G	0.02	1E-6		1.54	[0.95-2.13] unit decrease	Illumina [~ 31000000] (imputed)	N
1775	chr6	155984398	155984399	rs1391659	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Sunburns	approximately 344,000 European ancestry individuals	NA	6q25.3		rs1391659-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1775	chr6	155987787	155987788	rs9480184	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		6q25.3	NOX3	rs9480184-C	0.789213	5E-9		0.0098556	[0.0066-0.0132] unit decrease	Affymetrix [12370749]	N
1775	chr6	155987787	155987788	rs9480184	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6q25.3	NR	rs9480184-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
1775	chr6	155987787	155987788	rs9480184	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	6q25.3		rs9480184-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1775	chr6	155992437	155992438	rs62427491	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6q25.3	NR	rs62427491-?	NR	2E-6		4.711	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1775	chr6	155994556	155994557	rs9371912	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	6q25.3	RNU7-152P	rs9371912-?	NR	1E-10		0.016804537	[0.012-0.022] unit decrease	NR [7306098]	N
1775	chr6	156004662	156004663	rs956096	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	6q25.3	NR	rs956096-?	NR	4E-13				Affymetrix [NR]	N
1775	chr6	156004662	156004663	rs956096	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	6q25.3	NR	rs956096-A	NR	8E-6		1.07	[NR]	Illumina [7158791] (imputed)	N
1775	chr6	156020589	156020590	rs76785022	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6q25.3	NR	rs76785022-A	0.01045	2E-8	(RNPEP)	0.1234	NR unit increase	Illumina [1671387] (imputed)	N
1776	chr6	156150732	156150733	rs17086702	25575512	Lu W	2015-01-09	Hum Mol Genet	Evidence for several independent genetic variants affecting lipoprotein (a) cholesterol levels.	Lipoprotein (a) - cholesterol levels	1,376 Old Order Amish individuals	NA	6q25.3	intergenic	rs17086702-?	NR	4E-9				Affymetrix [~ 2500000] (imputed)	N
1776	chr6	156161091	156161092	rs10499297	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6q25.3	TFB1M	rs10499297-?	NR	6E-6	(glycine)	0.3430123	[0.19-0.49] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1776	chr6	156197501	156197502	rs4269383	22158540	Wu C	2011-12-11	Nat Genet	Genome-wide association study identifies five loci associated with susceptibility to pancreatic cancer in Chinese populations.	Pancreatic cancer	981 Han Chinese ancestry cases, 1,991 Han Chinese ancestry controls	2,603 Han Chinese ancestry cases, 2,877 Han Chinese ancestry controls	6q25.3	ARID1B	rs4269383-C	NR	7E-7		1.2	[1.12-1.30]	Affymetrix [666141]	N
1776	chr6	156201247	156201248	rs6909587	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Tenofovir clearance in HIV infection	243 European ancestry cases, 149 African American cases, 100 Hispanic American cases, 9 unknown ancestry cases	NA	6q25.3	NR	rs6909587-?		3E-7	(African)			Illumina [~ 5190000] (imputed)	N
1776	chr6	156234521	156234522	rs9371942	25985088	Oguchi T	2015-05-18	PLoS One	Investigation of susceptibility genes triggering lachrymal/salivary gland lesion complications in Japanese patients with type 1 autoimmune pancreatitis.	Lachrymal/Salivary gland lesion in type 1 autoimmune pancreatitis	50 Japanese ancestry cases with lesions, 53 Japanese ancestry cases without lesions	NA	6q25.3	LOC101928923	rs9371942-A	NR	4E-7		5.0	[2.38-10]	Affymetrix [12033]	N
1777	chr6	156265121	156265122	rs10457096	31935283	Du Z	2020-01-01	Blood Adv	A meta-analysis of genome-wide association studies of multiple myeloma among men and women of African ancestry.	Multiple myeloma	1,813 African American and African ancestry cases, 8,871 African American and African ancestry controls	NA	6q25.3	NR	rs10457096-G	0.02	3E-7		2.06	[1.56-2.73]	Illumina [12683648] (imputed)	N
1777	chr6	156311503	156311504	rs6936723	31311600	Namjou B	2019-07-17	BMC Med	GWAS and enrichment analyses of non-alcoholic fatty liver disease identify new trait-associated genes and pathways across eMERGE Network.	Nonalcoholic fatty liver disease	1,106 European ancestry cases, 8,571 European ancestry controls	NA	6q25.3	intergenic	rs6936723-C	0.572646	8E-6		1.2917644	[1.15-1.45]	NR [7263501] (imputed)	N
1777	chr6	156336300	156336301	rs114016490	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6q25.3	NR	rs114016490-A	0.0122	6E-11	(S100A9)	0.2246	NR unit decrease	Illumina [1671387] (imputed)	N
1777	chr6	156337303	156337304	rs17086954	26087016	Pappa I	2015-06-18	Am J Med Genet B Neuropsychiatr Genet	A genome-wide approach to children's aggressive behavior: The EAGLE consortium.	Early childhood aggressive behavior	15,668 European ancestry individuals	NA	6q25.3	LOC101928923	rs17086954-A	0.68	6E-6				Affymetrix, Illumina [up to 3856236] (imputed)	N
1777	chr6	156345145	156345146	rs1449672	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	6q25.3	NR	rs1449672-T	0.4302	5E-6	(Cis/trans-18:2, EA)	0.002	[0.0012-0.0028] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1777	chr6	156349184	156349185	rs1026153	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	6q25.3	NR	rs1026153-A	0.5721	5E-6	(Cis/trans-18:2, EA)	0.002	[0.0012-0.0028] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1778	chr6	156384966	156384967	rs17087007	25575512	Lu W	2015-01-09	Hum Mol Genet	Evidence for several independent genetic variants affecting lipoprotein (a) cholesterol levels.	Lipoprotein (a) - cholesterol levels	1,376 Old Order Amish individuals	NA	6q25.3	intergenic	rs17087007-?	NR	2E-8				Affymetrix [~ 2500000] (imputed)	N
1778	chr6	156388110	156388111	rs17765835	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	6q25.3		rs17765835-T	0.1	1E-9		6.05	z score increase	Affymetrix [9061022] (imputed)	N
1778	chr6	156431855	156431856	rs73008357	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	6q25.3	NR	rs73008357-C	0.121	1E-9		0.0103514	[0.007-0.0137] unit decrease	NR [9732723] (imputed)	N
1778	chr6	156431855	156431856	rs73008357	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	6q25.3	NR	rs73008357-C	0.121	2E-8		0.022309521	[0.014-0.03] unit decrease	NR [~ 10000000] (imputed)	N
1778	chr6	156448340	156448341	rs59903549	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	6q25.3	Intergenic	rs59903549-T	0.0687	1E-8	(MTAG)	0.0257	[0.017-0.035] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1778	chr6	156461870	156461871	rs6557472	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Face memory	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	6q25.3	intergenic	rs6557472-G	NR	4E-6		0.12370169	[0.07-0.178] unit increase	Illumina [> 6200000] (imputed)	N
1778	chr6	156467841	156467842	rs6557473	29621232	Spracklen CN	2018-04-05	PLoS Genet	Identification and functional analysis of glycemic trait loci in the China Health and Nutrition Survey.	Type 2 diabetes	748 Chinese ancestry cases, 4,983 Chinese ancestry controls	NA	6q25.3	ARID1B	rs6557473-A	0.3	3E-6		1.36		Illumina [8045193] (imputed)	N
1778	chr6	156478952	156478953	rs56222681	33445220	Li Y	2021-01-14	Am J Transplant	Donor genetic variants as risk factors for thrombosis after liver transplantation: A genome-wide association study.	Thrombosis in response to liver transplant	42 European ancestry pediatric cases, 268 European ancestry pediatric controls	64 European ancestry adult cases, 711 European ancestry adult controls	6q25.3	NR	rs56222681-A	0.1431	9E-6		2.3036	NR	Illumina [5393447] (imputed)	N
1779	chr6	156526680	156526681	rs188320715	28525603	Ortega-Alonso A	2017-05-19	Schizophr Bull	Genome-Wide Association Study of Psychosis Proneness in the Finnish Population.	Psychosis proneness (perceptual aberration scale and revised physical anhedonia scale)	3,812 Finnish ancestry individuals	NA	6q25.3	ARID1B	rs188320715-?		5E-8				Illumina [~ 9600000] (imputed)	N
1779	chr6	156577930	156577931	rs2818062	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	6q25.3	NR	rs2818062-G	NR	1E-9		0.015	[0.01-0.02] unit increase	Affymetrix [9000000] (imputed)	N
1779	chr6	156583466	156583467	rs7758644	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6q25.3		rs7758644-?	NR	9E-17				NR [~ 8900000] (imputed)	N
1779	chr6	156588019	156588020	rs17087282	25866641	Xu W	2015-03-19	Biomark Res	A genome wide association study on Newfoundland colorectal cancer patients' survival outcomes.	Survival in microsatellite instability low/stable colorectal cancer	431 European ancestry cases	NA	6q25.3	LOC101928923	rs17087282-?		2E-6	(overall survival)	2.47	[1.71-3.56]	Illumina [729737]	N
1779	chr6	156588113	156588114	rs17775862	26708285	Wakil SM	2016-02-01	Atherosclerosis	A genome-wide association study reveals susceptibility loci for myocardial infarction/coronary artery disease in Saudi Arabs.	Coronary artery disease	2,165 Saudi Arab ancestry cases, 2,266 Saudi Arab ancestry controls	503 Saudi Arab ancestry cases, 734 Saudi Arab ancestry controls	6q25.3	Intergenic	rs17775862-T	0.06	3E-7		1.55	[NR]	Affymetrix [537798]	N
1780	chr6	156657841	156657842	rs12213468	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6q25.3	NR	rs12213468-G	0.655773469069871	7E-6	(IGP8)	0.1455	[0.082-0.209] unit decrease	Illumina [~ 2500000] (imputed)	N
1780	chr6	156675648	156675649	rs6927921	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6q25.3	NOX3	rs6927921-?	NR	4E-6	(glycerol)	0.22302502	[0.13-0.32] unit increase	Affymetrix [at least 2500000] (imputed)	N
1780	chr6	156689448	156689449	rs9322572	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6q25.3	NR	rs9322572-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
1780	chr6	156689841	156689842	rs9384458	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	6q25.3		rs9384458-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1782	chr6	156913011	156913012	rs2817461	23834954	Kobayashi D	2013-07-08	Mol Pain	Genome-wide association study of sensory disturbances in the inferior alveolar nerve after bilateral sagittal split ramus osteotomy.	Sensory disturbances after bilateral sagittal split ramus osteotomy	Up to 105 individuals	Up to 200 individuals	6q25.3	ARID1B	rs2817461-?	NR	4E-8	(Hypoesthesia, Recessive)			Illumina [243229]	N
1782	chr6	156914984	156914985	rs4870470	30498476	Liu H	2018-11-15	Front Endocrinol (Lausanne)	Heritability and Genome-Wide Association Study of Plasma Cholesterol in Chinese Adult Twins.	Low density lipoprotein cholesterol levels	139 Chinese ancestry dizygotic twin pairs	NA	6q25.3	ARID1B	rs4870470-?		2E-6				Illumina [7405822] (imputed)	N
1782	chr6	156916765	156916766	rs9384478	25575512	Lu W	2015-01-09	Hum Mol Genet	Evidence for several independent genetic variants affecting lipoprotein (a) cholesterol levels.	Lipoprotein (a) - cholesterol levels	1,376 Old Order Amish individuals	NA	6q25.3	intergenic	rs9384478-?	NR	7E-9				Affymetrix [~ 2500000] (imputed)	N
1782	chr6	156938698	156938699	rs2817441	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	6q25.3		rs2817441-T	NR	5E-14		0.0169	[0.013-0.021] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
1782	chr6	156938698	156938699	rs2817441	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	6q25.3		rs2817441-T	0.279855	8E-10		0.015244267	[0.01-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1782	chr6	156938698	156938699	rs2817441	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	6q25.3		rs2817441-T	0.279864	2E-19		0.022261493	[0.017-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1782	chr6	156938698	156938699	rs2817441	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	6q25.3		rs2817441-T	0.27969	5E-11		0.016515015	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1782	chr6	156938698	156938699	rs2817441	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q25.3	NR	rs2817441-T	0.299923	3E-22				Affymetrix, Illumina [23467995] (imputed)	N
1782	chr6	156938698	156938699	rs2817441	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	6q25.3	NR	rs2817441-T	0.279268	5E-25		0.02173	[0.018-0.026] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1782	chr6	156938698	156938699	rs2817441	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	6q25.3	NR	rs2817441-C	0.720456	2E-11		0.014472	[0.01-0.019] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
1782	chr6	156938698	156938699	rs2817441	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	6q25.3	intergenic	rs2817441-T	0.2805	1E-10		0.02593072	[0.018-0.034] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1782	chr6	156976649	156976650	rs6919504	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	6q25.3		rs6919504-G	NR	2E-8		0.0625	[0.041-0.084] unit increase	Affymetrix, Illumina [25845091] (imputed)	N
1782	chr6	157009380	157009381	rs9384488	23419831	Ramanan VK	2013-02-19	Mol Psychiatry	APOE and BCHE as modulators of cerebral amyloid deposition: a florbetapir PET genome-wide association study.	Alzheimer's disease biomarkers	555 European ancestry individuals	NA	6q25.3	ARID1B	rs9384488-A	0.35	3E-6	(Cortical Ab)			Illumina [6108668] (imputed)	N
1783	chr6	157075799	157075800	rs73013270	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6q25.3		rs73013270-?	NR	8E-9				NR [~ 8900000] (imputed)	N
1783	chr6	157117321	157117322	rs4869893	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	6q25.3	NR	rs4869893-C	0.281972	1E-8		0.0155066	[0.01-0.021] unit increase	Affymetrix [16585745] (imputed)	N
1783	chr6	157124079	157124080	rs287884	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	6q25.3	NR	rs287884-A	0.44389500000000004	2E-11		0.0186304	[0.013-0.024] unit increase	Affymetrix [16580851] (imputed)	N
1783	chr6	157128256	157128257	rs11967485	24068962	O'Seaghdha CM	2013-09-19	PLoS Genet	Meta-analysis of genome-wide association studies identifies six new Loci for serum calcium concentrations.	Calcium levels	39,400 European ancestry individuals	Up to 21,679 European ancestry individuals	6q25.3	ARID1B	rs11967485-A	0.1	9E-7		0.026	[0.016-0.036] unit decrease	Affymetrix, Illumina [2500000] (imputed)	N
1783	chr6	157132634	157132635	rs4870492	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	6q25.3		rs4870492-C	0.664	9E-11		0.008	[0.006-0.01] unit increase	NR [NR] (imputed)	N
1783	chr6	157140076	157140077	rs287883	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	6q25.3	NR	rs287883-A	0.28827	4E-9		0.040757004	[0.027-0.054] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1783	chr6	157140076	157140077	rs287883	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	6q25.3	Intergenic	rs287883-A	0.7071	3E-9		0.0186	[0.013-0.025] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
1783	chr6	157140076	157140077	rs287883	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6q25.3	NR	rs287883-?	NR	3E-6		4.647	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1783	chr6	157143338	157143339	rs287879	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	6q25.3	Intergenic	rs287879-A	0.7009	2E-8	(MTAG)	0.0141	[0.0092-0.019] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1783	chr6	157143338	157143339	rs287879	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	6q25.3	NR	rs287879-A	NR	8E-10		6.136	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1784	chr6	157195979	157195980	rs2063714	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris color (b* coordinate)	329 South Asian ancestry individuals		6q25.3	ARID1B	rs2063714-G	0.432	7E-6		0.357	[0.2-0.51] unit increase	Illumina [640625] (imputed)	N
1784	chr6	157195979	157195980	rs2063714	25865494	Chan Y	2015-04-09	Am J Hum Genet	Genome-wide Analysis of Body Proportion Classifies Height-Associated Variants by Mechanism of Action and Implicates Genes Important for Skeletal Development.	Sitting height ratio	3,545 African American individuals, 12,965 European ancestry women, 8,625 European ancestry men	NA	6q25.3	NR	rs2063714-G	0.424	1E-7	(EA)	0.052	[0.032-0.072] unit decrease	Affymetrix, Illumina [up to 10250422] (imputed)	N
1784	chr6	157201930	157201931	rs158258	31786426	Farias Tempaku P	2019-08-14	Sleep Med	Genome-wide association study reveals two novel risk alleles for incident obstructive sleep apnea in the EPISONO cohort.	Obstructive sleep apnea trait (apnea hypopnea index, change over time)	404 European ancestry individuals, 97 Black individuals, 20 Asian ancestry individuals, 20 Indigenous individuals, 138 mixed race individuals, 27 individuals	NA	6q25.3	NR	rs158258-G	0.173	6E-6		0.231	[0.13-0.33] unit increase	Illumina [up to 730525]	N
1784	chr6	157216038	157216039	rs184074	25881214	Shah AA	2015-02-27	Heart Surg Forum	Genetic variants associated with vein graft stenosis after coronary artery bypass grafting.	Vein graft stenosis in coronary artery bypass grafting	361 European ancestry cases, 160 European ancestry controls	NA	6q25.3	ARID1B	rs184074-A	0.45	6E-6				Illumina [905781]	N
1784	chr6	157228313	157228314	rs28648619	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6q25.3	NR	rs28648619-G	0.0804	5E-6	(EA)	0.0551	[0.031-0.079] unit increase	Illumina [~ 11800000] (imputed)	N
1784	chr6	157234983	157234984	rs287932	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	6q25.3		rs287932-?	NR	9E-10				NR [~ 8900000] (imputed)	N
1784	chr6	157236425	157236426	rs113588399	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6q25.3		rs113588399-T	0.2079	2E-9		0.0104	[0.0071-0.0137] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1784	chr6	157245232	157245233	rs112140754	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	6q25.3	ARID1B	rs112140754-?	NR	2E-8	(African)			Affymetrix, Illumina [18800000] (imputed)	N
1784	chr6	157248326	157248327	rs9322589	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6q25.3	Intergenic	rs9322589-A	0.213	5E-9	(MTAG)	0.0094	[0.0063-0.0125] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1784	chr6	157251939	157251940	rs76136252	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6q25.3	NR	rs76136252-T	0.01394	4E-22	(SEPT11)	0.05703	NR unit increase	Illumina [1671387] (imputed)	N
1784	chr6	157271238	157271239	rs74952737	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Sunburns	approximately 344,000 European ancestry individuals	NA	6q25.3		rs74952737-?	NR	7E-8				NR [~ 8900000] (imputed)	N
1784	chr6	157283158	157283159	rs12197818	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q25.3	NR	rs12197818-T	0.31543	2E-13				Affymetrix, Illumina [24332387] (imputed)	N
1784	chr6	157284909	157284910	rs41321950	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q25.3	NR	rs41321950-A	0.315365	1E-11				Affymetrix, Illumina [24653286] (imputed)	N
1785	chr6	157287298	157287299	rs12208834	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	6q25.3	ARID1B	rs12208834-A		7E-6		0.177	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1785	chr6	157287298	157287299	rs12208834	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	6q25.3	ARID1B	rs12208834-A		4E-8		0.15	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1785	chr6	157288541	157288542	rs17322427	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	6q25.3		rs17322427-G	0.3	1E-21		9.54	z score increase	Affymetrix [9061022] (imputed)	N
1785	chr6	157288541	157288542	rs17322427	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	6q25.3	NR	rs17322427-G	0.329556	5E-15		0.015403	[0.012-0.019] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
1785	chr6	157288541	157288542	rs17322427	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	6q25.3	NR	rs17322427-G	0.328941	1E-12		0.013984	[0.01-0.018] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
1785	chr6	157288541	157288542	rs17322427	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	6q25.3	NR	rs17322427-G	0.328945	1E-13		0.014624	[0.011-0.018] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
1785	chr6	157288541	157288542	rs17322427	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	6q25.3		rs17322427-?	NR	1E-11				NR [~ 8900000] (imputed)	N
1785	chr6	157292245	157292246	rs12204990	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6q25.3	ARID1B	rs12204990-C		1E-10		0.015	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
1785	chr6	157293631	157293632	rs17087971	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	6q25.3		rs17087971-A	NR	6E-13		0.0137	[0.01-0.0174] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
1785	chr6	157293631	157293632	rs17087971	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	6q25.3		rs17087971-A	NR	3E-9		0.011	[0.0075-0.0145] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
1785	chr6	157293631	157293632	rs17087971	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	6q25.3	ARID1B	rs17087971-A	0.280352	1E-10		0.015699837	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1785	chr6	157297090	157297090	rs35611699	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	6q25.3	NR	rs35611699-?	NR	1E-7		0.180428	[0.11-0.25] unit increase	NR [13958389] (imputed)	N
1785	chr6	157321813	157321814	rs12203289	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	6q25.3		rs12203289-G	0.3	2E-10		6.36	z score increase	Affymetrix [9061022] (imputed)	N
1785	chr6	157321813	157321814	rs12203289	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	6q25.3	NR	rs12203289-G	0.3191	2E-10				NR [9056863] (imputed)	N
1785	chr6	157322762	157322763	rs11156131	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	6q25.3		rs11156131-G	NR	7E-10		0.0107	[0.0074-0.014] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
1785	chr6	157325487	157325487	rs138727422	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	6q25.3	ARID1B	rs138727422-GT	0.266568	3E-9		0.014710953	[0.0098-0.0196] unit increase	Affymetrix [93095623] (imputed)	N
1785	chr6	157331089	157331090	rs140842923	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6q25.3	NR	rs140842923-T	0.0214	3E-6	(EA)	0.1059	[0.062-0.15] unit increase	Illumina [~ 11800000] (imputed)	N
1785	chr6	157357090	157357091	rs2207227	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q25.3	NR	rs2207227-A	0.319661	7E-13				Affymetrix, Illumina [24558453] (imputed)	N
1785	chr6	157367017	157367018	rs2144023	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	6q25.3		rs2144023-?	NR	7E-12				NR [~ 8900000] (imputed)	N
1785	chr6	157380252	157380253	rs11961696	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	6q25.3		rs11961696-A	0.3	3E-11		6.63	z score increase	Affymetrix [9061022] (imputed)	N
1785	chr6	157380252	157380253	rs11961696	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	6q25.3	NR	rs11961696-A	0.3374	3E-13				NR [9056863] (imputed)	N
1785	chr6	157390671	157390672	rs12214204	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	6q25.3	ARID1B	rs12214204-A	0.829271	3E-12		0.0170034	[0.012-0.022] unit increase	NR [13737936] (imputed)	N
1785	chr6	157390671	157390672	rs12214204	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6q25.3		rs12214204-?	NR	4E-10		0.0176201	[0.012-0.023] unit increase	Affymetrix [20259828] (imputed)	N
1785	chr6	157409443	157409444	rs17088101	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	6q25.3	NR	rs17088101-T	1.0	3E-7		1.0	[-1.058-3.058]	Affymetrix [at least 143006] (imputed)	N
1786	chr6	157419507	157419508	rs9383820	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	6q25.3	ARID1B	rs9383820-C	0.76	1E-8		1.037	[1.02-1.05]	Affymetrix, Illumina [8307659] (imputed)	N
1786	chr6	157538644	157538645	rs141382233	28644415	Guenard F	2017-06-23	Nutrients	Genome-Wide Association Study of Dietary Pattern Scores.	Western dietary pattern	141 individuals	NA	6q25.3	ARID1B	rs141382233-?	NR	8E-7				Illumina [2668805]	N
1787	chr6	157549749	157549750	rs9406316	26377243	Li J	2015-09-17	J Hum Genet	Genome- and exome-wide association study of serum lipoprotein (a) in the Jackson Heart Study.	Lipoprotein (a) levels	2,895 African American individuals	NA	6q25.3	ARID1B, NOX3, TMEM242	rs9406316-C	0.49	1E-9		0.17	[0.11-0.23] unit increase	Affymetrix [up to 38000000] (imputed)	N
1787	chr6	157626333	157626334	rs7755533	31388106	Sofer T	2019-08-06	Sci Rep	Variants Associated with the Ankle Brachial Index Differ by Hispanic/Latino Ethnic Group: a genome-wide association study in the Hispanic Community Health Study/Study of Latinos.	Ankle-brachial index	1,437 Puerto Rican ancestry individuals	up to 8,527 European ancestry individuals, 2,362 African American individuals, 1,447 Hispanic/Latino individuals	6q25.3	TMEM242	rs7755533-G	0.59	9E-8	(Puerto Rican)	0.022	[0.014-0.030] unit increase	Illumina [27887661] (imputed)	N
1787	chr6	157637813	157637814	rs9379328	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	6q25.3	TMEM242	rs9379328-A	0.358	1E-9		0.0076	[0.0052-0.01] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
1788	chr6	157738257	157738258	rs9331343	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	6q25.3	NR	rs9331343-C	0.568	4E-8		0.014134519	[0.0091-0.0192] unit decrease	NR [~ 10000000] (imputed)	N
1788	chr6	157755448	157755449	rs139745352	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	6q25.3		rs139745352-A	0.01658	7E-6		0.11977	[0.067-0.172] unit increase	Affymetrix [15580782] (imputed)	N
1788	chr6	157770299	157770300	rs9347720	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	6q25.3	NR	rs9347720-C	0.568	3E-9		0.00670607	[0.0045-0.0089] unit decrease	NR [9732723] (imputed)	N
1788	chr6	157789332	157789333	rs34517852	31594949	Nievergelt CM	2019-10-08	Nat Commun	International meta-analysis of PTSD genome-wide association studies identifies sex- and ancestry-specific genetic risk loci.	Post-traumatic stress disorder	23,212 European ancestry cases, 4,363 African ancestry cases, 1,981 Latino and Native American ancestry cases, 151,447 European ancestry controls, 10,976 African ancestry controls, 3,722 Latino and Native American ancestry controls	NA	6q25.3	NR	rs34517852-A	NR	3E-9	(EA)	1.12	[1.08-1.16]	Affymetrix, Illumina [~ 1175791] (imputed)	N
1788	chr6	157801185	157801186	rs2800445	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	6q25.3	NR	rs2800445-G	0.164447	4E-19		0.023246	[0.018-0.028] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1789	chr6	157840186	157840187	rs62422846	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	6q25.3	ZDHHC14	rs62422846-T	0.812902	2E-13		0.021205284	[0.016-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1789	chr6	157840186	157840187	rs62422846	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q25.3	NR	rs62422846-C	0.199443	4E-17				Affymetrix, Illumina [17210439] (imputed)	N
1789	chr6	157855249	157855250	rs181143083	28334935	Raffield LM	2017-05-15	Hum Mol Genet	Genome-wide association study of iron traits and relation to diabetes in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL): potential genomic intersection of iron and glucose regulation?	Iron status biomarkers (transferrin saturation)	12,589 Hispanic/Latino individuals	NA	6q25.3	ZDHHC14	rs181143083-T	NR	2E-7		0.851	[0.53-1.17] unit decrease	Illumina [27700000] (imputed)	N
1789	chr6	157855249	157855250	rs181143083	28334935	Raffield LM	2017-05-15	Hum Mol Genet	Genome-wide association study of iron traits and relation to diabetes in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL): potential genomic intersection of iron and glucose regulation?	Iron status biomarkers (iron levels)	12,580 Hispanic/Latino individuals	NA	6q25.3	ZDHHC14	rs181143083-T	NR	9E-10		1.641	[1.12-2.17] unit decrease	Illumina [27700000] (imputed)	N
1789	chr6	157882786	157882787	rs2180414	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	6q25.3		rs2180414-?	NR	4E-10				NR [~ 8900000] (imputed)	N
1789	chr6	157913475	157913476	rs2070276	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	7,894 Sub-Saharan African ancestry individuals	NA	6q25.3		rs2070276-C	0.830051	8E-6		0.0111406	[0.0062-0.0161] unit increase	Illumina [13900000] (imputed)	N
1789	chr6	157918347	157918348	rs9355270	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	UBA8517 abundance in stool	5,959 Finnish ancestry individuals	NA	6q25.3		rs9355270-C	0.4246	4E-8		0.0308405	[0.02-0.042] unit decrease	Illumina [7980478] (imputed)	N
1790	chr6	157956466	157956467	rs9331341	34154395	Brikell I	2021-06-22	Am J Psychiatry	Genetic, Clinical, and Sociodemographic Factors Associated With Stimulant Treatment Outcomes in ADHD.	Switch to non-stimulant treatment in ADHD	1,137 European ancestry cases, 3,854 European ancestry controls	NA	6q25.3		rs9331341-T	0.11	2E-6		0.064	[0.039-0.089] unit decrease	Illumina [6361597] (imputed)	N
1790	chr6	157970409	157970410	rs144023169	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		ZDHHC14	rs144023169-?	NR	3E-8		1.56359	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1790	chr6	158010690	158010691	rs111226164	30694715	Sakornsakolpat P	2019-01-29	Am J Respir Cell Mol Biol	Genome-Wide Association Analysis of Single Breath Diffusing Capacity of Carbon Monoxide (DLCO).	Diffusing capacity of carbon monoxide	2,584 European ancestry individuals with chronic obstructive pulmonary disease, 3,002 European ancestry healthy individuals, 343 African American individuals with chronic obstructive pulmonary disease, 1,006 African American healthy individuals	NA	6q25.3	ZDHHC14	rs111226164-G	0.01	9E-7	(African American)	0.93	0.56-1.3 unit increase	Illumina [NR] (imputed)	N
1790	chr6	158013724	158013725	rs749547	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body fat mass	3,399 whole genome sequenced individuals, 11,802 European ancestry individuals	10,670 European ancestry individuals	6q25.3	ZDHHC14	rs749547-A	0.2103	7E-6		0.0686	[0.039-0.098] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1790	chr6	158030720	158030721	rs142170828	34642315	Ferreiro-Iglesias A	2021-10-12	Nat Commun	Germline determinants of humoral immune response to HPV-16 protect against oropharyngeal cancer.	Human papilloma virus 16 positive oropharyngeal cancer	1,078 European ancestry cases, 5,256 European ancestry controls	NA	6q25.3		rs142170828-A	NR	1E-6		1.6965		Illumina [7574753] (imputed)	N
1790	chr6	158034979	158034980	rs3933566	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	6q25.3	NR	rs3933566-?	NR	4E-14		7.569	NR z score decrease	Illumina [at least 830937] (imputed)	N
1790	chr6	158039826	158039827	rs139712926	31151762	Gelernter J	2019-04-08	Biol Psychiatry	Genome-wide Association Study of Maximum Habitual Alcohol Intake in >140,000 U.S. European and African American Veterans Yields Novel Risk Loci.	Maximum habitual alcohol consumption	126,936 European ancestry individuals, 17,029 African American individuals	NA	6q25.3	NR	rs139712926-T	NR	1E-6	(AA)	0.181911	[0.11-0.26] unit decrease	Affymetrix [up to 6007810] (imputed)	N
1790	chr6	158041282	158041283	rs2163287	22041458	Clark SL	2011-11-01	Psychol Med	Pharmacogenomic study of side-effects for antidepressant treatment options in STAR*D.	Response to anti-depressant treatment in major depressive disorder	1,151 European ancestry cases, 288 African American cases	NA	6q25.3	ZDHHC14	rs2163287-A	0.02	3E-6	(Citalopram+Buspirone, Dizziness)			Affymetrix [421789]	N
1791	chr6	158092637	158092638	rs688181	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	6q25.3		rs688181-C	NR	6E-10		0.0133	[0.0092-0.0174] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1791	chr6	158092637	158092638	rs688181	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	6q25.3	ZDHHC14	rs688181-C	0.718456	4E-47		0.036073238	[0.031-0.041] unit increase	Affymetrix [93095623] (imputed)	N
1791	chr6	158092637	158092638	rs688181	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	6q25.3	ZDHHC14	rs688181-C	0.7181	2E-16		0.03269938	[0.025-0.041] unit increase	Affymetrix [~ 2500000] (imputed)	N
1791	chr6	158092647	158092648	rs688167	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	6q25.3	ZDHHC14	rs688167-G	0.715704	9E-16		0.020053605	[0.015-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1791	chr6	158092979	158092980	rs9355333	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6q25.3	SNX9	rs9355333-?	NR	7E-6	(dimethylglycine)	0.23399176	[0.13-0.34] unit increase	Affymetrix [at least 2500000] (imputed)	N
1791	chr6	158198692	158198693	rs352194	28322283	Chibnik LB	2017-03-21	Mol Psychiatry	Susceptibility to neurofibrillary tangles: role of the PTPRD locus and limited pleiotropy with other neuropathologies.	Microscopic brain infarct	253 European ancestry cases, 656 European ancestry controls	369 individuals	6q25.3	NR	rs352194-A	0.59	1E-5	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1792	chr6	158206363	158206364	rs6922614	28632202	Witt SH	2017-06-20	Transl Psychiatry	Genome-wide association study of borderline personality disorder reveals genetic overlap with bipolar disorder, major depression and schizophrenia.	Borderline personality disorder	998 European ancestry cases, 1,545 European ancestry controls	NA	6q25.3	SNX9	rs6922614-T	0.888	4E-6		1.7794	[1.53-2.03]	Illumina [10736316] (imputed)	N
1792	chr6	158219012	158219013	rs9356009	25575512	Lu W	2015-01-09	Hum Mol Genet	Evidence for several independent genetic variants affecting lipoprotein (a) cholesterol levels.	Lipoprotein (a) - cholesterol levels	1,376 Old Order Amish individuals	NA	6q25.3	intergenic	rs9356009-?	NR	4E-19				Affymetrix [~ 2500000] (imputed)	N
1792	chr6	158241702	158241704	rs71826849	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	6q25.3	SNX9	rs71826849-C	0.0589	4E-11		0.05037571	[0.035-0.065] unit increase	Affymetrix [~ 2500000] (imputed)	N
1792	chr6	158256227	158256228	rs6455847	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q25.3	NR	rs6455847-A	0.221699	3E-10				Affymetrix, Illumina [24588908] (imputed)	N
1792	chr6	158263455	158263456	rs9346930	25575512	Lu W	2015-01-09	Hum Mol Genet	Evidence for several independent genetic variants affecting lipoprotein (a) cholesterol levels.	Lipoprotein (a) - cholesterol levels	1,376 Old Order Amish individuals	NA	6q25.3	SNX9	rs9346930-?	NR	5E-17				Affymetrix [~ 2500000] (imputed)	N
1792	chr6	158265785	158265786	rs34804891	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	6q25.3	Intergenic	rs34804891-T	NR	6E-8	(between families)	5.425	unit increase	Affymetrix [up to 15107142] (imputed)	N
1792	chr6	158297950	158297951	rs117753825	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	L1-L4 bone mineral density x serum urate levels interaction	2,207 men, 2,354 women	NA		SNX9	rs117753825-?	NR	2E-7	(male)	4.13801	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1792	chr6	158299951	158299952	rs9356100	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	6q25.3	SNX9	rs9356100-T	0.057647	4E-19		0.043323714	[0.034-0.053] unit increase	Affymetrix [93095623] (imputed)	N
1792	chr6	158322994	158322995	rs61748681	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	6q25.3	SNX9	rs61748681-A	0.012131	4E-9		0.06270101	[0.042-0.084] unit decrease	Affymetrix [93095623] (imputed)	N
1793	chr6	158360690	158360691	rs2364349	29478026	Shahin MH	2018-02-24	J Am Heart Assoc	Genome-Wide Association Approach Identified Novel Genetic Predictors of Heart Rate Response to ?-Blockers.	Heart rate response to beta blockers	426 European American hypertensive individuals, 273 African American hypertensive individuals	200 European American hypertensive individuals, 168 African American hypertensive individuals	6q25.3	SNX9	rs2364349-A	0.18	1E-8	(AA)	3.5	NR bpm decrease	Illumina [at least 1100000] (imputed)	N
1793	chr6	158371083	158371084	rs9347800	25575512	Lu W	2015-01-09	Hum Mol Genet	Evidence for several independent genetic variants affecting lipoprotein (a) cholesterol levels.	Lipoprotein (a) - cholesterol levels	1,376 Old Order Amish individuals	NA	6q25.3	intergenic	rs9347800-?	NR	2E-16				Affymetrix [~ 2500000] (imputed)	N
1793	chr6	158382986	158382987	rs6940925	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	6q25.3		rs6940925-A	NR	1E-9		0.017	[0.012-0.022] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
1793	chr6	158389740	158389741	rs9458975	22823124	Verweij KJ	2012-07-24	Addict Biol	The genetic aetiology of cannabis use initiation: a meta-analysis of genome-wide association studies and a SNP-based heritability estimation.	Cannabis use (initiation)	10,091 individuals from 4,622 families	NA	6q25.3	SYNJ2	rs9458975-T	0.45	7E-6		0.026	unit increase	Illumina [~ 2400000] (imputed)	N
1793	chr6	158398814	158398815	rs12528678	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cholelithiasis	26,122 European ancestry cases, 461,431 European ancestry controls, 9,305 East Asian ancestry cases, 168,253 East Asian ancestry controls	NA	6q25.3		rs12528678-T	NR	4E-13		0.0824	[0.06-0.105] unit increase	Affymetrix, Illumina [25844936] (imputed)	N
1793	chr6	158398814	158398815	rs12528678	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	6q25.3	NR	rs12528678-T	NR	7E-17		0.0245	[0.019-0.03] unit increase	Affymetrix [9000000] (imputed)	N
1793	chr6	158414307	158414308	rs9365682	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	6q25.3	SYNJ2-IT1	rs9365682-C	0.691698	6E-13		0.00172471	[0.0012-0.0022] unit decrease	Affymetrix [13995440] (imputed)	N
1793	chr6	158427932	158427933	rs59014097	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-like 1 protein levels	252 European ancestry individuals	NA	6q25.3		rs59014097-T	NR	5E-6		0.28446	[0.16-0.4] unit decrease	Illumina [NR] (imputed)	N
1794	chr6	158467988	158467989	rs2181190	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	6q25.3	SYNJ2	rs2181190-T	0.8141	3E-9		0.111	[0.076-0.146] unit decrease	Affymetrix [~ 11900000] (imputed)	N
1794	chr6	158473001	158473002	rs2986010	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	6q25.3	SYNJ2	rs2986010-A	0.369139	6E-16		0.019112926	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1794	chr6	158480143	158480144	rs1750034	28881265	Sobalska-Kwapis M	2017-09-01	Eur J Obstet Gynecol Reprod Biol	New variants near RHOJ and C2, HLA-DRA region and susceptibility to endometriosis in the Polish population-The genome-wide association study.	Endometriosis	171 European ancestry cases, 2,934 European ancestry controls	NA	6q25.3	NR	rs1750034-T	0.1042	7E-7		2.018	[1.521-2.678]	Illumina [274400]	N
1794	chr6	158484903	158484904	rs141160611	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	6q25.3		rs141160611-C	NR	2E-23		0.0976	[0.078-0.117] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
1794	chr6	158484903	158484904	rs141160611	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	133,471 East Asian ancestry individuals	NA	6q25.3		rs141160611-C	0.032818	2E-23		0.0975408	[0.078-0.117] unit decrease	Illumina [13476165] (imputed)	N
1794	chr6	158484903	158484904	rs141160611	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Gamma glutamyl transferase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	6q25.3	SYNJ2	rs141160611-?		6E-19		0.1117	[0.087-0.136] unit increase	Illumina [31500000] (imputed)	N
1794	chr6	158484903	158484904	rs141160611	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Gamma glutamyl transferase levels	118,309 Japanese ancestry individuals	NA	6q25.3	SYNJ2	rs141160611-?	NR	1E-21		0.1117	[0.089-0.135] unit decrease novel	Illumina [6108953] (imputed)	N
1794	chr6	158492659	158492660	rs146694394	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Gamma glutamyl transferase levels	437,651 European ancestry individuals	NA	6q25.3		rs146694394-?	NR	4E-24		0.134377	[0.11-0.16] unit decrease	NR [9800000] (imputed)	N
1794	chr6	158492659	158492660	rs146694394	34108613	Ivarsdottir EV	2021-06-09	Commun Biol	The genetic architecture of age-related hearing impairment revealed by genome-wide association analysis.	Age-related hearing impairment	121,934 European ancestry cases, 591,699 European ancestry controls	NA	6q25.3	SYNJ2	rs146694394-T	0.46	8E-14	(additive)	1.32	[NR]	Affymetrix, Illumina [46900000] (imputed)	N
1794	chr6	158505853	158505854	rs6902016	32986727	Kalra G	2020-09-28	PLoS Genet	Biological insights from multi-omic analysis of 31 genomic risk loci for adult hearing difficulty.	Age-related hearing impairment (MTAG)	330,759 European ancestry individuals	NA	6q25.3		rs6902016-?	NR	1E-12		7.124813	z score increase	Affymetrix [NR] (imputed)	N
1794	chr6	158507999	158508000	rs148053948	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Gamma glutamyl transferase levels	437,651 European ancestry individuals	NA	6q25.3		rs148053948-?	NR	8E-27		0.18413	[0.15-0.22] unit decrease	NR [9800000] (imputed)	N
1794	chr6	158513755	158513756	rs73021932	34834492	Espuela-Ortiz A	2021-11-03	J Pers Med	Role of Sex on the Genetic Susceptibility to Childhood Asthma in Latinos and African Americans.	Childhood asthma x sex interaction	3,371 African ancestry, European ancestry, Native American ancestry cases, 2,650 African ancestry, European ancestry, Native American ancestry controls	NA	6q25.3		rs73021932-T	NR	2E-6		0.55	[0.29-1.08]	Affymetrix [6680224] (imputed)	N
1794	chr6	158533559	158533560	rs2475553	25575512	Lu W	2015-01-09	Hum Mol Genet	Evidence for several independent genetic variants affecting lipoprotein (a) cholesterol levels.	Lipoprotein (a) - cholesterol levels	1,376 Old Order Amish individuals	NA	6q25.3	SERAC1	rs2475553-?	NR	2E-8				Affymetrix [~ 2500000] (imputed)	N
1794	chr6	158572378	158572379	rs6909229	26377243	Li J	2015-09-17	J Hum Genet	Genome- and exome-wide association study of serum lipoprotein (a) in the Jackson Heart Study.	Lipoprotein (a) levels	2,895 African American individuals	NA	6q25.3	SYNJ2, SERAC1, GTF2H5, TULP4	rs6909229-C	0.07	4E-10		0.27	[0.19-0.35] unit decrease	Affymetrix [up to 38000000] (imputed)	N
1795	chr6	158600946	158600947	rs138501510	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hearing difficulty/problems: Yes (UKB data field 2247_1)	114,318 European ancestry cases, 323,449 European ancestry controls	NA	6q25.3		rs138501510-A	0.003891	6E-13		0.28	[0.2-0.36] unit increase	NR [11842647] (imputed)	N
1795	chr6	158600946	158600947	rs138501510	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hearing difficulty/problems: No (UKB data field 2247_0)	323,343 European ancestry cases, 114,424 European ancestry controls	NA	6q25.3		rs138501510-A	0.004979	3E-13		0.29	[0.21-0.37] unit decrease	NR [11842647] (imputed)	N
1795	chr6	158607472	158607473	rs4560672	24665060	Argos M	2014-03-24	J Med Genet	Genome-wide association study of smoking behaviours among Bangladeshi adults.	Smoking quantity	1,837 Bangladeshi ancestry males, 198 Bangladeshi ancestry females	NA	6q25.3	NR	rs4560672-?		8E-6				Illumina [1211988] (imputed)	N
1795	chr6	158611257	158611258	rs9365994	29678681	Matana A	2018-04-18	Genomics	Genome-wide meta-analysis identifies novel gender specific loci associated with thyroid antibodies level in Croatians.	Plasma anti-thyroglobulin levels	1,596 Croatian ancestry women, 1,033 Croatian ancestry men	NA	6q25.3	GTF2H5	rs9365994-C	NR	7E-7	(men)	0.2678879	[0.16-0.37] unit increase	Illumina [5527232] (imputed)	N
1795	chr6	158624813	158624814	rs644637	29293537	Gorlova OY	2018-01-02	PLoS One	Gene-level association analysis of systemic sclerosis: A comparison of African-Americans and White populations.	Systemic sclerosis	1,833 European ancestry cases, 3,466 European ancestry controls, 291 African American cases, 260 African American controls	NA	6q25.3	SERAC1, GTF2H5	rs644637-?		5E-6	(AA)			Illumina [~ 2500000] (imputed)	N
1795	chr6	158648780	158648781	rs138560005	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Hepatitis A	2,442 European ancestry cases, 217,137 European ancestry controls	NA	6q25.3	NR	rs138560005-?	NR	6E-6		7.7623	[1.22-14.3] unit decrease	Illumina [at least 560000] (imputed)	N
1795	chr6	158658081	158658082	rs79147119	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	6q25.3	Intergenic	rs79147119-C	0.8546	1E-8	(MTAG)	0.0186	[0.012-0.025] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1795	chr6	158658787	158658788	rs661857	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	6q25.3		rs661857-?	NR	1E-7				NR [~ 8900000] (imputed)	N
1795	chr6	158670121	158670121	rs3884262	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	6q25.3	TULP4	rs3884262-CA	0.2652	6E-23		0.0215	[0.017-0.026] unit increase	Affymetrix [18391927] (imputed)	N
1795	chr6	158676148	158676149	rs262823	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	6q25.3		rs262823-?	NR	4E-13				NR [~ 8900000] (imputed)	N
1795	chr6	158722033	158722034	rs1832871	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	6q25.3	TULP4	rs1832871-A	0.337	2E-15		0.025	[0.019-0.031] unit increase	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
1795	chr6	158726710	158726711	rs9346746	34356046	Oluwafemi OO	2021-07-01	Genes (Basel)	Genome-Wide Association Studies of Conotruncal Heart Defects with Normally Related Great Vessels in the United States.	Conotruncal heart defects with normally related great vessels (without 22q.11.2 deletion syndrome)	294 European ancestry cases, 2,976 European ancestry controls, 641 trios	NA	6q25.3		rs9346746-?	NR	3E-6				Illumina [3311160] (imputed)	N
1795	chr6	158726916	158726917	rs6919284	34356046	Oluwafemi OO	2021-07-01	Genes (Basel)	Genome-Wide Association Studies of Conotruncal Heart Defects with Normally Related Great Vessels in the United States.	Conotruncal heart defects with normally related great vessels	294 European ancestry cases, 2,976 European ancestry controls, 913 cases, 559 controls, 641 trios	NA	6q25.3		rs6919284-?	NR	3E-6				Affymetrix, Illumina [3311160] (imputed)	N
1796	chr6	158737648	158737649	rs6933038	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	6q25.3		rs6933038-G	NR	1E-8		0.0131	[0.0086-0.0176] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
1796	chr6	158738974	158738975	rs10945540	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6q25.3		rs10945540-?	NR	9E-37				NR [~ 8900000] (imputed)	N
1796	chr6	158750498	158750498	rs10671642	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	6q25.3	TULP4	rs10671642-TAAA	0.9206273	5E-11		0.027586034	[0.019-0.036] unit increase	Affymetrix [93095623] (imputed)	N
1796	chr6	158755436	158755437	rs2105333	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	6q25.3		rs2105333-G	NR	3E-8		0.0109	[0.007-0.0148] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1796	chr6	158755436	158755437	rs2105333	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	6q25.3		rs2105333-G	NR	1E-24		0.0158	[0.013-0.019] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1796	chr6	158775331	158775332	rs705953	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6q25.3	NR	rs705953-?	NR	7E-6		4.489	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1796	chr6	158786664	158786665	rs143500414	33730874	Said MA	2021-03-18	Arterioscler Thromb Vasc Biol	Genome-Wide Association Study and Identification of a Protective Missense Variant on Lipoprotein(a) Concentration: Protective Missense Variant on Lipoprotein(a) Concentration.	Lipoprotein (a) levels	348,591 European ancestry individuals, 6,000 African ancestry individuals, 9,116 Asian ancestry individuals, 7,505 individuals		6q25.3	TULP4	rs143500414-T	NR	5E-12		0.05148	[0.037-0.066] nmol/l decrease	NR [19000000] (imputed)	N
1796	chr6	158789191	158789192	rs117534691	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs117534691-C	NR	3E-11		0.0907	[0.064-0.117] unit increase	Affymetrix [9000000] (imputed)	N
1796	chr6	158841724	158841725	rs341147	33692100	Simcoe M	2021-03-10	Sci Adv	Genome-wide association study in almost 195,000 individuals identifies 50 previously unidentified genetic loci for eye color.	Eye color	157,485 European ancestry individuals	35,501 European ancestry individuals, 959 Han Chinese ancestry individuals, 677 Indian ancestry individuals	6q25.3		rs341147-G	0.343	6E-9	(EA)	0.045	[0.03-0.06] unit decrease	Illumina [11532091] (imputed)	N
1797	chr6	158875546	158875546	rs35267182	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6q25.3		rs35267182-?	NR	9E-11		0.0138877	[0.0096-0.0182] unit decrease	Affymetrix [20259828] (imputed)	N
1797	chr6	158882319	158882320	rs10698713	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	6q25.3	NR	rs10698713-A	0.0544	2E-9		0.03351702	[0.023-0.045] unit decrease	NR [~ 10000000] (imputed)	N
1797	chr6	158894989	158894990	rs143465123	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	6q25.3		rs143465123-C	0.94	8E-11		0.017	[0.011-0.023] unit increase	NR [NR] (imputed)	N
1797	chr6	158894989	158894990	rs143465123	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	6q25.3	NR	rs143465123-T	0.0543	3E-12		0.0167483	[0.012-0.021] unit decrease	NR [9732723] (imputed)	N
1797	chr6	158901534	158901535	rs10499310	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6q25.3	TULP4	rs10499310-A	0.7647	7E-6		0.0341	[0.019-0.049] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1797	chr6	158908451	158908452	rs116229832	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6q25.3	NR	rs116229832-G	0.01045	3E-8	(RAB14)	0.03005	NR unit increase	Illumina [1671387] (imputed)	N
1797	chr6	158910697	158910698	rs12206717	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	6q25.3	TULP4	rs12206717-G	0.9425	1E-13		0.0290676	[0.021-0.037] unit decrease	NR [13737936] (imputed)	N
1797	chr6	158910697	158910698	rs12206717	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	6q25.3		rs12206717-?	NR	4E-13				NR [~ 8900000] (imputed)	N
1797	chr6	158913549	158913550	rs77508964	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Hyperopia	10,828 European ancestry hyperopia cases, 21,416 European ancestry emmetropia controls	NA	6q25.3	NR	rs77508964-?	NR	4E-6		0.273515	[0.16-0.39] unit decrease	NR [13958389] (imputed)	N
1797	chr6	158915284	158915285	rs17504333	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6q25.3	TULP4	rs17504333-C	0.05893	1E-10		0.03003859	[0.021-0.039] unit increase	Affymetrix [93095623] (imputed)	N
1797	chr6	158915284	158915285	rs17504333	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6q25.3	TULP4	rs17504333-A	0.937	8E-7		0.0707	[0.043-0.099] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1797	chr6	158929441	158929442	rs9456307	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6q25.3	NR	rs9456307-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1797	chr6	158929441	158929442	rs9456307	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	6q25.3	TULP4	rs9456307-A	0.06	2E-9		0.048	[NR] unit decrease	Affymetrix, Illumina [2834208] (imputed)	N
1797	chr6	158929959	158929960	rs116886320	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	6q25.3	Intergenic	rs116886320-A	NR	3E-7	(between families)	5.116	unit increase	Affymetrix [up to 15107142] (imputed)	N
1797	chr6	158947190	158947191	rs80065224	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	6q25.3	TMEM181	rs80065224-A	0.0147978273830893	8E-6	(G_Eisenbergiella_HB)	0.982861	[0.55-1.41] unit increase	Illumina [7711310] (imputed)	N
1797	chr6	158949999	158950000	rs117395088	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6q25.3		rs117395088-?	NR	2E-14				NR [~ 8900000] (imputed)	N
1797	chr6	158958105	158958106	rs930451	25475840	Colodro-Conde L	2014-12-05	Twin Res Hum Genet	A twin study of breastfeeding with a preliminary genome-wide association scan.	Breastfeeding duration	1,521 mothers from 1,073 families	NA	6q25.3	OXER1, HAAO, MTA3	rs930451-?	NR	1E-6		0.204	[0.12-0.29] unit decrease	Illumina [6590000] (imputed)	N
1797	chr6	158971955	158971956	rs4709210	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Intraocular pressure	133,492 European ancestry individuals	NA	6q25.3	TMEM181	rs4709210-T	0.72	1E-6				Affymetrix, Illumina [8002429] (imputed)	N
1797	chr6	158971955	158971956	rs4709210	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Glaucoma	7,947 British ancestry cases, 119,318 British ancestry controls	NA	6q25.3	TMEM181	rs4709210-T	0.72	7E-6		1.09	NR	Affymetrix [at least 8002429] (imputed)	N
1797	chr6	158975715	158975716	rs9364973	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	6q25.3	TMEM181	rs9364973-C	0.715	7E-10		0.087	[0.06-0.114] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1797	chr6	158976276	158976277	rs4709212	29891935	Choquet H	2018-06-11	Nat Commun	A multiethnic genome-wide association study of primary open-angle glaucoma identifies novel risk loci.	Glaucoma (primary open-angle)	10,523 European ancestry cases, 203,579 European ancestry controls, 411 Hispanic cases, 4,778 Hispanic controls, 463 East Asian ancestry cases, 4,907 East Asian ancestry controls, 298 African American cases, 1,549 African American controls, 204 South Asian ancestry cases, 4,916 South Asian ancestry controls, 272 African British cases, 4,831 African British controls, 144 mixed ancestry cases, 3,427 mixed ancestry controls	NA	6q25.3	TMEM181	rs4709212-C	NR	8E-9		1.09	1.06-1.12	Affymetrix [at least 665500] (imputed)	N
1798	chr6	159004471	159004472	rs4708796	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6q25.3	NR	rs4708796-T	0.0122	9E-9	(EMILIN2)	0.1241	NR unit increase	Illumina [1671387] (imputed)	N
1798	chr6	159060271	159060272	rs116968476	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs116968476-T	NR	2E-9		0.0726	[0.049-0.096] unit increase	Affymetrix [9000000] (imputed)	N
1798	chr6	159068713	159068714	rs13198609	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs13198609-T	NR	5E-9		0.0208	[0.014-0.028] unit decrease	Affymetrix [9000000] (imputed)	N
1798	chr6	159086589	159086590	rs774717593	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Lipoprotein (a) levels	348,806 European ancestry individuals	NA	6q25.3		rs774717593-?	NR	1E-11		0.902583	[0.63-1.17] unit increase	NR [9800000] (imputed)	N
1798	chr6	159101292	159101293	rs317789	31388106	Sofer T	2019-08-06	Sci Rep	Variants Associated with the Ankle Brachial Index Differ by Hispanic/Latino Ethnic Group: a genome-wide association study in the Hispanic Community Health Study/Study of Latinos.	Peripheral artery disease (borderline)	2,104 Hispanic/Latino cases, 5,293 Hispanic/Latino controls	NA	6q25.3	SYTL3	rs317789-?	NR	8E-7				Illumina [27887661] (imputed)	N
1798	chr6	159102448	159102449	rs75119232	31497858	Dumitrescu L	2019-09-01	Brain	Sex differences in the genetic predictors of Alzheimer's pathology.	Neuritic plaque	2,701 European ancestry men, 3,275 European ancestry women	NA	6q25.3	SYTL3	rs75119232-T	0.022311	4E-6		1.128396	[0.65-1.61] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1798	chr6	159105412	159105413	rs1979541	26377243	Li J	2015-09-17	J Hum Genet	Genome- and exome-wide association study of serum lipoprotein (a) in the Jackson Heart Study.	Lipoprotein (a) levels	2,895 African American individuals	NA	6q25.3	SYTL3	rs1979541-G	0.63	2E-13		0.18	[0.14-0.22] unit increase	Affymetrix [up to 38000000] (imputed)	N
1799	chr6	159191787	159191788	rs3212308	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	6q25.3	EZR	rs3212308-?	NR	9E-55		1.1275228	NR	Affymetrix [9154080] (imputed)	N
1799	chr6	159223768	159223769	rs34846636	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	6q25.3		rs34846636-T	NR	8E-11		0.0139	[0.0098-0.018] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
1799	chr6	159224560	159224561	rs9457466	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	6q25.3	NR	rs9457466-A	0.36269	2E-9		0.0170004	[0.011-0.023] unit increase	Affymetrix [16580851] (imputed)	N
1799	chr6	159231486	159231487	rs3123132	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	6q25.3		rs3123132-T	0.36	2E-9		5.99	z score increase	Affymetrix [9061022] (imputed)	N
1799	chr6	159233042	159233043	rs9347258	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	6q25.3		rs9347258-?	NR	7E-124				NR [~ 8900000] (imputed)	N
1799	chr6	159233042	159233043	rs9347258	29662168	Hysi PG	2018-04-16	Nat Genet	Genome-wide association meta-analysis of individuals of European ancestry identifies new loci explaining a substantial fraction of hair color variation and heritability.	Hair color	290,891 European ancestry individuals	27,865 European ancestry individuals	6q25.3	EZR	rs9347258-T	0.497	1E-77		0.049	[0.043-0.055] unit decrease	Affymetrix, Illumina [at least 560000] (imputed)	N
1799	chr6	159246716	159246717	rs923198	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Brown vs. black hair color	269,394 British ancestry brown hair individuals, 14,526 British ancestry black hair individuals	NA	6q25.3	EZR	rs923198-?	NR	4E-13		1.0931351	NR	Affymetrix [9154080] (imputed)	N
1799	chr6	159248430	159248431	rs9457478	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 116)	19,670 European ancestry individuals	NA	6q25.3		rs9457478-?	NR	5E-9				NR [9705931] (imputed)	N
1799	chr6	159248430	159248431	rs9457478	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	6q25.3		rs9457478-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1799	chr6	159248729	159248730	rs3127166	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	6q25.3	SYTL3, EZR, OSTCP1	rs3127166-?		5E-9				Affymetrix, Illumina [NR] (imputed)	N
1800	chr6	159260986	159260987	rs73013664	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	6q25.3	EZR	rs73013664-T	0.18	1E-25		1.134	NR	Affymetrix [9154080] (imputed)	N
1800	chr6	159270174	159270175	rs144235619	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	6q25.3	C6orf99	rs144235619-G	0.030538730691071	9E-6	(G_Ruminococcus_HB)	0.904733	[0.5-1.3] unit decrease	Illumina [7711310] (imputed)	N
1800	chr6	159314932	159314933	rs57043326	27622933	Li QS	2016-09-13	Transl Psychiatry	Analysis of 23andMe antidepressant efficacy survey data: implication of circadian rhythm and neuroplasticity in bupropion response.	Non-response to antidepressants and depression	1,311 European ancestry non-responder cases, 192,178 European ancestry healthy controls	NA	6q25.3	C6orf99	rs57043326-?		8E-7		2.65252	[1.69-4.17]	Illumina [~ 12000000] (imputed)	N
1800	chr6	159331259	159331260	rs78995442	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	6q25.3	NR	rs78995442-?	NR	5E-6	(AA)	0.6532	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1800	chr6	159334124	159334125	rs9457515	25920553	Coleman C	2015-04-29	Eur J Hum Genet	Common polygenic variation in coeliac disease and confirmation of ZNF335 and NIFA as disease susceptibility loci.	Celiac disease	425 Irish ancestry cases, 453 Irish ancestry controls	11,812 European ancestry cases, 229 Indian ancestry cases, 11,837 European ancestry controls, 391 Indian ancestry controls	6q25.3	RSPH3, TAGAP	rs9457515-?	NR	3E-8		0.1912	unit decrease	Illumina [up to 143074]	N
1800	chr6	159335250	159335251	rs9457516	25575512	Lu W	2015-01-09	Hum Mol Genet	Evidence for several independent genetic variants affecting lipoprotein (a) cholesterol levels.	Lipoprotein (a) - cholesterol levels	1,376 Old Order Amish individuals	NA	6q25.3	intergenic	rs9457516-?	NR	6E-9				Affymetrix [~ 2500000] (imputed)	N
1800	chr6	159354144	159354145	rs115196122	32066700	Zhang R	2020-02-05	Transl Psychiatry	Genome-wide study of immune biomarkers in cerebrospinal fluid and serum from patients with bipolar disorder and controls.	Serum immune biomarker levels	184 Scandinavian ancestry bipolar disorder cases, 107 Scandinavian ancestry controls	NA	6q25.3	intergenic	rs115196122-A	0.983	4E-8	(YKL-40)	41.511	NR unit decrease	Affymetrix, Illumina [> 5000000] (imputed)	N
1800	chr6	159368523	159368524	rs12216499	24662972	Figueroa JD	2014-03-24	Carcinogenesis	Genome-wide interaction study of smoking and bladder cancer risk.	Bladder cancer (smoking interaction)	560 European ancestry never smoker cases, 2,442 European ancestry ever smoker cases, 1,406 European ancestry never smoker controls, 3,005 European ancestry ever smoker controls	494 European ancestry never smoker cases, 1,927 European ancestry ever smoker cases, 2,257 European ancestry never smoker controls, 3,490 European ancestry ever smoker controls	6q25.3	TAGAP, RSPH3, EZR	rs12216499-?	NR	1E-6	(additive, prospective analysis)			Illumina [491011]	N
1801	chr6	159384223	159384224	rs183882582	32279069	Rovira P	2020-04-12	Neuropsychopharmacology	Shared genetic background between children and adults with attention deficit/hyperactivity disorder.	Attention deficit hyperactivity disorder	17,149 European ancestry cases, 32,411 European ancestry controls	NA	6q25.3	RSPH3	rs183882582-T	0.98	2E-8		1.43	[1.26-1.60]	Illumina [~ 1092418] (imputed)	N
1801	chr6	159416443	159416444	rs2092540	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	6q25.3	RSPH3	rs2092540-?	NR	9E-6	(Hispanic)	1.369863	[1.19-1.59]	Illumina [at least 5000000] (imputed)	N
1801	chr6	159423886	159423887	rs3127178	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Prepulse inhibition of the startle response	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	6q25.3	RSPH3	rs3127178-G	NR	3E-6		5.341853	[3.04-7.65] unit decrease	Illumina [> 6200000] (imputed)	N
1801	chr6	159427956	159427957	rs12660891	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	154,355 East Asian ancestry individuals	NA	6q25.3		rs12660891-T	0.512613	1E-10		0.0217729	[0.015-0.028] unit increase	Illumina [13479091] (imputed)	N
1801	chr6	159432565	159432566	rs17830011	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		AL035530.2	rs17830011-?	NR	1E-8	(female)	1.65804	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1801	chr6	159432565	159432566	rs17830011	25575512	Lu W	2015-01-09	Hum Mol Genet	Evidence for several independent genetic variants affecting lipoprotein (a) cholesterol levels.	Lipoprotein (a) - cholesterol levels	1,376 Old Order Amish individuals	NA		intergenic	rs17830011-?	NR	5E-9				Affymetrix [~ 2500000] (imputed)	N
1801	chr6	159432658	159432659	rs6936325	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	6q25.3		rs6936325-A	NR	1E-9		0.047	[0.032-0.062] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
1801	chr6	159432658	159432659	rs6936325	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6q25.3	RP1-111C20.4	rs6936325-A	0.024456	2E-12		0.05026032	[0.036-0.064] unit decrease	Affymetrix [93095623] (imputed)	N
1801	chr6	159432658	159432659	rs6936325	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q25.3	NR	rs6936325-A	0.0327952	3E-10				Affymetrix, Illumina [23472807] (imputed)	N
1801	chr6	159432658	159432659	rs6936325	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	6q25.3	NR	rs6936325-A	0.024681	2E-13		0.044824	[0.033-0.057] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1801	chr6	159453812	159453813	rs3117148	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs3117148-A	NR	2E-9		0.0178	[0.012-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
1801	chr6	159463451	159463452	rs926657	26377243	Li J	2015-09-17	J Hum Genet	Genome- and exome-wide association study of serum lipoprotein (a) in the Jackson Heart Study.	Lipoprotein (a) levels	2,895 African American individuals	NA	6q25.3	C6orf99, RSPH3, TAGAP, FNDC1, SOD2, PNLDC1, MAS1, IGF2R	rs926657-T	0.42	5E-11		0.14	[0.1-0.18] unit increase	Affymetrix [up to 38000000] (imputed)	N
1801	chr6	159463451	159463452	rs926657	25575512	Lu W	2015-01-09	Hum Mol Genet	Evidence for several independent genetic variants affecting lipoprotein (a) cholesterol levels.	Lipoprotein (a) - cholesterol levels	1,376 Old Order Amish individuals	NA	6q25.3	TAGAP	rs926657-?	NR	5E-9				Affymetrix [~ 2500000] (imputed)	N
1801	chr6	159463604	159463605	rs75290071	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	6q25.3		rs75290071-G	NR	2E-16		0.0364	[0.028-0.045] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
1801	chr6	159463604	159463605	rs75290071	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6q25.3	RP1-111C20.4	rs75290071-G	0.0714320000000001	4E-9		0.026608137	[0.018-0.035] unit increase	Affymetrix [93095623] (imputed)	N
1801	chr6	159463604	159463605	rs75290071	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	6q25.3	RP1-111C20.4	rs75290071-G	0.071395	4E-11		0.029833816	[0.021-0.039] unit increase	Affymetrix [93095623] (imputed)	N
1801	chr6	159465976	159465977	rs1738074	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q25.3	NR	rs1738074-C	0.50973	5E-30				Affymetrix, Illumina [24649327] (imputed)	N
1801	chr6	159465976	159465977	rs1738074	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	6q25.3	NR	rs1738074-C	0.567796	4E-28		0.020403	[0.017-0.024] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1801	chr6	159465976	159465977	rs1738074	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	6q25.3	TAGAP	rs1738074-C	NR	3E-35		1.1327595	NR	Affymetrix, Illumina [8278136] (imputed)	N
1801	chr6	159465976	159465977	rs1738074	22190364	Patsopoulos NA	2011-12-01	Ann Neurol	Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.	Multiple sclerosis	5,545 European ancestry cases, 12,153 European ancestry controls	NA	6q25.3	TAGAP	rs1738074-C	0.58	4E-7		1.15	[NR]	Affymetrix, Illumina [2529394]	N
1801	chr6	159465976	159465977	rs1738074	21833088	Sawcer S	2011-08-11	Nature	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	6q25.3	TAGAP	rs1738074-G	NR	7E-15		1.13	[1.12-1.15]	Illumina [465434]	N
1801	chr6	159465976	159465977	rs1738074	20190752	Dubois PC	2010-02-28	Nat Genet	Multiple common variants for celiac disease influencing immune gene expression.	Celiac disease	4,533 European ancestry cases, 10,750 European ancestry controls	4,918 European ancestry cases, 5,684 European ancestry controls	6q25.3	TAGAP	rs1738074-A	0.43	3E-15		1.16	[1.12-1.21]	Illumina [292387]	N
1801	chr6	159465976	159465977	rs1738074	18311140	Hunt KA	2008-03-02	Nat Genet	Newly identified genetic risk variants for celiac disease related to the immune response.	Celiac disease	767 European ancestry cases, 1,422 European ancestry controls	1,643 European ancestry cases, 3,406 European ancestry controls	6q25.3	TAGAP	rs1738074-A	NR	7E-8		1.21	[1.13-1.30]	Illumina [310605]	N
1801	chr6	159468463	159468465	rs5881307	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6q25.3	RP1-111C20.4	rs5881307-C	0.564771	7E-12		0.015982177	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1801	chr6	159468564	159468565	rs212411	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	6q25.3		rs212411-?	NR	2E-7				NR [~ 8900000] (imputed)	N
1801	chr6	159469511	159469512	rs1054091	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	6q25.3		rs1054091-C	NR	5E-15		0.0187	[0.014-0.023] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
1801	chr6	159469511	159469512	rs1054091	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	6q25.3		rs1054091-?	NR	2E-18				NR [~ 8900000] (imputed)	N
1801	chr6	159469573	159469574	rs182429	22057235	Trynka G	2011-11-06	Nat Genet	Dense genotyping identifies and localizes multiple common and rare variant association signals in celiac disease.	Celiac disease	11,812 European ancestry cases, 229 Indian ancestry cases, 11,837 European ancestry controls, 391 Indian ancestry controls	NA	6q25.3	TAGAP	rs182429-A	0.427	9E-16		1.16		Illumina [139553]	N
1801	chr6	159470057	159470058	rs212409	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	6q25.3	RP1-111C20.4	rs212409-A	0.552712	1E-10		0.014365586	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
1801	chr6	159470057	159470058	rs212409	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	6q25.3	RP1-111C20.4	rs212409-A	0.552752	2E-13		0.01719167	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1801	chr6	159470057	159470058	rs212409	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q25.3	NR	rs212409-A	0.517527	1E-27				Affymetrix, Illumina [23114412] (imputed)	N
1801	chr6	159470057	159470058	rs212409	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	6q25.3	NR	rs212409-A	0.554194	5E-28		0.021224	[0.017-0.025] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
1801	chr6	159470057	159470058	rs212409	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	6q25.3	RP1-111C20.4	rs212409-A	0.5531	2E-12		0.02549393	[0.018-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1801	chr6	159470057	159470058	rs212409	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	6q25.3	RP1-111C20.4	rs212409-A	0.5529	3E-12		0.02529899	[0.018-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1801	chr6	159470057	159470058	rs212409	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	6q25.3	RP1-111C20.4	rs212409-A	0.5529	2E-12		0.02546645	[0.018-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1801	chr6	159470241	159470242	rs212408	34127860	Robertson CC	2021-06-14	Nat Genet	Fine-mapping, trans-ancestral and genomic analyses identify causal variants, cells, genes and drug targets for type 1 diabetes.	Type 1 diabetes	20,065 European ancestry cases, 33,065 European ancestry controls, 1,045 other-admixed ancestry cases, 1,103 other-admixed ancestry controls, 1,043 African ancestry cases, 3,206 African ancestry controls	NA	6q25.3	TAGAP	rs212408-T	0.638	1E-15		1.112		Illumina [715631] (imputed)	N
1801	chr6	159470241	159470242	rs212408	34127860	Robertson CC	2021-06-14	Nat Genet	Fine-mapping, trans-ancestral and genomic analyses identify causal variants, cells, genes and drug targets for type 1 diabetes.	Type 1 diabetes	20,065 European ancestry cases, 33,065 European ancestry controls, 1,045 other-admixed ancestry cases, 1,103 other-admixed ancestry controls, 1,043 African ancestry cases, 3,206 African ancestry controls	NA	6q25.3	TAGAP	rs212408-T	0.638	1E-15		1.112		Illumina [715631] (imputed)	N
1801	chr6	159470241	159470242	rs212408	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	6q25.3		rs212408-?	NR	6E-10				NR [~ 8900000] (imputed)	N
1801	chr6	159470416	159470417	rs212407	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Celiac disease	11,489 European ancestry cases, 22,308 European ancestry controls	NA	6q25.3	TAGAP	rs212407-G		1E-11		1.1342878		Illumina [252970]	N
1801	chr6	159470416	159470417	rs212407	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Autoimmune traits (pleiotropy)	11,489 European ancestry cases with celiac disease, 15,523 European ancestry cases with rheumatoid arthritis, 3,477 European ancestry cases with systemic sclerosis, 6,670 European ancestry cases with type 1 diabetes, 22,308 European ancestry controls	NA	6q25.3	TAGAP	rs212407-G	NA	7E-14				Illumina [252970]	N
1801	chr6	159470416	159470417	rs212407	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	6q25.3	TAGAP	rs212407-?	NR	2E-6		1.098901	[1.05-1.14]	Illumina [at least 5000000] (imputed)	N
1801	chr6	159470558	159470559	rs212405	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	6q25.3	TAGAP	rs212405-T	0.64	8E-21		1.12		Illumina [161311]	N
1801	chr6	159472294	159472295	rs212402	24999842	Garner C	2014-07-07	PLoS One	Genome-wide association study of celiac disease in North America confirms FRMD4B as new celiac locus.	Celiac disease	1,550 European ancestry cases, 3,084 European ancestry controls	NA	6q25.3	TAGAP	rs212402-?		8E-9		1.31	[1.20-1.44]	Illumina [517345]	N
1801	chr6	159472681	159472682	rs212401	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	6q25.3	RP1-111C20.4	rs212401-G	0.683523	4E-10		0.014893719	[0.01-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1801	chr6	159473573	159473574	rs212400	26546613	Gutierrez-Achury J	2016-01-01	Hum Mol Genet	Functional implications of disease-specific variants in loci jointly associated with coeliac disease and rheumatoid arthritis.	Celiac disease and Rheumatoid arthritis	371 South Asian ancestry celiac disease cases, 3,138 European ancestry celiac disease cases,  4,418 European ancestry rheumatoid arthritis cases,  509 South Asian ancestry celiac disease controls, 2,473 European ancestry celiac disease controls, 3,300 European ancestry rheumatoid arthritis controls, 8,872 celiac disease cases, 9,401 rheumatoid arthritis cases, 4,845 celiac disease controls, 9,627 rheumatoid arthritis controls	NA	6q25.3	TAGAP, FNDC1	rs212400-?	NR	6E-11		1.1		Illumina [109572]	N
1801	chr6	159476627	159476628	rs114561596	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	6q25.3	intergenic	rs114561596-A	NR	9E-8	(AA)			Illumina [up to 11995908] (imputed)	N
1801	chr6	159476627	159476628	rs114561596	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	6q25.3	intergenic	rs114561596-A	NR	9E-8				Illumina [up to 11995908] (imputed)	N
1801	chr6	159482821	159482822	rs77400774	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	6q25.3	TAGAP	rs77400774-A	0.0118395228998043	9E-6	(G_Coprococcus_HB)	1.35024	[0.75-1.95] unit decrease	Illumina [7711310] (imputed)	N
1801	chr6	159489790	159489791	rs212389	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Crohn's disease vs rheumatoid arthritis (ordinary least squares (OLS))	5,956 Crohn's disease cases, 8,875 rheumatoid arthritis cases	14,594 Crohn's disease cases, 5,486 rheumatoid arthritis cases	6q25.3		rs212389-?	NR	6E-11		0.054	NR unit decrease	NR [5890016] (imputed)	N
1801	chr6	159489790	159489791	rs212389	33310728	Ha E	2020-12-11	Ann Rheum Dis	Large-scale meta-analysis across East Asian and European populations updated genetic architecture and variant-driven biology of rheumatoid arthritis, identifying 11 novel susceptibility loci.	Rheumatoid arthritis	14,361 European ancestry cases, 43,923 European ancestry controls, 8,267 East Asian ancestry cases, 244,741 East Asian ancestry controls	NA	6q25.3		rs212389-A	NR	7E-13		1.11	[1.08-1.14]	NR [13810676] (imputed)	N
1801	chr6	159489790	159489791	rs212389	24532676	Kim K	2014-02-14	Ann Rheum Dis	High-density genotyping of immune loci in Koreans and Europeans identifies eight new rheumatoid arthritis risk loci.	Rheumatoid arthritis (ACPA-positive)	2,234 Korean ancestry cases, 7,065 Korean ancestry controls, 10,288 European ancestry cases, 35,502 European ancestry controls	NA	6q25.3	TAGAP	rs212389-A	0.62	1E-10		1.1235955	[1.08-1.16]	Illumina [133816] (imputed)	N
1801	chr6	159489790	159489791	rs212389	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis (ACPA-positive)	up to 9,585 European ancestry cases, up to 33,742 European ancestry controls	NA	6q25.3	TAGAP	rs212389-?	NR	9E-9				Illumina [129464] (imputed)	N
1801	chr6	159490435	159490436	rs212388	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	6q25.3	Intergenic	rs212388-?		1E-10				Illumina [9560910] (imputed)	N
1801	chr6	159490435	159490436	rs212388	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	6q25.3	NR	rs212388-G	0.3957	2E-7	(EA)	1.0551589	[1.03-1.08]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1801	chr6	159490435	159490436	rs212388	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	6q25.3	NR	rs212388-G	0.3957	2E-16	(EA)	1.1078008	[1.08-1.13]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1801	chr6	159490435	159490436	rs212388	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Crohn's disease	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls	6q25.3	TAGAP	rs212388-C	0.41	3E-14		1.105	[1.069-1.141]	Affymetrix, Illumina [1230000] (imputed)	N
1801	chr6	159490435	159490436	rs212388	21298027	Festen EA	2011-01-27	PLoS Genet	A meta-analysis of genome-wide association scans identifies IL18RAP, PTPN2, TAGAP, and PUS10 as shared risk loci for Crohn's disease and celiac disease.	Crohn's disease and celiac disease	3,230 European ancestry Crohn's disease cases, 768 European ancestry celiac disease cases, 6,251 European ancestry controls	1,835 European ancestry Crohn's disease cases, 3,149 European ancestry celiac disease cases, 6,383 European ancestry controls	6q25.3	TAGAP	rs212388-C	NR	2E-10	(combined)			Affymetrix, Illumina [471504]	N
1801	chr6	159490435	159490436	rs212388	21102463	Franke A	2010-11-21	Nat Genet	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry trios	6q25.3	TAGAP	rs212388-G	0.393	2E-11		1.1	[1.05-1.14]	Affymetrix, Illumina [953241] (imputed)	N
1801	chr6	159496712	159496713	rs629326	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis (ACPA-positive)	up to 9,585 European ancestry cases, up to 33,742 European ancestry controls	NA	6q25.3	TAGAP	rs629326-?	0.67	1E-6		1.111976		Illumina [129464] (imputed)	N
1801	chr6	159498266	159498267	rs1107943	22057235	Trynka G	2011-11-06	Nat Genet	Dense genotyping identifies and localizes multiple common and rare variant association signals in celiac disease.	Celiac disease	11,812 European ancestry cases, 229 Indian ancestry cases, 11,837 European ancestry controls, 391 Indian ancestry controls	NA	6q25.3	TAGAP	rs1107943-?	0.071	3E-6	(conditioned on rs182429)	1.18		Illumina [139553]	N
1801	chr6	159506599	159506600	rs2451258	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	6q25.3	TAGAP	rs2451258-T	NR	6E-11		0.115559	[0.056-0.175] unit increase	Illumina [8380626] (imputed)	N
1801	chr6	159506599	159506600	rs2451258	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	6q25.3	TAGAP	rs2451258-T	0.64	6E-10	(EA)	0.10104	[0.069-0.133] unit increase	Illumina [8380626] (imputed)	N
1801	chr6	159506599	159506600	rs2451258	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	6q25.3	intergenic	rs2451258-?	NR	5E-17	(subset analysis)			Illumina [130052]	N
1801	chr6	159506599	159506600	rs2451258	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	6q25.3	TAGAP	rs2451258-T	0.74	3E-11		1.1	[1.07-1.14]	Affymetrix, Illumina [up to 9739303] (imputed)	N
1801	chr6	159506599	159506600	rs2451258	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	6q25.3	TAGAP	rs2451258-T	0.64	2E-10	(EA)	1.1	[1.07-1.13]	Affymetrix, Illumina [up to 9739303] (imputed)	N
1801	chr6	159506599	159506600	rs2451258	23143594	Tsoi LC	2012-12-01	Nat Genet	Identification of 15 new psoriasis susceptibility loci highlights the role of innate immunity.	Psoriasis	10,588 European ancestry cases, 22,806 European ancestry controls	NA	6q25.3	TAGAP	rs2451258-C	0.348	3E-8		1.12		Illumina [111236] (imputed)	N
1802	chr6	159514859	159514860	rs3120630	25920553	Coleman C	2015-04-29	Eur J Hum Genet	Common polygenic variation in coeliac disease and confirmation of ZNF335 and NIFA as disease susceptibility loci.	Celiac disease	425 Irish ancestry cases, 453 Irish ancestry controls	11,812 European ancestry cases, 229 Indian ancestry cases, 11,837 European ancestry controls, 391 Indian ancestry controls	6q25.3	RSPH3, TAGAP	rs3120630-?	NR	2E-8		0.1411	unit decrease	Illumina [up to 143074]	N
1802	chr6	159515076	159515077	rs2451279	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	6q25.3	intergenic	rs2451279-G	0.6179	4E-12		0.02611341	[0.019-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1802	chr6	159515076	159515077	rs2451279	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	6q25.3	intergenic	rs2451279-G	0.6179	2E-12		0.02636221	[0.019-0.034] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1802	chr6	159515076	159515077	rs2451279	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	6q25.3	intergenic	rs2451279-G	0.618	8E-12		0.02576397	[0.018-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1802	chr6	159515308	159515309	rs2249937	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Psoriasis vulgaris	5,072 European ancestry cases, 478,102 European ancestry controls, 206 East Asian ancestry cases, 172,289 East Asian ancestry controls	NA	6q25.3		rs2249937-G	NR	1E-11		0.158	[0.11-0.2] unit decrease	Affymetrix, Illumina [25844455] (imputed)	N
1802	chr6	159520297	159520298	rs73799847	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels	3,806 African American individuals	NA	6q25.3		rs73799847-?	NR	1E-6		0.2	[0.12-0.28] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1802	chr6	159524621	159524622	rs9355260	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	6q25.3	TAGAP, FNDC1	rs9355260-A	0.18	6E-7		1.08	[1.05-1.11]	Illumina [161311]	N
1802	chr6	159527810	159527811	rs9457549	30287806	Zhou H	2018-10-04	Transl Psychiatry	Genome-wide association study identifies glutamate ionotropic receptor GRIA4 as a risk gene for comorbid nicotine dependence and major depression.	Nicotine dependence and major depression (severity of comorbidity)	3,724 African American individuals	NA	6q25.3	Intergenic	rs9457549-G	0.059	9E-6		1.2143	[0.68-1.75] unit increase	Illumina [9520174] (imputed)	N
1802	chr6	159609573	159609573	rs376851284	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		FNDC1	rs376851284-?	NR	4E-8	(female)	1.34592	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1802	chr6	159621086	159621087	rs62432291	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Joint mobility (Beighton score)	64,143 European ancestry individuals	NA	6q25.3	FNDC1	rs62432291-?	NR	1E-12		0.177	[0.226-0.128] unit decrease	Illumina [12039492] (imputed)	N
1802	chr6	159629044	159629045	rs294914	25575512	Lu W	2015-01-09	Hum Mol Genet	Evidence for several independent genetic variants affecting lipoprotein (a) cholesterol levels.	Lipoprotein (a) - cholesterol levels	1,376 Old Order Amish individuals	NA	6q25.3	FNDC1	rs294914-?	NR	2E-11				Affymetrix [~ 2500000] (imputed)	N
1802	chr6	159639883	159639884	rs371417	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	6q25.3	FNDC1	rs371417-A	0.5843	4E-14		0.1908	[0.14-0.24] mmHg decrease	Affymetrix [NR] (imputed)	N
1803	chr6	159646332	159646333	rs365302	21606135	Wild PS	2011-05-23	Circ Cardiovasc Genet	A genome-wide association study identifies LIPA as a susceptibility gene for coronary artery disease.	Coronary heart disease	2,078 European ancestry cases, 2,953 European ancestry controls	19,350 European ancestry cases, 35,408 European ancestry controls	6q25.3	FNDC1	rs365302-C	0.24	8E-7		1.11	[1.06-1.15]	Affymetrix [608247]	N
1803	chr6	159653329	159653330	rs117860656	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs117860656-A	NR	8E-17		0.0978	[0.075-0.121] unit decrease	Affymetrix [9000000] (imputed)	N
1803	chr6	159654029	159654030	rs73023729	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-4 levels	8,124 Finnish ancestry individuals	NA	6q25.3	NR	rs73023729-G		9E-7		0.1796	[0.11-0.25] SD units increase	NR [10700000] (imputed)	N
1803	chr6	159655515	159655516	rs77131924	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs77131924-C	NR	5E-18		0.0417	[0.032-0.051] unit increase	Affymetrix [9000000] (imputed)	N
1803	chr6	159682205	159682206	rs294883	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	6q25.3	FNDC1	rs294883-T	0.707	5E-6		0.032	[0.018-0.046] unit decrease	Affymetrix [7947838] (imputed)	N
1803	chr6	159691656	159691657	rs389546	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	6q25.3		rs389546-C	NR	2E-10		0.0206	[0.014-0.027] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1803	chr6	159693219	159693220	rs434578	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	6q25.3		rs434578-?	NR	1E-15				NR [~ 8900000] (imputed)	N
1803	chr6	159696184	159696185	rs516143	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	6q25.3		rs516143-C	NR	6E-29		0.034	[0.028-0.04] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
1803	chr6	159696184	159696185	rs516143	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	6q25.3	FNDC1, SOD2	rs516143-G		1E-16		0.314	unit increase	Affymetrix [at least 2696785] (imputed)	N
1803	chr6	159699124	159699125	rs449789	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Pulse pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	6q25.3	FNDC1	rs449789-C	0.14	2E-15		0.359	[0.26-0.46] unit increase	Affymetrix [~ 9800000] (imputed)	N
1803	chr6	159749584	159749585	rs73027919	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs73027919-T	NR	3E-21		0.0666	[0.053-0.08] unit decrease	Affymetrix [9000000] (imputed)	N
1804	chr6	159785532	159785533	rs9365050	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	6q25.3		rs9365050-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1804	chr6	159801023	159801024	rs1544167	25575512	Lu W	2015-01-09	Hum Mol Genet	Evidence for several independent genetic variants affecting lipoprotein (a) cholesterol levels.	Lipoprotein (a) - cholesterol levels	1,376 Old Order Amish individuals	NA	6q25.3	intergenic	rs1544167-?	NR	4E-10				Affymetrix [~ 2500000] (imputed)	N
1804	chr6	159828375	159828376	rs147936643	29678681	Matana A	2018-04-18	Genomics	Genome-wide meta-analysis identifies novel gender specific loci associated with thyroid antibodies level in Croatians.	Plasma anti-thyroglobulin and anti-thyroid peroxidase levels (bivariate analysis)	up to 1,596 Croatian ancestry women, up to 1,033 Croatian ancestry men	NA	6q25.3	SOD2	rs147936643-?	NR	4E-6		0.011	[0.0061-0.0159] unit increase	Illumina [5527232] (imputed)	N
1804	chr6	159839063	159839064	rs141117870	33730874	Said MA	2021-03-18	Arterioscler Thromb Vasc Biol	Genome-Wide Association Study and Identification of a Protective Missense Variant on Lipoprotein(a) Concentration: Protective Missense Variant on Lipoprotein(a) Concentration.	Lipoprotein (a) levels	348,591 European ancestry individuals, 6,000 African ancestry individuals, 9,116 Asian ancestry individuals, 7,505 individuals		6q25.3	FNDC1	rs141117870-C	NR	1E-93		0.11811	[0.11-0.13] nmol/l decrease	NR [19000000] (imputed)	N
1804	chr6	159857838	159857839	rs117332585	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs117332585-T	NR	9E-75		0.1651	[0.15-0.18] unit increase	Affymetrix [9000000] (imputed)	N
1804	chr6	159862260	159862261	rs4709323	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs4709323-G	NR	1E-10		0.0189	[0.013-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
1804	chr6	159890448	159890449	rs6914036	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6q25.3	FNDC1	rs6914036-G	0.750813	3E-8	(34 ms)	0.0355296	[0.023-0.048] unit decrease	Affymetrix [10000000] (imputed)	N
1804	chr6	159893936	159893937	rs4708832	27659466	van der Harst P	2016-09-27	J Am Coll Cardiol	52 Genetic Loci Influencing Myocardial Mass.	QRS duration	59,565 European ancestry individuals, 690 Orcadian (founder/genetic isolate) individuals	13,263 European ancestry individuals, 3,603 African American individuals, 4,619 Indian ancestry individuals	6q25.3	NR	rs4708832-?	NR	2E-8	(EA)			Affymetrix, Illumina, Perlegen [at least 2766983] (imputed)	N
1804	chr6	159898260	159898261	rs17186366	32289280	Zhang Y	2020-04-11	Am J Obstet Gynecol	A genome-wide association study of polycystic ovary syndrome identified from electronic health records.	Polycystic ovary syndrome	1,735 European ancestry cases, 1,007 European, African American and unknown ancestry cases, 27,812 European ancestry controls, 23,626 European, African American and unknown ancestry controls	253 European ancestry cases, 2,161 European ancestry controls	6q25.3	SOD2	rs17186366-C	0.084	3E-8		1.37	[1.23-1.54]	NR [at least 5648769] (imputed)	N
1804	chr6	159904592	159904593	rs62438466	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs62438466-T	NR	3E-11		0.0288	[0.02-0.037] unit increase	Affymetrix [9000000] (imputed)	N
1805	chr6	159914753	159914754	rs434558	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	6q25.3	NR	rs434558-?	NR	1E-35				Affymetrix [NR]	N
1805	chr6	159930565	159930566	rs73017450	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs73017450-T	NR	6E-27		0.0451	[0.037-0.053] unit decrease	Affymetrix [9000000] (imputed)	N
1805	chr6	159951924	159951925	rs4709347	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs4709347-T	NR	6E-28		0.0361	[0.03-0.043] unit increase	Affymetrix [9000000] (imputed)	N
1805	chr6	159953547	159953548	rs413634	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Oscillospira)	541 Japanese ancestry women	NA	6q25.3	intergenic	rs413634-C	0.06	9E-6		0.0599	[0.034-0.086] unit decrease	Illumina [545605]	N
1805	chr6	159953675	159953676	rs57175128	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	6q25.3		rs57175128-T	0.985753	1E-8		0.103619	[0.068-0.139] unit increase	NR [11722792] (imputed)	N
1805	chr6	159953675	159953676	rs57175128	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6q25.3		rs57175128-T	0.985774	2E-9		0.10334	[0.069-0.137] unit increase	NR [11722792] (imputed)	N
1805	chr6	159953675	159953676	rs57175128	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	6q25.3		rs57175128-T	0.985753	4E-9		0.105433	[0.07-0.141] unit decrease	NR [11722792] (imputed)	N
1805	chr6	159953675	159953676	rs57175128	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	6q25.3		rs57175128-T	0.985753	5E-9		0.105202	[0.07-0.141] unit decrease	NR [11722792] (imputed)	N
1805	chr6	159958834	159958835	rs12191504	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	6q25.3	LPA	rs12191504-?	NR	3E-8		0.0152	[0.01-0.02] unit increase	Affymetrix [5701386] (imputed)	N
1805	chr6	159961186	159961187	rs60227172	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs60227172-C	NR	2E-11		0.0485	[0.034-0.063] unit decrease	Affymetrix [9000000] (imputed)	N
1805	chr6	159962228	159962229	rs111867376	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs111867376-A	NR	6E-11		0.0462	[0.032-0.06] unit increase	Affymetrix [9000000] (imputed)	N
1805	chr6	159972471	159972472	rs62438514	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs non-severe)	86 Finnish ancestry male severe erosion cases, 50 Finnish ancestry female severe erosion cases, 817 Finnish ancestry male non-severe erosion controls, 991 Finnish ancestry female non-severe erosion controls	NA	6q25.3	SOD2, ACAT2, WTAP	rs62438514-?	NR	3E-8	(female)	4.4	[2.00-9.47]	Illumina [NR] (imputed)	N
1805	chr6	160026360	160026361	rs118170026	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs118170026-G	NR	4E-19		0.1206	[0.094-0.147] unit increase	Affymetrix [9000000] (imputed)	N
1805	chr6	160032983	160032984	rs73020718	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs73020718-G	NR	1E-195		0.2537	[0.24-0.27] unit increase	Affymetrix [9000000] (imputed)	N
1806	chr6	160071158	160071159	rs2842992	22705344	Sobrin L	2012-06-15	Ophthalmology	Heritability and genome-wide association study to assess genetic differences between advanced age-related macular degeneration subtypes.	Age-related macular degeneration (geographic atrophy)	819 European ancestry geographic atrophy cases, 4,134 European ancestry controls	NA	6q25.3	SOD2	rs2842992-?	0.203	3E-7		1.43	[1.25-1.64]	Affymetrix, Illumina [6036699] (imputed)	N
1806	chr6	160091835	160091836	rs71565748	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	6q25.3		rs71565748-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1806	chr6	160099975	160099976	rs112527025	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs112527025-C	NR	2E-46		0.1266	[0.11-0.14] unit decrease	Affymetrix [9000000] (imputed)	N
1806	chr6	160115453	160115454	rs5746081	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs5746081-A	NR	6E-36		0.0879	[0.074-0.102] unit decrease	Affymetrix [9000000] (imputed)	N
1806	chr6	160120798	160120799	rs6912979	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Age at menopause	approximately 143,000 European ancestry individuals	NA	6q25.3		rs6912979-?	NR	8E-8				NR [~ 8900000] (imputed)	N
1806	chr6	160122300	160122301	rs80065806	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs80065806-A	NR	2E-20		0.0573	[0.045-0.069] unit increase	Affymetrix [9000000] (imputed)	N
1806	chr6	160137686	160137687	rs4516970	19084217	Benyamin B	2008-12-17	Am J Hum Genet	Variants in TF and HFE explain approximately 40% of genetic variation in serum-transferrin levels.	Iron status biomarkers	459 European ancestry twin pairs	NA	6q25.3	WTAP	rs4516970-?	NR	1E-6	(serum ferritin)			Illumina [315887]	N
1806	chr6	160148347	160148348	rs11752345	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Prostate cancer	10,792 European ancestry cases, 410,350 European ancestry controls	NA	6q25.3		rs11752345-T	NR	1E-7		1.0968521	NR	Affymetrix [7846216] (imputed)	N
1806	chr6	160149178	160149179	rs78550031	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs78550031-C	NR	2E-42		0.0837	[0.072-0.096] unit decrease	Affymetrix [9000000] (imputed)	N
1806	chr6	160150278	160150279	rs963800	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	6q25.3	NR	rs963800-C	NR	3E-16		1.064	[1.05-1.08]	Affymetrix, Illumina [29235255] (imputed)	N
1806	chr6	160150278	160150279	rs963800	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	8,611 East Asian ancestry cases, 18,809 East Asian ancestry controls	NA	6q25.3	NR	rs963800-C	0.599	6E-6		1.087	[1.05-1.13]	Affymetrix, Illumina [10186136] (imputed)	N
1806	chr6	160156943	160156944	rs117466922	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs117466922-G	NR	3E-26		0.0867	[0.071-0.103] unit increase	Affymetrix [9000000] (imputed)	N
1806	chr6	160166889	160166890	rs763561	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs763561-G	NR	9E-10		0.084	[0.057-0.111] unit increase	Affymetrix [9000000] (imputed)	N
1807	chr6	160179779	160179780	rs75374960	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs75374960-C	NR	8E-32		0.0816	[0.068-0.095] unit decrease	Affymetrix [9000000] (imputed)	N
1807	chr6	160185150	160185151	rs5015801	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	6q25.3		rs5015801-A	0.982074	8E-9		0.096073	[0.063-0.129] unit decrease	NR [11722792] (imputed)	N
1807	chr6	160185150	160185151	rs5015801	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	6q25.3		rs5015801-A	0.982074	3E-10		0.104784	[0.072-0.137] unit increase	NR [11722792] (imputed)	N
1807	chr6	160191236	160191237	rs71565752	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs71565752-A	NR	4E-35		0.1048	[0.088-0.121] unit increase	Affymetrix [9000000] (imputed)	N
1807	chr6	160195049	160195050	rs754054303	30108283	Granot-Hershkovitz E	2018-08-14	Eur J Hum Genet	A study of Kibbutzim in Israel reveals risk factors for cardiometabolic traits and subtle population structure.	Lipoprotein (a) levels	733 Ashkenazi Jewish ancestry individuals (founder/population isolate), 168 Sephardi Jewish, North African Jewish, Middle Eastern, Caucasian and Yemenite Jewish individuals	NA	6q25.3	ACAT2	rs754054303-G	NR	1E-6		0.76	[0.45-1.07] unit decrease	Illumina [212505] (imputed)	N
1807	chr6	160207844	160207845	rs35589108	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs35589108-G	NR	4E-74		0.1939	[0.17-0.21] unit decrease	Affymetrix [9000000] (imputed)	N
1807	chr6	160218442	160218443	rs146888147	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs146888147-T	NR	1E-36		0.5318	[0.45-0.61] unit increase	Affymetrix [9000000] (imputed)	N
1807	chr6	160219478	160219479	rs117938020	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs117938020-G	NR	3E-10		0.1317	[0.091-0.173] unit decrease	Affymetrix [9000000] (imputed)	N
1807	chr6	160227052	160227053	rs146392472	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs146392472-C	NR	2E-11		0.1199	[0.085-0.155] unit decrease	Affymetrix [9000000] (imputed)	N
1807	chr6	160238026	160238027	rs77632648	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs77632648-G	NR	6E-35		0.0849	[0.071-0.098] unit decrease	Affymetrix [9000000] (imputed)	N
1807	chr6	160239834	160239835	rs9347350	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs9347350-C	NR	4E-22		0.0327	[0.026-0.039] unit increase	Affymetrix [9000000] (imputed)	N
1807	chr6	160241350	160241351	rs35694841	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs35694841-C	NR	9E-34		0.0422	[0.035-0.049] unit decrease	Affymetrix [9000000] (imputed)	N
1807	chr6	160249367	160249368	rs11965350	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs11965350-G	NR	1E-11		0.0324	[0.023-0.042] unit increase	Affymetrix [9000000] (imputed)	N
1807	chr6	160261275	160261276	rs73602850	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs73602850-A	NR	5E-16		0.0815	[0.062-0.101] unit increase	Affymetrix [9000000] (imputed)	N
1807	chr6	160261362	160261363	rs12193769	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs12193769-A	NR	1E-19		0.0901	[0.071-0.11] unit increase	Affymetrix [9000000] (imputed)	N
1807	chr6	160290174	160290175	rs117094150	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Saturated fatty acid levels	115,006 European ancestry individuals	NA	6q25.3		rs117094150-T	0.983732	5E-8		0.0914624	[0.059-0.124] unit decrease	NR [11722792] (imputed)	N
1808	chr6	160301252	160301253	rs144005840	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,963 Sub-Saharan African ancestry females	NA	6q25.3		rs144005840-C	0.979864	9E-6		0.043548	[0.024-0.063] unit increase	Illumina [13900000] (imputed)	N
1808	chr6	160301488	160301489	rs73586466	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs73586466-T	NR	3E-20		0.0497	[0.039-0.06] unit increase	Affymetrix [9000000] (imputed)	N
1808	chr6	160311714	160311715	rs76077281	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs76077281-C	NR	4E-53		0.1233	[0.11-0.14] unit decrease	Affymetrix [9000000] (imputed)	N
1808	chr6	160311889	160311890	rs117859111	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	6q25.3	NR	rs117859111-A	NR	2E-10		0.0286	[0.02-0.037] unit decrease	Affymetrix [9000000] (imputed)	N
1808	chr6	160311889	160311890	rs117859111	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs117859111-A	NR	2E-24		0.0512	[0.041-0.061] unit decrease	Affymetrix [9000000] (imputed)	N
1808	chr6	160311889	160311890	rs117859111	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	6q25.3	NR	rs117859111-A	NR	6E-10		0.0279	[0.019-0.037] unit decrease	Affymetrix [9000000] (imputed)	N
1808	chr6	160322069	160322070	rs77858805	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs77858805-A	NR	3E-14		0.1304	[0.097-0.164] unit increase	Affymetrix [9000000] (imputed)	N
1808	chr6	160325988	160325989	rs220725	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs220725-G	NR	3E-10		0.0674	[0.046-0.088] unit decrease	Affymetrix [9000000] (imputed)	N
1808	chr6	160326689	160326690	rs220722	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs220722-G	NR	2E-14		0.0415	[0.031-0.052] unit increase	Affymetrix [9000000] (imputed)	N
1808	chr6	160328354	160328355	rs149100513	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs149100513-C	NR	2E-10		0.2609	[0.18-0.34] unit decrease	Affymetrix [9000000] (imputed)	N
1808	chr6	160329615	160329616	rs12216486	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IGF2R	5,361 Icelandic ancestry individuals	NA	6q25.3		rs12216486-A	0.06453	7E-11		0.248976	[0.17-0.32] unit increase	Illumina [7506463] (imputed)	N
1808	chr6	160331653	160331654	rs12207188	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs12207188-T	NR	8E-529		0.2736	[0.26-0.28] unit increase	Affymetrix [9000000] (imputed)	N
1808	chr6	160340255	160340256	rs187270959	28512139	Mack S	2017-05-16	J Lipid Res	A genome-wide association meta-analysis on lipoprotein (a) concentrations adjusted for apolipoprotein (a) isoforms.	Lipoprotein (a) levels	13,781 European ancestry individuals	NA	6q25.3	LPA	rs187270959-C		5E-11		12.38	[8.8-15.96] mg/dL increase	Affymetrix, Illumina [at least 7600000] (imputed)	N
1808	chr6	160344264	160344265	rs9365114	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs9365114-T	NR	1E-24		0.0487	[0.039-0.058] unit increase	Affymetrix [9000000] (imputed)	N
1808	chr6	160354809	160354810	rs73017544	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs73017544-A	NR	8E-24		0.0773	[0.062-0.092] unit decrease	Affymetrix [9000000] (imputed)	N
1808	chr6	160374744	160374745	rs62442661	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs62442661-G	NR	8E-28		0.0768	[0.063-0.091] unit decrease	Affymetrix [9000000] (imputed)	N
1808	chr6	160379095	160379096	rs12202350	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6q25.3	IGF2R, MAS1	rs12202350-C	0.1065327	7E-13	(EA, Cation-independent mannose-6-phosphate receptor)	0.5104	[0.37-0.65] unit increase	Affymetrix [509946]	N
1808	chr6	160379709	160379710	rs116926922	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs116926922-T	NR	2E-60		0.1127	[0.099-0.126] unit increase	Affymetrix [9000000] (imputed)	N
1808	chr6	160394190	160394191	rs3798208	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	6q25.3		rs3798208-G	0.970685	5E-8		0.0654935	[0.042-0.089] unit increase	NR [11722792] (imputed)	N
1808	chr6	160395286	160395291	rs71793166	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6q25.3	NR	rs71793166-A	0.089	3E-18	(Cation-independent mannose-6-phosphate receptor, IGF2R.3676.15.3)	0.38	[0.3-0.46] unit increase	Affymetrix [10572788] (imputed)	N
1808	chr6	160400146	160400147	rs7750288	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	6q25.3	IGF2R	rs7750288-A	0.722236	1E-17	(acisoga)	0.215	[0.17-0.26] unit increase	Illumina [13039987] (imputed)	N
1808	chr6	160400146	160400147	rs7750288	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	1,509 European ancestry individuals	6q25.3	IGF2R	rs7750288-A	0.722236	1E-17	(acisoga)	0.215	[0.17-0.26] unit increase	Illumina [13039987] (imputed)	N
1808	chr6	160400146	160400147	rs7750288	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x long total sleep time interaction (2df test)	2,913 African American long sleepers, 358 Chinese ancestry long sleepers, 110 Asian ancestry long sleepers, 7,583 European ancestry long sleepers, 1,036 Hispanic/Latino long sleepers, up to 11,862 African American controls, 1,432 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,744 European ancestry controls, 4,066 Hispanic/Latino controls	at least 214 African American long sleepers, 616 East Asian ancestry long sleepers, up to 6,657 European ancestry long sleepers, 2,457 Hispanic long sleepers, at least 913 African American controls, 2,517 East Asian ancestry controls, up to 26,868 European ancestry controls, 9,870 Hispanic controls	6q25.3	SLC22A1	rs7750288-?	NR	2E-11		1.535	[1.1-1.97] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
1808	chr6	160402704	160402705	rs6917747	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	6q25.3	NR	rs6917747-A	NR	1E-26		0.0371	[0.03-0.044] unit increase	Affymetrix [9000000] (imputed)	N
1808	chr6	160402704	160402705	rs6917747	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	6q25.3	NR	rs6917747-A	NR	1E-28		0.0386	[0.032-0.045] unit increase	Affymetrix [9000000] (imputed)	N
1808	chr6	160402704	160402705	rs6917747	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs6917747-A	NR	3E-9		0.023	[0.015-0.031] unit decrease	Affymetrix [9000000] (imputed)	N
1808	chr6	160402704	160402705	rs6917747	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	6q25.3	NR	rs6917747-A	NR	4E-15		0.0274	[0.021-0.034] unit increase	Affymetrix [9000000] (imputed)	N
1808	chr6	160402704	160402705	rs6917747	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	6q25.3	NR	rs6917747-A	NR	2E-27		0.0378	[0.031-0.045] unit increase	Affymetrix [9000000] (imputed)	N
1808	chr6	160402704	160402705	rs6917747	19010793	Baranzini SE	2008-11-14	Hum Mol Genet	Genome-wide association analysis of susceptibility and clinical phenotype in multiple sclerosis.	Brain lesion load	791 European ancestry cases, 883 European ancestry controls	NA	6q25.3	IGF2R	rs6917747-?	0.15	7E-6			[NR]	Illumina [551642]	N
1808	chr6	160408324	160408325	rs9457799	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	6q25.3	IGF2R	rs9457799-T	0.136156	5E-11		0.0200587	[0.014-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1808	chr6	160409893	160409894	rs75474551	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Citrate levels	115,068 European ancestry individuals	NA	6q25.3		rs75474551-G	0.908395	4E-10		0.0438907	[0.03-0.058] unit increase	NR [11722792] (imputed)	N
1808	chr6	160409893	160409894	rs75474551	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q25.3	NR	rs75474551-T	0.0724036	3E-10				Affymetrix, Illumina [24246363] (imputed)	N
1808	chr6	160409893	160409894	rs75474551	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	6q25.3	NR	rs75474551-T	0.092198	1E-12		0.022866	[0.017-0.029] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1808	chr6	160411746	160411747	rs9457800	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	6q25.3	IGF2R	rs9457800-T	0.135087	2E-10		0.019706182	[0.014-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1808	chr6	160411746	160411747	rs9457800	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	6q25.3		rs9457800-?	NR	9E-11				NR [~ 8900000] (imputed)	N
1808	chr6	160429356	160429357	rs8191725	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs8191725-G	NR	3E-98		0.1573	[0.14-0.17] unit increase	Affymetrix [9000000] (imputed)	N
1808	chr6	160429691	160429692	rs78277868	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	6q25.3		rs78277868-G	0.978396	3E-8		0.076833	[0.05-0.104] unit increase	NR [11722792] (imputed)	N
1809	chr6	160435928	160435929	rs3798188	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6q25.3	MAS1	rs3798188-?	NR	8E-6	(PC 38:3)	0.20887834	[0.12-0.3] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1809	chr6	160443762	160443763	rs74515649	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	6q25.3		rs74515649-C	0.984058	1E-8		0.0908876	[0.06-0.122] unit increase	NR [11722792] (imputed)	N
1809	chr6	160443762	160443763	rs74515649	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	6q25.3		rs74515649-C	0.984058	4E-8		0.087573	[0.056-0.119] unit increase	NR [11722792] (imputed)	N
1809	chr6	160448323	160448324	rs8191754	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	6q25.3	NR	rs8191754-G	NR	1E-9		0.0209	[0.014-0.028] unit decrease	Affymetrix [9000000] (imputed)	N
1809	chr6	160448323	160448324	rs8191754	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	6q25.3	NR	rs8191754-G	NR	1E-12		0.0244	[0.018-0.031] unit decrease	Affymetrix [9000000] (imputed)	N
1809	chr6	160448323	160448324	rs8191754	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs8191754-G	NR	2E-88		0.0767	[0.069-0.084] unit decrease	Affymetrix [9000000] (imputed)	N
1809	chr6	160448323	160448324	rs8191754	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	6q25.3	NR	rs8191754-G	NR	5E-13		0.0249	[0.018-0.032] unit decrease	Affymetrix [9000000] (imputed)	N
1809	chr6	160453351	160453352	rs182532458	28512139	Mack S	2017-05-16	J Lipid Res	A genome-wide association meta-analysis on lipoprotein (a) concentrations adjusted for apolipoprotein (a) isoforms.	Lipoprotein (a) levels	13,781 European ancestry individuals	NA	6q25.3	LPA	rs182532458-A		6E-6		4.36	[1.57-7.15] mg/dL increase	Affymetrix, Illumina [at least 7600000] (imputed)	N
1809	chr6	160454551	160454552	rs408889	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IGF2R	5,361 Icelandic ancestry individuals	NA	6q25.3		rs408889-A	0.3165	2E-24		0.201245	[0.16-0.24] unit increase	Illumina [7506463] (imputed)	N
1809	chr6	160459190	160459191	rs78797168	24024966	Teumer A	2013-08-14	J Clin Periodontol	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (CDC/AAP)	up to 3,915 European ancestry individuals	NA	6q25.3	IGF2R	rs78797168-A	0.93	2E-6	(Age 20-60 years)	1.75	[1.39-2.22]	Affymetrix, Illumina [up to 17585496] (imputed)	N
1809	chr6	160461333	160461334	rs8191772	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6q25.3	NR	rs8191772-?	NR	3E-6		4.654	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1809	chr6	160465290	160465291	rs688359	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	6q25.3	IGF2R	rs688359-A	0.6112	5E-15		0.0526	[0.039-0.066] unit decrease	NR [8041861] (imputed)	N
1809	chr6	160472031	160472032	rs4709393	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs4709393-G	NR	2E-24		0.0313	[0.025-0.037] unit increase	Affymetrix [9000000] (imputed)	N
1809	chr6	160472031	160472032	rs4709393	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	6q25.3	NR	rs4709393-G	NR	1E-11		0.0184	[0.013-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
1809	chr6	160476266	160476267	rs384167	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	6q25.3	IGF2R	rs384167-A	0.203006	2E-11	(serotonin)	0.189	[0.13-0.24] unit increase	Illumina [13039987] (imputed)	N
1809	chr6	160476266	160476267	rs384167	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	1,509 European ancestry individuals	6q25.3	IGF2R	rs384167-A	0.203006	2E-11	(serotonin)	0.189	[0.13-0.24] unit increase	Illumina [13039987] (imputed)	N
1809	chr6	160476944	160476945	rs3777411	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total esterified cholesterol levels	115,082 European ancestry individuals	NA	6q25.3		rs3777411-C	0.849265	2E-11		0.0373609	[0.026-0.048] unit increase	NR [11722792] (imputed)	N
1809	chr6	160476944	160476945	rs3777411	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol minus HDL-C levels	115,082 European ancestry individuals	NA	6q25.3		rs3777411-C	0.849265	3E-15		0.0453198	[0.034-0.057] unit increase	NR [11722792] (imputed)	N
1809	chr6	160476944	160476945	rs3777411	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol levels	115,082 European ancestry individuals	NA	6q25.3		rs3777411-C	0.849265	1E-12		0.0397337	[0.029-0.051] unit increase	NR [11722792] (imputed)	N
1809	chr6	160476944	160476945	rs3777411	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Remnant cholesterol (non-HDL, non-LDL -cholesterol)	115,082 European ancestry individuals	NA	6q25.3		rs3777411-C	0.849265	3E-17		0.0483808	[0.037-0.06] unit increase	NR [11722792] (imputed)	N
1809	chr6	160476944	160476945	rs3777411	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	LDL cholesterol levels	115,082 European ancestry individuals	NA	6q25.3		rs3777411-C	0.849265	1E-12		0.0407614	[0.029-0.052] unit increase	NR [11722792] (imputed)	N
1809	chr6	160476944	160476945	rs3777411	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large LDL particles	115,082 European ancestry individuals	NA	6q25.3		rs3777411-C	0.849265	3E-15		0.0454901	[0.034-0.057] unit increase	NR [11722792] (imputed)	N
1809	chr6	160476944	160476945	rs3777411	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large LDL	115,082 European ancestry individuals	NA	6q25.3		rs3777411-C	0.849265	6E-12		0.0393937	[0.028-0.051] unit increase	NR [11722792] (imputed)	N
1809	chr6	160476944	160476945	rs3777411	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in LDL	115,082 European ancestry individuals	NA	6q25.3		rs3777411-C	0.849265	1E-13		0.0427853	[0.032-0.054] unit increase	NR [11722792] (imputed)	N
1809	chr6	160476944	160476945	rs3777411	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	6q25.3		rs3777411-C	0.849265	4E-16		0.0469041	[0.036-0.058] unit increase	NR [11722792] (imputed)	N
1809	chr6	160476944	160476945	rs3777411	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large LDL	115,082 European ancestry individuals	NA	6q25.3		rs3777411-C	0.849265	3E-11		0.0379984	[0.027-0.049] unit increase	NR [11722792] (imputed)	N
1809	chr6	160490173	160490174	rs2065397	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large LDL	115,082 European ancestry individuals	NA	6q25.3		rs2065397-G	0.630077	3E-9		0.0248675	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
1809	chr6	160493008	160493009	rs77999960	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs77999960-T	NR	1E-22		0.2658	[0.21-0.32] unit decrease	Affymetrix [9000000] (imputed)	N
1809	chr6	160494408	160494409	rs629849	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IGF2R	5,361 Icelandic ancestry individuals	NA	6q25.3		rs629849-A	0.1505	2E-151		0.639459	[0.59-0.69] unit decrease	Illumina [7506463] (imputed)	N
1809	chr6	160494408	160494409	rs629849	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6q25.3	IGF2R	rs629849-G	0.85375	6E-86	(IGF2R, 3676_15_3)	0.65469646	[0.59-0.72] unit increase	Illumina [> 1000000] (imputed)	N
1809	chr6	160494408	160494409	rs629849	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6q25.3	IGF2R	rs629849-G	0.871	1E-162	(Cation-independent mannose-6-phosphate receptor, IGF2R.3676.15.3)	0.9	[0.84-0.96] unit increase	Affymetrix [10572788] (imputed)	N
1809	chr6	160494520	160494521	rs2282140	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IGF2R	5,361 Icelandic ancestry individuals	NA	6q25.3		rs2282140-T	0.1077	8E-132		0.693981	[0.64-0.75] unit increase	Illumina [7506463] (imputed)	N
1809	chr6	160496242	160496243	rs920811	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	6q25.3	SLC22A2	rs920811-G	0.526	6E-7		0.357	[0.16-0.56] ml/min/1.73m2 decrease	Affymetrix, Illumina [at least 5248638] (imputed)	N
1809	chr6	160498048	160498049	rs3777404	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6q25.3	NR	rs3777404-A	0.14	3E-151	(Cation-independent mannose-6-phosphate receptor, IGF2R.3676.15.3)	0.85	[0.79-0.91] unit increase	Affymetrix [10572788] (imputed)	N
1809	chr6	160501174	160501175	rs76130099	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs76130099-A	NR	2E-24		0.1292	[0.1-0.15] unit decrease	Affymetrix [9000000] (imputed)	N
1809	chr6	160501824	160501825	rs78425119	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	6q25.3		rs78425119-G	0.931946	2E-10		0.0489564	[0.034-0.064] unit decrease	NR [11722792] (imputed)	N
1809	chr6	160501824	160501825	rs78425119	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	6q25.3		rs78425119-G	0.931942	3E-9		0.0482762	[0.032-0.064] unit increase	NR [11722792] (imputed)	N
1809	chr6	160501824	160501825	rs78425119	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium HDL	115,082 European ancestry individuals	NA	6q25.3		rs78425119-G	0.931944	4E-8		0.044194	[0.028-0.06] unit decrease	NR [11722792] (imputed)	N
1809	chr6	160501824	160501825	rs78425119	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	6q25.3		rs78425119-G	0.931942	3E-8		0.0446862	[0.029-0.061] unit decrease	NR [11722792] (imputed)	N
1809	chr6	160501824	160501825	rs78425119	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	6q25.3	NR	rs78425119-A	NR	6E-15		0.0372	[0.028-0.047] unit increase	Affymetrix [9000000] (imputed)	N
1809	chr6	160501824	160501825	rs78425119	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	6q25.3	NR	rs78425119-A	NR	4E-33		0.057	[0.048-0.066] unit increase	Affymetrix [9000000] (imputed)	N
1809	chr6	160501824	160501825	rs78425119	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	6q25.3	NR	rs78425119-A	NR	9E-38		0.0612	[0.052-0.071] unit increase	Affymetrix [9000000] (imputed)	N
1809	chr6	160501824	160501825	rs78425119	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	6q25.3	NR	rs78425119-A	NR	5E-17		0.04	[0.031-0.049] unit increase	Affymetrix [9000000] (imputed)	N
1809	chr6	160501824	160501825	rs78425119	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	6q25.3	NR	rs78425119-A	NR	1E-40		0.0637	[0.054-0.073] unit increase	Affymetrix [9000000] (imputed)	N
1809	chr6	160503655	160503656	rs9457827	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (father's age at death)	309,383 European ancestry individuals	NA	6q25.3	NR	rs9457827-A	NR	2E-8		0.02982	[0.019-0.04] unit decrease	Illumina [541614]	N
1809	chr6	160503655	160503656	rs9457827	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (father's age at death or father's attained age)	up to 699,000 European ancestry individuals	NA	6q25.3	NR	rs9457827-G		7E-12				Illumina [458865]	N
1809	chr6	160505198	160505199	rs614754	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large VLDL	115,082 European ancestry individuals	NA	6q25.3		rs614754-C	0.0153979	9E-11		0.111479	[0.078-0.145] unit decrease	NR [11722792] (imputed)	N
1809	chr6	160505198	160505199	rs614754	28512139	Mack S	2017-05-16	J Lipid Res	A genome-wide association meta-analysis on lipoprotein (a) concentrations adjusted for apolipoprotein (a) isoforms.	Lipoprotein (a) levels	13,781 European ancestry individuals	NA	6q25.3	LPA	rs614754-C		1E-15		16.12	[12.19-20.05] mg/dL increase	Affymetrix, Illumina [at least 7600000] (imputed)	N
1809	chr6	160506461	160506462	rs2297363	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Total cholesterol levels	22,814 East Asian ancestry individuals	57,490 East Asian ancestry individuals	6q25.3	LPA	rs2297363-A	0.26	2E-8	(BMI unadjusted)	0.022	[0.014-0.03] unit decrease	Affymetrix, Illumina [~ 2400000] (imputed)	N
1809	chr6	160506461	160506462	rs2297363	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6q25.3	IGF2R, RP11-288H12.3	rs2297363-A	0.1182093	8E-31	(Cation-independent mannose-6-phosphate receptor)	0.7573	[0.63-0.88] unit increase	Affymetrix [509946]	N
1809	chr6	160506754	160506755	rs13220323	32492067	Ruffieux H	2020-06-03	PLoS Comput Biol	A fully joint Bayesian quantitative trait locus mapping of human protein abundance in plasma.	Protein quantitative trait loci	394 European ancestry individuals	548 European ancestry individuals	6q25.3	NR	rs13220323-?	NR	2E-16	(IGF-II receptor)			Illumina [~ 4000000] (imputed)	N
1809	chr6	160513792	160513793	rs3777399	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in IDL	115,082 European ancestry individuals	NA	6q25.3		rs3777399-G	0.866934	5E-12		0.0406385	[0.029-0.052] unit increase	NR [11722792] (imputed)	N
1809	chr6	160514282	160514283	rs80254170	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in HDL	115,082 European ancestry individuals	NA	6q25.3		rs80254170-A	0.924432	2E-9		0.0455824	[0.031-0.061] unit decrease	NR [11722792] (imputed)	N
1809	chr6	160517887	160517888	rs998203	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6q25.3		rs998203-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1809	chr6	160519227	160519228	rs78423775	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	6q25.3	NR	rs78423775-A	NR	7E-17		0.0391	[0.03-0.048] unit decrease	Affymetrix [9000000] (imputed)	N
1809	chr6	160519227	160519228	rs78423775	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	6q25.3	NR	rs78423775-A	NR	3E-22		0.0454	[0.036-0.055] unit decrease	Affymetrix [9000000] (imputed)	N
1809	chr6	160519227	160519228	rs78423775	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs78423775-A	NR	6E-61		0.0861	[0.076-0.096] unit decrease	Affymetrix [9000000] (imputed)	N
1809	chr6	160519227	160519228	rs78423775	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	6q25.3	NR	rs78423775-A	NR	5E-22		0.0453	[0.036-0.055] unit decrease	Affymetrix [9000000] (imputed)	N
1809	chr6	160519275	160519276	rs600324	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6q25.3	RP11-288H12.3, IGF2R	rs600324-T	0.102719	7E-48	(Cation-independent mannose-6-phosphate receptor)	0.9818	[0.86-1.11] unit decrease	Affymetrix [509946]	N
1809	chr6	160520805	160520806	rs73025516	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	6q25.3	IGF2R	rs73025516-A	0.955475	9E-10		0.0309443	[0.021-0.041] unit increase	Affymetrix [NR] (imputed)	N
1809	chr6	160520805	160520806	rs73025516	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	6q25.3	IGF2R	rs73025516-A	0.955474	4E-9		0.0296434	[0.02-0.04] unit increase	Affymetrix [NR] (imputed)	N
1809	chr6	160521884	160521885	rs146203232	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	6q25.3		rs146203232-C	0.925338	9E-12		0.0509989	[0.036-0.066] unit decrease	NR [11722792] (imputed)	N
1809	chr6	160521884	160521885	rs146203232	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very small VLDL	115,082 European ancestry individuals	NA	6q25.3		rs146203232-C	0.925338	4E-16		0.0624999	[0.047-0.078] unit decrease	NR [11722792] (imputed)	N
1809	chr6	160521884	160521885	rs146203232	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large HDL	115,082 European ancestry individuals	NA	6q25.3		rs146203232-C	0.925338	2E-10		0.0488877	[0.034-0.064] unit decrease	NR [11722792] (imputed)	N
1809	chr6	160521884	160521885	rs146203232	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small LDL	115,082 European ancestry individuals	NA	6q25.3		rs146203232-C	0.925338	6E-14		0.0574635	[0.042-0.072] unit decrease	NR [11722792] (imputed)	N
1809	chr6	160521884	160521885	rs146203232	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium LDL	115,082 European ancestry individuals	NA	6q25.3		rs146203232-C	0.925338	2E-16		0.0633078	[0.048-0.078] unit decrease	NR [11722792] (imputed)	N
1809	chr6	160521884	160521885	rs146203232	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large LDL	115,082 European ancestry individuals	NA	6q25.3		rs146203232-C	0.925338	1E-17		0.0659743	[0.051-0.081] unit decrease	NR [11722792] (imputed)	N
1809	chr6	160521884	160521885	rs146203232	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in LDL	115,082 European ancestry individuals	NA	6q25.3		rs146203232-C	0.925338	3E-17		0.0651159	[0.05-0.08] unit decrease	NR [11722792] (imputed)	N
1809	chr6	160521884	160521885	rs146203232	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in IDL	115,082 European ancestry individuals	NA	6q25.3		rs146203232-C	0.925338	6E-18		0.0665111	[0.051-0.082] unit decrease	NR [11722792] (imputed)	N
1809	chr6	160521884	160521885	rs146203232	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large VLDL	115,082 European ancestry individuals	NA	6q25.3		rs146203232-C	0.925338	8E-11		0.0493292	[0.034-0.064] unit decrease	NR [11722792] (imputed)	N
1809	chr6	160521884	160521885	rs146203232	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small VLDL	115,082 European ancestry individuals	NA	6q25.3		rs146203232-C	0.925338	1E-17		0.0666875	[0.051-0.082] unit decrease	NR [11722792] (imputed)	N
1809	chr6	160521884	160521885	rs146203232	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	6q25.3		rs146203232-C	0.925336	1E-15		0.0613784	[0.046-0.076] unit decrease	NR [11722792] (imputed)	N
1809	chr6	160521884	160521885	rs146203232	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large VLDL	115,082 European ancestry individuals	NA	6q25.3		rs146203232-C	0.925338	6E-12		0.0523572	[0.037-0.067] unit decrease	NR [11722792] (imputed)	N
1809	chr6	160521884	160521885	rs146203232	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in VLDL	115,082 European ancestry individuals	NA	6q25.3		rs146203232-C	0.925338	1E-16		0.064585	[0.049-0.08] unit decrease	NR [11722792] (imputed)	N
1809	chr6	160521884	160521885	rs146203232	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	6q25.3		rs146203232-C	0.925338	8E-13		0.0546175	[0.04-0.07] unit decrease	NR [11722792] (imputed)	N
1809	chr6	160521884	160521885	rs146203232	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large VLDL particles	115,082 European ancestry individuals	NA	6q25.3		rs146203232-C	0.925338	2E-11		0.0507857	[0.036-0.066] unit decrease	NR [11722792] (imputed)	N
1809	chr6	160521884	160521885	rs146203232	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small VLDL particles	115,082 European ancestry individuals	NA	6q25.3		rs146203232-C	0.925338	7E-18		0.0668614	[0.052-0.082] unit decrease	NR [11722792] (imputed)	N
1809	chr6	160521884	160521885	rs146203232	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6q25.3		rs146203232-C	0.925338	1E-8		0.0447624	[0.029-0.06] unit decrease	NR [11722792] (imputed)	N
1809	chr6	160521884	160521885	rs146203232	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	6q25.3		rs146203232-C	0.925338	2E-11		0.0512029	[0.036-0.066] unit increase	NR [11722792] (imputed)	N
1809	chr6	160521884	160521885	rs146203232	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large VLDL	115,082 European ancestry individuals	NA	6q25.3		rs146203232-C	0.925338	3E-16		0.0633202	[0.048-0.079] unit decrease	NR [11722792] (imputed)	N
1809	chr6	160521884	160521885	rs146203232	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large VLDL	115,082 European ancestry individuals	NA	6q25.3		rs146203232-C	0.925338	7E-16		0.0628465	[0.048-0.078] unit decrease	NR [11722792] (imputed)	N
1809	chr6	160521884	160521885	rs146203232	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	6q25.3		rs146203232-C	0.925338	1E-14		0.0594577	[0.044-0.075] unit decrease	NR [11722792] (imputed)	N
1809	chr6	160521884	160521885	rs146203232	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	6q25.3		rs146203232-C	0.925338	8E-15		0.0598181	[0.045-0.075] unit decrease	NR [11722792] (imputed)	N
1809	chr6	160521884	160521885	rs146203232	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite concentrations in chronic kidney disease	1,143 European ancestry cases	NA	6q25.3	IGF2R	rs146203232-T	NR	2E-18	(Butyrylcarnitine, Isobutyrylcarnitine)	0.541769	[0.42-0.66] unit decrease	Illumina [up to 9281895] (imputed)	N
1809	chr6	160525286	160525287	rs2297372	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	6q25.3	NR	rs2297372-C	NR	7E-12		0.0181	[0.013-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
1809	chr6	160525286	160525287	rs2297372	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	6q25.3	NR	rs2297372-C	NR	3E-14		0.0201	[0.015-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
1809	chr6	160525286	160525287	rs2297372	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	6q25.3	NR	rs2297372-C	NR	7E-10		0.0163	[0.011-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
1809	chr6	160525286	160525287	rs2297372	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	6q25.3	NR	rs2297372-C	NR	1E-9		0.016	[0.011-0.021] unit increase	Affymetrix [9000000] (imputed)	N
1809	chr6	160525286	160525287	rs2297372	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	6q25.3	NR	rs2297372-C	NR	1E-14		0.0205	[0.015-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
1809	chr6	160532334	160532335	rs58458113	32226016	Hu Y	2020-03-30	PLoS Genet	Minority-centric meta-analyses of blood lipid levels identify novel loci in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Total cholesterol levels	17,701 African American individuals, 22,954 Hispanics ancestry individuals, 2,387 East Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals, 22,912 European ancestry individuals	up to 71,987 African American individuals, up to 34,899 Hispanics ancestry individuals, up to 315,133 European ancestry individuals, up to 9,593 Asian ancestry individuals, up to 94,674 European ancestry, East Asian ancestry, African American, South Asian ancestry, Hispanic individuals	6q25.3		rs58458113-?	NR	6E-10		0.059	[0.039-0.079] mg/dL decrease	Affymetrix, Illumina [NR] (imputed)	N
1809	chr6	160532334	160532335	rs58458113	32226016	Hu Y	2020-03-30	PLoS Genet	Minority-centric meta-analyses of blood lipid levels identify novel loci in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Low density lipoprotein cholesterol levels	17,222 African American individuals, 22,406 Hispanics ancestry individuals, 2,316 East Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals, 22,331 European ancestry individuals	up to 71,987 African American individuals, up to 34,899 Hispanics ancestry individuals, up to 315,133 European ancestry individuals, up to 9,593 Asian ancestry individuals, up to 94,674 European ancestry, East Asian ancestry, African American, South Asian ancestry, Hispanic individuals	6q25.3		rs58458113-?	NR	4E-11		0.063	[0.043-0.083] mg/dL decrease	Affymetrix, Illumina [NR] (imputed)	N
1809	chr6	160533826	160533827	rs117727234	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs117727234-A	NR	3E-125		0.2371	[0.22-0.26] unit decrease	Affymetrix [9000000] (imputed)	N
1809	chr6	160537307	160537308	rs73025532	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	6q25.3	SLC22A2	rs73025532-T	0.088	2E-9		0.53	[0.14-0.92] ml/min/1.73m2 decrease	Affymetrix, Illumina [at least 5248638] (imputed)	N
1809	chr6	160541347	160541348	rs9457840	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	6q25.3	NR	rs9457840-?		2E-8	(LPA)	1.069	[NR] unit increase	Illumina [NR]	N
1809	chr6	160543147	160543148	rs12208357	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	VLDL cholesterol levels	115,082 European ancestry individuals	NA	6q25.3		rs12208357-C	0.93	2E-18		0.0709053	[0.055-0.087] unit decrease	NR [11722792] (imputed)	N
1809	chr6	160543147	160543148	rs12208357	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very small VLDL	115,082 European ancestry individuals	NA	6q25.3		rs12208357-C	0.93	3E-19		0.0713799	[0.056-0.087] unit decrease	NR [11722792] (imputed)	N
1809	chr6	160543147	160543148	rs12208357	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small LDL	115,082 European ancestry individuals	NA	6q25.3		rs12208357-C	0.93	3E-15		0.0640823	[0.048-0.08] unit decrease	NR [11722792] (imputed)	N
1809	chr6	160543147	160543148	rs12208357	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium VLDL	115,082 European ancestry individuals	NA	6q25.3		rs12208357-C	0.93	1E-15		0.0644448	[0.049-0.08] unit decrease	NR [11722792] (imputed)	N
1809	chr6	160543147	160543148	rs12208357	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium LDL	115,082 European ancestry individuals	NA	6q25.3		rs12208357-C	0.93	2E-14		0.0620741	[0.046-0.078] unit decrease	NR [11722792] (imputed)	N
1809	chr6	160543147	160543148	rs12208357	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	6q25.3		rs12208357-C	0.93	3E-12		0.0555516	[0.04-0.071] unit decrease	NR [11722792] (imputed)	N
1809	chr6	160543147	160543148	rs12208357	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large LDL	115,082 European ancestry individuals	NA	6q25.3		rs12208357-C	0.93	5E-12		0.0555684	[0.04-0.071] unit decrease	NR [11722792] (imputed)	N
1809	chr6	160543147	160543148	rs12208357	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in VLDL	115,082 European ancestry individuals	NA	6q25.3		rs12208357-C	0.93	5E-14		0.0597818	[0.044-0.075] unit decrease	NR [11722792] (imputed)	N
1809	chr6	160543147	160543148	rs12208357	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in LDL	115,082 European ancestry individuals	NA	6q25.3		rs12208357-C	0.93	3E-13		0.0590958	[0.043-0.075] unit decrease	NR [11722792] (imputed)	N
1809	chr6	160543147	160543148	rs12208357	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total free cholesterol levels	115,082 European ancestry individuals	NA	6q25.3		rs12208357-C	0.93	2E-12		0.055726	[0.04-0.071] unit decrease	NR [11722792] (imputed)	N
1809	chr6	160543147	160543148	rs12208357	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total fatty acid levels	115,006 European ancestry individuals	NA	6q25.3		rs12208357-C	0.930006	1E-11		0.054141	[0.038-0.07] unit decrease	NR [11722792] (imputed)	N
1809	chr6	160543147	160543148	rs12208357	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Saturated fatty acid levels	115,006 European ancestry individuals	NA	6q25.3		rs12208357-C	0.930006	2E-10		0.0507871	[0.035-0.066] unit decrease	NR [11722792] (imputed)	N
1809	chr6	160543147	160543148	rs12208357	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of apolipoprotein B to apolipoprotein A1 levels	115,082 European ancestry individuals	NA	6q25.3		rs12208357-C	0.93	2E-16		0.0659686	[0.05-0.082] unit decrease	NR [11722792] (imputed)	N
1809	chr6	160543147	160543148	rs12208357	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Polyunsaturated fatty acid levels	115,006 European ancestry individuals	NA	6q25.3		rs12208357-C	0.930006	4E-10		0.0493745	[0.034-0.065] unit decrease	NR [11722792] (imputed)	N
1809	chr6	160543147	160543148	rs12208357	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very small VLDL	115,082 European ancestry individuals	NA	6q25.3		rs12208357-C	0.93	4E-20		0.0731886	[0.058-0.089] unit decrease	NR [11722792] (imputed)	N
1809	chr6	160543147	160543148	rs12208357	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small VLDL	115,082 European ancestry individuals	NA	6q25.3		rs12208357-C	0.93	2E-18		0.0709191	[0.055-0.087] unit decrease	NR [11722792] (imputed)	N
1809	chr6	160543147	160543148	rs12208357	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small LDL	115,082 European ancestry individuals	NA	6q25.3		rs12208357-C	0.93	1E-13		0.0600124	[0.044-0.076] unit decrease	NR [11722792] (imputed)	N
1809	chr6	160543147	160543148	rs12208357	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium VLDL	115,082 European ancestry individuals	NA	6q25.3		rs12208357-C	0.93	4E-17		0.0681126	[0.052-0.084] unit decrease	NR [11722792] (imputed)	N
1809	chr6	160543147	160543148	rs12208357	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium LDL	115,082 European ancestry individuals	NA	6q25.3		rs12208357-C	0.93	6E-14		0.061048	[0.045-0.077] unit decrease	NR [11722792] (imputed)	N
1809	chr6	160543147	160543148	rs12208357	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large VLDL	115,082 European ancestry individuals	NA	6q25.3		rs12208357-C	0.93	3E-12		0.0545084	[0.039-0.07] unit decrease	NR [11722792] (imputed)	N
1809	chr6	160543147	160543148	rs12208357	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in IDL	115,082 European ancestry individuals	NA	6q25.3		rs12208357-C	0.93	2E-13		0.0573706	[0.042-0.073] unit decrease	NR [11722792] (imputed)	N
1809	chr6	160543147	160543148	rs12208357	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-6 fatty acid levels	115,006 European ancestry individuals	NA	6q25.3		rs12208357-C	0.930006	2E-11		0.0533161	[0.038-0.069] unit decrease	NR [11722792] (imputed)	N
1809	chr6	160543147	160543148	rs12208357	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Monounsaturated fatty acid levels	115,006 European ancestry individuals	NA	6q25.3		rs12208357-C	0.930006	4E-11		0.052959	[0.037-0.069] unit decrease	NR [11722792] (imputed)	N
1809	chr6	160543147	160543148	rs12208357	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Linoleic acid levels	115,006 European ancestry individuals	NA	6q25.3		rs12208357-C	0.930006	2E-12		0.0559777	[0.04-0.072] unit decrease	NR [11722792] (imputed)	N
1809	chr6	160543147	160543148	rs12208357	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycoprotein acetyls levels	115,082 European ancestry individuals	NA	6q25.3		rs12208357-C	0.93	4E-9		0.0473486	[0.032-0.063] unit decrease	NR [11722792] (imputed)	N
1809	chr6	160543147	160543148	rs12208357	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	6q25.3		rs12208357-C	0.93	2E-18		0.0696482	[0.054-0.085] unit decrease	NR [11722792] (imputed)	N
1809	chr6	160543147	160543148	rs12208357	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	6q25.3		rs12208357-C	0.93	2E-17		0.0691981	[0.053-0.085] unit decrease	NR [11722792] (imputed)	N
1809	chr6	160543147	160543148	rs12208357	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	6q25.3		rs12208357-C	0.93	2E-16		0.0668896	[0.051-0.083] unit decrease	NR [11722792] (imputed)	N
1809	chr6	160543147	160543148	rs12208357	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	6q25.3		rs12208357-C	0.93	9E-13		0.0559279	[0.041-0.071] unit decrease	NR [11722792] (imputed)	N
1809	chr6	160543147	160543148	rs12208357	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in VLDL	115,082 European ancestry individuals	NA	6q25.3		rs12208357-C	0.93	4E-17		0.0676294	[0.052-0.083] unit decrease	NR [11722792] (imputed)	N
1809	chr6	160543147	160543148	rs12208357	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in IDL	115,082 European ancestry individuals	NA	6q25.3		rs12208357-C	0.93	1E-8		0.0446162	[0.029-0.06] unit decrease	NR [11722792] (imputed)	N
1809	chr6	160543147	160543148	rs12208357	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very small VLDL particles	115,082 European ancestry individuals	NA	6q25.3		rs12208357-C	0.93	1E-19		0.0724065	[0.057-0.088] unit decrease	NR [11722792] (imputed)	N
1809	chr6	160543147	160543148	rs12208357	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small LDL particles	115,082 European ancestry individuals	NA	6q25.3		rs12208357-C	0.93	5E-17		0.0681957	[0.052-0.084] unit decrease	NR [11722792] (imputed)	N
1809	chr6	160543147	160543148	rs12208357	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium VLDL particles	115,082 European ancestry individuals	NA	6q25.3		rs12208357-C	0.93	2E-16		0.066342	[0.05-0.082] unit decrease	NR [11722792] (imputed)	N
1809	chr6	160543147	160543148	rs12208357	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium LDL particles	115,082 European ancestry individuals	NA	6q25.3		rs12208357-C	0.93	2E-14		0.0623129	[0.046-0.078] unit decrease	NR [11722792] (imputed)	N
1809	chr6	160543147	160543148	rs12208357	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large VLDL particles	115,082 European ancestry individuals	NA	6q25.3		rs12208357-C	0.93	2E-11		0.0526157	[0.037-0.068] unit decrease	NR [11722792] (imputed)	N
1809	chr6	160543147	160543148	rs12208357	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of VLDL particles	115,082 European ancestry individuals	NA	6q25.3		rs12208357-C	0.93	1E-18		0.0708882	[0.055-0.087] unit decrease	NR [11722792] (imputed)	N
1809	chr6	160543147	160543148	rs12208357	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of LDL particles	115,082 European ancestry individuals	NA	6q25.3		rs12208357-C	0.93	6E-16		0.0655544	[0.05-0.081] unit decrease	NR [11722792] (imputed)	N
1809	chr6	160543147	160543148	rs12208357	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of IDL particles	115,082 European ancestry individuals	NA	6q25.3		rs12208357-C	0.93	8E-15		0.0624928	[0.047-0.078] unit decrease	NR [11722792] (imputed)	N
1809	chr6	160543147	160543148	rs12208357	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small VLDL	115,082 European ancestry individuals	NA	6q25.3		rs12208357-C	0.93	6E-20		0.0739446	[0.058-0.09] unit decrease	NR [11722792] (imputed)	N
1809	chr6	160543147	160543148	rs12208357	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small LDL	115,082 European ancestry individuals	NA	6q25.3		rs12208357-C	0.93	4E-16		0.0661036	[0.05-0.082] unit decrease	NR [11722792] (imputed)	N
1809	chr6	160543147	160543148	rs12208357	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium LDL	115,082 European ancestry individuals	NA	6q25.3		rs12208357-C	0.93	1E-14		0.062533	[0.047-0.078] unit decrease	NR [11722792] (imputed)	N
1809	chr6	160543147	160543148	rs12208357	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in VLDL	115,082 European ancestry individuals	NA	6q25.3		rs12208357-C	0.93	1E-18		0.0715445	[0.056-0.087] unit decrease	NR [11722792] (imputed)	N
1809	chr6	160543147	160543148	rs12208357	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	6q25.3		rs12208357-C	0.93	3E-15		0.0619777	[0.047-0.077] unit decrease	NR [11722792] (imputed)	N
1809	chr6	160543147	160543148	rs12208357	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	6q25.3		rs12208357-C	0.93	3E-19		0.0727963	[0.057-0.089] unit decrease	NR [11722792] (imputed)	N
1809	chr6	160543147	160543148	rs12208357	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small LDL	115,082 European ancestry individuals	NA	6q25.3		rs12208357-C	0.93	2E-14		0.0623252	[0.046-0.078] unit decrease	NR [11722792] (imputed)	N
1809	chr6	160543147	160543148	rs12208357	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	6q25.3		rs12208357-C	0.93	1E-13		0.0601986	[0.044-0.076] unit decrease	NR [11722792] (imputed)	N
1809	chr6	160543147	160543148	rs12208357	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in IDL	115,082 European ancestry individuals	NA	6q25.3		rs12208357-C	0.93	8E-9		0.0453394	[0.03-0.061] unit decrease	NR [11722792] (imputed)	N
1809	chr6	160543147	160543148	rs12208357	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein B levels	115,082 European ancestry individuals	NA	6q25.3		rs12208357-C	0.93	7E-17		0.0677003	[0.052-0.084] unit decrease	NR [11722792] (imputed)	N
1809	chr6	160543147	160543148	rs12208357	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	6q25.3	SLC22A1	rs12208357-C	0.929877	7E-16		0.00353361	[0.0026-0.0044] unit decrease	Affymetrix [13995440] (imputed)	N
1809	chr6	160543147	160543148	rs12208357	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	6q25.3	SLC22A1	rs12208357-C	0.929898	3E-44		0.057141	[0.049-0.065] unit decrease	Affymetrix [NR] (imputed)	N
1809	chr6	160543147	160543148	rs12208357	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	6q25.3	SLC22A1	rs12208357-C	0.92992	5E-54		0.0632075	[0.055-0.071] unit decrease	Affymetrix [NR] (imputed)	N
1809	chr6	160543147	160543148	rs12208357	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	6q25.3	SLC22A1	rs12208357-T	0.1	8E-16	(nicotinamide riboside)	0.376	[0.28-0.47] unit increase	Illumina [7750367] (imputed)	N
1809	chr6	160543147	160543148	rs12208357	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6q25.3	NR	rs12208357-C	NR	2E-9		0.046	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1809	chr6	160543147	160543148	rs12208357	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6q25.3	NR	rs12208357-C	0.925	9E-9	(EA)	0.046	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1809	chr6	160543147	160543148	rs12208357	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6q25.3	NR	rs12208357-C	NR	3E-13		0.062	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1809	chr6	160543147	160543148	rs12208357	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6q25.3	NR	rs12208357-C	0.925	5E-13	(EA)	0.063	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1809	chr6	160543147	160543148	rs12208357	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6q25.3	NR	rs12208357-C	NR	5E-13		0.063	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1809	chr6	160543147	160543148	rs12208357	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6q25.3	NR	rs12208357-C	0.925	8E-13	(EA)	0.064	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1809	chr6	160543147	160543148	rs12208357	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	Cholesterol, total	up to 62,166 European ancestry individuals	NA	6q25.3	LPA	rs12208357-T	0.06	9E-14		0.092	[0.068-0.116] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
1809	chr6	160543329	160543330	rs200865946	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs200865946-A	NR	2E-13		0.3855	[0.28-0.49] unit increase	Affymetrix [9000000] (imputed)	N
1809	chr6	160551092	160551093	rs4646272	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	6q25.3		rs4646272-T	0.939918	6E-14		0.0656122	[0.048-0.083] unit decrease	NR [11722792] (imputed)	N
1809	chr6	160551203	160551204	rs683369	22179738	Lai HM	2011-12-16	Rheumatology (Oxford)	Gout and type 2 diabetes have a mutual inter-dependent effect on genetic risk factors and higher incidences.	Gout	20 Han Chinese ancestry male gout cases, 42 Han Chinese ancestry male controls	NA	6q25.3	SLC22A1	rs683369-?		1E-7				Illumina [479403]	N
1809	chr6	160551485	160551486	rs112201728	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	6q25.3		rs112201728-C	0.930287	1E-9		0.0495858	[0.034-0.066] unit decrease	NR [11722792] (imputed)	N
1809	chr6	160551485	160551486	rs112201728	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	6q25.3	SLC22A1	rs112201728-T	0.0287825	8E-18	(isobutyrylcarnitine (C4))	0.569	[0.44-0.7] unit decrease	Illumina [13039987] (imputed)	N
1809	chr6	160551485	160551486	rs112201728	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Urinary metabolite levels in chronic kidney disease	1,143 European ancestry cases	NA	6q25.3	SLC22A1	rs112201728-T	NR	5E-8	(Butyrylcarnitine, Isobutyrylcarnitine)	0.389716	[0.25-0.53] unit decrease	Illumina [up to 9281895] (imputed)	N
1809	chr6	160557153	160557154	rs4646276	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	6q25.3	SLC22A1	rs4646276-G	0.777891	7E-12	(acisoga)	0.189	[0.13-0.24] unit decrease	Illumina [13039987] (imputed)	N
1809	chr6	160557153	160557154	rs4646276	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	1,509 European ancestry individuals	6q25.3	SLC22A1	rs4646276-G	0.777891	7E-12	(acisoga)	0.189	[0.13-0.24] unit decrease	Illumina [13039987] (imputed)	N
1809	chr6	160557642	160557643	rs2282143	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	6q25.3	NR	rs2282143-T	NR	1E-12		0.0638	[0.046-0.081] unit decrease	Affymetrix [9000000] (imputed)	N
1809	chr6	160557642	160557643	rs2282143	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	6q25.3	NR	rs2282143-T	NR	6E-28		0.0985	[0.081-0.116] unit increase	Affymetrix [9000000] (imputed)	N
1809	chr6	160557642	160557643	rs2282143	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	6q25.3	NR	rs2282143-T	NR	5E-34		0.1094	[0.092-0.127] unit increase	Affymetrix [9000000] (imputed)	N
1809	chr6	160557642	160557643	rs2282143	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs2282143-T	NR	1E-138		0.3049	[0.28-0.33] unit increase	Affymetrix [9000000] (imputed)	N
1809	chr6	160557642	160557643	rs2282143	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	6q25.3	NR	rs2282143-T	NR	8E-33		0.1076	[0.09-0.125] unit increase	Affymetrix [9000000] (imputed)	N
1809	chr6	160557642	160557643	rs2282143	32589924	Bi W	2020-06-23	Am J Hum Genet	A Fast and Accurate Method for Genome-Wide Time-to-Event Data Analysis and Its Application to UK Biobank.	Essential hypertension (time to event)	76,566 British ancestry cases, 206,305 British ancestry controls	NA	6q25.3	SLC22A1	rs2282143-?	NR	3E-8				NR [~ 24000000] (imputed)	N
1809	chr6	160558621	160558621	rs145082432	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large VLDL	115,082 European ancestry individuals	NA	6q25.3		rs145082432-C	0.976721	4E-8		0.0720437	[0.046-0.098] unit decrease	NR [11722792] (imputed)	N
1809	chr6	160558621	160558621	rs145082432	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large VLDL	115,082 European ancestry individuals	NA	6q25.3		rs145082432-C	0.976721	2E-8		0.0741752	[0.048-0.1] unit decrease	NR [11722792] (imputed)	N
1809	chr6	160558621	160558621	rs145082432	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in VLDL	115,082 European ancestry individuals	NA	6q25.3		rs145082432-C	0.976721	2E-8		0.0736516	[0.048-0.099] unit decrease	NR [11722792] (imputed)	N
1809	chr6	160558621	160558621	rs145082432	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6q25.3		rs145082432-C	0.976721	3E-8		0.0734173	[0.048-0.099] unit decrease	NR [11722792] (imputed)	N
1809	chr6	160558621	160558621	rs145082432	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6q25.3		rs145082432-C	0.976721	5E-9		0.0776005	[0.052-0.104] unit decrease	NR [11722792] (imputed)	N
1809	chr6	160558621	160558621	rs145082432	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6q25.3		rs145082432-C	0.976721	3E-8		0.0735494	[0.048-0.099] unit decrease	NR [11722792] (imputed)	N
1809	chr6	160559441	160559442	rs6937722	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium VLDL	115,082 European ancestry individuals	NA	6q25.3		rs6937722-G	0.955039	4E-8		0.0530635	[0.034-0.072] unit decrease	NR [11722792] (imputed)	N
1809	chr6	160559441	160559442	rs6937722	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large VLDL	115,082 European ancestry individuals	NA	6q25.3		rs6937722-G	0.955039	2E-9		0.057575	[0.039-0.076] unit decrease	NR [11722792] (imputed)	N
1809	chr6	160560154	160560155	rs112476023	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs112476023-T	NR	5E-39		0.196	[0.17-0.23] unit decrease	Affymetrix [9000000] (imputed)	N
1809	chr6	160560823	160560824	rs34130495	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs34130495-A	NR	7E-58		0.1315	[0.12-0.15] unit decrease	Affymetrix [9000000] (imputed)	N
1809	chr6	160560880	160560883	rs202220802	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	6q25.3		rs202220802-C	NR	8E-10		0.0181	[0.012-0.024] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
1809	chr6	160560880	160560883	rs202220802	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	6q25.3	SLC22A1	rs202220802-CATG	0.793591	9E-22	(pimeloylcarnitine/3-methyladipoylcarnitine (C7-DC))	0.255	[0.2-0.31] unit decrease	Illumina [13039987] (imputed)	N
1809	chr6	160560880	160560883	rs202220802	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	6q25.3	SLC22A1	rs202220802-CATG	0.793591	6E-16	(propionylcarnitine (C3))	0.225	[0.17-0.28] unit increase	Illumina [13039987] (imputed)	N
1809	chr6	160560880	160560883	rs202220802	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	6q25.3	SLC22A1	rs202220802-CATG	0.793591	1E-40	(isobutyrylcarnitine (C4))	0.367	[0.31-0.42] unit increase	Illumina [13039987] (imputed)	N
1809	chr6	160560897	160560905	rs113569197	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Low density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA		SLC22A1	rs113569197-?		3E-9		0.05	[0.038-0.062] unit decrease	Illumina [31500000] (imputed)	N
1809	chr6	160562480	160562481	rs73025562	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	6q25.3	SLC22A1	rs73025562-G	0.754124	2E-9		0.0138418	[0.0093-0.0184] unit decrease	Affymetrix [NR] (imputed)	N
1810	chr6	160564475	160564476	rs662138	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total phospholipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	6q25.3		rs662138-C	0.814124	2E-8		0.0282167	[0.018-0.038] unit decrease	NR [11722792] (imputed)	N
1810	chr6	160564475	160564476	rs662138	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-3 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	6q25.3		rs662138-C	0.814088	9E-10		0.0312278	[0.021-0.041] unit increase	NR [11722792] (imputed)	N
1810	chr6	160564475	160564476	rs662138	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small LDL	115,082 European ancestry individuals	NA	6q25.3		rs662138-C	0.814124	2E-8		0.0295794	[0.019-0.04] unit decrease	NR [11722792] (imputed)	N
1810	chr6	160564475	160564476	rs662138	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	6q25.3		rs662138-G	NR	2E-15		0.0234	[0.018-0.029] unit decrease	Affymetrix, Illumina [20535842] (imputed)	N
1810	chr6	160564475	160564476	rs662138	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	6q25.3	SLC22A1	rs662138-C	0.813776	1E-12		0.0048624	[0.0036-0.0062] unit increase	Affymetrix [13995440] (imputed)	N
1810	chr6	160564475	160564476	rs662138	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	6q25.3	NR	rs662138-G	NR	3E-53		0.047	[0.041-0.053] unit increase	Affymetrix [9000000] (imputed)	N
1810	chr6	160564475	160564476	rs662138	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	6q25.3	NR	rs662138-G	NR	8E-18		0.0264	[0.02-0.032] unit decrease	Affymetrix [9000000] (imputed)	N
1810	chr6	160564475	160564476	rs662138	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	6q25.3	NR	rs662138-G	NR	4E-60		0.0501	[0.044-0.056] unit increase	Affymetrix [9000000] (imputed)	N
1810	chr6	160564475	160564476	rs662138	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs662138-G	NR	3E-15		0.027	[0.02-0.034] unit increase	Affymetrix [9000000] (imputed)	N
1810	chr6	160564475	160564476	rs662138	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	6q25.3	NR	rs662138-G	NR	5E-24		0.0311	[0.025-0.037] unit increase	Affymetrix [9000000] (imputed)	N
1810	chr6	160564475	160564476	rs662138	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	6q25.3	NR	rs662138-G	NR	2E-22		0.0297	[0.024-0.036] unit increase	Affymetrix [9000000] (imputed)	N
1810	chr6	160564475	160564476	rs662138	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	6q25.3	NR	rs662138-G	NR	4E-19		0.0298	[0.023-0.036] unit decrease	Affymetrix [9000000] (imputed)	N
1810	chr6	160564475	160564476	rs662138	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	6q25.3	NR	rs662138-G	NR	5E-24		0.031	[0.025-0.037] unit decrease	Affymetrix [9000000] (imputed)	N
1810	chr6	160564475	160564476	rs662138	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	6q25.3	NR	rs662138-G	NR	3E-10		0.0193	[0.013-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
1810	chr6	160564475	160564476	rs662138	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	6q25.3	NR	rs662138-G	NR	7E-55		0.0479	[0.042-0.054] unit increase	Affymetrix [9000000] (imputed)	N
1810	chr6	160564475	160564476	rs662138	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	6q25.3	SLC22A1	rs662138-G	0.16	3E-13	(isobutyrylcarnitine (C4))	0.328	[0.24-0.42] unit decrease	Illumina [7750367] (imputed)	N
1810	chr6	160564475	160564476	rs662138	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	6q25.3	SLC22A1	rs662138-G	0.16	2E-13	(X - 17323)	0.307	[0.22-0.39] unit decrease	Illumina [7750367] (imputed)	N
1810	chr6	160564475	160564476	rs662138	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x long total sleep time interaction (2df test)	2,913 African American long sleepers, 358 Chinese ancestry long sleepers, 110 Asian ancestry long sleepers, 7,583 European ancestry long sleepers, 1,036 Hispanic/Latino long sleepers, up to 11,862 African American controls, 1,432 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,744 European ancestry controls, 4,066 Hispanic/Latino controls	at least 214 African American long sleepers, 616 East Asian ancestry long sleepers, up to 6,657 European ancestry long sleepers, 2,457 Hispanic long sleepers, at least 913 African American controls, 2,517 East Asian ancestry controls, up to 26,868 European ancestry controls, 9,870 Hispanic controls	6q25.3	SLC22A1	rs662138-?	NR	7E-18		1.838	[1.35-2.32] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
1810	chr6	160564475	160564476	rs662138	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	6q25.3	SLC22A1	rs662138-C	0.83	9E-25	(X-11261)	0.063	[0.051-0.075] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
1810	chr6	160564475	160564476	rs662138	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	6q25.3	SLC22A1	rs662138-C	0.83	5E-49	(isobutyrylcarnitine)	0.077	[0.067-0.087] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
1810	chr6	160564475	160564476	rs662138	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	6q25.3	SLC22A1	rs662138-C	0.83	3E-14	(propionylcarnitine)	0.021	[0.015-0.027] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
1810	chr6	160564475	160564476	rs662138	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	6q25.3	SLC22A1	rs662138-C	0.83	1E-22	(X-03056--N-[3-(2-oxopyrrolidin-1-yl)propyl]acetamide)	0.034	[0.026-0.042] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
1810	chr6	160564475	160564476	rs662138	23093944	Krumsiek J	2012-10-18	PLoS Genet	Mining the unknown: a systems approach to metabolite identification combining genetic and metabolic information.	Serum metabolite levels	1,678 European ancestry individuals	NA	6q25.3	SLC22A1	rs662138-?	NR	5E-15	(isobutyrylcarnitine)	0.06786	[NR] unit decrease	Affymetrix [655658]	N
1810	chr6	160564475	160564476	rs662138	21886157	Suhre K	2011-08-31	Nature	Human metabolic individuality in biomedical and pharmaceutical research.	Metabolic traits	2,820 European ancestry individuals	NA	6q25.3	SLC22A1	rs662138-G	0.163	7E-25	(isobutyrylcarnitine + 3 other traits)	0.155	[NR] unit decrease	Affymetrix, Illumina [534665]	N
1810	chr6	160567927	160567928	rs3798167	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in IDL	115,082 European ancestry individuals	NA	6q25.3		rs3798167-G	0.799907	3E-12		0.0351621	[0.025-0.045] unit increase	NR [11722792] (imputed)	N
1810	chr6	160567927	160567928	rs3798167	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large LDL	115,082 European ancestry individuals	NA	6q25.3		rs3798167-G	0.799907	3E-12		0.0360353	[0.026-0.046] unit increase	NR [11722792] (imputed)	N
1810	chr6	160567927	160567928	rs3798167	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in LDL	115,082 European ancestry individuals	NA	6q25.3		rs3798167-G	0.799907	6E-13		0.037289	[0.027-0.047] unit increase	NR [11722792] (imputed)	N
1810	chr6	160567927	160567928	rs3798167	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	6q25.3		rs3798167-G	0.799907	2E-10		0.0329764	[0.023-0.043] unit increase	NR [11722792] (imputed)	N
1810	chr6	160567927	160567928	rs3798167	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in LDL	115,082 European ancestry individuals	NA	6q25.3		rs3798167-G	0.799907	3E-10		0.0324745	[0.022-0.043] unit increase	NR [11722792] (imputed)	N
1810	chr6	160567927	160567928	rs3798167	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Clinical LDL cholesterol levels	115,082 European ancestry individuals	NA	6q25.3		rs3798167-G	0.799907	2E-12		0.0362236	[0.026-0.046] unit increase	NR [11722792] (imputed)	N
1810	chr6	160567927	160567928	rs3798167	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very small VLDL	115,082 European ancestry individuals	NA	6q25.3		rs3798167-G	0.799907	3E-14		0.0379853	[0.028-0.048] unit increase	NR [11722792] (imputed)	N
1810	chr6	160567927	160567928	rs3798167	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium VLDL	115,082 European ancestry individuals	NA	6q25.3		rs3798167-G	0.799907	3E-14		0.0391688	[0.029-0.049] unit increase	NR [11722792] (imputed)	N
1810	chr6	160568895	160568896	rs654993	30369944	Balakrishnan P	2018-10-12	Front Genet	Genetic Variants Related to Cardiometabolic Traits Are Associated to B Cell Function, Insulin Resistance, and Diabetes Among AmeriCan Indians: The Strong Heart Family Study.	HOMA-B (corrected for HOMA-IR)	1,892 American Indian ancestry individuals	NA	6q25.3	SLC22A1	rs654993-?	0.23	8E-8		18.31	unit increase	Illumina [120975] (imputed)	N
1810	chr6	160569067	160569068	rs62440901	28512139	Mack S	2017-05-16	J Lipid Res	A genome-wide association meta-analysis on lipoprotein (a) concentrations adjusted for apolipoprotein (a) isoforms.	Lipoprotein (a) levels	13,781 European ancestry individuals	NA	6q25.3	LPA	rs62440901-T		3E-14		2.05	[1.26-2.84] mg/dL increase	Affymetrix, Illumina [at least 7600000] (imputed)	N
1810	chr6	160570113	160570114	rs9295123	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls	NA	6q25.3	SLC22A1	rs9295123-A	0.389246	1E-13		0.042763177	[0.031-0.054] unit decrease	Affymetrix [7288503] (imputed)	N
1810	chr6	160570113	160570114	rs9295123	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6q25.3	SLC22A1	rs9295123-A	0.4199396	5E-14	(Cation-independent mannose-6-phosphate receptor)	0.3313	[0.25-0.42] unit increase	Affymetrix [509946]	N
1810	chr6	160574801	160574802	rs1443844	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental extreme longevity (95 years and older)	1,339 middle-aged British cases, 40,934 middle-aged British controls	NA	6q25.3	NR	rs1443844-?	NR	9E-7		0.00429	[0.0026-0.006] unit decrease	Affymetrix [9658292] (imputed)	N
1810	chr6	160575201	160575202	rs3798164	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	6q25.3	NR	rs3798164-A	NR	2E-31		0.0284	[0.024-0.033] unit decrease	Affymetrix [9000000] (imputed)	N
1810	chr6	160575201	160575202	rs3798164	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	6q25.3	NR	rs3798164-A	NR	1E-39		0.032	[0.027-0.037] unit decrease	Affymetrix [9000000] (imputed)	N
1810	chr6	160575201	160575202	rs3798164	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs3798164-A	NR	4E-379		0.113	[0.11-0.12] unit decrease	Affymetrix [9000000] (imputed)	N
1810	chr6	160575201	160575202	rs3798164	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	6q25.3	NR	rs3798164-A	NR	3E-9		0.0144	[0.0097-0.0191] unit decrease	Affymetrix [9000000] (imputed)	N
1810	chr6	160575201	160575202	rs3798164	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	6q25.3	NR	rs3798164-A	NR	2E-18		0.0213	[0.017-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
1810	chr6	160575201	160575202	rs3798164	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	6q25.3	NR	rs3798164-A	NR	1E-19		0.0221	[0.017-0.027] unit increase	Affymetrix [9000000] (imputed)	N
1810	chr6	160575201	160575202	rs3798164	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	6q25.3	NR	rs3798164-A	NR	4E-35		0.0302	[0.025-0.035] unit decrease	Affymetrix [9000000] (imputed)	N
1810	chr6	160575365	160575366	rs11753995	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	6q25.3	SLC22A1	rs11753995-G	0.812659	7E-20	(suberoylcarnitine (C8-DC))	0.26	[0.21-0.31] unit decrease	Illumina [13039987] (imputed)	N
1810	chr6	160575365	160575366	rs11753995	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	6q25.3	SLC22A1	rs11753995-G	0.812659	6E-12	(butyrylcarnitine (C4))	0.201	[0.14-0.26] unit increase	Illumina [13039987] (imputed)	N
1810	chr6	160575365	160575366	rs11753995	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	6q25.3	NR	rs11753995-?	NR	6E-6		2.446161	[1.39-3.51] unit increase	Illumina [32003504] (imputed)	N
1810	chr6	160575365	160575366	rs11753995	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6q25.3	NR	rs11753995-G	NR	1E-15		0.047	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1810	chr6	160575365	160575366	rs11753995	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6q25.3	NR	rs11753995-G	0.836	1E-15	(EA)	0.05	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1810	chr6	160575365	160575366	rs11753995	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6q25.3	NR	rs11753995-G	NR	2E-15		0.048	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1810	chr6	160575365	160575366	rs11753995	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6q25.3	NR	rs11753995-G	0.836	5E-16	(EA)	0.052	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1810	chr6	160575984	160575985	rs2297374	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Citrate levels	115,068 European ancestry individuals	NA	6q25.3		rs2297374-C	0.625451	2E-8		0.0234073	[0.015-0.032] unit decrease	NR [11722792] (imputed)	N
1810	chr6	160575984	160575985	rs2297374	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	LDL cholesterol levels	up to 23,353 African ancestry individuals, 13,171 Asian ancestry individuals, up to 82,522 European ancestry individuals, 6,646 Hispanic individuals	NA	6q25.3		rs2297374-T	0.4004	5E-7		0.7807	[0.48-1.08] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1810	chr6	160575984	160575985	rs2297374	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6q25.3	NR	rs2297374-C	NR	7E-11		0.028	unit increase	Affymetrix [at least 7091467] (imputed)	N
1810	chr6	160575984	160575985	rs2297374	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6q25.3	NR	rs2297374-C	0.611	7E-14	(EA)	0.035	unit increase	Affymetrix [at least 7091467] (imputed)	N
1810	chr6	160575984	160575985	rs2297374	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6q25.3	NR	rs2297374-C	NR	2E-13		0.032	unit increase	Affymetrix [at least 7091467] (imputed)	N
1810	chr6	160575984	160575985	rs2297374	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6q25.3	NR	rs2297374-C	0.611	5E-16	(EA)	0.039	unit increase	Affymetrix [at least 7091467] (imputed)	N
1810	chr6	160575984	160575985	rs2297374	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	LDL cholesterol	up 62,166 European ancestry individuals	NA	6q25.3	LPA	rs2297374-C	0.64	5E-6		0.029	[0.017-0.041] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
1810	chr6	160577010	160577011	rs41267797	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs41267797-A	NR	1E-19		0.0932	[0.073-0.113] unit decrease	Affymetrix [9000000] (imputed)	N
1810	chr6	160578068	160578069	rs146534110	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	6q25.3	NR	rs146534110-T	NR	1E-16		0.0867	[0.066-0.107] unit increase	Affymetrix [9000000] (imputed)	N
1810	chr6	160578068	160578069	rs146534110	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	6q25.3	NR	rs146534110-T	NR	1E-18		0.0922	[0.072-0.113] unit increase	Affymetrix [9000000] (imputed)	N
1810	chr6	160578068	160578069	rs146534110	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs146534110-T	NR	2E-285		0.4336	[0.41-0.46] unit increase	Affymetrix [9000000] (imputed)	N
1810	chr6	160578068	160578069	rs146534110	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	6q25.3	NR	rs146534110-T	NR	2E-15		0.0829	[0.062-0.103] unit increase	Affymetrix [9000000] (imputed)	N
1810	chr6	160578068	160578069	rs146534110	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	6q25.3	SLC22A1	rs146534110-G	0.986696	9E-14		0.0679152	[0.05-0.086] unit decrease	Affymetrix [NR] (imputed)	N
1810	chr6	160578068	160578069	rs146534110	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	6q25.3	SLC22A1	rs146534110-G	0.986685	2E-13		0.0666046	[0.049-0.084] unit decrease	Affymetrix [NR] (imputed)	N
1810	chr6	160578859	160578860	rs1564348	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x short total sleep time interaction (2df test)	2,974 African American short sleepers, 365 Chinese ancestry short sleepers, 110 Asian ancestry short sleepers, at least 8,230 European ancestry short sleepers, 1,079 Hispanic/Latino short sleepers, 11,801 African American controls, 1,425 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,097 European ancestry controls, 4,023 Hispanic/Latino controls	at least 214 African American short sleepers, 629 East Asian ancestry short sleepers, up to 6,761 European ancestry short sleepers, 2,473 Hispanic short sleepers, at least 913 African American controls, 2,504 East Asian ancestry controls, up to 26,764 European ancestry controls, 9,854 Hispanic controls	6q25.3	SLC22A1	rs1564348-?	NR	2E-12		1.649	[1.15-2.14] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
1810	chr6	160578859	160578860	rs1564348	31566214	Kulminski AM	2019-09-30	J Gerontol A Biol Sci Med Sci	Quantitative and qualitative role of antagonistic heterogeneity in genetics of blood lipids.	Total cholesterol levels	29,902 European ancestry individuals	NA	6q25.3		rs1564348-C	0.16	1E-8		2.4	[1.58-3.22] unit increase	Affymetrix, Illumina [up to 2500000] (imputed)	N
1810	chr6	160578859	160578860	rs1564348	31566214	Kulminski AM	2019-09-30	J Gerontol A Biol Sci Med Sci	Quantitative and qualitative role of antagonistic heterogeneity in genetics of blood lipids.	Low density lipoprotein cholesterol levels	29,902 European ancestry individuals		6q25.3		rs1564348-C	0.16	2E-9		2.32	[1.56-3.08] unit increase	Affymetrix, Illumina [up to 2500000] (imputed)	N
1810	chr6	160578859	160578860	rs1564348	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	6q25.3	NR	rs1564348-?	NR	7E-7		2.416443	[1.46-3.37] unit increase	Illumina [32003504] (imputed)	N
1810	chr6	160578859	160578860	rs1564348	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	LDL cholesterol levels	up to 23,353 African ancestry individuals, 13,171 Asian ancestry individuals, up to 82,522 European ancestry individuals, 6,646 Hispanic individuals	NA	6q25.3		rs1564348-T	0.8439	1E-10		1.4621	[1.02-1.91] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1810	chr6	160578859	160578860	rs1564348	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6q25.3	NR	rs1564348-T	NR	1E-14		0.045	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1810	chr6	160578859	160578860	rs1564348	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6q25.3	NR	rs1564348-T	0.838	5E-15	(EA)	0.049	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1810	chr6	160578859	160578860	rs1564348	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6q25.3	NR	rs1564348-T	NR	6E-15		0.046	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1810	chr6	160578859	160578860	rs1564348	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6q25.3	NR	rs1564348-T	0.838	1E-15	(EA)	0.051	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1810	chr6	160578859	160578860	rs1564348	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	6q25.3	LPA	rs1564348-C	0.18	3E-21		0.048	[NR] unit increase	NR [NR] (imputed)	N
1810	chr6	160578859	160578860	rs1564348	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	6q25.3	LPA	rs1564348-C	0.18	3E-23		0.049	[NR] unit increase	NR [NR] (imputed)	N
1810	chr6	160578859	160578860	rs1564348	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	LDL cholesterol	95,454 European ancestry individuals	NA	6q25.3	LPA	rs1564348-C	0.17	2E-17		1.95	[1.48-2.42] mg/dL increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1810	chr6	160578859	160578860	rs1564348	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	Cholesterol, total	100,184 European ancestry individuals	NA	6q25.3	LPA	rs1564348-C	0.17	1E-16		2.18	[1.65-2.71] mg/dL increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1810	chr6	160581373	160581374	rs651164	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs651164-G	NR	5E-97		0.0612	[0.056-0.067] unit increase	Affymetrix [9000000] (imputed)	N
1810	chr6	160581373	160581374	rs651164	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	6q25.3	NR	rs651164-G	NR	1E-9		0.0159	[0.011-0.021] unit increase	Affymetrix [9000000] (imputed)	N
1810	chr6	160581373	160581374	rs651164	33293427	Emami NC	2020-12-08	Cancer Res	A large-scale association study detects novel rare variants, risk genes, functional elements, and polygenic architecture of prostate cancer susceptibility.	Prostate cancer	14,113 European ancestry cases, 194,140 European ancestry controls	NA	6q25.3	NR	rs651164-G	NR	2E-8		1.09	NR	Affymetrix [at least 232408] (imputed)	N
1810	chr6	160581373	160581374	rs651164	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Prostate cancer	10,792 European ancestry cases, 410,350 European ancestry controls	NA	6q25.3		rs651164-G	NR	3E-7		1.085305	NR	Affymetrix [7846216] (imputed)	N
1810	chr6	160581373	160581374	rs651164	21743057	Schumacher FR	2011-07-08	Hum Mol Genet	Genome-wide association study identifies new prostate cancer susceptibility loci.	Prostate cancer	2,782 European ancestry cases, 4,458 European ancestry controls	7,358 European ancestry cases, 6,732 European ancestry controls	6q25.3	SLC22A1	rs651164-G	NR	2E-10	(conditioned on rs9364554)	1.15	[1.10-1.20]	Illumina [571243]	N
1810	chr6	160581373	160581374	rs651164	19767753	Eeles RA	2009-09-20	Nat Genet	Identification of seven new prostate cancer susceptibility loci through a genome-wide association study.	Prostate cancer	1,854 European ancestry cases, 1,894 European ancestry controls	19,879 cases and 18,761 controls of European, East Asian, African American, Latino, and Hawaiian ancestry	6q25.3	NR	rs651164-?	NR	2E-9				Illumina [541129]	N
1810	chr6	160581501	160581502	rs4646283	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	6q25.3	NR	rs4646283-C	NR	3E-15		0.0268	[0.02-0.033] unit decrease	Affymetrix [9000000] (imputed)	N
1810	chr6	160581501	160581502	rs4646283	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	6q25.3	NR	rs4646283-C	NR	9E-19		0.0301	[0.023-0.037] unit decrease	Affymetrix [9000000] (imputed)	N
1810	chr6	160581501	160581502	rs4646283	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs4646283-C	NR	8E-29		0.042	[0.035-0.049] unit decrease	Affymetrix [9000000] (imputed)	N
1810	chr6	160581501	160581502	rs4646283	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	6q25.3	NR	rs4646283-C	NR	3E-19		0.0305	[0.024-0.037] unit decrease	Affymetrix [9000000] (imputed)	N
1810	chr6	160581543	160581543	rs4646284	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Prostate cancer	11,599 European ancestry cases, 199,628 European ancestry controls, 5,672 East Asian ancestry cases, 84,660 East Asian ancestry controls	NA	6q25.3		rs4646284-TG	NR	1E-25		0.1396	[0.11-0.17] unit increase	Affymetrix, Illumina [25775424] (imputed)	N
1810	chr6	160581543	160581543	rs4646284	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 91,972 European ancestry controls	6,852 European ancestry cases, 193,117 European ancestry controls	6q25.3	NR	rs4646284-TG	0.319856898	1E-26		1.2171053	[1.17-1.26]	Affymetrix, Illumina [20400945] (imputed)	N
1810	chr6	160581543	160581543	rs4646284	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	6q25.3	NR	rs4646284-TG	NR	6E-121		1.202	[1.18-1.22]	Affymetrix, Illumina [29235255] (imputed)	N
1810	chr6	160581543	160581543	rs4646284	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	10,368 African ancestry cases, 10,986 African ancestry controls	NA	6q25.3	NR	rs4646284-TG	0.365	3E-8		1.13	[1.08-1.18]	Affymetrix, Illumina [18877980] (imputed)	N
1810	chr6	160581543	160581543	rs4646284	26034056	Hoffmann TJ	2015-06-01	Cancer Discov	A large multiethnic genome-wide association study of prostate cancer identifies novel risk variants and substantial ethnic differences.	Prostate cancer	6,406 European ancestry cases, 601 African American cases, 288 East Asian ancestry cases, 488 Latino cases30,866 European ancestry controls, 1,650 African American controls, 2,938 East Asian ancestry controls, 3,141 Latino controls	4,599 European ancestry cases, 2,265 African American cases, 2,940 European ancestry controls, 2,414 African American controls	6q25.3	SLC22A2, SLC22A1	rs4646284-TG	0.298	1E-19		1.18	[1.14-1.22]	Affymetrix [up to 19977088] (imputed)	N
1810	chr6	160583731	160583732	rs12200363	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs12200363-C	NR	2E-26		0.0798	[0.065-0.095] unit increase	Affymetrix [9000000] (imputed)	N
1810	chr6	160595232	160595233	rs13209686	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	6q25.3	NR	rs13209686-C	NR	5E-9		0.0259	[0.017-0.035] unit decrease	Affymetrix [9000000] (imputed)	N
1810	chr6	160598595	160598596	rs9456508	29227965	Pilling LC	2017-12-01	Aging (Albany NY)	Human longevity: 25 genetic loci associated in 389,166 UK biobank participants.	Parental longevity (combined parental attained age, Martingale residuals)	389,166 British ancestry individuals	NA	6q25.3	NR	rs9456508-T	0.978225	4E-8		0.0425855	[0.028-0.058] unit decrease	Affymetrix [11535925] (imputed)	N
1810	chr6	160603131	160603132	rs117901488	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs117901488-T	NR	1E-314		0.2368	[0.22-0.25] unit increase	Affymetrix [9000000] (imputed)	N
1810	chr6	160603131	160603132	rs117901488	29317602	Hall LS	2018-01-10	Transl Psychiatry	Genome-wide meta-analyses of stratified depression in Generation Scotland and UK Biobank.	Recurrent major depressive disorder	7,345 European ancestry female cases, 32,211 European ancestry female controls	NA	6q25.3	intergenic	rs117901488-T	NR	6E-6		0.2	[0.12-0.28] unit increase	Affymetrix, Illumina [7105178] (imputed)	N
1810	chr6	160608803	160608804	rs16891156	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6q25.3		rs16891156-A	0.979649	1E-17		0.117859	[0.091-0.145] unit increase	NR [11722792] (imputed)	N
1810	chr6	160608803	160608804	rs16891156	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	6q25.3		rs16891156-A	0.979805	1E-46		0.2032	[0.18-0.23] unit increase	NR [11722792] (imputed)	N
1810	chr6	160608803	160608804	rs16891156	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	6q25.3		rs16891156-A	0.979645	2E-23		0.137099	[0.11-0.16] unit increase	NR [11722792] (imputed)	N
1810	chr6	160608803	160608804	rs16891156	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6q25.3		rs16891156-A	0.979649	3E-21		0.133447	[0.11-0.16] unit increase	NR [11722792] (imputed)	N
1810	chr6	160608803	160608804	rs16891156	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6q25.3		rs16891156-A	0.979649	1E-47		0.203614	[0.18-0.23] unit increase	NR [11722792] (imputed)	N
1810	chr6	160608803	160608804	rs16891156	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	6q25.3		rs16891156-A	0.979649	6E-27		0.148629	[0.12-0.18] unit increase	NR [11722792] (imputed)	N
1810	chr6	160608803	160608804	rs16891156	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6q25.3		rs16891156-A	0.979649	9E-26		0.144581	[0.12-0.17] unit increase	NR [11722792] (imputed)	N
1810	chr6	160608803	160608804	rs16891156	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	6q25.3		rs16891156-A	0.979649	9E-14		0.106522	[0.079-0.135] unit increase	NR [11722792] (imputed)	N
1810	chr6	160608803	160608804	rs16891156	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	6q25.3		rs16891156-A	0.979652	6E-10		0.089847	[0.061-0.118] unit increase	NR [11722792] (imputed)	N
1810	chr6	160608803	160608804	rs16891156	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	6q25.3		rs16891156-A	0.98011	2E-58		0.239947	[0.21-0.27] unit increase	NR [11722792] (imputed)	N
1810	chr6	160608803	160608804	rs16891156	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	6q25.3		rs16891156-A	0.979649	3E-12		0.097719	[0.07-0.125] unit increase	NR [11722792] (imputed)	N
1810	chr6	160608803	160608804	rs16891156	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large VLDL	115,082 European ancestry individuals	NA	6q25.3		rs16891156-A	0.979649	2E-79		0.26253	[0.24-0.29] unit increase	NR [11722792] (imputed)	N
1810	chr6	160608803	160608804	rs16891156	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large HDL	115,082 European ancestry individuals	NA	6q25.3		rs16891156-A	0.979649	8E-36		0.177709	[0.15-0.21] unit increase	NR [11722792] (imputed)	N
1810	chr6	160608803	160608804	rs16891156	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small LDL	115,082 European ancestry individuals	NA	6q25.3		rs16891156-A	0.979649	3E-66		0.242995	[0.22-0.27] unit increase	NR [11722792] (imputed)	N
1810	chr6	160608803	160608804	rs16891156	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium HDL	115,082 European ancestry individuals	NA	6q25.3		rs16891156-A	0.979649	6E-20		0.130979	[0.1-0.16] unit increase	NR [11722792] (imputed)	N
1810	chr6	160608803	160608804	rs16891156	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large VLDL	115,082 European ancestry individuals	NA	6q25.3		rs16891156-A	0.979649	1E-70		0.249016	[0.22-0.28] unit increase	NR [11722792] (imputed)	N
1810	chr6	160608803	160608804	rs16891156	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large HDL	115,082 European ancestry individuals	NA	6q25.3		rs16891156-A	0.979649	4E-9		0.0817323	[0.055-0.109] unit increase	NR [11722792] (imputed)	N
1810	chr6	160608803	160608804	rs16891156	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6q25.3		rs16891156-A	0.979649	3E-120		0.32758	[0.3-0.36] unit increase	NR [11722792] (imputed)	N
1810	chr6	160608803	160608804	rs16891156	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in VLDL	115,082 European ancestry individuals	NA	6q25.3		rs16891156-A	0.979649	4E-76		0.258512	[0.23-0.29] unit increase	NR [11722792] (imputed)	N
1810	chr6	160608803	160608804	rs16891156	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in HDL	115,082 European ancestry individuals	NA	6q25.3		rs16891156-A	0.979649	3E-23		0.141589	[0.11-0.17] unit increase	NR [11722792] (imputed)	N
1810	chr6	160608803	160608804	rs16891156	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total triglycerides levels	115,082 European ancestry individuals	NA	6q25.3		rs16891156-A	0.979649	2E-66		0.242105	[0.21-0.27] unit increase	NR [11722792] (imputed)	N
1810	chr6	160608803	160608804	rs16891156	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large VLDL	115,082 European ancestry individuals	NA	6q25.3		rs16891156-A	0.979649	2E-72		0.252224	[0.22-0.28] unit increase	NR [11722792] (imputed)	N
1810	chr6	160608803	160608804	rs16891156	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6q25.3		rs16891156-A	0.979649	3E-108		0.309903	[0.28-0.34] unit increase	NR [11722792] (imputed)	N
1810	chr6	160608803	160608804	rs16891156	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	6q25.3		rs16891156-A	0.97964	5E-60		0.220811	[0.19-0.25] unit increase	NR [11722792] (imputed)	N
1810	chr6	160608803	160608804	rs16891156	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	6q25.3		rs16891156-A	0.97964	2E-29		0.157939	[0.13-0.19] unit decrease	NR [11722792] (imputed)	N
1810	chr6	160608803	160608804	rs16891156	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to monounsaturated fatty acids	115,006 European ancestry individuals	NA	6q25.3		rs16891156-A	0.97964	7E-35		0.172178	[0.14-0.2] unit decrease	NR [11722792] (imputed)	N
1810	chr6	160608803	160608804	rs16891156	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	6q25.3		rs16891156-A	0.97964	9E-31		0.16136	[0.13-0.19] unit decrease	NR [11722792] (imputed)	N
1810	chr6	160608803	160608804	rs16891156	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of monounsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	6q25.3		rs16891156-A	0.97964	7E-35		0.172215	[0.14-0.2] unit increase	NR [11722792] (imputed)	N
1810	chr6	160608803	160608804	rs16891156	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of docosahexaenoic acid to total fatty acid levels	115,006 European ancestry individuals	NA	6q25.3		rs16891156-A	0.97964	2E-13		0.103296	[0.076-0.131] unit decrease	NR [11722792] (imputed)	N
1810	chr6	160608803	160608804	rs16891156	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6q25.3		rs16891156-A	0.979649	1E-17		0.118621	[0.091-0.146] unit decrease	NR [11722792] (imputed)	N
1810	chr6	160608803	160608804	rs16891156	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6q25.3		rs16891156-A	0.979649	2E-42		0.199025	[0.17-0.23] unit decrease	NR [11722792] (imputed)	N
1810	chr6	160608803	160608804	rs16891156	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6q25.3		rs16891156-A	0.979649	1E-9		0.0852925	[0.058-0.113] unit decrease	NR [11722792] (imputed)	N
1810	chr6	160608803	160608804	rs16891156	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large VLDL	115,082 European ancestry individuals	NA	6q25.3		rs16891156-A	0.979649	2E-70		0.249492	[0.22-0.28] unit increase	NR [11722792] (imputed)	N
1810	chr6	160608803	160608804	rs16891156	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6q25.3		rs16891156-A	0.979649	2E-96		0.291022	[0.26-0.32] unit increase	NR [11722792] (imputed)	N
1810	chr6	160608803	160608804	rs16891156	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycoprotein acetyls levels	115,082 European ancestry individuals	NA	6q25.3		rs16891156-A	0.979649	1E-12		0.1029	[0.075-0.131] unit increase	NR [11722792] (imputed)	N
1810	chr6	160608803	160608804	rs16891156	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	6q25.3		rs16891156-A	0.979805	2E-24		0.144618	[0.12-0.17] unit decrease	NR [11722792] (imputed)	N
1810	chr6	160608803	160608804	rs16891156	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6q25.3		rs16891156-A	0.979649	1E-19		0.125624	[0.098-0.153] unit decrease	NR [11722792] (imputed)	N
1810	chr6	160608803	160608804	rs16891156	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6q25.3		rs16891156-A	0.979649	1E-57		0.225021	[0.2-0.25] unit decrease	NR [11722792] (imputed)	N
1810	chr6	160608803	160608804	rs16891156	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6q25.3		rs16891156-A	0.979649	7E-21		0.130307	[0.1-0.16] unit decrease	NR [11722792] (imputed)	N
1810	chr6	160608803	160608804	rs16891156	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	6q25.3		rs16891156-A	0.979649	2E-52		0.211872	[0.18-0.24] unit decrease	NR [11722792] (imputed)	N
1810	chr6	160608803	160608804	rs16891156	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	6q25.3		rs16891156-A	0.979652	5E-8		0.0790037	[0.051-0.107] unit decrease	NR [11722792] (imputed)	N
1810	chr6	160608803	160608804	rs16891156	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	6q25.3		rs16891156-A	0.979649	2E-25		0.144624	[0.12-0.17] unit decrease	NR [11722792] (imputed)	N
1810	chr6	160608803	160608804	rs16891156	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	6q25.3		rs16891156-A	0.98011	4E-67		0.254482	[0.23-0.28] unit decrease	NR [11722792] (imputed)	N
1810	chr6	160608803	160608804	rs16891156	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	6q25.3		rs16891156-A	0.979649	5E-69		0.247674	[0.22-0.28] unit increase	NR [11722792] (imputed)	N
1810	chr6	160608803	160608804	rs16891156	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6q25.3		rs16891156-A	0.979649	5E-96		0.291341	[0.26-0.32] unit increase	NR [11722792] (imputed)	N
1810	chr6	160608803	160608804	rs16891156	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Degree of unsaturation	115,006 European ancestry individuals	NA	6q25.3		rs16891156-A	0.97964	1E-14		0.107148	[0.08-0.134] unit decrease	NR [11722792] (imputed)	N
1810	chr6	160608803	160608804	rs16891156	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large VLDL particles	115,082 European ancestry individuals	NA	6q25.3		rs16891156-A	0.979649	4E-67		0.242097	[0.21-0.27] unit increase	NR [11722792] (imputed)	N
1810	chr6	160608803	160608804	rs16891156	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of chylomicrons and extremely large VLDL particles	115,082 European ancestry individuals	NA	6q25.3		rs16891156-A	0.979649	9E-98		0.293517	[0.27-0.32] unit increase	NR [11722792] (imputed)	N
1810	chr6	160608803	160608804	rs16891156	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6q25.3		rs16891156-A	0.979649	4E-19		0.122508	[0.096-0.149] unit decrease	NR [11722792] (imputed)	N
1810	chr6	160608803	160608804	rs16891156	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	6q25.3		rs16891156-A	0.979805	2E-72		0.251597	[0.22-0.28] unit decrease	NR [11722792] (imputed)	N
1810	chr6	160608803	160608804	rs16891156	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6q25.3		rs16891156-A	0.979649	1E-19		0.130436	[0.1-0.16] unit decrease	NR [11722792] (imputed)	N
1810	chr6	160608803	160608804	rs16891156	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6q25.3		rs16891156-A	0.979649	5E-44		0.202933	[0.17-0.23] unit increase	NR [11722792] (imputed)	N
1810	chr6	160608803	160608804	rs16891156	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	6q25.3		rs16891156-A	0.979649	7E-17		0.119148	[0.091-0.147] unit decrease	NR [11722792] (imputed)	N
1810	chr6	160608803	160608804	rs16891156	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6q25.3		rs16891156-A	0.979649	1E-33		0.165135	[0.14-0.19] unit decrease	NR [11722792] (imputed)	N
1810	chr6	160608803	160608804	rs16891156	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	6q25.3		rs16891156-A	0.979649	2E-19		0.126757	[0.099-0.154] unit decrease	NR [11722792] (imputed)	N
1810	chr6	160608803	160608804	rs16891156	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	6q25.3		rs16891156-A	0.979652	2E-56		0.221077	[0.19-0.25] unit decrease	NR [11722792] (imputed)	N
1810	chr6	160608803	160608804	rs16891156	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	6q25.3		rs16891156-A	0.98011	1E-51		0.224945	[0.2-0.25] unit decrease	NR [11722792] (imputed)	N
1810	chr6	160608803	160608804	rs16891156	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6q25.3		rs16891156-A	0.979649	8E-84		0.272838	[0.25-0.3] unit increase	NR [11722792] (imputed)	N
1810	chr6	160608803	160608804	rs16891156	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6q25.3		rs16891156-A	0.979649	3E-18		0.119912	[0.093-0.147] unit decrease	NR [11722792] (imputed)	N
1810	chr6	160608803	160608804	rs16891156	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	6q25.3		rs16891156-A	0.979805	6E-65		0.238151	[0.21-0.27] unit decrease	NR [11722792] (imputed)	N
1810	chr6	160608803	160608804	rs16891156	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6q25.3		rs16891156-A	0.979649	5E-22		0.13656	[0.11-0.16] unit decrease	NR [11722792] (imputed)	N
1810	chr6	160608803	160608804	rs16891156	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	6q25.3		rs16891156-A	0.979649	1E-18		0.126855	[0.099-0.155] unit decrease	NR [11722792] (imputed)	N
1810	chr6	160608803	160608804	rs16891156	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6q25.3		rs16891156-A	0.979649	1E-30		0.15793	[0.13-0.18] unit decrease	NR [11722792] (imputed)	N
1810	chr6	160608803	160608804	rs16891156	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	6q25.3		rs16891156-A	0.979652	7E-45		0.200497	[0.17-0.23] unit decrease	NR [11722792] (imputed)	N
1810	chr6	160608803	160608804	rs16891156	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	6q25.3		rs16891156-A	0.98011	2E-66		0.254518	[0.23-0.28] unit decrease	NR [11722792] (imputed)	N
1810	chr6	160608803	160608804	rs16891156	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	6q25.3		rs16891156-A	0.979649	7E-13		0.1019	[0.074-0.13] unit decrease	NR [11722792] (imputed)	N
1810	chr6	160608803	160608804	rs16891156	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6q25.3		rs16891156-A	0.979649	2E-90		0.283005	[0.26-0.31] unit increase	NR [11722792] (imputed)	N
1810	chr6	160608803	160608804	rs16891156	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for VLDL particles	115,082 European ancestry individuals	NA	6q25.3		rs16891156-A	0.979649	3E-84		0.264266	[0.24-0.29] unit increase	NR [11722792] (imputed)	N
1810	chr6	160611255	160611256	rs791185	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs791185-C	NR	8E-63		0.0788	[0.07-0.088] unit increase	Affymetrix [9000000] (imputed)	N
1810	chr6	160611464	160611465	rs79370442	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	6q25.3	NR	rs79370442-A	NR	4E-9		0.0414	[0.028-0.055] unit decrease	Affymetrix [9000000] (imputed)	N
1810	chr6	160619679	160619680	rs3912160	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	6q25.3		rs3912160-T	0.951235	2E-10		0.0612044	[0.042-0.08] unit decrease	NR [11722792] (imputed)	N
1810	chr6	160619917	160619918	rs28495851	31729369	Howles SA	2019-11-15	Nat Commun	Genetic variants of calcium and vitamin D metabolism in kidney stone disease.	Kidney stones	6,536 British ancestry cases, 388,508 British ancestry controls	NA	6q25.3	SLC22A2	rs28495851-C	0.03	5E-9		1.35	[1.22-1.50]	Affymetrix [~ 8400000] (imputed)	N
1810	chr6	160622636	160622637	rs476235	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs476235-A	NR	4E-211		0.086	[0.081-0.091] unit increase	Affymetrix [9000000] (imputed)	N
1810	chr6	160622636	160622637	rs476235	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	6q25.3	NR	rs476235-A	NR	4E-15		0.0195	[0.015-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
1810	chr6	160622636	160622637	rs476235	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	6q25.3	NR	rs476235-A	NR	2E-16		0.0204	[0.016-0.025] unit increase	Affymetrix [9000000] (imputed)	N
1810	chr6	160624114	160624115	rs77648599	31729369	Howles SA	2019-11-15	Nat Commun	Genetic variants of calcium and vitamin D metabolism in kidney stone disease.	Kidney stones	6,536 British ancestry cases, 5,587 Japanese ancestry cases, 388,508 British ancestry controls, 28,870 Japanese ancestry controls	NA	6q25.3	SLC22A2	rs77648599-G	0.03	5E-10		1.3	[1.20-1.42]	Affymetrix, Illumina [~ 5000000] (imputed)	N
1810	chr6	160624347	160624347	rs141163734	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Urolithiasis	6,223 European ancestry cases, 482,123 European ancestry controls, 11,699 East Asian ancestry cases, 167,027 East Asian ancestry controls	NA	6q25.3		rs141163734-TCA	NR	5E-9		0.2016	[0.13-0.27] unit increase	Affymetrix, Illumina [25845211] (imputed)	N
1810	chr6	160624946	160624947	rs74495751	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	6q25.3		rs74495751-C	NR	1E-12		0.0405	[0.029-0.052] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
1810	chr6	160625298	160625299	rs147010904	28512139	Mack S	2017-05-16	J Lipid Res	A genome-wide association meta-analysis on lipoprotein (a) concentrations adjusted for apolipoprotein (a) isoforms.	Lipoprotein(a) levels adjusted for apolipoprotein(a) isoforms	13,781 European ancestry individuals	NA	6q25.3	LPA	rs147010904-T		9E-20		18.38	[14.89-21.87] unit increase	Affymetrix, Illumina [at least 7600000] (imputed)	N
1810	chr6	160631169	160631170	rs143520616	28512139	Mack S	2017-05-16	J Lipid Res	A genome-wide association meta-analysis on lipoprotein (a) concentrations adjusted for apolipoprotein (a) isoforms.	Lipoprotein (a) levels	13,781 European ancestry individuals	NA	6q25.3	LPA	rs143520616-T		5E-8		2.39	[0.05-4.73] mg/dL increase	Affymetrix, Illumina [at least 7600000] (imputed)	N
1810	chr6	160633106	160633107	rs12207180	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	6q25.3	SLC22A2	rs12207180-A	0.113	3E-92		0.0085	[0.0075-0.0095] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
1810	chr6	160633106	160633107	rs12207180	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	6q25.3	SLC22A2	rs12207180-A	0.119	1E-82		0.0085	[0.0075-0.0095] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
1810	chr6	160633106	160633107	rs12207180	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Chronic kidney disease	64,164 European and unknown ancestry cases, 561,055 European and unknown ancestry controls	NA	6q25.3	SLC22A2	rs12207180-A	0.11	1E-10		1.0877	[1.0603-1.1158]	Affymetrix, Illumina [9585923] (imputed)	N
1810	chr6	160633222	160633223	rs150856119	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	6q25.3		rs150856119-G	0.973214	3E-9		0.0735469	[0.049-0.098] unit decrease	NR [11722792] (imputed)	N
1810	chr6	160633222	160633223	rs150856119	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6q25.3		rs150856119-G	0.973221	4E-10		0.0802478	[0.055-0.105] unit decrease	NR [11722792] (imputed)	N
1810	chr6	160633222	160633223	rs150856119	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6q25.3		rs150856119-G	0.973221	2E-11		0.0869277	[0.062-0.112] unit decrease	NR [11722792] (imputed)	N
1810	chr6	160633222	160633223	rs150856119	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6q25.3		rs150856119-G	0.973221	6E-11		0.0841948	[0.059-0.109] unit decrease	NR [11722792] (imputed)	N
1810	chr6	160637238	160637239	rs596881	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	6q25.3	NR	rs596881-C	NR	3E-38		0.0495	[0.042-0.057] unit decrease	Affymetrix [9000000] (imputed)	N
1810	chr6	160637238	160637239	rs596881	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	6q25.3	NR	rs596881-C	NR	9E-40		0.0507	[0.043-0.058] unit increase	Affymetrix [9000000] (imputed)	N
1810	chr6	160645762	160645763	rs139737555	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6q25.3		rs139737555-G	0.991519	5E-8		0.123506	[0.079-0.168] unit decrease	NR [11722792] (imputed)	N
1810	chr6	160646221	160646222	rs3798158	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	6q25.3	NR	rs3798158-G	NR	6E-10		0.0328	[0.022-0.043] unit decrease	Affymetrix [9000000] (imputed)	N
1810	chr6	160646221	160646222	rs3798158	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs3798158-G	NR	1E-101		0.125	[0.11-0.14] unit decrease	Affymetrix [9000000] (imputed)	N
1810	chr6	160646221	160646222	rs3798158	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	6q25.3	NR	rs3798158-G	NR	3E-14		0.0422	[0.031-0.053] unit decrease	Affymetrix [9000000] (imputed)	N
1810	chr6	160648266	160648267	rs515140	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	6q25.3	SLC22A2	rs515140-T	0.202	4E-22		0.518	[0.33-0.71] ml/min/1.73m2 decrease	Affymetrix, Illumina [at least 5248638] (imputed)	N
1810	chr6	160654814	160654815	rs184091076	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	6q25.3		rs184091076-G	0.990522	2E-8		0.127246	[0.083-0.171] unit decrease	NR [11722792] (imputed)	N
1810	chr6	160657135	160657138	rs145590578	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in diabetes	70,762 European ancestry individuals, 20,967 African American individuals	NA	6q25.3	SLC22A2	rs145590578-A	0.115	5E-12		0.944	[0.68-1.21] unit decrease	Affymetrix [NR] (imputed)	N
1810	chr6	160660942	160660943	rs113187109	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6q25.3		rs113187109-T	0.99079	5E-8		0.124197	[0.08-0.169] unit increase	NR [11722792] (imputed)	N
1810	chr6	160661167	160661168	rs3101823	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	6q25.3	SLC22A2	rs3101823-T	0.8781	6E-39	(EA)	0.0079	[0.0067-0.0091] unit increase	Affymetrix [NR] (imputed)	N
1810	chr6	160668186	160668188	rs3219195	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	6q25.3		rs3219195-C	NR	4E-74		0.0456	[0.041-0.051] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
1810	chr6	160668388	160668389	rs2279463	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Creatinine levels	110,051 European ancestry individuals	NA	6q25.3		rs2279463-A	0.856666	3E-23		0.0501372	[0.04-0.06] unit decrease	NR [11722792] (imputed)	N
1810	chr6	160668388	160668389	rs2279463	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in non-diabetics	152,624 European ancestry individuals, 36,369 African American individuals	NA	6q25.3	SLC22A2	rs2279463-A	0.857	2E-27		0.803	[0.66-0.95] unit increase	Affymetrix [NR] (imputed)	N
1810	chr6	160668388	160668389	rs2279463	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	6q25.3	SLC22A2	rs2279463-A	0.88	2E-48		0.0075	[0.0065-0.0085] unit increase	Affymetrix [NR] (imputed)	N
1810	chr6	160668388	160668389	rs2279463	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Estimated glomerular filtration rate	8,261 African American individuals, 18,548 Hispanic/Latino individuals, 150 Asian ancestry individuals, 602 Native American ancestry individuals, 339 individuals	NA	6q25.3	NR	rs2279463-?	NR	8E-7		1.123259	[0.68-1.57] unit decrease	Illumina [30341014] (imputed)	N
1810	chr6	160668388	160668389	rs2279463	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	6q25.3	SLC22A2, SLC22A3	rs2279463-G	0.1016	6E-32		11.759	NR z score decrease	Illumina [26237160] (imputed)	N
1810	chr6	160668388	160668389	rs2279463	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Creatinine levels	69,591 European ancestry individuals	NA	6q25.3	SLC22A2	rs2279463-G	0.124407	1E-14		0.071368	[0.055-0.088] unit increase	Illumina [24961484] (imputed)	N
1810	chr6	160668388	160668389	rs2279463	28452372	Gorski M	2017-04-28	Sci Rep	1000 Genomes-based meta-analysis identifies 10 novel loci for kidney function.	Glomerular filtration rate (creatinine)	110,517 European ancestry individuals		6q25.3	SLC22A2	rs2279463-A	NR	1E-15		0.0118	[0.0091-0.0145] unit increase	Affymetrix, Illumina [up to 10971307] (imputed)	N
1810	chr6	160668388	160668389	rs2279463	26831199	Pattaro C	2016-01-21	Nat Commun	Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function.	Glomerular filtration rate in non diabetics (creatinine)	118,448 European ancestry individuals	36,433 European ancestry individuals	6q25.3	VEGFA	rs2279463-A	NR	7E-18		0.0119	[0.0092-0.0146] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1810	chr6	160668388	160668389	rs2279463	20383146	Kottgen A	2010-04-11	Nat Genet	New loci associated with kidney function and chronic kidney disease.	Chronic kidney disease	Up to 67,093 European ancestry individuals	Up to 22,982 European ancestry individuals	6q25.3	SLC22A2	rs2279463-G	0.12	6E-12	(eGFRcrea)	0.01	[0.009-0.017] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1810	chr6	160669080	160669081	rs316020	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	6q25.3	SLC22A2	rs316020-?	NR	3E-25				Affymetrix, Illumina [at least 5248638] (imputed)	N
1810	chr6	160669080	160669081	rs316020	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Glomerular filtration rate	143,658 Japanese ancestry individuals	NA	6q25.3	SLC22A2	rs316020-?	NR	7E-12		0.05738	[0.041-0.074] unit decrease novel	Illumina [6108953] (imputed)	N
1810	chr6	160669080	160669081	rs316020	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Creatinine levels	142,097 Japanese ancestry individuals	NA	6q25.3	SLC22A2	rs316020-?	NR	1E-11		0.0553	[0.039-0.071] unit increase novel	Illumina [6108953] (imputed)	N
1810	chr6	160669080	160669081	rs316020	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite ratios	Up to 5,591 European ancestry individuals	Up to 1,767 European ancestry individuals	6q25.3	SLC22A1	rs316020-A	0.09	3E-286	(X-12798/phenylalanine)	0.183	[0.17-0.19] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
1810	chr6	160669080	160669081	rs316020	23093944	Krumsiek J	2012-10-18	PLoS Genet	Mining the unknown: a systems approach to metabolite identification combining genetic and metabolic information.	Serum metabolite levels	1,678 European ancestry individuals	NA	6q25.3	SLC22A2	rs316020-?	NR	2E-72	(X-12798)	0.1748	[NR] unit decrease	Affymetrix [655658]	N
1810	chr6	160670281	160670282	rs316019	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	6q25.3	SLC22A1	rs316019-A	0.09	2E-259	(X-12798)	0.181	[0.17-0.19] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
1810	chr6	160671656	160671657	rs201919874	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	150,266 East Asian ancestry individuals	NA	6q25.3		rs201919874-A	0.005668	2E-22		0.189781	[0.15-0.23] unit increase	Illumina [13478778] (imputed)	N
1810	chr6	160675763	160675764	rs316009	27588450	Mahajan A	2016-09-01	Am J Hum Genet	Trans-ethnic Fine Mapping Highlights Kidney-Function Genes Linked to Salt Sensitivity.	Glomerular filtration rate	23,553 European ancestry individuals, 23,536 Japanese individuals, 16,325 Hispanic individuals, 8,224 African American individuals	NA	6q25.3	SLC22A2	rs316009-C	NR	1E-9		1.193	[0.82-1.57] unit decrease	Affymetrix, Illumina [at least 6581000] (imputed)	N
1810	chr6	160675763	160675764	rs316009	26831199	Pattaro C	2016-01-21	Nat Commun	Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function.	Glomerular filtration rate (creatinine)	133,413 European ancestry individuals	42,166 European ancestry individuals, up to 16,471 African ancestry individuals, up to 42,296 Asian ancestry individuals	6q25.3	SLC22A2	rs316009-T	0.1	4E-19	(EA)	0.0131	[0.01-0.016] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1810	chr6	160679399	160679400	rs624249	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	6q25.3	NR	rs624249-A	NR	8E-13		0.0174	[0.013-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
1810	chr6	160679399	160679400	rs624249	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	6q25.3	NR	rs624249-A	NR	1E-15		0.0195	[0.015-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
1810	chr6	160679399	160679400	rs624249	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs624249-A	NR	5E-463		0.1247	[0.12-0.13] unit decrease	Affymetrix [9000000] (imputed)	N
1810	chr6	160679399	160679400	rs624249	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	6q25.3	NR	rs624249-A	NR	7E-13		0.0175	[0.013-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
1810	chr6	160679399	160679400	rs624249	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	6q25.3	NR	rs624249-A	NR	8E-15		0.0189	[0.014-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
1810	chr6	160679656	160679656	rs8177505	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Creatinine levels	437,660 European ancestry individuals	NA	6q25.3		rs8177505-?	NR	3E-73		0.525088	[0.47-0.58] unit increase	NR [9800000] (imputed)	N
1810	chr6	160679656	160679656	rs8177505	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs8177505-AT	NR	1E-209		1.1949	[1.12-1.27] unit increase	Affymetrix [9000000] (imputed)	N
1810	chr6	160679656	160679656	rs8177505	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	6q25.3	NR	rs8177505-AT	NR	2E-53		0.5175	[0.45-0.58] unit decrease	Affymetrix [9000000] (imputed)	N
1810	chr6	160679656	160679656	rs8177505	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	6q25.3	NR	rs8177505-AT	NR	4E-54		0.5216	[0.46-0.59] unit increase	Affymetrix [9000000] (imputed)	N
1810	chr6	160681392	160681393	rs3127573	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	6q25.3	NR	rs3127573-G	NR	4E-22		0.0338	[0.027-0.041] unit increase	Affymetrix [9000000] (imputed)	N
1810	chr6	160681392	160681393	rs3127573	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	6q25.3	NR	rs3127573-G	NR	1E-32		0.0417	[0.035-0.049] unit increase	Affymetrix [9000000] (imputed)	N
1810	chr6	160681392	160681393	rs3127573	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs3127573-G	NR	1E-1539		0.3249	[0.32-0.33] unit increase	Affymetrix [9000000] (imputed)	N
1810	chr6	160681392	160681393	rs3127573	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	6q25.3	NR	rs3127573-G	NR	9E-20		0.0319	[0.025-0.039] unit increase	Affymetrix [9000000] (imputed)	N
1810	chr6	160681392	160681393	rs3127573	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	6q25.3	NR	rs3127573-G	NR	1E-62		0.0583	[0.051-0.065] unit decrease	Affymetrix [9000000] (imputed)	N
1810	chr6	160681392	160681393	rs3127573	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	6q25.3	NR	rs3127573-G	NR	2E-64		0.0593	[0.052-0.066] unit increase	Affymetrix [9000000] (imputed)	N
1810	chr6	160681392	160681393	rs3127573	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	6q25.3	NR	rs3127573-G	NR	8E-36		0.0438	[0.037-0.051] unit increase	Affymetrix [9000000] (imputed)	N
1810	chr6	160681392	160681393	rs3127573	20383145	Chambers JC	2010-04-11	Nat Genet	Genetic loci influencing kidney function and chronic kidney disease.	Creatinine levels	23,812 European ancestry individuals	16,626 European ancestry individuals	6q25.3	SLC22A2	rs3127573-G	0.13	7E-10		1.1	[0.8-1.4] % increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1810	chr6	160682653	160682654	rs16891266	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs16891266-A	NR	9E-160		0.2445	[0.23-0.26] unit decrease	Affymetrix [9000000] (imputed)	N
1810	chr6	160683380	160683381	rs316025	33290408	Ray D	2020-12-08	PLoS Genet	A powerful method for pleiotropic analysis under composite null hypothesis identifies novel shared loci between Type 2 Diabetes and Prostate Cancer.	Type 2 diabetes or prostate cancer (pleiotropy)	62,892 European ancestry T2D cases, 79,194 European ancestry PrCa cases, 659,536 European ancestry controls	NA	6q25.3	SLC22A2	rs316025-?		1E-12				Illumina [5041948] (imputed)	N
1811	chr6	160694597	160694598	rs111232411	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large VLDL	115,082 European ancestry individuals	NA	6q25.3		rs111232411-T	0.9913	1E-10		0.145296	[0.1-0.19] unit decrease	NR [11722792] (imputed)	N
1811	chr6	160694597	160694598	rs111232411	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium VLDL	115,082 European ancestry individuals	NA	6q25.3		rs111232411-T	0.9913	3E-11		0.151825	[0.11-0.2] unit decrease	NR [11722792] (imputed)	N
1811	chr6	160694597	160694598	rs111232411	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large VLDL	115,082 European ancestry individuals	NA	6q25.3		rs111232411-T	0.9913	4E-11		0.149172	[0.1-0.19] unit decrease	NR [11722792] (imputed)	N
1811	chr6	160694597	160694598	rs111232411	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6q25.3		rs111232411-T	0.9913	9E-10		0.138871	[0.094-0.183] unit decrease	NR [11722792] (imputed)	N
1811	chr6	160694597	160694598	rs111232411	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in VLDL	115,082 European ancestry individuals	NA	6q25.3		rs111232411-T	0.9913	2E-11		0.151673	[0.11-0.2] unit decrease	NR [11722792] (imputed)	N
1811	chr6	160694597	160694598	rs111232411	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total triglycerides levels	115,082 European ancestry individuals	NA	6q25.3		rs111232411-T	0.9913	1E-11		0.154171	[0.11-0.2] unit decrease	NR [11722792] (imputed)	N
1811	chr6	160694597	160694598	rs111232411	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large VLDL	115,082 European ancestry individuals	NA	6q25.3		rs111232411-T	0.9913	1E-10		0.146892	[0.1-0.19] unit decrease	NR [11722792] (imputed)	N
1811	chr6	160694597	160694598	rs111232411	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6q25.3		rs111232411-T	0.9913	7E-10		0.139679	[0.095-0.184] unit decrease	NR [11722792] (imputed)	N
1811	chr6	160694597	160694598	rs111232411	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6q25.3		rs111232411-T	0.9913	5E-8		0.128711	[0.083-0.175] unit increase	NR [11722792] (imputed)	N
1811	chr6	160694597	160694598	rs111232411	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6q25.3		rs111232411-T	0.9913	1E-10		0.145127	[0.1-0.19] unit decrease	NR [11722792] (imputed)	N
1811	chr6	160694597	160694598	rs111232411	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of chylomicrons and extremely large VLDL particles	115,082 European ancestry individuals	NA	6q25.3		rs111232411-T	0.9913	3E-10		0.141704	[0.097-0.186] unit decrease	NR [11722792] (imputed)	N
1811	chr6	160694597	160694598	rs111232411	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for VLDL particles	115,082 European ancestry individuals	NA	6q25.3		rs111232411-T	0.9913	2E-9		0.132113	[0.089-0.175] unit decrease	NR [11722792] (imputed)	N
1811	chr6	160697305	160697306	rs316036	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6q25.3	SLC22A2	rs316036-A	NR	2E-10		0.0179463	[0.012-0.023] unit increase	Affymetrix [321016] (imputed)	N
1811	chr6	160698573	160698574	rs77798339	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs77798339-A	NR	7E-165		0.3531	[0.33-0.38] unit decrease	Affymetrix [9000000] (imputed)	N
1811	chr6	160703327	160703328	rs3908804	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial squamous cell lung carcinoma	367 European ancestry cases, 31,563 European ancestry controls	NA	6q25.3	SLC22A2	rs3908804-A	0.042	2E-6		2.11	[1.55-2.88]	Illumina [7959153] (imputed)	N
1811	chr6	160712193	160712194	rs381194	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6q25.3	SLC22A2	rs381194-A	NR	1E-10		0.0181622	[0.013-0.024] unit decrease	Affymetrix [319769] (imputed)	N
1811	chr6	160712193	160712194	rs381194	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6q25.3	SLC22A2	rs381194-A	NR	8E-11		0.0182394	[0.013-0.024] unit decrease	Affymetrix [319769] (imputed)	N
1811	chr6	160712193	160712194	rs381194	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6q25.3	SLC22A2	rs381194-A	NR	1E-8		0.0163054	[0.011-0.022] unit decrease	Affymetrix [321169] (imputed)	N
1811	chr6	160712193	160712194	rs381194	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	6q25.3	NR	rs381194-G	0.528176	5E-8		0.0127199	[0.0078-0.0177] unit increase	Affymetrix [16585745] (imputed)	N
1811	chr6	160719592	160719593	rs368123	26785701	Wen W	2016-01-20	Sci Rep	Genome-wide association studies in East Asians identify new loci for waist-hip ratio and waist circumference.	Waist circumference	up to 44,609 East Asian individuals	up to 25,553 East Asian individuals, up to 230,044 individuals	6q25.3	SLC22A2	rs368123-G	0.3864196459149615	2E-7	(East Asian women)	0.03636	[0.023-0.05] unit increase	Affymetrix, Illumina [at least 1850000] (imputed)	N
1811	chr6	160719592	160719593	rs368123	26785701	Wen W	2016-01-20	Sci Rep	Genome-wide association studies in East Asians identify new loci for waist-hip ratio and waist circumference.	Waist circumference	up to 44,609 East Asian individuals	up to 25,553 East Asian individuals, up to 230,044 individuals	6q25.3	SLC22A2	rs368123-G	0.386	3E-8	(East Asian)	0.032	[0.02-0.044] unit increase	Affymetrix, Illumina [at least 1850000] (imputed)	N
1811	chr6	160727926	160727927	rs3030728	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6q25.3	SLC22A2	rs3030728-G	NR	2E-10		0.0178275	[0.012-0.023] unit increase	Affymetrix [321016] (imputed)	N
1811	chr6	160729658	160729659	rs11752961	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	6q25.3		rs11752961-C	NR	2E-8		0.0147	[0.0096-0.0198] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
1811	chr6	160736786	160736787	rs3125055	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	6q25.3	NR	rs3125055-?	NR	3E-6				Affymetrix [NR]	N
1811	chr6	160740239	160740240	rs401746	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	6q25.3	NR	rs401746-?	NR	6E-12		0.15119	[0.11-0.19] unit increase	Affymetrix [7794483] (imputed)	N
1811	chr6	160740239	160740240	rs401746	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	6q25.3	NR	rs401746-?	NR	2E-8	(male)	0.19635	[0.13-0.26] unit increase	Affymetrix [7794483] (imputed)	N
1811	chr6	160741621	160741622	rs3120139	21900290	Qi Q	2011-09-06	Eur Heart J	Genetic variants, plasma lipoprotein(a) levels, and risk of cardiovascular morbidity and mortality among two prospective cohorts of type 2 diabetes.	Lp (a) levels	1,450 European ancestry individuals	NA	6q25.3	SLC22A3	rs3120139-A	0.13	4E-9		0.32	[0.22-0.42] mg/dL increase	Illumina [~ 2500000] (imputed)	N
1811	chr6	160742368	160742369	rs421913	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs421913-T	NR	1E-16		0.0833	[0.064-0.103] unit decrease	Affymetrix [9000000] (imputed)	N
1811	chr6	160744405	160744406	rs7774140	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6q25.3	NR	rs7774140-?	NR	5E-6		4.564	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1811	chr6	160745750	160745751	rs384156	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	6q25.3		rs384156-A	0.3305	5E-8		0.081908114	[0.049-0.115] mmHg increase	Affymetrix, Illumina [242866] (imputed)	N
1811	chr6	160748464	160748465	rs2504959	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	6q25.3	NR	rs2504959-C	NR	7E-10		0.0191	[0.013-0.025] unit increase	Affymetrix [9000000] (imputed)	N
1811	chr6	160748464	160748465	rs2504959	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	6q25.3	NR	rs2504959-C	NR	3E-11		0.0197	[0.014-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
1811	chr6	160748464	160748465	rs2504959	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs2504959-C	NR	5E-204		0.0997	[0.093-0.106] unit decrease	Affymetrix [9000000] (imputed)	N
1811	chr6	160748464	160748465	rs2504959	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	6q25.3	NR	rs2504959-C	NR	5E-10		0.0184	[0.013-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
1811	chr6	160748464	160748465	rs2504959	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	6q25.3	NR	rs2504959-C	NR	2E-15		0.0235	[0.018-0.029] unit decrease	Affymetrix [9000000] (imputed)	N
1811	chr6	160751530	160751531	rs9295128	29227965	Pilling LC	2017-12-01	Aging (Albany NY)	Human longevity: 25 genetic loci associated in 389,166 UK biobank participants.	Parental longevity (combined parental attained age, Martingale residuals)	389,166 British ancestry individuals	NA	6q25.3	NR	rs9295128-G	0.983087	2E-11		0.0594745	[0.042-0.077] unit decrease	Affymetrix [11535925] (imputed)	N
1811	chr6	160751530	160751531	rs9295128	28753643	Yeo A	2017-07-28	PLoS One	Pharmacogenetic meta-analysis of baseline risk factors, pharmacodynamic, efficacy and tolerability endpoints from two large global cardiovascular outcomes trials for darapladib.	Lipoprotein phospholipase A2 activity in cardiovascular disease	22,156 European, Asian, African, Arabic, Native American, Pacific Islander and other ancestry	NA	6q25.3	intergenic	rs9295128-T	0.01694	4E-11		11.72	[8.25-15.19] (nmol/min/ml) increase	Affymetrix, Illumina [13572687] (imputed)	N
1811	chr6	160754459	160754460	rs11756060	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs11756060-T	NR	9E-79		0.1834	[0.16-0.2] unit decrease	Affymetrix [9000000] (imputed)	N
1811	chr6	160756735	160756736	rs12209517	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PLG	5,357 Icelandic ancestry individuals	NA	6q25.3		rs12209517-G	0.1193	1E-60		0.446149	[0.39-0.5] unit decrease	Illumina [7506463] (imputed)	N
1811	chr6	160765054	160765055	rs572889	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs572889-G	NR	3E-324		0.3196	[0.3-0.34] unit decrease	Affymetrix [9000000] (imputed)	N
1811	chr6	160765830	160765831	rs490275	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	6q25.3		rs490275-T	NR	2E-9		0.0134	[0.0091-0.0177] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
1811	chr6	160766769	160766770	rs622217	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	6q25.3	NR	rs622217-T	0.52	4E-24		0.019	[0.015-0.023] unit increase	Affymetrix [2446094] (imputed)	N
1811	chr6	160766769	160766770	rs622217	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	6q25.3	NR	rs622217-T	0.52	5E-8				Affymetrix [2446094] (imputed)	N
1811	chr6	160766769	160766770	rs622217	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	6q25.3	SLC22A3	rs622217-C	0.483931554092884	3E-10		0.0485	[0.033-0.064] unit decrease	NR [5035015] (imputed)	N
1811	chr6	160766769	160766770	rs622217	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	6q25.3	SLC22A3	rs622217-T	0.52	2E-10		1.05	[1.03-1.07]	Affymetrix, Illumina [NR] (imputed)	N
1811	chr6	160767848	160767849	rs520685	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6q25.3	SLC22A3	rs520685-A	NR	1E-9		0.0192985	[0.013-0.026] unit increase	Affymetrix [321016] (imputed)	N
1811	chr6	160767904	160767905	rs520829	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	6q25.3	NR	rs520829-G	0.475492	2E-16		0.0100721	[0.0075-0.0126] unit increase	Affymetrix [16578495] (imputed)	N
1811	chr6	160767904	160767905	rs520829	28512139	Mack S	2017-05-16	J Lipid Res	A genome-wide association meta-analysis on lipoprotein (a) concentrations adjusted for apolipoprotein (a) isoforms.	Lipoprotein (a) levels	13,781 European ancestry individuals	NA	6q25.3	LPA	rs520829-G		3E-29		3.58	[3.03-4.13] mg/dL decrease	Affymetrix, Illumina [at least 7600000] (imputed)	N
1811	chr6	160768859	160768860	rs551032	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycine levels	114,978 European ancestry individuals	NA	6q25.3		rs551032-T	0.543859	2E-9		0.0239929	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
1811	chr6	160768859	160768860	rs551032	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	6q25.3		rs551032-C	NR	9E-14		0.0175	[0.013-0.022] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
1811	chr6	160769422	160769423	rs555754	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6q25.3	SLC22A3	rs555754-A	NR	2E-15		0.0226311	[0.017-0.028] unit decrease	Affymetrix [321169] (imputed)	N
1811	chr6	160769422	160769423	rs555754	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	6q25.3	NR	rs555754-A	0.46775900000000004	2E-59		0.0182759	[0.016-0.021] unit increase	Affymetrix [16585854] (imputed)	N
1811	chr6	160769422	160769423	rs555754	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	6q25.3	NR	rs555754-A	0.46775900000000004	2E-36		0.0164673	[0.014-0.019] unit increase	Affymetrix [16585866] (imputed)	N
1811	chr6	160769422	160769423	rs555754	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	NA	6q25.3	SLC22A3	rs555754-G	0.5252	1E-11		0.1392	[0.099-0.179] unit increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1811	chr6	160769810	160769811	rs668871	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	6q25.3		rs668871-T	NR	2E-26		0.0181	[0.015-0.021] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1811	chr6	160769810	160769811	rs668871	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	6q25.3		rs668871-T	NR	2E-31		0.0155	[0.013-0.018] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1811	chr6	160769810	160769811	rs668871	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	6q25.3	SLC22A3	rs668871-T	0.4699	1E-27		0.0205	[0.017-0.024] unit increase	Affymetrix [18391927] (imputed)	N
1811	chr6	160769810	160769811	rs668871	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	6q25.3	NR	rs668871-T	0.46922600000000003	1E-111		0.0176137	[0.016-0.019] unit increase	Affymetrix [16582909] (imputed)	N
1811	chr6	160769810	160769811	rs668871	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	6q25.3	NR	rs668871-T	0.46922600000000003	2E-76		0.0161164	[0.014-0.018] unit increase	Affymetrix [16582965] (imputed)	N
1811	chr6	160769810	160769811	rs668871	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6q25.3	NR	rs668871-?	NR	6E-28				Affymetrix [~ 8270000] (imputed)	N
1811	chr6	160769810	160769811	rs668871	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	6q25.3		rs668871-?	NR	8E-30				NR [~ 8900000] (imputed)	N
1811	chr6	160769810	160769811	rs668871	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6q25.3		rs668871-?	NR	6E-38				NR [~ 8900000] (imputed)	N
1811	chr6	160769810	160769811	rs668871	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	6q25.3	NA	rs668871-T	0.469	7E-12		0.0134	[0.0095-0.0173] unit decrease	NR [~ 27400000] (imputed)	N
1811	chr6	160770311	160770312	rs474513	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	6q25.3	SLC22A3	rs474513-A	0.5169	8E-10		1.04	[1.03-1.05]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1811	chr6	160770311	160770312	rs474513	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	6q25.3	NR	rs474513-A	0.51	7E-11		0.0116	[0.0081-0.0151] unit increase	NR [~ 27400000] (imputed)	N
1811	chr6	160770917	160770918	rs501470	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	6q25.3	NR	rs501470-G	0.4559	2E-17		0.032	[0.025-0.039] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1811	chr6	160770917	160770918	rs501470	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	6q25.3	NR	rs501470-G	0.47545400000000004	3E-55		0.0166798	[0.014-0.019] unit increase	Affymetrix [16582621] (imputed)	N
1811	chr6	160770917	160770918	rs501470	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	6q25.3	NR	rs501470-G	0.47545400000000004	7E-40		0.0152025	[0.013-0.018] unit increase	Affymetrix [16582614] (imputed)	N
1811	chr6	160770917	160770918	rs501470	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	6q25.3	NR	rs501470-T	0.5037	2E-24		0.0174	[0.014-0.021] unit increase	NR [~ 27400000] (imputed)	N
1811	chr6	160771191	160771192	rs3120137	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GPC3	5,365 Icelandic ancestry individuals	NA	6q25.3		rs3120137-A	0.1272	3E-14		0.21078	[0.16-0.27] unit decrease	Illumina [7506463] (imputed)	N
1811	chr6	160771362	160771363	rs505870	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	6q25.3		rs505870-A	NR	2E-10		0.013	[0.0091-0.0169] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
1811	chr6	160771362	160771363	rs505870	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	6q25.3	NR	rs505870-A	0.48	5E-11		0.012	[0.0084-0.0156] unit decrease	NR [NR]	N
1811	chr6	160772841	160772842	rs539958	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body mass index and triglycerides (pairwise)	500,123 European ancestry individuals,16,962 East Asian, South Asian, Hispanic and African American ancestry individuals	NA	6q25.3	SLC22A3	rs539958-T	0.4831	1E-14				Affymetrix, Illumina [2331072] (imputed)	N
1811	chr6	160772841	160772842	rs539958	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body mass index and systole blood pressure (pairwise)	472,402 European ancestry individuals, 16,962 East Asian, South Asian, Hispanic and African American ancestry individuals	NA	6q25.3	SLC22A3	rs539958-T	0.4831	7E-10				Affymetrix, Illumina [2331072] (imputed)	N
1811	chr6	160772841	160772842	rs539958	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body mass index and coronary artery disease (pairwise)	464,176 European ancestry individuals, 59,353 East Asian, South Asian, Hispanic and African American ancestry individuals	NA	6q25.3	SLC22A3	rs539958-T	0.4831	3E-10				Affymetrix, Illumina [2331072] (imputed)	N
1811	chr6	160772841	160772842	rs539958	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body mass index and LDL-C (pairwise)	495,344 European ancestry individuals,16,962 East Asian, South Asian, Hispanic and African American ancestry individuals	NA	6q25.3	SLC22A3	rs539958-T	0.4831	2E-11				Affymetrix, Illumina [2331072] (imputed)	N
1811	chr6	160772841	160772842	rs539958	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body fat percentage and triglycerides (pairwise)	268,505 European ancestry individuals, 10,072 East Asian, South Asian and African American ancestry individuals	NA	6q25.3	SLC22A3	rs539958-T	0.4831	2E-12				Affymetrix, Illumina [2331072] (imputed)	N
1811	chr6	160772841	160772842	rs539958	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body fat percentage and LDL-C (pairwise)	263,726 European ancestry individuals, 10,061 East Asian, South Asian and African American ancestry individuals	NA	6q25.3	SLC22A3	rs539958-T	0.4831	5E-10				Affymetrix, Illumina [2331072] (imputed)	N
1811	chr6	160774440	160774441	rs486359	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	6q25.3		rs486359-C	0.285768	1E-14		0.0230071	[0.017-0.029] unit increase	Illumina [13479924] (imputed)	N
1811	chr6	160774485	160774486	rs487152	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	6q25.3	NA	rs487152-A	0.4973	3E-11		0.0108	[0.0077-0.0139] unit increase	NR [~ 27400000] (imputed)	N
1811	chr6	160774485	160774486	rs487152	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	6q25.3	NR	rs487152-C	NR	2E-12		0.018	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
1811	chr6	160774485	160774486	rs487152	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	6q25.3	SLC22A3	rs487152-A	0.49	2E-12		0.017	[0.013-0.021] unit increase	Illumina [6108953] (imputed)	N
1811	chr6	160775577	160775578	rs518295	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	6q25.3		rs518295-T	NR	3E-9		0.0116	[0.0079-0.0153] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1811	chr6	160776016	160776017	rs543159	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	6q25.3		rs543159-A	NR	2E-8		0.0364	[0.024-0.049] unit decrease	Affymetrix, Illumina [25845091] (imputed)	N
1811	chr6	160776016	160776017	rs543159	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	6q25.3	NR	rs543159-C	0.5203	1E-12		0.0324	[0.023-0.041] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1811	chr6	160776016	160776017	rs543159	30837465	Wittemans LBL	2019-03-05	Nat Commun	Assessing the causal association of glycine with risk of cardio-metabolic diseases.	Glycine levels	80,003 European ancestry individuals	NA	6q25.3	SLC22A3	rs543159-A	0.482	4E-10		0.035	[0.023-0.047] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1811	chr6	160776324	160776325	rs675162	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6q25.3	SLC22A3	rs675162-G	NR	2E-17		0.0239503	[0.018-0.029] unit increase	Affymetrix [321016] (imputed)	N
1811	chr6	160776531	160776532	rs2102503	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6q25.3	SLC22A3	rs2102503-G	0.206785	2E-9		0.016309874	[0.011-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1811	chr6	160776652	160776653	rs673736	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6q25.3	SLC22A3	rs673736-A	NR	2E-20		0.026199	[0.021-0.032] unit decrease	Affymetrix [319769] (imputed)	N
1811	chr6	160776652	160776653	rs673736	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6q25.3	SLC22A3	rs673736-A	NR	1E-20		0.0263075	[0.021-0.032] unit decrease	Affymetrix [319769] (imputed)	N
1811	chr6	160778638	160778639	rs394487	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6q25.3	SLC22A3	rs394487-T	NR	2E-11		0.021211	[0.015-0.027] unit decrease	Affymetrix [319769] (imputed)	N
1811	chr6	160778638	160778639	rs394487	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6q25.3	SLC22A3	rs394487-T	NR	5E-12		0.0217519	[0.016-0.028] unit decrease	Affymetrix [319769] (imputed)	N
1811	chr6	160778638	160778639	rs394487	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6q25.3	SLC22A3	rs394487-T	NR	4E-8		0.0175743	[0.011-0.024] unit decrease	Affymetrix [321169] (imputed)	N
1811	chr6	160779133	160779134	rs641990	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6q25.3	SLC22A3	rs641990-G	NR	5E-9		0.0179913	[0.012-0.024] unit decrease	Affymetrix [323123] (imputed)	N
1811	chr6	160779212	160779213	rs79907881	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs79907881-T	NR	6E-52		0.1331	[0.12-0.15] unit increase	Affymetrix [9000000] (imputed)	N
1811	chr6	160779212	160779213	rs79907881	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	6q25.3	NR	rs79907881-T	NR	9E-14		0.0618	[0.046-0.078] unit increase	Affymetrix [9000000] (imputed)	N
1811	chr6	160779212	160779213	rs79907881	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	6q25.3	NR	rs79907881-T	NR	2E-14		0.0634	[0.047-0.08] unit decrease	Affymetrix [9000000] (imputed)	N
1811	chr6	160779980	160779981	rs76596562	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs76596562-A	NR	2E-21		0.0845	[0.067-0.102] unit decrease	Affymetrix [9000000] (imputed)	N
1811	chr6	160782933	160782934	rs9364552	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	6q25.3	SLC22A3	rs9364552-?	NR	2E-10		0.019390795	[0.013-0.025] unit decrease	Illumina [27896057] (imputed)	N
1811	chr6	160787713	160787714	rs1605965	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	6q25.3		rs1605965-T	0.285817	3E-11		0.014885	[0.011-0.019] unit increase	Illumina [13479295] (imputed)	N
1811	chr6	160789295	160789296	rs402219	21493818	Shaw SY	2011-04-21	Circ Cardiovasc Genet	Genetic and clinical correlates of early-outgrowth colony-forming units.	Monocyte early outgrowth colony forming units	1,654 European ancestry individuals	NA	6q25.3	SLC22A, LPAL2, LPA	rs402219-G	0.3	6E-7		0.19	[0.11-0.27] unit increase	Affymetrix [~ 2500000] (imputed)	N
1811	chr6	160791369	160791370	rs3127574	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index x sex x age interaction (4df test)	up to 51,625 European ancestry men aged <50, up to 60,654 European ancestry women aged <50, up to 90,988 European ancestry men aged >50, up to 106,622 European ancestry women aged >50	NA	6q25.3	SLC22A3, MAS1, AIRN, IGF2R, SLC22A1, SLC22A2, LPAL2, LPA, PLG, LOC729603	rs3127574-C	0.51	3E-7				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1811	chr6	160791369	160791370	rs3127574	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index (age>50)	up to 90,988 European ancestry men, up to 106,622 European ancestry women	NA	6q25.3	SLC22A3, MAS1, AIRN, IGF2R, SLC22A1, SLC22A2, LPAL2, LPA, PLG, LOC729603	rs3127574-C	0.51	2E-8		0.019	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1811	chr6	160791369	160791370	rs3127574	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	6q25.3	SLC22A3, MAS1, AIRN, IGF2R, SLC22A1, SLC22A2, LPAL2, LPA, PLG, LOC729603	rs3127574-C	0.51	4E-6				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1811	chr6	160796057	160796058	rs1018234	28512139	Mack S	2017-05-16	J Lipid Res	A genome-wide association meta-analysis on lipoprotein (a) concentrations adjusted for apolipoprotein (a) isoforms.	Lipoprotein (a) levels	13,781 European ancestry individuals	NA	6q25.3	LPA	rs1018234-T		6E-16		2.49	[1.76-3.22] mg/dL decrease	Affymetrix, Illumina [at least 7600000] (imputed)	N
1811	chr6	160799245	160799246	rs12204009	28512139	Mack S	2017-05-16	J Lipid Res	A genome-wide association meta-analysis on lipoprotein (a) concentrations adjusted for apolipoprotein (a) isoforms.	Lipoprotein (a) levels	13,781 European ancestry individuals	NA	6q25.3	LPA	rs12204009-C		3E-51		32.86	[28.31-37.41] mg/dL increase	Affymetrix, Illumina [at least 7600000] (imputed)	N
1811	chr6	160803693	160803694	rs149302195	28512139	Mack S	2017-05-16	J Lipid Res	A genome-wide association meta-analysis on lipoprotein (a) concentrations adjusted for apolipoprotein (a) isoforms.	Lipoprotein(a) levels adjusted for apolipoprotein(a) isoforms	13,781 European ancestry individuals	NA	6q25.3	LPA	rs149302195-T		2E-17		10.14	[7.57-12.71] unit decrease	Affymetrix, Illumina [at least 7600000] (imputed)	N
1811	chr6	160820921	160820922	rs78439586	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Linoleic acid levels	115,006 European ancestry individuals	NA	6q25.3		rs78439586-G	0.941651	1E-8		0.0511793	[0.033-0.069] unit decrease	NR [11722792] (imputed)	N
1811	chr6	160820921	160820922	rs78439586	28512139	Mack S	2017-05-16	J Lipid Res	A genome-wide association meta-analysis on lipoprotein (a) concentrations adjusted for apolipoprotein (a) isoforms.	Lipoprotein(a) levels adjusted for apolipoprotein(a) isoforms	13,781 European ancestry individuals	NA	6q25.3	LPA	rs78439586-A		3E-29		5.91	[4.83-6.99] unit decrease	Affymetrix, Illumina [at least 7600000] (imputed)	N
1811	chr6	160820921	160820922	rs78439586	28512139	Mack S	2017-05-16	J Lipid Res	A genome-wide association meta-analysis on lipoprotein (a) concentrations adjusted for apolipoprotein (a) isoforms.	Lipoprotein (a) levels	13,781 European ancestry individuals	NA	6q25.3	LPA	rs78439586-A		1E-47		6.68	[5.38-7.98] mg/dL decrease	Affymetrix, Illumina [at least 7600000] (imputed)	N
1811	chr6	160820977	160820978	rs3105749	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6q25.3	NR	rs3105749-G	NR	4E-9		0.022	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1811	chr6	160820977	160820978	rs3105749	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6q25.3	NR	rs3105749-G	0.519	4E-8	(EA)	0.023	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1811	chr6	160820977	160820978	rs3105749	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6q25.3	NR	rs3105749-G	0.519	3E-6	(EA)	0.022	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1811	chr6	160820977	160820978	rs3105749	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6q25.3	NR	rs3105749-G	0.519	3E-6	(EA)	0.022	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1811	chr6	160822674	160822675	rs3105751	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6q25.3	SLC22A3	rs3105751-G	NR	2E-11		0.0206525	[0.015-0.027] unit increase	Affymetrix [319769] (imputed)	N
1811	chr6	160822674	160822675	rs3105751	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6q25.3	SLC22A3	rs3105751-G	NR	1E-11		0.0209011	[0.015-0.027] unit increase	Affymetrix [319769] (imputed)	N
1811	chr6	160822674	160822675	rs3105751	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6q25.3	SLC22A3	rs3105751-G	NR	2E-8		0.0176058	[0.012-0.024] unit increase	Affymetrix [321169] (imputed)	N
1811	chr6	160824027	160824028	rs2504916	22095909	Lange CM	2011-11-16	Hepatology	Serum ferritin levels are associated with a distinct phenotype of chronic hepatitis C poorly responding to pegylated interferon-alpha and ribavirin therapy.	Response to hepatitis C treatment	707 European ancestry cases	NA	6q25.3	SLC22A3	rs2504916-T	NR	2E-6		0.306	[0.18-0.43] ug/L increase	NR [NR]	N
1812	chr6	160828141	160828142	rs3918291	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	6q25.3	NR	rs3918291-C	NR	4E-30		0.1483	[0.12-0.17] unit increase	Affymetrix [9000000] (imputed)	N
1812	chr6	160828141	160828142	rs3918291	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	6q25.3	NR	rs3918291-C	NR	6E-34		0.158	[0.13-0.18] unit increase	Affymetrix [9000000] (imputed)	N
1812	chr6	160828141	160828142	rs3918291	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs3918291-C	NR	7E-1195		1.1669	[1.14-1.2] unit increase	Affymetrix [9000000] (imputed)	N
1812	chr6	160828141	160828142	rs3918291	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	6q25.3	NR	rs3918291-C	NR	1E-28		0.1447	[0.12-0.17] unit increase	Affymetrix [9000000] (imputed)	N
1812	chr6	160830549	160830550	rs544366796	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	6q25.3		rs544366796-C	0.989671	1E-10		0.133181	[0.093-0.174] unit increase	NR [11722792] (imputed)	N
1812	chr6	160830549	160830550	rs544366796	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6q25.3		rs544366796-C	0.989672	2E-13		0.152401	[0.11-0.19] unit decrease	NR [11722792] (imputed)	N
1812	chr6	160830549	160830550	rs544366796	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	6q25.3		rs544366796-C	0.989746	5E-14		0.151441	[0.11-0.19] unit decrease	NR [11722792] (imputed)	N
1812	chr6	160830549	160830550	rs544366796	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	6q25.3		rs544366796-C	0.989771	3E-47		0.2986	[0.26-0.34] unit decrease	NR [11722792] (imputed)	N
1812	chr6	160830549	160830550	rs544366796	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium VLDL particles	115,082 European ancestry individuals	NA	6q25.3		rs544366796-C	0.989672	7E-9		0.119307	[0.079-0.16] unit increase	NR [11722792] (imputed)	N
1812	chr6	160830549	160830550	rs544366796	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Myocardial infarction (PheCode 411.2)	8,528 European ancestry cases, 447,820 European ancestry controls	NA	6q25.3		rs544366796-G	0.009746	4E-10		0.52	[0.36-0.68] unit increase	NR [11842647] (imputed)	N
1812	chr6	160831795	160831796	rs151135411	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	6q25.3	NR	rs151135411-A	NR	3E-15		0.327	[0.25-0.41] unit increase	Affymetrix [9000000] (imputed)	N
1812	chr6	160831795	160831796	rs151135411	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	6q25.3	NR	rs151135411-A	NR	1E-17		0.355	[0.27-0.44] unit increase	Affymetrix [9000000] (imputed)	N
1812	chr6	160831795	160831796	rs151135411	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs151135411-A	NR	5E-42		1.0383	[0.89-1.19] unit increase	Affymetrix [9000000] (imputed)	N
1812	chr6	160831795	160831796	rs151135411	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	6q25.3	NR	rs151135411-A	NR	6E-15		0.3234	[0.24-0.4] unit increase	Affymetrix [9000000] (imputed)	N
1812	chr6	160833663	160833664	rs9364554	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Prostate cancer	7,438 White British ancestry cases, 118,206 White British ancestry controls	NA	6q25.3		rs9364554-?	NR	5E-10		1.12075	[1.08-1.16]	NR [680312]	N
1812	chr6	160833663	160833664	rs9364554	33293427	Emami NC	2020-12-08	Cancer Res	A large-scale association study detects novel rare variants, risk genes, functional elements, and polygenic architecture of prostate cancer susceptibility.	Prostate cancer	14,113 European ancestry cases, 194,140 European ancestry controls	NA	6q25.3	NR	rs9364554-T	NR	4E-12		1.11	NR	Affymetrix [at least 232408] (imputed)	N
1812	chr6	160833663	160833664	rs9364554	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	6q25.3	NR	rs9364554-T	0.28	5E-33		1.11	[1.09-1.13]	Illumina [20370935] (imputed)	N
1812	chr6	160833663	160833664	rs9364554	26034056	Hoffmann TJ	2015-06-01	Cancer Discov	A large multiethnic genome-wide association study of prostate cancer identifies novel risk variants and substantial ethnic differences.	Prostate cancer	6,406 European ancestry cases, 601 African American cases, 288 East Asian ancestry cases, 488 Latino cases30,866 European ancestry controls, 1,650 African American controls, 2,938 East Asian ancestry controls, 3,141 Latino controls	4,599 European ancestry cases, 2,265 African American cases, 2,940 European ancestry controls, 2,414 African American controls	6q25.3	SLC22A3	rs9364554-T	0.279	6E-12		1.14	[1.10-1.18]	Affymetrix [up to 19977088] (imputed)	N
1812	chr6	160833663	160833664	rs9364554	18264097	Eeles RA	2008-02-10	Nat Genet	Multiple newly identified loci associated with prostate cancer susceptibility.	Prostate cancer	1,854 European ancestry cases, 1,894 European ancestry controls	3,268 European ancestry cases, 3,366 European ancestry controls	6q25.3	SLC22A3	rs9364554-T	0.29	6E-10		1.17	[1.08-1.26]	Illumina [541129]	N
1812	chr6	160834514	160834515	rs12194182	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Prostate cancer	10,792 European ancestry cases, 410,350 European ancestry controls	NA	6q25.3		rs12194182-C	NR	4E-13		1.1188185	NR	Affymetrix [7846216] (imputed)	N
1812	chr6	160834514	160834515	rs12194182	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6q25.3		rs12194182-C	NR	1E-10		1.1210762	[1.08-1.16]	Affymetrix [7846216] (imputed)	N
1812	chr6	160838360	160838361	rs3106166	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	6q25.3	SLC22A3	rs3106166-G	0.463213	3E-11		0.014807621	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
1812	chr6	160838645	160838646	rs141463285	28512139	Mack S	2017-05-16	J Lipid Res	A genome-wide association meta-analysis on lipoprotein (a) concentrations adjusted for apolipoprotein (a) isoforms.	Lipoprotein(a) levels adjusted for apolipoprotein(a) isoforms	13,781 European ancestry individuals	NA	6q25.3	LPA	rs141463285-A		3E-15		17.96	[13.74-22.18] unit increase	Affymetrix, Illumina [at least 7600000] (imputed)	N
1812	chr6	160838645	160838646	rs141463285	28512139	Mack S	2017-05-16	J Lipid Res	A genome-wide association meta-analysis on lipoprotein (a) concentrations adjusted for apolipoprotein (a) isoforms.	Lipoprotein (a) levels	13,781 European ancestry individuals	NA	6q25.3	LPA	rs141463285-A		6E-18		24.12	[18.98-29.26] mg/dL increase	Affymetrix, Illumina [at least 7600000] (imputed)	N
1812	chr6	160840251	160840252	rs7758229	25939597	Berndt SI	2015-05-05	Nat Commun	Two susceptibility loci identified for prostate cancer aggressiveness.	Prostate cancer	4,600 European ancestry cases, 2,941 European ancestry controls	7,779 European ancestry cases, 7,623 European ancestry controls	6q25.3	SLC22A3	rs7758229-T	0.31	4E-12		1.15	[1.10-1.20]	Illumina [1531807] (imputed)	N
1812	chr6	160840251	160840252	rs7758229	21242260	Cui R	2011-01-17	Gut	Common variant in 6q26-q27 is associated with distal colon cancer in an Asian population.	Colorectal cancer	1,583 Japanese ancestry cases, 1,898 Japanese ancestry controls	4,584 Japanese ancestry cases, 225 Korean ancestry distal cases, 2,973 East Asian ancestry controls	6q25.3	SLC22A3	rs7758229-T	NR	8E-9	(distal colon cancer)	1.28	[1.18-1.39]	Illumina [391749]	N
1812	chr6	160841424	160841425	rs79692178	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs79692178-C	NR	2E-133		0.2651	[0.24-0.29] unit decrease	Affymetrix [9000000] (imputed)	N
1812	chr6	160842536	160842537	rs3123636	27262462	Teerlink CC	2016-06-04	Hum Genet	Genome-wide association of familial prostate cancer cases identifies evidence for a rare segregating haplotype at 8q24.21.	Prostate cancer	2,511 European ancestry cases, 1,382 European ancestry controls	NA	6q25.3	SLC22A3	rs3123636-C	0.356	3E-9		1.37	[1.23-1.51]	Illumina [~ 9400000] (imputed)	N
1812	chr6	160842570	160842571	rs75374409	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs75374409-T	NR	7E-22		0.0918	[0.073-0.11] unit increase	Affymetrix [9000000] (imputed)	N
1812	chr6	160844537	160844537	rs746541017	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	6q25.3		rs746541017-CTTA,rs746541017-CTTA	0.0105004	8E-10		0.142344	[0.097-0.188] unit increase	NR [11722792] (imputed)	N
1812	chr6	160844537	160844537	rs746541017	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	6q25.3		rs746541017-CTTA,rs746541017-CTTA	0.0105004	8E-10		0.142344	[0.097-0.188] unit increase	NR [11722792] (imputed)	N
1812	chr6	160847570	160847571	rs117446263	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in VLDL	115,082 European ancestry individuals	NA	6q25.3		rs117446263-G	0.97527	2E-9		0.077773	[0.052-0.103] unit increase	NR [11722792] (imputed)	N
1812	chr6	160847570	160847571	rs117446263	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total fatty acid levels	115,006 European ancestry individuals	NA	6q25.3		rs117446263-G	0.97528	2E-8		0.0736988	[0.048-0.099] unit increase	NR [11722792] (imputed)	N
1812	chr6	160847570	160847571	rs117446263	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Saturated fatty acid levels	115,006 European ancestry individuals	NA	6q25.3		rs117446263-G	0.97528	3E-8		0.0729443	[0.047-0.099] unit increase	NR [11722792] (imputed)	N
1812	chr6	160847570	160847571	rs117446263	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large VLDL	115,082 European ancestry individuals	NA	6q25.3		rs117446263-G	0.97527	3E-8		0.0707012	[0.046-0.096] unit increase	NR [11722792] (imputed)	N
1812	chr6	160847570	160847571	rs117446263	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Monounsaturated fatty acid levels	115,006 European ancestry individuals	NA	6q25.3		rs117446263-G	0.97528	4E-9		0.0770597	[0.051-0.103] unit increase	NR [11722792] (imputed)	N
1812	chr6	160847570	160847571	rs117446263	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large VLDL particles	115,082 European ancestry individuals	NA	6q25.3		rs117446263-G	0.97527	5E-9		0.0749379	[0.05-0.1] unit increase	NR [11722792] (imputed)	N
1812	chr6	160847570	160847571	rs117446263	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	6q25.3		rs117446263-G	0.97527	2E-8		0.0728896	[0.047-0.098] unit increase	NR [11722792] (imputed)	N
1812	chr6	160847570	160847571	rs117446263	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	6q25.3	NR	rs117446263-A	NR	1E-9		0.0475	[0.032-0.063] unit increase	Affymetrix [9000000] (imputed)	N
1812	chr6	160847570	160847571	rs117446263	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	6q25.3	NR	rs117446263-A	NR	1E-13		0.0579	[0.043-0.073] unit increase	Affymetrix [9000000] (imputed)	N
1812	chr6	160847570	160847571	rs117446263	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs117446263-A	NR	1E-1727		0.7704	[0.75-0.79] unit increase	Affymetrix [9000000] (imputed)	N
1812	chr6	160847570	160847571	rs117446263	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	6q25.3	NR	rs117446263-A	NR	1E-14		0.0606	[0.045-0.076] unit increase	Affymetrix [9000000] (imputed)	N
1812	chr6	160848742	160848743	rs9457925	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (mother's age at death or mother's attained age)	up to 699,000 individuals	NA	6q25.3	NR	rs9457925-G	NR	2E-6				Illumina [458525]	N
1812	chr6	160848742	160848743	rs9457925	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (father's age at death)	309,383 European ancestry individuals	NA	6q25.3	LPA	rs9457925-A	0.02	4E-12		0.06608	[0.047-0.085] unit decrease	Illumina [541614]	N
1812	chr6	160848742	160848743	rs9457925	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	6q25.3	NR	rs9457925-?		2E-17	(LPA)	1.614	[NR] unit increase	Illumina [NR]	N
1812	chr6	160851765	160851766	rs376563	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6q25.3	NR	rs376563-T	0.481	1E-6	(EA)	0.02	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1812	chr6	160854190	160854191	rs76749178	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs76749178-C	NR	2E-10		0.052	[0.036-0.068] unit increase	Affymetrix [9000000] (imputed)	N
1812	chr6	160856842	160856843	rs9365164	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6q25.3	SLC22A3	rs9365164-T	NR	1E-12		0.0205159	[0.015-0.026] unit increase	Affymetrix [319769] (imputed)	N
1812	chr6	160856842	160856843	rs9365164	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6q25.3	SLC22A3	rs9365164-T	NR	8E-13		0.0206217	[0.015-0.026] unit increase	Affymetrix [319769] (imputed)	N
1812	chr6	160856842	160856843	rs9365164	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6q25.3	SLC22A3	rs9365164-T	NR	1E-10		0.0187831	[0.013-0.024] unit increase	Affymetrix [321169] (imputed)	N
1812	chr6	160856842	160856843	rs9365164	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	6q25.3		rs9365164-?	NR	6E-8				NR [~ 8900000] (imputed)	N
1812	chr6	160857192	160857193	rs74907759	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs74907759-G	NR	1E-20		0.1168	[0.092-0.141] unit decrease	Affymetrix [9000000] (imputed)	N
1812	chr6	160857786	160857787	rs115325990	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs115325990-G	NR	7E-22		0.1585	[0.13-0.19] unit increase	Affymetrix [9000000] (imputed)	N
1812	chr6	160858174	160858175	rs145082363	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs145082363-A	NR	2E-12		0.3383	[0.24-0.43] unit decrease	Affymetrix [9000000] (imputed)	N
1812	chr6	160858187	160858188	rs2292334	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6q25.3	SLC22A3	rs2292334-A	NR	2E-10		0.0182351	[0.013-0.024] unit decrease	Affymetrix [321016] (imputed)	N
1812	chr6	160858187	160858188	rs2292334	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	6q25.3	SLC22A3	rs2292334-A	0.389658	2E-11		0.015319709	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1812	chr6	160858187	160858188	rs2292334	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	6q25.3	SLC22A3	rs2292334-A	0.389667	3E-9		0.013476747	[0.009-0.0179] unit decrease	Affymetrix [93095623] (imputed)	N
1812	chr6	160858187	160858188	rs2292334	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	6q25.3	NR	rs2292334-A	0.385767	3E-12		0.013385	[0.0096-0.0171] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1812	chr6	160862808	160862809	rs189821701	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6q25.3	PLG	rs189821701-T	0.007	2E-33	(Angiostatin, PLG.3710.49.2)	1.87	[1.56-2.18] unit decrease	Affymetrix [10572788] (imputed)	N
1812	chr6	160862808	160862809	rs189821701	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	6q25.3	NR	rs189821701-?	NR	5E-7		0.4656	[0.28-0.65] unit increase	Illumina [at least 560000] (imputed)	N
1812	chr6	160863531	160863532	rs2048327	24262325	Dichgans M	2013-11-21	Stroke	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Coronary artery disease	33,398 cases, 75,726 controls	NA	6q25.3	SLC22A3, LPAL2, LPA	rs2048327-C	NR	1E-6		1.07	[1.05-1.10]	Illumina [575000] (imputed)	N
1812	chr6	160864757	160864758	rs8187722	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs8187722-G	NR	9E-22		0.3579	[0.28-0.43] unit increase	Affymetrix [9000000] (imputed)	N
1812	chr6	160865644	160865645	rs7769879	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q25.3	NR	rs7769879-C	0.391554	2E-11				Affymetrix, Illumina [23467995] (imputed)	N
1812	chr6	160865644	160865645	rs7769879	28512139	Mack S	2017-05-16	J Lipid Res	A genome-wide association meta-analysis on lipoprotein (a) concentrations adjusted for apolipoprotein (a) isoforms.	Lipoprotein(a) levels adjusted for apolipoprotein(a) isoforms	13,781 European ancestry individuals	NA	6q25.3	LPA	rs7769879-C		4E-168		6.74	[6.27-7.21] unit increase	Affymetrix, Illumina [at least 7600000] (imputed)	N
1812	chr6	160867271	160867272	rs143665477	28512139	Mack S	2017-05-16	J Lipid Res	A genome-wide association meta-analysis on lipoprotein (a) concentrations adjusted for apolipoprotein (a) isoforms.	Lipoprotein (a) levels	13,781 European ancestry individuals	NA	6q25.3	LPA	rs143665477-C		3E-41		39.71	[34.59-44.83] mg/dL increase	Affymetrix, Illumina [at least 7600000] (imputed)	N
1812	chr6	160868700	160868701	rs2457574	28512139	Mack S	2017-05-16	J Lipid Res	A genome-wide association meta-analysis on lipoprotein (a) concentrations adjusted for apolipoprotein (a) isoforms.	Lipoprotein (a) levels	13,781 European ancestry individuals	NA	6q25.3	LPA	rs2457574-A		3E-63		4.75	[4.21-5.29] mg/dL decrease	Affymetrix, Illumina [at least 7600000] (imputed)	N
1812	chr6	160874031	160874032	rs112376176	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small VLDL	115,082 European ancestry individuals	NA	6q25.3		rs112376176-C	0.959116	4E-12		0.0698536	[0.05-0.09] unit decrease	NR [11722792] (imputed)	N
1812	chr6	160874031	160874032	rs112376176	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	6q25.3	NR	rs112376176-T	NR	6E-16		0.0493	[0.037-0.061] unit increase	Affymetrix [9000000] (imputed)	N
1812	chr6	160874031	160874032	rs112376176	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs112376176-T	NR	7E-407		0.2862	[0.27-0.3] unit decrease	Affymetrix [9000000] (imputed)	N
1812	chr6	160874031	160874032	rs112376176	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	6q25.3	NR	rs112376176-T	NR	1E-9		0.0389	[0.026-0.051] unit decrease	Affymetrix [9000000] (imputed)	N
1812	chr6	160874676	160874677	rs58364041	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs58364041-A	NR	8E-163		0.2628	[0.24-0.28] unit decrease	Affymetrix [9000000] (imputed)	N
1812	chr6	160878077	160878078	rs149565105	26377243	Li J	2015-09-17	J Hum Genet	Genome- and exome-wide association study of serum lipoprotein (a) in the Jackson Heart Study.	Lipoprotein (a) levels	2,895 African American individuals	NA	6q25.3	SLC22A1, SLC22A2, SLC22A3	rs149565105-A	0.02	2E-34		0.78	[0.66-0.9] unit increase	Affymetrix [up to 38000000] (imputed)	N
1812	chr6	160879144	160879145	rs182980975	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs182980975-T	NR	3E-160		0.4037	[0.37-0.43] unit decrease	Affymetrix [9000000] (imputed)	N
1812	chr6	160889897	160889898	rs185414370	26377243	Li J	2015-09-17	J Hum Genet	Genome- and exome-wide association study of serum lipoprotein (a) in the Jackson Heart Study.	Lipoprotein (a) levels	2,895 African American individuals	NA	6q25.3	LPL2	rs185414370-C	0.03	3E-40		0.82	[0.7-0.94] unit increase	Affymetrix [up to 38000000] (imputed)	N
1812	chr6	160893166	160893167	rs6902316	28512139	Mack S	2017-05-16	J Lipid Res	A genome-wide association meta-analysis on lipoprotein (a) concentrations adjusted for apolipoprotein (a) isoforms.	Lipoprotein (a) levels	13,781 European ancestry individuals	NA	6q25.3	LPA	rs6902316-G		4E-29		19.15	[15.85-22.45] mg/dL increase	Affymetrix, Illumina [at least 7600000] (imputed)	N
1812	chr6	160894877	160894878	rs1510224	29227965	Pilling LC	2017-12-01	Aging (Albany NY)	Human longevity: 25 genetic loci associated in 389,166 UK biobank participants.	Parental longevity (combined parental attained age, Martingale residuals)	389,166 British ancestry individuals	NA	6q25.3	NR	rs1510224-T	0.981542	4E-11		0.0553182	[0.039-0.072] unit decrease	Affymetrix [11535925] (imputed)	N
1812	chr6	160894877	160894878	rs1510224	28512139	Mack S	2017-05-16	J Lipid Res	A genome-wide association meta-analysis on lipoprotein (a) concentrations adjusted for apolipoprotein (a) isoforms.	Lipoprotein (a) levels	13,781 European ancestry individuals	NA	6q25.3	LPA	rs1510224-C		4E-160		45.84	[43.65-48.03] mg/dL increase	Affymetrix, Illumina [at least 7600000] (imputed)	N
1812	chr6	160899137	160899138	rs118133674	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs118133674-A	NR	3E-422		0.4121	[0.39-0.43] unit increase	Affymetrix [9000000] (imputed)	N
1812	chr6	160903910	160903911	rs12207325	28512139	Mack S	2017-05-16	J Lipid Res	A genome-wide association meta-analysis on lipoprotein (a) concentrations adjusted for apolipoprotein (a) isoforms.	Lipoprotein(a) levels adjusted for apolipoprotein(a) isoforms	13,781 European ancestry individuals	NA	6q25.3	LPA	rs12207325-A		3E-37		14.8	[11.9-17.7] unit decrease	Affymetrix, Illumina [at least 7600000] (imputed)	N
1812	chr6	160906921	160906922	rs13213129	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs13213129-T	NR	2E-188		0.1902	[0.18-0.2] unit decrease	Affymetrix [9000000] (imputed)	N
1812	chr6	160909067	160909068	rs62441873	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs62441873-A	NR	1E-19		0.1723	[0.14-0.21] unit decrease	Affymetrix [9000000] (imputed)	N
1812	chr6	160910281	160910282	rs9457927	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in IDL	115,082 European ancestry individuals	NA	6q25.3		rs9457927-A	0.981807	4E-8		0.0851107	[0.055-0.116] unit increase	NR [11722792] (imputed)	N
1812	chr6	160910516	160910517	rs12214416	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	6q25.3	LPAL2	rs12214416-A	0.048	9E-7		0.069	[0.042-0.096] unit decrease	Affymetrix [7947838] (imputed)	N
1812	chr6	160910516	160910517	rs12214416	21900290	Qi Q	2011-09-06	Eur Heart J	Genetic variants, plasma lipoprotein(a) levels, and risk of cardiovascular morbidity and mortality among two prospective cohorts of type 2 diabetes.	Lp (a) levels	1,450 European ancestry individuals	NA	6q25.3	LPAL2	rs12214416-A	0.04	5E-8		0.5	[0.32-0.68] mg/dL decrease	Illumina [~ 2500000] (imputed)	N
1812	chr6	160911595	160911596	rs147555597	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	VLDL cholesterol levels	115,082 European ancestry individuals	NA	6q25.3		rs147555597-G	0.99045	3E-8		0.119242	[0.077-0.161] unit increase	NR [11722792] (imputed)	N
1812	chr6	160911595	160911596	rs147555597	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	6q25.3		rs147555597-G	0.990507	4E-26		0.220922	[0.18-0.26] unit increase	NR [11722792] (imputed)	N
1812	chr6	160911595	160911596	rs147555597	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6q25.3		rs147555597-G	0.99045	4E-10		0.129834	[0.089-0.171] unit increase	NR [11722792] (imputed)	N
1812	chr6	160911595	160911596	rs147555597	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6q25.3		rs147555597-G	0.99045	7E-20		0.188998	[0.15-0.23] unit increase	NR [11722792] (imputed)	N
1812	chr6	160911595	160911596	rs147555597	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	6q25.3		rs147555597-G	0.99045	4E-8		0.112166	[0.072-0.152] unit increase	NR [11722792] (imputed)	N
1812	chr6	160911595	160911596	rs147555597	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6q25.3		rs147555597-G	0.99045	2E-13		0.149533	[0.11-0.19] unit increase	NR [11722792] (imputed)	N
1812	chr6	160911595	160911596	rs147555597	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	6q25.3		rs147555597-G	0.990565	1E-38		0.283966	[0.24-0.33] unit increase	NR [11722792] (imputed)	N
1812	chr6	160911595	160911596	rs147555597	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large VLDL	115,082 European ancestry individuals	NA	6q25.3		rs147555597-G	0.99045	6E-30		0.233395	[0.19-0.27] unit increase	NR [11722792] (imputed)	N
1812	chr6	160911595	160911596	rs147555597	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large HDL	115,082 European ancestry individuals	NA	6q25.3		rs147555597-G	0.99045	5E-15		0.164426	[0.12-0.21] unit increase	NR [11722792] (imputed)	N
1812	chr6	160911595	160911596	rs147555597	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small VLDL	115,082 European ancestry individuals	NA	6q25.3		rs147555597-G	0.99045	5E-13		0.149914	[0.11-0.19] unit increase	NR [11722792] (imputed)	N
1812	chr6	160911595	160911596	rs147555597	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small LDL	115,082 European ancestry individuals	NA	6q25.3		rs147555597-G	0.99045	5E-23		0.205897	[0.17-0.25] unit increase	NR [11722792] (imputed)	N
1812	chr6	160911595	160911596	rs147555597	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium VLDL	115,082 European ancestry individuals	NA	6q25.3		rs147555597-G	0.99045	7E-18		0.179883	[0.14-0.22] unit increase	NR [11722792] (imputed)	N
1812	chr6	160911595	160911596	rs147555597	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium LDL	115,082 European ancestry individuals	NA	6q25.3		rs147555597-G	0.99045	5E-11		0.137898	[0.097-0.179] unit increase	NR [11722792] (imputed)	N
1812	chr6	160911595	160911596	rs147555597	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large VLDL	115,082 European ancestry individuals	NA	6q25.3		rs147555597-G	0.99045	2E-27		0.223901	[0.18-0.26] unit increase	NR [11722792] (imputed)	N
1812	chr6	160911595	160911596	rs147555597	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6q25.3		rs147555597-G	0.99045	4E-49		0.305124	[0.26-0.35] unit increase	NR [11722792] (imputed)	N
1812	chr6	160911595	160911596	rs147555597	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in VLDL	115,082 European ancestry individuals	NA	6q25.3		rs147555597-G	0.99045	3E-27		0.223319	[0.18-0.26] unit increase	NR [11722792] (imputed)	N
1812	chr6	160911595	160911596	rs147555597	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total triglycerides levels	115,082 European ancestry individuals	NA	6q25.3		rs147555597-G	0.99045	3E-23		0.205928	[0.17-0.25] unit increase	NR [11722792] (imputed)	N
1812	chr6	160911595	160911596	rs147555597	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large VLDL	115,082 European ancestry individuals	NA	6q25.3		rs147555597-G	0.99045	3E-26		0.218791	[0.18-0.26] unit increase	NR [11722792] (imputed)	N
1812	chr6	160911595	160911596	rs147555597	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium VLDL	115,082 European ancestry individuals	NA	6q25.3		rs147555597-G	0.99045	7E-11		0.139456	[0.098-0.181] unit increase	NR [11722792] (imputed)	N
1812	chr6	160911595	160911596	rs147555597	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large VLDL	115,082 European ancestry individuals	NA	6q25.3		rs147555597-G	0.99045	4E-21		0.195946	[0.16-0.24] unit increase	NR [11722792] (imputed)	N
1812	chr6	160911595	160911596	rs147555597	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6q25.3		rs147555597-G	0.99045	6E-42		0.280595	[0.24-0.32] unit increase	NR [11722792] (imputed)	N
1812	chr6	160911595	160911596	rs147555597	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in VLDL	115,082 European ancestry individuals	NA	6q25.3		rs147555597-G	0.99045	7E-19		0.186839	[0.15-0.23] unit increase	NR [11722792] (imputed)	N
1812	chr6	160911595	160911596	rs147555597	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total fatty acid levels	115,006 European ancestry individuals	NA	6q25.3		rs147555597-G	0.990444	1E-11		0.144379	[0.1-0.19] unit increase	NR [11722792] (imputed)	N
1812	chr6	160911595	160911596	rs147555597	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Saturated fatty acid levels	115,006 European ancestry individuals	NA	6q25.3		rs147555597-G	0.990444	8E-12		0.144904	[0.1-0.19] unit increase	NR [11722792] (imputed)	N
1812	chr6	160911595	160911596	rs147555597	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	6q25.3		rs147555597-G	0.990444	2E-23		0.198435	[0.16-0.24] unit increase	NR [11722792] (imputed)	N
1812	chr6	160911595	160911596	rs147555597	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	6q25.3		rs147555597-G	0.990444	2E-10		0.131665	[0.091-0.172] unit decrease	NR [11722792] (imputed)	N
1812	chr6	160911595	160911596	rs147555597	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to monounsaturated fatty acids	115,006 European ancestry individuals	NA	6q25.3		rs147555597-G	0.990444	1E-10		0.132893	[0.093-0.173] unit decrease	NR [11722792] (imputed)	N
1812	chr6	160911595	160911596	rs147555597	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	6q25.3		rs147555597-G	0.990444	3E-11		0.137532	[0.097-0.178] unit decrease	NR [11722792] (imputed)	N
1812	chr6	160911595	160911596	rs147555597	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of monounsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	6q25.3		rs147555597-G	0.990444	6E-10		0.127452	[0.087-0.168] unit increase	NR [11722792] (imputed)	N
1812	chr6	160911595	160911596	rs147555597	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large VLDL	115,082 European ancestry individuals	NA	6q25.3		rs147555597-G	0.99045	8E-25		0.213262	[0.17-0.25] unit increase	NR [11722792] (imputed)	N
1812	chr6	160911595	160911596	rs147555597	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large VLDL	115,082 European ancestry individuals	NA	6q25.3		rs147555597-G	0.99045	2E-18		0.181866	[0.14-0.22] unit increase	NR [11722792] (imputed)	N
1812	chr6	160911595	160911596	rs147555597	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6q25.3		rs147555597-G	0.99045	2E-35		0.256145	[0.22-0.3] unit increase	NR [11722792] (imputed)	N
1812	chr6	160911595	160911596	rs147555597	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in VLDL	115,082 European ancestry individuals	NA	6q25.3		rs147555597-G	0.99045	2E-14		0.161768	[0.12-0.2] unit increase	NR [11722792] (imputed)	N
1812	chr6	160911595	160911596	rs147555597	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Monounsaturated fatty acid levels	115,006 European ancestry individuals	NA	6q25.3		rs147555597-G	0.990444	1E-13		0.15693	[0.12-0.2] unit increase	NR [11722792] (imputed)	N
1812	chr6	160911595	160911596	rs147555597	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6q25.3		rs147555597-G	0.99045	3E-23		0.206195	[0.17-0.25] unit decrease	NR [11722792] (imputed)	N
1812	chr6	160911595	160911596	rs147555597	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6q25.3		rs147555597-G	0.99045	1E-11		0.139344	[0.099-0.179] unit decrease	NR [11722792] (imputed)	N
1812	chr6	160911595	160911596	rs147555597	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	6q25.3		rs147555597-G	0.99045	3E-18		0.178533	[0.14-0.22] unit decrease	NR [11722792] (imputed)	N
1812	chr6	160911595	160911596	rs147555597	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	6q25.3		rs147555597-G	0.99045	4E-8		0.11241	[0.072-0.152] unit decrease	NR [11722792] (imputed)	N
1812	chr6	160911595	160911596	rs147555597	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	6q25.3		rs147555597-G	0.99045	3E-24		0.211045	[0.17-0.25] unit increase	NR [11722792] (imputed)	N
1812	chr6	160911595	160911596	rs147555597	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	6q25.3		rs147555597-G	0.99045	4E-17		0.174726	[0.13-0.22] unit increase	NR [11722792] (imputed)	N
1812	chr6	160911595	160911596	rs147555597	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6q25.3		rs147555597-G	0.99045	2E-34		0.253305	[0.21-0.29] unit increase	NR [11722792] (imputed)	N
1812	chr6	160911595	160911596	rs147555597	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in VLDL	115,082 European ancestry individuals	NA	6q25.3		rs147555597-G	0.99045	1E-12		0.15125	[0.11-0.19] unit increase	NR [11722792] (imputed)	N
1812	chr6	160911595	160911596	rs147555597	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large VLDL particles	115,082 European ancestry individuals	NA	6q25.3		rs147555597-G	0.99045	1E-23		0.206515	[0.17-0.25] unit increase	NR [11722792] (imputed)	N
1812	chr6	160911595	160911596	rs147555597	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large VLDL particles	115,082 European ancestry individuals	NA	6q25.3		rs147555597-G	0.99045	1E-20		0.192996	[0.15-0.23] unit increase	NR [11722792] (imputed)	N
1812	chr6	160911595	160911596	rs147555597	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of chylomicrons and extremely large VLDL particles	115,082 European ancestry individuals	NA	6q25.3		rs147555597-G	0.99045	2E-37		0.264004	[0.22-0.3] unit increase	NR [11722792] (imputed)	N
1812	chr6	160911595	160911596	rs147555597	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of VLDL particles	115,082 European ancestry individuals	NA	6q25.3		rs147555597-G	0.99045	3E-8		0.118077	[0.076-0.16] unit increase	NR [11722792] (imputed)	N
1812	chr6	160911595	160911596	rs147555597	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	6q25.3		rs147555597-G	0.990507	7E-37		0.26147	[0.22-0.3] unit decrease	NR [11722792] (imputed)	N
1812	chr6	160911595	160911596	rs147555597	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6q25.3		rs147555597-G	0.99045	2E-12		0.149502	[0.11-0.19] unit decrease	NR [11722792] (imputed)	N
1812	chr6	160911595	160911596	rs147555597	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6q25.3		rs147555597-G	0.99045	4E-14		0.1626	[0.12-0.2] unit increase	NR [11722792] (imputed)	N
1812	chr6	160911595	160911596	rs147555597	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6q25.3		rs147555597-G	0.99045	5E-16		0.163565	[0.12-0.2] unit decrease	NR [11722792] (imputed)	N
1812	chr6	160911595	160911596	rs147555597	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	6q25.3		rs147555597-G	0.99045	2E-31		0.240007	[0.2-0.28] unit decrease	NR [11722792] (imputed)	N
1812	chr6	160911595	160911596	rs147555597	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	6q25.3		rs147555597-G	0.990565	6E-31		0.252496	[0.21-0.3] unit decrease	NR [11722792] (imputed)	N
1812	chr6	160911595	160911596	rs147555597	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large VLDL	115,082 European ancestry individuals	NA	6q25.3		rs147555597-G	0.99045	1E-13		0.157101	[0.12-0.2] unit increase	NR [11722792] (imputed)	N
1812	chr6	160911595	160911596	rs147555597	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large VLDL	115,082 European ancestry individuals	NA	6q25.3		rs147555597-G	0.99045	8E-11		0.137933	[0.096-0.18] unit increase	NR [11722792] (imputed)	N
1812	chr6	160911595	160911596	rs147555597	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6q25.3		rs147555597-G	0.99045	2E-30		0.237583	[0.2-0.28] unit increase	NR [11722792] (imputed)	N
1812	chr6	160911595	160911596	rs147555597	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	6q25.3		rs147555597-G	0.990507	2E-33		0.248312	[0.21-0.29] unit decrease	NR [11722792] (imputed)	N
1812	chr6	160911595	160911596	rs147555597	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6q25.3		rs147555597-G	0.99045	5E-11		0.137633	[0.097-0.179] unit decrease	NR [11722792] (imputed)	N
1812	chr6	160911595	160911596	rs147555597	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6q25.3		rs147555597-G	0.99045	3E-15		0.159744	[0.12-0.2] unit decrease	NR [11722792] (imputed)	N
1812	chr6	160911595	160911596	rs147555597	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	6q25.3		rs147555597-G	0.99045	3E-27		0.227398	[0.19-0.27] unit decrease	NR [11722792] (imputed)	N
1812	chr6	160911595	160911596	rs147555597	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	6q25.3		rs147555597-G	0.990565	6E-44		0.301692	[0.26-0.34] unit decrease	NR [11722792] (imputed)	N
1812	chr6	160911595	160911596	rs147555597	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	6q25.3		rs147555597-G	0.99045	2E-18		0.183607	[0.14-0.22] unit increase	NR [11722792] (imputed)	N
1812	chr6	160911595	160911596	rs147555597	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	6q25.3		rs147555597-G	0.99045	6E-14		0.157803	[0.12-0.2] unit increase	NR [11722792] (imputed)	N
1812	chr6	160911595	160911596	rs147555597	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6q25.3		rs147555597-G	0.99045	4E-32		0.244317	[0.2-0.28] unit increase	NR [11722792] (imputed)	N
1812	chr6	160911595	160911596	rs147555597	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for VLDL particles	115,082 European ancestry individuals	NA	6q25.3		rs147555597-G	0.99045	6E-33		0.239665	[0.2-0.28] unit increase	NR [11722792] (imputed)	N
1812	chr6	160911595	160911596	rs147555597	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Coronary atherosclerosis (PheCode 411.4)	16,041 European ancestry cases, 440,307 European ancestry controls	NA	6q25.3		rs147555597-A	0.008848	5E-21		0.62	[0.49-0.75] unit increase	NR [11842647] (imputed)	N
1812	chr6	160911595	160911596	rs147555597	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	6q25.3	LPAL2	rs147555597-A	0.0088	3E-31		0.3977	[0.33-0.46] unit increase	NR [8041861] (imputed)	N
1812	chr6	160911595	160911596	rs147555597	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	6q25.3	LPAL2	rs147555597-A	0.009	3E-31		0.398	[0.33-0.46] unit increase	Affymetrix [7947838] (imputed)	N
1812	chr6	160911595	160911596	rs147555597	28512139	Mack S	2017-05-16	J Lipid Res	A genome-wide association meta-analysis on lipoprotein (a) concentrations adjusted for apolipoprotein (a) isoforms.	Lipoprotein(a) levels adjusted for apolipoprotein(a) isoforms	13,781 European ancestry individuals	NA	6q25.3	LPA	rs147555597-A		2E-14		21.1	[16.74-25.46] unit increase	Affymetrix, Illumina [at least 7600000] (imputed)	N
1812	chr6	160921968	160921969	rs41267805	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	6q25.3	NR	rs41267805-A	NR	2E-20		0.0574	[0.045-0.07] unit decrease	Affymetrix [9000000] (imputed)	N
1812	chr6	160921968	160921969	rs41267805	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	6q25.3	NR	rs41267805-A	NR	4E-13		0.045	[0.033-0.057] unit decrease	Affymetrix [9000000] (imputed)	N
1812	chr6	160921968	160921969	rs41267805	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs41267805-A	NR	1E-134		0.1705	[0.16-0.18] unit decrease	Affymetrix [9000000] (imputed)	N
1812	chr6	160921968	160921969	rs41267805	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	6q25.3	NR	rs41267805-A	NR	2E-16		0.0533	[0.041-0.066] unit decrease	Affymetrix [9000000] (imputed)	N
1812	chr6	160921968	160921969	rs41267805	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	6q25.3	NR	rs41267805-A	NR	4E-10		0.0388	[0.027-0.051] unit decrease	Affymetrix [9000000] (imputed)	N
1812	chr6	160921968	160921969	rs41267805	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	6q25.3	NR	rs41267805-A	NR	6E-10		0.0402	[0.027-0.053] unit decrease	Affymetrix [9000000] (imputed)	N
1812	chr6	160922869	160922870	rs117733303	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	6q25.3	LPA	rs117733303-A	0.981577	3E-27		0.0838432	[0.069-0.099] unit decrease	Affymetrix [NR] (imputed)	N
1812	chr6	160922869	160922870	rs117733303	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	6q25.3	LPA	rs117733303-A	0.98158	4E-29		0.0864237	[0.071-0.102] unit decrease	Affymetrix [NR] (imputed)	N
1812	chr6	160932113	160932114	rs569981808	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6q25.3		rs569981808-C	0.989675	2E-8		0.130302	[0.085-0.176] unit decrease	NR [11722792] (imputed)	N
1812	chr6	160934524	160934525	rs151181359	28512139	Mack S	2017-05-16	J Lipid Res	A genome-wide association meta-analysis on lipoprotein (a) concentrations adjusted for apolipoprotein (a) isoforms.	Lipoprotein (a) levels	13,781 European ancestry individuals	NA	6q25.3	LPA	rs151181359-C		2E-57		39.56	[35.57-43.55] mg/dL increase	Affymetrix, Illumina [at least 7600000] (imputed)	N
1812	chr6	160936901	160936902	rs571962116	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium VLDL	115,082 European ancestry individuals	NA	6q25.3		rs571962116-C	0.997511	5E-9		0.240231	[0.16-0.32] unit increase	NR [11722792] (imputed)	N
1812	chr6	160936901	160936902	rs571962116	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large VLDL	115,082 European ancestry individuals	NA	6q25.3		rs571962116-C	0.997511	2E-10		0.262606	[0.18-0.34] unit increase	NR [11722792] (imputed)	N
1812	chr6	160936901	160936902	rs571962116	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in VLDL	115,082 European ancestry individuals	NA	6q25.3		rs571962116-C	0.997511	1E-9		0.251853	[0.17-0.33] unit increase	NR [11722792] (imputed)	N
1812	chr6	160936901	160936902	rs571962116	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large VLDL	115,082 European ancestry individuals	NA	6q25.3		rs571962116-C	0.997511	1E-9		0.248601	[0.17-0.33] unit increase	NR [11722792] (imputed)	N
1812	chr6	160936901	160936902	rs571962116	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	6q25.3		rs571962116-C	0.997511	6E-9		0.239023	[0.16-0.32] unit increase	NR [11722792] (imputed)	N
1812	chr6	160936901	160936902	rs571962116	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large VLDL particles	115,082 European ancestry individuals	NA	6q25.3		rs571962116-C	0.997511	2E-10		0.260871	[0.18-0.34] unit increase	NR [11722792] (imputed)	N
1812	chr6	160936901	160936902	rs571962116	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	6q25.3		rs571962116-C	0.997511	4E-9		0.244355	[0.16-0.33] unit increase	NR [11722792] (imputed)	N
1812	chr6	160937341	160937342	rs372450873	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (salicylic acid and derivatives)	41,461 East Asian ancestry cases, 137,265 East Asian ancestry controls	NA	6q25.3		rs372450873-A	0.004702488	4E-13		0.50229853	[0.37-0.64] unit increase	Illumina [13429980] (imputed)	N
1812	chr6	160942890	160942891	rs7453836	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	6q25.3	NR	rs7453836-?	NR	4E-9				Affymetrix [~ 8270000] (imputed)	N
1812	chr6	160942925	160942926	rs142126734	28512139	Mack S	2017-05-16	J Lipid Res	A genome-wide association meta-analysis on lipoprotein (a) concentrations adjusted for apolipoprotein (a) isoforms.	Lipoprotein(a) levels adjusted for apolipoprotein(a) isoforms	13,781 European ancestry individuals	NA	6q25.3	LPA	rs142126734-A		3E-57		7.77	[6.64-8.9] unit increase	Affymetrix, Illumina [at least 7600000] (imputed)	N
1812	chr6	160942925	160942926	rs142126734	28512139	Mack S	2017-05-16	J Lipid Res	A genome-wide association meta-analysis on lipoprotein (a) concentrations adjusted for apolipoprotein (a) isoforms.	Lipoprotein (a) levels	13,781 European ancestry individuals	NA	6q25.3	LPA	rs142126734-A		9E-48		6.58	[5.21-7.95] mg/dL increase	Affymetrix, Illumina [at least 7600000] (imputed)	N
1812	chr6	160946448	160946449	rs3124787	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6q25.3	LPA	rs3124787-G	NR	5E-8		0.0164212	[0.011-0.022] unit decrease	Affymetrix [319769] (imputed)	N
1812	chr6	160946448	160946449	rs3124787	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6q25.3	LPA	rs3124787-G	NR	3E-8		0.0167393	[0.011-0.023] unit decrease	Affymetrix [319769] (imputed)	N
1812	chr6	160948135	160948136	rs12664092	28512139	Mack S	2017-05-16	J Lipid Res	A genome-wide association meta-analysis on lipoprotein (a) concentrations adjusted for apolipoprotein (a) isoforms.	Lipoprotein(a) levels adjusted for apolipoprotein(a) isoforms	13,781 European ancestry individuals	NA	6q25.3	LPA	rs12664092-C		2E-23		7.17	[5.8-8.54] unit increase	Affymetrix, Illumina [at least 7600000] (imputed)	N
1812	chr6	160948135	160948136	rs12664092	28512139	Mack S	2017-05-16	J Lipid Res	A genome-wide association meta-analysis on lipoprotein (a) concentrations adjusted for apolipoprotein (a) isoforms.	Lipoprotein (a) levels	13,781 European ancestry individuals	NA	6q25.3	LPA	rs12664092-C		2E-7		5.4	[3.74-7.06] mg/dL increase	Affymetrix, Illumina [at least 7600000] (imputed)	N
1812	chr6	160952815	160952816	rs41267807	28512139	Mack S	2017-05-16	J Lipid Res	A genome-wide association meta-analysis on lipoprotein (a) concentrations adjusted for apolipoprotein (a) isoforms.	Lipoprotein(a) levels adjusted for apolipoprotein(a) isoforms	13,781 European ancestry individuals	NA	6q25.3	LPA	rs41267807-C		3E-8		5.32	[3.29-7.35] unit decrease	Affymetrix, Illumina [at least 7600000] (imputed)	N
1812	chr6	160953034	160953035	rs3127596	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6q25.3	LPA	rs3127596-G	NR	8E-9		0.017638	[0.012-0.024] unit increase	Affymetrix [319769] (imputed)	N
1812	chr6	160953034	160953035	rs3127596	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6q25.3	LPA	rs3127596-G	NR	1E-8		0.0175322	[0.012-0.024] unit increase	Affymetrix [319769] (imputed)	N
1812	chr6	160953034	160953035	rs3127596	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6q25.3	LPA	rs3127596-G	NR	3E-10		0.0193069	[0.013-0.025] unit decrease	Affymetrix [321016] (imputed)	N
1812	chr6	160953257	160953258	rs62441895	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs62441895-A	NR	2E-123		0.278	[0.25-0.3] unit decrease	Affymetrix [9000000] (imputed)	N
1812	chr6	160953641	160953642	rs41267809	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium VLDL	115,082 European ancestry individuals	NA	6q25.3		rs41267809-A	0.978585	2E-8		0.0780172	[0.051-0.105] unit decrease	NR [11722792] (imputed)	N
1812	chr6	160953641	160953642	rs41267809	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large VLDL	115,082 European ancestry individuals	NA	6q25.3		rs41267809-A	0.978585	2E-10		0.0869069	[0.06-0.114] unit decrease	NR [11722792] (imputed)	N
1812	chr6	160953641	160953642	rs41267809	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in VLDL	115,082 European ancestry individuals	NA	6q25.3		rs41267809-A	0.978585	7E-10		0.0858764	[0.059-0.113] unit decrease	NR [11722792] (imputed)	N
1812	chr6	160953641	160953642	rs41267809	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large VLDL	115,082 European ancestry individuals	NA	6q25.3		rs41267809-A	0.978585	2E-9		0.082371	[0.056-0.109] unit decrease	NR [11722792] (imputed)	N
1812	chr6	160953641	160953642	rs41267809	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Monounsaturated fatty acid levels	115,006 European ancestry individuals	NA	6q25.3		rs41267809-A	0.978579	3E-9		0.0832979	[0.056-0.111] unit decrease	NR [11722792] (imputed)	N
1812	chr6	160953641	160953642	rs41267809	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	6q25.3		rs41267809-A	0.978585	7E-9		0.0795712	[0.053-0.106] unit decrease	NR [11722792] (imputed)	N
1812	chr6	160953641	160953642	rs41267809	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large VLDL particles	115,082 European ancestry individuals	NA	6q25.3		rs41267809-A	0.978585	3E-10		0.0864759	[0.06-0.113] unit decrease	NR [11722792] (imputed)	N
1812	chr6	160953641	160953642	rs41267809	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	6q25.3		rs41267809-A	0.978585	2E-9		0.083089	[0.056-0.11] unit decrease	NR [11722792] (imputed)	N
1812	chr6	160953641	160953642	rs41267809	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs41267809-G	NR	2E-342		0.4032	[0.38-0.42] unit decrease	Affymetrix [9000000] (imputed)	N
1812	chr6	160953641	160953642	rs41267809	28512139	Mack S	2017-05-16	J Lipid Res	A genome-wide association meta-analysis on lipoprotein (a) concentrations adjusted for apolipoprotein (a) isoforms.	Lipoprotein(a) levels adjusted for apolipoprotein(a) isoforms	13,781 European ancestry individuals	NA	6q25.3	LPA	rs41267809-G		3E-11		6.76	[4.58-8.94] unit decrease	Affymetrix, Illumina [at least 7600000] (imputed)	N
1812	chr6	160955712	160955713	rs112842440	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	6q25.3		rs112842440-G	0.978665	4E-8		0.076221	[0.049-0.103] unit decrease	NR [11722792] (imputed)	N
1812	chr6	160955712	160955713	rs112842440	28512139	Mack S	2017-05-16	J Lipid Res	A genome-wide association meta-analysis on lipoprotein (a) concentrations adjusted for apolipoprotein (a) isoforms.	Lipoprotein(a) levels adjusted for apolipoprotein(a) isoforms	13,781 European ancestry individuals	NA	6q25.3	LPA	rs112842440-T		1E-23		6.85	[4.92-8.78] unit increase	Affymetrix, Illumina [at least 7600000] (imputed)	N
1813	chr6	160960358	160960359	rs6919346	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs6919346-C	NR	2E-2104		0.3606	[0.35-0.37] unit increase	Affymetrix [9000000] (imputed)	N
1813	chr6	160960358	160960359	rs6919346	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	6q25.3	NR	rs6919346-C	NR	4E-13		0.0235	[0.017-0.03] unit increase	Affymetrix [9000000] (imputed)	N
1813	chr6	160960358	160960359	rs6919346	19124843	Ober C	2009-01-07	J Lipid Res	Genome-wide association study of plasma lipoprotein(a) levels identifies multiple genes on chromosome 6q.	Lp (a) levels	357 Hutterite individuals	1,054 European ancestry males	6q25.3	LPA	rs6919346-?	0.16	4E-11		0.66	[NR] mg/dl decrease	Affymetrix [290327]	N
1813	chr6	160961136	160961137	rs3798220	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	6q25.3	NR	rs3798220-C	NR	1E-24		0.0921	[0.074-0.11] unit decrease	Affymetrix [9000000] (imputed)	N
1813	chr6	160961136	160961137	rs3798220	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	6q25.3	NR	rs3798220-C	NR	2E-52		0.1367	[0.12-0.15] unit increase	Affymetrix [9000000] (imputed)	N
1813	chr6	160961136	160961137	rs3798220	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	6q25.3	NR	rs3798220-C	NR	3E-68		0.1567	[0.14-0.17] unit increase	Affymetrix [9000000] (imputed)	N
1813	chr6	160961136	160961137	rs3798220	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs3798220-C	NR	2E-456		0.6843	[0.65-0.71] unit increase	Affymetrix [9000000] (imputed)	N
1813	chr6	160961136	160961137	rs3798220	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	6q25.3	NR	rs3798220-C	NR	3E-63		0.1509	[0.13-0.17] unit increase	Affymetrix [9000000] (imputed)	N
1813	chr6	160961136	160961137	rs3798220	21378990	Schunkert H	2011-03-06	Nat Genet	Large-scale association analysis identifies 13 new susceptibility loci for coronary artery disease.	Coronary heart disease	22,233 European ancestry cases, 64,762 European ancestry controls	56,682 European ancestry cases and controls	6q25.3	LPA	rs3798220-C	0.02	3E-11		1.51	[1.33-1.70]	Affymetrix, Illumina [~ 2300000] (imputed)	N
1813	chr6	160962369	160962370	rs116089584	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	6q25.3	NR	rs116089584-T	NR	1E-11		0.05	[0.035-0.065] unit decrease	Affymetrix [9000000] (imputed)	N
1813	chr6	160962369	160962370	rs116089584	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	6q25.3	NR	rs116089584-T	NR	1E-10		0.0476	[0.033-0.062] unit decrease	Affymetrix [9000000] (imputed)	N
1813	chr6	160962369	160962370	rs116089584	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	6q25.3	NR	rs116089584-T	NR	5E-9		0.0432	[0.029-0.058] unit decrease	Affymetrix [9000000] (imputed)	N
1813	chr6	160963229	160963230	rs11751605	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	6q25.3	NR	rs11751605-?		8E-13	(LPA)	0.411	[NR] unit increase	Illumina [NR]	N
1813	chr6	160964134	160964135	rs41265930	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	6q25.3	LPA	rs41265930-T	0.9445	4E-13		0.0488	[0.036-0.062] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1813	chr6	160964134	160964135	rs41265930	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6q25.3	LPA	rs41265930-C	0.06218656	3E-11	(EA, Angiostatin)	0.5637	[0.4-0.73] unit decrease	Affymetrix [509946]	N
1813	chr6	160966346	160966347	rs9365169	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6q25.3	LPA	rs9365169-G	NR	3E-9		0.0169427	[0.011-0.023] unit decrease	Affymetrix [321169] (imputed)	N
1813	chr6	160966346	160966347	rs9365169	28512139	Mack S	2017-05-16	J Lipid Res	A genome-wide association meta-analysis on lipoprotein (a) concentrations adjusted for apolipoprotein (a) isoforms.	Lipoprotein(a) levels adjusted for apolipoprotein(a) isoforms	13,781 European ancestry individuals	NA	6q25.3	LPA	rs9365169-G		4E-31		2.05	[1.6-2.5] unit decrease	Affymetrix, Illumina [at least 7600000] (imputed)	N
1813	chr6	160966558	160966559	rs139145675	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Lipoprotein (a) levels	348,806 European ancestry individuals	NA	6q25.3		rs139145675-?	NR	3E-18		0.299351	[0.23-0.37] unit decrease	NR [9800000] (imputed)	N
1813	chr6	160968967	160968968	rs41264848	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs41264848-A	NR	4E-15		0.3565	[0.27-0.45] unit increase	Affymetrix [9000000] (imputed)	N
1813	chr6	160969095	160969096	rs4708871	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs4708871-T	NR	8E-372		0.3392	[0.32-0.36] unit increase	Affymetrix [9000000] (imputed)	N
1813	chr6	160969692	160969693	rs143431368	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Lipoprotein (a) levels	348,806 European ancestry individuals	NA	6q25.3		rs143431368-?	NR	1E-58		0.315104	[0.28-0.35] unit decrease	NR [9800000] (imputed)	N
1813	chr6	160969692	160969693	rs143431368	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs143431368-C	NR	1E-41		0.4156	[0.36-0.48] unit decrease	Affymetrix [9000000] (imputed)	N
1813	chr6	160969737	160969738	rs10755578	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6q25.3	LPA	rs10755578-G	NR	8E-14		0.020992	[0.015-0.027] unit increase	Affymetrix [319769] (imputed)	N
1813	chr6	160969737	160969738	rs10755578	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6q25.3	LPA	rs10755578-G	NR	1E-13		0.0209155	[0.015-0.026] unit increase	Affymetrix [319769] (imputed)	N
1813	chr6	160969737	160969738	rs10755578	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6q25.3	LPA	rs10755578-G	NR	3E-13		0.0204972	[0.015-0.026] unit decrease	Affymetrix [321016] (imputed)	N
1813	chr6	160980329	160980330	rs6415084	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x short total sleep time interaction (2df test)	2,974 African American short sleepers, 365 Chinese ancestry short sleepers, 110 Asian ancestry short sleepers, at least 8,230 European ancestry short sleepers, 1,079 Hispanic/Latino short sleepers, 11,801 African American controls, 1,425 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,097 European ancestry controls, 4,023 Hispanic/Latino controls	at least 214 African American short sleepers, 629 East Asian ancestry short sleepers, up to 6,761 European ancestry short sleepers, 2,473 Hispanic short sleepers, at least 913 African American controls, 2,504 East Asian ancestry controls, up to 26,764 European ancestry controls, 9,854 Hispanic controls		SLC22A1	rs6415084-?	NR	1E-20		1.366	[1.01-1.72] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1813	chr6	160984636	160984637	rs146871152	32277301	Okuda H	2020-04-10	Clin Exp Nephrol	Genome-wide association study identifies new loci for albuminuria in the Japanese population.	Urinary albumin excretion	7,805 Japanese ancestry individuals	NA	6q25.3	LPA	rs146871152-T	0.034	7E-11		37.28	[26.08-48.48] unit increase	Illumina [4962728] (imputed)	N
1813	chr6	160985500	160985501	rs76000021	28512139	Mack S	2017-05-16	J Lipid Res	A genome-wide association meta-analysis on lipoprotein (a) concentrations adjusted for apolipoprotein (a) isoforms.	Lipoprotein (a) levels	13,781 European ancestry individuals	NA	6q25.3	LPA	rs76000021-C		5E-13		7.54	[5.06-10.02] mg/dL decrease	Affymetrix, Illumina [at least 7600000] (imputed)	N
1813	chr6	160985525	160985526	rs118039278	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	6q25.3		rs118039278-G	0.921159	1E-41		0.103028	[0.088-0.118] unit decrease	NR [11722792] (imputed)	N
1813	chr6	160985525	160985526	rs118039278	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	6q25.3		rs118039278-G	0.922288	3E-220		0.247126	[0.23-0.26] unit decrease	NR [11722792] (imputed)	N
1813	chr6	160985525	160985526	rs118039278	34601942	van Zuydam NR	2021-10-04	Circ Genom Precis Med	Genome-Wide Association Study of Peripheral Artery Disease.	Peripheral artery disease	12,086 European ancestry cases, 449,548 European ancestry controls	31,307 cases, 211,753 controls, 3,164 East Asian ancestry cases, 20,134 East Asian ancestry controls	6q25.3		rs118039278-A	0.07	7E-50		1.26	[1.21-1.31]	Affymetrix, Illumina [NR] (imputed)	N
1813	chr6	160985525	160985526	rs118039278	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	6q25.3		rs118039278-A	NR	2E-79		0.0819	[0.073-0.09] unit increase	Affymetrix, Illumina [20521447] (imputed)	N
1813	chr6	160985525	160985526	rs118039278	32981348	Klarin D	2020-09-28	Circulation	Genetic Architecture of Abdominal Aortic Aneurysm in the Million Veteran Program.	Abdominal aortic aneurysm	7,642 European ancestry cases, 172,172 European ancestry controls	2,835 European ancestry cases, 107,469 European ancestry controls	6q25.3	LPA	rs118039278-A	0.0663	4E-18		1.28	1.21-1.35	Affymetrix [18689289] (imputed)	N
1813	chr6	160985525	160985526	rs118039278	32964493	Palmer MR	2020-09-22	Genet Epidemiol	Loci identified by a genome-wide association study of carotid artery stenosis in the eMERGE network.	Carotid artery stenosis	1,705 European ancestry cases, 70 African American cases, 18 cases, 13,198 European ancestry controls, 4,760 African American, Asian, Native Hawaiian or Pacific Islander and unknown ancestry controls	934 British ancestry cases, 408,027 British ancestry controls	6q25.3	NR	rs118039278-A	0.081	3E-6		0.41	[0.24-0.58] unit increase	NR [NR] (imputed)	N
1813	chr6	160985525	160985526	rs118039278	32226016	Hu Y	2020-03-30	PLoS Genet	Minority-centric meta-analyses of blood lipid levels identify novel loci in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Low density lipoprotein cholesterol levels	17,222 African American individuals, 22,406 Hispanics ancestry individuals, 2,316 East Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals, 22,331 European ancestry individuals	up to 71,987 African American individuals, up to 34,899 Hispanics ancestry individuals, up to 315,133 European ancestry individuals, up to 9,593 Asian ancestry individuals, up to 94,674 European ancestry, East Asian ancestry, African American, South Asian ancestry, Hispanic individuals	6q25.3		rs118039278-?	NR	5E-17		0.208	[0.16-0.26] mg/dL increase	Affymetrix, Illumina [NR] (imputed)	N
1813	chr6	160985525	160985526	rs118039278	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	6q25.3	LPA	rs118039278-G	0.92133	2E-102		0.083508	[0.076-0.091] unit decrease	Affymetrix [NR] (imputed)	N
1813	chr6	160985525	160985526	rs118039278	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	6q25.3	LPA	rs118039278-G	0.921295	3E-111		0.086807	[0.079-0.094] unit decrease	Affymetrix [NR] (imputed)	N
1813	chr6	160985525	160985526	rs118039278	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	6q25.3	LPA	rs118039278-?	NR	6E-170		0.1307	[0.12-0.14] unit increase	Affymetrix [5701386] (imputed)	N
1813	chr6	160985525	160985526	rs118039278	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x short total sleep time interaction (2df test)	2,974 African American short sleepers, 365 Chinese ancestry short sleepers, 110 Asian ancestry short sleepers, at least 8,230 European ancestry short sleepers, 1,079 Hispanic/Latino short sleepers, 11,801 African American controls, 1,425 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,097 European ancestry controls, 4,023 Hispanic/Latino controls	at least 214 African American short sleepers, 629 East Asian ancestry short sleepers, up to 6,761 European ancestry short sleepers, 2,473 Hispanic short sleepers, at least 913 African American controls, 2,504 East Asian ancestry controls, up to 26,764 European ancestry controls, 9,854 Hispanic controls	6q25.3	SLC22A1	rs118039278-?	NR	7E-31		5.574	[4.62-6.52] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1813	chr6	160985525	160985526	rs118039278	31285632	Klarin D	2019-07-08	Nat Med	Genome-wide association study of peripheral artery disease in the Million Veteran Program.	Peripheral artery disease	24,009 European ancestry cases, 150,983 European ancestry controls, 5,373 African ancestry cases, 42,485 African ancestry controls, 1,925 Hispanic cases, 18,285 Hispanic controls	5,117 European ancestry cases, 389,291 European ancestry controls	6q25.3	LPA	rs118039278-A	0.0643	2E-43		1.26	[1.22-1.30]	Affymetrix [at least 20323458] (imputed)	N
1813	chr6	160985525	160985526	rs118039278	31285632	Klarin D	2019-07-08	Nat Med	Genome-wide association study of peripheral artery disease in the Million Veteran Program.	Minimum ankle-brachial index	13,382 European ancestry individuals, 3,284 African ancestry individuals, 998 Hispanic individuals	NA	6q25.3	LPA	rs118039278-A	0.0757	4E-6		0.104	[0.060-0.148] unit decrease	Affymetrix [at least 9211766] (imputed)	N
1813	chr6	160985525	160985526	rs118039278	28512139	Mack S	2017-05-16	J Lipid Res	A genome-wide association meta-analysis on lipoprotein (a) concentrations adjusted for apolipoprotein (a) isoforms.	Lipoprotein (a) levels	13,781 European ancestry individuals	NA	6q25.3	LPA	rs118039278-A		1E-396		32.43	[31.14-33.72] mg/dL increase	Affymetrix, Illumina [at least 7600000] (imputed)	N
1813	chr6	160986914	160986915	rs6938647	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol minus HDL-C levels	115,082 European ancestry individuals	NA	6q25.3		rs6938647-A	0.21767	1E-8		0.0286903	[0.019-0.039] unit increase	NR [11722792] (imputed)	N
1813	chr6	160986914	160986915	rs6938647	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol levels	115,082 European ancestry individuals	NA	6q25.3		rs6938647-A	0.21767	1E-8		0.0279905	[0.018-0.038] unit increase	NR [11722792] (imputed)	N
1813	chr6	160986914	160986915	rs6938647	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Remnant cholesterol (non-HDL, non-LDL -cholesterol)	115,082 European ancestry individuals	NA	6q25.3		rs6938647-A	0.21767	2E-9		0.0302519	[0.02-0.04] unit increase	NR [11722792] (imputed)	N
1813	chr6	160986914	160986915	rs6938647	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small LDL	115,082 European ancestry individuals	NA	6q25.3		rs6938647-A	0.21767	6E-11		0.0331085	[0.023-0.043] unit increase	NR [11722792] (imputed)	N
1813	chr6	160986914	160986915	rs6938647	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large LDL particles	115,082 European ancestry individuals	NA	6q25.3		rs6938647-A	0.21767	9E-9		0.0289852	[0.019-0.039] unit increase	NR [11722792] (imputed)	N
1813	chr6	160986914	160986915	rs6938647	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in LDL	115,082 European ancestry individuals	NA	6q25.3		rs6938647-A	0.21767	3E-9		0.029975	[0.02-0.04] unit increase	NR [11722792] (imputed)	N
1813	chr6	160986914	160986915	rs6938647	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	6q25.3		rs6938647-A	0.21767	1E-10		0.0323992	[0.022-0.042] unit increase	NR [11722792] (imputed)	N
1813	chr6	160986914	160986915	rs6938647	28512139	Mack S	2017-05-16	J Lipid Res	A genome-wide association meta-analysis on lipoprotein (a) concentrations adjusted for apolipoprotein (a) isoforms.	Lipoprotein(a) levels adjusted for apolipoprotein(a) isoforms	13,781 European ancestry individuals	NA	6q25.3	LPA	rs6938647-A		2E-87		5.48	[4.89-6.07] unit decrease	Affymetrix, Illumina [at least 7600000] (imputed)	N
1813	chr6	160986914	160986915	rs6938647	28512139	Mack S	2017-05-16	J Lipid Res	A genome-wide association meta-analysis on lipoprotein (a) concentrations adjusted for apolipoprotein (a) isoforms.	Lipoprotein (a) levels	13,781 European ancestry individuals	NA	6q25.3	LPA	rs6938647-A		7E-119		5.47	[4.76-6.18] mg/dL decrease	Affymetrix, Illumina [at least 7600000] (imputed)	N
1813	chr6	160987059	160987060	rs62441903	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large VLDL	115,082 European ancestry individuals	NA	6q25.3		rs62441903-A	0.98916	2E-8		0.109277	[0.071-0.147] unit decrease	NR [11722792] (imputed)	N
1813	chr6	160987059	160987060	rs62441903	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small LDL	115,082 European ancestry individuals	NA	6q25.3		rs62441903-A	0.98916	2E-8		0.111358	[0.073-0.15] unit decrease	NR [11722792] (imputed)	N
1813	chr6	160987059	160987060	rs62441903	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6q25.3		rs62441903-A	0.98916	2E-11		0.132225	[0.094-0.171] unit decrease	NR [11722792] (imputed)	N
1813	chr6	160987059	160987060	rs62441903	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in VLDL	115,082 European ancestry individuals	NA	6q25.3		rs62441903-A	0.98916	2E-8		0.109235	[0.071-0.148] unit decrease	NR [11722792] (imputed)	N
1813	chr6	160987059	160987060	rs62441903	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total triglycerides levels	115,082 European ancestry individuals	NA	6q25.3		rs62441903-A	0.98916	5E-8		0.107041	[0.069-0.146] unit decrease	NR [11722792] (imputed)	N
1813	chr6	160987059	160987060	rs62441903	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large VLDL	115,082 European ancestry individuals	NA	6q25.3		rs62441903-A	0.98916	4E-8		0.107435	[0.069-0.146] unit decrease	NR [11722792] (imputed)	N
1813	chr6	160987059	160987060	rs62441903	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6q25.3		rs62441903-A	0.98916	4E-11		0.129643	[0.091-0.168] unit decrease	NR [11722792] (imputed)	N
1813	chr6	160987059	160987060	rs62441903	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large VLDL	115,082 European ancestry individuals	NA	6q25.3		rs62441903-A	0.98916	2E-8		0.10952	[0.071-0.148] unit decrease	NR [11722792] (imputed)	N
1813	chr6	160987059	160987060	rs62441903	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6q25.3		rs62441903-A	0.98916	4E-11		0.129192	[0.091-0.167] unit decrease	NR [11722792] (imputed)	N
1813	chr6	160987059	160987060	rs62441903	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6q25.3		rs62441903-A	0.98916	3E-10		0.123704	[0.085-0.162] unit decrease	NR [11722792] (imputed)	N
1813	chr6	160987059	160987060	rs62441903	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of chylomicrons and extremely large VLDL particles	115,082 European ancestry individuals	NA	6q25.3		rs62441903-A	0.98916	8E-11		0.127089	[0.089-0.165] unit decrease	NR [11722792] (imputed)	N
1813	chr6	160987059	160987060	rs62441903	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	6q25.3		rs62441903-A	0.98912	5E-8		0.106169	[0.068-0.144] unit increase	NR [11722792] (imputed)	N
1813	chr6	160987059	160987060	rs62441903	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6q25.3		rs62441903-A	0.98916	3E-9		0.117086	[0.079-0.156] unit decrease	NR [11722792] (imputed)	N
1813	chr6	160987059	160987060	rs62441903	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6q25.3		rs62441903-A	0.98916	5E-10		0.121936	[0.084-0.16] unit decrease	NR [11722792] (imputed)	N
1813	chr6	160987059	160987060	rs62441903	28512139	Mack S	2017-05-16	J Lipid Res	A genome-wide association meta-analysis on lipoprotein (a) concentrations adjusted for apolipoprotein (a) isoforms.	Lipoprotein (a) levels	13,781 European ancestry individuals	NA	6q25.3	LPA	rs62441903-G		5E-33		14.36	[11.11-17.61] mg/dL decrease	Affymetrix, Illumina [at least 7600000] (imputed)	N
1813	chr6	160990456	160990457	rs9364562	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	6q25.3	NR	rs9364562-?	NR	1E-8				Illumina [7760689] (imputed)	N
1813	chr6	160991797	160991798	rs6903649	28512139	Mack S	2017-05-16	J Lipid Res	A genome-wide association meta-analysis on lipoprotein (a) concentrations adjusted for apolipoprotein (a) isoforms.	Lipoprotein (a) levels	13,781 European ancestry individuals	NA	6q25.3	LPA	rs6903649-C		4E-45		2.6	[1.95-3.25] mg/dL decrease	Affymetrix, Illumina [at least 7600000] (imputed)	N
1813	chr6	160992000	160992001	rs141550222	28512139	Mack S	2017-05-16	J Lipid Res	A genome-wide association meta-analysis on lipoprotein (a) concentrations adjusted for apolipoprotein (a) isoforms.	Lipoprotein (a) levels	13,781 European ancestry individuals	NA	6q25.3	LPA	rs141550222-G		7E-44		6.71	[5.18-8.24] mg/dL decrease	Affymetrix, Illumina [at least 7600000] (imputed)	N
1813	chr6	160997117	160997118	rs74617384	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (salicylic acid and derivatives)	61,583 European ancestry cases, 50,427 European ancestry controls, 41,461 East Asian ancestry cases, 137,265 East Asian ancestry controls	NA	6q25.3		rs74617384-T	NR	3E-13		0.105	[0.077-0.133] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1813	chr6	160997117	160997118	rs74617384	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls, 20,367 East Asian ancestry cases, 158,359 East Asian ancestry controls	NA	6q25.3		rs74617384-T	NR	4E-13		0.1102	[0.08-0.14] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1813	chr6	160997117	160997118	rs74617384	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antithrombotic agents)	67,653 European ancestry cases, 85,986 European ancestry controls, 54,220 East Asian ancestry cases, 124,506 East Asian ancestry controls	NA	6q25.3		rs74617384-T	NR	1E-20		0.1149	[0.091-0.139] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1813	chr6	160997117	160997118	rs74617384	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls, 33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	6q25.3		rs74617384-T	NR	3E-69		0.1814	[0.16-0.2] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1813	chr6	160997117	160997118	rs74617384	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	6q25.3	NR	rs74617384-T	NR	3E-22		0.0437	[0.035-0.053] unit decrease	Affymetrix [9000000] (imputed)	N
1813	chr6	160997117	160997118	rs74617384	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	6q25.3	NR	rs74617384-T	NR	7E-151		0.1177	[0.11-0.13] unit increase	Affymetrix [9000000] (imputed)	N
1813	chr6	160997117	160997118	rs74617384	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	6q25.3	NR	rs74617384-T	NR	1E-11		0.0321	[0.023-0.041] unit decrease	Affymetrix [9000000] (imputed)	N
1813	chr6	160997117	160997118	rs74617384	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	6q25.3	NR	rs74617384-T	NR	9E-193		0.1334	[0.12-0.14] unit increase	Affymetrix [9000000] (imputed)	N
1813	chr6	160997117	160997118	rs74617384	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs74617384-T	NR	1E-19215		1.4083	[1.4-1.42] unit increase	Affymetrix [9000000] (imputed)	N
1813	chr6	160997117	160997118	rs74617384	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	6q25.3	NR	rs74617384-T	NR	9E-10		0.0275	[0.019-0.036] unit decrease	Affymetrix [9000000] (imputed)	N
1813	chr6	160997117	160997118	rs74617384	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	6q25.3	NR	rs74617384-T	NR	3E-10		0.0283	[0.019-0.037] unit increase	Affymetrix [9000000] (imputed)	N
1813	chr6	160997117	160997118	rs74617384	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	6q25.3	NR	rs74617384-T	NR	2E-178		0.1284	[0.12-0.14] unit increase	Affymetrix [9000000] (imputed)	N
1813	chr6	160997117	160997118	rs74617384	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Total cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	6q25.3	LPA	rs74617384-?		4E-24		0.1337	[0.11-0.16] unit increase	Illumina [31500000] (imputed)	N
1813	chr6	160997117	160997118	rs74617384	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (salicylic acid and derivatives)	61,583 European ancestry cases, 50,427 European ancestry controls	NA	6q25.3	LPA	rs74617384-T	0.0826667	3E-13		0.105044425	[0.077-0.133] unit increase	Affymetrix [7288503] (imputed)	N
1813	chr6	160997117	160997118	rs74617384	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls	NA	6q25.3	LPA	rs74617384-T	0.0800491	4E-13		0.110204026	[0.08-0.14] unit increase	Affymetrix [7288503] (imputed)	N
1813	chr6	160997117	160997118	rs74617384	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (antithrombotic agents)	67,653 European ancestry cases, 85,986 European ancestry controls	NA	6q25.3	LPA	rs74617384-T	0.0815418	1E-20		0.114872	[0.091-0.139] unit increase	Affymetrix [7288503] (imputed)	N
1813	chr6	160997117	160997118	rs74617384	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls	NA	6q25.3	LPA	rs74617384-T	0.0801433	3E-69		0.18137231	[0.16-0.2] unit increase	Affymetrix [7288503] (imputed)	N
1813	chr6	160997117	160997118	rs74617384	30670697	Kilpelainen TO	2019-01-22	Nat Commun	Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity.	LDL cholesterol x physical activity interaction (2df test)	7,260 African American inactive individuals, 12,761 African American active individuals, 2,740 Asian ancestry inactive individuals, 3,615 Asian ancestry active individuals, 22,378 European ancestry inactive individuals, 55,310 European ancestry active individuals, 2,163 Hispanic or Latin American inactive individuals, 3,461 Hispanic or Latin American active individuals	571 African American inactive individuals, 1,521 African American active individuals, 1,217 South African Black ancestry inactive individuals, 389 South African Black ancestry active individuals, 2,495 East Asian ancestry inactive individuals, 1,947 East Asian ancestry active individuals,  724 South Asian ancestry inactive individuals, 1,425 South Asian ancestry active individuals,  33,796 European ancestry inactive individuals, 50,812 European ancestry active individuals, 2,578 Hispanic inactive individuals, 8,661 Hispanic active individuals	6q25.3	NR	rs74617384-A	0.942	4E-46				Affymetrix, Illumina [at least 2500000] (imputed)	N
1813	chr6	160997117	160997118	rs74617384	30003307	Fall T	2018-07-12	Diabetologia	Genome-wide association study of coronary artery disease among individuals with diabetes: the UK Biobank.	Coronary artery disease in diabetes	3,968 British ancestry cases, 11,698 British ancestry controls	NA	6q25.3	LPA	rs74617384-T	NR	3E-12		1.38	[1.26-1.51]	Affymetrix [9087334] (imputed)	N
1813	chr6	160997117	160997118	rs74617384	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	Cholesterol, total	19,259 British ancestry individuals from 6863 families.	NA	6q25.3	LPA	rs74617384-T	0.0838	3E-9		0.12114009	[0.081-0.161] mg/dl increase	Illumina [24111857] (imputed)	N
1813	chr6	160997117	160997118	rs74617384	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental longevity (combined parental age at death)	45,627 middle-aged British individuals	NA	6q25.3	NR	rs74617384-?	NR	1E-6		0.06755	[0.041-0.095] unit increase	Affymetrix [9658292] (imputed)	N
1813	chr6	160998198	160998199	rs41267813	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Lipoprotein (a) levels	348,806 European ancestry individuals	NA	6q25.3		rs41267813-?	NR	6E-44		0.259289	[0.22-0.3] unit decrease	NR [9800000] (imputed)	N
1813	chr6	161001427	161001428	rs932631509	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Stable angina pectoris	18,833 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	6q25.3		rs932631509-C	0.003959882	1E-15		0.8362829	[0.63-1.04] unit increase	Illumina [13427711] (imputed)	N
1813	chr6	161001427	161001428	rs932631509	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	6q25.3		rs932631509-C	0.003959882	3E-16		0.9795033	[0.74-1.21] unit increase	Illumina [13427135] (imputed)	N
1813	chr6	161001427	161001428	rs932631509	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Angina pectoris	14,007 East Asian ancestry cases, 145,158 East Asian ancestry controls	NA	6q25.3		rs932631509-C	0.003972764	6E-10		0.7326264	[0.5-0.96] unit increase	Illumina [13426705] (imputed)	N
1813	chr6	161001427	161001428	rs932631509	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 142,336 Japanese ancestry controls	NA	6q25.3	LPA	rs932631509-?	NR	4E-17		0.574941	[0.44-0.71] unit increase	Illumina [19707525] (imputed)	N
1813	chr6	161004350	161004351	rs145470851	28512139	Mack S	2017-05-16	J Lipid Res	A genome-wide association meta-analysis on lipoprotein (a) concentrations adjusted for apolipoprotein (a) isoforms.	Lipoprotein(a) levels adjusted for apolipoprotein(a) isoforms	13,781 European ancestry individuals	NA	6q25.3	LPA	rs145470851-A		9E-34		15.97	[13.13-18.81] unit decrease	Affymetrix, Illumina [at least 7600000] (imputed)	N
1813	chr6	161004971	161004972	rs77009508	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	6q25.3	NR	rs77009508-G	NR	1E-24		0.0474	[0.038-0.056] unit increase	Affymetrix [9000000] (imputed)	N
1813	chr6	161004971	161004972	rs77009508	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	6q25.3	NR	rs77009508-G	NR	3E-10		0.0292	[0.02-0.038] unit decrease	Affymetrix [9000000] (imputed)	N
1813	chr6	161004971	161004972	rs77009508	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs77009508-G	NR	2E-572		0.2526	[0.24-0.26] unit decrease	Affymetrix [9000000] (imputed)	N
1813	chr6	161004971	161004972	rs77009508	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	6q25.3	NR	rs77009508-G	NR	2E-28		0.0536	[0.044-0.063] unit decrease	Affymetrix [9000000] (imputed)	N
1813	chr6	161004971	161004972	rs77009508	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	6q25.3	NR	rs77009508-G	NR	1E-10		0.0312	[0.022-0.041] unit decrease	Affymetrix [9000000] (imputed)	N
1813	chr6	161004971	161004972	rs77009508	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	6q25.3	LPA	rs77009508-A	0.926268	4E-32		0.044882	[0.037-0.052] unit decrease	Affymetrix [NR] (imputed)	N
1813	chr6	161005387	161005388	rs571848809	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	6q25.3		rs571848809-G	0.893611	7E-36		0.0802846	[0.068-0.093] unit decrease	NR [11722792] (imputed)	N
1813	chr6	161005387	161005388	rs571848809	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	6q25.3		rs571848809-G	0.893611	2E-21		0.0619192	[0.049-0.075] unit decrease	NR [11722792] (imputed)	N
1813	chr6	161005387	161005388	rs571848809	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	6q25.3		rs571848809-G	0.893611	2E-37		0.0808886	[0.069-0.093] unit decrease	NR [11722792] (imputed)	N
1813	chr6	161005387	161005388	rs571848809	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large HDL	115,082 European ancestry individuals	NA	6q25.3		rs571848809-G	0.893611	1E-17		0.0516925	[0.04-0.064] unit increase	NR [11722792] (imputed)	N
1813	chr6	161005387	161005388	rs571848809	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	6q25.3		rs571848809-G	0.893611	7E-29		0.0710636	[0.059-0.084] unit decrease	NR [11722792] (imputed)	N
1813	chr6	161005387	161005388	rs571848809	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	6q25.3		rs571848809-G	0.893611	3E-18		0.0564314	[0.044-0.069] unit decrease	NR [11722792] (imputed)	N
1813	chr6	161005387	161005388	rs571848809	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large HDL	115,082 European ancestry individuals	NA	6q25.3		rs571848809-G	0.893611	9E-16		0.0486102	[0.037-0.06] unit increase	NR [11722792] (imputed)	N
1813	chr6	161005387	161005388	rs571848809	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	6q25.3		rs571848809-G	0.893611	5E-18		0.0542019	[0.042-0.066] unit increase	NR [11722792] (imputed)	N
1813	chr6	161005387	161005388	rs571848809	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large HDL particles	115,082 European ancestry individuals	NA	6q25.3		rs571848809-G	0.893611	4E-15		0.0476373	[0.036-0.059] unit increase	NR [11722792] (imputed)	N
1813	chr6	161005387	161005388	rs571848809	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	6q25.3		rs571848809-G	0.893611	2E-19		0.0529298	[0.041-0.064] unit increase	NR [11722792] (imputed)	N
1813	chr6	161005387	161005388	rs571848809	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	6q25.3		rs571848809-G	0.893609	2E-18		0.058595	[0.045-0.072] unit increase	NR [11722792] (imputed)	N
1813	chr6	161005387	161005388	rs571848809	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	6q25.3		rs571848809-G	0.893611	3E-34		0.0780387	[0.066-0.091] unit increase	NR [11722792] (imputed)	N
1813	chr6	161005387	161005388	rs571848809	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	6q25.3		rs571848809-G	0.893611	2E-24		0.0615009	[0.05-0.073] unit increase	NR [11722792] (imputed)	N
1813	chr6	161005387	161005388	rs571848809	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	6q25.3		rs571848809-G	0.893611	4E-25		0.061473	[0.05-0.073] unit increase	NR [11722792] (imputed)	N
1813	chr6	161005387	161005388	rs571848809	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	6q25.3		rs571848809-G	0.893611	1E-20		0.0561909	[0.044-0.068] unit increase	NR [11722792] (imputed)	N
1813	chr6	161005387	161005388	rs571848809	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	6q25.3		rs571848809-G	0.893611	1E-35		0.0796369	[0.067-0.092] unit increase	NR [11722792] (imputed)	N
1813	chr6	161005387	161005388	rs571848809	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	6q25.3		rs571848809-G	0.893611	4E-35		0.0780881	[0.066-0.09] unit increase	NR [11722792] (imputed)	N
1813	chr6	161005387	161005388	rs571848809	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	6q25.3		rs571848809-G	0.893611	2E-23		0.0606567	[0.049-0.073] unit increase	NR [11722792] (imputed)	N
1813	chr6	161005387	161005388	rs571848809	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	6q25.3		rs571848809-G	0.893611	6E-24		0.0597534	[0.048-0.071] unit increase	NR [11722792] (imputed)	N
1813	chr6	161005387	161005388	rs571848809	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	6q25.3		rs571848809-G	0.893611	9E-14		0.0443726	[0.033-0.056] unit increase	NR [11722792] (imputed)	N
1813	chr6	161005387	161005388	rs571848809	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	6q25.3		rs571848809-A	NR	3E-51		0.0557	[0.048-0.063] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
1813	chr6	161005387	161005388	rs571848809	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	6q25.3	LPA	rs571848809-G	0.894515	7E-75		0.0568765	[0.051-0.063] unit increase	Affymetrix [NR] (imputed)	N
1813	chr6	161005388	161005389	rs191555775	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6q25.3	NR	rs191555775-A	NR	5E-12		0.052	unit increase	Affymetrix [at least 7091467] (imputed)	N
1813	chr6	161005388	161005389	rs191555775	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6q25.3	NR	rs191555775-A	0.901	1E-11	(EA)	0.053	unit increase	Affymetrix [at least 7091467] (imputed)	N
1813	chr6	161005388	161005389	rs191555775	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6q25.3	NR	rs191555775-A	NR	7E-10		0.047	unit increase	Affymetrix [at least 7091467] (imputed)	N
1813	chr6	161005388	161005389	rs191555775	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6q25.3	NR	rs191555775-A	0.901	1E-9	(EA)	0.049	unit increase	Affymetrix [at least 7091467] (imputed)	N
1813	chr6	161005388	161005389	rs191555775	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6q25.3	NR	rs191555775-A	NR	3E-16		0.051	unit increase	Affymetrix [at least 7091467] (imputed)	N
1813	chr6	161005388	161005389	rs191555775	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6q25.3	NR	rs191555775-A	0.901	2E-16	(EA)	0.052	unit increase	Affymetrix [at least 7091467] (imputed)	N
1813	chr6	161005388	161005389	rs191555775	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	HDL cholesterol	up to 62,166 European ancestry individuals	NA	6q25.3	LPA	rs191555775-A	0.9	4E-8		0.057	[0.037-0.077] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
1813	chr6	161005609	161005610	rs55730499	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large HDL	115,082 European ancestry individuals	NA	6q25.3		rs55730499-C	0.920141	1E-18		0.0638074	[0.05-0.078] unit increase	NR [11722792] (imputed)	N
1813	chr6	161005609	161005610	rs55730499	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of saturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	6q25.3		rs55730499-C	0.920145	2E-22		0.0735112	[0.059-0.088] unit increase	NR [11722792] (imputed)	N
1813	chr6	161005609	161005610	rs55730499	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	6q25.3		rs55730499-C	0.92014	5E-13		0.0524132	[0.038-0.067] unit decrease	NR [11722792] (imputed)	N
1813	chr6	161005609	161005610	rs55730499	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	6q25.3		rs55730499-T	NR	1E-58		0.0686	[0.06-0.077] unit increase	Affymetrix, Illumina [20536134] (imputed)	N
1813	chr6	161005609	161005610	rs55730499	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Stable angina pectoris	17,894 European ancestry cases, 325,132 European ancestry controls, 18,833 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	6q25.3		rs55730499-T	NR	6E-52		0.3292	[0.29-0.37] unit increase	Affymetrix, Illumina [20456336] (imputed)	N
1813	chr6	161005609	161005610	rs55730499	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	20,917 European ancestry cases, 440,906 European ancestry controls, 14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	6q25.3		rs55730499-T	NR	1E-55		0.3594	[0.31-0.4] unit increase	Affymetrix, Illumina [25841367] (imputed)	N
1813	chr6	161005609	161005610	rs55730499	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (vasodilators used in cardiac diseases)	5,546 European ancestry cases, 237,113 European ancestry controls, 17,050 East Asian ancestry cases, 161,676 East Asian ancestry controls	NA	6q25.3		rs55730499-T	NR	1E-17		0.2985	[0.23-0.37] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1813	chr6	161005609	161005610	rs55730499	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	6q25.3		rs55730499-T	NR	7E-15		0.0866	[0.065-0.108] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1813	chr6	161005609	161005610	rs55730499	31919418	Shah S	2020-01-09	Nat Commun	Genome-wide association and Mendelian randomisation analysis provide insights into the pathogenesis of heart failure.	Heart failure	47,309 European ancestry cases, 930,014 European ancestry controls	NA	6q25.3	LPA	rs55730499-T	0.07	2E-11		1.11	[1.08-1.14]	Affymetrix, Illumina [8246881] (imputed)	N
1813	chr6	161005609	161005610	rs55730499	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (vasodilators used in cardiac diseases)	5,546 European ancestry cases, 237,113 European ancestry controls	NA	6q25.3	LPA	rs55730499-T	0.0811461	1E-17		0.29849184	[0.23-0.37] unit increase	Affymetrix [7288503] (imputed)	N
1813	chr6	161005609	161005610	rs55730499	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	6q25.3	LPA	rs55730499-T	0.0795143	7E-15		0.086630024	[0.065-0.108] unit increase	Affymetrix [7288503] (imputed)	N
1813	chr6	161005609	161005610	rs55730499	30104761	Zhou W	2018-08-13	Nat Genet	Efficiently controlling for case-control imbalance and sample relatedness in large-scale genetic association studies.	Coronary artery disease	31,355 European ancestry cases, 377,103 European ancestry controls	NA	6q25.3	LPA	rs55730499-T	0.081	5E-62				Affymetrix [28000000] (imputed)	N
1813	chr6	161005609	161005610	rs55730499	29227965	Pilling LC	2017-12-01	Aging (Albany NY)	Human longevity: 25 genetic loci associated in 389,166 UK biobank participants.	Parental longevity (mother's attained age)	412,937 British ancestry individuals	NA	6q25.3	LPA	rs55730499-C	NR	6E-10				Affymetrix [11535925] (imputed)	N
1813	chr6	161005609	161005610	rs55730499	29227965	Pilling LC	2017-12-01	Aging (Albany NY)	Human longevity: 25 genetic loci associated in 389,166 UK biobank participants.	Parental longevity (father's attained age)	415,311 British ancestry individuals	NA	6q25.3	LPA	rs55730499-C	NR	6E-17				Affymetrix [11535925] (imputed)	N
1813	chr6	161005609	161005610	rs55730499	29227965	Pilling LC	2017-12-01	Aging (Albany NY)	Human longevity: 25 genetic loci associated in 389,166 UK biobank participants.	Parental longevity (combined parental attained age, Martingale residuals)	389,166 British ancestry individuals	NA	6q25.3	LPA	rs55730499-C	0.92	2E-18		0.0361	[0.028-0.044] unit decrease	Affymetrix [11535925] (imputed)	N
1813	chr6	161005609	161005610	rs55730499	29227965	Pilling LC	2017-12-01	Aging (Albany NY)	Human longevity: 25 genetic loci associated in 389,166 UK biobank participants.	Parental longevity (combined parental age at death)	208,118 British ancestry individuals	NA	6q25.3	LPA	rs55730499-C	NR	5E-11				Affymetrix [11535925] (imputed)	N
1813	chr6	161005609	161005610	rs55730499	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	6q25.3	LPA	rs55730499-T	0.0693	1E-153		0.3122	[0.29-0.34] unit increase	Affymetrix [at least 7947838] (imputed)	N
1813	chr6	161005609	161005610	rs55730499	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	6q25.3	LPA	rs55730499-T	0.0686	3E-154		0.3368	[0.31-0.36] unit increase	NR [8041861] (imputed)	N
1813	chr6	161005609	161005610	rs55730499	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	6q25.3	LPA	rs55730499-T	0.069	3E-154		0.337	[0.31-0.36] unit increase	Affymetrix [7947838] (imputed)	N
1813	chr6	161005609	161005610	rs55730499	29030599	Joshi PK	2017-10-13	Nat Commun	Genome-wide meta-analysis associates HLA-DQA1/DRB1 and LPA and lifestyle factors with human longevity.	Parental lifespan	up to 586,626 European ancestry individuals, up to 19,433 African ancestry individuals	NA	6q25.3	LPA	rs55730499-T	0.083	9E-11	(EA)	0.7	years decrease	Affymetrix, Illumina [at least 13643373] (imputed)	N
1813	chr6	161005609	161005610	rs55730499	28512139	Mack S	2017-05-16	J Lipid Res	A genome-wide association meta-analysis on lipoprotein (a) concentrations adjusted for apolipoprotein (a) isoforms.	Lipoprotein(a) levels adjusted for apolipoprotein(a) isoforms	13,781 European ancestry individuals	NA	6q25.3	LPA	rs55730499-T		4E-163		16.77	[15.63-17.91] unit increase	Affymetrix, Illumina [at least 7600000] (imputed)	N
1813	chr6	161005609	161005610	rs55730499	26343387	Nikpay M	2015-09-07	Nat Genet	A comprehensive 1,000 Genomes-based genome-wide association meta-analysis of coronary artery disease.	Coronary artery disease	42,096 European ancestry cases, 361 African American cases, 758 Hispanic American cases, 12,658 South Asian ancestry cases, 1,802 Lebanese ancestry cases, 3,614 East Asian ancestry cases, 99,121 European ancestry controls, 2,778 African American controls, 3,337 Hispanic American controls, 12,899 South Asian ancestry controls, 466 Lebanese ancestry controls, 7,709 East Asian ancestry controls	NA	6q25.3	SLC22A3, LPAL2, LPA	rs55730499-T	0.056243	5E-39		1.37	[1.31- 1.44]	Affymetrix, Illumina [8600000] (imputed)	N
1813	chr6	161005609	161005610	rs55730499	23696881	Wood AR	2013-05-16	PLoS One	Imputation of variants from the 1000 Genomes Project modestly improves known associations and can identify low-frequency variant-phenotype associations undetected by HapMap based imputation.	Lipid or lipoprotein levels	up to 1,206 European ancestry individuals	NA	6q25.3	LPA	rs55730499-?	NR	3E-25	(Lipoprotein A)			Illumina [up to 10879115] (imputed)	N
1813	chr6	161006076	161006077	rs41272114	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs41272114-T	NR	4E-445		0.3692	[0.35-0.39] unit decrease	Affymetrix [9000000] (imputed)	N
1813	chr6	161006076	161006077	rs41272114	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	6q25.3	LPA	rs41272114-T	0.0361	3E-11		0.1153	[0.081-0.149] unit decrease	NR [8041861] (imputed)	N
1813	chr6	161006076	161006077	rs41272114	28512139	Mack S	2017-05-16	J Lipid Res	A genome-wide association meta-analysis on lipoprotein (a) concentrations adjusted for apolipoprotein (a) isoforms.	Lipoprotein(a) levels adjusted for apolipoprotein(a) isoforms	13,781 European ancestry individuals	NA	6q25.3	LPA	rs41272114-T		3E-24		5.73	[4.31-7.15] unit decrease	Affymetrix, Illumina [at least 7600000] (imputed)	N
1813	chr6	161006076	161006077	rs41272114	28512139	Mack S	2017-05-16	J Lipid Res	A genome-wide association meta-analysis on lipoprotein (a) concentrations adjusted for apolipoprotein (a) isoforms.	Lipoprotein (a) levels	13,781 European ancestry individuals	NA	6q25.3	LPA	rs41272114-T		5E-86		8.63	[7.02-10.24] mg/dL decrease	Affymetrix, Illumina [at least 7600000] (imputed)	N
1813	chr6	161006076	161006077	rs41272114	25208887	Ma Q	2014-09-10	Blood	Genetic variants in PLG, LPA, and SIGLEC 14 as well as smoking contribute to plasma plasminogen levels.	Plasma plasminogen levels	up to 3,244 European ancestry individuals	NA	6q25.3	LPA	rs41272114-A	0.05	3E-8	(Conditioned on rs4252129 and rs1084651)	0.056	[NR] unit increase	Illumina [up to 4514079] (imputed)	N
1813	chr6	161006083	161006084	rs76144756	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs76144756-A	NR	1E-144		0.417	[0.39-0.45] unit decrease	Affymetrix [9000000] (imputed)	N
1813	chr6	161006104	161006105	rs41272112	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs41272112-T	NR	8E-60		0.3669	[0.32-0.41] unit increase	Affymetrix [9000000] (imputed)	N
1813	chr6	161006171	161006172	rs41272110	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	6q25.3	NR	rs41272110-G	NR	5E-13		0.0246	[0.018-0.031] unit decrease	Affymetrix [9000000] (imputed)	N
1813	chr6	161006171	161006172	rs41272110	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	6q25.3	NR	rs41272110-G	NR	1E-10		0.0229	[0.016-0.03] unit decrease	Affymetrix [9000000] (imputed)	N
1813	chr6	161006171	161006172	rs41272110	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	6q25.3	NR	rs41272110-G	NR	7E-12		0.0243	[0.017-0.031] unit increase	Affymetrix [9000000] (imputed)	N
1813	chr6	161008645	161008646	rs41272086	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	High density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	6q25.3	LPA	rs41272086-?		1E-8		0.0554	[0.036-0.075] unit increase	Illumina [31500000] (imputed)	N
1813	chr6	161008645	161008646	rs41272086	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	6q25.3	LPA	rs41272086-G	0.894422	2E-31		0.0372996	[0.031-0.044] unit increase	Affymetrix [NR] (imputed)	N
1813	chr6	161008645	161008646	rs41272086	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Monokine induced by gamma interferon levels	3,685 Finnish ancestry individuals	NA	6q25.3	NR	rs41272086-G	NR	7E-8		0.2226	[0.14-0.3] SD units increase	NR [10700000] (imputed)	N
1813	chr6	161010117	161010118	rs10455872	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6q25.3		rs10455872-A	0.921013	2E-47		0.104574	[0.09-0.119] unit increase	NR [11722792] (imputed)	N
1813	chr6	161010117	161010118	rs10455872	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	6q25.3		rs10455872-A	0.921216	8E-164		0.202108	[0.19-0.22] unit increase	NR [11722792] (imputed)	N
1813	chr6	161010117	161010118	rs10455872	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	6q25.3		rs10455872-A	0.921012	2E-42		0.0979869	[0.084-0.112] unit increase	NR [11722792] (imputed)	N
1813	chr6	161010117	161010118	rs10455872	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6q25.3		rs10455872-A	0.921013	3E-75		0.135512	[0.12-0.15] unit increase	NR [11722792] (imputed)	N
1813	chr6	161010117	161010118	rs10455872	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6q25.3		rs10455872-A	0.921013	2E-127		0.176806	[0.16-0.19] unit increase	NR [11722792] (imputed)	N
1813	chr6	161010117	161010118	rs10455872	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	6q25.3		rs10455872-A	0.921013	7E-46		0.103095	[0.089-0.117] unit increase	NR [11722792] (imputed)	N
1813	chr6	161010117	161010118	rs10455872	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6q25.3		rs10455872-A	0.921013	7E-84		0.140047	[0.13-0.15] unit increase	NR [11722792] (imputed)	N
1813	chr6	161010117	161010118	rs10455872	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	6q25.3		rs10455872-A	0.921013	7E-39		0.0976969	[0.083-0.112] unit increase	NR [11722792] (imputed)	N
1813	chr6	161010117	161010118	rs10455872	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	6q25.3		rs10455872-A	0.921023	9E-69		0.133506	[0.12-0.15] unit increase	NR [11722792] (imputed)	N
1813	chr6	161010117	161010118	rs10455872	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	6q25.3		rs10455872-A	0.922155	9E-256		0.265252	[0.25-0.28] unit increase	NR [11722792] (imputed)	N
1813	chr6	161010117	161010118	rs10455872	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	6q25.3		rs10455872-A	0.921013	1E-24		0.0752584	[0.061-0.09] unit increase	NR [11722792] (imputed)	N
1813	chr6	161010117	161010118	rs10455872	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large VLDL	115,082 European ancestry individuals	NA	6q25.3		rs10455872-A	0.921013	5E-172		0.203992	[0.19-0.22] unit increase	NR [11722792] (imputed)	N
1813	chr6	161010117	161010118	rs10455872	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large HDL	115,082 European ancestry individuals	NA	6q25.3		rs10455872-A	0.921013	3E-71		0.133011	[0.12-0.15] unit increase	NR [11722792] (imputed)	N
1813	chr6	161010117	161010118	rs10455872	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small LDL	115,082 European ancestry individuals	NA	6q25.3		rs10455872-A	0.921013	2E-126		0.177161	[0.16-0.19] unit increase	NR [11722792] (imputed)	N
1813	chr6	161010117	161010118	rs10455872	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium HDL	115,082 European ancestry individuals	NA	6q25.3		rs10455872-A	0.921013	1E-35		0.0935629	[0.079-0.108] unit increase	NR [11722792] (imputed)	N
1813	chr6	161010117	161010118	rs10455872	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large VLDL	115,082 European ancestry individuals	NA	6q25.3		rs10455872-A	0.921013	3E-141		0.185835	[0.17-0.2] unit increase	NR [11722792] (imputed)	N
1813	chr6	161010117	161010118	rs10455872	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6q25.3		rs10455872-A	0.921013	5E-320		0.281537	[0.27-0.3] unit increase	NR [11722792] (imputed)	N
1813	chr6	161010117	161010118	rs10455872	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in VLDL	115,082 European ancestry individuals	NA	6q25.3		rs10455872-A	0.921013	1E-154		0.194336	[0.18-0.21] unit increase	NR [11722792] (imputed)	N
1813	chr6	161010117	161010118	rs10455872	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in HDL	115,082 European ancestry individuals	NA	6q25.3		rs10455872-A	0.921013	3E-41		0.100693	[0.086-0.115] unit increase	NR [11722792] (imputed)	N
1813	chr6	161010117	161010118	rs10455872	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total triglycerides levels	115,082 European ancestry individuals	NA	6q25.3		rs10455872-A	0.921013	5E-129		0.178066	[0.16-0.19] unit increase	NR [11722792] (imputed)	N
1813	chr6	161010117	161010118	rs10455872	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large VLDL	115,082 European ancestry individuals	NA	6q25.3		rs10455872-A	0.921013	4E-147		0.189654	[0.18-0.2] unit increase	NR [11722792] (imputed)	N
1813	chr6	161010117	161010118	rs10455872	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6q25.3		rs10455872-A	0.921013	5E-277		0.261294	[0.25-0.28] unit increase	NR [11722792] (imputed)	N
1813	chr6	161010117	161010118	rs10455872	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	6q25.3		rs10455872-A	0.921013	7E-130		0.171823	[0.16-0.19] unit increase	NR [11722792] (imputed)	N
1813	chr6	161010117	161010118	rs10455872	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	6q25.3		rs10455872-A	0.921013	6E-72		0.131843	[0.12-0.15] unit decrease	NR [11722792] (imputed)	N
1813	chr6	161010117	161010118	rs10455872	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to monounsaturated fatty acids	115,006 European ancestry individuals	NA	6q25.3		rs10455872-A	0.921013	8E-75		0.134049	[0.12-0.15] unit decrease	NR [11722792] (imputed)	N
1813	chr6	161010117	161010118	rs10455872	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	6q25.3		rs10455872-A	0.921013	3E-79		0.138305	[0.12-0.15] unit decrease	NR [11722792] (imputed)	N
1813	chr6	161010117	161010118	rs10455872	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of monounsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	6q25.3		rs10455872-A	0.921013	8E-70		0.129439	[0.12-0.14] unit increase	NR [11722792] (imputed)	N
1813	chr6	161010117	161010118	rs10455872	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of docosahexaenoic acid to total fatty acid levels	115,006 European ancestry individuals	NA	6q25.3		rs10455872-A	0.921013	1E-28		0.0822512	[0.068-0.097] unit decrease	NR [11722792] (imputed)	N
1813	chr6	161010117	161010118	rs10455872	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6q25.3		rs10455872-A	0.921013	1E-55		0.114603	[0.1-0.13] unit decrease	NR [11722792] (imputed)	N
1813	chr6	161010117	161010118	rs10455872	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6q25.3		rs10455872-A	0.921013	7E-87		0.15102	[0.14-0.17] unit decrease	NR [11722792] (imputed)	N
1813	chr6	161010117	161010118	rs10455872	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	6q25.3		rs10455872-A	0.921013	3E-15		0.0584181	[0.044-0.073] unit increase	NR [11722792] (imputed)	N
1813	chr6	161010117	161010118	rs10455872	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6q25.3		rs10455872-A	0.921013	5E-46		0.104626	[0.09-0.119] unit decrease	NR [11722792] (imputed)	N
1813	chr6	161010117	161010118	rs10455872	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large VLDL	115,082 European ancestry individuals	NA	6q25.3		rs10455872-A	0.921013	7E-139		0.18472	[0.17-0.2] unit increase	NR [11722792] (imputed)	N
1813	chr6	161010117	161010118	rs10455872	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6q25.3		rs10455872-A	0.921013	1E-233		0.23877	[0.22-0.25] unit increase	NR [11722792] (imputed)	N
1813	chr6	161010117	161010118	rs10455872	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycoprotein acetyls levels	115,082 European ancestry individuals	NA	6q25.3		rs10455872-A	0.921013	1E-24		0.0776147	[0.063-0.092] unit increase	NR [11722792] (imputed)	N
1813	chr6	161010117	161010118	rs10455872	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6q25.3		rs10455872-A	0.921013	2E-31		0.0886495	[0.074-0.104] unit decrease	NR [11722792] (imputed)	N
1813	chr6	161010117	161010118	rs10455872	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	6q25.3		rs10455872-A	0.921216	2E-95		0.15373	[0.14-0.17] unit decrease	NR [11722792] (imputed)	N
1813	chr6	161010117	161010118	rs10455872	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6q25.3		rs10455872-A	0.921013	3E-58		0.116991	[0.1-0.13] unit decrease	NR [11722792] (imputed)	N
1813	chr6	161010117	161010118	rs10455872	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6q25.3		rs10455872-A	0.921013	1E-144		0.188662	[0.17-0.2] unit decrease	NR [11722792] (imputed)	N
1813	chr6	161010117	161010118	rs10455872	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	6q25.3		rs10455872-A	0.921013	9E-19		0.0641434	[0.05-0.078] unit decrease	NR [11722792] (imputed)	N
1813	chr6	161010117	161010118	rs10455872	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6q25.3		rs10455872-A	0.921013	1E-80		0.138417	[0.12-0.15] unit decrease	NR [11722792] (imputed)	N
1813	chr6	161010117	161010118	rs10455872	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	6q25.3		rs10455872-A	0.921013	1E-118		0.168768	[0.15-0.18] unit decrease	NR [11722792] (imputed)	N
1813	chr6	161010117	161010118	rs10455872	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	6q25.3		rs10455872-A	0.921013	4E-52		0.110249	[0.096-0.124] unit decrease	NR [11722792] (imputed)	N
1813	chr6	161010117	161010118	rs10455872	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	6q25.3		rs10455872-A	0.922155	9E-265		0.266534	[0.25-0.28] unit decrease	NR [11722792] (imputed)	N
1813	chr6	161010117	161010118	rs10455872	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	6q25.3		rs10455872-A	0.921013	2E-18		0.0665856	[0.052-0.081] unit decrease	NR [11722792] (imputed)	N
1813	chr6	161010117	161010118	rs10455872	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	6q25.3		rs10455872-A	0.921013	3E-130		0.17945	[0.16-0.19] unit increase	NR [11722792] (imputed)	N
1813	chr6	161010117	161010118	rs10455872	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6q25.3		rs10455872-A	0.921013	8E-231		0.238256	[0.22-0.25] unit increase	NR [11722792] (imputed)	N
1813	chr6	161010117	161010118	rs10455872	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Degree of unsaturation	115,006 European ancestry individuals	NA	6q25.3		rs10455872-A	0.921013	8E-43		0.0996016	[0.085-0.114] unit decrease	NR [11722792] (imputed)	N
1813	chr6	161010117	161010118	rs10455872	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large VLDL particles	115,082 European ancestry individuals	NA	6q25.3		rs10455872-A	0.921013	2E-132		0.179616	[0.17-0.19] unit increase	NR [11722792] (imputed)	N
1813	chr6	161010117	161010118	rs10455872	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of chylomicrons and extremely large VLDL particles	115,082 European ancestry individuals	NA	6q25.3		rs10455872-A	0.921013	1E-239		0.242419	[0.23-0.26] unit increase	NR [11722792] (imputed)	N
1813	chr6	161010117	161010118	rs10455872	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6q25.3		rs10455872-A	0.921013	3E-41		0.0965085	[0.082-0.111] unit decrease	NR [11722792] (imputed)	N
1813	chr6	161010117	161010118	rs10455872	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	6q25.3		rs10455872-A	0.921216	6E-225		0.234177	[0.22-0.25] unit decrease	NR [11722792] (imputed)	N
1813	chr6	161010117	161010118	rs10455872	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6q25.3		rs10455872-A	0.921013	4E-83		0.145663	[0.13-0.16] unit decrease	NR [11722792] (imputed)	N
1813	chr6	161010117	161010118	rs10455872	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6q25.3		rs10455872-A	0.921013	6E-87		0.151079	[0.14-0.17] unit increase	NR [11722792] (imputed)	N
1813	chr6	161010117	161010118	rs10455872	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	6q25.3		rs10455872-A	0.921013	2E-40		0.0994618	[0.085-0.114] unit decrease	NR [11722792] (imputed)	N
1813	chr6	161010117	161010118	rs10455872	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6q25.3		rs10455872-A	0.921013	3E-93		0.146658	[0.13-0.16] unit decrease	NR [11722792] (imputed)	N
1813	chr6	161010117	161010118	rs10455872	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	6q25.3		rs10455872-A	0.921013	1E-33		0.0892728	[0.075-0.104] unit decrease	NR [11722792] (imputed)	N
1813	chr6	161010117	161010118	rs10455872	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	6q25.3		rs10455872-A	0.921023	2E-213		0.228243	[0.21-0.24] unit decrease	NR [11722792] (imputed)	N
1813	chr6	161010117	161010118	rs10455872	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6q25.3		rs10455872-A	0.921013	4E-184		0.21335	[0.2-0.23] unit increase	NR [11722792] (imputed)	N
1813	chr6	161010117	161010118	rs10455872	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6q25.3		rs10455872-A	0.921013	5E-43		0.0993442	[0.085-0.113] unit decrease	NR [11722792] (imputed)	N
1813	chr6	161010117	161010118	rs10455872	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	6q25.3		rs10455872-A	0.921216	8E-207		0.224507	[0.21-0.24] unit decrease	NR [11722792] (imputed)	N
1813	chr6	161010117	161010118	rs10455872	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6q25.3		rs10455872-A	0.921013	5E-81		0.141595	[0.13-0.16] unit decrease	NR [11722792] (imputed)	N
1813	chr6	161010117	161010118	rs10455872	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	6q25.3		rs10455872-A	0.921013	1E-51		0.113787	[0.099-0.129] unit decrease	NR [11722792] (imputed)	N
1813	chr6	161010117	161010118	rs10455872	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6q25.3		rs10455872-A	0.921013	4E-92		0.146384	[0.13-0.16] unit decrease	NR [11722792] (imputed)	N
1813	chr6	161010117	161010118	rs10455872	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	6q25.3		rs10455872-A	0.921023	2E-180		0.214172	[0.2-0.23] unit decrease	NR [11722792] (imputed)	N
1813	chr6	161010117	161010118	rs10455872	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	6q25.3		rs10455872-A	0.922155	3E-283		0.277545	[0.26-0.29] unit decrease	NR [11722792] (imputed)	N
1813	chr6	161010117	161010118	rs10455872	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	6q25.3		rs10455872-A	0.921013	1E-22		0.0729487	[0.058-0.088] unit decrease	NR [11722792] (imputed)	N
1813	chr6	161010117	161010118	rs10455872	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6q25.3		rs10455872-A	0.921013	7E-207		0.225713	[0.21-0.24] unit increase	NR [11722792] (imputed)	N
1813	chr6	161010117	161010118	rs10455872	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for VLDL particles	115,082 European ancestry individuals	NA	6q25.3		rs10455872-A	0.921013	2E-205		0.217921	[0.2-0.23] unit increase	NR [11722792] (imputed)	N
1813	chr6	161010117	161010118	rs10455872	34601942	van Zuydam NR	2021-10-04	Circ Genom Precis Med	Genome-Wide Association Study of Peripheral Artery Disease.	Peripheral artery disease in non diabetes	6,732 Finnish ancestry cases, 416,855 Finnish ancestry controls, 6,732 non-Scandinavian ancestry cases, 416,855 non-Scandinavian ancestry controls, 6,732 British ancestry cases, 416,855 British ancestry controls	NA	6q25.3		rs10455872-G	0.08	1E-7		1.23	[1.12-1.34]	Illumina [NR] (imputed)	N
1813	chr6	161010117	161010118	rs10455872	34601942	van Zuydam NR	2021-10-04	Circ Genom Precis Med	Genome-Wide Association Study of Peripheral Artery Disease.	Peripheral artery disease in ever smokers	7,404 Finnish ancestry cases, 205,693 Finnish ancestry controls, 7,404 non-Scandinavian ancestry cases, 205,693 non-Scandinavian ancestry controls, 7,404 British ancestry cases, 205,693 British ancestry controls	NA	6q25.3		rs10455872-G	0.07	7E-11		1.3	[1.22-1.37]	Affymetrix, Illumina [NR] (imputed)	N
1813	chr6	161010117	161010118	rs10455872	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Peripheral artery disease	7,114 European ancestry cases, 475,964 European ancestry controls, 4,112 East Asian ancestry cases, 173,601 East Asian ancestry controls	NA	6q25.3		rs10455872-G	NR	4E-13		0.2761	[0.2-0.35] unit increase	Affymetrix, Illumina [25844651] (imputed)	N
1813	chr6	161010117	161010118	rs10455872	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Angina pectoris	30,025 European ancestry cases, 440,906 European ancestry controls, 14,007 East Asian ancestry cases, 145,158 East Asian ancestry controls	NA	6q25.3		rs10455872-G	NR	8E-68		0.3358	[0.3-0.37] unit increase	Affymetrix, Illumina [25842036] (imputed)	N
1813	chr6	161010117	161010118	rs10455872	33910581	Zhuang Z	2021-04-29	BMC Med	Shared genetic etiology and causality between body fat percentage and cardiovascular diseases: a large-scale genome-wide cross-trait analysis.	Body fat percentage or heart failure (MTAG)	89,297 European ancestry individuals with body fat percentage, 47,309 European ancestry cases with heart failure, 930,014 European ancestry controls without heart failure, 11,419 Korean ancestry, Indian Asian ancestry, Jamaican ancestry individuals with body fat percentage	NA	6q25.3		rs10455872-?	NR	4E-9		0.1057	[0.075-0.136] unit decrease	NR [NR] (imputed)	N
1813	chr6	161010117	161010118	rs10455872	33910581	Zhuang Z	2021-04-29	BMC Med	Shared genetic etiology and causality between body fat percentage and cardiovascular diseases: a large-scale genome-wide cross-trait analysis.	Body fat percentage or coronary artery disease (MTAG)	89,297 European ancestry individuals with body fat percentage, 11,419 Korean ancestry, Indian ancestry, Jamaican ancestry individuals with body fat percentage, 61,289 European ancestry, East Asian ancestry, South Asian ancestry, African American, Hispanic cases with coronary artery disease, 134,524 European ancestry, East Asian ancestry, South Asian ancestry, African American, Hispanic controls without coronary artery disease	NA	6q25.3		rs10455872-?	NR	3E-28		0.3186	[0.27-0.37] unit decrease	NR [NR] (imputed)	N
1813	chr6	161010117	161010118	rs10455872	33730874	Said MA	2021-03-18	Arterioscler Thromb Vasc Biol	Genome-Wide Association Study and Identification of a Protective Missense Variant on Lipoprotein(a) Concentration: Protective Missense Variant on Lipoprotein(a) Concentration.	Lipoprotein (a) levels	348,591 European ancestry individuals, 6,000 African ancestry individuals, 9,116 Asian ancestry individuals, 7,505 individuals		6q25.3	LPA	rs10455872-A	NR	4E-19380		1.02095	[1.01-1.03] nmol/l decrease	NR [19000000] (imputed)	N
1813	chr6	161010117	161010118	rs10455872	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	6q25.3	LPA	rs10455872-G	0.064671	1E-82		1.37	[1.32-1.41]	NR [8126035] (imputed)	N
1813	chr6	161010117	161010118	rs10455872	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 2,680 cases, 380,970 European ancestry controls, 73,242 controls	NA	6q25.3	LPA	rs10455872-G	0.074987	4E-58		1.39	[1.33-1.44]	NR [10903881] (imputed)	N
1813	chr6	161010117	161010118	rs10455872	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Low density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	6q25.3	LPA	rs10455872-?		6E-24		0.1319	[0.11-0.16] unit increase	Illumina [31500000] (imputed)	N
1813	chr6	161010117	161010118	rs10455872	33115273	Hoekstra M	2020-10-29	Arterioscler Thromb Vasc Biol	Genome-Wide Association Study Highlights APOH as a Novel Locus for Lipoprotein(a) Levels.	Lipoprotein (a) levels	293,274 White ancestry individuals	5,465 White ancestry individuals, 6,101 South Asian ancestry individuals, 2,510 Sub-Saharan African ancestry individuals, 3,207 Black Caribbean ancestry individuals	6q25.3	LPA	rs10455872-G	0.076	6E-22136	(EA, South Asian, Afro-Caribbean)	1.7	[1.7-1.7] ln nmol/L increase	Affymetrix [9829003] (imputed)	N
1813	chr6	161010117	161010118	rs10455872	32678081	Timmers PRHJ	2020-07-16	Nat Commun	Multivariate genomic scan implicates novel loci and haem metabolism in human ageing.	Aging traits (healthspan, parental lifespan or longevity) (multivariate analysis)	at least 837,415 European ancestry individuals	NA	6q25.3	LPA	rs10455872-A	0.9267	4E-30				NR [7320282]	N
1813	chr6	161010117	161010118	rs10455872	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	6q25.3	NR	rs10455872-A	0.920929	3E-321		0.135534	[0.13-0.14] unit decrease	Affymetrix [15000001]	N
1813	chr6	161010117	161010118	rs10455872	32226016	Hu Y	2020-03-30	PLoS Genet	Minority-centric meta-analyses of blood lipid levels identify novel loci in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Total cholesterol levels	17,701 African American individuals, 22,954 Hispanics ancestry individuals, 2,387 East Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals, 22,912 European ancestry individuals	up to 71,987 African American individuals, up to 34,899 Hispanics ancestry individuals, up to 315,133 European ancestry individuals, up to 9,593 Asian ancestry individuals, up to 94,674 European ancestry, East Asian ancestry, African American, South Asian ancestry, Hispanic individuals	6q25.3		rs10455872-?	NR	2E-15		0.198	[0.15-0.25] mg/dL increase	Affymetrix, Illumina [NR] (imputed)	N
1813	chr6	161010117	161010118	rs10455872	32141789	Theriault S	2019-10-15	Circ Genom Precis Med	Genetic Association Analyses Highlight IL6, ALPL, and NAV1 As 3 New Susceptibility Genes Underlying Calcific Aortic Valve Stenosis.	Calcific aortic valve stenosis	5,115 European ancestry cases, 354,072 European ancestry controls	NA	6q25.3	LPA	rs10455872-G	0.081	6E-21		1.54	[1.45-1.63]	Affymetrix, Illumina [8000000] (imputed)	N
1813	chr6	161010117	161010118	rs10455872	31969989	Oni-Orisan A	2020-01-16	NPJ Genom Med	The impact of adjusting for baseline in pharmacogenomic genome-wide association studies of quantitative change.	Response to statins (LDL cholesterol percent change)	28,616 European ancestry individuals, 1,205 African ancestry individuals, 2,350 East Asian ancestry individuals, 2,703 Hispanic/Latino individuals	NA	6q25.3	LPA	rs10455872-G	0.068	4E-30		0.179	[0.15-0.21] unit increase	Affymetrix [13250765] (imputed)	N
1813	chr6	161010117	161010118	rs10455872	31969989	Oni-Orisan A	2020-01-16	NPJ Genom Med	The impact of adjusting for baseline in pharmacogenomic genome-wide association studies of quantitative change.	Response to statins (LDL cholesterol change)	28,616 European ancestry individuals, 1,205 African ancestry individuals, 2,350 East Asian ancestry individuals, 2,703 Hispanic/Latino individuals	NA	6q25.3	LPA	rs10455872-G	0.068	1E-33		0.042	[0.036-0.048] unit increase	Affymetrix [13250765] (imputed)	N
1813	chr6	161010117	161010118	rs10455872	31969989	Oni-Orisan A	2020-01-16	NPJ Genom Med	The impact of adjusting for baseline in pharmacogenomic genome-wide association studies of quantitative change.	Low density lipoprotein cholesterol levels (on statin treatment)	28,616 European ancestry individuals, 1,205 African ancestry individuals, 2,350 East Asian ancestry individuals, 2,703 Hispanic/Latino individuals	NA	6q25.3	LPA	rs10455872-G	0.068	2E-34		0.042	[0.036-0.048] unit increase	Affymetrix [13250765] (imputed)	N
1813	chr6	161010117	161010118	rs10455872	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	6q25.3	NR	rs10455872-?	NR	2E-15		8.734887	[6.57-10.89] unit increase	Illumina [32003504] (imputed)	N
1813	chr6	161010117	161010118	rs10455872	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	6q25.3	NR	rs10455872-?	NR	5E-17		8.089846	[6.2-9.98] unit increase	Illumina [31808917] (imputed)	N
1813	chr6	161010117	161010118	rs10455872	30642433	Timmers PR	2019-01-15	Elife	Genomics of 1 million parent lifespans implicates novel pathways and common diseases and distinguishes survival chances.	Parental lifespan	at least 500,193 European ancestry offspring	NA	6q25.3	LPA	rs10455872-A	0.92	9E-25		0.7639	[0.62-0.91] years increase	NR [up to 9000000] (imputed)	N
1813	chr6	161010117	161010118	rs10455872	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	6q25.3	LPA	rs10455872-A	0.9351	4E-41		0.0762	[0.065-0.087] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1813	chr6	161010117	161010118	rs10455872	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	6q25.3	LPA	rs10455872-A	0.9351	3E-54		0.0881	[0.077-0.099] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1813	chr6	161010117	161010118	rs10455872	29511194	Helgadottir A	2018-03-07	Nat Commun	Genome-wide analysis yields new loci associating with aortic valve stenosis.	Aortic valve stenosis	2,457 Icelandic ancestry cases, 349,342 Icelandic ancestry controls (including non-array genotyped, whole genome imputed individuals)	4,850 European ancestry cases, 451,731 European ancestry controls	6q25.3	LPA	rs10455872-G	0.062	2E-31		1.46	[1.37-1.56]	Illumina [32500000] (imputed)	N
1813	chr6	161010117	161010118	rs10455872	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6q25.3	NR	rs10455872-A	NR	2E-43		0.123	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1813	chr6	161010117	161010118	rs10455872	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6q25.3	NR	rs10455872-A	0.933	6E-41	(EA)	0.123	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1813	chr6	161010117	161010118	rs10455872	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6q25.3	NR	rs10455872-A	NR	1E-50		0.136	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1813	chr6	161010117	161010118	rs10455872	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6q25.3	NR	rs10455872-A	0.933	2E-47	(EA)	0.136	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1813	chr6	161010117	161010118	rs10455872	29227965	Pilling LC	2017-12-01	Aging (Albany NY)	Human longevity: 25 genetic loci associated in 389,166 UK biobank participants.	Parental longevity (mother's age at death)	246,941 British ancestry individuals	NA	6q25.3	LPA	rs10455872-A	0.92	2E-7		0.0265	[0.017-0.036] unit increase	Affymetrix [11535925] (imputed)	N
1813	chr6	161010117	161010118	rs10455872	29227965	Pilling LC	2017-12-01	Aging (Albany NY)	Human longevity: 25 genetic loci associated in 389,166 UK biobank participants.	Parental longevity (father's age at death)	317,652 British ancestry individuals	NA	6q25.3	LPA	rs10455872-A	0.92	5E-7		0.0247	[0.015-0.034] unit increase	Affymetrix [11535925] (imputed)	N
1813	chr6	161010117	161010118	rs10455872	29227965	Pilling LC	2017-12-01	Aging (Albany NY)	Human longevity: 25 genetic loci associated in 389,166 UK biobank participants.	Parental longevity (both parents in top 10%)	7,182 cases, 79,767 controls	NA	6q25.3	LPA	rs10455872-A	0.92	2E-8		0.0202	[0.013-0.027] unit increase	Affymetrix [11535925] (imputed)	N
1813	chr6	161010117	161010118	rs10455872	28753643	Yeo A	2017-07-28	PLoS One	Pharmacogenetic meta-analysis of baseline risk factors, pharmacodynamic, efficacy and tolerability endpoints from two large global cardiovascular outcomes trials for darapladib.	Lipoprotein phospholipase A2 activity in cardiovascular disease	22,156 European, Asian, African, Arabic, Native American, Pacific Islander and other ancestry	NA	6q25.3	LPA	rs10455872-G	0.05875	4E-13		7.22	[5.26-9.18] (nmol/min/ml) increase	Affymetrix, Illumina [13572687] (imputed)	N
1813	chr6	161010117	161010118	rs10455872	28714975	Nelson CP	2017-07-17	Nat Genet	Association analyses based on false discovery rate implicate new loci for coronary artery disease.	Coronary artery disease (myocardial infarction, percutaneous transluminal coronary angioplasty, coronary artery bypass grafting, angina or chromic ischemic heart disease)	18,467 European and unknown ancestry cases, 45,264 European and unknown ancestry controls	57,347 European and unknown ancestry cases, 219,521 European and unknown ancestry controls	6q25.3	SLC22A3, LPAL2, LPA, PLG	rs10455872-G	0.065	2E-49		1.31	[1.27-1.36]	Affymetrix [9149595] (imputed)	N
1813	chr6	161010117	161010118	rs10455872	27005778	Kettunen J	2016-03-23	Nat Commun	Genome-wide study for circulating metabolites identifies 62 loci and reveals novel systemic effects of LPA.	Metabolite levels (lipoprotein measures)	2,118 Erasmus Rucphen (founder/genetic isolate), 22,807 European ancestry individuals	NA	6q25.3	LPA	rs10455872-G	0.04	1E-12	(VLDL diameter)	0.2	[0.14-0.26] unit decrease	Affymetrix, Illumina, Perlegen [12133295] (imputed)	N
1813	chr6	161010117	161010118	rs10455872	26343387	Nikpay M	2015-09-07	Nat Genet	A comprehensive 1,000 Genomes-based genome-wide association meta-analysis of coronary artery disease.	Myocardial infarction	27,509 European ancestry cases, 130 African American cases, 278 Hispanic American cases, 10,257 South Asian ancestry cases, 288 Lebanese ancestry cases, 1,687 East Asian ancestry cases, 99,121 European ancestry controls, 2,778 African American controls, 3,337 Hispanic American controls, 12,899 South Asian ancestry controls, 466 Lebanese ancestry controls, 7,709 East Asian ancestry controls	NA	6q25.3	LPA	rs10455872-G	0.05	9E-27		1.33	[1.27-1.4]	Affymetrix, Illumina [8600000] (imputed)	N
1813	chr6	161010117	161010118	rs10455872	25350695	Postmus I	2014-10-28	Nat Commun	Pharmacogenetic meta-analysis of genome-wide association studies of LDL cholesterol response to statins.	Response to statins (LDL cholesterol change)	18,596 European ancestry individuals	23,279 European ancestry individuals	6q25.3	LPA	rs10455872-G	0.087	7E-44		0.052	[0.044-0.060] unit increase	Affymetrix, Illumina, Perlegen [at least 2500000] (imputed)	N
1813	chr6	161010117	161010118	rs10455872	24262325	Dichgans M	2013-11-21	Stroke	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Coronary artery disease or large artery stroke	2,167 Large artery stroke cases, 22,233 Coronary artery disease cases, ~ 75,921 controls	NA	6q25.3	SLC22A3, LPAL2, LPA	rs10455872-?		9E-14				Affymetrix, Illumina [up to 2500000] (imputed)	N
1813	chr6	161010117	161010118	rs10455872	24262325	Dichgans M	2013-11-21	Stroke	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Coronary artery disease or ischemic stroke	12,389 Ischemic stroke cases, 22,233 Coronary artery disease cases, ~ 88,766 controls	NA	6q25.3	SLC22A3, LPAL2, LPA	rs10455872-?		2E-12				Affymetrix, Illumina [up to 2500000] (imputed)	N
1813	chr6	161010117	161010118	rs10455872	23388002	Thanassoulis G	2013-02-17	N Engl J Med	Genetic associations with valvular calcification and aortic stenosis.	Aortic-valve calcification	6,942 European ancestry individuals	745 European ancestry individuals, 2,497 African American individuals, 2,027 Hispanic individuals, 774 Chinese ancestry individuals	6q25.3	LPA	rs10455872-G	0.07	3E-11	(EA)	2.05	[1.66-2.53]	Affymetrix, Illumina [> 2500000] (imputed)	N
1813	chr6	161010117	161010118	rs10455872	23118302	Chu AY	2012-11-01	Circ Cardiovasc Genet	Genome-wide association study evaluating lipoprotein-associated phospholipase A2 mass and activity at baseline and after rosuvastatin therapy.	Lipoprotein-associated phospholipase A2 activity change in response to statin therapy	2,673 European ancestry cases, 2,656 European ancestry controls	NA	6q25.3	LPA	rs10455872-G	0.05	2E-16	(percent change)	4.8	[0.82-2.78] percent increase	Illumina [796174]	N
1813	chr6	161010117	161010118	rs10455872	22368281	Deshmukh HA	2012-02-24	J Lipid Res	Genome-wide association study of genetic determinants of LDL-c response to atorvastatin therapy: importance of Lp(a).	Response to statin therapy	2,702 European ancestry individuals	2,550 European ancestry individuals	6q25.3	LPA	rs10455872-A	NR	1E-9		0.28	[0.20-0.36] mmol/L decrease	Illumina, Perlegen [NR] (imputed)	N
1813	chr6	161010117	161010118	rs10455872	22331829	Chasman DI	2012-02-13	Circ Cardiovasc Genet	Genetic determinants of statin-induced low-density lipoprotein cholesterol reduction: the Justification for the Use of Statins in Prevention: an Intervention Trial Evaluating Rosuvastatin (JUPITER) trial.	Response to statins (LDL cholesterol change)	6,989 European ancestry individuals	NA	6q25.3	LPA	rs10455872-?	NR	5E-15	(fractional LDL-C reduction)	6.8	[4.45-9.15] % increase	Illumina [814418]	N
1813	chr6	161010117	161010118	rs10455872	21900290	Qi Q	2011-09-06	Eur Heart J	Genetic variants, plasma lipoprotein(a) levels, and risk of cardiovascular morbidity and mortality among two prospective cohorts of type 2 diabetes.	Lp (a) levels	1,450 European ancestry individuals	NA	6q25.3	LPA	rs10455872-G	0.07	5E-39		1.28	[1.08-1.48] mg/dL increase	Illumina [~ 2500000] (imputed)	N
1813	chr6	161010149	161010150	rs41272078	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs41272078-T	NR	2E-641		0.3565	[0.34-0.37] unit increase	Affymetrix [9000000] (imputed)	N
1813	chr6	161010150	161010151	rs115739169	34376796	Sun Q	2021-08-11	J Hum Genet	Analyses of biomarker traits in diverse UK biobank participants identify associations missed by European-centric analysis strategies.	Lipoprotein (a) levels	9,354 African ancestry individuals	1,599 African American or Afro-Caribbean individuals	6q25.3		rs115739169-A	0.0127	6E-62		1.22	[1.08-1.36] nmol/L increase	NR [NR] (imputed)	N
1813	chr6	161011136	161011137	rs117935574	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs117935574-T	NR	3E-69		0.1536	[0.14-0.17] unit increase	Affymetrix [9000000] (imputed)	N
1813	chr6	161011136	161011137	rs117935574	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	6q25.3	NR	rs117935574-T	NR	2E-9		0.0498	[0.034-0.066] unit decrease	Affymetrix [9000000] (imputed)	N
1813	chr6	161011319	161011320	rs185882981	30108283	Granot-Hershkovitz E	2018-08-14	Eur J Hum Genet	A study of Kibbutzim in Israel reveals risk factors for cardiometabolic traits and subtle population structure.	Lipoprotein (a) levels	733 Ashkenazi Jewish ancestry individuals (founder/population isolate), 168 Sephardi Jewish, North African Jewish, Middle Eastern, Caucasian and Yemenite Jewish individuals	NA	6q25.3	LPA	rs185882981-A	NR	1E-6		0.779	[0.46-1.09] unit decrease	Illumina [212505] (imputed)	N
1813	chr6	161011906	161011907	rs74334585	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs74334585-T	NR	2E-24		0.1025	[0.083-0.122] unit decrease	Affymetrix [9000000] (imputed)	N
1813	chr6	161011992	161011993	rs41267819	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs41267819-A	NR	9E-12		0.5058	[0.36-0.65] unit decrease	Affymetrix [9000000] (imputed)	N
1813	chr6	161011998	161011999	rs200376184	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs200376184-C	NR	2E-12		0.3594	[0.26-0.46] unit increase	Affymetrix [9000000] (imputed)	N
1813	chr6	161013012	161013013	rs140570886	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	VLDL cholesterol levels	115,082 European ancestry individuals	NA	6q25.3		rs140570886-T	0.984514	1E-49		0.250826	[0.22-0.28] unit increase	NR [11722792] (imputed)	N
1813	chr6	161013012	161013013	rs140570886	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very small VLDL	115,082 European ancestry individuals	NA	6q25.3		rs140570886-T	0.984514	7E-40		0.218483	[0.19-0.25] unit increase	NR [11722792] (imputed)	N
1813	chr6	161013012	161013013	rs140570886	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small VLDL	115,082 European ancestry individuals	NA	6q25.3		rs140570886-T	0.984514	2E-77		0.305108	[0.27-0.34] unit increase	NR [11722792] (imputed)	N
1813	chr6	161013012	161013013	rs140570886	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small HDL	115,082 European ancestry individuals	NA	6q25.3		rs140570886-T	0.984514	5E-45		0.230749	[0.2-0.26] unit increase	NR [11722792] (imputed)	N
1813	chr6	161013012	161013013	rs140570886	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium VLDL	115,082 European ancestry individuals	NA	6q25.3		rs140570886-T	0.984514	1E-96		0.343342	[0.31-0.38] unit increase	NR [11722792] (imputed)	N
1813	chr6	161013012	161013013	rs140570886	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium LDL	115,082 European ancestry individuals	NA	6q25.3		rs140570886-T	0.984514	7E-64		0.279594	[0.25-0.31] unit increase	NR [11722792] (imputed)	N
1813	chr6	161013012	161013013	rs140570886	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large LDL	115,082 European ancestry individuals	NA	6q25.3		rs140570886-T	0.984514	3E-25		0.172442	[0.14-0.21] unit increase	NR [11722792] (imputed)	N
1813	chr6	161013012	161013013	rs140570886	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in LDL	115,082 European ancestry individuals	NA	6q25.3		rs140570886-T	0.984514	1E-43		0.230292	[0.2-0.26] unit increase	NR [11722792] (imputed)	N
1813	chr6	161013012	161013013	rs140570886	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in IDL	115,082 European ancestry individuals	NA	6q25.3		rs140570886-T	0.984514	7E-24		0.167114	[0.13-0.2] unit increase	NR [11722792] (imputed)	N
1813	chr6	161013012	161013013	rs140570886	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total phospholipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	6q25.3		rs140570886-T	0.984514	4E-23		0.15999	[0.13-0.19] unit increase	NR [11722792] (imputed)	N
1813	chr6	161013012	161013013	rs140570886	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very small VLDL	115,082 European ancestry individuals	NA	6q25.3		rs140570886-T	0.984514	2E-11		0.111392	[0.079-0.144] unit increase	NR [11722792] (imputed)	N
1813	chr6	161013012	161013013	rs140570886	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small VLDL	115,082 European ancestry individuals	NA	6q25.3		rs140570886-T	0.984514	3E-49		0.24716	[0.21-0.28] unit increase	NR [11722792] (imputed)	N
1813	chr6	161013012	161013013	rs140570886	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small LDL	115,082 European ancestry individuals	NA	6q25.3		rs140570886-T	0.984514	8E-21		0.158915	[0.13-0.19] unit increase	NR [11722792] (imputed)	N
1813	chr6	161013012	161013013	rs140570886	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small HDL	115,082 European ancestry individuals	NA	6q25.3		rs140570886-T	0.984514	1E-8		0.0970752	[0.064-0.13] unit increase	NR [11722792] (imputed)	N
1813	chr6	161013012	161013013	rs140570886	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium VLDL	115,082 European ancestry individuals	NA	6q25.3		rs140570886-T	0.984514	2E-63		0.283011	[0.25-0.32] unit increase	NR [11722792] (imputed)	N
1813	chr6	161013012	161013013	rs140570886	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium LDL	115,082 European ancestry individuals	NA	6q25.3		rs140570886-T	0.984514	4E-17		0.143112	[0.11-0.18] unit increase	NR [11722792] (imputed)	N
1813	chr6	161013012	161013013	rs140570886	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	6q25.3		rs140570886-T	0.984514	4E-41		0.224284	[0.19-0.26] unit increase	NR [11722792] (imputed)	N
1813	chr6	161013012	161013013	rs140570886	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large VLDL	115,082 European ancestry individuals	NA	6q25.3		rs140570886-T	0.984514	2E-110		0.365599	[0.33-0.4] unit increase	NR [11722792] (imputed)	N
1813	chr6	161013012	161013013	rs140570886	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in VLDL	115,082 European ancestry individuals	NA	6q25.3		rs140570886-T	0.984514	2E-105		0.361954	[0.33-0.39] unit increase	NR [11722792] (imputed)	N
1813	chr6	161013012	161013013	rs140570886	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in LDL	115,082 European ancestry individuals	NA	6q25.3		rs140570886-T	0.984514	1E-8		0.0959864	[0.063-0.129] unit increase	NR [11722792] (imputed)	N
1813	chr6	161013012	161013013	rs140570886	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total free cholesterol levels	115,082 European ancestry individuals	NA	6q25.3		rs140570886-T	0.984514	7E-16		0.133922	[0.1-0.17] unit increase	NR [11722792] (imputed)	N
1813	chr6	161013012	161013013	rs140570886	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total fatty acid levels	115,006 European ancestry individuals	NA	6q25.3		rs140570886-T	0.984503	1E-77		0.312199	[0.28-0.35] unit increase	NR [11722792] (imputed)	N
1813	chr6	161013012	161013013	rs140570886	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholines levels	115,006 European ancestry individuals	NA	6q25.3		rs140570886-T	0.984503	2E-14		0.122482	[0.091-0.154] unit increase	NR [11722792] (imputed)	N
1813	chr6	161013012	161013013	rs140570886	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Saturated fatty acid levels	115,006 European ancestry individuals	NA	6q25.3		rs140570886-T	0.984503	2E-76		0.309662	[0.28-0.34] unit increase	NR [11722792] (imputed)	N
1813	chr6	161013012	161013013	rs140570886	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of apolipoprotein B to apolipoprotein A1 levels	115,082 European ancestry individuals	NA	6q25.3		rs140570886-T	0.984514	2E-10		0.106013	[0.073-0.139] unit increase	NR [11722792] (imputed)	N
1813	chr6	161013012	161013013	rs140570886	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Polyunsaturated fatty acid levels	115,006 European ancestry individuals	NA	6q25.3		rs140570886-T	0.984503	2E-44		0.2308	[0.2-0.26] unit increase	NR [11722792] (imputed)	N
1813	chr6	161013012	161013013	rs140570886	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	6q25.3		rs140570886-T	0.984672	3E-12		0.119707	[0.086-0.153] unit increase	NR [11722792] (imputed)	N
1813	chr6	161013012	161013013	rs140570886	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	6q25.3		rs140570886-T	0.984517	8E-32		0.19345	[0.16-0.23] unit increase	NR [11722792] (imputed)	N
1813	chr6	161013012	161013013	rs140570886	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	6q25.3		rs140570886-T	0.984514	1E-21		0.162224	[0.13-0.2] unit decrease	NR [11722792] (imputed)	N
1813	chr6	161013012	161013013	rs140570886	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very small VLDL	115,082 European ancestry individuals	NA	6q25.3		rs140570886-T	0.984514	3E-13		0.121545	[0.089-0.154] unit increase	NR [11722792] (imputed)	N
1813	chr6	161013012	161013013	rs140570886	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small VLDL	115,082 European ancestry individuals	NA	6q25.3		rs140570886-T	0.984514	2E-32		0.200553	[0.17-0.23] unit increase	NR [11722792] (imputed)	N
1813	chr6	161013012	161013013	rs140570886	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small HDL	115,082 European ancestry individuals	NA	6q25.3		rs140570886-T	0.984514	1E-9		0.101877	[0.069-0.135] unit increase	NR [11722792] (imputed)	N
1813	chr6	161013012	161013013	rs140570886	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium VLDL	115,082 European ancestry individuals	NA	6q25.3		rs140570886-T	0.984514	9E-46		0.240559	[0.21-0.27] unit increase	NR [11722792] (imputed)	N
1813	chr6	161013012	161013013	rs140570886	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium LDL	115,082 European ancestry individuals	NA	6q25.3		rs140570886-T	0.984514	4E-11		0.11245	[0.079-0.146] unit increase	NR [11722792] (imputed)	N
1813	chr6	161013012	161013013	rs140570886	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large VLDL	115,082 European ancestry individuals	NA	6q25.3		rs140570886-T	0.984514	5E-99		0.345393	[0.31-0.38] unit increase	NR [11722792] (imputed)	N
1813	chr6	161013012	161013013	rs140570886	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in VLDL	115,082 European ancestry individuals	NA	6q25.3		rs140570886-T	0.984514	1E-82		0.322319	[0.29-0.36] unit increase	NR [11722792] (imputed)	N
1813	chr6	161013012	161013013	rs140570886	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphoglycerides levels	115,006 European ancestry individuals	NA	6q25.3		rs140570886-T	0.984503	3E-18		0.139681	[0.11-0.17] unit increase	NR [11722792] (imputed)	N
1813	chr6	161013012	161013013	rs140570886	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphatidylcholine levels	115,006 European ancestry individuals	NA	6q25.3		rs140570886-T	0.984503	2E-12		0.11202	[0.081-0.143] unit increase	NR [11722792] (imputed)	N
1813	chr6	161013012	161013013	rs140570886	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-6 fatty acid levels	115,006 European ancestry individuals	NA	6q25.3		rs140570886-T	0.984503	8E-42		0.224634	[0.19-0.26] unit increase	NR [11722792] (imputed)	N
1813	chr6	161013012	161013013	rs140570886	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-3 fatty acid levels	115,006 European ancestry individuals	NA	6q25.3		rs140570886-T	0.984503	3E-18		0.142069	[0.11-0.17] unit increase	NR [11722792] (imputed)	N
1813	chr6	161013012	161013013	rs140570886	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Monounsaturated fatty acid levels	115,006 European ancestry individuals	NA	6q25.3		rs140570886-T	0.984503	4E-89		0.334628	[0.3-0.37] unit increase	NR [11722792] (imputed)	N
1813	chr6	161013012	161013013	rs140570886	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Linoleic acid levels	115,006 European ancestry individuals	NA	6q25.3		rs140570886-T	0.984503	2E-47		0.241198	[0.21-0.27] unit increase	NR [11722792] (imputed)	N
1813	chr6	161013012	161013013	rs140570886	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	6q25.3		rs140570886-T	0.984514	1E-18		0.150084	[0.12-0.18] unit increase	NR [11722792] (imputed)	N
1813	chr6	161013012	161013013	rs140570886	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	6q25.3		rs140570886-T	0.984514	1E-32		0.202078	[0.17-0.24] unit increase	NR [11722792] (imputed)	N
1813	chr6	161013012	161013013	rs140570886	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	6q25.3		rs140570886-T	0.984514	9E-95		0.338454	[0.31-0.37] unit increase	NR [11722792] (imputed)	N
1813	chr6	161013012	161013013	rs140570886	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in VLDL	115,082 European ancestry individuals	NA	6q25.3		rs140570886-T	0.984514	1E-73		0.305256	[0.27-0.34] unit increase	NR [11722792] (imputed)	N
1813	chr6	161013012	161013013	rs140570886	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very small VLDL particles	115,082 European ancestry individuals	NA	6q25.3		rs140570886-T	0.984514	1E-9		0.101428	[0.069-0.134] unit increase	NR [11722792] (imputed)	N
1813	chr6	161013012	161013013	rs140570886	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small VLDL particles	115,082 European ancestry individuals	NA	6q25.3		rs140570886-T	0.984514	3E-51		0.251367	[0.22-0.28] unit increase	NR [11722792] (imputed)	N
1813	chr6	161013012	161013013	rs140570886	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small LDL particles	115,082 European ancestry individuals	NA	6q25.3		rs140570886-T	0.984514	4E-32		0.200518	[0.17-0.23] unit increase	NR [11722792] (imputed)	N
1813	chr6	161013012	161013013	rs140570886	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium VLDL particles	115,082 European ancestry individuals	NA	6q25.3		rs140570886-T	0.984514	6E-52		0.256707	[0.22-0.29] unit increase	NR [11722792] (imputed)	N
1813	chr6	161013012	161013013	rs140570886	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium LDL particles	115,082 European ancestry individuals	NA	6q25.3		rs140570886-T	0.984514	3E-25		0.176612	[0.14-0.21] unit increase	NR [11722792] (imputed)	N
1813	chr6	161013012	161013013	rs140570886	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large VLDL particles	115,082 European ancestry individuals	NA	6q25.3		rs140570886-T	0.984514	7E-110		0.36418	[0.33-0.4] unit increase	NR [11722792] (imputed)	N
1813	chr6	161013012	161013013	rs140570886	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of VLDL particles	115,082 European ancestry individuals	NA	6q25.3		rs140570886-T	0.984514	2E-51		0.253981	[0.22-0.29] unit increase	NR [11722792] (imputed)	N
1813	chr6	161013012	161013013	rs140570886	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of LDL particles	115,082 European ancestry individuals	NA	6q25.3		rs140570886-T	0.984514	1E-18		0.149359	[0.12-0.18] unit increase	NR [11722792] (imputed)	N
1813	chr6	161013012	161013013	rs140570886	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	6q25.3		rs140570886-T	0.984514	6E-28		0.186529	[0.15-0.22] unit increase	NR [11722792] (imputed)	N
1813	chr6	161013012	161013013	rs140570886	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in IDL	115,082 European ancestry individuals	NA	6q25.3		rs140570886-T	0.984514	2E-18		0.145389	[0.11-0.18] unit decrease	NR [11722792] (imputed)	N
1813	chr6	161013012	161013013	rs140570886	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large VLDL	115,082 European ancestry individuals	NA	6q25.3		rs140570886-T	0.984514	6E-76		0.307962	[0.28-0.34] unit increase	NR [11722792] (imputed)	N
1813	chr6	161013012	161013013	rs140570886	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small VLDL	115,082 European ancestry individuals	NA	6q25.3		rs140570886-T	0.984514	4E-20		0.155411	[0.12-0.19] unit increase	NR [11722792] (imputed)	N
1813	chr6	161013012	161013013	rs140570886	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small LDL	115,082 European ancestry individuals	NA	6q25.3		rs140570886-T	0.984514	3E-32		0.200744	[0.17-0.23] unit increase	NR [11722792] (imputed)	N
1813	chr6	161013012	161013013	rs140570886	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium LDL	115,082 European ancestry individuals	NA	6q25.3		rs140570886-T	0.984514	7E-25		0.175081	[0.14-0.21] unit increase	NR [11722792] (imputed)	N
1813	chr6	161013012	161013013	rs140570886	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large VLDL	115,082 European ancestry individuals	NA	6q25.3		rs140570886-T	0.984514	3E-61		0.276728	[0.24-0.31] unit increase	NR [11722792] (imputed)	N
1813	chr6	161013012	161013013	rs140570886	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in VLDL	115,082 European ancestry individuals	NA	6q25.3		rs140570886-T	0.984514	2E-33		0.204743	[0.17-0.24] unit increase	NR [11722792] (imputed)	N
1813	chr6	161013012	161013013	rs140570886	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	6q25.3		rs140570886-T	0.984514	8E-100		0.351188	[0.32-0.38] unit increase	NR [11722792] (imputed)	N
1813	chr6	161013012	161013013	rs140570886	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	6q25.3		rs140570886-T	0.984514	6E-20		0.154996	[0.12-0.19] unit increase	NR [11722792] (imputed)	N
1813	chr6	161013012	161013013	rs140570886	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small LDL	115,082 European ancestry individuals	NA	6q25.3		rs140570886-T	0.984514	2E-18		0.149502	[0.12-0.18] unit increase	NR [11722792] (imputed)	N
1813	chr6	161013012	161013013	rs140570886	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	6q25.3		rs140570886-T	0.984514	6E-16		0.137847	[0.1-0.17] unit increase	NR [11722792] (imputed)	N
1813	chr6	161013012	161013013	rs140570886	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	6q25.3		rs140570886-T	0.984514	1E-78		0.311148	[0.28-0.34] unit increase	NR [11722792] (imputed)	N
1813	chr6	161013012	161013013	rs140570886	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein B levels	115,082 European ancestry individuals	NA	6q25.3		rs140570886-T	0.984514	6E-17		0.141754	[0.11-0.17] unit increase	NR [11722792] (imputed)	N
1813	chr6	161013012	161013013	rs140570886	33893285	Guindo-Martinez M	2021-04-23	Nat Commun	The impact of non-additive genetic associations on age-related complex diseases.	Dyslipidemia	30,244 European ancestry cases, 26,393 European ancestry controls	NA	6q25.3		rs140570886-C	0.014	5E-19		1.66		Affymetrix [15679186] (imputed)	N
1813	chr6	161013012	161013013	rs140570886	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	6q25.3	NR	rs140570886-C	NR	6E-11		0.0679	[0.048-0.088] unit increase	Affymetrix [9000000] (imputed)	N
1813	chr6	161013012	161013013	rs140570886	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	6q25.3	LPA	rs140570886-?	NR	3E-34		0.131	[0.11-0.15] unit decrease	Affymetrix [5701386] (imputed)	N
1813	chr6	161013012	161013013	rs140570886	31919418	Shah S	2020-01-09	Nat Commun	Genome-wide association and Mendelian randomisation analysis provide insights into the pathogenesis of heart failure.	Heart failure	47,309 European ancestry cases, 930,014 European ancestry controls	NA	6q25.3	LPA	rs140570886-C	0.02	8E-11		1.24	[1.16-1.3]	Affymetrix, Illumina [8246881] (imputed)	N
1813	chr6	161013012	161013013	rs140570886	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (vasodilators used in cardiac diseases)	5,546 European ancestry cases, 237,113 European ancestry controls	NA	6q25.3	LPA	rs140570886-C	0.0155529	2E-10		0.49516246	[0.34-0.65] unit increase	Affymetrix [7288503] (imputed)	N
1813	chr6	161013012	161013013	rs140570886	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (salicylic acid and derivatives)	61,583 European ancestry cases, 50,427 European ancestry controls	NA	6q25.3	LPA	rs140570886-C	0.0159652	2E-12		0.2234316	[0.16-0.29] unit increase	Affymetrix [7288503] (imputed)	N
1813	chr6	161013012	161013013	rs140570886	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls	NA	6q25.3	LPA	rs140570886-C	0.0153689	3E-9		0.19912294	[0.13-0.26] unit increase	Affymetrix [7288503] (imputed)	N
1813	chr6	161013012	161013013	rs140570886	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (antithrombotic agents)	67,653 European ancestry cases, 85,986 European ancestry controls	NA	6q25.3	LPA	rs140570886-C	0.0155987	3E-18		0.23748341	[0.18-0.29] unit increase	Affymetrix [7288503] (imputed)	N
1813	chr6	161013012	161013013	rs140570886	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	6q25.3	LPA	rs140570886-C	0.0148633	4E-9		0.14684165	[0.098-0.196] unit increase	Affymetrix [7288503] (imputed)	N
1813	chr6	161013012	161013013	rs140570886	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls	NA	6q25.3	LPA	rs140570886-C	0.0154611	1E-41		0.30737686	[0.26-0.35] unit increase	Affymetrix [7288503] (imputed)	N
1813	chr6	161013012	161013013	rs140570886	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	6q25.3		rs140570886-?	NR	1E-23				NR [~ 8900000] (imputed)	N
1813	chr6	161013012	161013013	rs140570886	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	6q25.3	LPA	rs140570886-T	0.983	3E-87		0.481	[0.43-0.53] unit decrease	Affymetrix [7947838] (imputed)	N
1813	chr6	161013012	161013013	rs140570886	28714974	Klarin D	2017-07-17	Nat Genet	Genetic analysis in UK Biobank links insulin resistance and transendothelial migration pathways to coronary artery disease.	Coronary artery disease	4,831 European ancestry cases, 115,455 European ancestry controls	up to 60,801 European and unknown ancestry cases, up to 123,504 European and unknown ancestry controls	6q25.3	LPA	rs140570886-C	0.02	2E-21		1.92	[1.68-2.20]	Affymetrix [9061845] (imputed)	N
1813	chr6	161013012	161013013	rs140570886	28512139	Mack S	2017-05-16	J Lipid Res	A genome-wide association meta-analysis on lipoprotein (a) concentrations adjusted for apolipoprotein (a) isoforms.	Lipoprotein(a) levels adjusted for apolipoprotein(a) isoforms	13,781 European ancestry individuals	NA	6q25.3	LPA	rs140570886-C		2E-210		43.43	[41.45-45.41] unit increase	Affymetrix, Illumina [at least 7600000] (imputed)	N
1813	chr6	161013825	161013826	rs140306630	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs140306630-T	NR	3E-159		0.2908	[0.27-0.31] unit increase	Affymetrix [9000000] (imputed)	N
1813	chr6	161015984	161015985	rs142231215	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	VLDL cholesterol levels	115,082 European ancestry individuals	NA	6q25.3		rs142231215-G	0.99519	1E-9		0.188329	[0.13-0.25] unit increase	NR [11722792] (imputed)	N
1813	chr6	161015984	161015985	rs142231215	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	6q25.3		rs142231215-G	0.995217	4E-16		0.25587	[0.19-0.32] unit increase	NR [11722792] (imputed)	N
1813	chr6	161015984	161015985	rs142231215	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large VLDL	115,082 European ancestry individuals	NA	6q25.3		rs142231215-G	0.99519	6E-17		0.247978	[0.19-0.31] unit increase	NR [11722792] (imputed)	N
1813	chr6	161015984	161015985	rs142231215	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small VLDL	115,082 European ancestry individuals	NA	6q25.3		rs142231215-G	0.99519	2E-8		0.167412	[0.11-0.23] unit increase	NR [11722792] (imputed)	N
1813	chr6	161015984	161015985	rs142231215	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small LDL	115,082 European ancestry individuals	NA	6q25.3		rs142231215-G	0.99519	4E-14		0.227678	[0.17-0.29] unit increase	NR [11722792] (imputed)	N
1813	chr6	161015984	161015985	rs142231215	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium VLDL	115,082 European ancestry individuals	NA	6q25.3		rs142231215-G	0.99519	1E-12		0.214272	[0.16-0.27] unit increase	NR [11722792] (imputed)	N
1813	chr6	161015984	161015985	rs142231215	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium LDL	115,082 European ancestry individuals	NA	6q25.3		rs142231215-G	0.99519	8E-9		0.175093	[0.12-0.23] unit increase	NR [11722792] (imputed)	N
1813	chr6	161015984	161015985	rs142231215	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large VLDL	115,082 European ancestry individuals	NA	6q25.3		rs142231215-G	0.99519	3E-16		0.244292	[0.19-0.3] unit increase	NR [11722792] (imputed)	N
1813	chr6	161015984	161015985	rs142231215	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6q25.3		rs142231215-G	0.99519	2E-24		0.305044	[0.25-0.36] unit increase	NR [11722792] (imputed)	N
1813	chr6	161015984	161015985	rs142231215	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in VLDL	115,082 European ancestry individuals	NA	6q25.3		rs142231215-G	0.99519	1E-16		0.24782	[0.19-0.31] unit increase	NR [11722792] (imputed)	N
1813	chr6	161015984	161015985	rs142231215	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total triglycerides levels	115,082 European ancestry individuals	NA	6q25.3		rs142231215-G	0.99519	2E-14		0.228618	[0.17-0.29] unit increase	NR [11722792] (imputed)	N
1813	chr6	161015984	161015985	rs142231215	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large VLDL	115,082 European ancestry individuals	NA	6q25.3		rs142231215-G	0.99519	7E-17		0.249257	[0.19-0.31] unit increase	NR [11722792] (imputed)	N
1813	chr6	161015984	161015985	rs142231215	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small VLDL	115,082 European ancestry individuals	NA	6q25.3		rs142231215-G	0.99519	3E-8		0.17047	[0.11-0.23] unit increase	NR [11722792] (imputed)	N
1813	chr6	161015984	161015985	rs142231215	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium VLDL	115,082 European ancestry individuals	NA	6q25.3		rs142231215-G	0.99519	3E-11		0.205603	[0.15-0.27] unit increase	NR [11722792] (imputed)	N
1813	chr6	161015984	161015985	rs142231215	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large VLDL	115,082 European ancestry individuals	NA	6q25.3		rs142231215-G	0.99519	7E-15		0.23336	[0.17-0.29] unit increase	NR [11722792] (imputed)	N
1813	chr6	161015984	161015985	rs142231215	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6q25.3		rs142231215-G	0.99519	8E-22		0.286962	[0.23-0.35] unit increase	NR [11722792] (imputed)	N
1813	chr6	161015984	161015985	rs142231215	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in VLDL	115,082 European ancestry individuals	NA	6q25.3		rs142231215-G	0.99519	5E-15		0.237729	[0.18-0.3] unit increase	NR [11722792] (imputed)	N
1813	chr6	161015984	161015985	rs142231215	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total fatty acid levels	115,006 European ancestry individuals	NA	6q25.3		rs142231215-G	0.995186	3E-10		0.19282	[0.13-0.25] unit increase	NR [11722792] (imputed)	N
1813	chr6	161015984	161015985	rs142231215	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Saturated fatty acid levels	115,006 European ancestry individuals	NA	6q25.3		rs142231215-G	0.995186	3E-9		0.181504	[0.12-0.24] unit increase	NR [11722792] (imputed)	N
1813	chr6	161015984	161015985	rs142231215	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	6q25.3		rs142231215-G	0.995186	1E-12		0.203935	[0.15-0.26] unit increase	NR [11722792] (imputed)	N
1813	chr6	161015984	161015985	rs142231215	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6q25.3		rs142231215-G	0.99519	2E-13		0.229558	[0.17-0.29] unit decrease	NR [11722792] (imputed)	N
1813	chr6	161015984	161015985	rs142231215	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	6q25.3		rs142231215-G	0.99519	2E-10		0.197635	[0.14-0.26] unit decrease	NR [11722792] (imputed)	N
1813	chr6	161015984	161015985	rs142231215	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large VLDL	115,082 European ancestry individuals	NA	6q25.3		rs142231215-G	0.99519	7E-17		0.249881	[0.19-0.31] unit increase	NR [11722792] (imputed)	N
1813	chr6	161015984	161015985	rs142231215	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium VLDL	115,082 European ancestry individuals	NA	6q25.3		rs142231215-G	0.99519	8E-10		0.190934	[0.13-0.25] unit increase	NR [11722792] (imputed)	N
1813	chr6	161015984	161015985	rs142231215	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large VLDL	115,082 European ancestry individuals	NA	6q25.3		rs142231215-G	0.99519	2E-13		0.221389	[0.16-0.28] unit increase	NR [11722792] (imputed)	N
1813	chr6	161015984	161015985	rs142231215	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6q25.3		rs142231215-G	0.99519	3E-19		0.266836	[0.21-0.33] unit increase	NR [11722792] (imputed)	N
1813	chr6	161015984	161015985	rs142231215	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in VLDL	115,082 European ancestry individuals	NA	6q25.3		rs142231215-G	0.99519	5E-13		0.221283	[0.16-0.28] unit increase	NR [11722792] (imputed)	N
1813	chr6	161015984	161015985	rs142231215	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Monounsaturated fatty acid levels	115,006 European ancestry individuals	NA	6q25.3		rs142231215-G	0.995186	2E-10		0.195369	[0.14-0.26] unit increase	NR [11722792] (imputed)	N
1813	chr6	161015984	161015985	rs142231215	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6q25.3		rs142231215-G	0.99519	5E-8		0.163262	[0.1-0.22] unit decrease	NR [11722792] (imputed)	N
1813	chr6	161015984	161015985	rs142231215	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	6q25.3		rs142231215-G	0.99519	4E-9		0.174102	[0.12-0.23] unit decrease	NR [11722792] (imputed)	N
1813	chr6	161015984	161015985	rs142231215	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	6q25.3		rs142231215-G	0.995217	2E-20		0.287141	[0.23-0.35] unit decrease	NR [11722792] (imputed)	N
1813	chr6	161015984	161015985	rs142231215	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	6q25.3		rs142231215-G	0.99519	1E-16		0.24902	[0.19-0.31] unit increase	NR [11722792] (imputed)	N
1813	chr6	161015984	161015985	rs142231215	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	6q25.3		rs142231215-G	0.99519	3E-8		0.173019	[0.11-0.23] unit increase	NR [11722792] (imputed)	N
1813	chr6	161015984	161015985	rs142231215	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	6q25.3		rs142231215-G	0.99519	2E-13		0.221843	[0.16-0.28] unit increase	NR [11722792] (imputed)	N
1813	chr6	161015984	161015985	rs142231215	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6q25.3		rs142231215-G	0.99519	3E-19		0.267537	[0.21-0.33] unit increase	NR [11722792] (imputed)	N
1813	chr6	161015984	161015985	rs142231215	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in VLDL	115,082 European ancestry individuals	NA	6q25.3		rs142231215-G	0.99519	2E-12		0.21798	[0.16-0.28] unit increase	NR [11722792] (imputed)	N
1813	chr6	161015984	161015985	rs142231215	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large VLDL particles	115,082 European ancestry individuals	NA	6q25.3		rs142231215-G	0.99519	6E-16		0.241181	[0.18-0.3] unit increase	NR [11722792] (imputed)	N
1813	chr6	161015984	161015985	rs142231215	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small VLDL particles	115,082 European ancestry individuals	NA	6q25.3		rs142231215-G	0.99519	1E-8		0.174315	[0.11-0.23] unit increase	NR [11722792] (imputed)	N
1813	chr6	161015984	161015985	rs142231215	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small LDL particles	115,082 European ancestry individuals	NA	6q25.3		rs142231215-G	0.99519	2E-9		0.188189	[0.13-0.25] unit increase	NR [11722792] (imputed)	N
1813	chr6	161015984	161015985	rs142231215	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium VLDL particles	115,082 European ancestry individuals	NA	6q25.3		rs142231215-G	0.99519	1E-10		0.20052	[0.14-0.26] unit increase	NR [11722792] (imputed)	N
1813	chr6	161015984	161015985	rs142231215	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium LDL particles	115,082 European ancestry individuals	NA	6q25.3		rs142231215-G	0.99519	2E-8		0.174211	[0.11-0.24] unit increase	NR [11722792] (imputed)	N
1813	chr6	161015984	161015985	rs142231215	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large VLDL particles	115,082 European ancestry individuals	NA	6q25.3		rs142231215-G	0.99519	9E-15		0.232286	[0.17-0.29] unit increase	NR [11722792] (imputed)	N
1813	chr6	161015984	161015985	rs142231215	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of chylomicrons and extremely large VLDL particles	115,082 European ancestry individuals	NA	6q25.3		rs142231215-G	0.99519	3E-20		0.274864	[0.22-0.33] unit increase	NR [11722792] (imputed)	N
1813	chr6	161015984	161015985	rs142231215	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of VLDL particles	115,082 European ancestry individuals	NA	6q25.3		rs142231215-G	0.99519	2E-9		0.18399	[0.12-0.24] unit increase	NR [11722792] (imputed)	N
1813	chr6	161015984	161015985	rs142231215	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	6q25.3		rs142231215-G	0.995218	1E-9		0.180807	[0.12-0.24] unit decrease	NR [11722792] (imputed)	N
1813	chr6	161015984	161015985	rs142231215	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6q25.3		rs142231215-G	0.99519	7E-13		0.223121	[0.16-0.28] unit increase	NR [11722792] (imputed)	N
1813	chr6	161015984	161015985	rs142231215	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	6q25.3		rs142231215-G	0.99519	1E-13		0.229409	[0.17-0.29] unit increase	NR [11722792] (imputed)	N
1813	chr6	161015984	161015985	rs142231215	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	6q25.3		rs142231215-G	0.995193	2E-8		0.168276	[0.11-0.23] unit decrease	NR [11722792] (imputed)	N
1813	chr6	161015984	161015985	rs142231215	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	6q25.3		rs142231215-G	0.995217	2E-13		0.231301	[0.17-0.29] unit decrease	NR [11722792] (imputed)	N
1813	chr6	161015984	161015985	rs142231215	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large VLDL	115,082 European ancestry individuals	NA	6q25.3		rs142231215-G	0.99519	1E-12		0.216643	[0.16-0.28] unit increase	NR [11722792] (imputed)	N
1813	chr6	161015984	161015985	rs142231215	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small LDL	115,082 European ancestry individuals	NA	6q25.3		rs142231215-G	0.99519	8E-9		0.17971	[0.12-0.24] unit increase	NR [11722792] (imputed)	N
1813	chr6	161015984	161015985	rs142231215	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large VLDL	115,082 European ancestry individuals	NA	6q25.3		rs142231215-G	0.99519	3E-10		0.192624	[0.13-0.25] unit increase	NR [11722792] (imputed)	N
1813	chr6	161015984	161015985	rs142231215	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6q25.3		rs142231215-G	0.99519	4E-18		0.260281	[0.2-0.32] unit increase	NR [11722792] (imputed)	N
1813	chr6	161015984	161015985	rs142231215	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	6q25.3		rs142231215-G	0.995218	2E-8		0.168305	[0.11-0.23] unit decrease	NR [11722792] (imputed)	N
1813	chr6	161015984	161015985	rs142231215	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	6q25.3		rs142231215-G	0.995217	1E-18		0.275346	[0.21-0.34] unit decrease	NR [11722792] (imputed)	N
1813	chr6	161015984	161015985	rs142231215	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	6q25.3		rs142231215-G	0.99519	8E-15		0.235645	[0.18-0.3] unit increase	NR [11722792] (imputed)	N
1813	chr6	161015984	161015985	rs142231215	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	6q25.3		rs142231215-G	0.99519	5E-12		0.209519	[0.15-0.27] unit increase	NR [11722792] (imputed)	N
1813	chr6	161015984	161015985	rs142231215	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6q25.3		rs142231215-G	0.99519	6E-19		0.265881	[0.21-0.32] unit increase	NR [11722792] (imputed)	N
1813	chr6	161015984	161015985	rs142231215	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for VLDL particles	115,082 European ancestry individuals	NA	6q25.3		rs142231215-G	0.99519	1E-20		0.270177	[0.21-0.33] unit increase	NR [11722792] (imputed)	N
1813	chr6	161016426	161016427	rs142720914	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs142720914-A	NR	2E-56		1.0379	[0.91-1.17] unit increase	Affymetrix [9000000] (imputed)	N
1813	chr6	161017362	161017363	rs73596816	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium VLDL	115,082 European ancestry individuals	NA	6q25.3		rs73596816-G	0.966407	3E-13		0.0811256	[0.059-0.103] unit increase	NR [11722792] (imputed)	N
1813	chr6	161017362	161017363	rs73596816	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large VLDL	115,082 European ancestry individuals	NA	6q25.3		rs73596816-G	0.966407	2E-17		0.0938829	[0.072-0.116] unit increase	NR [11722792] (imputed)	N
1813	chr6	161017362	161017363	rs73596816	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in VLDL	115,082 European ancestry individuals	NA	6q25.3		rs73596816-G	0.966407	1E-14		0.0867999	[0.065-0.109] unit increase	NR [11722792] (imputed)	N
1813	chr6	161017362	161017363	rs73596816	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total fatty acid levels	115,006 European ancestry individuals	NA	6q25.3		rs73596816-G	0.966415	3E-8		0.0629857	[0.041-0.085] unit increase	NR [11722792] (imputed)	N
1813	chr6	161017362	161017363	rs73596816	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Saturated fatty acid levels	115,006 European ancestry individuals	NA	6q25.3		rs73596816-G	0.966415	5E-9		0.0660543	[0.044-0.088] unit increase	NR [11722792] (imputed)	N
1813	chr6	161017362	161017363	rs73596816	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large VLDL	115,082 European ancestry individuals	NA	6q25.3		rs73596816-G	0.966407	3E-15		0.0874503	[0.066-0.109] unit increase	NR [11722792] (imputed)	N
1813	chr6	161017362	161017363	rs73596816	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Monounsaturated fatty acid levels	115,006 European ancestry individuals	NA	6q25.3		rs73596816-G	0.966415	1E-10		0.0727658	[0.051-0.095] unit increase	NR [11722792] (imputed)	N
1813	chr6	161017362	161017363	rs73596816	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	6q25.3		rs73596816-G	0.966407	5E-14		0.0835401	[0.062-0.105] unit increase	NR [11722792] (imputed)	N
1813	chr6	161017362	161017363	rs73596816	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in VLDL	115,082 European ancestry individuals	NA	6q25.3		rs73596816-G	0.966407	3E-9		0.0674295	[0.045-0.09] unit increase	NR [11722792] (imputed)	N
1813	chr6	161017362	161017363	rs73596816	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large VLDL particles	115,082 European ancestry individuals	NA	6q25.3		rs73596816-G	0.966407	2E-16		0.0907738	[0.069-0.112] unit increase	NR [11722792] (imputed)	N
1813	chr6	161017362	161017363	rs73596816	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Unstable angina pectoris	5,891 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	6q25.3		rs73596816-A	0.040508178	5E-8		0.29078114	[0.19-0.4] unit increase	Illumina [13425416] (imputed)	N
1813	chr6	161017362	161017363	rs73596816	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	6q25.3	NR	rs73596816-A	NR	6E-13		0.0468	[0.034-0.06] unit increase	Affymetrix [9000000] (imputed)	N
1813	chr6	161017362	161017363	rs73596816	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	6q25.3	NR	rs73596816-A	NR	1E-16		0.0539	[0.041-0.067] unit increase	Affymetrix [9000000] (imputed)	N
1813	chr6	161017362	161017363	rs73596816	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs73596816-A	NR	2E-2500		0.7478	[0.73-0.76] unit increase	Affymetrix [9000000] (imputed)	N
1813	chr6	161017362	161017363	rs73596816	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	6q25.3	NR	rs73596816-A	NR	3E-15		0.0515	[0.039-0.064] unit increase	Affymetrix [9000000] (imputed)	N
1813	chr6	161017362	161017363	rs73596816	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 142,336 Japanese ancestry controls	NA	6q25.3	LPA	rs73596816-?	NR	1E-12		0.169217	[0.12-0.22] unit increase	Illumina [19707525] (imputed)	N
1813	chr6	161017362	161017363	rs73596816	31186284	Liu Y	2019-06-11	J Lipid Res	A genome wide association study on lipoprotein(a) levels and coronary artery disease severity in a Chinese population.	Lipoprotein (a) levels in coronary artery disease (percutaneous coronary intervention)	1,402 Han Chinese ancestry individuals	NA	6q25.3	LPA	rs73596816-A	NR	1E-22		0.86	[0.68-1.04] unit increase	Illumina [3448668] (imputed)	N
1813	chr6	161017362	161017363	rs73596816	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	6q25.3	LPA	rs73596816-A	0.033	3E-10		0.118	[0.081-0.155] unit increase	Affymetrix [7947838] (imputed)	N
1813	chr6	161017362	161017363	rs73596816	28512139	Mack S	2017-05-16	J Lipid Res	A genome-wide association meta-analysis on lipoprotein (a) concentrations adjusted for apolipoprotein (a) isoforms.	Lipoprotein (a) levels	13,781 European ancestry individuals	NA	6q25.3	LPA	rs73596816-A		2E-18		11.2	[7.94-14.46] mg/dL increase	Affymetrix, Illumina [at least 7600000] (imputed)	N
1813	chr6	161018173	161018174	rs7770628	31186284	Liu Y	2019-06-11	J Lipid Res	A genome wide association study on lipoprotein(a) levels and coronary artery disease severity in a Chinese population.	Lipoprotein (a) levels in coronary artery disease (percutaneous coronary intervention)	1,402 Han Chinese ancestry individuals	NA	6q25.3	LPA	rs7770628-C	NR	2E-30		0.73	[0.61-0.85] unit increase	Illumina [3448668] (imputed)	N
1813	chr6	161018173	161018174	rs7770628	28512139	Mack S	2017-05-16	J Lipid Res	A genome-wide association meta-analysis on lipoprotein (a) concentrations adjusted for apolipoprotein (a) isoforms.	Lipoprotein (a) levels	13,781 European ancestry individuals	NA	6q25.3	LPA	rs7770628-C		5E-45		4.73	[4.18-5.28] mg/dL increase	Affymetrix, Illumina [at least 7600000] (imputed)	N
1813	chr6	161018173	161018174	rs7770628	18464913	Melzer D	2008-05-09	PLoS Genet	A genome-wide association study identifies protein quantitative trait loci (pQTLs).	Protein quantitative trait loci	1,200 European ancestry individuals	up to 4,590 European ancestry individuals	6q25.3	LPA	rs7770628-?	0.49	4E-10	(LPA)			Illumina [496032]	N
1813	chr6	161018984	161018985	rs75234242	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs75234242-A	NR	2E-40		0.0994	[0.085-0.114] unit decrease	Affymetrix [9000000] (imputed)	N
1813	chr6	161018984	161018985	rs75234242	28512139	Mack S	2017-05-16	J Lipid Res	A genome-wide association meta-analysis on lipoprotein (a) concentrations adjusted for apolipoprotein (a) isoforms.	Lipoprotein(a) levels adjusted for apolipoprotein(a) isoforms	13,781 European ancestry individuals	NA	6q25.3	LPA	rs75234242-A		4E-97		13.59	[12.18-15] unit decrease	Affymetrix, Illumina [at least 7600000] (imputed)	N
1813	chr6	161019865	161019866	rs6926458	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	6q25.3	NR	rs6926458-G	NR	5E-28		0.0329	[0.027-0.039] unit decrease	Affymetrix [9000000] (imputed)	N
1813	chr6	161019865	161019866	rs6926458	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	6q25.3	NR	rs6926458-G	NR	2E-33		0.0362	[0.03-0.042] unit decrease	Affymetrix [9000000] (imputed)	N
1813	chr6	161019865	161019866	rs6926458	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q25.3	NR	rs6926458-G	NR	2E-947		0.2198	[0.21-0.23] unit decrease	Affymetrix [9000000] (imputed)	N
1813	chr6	161019865	161019866	rs6926458	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	6q25.3	NR	rs6926458-G	NR	2E-29		0.0339	[0.028-0.04] unit decrease	Affymetrix [9000000] (imputed)	N
1813	chr6	161019865	161019866	rs6926458	31186284	Liu Y	2019-06-11	J Lipid Res	A genome wide association study on lipoprotein(a) levels and coronary artery disease severity in a Chinese population.	Lipoprotein (a) levels in coronary artery disease (percutaneous coronary intervention)	1,402 Han Chinese ancestry individuals	NA	6q25.3	LPA	rs6926458-G	NR	5E-16		0.34	[0.26-0.42] unit decrease	Illumina [3448668] (imputed)	N
1813	chr6	161022106	161022107	rs41259144	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Lipoprotein (a) levels	348,806 European ancestry individuals	NA	6q26		rs41259144-?	NR	2E-143		0.252391	[0.23-0.27] unit decrease	NR [9800000] (imputed)	N
1813	chr6	161022106	161022107	rs41259144	28512139	Mack S	2017-05-16	J Lipid Res	A genome-wide association meta-analysis on lipoprotein (a) concentrations adjusted for apolipoprotein (a) isoforms.	Lipoprotein (a) levels	13,781 European ancestry individuals	NA	6q26	LPA	rs41259144-T		4E-24		14.27	[10.48-18.06] mg/dL decrease	Affymetrix, Illumina [at least 7600000] (imputed)	N
1813	chr6	161022296	161022297	rs191344155	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	6q26		rs191344155-A	0.995994	3E-8		0.188611	[0.12-0.26] unit increase	NR [11722792] (imputed)	N
1813	chr6	161029669	161029670	rs116850263	28512139	Mack S	2017-05-16	J Lipid Res	A genome-wide association meta-analysis on lipoprotein (a) concentrations adjusted for apolipoprotein (a) isoforms.	Lipoprotein (a) levels	13,781 European ancestry individuals	NA	6q26	LPA	rs116850263-C		1E-16		4.89	[2.6-7.18] mg/dL increase	Affymetrix, Illumina [at least 7600000] (imputed)	N
1813	chr6	161030230	161030231	rs75692336	28512139	Mack S	2017-05-16	J Lipid Res	A genome-wide association meta-analysis on lipoprotein (a) concentrations adjusted for apolipoprotein (a) isoforms.	Lipoprotein(a) levels adjusted for apolipoprotein(a) isoforms	13,781 European ancestry individuals	NA	6q26	LPA	rs75692336-A		3E-216		9.67	[8.97-10.37] unit decrease	Affymetrix, Illumina [at least 7600000] (imputed)	N
1813	chr6	161030460	161030461	rs141033257	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Peripheral artery disease	3,593 Japanese ancestry cases, 208,860 Japanese ancestry controls	NA	6q26		rs141033257-A	0.011355815	3E-8		2.117425	[1.623359979-2.761857247]	Illumina [8919992] (imputed)	N
1813	chr6	161031252	161031253	rs9355814	26377243	Li J	2015-09-17	J Hum Genet	Genome- and exome-wide association study of serum lipoprotein (a) in the Jackson Heart Study.	Lipoprotein (a) levels	2,895 African American individuals	NA	6q26	LPA	rs9355814-T	0.15	5E-25		0.33	[0.27-0.39] unit decrease	Affymetrix [up to 38000000] (imputed)	N
1813	chr6	161031659	161031660	rs115848955	26377243	Li J	2015-09-17	J Hum Genet	Genome- and exome-wide association study of serum lipoprotein (a) in the Jackson Heart Study.	Lipoprotein (a) levels	2,895 African American individuals	NA	6q26	LPA	rs115848955-T	0.05	1E-62		0.79	[0.69-0.89] unit increase	Affymetrix [up to 38000000] (imputed)	N
1813	chr6	161055670	161055671	rs7765684	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	C-reactive protein levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	6q26	LPA	rs7765684-?		9E-12		0.1395	[0.1-0.179] unit decrease	Illumina [31500000] (imputed)	N
1813	chr6	161062117	161062118	rs569944069	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	6q26		rs569944069-G	0.983759	2E-8		0.0949179	[0.062-0.128] unit decrease	NR [11722792] (imputed)	N
1813	chr6	161062117	161062118	rs569944069	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6q26		rs569944069-G	0.98388	2E-9		0.0964868	[0.065-0.128] unit decrease	NR [11722792] (imputed)	N
1813	chr6	161062117	161062118	rs569944069	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6q26		rs569944069-G	0.98388	2E-8		0.0899646	[0.058-0.122] unit decrease	NR [11722792] (imputed)	N
1813	chr6	161062117	161062118	rs569944069	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	6q26		rs569944069-G	0.983759	1E-8		0.0950401	[0.062-0.128] unit increase	NR [11722792] (imputed)	N
1813	chr6	161062117	161062118	rs569944069	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	6q26		rs569944069-G	0.983759	4E-9		0.0984888	[0.066-0.131] unit increase	NR [11722792] (imputed)	N
1813	chr6	161062551	161062552	rs9347434	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	6q26	LPA	rs9347434-G	0.230161	4E-9		0.015816439	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1813	chr6	161067928	161067929	rs185934663	28512139	Mack S	2017-05-16	J Lipid Res	A genome-wide association meta-analysis on lipoprotein (a) concentrations adjusted for apolipoprotein (a) isoforms.	Lipoprotein (a) levels	13,781 European ancestry individuals	NA	6q26	LPA	rs185934663-G		5E-18		6.93	[3.58-10.28] mg/dL decrease	Affymetrix, Illumina [at least 7600000] (imputed)	N
1813	chr6	161068234	161068235	rs117026595	28512139	Mack S	2017-05-16	J Lipid Res	A genome-wide association meta-analysis on lipoprotein (a) concentrations adjusted for apolipoprotein (a) isoforms.	Lipoprotein(a) levels adjusted for apolipoprotein(a) isoforms	13,781 European ancestry individuals	NA	6q26	LPA	rs117026595-T		3E-28		13.81	[10.97-16.65] unit decrease	Affymetrix, Illumina [at least 7600000] (imputed)	N
1813	chr6	161070586	161070587	rs539755613	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antithrombotic agents)	54,220 East Asian ancestry cases, 124,506 East Asian ancestry controls	NA	6q26		rs539755613-T	0.003059223	3E-9		0.4511007	[0.3-0.6] unit increase	Illumina [13429980] (imputed)	N
1813	chr6	161070989	161070990	rs7759633	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6q26	NR	rs7759633-G	NR	5E-6		0.024	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1813	chr6	161070989	161070990	rs7759633	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	Triglycerides	up to 62,166 European ancestry individuals	NA	6q26	LPA	rs7759633-G	0.87	9E-9		0.051	[0.033-0.069] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
1813	chr6	161071981	161071982	rs12212507	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small HDL	115,082 European ancestry individuals	NA	6q26		rs12212507-G	0.940217	2E-15		0.0684992	[0.052-0.085] unit decrease	NR [11722792] (imputed)	N
1813	chr6	161073048	161073048	rs112939444	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	6q26		rs112939444-CA	NR	8E-20		0.0231	[0.018-0.028] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
1813	chr6	161074982	161074983	rs188974863	28512139	Mack S	2017-05-16	J Lipid Res	A genome-wide association meta-analysis on lipoprotein (a) concentrations adjusted for apolipoprotein (a) isoforms.	Lipoprotein(a) levels adjusted for apolipoprotein(a) isoforms	13,781 European ancestry individuals	NA	6q26	LPA	rs188974863-A		2E-107		9.13	[8.24-10.02] unit decrease	Affymetrix, Illumina [at least 7600000] (imputed)	N
1813	chr6	161078183	161078184	rs117162385	28512139	Mack S	2017-05-16	J Lipid Res	A genome-wide association meta-analysis on lipoprotein (a) concentrations adjusted for apolipoprotein (a) isoforms.	Lipoprotein (a) levels	13,781 European ancestry individuals	NA	6q26	LPA	rs117162385-A		3E-6		2.78	[-0.20312-5.76312] mg/dL increase	Affymetrix, Illumina [at least 7600000] (imputed)	N
1813	chr6	161085266	161085267	rs1800769	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total esterified cholesterol levels	115,082 European ancestry individuals	NA	6q26		rs1800769-C	0.830827	8E-9		0.0310652	[0.021-0.042] unit increase	NR [11722792] (imputed)	N
1813	chr6	161086616	161086621	rs72314471	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6q26	NR	rs72314471-C	0.8389	8E-6	(EA)	0.0385	[0.022-0.055] unit decrease	Illumina [~ 11800000] (imputed)	N
1813	chr6	161086715	161086716	rs76735376	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	VLDL cholesterol levels	115,082 European ancestry individuals	NA	6q26		rs76735376-G	0.988257	2E-8		0.113342	[0.074-0.153] unit increase	NR [11722792] (imputed)	N
1813	chr6	161086715	161086716	rs76735376	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small VLDL	115,082 European ancestry individuals	NA	6q26		rs76735376-G	0.988257	2E-15		0.154799	[0.12-0.19] unit increase	NR [11722792] (imputed)	N
1813	chr6	161086715	161086716	rs76735376	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small HDL	115,082 European ancestry individuals	NA	6q26		rs76735376-G	0.988257	5E-10		0.121268	[0.083-0.16] unit increase	NR [11722792] (imputed)	N
1813	chr6	161086715	161086716	rs76735376	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium VLDL	115,082 European ancestry individuals	NA	6q26		rs76735376-G	0.988257	7E-20		0.179032	[0.14-0.22] unit increase	NR [11722792] (imputed)	N
1813	chr6	161086715	161086716	rs76735376	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium LDL	115,082 European ancestry individuals	NA	6q26		rs76735376-G	0.988257	2E-10		0.12574	[0.087-0.164] unit increase	NR [11722792] (imputed)	N
1813	chr6	161086715	161086716	rs76735376	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small VLDL	115,082 European ancestry individuals	NA	6q26		rs76735376-G	0.988257	4E-8		0.110065	[0.071-0.149] unit increase	NR [11722792] (imputed)	N
1813	chr6	161086715	161086716	rs76735376	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium VLDL	115,082 European ancestry individuals	NA	6q26		rs76735376-G	0.988257	3E-11		0.13382	[0.094-0.173] unit increase	NR [11722792] (imputed)	N
1813	chr6	161086715	161086716	rs76735376	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large VLDL	115,082 European ancestry individuals	NA	6q26		rs76735376-G	0.988257	1E-23		0.195873	[0.16-0.23] unit increase	NR [11722792] (imputed)	N
1813	chr6	161086715	161086716	rs76735376	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in VLDL	115,082 European ancestry individuals	NA	6q26		rs76735376-G	0.988257	1E-21		0.189291	[0.15-0.23] unit increase	NR [11722792] (imputed)	N
1813	chr6	161086715	161086716	rs76735376	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total fatty acid levels	115,006 European ancestry individuals	NA	6q26		rs76735376-G	0.988249	2E-16		0.164392	[0.13-0.2] unit increase	NR [11722792] (imputed)	N
1813	chr6	161086715	161086716	rs76735376	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Saturated fatty acid levels	115,006 European ancestry individuals	NA	6q26		rs76735376-G	0.988249	2E-16		0.164445	[0.13-0.2] unit increase	NR [11722792] (imputed)	N
1813	chr6	161086715	161086716	rs76735376	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Polyunsaturated fatty acid levels	115,006 European ancestry individuals	NA	6q26		rs76735376-G	0.988249	6E-9		0.11422	[0.076-0.153] unit increase	NR [11722792] (imputed)	N
1813	chr6	161086715	161086716	rs76735376	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large VLDL	115,082 European ancestry individuals	NA	6q26		rs76735376-G	0.988257	7E-21		0.182846	[0.14-0.22] unit increase	NR [11722792] (imputed)	N
1813	chr6	161086715	161086716	rs76735376	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in VLDL	115,082 European ancestry individuals	NA	6q26		rs76735376-G	0.988257	1E-15		0.160022	[0.12-0.2] unit increase	NR [11722792] (imputed)	N
1813	chr6	161086715	161086716	rs76735376	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-6 fatty acid levels	115,006 European ancestry individuals	NA	6q26		rs76735376-G	0.988249	4E-8		0.108288	[0.07-0.147] unit increase	NR [11722792] (imputed)	N
1813	chr6	161086715	161086716	rs76735376	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Monounsaturated fatty acid levels	115,006 European ancestry individuals	NA	6q26		rs76735376-G	0.988249	6E-19		0.177413	[0.14-0.22] unit increase	NR [11722792] (imputed)	N
1813	chr6	161086715	161086716	rs76735376	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Linoleic acid levels	115,006 European ancestry individuals	NA	6q26		rs76735376-G	0.988249	9E-10		0.121757	[0.083-0.161] unit increase	NR [11722792] (imputed)	N
1813	chr6	161086715	161086716	rs76735376	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	6q26		rs76735376-G	0.988257	1E-19		0.177247	[0.14-0.22] unit increase	NR [11722792] (imputed)	N
1813	chr6	161086715	161086716	rs76735376	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in VLDL	115,082 European ancestry individuals	NA	6q26		rs76735376-G	0.988257	1E-13		0.148679	[0.11-0.19] unit increase	NR [11722792] (imputed)	N
1813	chr6	161086715	161086716	rs76735376	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small VLDL particles	115,082 European ancestry individuals	NA	6q26		rs76735376-G	0.988257	2E-8		0.111933	[0.073-0.151] unit increase	NR [11722792] (imputed)	N
1813	chr6	161086715	161086716	rs76735376	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium VLDL particles	115,082 European ancestry individuals	NA	6q26		rs76735376-G	0.988257	6E-9		0.117277	[0.078-0.157] unit increase	NR [11722792] (imputed)	N
1813	chr6	161086715	161086716	rs76735376	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large VLDL particles	115,082 European ancestry individuals	NA	6q26		rs76735376-G	0.988257	3E-23		0.193776	[0.16-0.23] unit increase	NR [11722792] (imputed)	N
1813	chr6	161086715	161086716	rs76735376	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of VLDL particles	115,082 European ancestry individuals	NA	6q26		rs76735376-G	0.988257	2E-8		0.113619	[0.074-0.153] unit increase	NR [11722792] (imputed)	N
1813	chr6	161086715	161086716	rs76735376	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large VLDL	115,082 European ancestry individuals	NA	6q26		rs76735376-G	0.988257	7E-15		0.155022	[0.12-0.19] unit increase	NR [11722792] (imputed)	N
1813	chr6	161086715	161086716	rs76735376	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large VLDL	115,082 European ancestry individuals	NA	6q26		rs76735376-G	0.988257	1E-10		0.1287	[0.09-0.168] unit increase	NR [11722792] (imputed)	N
1813	chr6	161086715	161086716	rs76735376	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	6q26		rs76735376-G	0.988257	1E-20		0.184042	[0.15-0.22] unit increase	NR [11722792] (imputed)	N
1813	chr6	161086715	161086716	rs76735376	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	6q26		rs76735376-G	0.988257	5E-15		0.154772	[0.12-0.19] unit increase	NR [11722792] (imputed)	N
1814	chr6	161087862	161087863	rs41269133	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	6q26	LPA	rs41269133-T	0.9118	2E-8		0.0637	[0.041-0.086] unit increase	NR [8041861] (imputed)	N
1814	chr6	161087862	161087863	rs41269133	28512139	Mack S	2017-05-16	J Lipid Res	A genome-wide association meta-analysis on lipoprotein (a) concentrations adjusted for apolipoprotein (a) isoforms.	Lipoprotein (a) levels	13,781 European ancestry individuals	NA	6q26	LPA	rs41269133-C		5E-55		5.72	[4.82-6.62] mg/dL decrease	Affymetrix, Illumina [at least 7600000] (imputed)	N
1814	chr6	161089306	161089307	rs56393506	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	6q26		rs56393506-C	0.828806	1E-78		0.104415	[0.094-0.115] unit decrease	NR [11722792] (imputed)	N
1814	chr6	161089306	161089307	rs56393506	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	6q26		rs56393506-C	0.830282	7E-92		0.114199	[0.1-0.13] unit decrease	NR [11722792] (imputed)	N
1814	chr6	161089306	161089307	rs56393506	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	6q26		rs56393506-C	0.828806	9E-100		0.117849	[0.11-0.13] unit increase	NR [11722792] (imputed)	N
1814	chr6	161089306	161089307	rs56393506	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for LDL particles	115,082 European ancestry individuals	NA	6q26		rs56393506-C	0.828806	2E-65		0.093157	[0.082-0.104] unit decrease	NR [11722792] (imputed)	N
1814	chr6	161089306	161089307	rs56393506	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Unstable angina pectoris	9,481 European ancestry cases, 446,987 European ancestry controls, 5,891 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	6q26		rs56393506-T	NR	2E-29		0.2	[0.17-0.23] unit increase	Affymetrix, Illumina [25840389] (imputed)	N
1814	chr6	161089306	161089307	rs56393506	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	6q26	LPA, PLG	rs56393506-?	NR	3E-103		0.14927	[0.14-0.16] unit increase	Illumina [4804024] (imputed)	N
1814	chr6	161089306	161089307	rs56393506	32469254	Matsunaga H	2020-05-29	Circ Genom Precis Med	Transethnic Meta-analysis of Genome-wide Association Studies Identifies Three New Loci and Characterizes Population-specific Differences for Coronary Artery Disease.	Coronary artery disease	15,302 Japanese ancestry cases, 76,014 European and East Asian ancestry cases, 36,140 Japanese ancestry controls, 264,785 European and East Asian ancestry controls	NA	6q26	LPA	rs56393506-T	0.16	5E-34		1.15	[1.13-1.17]	Illumina [5167567] (imputed)	N
1814	chr6	161089306	161089307	rs56393506	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x long total sleep time interaction (2df test)	2,913 African American long sleepers, 358 Chinese ancestry long sleepers, 110 Asian ancestry long sleepers, 7,583 European ancestry long sleepers, 1,036 Hispanic/Latino long sleepers, up to 11,862 African American controls, 1,432 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,744 European ancestry controls, 4,066 Hispanic/Latino controls	at least 214 African American long sleepers, 616 East Asian ancestry long sleepers, up to 6,657 European ancestry long sleepers, 2,457 Hispanic long sleepers, at least 913 African American controls, 2,517 East Asian ancestry controls, up to 26,868 European ancestry controls, 9,870 Hispanic controls	6q26	SLC22A1	rs56393506-?	NR	3E-17		2.382	[1.84-2.92] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1814	chr6	161089306	161089307	rs56393506	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Ischemic stroke (large artery atherosclerosis)	4,373 European ancestry cases, 406,111 European ancestry controls, 1,626 East Asian ancestry cases, 28,195 East Asian ancestry controls, 355 South Asian ancestry cases, 6,707 South Asian ancestry controls, 259 African American cases, 15,146 African American controls, 34 Asian ancestry cases, 333 Asian ancestry controls, 41 Latin American cases, 692 Latin American controls	NA	6q26	LPA	rs56393506-T	0.16	1E-7		1.17	[1.10-1.24]	NR [~ 8000000] (imputed)	N
1814	chr6	161089306	161089307	rs56393506	28512139	Mack S	2017-05-16	J Lipid Res	A genome-wide association meta-analysis on lipoprotein (a) concentrations adjusted for apolipoprotein (a) isoforms.	Lipoprotein(a) levels adjusted for apolipoprotein(a) isoforms	13,781 European ancestry individuals	NA	6q26	LPA	rs56393506-T		3E-105		7.07	[6.37-7.77] unit increase	Affymetrix, Illumina [at least 7600000] (imputed)	N
1814	chr6	161089306	161089307	rs56393506	28512139	Mack S	2017-05-16	J Lipid Res	A genome-wide association meta-analysis on lipoprotein (a) concentrations adjusted for apolipoprotein (a) isoforms.	Lipoprotein (a) levels	13,781 European ancestry individuals	NA	6q26	LPA	rs56393506-T		8E-285		13.6	[12.78-14.42] mg/dL increase	Affymetrix, Illumina [at least 7600000] (imputed)	N
1814	chr6	161089816	161089817	rs1084651	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	6q26	NR	rs1084651-?	NR	6E-6		1.676602	[0.95-2.4] unit decrease	Illumina [32003504] (imputed)	N
1814	chr6	161089816	161089817	rs1084651	25208887	Ma Q	2014-09-10	Blood	Genetic variants in PLG, LPA, and SIGLEC 14 as well as smoking contribute to plasma plasminogen levels.	Plasma plasminogen levels	up to 3,244 European ancestry individuals	NA	6q26	LPA, SLC22A3	rs1084651-A	0.19	2E-15		0.038	[0.028-0.048] unit decrease	Illumina [up to 4514079] (imputed)	N
1814	chr6	161089816	161089817	rs1084651	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	HDL cholesterol	99,900 European ancestry individuals	NA	6q26	LPA	rs1084651-A	0.16	3E-8		0.56	[0.36-0.76] mg/dL decrease	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1814	chr6	161092437	161092438	rs11751347	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	6q26		rs11751347-C	0.897743	2E-18		0.0526888	[0.041-0.064] unit increase	NR [11722792] (imputed)	N
1814	chr6	161092437	161092438	rs11751347	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in HDL	115,082 European ancestry individuals	NA	6q26		rs11751347-C	0.897743	7E-10		0.0378904	[0.026-0.05] unit increase	NR [11722792] (imputed)	N
1814	chr6	161092437	161092438	rs11751347	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Sphingomyelin levels	115,006 European ancestry individuals	NA	6q26		rs11751347-C	0.897714	4E-11		0.0423428	[0.03-0.055] unit increase	NR [11722792] (imputed)	N
1814	chr6	161092437	161092438	rs11751347	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6q26		rs11751347-C	0.897743	3E-9		0.0397146	[0.027-0.053] unit decrease	NR [11722792] (imputed)	N
1814	chr6	161092437	161092438	rs11751347	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large HDL	115,082 European ancestry individuals	NA	6q26		rs11751347-C	0.897743	2E-16		0.0495133	[0.038-0.061] unit increase	NR [11722792] (imputed)	N
1814	chr6	161092437	161092438	rs11751347	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	HDL cholesterol levels	115,082 European ancestry individuals	NA	6q26		rs11751347-C	0.897743	2E-19		0.0551837	[0.043-0.067] unit increase	NR [11722792] (imputed)	N
1814	chr6	161092437	161092438	rs11751347	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	6q26		rs11751347-C	0.89775	3E-11		0.0404993	[0.029-0.052] unit decrease	NR [11722792] (imputed)	N
1814	chr6	161092437	161092438	rs11751347	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	6q26		rs11751347-C	0.897743	8E-24		0.061132	[0.049-0.073] unit increase	NR [11722792] (imputed)	N
1814	chr6	161092437	161092438	rs11751347	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	6q26		rs11751347-C	0.897743	1E-14		0.0492121	[0.037-0.062] unit increase	NR [11722792] (imputed)	N
1814	chr6	161092437	161092438	rs11751347	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	6q26		rs11751347-C	0.897743	4E-9		0.0366523	[0.024-0.049] unit increase	NR [11722792] (imputed)	N
1814	chr6	161092437	161092438	rs11751347	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	6q26		rs11751347-C	0.897743	1E-19		0.0544669	[0.043-0.066] unit increase	NR [11722792] (imputed)	N
1814	chr6	161092437	161092438	rs11751347	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in HDL	115,082 European ancestry individuals	NA	6q26		rs11751347-C	0.897743	3E-14		0.0460396	[0.034-0.058] unit increase	NR [11722792] (imputed)	N
1814	chr6	161092437	161092438	rs11751347	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium HDL	115,082 European ancestry individuals	NA	6q26		rs11751347-C	0.897743	1E-11		0.0430201	[0.031-0.055] unit increase	NR [11722792] (imputed)	N
1814	chr6	161092437	161092438	rs11751347	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	6q26		rs11751347-C	0.897743	2E-14		0.0526224	[0.039-0.066] unit increase	NR [11722792] (imputed)	N
1814	chr6	161092437	161092438	rs11751347	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	6q26		rs11751347-C	0.897743	1E-20		0.0619145	[0.049-0.075] unit increase	NR [11722792] (imputed)	N
1814	chr6	161092437	161092438	rs11751347	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	6q26		rs11751347-C	0.897743	3E-11		0.0419328	[0.03-0.054] unit increase	NR [11722792] (imputed)	N
1814	chr6	161092437	161092438	rs11751347	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PLG	5,360 Icelandic ancestry individuals	NA	6q26		rs11751347-T	0.07938	2E-24		0.348775	[0.28-0.42] unit decrease	Illumina [7506463] (imputed)	N
1814	chr6	161092437	161092438	rs11751347	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PLG	5,357 Icelandic ancestry individuals	NA	6q26		rs11751347-T	0.07938	6E-60		0.534517	[0.47-0.6] unit decrease	Illumina [7506463] (imputed)	N
1814	chr6	161092437	161092438	rs11751347	31589552	Lind L	2019-10-07	Metab Syndr Relat Disord	Genome-Wide Association Study of the Metabolic Syndrome in UK Biobank.	Metabolic syndrome	291,107 European ancestry individuals	NA	6q26	LPA	rs11751347-T	0.102714	5E-9		0.0624875	[0.042-0.083] unit increase	Affymetrix [9463307] (imputed)	N
1814	chr6	161092437	161092438	rs11751347	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	6q26	RP1-81D8.4	rs11751347-T	0.0857	2E-32		0.0636	[0.053-0.074] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1814	chr6	161092437	161092438	rs11751347	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6q26	NR	rs11751347-T	0.101	5E-23	(Angiostatin, PLG.3710.49.2)	0.4	[0.32-0.48] unit decrease	Affymetrix [10572788] (imputed)	N
1814	chr6	161094268	161094269	rs79741405	29885931	Langefeld CD	2018-06-06	Kidney Int	Genome-wide association studies suggest that APOL1-environment interactions more likely trigger kidney disease in African Americans with nondiabetic nephropathy than strong APOL1-second gene interactions.	End stage renal disease x APOL1 genotype interaction	1,749 African American ESRD cases, 901 African American lupus nephritis-ESRD cases	NA	6q26	LPA, PLG	rs79741405-?		8E-8		2.97	[2.01-4.39]	Illumina [NR]	N
1814	chr6	161097277	161097278	rs12523781	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs non-severe)	86 Finnish ancestry male severe erosion cases, 50 Finnish ancestry female severe erosion cases, 817 Finnish ancestry male non-severe erosion controls, 991 Finnish ancestry female non-severe erosion controls	NA	6q26	NR	rs12523781-?	NR	8E-6				Illumina [NR] (imputed)	N
1814	chr6	161099502	161099503	rs5014650	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	6q26	LPA, PLG	rs5014650-A	NR	5E-7	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1814	chr6	161099502	161099503	rs5014650	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	6q26	LPA, PLG	rs5014650-A	NR	5E-8	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1814	chr6	161099502	161099503	rs5014650	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	6q26	LPA, PLG	rs5014650-A	NR	5E-6				Affymetrix, Illumina [NR] (imputed)	N
1814	chr6	161099502	161099503	rs5014650	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	6q26	LPA, PLG	rs5014650-A	NR	4E-8	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1814	chr6	161099502	161099503	rs5014650	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	6q26	LPA, PLG	rs5014650-A	NR	4E-11				Affymetrix, Illumina [NR] (imputed)	N
1814	chr6	161099502	161099503	rs5014650	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	6q26	LPA, PLG	rs5014650-A	NR	3E-175	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1814	chr6	161099502	161099503	rs5014650	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	6q26	LPA, PLG	rs5014650-A	NR	2E-178				Affymetrix, Illumina [NR] (imputed)	N
1814	chr6	161099502	161099503	rs5014650	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	6q26	LPA, PLG	rs5014650-A	NR	8E-6	(EA)	1.019	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1814	chr6	161099502	161099503	rs5014650	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	6q26	LPA, PLG	rs5014650-A	NR	6E-8		1.095	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1814	chr6	161099502	161099503	rs5014650	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	6q26	LPA, PLG	rs5014650-A	NR	4E-8	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1814	chr6	161099502	161099503	rs5014650	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	6q26	LPA, PLG	rs5014650-A	NR	3E-8				Affymetrix, Illumina [NR] (imputed)	N
1814	chr6	161099502	161099503	rs5014650	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	6q26	LPA, PLG	rs5014650-A	NR	1E-9	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1814	chr6	161099502	161099503	rs5014650	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	6q26	LPA, PLG	rs5014650-A	NR	1E-9				Affymetrix, Illumina [NR] (imputed)	N
1814	chr6	161101922	161101923	rs191388787	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium VLDL	115,082 European ancestry individuals	NA	6q26		rs191388787-T	0.989139	3E-8		0.116069	[0.075-0.157] unit increase	NR [11722792] (imputed)	N
1814	chr6	161103804	161103805	rs374071816	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in IDL	115,082 European ancestry individuals	NA	6q26		rs374071816-T	0.907751	8E-12		0.0497733	[0.036-0.064] unit decrease	NR [11722792] (imputed)	N
1814	chr6	161103804	161103805	rs374071816	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in IDL	115,082 European ancestry individuals	NA	6q26		rs374071816-T	0.907751	2E-11		0.0489089	[0.035-0.063] unit decrease	NR [11722792] (imputed)	N
1814	chr6	161105259	161105260	rs10806735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of linoleic acid to total fatty acids	115,006 European ancestry individuals	NA	6q26		rs10806735-G	0.304236	6E-16		0.0352673	[0.027-0.044] unit decrease	NR [11722792] (imputed)	N
1814	chr6	161108143	161108144	rs2315065	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental longevity (combined parental age at death)	45,627 middle-aged British individuals	NA	6q26	NR	rs2315065-?	NR	7E-6		0.056891	[0.032-0.082] unit increase	Affymetrix [9658292] (imputed)	N
1814	chr6	161108143	161108144	rs2315065	26343387	Nikpay M	2015-09-07	Nat Genet	A comprehensive 1,000 Genomes-based genome-wide association meta-analysis of coronary artery disease.	Myocardial infarction	27,509 European ancestry cases, 130 African American cases, 278 Hispanic American cases, 10,257 South Asian ancestry cases, 288 Lebanese ancestry cases, 1,687 East Asian ancestry cases, 99,121 European ancestry controls, 2,778 African American controls, 3,337 Hispanic American controls, 12,899 South Asian ancestry controls, 466 Lebanese ancestry controls, 7,709 East Asian ancestry controls	NA	6q26	PLG	rs2315065-A	0.06	2E-24		1.3	[1.24-1.36]	Affymetrix, Illumina [8600000] (imputed)	N
1814	chr6	161108292	161108293	rs181711349	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	72,866 East Asian ancestry individuals	NA	6q26		rs181711349-A	0.005504	7E-16		0.30333	[0.23-0.38] unit increase	Illumina [13461863] (imputed)	N
1814	chr6	161108535	161108536	rs6935921	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small LDL	115,082 European ancestry individuals	NA	6q26		rs6935921-C	0.299877	6E-11		0.0295663	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
1814	chr6	161108535	161108536	rs6935921	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large LDL	115,082 European ancestry individuals	NA	6q26		rs6935921-C	0.299877	5E-11		0.0291694	[0.02-0.038] unit decrease	NR [11722792] (imputed)	N
1814	chr6	161108535	161108536	rs6935921	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (father's age at death or father's attained age)	up to 699,000 European ancestry individuals	NA	6q26	NR	rs6935921-A	NR	2E-7				Illumina [458865]	N
1814	chr6	161111699	161111700	rs186696265	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	6q26		rs186696265-T	NR	2E-26		0.1023	[0.083-0.121] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
1814	chr6	161111699	161111700	rs186696265	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	6q26	PLG	rs186696265-C	0.985306	5E-36		0.104035	[0.088-0.12] unit increase	Affymetrix [NR] (imputed)	N
1814	chr6	161111699	161111700	rs186696265	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (mother's age at death or mother's attained age)	up to 699,000 individuals	NA	6q26	LPA	rs186696265-C		8E-9				Illumina [458525]	N
1814	chr6	161111699	161111700	rs186696265	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	6q26	NR	rs186696265-?	NR	2E-6		12.24796	[7.24-17.26] unit increase	Illumina [32003504] (imputed)	N
1814	chr6	161111699	161111700	rs186696265	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	6q26	NR	rs186696265-?	NR	4E-7		11.34911	[6.94-15.76] unit increase	Illumina [31808917] (imputed)	N
1814	chr6	161111699	161111700	rs186696265	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6q26	NR	rs186696265-C	NR	8E-64		0.359	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1814	chr6	161111699	161111700	rs186696265	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6q26	NR	rs186696265-C	0.989	5E-64	(EA)	0.372	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1814	chr6	161111699	161111700	rs186696265	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6q26	NR	rs186696265-C	NR	4E-69		0.382	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1814	chr6	161111699	161111700	rs186696265	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6q26	NR	rs186696265-C	0.989	3E-69	(EA)	0.397	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1814	chr6	161111699	161111700	rs186696265	29227965	Pilling LC	2017-12-01	Aging (Albany NY)	Human longevity: 25 genetic loci associated in 389,166 UK biobank participants.	Parental longevity (combined parental attained age, Martingale residuals)	389,166 British ancestry individuals	NA	6q26	NR	rs186696265-C	0.985233	8E-18		0.0802938	[0.062-0.099] unit decrease	Affymetrix [11535925] (imputed)	N
1814	chr6	161111699	161111700	rs186696265	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	6q26	intergenic	rs186696265-T	0.0131	5E-92		0.5467	[0.49-0.6] unit increase	NR [8041861] (imputed)	N
1814	chr6	161111699	161111700	rs186696265	28753643	Yeo A	2017-07-28	PLoS One	Pharmacogenetic meta-analysis of baseline risk factors, pharmacodynamic, efficacy and tolerability endpoints from two large global cardiovascular outcomes trials for darapladib.	Lipoprotein phospholipase A2 activity in cardiovascular disease	22,156 European, Asian, African, Arabic, Native American, Pacific Islander and other ancestry	NA	6q26	intergenic	rs186696265-T	0.01809	1E-12		12.07	[8.76-15.38] (nmol/min/ml) increase	Affymetrix, Illumina [13572687] (imputed)	N
1814	chr6	161111699	161111700	rs186696265	28512139	Mack S	2017-05-16	J Lipid Res	A genome-wide association meta-analysis on lipoprotein (a) concentrations adjusted for apolipoprotein (a) isoforms.	Lipoprotein(a) levels adjusted for apolipoprotein(a) isoforms	13,781 European ancestry individuals	NA	6q26	LPA	rs186696265-T		2E-207		49.06	[46.85-51.27] unit increase	Affymetrix, Illumina [at least 7600000] (imputed)	N
1814	chr6	161111699	161111700	rs186696265	28512139	Mack S	2017-05-16	J Lipid Res	A genome-wide association meta-analysis on lipoprotein (a) concentrations adjusted for apolipoprotein (a) isoforms.	Lipoprotein (a) levels	13,781 European ancestry individuals	NA	6q26	LPA	rs186696265-T		4E-231		64.74	[62.11-67.37] mg/dL increase	Affymetrix, Illumina [at least 7600000] (imputed)	N
1814	chr6	161111699	161111700	rs186696265	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	LDL cholesterol	up 62,166 European ancestry individuals	NA	6q26	LPA	rs186696265-T	0.01	4E-14		0.262	[0.19-0.33] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
1814	chr6	161118146	161118153	rs140799884	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	6q26		rs140799884-C	NR	9E-9		0.0162	[0.011-0.022] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
1814	chr6	161118146	161118153	rs140799884	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Monokine induced by gamma interferon levels	3,685 Finnish ancestry individuals	NA	6q26	NR	rs140799884-C	NR	2E-7		0.2046	[0.13-0.28] SD units decrease	NR [10700000] (imputed)	N
1814	chr6	161123450	161123451	rs4252185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in IDL	115,082 European ancestry individuals	NA	6q26		rs4252185-T	0.900323	6E-9		0.0398513	[0.026-0.053] unit decrease	NR [11722792] (imputed)	N
1814	chr6	161123450	161123451	rs4252185	28512139	Mack S	2017-05-16	J Lipid Res	A genome-wide association meta-analysis on lipoprotein (a) concentrations adjusted for apolipoprotein (a) isoforms.	Lipoprotein (a) levels	13,781 European ancestry individuals	NA	6q26	LPA	rs4252185-C		5E-211		23.93	[22.64-25.22] mg/dL increase	Affymetrix, Illumina [at least 7600000] (imputed)	N
1814	chr6	161123450	161123451	rs4252185	26343387	Nikpay M	2015-09-07	Nat Genet	A comprehensive 1,000 Genomes-based genome-wide association meta-analysis of coronary artery disease.	Coronary artery disease	42,096 European ancestry cases, 361 African American cases, 758 Hispanic American cases, 12,658 South Asian ancestry cases, 1,802 Lebanese ancestry cases, 3,614 East Asian ancestry cases, 99,121 European ancestry controls, 2,778 African American controls, 3,337 Hispanic American controls, 12,899 South Asian ancestry controls, 466 Lebanese ancestry controls, 7,709 East Asian ancestry controls	NA	6q26	PLG	rs4252185-C	0.059661	2E-32		1.34	[1.28- 1.41]	Affymetrix, Illumina [8600000] (imputed)	N
1814	chr6	161125418	161125419	rs9458010	28512139	Mack S	2017-05-16	J Lipid Res	A genome-wide association meta-analysis on lipoprotein (a) concentrations adjusted for apolipoprotein (a) isoforms.	Lipoprotein (a) levels	13,781 European ancestry individuals	NA	6q26	LPA	rs9458010-C		4E-12		2.84	[2.25-3.43] mg/dL increase	Affymetrix, Illumina [at least 7600000] (imputed)	N
1814	chr6	161125630	161125631	rs12529361	28512139	Mack S	2017-05-16	J Lipid Res	A genome-wide association meta-analysis on lipoprotein (a) concentrations adjusted for apolipoprotein (a) isoforms.	Lipoprotein (a) levels	13,781 European ancestry individuals	NA	6q26	LPA	rs12529361-C		6E-69		4.97	[4.2-5.74] mg/dL increase	Affymetrix, Illumina [at least 7600000] (imputed)	N
1814	chr6	161127500	161127501	rs73015965	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	6q26	PLG	rs73015965-G	0.01	4E-8		1.43	[1.34-1.53]	Illumina [at least 560000] (imputed)	N
1814	chr6	161127500	161127501	rs73015965	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	6q26	PLG	rs73015965-?	NR	4E-8		1.434	[1.262-1.630]	Illumina [13754664] (imputed)	N
1814	chr6	161129012	161129013	rs59614420	28512139	Mack S	2017-05-16	J Lipid Res	A genome-wide association meta-analysis on lipoprotein (a) concentrations adjusted for apolipoprotein (a) isoforms.	Lipoprotein(a) levels adjusted for apolipoprotein(a) isoforms	13,781 European ancestry individuals	NA	6q26	LPA	rs59614420-A		1E-6		4.48	[3.98-4.98] unit decrease	Affymetrix, Illumina [at least 7600000] (imputed)	N
1814	chr6	161134123	161134124	rs145535174	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	6q26		rs145535174-G	NR	2E-9		0.2548	[0.17-0.34] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1814	chr6	161134123	161134124	rs145535174	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Platelet count	444,866 European ancestry individuals	NA	6q26		rs145535174-?	NR	3E-14		0.303943	[0.23-0.38] unit increase	NR [9800000] (imputed)	N
1814	chr6	161134123	161134124	rs145535174	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q26	NR	rs145535174-G	NR	1E-11		0.373	[0.27-0.48] unit decrease	Affymetrix [9000000] (imputed)	N
1814	chr6	161134123	161134124	rs145535174	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	6q26	PLG	rs145535174-G	7.43999999999967E-4	6E-11		0.27904063	[0.2-0.36] unit increase	Affymetrix [93095623] (imputed)	N
1814	chr6	161134123	161134124	rs145535174	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q26	NR	rs145535174-A	0.999264	1E-10				Affymetrix, Illumina [24588908] (imputed)	N
1814	chr6	161134123	161134124	rs145535174	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	6q26	NR	rs145535174-A	0.999264	1E-12		0.264387	[0.19-0.34] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1814	chr6	161135201	161135202	rs3900809	29855589	Chernus J	2018-05-31	Sci Rep	GWAS reveals loci associated with velopharyngeal dysfunction.	Velopharyngeal dysfunction	54 Hispanic or Latin American and unknown ancestry cases, 922 Hispanic or Latin American and unknown ancestry controls	NA	6q26	NR	rs3900809-?	NR	3E-7		0.09919429	[NR] unit decrease	Illumina [at least 269494] (imputed)	N
1814	chr6	161137662	161137663	rs4252109	28512139	Mack S	2017-05-16	J Lipid Res	A genome-wide association meta-analysis on lipoprotein (a) concentrations adjusted for apolipoprotein (a) isoforms.	Lipoprotein (a) levels	13,781 European ancestry individuals	NA	6q26	LPA	rs4252109-G		5E-105		4.91	[4.32-5.5] mg/dL decrease	Affymetrix, Illumina [at least 7600000] (imputed)	N
1814	chr6	161137778	161137779	rs14224	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q26	NR	rs14224-C	NR	1E-277		0.0956	[0.09-0.101] unit increase	Affymetrix [9000000] (imputed)	N
1814	chr6	161137989	161137990	rs783147	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	6q26	NR	rs783147-?		3E-12	(LPA)	0.3569	[NR] unit decrease	Illumina [NR]	N
1814	chr6	161137989	161137990	rs783147	21900290	Qi Q	2011-09-06	Eur Heart J	Genetic variants, plasma lipoprotein(a) levels, and risk of cardiovascular morbidity and mortality among two prospective cohorts of type 2 diabetes.	Lp (a) levels	1,450 European ancestry individuals	NA	6q26	PLG	rs783147-A	0.45	3E-17		0.3	[0.22-0.38] mg/dL decrease	Illumina [~ 2500000] (imputed)	N
1814	chr6	161143375	161143376	rs4252117	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PTN	5,368 Icelandic ancestry individuals	NA	6q26		rs4252117-G	0.268	7E-12		0.116283	[0.083-0.15] unit increase	Illumina [7506463] (imputed)	N
1814	chr6	161150069	161150070	rs191108153	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	6q26		rs191108153-G	0.99435	5E-8		0.153838	[0.099-0.209] unit increase	NR [11722792] (imputed)	N
1814	chr6	161150069	161150070	rs191108153	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	6q26		rs191108153-G	0.994355	7E-10		0.17238	[0.12-0.23] unit decrease	NR [11722792] (imputed)	N
1814	chr6	161150069	161150070	rs191108153	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	6q26		rs191108153-G	0.994355	2E-9		0.171437	[0.12-0.23] unit decrease	NR [11722792] (imputed)	N
1814	chr6	161152818	161152819	rs4252128	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q26	NR	rs4252128-T	NR	2E-28		0.3211	[0.26-0.38] unit increase	Affymetrix [9000000] (imputed)	N
1814	chr6	161152904	161152905	rs4252129	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6q26	PLG	rs4252129-T	0.016	1E-25	(Angiostatin, PLG.3710.49.2)	1.01	[0.81-1.21] unit decrease	Affymetrix [10572788] (imputed)	N
1814	chr6	161152904	161152905	rs4252129	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6q26	PLG	rs4252129-T	0.016	1E-13	(ATP-dependent RNA helicase DHX8, DHX8.11601.26.3)	0.73	[0.53-0.93] unit decrease	Affymetrix [10572788] (imputed)	N
1814	chr6	161152904	161152905	rs4252129	25208887	Ma Q	2014-09-10	Blood	Genetic variants in PLG, LPA, and SIGLEC 14 as well as smoking contribute to plasma plasminogen levels.	Plasma plasminogen levels	up to 3,244 European ancestry individuals	NA	6q26	PLG	rs4252129-T	0.02	2E-26		0.159	[0.13-0.19] unit decrease	Illumina [up to 4514079] (imputed)	N
1814	chr6	161153526	161153527	rs4252134	28041642	Carmona FD	2016-12-29	Am J Hum Genet	A Genome-wide Association Study Identifies Risk Alleles in Plasminogen and P4HA2 Associated with Giant Cell Arteritis.	Giant cell arteritis	2,134 European ancestry cases, 9,125 European ancestry controls	NA	6q26	PLG	rs4252134-?	0.28	1E-10		1.28	[1.19-1.39]	Illumina [1844133] (imputed)	N
1814	chr6	161155263	161155264	rs537579467	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6q26	NR	rs537579467-C	0.016	1E-24	(Angiostatin, PLG.3710.49.2)	1.02	[0.82-1.22] unit increase	Affymetrix [10572788] (imputed)	N
1814	chr6	161157309	161157310	rs4252193	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q26	NR	rs4252193-T	NR	2E-155		0.3192	[0.3-0.34] unit decrease	Affymetrix [9000000] (imputed)	N
1814	chr6	161159365	161159366	rs4252152	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q26	NR	rs4252152-G	NR	6E-271		0.3862	[0.36-0.41] unit increase	Affymetrix [9000000] (imputed)	N
1814	chr6	161160643	161160644	rs4252159	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q26	NR	rs4252159-A	NR	1E-139		0.1261	[0.12-0.14] unit increase	Affymetrix [9000000] (imputed)	N
1814	chr6	161161903	161161904	rs4252166	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q26	NR	rs4252166-C	NR	8E-243		0.1189	[0.11-0.13] unit decrease	Affymetrix [9000000] (imputed)	N
1814	chr6	161162289	161162290	rs1835346	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	6q26	PLG	rs1835346-A	0.976127	3E-9		0.0388839	[0.026-0.052] unit increase	Affymetrix [NR] (imputed)	N
1814	chr6	161163073	161163074	rs783184	35264221	Caron B	2022-03-09	Genome Med	Integrative genetic and immune cell analysis of plasma proteins in healthy donors identifies novel associations involving primary immune deficiency genes.	Lp a plasma levels	400 French ancestry individuals	NA	6q26		rs783184-T	NR	2E-7		0.405	[0.2-0.61] ug/mL decrease	Illumina [5201092] (imputed)	N
1814	chr6	161163529	161163530	rs147402310	28512139	Mack S	2017-05-16	J Lipid Res	A genome-wide association meta-analysis on lipoprotein (a) concentrations adjusted for apolipoprotein (a) isoforms.	Lipoprotein (a) levels	13,781 European ancestry individuals	NA	6q26	LPA	rs147402310-G		9E-32		7.19	[5.13-9.25] mg/dL decrease	Affymetrix, Illumina [at least 7600000] (imputed)	N
1814	chr6	161164289	161164290	rs144177163	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large VLDL	115,082 European ancestry individuals	NA	6q26		rs144177163-C	0.96912	7E-10		0.0716646	[0.049-0.094] unit decrease	NR [11722792] (imputed)	N
1814	chr6	161164289	161164290	rs144177163	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6q26		rs144177163-C	0.96912	4E-11		0.0775627	[0.055-0.101] unit decrease	NR [11722792] (imputed)	N
1814	chr6	161164289	161164290	rs144177163	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in VLDL	115,082 European ancestry individuals	NA	6q26		rs144177163-C	0.96912	1E-8		0.0667999	[0.044-0.09] unit decrease	NR [11722792] (imputed)	N
1814	chr6	161164289	161164290	rs144177163	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total triglycerides levels	115,082 European ancestry individuals	NA	6q26		rs144177163-C	0.96912	4E-8		0.0642885	[0.041-0.087] unit decrease	NR [11722792] (imputed)	N
1814	chr6	161164289	161164290	rs144177163	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6q26		rs144177163-C	0.96912	6E-11		0.0765828	[0.054-0.1] unit decrease	NR [11722792] (imputed)	N
1814	chr6	161164289	161164290	rs144177163	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	6q26		rs144177163-C	0.969112	1E-9		0.0684098	[0.046-0.091] unit decrease	NR [11722792] (imputed)	N
1814	chr6	161164289	161164290	rs144177163	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to monounsaturated fatty acids	115,006 European ancestry individuals	NA	6q26		rs144177163-C	0.969112	1E-9		0.0707131	[0.048-0.094] unit increase	NR [11722792] (imputed)	N
1814	chr6	161164289	161164290	rs144177163	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of monounsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	6q26		rs144177163-C	0.969112	1E-8		0.0666944	[0.044-0.09] unit decrease	NR [11722792] (imputed)	N
1814	chr6	161164289	161164290	rs144177163	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6q26		rs144177163-C	0.96912	5E-11		0.0765594	[0.054-0.099] unit decrease	NR [11722792] (imputed)	N
1814	chr6	161164289	161164290	rs144177163	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	6q26		rs144177163-C	0.96912	1E-9		0.0704682	[0.048-0.093] unit increase	NR [11722792] (imputed)	N
1814	chr6	161164289	161164290	rs144177163	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6q26		rs144177163-C	0.96912	9E-11		0.0758323	[0.053-0.099] unit decrease	NR [11722792] (imputed)	N
1814	chr6	161164289	161164290	rs144177163	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of chylomicrons and extremely large VLDL particles	115,082 European ancestry individuals	NA	6q26		rs144177163-C	0.96912	3E-10		0.0738357	[0.051-0.097] unit decrease	NR [11722792] (imputed)	N
1814	chr6	161164289	161164290	rs144177163	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6q26		rs144177163-C	0.96912	2E-10		0.0752819	[0.052-0.098] unit decrease	NR [11722792] (imputed)	N
1814	chr6	161164289	161164290	rs144177163	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6q26		rs144177163-C	0.96912	7E-11		0.0764367	[0.053-0.099] unit decrease	NR [11722792] (imputed)	N
1814	chr6	161164289	161164290	rs144177163	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for VLDL particles	115,082 European ancestry individuals	NA	6q26		rs144177163-C	0.96912	8E-10		0.0697069	[0.047-0.092] unit decrease	NR [11722792] (imputed)	N
1814	chr6	161170854	161170855	rs79570361	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	6q26	NR	rs79570361-G	NR	5E-10		0.0278	[0.019-0.037] unit decrease	Affymetrix [9000000] (imputed)	N
1814	chr6	161170854	161170855	rs79570361	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q26	NR	rs79570361-G	NR	3E-19		0.0467	[0.037-0.057] unit increase	Affymetrix [9000000] (imputed)	N
1814	chr6	161173727	161173728	rs4252198	28512139	Mack S	2017-05-16	J Lipid Res	A genome-wide association meta-analysis on lipoprotein (a) concentrations adjusted for apolipoprotein (a) isoforms.	Lipoprotein(a) levels adjusted for apolipoprotein(a) isoforms	13,781 European ancestry individuals	NA	6q26	LPA	rs4252198-G		4E-38		14.9	[12.73-17.07] unit increase	Affymetrix, Illumina [at least 7600000] (imputed)	N
1814	chr6	161173727	161173728	rs4252198	28512139	Mack S	2017-05-16	J Lipid Res	A genome-wide association meta-analysis on lipoprotein (a) concentrations adjusted for apolipoprotein (a) isoforms.	Lipoprotein (a) levels	13,781 European ancestry individuals	NA	6q26	LPA	rs4252198-G		3E-84		27.97	[25.39-30.55] mg/dL increase	Affymetrix, Illumina [at least 7600000] (imputed)	N
1814	chr6	161177442	161177443	rs117534432	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	6q26		rs117534432-C	0.962438	7E-9		0.0660338	[0.044-0.088] unit increase	NR [11722792] (imputed)	N
1814	chr6	161177442	161177443	rs117534432	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large VLDL	115,082 European ancestry individuals	NA	6q26		rs117534432-C	0.962309	3E-8		0.0596899	[0.039-0.081] unit increase	NR [11722792] (imputed)	N
1814	chr6	161177442	161177443	rs117534432	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large VLDL	115,082 European ancestry individuals	NA	6q26		rs117534432-C	0.962309	3E-9		0.064022	[0.043-0.085] unit increase	NR [11722792] (imputed)	N
1814	chr6	161177442	161177443	rs117534432	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6q26		rs117534432-C	0.962309	1E-11		0.0739241	[0.053-0.095] unit increase	NR [11722792] (imputed)	N
1814	chr6	161177442	161177443	rs117534432	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in VLDL	115,082 European ancestry individuals	NA	6q26		rs117534432-C	0.962309	4E-8		0.0593337	[0.038-0.081] unit increase	NR [11722792] (imputed)	N
1814	chr6	161177442	161177443	rs117534432	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large VLDL	115,082 European ancestry individuals	NA	6q26		rs117534432-C	0.962309	8E-9		0.0623921	[0.041-0.084] unit increase	NR [11722792] (imputed)	N
1814	chr6	161177442	161177443	rs117534432	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium VLDL	115,082 European ancestry individuals	NA	6q26		rs117534432-C	0.962309	4E-8		0.0612623	[0.039-0.083] unit increase	NR [11722792] (imputed)	N
1814	chr6	161177442	161177443	rs117534432	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6q26		rs117534432-C	0.962309	2E-10		0.069032	[0.048-0.09] unit increase	NR [11722792] (imputed)	N
1814	chr6	161177442	161177443	rs117534432	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large VLDL	115,082 European ancestry individuals	NA	6q26		rs117534432-C	0.962309	3E-9		0.0642123	[0.043-0.085] unit increase	NR [11722792] (imputed)	N
1814	chr6	161177442	161177443	rs117534432	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6q26		rs117534432-C	0.962309	4E-9		0.0633831	[0.042-0.085] unit increase	NR [11722792] (imputed)	N
1814	chr6	161177442	161177443	rs117534432	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in VLDL	115,082 European ancestry individuals	NA	6q26		rs117534432-C	0.962309	4E-8		0.0610259	[0.039-0.083] unit increase	NR [11722792] (imputed)	N
1814	chr6	161177442	161177443	rs117534432	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	6q26		rs117534432-C	0.962438	3E-10		0.070649	[0.049-0.093] unit decrease	NR [11722792] (imputed)	N
1814	chr6	161177442	161177443	rs117534432	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	6q26		rs117534432-C	0.962309	3E-9		0.0644586	[0.043-0.086] unit increase	NR [11722792] (imputed)	N
1814	chr6	161177442	161177443	rs117534432	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6q26		rs117534432-C	0.962309	4E-9		0.0639855	[0.043-0.085] unit increase	NR [11722792] (imputed)	N
1814	chr6	161177442	161177443	rs117534432	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large VLDL particles	115,082 European ancestry individuals	NA	6q26		rs117534432-C	0.962309	4E-8		0.0592494	[0.038-0.08] unit increase	NR [11722792] (imputed)	N
1814	chr6	161177442	161177443	rs117534432	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small LDL particles	115,082 European ancestry individuals	NA	6q26		rs117534432-C	0.962309	1E-8		0.0640547	[0.042-0.086] unit increase	NR [11722792] (imputed)	N
1814	chr6	161177442	161177443	rs117534432	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium VLDL particles	115,082 European ancestry individuals	NA	6q26		rs117534432-C	0.962309	3E-8		0.0622795	[0.04-0.084] unit increase	NR [11722792] (imputed)	N
1814	chr6	161177442	161177443	rs117534432	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium LDL particles	115,082 European ancestry individuals	NA	6q26		rs117534432-C	0.962309	2E-9		0.0678043	[0.046-0.09] unit increase	NR [11722792] (imputed)	N
1814	chr6	161177442	161177443	rs117534432	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of chylomicrons and extremely large VLDL particles	115,082 European ancestry individuals	NA	6q26		rs117534432-C	0.962309	1E-9		0.0657087	[0.045-0.087] unit increase	NR [11722792] (imputed)	N
1814	chr6	161177442	161177443	rs117534432	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large VLDL	115,082 European ancestry individuals	NA	6q26		rs117534432-C	0.962309	2E-8		0.0619235	[0.04-0.084] unit increase	NR [11722792] (imputed)	N
1814	chr6	161177442	161177443	rs117534432	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6q26		rs117534432-C	0.962309	3E-8		0.0603867	[0.039-0.082] unit increase	NR [11722792] (imputed)	N
1814	chr6	161177442	161177443	rs117534432	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	6q26		rs117534432-C	0.962438	4E-8		0.0620551	[0.04-0.084] unit decrease	NR [11722792] (imputed)	N
1814	chr6	161177442	161177443	rs117534432	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6q26		rs117534432-C	0.962309	5E-9		0.0633279	[0.042-0.085] unit increase	NR [11722792] (imputed)	N
1814	chr6	161177442	161177443	rs117534432	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for VLDL particles	115,082 European ancestry individuals	NA	6q26		rs117534432-C	0.962309	2E-8		0.058788	[0.038-0.079] unit increase	NR [11722792] (imputed)	N
1814	chr6	161177755	161177756	rs184278183	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Linoleic acid levels	115,006 European ancestry individuals	NA	6q26		rs184278183-C	0.990872	1E-8		0.125802	[0.083-0.169] unit increase	NR [11722792] (imputed)	N
1814	chr6	161177755	161177756	rs184278183	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Treatment or medication use - atorvastatin (UKB data field 20003_1141146234)	13,604 European ancestry cases, 442,672 European ancestry controls	NA	6q26		rs184278183-T	0.007835	2E-10		0.46	[0.32-0.6] unit increase	NR [11842647] (imputed)	N
1814	chr6	161177755	161177756	rs184278183	28512139	Mack S	2017-05-16	J Lipid Res	A genome-wide association meta-analysis on lipoprotein (a) concentrations adjusted for apolipoprotein (a) isoforms.	Lipoprotein (a) levels	13,781 European ancestry individuals	NA	6q26	LPA	rs184278183-T		9E-34		26.25	[22.99-29.51] mg/dL increase	Affymetrix, Illumina [at least 7600000] (imputed)	N
1814	chr6	161181874	161181875	rs144788267	26377243	Li J	2015-09-17	J Hum Genet	Genome- and exome-wide association study of serum lipoprotein (a) in the Jackson Heart Study.	Lipoprotein (a) levels	2,895 African American individuals	NA	6q26	PLG	rs144788267-A	0.03	5E-30		0.83	[0.69-0.97] unit increase	Affymetrix [up to 38000000] (imputed)	N
1814	chr6	161190515	161190516	rs116881261	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q26	NR	rs116881261-A	NR	1E-102		0.1916	[0.17-0.21] unit decrease	Affymetrix [9000000] (imputed)	N
1814	chr6	161192060	161192061	rs34209387	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	6q26		rs34209387-T	0.982478	7E-11		0.105046	[0.074-0.137] unit decrease	NR [11722792] (imputed)	N
1814	chr6	161192060	161192061	rs34209387	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	6q26		rs34209387-T	0.982478	9E-10		0.0972877	[0.066-0.128] unit increase	NR [11722792] (imputed)	N
1814	chr6	161192060	161192061	rs34209387	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	6q26		rs34209387-T	0.982478	1E-9		0.0976692	[0.066-0.129] unit increase	NR [11722792] (imputed)	N
1814	chr6	161192060	161192061	rs34209387	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	6q26		rs34209387-T	0.982478	3E-11		0.105957	[0.075-0.137] unit increase	NR [11722792] (imputed)	N
1814	chr6	161197086	161197087	rs1620921	25575512	Lu W	2015-01-09	Hum Mol Genet	Evidence for several independent genetic variants affecting lipoprotein (a) cholesterol levels.	Lipoprotein (a) - cholesterol levels	1,376 Old Order Amish individuals	NA	6q26	intergenic	rs1620921-?	NR	5E-8				Affymetrix [~ 2500000] (imputed)	N
1814	chr6	161200365	161200366	rs185990325	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total fatty acid levels	115,006 European ancestry individuals	NA	6q26		rs185990325-A	0.99431	3E-8		0.157796	[0.1-0.21] unit increase	NR [11722792] (imputed)	N
1814	chr6	161200365	161200366	rs185990325	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Saturated fatty acid levels	115,006 European ancestry individuals	NA	6q26		rs185990325-A	0.99431	6E-9		0.165194	[0.11-0.22] unit increase	NR [11722792] (imputed)	N
1814	chr6	161203755	161203756	rs1247559	30218097	Munz M	2018-09-14	Eur J Hum Genet	Meta-analysis of genome-wide association studies of aggressive and chronic periodontitis identifies two novel risk loci.	Periodontitis	4,102 European ancestry cases, 8,489 European ancestry controls	993 European ancestry cases, 1,419 European ancestry controls	6q26		rs1247559-C		4E-6		1.19	[1.10-1.28]	Affymetrix, Illumina [1722107] (imputed)	N
1814	chr6	161205282	161205283	rs150683617	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PLG	5,360 Icelandic ancestry individuals	NA	6q26		rs150683617-C	0.02466	3E-20		0.550201	[0.43-0.67] unit increase	Illumina [7506463] (imputed)	N
1814	chr6	161212056	161212057	rs142717575	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6q26		rs142717575-G	0.973861	6E-9		0.0773013	[0.051-0.103] unit decrease	NR [11722792] (imputed)	N
1814	chr6	161212056	161212057	rs142717575	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	6q26		rs142717575-G	0.973861	2E-9		0.0782096	[0.053-0.104] unit decrease	NR [11722792] (imputed)	N
1814	chr6	161212056	161212057	rs142717575	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6q26		rs142717575-G	0.973861	3E-8		0.0724511	[0.047-0.098] unit decrease	NR [11722792] (imputed)	N
1814	chr6	161212056	161212057	rs142717575	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in HDL	115,082 European ancestry individuals	NA	6q26		rs142717575-G	0.973861	5E-8		0.0736074	[0.047-0.1] unit decrease	NR [11722792] (imputed)	N
1814	chr6	161212056	161212057	rs142717575	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large VLDL	115,082 European ancestry individuals	NA	6q26		rs142717575-G	0.973861	3E-8		0.073091	[0.047-0.099] unit decrease	NR [11722792] (imputed)	N
1814	chr6	161212056	161212057	rs142717575	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	6q26		rs142717575-G	0.973857	9E-10		0.0812184	[0.055-0.107] unit increase	NR [11722792] (imputed)	N
1814	chr6	161212056	161212057	rs142717575	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	6q26		rs142717575-G	0.973857	8E-9		0.0762345	[0.05-0.102] unit increase	NR [11722792] (imputed)	N
1814	chr6	161212056	161212057	rs142717575	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6q26		rs142717575-G	0.973861	5E-8		0.0716073	[0.046-0.097] unit increase	NR [11722792] (imputed)	N
1814	chr6	161212056	161212057	rs142717575	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6q26		rs142717575-G	0.973861	4E-9		0.0780977	[0.052-0.104] unit increase	NR [11722792] (imputed)	N
1814	chr6	161212056	161212057	rs142717575	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large VLDL particles	115,082 European ancestry individuals	NA	6q26		rs142717575-G	0.973861	4E-8		0.0726494	[0.047-0.099] unit decrease	NR [11722792] (imputed)	N
1814	chr6	161212056	161212057	rs142717575	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	6q26		rs142717575-G	0.973807	5E-9		0.0767503	[0.051-0.103] unit increase	NR [11722792] (imputed)	N
1814	chr6	161212056	161212057	rs142717575	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6q26		rs142717575-G	0.973861	1E-9		0.0786927	[0.053-0.104] unit increase	NR [11722792] (imputed)	N
1814	chr6	161212056	161212057	rs142717575	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	6q26		rs142717575-G	0.973861	3E-8		0.073896	[0.048-0.1] unit increase	NR [11722792] (imputed)	N
1814	chr6	161212056	161212057	rs142717575	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	6q26		rs142717575-G	0.973807	9E-9		0.0755211	[0.05-0.101] unit increase	NR [11722792] (imputed)	N
1814	chr6	161212056	161212057	rs142717575	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6q26		rs142717575-G	0.973861	4E-9		0.0762136	[0.051-0.102] unit increase	NR [11722792] (imputed)	N
1814	chr6	161214794	161214795	rs144981713	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TDO2	5,364 Icelandic ancestry individuals	NA	6q26		rs144981713-C	0.01291	1E-24		0.880111	[0.71-1.05] unit decrease	Illumina [7506463] (imputed)	N
1814	chr6	161214794	161214795	rs144981713	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PLG	5,360 Icelandic ancestry individuals	NA	6q26		rs144981713-C	0.01291	6E-15		0.654786	[0.49-0.82] unit decrease	Illumina [7506463] (imputed)	N
1814	chr6	161214794	161214795	rs144981713	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PLG	5,357 Icelandic ancestry individuals	NA	6q26		rs144981713-C	0.01291	2E-49		1.18892	[1.03-1.35] unit decrease	Illumina [7506463] (imputed)	N
1814	chr6	161217543	161217544	rs35509017	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q26	NR	rs35509017-C	NR	1E-192		0.3587	[0.33-0.38] unit decrease	Affymetrix [9000000] (imputed)	N
1815	chr6	161221379	161221380	rs139699952	28512139	Mack S	2017-05-16	J Lipid Res	A genome-wide association meta-analysis on lipoprotein (a) concentrations adjusted for apolipoprotein (a) isoforms.	Lipoprotein (a) levels	13,781 European ancestry individuals	NA	6q26	LPA	rs139699952-C		5E-11		6.79	[4.46-9.12] mg/dL increase	Affymetrix, Illumina [at least 7600000] (imputed)	N
1815	chr6	161226938	161226939	rs783150	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6q26	PLG, RP1-81D8.5	rs783150-T	0.1135678	9E-15	(EA, Plasminogen)	0.5174	[0.39-0.65] unit decrease	Affymetrix [509946]	N
1815	chr6	161235141	161235142	rs2565722	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6q26	RP1-81D8.6	rs2565722-T	0.1663306	4E-13	(EA, Plasminogen)	0.4196	[0.31-0.53] unit increase	Affymetrix [509946]	N
1815	chr6	161240760	161240761	rs73027818	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	6q26	NR	rs73027818-?	NR	9E-8		0.3794	[0.24-0.52] unit increase	Illumina [at least 560000] (imputed)	N
1815	chr6	161256528	161256529	rs12191307	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6q26	NR	rs12191307-G	0.91359375	8E-15	(PLG, 3710_49_2)	0.3497539	[0.26-0.44] unit increase	Illumina [> 1000000] (imputed)	N
1815	chr6	161256528	161256529	rs12191307	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6q26	NR	rs12191307-G	0.91359375	7E-12	(TDO2, 9880_33_3)	0.3053314	[0.22-0.39] unit increase	Illumina [> 1000000] (imputed)	N
1815	chr6	161256528	161256529	rs12191307	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6q26	NR	rs12191307-G	0.91359375	3E-36	(PLG, 4151_6_2)	0.5483754	[0.46-0.63] unit increase	Illumina [> 1000000] (imputed)	N
1815	chr6	161257952	161257953	rs34371670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6q26		rs34371670-C	0.982521	6E-9		0.0899887	[0.06-0.12] unit decrease	NR [11722792] (imputed)	N
1815	chr6	161259258	161259259	rs75108267	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q26	NR	rs75108267-T	NR	2E-39		0.1179	[0.1-0.14] unit decrease	Affymetrix [9000000] (imputed)	N
1815	chr6	161260780	161260781	rs117536381	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q26	NR	rs117536381-A	NR	3E-39		0.0905	[0.077-0.104] unit decrease	Affymetrix [9000000] (imputed)	N
1815	chr6	161270780	161270781	rs2489929	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PLG	5,357 Icelandic ancestry individuals	NA	6q26		rs2489929-T	0.149	5E-27		0.272257	[0.22-0.32] unit increase	Illumina [7506463] (imputed)	N
1815	chr6	161283928	161283929	rs2489940	28512139	Mack S	2017-05-16	J Lipid Res	A genome-wide association meta-analysis on lipoprotein (a) concentrations adjusted for apolipoprotein (a) isoforms.	Lipoprotein (a) levels	13,781 European ancestry individuals	NA	6q26	LPA	rs2489940-T		2E-32		8.69	[6.28-11.1] mg/dL decrease	Affymetrix, Illumina [at least 7600000] (imputed)	N
1815	chr6	161292837	161292838	rs145099029	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	6q26	intergenic	rs145099029-A	0.993	5E-7		0.204	[0.13-0.28] unit decrease	Affymetrix [7947838] (imputed)	N
1815	chr6	161305762	161305763	rs142799378	26377243	Li J	2015-09-17	J Hum Genet	Genome- and exome-wide association study of serum lipoprotein (a) in the Jackson Heart Study.	Lipoprotein (a) levels	2,895 African American individuals	NA	6q26	MAP3K4	rs142799378-G	0.02	7E-23		0.81	[0.65-0.97] unit increase	Affymetrix [up to 38000000] (imputed)	N
1815	chr6	161310909	161310910	rs2465854	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q26	NR	rs2465854-A	NR	4E-21		0.0351	[0.028-0.042] unit increase	Affymetrix [9000000] (imputed)	N
1815	chr6	161326976	161326977	rs117053814	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q26	NR	rs117053814-C	NR	1E-66		0.1056	[0.094-0.118] unit increase	Affymetrix [9000000] (imputed)	N
1815	chr6	161329914	161329915	rs532754706	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	6q26		rs532754706-A	0.976945	3E-21		0.152838	[0.12-0.18] unit decrease	NR [11722792] (imputed)	N
1815	chr6	161329914	161329915	rs532754706	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	6q26		rs532754706-A	0.976945	5E-26		0.17059	[0.14-0.2] unit increase	NR [11722792] (imputed)	N
1815	chr6	161333936	161333937	rs1247318	22773346	Edwards DR	2012-07-07	Age (Dordr)	Linkage and association of successful aging to the 6q25 region in large Amish kindreds.	Aging	263 Amish individuals aged 80 years or older	NA	6q26	MAP3K4, PLG	rs1247318-?	0.10	3E-6				Affymetrix [630309]	N
1815	chr6	161334561	161334562	rs11961006	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q26	NR	rs11961006-G	NR	4E-180		0.0902	[0.084-0.096] unit decrease	Affymetrix [9000000] (imputed)	N
1815	chr6	161348668	161348669	rs79135559	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q26	NR	rs79135559-A	NR	6E-195		0.2833	[0.26-0.3] unit decrease	Affymetrix [9000000] (imputed)	N
1815	chr6	161349325	161349326	rs7756550	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	6q26	NR	rs7756550-C	NR	5E-11		0.0237	[0.017-0.031] unit decrease	Affymetrix [9000000] (imputed)	N
1815	chr6	161349325	161349326	rs7756550	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	6q26	NR	rs7756550-C	NR	9E-10		0.0221	[0.015-0.029] unit decrease	Affymetrix [9000000] (imputed)	N
1816	chr6	161363704	161363705	rs11752957	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q26	NR	rs11752957-T	NR	4E-81		0.0849	[0.076-0.094] unit decrease	Affymetrix [9000000] (imputed)	N
1816	chr6	161368267	161368268	rs9458066	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q26	NR	rs9458066-T	NR	1E-13		0.0541	[0.04-0.068] unit decrease	Affymetrix [9000000] (imputed)	N
1816	chr6	161375969	161375970	rs997739748	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	135,808 East Asian ancestry individuals	NA	6q26		rs997739748-G	0.004033	2E-14		0.22886	[0.17-0.29] unit increase	Illumina [13476599] (imputed)	N
1816	chr6	161378191	161378192	rs590884	26305897	Iyengar SK	2015-08-25	PLoS Genet	Genome-Wide Association and Trans-ethnic Meta-Analysis for Advanced Diabetic Kidney Disease: Family Investigation of Nephropathy and Diabetes (FIND).	Diabetic kidney disease	1,564 African American cases, 369  African American diabetic controls, 1,288 African American non-diabetic controls, 538 American Indian ancestry cases, 319 American Indian ancestry diabetic controls, 342 European ancestry cases, 404 European ancestry diabetic controls, 779 Mexican ancestry cases, 594 Mexican ancestry diabetic controls	950 African American cases, 50 African American diabetic controls, 1,887 African American non-diabetic controls, 471 American Indian ancestry cases, 340 American Indian ancestry diabetic controls, 486 American Indian ancestry non-diabetic controls, 582 European ancestry ancestry cases, 205 European ancestry diabetic controls, 2,568 European ancestry non-diabetic controls	6q26	NR	rs590884-?	0.66	2E-6	(AA, additive )	1.25		Affymetrix [NR]	N
1816	chr6	161380019	161380020	rs1149348	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6q26	NR	rs1149348-T	0.095	4E-6	(IFNGR1_of_CD20p)			Illumina [5084123] (imputed)	N
1816	chr6	161383078	161383079	rs143843429	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	6q26		rs143843429-A	0.983942	1E-8		0.0932066	[0.061-0.125] unit increase	NR [11722792] (imputed)	N
1816	chr6	161383078	161383079	rs143843429	29227965	Pilling LC	2017-12-01	Aging (Albany NY)	Human longevity: 25 genetic loci associated in 389,166 UK biobank participants.	Parental longevity (combined parental attained age, Martingale residuals)	389,166 British ancestry individuals	NA	6q26	NR	rs143843429-A	0.983804	4E-9		0.0549336	[0.037-0.073] unit decrease	Affymetrix [11535925] (imputed)	N
1816	chr6	161388211	161388212	rs73023847	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q26	NR	rs73023847-G	NR	1E-79		0.0961	[0.086-0.106] unit decrease	Affymetrix [9000000] (imputed)	N
1816	chr6	161400901	161400902	rs150919447	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	6q26	PLG, MAP3K4	rs150919447-G	0.01	7E-7	(EA)	0.4276	[0.26-0.59] unit increase	Illumina [~ 9000000] (imputed)	N
1816	chr6	161400901	161400902	rs150919447	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	6q26	PLG, MAP3K4	rs150919447-G	0.01	2E-6		0.408	[0.24-0.57] unit increase	Illumina [~ 9000000] (imputed)	N
1816	chr6	161414390	161414391	rs62438071	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q26	NR	rs62438071-G	NR	4E-40		0.0904	[0.077-0.104] unit decrease	Affymetrix [9000000] (imputed)	N
1816	chr6	161432465	161432466	rs75803286	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q26	NR	rs75803286-T	NR	1E-60		0.1169	[0.1-0.13] unit decrease	Affymetrix [9000000] (imputed)	N
1816	chr6	161438263	161438264	rs180718963	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium VLDL	115,082 European ancestry individuals	NA	6q26		rs180718963-C	0.987903	2E-8		0.107719	[0.07-0.145] unit increase	NR [11722792] (imputed)	N
1816	chr6	161438263	161438264	rs180718963	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in VLDL	115,082 European ancestry individuals	NA	6q26		rs180718963-C	0.987903	7E-12		0.129844	[0.093-0.167] unit increase	NR [11722792] (imputed)	N
1816	chr6	161438263	161438264	rs180718963	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in VLDL	115,082 European ancestry individuals	NA	6q26		rs180718963-C	0.987903	2E-10		0.121772	[0.084-0.159] unit increase	NR [11722792] (imputed)	N
1816	chr6	161438263	161438264	rs180718963	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	6q26		rs180718963-C	0.987903	3E-11		0.124658	[0.088-0.161] unit increase	NR [11722792] (imputed)	N
1816	chr6	161438263	161438264	rs180718963	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in VLDL	115,082 European ancestry individuals	NA	6q26		rs180718963-C	0.987903	1E-9		0.116696	[0.079-0.154] unit increase	NR [11722792] (imputed)	N
1816	chr6	161438263	161438264	rs180718963	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large VLDL	115,082 European ancestry individuals	NA	6q26		rs180718963-C	0.987903	2E-10		0.120647	[0.083-0.158] unit increase	NR [11722792] (imputed)	N
1816	chr6	161438263	161438264	rs180718963	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large VLDL	115,082 European ancestry individuals	NA	6q26		rs180718963-C	0.987903	7E-9		0.110651	[0.073-0.148] unit increase	NR [11722792] (imputed)	N
1816	chr6	161438263	161438264	rs180718963	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	6q26		rs180718963-C	0.987903	7E-12		0.129658	[0.093-0.167] unit increase	NR [11722792] (imputed)	N
1816	chr6	161438263	161438264	rs180718963	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	6q26		rs180718963-C	0.987903	3E-10		0.119127	[0.082-0.156] unit increase	NR [11722792] (imputed)	N
1816	chr6	161445747	161445748	rs112496830	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q26	NR	rs112496830-A	NR	4E-66		0.1043	[0.092-0.116] unit increase	Affymetrix [9000000] (imputed)	N
1816	chr6	161465296	161465297	rs3798911	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6q26	MAP3K4, RP3-428L16.2	rs3798911-G	0.4613842	2E-12	(EA, Plasminogen)	0.293	[0.21-0.37] unit increase	Affymetrix [509946]	N
1816	chr6	161469773	161469774	rs4559074	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q26	NR	rs4559074-A	NR	5E-25		0.0656	[0.053-0.078] unit decrease	Affymetrix [9000000] (imputed)	N
1816	chr6	161472027	161472028	rs76841061	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q26	NR	rs76841061-G	NR	7E-25		0.1153	[0.093-0.137] unit decrease	Affymetrix [9000000] (imputed)	N
1817	chr6	161486252	161486253	rs62435486	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q26	NR	rs62435486-A	NR	1E-46		0.1074	[0.093-0.122] unit decrease	Affymetrix [9000000] (imputed)	N
1817	chr6	161490219	161490220	rs3757020	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q26	NR	rs3757020-T	NR	4E-61		0.1361	[0.12-0.15] unit decrease	Affymetrix [9000000] (imputed)	N
1817	chr6	161503023	161503024	rs144240142	28333195	Uimari O	2017-04-01	Hum Reprod	Genome-wide genetic analyses highlight mitogen-activated protein kinase (MAPK) signaling in the pathogenesis of endometriosis.	Ovarian disease with few adhesions	1,686 European ancestry cases, 7,060 European ancestry controls.		6q26	MAP3K4	rs144240142-?	NR	6E-8		1.71	[1.23-2.37]	Illumina [NR] (imputed)	N
1817	chr6	161512445	161512446	rs55704622	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q26	NR	rs55704622-A	NR	1E-41		0.1787	[0.15-0.2] unit increase	Affymetrix [9000000] (imputed)	N
1817	chr6	161517917	161517918	rs55644026	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q26	NR	rs55644026-A	NR	1E-19		0.1179	[0.092-0.143] unit increase	Affymetrix [9000000] (imputed)	N
1817	chr6	161550918	161550919	rs2293285	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q26	NR	rs2293285-T	NR	6E-92		0.1372	[0.12-0.15] unit increase	Affymetrix [9000000] (imputed)	N
1817	chr6	161551175	161551176	rs55754459	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	6q26	NR	rs55754459-G	NR	2E-12		0.0504	[0.036-0.065] unit increase	Affymetrix [9000000] (imputed)	N
1817	chr6	161551175	161551176	rs55754459	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	6q26	NR	rs55754459-G	NR	1E-15		0.0574	[0.043-0.072] unit increase	Affymetrix [9000000] (imputed)	N
1817	chr6	161551175	161551176	rs55754459	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q26	NR	rs55754459-G	NR	1E-22		0.0867	[0.069-0.104] unit increase	Affymetrix [9000000] (imputed)	N
1817	chr6	161551175	161551176	rs55754459	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	6q26	NR	rs55754459-G	NR	2E-15		0.0572	[0.043-0.071] unit increase	Affymetrix [9000000] (imputed)	N
1817	chr6	161551438	161551439	rs2293289	25575512	Lu W	2015-01-09	Hum Mol Genet	Evidence for several independent genetic variants affecting lipoprotein (a) cholesterol levels.	Lipoprotein (a) - cholesterol levels	1,376 Old Order Amish individuals	NA	6q26	AGPAT4	rs2293289-?	NR	3E-8				Affymetrix [~ 2500000] (imputed)	N
1817	chr6	161551875	161551876	rs55666532	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q26	NR	rs55666532-A	NR	1E-24		0.0667	[0.054-0.079] unit increase	Affymetrix [9000000] (imputed)	N
1817	chr6	161554723	161554724	rs13201283	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q26	NR	rs13201283-G	NR	7E-33		0.1004	[0.084-0.117] unit decrease	Affymetrix [9000000] (imputed)	N
1817	chr6	161556592	161556593	rs55978942	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q26	NR	rs55978942-A	NR	2E-45		0.1785	[0.15-0.2] unit decrease	Affymetrix [9000000] (imputed)	N
1817	chr6	161558035	161558036	rs7768457	28476931	Piaggi P	2017-05-05	Diabetes	A Genome-Wide Association Study Using a Custom Genotyping Array Identifies Variants in GPR158 Associated With Reduced Energy Expenditure in American Indians.	Energy expenditure (24h)	419 Pima Indian ancestry individuals	NA	6q26	AGPAT4	rs7768457-G	0.69	6E-6		49.021145	[27.76-70.28] kcal/day decrease	Affymetrix [491265]	N
1817	chr6	161560460	161560461	rs61735260	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small VLDL	115,082 European ancestry individuals	NA	6q26		rs61735260-G	0.987561	3E-10		0.113412	[0.078-0.149] unit increase	NR [11722792] (imputed)	N
1817	chr6	161560460	161560461	rs61735260	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium VLDL	115,082 European ancestry individuals	NA	6q26		rs61735260-G	0.987561	4E-11		0.119005	[0.084-0.154] unit increase	NR [11722792] (imputed)	N
1817	chr6	161560460	161560461	rs61735260	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium LDL	115,082 European ancestry individuals	NA	6q26		rs61735260-G	0.987561	3E-8		0.100629	[0.065-0.136] unit increase	NR [11722792] (imputed)	N
1817	chr6	161560460	161560461	rs61735260	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large VLDL	115,082 European ancestry individuals	NA	6q26		rs61735260-G	0.987561	2E-12		0.126788	[0.092-0.162] unit increase	NR [11722792] (imputed)	N
1817	chr6	161560460	161560461	rs61735260	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large VLDL	115,082 European ancestry individuals	NA	6q26		rs61735260-G	0.987561	4E-12		0.124398	[0.089-0.16] unit increase	NR [11722792] (imputed)	N
1817	chr6	161560460	161560461	rs61735260	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Monounsaturated fatty acid levels	115,006 European ancestry individuals	NA	6q26		rs61735260-G	0.987557	2E-9		0.110815	[0.075-0.147] unit increase	NR [11722792] (imputed)	N
1817	chr6	161560460	161560461	rs61735260	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large VLDL particles	115,082 European ancestry individuals	NA	6q26		rs61735260-G	0.987561	2E-12		0.126778	[0.092-0.162] unit increase	NR [11722792] (imputed)	N
1817	chr6	161560460	161560461	rs61735260	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q26	NR	rs61735260-A	NR	5E-511		0.5752	[0.55-0.6] unit increase	Affymetrix [9000000] (imputed)	N
1817	chr6	161565179	161565180	rs118155311	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q26	NR	rs118155311-A	NR	1E-11		0.0555	[0.039-0.072] unit increase	Affymetrix [9000000] (imputed)	N
1817	chr6	161565640	161565641	rs73015431	28476931	Piaggi P	2017-05-05	Diabetes	A Genome-Wide Association Study Using a Custom Genotyping Array Identifies Variants in GPR158 Associated With Reduced Energy Expenditure in American Indians.	Energy expenditure (24h)	419 Pima Indian ancestry individuals	NA	6q26	AGPAT4	rs73015431-T	0.6	1E-6		50.57351	[30.04-71.11] kcal/day decrease	Affymetrix [491265]	N
1817	chr6	161566684	161566685	rs79213545	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q26	NR	rs79213545-A	NR	8E-263		0.2431	[0.23-0.26] unit increase	Affymetrix [9000000] (imputed)	N
1817	chr6	161575542	161575543	rs1040724	32314116	Zhang H	2020-04-20	Osteoporos Int	Pleiotropic loci underlying bone mineral density and bone size identified by a bivariate genome-wide association analysis.	Hip bone size	3,267 European ancestry individuals, 1,619 Chinese ancestry individuals, 843 African American individuals, 446 Hispanic individuals	NA	6q26	NR	rs1040724-T	NR	4E-7		0.14	[0.081-0.199] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1817	chr6	161575542	161575543	rs1040724	32314116	Zhang H	2020-04-20	Osteoporos Int	Pleiotropic loci underlying bone mineral density and bone size identified by a bivariate genome-wide association analysis.	Bone mineral density (hip) and hip bone size	3,267 European ancestry individuals, 1,619 Chinese ancestry individuals, 843 African American individuals, 446 Hispanic individuals	NA	6q26	NR	rs1040724-T	NR	2E-8				Affymetrix, Illumina [NR] (imputed)	N
1817	chr6	161607129	161607130	rs78771139	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q26	NR	rs78771139-C	NR	3E-53		0.1169	[0.1-0.13] unit decrease	Affymetrix [9000000] (imputed)	N
1817	chr6	161608251	161608252	rs76779653	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q26	NR	rs76779653-A	NR	3E-60		0.0787	[0.069-0.088] unit increase	Affymetrix [9000000] (imputed)	N
1818	chr6	161628659	161628660	rs74797747	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q26	NR	rs74797747-A	NR	1E-88		0.1096	[0.099-0.12] unit decrease	Affymetrix [9000000] (imputed)	N
1818	chr6	161654114	161654115	rs9295143	28512139	Mack S	2017-05-16	J Lipid Res	A genome-wide association meta-analysis on lipoprotein (a) concentrations adjusted for apolipoprotein (a) isoforms.	Lipoprotein(a) levels adjusted for apolipoprotein(a) isoforms	13,781 European ancestry individuals	NA	6q26	LPA	rs9295143-G		8E-9		3.01	[1.92-4.1] unit decrease	Affymetrix, Illumina [at least 7600000] (imputed)	N
1818	chr6	161655356	161655357	rs3798939	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q26	NR	rs3798939-A	NR	9E-160		0.0841	[0.078-0.09] unit decrease	Affymetrix [9000000] (imputed)	N
1818	chr6	161659368	161659369	rs148349043	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	6q26		rs148349043-C	0.9865120000000001	2E-17		0.156819	[0.12-0.19] unit increase	NR [11722792] (imputed)	N
1818	chr6	161659368	161659369	rs148349043	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6q26		rs148349043-C	0.986456	8E-12		0.12558	[0.09-0.162] unit increase	NR [11722792] (imputed)	N
1818	chr6	161659368	161659369	rs148349043	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	6q26		rs148349043-C	0.986698	3E-26		0.205718	[0.17-0.24] unit increase	NR [11722792] (imputed)	N
1818	chr6	161659368	161659369	rs148349043	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large HDL	115,082 European ancestry individuals	NA	6q26		rs148349043-C	0.986456	3E-10		0.117643	[0.081-0.154] unit increase	NR [11722792] (imputed)	N
1818	chr6	161659368	161659369	rs148349043	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small LDL	115,082 European ancestry individuals	NA	6q26		rs148349043-C	0.986456	1E-20		0.172114	[0.14-0.21] unit increase	NR [11722792] (imputed)	N
1818	chr6	161659368	161659369	rs148349043	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total triglycerides levels	115,082 European ancestry individuals	NA	6q26		rs148349043-C	0.986456	3E-20		0.169475	[0.13-0.21] unit increase	NR [11722792] (imputed)	N
1818	chr6	161659368	161659369	rs148349043	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	6q26		rs148349043-C	0.986455	5E-8		0.100068	[0.064-0.136] unit decrease	NR [11722792] (imputed)	N
1818	chr6	161659368	161659369	rs148349043	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	6q26		rs148349043-C	0.9865120000000001	2E-10		0.117704	[0.081-0.154] unit decrease	NR [11722792] (imputed)	N
1818	chr6	161659368	161659369	rs148349043	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6q26		rs148349043-C	0.986456	7E-16		0.148535	[0.11-0.18] unit decrease	NR [11722792] (imputed)	N
1818	chr6	161659368	161659369	rs148349043	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	6q26		rs148349043-C	0.986456	2E-14		0.139585	[0.1-0.18] unit decrease	NR [11722792] (imputed)	N
1818	chr6	161659368	161659369	rs148349043	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	6q26		rs148349043-C	0.986698	1E-28		0.213258	[0.18-0.25] unit decrease	NR [11722792] (imputed)	N
1818	chr6	161659368	161659369	rs148349043	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	6q26		rs148349043-C	0.9865120000000001	9E-25		0.187873	[0.15-0.22] unit decrease	NR [11722792] (imputed)	N
1818	chr6	161659368	161659369	rs148349043	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6q26		rs148349043-C	0.986456	1E-9		0.108672	[0.074-0.144] unit decrease	NR [11722792] (imputed)	N
1818	chr6	161659368	161659369	rs148349043	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	6q26		rs148349043-C	0.986698	2E-18		0.170072	[0.13-0.21] unit decrease	NR [11722792] (imputed)	N
1818	chr6	161659368	161659369	rs148349043	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	6q26		rs148349043-C	0.9865120000000001	7E-23		0.179974	[0.14-0.22] unit decrease	NR [11722792] (imputed)	N
1818	chr6	161659368	161659369	rs148349043	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6q26		rs148349043-C	0.986456	8E-9		0.10351	[0.068-0.139] unit decrease	NR [11722792] (imputed)	N
1818	chr6	161659368	161659369	rs148349043	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	6q26		rs148349043-C	0.986455	6E-16		0.15092	[0.11-0.19] unit decrease	NR [11722792] (imputed)	N
1818	chr6	161659368	161659369	rs148349043	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	6q26		rs148349043-C	0.986698	3E-25		0.20013	[0.16-0.24] unit decrease	NR [11722792] (imputed)	N
1818	chr6	161660099	161660100	rs138458033	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large VLDL	115,082 European ancestry individuals	NA	6q26		rs138458033-C	0.986348	3E-25		0.187867	[0.15-0.22] unit increase	NR [11722792] (imputed)	N
1818	chr6	161660099	161660100	rs138458033	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large VLDL	115,082 European ancestry individuals	NA	6q26		rs138458033-C	0.986348	3E-23		0.180744	[0.15-0.22] unit increase	NR [11722792] (imputed)	N
1818	chr6	161660099	161660100	rs138458033	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6q26		rs138458033-C	0.986348	2E-41		0.246481	[0.21-0.28] unit increase	NR [11722792] (imputed)	N
1818	chr6	161660099	161660100	rs138458033	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in VLDL	115,082 European ancestry individuals	NA	6q26		rs138458033-C	0.986348	6E-24		0.183761	[0.15-0.22] unit increase	NR [11722792] (imputed)	N
1818	chr6	161660099	161660100	rs138458033	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large VLDL	115,082 European ancestry individuals	NA	6q26		rs138458033-C	0.986348	6E-23		0.179719	[0.14-0.22] unit increase	NR [11722792] (imputed)	N
1818	chr6	161660099	161660100	rs138458033	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6q26		rs138458033-C	0.986348	7E-36		0.227924	[0.19-0.26] unit increase	NR [11722792] (imputed)	N
1818	chr6	161660099	161660100	rs138458033	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	6q26		rs138458033-C	0.986347	1E-17		0.150638	[0.12-0.19] unit increase	NR [11722792] (imputed)	N
1818	chr6	161660099	161660100	rs138458033	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	6q26		rs138458033-C	0.986347	1E-9		0.110347	[0.075-0.146] unit decrease	NR [11722792] (imputed)	N
1818	chr6	161660099	161660100	rs138458033	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to monounsaturated fatty acids	115,006 European ancestry individuals	NA	6q26		rs138458033-C	0.986347	6E-10		0.112491	[0.077-0.148] unit decrease	NR [11722792] (imputed)	N
1818	chr6	161660099	161660100	rs138458033	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of monounsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	6q26		rs138458033-C	0.986347	4E-9		0.107155	[0.072-0.143] unit increase	NR [11722792] (imputed)	N
1818	chr6	161660099	161660100	rs138458033	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6q26		rs138458033-C	0.986348	5E-18		0.164066	[0.13-0.2] unit decrease	NR [11722792] (imputed)	N
1818	chr6	161660099	161660100	rs138458033	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	6q26		rs138458033-C	0.986596	3E-10		0.12095	[0.083-0.159] unit decrease	NR [11722792] (imputed)	N
1818	chr6	161660099	161660100	rs138458033	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large VLDL	115,082 European ancestry individuals	NA	6q26		rs138458033-C	0.986348	5E-22		0.176322	[0.14-0.21] unit increase	NR [11722792] (imputed)	N
1818	chr6	161660099	161660100	rs138458033	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6q26		rs138458033-C	0.986348	1E-29		0.20517	[0.17-0.24] unit increase	NR [11722792] (imputed)	N
1818	chr6	161660099	161660100	rs138458033	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	6q26		rs138458033-C	0.986348	1E-21		0.174868	[0.14-0.21] unit increase	NR [11722792] (imputed)	N
1818	chr6	161660099	161660100	rs138458033	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6q26		rs138458033-C	0.986348	2E-30		0.208979	[0.17-0.24] unit increase	NR [11722792] (imputed)	N
1818	chr6	161660099	161660100	rs138458033	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large VLDL particles	115,082 European ancestry individuals	NA	6q26		rs138458033-C	0.986348	9E-21		0.169905	[0.13-0.21] unit increase	NR [11722792] (imputed)	N
1818	chr6	161660099	161660100	rs138458033	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of chylomicrons and extremely large VLDL particles	115,082 European ancestry individuals	NA	6q26		rs138458033-C	0.986348	6E-31		0.210263	[0.17-0.25] unit increase	NR [11722792] (imputed)	N
1818	chr6	161660099	161660100	rs138458033	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6q26		rs138458033-C	0.986348	2E-18		0.166354	[0.13-0.2] unit increase	NR [11722792] (imputed)	N
1818	chr6	161660099	161660100	rs138458033	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	6q26		rs138458033-C	0.986347	2E-20		0.168674	[0.13-0.2] unit decrease	NR [11722792] (imputed)	N
1818	chr6	161660099	161660100	rs138458033	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6q26		rs138458033-C	0.986348	3E-27		0.197806	[0.16-0.23] unit increase	NR [11722792] (imputed)	N
1818	chr6	161660099	161660100	rs138458033	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6q26		rs138458033-C	0.986348	7E-29		0.203465	[0.17-0.24] unit increase	NR [11722792] (imputed)	N
1818	chr6	161660099	161660100	rs138458033	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for VLDL particles	115,082 European ancestry individuals	NA	6q26		rs138458033-C	0.986348	4E-29		0.198015	[0.16-0.23] unit increase	NR [11722792] (imputed)	N
1818	chr6	161661484	161661485	rs75893573	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q26	NR	rs75893573-G	NR	2E-10		0.0539	[0.037-0.071] unit decrease	Affymetrix [9000000] (imputed)	N
1818	chr6	161666189	161666190	rs12197517	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q26	NR	rs12197517-C	NR	4E-18		0.0313	[0.024-0.038] unit decrease	Affymetrix [9000000] (imputed)	N
1818	chr6	161667051	161667052	rs73782827	28701861	Randall CL	2017-06-15	Pain Res Manag	A Preliminary Genome-Wide Association Study of Pain-Related Fear: Implications for Orofacial Pain.	Fear of pain	Up to 1,367 European ancestry individuals, up to 159 African American individuals, up to 13 Hispanic individuals, up to 23 Asian, Native American and other ancestry individuals, up to 21 individuals	NA	6q26	AGPAT4, PARK2	rs73782827-G	0.01	1E-6		10.84	unit decrease	Illumina [8591557] (imputed)	N
1818	chr6	161667051	161667052	rs73782827	28701861	Randall CL	2017-06-15	Pain Res Manag	A Preliminary Genome-Wide Association Study of Pain-Related Fear: Implications for Orofacial Pain.	Fear of minor pain	Up to 1,367 European ancestry individuals, up to 159 African American individuals, up to 13 Hispanic individuals, up to 23 Asian, Native American and other ancestry individuals, up to 21 individuals	NA	6q26	NR	rs73782827-G	0.01	3E-8		3.8	unit decrease	Illumina [8591557] (imputed)	N
1818	chr6	161675490	161675491	rs3798943	24047446	Schosser A	2013-09-19	World J Biol Psychiatry	Genome-wide association study of co-occurring anxiety in major depression.	Anxiety in major depressive disorder	1,080 European ancestry cases, 442 European ancestry controls	NA	6q26	AGPAT4	rs3798943-?	0.53	8E-6	(Dichotomous)	1.45	[NR]	Illumina [471581]	N
1818	chr6	161686791	161686792	rs75534358	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q26	NR	rs75534358-A	NR	1E-24		0.0687	[0.056-0.082] unit decrease	Affymetrix [9000000] (imputed)	N
1818	chr6	161697399	161697400	rs3757037	26377243	Li J	2015-09-17	J Hum Genet	Genome- and exome-wide association study of serum lipoprotein (a) in the Jackson Heart Study.	Lipoprotein (a) levels	2,895 African American individuals	NA	6q26	AGPAT4	rs3757037-G	0.66	3E-13		0.2	[0.14-0.26] unit increase	Affymetrix [up to 38000000] (imputed)	N
1818	chr6	161701725	161701726	rs75975688	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q26	NR	rs75975688-C	NR	5E-23		0.1463	[0.12-0.18] unit increase	Affymetrix [9000000] (imputed)	N
1818	chr6	161702137	161702138	rs150571318	28512139	Mack S	2017-05-16	J Lipid Res	A genome-wide association meta-analysis on lipoprotein (a) concentrations adjusted for apolipoprotein (a) isoforms.	Lipoprotein (a) levels	13,781 European ancestry individuals	NA	6q26	LPA	rs150571318-A		7E-11		6.55	[3.58-9.52] mg/dL increase	Affymetrix, Illumina [at least 7600000] (imputed)	N
1818	chr6	161702269	161702270	rs374255	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q26	NR	rs374255-A	NR	4E-95		0.0552	[0.05-0.06] unit decrease	Affymetrix [9000000] (imputed)	N
1818	chr6	161709130	161709131	rs9355878	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	6q26		rs9355878-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1818	chr6	161712034	161712035	rs1080085	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	6q26	NR	rs1080085-G	0.29	1E-6		1.08	[1.04-1.12]	Illumina [8468885] (imputed)	N
1818	chr6	161712234	161712235	rs9456648	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	NA	6q26	AGPAT4	rs9456648-C	0.6767000000000001	3E-10		0.1166	[0.08-0.153] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1818	chr6	161712879	161712880	rs9347486	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q26	NR	rs9347486-G	NR	3E-26		0.034	[0.028-0.04] unit decrease	Affymetrix [9000000] (imputed)	N
1818	chr6	161715721	161715722	rs9365267	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Stem cell growth factor beta levels	3,682 Finnish ancestry individuals	NA	6q26	NR	rs9365267-C		6E-6		0.2717	[0.15-0.39] SD units increase	NR [10700000] (imputed)	N
1818	chr6	161716159	161716160	rs71565801	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q26	NR	rs71565801-C	NR	3E-58		0.1105	[0.097-0.124] unit decrease	Affymetrix [9000000] (imputed)	N
1818	chr6	161720022	161720023	rs12194934	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q26	NR	rs12194934-C	NR	2E-26		0.0284	[0.023-0.034] unit decrease	Affymetrix [9000000] (imputed)	N
1819	chr6	161770810	161770811	rs71653628	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q26	NR	rs71653628-T	NR	8E-14		0.0458	[0.034-0.058] unit increase	Affymetrix [9000000] (imputed)	N
1819	chr6	161777041	161777042	rs9456663	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Monokine induced by gamma interferon levels	3,685 Finnish ancestry individuals	NA	6q26	NR	rs9456663-C	NR	9E-6		0.1141	[0.064-0.164] SD units increase	NR [10700000] (imputed)	N
1819	chr6	161777499	161777500	rs116989098	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q26	NR	rs116989098-T	NR	1E-18		0.0864	[0.067-0.106] unit increase	Affymetrix [9000000] (imputed)	N
1819	chr6	161777719	161777720	rs73021251	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q26	NR	rs73021251-A	NR	2E-18		0.0381	[0.029-0.047] unit increase	Affymetrix [9000000] (imputed)	N
1819	chr6	161779091	161779092	rs73021253	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q26	NR	rs73021253-A	NR	1E-12		0.0421	[0.031-0.054] unit decrease	Affymetrix [9000000] (imputed)	N
1819	chr6	161801042	161801043	rs75786741	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q26	NR	rs75786741-T	NR	3E-27		0.0894	[0.073-0.106] unit decrease	Affymetrix [9000000] (imputed)	N
1819	chr6	161855677	161855678	rs117339141	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q26	NR	rs117339141-A	NR	2E-13		0.1155	[0.085-0.146] unit increase	Affymetrix [9000000] (imputed)	N
1819	chr6	161856131	161856132	rs12661014	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q26	NR	rs12661014-G	NR	7E-13		0.0191	[0.014-0.024] unit increase	Affymetrix [9000000] (imputed)	N
1819	chr6	161859816	161859817	rs17647667	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6q26	AGPAT4	rs17647667-?	NR	4E-6	(asymmetric dimethylarginine)	0.2625587	[0.15-0.37] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1819	chr6	161871754	161871755	rs113398446	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	IgD+ CD38- B cell %B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	6q26		rs113398446-C	0.16972	4E-8		0.1793	[0.12-0.24] unit increase	Illumina [18238311] (imputed)	N
1820	chr6	161933934	161933935	rs16892673	22773346	Edwards DR	2012-07-07	Age (Dordr)	Linkage and association of successful aging to the 6q25 region in large Amish kindreds.	Aging	263 Amish individuals aged 80 years or older	NA	6q26	PARK2	rs16892673-?	0.06	5E-6				Affymetrix [630309]	N
1820	chr6	161940225	161940226	rs71567615	33483693	Clements CC	2021-01-22	Mol Psychiatry	Genome-wide association study of patients with a severe major depressive episode treated with electroconvulsive therapy.	Major depressive episode treated with electroconvulsive therapy	2,725 European ancestry cases, 3,290 European ancestry controls	NA	6q26	NR	rs71567615-?	NR	8E-6		1.4863	[1.31-1.66]	Illumina [NR] (imputed)	N
1820	chr6	162001435	162001436	rs992037	19043545	Gieger C	2008-11-28	PLoS Genet	Genetics meets metabolomics: a genome-wide association study of metabolite profiles in human serum.	Metabolite levels	284 European ancestry male individuals	NA	6q26	PARK2	rs992037-?	0.35	1E-7	(Lysine)			Affymetrix [187454]	N
1821	chr6	162101177	162101178	rs9689649	26908436	Siiskonen SJ	2016-02-12	Cancer Epidemiol Biomarkers Prev	A Genome-Wide Association Study of Cutaneous Squamous Cell Carcinoma among European Descendants.	Squamous cell carcinoma	745 European ancestry cases, 12,805 European ancestry controls	531 European ancestry cases, 551 European ancestry controls	6q26	PARK2	rs9689649-C	0.22	3E-6		1.38	[1.21-1.58]	Affymetrix [2392512] (imputed)	N
1821	chr6	162110560	162110561	rs140594067	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	6q26	PARK2	rs140594067-A	0.998	3E-7	(AA)	0.219	unit increase	Illumina [NR] (imputed)	N
1821	chr6	162115907	162115908	rs73031071	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	6q26	NR	rs73031071-C	NR	1E-10		0.0405	[0.028-0.053] unit decrease	Affymetrix [9000000] (imputed)	N
1821	chr6	162120602	162120603	rs146977322	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	6q26	PARK2	rs146977322-A	0.998	6E-7	(AA)	0.216	unit increase	Illumina [NR] (imputed)	N
1821	chr6	162126424	162126425	rs191369471	33730874	Said MA	2021-03-18	Arterioscler Thromb Vasc Biol	Genome-Wide Association Study and Identification of a Protective Missense Variant on Lipoprotein(a) Concentration: Protective Missense Variant on Lipoprotein(a) Concentration.	Lipoprotein (a) levels	348,591 European ancestry individuals, 6,000 African ancestry individuals, 9,116 Asian ancestry individuals, 7,505 individuals		6q26	PARK2	rs191369471-C	NR	4E-17		0.09685	[0.073-0.12] nmol/l decrease	NR [19000000] (imputed)	N
1821	chr6	162134993	162134994	rs2315551	34177453	Swart PC	2021-06-10	Front Neurosci	A Genome-Wide Association Study and Polygenic Risk Score Analysis of Posttraumatic Stress Disorder and Metabolic Syndrome in a South African Population.	Post-traumatic stress disorder	260 South African Colored cases, 343 South African Colored controls	NA	6q26		rs2315551-?	NR	2E-7		0.2941	unit increase	Illumina [11927194] (imputed)	N
1822	chr6	162147726	162147727	rs7769089	26377243	Li J	2015-09-17	J Hum Genet	Genome- and exome-wide association study of serum lipoprotein (a) in the Jackson Heart Study.	Lipoprotein (a) levels	2,895 African American individuals	NA	6q26	PARK2	rs7769089-T	0.67	5E-12		0.16	[0.12-0.2] unit increase	Affymetrix [up to 38000000] (imputed)	N
1822	chr6	162157859	162157860	rs4708928	25240745	Lopez S	2014-09-18	Mitochondrion	A genome-wide association study in the genetic analysis of idiopathic thrombophilia project suggests sex-specific regulation of mitochondrial DNA levels.	Mitochondrial DNA levels	173 European ancestry males and 213 European ancestry females from 21 families	NA	6q26	PARK2	rs4708928-?	NR	3E-6	(Females)		[NR]	Illumina [283437]	N
1822	chr6	162157859	162157860	rs4708928	25240745	Lopez S	2014-09-18	Mitochondrion	A genome-wide association study in the genetic analysis of idiopathic thrombophilia project suggests sex-specific regulation of mitochondrial DNA levels.	Mitochondrial DNA levels	173 European ancestry males and 213 European ancestry females from 21 families	NA	6q26	PARK2	rs4708928-?	NR	2E-6			[NR]	Illumina [283437]	N
1822	chr6	162161618	162161619	rs926849	22993228	Williams FM	2012-09-19	Ann Rheum Dis	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NA	6q26	PARK2	rs926849-C	0.31	3E-8		0.13	[0.083-0.177] unit decrease	Affymetrix, Illumina [2552511] (imputed)	N
1822	chr6	162163505	162163506	rs9364611	31594949	Nievergelt CM	2019-10-08	Nat Commun	International meta-analysis of PTSD genome-wide association studies identifies sex- and ancestry-specific genetic risk loci.	Post-traumatic stress disorder	23,212 European ancestry cases, 4,363 African ancestry cases, 1,981 Latino and Native American ancestry cases, 151,447 European ancestry controls, 10,976 African ancestry controls, 3,722 Latino and Native American ancestry controls	NA	6q26	NR	rs9364611-C	NR	4E-8	(EA)	1.1363636	[1.09-1.18]	Affymetrix, Illumina [~ 1175791] (imputed)	N
1822	chr6	162219853	162219854	rs9458376	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal cancer	978 Austrian ancestry colorectal cancer cases, 636 Austrian ancestry advanced colorectal adenoma cases, 4,294 European ancestry controls	NA	6q26	Intergenic	rs9458376-?		8E-6		2.005	[NR]	Affymetrix [492217] (imputed)	N
1822	chr6	162236074	162236075	rs3016539	20686608	Low SK	2010-07-29	PLoS One	Genome-wide association study of pancreatic cancer in Japanese population.	Pancreatic cancer	991 Japanese ancestry cases, 5,209 Japanese ancestry controls	NA	6q26	PARK2	rs3016539-A	0.87	7E-6	(dominant)	1.5	[1.26-1.79]	Illumina [420236]	N
1823	chr6	162274380	162274381	rs12528179	34130359	Curtis SW	2021-06-15	Genet Epidemiol	FAT4 identified as a potential modifier of orofacial cleft laterality.	Left unilateral cleft lip	68 Asian ancestry cases, 78 European ancestry cases, 70 Hispanic cases, 1,626 controls	NA	6q26	NR	rs12528179-?		9E-6		1.68	[1.34-2.12]	Illumina [539473] (imputed)	N
1823	chr6	162293643	162293644	rs34139189	28701861	Randall CL	2017-06-15	Pain Res Manag	A Preliminary Genome-Wide Association Study of Pain-Related Fear: Implications for Orofacial Pain.	Fear of minor pain	Up to 1,367 European ancestry individuals, up to 159 African American individuals, up to 13 Hispanic individuals, up to 23 Asian, Native American and other ancestry individuals, up to 21 individuals	NA	6q26	NR	rs34139189-G	0.14	8E-7		0.93	unit decrease	Illumina [8591557] (imputed)	N
1823	chr6	162314920	162314921	rs12207186	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6q26	NR	rs12207186-T	0.0677100908685969	5E-6	(IGP32)	0.2882	[0.16-0.41] unit decrease	Illumina [~ 2500000] (imputed)	N
1823	chr6	162321376	162321377	rs9355371	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	6q26	NR	rs9355371-?	NR	4E-7				Affymetrix [NR]	N
1823	chr6	162352674	162352675	rs117673608	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (negative Marder score)	1,390 European ancestry cases	NA	6q26		rs117673608-G	NR	1E-6	(GLM)	6.9628	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
1823	chr6	162352674	162352675	rs117673608	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (PANSS score)	1,390 European ancestry individuals	NA	6q26		rs117673608-G	NR	8E-7	(GLM)	26.3182	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
1823	chr6	162397505	162397506	rs57244997	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	6q26	PARK2	rs57244997-G	NR	3E-6		0.0345721	[0.02-0.049] unit increase	Illumina [13520550] (imputed)	N
1824	chr6	162401126	162401127	rs1784581	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	6q26	PARK2	rs1784581-C	NR	6E-7		0.0185516	[0.011-0.026] unit increase	Illumina [13520550] (imputed)	N
1825	chr6	162587891	162587892	rs9347594	27018472	Leslie EJ	2016-04-07	Am J Hum Genet	A Genome-wide Association Study of Nonsyndromic Cleft Palate Identifies an Etiologic Missense Variant in GRHL3.	Cleft palate	38 European ancestry cases, 835 European ancestry controls, 21 Hispanic cases, 626 Hispanic controls, 2 Asian ancestry cases, 161 Asian ancestry controls, 38 Indian ancestry controls, 15 Sub-Saharan African ancestry cases, 2 African American cases, 68 Sub-Saharan African ancestry controls, 5 African American controls, 1 African control, 4 controls, 114 European ancestry case-parent trios, 30 Hispanic case-parent trios, 39 East Asian case-parent trios, 1 South East Asian ancestry case-parent trio, 5 Sub-Saharan African case-parent trios	246 European ancestry cases, 1,685 European ancestry controls	6q26		rs9347594-T	NR	2E-6	(EA)	2.22	[1.6-3.08]	Illumina [34985077] (imputed)	N
1825	chr6	162590017	162590018	rs9456748	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 9, facial height related to vertical position of nasion)	2,187 European ancestry individuals	NA	6q26	PARK2	rs9456748-G	0.4411	5E-8		0.1651	[0.11-0.22] unit increase	Illumina [10677593] (imputed)	N
1825	chr6	162594940	162594941	rs871387	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Oscillospira)	1,068 Japanese ancestry individuals	NA	6q26	PARK2	rs871387-G	0.50	4E-6		0.0191	[0.011-0.027] unit decrease	Illumina [6380737] (imputed)	N
1825	chr6	162601571	162601572	rs12201696	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6q26	PARK2	rs12201696-?	NR	7E-6	(TAG 44:1)	0.15552433	[0.088-0.223] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1825	chr6	162612002	162612003	rs9355988	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Artificially sweetened beverage consumption	85,852 European ancestry individuals	39,924 European ancestry individuals	6q26	PARK2	rs9355988-G	0.5405	5E-6		0.0058	[0.0033-0.0083] unit increase	Affymetrix [~ 7740000] (imputed)	N
1825	chr6	162634336	162634337	rs2187213	28100725	Chen J	2017-01-18	Neurology	Genome-wide association study identifies MAPT locus influencing human plasma tau levels.	Plasma t-tau levels	463 European ancestry Alzheimer's disease cases, 163 European ancestry individuals with mild cognitive impairment, 151 European ancestry individuals	360 individuals, 27 individuals later diagnosed with mild cognitive impairment	6q26	PARK2	rs2187213-?	0.359	6E-6	(European)			Illumina [316802]	N
1826	chr6	162660988	162660989	rs2096982	34337005	Duan H	2021-07-17	Biomed Res Int	A Genome-Wide Association Study of Age-Related Hearing Impairment in Middle- and Old-Aged Chinese Twins.	Hearing function (8 kHz)	131 Chinese ancestry dizygotic twin pairs	NA	6q26		rs2096982-?	NR	5E-7				Illumina [1365315]	N
1826	chr6	162671455	162671456	rs12175475	27018472	Leslie EJ	2016-04-07	Am J Hum Genet	A Genome-wide Association Study of Nonsyndromic Cleft Palate Identifies an Etiologic Missense Variant in GRHL3.	Cleft palate	38 European ancestry cases, 835 European ancestry controls, 21 Hispanic cases, 626 Hispanic controls, 2 Asian ancestry cases, 161 Asian ancestry controls, 38 Indian ancestry controls, 15 Sub-Saharan African ancestry cases, 2 African American cases, 68 Sub-Saharan African ancestry controls, 5 African American controls, 1 African control, 4 controls, 114 European ancestry case-parent trios, 30 Hispanic case-parent trios, 39 East Asian case-parent trios, 1 South East Asian ancestry case-parent trio, 5 Sub-Saharan African case-parent trios	246 European ancestry cases, 1,685 European ancestry controls	6q26	PARK2	rs12175475-?	NR	5E-6		4.1	[0.91-18.18]	Illumina [34985077] (imputed)	N
1826	chr6	162671455	162671456	rs12175475	27018472	Leslie EJ	2016-04-07	Am J Hum Genet	A Genome-wide Association Study of Nonsyndromic Cleft Palate Identifies an Etiologic Missense Variant in GRHL3.	Cleft palate	38 European ancestry cases, 835 European ancestry controls, 21 Hispanic cases, 626 Hispanic controls, 2 Asian ancestry cases, 161 Asian ancestry controls, 38 Indian ancestry controls, 15 Sub-Saharan African ancestry cases, 2 African American cases, 68 Sub-Saharan African ancestry controls, 5 African American controls, 1 African control, 4 controls	246 European ancestry cases, 1,685 European ancestry controls	6q26	PARK2	rs12175475-?	NR	9E-9		6.6	[1.2-39.58]	Illumina [34985077] (imputed)	N
1826	chr6	162671455	162671456	rs12175475	27018472	Leslie EJ	2016-04-07	Am J Hum Genet	A Genome-wide Association Study of Nonsyndromic Cleft Palate Identifies an Etiologic Missense Variant in GRHL3.	Cleft palate	38 European ancestry cases, 835 European ancestry controls, 21 Hispanic cases, 626 Hispanic controls, 2 Asian ancestry cases, 161 Asian ancestry controls, 38 Indian ancestry controls, 15 Sub-Saharan African ancestry cases, 2 African American cases, 68 Sub-Saharan African ancestry controls, 5 African American controls, 1 African control, 4 controls	246 European ancestry cases, 1,685 European ancestry controls	6q26	PARK2	rs12175475-?	NR	1E-6	(EA)	7.4	[0.77-71.21]	Illumina [34985077] (imputed)	N
1826	chr6	162739308	162739309	rs9458519	34177453	Swart PC	2021-06-10	Front Neurosci	A Genome-Wide Association Study and Polygenic Risk Score Analysis of Posttraumatic Stress Disorder and Metabolic Syndrome in a South African Population.	Post-traumatic stress disorder	260 South African Colored cases, 343 South African Colored controls	NA	6q26		rs9458519-?	NR	3E-7		0.3013	unit decrease	Illumina [11927194] (imputed)	N
1826	chr6	162753897	162753898	rs9347624	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GRAMD1C	5,360 Icelandic ancestry individuals	NA	6q26		rs9347624-G	0.0107	4E-16		0.114182	[0.087-0.142] unit increase	Illumina [7506463] (imputed)	N
1827	chr6	162800664	162800665	rs11759064	29097723	Darlow JM	2017-11-06	Sci Rep	Genome-wide linkage and association study implicates the 10q26 region as a major genetic contributor to primary nonsyndromic vesicoureteric reflux.	Primary vesicoureteric reflux	1156 European ancestry cases and at least 1156 European ancestry controls from 548 families	NA	6q26	PARK2, PACRG	rs11759064-T	0.1298	3E-9		2.19	[NR]	Affymetrix [3563212] (imputed)	N
1827	chr6	162800947	162800948	rs117944720	29535370	Kleinstein SE	2018-02-28	Genes Immun	Genome-wide association study (GWAS) of human host factors influencing viral severity of herpes simplex virus type 2 (HSV-2).	Virologic severity in Herpes simplex virus type 2 infection	223 European ancestry individuals	NA	6q26	PARK2	rs117944720-?	NR	5E-6				Illumina [1539908]	N
1827	chr6	162806485	162806486	rs201621461	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Alanine aminotransferase levels in excessive alcohol consumption	951 individuals	NA	6q26	NR	rs201621461-?	NR	5E-6		0.0476	[0.027-0.068] unit increase	Illumina [~ 7800000] (imputed)	N
1827	chr6	162824725	162824726	rs9356013	31660654	Bandres-Ciga S	2019-10-29	Mov Disord	The Genetic Architecture of Parkinson Disease in Spain: Characterizing Population-Specific Risk, Differential Haplotype Structures, and Providing Etiologic Insight.	Parkinson's disease (age of onset)	3,997 Spanish ancestry individuals	NA	6q26	PARK2	rs9356013-?	NR	4E-13		4.11	[3.01-5.21] unit decrease	Illumina [9911207] (imputed)	N
1827	chr6	162835769	162835770	rs17438732	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	6q26	PARK2	rs17438732-G	0.682	2E-6	(AA)	0.016	unit increase	Illumina [NR] (imputed)	N
1827	chr6	162836211	162836212	rs60338266	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	6q26	PARK2	rs60338266-A	0.695	5E-6	(AA)	0.016	unit increase	Illumina [NR] (imputed)	N
1827	chr6	162836223	162836224	rs56681491	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	6q26	PARK2	rs56681491-G	0.695	5E-6	(AA)	0.016	unit increase	Illumina [NR] (imputed)	N
1827	chr6	162836295	162836296	rs13191310	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	6q26	PARK2	rs13191310-T	0.304	4E-6	(AA)	0.016	unit decrease	Illumina [NR] (imputed)	N
1827	chr6	162887479	162887480	rs115995783	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	7,894 Sub-Saharan African ancestry individuals	NA	6q26		rs115995783-A	0.850941	7E-6		0.0122689	[0.0069-0.0176] unit decrease	Illumina [13900000] (imputed)	N
1827	chr6	162896698	162896699	rs145527589	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6q26	NR	rs145527589-T	0.01045	4E-9	(FGA)	0.5148	NR unit increase	Illumina [1671387] (imputed)	N
1828	chr6	162962827	162962828	rs2803073	30972912	Wei L	2019-04-10	J Viral Hepat	Genetic variation in FCER1A predicts peginterferon alfa-2a-induced hepatitis B surface antigen clearance in East Asian patients with chronic hepatitis B.	Peginterferon alfa-2a treatment response in chronic hepatitis B infection	up to 1,108 East Asian cases, up to 465 European ancestry cases, up to 63 cases	NA	6q26	PARK2	rs2803073-?		3E-6	(endpoint 4, additive)	1.5	[NR]	Illumina [> 750000]	N
1828	chr6	162974903	162974904	rs10945840	31589552	Lind L	2019-10-07	Metab Syndr Relat Disord	Genome-Wide Association Study of the Metabolic Syndrome in UK Biobank.	Metabolic syndrome	291,107 European ancestry individuals	NA	6q26	PARK2	rs10945840-C	0.332614	4E-8		0.0382931	[0.025-0.052] unit decrease	Affymetrix [9463307] (imputed)	N
1828	chr6	162981265	162981266	rs2023016	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	6q26	Intergenic	rs2023016-C	0.7957	7E-10	(MTAG)	0.0126	[0.0087-0.0165] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1828	chr6	162981265	162981266	rs2023016	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6q26		rs2023016-C	0.7899	5E-10		0.0107	[0.0074-0.014] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1828	chr6	162981265	162981266	rs2023016	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6q26	Intergenic	rs2023016-C	0.7899	1E-11	(MTAG)	0.0109	[0.0078-0.014] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1828	chr6	163000627	163000629	rs149450675	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	6q26		rs149450675-G	NR	4E-9		0.0207	[0.014-0.028] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1828	chr6	163009334	163009335	rs36007635	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		6q26	PARK2	rs36007635-G	0.862284	6E-12		0.0137121	[0.0098-0.0176] unit increase	Affymetrix [12370749]	N
1828	chr6	163009334	163009335	rs36007635	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6q26	NR	rs36007635-?	NR	1E-13				Affymetrix [~ 8270000] (imputed)	N
1828	chr6	163009334	163009335	rs36007635	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	6q26		rs36007635-?	NR	7E-14				NR [~ 8900000] (imputed)	N
1828	chr6	163023053	163023054	rs9364664	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6q26		rs9364664-T	0.2107	2E-9	(conditional-joint)	0.0104	[0.0071-0.0137] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1828	chr6	163033349	163033350	rs13191362	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	6q26	NA	rs13191362-A	0.8572	4E-21		0.0235	[0.019-0.028] unit increase	NR [~ 27400000] (imputed)	N
1828	chr6	163033349	163033350	rs13191362	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	6q26	NA	rs13191362-A	0.8572	4E-21		0.0235	[0.019-0.028] unit increase	NR [~ 27400000] (imputed)	N
1828	chr6	163033349	163033350	rs13191362	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	6q26	NA	rs13191362-A	0.8572	4E-21		0.0235	[0.019-0.028] unit increase	NR [~ 27400000] (imputed)	N
1828	chr6	163033349	163033350	rs13191362	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	6q26	NR	rs13191362-A	NR	2E-10		0.025	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
1828	chr6	163033349	163033350	rs13191362	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6q26	PARK2	rs13191362-A	0.8808	1E-7		0.0332	[0.021-0.045] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1828	chr6	163033349	163033350	rs13191362	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6q26	PARK2	rs13191362-A	0.8807	2E-6	(women)	0.0371	[0.022-0.053] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1828	chr6	163033349	163033350	rs13191362	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6q26	PARK2	rs13191362-A	0.8789	3E-7	(EA)	0.0328	[0.02-0.045] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1828	chr6	163033349	163033350	rs13191362	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6q26	PARK2	rs13191362-A	0.878	8E-6	(EA,women)	0.0365	[0.02-0.053] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1828	chr6	163033349	163033350	rs13191362	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6q26	PARK2	rs13191362-?	NR	5E-8	(EA, women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1828	chr6	163033349	163033350	rs13191362	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6q26	PARK2	rs13191362-?	NR	5E-10	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1828	chr6	163033349	163033350	rs13191362	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6q26	PARK2	rs13191362-?	NR	2E-9	(women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1828	chr6	163033349	163033350	rs13191362	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6q26	PARK2	rs13191362-?	NR	1E-10				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1828	chr6	163033349	163033350	rs13191362	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6q26	PARK2	rs13191362-A	0.8808	2E-11		0.0371	[0.026-0.048] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1828	chr6	163033349	163033350	rs13191362	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6q26	PARK2	rs13191362-A	0.8808	1E-9	(women)	0.0435	[0.03-0.057] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1828	chr6	163033349	163033350	rs13191362	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6q26	PARK2	rs13191362-A	0.8789	3E-10	(EA)	0.0363	[0.025-0.048] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1828	chr6	163033349	163033350	rs13191362	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6q26	PARK2	rs13191362-A	0.8789	2E-8	(EA, women)	0.0412	[0.027-0.056] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1828	chr6	163033349	163033350	rs13191362	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	6q26	PARK2	rs13191362-A	0.8798	2E-9				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1828	chr6	163033349	163033350	rs13191362	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	6q26	PARK2	rs13191362-A	0.8798	2E-8	(women)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1828	chr6	163033349	163033350	rs13191362	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in non-smokers	77,279 European ancestry women, 47,280 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	6q26	PARK2	rs13191362-A	0.8798	7E-9	(women)	0.0432	[0.029-0.058] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1828	chr6	163033349	163033350	rs13191362	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in non-smokers	77,279 European ancestry women, 47,280 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	6q26	PARK2	rs13191362-A	0.8798	2E-9		0.0347	[0.023-0.046] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1828	chr6	163033349	163033350	rs13191362	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	6q26	PARK2	rs13191362-A	0.8798	9E-10		0.0315	[0.022-0.041] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1828	chr6	163033349	163033350	rs13191362	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	6q26	PARK2	rs13191362-A	0.8798	1E-8	(women)	0.0384	[0.025-0.052] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1828	chr6	163033349	163033350	rs13191362	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	6q26	NR	rs13191362-A	0.877272817859194	7E-11		0.027373856	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1828	chr6	163033349	163033350	rs13191362	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	6q26	PARK2	rs13191362-A	0.88	1E-9		0.029	[0.019-0.038] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1828	chr6	163033349	163033350	rs13191362	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	6q26	PARK2	rs13191362-A	0.879	7E-9	(EA)	0.028	[0.018-0.037] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1828	chr6	163033349	163033350	rs13191362	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	6q26	PARK2	rs13191362-A	0.878	1E-6	(EA, women)	0.03	[0.018-0.042] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1829	chr6	163054292	163054293	rs146167165	31560688	Geidenstam N	2019-09-27	PLoS One	Using metabolite profiling to construct and validate a metabolite risk score for predicting future weight gain.	Metabolite risk score for predicting weight gain	1,937 individuals	NA	6q26	PARK2	rs146167165-T	0.013	5E-7		0.986	[0.6-1.37] unit increase	Affymetrix, Illumina [up to 22000000] (imputed)	N
1829	chr6	163057268	163057269	rs2077934	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	6q26	NR	rs2077934-?	NR	1E-8				Affymetrix [NR]	N
1829	chr6	163169132	163169133	rs73013706	34822396	Pott J	2021-10-28	Metabolites	Sex-Specific Causal Relations between Steroid Hormones and Obesity-A Mendelian Randomization Study.	Testosterone to estradiol ratio	5,696 individuals	NA	6q26		rs73013706-G	NR	4E-8		0.37353	[0.24-0.51] unit decrease	Affymetrix [10900000] (imputed)	N
1829	chr6	163178325	163178326	rs9347687	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	6q26	Intergenic	rs9347687-T	0.6376	2E-8	(MTAG)	0.0133	[0.0086-0.018] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1829	chr6	163178745	163178746	rs151274007	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	6q26	PACRG	rs151274007-C	1.0	4E-6	(AA)	0.671	unit increase	Illumina [NR] (imputed)	N
1830	chr6	163193388	163193389	rs143655133	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	6q26	PACRG	rs143655133-A	1.0	4E-6	(AA)	0.667	unit increase	Illumina [NR] (imputed)	N
1830	chr6	163280203	163280204	rs4709655	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	6q26	NR	rs4709655-C	0.8809	3E-9		1.0559661	[1.04-1.07]	Affymetrix, Illumina [NR] (imputed)	N
1831	chr6	163391407	163391408	rs9355416	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	6q26		rs9355416-?	NR	6E-9				NR [~ 8900000] (imputed)	N
1831	chr6	163407230	163407231	rs142937784	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	6q26		rs142937784-T	NR	3E-6		3.2817	[1.93-4.63] unit increase	Illumina [NR] (imputed)	N
1832	chr6	163515927	163515928	rs75280683	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (executive function) x major depressive disorder interaction (2df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	6q26		rs75280683-T	0.01	3E-8				NR [NR] (imputed)	N
1832	chr6	163515927	163515928	rs75280683	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (executive function) x major depressive disorder interaction (1df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	6q26		rs75280683-T	0.01	3E-6		1.12	[0.65-1.59] unit decrease	NR [NR] (imputed)	N
1832	chr6	163530355	163530356	rs75846880	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Paracentral lobule volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	6q26	PACRG	rs75846880-?		3E-6				Illumina [4322238] (imputed)	N
1833	chr6	163638266	163638267	rs16888819	32141793	Garman L	2020-03-06	Ocul Immunol Inflamm	Genome-Wide Association Study of Ocular Sarcoidosis Confirms HLA Associations and Implicates Barrier Function and Autoimmunity in African Americans.	Ocular sarcoidosis	260 African American cases, 1,551 African American controls	NA	6q26	NR	rs16888819-?	NR	6E-6		1.7096939	[1.35-2.17]	Illumina [13976150] (imputed)	N
1834	chr6	163722763	163722764	rs4709698	30898391	Lawrenson K	2019-03-19	Gynecol Oncol	Genome-wide association studies identify susceptibility loci for epithelial ovarian cancer in east Asian women.	Epithelial ovarian cancer	3,238 East Asian ancestry cases, 4,083 East Asian ancestry controls	NA	6q26		rs4709698-?	NR	3E-6	(serous_hg)	1.24		Illumina [11595112] (imputed)	N
1834	chr6	163729349	163729350	rs185618594	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	6q26	NR	rs185618594-?	NR	9E-6		0.0076377	[0.0043-0.011] unit decrease	Affymetrix [805426] (imputed)	N
1834	chr6	163740088	163740089	rs6927207	26377243	Li J	2015-09-17	J Hum Genet	Genome- and exome-wide association study of serum lipoprotein (a) in the Jackson Heart Study.	Lipoprotein (a) levels	2,895 African American individuals	NA	6q26	PACRG-AS1	rs6927207-A	0.22	1E-11		0.19	[0.13-0.25] unit decrease	Affymetrix [up to 38000000] (imputed)	N
1834	chr6	163740321	163740322	rs9347737	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	6q26		rs9347737-G	NR	1E-10		0.0142	[0.0099-0.0185] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
1834	chr6	163740321	163740322	rs9347737	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	6q26	PACRG	rs9347737-A	0.5717	4E-12		0.0135465	[0.0097-0.0174] unit increase	Affymetrix [NR] (imputed)	N
1834	chr6	163740321	163740322	rs9347737	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	6q26	PACRG	rs9347737-A	0.571649	2E-8		0.0111895	[0.0073-0.0151] unit increase	Affymetrix [NR] (imputed)	N
1834	chr6	163743974	163743975	rs6919154	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	6q26	NR	rs6919154-A	0.591488	7E-12		0.00569159	[0.004-0.0074] unit increase	Affymetrix [16582909] (imputed)	N
1834	chr6	163743974	163743975	rs6919154	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	6q26	NR	rs6919154-A	0.591488	3E-11		0.00618671	[0.0043-0.0081] unit increase	Affymetrix [16582965] (imputed)	N
1834	chr6	163750049	163750050	rs56220231	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	6q26		rs56220231-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1834	chr6	163755815	163755816	rs9458809	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q26	NR	rs9458809-C	0.18591	1E-11				Affymetrix, Illumina [24332387] (imputed)	N
1834	chr6	163755815	163755816	rs9458809	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	6q26	NR	rs9458809-C	0.197223	7E-13		0.016984	[0.012-0.022] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1834	chr6	163756087	163756088	rs12664139	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	6q26		rs12664139-T	NR	3E-8		0.0107	[0.007-0.0144] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
1834	chr6	163756087	163756088	rs12664139	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q26	NR	rs12664139-T	0.260196	6E-11				Affymetrix, Illumina [24558453] (imputed)	N
1834	chr6	163756087	163756088	rs12664139	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	6q26	NR	rs12664139-T	0.268814	6E-13		0.015304	[0.011-0.019] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
1834	chr6	163756087	163756088	rs12664139	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	6q26		rs12664139-?	NR	1E-17				NR [~ 8900000] (imputed)	N
1834	chr6	163757126	163757127	rs9365555	31993563	Ware EB	2019-11-22	Mayo Clin Proc Innov Qual Outcomes	Genome-wide Association Study of 24-Hour Urinary Excretion of Calcium, Magnesium, and Uric Acid.	Urinary magnesium excretion	6,462 European ancestry individuals	NA	6q26	intergenic	rs9365555-A	0.69	5E-6		5.49	NR mg increase	NR [NR] (imputed)	N
1834	chr6	163757126	163757127	rs9365555	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	6q26		rs9365555-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1834	chr6	163758349	163758350	rs12527711	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	6q26		rs12527711-T	0.203721	9E-11		0.017522506	[0.012-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1834	chr6	163758349	163758350	rs12527711	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	6q26		rs12527711-T	0.203712	1E-10		0.017524939	[0.012-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1834	chr6	163758349	163758350	rs12527711	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	6q26	NR	rs12527711-T	0.206902	2E-11		0.015642	[0.011-0.02] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
1834	chr6	163772503	163772504	rs6901676	32472697	Verma SS	2020-05-30	Clin Pharmacol Ther	Genome-wide association study of platelet reactivity and cardiovascular response in patients treated with clopidogrel: a study by the International Clopidogrel Pharmacogenomics Consortium (ICPC).	Stent thrombosis in response to clopidogrel treatment	37 European ancestry cases, 2,542 European ancestry controls	NA	6q26	NA	rs6901676-?	0.236	5E-6		7.11475	NR	Illumina [5009928] (imputed)	N
1834	chr6	163807747	163807748	rs1737329	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	6q26	NR	rs1737329-G	0.742	3E-10		0.00775843	[0.0053-0.0102] unit increase	NR [9732723] (imputed)	N
1834	chr6	163807747	163807748	rs1737329	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	6q26	NR	rs1737329-G	0.742	5E-9		0.017029224	[0.011-0.023] unit increase	NR [~ 10000000] (imputed)	N
1834	chr6	163807747	163807748	rs1737329	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	6q26	Intergenic	rs1737329-C	0.2536	1E-9	(MTAG)	0.0125	[0.0084-0.0166] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1834	chr6	163807747	163807748	rs1737329	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	6q26	Intergenic	rs1737329-C	0.2536	2E-10		0.0142	[0.0099-0.0185] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1834	chr6	163815602	163815603	rs73013582	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cataracts	39,519 European ancestry cases, 452,358 European ancestry controls, 38,194 East Asian ancestry cases, 140,532 East Asian ancestry controls	NA	6q26		rs73013582-T	NR	1E-9		0.0706	[0.048-0.093] unit increase	Affymetrix, Illumina [25845331] (imputed)	N
1834	chr6	163816902	163816903	rs12194023	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	6q26		rs12194023-C	0.739	7E-10		0.008	[0.006-0.01] unit increase	NR [NR] (imputed)	N
1834	chr6	163817910	163817911	rs9364687	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	6q26	NR	rs9364687-G	NR	2E-10		0.01	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
1834	chr6	163817910	163817911	rs9364687	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	6q26	CAHM	rs9364687-G	0.571	7E-7		0.015	[0.009-0.0208] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1834	chr6	163817910	163817911	rs9364687	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	6q26	CAHM	rs9364687-G	0.569	1E-6	(EA)	0.015	[0.0089-0.0211] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1834	chr6	163817910	163817911	rs9364687	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	6q26	CAHM	rs9364687-G	0.567	9E-7	(EA, men)	0.02	[0.012-0.028] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1834	chr6	163830815	163830815	rs111436210	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	28,092 non-Hispanic White ancestry cases, 50,487 non-Hispanic White ancestry controls, 31,852 European ancestry cases, 428,084 European ancestry controls	NA		NR	rs111436210-AAC	NR	6E-12		1.0672		Affymetrix [9869154] (imputed)	N
1835	chr6	163840528	163840529	rs2784867	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	6q26	QKI	rs2784867-G	0.339151	3E-14		0.018028786	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1835	chr6	163853538	163853539	rs73015318	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	28,092 non-Hispanic White ancestry cases, 50,487 non-Hispanic White ancestry controls, 2,233 East Asian ancestry cases, 7,023 East Asian ancestry controls, 2,149 Hispanic/Latino cases, 6,620 Hispanic/Latino controls, 815 African American cases, 2,368 African American controls, 31,852 European ancestry cases, 428,084 European ancestry controls, 757 African ancestry cases, 7,897 African ancestry controls, 1,278 South Asian ancestry cases, 8,571 South Asian ancestry controls, 668 other admixed cases, 7,349 other admixed controls	313,278 European ancestry cases, 2,210,509 European ancestry controls, 7,715 African American cases, 120,390 African American controls, 3,934 East Asian ancestry cases, 104,766 East Asian ancestry controls, 21,408 Latino cases, 425,544 Latino controls, 874 South Asian ancestry cases, 26,037 South Asian ancestry controls		QKI	rs73015318-A	NR	9E-24		1.05	[1.04-1.06]	Affymetrix [9869154] (imputed)	N
1835	chr6	163941242	163941243	rs74960997	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	6q26		rs74960997-G	NR	2E-8		0.0331	[0.022-0.045] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
1835	chr6	163941242	163941243	rs74960997	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	6q26	QKI	rs74960997-G	0.026325	2E-10		0.043937027	[0.03-0.057] unit decrease	Affymetrix [93095623] (imputed)	N
1835	chr6	163941242	163941243	rs74960997	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q26	NR	rs74960997-G	0.025552	3E-10				Affymetrix, Illumina [24653286] (imputed)	N
1836	chr6	163983857	163983858	rs9458859	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	6q26		rs9458859-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1836	chr6	164007422	164007423	rs4709724	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Time-dependent creatinine clearance change response to tenofovir treatment in HIV infection (time and treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	6q26	NR	rs4709724-?		7E-6	(Hispanic)			Illumina [~ 5140000] (imputed)	N
1836	chr6	164030799	164030800	rs6941513	26950853	Dehghan A	2016-03-07	PLoS One	Genome-Wide Association Study for Incident Myocardial Infarction and Coronary Heart Disease in Prospective Cohort Studies: The CHARGE Consortium.	Incident myocardial infarction	1,570 European ancestry cases, at least 21,618 European ancestry controls	2,328 European ancestry cases, 546 African American ancestry cases, 7655 African American ancestry controls, up to 35,233 European ancestry controls	6q26	QKI	rs6941513-G	NR	6E-9	(EA)	1.2	[1.13-1.28]	Affymetrix, Illumina [2543842] (imputed)	N
1836	chr6	164092290	164092291	rs4709741	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	6q26	intergenic	rs4709741-A	0.1249	3E-8		0.022	[0.014-0.03] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1836	chr6	164092705	164092706	rs55775214	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	6q26		rs55775214-T	0.113422177	8E-9		0.08465192	[0.056-0.113] unit decrease	Illumina [13429769] (imputed)	N
1837	chr6	164105983	164105984	rs4709745	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	6q26		rs4709745-C	NR	2E-9		0.0121	[0.0082-0.016] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1837	chr6	164105983	164105984	rs4709745	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	6q26		rs4709745-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1837	chr6	164107528	164107529	rs17630640	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	6q26		rs17630640-G	NR	9E-18		0.0209	[0.016-0.026] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1837	chr6	164107528	164107529	rs17630640	31564439	Fang H	2019-09-26	Am J Hum Genet	Harmonizing Genetic Ancestry and Self-identified Race/Ethnicity in Genome-wide Association Studies.	Height	up to 248,507 non-Hispanic white individuals, up to 68,155 non-Hispanic black individuals, up to 25,847 Hispanic individuals, up to 3,054 Asian ancestry individuals	NA	6q26	NR	rs17630640-G	NR	4E-8	(EA)	0.06	NR unit increase	Affymetrix [723305]	N
1837	chr6	164107528	164107529	rs17630640	31564439	Fang H	2019-09-26	Am J Hum Genet	Harmonizing Genetic Ancestry and Self-identified Race/Ethnicity in Genome-wide Association Studies.	Height	up to 248,507 non-Hispanic white individuals, up to 68,155 non-Hispanic black individuals, up to 25,847 Hispanic individuals, up to 3,054 Asian ancestry individuals	NA	6q26	NR	rs17630640-G	NR	1E-7				Affymetrix [723305]	N
1837	chr6	164111347	164111348	rs73029259	29782485	Rueger S	2018-05-21	PLoS Genet	Evaluation and application of summary statistic imputation to discover new height-associated loci.	Height	253,288 European ancestry individuals	336,474 European ancestry individuals	6q26	intergenic	rs73029259-A	0.127743983073261	1E-15		0.013834628	unit increase	NR [9276018] (imputed)	N
1837	chr6	164113761	164113762	rs73029263	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	6q26	LOC102724152	rs73029263-A	0.867248	3E-31		0.0315318	[0.026-0.037] unit increase	NR [13737936] (imputed)	N
1837	chr6	164113761	164113762	rs73029263	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	6q26		rs73029263-?	NR	7E-32				NR [~ 8900000] (imputed)	N
1837	chr6	164113761	164113762	rs73029263	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6q26		rs73029263-?	NR	8E-32		0.0341014	[0.028-0.04] unit increase	Affymetrix [20259828] (imputed)	N
1837	chr6	164113761	164113762	rs73029263	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	6q26	LOC102724152	rs73029263-A	0.868331	9E-11		0.0293316	[0.02-0.039] unit increase	NR [17166351] (imputed)	N
1837	chr6	164113761	164113762	rs73029263	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	6q26	LOC102724152	rs73029263-A	0.868049	4E-6	(men)	0.032069	[0.017-0.047] unit increase	NR [17166351] (imputed)	N
1837	chr6	164120003	164120004	rs142951903	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	6q26		rs142951903-T	NR	1E-23		0.0191	[0.015-0.023] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1837	chr6	164123094	164123095	rs73029270	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	6q26		rs73029270-G	NR	1E-9		0.0181	[0.012-0.024] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
1837	chr6	164126232	164126233	rs73013411	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting insulin	151,013 European ancestry individuals	NA	6q26	QKI	rs73013411-A	0.1282	2E-8		0.018	[0.012-0.024] unit decrease	Affymetrix, Illumina [32635793] (imputed)	N
1837	chr6	164133000	164133001	rs4709746	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6q26	RP1-230L10.1	rs4709746-T	NR	4E-8		0.0227376	[0.015-0.031] unit decrease	Affymetrix [319769] (imputed)	N
1837	chr6	164133000	164133001	rs4709746	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6q26	RP1-230L10.1	rs4709746-T	NR	5E-9		0.0242373	[0.016-0.032] unit increase	Affymetrix [321016] (imputed)	N
1837	chr6	164133000	164133001	rs4709746	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	6q26	NR	rs4709746-T	NR	4E-9		0.0209	[0.014-0.028] unit decrease	Affymetrix [9000000] (imputed)	N
1837	chr6	164133000	164133001	rs4709746	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	6q26	RP1-230L10.1	rs4709746-T	0.13409	3E-11		0.021788007	[0.015-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
1837	chr6	164133000	164133001	rs4709746	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6q26	RP1-230L10.1	rs4709746-T	0.134081	4E-12		0.022824526	[0.016-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
1837	chr6	164133000	164133001	rs4709746	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	6q26	RP1-230L10.1	rs4709746-T	0.134125	1E-12		0.023132678	[0.017-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
1837	chr6	164133000	164133001	rs4709746	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6q26	RP1-230L10.1	rs4709746-T	0.134109	2E-13		0.024020366	[0.018-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
1837	chr6	164133000	164133001	rs4709746	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	6q26	NR	rs4709746-C	0.8687	1E-16		0.0581	[0.044-0.072] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1837	chr6	164133000	164133001	rs4709746	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	6q26	NR	rs4709746-C	0.866	2E-21		0.0565	[0.045-0.068] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1837	chr6	164133000	164133001	rs4709746	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	6q26	QKI	rs4709746-C	0.865986	6E-11		0.0192174	[0.013-0.025] unit increase	Affymetrix [NR] (imputed)	N
1837	chr6	164133000	164133001	rs4709746	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	6q26	NR	rs4709746-T	0.13412599999999997	6E-17		0.00992161	[0.0075-0.0123] unit increase	Affymetrix [16582909] (imputed)	N
1837	chr6	164133000	164133001	rs4709746	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	6q26	NR	rs4709746-T	0.134119	5E-11		0.0117766	[0.0082-0.0154] unit increase	Affymetrix [16585854] (imputed)	N
1837	chr6	164133000	164133001	rs4709746	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	6q26	NR	rs4709746-T	0.13412599999999997	8E-9		0.00756802	[0.0049-0.0103] unit increase	Affymetrix [16582965] (imputed)	N
1837	chr6	164133000	164133001	rs4709746	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	6q26	QKI	rs4709746-C	0.87	4E-6		1.0638298	[1.04-1.1]	Illumina [12557761] (imputed)	N
1837	chr6	164133000	164133001	rs4709746	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6q26		rs4709746-?	NR	9E-28				NR [~ 8900000] (imputed)	N
1837	chr6	164133000	164133001	rs4709746	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	6q26	QKI	rs4709746-C	0.8676	6E-9		1.06	[1.04-1.08]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1837	chr6	164133000	164133001	rs4709746	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6q26		rs4709746-?	NR	5E-32		0.0342644	[0.028-0.04] unit increase	Affymetrix [20259828] (imputed)	N
1837	chr6	164133000	164133001	rs4709746	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	6q26	QKI, C6orf118	rs4709746-C		4E-8		0.19	unit increase	Affymetrix [at least 2696785] (imputed)	N
1837	chr6	164150096	164150097	rs36089990	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	6q26		rs36089990-G	0.12837	1E-9		0.0246326	[0.017-0.033] unit increase	Illumina [13479924] (imputed)	N
1837	chr6	164158406	164158407	rs7758574	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 5 levels	252 European ancestry individuals	NA	6q26		rs7758574-T	NR	9E-6		0.13438	[0.076-0.192] unit decrease	Illumina [NR] (imputed)	N
1837	chr6	164170997	164170998	rs1885957	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H measurement	252 European ancestry individuals	NA	6q26		rs1885957-G	NR	7E-6		1.948	[1.12-2.78] unit decrease	Illumina [NR] (imputed)	N
1837	chr6	164173966	164173967	rs6932209	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	6q26		rs6932209-T	0.270003	5E-10		0.014089	[0.0097-0.0185] unit increase	Illumina [13479295] (imputed)	N
1837	chr6	164173966	164173967	rs6932209	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	6q26	QKI, C6orf118	rs6932209-?	NR	1E-8		0.018131109	[0.012-0.024] unit increase	Illumina [27896057] (imputed)	N
1837	chr6	164176265	164176266	rs6928576	30120429	Schlauch KA	2018-08-17	Int J Obes (Lond)	Single-nucleotide polymorphisms in a cohort of significantly obese women without cardiometabolic diseases.	Obesity without metabolic disease	38 European ancestry cases, 32 European ancestry non-obese controls	NA	6q26		rs6928576-?	NR	1E-6		4.5587687		Affymetrix [710007]	N
1837	chr6	164176455	164176456	rs6902153	30120429	Schlauch KA	2018-08-17	Int J Obes (Lond)	Single-nucleotide polymorphisms in a cohort of significantly obese women without cardiometabolic diseases.	Obesity without metabolic disease	38 European ancestry cases, 32 European ancestry non-obese controls	NA	6q26		rs6902153-?	NR	1E-6		4.5587687		Affymetrix [710007]	N
1837	chr6	164177320	164177321	rs10945918	30120429	Schlauch KA	2018-08-17	Int J Obes (Lond)	Single-nucleotide polymorphisms in a cohort of significantly obese women without cardiometabolic diseases.	Obesity without metabolic disease	38 European ancestry cases, 32 European ancestry non-obese controls	NA	6q26		rs10945918-?	NR	1E-6		4.5587687		Affymetrix [710007]	N
1837	chr6	164186676	164186677	rs10945919	18615156	Liu C	2008-07-10	Mol Med	Genome-wide association scan identifies candidate polymorphisms associated with differential response to anti-TNF treatment in rheumatoid arthritis.	Response to TNF antagonist treatment	89 European ancestry cases	NA	6q26	QKI	rs10945919-G	0.32	3E-7				Illumina [283348]	N
1837	chr6	164200020	164200021	rs9456883	28283553	Srinivasan L	2017-03-10	Arch Dis Child Fetal Neonatal Ed	Genome-wide association study of sepsis in extremely premature infants.	Sepsis in extremely premature infants	155 European ancestry cases, 190 non-European ancestry cases, 184 European ancestry controls, 222 non-European ancestry controls	NA	6q26	intergenic	rs9456883-?	NR	2E-6				Illumina [7200000] (imputed)	N
1838	chr6	164246530	164246531	rs9365618	33190678	Ho YYW	2020-10-01	Twin Res Hum Genet	Comparison of Genome-Wide Association Scans for Quantitative and Observational Measures of Human Hair Curvature.	Hair curvature (observational)	2,225 European ancestry individuals	NA	6q26	NR	rs9365618-?		9E-6		0.0987	[0.054-0.144] unit increase	Illumina [7533529] (imputed)	N
1838	chr6	164249853	164249854	rs880095	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	6q26	QKI	rs880095-?		5E-12				Affymetrix, Illumina [NR] (imputed)	N
1838	chr6	164295150	164295151	rs4709783	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental longevity (mother's age at death)	52,776 middle-aged British individuals	NA	6q26	NR	rs4709783-?	NR	5E-8		0.028085	[0.018-0.038] unit increase	Affymetrix [9658292] (imputed)	N
1838	chr6	164325153	164325154	rs145965162	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6q26	NR	rs145965162-G	0.01045	3E-8	(DPYSL2)	0.2965	NR unit increase	Illumina [1671387] (imputed)	N
1838	chr6	164343725	164343726	rs12529314	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Neurofibrillary tangles	up to 4,707 individuals	NA	6q26	intergenic	rs12529314-T	0.1725	4E-6	(Ordinal I)	0.2433	[0.14-0.35] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1838	chr6	164343774	164343775	rs9356171	30552108	Kawabata Y	2018-12-14	Diabetes	A genome-Wide Association Study Confirming a Strong Effect of HLA and Identifying Variants in CSAD/lnc-ITGB7-1 on Chromosome 12q13.13 Associated with Susceptibility to Fulminant Type 1 Diabetes.	Fulminant type 1 diabetes	257 Japanese ancestry cases, 419 Japanese ancestry controls	NA	6q26	C6orf118	rs9356171-A	NR	9E-6		1.9	[1.43-2.52]	Affymetrix [426851] (imputed)	N
1838	chr6	164343774	164343775	rs9356171	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	6q26	LOC728275, QKI	rs9356171-?	0.5466	7E-6		2.3255813	[1.59-3.33]	Illumina [1556551]	N
1838	chr6	164362832	164362833	rs4709026	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (unclassified genus belonging to family Ruminococcaceae)	1,068 Japanese ancestry individuals	NA	6q26	intergenic	rs4709026-T	0.17	8E-6		0.0717	[0.041-0.103] unit decrease	Illumina [6380737] (imputed)	N
1839	chr6	164389164	164389165	rs593254	27490719	Bacelis J	2016-08-04	PLoS One	Literature-Informed Analysis of a Genome-Wide Association Study of Gestational Age in Norwegian Women and Children Suggests Involvement of Inflammatory Pathways.	Gestational age at birth in labor-initiated deliveries (maternal effect)	1,407 Norwegian ancestry mothers	NA	6q26	intergenic	rs593254-A		3E-6				NR [525577]	N
1839	chr6	164422872	164422873	rs369498508	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	6q26	intergenic	rs369498508-C	0.364607	4E-10		0.0137627	[0.0095-0.0181] unit increase	NR [16516521] (imputed)	N
1839	chr6	164452104	164452105	rs62437588	25839716	Ng E	2015-04-02	Environ Res	Genome-wide association study of plasma levels of polychlorinated biphenyls disclose an association with the CYP2B6 gene in a population-based sample.	Polychlorinated biphenyl levels	922 European ancestry individuals	NA	6q26	NR	rs62437588-?		8E-7	(PCB99)	0.92	[0.55-1.29] unit decrease	Illumina [8736858] (imputed)	N
1839	chr6	164452104	164452105	rs62437588	25839716	Ng E	2015-04-02	Environ Res	Genome-wide association study of plasma levels of polychlorinated biphenyls disclose an association with the CYP2B6 gene in a population-based sample.	Polychlorinated biphenyl levels	922 European ancestry individuals	NA	6q26	NR	rs62437588-?		7E-7	(PCB153)	0.94	[0.57-1.31] unit decrease	Illumina [8736858] (imputed)	N
1839	chr6	164452104	164452105	rs62437588	25839716	Ng E	2015-04-02	Environ Res	Genome-wide association study of plasma levels of polychlorinated biphenyls disclose an association with the CYP2B6 gene in a population-based sample.	Polychlorinated biphenyl levels	922 European ancestry individuals	NA	6q26	NR	rs62437588-?		4E-8	(PCB105)	1.03	[0.66-1.4] unit decrease	Illumina [8736858] (imputed)	N
1839	chr6	164452104	164452105	rs62437588	25839716	Ng E	2015-04-02	Environ Res	Genome-wide association study of plasma levels of polychlorinated biphenyls disclose an association with the CYP2B6 gene in a population-based sample.	Polychlorinated biphenyl levels	922 European ancestry individuals	NA	6q26	NR	rs62437588-?		2E-7	(PCB138)	0.96	[0.61-1.31] unit decrease	Illumina [8736858] (imputed)	N
1839	chr6	164452104	164452105	rs62437588	25839716	Ng E	2015-04-02	Environ Res	Genome-wide association study of plasma levels of polychlorinated biphenyls disclose an association with the CYP2B6 gene in a population-based sample.	Polychlorinated biphenyl levels	922 European ancestry individuals	NA	6q26	NR	rs62437588-?		1E-7	(PCB118)	1.02	[0.65-1.39] unit decrease	Illumina [8736858] (imputed)	N
1839	chr6	164458286	164458287	rs2070286	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	153,512 East Asian ancestry individuals	NA	6q26		rs2070286-C	0.408613	2E-9		0.0191329	[0.013-0.025] unit increase	Illumina [13479135] (imputed)	N
1839	chr6	164458814	164458818	rs10539551	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	6q26		rs10539551-C	0.400728	2E-23		0.0362601	[0.029-0.043] unit decrease	Illumina [13476266] (imputed)	N
1839	chr6	164458814	164458818	rs10539551	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	6q26		rs10539551-C	0.400553	2E-22		0.0358079	[0.029-0.043] unit decrease	Illumina [13476299] (imputed)	N
1839	chr6	164459374	164459375	rs4709818	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Red blood cell count	108,794 Japanese ancestry individuals	NA	6q26	QKI, MEAT6	rs4709818-?	NR	3E-9		0.0258	[0.017-0.034] unit increase novel	Illumina [6108953] (imputed)	N
1839	chr6	164459374	164459375	rs4709818	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular volume	108,256 Japanese ancestry individuals	NA	6q26	QKI, MEAT6	rs4709818-?	NR	3E-19		0.03891	[0.03-0.047] unit decrease novel	Illumina [6108953] (imputed)	N
1839	chr6	164459374	164459375	rs4709818	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin	108,054 Japanese ancestry individuals	NA	6q26	QKI, MEAT6	rs4709818-?	NR	2E-19		0.03911	[0.031-0.048] unit decrease novel	Illumina [6108953] (imputed)	N
1839	chr6	164461444	164461444	rs10683106	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	6q26		rs10683106-TTGCAC	NR	5E-35		0.0238	[0.02-0.028] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1839	chr6	164461444	164461444	rs10683106	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	6q26		rs10683106-TTGCAC	NR	6E-71		0.0358	[0.032-0.04] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
1839	chr6	164461444	164461444	rs10683106	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	6q26		rs10683106-TTGCAC	NR	1E-68		0.0353	[0.031-0.039] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
1839	chr6	164461444	164461444	rs10683106	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	6q26		rs10683106-TTGCAC	0.407509	5E-78		0.04218571	[0.038-0.047] unit decrease	Affymetrix [93095623] (imputed)	N
1839	chr6	164463354	164463355	rs4709819	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	119,629 East Asian ancestry individuals	NA	6q26	NR	rs4709819-G	0.594768	1E-18		0.036653	[0.029-0.045] SD units increase	Affymetrix, Illumina [16286228] (imputed)	N
1839	chr6	164463354	164463355	rs4709819	31624269	Terao C	2019-10-17	Nat Commun	GWAS of mosaic loss of chromosome Y highlights genetic effects on blood cell differentiation.	Mosaic loss of chromosome Y (Y chromosome dosage)	95,380 Japanese men	NA	6q26	LOC102724152, MEAT6	rs4709819-A	0.41	1E-30		0.049	NR unit increase	Illumina [9591901] (imputed)	N
1839	chr6	164463354	164463355	rs4709819	31624269	Terao C	2019-10-17	Nat Commun	GWAS of mosaic loss of chromosome Y highlights genetic effects on blood cell differentiation.	Mosaic loss of chromosome Y (Y chromosome dosage)	205,011 men	NA	6q26	LOC102724152, MEAT6	rs4709819-G	0.59	3E-83		0.023	unit increase	NR [NR]	N
1839	chr6	164463354	164463355	rs4709819	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	6q26	intergenic	rs4709819-A	0.4063	2E-29		0.04207929	[0.035-0.049] unit increase	Affymetrix [~ 2500000] (imputed)	N
1839	chr6	164463354	164463355	rs4709819	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	6q26	intergenic	rs4709819-A	0.4063	2E-17		0.03171382	[0.024-0.039] unit increase	Affymetrix [~ 2500000] (imputed)	N
1839	chr6	164463571	164463572	rs4709820	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6q26		rs4709820-T	0.592	7E-18				Affymetrix [10369434] (imputed)	N
1839	chr6	164463571	164463572	rs4709820	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	6q26		rs4709820-?	NR	5E-70				NR [~ 8900000] (imputed)	N
1839	chr6	164471823	164471824	rs454187	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	150,708 East Asian ancestry individuals	NA	6q26	NR	rs454187-G	0.587085	9E-13		0.02659	[0.019-0.034] SD units decrease	Affymetrix, Illumina [16709798] (imputed)	N
1839	chr6	164473820	164473821	rs415182	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	121,047 East Asian ancestry individuals	NA	6q26	NR	rs415182-C	0.589145	1E-18		0.036697	[0.029-0.045] SD units increase	Affymetrix, Illumina [16286195] (imputed)	N
1839	chr6	164477025	164477026	rs9356181	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular volume	up to 29,946 European ancestry individuals, up to 6150 African American individuals, 15,074 East Asian individuals.	16,389 individuals of European and African American ancestry.	6q26	NR	rs9356181-?	NR	6E-7				NR [2500000] (imputed)	N
1839	chr6	164478387	164478388	rs381500	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	6q26		rs381500-A	NR	3E-47		0.025	[0.022-0.028] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
1839	chr6	164478387	164478388	rs381500	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	6q26		rs381500-C	0.549	3E-50		0.16	[0.14-0.18] % increase	Affymetrix [NR] (imputed)	N
1839	chr6	164478387	164478388	rs381500	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	6q26		rs381500-A	0.452051	1E-48		0.032030344	[0.028-0.036] unit increase	Affymetrix [93095623] (imputed)	N
1839	chr6	164478387	164478388	rs381500	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	6q26		rs381500-A	0.452003	3E-72		0.040412076	[0.036-0.045] unit increase	Affymetrix [93095623] (imputed)	N
1839	chr6	164478387	164478388	rs381500	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	6q26		rs381500-A	0.452018	3E-42		0.03064786	[0.026-0.035] unit increase	Affymetrix [93095623] (imputed)	N
1839	chr6	164478387	164478388	rs381500	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6q26		rs381500-A	0.452048	2E-59		0.03565187	[0.031-0.04] unit decrease	Affymetrix [93095623] (imputed)	N
1839	chr6	164478387	164478388	rs381500	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	6q26		rs381500-A	0.452019	9E-72		0.0378911	[0.034-0.042] unit decrease	Affymetrix [93095623] (imputed)	N
1839	chr6	164478387	164478388	rs381500	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	6q26		rs381500-A	0.452049	6E-69		0.037422474	[0.033-0.042] unit decrease	Affymetrix [93095623] (imputed)	N
1839	chr6	164478387	164478388	rs381500	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q26	NR	rs381500-A	0.440819	4E-76				Affymetrix, Illumina [24332387] (imputed)	N
1839	chr6	164478387	164478388	rs381500	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	6q26	NR	rs381500-A	0.453833	2E-67		0.032019	[0.028-0.036] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
1839	chr6	164478387	164478388	rs381500	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q26	NR	rs381500-A	0.44134	2E-64				Affymetrix, Illumina [24588908] (imputed)	N
1839	chr6	164478387	164478388	rs381500	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	6q26	NR	rs381500-A	0.454053	6E-63		0.030693	[0.027-0.034] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1839	chr6	164478387	164478388	rs381500	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q26	NR	rs381500-A	0.44248	3E-109				Affymetrix, Illumina [24246363] (imputed)	N
1839	chr6	164478387	164478388	rs381500	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	6q26	NR	rs381500-A	0.453819	8E-96		0.037469	[0.034-0.041] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1839	chr6	164478387	164478388	rs381500	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q26	NR	rs381500-A	0.440343	2E-94				Affymetrix, Illumina [20825802] (imputed)	N
1839	chr6	164478387	164478388	rs381500	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	6q26	NR	rs381500-A	0.452763	3E-82		0.036795	[0.033-0.041] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
1839	chr6	164478387	164478388	rs381500	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	6q26		rs381500-?	NR	4E-55				NR [~ 8900000] (imputed)	N
1839	chr6	164478387	164478388	rs381500	28346444	Wright DJ	2017-03-27	Nat Genet	Genetic variants associated with mosaic Y chromosome loss highlight cell cycle genes and overlap with cancer susceptibility.	Mosaic loss of chromosome Y (Y chromosome dosage)	67,034 European ancestry men	8,715 European ancestry men, 9,793 men	6q26	QKI	rs381500-C	0.55	5E-16		0.002	NR unit decrease	Affymetrix [at least 641018] (imputed)	N
1839	chr6	164478387	164478388	rs381500	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	6q26	intergenic	rs381500-A	0.452	1E-14		0.02755191	[0.021-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
1839	chr6	164478387	164478388	rs381500	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	6q26	intergenic	rs381500-A	0.452	1E-19		0.03208978	[0.025-0.039] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1839	chr6	164478387	164478388	rs381500	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	6q26	intergenic	rs381500-A	0.4521	2E-22		0.03468043	[0.028-0.042] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1840	chr6	164522971	164522972	rs55958453	32690583	Cheng B	2020-07-20	G3 (Bethesda)	Genome-Wide Association Analysis Identified ANXA1 Associated with Shoulder Impingement Syndrome in UK Biobank Samples.	Shoulder impingement syndrome	7,252 European ancestry individuals	NA	6q27		rs55958453-A	NR	9E-6		1.18166	[1.11-1.26] unit increase	Affymetrix [825927] (imputed)	N
1840	chr6	164528866	164528867	rs206705	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	6q27	RP1-155D22.1	rs206705-T	0.6938	3E-11		0.4797	[0.34-0.62] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1840	chr6	164532058	164532059	rs206708	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	6q27	RP1-155D22.1	rs206708-A	0.7	2E-11		0.47	[0.33-0.61] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1840	chr6	164605712	164605713	rs807897	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	6q27	LOC102724152, MEAT6	rs807897-?	NR	4E-12		0.451	[0.32-0.59] unit decrease	Affymetrix [11100000] (imputed)	N
1840	chr6	164613456	164613457	rs1034447	27363682	Mitchell JS	2016-07-01	Nat Commun	Genome-wide association study identifies multiple susceptibility loci for multiple myeloma.	Multiple myeloma	7,319 European ancestry cases, 234,385 European ancestry controls	2,547 European ancestry cases, 4,803 European ancestry controls	6q27	Intergenic	rs1034447-T	0.131	5E-7		1.13	[NR]	Illumina [at least 7182761] (imputed)	N
1841	chr6	164657736	164657737	rs9364726	30217971	Ho KWD	2018-09-14	Transl Psychiatry	Genome-wide association study of seasonal affective disorder.	Seasonality and depression	1,380 European ancestry cases, 2,937 European ancestry controls	NA	6q27	QKI, MEAT6	rs9364726-A		1E-6		0.567	[0.34-0.79] unit decrease	Affymetrix, Illumina [8153767] (imputed)	N
1842	chr6	164790025	164790026	rs10945984	33232274	Mohammadnejad A	2020-11-24	Aging (Albany NY)	Generalized correlation coefficient for genome-wide association analysis of cognitive ability in twins.	Cognitive function (generalized correlation coefficient)	278 Chinese ancestry dizygotic twins	NA	6q27	NR	rs10945984-?	NR	3E-7			[NR]	Illumina [5432814] (imputed)	N
1843	chr6	164900597	164900598	rs4709845	20516156	Lewis CM	2010-06-01	Am J Psychiatry	Genome-wide association study of major recurrent depression in the U.K. population.	Major depressive disorder	1,636 European ancestry cases, 1,594 European ancestry controls	1,418 European ancestry cases, 1,918 European ancestry controls	6q27	LOC728275	rs4709845-?	0.85	9E-6		1.21	[NR]	Illumina [471747]	N
1843	chr6	164928140	164928141	rs9347865	26821981	Koga AT	2016-01-28	J Neural Transm (Vienna)	Genome-wide association analysis to predict optimal antipsychotic dosage in schizophrenia: a pilot study.	antipsychotic drug dosage in schizophrenia or schizoaffective disorder	up to 39 European ancestry schizophrenia cases, up to 40 European ancestry schizoaffective cases	NA	6q27	NR	rs9347865-A	NR	1E-6	(DDD)	0.2568	[NR] unit increase	Illumina [1190033]	N
1843	chr6	164938718	164938719	rs1391235	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6q27	PDE10A	rs1391235-?	NR	4E-6	(5-hydroxyindoleacetic acid)	0.17909914	[0.1-0.26] unit increase	Affymetrix [at least 2500000] (imputed)	N
1843	chr6	164948301	164948302	rs9459130	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	6q27	NR	rs9459130-?	NR	3E-14				Affymetrix [NR]	N
1843	chr6	164975013	164975014	rs6919939	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	6q27	NR	rs6919939-A	NR	7E-6		1.05	[NR]	Illumina [7158791] (imputed)	N
1844	chr6	165075209	165075210	rs4479913	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	6q27	NR	rs4479913-?	NR	6E-9		1.06162	[1.04-1.08]	Affymetrix, Illumina [12447948] (imputed)	N
1844	chr6	165075209	165075210	rs4479913	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls	NA	6q27	NR	rs4479913-?	NR	2E-10		1.12		Affymetrix, Illumina [9938587] (imputed)	N
1844	chr6	165075600	165075601	rs4479915	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	6q27	C6ORF118	rs4479915-G	NR	5E-9	(Chinese)	1.1415524	[1.1-1.19]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1844	chr6	165077748	165077749	rs9347896	32959083	Adewuyi EO	2020-09-21	Hum Genet	Genetic analysis of endometriosis and depression identifies shared loci and implicates causal links with gastric mucosa abnormality.	Endometriosis or depression (pleiotropy)	17,054 endometriosis cases, 170,756 European ancestry depression cases, 191,858 controls, 329,443 European ancestry controls	NA	6q27	NR	rs9347896-A		1E-8		0.0281251	[0.018-0.038] unit increase	NR [6694342]	N
1844	chr6	165080508	165080509	rs55776777	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	6q27	NR	rs55776777-C	0.245	2E-8		0.00708589	[0.0046-0.0095] unit increase	NR [9732723] (imputed)	N
1844	chr6	165117328	165117329	rs9364755	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Major depressive disorder (MTAG)	at least 170,756 European ancestry cases, at least 329,443 European ancestry controls	NA	6q27	NR	rs9364755-A	0.7738	1E-9		0.029666446	[0.02-0.039] unit decrease	NR [NR]	N
1844	chr6	165121843	165121844	rs2029865	30718901	Howard DM	2019-02-04	Nat Neurosci	Genome-wide meta-analysis of depression identifies 102 independent variants and highlights the importance of the prefrontal brain regions.	Depression	118,811 European ancestry cases, 327,427 European ancestry controls, 127,552 cases, 233,763 controls	414,055 European ancestry cases, 892,299 European ancestry controls	6q27	NR	rs2029865-T	0.5466	4E-17		1.01833	[1.01-1.02]	NR [8098588] (imputed)	N
1844	chr6	165129877	165129878	rs9365760	31926635	Coleman JRI	2019-11-01	Biol Psychiatry	The Genetics of the Mood Disorder Spectrum: Genome-wide Association Analyses of More Than 185,000 Cases and 439,000 Controls.	Bipolar disorder or major depressive disorder	164,933 European ancestry major depressive disorder cases, 20,352 European ancestry bipolar disorder cases, 439,741 European ancestry controls	NA	6q27	NR	rs9365760-?	NR	2E-6				NR [NR] (imputed)	N
1845	chr6	165153613	165153614	rs10806805	27479909	Hyde CL	2016-08-01	Nat Genet	Identification of 15 genetic loci associated with risk of major depression in individuals of European descent.	Major depressive disorder	84,847 European ancestry cases, 241,266 European ancestry controls	45,773 European ancestry cases, 106,354 European ancestry controls	6q27	C6orf118	rs10806805-G	0.539686	6E-6		0.0266	[0.015-0.038] unit increase	Illumina [1220000] (imputed)	N
1845	chr6	165157683	165157684	rs9347032	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Photic sneeze reflex	32,446 European ancestry cases, 67,249 European ancestry controls	NA	6q27	C6orf118	rs9347032-?	NR	3E-10		1.069	[1.047-1.091]	Illumina [13729857] (imputed)	N
1845	chr6	165178876	165178877	rs2322702	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	6q27		rs2322702-?	NR	2E-10		0.0174	unit decrease	NR [NR]	N
1845	chr6	165186962	165186963	rs9365769	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	6q27		rs9365769-?	NR	6E-9				NR [~ 8900000] (imputed)	N
1845	chr6	165191636	165191637	rs79052920	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6q27	NR	rs79052920-C	0.01045	3E-11	(ACLY)	0.362	NR unit increase	Illumina [1671387] (imputed)	N
1845	chr6	165195546	165195547	rs9347926	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	6q27	C6orf118	rs9347926-A	0.4407	1E-13		1.0281		Affymetrix [11880941] (imputed)	N
1845	chr6	165195546	165195547	rs9347926	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	6q27	C6orf118	rs9347926-A	0.4407	1E-13		1.0267515		Affymetrix [11880941] (imputed)	N
1846	chr6	165295960	165295961	rs9365798	28355295	Hong EP	2017-03-29	PLoS One	Risk prediction of pulmonary tuberculosis using genetic and conventional risk factors in adult Korean population.	Tuberculosis	467 Korean ancestry cases, 1,313 Korean ancestry controls	179 Korean ancestry cases, 500 Korean ancestry controls	6q27	C6orf118	rs9365798-C	NR	2E-6	(dominant model)	1.59	[1.32-1.92]	Affymetrix [~ 4750000] (imputed)	N
1846	chr6	165326878	165326879	rs12176440	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Pars opercularis volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	6q27	NR	rs12176440-?		3E-6				Illumina [4322238] (imputed)	N
1846	chr6	165341168	165341169	rs6455972	31123309	Rayner C	2019-05-23	Transl Psychiatry	A genome-wide association meta-analysis of prognostic outcomes following cognitive behavioural therapy in individuals with anxiety and depressive disorders.	Response to cognitive-behavioural therapy in anxiety disorder	972 European ancestry adult cases	NA	6q27	intergenic	rs6455972-T	0.17	7E-6		0.26	[0.14-0.38] unit decrease	Illumina [at least 4710000] (imputed)	N
1847	chr6	165413894	165413895	rs9356334	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	6q27	NR	rs9356334-?	NR	7E-7	(AA)	87.33	[83.21-91.45]	Illumina [905956]	N
1847	chr6	165419808	165419809	rs6455984	34177598	Wolking S	2021-06-09	Front Pharmacol	Role of Common Genetic Variants for Drug-Resistance to Specific Anti-Seizure Medications.	Response to levetiracetam in focal epilepsy	258 European ancestry cases, 678 European ancestry controls	NA			rs6455984-?	NR	3E-6				Illumina [NR] (imputed)	N
1847	chr6	165445122	165445123	rs227479	33594131	Donati G	2021-02-16	Sci Rep	Evidence for specificity of polygenic contributions to attainment in English, maths and science during adolescence.	Academic attainment (maths)	6,017 European ancestry adolescents	NA	6q27	NR	rs227479-G	NR	3E-6		0.088	[0.051-0.125] unit increase	Illumina [6319684] (imputed)	N
1847	chr6	165457846	165457847	rs35833993	33491795	Timmer T	2021-01-25	Vox Sang	Genetic determinants of ferritin, haemoglobin levels and haemoglobin trajectories: results from Donor InSight.	Declining hemoglobin trajectory in blood donors	1,044 European ancestry cases, 783 European ancestry controls	NA	6q27	C6orf118	rs35833993-T	0.182	1E-5		0.67	[0.56-0.80]	Affymetrix [7435577] (imputed)	N
1847	chr6	165466350	165466351	rs227458	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue adjusted for BMI	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	6q27	C6orf118	rs227458-C	0.87	3E-6	(men)			Affymetrix, Illumina [2500000] (imputed)	N
1847	chr6	165469640	165469641	rs227457	29253858	Bohman A	2017-12-18	PLoS One	A family-based genome-wide association study of chronic rhinosinusitis with nasal polyps implicates several genes in the disease pathogenesis.	Chronic rhinosinusitis with nasal polyps	406 European ancestry cases, 376 European ancestry controls (first degree relatives)	NA	6q27	NR	rs227457-G	NR	2E-6				Illumina [233409]	N
1847	chr6	165511470	165511471	rs117482282	31264924	Meng W	2019-07-02	Ophthalmic Genet	A genome-wide association study implicates that the TTC39C gene is associated with diabetic maculopathy with decreased visual acuity.	Diabetic maculopathy in type 2 diabetes	1,240 Scottish ancestry cases, 1,374 Scottish ancestry controls	NA	6q27	NR	rs117482282-?	NR	4E-7		3.079	[1.991-4.762]	Affymetrix, Illumina [6717712] (imputed)	N
1847	chr6	165520198	165520199	rs9457038	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6q27	PDE10A	rs9457038-?	NR	6E-6	(pantothenic acid)	0.34281704	[0.19-0.49] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1848	chr6	165565894	165565895	rs2675724	24824216	Myers RA	2014-05-13	Hum Mol Genet	Genome-wide interaction studies reveal sex-specific asthma risk alleles.	Asthma (sex interaction)	1,052 European ancestry male cases, 1,019 European ancestry female cases, 709 European ancestry male controls, 826 European ancestry female controls, 675 African American/African Caribbean male cases, 837 African American/African Caribbean female cases, 577 African American/African Caribbean male controls, 926 African American/African Caribbean female controls, 926 Latino male cases, 710 Latino female cases, 410 Latino male controls, 382 Latino female controls	NA	6q27	C6orf118	rs2675724-A	0.62	2E-7	(Latino, female)	1.44	[1.26-1.66]	Affymetrix, Illumina [~ 2100000] (imputed)	N
1848	chr6	165581005	165581006	rs506879	27151647	Chen G	2016-05-05	Addict Biol	An association study revealed substantial effects of dominance, epistasis and substance dependence co-morbidity on alcohol dependence symptom count.	Alcohol dependence symptom count	2,605 European ancestry individuals, 1,233 African American individuals	NA	6q27	C6orf118	rs506879-?		8E-7	(dominant)	0.289	[0.17-0.4] unit decrease	Illumina [974863]	N
1848	chr6	165589713	165589714	rs1661404	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Short-term memory (digit-span task)	2,591 European ancestry individuals	NA	6q27	Intergenic	rs1661404-C	0.634975714	4E-6		0.135071	[0.078-0.192] unit increase	Illumina [6952813] (imputed)	N
1849	chr6	165706472	165706473	rs1105228	25742292	Aschebrook-Kilfoy B	2015-03-05	PLoS One	Genome-wide association study of parity in Bangladeshi women.	Number of pregnancies	1,686 Bangladeshi women	NA	6q27	NR	rs1105228-?		2E-6		0.28	unit increase	Illumina [1211988] (imputed)	N
1849	chr6	165706472	165706473	rs1105228	25742292	Aschebrook-Kilfoy B	2015-03-05	PLoS One	Genome-wide association study of parity in Bangladeshi women.	Number of children	1,686 Bangladeshi women	NA	6q27	NR	rs1105228-?		2E-6		0.29	unit increase	Illumina [1211988] (imputed)	N
1849	chr6	165744318	165744319	rs16897676	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	6q27	NR	rs16897676-?	NR	2E-6				Affymetrix [NR]	N
1850	chr6	165846886	165846887	rs220826	29251981	Weafer J	2017-12-01	Exp Clin Psychopharmacol	Hierarchical investigation of genetic influences on response inhibition in healthy young adults.	Inhibitory control	934 European ancestry individuals	NA	6q27	PDE10A	rs220818-G	0.258	5E-6				Illumina [4873750] (imputed)	N
1850	chr6	165889030	165889031	rs221721	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6q27		rs221721-?	NR	7E-18				NR [~ 8900000] (imputed)	N
1850	chr6	165924969	165924970	rs611909	29678681	Matana A	2018-04-18	Genomics	Genome-wide meta-analysis identifies novel gender specific loci associated with thyroid antibodies level in Croatians.	Plasma anti-thyroglobulin and anti-thyroid peroxidase levels (bivariate analysis)	up to 1,596 Croatian ancestry women, up to 1,033 Croatian ancestry men	NA	6q27	PDE10A	rs611909-?	NR	3E-6		0.012	[0.007-0.017] unit increase	Illumina [5527232] (imputed)	N
1850	chr6	165927100	165927101	rs515579	29678681	Matana A	2018-04-18	Genomics	Genome-wide meta-analysis identifies novel gender specific loci associated with thyroid antibodies level in Croatians.	Plasma anti-thyroglobulin and anti-thyroid peroxidase levels (bivariate analysis)	up to 1,596 Croatian ancestry women, up to 1,033 Croatian ancestry men	NA	6q27	PDE10A	rs515579-?	NR	3E-6	(women)	0.021	[0.012-0.03] unit increase	Illumina [5527232] (imputed)	N
1850	chr6	165927536	165927537	rs77350958	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental longevity (combined parental age at death)	45,627 middle-aged British individuals	NA	6q27	NR	rs77350958-?	NR	6E-6		0.11094	[0.063-0.159] unit decrease	Affymetrix [9658292] (imputed)	N
1850	chr6	165935420	165935421	rs519595	22890011	Frazier-Wood AC	2012-08-09	Pharmacogenet Genomics	Genome-wide association study indicates variants associated with insulin signaling and inflammation mediate lipoprotein responses to fenofibrate.	Response to fenofibrate	817 European ancestry individuals	NA	6q27	PDE10	rs519595-G	NR	5E-6	(Large LDL)	0.58	[0.33-0.83] unit decrease	Affymetrix [~ 2543887] (imputed)	N
1850	chr6	165935420	165935421	rs519595	22890011	Frazier-Wood AC	2012-08-09	Pharmacogenet Genomics	Genome-wide association study indicates variants associated with insulin signaling and inflammation mediate lipoprotein responses to fenofibrate.	Response to fenofibrate	817 European ancestry individuals	NA	6q27	PDE10	rs519595-G	NR	2E-6	(LDL diameter)	0.6	[0.36-0.84] unit decrease	Affymetrix [~ 2543887] (imputed)	N
1851	chr6	165940251	165940252	rs480268	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6q27	NR	rs480268-C	0.173	1E-6	(IFNgamma_STAT1_of_Monocytes)			Illumina [5084123] (imputed)	N
1851	chr6	165953126	165953127	rs545099	24951543	Liao J	2014-06-20	Hum Mol Genet	Meta-analysis of genome-wide association studies in multiethnic Asians identifies two loci for age-related nuclear cataract.	Age-related nuclear cataracts	2,369 Malay ancestry individuals, 2,200 Indian ancestry individuals, 2,571 Chinese ancestry individuals	NA	6q27	PDE10A	rs545099-C	NR	9E-6	(Fixed effect)	0.2	[0.12-0.28] unit increase	Illumina [4736131] (imputed)	N
1851	chr6	165972138	165972139	rs6914479	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	6q27		rs6914479-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1851	chr6	165973966	165973968	rs141198485	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	6q27	PDE10A	rs141198485-A	0.01	4E-6		0.1849	[0.11-0.26] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1851	chr6	166014222	166014223	rs9457107	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	6q27	PDE10A	rs9457107-C	0.398929	3E-7		0.013759	[0.0085-0.019] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1851	chr6	166015430	166015431	rs7762160	20585324	Dick DM	2010-06-27	Mol Psychiatry	Genome-wide association study of conduct disorder symptomatology.	Conduct disorder (symptom count)	872 European, African American and other ancestry substance dependence cases, 3,091 European, African American and other ancestry controls	NA	6q27	PDE10A	rs7762160-C	0.365	1E-6		0.07	[NR] unit increase	Illumina [948658]	N
1851	chr6	166016799	166016800	rs12206610	27020472	Fan Q	2016-03-29	Nat Commun	Meta-analysis of gene-environment-wide association scans accounting for education level identifies additional loci for refractive error.	Spherical equivalent (joint analysis main effects and education interaction)	2,604 Erasmus Rucphen population isolate individuals, 456 Sardinian population isolate individuals, 36,976 European ancestry individuals, 5,971 East Asian ancestry individuals, 2,256 Malay ancestry individuals, 2,088 Indian ancestry individuals	NA	6q27	PDE10A	rs12206610-C	0.9	9E-9	(Asian ancestry)			Affymetrix, Illumina [up to 7331415] (imputed)	N
1851	chr6	166026790	166026791	rs2983496	28843169	Neumann A	2017-08-12	Psychoneuroendocrinology	The low single nucleotide polymorphism heritability of plasma and saliva cortisol levels.	Cortisol levels (saliva)	7,703 European ancestry individuals	NA	6q27	PDE10A	rs2983496-A	0.11	8E-6		0.11	[0.071-0.149] unit increase	Illumina, Perlegen [2156702] (imputed)	N
1851	chr6	166038535	166038536	rs59148743	32769997	Zhou W	2020-08-07	Nat Commun	GWAS of thyroid stimulating hormone highlights pleiotropic effects and inverse association with thyroid cancer.	Thyroid stimulating hormone levels	119,715 European ancestry individuals	NA	6q27	PDE10A	rs59148743-C	0.298514746711367	6E-22		0.0493	[0.039-0.059] SD decrease	Illumina [22400000] (imputed)	N
1851	chr6	166043861	166043862	rs3008034	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	6q27		rs3008034-C	NR	3E-10		0.0597	[0.041-0.078] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1851	chr6	166043861	166043862	rs3008034	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	6q27	PDE10A	rs3008034-C	0.305208	2E-10		0.06304378	[0.044-0.082] unit decrease	Affymetrix [7288503] (imputed)	N
1851	chr6	166043861	166043862	rs3008034	28333968	Nielsen TR	2017-03-23	PLoS One	A genome-wide association study of thyroid stimulating hormone and free thyroxine in Danish children and adolescents.	Plasma thyroid-stimulating hormone levels	1,680 Danish ancestry children and adolescents	2,129 Danish ancestry children and adolescents	6q27	PDE10A	rs3008034-?	NR	6E-10		0.238	[0.3132-0.1626] unit decrease	Illumina [8508717] (imputed)	N
1851	chr6	166043861	166043862	rs3008034	25743335	Taylor PN	2015-03-06	Nat Commun	Whole-genome sequence-based analysis of thyroid function.	Thyroid stimulating hormone levels	2,287 European ancestry whole-genome sequenced individuals, 14,048 European ancestry individuals	NA	6q27	PDE10A	rs3008034-C	0.312	5E-26		0.131	[0.11-0.15] unit decrease	Illumina [at least 9558836] (imputed)	N
1851	chr6	166043958	166043959	rs2983511	32769997	Zhou W	2020-08-07	Nat Commun	GWAS of thyroid stimulating hormone highlights pleiotropic effects and inverse association with thyroid cancer.	Thyroid stimulating hormone levels	119,715 European ancestry individuals	NA	6q27	PDE10A	rs2983511-C	0.307107130111078	1E-120		0.1155	[0.11-0.13] SD decrease	Illumina [22400000] (imputed)	N
1851	chr6	166043958	166043959	rs2983511	28333968	Nielsen TR	2017-03-23	PLoS One	A genome-wide association study of thyroid stimulating hormone and free thyroxine in Danish children and adolescents.	Plasma thyroid-stimulating hormone levels	1,680 Danish ancestry children and adolescents	2,129 Danish ancestry children and adolescents	6q27	PDE10A	rs2983511-G	0.605	5E-16		0.112	[0.085-0.139] unit increase	Illumina [8508717] (imputed)	N
1851	chr6	166046482	166046483	rs753760	23408906	Porcu E	2013-02-07	PLoS Genet	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 14,459 European ancestry females, up to 10,936 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males	NA	6q27	PDE10A	rs753760-C	0.691	6E-20	(TSH - Males)	0.131	[0.1-0.16] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1851	chr6	166046482	166046483	rs753760	23408906	Porcu E	2013-02-07	PLoS Genet	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 14,459 European ancestry females, up to 10,936 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males	NA	6q27	PDE10A	rs753760-C	0.691	5E-9	(TSH - Females)	0.076	[0.051-0.101] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1851	chr6	166046482	166046483	rs753760	23408906	Porcu E	2013-02-07	PLoS Genet	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 14,459 European ancestry females, up to 10,936 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males	NA	6q27	PDE10A	rs753760-C	0.691	1E-24	(TSH)	0.1	[0.08-0.12] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1851	chr6	166047033	166047034	rs1079418	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hypothyroidism	30,155 European ancestry cases, 379,986 European ancestry controls, 1,114 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	6q27		rs1079418-G	NR	2E-9		0.0657	[0.044-0.087] unit decrease	Affymetrix, Illumina [25801083] (imputed)	N
1851	chr6	166047033	166047034	rs1079418	32581359	Saevarsdottir S	2020-06-24	Nature	FLT3 stop mutation increases FLT3 ligand level and risk of autoimmune thyroid disease.	Autoimmune thyroid disease	30,234 European ancestry cases, 724,172 European ancestry controls	NA	6q27	PDE10A	rs1079418-A	0.691	4E-9		1.0638298	[NR]	Affymetrix, Illumina [42900000] (imputed)	N
1851	chr6	166047033	166047034	rs1079418	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	6q27		rs1079418-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1851	chr6	166047033	166047034	rs1079418	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Hypothyroidism	17,558 European ancestry cases, 117,083 European ancestry controls	NA	6q27	PDE10A	rs1079418-?	NR	9E-12		1.0964912	[1.07-1.13]	Illumina [13676411] (imputed)	N
1851	chr6	166050118	166050119	rs2983514	30367059	Teumer A	2018-10-26	Nat Commun	Genome-wide analyses identify a role for SLC17A4 and AADAT in thyroid hormone regulation.	Hypothyroidism	3,340 European ancestry cases, 49,983 European ancestry controls	NA	6q27	PDE10A	rs2983514-A	0.67	2E-8		0.154	[0.1-0.21] unit increase	Affymetrix, Illumina [5965951] (imputed)	N
1851	chr6	166050118	166050119	rs2983514	30367059	Teumer A	2018-10-26	Nat Commun	Genome-wide analyses identify a role for SLC17A4 and AADAT in thyroid hormone regulation.	Hyperthyroidism	1,840 European ancestry cases, 49,983 European ancestry controls	NA	6q27	PDE10A	rs2983514-A	0.65	5E-10		0.199	[0.14-0.26] unit decrease	Affymetrix, Illumina [5965951] (imputed)	N
1852	chr6	166074759	166074760	rs2983533	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	6q27	PDE10A	rs2983533-G	0.724405	3E-10		0.015416194	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1852	chr6	166074759	166074760	rs2983533	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	6q27	PDE10A	rs2983533-G	0.724423	3E-12		0.017272396	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1852	chr6	166074759	166074760	rs2983533	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	6q27	PDE10A	rs2983533-G	0.72442	6E-12		0.017037822	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1852	chr6	166074759	166074760	rs2983533	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	6q27	NR	rs2983533-G	0.726211	5E-11		0.013771	[0.0097-0.0179] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1852	chr6	166074759	166074760	rs2983533	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q27	NR	rs2983533-G	0.733717	3E-10				Affymetrix, Illumina [24653286] (imputed)	N
1852	chr6	166074759	166074760	rs2983533	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	6q27	NR	rs2983533-G	0.726266	1E-12		0.014925	[0.011-0.019] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
1852	chr6	166074759	166074760	rs2983533	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q27	NR	rs2983533-G	0.733372	2E-11				Affymetrix, Illumina [24558453] (imputed)	N
1852	chr6	166074759	166074760	rs2983533	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	6q27	NR	rs2983533-G	0.726246	2E-13		0.015437	[0.011-0.02] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
1852	chr6	166074759	166074760	rs2983533	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	6q27		rs2983533-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1852	chr6	166082631	166082632	rs28360654	33501934	Suzuki K	2021-01-27	Inflamm Bowel Dis	Genetic Background of Mesalamine-induced Fever and Diarrhea in Japanese Patients with Inflammatory Bowel Disease.	Fever in mesalamine-treated irritable bowel disease	90 Japanese ancestry cases, 1,433 Japanese ancestry controls	22 Japanese ancestry cases, 766 Japanese ancestry controls	6q27	NR	rs28360654-C	0.453	4E-7		2.07	[1.79-2.35]	NR [7215020] (imputed)	N
1852	chr6	166108326	166108326	rs74952072	32472697	Verma SS	2020-05-30	Clin Pharmacol Ther	Genome-wide association study of platelet reactivity and cardiovascular response in patients treated with clopidogrel: a study by the International Clopidogrel Pharmacogenomics Consortium (ICPC).	Platelet reactivity in response to clopidogrel treatment	2,592 European ancestry individuals	NA	6q27	GAPDHP72	rs74952072-?	0.04	1E-6	(adjusted for CYP2C19*2)	0.32	NR unit increase	Illumina [5009928] (imputed)	N
1852	chr6	166118581	166118582	rs12208309	32902719	Hebbar P	2020-09-09	Hum Genet	Genome-wide landscape establishes novel association signals for metabolic traits in the Arab population.	High density lipoprotein cholesterol levels	2,732 Kuwaiti ancestry individuals	NA	6q27	PDE10A	rs12208309-?	NR	7E-7		4.974	NR unit increase	Illumina [up to 1520000] (imputed)	N
1852	chr6	166128637	166128638	rs9364813	22566634	Benjamin DJ	2012-05-07	Proc Natl Acad Sci U S A	The genetic architecture of economic and political preferences.	Economic and political preferences (immigration/crime)	9,617 European ancestry individuals	NA	6q27	intergenic	rs9364813-G	NR	8E-6		0.265	[0.15-0.38] unit increase	Illumina [628922]	N
1852	chr6	166142455	166142456	rs2934844	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	6q27	PDE10A	rs2934844-T	0.671634	2E-13		0.020752	[0.015-0.026] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1852	chr6	166147371	166147372	rs397688690	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	6q27		rs397688690-G	NR	6E-9		0.0124	[0.0083-0.0165] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
1852	chr6	166147371	166147372	rs397688690	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	6q27		rs397688690-G	NR	2E-10		0.0125	[0.0086-0.0164] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
1852	chr6	166147371	166147372	rs397688690	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	6q27		rs397688690-G	NR	2E-10		0.0129	[0.009-0.0168] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
1852	chr6	166155456	166155457	rs1039002	22205951	Kerner B	2011-12-21	PLoS One	Genome-wide association study in bipolar patients stratified by co-morbidity.	Bipolar disorder	1,000 European ancestry cases, 1,034 European ancestry controls	NA	6q27	RP11-252P19.1	rs1039002-?	NR	2E-8	(Latent Class 1)			Affymetrix [728331]	N
1852	chr6	166162334	166162335	rs2934849	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	6q27	PDE10A	rs2934849-C	0.631316	2E-10		0.014482937	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
1852	chr6	166162334	166162335	rs2934849	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	6q27	PDE10A	rs2934849-C	0.631321	2E-10		0.014443211	[0.01-0.0189] unit decrease	Affymetrix [93095623] (imputed)	N
1852	chr6	166162334	166162335	rs2934849	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	6q27		rs2934849-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1852	chr6	166163881	166163882	rs3002433	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6q27		rs3002433-?	NR	4E-10				NR [~ 8900000] (imputed)	N
1852	chr6	166170538	166170539	rs9718104	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	6q27	NR	rs9718104-?		9E-19		0.0407684	[0.032-0.05] unit decrease	Affymetrix [19400418] (imputed)	N
1852	chr6	166175470	166175471	rs903432	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	6q27	PDE10A, LINC00473	rs903432-A		2E-7		0.387	unit increase	Affymetrix [at least 2696785] (imputed)	N
1852	chr6	166175470	166175471	rs903432	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	6q27	PDE10A, LINC00473	rs903432-A		5E-12		0.313	unit increase	Affymetrix [at least 2696785] (imputed)	N
1852	chr6	166177225	166177226	rs7770615	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls	NA	6q27	RP11-252P19.1	rs7770615-C	0.0676465	2E-8		0.092071705	[0.06-0.124] unit decrease	Affymetrix [7288503] (imputed)	N
1852	chr6	166178450	166178451	rs147212971	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Diastolic blood pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	6q27	PDE10A	rs147212971-T	0.06	2E-9		0.36	[0.24-0.48] unit decrease	Affymetrix [~ 9800000] (imputed)	N
1852	chr6	166179398	166179399	rs4709981	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	6q27		rs4709981-G	NR	2E-9		0.0125	[0.0084-0.0166] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1852	chr6	166179611	166179612	rs73030267	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	6q27		rs73030267-C	NR	2E-8		0.0205	[0.013-0.028] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
1852	chr6	166179962	166179963	rs7744143	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption interaction (2df test)	63,607 European ancestry drinkers, 10,193 African American or Afro-Caribbean drinkers, 2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,492 European ancestry non-drinkers, 11,223 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,058 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	6q27	LOC105378114, PDE10A	rs7744143-A	0.93	6E-11	(AA, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1852	chr6	166180946	166180947	rs6932812	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls, 20,367 East Asian ancestry cases, 158,359 East Asian ancestry controls	NA	6q27		rs6932812-G	NR	5E-8		0.068	[0.044-0.092] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1852	chr6	166180946	166180947	rs6932812	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	6q27		rs6932812-G	NR	9E-9		0.0531	[0.035-0.071] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1852	chr6	166180946	166180947	rs6932812	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	6q27		rs6932812-?	NR	5E-12				NR [~ 8900000] (imputed)	N
1852	chr6	166182482	166182483	rs1021508	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	6q27		rs1021508-T	NR	3E-8		0.0108	[0.0071-0.0145] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1852	chr6	166182535	166182536	rs1021509	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	6q27	RP11-252P19.1, PDE10A	rs1021509-A	0.379994	5E-11		0.015143271	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1852	chr6	166182804	166182805	rs4305701	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	6q27		rs4305701-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1852	chr6	166182900	166182901	rs1472265	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	6q27	RP11-252P19.1, PDE10A	rs1472265-C	0.385162	2E-9		0.013787798	[0.0093-0.0183] unit decrease	Affymetrix [93095623] (imputed)	N
1852	chr6	166182900	166182901	rs1472265	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q27	NR	rs1472265-C	0.399369	1E-12				Affymetrix, Illumina [24588908] (imputed)	N
1852	chr6	166182900	166182901	rs1472265	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	6q27	NR	rs1472265-C	0.384829	4E-13		0.013592	[0.0099-0.0173] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1852	chr6	166185024	166185025	rs1472267	31097437	Plotnikov D	2019-05-16	Br J Ophthalmol	Association between birth weight and refractive error in adulthood: a Mendelian randomisation study.	Birth weight	188,039 European ancestry individuals	NA	6q27	NR	rs1472267-A	0.38	2E-10		0.021	[0.015-0.027] z score increase	Affymetrix [up to 10400000] (imputed)	N
1853	chr6	166252638	166252639	rs9364819	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	6q27	NR	rs9364819-T	NR	2E-10		0.0344	[0.024-0.045] unit decrease	Affymetrix [9000000] (imputed)	N
1853	chr6	166263487	166263488	rs9348050	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	6q27		rs9348050-T	0.4891	2E-9		0.013	[0.0091-0.0169] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
1853	chr6	166263487	166263488	rs9348050	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	6q27	PDE10A, LINC00473	rs9348050-T	0.4864	7E-11		1.022346		Affymetrix [11880941] (imputed)	N
1853	chr6	166263487	166263488	rs9348050	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	6q27		rs9348050-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1853	chr6	166310710	166310711	rs2461720	34838041	Naderi E	2021-11-27	J Transl Med	A two-stage genome-wide association study of radiation-induced acute toxicity in head and neck cancer.	radiation-induced toxicity (physician-rated acute xerostomia)	869 Dutch ancestry individuals	246 Dutch ancestry individuals	6q27		rs2461720-A	NR	2E-6		0.092500106	[0.054-0.131] decrease	Illumina [6334277] (imputed)	N
1853	chr6	166313683	166313684	rs2457982	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6q27	PDE10A	rs2457982-A	0.2886	2E-6		0.0347	[0.021-0.049] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1853	chr6	166327141	166327142	rs10946106	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	6q27	NR	rs10946106-T	NR	3E-17		0.026	[0.02-0.032] unit decrease	Affymetrix [9000000] (imputed)	N
1853	chr6	166327885	166327886	rs9347099	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	6q27	NR	rs9347099-T	NR	2E-33		0.0444	[0.037-0.052] unit decrease	Affymetrix [9000000] (imputed)	N
1853	chr6	166329861	166329862	rs991946	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	6q27		rs991946-T	NR	2E-21		0.0124	[0.0099-0.0149] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1854	chr6	166341869	166341870	rs7768382	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	6q27	PDE10A	rs7768382-T	0.5229	2E-26		0.0201	[0.016-0.024] unit increase	Affymetrix [18391927] (imputed)	N
1854	chr6	166341869	166341870	rs7768382	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6q27		rs7768382-?	NR	8E-26				NR [~ 8900000] (imputed)	N
1854	chr6	166362012	166362013	rs11756223	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		PDE10A	rs11756223-?	NR	6E-12	(female)	0.439718	[NR] unit increase	Affymetrix [NR] (imputed)	N
1854	chr6	166368396	166368397	rs3914144	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6q27	PDE10A	rs3914144-?	NR	1E-6	(glutamine)	0.35411626	[0.21-0.5] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1854	chr6	166397491	166397492	rs55725944	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	6q27	NR	rs55725944-G	NR	3E-15		0.0403	[0.03-0.05] unit increase	Affymetrix [9000000] (imputed)	N
1854	chr6	166411280	166411281	rs117152417	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	6q27	NR	rs117152417-G	0.9872	3E-8		1.1587485	[1.11-1.21]	Affymetrix, Illumina [NR] (imputed)	N
1854	chr6	166416027	166416028	rs62425398	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	6q27	PDE10A	rs62425398-C	0.893663	2E-11		0.0154122	[0.011-0.02] unit decrease	Affymetrix [12370749]	N
1854	chr6	166417217	166417218	rs300132	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	148,767 East Asian ancestry individuals	NA	6q27		rs300132-C	0.857611	1E-11		0.0329206	[0.023-0.042] unit increase	Illumina [13478792] (imputed)	N
1854	chr6	166417217	166417218	rs300132	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Blood urea nitrogen levels	139,818 Japanese ancestry individuals	NA	6q27	LINC00602, T	rs300132-?	NR	3E-11		0.03418	[0.024-0.044] unit increase novel	Illumina [6108953] (imputed)	N
1854	chr6	166421126	166421127	rs300143	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	6q27		rs300143-G	NR	5E-65		0.0356	[0.031-0.04] unit decrease	Affymetrix, Illumina [20538307] (imputed)	N
1854	chr6	166421126	166421127	rs300143	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	6q27	LINC00602	rs300143-A	0.6225	2E-32		0.0096	[0.008-0.0112] unit increase	Affymetrix, Illumina [8176554] (imputed)	N
1854	chr6	166451696	166451697	rs12195036	24954895	Simino J	2014-06-19	Am J Hum Genet	Gene-age interactions in blood pressure regulation: a large-scale investigation with the CHARGE, Global BPgen, and ICBP Consortia.	Blood pressure	55,796 European ancestry individuals	43,445 European ancestry individuals, 1,849 Chinese ancestry individuals, 2,502 Malay ancestry individuals, 2,476 Asian Indian ancestry individuals, 1,855 Asian ancestry individuals	6q27	LINC00602	rs12195036-T	0.95	5E-7	(EA, MAP, Age 20-29)	3.11	[1.91-4.31] mmHg decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1855	chr6	166462670	166462671	rs35540914	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6q27	GAPDHP72	rs35540914-A	NR	6E-9		0.0269546	[0.018-0.036] unit increase	Affymetrix [323123] (imputed)	N
1855	chr6	166468914	166468915	rs300614	34304350	Lim WY	2021-07-25	Genes Genomics	Identification of genetic variants for blood insulin level in sex-stratified Korean population and evaluation of the causal relationship between blood insulin level and polycystic ovary syndrome.	Insulin levels	4,658 Korean ancestry females, 4,182 Korean ancestry males	NA	6q27		rs300614-C	0.04	8E-7		0.95	unit increase	Affymetrix [NR] (imputed)	N
1855	chr6	166468914	166468915	rs300614	34304350	Lim WY	2021-07-25	Genes Genomics	Identification of genetic variants for blood insulin level in sex-stratified Korean population and evaluation of the causal relationship between blood insulin level and polycystic ovary syndrome.	Insulin levels	4,658 Korean ancestry females	NA	6q27		rs300614-C	0.04	9E-7		1.37	unit increase	Affymetrix [NR] (imputed)	N
1855	chr6	166482538	166482539	rs35739771	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	6q27	NR	rs35739771-T	NR	1E-14		0.0228	[0.017-0.029] unit decrease	Affymetrix [9000000] (imputed)	N
1855	chr6	166501349	166501349	rs113289039	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6q27	NR	rs113289039-AG	0.3138	3E-7	(EA)	0.0366	[0.023-0.051] unit decrease	Illumina [~ 11800000] (imputed)	N
1855	chr6	166502246	166502247	rs7741938	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	6q27		rs7741938-A	NR	9E-9		0.0151	[0.01-0.02] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
1855	chr6	166519389	166519390	rs11757231	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6q27	NR	rs11757231-?	NR	5E-6		4.572	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1855	chr6	166534741	166534742	rs6456042	22538805	Tantisira KG	2012-04-26	Am J Respir Crit Care Med	Genome-wide association identifies the T gene as a novel asthma pharmacogenetic locus.	Asthma	418 European ancestry cases	407 European ancestry cases	6q27	T	rs6456042-?	NR	6E-6				Affymetrix [444088]	N
1855	chr6	166568944	166568945	rs552417068	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	6q27	NR	rs552417068-?	NR	6E-6		1.28248	[0.73-1.84] unit increase	NR [13958389] (imputed)	N
1855	chr6	166571442	166571443	rs1056053	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue/subcutaneous adipose tissue ratio	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	6q27	T	rs1056053-T	0.59	4E-6	(overall)			Affymetrix, Illumina [2500000] (imputed)	N
1855	chr6	166584737	166584738	rs3127344	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6q27		rs3127344-?	NR	3E-17				NR [~ 8900000] (imputed)	N
1856	chr6	166608848	166608849	rs6912533	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6q27	RNU6-153P	rs6912533-C	NR	2E-8		0.0182895	[0.012-0.025] unit increase	Affymetrix [323123] (imputed)	N
1856	chr6	166611550	166611551	rs182516353	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	6q27	RNU6-153P	rs182516353-A	0.0015	6E-6		0.9236	[0.52-1.32] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1856	chr6	166621955	166621956	rs6908843	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1b levels	8,243 Finnish ancestry individuals	NA	6q27	NR	rs6908843-G	NR	7E-6		0.0941	[0.053-0.135] SD units decrease	NR [10700000] (imputed)	N
1856	chr6	166662067	166662068	rs10946143	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6q27	NR	rs10946143-A	0.01568	2E-10	(ARSA)	0.006348	NR unit increase	Illumina [1671387] (imputed)	N
1856	chr6	166671762	166671763	rs12211694	34025683	Kanoni S	2021-05-07	Front Immunol	Nutrigenetic Interactions Might Modulate the Antioxidant and Anti-Inflammatory Status in Mastiha-Supplemented Patients With NAFLD.	Hemoglobin levels in non-alcoholic fatty liver disease x mastiha supplementation interaction	35 European or unknown ancestry mastiha exposed individuals, 52 European or unknown ancestry unexposed individuals	NA	6q27	GNG5P1	rs12211694-A	0.69	1E-8		1.662	[1.09-2.23] unit decrease	Illumina [10307610] (imputed)	N
1856	chr6	166680928	166680929	rs7740776	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	6q27	NR	rs7740776-?	NR	1E-6				Affymetrix [NR]	N
1856	chr6	166706168	166706169	rs6915183	20834067	Yashin AI	2010-09-01	Aging (Albany NY)	Joint influence of small-effect genetic variants on human longevity.	Longevity	1,173 individuals	NA	6q27	PRR18	rs6915183-?	NR	1E-6	(less than or equal to)			NR [~ 550000]	N
1856	chr6	166722485	166722486	rs4075454	29698419	Pande M	2018-04-26	PLoS One	Genetic susceptibility markers for a breast-colorectal cancer phenotype: Exploratory results from genome-wide association studies.	Breast cancer and/or colorectal cancer	589 European ancestry colorectal cancer with a family history of breast cancer cases, 378 European ancestry breast cancer cases with a family history of colorectal cancer cases, 18 European ancestry breast and colorectal cancer cases, 1,769 European ancestry controls	NA	6q27	PRR18	rs4075454-?	0.49	5E-6		1.2987013	[1.16-1.52]	Illumina [6220060] (imputed)	N
1857	chr6	166772837	166772838	rs117651719	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Acetone levels	115,079 European ancestry individuals	NA	6q27		rs117651719-G	0.970144	8E-11		0.0786734	[0.055-0.102] unit increase	NR [11722792] (imputed)	N
1857	chr6	166775102	166775103	rs150515955	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Acetoacetate levels	115,079 European ancestry individuals	NA	6q27		rs150515955-C	0.970005	3E-20		0.110897	[0.087-0.134] unit increase	NR [11722792] (imputed)	N
1858	chr6	166865674	166865675	rs4710051	29860282	Scelsi MA	2018-05-30	Brain	Genetic study of multimodal imaging Alzheimer's disease progression score implicates novel loci.	Alzheimer's disease progression score	944 European ancestry individuals	NA	6q27	RPS6KA2	rs4710051-?		2E-6	(corrected for APOE4 status and baseline cortical amyloid)	0.05	[NR] unit decrease	Illumina [5137218] (imputed)	N
1858	chr6	166920484	166920485	rs78599761	32890573	Yan Q	2020-09-02	J Allergy Clin Immunol	A genome-wide association study of asthma hospitalizations in adults.	Exacerbations requiring hospitalisation in asthma	1,658 British ancestry cases, 32,509 British ancestry controls	NA	6q27	NR	rs78599761-G	0.99	2E-6		1.78	[NR]	Affymetrix [87696888] (imputed)	N
1858	chr6	166957333	166957334	rs6456092	30796134	Soderholm M	2019-02-22	Neurology	Genome-wide association meta-analysis of functional outcome after ischemic stroke.	3-month functional outcome in ischaemic stroke (modified Rankin score)	1,832 European and unknown ancestry modified Rankin score 0-1 cases, 2,620 European and unknown ancestry modified Rankin score 2-6 cases	NA	6q27	RPS6KA2	rs6456092-T	0.64	6E-6	(adjusted for severity)	1.2820514	[1.18-1.39]	Affymetrix, Illumina [~ 8500000] (imputed)	N
1858	chr6	166979045	166979046	rs3778401	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation GrimAge acceleration	6,148 African American individuals	NA	6q27	NR	rs3778401-T	0.3982	1E-9		0.5626	[0.38-0.74] unit decrease	Affymetrix, Illumina [12989440] (imputed)	N
1859	chr6	166995146	166995147	rs4710069	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation GrimAge acceleration	34,467 European ancestry individuals, 6,148 African American individuals	NA	6q27	NR	rs4710069-?	NR	7E-10				Affymetrix, Illumina [6210740] (imputed)	N
1859	chr6	166995259	166995260	rs10455979	34002096	Mullins N	2021-05-17	Nat Genet	Genome-wide association study of more than 40,000 bipolar disorder cases provides new insights into the underlying biology.	Bipolar disorder	41,917 European ancestry cases, 371,549 European ancestry controls	NA	6q27	RPS6KA2	rs10455979-C	0.5	4E-9		0.94592	[0.93-0.96]	Affymetrix, Illumina [7549318] (imputed)	N
1859	chr6	166995259	166995260	rs10455979	34002096	Mullins N	2021-05-17	Nat Genet	Genome-wide association study of more than 40,000 bipolar disorder cases provides new insights into the underlying biology.	Bipolar I disorder	25,060 European ancestry cases, 449,978 European ancestry controls	NA	6q27	NR	rs10455979-C	0.496	2E-9		0.93221	[0.91-0.95]	Affymetrix, Illumina [7549318] (imputed)	N
1859	chr6	166995259	166995260	rs10455979	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	6q27	RPS6KA2	rs10455979-G	0.46599999999999997	4E-8		1.0640675		NR [9372253] (imputed)	N
1859	chr6	166996990	166996991	rs960145	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar I disorder	14,879 European ancestry cases, 31,358 European ancestry controls	NA	6q27	NR	rs960145-A	0.47	2E-7		1.08166		NR [9372253] (imputed)	N
1859	chr6	166997176	166997177	rs7744326	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation GrimAge acceleration	6,148 African American individuals	NA	6q27	NR	rs7744326-C	0.7613	5E-12		0.8139	[0.58-1.04] unit decrease	Affymetrix, Illumina [12989440] (imputed)	N
1859	chr6	167003695	167003696	rs7738206	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation-estimated plasminogen activator inhibitor-1 levels	6,149 African American individuals	NA	6q27	NR	rs7738206-T	0.8105	1E-10		387.531	[269.2-505.86] unit decrease	Affymetrix, Illumina [12990252] (imputed)	N
1859	chr6	167018720	167018721	rs10946177	32869517	Sung H	2020-08-31	Mol Genet Genomic Med	Genome-wide association study of cafe-au-lait macule number in neurofibromatosis type 1.	Cafe-au-lait macule number in neurofibromatosis type1	112 European ancestry individuals	59 European ancestry individuals	6q27	RPS6KA2	rs10946177-?		4E-6		0.099	[NR] unit increase	Illumina [608561]	N
1859	chr6	167059625	167059626	rs9295358	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	6q27	RPS6KA2	rs9295358-A	0.718	2E-6		1.06056	[1.04-1.08]	NR [9372253] (imputed)	N
1859	chr6	167059625	167059626	rs9295358	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar I disorder	14,879 European ancestry cases, 31,358 European ancestry controls	NA	6q27	RPS6KA2	rs9295358-A	0.719	7E-8		1.09527		NR [9372253] (imputed)	N
1859	chr6	167091850	167091851	rs55872852	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	6q27		rs55872852-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1859	chr6	167094650	167094651	rs718084	31219150	Ekenberg C	2019-06-13	J Infect Dis	Single nucleotide polymorphisms in HLA alleles are associated with HIV-1 viral load in demographically diverse, ART-naive participants from the START trial.	Pre-treatment viral load in HIV-1 infection	1,398 European ancestry individuals, 572 Black individuals, 418 Hispanic individuals, 13 Asian ancestry individuals, 39 individuals	NA	6q27	RPS6KA2	rs718084-T	0.398	8E-17		0.2	[0.15-0.25] unit decrease	Affymetrix [339439]	N
1859	chr6	167108715	167108716	rs112992077	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	6q27	RPS6KA2	rs112992077-T	0.02	3E-11	(X - 23581)	1.467	[1.04-1.9] unit increase	Illumina [7750367] (imputed)	N
1859	chr6	167114207	167114208	rs6935464	33430853	Ustinova M	2021-01-11	BMC Med Genomics	Novel susceptibility loci identified in a genome-wide association study of type 2 diabetes complications in population of Latvia.	Macrovascular complications in type 2 diabetes	333 European ancestry cases, 226 European ancestry controls	NA	6q27	RPS6KA2	rs6935464-A	0.26	4E-8		2.25	[6.69-3.01]	Illumina [5378539] (imputed)	N
1860	chr6	167135155	167135156	rs6917154	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6q27		rs6917154-T	0.1236	3E-9		0.0127	[0.0086-0.0168] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1860	chr6	167135155	167135156	rs6917154	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6q27	Intergenic	rs6917154-T	0.1236	6E-9	(MTAG)	0.0116	[0.0077-0.0155] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1860	chr6	167177421	167177422	rs635808	23259602	Wang X	2012-12-21	BMC Oral Health	Genome-wide association scan of dental caries in the permanent dentition.	Dental caries	1,483 European ancestry comparatively younger individuals, 5,960 European ancestry comparatively older individuals	NA	6q27	RPS6KA2	rs635808-?	NR	1E-7	(Comparatively Younger)			Affymetrix, Illumina [~ 1400000] (imputed)	N
1860	chr6	167188052	167188053	rs149233180	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	6q27	NR	rs149233180-?	NR	4E-6		1.18788	[0.68-1.69] unit increase	NR [13958389] (imputed)	N
1861	chr6	167264100	167264101	rs4710117	25189868	Sung YJ	2014-09-03	Am J Hypertens	Gene-smoking interactions identify several novel blood pressure loci in the Framingham Heart Study.	Blood pressure (smoking interaction)	Up to 6,889 individuals	NA	6q27	RPS6KA2	rs4710117-?	NR	8E-7	(SBP,Pack-years)			Affymetrix [2485435] (imputed)	N
1861	chr6	167264439	167264442	rs573255152	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	6q27	RPS6KA2	rs573255152-A	0.0018	8E-6		0.5961	[0.33-0.86] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1861	chr6	167264439	167264442	rs573255152	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	6q27	RPS6KA2	rs573255152-A	0.0018	8E-6		0.5961	[0.33-0.86] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1861	chr6	167280957	167280958	rs76056273	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	6q27	NR	rs76056273-?	NR	4E-6		10672.714	NR unit decrease	Illumina [2379855]	N
1861	chr6	167329143	167329144	rs143050142	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	6q27	NR	rs143050142-?	NR	8E-7	(Japanese)	0.9785	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1861	chr6	167336150	167336151	rs9459805	24096698	De Vivo I	2013-10-06	Hum Genet	Genome-wide association study of endometrial cancer in E2C2.	Endometrial cancer	up to 2,695 European ancestry cases, up to 2,777 European ancestry controls	up to 3,235 cases, up to 12,059 controls	6q27	LOC100131869, RNASET2	rs9459805-?	NR	8E-6	(European, Endometroid subtype)			Illumina [873935]	N
1861	chr6	167342766	167342767	rs71571466	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	6q27	RP11-514O12.4	rs71571466-A	0.0627323	7E-9		0.1085496	[0.072-0.145] unit increase	Affymetrix [7288503] (imputed)	N
1861	chr6	167352103	167352104	rs3777722	25599974	Zhang H	2015-01-19	Genet Epidemiol	A genome-wide association study of early spontaneous preterm delivery.	Spontaneous preterm birth (preterm birth)	916 pre-term birth neonates, 935 term birth neonates	243 pre-term birth neonates, 149 term birth neonates	6q27	RNASET2	rs3777722-?	0.79	1E-9		1.64	[NR]	Affymetrix [797196]	N
1861	chr6	167360388	167360389	rs2236313	20526339	Quan C	2010-06-06	Nat Genet	Genome-wide association study for vitiligo identifies susceptibility loci at 6q27 and the MHC.	Vitiligo	1,117 Han Chinese ancestry cases, 1,429 Han Chinese ancestry controls	6,623 East Asian ancestry cases, 10,740 East Asian ancestry controls	6q27	RNASET2, FGFR1OP, CCR6	rs2236313-T	0.38	1E-16		1.2	[1.15-1.25]	Illumina [493909]	N
1861	chr6	167362872	167362873	rs117933444	28642124	Hensman Moss DJ	2017-06-20	Lancet Neurol	Identification of genetic variants associated with Huntington's disease progression: a genome-wide association study.	Huntington's disease progression	1,989 European and unknown ancestry mutation carriers	NA	6q27	FGFR1OP, MIR3939, RNASET2	rs117933444-?	NR	6E-6				Illumina [9650000] (imputed)	N
1861	chr6	167363472	167363473	rs3798305	24556642	Zeng Z	2014-02-18	Caries Res	Genome-wide association study of primary dentition pit-and-fissure and smooth surface caries.	Smooth-surface caries	1006 European ancestry individuals	NA	6q27	RPS6KA2, RNASET2	rs3798305-T	0.0103	7E-6		4.8339	[NR] unit increase	Illumina [1216189] (imputed)	N
1861	chr6	167370229	167370230	rs2247314	27723757	Jin Y	2016-11-01	Nat Genet	Genome-wide association studies of autoimmune vitiligo identify 23 new risk loci and highlight key pathways and regulatory variants.	Vitiligo	2,853 European ancestry cases and 37,405 European ancestry controls	1,827 European ancestry cases and 2,181 European ancestry controls	6q27	RNASET2, FGFR1OP, CCR6	rs2247314-T	0.6658	2E-18		1.2597632	[1.19-1.33]	Illumina [8966411] (imputed)	N
1861	chr6	167370531	167370532	rs2757041	32581359	Saevarsdottir S	2020-06-24	Nature	FLT3 stop mutation increases FLT3 ligand level and risk of autoimmune thyroid disease.	Autoimmune thyroid disease	30,234 European ancestry cases, 724,172 European ancestry controls	NA	6q27	RNASET2	rs2757041-C	0.654	2E-37		1.1363636	[NR]	Affymetrix, Illumina [42900000] (imputed)	N
1861	chr6	167371109	167371110	rs2149085	23850713	Yang SK	2013-07-14	Gut	Genome-wide association study of Crohn's disease in Koreans revealed three new susceptibility loci and common attributes of genetic susceptibility across ethnic populations.	Crohn's disease	532 Korean ancestry cases, 733 Korean ancestry controls	1,779 Korean ancestry cases, 1,709 Korean ancestry controls	6q27	RNASET2, FGFR1OP, CCR6, MIR3939	rs2149085-T	0.379	8E-12		1.34	[1.23-1.45]	Illumina [5664371] (imputed)	N
1861	chr6	167372200	167372210	rs142804409	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hypothyroidism	30,155 European ancestry cases, 379,986 European ancestry controls, 1,114 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	6q27		rs142804409-G	NR	1E-16		0.0862	[0.066-0.107] unit decrease	Affymetrix, Illumina [25801083] (imputed)	N
1861	chr6	167373546	167373547	rs1819333	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	6q27	RP11-514O12.4, RNASET2, FGFR1OP, CCR6	rs1819333-?		9E-15				Illumina [9725440] (imputed)	N
1861	chr6	167373546	167373547	rs1819333	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	6q27	RP11-514O12.4, RNASET2, FGFR1OP, CCR6	rs1819333-?		2E-20				Illumina [9560910] (imputed)	N
1861	chr6	167373546	167373547	rs1819333	27569725	Yang SK	2016-08-25	Gastroenterology	Identification of Loci at 1q21 and 16q23 That Affect Susceptibility to Inflammatory Bowel Disease in Koreans.	Inflammatory bowel disease	1,505 Korean ancestry cases, 4,041 Korean ancestry controls	1,989 Korean ancestry cases, 3,491 Korean ancestry controls	6q27	CCR6, RPS6KA2	rs1819333-C	0.39	1E-6				Illumina [522285]	N
1861	chr6	167373546	167373547	rs1819333	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	6q27	NR	rs1819333-A	0.54	2E-19	(EA)	1.1177828	[1.09-1.14]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1861	chr6	167373546	167373547	rs1819333	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	6q27	RPS6KA2, RNASET2, CCR6	rs1819333-T	0.523	7E-21		1.081	[1.051-1.113]	Affymetrix, Illumina [1230000] (imputed)	N
1861	chr6	167376465	167376466	rs6920364	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	6q27	RNASET2, MIR3939	rs6920364-C	0.456226848	1E-8		1.0700544	[1.04537378-1.095317639]	Illumina [10439017] (imputed)	N
1862	chr6	167383074	167383075	rs9355610	21841780	Chu X	2011-08-14	Nat Genet	A genome-wide association study identifies two new risk loci for Graves' disease.	Graves' disease	1,468 Chinese ancestry cases, 1,490 Chinese ancestry controls	3,994 Chinese ancestry cases, 3,510 Chinese ancestry controls	6q27	RNASET2, FGFR1OP	rs9355610-G	0.47	7E-10		1.19	[1.13-1.26]	Illumina [486049]	N
1862	chr6	167383266	167383267	rs73043122	29310926	Sharma A	2018-01-05	J Autoimmun	Identification of non-HLA genes associated with development of islet autoimmunity and type 1 diabetes in the prospective TEDDY cohort.	Type 1 diabetes in high risk HLA genotype individuals (time to event)	5,806 European ancestry children	NA	6q27	RNASET2, MIR3939	rs73043122-C	0.013	4E-6		3.351		Illumina [131847]	N
1862	chr6	167386614	167386615	rs385863	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hyperthyroidism	3,557 European ancestry cases, 456,942 European ancestry controls, 994 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	6q27		rs385863-G	NR	4E-10		0.1335	[0.092-0.175] unit increase	Affymetrix, Illumina [25841580] (imputed)	N
1862	chr6	167390241	167390242	rs444210	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung adenocarcinoma	11,273 European ancestry cases,  55,483 European ancestry controls	NA	6q27	RNASET2, MIR3939	rs444210-A	0.457292309	4E-6		1.0776904	[1.044016827-1.112449998]	Illumina [10439017] (imputed)	N
1862	chr6	167390241	167390242	rs444210	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	6q27	NR	rs444210-?	NR	2E-17	(EA)			Affymetrix, Illumina [~ 9000000] (imputed)	N
1862	chr6	167390671	167390675	rs72033857	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	6q27	RNASET2, MIR3939	rs72033857-C	0.11	1E-9		1.057	[1.04-1.07]	Affymetrix, Illumina [8307659] (imputed)	N
1862	chr6	167392173	167392174	rs9457247	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	6q27	NR	rs9457247-?	NR	2E-18	(EA)			Affymetrix, Illumina [~ 9000000] (imputed)	N
1862	chr6	167394633	167394634	rs4710154	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Basal cell carcinoma	31,787 European ancestry cases, 619,351 European ancestry controls	NA	6q27	CCR6	rs4710154-T	0.361241	3E-17		1.0752687	[1.05-1.1]	Affymetrix, Illumina [up to 9061544] (imputed)	N
1862	chr6	167394633	167394634	rs4710154	27539887	Chahal HS	2016-08-19	Nat Commun	Genome-wide association study identifies 14 novel risk alleles associated with basal cell carcinoma.	Basal cell carcinoma	12.945 European ancestry cases, 274,252 European ancestry controls	4,242 European ancestry cases, 12,802 European ancestry controls	6q27	MIR3939	rs4710154-T	0.32	1E-8		1.08	[NR]	Illumina [at least 560000] (imputed)	N
1862	chr6	167399511	167399512	rs9366078	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6q27		rs9366078-?	NR	5E-9		1.06888	[1.05-1.09]	NR [685523]	N
1862	chr6	167400344	167400345	rs9356551	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Autoimmune traits	approximately 459,000 European ancestry individuals	NA	6q27		rs9356551-?	NR	2E-23				NR [~ 8900000] (imputed)	N
1862	chr6	167402535	167402536	rs1951459	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	6q27	RP1-167A14.2	rs1951459-A	0.334248	3E-33		0.115464516	[0.097-0.134] unit decrease	Affymetrix [7288503] (imputed)	N
1862	chr6	167402535	167402536	rs1951459	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	6q27		rs1951459-?	NR	1E-33				NR [~ 8900000] (imputed)	N
1862	chr6	167403872	167403873	rs933243	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	6q27		rs933243-A	NR	3E-36		0.1132	[0.096-0.131] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1862	chr6	167406632	167406633	rs415890	21102463	Franke A	2010-11-21	Nat Genet	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry trios	6q27	CCR6	rs415890-C	0.522	3E-12		1.17	[1.12-1.22]	Affymetrix, Illumina [953241] (imputed)	N
1862	chr6	167422622	167422623	rs201601284	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Skin cancer	25,928 European ancestry cases, 466,275 European ancestry controls, 154 East Asian ancestry cases, 178,572 East Asian ancestry controls	NA	6q27		rs201601284-G	NR	1E-11		0.0709	[0.051-0.091] unit increase	Affymetrix, Illumina [25845421] (imputed)	N
1862	chr6	167437987	167437988	rs2301436	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	6q27	FGFR1OP	rs2301436-?	NR	8E-7	(subset analysis)			Illumina [130052]	N
1862	chr6	167437987	167437988	rs2301436	20570966	McGovern DP	2010-06-22	Hum Mol Genet	Fucosyltransferase 2 (FUT2) non-secretor status is associated with Crohn's disease.	Crohn's disease	896 European ancestry cases, 3,204 European ancestry controls	1,174 European ancestry cases, 357 European ancestry controls	6q27	FGFR10P, RNASE2, CCR6	rs2301436-?	NR	6E-8		1.37	[1.22-1.53]	Illumina [304825]	N
1862	chr6	167437987	167437988	rs2301436	18587394	Barrett JC	2008-06-29	Nat Genet	Genome-wide association defines more than 30 distinct susceptibility loci for Crohn's disease.	Crohn's disease	3,230 European ancestry cases, 4,829 European ancestry controls	1,339 European ancestry trios, 2,325 European ancestry cases, 1,809 European ancestry controls	6q27	CCR6	rs2301436-T	0.46	1E-12		1.21	[NR]	Affymetrix, Illumina [635547] (imputed)	N
1862	chr6	167455628	167455629	rs162298	33549134	Adolphe C	2021-02-06	Genome Med	Genetic and functional interaction network analysis reveals global enrichment of regulatory T cell genes influencing basal cell carcinoma susceptibility.	Basal cell carcinoma	17,416 European ancestry cases, 375,455 European ancestry controls	NA	6q27	FGFR1OP	rs162298-A	0.248515	2E-13		0.090165034	[0.066-0.114] unit increase	Affymetrix [7260263] (imputed)	N
1862	chr6	167473192	167473193	rs13210649	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Graves' disease	1,678 European ancestry cases, 456,942 European ancestry controls, 2,809 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	6q27		rs13210649-G	NR	7E-10		0.1354	[0.092-0.178] unit increase	Affymetrix, Illumina [25841587] (imputed)	N
1862	chr6	167500561	167500562	rs204295	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Keratinocyte cancer (MTAG)	at least 18,538 European ancestry cases, at least 340,302 European ancestry controls	NA	6q27	CCR6	rs204295-T	0.462004	9E-16		1.07	[1.05-1.09]	Affymetrix [7600000] (imputed)	N
1862	chr6	167506733	167506734	rs17615336	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	6q27	FGFR1OP, CCR6	rs17615336-A	0.602807613	9E-6		1.0548303	[1.03-1.08]	Illumina [10439017] (imputed)	N
1863	chr6	167511585	167511586	rs111305875	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	6q27	RP11-517H2.6	rs111305875-?	NR	3E-7	(subset analysis)			Illumina [130052]	N
1863	chr6	167511765	167511766	rs150110	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	6q27		rs150110-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1863	chr6	167521675	167521676	rs4709148	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	2,495 East Asian ancestry cases, 4,283 East Asian ancestry controls	NA	6q27		rs4709148-T	NR	2E-10		0.246978	[0.17-0.32] unit decrease	NR [5275424] (imputed)	N
1863	chr6	167522299	167522300	rs6456156	28425483	Qiu F	2017-04-20	Nat Commun	A genome-wide association study identifies six novel risk loci for primary biliary cholangitis.	Primary biliary cholangitis	1,122 Han Chinese ancestry cases, 4,036 Han Chinese ancestry controls	907 Han Chinese ancestry cases, 2,127 Han Chinese ancestry controls	6q27	CCR6, FGFR10P	rs6456156-?	0.51	6E-7		1.2048193	[1.11-1.28]	Illumina [776516]	N
1863	chr6	167526095	167526096	rs968334	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	8,021 European ancestry cases, 16,489 European ancestry controls, 2,495 East Asian ancestry cases, 4,283 East Asian ancestry controls	NA	6q27		rs968334-T	NR	4E-10		0.122066	[0.084-0.16] unit increase	NR [2787054] (imputed)	N
1863	chr6	167531432	167531435	rs200770568	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip	15 Asian ancestry cases, 13 European ancestry cases, 15 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	6q27	NR	rs200770568-?	NR	6E-6		4.79	[3.44-6.69]	Illumina [539000] (imputed)	N
1863	chr6	167532792	167532793	rs3093024	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	8,021 European ancestry cases, 16,489 European ancestry controls	NA	6q27		rs3093024-A	NR	2E-6		0.10211	[0.06-0.145] unit increase	NR [5054572] (imputed)	N
1863	chr6	167532792	167532793	rs3093024	20453841	Kochi Y	2010-05-09	Nat Genet	A regulatory variant in CCR6 is associated with rheumatoid arthritis susceptibility.	Rheumatoid arthritis	2,303 Japanese ancestry cases, 3,380 Japanese ancestry controls	4,768 Japanese ancestry cases, 17,359 Japanese ancestry controls	6q27	CCR6	rs3093024-T	0.46	8E-19		1.19	[1.15-1.24]	Illumina [393217]	N
1863	chr6	167533061	167533062	rs1854853	24782177	Jiang L	2014-05-01	Arthritis Rheumatol	Novel risk loci for rheumatoid arthritis in Han Chinese and congruence with risk variants in Europeans.	Rheumatoid arthritis	433 Han Chinese ancestry ACPA positive cases, 519 Han Chinese ancestry ACPA negative cases, 943 Han Chinese ancestry controls	1,032 Han Chinese ancestry ACPA positive cases, 1,100 Han Chinese ancestry ACPA negative cases, 2,553 Han Chinese ancestry controls	6q27	CCR6	rs1854853-A	0.468	7E-15	(ACPA+ cases vs. all controls)	1.4164	[NR]	Affymetrix [3441843] (imputed)	N
1863	chr6	167533061	167533062	rs1854853	24782177	Jiang L	2014-05-01	Arthritis Rheumatol	Novel risk loci for rheumatoid arthritis in Han Chinese and congruence with risk variants in Europeans.	Rheumatoid arthritis	433 Han Chinese ancestry ACPA positive cases, 519 Han Chinese ancestry ACPA negative cases, 943 Han Chinese ancestry controls	1,032 Han Chinese ancestry ACPA positive cases, 1,100 Han Chinese ancestry ACPA negative cases, 2,553 Han Chinese ancestry controls	6q27	CCR6	rs1854853-A	0.468	2E-10	(all cases vs. all controls)	1.2642	[NR]	Affymetrix [3441843] (imputed)	N
1863	chr6	167534289	167534290	rs3093023	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6q27		rs3093023-?	NR	4E-7		0.946317	[0.92-0.97]	NR [685523]	N
1863	chr6	167534289	167534290	rs3093023	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	6q27	NR	rs3093023-A	NR	6E-12		0.0173	[0.012-0.022] unit increase	Affymetrix [9000000] (imputed)	N
1863	chr6	167534289	167534290	rs3093023	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	6q27	NR	rs3093023-A	NR	1E-18		0.0222	[0.017-0.027] unit increase	Affymetrix [9000000] (imputed)	N
1863	chr6	167534289	167534290	rs3093023	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	6q27	NR	rs3093023-A	0.43381	2E-10		0.012677	[0.0088-0.0166] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
1863	chr6	167534289	167534290	rs3093023	24782177	Jiang L	2014-05-01	Arthritis Rheumatol	Novel risk loci for rheumatoid arthritis in Han Chinese and congruence with risk variants in Europeans.	Rheumatoid arthritis	952 Han Chinese ancestry cases, 943 Han Chinese ancestry controls	5,539 European ancestry cases, 20,169 European ancestry controls	6q27	CCR6	rs3093023-A		4E-9		1.146	[NR]	Affymetrix [1497047] (imputed)	N
1863	chr6	167534289	167534290	rs3093023	20453842	Stahl EA	2010-05-09	Nat Genet	Genome-wide association study meta-analysis identifies seven new rheumatoid arthritis risk loci.	Rheumatoid arthritis	5,539 European ancestry cases, 20,169 European ancestry controls	6,768 European ancestry cases, 8,806 European ancestry controls	6q27	CCR6	rs3093023-A	0.43	2E-11		1.13	[NR]	Affymetrix, Illumina [~ 2716259] (imputed)	N
1863	chr6	167537753	167537754	rs59466457	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis (ACPA-positive)	up to 9,585 European ancestry cases, up to 33,742 European ancestry controls	NA	6q27	CCR6	rs59466457-A	0.44	3E-10		1.1455		Illumina [129464] (imputed)	N
1863	chr6	167537753	167537754	rs59466457	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis	up to 13,838 European ancestry cases, up to 33,742 European ancestry controls	NA	6q27	CCR6	rs59466457-A	0.44	3E-6		1.0903		Illumina [129464] (imputed)	N
1863	chr6	167539654	167539655	rs3093019	32723749	Kwon YC	2020-07-28	Ann Rheum Dis	Genome-wide association study in a Korean population identifies six novel susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis	4,068 Korean ancestry cases, 36,487 Korean ancestry controls	NA	6q27	CCR6	rs3093019-?		1E-13		0.83	[0.79-0.87]	Illumina [NR] (imputed)	N
1863	chr6	167539804	167539805	rs3093018	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Non-albumin protein levels	98,538 Japanese ancestry individuals	NA	6q27	NR	rs3093018-?	NR	1E-8		0.02737	[0.018-0.037] unit decrease novel	Illumina [6108953] (imputed)	N
1863	chr6	167539804	167539805	rs3093018	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Albumin-globulin ratio	98,626 Japanese ancestry individuals	NA	6q27	CCR6	rs3093018-?	NR	1E-8		0.02739	[0.018-0.037] unit increase novel	Illumina [6108953] (imputed)	N
1863	chr6	167540841	167540842	rs1571878	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (immunosuppressants)	3,954 European ancestry cases, 268,648 European ancestry controls, 3,483 East Asian ancestry cases, 175,243 East Asian ancestry controls	NA	6q27		rs1571878-T	NR	3E-15		0.1335	[0.1-0.17] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1863	chr6	167540841	167540842	rs1571878	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (immunosuppressants)	3,483 East Asian ancestry cases, 175,243 East Asian ancestry controls	NA	6q27		rs1571878-T	0.511410148	1E-12		0.17926829	[0.13-0.23] unit decrease	Illumina [13134967] (imputed)	N
1863	chr6	167540841	167540842	rs1571878	33310728	Ha E	2020-12-11	Ann Rheum Dis	Large-scale meta-analysis across East Asian and European populations updated genetic architecture and variant-driven biology of rheumatoid arthritis, identifying 11 novel susceptibility loci.	Rheumatoid arthritis	14,361 European ancestry cases, 43,923 European ancestry controls, 8,267 East Asian ancestry cases, 244,741 East Asian ancestry controls	NA	6q27		rs1571878-T	NR	4E-40		0.86	[0.84-0.88]	NR [13810676] (imputed)	N
1863	chr6	167540841	167540842	rs1571878	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	6q27	CCR6	rs1571878-T	NR	1E-31		0.145533	[0.035-0.256] unit decrease	Illumina [8380626] (imputed)	N
1863	chr6	167540841	167540842	rs1571878	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	6q27	CCR6	rs1571878-T	0.56	5E-15	(EA)	0.12182	[0.091-0.152] unit decrease	Illumina [8380626] (imputed)	N
1863	chr6	167540841	167540842	rs1571878	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	6q27	CCR6	rs1571878-T	0.52	1E-20	(East Asian)	0.24901	[0.2-0.3] unit decrease	Illumina [8380626] (imputed)	N
1863	chr6	167540841	167540842	rs1571878	24532676	Kim K	2014-02-14	Ann Rheum Dis	High-density genotyping of immune loci in Koreans and Europeans identifies eight new rheumatoid arthritis risk loci.	Rheumatoid arthritis (ACPA-positive)	2,234 Korean ancestry cases, 7,065 Korean ancestry controls, 10,288 European ancestry cases, 35,502 European ancestry controls	NA	6q27	CCR6	rs1571878-G	0.45	5E-17		1.14	[1.11-1.18]	Illumina [133816] (imputed)	N
1863	chr6	167540841	167540842	rs1571878	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	6q27	CCR6	rs1571878-C	0.48	1E-22	(East Asian)	1.28	[1.22-1.35]	Affymetrix, Illumina [up to 9739303] (imputed)	N
1863	chr6	167540841	167540842	rs1571878	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	6q27	CCR6	rs1571878-C	0.45	5E-35		1.17	[1.14-1.20]	Affymetrix, Illumina [up to 9739303] (imputed)	N
1863	chr6	167540841	167540842	rs1571878	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	6q27	CCR6	rs1571878-C	0.44	2E-18	(EA)	1.13	[1.10-1.17]	Affymetrix, Illumina [up to 9739303] (imputed)	N
1863	chr6	167540841	167540842	rs1571878	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis (ACPA-positive)	up to 9,585 European ancestry cases, up to 33,742 European ancestry controls	NA	6q27	CCR6	rs1571878-?	NR	1E-12				Illumina [129464] (imputed)	N
1863	chr6	167540841	167540842	rs1571878	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis	up to 13,838 European ancestry cases, up to 33,742 European ancestry controls	NA	6q27	CCR6	rs1571878-?	NR	2E-8				Illumina [129464] (imputed)	N
1863	chr6	167541257	167541258	rs3093017	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Rheumatoid arthritis	8,255 European ancestry cases, 409,001 European ancestry controls, 5,348 East Asian ancestry cases, 173,268 East Asian ancestry controls	NA	6q27		rs3093017-G	NR	4E-20		0.1179	[0.093-0.143] unit decrease	Affymetrix, Illumina [25835038] (imputed)	N
1863	chr6	167541257	167541258	rs3093017	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Rheumatoid arthritis	5,348 East Asian ancestry cases, 173,268 East Asian ancestry controls	NA	6q27		rs3093017-G	0.512948772	2E-19		0.18550274	[0.15-0.23] unit decrease	Illumina [13429970] (imputed)	N
1863	chr6	167541257	167541258	rs3093017	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Rheumatoid arthritis	4,199 Japanese ancestry cases, 208,254 Japanese ancestry controls	NA	6q27		rs3093017-G	0.523756034	2E-18		0.81731355	[0.781339125-0.854944364]	Illumina [8919992] (imputed)	N
1863	chr6	167548546	167548547	rs62436827	24886709	Ko A	2014-06-02	Nat Commun	Amerindian-specific regions under positive selection harbour new lipid variants in Latinos.	Triglycerides	1,678 Mexican ancestry high triglyceride cases, 1,645 Mexican ancestry low triglyceride controls	2,129 Mexican ancestry high triglyceride cases, 2,985 Mexican ancestry low triglyceride controls, 903 Mexican ancestry individuals from 73 dyslipidemic families	6q27	CCR6	rs62436827-G	NR	7E-9		1.49	[1.24-1.78]	Illumina [1661241] (imputed)	N
1863	chr6	167549476	167549477	rs3093009	26031901	Dahlin A	2015-06-02	Pharmacogenomics J	Genome-wide association study of leukotriene modifier response in asthma.	Response to zileuton treatment in asthma (FEV1 change interaction)	160 European and other ancestry zileuton-treated cases, 144 European and other ancestry placebo-controlled cases	149 European and other ancestry zileuton-treated cases, 73 European and other ancestry placebo-controlled cases	6q27	CCR6	rs3093009-?	NR	4E-7	(Additive model)	0.38	unit decrease	Illumina [542562]	N
1863	chr6	167557033	167557034	rs11575088	24133439	Jones RM	2013-10-11	Front Hum Neurosci	Genome-wide association study of autistic-like traits in a general population study of young adults.	Social autistic-like traits	965 European ancestry young adult individuals	NA	6q27	GPR31, CCR6	rs11575088-A		3E-6		1.62	[0.94-2.30] unit increase	Illumina [2462046] (imputed)	N
1863	chr6	167569518	167569519	rs6907629	27611488	Almoguera B	2016-09-09	Am J Respir Crit Care Med	Identification of Four Novel Loci in Asthma in European American and African American Populations.	Asthma (childhood onset)	1,181 African American allergic asthma child cases, 498 African American non-allergic asthma child cases, 2,993 African American child controls, 998 European American allergic asthma child cases, 182 European American non-allergic asthma child cases, 4,097 European American child controls.	NA	6q27	GPR31	rs6907629-?	NR	6E-6		0.192	[0.11-0.27] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1863	chr6	167572541	167572542	rs4710191	25089948	Theusch E	2014-10-01	Pharmacogenet Genomics	Ancestry and other genetic associations with plasma PCSK9 response to simvastatin.	Response to simvastatin treatment (PCSK9 protein level change)	562 European ancestry individuals	287 African American individuals	6q27	GPR31	rs4710191-G	0.433	4E-6	(EA)	0.0854	[NR] unit decrease	Illumina [570422]	N
1863	chr6	167614732	167614733	rs12665391	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6q27	Intergenic	rs12665391-T	0.7521	7E-9	(MTAG)	0.0088	[0.0059-0.0117] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1864	chr6	167672465	167672466	rs6923713	28322283	Chibnik LB	2017-03-21	Mol Psychiatry	Susceptibility to neurofibrillary tangles: role of the PTPRD locus and limited pleiotropy with other neuropathologies.	Neuritic plaque	909 European ancestry individuals	369 individuals	6q27		rs6923713-C	0.92	7E-6	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1864	chr6	167675303	167675304	rs2346160	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental extreme longevity (95 years and older)	1,339 middle-aged British cases, 40,934 middle-aged British controls	NA	6q27	NR	rs2346160-?	NR	3E-6		0.004203	[0.0024-0.006] unit increase	Affymetrix [9658292] (imputed)	N
1864	chr6	167689551	167689552	rs206972	30276832	Edwards AC	2018-10-01	Alcohol Clin Exp Res	Meta-Analysis of Genetic Influences on Initial Alcohol Sensitivity.	Initial alcohol sensitivity	6,039 European ancestry individuals, 892 African ancestry individuals, 408 American ancestry individuals	NA	6q27	UNC93A	rs206972-?	NR	3E-6				Affymetrix, Illumina [15642250] (imputed)	N
1864	chr6	167709232	167709233	rs66559683	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	6q27	UNC93A	rs66559683-G	0.12	7E-33	(N-acetylglucosamine/N-acetylgalactosamine)	0.197	[0.16-0.23] unit increase	Illumina [7750367] (imputed)	N
1864	chr6	167709232	167709233	rs66559683	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	6q27	UNC93A	rs66559683-G	0.12	2E-46	(N-acetylglucosaminylasparagine)	0.271	[0.23-0.31] unit decrease	Illumina [7750367] (imputed)	N
1864	chr6	167712620	167712621	rs2346119	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	6q27	UNC93A	rs2346119-C	0.815901	2E-33	(N-acetylglucosamine/N-acetylgalactosamine)	0.352	[0.3-0.41] unit decrease	Illumina [13039987] (imputed)	N
1864	chr6	167712622	167712623	rs2346120	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	6q27	UNC93A	rs2346120-C	0.815901	4E-49	(N-acetylglucosaminylasparagine)	0.419	[0.36-0.47] unit increase	Illumina [13039987] (imputed)	N
1864	chr6	167718218	167718219	rs4709161	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	6q27	UNC93A	rs4709161-T	0.659009	3E-17	(N-acetylglucosaminylasparagine)	0.203	[0.16-0.25] unit increase	Illumina [13039987] (imputed)	N
1864	chr6	167718395	167718396	rs13198547	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Skin reflectance (Melanin index)	720 South Asian ancestry individuals		6q27	NR	rs13198547-A	NR	7E-6		0.255861	[0.14-0.37] unit increase	Affymetrix, Illumina [at least 398118] (imputed)	N
1864	chr6	167754974	167754975	rs12528714	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6q27	NR	rs12528714-G	0.991049	8E-6	(IGP67)	2.4277	[1.36-3.49] unit decrease	Illumina [~ 2500000] (imputed)	N
1864	chr6	167765250	167765251	rs3010562	26528553	Davenport ER	2015-11-03	PLoS One	Genome-Wide Association Studies of the Human Gut Microbiota.	Gut microbiome composition (summer and winter)	127 Hutterite individuals	NA	6q27	NR	rs3010562-?		3E-7	(genus_Anaerofilum)	0.6652993	[0.43-0.9] unit increase	Affymetrix [212153]	N
1864	chr6	167770735	167770736	rs2981988	34224794	Wang K	2021-07-02	Prog Neuropsychopharmacol Biol Psychiatry	Genome-wide association study identified INSC gene associated with Trail Making Test Part A and Alzheimer's disease related cognitive phenotypes.	Global cognition (Clinical Dementia Rating Scale Sum of Boxes)	684 European ancestry individuals, 17 Hispanic individuals, 36 African American individuals, 18 individuals	NA	6q27		rs2981988-T	NR	3E-6		0.5318	[0.31-0.75] unit increase	NR [534934]	N
1864	chr6	167770735	167770736	rs2981988	34224794	Wang K	2021-07-02	Prog Neuropsychopharmacol Biol Psychiatry	Genome-wide association study identified INSC gene associated with Trail Making Test Part A and Alzheimer's disease related cognitive phenotypes.	Cognitive impairment level	684 European ancestry individuals, 17 Hispanic individuals, 36 African American individuals, 18 individuals	NA	6q27		rs2981988-T	NR	1E-5		2.446	[1.37-3.52] unit increase	NR [534934]	N
1865	chr6	167774926	167774927	rs7751006	30196971	Bray MJ	2018-09-01	Fertil Steril	Transethnic and race-stratified genome-wide association study of fibroid characteristics in African American and European American women.	Uterine fibroid size (maximum dimension)	1,301 African American or European ancestry female individuals	NA	6q27	TTLL2, TCP10	rs7751006-C	0.73	3E-7		0.07	[0.04-0.10] unit increase	Affymetrix [up to 9596033] (imputed)	N
1865	chr6	167810668	167810669	rs11758597	30265060	MacKillop J	2018-09-27	Exp Clin Psychopharmacol	Genetic influences on delayed reward discounting: A genome-wide prioritized subset approach.	Delayed reward discounting	986 European ancestry individuals	NA	6q27	NR	rs11758597-T	0.101	5E-6		0.335	[0.19-0.48] unit decrease	Illumina [4883968] (imputed)	N
1867	chr6	168098214	168098215	rs536348	29123153	Lee TH	2017-11-09	Sci Rep	A genome-wide association study links small-vessel ischemic stroke to autophagy.	Small vessel stroke	342 Chinese ancestry cases, 1,731 Chinese ancestry control	188 Chinese ancestry cases, 1,265 Chinese ancestry control	6q27	LOC441178, C6orf123	rs536348-C	0.6402	1E-6		1.423	[1.232-1.643]	Affymetrix [552090] (imputed)	N
1867	chr6	168116045	168116046	rs553051	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	6q27		rs553051-?	NR	8E-10				NR [~ 8900000] (imputed)	N
1867	chr6	168127311	168127312	rs528738	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6q27		rs528738-?	NR	1E-13		0.0255882	[0.019-0.032] unit decrease	Affymetrix [20259828] (imputed)	N
1867	chr6	168127311	168127312	rs528738	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	6q27	LOC441178	rs528738-G	0.898481	4E-7	(women)	0.0414775	[0.027-0.056] unit decrease	NR [17166351] (imputed)	N
1867	chr6	168127311	168127312	rs528738	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	6q27	LOC441178	rs528738-G	0.897466	1E-9		0.0350874	[0.024-0.046] unit decrease	NR [17166351] (imputed)	N
1867	chr6	168128170	168128170	rs199528644	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6q27		rs199528644-?	NR	2E-14		0.0264061	[0.02-0.033] unit decrease	Affymetrix [20259828] (imputed)	N
1867	chr6	168136012	168136013	rs2784888	30787463	Escala-Garcia M	2019-02-21	Br J Cancer	Genome-wide association study of germline variants and breast cancer-specific mortality.	Breast cancer specific mortality in breast cancer	7,697 European ancestry cases, 88,964 European ancestry controls	NA	6q27	NR	rs2784888-?	NR	4E-6		1.1000674	[1.06-1.15]	Affymetrix, Illumina [~ 10400000] (imputed)	N
1867	chr6	168138240	168138241	rs10484656	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	6q27	NR	rs10484656-C	NR	1E-11		0.0221	[0.016-0.029] unit decrease	Affymetrix [9000000] (imputed)	N
1867	chr6	168139317	168139318	rs573335	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	6q27	LINC01558	rs573335-C	0.899982	6E-19		0.0271541	[0.021-0.033] unit decrease	NR [13737936] (imputed)	N
1867	chr6	168159171	168159172	rs562290	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	6q27		rs562290-C	NR	4E-17		0.0171	[0.013-0.021] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
1868	chr6	168219088	168219089	rs587150	30787463	Escala-Garcia M	2019-02-21	Br J Cancer	Genome-wide association study of germline variants and breast cancer-specific mortality.	Breast cancer specific mortality in estrogen receptor positive breast cancer	4,116 European ancestry cases, 60,055 European ancestry controls	NA	6q27	NR	rs587150-?	NR	1E-6		1.2127603	[1.12-1.31]	Affymetrix, Illumina [~ 10400000] (imputed)	N
1868	chr6	168245606	168245607	rs34868291	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	6q27	MLLT4	rs34868291-G	0.551544	2E-13		0.01653323	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1868	chr6	168283242	168283243	rs2340902	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	6q27	MLLT4	rs2340902-G	0.547938	7E-9		0.012858969	[0.0085-0.0172] unit decrease	Affymetrix [93095623] (imputed)	N
1868	chr6	168287619	168287620	rs62427705	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Non-albumin protein levels	98,538 Japanese ancestry individuals	NA	6q27	MLLT4	rs62427705-?	NR	8E-9		0.03439	[0.023-0.046] unit increase novel	Illumina [6108953] (imputed)	N
1869	chr6	168316117	168316118	rs3213591	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	6q27	MLLT4	rs3213591-G	0.430395	4E-12		0.015236082	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1869	chr6	168321533	168321534	rs1008456	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	6q27		rs1008456-C	NR	4E-9		0.0107	[0.0072-0.0142] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
1869	chr6	168327928	168327929	rs2268945	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 62)	19,670 European ancestry individuals	NA	6q27		rs2268945-?	NR	3E-8				NR [9705931] (imputed)	N
1869	chr6	168329059	168329060	rs3778663	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	6q27	NR	rs3778663-A	NR	1E-9		0.0285	[0.019-0.038] unit decrease	Affymetrix [9000000] (imputed)	N
1869	chr6	168329922	168329923	rs140154945	31270906	Lai D	2019-07-03	Addict Biol	Genome-wide association studies of the self-rating of effects of ethanol (SRE).	Number of alcoholic drinks required to feel an effect (long-term average)	4,723 European ancestry individuals from 956 families, 1,527 African American individuals from 309 families	306 European ancestry individuals, 169 African American individuals	6q27	AFDN	rs140154945-T	0.68	2E-7	(EA)	0.07176893	[0.046-0.097] unit decrease	Illumina [up to 15464468] (imputed)	N
1869	chr6	168336079	168336080	rs3800533	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	6q27	MLLT4	rs3800533-A	0.392444	2E-10		0.014440685	[0.01-0.0189] unit increase	Affymetrix [93095623] (imputed)	N
1869	chr6	168336079	168336080	rs3800533	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	6q27	NR	rs3800533-G	0.606851	3E-11		0.012917	[0.0091-0.0167] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
1869	chr6	168336079	168336080	rs3800533	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	6q27		rs3800533-?	NR	3E-11				NR [~ 8900000] (imputed)	N
1869	chr6	168339647	168339648	rs9346514	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q27	NR	rs9346514-T	0.599063	2E-10				Affymetrix, Illumina [22063850] (imputed)	N
1869	chr6	168343610	168343611	rs2285248	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	6q27		rs2285248-?	NR	5E-12				NR [~ 8900000] (imputed)	N
1869	chr6	168351107	168351109	rs147217918	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	6q27		rs147217918-T	NR	2E-14		0.0277	[0.021-0.035] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
1869	chr6	168356151	168356152	rs9346633	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	6q27	NR	rs9346633-G	0.428872	3E-10		0.01158	[0.008-0.0152] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
1869	chr6	168358506	168358507	rs2340911	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q27	NR	rs2340911-C	0.507778	3E-13				Affymetrix, Illumina [24332387] (imputed)	N
1869	chr6	168358506	168358507	rs2340911	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	6q27	NR	rs2340911-C	0.428898	5E-14		0.014103	[0.01-0.018] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1869	chr6	168388927	168388928	rs2843012	23319000	Luykx JJ	2013-01-15	Mol Psychiatry	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (5-HIAA)	up to 398 European ancestry individuals	NA	6q27	HGC6.1.1, MLLT4, KIF25, HGC6.3	rs2843012-A	NR	6E-6		0.218	unit increase	Illumina [5767231] (imputed)	N
1869	chr6	168396289	168396290	rs4708620	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6q27		rs4708620-?	NR	2E-17		0.0174377	[0.013-0.022] unit increase	Affymetrix [20259828] (imputed)	N
1869	chr6	168396289	168396290	rs4708620	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	6q27	KIF25-AS1	rs4708620-T	0.624433	5E-8		0.0190821	[0.012-0.026] unit increase	NR [17166351] (imputed)	N
1869	chr6	168397397	168397398	rs181977128	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	6q27	KIF25-AS1	rs181977128-A	NR	1E-6	(AA)			Illumina [up to 11995908] (imputed)	N
1869	chr6	168397397	168397398	rs181977128	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	6q27	KIF25-AS1	rs181977128-A	NR	1E-6				Illumina [up to 11995908] (imputed)	N
1869	chr6	168411159	168411160	rs74928432	33491795	Timmer T	2021-01-25	Vox Sang	Genetic determinants of ferritin, haemoglobin levels and haemoglobin trajectories: results from Donor InSight.	Hemoglobin levels	2,649 European ancestry individuals	NA	6q27	KIF25	rs74928432-T	0.025	5E-6		0.24	[0.13-0.34] unit decrease	Affymetrix [7435577] (imputed)	N
1869	chr6	168420386	168420387	rs79045090	33491795	Timmer T	2021-01-25	Vox Sang	Genetic determinants of ferritin, haemoglobin levels and haemoglobin trajectories: results from Donor InSight.	Hemoglobin levels	2,649 European ancestry individuals	NA	6q27	KIF25	rs79045090-T	0.101	5E-7		0.14	[0.19-0.08] unit decrease	Affymetrix [7435577] (imputed)	N
1870	chr6	168431686	168431687	rs2257743	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	6q27		rs2257743-A	0.17	3E-12		6.97	z score increase	Affymetrix [9061022] (imputed)	N
1870	chr6	168432092	168432093	rs9364386	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	6q27	KIF25	rs9364386-T	0.82483	1E-34		0.0297215	[0.025-0.034] unit increase	NR [13737936] (imputed)	N
1870	chr6	168432466	168432467	rs28585071	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	6q27		rs28585071-?	NR	1E-24				NR [~ 8900000] (imputed)	N
1870	chr6	168432466	168432467	rs28585071	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6q27		rs28585071-?	NR	3E-25		0.0278591	[0.023-0.033] unit increase	Affymetrix [20259828] (imputed)	N
1870	chr6	168434703	168434704	rs146732504	33692975	Buda P	2021-02-22	Front Pediatr	Association Between rs12037447, rs146732504, rs151078858, rs55723436, and rs6094136 Polymorphisms and Kawasaki Disease in the Population of Polish Children.	Kawasaki disease	119 European ancestry cases, 6,071 European ancestry controls	NA	6q27	KIF25	rs146732504-A	0.001494	4E-8		11.42	3.79-34.43	Illumina [164395]	N
1870	chr6	168446652	168446653	rs6900651	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6q27	FRMD1	rs6900651-?	NR	6E-6	(hippuric acid)	0.22492056	[0.13-0.32] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1870	chr6	168479171	168479172	rs73030321	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	6q27		rs73030321-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1870	chr6	168484084	168484085	rs4708431	23527680	Ebejer JL	2013-04-01	Twin Res Hum Genet	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (combined symptoms)	1,851 individuals	155 individuals	6q27	NR	rs4708431-A		7E-6				Illumina [2373249] (imputed)	N
1870	chr6	168486424	168486425	rs7764850	34130359	Curtis SW	2021-06-15	Genet Epidemiol	FAT4 identified as a potential modifier of orofacial cleft laterality.	Left unilateral cleft lip	68 Asian ancestry cases, 78 European ancestry cases, 70 Hispanic cases, 1,626 controls	NA	6q27	NR	rs7764850-?		3E-7		2.3	[1.67-3.15]	Illumina [539473] (imputed)	N
1870	chr6	168490231	168490232	rs9346649	28203683	Heit JA	2017-02-16	Thromb Haemost	Identification of unique venous thromboembolism-susceptibility variants in African-Americans.	Venous thromboembolism adjusted for sickle cell variant rs77121243-T	393 African American cases, 4,941 African American controls.	NR	6q27	FRMD1	rs9346649-?	0.66	6E-6		1.5037593		Affymetrix, Illumina [14074516] (imputed)	N
1870	chr6	168490567	168490568	rs9364220	23527680	Ebejer JL	2013-04-01	Twin Res Hum Genet	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (inattention symptoms)	1,851 individuals	155 individuals	6q27	NR	rs9364220-A		6E-6				Illumina [2373249] (imputed)	N
1870	chr6	168490567	168490568	rs9364220	23527680	Ebejer JL	2013-04-01	Twin Res Hum Genet	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (combined symptoms)	1,851 individuals	155 individuals	6q27	NR	rs9364220-A		7E-6				Illumina [2373249] (imputed)	N
1870	chr6	168511015	168511016	rs1473500	22610502	Kennedy RB	2012-05-19	Hum Genet	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IL-2)	Up to 512 European ancestry individuals, up to 199 African American individuals	NA	6q27	FRMD1	rs1473500-A		3E-7	(EA)			Illumina [NR]	N
1871	chr6	168627865	168627866	rs77504626	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6q27	NR	rs77504626-G	0.0453	4E-9	(TGM2)	0.99	NR unit increase	Illumina [1671387] (imputed)	N
1871	chr6	168686895	168686896	rs2127333	30694715	Sakornsakolpat P	2019-01-29	Am J Respir Cell Mol Biol	Genome-Wide Association Analysis of Single Breath Diffusing Capacity of Carbon Monoxide (DLCO).	Diffusing capacity of carbon monoxide	2,584 European ancestry individuals with chronic obstructive pulmonary disease, 3,002 European ancestry healthy individuals, 343 African American individuals with chronic obstructive pulmonary disease, 1,006 African American healthy individuals	NA	6q27	DACT2, RP11-503C24.3, RP11-503C24.2	rs2127333-A	0.44	5E-6	(EA)	0.09	0.05-0.13 unit decrease	Illumina [NR] (imputed)	N
1872	chr6	168702762	168702763	rs73034306	33491795	Timmer T	2021-01-25	Vox Sang	Genetic determinants of ferritin, haemoglobin levels and haemoglobin trajectories: results from Donor InSight.	Ferritin levels	2,649 European ancestry individuals	NA	6q27	DACT2	rs73034306-A	0.117	9E-6		0.15	[0.09-0.22] unit increase	Affymetrix [7435577] (imputed)	N
1872	chr6	168757110	168757111	rs6915443	23754948	Randall JC	2013-06-06	PLoS Genet	Sex-stratified genome-wide association studies including 270,000 individuals show sexual dimorphism in genetic loci for anthropometric traits.	Sexual dimorphism in anthropometric traits	up to 60,586 European ancestry males, up to 73,137 European ancestry females	up to 62,395 European ancestry males, up to 74,657 European ancestry females	6q27	DACT2	rs6915443-T		3E-6	(WC, men)			Affymetrix, Illumina [2846694] (imputed)	N
1872	chr6	168795355	168795356	rs62423191	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6q27	RP1-39J2.1	rs62423191-G	NR	5E-14		0.0233855	[0.017-0.029] unit decrease	Affymetrix [321016] (imputed)	N
1872	chr6	168795586	168795587	rs76659622	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6q27	RP1-39J2.1	rs76659622-G	NR	2E-12		0.0243392	[0.018-0.031] unit decrease	Affymetrix [321114] (imputed)	N
1872	chr6	168809688	168809689	rs2763257	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6q27	SMOC2	rs2763257-A	NR	5E-12		0.0220036	[0.016-0.028] unit decrease	Affymetrix [321114] (imputed)	N
1872	chr6	168809805	168809806	rs2609301	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6q27	SMOC2	rs2609301-A	NR	2E-8		0.0186197	[0.012-0.025] unit decrease	Affymetrix [321114] (imputed)	N
1872	chr6	168809805	168809806	rs2609301	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6q27	SMOC2	rs2609301-A	NR	6E-17		0.0302991	[0.023-0.037] unit decrease	Affymetrix [321114] (imputed)	N
1872	chr6	168810004	168810005	rs2609304	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6q27	SMOC2	rs2609304-A	NR	4E-9		0.0172386	[0.011-0.023] unit decrease	Affymetrix [321114] (imputed)	N
1872	chr6	168814391	168814392	rs2763263	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	6q27		rs2763263-A	NR	3E-40		0.0257	[0.022-0.029] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1872	chr6	168814391	168814392	rs2763263	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	6q27	intergenic	rs2763263-A	0.2445	1E-14		0.017	[0.013-0.021] unit decrease	Affymetrix [18391927] (imputed)	N
1872	chr6	168814391	168814392	rs2763263	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6q27		rs2763263-?	NR	4E-54				NR [~ 8900000] (imputed)	N
1872	chr6	168814454	168814455	rs2763264	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6q27	SMOC2	rs2763264-G	NR	1E-9		0.0177127	[0.012-0.023] unit decrease	Affymetrix [321016] (imputed)	N
1872	chr6	168814599	168814600	rs2763265	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6q27	SMOC2	rs2763265-G	NR	2E-14		0.0252095	[0.019-0.032] unit decrease	Affymetrix [321016] (imputed)	N
1872	chr6	168814599	168814600	rs2763265	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6q27	NR	rs2763265-?	NR	8E-23				Affymetrix [~ 8270000] (imputed)	N
1872	chr6	168816451	168816452	rs9355211	25628645	Tong Y	2015-01-13	Front Genet	Identification of genetic variants or genes that are associated with Homoharringtonine (HHT) response through a genome-wide association study in human lymphoblastoid cell lines (LCLs).	Response to Homoharringtonine (cytotoxicity)	93 African American ancestry lymphoblastoid cell lines, 91 European ancestry lymphoblastoid cell lines, 94 Han Chinese ancestry lymphoblastoid cell lines	NA	6q27	intergenic	rs9355211-?		7E-7				Affymetrix, Illumina [6750581] (imputed)	N
1872	chr6	168817380	168817381	rs79528632	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6q27	NR	rs79528632-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
1872	chr6	168817463	168817464	rs1924696	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6q27	NR	rs1924696-?	NR	7E-9				Affymetrix [~ 8270000] (imputed)	N
1872	chr6	168819799	168819800	rs751171	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6q27	SMOC2	rs751171-C	NR	6E-9		0.0191888	[0.013-0.026] unit decrease	Affymetrix [321114] (imputed)	N
1872	chr6	168819799	168819800	rs751171	32769997	Zhou W	2020-08-07	Nat Commun	GWAS of thyroid stimulating hormone highlights pleiotropic effects and inverse association with thyroid cancer.	Thyroid stimulating hormone levels	119,715 European ancestry individuals	NA	6q27	DACT2, SMOC2	rs751171-C	0.338264524163865	1E-11		0.033	[0.023-0.043] SD increase	Illumina [22400000] (imputed)	N
1872	chr6	168819799	168819800	rs751171	29855589	Chernus J	2018-05-31	Sci Rep	GWAS reveals loci associated with velopharyngeal dysfunction.	Velopharyngeal dysfunction	54 Hispanic or Latin American and unknown ancestry cases, 922 Hispanic or Latin American and unknown ancestry controls	NA	6q27	NR	rs751171-?	NR	5E-6		0.061399307	[NR] unit decrease	Illumina [at least 269494] (imputed)	N
1872	chr6	168820166	168820167	rs11961675	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6q27	NR	rs11961675-?	NR	4E-9				Affymetrix [~ 8270000] (imputed)	N
1873	chr6	168832090	168832091	rs2763272	30306274	Shah RL	2018-10-10	Hum Genet	Genome-wide association studies for corneal and refractive astigmatism in UK Biobank demonstrate a shared role for myopia susceptibility loci.	Corneal astigmatism	69,140 European ancestry cases, 17,195 European ancestry controls	NA	6q27	SMOC2	rs2763272-C	NR	1E-6		1.0729614	[1.04-1.11]	NR [5921785] (imputed)	N
1873	chr6	168858336	168858337	rs2763277	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6q27	SMOC2	rs2763277-A	NR	3E-9		0.0240711	[0.016-0.032] unit decrease	Affymetrix [321016] (imputed)	N
1873	chr6	168901449	168901450	rs2609330	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6q27	SMOC2	rs2609330-T	NR	4E-8		0.0180144	[0.012-0.024] unit increase	Affymetrix [321114] (imputed)	N
1873	chr6	168901481	168901482	rs73040340	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6q27	SMOC2	rs73040340-T	NR	2E-12		0.0295073	[0.021-0.038] unit decrease	Affymetrix [321114] (imputed)	N
1873	chr6	168911300	168911301	rs2749257	30287806	Zhou H	2018-10-04	Transl Psychiatry	Genome-wide association study identifies glutamate ionotropic receptor GRIA4 as a risk gene for comorbid nicotine dependence and major depression.	Nicotine dependence and major depression (severity of comorbidity)	3,724 African American individuals	NA	6q27	SMOC2	rs2749257-T	0.7432	6E-6		0.5721	[0.32-0.82] unit decrease	Illumina [9520174] (imputed)	N
1873	chr6	168935524	168935525	rs13205533	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Ruminococcus belonging to family Lachnospiraceae)	1,068 Japanese ancestry individuals	NA	6q27	SMOC2	rs13205533-A	0.08	3E-6	(female)	0.356	[0.21-0.5] unit decrease	Illumina [6380737] (imputed)	N
1873	chr6	168935524	168935525	rs13205533	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6q27	NR	rs13205533-?	NR	7E-9				Affymetrix [~ 8270000] (imputed)	N
1873	chr6	168937149	168937150	rs13195338	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6q27	SMOC2	rs13195338-T	NR	3E-8		0.0182848	[0.012-0.025] unit decrease	Affymetrix [321114] (imputed)	N
1873	chr6	168941623	168941624	rs13208776	19890347	Birlea SA	2009-11-05	J Invest Dermatol	Genome-wide association study of generalized vitiligo in an isolated European founder population identifies SMOC2, in close proximity to IDDM8.	Vitiligo	32 Romanian founder cases, 44 European ancestry controls	NA	6q27	SMOC2	rs13208776-?	0.38	9E-8				Illumina [297342]	N
1874	chr6	168972557	168972558	rs192378410	25763902	Draaken M	2015-03-12	PLoS Genet	Genome-wide association study and meta-analysis identify ISL1 as genome-wide significant susceptibility gene for bladder exstrophy.	Classic bladder exstrophy	208 European ancestry cases, 1,703 European ancestry controls	NA	6q27	NR	rs192378410-T	0.025	2E-6		4.11	[2.30-7.35]	Illumina [7261187] (imputed)	N
1874	chr6	169000887	169000888	rs76307059	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6q27		rs76307059-?	NR	5E-23				NR [~ 8900000] (imputed)	N
1874	chr6	169000887	169000888	rs76307059	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	6q27	NR	rs76307059-?	NR	2E-7		0.27427	[0.17-0.38] unit decrease	Affymetrix [7794483] (imputed)	N
1874	chr6	169004018	169004019	rs12530037	31766143	Ortega-Azorin C	2019-11-13	Nutrients	Candidate Gene and Genome-Wide Association Studies for Circulating Leptin Levels Reveal Population and Sex-Specific Associations in High Cardiovascular Risk Mediterranean Subjects.	Circulating leptin levels in high cardiovascular risk	351 Spanish mediterranean ancestry men, 615 Spanish mediterranean ancestry women	NA	6q27	SMOC2	rs12530037-?	0.37	2E-6	(women, model 3)	0.156	NR unit decrease	Illumina [628376]	N
1874	chr6	169016614	169016615	rs4342401	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	6q27	SMOC2	rs4342401-A	0.5392	2E-9		0.1041	[0.07-0.138] unit increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1874	chr6	169020076	169020077	rs117229335	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (hospitalized covid vs population)	613 European ancestry cases, 680,416 European ancestry controls, 140 Hispanic or Latin American cases, 94,327 Hispanic or Latin American controls, 49 Black or African American cases, 22,410 Black or African American controls	NA	6q27		rs117229335-?	NR	6E-6		0.8549121	[0.49-1.22] unit increase	Illumina [9875426] (imputed)	N
1875	chr6	169126551	169126552	rs196477	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6q27		rs196477-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1875	chr6	169211493	169211494	rs5017598	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric bone mineral density (hip)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	6q27	NR	rs5017598-G	0.225	2E-7	(Males)	0.366938	[0.23-0.5] unit decrease	Illumina [~ 6600000] (imputed)	N
1875	chr6	169211493	169211494	rs5017598	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric bone mineral density (femoral neck)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	6q27	NR	rs5017598-G	0.225	1E-7	(Males)	0.353565	[0.22-0.48] unit decrease	Illumina [~ 6600000] (imputed)	N
1876	chr6	169295581	169295582	rs9346486	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	6q27	NR	rs9346486-?	NR	4E-8	(CSF)			NR [9227495] (imputed)	N
1876	chr6	169309753	169309754	rs9364323	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs9364323-G	0.836654	9E-10		0.0718574	[0.048-0.096] decrease	Affymetrix [11014269] (imputed)	N
1876	chr6	169330500	169330501	rs9364190	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	6q27	ENSG00000225879	rs9364190-C	0.205148311282297	1E-6		0.0032499	[NR] unit decrease	Affymetrix [> 30000000] (imputed)	N
1876	chr6	169343601	169343602	rs9364192	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6q27		rs9364192-?	NR	2E-28				NR [~ 8900000] (imputed)	N
1877	chr6	169352785	169352786	rs2474468	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6q27	NR	rs2474468-A	0.07143	1E-8	(PRDX2)	0.5357	NR unit increase	Illumina [1671387] (imputed)	N
1877	chr6	169353249	169353250	rs17523008	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	6q27	SMOC2, LOC101929504	rs17523008-?	NR	5E-10		0.020437522	[0.014-0.027] unit decrease	Illumina [27896057] (imputed)	N
1877	chr6	169362941	169362941	rs763706456	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	6q27	AL109924.1	rs763706456-T	0.3228	3E-14		0.0154	[0.011-0.019] unit decrease	Affymetrix [18391927] (imputed)	N
1877	chr6	169378594	169378595	rs202140881	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	6q27		rs202140881-T	0.232984	1E-9		0.0148696	[0.01-0.02] unit decrease	Illumina [13479295] (imputed)	N
1877	chr6	169421442	169421443	rs11755456	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Medial orbital frontal cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	6q27	NR	rs11755456-?		3E-7				Illumina [4322238] (imputed)	N
1877	chr6	169423661	169423662	rs77982516	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6q27	NR	rs77982516-A	0.0122	3E-8	(SERPINF1)	0.03491	NR unit increase	Illumina [1671387] (imputed)	N
1877	chr6	169423661	169423662	rs77982516	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6q27	NR	rs77982516-A	0.0122	2E-8	(IGHA2)	1.074	NR unit increase	Illumina [1671387] (imputed)	N
1877	chr6	169423661	169423662	rs77982516	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6q27	NR	rs77982516-A	0.0122	2E-17	(IGKC)	5.921	NR unit increase	Illumina [1671387] (imputed)	N
1877	chr6	169428451	169428452	rs866743	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	6q27	Intergenic	rs866743-T	0.383	3E-6	(AA)	0.015	unit decrease	Illumina [NR] (imputed)	N
1877	chr6	169437344	169437345	rs2065415	26265036	Parra EJ	2015-08-12	Pharmacogenomics	Genome-wide association study of warfarin maintenance dose in a Brazilian sample.	Warfarin maintenance dose	180 Brazilian ancestry low dose individuals, 187 Brazilian ancestry high dose individuals	798 European ancestry individuals, 1611 Japanese ancestry individuals, 191 African American individuals	6q27	NR	rs2065415-G	0.889	2E-6	(conditional on rs749671,CYP2C9*2 and CYP2C9*3, Brazilians)	12.913	[NR]	Affymetrix [> 650000] (imputed)	N
1877	chr6	169465079	169465080	rs12529887	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6q27		rs12529887-?	NR	3E-12				NR [~ 8900000] (imputed)	N
1877	chr6	169469706	169469707	rs62435770	27629369	Gao J	2016-09-15	Neuropsychopharmacology	Genome-Wide Association Study of Loneliness Demonstrates a Role for Common Variation.	Loneliness	2,075 European ancestry cases, 3,875 European ancestry controls, 427 African American cases, 398 African American controls, 294 Hispanic cases, 327 Hispanic controls, 57 cases, 73 controls	NA	6q27	SMOC2, LINC01615	rs62435770-?	NR	3E-6	(EA)	0.0567	[0.033-0.08] unit decrease	Illumina [7176022] (imputed)	N
1877	chr6	169470667	169470668	rs62435771	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	6q27	NR	rs62435771-?	NR	4E-10	(CSF)			NR [9227495] (imputed)	N
1878	chr6	169499163	169499164	rs62435801	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	6q27		rs62435801-G	0.15	2E-14		7.65	z score increase	Affymetrix [9061022] (imputed)	N
1878	chr6	169499163	169499164	rs62435801	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	6q27		rs62435801-G	0.15	3E-9		5.92	z score increase	Affymetrix [9061022] (imputed)	N
1878	chr6	169499163	169499164	rs62435801	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	6q27	NR	rs62435801-G	0.1674	6E-9				NR [9056863] (imputed)	N
1878	chr6	169503666	169503667	rs79470819	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	6q27	RP3-495K2.1	rs79470819-A	0.9248	4E-7		0.0922	[0.057-0.128] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1878	chr6	169507557	169507558	rs62434682	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	6q27	NR	rs62434682-G	0.1659	1E-9				NR [9056863] (imputed)	N
1878	chr6	169554726	169554727	rs9294963	32528159	Choquet H	2020-06-11	Commun Biol	A multiethnic genome-wide analysis of 44,039 individuals identifies 41 new loci associated with central corneal thickness.	Central corneal thickness	32,292 European ancestry individuals, 9,623 East Asian ancestry individuals, 1,367 Hispanic/Latino individuals, 757 African American  individuals	NA	6q27	THBS2	rs9294963-?	NA	9E-11		1.54	[1.07-2.01] unit increase	Affymetrix [5541230] (imputed)	N
1878	chr6	169558012	169558013	rs116146467	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	6q27	intergenic	rs116146467-A	0.013	9E-7		5.61	[2.59-12.16]	Illumina [1556551]	N
1878	chr6	169571692	169571693	rs3763267	29234017	Carayol J	2017-12-12	Nat Commun	Protein quantitative trait locus study in obesity during weight-loss identifies a leptin regulator.	Protein levels in obesity	494 European ancestry individuals	NA	6q27	NR	rs3763267-?	NR	6E-8	(TSP2)	0.29	[0.19-0.39] unit increase	Illumina [4020654] (imputed)	N
1878	chr6	169571692	169571693	rs3763267	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6q27	RP11-417E7.1, RP11-417E7.2	rs3763267-C	0.1061368	9E-19	(EA, Thrombospondin-2)	0.6074	[0.48-0.74] unit increase	Affymetrix [509946]	N
1878	chr6	169585450	169585451	rs114413935	29206233	Shendre A	2017-12-04	PLoS One	Genome-wide admixture and association study of subclinical atherosclerosis in the Women's Interagency HIV Study (WIHS).	Common carotid intima-media thickness in HIV negative individuals	288 Black non-Hispanic HIV-negative women	NA	6q27	LOC101929504, THBS2	rs114413935-T	NR	2E-6		0.02957	[NR] unit increase	Illumina [1124301]	N
1878	chr6	169587102	169587103	rs1322639	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Diastolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	6q27	intergenic	rs1322639-G	0.6172	9E-17		0.2352	[0.18-0.29] mmHg decrease	Affymetrix [NR] (imputed)	N
1878	chr6	169587102	169587103	rs1322639	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Pulse pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	6q27	THBS2	rs1322639-A	0.78	5E-17		0.316	[0.24-0.39] unit increase	Affymetrix [~ 9800000] (imputed)	N
1878	chr6	169587102	169587103	rs1322639	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	6q27	SMOC2, THBS2	rs1322639-G		8E-11		0.273	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1878	chr6	169587102	169587103	rs1322639	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	6q27	SMOC2, THBS2	rs1322639-G		3E-10	(EA)	0.305	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1878	chr6	169587102	169587103	rs1322639	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	6q27	SMOC2, THBS2	rs1322639-G		1E-23		0.302	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1878	chr6	169592272	169592272	rs533414974	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	6q27	intergenic	rs533414974-TG	0.7731	4E-31		0.3604	[0.3-0.42] mmHg increase	Affymetrix [NR] (imputed)	N
1878	chr6	169592273	169592273	rs201726345	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	6q27		rs201726345-TG	NR	1E-28		0.0299	[0.025-0.035] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
1878	chr6	169592273	169592273	rs201726345	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	6q27		rs201726345-TG	NR	3E-9		0.0178	[0.012-0.024] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1878	chr6	169592918	169592919	rs9505943	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	6q27		rs9505943-T	0.36	1E-8		5.69	z score increase	Affymetrix [9061022] (imputed)	N
1878	chr6	169599943	169599944	rs12665054	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6q27	NR	rs12665054-A	0.214	2E-25	(Thrombospondin-2, THBS2.3339.33.1)	0.32	[0.26-0.38] unit decrease	Affymetrix [10572788] (imputed)	N
1878	chr6	169601043	169601044	rs73041845	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein THBS2	5,367 Icelandic ancestry individuals	NA	6q27		rs73041845-T	0.1366	8E-85		0.517219	[0.47-0.57] unit increase	Illumina [7506463] (imputed)	N
1878	chr6	169601043	169601044	rs73041845	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6q27	THBS2	rs73041845-C	0.86515625	7E-54	(THBS2, 3339_33_1)	0.54065865	[0.47-0.61] unit decrease	Illumina [> 1000000] (imputed)	N
1879	chr6	169616096	169616097	rs3252	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	6q27		rs3252-?	NR	2E-14				NR [~ 8900000] (imputed)	N
1879	chr6	169616111	169616112	rs3253	33888516	Zheng T	2021-04-22	Gut	Genome-wide analysis of 944 133 individuals provides insights into the etiology of haemorrhoidal disease.	Haemorrhoidal disease	218,920 European ancestry cases, 725,213 European ancestry controls	NA	6q27	THBS2	rs3253-?	0.3202	5E-12		1.03	[1.02-1.04]	Affymetrix, Illumina [8494288] (imputed)	N
1879	chr6	169616111	169616112	rs3253	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	6q27		rs3253-?	NR	1E-17				NR [~ 8900000] (imputed)	N
1879	chr6	169616346	169616347	rs1040	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Joint mobility (Beighton score)	64,143 European ancestry individuals	NA	6q27	THBS2	rs1040-?	NR	3E-7		0.057	[0.078-0.035] unit decrease	Illumina [12039492] (imputed)	N
1879	chr6	169624899	169624900	rs73043857	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6q27	THBS2	rs73043857-G	0.102	7E-99	(Thrombospondin-2, THBS2.3339.33.1)	0.81	[0.73-0.89] unit increase	Affymetrix [10572788] (imputed)	N
1879	chr6	169633916	169633917	rs9294978	28322283	Chibnik LB	2017-03-21	Mol Psychiatry	Susceptibility to neurofibrillary tangles: role of the PTPRD locus and limited pleiotropy with other neuropathologies.	Macroscopic brain infarct	327 European ancestry cases, 582 European ancestry controls	369 individuals	6q27	NR	rs9294978-G	0.71	8E-6	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1879	chr6	169642041	169642042	rs202062355	31136621	van de Putte R	2019-05-28	PLoS One	Exome chip association study excluded the involvement of rare coding variants with large effect sizes in the etiology of anorectal malformations.	Anorectal malformation	568 European ancestry cases, 1,860 European ancestry controls	NA	6q27	THBS2	rs202062355-T	0.0	8E-17				Illumina [239042]	N
1879	chr6	169644408	169644408	rs113640408	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	6q27	THBS2	rs113640408-A	0.388449	3E-7		0.008393	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1879	chr6	169644408	169644408	rs113640408	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	6q27	THBS2	rs113640408-A	0.388449	1E-7		0.01056	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1879	chr6	169652391	169652392	rs9717605	28394258	Wild PS	2017-04-10	J Clin Invest	Large-scale genome-wide analysis identifies genetic variants associated with cardiac structure and function.	Left atrial antero-posterior diameter	30,201 European ancestry individuals	NA	6q27	NR	rs9717605-C	0.256	8E-6		0.0194	[0.011-0.028] unit decrease	Affymetrix, Illumina [at least 283291] (imputed)	N
1879	chr6	169663239	169663240	rs12175076	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	6q27		rs12175076-C	NR	4E-8		0.0143	[0.0092-0.0194] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1879	chr6	169668997	169668998	rs7382539	28090565	Tsai EA	2016-05-26	Cell Mol Gastroenterol Hepatol	THBS2 Is a Candidate Modifier of Liver Disease Severity in Alagille Syndrome.	Liver disease severity in Alagille syndrome	97 European ancestry mild cases, 64 European ancestry severe cases	NA	6q27	THBS2	rs7382539-?	NR	2E-6				Illumina [579677]	N
1879	chr6	169720236	169720237	rs9294987	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	6q27		rs9294987-C	NR	2E-11		0.0148	[0.01-0.019] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1879	chr6	169725826	169725827	rs62435247	32117412	Boua PR	2020-02-07	Front Genet	Novel and Known Gene-Smoking Interactions With cIMT Identified as Potential Drivers for Atherosclerosis Risk in West-African Populations of the AWI-Gen Study.	Carotid intima media thickness x smoking interaction	465 West African ancestry male smokers, 1,311 West African ancestry male non-smokers	NA	6q27	THBS2, WDR27	rs62435247-A	NR	2E-6		4.726	NR z score increase	Illumina [7839440] (imputed)	N
1879	chr6	169727600	169727601	rs12190007	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6q27	THBS2	rs12190007-A	0.233	5E-6	(Urinary free epinephrine )	0.03	[NR] nmol/d increase	Illumina [899892]	N
1880	chr6	169820380	169820381	rs438465	23761726	Yazar S	2013-06-06	Mol Vis	Interrogation of the platelet-derived growth factor receptor alpha locus and corneal astigmatism in Australians of Northern European ancestry: results of a genome-wide association study.	Corneal astigmatism	2,784 European ancestry individuals		6q27	NR	rs438465-C	NR	7E-6		0.173	[0.097-0.249] unit decrease	Illumina [~ 2500000] (imputed)	N
1880	chr6	169841072	169841072	rs71554396	28604731	Hammerschlag AR	2017-06-12	Nat Genet	Genome-wide association analysis of insomnia complaints identifies risk genes and genetic overlap with psychiatric and metabolic traits.	Insomnia complaints	12,863 European ancestry male cases, 40,776 European ancestry male controls	1,983 Icelandic ancestry male cases, 1,791 Icelandic ancestry female cases, 2,064 Icelandic ancestry male controls, 1,727 Icelandic ancestry female controls	6q27	intergenic	rs71554396-GT	0.137	8E-8		5.36	z-score increase	Affymetrix [at least 12428592] (imputed)	N
1880	chr6	169848965	169848966	rs147565452	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	6q27	intergenic	rs147565452-?	NR	7E-6		0.273	[0.095-0.451] unit decrease	Illumina [at least 13000000] (imputed)	N
1881	chr6	169876778	169876779	rs62422450	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	6q27		rs62422450-?	NR	6E-11				NR [~ 8900000] (imputed)	N
1881	chr6	169888501	169888502	rs147527958	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (lymphocyte)	21,347 Hispanic or Latin American individuals	NA	6q27		rs147527958-T	0.9978	5E-8		0.7063	[0.45-0.96] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1881	chr6	169910032	169910033	rs12193197	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Endometriosis	645 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6q27	Intergenic	rs12193197-?		9E-6		1.4084507	[1.22-1.64]	Illumina [7645193] (imputed)	N
1881	chr6	169957963	169957964	rs3736712	29921221	Cha S	2018-06-19	BMC Genomics	Identification of five novel genetic loci related to facial morphology by genome-wide association studies.	Eye morphology	5,643 Korean ancestry individuals	1,926 Korean ancestry individuals	6q27	WDR27	rs3736712-C	0.37	8E-10	(Right eye tail length)	0.293	[NR] unit increase	Affymetrix [311944]	N
1881	chr6	169958981	169958982	rs3734905	20041166	Fellay J	2009-12-24	PLoS Genet	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	6q27	NR	rs3734905-?	NR	2E-6	(progression)			Illumina [NR]	N
1881	chr6	169961634	169961635	rs13192566	28604731	Hammerschlag AR	2017-06-12	Nat Genet	Genome-wide association analysis of insomnia complaints identifies risk genes and genetic overlap with psychiatric and metabolic traits.	Insomnia complaints	12,863 European ancestry male cases, 40,776 European ancestry male controls	1,983 Icelandic ancestry male cases, 1,791 Icelandic ancestry female cases, 2,064 Icelandic ancestry male controls, 1,727 Icelandic ancestry female controls	6q27	WDR27	rs13192566-C	0.146	2E-8		5.63	z-score decrease	Affymetrix [at least 12428592] (imputed)	N
1881	chr6	169961634	169961635	rs13192566	27992416	Lane JM	2016-12-19	Nat Genet	Genome-wide association analyses of sleep disturbance traits identify new loci and highlight shared genetics with neuropsychiatric and metabolic traits.	Insomnia	up to 12,674 European ancestry male cases, up to 19,481 European ancestry female cases, up to 16,009 European ancestry male controls, up to 10,964 European ancestry female controls,	NA	6q27	WDR27	rs13192566-G	NR	3E-8	(males)	1.14	[1.09-1.20]	Affymetrix [up to 73355677] (imputed)	N
1881	chr6	169970622	169970623	rs75908454	26776603	Honne K	2016-01-18	Arthritis Res Ther	A longitudinal genome-wide association study of anti-tumor necrosis factor response among Japanese patients with rheumatoid arthritis.	Response to anti-TNF therapy in rheumatoid arthritis	31 Japanese ancestry mild cases, 282 Japanese ancestry moderate cases, 131 Japanese ancestry severe cases	NA	6q27	WDR27	rs75908454-C	0.1	6E-7	(GEE model, response at both 3 and 6 months)	0.42	[0.26-0.59] unit increase	Illumina [4253138] (imputed)	N
1882	chr6	170009779	170009780	rs2473446	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	7,542 Hispanic or Latin American individuals	NA	6q27	NR	rs2473446-G	0.047292	3E-10		0.24842	[0.17-0.33] SD units decrease	Affymetrix, Illumina [25652697] (imputed)	N
1882	chr6	170052857	170052858	rs12527429	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	6q27	NR	rs12527429-?	NR	3E-8				Illumina [7760689] (imputed)	N
1882	chr6	170052964	170052965	rs6459650	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	6q27	NR	rs6459650-C	0.275	1E-8		0.0069716	[0.0046-0.0094] unit increase	NR [9732723] (imputed)	N
1882	chr6	170060332	170060333	rs7744868	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	6q27		rs7744868-A	0.804	1E-9		0.009	[0.007-0.011] unit decrease	NR [NR] (imputed)	N
1882	chr6	170075735	170075736	rs3891969	32131869	Arbeeva L	2020-03-04	J Foot Ankle Res	Genome-wide meta-analysis identified novel variant associated with hallux valgus in Caucasians.	Hallux valgus	1,705 European ancestry female cases, 1,945 European ancestry female controls	NA	6q27	WDR27	rs3891969-A	0.15	2E-6		1.4	[1.22-1.61]	Affymetrix, Illumina [up to 7729175] (imputed)	N
1882	chr6	170076040	170076041	rs6924023	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6q27		rs6924023-A	0.7548	5E-11		0.0107	[0.0076-0.0138] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1882	chr6	170076040	170076041	rs6924023	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6q27	Intergenic	rs6924023-A	0.7548	1E-10	(MTAG)	0.0098	[0.0069-0.0127] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1882	chr6	170109699	170109700	rs7768116	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	6q27		rs7768116-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1882	chr6	170113243	170113244	rs7762018	23400010	Del-Aguila JL	2013-02-12	Pharmacogenomics J	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NA	6q27	IDDM8	rs7762018-A	0.13	8E-6	(EA-glucose response)	3.65	[2.06-5.24] mg/dL increase	Affymetrix, Illumina [> 2000000] (imputed)	N
1883	chr6	170168441	170168442	rs9295024	33768542	Liu Y	2021-03-26	Clin Pharmacol Ther	Class II HLA Variants Associate with Risk of Pegaspargase Hypersensitivity.	Asparaginase hypersensitivity in acute lymphoblastic leukemia	310 African ancestry individuals	NA	6q27	NR	rs9295024-G	NR	8E-6		8.51	[NR]	Illumina [NR] (imputed)	N
1883	chr6	170234375	170234376	rs4716409	33331911	Freidin MB	2020-12-17	Rheumatology (Oxford)	An association between chronic widespread pain and the gut microbiome.	Coprococcus comes	3,521 European or unknown ancestry individuals	NA	6q27		rs4716409-A	NR	9E-6		0.0934	[0.052-0.135] unit decrease	NR [4841651] (imputed)	N
1883	chr6	170239265	170239266	rs6908341	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6q27	TCTE3	rs6908341-?	NR	9E-6	(serotonin)	0.25250146	[0.14-0.36] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1884	chr6	170267972	170267973	rs57717978	30306274	Shah RL	2018-10-10	Hum Genet	Genome-wide association studies for corneal and refractive astigmatism in UK Biobank demonstrate a shared role for myopia susceptibility loci.	Refractive astigmatism	88,005 European ancestry individuals		6q27	LOC101929541	rs57717978-C	0.88	2E-6		0.021	[0.013-0.029] dioptres decrease	NR [5900115] (imputed)	N
1884	chr6	170332620	170332621	rs6940159	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6q27	NR	rs6940159-C	0.6162	3E-7	(EA)	0.033	[0.02-0.046] unit increase	Illumina [~ 11800000] (imputed)	N
1884	chr6	170339226	170339227	rs73790307	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	6q27	NR	rs73790307-?		7E-6				Illumina [4322238] (imputed)	N
1884	chr6	170379024	170379025	rs924043	21980299	Bradfield JP	2011-09-29	PLoS Genet	A genome-wide meta-analysis of six type 1 diabetes cohorts identifies multiple associated loci.	Type 1 diabetes	9,934 European ancestry cases, 16,956 European ancestry controls	1,120 European ancestry affected trios	6q27	WDR27, C6orf120, PHF10, TCTE3, C6orf208, LOC154449, DLL1, FAM120B, PSMB1, TBP, PCD2	rs924043-?	0.85	8E-9		1.35	[NR]	Affymetrix, Illumina [~ 2540000] (imputed)	N
1884	chr6	170379285	170379286	rs9460028	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Skin reflectance (Melanin index)	720 South Asian ancestry individuals		6q27	NR	rs9460028-A	NR	4E-6	(conditioned on rs1426654)	0.409592	[0.24-0.58] unit decrease	Affymetrix, Illumina [at least 398118] (imputed)	N
1885	chr6	170416045	170416046	rs875421	33332786	Zhang Y	2020-12-15	Spine (Phila Pa 1976)	Genome-Wide Association Analysis Across 16,956 Patients Identifies a Novel Genetic Association Between BMP6, NIPAL1, CNGA1 and Spondylosis.	Spondylosis	4,434 European ancestry cases, 9,416 European ancestry controls	NA	6q27	RP11-302L19.1	rs875421-C	NR	5E-6		0.974	[0.963- 0.985]	Illumina [6740241] (imputed)	N
1885	chr6	170418904	170418905	rs7747641	31049640	Chen J	2019-05-02	Diabetologia	Genome-wide association study of type 2 diabetes in Africa.	Type 2 diabetes	2,633 African ancestry cases, 1,714 African ancestry controls	NA	6q27	LINC00574, LOC102724511	rs7747641-C	0.954	5E-6		1.56	[1.29-1.89]	Affymetrix, Illumina [12148595] (imputed)	N
1885	chr6	170425520	170425521	rs10946292	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6q27	LOC154449	rs10946292-G	0.289	3E-6	(Adiponectin )	0.03	[NR] ng/mL increase	Illumina [899892]	N
1885	chr6	170429534	170429535	rs62422590	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	6q27	NR	rs62422590-C	0.180244	4E-10		0.018207904	[0.012-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1885	chr6	170429534	170429535	rs62422590	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6q27	NR	rs62422590-C	0.180244	5E-10		0.018121915	[0.012-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1885	chr6	170431813	170431814	rs3013252	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	6q27		rs3013252-T	0.777226	4E-10		0.016977236	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1885	chr6	170448015	170448016	rs3012455	29891935	Choquet H	2018-06-11	Nat Commun	A multiethnic genome-wide association study of primary open-angle glaucoma identifies novel risk loci.	Glaucoma (primary open-angle)	10,523 European ancestry cases, 203,579 European ancestry controls, 411 Hispanic cases, 4,778 Hispanic controls, 463 East Asian ancestry cases, 4,907 East Asian ancestry controls, 298 African American cases, 1,549 African American controls, 204 South Asian ancestry cases, 4,916 South Asian ancestry controls, 272 African British cases, 4,831 African British controls, 144 mixed ancestry cases, 3,427 mixed ancestry controls	NA	6q27	FAM120B	rs3012455-A	NR	9E-9		1.14	1.09-1.20	Affymetrix [at least 665500] (imputed)	N
1885	chr6	170454914	170454915	rs2935057	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	23,963 European ancestry cases, 306,942 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	43,254 European ancestry cases, 1,471,118 European ancestry controls	6q27	LINC00574, LOC102724511	rs2935057-A	NR	1E-6		0.0521	unit increase	Illumina [15409056] (imputed)	N
1885	chr6	170454914	170454915	rs2935057	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q27	NR	rs2935057-G	0.852989	8E-12				Affymetrix, Illumina [23472807] (imputed)	N
1885	chr6	170454914	170454915	rs2935057	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Glaucoma	11,018 European ancestry cases, 126,068 European ancestry controls	NA	6q27	LOC101929614, LOC105378153	rs2935057-A	NR	8E-10		1.15	[1.11-1.20]	Affymetrix [up to 40000000] (imputed)	N
1885	chr6	170455059	170455060	rs4710758	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	6q27	NR	rs4710758-T	0.318189	4E-16		0.0266678	[0.02-0.033] unit decrease	NR [19129689] (imputed)	N
1885	chr6	170455257	170455258	rs4710703	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	6q27		rs4710703-?	NR	1E-11				NR [~ 8900000] (imputed)	N
1885	chr6	170460911	170460912	rs2935072	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Intraocular pressure	133,492 European ancestry individuals	NA	6q27	LOC154449	rs2935072-C	0.88	6E-9				Affymetrix, Illumina [8002429] (imputed)	N
1885	chr6	170460911	170460912	rs2935072	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Glaucoma	7,947 British ancestry cases, 119,318 British ancestry controls	NA	6q27	LOC154449	rs2935072-T	0.12	2E-9		1.1627907	NR	Affymetrix [at least 8002429] (imputed)	N
1885	chr6	170461770	170461771	rs59020521	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	6q27	DLL1	rs59020521-T	0.877	5E-14		0.148	[0.11-0.19] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1885	chr6	170464366	170464367	rs3013274	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Intraocular pressure	101,939 European ancestry cases	NA	6q27	NR	rs3013274-G		4E-9		0.09	[0.07-0.11] unit increase	NR [NR]	N
1885	chr6	170464366	170464367	rs3013274	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Intraocular pressure	133,492 European ancestry individuals	NA	6q27	LOC154449	rs3013274-?	NR	4E-10		0.0837	[0.057-0.11] unit decrease	Affymetrix, Illumina [up to 40000000] (imputed)	N
1885	chr6	170464366	170464367	rs3013274	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Glaucoma	11,018 European ancestry cases, 126,068 European ancestry controls	NA	6q27	LOC154449	rs3013274-?	NR	3E-7		1.0838288	[1.05-1.12]	Affymetrix [up to 40000000] (imputed)	N
1885	chr6	170475878	170475879	rs138004030	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer (early onset)	6,988 European ancestry cases, 44,256 European ancestry controls	NA	6q27	LOC154449	rs138004030-G	0.91	3E-8		1.27	[1.17-1.38]	Illumina [20370935] (imputed)	N
1885	chr6	170484141	170484142	rs201129973	33204752	Butler-Laporte G	2020-09-24	Open Forum Infect Dis	Genetic Determinants of Antibody-Mediated Immune Responses to Infectious Diseases Agents: A Genome-Wide and HLA Association Study.	Chlamydia trachomatis PorB antibody levels	273 White British ancestry individuals	NA	6q27	RP11, 302L19.1	rs201129973-G	0.981	3E-8		1.74	[1.13-2.35] unit decrease	NR [25472218] (imputed)	N
1885	chr6	170486949	170486950	rs71536939	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6q27	NR	rs71536939-G	0.784528	2E-9		0.01718129	[0.012-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1885	chr6	170489463	170489464	rs3012415	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	6q27	RP11-302L19.3	rs3012415-C	0.17758	2E-16		0.023815846	[0.018-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1885	chr6	170500031	170500032	rs9460075	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	6q27		rs9460075-C	NR	9E-9		0.0172	[0.011-0.023] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
1885	chr6	170507003	170507004	rs6904125	26265036	Parra EJ	2015-08-12	Pharmacogenomics	Genome-wide association study of warfarin maintenance dose in a Brazilian sample.	Warfarin maintenance dose	180 Brazilian ancestry low dose individuals, 187 Brazilian ancestry high dose individuals	798 European ancestry individuals, 1611 Japanese ancestry individuals, 191 African American individuals	6q27	NR	rs6904125-G	0.471	8E-6	(conditional on rs749671,CYP2C9*2 and CYP2C9*3, Brazilians)	5.4945054	[NR]	Affymetrix [> 650000] (imputed)	N
1885	chr6	170517602	170517603	rs9460076	34337005	Duan H	2021-07-17	Biomed Res Int	A Genome-Wide Association Study of Age-Related Hearing Impairment in Middle- and Old-Aged Chinese Twins.	Hearing function (1 kHz)	131 Chinese ancestry dizygotic twin pairs	NA	6q27		rs9460076-?	NR	7E-6				Illumina [1365315]	N
1886	chr6	170545278	170545279	rs3012434	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	6q27		rs3012434-A	0.18	1E-27		10.9	z score increase	Affymetrix [9061022] (imputed)	N
1886	chr6	170545278	170545279	rs3012434	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	6q27		rs3012434-A	0.18	4E-17		8.41	z score increase	Affymetrix [9061022] (imputed)	N
1886	chr6	170545278	170545279	rs3012434	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	6q27		rs3012434-A	0.18	5E-24		10.11	z score increase	Affymetrix [9061022] (imputed)	N
1886	chr6	170545278	170545279	rs3012434	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	6q27	NR	rs3012434-A	0.1838	4E-17				NR [9056863] (imputed)	N
1886	chr6	170545278	170545279	rs3012434	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	6q27	NR	rs3012434-A	0.1838	1E-17				NR [9056863] (imputed)	N
1886	chr6	170545278	170545279	rs3012434	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	6q27	NR	rs3012434-?		7E-13				NR [7428630] (imputed)	N
1886	chr6	170545278	170545279	rs3012434	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	6q27	NR	rs3012434-?	NR	3E-9	(left pericalcarine)			NR [9227495] (imputed)	N
1886	chr6	170546107	170546108	rs6456182	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	6q27	NR	rs6456182-?	NR	2E-8	(left pericalcarine)			NR [9227495] (imputed)	N
1886	chr6	170560957	170560958	rs2103901	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	6q27		rs2103901-C	NR	2E-9		0.0119	[0.008-0.0158] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
1886	chr6	170560957	170560958	rs2103901	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	6q27	RP5-1086L22.1	rs2103901-C	0.61699	8E-10		0.013894921	[0.0095-0.0183] unit decrease	Affymetrix [93095623] (imputed)	N
1886	chr6	170563105	170563106	rs2860300	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	6q27		rs2860300-?	NR	4E-12				NR [~ 8900000] (imputed)	N
1886	chr6	170570684	170570685	rs3012439	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	6q27	NR	rs3012439-C	0.642864	3E-10		0.012727	[0.0088-0.0167] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
1886	chr6	170570684	170570685	rs3012439	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	6q27	NR	rs3012439-C	0.643141	4E-11		0.013375	[0.0094-0.0173] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
1886	chr6	170582063	170582064	rs4710782	29678681	Matana A	2018-04-18	Genomics	Genome-wide meta-analysis identifies novel gender specific loci associated with thyroid antibodies level in Croatians.	Plasma anti-thyroglobulin levels	1,596 Croatian ancestry women, 1,033 Croatian ancestry men	NA	6q27	DLL1	rs4710782-C	NR	6E-8	(women)	0.21	[0.13-0.29] unit increase	Illumina [5527232] (imputed)	N
1886	chr6	170583021	170583022	rs9460100	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	6q27		rs9460100-C	NR	2E-8		0.0136	[0.0089-0.0183] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1886	chr6	170583021	170583022	rs9460100	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	6q27		rs9460100-C	NR	1E-12		0.0166	[0.012-0.021] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
1886	chr6	170583021	170583022	rs9460100	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	6q27		rs9460100-C	NR	5E-12		0.0166	[0.012-0.021] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
1886	chr6	170583021	170583022	rs9460100	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6q27	RP5-894D12.3	rs9460100-C	0.549556	3E-9		0.013182451	[0.0088-0.0175] unit decrease	Affymetrix [93095623] (imputed)	N
1886	chr6	170583021	170583022	rs9460100	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	6q27	RP5-894D12.3	rs9460100-C	0.549793	7E-20		0.020645717	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1886	chr6	170583021	170583022	rs9460100	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	6q27	RP5-894D12.3	rs9460100-C	0.549792	1E-10		0.014573184	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
1886	chr6	170583021	170583022	rs9460100	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	6q27	RP5-894D12.3	rs9460100-T	0.450449	7E-16		0.018047005	[0.014-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1886	chr6	170583021	170583022	rs9460100	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6q27	RP5-894D12.3	rs9460100-C	0.54954	2E-13		0.016405305	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1886	chr6	170586081	170586082	rs2273215	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6q27	NR	rs2273215-A	0.445138	2E-18				Affymetrix, Illumina [23467995] (imputed)	N
1886	chr6	170586081	170586082	rs2273215	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	6q27	NR	rs2273215-A	0.458222	3E-20		0.01813	[0.014-0.022] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1886	chr6	170586081	170586082	rs2273215	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	6q27	NR	rs2273215-A	0.458202	5E-14		0.014956	[0.011-0.019] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1886	chr6	170586081	170586082	rs2273215	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	6q27	FLJ38122	rs2273215-G	NR	3E-6		1.076774	NR	Affymetrix, Illumina [8278136] (imputed)	N
1886	chr6	170586081	170586082	rs2273215	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	6q27		rs2273215-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1886	chr6	170588558	170588559	rs2344744	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	6q27	NR	rs2344744-G	0.41468099999999997	1E-9		0.0178199	[0.012-0.023] unit increase	Affymetrix [16580851] (imputed)	N
1886	chr6	170588653	170588654	rs959025	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6q27	DLL1	rs959025-T	0.416	1E-14	(Delta-like protein 1, DLL1.5349.69.3)	0.19	[0.15-0.23] unit increase	Affymetrix [10572788] (imputed)	N
1886	chr6	170589802	170589803	rs9356632	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	6q27	intergenic	rs9356632-A	0.1762	7E-14		0.2743	[0.2-0.35] mmHg decrease	Affymetrix [NR] (imputed)	N
1886	chr6	170590474	170590475	rs1028488	25338677	Kariuki SN	2014-10-23	Genes Immun	Genetic analysis of the pathogenic molecular sub-phenotype interferon-alpha identifies multiple novel loci involved in systemic lupus erythematosus.	Interferon alpha levels in systemic lupus erythematosus	88 European ancestry high interferon alpha cases, 322 European ancestry low interferon alpha cases	715 European ancestry cases, 450 African American cases	6q27	LOC154449, DLL1	rs1028488-?	NR	2E-7	(EA)	1.9607843	[1.43-2.63]	Illumina [291943]	N
1886	chr6	170605955	170605956	rs62425620	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	6q27	FAM120B	rs62425620-T	0.367	1E-10		0.0079	[0.0055-0.0103] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
1886	chr6	170621248	170621249	rs9460110	33568662	Dashti HS	2021-02-10	Nat Commun	Genetic determinants of daytime napping and effects on cardiometabolic health.	Daytime nap	452,633 European ancestry individuals	541,333 European ancestry individuals	6q27	FAM120B	rs9460110-C		9E-12		0.0062	[0.0044-0.008] unit increase	Affymetrix [13304133] (imputed)	N
1886	chr6	170622921	170622922	rs6456198	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	6q27		rs6456198-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1886	chr6	170654893	170654894	rs4710716	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Paracentral lobule volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	6q27	FAM120B	rs4710716-?		6E-6				Illumina [4322238] (imputed)	N
1887	chr6	170701830	170701831	rs149215314	29495422	Xu H	2018-02-26	J Pers Med	A Genome-Wide Association Study of Idiopathic Dilated Cardiomyopathy in African Americans.	Idiopathic dilated cardiomyopathy	662 African American cases, 1,138 African American controls	NA	6q27	FAM120B	rs149215314-C	0.024	7E-6		2.09	[1.44-3.02]	Affymetrix [up to 27494467] (imputed)	N
1887	chr6	170725386	170725387	rs760500	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	6q27	NR	rs760500-?	NR	1E-31				Affymetrix [NR]	N
1887	chr6	170732512	170732513	rs9460014	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	6q27	NR	rs9460014-T	0.456205	1E-11		0.013106	[0.0093-0.0169] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1887	chr6	170732512	170732513	rs9460014	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	6q27	NR	rs9460014-T	0.456128	3E-11		0.012829	[0.0091-0.0166] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1888	chr6	170807932	170807933	rs6930789	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PSMB1	5,354 Icelandic ancestry individuals	NA	6q27		rs6930789-T	0.4611	2E-101		0.366753	[0.33-0.4] unit decrease	Illumina [7506463] (imputed)	N
1888	chr6	170850861	170850862	rs756519	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6q27	PSMB1	rs756519-G	0.53078125	8E-67	(PSMB1, 12612_37_3)	0.41207922	[0.37-0.46] unit increase	Illumina [> 1000000] (imputed)	N
1888	chr6	170888889	170888893	rs61380960	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6q27	NR	rs61380960-C	0.01045	2E-8	(CTSD)	3.505	NR unit increase	Illumina [1671387] (imputed)	N
1889	chr6	170919469	170919470	rs12530134	28090653	Liu Y	2017-01-16	Clin Pharmacol Ther	Genome-Wide Study Links PNPLA3 Variant With Elevated Hepatic Transaminase After Acute Lymphoblastic Leukemia Therapy.	Alanine aminotransferase (ALT) levels after remission induction therapy in actute lymphoblastic leukemia (ALL)	up to 488 European ancestry cases, up to 111 African American cases, up to 60 Hispanic cases, up to 56 other ancestry cases	NA	6q27	PDCD2	rs12530134-A		4E-6		1.36	[1.03-1.80]	Affymetrix, Illumina [NR] (imputed)	N
585	chr6_apd_hap1	168	169	rs150814685	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma and major depressive disorder	46,802 European ancestry asthma cases, 59,851 European ancestry major depressive disorder cases, 460,635 European ancestry controls	NA	6p22.1	C6orf100, GPX5, GPX6, HCG14, LOC401242, NKAPL, OR2B3, OR2J2, OR2J3, OR2W1, TRIM27, ZBED9, ZKSCAN3, ZKSCAN4, ZNF311, ZSCAN12, ZSCAN23, ZSCAN26, ZSCAN31, LOC100129636, PGBD1	rs150814685-?	NR	2E-11				Affymetrix [up to 13554551] (imputed)	N
585	chr6_apd_hap1	1363	1364	rs16894234	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6p22.1	NR	rs16894234-?	NR	3E-12				Affymetrix [~ 8270000] (imputed)	N
585	chr6_apd_hap1	15647	15648	rs1233578	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	RPSAP2	rs1233578-G	NR	2E-8		0.0228089	[0.015-0.031] unit decrease	Affymetrix [323858] (imputed)	N
585	chr6_apd_hap1	15647	15648	rs1233578	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p22.1	NR	rs1233578-G	0.18	4E-9		1.13	[1.08-1.18]	Affymetrix [9886854] (imputed)	N
585	chr6_apd_hap1	15647	15648	rs1233578	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p22.1	NR	rs1233578-G	0.18	4E-14			[NR]	Affymetrix [9886854] (imputed)	N
585	chr6_apd_hap1	15647	15648	rs1233578	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p22.1	NR	rs1233578-G	0.18	2E-11		1.11	[1.08-1.14]	Affymetrix [9886854] (imputed)	N
585	chr6_apd_hap1	15647	15648	rs1233578	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p22.1	NR	rs1233578-G	0.18	8E-14			[NR]	Affymetrix [9886854] (imputed)	N
585	chr6_apd_hap1	15647	15648	rs1233578	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in non-current smokers	16,488 European ancestry cases, 169,688 European ancestry controls	NA	6p22.1	NR	rs1233578-G	0.18	2E-11		1.11	[1.08-1.14]	Affymetrix [9886854] (imputed)	N
585	chr6_apd_hap1	15647	15648	rs1233578	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in never smokers	8,631 European ancestry cases, 120,544 European ancestry controls	NA	6p22.1	NR	rs1233578-G	0.18	3E-9		1.13	[1.09-1.18]	Affymetrix [9886854] (imputed)	N
585	chr6_apd_hap1	15647	15648	rs1233578	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in ever smokers	12,446 European ancestry cases, 59,145 European ancestry controls	NA	6p22.1	NR	rs1233578-G	0.18	3E-7		1.1	[1.06-1.15]	Affymetrix [9886854] (imputed)	N
585	chr6_apd_hap1	15647	15648	rs1233578	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	6p22.1	TRIM27	rs1233578-G	0.18	2E-17				NR [> 9500000] (imputed)	N
585	chr6_apd_hap1	15647	15648	rs1233578	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	6p22.1	TRIM27	rs1233578-G	0.17936300000000005	4E-12		1.0560242	[1.03991341766738-1.07238465256811]	NR [9572556] (imputed)	N
585	chr6_apd_hap1	15647	15648	rs1233578	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	6p22.1	NR	rs1233578-A	NR	1E-9		6.098	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
585	chr6_apd_hap1	15647	15648	rs1233578	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	RPSAP2	rs1233578-A	NR	5E-12		6.899	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
585	chr6_apd_hap1	15647	15648	rs1233578	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls, 2,149 African ancestry cases, 6,055 African ancestry controls, 1,239 Japanese ancestry cases, 3,976 Japanese ancestry controls, 606 Latino cases, 792 Latino controls	NA	6p22.1	GPX5, TRIM27	rs1233578-G	0.13	6E-7		1.09	[1.05-1.12]	Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
585	chr6_apd_hap1	15647	15648	rs1233578	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls	NA	6p22.1	GPX5, TRIM27	rs1233578-G	0.13	5E-9		0.1	[0.061-0.139] unit increase	Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
585	chr6_apd_hap1	17351	17353	rs372002372	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs372002372-?		2E-10	(Posterior corona radiata )			NR [8955960] (imputed)	N
585	chr6_apd_hap1	17351	17353	rs372002372	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs372002372-?		1E-11	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
585	chr6_apd_hap1	17351	17353	rs372002372	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs372002372-?		1E-11	(Superior corona radiata)			NR [8955960] (imputed)	N
585	chr6_apd_hap1	17351	17353	rs372002372	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs372002372-?		5E-8	(Average across all tracts)			NR [8955960] (imputed)	N
585	chr6_apd_hap1	17351	17353	rs372002372	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs372002372-?		2E-11	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
585	chr6_apd_hap1	17351	17353	rs372002372	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs372002372-?		2E-10	(Posterior corona radiata )			NR [8955960] (imputed)	N
585	chr6_apd_hap1	18161	18162	rs7763390	33740410	Warrier V	2021-03-16	Lancet Psychiatry	Gene-environment correlations and causal effects of childhood maltreatment on physical and mental health: a genetically informed approach.	Childhood maltreatment	185,414 European ancestry individuals	NA	6p22.1	NR	rs7763390-A	0.84	7E-9		0.027	[0.017-0.037] unit decrease	Affymetrix, Illumina [at least 500527] (imputed)	N
585	chr6_apd_hap1	23155	23156	rs1233587	32358547	Persyn E	2020-05-01	Nat Commun	Genome-wide association study of MRI markers of cerebral small vessel disease in 42,310 participants.	White matter integrity (mean diffusivity)	17,467 European ancestry individuals	NA	6p22.1	ZFP57	rs1233587-T	0.295257	6E-12		0.325855	[0.23-0.42] unit decrease	Affymetrix [NR] (imputed)	N
585	chr6_apd_hap1	23155	23156	rs1233587	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs1233587-?		2E-8	(Anterior corona radiata)			NR [8955960] (imputed)	N
585	chr6_apd_hap1	24934	24935	rs1742741	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs1742741-?		4E-9	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
585	chr6_apd_hap1	24934	24935	rs1742741	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs1742741-?		8E-9	(Retrolenticular part of internal capsule)			NR [8955960] (imputed)	N
585	chr6_apd_hap1	24934	24935	rs1742741	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	6p22.1	NR	rs1742741-?		2E-8	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
585	chr6_apd_hap1	24934	24935	rs1742741	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	6p22.1	NR	rs1742741-?		2E-8	(Average across all tracts)			NR [8955960] (imputed)	N
585	chr6_apd_hap1	27088	27089	rs568609045	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium HDL	115,082 European ancestry individuals	NA	6p22.1		rs568609045-G	0.908816	1E-8		0.0550229	[0.036-0.074] unit increase	NR [11722792] (imputed)	N
585	chr6_apd_hap1	27088	27089	rs568609045	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large HDL	115,082 European ancestry individuals	NA	6p22.1		rs568609045-G	0.908816	4E-9		0.0550531	[0.037-0.073] unit increase	NR [11722792] (imputed)	N
585	chr6_apd_hap1	27088	27089	rs568609045	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in HDL	115,082 European ancestry individuals	NA	6p22.1		rs568609045-G	0.908816	4E-8		0.052683	[0.034-0.071] unit increase	NR [11722792] (imputed)	N
585	chr6_apd_hap1	28400	28400	rs71548373	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	6p22.1	intergenic	rs71548373-?	NR	6E-13		0.0283	[0.021-0.035] unit decrease	Affymetrix [5701386] (imputed)	N
585	chr6_apd_hap1	30993	30994	rs1233595	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs1233595-?		2E-9	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
585	chr6_apd_hap1	30993	30994	rs1233595	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs1233595-?		1E-9	(Average across all tracts)			NR [8955960] (imputed)	N
585	chr6_apd_hap1	30993	30994	rs1233595	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs1233595-?		4E-9	(Average across all tracts)			NR [8955960] (imputed)	N
585	chr6_apd_hap1	30993	30994	rs1233595	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs1233595-?		3E-9	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
585	chr6_apd_hap1	38076	38077	rs1233604	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p22.1	AL662890.1	rs1233604-A	NR	4E-8		0.0237945	[0.015-0.032] unit decrease	Affymetrix [319769] (imputed)	N
585	chr6_apd_hap1	40373	40374	rs9257158	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p22.1	AL662890.1	rs9257158-G	NR	1E-8		0.0194989	[0.013-0.026] unit decrease	Affymetrix [323123] (imputed)	N
585	chr6_apd_hap1	68374	68375	rs9257190	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p22.1	AL662890.3	rs9257190-G	NR	2E-10		0.0253484	[0.018-0.033] unit decrease	Affymetrix [323858] (imputed)	N
585	chr6_apd_hap1	69760	69760	rs202065757	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p22.1	NR	rs202065757-?	NR	3E-6		0.1767	[0.1-0.25] unit increase	Illumina [at least 560000] (imputed)	N
585	chr6_apd_hap1	71527	71528	rs141456208	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs141456208-?		4E-6		1.75	[1.38-2.23]	Illumina [7645193] (imputed)	N
585	chr6_apd_hap1	74083	74084	rs7739915	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p22.1		rs7739915-G	0.829881	3E-8		0.0298334	[0.019-0.04] unit decrease	NR [11722792] (imputed)	N
585	chr6_apd_hap1	74598	74599	rs2013652	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p22.1		rs2013652-T	0.605	3E-27				Affymetrix [10369434] (imputed)	N
585	chr6_apd_hap1	79517	79518	rs4324798	19836008	Landi MT	2009-10-15	Am J Hum Genet	A genome-wide association study of lung cancer identifies a region of chromosome 5p15 associated with risk for adenocarcinoma.	Lung adenocarcinoma	5,739 European ancestry cases, 5,848 European ancestry controls	7,561 European ancestry cases, 13,818 European ancestry controls	6p22.1	TRNAA-UGC	rs4324798-A	0.09	2E-8		1.16	[1.09-1.24]	Illumina [515922]	N
585	chr6_apd_hap1	82319	82319	rs142204688	32227112	Lee MA	2020-03-30	Hum Mol Genet	Common variation at 16p11.2 is associated with glycosuria in pregnancy: Findings from a genome-wide association study in European women.	Glycosuria in pregnancy (offspring genotype effect)	747 European ancestry cases, 2,991 European ancestry controls	NA	6p22.1	NR	rs142204688-ATTT	0.024554775	2E-9		3.1145043	[2.74466796-3.4843406]	Illumina [9873828] (imputed)	N
585	chr6_apd_hap1	90593	90594	rs9257226	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6p22.1	XXbac-BPG308K3.5	rs9257226-G	NR	2E-9		0.0237897	[0.016-0.032] unit decrease	Affymetrix [321114] (imputed)	N
585	chr6_apd_hap1	95081	95082	rs67662386	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	6p22.1	NR	rs67662386-?	NR	5E-7		0.135361	[0.082-0.188] unit increase	NR [13958389] (imputed)	N
585	chr6_apd_hap1	95478	95479	rs187766969	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p22.1	NR	rs187766969-?	NR	3E-10		0.1907	[0.13-0.25] unit decrease	Illumina [at least 560000] (imputed)	N
585	chr6_apd_hap1	95877	95878	rs209181	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	XXbac-BPG308K3.5	rs209181-A	NR	3E-15		0.032556	[0.024-0.041] unit decrease	Affymetrix [323858] (imputed)	N
585	chr6_apd_hap1	95877	95878	rs209181	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	XXbac-BPG308K3.5	rs209181-A	NR	4E-15		0.0325128	[0.024-0.041] unit decrease	Affymetrix [127266] (imputed)	N
585	chr6_apd_hap1	97304	97305	rs3118359	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	6p22.1	intergenic	rs3118359-T	0.0838	3E-13		0.0378	[0.028-0.048] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
585	chr6_apd_hap1	99256	99257	rs3135296	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Neuroticism	274,107 British ancestry individuals	NA	6p22.1	NR	rs3135296-?	NR	6E-6		1.0090817	[1.01-1.01]	NR [8968716] (imputed)	N
585	chr6_apd_hap1	99256	99257	rs3135296	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Major depressive disorder (lifetime)	16,301 British ancestry cases, 50,870 British ancestry controls	NA	6p22.1	NR	rs3135296-?	NR	5E-7		1.1049724	[1.06-1.15]	NR [5276842] (imputed)	N
585	chr6_apd_hap1	99256	99257	rs3135296	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Help-seeking from a GP (without major depressive disorder symptoms)	8,632 British ancestry cases, 49,493 British ancestry controls	NA	6p22.1	NR	rs3135296-?	NR	1E-6		1.1350738	[1.08-1.19]	NR [5276842] (imputed)	N
585	chr6_apd_hap1	99256	99257	rs3135296	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Help-seeking from a GP	113,262 British ancestry cases, 219,360 British ancestry controls	NA	6p22.1	NR	rs3135296-A	0.88	4E-12		1.0570824	[1.04-1.07]	NR [5276842] (imputed)	N
585	chr6_apd_hap1	99471	99472	rs3131337	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	6p22.1	TRIM27	rs3131337-G	0.871891	1E-14		0.0229188	[0.017-0.029] unit increase	Affymetrix [NR] (imputed)	N
585	chr6_apd_hap1	99471	99472	rs3131337	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	6p22.1	NR	rs3131337-?	NR	7E-6		0.0811	[0.046-0.116] unit decrease	Illumina [at least 560000] (imputed)	N
585	chr6_apd_hap1	99860	99861	rs3132379	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	XXbac-BPG308K3.5	rs3132379-T	NR	1E-8		0.0232897	[0.015-0.031] unit decrease	Affymetrix [323858] (imputed)	N
585	chr6_apd_hap1	99860	99861	rs3132379	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	XXbac-BPG308K3.5	rs3132379-T	NR	2E-8		0.0229592	[0.015-0.031] unit decrease	Affymetrix [127266] (imputed)	N
585	chr6_apd_hap1	103410	103411	rs9278091	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA	6p22.1	NR	rs9278091-?	NR	6E-7		0.0586	[0.036-0.082] unit increase	Illumina [at least 560000] (imputed)	N
585	chr6_apd_hap1	103681	103682	rs150548387	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Daytime sleep phenotypes	874 European ancestry individuals	NA	6p22.1	RPL13P, ZNF90P2, HCG14, TRIM27	rs150548387-G	NR	7E-7	(daytime resting)	2.54	[1.54-3.54] unit decrease	Affymetrix [7141204] (imputed)	N
585	chr6_apd_hap1	106691	106692	rs9257248	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p22.1	NR	rs9257248-T	0.114	4E-11		0.0123	[0.0086-0.016] unit decrease	NR [7666894] (imputed)	N
585	chr6_apd_hap1	106691	106692	rs9257248	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p22.1	LOC442181, LOC401242	rs9257248-A	0.217	7E-20				Illumina [118177]	N
585	chr6_apd_hap1	120121	120122	rs561122079	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	6p22.1	XXbac-BPG308K3.5	rs561122079-T	0.0012	5E-6		1.4759	[0.84-2.11] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
585	chr6_apd_hap1	124495	124496	rs9257270	32592749	Butler-Laporte G	2020-06-24	Clin Microbiol Infect	Elevated body-mass index is associated with an increased risk of infectious disease admissions and mortality: a mendelian randomization study.	Sepsis (hospital admission)	4,403 European ancestry cases, 17,612 European ancestry controls	NA	6p22.1	ZFP57	rs9257270-A	0.8	2E-8		0.018	[0.012-0.024] unit increase	NR [NR]	N
586	chr6_apd_hap1	134241	134250	rs71554969	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p22.1	XXbac-BPG308K3.6	rs71554969-C	NR	8E-12		0.0218335	[0.016-0.028] unit decrease	Affymetrix [323123] (imputed)	N
586	chr6_apd_hap1	135011	135012	rs3131336	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	6p22.1	TRIM27	rs3131336-C	0.882895	2E-18		0.019064	[0.015-0.023] unit decrease	Affymetrix [12370749]	N
586	chr6_apd_hap1	136544	136548	rs138792987	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Inguinal hernia	16,725 European ancestry cases, 428,356 European ancestry controls, 1,664 East Asian ancestry cases, 177,062 East Asian ancestry controls	NA	6p22.1		rs138792987-G	NR	8E-11		0.1283	[0.09-0.167] unit decrease	Affymetrix, Illumina [25841416] (imputed)	N
586	chr6_apd_hap1	143308	143309	rs3118365	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	6p22.1	LINC01623	rs3118365-A	0.0924	6E-12		0.0459	[0.033-0.059] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
586	chr6_apd_hap1	143339	143340	rs4484511	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6p22.1	NR	rs4484511-?	NR	7E-14				Affymetrix [~ 8270000] (imputed)	N
586	chr6_apd_hap1	143650	143651	rs113317416	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	XXbac-BPG308K3.6	rs113317416-T	NR	5E-10		0.0278345	[0.019-0.037] unit decrease	Affymetrix [321016] (imputed)	N
586	chr6_apd_hap1	151595	151596	rs146347028	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Fibroblast growth factor basic levels	7,565 Finnish ancestry individuals	NA	6p22.1	NR	rs146347028-C		3E-6		0.2123	[0.12-0.3] SD units decrease	NR [10700000] (imputed)	N
586	chr6_apd_hap1	157459	157460	rs7755875	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	6p22.1	TRIM27	rs7755875-A	0.3193	3E-11		0.002	[0.0014-0.0026] unit increase	Affymetrix [15275733] (imputed)	N
586	chr6_apd_hap1	169019	169019	rs71548400	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6p22.1	HCG14	rs71548400-ATT	NR	4E-9		0.0184951	[0.012-0.025] unit decrease	Affymetrix [321114] (imputed)	N
586	chr6_apd_hap1	169610	169614	rs150164120	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs150164120-?		4E-10	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
586	chr6_apd_hap1	169610	169614	rs150164120	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs150164120-?		2E-10	(Average across all tracts)			NR [8955960] (imputed)	N
586	chr6_apd_hap1	169610	169614	rs150164120	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs150164120-?		1E-9	(Sagittal stratum)			NR [8955960] (imputed)	N
586	chr6_apd_hap1	169769	169769	rs147662640	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs147662640-?		4E-8	(Average across all tracts)			NR [8955960] (imputed)	N
586	chr6_apd_hap1	169769	169769	rs147662640	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs147662640-?		2E-8	(Cingulate gyrus)			NR [8955960] (imputed)	N
586	chr6_apd_hap1	171894	171895	rs3132374	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in diabetes	70,762 European ancestry individuals, 20,967 African American individuals	NA	6p22.1	TRIM27	rs3132374-C	0.916	3E-9		0.959	[0.64-1.27] unit increase	Affymetrix [NR] (imputed)	N
586	chr6_apd_hap1	175846	175847	rs209126	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p22.1	TRIM27	rs209126-T		6E-27		0.023	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
586	chr6_apd_hap1	180647	180648	rs3135293	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hyperthyroidism	3,557 European ancestry cases, 456,942 European ancestry controls, 994 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	6p22.1		rs3135293-C	NR	1E-13		0.329	[0.24-0.42] unit increase	Affymetrix, Illumina [25841580] (imputed)	N
586	chr6_apd_hap1	187551	187552	rs3131099	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Liver iron content	32,858 European ancestry individuals	NA	6p22.1	TRIM27	rs3131099-?	NR	9E-18	(conditional)	0.0654	NR mg/g decrease	Affymetrix [9390170] (imputed)	N
586	chr6_apd_hap1	192816	192817	rs144996521	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	6p22.1	TRIM27	rs144996521-G	0.999717	5E-10		0.148497	[0.1-0.2] unit increase	NR [13737936] (imputed)	N
586	chr6_apd_hap1	196935	196936	rs3131103	31219150	Ekenberg C	2019-06-13	J Infect Dis	Single nucleotide polymorphisms in HLA alleles are associated with HIV-1 viral load in demographically diverse, ART-naive participants from the START trial.	Pre-treatment viral load in HIV-1 infection	1,398 European ancestry individuals, 572 Black individuals, 418 Hispanic individuals, 13 Asian ancestry individuals, 39 individuals	NA	6p22.1	TRIM27	rs3131103-G	0.07	9E-16		0.37	[0.28-0.46] unit decrease	Affymetrix [339439]	N
586	chr6_apd_hap1	198200	198201	rs28400872	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	6p22.1		rs28400872-C	0.340661	5E-11		0.0196364	[0.014-0.025] unit decrease	Illumina [13479924] (imputed)	N
586	chr6_apd_hap1	200176	200177	rs9468445	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p22.1	NR	rs9468445-?	NR	4E-9		0.1617	[0.11-0.21] unit increase	Illumina [at least 560000] (imputed)	N
586	chr6_apd_hap1	200315	200316	rs2015436	26087016	Pappa I	2015-06-18	Am J Med Genet B Neuropsychiatr Genet	A genome-wide approach to children's aggressive behavior: The EAGLE consortium.	Childhood and early adolescence aggressive behavior	18,988 European ancestry individuals	NA	6p22.1	TRIM27	rs2015436-T	0.73	2E-6				Affymetrix, Illumina [up to 3856236] (imputed)	N
586	chr6_apd_hap1	201034	201035	rs1233508	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	6p22.1	TRIM27	rs1233508-T	0.463	2E-16		0.0098	[0.0074-0.0122] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
586	chr6_apd_hap1	201258	201261	rs200822404	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	6p22.1	NR	rs200822404-?	NR	4E-6		0.1076	[0.062-0.153] unit decrease	Illumina [at least 560000] (imputed)	N
586	chr6_apd_hap1	257694	257695	rs3129791	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p22.1	NR	rs3129791-A	0.1148	2E-11		0.0125	[0.0088-0.0162] unit decrease	NR [7666894] (imputed)	N
587	chr6_apd_hap1	268913	268914	rs114357009	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	6p22.1	C6orf100, HCG14, LOC401242, LOC100129636, OR2B3, OR2H1, OR2J2, OR2J3, OR2W1, OR5V1, OR10C1, OR11A1, OR12D2, OR12D3, OR14J1, TRIM27, ZNF311	rs114357009-A	0.049997	2E-10		1.1579555	[1.11-1.2]	Affymetrix [8274727] (imputed)	N
587	chr6_apd_hap1	276939	276940	rs77514138	32227112	Lee MA	2020-03-30	Hum Mol Genet	Common variation at 16p11.2 is associated with glycosuria in pregnancy: Findings from a genome-wide association study in European women.	Glycosuria in pregnancy (offspring genotype effect)	747 European ancestry cases, 2,991 European ancestry controls	NA	6p22.1	NR	rs77514138-T	0.01849013	2E-9		3.6386764	[3.217150999-4.060201879]	Illumina [9873828] (imputed)	N
587	chr6_apd_hap1	284148	284149	rs3130893	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium HDL	115,082 European ancestry individuals	NA	6p22.1		rs3130893-A	0.880989	2E-10		0.037629	[0.026-0.049] unit increase	NR [11722792] (imputed)	N
587	chr6_apd_hap1	284148	284149	rs3130893	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-6 fatty acid levels	115,006 European ancestry individuals	NA	6p22.1		rs3130893-A	0.880993	9E-9		0.0356831	[0.024-0.048] unit increase	NR [11722792] (imputed)	N
587	chr6_apd_hap1	284148	284149	rs3130893	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Linoleic acid levels	115,006 European ancestry individuals	NA	6p22.1		rs3130893-A	0.880993	5E-9		0.0364876	[0.024-0.049] unit increase	NR [11722792] (imputed)	N
587	chr6_apd_hap1	286715	286716	rs3131082	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p22.1	NR	rs3131082-?	NR	2E-7		0.1949	[0.12-0.27] unit decrease	Illumina [at least 560000] (imputed)	N
587	chr6_apd_hap1	288196	288197	rs3129795	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs3129795-?		8E-6		1.0526316	[1.03-1.08]	Illumina [7645193] (imputed)	N
587	chr6_apd_hap1	288196	288197	rs3129795	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs3129795-?		2E-6		1.6129031	[1.32-1.96]	Illumina [7645193] (imputed)	N
587	chr6_apd_hap1	295600	295601	rs3129797	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	6p22.1	ZNF311	rs3129797-C	0.882471	2E-20		0.0273248	[0.022-0.033] unit increase	Affymetrix [NR] (imputed)	N
587	chr6_apd_hap1	361078	361079	rs3129788	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p22.1	OR2B3P, OR2J3	rs3129788-A	0.217	7E-19				Illumina [118177]	N
587	chr6_apd_hap1	365990	365991	rs115166140	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p22.1	NR	rs115166140-?	NR	1E-9		0.1623	[0.11-0.21] unit increase	Illumina [at least 560000] (imputed)	N
587	chr6_apd_hap1	368431	368432	rs4463283	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p22.1	OR2B3, OR2J3	rs4463283-A	0.06	1E-6	(EA)	2.61	[1.74-3.90]	Illumina [up to 547389]	N
587	chr6_apd_hap1	378532	378533	rs3129178	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p22.1	NR	rs3129178-A	0.0951	6E-9	(EA)	0.0669	[0.044-0.089] unit decrease	Illumina [~ 11800000] (imputed)	N
587	chr6_apd_hap1	384597	384598	rs3129106	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p22.1	NR	rs3129106-?	NR	7E-6		0.0757	[0.043-0.109] unit decrease	Illumina [at least 560000] (imputed)	N
587	chr6_apd_hap1	385658	385659	rs115328582	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	OR2J3	rs115328582-G	NR	4E-14		0.033147	[0.025-0.042] unit decrease	Affymetrix [321016] (imputed)	N
587	chr6_apd_hap1	387667	387668	rs3129109	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	6p22.1	OR2J3	rs3129109-T	0.39	2E-17		0.032	[NR] unit decrease	Affymetrix, Illumina [2834208] (imputed)	N
588	chr6_apd_hap1	406295	406296	rs3129119	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129119-?		3E-11	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
588	chr6_apd_hap1	406295	406296	rs3129119	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129119-?		2E-8	(Superior corona radiata)			NR [8955960] (imputed)	N
588	chr6_apd_hap1	406295	406296	rs3129119	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129119-?		2E-11	(Superior corona radiata)			NR [8955960] (imputed)	N
588	chr6_apd_hap1	406295	406296	rs3129119	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129119-?		1E-9	(Retrolenticular part of internal capsule)			NR [8955960] (imputed)	N
588	chr6_apd_hap1	415214	415215	rs3129120	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Major depressive disorder (lifetime)	16,301 British ancestry cases, 50,870 British ancestry controls	NA	6p22.1	NR	rs3129120-?	NR	4E-7		1.1049724	[1.06-1.15]	NR [5276842] (imputed)	N
588	chr6_apd_hap1	415214	415215	rs3129120	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Help-seeking from a psychiatrist	36,286 British ancestry cases, 297,126 British ancestry controls	NA	6p22.1	NR	rs3129120-T	0.876	1E-10		1.081081	NR	NR [5276842] (imputed)	N
588	chr6_apd_hap1	422185	422186	rs3130725	27668658	Iotchkova V	2016-11-01	Nat Genet	Discovery and refinement of genetic loci associated with cardiometabolic risk using dense imputation maps.	Cardiometabolic and hematological traits	up to 35,981 European ancestry individuals	up to 102,505 European ancestry individuals	6p22.1	ZNF311	rs3130725-G		3E-26	(WBC)	0.008	[0.006-0.01] unit decrease	Affymetrix, Illumina [17000000] (imputed)	N
588	chr6_apd_hap1	429937	429938	rs62405961	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	OR2J2	rs62405961-A	NR	2E-8		0.0707669	[0.046-0.095] unit decrease	Affymetrix [321016] (imputed)	N
588	chr6_apd_hap1	433718	433719	rs3129137	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129137-?		3E-8	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
588	chr6_apd_hap1	437084	437085	rs4947263	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p22.1	NR	rs4947263-T	0.1178	3E-12		0.0127	[0.0092-0.0162] unit decrease	NR [7666894] (imputed)	N
588	chr6_apd_hap1	439239	439244	rs369812099	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	6p22.1		rs369812099-T	NR	3E-8		0.0145	[0.0094-0.0196] unit increase	Affymetrix, Illumina [20535873] (imputed)	N
588	chr6_apd_hap1	441757	441758	rs3129151	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	NR	rs3129151-?	NR	7E-8		5.388	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
588	chr6_apd_hap1	442391	442392	rs3130740	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3130740-?		4E-9	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
588	chr6_apd_hap1	445185	445186	rs3129157	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p22.1	OR2J2	rs3129157-A		3E-33		0.068	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
588	chr6_apd_hap1	447982	447983	rs9257566	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	6p22.1	NR	rs9257566-?	NR	7E-30		1.2277772	[1.19-1.26]	Affymetrix, Illumina [12447948] (imputed)	N
589	chr6_apd_hap1	547669	547670	rs144447022	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	6p22.1		rs144447022-?	NR	4E-9				NR [NR]	N
589	chr6_apd_hap1	547669	547670	rs144447022	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	67,764 individuals	NA	6p22.1	NR	rs144447022-?		9E-28				NR [8377093]	N
589	chr6_apd_hap1	547669	547670	rs144447022	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms (MTAG)	955,012 individuals	NA	6p22.1	NR	rs144447022-?		3E-12				NR [520857]	N
589	chr6_apd_hap1	547669	547670	rs144447022	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Bipolar disorder (MTAG)	65,682 individuals	NA	6p22.1	NR	rs144447022-?		7E-20				NR [520857]	N
589	chr6_apd_hap1	547669	547670	rs144447022	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	6p22.1	XXbac-BPG308J9.3	rs144447022-T	NR	1E-13		0.036134973	[0.027-0.046] unit increase	Affymetrix [NR]	N
589	chr6_apd_hap1	547669	547670	rs144447022	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	6p22.1	NR	rs144447022-G	NR	2E-28		1.25	[NR]	Illumina [7158791] (imputed)	N
589	chr6_apd_hap1	551598	551599	rs3130834	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p22.1	NR	rs3130834-C	0.0955	5E-9	(EA)	0.0672	[0.045-0.09] unit decrease	Illumina [~ 11800000] (imputed)	N
589	chr6_apd_hap1	552014	552014	rs5875188	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p22.1	OR2J2, OR14J1	rs5875188-?	0.06	7E-6	(EA)	2.52	[1.66-3.83]	Illumina [up to 547389]	N
589	chr6_apd_hap1	556207	556208	rs116466121	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	6p22.1	Intergenic	rs116466121-A	0.8753	8E-9	(MTAG)	0.0156	[0.01-0.021] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
589	chr6_apd_hap1	556207	556208	rs116466121	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	6p22.1	Intergenic	rs116466121-A	0.8759	2E-12	(MTAG)	0.0177	[0.013-0.023] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
589	chr6_apd_hap1	558431	558432	rs9257681	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p22.1	NR	rs9257681-G	0.1151	2E-12		0.0131	[0.0094-0.0168] unit decrease	NR [7666894] (imputed)	N
589	chr6_apd_hap1	559888	559889	rs1884123	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	6p22.1	OR14J1	rs1884123-A	0.3614	3E-8		0.011205866	[0.0072-0.0152] unit decrease	Illumina [9339358] (imputed)	N
589	chr6_apd_hap1	561435	561436	rs1033568	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA		NR	rs1033568-A	0.429	1E-6		1.081	[1.05-1.11]	Illumina [11270530] (imputed)	N
589	chr6_apd_hap1	563899	563900	rs3117425	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	6p22.1	NR	rs3117425-T	NR	2E-8		0.02019	[0.013-0.027] unit decrease	Affymetrix [10847151] (imputed)	N
589	chr6_apd_hap1	563899	563900	rs3117425	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling nervous	373,121 European ancestry individuals	NA	6p22.1	ZNF391	rs3117425-T	0.119369	5E-8		5.47	z score decrease	NR [10847151] (imputed)	N
589	chr6_apd_hap1	575494	575495	rs3117426	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3117426-?		4E-10	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
589	chr6_apd_hap1	575494	575495	rs3117426	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3117426-?		2E-8	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
589	chr6_apd_hap1	575494	575495	rs3117426	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3117426-?		1E-9	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
589	chr6_apd_hap1	575494	575495	rs3117426	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3117426-?		4E-8	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
589	chr6_apd_hap1	577618	577619	rs3117427	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Receptor for advanced glycosylation end products levels	21,758 European ancestry individuals	9,173 individuals	6p22.1		rs3117427-T	0.9	2E-11		0.0988	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
589	chr6_apd_hap1	578710	578711	rs61735224	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p22.1	NR	rs61735224-T	0.01045	2E-8	(SBDS)	0.06239	NR unit increase	Illumina [1671387] (imputed)	N
589	chr6_apd_hap1	587155	587156	rs3129682	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p22.1	GABBR1, OR12D3, XXbac-BPG308K3.5, TRIM27, AL662791.1, OR2AD1P, OR2P1P, OR2B3, XXbac-BCX196D17.5, OR2N1P, OR2H4P, OR2B4P, XXbac-BPG308K3.6, RPL13P, ZNF90P2, HCG14, RNU6-930P, LINC01556, KRT18P1, RN7SL471P, HCG15, HCG16, ZNF311, XXbac-BPG258E24.10, OR2W1, SAR1P1, OR2J3, OR2J4P, OR2J2, AL645937.1, XXbac-BPG308J9.3, OR2U2P, OR14J1, OR5V1, OR10C1, OR11A1, XXbac-BPG13B8.11, OR2H1, UBDP1, MAS1LP1, MAS1L, RPS17P1, XXbac-BPG13B8.10, OR2I1P, UBD	rs3129682-T	0.07742915	1E-19	(EA, MHC class I polypeptide-related sequence B)	0.7369	[0.58-0.89] unit decrease	Affymetrix [509946]	N
589	chr6_apd_hap1	587444	587444	rs201452814	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-17 levels	7,760 Finnish ancestry individuals	NA	6p22.1	NR	rs201452814-GT		4E-6		0.2398	[0.14-0.34] SD units increase	NR [10700000] (imputed)	N
589	chr6_apd_hap1	587444	587444	rs201452814	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Fibroblast growth factor basic levels	7,565 Finnish ancestry individuals	NA	6p22.1	NR	rs201452814-GT		4E-6		0.242	[0.14-0.34] SD units increase	NR [10700000] (imputed)	N
590	chr6_apd_hap1	700354	700355	rs3128851	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	OR5V1, OR11A1	rs3128851-T	NR	9E-12		0.0207103	[0.015-0.027] unit decrease	Affymetrix [321016] (imputed)	N
590	chr6_apd_hap1	702418	702419	rs3117191	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	6p22.1	Intergenic	rs3117191-T	NR	2E-6		0.022413	[0.013-0.032] unit decrease	Illumina [13520550] (imputed)	N
590	chr6_apd_hap1	709368	709369	rs55740552	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p22.1	NR	rs55740552-?	NR	1E-10		0.1637	[0.11-0.21] unit decrease	Illumina [at least 560000] (imputed)	N
590	chr6_apd_hap1	711570	711571	rs17177632	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	6p22.1		rs17177632-?	NR	5E-8				Affymetrix [NR] (imputed)	N
590	chr6_apd_hap1	711570	711571	rs17177632	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p22.1		rs17177632-A	0.988	2E-8				Affymetrix [10369434] (imputed)	N
590	chr6_apd_hap1	716483	716484	rs2023463	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in diabetes	70,762 European ancestry individuals, 20,967 African American individuals	NA	6p22.1	6M1-18	rs2023463-T	0.092	1E-11		1.01	[0.72-1.3] unit decrease	Affymetrix [NR] (imputed)	N
590	chr6_apd_hap1	718944	718945	rs2523443	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p22.1	NR	rs2523443-A	0.1188	1E-12		0.013	[0.0095-0.0165] unit decrease	NR [7666894] (imputed)	N
590	chr6_apd_hap1	735650	735651	rs2143668	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	6p22.1	OR2H1	rs2143668-A	0.8962	1E-7	(EA)	0.0033	[0.0021-0.0045] unit increase	Affymetrix [NR] (imputed)	N
590	chr6_apd_hap1	735650	735651	rs2143668	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	6p22.1	OR2H1	rs2143668-A	0.896	1E-9		0.0033	[0.0021-0.0045] unit increase	Affymetrix [NR] (imputed)	N
590	chr6_apd_hap1	737891	737892	rs4713226	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	UBDP1	rs4713226-A	NR	5E-10		0.0303439	[0.021-0.04] unit decrease	Affymetrix [321016] (imputed)	N
590	chr6_apd_hap1	737891	737892	rs4713226	22610502	Kennedy RB	2012-05-19	Hum Genet	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IFN-alpha)	Up to 512 European ancestry individuals, up to 199 African American individuals	NA	6p22.1	OR2H1	rs4713226-A		2E-8	(AA)			Illumina [NR]	N
590	chr6_apd_hap1	746452	746453	rs77454196	33002439	Jin G	2020-10-01	Lancet Oncol	Genetic risk, incident gastric cancer, and healthy lifestyle: a meta-analysis of genome-wide association studies and prospective cohort study.	Gastric cancer	10,254 Han Chinese ancestry cases, 10,914 Han Chinese ancestry controls	NA	6p22.1	NR	rs77454196-A	0.05	3E-6		0.78	NR	Affymetrix, Illumina [6957974] (imputed)	N
590	chr6_apd_hap1	749179	749180	rs72500877	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	349,856 European ancestry individuals, 91,908 East Asian ancestry individuals	NA	6p22.1		rs72500877-T	NR	2E-9		0.0296	[0.02-0.039] unit increase	Affymetrix, Illumina [20529536] (imputed)	N
590	chr6_apd_hap1	761719	761720	rs1233493	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs1233493-?		1E-8	(Superior corona radiata)			NR [8955960] (imputed)	N
590	chr6_apd_hap1	761719	761720	rs1233493	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs1233493-?		3E-9	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
590	chr6_apd_hap1	761719	761720	rs1233493	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in non-diabetics	152,624 European ancestry individuals, 36,369 African American individuals	NA	6p22.1	MAS1L	rs1233493-A	0.89	9E-9		0.481	[0.32-0.65] unit increase	Affymetrix [NR] (imputed)	N
590	chr6_apd_hap1	765208	765209	rs1233491	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p22.1	MAS1L, LOC729653	rs1233491-C	0.23	1E-20				Illumina [118177]	N
590	chr6_apd_hap1	765208	765209	rs1233491	25827949	Kunz M	2015-05-04	Exp Dermatol	Genome-wide association study identifies new susceptibility loci for cutaneous lupus erythematosus.	Cutaneous lupus erythematosus	151 European ancestry cases, 1,288 European ancestry controls	219 European ancestry cases, 262 European ancestry controls	6p22.1	MAS1L	rs1233491-C	0.088	8E-10		2.2	[1.58-3.08]	Affymetrix [906600]	N
590	chr6_apd_hap1	773685	773686	rs1233485	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p22.1		rs1233485-T	0.731	7E-12				Affymetrix [10369434] (imputed)	N
590	chr6_apd_hap1	774462	774463	rs3131019	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	6p22.1		rs3131019-?	NR	5E-8				Affymetrix [NR] (imputed)	N
590	chr6_apd_hap1	780891	780892	rs1233480	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p22.1	NR	rs1233480-T	0.1095	5E-8	(EA)	0.0586	[0.037-0.08] unit decrease	Illumina [~ 11800000] (imputed)	N
590	chr6_apd_hap1	783701	783702	rs385816	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p22.1	NR	rs385816-?	NR	5E-7		0.0742	[0.045-0.103] unit increase	Illumina [at least 560000] (imputed)	N
591	chr6_apd_hap1	790766	790767	rs2523430	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p22.1		rs2523430-G	0.513	3E-9				Affymetrix [10369434] (imputed)	N
591	chr6_apd_hap1	791452	791453	rs12210150	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	153,512 East Asian ancestry individuals	NA	6p22.1		rs12210150-T	0.038389	1E-12		0.0584816	[0.042-0.075] unit increase	Illumina [13479135] (imputed)	N
591	chr6_apd_hap1	814114	814115	rs362538	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	6p22.1		rs362538-G	0.902	2E-109		0.4	[-0.44--0.36] % decrease	Affymetrix [NR] (imputed)	N
591	chr6_apd_hap1	814114	814115	rs362538	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular hemoglobin	20,714 Amish, White ancestry individuals, 447 Asian ancestry individuals, 11,246 Black individuals, 13,834 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	6p22.1		rs362538-C	NR	3E-10		0.2	[0.14-0.26] unit increase	Illumina [94681438]	N
591	chr6_apd_hap1	819288	819289	rs3094575	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	OR2I1P	rs3094575-T	NR	2E-8		0.0185304	[0.012-0.025] unit decrease	Affymetrix [321016] (imputed)	N
591	chr6_apd_hap1	823336	823337	rs453658	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	121,047 East Asian ancestry individuals	NA	6p22.1	NR	rs453658-G	0.306783	4E-12		0.030549	[0.022-0.039] SD units decrease	Affymetrix, Illumina [16286195] (imputed)	N
591	chr6_apd_hap1	824387	824388	rs16895057	23456168	Hao Y	2013-03-03	Hum Genet	Genome-wide association study in Han Chinese identifies three novel loci for human height.	Height	6,534 Han Chinese ancestry individuals	1,881 Han Chinese ancestry individuals from 637 families	6p22.1	OR2I1P	rs16895057-T	0.95	3E-6		0.153	[0.088-0.218] unit increase	Affymetrix [1532051] (imputed)	N
591	chr6_apd_hap1	824829	824830	rs11724	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	6p22.1		rs11724-G	0.692447	2E-8		0.0220867	[0.014-0.03] unit increase	Illumina [13476299] (imputed)	N
591	chr6_apd_hap1	827187	827188	rs8337	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p22.1	UBD	rs8337-C		1E-19		0.022	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
591	chr6_apd_hap1	829889	829890	rs11970475	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	6p22.1	UBD	rs11970475-A	0.19	2E-24		0.07	[0.054-0.086] unit increase	Affymetrix, Illumina [2704730] (imputed)	N
591	chr6_apd_hap1	834456	834457	rs422878	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	GABBR1	rs422878-T	NR	1E-8		0.0205792	[0.014-0.028] unit decrease	Affymetrix [321016] (imputed)	N
591	chr6_apd_hap1	834456	834457	rs422878	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	6p22.1	UBD, OR2H2	rs422878-C	0.81	1E-8		5.72	z-score increase	Affymetrix [4311822] (imputed)	N
591	chr6_apd_hap1	834486	834487	rs115070292	27922604	Yu H	2016-12-06	Mol Psychiatry	Common variants on 2p16.1, 6p22.1 and 10q24.32 are associated with schizophrenia in Han Chinese population.	Schizophrenia	4,384 Han Chinese ancestry cases and 5,770 Han Chinese ancestry controls	4,339 Han Chinese ancestry cases and 7,043 Han Chinese ancestry controls	6p22.1	GABBR1	rs115070292-?		5E-10		1.3	[1.22-1.38]	Illumina [at least 473583] (imputed)	N
591	chr6_apd_hap1	838119	838120	rs413082	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	GABBR1	rs413082-A	NR	3E-8		0.0199613	[0.013-0.027] unit decrease	Affymetrix [321016] (imputed)	N
591	chr6_apd_hap1	841719	841720	rs142818680	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mumps	31,227 European ancestry cases, 54,153 European ancestry controls	NA	6p22.1	NR	rs142818680-?	NR	7E-12		0.5892	[0.42-0.76] unit decrease	Illumina [at least 560000] (imputed)	N
591	chr6_apd_hap1	843275	843276	rs3025652	31272903	Sunadome H	2019-07-01	Allergol Int	Correlation between eosinophil count, its genetic background and body mass index: The Nagahama Study.	Eosinophil counts	4,650 East Asian ancestry individuals	NA	6p22.1	NR	rs3025652-A	0.23	4E-7		0.1237	NR unit increase	Illumina [103680] (imputed)	N
591	chr6_apd_hap1	850310	850311	rs1233396	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in HDL	115,082 European ancestry individuals	NA	6p22.1		rs1233396-G	0.861673	7E-10		0.0329165	[0.022-0.043] unit increase	NR [11722792] (imputed)	N
591	chr6_apd_hap1	850310	850311	rs1233396	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium HDL	115,082 European ancestry individuals	NA	6p22.1		rs1233396-G	0.861673	3E-9		0.0327783	[0.022-0.044] unit increase	NR [11722792] (imputed)	N
591	chr6_apd_hap1	851600	851601	rs926552	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	6p22.1	NA	rs926552-G		4E-10		0.0184243	[0.013-0.024] unit increase	Illumina [13288253] (imputed)	N
591	chr6_apd_hap1	851600	851601	rs926552	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Major depressive disorder (lifetime)	16,301 British ancestry cases, 50,870 British ancestry controls	NA	6p22.1	NR	rs926552-G	0.86	4E-8		1.1074197	[1.07-1.14]	NR [5276842] (imputed)	N
591	chr6_apd_hap1	851600	851601	rs926552	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking initiation (ever regular vs never regular)	up to 433,216 European ancestry individuals	NA	6p22.1	SNORD32B	rs926552-A	0.134	1E-8		0.0181	[0.012-0.024] unit decrease	Illumina [~ 250000] (imputed)	N
591	chr6_apd_hap1	851600	851601	rs926552	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Diastolic blood pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	154,543 European ancestry individuals, 26,183 South Asian ancestry individuals	6p22.1	SNORD32B	rs926552-T	0.111	7E-8		0.26	[0.16-0.36] unit decrease	Illumina [247039]	N
591	chr6_apd_hap1	853163	853164	rs1233393	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p22.1	NR	rs1233393-G	0.12	3E-7		1.13	[1.08-1.18]	Affymetrix [9886854] (imputed)	N
591	chr6_apd_hap1	853163	853164	rs1233393	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p22.1	NR	rs1233393-G	0.12	2E-11			[NR]	Affymetrix [9886854] (imputed)	N
591	chr6_apd_hap1	853163	853164	rs1233393	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p22.1	NR	rs1233393-G	0.12	2E-9		1.11	[1.07-1.15]	Affymetrix [9886854] (imputed)	N
591	chr6_apd_hap1	853163	853164	rs1233393	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p22.1	NR	rs1233393-G	0.12	3E-11			[NR]	Affymetrix [9886854] (imputed)	N
591	chr6_apd_hap1	853163	853164	rs1233393	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in non-current smokers	16,488 European ancestry cases, 169,688 European ancestry controls	NA	6p22.1	NR	rs1233393-G	0.12	2E-9		1.11	[1.07-1.15]	Affymetrix [9886854] (imputed)	N
591	chr6_apd_hap1	853163	853164	rs1233393	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in never smokers	8,631 European ancestry cases, 120,544 European ancestry controls	NA	6p22.1	NR	rs1233393-G	0.12	2E-7		1.13	[1.08-1.18]	Affymetrix [9886854] (imputed)	N
591	chr6_apd_hap1	853163	853164	rs1233393	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in ever smokers	12,446 European ancestry cases, 59,145 European ancestry controls	NA	6p22.1	NR	rs1233393-G	0.12	3E-6		1.11	[1.06-1.16]	Affymetrix [9886854] (imputed)	N
591	chr6_apd_hap1	853163	853164	rs1233393	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p22.1	NR	rs1233393-G	0.1223	8E-13		0.0129	[0.0094-0.0164] unit decrease	NR [7666894] (imputed)	N
591	chr6_apd_hap1	854926	854927	rs12524535	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Experiencing mood swings	373,733 European ancestry individuals	NA	6p22.1	TRIM27	rs12524535-A	0.0690112	8E-9		5.77	z score decrease	NR [10847151] (imputed)	N
591	chr6_apd_hap1	859287	859288	rs2235698	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6p22.1		rs2235698-?	NR	2E-7		0.935071	[0.91-0.96]	NR [685523]	N
591	chr6_apd_hap1	859287	859288	rs2235698	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	6p22.1	OR2H2	rs2235698-G	0.23	2E-10		6.36	z-score increase	Affymetrix [4312306] (imputed)	N
591	chr6_apd_hap1	863995	863996	rs3095274	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p22.1		rs3095274-A	0.295	1E-10				Affymetrix [10369434] (imputed)	N
591	chr6_apd_hap1	866579	866580	rs17508548	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	6p22.1	NR	rs17508548-?	NR	1E-8		0.02016	[0.013-0.027] unit increase	Affymetrix [10847151] (imputed)	N
591	chr6_apd_hap1	868303	868304	rs56020557	28440896	Yin X	2017-04-25	Am J Med Genet B Neuropsychiatr Genet	Genome-wide meta-analysis identifies a novel susceptibility signal at CACNA2D3 for nicotine dependence.	Nicotine dependence	7,297 European ancestry cases, 5,577 European ancestry controls, 918 European ancestry whole genome sequenced cases, 921 European ancestry whole genome sequenced controls, African American cases, 1,500 African American controls	NA	6p22.1	GABBR1	rs56020557-T		5E-6	(EA)	0.05	[0.03-0.07] unit increase	Illumina [at least 3251541] (imputed)	N
591	chr6_apd_hap1	868914	868915	rs28893517	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	6p22.1	NR	rs28893517-G	NR	5E-10		0.02848	[0.019-0.037] unit increase	Affymetrix [10847151] (imputed)	N
591	chr6_apd_hap1	869624	869625	rs28986304	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	6p22.1	NR	rs28986304-T	NR	3E-9		5.932	z score decrease	Affymetrix [10847151] (imputed)	N
591	chr6_apd_hap1	869624	869625	rs28986304	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	6p22.1	TRIM27	rs28986304-T	0.126444	8E-10		6.14	z score decrease	NR [10847151] (imputed)	N
591	chr6_apd_hap1	870857	870858	rs28986306	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Depression	at least 5,919 European ancestry cases, at least 130,691 European ancestry controls	634,037 European ancestry cases, 1,308,690 European ancestry controls	6p22.1	GABBR1	rs28986306-C	0.0507	2E-9		0.02608803	[0.016-0.036] unit decrease	NR [9417325] (imputed)	N
591	chr6_apd_hap1	872586	872587	rs362517	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	GABBR1	rs362517-A	NR	1E-10		0.0398451	[0.028-0.052] unit decrease	Affymetrix [321016] (imputed)	N
591	chr6_apd_hap1	873857	873858	rs3025642	30172743	Liang X	2018-08-30	Bone	Assessing the genetic correlations between early growth parameters and bone mineral density: A polygenic risk score analysis.	Ulna and radius bone mineral density	2,286 European ancestry individuals	NA	6p22.1	GABBR1	rs3025642-?	NR	8E-7				Affymetrix [753382]	N
591	chr6_apd_hap1	874382	874383	rs2267633	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	6p22.1	intergenic	rs2267633-A	0.87355	1E-9		6.079	z score decrease	Illumina [18485882] (imputed)	N
591	chr6_apd_hap1	878947	878948	rs740883	30804558	Grove J	2019-02-25	Nat Genet	Identification of common genetic risk variants for autism spectrum disorder.	Autism spectrum disorder	18,381 European ancestry cases, 27,969 European ancestry controls	2,119 European ancestry cases, 142,379 European ancestry controls	6p22.1	Intergenic	rs740883-T	0.088	1E-6		1.1160713	[NR]	Illumina [9112387] (imputed)	N
591	chr6_apd_hap1	883533	883534	rs41286287	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	6p22.1	NR	rs41286287-A	NR	2E-8		5.59	z score increase	Affymetrix [10847151] (imputed)	N
591	chr6_apd_hap1	883533	883534	rs41286287	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling miserable	376,097 European ancestry individuals	NA	6p22.1	TRIM27	rs41286287-A	0.0707157	1E-8		5.72	z score increase	NR [10847151] (imputed)	N
591	chr6_apd_hap1	883978	883979	rs29253	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	GABBR1	rs29253-G	NR	3E-12		0.0329464	[0.024-0.042] unit decrease	Affymetrix [321016] (imputed)	N
591	chr6_apd_hap1	897794	897795	rs41291770	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	145,648 East Asian ancestry individuals	NA	6p22.1	NR	rs41291770-T	0.792877	4E-11		0.030339	[0.021-0.039] SD units decrease	Affymetrix, Illumina [16710488] (imputed)	N
591	chr6_apd_hap1	899776	899777	rs143229677	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	6p22.1	GABBR1	rs143229677-A	0.0035	3E-13		0.2309051	[0.17-0.29] unit increase	Affymetrix [~ 2500000] (imputed)	N
591	chr6_apd_hap1	905465	905466	rs62392942	28440896	Yin X	2017-04-25	Am J Med Genet B Neuropsychiatr Genet	Genome-wide meta-analysis identifies a novel susceptibility signal at CACNA2D3 for nicotine dependence.	Nicotine dependence	7,297 European ancestry cases, 5,577 European ancestry controls, 918 European ancestry whole genome sequenced cases, 921 European ancestry whole genome sequenced controls, African American cases, 1,500 African American controls	NA	6p22.1	GABBR1	rs62392942-T		1E-6		0.06	[0.04-0.08] unit decrease	Illumina [at least 3251541] (imputed)	N
591	chr6_apd_hap1	907041	907042	rs111508444	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p22.1	NR	rs111508444-A	0.945	2E-19		1.522	[1.43-1.61]	Illumina [11270530] (imputed)	N
591	chr6_apd_hap1	910576	910577	rs3095267	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine without aura	7,107 European ancestry cases, 69,427 European ancestry controls	NA	6p22.1	intergenic	rs3095267-?	0.81	9E-6		1.12	[1.06-1.18]	Affymetrix, Illumina [~ 2300000] (imputed)	N
591	chr6_apd_hap1	910631	910632	rs3131856	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical thickness (MOSTest)	26,502 European ancestry individuals	NA	6p22.1	RALGPS2, ANGPTL1	rs3131856-?		2E-10				NR [7428630] (imputed)	N
591	chr6_apd_hap1	910631	910632	rs3131856	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	6p22.1	LRRC16A, SCGN, SLC17A4, SLC17A1, SLC17A3, SLC17A2, TRIM38, HIST1H1A, HIST1H3A, HIST1H4A, HIST1H4B, HIST1H3B, HIST1H2AB, HIST1H2BB, HIST1H3C, HIST1H1C, HFE, HIST1H2BC, HIST1H2AC, HIST1H2BD, HIST1H2BE, HIST1H4D, HIST1H3D, HIST1H2AD, HIST1H2BF, HIST1H4E, HIST1H3G, HIST1H2BI, BTN3A2, BTN2A2, BTN3A1, BTN3A3, BTN2A1, BTN1A1, HMGN4, ABT1, ZNF322, HIST1H2BJ, HIST1H2AG, HIST1H2BK, HIST1H4I, HIST1H2AH, POM121L2, ZNF391, ZNF184, HIST1H2BL, HIST1H2AI, HIST1H3H, HIST1H2AJ, HIST1H2BM, HIST1H4J, HIST1H4K, HIST1H2AK, HIST1H2BN, HIST1H2AL, HIST1H1B, HIST1H3I, HIST1H4L, HIST1H3J, HIST1H2AM, HIST1H2BO, OR2B2, OR2B6, ZNF165, ZSCAN16, ZKSCAN8, ZSCAN9, ZKSCAN4, NKAPL, PGBD1, ZSCAN31, ZKSCAN3, ZSCAN12, ZSCAN23, GPX6, SCAND3, TRIM27, C6orf100, ZNF311, OR2W1, OR2B3, OR2J1, OR2J3, OR2J2, OR14J1, OR5V1, OR12D3, OR12D2, OR11A1, OR10C1, OR2H1, MAS1L, UBD, GABBR1, OR2H2	rs3131856-?		7E-16				NR [7428630] (imputed)	N
591	chr6_apd_hap1	910631	910632	rs3131856	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p22.1	NR	rs3131856-?	NR	1E-7		0.1953	[0.12-0.27] unit decrease	Illumina [at least 560000] (imputed)	N
591	chr6_apd_hap1	913227	913228	rs9257927	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs9257927-?		1E-8		1.66	[1.39-1.97]	Illumina [7645193] (imputed)	N
591	chr6_apd_hap1	914963	914964	rs29232	19664746	Tse KP	2009-08-05	Am J Hum Genet	Genome-wide association study reveals multiple nasopharyngeal carcinoma-associated loci within the HLA region at chromosome 6p21.3.	Nasopharyngeal carcinoma	277 Han Chinese ancestry cases, 285 Han Chinese ancestry controls	635 Han Chinese ancestry cases, 1,640 Han Chinese ancestry controls	6p22.1	GABBR1	rs29232-A	0.46	9E-17		1.67	[1.48-1.88]	Illumina [480365]	N
591	chr6_apd_hap1	915309	915310	rs3117318	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fish- and plant-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	6p22.1	LRRC16A, SCGN, SLC17A4, SLC17A1, SLC17A3, SLC17A2, TRIM38, HIST1H1A, HIST1H3A, HIST1H4A, HIST1H4B, HIST1H3B, HIST1H2AB, HIST1H2BB, HIST1H3C, HIST1H1C, HFE, HIST1H4C, HIST1H1T, HIST1H2BC, HIST1H2AC, HIST1H2BD, HIST1H2BE, HIST1H4D, HIST1H3D, HIST1H2AD, HIST1H2BF, HIST1H4E, HIST1H3G, HIST1H2BI, BTN3A2, BTN2A2, BTN3A1, BTN3A3, BTN2A1, BTN1A1, HMGN4, ABT1, ZNF322, HIST1H2BJ, HIST1H2AG, HIST1H2BK, HIST1H4I, HIST1H2AH, PRSS16, POM121L2, ZNF391, ZNF184, HIST1H2BL, HIST1H2AI, HIST1H3H, HIST1H2AJ, HIST1H2BM, HIST1H4J, HIST1H4K, HIST1H2AK, HIST1H2BN, HIST1H2AL, HIST1H1B, HIST1H3I, HIST1H4L, HIST1H3J, HIST1H2AM, HIST1H2BO, OR2B2, OR2B6, ZNF165, ZSCAN16, ZKSCAN8, ZSCAN9, ZKSCAN4, NKAPL, PGBD1, ZSCAN31, ZKSCAN3, ZSCAN12, ZSCAN23, GPX6, SCAND3, TRIM27, C6orf100, ZNF311, OR2W1, OR2B3, OR2J1, OR2J3, OR2J2, OR14J1, OR5V1, OR12D3, OR12D2, OR11A1, OR10C1, OR2H1, MAS1L, UBD, GABBR1, OR2H2	rs3117318-?	NR	7E-9		0.0168393	[0.011-0.023] unit increase	Affymetrix [25921788] (imputed)	N
591	chr6_apd_hap1	915413	915414	rs3131854	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p22.1		rs3131854-T	0.213	6E-18				Affymetrix [10369434] (imputed)	N
592	chr6_apd_hap1	922481	922482	rs188289856	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p22.1	NR	rs188289856-?	NR	6E-8		0.2325	[0.15-0.32] unit increase	Illumina [at least 560000] (imputed)	N
592	chr6_apd_hap1	925745	925746	rs1233367	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6p22.1	MOG	rs1233367-G	NR	3E-8		0.0181448	[0.012-0.025] unit decrease	Affymetrix [321114] (imputed)	N
592	chr6_apd_hap1	926840	926841	rs9468569	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p22.1	MOG, ZFP57, ZDHHC20P1	rs9468569-A	0.01203611	1E-16	(EA, Alpha-2-macroglobulin receptor-associated protein)	1.631	[1.25-2.01] unit increase	Affymetrix [509946]	N
592	chr6_apd_hap1	927637	927638	rs29234	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	6p22.1	Intergenic	rs29234-?	NR	2E-8		2.219	[NR]	Affymetrix [492217] (imputed)	N
592	chr6_apd_hap1	929844	929845	rs2252711	23284291	Hancock DB	2012-12-20	PLoS Genet	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (smoking interaction)	50,047 European ancestry individuals	NA	6p22.1	MOG	rs2252711-T	NR	4E-7	(FEV1/FVC, Ever-smoking)			NR [~ 2500000] (imputed)	N
592	chr6_apd_hap1	930472	930473	rs16895223	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	MOG	rs16895223-G	NR	4E-10		0.0263599	[0.018-0.035] unit decrease	Affymetrix [321016] (imputed)	N
592	chr6_apd_hap1	931683	931684	rs182971160	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p22.1	NR	rs182971160-?	NR	2E-7		0.3024	[0.19-0.42] unit increase	Illumina [at least 560000] (imputed)	N
592	chr6_apd_hap1	964321	964322	rs3116813	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p22.1	NR	rs3116813-A	0.1026	6E-7	(EA)	0.0553	[0.034-0.077] unit decrease	Illumina [~ 11800000] (imputed)	N
592	chr6_apd_hap1	964456	964457	rs3116812	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8 on Central Memory CD8+ T cell	2,910 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p22.1		rs3116812-G	0.2977	1E-8		0.1871	[0.12-0.25] unit decrease	Illumina [17945467] (imputed)	N
592	chr6_apd_hap1	967411	967412	rs3131888	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	1,505 Ashkenazi Jewish founder cases, 2,553 Ashkenazi Jewish founder controls	NA	6p22.1	NR	rs3131888-C	NR	7E-6		1.2820514	[NR]	Illumina [up to 9792010] (imputed)	N
592	chr6_apd_hap1	968883	968884	rs7764829	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p22.1		rs7764829-A	0.612	4E-25				Affymetrix [10369434] (imputed)	N
592	chr6_apd_hap1	969233	969234	rs9278250	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6p22.1		rs9278250-C	0.247045	7E-12		0.019422151	[0.014-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
592	chr6_apd_hap1	1029695	1029696	rs1633063	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Sleep duration	384,317 European ancestry individuals	NA	6p22.1		rs1633063-T	0.246	3E-9		0.01681	[0.011-0.022] unit decrease	Affymetrix, Illumina [10862567] (imputed)	N
592	chr6_apd_hap1	1033829	1033830	rs1610633	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p22.1		rs1610633-G	0.752	5E-94				Affymetrix [10369434] (imputed)	N
592	chr6_apd_hap1	1034492	1034493	rs1611284	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p22.1	XXbac-BPG170G13.31	rs1611284-G	NR	2E-9		0.0170381	[0.011-0.023] unit decrease	Affymetrix [319769] (imputed)	N
592	chr6_apd_hap1	1034492	1034493	rs1611284	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p22.1	XXbac-BPG170G13.31	rs1611284-G	NR	2E-8		0.015981	[0.01-0.022] unit decrease	Affymetrix [319769] (imputed)	N
592	chr6_apd_hap1	1036239	1036240	rs1737062	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p22.1		rs1737062-C	0.472	8E-23				Affymetrix [10369434] (imputed)	N
592	chr6_apd_hap1	1038567	1038568	rs35794939	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antithrombotic agents)	67,653 European ancestry cases, 85,986 European ancestry controls, 54,220 East Asian ancestry cases, 124,506 East Asian ancestry controls	NA	6p22.1		rs35794939-G	NR	2E-11		0.086	[0.061-0.111] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
592	chr6_apd_hap1	1039186	1039187	rs115635848	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	XXbac-BPG170G13.31	rs115635848-A	NR	9E-11		0.0221196	[0.015-0.029] unit decrease	Affymetrix [323858] (imputed)	N
592	chr6_apd_hap1	1039186	1039187	rs115635848	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	XXbac-BPG170G13.31	rs115635848-A	NR	8E-11		0.0222067	[0.016-0.029] unit decrease	Affymetrix [127266] (imputed)	N
592	chr6_apd_hap1	1039433	1039434	rs28986310	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	6p22.1	NR	rs28986310-T	0.0618266	2E-8		5.66	z score increase	NR [10847151] (imputed)	N
592	chr6_apd_hap1	1039433	1039434	rs28986310	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	6p22.1	intergenic	rs28986310-T	0.061827	1E-7		5.292	z score increase	Illumina [18485882] (imputed)	N
592	chr6_apd_hap1	1041199	1041200	rs1737030	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mononucleosis	17,457 European ancestry cases, 68,446 European ancestry controls	NA	6p22.1	NR	rs1737030-?	NR	8E-7		0.0636	[0.038-0.089] unit decrease	Illumina [at least 560000] (imputed)	N
592	chr6_apd_hap1	1042324	1042325	rs1815741	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Non-small cell lung cancer	27,120 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	6p22.1	NR	rs1815741-C	0.92	3E-7		0.86	[0.81-0.91]	NR [NR] (imputed)	N
592	chr6_apd_hap1	1042324	1042325	rs1815741	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Lung adenocarcinoma	15,581 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	6p22.1	NR	rs1815741-C	0.92	2E-7		0.84	[0.78-0.89]	NR [NR] (imputed)	N
592	chr6_apd_hap1	1042634	1042635	rs3888722	30169916	Sun Y	2018-08-31	J Eur Acad Dermatol Venereol	Investigation of the Predisposing Factor of Pemphigus and its clinical subtype through a Genome-wide association and next generation sequence analysis.	Pemphigus foliaceus	65 Chinese ancestry cases, 844 Chinese ancestry controls	at least 49 Chinese ancestry cases, up to 996 Chinese ancestry controls	6p22.1	NR	rs3888722-?	NR	7E-9		2.74		Illumina [5546030] (imputed)	N
593	chr6_apd_hap1	1051385	1051386	rs116603789	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p22.1	NR	rs116603789-?	NR	1E-6		0.2936	[0.17-0.41] unit increase	Illumina [at least 560000] (imputed)	N
593	chr6_apd_hap1	1052340	1052341	rs1611236	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p22.1		rs1611236-A	0.678	4E-29				Affymetrix [10369434] (imputed)	N
593	chr6_apd_hap1	1052340	1052341	rs1611236	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p22.1		rs1611236-A	0.678	6E-22				Affymetrix [10369434] (imputed)	N
593	chr6_apd_hap1	1052340	1052341	rs1611236	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p22.1		rs1611236-A	0.678	7E-31				Affymetrix [10369434] (imputed)	N
593	chr6_apd_hap1	1052340	1052341	rs1611236	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p22.1		rs1611236-A	0.678	4E-48				Affymetrix [10369434] (imputed)	N
593	chr6_apd_hap1	1052340	1052341	rs1611236	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p22.1		rs1611236-A	0.678	8E-38				Affymetrix [10369434] (imputed)	N
593	chr6_apd_hap1	1052340	1052341	rs1611236	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p22.1		rs1611236-A	0.678	1E-16				Affymetrix [10369434] (imputed)	N
593	chr6_apd_hap1	1054779	1054780	rs9258357	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p22.1		rs9258357-T	0.163	4E-16				Affymetrix [10369434] (imputed)	N
593	chr6_apd_hap1	1054779	1054780	rs9258357	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	6p22.1		rs9258357-T	0.163	3E-15				Affymetrix [10369434] (imputed)	N
593	chr6_apd_hap1	1054779	1054780	rs9258357	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p22.1		rs9258357-T	0.163	3E-10				Affymetrix [10369434] (imputed)	N
593	chr6_apd_hap1	1056458	1056459	rs9258375	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p22.1	NR	rs9258375-G	0.122	1E-12		0.0131	[0.0094-0.0168] unit decrease	NR [7666894] (imputed)	N
593	chr6_apd_hap1	1056458	1056459	rs9258375	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA	6p22.1	NR	rs9258375-?	NR	8E-6		0.0571	[0.032-0.082] unit decrease	Illumina [at least 560000] (imputed)	N
593	chr6_apd_hap1	1058044	1058045	rs114802991	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	6p22.1	HLA-G	rs114802991-G	0.993211	8E-9		0.072933	[0.048-0.098] unit decrease	Affymetrix [NR] (imputed)	N
593	chr6_apd_hap1	1063523	1063524	rs1611207	32752121	Nedoszytko B	2020-07-31	Int J Mol Sci	Results from a Genome-Wide Association Study (GWAS) in Mastocytosis Reveal New Gene Polymorphisms Associated with WHO Subgroups.	Mastocytosis	234 European ancestry cases, 5,606 European ancestry controls	NA	6p22.1	HLA-V	rs1611207-A	0.3807	3E-13		2.105	[1.9-2.31]	Illumina [281811]	N
593	chr6_apd_hap1	1063523	1063524	rs1611207	32752121	Nedoszytko B	2020-07-31	Int J Mol Sci	Results from a Genome-Wide Association Study (GWAS) in Mastocytosis Reveal New Gene Polymorphisms Associated with WHO Subgroups.	Cutaneous mastocytosis	141 European ancestry cases, 5,606 European ancestry controls	NA	6p22.1	HLA-V	rs1611207-A	0.3807	1E-8		2.01	[-18.0604-22.0804]	Illumina [281811]	N
593	chr6_apd_hap1	1063676	1063677	rs45479291	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	229 European ancestry cases, 1,088 European ancestry controls	NA	6p22.1	HLA-V	rs45479291-?	NR	2E-16	(conditional on rs12524487and rs62392216)			Illumina [4388215] (imputed)	N
593	chr6_apd_hap1	1066532	1066533	rs1737002	32771030	Tangtanatakul P	2020-08-08	Arthritis Res Ther	Meta-analysis of genome-wide association study identifies FBN2 as a novel locus associated with systemic lupus erythematosus in Thai population.	Systemic lupus erythematosus	487 Thai cases, 1,606 Thai controls	405 Thai cases, 1,590 Thai controls	6p22.1	HLA-V	rs1737002-A	0.08	2E-6		1.6334	[NR]	Illumina [421909] (imputed)	N
593	chr6_apd_hap1	1067889	1067890	rs1633005	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p22.1	HCG4, HLA-G	rs1633005-A	0.282	7E-16				Illumina [118177]	N
593	chr6_apd_hap1	1068504	1068505	rs2523414	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	6p22.1	NR	rs2523414-?	NR	6E-14		7.508	NR z score increase	Illumina [at least 830937] (imputed)	N
593	chr6_apd_hap1	1071786	1071787	rs1611185	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	HLA-P	rs1611185-C	NR	2E-9		0.0171984	[0.012-0.023] unit decrease	Affymetrix [321016] (imputed)	N
593	chr6_apd_hap1	1075059	1075060	rs1610660	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	6p22.1	RPL7AP7	rs1610660-G	0.19782	5E-16		0.036476128	[0.028-0.045] unit decrease	Affymetrix [93095623] (imputed)	N
593	chr6_apd_hap1	1081113	1081114	rs9380141	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p22.1	HCG4, HLA-G	rs9380141-C	0.29	1E-6	(EA)	1.94	[1.48-2.55]	Illumina [up to 547389]	N
593	chr6_apd_hap1	1084485	1084486	rs1611182	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	6p22.1	MICG	rs1611182-T	NR	4E-9		0.017276	[0.012-0.023] unit increase	Affymetrix [321788] (imputed)	N
593	chr6_apd_hap1	1085485	1085486	rs1610707	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	6p22.1	MICG	rs1610707-A	0.359635	1E-13		0.02435493	[0.018-0.031] unit increase	Affymetrix [93095623] (imputed)	N
593	chr6_apd_hap1	1087761	1087762	rs2523815	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p22.1	HLA-A	rs2523815-A	0.64	2E-22		1.12	[1.11-1.14]	Illumina [at least 560000] (imputed)	N
593	chr6_apd_hap1	1088256	1088257	rs3132713	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	6p22.1		rs3132713-A	0.181	2E-27				Affymetrix [10369434] (imputed)	N
593	chr6_apd_hap1	1088733	1088734	rs56213322	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	6p22.1		rs56213322-A	0.819527	5E-23		0.029193865	[0.023-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
593	chr6_apd_hap1	1090058	1090059	rs2734963	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Oral cavity and pharyngeal cancer	1,223 European ancestry cases, 410,350 European ancestry controls	NA	6p22.1		rs2734963-T	0.193283	6E-7		1.2753475	NR	Affymetrix [7846216] (imputed)	N
593	chr6_apd_hap1	1091393	1091394	rs3094650	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	6p22.1	NR	rs3094650-C	0.722493	3E-16		0.023382017	[0.018-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
593	chr6_apd_hap1	1091393	1091394	rs3094650	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6p22.1	NR	rs3094650-C	0.72248	3E-29		0.031621024	[0.026-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
593	chr6_apd_hap1	1091393	1091394	rs3094650	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	6p22.1		rs3094650-C	0.722504	9E-32		0.032617964	[0.027-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
593	chr6_apd_hap1	1091481	1091482	rs2523809	22075330	Granada M	2011-11-08	J Allergy Clin Immunol	A genome-wide association study of plasma total IgE concentrations in the Framingham Heart Study.	IgE levels	6,819 European ancestry individuals	7,809 European ancestry indivduals	6p22.1	HLA-G	rs2523809-T	NR	4E-8		0.06	[NR] unit increase	Affymetrix [2540223] (imputed)	N
593	chr6_apd_hap1	1092596	1092597	rs1611579	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6p22.1	HLA-H	rs1611579-C	0.122264	4E-17		0.051560964	[0.04-0.064] unit increase	Affymetrix [93095623] (imputed)	N
593	chr6_apd_hap1	1092596	1092597	rs1611579	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p22.1	NR	rs1611579-C	0.098	8E-7	(EA)	0.058	[0.035-0.081] unit decrease	Illumina [~ 11800000] (imputed)	N
593	chr6_apd_hap1	1092702	1092703	rs1611581	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	6p22.1	NR	rs1611581-C	0.682015	5E-8		0.0185265	[0.012-0.025] unit increase	Affymetrix [16577424] (imputed)	N
593	chr6_apd_hap1	1095318	1095319	rs2523802	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	6p22.1	NR	rs2523802-?	NR	2E-8		0.088	[0.057-0.119] unit decrease	Illumina [at least 560000] (imputed)	N
593	chr6_apd_hap1	1096450	1096451	rs2734950	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	6p22.1	HLA-H	rs2734950-T	0.402539	6E-12		0.01625928	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
593	chr6_apd_hap1	1097727	1097728	rs2734947	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hypothyroidism	1,114 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	6p22.1		rs2734947-C	0.497362317	4E-13		0.35440555	[0.26-0.45] unit increase	Illumina [13429045] (imputed)	N
593	chr6_apd_hap1	1114266	1114267	rs189370103	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	6p22.1	NR	rs189370103-?	NR	8E-6	(Native Hawaiian)	1.0607	[NR] unit increase	Illumina [up to 11892802] (imputed)	N
593	chr6_apd_hap1	1117838	1117839	rs2517873	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Squamous cell lung carcinoma	8,350 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	6p22.1	NR	rs2517873-A	NR	2E-10		1.23	[1.15-1.31]	NR [NR] (imputed)	N
593	chr6_apd_hap1	1117838	1117839	rs2517873	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Non-small cell lung cancer	27,120 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	6p22.1	NR	rs2517873-A	NR	5E-11		1.16	[1.11-1.21]	NR [NR] (imputed)	N
593	chr6_apd_hap1	1117838	1117839	rs2517873	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Lung adenocarcinoma	15,581 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	6p22.1	NR	rs2517873-A	NR	3E-6		1.13	[1.08-1.20]	NR [NR] (imputed)	N
593	chr6_apd_hap1	1117838	1117839	rs2517873	31326317	Dai J	2019-07-17	Lancet Respir Med	Identification of risk loci and a polygenic risk score for lung cancer: a large-scale prospective cohort study in Chinese populations.	Non-small cell lung cancer	13,327 Chinese ancestry cases, 13,793 European ancestry cases, 13,328 Chinese ancestry controls, 14,027 European ancestry controls	NA	6p22.1	MHC	rs2517873-A	0.145	5E-11		1.16	[1.11-1.21]	Illumina [~ 11000000] (imputed)	N
593	chr6_apd_hap1	1131100	1131101	rs75460055	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p22.1	NR	rs75460055-T	0.039	5E-18	(conditional)	0.47	[0.3-0.64]	Illumina [11270530] (imputed)	N
593	chr6_apd_hap1	1132603	1132604	rs1611399	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	HCG4B	rs1611399-C	NR	5E-8		0.0192493	[0.012-0.026] unit decrease	Affymetrix [323858] (imputed)	N
593	chr6_apd_hap1	1132603	1132604	rs1611399	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	HCG4B	rs1611399-C	NR	4E-8		0.0194622	[0.013-0.026] unit decrease	Affymetrix [127266] (imputed)	N
593	chr6_apd_hap1	1135428	1135429	rs9259819	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	6p22.1	HLA-J	rs9259819-G	0.5	2E-9		1.036	[1.02-1.05]	Affymetrix, Illumina [8307659] (imputed)	N
593	chr6_apd_hap1	1138949	1138950	rs389725	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	6p22.1	HCG4B, HLA-U	rs389725-T	0.78328	3E-30		0.03487705	[0.029-0.041] unit decrease	Affymetrix [93095623] (imputed)	N
593	chr6_apd_hap1	1139936	1139937	rs2975009	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	6p22.1	HCG4B, HLA-U	rs2975009-T	0.4651	7E-24		0.0380916	[0.031-0.046] unit increase	Affymetrix [~ 2500000] (imputed)	N
593	chr6_apd_hap1	1141446	1141447	rs2471863	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p22.1	HLA-A	rs2471863-C	0.526	8E-7		0.057	[0.033-0.081] unit increase	Affymetrix, Illumina [7374092] (imputed)	N
593	chr6_apd_hap1	1141496	1141497	rs2524005	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Varicose veins	22,037 European ancestry cases, 437,665 European ancestry controls, 474 East Asian ancestry cases, 178,252 East Asian ancestry controls	NA	6p22.1		rs2524005-A	NR	1E-12		0.0995	[0.072-0.127] unit decrease	Affymetrix, Illumina [25842955] (imputed)	N
593	chr6_apd_hap1	1141496	1141497	rs2524005	22688191	Bergen SE	2012-06-12	Mol Psychiatry	Genome-wide association study in a Swedish population yields support for greater CNV and MHC involvement in schizophrenia compared with bipolar disorder.	Bipolar disorder and schizophrenia	2,111 European ancestry schizophrenia cases, 836 European ancestry bipolar disorder cases, 2,535 European ancestry controls	NA	6p22.1	other genes, MHC	rs2524005-?	NR	5E-7		1.32	[NR]	Affymetrix [745006]	N
593	chr6_apd_hap1	1142471	1142472	rs72498354	32339537	Roberts V	2020-04-24	J Invest Dermatol	Genome wide association study identifies genetic associations with perceived age.	Youthful appearance (self-reported)	423,992 European ancestry individuals	NA	6p22.1	HLA-A	rs72498354-C	0.960927	4E-9		0.933287	NR	Affymetrix [~ 9600000] (imputed)	N
593	chr6_apd_hap1	1143413	1143414	rs410930	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	6p22.1		rs410930-G	0.437235	1E-8		0.024544	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
593	chr6_apd_hap1	1143654	1143655	rs1611337	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6p22.1		rs1611337-G	0.437603	2E-14		0.0312596	[0.023-0.039] unit decrease	NR [11722792] (imputed)	N
593	chr6_apd_hap1	1143654	1143655	rs1611337	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	6p22.1		rs1611337-G	0.437688	8E-10		0.0255967	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
593	chr6_apd_hap1	1143654	1143655	rs1611337	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p22.1		rs1611337-G	0.437603	8E-16		0.0334002	[0.025-0.042] unit decrease	NR [11722792] (imputed)	N
593	chr6_apd_hap1	1143654	1143655	rs1611337	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6p22.1		rs1611337-G	0.437603	9E-12		0.0276947	[0.02-0.036] unit decrease	NR [11722792] (imputed)	N
593	chr6_apd_hap1	1143654	1143655	rs1611337	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6p22.1		rs1611337-G	0.437603	1E-13		0.0306584	[0.023-0.039] unit increase	NR [11722792] (imputed)	N
593	chr6_apd_hap1	1143654	1143655	rs1611337	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	6p22.1		rs1611337-G	0.437688	4E-9		0.0245909	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
593	chr6_apd_hap1	1143654	1143655	rs1611337	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	6p22.1		rs1611337-G	0.437603	2E-9		0.0245327	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
593	chr6_apd_hap1	1143654	1143655	rs1611337	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p22.1		rs1611337-G	0.437603	5E-18		0.036723	[0.028-0.045] unit increase	NR [11722792] (imputed)	N
593	chr6_apd_hap1	1143654	1143655	rs1611337	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6p22.1		rs1611337-G	0.437603	5E-10		0.0250212	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
593	chr6_apd_hap1	1143654	1143655	rs1611337	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	6p22.1		rs1611337-G	0.437688	5E-8		0.0224294	[0.014-0.03] unit increase	NR [11722792] (imputed)	N
593	chr6_apd_hap1	1143654	1143655	rs1611337	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p22.1		rs1611337-G	0.437603	4E-17		0.0351407	[0.027-0.043] unit increase	NR [11722792] (imputed)	N
593	chr6_apd_hap1	1143654	1143655	rs1611337	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6p22.1		rs1611337-G	0.437603	7E-11		0.02633	[0.018-0.034] unit increase	NR [11722792] (imputed)	N
593	chr6_apd_hap1	1143872	1143873	rs9259970	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6p22.1		rs9259970-G	0.717498	4E-15		0.0371322	[0.028-0.046] unit decrease	NR [11722792] (imputed)	N
593	chr6_apd_hap1	1143872	1143873	rs9259970	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	6p22.1		rs9259970-G	0.717498	5E-8		0.0259759	[0.017-0.035] unit decrease	NR [11722792] (imputed)	N
593	chr6_apd_hap1	1143872	1143873	rs9259970	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	6p22.1		rs9259970-G	0.717498	6E-10		0.0286546	[0.02-0.038] unit decrease	NR [11722792] (imputed)	N
593	chr6_apd_hap1	1145318	1145319	rs3098023	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium HDL	115,082 European ancestry individuals	NA	6p22.1		rs3098023-A	0.863945	3E-9		0.0367615	[0.025-0.049] unit increase	NR [11722792] (imputed)	N
593	chr6_apd_hap1	1145318	1145319	rs3098023	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large HDL	115,082 European ancestry individuals	NA	6p22.1		rs3098023-A	0.863945	6E-9		0.0349811	[0.023-0.047] unit increase	NR [11722792] (imputed)	N
593	chr6_apd_hap1	1145318	1145319	rs3098023	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in HDL	115,082 European ancestry individuals	NA	6p22.1		rs3098023-A	0.863945	2E-8		0.0348764	[0.023-0.047] unit increase	NR [11722792] (imputed)	N
593	chr6_apd_hap1	1145318	1145319	rs3098023	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium HDL	115,082 European ancestry individuals	NA	6p22.1		rs3098023-A	0.863945	3E-13		0.0429887	[0.031-0.055] unit increase	NR [11722792] (imputed)	N
593	chr6_apd_hap1	1145318	1145319	rs3098023	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in HDL	115,082 European ancestry individuals	NA	6p22.1		rs3098023-A	0.863945	9E-11		0.0369227	[0.026-0.048] unit increase	NR [11722792] (imputed)	N
593	chr6_apd_hap1	1145333	1145334	rs28749114	33002439	Jin G	2020-10-01	Lancet Oncol	Genetic risk, incident gastric cancer, and healthy lifestyle: a meta-analysis of genome-wide association studies and prospective cohort study.	Gastric cancer	10,254 Han Chinese ancestry cases, 10,914 Han Chinese ancestry controls	NA	6p22.1	NR	rs28749114-A	0.6	5E-9		1.14	NR	Affymetrix, Illumina [6957974] (imputed)	N
593	chr6_apd_hap1	1145333	1145334	rs28749114	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p22.1	HLA-A	rs28749114-G	0.359	4E-17	(Tapasin-related protein, TAPBPL.6364.7.3)	0.22	[0.16-0.28] unit decrease	Affymetrix [10572788] (imputed)	N
593	chr6_apd_hap1	1145591	1145592	rs112580141	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HVEM on naive CD8+ T cell	1,247 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p22.1		rs112580141-C	0.37079	2E-8		0.2622	[0.17-0.35] unit increase	Illumina [16410374] (imputed)	N
593	chr6_apd_hap1	1145826	1145827	rs9260013	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8 on Central Memory CD8+ T cell	2,910 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p22.1		rs9260013-T	0.19942	5E-11		0.2579	[0.18-0.33] unit increase	Illumina [17945467] (imputed)	N
593	chr6_apd_hap1	1146194	1146195	rs453325	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	6p22.1	HLA-A	rs453325-A	0.7549	2E-8		0.002	[0.0014-0.0026] unit decrease	Affymetrix [15275733] (imputed)	N
593	chr6_apd_hap1	1146572	1146573	rs2860580	27436580	Cui Q	2016-07-19	Hum Mol Genet	An extended genome-wide association study identifies novel susceptibility loci for nasopharyngeal carcinoma.	Nasopharyngeal carcinoma	1,583 Southern Chinese ancestry cases, 2,979 Southern Chinese ancestry controls	5,463 Southern Chinese ancestry cases, 5,591 Southern Chinese ancestry controls	6p22.1	NR	rs2860580-?	0.62	3E-31		1.89	[1.69-2.13]	Illumina [463250]	N
593	chr6_apd_hap1	1146572	1146573	rs2860580	20512145	Bei JX	2010-05-30	Nat Genet	A genome-wide association study of nasopharyngeal carcinoma identifies three new susceptibility loci.	Nasopharyngeal carcinoma	1,583 Chinese ancestry cases, 1,894 Chinese ancestry controls	3,507 Chinese ancestry cases, 3,063 Chinese ancestry controls, 284  Chinese ancestry trios	6p22.1	HLA-A	rs2860580-?	0.62	5E-67		1.72	[1.61-1.82]	Illumina [464328]	N
593	chr6_apd_hap1	1146657	1146658	rs3916500	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p22.1	HLA-A	rs3916500-A	0.94	7E-6		0.0619	[0.035-0.089] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
593	chr6_apd_hap1	1147716	1147717	rs28749130	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	6p22.1	HLA-A	rs28749130-A	0.290175	2E-20		0.05423409	[0.043-0.066] unit increase	Affymetrix [93095623] (imputed)	N
593	chr6_apd_hap1	1147776	1147777	rs28749131	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6p22.1	NR	rs28749131-G	0.6706	2E-10		1.041016	[1.03-1.05]	Affymetrix [15688218] (imputed)	N
593	chr6_apd_hap1	1148692	1148693	rs13203830	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p22.1	NR	rs13203830-?	NR	8E-10				Affymetrix [~ 8270000] (imputed)	N
593	chr6_apd_hap1	1148921	1148922	rs9260078	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein B2M	5,353 Icelandic ancestry individuals	NA	6p22.1		rs9260078-A	0.3408	3E-12		0.126365	[0.091-0.162] unit increase	Illumina [7506463] (imputed)	N
593	chr6_apd_hap1	1149105	1149106	rs1632887	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		6p22.1	HLA-A	rs1632887-T	0.725853	2E-12		0.0110934	[0.008-0.0142] unit decrease	Affymetrix [12370749]	N
593	chr6_apd_hap1	1149167	1149168	rs138847126	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental extreme longevity (95 years and older)	1,339 middle-aged British cases, 40,934 middle-aged British controls	NA	6p22.1	NR	rs138847126-?	NR	7E-6		0.01176	[0.0066-0.0169] unit decrease	Affymetrix [9658292] (imputed)	N
593	chr6_apd_hap1	1149708	1149709	rs534723171	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p22.1	NR	rs534723171-T	0.061	2E-30	(conditional)	2.735	[2.56-2.91]	Illumina [11270530] (imputed)	N
593	chr6_apd_hap1	1150243	1150244	rs1143146	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	6p22.1	HLA-A	rs1143146-G	0.462795	8E-17		0.019093748	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
593	chr6_apd_hap1	1150263	1150264	rs41546314	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p22.1		rs41546314-T	0.309983	5E-23		1.0479736	[1.04-1.05]	Affymetrix, Illumina [9851866] (imputed)	N
593	chr6_apd_hap1	1150363	1150364	rs9260127	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Triglycerides	429,011 European ancestry individuals	NA	6p22.1		rs9260127-G	0.45	7E-14		0.015	mmol/L decrease	NR [NR] (imputed)	N
593	chr6_apd_hap1	1150363	1150364	rs9260127	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	6p22.1		rs9260127-G	0.45	3E-20				NR [NR] (imputed)	N
593	chr6_apd_hap1	1150363	1150364	rs9260127	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	High density lipoprotein cholesterol levels	392,965 European ancestry individuals	NA	6p22.1		rs9260127-G	0.45	4E-13		0.013	mmol/L decrease	NR [NR] (imputed)	N
593	chr6_apd_hap1	1150363	1150364	rs9260127	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	6p22.1		rs9260127-G	0.45	8E-12		0.01	% increase	NR [NR] (imputed)	N
593	chr6_apd_hap1	1150363	1150364	rs9260127	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Aspartate aminotransferase levels	424,778 European ancestry individuals	NA	6p22.1		rs9260127-G	0.45	4E-17		0.016	U/L decrease	NR [NR] (imputed)	N
593	chr6_apd_hap1	1150363	1150364	rs9260127	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	6p22.1	HCG4P5	rs9260127-C	0.554534	6E-12		0.01662031	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
593	chr6_apd_hap1	1150616	1150617	rs79361534	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p22.1	HLA-A	rs79361534-A		1E-36		0.036	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
593	chr6_apd_hap1	1150644	1150645	rs1071742	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p22.1		rs1071742-?	NR	2E-17		0.0224179	[0.018-0.027] unit decrease	Affymetrix [20259828] (imputed)	N
593	chr6_apd_hap1	1150652	1150653	rs1136689	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	6p22.1	HLA-A	rs1136689-C	0.145613	8E-12		0.022252768	[0.016-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
593	chr6_apd_hap1	1150686	1150687	rs1136692	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	HLA-A, HCG4P5	rs1136692-A	NR	1E-9		0.0207185	[0.014-0.027] unit decrease	Affymetrix [323858] (imputed)	N
593	chr6_apd_hap1	1150686	1150687	rs1136692	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	HLA-A, HCG4P5	rs1136692-A	NR	1E-9		0.0208558	[0.014-0.028] unit decrease	Affymetrix [127266] (imputed)	N
593	chr6_apd_hap1	1150915	1150916	rs9260151	29404672	Roshandel D	2018-02-05	Diabetologia	Meta-genome-wide association studies identify a locus on chromosome 1 and multiple variants in the MHC region for serum C-peptide in type 1 diabetes.	C-peptide levels in type I diabetes	3,479 European ancestry individuals	NA	6p22.1	MHC, HLA-A	rs9260151-T	0.09	8E-8				Illumina [7988630] (imputed)	N
593	chr6_apd_hap1	1150999	1151000	rs3173420	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	6p22.1	HLA-A	rs3173420-A	0.525347	1E-30		0.02624179	[0.022-0.031] unit increase	Affymetrix [93095623] (imputed)	N
593	chr6_apd_hap1	1151113	1151114	rs9256983	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p22.1	NR	rs9256983-?	NR	5E-6		0.0485	[0.028-0.069] unit increase	Illumina [at least 560000] (imputed)	N
593	chr6_apd_hap1	1151124	1151125	rs9260155	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p22.1	HLA-A	rs9260155-C	0.420482	2E-24		0.027366111	[0.022-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
593	chr6_apd_hap1	1151241	1151242	rs3132687	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	6p22.1	NR	rs3132687-?	NR	2E-11	(MIC-A)	0.664201	[0.47-0.86] unit increase	Illumina [11901634] (imputed)	N
593	chr6_apd_hap1	1151570	1151571	rs9260164	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	6p22.1	HLA-A	rs9260164-C	0.737668	6E-21		0.0151662	[0.012-0.018] unit decrease	Affymetrix [12370749]	N
593	chr6_apd_hap1	1152343	1152344	rs9260194	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycoprotein acetyls levels	115,082 European ancestry individuals	NA	6p22.1		rs9260194-C	0.511331	5E-17		0.0344827	[0.026-0.043] unit decrease	NR [11722792] (imputed)	N
593	chr6_apd_hap1	1152380	1152381	rs2975059	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p22.1		rs2975059-T	0.673	3E-55				Affymetrix [10369434] (imputed)	N
593	chr6_apd_hap1	1152380	1152381	rs2975059	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6p22.1	HLA-A	rs2975059-C	0.327132	2E-74		0.04847726	[0.043-0.054] unit increase	Affymetrix [93095623] (imputed)	N
593	chr6_apd_hap1	1152480	1152481	rs17882753	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	6p22.1	HLA-A	rs17882753-T	0.1254	6E-21		0.05153304	[0.041-0.062] unit increase	Affymetrix [~ 2500000] (imputed)	N
593	chr6_apd_hap1	1153184	1153185	rs1061235	21428769	McCormack M	2011-03-24	N Engl J Med	HLA-A*3101 and carbamazepine-induced hypersensitivity reactions in Europeans.	Adverse response to carbamazepine	65 European ancestry cases, 3,987 European ancestry controls	80 European ancestry cases, 257 European ancestry controls	6p22.1	HLA-A*3101	rs1061235-?	NR	1E-7		9.12	[4.03-20.65]	Illumina [~ 1200000] (imputed)	N
593	chr6_apd_hap1	1153772	1153773	rs34941730	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p22.1	HLA-A	rs34941730-G	0.119	2E-9		0.102	[0.069-0.135] unit decrease	Affymetrix, Illumina [7374092] (imputed)	N
593	chr6_apd_hap1	1154419	1154420	rs376253	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6p22.1	HLA-A	rs376253-A	NR	3E-10		0.0221166	[0.015-0.029] unit decrease	Affymetrix [321114] (imputed)	N
593	chr6_apd_hap1	1154659	1154660	rs17179564	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	82,810 East Asian ancestry individuals	NA	6p22.1		rs17179564-A	0.36573	6E-10		0.0301926	[0.021-0.04] unit increase	Illumina [13467171] (imputed)	N
593	chr6_apd_hap1	1154714	1154715	rs2735099	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p22.1	NR	rs2735099-T	0.417	3E-26	(IFNAR2_of_CD20p)			Illumina [5084123] (imputed)	N
593	chr6_apd_hap1	1154947	1154948	rs2248162	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	HLA-A	rs2248162-T	NR	3E-8		0.0179351	[0.012-0.024] unit decrease	Affymetrix [323858] (imputed)	N
593	chr6_apd_hap1	1155773	1155774	rs2517720	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6p22.1	HLA-A	rs2517720-C	0.555569	1E-14		0.022822132	[0.017-0.029] unit increase	Affymetrix [93095623] (imputed)	N
593	chr6_apd_hap1	1156690	1156691	rs1655901	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	6p22.1	HLA-A	rs1655901-C	0.557583	3E-22		0.02534704	[0.02-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
593	chr6_apd_hap1	1156771	1156772	rs9260313	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p22.1	HLA-A	rs9260313-C		5E-24		0.02	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
593	chr6_apd_hap1	1156771	1156772	rs9260313	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	6p22.1	HLA-A	rs9260313-C	0.2875	1E-15		0.03200038	[0.024-0.04] unit increase	Affymetrix [~ 2500000] (imputed)	N
593	chr6_apd_hap1	1156771	1156772	rs9260313	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	6p22.1	HLA-A	rs9260313-C	0.2876	1E-15		0.03178619	[0.024-0.04] unit increase	Affymetrix [~ 2500000] (imputed)	N
593	chr6_apd_hap1	1157989	1157990	rs2517713	19664746	Tse KP	2009-08-05	Am J Hum Genet	Genome-wide association study reveals multiple nasopharyngeal carcinoma-associated loci within the HLA region at chromosome 6p21.3.	Nasopharyngeal carcinoma	277 Han Chinese ancestry cases, 285 Han Chinese ancestry controls	635 Han Chinese ancestry cases, 1,640 Han Chinese ancestry controls	6p22.1	HLA-A	rs2517713-A	0.62	4E-20		1.88	[1.65-2.15]	Illumina [480365]	N
593	chr6_apd_hap1	1158999	1159000	rs9260426	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p22.1		rs9260426-?	NR	6E-27		0.0229231	[0.019-0.027] unit increase	Affymetrix [20259828] (imputed)	N
593	chr6_apd_hap1	1158999	1159000	rs9260426	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	6p22.1	HLA-A	rs9260426-A	0.498682	2E-8	(women)	0.0236393	[0.015-0.033] unit increase	NR [17166351] (imputed)	N
593	chr6_apd_hap1	1158999	1159000	rs9260426	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	6p22.1	HLA-A	rs9260426-A	0.498488	3E-11		0.020854	[0.014-0.027] unit increase	NR [17166351] (imputed)	N
593	chr6_apd_hap1	1159669	1159670	rs7747253	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	6p22.1	HLA-A	rs7747253-C	0.499099	1E-33		0.022146	[0.019-0.026] unit increase	NR [13737936] (imputed)	N
593	chr6_apd_hap1	1160222	1160223	rs9260489	23417110	Tin A	2013-02-16	Hum Genet	Genome-wide association study identified the human leukocyte antigen region as a novel locus for plasma beta-2 microglobulin.	Beta-2 microglubulin plasma levels	6,728 European ancestry individuals		6p22.1	HLA-A	rs9260489-G	0.58	2E-22		0.04	[0.032-0.048] unit decrease	Affymetrix [2500000] (imputed)	N
593	chr6_apd_hap1	1160222	1160223	rs9260489	22190364	Patsopoulos NA	2011-12-01	Ann Neurol	Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.	Multiple sclerosis	5,545 European ancestry cases, 12,153 European ancestry controls	NA	6p22.1	HLA-B	rs9260489-T	0.45	1E-11		1.21	[NR]	Affymetrix, Illumina [2529394]	N
593	chr6_apd_hap1	1160312	1160313	rs9260492	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p22.1		rs9260492-T	0.5	3E-19				Affymetrix [10369434] (imputed)	N
593	chr6_apd_hap1	1160603	1160604	rs9260500	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p22.1		rs9260500-T	0.5	2E-56				Affymetrix [10369434] (imputed)	N
593	chr6_apd_hap1	1160924	1160925	rs28749167	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	286 European ancestry cases, 2,652 European ancestry controls, 76 Han Chinese ancestry cases, 889 Han Chinese ancestry controls, 46 South Asian ancestry cases, 501 South Asian ancestry controls, 683 Turkish ancestry cases, 1,721 Turkish ancestry controls	NA	6p22.1	HLA-G	rs28749167-?	NR	2E-9	(conditional on rs2844678, rs12524487, rs17193507 and rs12526858)	1.43	NR	Illumina [up to 4495750] (imputed)	N
593	chr6_apd_hap1	1161063	1161064	rs9260526	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (underestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	6p22.1	NR	rs9260526-?	NR	5E-9		5.864	NR z score increase	Illumina [at least 830937] (imputed)	N
593	chr6_apd_hap1	1161350	1161351	rs137886986	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6p22.1	HLA-W	rs137886986-A	0.09576	8E-24		0.039658234	[0.032-0.047] unit increase	Affymetrix [93095623] (imputed)	N
593	chr6_apd_hap1	1162538	1162539	rs28780071	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	Intrinsic epigenetic age acceleration	34,461 European ancestry individuals	NA	6p22.1	NR	rs28780071-T	0.3313	4E-9		0.2035	[0.14-0.27] unit increase	Affymetrix, Illumina [7567980] (imputed)	N
593	chr6_apd_hap1	1162611	1162612	rs16896742	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NPTX1	5,365 Icelandic ancestry individuals	NA	6p22.1		rs16896742-G	0.4238	6E-28		0.206363	[0.17-0.24] unit decrease	Illumina [7506463] (imputed)	N
593	chr6_apd_hap1	1162611	1162612	rs16896742	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	6p22.1	HLA-A	rs16896742-G	0.38	3E-10		0.04	[0.028-0.052] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
593	chr6_apd_hap1	1162625	1162626	rs9260603	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p22.1	HLA-W	rs9260603-T	NR	2E-8		0.0159518	[0.01-0.021] unit increase	Affymetrix [319769] (imputed)	N
593	chr6_apd_hap1	1162625	1162626	rs9260603	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p22.1	HLA-W	rs9260603-T	NR	4E-8		0.0156092	[0.01-0.021] unit increase	Affymetrix [319769] (imputed)	N
593	chr6_apd_hap1	1162853	1162853	rs9280816	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	6p22.1		rs9280816-T	0.537249	2E-8		0.0232259	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
593	chr6_apd_hap1	1162853	1162853	rs9280816	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6p22.1		rs9280816-T	0.537249	8E-13		0.0289715	[0.021-0.037] unit increase	NR [11722792] (imputed)	N
593	chr6_apd_hap1	1162853	1162853	rs9280816	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	6p22.1		rs9280816-T	0.537257	5E-8		0.0221633	[0.014-0.03] unit increase	NR [11722792] (imputed)	N
593	chr6_apd_hap1	1162853	1162853	rs9280816	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very small VLDL	115,082 European ancestry individuals	NA	6p22.1		rs9280816-T	0.537249	3E-9		0.0244552	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
593	chr6_apd_hap1	1162957	1162958	rs9260619	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p22.1	NR	rs9260619-?	NR	3E-11		0.2395	[0.17-0.31] unit increase	Illumina [at least 560000] (imputed)	N
593	chr6_apd_hap1	1162962	1162963	rs9260620	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	6p22.1	HLA-W	rs9260620-G	0.3359	2E-74		0.06971236	[0.062-0.077] unit decrease	Affymetrix [~ 2500000] (imputed)	N
593	chr6_apd_hap1	1162962	1162963	rs9260620	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	6p22.1	HLA-W	rs9260620-G	0.3358	2E-44		0.05337227	[0.046-0.061] unit decrease	Affymetrix [~ 2500000] (imputed)	N
593	chr6_apd_hap1	1162962	1162963	rs9260620	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	6p22.1	HLA-W	rs9260620-G	0.3358	4E-40		0.05070884	[0.043-0.058] unit decrease	Affymetrix [~ 2500000] (imputed)	N
593	chr6_apd_hap1	1162962	1162963	rs9260620	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	6p22.1	HLA-W	rs9260620-G	0.3358	2E-39		0.05008696	[0.043-0.058] unit decrease	Affymetrix [~ 2500000] (imputed)	N
593	chr6_apd_hap1	1162962	1162963	rs9260620	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	6p22.1	HLA-W	rs9260620-G	0.3358	6E-51		0.05759035	[0.05-0.065] unit decrease	Affymetrix [~ 2500000] (imputed)	N
593	chr6_apd_hap1	1162962	1162963	rs9260620	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	6p22.1	HLA-W	rs9260620-G	0.3357	4E-53		0.05836372	[0.051-0.066] unit decrease	Affymetrix [~ 2500000] (imputed)	N
593	chr6_apd_hap1	1162962	1162963	rs9260620	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	6p22.1	HLA-W	rs9260620-G	0.3358	7E-45		0.05377813	[0.046-0.061] unit decrease	Affymetrix [~ 2500000] (imputed)	N
593	chr6_apd_hap1	1163118	1163119	rs7768235	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p22.1	HLA-W	rs7768235-C	0.514186	1E-16		0.022017317	[0.017-0.027] unit increase	Affymetrix [93095623] (imputed)	N
593	chr6_apd_hap1	1163118	1163119	rs7768235	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	6p22.1	HLA-W	rs7768235-C	0.514229	5E-14		0.02060967	[0.015-0.026] unit increase	Affymetrix [93095623] (imputed)	N
593	chr6_apd_hap1	1163118	1163119	rs7768235	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p22.1		rs7768235-?	NR	7E-25		0.0219262	[0.018-0.026] unit increase	Affymetrix [20259828] (imputed)	N
593	chr6_apd_hap1	1163221	1163222	rs2904758	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	6p22.1	HLA-W	rs2904758-A	0.7187	6E-17		0.03315845	[0.025-0.041] unit decrease	Affymetrix [~ 2500000] (imputed)	N
593	chr6_apd_hap1	1163293	1163294	rs9260639	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	6p22.1	HLA-W	rs9260639-T	0.1389	2E-14		0.03938988	[0.029-0.05] unit increase	Affymetrix [~ 2500000] (imputed)	N
593	chr6_apd_hap1	1163373	1163374	rs2571389	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p22.1		rs2571389-T	0.5	1E-30				Affymetrix [10369434] (imputed)	N
593	chr6_apd_hap1	1163424	1163425	rs2571390	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8 on Effector Memory CD8+ T cell	2,912 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p22.1		rs2571390-C	0.82253	6E-22		0.3643	[0.29-0.44] unit increase	Illumina [17945888] (imputed)	N
593	chr6_apd_hap1	1163712	1163713	rs2571391	22075330	Granada M	2011-11-08	J Allergy Clin Immunol	A genome-wide association study of plasma total IgE concentrations in the Framingham Heart Study.	IgE levels	6,819 European ancestry individuals	7,809 European ancestry indivduals	6p22.1	HLA-A	rs2571391-C	NR	1E-15		0.06	[NR] unit increase	Affymetrix [2540223] (imputed)	N
593	chr6_apd_hap1	1164093	1164094	rs2571392	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	6p22.1	HLA-W	rs2571392-A	0.314446	4E-11		0.023026897	[0.016-0.03] unit increase	Affymetrix [93095623] (imputed)	N
593	chr6_apd_hap1	1164167	1164168	rs73725598	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	6p22.1	HLA-W	rs73725598-C	0.0934	2E-9		0.03755279	[0.025-0.05] unit decrease	Affymetrix [~ 2500000] (imputed)	N
593	chr6_apd_hap1	1164240	1164241	rs2571394	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TAPBPL	5,368 Icelandic ancestry individuals	NA	6p22.1		rs2571394-G	0.3722	1E-15		0.160938	[0.12-0.2] unit decrease	Illumina [7506463] (imputed)	N
593	chr6_apd_hap1	1164291	1164292	rs17179851	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Gynecologic disease	7,975 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs17179851-?		7E-8		1.11	[1.07-1.15]	Illumina [7645193] (imputed)	N
593	chr6_apd_hap1	1164291	1164292	rs17179851	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Gynecologic disease	7,315 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs17179851-?		7E-7				Illumina [7645193] (imputed)	N
593	chr6_apd_hap1	1164393	1164394	rs1808199	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	6p22.1	HLA-W	rs1808199-T	0.092214	4E-22		0.03959165	[0.032-0.048] unit decrease	Affymetrix [93095623] (imputed)	N
593	chr6_apd_hap1	1164954	1164955	rs114193679	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mumps	31,227 European ancestry cases, 54,153 European ancestry controls	NA	6p22.1	HLA-A	rs114193679-G	0.99	2E-17		1.72	[1.62-1.84]	Illumina [at least 560000] (imputed)	N
593	chr6_apd_hap1	1165119	1165120	rs17186335	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p22.1	NR	rs17186335-?	NR	3E-8		0.0898	[0.058-0.122] unit decrease	Illumina [at least 560000] (imputed)	N
593	chr6_apd_hap1	1165728	1165729	rs62392216	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	57 Italian ancestry cases, 931 Italian ancestry controls	NA	6p22.1	HLA-B	rs62392216-?	NR	1E-11				Illumina [4425173] (imputed)	N
593	chr6_apd_hap1	1165728	1165729	rs62392216	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	229 European ancestry cases, 1,088 European ancestry controls	NA	6p22.1	HLA-G	rs62392216-?	NR	3E-11	(conditional on rs12524487)			Illumina [4388215] (imputed)	N
593	chr6_apd_hap1	1166228	1166229	rs9260679	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	6p22.1	NR	rs9260679-?	NR	9E-90		20.092	NR z score increase	Illumina [at least 830937] (imputed)	N
593	chr6_apd_hap1	1166946	1166947	rs2735085	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	HLA-W	rs2735085-A	NR	5E-8		0.0198962	[0.013-0.027] unit decrease	Affymetrix [321016] (imputed)	N
593	chr6_apd_hap1	1167133	1167134	rs114577328	28043905	Nicoletti P	2016-12-30	Gastroenterology	Association of Liver Injury From Specific Drugs, or Groups of Drugs, With Polymorphisms in HLA and Other Genes in a Genome-Wide Association Study.	Drug-induced liver injury	862 European ancestry cases and 10,588 European ancestry controls	NA	6p22.1	MHC	rs114577328-?	0.01	2E-8		2.7	1.9-3.8	Illumina [505740] (imputed)	N
593	chr6_apd_hap1	1167573	1167574	rs2571400	34642315	Ferreiro-Iglesias A	2021-10-12	Nat Commun	Germline determinants of humoral immune response to HPV-16 protect against oropharyngeal cancer.	Human papilloma virus 16 positive oropharyngeal cancer	1,078 European ancestry cases, 5,256 European ancestry controls	NA	6p22.1		rs2571400-G	NR	3E-6		1.2905		Illumina [7574753] (imputed)	N
593	chr6_apd_hap1	1167573	1167574	rs2571400	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	HLA-W	rs2571400-C	NR	5E-8		5.453	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
593	chr6_apd_hap1	1168925	1168926	rs2517690	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p22.1	NR	rs2517690-?	NR	7E-9				Affymetrix [~ 8270000] (imputed)	N
593	chr6_apd_hap1	1170791	1170792	rs56262516	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8 on CD28- CD8+ T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p22.1		rs56262516-A	0.27456	1E-11		0.23	[0.16-0.3] unit increase	Illumina [17954496] (imputed)	N
593	chr6_apd_hap1	1170791	1170792	rs56262516	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8 on CD28+ CD45RA- CD8+ T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p22.1		rs56262516-A	0.27456	7E-13		0.2531	[0.18-0.32] unit increase	Illumina [17954496] (imputed)	N
593	chr6_apd_hap1	1171197	1171198	rs192543598	31066027	Nicoletti P	2019-05-07	Clin Pharmacol Ther	Shared genetic risk factors across carbamazepine-induced hypersensitivity reactions.	Carbamazepine-induced serious cutaneous adverse reaction	43 European ancestry cases, 10,701 European ancestry controls	NA	6p22.1	NR	rs192543598-G	0.01	2E-12		18.11	[8.03-40.88]	Illumina [5271349] (imputed)	N
593	chr6_apd_hap1	1171757	1171758	rs2517683	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	6p22.1	HLA-W	rs2517683-C	NR	5E-10		0.0183528	[0.013-0.024] unit decrease	Affymetrix [321788] (imputed)	N
593	chr6_apd_hap1	1172144	1172145	rs2523933	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	HLA-W	rs2523933-T	NR	2E-9		6.01	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
593	chr6_apd_hap1	1173077	1173078	rs2517678	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	6p22.1	intergenic	rs2517678-T	0.3811	2E-9		0.02249725	[0.015-0.03] unit increase	Affymetrix [~ 2500000] (imputed)	N
593	chr6_apd_hap1	1173113	1173114	rs6457109	33574277	Kawai Y	2021-02-11	NPJ Genom Med	Mapping of susceptible variants for cold medicine-related Stevens-Johnson syndrome by whole-genome resequencing.	Cold medicine-related Stevens-Johnson syndrome/toxic epidermal necrolysis (SJS/TEN) with severe ocular complications	133 Japanese ancestry cases, 418 Japanese ancestry controls	NA	6p22.1		rs6457109-C	0.2519	3E-16		4.516		Illumina [7608150]	N
593	chr6_apd_hap1	1173871	1173872	rs6914699	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	MICD	rs6914699-T	NR	3E-8		5.569	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
594	chr6_apd_hap1	1199850	1199851	rs7749944	30850646	Tziotzios C	2019-03-08	Nat Commun	Genome-wide association study in frontal fibrosing alopecia identifies four susceptibility loci including HLA-B*07:02.	Frontal fibrosing alopecia	1,016 European ancestry cases, 4,145 European ancestry controls		6p22.1	NR	rs7749944-?	0.006	8E-42		10.06	[7.2-14.1]	Illumina [~ 8000000] (imputed)	N
594	chr6_apd_hap1	1204679	1204680	rs12110437	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	76 Han Chinese ancestry cases, 889 Han Chinese ancestry controls	NA	6p22.1	HLA-G	rs12110437-?	NR	2E-10				Illumina [3403929] (imputed)	N
594	chr6_apd_hap1	1210439	1210440	rs7758512	20041166	Fellay J	2009-12-24	PLoS Genet	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	6p22.1	HLA-A, ZNRD1, RNF39	rs7758512-?	NR	2E-8	(progression)			Illumina [NR]	N
594	chr6_apd_hap1	1210811	1210812	rs3094146	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total concentration of lipoprotein particles	115,082 European ancestry individuals	NA	6p22.1		rs3094146-G	0.871463	2E-9		0.0352048	[0.024-0.047] unit increase	NR [11722792] (imputed)	N
594	chr6_apd_hap1	1210811	1210812	rs3094146	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Polyunsaturated fatty acid levels	115,006 European ancestry individuals	NA	6p22.1		rs3094146-G	0.871472	2E-13		0.0443955	[0.033-0.056] unit increase	NR [11722792] (imputed)	N
594	chr6_apd_hap1	1210811	1210812	rs3094146	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6p22.1		rs3094146-G	0.871463	1E-8		0.0355971	[0.023-0.048] unit decrease	NR [11722792] (imputed)	N
594	chr6_apd_hap1	1210811	1210812	rs3094146	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphoglycerides levels	115,006 European ancestry individuals	NA	6p22.1		rs3094146-G	0.871472	3E-10		0.0370038	[0.026-0.049] unit increase	NR [11722792] (imputed)	N
594	chr6_apd_hap1	1210811	1210812	rs3094146	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphatidylcholine levels	115,006 European ancestry individuals	NA	6p22.1		rs3094146-G	0.871472	3E-9		0.0343894	[0.023-0.046] unit increase	NR [11722792] (imputed)	N
594	chr6_apd_hap1	1210811	1210812	rs3094146	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	6p22.1		rs3094146-G	0.871463	5E-10		0.0351913	[0.024-0.046] unit increase	NR [11722792] (imputed)	N
594	chr6_apd_hap1	1210811	1210812	rs3094146	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium HDL particles	115,082 European ancestry individuals	NA	6p22.1		rs3094146-G	0.871463	2E-11		0.0384568	[0.027-0.05] unit increase	NR [11722792] (imputed)	N
594	chr6_apd_hap1	1210811	1210812	rs3094146	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of HDL particles	115,082 European ancestry individuals	NA	6p22.1		rs3094146-G	0.871463	4E-10		0.0365016	[0.025-0.048] unit increase	NR [11722792] (imputed)	N
594	chr6_apd_hap1	1210811	1210812	rs3094146	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	6p22.1		rs3094146-G	0.871463	2E-9		0.034562	[0.023-0.046] unit increase	NR [11722792] (imputed)	N
594	chr6_apd_hap1	1210811	1210812	rs3094146	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein A1 levels	115,082 European ancestry individuals	NA	6p22.1		rs3094146-G	0.871463	9E-11		0.036855	[0.026-0.048] unit increase	NR [11722792] (imputed)	N
594	chr6_apd_hap1	1210811	1210812	rs3094146	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p22.1	ZNRD1-AS1	rs3094146-C	NR	4E-10		0.0289428	[0.02-0.038] unit decrease	Affymetrix [323858] (imputed)	N
594	chr6_apd_hap1	1210811	1210812	rs3094146	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Help-seeking from a GP (without major depressive disorder symptoms)	8,632 British ancestry cases, 49,493 British ancestry controls	NA	6p22.1	NR	rs3094146-G	0.87	5E-8		1.1494253	[1.10-1.20]	NR [5276842] (imputed)	N
594	chr6_apd_hap1	1210811	1210812	rs3094146	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p22.1	NR	rs3094146-C	0.1057	7E-7	(EA)	0.0543	[0.033-0.076] unit decrease	Illumina [~ 11800000] (imputed)	N
594	chr6_apd_hap1	1213772	1213773	rs4313034	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p22.1		rs4313034-T	0.825373	2E-18		1.048594	[1.04-1.06]	Affymetrix, Illumina [9851866] (imputed)	N
594	chr6_apd_hap1	1213772	1213773	rs4313034	21900946	Nakabayashi K	2011-09-08	J Hum Genet	Identification of independent risk loci for Graves' disease within the MHC in the Japanese population.	Graves' disease	1,119 Japanese ancestry cases, 2,718 Japanese ancestry controls	432 Japanese ancestry cases, 1,157 Japanese ancestry controls	6p22.1	MHC	rs4313034-T	0.83	2E-15		1.67	[1.47-1.90]	Perlegen [268068]	N
594	chr6_apd_hap1	1217716	1217717	rs886997	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Asthma	13,015 East Asian ancestry cases, 162,933 East Asian ancestry controls	NA	6p22.1		rs886997-T	0.201391947	2E-10		0.10704092	[0.074-0.14] unit increase	Illumina [13429513] (imputed)	N
594	chr6_apd_hap1	1218199	1218200	rs4713281	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p22.1	HLA-J, NCRNA00171	rs4713281-A	0.28	1E-6	(EA)	1.97	[1.49-2.59]	Illumina [up to 547389]	N
594	chr6_apd_hap1	1226189	1226190	rs3115631	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	ZNRD1-AS1	rs3115631-A	NR	4E-17		0.0400652	[0.031-0.049] unit decrease	Affymetrix [323858] (imputed)	N
594	chr6_apd_hap1	1226189	1226190	rs3115631	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	ZNRD1-AS1	rs3115631-A	NR	2E-16		0.0390685	[0.03-0.048] unit decrease	Affymetrix [127266] (imputed)	N
594	chr6_apd_hap1	1226189	1226190	rs3115631	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Major depressive disorder (lifetime)	16,301 British ancestry cases, 50,870 British ancestry controls	NA	6p22.1	NR	rs3115631-?	NR	4E-7		1.1037527	[1.06-1.15]	NR [5276842] (imputed)	N
594	chr6_apd_hap1	1226189	1226190	rs3115631	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Help-seeking from a GP	113,262 British ancestry cases, 219,360 British ancestry controls	NA	6p22.1	NR	rs3115631-T	0.874	3E-13		1.059322	[1.04-1.08]	NR [5276842] (imputed)	N
594	chr6_apd_hap1	1241901	1241902	rs62388754	30850646	Tziotzios C	2019-03-08	Nat Commun	Genome-wide association study in frontal fibrosing alopecia identifies four susceptibility loci including HLA-B*07:02.	Frontal fibrosing alopecia	1,016 European ancestry cases, 4,145 European ancestry controls		6p22.1	NR	rs62388754-?	0.058	5E-32		2.76	[2.33-3.27]	Illumina [~ 8000000] (imputed)	N
594	chr6_apd_hap1	1245951	1245952	rs4711207	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Allergic rhinitis	4,387 European ancestry cases, 471,273 European ancestry controls, 7,897 East Asian ancestry cases, 153,666 East Asian ancestry controls	NA	6p22.1		rs4711207-A	NR	2E-8		0.087	[0.057-0.117] unit decrease	Affymetrix, Illumina [25843170] (imputed)	N
594	chr6_apd_hap1	1245951	1245952	rs4711207	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p22.1	NR	rs4711207-A	0.366	3E-19	(IFNAR2_of_CD20p)			Illumina [5084123] (imputed)	N
594	chr6_apd_hap1	1248950	1248951	rs3910312	35232999	Garcia-Etxebarria K	2022-03-01	Sci Rep	Local genetic variation of inflammatory bowel disease in Basque population and its effect in risk prediction.	Ulcerative colitis	208 European ancestry cases, 935 European ancestry controls	NA	6p22.1		rs3910312-C	0.255	7E-7		1.8		Illumina [5409651] (imputed)	N
594	chr6_apd_hap1	1254093	1254094	rs9261224	31217265	Sliz E	2019-06-19	J Med Genet	Genome-wide association study identifies seven novel loci associating with circulating cytokines and cell adhesion molecules in Finns.	Interleukin-1-beta levels	13,577 Finnish ancestry individuals	NA	6p22.1	HLA	rs9261224-T	0.035	1E-9		0.261	unit increase	Illumina [NR] (imputed)	N
594	chr6_apd_hap1	1257285	1257286	rs6917603	31217265	Sliz E	2019-06-19	J Med Genet	Genome-wide association study identifies seven novel loci associating with circulating cytokines and cell adhesion molecules in Finns.	Interleukin-1-beta levels	13,577 Finnish ancestry individuals	NA	6p22.1	HLA	rs6917603-C	0.251	2E-12		0.163	unit decrease	Illumina [NR] (imputed)	N
594	chr6_apd_hap1	1257285	1257286	rs6917603	22286219	Kettunen J	2012-01-29	Nat Genet	Genome-wide association study identifies multiple loci influencing human serum metabolite levels.	Lipid metabolism phenotypes	8,330 European ancestry individuals	NA	6p22.1	PPP1R11	rs6917603-?	NR	3E-29	(XXL-VLDL-P)	0.24	[0.2-0.28] unit decrease	Illumina [~ 7700000] (imputed)	N
594	chr6_apd_hap1	1263315	1263316	rs9261259	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	ZNRD1-AS1	rs9261259-C	NR	2E-16		0.0319539	[0.024-0.04] unit decrease	Affymetrix [127266] (imputed)	N
594	chr6_apd_hap1	1265739	1265740	rs259919	32276964	Shete S	2020-04-10	Cancer Res	A genome-wide association study identifies two novel susceptible regions for squamous cell carcinoma of the head and neck.	Head and neck squamous cell carcinoma	2,171 European ancestry cases, 4,493 European ancestry controls	5,205 European ancestry cases, 3,232 European ancestry controls	6p22.1	ZNRD1-AS1	rs259919-A	0.28	3E-9		1.17	[1.11-1.24]	Illumina [7858089] (imputed)	N
594	chr6_apd_hap1	1265739	1265740	rs259919	20041166	Fellay J	2009-12-24	PLoS Genet	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	6p22.1	ZNRD1, C6orf12	rs259919-?	NR	3E-7	(setpoint)			Illumina [NR]	N
594	chr6_apd_hap1	1270350	1270351	rs9261269	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p22.1	ZintergenicD1	rs9261269-A		4E-32		0.038	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
594	chr6_apd_hap1	1272752	1272753	rs8321	23453885	Smoller JW	2013-02-27	Lancet	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NA	6p22.1	MHC region	rs8321-?	NR	8E-9	(5 degree of freedom test)	1.081	[1.04-1.12]	NR [1252901] (imputed)	N
594	chr6_apd_hap1	1272752	1272753	rs8321	19115949	Limou S	2009-01-01	J Infect Dis	Genomewide association study of an AIDS-nonprogression cohort emphasizes the role played by HLA genes (ANRS Genomewide Association Study 02).	AIDS progression	275 European ancestry seropositive non-progressors, 86 European ancestry seropositive rapid progressors, 1,352 European ancestry seronegative controls	(see Fellay 2007)	6p22.1	ZNRD1, RNF39	rs8321-G	NR	5E-7				Illumina [291119]	N
594	chr6_apd_hap1	1275571	1275572	rs9261281	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p22.1		rs9261281-?	NR	1E-9		0.0377761	[0.026-0.05] unit increase	Affymetrix [20259828] (imputed)	N
594	chr6_apd_hap1	1278220	1278221	rs6539	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	6p22.1	NR	rs6539-?	NR	3E-6		0.0618	[0.036-0.088] unit increase	Illumina [at least 560000] (imputed)	N
594	chr6_apd_hap1	1279470	1279471	rs2301753	26534935	Weng L	2015-11-03	Physiol Genomics	Genetic loci associated with nonobstructive coronary artery disease in Caucasian women.	Nonobstructive coronary artery disease	332 European ancestry female cases, 1,003 European ancestry female controls	NA	6p22.1	RNF39	rs2301753-?	0.883	7E-7		2.5	[1.75-3.57]	Illumina [52371]	N
594	chr6_apd_hap1	1280521	1280522	rs10947050	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Chickenpox	107,769 European ancestry cases, 15,982 European ancestry controls	NA	6p22.1	NR	rs10947050-?	NR	1E-10		0.0904	[0.063-0.118] unit decrease	Illumina [at least 560000] (imputed)	N
594	chr6_apd_hap1	1283230	1283231	rs142979264	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs142979264-?		6E-8		1.06	[1.04-1.09]	Illumina [7645193] (imputed)	N
594	chr6_apd_hap1	1283230	1283231	rs142979264	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs142979264-?		7E-9		1.84	[1.50-2.26]	Illumina [7645193] (imputed)	N
594	chr6_apd_hap1	1284618	1284619	rs3132682	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	6p22.1	RNF39	rs3132682-C	0.5898	2E-30		0.04162196	[0.035-0.049] unit increase	Affymetrix [~ 2500000] (imputed)	N
594	chr6_apd_hap1	1285429	1285430	rs1150735	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	RNF39	rs1150735-A	NR	5E-8		5.462	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
594	chr6_apd_hap1	1286228	1286229	rs1245372	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of linoleic acid to total fatty acids	115,006 European ancestry individuals	NA	6p22.1		rs1245372-A	0.830801	3E-8		0.029543	[0.019-0.04] unit decrease	NR [11722792] (imputed)	N
594	chr6_apd_hap1	1293172	1293173	rs1264712	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	AL669914.1	rs1264712-A	NR	9E-17		0.0323321	[0.025-0.04] unit decrease	Affymetrix [323858] (imputed)	N
594	chr6_apd_hap1	1293172	1293173	rs1264712	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p22.1	AL669914.1	rs1264712-A	NR	4E-10		0.0241409	[0.017-0.032] unit decrease	Affymetrix [323858] (imputed)	N
594	chr6_apd_hap1	1296040	1296041	rs142292417	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	6p22.1		rs142292417-T	0.984003	1E-8		0.0906224	[0.059-0.122] unit increase	NR [11722792] (imputed)	N
594	chr6_apd_hap1	1300276	1300277	rs3132681	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p22.1		rs3132681-C	0.603	1E-38				Affymetrix [10369434] (imputed)	N
594	chr6_apd_hap1	1300276	1300277	rs3132681	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	ENSG00000252901	rs3132681-A	NR	2E-8		5.598	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
594	chr6_apd_hap1	1301604	1301605	rs9261387	28394258	Wild PS	2017-04-10	J Clin Invest	Large-scale genome-wide analysis identifies genetic variants associated with cardiac structure and function.	Isovolumetric relaxation time	21,852 European ancestry individuals	14,787 European ancestry individuals	6p22.1	TRIM31	rs9261387-C	0.92	7E-7		0.003	[0.001-0.005] unit increase	Affymetrix, Illumina [at least 283291] (imputed)	N
594	chr6_apd_hap1	1303912	1303913	rs1264705	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium HDL	115,082 European ancestry individuals	NA	6p22.1		rs1264705-G	0.868792	2E-12		0.0396576	[0.029-0.051] unit increase	NR [11722792] (imputed)	N
594	chr6_apd_hap1	1305391	1305392	rs1156533	33888516	Zheng T	2021-04-22	Gut	Genome-wide analysis of 944 133 individuals provides insights into the etiology of haemorrhoidal disease.	Haemorrhoidal disease	218,920 European ancestry cases, 725,213 European ancestry controls	NA	6p22.1	TRIM31	rs1156533-?	0.2952	2E-8		0.98	[0.97-0.98]	Affymetrix, Illumina [8494288] (imputed)	N
594	chr6_apd_hap1	1305785	1305786	rs17187854	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	6p22.1	intergenic	rs17187854-T	0.0032	3E-12		0.2201749	[0.16-0.28] unit decrease	Affymetrix [~ 2500000] (imputed)	N
594	chr6_apd_hap1	1306273	1306274	rs916570	31272903	Sunadome H	2019-07-01	Allergol Int	Correlation between eosinophil count, its genetic background and body mass index: The Nagahama Study.	Eosinophil counts	4,650 East Asian ancestry individuals	NA	6p22.1	NR	rs916570-G	0.19	1E-7		0.1384	NR unit increase	Illumina [103680] (imputed)	N
594	chr6_apd_hap1	1306273	1306274	rs916570	31272903	Sunadome H	2019-07-01	Allergol Int	Correlation between eosinophil count, its genetic background and body mass index: The Nagahama Study.	Eosinophil counts	4,206 East Asian ancestry individuals	NA	6p22.1	NR	rs916570-G	0.19	3E-7		0.1428	NR unit increase	Illumina [103680] (imputed)	N
594	chr6_apd_hap1	1307224	1307226	rs143211693	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	6p22.1	Intergenic	rs143211693-?	NR	5E-6		0.0195207	[0.011-0.028] unit increase	Illumina [13519193] (imputed)	N
594	chr6_apd_hap1	1307224	1307226	rs143211693	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p22.1	Intergenic	rs143211693-?	NR	2E-6		0.0186889	[0.011-0.026] unit increase	Illumina [13520550] (imputed)	N
594	chr6_apd_hap1	1307224	1307226	rs143211693	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	6p22.1	Intergenic	rs143211693-?	NR	4E-9		0.026814	[0.018-0.036] unit increase	Illumina [13520550] (imputed)	N
594	chr6_apd_hap1	1307798	1307799	rs1264697	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	76 Han Chinese ancestry cases, 889 Han Chinese ancestry controls	NA	6p22.1	TRIM31	rs1264697-?	NR	1E-8	(conditional on rs12110437)			Illumina [3403929] (imputed)	N
595	chr6_apd_hap1	1318504	1318505	rs2523989	33909500	Moll M	2021-04-28	Am J Physiol Lung Cell Mol Physiol	A Systematic Analysis of Protein-altering Exonic Variants in Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease	up to 31,465 European ancestry cases, up to 203,688 European ancestry controls, up to 1,413 African ancestry cases, up to 6,080 African ancestry controls, up to 287 East Asian ancestry cases, up to 7,484 East Asian ancestry controls, up to 61 Hispanic cases, up to 613 Hispanic controls	NA	6p22.1	TRIM31	rs2523989-T	0.17	1E-10		1.09	[1.06 -1.12]	Illumina [at least 109036]	N
595	chr6_apd_hap1	1318504	1318505	rs2523989	25936594	Tomer Y	2015-04-27	J Autoimmun	Genome wide identification of new genes and pathways in patients with both autoimmune thyroiditis and type 1 diabetes.	Type 1 diabetes and autoimmune thyroid diseases	346 European ancestry cases, 727 European ancestry controls	185 European ancestry cases, 340 European ancestry controls	6p22.1	TRIM31	rs2523989-A	NR	2E-8		1.7499		Illumina [514008]	N
595	chr6_apd_hap1	1320221	1320222	rs2523987	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p22.1	TRIM31, TRIM31-AS1, TRIM40, SNORA48	rs2523987-C	0.1149598	2E-13	(EA, MHC class I polypeptide-related sequence A)	0.4957	[0.36-0.63] unit increase	Affymetrix [509946]	N
595	chr6_apd_hap1	1320597	1320598	rs34704616	20125193	Cirulli ET	2010-02-03	Eur J Hum Genet	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American individuals, up to 74 South Asian ancestry individuals	NA	6p22.1	XXbac-BPG250I8.13	rs34704616-?	NR	6E-6	(Colorword)			Illumina [up to 563855]	N
595	chr6_apd_hap1	1321336	1321337	rs9261425	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	6p22.1	NR	rs9261425-?	NR	6E-7		0.0545	[0.033-0.076] unit increase	Illumina [at least 560000] (imputed)	N
595	chr6_apd_hap1	1321970	1321971	rs28780084	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p22.1	NR	rs28780084-?	NR	9E-8		0.0841	[0.053-0.115] unit decrease	Illumina [at least 560000] (imputed)	N
595	chr6_apd_hap1	1323936	1323937	rs2523978	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	6p22.1	TRIM31	rs2523978-C	0.869967	4E-24		0.0286531	[0.023-0.034] unit increase	Affymetrix [NR] (imputed)	N
595	chr6_apd_hap1	1323936	1323937	rs2523978	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	6p22.1	TRIM31	rs2523978-C	0.869885	7E-28		0.031888	[0.026-0.038] unit increase	Affymetrix [NR] (imputed)	N
595	chr6_apd_hap1	1326650	1326651	rs9261431	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p22.1	NR	rs9261431-?	NR	2E-19		0.1221	[0.095-0.149] unit increase	Illumina [at least 560000] (imputed)	N
595	chr6_apd_hap1	1327837	1327838	rs115254023	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6p22.1		rs115254023-T	0.018886	8E-29		0.092888236	[0.077-0.109] unit increase	Affymetrix [93095623] (imputed)	N
595	chr6_apd_hap1	1333166	1333167	rs1419674	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p22.1	NR	rs1419674-T	0.02787	7E-9	(SBDS)	0.03953	NR unit increase	Illumina [1671387] (imputed)	N
595	chr6_apd_hap1	1333368	1333369	rs2517592	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	SNORA48	rs2517592-T	NR	5E-8		5.465	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
595	chr6_apd_hap1	1333595	1333596	rs10947055	21348951	Parsa A	2011-02-01	Clin Transl Sci	Hypertrophy-associated polymorphisms ascertained in a founder cohort applied to heart failure risk and mortality.	Cardiac hypertrophy	851 Old Order Amish individuals	NA	6p22.1	TRIM38	rs10947055-?	NR	2E-7	(additive, recessive)			Affymetrix [361034]	N
595	chr6_apd_hap1	1334344	1334345	rs2844790	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	SNORA48	rs2844790-C	NR	4E-10		6.271	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
595	chr6_apd_hap1	1334344	1334345	rs2844790	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p22.1	NR	rs2844790-?	NR	1E-8		0.1888	[0.12-0.25] unit increase	Illumina [at least 560000] (imputed)	N
595	chr6_apd_hap1	1345388	1345389	rs28780086	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	6p22.1	TRIM40	rs28780086-G	0.023328	1E-25		0.078185886	[0.064-0.093] unit increase	Affymetrix [93095623] (imputed)	N
595	chr6_apd_hap1	1345388	1345389	rs28780086	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	6p22.1	TRIM40	rs28780086-G	0.023332	8E-30		0.093978085	[0.078-0.11] unit decrease	Affymetrix [93095623] (imputed)	N
595	chr6_apd_hap1	1348917	1348918	rs9261484	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	6p22.1	TRIM40	rs9261484-T	0.2451	2E-8		0.0635	[0.042-0.085] unit decrease	NR [7784415] (imputed)	N
595	chr6_apd_hap1	1351093	1351093	rs146464922	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	6p22.1	TRIM40	rs146464922-CTT	0.014425	8E-11		0.05988576	[0.042-0.078] unit increase	Affymetrix [93095623] (imputed)	N
595	chr6_apd_hap1	1351305	1351306	rs117432766	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6p22.1	TRIM40	rs117432766-A	0.016714	1E-25		0.09170394	[0.075-0.109] unit increase	Affymetrix [93095623] (imputed)	N
595	chr6_apd_hap1	1353784	1353785	rs12202131	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6p22.1	TRIM40	rs12202131-A	0.052983	2E-12		0.06297606	[0.045-0.081] unit increase	Affymetrix [93095623] (imputed)	N
595	chr6_apd_hap1	1354189	1354190	rs3815082	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p22.1	NR	rs3815082-G	0.295	9E-12	(IFNAR2_of_CD20p)			Illumina [5084123] (imputed)	N
595	chr6_apd_hap1	1354541	1354542	rs2256146	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p22.1	NR	rs2256146-C	0.02787	7E-9	(SBDS)	0.03953	NR unit increase	Illumina [1671387] (imputed)	N
595	chr6_apd_hap1	1360124	1360125	rs9468692	20041166	Fellay J	2009-12-24	PLoS Genet	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	6p22.1	TRIM10	rs9468692-?	NR	1E-6	(setpoint)			Illumina [NR]	N
595	chr6_apd_hap1	1360871	1360872	rs9468693	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	6p22.1	TRIM10	rs9468693-C	0.071694	2E-29		0.0510031	[0.043-0.059] unit decrease	Affymetrix [93095623] (imputed)	N
595	chr6_apd_hap1	1361694	1361695	rs2022065	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	6p22.1	TRIM10	rs2022065-T	0.296544	2E-49		0.041531093	[0.036-0.047] unit decrease	Affymetrix [93095623] (imputed)	N
595	chr6_apd_hap1	1361694	1361695	rs2022065	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6p22.1	TRIM10	rs2022065-T	0.296544	4E-41		0.041549113	[0.035-0.048] unit decrease	Affymetrix [93095623] (imputed)	N
595	chr6_apd_hap1	1361694	1361695	rs2022065	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	6p22.1	TRIM10	rs2022065-T	0.296537	4E-62		0.05393633	[0.048-0.06] unit decrease	Affymetrix [93095623] (imputed)	N
595	chr6_apd_hap1	1361694	1361695	rs2022065	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	6p22.1	TRIM10	rs2022065-T	0.2963	3E-25		0.04064069	[0.033-0.048] unit decrease	Affymetrix [~ 2500000] (imputed)	N
595	chr6_apd_hap1	1361694	1361695	rs2022065	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	6p22.1	TRIM10	rs2022065-T	0.2963	1E-23		0.03931364	[0.032-0.047] unit decrease	Affymetrix [~ 2500000] (imputed)	N
595	chr6_apd_hap1	1361694	1361695	rs2022065	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	6p22.1	TRIM10	rs2022065-T	0.2963	3E-30		0.04433495	[0.037-0.052] unit decrease	Affymetrix [~ 2500000] (imputed)	N
595	chr6_apd_hap1	1361694	1361695	rs2022065	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	6p22.1	TRIM10	rs2022065-T	0.2962	2E-35		0.04860256	[0.041-0.056] unit decrease	Affymetrix [~ 2500000] (imputed)	N
595	chr6_apd_hap1	1361694	1361695	rs2022065	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	6p22.1	TRIM10	rs2022065-T	0.2962	1E-34		0.04804721	[0.04-0.056] unit decrease	Affymetrix [~ 2500000] (imputed)	N
595	chr6_apd_hap1	1362627	1362628	rs116596081	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	6p22.1	TRIM10	rs116596081-A	0.011844	3E-46		0.14981039	[0.13-0.17] unit decrease	Affymetrix [93095623] (imputed)	N
595	chr6_apd_hap1	1362627	1362628	rs116596081	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6p22.1	TRIM10	rs116596081-A	0.0118470000000001	6E-38		0.13759963	[0.12-0.16] unit decrease	Affymetrix [93095623] (imputed)	N
595	chr6_apd_hap1	1365045	1365046	rs144731721	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Red cell distribution width	441,263 European ancestry individuals	NA	6p22.1		rs144731721-?	NR	1E-14		0.080611	[0.059-0.102] unit increase	NR [9800000] (imputed)	N
595	chr6_apd_hap1	1365045	1365046	rs144731721	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean reticulocyte volume	436,944 European ancestry individuals	NA	6p22.1		rs144731721-?	NR	1E-42		0.142474	[0.12-0.16] unit increase	NR [9800000] (imputed)	N
595	chr6_apd_hap1	1365045	1365046	rs144731721	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	6p22.1	TRIM10	rs144731721-T	0.00866500000000004	5E-16		0.096417926	[0.073-0.12] unit increase	Affymetrix [93095623] (imputed)	N
595	chr6_apd_hap1	1365045	1365046	rs144731721	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	6p22.1	TRIM10	rs144731721-T	0.00867700000000005	2E-39		0.15744652	[0.13-0.18] unit increase	Affymetrix [93095623] (imputed)	N
595	chr6_apd_hap1	1365045	1365046	rs144731721	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	6p22.1	TRIM10	rs144731721-T	0.00866699999999998	6E-12		0.083550446	[0.06-0.107] unit increase	Affymetrix [93095623] (imputed)	N
595	chr6_apd_hap1	1365045	1365046	rs144731721	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	6p22.1	TRIM10	rs144731721-T	0.0068	4E-11		0.1617919	[0.11-0.21] unit increase	Affymetrix [~ 2500000] (imputed)	N
595	chr6_apd_hap1	1366855	1366856	rs116113631	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	6p22.1	TRIM10	rs116113631-T	0.010294	3E-68		0.19197759	[0.17-0.21] unit decrease	Affymetrix [93095623] (imputed)	N
595	chr6_apd_hap1	1366855	1366856	rs116113631	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6p22.1	TRIM10	rs116113631-T	0.010297	3E-66		0.19043158	[0.17-0.21] unit decrease	Affymetrix [93095623] (imputed)	N
595	chr6_apd_hap1	1367792	1367792	rs148280884	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	6p22.1	TRIM10	rs148280884-CAT	0.0122	4E-25		0.1718773	[0.14-0.2] unit decrease	Affymetrix [~ 2500000] (imputed)	N
595	chr6_apd_hap1	1367792	1367792	rs148280884	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	6p22.1	TRIM10	rs148280884-CAT	0.0122	2E-27		0.1797411	[0.15-0.21] unit decrease	Affymetrix [~ 2500000] (imputed)	N
595	chr6_apd_hap1	1367792	1367792	rs148280884	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	6p22.1	TRIM10	rs148280884-CAT	0.0122	2E-23		0.1655507	[0.13-0.2] unit decrease	Affymetrix [~ 2500000] (imputed)	N
595	chr6_apd_hap1	1367792	1367792	rs148280884	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	6p22.1	TRIM10	rs148280884-CAT	0.0122	6E-25		0.1707215	[0.14-0.2] unit decrease	Affymetrix [~ 2500000] (imputed)	N
595	chr6_apd_hap1	1368038	1368039	rs1573296	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	6p22.1	TRIM10	rs1573296-G	0.1349	2E-11		0.03526502	[0.025-0.046] unit decrease	Affymetrix [~ 2500000] (imputed)	N
595	chr6_apd_hap1	1368038	1368039	rs1573296	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	6p22.1	TRIM10	rs1573296-G	0.1349	1E-14		0.04046172	[0.03-0.051] unit decrease	Affymetrix [~ 2500000] (imputed)	N
595	chr6_apd_hap1	1368106	1368107	rs1318638	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	6p22.1	TRIM10	rs1318638-T	0.0648	3E-9		0.04268956	[0.029-0.057] unit increase	Affymetrix [~ 2500000] (imputed)	N
595	chr6_apd_hap1	1368106	1368107	rs1318638	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin concentration	172,851 European ancestry individuals	NA	6p22.1	TRIM10	rs1318638-T	0.0649	1E-20		0.06542649	[0.052-0.079] unit decrease	Affymetrix [~ 2500000] (imputed)	N
595	chr6_apd_hap1	1368336	1368337	rs142460927	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	6p22.1	TRIM10	rs142460927-C	0.00303299999999995	5E-25		0.21333578	[0.17-0.25] unit decrease	Affymetrix [93095623] (imputed)	N
595	chr6_apd_hap1	1368675	1368676	rs12212092	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	6p22.1	TRIM10	rs12212092-T	0.0644400000000001	6E-20		0.043098915	[0.034-0.052] unit decrease	Affymetrix [93095623] (imputed)	N
595	chr6_apd_hap1	1368675	1368676	rs12212092	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	6p22.1	TRIM10	rs12212092-T	0.06443	7E-84		0.096261576	[0.087-0.106] unit decrease	Affymetrix [93095623] (imputed)	N
595	chr6_apd_hap1	1368675	1368676	rs12212092	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	6p22.1	TRIM10	rs12212092-T	0.064469	1E-29		0.051481474	[0.043-0.06] unit decrease	Affymetrix [93095623] (imputed)	N
595	chr6_apd_hap1	1368675	1368676	rs12212092	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6p22.1	TRIM10	rs12212092-T	0.064468	1E-30		0.09085926	[0.075-0.106] unit decrease	Affymetrix [93095623] (imputed)	N
595	chr6_apd_hap1	1368675	1368676	rs12212092	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	6p22.1	TRIM10	rs12212092-T	0.0648	1E-24		0.07379727	[0.06-0.088] unit decrease	Affymetrix [~ 2500000] (imputed)	N
595	chr6_apd_hap1	1368675	1368676	rs12212092	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	6p22.1	TRIM10	rs12212092-T	0.0648	8E-24		0.07307307	[0.059-0.087] unit decrease	Affymetrix [~ 2500000] (imputed)	N
595	chr6_apd_hap1	1368675	1368676	rs12212092	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	6p22.1	TRIM10	rs12212092-T	0.0648	3E-24		0.07368067	[0.059-0.088] unit decrease	Affymetrix [~ 2500000] (imputed)	N
595	chr6_apd_hap1	1371341	1371342	rs17188113	29562276	Venkateswaran S	2018-03-01	Inflamm Bowel Dis	Enhanced Contribution of HLA in Pediatric Onset Ulcerative Colitis.	Childhood onset ulcerative colitis	466 European ancestry cases, 2,099 European ancestry controls	NA	6p22.1	HLA	rs17188113-?		9E-7		1.8086454	[1.57-2.05]	Affymetrix [3996700] (imputed)	N
595	chr6_apd_hap1	1371929	1371930	rs17194474	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	6p22.1	TRIM15	rs17194474-C	0.028724	4E-18		0.055055395	[0.043-0.067] unit decrease	Affymetrix [93095623] (imputed)	N
595	chr6_apd_hap1	1376195	1376196	rs9368624	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p22.1	TRIM15, TRIM10, TRIM40, TRIM31-AS1, TRIM31, TRIM26, PAIP1P1	rs9368624-A	0.1996982	3E-11	(EA, MHC class I polypeptide-related sequence A)	0.3704	[0.26-0.48] unit decrease	Affymetrix [509946]	N
595	chr6_apd_hap1	1377867	1377868	rs1018846	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	6p22.1	TRIM15	rs1018846-A	0.064503	4E-25		0.046360865	[0.038-0.055] unit increase	Affymetrix [93095623] (imputed)	N
595	chr6_apd_hap1	1378084	1378085	rs2107195	30037793	Haapasalo K	2018-09-21	Infect Immun	The Psoriasis Risk Allele <i>HLA-C*06:02</i> Shows Evidence of Association with Chronic or Recurrent Streptococcal Tonsillitis.	Tonsillitis	95 Finnish cases, 504 Finnish controls	NA	6p22.1	TRIM10, TRIM15	rs2107195-?		5E-6		3.7		Illumina [100000]	N
595	chr6_apd_hap1	1378380	1378381	rs1029239	34642315	Ferreiro-Iglesias A	2021-10-12	Nat Commun	Germline determinants of humoral immune response to HPV-16 protect against oropharyngeal cancer.	Human papilloma virus 16 positive oropharyngeal cancer	1,078 European ancestry cases, 5,256 European ancestry controls	NA	6p22.1		rs1029239-G	NR	3E-6		1.2904		Illumina [7574753] (imputed)	N
595	chr6_apd_hap1	1378863	1378864	rs1029238	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	6p22.1	TRIM15	rs1029238-A	0.089377	4E-11		0.025450304	[0.018-0.033] unit increase	Affymetrix [93095623] (imputed)	N
595	chr6_apd_hap1	1379917	1379918	rs929156	33909500	Moll M	2021-04-28	Am J Physiol Lung Cell Mol Physiol	A Systematic Analysis of Protein-altering Exonic Variants in Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease	up to 31,465 European ancestry cases, up to 203,688 European ancestry controls, up to 1,413 African ancestry cases, up to 6,080 African ancestry controls, up to 287 East Asian ancestry cases, up to 7,484 East Asian ancestry controls, up to 61 Hispanic cases, up to 613 Hispanic controls	NA	6p22.1	TRIM15	rs929156-G	0.76	8E-8		1.06	[1.04 -1.09]	Illumina [at least 109036]	N
595	chr6_apd_hap1	1393552	1393553	rs2106072	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p22.1	NR	rs2106072-A	0.13	3E-10		1.11	[1.08-1.15]	Affymetrix [9886854] (imputed)	N
595	chr6_apd_hap1	1393552	1393553	rs2106072	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p22.1	NR	rs2106072-A	0.13	9E-13			[NR]	Affymetrix [9886854] (imputed)	N
595	chr6_apd_hap1	1393552	1393553	rs2106072	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in non-current smokers	16,488 European ancestry cases, 169,688 European ancestry controls	NA	6p22.1	NR	rs2106072-A	0.13	3E-10		1.12	[1.08-1.15]	Affymetrix [9886854] (imputed)	N
595	chr6_apd_hap1	1395338	1395339	rs2517622	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Proheparin-binding EGF-like growth factor levels	21,758 European ancestry individuals	9,173 individuals	6p22.1		rs2517622-C	0.11	1E-9		0.0845	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
595	chr6_apd_hap1	1395338	1395339	rs2517622	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Help-seeking from a psychiatrist	36,286 British ancestry cases, 297,126 British ancestry controls	NA	6p22.1	NR	rs2517622-G	0.863	4E-11		1.0799136	NR	NR [5276842] (imputed)	N
595	chr6_apd_hap1	1395338	1395339	rs2517622	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Help-seeking from a GP (without major depressive disorder symptoms)	8,632 British ancestry cases, 49,493 British ancestry controls	NA	6p22.1	NR	rs2517622-?	NR	3E-6		1.1223345	[1.07-1.18]	NR [5276842] (imputed)	N
595	chr6_apd_hap1	1405472	1405473	rs2523722	22883433	Irish Schizophrenia Genomics Consortium and the Wellcome Trust Case Control Consortium 2	2012-08-07	Biol Psychiatry	Genome-wide association study implicates HLA-C*01:02 as a risk factor at the major histocompatibility complex locus in schizophrenia.	Schizophrenia	1,606 European ancestry cases, 1,794 European ancestry controls	13,195 European ancestry cases, 31,021 European ancestry controls	6p22.1	MHC, TRIM26	rs2523722-G	0.737	1E-16		1.25	[1.12-1.39]	Affymetrix [6212339]	N
595	chr6_apd_hap1	1407085	1407086	rs2523720	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p22.1		rs2523720-C	0.836	9E-50				Affymetrix [10369434] (imputed)	N
595	chr6_apd_hap1	1408034	1408035	rs2428503	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	TRIM26	rs2428503-T	NR	2E-9		0.0221273	[0.015-0.029] unit decrease	Affymetrix [127266] (imputed)	N
595	chr6_apd_hap1	1408518	1408519	rs2523719	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	6p22.1	TRIM26	rs2523719-G	0.830078	2E-21		0.0245541	[0.019-0.03] unit increase	Affymetrix [NR] (imputed)	N
595	chr6_apd_hap1	1409526	1409527	rs2517611	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (anti-inflammatory and antirheumatic products, non-steroids)	74,150 European ancestry cases, 90,370 European ancestry controls, 29,694 East Asian ancestry cases, 149,032 East Asian ancestry controls	NA	6p22.1		rs2517611-G	NR	2E-9		0.0422	[0.028-0.056] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
595	chr6_apd_hap1	1409526	1409527	rs2517611	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Asthma	38,369 European ancestry cases, 411,131 European ancestry controls, 13,015 East Asian ancestry cases, 162,933 East Asian ancestry controls	NA	6p22.1		rs2517611-G	NR	3E-11		0.0613	[0.043-0.079] unit increase	Affymetrix, Illumina [25837673] (imputed)	N
595	chr6_apd_hap1	1409526	1409527	rs2517611	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (anti-inflammatory and antirheumatic products, non-steroids)	74,150 European ancestry cases, 90,370 European ancestry controls	NA	6p22.1	TRIM26	rs2517611-G	0.229963	7E-10		0.050484303	[0.034-0.067] unit decrease	Affymetrix [7288503] (imputed)	N
595	chr6_apd_hap1	1410709	1410710	rs1117490	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (childhood onset)	9,433 British ancestry cases, 318,237 British ancestry controls	NA	6p22.1	TRIM26, TRIM15, TRIM39	rs1117490-C	0.234	3E-8		1.1	[1.063-1.137]	Affymetrix [10894596] (imputed)	N
595	chr6_apd_hap1	1410709	1410710	rs1117490	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (adult onset)	21,564 British ancestry cases, 318,237 British ancestry controls	NA	6p22.1	TRIM26, TRIM15, TRIM39	rs1117490-C	0.234	7E-7		1.059	[1.036-1.084]	Affymetrix [10894596] (imputed)	N
595	chr6_apd_hap1	1419615	1419616	rs2844775	24489884	Mick E	2014-01-01	PLoS One	Genome-wide association study of proneness to anger.	Anger	8,747 European ancestry individuals	NA	6p22.1	TRIM31, TRIM10, PPP1R11, TRIM40, TRIM15, HLA-A29.1, TRIM26, HCG9, ZNRD1, RNF39	rs2844775-A	0.25	8E-7	(Temperament)	0.15	[NR] unit decrease	Affymetrix [677643]	N
595	chr6_apd_hap1	1422076	1422077	rs2188100	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p22.1	NR	rs2188100-A	0.16	5E-11		1.15	[1.1-1.2]	Affymetrix [9886854] (imputed)	N
595	chr6_apd_hap1	1422076	1422077	rs2188100	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p22.1	NR	rs2188100-A	0.16	5E-14			[NR]	Affymetrix [9886854] (imputed)	N
595	chr6_apd_hap1	1422076	1422077	rs2188100	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in never smokers	8,631 European ancestry cases, 120,544 European ancestry controls	NA	6p22.1	NR	rs2188100-A	0.16	2E-11		1.15	[1.11-1.2]	Affymetrix [9886854] (imputed)	N
595	chr6_apd_hap1	1422588	1422589	rs1345229	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	6p22.1	TRIM26	rs1345229-A	0.085649	1E-9		0.023856346	[0.016-0.032] unit increase	Affymetrix [93095623] (imputed)	N
595	chr6_apd_hap1	1426874	1426875	rs9380159	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p22.1	NR	rs9380159-?	NR	8E-13		0.1064	[0.077-0.136] unit decrease	Illumina [at least 560000] (imputed)	N
595	chr6_apd_hap1	1430230	1430231	rs2517602	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	TRIM26	rs2517602-T	NR	1E-9		6.068	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
595	chr6_apd_hap1	1431321	1431321	rs72031595	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	6p22.1		rs72031595-CT	0.551943	5E-9		0.014966801	[0.01-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
595	chr6_apd_hap1	1440626	1440627	rs5875247	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	6p22.1	HCG17	rs5875247-C	0.465286	6E-14		0.017951211	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
595	chr6_apd_hap1	1441060	1441061	rs3094137	29784950	Sawai H	2018-05-21	Sci Rep	Genome-wide association study identified new susceptible genetic variants in HLA class I region for hepatitis B virus-related hepatocellular carcinoma.	Hepatocellular carcinoma in hepatitis B infection	473 Japanese ancestry chronic hepatitis and hepatocellular carcinoma cases, 516 Japanese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma	153 Japanese ancestry chronic hepatitis and hepatocellular carcinoma cases, 614 Japanese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma, 94 Chinese ancestry chronic hepatitis and hepatocellular carcinoma cases, 187 Chinese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma, 185 Thai ancestry chronic hepatitis and hepatocellular carcinoma cases, 198 Thai ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma	6p22.1	HLA	rs3094137-?	NR	4E-7	(Japanese)	1.76	[1.41-2.19]	Affymetrix [447830]	N
596	chr6_apd_hap1	1442758	1442759	rs885916	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	HCG17	rs885916-T	NR	1E-11		6.793	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
596	chr6_apd_hap1	1448116	1448117	rs3129693	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p22.1	HCG17, TRIM26BP	rs3129693-T	NR	2E-9		0.0239683	[0.016-0.032] unit increase	Affymetrix [323123] (imputed)	N
596	chr6_apd_hap1	1559336	1559339	rs141219707	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	6p22.1	HCG17, HLA-L	rs141219707-G	0.064428	9E-12		0.0670612	[0.059-0.075] unit increase	Affymetrix [93095623] (imputed)	N
596	chr6_apd_hap1	1559337	1559339	rs368679067	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hashimoto thyroiditis	537 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	6p22.1		rs368679067-G	0.221880434	3E-13		0.64336747	[0.47-0.82] unit increase	Illumina [13428945] (imputed)	N
596	chr6_apd_hap1	1568578	1568579	rs1264622	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	HCG17, HLA-L, HCG18	rs1264622-T	NR	2E-12		0.0273215	[0.02-0.035] unit decrease	Affymetrix [323858] (imputed)	N
596	chr6_apd_hap1	1568578	1568579	rs1264622	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	HCG17, HLA-L, HCG18	rs1264622-T	NR	2E-11		0.0260716	[0.018-0.034] unit decrease	Affymetrix [127266] (imputed)	N
596	chr6_apd_hap1	1568578	1568579	rs1264622	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6p22.1	HCG18	rs1264622-T	0.200945	1E-26		0.045548007	[0.037-0.054] unit decrease	Affymetrix [93095623] (imputed)	N
596	chr6_apd_hap1	1568578	1568579	rs1264622	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p22.1	HLA-L, HCG17, HCG18	rs1264622-T	0.1901	2E-7		0.0455	[0.028-0.063] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
596	chr6_apd_hap1	1568578	1568579	rs1264622	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	6p22.1	HCG18	rs1264622-T	0.2019	4E-13		0.03202955	[0.023-0.041] unit decrease	Affymetrix [~ 2500000] (imputed)	N
597	chr6_apd_hap1	1599909	1599910	rs9261655	33563987	Tyrrell J	2021-02-09	Nat Commun	Genetic predictors of participation in optional components of UK Biobank.	Percentage of invited food questionnaires completed	300,639 European ancestry individuals	NA	6p22.1	NR	rs9261655-G	0.89	4E-9		0.86	[0.57-1.15] unit increase	Affymetrix [39302896] (imputed)	N
597	chr6_apd_hap1	1602288	1602289	rs1264584	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	334,944 European ancestry, NR ancestry individuals	NA	6p22.1		rs1264584-?	NR	5E-8				Affymetrix [NR] (imputed)	N
597	chr6_apd_hap1	1607699	1607700	rs1110464	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	6p22.1	TRIM39-RPP21	rs1110464-T	0.5706	3E-9		0.015407745	[0.01-0.021] unit decrease	Affymetrix [~ 11515000] (imputed)	N
597	chr6_apd_hap1	1610876	1610877	rs3094067	25827949	Kunz M	2015-05-04	Exp Dermatol	Genome-wide association study identifies new susceptibility loci for cutaneous lupus erythematosus.	Cutaneous lupus erythematosus	151 European ancestry cases, 1,288 European ancestry controls	219 European ancestry cases, 262 European ancestry controls	6p22.1	TRIM39, RPP21	rs3094067-G	0.096	2E-11		2.32	[1.68-3.20]	Affymetrix [906600]	N
597	chr6_apd_hap1	1614234	1614235	rs3778624	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	6p22.1	NR	rs3778624-?		7E-7	(MICA)			Illumina [NR]	N
597	chr6_apd_hap1	1617587	1617588	rs9261659	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p22.1	NR	rs9261659-G	0.12	1E-10	(IFNAR2_of_CD20p)			Illumina [5084123] (imputed)	N
597	chr6_apd_hap1	1617587	1617588	rs9261659	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p22.1	NR	rs9261659-?	NR	3E-13		0.1554	[0.11-0.2] unit decrease	Illumina [at least 560000] (imputed)	N
597	chr6_apd_hap1	1624663	1624664	rs45626136	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p22.1	RPP21	rs45626136-C	0.939	1E-6		0.111	[0.066-0.156] unit increase	Affymetrix, Illumina [7374092] (imputed)	N
597	chr6_apd_hap1	1624974	1624975	rs6986	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Anxiety	at least 23,606 European ancestry cases, at least 113,351 European ancestry controls	624,615 European ancestry cases, 1,310,854 European ancestry controls	6p22.1	TRIM39, RPP21	rs6986-G	0.2545	1E-12		0.018671134	[0.013-0.025] unit decrease	NR [9417325] (imputed)	N
597	chr6_apd_hap1	1624974	1624975	rs6986	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	6p22.1	RPP21	rs6986-C	0.223335	7E-10		6.16	z score increase	NR [10847151] (imputed)	N
597	chr6_apd_hap1	1624974	1624975	rs6986	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling guilty	373,380 European ancestry individuals	NA	6p22.1	TRIM39-RPP21	rs6986-C	0.223335	4E-13		7.25	z score increase	NR [10847151] (imputed)	N
597	chr6_apd_hap1	1624974	1624975	rs6986	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	6p22.1	GNL1, HLA-E, PRR3, RPP21, TRIM10, TRIM15, TRIM26, TRIM31, TRIM39, TRIM39-RPP21, TRIM40	rs6986-C	0.22334	8E-9		5.76	z score increase	Illumina [18485882] (imputed)	N
597	chr6_apd_hap1	1624974	1624975	rs6986	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	6p22.1	NR	rs6986-C	0.2277	5E-6	(Trans-16:1n-7, EA)	0.0079	[0.0046-0.0112] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
597	chr6_apd_hap1	1632692	1632693	rs3132649	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	6p22.1	TRIM39-RPP21, HLA-E	rs3132649-G	NR	4E-7		0.152484	[0.093-0.211] unit increase	Illumina [at least 950000] (imputed)	N
597	chr6_apd_hap1	1635612	1635612	rs9280949	31577861	Dai J	2019-10-31	Int J Cancer	Genome-wide association study of INDELs identified four novel susceptibility loci associated with lung cancer risk.	Lung cancer	20,871 European ancestry cases, 15,971 European ancestry controls, 2,331 Chinese ancestry cases, 3,077 Chinese ancestry controls	NA	6p22.1	RPP21	rs9280949-T	0.09	3E-10		1.16	[1.11-1.22]	Illumina [484196]	N
597	chr6_apd_hap1	1637166	1637167	rs3130379	31272903	Sunadome H	2019-07-01	Allergol Int	Correlation between eosinophil count, its genetic background and body mass index: The Nagahama Study.	Eosinophil counts	4,650 East Asian ancestry individuals	NA	6p22.1	NR	rs3130379-T	0.11	2E-7		0.1677	NR unit increase	Illumina [103680] (imputed)	N
597	chr6_apd_hap1	1637166	1637167	rs3130379	31272903	Sunadome H	2019-07-01	Allergol Int	Correlation between eosinophil count, its genetic background and body mass index: The Nagahama Study.	Eosinophil counts	4,206 East Asian ancestry individuals	NA	6p22.1	NR	rs3130379-T	0.11	4E-10		0.2134	NR unit increase	Illumina [103680] (imputed)	N
597	chr6_apd_hap1	1638158	1638158	rs34500224	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	6p22.1	UBQLN1P1, HCG19P	rs34500224-CA	0.272902	2E-20		0.026657145	[0.021-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
597	chr6_apd_hap1	1638163	1638163	rs202005918	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	95,717 East Asian ancestry individuals	NA	6p22.1		rs202005918-CA	0.233019	1E-8		0.0295853	[0.019-0.04] unit increase	Illumina [13471431] (imputed)	N
597	chr6_apd_hap1	1639587	1639588	rs3094622	29899525	Klimentidis YC	2018-06-13	Int J Obes (Lond)	Genome-wide association study of habitual physical activity in over 377,000 UK Biobank participants identifies multiple variants including CADM2 and APOE.	Moderate to vigorous physical activity levels	377,234 European ancestry individuals	NA	6p22.1	RPP21	rs3094622-A	0.86	1E-9		0.02	unit increase	Affymetrix [11800000] (imputed)	N
597	chr6_apd_hap1	1640828	1640829	rs116470386	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p22.1	NR	rs116470386-?	NR	5E-7		0.2768	[0.17-0.39] unit decrease	Illumina [at least 560000] (imputed)	N
597	chr6_apd_hap1	1645138	1645139	rs3094054	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p22.1	NR	rs3094054-T	0.1132	1E-7	(EA)	0.056	[0.035-0.077] unit decrease	Illumina [~ 11800000] (imputed)	N
597	chr6_apd_hap1	1646982	1646983	rs2057726	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	6p22.1		rs2057726-C	0.143	2E-91		0.31	[0.28-0.34] % increase	Affymetrix [NR] (imputed)	N
597	chr6_apd_hap1	1651571	1651571	rs139568388	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	UBQLN1P1	rs139568388-CT	NR	2E-8		0.0220953	[0.014-0.03] unit decrease	Affymetrix [323858] (imputed)	N
597	chr6_apd_hap1	1651571	1651571	rs139568388	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	UBQLN1P1	rs139568388-CT	NR	3E-8		0.0218212	[0.014-0.03] unit decrease	Affymetrix [127266] (imputed)	N
597	chr6_apd_hap1	1654385	1654386	rs3129817	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p22.1	UBQLN1P1	rs3129817-A	NR	1E-9		0.0241213	[0.016-0.032] unit decrease	Affymetrix [319769] (imputed)	N
597	chr6_apd_hap1	1654385	1654386	rs3129817	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p22.1	UBQLN1P1	rs3129817-A	NR	1E-8		0.0225242	[0.015-0.03] unit decrease	Affymetrix [319769] (imputed)	N
597	chr6_apd_hap1	1654385	1654386	rs3129817	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p22.1	UBQLN1P1	rs3129817-A	NR	5E-8		0.0218736	[0.014-0.03] unit decrease	Affymetrix [321169] (imputed)	N
597	chr6_apd_hap1	1654385	1654386	rs3129817	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Anxiety	at least 23,606 European ancestry cases, at least 113,351 European ancestry controls	624,615 European ancestry cases, 1,310,854 European ancestry controls	6p22.1	UBQLN1P1	rs3129817-G	0.1083	2E-48		0.052231386	[0.044-0.06] unit increase	NR [9417325] (imputed)	N
597	chr6_apd_hap1	1654385	1654386	rs3129817	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	UBQLN1P1	rs3129817-A	NR	1E-8		5.695	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
597	chr6_apd_hap1	1658938	1658939	rs970270	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Prostate cancer	10,792 European ancestry cases, 410,350 European ancestry controls	NA	6p22.1		rs970270-A	NR	3E-7		1.0985389	NR	Affymetrix [7846216] (imputed)	N
597	chr6_apd_hap1	1659352	1659353	rs3132625	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Peripheral artery disease	7,114 European ancestry cases, 475,964 European ancestry controls, 4,112 East Asian ancestry cases, 173,601 East Asian ancestry controls	NA	6p22.1		rs3132625-G	NR	2E-8		0.165	[0.11-0.22] unit increase	Affymetrix, Illumina [25844651] (imputed)	N
597	chr6_apd_hap1	1671331	1671332	rs2524204	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	6p22.1	intergenic	rs2524204-C	0.1322	6E-15		0.04113655	[0.031-0.051] unit decrease	Affymetrix [~ 2500000] (imputed)	N
597	chr6_apd_hap1	1671331	1671332	rs2524204	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	6p22.1	intergenic	rs2524204-C	0.1322	7E-14		0.03948169	[0.029-0.05] unit decrease	Affymetrix [~ 2500000] (imputed)	N
597	chr6_apd_hap1	1672992	1672993	rs9391683	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p22.1		rs9391683-G	0.689	2E-33				Affymetrix [10369434] (imputed)	N
597	chr6_apd_hap1	1673057	1673058	rs2516686	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	6p22.1	intergenic	rs2516686-G	0.1322	1E-13		0.03934043	[0.029-0.05] unit decrease	Affymetrix [~ 2500000] (imputed)	N
597	chr6_apd_hap1	1673057	1673058	rs2516686	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	6p22.1	intergenic	rs2516686-G	0.1322	6E-12		0.03638258	[0.026-0.047] unit decrease	Affymetrix [~ 2500000] (imputed)	N
597	chr6_apd_hap1	1673441	1673442	rs9391684	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p22.1		rs9391684-G	0.688	7E-19				Affymetrix [10369434] (imputed)	N
597	chr6_apd_hap1	1677082	1677083	rs3130116	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p22.1	NR	rs3130116-C	0.1391	6E-13		0.0124	[0.0091-0.0157] unit decrease	NR [7666894] (imputed)	N
597	chr6_apd_hap1	1678645	1678646	rs1264565	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	6p22.1		rs1264565-T	0.618	8E-15		0.01	[0.008-0.012] unit increase	NR [NR] (imputed)	N
597	chr6_apd_hap1	1685519	1685520	rs28780100	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p22.1	NR	rs28780100-?	NR	3E-9		0.1143	[0.077-0.152] unit increase	Illumina [at least 560000] (imputed)	N
597	chr6_apd_hap1	1687518	1687519	rs34874107	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	6p22.1		rs34874107-C	0.182865	4E-10		0.019685585	[0.014-0.026] unit increase	Affymetrix [93095623] (imputed)	N
597	chr6_apd_hap1	1692000	1692001	rs78860372	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lung cancer	4,444 East Asian ancestry cases, 174,282 East Asian ancestry controls	NA	6p22.1		rs78860372-T	0.236112602	5E-9		0.14972878	[0.099-0.2] unit increase	Illumina [13429980] (imputed)	N
597	chr6_apd_hap1	1693802	1693803	rs1264544	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	334,944 European ancestry, NR ancestry individuals	NA	6p22.1		rs1264544-?	NR	5E-8				Affymetrix [NR] (imputed)	N
597	chr6_apd_hap1	1693802	1693803	rs1264544	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	6p22.1		rs1264544-C	0.667	1E-12				Affymetrix [10369434] (imputed)	N
597	chr6_apd_hap1	1697380	1697381	rs3094717	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p22.1	NR	rs3094717-?	NR	6E-7		0.0733	[0.044-0.102] unit decrease	Illumina [at least 560000] (imputed)	N
597	chr6_apd_hap1	1698876	1698877	rs139215104	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mumps	31,227 European ancestry cases, 54,153 European ancestry controls	NA	6p22.1	NR	rs139215104-?	NR	6E-11		0.5908	[0.41-0.77] unit increase	Illumina [at least 560000] (imputed)	N
597	chr6_apd_hap1	1701814	1701815	rs9261899	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	6p22.1	NR	rs9261899-?	NR	9E-33		11.926	NR z score increase	Illumina [at least 830937] (imputed)	N
597	chr6_apd_hap1	1703225	1703226	rs76241157	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lung cancer	3,791 European ancestry cases, 489,012 European ancestry controls, 4,444 East Asian ancestry cases, 174,282 East Asian ancestry controls	NA	6p22.1		rs76241157-T	NR	1E-8		0.1454	[0.095-0.196] unit increase	Affymetrix, Illumina [25845450] (imputed)	N
597	chr6_apd_hap1	1703609	1703610	rs3130127	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	MICC	rs3130127-A	NR	8E-10		6.154	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
598	chr6_apd_hap1	1710024	1710025	rs114810763	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6p22.1		rs114810763-A	0.1549	2E-9		0.0121	[0.0082-0.016] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
598	chr6_apd_hap1	1710024	1710025	rs114810763	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6p22.1	Intergenic	rs114810763-A	0.1549	6E-12	(MTAG)	0.0129	[0.0092-0.0166] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
598	chr6_apd_hap1	1712397	1712398	rs149543464	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms (MTAG)	354,862 European ancestry individuals	NA	6p22.1	NR	rs149543464-G	0.8838	1E-10		0.0217	[0.015-0.028] unit increase	Illumina [NR] (imputed)	N
598	chr6_apd_hap1	1712397	1712398	rs149543464	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms	354,862 European ancestry individuals	NA	6p22.1	NR	rs149543464-G	0.8838	8E-9		0.0213	[0.014-0.029] unit increase	Illumina [NR] (imputed)	N
598	chr6_apd_hap1	1720421	1720422	rs1269556	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	6p22.1	NR	rs1269556-?	NR	2E-6		0.0083093	[0.0049-0.0117] unit decrease	Affymetrix [805426] (imputed)	N
598	chr6_apd_hap1	1720883	1720884	rs3132645	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p22.1	RNF39, TRIM31, FLOT1, PPP1R18, HLA-J, ZNRD1-AS1_3, ZNRD1, TRIM26, HCG17, TRIM26BP, HLA-L, TRIM39-RPP21, RPP21, HCG19P, ATAT1, NRM, IER3, HCG20, LINC00243, ZNRD1-AS1, HCG4P3, PPP1R11, TRIM31-AS1, TRIM40, TRIM10, TRIM15, PAIP1P1, XXbac-BPG283O16.9, HCG18, TRIM39, HLA-N, UBQLN1P1, MICC, SUCLA2P1, GNL1, ABCF1, PPP1R10, PTMAP1, MRPS18B, C6orf136, AL662800.2, DHX16, AL662797.1, XXbac-BPG252P9.9, TUBB, MDC1, Y_RNA, XXbac-BPG252P9.10, RN7SL353P	rs3132645-C	0.09428285	4E-22	(EA, MHC class I polypeptide-related sequence B)	0.7147	[0.57-0.86] unit decrease	Affymetrix [509946]	N
598	chr6_apd_hap1	1723537	1723538	rs1264516	33106546	Johnson TA	2020-10-26	J Hum Genet	Association of an IGHV3-66 gene variant with Kawasaki disease.	Kawasaki disease	1,276 East Asian ancestry cases, 5,086 East Asian ancestry controls	2,152 East Asian ancestry cases, 2,751 East Asian ancestry controls	6p22.1	LOC105375012	rs1264516-A	NR	4E-11		1.24	[1.16-1.32]	Affymetrix, Illumina [6265045] (imputed)	N
598	chr6_apd_hap1	1791565	1791566	rs140668832	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs140668832-?		2E-9		1.07	[1.05-1.09]	Illumina [7645193] (imputed)	N
598	chr6_apd_hap1	1791565	1791566	rs140668832	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs140668832-?		3E-10		1.92	[1.57-2.35]	Illumina [7645193] (imputed)	N
598	chr6_apd_hap1	1794124	1794125	rs28894081	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p21.33	NR	rs28894081-A	0.0655	1E-7		0.0126	[0.0079-0.0173] unit increase	NR [7666894] (imputed)	N
598	chr6_apd_hap1	1795136	1795137	rs181383036	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p21.33	NR	rs181383036-?	NR	2E-12		0.3665	[0.27-0.47] unit increase	Illumina [at least 560000] (imputed)	N
598	chr6_apd_hap1	1795678	1795679	rs10484552	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p21.33	NR	rs10484552-?	NR	8E-10		0.0986	[0.067-0.13] unit decrease	Illumina [at least 560000] (imputed)	N
598	chr6_apd_hap1	1798949	1798950	rs143654430	30111768	Yao C	2018-08-15	Nat Commun	Genome-wide mapping of plasma protein QTLs identifies putatively causal genes and pathways for cardiovascular disease.	Blood protein levels	6861 European ancestry individuals	4298 European ancestry individuals	6p21.33		rs143654430-T	0.981	7E-18	(C2)	0.639	unit increase	Affymetrix, Illumina [8509364] (imputed)	N
598	chr6_apd_hap1	1804678	1804679	rs139629463	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mumps	31,227 European ancestry cases, 54,153 European ancestry controls	NA	6p21.33	NR	rs139629463-?	NR	4E-6		0.3	[0.17-0.43] unit increase	Illumina [at least 560000] (imputed)	N
598	chr6_apd_hap1	1806109	1806110	rs149608588	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p21.33	NR	rs149608588-?	NR	1E-6		0.2523	[0.15-0.36] unit decrease	Illumina [at least 560000] (imputed)	N
598	chr6_apd_hap1	1807325	1807326	rs41265607	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.33		rs41265607-C	0.801	3E-28				Affymetrix [10369434] (imputed)	N
598	chr6_apd_hap1	1807325	1807326	rs41265607	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs41265607-C	0.801	4E-34				Affymetrix [10369434] (imputed)	N
598	chr6_apd_hap1	1807382	1807383	rs147537141	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	6p21.33		rs147537141-G	0.014219	2E-16		0.08431184	[0.064-0.104] unit increase	Affymetrix [93095623] (imputed)	N
598	chr6_apd_hap1	1820598	1820599	rs3130117	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p21.33	NR	rs3130117-?	NR	2E-7		0.0742	[0.046-0.102] unit increase	Illumina [at least 560000] (imputed)	N
598	chr6_apd_hap1	1822812	1822813	rs2524222	27479909	Hyde CL	2016-08-01	Nat Genet	Identification of 15 genetic loci associated with risk of major depression in individuals of European descent.	Major depressive disorder	84,847 European ancestry cases, 241,266 European ancestry controls	45,773 European ancestry cases, 106,354 European ancestry controls	6p21.33	GNL1	rs2524222-T	0.219809	1E-6		0.0335	[0.02-0.047] unit increase	Illumina [1220000] (imputed)	N
599	chr6_apd_hap1	1938860	1938861	rs1076829	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	DHX16	rs1076829-C	NR	4E-8		0.0176091	[0.011-0.024] unit decrease	Affymetrix [127266] (imputed)	N
599	chr6_apd_hap1	1939896	1939897	rs1076828	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	DHX16	rs1076828-A	NR	2E-8		0.0180204	[0.012-0.024] unit decrease	Affymetrix [323858] (imputed)	N
599	chr6_apd_hap1	1940601	1940602	rs74917683	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p21.33	NR	rs74917683-?	NR	2E-11		0.1491	[0.1-0.19] unit increase	Illumina [at least 560000] (imputed)	N
599	chr6_apd_hap1	1945236	1945237	rs55740398	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	6p21.33		rs55740398-A	0.0027098	6E-6		0.29793	[0.17-0.43] unit increase	Affymetrix [15580782] (imputed)	N
599	chr6_apd_hap1	1945519	1945520	rs3094097	31272903	Sunadome H	2019-07-01	Allergol Int	Correlation between eosinophil count, its genetic background and body mass index: The Nagahama Study.	Eosinophil counts	4,206 East Asian ancestry individuals	NA	6p21.33	NR	rs3094097-G	0.22	2E-9		0.1545	NR unit increase	Illumina [103680] (imputed)	N
599	chr6_apd_hap1	1961671	1961672	rs9262142	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p21.33	NR	rs9262142-A	0.1166	3E-6	(EA)	0.0489	[0.028-0.069] unit decrease	Illumina [~ 11800000] (imputed)	N
599	chr6_apd_hap1	1961963	1961964	rs2394392	31272903	Sunadome H	2019-07-01	Allergol Int	Correlation between eosinophil count, its genetic background and body mass index: The Nagahama Study.	Eosinophil counts	4,650 East Asian ancestry individuals	NA	6p21.33	NR	rs2394392-G	0.18	2E-8		0.1481	NR unit increase	Illumina [103680] (imputed)	N
599	chr6_apd_hap1	1964426	1964427	rs9262143	33909500	Moll M	2021-04-28	Am J Physiol Lung Cell Mol Physiol	A Systematic Analysis of Protein-altering Exonic Variants in Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease	up to 31,465 European ancestry cases, up to 203,688 European ancestry controls, up to 1,413 African ancestry cases, up to 6,080 African ancestry controls, up to 287 East Asian ancestry cases, up to 7,484 East Asian ancestry controls, up to 61 Hispanic cases, up to 613 Hispanic controls	NA	6p21.33	PPP1R18	rs9262143-T	0.14	1E-13		1.11	[1.08 -1.15]	Illumina [at least 109036]	N
599	chr6_apd_hap1	1964426	1964427	rs9262143	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p21.33	PPP1R18	rs9262143-T		3E-28		0.036	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
599	chr6_apd_hap1	1964427	1964428	rs138394556	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	6p21.33	NRM	rs138394556-A	0.1475	2E-8		0.018794373	[0.012-0.025] unit decrease	Affymetrix [11515109] (imputed)	N
600	chr6_apd_hap1	1968492	1968493	rs2269705	27151647	Chen G	2016-05-05	Addict Biol	An association study revealed substantial effects of dominance, epistasis and substance dependence co-morbidity on alcohol dependence symptom count.	Alcohol dependence symptom count	2,605 European ancestry individuals, 1,233 African American individuals	NA	6p21.33	NRM	rs2269705-?		3E-10	(additive)	0.266	[0.18-0.35] unit decrease	Illumina [974863]	N
600	chr6_apd_hap1	1968660	1968661	rs3094092	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	6p21.33	NRM	rs3094092-T	NR	2E-8		0.036598	[0.024-0.049] unit increase	Illumina [13520550] (imputed)	N
600	chr6_apd_hap1	1974709	1974710	rs137934746	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p21.33	NR	rs137934746-?	NR	1E-6		0.2471	[0.15-0.35] unit decrease	Illumina [at least 560000] (imputed)	N
600	chr6_apd_hap1	1976094	1976095	rs370462350	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	6p21.33	NRM	rs370462350-?	NR	2E-9		0.375	[0.25-0.5] unit decrease	Illumina [34656550] (imputed)	N
600	chr6_apd_hap1	1977168	1977169	rs149856401	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Stable angina pectoris	17,894 European ancestry cases, 325,132 European ancestry controls, 18,833 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	6p21.33		rs149856401-G	NR	1E-13		0.1724	[0.13-0.22] unit increase	Affymetrix, Illumina [20456336] (imputed)	N
600	chr6_apd_hap1	1978089	1978091	rs147637345	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p21.33	NR	rs147637345-?	NR	1E-7		0.0819	[0.052-0.112] unit increase	Illumina [at least 560000] (imputed)	N
600	chr6_apd_hap1	1978089	1978091	rs147637345	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	6p21.33	NR	rs147637345-?	NR	4E-6		0.0842	[0.048-0.12] unit decrease	Illumina [at least 560000] (imputed)	N
600	chr6_apd_hap1	1978312	1978313	rs9468811	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs9468811-C	0.937946818961625	6E-7	(IGP19)	0.3471	[0.21-0.48] unit decrease	Illumina [~ 2500000] (imputed)	N
600	chr6_apd_hap1	1978312	1978313	rs9468811	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs9468811-C	0.937725588025022	3E-6	(IGP74)	0.3262	[0.19-0.46] unit decrease	Illumina [~ 2500000] (imputed)	N
600	chr6_apd_hap1	1978312	1978313	rs9468811	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs9468811-C	0.937641317877842	2E-6	(IGP75)	0.3304	[0.19-0.47] unit decrease	Illumina [~ 2500000] (imputed)	N
600	chr6_apd_hap1	1978312	1978313	rs9468811	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs9468811-C	0.937418950958538	3E-6	(IGP69)	0.3228	[0.19-0.46] unit decrease	Illumina [~ 2500000] (imputed)	N
600	chr6_apd_hap1	1978312	1978313	rs9468811	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs9468811-C	0.937308425901202	5E-7	(IGP76)	0.3469	[0.21-0.48] unit increase	Illumina [~ 2500000] (imputed)	N
600	chr6_apd_hap1	1980912	1980913	rs115448006	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.33	NR	rs115448006-T	0.01	5E-11		0.599756	[0.42-0.78] unit increase	Affymetrix [up to 8900000] (imputed)	N
600	chr6_apd_hap1	1991270	1991271	rs3094093	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs3094093-T	0.107712365538735	8E-6	(IGP65)	0.2214	[0.12-0.32] unit decrease	Illumina [~ 2500000] (imputed)	N
600	chr6_apd_hap1	1991270	1991271	rs3094093	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs3094093-T	0.107418420152946	8E-6	(IGP2)	0.2231	[0.13-0.32] unit increase	Illumina [~ 2500000] (imputed)	N
600	chr6_apd_hap1	1991270	1991271	rs3094093	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs3094093-T	0.107325880449438	3E-6	(IGP42)	0.2336	[0.14-0.33] unit increase	Illumina [~ 2500000] (imputed)	N
600	chr6_apd_hap1	1997062	1997063	rs4713354	31272903	Sunadome H	2019-07-01	Allergol Int	Correlation between eosinophil count, its genetic background and body mass index: The Nagahama Study.	Eosinophil counts	4,650 East Asian ancestry individuals	NA	6p21.33	MDC1	rs4713354-C	0.216	2E-8		0.14	NR unit increase	Illumina [103680] (imputed)	N
600	chr6_apd_hap1	1999113	1999114	rs117670375	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Gynecologic disease (multivariate analysis)	up to 7,975 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs117670375-?		1E-8	(uterine cervical cancer)			Illumina [7645193] (imputed)	N
600	chr6_apd_hap1	1999113	1999114	rs117670375	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Gynecologic disease	7,975 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs117670375-?		1E-7		1.16	[1.10-1.22]	Illumina [7645193] (imputed)	N
600	chr6_apd_hap1	1999113	1999114	rs117670375	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Gynecologic disease	7,315 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs117670375-?		2E-10				Illumina [7645193] (imputed)	N
600	chr6_apd_hap1	1999113	1999114	rs117670375	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs117670375-?		2E-9		1.07	[1.05-1.09]	Illumina [7645193] (imputed)	N
600	chr6_apd_hap1	1999113	1999114	rs117670375	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs117670375-?		3E-10		1.92	[1.57-2.35]	Illumina [7645193] (imputed)	N
600	chr6_apd_hap1	2000068	2000069	rs3132584	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	TUBB	rs3132584-T	NR	1E-8		0.021321	[0.014-0.029] unit decrease	Affymetrix [323858] (imputed)	N
600	chr6_apd_hap1	2000068	2000069	rs3132584	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	TUBB	rs3132584-T	NR	3E-8		0.0206734	[0.013-0.028] unit decrease	Affymetrix [127266] (imputed)	N
600	chr6_apd_hap1	2000068	2000069	rs3132584	32989287	Cuellar-Partida G	2020-09-28	Nat Hum Behav	Genome-wide association study identifies 48 common genetic variants associated with handedness.	Left-handedness	1,766,671 European ancestry individuals	NA	6p21.33	TUBB	rs3132584-T	0.2056	6E-25		0.95483845	[NR]	Illumina [12493444] (imputed)	N
600	chr6_apd_hap1	2004762	2004763	rs7781	33723403	Sha Z	2021-03-15	Nat Hum Behav	The genetic architecture of structural left-right asymmetry of the human brain.	Left-right brain asymmetry	32,256 European ancestry individuals	NA	6p21.33	TUBB	rs7781-G	0.24	2E-10				NR [9312144] (imputed)	N
600	chr6_apd_hap1	2006015	2006016	rs3094128	31504236	Wiberg A	2019-09-05	Brain	Handedness, language areas and neuropsychiatric diseases: insights from brain imaging and genetics.	Handedness (non-right-handed vs right-handed)	44,631 European ancestry non-right-handed individuals, 356,567 European ancestry right-handed individuals	NA	6p21.33	TUBB, MICB, FLOT1	rs3094128-?	0.789	3E-8		1.0526316	[1.03-1.06]	NR [~ 11000000] (imputed)	N
600	chr6_apd_hap1	2009088	2009089	rs3094127	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p21.33	FLOT1	rs3094127-A	NR	2E-8		5.644	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
602	chr6_apd_hap1	2257266	2257267	rs34853064	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.33	NR	rs34853064-?	NR	6E-9				Affymetrix [~ 8270000] (imputed)	N
602	chr6_apd_hap1	2259150	2259151	rs3094084	25827949	Kunz M	2015-05-04	Exp Dermatol	Genome-wide association study identifies new susceptibility loci for cutaneous lupus erythematosus.	Cutaneous lupus erythematosus	151 European ancestry cases, 1,288 European ancestry controls	219 European ancestry cases, 262 European ancestry controls	6p21.33	MUC21, TRIM39, RPP21	rs3094084-T	0.154	2E-11		2.3	[1.76-3.01]	Affymetrix [906600]	N
602	chr6_apd_hap1	2261688	2261689	rs2844678	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	683 Turkish ancestry cases, 1,721 Turkish ancestry controls	NA	6p21.33	MUC21	rs2844678-?	NR	2E-42				Illumina [4495750] (imputed)	N
602	chr6_apd_hap1	2261688	2261689	rs2844678	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	286 European ancestry cases, 2,652 European ancestry controls, 76 Han Chinese ancestry cases, 889 Han Chinese ancestry controls, 46 South Asian ancestry cases, 501 South Asian ancestry controls, 683 Turkish ancestry cases, 1,721 Turkish ancestry controls	NA	6p21.33	MUC21	rs2844678-?	NR	6E-47		2.71	NR	Illumina [up to 4495750] (imputed)	N
602	chr6_apd_hap1	2266760	2266761	rs9262397	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Unilateral cleft lip and palate	205 Asian ancestry cases, 315 European ancestry cases, 692 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	6p21.33	NR	rs9262397-?	NR	1E-6		1.75	[1.6-1.91]	Illumina [539000] (imputed)	N
602	chr6_apd_hap1	2270634	2270635	rs13211972	32276964	Shete S	2020-04-10	Cancer Res	A genome-wide association study identifies two novel susceptible regions for squamous cell carcinoma of the head and neck.	Oropharynx cancer	1,144 European ancestry cases, 4,493 European ancestry controls	2,328 European ancestry cases, 3,232 European ancestry controls	6p21.33	MUC21	rs13211972-A	0.05	1E-10		1.55	[1.36-1.77]	Illumina [7858089] (imputed)	N
602	chr6_apd_hap1	2272578	2272579	rs150184132	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs150184132-C	0.961	1E-9				Affymetrix [10369434] (imputed)	N
602	chr6_apd_hap1	2280640	2280641	rs1632862	26379185	Garcia-Etxebarria K	2015-09-17	PLoS One	No Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity.	Severe influenza A (H1N1) infection	49 European ancestry severe cases, 549 European ancestry population controls	NA	6p21.33	MUC21, MUC22	rs1632862-?	0.009311	2E-14		15.2	[6.123-37.73]	Affymetrix [547296]	N
602	chr6_apd_hap1	2280822	2280823	rs9262437	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	683 Turkish ancestry cases, 1,721 Turkish ancestry controls	NA	6p21.33	MUC22	rs9262437-?	NR	5E-31	(conditional on rs2844678)			Illumina [4495750] (imputed)	N
602	chr6_apd_hap1	2281575	2281576	rs6920820	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p21.33		rs6920820-?	NR	2E-9		0.0557301	[0.037-0.074] unit increase	Affymetrix [20259828] (imputed)	N
602	chr6_apd_hap1	2284502	2284503	rs1634718	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	MUC22, MUC21	rs1634718-G	0.2540161	7E-11	(EA, Complement C4)	0.3291	[0.23-0.43] unit decrease	Affymetrix [509946]	N
602	chr6_apd_hap1	2284802	2284803	rs1634719	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs1634719-A	0.697	1E-33				Affymetrix [10369434] (imputed)	N
602	chr6_apd_hap1	2287856	2287857	rs28360974	23551011	Zhao L	2013-04-02	Ann Hum Genet	Genome-wide association study of pre-eclampsia detects novel maternal single nucleotide polymorphisms and copy-number variants in subsets of the Hyperglycemia and Adverse Pregnancy Outcome (HAPO) study cohort.	Preeclampsia	21 Afro-Caribbean cases, 1,010 Afro-Caribbean controls, 50 European ancestry cases, 1,202 European ancestry controls, 62 Hispanic cases, 658 Hispanic controls	NA	6p21.33	MUC21	rs28360974-?	NR	3E-6	(Afro-Caribbean)	10.13	[3.85-26.67]	Illumina [2485249] (imputed)	N
602	chr6_apd_hap1	2287987	2287988	rs149405105	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MUC22	rs149405105-A	NR	2E-8		0.0337227	[0.022-0.045] unit increase	Affymetrix [319769] (imputed)	N
602	chr6_apd_hap1	2287987	2287988	rs149405105	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	MUC22	rs149405105-A	NR	1E-8		0.0343316	[0.023-0.046] unit increase	Affymetrix [319769] (imputed)	N
602	chr6_apd_hap1	2287987	2287988	rs149405105	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.33	MUC22	rs149405105-A	NR	3E-10		0.0380088	[0.026-0.05] unit increase	Affymetrix [321114] (imputed)	N
602	chr6_apd_hap1	2287987	2287988	rs149405105	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	MUC22	rs149405105-A	NR	2E-9		0.0364062	[0.025-0.048] unit increase	Affymetrix [321169] (imputed)	N
602	chr6_apd_hap1	2293726	2293728	rs71757905	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Chickenpox	107,769 European ancestry cases, 15,982 European ancestry controls	NA	6p21.33	NR	rs71757905-?	NR	9E-6		0.1098	[0.062-0.158] unit increase	Illumina [at least 560000] (imputed)	N
602	chr6_apd_hap1	2294445	2294446	rs9394026	29031612	Hirata J	2017-10-12	J Invest Dermatol	Variants at HLA-A, HLA-C, and HLA-DQB1 Confer Risk of Psoriasis Vulgaris in Japanese.	Psoriasis vulgaris	282 Japanese ancestry cases, 426 Japanese ancestry controls	320 Japanese ancestry cases, 1,622 Japanese ancestry controls	6p21.33	HLA	rs9394026-G	0.197	7E-15		1.86	[1.59-2.18]	Illumina [6369185] (imputed)	N
602	chr6_apd_hap1	2296369	2296370	rs3869097	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.33		rs3869097-T	0.32183300000000004	2E-7		1.0237832	[1.01-1.03]	Affymetrix, Illumina [9851866] (imputed)	N
602	chr6_apd_hap1	2297729	2297730	rs1634726	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental longevity (mother's age at death)	52,776 middle-aged British individuals	NA	6p21.33	NR	rs1634726-?	NR	6E-6		0.032105	[0.018-0.046] unit increase	Affymetrix [9658292] (imputed)	N
602	chr6_apd_hap1	2299894	2299895	rs1632870	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MUC22	rs1632870-T	NR	5E-8		0.0227309	[0.015-0.031] unit increase	Affymetrix [323123] (imputed)	N
602	chr6_apd_hap1	2300937	2300938	rs139141104	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 142,336 Japanese ancestry controls	NA	6p21.33	MUC22	rs139141104-?	NR	1E-18		0.16637	[0.13-0.2] unit increase	Illumina [19707525] (imputed)	N
602	chr6_apd_hap1	2301608	2301609	rs114115115	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.33		rs114115115-T	0.937	4E-16				Affymetrix [10369434] (imputed)	N
602	chr6_apd_hap1	2301608	2301609	rs114115115	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cervical cancer	6,563 European ancestry cases, 410,350 European ancestry controls	NA	6p21.33		rs114115115-T	NR	6E-13		1.3463	NR	Affymetrix [7846216] (imputed)	N
602	chr6_apd_hap1	2301935	2301936	rs9380210	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.33		rs9380210-A	0.72	1E-24				Affymetrix [10369434] (imputed)	N
602	chr6_apd_hap1	2301935	2301936	rs9380210	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.33		rs9380210-A	0.72	7E-16				Affymetrix [10369434] (imputed)	N
602	chr6_apd_hap1	2301935	2301936	rs9380210	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p21.33		rs9380210-A	0.72	5E-18				Affymetrix [10369434] (imputed)	N
602	chr6_apd_hap1	2301971	2301972	rs1634729	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	118,886 East Asian ancestry individuals	NA	6p21.33		rs1634729-C	0.950931	3E-9		0.0534033	[0.036-0.071] unit decrease	Illumina [13474352] (imputed)	N
602	chr6_apd_hap1	2301971	2301972	rs1634729	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MUC22	rs1634729-T	NR	3E-9		0.0248876	[0.017-0.033] unit decrease	Affymetrix [319769] (imputed)	N
602	chr6_apd_hap1	2301971	2301972	rs1634729	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	MUC22	rs1634729-T	NR	6E-9		0.0242344	[0.016-0.032] unit decrease	Affymetrix [319769] (imputed)	N
602	chr6_apd_hap1	2301997	2301998	rs116071718	31066027	Nicoletti P	2019-05-07	Clin Pharmacol Ther	Shared genetic risk factors across carbamazepine-induced hypersensitivity reactions.	Carbamazepine-induced serious cutaneous adverse reaction	43 European ancestry cases, 10,701 European ancestry controls	NA	6p21.33	MUC22	rs116071718-?	NR	2E-6	(conditioned on rs192543598)	3.99	[2.25-7.05]	Illumina [5271349] (imputed)	N
602	chr6_apd_hap1	2302692	2302693	rs9394030	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	MUC22	rs9394030-A	NR	7E-9		0.0193287	[0.013-0.026] unit increase	Affymetrix [321169] (imputed)	N
602	chr6_apd_hap1	2304670	2304671	rs1632865	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.33		rs1632865-T	0.584	6E-30				Affymetrix [10369434] (imputed)	N
602	chr6_apd_hap1	2305445	2305446	rs2517554	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.33		rs2517554-C	0.386	7E-33				Affymetrix [10369434] (imputed)	N
602	chr6_apd_hap1	2305759	2305760	rs62399429	33531474	Burton CL	2021-02-02	Transl Psychiatry	Genome-wide association study of pediatric obsessive-compulsive traits: shared genetic risk between traits and disorder.	Obsessive-compulsive traits	5,018 European ancestry children and adolescents	NA	6p21.33	MUC22	rs62399429-?	NR	5E-6		0.131	[0.074-0.188] unit increase	Illumina [7870334] (imputed)	N
602	chr6_apd_hap1	2306835	2306836	rs566731348	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.33	NR	rs566731348-A	0.951	4E-12		1.889	[1.71-2.07]	Illumina [11270530] (imputed)	N
602	chr6_apd_hap1	2309668	2309669	rs9262549	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MUC22	rs9262549-G	NR	2E-14		0.0228763	[0.017-0.029] unit increase	Affymetrix [321016] (imputed)	N
602	chr6_apd_hap1	2309668	2309669	rs9262549	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MUC22	rs9262549-G	NR	4E-18		0.0282059	[0.022-0.035] unit increase	Affymetrix [323123] (imputed)	N
602	chr6_apd_hap1	2310291	2310292	rs12110481	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MUC22	rs12110481-T	NR	2E-14		0.0246712	[0.018-0.031] unit decrease	Affymetrix [323123] (imputed)	N
602	chr6_apd_hap1	2313400	2313401	rs3909113	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Sutterella)	1,068 Japanese ancestry individuals	NA	6p21.33	MUC22	rs3909113-G	0.29	3E-6		0.03	[0.017-0.043] unit decrease	Illumina [6380737] (imputed)	N
602	chr6_apd_hap1	2313475	2313476	rs10947124	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	MUC22	rs10947124-T	NR	2E-9		0.0181143	[0.012-0.024] unit increase	Affymetrix [321169] (imputed)	N
602	chr6_apd_hap1	2313658	2313659	rs59356242	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LRPAP1	5,365 Icelandic ancestry individuals	NA	6p21.33		rs59356242-A	0.0137	2E-11		0.546071	[0.39-0.7] unit increase	Illumina [7506463] (imputed)	N
602	chr6_apd_hap1	2313992	2313993	rs6933349	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6p21.33		rs6933349-?	NR	1E-8		0.926525	[0.9-0.95]	NR [685523]	N
602	chr6_apd_hap1	2314080	2314081	rs7768644	26151496	Chen PL	2015-07-07	Nat Commun	Genetic determinants of antithyroid drug-induced agranulocytosis by human leukocyte antigen genotyping and genome-wide association study.	Thionamide-induced agranulocytosis in Graves' disease	21 East Asian ancestry cases with agranulocytosis, 662 East Asian ancestry cases without agranulocytosis	21 East Asian ancestry cases with agranulocytosis, 546 East Asian ancestry cases without agranulocytosis	6p21.33	HLA	rs7768644-A	0.091	3E-13	(trend)	5.01	[3.1-8.1] (allelic)	Affymetrix [522980]	N
602	chr6_apd_hap1	2314322	2314323	rs28732081	30037793	Haapasalo K	2018-09-21	Infect Immun	The Psoriasis Risk Allele <i>HLA-C*06:02</i> Shows Evidence of Association with Chronic or Recurrent Streptococcal Tonsillitis.	Tonsillitis	95 Finnish cases, 504 Finnish controls	NA	6p21.33	HLA-C, HLA-B	rs28732081-?		6E-6		4.7		Illumina [100000]	N
602	chr6_apd_hap1	2314431	2314432	rs3869098	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs3869098-A	0.528	2E-32				Affymetrix [10369434] (imputed)	N
602	chr6_apd_hap1	2314431	2314432	rs3869098	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MUC22	rs3869098-G	NR	6E-19		0.0251596	[0.02-0.031] unit increase	Affymetrix [319769] (imputed)	N
602	chr6_apd_hap1	2314431	2314432	rs3869098	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MUC22	rs3869098-G	NR	4E-11		0.0207579	[0.015-0.027] unit increase	Affymetrix [323858] (imputed)	N
602	chr6_apd_hap1	2314431	2314432	rs3869098	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	MUC22	rs3869098-G	NR	6E-18		0.0244083	[0.019-0.03] unit increase	Affymetrix [319769] (imputed)	N
602	chr6_apd_hap1	2314431	2314432	rs3869098	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	MUC22	rs3869098-G	NR	6E-10		0.0194883	[0.013-0.026] unit increase	Affymetrix [127266] (imputed)	N
602	chr6_apd_hap1	2314431	2314432	rs3869098	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MUC22	rs3869098-G	NR	1E-13		0.0208831	[0.015-0.026] unit decrease	Affymetrix [321016] (imputed)	N
602	chr6_apd_hap1	2314431	2314432	rs3869098	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MUC22	rs3869098-G	NR	3E-16		0.0252592	[0.019-0.031] unit decrease	Affymetrix [323123] (imputed)	N
602	chr6_apd_hap1	2314431	2314432	rs3869098	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	MUC22	rs3869098-G	NR	2E-15		0.0228249	[0.017-0.028] unit increase	Affymetrix [321169] (imputed)	N
602	chr6_apd_hap1	2314506	2314507	rs4248153	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MUC22	rs4248153-G	NR	3E-11		0.0193381	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
602	chr6_apd_hap1	2314506	2314507	rs4248153	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	MUC22	rs4248153-G	NR	2E-10		0.018489	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
602	chr6_apd_hap1	2314506	2314507	rs4248153	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MUC22	rs4248153-G	NR	2E-15		0.0230515	[0.017-0.029] unit decrease	Affymetrix [321016] (imputed)	N
602	chr6_apd_hap1	2314595	2314596	rs4248154	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.33		rs4248154-C	0.831	5E-19				Affymetrix [10369434] (imputed)	N
602	chr6_apd_hap1	2314595	2314596	rs4248154	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Prostate cancer	10,792 European ancestry cases, 410,350 European ancestry controls	NA	6p21.33		rs4248154-T	NR	4E-8		1.1076651	NR	Affymetrix [7846216] (imputed)	N
602	chr6_apd_hap1	2314595	2314596	rs4248154	21900946	Nakabayashi K	2011-09-08	J Hum Genet	Identification of independent risk loci for Graves' disease within the MHC in the Japanese population.	Graves' disease	1,119 Japanese ancestry cases, 2,718 Japanese ancestry controls	432 Japanese ancestry cases, 1,157 Japanese ancestry controls	6p21.33	MHC	rs4248154-C	0.54	1E-13		1.38	[1.27-1.50]	Perlegen [268068]	N
602	chr6_apd_hap1	2315448	2315449	rs34416364	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6p21.33	NR	rs34416364-G	0.90442	8E-9		1.0608954	[1.04-1.08]	Affymetrix [15688218] (imputed)	N
602	chr6_apd_hap1	2315448	2315449	rs34416364	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	6p21.33	NR	rs34416364-?	NR	4E-6		0.0711	[0.041-0.101] unit decrease	Illumina [at least 560000] (imputed)	N
602	chr6_apd_hap1	2317411	2317412	rs11753208	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	MUC22	rs11753208-T	0.08492462	2E-13	(EA, MHC class I polypeptide-related sequence A)	0.5826	[0.43-0.74] unit decrease	Affymetrix [509946]	N
602	chr6_apd_hap1	2317443	2317444	rs9262555	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	6p21.33	NR	rs9262555-?	NR	6E-13		7.194	NR z score decrease	Illumina [at least 830937] (imputed)	N
602	chr6_apd_hap1	2317469	2317470	rs141397370	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LRPAP1	5,361 Icelandic ancestry individuals	NA	6p21.33		rs141397370-T	0.01079	3E-25		0.911048	[0.74-1.08] unit increase	Illumina [7506463] (imputed)	N
602	chr6_apd_hap1	2317705	2317706	rs2844670	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MUC22	rs2844670-G	NR	2E-9		0.0247626	[0.017-0.033] unit increase	Affymetrix [323123] (imputed)	N
602	chr6_apd_hap1	2318834	2318835	rs2844665	21801394	Genin E	2011-07-29	Orphanet J Rare Dis	Genome-wide association study of Stevens-Johnson Syndrome and Toxic Epidermal Necrolysis in Europe.	Drug-induced Stevens-Johnson syndrome or toxic epidermal necrolysis (SJS/TEN)	424 European ancestry cases, 1,881 European ancestry controls	NA	6p21.33	C6orf205	rs2844665-C	0.62	3E-7		1.54	[1.30-1.82]	Illumina [268914]	N
602	chr6_apd_hap1	2318973	2318974	rs9262558	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Osteoporosis	8,520 European ancestry cases, 479,981 European ancestry controls, 9,794 East Asian ancestry cases, 168,932 East Asian ancestry controls	NA	6p21.33		rs9262558-T	NR	3E-8		0.1429	[0.092-0.194] unit decrease	Affymetrix, Illumina [25844994] (imputed)	N
602	chr6_apd_hap1	2319103	2319104	rs115730672	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Treatment or medication use - insulin product (UKB data field 20003_1140883066)	4,469 European ancestry cases, 451,807 European ancestry controls	NA	6p21.33		rs115730672-C	0.005712	3E-11		1.05	[0.74-1.36] unit increase	NR [11842647] (imputed)	N
602	chr6_apd_hap1	2324980	2324981	rs116353863	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	6p21.33	MHC	rs116353863-C	0.0165	9E-9		1.2	[1.13-1.27]	Affymetrix, Illumina [16900397] (imputed)	N
602	chr6_apd_hap1	2326707	2326707	rs770655224	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.33	MUC22	rs770655224-G	0.8871	4E-7		0.0673	[0.041-0.093] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
602	chr6_apd_hap1	2326726	2326727	rs12528596	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	6p21.33	Intergenic	rs12528596-T	NR	1E-7		0.0242361	[0.015-0.033] unit decrease	Illumina [13519193] (imputed)	N
602	chr6_apd_hap1	2326980	2326981	rs10456389	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MUC22	rs10456389-T	NR	2E-9		0.0238148	[0.016-0.032] unit decrease	Affymetrix [321016] (imputed)	N
602	chr6_apd_hap1	2328062	2328063	rs17190106	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)(bidirectional)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.33		rs17190106-G	NR	2E-10				Affymetrix [7846216] (imputed)	N
602	chr6_apd_hap1	2330891	2330892	rs73727186	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	6p21.33	HCG22, MUC22, MUC21, C6orf15, PSORS1C1, CDSN, PSORS1C2, CCHCR1, DPCR1, TCF19, POU5F1, SFTA2, VARS2, PSORS1C3, GTF2H4, DDR1, HCG27, MIR4640	rs73727186-?		6E-6	(heterogeneous)	0.235	[0.13-0.34] unit increase	Illumina [1492601] (imputed)	N
602	chr6_apd_hap1	2330891	2330892	rs73727186	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	6p21.33	HCG22, MUC22, MUC21, C6orf15, PSORS1C1, CDSN, PSORS1C2, CCHCR1, DPCR1, TCF19, POU5F1, SFTA2, VARS2, PSORS1C3, GTF2H4, DDR1, HCG27, MIR4640	rs73727186-?		5E-6	(dominant)	0.233	[-0.43732-0.90332] unit increase	Illumina [1492601] (imputed)	N
602	chr6_apd_hap1	2331684	2331685	rs2251830	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	6p21.33	HCG22	rs2251830-A	0.36	5E-22		0.053	[0.041-0.065] unit increase	Affymetrix, Illumina [2704730] (imputed)	N
602	chr6_apd_hap1	2333114	2333115	rs2517532	22493691	Eriksson N	2012-04-06	PLoS One	Novel associations for hypothyroidism include known autoimmune risk loci.	Hypothyroidism	3,736 European ancestry cases, 35,546 European ancestry controls	NA	6p21.33	HLA-C, LOC729792, HCG22, C6orf15, DHFRP2, HCP5, HLA-B	rs2517532-G	0.597	1E-8		1.16	[1.10-1.22]	Illumina [870065]	N
602	chr6_apd_hap1	2333253	2333254	rs2523864	25813999	Jeong S	2015-04-01	Invest Ophthalmol Vis Sci	Identification of a Novel Mucin Gene HCG22 Associated With Steroid-Induced Ocular Hypertension.	Change in intraocular pressure in response to steroid treatment (triamcinolone acetonide)	64 European ancestry individuals	49 European ancestry individuals	6p21.33	HCG22, HLA-A, HLA-B, MUC22	rs2523864-T	0.412	5E-9				Illumina [1545328]	N
602	chr6_apd_hap1	2334979	2334980	rs9262602	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p21.33	NR	rs9262602-G	0.132	2E-8	(IFNAR2_of_CD20p)			Illumina [5084123] (imputed)	N
602	chr6_apd_hap1	2335236	2335237	rs77203474	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Antisaccade task score	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	6p21.33	HCG22	rs77203474-A	NR	3E-6		0.1378235	[0.079-0.197] unit decrease	Illumina [> 6200000] (imputed)	N
602	chr6_apd_hap1	2335641	2335642	rs4713428	26584805	Dorajoo R	2015-11-19	Genes Nutr	A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.	Plasma omega-3 polyunsaturated fatty acid level (eicosapentaenoic acid)	717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls	NA	6p21.33	NR	rs4713428-G	0.294	7E-6		0.0854	[0.048-0.123] unit decrease	Illumina [up to 1980188] (imputed)	N
602	chr6_apd_hap1	2336866	2336867	rs2523855	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCG22	rs2523855-C	NR	2E-10		0.0207136	[0.014-0.027] unit decrease	Affymetrix [323123] (imputed)	N
602	chr6_apd_hap1	2337536	2337537	rs2905757	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCG22	rs2905757-T	NR	5E-12		0.0207441	[0.015-0.027] unit increase	Affymetrix [319769] (imputed)	N
602	chr6_apd_hap1	2337536	2337537	rs2905757	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HCG22	rs2905757-T	NR	3E-11		0.0199898	[0.014-0.026] unit increase	Affymetrix [319769] (imputed)	N
602	chr6_apd_hap1	2337536	2337537	rs2905757	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCG22	rs2905757-T	NR	3E-8		0.0166947	[0.011-0.023] unit decrease	Affymetrix [321016] (imputed)	N
602	chr6_apd_hap1	2339310	2339311	rs9262631	26151496	Chen PL	2015-07-07	Nat Commun	Genetic determinants of antithyroid drug-induced agranulocytosis by human leukocyte antigen genotyping and genome-wide association study.	Thionamide-induced agranulocytosis in Graves' disease	21 East Asian ancestry cases with agranulocytosis, 662 East Asian ancestry cases without agranulocytosis	21 East Asian ancestry cases with agranulocytosis, 546 East Asian ancestry cases without agranulocytosis	6p21.33	HLA	rs9262631-A	0.063	6E-19	(trend)	7.09	[4.32-11.63] (allelic)	Affymetrix [522980]	N
602	chr6_apd_hap1	2339517	2339518	rs9262632	21051598	Pereyra F	2010-11-04	Science	The major genetic determinants of HIV-1 control affect HLA class I peptide presentation.	HIV-1 control	516 European cases, 1,196 European controls, 341 African American cases, 892 African American controls, 117 Hispanic cases, 560 Hispanic controls	NA	6p21.33	intergenic	rs9262632-G	0.10	1E-8	(AA)	3.1	[NR]	Illumina [1384048] (imputed)	N
602	chr6_apd_hap1	2340945	2340946	rs76541615	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	6p21.33	MHC-region	rs76541615-T	0.796	1E-17		1.08	[1.06-1.09]	Affymetrix, Illumina [11800000] (imputed)	N
602	chr6_apd_hap1	2342045	2342046	rs2517521	32589924	Bi W	2020-06-23	Am J Hum Genet	A Fast and Accurate Method for Genome-Wide Time-to-Event Data Analysis and Its Application to UK Biobank.	Hyperlipidemia (time to event)	35,623 British ancestry cases, 247,248 British ancestry controls	NA	6p21.33	HCG22	rs2517521-?	NR	3E-8				NR [~ 24000000] (imputed)	N
602	chr6_apd_hap1	2342045	2342046	rs2517521	32589924	Bi W	2020-06-23	Am J Hum Genet	A Fast and Accurate Method for Genome-Wide Time-to-Event Data Analysis and Its Application to UK Biobank.	Essential hypertension (time to event)	76,566 British ancestry cases, 206,305 British ancestry controls	NA	6p21.33	HCG2248	rs2517521-?	NR	4E-8				NR [~ 24000000] (imputed)	N
602	chr6_apd_hap1	2342278	2342279	rs78725346	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.33	NR	rs78725346-A	0.01045	3E-8	(CKB)	0.03173	NR unit increase	Illumina [1671387] (imputed)	N
602	chr6_apd_hap1	2343991	2343992	rs2523842	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCG22	rs2523842-A	NR	2E-9		0.0493584	[0.033-0.066] unit decrease	Affymetrix [321016] (imputed)	N
602	chr6_apd_hap1	2344164	2344165	rs9262651	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HCG22	rs9262651-T	NR	3E-11		0.0220473	[0.016-0.029] unit increase	Affymetrix [321169] (imputed)	N
602	chr6_apd_hap1	2344831	2344832	rs2517510	21738480	Nalls MA	2011-07-01	PLoS Genet	Multiple loci are associated with white blood cell phenotypes.	White blood cell count	19,509 European ancestry individuals	11,823 European ancestry individuals	6p21.33	PSORS1C1, MUC21, HCG22, C6orf15, CCHCR1, CDSN, PSORS1C2	rs2517510-T		4E-13	(WBC)	0.0129	[0.0094-0.0164] unit decrease	Affymetrix, Illumina [> 2400000] (imputed)	N
602	chr6_apd_hap1	2348352	2348353	rs149917912	33841421	Li J	2021-03-25	Front Immunol	Variants at the MHC Region Associate With Susceptibility to <i>Clostridioides difficile</i> Infection: A Genome-Wide Association Study Using Comprehensive Electronic Health Records.	Clostridioides difficle infection	1,160 European ancestry cases, 14,144 European ancestry controls	NA	6p21.33	NR	rs149917912-C	0.0242	5E-6		1.67	[1.37-2]	Illumina [64973696] (imputed)	N
602	chr6_apd_hap1	2349040	2349041	rs75056122	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.33	NR	rs75056122-T	0.01045	3E-8	(CKB)	0.03173	NR unit increase	Illumina [1671387] (imputed)	N
602	chr6_apd_hap1	2349304	2349305	rs3094089	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCG22	rs3094089-C	NR	1E-9		0.021023	[0.014-0.028] unit decrease	Affymetrix [323858] (imputed)	N
602	chr6_apd_hap1	2349304	2349305	rs3094089	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HCG22	rs3094089-C	NR	7E-9		0.0200851	[0.013-0.027] unit decrease	Affymetrix [127266] (imputed)	N
602	chr6_apd_hap1	2349900	2349901	rs3132567	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HCG22	rs3132567-T	NR	3E-8		0.0202317	[0.013-0.027] unit decrease	Affymetrix [319769] (imputed)	N
602	chr6_apd_hap1	2350261	2350262	rs192064582	32141793	Garman L	2020-03-06	Ocul Immunol Inflamm	Genome-Wide Association Study of Ocular Sarcoidosis Confirms HLA Associations and Implicates Barrier Function and Autoimmunity in African Americans.	Ocular sarcoidosis	260 African American cases, 1,551 African American controls	NA	6p21.33	NR	rs192064582-T	NR	8E-6		1.747	[1.37-2.23]	Illumina [13976150] (imputed)	N
602	chr6_apd_hap1	2350281	2350282	rs184099286	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	QRS duration	3,274 African American individuals, 13,420 Hispanic/Latino individuals, 126 Asian ancestry individuals, 226 Native American ancestry individuals	NA	6p21.33	HCG22	rs184099286-?	NR	5E-9	(Hispanic/Latino)	1.17582	[0.78-1.57] unit decrease	Illumina [26566045] (imputed)	N
602	chr6_apd_hap1	2355365	2355365	rs145214406	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.33	NR	rs145214406-CAA	0.012	1E-12		0.593265	[0.43-0.76] unit increase	Affymetrix [up to 8900000] (imputed)	N
602	chr6_apd_hap1	2358640	2358641	rs2517481	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Growth differentiation factor-15 levels	21,758 European ancestry individuals	9,173 individuals	6p21.33		rs2517481-C	0.41	3E-9		0.0481	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
606	chr6_apd_hap1	2761505	2761506	rs2248462	22286212	Urayama KY	2012-01-27	J Natl Cancer Inst	Genome-wide association study of classical Hodgkin lymphoma and Epstein-Barr virus status-defined subgroups.	Hodgkin's lymphoma	1,200 European ancestry cases, 6,417 European ancestry controls	563 European ancestry cases, 613 European ancestry controls	6p21.33	MICB	rs2248462-?	NR	7E-16	(Total cHL)	1.64	[1.45-1.85]	Illumina [502514]	N
606	chr6_apd_hap1	2762297	2762298	rs2516513	32376702	Shen J	2020-05-06	mSphere	Genetic Association Reveals Protection against Recurrence of Clostridium difficile Infection with Bezlotoxumab Treatment.	Recurrence of Clostridium difficile infection x bezlotuxumab treatment interaction (2df test)	704 European, African American and Asian ancestry individuals	NA	6p21.33	NR	rs2516513-T	0.41	3E-8				Affymetrix [7570264] (imputed)	N
606	chr6_apd_hap1	2763361	2763362	rs116518228	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCP5	rs116518228-T	NR	2E-8		0.032993	[0.022-0.044] unit decrease	Affymetrix [323123] (imputed)	N
606	chr6_apd_hap1	2763571	2763572	rs3749946	24837172	Juyal G	2014-05-16	Gut	Genome-wide association scan in north Indians reveals three novel HLA-independent risk loci for ulcerative colitis.	Ulcerative colitis	603 North Indian ancestry cases, 622 North Indian ancestry controls	733 North Indian ancestry cases, 1,148 North Indian ancestry controls	6p21.33	3.8-1, HCG26	rs3749946-A	0.07	2E-15		1.97	[1.66-2.33]	Illumina [480391]	N
606	chr6_apd_hap1	2763685	2763686	rs3099844	22399527	Kristiansson K	2012-03-07	Circ Cardiovasc Genet	Genome-wide screen for metabolic syndrome susceptibility Loci reveals strong lipid gene contribution but no evidence for common genetic basis for clustering of metabolic syndrome traits.	Metabolic syndrome	2,637 European ancestry cases, 7,927 European ancestry controls	NA	6p21.33	HCG26, MICB	rs3099844-A	0.08	2E-8	(HDL)	0.15	[NR] mmol/l decrease	Illumina [1257079] (imputed)	N
606	chr6_apd_hap1	2763685	2763686	rs3099844	20662065	Clancy RM	2010-07-26	Arthritis Rheum	Identification of candidate loci at 6p21 and 21q22 in a genome-wide association study of cardiac manifestations of neonatal lupus.	Neonatal lupus	116 European ancestry cases, 3,351 European ancestry controls	NA	6p21.33	NFKBIL1, LTA, AIF1, TNF, LTB	rs3099844-?	0.11	5E-10		3.34	[2.29-4.89]	Illumina [346110]	N
606	chr6_apd_hap1	2763731	2763732	rs2523650	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	6p21.33	HCG26, MICB, HCP5, MCCD1, ATP6V1G2-DDX39B, DDX39B, SNORD117, SNORD84, DDX39B-AS1, ATP6V1G2, NFKBIL1, MICA, LTA, TNF, LTB, LST1, NCR3, HLA-B, AIF1, PRRC2A, SNORA38, MIR6832, BAG6, APOM, C6orf47, GPANK1, CSNK2B, LY6G5B, LY6G5C, ABHD16A, MIR4646, LY6G6F, LY6G6E, LY6G6D, LY6G6C, C6orf25, DDAH2	rs2523650-?		5E-7	(recessive)	0.167	[0.1-0.23] unit decrease	Illumina [1492601] (imputed)	N
606	chr6_apd_hap1	2763731	2763732	rs2523650	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	6p21.33	HCG26, MICB, HCP5, MCCD1, ATP6V1G2-DDX39B, DDX39B, SNORD117, SNORD84, DDX39B-AS1, ATP6V1G2, NFKBIL1, MICA, LTA, TNF, LTB, LST1, NCR3, HLA-B, AIF1, PRRC2A, SNORA38, MIR6832, BAG6, APOM, C6orf47, GPANK1, CSNK2B, LY6G5B, LY6G5C, ABHD16A, MIR4646, LY6G6F, LY6G6E, LY6G6D, LY6G6C, C6orf25, DDAH2	rs2523650-?		3E-6	(additive)	0.121	[0.07-0.172] unit decrease	Illumina [1492601] (imputed)	N
606	chr6_apd_hap1	2763731	2763732	rs2523650	31189108	O'Connor D	2019-06-01	Cell Rep	Common Genetic Variations Associated with the Persistence of Immunity following Childhood Immunization.	Tetanus toxoid IgG concentrations post childhood immunization	549 European ancestry children and adolescents	1,303 European ancestry children and adolescents	6p21.33	NR	rs2523650-?	NR	1E-9		0.1117	[0.076-0.147] unit increase	Illumina [~ 6700000] (imputed)	N
606	chr6_apd_hap1	2764327	2764328	rs2516420	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	6p21.33	MHC	rs2516420-C	0.9263	1E-7		1.1	[1.06-1.13]	Affymetrix, Illumina [16900397] (imputed)	N
606	chr6_apd_hap1	2764349	2764350	rs2523648	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCP5	rs2523648-A	NR	4E-8		0.0208118	[0.013-0.028] unit increase	Affymetrix [323858] (imputed)	N
606	chr6_apd_hap1	2764349	2764350	rs2523648	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HCP5	rs2523648-A	NR	5E-8		0.0207421	[0.013-0.028] unit increase	Affymetrix [127266] (imputed)	N
606	chr6_apd_hap1	2765423	2765424	rs2905752	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	6p21.33	Intergenic	rs2905752-G	NR	2E-7		0.0193848	[0.012-0.027] unit decrease	Illumina [13519193] (imputed)	N
606	chr6_apd_hap1	2765616	2765617	rs2523710	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	Intergenic	rs2523710-A	0.2052314	6E-15	(EA, MHC class I polypeptide-related sequence A)	0.4247	[0.32-0.53] unit decrease	Affymetrix [509946]	N
606	chr6_apd_hap1	2766554	2766555	rs2904602	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCP5	rs2904602-A	NR	1E-9		0.0273048	[0.019-0.036] unit decrease	Affymetrix [321016] (imputed)	N
606	chr6_apd_hap1	2766746	2766747	rs143439747	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs143439747-A	0.049	9E-14	(Natural cytotoxicity triggering receptor 3, NCR3.3003.29.2)	0.42	[0.3-0.54] unit decrease	Affymetrix [10572788] (imputed)	N
606	chr6_apd_hap1	2766746	2766747	rs143439747	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mumps	31,227 European ancestry cases, 54,153 European ancestry controls	NA	6p21.33	NR	rs143439747-?	NR	4E-6		0.1204	[0.069-0.171] unit increase	Illumina [at least 560000] (imputed)	N
606	chr6_apd_hap1	2766810	2766811	rs28525417	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCP5	rs28525417-G	NR	3E-8		0.0185461	[0.012-0.025] unit decrease	Affymetrix [323123] (imputed)	N
606	chr6_apd_hap1	2766810	2766811	rs28525417	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HCP5	rs28525417-G	NR	4E-8		0.0171664	[0.011-0.023] unit increase	Affymetrix [321169] (imputed)	N
606	chr6_apd_hap1	2766999	2767000	rs2905741	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (underestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	6p21.33	NR	rs2905741-?	NR	1E-8		5.689	NR z score increase	Illumina [at least 830937] (imputed)	N
606	chr6_apd_hap1	2767117	2767121	rs144801046	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls, 20,367 East Asian ancestry cases, 158,359 East Asian ancestry controls	NA	6p21.33		rs144801046-C	NR	2E-13		0.1571	[0.12-0.2] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
606	chr6_apd_hap1	2767117	2767121	rs144801046	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (beta blocking agents)	20,367 East Asian ancestry cases, 158,359 East Asian ancestry controls	NA	6p21.33		rs144801046-C	0.072674614	2E-13		0.15705363	[0.12-0.2] unit increase	Illumina [13134967] (imputed)	N
606	chr6_apd_hap1	2767139	2767140	rs2904789	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.33	NR	rs2904789-?	NR	5E-11				Affymetrix [~ 8270000] (imputed)	N
606	chr6_apd_hap1	2767997	2767998	rs2905736	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MICB	5,365 Icelandic ancestry individuals	NA	6p21.33		rs2905736-A	0.0328	1E-193		1.45308	[1.36-1.55] unit increase	Illumina [7506463] (imputed)	N
606	chr6_apd_hap1	2767997	2767998	rs2905736	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	MICB, LST1, HCP5, XXbac-BPG181B23.6, XXbac-BPG16N22.5, DDX39B, ATP6V1G2, TNF, NCR3, PRRC2A, CSNK2B, GPANK1, LY6G5B, CLIC1, MSH5, VARS, Y_RNA, PPIAP9, RPL15P4, MCCD1, SNORD117, ATP6V1G2-DDX39B, AL662801.1, DDX39B-AS1, SNORD84, NFKBIL1, LTB, LTA, SNORA38, BAG6, CSNK2B-LY6G5B--991, C6orf47-AS1, C6orf47, MSH5-SAPCD1	rs2905736-A	0.03109328	2E-27	(EA, MHC class I polypeptide-related sequence B)	1.367	[1.13-1.61] unit increase	Affymetrix [509946]	N
606	chr6_apd_hap1	2768254	2768255	rs2428501	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.33	Intergenic	rs2428501-G	NR	1E-6	(men)	0.0231006	[0.014-0.032] unit decrease	Illumina [13520550] (imputed)	N
606	chr6_apd_hap1	2769069	2769070	rs144596166	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MICB	rs144596166-G	NR	4E-8		0.0340564	[0.022-0.046] unit decrease	Affymetrix [321016] (imputed)	N
606	chr6_apd_hap1	2770232	2770233	rs9267235	31235810	Fung K	2019-06-24	Sci Rep	Genome-wide association study identifies loci for arterial stiffness index in 127,121 UK Biobank participants.	Arterial stiffness index	127,121 European ancestry individuals	NA	6p21.33	MICB	rs9267235-T	0.954	7E-6		0.044	[0.024-0.064] unit increase	Affymetrix [~ 10446505] (imputed)	N
606	chr6_apd_hap1	2770815	2770816	rs28664826	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs28664826-A	0.396	1E-46	(MHC class I polypeptide-related sequence B, MICB.5102.55.3)	0.38	[0.32-0.44] unit decrease	Affymetrix [10572788] (imputed)	N
606	chr6_apd_hap1	2770969	2770970	rs9267257	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p21.33	NR	rs9267257-?	NR	2E-9		0.0961	[0.065-0.127] unit decrease	Illumina [at least 560000] (imputed)	N
606	chr6_apd_hap1	2772191	2772192	rs150971914	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MICB	rs150971914-T	NR	2E-15		0.0653082	[0.049-0.081] unit decrease	Affymetrix [321016] (imputed)	N
606	chr6_apd_hap1	2772191	2772192	rs150971914	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MICB	rs150971914-T	NR	7E-9		0.0517554	[0.034-0.069] unit decrease	Affymetrix [323123] (imputed)	N
606	chr6_apd_hap1	2773690	2773691	rs2016572	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	6p21.33	NR	rs2016572-G	0.331938	6E-12		0.0260936	[0.019-0.033] unit increase	Affymetrix [16577313] (imputed)	N
606	chr6_apd_hap1	2774049	2774050	rs12192123	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol use disorder	57,564 European ancestry cases, 256,395 European ancestry controls	NA	6p21.33	NR	rs12192123-A	0.2321	2E-8		5.593	[NR] unit decrease	Affymetrix [7003540] (imputed)	N
606	chr6_apd_hap1	2774678	2774679	rs2904783	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p21.33	NR	rs2904783-C	0.402	9E-6	(IFNalpha_STAT1_of_CD4p_T)			Illumina [5084123] (imputed)	N
606	chr6_apd_hap1	2775749	2775750	rs12195665	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MICB	rs12195665-A	NR	3E-10		0.0197044	[0.014-0.026] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_apd_hap1	2775749	2775750	rs12195665	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	MICB	rs12195665-A	NR	4E-10		0.0195546	[0.013-0.026] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_apd_hap1	2775749	2775750	rs12195665	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	MICB	rs12195665-A	NR	2E-12		0.0223504	[0.016-0.029] unit increase	Affymetrix [321169] (imputed)	N
606	chr6_apd_hap1	2775759	2775760	rs12202667	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MICB	rs12202667-C	NR	4E-8		0.018764	[0.012-0.025] unit decrease	Affymetrix [323123] (imputed)	N
606	chr6_apd_hap1	2775838	2775839	rs2904597	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MICB	rs2904597-G	NR	3E-10		0.0229697	[0.016-0.03] unit increase	Affymetrix [323858] (imputed)	N
606	chr6_apd_hap1	2775838	2775839	rs2904597	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	MICB	rs2904597-G	NR	4E-10		0.0228883	[0.016-0.03] unit increase	Affymetrix [127266] (imputed)	N
606	chr6_apd_hap1	2775838	2775839	rs2904597	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.33	MICB	rs2904597-G	NR	4E-11		0.0218802	[0.015-0.028] unit increase	Affymetrix [321114] (imputed)	N
606	chr6_apd_hap1	2776078	2776079	rs2507971	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	6p21.33	MICB	rs2507971-A	0.382584	8E-17		0.022113472	[0.017-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
606	chr6_apd_hap1	2776078	2776079	rs2507971	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	6p21.33	MICB	rs2507971-T	0.6165	3E-49		0.05419588	[0.047-0.061] unit decrease	Affymetrix [~ 2500000] (imputed)	N
606	chr6_apd_hap1	2776198	2776199	rs9267325	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	MICB	rs9267325-C	NR	2E-8		0.0226374	[0.015-0.031] unit increase	Affymetrix [321169] (imputed)	N
606	chr6_apd_hap1	2776264	2776265	rs3094006	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	6p21.33	MICB	rs3094006-C	0.726	1E-12		0.02938566	[0.021-0.037] unit decrease	Affymetrix [~ 2500000] (imputed)	N
606	chr6_apd_hap1	2776417	2776418	rs2395040	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs2395040-A	0.535	6E-23				Affymetrix [10369434] (imputed)	N
606	chr6_apd_hap1	2776417	2776418	rs2395040	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	6p21.33	NR	rs2395040-?	NR	9E-7				Illumina [at least 7383741] (imputed)	N
606	chr6_apd_hap1	2776662	2776663	rs113239947	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	MICB	rs113239947-T	NR	5E-10		0.0206455	[0.014-0.027] unit increase	Affymetrix [321169] (imputed)	N
606	chr6_apd_hap1	2777030	2777031	rs2516411	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MICB	5,339 Icelandic ancestry individuals	NA	6p21.33		rs2516411-A	0.1051	9E-72		0.494444	[0.44-0.55] unit increase	Illumina [7506463] (imputed)	N
606	chr6_apd_hap1	2777312	2777312	rs10661543	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MICB	rs10661543-CAAAA	NR	7E-9		0.0186799	[0.012-0.025] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_apd_hap1	2777312	2777312	rs10661543	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MICB	rs10661543-CAAAA	NR	2E-9		0.0215387	[0.015-0.029] unit increase	Affymetrix [323858] (imputed)	N
606	chr6_apd_hap1	2777312	2777312	rs10661543	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	MICB	rs10661543-CAAAA	NR	1E-8		0.0183279	[0.012-0.025] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_apd_hap1	2777312	2777312	rs10661543	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	MICB	rs10661543-CAAAA	NR	2E-8		0.0201129	[0.013-0.027] unit increase	Affymetrix [127266] (imputed)	N
606	chr6_apd_hap1	2777312	2777312	rs10661543	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MICB	rs10661543-CAAAA	NR	4E-8		0.017737	[0.011-0.024] unit decrease	Affymetrix [321016] (imputed)	N
606	chr6_apd_hap1	2777450	2777450	rs557297301	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	MICB	rs557297301-CGAGGA	NR	4E-8		0.0173075	[0.011-0.023] unit increase	Affymetrix [321169] (imputed)	N
606	chr6_apd_hap1	2777637	2777638	rs2534681	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MICB	rs2534681-A	NR	6E-11		0.0184043	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_apd_hap1	2777637	2777638	rs2534681	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	MICB	rs2534681-A	NR	1E-10		0.0181502	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_apd_hap1	2777637	2777638	rs2534681	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	MICB	rs2534681-A	NR	1E-11		0.0192736	[0.014-0.025] unit increase	Affymetrix [321169] (imputed)	N
606	chr6_apd_hap1	2777637	2777638	rs2534681	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	6p21.33	Intergenic	rs2534681-A	0.4679	1E-10	(MTAG)	0.0106	[0.0073-0.0139] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
606	chr6_apd_hap1	2778086	2778087	rs72844762	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.33		rs72844762-G	0.967	3E-22				Affymetrix [10369434] (imputed)	N
606	chr6_apd_hap1	2778086	2778087	rs72844762	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	6p21.33	MICB	rs72844762-A	0.034026	3E-11		0.042991024	[0.03-0.056] unit increase	Affymetrix [93095623] (imputed)	N
606	chr6_apd_hap1	2778197	2778198	rs2516408	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	MICB	rs2516408-A	NR	1E-10		0.0219255	[0.015-0.029] unit decrease	Affymetrix [127266] (imputed)	N
606	chr6_apd_hap1	2779753	2779754	rs3094005	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	HLA-B, MICB, DDX39B, HCG22, HLA-C, XXbac-BPG248L24.12, ZDHHC20P2, MICA, HCP5, SNORD84, LTB, LTA, LST1, NCR3, HCG27, XXbac-BPG299F13.14, XXbac-BPG299F13.15, XXbac-BPG299F13.16, MIR6891, DHFRP2, RNU6-283P, AL671883.1, FGFR3P1, HLA-S, XXbac-BPG181B23.7, LINC01149, XXbac-BPG181B23.6, Y_RNA, XXbac-BPG16N22.5, PPIAP9, DDX39B-AS1, SNORD117, ATP6V1G2-DDX39B, AL662801.1, ATP6V1G2, NFKBIL1, TNF	rs3094005-T	0.09437751	4E-38	(MHC class I polypeptide-related sequence B)	0.9308	[0.8-1.07] unit decrease	Affymetrix [509946]	N
606	chr6_apd_hap1	2779809	2779810	rs2534674	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	MICB, Y_RNA	rs2534674-T	0.3517588	7E-16	(EA, MHC class I polypeptide-related sequence B)	0.3579	[0.27-0.44] unit increase	Affymetrix [509946]	N
606	chr6_apd_hap1	2780763	2780764	rs3828919	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	6p21.33	MICB	rs3828919-A	0.044243	9E-12		0.038664818	[0.028-0.05] unit increase	Affymetrix [93095623] (imputed)	N
606	chr6_apd_hap1	2780923	2780924	rs41293864	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Strep throat	52,487 European ancestry cases, 22,017 European ancestry controls	NA	6p21.33	NR	rs41293864-?	NR	2E-8		0.0446	[0.029-0.06] unit increase	Illumina [at least 560000] (imputed)	N
606	chr6_apd_hap1	2780974	2780975	rs9267374	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MICB	rs9267374-C	NR	1E-11		0.0224498	[0.016-0.029] unit decrease	Affymetrix [323123] (imputed)	N
606	chr6_apd_hap1	2782679	2782680	rs9378160	30940813	Kranzler HR	2019-04-02	Nat Commun	Genome-wide association study of alcohol consumption and use disorder in 274,424 individuals from multiple populations.	Alcohol use disorder	34,658 European American cases, 167,346 European American controls, 17,267 African American cases, 39,381 African American controls, 3,449 Latino American cases, 10,726 Latino American controls, 164 East Asian American cases, 1,210 East Asian American controls, 46 South Asian American cases, 144 South Asian American controls	NA	6p21.33	MICB	rs9378160-C	0.719	2E-8	(Latino)	1.1890606	[1.13-1.25]	Affymetrix [up to 12500000] (imputed)	N
606	chr6_apd_hap1	2782898	2782899	rs188935761	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 142,336 Japanese ancestry controls	NA	6p21.33	MICB	rs188935761-?	NR	5E-6		0.613998	[0.35-0.88] unit increase	Illumina [19707525] (imputed)	N
606	chr6_apd_hap1	2784278	2784279	rs2534664	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MICB	rs2534664-A	NR	2E-13		0.0226003	[0.017-0.029] unit decrease	Affymetrix [323123] (imputed)	N
606	chr6_apd_hap1	2786488	2786489	rs2855811	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.33	NR	rs2855811-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
606	chr6_apd_hap1	2787408	2787409	rs2855812	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.33	NR	rs2855812-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
606	chr6_apd_hap1	2787408	2787409	rs2855812	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma and major depressive disorder	46,802 European ancestry asthma cases, 59,851 European ancestry major depressive disorder cases, 460,635 European ancestry controls	NA	6p21.33	AIF1, APOM, ATP6V1G2, BAG6, C6orf15, C6orf25, C6orf47, C6orf48, CDSN, CLIC1, CSNK2B, DDAH2, DDX39B, HCG26, HCG27, HCP5, HLA-B, HSPA1A, HSPA1B, HSPA1L, LSM2, LST1, LTA, LTB, LY6G5B, LY6G5C, LY6G6C, LY6G6D, LY6G6E, LY6G6F, MCCD1, MICA, MICB, MIR4646, MIR6832, MIR6891, MSH5, MSH5-SAPCD1, NCR3, NEU1, NFKBIL1, POU5F1, PRRC2A, PSORS1C1, PSORS1C2, PSORS1C3, SAPCD1, SLC44A4, SNORA38, SNORD48, SNORD52, SNORD84, SNORD117, TCF19, TNF, VARS, VWA7, HLA-C, CCHCR1, GPANK1, ABHD16A	rs2855812-?	NR	2E-16				Affymetrix [up to 13554551] (imputed)	N
606	chr6_apd_hap1	2787408	2787409	rs2855812	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma (childhood onset)	9,676 European ancestry cases, 347,481 European ancestry controls	NA	6p21.33	ABHD16A, AIF1, APOM, ATP6V1G2, ATP6V1G2-DDX39B, BAG6, C6orf15, C6orf25, C6orf47, C6orf48, CCHCR1, CDSN, CLIC1, CSNK2B, DDAH2, DDX39B, GPANK1, HCG26, HCG27, HCP5, HLA-B, HLA-C, HSPA1A, HSPA1B, HSPA1L, LSM2, LST1, LTA, LTB, LY6G5B, LY6G5C, LY6G6C, LY6G6D, LY6G6E, LY6G6F, MCCD1, MICA, MICB, MIR4646, MIR6832, MIR6891, MSH5, MSH5-SAPCD1, NCR3, NEU1, NFKBIL1, POU5F1, PRRC2A, PSORS1C1, PSORS1C2, PSORS1C3, SAPCD1, SLC44A4, SNORA38, SNORD48, SNORD52, SNORD84, SNORD117, TCF19, TNF, VARS, VWA7	rs2855812-?	NR	4E-7		0.118096	[0.071-0.165] unit decrease	Affymetrix [8274727] (imputed)	N
606	chr6_apd_hap1	2787408	2787409	rs2855812	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs2855812-G	0.7990625	8E-9	(PDIA5, 5593_11_3)	0.1749456	[0.12-0.23] unit decrease	Illumina [> 1000000] (imputed)	N
606	chr6_apd_hap1	2787408	2787409	rs2855812	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs2855812-G	0.7990625	8E-14	(C4A C4B, 4481_34_2)	0.23044567	[0.17-0.29] unit increase	Illumina [> 1000000] (imputed)	N
606	chr6_apd_hap1	2787408	2787409	rs2855812	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs2855812-G	0.7990625	7E-11	(C2, 3186_2_2)	0.20260093	[0.14-0.26] unit decrease	Illumina [> 1000000] (imputed)	N
606	chr6_apd_hap1	2787408	2787409	rs2855812	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs2855812-G	0.7990625	5E-9	(PILRA, 8683_119_3)	0.17610262	[0.12-0.24] unit decrease	Illumina [> 1000000] (imputed)	N
606	chr6_apd_hap1	2787408	2787409	rs2855812	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs2855812-G	0.7990625	3E-25	(ISG15, 14148_2_3)	0.31585807	[0.26-0.37] unit decrease	Illumina [> 1000000] (imputed)	N
606	chr6_apd_hap1	2787408	2787409	rs2855812	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs2855812-G	0.7990625	2E-9	(RACGAP1, 13587_10_3)	0.18150227	[0.12-0.24] unit decrease	Illumina [> 1000000] (imputed)	N
606	chr6_apd_hap1	2787408	2787409	rs2855812	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs2855812-G	0.7990625	2E-25	(MICB, 9328_55_3)	0.31198063	[0.25-0.37] unit increase	Illumina [> 1000000] (imputed)	N
606	chr6_apd_hap1	2787408	2787409	rs2855812	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs2855812-G	0.7990625	2E-19	(FTMT, 8048_9_3)	0.27116117	[0.21-0.33] unit increase	Illumina [> 1000000] (imputed)	N
606	chr6_apd_hap1	2787408	2787409	rs2855812	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs2855812-G	0.7990625	2E-126	(MICB, 5102_55_3)	0.69572484	[0.64-0.75] unit increase	Illumina [> 1000000] (imputed)	N
606	chr6_apd_hap1	2787408	2787409	rs2855812	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs2855812-G	0.7990625	1E-10	(CREB3L4, 11308_8_3)	0.18975821	[0.13-0.25] unit decrease	Illumina [> 1000000] (imputed)	N
606	chr6_apd_hap1	2787408	2787409	rs2855812	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls, 2,149 African ancestry cases, 6,055 African ancestry controls, 1,239 Japanese ancestry cases, 3,976 Japanese ancestry controls, 606 Latino cases, 792 Latino controls	NA	6p21.33	MICB, HCP5, MCCD1	rs2855812-T	0.23	9E-12		1.1	[1.07-1.13]	Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
606	chr6_apd_hap1	2787408	2787409	rs2855812	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls	NA	6p21.33	MICB, MICA, MCCD1	rs2855812-T	0.23	3E-10		0.09	[0.07-0.11] unit increase	Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
606	chr6_apd_hap1	2787408	2787409	rs2855812	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p21.33	NR	rs2855812-?	NR	1E-16		0.213	[0.16-0.26] unit increase	Illumina [at least 560000] (imputed)	N
606	chr6_apd_hap1	2787408	2787409	rs2855812	28235828	Traglia M	2017-04-03	G3 (Bethesda)	Independent Maternal and Fetal Genetic Effects on Midgestational Circulating Levels of Environmental Pollutants.	Midgestational circulating levels of PBDEs	329 Hispanic mothers, 273 European ancestry mothers, 122 Asian ancestry mothers, 23 South Asian ancestry mothers, 21 African American mothers, 22 other ancestry mothers	NA	6p21.33	MICB	rs2855812-?		8E-7	(BDE-47)	0.33	[0.19-0.47] unit decrease	Affymetrix [629686]	N
606	chr6_apd_hap1	2787408	2787409	rs2855812	28235828	Traglia M	2017-04-03	G3 (Bethesda)	Independent Maternal and Fetal Genetic Effects on Midgestational Circulating Levels of Environmental Pollutants.	Midgestational circulating levels of PBDEs	329 Hispanic mothers, 273 European ancestry mothers, 122 Asian ancestry mothers, 23 South Asian ancestry mothers, 21 African American mothers, 22 other ancestry mothers	NA	6p21.33	MICB	rs2855812-?		3E-7	(BDE-100)	0.35	[0.21-0.49] unit decrease	Affymetrix [629686]	N
606	chr6_apd_hap1	2787408	2787409	rs2855812	28235828	Traglia M	2017-04-03	G3 (Bethesda)	Independent Maternal and Fetal Genetic Effects on Midgestational Circulating Levels of Environmental Pollutants.	Midgestational circulating levels of PBDEs	329 Hispanic mothers, 273 European ancestry mothers, 122 Asian ancestry mothers, 23 South Asian ancestry mothers, 21 African American mothers, 22 other ancestry mothers	NA	6p21.33	MICB	rs2855812-?		2E-6	(Sum PBDE)	0.29	[0.17-0.41] unit decrease	Affymetrix [629686]	N
606	chr6_apd_hap1	2787408	2787409	rs2855812	21946350	Soler Artigas M	2011-09-25	Nat Genet	Genome-wide association and large-scale follow up identifies 16 new loci influencing lung function.	Pulmonary function	48,201 European ancestry individuals	46,411 European ancestry individuals	6p21.33	MICB	rs2855812-T	NR	2E-7	(FEV1)	0.03	[0.018-0.042] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
606	chr6_apd_hap1	2788645	2788646	rs3134900	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MICB	5,365 Icelandic ancestry individuals	NA	6p21.33		rs3134900-G	0.08239	7E-220		1.01394	[0.95-1.08] unit decrease	Illumina [7506463] (imputed)	N
606	chr6_apd_hap1	2788645	2788646	rs3134900	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	MICB	rs3134900-G	0.14	3E-101	(MHC class I polypeptide-related sequence B, MICB.5102.55.3)	0.71	[0.65-0.77] unit decrease	Affymetrix [10572788] (imputed)	N
606	chr6_apd_hap1	2789508	2789509	rs41293883	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Eczema	7,884 European ancestry cases, 239,773 European ancestry controls	21,000 cases, 96,000 controls	6p21.33	HLA-DQB1	rs41293883-?	0.95847	2E-14		1.4541224	[1.33-1.6]	Affymetrix [15688218] (imputed)	N
606	chr6_apd_hap1	2789744	2789745	rs41273040	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	6p21.33	MICB	rs41273040-G	0.976386	4E-18		0.0571663	[0.044-0.07] unit decrease	Affymetrix [NR] (imputed)	N
606	chr6_apd_hap1	2789744	2789745	rs41273040	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.33	NR	rs41273040-?	NR	6E-9				Affymetrix [~ 8270000] (imputed)	N
606	chr6_apd_hap1	2789815	2789816	rs3131638	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	6p21.33	NR	rs3131638-G	0.7739	8E-10		1.0449321	[1.03-1.06]	Affymetrix, Illumina [NR] (imputed)	N
606	chr6_apd_hap1	2790174	2790175	rs3132468	22001756	Khor CC	2011-10-16	Nat Genet	Genome-wide association study identifies susceptibility loci for dengue shock syndrome at MICB and PLCE1.	Dengue shock syndrome	2,008 Vietnamese ancestry child cases, 2,018 Vietnamese ancestry child controls	1,737 Vietnamese ancestry child cases, 2,934 Vietnamese ancestry child controls	6p21.33	MICB	rs3132468-?	0.13	4E-11		1.34	[1.23-1.46]	Illumina [481342]	N
606	chr6_apd_hap1	2790343	2790344	rs9380260	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MICB	rs9380260-A	NR	1E-12		0.0271773	[0.02-0.035] unit decrease	Affymetrix [323123] (imputed)	N
606	chr6_apd_hap1	2790985	2790986	rs62395355	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.33		rs62395355-C	0.821	9E-12				Affymetrix [10369434] (imputed)	N
606	chr6_apd_hap1	2790985	2790986	rs62395355	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MICB	rs62395355-A	NR	4E-12		0.0253688	[0.018-0.033] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_apd_hap1	2790985	2790986	rs62395355	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	MICB	rs62395355-A	NR	8E-12		0.0250776	[0.018-0.032] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_apd_hap1	2790985	2790986	rs62395355	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	MICB	rs62395355-A	NR	3E-10		0.0233476	[0.016-0.031] unit increase	Affymetrix [321169] (imputed)	N
606	chr6_apd_hap1	2791146	2791147	rs3130614	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	6p21.33	NR	rs3130614-A	0.119161214504899	1E-11		0.013812465	[0.0098-0.0178] unit decrease	NR [NR]	N
606	chr6_apd_hap1	2791146	2791147	rs3130614	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	6p21.33	NR	rs3130614-A	0.119161214504899	9E-11		0.017454144	[0.012-0.023] unit decrease	NR [NR]	N
606	chr6_apd_hap1	2791146	2791147	rs3130614	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	6p21.33	NR	rs3130614-A	0.119161214504899	1E-10		0.014875911	[0.01-0.019] unit decrease	NR [NR]	N
606	chr6_apd_hap1	2791146	2791147	rs3130614	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	6p21.33	NR	rs3130614-A	0.119161214504899	1E-11		0.011892368	[0.0085-0.0153] unit decrease	NR [NR]	N
606	chr6_apd_hap1	2791146	2791147	rs3130614	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	6p21.33	MICB	rs3130614-T	NR	3E-10		0.19759	[0.14-0.26] unit increase	Illumina [at least 950000] (imputed)	N
606	chr6_apd_hap1	2791146	2791147	rs3130614	26291516	Miller FW	2015-08-20	Genes Immun	Genome-wide association study identifies HLA 8.1 ancestral haplotype alleles as major genetic risk factors for myositis phenotypes.	Myositis	1,710 European ancestry cases, 4,724 European ancestry controls	NA	6p21.33	MICB	rs3130614-A	NR	4E-48		2.31	[NR]	Illumina [NR] (imputed)	N
606	chr6_apd_hap1	2791542	2791543	rs2844498	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MICB	rs2844498-T	NR	7E-13		0.0226459	[0.016-0.029] unit increase	Affymetrix [323858] (imputed)	N
606	chr6_apd_hap1	2791542	2791543	rs2844498	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	MICB	rs2844498-T	NR	8E-12		0.0215973	[0.015-0.028] unit increase	Affymetrix [127266] (imputed)	N
606	chr6_apd_hap1	2793639	2793640	rs9267431	33692975	Buda P	2021-02-22	Front Pediatr	Association Between rs12037447, rs146732504, rs151078858, rs55723436, and rs6094136 Polymorphisms and Kawasaki Disease in the Population of Polish Children.	Kawasaki disease	119 European ancestry cases, 6,071 European ancestry controls	NA	6p21.33	MICB	rs9267431-A	0.1194	2E-6		2.113	1.547-2.886	Illumina [164395]	N
606	chr6_apd_hap1	2793674	2793675	rs2246618	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MICB	rs2246618-T	NR	2E-11		0.0226591	[0.016-0.029] unit decrease	Affymetrix [323858] (imputed)	N
606	chr6_apd_hap1	2793674	2793675	rs2246618	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume (adjusted for hypertension)	46,055 European ancestry individuals, 2,469 African American individuals	NA	6p21.33	MICB	rs2246618-C	0.3118	7E-6		0.0286	[0.016-0.041] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
606	chr6_apd_hap1	2793674	2793675	rs2246618	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume (adjusted for hypertension)	46,055 European ancestry individuals	NA	6p21.33	MICB	rs2246618-C	0.3118	4E-6		0.029	[0.017-0.041] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
606	chr6_apd_hap1	2793674	2793675	rs2246618	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	48,454 European ancestry individuals	NA	6p21.33	MICB	rs2246618-C	0.3118	7E-7		0.0307	[0.019-0.043] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
606	chr6_apd_hap1	2793674	2793675	rs2246618	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	2,516 African American individuals, 48,454 European ancestry individuals	NA	6p21.33	MICB	rs2246618-C	0.3118	2E-6		0.03	[0.018-0.042] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
606	chr6_apd_hap1	2794333	2794334	rs3132463	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MICB	rs3132463-T	NR	5E-9		0.0213533	[0.014-0.028] unit increase	Affymetrix [323123] (imputed)	N
606	chr6_apd_hap1	2795356	2795357	rs3132461	28806749	Leo PJ	2017-08-14	PLoS Genet	Defining the genetic susceptibility to cervical neoplasia-A genome-wide association study.	Cervical cancer	2,866 European ancestry cases, 6,481 European ancestry controls	NA	6p21.33	MICB, MCCD1	rs3132461-G	NR	2E-13		1.358	[NR]	Illumina [10863230] (imputed)	N
606	chr6_apd_hap1	2795780	2795781	rs3132459	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MICB	rs3132459-C	NR	4E-8		0.0179194	[0.012-0.024] unit increase	Affymetrix [321016] (imputed)	N
606	chr6_apd_hap1	2795958	2795958	rs5875324	30787463	Escala-Garcia M	2019-02-21	Br J Cancer	Genome-wide association study of germline variants and breast cancer-specific mortality.	Breast cancer specific mortality in breast cancer	7,697 European ancestry cases, 88,964 European ancestry controls	NA	6p21.33	NR	rs5875324-?	NR	2E-6		0.8744475	[0.83-0.92]	Affymetrix, Illumina [~ 10400000] (imputed)	N
606	chr6_apd_hap1	2795987	2795988	rs2516399	21738478	Okada Y	2011-06-30	PLoS Genet	Identification of nine novel loci associated with white blood cell subtypes in a Japanese population.	White blood cell types	8,794 Japanese ancestry individuals	5,998 Japanese ancestry individuals	6p21.33	MHC	rs2516399-A	0.81	2E-12	(eosinophil count)	0.105	[0.08-0.14] unit increase	Illumina [2178645] (imputed)	N
606	chr6_apd_hap1	2797824	2797825	rs2844495	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG16N22.5	rs2844495-G	NR	2E-18		0.0261655	[0.02-0.032] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_apd_hap1	2797824	2797825	rs2844495	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG16N22.5	rs2844495-G	NR	2E-18		0.0261197	[0.02-0.032] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_apd_hap1	2797824	2797825	rs2844495	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG16N22.5	rs2844495-G	NR	1E-10		0.0210221	[0.015-0.027] unit decrease	Affymetrix [323123] (imputed)	N
606	chr6_apd_hap1	2797824	2797825	rs2844495	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG16N22.5	rs2844495-G	NR	3E-16		0.024738	[0.019-0.031] unit increase	Affymetrix [321169] (imputed)	N
606	chr6_apd_hap1	2797894	2797895	rs62397979	31320639	Hillary RF	2019-07-18	Nat Commun	Genome and epigenome wide studies of neurological protein biomarkers in the Lothian Birth Cohort 1936.	Neurological blood protein biomarker levels	750 European ancestry individuals	NA	6p21.33	XXbac-BPG16N22.5	rs62397979-G	0.0469	1E-26	(Alpha-2-MRAP)	1.36939	[1.12-1.62] unit increase	Illumina [8683751] (imputed)	N
606	chr6_apd_hap1	2798388	2798389	rs17200698	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	Y_RNA, MICB, PPIAP9, XXbac-BPG16N22.5, RPL15P4, MCCD1, ATP6V1G2, ATP6V1G2-DDX39B, NFKBIL1, LST1, NCR3	rs17200698-T	0.0361809	1E-11	(EA, MHC class I polypeptide-related sequence A)	0.813	[0.58-1.04] unit increase	Affymetrix [509946]	N
606	chr6_apd_hap1	2799205	2799206	rs2395045	28031287	Sasayama D	2016-11-26	Hum Mol Genet	Genome-wide quantitative trait loci mapping of the human cerebrospinal fluid proteome.	Cerebrospinal fluid biomarker levels	133 Japanese ancestry individuals.	NA	6p21.33	NR	rs2395045-?	NR	6E-9	(MHC class I polypeptide-related sequence B)			Illumina [514227]	N
606	chr6_apd_hap1	2799371	2799372	rs3131631	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cervical cancer	6,563 European ancestry cases, 410,350 European ancestry controls	NA	6p21.33		rs3131631-G	NR	5E-10		1.1332	NR	Affymetrix [7846216] (imputed)	N
606	chr6_apd_hap1	2799789	2799790	rs2516491	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG16N22.5	rs2516491-C	NR	1E-8		0.0197328	[0.013-0.027] unit decrease	Affymetrix [323858] (imputed)	N
606	chr6_apd_hap1	2800042	2800043	rs3131630	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG16N22.5	rs3131630-G	NR	1E-9		0.0197999	[0.013-0.026] unit decrease	Affymetrix [319769] (imputed)	N
606	chr6_apd_hap1	2800042	2800043	rs3131630	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG16N22.5	rs3131630-G	NR	3E-9		0.019409	[0.013-0.026] unit decrease	Affymetrix [319769] (imputed)	N
606	chr6_apd_hap1	2801093	2801094	rs149066340	30111768	Yao C	2018-08-15	Nat Commun	Genome-wide mapping of plasma protein QTLs identifies putatively causal genes and pathways for cardiovascular disease.	Blood protein levels	6861 European ancestry individuals	4298 European ancestry individuals	6p21.33		rs149066340-C	0.979	1E-36	(C2)	0.92	unit increase	Affymetrix, Illumina [8509364] (imputed)	N
606	chr6_apd_hap1	2802142	2802143	rs34451538	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs34451538-G	0.971	6E-20				Affymetrix [10369434] (imputed)	N
606	chr6_apd_hap1	2802142	2802143	rs34451538	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.33	PPIAP9	rs34451538-A	0.028767	2E-9		0.044486254	[0.03-0.059] unit decrease	Affymetrix [93095623] (imputed)	N
606	chr6_apd_hap1	2802642	2802643	rs3132455	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large HDL	115,082 European ancestry individuals	NA	6p21.33		rs3132455-G	0.653225	3E-10		0.0260764	[0.018-0.034] unit increase	NR [11722792] (imputed)	N
606	chr6_apd_hap1	2804332	2804333	rs3132454	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PPIAP9	rs3132454-G	NR	2E-8		0.0168062	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_apd_hap1	2804332	2804333	rs3132454	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PPIAP9	rs3132454-G	NR	4E-12		0.0205728	[0.015-0.026] unit decrease	Affymetrix [321016] (imputed)	N
606	chr6_apd_hap1	2804332	2804333	rs3132454	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	PPIAP9	rs3132454-G	NR	2E-8		0.0183183	[0.012-0.025] unit decrease	Affymetrix [323123] (imputed)	N
606	chr6_apd_hap1	2805819	2805820	rs3093992	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	PPIAP9	rs3093992-C	NR	3E-8		0.0191109	[0.012-0.026] unit increase	Affymetrix [323123] (imputed)	N
606	chr6_apd_hap1	2806704	2806705	rs114060326	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)(bidirectional)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.33		rs114060326-G	NR	3E-10				Affymetrix [7846216] (imputed)	N
606	chr6_apd_hap1	2807141	2807142	rs3093988	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	RPL15P4	rs3093988-A	NR	8E-12		0.0266126	[0.019-0.034] unit increase	Affymetrix [323123] (imputed)	N
606	chr6_apd_hap1	2807141	2807142	rs3093988	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	316,772 European ancestry male individuals	NA	6p21.33	NR	rs3093988-A	0.1856	8E-20		0.0203	[0.016-0.025] unit decrease	NR [~ 27400000] (imputed)	N
606	chr6_apd_hap1	2810306	2810307	rs2734580	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	RPL15P4	rs2734580-T	NR	8E-16		0.0360498	[0.027-0.045] unit decrease	Affymetrix [323123] (imputed)	N
606	chr6_apd_hap1	2811256	2811257	rs2516482	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.33	MCCD1	rs2516482-G	0.195446	1E-15		0.038059197	[0.029-0.047] unit increase	Affymetrix [93095623] (imputed)	N
606	chr6_apd_hap1	2811612	2811613	rs3093983	33649182	Penova M	2021-03-01	Proc Natl Acad Sci U S A	Genome wide association study of HTLV-1-associated myelopathy/tropical spastic paraparesis in the Japanese population.	HTLV-1 associated myelopathy	731 Japanese ancestry cases, 846 Japanese ancestry controls	NA	6p21.33		rs3093983-G	0.08	4E-7		1.86	[1.47-2.37]	Illumina [126394]	N
606	chr6_apd_hap1	2814290	2814291	rs3853601	22197932	Paternoster L	2011-12-25	Nat Genet	Meta-analysis of genome-wide association studies identifies three new risk loci for atopic dermatitis.	Atopic dermatitis	5,606 European ancestry cases, 20,565 European ancestry controls	5,419 European ancestry cases, 19,833 European ancestry controls	6p21.33	BAT1	rs3853601-G	0.12	2E-6		1.13	[1.08-1.19]	Affymetrix, Illumina [~ 2500000] (imputed)	N
606	chr6_apd_hap1	2818881	2818882	rs114751021	33841421	Li J	2021-03-25	Front Immunol	Variants at the MHC Region Associate With Susceptibility to <i>Clostridioides difficile</i> Infection: A Genome-Wide Association Study Using Comprehensive Electronic Health Records.	Clostridioides difficle infection in antibiotics-users	587 European ancestry cases, 3,166 European ancestry controls	NA	6p21.33	SNORD117	rs114751021-G	0.024	5E-8		2.41	[1.84-3.09]	Illumina [64973696] (imputed)	N
606	chr6_apd_hap1	2820167	2820168	rs2734583	21912425	Tohkin M	2011-09-13	Pharmacogenomics J	A whole-genome association study of major determinants for allopurinol-related Stevens-Johnson syndrome and toxic epidermal necrolysis in Japanese patients.	Stevens-Johnson syndrome and toxic epidermal necrolysis (SJS-TEN)	14 Japanese ancestry cases, 991 Japanese ancestry controls	NA	6p21.33	PSORS1C1, PSORS1C3, BAT1, HLA-C, MICC, PPIAP9, POLR2LP, CCHCR1, TCF19, HLA-B*5801, HCP5, POU5F1	rs2734583-?	0.0055	2E-8		66.8	[19.8-225.0]	Illumina [890321]	N
606	chr6_apd_hap1	2820477	2820478	rs9267485	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	6p21.33	DDX39B	rs9267485-G	NR	2E-17		0.0531442	[0.041-0.065] unit decrease	Illumina [13520550] (imputed)	N
606	chr6_apd_hap1	2821378	2821379	rs2071596	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	6p21.33	DDX39B	rs2071596-A	0.163229	1E-42		0.04289182	[0.037-0.049] unit increase	Affymetrix [93095623] (imputed)	N
606	chr6_apd_hap1	2821378	2821379	rs2071596	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6p21.33	DDX39B	rs2071596-A	0.163228	9E-50		0.046432465	[0.04-0.053] unit increase	Affymetrix [93095623] (imputed)	N
606	chr6_apd_hap1	2821378	2821379	rs2071596	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6p21.33	DDX39B	rs2071596-A	0.163185	2E-27		0.03458288	[0.028-0.041] unit decrease	Affymetrix [93095623] (imputed)	N
606	chr6_apd_hap1	2821378	2821379	rs2071596	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6p21.33	DDX39B	rs2071596-A	0.163195	5E-24		0.030947343	[0.025-0.037] unit increase	Affymetrix [93095623] (imputed)	N
606	chr6_apd_hap1	2858544	2858545	rs1800610	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NCR3	5,364 Icelandic ancestry individuals	NA	6p21.33		rs1800610-A	0.05852	5E-49		0.548141	[0.48-0.62] unit decrease	Illumina [7506463] (imputed)	N
606	chr6_apd_hap1	2858906	2858907	rs3093662	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	6p21.33	NR	rs3093662-A	0.92	2E-10		0.0223	[0.015-0.029] unit increase	NR [NR]	N
606	chr6_apd_hap1	2859359	2859360	rs3093664	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MICB	5,339 Icelandic ancestry individuals	NA	6p21.33		rs3093664-G	0.08964	1E-117		0.671593	[0.61-0.73] unit increase	Illumina [7506463] (imputed)	N
606	chr6_apd_hap1	2859359	2859360	rs3093664	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p21.33	TNF	rs3093664-G	0.048	3E-7		0.13	[0.081-0.179] unit increase	Affymetrix, Illumina [7374092] (imputed)	N
606	chr6_apd_hap1	2859359	2859360	rs3093664	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs3093664-A	0.916875	8E-64	(MICB, 9328_55_3)	0.73897094	[0.66-0.82] unit decrease	Illumina [> 1000000] (imputed)	N
606	chr6_apd_hap1	2859359	2859360	rs3093664	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs3093664-A	0.916875	8E-11	(C4A C4B, 2182_54_1)	0.29393905	[0.21-0.38] unit increase	Illumina [> 1000000] (imputed)	N
606	chr6_apd_hap1	2859359	2859360	rs3093664	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs3093664-A	0.916875	3E-14	(IL36A, 14150_7_3)	0.34182286	[0.25-0.43] unit increase	Illumina [> 1000000] (imputed)	N
606	chr6_apd_hap1	2859359	2859360	rs3093664	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs3093664-A	0.916875	1E-111	(MICB, 5102_55_3)	0.9721669	[0.89-1.05] unit decrease	Illumina [> 1000000] (imputed)	N
606	chr6_apd_hap1	2859359	2859360	rs3093664	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs3093664-A	0.916875	1E-10	(USP25, 9215_117_3)	0.28181827	[0.2-0.37] unit decrease	Illumina [> 1000000] (imputed)	N
606	chr6_apd_hap1	2861567	2861568	rs1800628	27749845	Lesseur C	2016-10-17	Nat Genet	Genome-wide association analyses identify new susceptibility loci for oral cavity and pharyngeal cancer.	Oral cavity cancer	2,717 European ancestry cases, 273 cases, 5,984 European ancestry controls, 601 controls	NA	6p21.33	MICB, AIF1	rs1800628-A	0.07	7E-8		1.3962	NR	Illumina [7574753] (imputed)	N
606	chr6_apd_hap1	2862231	2862232	rs769178	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs769178-G	0.94078125	8E-31	(NCR3, 3003_29_2)	0.5867702	[0.49-0.69] unit increase	Illumina [> 1000000] (imputed)	N
606	chr6_apd_hap1	2862231	2862232	rs769178	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs769178-G	0.94078125	4E-26	(ISG15, 14148_2_3)	0.54343	[0.44-0.64] unit increase	Illumina [> 1000000] (imputed)	N
606	chr6_apd_hap1	2862231	2862232	rs769178	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs769178-G	0.94078125	3E-10	(TNXB, 5698_60_3)	0.32249722	[0.22-0.42] unit increase	Illumina [> 1000000] (imputed)	N
606	chr6_apd_hap1	2862231	2862232	rs769178	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs769178-G	0.94078125	1E-40	(MICA, 2730_58_2)	0.67921454	[0.58-0.78] unit increase	Illumina [> 1000000] (imputed)	N
606	chr6_apd_hap1	2862231	2862232	rs769178	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs769178-G	0.94078125	1E-33	(C2, 3186_2_2)	0.63008285	[0.53-0.73] unit increase	Illumina [> 1000000] (imputed)	N
606	chr6_apd_hap1	2862328	2862329	rs769177	30226566	Yamada Y	2018-09-04	Int J Mol Med	Identification of 13 novel susceptibility loci for early-onset myocardial infarction, hypertension, or chronic kidney disease.	Hypertension	3,444 Japanese ancestry cases, 4,636 Japanese ancestry controls	NA	6p21.33	Intergenic	rs769177-G	0.8280000000000001	1E-6		1.2345679		Illumina [31276]	N
606	chr6_apd_hap1	2867567	2867568	rs7758790	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.33		rs7758790-T	0.774	1E-27				Affymetrix [10369434] (imputed)	N
606	chr6_apd_hap1	2869847	2869848	rs2256965	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6p21.33		rs2256965-A	0.4188	2E-13		0.0106	[0.0079-0.0133] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
606	chr6_apd_hap1	2870109	2870110	rs2256974	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.33	NR	rs2256974-A	0.375	2E-25		0.842	[0.81-0.88]	Illumina [11270530] (imputed)	N
606	chr6_apd_hap1	2870109	2870110	rs2256974	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Tumor necrosis factor receptor 2 levels	21,758 European ancestry individuals	9,173 individuals	6p21.33		rs2256974-A	0.18	3E-10		0.0632	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
606	chr6_apd_hap1	2870109	2870110	rs2256974	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p21.33	LST1	rs2256974-A	0.173581	3E-16		0.026160087	[0.02-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
606	chr6_apd_hap1	2870109	2870110	rs2256974	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	6p21.33	LST1	rs2256974-A	0.17355	5E-37		0.039224777	[0.033-0.045] unit increase	Affymetrix [93095623] (imputed)	N
606	chr6_apd_hap1	2870197	2870198	rs200801362	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	6p21.33	LST1	rs200801362-T	0.839907	4E-13		0.0188461	[0.014-0.024] unit decrease	Affymetrix [12370749]	N
606	chr6_apd_hap1	2870874	2870874	rs28986170	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FEV1/FVC)	48,943 European ancestry individuals	57,176 European ancestry individuals, 38,199 individuals.	6p21.33	LST1	rs28986170-?	0.752	2E-10	(conditioned on rs2070600, rs9272528)	0.063	[0.043-0.083] unit increase	Affymetrix [27624732] (imputed)	N
606	chr6_apd_hap1	2871298	2871299	rs1052248	33768542	Liu Y	2021-03-26	Clin Pharmacol Ther	Class II HLA Variants Associate with Risk of Pegaspargase Hypersensitivity.	Asparaginase hypersensitivity in acute lymphoblastic leukemia	798 Native American individuals	NA	6p21.33	NR	rs1052248-A	NR	4E-7		2.31	[NR]	Illumina [NR] (imputed)	N
606	chr6_apd_hap1	2871298	2871299	rs1052248	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	6p21.33	Intergenic	rs1052248-A	0.2609	2E-8	(MTAG)	0.0146	[0.0095-0.0197] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
606	chr6_apd_hap1	2871298	2871299	rs1052248	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p21.33	LST1	rs1052248-A	0.28	3E-17		1.05	[1.04-1.06]	Illumina [at least 560000] (imputed)	N
606	chr6_apd_hap1	2871426	2871427	rs986475	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NCR3	rs986475-G	0.071	1E-31	(Natural cytotoxicity triggering receptor 3, NCR3.3003.29.2)	0.55	[0.45-0.65] unit decrease	Affymetrix [10572788] (imputed)	N
606	chr6_apd_hap1	2872208	2872209	rs11575841	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	6p21.33	NR	rs11575841-?	NR	5E-20		9.163	NR z score decrease	Illumina [at least 830937] (imputed)	N
606	chr6_apd_hap1	2872508	2872509	rs11575839	23028341	Yang X	2012-09-13	PLoS Genet	Genome-wide association study for serum complement C3 and C4 levels in healthy Chinese subjects.	Complement C3 and C4 levels	1,999 Han Chinese ancestry male individuals	1,496 Han Chinese ancestry male individuals	6p21.33	HLA-C	rs11575839-A	0.05	1E-54	(Serum level of C4)	0.23	[0.21-0.25] g/L decrease	Illumina [1940245] (imputed)	N
606	chr6_apd_hap1	2872892	2872893	rs148533164	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.33		rs148533164-G	0.952	3E-15				Affymetrix [10369434] (imputed)	N
606	chr6_apd_hap1	2872981	2872982	rs28732145	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p21.33	NR	rs28732145-?	NR	2E-11		0.2045	[0.15-0.26] unit increase	Illumina [at least 560000] (imputed)	N
606	chr6_apd_hap1	2875387	2875388	rs11575837	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6p21.33		rs11575837-?	NR	5E-8		1.20533	[1.14-1.27]	NR [685523]	N
606	chr6_apd_hap1	2875387	2875388	rs11575837	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.33	NR	rs11575837-T	0.012	8E-13		0.58141	[0.42-0.74] unit increase	Affymetrix [up to 8900000] (imputed)	N
606	chr6_apd_hap1	2875821	2875821	rs573608874	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	NCR3	rs573608874-T	NR	2E-8		0.0184452	[0.012-0.025] unit increase	Affymetrix [323123] (imputed)	N
606	chr6_apd_hap1	2876070	2876071	rs28732146	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	NCR3	rs28732146-A	NR	1E-11		0.0239586	[0.017-0.031] unit decrease	Affymetrix [321016] (imputed)	N
606	chr6_apd_hap1	2876070	2876071	rs28732146	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	NCR3	rs28732146-A	NR	2E-17		0.0326707	[0.025-0.04] unit decrease	Affymetrix [323123] (imputed)	N
606	chr6_apd_hap1	2876232	2876233	rs9357135	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	6p21.33		rs9357135-T	0.046397421	1E-19		0.60996497	[0.48-0.74] unit increase	Illumina [13429980] (imputed)	N
606	chr6_apd_hap1	2876867	2876868	rs2857599	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	NCR3	rs2857599-A	NR	1E-19		0.0348769	[0.027-0.042] unit decrease	Affymetrix [321016] (imputed)	N
606	chr6_apd_hap1	2876867	2876868	rs2857599	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	6p21.33	Intergenic	rs2857599-G	NR	3E-8		0.0262207	[0.017-0.036] unit increase	Illumina [13519193] (imputed)	N
606	chr6_apd_hap1	2876882	2876883	rs536378929	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	6p21.33	NCR3	rs536378929-T	0.9236	9E-26		0.0494	[0.04-0.059] unit decrease	Affymetrix [18391927] (imputed)	N
606	chr6_apd_hap1	2877332	2877333	rs2515920	30226566	Yamada Y	2018-09-04	Int J Mol Med	Identification of 13 novel susceptibility loci for early-onset myocardial infarction, hypertension, or chronic kidney disease.	Hypertension	3,444 Japanese ancestry cases, 4,636 Japanese ancestry controls	NA	6p21.33	NCR3	rs2515920-T	0.827	5E-7		1.2345679		Illumina [31276]	N
606	chr6_apd_hap1	2877481	2877482	rs3130632	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	NCR3	rs3130632-T	NR	1E-10		0.022096	[0.015-0.029] unit decrease	Affymetrix [319769] (imputed)	N
606	chr6_apd_hap1	2877481	2877482	rs3130632	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	NCR3	rs3130632-T	NR	9E-10		0.0210507	[0.014-0.028] unit decrease	Affymetrix [319769] (imputed)	N
606	chr6_apd_hap1	2877481	2877482	rs3130632	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	NCR3	rs3130632-T	NR	7E-11		0.0226077	[0.016-0.029] unit decrease	Affymetrix [321169] (imputed)	N
606	chr6_apd_hap1	2877484	2877485	rs34744948	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.33	NR	rs34744948-?	NR	4E-11				Affymetrix [~ 8270000] (imputed)	N
606	chr6_apd_hap1	2877945	2877946	rs2857598	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	NCR3	rs2857598-A	NR	4E-15		0.0338966	[0.025-0.042] unit increase	Affymetrix [323123] (imputed)	N
606	chr6_apd_hap1	2877945	2877946	rs2857598	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.33	Intergenic	rs2857598-C	NR	7E-8	(women)	0.0362414	[0.023-0.049] unit decrease	Illumina [13520550] (imputed)	N
606	chr6_apd_hap1	2877945	2877946	rs2857598	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.33	Intergenic	rs2857598-C	NR	5E-11		0.0308295	[0.022-0.04] unit decrease	Illumina [13520550] (imputed)	N
606	chr6_apd_hap1	2877945	2877946	rs2857598	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	6p21.33	Intergenic	rs2857598-C	NR	9E-20		0.0496215	[0.039-0.06] unit decrease	Illumina [13520550] (imputed)	N
606	chr6_apd_hap1	2877957	2877958	rs3132452	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	6p21.33	NR	rs3132452-?	NR	2E-7		0.095	[0.059-0.131] unit increase	Illumina [at least 560000] (imputed)	N
606	chr6_apd_hap1	2878884	2878885	rs2515919	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	NCR3	rs2515919-G	NR	5E-12		0.020055	[0.014-0.026] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_apd_hap1	2878884	2878885	rs2515919	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	NCR3	rs2515919-G	NR	2E-8		0.0182636	[0.012-0.025] unit increase	Affymetrix [323858] (imputed)	N
606	chr6_apd_hap1	2878884	2878885	rs2515919	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	NCR3	rs2515919-G	NR	7E-11		0.0189369	[0.013-0.025] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_apd_hap1	2878884	2878885	rs2515919	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	NCR3	rs2515919-G	NR	2E-10		0.0184288	[0.013-0.024] unit decrease	Affymetrix [321016] (imputed)	N
606	chr6_apd_hap1	2878884	2878885	rs2515919	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	NCR3	rs2515919-G	NR	1E-28		0.0351117	[0.029-0.041] unit decrease	Affymetrix [323123] (imputed)	N
606	chr6_apd_hap1	2878884	2878885	rs2515919	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	NCR3	rs2515919-G	NR	8E-13		0.0210432	[0.015-0.027] unit increase	Affymetrix [321169] (imputed)	N
606	chr6_apd_hap1	2878884	2878885	rs2515919	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	6p21.33	Intergenic	rs2515919-A	0.6258	1E-10	(MTAG)	0.0119	[0.0082-0.0156] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
606	chr6_apd_hap1	2878884	2878885	rs2515919	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	6p21.33	Intergenic	rs2515919-A	0.6255	3E-16	(MTAG)	0.0139	[0.011-0.017] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
606	chr6_apd_hap1	2878884	2878885	rs2515919	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6p21.33	Intergenic	rs2515919-A	0.63	3E-16	(MTAG)	0.0111	[0.0084-0.0138] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
606	chr6_apd_hap1	2879538	2879539	rs2844480	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p21.33	NR	rs2844480-?	NR	2E-18		0.0887	[0.069-0.108] unit increase	Illumina [at least 560000] (imputed)	N
606	chr6_apd_hap1	2880027	2880028	rs150379130	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	NCR3	rs150379130-T	NR	4E-9		0.0270941	[0.018-0.036] unit decrease	Affymetrix [323123] (imputed)	N
606	chr6_apd_hap1	2880254	2880255	rs111728624	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	NCR3	rs111728624-C	NR	3E-11		0.0281508	[0.02-0.036] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_apd_hap1	2880254	2880255	rs111728624	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.33	NCR3	rs111728624-C	NR	2E-8		0.0241088	[0.016-0.032] unit increase	Affymetrix [321114] (imputed)	N
606	chr6_apd_hap1	2880254	2880255	rs111728624	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	NCR3	rs111728624-C	NR	1E-11		0.0289838	[0.021-0.037] unit increase	Affymetrix [321169] (imputed)	N
606	chr6_apd_hap1	2880885	2880886	rs3130631	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p21.33	NR	rs3130631-?	NR	2E-9		0.0861	[0.058-0.115] unit decrease	Illumina [at least 560000] (imputed)	N
606	chr6_apd_hap1	2881557	2881558	rs17200816	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	NCR3	rs17200816-T	NR	2E-11		0.0283425	[0.02-0.037] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_apd_hap1	2882139	2882140	rs2857596	32752121	Nedoszytko B	2020-07-31	Int J Mol Sci	Results from a Genome-Wide Association Study (GWAS) in Mastocytosis Reveal New Gene Polymorphisms Associated with WHO Subgroups.	Systemic mastocytosis	93 European ancestry cases, 5,606 European ancestry controls	NA	6p21.33	NRC3	rs2857596-C	0.2394	2E-10		2.582	[2.28-2.88]	Illumina [281811]	N
606	chr6_apd_hap1	2883186	2883187	rs2857595	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	NCR3	rs2857595-A	NR	3E-11		0.0254138	[0.018-0.033] unit decrease	Affymetrix [127266] (imputed)	N
606	chr6_apd_hap1	2883186	2883187	rs2857595	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FEV1/FVC)	48,943 European ancestry individuals	57,176 European ancestry individuals, 38,199 individuals.	6p21.33	NCR3	rs2857595-A	0.213	4E-9		0.048	[0.032-0.064] unit decrease	Affymetrix [27624732] (imputed)	N
606	chr6_apd_hap1	2883186	2883187	rs2857595	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FEV1)	48,943 European ancestry individuals.	57,176 European ancestry individuals, 38,199 individuals.	6p21.33	NCR3	rs2857595-A	0.21	2E-6		0.039	[0.023-0.055] unit decrease	Affymetrix [up to 27624732] (imputed)	N
606	chr6_apd_hap1	2883186	2883187	rs2857595	25936594	Tomer Y	2015-04-27	J Autoimmun	Genome wide identification of new genes and pathways in patients with both autoimmune thyroiditis and type 1 diabetes.	Type 1 diabetes and autoimmune thyroid diseases	346 European ancestry cases, 727 European ancestry controls	185 European ancestry cases, 340 European ancestry controls	6p21.33	NFKBIL1, LTA, NCR3	rs2857595-T	NR	2E-23		2.3765		Illumina [514008]	N
606	chr6_apd_hap1	2883186	2883187	rs2857595	25194280	Wei Q	2014-09-07	Nat Genet	Genome-wide association study identifies three susceptibility loci for laryngeal squamous cell carcinoma in the Chinese population.	Laryngeal squamous cell carcinoma	993 Chinese ancestry cases, 1,995 Chinese ancestry controls	2,398 Chinese ancestry cases, 2,804 Chinese ancestry controls	6p21.33	AIF1, HLA	rs2857595-?	0.50	2E-15		1.3	[1.22-1.39]	Affymetrix [662108]	N
606	chr6_apd_hap1	2883186	2883187	rs2857595	23284291	Hancock DB	2012-12-20	PLoS Genet	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (smoking interaction)	50,047 European ancestry individuals	NA	6p21.33	NCR3	rs2857595-?	NR	8E-8	(FEV1/FVC, Ever-smoking)			NR [~ 2500000] (imputed)	N
606	chr6_apd_hap1	2883186	2883187	rs2857595	21946350	Soler Artigas M	2011-09-25	Nat Genet	Genome-wide association and large-scale follow up identifies 16 new loci influencing lung function.	Pulmonary function	48,201 European ancestry individuals	46,411 European ancestry individuals	6p21.33	NCR3	rs2857595-G	0.81	2E-10	(FEV1/FVC)	0.037	[0.025-0.049] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
606	chr6_apd_hap1	2883186	2883187	rs2857595	21946350	Soler Artigas M	2011-09-25	Nat Genet	Genome-wide association and large-scale follow up identifies 16 new loci influencing lung function.	Pulmonary function	48,201 European ancestry individuals	46,411 European ancestry individuals	6p21.33	NCR3	rs2857595-G	0.81	1E-6	(FEV1)	0.025	[0.02-0.04] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
607	chr6_apd_hap1	2884237	2884238	rs17207190	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Strep throat	52,487 European ancestry cases, 22,017 European ancestry controls	NA	6p21.33	NR	rs17207190-?	NR	8E-8		0.0766	[0.049-0.105] unit decrease	Illumina [at least 560000] (imputed)	N
607	chr6_apd_hap1	2884421	2884422	rs2507960	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Diastolic blood pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	6p21.33	HLA	rs2507960-A	0.139916952	3E-6		0.1878	[0.11-0.27] unit increase	Affymetrix [~ 9800000] (imputed)	N
607	chr6_apd_hap1	2884618	2884619	rs9267516	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	6p21.33		rs9267516-T	0.364098	1E-16		0.0286201	[0.024-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
607	chr6_apd_hap1	2887050	2887051	rs2736186	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	Intergenic	rs2736186-A	0.03768844	1E-29	(EA, Neutrophil collagenase)	1.233	[1.03-1.44] unit increase	Affymetrix [509946]	N
607	chr6_apd_hap1	2887361	2887362	rs2857594	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	Triglyceride levels	291,107 British ancestry individuals	NA	6p21.33	TBC1D22B	rs2857594-C	0.148615	4E-11		0.01965	[0.014-0.025] unit decrease	Affymetrix [9463307] (imputed)	N
607	chr6_apd_hap1	2887361	2887362	rs2857594	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	Systolic blood pressure	291,107 British ancestry individuals	NA	6p21.33	TBC1D22B	rs2857594-C	0.148615	1E-7		0.36076	[0.23-0.49] unit decrease	Affymetrix [9463307] (imputed)	N
607	chr6_apd_hap1	2887381	2887382	rs41291790	35232999	Garcia-Etxebarria K	2022-03-01	Sci Rep	Local genetic variation of inflammatory bowel disease in Basque population and its effect in risk prediction.	Ulcerative colitis	208 European ancestry cases, 935 European ancestry controls	NA	6p21.33		rs41291790-A	0.022	3E-8		5.3		Illumina [5409651] (imputed)	N
607	chr6_apd_hap1	2887381	2887382	rs41291790	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	334,944 European ancestry, NR ancestry individuals	NA	6p21.33		rs41291790-?	NR	5E-8				Affymetrix [NR] (imputed)	N
607	chr6_apd_hap1	2887673	2887674	rs2844479	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	UQCRHP1	rs2844479-C	NR	4E-14		0.0227975	[0.017-0.029] unit increase	Affymetrix [319769] (imputed)	N
607	chr6_apd_hap1	2887673	2887674	rs2844479	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	UQCRHP1	rs2844479-C	NR	6E-13		0.02173	[0.016-0.028] unit increase	Affymetrix [319769] (imputed)	N
607	chr6_apd_hap1	2887673	2887674	rs2844479	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	UQCRHP1	rs2844479-C	NR	8E-11		0.0195735	[0.014-0.025] unit decrease	Affymetrix [321016] (imputed)	N
607	chr6_apd_hap1	2887673	2887674	rs2844479	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	UQCRHP1	rs2844479-C	NR	1E-14		0.0236304	[0.018-0.03] unit increase	Affymetrix [321169] (imputed)	N
607	chr6_apd_hap1	2887673	2887674	rs2844479	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	6p21.33		rs2844479-C	0.326375	4E-26		0.027727867	[0.023-0.033] unit increase	Affymetrix [93095623] (imputed)	N
607	chr6_apd_hap1	2887673	2887674	rs2844479	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	6p21.33	AIF1	rs2844479-A	0.66	3E-10		1.14	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
607	chr6_apd_hap1	2887673	2887674	rs2844479	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs2844479-C	0.393698650943396	4E-6	(IGP60)	0.151	[0.087-0.215] unit increase	Illumina [~ 2500000] (imputed)	N
607	chr6_apd_hap1	2887673	2887674	rs2844479	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs2844479-C	0.393631380483438	4E-6	(IGP6)	0.1506	[0.086-0.215] unit decrease	Illumina [~ 2500000] (imputed)	N
607	chr6_apd_hap1	2887673	2887674	rs2844479	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs2844479-C	0.393516127507802	9E-6	(IGP61)	0.1445	[0.081-0.208] unit increase	Illumina [~ 2500000] (imputed)	N
607	chr6_apd_hap1	2887673	2887674	rs2844479	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs2844479-C	0.393054780607685	7E-6	(IGP58)	0.1476	[0.083-0.212] unit increase	Illumina [~ 2500000] (imputed)	N
607	chr6_apd_hap1	2887673	2887674	rs2844479	19079260	Thorleifsson G	2008-12-14	Nat Genet	Genome-wide association yields new sequence variants at seven loci that associate with measures of obesity.	Weight	72,598 European ancestry individuals, 1,160 African American individuals	Up to 11,036 European ancestry individuals, 32,615 individuals	6p21.33	AIF1, NCR3	rs2844479-T	0.68	2E-8		3.58	[2.33-4.83] percentage SD increase	Illumina [305846]	N
607	chr6_apd_hap1	2887827	2887828	rs9267517	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	IgD on unswitched memory B cell	3,636 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs9267517-A	0.2447	1E-13		0.2671	[0.2-0.34] unit decrease	Illumina [18230756] (imputed)	N
607	chr6_apd_hap1	2888294	2888295	rs144360625	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	6p21.33		rs144360625-C	0.125812	9E-19		0.029980848	[0.023-0.037] unit increase	Affymetrix [93095623] (imputed)	N
607	chr6_apd_hap1	2888294	2888295	rs144360625	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	6p21.33	NR	rs144360625-?	NR	3E-11	(MIC-A)	0.57967	[0.41-0.75] unit decrease	Illumina [11901634] (imputed)	N
607	chr6_apd_hap1	2888874	2888874	rs144831544	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	UQCRHP1	rs144831544-AAATTAGC	NR	7E-14		0.026213	[0.019-0.033] unit increase	Affymetrix [319769] (imputed)	N
607	chr6_apd_hap1	2888874	2888874	rs144831544	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	UQCRHP1	rs144831544-AAATTAGC	NR	4E-13		0.0254281	[0.019-0.032] unit increase	Affymetrix [319769] (imputed)	N
607	chr6_apd_hap1	2888874	2888874	rs144831544	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	UQCRHP1	rs144831544-AAATTAGC	NR	9E-16		0.0284632	[0.022-0.035] unit increase	Affymetrix [321169] (imputed)	N
607	chr6_apd_hap1	2889264	2889265	rs28895016	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	6p21.33	NCR3, AIF1	rs28895016-C	0.91	9E-16		1.097	[1.07-1.12]	Affymetrix, Illumina [8307659] (imputed)	N
607	chr6_apd_hap1	2889639	2889640	rs28366149	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	UQCRHP1	rs28366149-A	NR	4E-9		0.0225023	[0.015-0.03] unit decrease	Affymetrix [323123] (imputed)	N
607	chr6_apd_hap1	2889812	2889813	rs28474889	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	6p21.33	UQCRHP1	rs28474889-T	0.200504	2E-19		0.025810601	[0.02-0.031] unit increase	Affymetrix [93095623] (imputed)	N
607	chr6_apd_hap1	2889812	2889813	rs28474889	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6p21.33	UQCRHP1	rs28474889-T	0.200511	2E-24		0.02926071	[0.024-0.035] unit increase	Affymetrix [93095623] (imputed)	N
607	chr6_apd_hap1	2889812	2889813	rs28474889	29773799	Horikoshi M	2018-05-17	Nat Commun	Elucidating the genetic architecture of reproductive ageing in the Japanese population.	Menopause (age at onset)	43,861 Japanese ancestry women	32,545 European ancestry women	6p21.33	MSH5 / HLA	rs28474889-C	0.73	5E-16	(japanese)	0.24	[0.18-0.3] year increase	Illumina [at least 532488] (imputed)	N
607	chr6_apd_hap1	2890015	2890016	rs9348876	22936669	Julia A	2012-08-30	Gut	A genome-wide association study on a southern European population identifies a new Crohn's disease susceptibility locus at RBX1-EP300.	Crohn's disease	1,277 European ancestry cases, 1,488 European ancestry controls	1,365 European ancestry cases, 1,396 European ancestry controls	6p21.33	AIF1	rs9348876-T	0.06	3E-6		1.41	[1.22-1.63]	Illumina [508934]	N
607	chr6_apd_hap1	2890364	2890365	rs28732148	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	6p21.33	AIF1	rs28732148-C	0.932302	2E-9		0.0218984	[0.015-0.029] unit decrease	NR [13737936] (imputed)	N
607	chr6_apd_hap1	2891838	2891839	rs3130060	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	UQCRHP1	rs3130060-T	NR	8E-10		0.0239184	[0.016-0.032] unit decrease	Affymetrix [323858] (imputed)	N
607	chr6_apd_hap1	2891838	2891839	rs3130060	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	UQCRHP1	rs3130060-T	NR	2E-8		0.0217476	[0.014-0.029] unit decrease	Affymetrix [127266] (imputed)	N
607	chr6_apd_hap1	2891838	2891839	rs3130060	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	UQCRHP1	rs3130060-T	NR	6E-9		0.0221795	[0.015-0.03] unit increase	Affymetrix [323123] (imputed)	N
607	chr6_apd_hap1	2892020	2892021	rs2857702	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	UQCRHP1	rs2857702-C	NR	7E-9		0.0219268	[0.015-0.029] unit decrease	Affymetrix [323123] (imputed)	N
608	chr6_apd_hap1	3037527	3037528	rs3130486	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (anilides)	83,218 European ancestry cases, 96,592 European ancestry controls	NA	6p21.33	MSH5	rs3130486-T	0.265164	1E-13		0.05492751	[0.04-0.069] unit decrease	Affymetrix [7288503] (imputed)	N
608	chr6_apd_hap1	3040035	3040036	rs3131378	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	6p21.33	MSH5-SAPCD1	rs3131378-G	0.098896646	3E-18		1.1810031	[1.137601617-1.226060343]	Illumina [10439017] (imputed)	N
608	chr6_apd_hap1	3041438	3041439	rs707939	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MSH5, MSH5-SAPCD1	rs707939-A	NR	4E-10		0.0204551	[0.014-0.027] unit decrease	Affymetrix [323123] (imputed)	N
608	chr6_apd_hap1	3041438	3041439	rs707939	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.33	ABHD16A, AIF1, APOM, BAG6, C2, C2-AS1, C4A, C4B, C4B_2, C6orf25, C6orf47, C6orf48, CFB, CLIC1, CSNK2B, CYP21A1P, CYP21A2, DDAH2, DXO, EHMT2, GPANK1, HSPA1A, HSPA1B, HSPA1L, LSM2, LY6G5B, LY6G5C, LY6G6C, LY6G6D, LY6G6E, LY6G6F, MIR1236, MIR4646, MIR6832, MSH5, MSH5-SAPCD1, NELFE, NEU1, PRRC2A, SAPCD1, SAPCD1-AS1, SKIV2L, SLC44A4, SNORA38, SNORD48, SNORD52, STK19, TNXA, TNXB, VARS, VWA7, ZBTB12	rs707939-A		4E-12		1.07	[1.05-1.09]	Affymetrix, Illumina [NR]	N
608	chr6_apd_hap1	3041600	3041601	rs17207524	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	6p21.33	MSH5	rs17207524-T	0.06447	3E-8		1.09	NR	Affymetrix [9154080] (imputed)	N
608	chr6_apd_hap1	3041600	3041601	rs17207524	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs17207524-G	0.96171875	3E-9	(TGM3, 4471_50_2)	0.3747752	[0.25-0.5] unit increase	Illumina [> 1000000] (imputed)	N
608	chr6_apd_hap1	3041600	3041601	rs17207524	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs17207524-G	0.96171875	1E-31	(G6B, 7065_1_4)	0.7349115	[0.61-0.86] unit increase	Illumina [> 1000000] (imputed)	N
608	chr6_apd_hap1	3041600	3041601	rs17207524	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs17207524-G	0.96171875	1E-14	(C4A C4B, 4481_34_2)	0.5052215	[0.38-0.63] unit decrease	Illumina [> 1000000] (imputed)	N
608	chr6_apd_hap1	3042647	3042648	rs3115672	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Squamous cell lung carcinoma	8,350 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	6p21.33	NR	rs3115672-T	NR	2E-8		1.28	[1.17-1.39]	NR [NR] (imputed)	N
608	chr6_apd_hap1	3042647	3042648	rs3115672	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Non-small cell lung cancer	27,120 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	6p21.33	NR	rs3115672-T	NR	4E-6		1.15	[1.08-1.22]	NR [NR] (imputed)	N
608	chr6_apd_hap1	3042647	3042648	rs3115672	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	6p21.33	NR	rs3115672-T	0.113634053654599	4E-15		0.014519162	[0.011-0.018] unit decrease	NR [NR]	N
608	chr6_apd_hap1	3042647	3042648	rs3115672	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	6p21.33	NR	rs3115672-T	0.113634053654599	6E-15		0.018733539	[0.014-0.023] unit decrease	NR [NR]	N
608	chr6_apd_hap1	3042647	3042648	rs3115672	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	6p21.33	NR	rs3115672-T	0.113634053654599	5E-14		0.015431175	[0.011-0.019] unit decrease	NR [NR]	N
608	chr6_apd_hap1	3042647	3042648	rs3115672	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	6p21.33	NR	rs3115672-T	0.113634053654599	2E-15		0.0121121025	[0.0091-0.0151] unit decrease	NR [NR]	N
608	chr6_apd_hap1	3042739	3042740	rs61748589	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C4A;C4B	5,362 Icelandic ancestry individuals	NA	6p21.33		rs61748589-G	0.01635	1E-9		0.440324	[0.3-0.58] unit decrease	Illumina [7506463] (imputed)	N
608	chr6_apd_hap1	3043017	3043018	rs2075801	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	CLIC1, MSH5-SAPCD1, MSH5, SAPCD1-AS1, RNU6-850P, SAPCD1, VARS, VWA7	rs2075801-A	0.1582915	8E-15	(EA, gp41 C34 peptide, HIV)	0.4506	[0.34-0.56] unit increase	Affymetrix [509946]	N
608	chr6_apd_hap1	3044109	3044110	rs707938	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	6p21.33	NR	rs707938-A	0.319085	5E-9		0.039337814	[0.026-0.053] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
608	chr6_apd_hap1	3044109	3044110	rs707938	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	6p21.33	Intergenic	rs707938-A	0.6802	4E-9		0.018	[0.012-0.024] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
608	chr6_apd_hap1	3044109	3044110	rs707938	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p21.33	NR	rs707938-?	NR	9E-7		4.905	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
608	chr6_apd_hap1	3044109	3044110	rs707938	29773799	Horikoshi M	2018-05-17	Nat Commun	Elucidating the genetic architecture of reproductive ageing in the Japanese population.	Menarche (age at onset)	67,029 Japanese ancestry women	73,397 European ancestry women	6p21.33	NR	rs707938-A	0.5873	1E-12	(japanese)	0.189	[0.14-0.24] year increase	Illumina [at least 532488] (imputed)	N
608	chr6_apd_hap1	3044109	3044110	rs707938	26414677	Day FR	2015-11-01	Nat Genet	Large-scale genomic analyses link reproductive aging to hypothalamic signaling, breast cancer susceptibility and BRCA1-mediated DNA repair.	Menopause (age at onset)	up to 69,626 European ancestry women	NA	6p21.33	MSH5, HLA	rs707938-G	0.32	7E-15		0.17	[0.13-0.21] years decrease	Affymetrix, Illumina [~ 2600000] (imputed)	N
608	chr6_apd_hap1	3044675	3044676	rs1802127	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.33	NR	rs1802127-T	0.016	3E-6	(women)	0.571389	[0.33-0.81] unit increase	Affymetrix [up to 8900000] (imputed)	N
608	chr6_apd_hap1	3044675	3044676	rs1802127	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.33	NR	rs1802127-T	0.016	1E-10		0.461925	[0.32-0.6] unit increase	Affymetrix [up to 8900000] (imputed)	N
608	chr6_apd_hap1	3045501	3045502	rs28399987	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs28399987-?		7E-8		1.06	[1.04-1.09]	Illumina [7645193] (imputed)	N
608	chr6_apd_hap1	3045501	3045502	rs28399987	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p21.33	MSH5, C6orf26	rs28399987-A	0.02	8E-8	(Turkish)	3.55	[2.17-5.79]	Illumina [up to 547389]	N
608	chr6_apd_hap1	3048216	3048217	rs3101017	33909500	Moll M	2021-04-28	Am J Physiol Lung Cell Mol Physiol	A Systematic Analysis of Protein-altering Exonic Variants in Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease	up to 31,465 European ancestry cases, up to 203,688 European ancestry controls, up to 1,413 African ancestry cases, up to 6,080 African ancestry controls, up to 287 East Asian ancestry cases, up to 7,484 East Asian ancestry controls, up to 61 Hispanic cases, up to 613 Hispanic controls	NA	6p21.33	VWA7	rs3101017-C	0.13	2E-14		1.12	[1.09 -1.15]	Illumina [at least 109036]	N
608	chr6_apd_hap1	3048216	3048217	rs3101017	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p21.33	VWA7	rs3101017-C		2E-35		0.041	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
608	chr6_apd_hap1	3048701	3048703	rs9279411	28067912	Lee JC	2017-01-09	Nat Genet	Genome-wide association study identifies distinct genetic contributions to prognosis and susceptibility in Crohn's disease.	Poor prognosis in Crohn's disease	1,762 Northern European ancestry poor prognosis cases, 972 Northern European ancestry good prognosis controls.		6p21.33	MHC	rs9279411-?	NR	5E-9		1.67	[1.41-2.00]	Affymetrix, Illumina [at least 7000000] (imputed)	N
608	chr6_apd_hap1	3053158	3053159	rs9461721	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.33		rs9461721-A	0.972	3E-27				Affymetrix [10369434] (imputed)	N
608	chr6_apd_hap1	3053870	3053871	rs3130490	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	6p21.33	NR	rs3130490-?	NR	5E-10				Affymetrix [~ 8270000] (imputed)	N
608	chr6_apd_hap1	3053870	3053871	rs3130490	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	6p21.33	NR	rs3130490-?	NR	2E-14				Affymetrix [~ 8270000] (imputed)	N
608	chr6_apd_hap1	3054248	3054249	rs143029752	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs143029752-?		3E-8		1.78	[1.45-2.19]	Illumina [7645193] (imputed)	N
608	chr6_apd_hap1	3054434	3054435	rs191306205	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	6p21.33	NR	rs191306205-?	NR	1E-9	(CCL19)	0.542377	[0.37-0.72] unit increase	Illumina [11901634] (imputed)	N
608	chr6_apd_hap1	3054480	3054481	rs527960948	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on switched memory B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs527960948-C	0.09002	2E-9		0.3289	[0.22-0.44] unit increase	Illumina [18238311] (imputed)	N
608	chr6_apd_hap1	3054480	3054481	rs527960948	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on IgD- CD38- B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs527960948-C	0.09002	4E-8		0.2922	[0.19-0.4] unit increase	Illumina [18238311] (imputed)	N
608	chr6_apd_hap1	3055203	3055204	rs805825	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.33		rs805825-G	0.561	1E-14				Affymetrix [10369434] (imputed)	N
608	chr6_apd_hap1	3055203	3055204	rs805825	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p21.33		rs805825-G	0.561	2E-10				Affymetrix [10369434] (imputed)	N
608	chr6_apd_hap1	3056408	3056409	rs707930	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	6p21.33	NR	rs707930-T	0.477089	4E-14		0.0517342	[0.038-0.065] unit decrease	Affymetrix [17914406] (imputed)	N
608	chr6_apd_hap1	3056991	3056992	rs6914412	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Mean platelet volume	21,347 Hispanic or Latin American individuals	NA	6p21.33		rs6914412-T	0.1345	4E-7		0.1401	[0.086-0.194] unit increase	Affymetrix, Illumina [NR] (imputed)	N
608	chr6_apd_hap1	3056991	3056992	rs6914412	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	6p21.33	VWA7	rs6914412-C	0.0959	9E-11		0.03949006	[0.028-0.051] unit increase	Affymetrix [~ 2500000] (imputed)	N
608	chr6_apd_hap1	3057339	3057340	rs707928	33563987	Tyrrell J	2021-02-09	Nat Commun	Genetic predictors of participation in optional components of UK Biobank.	Percentage of invited food questionnaires completed	300,639 European ancestry individuals	NA	6p21.33	NR	rs707928-A	0.66	8E-9		0.54	[0.36-0.72] unit decrease	Affymetrix [39302896] (imputed)	N
608	chr6_apd_hap1	3057339	3057340	rs707928	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling worry	372,869 European ancestry individuals	NA	6p21.33	SAPCD1	rs707928-A	0.346873	2E-8		5.643	unit increase	NR [10847151] (imputed)	N
608	chr6_apd_hap1	3060213	3060214	rs3130491	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Diastolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	6p21.33	VARS	rs3130491-A	0.3561	4E-14		0.317	[0.23-0.4] mmHg decrease	Affymetrix [NR] (imputed)	N
608	chr6_apd_hap1	3060267	3060268	rs707927	31932636	Hebbar P	2020-01-13	Sci Rep	Genome-wide association study identifies novel risk variants from RPS6KA1, CADPS, VARS, and DHX58 for fasting plasma glucose in Arab population.	Fasting plasma glucose	1,353 Arab ancestry individuals	1,176 Arab ancestry individuals	6p21.33	VARS, VWA7	rs707927-G	NR	3E-9		5.928	[NR] unit increase	Illumina [632375]	N
608	chr6_apd_hap1	3061297	3061298	rs909267	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	VARS	rs909267-C	NR	2E-8		0.0322466	[0.021-0.043] unit decrease	Affymetrix [321016] (imputed)	N
608	chr6_apd_hap1	3063891	3063892	rs915652	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p21.33	VARS	rs915652-A	0.337	4E-32				Illumina [118177]	N
608	chr6_apd_hap1	3070526	3070527	rs9469053	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on IgD- CD38dim B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs9469053-G	0.18398	1E-10		0.2372	[0.16-0.31] unit increase	Illumina [18238311] (imputed)	N
608	chr6_apd_hap1	3073680	3073681	rs6899983	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Aspartate aminotransferase levels in low alcohol consumption	8,716 individuals	NA	6p21.33	NR	rs6899983-?	NR	2E-7		0.1467	[0.092-0.202] unit increase	Illumina [~ 7800000] (imputed)	N
608	chr6_apd_hap1	3075812	3075813	rs9469054	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	6p21.33	VARS	rs9469054-A	0.0247	1E-20		0.1068719	[0.084-0.129] unit increase	Affymetrix [~ 2500000] (imputed)	N
608	chr6_apd_hap1	3076614	3076615	rs3115670	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	6p21.33	VARS	rs3115670-T	NR	1E-19		0.0626938	[0.049-0.076] unit decrease	Illumina [13520550] (imputed)	N
608	chr6_apd_hap1	3077592	3077593	rs2607015	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	VARS	rs2607015-C	NR	5E-12		0.0196764	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
608	chr6_apd_hap1	3077592	3077593	rs2607015	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	VARS	rs2607015-C	NR	3E-8		0.0175576	[0.011-0.024] unit increase	Affymetrix [323858] (imputed)	N
608	chr6_apd_hap1	3077592	3077593	rs2607015	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	VARS	rs2607015-C	NR	4E-11		0.0188809	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
608	chr6_apd_hap1	3077593	3077594	rs2753960	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	VARS	rs2753960-T	NR	1E-8		0.0161747	[0.011-0.022] unit decrease	Affymetrix [321016] (imputed)	N
608	chr6_apd_hap1	3077593	3077594	rs2753960	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	VARS	rs2753960-T	NR	3E-11		0.0207398	[0.015-0.027] unit decrease	Affymetrix [323123] (imputed)	N
608	chr6_apd_hap1	3077593	3077594	rs2753960	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	VARS	rs2753960-T	NR	3E-14		0.0219625	[0.016-0.028] unit increase	Affymetrix [321169] (imputed)	N
608	chr6_apd_hap1	3077593	3077594	rs2753960	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	6p21.33	VARS	rs2753960-T	0.4128	2E-14		0.02776258	[0.021-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
608	chr6_apd_hap1	3080613	3080614	rs1144710	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	6p21.33	LSM2	rs1144710-T	NR	2E-11		0.192529	[0.14-0.25] unit increase	Illumina [at least 950000] (imputed)	N
608	chr6_apd_hap1	3080613	3080614	rs1144710	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA	6p21.33	NR	rs1144710-?	NR	6E-6		0.0474	[0.027-0.068] unit increase	Illumina [at least 560000] (imputed)	N
608	chr6_apd_hap1	3080613	3080614	rs1144710	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p21.33	NR	rs1144710-?	NR	2E-10		0.0847	[0.059-0.111] unit increase	Illumina [at least 560000] (imputed)	N
608	chr6_apd_hap1	3092447	3092448	rs34636308	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	6p21.33	NR	rs34636308-?	NR	5E-14		7.528	NR z score decrease	Illumina [at least 830937] (imputed)	N
608	chr6_apd_hap1	3092837	3092838	rs2227955	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	C6orf48, HSPA1L, LSM2, HSPA1A, SNORD52, SNORD48, NEU1, SLC44A4	rs2227955-G	0.02306921	4E-9	(EA, gp41 C34 peptide, HIV)	0.8484	[0.57-1.13] unit increase	Affymetrix [509946]	N
608	chr6_apd_hap1	3092837	3092838	rs2227955	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	C6orf48, HSPA1L, LSM2, HSPA1A, SNORD52, SNORD48, NEU1, SLC44A4	rs2227955-G	0.02306921	4E-13	(EA, Neutrophil collagenase)	1.024	[0.75-1.3] unit increase	Affymetrix [509946]	N
608	chr6_apd_hap1	3093032	3093033	rs2227956	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CCL19	5,367 Icelandic ancestry individuals	NA	6p21.33		rs2227956-G	0.2402	7E-14		0.167141	[0.12-0.21] unit increase	Illumina [7506463] (imputed)	N
608	chr6_apd_hap1	3093289	3093290	rs2075799	23028341	Yang X	2012-09-13	PLoS Genet	Genome-wide association study for serum complement C3 and C4 levels in healthy Chinese subjects.	Complement C3 and C4 levels	1,999 Han Chinese ancestry male individuals	1,496 Han Chinese ancestry male individuals	6p21.33	C4	rs2075799-T	0.20	6E-97	(Serum level of C4)	0.17	[0.15-0.19] g/L decrease	Illumina [1940245] (imputed)	N
608	chr6_apd_hap1	3094999	3095000	rs115333512	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL36A	5,364 Icelandic ancestry individuals	NA	6p21.33		rs115333512-T	0.07275	7E-16		0.295426	[0.22-0.37] unit decrease	Illumina [7506463] (imputed)	N
608	chr6_apd_hap1	3096717	3096718	rs12213612	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p21.33	NR	rs12213612-?	NR	1E-8		0.1635	[0.11-0.22] unit increase	Illumina [at least 560000] (imputed)	N
608	chr6_apd_hap1	3098267	3098268	rs1043618	32589924	Bi W	2020-06-23	Am J Hum Genet	A Fast and Accurate Method for Genome-Wide Time-to-Event Data Analysis and Its Application to UK Biobank.	Cataract (time to event)	22,635 British ancestry cases, 260,236 British ancestry controls	NA	6p21.33	HSPA1A46	rs1043618-?	NR	4E-8				NR [~ 24000000] (imputed)	N
608	chr6_apd_hap1	3099988	3099989	rs506770	34642315	Ferreiro-Iglesias A	2021-10-12	Nat Commun	Germline determinants of humoral immune response to HPV-16 protect against oropharyngeal cancer.	Oropharynx cancer and human papilloma virus 16 negative oropharyngeal cancer	2,359 European ancestry cases, 565 European ancestry controls	NA	6p21.33		rs506770-C	NR	2E-6		1.2434		Illumina [up to 7574753] (imputed)	N
608	chr6_apd_hap1	3101125	3101126	rs17201192	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.33	HSPA1L	rs17201192-T	0.023301	2E-14		0.058121365	[0.043-0.073] unit increase	Affymetrix [93095623] (imputed)	N
608	chr6_apd_hap1	3101723	3101724	rs2763977	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HSPA1A	rs2763977-A	NR	2E-10		0.028855	[0.02-0.038] unit increase	Affymetrix [319769] (imputed)	N
608	chr6_apd_hap1	3101723	3101724	rs2763977	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HSPA1A	rs2763977-A	NR	4E-10		0.0284684	[0.02-0.037] unit increase	Affymetrix [319769] (imputed)	N
608	chr6_apd_hap1	3104149	3104149	rs139759813	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HSPA1A	rs139759813-GA	NR	2E-9		0.0236752	[0.016-0.031] unit decrease	Affymetrix [127266] (imputed)	N
608	chr6_apd_hap1	3109355	3109356	rs2763979	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)(bidirectional)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.33		rs2763979-C	NR	2E-14				Affymetrix [7846216] (imputed)	N
608	chr6_apd_hap1	3109355	3109356	rs2763979	32771030	Tangtanatakul P	2020-08-08	Arthritis Res Ther	Meta-analysis of genome-wide association study identifies FBN2 as a novel locus associated with systemic lupus erythematosus in Thai population.	Systemic lupus erythematosus	487 Thai cases, 1,606 Thai controls	405 Thai cases, 1,590 Thai controls	6p21.33	HSPA1A, HSPA1B	rs2763979-A	0.36	6E-6		1.2994	[NR]	Illumina [421909] (imputed)	N
608	chr6_apd_hap1	3113834	3113835	rs3115674	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.33	NR	rs3115674-T	0.983	1E-8		0.652	[0.51-0.8]	Illumina [11270530] (imputed)	N
608	chr6_apd_hap1	3114111	3114112	rs34278010	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs34278010-G	0.977	3E-44				Affymetrix [10369434] (imputed)	N
608	chr6_apd_hap1	3115627	3115628	rs2471980	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Prostate cancer	7,438 White British ancestry cases, 118,206 White British ancestry controls	NA	6p21.33		rs2471980-?	NR	2E-6		0.915623	[0.88-0.95]	NR [680312]	N
608	chr6_apd_hap1	3117218	3117219	rs4711279	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs4711279-C	0.824607758652095	1E-6	(IGP41)	0.1858	[0.11-0.26] unit decrease	Illumina [~ 2500000] (imputed)	N
608	chr6_apd_hap1	3117218	3117219	rs4711279	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs4711279-C	0.824401248864668	4E-6	(IGP1)	0.1774	[0.1-0.25] unit decrease	Illumina [~ 2500000] (imputed)	N
608	chr6_apd_hap1	3117218	3117219	rs4711279	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs4711279-C	0.823257144469526	3E-7	(IGP19)	0.1964	[0.12-0.27] unit decrease	Illumina [~ 2500000] (imputed)	N
608	chr6_apd_hap1	3117294	3117295	rs9368699	20041166	Fellay J	2009-12-24	PLoS Genet	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	6p21.33	SNORD52	rs9368699-?	NR	5E-8	(progression)			Illumina [NR]	N
608	chr6_apd_hap1	3117816	3117817	rs763298451	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	C6orf48, SNORD48	rs763298451-CT	NR	1E-12		0.0394762	[0.029-0.05] unit increase	Affymetrix [323123] (imputed)	N
608	chr6_apd_hap1	3117882	3117883	rs17201248	26151496	Chen PL	2015-07-07	Nat Commun	Genetic determinants of antithyroid drug-induced agranulocytosis by human leukocyte antigen genotyping and genome-wide association study.	Thionamide-induced agranulocytosis in Graves' disease	21 East Asian ancestry cases with agranulocytosis, 662 East Asian ancestry cases without agranulocytosis	21 East Asian ancestry cases with agranulocytosis, 546 East Asian ancestry cases without agranulocytosis	6p21.33	HLA	rs17201248-T	0.092	3E-7	(trend)	3.48	[2.09-5.81] (allelic)	Affymetrix [522980]	N
608	chr6_apd_hap1	3119483	3119484	rs11968400	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	6p21.33	C6orf48	rs11968400-?	NR	6E-12		0.0655868	[0.047-0.084] unit increase	Illumina [4804024] (imputed)	N
608	chr6_apd_hap1	3120354	3120355	rs115487693	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	6p21.33	C6orf48	rs115487693-C	0.0445	4E-21		0.08313974	[0.066-0.1] unit decrease	Affymetrix [~ 2500000] (imputed)	N
608	chr6_apd_hap1	3136693	3136694	rs35745547	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	NEU1	rs35745547-A	NR	1E-9		0.0190063	[0.013-0.025] unit increase	Affymetrix [321169] (imputed)	N
608	chr6_apd_hap1	3137369	3137370	rs9267647	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	6p21.33	NEU1	rs9267647-T	0.132946	4E-11		0.022519508	[0.016-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
608	chr6_apd_hap1	3138010	3138011	rs115310850	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.33	NR	rs115310850-A	0.01	2E-11		0.616842	[0.44-0.8] unit increase	Affymetrix [up to 8900000] (imputed)	N
608	chr6_apd_hap1	3139666	3139667	rs9267650	27539887	Chahal HS	2016-08-19	Nat Commun	Genome-wide association study identifies 14 novel risk alleles associated with basal cell carcinoma.	Basal cell carcinoma	12.945 European ancestry cases, 274,252 European ancestry controls	4,242 European ancestry cases, 12,802 European ancestry controls	6p21.33	NEU1	rs9267650-T	0.05	1E-8		1.17	[NR]	Illumina [at least 560000] (imputed)	N
608	chr6_apd_hap1	3141459	3141460	rs622076	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C2	5,363 Icelandic ancestry individuals	NA	6p21.33		rs622076-A	0.1077	2E-23		0.300008	[0.24-0.36] unit increase	Illumina [7506463] (imputed)	N
608	chr6_apd_hap1	3141459	3141460	rs622076	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	6p21.33	NEU1	rs622076-A	0.1361	3E-14	(discovery)	0.0035	[0.0025-0.0045] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
608	chr6_apd_hap1	3142040	3142041	rs13118	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6p21.33	SLC44A4	rs13118-?	NR	5E-6	(TAG 52:6)	0.3502205	[0.2-0.5] unit increase	Affymetrix [at least 2500000] (imputed)	N
609	chr6_apd_hap1	3149916	3149917	rs74290525	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	NA	6p21.33	SLC44A4	rs74290525-G		1E-12	(conditional)	2.06	[NR]	Illumina [> 644674] (imputed)	N
609	chr6_apd_hap1	3149918	3149919	rs693906	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	6p21.33		rs693906-C	NR	2E-33		0.029	[0.024-0.034] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
609	chr6_apd_hap1	3149918	3149919	rs693906	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Scarlet fever	6,812 European ancestry cases, 113,837 European ancestry controls	NA	6p21.33	NR	rs693906-?	NR	7E-6		0.1149	[0.065-0.164] unit decrease	Illumina [at least 560000] (imputed)	N
609	chr6_apd_hap1	3151196	3151197	rs542418	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.33	NR	rs542418-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
609	chr6_apd_hap1	3151196	3151197	rs542418	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	6p21.33	NR	rs542418-?	NR	3E-6		0.0552	[0.032-0.078] unit increase	Illumina [at least 560000] (imputed)	N
609	chr6_apd_hap1	3151581	3151582	rs521977	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	SLC44A4	rs521977-T	NR	9E-19		0.0294152	[0.023-0.036] unit decrease	Affymetrix [323858] (imputed)	N
609	chr6_apd_hap1	3151581	3151582	rs521977	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	SLC44A4	rs521977-T	NR	3E-16		0.0271844	[0.021-0.034] unit decrease	Affymetrix [127266] (imputed)	N
609	chr6_apd_hap1	3151581	3151582	rs521977	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Perceived unattractiveness to mosquitoes	16,576 European ancestry individuals	NA	6p21.33	SLC44A4	rs521977-T	0.276	4E-7		0.131107	[0.08-0.182] unit increase	Illumina [7433384] (imputed)	N
609	chr6_apd_hap1	3151581	3151582	rs521977	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	6p21.33	SLC44A4	rs521977-T	NR	9E-7		0.0192183	[0.012-0.027] unit increase	Illumina [13519193] (imputed)	N
609	chr6_apd_hap1	3151581	3151582	rs521977	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	6p21.33	SLC44A4	rs521977-T	NR	4E-20		0.0380858	[0.03-0.046] unit increase	Illumina [13520550] (imputed)	N
609	chr6_apd_hap1	3151820	3151821	rs11966200	20526339	Quan C	2010-06-06	Nat Genet	Genome-wide association study for vitiligo identifies susceptibility loci at 6q27 and the MHC.	Vitiligo	1,117 Han Chinese ancestry cases, 1,429 Han Chinese ancestry controls	6,623 East Asian ancestry cases, 10,740 East Asian ancestry controls	6p21.33	HLA-C, HLA-B	rs11966200-A	0.06	1E-48		1.9	[1.74-2.07]	Illumina [493909]	N
609	chr6_apd_hap1	3152031	3152032	rs660550	31837886	Kennedy OJ	2019-12-02	Am J Kidney Dis	Coffee Consumption and Kidney Function: A Mendelian Randomization Study.	Coffee consumption (cups per day)	227,666 British ancestry individuals	NA	6p21.33	SLC44A4	rs660550-A	0.525	8E-9		0.034	NR cups per day decrease	NR [NR]	N
609	chr6_apd_hap1	3152715	3152716	rs577272	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs577272-G	NR	6E-9		0.0164512	[0.011-0.022] unit decrease	Affymetrix [321114] (imputed)	N
609	chr6_apd_hap1	3152715	3152716	rs577272	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs577272-G	NR	1E-21		0.0272058	[0.022-0.033] unit decrease	Affymetrix [321169] (imputed)	N
609	chr6_apd_hap1	3152715	3152716	rs577272	27286809	Ligthart S	2016-06-10	BMC Genomics	Bivariate genome-wide association study identifies novel pleiotropic loci for lipids and inflammation.	C-reactive protein levels or total cholesterol levels (pleiotropy)	65,000 individuals (C-reactive protein), 100,184 individuals (total cholesterol)	NA	6p21.33	SLC44A4	rs577272-A	NR	2E-8				NR [2501549] (imputed)	N
609	chr6_apd_hap1	3153242	3153243	rs644774	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs644774-C	NR	4E-22		0.0271946	[0.022-0.033] unit decrease	Affymetrix [319769] (imputed)	N
609	chr6_apd_hap1	3153242	3153243	rs644774	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs644774-C	NR	6E-21		0.0263821	[0.021-0.032] unit decrease	Affymetrix [319769] (imputed)	N
609	chr6_apd_hap1	3153242	3153243	rs644774	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs644774-C	NR	2E-13		0.0206859	[0.015-0.026] unit increase	Affymetrix [321016] (imputed)	N
609	chr6_apd_hap1	3153465	3153466	rs494620	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs494620-A	NR	1E-13		0.0214886	[0.016-0.027] unit increase	Affymetrix [319769] (imputed)	N
609	chr6_apd_hap1	3153465	3153466	rs494620	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	SLC44A4	rs494620-A	NR	4E-10		0.0201809	[0.014-0.026] unit increase	Affymetrix [323858] (imputed)	N
609	chr6_apd_hap1	3153465	3153466	rs494620	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs494620-A	NR	6E-13		0.0208264	[0.015-0.027] unit increase	Affymetrix [319769] (imputed)	N
609	chr6_apd_hap1	3153465	3153466	rs494620	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	SLC44A4	rs494620-A	NR	6E-9		0.0187173	[0.012-0.025] unit increase	Affymetrix [127266] (imputed)	N
609	chr6_apd_hap1	3153465	3153466	rs494620	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs494620-A	NR	7E-16		0.0236685	[0.018-0.029] unit increase	Affymetrix [321169] (imputed)	N
609	chr6_apd_hap1	3153465	3153466	rs494620	19448619	Stolk L	2009-05-15	Nat Genet	Loci at chromosomes 13, 19 and 20 influence age at natural menopause.	Menopause (age at onset)	2,979 European ancestry female individuals	2,560 European ancestry female individuals	6p21.33	NR	rs494620-?	NR	5E-7		0.3	[0.18-0.42] years increase	Illumina [315418]	N
609	chr6_apd_hap1	3154534	3154535	rs3130482	31879980	German CA	2019-12-26	Genet Epidemiol	Ordered multinomial regression for genetic association analysis of ordinal phenotypes at Biobank scale.	Hypertension	30,822 British ancestry normal blood pressure individuals, 25,242 British ancestry elevated blood pressure individuals, 50,461 British ancestry stage 1 hypertension individuals, 75,286 British ancestry stage 2 hypertension individuals, 3,754 British ancestry hypertension crisis individuals	NA	6p21.33	SLC44A4	rs3130482-?	NR	1E-10		0.03993774	NR unit increase	Affymetrix [464137]	N
609	chr6_apd_hap1	3154773	3154774	rs2763981	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs2763981-T	NR	6E-27		0.0318493	[0.026-0.038] unit decrease	Affymetrix [319769] (imputed)	N
609	chr6_apd_hap1	3154773	3154774	rs2763981	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs2763981-T	NR	3E-25		0.0308309	[0.025-0.037] unit decrease	Affymetrix [319769] (imputed)	N
609	chr6_apd_hap1	3154773	3154774	rs2763981	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs2763981-T	NR	3E-8		0.0165328	[0.011-0.022] unit decrease	Affymetrix [321114] (imputed)	N
609	chr6_apd_hap1	3154773	3154774	rs2763981	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	SLC44A4	rs2763981-T	NR	2E-27		0.0349933	[0.029-0.041] unit increase	Affymetrix [323123] (imputed)	N
609	chr6_apd_hap1	3154773	3154774	rs2763981	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs2763981-T	NR	1E-24		0.0307655	[0.025-0.037] unit decrease	Affymetrix [321169] (imputed)	N
609	chr6_apd_hap1	3154773	3154774	rs2763981	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	6p21.33	SLC44A4	rs2763981-A	NR	8E-14				Affymetrix, Illumina [NR] (imputed)	N
609	chr6_apd_hap1	3154773	3154774	rs2763981	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	6p21.33	SLC44A4	rs2763981-A	NR	1E-18	(EA)			Affymetrix, Illumina [NR] (imputed)	N
609	chr6_apd_hap1	3154773	3154774	rs2763981	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	6p21.33	SLC44A4	rs2763981-A	NR	3E-19	(EA)			Affymetrix, Illumina [NR] (imputed)	N
609	chr6_apd_hap1	3154773	3154774	rs2763981	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	6p21.33	SLC44A4	rs2763981-A	NR	1E-14				Affymetrix, Illumina [NR] (imputed)	N
609	chr6_apd_hap1	3154773	3154774	rs2763981	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	6p21.33	SLC44A4	rs2763981-A	NR	6E-14	(EA)	0.021	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
609	chr6_apd_hap1	3154773	3154774	rs2763981	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	6p21.33	SLC44A4	rs2763981-A	NR	1E-10		0.015	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
609	chr6_apd_hap1	3154773	3154774	rs2763981	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	6p21.33	SLC44A4	rs2763981-A	NR	4E-6		0.012	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
609	chr6_apd_hap1	3154773	3154774	rs2763981	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	6p21.33	SLC44A4	rs2763981-A	NR	2E-8	(EA)	0.021	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
609	chr6_apd_hap1	3154773	3154774	rs2763981	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	6p21.33	SLC44A4	rs2763981-A	NR	5E-11				Affymetrix, Illumina [NR] (imputed)	N
609	chr6_apd_hap1	3154773	3154774	rs2763981	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	6p21.33	SLC44A4	rs2763981-A	NR	3E-11	(EA)			Affymetrix, Illumina [NR] (imputed)	N
609	chr6_apd_hap1	3154773	3154774	rs2763981	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	6p21.33	SLC44A4	rs2763981-A	NR	7E-12				Affymetrix, Illumina [NR] (imputed)	N
609	chr6_apd_hap1	3154773	3154774	rs2763981	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	6p21.33	SLC44A4	rs2763981-A	NR	4E-12	(EA)			Affymetrix, Illumina [NR] (imputed)	N
609	chr6_apd_hap1	3154773	3154774	rs2763981	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	6p21.33	SLC44A4	rs2763981-A	NR	6E-9	(EA)	1.145	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
609	chr6_apd_hap1	3154773	3154774	rs2763981	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	6p21.33	SLC44A4	rs2763981-A	NR	3E-9		1.01	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
609	chr6_apd_hap1	3154773	3154774	rs2763981	30670697	Kilpelainen TO	2019-01-22	Nat Commun	Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity.	Triglycerides x physical activity interaction (2df test)	7,294 African American inactive individuals, 12,832 African American active individuals, 1,352 Asian ancestry inactive individuals, 3,049 Asian ancestry active individuals, 20,622 European ancestry inactive individuals, 51,480 European ancestry active individuals, 2,166 Hispanic or Latin American inactive individuals, 3,486 Hispanic or Latin American active individuals	580 African American inactive individuals, 1,540 African American active individuals, 1,217 South African Black ancestry inactive individuals, 389 South African Black ancestry active individuals, 765 East Asian ancestry inactive individuals, 1,814 East Asian ancestry active individuals,  724 South Asian ancestry inactive individuals, 1,424 South Asian ancestry active individuals, 32,456 European ancestry inactive individuals, 49,510 European ancestry active individuals, 2,619 Hispanic inactive individuals, 8,803 Hispanic active individuals	6p21.33	NR	rs2763981-A	0.7045	4E-14	(EA)			Affymetrix, Illumina [at least 2500000] (imputed)	N
609	chr6_apd_hap1	3154773	3154774	rs2763981	28334935	Raffield LM	2017-05-15	Hum Mol Genet	Genome-wide association study of iron traits and relation to diabetes in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL): potential genomic intersection of iron and glucose regulation?	Iron status biomarkers (total iron binding capacity)	12,586 Hispanic/Latino individuals	NA	6p21.33	SLC44A4	rs2763981-T	NR	8E-7		0.124	[0.075-0.173] unit decrease	Illumina [27700000] (imputed)	N
609	chr6_apd_hap1	3155167	3155168	rs9267653	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs9267653-T	NR	9E-9		0.0178718	[0.012-0.024] unit decrease	Affymetrix [319769] (imputed)	N
609	chr6_apd_hap1	3155167	3155168	rs9267653	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs9267653-T	NR	1E-8		0.0176946	[0.012-0.024] unit decrease	Affymetrix [319769] (imputed)	N
609	chr6_apd_hap1	3155167	3155168	rs9267653	26423011	Wain LV	2015-09-27	Lancet Respir Med	Novel insights into the genetics of smoking behaviour, lung function, and chronic obstructive pulmonary disease (UK BiLEVE): a genetic association study in UK Biobank.	Lung function (low FEV1 vs high FEV1)	19,493 European ancestry individuals with low FEV1 measurements, 9,808 European ancestry individuals with high FEV1 measurements	NA	6p21.33	SLC44A4	rs9267653-C	NR	4E-9		0.124	[0.083-0.165] unit increase	Affymetrix [28509962] (imputed)	N
609	chr6_apd_hap1	3155207	3155208	rs553108	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls	NA	6p21.33	SLC44A4	rs553108-A	0.418103	2E-10		0.0516698	[0.036-0.068] unit decrease	Affymetrix [7288503] (imputed)	N
609	chr6_apd_hap1	3155207	3155208	rs553108	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Ease of getting up in the morning	385,949 European ancestry individuals	NA	6p21.33	NR	rs553108-A	0.4159	3E-8		0.0097	[0.0062-0.0132] unit increase	Affymetrix, Illumina [10862568] (imputed)	N
609	chr6_apd_hap1	3155229	3155230	rs501942	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	6p21.33	NR	rs501942-T	0.09	3E-19		1.26	[1.2-1.32]	Illumina [8468885] (imputed)	N
609	chr6_apd_hap1	3155229	3155230	rs501942	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in ever smokers	23,223 European ancestry cases,  16,964 European ancestry controls	NA	6p21.33	SLC44A4	rs501942-T	0.101035865	3E-14		1.2034894	[1.147434239-1.262282973]	Illumina [10439017] (imputed)	N
609	chr6_apd_hap1	3155229	3155230	rs501942	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	6p21.33	SLC44A4	rs501942-T	0.098642093	8E-19		1.1851386	[1.141406179-1.230546538]	Illumina [10439017] (imputed)	N
609	chr6_apd_hap1	3155761	3155762	rs9267654	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs9267654-A	NR	2E-12		0.0251845	[0.018-0.032] unit decrease	Affymetrix [319769] (imputed)	N
609	chr6_apd_hap1	3155761	3155762	rs9267654	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs9267654-A	NR	3E-12		0.0249577	[0.018-0.032] unit decrease	Affymetrix [319769] (imputed)	N
609	chr6_apd_hap1	3155761	3155762	rs9267654	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs9267654-A	NR	4E-10		0.0223343	[0.015-0.029] unit increase	Affymetrix [321016] (imputed)	N
609	chr6_apd_hap1	3156643	3156644	rs573098	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs573098-A	NR	2E-20		0.0279205	[0.022-0.034] unit increase	Affymetrix [321016] (imputed)	N
609	chr6_apd_hap1	3156643	3156644	rs573098	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p21.33	SLC44A4	rs573098-A	NR	1E-9		0.0200634	[0.014-0.027] unit decrease	Affymetrix [323858] (imputed)	N
609	chr6_apd_hap1	3156643	3156644	rs573098	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	6p21.33	NR	rs573098-T	0.679422	2E-12		0.0509102	[0.037-0.065] unit decrease	Affymetrix [17914406] (imputed)	N
609	chr6_apd_hap1	3157351	3157352	rs12661281	25629512	Cheng CY	2015-01-28	Nat Commun	New loci and coding variants confer risk for age-related macular degeneration in East Asians.	Exudative age-related macular degeneration	2,119 East Asian ancestry cases, 5,691 East Asian ancestry controls	4,226 East Asian ancestry cases, 10,289 East Asian ancestry controls	6p21.33	SLC44A4	rs12661281-?	NR	1E-11		1.27	[NR]	Illumina [4471719] (imputed)	N
609	chr6_apd_hap1	3158677	3158678	rs2736428	20421499	Levy D	2010-04-26	Proc Natl Acad Sci U S A	Genome-wide association identifies OBFC1 as a locus involved in human leukocyte telomere biology.	Telomere length	3,417 European ancestry individuals	1,893 African American and European ancestry individuals, 2,876 European ancestry individuals	6p21.33	SLC44A4	rs2736428-T	NR	3E-6		0.05	[0.03-0.07] kb increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
609	chr6_apd_hap1	3160738	3160739	rs9267658	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6p21.33		rs9267658-T	0.1428	5E-12		0.0138	[0.0099-0.0177] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
609	chr6_apd_hap1	3160826	3160827	rs114400264	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		SLC44A4	rs114400264-?	NR	5E-9	(male)	2.81252	[NR] unit decrease	Affymetrix [NR] (imputed)	N
609	chr6_apd_hap1	3160987	3160988	rs9267659	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	6p21.33	SLC44A4	rs9267659-A	0.2004	4E-11		0.079	[0.056-0.102] unit increase	NR [7784415] (imputed)	N
609	chr6_apd_hap1	3161653	3161654	rs114951054	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		EHMT2-AS1	rs114951054-?	NR	2E-9	(male)	2.96479	[NR] unit decrease	Affymetrix [NR] (imputed)	N
609	chr6_apd_hap1	3161765	3161766	rs605203	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	6p21.33	NR	rs605203-A	0.62	4E-43		0.025	[0.021-0.029] unit increase	Affymetrix [2446094] (imputed)	N
609	chr6_apd_hap1	3161765	3161766	rs605203	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	6p21.33	NR	rs605203-A	0.62	5E-8				Affymetrix [2446094] (imputed)	N
609	chr6_apd_hap1	3162171	3162172	rs116369005	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	6p21.33	SLC44A4, EHMT2-AS1	rs116369005-C	0.021645	3E-10		0.052029066	[0.036-0.068] unit increase	Affymetrix [93095623] (imputed)	N
609	chr6_apd_hap1	3162389	3162390	rs41267086	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C4A;C4B	5,353 Icelandic ancestry individuals	NA	6p21.33		rs41267086-A	0.09194	2E-44		0.435404	[0.37-0.5] unit decrease	Illumina [7506463] (imputed)	N
609	chr6_apd_hap1	3162389	3162390	rs41267086	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.33	NR	rs41267086-?	NR	6E-12				Affymetrix [~ 8270000] (imputed)	N
609	chr6_apd_hap1	3162973	3162974	rs589428	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI in non-smokers	75,379 European ancestry women, 45,811 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	6p21.33	EHMT2	rs589428-G	0.651	2E-10	(EA)	0.016	[0.01-0.022] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
609	chr6_apd_hap1	3162973	3162974	rs589428	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	6p21.33	EHMT2	rs589428-G	0.65	1E-17	(EA)	0.024	[0.018-0.03] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
609	chr6_apd_hap1	3163193	3163194	rs41267090	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p21.33	EHMT2	rs41267090-T	0.05	8E-7	(EA)	2.82	[1.84-4.33]	Illumina [up to 547389]	N
609	chr6_apd_hap1	3165061	3165062	rs74434374	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NCR3	5,364 Icelandic ancestry individuals	NA	6p21.33		rs74434374-A	0.07046	4E-24		0.354873	[0.29-0.42] unit decrease	Illumina [7506463] (imputed)	N
609	chr6_apd_hap1	3165987	3165988	rs652888	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	EHMT2	rs652888-G	NR	3E-10		0.0207108	[0.014-0.027] unit decrease	Affymetrix [319769] (imputed)	N
609	chr6_apd_hap1	3165987	3165988	rs652888	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	EHMT2	rs652888-G	NR	1E-9		0.0200442	[0.014-0.027] unit decrease	Affymetrix [319769] (imputed)	N
609	chr6_apd_hap1	3165987	3165988	rs652888	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	EHMT2	rs652888-G	NR	1E-9		0.02033	[0.014-0.027] unit decrease	Affymetrix [321169] (imputed)	N
609	chr6_apd_hap1	3165987	3165988	rs652888	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p21.33	EHMT2	rs652888-G	NR	2E-8		0.0206131	[0.013-0.028] unit decrease	Affymetrix [323858] (imputed)	N
609	chr6_apd_hap1	3165987	3165988	rs652888	27157822	Hallberg P	2016-05-03	Lancet Diabetes Endocrinol	Genetic variants associated with antithyroid drug-induced agranulocytosis: a genome-wide association study in a European population.	Anti-thyroid drug induced agranulocytosis	38 European ancestry cases, 1 case, 5,170 European ancestry controls	NA	6p21.33	EHMT2	rs652888-?	NR	2E-11		4.73	[3.00-7.44]	Illumina [9380034] (imputed)	N
609	chr6_apd_hap1	3165987	3165988	rs652888	25802187	Jiang DK	2015-04-28	Hepatology	Genetic variants in five novel loci including CFB and CD40 predispose to chronic hepatitis B.	Chronic hepatitis B infection	2,514 Chinese ancestry cases, 1,130 Chinese ancestry controls	6,600 Chinese ancestry cases, 8,127 Chinese ancestry controls	6p21.33	EHMT2	rs652888-G	0.24	1E-6		1.14	[1.08-1.19]	Illumina [3680900] (imputed)	N
609	chr6_apd_hap1	3165987	3165988	rs652888	23760081	Kim YJ	2013-06-10	Hum Mol Genet	A genome-wide association study identified new variants associated with the risk of chronic hepatitis B.	Chronic hepatitis B infection	400 Korean ancestry cases, 1,000 Korean ancestry controls	971 Korean ancestry cases, 1,938 Korean ancestry controls	6p21.33	EHMT2	rs652888-?	NR	7E-13		1.38	[1.22-1.57]	Illumina [719265]	N
609	chr6_apd_hap1	3165987	3165988	rs652888	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.33	EHMT2	rs652888-C	0.2021	3E-46		2.71	[NR]	Illumina [242824]	N
609	chr6_apd_hap1	3166222	3166223	rs2844458	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	EHMT2	rs2844458-A	NR	5E-9		0.0178304	[0.012-0.024] unit increase	Affymetrix [319769] (imputed)	N
609	chr6_apd_hap1	3166222	3166223	rs2844458	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	EHMT2	rs2844458-A	NR	3E-8		0.0170038	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
609	chr6_apd_hap1	3170823	3170824	rs486416	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	6p21.33		rs486416-A	0.6376	6E-9		0.013	[0.0091-0.0169] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
609	chr6_apd_hap1	3170823	3170824	rs486416	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	6p21.33	EHMT2	rs486416-G	0.34730000000000005	1E-9		1.0203034		Affymetrix [11880941] (imputed)	N
609	chr6_apd_hap1	3173283	3173284	rs34929649	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	EHMT2	rs34929649-C	NR	3E-13		0.0219327	[0.016-0.028] unit increase	Affymetrix [321169] (imputed)	N
609	chr6_apd_hap1	3175589	3175590	rs115699278	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p21.33	EHMT2	rs115699278-T	0.011501	2E-9		0.06559309	[0.044-0.087] unit decrease	Affymetrix [93095623] (imputed)	N
609	chr6_apd_hap1	3177636	3177637	rs115062572	33841421	Li J	2021-03-25	Front Immunol	Variants at the MHC Region Associate With Susceptibility to <i>Clostridioides difficile</i> Infection: A Genome-Wide Association Study Using Comprehensive Electronic Health Records.	Clostridioides difficle infection in antibiotics-users	587 European ancestry cases, 3,166 European ancestry controls	NA	6p21.33	ZBTB12	rs115062572-T	0.022	1E-6		2.29	[1.7-2.98]	Illumina [64973696] (imputed)	N
609	chr6_apd_hap1	3177636	3177637	rs115062572	33841421	Li J	2021-03-25	Front Immunol	Variants at the MHC Region Associate With Susceptibility to <i>Clostridioides difficile</i> Infection: A Genome-Wide Association Study Using Comprehensive Electronic Health Records.	Clostridioides difficle infection	1,160 European ancestry cases, 14,144 European ancestry controls	NA	6p21.33	ZBTB12, EHMT2, C2, CYP21A2	rs115062572-T	0.0203	4E-6		1.74	[1.41-2.08]	Illumina [64973696] (imputed)	N
609	chr6_apd_hap1	3177636	3177637	rs115062572	32641083	Hillary RF	2020-07-08	Genome Med	Multi-method genome- and epigenome-wide studies of inflammatory protein levels in healthy older adults.	Tumor necrosis factor beta levels	982 Scottish ancestry individuals	NA	6p21.33	NR	rs115062572-T	0.01979	5E-10		1.23251	[0.84-1.62] unit decrease	Illumina [7903493] (imputed)	N
609	chr6_apd_hap1	3177636	3177637	rs115062572	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.33		rs115062572-T	0.02316600000000002	2E-8		1.0846895	[1.05-1.11]	Affymetrix, Illumina [9851866] (imputed)	N
609	chr6_apd_hap1	3177928	3177929	rs17207748	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		EHMT2	rs17207748-?	NR	6E-9	(male)	2.35655	[NR] unit decrease	Affymetrix [NR] (imputed)	N
609	chr6_apd_hap1	3178193	3178194	rs2243873	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	6p21.33	SLC44A4, EHMT2, STK19, CYP21A2, TNXB	rs2243873-?	NR	4E-11				Affymetrix, Illumina [18800000] (imputed)	N
609	chr6_apd_hap1	3178193	3178194	rs2243873	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	6p21.33	SLC44A4, EHMT2, STK19, CYP21A2, TNXB	rs2243873-?	NR	3E-14	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
609	chr6_apd_hap1	3178193	3178194	rs2243873	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	6p21.33	SLC44A4, EHMT2, STK19, CYP21A2, TNXB	rs2243873-?	NR	6E-10				Affymetrix, Illumina [18800000] (imputed)	N
609	chr6_apd_hap1	3178193	3178194	rs2243873	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	6p21.33	SLC44A4, EHMT2, STK19, CYP21A2, TNXB	rs2243873-?		7E-13	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
609	chr6_apd_hap1	3178193	3178194	rs2243873	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	6p21.33	SLC44A4, EHMT2, STK19, CYP21A2, TNXB	rs2243873-?	NR	4E-10				Affymetrix, Illumina [18800000] (imputed)	N
609	chr6_apd_hap1	3178193	3178194	rs2243873	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	6p21.33	SLC44A4, EHMT2, STK19, CYP21A2, TNXB	rs2243873-?	NR	1E-10	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
609	chr6_apd_hap1	3178193	3178194	rs2243873	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	6p21.33	SLC44A4, EHMT2, STK19, CYP21A2, TNXB	rs2243873-?	NR	6E-9				Affymetrix, Illumina [18800000] (imputed)	N
609	chr6_apd_hap1	3178193	3178194	rs2243873	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	6p21.33	SLC44A4, EHMT2, STK19, CYP21A2, TNXB	rs2243873-?	NR	3E-9	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
609	chr6_apd_hap1	3179298	3179299	rs115884658	32534018	Liu X	2020-06-10	Brain Behav Immun	Genetic factors underlying the bidirectional relationship between autoimmune and mental disorders - findings from a Danish population-based study.	Autoimmune traits	1,383 Danish ancestry cases, 62,656 Danish ancestry controls	NA	6p21.33	NR	rs115884658-A	0.047	2E-15		1.83	[1.6-2.1]	NR [7721839] (imputed)	N
609	chr6_apd_hap1	3179298	3179299	rs115884658	29358691	Bonas-Guarch S	2018-01-22	Nat Commun	Re-analysis of public genetic data reveals a rare X-chromosomal variant associated with type 2 diabetes.	Type 2 diabetes	7,522 European ancestry cases, 50,446 European ancestry controls	35,789 African-American, East Asian, South Asian, European or Hispanic cases, 56,738 African-American, East Asian, South Asian, European or Hispanic controls	6p21.33	EHMT2	rs115884658-A	NR	3E-10		1.21	[1.14-1.29]	Affymetrix, Illumina [1918233] (imputed)	N
609	chr6_apd_hap1	3179307	3179308	rs7887	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein EEF2K	5,361 Icelandic ancestry individuals	NA	6p21.33		rs7887-T	0.3571	6E-30		0.225707	[0.19-0.26] unit decrease	Illumina [7506463] (imputed)	N
609	chr6_apd_hap1	3179307	3179308	rs7887	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C4A;C4B	5,362 Icelandic ancestry individuals	NA	6p21.33		rs7887-T	0.3571	8E-212		0.572662	[0.54-0.61] unit decrease	Illumina [7506463] (imputed)	N
609	chr6_apd_hap1	3179434	3179435	rs2844456	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p21.33	NR	rs2844456-C	0.06	7E-13		0.82	[0.78-0.87]	Affymetrix [9886854] (imputed)	N
609	chr6_apd_hap1	3179434	3179435	rs2844456	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p21.33	NR	rs2844456-C	0.06	9E-13			[NR]	Affymetrix [9886854] (imputed)	N
609	chr6_apd_hap1	3179434	3179435	rs2844456	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in non-current smokers	16,488 European ancestry cases, 169,688 European ancestry controls	NA	6p21.33	NR	rs2844456-C	0.06	9E-13		0.82	[0.78-0.87]	Affymetrix [9886854] (imputed)	N
609	chr6_apd_hap1	3179434	3179435	rs2844456	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	6p21.33	NR	rs2844456-?		4E-16	(AGER)	0.6356	[NR] unit decrease	Illumina [NR]	N
610	chr6_apd_hap1	3355363	3355364	rs204881	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p21.33	NR	rs204881-?	NR	5E-14		0.1561	[0.12-0.2] unit increase	Illumina [at least 560000] (imputed)	N
610	chr6_apd_hap1	3359610	3359611	rs2021783	25249183	Lu X	2014-09-23	Hum Mol Genet	Genome-wide association study in Chinese identifies novel loci for blood pressure and hypertension.	Systolic blood pressure	11,816 Han Chinese ancestry individuals	69,146 Han Chinese ancestry individuals	6p21.33	CYP21A2	rs2021783-C	0.79	3E-9		0.68	[0.44-0.92] unit increase	Affymetrix, Illumina [2485448] (imputed)	N
610	chr6_apd_hap1	3359610	3359611	rs2021783	25249183	Lu X	2014-09-23	Hum Mol Genet	Genome-wide association study in Chinese identifies novel loci for blood pressure and hypertension.	Hypertension	5,065 Han Chinese ancestry cases, 4,404 Han Chinese ancestry controls	29,799 Han Chinese ancestry cases, 39,347 Han Chinese ancestry controls	6p21.33	CYP21A2	rs2021783-C	0.79	4E-11				Affymetrix, Illumina [2485448] (imputed)	N
610	chr6_apd_hap1	3359610	3359611	rs2021783	25249183	Lu X	2014-09-23	Hum Mol Genet	Genome-wide association study in Chinese identifies novel loci for blood pressure and hypertension.	Diastolic blood pressure	11,816 Han Chinese ancestry individuals	69,146 Han Chinese ancestry individuals	6p21.33	CYP21A2	rs2021783-C	0.79	2E-12		0.49	[0.35-0.63] unit increase	Affymetrix, Illumina [2485448] (imputed)	N
610	chr6_apd_hap1	3362007	3362008	rs17201560	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		TNXB	rs17201560-?	NR	3E-10		1.80132	[NR] unit decrease	Affymetrix [NR] (imputed)	N
610	chr6_apd_hap1	3364161	3364162	rs12211410	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6p21.33		rs12211410-T	0.085	2E-13	(conditional-joint)	0.0185	[0.014-0.023] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
610	chr6_apd_hap1	3364805	3364806	rs185819	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.33		rs185819-T	0.533	5E-83				Affymetrix [10369434] (imputed)	N
610	chr6_apd_hap1	3364805	3364806	rs185819	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p21.33		rs185819-T	0.533	1E-58				Affymetrix [10369434] (imputed)	N
610	chr6_apd_hap1	3364805	3364806	rs185819	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Automobile speeding propensity	404,291 European ancestry individuals	NA	6p21.33	ATF6B	rs185819-T	0.5357	2E-12		0.01581973	[0.011-0.02] unit increase	Affymetrix [11514463] (imputed)	N
610	chr6_apd_hap1	3364805	3364806	rs185819	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Systolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	6p21.33	TNXB	rs185819-C	0.513	2E-13	(EA, initial)	0.534	[0.39-0.68] unit increase	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
610	chr6_apd_hap1	3364805	3364806	rs185819	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Systolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	6p21.33	TNXB	rs185819-C	0.513	1E-17		0.365	[0.28-0.45] unit increase	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
610	chr6_apd_hap1	3364805	3364806	rs185819	18391951	Gudbjartsson DF	2008-04-06	Nat Genet	Many sequence variants affecting diversity of adult human height.	Height	30,968 European ancestry individuals	8,541 European ancestry individuals	6p21.33	HLA class III	rs185819-T	0.52	3E-8		5.2	[3.44-6.96] % s.d. increase	Affymetrix, Illumina [up to 304226]	N
610	chr6_apd_hap1	3365496	3365497	rs1150754	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	TNXB	rs1150754-T	NR	9E-16		0.0330216	[0.025-0.041] unit decrease	Affymetrix [323858] (imputed)	N
610	chr6_apd_hap1	3365496	3365497	rs1150754	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	TNXB	rs1150754-T	NR	3E-14		0.0312441	[0.023-0.039] unit decrease	Affymetrix [127266] (imputed)	N
610	chr6_apd_hap1	3365496	3365497	rs1150754	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Myeloperoxidase levels	21,758 European ancestry individuals	9,173 individuals	6p21.33		rs1150754-T	0.15	7E-9		0.0636	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
610	chr6_apd_hap1	3365496	3365497	rs1150754	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	6p21.33	TNXB	rs1150754-C	NR	3E-12	(EA)	1.117	[1.09-1.15]	Illumina [6627481] (imputed)	N
610	chr6_apd_hap1	3365496	3365497	rs1150754	21408207	Chung SA	2011-03-03	PLoS Genet	Differential genetic associations for systemic lupus erythematosus based on anti-dsDNA autoantibody production.	Systemic lupus erythematosus	811 anti-dsDNA positive European ancestry cases, 906 anti-dsDNA negative European ancestry cases, 4,813 European ancestry controls	NA	6p21.33	TNXB	rs1150754-A	0.13	6E-29	(anti-dsDNA +)	2.21	[1.93-2.53]	Illumina [421318] (imputed)	N
611	chr6_apd_hap1	3417041	3417042	rs3134963	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	6p21.32	FKBPL, PRRT1	rs3134963-T	0.149	3E-10		0.128	[0.089-0.167] unit decrease	Affymetrix [~ 11900000] (imputed)	N
611	chr6_apd_hap1	3417417	3417418	rs13211318	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Strep throat	52,487 European ancestry cases, 22,017 European ancestry controls	NA	6p21.32	NR	rs13211318-?	NR	3E-7		0.051	[0.031-0.071] unit increase	Illumina [at least 560000] (imputed)	N
611	chr6_apd_hap1	3418486	3418487	rs145827824	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.32	NR	rs145827824-G	0.011	2E-16		0.699809	[0.53-0.87] unit increase	Affymetrix [up to 8900000] (imputed)	N
611	chr6_apd_hap1	3418486	3418487	rs145827824	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.32	NR	rs145827824-G	0.011	1E-8	(women)	0.797658	[0.53-1.07] unit increase	Affymetrix [up to 8900000] (imputed)	N
611	chr6_apd_hap1	3418486	3418487	rs145827824	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.32	NR	rs145827824-G	0.011	1E-7	(men)	0.57225	[0.36-0.78] unit increase	Affymetrix [up to 8900000] (imputed)	N
611	chr6_apd_hap1	3421876	3421877	rs3096698	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL18RAP	5,360 Icelandic ancestry individuals	NA	6p21.32		rs3096698-T	0.4309	1E-12		0.134973	[0.098-0.172] unit decrease	Illumina [7506463] (imputed)	N
611	chr6_apd_hap1	3421876	3421877	rs3096698	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	6p21.32	PRRT1	rs3096698-T	0.3668	6E-15		0.2611	[0.2-0.33] mmHg decrease	Affymetrix [NR] (imputed)	N
611	chr6_apd_hap1	3424715	3424716	rs204999	23022100	Franceschini N	2012-09-26	Am J Hum Genet	Discovery and fine mapping of serum protein loci through transethnic meta-analysis.	Serum total protein level	Up to 25,539 European ancestry individuals, 10,168 Japanese ancestry individuals	NA		intergenic	rs204999-A	0.74	4E-11		0.0266	[0.019-0.034] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
611	chr6_apd_hap1	3424715	3424716	rs204999	23022100	Franceschini N	2012-09-26	Am J Hum Genet	Discovery and fine mapping of serum protein loci through transethnic meta-analysis.	Serum total protein level	Up to 25,539 European ancestry individuals, 10,168 Japanese ancestry individuals	NA		intergenic	rs204999-A	0.74	3E-9	(EA)	0.025	[0.017-0.033] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
611	chr6_apd_hap1	3424715	3424716	rs204999	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA		intergenic	rs204999-G	0.2643	9E-40		2.44	[NR]	Illumina [242824]	N
611	chr6_apd_hap1	3425250	3425251	rs77619009	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.32		rs77619009-A	0.944	4E-16				Affymetrix [10369434] (imputed)	N
611	chr6_apd_hap1	3425319	3425320	rs3130277	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	PRRT1	rs3130277-C	NR	2E-8		0.0208014	[0.014-0.028] unit decrease	Affymetrix [323858] (imputed)	N
611	chr6_apd_hap1	3425760	3425761	rs565981183	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs565981183-CA	0.876	1E-11		1.192	[1.14-1.24]	Illumina [11270530] (imputed)	N
611	chr6_apd_hap1	3427362	3427363	rs3130279	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL21	5,363 Icelandic ancestry individuals	NA	6p21.32		rs3130279-A	0.207	5E-14		0.174333	[0.13-0.22] unit increase	Illumina [7506463] (imputed)	N
611	chr6_apd_hap1	3429251	3429252	rs9296009	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	PRRT1	rs9296009-T	0.216	7E-13	(UDP-N-acetylhexosamine pyrophosphorylase, UAP1.13580.2.3)	0.21	[0.15-0.27] unit decrease	Affymetrix [10572788] (imputed)	N
611	chr6_apd_hap1	3429251	3429252	rs9296009	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	PRRT1	rs9296009-T	0.216	3E-37	(Rac GTPase-activating protein 1, RACGAP1.13587.10.3)	0.37	[0.31-0.43] unit decrease	Affymetrix [10572788] (imputed)	N
611	chr6_apd_hap1	3429251	3429252	rs9296009	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	PRRT1	rs9296009-T	0.196796488164359	4E-6	(IGP18)	0.1779	[0.1-0.25] unit decrease	Illumina [~ 2500000] (imputed)	N
611	chr6_apd_hap1	3429251	3429252	rs9296009	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	PRRT1	rs9296009-T	0.19676420855615	4E-6	(IGP25)	0.1773	[0.1-0.25] unit decrease	Illumina [~ 2500000] (imputed)	N
611	chr6_apd_hap1	3429251	3429252	rs9296009	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	PRRT1	rs9296009-T	0.196432337204109	4E-8	(IGP23)	0.2111	[0.14-0.29] unit decrease	Illumina [~ 2500000] (imputed)	N
611	chr6_apd_hap1	3429958	3429959	rs28732178	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	6p21.32	NR	rs28732178-?	NR	8E-11		6.496	NR z score decrease	Illumina [at least 830937] (imputed)	N
611	chr6_apd_hap1	3434635	3434636	rs3131283	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	PRRT1	rs3131283-T	NR	4E-16		0.0353753	[0.027-0.044] unit increase	Affymetrix [323123] (imputed)	N
611	chr6_apd_hap1	3435452	3435453	rs1053924	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:0_[M+H]1+/Phosphatidylethanolamine_35:0_[M+H]1+/Phosphatidate_37:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	6p21.32		rs1053924-T	NR	3E-10		0.0786544	[0.054-0.103] unit decrease	Affymetrix [87696910] (imputed)	N
611	chr6_apd_hap1	3437209	3437210	rs3096696	25987655	Fernandez CA	2015-05-18	Blood	Genome-wide analysis links NFATC2 with asparaginase hypersensitivity.	Asparaginase hypersensitivity in acute lymphoblastic leukemia	3,126 child cases	182 child cases	6p21.32	PPT2	rs3096696-A		4E-6		1.478		Affymetrix [NR]	N
611	chr6_apd_hap1	3442216	3442217	rs3134950	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:0_[M+H]1+/Phosphatidylethanolamine_35:0_[M+H]1+/Phosphatidate_37:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	6p21.32		rs3134950-C	NR	3E-16		0.100569	[0.076-0.125] unit decrease	Affymetrix [87696910] (imputed)	N
611	chr6_apd_hap1	3442216	3442217	rs3134950	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	6p21.32	EGFL8	rs3134950-A	0.622	1E-8		0.01510972	[0.0099-0.0203] unit decrease	Affymetrix [~ 11515000] (imputed)	N
611	chr6_apd_hap1	3442216	3442217	rs3134950	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	6p21.32	PPT2	rs3134950-A	0.624	1E-10		0.0079	[0.0055-0.0103] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
611	chr6_apd_hap1	3442216	3442217	rs3134950	24823311	Guan W	2014-05-13	Circ Cardiovasc Genet	Genome-wide association study of plasma N6 polyunsaturated fatty acids within the cohorts for heart and aging research in genomic epidemiology consortium.	Plasma omega-6 polyunsaturated fatty acid levels (adrenic acid)	8,631 European ancestry individuals	NA	6p21.32	AGPAT1, PPT2	rs3134950-A	0.625	6E-6		0.01	[NR] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
611	chr6_apd_hap1	3442216	3442217	rs3134950	23362303	Wu JH	2013-01-29	Circ Cardiovasc Genet	Genome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortium.	Oleic acid (18:1n-9) levels	8,961 European ancestry individuals		6p21.32	EGFL8, AGPAT1, PPT2	rs3134950-A	NR	1E-6		0.0945	unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
611	chr6_apd_hap1	3443133	3443134	rs9267812	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.32		rs9267812-C	0.865	1E-35				Affymetrix [10369434] (imputed)	N
611	chr6_apd_hap1	3443133	3443134	rs9267812	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.32		rs9267812-C	0.865	2E-29				Affymetrix [10369434] (imputed)	N
611	chr6_apd_hap1	3443133	3443134	rs9267812	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.32		rs9267812-C	0.865	7E-20				Affymetrix [10369434] (imputed)	N
611	chr6_apd_hap1	3443133	3443134	rs9267812	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.32		rs9267812-C	0.865	9E-41				Affymetrix [10369434] (imputed)	N
611	chr6_apd_hap1	3443133	3443134	rs9267812	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p21.32		rs9267812-C	0.865	8E-22				Affymetrix [10369434] (imputed)	N
611	chr6_apd_hap1	3443133	3443134	rs9267812	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	6p21.32	PPT2	rs9267812-T	0.135386	2E-6		0.021886	[0.013-0.031] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
611	chr6_apd_hap1	3443133	3443134	rs9267812	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	6p21.32	PPT2	rs9267812-T	0.132705	3E-9		0.022969	[0.015-0.031] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
611	chr6_apd_hap1	3443133	3443134	rs9267812	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs9267812-T	0.136	1E-30	(Rac GTPase-activating protein 1, RACGAP1.13587.10.3)	0.4	[0.32-0.48] unit decrease	Affymetrix [10572788] (imputed)	N
611	chr6_apd_hap1	3449250	3449251	rs3096697	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.32	EGFL8	rs3096697-T	0.2054	1E-41		2.58	[NR]	Illumina [242824]	N
611	chr6_apd_hap1	3451287	3451288	rs1061808	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for LDL particles	115,082 European ancestry individuals	NA	6p21.32		rs1061808-T	0.3719	6E-9		0.0242981	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
611	chr6_apd_hap1	3451287	3451288	rs1061808	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	6p21.32		rs1061808-G	NR	1E-22		0.0181	[0.015-0.022] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
611	chr6_apd_hap1	3451287	3451288	rs1061808	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:0_[M+H]1+/Phosphatidylethanolamine_35:0_[M+H]1+/Phosphatidate_37:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	6p21.32		rs1061808-T	NR	1E-15		0.0960224	[0.072-0.12] unit decrease	Affymetrix [87696910] (imputed)	N
611	chr6_apd_hap1	3451287	3451288	rs1061808	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	6p21.32	AGPAT1	rs1061808-T	0.3698	1E-23		0.25	[0.2-0.3] mmHg decrease	Affymetrix [NR] (imputed)	N
611	chr6_apd_hap1	3451287	3451288	rs1061808	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs1061808-G	0.631	8E-37	(Tenascin-X, TNXB.5698.60.3)	0.32	[0.28-0.36] unit increase	Affymetrix [10572788] (imputed)	N
611	chr6_apd_hap1	3451287	3451288	rs1061808	22359512	Demirkan A	2012-02-16	PLoS Genet	Genome-wide association study identifies novel loci associated with circulating phospho- and sphingolipid concentrations.	Phospholipid levels (plasma)	4,034 European ancestry individuals	NA	6p21.32	AGPAT1	rs1061808-?	NR	8E-10	(proportions)	0.9	[NR] % increase	Illumina [NR] (imputed)	N
611	chr6_apd_hap1	3453285	3453286	rs3130283	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Angina pectoris	30,025 European ancestry cases, 440,906 European ancestry controls, 14,007 East Asian ancestry cases, 145,158 East Asian ancestry controls	NA	6p21.32		rs3130283-C	NR	3E-11		0.0776	[0.055-0.101] unit increase	Affymetrix, Illumina [25842036] (imputed)	N
611	chr6_apd_hap1	3453285	3453286	rs3130283	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	6p21.32	NR	rs3130283-C	0.8533	6E-27		0.0617	[0.051-0.073] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
611	chr6_apd_hap1	3453357	3453358	rs114004994	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IFNAR1	5,357 Icelandic ancestry individuals	NA	6p21.32		rs114004994-C	0.04783	3E-14		0.323386	[0.24-0.41] unit decrease	Illumina [7506463] (imputed)	N
611	chr6_apd_hap1	3453357	3453358	rs114004994	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA	6p21.32	PPT2-EGFL8	rs114004994-?	NR	5E-9		1.80656	[NR] unit decrease	Affymetrix [NR] (imputed)	N
611	chr6_apd_hap1	3455227	3455228	rs3130284	25987655	Fernandez CA	2015-05-18	Blood	Genome-wide analysis links NFATC2 with asparaginase hypersensitivity.	Asparaginase hypersensitivity in acute lymphoblastic leukemia	3,126 child cases	182 child cases	6p21.32	AGPAT1	rs3130284-C	NR	7E-6		1.464		Affymetrix [NR]	N
611	chr6_apd_hap1	3460447	3460448	rs2269423	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:0_[M+H]1+/Phosphatidylethanolamine_35:0_[M+H]1+/Phosphatidate_37:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	6p21.32		rs2269423-A	NR	9E-17		0.0987433	[0.075-0.122] unit decrease	Affymetrix [87696910] (imputed)	N
611	chr6_apd_hap1	3461232	3461233	rs3134945	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.32	RNF5	rs3134945-T	0.2049	2E-40		2.54	[NR]	Illumina [242824]	N
611	chr6_apd_hap1	3461789	3461791	rs41315238	34782693	Yamada M	2021-11-15	Commun Biol	Genetic loci for lung function in Japanese adults with adjustment for exhaled nitric oxide levels as airway inflammation indicator.	Lung function (FEV1/FVC)	14,061 Japanese ancestry individuals	5,661 Japanese ancestry individuals	6p21.32		rs41315238-A	0.1513	7E-24		0.1542	[0.12-0.18] unit increase	Affymetrix [8587571] (imputed)	N
611	chr6_apd_hap1	3461897	3461898	rs41268928	26083729	Maruthur NM	2015-06-17	PLoS One	Genetics of Plasma Soluble Receptor for Advanced Glycation End-Products and Cardiovascular Outcomes in a Community-based Population: Results from the Atherosclerosis Risk in Communities Study.	Advanced glycation end-product levels	581 Black individuals, 1,737 European ancestry individuals	NA	6p21.32	RNF5, NOTCH4, AGER	rs41268928-C	0.04	3E-16	(EA)	0.69	unit decrease	Affymetrix [up to 9100000] (imputed)	N
611	chr6_apd_hap1	3462501	3462502	rs3134943	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.32	RNF5	rs3134943-T	NR	2E-7	(women)	0.0338184	[0.021-0.047] unit increase	Illumina [13520550] (imputed)	N
611	chr6_apd_hap1	3462771	3462772	rs1062070	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Waist circumference variance	347,158 European ancestry individuals	NA	6p21.32	RNF5	rs1062070-?	NR	7E-12				NR [5554549] (imputed)	N
611	chr6_apd_hap1	3462771	3462772	rs1062070	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Waist circumference	347,158 European ancestry individuals	NA	6p21.32	RNF5	rs1062070-?	NR	6E-10				NR [5554549] (imputed)	N
611	chr6_apd_hap1	3464000	3464001	rs2071288	26083729	Maruthur NM	2015-06-17	PLoS One	Genetics of Plasma Soluble Receptor for Advanced Glycation End-Products and Cardiovascular Outcomes in a Community-based Population: Results from the Atherosclerosis Risk in Communities Study.	Advanced glycation end-product levels	581 Black individuals, 1,737 European ancestry individuals	NA	6p21.32	AGER, RNF5, NOTCH4	rs2071288-T	0.1	2E-8	(Blacks)	0.56	unit decrease	Affymetrix [up to 9100000] (imputed)	N
611	chr6_apd_hap1	3464541	3464542	rs9391855	33766948	Zhu Z	2021-03-25	Eur Respir J	A large-scale genome-wide association analysis of lung function in the Chinese population identifies novel loci and highlights shared genetic etiology with obesity.	Lung function (FEV1/FVC)	100,285 Chinese ancestry individuals	NA	6p21.32		rs9391855-C	0.78	2E-22		0.053	unit decrease	Affymetrix [NR] (imputed)	N
611	chr6_apd_hap1	3466183	3466184	rs2070600	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein AGER	5,368 Icelandic ancestry individuals	NA	6p21.32		rs2070600-T	0.04774	1E-31		0.516865	[0.43-0.6] unit decrease	Illumina [7506463] (imputed)	N
611	chr6_apd_hap1	3466183	3466184	rs2070600	33909500	Moll M	2021-04-28	Am J Physiol Lung Cell Mol Physiol	A Systematic Analysis of Protein-altering Exonic Variants in Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease	up to 31,465 European ancestry cases, up to 203,688 European ancestry controls, up to 1,413 African ancestry cases, up to 6,080 African ancestry controls, up to 287 East Asian ancestry cases, up to 7,484 East Asian ancestry controls, up to 61 Hispanic cases, up to 613 Hispanic controls	NA	6p21.32	AGER	rs2070600-C	0.94	1E-16		1.19	[1.15 -1.25]	Illumina [at least 109036]	N
611	chr6_apd_hap1	3466183	3466184	rs2070600	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs2070600-T	NR	9E-12		1.2804097	[1.19-1.38]	Affymetrix [7846216] (imputed)	N
611	chr6_apd_hap1	3466183	3466184	rs2070600	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	6p21.32	AGER	rs2070600-C	0.94	1E-17		1.21	[1.15-1.26]	Affymetrix, Illumina [6224355] (imputed)	N
611	chr6_apd_hap1	3466183	3466184	rs2070600	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	6p21.32	AGER	rs2070600-T	0.0629	2E-45		0.073	[0.063-0.083] unit increase	Affymetrix [19819130] (imputed)	N
611	chr6_apd_hap1	3466183	3466184	rs2070600	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	6p21.32	AGER	rs2070600-T	0.0629	8E-15		0.0379	[0.028-0.048] unit decrease	Affymetrix [19819130] (imputed)	N
611	chr6_apd_hap1	3466183	3466184	rs2070600	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	6p21.32	AGER	rs2070600-T	0.0629	3E-189		0.1452	[0.14-0.15] unit increase	Affymetrix [19819130] (imputed)	N
611	chr6_apd_hap1	3466183	3466184	rs2070600	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	6p21.32	AGER	rs2070600-T	0.0629	5E-11		0.0318	[0.022-0.041] unit increase	Affymetrix [19819130] (imputed)	N
611	chr6_apd_hap1	3466183	3466184	rs2070600	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	AGER	rs2070600-T	0.067	4E-33	(Advanced glycosylation end product-specific receptor, soluble, AGER.4125.52.2)	0.57	[0.47-0.67] unit decrease	Affymetrix [10572788] (imputed)	N
611	chr6_apd_hap1	3466183	3466184	rs2070600	28369058	Folkersen L	2017-04-03	PLoS Genet	Mapping of 79 loci for 83 plasma protein biomarkers in cardiovascular disease.	Blood protein levels in cardiovascular risk	3,394 European ancestry individuals	2,639 individuals	6p21.32	AGER	rs2070600-T	0.04	5E-12		0.37	unit decrease	Illumina [5270624] (imputed)	N
611	chr6_apd_hap1	3466183	3466184	rs2070600	28166215	Hobbs BD	2017-02-06	Nat Genet	Genetic loci associated with chronic obstructive pulmonary disease overlap with loci for lung function and pulmonary fibrosis.	Chronic obstructive pulmonary disease	11,157 European ancestry cases, 36,699 European ancestry controls, 1,142 African American cases, 2,380 African American controls, 199 Korean ancestry cases, 6,741 Korean ancestry controls, 52 Hispanic cases, 548 Hispanic controls.	12,051 European ancestry cases, 11,111 European ancestry controls, 153 Korean ancestry cases, 205 Korean ancestry controls.	6p21.32	AGER	rs2070600-C	0.95	6E-10		1.24	[1.16-1.32]	Affymetrix, Illumina [NR] (imputed)	N
611	chr6_apd_hap1	3466183	3466184	rs2070600	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FEV1/FVC)	48,943 European ancestry individuals	57,176 European ancestry individuals, 38,199 individuals.	6p21.32	AGER	rs2070600-T	0.0634	3E-25		0.14	[0.11-0.17] unit increase	Affymetrix [27624732] (imputed)	N
611	chr6_apd_hap1	3466183	3466184	rs2070600	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	6p21.32	NR	rs2070600-?		3E-22	(AGER)	0.7091	[NR] unit decrease	Illumina [NR]	N
611	chr6_apd_hap1	3466183	3466184	rs2070600	26030696	Cho MH	2015-06-01	Am J Respir Crit Care Med	A Genome-Wide Association Study of Emphysema and Airway Quantitative Imaging Phenotypes.	Percentage gas trapping	3,243 European ancestry chronic obstructive pulmonary disease cases, 901 African American chronic obstructive pulmonary disease cases,  3,062 European ancestry controls, 2,132 African American controls	NA	6p21.32	AGER	rs2070600-T	NR	4E-9	(All)	0.23	[0.15-0.31] unit decrease	Illumina [6900000] (imputed)	N
611	chr6_apd_hap1	3466183	3466184	rs2070600	26030696	Cho MH	2015-06-01	Am J Respir Crit Care Med	A Genome-Wide Association Study of Emphysema and Airway Quantitative Imaging Phenotypes.	Emphysema imaging phenotypes	5,385 European ancestry chronic obstructive pulmonary disease cases, 901 African American chronic obstructive pulmonary disease cases, 3,613 European ancestry controls, 2,132 African American controls	NA	6p21.32	AGER	rs2070600-T	NR	5E-9	(%LAA-950, All)	0.14	[-0.07560-0.35560] unit decrease	Illumina [7600000] (imputed)	N
611	chr6_apd_hap1	3466183	3466184	rs2070600	23284291	Hancock DB	2012-12-20	PLoS Genet	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (smoking interaction)	50,047 European ancestry individuals	NA	6p21.32	AGER	rs2070600-?	NR	1E-21	(FEV1/FVC, Pack-years)			NR [~ 2500000] (imputed)	N
611	chr6_apd_hap1	3466183	3466184	rs2070600	20010835	Hancock DB	2009-12-13	Nat Genet	Meta-analyses of genome-wide association studies identify multiple loci associated with pulmonary function.	Pulmonary function	20,890 European ancestry individuals	16,178 European ancestry individuals	6p21.32	AGER, PPT2	rs2070600-T	0.04	3E-14	(FEV1/FVC)	1.0	[NR] % increase	Affymetrix, Illumina [2534500] (imputed)	N
611	chr6_apd_hap1	3466183	3466184	rs2070600	20010834	Repapi E	2009-12-13	Nat Genet	Genome-wide association study identifies five loci associated with lung function.	Pulmonary function	20,288 European ancestry individuals	up to 54,276 European ancestry individuals	6p21.32	AGER	rs2070600-T	0.06	3E-15	(FEV1/FVC)	0.088	[0.066-0.110] s.d. increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
611	chr6_apd_hap1	3467127	3467128	rs1800624	33766948	Zhu Z	2021-03-25	Eur Respir J	A large-scale genome-wide association analysis of lung function in the Chinese population identifies novel loci and highlights shared genetic etiology with obesity.	Lung function (FEV1/FVC)	100,285 Chinese ancestry individuals	NA	6p21.32		rs1800624-A	0.87	3E-9		0.039	unit increase	Affymetrix [NR] (imputed)	N
611	chr6_apd_hap1	3467182	3467183	rs1800625	26876947	Saito T	2016-02-11	Biol Psychiatry	Pharmacogenomic Study of Clozapine-Induced Agranulocytosis/Granulocytopenia in a Japanese Population.	Clozapine-induced agranulocytosis/granulocytopenia in treatment-resistant schizophrenia	50 Japanese ancestry cases, 2905 Japanese ancestry controls	NA	6p21.32	ZDHHC20P2, HCG25, HCG26, LST1, MICA, FKBPL, AGPAT1, PBX2, NOTCH4, C6orf10, MHC, HLA-X, HCP5, MSH5, C6orf26	rs1800625-G	0.084	3E-9		3.78	[3.34-4.22]	Illumina [522694]	N
611	chr6_apd_hap1	3467182	3467183	rs1800625	26546620	Xu CF	2015-11-06	Clin Cancer Res	HLA-B*57:01 Confers Susceptibility to Pazopanib-Associated Liver Injury in Patients with Cancer.	Response to Pazopanib in cancer (hepatotoxicity)	Up to 844 European ancestry cases, up to 325 Asian ancestry cases, up to 19 cases	Up to 811 European ancestry cases, up to 114 Asian ancestry cases, up to 77 cases	6p21.32	AGER	rs1800625-G	NR	8E-9	(Time to ALT>3 x upper limit of normal event)	1.8	[1.5-2.1]	Illumina [6736730] (imputed)	N
611	chr6_apd_hap1	3468078	3468079	rs201026476	32488134	Auckland K	2020-06-02	Sci Rep	The Human Leukocyte Antigen Locus and Rheumatic Heart Disease Susceptibility in South Asians and Europeans.	Rheumatic heart disease	510 Northern Indian cases, 344 Northern Indian controls, 162 Fijian Indian cases, 147 Fijian Indian controls	150 European ancestry cases, 1,309 European ancestry controls	6p21.32	PBX2	rs201026476-?		3E-10		1.81	[1.51-2.18]	Illumina [6925553] (imputed)	N
611	chr6_apd_hap1	3468143	3468144	rs169504	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	PBX2, XXbac-BPG300A18.13	rs169504-A	NR	4E-9		0.0216001	[0.014-0.029] unit decrease	Affymetrix [319769] (imputed)	N
611	chr6_apd_hap1	3468143	3468144	rs169504	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	PBX2, XXbac-BPG300A18.13	rs169504-A	NR	3E-12		0.0279533	[0.02-0.036] unit increase	Affymetrix [323123] (imputed)	N
611	chr6_apd_hap1	3468143	3468144	rs169504	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Anxiety	at least 23,606 European ancestry cases, at least 113,351 European ancestry controls	624,615 European ancestry cases, 1,310,854 European ancestry controls	6p21.32	PBX2, XXbac, BPG300A18.13	rs169504-C	0.1481	5E-28		0.03352553	[0.027-0.04] unit increase	NR [9417325] (imputed)	N
611	chr6_apd_hap1	3468143	3468144	rs169504	29899525	Klimentidis YC	2018-06-13	Int J Obes (Lond)	Genome-wide association study of habitual physical activity in over 377,000 UK Biobank participants identifies multiple variants including CADM2 and APOE.	Moderate to vigorous physical activity levels	377,234 European ancestry individuals	NA	6p21.32	PBX2	rs169504-C	0.81	5E-11	(model 2)	0.018	unit increase	Affymetrix [11800000] (imputed)	N
611	chr6_apd_hap1	3468143	3468144	rs169504	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p21.32	NR	rs169504-?	NR	5E-9		0.0694	[0.046-0.093] unit increase	Illumina [at least 560000] (imputed)	N
611	chr6_apd_hap1	3469022	3469023	rs204995	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	6p21.32	NR	rs204995-A	0.736056	3E-13		0.0272612	[0.02-0.034] unit increase	Affymetrix [16577424] (imputed)	N
611	chr6_apd_hap1	3469735	3469736	rs204994	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RACGAP1	5,360 Icelandic ancestry individuals	NA	6p21.32		rs204994-T	0.1627	4E-63		0.423554	[0.37-0.47] unit increase	Illumina [7506463] (imputed)	N
611	chr6_apd_hap1	3470318	3470319	rs204993	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Receptor for advanced glycosylation end products levels	21,758 European ancestry individuals	9,173 individuals	6p21.32		rs204993-A	0.74	1E-48		0.1449	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
611	chr6_apd_hap1	3470318	3470319	rs204993	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 142,336 Japanese ancestry controls	NA	6p21.32	PBX2	rs204993-?	NR	6E-9		0.0600478	[0.04-0.08] unit decrease	Illumina [19707525] (imputed)	N
611	chr6_apd_hap1	3470318	3470319	rs204993	21804548	Hirota T	2011-07-31	Nat Genet	Genome-wide association study identifies three new susceptibility loci for adult asthma in the Japanese population.	Asthma	1,532 Japanese ancestry cases, 3,304 Japanese ancestry controls	5,639 Japanese ancestry cases, 24,608 Japanese ancestry controls	6p21.32	PBX2	rs204993-A	0.58	2E-15		1.17	[1.12-1.21]	Illumina [458847]	N
611	chr6_apd_hap1	3472101	3472102	rs2856437	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cervical cancer	6,563 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs2856437-A	0.063203	1E-15		1.3032712	NR	Affymetrix [7846216] (imputed)	N
611	chr6_apd_hap1	3473056	3473057	rs176095	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Atopic dermatitis	2,079 European ancestry cases, 3,867 European ancestry controls	NA	6p21.32	GPSM3	rs176095-G	NR	3E-7		1.3020833	[1.18-1.44]	Affymetrix, Illumina, Perlegen [up to 5493100] (imputed)	N
611	chr6_apd_hap1	3473056	3473057	rs176095	23042114	Hirota T	2012-10-07	Nat Genet	Genome-wide association study identifies eight new susceptibility loci for atopic dermatitis in the Japanese population.	Atopic dermatitis	1,472 Japanese ancestry cases, 7,971 Japanese ancestry controls	1,856 Japanese ancestry cases, 7,021 Japanese ancestry controls	6p21.32	GPSM3	rs176095-T	0.81	8E-20		1.4	[1.30-1.51]	Illumina [606164]	N
611	chr6_apd_hap1	3474693	3474694	rs3134605	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	GPSM3	rs3134605-C	NR	8E-9		0.0195758	[0.013-0.026] unit decrease	Affymetrix [319769] (imputed)	N
611	chr6_apd_hap1	3474693	3474694	rs3134605	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	GPSM3	rs3134605-C	NR	3E-8		0.0188346	[0.012-0.025] unit decrease	Affymetrix [319769] (imputed)	N
611	chr6_apd_hap1	3474693	3474694	rs3134605	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	GPSM3	rs3134605-C	NR	1E-8		0.0196385	[0.013-0.026] unit decrease	Affymetrix [321169] (imputed)	N
611	chr6_apd_hap1	3474693	3474694	rs3134605	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	6p21.32	GPSM3	rs3134605-T	0.7974	7E-17		0.0033	[0.0025-0.0041] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
611	chr6_apd_hap1	3474890	3474891	rs2269420	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Pancreatic cancer	768 White British ancestry cases, 264,559 White British ancestry controls	NA	6p21.32		rs2269420-?	NR	5E-6		550.195	[547.48-552.91]	NR [663102]	N
611	chr6_apd_hap1	3474890	3474891	rs2269420	28031287	Sasayama D	2016-11-26	Hum Mol Genet	Genome-wide quantitative trait loci mapping of the human cerebrospinal fluid proteome.	Cerebrospinal fluid biomarker levels	133 Japanese ancestry individuals.	NA	6p21.32	NR	rs2269420-?	NR	3E-9	(Complement factor B)			Illumina [514227]	N
611	chr6_apd_hap1	3476133	3476134	rs3132940	32534018	Liu X	2020-06-10	Brain Behav Immun	Genetic factors underlying the bidirectional relationship between autoimmune and mental disorders - findings from a Danish population-based study.	Autoimmune traits	1,383 Danish ancestry cases, 62,656 Danish ancestry controls	NA	6p21.32	NR	rs3132940-T	0.15	1E-15		0.62	[0.55-0.70]	NR [7721839] (imputed)	N
611	chr6_apd_hap1	3476133	3476134	rs3132940	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (non-Lofgren's syndrome without extrapulmonary manifestations)	451 Swedish ancestry cases, 2,086 Swedish ancestry controls	NA	6p21.32	GPSM3, NOTCH4, AGER, MICB, NFKBIL1, LTA, NCR3, AIF1, TNXB, CREBL1, FKBPL, PRRT1	rs3132940-A	0.203	7E-6		1.531	[1.282-1.829]	Illumina [118177]	N
611	chr6_apd_hap1	3476167	3476168	rs204990	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Scarlet fever	6,812 European ancestry cases, 113,837 European ancestry controls	NA	6p21.32	NR	rs204990-?	NR	7E-9		0.1298	[0.086-0.173] unit decrease	Illumina [at least 560000] (imputed)	N
611	chr6_apd_hap1	3478485	3478486	rs13215567	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6p21.32	GPSM3, NOTCH4	rs13215567-A	0.049	1E-6	(IGFBP-3 )	0.03	[NR] ng/mL increase	Illumina [899892]	N
611	chr6_apd_hap1	3480181	3480182	rs2071278	23028341	Yang X	2012-09-13	PLoS Genet	Genome-wide association study for serum complement C3 and C4 levels in healthy Chinese subjects.	Complement C3 and C4 levels	1,999 Han Chinese ancestry male individuals	1,496 Han Chinese ancestry male individuals	6p21.32	HLA-DRA	rs2071278-G	0.27	4E-72	(Serum level of C4)	0.13	[0.11-0.15] g/L decrease	Illumina [1940245] (imputed)	N
611	chr6_apd_hap1	3481122	3481123	rs8192575	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	NOTCH4	rs8192575-G	NR	3E-14		0.0413468	[0.031-0.052] unit increase	Affymetrix [319769] (imputed)	N
611	chr6_apd_hap1	3481122	3481123	rs8192575	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	NOTCH4	rs8192575-G	NR	1E-14		0.0418274	[0.031-0.052] unit increase	Affymetrix [319769] (imputed)	N
611	chr6_apd_hap1	3483520	3483521	rs3134942	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.32	NOTCH4, GPSM3	rs3134942-T	0.1076459	1E-16	(EA, MHC class I polypeptide-related sequence A)	0.5791	[0.44-0.71] unit increase	Affymetrix [509946]	N
611	chr6_apd_hap1	3485156	3485157	rs9267822	33941608	Khan A	2021-05-03	J Am Soc Nephrol	Medical Records-Based Genetic Studies of the Complement System.	Complement C4 levels	3,247 European ancestry individuals, 600 African ancestry individuals, 151 East Asian ancestry individuals	NA	6p21.32	C4	rs9267822-C	0.05	6E-7	(AA)	0.64	[0.40-0.87] unit increase	NR [NR] (imputed)	N
611	chr6_apd_hap1	3485156	3485157	rs9267822	33941608	Khan A	2021-05-03	J Am Soc Nephrol	Medical Records-Based Genetic Studies of the Complement System.	Complement C4 levels	3,247 European ancestry individuals, 600 African ancestry individuals, 151 East Asian ancestry individuals	NA	6p21.32	C4	rs9267822-C	0.02	6E-17		0.65	[0.51-0.78] unit increase	NR [NR] (imputed)	N
611	chr6_apd_hap1	3485156	3485157	rs9267822	33941608	Khan A	2021-05-03	J Am Soc Nephrol	Medical Records-Based Genetic Studies of the Complement System.	Complement C4 levels	3,247 European ancestry individuals, 600 African ancestry individuals, 151 East Asian ancestry individuals	NA	6p21.32	C4	rs9267822-C	0.01	7E-9	(EA)	0.61	[0.41-0.80] unit increase	NR [NR] (imputed)	N
611	chr6_apd_hap1	3485823	3485824	rs3132935	23894747	Aberg KA	2013-02-01	JAMA Psychiatry	A comprehensive family-based replication study of schizophrenia genes.	Schizophrenia	11,185 European ancestry cases, 10,768 European ancestry controls	1,262 African American ancestry individuals, 2,740 European ancestry individuals, 2,296 Asian ancestry individuals	6p21.32	NOTCH4	rs3132935-?	0.82	5E-7	(EA)	1.25	[NR]	NR [1085772] (imputed)	N
611	chr6_apd_hap1	3485823	3485824	rs3132935	23894747	Aberg KA	2013-02-01	JAMA Psychiatry	A comprehensive family-based replication study of schizophrenia genes.	Schizophrenia	11,185 European ancestry cases, 10,768 European ancestry controls	1,262 African American ancestry individuals, 2,740 European ancestry individuals, 2,296 Asian ancestry individuals	6p21.32	NOTCH4	rs3132935-?	0.82	3E-7		1.25	[NR]	NR [1085772] (imputed)	N
611	chr6_apd_hap1	3486431	3486432	rs2071277	22694956	Cipriani V	2012-06-13	Hum Mol Genet	Genome-wide association study of age-related macular degeneration identifies associated variants in the TNXB-FKBPL-NOTCH4 region of chromosome 6p21.3.	Age-related macular degeneration	893 European ancestry cases, 2,199 European ancestry controls	1,411 European ancestry cases, 1,431 European ancestry controls	6p21.32	NOTCH4	rs2071277-C	0.219	2E-11		1.3	[1.20-1.41]	Illumina [2272849] (imputed)	N
611	chr6_apd_hap1	3487741	3487742	rs3131296	19571808	Stefansson H	2009-07-01	Nature	Common variants conferring risk of schizophrenia.	Schizophrenia	2,663 European ancestry cases, 13,498 European ancestry controls	10,282 European ancestry cases, 21,093 European ancestry controls	6p21.32	MHC, NOTCH4	rs3131296-G	0.87	2E-10		1.19	[NR]	Illumina [314868]	N
611	chr6_apd_hap1	3487986	3487987	rs9267823	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6p21.32	NOTCH4	rs9267823-C	0.252	3E-12		0.018297182	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
611	chr6_apd_hap1	3488348	3488349	rs138753323	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.32		rs138753323-C	0.02776400000000001	7E-13		1.0961492	[1.06-1.12]	Affymetrix, Illumina [9851866] (imputed)	N
611	chr6_apd_hap1	3488797	3488798	rs2849017	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	6p21.32	NOTCH4	rs2849017-G	0.0713240000000001	2E-10		0.027348002	[0.019-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
611	chr6_apd_hap1	3488797	3488798	rs2849017	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	6p21.32	NOTCH4	rs2849017-G	0.071334	5E-15		0.033472747	[0.025-0.042] unit decrease	Affymetrix [93095623] (imputed)	N
611	chr6_apd_hap1	3489706	3489707	rs3130290	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of saturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	6p21.32		rs3130290-T	0.396568	2E-14		0.0317416	[0.024-0.04] unit decrease	NR [11722792] (imputed)	N
611	chr6_apd_hap1	3490954	3490955	rs206017	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:0_[M+H]1+/Phosphatidylethanolamine_35:0_[M+H]1+/Phosphatidate_37:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	6p21.32		rs206017-G	NR	2E-10		0.0746241	[0.052-0.098] unit decrease	Affymetrix [87696910] (imputed)	N
612	chr6_apd_hap1	3594365	3594366	rs6934429	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	C6orf10	rs6934429-T	NR	9E-14		0.0248579	[0.018-0.031] unit decrease	Affymetrix [319769] (imputed)	N
612	chr6_apd_hap1	3594365	3594366	rs6934429	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs6934429-T	NR	7E-13		0.0239747	[0.017-0.031] unit decrease	Affymetrix [319769] (imputed)	N
612	chr6_apd_hap1	3595334	3595335	rs9268208	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	C6orf10	rs9268208-C	NR	8E-9		0.0246281	[0.016-0.033] unit increase	Affymetrix [321016] (imputed)	N
612	chr6_apd_hap1	3595759	3595760	rs74209703	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.32	NR	rs74209703-?	NR	5E-10				Affymetrix [~ 8270000] (imputed)	N
612	chr6_apd_hap1	3596155	3596156	rs28366179	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	6p21.32	C6orf10	rs28366179-A	0.1646	3E-21		0.04564547	[0.036-0.055] unit increase	Affymetrix [~ 2500000] (imputed)	N
612	chr6_apd_hap1	3596811	3596812	rs2395141	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs2395141-?	NR	3E-10				Affymetrix [~ 8270000] (imputed)	N
612	chr6_apd_hap1	3597576	3597577	rs6910071	20453842	Stahl EA	2010-05-09	Nat Genet	Genome-wide association study meta-analysis identifies seven new rheumatoid arthritis risk loci.	Rheumatoid arthritis	5,539 European ancestry cases, 20,169 European ancestry controls	6,768 European ancestry cases, 8,806 European ancestry controls	6p21.32	HLA-DRB1	rs6910071-G	0.22	1E-299		2.88	[2.73-3.03]	Affymetrix, Illumina [~ 2716259] (imputed)	N
612	chr6_apd_hap1	3601407	3601408	rs2022542	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	6p21.32	C6orf10	rs2022542-G	0.0582	2E-52		0.1169749	[0.1-0.13] unit increase	Affymetrix [~ 2500000] (imputed)	N
612	chr6_apd_hap1	3602050	3602051	rs2746115	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	6p21.32	NR	rs2746115-?	NR	8E-9				Affymetrix [~ 8270000] (imputed)	N
612	chr6_apd_hap1	3608306	3608307	rs2395143	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	C6orf10, HNRNPA1P2	rs2395143-G	NR	2E-10		0.0215226	[0.015-0.028] unit decrease	Affymetrix [323123] (imputed)	N
612	chr6_apd_hap1	3610494	3610495	rs9268249	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	C6orf10	rs9268249-A	NR	5E-8		0.015398	[0.0099-0.0209] unit decrease	Affymetrix [321016] (imputed)	N
612	chr6_apd_hap1	3610494	3610495	rs9268249	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	C6orf10	rs9268249-A	NR	7E-15		0.0239145	[0.018-0.03] unit decrease	Affymetrix [323123] (imputed)	N
612	chr6_apd_hap1	3610624	3610625	rs6913664	34785669	Grosche S	2021-11-16	Nat Commun	Rare variant analysis in eczema identifies exonic variants in DUSP1, NOTCH4 and SLC9A4.	Eczema	20,016 European ancestry cases, 380,433 European ancestry controls	NA	6p21.32		rs6913664-T	0.4549	1E-15		0.91		Affymetrix, Illumina [9397031] (imputed)	N
612	chr6_apd_hap1	3610628	3610629	rs9268251	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	C6orf10	rs9268251-A	NR	7E-11		0.0216525	[0.015-0.028] unit decrease	Affymetrix [319769] (imputed)	N
612	chr6_apd_hap1	3610628	3610629	rs9268251	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs9268251-A	NR	3E-10		0.0208763	[0.014-0.027] unit decrease	Affymetrix [319769] (imputed)	N
612	chr6_apd_hap1	3610628	3610629	rs9268251	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs9268251-A	NR	5E-10		0.0208582	[0.014-0.027] unit decrease	Affymetrix [321169] (imputed)	N
612	chr6_apd_hap1	3614192	3614193	rs145396511	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs145396511-T	0.989	5E-9	(conditional)	1.574	[1.42-1.72]	Illumina [11270530] (imputed)	N
612	chr6_apd_hap1	3615543	3615544	rs3129960	33106546	Johnson TA	2020-10-26	J Hum Genet	Association of an IGHV3-66 gene variant with Kawasaki disease.	Kawasaki disease	1,276 East Asian ancestry cases, 5,086 East Asian ancestry controls	2,152 East Asian ancestry cases, 2,751 East Asian ancestry controls	6p21.32	C6orf10, LOC101929163	rs3129960-G	NR	7E-13		0.73	[0.67-0.80]	Affymetrix, Illumina [6265045] (imputed)	N
612	chr6_apd_hap1	3616160	3616161	rs115378818	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.32	C6orf10	rs115378818-T	0.0143760000000001	3E-49		0.16935384	[0.15-0.19] unit decrease	Affymetrix [93095623] (imputed)	N
612	chr6_apd_hap1	3617115	3617116	rs1265757	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p21.32	C6orf10	rs1265757-A	0.343	1E-33				Illumina [118177]	N
612	chr6_apd_hap1	3619970	3619971	rs78546106	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs78546106-?	NR	6E-11				Affymetrix [~ 8270000] (imputed)	N
612	chr6_apd_hap1	3620390	3620391	rs926592	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p21.32	TSBP1	rs926592-C	0.658	6E-6		0.059	[0.034-0.084] unit increase	Affymetrix, Illumina [7374092] (imputed)	N
612	chr6_apd_hap1	3620711	3620712	rs3129900	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (multivariate analysis)	477,968 European ancestry individuals	NA	6p21.32	C6orf10	rs3129900-G	0.171	7E-17		0.05	[0.038-0.062] unit decrease	NR [NR] (imputed)	N
612	chr6_apd_hap1	3620711	3620712	rs3129900	20639878	Singer JB	2010-07-18	Nat Genet	A genome-wide study identifies HLA alleles associated with lumiracoxib-related liver injury.	Lumiracoxib-related liver injury	31 European ancestry cases, 3 Hispanic cases, 1 case, 176 European, Hispanic and other ancestry controls	79 European ancestry cases, 16 Hispanic ancestry cases, 1 case, 405 European, Hispanic and other ancestry controls	6p21.32	HLA-DRB1	rs3129900-?	0.105	7E-25		7.5	[5.0-11.3]	Affymetrix [682386]	N
612	chr6_apd_hap1	3620822	3620823	rs9368716	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	C6orf10	rs9368716-A	NR	4E-17		0.0234977	[0.018-0.029] unit increase	Affymetrix [319769] (imputed)	N
612	chr6_apd_hap1	3620822	3620823	rs9368716	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs9368716-A	NR	1E-16		0.0231755	[0.018-0.029] unit increase	Affymetrix [319769] (imputed)	N
612	chr6_apd_hap1	3620822	3620823	rs9368716	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs9368716-A	NR	4E-9		0.0166452	[0.011-0.022] unit increase	Affymetrix [321114] (imputed)	N
612	chr6_apd_hap1	3620822	3620823	rs9368716	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs9368716-A	NR	4E-17		0.023828	[0.018-0.029] unit increase	Affymetrix [321169] (imputed)	N
612	chr6_apd_hap1	3623637	3623638	rs9469099	23042114	Hirota T	2012-10-07	Nat Genet	Genome-wide association study identifies eight new susceptibility loci for atopic dermatitis in the Japanese population.	Atopic dermatitis	1,472 Japanese ancestry cases, 7,971 Japanese ancestry controls	1,856 Japanese ancestry cases, 7,021 Japanese ancestry controls	6p21.32	C6orf10	rs9469099-G	0.909	5E-19		1.61	[1.44-1.80]	Illumina [606164]	N
612	chr6_apd_hap1	3625593	3625594	rs2849018	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Diastolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	6p21.32	C6orf10	rs2849018-C	0.6531	2E-17		0.3443	[0.26-0.42] mmHg increase	Affymetrix [NR] (imputed)	N
612	chr6_apd_hap1	3626189	3626190	rs3132954	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.32	NR	rs3132954-?	NR	3E-11				Affymetrix [~ 8270000] (imputed)	N
612	chr6_apd_hap1	3628365	3628366	rs1265764	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	C6orf10	rs1265764-A	NR	2E-8		0.0409576	[0.027-0.055] unit decrease	Affymetrix [323858] (imputed)	N
612	chr6_apd_hap1	3628365	3628366	rs1265764	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	C6orf10	rs1265764-A	NR	1E-8		0.0407492	[0.027-0.055] unit increase	Affymetrix [323123] (imputed)	N
612	chr6_apd_hap1	3628365	3628366	rs1265764	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.32	C6orf10, XXbac-BPG154L12.5	rs1265764-A	0.0414	7E-7		0.1177	[0.071-0.164] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
612	chr6_apd_hap1	3629633	3629634	rs78461719	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	6p21.32	NR	rs78461719-T	0.03388599999999997	1E-8		0.0314455	[0.022-0.041] unit increase	Affymetrix [16578495] (imputed)	N
612	chr6_apd_hap1	3630107	3630108	rs910049	23321320	Urabe Y	2013-01-12	J Hepatol	A genome-wide association study of HCV-induced liver cirrhosis in the Japanese population identifies novel susceptibility loci at the MHC region.	Hepatitis C induced liver cirrhosis	682 Japanese ancestry cases, 1,045 Japanese ancestry controls	936 Japanese ancestry cases, 3,809 Japanese ancestry controls	6p21.32	C6orf10	rs910049-A	0.142	9E-11		1.46	[1.28-1.62]	Illumina [431618]	N
612	chr6_apd_hap1	3634013	3634014	rs9268301	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6p21.32	C6orf10	rs9268301-A	0.438	2E-6	(Diet carbohydrate )	0.03	[NR] g/d increase	Illumina [899892]	N
612	chr6_apd_hap1	3635845	3635846	rs368529276	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs368529276-A	0.961	4E-19		2.522	[2.32-2.72]	Illumina [11270530] (imputed)	N
612	chr6_apd_hap1	3635926	3635927	rs2395148	18576341	Behrens EM	2008-06-24	Arthritis Rheum	Association of the TRAF1-C5 locus on chromosome 9 with juvenile idiopathic arthritis.	Arthritis (juvenile idiopathic)	67 European ancestry cases, 1,952 European ancestry controls, 63 cases	NA	6p21.32	HLA-DRB1	rs2395148-?	NR	2E-10		5.37	[3.02-9.56]	Illumina [524684]	N
612	chr6_apd_hap1	3643523	3643524	rs137931178	26959717	Nicoletti P	2016-03-09	Pharmacogenet Genomics	HLA-DRB1*16: 01-DQB1*05: 02 is a novel genetic risk factor for flupirtine-induced liver injury.	Drug-induced liver injury	620 European ancestry cases, 10,588 European ancestry controls	NA	6p21.32	MHC	rs137931178-?	NR	7E-6		79.0	[11.72-533.7]	Illumina [NR] (imputed)	N
612	chr6_apd_hap1	3649592	3649593	rs2143462	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	C6orf10	rs2143462-A	NR	7E-12		0.0268233	[0.019-0.034] unit decrease	Affymetrix [323858] (imputed)	N
612	chr6_apd_hap1	3649592	3649593	rs2143462	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	C6orf10	rs2143462-A	NR	6E-11		0.0256594	[0.018-0.033] unit decrease	Affymetrix [127266] (imputed)	N
612	chr6_apd_hap1	3650578	3650579	rs3129934	22457343	Martinelli-Boneschi F	2012-03-28	Mult Scler	A genome-wide association study in progressive multiple sclerosis.	Multiple sclerosis	197 European ancestry cases, 234 European ancestry controls	379 European ancestry cases, 398 European ancestry controls	6p21.32	C6orf10	rs3129934-T	0.10	7E-16		2.34	[1.90-2.87]	Affymetrix [277866]	N
612	chr6_apd_hap1	3650578	3650579	rs3129934	18941528	Comabella M	2008-10-22	PLoS One	Identification of a novel risk locus for multiple sclerosis at 13q31.3 by a pooled genome-wide scan of 500,000 single nucleotide polymorphisms.	Multiple sclerosis	242 European ancestry cases, 242 European ancestry controls	553 European ancestry cases, 1,033 European ancestry controls	6p21.32	HLA-DRB1	rs3129934-T	NR	9E-11		3.3	[2.3-4.9]	Affymetrix [428867]	N
612	chr6_apd_hap1	3650935	3650936	rs113857285	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Celiac disease (PheCode 557.1)	1,036 European ancestry cases, 455,312 European ancestry controls	NA	6p21.32		rs113857285-A	0.002145	8E-10		4.04	[2.75-5.33] unit increase	NR [11842647] (imputed)	N
612	chr6_apd_hap1	3651156	3651157	rs3129939	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.32	c6orf10	rs3129939-G	0.1772	2E-40		2.6	[NR]	Illumina [242824]	N
612	chr6_apd_hap1	3652023	3652024	rs2273017	21900946	Nakabayashi K	2011-09-08	J Hum Genet	Identification of independent risk loci for Graves' disease within the MHC in the Japanese population.	Graves' disease	1,119 Japanese ancestry cases, 2,718 Japanese ancestry controls	432 Japanese ancestry cases, 1,157 Japanese ancestry controls	6p21.32	MHC	rs2273017-A	0.51	2E-22		1.53	[1.40-1.66]	Perlegen [268068]	N
612	chr6_apd_hap1	3652342	3652354	rs11275478	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atopic dermatitis	4,296 East Asian ancestry cases, 163,807 East Asian ancestry controls	NA	6p21.32		rs11275478-A	0.218070297	4E-17		0.25364324	[0.19-0.31] unit decrease	Illumina [13428180] (imputed)	N
612	chr6_apd_hap1	3652665	3652666	rs3129942	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	6p21.32	C6orf10	rs3129942-G	0.742436	3E-18		0.013944	[0.011-0.017] unit decrease	Affymetrix [12370749]	N
612	chr6_apd_hap1	3653080	3653081	rs3129943	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cirrhosis	2,551 East Asian ancestry cases, 176,175 East Asian ancestry controls	NA	6p21.32		rs3129943-G	0.365494247	2E-11		0.19759746	[0.14-0.26] unit increase	Illumina [13429980] (imputed)	N
612	chr6_apd_hap1	3653080	3653081	rs3129943	21804548	Hirota T	2011-07-31	Nat Genet	Genome-wide association study identifies three new susceptibility loci for adult asthma in the Japanese population.	Asthma	1,532 Japanese ancestry cases, 3,304 Japanese ancestry controls	5,639 Japanese ancestry cases, 24,608 Japanese ancestry controls	6p21.32	C6orf10	rs3129943-T	0.62	3E-15		1.17	[1.12-1.21]	Illumina [458847]	N
612	chr6_apd_hap1	3653370	3653371	rs2073044	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	C6orf10	rs2073044-T	NR	3E-16		0.0261214	[0.02-0.032] unit increase	Affymetrix [319769] (imputed)	N
612	chr6_apd_hap1	3653370	3653371	rs2073044	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs2073044-T	NR	5E-16		0.0258492	[0.02-0.032] unit increase	Affymetrix [319769] (imputed)	N
612	chr6_apd_hap1	3653370	3653371	rs2073044	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs2073044-T	NR	8E-14		0.0241214	[0.018-0.03] unit increase	Affymetrix [321169] (imputed)	N
612	chr6_apd_hap1	3653460	3653461	rs2050190	34116867	Tanaka N	2021-06-02	J Allergy Clin Immunol	Eight novel susceptibility loci and putative causal variants in atopic dermatitis.	Atopic dermatitis	2,597 Japanese ancestry cases, 110,504 Japanese ancestry controls, 25,685 European ancestry cases, 76,768 European ancestry controls	NA	6p21.32		rs2050190-?	NR	4E-13		0.8	[0.75-0.85]	Illumina [5170515] (imputed)	N
612	chr6_apd_hap1	3653460	3653461	rs2050190	22703881	Tang W	2012-06-14	Am J Hum Genet	Genetic associations for activated partial thromboplastin time and prothrombin time, their gene expression profiles, and risk of coronary artery disease.	Activated partial thromboplastin time	9,240 European ancestry individuals	2611 European ancestry individuals	6p21.32	C6orf10	rs2050190-A	NR	7E-7		0.2528	[0.17-0.34] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
612	chr6_apd_hap1	3654031	3654032	rs2050189	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	C6orf10	rs2050189-C	NR	2E-8		0.0208018	[0.014-0.028] unit decrease	Affymetrix [323858] (imputed)	N
612	chr6_apd_hap1	3654168	3654169	rs9501618	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs9501618-C	0.016	9E-26	(Complement C4, C4A.C4B.4481.34.2)	1.03	[0.83-1.23] unit increase	Affymetrix [10572788] (imputed)	N
612	chr6_apd_hap1	3654224	3654225	rs6913309	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Strep throat	52,487 European ancestry cases, 22,017 European ancestry controls	NA	6p21.32	NR	rs6913309-?	NR	5E-7		0.0308	[0.019-0.043] unit decrease	Illumina [at least 560000] (imputed)	N
612	chr6_apd_hap1	3654224	3654225	rs6913309	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.32	Intergenic	rs6913309-T	NR	4E-6	(men)	0.0229829	[0.013-0.033] unit increase	Illumina [13520550] (imputed)	N
612	chr6_apd_hap1	3654281	3654282	rs2050188	31375628	Tengvall K	2019-08-02	Proc Natl Acad Sci U S A	Molecular mimicry between Anoctamin 2 and Epstein-Barr virus nuclear antigen 1 associates with multiple sclerosis risk.	Anti-anoctamin 2 antibody levels	11,936 European ancestry individuals	NA	6p21.32	NR	rs2050188-G	NR	2E-14		0.07	[0.046-0.094] unit increase	Illumina [615763]	N
612	chr6_apd_hap1	3654281	3654282	rs2050188	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	6p21.32	HLA-DRB5, C6orf10	rs2050188-T	0.673	9E-6	(EA)	0.0509	[0.028-0.073] unit increase	Affymetrix, Illumina [NR] (imputed)	N
612	chr6_apd_hap1	3654281	3654282	rs2050188	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	6p21.32	HLA-DRB5, C6orf10	rs2050188-T	0.67	8E-9		1.06	[1.04-1.08]	Affymetrix, Illumina [NR] (imputed)	N
612	chr6_apd_hap1	3654309	3654310	rs6913471	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	C6orf10	rs6913471-A	NR	1E-8		0.0182835	[0.012-0.025] unit decrease	Affymetrix [323123] (imputed)	N
612	chr6_apd_hap1	3654490	3654491	rs2281276	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	C6orf10	rs2281276-G	NR	2E-11		0.0210706	[0.015-0.027] unit increase	Affymetrix [323858] (imputed)	N
612	chr6_apd_hap1	3654490	3654491	rs2281276	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	C6orf10	rs2281276-G	NR	2E-10		0.0199503	[0.014-0.026] unit increase	Affymetrix [127266] (imputed)	N
612	chr6_apd_hap1	3654490	3654491	rs2281276	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	C6orf10	rs2281276-G	NR	4E-15		0.0241531	[0.018-0.03] unit decrease	Affymetrix [323123] (imputed)	N
612	chr6_apd_hap1	3654490	3654491	rs2281276	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	6p21.32	C6orf10	rs2281276-G	0.472805	6E-12		0.01778208	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
612	chr6_apd_hap1	3655256	3655257	rs3129944	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs3129944-G	NR	4E-10		0.0217534	[0.015-0.029] unit decrease	Affymetrix [321169] (imputed)	N
612	chr6_apd_hap1	3655592	3655593	rs9378202	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	C6orf10	rs9378202-C	NR	3E-9		0.0239944	[0.016-0.032] unit decrease	Affymetrix [323123] (imputed)	N
612	chr6_apd_hap1	3655737	3655738	rs9268402	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	C6orf10	rs9268402-G	NR	2E-17		0.0239092	[0.018-0.029] unit decrease	Affymetrix [319769] (imputed)	N
612	chr6_apd_hap1	3655737	3655738	rs9268402	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs9268402-G	NR	4E-17		0.0236172	[0.018-0.029] unit decrease	Affymetrix [319769] (imputed)	N
612	chr6_apd_hap1	3655737	3655738	rs9268402	22751097	Lu X	2012-07-01	Nat Genet	Genome-wide association study in Han Chinese identifies four new susceptibility loci for coronary artery disease.	Coronary heart disease	1,515 Han Chinese ancestry cases, 5,019 Han Chinese ancestry controls	15,460 Han Chinese ancestry cases, 11,472 Han Chinese ancestry controls	6p21.32	BTNL2, C6orf10	rs9268402-G	0.59	3E-15		1.16	[1.12-1.20]	Affymetrix [~ 2200000] (imputed)	N
612	chr6_apd_hap1	3655782	3655783	rs9391858	31566214	Kulminski AM	2019-09-30	J Gerontol A Biol Sci Med Sci	Quantitative and qualitative role of antagonistic heterogeneity in genetics of blood lipids.	Total cholesterol levels	29,902 European ancestry individuals	NA			rs9391858-G	0.14	3E-8		2.4	[1.56-3.24] unit increase	Affymetrix, Illumina [up to 2500000] (imputed)	N
612	chr6_apd_hap1	3656501	3656502	rs73729220	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.32	NR	rs73729220-G	0.015	6E-7	(women)	0.670827	[0.41-0.93] unit increase	Affymetrix [up to 8900000] (imputed)	N
612	chr6_apd_hap1	3656501	3656502	rs73729220	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.32	NR	rs73729220-G	0.015	4E-9		0.429629	[0.29-0.57] unit increase	Affymetrix [up to 8900000] (imputed)	N
612	chr6_apd_hap1	3656919	3656920	rs3129945	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p21.32	NR	rs3129945-?	NR	3E-6		4.704	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
612	chr6_apd_hap1	3657751	3657752	rs3117106	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	C6orf10	rs3117106-C	NR	4E-11		0.0274536	[0.019-0.036] unit increase	Affymetrix [323123] (imputed)	N
612	chr6_apd_hap1	3659468	3659469	rs12528797	28107422	de Vries PS	2017-01-20	PLoS One	Comparison of HapMap and 1000 Genomes Reference Panels in a Large-Scale Genome-Wide Association Study.	Fibrinogen levels	91,953 European ancestry individuals (imputed to HapMap)		6p21.32	C6orf10, HCG23	rs12528797-?	NR	9E-9		0.0095	unit increase	Affymetrix, Illumina [2749429] (imputed)	N
612	chr6_apd_hap1	3659665	3659666	rs7758128	21326295	Jin Y	2011-02-17	J Invest Dermatol	Genome-wide analysis identifies a quantitative trait locus in the MHC class II region associated with generalized vitiligo age of onset.	Vitiligo	1,339 European ancestry cases	677 European ancestry cases	6p21.32	BTNL2, C6orf10	rs7758128-A	0.06	8E-11				Illumina [520460]	N
612	chr6_apd_hap1	3659977	3659978	rs2395153	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs2395153-G	NR	9E-12		0.0195615	[0.014-0.025] unit increase	Affymetrix [321114] (imputed)	N
612	chr6_apd_hap1	3659977	3659978	rs2395153	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs2395153-G	NR	3E-19		0.0258131	[0.02-0.031] unit increase	Affymetrix [321169] (imputed)	N
612	chr6_apd_hap1	3660071	3660072	rs2894254	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	6p21.32	C6orf10, BTNL2	rs2894254-T	NR	1E-13		0.238275	[0.18-0.3] unit increase	Illumina [at least 950000] (imputed)	N
612	chr6_apd_hap1	3660071	3660072	rs2894254	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.32	NOTCH4, C6orf10	rs2894254-T	0.8879	1E-7	(EA)	0.0337	[0.021-0.046] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
612	chr6_apd_hap1	3660071	3660072	rs2894254	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.32	BTNL2	rs2894254-T	0.8879	3E-9	(EA, men)	0.0557	[0.037-0.074] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
612	chr6_apd_hap1	3660071	3660072	rs2894254	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6p21.32	BTNL2	rs2894254-T	0.888	6E-8	(men)	0.058	[0.037-0.079] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
612	chr6_apd_hap1	3660071	3660072	rs2894254	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6p21.32	BTNL2	rs2894254-T	0.888	6E-8	(EA, men)	0.058	[0.037-0.079] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
612	chr6_apd_hap1	3660071	3660072	rs2894254	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6p21.32	BTNL2	rs2894254-T	0.8879	6E-7	(EA)	0.0363	[0.022-0.051] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
612	chr6_apd_hap1	3660071	3660072	rs2894254	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.32	NOTCH4, C6orf10	rs2894254-?	0.8879	5E-7	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
612	chr6_apd_hap1	3660071	3660072	rs2894254	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.32	BTNL2	rs2894254-?	0.8879	9E-9	(men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
612	chr6_apd_hap1	3660071	3660072	rs2894254	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.32	BTNL2	rs2894254-?	0.8879	9E-9	(EA, men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
612	chr6_apd_hap1	3660873	3660874	rs9268435	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Serum alkaline phosphatase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	6p21.32	LOC101929163	rs9268435-?		1E-10		0.0358	[0.025-0.047] unit decrease	Illumina [31500000] (imputed)	N
612	chr6_apd_hap1	3663939	3663940	rs3117103	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	6p21.32		rs3117103-A	0.859948	4E-9		0.0339726	[0.023-0.045] unit decrease	NR [11722792] (imputed)	N
612	chr6_apd_hap1	3664836	3664837	rs28732201	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p21.32	NR	rs28732201-?	NR	6E-16		0.1787	[0.14-0.22] unit decrease	Illumina [at least 560000] (imputed)	N
612	chr6_apd_hap1	3665948	3665949	rs6930777	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6p21.32		rs6930777-?	NR	5E-17		1.14262	[1.11-1.17]	NR [685523]	N
612	chr6_apd_hap1	3666998	3666999	rs9268465	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HCG23	rs9268465-T	NR	6E-10		0.0196001	[0.013-0.026] unit decrease	Affymetrix [319769] (imputed)	N
612	chr6_apd_hap1	3666998	3666999	rs9268465	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HCG23	rs9268465-T	NR	2E-8		0.0196784	[0.013-0.027] unit decrease	Affymetrix [323858] (imputed)	N
612	chr6_apd_hap1	3666998	3666999	rs9268465	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HCG23	rs9268465-T	NR	1E-9		0.0191769	[0.013-0.025] unit decrease	Affymetrix [319769] (imputed)	N
612	chr6_apd_hap1	3668288	3668289	rs9279623	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	6p21.32	HCG23	rs9279623-G	0.5081	7E-9		5.794	NR z score increase	Illumina [26237160] (imputed)	N
612	chr6_apd_hap1	3668798	3668799	rs4424066	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	6p21.32	NR	rs4424066-A	0.578029598622173	7E-14		0.024764335	units decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
613	chr6_apd_hap1	3671608	3671609	rs146003878	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs146003878-A	0.016	5E-11	(conditional)	1.678	[1.52-1.83]	Illumina [11270530] (imputed)	N
613	chr6_apd_hap1	3672570	3672571	rs3129950	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.32	BTNL2	rs3129950-G	0.8899	4E-9	(men)	0.0593	[0.04-0.079] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
613	chr6_apd_hap1	3672639	3672640	rs3117099	22688191	Bergen SE	2012-06-12	Mol Psychiatry	Genome-wide association study in a Swedish population yields support for greater CNV and MHC involvement in schizophrenia compared with bipolar disorder.	Bipolar disorder and schizophrenia	2,111 European ancestry schizophrenia cases, 836 European ancestry bipolar disorder cases, 2,535 European ancestry controls	NA	6p21.32	other genes, MHC	rs3117099-?	NR	3E-6		1.25	[NR]	Affymetrix [745006]	N
613	chr6_apd_hap1	3672882	3672883	rs3117098	21804548	Hirota T	2011-07-31	Nat Genet	Genome-wide association study identifies three new susceptibility loci for adult asthma in the Japanese population.	Asthma	1,532 Japanese ancestry cases, 3,304 Japanese ancestry controls	5,639 Japanese ancestry cases, 24,608 Japanese ancestry controls	6p21.32	BTNL2	rs3117098-G	0.25	5E-12		1.16	[1.11-1.21]	Illumina [458847]	N
613	chr6_apd_hap1	3672918	3672919	rs9348883	29903748	Debiec H	2018-06-14	J Am Soc Nephrol	Transethnic, Genome-Wide Analysis Reveals Immune-Related Risk Alleles and Phenotypic Correlates in Pediatric Steroid-Sensitive Nephrotic Syndrome.	Childhood steroid-sensitive nephrotic syndrome	244 European ancestry cases, 2,552 European ancestry controls, 56 African cases, 454 African controls, 85 Maghrebian cases, 261 Maghrebian controls	NA	6p21.32	LOC101929163, HCG23, BTNL2	rs9348883-T	0.94	9E-7	(conditioned on rs1063348 & rs28366266)	3.5	[2.13-5.83]	Illumina [at least 7529344] (imputed)	N
613	chr6_apd_hap1	3673058	3673059	rs3117097	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling nervous	373,121 European ancestry individuals	NA	6p21.32	PSORS1C1	rs3117097-A	0.164022	4E-10		6.26	z score increase	NR [10847151] (imputed)	N
613	chr6_apd_hap1	3673829	3673830	rs16870123	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	6p21.32	NR	rs16870123-?	NR	1E-10		6.408	NR z score decrease	Illumina [at least 830937] (imputed)	N
613	chr6_apd_hap1	3675502	3675503	rs3817971	34871226	Kim SY	2021-11-01	Medicine (Baltimore)	Genome-wide association study identifies BTNL2 associated with atopic asthma in children.	Atopic asthma	243 East Asian ancestry child cases, 134 East Asian ancestry child controls	NA	6p21.32		rs3817971-A	NR	6E-7		3.509	[2.09-5.889]	Affymetrix [423461]	N
613	chr6_apd_hap1	3675502	3675503	rs3817971	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p21.32	C6orf10, BTNL2	rs3817971-C	0.03	5E-6	(Turkish)	2.62	[1.71-4.01]	Illumina [up to 547389]	N
613	chr6_apd_hap1	3675854	3675855	rs17202393	33592630	Herrera-Rivero M	2021-02-16	Thromb Haemost	Single- and Multimarker Genome-Wide Scans Evidence Novel Genetic Risk Modifiers for Venous Thromboembolism.	Venous thromboembolism	964 European ancestry cases, 899 European ancestry controls	NA	6p21.32	BTNL2, HCG23	rs17202393-A	NR	4E-38		0.03743	[0.02273-0.06163]	Illumina [484621]	N
613	chr6_apd_hap1	3676380	3676381	rs114516436	27629369	Gao J	2016-09-15	Neuropsychopharmacology	Genome-Wide Association Study of Loneliness Demonstrates a Role for Common Variation.	Loneliness (multivariate analysis)	8,490 European ancestry individuals, 1,228 African American individuals, 867 Hispanic American individuals, 175 individuals	NA	6p21.32	BTNL2, HCG23, C6orf10	rs114516436-?	NR	2E-6	(EA)			Illumina [7205781] (imputed)	N
613	chr6_apd_hap1	3677584	3677585	rs1980493	25936594	Tomer Y	2015-04-27	J Autoimmun	Genome wide identification of new genes and pathways in patients with both autoimmune thyroiditis and type 1 diabetes.	Type 1 diabetes and autoimmune thyroid diseases	346 European ancestry cases, 727 European ancestry controls	185 European ancestry cases, 340 European ancestry controls	6p21.32	BTNL2	rs1980493-G	NR	2E-20		2.5034		Illumina [514008]	N
613	chr6_apd_hap1	3677584	3677585	rs1980493	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.32	BTNL2	rs1980493-G	0.1656	1E-48		2.87	[NR]	Illumina [242824]	N
613	chr6_apd_hap1	3677584	3677585	rs1980493	19287509	Cui J	2009-03-14	Mol Med	Genome-wide association study of determinants of anti-cyclic citrullinated peptide antibody titer in adults with rheumatoid arthritis.	Anti-cyclic Citrullinated Peptide Antibody	531 European ancestry cases	849 European ancestry cases	6p21.32	HLA-DRA, BTNL2	rs1980493-?	0.13	5E-7				Affymetrix [97248]	N
613	chr6_apd_hap1	3678185	3678186	rs2076530	22936702	Hofmann S	2012-08-30	Eur Respir J	Genome-wide association analysis reveals 12q13.3-q14.1 as new risk locus for sarcoidosis.	Sarcoidosis	637 European ancestry cases, 1,233 European ancestry controls	3,121 European ancestry cases, 4,284 European ancestry controls	6p21.32	BTNL2	rs2076530-?	NR	3E-11	(Chronic)			Affymetrix [677619]	N
613	chr6_apd_hap1	3678213	3678214	rs9268480	19915573	Asano K	2009-11-15	Nat Genet	A genome-wide association study identifies three new susceptibility loci for ulcerative colitis in the Japanese population.	Ulcerative colitis	376 Japanese ancestry cases, 934 Japanese ancestry controls	376 Japanese ancestry cases, 1,097 Japanese ancestry controls	6p21.32	BTNL2	rs9268480-G	0.91	3E-6		1.82	[1.43-2.33]	Illumina [513923]	N
613	chr6_apd_hap1	3678324	3678325	rs2076529	32766473	Yoshida K	2020-05-19	Hepatol Commun	Genome-Wide Association Study of Lean Nonalcoholic Fatty Liver Disease Suggests Human Leukocyte Antigen as a Novel Candidate Locus.	Lean nonalcoholic fatty liver disease	275 Japanese ancestry cases, 1,411 Japanese ancestry controls	NA	6p21.32	NR	rs2076529-?	NR	2E-7		1.66	[1.37-2.00]	Affymetrix [NR]	N
613	chr6_apd_hap1	3678324	3678325	rs2076529	20935629	Heid IM	2010-10-10	Nat Genet	Meta-analysis identifies 13 new loci associated with waist-hip ratio and reveals sexual dimorphism in the genetic basis of fat distribution.	Waist-hip ratio	Up to 77,167 European ancestry individuals	Up to 113,636 European ancestry individuals	6p21.32	BTNL2	rs2076529-C	0.43	4E-7		0.02	[NR] unit increase	Affymetrix, Illumina, Perlegen [up to 2850269] (imputed)	N
613	chr6_apd_hap1	3680790	3680791	rs4248166	29534301	Nishida N	2018-03-13	Hepatology	Key HLA-DRB1-DQB1 haplotypes and role of the BTNL2 gene for response to a hepatitis B vaccine.	Response to hepatitis B vaccine	107 Japanese ancestry low responder individuals, 351 Japanese ancestry intermediate responder individuals, 735 Japanese ancestry high responder individuals	NA	6p21.32	BTNL2	rs4248166-?		1E-12		0.124	unit decrease	Affymetrix [427664]	N
613	chr6_apd_hap1	3680790	3680791	rs4248166	26819262	Zhou Y	2016-01-27	Mult Scler	Genetic loci for Epstein-Barr virus nuclear antigen-1 are associated with risk of multiple sclerosis.	Epstein Barr virus nuclear antigen 1 IgG levels	1,243 parents and up to 2,356 children from 992 families, 1,956 Mexican American individuals		6p21.32	NR	rs4248166-T		9E-11	(Mexican American)	0.16	unit decrease	Illumina [up to 2428201] (imputed)	N
613	chr6_apd_hap1	3680790	3680791	rs4248166	26819262	Zhou Y	2016-01-27	Mult Scler	Genetic loci for Epstein-Barr virus nuclear antigen-1 are associated with risk of multiple sclerosis.	Epstein Barr virus nuclear antigen 1 IgG levels	1,243 parents and up to 2,356 children from 992 families, 1,956 Mexican American individuals		6p21.32	NR	rs4248166-T		1E-9		0.16	unit decrease	Illumina [up to 2428201] (imputed)	N
613	chr6_apd_hap1	3681386	3681387	rs3117116	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein BGLAP	5,367 Icelandic ancestry individuals	NA	6p21.32		rs3117116-G	0.2246	5E-20		0.208543	[0.16-0.25] unit decrease	Illumina [7506463] (imputed)	N
613	chr6_apd_hap1	3682456	3682457	rs3817963	27501781	Shiraishi K	2016-08-09	Nat Commun	Association of variations in HLA class II and other loci with susceptibility to EGFR-mutated lung adenocarcinoma.	EGFR mutation-positive lung adenocarcinoma	663 Japanese ancestry cases, 4,367 Japanese ancestry controls	2,510 Japanese ancestry cases, 10,791 Japanese ancestry controls	6p21.32	BTNL2	rs3817963-G	0.316	1E-16		1.29	[1.21-1.37]	Illumina [NR] (imputed)	N
613	chr6_apd_hap1	3682456	3682457	rs3817963	23472185	Mero IL	2013-03-05	PLoS One	Oligoclonal band status in Scandinavian multiple sclerosis patients is associated with specific genetic risk alleles.	Multiple sclerosis (OCB status)	1,367 European ancestry OCB positive cases, 161 European ancestry OCB negative cases, 428 European ancestry controls	NA	6p21.32	BTNL2	rs3817963-?	NR	8E-6	(OCB positive vs. controls)	1.52	[1.27-1.79]	Illumina [495970]	N
613	chr6_apd_hap1	3682456	3682457	rs3817963	23472185	Mero IL	2013-03-05	PLoS One	Oligoclonal band status in Scandinavian multiple sclerosis patients is associated with specific genetic risk alleles.	Multiple sclerosis (OCB status)	1,367 European ancestry OCB positive cases, 161 European ancestry OCB negative cases	3,029 European ancestry OCB positive cases, 374 European ancestry OCB negative cases	6p21.32	BTNL2	rs3817963-?	NR	6E-10		1.61	[1.38-1.87]	Illumina [495970]	N
613	chr6_apd_hap1	3682456	3682457	rs3817963	23321320	Urabe Y	2013-01-12	J Hepatol	A genome-wide association study of HCV-induced liver cirrhosis in the Japanese population identifies novel susceptibility loci at the MHC region.	Hepatitis C induced liver cirrhosis	682 Japanese ancestry cases, 1,045 Japanese ancestry controls	936 Japanese ancestry cases, 3,809 Japanese ancestry controls	6p21.32	BTNL2	rs3817963-A	0.315	1E-8		1.3	[1.18-1.42]	Illumina [431618]	N
613	chr6_apd_hap1	3682456	3682457	rs3817963	22797724	Shiraishi K	2012-07-15	Nat Genet	A genome-wide association study identifies two new susceptibility loci for lung adenocarcinoma in the Japanese population.	Lung adenocarcinoma	1,695 Japanese ancestry cases, 5,333 Japanese ancestry controls	4,334 Japanese ancestry cases, 8,202 Japanese ancestry controls	6p21.32	BTNL2	rs3817963-G	0.318	3E-10		1.18	[1.12-1.24]	Illumina [538166]	N
613	chr6_apd_hap1	3682927	3682928	rs9268485	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	BTNL2	rs9268485-C	NR	1E-22		0.0275591	[0.022-0.033] unit decrease	Affymetrix [319769] (imputed)	N
613	chr6_apd_hap1	3682927	3682928	rs9268485	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	BTNL2	rs9268485-C	NR	2E-12		0.0220667	[0.016-0.028] unit decrease	Affymetrix [323858] (imputed)	N
613	chr6_apd_hap1	3682927	3682928	rs9268485	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	BTNL2	rs9268485-C	NR	4E-22		0.0271651	[0.022-0.033] unit decrease	Affymetrix [319769] (imputed)	N
613	chr6_apd_hap1	3682927	3682928	rs9268485	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	BTNL2	rs9268485-C	NR	3E-11		0.0208559	[0.015-0.027] unit decrease	Affymetrix [127266] (imputed)	N
613	chr6_apd_hap1	3682927	3682928	rs9268485	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	BTNL2	rs9268485-C	NR	3E-13		0.0204722	[0.015-0.026] unit increase	Affymetrix [321016] (imputed)	N
613	chr6_apd_hap1	3682927	3682928	rs9268485	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	BTNL2	rs9268485-C	NR	2E-12		0.0216048	[0.016-0.028] unit increase	Affymetrix [323123] (imputed)	N
613	chr6_apd_hap1	3682929	3682930	rs9268486	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs9268486-T	0.248	8E-27	(conditional)	1.384	[1.33-1.44]	Illumina [11270530] (imputed)	N
613	chr6_apd_hap1	3683855	3683856	rs3763305	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	6p21.32		rs3763305-G	0.949	4E-9				Affymetrix [10369434] (imputed)	N
613	chr6_apd_hap1	3683855	3683856	rs3763305	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.32	BTNL2	rs3763305-A	0.051434	4E-15		0.041934814	[0.031-0.052] unit decrease	Affymetrix [93095623] (imputed)	N
613	chr6_apd_hap1	3684954	3684955	rs9461741	25569183	Vijai J	2015-01-08	Nat Commun	A genome-wide association study of marginal zone lymphoma shows association to the HLA region.	Marginal zone lymphoma	825 European ancestry cases, 6,221 European ancestry controls	456 European ancestry cases, 906 European ancestry controls	6p21.32	BTNL2	rs9461741-C	0.018	4E-15		2.66	[2.08-3.39]	Illumina [611856]	N
613	chr6_apd_hap1	3684983	3684984	rs2076525	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	BTNL2	rs2076525-C	NR	9E-15		0.0237827	[0.018-0.03] unit increase	Affymetrix [321169] (imputed)	N
613	chr6_apd_hap1	3685202	3685203	rs2076523	29903748	Debiec H	2018-06-14	J Am Soc Nephrol	Transethnic, Genome-Wide Analysis Reveals Immune-Related Risk Alleles and Phenotypic Correlates in Pediatric Steroid-Sensitive Nephrotic Syndrome.	Childhood steroid-sensitive nephrotic syndrome	56 African cases, 454 African controls	NA	6p21.32	BTNL2	rs2076523-?	NR	2E-9		4.8	[2.9-7.9]	Illumina [at least 7529344] (imputed)	N
613	chr6_apd_hap1	3687552	3687553	rs10947260	28369058	Folkersen L	2017-04-03	PLoS Genet	Mapping of 79 loci for 83 plasma protein biomarkers in cardiovascular disease.	Blood protein levels in cardiovascular risk	3,394 European ancestry individuals	2,639 individuals	6p21.32	NOTCH4, AGER, ATF6B	rs10947260-C	0.1	6E-9		0.25	unit increase	Illumina [5270624] (imputed)	N
613	chr6_apd_hap1	3687599	3687600	rs10947261	23850713	Yang SK	2013-07-14	Gut	Genome-wide association study of Crohn's disease in Koreans revealed three new susceptibility loci and common attributes of genetic susceptibility across ethnic populations.	Crohn's disease	532 Korean ancestry cases, 733 Korean ancestry controls	1,779 Korean ancestry cases, 1,709 Korean ancestry controls	6p21.32	HLA-DRA, HLA-DRB5, BTNL2, HLA-DRB1, HLA-DQA1	rs10947261-T	0.294	3E-12		1.36	[1.25-1.49]	Illumina [5664371] (imputed)	N
613	chr6_apd_hap1	3687679	3687680	rs10947262	20305777	Nakajima M	2010-03-18	PLoS One	New sequence variants in HLA class II/III region associated with susceptibility to knee osteoarthritis identified by genome-wide association study.	Knee osteoarthritis	899 Japanese ancestry cases, 3,396 Japanese ancestry controls	167 Japanese ancestry cases, 347 Japanese ancestry controls, 813 European ancestry  cases, 1,071 European ancestry controls,	6p21.32	HLA-DQA2, HLA-DQB1, BTNL2	rs10947262-T	0.42	5E-9		1.31	[1.20-1.44]	Illumina [459393]	N
613	chr6_apd_hap1	3688065	3688066	rs3806156	20410501	Jin Y	2010-04-21	N Engl J Med	Variant of TYR and autoimmunity susceptibility loci in generalized vitiligo.	Vitiligo	1,392 European ancestry cases, 2,629 European ancestry controls	647 European ancestry cases, 1,056 European ancestry controls, 183 European ancestry trios, 1,383 European ancestry individuals from 332 families	6p21.32	HLA-DRA, BTNL2, HLA-DQA1	rs3806156-T	0.37	7E-19		1.42	[1.32-1.54]	Illumina [520460]	N
613	chr6_apd_hap1	3688168	3688169	rs3806157	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	BTNL2	rs3806157-G	NR	4E-8		0.0162252	[0.01-0.022] unit increase	Affymetrix [321114] (imputed)	N
613	chr6_apd_hap1	3688962	3688963	rs2395158	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	6p21.32	BTNL2	rs2395158-A	0.830652	5E-40		0.0345684	[0.029-0.04] unit increase	Affymetrix [NR] (imputed)	N
613	chr6_apd_hap1	3690340	3690341	rs3763309	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls	NA	6p21.32	HLA-DRA, BTNL2	rs3763309-A	0.21	1E-18		0.13	[0.091-0.169] unit increase	Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
613	chr6_apd_hap1	3690340	3690341	rs3763309	24449572	Orozco G	2014-01-01	Arthritis Rheumatol	Novel rheumatoid arthritis susceptibility locus at 22q12 identified in an extended UK genome-wide association study.	Rheumatoid arthritis	3,034 European ancestry cases, 5,271 European ancestry controls	4,726 European ancestry cases, 2,625 European ancestry controls	6p21.32	HLA-DRB1	rs3763309-?		2E-124		2.3	[2.14-2.46]	Affymetrix, Illumina [1831729] (imputed)	N
613	chr6_apd_hap1	3690543	3690544	rs3763311	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Cancer	56,634 White British ancestry cases, 218,196 White British ancestry controls	NA	6p21.32		rs3763311-?	NR	1E-5		0.967842	[0.95-0.98]	NR [688737]	N
613	chr6_apd_hap1	3690715	3690716	rs3763312	26039976	Wei Z	2015-06-17	Sci Rep	Genome-Wide Association Studies of HIV-1 Host Control in Ethnically Diverse Chinese Populations.	HIV-1 viral setpoint	326 Han Chinese ancestry cases, 58 Dai Chinese ancestry cases, 40 Jingpo Chinese ancestry cases, 83 Uygur Chinese ancestry cases, 11 Hui Chinese ancestry cases, 20 East Asian cases	NA	6p21.32	BTNL2, HLA-DRA	rs3763312-A	0.15	6E-6	(Han)	0.4002	unit decrease	Illumina [up to 528294]	N
613	chr6_apd_hap1	3690727	3690728	rs17208853	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Skin reflectance (Melanin index)	720 South Asian ancestry individuals		6p21.32	NR	rs17208853-C	NR	8E-6		0.649209	[0.36-0.93] unit decrease	Affymetrix, Illumina [at least 398118] (imputed)	N
613	chr6_apd_hap1	3690838	3690839	rs3763313	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.32		rs3763313-C	0.17885300000000004	1E-26		1.0591807	[1.05-1.08]	Affymetrix, Illumina [9851866] (imputed)	N
613	chr6_apd_hap1	3690838	3690839	rs3763313	20041166	Fellay J	2009-12-24	PLoS Genet	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	6p21.32	NOTCH4, BTNL2	rs3763313-?	NR	2E-6	(progression)			Illumina [NR]	N
613	chr6_apd_hap1	3690884	3690885	rs9268500	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (drugs affecting bone structure and mineralization)	7,870 European ancestry cases, 207,798 European ancestry controls	NA	6p21.32	BTNL2	rs9268500-T	0.0508279	2E-8		0.20306516	[0.13-0.27] unit increase	Affymetrix [7288503] (imputed)	N
613	chr6_apd_hap1	3691155	3691156	rs3763317	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	BTNL2	rs3763317-T	NR	1E-12		0.0200715	[0.015-0.026] unit increase	Affymetrix [319769] (imputed)	N
613	chr6_apd_hap1	3691155	3691156	rs3763317	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	BTNL2	rs3763317-T	NR	1E-10		0.0202983	[0.014-0.026] unit increase	Affymetrix [323858] (imputed)	N
613	chr6_apd_hap1	3691155	3691156	rs3763317	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	BTNL2	rs3763317-T	NR	6E-12		0.0194272	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
613	chr6_apd_hap1	3691155	3691156	rs3763317	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	BTNL2	rs3763317-T	NR	2E-9		0.0188282	[0.013-0.025] unit increase	Affymetrix [127266] (imputed)	N
613	chr6_apd_hap1	3691155	3691156	rs3763317	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	BTNL2	rs3763317-T	NR	2E-14		0.0235125	[0.017-0.03] unit decrease	Affymetrix [323123] (imputed)	N
613	chr6_apd_hap1	3691155	3691156	rs3763317	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	BTNL2	rs3763317-T	NR	2E-13		0.0209669	[0.015-0.027] unit increase	Affymetrix [321169] (imputed)	N
613	chr6_apd_hap1	3691155	3691156	rs3763317	23028341	Yang X	2012-09-13	PLoS Genet	Genome-wide association study for serum complement C3 and C4 levels in healthy Chinese subjects.	Complement C3 and C4 levels	1,999 Han Chinese ancestry male individuals	1,496 Han Chinese ancestry male individuals	6p21.32	HLA-DRB	rs3763317-C	0.37	9E-66	(Serum level of C4)	0.12	[0.10-0.14] g/L increase	Illumina [1940245] (imputed)	N
613	chr6_apd_hap1	3691420	3691421	rs116835963	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs116835963-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
613	chr6_apd_hap1	3691775	3691776	rs9268505	33713768	Akenroye AT	2021-03-10	J Allergy Clin Immunol	Genome-wide Association study of Asthma, Total IgE, and Lung function in a Cohort of Peruvian Children.	Serum IgE levels	727 Peruvian individuals	NA	6p21.32		rs9268505-?	NR	6E-8		0.211	unit increase	Illumina [NR] (imputed)	N
613	chr6_apd_hap1	3693682	3693682	rs574027387	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs574027387-A	0.673	3E-23	(conditional)	1.376	[1.31-1.44]	Illumina [11270530] (imputed)	N
613	chr6_apd_hap1	3693751	3693752	rs3129962	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	6p21.32	BTNL2	rs3129962-G	0.870649	8E-18		0.0243898	[0.019-0.03] unit increase	Affymetrix [NR] (imputed)	N
613	chr6_apd_hap1	3693857	3693858	rs9268516	33328473	Ahluwalia TS	2020-12-16	Nat Commun	FUT2-ABO epistasis increases the risk of early childhood asthma and Streptococcus pneumoniae respiratory illnesses.	Childhood asthma with severe exacerbations	2,866 European ancestry cases,  65,415 European ancestry controls	NA	6p21.32	NR	rs9268516-A	NR	5E-10		0.1936	[0.13-0.25] unit increase	Illumina [up to 525976] (imputed)	N
613	chr6_apd_hap1	3693857	3693858	rs9268516	23028483	Ramasamy A	2012-09-28	PLoS One	Genome-wide association studies of asthma in population-based cohorts confirm known and suggested loci and identify an additional association near HLA.	Asthma	1,716 European ancestry cases, 16,888 European ancestry controls	4,035 European ancestry cases, 11,251 European ancestry controls	6p21.32	HLA-DRA, BTNL2	rs9268516-T	0.24	1E-8		1.15	[1.10-1.21]	Affymetrix, Illumina [~ 2200000] (imputed)	N
613	chr6_apd_hap1	3694104	3694105	rs9405098	23321320	Urabe Y	2013-01-12	J Hepatol	A genome-wide association study of HCV-induced liver cirrhosis in the Japanese population identifies novel susceptibility loci at the MHC region.	Hepatitis C induced liver cirrhosis	682 Japanese ancestry cases, 1,045 Japanese ancestry controls	936 Japanese ancestry cases, 3,809 Japanese ancestry controls	6p21.32	intergenic	rs9405098-A	0.253	1E-10		1.37	[1.24-1.51]	Illumina [431618]	N
613	chr6_apd_hap1	3695277	3695278	rs9380294	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p21.32	BTNL2, HLA-DRA	rs9380294-C	0.01	7E-6	(EA)	4.76	[2.25-10.07]	Illumina [up to 547389]	N
613	chr6_apd_hap1	3696104	3696105	rs7759742	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI in non-smokers	75,379 European ancestry women, 45,811 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	6p21.32	BTNL2	rs7759742-A	0.5117	1E-7		0.0144	[0.0091-0.0197] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
613	chr6_apd_hap1	3696104	3696105	rs7759742	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (joint analysis main effects and smoking interaction)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	6p21.32	BTNL2	rs7759742-A	0.5117	1E-8				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
613	chr6_apd_hap1	3696104	3696105	rs7759742	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	6p21.32	BTNL2	rs7759742-A	0.5117	3E-6	(men)	0.0248	[0.014-0.035] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
613	chr6_apd_hap1	3696104	3696105	rs7759742	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	6p21.32	BTNL2	rs7759742-A	0.5117	1E-9		0.0217	[0.015-0.029] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
613	chr6_apd_hap1	3696104	3696105	rs7759742	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex x age interaction (4df test)	up to 43,776 European ancestry men aged <50, up to 50,526 European ancestry women aged <50, up to 69,944 European ancestry men aged >50, up to 88,129 European ancestry women aged >50	NA	6p21.32	NR	rs7759742-A	0.509001212874385	2E-12				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
613	chr6_apd_hap1	3696104	3696105	rs7759742	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p21.32	BTNL2	rs7759742-A	0.517	2E-11		0.0224	[0.016-0.029] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
613	chr6_apd_hap1	3696104	3696105	rs7759742	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p21.32	BTNL2	rs7759742-A	0.5158	5E-8	(women)	0.0241	[0.015-0.033] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
613	chr6_apd_hap1	3696104	3696105	rs7759742	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p21.32	BTNL2	rs7759742-A	0.5154	4E-6	(men)	0.0223	[0.013-0.032] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
613	chr6_apd_hap1	3696104	3696105	rs7759742	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p21.32	BTNL2	rs7759742-A	0.511	4E-11	(EA)	0.0226	[0.016-0.029] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
613	chr6_apd_hap1	3696104	3696105	rs7759742	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p21.32	BTNL2	rs7759742-A	0.5107	2E-7	(EA, women)	0.0237	[0.015-0.033] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
613	chr6_apd_hap1	3696104	3696105	rs7759742	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p21.32	BTNL2	rs7759742-A	0.5106	5E-6	(EA, men)	0.0226	[0.013-0.032] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
613	chr6_apd_hap1	3736559	3736560	rs2097442	34642315	Ferreiro-Iglesias A	2021-10-12	Nat Commun	Germline determinants of humoral immune response to HPV-16 protect against oropharyngeal cancer.	Oropharynx cancer and human papilloma virus 16 negative oropharyngeal cancer	2,359 European ancestry cases, 565 European ancestry controls	NA	6p21.32		rs2097442-A	NR	1E-6		1.2355		Illumina [up to 7574753] (imputed)	N
613	chr6_apd_hap1	3736559	3736560	rs2097442	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Non-Hodgkin's lymphoma	2,400 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs2097442-A	NR	3E-19		1.3187393	NR	Affymetrix [7846216] (imputed)	N
613	chr6_apd_hap1	3737886	3737887	rs140302846	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	6p21.32	NR	rs140302846-?	NR	1E-15				Affymetrix [~ 8270000] (imputed)	N
613	chr6_apd_hap1	3737886	3737887	rs140302846	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs140302846-?	NR	7E-13				Affymetrix [~ 8270000] (imputed)	N
613	chr6_apd_hap1	3738292	3738293	rs9268807	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	HLA	rs9268807-C	0.208	5E-117		1.604	[1.56-1.65]	Illumina [11270530] (imputed)	N
613	chr6_apd_hap1	3738408	3738409	rs13220657	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs13220657-T	0.21	2E-8		4.13	[3.16-5.38]	Illumina [NR] (imputed)	N
613	chr6_apd_hap1	3738747	3738748	rs9268811	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DRB9	rs9268811-T	NR	1E-14		0.0222291	[0.017-0.028] unit increase	Affymetrix [321169] (imputed)	N
613	chr6_apd_hap1	3738971	3738972	rs9268813	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	6p21.32	NR	rs9268813-?	NR	8E-14				Affymetrix [~ 8270000] (imputed)	N
613	chr6_apd_hap1	3738971	3738972	rs9268813	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.32	NR	rs9268813-?	NR	8E-15				Affymetrix [~ 8270000] (imputed)	N
613	chr6_apd_hap1	3738971	3738972	rs9268813	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs9268813-?	NR	1E-17				Affymetrix [~ 8270000] (imputed)	N
613	chr6_apd_hap1	3739259	3739260	rs7763262	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	6p21.32	HLA-DQB1, HLA-DQA1, HLA-DRB1	rs7763262-C	0.72	1E-10	(East Asian)	1.3	[NR]	Illumina [> 1000000] (imputed)	N
613	chr6_apd_hap1	3739259	3739260	rs7763262	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	6p21.32	HLA-DQB1, HLA-DQA1, HLA-DRB1	rs7763262-C	0.69	2E-38		1.41	[NR]	Illumina [> 1000000] (imputed)	N
613	chr6_apd_hap1	3739259	3739260	rs7763262	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	6p21.32	HLA-DQB1, HLA-DQA1, HLA-DRB1	rs7763262-C	0.69	1E-30	(EA)	1.49	[NR]	Illumina [> 1000000] (imputed)	N
613	chr6_apd_hap1	3739682	3739683	rs28895205	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs28895205-G	0.21	2E-8		4.13	[3.16-5.38]	Illumina [NR] (imputed)	N
613	chr6_apd_hap1	3739865	3739866	rs7744304	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DRB9	rs7744304-G	NR	9E-27		0.0345924	[0.028-0.041] unit increase	Affymetrix [323123] (imputed)	N
613	chr6_apd_hap1	3740140	3740141	rs41291794	27927641	Ombrello MJ	2016-12-07	Ann Rheum Dis	Genetic architecture distinguishes systemic juvenile idiopathic arthritis from other forms of juvenile idiopathic arthritis: clinical and therapeutic implications.	Systemic juvenile idiopathic arthritis	178 European ancestry cases, 434 European ancestry controls, 81 Hispanic/Latin American cases, 177 Hispanic/Latin American controls, 511 cases, 6,336 controls	NA	6p21.32	HLA-DRA	rs41291794-?		4E-15	(Additive)	2.1	[1.80-2.60]	Illumina [5600610] (imputed)	N
613	chr6_apd_hap1	3740361	3740362	rs6457592	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DRB9	rs6457592-C	NR	2E-10		0.0179035	[0.012-0.023] unit decrease	Affymetrix [321016] (imputed)	N
613	chr6_apd_hap1	3741383	3741384	rs113164910	27668658	Iotchkova V	2016-11-01	Nat Genet	Discovery and refinement of genetic loci associated with cardiometabolic risk using dense imputation maps.	Cardiometabolic and hematological traits	up to 35,981 European ancestry individuals	up to 102,505 European ancestry individuals	6p21.32	HLA-DRA	rs113164910-AAC		4E-54	(WBC)	0.008	[0.008-0.008] unit increase	Affymetrix, Illumina [17000000] (imputed)	N
613	chr6_apd_hap1	3741479	3741480	rs1547422	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD45 on CD4+ T cell	3,113 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs1547422-G	0.77074	1E-9		0.204	[0.14-0.27] unit decrease	Illumina [18030777] (imputed)	N
613	chr6_apd_hap1	3741559	3741560	rs1548306	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycoprotein acetyls levels	115,082 European ancestry individuals	NA	6p21.32		rs1548306-A	0.337505	3E-30		0.0494261	[0.041-0.058] unit decrease	NR [11722792] (imputed)	N
613	chr6_apd_hap1	3741559	3741560	rs1548306	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA	6p21.32	NR	rs1548306-?	NR	9E-7		0.0374	[0.023-0.052] unit increase	Illumina [at least 560000] (imputed)	N
613	chr6_apd_hap1	3741559	3741560	rs1548306	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	6p21.32	Intergenic	rs1548306-T	NR	6E-10		0.0234279	[0.016-0.031] unit decrease	Illumina [13519193] (imputed)	N
613	chr6_apd_hap1	3741559	3741560	rs1548306	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.32	Intergenic	rs1548306-T	NR	1E-11	(women)	0.0332253	[0.024-0.043] unit decrease	Illumina [13520550] (imputed)	N
613	chr6_apd_hap1	3741559	3741560	rs1548306	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.32	HLA-DRA, HLA-DRB5	rs1548306-T	0.634	9E-14		0.0256004	[0.019-0.032] unit decrease	Illumina [13520550] (imputed)	N
613	chr6_apd_hap1	3741559	3741560	rs1548306	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	6p21.32	HLA-DRA, HLA-DRB5	rs1548306-T	0.634	5E-29		0.0446701	[0.037-0.052] unit decrease	Illumina [13520550] (imputed)	N
613	chr6_apd_hap1	3741761	3741762	rs28732229	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs28732229-T	0.21	2E-8		4.13	[3.16-5.38]	Illumina [NR] (imputed)	N
613	chr6_apd_hap1	3742128	3742129	rs9268831	33558538	Gebresilase T	2021-02-08	Sci Rep	Replication of HLA class II locus association with susceptibility to podoconiosis in three Ethiopian ethnic groups.	Podoconiosis	1,137 Ethiopian ancestry cases, 1,152 Ethiopian ancestry controls	NA	6p21.32	HLA-DRB9	rs9268831-T	0.46	2E-9				Illumina [2201695]	N
613	chr6_apd_hap1	3742128	3742129	rs9268831	29534301	Nishida N	2018-03-13	Hepatology	Key HLA-DRB1-DQB1 haplotypes and role of the BTNL2 gene for response to a hepatitis B vaccine.	Response to hepatitis B vaccine	107 Japanese ancestry low responder individuals, 351 Japanese ancestry intermediate responder individuals, 735 Japanese ancestry high responder individuals	NA	6p21.32	HLA-DRAB5	rs9268831-?		1E-13		0.192	unit decrease	Affymetrix [427664]	N
613	chr6_apd_hap1	3742169	3742170	rs9268832	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs9268832-T	0.49	7E-10		0.14	[0.10-0.20]	Illumina [NR] (imputed)	N
613	chr6_apd_hap1	3742495	3742496	rs9268835	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DRB9	rs9268835-A	NR	4E-20		0.0276383	[0.022-0.034] unit increase	Affymetrix [319769] (imputed)	N
613	chr6_apd_hap1	3742495	3742496	rs9268835	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DRB9	rs9268835-A	NR	4E-20		0.0276817	[0.022-0.034] unit increase	Affymetrix [319769] (imputed)	N
613	chr6_apd_hap1	3742495	3742496	rs9268835	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	HLA-DRB9	rs9268835-A	NR	7E-13		0.0218474	[0.016-0.028] unit increase	Affymetrix [321114] (imputed)	N
613	chr6_apd_hap1	3742665	3742666	rs6903608	24920014	Cozen W	2014-06-12	Nat Commun	A meta-analysis of Hodgkin lymphoma reveals 19p13.3 TCF3 as a novel susceptibility locus.	Hodgkin's lymphoma	1,816 European ancestry cases, 7,877 European ancestry controls	1,281 European ancestry cases, 3,218 European ancestry controls	6p21.32	HLA class II, HLA class I	rs6903608-C	0.30	7E-31		1.64	[1.51-1.78]	Affymetrix, Illumina [1004829] (imputed)	N
613	chr6_apd_hap1	3742665	3742666	rs6903608	24149102	Frampton M	2013-10-22	Nat Commun	Variation at 3p24.1 and 6q23.3 influences the risk of Hodgkin's lymphoma.	Hodgkin's lymphoma	1,465 European ancestry cases, 6,417 European ancestry controls	1,071 European ancestry cases, 953 cases, 1,853 controls	6p21.32	NR	rs6903608-G	0.27	5E-27		1.62	[NR]	Illumina [296129]	N
613	chr6_apd_hap1	3742665	3742666	rs6903608	21037568	Enciso-Mora V	2010-10-31	Nat Genet	A genome-wide association study of Hodgkin's lymphoma identifies new susceptibility loci at 2p16.1 (REL), 8q24.21 and 10p14 (GATA3).	Hodgkin's lymphoma	589 European ancestry cases, 5,199 European ancestry controls	2,057 European ancestry cases, 3,416 European ancestry controls	6p21.32	HLA-DRA	rs6903608-G	0.27	3E-50		1.7	[1.58-1.82]	Illumina [504374]	N
613	chr6_apd_hap1	3743152	3743153	rs9268839	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	6p21.32	HLA-DRB1	rs9268839-A	NR	1E-100		0.737171	[0.52-0.95] unit decrease	Illumina [8380626] (imputed)	N
613	chr6_apd_hap1	3743152	3743153	rs9268839	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	6p21.32	HLA-DRB1	rs9268839-A	0.750718391	3E-7	(AA)	0.623752	[0.39-0.86] unit decrease	Illumina [8380626] (imputed)	N
613	chr6_apd_hap1	3743152	3743153	rs9268839	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	6p21.32	HLA-DRB1	rs9268839-A	0.56	4E-134	(East Asian)	0.64731	[0.6-0.7] unit decrease	Illumina [8380626] (imputed)	N
613	chr6_apd_hap1	3743152	3743153	rs9268839	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	6p21.32	HLA-DRB1	rs9268839-A	0.55	1E-250	(EA)	0.90412	[0.87-0.94] unit decrease	Illumina [8380626] (imputed)	N
613	chr6_apd_hap1	3743152	3743153	rs9268839	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	6p21.32	HLA-DRB1	rs9268839-G	0.45	1E-250	(EA)	2.47	[2.39-2.55]	Affymetrix, Illumina [up to 9739303] (imputed)	N
613	chr6_apd_hap1	3743152	3743153	rs9268839	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	6p21.32	HLA-DRB1	rs9268839-G	0.45	1E-250		2.28	[2.22-2.34]	Affymetrix, Illumina [up to 9739303] (imputed)	N
613	chr6_apd_hap1	3743152	3743153	rs9268839	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	6p21.32	HLA-DRB1	rs9268839-G	0.44	2E-145	(East Asian)	1.9	[1.81-1.99]	Affymetrix, Illumina [up to 9739303] (imputed)	N
613	chr6_apd_hap1	3743584	3743585	rs9268845	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	HLA-DRB9	rs9268845-T	NR	1E-11		0.0248689	[0.018-0.032] unit decrease	Affymetrix [127266] (imputed)	N
613	chr6_apd_hap1	3743625	3743626	rs9268846	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DRB9	rs9268846-G	NR	5E-10		0.0201434	[0.014-0.026] unit increase	Affymetrix [323858] (imputed)	N
613	chr6_apd_hap1	3743625	3743626	rs9268846	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	HLA-DRB9	rs9268846-G	NR	2E-9		0.019558	[0.013-0.026] unit increase	Affymetrix [127266] (imputed)	N
613	chr6_apd_hap1	3743683	3743684	rs9268848	32890573	Yan Q	2020-09-02	J Allergy Clin Immunol	A genome-wide association study of asthma hospitalizations in adults.	Exacerbations requiring hospitalisation in asthma	1,658 British ancestry cases, 32,509 British ancestry controls	NA	6p21.32	NR	rs9268848-G	0.42	2E-6		0.84	[NR]	Affymetrix [87696888] (imputed)	N
613	chr6_apd_hap1	3743683	3743684	rs9268848	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	6p21.32	HLA-DRB9	rs9268848-A	0.551419	2E-25		0.025138251	[0.02-0.03] unit increase	Affymetrix [93095623] (imputed)	N
613	chr6_apd_hap1	3743683	3743684	rs9268848	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	6p21.32	NR	rs9268848-?	NR	3E-20				Affymetrix [~ 8270000] (imputed)	N
613	chr6_apd_hap1	3743683	3743684	rs9268848	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	6p21.32	HLA-DRA	rs9268848-A	0.6148	6E-9	(East Asian)	0.0347	[0.023-0.046] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
613	chr6_apd_hap1	3743962	3743963	rs9268851	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein H6PD	5,364 Icelandic ancestry individuals	NA	6p21.32		rs9268851-A	0.2209	1E-96		0.45447	[0.41-0.5] unit increase	Illumina [7506463] (imputed)	N
613	chr6_apd_hap1	3744023	3744024	rs9268853	30552108	Kawabata Y	2018-12-14	Diabetes	A genome-Wide Association Study Confirming a Strong Effect of HLA and Identifying Variants in CSAD/lnc-ITGB7-1 on Chromosome 12q13.13 Associated with Susceptibility to Fulminant Type 1 Diabetes.	Fulminant type 1 diabetes	257 Japanese ancestry cases, 419 Japanese ancestry controls	NA	6p21.32	HLA	rs9268853-?	NR	2E-23		3.18	[2.53-4.01]	Affymetrix [426851] (imputed)	N
613	chr6_apd_hap1	3744023	3744024	rs9268853	23511034	Yang SK	2013-04-01	Inflamm Bowel Dis	Genome-wide association study of ulcerative colitis in Koreans suggests extensive overlapping of genetic susceptibility with Caucasians.	Ulcerative colitis	388 Korean ancestry cases, 739 Korean ancestry controls	417 Korean ancestry cases, 732 Korean ancestry controls	6p21.32	MHC	rs9268853-T	0.64	3E-6		1.37	[1.20-1.56]	Illumina [581060]	N
613	chr6_apd_hap1	3744023	3744024	rs9268853	23349640	Vijai J	2013-01-17	PLoS Genet	Susceptibility loci associated with specific and shared subtypes of lymphoid malignancies.	Lymphoma	275 Follicular non-Hodgkin's Lymphoma cases, 269 diffuse large B-cell non-Hodgkin's Lymphoma cases, 198 other non-Hodgkin's Lymphoma cases, 202 Hodgkin's Lymphoma cases, 4,044 controls	202 European ancestry Follicular non-Hodgkin's Lymphoma cases, 367 European ancestry diffuse large B-cell non-Hodgkin's Lymphoma cases, 577 European ancestry other non-Hodgkin's Lymphoma cases, 99 European ancestry Hodgkin's Lymphoma cases, 2,596 European ancestry controls	6p21.32	BTLN2, HLA-DRA, HLA-DRB5, HLA-DRB1	rs9268853-C	NR	2E-10	(FL)	1.56	[NR]	Affymetrix [530583]	N
613	chr6_apd_hap1	3744023	3744024	rs9268853	21297633	Anderson CA	2011-02-06	Nat Genet	Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47.	Ulcerative colitis	6,687 European ancestry cases, 19,718 European ancestry controls	9,628 European ancestry cases, 12,917 European ancestry controls	6p21.32	HLA-DRA, HLA-DRB5, BTNL2, HLA-DRB1, HLA-DQA1	rs9268853-T	0.66	1E-55		1.4	[1.34-1.47]	Affymetrix, Illumina [~ 1100000] (imputed)	N
613	chr6_apd_hap1	3744099	3744100	rs9268856	24943344	Ferrari R	2014-07-01	Lancet Neurol	Frontotemporal dementia and its subtypes: a genome-wide association study.	Frontotemporal dementia	1,377 European ancestry behavioural variant cases, 308 European ancestry Semantic dementia cases, 269 European ancestry Progressive nonfluent aphasia cases, 200 European ancestry Frontotremporal dementia with motor neuron disease cases, up to 4,308 European ancestry controls	690 European ancestry behavioural variant cases, 190 European ancestry Semantic dementia cases, 221 European ancestry Progressive nonfluent aphasia cases, 94 European ancestry Frontotremporal dementia with motor neuron disease cases, 177 European ancestry Frontotemporal lobar degeneration cases, up to 5,094 European ancestry controls	6p21.32	HLA-DRA, HLA-DRB5, BTNL2	rs9268856-C	0.748	6E-9	(All Frontotemporal dementia)	1.24	[1.16-1.32]	Illumina [6026385] (imputed)	N
613	chr6_apd_hap1	3745527	3745528	rs9268877	29905830	Lee HS	2018-08-01	J Crohns Colitis	An Intergenic Variant rs9268877 Between HLA-DRA and HLA-DRB Contributes to the Clinical Course and Long-term Outcome of Ulcerative Colitis.	Poor prognosis in Crohn's disease	243 Korean ancestry poor prognosis cases, 364 Korean ancestry good prognosis controls	145 Korean ancestry poor prognosis cases, 129 Korean ancestry good prognosis controls	6p21.32	NA	rs9268877-A	0.35	1E-8		1.72	[1.43-2.07]	Illumina [up to 519662]	N
613	chr6_apd_hap1	3745527	3745528	rs9268877	19915572	Barrett JC	2009-11-15	Nat Genet	Genome-wide association study of ulcerative colitis identifies three new susceptibility loci, including the HNF4A region.	Ulcerative colitis	2,361 European ancestry cases, 5,417 European ancestry controls	2,321 European ancestry cases, 4,818 European ancestry controls	6p21.32	MHC	rs9268877-?	NR	4E-23				Affymetrix [NR]	N
613	chr6_apd_hap1	3745527	3745528	rs9268877	18836448	Franke A	2008-10-05	Nat Genet	Sequence variants in IL10, ARPC2 and multiple other loci contribute to ulcerative colitis susceptibility.	Ulcerative colitis	1,167 European ancestry cases, 777 European ancestry controls	1,855 European ancestry cases, 3,091 European ancestry controls	6p21.32	HLA-DRA, BTNL2	rs9268877-T	0.45	6E-18		1.45	[1.33-1.58]	Affymetrix [355262]	N
613	chr6_apd_hap1	3746348	3746349	rs9268896	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs9268896-A	0.232	3E-20	(Complement C4, C4A.C4B.4481.34.2)	0.28	[0.22-0.34] unit decrease	Affymetrix [10572788] (imputed)	N
613	chr6_apd_hap1	3746460	3746461	rs9268905	28041642	Carmona FD	2016-12-29	Am J Hum Genet	A Genome-wide Association Study Identifies Risk Alleles in Plasminogen and P4HA2 Associated with Giant Cell Arteritis.	Giant cell arteritis	2,134 European ancestry cases, 9,125 European ancestry controls	NA	6p21.32	HLA-DRA, HLA-DRB1	rs9268905-?	0.37	2E-54		1.79	[1.67-1.93]	Illumina [1844133] (imputed)	N
613	chr6_apd_hap1	3746460	3746461	rs9268905	21602797	Wright FA	2011-05-22	Nat Genet	Genome-wide association and linkage identify modifier loci of lung disease severity in cystic fibrosis at 11p13 and 20q13.2.	Cystic fibrosis severity	2,317 European ancestry cases, 177 cases	898 European ancestry sibling pair cases, 75 sibling pair cases	6p21.32	HLA-DRA	rs9268905-C	0.32	1E-7				Illumina [~ 2609000] (imputed)	N
613	chr6_apd_hap1	3746883	3746884	rs78218185	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Asthma	13,015 East Asian ancestry cases, 162,933 East Asian ancestry controls	NA	6p21.32		rs78218185-A	0.135952394	4E-43		0.27918372	[0.24-0.32] unit increase	Illumina [13429513] (imputed)	N
613	chr6_apd_hap1	3747218	3747219	rs9268923	26819262	Zhou Y	2016-01-27	Mult Scler	Genetic loci for Epstein-Barr virus nuclear antigen-1 are associated with risk of multiple sclerosis.	Epstein Barr virus nuclear antigen 1 IgG levels	1,243 parents and up to 2,356 children from 992 families, 1,956 Mexican American individuals		6p21.32	HLA-DRB5, HLA-DQA1, HLA-DRA, HLA-DRB1	rs9268923-C	0.552	1E-11	(non-Mexican American parents and children)	0.18	unit increase	Illumina [up to 2428201] (imputed)	N
613	chr6_apd_hap1	3747218	3747219	rs9268923	26819262	Zhou Y	2016-01-27	Mult Scler	Genetic loci for Epstein-Barr virus nuclear antigen-1 are associated with risk of multiple sclerosis.	Epstein Barr virus nuclear antigen 1 IgG levels	1,243 parents and up to 2,356 children from 992 families, 1,956 Mexican American individuals		6p21.32	HLA-DRA, HLA-DRB5, HLA-DQA1, HLA-DRB1	rs9268923-C	0.552	1E-13	(non-Mexican American parents)	0.252	unit increase	Illumina [up to 2428201] (imputed)	N
613	chr6_apd_hap1	3747218	3747219	rs9268923	26819262	Zhou Y	2016-01-27	Mult Scler	Genetic loci for Epstein-Barr virus nuclear antigen-1 are associated with risk of multiple sclerosis.	Epstein Barr virus nuclear antigen 1 IgG levels	1,243 parents and up to 2,356 children from 992 families, 1,956 Mexican American individuals		6p21.32	HLA-DRA, HLA-DRB5, HLA-DQA1, HLA-DRB1	rs9268923-C	0.552	1E-11	(non-Mexican American sero-positive children)	0.225	unit increase	Illumina [up to 2428201] (imputed)	N
613	chr6_apd_hap1	3747218	3747219	rs9268923	20228798	Franke A	2010-03-14	Nat Genet	Genome-wide association study for ulcerative colitis identifies risk loci at 7q22 and 22q13 (IL17REL).	Ulcerative colitis	1,043 European ancestry cases, 1,703 European ancestry controls	2,539 European ancestry cases, 5,428 European ancestry controls	6p21.32	HLA-DRA	rs9268923-C	0.67	4E-15		1.45	[1.33-1.59]	Affymetrix [1897764] (imputed)	N
613	chr6_apd_hap1	3747352	3747353	rs9268925	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	6p21.32	Intergenic	rs9268925-C	NR	1E-23		0.0788801	[0.063-0.094] unit increase	Illumina [13520550] (imputed)	N
613	chr6_apd_hap1	3747440	3747441	rs9469120	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Yeast infection	52,218 European ancestry cases, 10,235 European ancestry controls	NA	6p21.32	NR	rs9469120-?	NR	9E-8		0.0846	[0.054-0.116] unit decrease	Illumina [at least 560000] (imputed)	N
613	chr6_apd_hap1	3747508	3747509	rs113585425	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs113585425-C	0.19	4E-8		4.04	[3.10-5.28]	Illumina [NR] (imputed)	N
613	chr6_apd_hap1	3747550	3747551	rs2395185	25186300	Terao C	2014-09-03	Arthritis Rheumatol	Association between antinuclear antibodies and the HLA class II locus and heterogeneous characteristics of staining patterns: the Nagahama study.	Antinuclear antibody levels	3,185 Japanese ancestry individuals	3,963 Japanese ancestry individuals	6p21.32	HLA-DRA, HLA-DRB5	rs2395185-?	NR	1E-11		0.25	unit increase	Illumina [303506]	N
613	chr6_apd_hap1	3747550	3747551	rs2395185	23143601	Lan Q	2012-11-11	Nat Genet	Genome-wide association analysis identifies new lung cancer susceptibility loci in never-smoking women in Asia.	Lung cancer	5,510 East Asian ancestry cases, 4,544 East Asian ancestry controls	1,099 East Asian ancestry cases, 2,913 East Asian ancestry controls	6p21.32	HLA class II	rs2395185-T	0.35	1E-8		1.17	[1.11-1.23]	Illumina [596032]	N
613	chr6_apd_hap1	3747550	3747551	rs2395185	22286212	Urayama KY	2012-01-27	J Natl Cancer Inst	Genome-wide association study of classical Hodgkin lymphoma and Epstein-Barr virus status-defined subgroups.	Hodgkin's lymphoma	1,200 European ancestry cases, 6,417 European ancestry controls	563 European ancestry cases, 613 European ancestry controls	6p21.32	HLA-DRA	rs2395185-?	NR	4E-31	(Total cHL)	1.82	[1.67-2.00]	Illumina [502514]	N
613	chr6_apd_hap1	3747550	3747551	rs2395185	20228799	McGovern DP	2010-03-14	Nat Genet	Genome-wide association identifies multiple ulcerative colitis susceptibility loci.	Ulcerative colitis	2,693 European ancestry cases, 6,791 European ancestry controls	2,009 European ancestry cases, 1,580 European ancestry controls	6p21.32	C6orf10, BTNL2, HLA	rs2395185-G	NR	9E-23		1.49	[NR]	Illumina [266047]	N
613	chr6_apd_hap1	3747550	3747551	rs2395185	19915573	Asano K	2009-11-15	Nat Genet	A genome-wide association study identifies three new susceptibility loci for ulcerative colitis in the Japanese population.	Ulcerative colitis	376 Japanese ancestry cases, 934 Japanese ancestry controls	376 Japanese ancestry cases, 1,097 Japanese ancestry controls	6p21.32	intergenic	rs2395185-G	0.61	5E-22		1.92	[1.68-2.19]	Illumina [513923]	N
613	chr6_apd_hap1	3747550	3747551	rs2395185	19122664	Silverberg MS	2009-01-04	Nat Genet	Ulcerative colitis-risk loci on chromosomes 1p36 and 12q15 found by genome-wide association study.	Ulcerative colitis	1,022 European ancestry cases, 2,503 European ancestry controls	1,387 European ancestry cases, 1,115 European ancestry controls	6p21.32	HLA-DQB1, HLA-DRA, BTNL2, HLA-DRB5, HLA-DRB1, HLA-DQA1	rs2395185-?	0.67	1E-16		1.52		Illumina [280748]	N
613	chr6_apd_hap1	3747659	3747660	rs2894257	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p21.32	HLA-DRADQA2	rs2894257-C	0.53	8E-36		1.36	[1.33-1.39]	Illumina [at least 560000] (imputed)	N
613	chr6_apd_hap1	3747701	3747702	rs2395190	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic sinusitis	4,617 East Asian ancestry cases, 152,226 East Asian ancestry controls	NA	6p21.32		rs2395190-T	0.301110024	1E-29		0.26669198	[0.22-0.31] unit decrease	Illumina [13426486] (imputed)	N
613	chr6_apd_hap1	3748129	3748130	rs9268948	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DRB9	rs9268948-G	NR	2E-9		0.0189254	[0.013-0.025] unit decrease	Affymetrix [319769] (imputed)	N
613	chr6_apd_hap1	3748129	3748130	rs9268948	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DRB9	rs9268948-G	NR	2E-9		0.0190762	[0.013-0.025] unit decrease	Affymetrix [319769] (imputed)	N
613	chr6_apd_hap1	3748142	3748143	rs35880697	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6p21.32	NR	rs35880697-?	NR	7E-10				Affymetrix [~ 8270000] (imputed)	N
613	chr6_apd_hap1	3749721	3749722	rs4947340	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	6p21.32	HLA-DRB9	rs4947340-T	0.40103	1E-52		0.0369333	[0.032-0.042] unit decrease	Affymetrix [93095623] (imputed)	N
613	chr6_apd_hap1	3749734	3749735	rs4947257	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p21.32	NR	rs4947257-?	NR	1E-12		0.0988	[0.071-0.126] unit decrease	Illumina [at least 560000] (imputed)	N
613	chr6_apd_hap1	3749931	3749932	rs9268989	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs9268989-A	0.378	6E-14		0.856	[0.81-0.9]	Illumina [11270530] (imputed)	N
613	chr6_apd_hap1	3750622	3750623	rs9391782	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	6p21.32		rs9391782-C	0.36641	1E-6		0.033747	[0.02-0.047] unit increase	Affymetrix [15580782] (imputed)	N
613	chr6_apd_hap1	3751926	3751927	rs9269029	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs9269029-A	0.176	2E-8		0.866	[0.82-0.92]	Illumina [11270530] (imputed)	N
613	chr6_apd_hap1	3751996	3751997	rs9405038	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	High density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	6p21.32	HLA-DRA, HLA-DRB5	rs9405038-?		1E-13		0.0366	[0.027-0.046] unit decrease	Illumina [31500000] (imputed)	N
613	chr6_apd_hap1	3752625	3752626	rs9269041	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on Dendritic Cell	2,871 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9269041-A	0.60762	1E-9		0.2062	[0.14-0.27] unit decrease	Illumina [17926566] (imputed)	N
613	chr6_apd_hap1	3754704	3754706	rs145954018	30674883	Jin Y	2019-01-23	Nat Commun	Early-onset autoimmune vitiligo associated with an enhancer variant haplotype that upregulates class II HLA expression.	Vitiligo (early onset)	704 European ancestry cases, 9,031 European ancestry controls	375 European ancestry cases, 1,455 European ancestry controls	6p21.32	NR	rs145954018-?	NR	3E-54		4.62	[4.42-4.82]	NR [up to 494043] (imputed)	N
613	chr6_apd_hap1	3755125	3755126	rs9357149	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.32		rs9357149-C	0.982	4E-24				Affymetrix [10369434] (imputed)	N
613	chr6_apd_hap1	3755351	3755352	rs9269080	30578877	Dahlin A	2018-12-19	J Allergy Clin Immunol	Large-scale, multi-ethnic genome-wide association study identifies novel loci contributing to asthma susceptibility in adults.	Adult asthma	16,274 European ancestry cases, 38,269 European ancestry controls	10,365 European ancestry cases, 16,110 European ancestry controls, cases and controls (see Moffatt et al 2010)	6p21.32	HLA-DRB9	rs9269080-?	NR	1E-8		1.098901	[1.05-1.11]	Affymetrix [7230512] (imputed)	N
613	chr6_apd_hap1	3755482	3755483	rs9269081	29196614	Sud A	2017-12-01	Nat Commun	Genome-wide association study of classical Hodgkin lymphoma identifies key regulators of disease susceptibility.	Nodular sclerosis Hodgkin lymphoma	1,278 European ancestry cases, 14,325 European ancestry controls	1,586 cases, 3,069 controls	6p21.32	HLA-DRA	rs9269081-?	NR	2E-39		1.82	[1.67-2.00]	Illumina [> 10000000] (imputed)	N
613	chr6_apd_hap1	3756078	3756079	rs2071805	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Osteoporosis	8,520 European ancestry cases, 479,981 European ancestry controls, 9,794 East Asian ancestry cases, 168,932 East Asian ancestry controls	NA	6p21.32		rs2071805-T	NR	9E-10		0.144	[0.098-0.19] unit decrease	Affymetrix, Illumina [25844994] (imputed)	N
613	chr6_apd_hap1	3756501	3756502	rs34452045	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs34452045-G	0.145	3E-31		0.694	[0.63-0.75]	Illumina [11270530] (imputed)	N
613	chr6_apd_hap1	3757605	3757606	rs9269108	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p21.32	NR	rs9269108-?	NR	3E-6		4.641	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
613	chr6_apd_hap1	3757648	3757649	rs9269109	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8+ Natural Killer T Absolute Count	3,652 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9269109-C	0.36376	3E-8		0.1671	[0.11-0.23] unit increase	Illumina [18427348] (imputed)	N
613	chr6_apd_hap1	3757648	3757649	rs9269109	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28- CD25++ CD8+ T cell Absolute Count	3,130 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9269109-C	0.35879	1E-8		0.1597	[0.11-0.21] unit increase	Illumina [18189521] (imputed)	N
613	chr6_apd_hap1	3758181	3758182	rs28895243	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	6p21.32	HLA-DRB9	rs28895243-G	0.039859	5E-20		0.05294043	[0.042-0.064] unit decrease	Affymetrix [93095623] (imputed)	N
613	chr6_apd_hap1	3758450	3758451	rs116353692	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (adrenergics, inhalants)	5,880 East Asian ancestry cases, 172,846 East Asian ancestry controls	NA	6p21.32		rs116353692-C	0.139167381	2E-13		0.21394032	[0.16-0.27] unit increase	Illumina [13429980] (imputed)	N
613	chr6_apd_hap1	3758580	3758581	rs12194148	21156761	Padyukov L	2010-12-14	Ann Rheum Dis	A genome-wide association study suggests contrasting associations in ACPA-positive versus ACPA-negative rheumatoid arthritis.	Rheumatoid arthritis	1,147 European ancestry ACPA positive RA cases, 774 European ancestry ACPA negative RA cases, 1,079 European ancestry controls	887 European ancestry ACPA positive RA cases, 1,218 European ancestry controls	6p21.32	HLA	rs12194148-?	NR	5E-58	(ACPA-positive RA vs controls)			Illumina [1723056] (imputed)	N
613	chr6_apd_hap1	3758926	3758927	rs12195582	25279986	Skibola CF	2014-10-02	Am J Hum Genet	Genome-wide association study identifies five susceptibility loci for follicular lymphoma outside the HLA region.	Follicular lymphoma	2,728 European ancestry cases, 7,758 European ancestry controls	1,795 European ancestry cases, 5,586 European ancestry controls	6p21.32	HLA	rs12195582-T	0.465	5E-100		1.78	[1.69-1.88]	Illumina [up to 21554489]	N
613	chr6_apd_hap1	3759527	3759528	rs9269136	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DRB9	rs9269136-G	NR	1E-11		0.0239787	[0.017-0.031] unit decrease	Affymetrix [321169] (imputed)	N
613	chr6_apd_hap1	3759771	3759776	rs200093869	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Iron deficiency anemia	12,317 European ancestry cases, 468,624 European ancestry controls, 4,618 East Asian ancestry cases, 174,057 East Asian ancestry controls	NA	6p21.32		rs200093869-C	NR	1E-12		0.1142	[0.083-0.146] unit increase	Affymetrix, Illumina [25844780] (imputed)	N
613	chr6_apd_hap1	3759882	3759883	rs9269143	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DRB9	rs9269143-T	NR	2E-9		0.0207074	[0.014-0.027] unit decrease	Affymetrix [319769] (imputed)	N
613	chr6_apd_hap1	3759882	3759883	rs9269143	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DRB9	rs9269143-T	NR	1E-8		0.0198652	[0.013-0.027] unit decrease	Affymetrix [319769] (imputed)	N
613	chr6_apd_hap1	3760074	3760075	rs9378212	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	6p21.32	NR	rs9378212-T	0.469078	7E-211		0.059685	[0.056-0.063] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
613	chr6_apd_hap1	3760074	3760075	rs9378212	27286809	Ligthart S	2016-06-10	BMC Genomics	Bivariate genome-wide association study identifies novel pleiotropic loci for lipids and inflammation.	C-reactive protein levels or HDL-cholesterol levels (pleiotropy)	65,000 individuals (C-reactive protein), 99,900 individuals (HDL-cholesterol)	NA	6p21.32	HLA-DRA	rs9378212-T	NR	7E-10				NR [2501543] (imputed)	N
613	chr6_apd_hap1	3760299	3760300	rs28895267	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.32		rs28895267-C	0.518	1E-110				Affymetrix [10369434] (imputed)	N
613	chr6_apd_hap1	3760299	3760300	rs28895267	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DRB9	rs28895267-T	NR	9E-16		0.0253192	[0.019-0.031] unit increase	Affymetrix [323858] (imputed)	N
613	chr6_apd_hap1	3760299	3760300	rs28895267	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	HLA-DRB9	rs28895267-T	NR	4E-15		0.0247032	[0.019-0.031] unit increase	Affymetrix [127266] (imputed)	N
613	chr6_apd_hap1	3760375	3760376	rs17209866	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p21.32	NR	rs17209866-A	0.453955	2E-344				Affymetrix, Illumina [24649327] (imputed)	N
613	chr6_apd_hap1	3760842	3760843	rs17203563	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28- CD127- CD25++ CD8+ T cell Absolute Count	3,130 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs17203563-A	0.26383	5E-8		0.1789	[0.11-0.24] unit increase	Illumina [18189521] (imputed)	N
613	chr6_apd_hap1	3761100	3761101	rs7453498	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Dementia and core Alzheimer's disease neuropathologic changes	up to 3,887 cases, up to 1,027 controls	NA	6p21.32	intergenic	rs7453498-C	0.8656	3E-6	(Complete)	0.8142	[0.47-1.16] unit increase	Affymetrix, Illumina [NR] (imputed)	N
613	chr6_apd_hap1	3761468	3761469	rs2395191	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic obstructive pulmonary disease	13,530 European ancestry cases, 454,945 European ancestry controls, 4,017 East Asian ancestry cases, 162,653 East Asian ancestry controls	NA	6p21.32		rs2395191-C	NR	9E-10		0.077	[0.052-0.102] unit increase	Affymetrix, Illumina [25843162] (imputed)	N
613	chr6_apd_hap1	3761468	3761469	rs2395191	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8 on Natural Killer T	3,103 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs2395191-C	0.36584	2E-9		0.1751	[0.12-0.23] unit increase	Illumina [18027570] (imputed)	N
613	chr6_apd_hap1	3761468	3761469	rs2395191	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs2395191-C	NR	6E-10		1.1764705	[1.12-1.24]	Affymetrix [7846216] (imputed)	N
613	chr6_apd_hap1	3762027	3762028	rs2395192	33204752	Butler-Laporte G	2020-09-24	Open Forum Infect Dis	Genetic Determinants of Antibody-Mediated Immune Responses to Infectious Diseases Agents: A Genome-Wide and HLA Association Study.	Epstein-Barr virus EA-D antibody levels	7,763 White British ancestry individuals	NA	6p21.32	HLA-DRB9	rs2395192-C	0.440	3E-16		0.13	[0.099-0.161] unit decrease	NR [25472218] (imputed)	N
613	chr6_apd_hap1	3762027	3762028	rs2395192	31102405	Labreche K	2019-05-17	Neuro Oncol	A genome-wide association study identifies susceptibility loci for primary central nervous system lymphoma at 6p25.3 and 3p22.1: a LOC network study.	Primary central nervous system lymphoma	475 European ancestry cases, 1,134 European ancestry controls	NA	6p21.32	HLA-DRA	rs2395192-C	0.59	2E-7		1.51	[1.29-1.76]	Illumina [> 10000000] (imputed)	N
613	chr6_apd_hap1	3762512	3762513	rs4410767	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p21.32		rs4410767-T	0.526	5E-70				Affymetrix [10369434] (imputed)	N
613	chr6_apd_hap1	3762781	3762782	rs9378213	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR+ CD8+ T cell Absolute Count	3,579 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9378213-T	0.69391	5E-15		0.2434	[0.18-0.3] unit decrease	Illumina [18377359] (imputed)	N
613	chr6_apd_hap1	3762781	3762782	rs9378213	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR+ CD8+ T cell %T cell	3,595 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9378213-T	0.6942999999999999	4E-11		0.1984	[0.14-0.26] unit decrease	Illumina [18380839] (imputed)	N
613	chr6_apd_hap1	3762781	3762782	rs9378213	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.32	NOTCH4, C6orf10	rs9378213-G	0.41690000000000005	4E-8	(EA)	0.0227	[0.015-0.031] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
613	chr6_apd_hap1	3762781	3762782	rs9378213	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6p21.32	BTNL2	rs9378213-G	0.41690000000000005	6E-7	(EA)	0.0232	[0.014-0.032] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
613	chr6_apd_hap1	3762781	3762782	rs9378213	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.32	NOTCH4, C6orf10	rs9378213-?	0.41690000000000005	1E-7	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
613	chr6_apd_hap1	3766219	3766220	rs62405562	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on naive-mature B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs62405562-G	0.45562	9E-11		0.1848	[0.13-0.24] unit increase	Illumina [18238311] (imputed)	N
613	chr6_apd_hap1	3766219	3766220	rs62405562	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on IgD+ CD38dim B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs62405562-G	0.45562	2E-15		0.2285	[0.17-0.28] unit increase	Illumina [18238311] (imputed)	N
613	chr6_apd_hap1	3766219	3766220	rs62405562	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on IgD+ CD24- B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs62405562-G	0.45562	1E-11		0.1942	[0.14-0.25] unit increase	Illumina [18238311] (imputed)	N
613	chr6_apd_hap1	3766219	3766220	rs62405562	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on IgD+ B cell	3,658 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs62405562-G	0.45576	2E-11		0.1921	[0.14-0.25] unit increase	Illumina [18238340] (imputed)	N
613	chr6_apd_hap1	3766282	3766283	rs2395201	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	6p21.32	NR	rs2395201-?	NR	6E-17	(CCL19)	0.579204	[0.44-0.71] unit increase	Illumina [11901634] (imputed)	N
613	chr6_apd_hap1	3766329	3766330	rs2395203	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on plasmacytoid Dendritic Cell	2,872 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs2395203-G	0.0565	3E-13		0.4964	[0.36-0.63] unit increase	Illumina [17926607] (imputed)	N
613	chr6_apd_hap1	3766436	3766437	rs2395205	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on Dendritic Cell	2,871 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs2395205-G	0.04986	7E-10		0.4528	[0.31-0.6] unit increase	Illumina [17926566] (imputed)	N
613	chr6_apd_hap1	3766527	3766528	rs1974459	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	6p21.32		rs1974459-G	0.068544	5E-19		0.040665817	[0.032-0.05] unit increase	Affymetrix [93095623] (imputed)	N
613	chr6_apd_hap1	3766587	3766588	rs1557550	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	6p21.32		rs1557550-T	0.0574940000000001	7E-28		0.0534048	[0.044-0.063] unit increase	Affymetrix [93095623] (imputed)	N
613	chr6_apd_hap1	3766792	3766793	rs2395209	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Receptor for advanced glycosylation end products levels	21,758 European ancestry individuals	9,173 individuals	6p21.32		rs2395209-T	0.16	1E-17		0.1071	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
613	chr6_apd_hap1	3766855	3766856	rs28599891	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	6p21.32	intergenic	rs28599891-G	0.7051	5E-14		0.03041702	[0.023-0.038] unit increase	Affymetrix [~ 2500000] (imputed)	N
613	chr6_apd_hap1	3766972	3766973	rs28368843	33119750	Vergara C	2020-10-29	J Infect Dis	A multi-ancestry sex stratified genome-wide association study of spontaneous clearance of hepatitis C virus.	Hepatitis C (spontaneous viral clearance)	239 African ancestry male cases, 1,184 African ancestry male controls, 206 African ancestry female cases, 572 African ancestry female controls, 489 European ancestry male cases, 703 European ancestry male controls, 212 European ancestry female cases, 332 European ancestry female controls, 91 Hispanic male cases, 197 Hispanic male controls, 82 Hispanic female cases, 116 Hispanic female controls	NA	6p21.32	NR	rs28368843-T	0.07	5E-7	(female)	2.38	[NR]	Illumina [5730693] (imputed)	N
613	chr6_apd_hap1	3766987	3766988	rs28453249	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	HLA-DRB9	rs28453249-T	NR	2E-13		0.021088	[0.015-0.027] unit increase	Affymetrix [321114] (imputed)	N
613	chr6_apd_hap1	3767011	3767012	rs28561769	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p21.32	NR	rs28561769-G	0.459185	3E-228				Affymetrix, Illumina [23114412] (imputed)	N
613	chr6_apd_hap1	3767576	3767577	rs6916742	26819262	Zhou Y	2016-01-27	Mult Scler	Genetic loci for Epstein-Barr virus nuclear antigen-1 are associated with risk of multiple sclerosis.	Epstein Barr virus nuclear antigen 1 IgG levels	1,243 parents and up to 2,356 children from 992 families, 1,956 Mexican American individuals		6p21.32	HLA-DRA, HLA-DRB5, HLA-DQA1, HLA-DRB1	rs6916742-C	0.569	6E-6	(non-Mexican American children)	0.16	unit decrease	Illumina [up to 2428201] (imputed)	N
613	chr6_apd_hap1	3767656	3767657	rs138024423	33589587	Sakaue S	2021-02-15	Nat Commun	Genetic determinants of risk in autoimmune pulmonary alveolar proteinosis.	Autoimmune pulmonary alveolar proteinosis	198 Japanese ancestry cases, 395 Japanese ancestry controls	NA	6p21.32		rs138024423-G	0.072	2E-12		5.2	[3.3-8.2]	Illumina [12153232] (imputed)	N
613	chr6_apd_hap1	3767975	3767976	rs76733997	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DRB9	rs76733997-A	NR	3E-13		0.0290897	[0.021-0.037] unit decrease	Affymetrix [323858] (imputed)	N
613	chr6_apd_hap1	3768238	3768239	rs112112734	31596875	Traylor M	2019-10-09	PLoS One	Genetic associations with radiological damage in rheumatoid arthritis: Meta-analysis of seven genome-wide association studies of 2,775 cases.	Joint damage in rheumatoid arthritis	2,527 European ancestry individuals, 196 African ancestry individuals, 52 individuals	NA	6p21.32	HLA-DRB5, HLA-DRB6, HLA-DRB1	rs112112734-?	NR	4E-8				Affymetrix, Illumina [4802696] (imputed)	N
613	chr6_apd_hap1	3768238	3768239	rs112112734	31596875	Traylor M	2019-10-09	PLoS One	Genetic associations with radiological damage in rheumatoid arthritis: Meta-analysis of seven genome-wide association studies of 2,775 cases.	Joint damage in rheumatoid arthritis	2,527 European ancestry individuals	NA	6p21.32	intergenic	rs112112734-?	NR	9E-8				Affymetrix, Illumina [2723488] (imputed)	N
613	chr6_apd_hap1	3768321	3768322	rs112062732	32723749	Kwon YC	2020-07-28	Ann Rheum Dis	Genome-wide association study in a Korean population identifies six novel susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis	4,068 Korean ancestry cases, 36,487 Korean ancestry controls	NA	6p21.32	HLA-DRB1	rs112062732-?		6E-227		2.44	[2.31-2.58]	Illumina [NR] (imputed)	N
613	chr6_apd_hap1	3768321	3768322	rs112062732	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	6p21.32	intergenic	rs112062732-C	0.4128	3E-30		0.04384147	[0.036-0.051] unit increase	Affymetrix [~ 2500000] (imputed)	N
613	chr6_apd_hap1	3768674	3768675	rs75219938	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs75219938-T	0.299	7E-13	(Rac GTPase-activating protein 1, RACGAP1.13587.10.3)	0.22	[0.16-0.28] unit decrease	Affymetrix [10572788] (imputed)	N
613	chr6_apd_hap1	3768674	3768675	rs75219938	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs75219938-T	0.299	4E-49	(HLA class II histocompatibility antigen, DQ alpha 2 chain, HLA.DQA2.7757.5.3)	0.45	[0.39-0.51] unit increase	Affymetrix [10572788] (imputed)	N
613	chr6_apd_hap1	3776080	3776081	rs1059362	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs1059362-A	0.17	7E-35	(Complement C4, C4A.C4B.4481.34.2)	0.45	[0.37-0.53] unit increase	Affymetrix [10572788] (imputed)	N
613	chr6_apd_hap1	3776264	3776265	rs9269771	33204752	Butler-Laporte G	2020-09-24	Open Forum Infect Dis	Genetic Determinants of Antibody-Mediated Immune Responses to Infectious Diseases Agents: A Genome-Wide and HLA Association Study.	Anti-Merkel cell polyomavirus IgG seropositivity	8,735 White British ancestry individuals	NA	6p21.32	HLA-DRB1	rs9269771-T	0.252	7E-37		0.12	[0.10-0.14] unit decrease	NR [25472218] (imputed)	N
613	chr6_apd_hap1	3776451	3776452	rs149717632	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Antisaccade task score	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	6p21.32	HLA-DRB1	rs149717632-G	NR	3E-6		0.15448512	[0.094-0.215] unit decrease	Illumina [> 6200000] (imputed)	N
613	chr6_apd_hap1	3777014	3777015	rs707954	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6p21.32	NR	rs707954-A	0.3039	1E-13		1.062	[1.046-1.078]	Affymetrix [15688218] (imputed)	N
613	chr6_apd_hap1	3777044	3777045	rs112796209	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	6p21.32	NR	rs112796209-?	NR	1E-10				Affymetrix [~ 8270000] (imputed)	N
613	chr6_apd_hap1	3777387	3777388	rs41293179	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.32	HLA-DRB1, HLA-DRB5, HLA-DRB6	rs41293179-?		2E-11		1.1111112	[1.08-1.14]	Affymetrix, Illumina [NR]	N
613	chr6_apd_hap1	3777423	3777424	rs142790902	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.32	HLA-DRB1	rs142790902-T		1E-11		1.22	[1.15-1.29]	Affymetrix, Illumina [NR]	N
613	chr6_apd_hap1	3777626	3777627	rs35789108	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs35789108-?	NR	2E-23				Affymetrix [~ 8270000] (imputed)	N
613	chr6_apd_hap1	3777823	3777824	rs9269853	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease (late onset)	24,087 European ancestry cases, 55,058 European ancestry controls	NA	6p21.32	HLA-DRB1	rs9269853-A	NR	3E-8		5.5623274	NR z-score increase	Illumina [up to 9862738] (imputed)	N
615	chr6_apd_hap1	3970650	3970651	rs9275601	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.32		rs9275601-C	0.559	2E-19				Affymetrix [10369434] (imputed)	N
615	chr6_apd_hap1	3970650	3970651	rs9275601	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.32		rs9275601-C	0.559	1E-20				Affymetrix [10369434] (imputed)	N
615	chr6_apd_hap1	3970798	3970799	rs9275602	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	XXbac-BPG254F23.7	rs9275602-A	NR	1E-8		0.0219542	[0.014-0.029] unit increase	Affymetrix [323123] (imputed)	N
615	chr6_apd_hap1	3970798	3970799	rs9275602	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs9275602-?	NR	8E-10				Affymetrix [~ 8270000] (imputed)	N
615	chr6_apd_hap1	3970798	3970799	rs9275602	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	6p21.32	NR	rs9275602-?	NR	5E-29	(conditional)			Affymetrix [15688218] (imputed)	N
615	chr6_apd_hap1	3971550	3971551	rs200025476	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.32	NR	rs200025476-T	0.011	3E-9		0.507765	[0.34-0.67] unit increase	Affymetrix [up to 8900000] (imputed)	N
615	chr6_apd_hap1	3971550	3971551	rs200025476	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.32	NR	rs200025476-T	0.011	2E-6	(women)	0.688868	[0.41-0.97] unit increase	Affymetrix [up to 8900000] (imputed)	N
615	chr6_apd_hap1	3971666	3971667	rs9391746	33961016	Moksnes MR	2021-05-07	Hum Mol Genet	Genome-wide association study of cardiac troponin I in the general population.	High-sensitivity cardiac troponin I concentration	48,115 European ancestry individuals	NA	6p21.32		rs9391746-T	0.0718	1E-8		0.08	[0.06-0.1] unit increase	Illumina [26711992] (imputed)	N
615	chr6_apd_hap1	3972330	3972331	rs5024431	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6p21.32		rs5024431-?	NR	6E-17		0.897905	[0.87-0.92]	NR [685523]	N
615	chr6_apd_hap1	3972500	3972501	rs6457637	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on plasmacytoid Dendritic Cell	2,872 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs6457637-G	0.07647	9E-15		0.4484	[0.34-0.56] unit decrease	Illumina [17926607] (imputed)	N
615	chr6_apd_hap1	3972921	3972922	rs9275642	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Skin cancer	25,928 European ancestry cases, 466,275 European ancestry controls, 154 East Asian ancestry cases, 178,572 East Asian ancestry controls	NA	6p21.32		rs9275642-T	NR	4E-21		0.1097	[0.087-0.132] unit decrease	Affymetrix, Illumina [25845421] (imputed)	N
615	chr6_apd_hap1	3972921	3972922	rs9275642	27539887	Chahal HS	2016-08-19	Nat Commun	Genome-wide association study identifies 14 novel risk alleles associated with basal cell carcinoma.	Basal cell carcinoma	12.945 European ancestry cases, 274,252 European ancestry controls	4,242 European ancestry cases, 12,802 European ancestry controls	6p21.32	HLA-DQA2	rs9275642-C	0.79	2E-12		1.1235955	[NR]	Illumina [at least 560000] (imputed)	N
615	chr6_apd_hap1	3973184	3973185	rs41288885	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.32	XXbac-BPG254F23.7	rs41288885-G	0.058676	5E-9		0.028841805	[0.019-0.039] unit increase	Affymetrix [93095623] (imputed)	N
615	chr6_apd_hap1	3973184	3973185	rs41288885	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.32	NR	rs41288885-?	NR	9E-10				Affymetrix [~ 8270000] (imputed)	N
615	chr6_apd_hap1	3973366	3973367	rs3998154	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.32		rs3998154-G	0.585	9E-27				Affymetrix [10369434] (imputed)	N
615	chr6_apd_hap1	3973366	3973367	rs3998154	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p21.32		rs3998154-G	0.585	1E-22				Affymetrix [10369434] (imputed)	N
615	chr6_apd_hap1	3973536	3973537	rs3916765	34716350	Lin WY	2021-10-29	Nat Commun	Genome-wide association study identifies susceptibility loci for acute myeloid leukemia.	Acute myeloid leukemia (normal cytogenetics)	3,041 European ancestry cases, 6,760 European ancestry controls	977 European ancestry cases, 3,728 European ancestry controls	6p21.32		rs3916765-G	NR	2E-10		1.72	[1.46-2.03]	Affymetrix, Illumina [6496414] (imputed)	N
615	chr6_apd_hap1	3973536	3973537	rs3916765	22693455	Perry JR	2012-05-31	PLoS Genet	Stratifying type 2 diabetes cases by BMI identifies genetic risk variants in LAMA1 and enrichment for risk variants in lean compared to obese cases.	Type 2 diabetes	2,112 lean type 2 diabetes cases, 4,123 obese type 2 diabetes cases, 54,412 controls	2,881 lean type 2 diabetes cases, 8,702 obese type 2 diabetes cases, 18,957 controls	6p21.32	HLA-DQA2	rs3916765-A	0.12	1E-6	(Lean)	1.21	[1.12-1.31]	NR [NR]	N
615	chr6_apd_hap1	3974615	3974616	rs9275667	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	XXbac-BPG254F23.7	rs9275667-T	NR	1E-15		0.0312755	[0.024-0.039] unit decrease	Affymetrix [323858] (imputed)	N
615	chr6_apd_hap1	3974615	3974616	rs9275667	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	XXbac-BPG254F23.7	rs9275667-T	NR	6E-15		0.0304364	[0.023-0.038] unit decrease	Affymetrix [127266] (imputed)	N
615	chr6_apd_hap1	3975932	3975933	rs9275698	21804548	Hirota T	2011-07-31	Nat Genet	Genome-wide association study identifies three new susceptibility loci for adult asthma in the Japanese population.	Asthma	1,532 Japanese ancestry cases, 3,304 Japanese ancestry controls	5,639 Japanese ancestry cases, 24,608 Japanese ancestry controls	6p21.32	HLA-DQA2	rs9275698-T	0.79	5E-12		1.18	[1.12-1.24]	Illumina [458847]	N
615	chr6_apd_hap1	3976179	3976180	rs9275710	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	XXbac-BPG254F23.7	rs9275710-T	NR	1E-9		0.0190333	[0.013-0.025] unit decrease	Affymetrix [323858] (imputed)	N
615	chr6_apd_hap1	3976179	3976180	rs9275710	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	XXbac-BPG254F23.7	rs9275710-T	NR	9E-9		0.018054	[0.012-0.024] unit decrease	Affymetrix [127266] (imputed)	N
615	chr6_apd_hap1	3977864	3977865	rs117522574	32771030	Tangtanatakul P	2020-08-08	Arthritis Res Ther	Meta-analysis of genome-wide association study identifies FBN2 as a novel locus associated with systemic lupus erythematosus in Thai population.	Systemic lupus erythematosus	487 Thai cases, 1,606 Thai controls	405 Thai cases, 1,590 Thai controls	6p21.32	XXbac-BPG254F23.7, HLA-DQB3	rs117522574-G	0.19	3E-8		1.5082	[NR]	Illumina [421909] (imputed)	N
615	chr6_apd_hap1	3979011	3979012	rs9275844	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	XXbac-BPG254F23.7	rs9275844-T	NR	2E-8		0.0217782	[0.014-0.029] unit increase	Affymetrix [323123] (imputed)	N
615	chr6_apd_hap1	3981235	3981236	rs2858892	30657218	Park SY	2019-01-18	Clin Exp Allergy	Longitudinal analysis to better characterize Asthma-COPD Overlap Syndrome (ACOS): Findings from an adult asthma cohort in Korea (COREA).	Adult asthma	731 Korean ancestry cases, 5,915 Korean ancestry controls	NA	6p21.32	NR	rs2858892-?	NR	4E-7		1.34		NR [267429]	N
615	chr6_apd_hap1	3981984	3981985	rs114803904	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs114803904-C	0.474	1E-24	(cAMP-specific 3',5'-cyclic phosphodiesterase 4D, PDE4D.5255.22.3)	0.29	[0.23-0.35] unit increase	Affymetrix [10572788] (imputed)	N
615	chr6_apd_hap1	3983046	3983047	rs73732611	33558538	Gebresilase T	2021-02-08	Sci Rep	Replication of HLA class II locus association with susceptibility to podoconiosis in three Ethiopian ethnic groups.	Podoconiosis	1,137 Ethiopian ancestry cases, 1,152 Ethiopian ancestry controls	NA	6p21.32	HLA-DQB3	rs73732611-C	0.07	5E-9				Illumina [2201695]	N
615	chr6_apd_hap1	3985755	3985756	rs2859113	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	NR	rs2859113-C	0.378328302013423	6E-8	(IGP59)	0.1817	[0.12-0.25] unit decrease	Illumina [~ 2500000] (imputed)	N
615	chr6_apd_hap1	3988042	3988043	rs2858884	20711174	Hor H	2010-08-15	Nat Genet	Genome-wide association study identifies new HLA class II haplotypes strongly protective against narcolepsy.	Narcolepsy	562 European ancestry cases, 702 European ancestry controls	370 cases, 495 controls	6p21.32	HLA-DQA2	rs2858884-A	0.81	3E-8		1.79	[1.45-2.17]	Affymetrix [392949]	N
615	chr6_apd_hap1	3989181	3989182	rs9276244	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	IgA levels	16,883 Icelandic ancestry individuals	2,151 Swedish ancestry individuals	6p21.32	HLA-DQA2	rs9276244-G	0.328	3E-14		0.09	NR SD units increase	Illumina [21568490] (imputed)	N
615	chr6_apd_hap1	3989935	3989936	rs9276263	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p21.32	NR	rs9276263-?	NR	7E-16		0.1146	[0.087-0.142] unit increase	Illumina [at least 560000] (imputed)	N
615	chr6_apd_hap1	3995248	3995249	rs9276370	32004448	Savage SA	2020-01-30	Am J Hum Genet	Genome-wide Association Study Identifies HLA-DPB1 as a Significant Risk Factor for Severe Aplastic Anemia.	Severe aplastic anemia	359 European ancestry cases, 1,396 European ancestry controls	175 European ancestry cases, 1,059 European ancestry controls	6p21.32	HLA-DQA2, HLA-DQB2	rs9276370-?	NR	5E-7		1.41	[1.23-1.62]	Illumina [688067]	N
615	chr6_apd_hap1	3995248	3995249	rs9276370	24940741	Chang SW	2014-06-18	PLoS One	A genome-wide association study on chronic HBV infection and its clinical progression in male Han-Taiwanese.	Chronic hepatitis B infection	321 Chinese ancestry cases, 304 Chinese ancestry controls	1,302 Chinese ancestry cases, 761 Chinese ancestry controls	6p21.32	HLA-DQA2	rs9276370-T	0.076	2E-12		1.95	[1.62-2.34]	Illumina [456262]	N
615	chr6_apd_hap1	3996643	3996643	rs11426605	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs11426605-T	0.966	3E-15	(conditional)	0.648	[0.54-0.76]	Illumina [11270530] (imputed)	N
615	chr6_apd_hap1	3998497	3998498	rs9461806	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.32		rs9461806-C	0.595	2E-17				Affymetrix [10369434] (imputed)	N
615	chr6_apd_hap1	3998497	3998498	rs9461806	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.32		rs9461806-C	0.595	1E-25				Affymetrix [10369434] (imputed)	N
615	chr6_apd_hap1	3998683	3998684	rs115018313	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	6p21.32		rs115018313-C	NR	7E-33		0.284	[0.24-0.33] unit increase	Affymetrix, Illumina [25845091] (imputed)	N
615	chr6_apd_hap1	3999131	3999132	rs9276423	26379185	Garcia-Etxebarria K	2015-09-17	PLoS One	No Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity.	Mild influenza (H1N1) infection	107 European ancestry mild cases, 549 European ancestry population controls	NA	6p21.32	HLA-DQA2	rs9276423-?	0.0	3E-8				Affymetrix [547296]	N
615	chr6_apd_hap1	4000133	4000134	rs9276427	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first birth	542,901 European ancestry individuals	NA	6p21.32	HLA-DQA2	rs9276427-T	0.5217	3E-8		0.0532	[0.034-0.072] unit increase	NR [9744772] (imputed)	N
615	chr6_apd_hap1	4000133	4000134	rs9276427	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQA2	rs9276427-C	NR	6E-9		0.0164173	[0.011-0.022] unit increase	Affymetrix [319769] (imputed)	N
615	chr6_apd_hap1	4000133	4000134	rs9276427	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DQA2	rs9276427-C	NR	1E-8		0.0160937	[0.011-0.022] unit increase	Affymetrix [319769] (imputed)	N
615	chr6_apd_hap1	4000133	4000134	rs9276427	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DQA2	rs9276427-C	NR	3E-8		0.0158296	[0.01-0.021] unit increase	Affymetrix [321169] (imputed)	N
615	chr6_apd_hap1	4000133	4000134	rs9276427	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.32		rs9276427-C	0.49390500000000004	2E-10		1.0275491	[1.02-1.03]	Affymetrix, Illumina [9851866] (imputed)	N
615	chr6_apd_hap1	4000285	4000286	rs41288889	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs41288889-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
615	chr6_apd_hap1	4000943	4000944	rs9276434	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	6p21.32	HLA-DQA2	rs9276434-T	NR	4E-17		0.0479129	[0.037-0.059] unit decrease	Illumina [13520550] (imputed)	N
615	chr6_apd_hap1	4002144	4002145	rs9276435	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cervical cancer	6,563 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs9276435-C	NR	2E-10		1.1631	NR	Affymetrix [7846216] (imputed)	N
615	chr6_apd_hap1	4009698	4009699	rs2077046	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQB2	rs2077046-C	NR	2E-8		0.0159433	[0.01-0.021] unit increase	Affymetrix [319769] (imputed)	N
615	chr6_apd_hap1	4013471	4013472	rs2301271	21408207	Chung SA	2011-03-03	PLoS Genet	Differential genetic associations for systemic lupus erythematosus based on anti-dsDNA autoantibody production.	Systemic lupus erythematosus	811 anti-dsDNA positive European ancestry cases, 906 anti-dsDNA negative European ancestry cases, 4,813 European ancestry controls	NA	6p21.32	HLA-DQA2	rs2301271-T	0.40	2E-12	(anti-dsDNA -)	1.47	[1.32-1.63]	Illumina [421318] (imputed)	N
615	chr6_apd_hap1	4014552	4014553	rs9276578	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p21.32	HLA-DQB2	rs9276578-G	NR	2E-9		0.0231702	[0.016-0.031] unit decrease	Affymetrix [323858] (imputed)	N
615	chr6_apd_hap1	4015081	4015082	rs1049110	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	HLA-DQA2, HLA-DQB2	rs1049110-C	0.346381764494382	2E-8	(IGP42)	0.1909	[0.12-0.26] unit increase	Illumina [~ 2500000] (imputed)	N
615	chr6_apd_hap1	4015081	4015082	rs1049110	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	HLA-DQA2, HLA-DQB2	rs1049110-C	0.34601888034188	4E-8	(IGP2)	0.1853	[0.12-0.25] unit increase	Illumina [~ 2500000] (imputed)	N
615	chr6_apd_hap1	4015487	4015488	rs9276580	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.32		rs9276580-T	0.46	8E-18				Affymetrix [10369434] (imputed)	N
615	chr6_apd_hap1	4015603	4015604	rs7753017	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs7753017-A	0.237	5E-43		0.745	[0.7-0.79]	Illumina [11270530] (imputed)	N
615	chr6_apd_hap1	4016920	4016921	rs2395258	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	6p21.32	HLA-DQB2	rs2395258-T	NR	6E-9		0.0205128	[0.014-0.027] unit increase	Illumina [13519193] (imputed)	N
615	chr6_apd_hap1	4017336	4017337	rs2006163	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.32		rs2006163-A	0.462	4E-35				Affymetrix [10369434] (imputed)	N
615	chr6_apd_hap1	4018012	4018013	rs2008560	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQB2	rs2008560-G	NR	3E-12		0.0196979	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
615	chr6_apd_hap1	4018012	4018013	rs2008560	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DQB2	rs2008560-G	NR	2E-11		0.0189439	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
615	chr6_apd_hap1	4018012	4018013	rs2008560	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DQB2	rs2008560-G	NR	1E-10		0.0183237	[0.013-0.024] unit increase	Affymetrix [321169] (imputed)	N
615	chr6_apd_hap1	4018012	4018013	rs2008560	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling worry	372,869 European ancestry individuals	NA	6p21.32	C4B	rs2008560-C	0.496591	3E-8		5.56	unit decrease	NR [10847151] (imputed)	N
615	chr6_apd_hap1	4018290	4018291	rs7453920	27244555	Li Y	2016-05-31	Nat Commun	Genome-wide association study identifies 8p21.3 associated with persistent hepatitis B virus infection among Chinese.	Persistent hepatitis B virus infection	1,251 Chinese ancestry persistently infected cases, 1,057 Chinese ancestry spontaneously recovered controls	3,905 Chinese ancestry persistently infected cases, 3,356 Chinese ancestry spontaneously recovered controls	6p21.32	HLA-DQB2	rs7453920-A		6E-6		2.0	[1.47-2.78]	Affymetrix, Illumina [up to 4494311] (imputed)	N
615	chr6_apd_hap1	4018290	4018291	rs7453920	25802187	Jiang DK	2015-04-28	Hepatology	Genetic variants in five novel loci including CFB and CD40 predispose to chronic hepatitis B.	Chronic hepatitis B infection	2,514 Chinese ancestry cases, 1,130 Chinese ancestry controls	6,600 Chinese ancestry cases, 8,127 Chinese ancestry controls	6p21.32	HLA-DQB2	rs7453920-A	0.88	1E-60		2.0	[1.82-2.17]	Illumina [3680900] (imputed)	N
615	chr6_apd_hap1	4018290	4018291	rs7453920	24940741	Chang SW	2014-06-18	PLoS One	A genome-wide association study on chronic HBV infection and its clinical progression in male Han-Taiwanese.	Chronic hepatitis B infection	321 Chinese ancestry cases, 304 Chinese ancestry controls	1,302 Chinese ancestry cases, 761 Chinese ancestry controls	6p21.32	HLA-DQB2	rs7453920-G	0.051	7E-15		2.31	[1.87-2.85]	Illumina [456262]	N
615	chr6_apd_hap1	4018290	4018291	rs7453920	24162738	Hu Z	2013-10-27	Nat Genet	New loci associated with chronic hepatitis B virus infection in Han Chinese.	Hepatitis B	951 Han Chinese ancestry HBV carrier cases, 937 Han Chinese ancestry HBV cleared controls	4,230 Chinese ancestry HBV carrier cases, 3,051 Chinese ancestry HBV cleared controls, 2,622 Chinese ancestry controls	6p21.32	HLA-DQB2	rs7453920-G	0.87	5E-37		1.8868	[1.69-2.08]	Illumina [490610]	N
615	chr6_apd_hap1	4018290	4018291	rs7453920	23760081	Kim YJ	2013-06-10	Hum Mol Genet	A genome-wide association study identified new variants associated with the risk of chronic hepatitis B.	Chronic hepatitis B infection	400 Korean ancestry cases, 1,000 Korean ancestry controls	971 Korean ancestry cases, 1,938 Korean ancestry controls	6p21.32	HLA-DQ	rs7453920-?	NR	7E-26		2.0	[1.72-2.27]	Illumina [719265]	N
615	chr6_apd_hap1	4018290	4018291	rs7453920	23349640	Vijai J	2013-01-17	PLoS Genet	Susceptibility loci associated with specific and shared subtypes of lymphoid malignancies.	Lymphoma	275 Follicular non-Hodgkin's Lymphoma cases, 269 diffuse large B-cell non-Hodgkin's Lymphoma cases, 198 other non-Hodgkin's Lymphoma cases, 202 Hodgkin's Lymphoma cases, 4,044 controls	202 European ancestry Follicular non-Hodgkin's Lymphoma cases, 367 European ancestry diffuse large B-cell non-Hodgkin's Lymphoma cases, 577 European ancestry other non-Hodgkin's Lymphoma cases, 99 European ancestry Hodgkin's Lymphoma cases, 2,596 European ancestry controls	6p21.32	HLA-DQB2	rs7453920-?	NR	5E-6	(LYM)	1.19	[1.11-1.3]	Affymetrix [530583]	N
615	chr6_apd_hap1	4018290	4018291	rs7453920	21750111	Mbarek H	2011-07-12	Hum Mol Genet	A genome-wide association study of chronic hepatitis B identified novel risk locus in a Japanese population.	Hepatitis B	458 Japanese ancestry cases, 2,056 Japanese ancestry controls	2,209 Japanese ancestry cases, 4,440 Japanese ancestry controls	6p21.32	HAL-DQB2	rs7453920-G	0.83	6E-28		1.81	[1.62-2.01]	Illumina [423627]	N
615	chr6_apd_hap1	4018364	4018365	rs2051549	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DQB2	rs2051549-G	NR	4E-9		0.0181006	[0.012-0.024] unit increase	Affymetrix [323123] (imputed)	N
615	chr6_apd_hap1	4018364	4018365	rs2051549	23053960	Lee YH	2012-10-07	Mol Biol Rep	Genome-wide pathway analysis of genome-wide association studies on systemic lupus erythematosus and rheumatoid arthritis.	Systemic lupus erythematosus	1,527 European ancestry cases, 3,421 European ancestry controls,	NA	6p21.32	HLA-DQA2	rs2051549-?	NR	3E-22				Illumina [737984]	N
615	chr6_apd_hap1	4019218	4019219	rs2071550	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	6p21.32	SLC44A4, EHMT2, HLA-DQB2, STK19, CYP21A2, TNXB	rs2071550-?	NR	7E-6				Affymetrix, Illumina [18800000] (imputed)	N
615	chr6_apd_hap1	4019218	4019219	rs2071550	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	6p21.32	SLC44A4, EHMT2, HLA-DQB2, STK19, CYP21A2, TNXB	rs2071550-?	NR	1E-9	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
615	chr6_apd_hap1	4019218	4019219	rs2071550	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	6p21.32	SLC44A4, EHMT2, HLA-DQB2, STK19, CYP21A2, TNXB	rs2071550-?	NR	5E-8	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
615	chr6_apd_hap1	4021907	4021908	rs33998906	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQB2	rs33998906-T	NR	5E-8		0.0304833	[0.02-0.041] unit increase	Affymetrix [319769] (imputed)	N
615	chr6_apd_hap1	4021907	4021908	rs33998906	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DQB2	rs33998906-T	NR	2E-8		0.0314602	[0.021-0.042] unit increase	Affymetrix [319769] (imputed)	N
615	chr6_apd_hap1	4022585	4022586	rs9276601	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQB2	rs9276601-G	NR	4E-8		0.0202269	[0.013-0.027] unit decrease	Affymetrix [319769] (imputed)	N
615	chr6_apd_hap1	4024286	4024287	rs9296042	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Scarlet fever	6,812 European ancestry cases, 113,837 European ancestry controls	NA	6p21.32	NR	rs9296042-?	NR	3E-6		0.0873	[0.051-0.124] unit decrease	Illumina [at least 560000] (imputed)	N
615	chr6_apd_hap1	4024976	4024977	rs9276606	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DQB2	rs9276606-T	NR	1E-9		0.021091	[0.014-0.028] unit decrease	Affymetrix [323858] (imputed)	N
615	chr6_apd_hap1	4024976	4024977	rs9276606	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	HLA-DQB2	rs9276606-T	NR	2E-9		0.0208414	[0.014-0.028] unit decrease	Affymetrix [127266] (imputed)	N
615	chr6_apd_hap1	4024976	4024977	rs9276606	23028341	Yang X	2012-09-13	PLoS Genet	Genome-wide association study for serum complement C3 and C4 levels in healthy Chinese subjects.	Complement C3 and C4 levels	1,999 Han Chinese ancestry male individuals	1,496 Han Chinese ancestry male individuals	6p21.32	HLA-DQB	rs9276606-T	0.15	3E-22	(Serum level of C4)	0.09	[0.070-0.110] g/L decrease	Illumina [1940245] (imputed)	N
615	chr6_apd_hap1	4028692	4028693	rs2857212	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.32		rs2857212-A	0.635	2E-33				Affymetrix [10369434] (imputed)	N
615	chr6_apd_hap1	4028692	4028693	rs2857212	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.32		rs2857212-A	0.635	2E-31				Affymetrix [10369434] (imputed)	N
615	chr6_apd_hap1	4028692	4028693	rs2857212	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.32		rs2857212-A	0.635	2E-57				Affymetrix [10369434] (imputed)	N
615	chr6_apd_hap1	4029285	4029286	rs2621419	33235445	Lee YJ	2020-11-17	Int J Chron Obstruct Pulmon Dis	A Genome-Wide Association Study in Early COPD: Identification of One Major Susceptibility Loci.	Early chronic obstructive pulmonary disease in never smokers	38 Korean ancestry cases, 1,778 Korean ancestry controls	NA	6p21.32	HLA-DQB2	rs2621419-?	NR	9E-6		0.68	NR	Affymetrix [345072]	N
615	chr6_apd_hap1	4030147	4030148	rs2621416	23349640	Vijai J	2013-01-17	PLoS Genet	Susceptibility loci associated with specific and shared subtypes of lymphoid malignancies.	Lymphoma	275 Follicular non-Hodgkin's Lymphoma cases, 269 diffuse large B-cell non-Hodgkin's Lymphoma cases, 198 other non-Hodgkin's Lymphoma cases, 202 Hodgkin's Lymphoma cases, 4,044 controls	202 European ancestry Follicular non-Hodgkin's Lymphoma cases, 367 European ancestry diffuse large B-cell non-Hodgkin's Lymphoma cases, 577 European ancestry other non-Hodgkin's Lymphoma cases, 99 European ancestry Hodgkin's Lymphoma cases, 2,596 European ancestry controls	6p21.32	HLA-DQB2, TAP2	rs2621416-G	NR	2E-9	(FL)	1.57	[NR]	Affymetrix [530583]	N
615	chr6_apd_hap1	4030374	4030375	rs9276610	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DQB2	rs9276610-A	NR	1E-9		0.0272626	[0.018-0.036] unit increase	Affymetrix [323123] (imputed)	N
615	chr6_apd_hap1	4031104	4031105	rs12663317	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	6p21.32	NR	rs12663317-?	NR	6E-12				Affymetrix [~ 8270000] (imputed)	N
615	chr6_apd_hap1	4032639	4032640	rs2857204	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	6p21.32	intergenic	rs2857204-T	0.327	9E-19		0.03378215	[0.026-0.041] unit decrease	Affymetrix [~ 2500000] (imputed)	N
615	chr6_apd_hap1	4032732	4032733	rs28724893	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQB2	rs28724893-T	NR	2E-8		0.0157586	[0.01-0.021] unit decrease	Affymetrix [319769] (imputed)	N
615	chr6_apd_hap1	4032732	4032733	rs28724893	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DQB2	rs28724893-T	NR	4E-11		0.0202278	[0.014-0.026] unit increase	Affymetrix [323123] (imputed)	N
615	chr6_apd_hap1	4033125	4033126	rs9276643	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6p21.32	NR	rs9276643-C	0.6647	8E-12		1.0858942	[1.06-1.11]	Affymetrix [15688218] (imputed)	N
615	chr6_apd_hap1	4033125	4033126	rs9276643	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	6p21.32	NR	rs9276643-?	NR	7E-105	(conditional)			Affymetrix [15688218] (imputed)	N
615	chr6_apd_hap1	4033818	4033819	rs12661352	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs12661352-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
615	chr6_apd_hap1	4034620	4034621	rs9501203	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.32		rs9501203-T	0.677	8E-12				Affymetrix [10369434] (imputed)	N
615	chr6_apd_hap1	4037223	4037224	rs28986343	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous malignant melanoma	36,760 European ancestry cases, 375,188 European ancestry controls	NA	6p21.32	HLA-DQB2	rs28986343-C	0.952	2E-8		1.1531	NR	Affymetrix, Illumina [NR] (imputed)	N
615	chr6_apd_hap1	4039317	4039318	rs7749543	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6p21.32	NR	rs7749543-G	0.6269	8E-10		1.0775862	[1.05-1.1]	Affymetrix [15688218] (imputed)	N
615	chr6_apd_hap1	4039317	4039318	rs7749543	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	6p21.32	NR	rs7749543-?	NR	8E-115	(conditional)			Affymetrix [15688218] (imputed)	N
615	chr6_apd_hap1	4039317	4039318	rs7749543	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p21.32	NR	rs7749543-?	NR	3E-6		0.0596	[0.035-0.085] unit increase	Illumina [at least 560000] (imputed)	N
615	chr6_apd_hap1	4046294	4046295	rs7758736	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DOB	rs7758736-A	NR	1E-9		0.02222	[0.015-0.029] unit decrease	Affymetrix [321169] (imputed)	N
615	chr6_apd_hap1	4049409	4049410	rs4318925	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DOB	rs4318925-T	NR	3E-9		0.0220014	[0.015-0.029] unit decrease	Affymetrix [321169] (imputed)	N
615	chr6_apd_hap1	4051418	4051419	rs2857151	22446962	Onouchi Y	2012-03-25	Nat Genet	A genome-wide association study identifies three new risk loci for Kawasaki disease.	Kawasaki disease	428 Japanese ancestry cases, 3,379 Japanese ancestry controls	754 Japanese ancestry cases, 947 Japanese ancestry controls	6p21.32	HLA-DOB, HLA-DQB2	rs2857151-G	0.76	5E-11		1.47	[1.23-1.77]	Illumina [463793]	N
615	chr6_apd_hap1	4052438	4052439	rs62398467	34011352	Schwarm C	2021-05-19	Orphanet J Rare Dis	Identification of two novel bullous pemphigoid- associated alleles, HLA-DQA1*05:05 and -DRB1*07:01, in Germans.	Bullous pemphigoid	438 German cases, 417 German controls	NA	6p21.32	HLA-DQB2, HLA-DOB	rs62398467-?	NR	7E-6		0.520158	[0.29-0.75] unit increase	Affymetrix [up to 386296] (imputed)	N
615	chr6_apd_hap1	4053488	4053489	rs9276731	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DOB	rs9276731-T	NR	1E-15		0.0382096	[0.029-0.048] unit decrease	Affymetrix [323858] (imputed)	N
615	chr6_apd_hap1	4053488	4053489	rs9276731	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	HLA-DOB	rs9276731-T	NR	3E-14		0.0364203	[0.027-0.046] unit decrease	Affymetrix [127266] (imputed)	N
615	chr6_apd_hap1	4053488	4053489	rs9276731	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p21.32	HLA-DOB	rs9276731-T	NR	1E-8		0.0269325	[0.018-0.036] unit decrease	Affymetrix [323858] (imputed)	N
615	chr6_apd_hap1	4057296	4057297	rs2621363	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6p21.32	NR	rs2621363-T	0.7091	8E-13		1.0481081	[1.04-1.06]	Affymetrix [15688218] (imputed)	N
615	chr6_apd_hap1	4057296	4057297	rs2621363	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	6p21.32	NR	rs2621363-?	NR	7E-31	(conditional)			Affymetrix [15688218] (imputed)	N
615	chr6_apd_hap1	4058387	4058388	rs151165576	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Treatment or medication use - insulin product (UKB data field 20003_1140883066)	4,469 European ancestry cases, 451,807 European ancestry controls	NA	6p21.32		rs151165576-A	0.003916	2E-15		1.58	[1.19-1.97] unit increase	NR [11842647] (imputed)	N
615	chr6_apd_hap1	4059249	4059250	rs2621355	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.32	Intergenic	rs2621355-G	NR	5E-8		0.0202164	[0.013-0.028] unit increase	Illumina [13520550] (imputed)	N
615	chr6_apd_hap1	4060763	4060764	rs9276757	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.32		rs9276757-A	0.772	8E-30				Affymetrix [10369434] (imputed)	N
616	chr6_apd_hap1	4065139	4065140	rs1054684	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DOB	rs1054684-C	NR	2E-10		0.0303692	[0.021-0.04] unit increase	Affymetrix [323123] (imputed)	N
616	chr6_apd_hap1	4065139	4065140	rs1054684	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.32	TAP2, HLA-DOB	rs1054684-C	0.115598	1E-11		0.03328803	[0.024-0.043] unit increase	Affymetrix [93095623] (imputed)	N
616	chr6_apd_hap1	4065139	4065140	rs1054684	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	6p21.32	NR	rs1054684-C	0.114999	1E-8		0.0591419	[0.038-0.08] unit increase	Affymetrix [17914406] (imputed)	N
616	chr6_apd_hap1	4066140	4066143	rs144227975	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs144227975-CTTT	0.665	4E-15	(conditional)	0.864	[0.83-0.9]	Illumina [11270530] (imputed)	N
616	chr6_apd_hap1	4066649	4066650	rs9276796	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6p21.32	NR	rs9276796-G	0.3953	1E-20		1.058	[1.046-1.07]	Affymetrix [15688218] (imputed)	N
616	chr6_apd_hap1	4066884	4066885	rs1812006	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.32	Intergenic	rs1812006-G	NR	1E-7	(women)	0.0361932	[0.023-0.05] unit decrease	Illumina [13520550] (imputed)	N
616	chr6_apd_hap1	4067886	4067887	rs11244	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p21.32	HLA-DOB	rs11244-A	0.43	4E-11				Illumina [118177]	N
616	chr6_apd_hap1	4068274	4068275	rs2071479	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	6p21.32	HLA-DOB	rs2071479-T	0.0273617407137154	7E-11		0.1473	[0.1-0.19] unit increase	NR [5035015] (imputed)	N
616	chr6_apd_hap1	4068938	4068939	rs2856997	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DOB, TAP2	rs2856997-A	NR	9E-9		0.0165451	[0.011-0.022] unit decrease	Affymetrix [321016] (imputed)	N
616	chr6_apd_hap1	4069744	4069745	rs2071474	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Strep throat	52,487 European ancestry cases, 22,017 European ancestry controls	NA	6p21.32	NR	rs2071474-?	NR	6E-6		0.027	[0.015-0.039] unit increase	Illumina [at least 560000] (imputed)	N
616	chr6_apd_hap1	4069767	4069768	rs2071473	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.32		rs2071473-C	0.671	2E-23				Affymetrix [10369434] (imputed)	N
616	chr6_apd_hap1	4069767	4069768	rs2071473	33106546	Johnson TA	2020-10-26	J Hum Genet	Association of an IGHV3-66 gene variant with Kawasaki disease.	Kawasaki disease	1,276 East Asian ancestry cases, 5,086 East Asian ancestry controls	2,152 East Asian ancestry cases, 2,751 East Asian ancestry controls	6p21.32	HLA-DOB	rs2071473-T	NR	7E-13		1.26	[1.18-1.34]	Affymetrix, Illumina [6265045] (imputed)	N
616	chr6_apd_hap1	4070248	4070249	rs7383287	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in ever smokers	23,223 European ancestry cases,  16,964 European ancestry controls	NA	6p21.32	HLA-DOB	rs7383287-G	0.224903192	1E-10		1.1205634	[1.082275651-1.160205575]	Illumina [10439017] (imputed)	N
616	chr6_apd_hap1	4070248	4070249	rs7383287	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	6p21.32	NR	rs7383287-A	NR	1E-7		1.07	[NR]	Illumina [7158791] (imputed)	N
616	chr6_apd_hap1	4070567	4070568	rs1383258	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p21.32	HLA-DOB	rs1383258-A	0.04	2E-10	(EA)	3.68	[2.40-5.64]	Illumina [up to 547389]	N
616	chr6_apd_hap1	4071945	4071946	rs2071469	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Chronic lymphocytic leukemia	764 White British ancestry cases, 272,079 White British ancestry controls	NA	6p21.32		rs2071469-?	NR	7E-6		0.775782	[0.67-0.89]	NR [663083]	N
616	chr6_apd_hap1	4074079	4074080	rs3763354	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	6p21.32	Intergenic	rs3763354-G	NR	4E-12		0.0433868	[0.031-0.056] unit decrease	Illumina [13520550] (imputed)	N
616	chr6_apd_hap1	4074198	4074199	rs1894407	24586183	Medici M	2014-02-27	PLoS Genet	Identification of novel genetic Loci associated with thyroid peroxidase antibodies and clinical thyroid disease.	Thyroid peroxidase antibody positivity	1,769 European ancestry cases, 16,528 European ancestry controls	922 European ancestry cases, 8,068 European ancestry controls	6p21.32	NR	rs1894407-C		1E-7		1.17	[1.11-1.24]	Affymetrix, Illumina [up to 3437411] (imputed)	N
616	chr6_apd_hap1	4074337	4074338	rs9784858	26272072	Jiang X	2015-08-13	Rheumatology (Oxford)	An Immunochip-based interaction study of contrasting interaction effects with smoking in ACPA-positive versus ACPA-negative rheumatoid arthritis.	ACPA-positive rheumatoid arthritis (smoking interaction)	340 European ancestry never-smoker cases, 493 European ancestry ever-smoker cases, 746 European ancestry never-smoker controls, 994 European ancestry ever-smoker controls	187 European ancestry never-smoker cases, 421 European ancestry ever-smoker cases, 461 European ancestry never-smoker controls, 447 European ancestry ever-smoker controls	6p21.32	NR	rs9784858-?	NR	9E-12	(adjusted for HLA shared epitope)	1.4084507	[1.09-1.96]	Illumina [133648] (imputed)	N
616	chr6_apd_hap1	4075864	4075865	rs2621322	30552173	Aterido A	2018-12-14	Ann Rheum Dis	Genetic variation at the glycosaminoglycan metabolism pathway contributes to the risk of psoriatic arthritis but not psoriasis.	Psoriatic arthritis	744 Spanish ancestry cases, 1,454 Spanish ancestry controls	1,430 cases, 1,417 controls	6p21.32	NR	rs2621322-?	NR	2E-8		5.6	[NR] z-score decrease	Illumina [1387382] (imputed)	N
616	chr6_apd_hap1	4076552	4076553	rs151027268	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.32	NR	rs151027268-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
616	chr6_apd_hap1	4080694	4080695	rs13501	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	TAP2	rs13501-A	NR	3E-9		0.0199818	[0.013-0.027] unit decrease	Affymetrix [323123] (imputed)	N
616	chr6_apd_hap1	4082203	4082204	rs10484565	26272072	Jiang X	2015-08-13	Rheumatology (Oxford)	An Immunochip-based interaction study of contrasting interaction effects with smoking in ACPA-positive versus ACPA-negative rheumatoid arthritis.	ACPA-positive rheumatoid arthritis (smoking interaction)	340 European ancestry never-smoker cases, 493 European ancestry ever-smoker cases, 746 European ancestry never-smoker controls, 994 European ancestry ever-smoker controls	187 European ancestry never-smoker cases, 421 European ancestry ever-smoker cases, 461 European ancestry never-smoker controls, 447 European ancestry ever-smoker controls	6p21.32	NR	rs10484565-?	NR	7E-10	(adjusted for HLA shared epitope)	1.4285715	[1.09-2.13]	Illumina [133648] (imputed)	N
616	chr6_apd_hap1	4083220	4083221	rs241453	32492067	Ruffieux H	2020-06-03	PLoS Comput Biol	A fully joint Bayesian quantitative trait locus mapping of human protein abundance in plasma.	Protein quantitative trait loci	376 European ancestry individuals	400 European ancestry individuals	6p21.32	NR	rs241453-?	NR	2E-6	(C4a)			Illumina [~ 4000000] (imputed)	N
616	chr6_apd_hap1	4084119	4084120	rs241443	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	6p21.32	TAP2	rs241443-G	0.294917	2E-19		0.022992264	[0.018-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
616	chr6_apd_hap1	4084777	4084778	rs2228391	26151496	Chen PL	2015-07-07	Nat Commun	Genetic determinants of antithyroid drug-induced agranulocytosis by human leukocyte antigen genotyping and genome-wide association study.	Thionamide-induced agranulocytosis in Graves' disease	21 East Asian ancestry cases with agranulocytosis, 662 East Asian ancestry cases without agranulocytosis	21 East Asian ancestry cases with agranulocytosis, 546 East Asian ancestry cases without agranulocytosis	6p21.32	HLA	rs2228391-C	0.108	4E-7	(trend)	3.32	[2.02-5.46] (allelic)	Affymetrix [522980]	N
616	chr6_apd_hap1	4084880	4084881	rs241436	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6p21.32		rs241436-?	NR	7E-9		1.06498	[1.04-1.09]	NR [685523]	N
616	chr6_apd_hap1	4084880	4084881	rs241436	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in lean individuals	up to 5,529 European ancestry male individuals, up to 9,753 European ancestry female individuals	NA	6p21.32	TAP2	rs241436-G	0.49	8E-6	(men)	0.089	[0.05-0.128] kg/m2 increase	Affymetrix, Illumina [at least 188473] (imputed)	N
616	chr6_apd_hap1	4086849	4086850	rs60045856	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	6p21.32	NR	rs60045856-G	0.11004825178496	5E-12		0.0101193655	[0.0072-0.013] unit decrease	NR [NR]	N
616	chr6_apd_hap1	4086849	4086850	rs60045856	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p21.32	NR	rs60045856-?	NR	3E-8		0.0829	[0.054-0.112] unit increase	Illumina [at least 560000] (imputed)	N
616	chr6_apd_hap1	4089466	4089467	rs62397688	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	IgA nephropathy	1,180 East Asian ancestry cases, 899 East Asian ancestry controls	NA			rs62397688-A	NR	4E-6		0.58857	[0.34-0.84] unit decrease	Illumina [NR] (imputed)	N
616	chr6_apd_hap1	4089811	4089812	rs4148872	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Diastolic blood pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	6p21.32	HLA	rs4148872-T	0.148057452	2E-7		0.2012	[0.13-0.28] unit increase	Affymetrix [~ 9800000] (imputed)	N
616	chr6_apd_hap1	4090412	4090413	rs28724898	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p21.32	NR	rs28724898-?	NR	4E-13		0.1556	[0.11-0.2] unit decrease	Illumina [at least 560000] (imputed)	N
616	chr6_apd_hap1	4090844	4090845	rs241429	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	TAP2	rs241429-A	NR	3E-8		0.0169285	[0.011-0.023] unit increase	Affymetrix [323123] (imputed)	N
616	chr6_apd_hap1	4091074	4091075	rs241428	23028341	Yang X	2012-09-13	PLoS Genet	Genome-wide association study for serum complement C3 and C4 levels in healthy Chinese subjects.	Complement C3 and C4 levels	1,999 Han Chinese ancestry male individuals	1,496 Han Chinese ancestry male individuals	6p21.32	HLA-DQB	rs241428-G	0.08	9E-83	(Serum level of C4)	0.23	[0.21-0.25] g/L increase	Illumina [1940245] (imputed)	N
616	chr6_apd_hap1	4091223	4091224	rs3819715	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (mother's age at death or mother's attained age)	up to 699,000 individuals	NA	6p21.32	NR	rs3819715-C		7E-6				Illumina [458525]	N
616	chr6_apd_hap1	4091303	4091304	rs3819717	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (non-Lofgren's syndrome without extrapulmonary manifestations)	451 Swedish ancestry cases, 2,086 Swedish ancestry controls	NA	6p21.32	TAP2, PSMB9, HLA-DMB, HLA-DPB1	rs3819717-G	0.515	2E-6		1.434	[1.249-1.648]	Illumina [118177]	N
616	chr6_apd_hap1	4091418	4091419	rs241427	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p21.32	TAP2	rs241427-G	0.797	4E-6		0.062	[0.035-0.089] unit decrease	Affymetrix, Illumina [7374092] (imputed)	N
616	chr6_apd_hap1	4091574	4091575	rs3819720	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.32	NR	rs3819720-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
616	chr6_apd_hap1	4091574	4091575	rs3819720	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs3819720-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
616	chr6_apd_hap1	4091574	4091575	rs3819720	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p21.32	NR	rs3819720-?	NR	1E-12		0.1645	[0.12-0.21] unit decrease	Illumina [at least 560000] (imputed)	N
616	chr6_apd_hap1	4091883	4091884	rs1871665	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.32		rs1871665-T	0.55322	1E-12		1.0307605	[1.02-1.04]	Affymetrix, Illumina [9851866] (imputed)	N
616	chr6_apd_hap1	4092053	4092054	rs2239701	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	Composite immunoglobulin trait (IgA/IgG)	14,183 Icelandic ancestry individuals	2,146 Swedish ancestry individuals	6p21.32	TAP2	rs2239701-C	0.368	3E-10		0.08	NR SD units decrease	Illumina [21568490] (imputed)	N
616	chr6_apd_hap1	4092311	4092312	rs2071466	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.32		rs2071466-C	0.704	1E-10				Affymetrix [10369434] (imputed)	N
616	chr6_apd_hap1	4092311	4092312	rs2071466	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p21.32	TAP2	rs2071466-T		1E-24		0.024	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
616	chr6_apd_hap1	4093392	4093393	rs4148870	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p21.32	TAP2	rs4148870-C	0.402	2E-6		0.053	[0.031-0.075] unit increase	Affymetrix, Illumina [7374092] (imputed)	N
616	chr6_apd_hap1	4093554	4093555	rs74365910	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Ulcerative colitis (PheCode 555.2)	2,569 European ancestry cases, 453,779 European ancestry controls	NA	6p21.32		rs74365910-A	0.009189	9E-10		0.97	[0.66-1.28] unit increase	NR [11842647] (imputed)	N
616	chr6_apd_hap1	4093554	4093555	rs74365910	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Treatment or medication use - levothyroxine sodium (UKB data field 20003_1141191044)	18,688 European ancestry cases, 437,588 European ancestry controls	NA	6p21.32		rs74365910-A	0.009068	2E-15		0.46	[0.35-0.57] unit increase	NR [11842647] (imputed)	N
616	chr6_apd_hap1	4094493	4094494	rs114595701	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	6p21.32	NR	rs114595701-T	0.0925422107617213	2E-9		0.012502657	[0.0084-0.0166] unit decrease	NR [NR]	N
616	chr6_apd_hap1	4094493	4094494	rs114595701	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	6p21.32	NR	rs114595701-T	0.0925422107617213	6E-9		0.013367118	[0.0089-0.0179] unit decrease	NR [NR]	N
616	chr6_apd_hap1	4094493	4094494	rs114595701	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	6p21.32	NR	rs114595701-T	0.0925422107617213	2E-9		0.010604257	[0.0071-0.0141] unit decrease	NR [NR]	N
616	chr6_apd_hap1	4095302	4095303	rs45506201	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	6p21.32	NR	rs45506201-A	0.0926176111889165	4E-9		0.015973978	[0.011-0.021] unit decrease	NR [NR]	N
616	chr6_apd_hap1	4096851	4096852	rs9357155	21399633	Gharavi AG	2011-03-13	Nat Genet	Genome-wide association study identifies susceptibility loci for IgA nephropathy.	Nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls	712 Han Chinese ancestry cases, 748 Han Chinese ancestry controls, 1,238 European ancestry cases, 1,172 European ancestry controls	6p21.32	TAP2, TAP1, PSMB8, PSMB9	rs9357155-?	0.87 (EA)	2E-12		1.41	[NR]	Illumina [498322]	N
616	chr6_apd_hap1	4098632	4098633	rs2071543	32912934	Li M	2020-09-10	J Am Soc Nephrol	Genome-Wide Meta-Analysis Identifies Three Novel Susceptibility Loci and Reveals Ethnic Heterogeneity of Genetic Susceptibility for IgA Nephropathy.	IgA nephropathy	2,628 Chinese ancestry cases, 11,563 Chinese ancestry controls	6,879 Han Chinese ancestry cases, 9,019 Han Chinese ancestry controls, 1,039 Italian ancestry cases, 1,289 Italian ancestry controls	6p21.32	PSMB8	rs2071543-G	0.8187836227622588	1E-6	(East Asian)	1.2505606	[1.14305470436016-1.36817776509077]	NR [3611808] (imputed)	N
616	chr6_apd_hap1	4098632	4098633	rs2071543	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	6p21.32	PSMB9, TAP1, TAP2, PSMB8	rs2071543-G	0.80	2E-9	(East Asian)	1.41	[NR]	Illumina [> 1000000] (imputed)	N
616	chr6_apd_hap1	4099531	4099532	rs2071463	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	6p21.32		rs2071463-?	NR	5E-8				Affymetrix [NR] (imputed)	N
616	chr6_apd_hap1	4105031	4105032	rs113206908	32771030	Tangtanatakul P	2020-08-08	Arthritis Res Ther	Meta-analysis of genome-wide association study identifies FBN2 as a novel locus associated with systemic lupus erythematosus in Thai population.	Systemic lupus erythematosus	487 Thai cases, 1,606 Thai controls	405 Thai cases, 1,590 Thai controls	6p21.32	PSMB9	rs113206908-G	0.21	4E-7		1.4327	[NR]	Illumina [421909] (imputed)	N
616	chr6_apd_hap1	4105679	4105680	rs2071538	32534018	Liu X	2020-06-10	Brain Behav Immun	Genetic factors underlying the bidirectional relationship between autoimmune and mental disorders - findings from a Danish population-based study.	Autoimmune traits	1,383 Danish ancestry cases, 62,656 Danish ancestry controls	NA	6p21.32	NR	rs2071538-A	0.24	8E-10		0.74	[0.67-0.82]	NR [7721839] (imputed)	N
616	chr6_apd_hap1	4108450	4108451	rs2071536	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	PSMB9, TAP1	rs2071536-T	NR	5E-8		0.0260034	[0.017-0.035] unit decrease	Affymetrix [323123] (imputed)	N
616	chr6_apd_hap1	4108450	4108451	rs2071536	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.32		rs2071536-T	0.111873	8E-10		1.0421276	[1.03-1.05]	Affymetrix, Illumina [9851866] (imputed)	N
616	chr6_apd_hap1	4109247	4109248	rs17220241	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.32	HLA-Z, TAP2, PSMB9, PSMB8-AS1, XXbac-BPG246D15.9, TAP1, PSMB8	rs17220241-T	0.02156469	1E-21	(EA, Alpha-2-macroglobulin receptor-associated protein)	1.387	[1.11-1.66] unit increase	Affymetrix [509946]	N
616	chr6_apd_hap1	4117013	4117014	rs7767288	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	6p21.32	PSMB9	rs7767288-A	0.4112	1E-11		0.02464776	[0.018-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
616	chr6_apd_hap1	4119778	4119779	rs1055559	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	6p21.32	NR	rs1055559-?	NR	9E-7		0.079	[0.047-0.111] unit increase	Illumina [at least 560000] (imputed)	N
616	chr6_apd_hap1	4119778	4119779	rs1055559	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	6p21.32	Intergenic	rs1055559-T	NR	4E-9		0.039613	[0.026-0.053] unit decrease	Illumina [13520550] (imputed)	N
616	chr6_apd_hap1	4129972	4129973	rs6903433	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.32		rs6903433-C	0.87	7E-9				Affymetrix [10369434] (imputed)	N
616	chr6_apd_hap1	4139609	4139610	rs2187689	22993228	Williams FM	2012-09-19	Ann Rheum Dis	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NA	6p21.32	PSMB9	rs2187689-C	0.08	3E-8		0.23	[0.15-0.31] unit increase	Affymetrix, Illumina [2552511] (imputed)	N
616	chr6_apd_hap1	4140183	4140183	rs11459466	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	PPP1R2P1	rs11459466-GT	NR	4E-8		0.0204679	[0.013-0.028] unit increase	Affymetrix [323858] (imputed)	N
616	chr6_apd_hap1	4140238	4140239	rs7767732	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.32		rs7767732-C	0.822	3E-21				Affymetrix [10369434] (imputed)	N
616	chr6_apd_hap1	4141654	4141655	rs10046257	22993228	Williams FM	2012-09-19	Ann Rheum Dis	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NA	6p21.32	intergenic	rs10046257-A	0.10	3E-7		0.19	[0.12-0.26] unit increase	Affymetrix, Illumina [2552511] (imputed)	N
616	chr6_apd_hap1	4142674	4142675	rs6457690	22993228	Williams FM	2012-09-19	Ann Rheum Dis	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NA	6p21.32	intergenic	rs6457690-A	0.10	9E-8		0.19	[0.12-0.26] unit increase	Affymetrix, Illumina [2552511] (imputed)	N
616	chr6_apd_hap1	4143343	4143344	rs1029296	22993228	Williams FM	2012-09-19	Ann Rheum Dis	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NA	6p21.32	intergenic	rs1029296-C	0.10	9E-8		0.19	[0.12-0.26] unit increase	Affymetrix, Illumina [2552511] (imputed)	N
616	chr6_apd_hap1	4143444	4143445	rs1029295	22993228	Williams FM	2012-09-19	Ann Rheum Dis	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NA	6p21.32	intergenic	rs1029295-C	0.10	5E-7		0.19	[0.12-0.26] unit increase	Affymetrix, Illumina [2552511] (imputed)	N
616	chr6_apd_hap1	4143896	4143897	rs6936004	22993228	Williams FM	2012-09-19	Ann Rheum Dis	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NA	6p21.32	intergenic	rs6936004-C	0.10	1E-7		0.19	[0.12-0.26] unit increase	Affymetrix, Illumina [2552511] (imputed)	N
616	chr6_apd_hap1	4144379	4144380	rs10214886	22993228	Williams FM	2012-09-19	Ann Rheum Dis	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NA	6p21.32	intergenic	rs10214886-A	0.10	2E-7		0.19	[0.12-0.26] unit increase	Affymetrix, Illumina [2552511] (imputed)	N
616	chr6_apd_hap1	4144496	4144497	rs10214760	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6p21.32	TAP1	rs10214760-?	NR	3E-6	(dimethylglycine)	0.3002602	[0.17-0.43] unit decrease	Affymetrix [at least 2500000] (imputed)	N
616	chr6_apd_hap1	4146672	4146673	rs7744666	22993228	Williams FM	2012-09-19	Ann Rheum Dis	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NA	6p21.32	intergenic	rs7744666-C	0.10	6E-8		0.2	[0.13-0.27] unit increase	Affymetrix, Illumina [2552511] (imputed)	N
616	chr6_apd_hap1	4146708	4146709	rs11969002	22993228	Williams FM	2012-09-19	Ann Rheum Dis	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NA	6p21.32	intergenic	rs11969002-A	0.10	6E-8		0.2	[0.13-0.27] unit increase	Affymetrix, Illumina [2552511] (imputed)	N
616	chr6_apd_hap1	4147712	4147713	rs9469300	22993228	Williams FM	2012-09-19	Ann Rheum Dis	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NA	6p21.32	intergenic	rs9469300-A	0.10	1E-7		0.19	[0.12-0.26] unit increase	Affymetrix, Illumina [2552511] (imputed)	N
616	chr6_apd_hap1	4149567	4149568	rs3749982	22993228	Williams FM	2012-09-19	Ann Rheum Dis	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NA	6p21.32	intergenic	rs3749982-A	0.10	1E-7		0.19	[0.12-0.26] unit increase	Affymetrix, Illumina [2552511] (imputed)	N
616	chr6_apd_hap1	4153055	4153056	rs9276916	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	Systemic lupus erythematosus	1,639 East Asian ancestry cases, 2,410 East Asian ancestry controls	NA			rs9276916-G	NR	2E-8		0.2244	[0.15-0.3] unit increase	Illumina [NR] (imputed)	N
616	chr6_apd_hap1	4157024	4157025	rs3101942	26297903	Fabbri C	2015-08-20	Prog Neuropsychopharmacol Biol Psychiatry	Genetics of long-term treatment outcome in bipolar disorder.	Manic episodes in bipolar disorder	706 European ancestry cases	NA	6p21.32	LOC100294145	rs3101942-?	NR	7E-6		1.733	[1.365-2.201]	Affymetrix [329806] (imputed)	N
616	chr6_apd_hap1	4159885	4159886	rs574560492	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs574560492-?	NR	5E-8				Affymetrix [~ 8270000] (imputed)	N
616	chr6_apd_hap1	4175219	4175220	rs117231810	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.32	Intergenic	rs117231810-?		4E-6		1.06	[1.03-1.08]	Illumina [7645193] (imputed)	N
616	chr6_apd_hap1	4175219	4175220	rs117231810	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.32	Intergenic	rs117231810-?		1E-6		1.69	[1.37-2.09]	Illumina [7645193] (imputed)	N
616	chr6_apd_hap1	4178317	4178318	rs194679	32534018	Liu X	2020-06-10	Brain Behav Immun	Genetic factors underlying the bidirectional relationship between autoimmune and mental disorders - findings from a Danish population-based study.	Autoimmune traits	1,383 Danish ancestry cases, 62,656 Danish ancestry controls	NA	6p21.32	NR	rs194679-T	0.047	1E-9		1.62	[1.4-1.87]	NR [7721839] (imputed)	N
616	chr6_apd_hap1	4187363	4187365	rs57390839	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	6p21.32	PSMB9, HLA-DMB	rs57390839-?	NR	2E-15		0.303437	[0.23-0.38] unit increase	Illumina [at least 950000] (imputed)	N
616	chr6_apd_hap1	4187363	4187365	rs57390839	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p21.32	NR	rs57390839-?	NR	1E-7		0.0931	[0.058-0.128] unit increase	Illumina [at least 560000] (imputed)	N
616	chr6_apd_hap1	4191022	4191023	rs77318243	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DMB	rs77318243-A	NR	3E-11		0.0352508	[0.025-0.046] unit decrease	Affymetrix [323858] (imputed)	N
616	chr6_apd_hap1	4191022	4191023	rs77318243	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	HLA-DMB	rs77318243-A	NR	2E-10		0.0339654	[0.024-0.044] unit decrease	Affymetrix [127266] (imputed)	N
617	chr6_apd_hap1	4194956	4194957	rs147725790	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6p21.32	NR	rs147725790-T	0.98229	2E-12		1.1804981	[1.13-1.23]	Affymetrix [15688218] (imputed)	N
617	chr6_apd_hap1	4198313	4198314	rs116560929	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.32	NR	rs116560929-A	0.01045	3E-9	(FHL1)	0.008308	NR unit increase	Illumina [1671387] (imputed)	N
617	chr6_apd_hap1	4198313	4198314	rs116560929	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.32	NR	rs116560929-A	0.01045	3E-10	(TAGLN)	0.4341	NR unit increase	Illumina [1671387] (imputed)	N
617	chr6_apd_hap1	4198313	4198314	rs116560929	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.32	NR	rs116560929-A	0.01045	2E-8	(CNN2)	0.01914	NR unit increase	Illumina [1671387] (imputed)	N
617	chr6_apd_hap1	4198799	4198800	rs2395296	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs2395296-A	NR	9E-8		1.089	[1.055-1.124]	Affymetrix [7846216] (imputed)	N
617	chr6_apd_hap1	4200231	4200232	rs1480380	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p21.32	HLA-DMB, HLA-DMA	rs1480380-A	0.252	6E-23				Illumina [118177]	N
617	chr6_apd_hap1	4200231	4200232	rs1480380	23453885	Smoller JW	2013-02-27	Lancet	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NA	6p21.32	NR	rs1480380-C	0.908	6E-7	(Modelling analysis)			NR [1252901] (imputed)	N
617	chr6_apd_hap1	4200231	4200232	rs1480380	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.32	intergenic	rs1480380-T	0.0877	4E-39		3.05	[NR]	Illumina [242824]	N
617	chr6_apd_hap1	4201711	4201712	rs73396800	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	6p21.32	NR	rs73396800-G	NR	4E-16		1.1904762	[NR]	Illumina [7158791] (imputed)	N
617	chr6_apd_hap1	4202836	4202837	rs16871226	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	NR	rs16871226-G	0.0244821228239845	2E-6	(IGP67)	0.5182	[0.3-0.73] unit increase	Illumina [~ 2500000] (imputed)	N
617	chr6_apd_hap1	4205444	4205445	rs12153970	26584805	Dorajoo R	2015-11-19	Genes Nutr	A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.	Plasma omega-3 polyunsaturated fatty acid levels (docosahexaenoic acid)	717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls	NA	6p21.32	NR	rs12153970-G	0.9496	4E-6		0.2241	[0.13-0.32] unit increase	Illumina [up to 1980188] (imputed)	N
617	chr6_apd_hap1	4206563	4206564	rs146693865	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.32	NR	rs146693865-G	0.01045	3E-9	(FHL1)	0.008308	NR unit increase	Illumina [1671387] (imputed)	N
617	chr6_apd_hap1	4206563	4206564	rs146693865	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.32	NR	rs146693865-G	0.01045	3E-10	(TAGLN)	0.4341	NR unit increase	Illumina [1671387] (imputed)	N
617	chr6_apd_hap1	4206563	4206564	rs146693865	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.32	NR	rs146693865-G	0.01045	2E-8	(CNN2)	0.01914	NR unit increase	Illumina [1671387] (imputed)	N
617	chr6_apd_hap1	4209447	4209448	rs9378127	30552173	Aterido A	2018-12-14	Ann Rheum Dis	Genetic variation at the glycosaminoglycan metabolism pathway contributes to the risk of psoriatic arthritis but not psoriasis.	Psoriatic arthritis	744 Spanish ancestry cases, 1,454 Spanish ancestry controls	1,430 cases, 1,417 controls	6p21.32	NR	rs9378127-?	NR	4E-7		5.07	[NR] z-score increase	Illumina [1387382] (imputed)	N
617	chr6_apd_hap1	4211572	4211573	rs209474	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.32		rs209474-A	0.623	4E-15				Affymetrix [10369434] (imputed)	N
617	chr6_apd_hap1	4211572	4211573	rs209474	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	6p21.32	HLA-DMA	rs209474-G	0.377123	1E-12		0.016615335	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
617	chr6_apd_hap1	4211572	4211573	rs209474	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	6p21.32	HLA-DMA	rs209474-G	0.377106	6E-15		0.018046945	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
617	chr6_apd_hap1	4211572	4211573	rs209474	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	6p21.32	NR	rs209474-A	0.624456	7E-9		0.0127924	[0.0085-0.0171] unit decrease	NR [NR]	N
617	chr6_apd_hap1	4211572	4211573	rs209474	29121268	Amare AT	2017-11-09	JAMA Psychiatry	Association of Polygenic Score for Schizophrenia and HLA Antigen and Inflammation Genes With Response to Lithium in Bipolar Affective Disorder: A Genome-Wide Association Study.	Bipolar disorder lithium response (continuous) or schizophrenia	2,366 European ancestry lithium treated bipolar disorder cases, 220 Asian ancestry lithium treated bipolar disorder cases, 36,989 schizophrenia cases, controls (see Ripke et al 2014 PMID:25056061)	NA	6p21.32	HLA, DMA	rs209474-A		2E-8				NR [NR] (imputed)	N
617	chr6_apd_hap1	4212687	4212688	rs580962	35215271	Almandil NB	2022-01-27	Pharmaceuticals (Basel)	Integration of Transcriptome and Exome Genotyping Identifies Significant Variants with Autism Spectrum Disorder.	Autism spectrum disorder	70 Arab ancestry cases, 132 Arab ancestry controls	NA	6p21.32	NA	rs580962-G	0.5852	6E-6		0.3383	[0.2105-0.5436]	Illumina [243345]	N
617	chr6_apd_hap1	4215305	4215306	rs209476	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.32		rs209476-G	0.683	9E-16				Affymetrix [10369434] (imputed)	N
617	chr6_apd_hap1	4215979	4215980	rs9276931	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	6p21.32	HLA-DMA	rs9276931-A	0.8852	5E-23		0.0292	[0.023-0.035] unit decrease	Affymetrix [18391927] (imputed)	N
617	chr6_apd_hap1	4275699	4275700	rs9296068	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	6p21.32	HLA-DOA	rs9296068-T	0.65	1E-8		1.05	[1.03-1.07]	Illumina [20370935] (imputed)	N
617	chr6_apd_hap1	4276526	4276527	rs56042736	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	133,321 East Asian ancestry individuals	NA	6p21.32		rs56042736-G	0.049558	3E-17		0.0728205	[0.056-0.09] unit decrease	Illumina [13477433] (imputed)	N
617	chr6_apd_hap1	4292455	4292456	rs150480104	32141793	Garman L	2020-03-06	Ocul Immunol Inflamm	Genome-Wide Association Study of Ocular Sarcoidosis Confirms HLA Associations and Implicates Barrier Function and Autoimmunity in African Americans.	Ocular sarcoidosis	260 African American cases, 1,551 African American controls	NA	6p21.32	NR	rs150480104-A	NR	8E-6		3.855	[2.13-6.98]	Illumina [13976150] (imputed)	N
617	chr6_apd_hap1	4296344	4296345	rs78331658	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Measles	38,219 European ancestry cases, 47,279 European ancestry controls	NA	6p21.32	NR	rs78331658-?	NR	1E-7		1.7845	[1.12-2.45] unit increase	Illumina [at least 560000] (imputed)	N
617	chr6_apd_hap1	4305770	4305771	rs9296069	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.32		rs9296069-C	0.749	5E-33				Affymetrix [10369434] (imputed)	N
617	chr6_apd_hap1	4307165	4307166	rs3130582	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p21.32	HLA-DPA1	rs3130582-T	0.202102	3E-8	(-24 ms)	0.0369729	[0.023-0.051] unit increase	Affymetrix [10000000] (imputed)	N
617	chr6_apd_hap1	4309963	4309964	rs9277176	29534301	Nishida N	2018-03-13	Hepatology	Key HLA-DRB1-DQB1 haplotypes and role of the BTNL2 gene for response to a hepatitis B vaccine.	Response to hepatitis B vaccine	107 Japanese ancestry low responder individuals, 351 Japanese ancestry intermediate responder individuals, 735 Japanese ancestry high responder individuals	NA	6p21.32	HLA-DPA1	rs9277176-?		1E-7		0.219	unit decrease	Affymetrix [427664]	N
617	chr6_apd_hap1	4312768	4312769	rs6457709	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6p21.32		rs6457709-?	NR	2E-6		0.94528	[0.92-0.97]	NR [685523]	N
617	chr6_apd_hap1	4312768	4312769	rs6457709	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Hepatitis B	1,425 European ancestry cases, 218,180 European ancestry controls	NA	6p21.32	NR	rs6457709-?	NR	8E-6		0.1819	[0.1-0.26] unit increase	Illumina [at least 560000] (imputed)	N
617	chr6_apd_hap1	4312925	4312926	rs422544	32771030	Tangtanatakul P	2020-08-08	Arthritis Res Ther	Meta-analysis of genome-wide association study identifies FBN2 as a novel locus associated with systemic lupus erythematosus in Thai population.	Systemic lupus erythematosus	487 Thai cases, 1,606 Thai controls	405 Thai cases, 1,590 Thai controls	6p21.32	HLA-DOA, HLA-DPA1	rs422544-C	0.15	5E-8		0.6232	[NR]	Illumina [421909] (imputed)	N
617	chr6_apd_hap1	4315454	4315455	rs9277332	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Keratinocyte cancer (MTAG)	at least 18,538 European ancestry cases, at least 340,302 European ancestry controls	NA	6p21.32	HLA-DPA1	rs9277332-G	0.744531	2E-9		1.06	[1.04-1.08]	Affymetrix [7600000] (imputed)	N
617	chr6_apd_hap1	4315533	4315534	rs588997	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	6p21.32	NR	rs588997-A	NR	4E-6	(female)	0.1185	[0.068-0.169] unit decrease	Illumina [11133794] (imputed)	N
617	chr6_apd_hap1	4316254	4316255	rs6457710	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	6p21.32	HLA-DPA1	rs6457710-G	0.268971	2E-11		0.017609773	[0.012-0.023] unit increase	Affymetrix [93095623] (imputed)	N
617	chr6_apd_hap1	4318430	4318431	rs35449774	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.32	NR	rs35449774-?	NR	3E-11				Affymetrix [~ 8270000] (imputed)	N
617	chr6_apd_hap1	4318430	4318431	rs35449774	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs35449774-?	NR	2E-16				Affymetrix [~ 8270000] (imputed)	N
617	chr6_apd_hap1	4318430	4318431	rs35449774	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	6p21.32	HLA-DPA1, HLA-DPB1, HLA-DPB2	rs35449774-T	0.142188	7E-11		1.0714098	[1.05-1.09]	Affymetrix [8274727] (imputed)	N
617	chr6_apd_hap1	4319683	4319684	rs1042901	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	6p21.32	HLA-DPA1	rs1042901-C	0.119144	1E-14		0.029356208	[0.022-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
617	chr6_apd_hap1	4319840	4319841	rs3077	33736632	Zeng Z	2021-03-18	BMC Med Genomics	Genome-wide association study identifies new loci associated with risk of HBV infection and disease progression.	Persistent hepatitis B virus infection	587 Chinese ancestry persistent cases, 275 Chinese ancestry clearance controls	NA	6p21.32	HLA-DPA1	rs3077-A	0.4145	7E-9		0.5007	NR	Affymetrix [607153]	N
617	chr6_apd_hap1	4319840	4319841	rs3077	25802187	Jiang DK	2015-04-28	Hepatology	Genetic variants in five novel loci including CFB and CD40 predispose to chronic hepatitis B.	Chronic hepatitis B infection	2,514 Chinese ancestry cases, 1,130 Chinese ancestry controls	6,600 Chinese ancestry cases, 8,127 Chinese ancestry controls	6p21.32	HLA-DPA1	rs3077-A	0.66	1E-53		1.45	[1.39-1.52]	Illumina [3680900] (imputed)	N
617	chr6_apd_hap1	4319840	4319841	rs3077	23760081	Kim YJ	2013-06-10	Hum Mol Genet	A genome-wide association study identified new variants associated with the risk of chronic hepatitis B.	Chronic hepatitis B infection	400 Korean ancestry cases, 1,000 Korean ancestry controls	971 Korean ancestry cases, 1,938 Korean ancestry controls	6p21.32	HLA-DP	rs3077-?	NR	5E-39		1.89	[1.69-2.08]	Illumina [719265]	N
617	chr6_apd_hap1	4319840	4319841	rs3077	22737229	Nishida N	2012-06-21	PLoS One	Genome-wide association study confirming association of HLA-DP with protection against chronic hepatitis B and viral clearance in Japanese and Korean.	Hepatitis B (viral clearance)	181 East Asian ancestry HBV carriers, 184 East Asian ancestry controls, 185 East Asian ancestry spontaneously HBV-resolved individuals	Up to 8,045 East Asian ancestry HBV carriers, up to 9,003 East Asian ancestry controls, up to 3,995 East Asian ancestry spontaneously HBV-resolved individuals	6p21.32	HLA-DPA1	rs3077-C	0.60	4E-45	(Protective effects against CHB)	1.82	[1.67-1.96]	Affymetrix [597789]	N
617	chr6_apd_hap1	4319840	4319841	rs3077	22737229	Nishida N	2012-06-21	PLoS One	Genome-wide association study confirming association of HLA-DP with protection against chronic hepatitis B and viral clearance in Japanese and Korean.	Hepatitis B (viral clearance)	181 East Asian ancestry HBV carriers, 184 East Asian ancestry controls, 185 East Asian ancestry spontaneously HBV-resolved individuals	Up to 8,045 East Asian ancestry HBV carriers, up to 9,003 East Asian ancestry controls, up to 3,995 East Asian ancestry spontaneously HBV-resolved individuals	6p21.32	HLA-DPA1	rs3077-C	0.60	1E-9	(Clearance of HBV)	1.67	[1.43-2.0]	Affymetrix [597789]	N
617	chr6_apd_hap1	4319840	4319841	rs3077	21750111	Mbarek H	2011-07-12	Hum Mol Genet	A genome-wide association study of chronic hepatitis B identified novel risk locus in a Japanese population.	Hepatitis B	458 Japanese ancestry cases, 2,056 Japanese ancestry controls	2,209 Japanese ancestry cases, 4,440 Japanese ancestry controls	6p21.32	HLA-DPA1	rs3077-G	0.60	2E-61		1.87	[1.73-2.01]	Illumina [423627]	N
617	chr6_apd_hap1	4320238	4320239	rs79341334	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	6p21.32	NR	rs79341334-?	NR	4E-9	(MIC-A)	1.11932	[0.75-1.49] unit increase	Illumina [11901634] (imputed)	N
617	chr6_apd_hap1	4320528	4320529	rs73739621	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (multivariate analysis)	477,968 European ancestry individuals	NA	6p21.32	HLA, DPA1	rs73739621-C	0.096	2E-10		0.05	[0.034-0.066] unit decrease	NR [NR] (imputed)	N
617	chr6_apd_hap1	4320528	4320529	rs73739621	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (age of onset)	117,130 European ancestry individuals	NA	6p21.32	HLA-DPA1	rs73739621-C	0.096	4E-11		0.051	[0.035-0.067] unit decrease	NR [7647814] (imputed)	N
617	chr6_apd_hap1	4320632	4320633	rs2301227	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	6p21.32	NR	rs2301227-A	NR	5E-6	(female)	0.1072	[0.061-0.153] unit decrease	Illumina [11133794] (imputed)	N
617	chr6_apd_hap1	4320642	4320643	rs111789468	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	6p21.32	HLA-DPA1	rs111789468-?	NR	2E-13		1.092	[1.07-1.12]	Affymetrix [9000000] (imputed)	N
617	chr6_apd_hap1	4320642	4320643	rs111789468	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	6p21.32	HLA-DPA1	rs111789468-T	NR	4E-6		1.082	[1.05-1.12]	Affymetrix [9000000] (imputed)	N
617	chr6_apd_hap1	4321395	4321396	rs34596699	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	Systemic lupus erythematosus	1,639 East Asian ancestry cases, 2,410 East Asian ancestry controls	NA			rs34596699-T	NR	2E-8		0.2177	[0.14-0.29] unit increase	Illumina [NR] (imputed)	N
617	chr6_apd_hap1	4322133	4322134	rs74292032	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6p21.32	HLA-DPA1	rs74292032-G	0.014974	1E-15		0.07435001	[0.056-0.093] unit decrease	Affymetrix [93095623] (imputed)	N
618	chr6_apd_hap1	4326443	4326444	rs9277341	28029757	Merkel PA	2016-12-28	Arthritis Rheumatol	Identification of Functional and Expression Polymorphisms Associated With Risk for Antineutrophil Cytoplasmic Autoantibody-Associated Vasculitis.	Antineutrophil cytoplasmic antibody-associated vasculitis	1,015 European ancestry granulomatosis with polyangiitis cases, 206 European ancestry microscopic polyangiitis cases, 3,258 European ancestry controls.	541 European ancestry granulomatosis with polyangiitis cases, 30 European ancestry microscopic polyangiitis cases, 1,465 European ancestry controls.	6p21.32	HLA-DPA1	rs9277341-T	0.70	6E-71		2.44	2.21-2.69	Affymetrix [at least 333035] (imputed)	N
618	chr6_apd_hap1	4326622	4326623	rs9277342	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	6p21.32	HLA-DPA1	rs9277342-T	0.21017	8E-10		0.017251292	[0.012-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
618	chr6_apd_hap1	4326916	4326917	rs4345439	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Graves' disease	2,809 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	6p21.32		rs4345439-T	0.47048229	2E-67		0.48648387	[0.43-0.54] unit increase	Illumina [13429311] (imputed)	N
618	chr6_apd_hap1	4327891	4327892	rs9357156	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Graves' disease	1,678 European ancestry cases, 456,942 European ancestry controls, 2,809 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	6p21.32		rs9357156-C	NR	1E-68		0.4396	[0.39-0.49] unit increase	Affymetrix, Illumina [25841587] (imputed)	N
618	chr6_apd_hap1	4328534	4328535	rs2856830	30527956	Rhodes CJ	2018-12-05	Lancet Respir Med	Genetic determinants of risk in pulmonary arterial hypertension: international genome-wide association studies and meta-analysis.	Pulmonary arterial hypertension	2,085 European ancestry cases, 9,659 European ancestry controls	NA	6p21.32	HLA-DPA1, HLA-DPB1	rs2856830-C	0.12	8E-20		1.56	[1.42-1.71]	Illumina [~ 7727590] (imputed)	N
618	chr6_apd_hap1	4329680	4329681	rs987870	21814517	Noguchi E	2011-07-21	PLoS Genet	Genome-wide association study identifies HLA-DP as a susceptibility gene for pediatric asthma in Asian populations.	Asthma	938 Japanese ancestry cases, 2,376 Japanese ancestry controls	1653 East Asian ancestry cases, 1453 East Asian ancestry controls	6p21.32	HLA, DPB1	rs987870-C	0.14	2E-10		1.4	[1.26-1.55]	Illumina [450326]	N
618	chr6_apd_hap1	4329680	4329681	rs987870	21779181	Gorlova O	2011-07-14	PLoS Genet	Identification of novel genetic markers associated with clinical phenotypes of systemic sclerosis through a genome-wide association strategy.	Systemic sclerosis	2,296 European ancestry cases, 5,172 European ancestry controls	3,175 European ancestry cases, 4,210 European ancestry controls	6p21.32	HLA-DPA1, HLA-DPB1	rs987870-?	0.15	2E-20	(ATA positive)	2.09	[1.78-2.45]	Illumina [NR] (imputed)	N
618	chr6_apd_hap1	4330815	4330816	rs115910061	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs115910061-T	0.059	5E-12		0.721	[0.63-0.81]	Illumina [11270530] (imputed)	N
618	chr6_apd_hap1	4331793	4331794	rs6415133	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p21.32	NR	rs6415133-?	NR	6E-16		0.0994	[0.075-0.124] unit decrease	Illumina [at least 560000] (imputed)	N
618	chr6_apd_hap1	4332061	4332062	rs2213309	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	6p21.32	NR	rs2213309-T	0.55	8E-7	(female)	0.1155	[0.07-0.161] unit increase	Illumina [11133794] (imputed)	N
618	chr6_apd_hap1	4332306	4332307	rs2856816	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.32		rs2856816-T	0.908	5E-23				Affymetrix [10369434] (imputed)	N
618	chr6_apd_hap1	4332306	4332307	rs2856816	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	6p21.32	HLA-DPB1, HLA-DPA1	rs2856816-C	0.092	2E-17		0.0523189	[0.04-0.064] unit decrease	Affymetrix [~ 2500000] (imputed)	N
618	chr6_apd_hap1	4332306	4332307	rs2856816	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	6p21.32	HLA-DPB1, HLA-DPA1	rs2856816-C	0.092	7E-15		0.04810228	[0.036-0.06] unit decrease	Affymetrix [~ 2500000] (imputed)	N
618	chr6_apd_hap1	4332504	4332505	rs7750458	27153935	Zhang CE	2016-05-06	J Dermatol	Variation at HLA-DPB1 is associated with dermatomyositis in Chinese population.	Dermatomyositis	127 Han Chinese ancestry case, 1,566 Han Chinese ancestry controls	NA	6p21.32	HLA-DPB1, HLA-DMB	rs7750458-A	0.09	1E-9		2.5	[1.80-3.44]	Illumina [812602]	N
618	chr6_apd_hap1	4332505	4332506	rs56934772	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	6p21.32	HLA-DPB1	rs56934772-T	NR	5E-8		0.259632	[0.17-0.35] unit increase	Illumina [at least 950000] (imputed)	N
618	chr6_apd_hap1	4332772	4332773	rs3135022	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	6p21.32	NR	rs3135022-A	NR	3E-6	(female)	0.1098	[0.064-0.156] unit decrease	Illumina [11133794] (imputed)	N
618	chr6_apd_hap1	4333532	4333533	rs2021408	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.32		rs2021408-T	0.833	1E-17				Affymetrix [10369434] (imputed)	N
618	chr6_apd_hap1	4333532	4333533	rs2021408	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.32		rs2021408-C	0.840557	3E-7		1.0296161	[1.02-1.04]	Affymetrix, Illumina [9851866] (imputed)	N
618	chr6_apd_hap1	4333548	4333549	rs2856821	34450027	Boer CG	2021-08-24	Cell	Deciphering osteoarthritis genetics across 826,690 individuals from 9 populations.	Osteoarthritis of the hip or knee	88,842 European ancestry cases, 397,208 European ancestry controls, 899 Japanese ancestry cases, 3,396 Japanese ancestry controls	NA	6p21.32		rs2856821-T	0.7896	6E-9		1.0471791	[1.031089783-1.063519526]	Affymetrix, Illumina [NR] (imputed)	N
618	chr6_apd_hap1	4333548	4333549	rs2856821	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Osteoarthritis	77,052 European ancestry cases, 378,169 European ancestry controls	NA	6p21.32	NR	rs2856821-T	0.79	1E-9		1.04	[1.03-1.06]	Affymetrix, Illumina [up to 17000000] (imputed)	N
618	chr6_apd_hap1	4333558	4333559	rs3097670	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	6p21.32	HLA-DPA1	rs3097670-G	0.88	8E-12		1.064	[1.05-1.08]	Affymetrix, Illumina [8307659] (imputed)	N
618	chr6_apd_hap1	4333837	4333838	rs1431403	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs1431403-T	0.39	1E-22		0.848	[0.81-0.88]	Illumina [11270530] (imputed)	N
618	chr6_apd_hap1	4334272	4334273	rs3135024	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Aspartate aminotransferase levels	386,570 British ancestry individuals, 10,617 Asian or Asian British individuals, 7,426 Black or Black British individuals, 2,321 Chinese ancestry individuals	NA	6p21.32	HLA-DPB1	rs3135024-?	NR	8E-24		0.0034	[0.0028-0.004] unit increase	Affymetrix [21347608] (imputed)	N
618	chr6_apd_hap1	4334272	4334273	rs3135024	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Alanine aminotransferase levels	387,859 British ancestry individuals, 10,635 Asian or Asian British individuals, 7,468 Black or Black British individuals, 2,338 Chinese ancestry individuals	NA	6p21.32	HLA-DPB1	rs3135024-?	NR	3E-10		0.0034	[0.0024-0.0044] unit increase	Affymetrix [21347608] (imputed)	N
618	chr6_apd_hap1	4334272	4334273	rs3135024	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DPA1, HLA-DPB1, RPL32P1	rs3135024-C	NR	2E-8		0.0184048	[0.012-0.025] unit decrease	Affymetrix [321016] (imputed)	N
618	chr6_apd_hap1	4334418	4334419	rs3097671	34197731	Li Q	2021-06-23	Am J Hum Genet	Whole-exome sequencing reveals common and rare variants in immunologic and neurological genes implicated in achalasia.	Idiopathic achalasia	280 Chinese Han ancestry cases, 1,121 Chinese Han ancestry controls	NA	6p21.32		rs3097671-C	0.102	3E-7		2.29	[1.67-3.15]	Illumina [476650] (imputed)	N
618	chr6_apd_hap1	4334908	4334909	rs3130169	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs3130169-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
618	chr6_apd_hap1	4335266	4335267	rs12722013	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	HLA-DPB1	rs12722013-C	0.049	1E-15	(C-C motif chemokine 21, CCL21.2516.57.3)	0.45	[0.33-0.57] unit increase	Affymetrix [10572788] (imputed)	N
618	chr6_apd_hap1	4335272	4335273	rs1126511	34197731	Li Q	2021-06-23	Am J Hum Genet	Whole-exome sequencing reveals common and rare variants in immunologic and neurological genes implicated in achalasia.	Idiopathic achalasia	100 Chinese Han ancestry cases, 313 Chinese Han ancestry controls	230 Chinese Han ancestry cases, 1,760 Chinese Han ancestry controls	6p21.32		rs1126511-T	0.181	2E-9		1.83		Illumina [192329]	N
618	chr6_apd_hap1	4335344	4335345	rs9277348	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hypothyroidism	1,114 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	6p21.32		rs9277348-C	0.428105722	8E-16		0.3692923	[0.28-0.46] unit increase	Illumina [13429045] (imputed)	N
618	chr6_apd_hap1	4335412	4335413	rs1042133	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	6p21.32	HLA-DPB1	rs1042133-C	0.15836	8E-32		0.036145743	[0.03-0.042] unit increase	Affymetrix [93095623] (imputed)	N
618	chr6_apd_hap1	4335412	4335413	rs1042133	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	6p21.32	HLA-DPB1	rs1042133-C	0.1567	3E-12		0.03465061	[0.025-0.044] unit increase	Affymetrix [~ 2500000] (imputed)	N
618	chr6_apd_hap1	4335467	4335468	rs1042151	32004448	Savage SA	2020-01-30	Am J Hum Genet	Genome-wide Association Study Identifies HLA-DPB1 as a Significant Risk Factor for Severe Aplastic Anemia.	Severe aplastic anemia	359 European ancestry cases, 1,396 European ancestry controls	175 European ancestry cases, 1,059 European ancestry controls	6p21.32	HLA-DPB1	rs1042151-?	NR	2E-13		1.75	[1.50-2.03]	Illumina [688067]	N
618	chr6_apd_hap1	4335467	4335468	rs1042151	23180272	Park BL	2012-11-21	Hum Genet	Genome-wide association study of aspirin-exacerbated respiratory disease in a Korean population.	Aspirin exacerbated respiratory disease in asthmatics	117 Korean ancestry cases, 685 Korean ancestry controls	142 Korean ancestry cases, 996 Korean ancestry controls	6p21.32	HLA-DPB1	rs1042151-G	0.083	5E-7		2.4	[1.68-3.42]	Illumina [430486]	N
618	chr6_apd_hap1	4335495	4335495	rs141530233	28029757	Merkel PA	2016-12-28	Arthritis Rheumatol	Identification of Functional and Expression Polymorphisms Associated With Risk for Antineutrophil Cytoplasmic Autoantibody-Associated Vasculitis.	Antineutrophil cytoplasmic antibody-associated vasculitis	1,015 European ancestry granulomatosis with polyangiitis cases, 206 European ancestry microscopic polyangiitis cases, 3,258 European ancestry controls.	541 European ancestry granulomatosis with polyangiitis cases, 30 European ancestry microscopic polyangiitis cases, 1,465 European ancestry controls.	6p21.32	HLA-DPB1	rs141530233-?	0.7	1E-89		2.99	[2.69-3.33]	Affymetrix [at least 333035] (imputed)	N
618	chr6_apd_hap1	4335500	4335501	rs9277356	31243853	Chung S	2019-06-27	J Viral Hepat	GWAS identifying HLA-DPB1 gene variants associated with responsiveness to hepatitis B virus vaccination in Koreans: Independent association of HLA-DPB1*04:02 possessing rs1042169 G - rs9277355 C - rs9277356 A.	Response to hepatitis B vaccine	1,760 Korean ancestry non-responder adults, 5,107 Korean ancestry responder adults	2,327 Korean ancestry adults, 49 Korean ancestry non-responder infants, 234 Korean ancestry responder infants	6p21.32	HLA-DPB1	rs9277356-A	0.4716	7E-31	(Adults)	1.474164	[1.38-1.574]	Affymetrix [345072]	N
618	chr6_apd_hap1	4335727	4335728	rs7770370	32573827	Huang YH	2020-06-23	Aliment Pharmacol Ther	Large-scale genome-wide association study identifies HLA class II variants associated with chronic HBV infection: a study from Taiwan Biobank.	Chronic hepatitis B infection	1,810 East Asian cases, 9,002 East Asian seropositive controls	648 East Asian cases, 3,190 East Asian seropositive controls	6p21.32	NR	rs7770370-G	0.5739	3E-35		1.6393442	[1.52-1.79]	Affymetrix [583383]	N
618	chr6_apd_hap1	4336080	4336081	rs2856827	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip	15 Asian ancestry cases, 13 European ancestry cases, 15 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	6p21.32	NR	rs2856827-?	NR	4E-6		3.87	[2.88-5.2]	Illumina [539000] (imputed)	N
618	chr6_apd_hap1	4336469	4336470	rs9501251	28425483	Qiu F	2017-04-20	Nat Commun	A genome-wide association study identifies six novel risk loci for primary biliary cholangitis.	Primary biliary cholangitis	1,122 Han Chinese ancestry cases, 4,036 Han Chinese ancestry controls	907 Han Chinese ancestry cases, 2,127 Han Chinese ancestry controls	6p21.32	HLA-DPB1	rs9501251-G	0.044	2E-22		2.01	[1.76-2.32]	Illumina [776516]	N
618	chr6_apd_hap1	4336532	4336533	rs7772134	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.32		rs7772134-G	0.899	5E-45				Affymetrix [10369434] (imputed)	N
618	chr6_apd_hap1	4337085	4337086	rs9277378	27595289	Goyal RK	2016-09-05	Bone Marrow Transplant	Novel HLA-DP region susceptibility loci associated with severe acute GvHD.	Acute graft versus host disease in bone marrow transplantation (recipient effect)	291 European ancestry recipients with acute graft versus host disease, 288 European ancestry recipients without acute graft versus host disease	NA	6p21.32	HLA-DPB1	rs9277378-?		2E-9				Affymetrix [905761]	N
618	chr6_apd_hap1	4337085	4337086	rs9277378	27470079	Li Z	2016-07-25	Lancet Oncol	Genetic risk of extranodal natural killer T-cell lymphoma: a genome-wide association study.	Extranodal natural killer T-cell lymphoma (nasal type)	189 East Asian ancestry cases, 957 East Asian ancestry controls	514 East Asian ancestry cases, 5,822 East Asian ancestry controls	6p21.32	HLA-DPB1	rs9277378-A	0.29	4E-19		1.84	[1.61-2.11]	Illumina [477644] (imputed)	N
618	chr6_apd_hap1	4338703	4338703	rs142975055	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic hepatitis B infection	145 European ancestry cases, 351,740 European ancestry controls, 2,234 East Asian ancestry cases, 169,588 East Asian ancestry controls	NA	6p21.32		rs142975055-GAAATA	NR	1E-44		0.4385	[0.38-0.5] unit increase	Affymetrix, Illumina [20457334] (imputed)	N
618	chr6_apd_hap1	4340142	4340143	rs9277464	29534301	Nishida N	2018-03-13	Hepatology	Key HLA-DRB1-DQB1 haplotypes and role of the BTNL2 gene for response to a hepatitis B vaccine.	Response to hepatitis B vaccine	107 Japanese ancestry low responder individuals, 351 Japanese ancestry intermediate responder individuals, 735 Japanese ancestry high responder individuals	NA	6p21.32	HLA-DPB1	rs9277464-?		7E-11		0.175	unit decrease	Affymetrix [427664]	N
618	chr6_apd_hap1	4341651	4341652	rs9277535	27244555	Li Y	2016-05-31	Nat Commun	Genome-wide association study identifies 8p21.3 associated with persistent hepatitis B virus infection among Chinese.	Persistent hepatitis B virus infection	1,251 Chinese ancestry persistently infected cases, 1,057 Chinese ancestry spontaneously recovered controls	3,905 Chinese ancestry persistently infected cases, 3,356 Chinese ancestry spontaneously recovered controls	6p21.32	HLA-DPB1	rs9277535-A		4E-6		1.45	[1.23-1.69]	Affymetrix, Illumina [up to 4494311] (imputed)	N
618	chr6_apd_hap1	4341651	4341652	rs9277535	25802187	Jiang DK	2015-04-28	Hepatology	Genetic variants in five novel loci including CFB and CD40 predispose to chronic hepatitis B.	Chronic hepatitis B infection	2,514 Chinese ancestry cases, 1,130 Chinese ancestry controls	6,600 Chinese ancestry cases, 8,127 Chinese ancestry controls	6p21.32	HLA-DPB1	rs9277535-A	0.58	1E-70		1.52	[1.45-1.59]	Illumina [3680900] (imputed)	N
618	chr6_apd_hap1	4341651	4341652	rs9277535	24940741	Chang SW	2014-06-18	PLoS One	A genome-wide association study on chronic HBV infection and its clinical progression in male Han-Taiwanese.	Chronic hepatitis B infection	321 Chinese ancestry cases, 304 Chinese ancestry controls	1,302 Chinese ancestry cases, 761 Chinese ancestry controls	6p21.32	HLA-DPB1	rs9277535-G	0.251	5E-14		1.59	[1.41-1.79]	Illumina [456262]	N
618	chr6_apd_hap1	4341651	4341652	rs9277535	23760081	Kim YJ	2013-06-10	Hum Mol Genet	A genome-wide association study identified new variants associated with the risk of chronic hepatitis B.	Chronic hepatitis B infection	400 Korean ancestry cases, 1,000 Korean ancestry controls	971 Korean ancestry cases, 1,938 Korean ancestry controls	6p21.32	HLA-DP	rs9277535-?	NR	4E-40		1.89	[1.72-2.08]	Illumina [719265]	N
618	chr6_apd_hap1	4341651	4341652	rs9277535	22737229	Nishida N	2012-06-21	PLoS One	Genome-wide association study confirming association of HLA-DP with protection against chronic hepatitis B and viral clearance in Japanese and Korean.	Hepatitis B (viral clearance)	181 East Asian ancestry HBV carriers, 184 East Asian ancestry controls, 185 East Asian ancestry spontaneously HBV-resolved individuals	Up to 8,045 East Asian ancestry HBV carriers, up to 9,003 East Asian ancestry controls, up to 3,995 East Asian ancestry spontaneously HBV-resolved individuals	6p21.32	HLA-DPB1	rs9277535-G	0.57	2E-21	(Protective effects against CHB)	1.64	[1.47-1.82]	Affymetrix [597789]	N
618	chr6_apd_hap1	4341651	4341652	rs9277535	22737229	Nishida N	2012-06-21	PLoS One	Genome-wide association study confirming association of HLA-DP with protection against chronic hepatitis B and viral clearance in Japanese and Korean.	Hepatitis B (viral clearance)	181 East Asian ancestry HBV carriers, 184 East Asian ancestry controls, 185 East Asian ancestry spontaneously HBV-resolved individuals	Up to 8,045 East Asian ancestry HBV carriers, up to 9,003 East Asian ancestry controls, up to 3,995 East Asian ancestry spontaneously HBV-resolved individuals	6p21.32	HLA-DPB1	rs9277535-G	0.57	2E-17	(Clearance of HBV)	1.52	[1.37-1.67]	Affymetrix [597789]	N
618	chr6_apd_hap1	4341651	4341652	rs9277535	21764829	Png E	2011-07-15	Hum Mol Genet	A genome-wide association study of hepatitis B vaccine response in an Indonesian population reveals multiple independent risk variants in the HLA region.	Hepatitis B vaccine response	1,683 Indonesian ancestry individuals	1,931 Indonesian ancestry individuals	6p21.32	HLA-DPB1	rs9277535-?	NR	3E-12		1.39	[1.23-1.59]	Illumina [455508]	N
618	chr6_apd_hap1	4341651	4341652	rs9277535	21750111	Mbarek H	2011-07-12	Hum Mol Genet	A genome-wide association study of chronic hepatitis B identified novel risk locus in a Japanese population.	Hepatitis B	458 Japanese ancestry cases, 2,056 Japanese ancestry controls	2,209 Japanese ancestry cases, 4,440 Japanese ancestry controls	6p21.32	HLA-DPB1	rs9277535-G	0.57	3E-54		1.77	[1.65-1.91]	Illumina [423627]	N
618	chr6_apd_hap1	4341651	4341652	rs9277535	19349983	Kamatani Y	2009-04-06	Nat Genet	A genome-wide association study identifies variants in the HLA-DP locus associated with chronic hepatitis B in Asians.	Hepatitis B	179 Japanese ancestry cases, 934 Japanese ancestry controls	1,599 Japanese ancestry cases, 2,821 Japanese ancestry controls, 308 Thai ancestry cases, 546 Thai ancestry controls	6p21.32	HLA-DPB1	rs9277535-G		6E-39		1.75	[1.61-1.92]	Illumina [499544]	N
618	chr6_apd_hap1	4341888	4341889	rs9501255	28077804	Ben-Avraham D	2017-01-10	Aging (Albany NY)	The complex genetics of gait speed: genome-wide meta-analysis approach.	Gait speed in old age	31,478 European ancestry older adults	2,588 European ancestry older adults	6p21.32	HLA-DPB1	rs9501255-T	NR	3E-7		0.0244	[0.015-0.034] m/sec increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
618	chr6_apd_hap1	4342037	4342038	rs9277542	33736632	Zeng Z	2021-03-18	BMC Med Genomics	Genome-wide association study identifies new loci associated with risk of HBV infection and disease progression.	Persistent hepatitis B virus infection	587 Chinese ancestry persistent cases, 275 Chinese ancestry clearance controls	NA	6p21.32	HLA-DPB1	rs9277542-T	0.5347	2E-8		0.5353	NR	Affymetrix [607153]	N
618	chr6_apd_hap1	4342037	4342038	rs9277542	33736632	Zeng Z	2021-03-18	BMC Med Genomics	Genome-wide association study identifies new loci associated with risk of HBV infection and disease progression.	Hepatitis B	460 Chinese ancestry cases, 169 Chinese ancestry controls	NA	6p21.32	HLA-DPB1	rs9277542-?	NR	2E-9				Affymetrix [607153]	N
618	chr6_apd_hap1	4342209	4342210	rs9277549	29534301	Nishida N	2018-03-13	Hepatology	Key HLA-DRB1-DQB1 haplotypes and role of the BTNL2 gene for response to a hepatitis B vaccine.	Response to hepatitis B vaccine	107 Japanese ancestry low responder individuals, 351 Japanese ancestry intermediate responder individuals, 735 Japanese ancestry high responder individuals	NA	6p21.32	HLA-DPB2	rs9277549-?		6E-11		0.175	unit decrease	Affymetrix [427664]	N
618	chr6_apd_hap1	4342291	4342292	rs9277552	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Osteoarthritis of the hip or knee	39,427 European ancestry cases, 378,169 European ancestry controls	NA	6p21.32	NR	rs9277552-C	0.79	2E-10		1.06	[1.04-1.08]	Affymetrix, Illumina [up to 17000000] (imputed)	N
618	chr6_apd_hap1	4342291	4342292	rs9277552	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Knee osteoarthritis	24,955 European ancestry cases, 378,169 European ancestry controls	NA	6p21.32	NR	rs9277552-C	0.79	2E-8		1.07	[1.04-1.09]	Affymetrix, Illumina [up to 17000000] (imputed)	N
618	chr6_apd_hap1	4342328	4342329	rs9277554	28076899	Taylor KE	2017-01-11	Arthritis Rheumatol	Genome-Wide Association Analysis Reveals Genetic Heterogeneity of Sjogren's Syndrome According to Ancestry.	Sjogren's syndrome	460 Asian ancestry cases, 1125 Asian ancestry controls	NA	6p21.32	HLA-DPB1	rs9277554-?		3E-7		1.65	[1.37-2.00]	Illumina [302688]	N
618	chr6_apd_hap1	4342328	4342329	rs9277554	23740775	Xie G	2013-09-01	Arthritis Rheum	Association of granulomatosis with polyangiitis (Wegener's) with HLA-DPB1*04 and SEMA6A gene variants: evidence from genome-wide analysis.	Wegener's granulomatosis	459 European ancestry cases, 1,503 European ancestry controls	291 European ancestry cases, 317 European ancestry controls	6p21.32	HLA-DOA, HSD17B8, RING1, COL11A2, RXRB, HLA-DPB1*04, HLA-DPB1, HLA-DPB2	rs9277554-C	0.708	2E-50		4.17	[3.33-5.00]	Illumina [287802]	N
618	chr6_apd_hap1	4342395	4342396	rs9277555	24586183	Medici M	2014-02-27	PLoS Genet	Identification of novel genetic Loci associated with thyroid peroxidase antibodies and clinical thyroid disease.	Thyroid peroxidase antibody levels	12,353 European ancestry individuals	8,159 European ancestry individuals	6p21.32	NR	rs9277555-G		6E-7		0.0199	[0.010-0.030] unit increase	Affymetrix, Illumina [up to 3437411] (imputed)	N
618	chr6_apd_hap1	4342455	4342458	rs148969528	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p21.32	HLA-DPB1, HLA-DPA2	rs148969528-A	0.178395	3E-15		0.022868847	[0.017-0.029] unit increase	Affymetrix [93095623] (imputed)	N
618	chr6_apd_hap1	4342455	4342458	rs148969528	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	6p21.32	HLA-DPB1, HLA-DPA2	rs148969528-A	0.178377	1E-17		0.024778191	[0.019-0.03] unit increase	Affymetrix [93095623] (imputed)	N
618	chr6_apd_hap1	4342887	4342888	rs3128967	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6p21.32	NR	rs3128967-T	0.90959	2E-12		1.0504202	[1.04-1.06]	Affymetrix [15688218] (imputed)	N
618	chr6_apd_hap1	4343552	4343553	rs9277562	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic hepatitis B infection	2,234 East Asian ancestry cases, 169,588 East Asian ancestry controls	NA	6p21.32		rs9277562-T	0.575524651	5E-45		0.44033504	[0.38-0.5] unit increase	Illumina [13428705] (imputed)	N
618	chr6_apd_hap1	4345664	4345665	rs2179920	27501781	Shiraishi K	2016-08-09	Nat Commun	Association of variations in HLA class II and other loci with susceptibility to EGFR-mutated lung adenocarcinoma.	EGFR mutation-positive lung adenocarcinoma	663 Japanese ancestry cases, 4,367 Japanese ancestry controls	2,510 Japanese ancestry cases, 10,791 Japanese ancestry controls	6p21.32	HLA-DPB1	rs2179920-A	0.165	5E-17		1.36	[1.27-1.47]	Illumina [NR] (imputed)	N
618	chr6_apd_hap1	4346908	4346909	rs2281388	31050781	Zhao SX	2019-05-03	JAMA Netw Open	Assessment of Molecular Subtypes in Thyrotoxic Periodic Paralysis and Graves Disease Among Chinese Han Adults: A Population-Based Genome-Wide Association Study.	Thyrotoxic hypokalemic periodic paralysis and Graves disease	171 Han Chinese ancestry cases, 2,160 Han Chinese ancestry controls	362 Han Chinese ancestry cases, 1,089 Han Chinese ancestry controls	6p21.32	HLA-DPB1, COL11A2	rs2281388-?	0.33	2E-18		1.74	[1.54-1.98]	Illumina [2752055] (imputed)	N
618	chr6_apd_hap1	4346908	4346909	rs2281388	21841780	Chu X	2011-08-14	Nat Genet	A genome-wide association study identifies two new risk loci for Graves' disease.	Graves' disease	1,468 Chinese ancestry cases, 1,490 Chinese ancestry controls	3,994 Chinese ancestry cases, 3,510 Chinese ancestry controls	6p21.32	HLA, DPB1	rs2281388-T	0.32	2E-65		1.64	[1.55-1.74]	Illumina [486049]	N
618	chr6_apd_hap1	4347612	4347613	rs6928954	20639394	Kang TW	2010-07-16	Hum Mol Genet	Genome-wide association of serum bilirubin levels in Korean population.	Bilirubin levels	8,841 Korean ancestry individuals	1,096 Korean ancestry individuals	6p21.32	intergenic	rs6928954-?	0.023	1E-6		0.075	[NR] bilirubin level increase	Affymetrix [1227049] (imputed)	N
618	chr6_apd_hap1	4347660	4347661	rs2295119	32912934	Li M	2020-09-10	J Am Soc Nephrol	Genome-Wide Meta-Analysis Identifies Three Novel Susceptibility Loci and Reveals Ethnic Heterogeneity of Genetic Susceptibility for IgA Nephropathy.	IgA nephropathy	2,628 Chinese ancestry cases, 11,563 Chinese ancestry controls	6,879 Han Chinese ancestry cases, 9,019 Han Chinese ancestry controls, 1,039 Italian ancestry cases, 1,289 Italian ancestry controls	6p21.32	DPA1.DPB2	rs2295119-T	0.22960427086396265	3E-14	(East Asian)	1.3605813	[1.25664462393162-1.47311444258073]	NR [3611808] (imputed)	N
618	chr6_apd_hap1	4347660	4347661	rs2295119	29784950	Sawai H	2018-05-21	Sci Rep	Genome-wide association study identified new susceptible genetic variants in HLA class I region for hepatitis B virus-related hepatocellular carcinoma.	Hepatocellular carcinoma in hepatitis B infection	473 Japanese ancestry chronic hepatitis and hepatocellular carcinoma cases, 516 Japanese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma	153 Japanese ancestry chronic hepatitis and hepatocellular carcinoma cases, 614 Japanese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma, 94 Chinese ancestry chronic hepatitis and hepatocellular carcinoma cases, 187 Chinese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma, 185 Thai ancestry chronic hepatitis and hepatocellular carcinoma cases, 198 Thai ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma	6p21.32	HLA	rs2295119-?	NR	6E-7	(Japanese)	1.59	[1.32-1.89]	Affymetrix [447830]	N
618	chr6_apd_hap1	4347660	4347661	rs2295119	29784950	Sawai H	2018-05-21	Sci Rep	Genome-wide association study identified new susceptible genetic variants in HLA class I region for hepatitis B virus-related hepatocellular carcinoma.	Hepatocellular carcinoma in hepatitis B infection	473 Japanese ancestry chronic hepatitis and hepatocellular carcinoma cases, 516 Japanese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma	153 Japanese ancestry chronic hepatitis and hepatocellular carcinoma cases, 614 Japanese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma, 94 Chinese ancestry chronic hepatitis and hepatocellular carcinoma cases, 187 Chinese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma, 185 Thai ancestry chronic hepatitis and hepatocellular carcinoma cases, 198 Thai ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma	6p21.32	HLA	rs2295119-?	NR	5E-7		1.5873016	[1.32-1.89] Japanese	Affymetrix [447830]	N
618	chr6_apd_hap1	4348019	4348020	rs3130189	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.32		rs3130189-T	0.829	9E-13				Affymetrix [10369434] (imputed)	N
618	chr6_apd_hap1	4356357	4356358	rs3117245	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs3117245-C	NR	8E-9		1.174	[1.112-1.24]	Affymetrix [7846216] (imputed)	N
618	chr6_apd_hap1	4356683	4356684	rs3117242	22808956	Lyons PA	2012-07-19	N Engl J Med	Genetically distinct subsets within ANCA-associated vasculitis.	Antineutrophil cytoplasmic antibody-associated vasculitis	914 European ancestry cases, 5,259 European ancestry controls	1,454 European ancestry cases, 1,666 European ancestry controls	6p21.32	HLA-DP, COL11A2	rs3117242-?	NR	1E-71		3.67	[NR]	Affymetrix [NR]	N
618	chr6_apd_hap1	4357791	4357791	rs559242105	33143745	Andlauer TFM	2020-11-04	BMC Med	Treatment- and population-specific genetic risk factors for anti-drug antibodies against interferon-beta: a GWAS.	Neutralising antibody response to interferon beta therapy in multiple sclerosis (presence of antibodies; IFN?-1b subcutaneous)	up to 2,000 German and Swedish ancestry individuals	up to 757 German and Swedish ancestry individuals	6p21.32		rs559242105-TA	0.18	1E-8	(conditional on rs28366299)	0.85	[-0.56--1.14] unit decrease	Illumina [8550834] (imputed)	N
618	chr6_apd_hap1	4357791	4357791	rs559242105	33143745	Andlauer TFM	2020-11-04	BMC Med	Treatment- and population-specific genetic risk factors for anti-drug antibodies against interferon-beta: a GWAS.	Neutralising antibody response to interferon beta therapy in multiple sclerosis (antibody titre; IFN?-1b subcutaneous)	up to 2,000 German and Swedish ancestry individuals	up to 757 German and Swedish ancestry individuals	6p21.32		rs559242105-TA	0.18	5E-10	(conditional on rs9272775)	0.28	[-0.18--0.38] unit decrease	Illumina [8550834] (imputed)	N
618	chr6_apd_hap1	4358085	4358086	rs3128923	33736632	Zeng Z	2021-03-18	BMC Med Genomics	Genome-wide association study identifies new loci associated with risk of HBV infection and disease progression.	Hepatitis B	460 Chinese ancestry cases, 169 Chinese ancestry controls	NA	6p21.32	HLA-DPA2	rs3128923-?	NR	2E-6				Affymetrix [607153]	N
618	chr6_apd_hap1	4358935	4358936	rs4282438	24097066	Li Y	2013-10-06	Nat Genet	A genome-wide association study in Han Chinese identifies a susceptibility locus for primary Sjogren's syndrome at 7q11.23.	Sjogren's syndrome	542 Han Chinese ancestry cases, 1,050 Han Chinese ancestry controls	1,303 Han Chinese ancestry cases, 2,727 Han Chinese ancestry controls	6p21.32	COL11A2, HLA-DPB1, HLA-DPA1	rs4282438-G	0.3546	9E-25		1.58	[1.45-1.72]	Affymetrix [556134]	N
618	chr6_apd_hap1	4358935	4358936	rs4282438	23817570	Shi Y	2013-06-30	Nat Genet	A genome-wide association study identifies two new cervical cancer susceptibility loci at 4q12 and 17q12.	Cervical cancer	Up to 1,364 Han Chinese ancestry cases, up to 3,028 Han Chinese ancestry controls	4,167 Han Chinese ancestry cases, 7,196 Han Chinese ancestry controls	6p21.32	HLA-DPB2	rs4282438-?	0.56	5E-27	(Stringently Matched)	1.35	[1.27-1.41]	Affymetrix [563339]	N
618	chr6_apd_hap1	4359003	4359004	rs2064479	31044621	Rimpela JM	2019-05-02	Blood Press	Genome-wide association study of white-coat effect in hypertensive patients.	White coat effect (clinic diastolic blood pressure minus ambulatory diastolic blood pressure)	206 Finnish ancestry individuals	NA	6p21.32	HLA-DPB1	rs2064479-A	0.26	5E-6		2.4	[1.42-3.38] unit increase	Illumina [629414]	N
618	chr6_apd_hap1	4362206	4362207	rs910320	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.32	Intergenic	rs910320-?		8E-8		1.05	[1.03-1.07]	Illumina [7645193] (imputed)	N
618	chr6_apd_hap1	4362429	4362430	rs3128930	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p21.32	HLA-DPA1	rs3128930-C	0.683	7E-6		0.053	[0.029-0.077] unit increase	Affymetrix, Illumina [7374092] (imputed)	N
618	chr6_apd_hap1	4362853	4362854	rs872956	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.32	Intergenic	rs872956-?		8E-8		1.58	[1.34-1.86]	Illumina [7645193] (imputed)	N
618	chr6_apd_hap1	4362915	4362918	rs57746686	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cervical cancer	967 East Asian ancestry cases, 60,614 East Asian ancestry controls	NA	6p21.32		rs57746686-G	0.159023897	1E-9		0.38955024	[0.26-0.52] unit increase	Illumina [13381745] (imputed)	N
618	chr6_apd_hap1	4364926	4364927	rs3130218	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cervical cancer	6,563 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs3130218-A	NR	5E-9		1.16171	NR	Affymetrix [7846216] (imputed)	N
618	chr6_apd_hap1	4369029	4369030	rs9277630	34246321	Fukunaga K	2021-07-10	Am J Hum Genet	Genome-wide association study reveals an association between the HLA-DPB1<sup>*</sup>02:01:02 allele and wheat-dependent exercise-induced anaphylaxis.	Wheat-dependent exercise-induced anaphylaxis	77 Japanese ancestry cases, 924 Japanese ancestry controls	91 Japanese ancestry cases, 435 Japanese ancestry controls	6p21.32		rs9277630-A	0.26	1E-11		3.53	[2.45-5.09]	Illumina [3891096] (imputed)	N
618	chr6_apd_hap1	4369070	4369071	rs733208	24722205	Kwak SH	2014-04-17	Hum Mol Genet	A genome-wide association study on thyroid function and anti-thyroid peroxidase antibodies in Koreans.	Thyroid peroxidase antibody positivity	377 Korean ancestry cases, 3,019 Korean ancestry anti-TPO controls	108 Korean ancestry cases, 734 Korean ancestry controls	6p21.32	HLA-DPB2	rs733208-A	0.30	4E-7		1.435	[1.30-1.57]	Affymetrix [1418709] (imputed)	N
618	chr6_apd_hap1	4369274	4369275	rs9277636	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	6p21.32	NR	rs9277636-G	0.153	3E-8		0.0105227	[0.0068-0.0143] unit increase	NR [~ 9732723] (imputed)	N
618	chr6_apd_hap1	4372182	4372183	rs139394070	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	6p21.32		rs139394070-?	NR	5E-8				Affymetrix [NR] (imputed)	N
618	chr6_apd_hap1	4373011	4373012	rs3117035	20031603	Marroni F	2009-08-01	Circ Cardiovasc Genet	A genome-wide association scan of RR and QT interval duration in 3 European genetically isolated populations: the EUROSPAN project.	RR interval (heart rate)	2,325 European ancestry individuals	NA	6p21.32	intergenic	rs3117035-A	0.48	1E-6		0.14	[0.08-0.20] unit decrease	Illumina [~ 318327]	N
618	chr6_apd_hap1	4373210	4373211	rs1883414	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	6p21.32	HLA-DPB2, HLA-DPB1, HLA-DPA1	rs1883414-G	0.68	2E-11		1.22	[NR]	Illumina [> 1000000] (imputed)	N
618	chr6_apd_hap1	4373210	4373211	rs1883414	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	6p21.32	HLA-DPB1, HLA-DPA1, HLA-DPB2	rs1883414-G	0.68	5E-7	(EA)	1.2	[NR]	Illumina [> 1000000] (imputed)	N
618	chr6_apd_hap1	4373210	4373211	rs1883414	21399633	Gharavi AG	2011-03-13	Nat Genet	Genome-wide association study identifies susceptibility loci for IgA nephropathy.	Nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls	712 Han Chinese ancestry cases, 748 Han Chinese ancestry controls, 1,238 European ancestry cases, 1,172 European ancestry controls	6p21.32	HLA-DPA1, HLA-DPB1, HLA-DPB2	rs1883414-?	0.67 (EA)	5E-9		1.28	[NR]	Illumina [498322]	N
618	chr6_apd_hap1	4374845	4374846	rs115311892	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein COL11A2	5,366 Icelandic ancestry individuals	NA	6p21.32		rs115311892-T	0.01149	1E-16		0.748771	[0.57-0.93] unit increase	Illumina [7506463] (imputed)	N
618	chr6_apd_hap1	4376385	4376386	rs3117027	23482656	Chen D	2013-03-12	J Natl Cancer Inst	Genome-wide association study of susceptibility loci for cervical cancer.	Cervical cancer	1,034 European ancestry cases, 3,948 European ancestry controls	1,140 European ancestry cases, 1,058 European ancestry controls	6p21.32	HLA-DPB2	rs3117027-?	NR	1E-7		1.25	[1.15-1.36]	Illumina [632668]	N
618	chr6_apd_hap1	4383466	4383467	rs117232140	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	6p21.32	HLA-DPB2	rs117232140-?	NR	7E-9		0.096564196	[0.064-0.129] unit decrease	Illumina [27896057] (imputed)	N
618	chr6_apd_hap1	4383467	4383468	rs3117006	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma and attention deficit hyperactivity disorder	46,802 European ancestry asthma cases, 19,099 European ancestry attention deficit hyperactivity disorder cases, 381,675 European ancestry controls	NA	6p21.32	HLA-DPB2	rs3117006-?	NR	3E-8				Affymetrix [up to 8274727] (imputed)	N
618	chr6_apd_hap1	4383467	4383468	rs3117006	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma (childhood onset)	9,676 European ancestry cases, 347,481 European ancestry controls	NA	6p21.32	HLA-DPB2	rs3117006-?	NR	2E-6		0.0766984	[0.044-0.109] unit increase	Affymetrix [8274727] (imputed)	N
618	chr6_apd_hap1	4384182	4384183	rs3129270	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs3129270-T	NR	1E-7		1.1494253	[1.09-1.21]	Affymetrix [7846216] (imputed)	N
618	chr6_apd_hap1	4384373	4384374	rs3129269	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	6p21.32	HLA-DPB2, HLA-DPB1, HLA-DPA1	rs3129269-C	NR	5E-7	(East Asian)	1.29	[NR]	Illumina [> 1000000] (imputed)	N
618	chr6_apd_hap1	4384810	4384811	rs3116995	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.32	NR	rs3116995-?	NR	6E-9				Affymetrix [~ 8270000] (imputed)	N
618	chr6_apd_hap1	4385103	4385104	rs6901830	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	6p21.32	HCG24	rs6901830-G	0.847121	1E-19		1.0788485	[1.0613158162383-1.09667081279089]	NR [9572556] (imputed)	N
618	chr6_apd_hap1	4385328	4385329	rs9277768	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hashimoto thyroiditis	537 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	6p21.32		rs9277768-T	0.335380575	4E-10		0.4089919	[0.28-0.54] unit increase	Illumina [13428945] (imputed)	N
618	chr6_apd_hap1	4385355	4385356	rs9277769	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.32		rs9277769-C	0.368	4E-12				Affymetrix [10369434] (imputed)	N
618	chr6_apd_hap1	4385557	4385558	rs3116994	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.32		rs3116994-G	0.461	2E-9				Affymetrix [10369434] (imputed)	N
618	chr6_apd_hap1	4385557	4385558	rs3116994	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs3116994-A	0.548	6E-12	(Collagen alpha-2(XI) chain, COL11A2.11278.4.3)	0.17	[0.13-0.21] unit increase	Affymetrix [10572788] (imputed)	N
618	chr6_apd_hap1	4386296	4386297	rs3116989	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma onset (childhood vs adult)	13,962 European ancestry childhood onset cases, 14,873 European ancestry adult onset cases	31,002 European ancestry childhood onset cases, 16,297 European ancestry adult onset cases	6p21.32	COL11A2, HLA-DPB2	rs3116989-G	0.867	4E-6		1.073	[1.04-1.1]	Affymetrix [9000000] (imputed)	N
618	chr6_apd_hap1	4386296	4386297	rs3116989	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	6p21.32	HLA-DPB2, COL11A2	rs3116989-?	NR	3E-17		1.096	[1.07-1.12]	Affymetrix [9000000] (imputed)	N
618	chr6_apd_hap1	4386296	4386297	rs3116989	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	6p21.32	HLA-DPB2, COL11A2	rs3116989-G	NR	4E-14		1.078	[1.06-1.1]	Affymetrix [9000000] (imputed)	N
620	chr6_apd_hap1	4599246	4599247	rs9277992	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		6p21.32	DAXX	rs9277992-G	0.810445	6E-14		0.0132109	[0.0098-0.0167] unit decrease	Affymetrix [12370749]	N
620	chr6_apd_hap1	4603241	4603242	rs187208364	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	6p21.32		rs187208364-?	NR	5E-8				Affymetrix [NR] (imputed)	N
620	chr6_apd_hap1	4606604	4606605	rs9278004	34197731	Li Q	2021-06-23	Am J Hum Genet	Whole-exome sequencing reveals common and rare variants in immunologic and neurological genes implicated in achalasia.	Idiopathic achalasia	280 Chinese Han ancestry cases, 1,121 Chinese Han ancestry controls	NA	6p21.32		rs9278004-A	0.045	6E-6		2.9	[1.83-4.6]	Illumina [476650] (imputed)	N
620	chr6_apd_hap1	4613491	4613492	rs9278020	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	6p21.32	NR	rs9278020-A	0.1012	4E-8				NR [9056863] (imputed)	N
620	chr6_apd_hap1	4615496	4615497	rs114984535	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	6p21.32	DAXX, KIFC1	rs114984535-T	0.985403356	2E-6		1.2639532	[1.15-1.39]	Illumina [10439017] (imputed)	N
585	chr6_cox_hap2	2226	2227	rs34668037	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6p22.1	GPX6	rs34668037-A	NR	2E-8		0.0282879	[0.019-0.038] unit increase	Affymetrix [321114] (imputed)	N
585	chr6_cox_hap2	2838	2839	rs6456822	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	Epithelial ovarian cancer	16,924 European ancestry cases, 68,502 European ancestry controls	NA	6p22.1	NR	rs6456822-T	0.690887	1E-6		1.0714362	[1.04202715140265-1.10167527662683]	Illumina [11595112] (imputed)	N
585	chr6_cox_hap2	5120	5121	rs13191038	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in HDL	115,082 European ancestry individuals	NA	6p22.1		rs13191038-T	0.886309	5E-8		0.0317288	[0.02-0.043] unit increase	NR [11722792] (imputed)	N
585	chr6_cox_hap2	5120	5121	rs13191038	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p22.1	NR	rs13191038-C	0.1101	4E-12		0.0131	[0.0094-0.0168] unit decrease	NR [7666894] (imputed)	N
585	chr6_cox_hap2	5120	5121	rs13191038	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA	6p22.1	NR	rs13191038-?	NR	5E-6		0.058	[0.033-0.083] unit increase	Illumina [at least 560000] (imputed)	N
585	chr6_cox_hap2	8878	8878	rs71548342	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	6p22.1	NR	rs71548342-GCA	0.1743	3E-12		0.002227	[0.0016-0.0029] unit decrease	Affymetrix [NR] (imputed)	N
585	chr6_cox_hap2	8912	8912	rs34713341	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	6p22.1		rs34713341-GCA	NR	4E-8		0.0191	[0.012-0.026] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
585	chr6_cox_hap2	10303	10304	rs149129224	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p22.1	NR	rs149129224-?	NR	1E-6		0.2331	[0.14-0.33] unit decrease	Illumina [at least 560000] (imputed)	N
585	chr6_cox_hap2	15899	15900	rs4624865	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p22.1	GPX6, GPX5	rs4624865-C	0.02	5E-6	(EA)	3.56	[1.99-6.36]	Illumina [up to 547389]	N
585	chr6_cox_hap2	24753	24754	rs451774	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	6p22.1		rs451774-?	NR	5E-8				Affymetrix [NR] (imputed)	N
585	chr6_cox_hap2	57036	57037	rs139582054	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p22.1	NR	rs139582054-?	NR	1E-8		0.167	[0.11-0.22] unit increase	Illumina [at least 560000] (imputed)	N
585	chr6_cox_hap2	70877	70878	rs146918648	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Depression	at least 5,919 European ancestry cases, at least 130,691 European ancestry controls	634,037 European ancestry cases, 1,308,690 European ancestry controls	6p22.1	SCAND3	rs146918648-G	0.02684	2E-12		0.04114411	[0.028-0.054] unit decrease	NR [9417325] (imputed)	N
585	chr6_cox_hap2	70877	70878	rs146918648	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling miserable	376,097 European ancestry individuals	NA	6p22.1	NR	rs146918648-A	0.042114	2E-8		5.65	z score increase	NR [10847151] (imputed)	N
585	chr6_cox_hap2	79352	79353	rs114416898	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	6p22.1	NR	rs114416898-?	NR	6E-6		0.0076225	[0.0043-0.0109] unit increase	Affymetrix [805426] (imputed)	N
585	chr6_cox_hap2	81450	81451	rs392471	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	SCAND3, RP5-1186N24.3	rs392471-C	NR	2E-12		0.0385326	[0.028-0.049] unit decrease	Affymetrix [321016] (imputed)	N
585	chr6_cox_hap2	83430	83431	rs144478515	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	67,764 individuals	NA	6p22.1	NR	rs144478515-?		7E-9				NR [8377093]	N
585	chr6_cox_hap2	83430	83431	rs144478515	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	65,967 individuals	NA	6p22.1	NR	rs144478515-?		7E-9				NR [8377093]	N
585	chr6_cox_hap2	84451	84452	rs34119086	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p22.1	NR	rs34119086-T	0.093	8E-9	(EA)	0.0679	[0.045-0.091] unit decrease	Illumina [~ 11800000] (imputed)	N
585	chr6_cox_hap2	95209	95210	rs442439	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p22.1	ZBED9	rs442439-A		1E-17		0.02	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
585	chr6_cox_hap2	98347	98348	rs4947336	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphoglycerides levels	115,006 European ancestry individuals	NA	6p22.1		rs4947336-T	0.884789	4E-8		0.0336006	[0.022-0.046] unit increase	NR [11722792] (imputed)	N
585	chr6_cox_hap2	98347	98348	rs4947336	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein A1 levels	115,082 European ancestry individuals	NA	6p22.1		rs4947336-T	0.884785	7E-9		0.0342005	[0.023-0.046] unit increase	NR [11722792] (imputed)	N
585	chr6_cox_hap2	100490	100491	rs34388845	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	6p22.1		rs34388845-G	0.21	9E-16				NR [NR] (imputed)	N
585	chr6_cox_hap2	100490	100491	rs34388845	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	High density lipoprotein cholesterol levels	392,965 European ancestry individuals	NA	6p22.1		rs34388845-G	0.21	2E-14		0.017	mmol/L decrease	NR [NR] (imputed)	N
585	chr6_cox_hap2	100490	100491	rs34388845	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	6p22.1		rs34388845-G	0.21	3E-12		0.013	% increase	NR [NR] (imputed)	N
585	chr6_cox_hap2	100490	100491	rs34388845	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Aspartate aminotransferase levels	424,778 European ancestry individuals	NA	6p22.1		rs34388845-G	0.21	2E-28		0.028	U/L decrease	NR [NR] (imputed)	N
585	chr6_cox_hap2	100490	100491	rs34388845	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		6p22.1	SCAND3	rs34388845-A	0.786103	2E-13		0.0122774	[0.009-0.0155] unit decrease	Affymetrix [12370749]	N
585	chr6_cox_hap2	100490	100491	rs34388845	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Sleep duration	384,317 European ancestry individuals	NA	6p22.1		rs34388845-G	0.2136	5E-10		0.01851	[0.013-0.024] unit decrease	Affymetrix, Illumina [10862567] (imputed)	N
585	chr6_cox_hap2	106978	106979	rs34556183	30846698	Dashti HS	2019-03-07	Nat Commun	Genome-wide association study identifies genetic loci for self-reported habitual sleep duration supported by accelerometer-derived estimates.	Sleep duration	446,118 European ancestry individuals	47,180  adults, 10,554 children or adolescents	6p22.1	NR	rs34556183-A	NR	2E-11		0.99	unit increase	Affymetrix [14661600] (imputed)	N
585	chr6_cox_hap2	116395	116396	rs9766115	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs9766115-?		1E-8	(Posterior corona radiata )			NR [8955960] (imputed)	N
585	chr6_cox_hap2	129777	129778	rs138803712	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs138803712-?		8E-6		1.06	[1.03-1.09]	Illumina [7645193] (imputed)	N
585	chr6_cox_hap2	129777	129778	rs138803712	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs138803712-?		2E-6		1.82	[1.43-2.33]	Illumina [7645193] (imputed)	N
586	chr6_cox_hap2	141520	141521	rs34724414	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium HDL	115,082 European ancestry individuals	NA	6p22.1		rs34724414-A	0.884653	3E-11		0.0400274	[0.028-0.052] unit increase	NR [11722792] (imputed)	N
586	chr6_cox_hap2	141520	141521	rs34724414	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium HDL particles	115,082 European ancestry individuals	NA	6p22.1		rs34724414-A	0.884653	1E-9		0.0360246	[0.024-0.048] unit increase	NR [11722792] (imputed)	N
586	chr6_cox_hap2	144909	144910	rs567880264	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in HDL	115,082 European ancestry individuals	NA	6p22.1		rs567880264-C	0.776342	2E-9		0.0308977	[0.021-0.041] unit increase	NR [11722792] (imputed)	N
586	chr6_cox_hap2	144909	144910	rs567880264	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-3 fatty acid levels	115,006 European ancestry individuals	NA	6p22.1		rs567880264-C	0.776356	2E-8		0.0308647	[0.02-0.042] unit increase	NR [11722792] (imputed)	N
586	chr6_cox_hap2	144909	144910	rs567880264	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	6p22.1		rs567880264-C	0.776342	3E-8		0.028853	[0.019-0.039] unit increase	NR [11722792] (imputed)	N
586	chr6_cox_hap2	144909	144910	rs567880264	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	6p22.1		rs567880264-C	0.776342	5E-8		0.0285476	[0.018-0.039] unit increase	NR [11722792] (imputed)	N
586	chr6_cox_hap2	148270	148271	rs114179634	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Liver iron content	32,858 European ancestry individuals	NA	6p22.1	ZBED9	rs114179634-?	NR	1E-89	(conditional)	0.29	NR mg/g increase	Affymetrix [9390170] (imputed)	N
586	chr6_cox_hap2	148270	148271	rs114179634	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	6p22.1		rs114179634-C	0.911	2E-146		0.51	[-0.55--0.47] % decrease	Affymetrix [NR] (imputed)	N
586	chr6_cox_hap2	152861	152862	rs13194504	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p22.1	NR	rs13194504-A	0.1122	1E-11		0.0127	[0.009-0.0164] unit decrease	NR [7666894] (imputed)	N
586	chr6_cox_hap2	152963	152964	rs7767008	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6p22.1	LINC00533	rs7767008-G	NR	4E-8		0.0185844	[0.012-0.025] unit decrease	Affymetrix [321114] (imputed)	N
586	chr6_cox_hap2	160893	160894	rs57794423	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p22.1	NR	rs57794423-C	0.01045	2E-8	(TNC)	0.08809	NR unit increase	Illumina [1671387] (imputed)	N
586	chr6_cox_hap2	160893	160894	rs57794423	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p22.1	NR	rs57794423-C	0.01045	2E-11	(COL18A1)	0.1135	NR unit increase	Illumina [1671387] (imputed)	N
586	chr6_cox_hap2	177489	177490	rs11966949	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p22.1	NR	rs11966949-?	NR	9E-6		0.3016	[0.17-0.44] unit increase	Illumina [at least 560000] (imputed)	N
586	chr6_cox_hap2	191444	191445	rs6939576	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6p22.1	NR	rs6939576-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
586	chr6_cox_hap2	191556	191557	rs6939297	28078323	Raj T	2016-12-21	Neurol Genet	Genetic architecture of age-related cognitive decline in African Americans.	Cognitive decline (age-related)	3,964 African American ancestry individuals.	NA	6p22.1	SCAND3, RPSAP2	rs6939297--?		5E-6		0.009	unit decrease	Illumina [13900000] (imputed)	N
586	chr6_cox_hap2	193471	193472	rs6908726	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small HDL	115,082 European ancestry individuals	NA	6p22.1		rs6908726-G	0.123912	6E-9		0.0360822	[0.024-0.048] unit decrease	NR [11722792] (imputed)	N
586	chr6_cox_hap2	193471	193472	rs6908726	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	6p22.1	ZBED9	rs6908726-C	0.8747	2E-13		0.026150687	[0.019-0.033] unit increase	Affymetrix [11515109] (imputed)	N
586	chr6_cox_hap2	194113	194113	rs139089584	31577861	Dai J	2019-10-31	Int J Cancer	Genome-wide association study of INDELs identified four novel susceptibility loci associated with lung cancer risk.	Lung cancer	20,871 European ancestry cases, 15,971 European ancestry controls, 2,331 Chinese ancestry cases, 3,077 Chinese ancestry controls	NA	6p22.1	LINC00533	rs139089584-TTTG	0.29	2E-7		0.92	[0.89-0.95]	Illumina [484196]	N
586	chr6_cox_hap2	198313	198314	rs9368570	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	RPSAP2	rs9368570-A	NR	2E-16		0.0261372	[0.02-0.032] unit decrease	Affymetrix [321016] (imputed)	N
586	chr6_cox_hap2	199165	199167	rs780222578	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6p22.1		rs780222578-C	0.155998	4E-9		0.0339542	[0.023-0.045] unit increase	NR [11722792] (imputed)	N
586	chr6_cox_hap2	199165	199167	rs780222578	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6p22.1		rs780222578-C	0.155998	3E-8		0.0311183	[0.02-0.042] unit increase	NR [11722792] (imputed)	N
586	chr6_cox_hap2	199165	199167	rs780222578	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6p22.1	RPSAP2	rs780222578-C	NR	4E-11		0.0287139	[0.02-0.037] unit decrease	Affymetrix [321114] (imputed)	N
586	chr6_cox_hap2	199165	199167	rs780222578	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p22.1	RPSAP2	rs780222578-C	NR	3E-11		0.0289999	[0.02-0.038] unit decrease	Affymetrix [323858] (imputed)	N
586	chr6_cox_hap2	200478	200479	rs7775835	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6p22.1		rs7775835-T	0.142781	3E-8		0.0324682	[0.021-0.044] unit increase	NR [11722792] (imputed)	N
586	chr6_cox_hap2	200478	200479	rs7775835	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6p22.1		rs7775835-T	0.142781	5E-8		0.0321912	[0.021-0.044] unit decrease	NR [11722792] (imputed)	N
586	chr6_cox_hap2	200478	200479	rs7775835	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Verbal-numerical reasoning	171,304 British ancestry individuals	NA	6p22.1		rs7775835-?	NR	2E-17				NR [7857346] (imputed)	N
586	chr6_cox_hap2	200478	200479	rs7775835	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depression	688,809 European ancestry individuals	NA	6p22.1	NR	rs7775835-T	NR	2E-8		5.588	z score decrease	Affymetrix [10847151] (imputed)	N
586	chr6_cox_hap2	200478	200479	rs7775835	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	RPSAP2	rs7775835-T	NR	9E-12		6.824	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
586	chr6_cox_hap2	203785	203786	rs185053056	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	67,764 individuals	NA	6p22.1	NR	rs185053056-?		1E-13				NR [8377093]	N
586	chr6_cox_hap2	203785	203786	rs185053056	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	65,967 individuals	NA	6p22.1	NR	rs185053056-?		1E-13				NR [8377093]	N
586	chr6_cox_hap2	203844	203845	rs190340765	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Strep throat	52,487 European ancestry cases, 22,017 European ancestry controls	NA	6p22.1	NR	rs190340765-?	NR	2E-6		0.0695	[0.041-0.098] unit decrease	Illumina [at least 560000] (imputed)	N
586	chr6_cox_hap2	205415	205416	rs145097508	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	6p22.1	NR	rs145097508-?	NR	2E-9		0.03206	[0.022-0.043] unit increase	Affymetrix [10847151] (imputed)	N
586	chr6_cox_hap2	205734	205735	rs9393926	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	6p22.1	SCAND3	rs9393926-G	0.122701	9E-25		0.0306832	[0.025-0.037] unit decrease	Affymetrix [NR] (imputed)	N
586	chr6_cox_hap2	212679	212680	rs9468413	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	RPSAP2	rs9468413-C	NR	4E-8		0.0222235	[0.014-0.03] unit decrease	Affymetrix [127266] (imputed)	N
586	chr6_cox_hap2	216035	216036	rs115592443	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	RPSAP2	rs115592443-T	NR	6E-9		0.0289543	[0.019-0.039] unit decrease	Affymetrix [321016] (imputed)	N
586	chr6_cox_hap2	219776	219777	rs150814685	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma and major depressive disorder	46,802 European ancestry asthma cases, 59,851 European ancestry major depressive disorder cases, 460,635 European ancestry controls	NA	6p22.1	C6orf100, GPX5, GPX6, HCG14, LOC401242, NKAPL, OR2B3, OR2J2, OR2J3, OR2W1, TRIM27, ZBED9, ZKSCAN3, ZKSCAN4, ZNF311, ZSCAN12, ZSCAN23, ZSCAN26, ZSCAN31, LOC100129636, PGBD1	rs150814685-?	NR	2E-11				Affymetrix [up to 13554551] (imputed)	N
586	chr6_cox_hap2	220965	220966	rs16894234	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6p22.1	NR	rs16894234-?	NR	3E-12				Affymetrix [~ 8270000] (imputed)	N
586	chr6_cox_hap2	235254	235255	rs1233578	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	RPSAP2	rs1233578-G	NR	2E-8		0.0228089	[0.015-0.031] unit decrease	Affymetrix [323858] (imputed)	N
586	chr6_cox_hap2	235254	235255	rs1233578	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p22.1	NR	rs1233578-G	0.18	4E-9		1.13	[1.08-1.18]	Affymetrix [9886854] (imputed)	N
586	chr6_cox_hap2	235254	235255	rs1233578	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p22.1	NR	rs1233578-G	0.18	4E-14			[NR]	Affymetrix [9886854] (imputed)	N
586	chr6_cox_hap2	235254	235255	rs1233578	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p22.1	NR	rs1233578-G	0.18	2E-11		1.11	[1.08-1.14]	Affymetrix [9886854] (imputed)	N
586	chr6_cox_hap2	235254	235255	rs1233578	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p22.1	NR	rs1233578-G	0.18	8E-14			[NR]	Affymetrix [9886854] (imputed)	N
586	chr6_cox_hap2	235254	235255	rs1233578	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in non-current smokers	16,488 European ancestry cases, 169,688 European ancestry controls	NA	6p22.1	NR	rs1233578-G	0.18	2E-11		1.11	[1.08-1.14]	Affymetrix [9886854] (imputed)	N
586	chr6_cox_hap2	235254	235255	rs1233578	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in never smokers	8,631 European ancestry cases, 120,544 European ancestry controls	NA	6p22.1	NR	rs1233578-G	0.18	3E-9		1.13	[1.09-1.18]	Affymetrix [9886854] (imputed)	N
586	chr6_cox_hap2	235254	235255	rs1233578	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in ever smokers	12,446 European ancestry cases, 59,145 European ancestry controls	NA	6p22.1	NR	rs1233578-G	0.18	3E-7		1.1	[1.06-1.15]	Affymetrix [9886854] (imputed)	N
586	chr6_cox_hap2	235254	235255	rs1233578	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	6p22.1	TRIM27	rs1233578-G	0.18	2E-17				NR [> 9500000] (imputed)	N
586	chr6_cox_hap2	235254	235255	rs1233578	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	6p22.1	TRIM27	rs1233578-G	0.17936300000000005	4E-12		1.0560242	[1.03991341766738-1.07238465256811]	NR [9572556] (imputed)	N
586	chr6_cox_hap2	235254	235255	rs1233578	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	6p22.1	NR	rs1233578-A	NR	1E-9		6.098	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
586	chr6_cox_hap2	235254	235255	rs1233578	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	RPSAP2	rs1233578-A	NR	5E-12		6.899	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
586	chr6_cox_hap2	235254	235255	rs1233578	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls, 2,149 African ancestry cases, 6,055 African ancestry controls, 1,239 Japanese ancestry cases, 3,976 Japanese ancestry controls, 606 Latino cases, 792 Latino controls	NA	6p22.1	GPX5, TRIM27	rs1233578-G	0.13	6E-7		1.09	[1.05-1.12]	Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
586	chr6_cox_hap2	235254	235255	rs1233578	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls	NA	6p22.1	GPX5, TRIM27	rs1233578-G	0.13	5E-9		0.1	[0.061-0.139] unit increase	Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
586	chr6_cox_hap2	237758	237759	rs7763390	33740410	Warrier V	2021-03-16	Lancet Psychiatry	Gene-environment correlations and causal effects of childhood maltreatment on physical and mental health: a genetically informed approach.	Childhood maltreatment	185,414 European ancestry individuals	NA	6p22.1	NR	rs7763390-A	0.84	7E-9		0.027	[0.017-0.037] unit decrease	Affymetrix, Illumina [at least 500527] (imputed)	N
586	chr6_cox_hap2	242773	242774	rs1233587	32358547	Persyn E	2020-05-01	Nat Commun	Genome-wide association study of MRI markers of cerebral small vessel disease in 42,310 participants.	White matter integrity (mean diffusivity)	17,467 European ancestry individuals	NA	6p22.1	ZFP57	rs1233587-T	0.295257	6E-12		0.325855	[0.23-0.42] unit decrease	Affymetrix [NR] (imputed)	N
586	chr6_cox_hap2	242773	242774	rs1233587	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs1233587-?		2E-8	(Anterior corona radiata)			NR [8955960] (imputed)	N
586	chr6_cox_hap2	244552	244553	rs1742741	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs1742741-?		4E-9	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
586	chr6_cox_hap2	244552	244553	rs1742741	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs1742741-?		8E-9	(Retrolenticular part of internal capsule)			NR [8955960] (imputed)	N
586	chr6_cox_hap2	244552	244553	rs1742741	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	6p22.1	NR	rs1742741-?		2E-8	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
586	chr6_cox_hap2	244552	244553	rs1742741	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	6p22.1	NR	rs1742741-?		2E-8	(Average across all tracts)			NR [8955960] (imputed)	N
586	chr6_cox_hap2	246711	246712	rs568609045	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium HDL	115,082 European ancestry individuals	NA	6p22.1		rs568609045-G	0.908816	1E-8		0.0550229	[0.036-0.074] unit increase	NR [11722792] (imputed)	N
586	chr6_cox_hap2	246711	246712	rs568609045	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large HDL	115,082 European ancestry individuals	NA	6p22.1		rs568609045-G	0.908816	4E-9		0.0550531	[0.037-0.073] unit increase	NR [11722792] (imputed)	N
586	chr6_cox_hap2	246711	246712	rs568609045	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in HDL	115,082 European ancestry individuals	NA	6p22.1		rs568609045-G	0.908816	4E-8		0.052683	[0.034-0.071] unit increase	NR [11722792] (imputed)	N
586	chr6_cox_hap2	250622	250623	rs1233595	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs1233595-?		2E-9	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
586	chr6_cox_hap2	250622	250623	rs1233595	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs1233595-?		1E-9	(Average across all tracts)			NR [8955960] (imputed)	N
586	chr6_cox_hap2	250622	250623	rs1233595	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs1233595-?		4E-9	(Average across all tracts)			NR [8955960] (imputed)	N
586	chr6_cox_hap2	250622	250623	rs1233595	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs1233595-?		3E-9	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
586	chr6_cox_hap2	257698	257699	rs1233604	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p22.1	AL662890.1	rs1233604-A	NR	4E-8		0.0237945	[0.015-0.032] unit decrease	Affymetrix [319769] (imputed)	N
586	chr6_cox_hap2	259993	259994	rs9257158	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p22.1	AL662890.1	rs9257158-G	NR	1E-8		0.0194989	[0.013-0.026] unit decrease	Affymetrix [323123] (imputed)	N
587	chr6_cox_hap2	287969	287970	rs9257190	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p22.1	AL662890.3	rs9257190-G	NR	2E-10		0.0253484	[0.018-0.033] unit decrease	Affymetrix [323858] (imputed)	N
587	chr6_cox_hap2	289354	289354	rs202065757	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p22.1	NR	rs202065757-?	NR	3E-6		0.1767	[0.1-0.25] unit increase	Illumina [at least 560000] (imputed)	N
587	chr6_cox_hap2	291000	291001	rs141456208	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs141456208-?		4E-6		1.75	[1.38-2.23]	Illumina [7645193] (imputed)	N
587	chr6_cox_hap2	293557	293558	rs7739915	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p22.1		rs7739915-G	0.829881	3E-8		0.0298334	[0.019-0.04] unit decrease	NR [11722792] (imputed)	N
587	chr6_cox_hap2	294072	294073	rs2013652	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p22.1		rs2013652-T	0.605	3E-27				Affymetrix [10369434] (imputed)	N
587	chr6_cox_hap2	298991	298992	rs4324798	19836008	Landi MT	2009-10-15	Am J Hum Genet	A genome-wide association study of lung cancer identifies a region of chromosome 5p15 associated with risk for adenocarcinoma.	Lung adenocarcinoma	5,739 European ancestry cases, 5,848 European ancestry controls	7,561 European ancestry cases, 13,818 European ancestry controls	6p22.1	TRNAA-UGC	rs4324798-A	0.09	2E-8		1.16	[1.09-1.24]	Illumina [515922]	N
587	chr6_cox_hap2	301798	301798	rs142204688	32227112	Lee MA	2020-03-30	Hum Mol Genet	Common variation at 16p11.2 is associated with glycosuria in pregnancy: Findings from a genome-wide association study in European women.	Glycosuria in pregnancy (offspring genotype effect)	747 European ancestry cases, 2,991 European ancestry controls	NA	6p22.1	NR	rs142204688-ATTT	0.024554775	2E-9		3.1145043	[2.74466796-3.4843406]	Illumina [9873828] (imputed)	N
587	chr6_cox_hap2	310072	310073	rs9257226	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6p22.1	XXbac-BPG308K3.5	rs9257226-G	NR	2E-9		0.0237897	[0.016-0.032] unit decrease	Affymetrix [321114] (imputed)	N
587	chr6_cox_hap2	314556	314557	rs67662386	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	6p22.1	NR	rs67662386-?	NR	5E-7		0.135361	[0.082-0.188] unit increase	NR [13958389] (imputed)	N
587	chr6_cox_hap2	314952	314953	rs187766969	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p22.1	NR	rs187766969-?	NR	3E-10		0.1907	[0.13-0.25] unit decrease	Illumina [at least 560000] (imputed)	N
587	chr6_cox_hap2	315317	315318	rs209181	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	XXbac-BPG308K3.5	rs209181-A	NR	3E-15		0.032556	[0.024-0.041] unit decrease	Affymetrix [323858] (imputed)	N
587	chr6_cox_hap2	315317	315318	rs209181	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	XXbac-BPG308K3.5	rs209181-A	NR	4E-15		0.0325128	[0.024-0.041] unit decrease	Affymetrix [127266] (imputed)	N
587	chr6_cox_hap2	316748	316749	rs3118359	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	6p22.1	intergenic	rs3118359-T	0.0838	3E-13		0.0378	[0.028-0.048] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
587	chr6_cox_hap2	318704	318705	rs3135296	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Neuroticism	274,107 British ancestry individuals	NA	6p22.1	NR	rs3135296-?	NR	6E-6		1.0090817	[1.01-1.01]	NR [8968716] (imputed)	N
587	chr6_cox_hap2	318704	318705	rs3135296	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Major depressive disorder (lifetime)	16,301 British ancestry cases, 50,870 British ancestry controls	NA	6p22.1	NR	rs3135296-?	NR	5E-7		1.1049724	[1.06-1.15]	NR [5276842] (imputed)	N
587	chr6_cox_hap2	318704	318705	rs3135296	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Help-seeking from a GP (without major depressive disorder symptoms)	8,632 British ancestry cases, 49,493 British ancestry controls	NA	6p22.1	NR	rs3135296-?	NR	1E-6		1.1350738	[1.08-1.19]	NR [5276842] (imputed)	N
587	chr6_cox_hap2	318704	318705	rs3135296	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Help-seeking from a GP	113,262 British ancestry cases, 219,360 British ancestry controls	NA	6p22.1	NR	rs3135296-A	0.88	4E-12		1.0570824	[1.04-1.07]	NR [5276842] (imputed)	N
587	chr6_cox_hap2	318919	318920	rs3131337	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	6p22.1	TRIM27	rs3131337-G	0.871891	1E-14		0.0229188	[0.017-0.029] unit increase	Affymetrix [NR] (imputed)	N
587	chr6_cox_hap2	318919	318920	rs3131337	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	6p22.1	NR	rs3131337-?	NR	7E-6		0.0811	[0.046-0.116] unit decrease	Illumina [at least 560000] (imputed)	N
587	chr6_cox_hap2	319308	319309	rs3132379	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	XXbac-BPG308K3.5	rs3132379-T	NR	1E-8		0.0232897	[0.015-0.031] unit decrease	Affymetrix [323858] (imputed)	N
587	chr6_cox_hap2	319308	319309	rs3132379	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	XXbac-BPG308K3.5	rs3132379-T	NR	2E-8		0.0229592	[0.015-0.031] unit decrease	Affymetrix [127266] (imputed)	N
587	chr6_cox_hap2	322858	322859	rs9278091	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA	6p22.1	NR	rs9278091-?	NR	6E-7		0.0586	[0.036-0.082] unit increase	Illumina [at least 560000] (imputed)	N
587	chr6_cox_hap2	323128	323129	rs150548387	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Daytime sleep phenotypes	874 European ancestry individuals	NA	6p22.1	RPL13P, ZNF90P2, HCG14, TRIM27	rs150548387-G	NR	7E-7	(daytime resting)	2.54	[1.54-3.54] unit decrease	Affymetrix [7141204] (imputed)	N
587	chr6_cox_hap2	326139	326140	rs9257248	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p22.1	NR	rs9257248-T	0.114	4E-11		0.0123	[0.0086-0.016] unit decrease	NR [7666894] (imputed)	N
587	chr6_cox_hap2	326139	326140	rs9257248	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p22.1	LOC442181, LOC401242	rs9257248-A	0.217	7E-20				Illumina [118177]	N
587	chr6_cox_hap2	339564	339565	rs561122079	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	6p22.1	XXbac-BPG308K3.5	rs561122079-T	0.0012	5E-6		1.4759	[0.84-2.11] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
587	chr6_cox_hap2	343938	343939	rs9257270	32592749	Butler-Laporte G	2020-06-24	Clin Microbiol Infect	Elevated body-mass index is associated with an increased risk of infectious disease admissions and mortality: a mendelian randomization study.	Sepsis (hospital admission)	4,403 European ancestry cases, 17,612 European ancestry controls	NA	6p22.1	ZFP57	rs9257270-A	0.8	2E-8		0.018	[0.012-0.024] unit increase	NR [NR]	N
587	chr6_cox_hap2	353681	353690	rs71554969	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p22.1	XXbac-BPG308K3.6	rs71554969-C	NR	8E-12		0.0218335	[0.016-0.028] unit decrease	Affymetrix [323123] (imputed)	N
587	chr6_cox_hap2	354451	354452	rs3131336	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	6p22.1	TRIM27	rs3131336-C	0.882895	2E-18		0.019064	[0.015-0.023] unit decrease	Affymetrix [12370749]	N
587	chr6_cox_hap2	362770	362771	rs3118365	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	6p22.1	LINC01623	rs3118365-A	0.0924	6E-12		0.0459	[0.033-0.059] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
587	chr6_cox_hap2	362801	362802	rs4484511	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6p22.1	NR	rs4484511-?	NR	7E-14				Affymetrix [~ 8270000] (imputed)	N
587	chr6_cox_hap2	363112	363113	rs113317416	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	XXbac-BPG308K3.6	rs113317416-T	NR	5E-10		0.0278345	[0.019-0.037] unit decrease	Affymetrix [321016] (imputed)	N
587	chr6_cox_hap2	371219	371220	rs146347028	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Fibroblast growth factor basic levels	7,565 Finnish ancestry individuals	NA	6p22.1	NR	rs146347028-C		3E-6		0.2123	[0.12-0.3] SD units decrease	NR [10700000] (imputed)	N
587	chr6_cox_hap2	377093	377094	rs7755875	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	6p22.1	TRIM27	rs7755875-A	0.3193	3E-11		0.002	[0.0014-0.0026] unit increase	Affymetrix [15275733] (imputed)	N
587	chr6_cox_hap2	391517	391518	rs3132374	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in diabetes	70,762 European ancestry individuals, 20,967 African American individuals	NA	6p22.1	TRIM27	rs3132374-C	0.916	3E-9		0.959	[0.64-1.27] unit increase	Affymetrix [NR] (imputed)	N
588	chr6_cox_hap2	395469	395470	rs209126	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p22.1	TRIM27	rs209126-T		6E-27		0.023	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
588	chr6_cox_hap2	400266	400267	rs3135293	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hyperthyroidism	3,557 European ancestry cases, 456,942 European ancestry controls, 994 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	6p22.1		rs3135293-C	NR	1E-13		0.329	[0.24-0.42] unit increase	Affymetrix, Illumina [25841580] (imputed)	N
588	chr6_cox_hap2	407175	407176	rs3131099	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Liver iron content	32,858 European ancestry individuals	NA	6p22.1	TRIM27	rs3131099-?	NR	9E-18	(conditional)	0.0654	NR mg/g decrease	Affymetrix [9390170] (imputed)	N
588	chr6_cox_hap2	412442	412443	rs144996521	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	6p22.1	TRIM27	rs144996521-G	0.999717	5E-10		0.148497	[0.1-0.2] unit increase	NR [13737936] (imputed)	N
588	chr6_cox_hap2	415534	415535	rs9468445	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p22.1	NR	rs9468445-?	NR	4E-9		0.1617	[0.11-0.21] unit increase	Illumina [at least 560000] (imputed)	N
588	chr6_cox_hap2	415673	415674	rs2015436	26087016	Pappa I	2015-06-18	Am J Med Genet B Neuropsychiatr Genet	A genome-wide approach to children's aggressive behavior: The EAGLE consortium.	Childhood and early adolescence aggressive behavior	18,988 European ancestry individuals	NA	6p22.1	TRIM27	rs2015436-T	0.73	2E-6				Affymetrix, Illumina [up to 3856236] (imputed)	N
588	chr6_cox_hap2	416392	416393	rs1233508	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	6p22.1	TRIM27	rs1233508-T	0.463	2E-16		0.0098	[0.0074-0.0122] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
588	chr6_cox_hap2	423444	423445	rs144965899	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6p22.1	Intergenic	rs144965899-C	0.0463	8E-11	(MTAG)	0.0206	[0.014-0.027] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
588	chr6_cox_hap2	424525	424526	rs3130895	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p22.1	TRIM27, C6orf100	rs3130895-A	0.218	4E-19				Illumina [118177]	N
588	chr6_cox_hap2	431132	431133	rs140736187	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p22.1	NR	rs140736187-?	NR	2E-7		0.2249	[0.14-0.31] unit increase	Illumina [at least 560000] (imputed)	N
588	chr6_cox_hap2	433475	433476	rs111469561	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p22.1	NR	rs111469561-?	NR	1E-6		0.29	[0.17-0.41] unit increase	Illumina [at least 560000] (imputed)	N
588	chr6_cox_hap2	433842	433843	rs763009	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	6p22.1	LINC01556, ZNF311	rs763009-?	NR	7E-7		0.014226723	[0.0086-0.0199] unit decrease	Illumina [27896057] (imputed)	N
588	chr6_cox_hap2	434987	434988	rs4947339	20526338	Johnson AD	2010-06-06	Nat Genet	Genome-wide meta-analyses identifies seven loci associated with platelet aggregation in response to agonists.	Platelet aggregation	Up to 3,991 European ancestry individuals	Up to 840 African American individuals	6p22.1	TRIM27	rs4947339-T	0.438	2E-6	(epinehprine)			Affymetrix, Illumina [~ 2330000] (imputed)	N
588	chr6_cox_hap2	435329	435330	rs3130844	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA	6p22.1	NR	rs3130844-?	NR	7E-6		0.0564	[0.032-0.081] unit increase	Illumina [at least 560000] (imputed)	N
588	chr6_cox_hap2	435570	435571	rs114683528	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Daytime sleep phenotypes	874 European ancestry individuals	NA	6p22.1	C6orf100, KRT18P1, TRIM27, HCG15, HCG16, ZNF311	rs114683528-T	NR	1E-6	(daytime resting)	2.435	[1.46-3.41] unit decrease	Affymetrix [7141204] (imputed)	N
588	chr6_cox_hap2	444956	444957	rs9257408	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	6p22.1	NR	rs9257408-G	0.4934	2E-10		0.0314	[0.022-0.041] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
588	chr6_cox_hap2	444956	444957	rs9257408	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	6p22.1		rs9257408-C	NR	3E-7		1.03	[1.02-1.04]	Affymetrix, Illumina [NR] (imputed)	N
588	chr6_cox_hap2	444956	444957	rs9257408	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p22.1	intergenic	rs9257408-C	0.41	7E-8	(EA)	1.02	[1-1.04] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
588	chr6_cox_hap2	444956	444957	rs9257408	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	46,785 European ancestry cases, 42,892 European ancestry controls	NA	6p22.1	intergenic	rs9257408-C	0.38	5E-7		1.05	[1.03-1.08]	Affymetrix, Illumina [~ 14000000] (imputed)	N
588	chr6_cox_hap2	444956	444957	rs9257408	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	15,748 European ancestry cases, 18,084 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls	6p22.1	Intergenic	rs9257408-C	0.38	5E-8		1.05	[1.03-1.08]	Affymetrix, Illumina [~ 11600000] (imputed)	N
588	chr6_cox_hap2	453089	453090	rs148696809	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	6p22.1		rs148696809-?	NR	7E-9				NR [NR]	N
588	chr6_cox_hap2	453089	453090	rs148696809	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma and major depressive disorder	46,802 European ancestry asthma cases, 59,851 European ancestry major depressive disorder cases, 460,635 European ancestry controls	NA	6p22.1	Intergenic	rs148696809-?	NR	5E-9				Affymetrix [up to 13554551] (imputed)	N
588	chr6_cox_hap2	453089	453090	rs148696809	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	6p22.1	Intergenic	rs148696809-T	0.8828	8E-20		0.0406	[0.032-0.049] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
588	chr6_cox_hap2	453089	453090	rs148696809	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Squamous cell lung carcinoma	7,426 European ancestry cases, 55,627 European ancestry controls	NA	6p22.1	LINC01556, ZNF311	rs148696809-C	0.086719155	4E-11		1.2477136	[1.168498995-1.332298319]	Illumina [10439017] (imputed)	N
588	chr6_cox_hap2	453089	453090	rs148696809	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	6p22.1	LINC01556, ZNF311	rs148696809-C	0.086604881	3E-12		1.1571189	[1.11078617-1.205384399]	Illumina [10439017] (imputed)	N
588	chr6_cox_hap2	462888	462889	rs3130887	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Polyunsaturated fatty acid levels	115,006 European ancestry individuals	NA	6p22.1		rs3130887-G	0.881305	8E-10		0.0379668	[0.026-0.05] unit increase	NR [11722792] (imputed)	N
588	chr6_cox_hap2	473094	473095	rs3129791	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p22.1	NR	rs3129791-A	0.1148	2E-11		0.0125	[0.0088-0.0162] unit decrease	NR [7666894] (imputed)	N
588	chr6_cox_hap2	484310	484311	rs114357009	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	6p22.1	C6orf100, HCG14, LOC401242, LOC100129636, OR2B3, OR2H1, OR2J2, OR2J3, OR2W1, OR5V1, OR10C1, OR11A1, OR12D2, OR12D3, OR14J1, TRIM27, ZNF311	rs114357009-A	0.049997	2E-10		1.1579555	[1.11-1.2]	Affymetrix [8274727] (imputed)	N
588	chr6_cox_hap2	492306	492307	rs77514138	32227112	Lee MA	2020-03-30	Hum Mol Genet	Common variation at 16p11.2 is associated with glycosuria in pregnancy: Findings from a genome-wide association study in European women.	Glycosuria in pregnancy (offspring genotype effect)	747 European ancestry cases, 2,991 European ancestry controls	NA	6p22.1	NR	rs77514138-T	0.01849013	2E-9		3.6386764	[3.217150999-4.060201879]	Illumina [9873828] (imputed)	N
588	chr6_cox_hap2	499520	499521	rs3130893	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium HDL	115,082 European ancestry individuals	NA	6p22.1		rs3130893-A	0.880989	2E-10		0.037629	[0.026-0.049] unit increase	NR [11722792] (imputed)	N
588	chr6_cox_hap2	499520	499521	rs3130893	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-6 fatty acid levels	115,006 European ancestry individuals	NA	6p22.1		rs3130893-A	0.880993	9E-9		0.0356831	[0.024-0.048] unit increase	NR [11722792] (imputed)	N
588	chr6_cox_hap2	499520	499521	rs3130893	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Linoleic acid levels	115,006 European ancestry individuals	NA	6p22.1		rs3130893-A	0.880993	5E-9		0.0364876	[0.024-0.049] unit increase	NR [11722792] (imputed)	N
588	chr6_cox_hap2	502087	502088	rs3131082	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p22.1	NR	rs3131082-?	NR	2E-7		0.1949	[0.12-0.27] unit decrease	Illumina [at least 560000] (imputed)	N
588	chr6_cox_hap2	503568	503569	rs3129795	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs3129795-?		8E-6		1.0526316	[1.03-1.08]	Illumina [7645193] (imputed)	N
588	chr6_cox_hap2	503568	503569	rs3129795	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs3129795-?		2E-6		1.6129031	[1.32-1.96]	Illumina [7645193] (imputed)	N
588	chr6_cox_hap2	510973	510974	rs3129797	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	6p22.1	ZNF311	rs3129797-C	0.882471	2E-20		0.0273248	[0.022-0.033] unit increase	Affymetrix [NR] (imputed)	N
589	chr6_cox_hap2	545390	545391	rs114631266	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p22.1	OR2W1	rs114631266-C	0.974	2E-6		0.284	[0.17-0.4] unit increase	Affymetrix, Illumina [7374092] (imputed)	N
589	chr6_cox_hap2	546732	546733	rs114415956	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	OR2P1P	rs114415956-T	NR	3E-10		0.0401608	[0.028-0.053] unit decrease	Affymetrix [321016] (imputed)	N
589	chr6_cox_hap2	549746	549746	rs559462124	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs559462124-?		5E-9	(Average across all tracts)			NR [8955960] (imputed)	N
589	chr6_cox_hap2	549746	549746	rs559462124	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs559462124-?		3E-9	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
589	chr6_cox_hap2	549746	549746	rs559462124	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs559462124-?		2E-9	(Posterior corona radiata )			NR [8955960] (imputed)	N
589	chr6_cox_hap2	549746	549746	rs559462124	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs559462124-?		2E-8	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
589	chr6_cox_hap2	549746	549746	rs559462124	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs559462124-?		2E-8	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
589	chr6_cox_hap2	549746	549746	rs559462124	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs559462124-?		2E-8	(Cingulate gyrus)			NR [8955960] (imputed)	N
589	chr6_cox_hap2	549746	549746	rs559462124	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs559462124-?		6E-11	(Posterior corona radiata )			NR [8955960] (imputed)	N
589	chr6_cox_hap2	549746	549746	rs559462124	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs559462124-?		4E-8	(Cingulate gyrus)			NR [8955960] (imputed)	N
589	chr6_cox_hap2	549746	549746	rs559462124	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs559462124-?		4E-11	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
589	chr6_cox_hap2	549746	549746	rs559462124	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs559462124-?		2E-8	(Average across all tracts)			NR [8955960] (imputed)	N
589	chr6_cox_hap2	549746	549746	rs559462124	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs559462124-?		2E-10	(Superior corona radiata)			NR [8955960] (imputed)	N
589	chr6_cox_hap2	549746	549746	rs559462124	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	6p22.1	NR	rs559462124-?		2E-8	(Average across all tracts)			NR [8955960] (imputed)	N
589	chr6_cox_hap2	549746	549746	rs559462124	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs559462124-?		4E-8	(Posterior corona radiata )			NR [8955960] (imputed)	N
589	chr6_cox_hap2	549746	549746	rs559462124	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs559462124-?		3E-8	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
589	chr6_cox_hap2	563515	563516	rs3131085	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p22.1	GABBR1, OR12D3, XXbac-BPG308K3.5, TRIM27, AL662791.1, OR2AD1P, OR2P1P, OR2B3, XXbac-BCX196D17.5, OR2N1P, OR2H4P, OR2B4P, XXbac-BPG308K3.6, RPL13P, ZNF90P2, HCG14, RNU6-930P, LINC01556, KRT18P1, RN7SL471P, HCG15, HCG16, ZNF311, XXbac-BPG258E24.10, OR2W1, SAR1P1, OR2J3, OR2J4P, OR2J2, AL645937.1, XXbac-BPG308J9.3, OR2U2P, OR14J1, OR5V1, OR10C1, OR11A1, XXbac-BPG13B8.11, OR2H1, UBDP1, MAS1LP1, MAS1L, RPS17P1, XXbac-BPG13B8.10, OR2I1P, UBD	rs3131085-A	0.07580321	1E-9	(EA, MHC class I polypeptide-related sequence A)	0.5111	[0.35-0.67] unit increase	Affymetrix [509946]	N
589	chr6_cox_hap2	567503	567504	rs3129787	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129787-?		6E-11	(Posterior corona radiata )			NR [8955960] (imputed)	N
589	chr6_cox_hap2	567503	567504	rs3129787	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129787-?		4E-11	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
589	chr6_cox_hap2	567503	567504	rs3129787	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129787-?		3E-8	(Cingulate gyrus)			NR [8955960] (imputed)	N
589	chr6_cox_hap2	567503	567504	rs3129787	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129787-?		5E-9	(Cingulate gyrus)			NR [8955960] (imputed)	N
589	chr6_cox_hap2	567503	567504	rs3129787	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129787-?		5E-12	(Posterior corona radiata )			NR [8955960] (imputed)	N
589	chr6_cox_hap2	567503	567504	rs3129787	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129787-?		2E-8	(Anterior corona radiata)			NR [8955960] (imputed)	N
589	chr6_cox_hap2	567503	567504	rs3129787	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129787-?		2E-12	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
589	chr6_cox_hap2	567503	567504	rs3129787	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129787-?		3E-9	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
589	chr6_cox_hap2	567503	567504	rs3129787	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129787-?		5E-8	(Posterior corona radiata )			NR [8955960] (imputed)	N
589	chr6_cox_hap2	576511	576512	rs3129788	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p22.1	OR2B3P, OR2J3	rs3129788-A	0.217	7E-19				Illumina [118177]	N
589	chr6_cox_hap2	581422	581423	rs115166140	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p22.1	NR	rs115166140-?	NR	1E-9		0.1623	[0.11-0.21] unit increase	Illumina [at least 560000] (imputed)	N
589	chr6_cox_hap2	583863	583864	rs4463283	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p22.1	OR2B3, OR2J3	rs4463283-A	0.06	1E-6	(EA)	2.61	[1.74-3.90]	Illumina [up to 547389]	N
589	chr6_cox_hap2	593960	593961	rs3129178	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p22.1	NR	rs3129178-A	0.0951	6E-9	(EA)	0.0669	[0.044-0.089] unit decrease	Illumina [~ 11800000] (imputed)	N
589	chr6_cox_hap2	600037	600038	rs3129106	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p22.1	NR	rs3129106-?	NR	7E-6		0.0757	[0.043-0.109] unit decrease	Illumina [at least 560000] (imputed)	N
589	chr6_cox_hap2	601098	601099	rs115328582	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	OR2J3	rs115328582-G	NR	4E-14		0.033147	[0.025-0.042] unit decrease	Affymetrix [321016] (imputed)	N
589	chr6_cox_hap2	603109	603110	rs3129109	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	6p22.1	OR2J3	rs3129109-T	0.39	2E-17		0.032	[NR] unit decrease	Affymetrix, Illumina [2834208] (imputed)	N
589	chr6_cox_hap2	621735	621736	rs3129119	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129119-?		3E-11	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
589	chr6_cox_hap2	621735	621736	rs3129119	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129119-?		2E-8	(Superior corona radiata)			NR [8955960] (imputed)	N
589	chr6_cox_hap2	621735	621736	rs3129119	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129119-?		2E-11	(Superior corona radiata)			NR [8955960] (imputed)	N
589	chr6_cox_hap2	621735	621736	rs3129119	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129119-?		1E-9	(Retrolenticular part of internal capsule)			NR [8955960] (imputed)	N
589	chr6_cox_hap2	630651	630652	rs3129120	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Major depressive disorder (lifetime)	16,301 British ancestry cases, 50,870 British ancestry controls	NA	6p22.1	NR	rs3129120-?	NR	4E-7		1.1049724	[1.06-1.15]	NR [5276842] (imputed)	N
589	chr6_cox_hap2	630651	630652	rs3129120	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Help-seeking from a psychiatrist	36,286 British ancestry cases, 297,126 British ancestry controls	NA	6p22.1	NR	rs3129120-T	0.876	1E-10		1.081081	NR	NR [5276842] (imputed)	N
589	chr6_cox_hap2	637623	637624	rs3130725	27668658	Iotchkova V	2016-11-01	Nat Genet	Discovery and refinement of genetic loci associated with cardiometabolic risk using dense imputation maps.	Cardiometabolic and hematological traits	up to 35,981 European ancestry individuals	up to 102,505 European ancestry individuals	6p22.1	ZNF311	rs3130725-G		3E-26	(WBC)	0.008	[0.006-0.01] unit decrease	Affymetrix, Illumina [17000000] (imputed)	N
589	chr6_cox_hap2	645371	645372	rs62405961	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	OR2J2	rs62405961-A	NR	2E-8		0.0707669	[0.046-0.095] unit decrease	Affymetrix [321016] (imputed)	N
589	chr6_cox_hap2	649152	649153	rs3129137	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129137-?		3E-8	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
589	chr6_cox_hap2	652518	652519	rs4947263	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p22.1	NR	rs4947263-T	0.1178	3E-12		0.0127	[0.0092-0.0162] unit decrease	NR [7666894] (imputed)	N
590	chr6_cox_hap2	657186	657187	rs3129151	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	NR	rs3129151-?	NR	7E-8		5.388	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
590	chr6_cox_hap2	657820	657821	rs3130740	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3130740-?		4E-9	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
590	chr6_cox_hap2	660614	660615	rs3129157	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p22.1	OR2J2	rs3129157-A		3E-33		0.068	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
590	chr6_cox_hap2	663423	663424	rs9257566	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	6p22.1	NR	rs9257566-?	NR	7E-30		1.2277772	[1.19-1.26]	Affymetrix, Illumina [12447948] (imputed)	N
590	chr6_cox_hap2	664514	664515	rs9295795	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	6p22.1		rs9295795-T	0.94311	2E-8		0.026	[0.016-0.036] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
590	chr6_cox_hap2	666595	666596	rs186983332	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p22.1	NR	rs186983332-?	NR	7E-6		0.2003	[0.11-0.29] unit decrease	Illumina [at least 560000] (imputed)	N
590	chr6_cox_hap2	667295	667296	rs114503016	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p22.1		rs114503016-C	0.986	4E-13				Affymetrix [10369434] (imputed)	N
590	chr6_cox_hap2	667295	667296	rs114503016	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p22.1		rs114503016-C	0.986	3E-16				Affymetrix [10369434] (imputed)	N
590	chr6_cox_hap2	668332	668333	rs3116816	32595297	Kweon K	2018-04-01	Soa Chongsonyon Chongsin Uihak	Genome-Wide Analysis Reveals Four Novel Loci for Attention-Deficit Hyperactivity Disorder in Korean Youths.	Attention deficit hyperactivity disorder (inattention symptoms)	27 Korean ancestry child sibling pairs	NA	6p22.1	OR2J2, OR14J1	rs3116816-A	0.398	2E-7				Affymetrix [432921]	N
590	chr6_cox_hap2	672055	672056	rs3130746	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p22.1	NR	rs3130746-?	NR	3E-6		0.1783	[0.1-0.25] unit increase	Illumina [at least 560000] (imputed)	N
590	chr6_cox_hap2	674649	674650	rs3129171	32358547	Persyn E	2020-05-01	Nat Commun	Genome-wide association study of MRI markers of cerebral small vessel disease in 42,310 participants.	White matter integrity (fractional anisotropy)	17,663 European ancestry individuals	NA	6p22.1	ZFP57a, OR2J2, OR2H4P, XXbac-BPG308J9.3	rs3129171-A	0.242404	2E-9		0.294752	[0.2-0.39] unit increase	Affymetrix [NR] (imputed)	N
590	chr6_cox_hap2	674649	674650	rs3129171	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129171-?		3E-9	(Retrolenticular part of internal capsule)			NR [8955960] (imputed)	N
590	chr6_cox_hap2	674649	674650	rs3129171	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129171-?		3E-9	(Anterior corona radiata)			NR [8955960] (imputed)	N
590	chr6_cox_hap2	674649	674650	rs3129171	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129171-?		2E-11	(Average across all tracts)			NR [8955960] (imputed)	N
590	chr6_cox_hap2	674649	674650	rs3129171	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129171-?		9E-9	(Anterior corona radiata)			NR [8955960] (imputed)	N
590	chr6_cox_hap2	674649	674650	rs3129171	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129171-?		4E-10	(Average across all tracts)			NR [8955960] (imputed)	N
590	chr6_cox_hap2	674649	674650	rs3129171	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129171-?		2E-8	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
590	chr6_cox_hap2	677484	677485	rs185008237	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	6p22.1	NR	rs185008237-?	NR	4E-6		0.0077326	[0.0045-0.011] unit increase	Affymetrix [805426] (imputed)	N
590	chr6_cox_hap2	683942	683943	rs114224598	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling miserable	376,097 European ancestry individuals	NA	6p22.1	NR	rs114224598-A	0.0456381	3E-8		5.52	z score increase	NR [10847151] (imputed)	N
590	chr6_cox_hap2	683942	683943	rs114224598	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p22.1	NR	rs114224598-?	NR	6E-9		0.175	[0.12-0.23] unit decrease	Illumina [at least 560000] (imputed)	N
590	chr6_cox_hap2	698957	698958	rs139598127	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p22.1	NR	rs139598127-A	0.01045	2E-8	(SBDS)	0.06239	NR unit increase	Illumina [1671387] (imputed)	N
590	chr6_cox_hap2	699616	699617	rs9257616	24047820	St Pourcain B	2013-09-18	Mol Autism	Common variation contributes to the genetic architecture of social communication traits.	Social communication problems	5,584 European ancestry children	1,364 European ancestry children	6p22.1	OR2J2, TRIM27, ZNF311, OR2W1, OR2B3, LOC651503, OR214J1, OR5V1, OR12D3, OR2J3	rs9257616-G	0.56	3E-7		0.093	[0.058-0.128] unit increase	Illumina [~ 2500000] (imputed)	N
590	chr6_cox_hap2	725146	725147	rs3117342	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Cognitive traits (MTAG)	331,679 British ancestry individuals	NA	6p22.1		rs3117342-?	NR	2E-12				NR [7857346] (imputed)	N
590	chr6_cox_hap2	725578	725579	rs3130820	29483656	Pardinas AF	2018-02-26	Nat Genet	Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.	Schizophrenia	40,675 European ancestry cases, 64,643 European ancestry controls	1,651 European ancestry cases, 4,111 cases, 142,717 European ancestry controls, 11,507 controls	6p22.1	xMHC	rs3130820-?	NR	2E-44		1.281	[1.25-1.32]	Illumina [8000000] (imputed)	N
590	chr6_cox_hap2	729491	729492	rs3117340	30271922	Clifton EAD	2018-05-03	Commun Biol	Genome-wide association study for risk taking propensity indicates shared pathways with body mass index.	Smoking status (ever vs never smokers)	207,229 European ancestry ever smoker cases, 243,177 European ancestry never smoker controls	NA	6p22.1	NR	rs3117340-G	0.622344	9E-7		0.0051953	[0.0031-0.0073] unit increase	Affymetrix [7736308] (imputed)	N
590	chr6_cox_hap2	729491	729492	rs3117340	30271922	Clifton EAD	2018-05-03	Commun Biol	Genome-wide association study for risk taking propensity indicates shared pathways with body mass index.	Self-reported risk-taking behaviour	113,882 European ancestry cases, 322,354 European ancestry controls	NA	6p22.1	OR14J1	rs3117340-G	0.62	7E-9		1.024	[1.016-1.033]	Affymetrix [7736308] (imputed)	N
590	chr6_cox_hap2	729491	729492	rs3117340	30181555	Strawbridge RJ	2018-09-04	Transl Psychiatry	Genetics of self-reported risk-taking behaviour, trans-ethnic consistency and relevance to brain gene expression.	Self-reported risk-taking behaviour	83,677 British ancestry cases, 244,662 British ancestry controls	2,764 South Asian ancestry cases, 3,139 African Caribbean ancestry cases, 16,169 European ancestry cases, 3,866 mixed ancestry cases, 4,267 South Asian ancestry controls, 4,341 African Caribbean ancestry controls, 31,814 European ancestry controls, 5,988 mixed ancestry controls	6p22.1	NR	rs3117340-T	0.38	1E-8		0.03	[0.02-0.04] unit decrease	Affymetrix [NR] (imputed)	N
590	chr6_cox_hap2	736409	736410	rs3117334	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	6p22.1	NR	rs3117334-T	0.501	7E-9		0.00785988	[0.0052-0.0105] unit increase	NR [~ 9732723] (imputed)	N
590	chr6_cox_hap2	742388	742389	rs3130825	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p22.1		rs3130825-?	NR	2E-9		0.0208387	[0.015-0.027] unit decrease	Affymetrix [20259828] (imputed)	N
590	chr6_cox_hap2	742806	742807	rs149016863	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs149016863-?		3E-6		1.74	[1.38-2.20]	Illumina [7645193] (imputed)	N
590	chr6_cox_hap2	743920	743921	rs149702363	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma and major depressive disorder	46,802 European ancestry asthma cases, 59,851 European ancestry major depressive disorder cases, 460,635 European ancestry controls	NA	6p22.1	OR2H1, OR5V1, OR10C1, OR11A1, OR12D2, OR12D3, OR14J1	rs149702363-?	NR	4E-10				Affymetrix [up to 13554551] (imputed)	N
590	chr6_cox_hap2	749025	749026	rs566858049	30181555	Strawbridge RJ	2018-09-04	Transl Psychiatry	Genetics of self-reported risk-taking behaviour, trans-ethnic consistency and relevance to brain gene expression.	Self-reported risk-taking behaviour	83,677 British ancestry cases, 244,662 British ancestry controls	2,764 South Asian ancestry cases, 3,139 African Caribbean ancestry cases, 16,169 European ancestry cases, 3,866 mixed ancestry cases, 4,267 South Asian ancestry controls, 4,341 African Caribbean ancestry controls, 31,814 European ancestry controls, 5,988 mixed ancestry controls	6p22.1	HLA	rs566858049-T	0.6	7E-9		0.031	[0.021-0.041] unit increase	Affymetrix [NR] (imputed)	N
590	chr6_cox_hap2	763115	763116	rs144447022	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	6p22.1		rs144447022-?	NR	4E-9				NR [NR]	N
590	chr6_cox_hap2	763115	763116	rs144447022	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	67,764 individuals	NA	6p22.1	NR	rs144447022-?		9E-28				NR [8377093]	N
590	chr6_cox_hap2	763115	763116	rs144447022	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms (MTAG)	955,012 individuals	NA	6p22.1	NR	rs144447022-?		3E-12				NR [520857]	N
590	chr6_cox_hap2	763115	763116	rs144447022	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Bipolar disorder (MTAG)	65,682 individuals	NA	6p22.1	NR	rs144447022-?		7E-20				NR [520857]	N
590	chr6_cox_hap2	763115	763116	rs144447022	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	6p22.1	XXbac-BPG308J9.3	rs144447022-T	NR	1E-13		0.036134973	[0.027-0.046] unit increase	Affymetrix [NR]	N
590	chr6_cox_hap2	763115	763116	rs144447022	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	6p22.1	NR	rs144447022-G	NR	2E-28		1.25	[NR]	Illumina [7158791] (imputed)	N
590	chr6_cox_hap2	767045	767046	rs3130834	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p22.1	NR	rs3130834-C	0.0955	5E-9	(EA)	0.0672	[0.045-0.09] unit decrease	Illumina [~ 11800000] (imputed)	N
590	chr6_cox_hap2	767461	767461	rs5875188	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p22.1	OR2J2, OR14J1	rs5875188-?	0.06	7E-6	(EA)	2.52	[1.66-3.83]	Illumina [up to 547389]	N
590	chr6_cox_hap2	771653	771654	rs116466121	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	6p22.1	Intergenic	rs116466121-A	0.8753	8E-9	(MTAG)	0.0156	[0.01-0.021] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
590	chr6_cox_hap2	771653	771654	rs116466121	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	6p22.1	Intergenic	rs116466121-A	0.8759	2E-12	(MTAG)	0.0177	[0.013-0.023] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
590	chr6_cox_hap2	773898	773899	rs9257681	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p22.1	NR	rs9257681-G	0.1151	2E-12		0.0131	[0.0094-0.0168] unit decrease	NR [7666894] (imputed)	N
590	chr6_cox_hap2	774976	774976	rs6149499	30093612	O'Mara TA	2018-08-09	Nat Commun	Identification of nine new susceptibility loci for endometrial cancer.	Endometrial cancer (endometrioid histology)	8,758 European ancestry cases, 46,126 European ancestry controls	NA	6p22.1	LOC101929006, LOC105375005	rs6149499-G	0.870856	6E-7		1.16	[1.09-1.23]	Affymetrix, Illumina [~ 11700000] (imputed)	N
590	chr6_cox_hap2	775337	775338	rs1884123	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	6p22.1	OR14J1	rs1884123-A	0.3614	3E-8		0.011205866	[0.0072-0.0152] unit decrease	Illumina [9339358] (imputed)	N
590	chr6_cox_hap2	776884	776885	rs1033568	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA		NR	rs1033568-A	0.429	1E-6		1.081	[1.05-1.11]	Illumina [11270530] (imputed)	N
590	chr6_cox_hap2	779348	779349	rs3117425	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	6p22.1	NR	rs3117425-T	NR	2E-8		0.02019	[0.013-0.027] unit decrease	Affymetrix [10847151] (imputed)	N
590	chr6_cox_hap2	779348	779349	rs3117425	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling nervous	373,121 European ancestry individuals	NA	6p22.1	ZNF391	rs3117425-T	0.119369	5E-8		5.47	z score decrease	NR [10847151] (imputed)	N
591	chr6_cox_hap2	790930	790931	rs3117426	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3117426-?		4E-10	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
591	chr6_cox_hap2	790930	790931	rs3117426	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3117426-?		2E-8	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
591	chr6_cox_hap2	790930	790931	rs3117426	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3117426-?		1E-9	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
591	chr6_cox_hap2	790930	790931	rs3117426	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3117426-?		4E-8	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
591	chr6_cox_hap2	793054	793055	rs3117427	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Receptor for advanced glycosylation end products levels	21,758 European ancestry individuals	9,173 individuals	6p22.1		rs3117427-T	0.9	2E-11		0.0988	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
591	chr6_cox_hap2	794146	794147	rs61735224	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p22.1	NR	rs61735224-T	0.01045	2E-8	(SBDS)	0.06239	NR unit increase	Illumina [1671387] (imputed)	N
591	chr6_cox_hap2	802591	802592	rs3129682	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p22.1	GABBR1, OR12D3, XXbac-BPG308K3.5, TRIM27, AL662791.1, OR2AD1P, OR2P1P, OR2B3, XXbac-BCX196D17.5, OR2N1P, OR2H4P, OR2B4P, XXbac-BPG308K3.6, RPL13P, ZNF90P2, HCG14, RNU6-930P, LINC01556, KRT18P1, RN7SL471P, HCG15, HCG16, ZNF311, XXbac-BPG258E24.10, OR2W1, SAR1P1, OR2J3, OR2J4P, OR2J2, AL645937.1, XXbac-BPG308J9.3, OR2U2P, OR14J1, OR5V1, OR10C1, OR11A1, XXbac-BPG13B8.11, OR2H1, UBDP1, MAS1LP1, MAS1L, RPS17P1, XXbac-BPG13B8.10, OR2I1P, UBD	rs3129682-T	0.07742915	1E-19	(EA, MHC class I polypeptide-related sequence B)	0.7369	[0.58-0.89] unit decrease	Affymetrix [509946]	N
591	chr6_cox_hap2	802880	802880	rs201452814	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-17 levels	7,760 Finnish ancestry individuals	NA	6p22.1	NR	rs201452814-GT		4E-6		0.2398	[0.14-0.34] SD units increase	NR [10700000] (imputed)	N
591	chr6_cox_hap2	802880	802880	rs201452814	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Fibroblast growth factor basic levels	7,565 Finnish ancestry individuals	NA	6p22.1	NR	rs201452814-GT		4E-6		0.242	[0.14-0.34] SD units increase	NR [10700000] (imputed)	N
591	chr6_cox_hap2	819193	819194	rs146977025	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p22.1	NR	rs146977025-T	0.01045	2E-8	(SBDS)	0.06239	NR unit increase	Illumina [1671387] (imputed)	N
591	chr6_cox_hap2	820949	820950	rs6903989	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	6p22.1	NR	rs6903989-C		2E-8		0.07	[0.05-0.09] unit increase	NR [NR]	N
591	chr6_cox_hap2	825575	825576	rs9257745	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	DDX6P1	rs9257745-T	NR	8E-10		0.0256365	[0.017-0.034] unit decrease	Affymetrix [321016] (imputed)	N
591	chr6_cox_hap2	833882	833883	rs7745768	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	6p22.1	NR	rs7745768-?	NR	8E-7		0.131782	[0.08-0.184] unit increase	NR [13958389] (imputed)	N
591	chr6_cox_hap2	836095	836096	rs148466862	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	6p22.1		rs148466862-?	NR	5E-12		0.0507	unit increase	NR [NR]	N
591	chr6_cox_hap2	836095	836096	rs148466862	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Subjective well-being (MTAG)	388,538 European ancestry individuals	NA	6p22.1	NR	rs148466862-T	0.0411	8E-12		0.0324	[0.023-0.042] unit decrease	Illumina [NR] (imputed)	N
591	chr6_cox_hap2	836095	836096	rs148466862	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Neuroticism (MTAG)	168,105 European ancestry individuals	NA	6p22.1	NR	rs148466862-T	0.0463	5E-10		0.0438	[0.03-0.058] unit increase	Illumina [NR] (imputed)	N
591	chr6_cox_hap2	836095	836096	rs148466862	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms (MTAG)	354,862 European ancestry individuals	NA	6p22.1	NR	rs148466862-T	0.0425	1E-10		0.0343	[0.024-0.045] unit increase	Illumina [NR] (imputed)	N
591	chr6_cox_hap2	841784	841785	rs9357080	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6p22.1	NR	rs9357080-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
591	chr6_cox_hap2	842573	842574	rs7761746	30108155	Hebbar P	2018-08-14	J Lipid Res	Genome-wide association study identifies novel recessive genetic variants for high TGs in an Arab population.	Triglyceride levels	1,353 Kuwaiti ancestry individuals	1,176 Kuwaiti ancestry individuals	6p22.1	OR5V1	rs7761746-A	NR	1E-9		6.066	z-score increase	Illumina [632375]	N
591	chr6_cox_hap2	845961	845962	rs9257774	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	6p22.1		rs9257774-?	NR	5E-8				Affymetrix [NR] (imputed)	N
591	chr6_cox_hap2	845961	845962	rs9257774	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p22.1		rs9257774-G	0.499	5E-24				Affymetrix [10369434] (imputed)	N
591	chr6_cox_hap2	847752	847753	rs7754402	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs7754402-?		2E-8	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
591	chr6_cox_hap2	850734	850735	rs2207699	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6p22.1	OR5V1	rs2207699-T	NR	2E-10		0.0197089	[0.014-0.026] unit increase	Affymetrix [321114] (imputed)	N
591	chr6_cox_hap2	854593	854594	rs9257794	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6p22.1		rs9257794-?	NR	7E-6		1.05596	[1.03-1.08]	NR [685523]	N
591	chr6_cox_hap2	854593	854594	rs9257794	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	OR5V1	rs9257794-T	NR	1E-10		0.0227562	[0.016-0.03] unit decrease	Affymetrix [323858] (imputed)	N
591	chr6_cox_hap2	854593	854594	rs9257794	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	OR5V1	rs9257794-T	NR	9E-11		0.022922	[0.016-0.03] unit decrease	Affymetrix [127266] (imputed)	N
591	chr6_cox_hap2	854593	854594	rs9257794	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6p22.1	OR5V1	rs9257794-T	NR	3E-9		0.0207731	[0.014-0.028] unit decrease	Affymetrix [321114] (imputed)	N
591	chr6_cox_hap2	856007	856008	rs3930883	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p22.1		rs3930883-G	0.357	7E-41				Affymetrix [10369434] (imputed)	N
591	chr6_cox_hap2	859675	859676	rs9257800	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Pork consumption	335,576 European ancestry individuals	NA	6p22.1	LRRC16A, SCGN, SLC17A4, SLC17A1	rs9257800-?	NR	7E-11		0.0040428	[-0.00326-0.01135] unit decrease	Affymetrix [25921788] (imputed)	N
591	chr6_cox_hap2	859675	859676	rs9257800	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Oily fish consumption	335,576 European ancestry individuals	NA	6p22.1	LRRC16A, SCGN, SLC17A4, SLC17A1, SLC17A3, SLC17A2	rs9257800-?	NR	7E-11		0.0241753	[0.017-0.031] unit increase	Affymetrix [25921788] (imputed)	N
591	chr6_cox_hap2	859940	859941	rs7772982	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	OR5V1	rs7772982-C	NR	7E-9		0.0217566	[0.014-0.029] unit decrease	Affymetrix [321016] (imputed)	N
591	chr6_cox_hap2	861708	861709	rs3749971	33909500	Moll M	2021-04-28	Am J Physiol Lung Cell Mol Physiol	A Systematic Analysis of Protein-altering Exonic Variants in Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease	up to 31,465 European ancestry cases, up to 203,688 European ancestry controls, up to 1,413 African ancestry cases, up to 6,080 African ancestry controls, up to 287 East Asian ancestry cases, up to 7,484 East Asian ancestry controls, up to 61 Hispanic cases, up to 613 Hispanic controls	NA	6p22.1	OR12D3	rs3749971-A	0.12	3E-11		1.11	[1.08 -1.14]	Illumina [at least 109036]	N
591	chr6_cox_hap2	861708	861709	rs3749971	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p22.1	OR12D3	rs3749971-A		2E-38		0.045	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
591	chr6_cox_hap2	861708	861709	rs3749971	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	6p22.1	NR	rs3749971-A	NR	3E-9		5.929	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
591	chr6_cox_hap2	862288	862289	rs9257802	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	OR5V1	rs9257802-T	NR	6E-12		0.026998	[0.019-0.035] unit decrease	Affymetrix [323858] (imputed)	N
591	chr6_cox_hap2	862288	862289	rs9257802	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	OR5V1	rs9257802-T	NR	2E-11		0.0261971	[0.019-0.034] unit decrease	Affymetrix [127266] (imputed)	N
591	chr6_cox_hap2	862288	862289	rs9257802	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p22.1	OR5V1	rs9257802-T	NR	7E-9		0.0225586	[0.015-0.03] unit decrease	Affymetrix [323858] (imputed)	N
591	chr6_cox_hap2	862288	862289	rs9257802	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	6p22.1	NR	rs9257802-?		3E-8	(Anterior corona radiata)			NR [8955960] (imputed)	N
591	chr6_cox_hap2	862288	862289	rs9257802	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	OR5V1	rs9257802-T	NR	7E-11		6.531	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
591	chr6_cox_hap2	865159	865160	rs238883	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p22.1	OR5V1	rs238883-G	NR	7E-10		0.0202353	[0.014-0.027] unit decrease	Affymetrix [323123] (imputed)	N
591	chr6_cox_hap2	865159	865160	rs238883	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Non-Hodgkin's lymphoma	2,400 European ancestry cases, 410,350 European ancestry controls	NA	6p22.1		rs238883-A	NR	3E-7		1.177995	NR	Affymetrix [7846216] (imputed)	N
591	chr6_cox_hap2	865159	865160	rs238883	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p22.1	OR5V1	rs238883-A	0.6771	1E-7		0.0371	[0.023-0.051] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
591	chr6_cox_hap2	870194	870195	rs576800986	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	6p22.1	OR5V1	rs576800986-A	0.0016	8E-6		0.994	[0.56-1.43] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
591	chr6_cox_hap2	870717	870718	rs9378134	23393555	Jensen RA	2013-02-05	PLoS One	Genome-wide association study of retinopathy in individuals without diabetes.	Retinopathy in non-diabetics	19,411 European ancestry individuals	NA	6p22.1	OR12D3	rs9378134-A	0.04	3E-6		0.49	[0.29-0.69] unit increase	Illumina [2675979] (imputed)	N
591	chr6_cox_hap2	874045	874046	rs238869	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	OR5V1	rs238869-C	NR	4E-8		0.0177413	[0.011-0.024] unit decrease	Affymetrix [323858] (imputed)	N
591	chr6_cox_hap2	874045	874046	rs238869	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	OR5V1	rs238869-C	NR	2E-8		0.0181435	[0.012-0.024] unit decrease	Affymetrix [127266] (imputed)	N
591	chr6_cox_hap2	874045	874046	rs238869	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6p22.1	OR5V1	rs238869-C	NR	2E-9		0.0190121	[0.013-0.025] unit decrease	Affymetrix [321114] (imputed)	N
591	chr6_cox_hap2	874045	874046	rs238869	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	6p22.1	NR	rs238869-C	0.3771	3E-8		1.0341262	[1.02-1.05]	Affymetrix, Illumina [NR] (imputed)	N
591	chr6_cox_hap2	874080	874081	rs3094549	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	OR5V1	rs3094549-C	NR	9E-18		0.0266542	[0.021-0.033] unit decrease	Affymetrix [321016] (imputed)	N
591	chr6_cox_hap2	874080	874081	rs3094549	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p22.1	OR5V1	rs3094549-C	NR	3E-10		0.0212798	[0.015-0.028] unit decrease	Affymetrix [323123] (imputed)	N
591	chr6_cox_hap2	874134	874135	rs3094548	21946350	Soler Artigas M	2011-09-25	Nat Genet	Genome-wide association and large-scale follow up identifies 16 new loci influencing lung function.	Pulmonary function	48,201 European ancestry individuals	46,411 European ancestry individuals	6p22.1	OR12D2	rs3094548-G	NR	1E-7	(FEV1)	0.029	[0.019-0.039] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
591	chr6_cox_hap2	874150	874152	rs34671475	32227112	Lee MA	2020-03-30	Hum Mol Genet	Common variation at 16p11.2 is associated with glycosuria in pregnancy: Findings from a genome-wide association study in European women.	Glycosuria in pregnancy (offspring genotype effect)	747 European ancestry cases, 2,991 European ancestry controls	NA	6p22.1	NR	rs34671475-C	0.03003544	3E-8		2.608679	[2.269056177-2.948302017]	Illumina [9873828] (imputed)	N
591	chr6_cox_hap2	874209	874210	rs74294664	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	150,266 East Asian ancestry individuals	NA	6p22.1		rs74294664-A	0.075018	4E-26		0.0570823	[0.046-0.068] unit increase	Illumina [13478778] (imputed)	N
591	chr6_cox_hap2	875263	875264	rs9257809	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p22.1	NR	rs9257809-G	0.1004	3E-8	(EA)	0.0627	[0.041-0.085] unit decrease	Illumina [~ 11800000] (imputed)	N
591	chr6_cox_hap2	875263	875264	rs9257809	27527254	Gharahkhani P	2016-08-12	Lancet Oncol	Genome-wide association studies in oesophageal adenocarcinoma and Barrett's oesophagus: a large-scale meta-analysis.	Barrett's esophagus  or Esophageal adenocarcinoma	6,167 European ancestry Barrett's oesophagus cases, 4,112 European ancestry esophageal adenocarcinoma cases, 17,159 European ancestry controls	NA	6p22.1	MHC	rs9257809-A		6E-9		1.23	[1.14-1.31]	Illumina [11951684] (imputed)	N
591	chr6_cox_hap2	875263	875264	rs9257809	27527254	Gharahkhani P	2016-08-12	Lancet Oncol	Genome-wide association studies in oesophageal adenocarcinoma and Barrett's oesophagus: a large-scale meta-analysis.	Barrett's esophagus	6,167 European ancestry cases, 17,159 European ancestry controls	NA	6p22.1	MHC	rs9257809-A		6E-9		1.2634	[1.18-1.34]	Illumina [11942825] (imputed)	N
591	chr6_cox_hap2	875263	875264	rs9257809	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p22.1	OR12D3, OR12D2	rs9257809-G	0.233	1E-20				Illumina [118177]	N
591	chr6_cox_hap2	875263	875264	rs9257809	22961001	Su Z	2012-09-09	Nat Genet	Common variants at the MHC locus and at chromosome 16q24.1 predispose to Barrett's esophagus.	Barrett's esophagus	Up to 1,852 European ancestry cases, 5,172 European ancestry controls	5,986 European ancestry cases, 12,825 European ancestry controls	6p22.1	OR2D12, OR2D13, MHC	rs9257809-A	0.87	4E-9		1.21	[1.13-1.28]	Illumina [521744]	N
591	chr6_cox_hap2	875519	875520	rs379157	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6p22.1	OR5V1	rs379157-G	NR	5E-8		0.0168887	[0.011-0.023] unit decrease	Affymetrix [321114] (imputed)	N
591	chr6_cox_hap2	875519	875520	rs379157	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	6p22.1	NR	rs379157-?	NR	2E-9	(MIC-A)	0.426671	[0.29-0.57] unit decrease	Illumina [11901634] (imputed)	N
591	chr6_cox_hap2	884212	884213	rs2073149	35215271	Almandil NB	2022-01-27	Pharmaceuticals (Basel)	Integration of Transcriptome and Exome Genotyping Identifies Significant Variants with Autism Spectrum Disorder.	Autism spectrum disorder	70 Arab ancestry cases, 132 Arab ancestry controls	NA	6p22.1	NA	rs2073149-A	0.5795	9E-9		0.2367	[0.143-0.3918]	Illumina [243345]	N
591	chr6_cox_hap2	884895	884896	rs7775217	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Treatment or medication use - levothyroxine sodium (UKB data field 20003_1141191044)	18,688 European ancestry cases, 437,588 European ancestry controls	NA	6p22.1		rs7775217-A	0.007711	3E-13		0.46	[0.33-0.59] unit increase	NR [11842647] (imputed)	N
591	chr6_cox_hap2	891102	891103	rs429479	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	6p22.1	OR12D2	rs429479-A	0.9041	2E-12		0.0471	[0.034-0.06] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
591	chr6_cox_hap2	891102	891103	rs429479	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	OR5V1	rs429479-A	NR	5E-15		7.818	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
591	chr6_cox_hap2	895116	895116	rs199997067	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mumps	31,227 European ancestry cases, 54,153 European ancestry controls	NA	6p22.1	NR	rs199997067-?	NR	5E-7		0.267	[0.16-0.37] unit decrease	Illumina [at least 560000] (imputed)	N
591	chr6_cox_hap2	896446	896447	rs389931	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure in major depressive disorder-negative individuals	10,701 European ancestry cases, 39,677 European ancestry controls	NA	6p22.1	NR	rs389931-T	0.9064421	7E-6		1.1273957	[1.07-1.18]	Affymetrix [7791636] (imputed)	N
591	chr6_cox_hap2	905755	905756	rs202217993	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Gynecologic disease	7,975 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs202217993-?		1E-8		1.18	[1.11-1.25]	Illumina [7645193] (imputed)	N
591	chr6_cox_hap2	905755	905756	rs202217993	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Gynecologic disease	7,315 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs202217993-?		2E-9				Illumina [7645193] (imputed)	N
591	chr6_cox_hap2	905782	905783	rs16894878	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	6p22.1	OR12D1P, OR11A1	rs16894878-A	0.001	1E-6		34.08	[3.52-329.69]	Illumina [1556551]	N
591	chr6_cox_hap2	915651	915652	rs3128851	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	OR5V1, OR11A1	rs3128851-T	NR	9E-12		0.0207103	[0.015-0.027] unit decrease	Affymetrix [321016] (imputed)	N
592	chr6_cox_hap2	917715	917716	rs3117191	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	6p22.1	Intergenic	rs3117191-T	NR	2E-6		0.022413	[0.013-0.032] unit decrease	Illumina [13520550] (imputed)	N
592	chr6_cox_hap2	924665	924666	rs55740552	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p22.1	NR	rs55740552-?	NR	1E-10		0.1637	[0.11-0.21] unit decrease	Illumina [at least 560000] (imputed)	N
592	chr6_cox_hap2	926867	926868	rs17177632	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	6p22.1		rs17177632-?	NR	5E-8				Affymetrix [NR] (imputed)	N
592	chr6_cox_hap2	926867	926868	rs17177632	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p22.1		rs17177632-A	0.988	2E-8				Affymetrix [10369434] (imputed)	N
592	chr6_cox_hap2	931780	931781	rs2023463	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in diabetes	70,762 European ancestry individuals, 20,967 African American individuals	NA	6p22.1	6M1-18	rs2023463-T	0.092	1E-11		1.01	[0.72-1.3] unit decrease	Affymetrix [NR] (imputed)	N
592	chr6_cox_hap2	934241	934242	rs2523443	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p22.1	NR	rs2523443-A	0.1188	1E-12		0.013	[0.0095-0.0165] unit decrease	NR [7666894] (imputed)	N
592	chr6_cox_hap2	950953	950954	rs2143668	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	6p22.1	OR2H1	rs2143668-A	0.8962	1E-7	(EA)	0.0033	[0.0021-0.0045] unit increase	Affymetrix [NR] (imputed)	N
592	chr6_cox_hap2	950953	950954	rs2143668	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	6p22.1	OR2H1	rs2143668-A	0.896	1E-9		0.0033	[0.0021-0.0045] unit increase	Affymetrix [NR] (imputed)	N
592	chr6_cox_hap2	953194	953195	rs4713226	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	UBDP1	rs4713226-A	NR	5E-10		0.0303439	[0.021-0.04] unit decrease	Affymetrix [321016] (imputed)	N
592	chr6_cox_hap2	953194	953195	rs4713226	22610502	Kennedy RB	2012-05-19	Hum Genet	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IFN-alpha)	Up to 512 European ancestry individuals, up to 199 African American individuals	NA	6p22.1	OR2H1	rs4713226-A		2E-8	(AA)			Illumina [NR]	N
592	chr6_cox_hap2	961755	961756	rs77454196	33002439	Jin G	2020-10-01	Lancet Oncol	Genetic risk, incident gastric cancer, and healthy lifestyle: a meta-analysis of genome-wide association studies and prospective cohort study.	Gastric cancer	10,254 Han Chinese ancestry cases, 10,914 Han Chinese ancestry controls	NA	6p22.1	NR	rs77454196-A	0.05	3E-6		0.78	NR	Affymetrix, Illumina [6957974] (imputed)	N
592	chr6_cox_hap2	964482	964483	rs72500877	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	349,856 European ancestry individuals, 91,908 East Asian ancestry individuals	NA	6p22.1		rs72500877-T	NR	2E-9		0.0296	[0.02-0.039] unit increase	Affymetrix, Illumina [20529536] (imputed)	N
592	chr6_cox_hap2	977021	977022	rs1233493	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs1233493-?		1E-8	(Superior corona radiata)			NR [8955960] (imputed)	N
592	chr6_cox_hap2	977021	977022	rs1233493	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs1233493-?		3E-9	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
592	chr6_cox_hap2	977021	977022	rs1233493	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in non-diabetics	152,624 European ancestry individuals, 36,369 African American individuals	NA	6p22.1	MAS1L	rs1233493-A	0.89	9E-9		0.481	[0.32-0.65] unit increase	Affymetrix [NR] (imputed)	N
592	chr6_cox_hap2	980510	980511	rs1233491	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p22.1	MAS1L, LOC729653	rs1233491-C	0.23	1E-20				Illumina [118177]	N
592	chr6_cox_hap2	980510	980511	rs1233491	25827949	Kunz M	2015-05-04	Exp Dermatol	Genome-wide association study identifies new susceptibility loci for cutaneous lupus erythematosus.	Cutaneous lupus erythematosus	151 European ancestry cases, 1,288 European ancestry controls	219 European ancestry cases, 262 European ancestry controls	6p22.1	MAS1L	rs1233491-C	0.088	8E-10		2.2	[1.58-3.08]	Affymetrix [906600]	N
592	chr6_cox_hap2	988988	988989	rs1233485	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p22.1		rs1233485-T	0.731	7E-12				Affymetrix [10369434] (imputed)	N
592	chr6_cox_hap2	989765	989766	rs3131019	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	6p22.1		rs3131019-?	NR	5E-8				Affymetrix [NR] (imputed)	N
592	chr6_cox_hap2	996194	996195	rs1233480	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p22.1	NR	rs1233480-T	0.1095	5E-8	(EA)	0.0586	[0.037-0.08] unit decrease	Illumina [~ 11800000] (imputed)	N
592	chr6_cox_hap2	999004	999005	rs385816	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p22.1	NR	rs385816-?	NR	5E-7		0.0742	[0.045-0.103] unit increase	Illumina [at least 560000] (imputed)	N
592	chr6_cox_hap2	1006069	1006070	rs2523430	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p22.1		rs2523430-G	0.513	3E-9				Affymetrix [10369434] (imputed)	N
592	chr6_cox_hap2	1006755	1006756	rs12210150	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	153,512 East Asian ancestry individuals	NA	6p22.1		rs12210150-T	0.038389	1E-12		0.0584816	[0.042-0.075] unit increase	Illumina [13479135] (imputed)	N
592	chr6_cox_hap2	1029421	1029422	rs362538	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	6p22.1		rs362538-G	0.902	2E-109		0.4	[-0.44--0.36] % decrease	Affymetrix [NR] (imputed)	N
592	chr6_cox_hap2	1029421	1029422	rs362538	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular hemoglobin	20,714 Amish, White ancestry individuals, 447 Asian ancestry individuals, 11,246 Black individuals, 13,834 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	6p22.1		rs362538-C	NR	3E-10		0.2	[0.14-0.26] unit increase	Illumina [94681438]	N
592	chr6_cox_hap2	1034606	1034607	rs3094575	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	OR2I1P	rs3094575-T	NR	2E-8		0.0185304	[0.012-0.025] unit decrease	Affymetrix [321016] (imputed)	N
592	chr6_cox_hap2	1038657	1038658	rs453658	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	121,047 East Asian ancestry individuals	NA	6p22.1	NR	rs453658-G	0.306783	4E-12		0.030549	[0.022-0.039] SD units decrease	Affymetrix, Illumina [16286195] (imputed)	N
592	chr6_cox_hap2	1039686	1039687	rs16895057	23456168	Hao Y	2013-03-03	Hum Genet	Genome-wide association study in Han Chinese identifies three novel loci for human height.	Height	6,534 Han Chinese ancestry individuals	1,881 Han Chinese ancestry individuals from 637 families	6p22.1	OR2I1P	rs16895057-T	0.95	3E-6		0.153	[0.088-0.218] unit increase	Affymetrix [1532051] (imputed)	N
592	chr6_cox_hap2	1040128	1040129	rs11724	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	6p22.1		rs11724-G	0.692447	2E-8		0.0220867	[0.014-0.03] unit increase	Illumina [13476299] (imputed)	N
592	chr6_cox_hap2	1042485	1042486	rs8337	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p22.1	UBD	rs8337-C		1E-19		0.022	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
592	chr6_cox_hap2	1045186	1045187	rs11970475	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	6p22.1	UBD	rs11970475-A	0.19	2E-24		0.07	[0.054-0.086] unit increase	Affymetrix, Illumina [2704730] (imputed)	N
593	chr6_cox_hap2	1049753	1049754	rs422878	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	GABBR1	rs422878-T	NR	1E-8		0.0205792	[0.014-0.028] unit decrease	Affymetrix [321016] (imputed)	N
593	chr6_cox_hap2	1049753	1049754	rs422878	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	6p22.1	UBD, OR2H2	rs422878-C	0.81	1E-8		5.72	z-score increase	Affymetrix [4311822] (imputed)	N
593	chr6_cox_hap2	1049783	1049784	rs115070292	27922604	Yu H	2016-12-06	Mol Psychiatry	Common variants on 2p16.1, 6p22.1 and 10q24.32 are associated with schizophrenia in Han Chinese population.	Schizophrenia	4,384 Han Chinese ancestry cases and 5,770 Han Chinese ancestry controls	4,339 Han Chinese ancestry cases and 7,043 Han Chinese ancestry controls	6p22.1	GABBR1	rs115070292-?		5E-10		1.3	[1.22-1.38]	Illumina [at least 473583] (imputed)	N
593	chr6_cox_hap2	1053420	1053421	rs413082	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	GABBR1	rs413082-A	NR	3E-8		0.0199613	[0.013-0.027] unit decrease	Affymetrix [321016] (imputed)	N
593	chr6_cox_hap2	1057017	1057018	rs142818680	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mumps	31,227 European ancestry cases, 54,153 European ancestry controls	NA	6p22.1	NR	rs142818680-?	NR	7E-12		0.5892	[0.42-0.76] unit decrease	Illumina [at least 560000] (imputed)	N
593	chr6_cox_hap2	1058573	1058574	rs3025652	31272903	Sunadome H	2019-07-01	Allergol Int	Correlation between eosinophil count, its genetic background and body mass index: The Nagahama Study.	Eosinophil counts	4,650 East Asian ancestry individuals	NA	6p22.1	NR	rs3025652-A	0.23	4E-7		0.1237	NR unit increase	Illumina [103680] (imputed)	N
593	chr6_cox_hap2	1065607	1065608	rs1233396	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in HDL	115,082 European ancestry individuals	NA	6p22.1		rs1233396-G	0.861673	7E-10		0.0329165	[0.022-0.043] unit increase	NR [11722792] (imputed)	N
593	chr6_cox_hap2	1065607	1065608	rs1233396	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium HDL	115,082 European ancestry individuals	NA	6p22.1		rs1233396-G	0.861673	3E-9		0.0327783	[0.022-0.044] unit increase	NR [11722792] (imputed)	N
593	chr6_cox_hap2	1066897	1066898	rs926552	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	6p22.1	NA	rs926552-G		4E-10		0.0184243	[0.013-0.024] unit increase	Illumina [13288253] (imputed)	N
593	chr6_cox_hap2	1066897	1066898	rs926552	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Major depressive disorder (lifetime)	16,301 British ancestry cases, 50,870 British ancestry controls	NA	6p22.1	NR	rs926552-G	0.86	4E-8		1.1074197	[1.07-1.14]	NR [5276842] (imputed)	N
593	chr6_cox_hap2	1066897	1066898	rs926552	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking initiation (ever regular vs never regular)	up to 433,216 European ancestry individuals	NA	6p22.1	SNORD32B	rs926552-A	0.134	1E-8		0.0181	[0.012-0.024] unit decrease	Illumina [~ 250000] (imputed)	N
593	chr6_cox_hap2	1066897	1066898	rs926552	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Diastolic blood pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	154,543 European ancestry individuals, 26,183 South Asian ancestry individuals	6p22.1	SNORD32B	rs926552-T	0.111	7E-8		0.26	[0.16-0.36] unit decrease	Illumina [247039]	N
593	chr6_cox_hap2	1068461	1068462	rs1233393	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p22.1	NR	rs1233393-G	0.12	3E-7		1.13	[1.08-1.18]	Affymetrix [9886854] (imputed)	N
593	chr6_cox_hap2	1068461	1068462	rs1233393	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p22.1	NR	rs1233393-G	0.12	2E-11			[NR]	Affymetrix [9886854] (imputed)	N
593	chr6_cox_hap2	1068461	1068462	rs1233393	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p22.1	NR	rs1233393-G	0.12	2E-9		1.11	[1.07-1.15]	Affymetrix [9886854] (imputed)	N
593	chr6_cox_hap2	1068461	1068462	rs1233393	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p22.1	NR	rs1233393-G	0.12	3E-11			[NR]	Affymetrix [9886854] (imputed)	N
593	chr6_cox_hap2	1068461	1068462	rs1233393	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in non-current smokers	16,488 European ancestry cases, 169,688 European ancestry controls	NA	6p22.1	NR	rs1233393-G	0.12	2E-9		1.11	[1.07-1.15]	Affymetrix [9886854] (imputed)	N
593	chr6_cox_hap2	1068461	1068462	rs1233393	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in never smokers	8,631 European ancestry cases, 120,544 European ancestry controls	NA	6p22.1	NR	rs1233393-G	0.12	2E-7		1.13	[1.08-1.18]	Affymetrix [9886854] (imputed)	N
593	chr6_cox_hap2	1068461	1068462	rs1233393	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in ever smokers	12,446 European ancestry cases, 59,145 European ancestry controls	NA	6p22.1	NR	rs1233393-G	0.12	3E-6		1.11	[1.06-1.16]	Affymetrix [9886854] (imputed)	N
593	chr6_cox_hap2	1068461	1068462	rs1233393	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p22.1	NR	rs1233393-G	0.1223	8E-13		0.0129	[0.0094-0.0164] unit decrease	NR [7666894] (imputed)	N
593	chr6_cox_hap2	1070224	1070225	rs12524535	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Experiencing mood swings	373,733 European ancestry individuals	NA	6p22.1	TRIM27	rs12524535-A	0.0690112	8E-9		5.77	z score decrease	NR [10847151] (imputed)	N
593	chr6_cox_hap2	1074586	1074587	rs2235698	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6p22.1		rs2235698-?	NR	2E-7		0.935071	[0.91-0.96]	NR [685523]	N
593	chr6_cox_hap2	1074586	1074587	rs2235698	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	6p22.1	OR2H2	rs2235698-G	0.23	2E-10		6.36	z-score increase	Affymetrix [4312306] (imputed)	N
593	chr6_cox_hap2	1079288	1079289	rs3095274	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p22.1		rs3095274-A	0.295	1E-10				Affymetrix [10369434] (imputed)	N
593	chr6_cox_hap2	1081875	1081876	rs17508548	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	6p22.1	NR	rs17508548-?	NR	1E-8		0.02016	[0.013-0.027] unit increase	Affymetrix [10847151] (imputed)	N
593	chr6_cox_hap2	1083570	1083571	rs56020557	28440896	Yin X	2017-04-25	Am J Med Genet B Neuropsychiatr Genet	Genome-wide meta-analysis identifies a novel susceptibility signal at CACNA2D3 for nicotine dependence.	Nicotine dependence	7,297 European ancestry cases, 5,577 European ancestry controls, 918 European ancestry whole genome sequenced cases, 921 European ancestry whole genome sequenced controls, African American cases, 1,500 African American controls	NA	6p22.1	GABBR1	rs56020557-T		5E-6	(EA)	0.05	[0.03-0.07] unit increase	Illumina [at least 3251541] (imputed)	N
593	chr6_cox_hap2	1084181	1084182	rs28893517	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	6p22.1	NR	rs28893517-G	NR	5E-10		0.02848	[0.019-0.037] unit increase	Affymetrix [10847151] (imputed)	N
593	chr6_cox_hap2	1084890	1084891	rs28986304	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	6p22.1	NR	rs28986304-T	NR	3E-9		5.932	z score decrease	Affymetrix [10847151] (imputed)	N
593	chr6_cox_hap2	1084890	1084891	rs28986304	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	6p22.1	TRIM27	rs28986304-T	0.126444	8E-10		6.14	z score decrease	NR [10847151] (imputed)	N
593	chr6_cox_hap2	1086123	1086124	rs28986306	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Depression	at least 5,919 European ancestry cases, at least 130,691 European ancestry controls	634,037 European ancestry cases, 1,308,690 European ancestry controls	6p22.1	GABBR1	rs28986306-C	0.0507	2E-9		0.02608803	[0.016-0.036] unit decrease	NR [9417325] (imputed)	N
593	chr6_cox_hap2	1087853	1087854	rs362517	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	GABBR1	rs362517-A	NR	1E-10		0.0398451	[0.028-0.052] unit decrease	Affymetrix [321016] (imputed)	N
593	chr6_cox_hap2	1089124	1089125	rs3025642	30172743	Liang X	2018-08-30	Bone	Assessing the genetic correlations between early growth parameters and bone mineral density: A polygenic risk score analysis.	Ulna and radius bone mineral density	2,286 European ancestry individuals	NA	6p22.1	GABBR1	rs3025642-?	NR	8E-7				Affymetrix [753382]	N
593	chr6_cox_hap2	1089649	1089650	rs2267633	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	6p22.1	intergenic	rs2267633-A	0.87355	1E-9		6.079	z score decrease	Illumina [18485882] (imputed)	N
593	chr6_cox_hap2	1094213	1094214	rs740883	30804558	Grove J	2019-02-25	Nat Genet	Identification of common genetic risk variants for autism spectrum disorder.	Autism spectrum disorder	18,381 European ancestry cases, 27,969 European ancestry controls	2,119 European ancestry cases, 142,379 European ancestry controls	6p22.1	Intergenic	rs740883-T	0.088	1E-6		1.1160713	[NR]	Illumina [9112387] (imputed)	N
593	chr6_cox_hap2	1098799	1098800	rs41286287	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	6p22.1	NR	rs41286287-A	NR	2E-8		5.59	z score increase	Affymetrix [10847151] (imputed)	N
593	chr6_cox_hap2	1098799	1098800	rs41286287	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling miserable	376,097 European ancestry individuals	NA	6p22.1	TRIM27	rs41286287-A	0.0707157	1E-8		5.72	z score increase	NR [10847151] (imputed)	N
593	chr6_cox_hap2	1099244	1099245	rs29253	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	GABBR1	rs29253-G	NR	3E-12		0.0329464	[0.024-0.042] unit decrease	Affymetrix [321016] (imputed)	N
593	chr6_cox_hap2	1113074	1113075	rs41291770	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	145,648 East Asian ancestry individuals	NA	6p22.1	NR	rs41291770-T	0.792877	4E-11		0.030339	[0.021-0.039] SD units decrease	Affymetrix, Illumina [16710488] (imputed)	N
593	chr6_cox_hap2	1115051	1115052	rs143229677	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	6p22.1	GABBR1	rs143229677-A	0.0035	3E-13		0.2309051	[0.17-0.29] unit increase	Affymetrix [~ 2500000] (imputed)	N
593	chr6_cox_hap2	1120739	1120740	rs62392942	28440896	Yin X	2017-04-25	Am J Med Genet B Neuropsychiatr Genet	Genome-wide meta-analysis identifies a novel susceptibility signal at CACNA2D3 for nicotine dependence.	Nicotine dependence	7,297 European ancestry cases, 5,577 European ancestry controls, 918 European ancestry whole genome sequenced cases, 921 European ancestry whole genome sequenced controls, African American cases, 1,500 African American controls	NA	6p22.1	GABBR1	rs62392942-T		1E-6		0.06	[0.04-0.08] unit decrease	Illumina [at least 3251541] (imputed)	N
593	chr6_cox_hap2	1122316	1122317	rs111508444	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p22.1	NR	rs111508444-A	0.945	2E-19		1.522	[1.43-1.61]	Illumina [11270530] (imputed)	N
593	chr6_cox_hap2	1125851	1125852	rs3095267	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine without aura	7,107 European ancestry cases, 69,427 European ancestry controls	NA	6p22.1	intergenic	rs3095267-?	0.81	9E-6		1.12	[1.06-1.18]	Affymetrix, Illumina [~ 2300000] (imputed)	N
593	chr6_cox_hap2	1125906	1125907	rs3131856	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical thickness (MOSTest)	26,502 European ancestry individuals	NA	6p22.1	RALGPS2, ANGPTL1	rs3131856-?		2E-10				NR [7428630] (imputed)	N
593	chr6_cox_hap2	1125906	1125907	rs3131856	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	6p22.1	LRRC16A, SCGN, SLC17A4, SLC17A1, SLC17A3, SLC17A2, TRIM38, HIST1H1A, HIST1H3A, HIST1H4A, HIST1H4B, HIST1H3B, HIST1H2AB, HIST1H2BB, HIST1H3C, HIST1H1C, HFE, HIST1H2BC, HIST1H2AC, HIST1H2BD, HIST1H2BE, HIST1H4D, HIST1H3D, HIST1H2AD, HIST1H2BF, HIST1H4E, HIST1H3G, HIST1H2BI, BTN3A2, BTN2A2, BTN3A1, BTN3A3, BTN2A1, BTN1A1, HMGN4, ABT1, ZNF322, HIST1H2BJ, HIST1H2AG, HIST1H2BK, HIST1H4I, HIST1H2AH, POM121L2, ZNF391, ZNF184, HIST1H2BL, HIST1H2AI, HIST1H3H, HIST1H2AJ, HIST1H2BM, HIST1H4J, HIST1H4K, HIST1H2AK, HIST1H2BN, HIST1H2AL, HIST1H1B, HIST1H3I, HIST1H4L, HIST1H3J, HIST1H2AM, HIST1H2BO, OR2B2, OR2B6, ZNF165, ZSCAN16, ZKSCAN8, ZSCAN9, ZKSCAN4, NKAPL, PGBD1, ZSCAN31, ZKSCAN3, ZSCAN12, ZSCAN23, GPX6, SCAND3, TRIM27, C6orf100, ZNF311, OR2W1, OR2B3, OR2J1, OR2J3, OR2J2, OR14J1, OR5V1, OR12D3, OR12D2, OR11A1, OR10C1, OR2H1, MAS1L, UBD, GABBR1, OR2H2	rs3131856-?		7E-16				NR [7428630] (imputed)	N
593	chr6_cox_hap2	1125906	1125907	rs3131856	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p22.1	NR	rs3131856-?	NR	1E-7		0.1953	[0.12-0.27] unit decrease	Illumina [at least 560000] (imputed)	N
593	chr6_cox_hap2	1128502	1128503	rs9257927	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs9257927-?		1E-8		1.66	[1.39-1.97]	Illumina [7645193] (imputed)	N
593	chr6_cox_hap2	1130238	1130239	rs29232	19664746	Tse KP	2009-08-05	Am J Hum Genet	Genome-wide association study reveals multiple nasopharyngeal carcinoma-associated loci within the HLA region at chromosome 6p21.3.	Nasopharyngeal carcinoma	277 Han Chinese ancestry cases, 285 Han Chinese ancestry controls	635 Han Chinese ancestry cases, 1,640 Han Chinese ancestry controls	6p22.1	GABBR1	rs29232-A	0.46	9E-17		1.67	[1.48-1.88]	Illumina [480365]	N
593	chr6_cox_hap2	1130584	1130585	rs3117318	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fish- and plant-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	6p22.1	LRRC16A, SCGN, SLC17A4, SLC17A1, SLC17A3, SLC17A2, TRIM38, HIST1H1A, HIST1H3A, HIST1H4A, HIST1H4B, HIST1H3B, HIST1H2AB, HIST1H2BB, HIST1H3C, HIST1H1C, HFE, HIST1H4C, HIST1H1T, HIST1H2BC, HIST1H2AC, HIST1H2BD, HIST1H2BE, HIST1H4D, HIST1H3D, HIST1H2AD, HIST1H2BF, HIST1H4E, HIST1H3G, HIST1H2BI, BTN3A2, BTN2A2, BTN3A1, BTN3A3, BTN2A1, BTN1A1, HMGN4, ABT1, ZNF322, HIST1H2BJ, HIST1H2AG, HIST1H2BK, HIST1H4I, HIST1H2AH, PRSS16, POM121L2, ZNF391, ZNF184, HIST1H2BL, HIST1H2AI, HIST1H3H, HIST1H2AJ, HIST1H2BM, HIST1H4J, HIST1H4K, HIST1H2AK, HIST1H2BN, HIST1H2AL, HIST1H1B, HIST1H3I, HIST1H4L, HIST1H3J, HIST1H2AM, HIST1H2BO, OR2B2, OR2B6, ZNF165, ZSCAN16, ZKSCAN8, ZSCAN9, ZKSCAN4, NKAPL, PGBD1, ZSCAN31, ZKSCAN3, ZSCAN12, ZSCAN23, GPX6, SCAND3, TRIM27, C6orf100, ZNF311, OR2W1, OR2B3, OR2J1, OR2J3, OR2J2, OR14J1, OR5V1, OR12D3, OR12D2, OR11A1, OR10C1, OR2H1, MAS1L, UBD, GABBR1, OR2H2	rs3117318-?	NR	7E-9		0.0168393	[0.011-0.023] unit increase	Affymetrix [25921788] (imputed)	N
593	chr6_cox_hap2	1130688	1130689	rs3131854	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p22.1		rs3131854-T	0.213	6E-18				Affymetrix [10369434] (imputed)	N
593	chr6_cox_hap2	1137756	1137757	rs188289856	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p22.1	NR	rs188289856-?	NR	6E-8		0.2325	[0.15-0.32] unit increase	Illumina [at least 560000] (imputed)	N
593	chr6_cox_hap2	1141020	1141021	rs1233367	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6p22.1	MOG	rs1233367-G	NR	3E-8		0.0181448	[0.012-0.025] unit decrease	Affymetrix [321114] (imputed)	N
593	chr6_cox_hap2	1142115	1142116	rs9468569	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p22.1	MOG, ZFP57, ZDHHC20P1	rs9468569-A	0.01203611	1E-16	(EA, Alpha-2-macroglobulin receptor-associated protein)	1.631	[1.25-2.01] unit increase	Affymetrix [509946]	N
593	chr6_cox_hap2	1142912	1142913	rs29234	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	6p22.1	Intergenic	rs29234-?	NR	2E-8		2.219	[NR]	Affymetrix [492217] (imputed)	N
593	chr6_cox_hap2	1145119	1145120	rs2252711	23284291	Hancock DB	2012-12-20	PLoS Genet	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (smoking interaction)	50,047 European ancestry individuals	NA	6p22.1	MOG	rs2252711-T	NR	4E-7	(FEV1/FVC, Ever-smoking)			NR [~ 2500000] (imputed)	N
593	chr6_cox_hap2	1145747	1145748	rs16895223	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	MOG	rs16895223-G	NR	4E-10		0.0263599	[0.018-0.035] unit decrease	Affymetrix [321016] (imputed)	N
593	chr6_cox_hap2	1146957	1146958	rs182971160	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p22.1	NR	rs182971160-?	NR	2E-7		0.3024	[0.19-0.42] unit increase	Illumina [at least 560000] (imputed)	N
593	chr6_cox_hap2	1152805	1152806	rs3130253	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p22.1	MOG	rs3130253-A		1E-44		0.053	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
593	chr6_cox_hap2	1163164	1163165	rs28367493	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p22.1		rs28367493-?	NR	2E-11		0.0217788	[0.016-0.028] unit decrease	Affymetrix [20259828] (imputed)	N
593	chr6_cox_hap2	1164395	1164396	rs75834742	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	NR	rs75834742-?	NR	6E-7		4.996	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
593	chr6_cox_hap2	1165011	1165012	rs396660	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	6p22.1	NR	rs396660-?	NR	3E-10	(MIC-A)	0.504823	[0.35-0.66] unit increase	Illumina [11901634] (imputed)	N
593	chr6_cox_hap2	1165708	1165709	rs9257953	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	91,908 East Asian ancestry individuals	NA	6p22.1		rs9257953-A	0.223075	3E-9		0.0321111	[0.022-0.043] unit increase	Illumina [13469940] (imputed)	N
593	chr6_cox_hap2	1166551	1166552	rs17369215	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	6p22.1	Intergenic	rs17369215-T	0.2278	2E-11	(MTAG)	0.0183	[0.013-0.024] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
593	chr6_cox_hap2	1166956	1166957	rs17184549	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	6p22.1	Intergenic	rs17184549-A	0.2165	1E-8	(MTAG)	0.0124	[0.0081-0.0167] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
593	chr6_cox_hap2	1166956	1166957	rs17184549	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	6p22.1	Intergenic	rs17184549-A	0.2168	4E-11	(MTAG)	0.0133	[0.0094-0.0172] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
593	chr6_cox_hap2	1168384	1168385	rs385492	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Uterine fibroids (MTAG)	5,236 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs385492-?		5E-6		1.0309278	[1.02-1.04]	Illumina [7645193] (imputed)	N
593	chr6_cox_hap2	1168384	1168385	rs385492	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p22.1	HCG4, HCG4B, HCG8, HCG9, HLA-A, HLA-F, HLA-F-AS1, HLA-G, HLA-H, HLA-J, IFITM4P, LOC554223, MOG, PPP1R11, RNF39, ZFP57, ZNRD1, ZNRD1-AS1	rs385492-T		4E-9		1.06	[1.04-1.08]	Affymetrix, Illumina [NR]	N
593	chr6_cox_hap2	1168384	1168385	rs385492	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	6p22.1	NR	rs385492-T	NR	1E-8		1.06	[NR]	Illumina [7158791] (imputed)	N
593	chr6_cox_hap2	1171036	1171037	rs3117292	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	ZFP57	rs3117292-G	NR	4E-12		0.0204333	[0.015-0.026] unit decrease	Affymetrix [321016] (imputed)	N
593	chr6_cox_hap2	1171090	1171091	rs9257985	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Gynecologic disease (multivariate analysis)	up to 7,975 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs9257985-?		2E-8	(uterine fibroid, uterine cervical cancer)			Illumina [7645193] (imputed)	N
593	chr6_cox_hap2	1179635	1179636	rs3116813	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p22.1	NR	rs3116813-A	0.1026	6E-7	(EA)	0.0553	[0.034-0.077] unit decrease	Illumina [~ 11800000] (imputed)	N
594	chr6_cox_hap2	1179770	1179771	rs3116812	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8 on Central Memory CD8+ T cell	2,910 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p22.1		rs3116812-G	0.2977	1E-8		0.1871	[0.12-0.25] unit decrease	Illumina [17945467] (imputed)	N
594	chr6_cox_hap2	1182725	1182726	rs3131888	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	1,505 Ashkenazi Jewish founder cases, 2,553 Ashkenazi Jewish founder controls	NA	6p22.1	NR	rs3131888-C	NR	7E-6		1.2820514	[NR]	Illumina [up to 9792010] (imputed)	N
594	chr6_cox_hap2	1184197	1184198	rs7764829	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p22.1		rs7764829-A	0.612	4E-25				Affymetrix [10369434] (imputed)	N
594	chr6_cox_hap2	1184547	1184548	rs9278250	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6p22.1		rs9278250-C	0.247045	7E-12		0.019422151	[0.014-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
594	chr6_cox_hap2	1187798	1187798	rs143539749	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	ZDHHC20P1	rs143539749-ATATATATTC	NR	3E-9		0.0217332	[0.015-0.029] unit decrease	Affymetrix [323858] (imputed)	N
594	chr6_cox_hap2	1187798	1187798	rs143539749	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	ZDHHC20P1	rs143539749-ATATATATTC	NR	6E-9		0.0213619	[0.014-0.029] unit decrease	Affymetrix [127266] (imputed)	N
594	chr6_cox_hap2	1187857	1187858	rs3116800	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	ZDHHC20P1	rs3116800-T	NR	2E-8		0.01833	[0.012-0.025] unit increase	Affymetrix [321016] (imputed)	N
594	chr6_cox_hap2	1189126	1189127	rs3129055	19664746	Tse KP	2009-08-05	Am J Hum Genet	Genome-wide association study reveals multiple nasopharyngeal carcinoma-associated loci within the HLA region at chromosome 6p21.3.	Nasopharyngeal carcinoma	277 Han Chinese ancestry cases, 285 Han Chinese ancestry controls	635 Han Chinese ancestry cases, 1,640 Han Chinese ancestry controls	6p22.1	HLA-F	rs3129055-G	0.31	7E-11		1.51	[1.34-1.71]	Illumina [480365]	N
594	chr6_cox_hap2	1189895	1189896	rs9258116	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p22.1		rs9258116-T	0.714	3E-9				Affymetrix [10369434] (imputed)	N
594	chr6_cox_hap2	1189932	1189933	rs113510833	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	6p22.1	HLA-F, ZFP57	rs113510833-T	0.10919500000000004	3E-8		0.028025	[0.018-0.038] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
594	chr6_cox_hap2	1190919	1190919	rs11276222	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	6p22.1	ZDHHC20P1	rs11276222-A	NR	5E-8		0.0161712	[0.01-0.022] unit increase	Affymetrix [321788] (imputed)	N
594	chr6_cox_hap2	1198862	1198863	rs1611371	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p22.1		rs1611371-C	0.228	2E-20				Affymetrix [10369434] (imputed)	N
594	chr6_cox_hap2	1204721	1204722	rs2517910	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	HLA-F	rs2517910-A	NR	3E-14		0.0214991	[0.016-0.027] unit increase	Affymetrix [321016] (imputed)	N
594	chr6_cox_hap2	1206857	1206858	rs9258183	33002439	Jin G	2020-10-01	Lancet Oncol	Genetic risk, incident gastric cancer, and healthy lifestyle: a meta-analysis of genome-wide association studies and prospective cohort study.	Gastric cancer	10,254 Han Chinese ancestry cases, 10,914 Han Chinese ancestry controls	NA	6p22.1	NR	rs9258183-A	0.47	1E-5		1.1	NR	Affymetrix, Illumina [6957974] (imputed)	N
594	chr6_cox_hap2	1207207	1207208	rs1362126	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal cancer	978 Austrian ancestry colorectal cancer cases, 636 Austrian ancestry advanced colorectal adenoma cases, 4,294 European ancestry controls	NA	6p22.1	Intergenic	rs1362126-?		1E-7		1.3338668	[NR]	Affymetrix [492217] (imputed)	N
594	chr6_cox_hap2	1207207	1207208	rs1362126	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal cancer	978 Austrian ancestry cases, 4,294 European ancestry controls	NA	6p22.1	Intergenic	rs1362126-?		3E-7		1.3908206	[NR]	Affymetrix [492217] (imputed)	N
594	chr6_cox_hap2	1208810	1208811	rs2072899	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p22.1	NR	rs2072899-?	NR	7E-18		0.1076	[0.083-0.132] unit increase	Illumina [at least 560000] (imputed)	N
594	chr6_cox_hap2	1211686	1211687	rs1628578	34050765	Zhang L	2021-05-29	J Clin Endocrinol Metab	Joint genome-wide association analyses identified 49 novel loci for age at natural menopause.	Age at menopause	181,219 European ancestry individuals, 43,861 East Asian ancestry individuals	NA	6p22.1		rs1628578-A	0.71	3E-13		0.1	unit increase	Illumina [2093892] (imputed)	N
594	chr6_cox_hap2	1211686	1211687	rs1628578	34050765	Zhang L	2021-05-29	J Clin Endocrinol Metab	Joint genome-wide association analyses identified 49 novel loci for age at natural menopause.	Age at menopause	181,219 European ancestry individuals	NA	6p22.1		rs1628578-A	0.71	2E-11		0.1	unit increase	Illumina [2398641] (imputed)	N
594	chr6_cox_hap2	1212037	1212038	rs2735059	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	6p22.1	NR	rs2735059-A	0.43	3E-13		0.0136	[0.0099-0.0173] unit decrease	NR [NR]	N
594	chr6_cox_hap2	1212840	1212841	rs885946	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	6p22.1	NR	rs885946-T	0.186879	3E-10		0.05062379	[0.035-0.066] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
594	chr6_cox_hap2	1213497	1213498	rs60581484	33574277	Kawai Y	2021-02-11	NPJ Genom Med	Mapping of susceptible variants for cold medicine-related Stevens-Johnson syndrome by whole-genome resequencing.	Cold medicine-related Stevens-Johnson syndrome/toxic epidermal necrolysis (SJS/TEN) with severe ocular complications	133 Japanese ancestry cases, 418 Japanese ancestry controls	NA	6p22.1		rs60581484-A	0.218	2E-13		4.204		Illumina [7608150]	N
594	chr6_cox_hap2	1216350	1216351	rs1610601	30552173	Aterido A	2018-12-14	Ann Rheum Dis	Genetic variation at the glycosaminoglycan metabolism pathway contributes to the risk of psoriatic arthritis but not psoriasis.	Psoriatic arthritis	744 Spanish ancestry cases, 1,454 Spanish ancestry controls	1,430 cases, 1,417 controls	6p22.1	NR	rs1610601-?	NR	6E-9		5.81	[NR] z-score increase	Illumina [1387382] (imputed)	N
594	chr6_cox_hap2	1216782	1216783	rs2735054	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p22.1	NR	rs2735054-G	0.413	3E-11	(IFNAR2_of_CD20p)			Illumina [5084123] (imputed)	N
594	chr6_cox_hap2	1221837	1221838	rs2523393	19525953	De Jager PL	2009-06-14	Nat Genet	Meta-analysis of genome scans and replication identify CD6, IRF8 and TNFRSF1A as new multiple sclerosis susceptibility loci.	Multiple sclerosis	2,624 European ancestry cases, 7,220 European ancestry controls	2,215 European ancestry cases, 2,116 European ancestry controls	6p22.1	HLA-B	rs2523393-A	0.59	1E-17		1.28	[1.18-1.39]	Affymetrix, Illumina [~ 2560000] (imputed)	N
594	chr6_cox_hap2	1223445	1223446	rs1633096	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	HLA-F-AS1	rs1633096-T	NR	2E-10		0.0225267	[0.016-0.029] unit decrease	Affymetrix [323858] (imputed)	N
594	chr6_cox_hap2	1223445	1223446	rs1633096	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	HLA-F-AS1	rs1633096-T	NR	3E-10		0.0224137	[0.015-0.029] unit decrease	Affymetrix [127266] (imputed)	N
594	chr6_cox_hap2	1223445	1223446	rs1633096	29196614	Sud A	2017-12-01	Nat Commun	Genome-wide association study of classical Hodgkin lymphoma identifies key regulators of disease susceptibility.	Mixed cellularity Hodgkin lymphoma	828 European ancestry cases, 14,315 European ancestry controls	135 cases, 3,069 controls	6p22.1	HLA-F	rs1633096-?	NR	3E-23		1.79	[1.59-2.00]	Illumina [> 10000000] (imputed)	N
594	chr6_cox_hap2	1225082	1225083	rs374787445	31577861	Dai J	2019-10-31	Int J Cancer	Genome-wide association study of INDELs identified four novel susceptibility loci associated with lung cancer risk.	Lung cancer	20,871 European ancestry cases, 15,971 European ancestry controls, 2,331 Chinese ancestry cases, 3,077 Chinese ancestry controls	NA	6p22.1	HLA-F, AS1	rs374787445-D	0.18	7E-9		1.11	[1.07-1.15]	Illumina [484196]	N
594	chr6_cox_hap2	1228429	1228430	rs9258224	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	HLA-F-AS1, MICE	rs9258224-A	NR	2E-8		0.0282221	[0.018-0.038] unit decrease	Affymetrix [321016] (imputed)	N
594	chr6_cox_hap2	1239325	1239326	rs9258260	22412388	Kenny EE	2012-03-08	PLoS Genet	A genome-wide scan of Ashkenazi Jewish Crohn's disease suggests novel susceptibility loci.	Crohn's disease	737 Ashkenazi Jewish cases, 2,257  Ashkenazi Jewish controls	971 Ashkenazi Jewish cases, 2,124 Ashkenazi Jewish controls	6p22.1	UBD, HLA-A, HLA-G, HLA-F, MOG, GABBR1, HLA-H	rs9258260-T	0.104	2E-10		1.45	[1.21-1.68]	Affymetrix, Illumina [1060934] (imputed)	N
594	chr6_cox_hap2	1242157	1242158	rs1633063	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Sleep duration	384,317 European ancestry individuals	NA	6p22.1		rs1633063-T	0.246	3E-9		0.01681	[0.011-0.022] unit decrease	Affymetrix, Illumina [10862567] (imputed)	N
594	chr6_cox_hap2	1246291	1246292	rs1610633	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p22.1		rs1610633-G	0.752	5E-94				Affymetrix [10369434] (imputed)	N
594	chr6_cox_hap2	1246954	1246955	rs1611284	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p22.1	XXbac-BPG170G13.31	rs1611284-G	NR	2E-9		0.0170381	[0.011-0.023] unit decrease	Affymetrix [319769] (imputed)	N
594	chr6_cox_hap2	1246954	1246955	rs1611284	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p22.1	XXbac-BPG170G13.31	rs1611284-G	NR	2E-8		0.015981	[0.01-0.022] unit decrease	Affymetrix [319769] (imputed)	N
594	chr6_cox_hap2	1248701	1248702	rs1737062	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p22.1		rs1737062-C	0.472	8E-23				Affymetrix [10369434] (imputed)	N
594	chr6_cox_hap2	1251029	1251030	rs35794939	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antithrombotic agents)	67,653 European ancestry cases, 85,986 European ancestry controls, 54,220 East Asian ancestry cases, 124,506 East Asian ancestry controls	NA	6p22.1		rs35794939-G	NR	2E-11		0.086	[0.061-0.111] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
594	chr6_cox_hap2	1251648	1251649	rs115635848	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	XXbac-BPG170G13.31	rs115635848-A	NR	9E-11		0.0221196	[0.015-0.029] unit decrease	Affymetrix [323858] (imputed)	N
594	chr6_cox_hap2	1251648	1251649	rs115635848	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	XXbac-BPG170G13.31	rs115635848-A	NR	8E-11		0.0222067	[0.016-0.029] unit decrease	Affymetrix [127266] (imputed)	N
594	chr6_cox_hap2	1251895	1251896	rs28986310	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	6p22.1	NR	rs28986310-T	0.0618266	2E-8		5.66	z score increase	NR [10847151] (imputed)	N
594	chr6_cox_hap2	1251895	1251896	rs28986310	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	6p22.1	intergenic	rs28986310-T	0.061827	1E-7		5.292	z score increase	Illumina [18485882] (imputed)	N
594	chr6_cox_hap2	1253661	1253662	rs1737030	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mononucleosis	17,457 European ancestry cases, 68,446 European ancestry controls	NA	6p22.1	NR	rs1737030-?	NR	8E-7		0.0636	[0.038-0.089] unit decrease	Illumina [at least 560000] (imputed)	N
594	chr6_cox_hap2	1254786	1254787	rs1815741	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Non-small cell lung cancer	27,120 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	6p22.1	NR	rs1815741-C	0.92	3E-7		0.86	[0.81-0.91]	NR [NR] (imputed)	N
594	chr6_cox_hap2	1254786	1254787	rs1815741	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Lung adenocarcinoma	15,581 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	6p22.1	NR	rs1815741-C	0.92	2E-7		0.84	[0.78-0.89]	NR [NR] (imputed)	N
594	chr6_cox_hap2	1255096	1255097	rs3888722	30169916	Sun Y	2018-08-31	J Eur Acad Dermatol Venereol	Investigation of the Predisposing Factor of Pemphigus and its clinical subtype through a Genome-wide association and next generation sequence analysis.	Pemphigus foliaceus	65 Chinese ancestry cases, 844 Chinese ancestry controls	at least 49 Chinese ancestry cases, up to 996 Chinese ancestry controls	6p22.1	NR	rs3888722-?	NR	7E-9		2.74		Illumina [5546030] (imputed)	N
594	chr6_cox_hap2	1263847	1263848	rs116603789	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p22.1	NR	rs116603789-?	NR	1E-6		0.2936	[0.17-0.41] unit increase	Illumina [at least 560000] (imputed)	N
594	chr6_cox_hap2	1264802	1264803	rs1611236	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p22.1		rs1611236-A	0.678	4E-29				Affymetrix [10369434] (imputed)	N
594	chr6_cox_hap2	1264802	1264803	rs1611236	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p22.1		rs1611236-A	0.678	6E-22				Affymetrix [10369434] (imputed)	N
594	chr6_cox_hap2	1264802	1264803	rs1611236	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p22.1		rs1611236-A	0.678	7E-31				Affymetrix [10369434] (imputed)	N
594	chr6_cox_hap2	1264802	1264803	rs1611236	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p22.1		rs1611236-A	0.678	4E-48				Affymetrix [10369434] (imputed)	N
594	chr6_cox_hap2	1264802	1264803	rs1611236	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p22.1		rs1611236-A	0.678	8E-38				Affymetrix [10369434] (imputed)	N
594	chr6_cox_hap2	1264802	1264803	rs1611236	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p22.1		rs1611236-A	0.678	1E-16				Affymetrix [10369434] (imputed)	N
594	chr6_cox_hap2	1267241	1267242	rs9258357	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p22.1		rs9258357-T	0.163	4E-16				Affymetrix [10369434] (imputed)	N
594	chr6_cox_hap2	1267241	1267242	rs9258357	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	6p22.1		rs9258357-T	0.163	3E-15				Affymetrix [10369434] (imputed)	N
594	chr6_cox_hap2	1267241	1267242	rs9258357	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p22.1		rs9258357-T	0.163	3E-10				Affymetrix [10369434] (imputed)	N
594	chr6_cox_hap2	1268920	1268921	rs9258375	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p22.1	NR	rs9258375-G	0.122	1E-12		0.0131	[0.0094-0.0168] unit decrease	NR [7666894] (imputed)	N
594	chr6_cox_hap2	1268920	1268921	rs9258375	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA	6p22.1	NR	rs9258375-?	NR	8E-6		0.0571	[0.032-0.082] unit decrease	Illumina [at least 560000] (imputed)	N
594	chr6_cox_hap2	1270506	1270507	rs114802991	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	6p22.1	HLA-G	rs114802991-G	0.993211	8E-9		0.072933	[0.048-0.098] unit decrease	Affymetrix [NR] (imputed)	N
594	chr6_cox_hap2	1275985	1275986	rs1611207	32752121	Nedoszytko B	2020-07-31	Int J Mol Sci	Results from a Genome-Wide Association Study (GWAS) in Mastocytosis Reveal New Gene Polymorphisms Associated with WHO Subgroups.	Mastocytosis	234 European ancestry cases, 5,606 European ancestry controls	NA	6p22.1	HLA-V	rs1611207-A	0.3807	3E-13		2.105	[1.9-2.31]	Illumina [281811]	N
594	chr6_cox_hap2	1275985	1275986	rs1611207	32752121	Nedoszytko B	2020-07-31	Int J Mol Sci	Results from a Genome-Wide Association Study (GWAS) in Mastocytosis Reveal New Gene Polymorphisms Associated with WHO Subgroups.	Cutaneous mastocytosis	141 European ancestry cases, 5,606 European ancestry controls	NA	6p22.1	HLA-V	rs1611207-A	0.3807	1E-8		2.01	[-18.0604-22.0804]	Illumina [281811]	N
594	chr6_cox_hap2	1276138	1276139	rs45479291	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	229 European ancestry cases, 1,088 European ancestry controls	NA	6p22.1	HLA-V	rs45479291-?	NR	2E-16	(conditional on rs12524487and rs62392216)			Illumina [4388215] (imputed)	N
594	chr6_cox_hap2	1278994	1278995	rs1737002	32771030	Tangtanatakul P	2020-08-08	Arthritis Res Ther	Meta-analysis of genome-wide association study identifies FBN2 as a novel locus associated with systemic lupus erythematosus in Thai population.	Systemic lupus erythematosus	487 Thai cases, 1,606 Thai controls	405 Thai cases, 1,590 Thai controls	6p22.1	HLA-V	rs1737002-A	0.08	2E-6		1.6334	[NR]	Illumina [421909] (imputed)	N
594	chr6_cox_hap2	1280351	1280352	rs1633005	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p22.1	HCG4, HLA-G	rs1633005-A	0.282	7E-16				Illumina [118177]	N
594	chr6_cox_hap2	1280966	1280967	rs2523414	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	6p22.1	NR	rs2523414-?	NR	6E-14		7.508	NR z score increase	Illumina [at least 830937] (imputed)	N
594	chr6_cox_hap2	1284248	1284249	rs1611185	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	HLA-P	rs1611185-C	NR	2E-9		0.0171984	[0.012-0.023] unit decrease	Affymetrix [321016] (imputed)	N
594	chr6_cox_hap2	1287521	1287522	rs1610660	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	6p22.1	RPL7AP7	rs1610660-G	0.19782	5E-16		0.036476128	[0.028-0.045] unit decrease	Affymetrix [93095623] (imputed)	N
594	chr6_cox_hap2	1293575	1293576	rs9380141	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p22.1	HCG4, HLA-G	rs9380141-C	0.29	1E-6	(EA)	1.94	[1.48-2.55]	Illumina [up to 547389]	N
594	chr6_cox_hap2	1296947	1296948	rs1611182	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	6p22.1	MICG	rs1611182-T	NR	4E-9		0.017276	[0.012-0.023] unit increase	Affymetrix [321788] (imputed)	N
594	chr6_cox_hap2	1297947	1297948	rs1610707	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	6p22.1	MICG	rs1610707-A	0.359635	1E-13		0.02435493	[0.018-0.031] unit increase	Affymetrix [93095623] (imputed)	N
594	chr6_cox_hap2	1302665	1302666	rs56221809	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	6p22.1		rs56221809-G	0.863227	8E-9		0.033593	[0.022-0.045] unit decrease	NR [11722792] (imputed)	N
594	chr6_cox_hap2	1304846	1304847	rs201604542	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p22.1		rs201604542-?	NR	6E-13		0.105892	[0.076-0.135] unit increase	Affymetrix [20259828] (imputed)	N
595	chr6_cox_hap2	1312575	1312576	rs1632941	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	6p22.1	NR	rs1632941-C	0.46	7E-10	(Conditioned on chr6:28129789)	0.015807396	[0.011-0.021] unit decrease	NR [~ 10000000] (imputed)	N
595	chr6_cox_hap2	1312933	1312934	rs145023077	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs145023077-?		7E-8		1.06	[1.04-1.09]	Illumina [7645193] (imputed)	N
595	chr6_cox_hap2	1312933	1312934	rs145023077	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs145023077-?		8E-9		1.83	[1.49-2.25]	Illumina [7645193] (imputed)	N
595	chr6_cox_hap2	1314698	1314699	rs9380142	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	6p22.1	HLA-G	rs9380142-G	0.310253	5E-11		0.0409033	[0.029-0.053] unit decrease	Affymetrix [93095623] (imputed)	N
595	chr6_cox_hap2	1315186	1315187	rs1611141	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	6p22.1	HCG4P8	rs1611141-G	0.499184	2E-24		0.031040031	[0.025-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
595	chr6_cox_hap2	1316128	1316129	rs12662618	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	6p22.1	HCG4P8	rs12662618-C	0.1014	5E-15		0.04632551	[0.035-0.058] unit increase	Affymetrix [~ 2500000] (imputed)	N
595	chr6_cox_hap2	1316128	1316129	rs12662618	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	6p22.1	HCG4P8	rs12662618-C	0.1014	5E-16		0.04778197	[0.036-0.059] unit decrease	Affymetrix [~ 2500000] (imputed)	N
595	chr6_cox_hap2	1316128	1316129	rs12662618	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	6p22.1	HCG4P8	rs12662618-C	0.1015	1E-17		0.05062162	[0.039-0.062] unit decrease	Affymetrix [~ 2500000] (imputed)	N
595	chr6_cox_hap2	1318607	1318608	rs9380145	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p22.1	NR	rs9380145-C	0.361	2E-21	(IFNAR2_of_CD20p)			Illumina [5084123] (imputed)	N
595	chr6_cox_hap2	1322814	1322815	rs407238	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p22.1	HLA-G	rs407238-C	NR	4E-9		0.0168935	[0.011-0.023] unit decrease	Affymetrix [319769] (imputed)	N
595	chr6_cox_hap2	1322814	1322815	rs407238	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p22.1	HLA-G	rs407238-C	NR	2E-8		0.0162062	[0.011-0.022] unit decrease	Affymetrix [319769] (imputed)	N
595	chr6_cox_hap2	1322814	1322815	rs407238	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	HLA-G	rs407238-C	NR	7E-12		0.0196596	[0.014-0.025] unit increase	Affymetrix [321016] (imputed)	N
595	chr6_cox_hap2	1322814	1322815	rs407238	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	23,963 European ancestry cases, 306,942 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	43,254 European ancestry cases, 1,471,118 European ancestry controls	6p22.1	HLA-G	rs407238-C	NR	4E-6		0.0336	unit decrease	Illumina [15409056] (imputed)	N
595	chr6_cox_hap2	1323306	1323307	rs2517887	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	6p22.1	HLA-G	rs2517887-G	0.793716	2E-9		0.0146864	[0.0099-0.0195] unit decrease	Affymetrix [NR] (imputed)	N
595	chr6_cox_hap2	1325698	1325700	rs34590927	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	6p22.1	NR	rs34590927-?	NR	4E-7		0.062	[0.038-0.086] unit decrease	Illumina [at least 560000] (imputed)	N
595	chr6_cox_hap2	1325698	1325700	rs34590927	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	6p22.1	HLA-G, HLA-H	rs34590927-?	NR	4E-7		1.0638298	[1.04-1.09]	Illumina [13754664] (imputed)	N
595	chr6_cox_hap2	1325771	1325772	rs1476570	30529582	Lu Y	2018-12-06	Gastroenterology	Large-scale Genome-wide Association Study of East Asians Identifies Loci Associated With Risk for Colorectal Cancer.	Colorectal cancer	22,775 East Asian ancestry cases, 47,731 East Asian ancestry controls	NA	6p22.1	HLA-G	rs1476570-A	0.376	7E-9		1.12	[1.08-1.16]	Affymetrix, Illumina [up to 10700000] (imputed)	N
595	chr6_cox_hap2	1328807	1328808	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small LDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	1E-8		0.0338512	[0.022-0.046] unit decrease	NR [11722792] (imputed)	N
595	chr6_cox_hap2	1328807	1328808	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium LDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	4E-8		0.0327944	[0.021-0.044] unit decrease	NR [11722792] (imputed)	N
595	chr6_cox_hap2	1328807	1328808	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large LDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	3E-10		0.0370981	[0.026-0.049] unit decrease	NR [11722792] (imputed)	N
595	chr6_cox_hap2	1328807	1328808	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in LDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	1E-9		0.0361295	[0.024-0.048] unit decrease	NR [11722792] (imputed)	N
595	chr6_cox_hap2	1328807	1328808	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in IDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	2E-9		0.0345436	[0.023-0.046] unit decrease	NR [11722792] (imputed)	N
595	chr6_cox_hap2	1328807	1328808	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol minus HDL-C levels	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	5E-10		0.0368197	[0.025-0.048] unit decrease	NR [11722792] (imputed)	N
595	chr6_cox_hap2	1328807	1328808	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Remnant cholesterol (non-HDL, non-LDL -cholesterol)	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	3E-9		0.0352589	[0.024-0.047] unit decrease	NR [11722792] (imputed)	N
595	chr6_cox_hap2	1328807	1328808	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium LDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	1E-8		0.0342027	[0.023-0.046] unit decrease	NR [11722792] (imputed)	N
595	chr6_cox_hap2	1328807	1328808	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large LDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	4E-10		0.0369858	[0.025-0.049] unit decrease	NR [11722792] (imputed)	N
595	chr6_cox_hap2	1328807	1328808	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in LDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	9E-10		0.036396	[0.025-0.048] unit decrease	NR [11722792] (imputed)	N
595	chr6_cox_hap2	1328807	1328808	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in IDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	3E-10		0.0361572	[0.025-0.047] unit decrease	NR [11722792] (imputed)	N
595	chr6_cox_hap2	1328807	1328808	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	LDL cholesterol levels	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	4E-10		0.0370623	[0.025-0.049] unit decrease	NR [11722792] (imputed)	N
595	chr6_cox_hap2	1328807	1328808	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	5E-9		0.0347629	[0.023-0.046] unit decrease	NR [11722792] (imputed)	N
595	chr6_cox_hap2	1328807	1328808	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	1E-8		0.0339143	[0.022-0.046] unit decrease	NR [11722792] (imputed)	N
595	chr6_cox_hap2	1328807	1328808	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	4E-10		0.0372639	[0.026-0.049] unit decrease	NR [11722792] (imputed)	N
595	chr6_cox_hap2	1328807	1328808	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large LDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	1E-10		0.0378589	[0.026-0.049] unit decrease	NR [11722792] (imputed)	N
595	chr6_cox_hap2	1328807	1328808	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in LDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	1E-10		0.0379624	[0.026-0.05] unit decrease	NR [11722792] (imputed)	N
595	chr6_cox_hap2	1328807	1328808	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small LDL particles	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	3E-8		0.0330855	[0.021-0.045] unit decrease	NR [11722792] (imputed)	N
595	chr6_cox_hap2	1328807	1328808	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large LDL particles	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	7E-11		0.038717	[0.027-0.05] unit decrease	NR [11722792] (imputed)	N
595	chr6_cox_hap2	1328807	1328808	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of LDL particles	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	5E-10		0.0371209	[0.025-0.049] unit decrease	NR [11722792] (imputed)	N
595	chr6_cox_hap2	1328807	1328808	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Clinical LDL cholesterol levels	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	2E-10		0.0378905	[0.026-0.05] unit decrease	NR [11722792] (imputed)	N
595	chr6_cox_hap2	1328807	1328808	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small LDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	2E-8		0.033257	[0.022-0.045] unit decrease	NR [11722792] (imputed)	N
595	chr6_cox_hap2	1328807	1328808	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium VLDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	1E-11		0.0401155	[0.029-0.052] unit decrease	NR [11722792] (imputed)	N
595	chr6_cox_hap2	1328807	1328808	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large LDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	2E-10		0.0376083	[0.026-0.049] unit decrease	NR [11722792] (imputed)	N
595	chr6_cox_hap2	1328807	1328808	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in VLDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	4E-8		0.0327951	[0.021-0.044] unit decrease	NR [11722792] (imputed)	N
595	chr6_cox_hap2	1328807	1328808	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in LDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	1E-9		0.0361619	[0.025-0.048] unit decrease	NR [11722792] (imputed)	N
595	chr6_cox_hap2	1328807	1328808	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in IDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	3E-9		0.0342481	[0.023-0.046] unit decrease	NR [11722792] (imputed)	N
595	chr6_cox_hap2	1328807	1328808	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	1E-8		0.0330288	[0.022-0.044] unit decrease	NR [11722792] (imputed)	N
595	chr6_cox_hap2	1328807	1328808	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small LDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	4E-9		0.0352069	[0.024-0.047] unit decrease	NR [11722792] (imputed)	N
595	chr6_cox_hap2	1328807	1328808	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	8E-11		0.0386497	[0.027-0.05] unit decrease	NR [11722792] (imputed)	N
595	chr6_cox_hap2	1328807	1328808	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	2E-8		0.0333427	[0.022-0.045] unit decrease	NR [11722792] (imputed)	N
595	chr6_cox_hap2	1328807	1328808	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large LDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	1E-10		0.0379659	[0.026-0.05] unit decrease	NR [11722792] (imputed)	N
595	chr6_cox_hap2	1328807	1328808	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in IDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	2E-9		0.0344785	[0.023-0.046] unit decrease	NR [11722792] (imputed)	N
595	chr6_cox_hap2	1328807	1328808	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein B levels	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	9E-10		0.0364076	[0.025-0.048] unit decrease	NR [11722792] (imputed)	N
595	chr6_cox_hap2	1335812	1335813	rs2394186	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	6p22.1	NR	rs2394186-G	0.2192	2E-8		0.0271	[0.018-0.037] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
595	chr6_cox_hap2	1335933	1335934	rs28724990	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total free cholesterol levels	115,082 European ancestry individuals	NA	6p22.1		rs28724990-T	0.844316	4E-9		0.0325566	[0.022-0.043] unit decrease	NR [11722792] (imputed)	N
595	chr6_cox_hap2	1335933	1335934	rs28724990	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total esterified cholesterol levels	115,082 European ancestry individuals	NA	6p22.1		rs28724990-T	0.844316	2E-8		0.0309173	[0.02-0.042] unit decrease	NR [11722792] (imputed)	N
595	chr6_cox_hap2	1335933	1335934	rs28724990	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol levels	115,082 European ancestry individuals	NA	6p22.1		rs28724990-T	0.844316	1E-8		0.031549	[0.021-0.042] unit decrease	NR [11722792] (imputed)	N
595	chr6_cox_hap2	1337558	1337559	rs28728979	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	MICF	rs28728979-A	NR	3E-8		0.0362437	[0.023-0.049] unit decrease	Affymetrix [321016] (imputed)	N
595	chr6_cox_hap2	1338117	1338118	rs2523761	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	NR	rs2523761-?	NR	6E-8		5.432	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
595	chr6_cox_hap2	1338990	1338991	rs9258593	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6p22.1		rs9258593-?	NR	9E-6		1.05543	[1.03-1.08]	NR [685523]	N
595	chr6_cox_hap2	1340742	1340743	rs17179234	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MRPL55	5,367 Icelandic ancestry individuals	NA	6p22.1		rs17179234-A	0.1077	3E-55		0.466688	[0.41-0.53] unit increase	Illumina [7506463] (imputed)	N
595	chr6_cox_hap2	1341008	1341009	rs17185657	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	6p22.1	MICF	rs17185657-T	0.076717	2E-15		0.032850858	[0.025-0.041] unit increase	Affymetrix [93095623] (imputed)	N
595	chr6_cox_hap2	1341481	1341482	rs9258644	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p22.1		rs9258644-?	NR	3E-17		0.0268138	[0.021-0.033] unit decrease	Affymetrix [20259828] (imputed)	N
595	chr6_cox_hap2	1341831	1341832	rs58005484	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	6p22.1	MICF	rs58005484-T	0.140864	8E-28		0.035311565	[0.029-0.042] unit increase	Affymetrix [93095623] (imputed)	N
595	chr6_cox_hap2	1341831	1341832	rs58005484	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	6p22.1	MICF	rs58005484-T	0.140853	1E-24		0.033428524	[0.027-0.04] unit decrease	Affymetrix [93095623] (imputed)	N
595	chr6_cox_hap2	1341831	1341832	rs58005484	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	6p22.1	MICF	rs58005484-T	0.1409	2E-20		0.04769708	[0.038-0.058] unit increase	Affymetrix [~ 2500000] (imputed)	N
595	chr6_cox_hap2	1348041	1348042	rs2523822	21570397	Lucena MI	2011-04-12	Gastroenterology	Susceptibility to amoxicillin-clavulanate-induced liver injury is influenced by multiple HLA class I and II alleles.	Drug-induced liver injury (amoxicillin-clavulanate)	201 European ancestry cases, 532 European ancestry controls	NA	6p22.1	HLA-A	rs2523822-?	NR	2E-10		2.3	[1.80-2.90]	Illumina [822927]	N
595	chr6_cox_hap2	1348353	1348354	rs9258750	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6p22.1		rs9258750-G	0.176259	2E-14		0.023563657	[0.018-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
595	chr6_cox_hap2	1348629	1348630	rs1611713	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p22.1		rs1611713-A	0.712	2E-64				Affymetrix [10369434] (imputed)	N
595	chr6_cox_hap2	1349014	1349015	rs1611719	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	6p22.1	HLA-G	rs1611719-G	0.79027	5E-13		0.0174799	[0.013-0.022] unit increase	Affymetrix [NR] (imputed)	N
595	chr6_cox_hap2	1349014	1349015	rs1611719	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	6p22.1	HLA-G	rs1611719-G	0.790195	1E-14		0.019154	[0.014-0.024] unit increase	Affymetrix [NR] (imputed)	N
595	chr6_cox_hap2	1351714	1351715	rs2524035	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	6p22.1	intergenic	rs2524035-G	0.8188	3E-23		0.04626543	[0.037-0.055] unit decrease	Affymetrix [~ 2500000] (imputed)	N
595	chr6_cox_hap2	1352077	1352078	rs1611747	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small LDL	115,082 European ancestry individuals	NA	6p22.1		rs1611747-T	0.604397	4E-10		0.0262493	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
595	chr6_cox_hap2	1352077	1352078	rs1611747	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p22.1		rs1611747-T	0.604	9E-22				Affymetrix [10369434] (imputed)	N
595	chr6_cox_hap2	1352227	1352228	rs2517827	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	MICF	rs2517827-A	NR	2E-10		0.0215463	[0.015-0.028] unit decrease	Affymetrix [323858] (imputed)	N
595	chr6_cox_hap2	1352227	1352228	rs2517827	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	MICF	rs2517827-A	NR	8E-11		0.0219247	[0.015-0.029] unit decrease	Affymetrix [127266] (imputed)	N
595	chr6_cox_hap2	1352373	1352374	rs34832458	31577861	Dai J	2019-10-31	Int J Cancer	Genome-wide association study of INDELs identified four novel susceptibility loci associated with lung cancer risk.	Lung cancer	20,871 European ancestry cases, 15,971 European ancestry controls, 2,331 Chinese ancestry cases, 3,077 Chinese ancestry controls	NA	6p22.1	HLA-G	rs34832458-T	0.39	1E-9		0.92	[0.89-0.94]	Illumina [484196]	N
595	chr6_cox_hap2	1352438	1352439	rs3128900	33269293	Kannambath S	2020-10-16	Open Forum Infect Dis	Genome-Wide Association Study Identifies Novel Colony Stimulating Factor 1 Locus Conferring Susceptibility to Cryptococcosis in Human Immunodeficiency Virus-Infected South Africans.	Cryptococcosis in HIV infection	319 South African ancestry cases, 399 South African ancestry controls	NA	6p22.1	HLA-H	rs3128900-?	NR	5E-6		0.9658	[NR]	Illumina [2686126] (imputed)	N
595	chr6_cox_hap2	1352438	1352439	rs3128900	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6p22.1		rs3128900-T	0.845434	2E-21		0.032471824	[0.026-0.039] unit decrease	Affymetrix [93095623] (imputed)	N
595	chr6_cox_hap2	1352853	1352854	rs7760545	33574277	Kawai Y	2021-02-11	NPJ Genom Med	Mapping of susceptible variants for cold medicine-related Stevens-Johnson syndrome by whole-genome resequencing.	Cold medicine-related Stevens-Johnson syndrome/toxic epidermal necrolysis (SJS/TEN) with severe ocular complications	133 Japanese ancestry cases, 418 Japanese ancestry controls	NA	6p22.1		rs7760545-A	0.2594	4E-16		4.373		Illumina [7608150]	N
595	chr6_cox_hap2	1356118	1356119	rs1611637	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	IgM levels	14,442 Icelandic ancestry individuals	2,157 Swedish ancestry individuals	6p22.1	HLA-G	rs1611637-A	0.4554	1E-21		0.11	NR SD units increase	Illumina [21568490] (imputed)	N
595	chr6_cox_hap2	1356884	1356885	rs885932	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p22.1	NR	rs885932-A	0.190644	2E-12		0.026577342	[0.019-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
595	chr6_cox_hap2	1359619	1359620	rs2523815	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p22.1	HLA-A	rs2523815-A	0.64	2E-22		1.12	[1.11-1.14]	Illumina [at least 560000] (imputed)	N
595	chr6_cox_hap2	1360114	1360115	rs3132713	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	6p22.1		rs3132713-A	0.181	2E-27				Affymetrix [10369434] (imputed)	N
595	chr6_cox_hap2	1360591	1360592	rs56213322	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	6p22.1		rs56213322-A	0.819527	5E-23		0.029193865	[0.023-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
595	chr6_cox_hap2	1361916	1361917	rs2734963	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Oral cavity and pharyngeal cancer	1,223 European ancestry cases, 410,350 European ancestry controls	NA	6p22.1		rs2734963-T	0.193283	6E-7		1.2753475	NR	Affymetrix [7846216] (imputed)	N
595	chr6_cox_hap2	1363345	1363346	rs2523809	22075330	Granada M	2011-11-08	J Allergy Clin Immunol	A genome-wide association study of plasma total IgE concentrations in the Framingham Heart Study.	IgE levels	6,819 European ancestry individuals	7,809 European ancestry indivduals	6p22.1	HLA-G	rs2523809-T	NR	4E-8		0.06	[NR] unit increase	Affymetrix [2540223] (imputed)	N
595	chr6_cox_hap2	1364460	1364461	rs1611579	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6p22.1	HLA-H	rs1611579-C	0.122264	4E-17		0.051560964	[0.04-0.064] unit increase	Affymetrix [93095623] (imputed)	N
595	chr6_cox_hap2	1364460	1364461	rs1611579	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p22.1	NR	rs1611579-C	0.098	8E-7	(EA)	0.058	[0.035-0.081] unit decrease	Illumina [~ 11800000] (imputed)	N
595	chr6_cox_hap2	1367182	1367183	rs2523802	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	6p22.1	NR	rs2523802-?	NR	2E-8		0.088	[0.057-0.119] unit decrease	Illumina [at least 560000] (imputed)	N
595	chr6_cox_hap2	1368314	1368315	rs2734950	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	6p22.1	HLA-H	rs2734950-T	0.402539	6E-12		0.01625928	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
595	chr6_cox_hap2	1369591	1369592	rs2734947	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hypothyroidism	1,114 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	6p22.1		rs2734947-C	0.497362317	4E-13		0.35440555	[0.26-0.45] unit increase	Illumina [13429045] (imputed)	N
595	chr6_cox_hap2	1386130	1386131	rs189370103	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	6p22.1	NR	rs189370103-?	NR	8E-6	(Native Hawaiian)	1.0607	[NR] unit increase	Illumina [up to 11892802] (imputed)	N
595	chr6_cox_hap2	1389702	1389703	rs2517873	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Squamous cell lung carcinoma	8,350 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	6p22.1	NR	rs2517873-A	NR	2E-10		1.23	[1.15-1.31]	NR [NR] (imputed)	N
595	chr6_cox_hap2	1389702	1389703	rs2517873	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Non-small cell lung cancer	27,120 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	6p22.1	NR	rs2517873-A	NR	5E-11		1.16	[1.11-1.21]	NR [NR] (imputed)	N
595	chr6_cox_hap2	1389702	1389703	rs2517873	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Lung adenocarcinoma	15,581 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	6p22.1	NR	rs2517873-A	NR	3E-6		1.13	[1.08-1.20]	NR [NR] (imputed)	N
595	chr6_cox_hap2	1389702	1389703	rs2517873	31326317	Dai J	2019-07-17	Lancet Respir Med	Identification of risk loci and a polygenic risk score for lung cancer: a large-scale prospective cohort study in Chinese populations.	Non-small cell lung cancer	13,327 Chinese ancestry cases, 13,793 European ancestry cases, 13,328 Chinese ancestry controls, 14,027 European ancestry controls	NA	6p22.1	MHC	rs2517873-A	0.145	5E-11		1.16	[1.11-1.21]	Illumina [~ 11000000] (imputed)	N
595	chr6_cox_hap2	1402964	1402965	rs75460055	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p22.1	NR	rs75460055-T	0.039	5E-18	(conditional)	0.47	[0.3-0.64]	Illumina [11270530] (imputed)	N
595	chr6_cox_hap2	1404467	1404468	rs1611399	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	HCG4B	rs1611399-C	NR	5E-8		0.0192493	[0.012-0.026] unit decrease	Affymetrix [323858] (imputed)	N
595	chr6_cox_hap2	1404467	1404468	rs1611399	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	HCG4B	rs1611399-C	NR	4E-8		0.0194622	[0.013-0.026] unit decrease	Affymetrix [127266] (imputed)	N
595	chr6_cox_hap2	1407292	1407293	rs9259819	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	6p22.1	HLA-J	rs9259819-G	0.5	2E-9		1.036	[1.02-1.05]	Affymetrix, Illumina [8307659] (imputed)	N
595	chr6_cox_hap2	1410813	1410814	rs389725	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	6p22.1	HCG4B, HLA-U	rs389725-T	0.78328	3E-30		0.03487705	[0.029-0.041] unit decrease	Affymetrix [93095623] (imputed)	N
595	chr6_cox_hap2	1411800	1411801	rs2975009	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	6p22.1	HCG4B, HLA-U	rs2975009-T	0.4651	7E-24		0.0380916	[0.031-0.046] unit increase	Affymetrix [~ 2500000] (imputed)	N
595	chr6_cox_hap2	1413310	1413311	rs2471863	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p22.1	HLA-A	rs2471863-C	0.526	8E-7		0.057	[0.033-0.081] unit increase	Affymetrix, Illumina [7374092] (imputed)	N
595	chr6_cox_hap2	1413360	1413361	rs2524005	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Varicose veins	22,037 European ancestry cases, 437,665 European ancestry controls, 474 East Asian ancestry cases, 178,252 East Asian ancestry controls	NA	6p22.1		rs2524005-A	NR	1E-12		0.0995	[0.072-0.127] unit decrease	Affymetrix, Illumina [25842955] (imputed)	N
595	chr6_cox_hap2	1413360	1413361	rs2524005	22688191	Bergen SE	2012-06-12	Mol Psychiatry	Genome-wide association study in a Swedish population yields support for greater CNV and MHC involvement in schizophrenia compared with bipolar disorder.	Bipolar disorder and schizophrenia	2,111 European ancestry schizophrenia cases, 836 European ancestry bipolar disorder cases, 2,535 European ancestry controls	NA	6p22.1	other genes, MHC	rs2524005-?	NR	5E-7		1.32	[NR]	Affymetrix [745006]	N
595	chr6_cox_hap2	1414335	1414336	rs72498354	32339537	Roberts V	2020-04-24	J Invest Dermatol	Genome wide association study identifies genetic associations with perceived age.	Youthful appearance (self-reported)	423,992 European ancestry individuals	NA	6p22.1	HLA-A	rs72498354-C	0.960927	4E-9		0.933287	NR	Affymetrix [~ 9600000] (imputed)	N
595	chr6_cox_hap2	1415278	1415279	rs410930	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	6p22.1		rs410930-G	0.437235	1E-8		0.024544	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
595	chr6_cox_hap2	1415519	1415520	rs1611337	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6p22.1		rs1611337-G	0.437603	2E-14		0.0312596	[0.023-0.039] unit decrease	NR [11722792] (imputed)	N
595	chr6_cox_hap2	1415519	1415520	rs1611337	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	6p22.1		rs1611337-G	0.437688	8E-10		0.0255967	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
595	chr6_cox_hap2	1415519	1415520	rs1611337	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p22.1		rs1611337-G	0.437603	8E-16		0.0334002	[0.025-0.042] unit decrease	NR [11722792] (imputed)	N
595	chr6_cox_hap2	1415519	1415520	rs1611337	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6p22.1		rs1611337-G	0.437603	9E-12		0.0276947	[0.02-0.036] unit decrease	NR [11722792] (imputed)	N
595	chr6_cox_hap2	1415519	1415520	rs1611337	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6p22.1		rs1611337-G	0.437603	1E-13		0.0306584	[0.023-0.039] unit increase	NR [11722792] (imputed)	N
595	chr6_cox_hap2	1415519	1415520	rs1611337	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	6p22.1		rs1611337-G	0.437688	4E-9		0.0245909	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
595	chr6_cox_hap2	1415519	1415520	rs1611337	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	6p22.1		rs1611337-G	0.437603	2E-9		0.0245327	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
595	chr6_cox_hap2	1415519	1415520	rs1611337	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p22.1		rs1611337-G	0.437603	5E-18		0.036723	[0.028-0.045] unit increase	NR [11722792] (imputed)	N
595	chr6_cox_hap2	1415519	1415520	rs1611337	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6p22.1		rs1611337-G	0.437603	5E-10		0.0250212	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
595	chr6_cox_hap2	1415519	1415520	rs1611337	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	6p22.1		rs1611337-G	0.437688	5E-8		0.0224294	[0.014-0.03] unit increase	NR [11722792] (imputed)	N
595	chr6_cox_hap2	1415519	1415520	rs1611337	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p22.1		rs1611337-G	0.437603	4E-17		0.0351407	[0.027-0.043] unit increase	NR [11722792] (imputed)	N
595	chr6_cox_hap2	1415519	1415520	rs1611337	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6p22.1		rs1611337-G	0.437603	7E-11		0.02633	[0.018-0.034] unit increase	NR [11722792] (imputed)	N
595	chr6_cox_hap2	1415737	1415738	rs9259970	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6p22.1		rs9259970-G	0.717498	4E-15		0.0371322	[0.028-0.046] unit decrease	NR [11722792] (imputed)	N
595	chr6_cox_hap2	1415737	1415738	rs9259970	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	6p22.1		rs9259970-G	0.717498	5E-8		0.0259759	[0.017-0.035] unit decrease	NR [11722792] (imputed)	N
595	chr6_cox_hap2	1415737	1415738	rs9259970	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	6p22.1		rs9259970-G	0.717498	6E-10		0.0286546	[0.02-0.038] unit decrease	NR [11722792] (imputed)	N
595	chr6_cox_hap2	1417183	1417184	rs3098023	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium HDL	115,082 European ancestry individuals	NA	6p22.1		rs3098023-A	0.863945	3E-9		0.0367615	[0.025-0.049] unit increase	NR [11722792] (imputed)	N
595	chr6_cox_hap2	1417183	1417184	rs3098023	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large HDL	115,082 European ancestry individuals	NA	6p22.1		rs3098023-A	0.863945	6E-9		0.0349811	[0.023-0.047] unit increase	NR [11722792] (imputed)	N
595	chr6_cox_hap2	1417183	1417184	rs3098023	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in HDL	115,082 European ancestry individuals	NA	6p22.1		rs3098023-A	0.863945	2E-8		0.0348764	[0.023-0.047] unit increase	NR [11722792] (imputed)	N
595	chr6_cox_hap2	1417183	1417184	rs3098023	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium HDL	115,082 European ancestry individuals	NA	6p22.1		rs3098023-A	0.863945	3E-13		0.0429887	[0.031-0.055] unit increase	NR [11722792] (imputed)	N
595	chr6_cox_hap2	1417183	1417184	rs3098023	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in HDL	115,082 European ancestry individuals	NA	6p22.1		rs3098023-A	0.863945	9E-11		0.0369227	[0.026-0.048] unit increase	NR [11722792] (imputed)	N
595	chr6_cox_hap2	1417198	1417199	rs28749114	33002439	Jin G	2020-10-01	Lancet Oncol	Genetic risk, incident gastric cancer, and healthy lifestyle: a meta-analysis of genome-wide association studies and prospective cohort study.	Gastric cancer	10,254 Han Chinese ancestry cases, 10,914 Han Chinese ancestry controls	NA	6p22.1	NR	rs28749114-A	0.6	5E-9		1.14	NR	Affymetrix, Illumina [6957974] (imputed)	N
595	chr6_cox_hap2	1417198	1417199	rs28749114	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p22.1	HLA-A	rs28749114-G	0.359	4E-17	(Tapasin-related protein, TAPBPL.6364.7.3)	0.22	[0.16-0.28] unit decrease	Affymetrix [10572788] (imputed)	N
595	chr6_cox_hap2	1417456	1417457	rs112580141	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HVEM on naive CD8+ T cell	1,247 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p22.1		rs112580141-C	0.37079	2E-8		0.2622	[0.17-0.35] unit increase	Illumina [16410374] (imputed)	N
595	chr6_cox_hap2	1419581	1419582	rs28749130	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	6p22.1	HLA-A	rs28749130-A	0.290175	2E-20		0.05423409	[0.043-0.066] unit increase	Affymetrix [93095623] (imputed)	N
595	chr6_cox_hap2	1419641	1419642	rs28749131	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6p22.1	NR	rs28749131-G	0.6706	2E-10		1.041016	[1.03-1.05]	Affymetrix [15688218] (imputed)	N
595	chr6_cox_hap2	1420557	1420558	rs13203830	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p22.1	NR	rs13203830-?	NR	8E-10				Affymetrix [~ 8270000] (imputed)	N
595	chr6_cox_hap2	1420786	1420787	rs9260078	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein B2M	5,353 Icelandic ancestry individuals	NA	6p22.1		rs9260078-A	0.3408	3E-12		0.126365	[0.091-0.162] unit increase	Illumina [7506463] (imputed)	N
595	chr6_cox_hap2	1420970	1420971	rs1632887	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		6p22.1	HLA-A	rs1632887-T	0.725853	2E-12		0.0110934	[0.008-0.0142] unit decrease	Affymetrix [12370749]	N
595	chr6_cox_hap2	1421032	1421033	rs138847126	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental extreme longevity (95 years and older)	1,339 middle-aged British cases, 40,934 middle-aged British controls	NA	6p22.1	NR	rs138847126-?	NR	7E-6		0.01176	[0.0066-0.0169] unit decrease	Affymetrix [9658292] (imputed)	N
595	chr6_cox_hap2	1421573	1421574	rs534723171	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p22.1	NR	rs534723171-T	0.061	2E-30	(conditional)	2.735	[2.56-2.91]	Illumina [11270530] (imputed)	N
595	chr6_cox_hap2	1425637	1425638	rs34941730	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p22.1	HLA-A	rs34941730-G	0.119	2E-9		0.102	[0.069-0.135] unit decrease	Affymetrix, Illumina [7374092] (imputed)	N
595	chr6_cox_hap2	1426284	1426285	rs376253	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6p22.1	HLA-A	rs376253-A	NR	3E-10		0.0221166	[0.015-0.029] unit decrease	Affymetrix [321114] (imputed)	N
595	chr6_cox_hap2	1426524	1426525	rs17179564	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	82,810 East Asian ancestry individuals	NA	6p22.1		rs17179564-A	0.36573	6E-10		0.0301926	[0.021-0.04] unit increase	Illumina [13467171] (imputed)	N
595	chr6_cox_hap2	1427638	1427639	rs2517720	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6p22.1	HLA-A	rs2517720-C	0.555569	1E-14		0.022822132	[0.017-0.029] unit increase	Affymetrix [93095623] (imputed)	N
595	chr6_cox_hap2	1428555	1428556	rs1655901	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	6p22.1	HLA-A	rs1655901-C	0.557583	3E-22		0.02534704	[0.02-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
595	chr6_cox_hap2	1428636	1428637	rs9260313	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p22.1	HLA-A	rs9260313-C		5E-24		0.02	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
595	chr6_cox_hap2	1428636	1428637	rs9260313	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	6p22.1	HLA-A	rs9260313-C	0.2875	1E-15		0.03200038	[0.024-0.04] unit increase	Affymetrix [~ 2500000] (imputed)	N
595	chr6_cox_hap2	1428636	1428637	rs9260313	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	6p22.1	HLA-A	rs9260313-C	0.2876	1E-15		0.03178619	[0.024-0.04] unit increase	Affymetrix [~ 2500000] (imputed)	N
595	chr6_cox_hap2	1429854	1429855	rs2517713	19664746	Tse KP	2009-08-05	Am J Hum Genet	Genome-wide association study reveals multiple nasopharyngeal carcinoma-associated loci within the HLA region at chromosome 6p21.3.	Nasopharyngeal carcinoma	277 Han Chinese ancestry cases, 285 Han Chinese ancestry controls	635 Han Chinese ancestry cases, 1,640 Han Chinese ancestry controls	6p22.1	HLA-A	rs2517713-A	0.62	4E-20		1.88	[1.65-2.15]	Illumina [480365]	N
595	chr6_cox_hap2	1430864	1430865	rs9260426	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p22.1		rs9260426-?	NR	6E-27		0.0229231	[0.019-0.027] unit increase	Affymetrix [20259828] (imputed)	N
595	chr6_cox_hap2	1430864	1430865	rs9260426	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	6p22.1	HLA-A	rs9260426-A	0.498682	2E-8	(women)	0.0236393	[0.015-0.033] unit increase	NR [17166351] (imputed)	N
595	chr6_cox_hap2	1430864	1430865	rs9260426	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	6p22.1	HLA-A	rs9260426-A	0.498488	3E-11		0.020854	[0.014-0.027] unit increase	NR [17166351] (imputed)	N
595	chr6_cox_hap2	1431534	1431535	rs7747253	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	6p22.1	HLA-A	rs7747253-C	0.499099	1E-33		0.022146	[0.019-0.026] unit increase	NR [13737936] (imputed)	N
595	chr6_cox_hap2	1432087	1432088	rs9260489	23417110	Tin A	2013-02-16	Hum Genet	Genome-wide association study identified the human leukocyte antigen region as a novel locus for plasma beta-2 microglobulin.	Beta-2 microglubulin plasma levels	6,728 European ancestry individuals		6p22.1	HLA-A	rs9260489-G	0.58	2E-22		0.04	[0.032-0.048] unit decrease	Affymetrix [2500000] (imputed)	N
595	chr6_cox_hap2	1432087	1432088	rs9260489	22190364	Patsopoulos NA	2011-12-01	Ann Neurol	Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.	Multiple sclerosis	5,545 European ancestry cases, 12,153 European ancestry controls	NA	6p22.1	HLA-B	rs9260489-T	0.45	1E-11		1.21	[NR]	Affymetrix, Illumina [2529394]	N
595	chr6_cox_hap2	1432177	1432178	rs9260492	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p22.1		rs9260492-T	0.5	3E-19				Affymetrix [10369434] (imputed)	N
595	chr6_cox_hap2	1432468	1432469	rs9260500	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p22.1		rs9260500-T	0.5	2E-56				Affymetrix [10369434] (imputed)	N
595	chr6_cox_hap2	1432789	1432790	rs28749167	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	286 European ancestry cases, 2,652 European ancestry controls, 76 Han Chinese ancestry cases, 889 Han Chinese ancestry controls, 46 South Asian ancestry cases, 501 South Asian ancestry controls, 683 Turkish ancestry cases, 1,721 Turkish ancestry controls	NA	6p22.1	HLA-G	rs28749167-?	NR	2E-9	(conditional on rs2844678, rs12524487, rs17193507 and rs12526858)	1.43	NR	Illumina [up to 4495750] (imputed)	N
595	chr6_cox_hap2	1432928	1432929	rs9260526	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (underestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	6p22.1	NR	rs9260526-?	NR	5E-9		5.864	NR z score increase	Illumina [at least 830937] (imputed)	N
595	chr6_cox_hap2	1433215	1433216	rs137886986	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6p22.1	HLA-W	rs137886986-A	0.09576	8E-24		0.039658234	[0.032-0.047] unit increase	Affymetrix [93095623] (imputed)	N
595	chr6_cox_hap2	1434403	1434404	rs28780071	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	Intrinsic epigenetic age acceleration	34,461 European ancestry individuals	NA	6p22.1	NR	rs28780071-T	0.3313	4E-9		0.2035	[0.14-0.27] unit increase	Affymetrix, Illumina [7567980] (imputed)	N
595	chr6_cox_hap2	1434476	1434477	rs16896742	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NPTX1	5,365 Icelandic ancestry individuals	NA	6p22.1		rs16896742-G	0.4238	6E-28		0.206363	[0.17-0.24] unit decrease	Illumina [7506463] (imputed)	N
595	chr6_cox_hap2	1434476	1434477	rs16896742	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	6p22.1	HLA-A	rs16896742-G	0.38	3E-10		0.04	[0.028-0.052] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
595	chr6_cox_hap2	1434490	1434491	rs9260603	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p22.1	HLA-W	rs9260603-T	NR	2E-8		0.0159518	[0.01-0.021] unit increase	Affymetrix [319769] (imputed)	N
595	chr6_cox_hap2	1434490	1434491	rs9260603	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p22.1	HLA-W	rs9260603-T	NR	4E-8		0.0156092	[0.01-0.021] unit increase	Affymetrix [319769] (imputed)	N
595	chr6_cox_hap2	1434718	1434718	rs9280816	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	6p22.1		rs9280816-T	0.537249	2E-8		0.0232259	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
595	chr6_cox_hap2	1434718	1434718	rs9280816	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6p22.1		rs9280816-T	0.537249	8E-13		0.0289715	[0.021-0.037] unit increase	NR [11722792] (imputed)	N
595	chr6_cox_hap2	1434718	1434718	rs9280816	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	6p22.1		rs9280816-T	0.537257	5E-8		0.0221633	[0.014-0.03] unit increase	NR [11722792] (imputed)	N
595	chr6_cox_hap2	1434718	1434718	rs9280816	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very small VLDL	115,082 European ancestry individuals	NA	6p22.1		rs9280816-T	0.537249	3E-9		0.0244552	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
595	chr6_cox_hap2	1434822	1434823	rs9260619	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p22.1	NR	rs9260619-?	NR	3E-11		0.2395	[0.17-0.31] unit increase	Illumina [at least 560000] (imputed)	N
595	chr6_cox_hap2	1434827	1434828	rs9260620	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	6p22.1	HLA-W	rs9260620-G	0.3359	2E-74		0.06971236	[0.062-0.077] unit decrease	Affymetrix [~ 2500000] (imputed)	N
595	chr6_cox_hap2	1434827	1434828	rs9260620	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	6p22.1	HLA-W	rs9260620-G	0.3358	2E-44		0.05337227	[0.046-0.061] unit decrease	Affymetrix [~ 2500000] (imputed)	N
595	chr6_cox_hap2	1434827	1434828	rs9260620	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	6p22.1	HLA-W	rs9260620-G	0.3358	4E-40		0.05070884	[0.043-0.058] unit decrease	Affymetrix [~ 2500000] (imputed)	N
595	chr6_cox_hap2	1434827	1434828	rs9260620	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	6p22.1	HLA-W	rs9260620-G	0.3358	2E-39		0.05008696	[0.043-0.058] unit decrease	Affymetrix [~ 2500000] (imputed)	N
595	chr6_cox_hap2	1434827	1434828	rs9260620	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	6p22.1	HLA-W	rs9260620-G	0.3358	6E-51		0.05759035	[0.05-0.065] unit decrease	Affymetrix [~ 2500000] (imputed)	N
595	chr6_cox_hap2	1434827	1434828	rs9260620	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	6p22.1	HLA-W	rs9260620-G	0.3357	4E-53		0.05836372	[0.051-0.066] unit decrease	Affymetrix [~ 2500000] (imputed)	N
595	chr6_cox_hap2	1434827	1434828	rs9260620	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	6p22.1	HLA-W	rs9260620-G	0.3358	7E-45		0.05377813	[0.046-0.061] unit decrease	Affymetrix [~ 2500000] (imputed)	N
595	chr6_cox_hap2	1434983	1434984	rs7768235	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p22.1	HLA-W	rs7768235-C	0.514186	1E-16		0.022017317	[0.017-0.027] unit increase	Affymetrix [93095623] (imputed)	N
595	chr6_cox_hap2	1434983	1434984	rs7768235	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	6p22.1	HLA-W	rs7768235-C	0.514229	5E-14		0.02060967	[0.015-0.026] unit increase	Affymetrix [93095623] (imputed)	N
595	chr6_cox_hap2	1434983	1434984	rs7768235	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p22.1		rs7768235-?	NR	7E-25		0.0219262	[0.018-0.026] unit increase	Affymetrix [20259828] (imputed)	N
595	chr6_cox_hap2	1435086	1435087	rs2904758	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	6p22.1	HLA-W	rs2904758-A	0.7187	6E-17		0.03315845	[0.025-0.041] unit decrease	Affymetrix [~ 2500000] (imputed)	N
595	chr6_cox_hap2	1435158	1435159	rs9260639	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	6p22.1	HLA-W	rs9260639-T	0.1389	2E-14		0.03938988	[0.029-0.05] unit increase	Affymetrix [~ 2500000] (imputed)	N
595	chr6_cox_hap2	1435238	1435239	rs2571389	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p22.1		rs2571389-T	0.5	1E-30				Affymetrix [10369434] (imputed)	N
595	chr6_cox_hap2	1435289	1435290	rs2571390	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8 on Effector Memory CD8+ T cell	2,912 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p22.1		rs2571390-C	0.82253	6E-22		0.3643	[0.29-0.44] unit increase	Illumina [17945888] (imputed)	N
595	chr6_cox_hap2	1435577	1435578	rs2571391	22075330	Granada M	2011-11-08	J Allergy Clin Immunol	A genome-wide association study of plasma total IgE concentrations in the Framingham Heart Study.	IgE levels	6,819 European ancestry individuals	7,809 European ancestry indivduals	6p22.1	HLA-A	rs2571391-C	NR	1E-15		0.06	[NR] unit increase	Affymetrix [2540223] (imputed)	N
595	chr6_cox_hap2	1435958	1435959	rs2571392	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	6p22.1	HLA-W	rs2571392-A	0.314446	4E-11		0.023026897	[0.016-0.03] unit increase	Affymetrix [93095623] (imputed)	N
595	chr6_cox_hap2	1436032	1436033	rs73725598	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	6p22.1	HLA-W	rs73725598-C	0.0934	2E-9		0.03755279	[0.025-0.05] unit decrease	Affymetrix [~ 2500000] (imputed)	N
595	chr6_cox_hap2	1436105	1436106	rs2571394	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TAPBPL	5,368 Icelandic ancestry individuals	NA	6p22.1		rs2571394-G	0.3722	1E-15		0.160938	[0.12-0.2] unit decrease	Illumina [7506463] (imputed)	N
595	chr6_cox_hap2	1436156	1436157	rs17179851	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Gynecologic disease	7,975 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs17179851-?		7E-8		1.11	[1.07-1.15]	Illumina [7645193] (imputed)	N
595	chr6_cox_hap2	1436156	1436157	rs17179851	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Gynecologic disease	7,315 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs17179851-?		7E-7				Illumina [7645193] (imputed)	N
595	chr6_cox_hap2	1436258	1436259	rs1808199	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	6p22.1	HLA-W	rs1808199-T	0.092214	4E-22		0.03959165	[0.032-0.048] unit decrease	Affymetrix [93095623] (imputed)	N
595	chr6_cox_hap2	1436819	1436820	rs114193679	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mumps	31,227 European ancestry cases, 54,153 European ancestry controls	NA	6p22.1	HLA-A	rs114193679-G	0.99	2E-17		1.72	[1.62-1.84]	Illumina [at least 560000] (imputed)	N
595	chr6_cox_hap2	1436984	1436985	rs17186335	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p22.1	NR	rs17186335-?	NR	3E-8		0.0898	[0.058-0.122] unit decrease	Illumina [at least 560000] (imputed)	N
595	chr6_cox_hap2	1437593	1437594	rs62392216	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	57 Italian ancestry cases, 931 Italian ancestry controls	NA	6p22.1	HLA-B	rs62392216-?	NR	1E-11				Illumina [4425173] (imputed)	N
595	chr6_cox_hap2	1437593	1437594	rs62392216	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	229 European ancestry cases, 1,088 European ancestry controls	NA	6p22.1	HLA-G	rs62392216-?	NR	3E-11	(conditional on rs12524487)			Illumina [4388215] (imputed)	N
595	chr6_cox_hap2	1438093	1438094	rs9260679	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	6p22.1	NR	rs9260679-?	NR	9E-90		20.092	NR z score increase	Illumina [at least 830937] (imputed)	N
595	chr6_cox_hap2	1438811	1438812	rs2735085	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	HLA-W	rs2735085-A	NR	5E-8		0.0198962	[0.013-0.027] unit decrease	Affymetrix [321016] (imputed)	N
595	chr6_cox_hap2	1438998	1438999	rs114577328	28043905	Nicoletti P	2016-12-30	Gastroenterology	Association of Liver Injury From Specific Drugs, or Groups of Drugs, With Polymorphisms in HLA and Other Genes in a Genome-Wide Association Study.	Drug-induced liver injury	862 European ancestry cases and 10,588 European ancestry controls	NA	6p22.1	MHC	rs114577328-?	0.01	2E-8		2.7	1.9-3.8	Illumina [505740] (imputed)	N
595	chr6_cox_hap2	1439438	1439439	rs2571400	34642315	Ferreiro-Iglesias A	2021-10-12	Nat Commun	Germline determinants of humoral immune response to HPV-16 protect against oropharyngeal cancer.	Human papilloma virus 16 positive oropharyngeal cancer	1,078 European ancestry cases, 5,256 European ancestry controls	NA	6p22.1		rs2571400-G	NR	3E-6		1.2905		Illumina [7574753] (imputed)	N
595	chr6_cox_hap2	1439438	1439439	rs2571400	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	HLA-W	rs2571400-C	NR	5E-8		5.453	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
595	chr6_cox_hap2	1440790	1440791	rs2517690	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p22.1	NR	rs2517690-?	NR	7E-9				Affymetrix [~ 8270000] (imputed)	N
596	chr6_cox_hap2	1442656	1442657	rs56262516	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8 on CD28- CD8+ T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p22.1		rs56262516-A	0.27456	1E-11		0.23	[0.16-0.3] unit increase	Illumina [17954496] (imputed)	N
596	chr6_cox_hap2	1442656	1442657	rs56262516	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8 on CD28+ CD45RA- CD8+ T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p22.1		rs56262516-A	0.27456	7E-13		0.2531	[0.18-0.32] unit increase	Illumina [17954496] (imputed)	N
596	chr6_cox_hap2	1443062	1443063	rs192543598	31066027	Nicoletti P	2019-05-07	Clin Pharmacol Ther	Shared genetic risk factors across carbamazepine-induced hypersensitivity reactions.	Carbamazepine-induced serious cutaneous adverse reaction	43 European ancestry cases, 10,701 European ancestry controls	NA	6p22.1	NR	rs192543598-G	0.01	2E-12		18.11	[8.03-40.88]	Illumina [5271349] (imputed)	N
596	chr6_cox_hap2	1443622	1443623	rs2517683	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	6p22.1	HLA-W	rs2517683-C	NR	5E-10		0.0183528	[0.013-0.024] unit decrease	Affymetrix [321788] (imputed)	N
596	chr6_cox_hap2	1444009	1444010	rs2523933	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	HLA-W	rs2523933-T	NR	2E-9		6.01	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
596	chr6_cox_hap2	1444942	1444943	rs2517678	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	6p22.1	intergenic	rs2517678-T	0.3811	2E-9		0.02249725	[0.015-0.03] unit increase	Affymetrix [~ 2500000] (imputed)	N
596	chr6_cox_hap2	1444978	1444979	rs6457109	33574277	Kawai Y	2021-02-11	NPJ Genom Med	Mapping of susceptible variants for cold medicine-related Stevens-Johnson syndrome by whole-genome resequencing.	Cold medicine-related Stevens-Johnson syndrome/toxic epidermal necrolysis (SJS/TEN) with severe ocular complications	133 Japanese ancestry cases, 418 Japanese ancestry controls	NA	6p22.1		rs6457109-C	0.2519	3E-16		4.516		Illumina [7608150]	N
596	chr6_cox_hap2	1445736	1445737	rs6914699	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	MICD	rs6914699-T	NR	3E-8		5.569	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
596	chr6_cox_hap2	1445878	1445879	rs6935053	23511034	Yang SK	2013-04-01	Inflamm Bowel Dis	Genome-wide association study of ulcerative colitis in Koreans suggests extensive overlapping of genetic susceptibility with Caucasians.	Ulcerative colitis	388 Korean ancestry cases, 739 Korean ancestry controls	417 Korean ancestry cases, 732 Korean ancestry controls	6p22.1	HCG9	rs6935053-?	NR	2E-6	(Conditioned on rs9271366)			Illumina [581060]	N
596	chr6_cox_hap2	1446963	1446964	rs3893464	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p22.1		rs3893464-G	0.514	7E-43				Affymetrix [10369434] (imputed)	N
596	chr6_cox_hap2	1446963	1446964	rs3893464	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	6p22.1	MICD	rs3893464-A	0.4884	7E-54		0.05503962	[0.048-0.062] unit decrease	Affymetrix [~ 2500000] (imputed)	N
596	chr6_cox_hap2	1446963	1446964	rs3893464	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	6p22.1	MICD	rs3893464-A	0.4883	8E-55		0.05548136	[0.049-0.062] unit decrease	Affymetrix [~ 2500000] (imputed)	N
596	chr6_cox_hap2	1446963	1446964	rs3893464	21900946	Nakabayashi K	2011-09-08	J Hum Genet	Identification of independent risk loci for Graves' disease within the MHC in the Japanese population.	Graves' disease	1,119 Japanese ancestry cases, 2,718 Japanese ancestry controls	432 Japanese ancestry cases, 1,157 Japanese ancestry controls	6p22.1	MHC	rs3893464-G	0.36	2E-20		1.53	[1.39-1.67]	Perlegen [268068]	N
596	chr6_cox_hap2	1447118	1447119	rs3893463	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	MICD	rs3893463-T	NR	2E-8		5.65	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
596	chr6_cox_hap2	1447436	1447437	rs56402621	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	6p22.1	HLA-A, ZNRD1-AS1	rs56402621-T	0.0181	2E-7		0.0330166	[0.021-0.045] unit increase	Affymetrix [11880941] (imputed)	N
596	chr6_cox_hap2	1448351	1448352	rs9260765	33143745	Andlauer TFM	2020-11-04	BMC Med	Treatment- and population-specific genetic risk factors for anti-drug antibodies against interferon-beta: a GWAS.	Binding antibody response to interferon beta therapy in multiple sclerosis (antibody levels; all treatment preparations)	up to 2,000 German and Swedish ancestry individuals	up to 757 German and Swedish ancestry individuals	6p22.1		rs9260765-C	0.45	5E-11		0.17372645	[0.12-0.23] unit increase	Illumina [8550834] (imputed)	N
596	chr6_cox_hap2	1449053	1449057	rs60131261	27723757	Jin Y	2016-11-01	Nat Genet	Genome-wide association studies of autoimmune vitiligo identify 23 new risk loci and highlight key pathways and regulatory variants.	Vitiligo	2,853 European ancestry cases and 37,405 European ancestry controls	1,827 European ancestry cases and 2,181 European ancestry controls	6p22.1	HLA-A	rs60131261-?	NR	2E-66		1.535	NR	Illumina [8966411] (imputed)	N
596	chr6_cox_hap2	1449272	1449273	rs1061539	30566020	Fukaya E	2018-12-01	Circulation	Clinical and Genetic Determinants of Varicose Veins.	Varicose veins	9,577 British ancestry cases, 327,959 British ancestry controls	NA	6p22.1	NR	rs1061539-C	0.83	2E-9		0.113	[0.076-0.15] unit decrease	Affymetrix [10972371] (imputed)	N
596	chr6_cox_hap2	1449501	1449502	rs2523972	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p22.1	MICD	rs2523972-C	NR	1E-11		0.0191491	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
596	chr6_cox_hap2	1449501	1449502	rs2523972	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p22.1	MICD	rs2523972-C	NR	1E-10		0.0182302	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
596	chr6_cox_hap2	1449501	1449502	rs2523972	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	MICD	rs2523972-C	NR	1E-12		0.0200168	[0.014-0.026] unit decrease	Affymetrix [321016] (imputed)	N
596	chr6_cox_hap2	1449641	1449642	rs1061535	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	6p22.1	NR	rs1061535-?	NR	1E-6		0.0535	[0.032-0.075] unit decrease	Illumina [at least 560000] (imputed)	N
596	chr6_cox_hap2	1449694	1449695	rs2517671	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	6p22.1	HCG9	rs2517671-G	0.419267	3E-22		0.023432834	[0.019-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
596	chr6_cox_hap2	1450865	1450866	rs2523968	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p22.1	NR	rs2523968-A	0.429	4E-12	(conditional)	1.132	[1.1-1.17]	Illumina [11270530] (imputed)	N
596	chr6_cox_hap2	1451296	1451297	rs2523961	29784950	Sawai H	2018-05-21	Sci Rep	Genome-wide association study identified new susceptible genetic variants in HLA class I region for hepatitis B virus-related hepatocellular carcinoma.	Hepatocellular carcinoma in hepatitis B infection	473 Japanese ancestry chronic hepatitis and hepatocellular carcinoma cases, 516 Japanese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma	153 Japanese ancestry chronic hepatitis and hepatocellular carcinoma cases, 614 Japanese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma, 94 Chinese ancestry chronic hepatitis and hepatocellular carcinoma cases, 187 Chinese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma, 185 Thai ancestry chronic hepatitis and hepatocellular carcinoma cases, 198 Thai ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma	6p22.1	HLA	rs2523961-?	NR	6E-11		1.91	[1.56-2.37] Japanese	Affymetrix [447830]	N
596	chr6_cox_hap2	1451296	1451297	rs2523961	29784950	Sawai H	2018-05-21	Sci Rep	Genome-wide association study identified new susceptible genetic variants in HLA class I region for hepatitis B virus-related hepatocellular carcinoma.	Hepatocellular carcinoma in hepatitis B infection	473 Japanese ancestry chronic hepatitis and hepatocellular carcinoma cases, 516 Japanese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma	153 Japanese ancestry chronic hepatitis and hepatocellular carcinoma cases, 614 Japanese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma, 94 Chinese ancestry chronic hepatitis and hepatocellular carcinoma cases, 187 Chinese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma, 185 Thai ancestry chronic hepatitis and hepatocellular carcinoma cases, 198 Thai ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma	6p22.1	HLA	rs2523961-?	NR	6E-10	(Japanese)	1.91	[1.56-2.37]	Affymetrix [447830]	N
596	chr6_cox_hap2	1453133	1453134	rs9295825	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p22.1	NR	rs9295825-?	NR	3E-18		0.1197	[0.092-0.147] unit increase	Illumina [at least 560000] (imputed)	N
596	chr6_cox_hap2	1453515	1453516	rs444252	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Strep throat	52,487 European ancestry cases, 22,017 European ancestry controls	NA	6p22.1	NR	rs444252-?	NR	1E-6		0.0267	[0.016-0.037] unit increase	Illumina [at least 560000] (imputed)	N
596	chr6_cox_hap2	1453645	1453646	rs2523946	32912934	Li M	2020-09-10	J Am Soc Nephrol	Genome-Wide Meta-Analysis Identifies Three Novel Susceptibility Loci and Reveals Ethnic Heterogeneity of Genetic Susceptibility for IgA Nephropathy.	IgA nephropathy	2,628 Chinese ancestry cases, 11,563 Chinese ancestry controls	6,879 Han Chinese ancestry cases, 9,019 Han Chinese ancestry controls, 1,039 Italian ancestry cases, 1,289 Italian ancestry controls	6p22.1	HLA-A	rs2523946-C	0.5077594888869671	2E-8	(East Asian)	1.2170416	[1.13667796674979-1.3030869883916]	NR [3611808] (imputed)	N
596	chr6_cox_hap2	1453645	1453646	rs2523946	26028593	Li M	2015-06-01	Nat Commun	Identification of new susceptibility loci for IgA nephropathy in Han Chinese.	IgA nephropathy	1,434 Han Chinese ancestry cases, 10,661 Han Chinese ancestry controls	6,879 Han Chinese ancestry cases, 9,019 Han Chinese ancestry controls	6p22.1	NR	rs2523946-C	0.511	5E-11		1.317	[1.217-1.426]	Illumina [3792949] (imputed)	N
596	chr6_cox_hap2	1453645	1453646	rs2523946	22197929	Yu XQ	2011-12-25	Nat Genet	A genome-wide association study in Han Chinese identifies multiple susceptibility loci for IgA nephropathy.	IgA nephropathy	1,434 Han Chinese ancestry cases, 4,270 Han Chinese ancestry controls	2,703 Han Chinese ancestry cases, 3,464 Han Chinese ancestry controls	6p22.1	HLA-A	rs2523946-C	0.50	2E-11		1.21	[1.15-1.28]	Illumina [444882]	N
596	chr6_cox_hap2	1453785	1453786	rs3823355	20410501	Jin Y	2010-04-21	N Engl J Med	Variant of TYR and autoimmunity susceptibility loci in generalized vitiligo.	Vitiligo	1,392 European ancestry cases, 2,629 European ancestry controls	647 European ancestry cases, 1,056 European ancestry controls, 183 European ancestry trios, 1,383 European ancestry individuals from 332 families	6p22.1	HLA-A, HCG9	rs3823355-T	0.29	9E-23		1.5	[1.39-1.63]	Illumina [520460]	N
596	chr6_cox_hap2	1454088	1454089	rs35835721	33574277	Kawai Y	2021-02-11	NPJ Genom Med	Mapping of susceptible variants for cold medicine-related Stevens-Johnson syndrome by whole-genome resequencing.	Cold medicine-related Stevens-Johnson syndrome/toxic epidermal necrolysis (SJS/TEN) with severe ocular complications	133 Japanese ancestry cases, 418 Japanese ancestry controls	NA	6p22.1		rs35835721-G	0.4624	8E-15		3.091		Illumina [7608150]	N
596	chr6_cox_hap2	1454376	1454377	rs1960063	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	HCG9	rs1960063-A	NR	4E-10		0.0213735	[0.015-0.028] unit decrease	Affymetrix [323858] (imputed)	N
596	chr6_cox_hap2	1454376	1454377	rs1960063	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	HCG9	rs1960063-A	NR	4E-10		0.0213569	[0.015-0.028] unit decrease	Affymetrix [127266] (imputed)	N
596	chr6_cox_hap2	1454769	1454770	rs6904029	24939585	Fransen E	2014-06-18	Eur J Hum Genet	Genome-wide association analysis demonstrates the highly polygenic character of age-related hearing impairment.	Age-related hearing impairment	1,489 European ancestry individuals	NA	6p22.1	HLA-A29.1, HCG9	rs6904029-?		3E-6	(PC3)	0.0464	[NR] unit decrease	Illumina [4167292] (imputed)	N
596	chr6_cox_hap2	1455356	1455357	rs2394250	23749187	Cortes A	2013-07-01	Nat Genet	Identification of multiple risk variants for ankylosing spondylitis through high-density genotyping of immune-related loci.	Ankylosing spondylitis	9,069 European ancestry cases, 1,550 East Asian ancestry cases, 13,578 European ancestry controls, 1,567 East Asian ancestry controls	NA	6p22.1	HLA-A*0201	rs2394250-?	0.421	8E-51	(EA)	1.541		Illumina [128935]	N
596	chr6_cox_hap2	1455388	1455389	rs2394251	33269293	Kannambath S	2020-10-16	Open Forum Infect Dis	Genome-Wide Association Study Identifies Novel Colony Stimulating Factor 1 Locus Conferring Susceptibility to Cryptococcosis in Human Immunodeficiency Virus-Infected South Africans.	Cryptococcosis in HIV infection	319 South African ancestry cases, 399 South African ancestry controls	NA	6p22.1	HLA-H	rs2394251-?	NR	9E-6		0.7439	[NR]	Illumina [2686126] (imputed)	N
596	chr6_cox_hap2	1455415	1455416	rs3823363	34642315	Ferreiro-Iglesias A	2021-10-12	Nat Commun	Germline determinants of humoral immune response to HPV-16 protect against oropharyngeal cancer.	Oropharynx cancer and human papilloma virus 16 negative oropharyngeal cancer	2,359 European ancestry cases, 565 European ancestry controls	NA	6p22.1		rs3823363-A	NR	1E-7		0.8222		Illumina [up to 7574753] (imputed)	N
596	chr6_cox_hap2	1456161	1456162	rs3823379	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	6p22.1	HLA-A	rs3823379-T	0.487762	1E-16		0.0171763	[0.013-0.021] unit decrease	Affymetrix [NR] (imputed)	N
596	chr6_cox_hap2	1456246	1456247	rs2735075	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p22.1		rs2735075-T	0.592	2E-18				Affymetrix [10369434] (imputed)	N
596	chr6_cox_hap2	1457652	1457653	rs3132685	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small HDL	115,082 European ancestry individuals	NA	6p22.1		rs3132685-G	0.865719	1E-10		0.0393348	[0.027-0.051] unit increase	NR [11722792] (imputed)	N
596	chr6_cox_hap2	1457652	1457653	rs3132685	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	6p22.1		rs3132685-G	0.865719	6E-9		0.0355211	[0.024-0.047] unit decrease	NR [11722792] (imputed)	N
596	chr6_cox_hap2	1457652	1457653	rs3132685	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small HDL	115,082 European ancestry individuals	NA	6p22.1		rs3132685-G	0.865719	5E-12		0.0418299	[0.03-0.054] unit increase	NR [11722792] (imputed)	N
596	chr6_cox_hap2	1457652	1457653	rs3132685	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-3 fatty acid levels	115,006 European ancestry individuals	NA	6p22.1		rs3132685-G	0.865725	2E-11		0.0394662	[0.028-0.051] unit increase	NR [11722792] (imputed)	N
596	chr6_cox_hap2	1457652	1457653	rs3132685	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Monounsaturated fatty acid levels	115,006 European ancestry individuals	NA	6p22.1		rs3132685-G	0.865725	2E-8		0.033954	[0.022-0.046] unit increase	NR [11722792] (imputed)	N
596	chr6_cox_hap2	1457652	1457653	rs3132685	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small HDL	115,082 European ancestry individuals	NA	6p22.1		rs3132685-G	0.865719	5E-10		0.0372621	[0.026-0.049] unit increase	NR [11722792] (imputed)	N
596	chr6_cox_hap2	1457652	1457653	rs3132685	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p22.1	NR	rs3132685-A	0.1302	2E-13		0.0131	[0.0096-0.0166] unit decrease	NR [7666894] (imputed)	N
596	chr6_cox_hap2	1466815	1466816	rs17180647	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p22.1	NR	rs17180647-?	NR	4E-7		0.3884	[0.24-0.54] unit decrease	Illumina [at least 560000] (imputed)	N
596	chr6_cox_hap2	1471716	1471717	rs7749944	30850646	Tziotzios C	2019-03-08	Nat Commun	Genome-wide association study in frontal fibrosing alopecia identifies four susceptibility loci including HLA-B*07:02.	Frontal fibrosing alopecia	1,016 European ancestry cases, 4,145 European ancestry controls		6p22.1	NR	rs7749944-?	0.006	8E-42		10.06	[7.2-14.1]	Illumina [~ 8000000] (imputed)	N
596	chr6_cox_hap2	1476545	1476546	rs12110437	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	76 Han Chinese ancestry cases, 889 Han Chinese ancestry controls	NA	6p22.1	HLA-G	rs12110437-?	NR	2E-10				Illumina [3403929] (imputed)	N
596	chr6_cox_hap2	1482305	1482306	rs7758512	20041166	Fellay J	2009-12-24	PLoS Genet	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	6p22.1	HLA-A, ZNRD1, RNF39	rs7758512-?	NR	2E-8	(progression)			Illumina [NR]	N
596	chr6_cox_hap2	1482677	1482678	rs3094146	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total concentration of lipoprotein particles	115,082 European ancestry individuals	NA	6p22.1		rs3094146-G	0.871463	2E-9		0.0352048	[0.024-0.047] unit increase	NR [11722792] (imputed)	N
596	chr6_cox_hap2	1482677	1482678	rs3094146	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Polyunsaturated fatty acid levels	115,006 European ancestry individuals	NA	6p22.1		rs3094146-G	0.871472	2E-13		0.0443955	[0.033-0.056] unit increase	NR [11722792] (imputed)	N
596	chr6_cox_hap2	1482677	1482678	rs3094146	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6p22.1		rs3094146-G	0.871463	1E-8		0.0355971	[0.023-0.048] unit decrease	NR [11722792] (imputed)	N
596	chr6_cox_hap2	1482677	1482678	rs3094146	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphoglycerides levels	115,006 European ancestry individuals	NA	6p22.1		rs3094146-G	0.871472	3E-10		0.0370038	[0.026-0.049] unit increase	NR [11722792] (imputed)	N
596	chr6_cox_hap2	1482677	1482678	rs3094146	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphatidylcholine levels	115,006 European ancestry individuals	NA	6p22.1		rs3094146-G	0.871472	3E-9		0.0343894	[0.023-0.046] unit increase	NR [11722792] (imputed)	N
596	chr6_cox_hap2	1482677	1482678	rs3094146	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	6p22.1		rs3094146-G	0.871463	5E-10		0.0351913	[0.024-0.046] unit increase	NR [11722792] (imputed)	N
596	chr6_cox_hap2	1482677	1482678	rs3094146	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium HDL particles	115,082 European ancestry individuals	NA	6p22.1		rs3094146-G	0.871463	2E-11		0.0384568	[0.027-0.05] unit increase	NR [11722792] (imputed)	N
596	chr6_cox_hap2	1482677	1482678	rs3094146	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of HDL particles	115,082 European ancestry individuals	NA	6p22.1		rs3094146-G	0.871463	4E-10		0.0365016	[0.025-0.048] unit increase	NR [11722792] (imputed)	N
596	chr6_cox_hap2	1482677	1482678	rs3094146	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	6p22.1		rs3094146-G	0.871463	2E-9		0.034562	[0.023-0.046] unit increase	NR [11722792] (imputed)	N
596	chr6_cox_hap2	1482677	1482678	rs3094146	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein A1 levels	115,082 European ancestry individuals	NA	6p22.1		rs3094146-G	0.871463	9E-11		0.036855	[0.026-0.048] unit increase	NR [11722792] (imputed)	N
596	chr6_cox_hap2	1482677	1482678	rs3094146	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p22.1	ZNRD1-AS1	rs3094146-C	NR	4E-10		0.0289428	[0.02-0.038] unit decrease	Affymetrix [323858] (imputed)	N
596	chr6_cox_hap2	1482677	1482678	rs3094146	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Help-seeking from a GP (without major depressive disorder symptoms)	8,632 British ancestry cases, 49,493 British ancestry controls	NA	6p22.1	NR	rs3094146-G	0.87	5E-8		1.1494253	[1.10-1.20]	NR [5276842] (imputed)	N
596	chr6_cox_hap2	1482677	1482678	rs3094146	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p22.1	NR	rs3094146-C	0.1057	7E-7	(EA)	0.0543	[0.033-0.076] unit decrease	Illumina [~ 11800000] (imputed)	N
596	chr6_cox_hap2	1485638	1485639	rs4313034	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p22.1		rs4313034-T	0.825373	2E-18		1.048594	[1.04-1.06]	Affymetrix, Illumina [9851866] (imputed)	N
596	chr6_cox_hap2	1485638	1485639	rs4313034	21900946	Nakabayashi K	2011-09-08	J Hum Genet	Identification of independent risk loci for Graves' disease within the MHC in the Japanese population.	Graves' disease	1,119 Japanese ancestry cases, 2,718 Japanese ancestry controls	432 Japanese ancestry cases, 1,157 Japanese ancestry controls	6p22.1	MHC	rs4313034-T	0.83	2E-15		1.67	[1.47-1.90]	Perlegen [268068]	N
596	chr6_cox_hap2	1489582	1489583	rs886997	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Asthma	13,015 East Asian ancestry cases, 162,933 East Asian ancestry controls	NA	6p22.1		rs886997-T	0.201391947	2E-10		0.10704092	[0.074-0.14] unit increase	Illumina [13429513] (imputed)	N
596	chr6_cox_hap2	1490065	1490066	rs4713281	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p22.1	HLA-J, NCRNA00171	rs4713281-A	0.28	1E-6	(EA)	1.97	[1.49-2.59]	Illumina [up to 547389]	N
596	chr6_cox_hap2	1498055	1498056	rs3115631	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	ZNRD1-AS1	rs3115631-A	NR	4E-17		0.0400652	[0.031-0.049] unit decrease	Affymetrix [323858] (imputed)	N
596	chr6_cox_hap2	1498055	1498056	rs3115631	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	ZNRD1-AS1	rs3115631-A	NR	2E-16		0.0390685	[0.03-0.048] unit decrease	Affymetrix [127266] (imputed)	N
596	chr6_cox_hap2	1498055	1498056	rs3115631	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Major depressive disorder (lifetime)	16,301 British ancestry cases, 50,870 British ancestry controls	NA	6p22.1	NR	rs3115631-?	NR	4E-7		1.1037527	[1.06-1.15]	NR [5276842] (imputed)	N
596	chr6_cox_hap2	1498055	1498056	rs3115631	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Help-seeking from a GP	113,262 British ancestry cases, 219,360 British ancestry controls	NA	6p22.1	NR	rs3115631-T	0.874	3E-13		1.059322	[1.04-1.08]	NR [5276842] (imputed)	N
596	chr6_cox_hap2	1513766	1513767	rs62388754	30850646	Tziotzios C	2019-03-08	Nat Commun	Genome-wide association study in frontal fibrosing alopecia identifies four susceptibility loci including HLA-B*07:02.	Frontal fibrosing alopecia	1,016 European ancestry cases, 4,145 European ancestry controls		6p22.1	NR	rs62388754-?	0.058	5E-32		2.76	[2.33-3.27]	Illumina [~ 8000000] (imputed)	N
596	chr6_cox_hap2	1517816	1517817	rs4711207	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Allergic rhinitis	4,387 European ancestry cases, 471,273 European ancestry controls, 7,897 East Asian ancestry cases, 153,666 East Asian ancestry controls	NA	6p22.1		rs4711207-A	NR	2E-8		0.087	[0.057-0.117] unit decrease	Affymetrix, Illumina [25843170] (imputed)	N
596	chr6_cox_hap2	1517816	1517817	rs4711207	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p22.1	NR	rs4711207-A	0.366	3E-19	(IFNAR2_of_CD20p)			Illumina [5084123] (imputed)	N
596	chr6_cox_hap2	1520815	1520816	rs3910312	35232999	Garcia-Etxebarria K	2022-03-01	Sci Rep	Local genetic variation of inflammatory bowel disease in Basque population and its effect in risk prediction.	Ulcerative colitis	208 European ancestry cases, 935 European ancestry controls	NA	6p22.1		rs3910312-C	0.255	7E-7		1.8		Illumina [5409651] (imputed)	N
596	chr6_cox_hap2	1525958	1525959	rs9261224	31217265	Sliz E	2019-06-19	J Med Genet	Genome-wide association study identifies seven novel loci associating with circulating cytokines and cell adhesion molecules in Finns.	Interleukin-1-beta levels	13,577 Finnish ancestry individuals	NA	6p22.1	HLA	rs9261224-T	0.035	1E-9		0.261	unit increase	Illumina [NR] (imputed)	N
596	chr6_cox_hap2	1529150	1529151	rs6917603	31217265	Sliz E	2019-06-19	J Med Genet	Genome-wide association study identifies seven novel loci associating with circulating cytokines and cell adhesion molecules in Finns.	Interleukin-1-beta levels	13,577 Finnish ancestry individuals	NA	6p22.1	HLA	rs6917603-C	0.251	2E-12		0.163	unit decrease	Illumina [NR] (imputed)	N
596	chr6_cox_hap2	1529150	1529151	rs6917603	22286219	Kettunen J	2012-01-29	Nat Genet	Genome-wide association study identifies multiple loci influencing human serum metabolite levels.	Lipid metabolism phenotypes	8,330 European ancestry individuals	NA	6p22.1	PPP1R11	rs6917603-?	NR	3E-29	(XXL-VLDL-P)	0.24	[0.2-0.28] unit decrease	Illumina [~ 7700000] (imputed)	N
596	chr6_cox_hap2	1535184	1535185	rs9261259	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	ZNRD1-AS1	rs9261259-C	NR	2E-16		0.0319539	[0.024-0.04] unit decrease	Affymetrix [127266] (imputed)	N
596	chr6_cox_hap2	1537608	1537609	rs259919	32276964	Shete S	2020-04-10	Cancer Res	A genome-wide association study identifies two novel susceptible regions for squamous cell carcinoma of the head and neck.	Head and neck squamous cell carcinoma	2,171 European ancestry cases, 4,493 European ancestry controls	5,205 European ancestry cases, 3,232 European ancestry controls	6p22.1	ZNRD1-AS1	rs259919-A	0.28	3E-9		1.17	[1.11-1.24]	Illumina [7858089] (imputed)	N
596	chr6_cox_hap2	1537608	1537609	rs259919	20041166	Fellay J	2009-12-24	PLoS Genet	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	6p22.1	ZNRD1, C6orf12	rs259919-?	NR	3E-7	(setpoint)			Illumina [NR]	N
596	chr6_cox_hap2	1542219	1542220	rs9261269	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p22.1	ZintergenicD1	rs9261269-A		4E-32		0.038	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
596	chr6_cox_hap2	1544621	1544622	rs8321	23453885	Smoller JW	2013-02-27	Lancet	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NA	6p22.1	MHC region	rs8321-?	NR	8E-9	(5 degree of freedom test)	1.081	[1.04-1.12]	NR [1252901] (imputed)	N
596	chr6_cox_hap2	1544621	1544622	rs8321	19115949	Limou S	2009-01-01	J Infect Dis	Genomewide association study of an AIDS-nonprogression cohort emphasizes the role played by HLA genes (ANRS Genomewide Association Study 02).	AIDS progression	275 European ancestry seropositive non-progressors, 86 European ancestry seropositive rapid progressors, 1,352 European ancestry seronegative controls	(see Fellay 2007)	6p22.1	ZNRD1, RNF39	rs8321-G	NR	5E-7				Illumina [291119]	N
596	chr6_cox_hap2	1547440	1547441	rs9261281	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p22.1		rs9261281-?	NR	1E-9		0.0377761	[0.026-0.05] unit increase	Affymetrix [20259828] (imputed)	N
596	chr6_cox_hap2	1550089	1550090	rs6539	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	6p22.1	NR	rs6539-?	NR	3E-6		0.0618	[0.036-0.088] unit increase	Illumina [at least 560000] (imputed)	N
596	chr6_cox_hap2	1551339	1551340	rs2301753	26534935	Weng L	2015-11-03	Physiol Genomics	Genetic loci associated with nonobstructive coronary artery disease in Caucasian women.	Nonobstructive coronary artery disease	332 European ancestry female cases, 1,003 European ancestry female controls	NA	6p22.1	RNF39	rs2301753-?	0.883	7E-7		2.5	[1.75-3.57]	Illumina [52371]	N
596	chr6_cox_hap2	1552390	1552391	rs10947050	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Chickenpox	107,769 European ancestry cases, 15,982 European ancestry controls	NA	6p22.1	NR	rs10947050-?	NR	1E-10		0.0904	[0.063-0.118] unit decrease	Illumina [at least 560000] (imputed)	N
596	chr6_cox_hap2	1555099	1555100	rs142979264	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs142979264-?		6E-8		1.06	[1.04-1.09]	Illumina [7645193] (imputed)	N
596	chr6_cox_hap2	1555099	1555100	rs142979264	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs142979264-?		7E-9		1.84	[1.50-2.26]	Illumina [7645193] (imputed)	N
596	chr6_cox_hap2	1556487	1556488	rs3132682	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	6p22.1	RNF39	rs3132682-C	0.5898	2E-30		0.04162196	[0.035-0.049] unit increase	Affymetrix [~ 2500000] (imputed)	N
596	chr6_cox_hap2	1557298	1557299	rs1150735	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	RNF39	rs1150735-A	NR	5E-8		5.462	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
596	chr6_cox_hap2	1558097	1558098	rs1245372	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of linoleic acid to total fatty acids	115,006 European ancestry individuals	NA	6p22.1		rs1245372-A	0.830801	3E-8		0.029543	[0.019-0.04] unit decrease	NR [11722792] (imputed)	N
596	chr6_cox_hap2	1565041	1565042	rs1264712	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	AL669914.1	rs1264712-A	NR	9E-17		0.0323321	[0.025-0.04] unit decrease	Affymetrix [323858] (imputed)	N
596	chr6_cox_hap2	1565041	1565042	rs1264712	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p22.1	AL669914.1	rs1264712-A	NR	4E-10		0.0241409	[0.017-0.032] unit decrease	Affymetrix [323858] (imputed)	N
596	chr6_cox_hap2	1567909	1567910	rs142292417	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	6p22.1		rs142292417-T	0.984003	1E-8		0.0906224	[0.059-0.122] unit increase	NR [11722792] (imputed)	N
596	chr6_cox_hap2	1572139	1572140	rs3132681	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p22.1		rs3132681-C	0.603	1E-38				Affymetrix [10369434] (imputed)	N
596	chr6_cox_hap2	1572139	1572140	rs3132681	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	ENSG00000252901	rs3132681-A	NR	2E-8		5.598	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
597	chr6_cox_hap2	1573460	1573461	rs9261387	28394258	Wild PS	2017-04-10	J Clin Invest	Large-scale genome-wide analysis identifies genetic variants associated with cardiac structure and function.	Isovolumetric relaxation time	21,852 European ancestry individuals	14,787 European ancestry individuals	6p22.1	TRIM31	rs9261387-C	0.92	7E-7		0.003	[0.001-0.005] unit increase	Affymetrix, Illumina [at least 283291] (imputed)	N
597	chr6_cox_hap2	1575780	1575781	rs1264705	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium HDL	115,082 European ancestry individuals	NA	6p22.1		rs1264705-G	0.868792	2E-12		0.0396576	[0.029-0.051] unit increase	NR [11722792] (imputed)	N
597	chr6_cox_hap2	1577258	1577259	rs1156533	33888516	Zheng T	2021-04-22	Gut	Genome-wide analysis of 944 133 individuals provides insights into the etiology of haemorrhoidal disease.	Haemorrhoidal disease	218,920 European ancestry cases, 725,213 European ancestry controls	NA	6p22.1	TRIM31	rs1156533-?	0.2952	2E-8		0.98	[0.97-0.98]	Affymetrix, Illumina [8494288] (imputed)	N
597	chr6_cox_hap2	1577652	1577653	rs17187854	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	6p22.1	intergenic	rs17187854-T	0.0032	3E-12		0.2201749	[0.16-0.28] unit decrease	Affymetrix [~ 2500000] (imputed)	N
597	chr6_cox_hap2	1578140	1578141	rs916570	31272903	Sunadome H	2019-07-01	Allergol Int	Correlation between eosinophil count, its genetic background and body mass index: The Nagahama Study.	Eosinophil counts	4,650 East Asian ancestry individuals	NA	6p22.1	NR	rs916570-G	0.19	1E-7		0.1384	NR unit increase	Illumina [103680] (imputed)	N
597	chr6_cox_hap2	1578140	1578141	rs916570	31272903	Sunadome H	2019-07-01	Allergol Int	Correlation between eosinophil count, its genetic background and body mass index: The Nagahama Study.	Eosinophil counts	4,206 East Asian ancestry individuals	NA	6p22.1	NR	rs916570-G	0.19	3E-7		0.1428	NR unit increase	Illumina [103680] (imputed)	N
597	chr6_cox_hap2	1579115	1579117	rs143211693	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	6p22.1	Intergenic	rs143211693-?	NR	5E-6		0.0195207	[0.011-0.028] unit increase	Illumina [13519193] (imputed)	N
597	chr6_cox_hap2	1579115	1579117	rs143211693	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p22.1	Intergenic	rs143211693-?	NR	2E-6		0.0186889	[0.011-0.026] unit increase	Illumina [13520550] (imputed)	N
597	chr6_cox_hap2	1579115	1579117	rs143211693	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	6p22.1	Intergenic	rs143211693-?	NR	4E-9		0.026814	[0.018-0.036] unit increase	Illumina [13520550] (imputed)	N
597	chr6_cox_hap2	1579689	1579690	rs1264697	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	76 Han Chinese ancestry cases, 889 Han Chinese ancestry controls	NA	6p22.1	TRIM31	rs1264697-?	NR	1E-8	(conditional on rs12110437)			Illumina [3403929] (imputed)	N
597	chr6_cox_hap2	1580734	1580735	rs13214608	33831438	Williams JE	2021-04-05	Genomics	Key genetic variants associated with variation of milk oligosaccharides from diverse human populations.	Human milk oligosaccharide concentration (lacto-N-fucopentaose III) in non-secretors	90 European, Sub-Saharan African, Hispanic or unknown ancestry individuals	NA	6p22.1		rs13214608-?	NR	3E-11				Illumina [1128286]	N
597	chr6_cox_hap2	1582102	1582103	rs1111180	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	6p22.1	TRIM31-AS1	rs1111180-C	0.5667	4E-37		0.04561007	[0.039-0.053] unit decrease	Affymetrix [~ 2500000] (imputed)	N
597	chr6_cox_hap2	1582102	1582103	rs1111180	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	6p22.1	TRIM31-AS1	rs1111180-C	0.5666	2E-35		0.04474978	[0.038-0.052] unit decrease	Affymetrix [~ 2500000] (imputed)	N
597	chr6_cox_hap2	1583058	1583059	rs1110446	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6p22.1		rs1110446-?	NR	3E-6		1.05914	[1.04-1.08]	NR [685523]	N
597	chr6_cox_hap2	1583058	1583059	rs1110446	29784950	Sawai H	2018-05-21	Sci Rep	Genome-wide association study identified new susceptible genetic variants in HLA class I region for hepatitis B virus-related hepatocellular carcinoma.	Hepatocellular carcinoma in hepatitis B infection	473 Japanese ancestry chronic hepatitis and hepatocellular carcinoma cases, 516 Japanese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma	153 Japanese ancestry chronic hepatitis and hepatocellular carcinoma cases, 614 Japanese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma, 94 Chinese ancestry chronic hepatitis and hepatocellular carcinoma cases, 187 Chinese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma, 185 Thai ancestry chronic hepatitis and hepatocellular carcinoma cases, 198 Thai ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma	6p22.1	HLA	rs1110446-?	NR	9E-13		1.93	[1.57-2.37] Japanese	Affymetrix [447830]	N
597	chr6_cox_hap2	1583058	1583059	rs1110446	29784950	Sawai H	2018-05-21	Sci Rep	Genome-wide association study identified new susceptible genetic variants in HLA class I region for hepatitis B virus-related hepatocellular carcinoma.	Hepatocellular carcinoma in hepatitis B infection	473 Japanese ancestry chronic hepatitis and hepatocellular carcinoma cases, 516 Japanese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma	153 Japanese ancestry chronic hepatitis and hepatocellular carcinoma cases, 614 Japanese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma, 94 Chinese ancestry chronic hepatitis and hepatocellular carcinoma cases, 187 Chinese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma, 185 Thai ancestry chronic hepatitis and hepatocellular carcinoma cases, 198 Thai ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma	6p22.1	HLA	rs1110446-?	NR	3E-10	(Japanese)	1.93	[1.57-2.37]	Affymetrix [447830]	N
597	chr6_cox_hap2	1583451	1583452	rs1116221	32771030	Tangtanatakul P	2020-08-08	Arthritis Res Ther	Meta-analysis of genome-wide association study identifies FBN2 as a novel locus associated with systemic lupus erythematosus in Thai population.	Systemic lupus erythematosus	487 Thai cases, 1,606 Thai controls	405 Thai cases, 1,590 Thai controls	6p22.1	TRIM31	rs1116221-A	0.08	3E-6		1.594	[NR]	Illumina [421909] (imputed)	N
597	chr6_cox_hap2	1584746	1584747	rs3094136	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p22.1	NR	rs3094136-C	0.44	2E-6	(IFNAR2_of_CD4p_T)			Illumina [5084123] (imputed)	N
597	chr6_cox_hap2	1584929	1584930	rs111537560	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mumps	31,227 European ancestry cases, 54,153 European ancestry controls	NA	6p22.1	NR	rs111537560-?	NR	5E-16		0.5917	[0.45-0.74] unit increase	Illumina [at least 560000] (imputed)	N
597	chr6_cox_hap2	1585316	1585317	rs3132680	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6p22.1	RNF39	rs3132680-?	NR	7E-6	(SM 18:0)	0.17183183	[0.097-0.247] unit decrease	Affymetrix [at least 2500000] (imputed)	N
597	chr6_cox_hap2	1585380	1585381	rs2517664	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p22.1		rs2517664-T	0.816537	9E-13		1.0407012	[1.03-1.05]	Affymetrix, Illumina [9851866] (imputed)	N
597	chr6_cox_hap2	1585380	1585381	rs2517664	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	TRIM31-AS1	rs2517664-T	NR	1E-8		5.707	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
597	chr6_cox_hap2	1585551	1585552	rs6915823	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	6p22.1	NR	rs6915823-?	NR	1E-23		10.046	NR z score decrease	Illumina [at least 830937] (imputed)	N
597	chr6_cox_hap2	1585897	1585898	rs7767188	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	6p22.1	NR	rs7767188-A	0.21	2E-8		1.06	[1.04-1.08]	Illumina [20370935] (imputed)	N
597	chr6_cox_hap2	1585968	1585969	rs2844795	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total phospholipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	6p22.1		rs2844795-C	0.480583	2E-9		0.0234643	[0.016-0.031] unit decrease	NR [11722792] (imputed)	N
597	chr6_cox_hap2	1585968	1585969	rs2844795	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	6p22.1		rs2844795-C	0.480583	2E-9		0.0242799	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
597	chr6_cox_hap2	1585968	1585969	rs2844795	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total fatty acid levels	115,006 European ancestry individuals	NA	6p22.1		rs2844795-C	0.480588	2E-9		0.0242374	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
597	chr6_cox_hap2	1585968	1585969	rs2844795	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholines levels	115,006 European ancestry individuals	NA	6p22.1		rs2844795-C	0.480588	6E-9		0.0224748	[0.015-0.03] unit decrease	NR [11722792] (imputed)	N
597	chr6_cox_hap2	1585968	1585969	rs2844795	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-6 fatty acid levels	115,006 European ancestry individuals	NA	6p22.1		rs2844795-C	0.480588	5E-13		0.0289827	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
597	chr6_cox_hap2	1585968	1585969	rs2844795	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Linoleic acid levels	115,006 European ancestry individuals	NA	6p22.1		rs2844795-C	0.480588	4E-14		0.0305085	[0.023-0.038] unit decrease	NR [11722792] (imputed)	N
597	chr6_cox_hap2	1585968	1585969	rs2844795	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	6p22.1		rs2844795-C	0.480583	3E-8		0.0227871	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
597	chr6_cox_hap2	1586193	1586194	rs2517601	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in diabetes	70,762 European ancestry individuals, 20,967 African American individuals	NA	6p22.1	TRIM31	rs2517601-C	0.115	4E-12		0.956	[0.69-1.23] unit decrease	Affymetrix [NR] (imputed)	N
597	chr6_cox_hap2	1586193	1586194	rs2517601	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p22.1	NR	rs2517601-C	0.1326	5E-13		0.0126	[0.0093-0.0159] unit decrease	NR [7666894] (imputed)	N
597	chr6_cox_hap2	1586431	1586432	rs78026509	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	6p22.1	TRIM31, TRIM31-AS1	rs78026509-G	0.0759	2E-9		0.04028003	[0.027-0.053] unit decrease	Affymetrix [~ 2500000] (imputed)	N
597	chr6_cox_hap2	1587224	1587225	rs2523992	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p22.1	NR	rs2523992-G	0.1571	2E-7	(EA)	0.0468	[0.029-0.064] unit decrease	Illumina [~ 11800000] (imputed)	N
597	chr6_cox_hap2	1587986	1587987	rs2023472	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p22.1		rs2023472-A	0.411	6E-25				Affymetrix [10369434] (imputed)	N
597	chr6_cox_hap2	1587986	1587987	rs2023472	23417110	Tin A	2013-02-16	Hum Genet	Genome-wide association study identified the human leukocyte antigen region as a novel locus for plasma beta-2 microglobulin.	Beta-2 microglubulin plasma levels	6,728 European ancestry individuals		6p22.1	TRIM31	rs2023472-A	0.38	3E-15		0.03	[0.022-0.038] unit increase	Affymetrix [2500000] (imputed)	N
597	chr6_cox_hap2	1588239	1588240	rs11961190	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	6p22.1	TRIM31, TRIM31-AS1	rs11961190-T	0.00312500000000004	2E-22		0.19694449	[0.16-0.24] unit decrease	Affymetrix [93095623] (imputed)	N
597	chr6_cox_hap2	1588239	1588240	rs11961190	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6p22.1	TRIM31, TRIM31-AS1	rs11961190-T	0.00312500000000004	1E-23		0.20271449	[0.16-0.24] unit decrease	Affymetrix [93095623] (imputed)	N
597	chr6_cox_hap2	1588239	1588240	rs11961190	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	6p22.1	TRIM31, TRIM31-AS1	rs11961190-T	0.00311799999999995	3E-29		0.22552978	[0.19-0.26] unit decrease	Affymetrix [93095623] (imputed)	N
597	chr6_cox_hap2	1588239	1588240	rs11961190	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6p22.1	TRIM31, TRIM31-AS1	rs11961190-T	0.00311700000000004	4E-27		0.21662813	[0.18-0.26] unit decrease	Affymetrix [93095623] (imputed)	N
597	chr6_cox_hap2	1588777	1588778	rs9261418	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	6p22.1	TRIM15	rs9261418-A	0.144604	2E-8		5.61	z score increase	NR [10847151] (imputed)	N
597	chr6_cox_hap2	1589253	1589254	rs9378220	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	6p22.1	TRIM31	rs9378220-?	NR	4E-18		0.0309	[0.025-0.037] unit increase	Affymetrix [5701386] (imputed)	N
597	chr6_cox_hap2	1589347	1589348	rs2523990	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	6p22.1	TRIM31, TRIM31-AS1	rs2523990-G	0.538375	2E-32		0.029605733	[0.025-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
597	chr6_cox_hap2	1589347	1589348	rs2523990	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6p22.1	TRIM31, TRIM31-AS1	rs2523990-G	0.538376	5E-71		0.044279587	[0.039-0.049] unit decrease	Affymetrix [93095623] (imputed)	N
597	chr6_cox_hap2	1590395	1590396	rs2523989	33909500	Moll M	2021-04-28	Am J Physiol Lung Cell Mol Physiol	A Systematic Analysis of Protein-altering Exonic Variants in Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease	up to 31,465 European ancestry cases, up to 203,688 European ancestry controls, up to 1,413 African ancestry cases, up to 6,080 African ancestry controls, up to 287 East Asian ancestry cases, up to 7,484 East Asian ancestry controls, up to 61 Hispanic cases, up to 613 Hispanic controls	NA	6p22.1	TRIM31	rs2523989-T	0.17	1E-10		1.09	[1.06 -1.12]	Illumina [at least 109036]	N
597	chr6_cox_hap2	1590395	1590396	rs2523989	25936594	Tomer Y	2015-04-27	J Autoimmun	Genome wide identification of new genes and pathways in patients with both autoimmune thyroiditis and type 1 diabetes.	Type 1 diabetes and autoimmune thyroid diseases	346 European ancestry cases, 727 European ancestry controls	185 European ancestry cases, 340 European ancestry controls	6p22.1	TRIM31	rs2523989-A	NR	2E-8		1.7499		Illumina [514008]	N
597	chr6_cox_hap2	1592124	1592125	rs2523987	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p22.1	TRIM31, TRIM31-AS1, TRIM40, SNORA48	rs2523987-C	0.1149598	2E-13	(EA, MHC class I polypeptide-related sequence A)	0.4957	[0.36-0.63] unit increase	Affymetrix [509946]	N
597	chr6_cox_hap2	1593235	1593236	rs9261425	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	6p22.1	NR	rs9261425-?	NR	6E-7		0.0545	[0.033-0.076] unit increase	Illumina [at least 560000] (imputed)	N
597	chr6_cox_hap2	1593869	1593870	rs28780084	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p22.1	NR	rs28780084-?	NR	9E-8		0.0841	[0.053-0.115] unit decrease	Illumina [at least 560000] (imputed)	N
597	chr6_cox_hap2	1595835	1595836	rs2523978	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	6p22.1	TRIM31	rs2523978-C	0.869967	4E-24		0.0286531	[0.023-0.034] unit increase	Affymetrix [NR] (imputed)	N
597	chr6_cox_hap2	1595835	1595836	rs2523978	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	6p22.1	TRIM31	rs2523978-C	0.869885	7E-28		0.031888	[0.026-0.038] unit increase	Affymetrix [NR] (imputed)	N
597	chr6_cox_hap2	1598558	1598559	rs9261431	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p22.1	NR	rs9261431-?	NR	2E-19		0.1221	[0.095-0.149] unit increase	Illumina [at least 560000] (imputed)	N
597	chr6_cox_hap2	1599741	1599742	rs115254023	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6p22.1		rs115254023-T	0.018886	8E-29		0.092888236	[0.077-0.109] unit increase	Affymetrix [93095623] (imputed)	N
597	chr6_cox_hap2	1605069	1605070	rs1419674	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p22.1	NR	rs1419674-T	0.02787	7E-9	(SBDS)	0.03953	NR unit increase	Illumina [1671387] (imputed)	N
597	chr6_cox_hap2	1605271	1605272	rs2517592	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	SNORA48	rs2517592-T	NR	5E-8		5.465	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
597	chr6_cox_hap2	1605498	1605499	rs10947055	21348951	Parsa A	2011-02-01	Clin Transl Sci	Hypertrophy-associated polymorphisms ascertained in a founder cohort applied to heart failure risk and mortality.	Cardiac hypertrophy	851 Old Order Amish individuals	NA	6p22.1	TRIM38	rs10947055-?	NR	2E-7	(additive, recessive)			Affymetrix [361034]	N
597	chr6_cox_hap2	1606247	1606248	rs2844790	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	SNORA48	rs2844790-C	NR	4E-10		6.271	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
597	chr6_cox_hap2	1606247	1606248	rs2844790	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p22.1	NR	rs2844790-?	NR	1E-8		0.1888	[0.12-0.25] unit increase	Illumina [at least 560000] (imputed)	N
597	chr6_cox_hap2	1613108	1613109	rs61211515	29404672	Roshandel D	2018-02-05	Diabetologia	Meta-genome-wide association studies identify a locus on chromosome 1 and multiple variants in the MHC region for serum C-peptide in type 1 diabetes.	Stimulated C-peptide levels in type I diabetes	1,303 European ancestry individuals	NA	6p22.1	MHC	rs61211515-?	0.16	1E-7		0.39	[0.25-0.53] unit decrease	Illumina [8978838] (imputed)	N
597	chr6_cox_hap2	1613108	1613109	rs61211515	29404672	Roshandel D	2018-02-05	Diabetologia	Meta-genome-wide association studies identify a locus on chromosome 1 and multiple variants in the MHC region for serum C-peptide in type 1 diabetes.	C-peptide levels in type I diabetes	3,479 European ancestry individuals	NA	6p22.1	MHC	rs61211515-?	0.16	2E-6				Illumina [7988630] (imputed)	N
597	chr6_cox_hap2	1613697	1613698	rs115333019	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	6p22.1	SNORA48, TRIM40	rs115333019-G	0.00916799999999995	8E-43		0.1634603	[0.14-0.19] unit decrease	Affymetrix [93095623] (imputed)	N
597	chr6_cox_hap2	1613788	1613789	rs1362104	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	SNORA48	rs1362104-A	NR	2E-10		6.398	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
597	chr6_cox_hap2	1617287	1617288	rs28780086	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	6p22.1	TRIM40	rs28780086-G	0.023328	1E-25		0.078185886	[0.064-0.093] unit increase	Affymetrix [93095623] (imputed)	N
597	chr6_cox_hap2	1617287	1617288	rs28780086	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	6p22.1	TRIM40	rs28780086-G	0.023332	8E-30		0.093978085	[0.078-0.11] unit decrease	Affymetrix [93095623] (imputed)	N
597	chr6_cox_hap2	1620818	1620819	rs9261484	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	6p22.1	TRIM40	rs9261484-T	0.2451	2E-8		0.0635	[0.042-0.085] unit decrease	NR [7784415] (imputed)	N
597	chr6_cox_hap2	1622994	1622994	rs146464922	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	6p22.1	TRIM40	rs146464922-CTT	0.014425	8E-11		0.05988576	[0.042-0.078] unit increase	Affymetrix [93095623] (imputed)	N
597	chr6_cox_hap2	1623206	1623207	rs117432766	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6p22.1	TRIM40	rs117432766-A	0.016714	1E-25		0.09170394	[0.075-0.109] unit increase	Affymetrix [93095623] (imputed)	N
597	chr6_cox_hap2	1625686	1625687	rs12202131	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6p22.1	TRIM40	rs12202131-A	0.052983	2E-12		0.06297606	[0.045-0.081] unit increase	Affymetrix [93095623] (imputed)	N
597	chr6_cox_hap2	1626091	1626092	rs3815082	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p22.1	NR	rs3815082-G	0.295	9E-12	(IFNAR2_of_CD20p)			Illumina [5084123] (imputed)	N
597	chr6_cox_hap2	1626443	1626444	rs2256146	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p22.1	NR	rs2256146-C	0.02787	7E-9	(SBDS)	0.03953	NR unit increase	Illumina [1671387] (imputed)	N
597	chr6_cox_hap2	1627456	1627457	rs115651142	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p22.1	NR	rs115651142-?	NR	6E-7		0.324	[0.19-0.45] unit decrease	Illumina [at least 560000] (imputed)	N
597	chr6_cox_hap2	1632026	1632027	rs9468692	20041166	Fellay J	2009-12-24	PLoS Genet	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	6p22.1	TRIM10	rs9468692-?	NR	1E-6	(setpoint)			Illumina [NR]	N
597	chr6_cox_hap2	1632773	1632774	rs9468693	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	6p22.1	TRIM10	rs9468693-C	0.071694	2E-29		0.0510031	[0.043-0.059] unit decrease	Affymetrix [93095623] (imputed)	N
597	chr6_cox_hap2	1633596	1633597	rs2022065	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	6p22.1	TRIM10	rs2022065-T	0.296544	2E-49		0.041531093	[0.036-0.047] unit decrease	Affymetrix [93095623] (imputed)	N
597	chr6_cox_hap2	1633596	1633597	rs2022065	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6p22.1	TRIM10	rs2022065-T	0.296544	4E-41		0.041549113	[0.035-0.048] unit decrease	Affymetrix [93095623] (imputed)	N
597	chr6_cox_hap2	1633596	1633597	rs2022065	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	6p22.1	TRIM10	rs2022065-T	0.296537	4E-62		0.05393633	[0.048-0.06] unit decrease	Affymetrix [93095623] (imputed)	N
597	chr6_cox_hap2	1633596	1633597	rs2022065	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	6p22.1	TRIM10	rs2022065-T	0.2963	3E-25		0.04064069	[0.033-0.048] unit decrease	Affymetrix [~ 2500000] (imputed)	N
597	chr6_cox_hap2	1633596	1633597	rs2022065	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	6p22.1	TRIM10	rs2022065-T	0.2963	1E-23		0.03931364	[0.032-0.047] unit decrease	Affymetrix [~ 2500000] (imputed)	N
597	chr6_cox_hap2	1633596	1633597	rs2022065	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	6p22.1	TRIM10	rs2022065-T	0.2963	3E-30		0.04433495	[0.037-0.052] unit decrease	Affymetrix [~ 2500000] (imputed)	N
597	chr6_cox_hap2	1633596	1633597	rs2022065	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	6p22.1	TRIM10	rs2022065-T	0.2962	2E-35		0.04860256	[0.041-0.056] unit decrease	Affymetrix [~ 2500000] (imputed)	N
597	chr6_cox_hap2	1633596	1633597	rs2022065	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	6p22.1	TRIM10	rs2022065-T	0.2962	1E-34		0.04804721	[0.04-0.056] unit decrease	Affymetrix [~ 2500000] (imputed)	N
597	chr6_cox_hap2	1634529	1634530	rs116596081	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	6p22.1	TRIM10	rs116596081-A	0.011844	3E-46		0.14981039	[0.13-0.17] unit decrease	Affymetrix [93095623] (imputed)	N
597	chr6_cox_hap2	1634529	1634530	rs116596081	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6p22.1	TRIM10	rs116596081-A	0.0118470000000001	6E-38		0.13759963	[0.12-0.16] unit decrease	Affymetrix [93095623] (imputed)	N
597	chr6_cox_hap2	1636947	1636948	rs144731721	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Red cell distribution width	441,263 European ancestry individuals	NA	6p22.1		rs144731721-?	NR	1E-14		0.080611	[0.059-0.102] unit increase	NR [9800000] (imputed)	N
597	chr6_cox_hap2	1636947	1636948	rs144731721	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean reticulocyte volume	436,944 European ancestry individuals	NA	6p22.1		rs144731721-?	NR	1E-42		0.142474	[0.12-0.16] unit increase	NR [9800000] (imputed)	N
597	chr6_cox_hap2	1636947	1636948	rs144731721	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	6p22.1	TRIM10	rs144731721-T	0.00866500000000004	5E-16		0.096417926	[0.073-0.12] unit increase	Affymetrix [93095623] (imputed)	N
597	chr6_cox_hap2	1636947	1636948	rs144731721	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	6p22.1	TRIM10	rs144731721-T	0.00867700000000005	2E-39		0.15744652	[0.13-0.18] unit increase	Affymetrix [93095623] (imputed)	N
597	chr6_cox_hap2	1636947	1636948	rs144731721	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	6p22.1	TRIM10	rs144731721-T	0.00866699999999998	6E-12		0.083550446	[0.06-0.107] unit increase	Affymetrix [93095623] (imputed)	N
597	chr6_cox_hap2	1636947	1636948	rs144731721	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	6p22.1	TRIM10	rs144731721-T	0.0068	4E-11		0.1617919	[0.11-0.21] unit increase	Affymetrix [~ 2500000] (imputed)	N
597	chr6_cox_hap2	1638756	1638757	rs116113631	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	6p22.1	TRIM10	rs116113631-T	0.010294	3E-68		0.19197759	[0.17-0.21] unit decrease	Affymetrix [93095623] (imputed)	N
597	chr6_cox_hap2	1638756	1638757	rs116113631	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6p22.1	TRIM10	rs116113631-T	0.010297	3E-66		0.19043158	[0.17-0.21] unit decrease	Affymetrix [93095623] (imputed)	N
597	chr6_cox_hap2	1639693	1639693	rs148280884	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	6p22.1	TRIM10	rs148280884-CAT	0.0122	4E-25		0.1718773	[0.14-0.2] unit decrease	Affymetrix [~ 2500000] (imputed)	N
597	chr6_cox_hap2	1639693	1639693	rs148280884	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	6p22.1	TRIM10	rs148280884-CAT	0.0122	2E-27		0.1797411	[0.15-0.21] unit decrease	Affymetrix [~ 2500000] (imputed)	N
597	chr6_cox_hap2	1639693	1639693	rs148280884	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	6p22.1	TRIM10	rs148280884-CAT	0.0122	2E-23		0.1655507	[0.13-0.2] unit decrease	Affymetrix [~ 2500000] (imputed)	N
597	chr6_cox_hap2	1639693	1639693	rs148280884	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	6p22.1	TRIM10	rs148280884-CAT	0.0122	6E-25		0.1707215	[0.14-0.2] unit decrease	Affymetrix [~ 2500000] (imputed)	N
597	chr6_cox_hap2	1639939	1639940	rs1573296	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	6p22.1	TRIM10	rs1573296-G	0.1349	2E-11		0.03526502	[0.025-0.046] unit decrease	Affymetrix [~ 2500000] (imputed)	N
597	chr6_cox_hap2	1639939	1639940	rs1573296	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	6p22.1	TRIM10	rs1573296-G	0.1349	1E-14		0.04046172	[0.03-0.051] unit decrease	Affymetrix [~ 2500000] (imputed)	N
597	chr6_cox_hap2	1640007	1640008	rs1318638	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	6p22.1	TRIM10	rs1318638-T	0.0648	3E-9		0.04268956	[0.029-0.057] unit increase	Affymetrix [~ 2500000] (imputed)	N
597	chr6_cox_hap2	1640007	1640008	rs1318638	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin concentration	172,851 European ancestry individuals	NA	6p22.1	TRIM10	rs1318638-T	0.0649	1E-20		0.06542649	[0.052-0.079] unit decrease	Affymetrix [~ 2500000] (imputed)	N
597	chr6_cox_hap2	1640237	1640238	rs142460927	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	6p22.1	TRIM10	rs142460927-C	0.00303299999999995	5E-25		0.21333578	[0.17-0.25] unit decrease	Affymetrix [93095623] (imputed)	N
597	chr6_cox_hap2	1640576	1640577	rs12212092	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	6p22.1	TRIM10	rs12212092-T	0.0644400000000001	6E-20		0.043098915	[0.034-0.052] unit decrease	Affymetrix [93095623] (imputed)	N
597	chr6_cox_hap2	1640576	1640577	rs12212092	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	6p22.1	TRIM10	rs12212092-T	0.06443	7E-84		0.096261576	[0.087-0.106] unit decrease	Affymetrix [93095623] (imputed)	N
597	chr6_cox_hap2	1640576	1640577	rs12212092	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	6p22.1	TRIM10	rs12212092-T	0.064469	1E-29		0.051481474	[0.043-0.06] unit decrease	Affymetrix [93095623] (imputed)	N
597	chr6_cox_hap2	1640576	1640577	rs12212092	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6p22.1	TRIM10	rs12212092-T	0.064468	1E-30		0.09085926	[0.075-0.106] unit decrease	Affymetrix [93095623] (imputed)	N
597	chr6_cox_hap2	1640576	1640577	rs12212092	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	6p22.1	TRIM10	rs12212092-T	0.0648	1E-24		0.07379727	[0.06-0.088] unit decrease	Affymetrix [~ 2500000] (imputed)	N
597	chr6_cox_hap2	1640576	1640577	rs12212092	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	6p22.1	TRIM10	rs12212092-T	0.0648	8E-24		0.07307307	[0.059-0.087] unit decrease	Affymetrix [~ 2500000] (imputed)	N
597	chr6_cox_hap2	1640576	1640577	rs12212092	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	6p22.1	TRIM10	rs12212092-T	0.0648	3E-24		0.07368067	[0.059-0.088] unit decrease	Affymetrix [~ 2500000] (imputed)	N
597	chr6_cox_hap2	1643249	1643250	rs17188113	29562276	Venkateswaran S	2018-03-01	Inflamm Bowel Dis	Enhanced Contribution of HLA in Pediatric Onset Ulcerative Colitis.	Childhood onset ulcerative colitis	466 European ancestry cases, 2,099 European ancestry controls	NA	6p22.1	HLA	rs17188113-?		9E-7		1.8086454	[1.57-2.05]	Affymetrix [3996700] (imputed)	N
597	chr6_cox_hap2	1643837	1643838	rs17194474	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	6p22.1	TRIM15	rs17194474-C	0.028724	4E-18		0.055055395	[0.043-0.067] unit decrease	Affymetrix [93095623] (imputed)	N
597	chr6_cox_hap2	1648103	1648104	rs9368624	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p22.1	TRIM15, TRIM10, TRIM40, TRIM31-AS1, TRIM31, TRIM26, PAIP1P1	rs9368624-A	0.1996982	3E-11	(EA, MHC class I polypeptide-related sequence A)	0.3704	[0.26-0.48] unit decrease	Affymetrix [509946]	N
597	chr6_cox_hap2	1649775	1649776	rs1018846	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	6p22.1	TRIM15	rs1018846-A	0.064503	4E-25		0.046360865	[0.038-0.055] unit increase	Affymetrix [93095623] (imputed)	N
597	chr6_cox_hap2	1649992	1649993	rs2107195	30037793	Haapasalo K	2018-09-21	Infect Immun	The Psoriasis Risk Allele <i>HLA-C*06:02</i> Shows Evidence of Association with Chronic or Recurrent Streptococcal Tonsillitis.	Tonsillitis	95 Finnish cases, 504 Finnish controls	NA	6p22.1	TRIM10, TRIM15	rs2107195-?		5E-6		3.7		Illumina [100000]	N
597	chr6_cox_hap2	1650288	1650289	rs1029239	34642315	Ferreiro-Iglesias A	2021-10-12	Nat Commun	Germline determinants of humoral immune response to HPV-16 protect against oropharyngeal cancer.	Human papilloma virus 16 positive oropharyngeal cancer	1,078 European ancestry cases, 5,256 European ancestry controls	NA	6p22.1		rs1029239-G	NR	3E-6		1.2904		Illumina [7574753] (imputed)	N
597	chr6_cox_hap2	1650771	1650772	rs1029238	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	6p22.1	TRIM15	rs1029238-A	0.089377	4E-11		0.025450304	[0.018-0.033] unit increase	Affymetrix [93095623] (imputed)	N
597	chr6_cox_hap2	1651825	1651826	rs929156	33909500	Moll M	2021-04-28	Am J Physiol Lung Cell Mol Physiol	A Systematic Analysis of Protein-altering Exonic Variants in Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease	up to 31,465 European ancestry cases, up to 203,688 European ancestry controls, up to 1,413 African ancestry cases, up to 6,080 African ancestry controls, up to 287 East Asian ancestry cases, up to 7,484 East Asian ancestry controls, up to 61 Hispanic cases, up to 613 Hispanic controls	NA	6p22.1	TRIM15	rs929156-G	0.76	8E-8		1.06	[1.04 -1.09]	Illumina [at least 109036]	N
597	chr6_cox_hap2	1665471	1665472	rs2106072	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p22.1	NR	rs2106072-A	0.13	3E-10		1.11	[1.08-1.15]	Affymetrix [9886854] (imputed)	N
597	chr6_cox_hap2	1665471	1665472	rs2106072	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p22.1	NR	rs2106072-A	0.13	9E-13			[NR]	Affymetrix [9886854] (imputed)	N
597	chr6_cox_hap2	1665471	1665472	rs2106072	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in non-current smokers	16,488 European ancestry cases, 169,688 European ancestry controls	NA	6p22.1	NR	rs2106072-A	0.13	3E-10		1.12	[1.08-1.15]	Affymetrix [9886854] (imputed)	N
597	chr6_cox_hap2	1667257	1667258	rs2517622	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Proheparin-binding EGF-like growth factor levels	21,758 European ancestry individuals	9,173 individuals	6p22.1		rs2517622-C	0.11	1E-9		0.0845	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
597	chr6_cox_hap2	1667257	1667258	rs2517622	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Help-seeking from a psychiatrist	36,286 British ancestry cases, 297,126 British ancestry controls	NA	6p22.1	NR	rs2517622-G	0.863	4E-11		1.0799136	NR	NR [5276842] (imputed)	N
597	chr6_cox_hap2	1667257	1667258	rs2517622	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Help-seeking from a GP (without major depressive disorder symptoms)	8,632 British ancestry cases, 49,493 British ancestry controls	NA	6p22.1	NR	rs2517622-?	NR	3E-6		1.1223345	[1.07-1.18]	NR [5276842] (imputed)	N
597	chr6_cox_hap2	1677373	1677374	rs2523722	22883433	Irish Schizophrenia Genomics Consortium and the Wellcome Trust Case Control Consortium 2	2012-08-07	Biol Psychiatry	Genome-wide association study implicates HLA-C*01:02 as a risk factor at the major histocompatibility complex locus in schizophrenia.	Schizophrenia	1,606 European ancestry cases, 1,794 European ancestry controls	13,195 European ancestry cases, 31,021 European ancestry controls	6p22.1	MHC, TRIM26	rs2523722-G	0.737	1E-16		1.25	[1.12-1.39]	Affymetrix [6212339]	N
597	chr6_cox_hap2	1678986	1678987	rs2523720	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p22.1		rs2523720-C	0.836	9E-50				Affymetrix [10369434] (imputed)	N
597	chr6_cox_hap2	1679933	1679934	rs2428503	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	TRIM26	rs2428503-T	NR	2E-9		0.0221273	[0.015-0.029] unit decrease	Affymetrix [127266] (imputed)	N
597	chr6_cox_hap2	1680417	1680418	rs2523719	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	6p22.1	TRIM26	rs2523719-G	0.830078	2E-21		0.0245541	[0.019-0.03] unit increase	Affymetrix [NR] (imputed)	N
597	chr6_cox_hap2	1681425	1681426	rs2517611	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (anti-inflammatory and antirheumatic products, non-steroids)	74,150 European ancestry cases, 90,370 European ancestry controls, 29,694 East Asian ancestry cases, 149,032 East Asian ancestry controls	NA	6p22.1		rs2517611-G	NR	2E-9		0.0422	[0.028-0.056] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
597	chr6_cox_hap2	1681425	1681426	rs2517611	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Asthma	38,369 European ancestry cases, 411,131 European ancestry controls, 13,015 East Asian ancestry cases, 162,933 East Asian ancestry controls	NA	6p22.1		rs2517611-G	NR	3E-11		0.0613	[0.043-0.079] unit increase	Affymetrix, Illumina [25837673] (imputed)	N
597	chr6_cox_hap2	1681425	1681426	rs2517611	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (anti-inflammatory and antirheumatic products, non-steroids)	74,150 European ancestry cases, 90,370 European ancestry controls	NA	6p22.1	TRIM26	rs2517611-G	0.229963	7E-10		0.050484303	[0.034-0.067] unit decrease	Affymetrix [7288503] (imputed)	N
597	chr6_cox_hap2	1682607	1682608	rs1117490	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (childhood onset)	9,433 British ancestry cases, 318,237 British ancestry controls	NA	6p22.1	TRIM26, TRIM15, TRIM39	rs1117490-C	0.234	3E-8		1.1	[1.063-1.137]	Affymetrix [10894596] (imputed)	N
597	chr6_cox_hap2	1682607	1682608	rs1117490	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (adult onset)	21,564 British ancestry cases, 318,237 British ancestry controls	NA	6p22.1	TRIM26, TRIM15, TRIM39	rs1117490-C	0.234	7E-7		1.059	[1.036-1.084]	Affymetrix [10894596] (imputed)	N
597	chr6_cox_hap2	1691523	1691524	rs2844775	24489884	Mick E	2014-01-01	PLoS One	Genome-wide association study of proneness to anger.	Anger	8,747 European ancestry individuals	NA	6p22.1	TRIM31, TRIM10, PPP1R11, TRIM40, TRIM15, HLA-A29.1, TRIM26, HCG9, ZNRD1, RNF39	rs2844775-A	0.25	8E-7	(Temperament)	0.15	[NR] unit decrease	Affymetrix [677643]	N
597	chr6_cox_hap2	1693983	1693984	rs2188100	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p22.1	NR	rs2188100-A	0.16	5E-11		1.15	[1.1-1.2]	Affymetrix [9886854] (imputed)	N
597	chr6_cox_hap2	1693983	1693984	rs2188100	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p22.1	NR	rs2188100-A	0.16	5E-14			[NR]	Affymetrix [9886854] (imputed)	N
597	chr6_cox_hap2	1693983	1693984	rs2188100	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in never smokers	8,631 European ancestry cases, 120,544 European ancestry controls	NA	6p22.1	NR	rs2188100-A	0.16	2E-11		1.15	[1.11-1.2]	Affymetrix [9886854] (imputed)	N
597	chr6_cox_hap2	1694495	1694496	rs1345229	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	6p22.1	TRIM26	rs1345229-A	0.085649	1E-9		0.023856346	[0.016-0.032] unit increase	Affymetrix [93095623] (imputed)	N
597	chr6_cox_hap2	1698777	1698778	rs9380159	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p22.1	NR	rs9380159-?	NR	8E-13		0.1064	[0.077-0.136] unit decrease	Illumina [at least 560000] (imputed)	N
597	chr6_cox_hap2	1702128	1702129	rs2517602	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	TRIM26	rs2517602-T	NR	1E-9		6.068	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
597	chr6_cox_hap2	1703219	1703219	rs72031595	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	6p22.1		rs72031595-CT	0.551943	5E-9		0.014966801	[0.01-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
598	chr6_cox_hap2	1712534	1712535	rs5875247	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	6p22.1	HCG17	rs5875247-C	0.465286	6E-14		0.017951211	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
598	chr6_cox_hap2	1712967	1712968	rs3094137	29784950	Sawai H	2018-05-21	Sci Rep	Genome-wide association study identified new susceptible genetic variants in HLA class I region for hepatitis B virus-related hepatocellular carcinoma.	Hepatocellular carcinoma in hepatitis B infection	473 Japanese ancestry chronic hepatitis and hepatocellular carcinoma cases, 516 Japanese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma	153 Japanese ancestry chronic hepatitis and hepatocellular carcinoma cases, 614 Japanese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma, 94 Chinese ancestry chronic hepatitis and hepatocellular carcinoma cases, 187 Chinese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma, 185 Thai ancestry chronic hepatitis and hepatocellular carcinoma cases, 198 Thai ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma	6p22.1	HLA	rs3094137-?	NR	4E-7	(Japanese)	1.76	[1.41-2.19]	Affymetrix [447830]	N
598	chr6_cox_hap2	1714665	1714666	rs885916	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	HCG17	rs885916-T	NR	1E-11		6.793	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
598	chr6_cox_hap2	1720026	1720027	rs3129693	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p22.1	HCG17, TRIM26BP	rs3129693-T	NR	2E-9		0.0239683	[0.016-0.032] unit increase	Affymetrix [323123] (imputed)	N
598	chr6_cox_hap2	1727472	1727473	rs9391803	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	6p22.1	TRIM26	rs9391803-T	0.852467	2E-19		0.0266262	[0.021-0.032] unit decrease	Affymetrix [NR] (imputed)	N
598	chr6_cox_hap2	1729446	1729447	rs9261608	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6p22.1		rs9261608-T	0.858197	3E-8		0.0330532	[0.021-0.045] unit increase	NR [11722792] (imputed)	N
598	chr6_cox_hap2	1735520	1735521	rs2189373	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	HCG17	rs2189373-T	NR	8E-10		0.0232455	[0.016-0.031] unit decrease	Affymetrix [323858] (imputed)	N
598	chr6_cox_hap2	1735520	1735521	rs2189373	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	HCG17	rs2189373-T	NR	5E-9		5.835	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
598	chr6_cox_hap2	1735605	1735606	rs2187980	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	6p22.1		rs2187980-A	0.855994	2E-8		0.0328244	[0.021-0.044] unit increase	NR [11722792] (imputed)	N
598	chr6_cox_hap2	1737063	1737064	rs3094078	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	6p22.1	HCG17	rs3094078-?	NR	2E-15		0.0305	[0.024-0.037] unit decrease	Affymetrix [5701386] (imputed)	N
598	chr6_cox_hap2	1737063	1737064	rs3094078	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA	6p22.1	NR	rs3094078-?	NR	8E-6		0.0526	[0.029-0.076] unit increase	Illumina [at least 560000] (imputed)	N
598	chr6_cox_hap2	1739238	1739239	rs185780876	32185793	Yan J	2020-03-17	Clin Genet	A genome-wide association study identifies FSHR rs2300441 associated with follicle-stimulating hormone levels.	Luteinizing hormone levels in healthy women	720 Han Chinese ancestry individuals	NA	6p22.1	NR	rs185780876-?	NR	4E-7				Affymetrix [3101376] (imputed)	N
598	chr6_cox_hap2	1741401	1741402	rs2428507	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	HLA-L, HCG17	rs2428507-A	NR	4E-9		5.893	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
598	chr6_cox_hap2	1742017	1742018	rs2516703	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p22.1	HCG17	rs2516703-G	NR	1E-6		0.0184109	[0.011-0.026] unit decrease	Illumina [13520550] (imputed)	N
598	chr6_cox_hap2	1742017	1742018	rs2516703	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	6p22.1	HCG17	rs2516703-G	NR	1E-10		0.0283809	[0.02-0.037] unit decrease	Illumina [13520550] (imputed)	N
598	chr6_cox_hap2	1744537	1744538	rs2516697	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	HCG17, HLA-L	rs2516697-A	NR	1E-8		0.0194794	[0.013-0.026] unit decrease	Affymetrix [321016] (imputed)	N
598	chr6_cox_hap2	1753555	1753556	rs28894080	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p22.1	NR	rs28894080-?	NR	1E-8		0.1082	[0.071-0.145] unit increase	Illumina [at least 560000] (imputed)	N
598	chr6_cox_hap2	1759713	1759716	rs141219707	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	6p22.1	HCG17, HLA-L	rs141219707-G	0.064428	9E-12		0.0670612	[0.059-0.075] unit increase	Affymetrix [93095623] (imputed)	N
598	chr6_cox_hap2	1759714	1759716	rs368679067	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hashimoto thyroiditis	537 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	6p22.1		rs368679067-G	0.221880434	3E-13		0.64336747	[0.47-0.82] unit increase	Illumina [13428945] (imputed)	N
598	chr6_cox_hap2	1768958	1768959	rs1264622	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	HCG17, HLA-L, HCG18	rs1264622-T	NR	2E-12		0.0273215	[0.02-0.035] unit decrease	Affymetrix [323858] (imputed)	N
598	chr6_cox_hap2	1768958	1768959	rs1264622	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	HCG17, HLA-L, HCG18	rs1264622-T	NR	2E-11		0.0260716	[0.018-0.034] unit decrease	Affymetrix [127266] (imputed)	N
598	chr6_cox_hap2	1768958	1768959	rs1264622	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6p22.1	HCG18	rs1264622-T	0.200945	1E-26		0.045548007	[0.037-0.054] unit decrease	Affymetrix [93095623] (imputed)	N
598	chr6_cox_hap2	1768958	1768959	rs1264622	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p22.1	HLA-L, HCG17, HCG18	rs1264622-T	0.1901	2E-7		0.0455	[0.028-0.063] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
598	chr6_cox_hap2	1768958	1768959	rs1264622	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	6p22.1	HCG18	rs1264622-T	0.2019	4E-13		0.03202955	[0.023-0.041] unit decrease	Affymetrix [~ 2500000] (imputed)	N
598	chr6_cox_hap2	1785768	1785768	rs11380688	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p22.1	HCG17, HCG18	rs11380688-CT	0.2755	1E-9		0.0469	[0.032-0.062] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
598	chr6_cox_hap2	1788385	1788386	rs139419536	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	6p22.1	HCG18	rs139419536-G	0.5266	1E-22		0.0193	[0.015-0.023] unit decrease	Affymetrix [18391927] (imputed)	N
598	chr6_cox_hap2	1791076	1791077	rs1264587	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p22.1	HCG17, HCG18	rs1264587-G	NR	7E-10		0.0215064	[0.015-0.028] unit decrease	Affymetrix [319769] (imputed)	N
598	chr6_cox_hap2	1791076	1791077	rs1264587	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p22.1	HCG17, HCG18	rs1264587-G	NR	5E-9		0.0203583	[0.014-0.027] unit decrease	Affymetrix [319769] (imputed)	N
598	chr6_cox_hap2	1791076	1791077	rs1264587	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p22.1	HCG17, HCG18	rs1264587-G	NR	4E-8		0.0194219	[0.013-0.026] unit decrease	Affymetrix [321169] (imputed)	N
598	chr6_cox_hap2	1793089	1793090	rs6926097	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mumps	31,227 European ancestry cases, 54,153 European ancestry controls	NA	6p22.1	NR	rs6926097-?	NR	2E-13		0.5671	[0.41-0.72] unit decrease	Illumina [at least 560000] (imputed)	N
598	chr6_cox_hap2	1797123	1797124	rs9357097	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8 on CD39+ CD8+ T cell	2,915 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p22.1		rs9357097-T	0.47616	8E-12		0.1925	[0.14-0.25] unit increase	Illumina [17951463] (imputed)	N
598	chr6_cox_hap2	1797652	1797653	rs1264585	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p22.1	NR	rs1264585-A	0.233	1E-13	(conditional)	1.206	[1.16-1.25]	Illumina [11270530] (imputed)	N
598	chr6_cox_hap2	1800287	1800288	rs9261655	33563987	Tyrrell J	2021-02-09	Nat Commun	Genetic predictors of participation in optional components of UK Biobank.	Percentage of invited food questionnaires completed	300,639 European ancestry individuals	NA	6p22.1	NR	rs9261655-G	0.89	4E-9		0.86	[0.57-1.15] unit increase	Affymetrix [39302896] (imputed)	N
598	chr6_cox_hap2	1802666	1802667	rs1264584	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	334,944 European ancestry, NR ancestry individuals	NA	6p22.1		rs1264584-?	NR	5E-8				Affymetrix [NR] (imputed)	N
598	chr6_cox_hap2	1808076	1808077	rs1110464	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	6p22.1	TRIM39-RPP21	rs1110464-T	0.5706	3E-9		0.015407745	[0.01-0.021] unit decrease	Affymetrix [~ 11515000] (imputed)	N
598	chr6_cox_hap2	1811253	1811254	rs3094067	25827949	Kunz M	2015-05-04	Exp Dermatol	Genome-wide association study identifies new susceptibility loci for cutaneous lupus erythematosus.	Cutaneous lupus erythematosus	151 European ancestry cases, 1,288 European ancestry controls	219 European ancestry cases, 262 European ancestry controls	6p22.1	TRIM39, RPP21	rs3094067-G	0.096	2E-11		2.32	[1.68-3.20]	Affymetrix [906600]	N
598	chr6_cox_hap2	1814611	1814612	rs3778624	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	6p22.1	NR	rs3778624-?		7E-7	(MICA)			Illumina [NR]	N
598	chr6_cox_hap2	1817964	1817965	rs9261659	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p22.1	NR	rs9261659-G	0.12	1E-10	(IFNAR2_of_CD20p)			Illumina [5084123] (imputed)	N
598	chr6_cox_hap2	1817964	1817965	rs9261659	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p22.1	NR	rs9261659-?	NR	3E-13		0.1554	[0.11-0.2] unit decrease	Illumina [at least 560000] (imputed)	N
598	chr6_cox_hap2	1825038	1825039	rs45626136	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p22.1	RPP21	rs45626136-C	0.939	1E-6		0.111	[0.066-0.156] unit increase	Affymetrix, Illumina [7374092] (imputed)	N
598	chr6_cox_hap2	1825349	1825350	rs6986	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Anxiety	at least 23,606 European ancestry cases, at least 113,351 European ancestry controls	624,615 European ancestry cases, 1,310,854 European ancestry controls	6p22.1	TRIM39, RPP21	rs6986-G	0.2545	1E-12		0.018671134	[0.013-0.025] unit decrease	NR [9417325] (imputed)	N
598	chr6_cox_hap2	1825349	1825350	rs6986	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	6p22.1	RPP21	rs6986-C	0.223335	7E-10		6.16	z score increase	NR [10847151] (imputed)	N
598	chr6_cox_hap2	1825349	1825350	rs6986	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling guilty	373,380 European ancestry individuals	NA	6p22.1	TRIM39-RPP21	rs6986-C	0.223335	4E-13		7.25	z score increase	NR [10847151] (imputed)	N
598	chr6_cox_hap2	1825349	1825350	rs6986	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	6p22.1	GNL1, HLA-E, PRR3, RPP21, TRIM10, TRIM15, TRIM26, TRIM31, TRIM39, TRIM39-RPP21, TRIM40	rs6986-C	0.22334	8E-9		5.76	z score increase	Illumina [18485882] (imputed)	N
598	chr6_cox_hap2	1825349	1825350	rs6986	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	6p22.1	NR	rs6986-C	0.2277	5E-6	(Trans-16:1n-7, EA)	0.0079	[0.0046-0.0112] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
598	chr6_cox_hap2	1833066	1833067	rs3132649	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	6p22.1	TRIM39-RPP21, HLA-E	rs3132649-G	NR	4E-7		0.152484	[0.093-0.211] unit increase	Illumina [at least 950000] (imputed)	N
599	chr6_cox_hap2	1837540	1837541	rs3130379	31272903	Sunadome H	2019-07-01	Allergol Int	Correlation between eosinophil count, its genetic background and body mass index: The Nagahama Study.	Eosinophil counts	4,650 East Asian ancestry individuals	NA	6p22.1	NR	rs3130379-T	0.11	2E-7		0.1677	NR unit increase	Illumina [103680] (imputed)	N
599	chr6_cox_hap2	1837540	1837541	rs3130379	31272903	Sunadome H	2019-07-01	Allergol Int	Correlation between eosinophil count, its genetic background and body mass index: The Nagahama Study.	Eosinophil counts	4,206 East Asian ancestry individuals	NA	6p22.1	NR	rs3130379-T	0.11	4E-10		0.2134	NR unit increase	Illumina [103680] (imputed)	N
599	chr6_cox_hap2	1838537	1838537	rs202005918	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	95,717 East Asian ancestry individuals	NA	6p22.1		rs202005918-CA	0.233019	1E-8		0.0295853	[0.019-0.04] unit increase	Illumina [13471431] (imputed)	N
599	chr6_cox_hap2	1839960	1839961	rs3094622	29899525	Klimentidis YC	2018-06-13	Int J Obes (Lond)	Genome-wide association study of habitual physical activity in over 377,000 UK Biobank participants identifies multiple variants including CADM2 and APOE.	Moderate to vigorous physical activity levels	377,234 European ancestry individuals	NA	6p22.1	RPP21	rs3094622-A	0.86	1E-9		0.02	unit increase	Affymetrix [11800000] (imputed)	N
599	chr6_cox_hap2	1841211	1841212	rs116470386	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p22.1	NR	rs116470386-?	NR	5E-7		0.2768	[0.17-0.39] unit decrease	Illumina [at least 560000] (imputed)	N
599	chr6_cox_hap2	1845525	1845526	rs3094054	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p22.1	NR	rs3094054-T	0.1132	1E-7	(EA)	0.056	[0.035-0.077] unit decrease	Illumina [~ 11800000] (imputed)	N
599	chr6_cox_hap2	1847372	1847373	rs2057726	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	6p22.1		rs2057726-C	0.143	2E-91		0.31	[0.28-0.34] % increase	Affymetrix [NR] (imputed)	N
599	chr6_cox_hap2	1851965	1851965	rs139568388	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	UBQLN1P1	rs139568388-CT	NR	2E-8		0.0220953	[0.014-0.03] unit decrease	Affymetrix [323858] (imputed)	N
599	chr6_cox_hap2	1851965	1851965	rs139568388	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	UBQLN1P1	rs139568388-CT	NR	3E-8		0.0218212	[0.014-0.03] unit decrease	Affymetrix [127266] (imputed)	N
599	chr6_cox_hap2	1854773	1854774	rs3129817	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p22.1	UBQLN1P1	rs3129817-A	NR	1E-9		0.0241213	[0.016-0.032] unit decrease	Affymetrix [319769] (imputed)	N
599	chr6_cox_hap2	1854773	1854774	rs3129817	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p22.1	UBQLN1P1	rs3129817-A	NR	1E-8		0.0225242	[0.015-0.03] unit decrease	Affymetrix [319769] (imputed)	N
599	chr6_cox_hap2	1854773	1854774	rs3129817	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p22.1	UBQLN1P1	rs3129817-A	NR	5E-8		0.0218736	[0.014-0.03] unit decrease	Affymetrix [321169] (imputed)	N
599	chr6_cox_hap2	1854773	1854774	rs3129817	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Anxiety	at least 23,606 European ancestry cases, at least 113,351 European ancestry controls	624,615 European ancestry cases, 1,310,854 European ancestry controls	6p22.1	UBQLN1P1	rs3129817-G	0.1083	2E-48		0.052231386	[0.044-0.06] unit increase	NR [9417325] (imputed)	N
599	chr6_cox_hap2	1854773	1854774	rs3129817	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	UBQLN1P1	rs3129817-A	NR	1E-8		5.695	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
599	chr6_cox_hap2	1859350	1859351	rs970270	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Prostate cancer	10,792 European ancestry cases, 410,350 European ancestry controls	NA	6p22.1		rs970270-A	NR	3E-7		1.0985389	NR	Affymetrix [7846216] (imputed)	N
599	chr6_cox_hap2	1859764	1859765	rs3132625	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Peripheral artery disease	7,114 European ancestry cases, 475,964 European ancestry controls, 4,112 East Asian ancestry cases, 173,601 East Asian ancestry controls	NA	6p22.1		rs3132625-G	NR	2E-8		0.165	[0.11-0.22] unit increase	Affymetrix, Illumina [25844651] (imputed)	N
599	chr6_cox_hap2	1871708	1871709	rs2524204	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	6p22.1	intergenic	rs2524204-C	0.1322	6E-15		0.04113655	[0.031-0.051] unit decrease	Affymetrix [~ 2500000] (imputed)	N
599	chr6_cox_hap2	1871708	1871709	rs2524204	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	6p22.1	intergenic	rs2524204-C	0.1322	7E-14		0.03948169	[0.029-0.05] unit decrease	Affymetrix [~ 2500000] (imputed)	N
599	chr6_cox_hap2	1873370	1873371	rs9391683	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p22.1		rs9391683-G	0.689	2E-33				Affymetrix [10369434] (imputed)	N
599	chr6_cox_hap2	1873435	1873436	rs2516686	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	6p22.1	intergenic	rs2516686-G	0.1322	1E-13		0.03934043	[0.029-0.05] unit decrease	Affymetrix [~ 2500000] (imputed)	N
599	chr6_cox_hap2	1873435	1873436	rs2516686	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	6p22.1	intergenic	rs2516686-G	0.1322	6E-12		0.03638258	[0.026-0.047] unit decrease	Affymetrix [~ 2500000] (imputed)	N
599	chr6_cox_hap2	1873819	1873820	rs9391684	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p22.1		rs9391684-G	0.688	7E-19				Affymetrix [10369434] (imputed)	N
599	chr6_cox_hap2	1877459	1877460	rs3130116	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p22.1	NR	rs3130116-C	0.1391	6E-13		0.0124	[0.0091-0.0157] unit decrease	NR [7666894] (imputed)	N
599	chr6_cox_hap2	1879022	1879023	rs1264565	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	6p22.1		rs1264565-T	0.618	8E-15		0.01	[0.008-0.012] unit increase	NR [NR] (imputed)	N
599	chr6_cox_hap2	1885897	1885898	rs28780100	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p22.1	NR	rs28780100-?	NR	3E-9		0.1143	[0.077-0.152] unit increase	Illumina [at least 560000] (imputed)	N
599	chr6_cox_hap2	1887896	1887897	rs34874107	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	6p22.1		rs34874107-C	0.182865	4E-10		0.019685585	[0.014-0.026] unit increase	Affymetrix [93095623] (imputed)	N
599	chr6_cox_hap2	1892377	1892378	rs78860372	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lung cancer	4,444 East Asian ancestry cases, 174,282 East Asian ancestry controls	NA	6p22.1		rs78860372-T	0.236112602	5E-9		0.14972878	[0.099-0.2] unit increase	Illumina [13429980] (imputed)	N
599	chr6_cox_hap2	1894179	1894180	rs1264544	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	334,944 European ancestry, NR ancestry individuals	NA	6p22.1		rs1264544-?	NR	5E-8				Affymetrix [NR] (imputed)	N
599	chr6_cox_hap2	1894179	1894180	rs1264544	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	6p22.1		rs1264544-C	0.667	1E-12				Affymetrix [10369434] (imputed)	N
599	chr6_cox_hap2	1897758	1897759	rs3094717	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p22.1	NR	rs3094717-?	NR	6E-7		0.0733	[0.044-0.102] unit decrease	Illumina [at least 560000] (imputed)	N
599	chr6_cox_hap2	1899254	1899255	rs139215104	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mumps	31,227 European ancestry cases, 54,153 European ancestry controls	NA	6p22.1	NR	rs139215104-?	NR	6E-11		0.5908	[0.41-0.77] unit increase	Illumina [at least 560000] (imputed)	N
599	chr6_cox_hap2	1902193	1902194	rs9261899	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	6p22.1	NR	rs9261899-?	NR	9E-33		11.926	NR z score increase	Illumina [at least 830937] (imputed)	N
599	chr6_cox_hap2	1903604	1903605	rs76241157	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lung cancer	3,791 European ancestry cases, 489,012 European ancestry controls, 4,444 East Asian ancestry cases, 174,282 East Asian ancestry controls	NA	6p22.1		rs76241157-T	NR	1E-8		0.1454	[0.095-0.196] unit increase	Affymetrix, Illumina [25845450] (imputed)	N
599	chr6_cox_hap2	1903988	1903989	rs3130127	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	MICC	rs3130127-A	NR	8E-10		6.154	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
599	chr6_cox_hap2	1910399	1910400	rs114810763	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6p22.1		rs114810763-A	0.1549	2E-9		0.0121	[0.0082-0.016] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
599	chr6_cox_hap2	1910399	1910400	rs114810763	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6p22.1	Intergenic	rs114810763-A	0.1549	6E-12	(MTAG)	0.0129	[0.0092-0.0166] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
599	chr6_cox_hap2	1912772	1912773	rs149543464	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms (MTAG)	354,862 European ancestry individuals	NA	6p22.1	NR	rs149543464-G	0.8838	1E-10		0.0217	[0.015-0.028] unit increase	Illumina [NR] (imputed)	N
599	chr6_cox_hap2	1912772	1912773	rs149543464	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms	354,862 European ancestry individuals	NA	6p22.1	NR	rs149543464-G	0.8838	8E-9		0.0213	[0.014-0.029] unit increase	Illumina [NR] (imputed)	N
599	chr6_cox_hap2	1920819	1920820	rs1269556	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	6p22.1	NR	rs1269556-?	NR	2E-6		0.0083093	[0.0049-0.0117] unit decrease	Affymetrix [805426] (imputed)	N
599	chr6_cox_hap2	1921281	1921282	rs3132645	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p22.1	RNF39, TRIM31, FLOT1, PPP1R18, HLA-J, ZNRD1-AS1_3, ZNRD1, TRIM26, HCG17, TRIM26BP, HLA-L, TRIM39-RPP21, RPP21, HCG19P, ATAT1, NRM, IER3, HCG20, LINC00243, ZNRD1-AS1, HCG4P3, PPP1R11, TRIM31-AS1, TRIM40, TRIM10, TRIM15, PAIP1P1, XXbac-BPG283O16.9, HCG18, TRIM39, HLA-N, UBQLN1P1, MICC, SUCLA2P1, GNL1, ABCF1, PPP1R10, PTMAP1, MRPS18B, C6orf136, AL662800.2, DHX16, AL662797.1, XXbac-BPG252P9.9, TUBB, MDC1, Y_RNA, XXbac-BPG252P9.10, RN7SL353P	rs3132645-C	0.09428285	4E-22	(EA, MHC class I polypeptide-related sequence B)	0.7147	[0.57-0.86] unit decrease	Affymetrix [509946]	N
599	chr6_cox_hap2	1923937	1923938	rs1264516	33106546	Johnson TA	2020-10-26	J Hum Genet	Association of an IGHV3-66 gene variant with Kawasaki disease.	Kawasaki disease	1,276 East Asian ancestry cases, 5,086 East Asian ancestry controls	2,152 East Asian ancestry cases, 2,751 East Asian ancestry controls	6p22.1	LOC105375012	rs1264516-A	NR	4E-11		1.24	[1.16-1.32]	Affymetrix, Illumina [6265045] (imputed)	N
599	chr6_cox_hap2	1944305	1944306	rs3130141	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p22.1	RPP21, HLA-E	rs3130141-A	0.283	4E-23				Illumina [118177]	N
599	chr6_cox_hap2	1953268	1953269	rs2516667	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p22.1	NR	rs2516667-?	NR	5E-10		0.0889	[0.061-0.117] unit decrease	Illumina [at least 560000] (imputed)	N
599	chr6_cox_hap2	1953367	1953368	rs3132615	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p22.1	NR	rs3132615-T	0.1154	2E-6	(EA)	0.0507	[0.03-0.071] unit decrease	Illumina [~ 11800000] (imputed)	N
599	chr6_cox_hap2	1965027	1965028	rs9380180	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p22.1	RANP1	rs9380180-A	NR	6E-9		0.0171541	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
599	chr6_cox_hap2	1965027	1965028	rs9380180	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p22.1	RANP1	rs9380180-A	NR	1E-8		0.0168134	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
600	chr6_cox_hap2	1967357	1967358	rs12207974	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (age of onset)	37,846 British ancestry individuals	NA	6p22.1	NR	rs12207974-C	0.776	9E-11		1.066	[0.74-1.39] unit decrease	Affymetrix [10894596] (imputed)	N
600	chr6_cox_hap2	1967384	1967385	rs17875360	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	6p22.1	NR	rs17875360-?	NR	1E-6		0.0925	[0.055-0.13] unit increase	Illumina [at least 560000] (imputed)	N
600	chr6_cox_hap2	1967983	1967984	rs1264459	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	6p22.1	HLA-E	rs1264459-A	0.826302	3E-10		0.019164842	[0.013-0.025] unit increase	Affymetrix [93095623] (imputed)	N
600	chr6_cox_hap2	1970127	1970128	rs1264457	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	6p22.1	HLA-E	rs1264457-A	0.60324	8E-24		0.02398372	[0.019-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
600	chr6_cox_hap2	1970127	1970128	rs1264457	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p22.1	HLA-E	rs1264457-G		4E-11		0.015	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
600	chr6_cox_hap2	1980855	1980856	rs3131115	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder	29,475 European ancestry cases, 63,482 European ancestry controls	NA	6p21.33	NR	rs3131115-C	0.671942	1E-7		1.0845987	[1.05-1.12]	Affymetrix [7791636] (imputed)	N
600	chr6_cox_hap2	1980855	1980856	rs3131115	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	6p21.33	HLA-E, GNL1	rs3131115-T	NR	2E-6		0.0966506	[0.057-0.136] unit decrease	Illumina [at least 950000] (imputed)	N
600	chr6_cox_hap2	1983581	1983582	rs2429657	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.33		rs2429657-G	0.21809299999999998	2E-8		1.0286343	[1.02-1.04]	Affymetrix, Illumina [9851866] (imputed)	N
600	chr6_cox_hap2	1991972	1991973	rs140668832	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs140668832-?		2E-9		1.07	[1.05-1.09]	Illumina [7645193] (imputed)	N
600	chr6_cox_hap2	1991972	1991973	rs140668832	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs140668832-?		3E-10		1.92	[1.57-2.35]	Illumina [7645193] (imputed)	N
600	chr6_cox_hap2	1994531	1994532	rs28894081	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p21.33	NR	rs28894081-A	0.0655	1E-7		0.0126	[0.0079-0.0173] unit increase	NR [7666894] (imputed)	N
600	chr6_cox_hap2	1996087	1996088	rs10484552	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p21.33	NR	rs10484552-?	NR	8E-10		0.0986	[0.067-0.13] unit decrease	Illumina [at least 560000] (imputed)	N
600	chr6_cox_hap2	1999358	1999359	rs143654430	30111768	Yao C	2018-08-15	Nat Commun	Genome-wide mapping of plasma protein QTLs identifies putatively causal genes and pathways for cardiovascular disease.	Blood protein levels	6861 European ancestry individuals	4298 European ancestry individuals	6p21.33		rs143654430-T	0.981	7E-18	(C2)	0.639	unit increase	Affymetrix, Illumina [8509364] (imputed)	N
600	chr6_cox_hap2	2005087	2005088	rs139629463	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mumps	31,227 European ancestry cases, 54,153 European ancestry controls	NA	6p21.33	NR	rs139629463-?	NR	4E-6		0.3	[0.17-0.43] unit increase	Illumina [at least 560000] (imputed)	N
600	chr6_cox_hap2	2006518	2006519	rs149608588	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p21.33	NR	rs149608588-?	NR	1E-6		0.2523	[0.15-0.36] unit decrease	Illumina [at least 560000] (imputed)	N
600	chr6_cox_hap2	2007734	2007735	rs41265607	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.33		rs41265607-C	0.801	3E-28				Affymetrix [10369434] (imputed)	N
600	chr6_cox_hap2	2007734	2007735	rs41265607	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs41265607-C	0.801	4E-34				Affymetrix [10369434] (imputed)	N
600	chr6_cox_hap2	2007791	2007792	rs147537141	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	6p21.33		rs147537141-G	0.014219	2E-16		0.08431184	[0.064-0.104] unit increase	Affymetrix [93095623] (imputed)	N
600	chr6_cox_hap2	2021003	2021004	rs3130117	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p21.33	NR	rs3130117-?	NR	2E-7		0.0742	[0.046-0.102] unit increase	Illumina [at least 560000] (imputed)	N
600	chr6_cox_hap2	2023217	2023218	rs2524222	27479909	Hyde CL	2016-08-01	Nat Genet	Identification of 15 genetic loci associated with risk of major depression in individuals of European descent.	Major depressive disorder	84,847 European ancestry cases, 241,266 European ancestry controls	45,773 European ancestry cases, 106,354 European ancestry controls	6p21.33	GNL1	rs2524222-T	0.219809	1E-6		0.0335	[0.02-0.047] unit increase	Illumina [1220000] (imputed)	N
600	chr6_cox_hap2	2040702	2040703	rs3130040	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	6p21.33	PRR3	rs3130040-T	NR	2E-8		0.0366187	[0.024-0.049] unit increase	Illumina [13520550] (imputed)	N
600	chr6_cox_hap2	2049656	2049657	rs3132613	21900946	Nakabayashi K	2011-09-08	J Hum Genet	Identification of independent risk loci for Graves' disease within the MHC in the Japanese population.	Graves' disease	1,119 Japanese ancestry cases, 2,718 Japanese ancestry controls	432 Japanese ancestry cases, 1,157 Japanese ancestry controls	6p21.33	MHC	rs3132613-C	0.25	1E-13		1.43	[1.30-1.57]	Perlegen [268068]	N
600	chr6_cox_hap2	2051255	2051256	rs4148247	26379185	Garcia-Etxebarria K	2015-09-17	PLoS One	No Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity.	Mild influenza (H1N1) infection	107 European ancestry mild cases, 549 European ancestry population controls	NA	6p21.33	GCN20, ABCF1	rs4148247-?	0.0167	1E-8		5.963	[5.27-6.66]	Affymetrix [547296]	N
600	chr6_cox_hap2	2052002	2052003	rs2269710	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	IgM levels	14,442 Icelandic ancestry individuals	2,157 Swedish ancestry individuals	6p21.33	ABCF1	rs2269710-C	0.3579	3E-20		0.11	NR SD units increase	Illumina [21568490] (imputed)	N
600	chr6_cox_hap2	2056452	2056453	rs3132610	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p21.33	NR	rs3132610-G	0.1198	1E-6	(EA)	0.0499	[0.03-0.07] unit decrease	Illumina [~ 11800000] (imputed)	N
600	chr6_cox_hap2	2077905	2077906	rs9262120	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p21.33	ABCF1	rs9262120-A	NR	3E-8		5.562	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
600	chr6_cox_hap2	2078458	2078459	rs3095276	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	6p21.33	NR	rs3095276-?	NR	5E-6		0.0784	[0.045-0.112] unit increase	Illumina [at least 560000] (imputed)	N
600	chr6_cox_hap2	2083523	2083524	rs1264423	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.33		rs1264423-T	0.489	1E-18				Affymetrix [10369434] (imputed)	N
600	chr6_cox_hap2	2083523	2083524	rs1264423	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	6p21.33	PPP1R10	rs1264423-C	0.5121	6E-16		0.02836222	[0.021-0.035] unit decrease	Affymetrix [~ 2500000] (imputed)	N
600	chr6_cox_hap2	2085894	2085895	rs9262122	30169916	Sun Y	2018-08-31	J Eur Acad Dermatol Venereol	Investigation of the Predisposing Factor of Pemphigus and its clinical subtype through a Genome-wide association and next generation sequence analysis.	Pemphigus vulgaris	101 Chinese ancestry cases, 844 Chinese ancestry controls	at least 56 Chinese ancestry cases, up to 996 Chinese ancestry controls	6p21.33	NR	rs9262122-?	NR	5E-6	(adjusted for HLA-DRB1*14)	2.73		Illumina [5546030] (imputed)	N
600	chr6_cox_hap2	2088833	2088834	rs1264419	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	6p21.33	NR	rs1264419-C	0.5128	9E-10		1.037	[1.03-1.05]	Affymetrix, Illumina [NR] (imputed)	N
600	chr6_cox_hap2	2090387	2090388	rs2267637	33002439	Jin G	2020-10-01	Lancet Oncol	Genetic risk, incident gastric cancer, and healthy lifestyle: a meta-analysis of genome-wide association studies and prospective cohort study.	Gastric cancer	10,254 Han Chinese ancestry cases, 10,914 Han Chinese ancestry controls	NA	6p21.33	NR	rs2267637-T	0.31	3E-6		1.11	NR	Affymetrix, Illumina [6957974] (imputed)	N
600	chr6_cox_hap2	2096185	2096186	rs55777621	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6p21.33	NR	rs55777621-?	NR	4E-12				Affymetrix [~ 8270000] (imputed)	N
601	chr6_cox_hap2	2101438	2101439	rs111296996	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	6p21.33	MRPS18B	rs111296996-A	0.9872	5E-6		0.2039	[0.12-0.29] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
601	chr6_cox_hap2	2105580	2105581	rs148828689	32599975	Bae JS	2020-06-30	Cancer Res Treat	Genome-Wide Association Study for the Identification of Novel Genetic Variants Associated with the Risk of Neuroblastoma in Korean Children.	Neuroblastoma (pediatric)	296 Korean ancestry child cases, 1,000 Korean ancestry adult controls	NA	6p21.33	MRPS18B	rs148828689-?		4E-18		7.8	[4.7-12.9]	Illumina [NR] (imputed)	N
601	chr6_cox_hap2	2113283	2113284	rs12665339	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.33		rs12665339-A	0.85	3E-28				Affymetrix [10369434] (imputed)	N
601	chr6_cox_hap2	2113283	2113284	rs12665339	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	6p21.33	ATAT1	rs12665339-G	0.17	6E-9		1.06	[1.04-1.08]	Illumina [20370935] (imputed)	N
601	chr6_cox_hap2	2139288	2139289	rs1076829	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	DHX16	rs1076829-C	NR	4E-8		0.0176091	[0.011-0.024] unit decrease	Affymetrix [127266] (imputed)	N
601	chr6_cox_hap2	2140324	2140325	rs1076828	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	DHX16	rs1076828-A	NR	2E-8		0.0180204	[0.012-0.024] unit decrease	Affymetrix [323858] (imputed)	N
601	chr6_cox_hap2	2141029	2141030	rs74917683	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p21.33	NR	rs74917683-?	NR	2E-11		0.1491	[0.1-0.19] unit increase	Illumina [at least 560000] (imputed)	N
601	chr6_cox_hap2	2145664	2145665	rs55740398	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	6p21.33		rs55740398-A	0.0027098	6E-6		0.29793	[0.17-0.43] unit increase	Affymetrix [15580782] (imputed)	N
601	chr6_cox_hap2	2145947	2145948	rs3094097	31272903	Sunadome H	2019-07-01	Allergol Int	Correlation between eosinophil count, its genetic background and body mass index: The Nagahama Study.	Eosinophil counts	4,206 East Asian ancestry individuals	NA	6p21.33	NR	rs3094097-G	0.22	2E-9		0.1545	NR unit increase	Illumina [103680] (imputed)	N
601	chr6_cox_hap2	2162098	2162099	rs9262142	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p21.33	NR	rs9262142-A	0.1166	3E-6	(EA)	0.0489	[0.028-0.069] unit decrease	Illumina [~ 11800000] (imputed)	N
601	chr6_cox_hap2	2162390	2162391	rs2394392	31272903	Sunadome H	2019-07-01	Allergol Int	Correlation between eosinophil count, its genetic background and body mass index: The Nagahama Study.	Eosinophil counts	4,650 East Asian ancestry individuals	NA	6p21.33	NR	rs2394392-G	0.18	2E-8		0.1481	NR unit increase	Illumina [103680] (imputed)	N
601	chr6_cox_hap2	2164853	2164854	rs9262143	33909500	Moll M	2021-04-28	Am J Physiol Lung Cell Mol Physiol	A Systematic Analysis of Protein-altering Exonic Variants in Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease	up to 31,465 European ancestry cases, up to 203,688 European ancestry controls, up to 1,413 African ancestry cases, up to 6,080 African ancestry controls, up to 287 East Asian ancestry cases, up to 7,484 East Asian ancestry controls, up to 61 Hispanic cases, up to 613 Hispanic controls	NA	6p21.33	PPP1R18	rs9262143-T	0.14	1E-13		1.11	[1.08 -1.15]	Illumina [at least 109036]	N
601	chr6_cox_hap2	2164853	2164854	rs9262143	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p21.33	PPP1R18	rs9262143-T		3E-28		0.036	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
601	chr6_cox_hap2	2164854	2164855	rs138394556	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	6p21.33	NRM	rs138394556-A	0.1475	2E-8		0.018794373	[0.012-0.025] unit decrease	Affymetrix [11515109] (imputed)	N
601	chr6_cox_hap2	2168919	2168920	rs2269705	27151647	Chen G	2016-05-05	Addict Biol	An association study revealed substantial effects of dominance, epistasis and substance dependence co-morbidity on alcohol dependence symptom count.	Alcohol dependence symptom count	2,605 European ancestry individuals, 1,233 African American individuals	NA	6p21.33	NRM	rs2269705-?		3E-10	(additive)	0.266	[0.18-0.35] unit decrease	Illumina [974863]	N
601	chr6_cox_hap2	2169087	2169088	rs3094092	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	6p21.33	NRM	rs3094092-T	NR	2E-8		0.036598	[0.024-0.049] unit increase	Illumina [13520550] (imputed)	N
601	chr6_cox_hap2	2175136	2175137	rs137934746	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p21.33	NR	rs137934746-?	NR	1E-6		0.2471	[0.15-0.35] unit decrease	Illumina [at least 560000] (imputed)	N
601	chr6_cox_hap2	2176521	2176522	rs370462350	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	6p21.33	NRM	rs370462350-?	NR	2E-9		0.375	[0.25-0.5] unit decrease	Illumina [34656550] (imputed)	N
601	chr6_cox_hap2	2177595	2177596	rs149856401	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Stable angina pectoris	17,894 European ancestry cases, 325,132 European ancestry controls, 18,833 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	6p21.33		rs149856401-G	NR	1E-13		0.1724	[0.13-0.22] unit increase	Affymetrix, Illumina [20456336] (imputed)	N
601	chr6_cox_hap2	2178737	2178738	rs9468811	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs9468811-C	0.937946818961625	6E-7	(IGP19)	0.3471	[0.21-0.48] unit decrease	Illumina [~ 2500000] (imputed)	N
601	chr6_cox_hap2	2178737	2178738	rs9468811	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs9468811-C	0.937725588025022	3E-6	(IGP74)	0.3262	[0.19-0.46] unit decrease	Illumina [~ 2500000] (imputed)	N
601	chr6_cox_hap2	2178737	2178738	rs9468811	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs9468811-C	0.937641317877842	2E-6	(IGP75)	0.3304	[0.19-0.47] unit decrease	Illumina [~ 2500000] (imputed)	N
601	chr6_cox_hap2	2178737	2178738	rs9468811	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs9468811-C	0.937418950958538	3E-6	(IGP69)	0.3228	[0.19-0.46] unit decrease	Illumina [~ 2500000] (imputed)	N
601	chr6_cox_hap2	2178737	2178738	rs9468811	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs9468811-C	0.937308425901202	5E-7	(IGP76)	0.3469	[0.21-0.48] unit increase	Illumina [~ 2500000] (imputed)	N
601	chr6_cox_hap2	2181337	2181338	rs115448006	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.33	NR	rs115448006-T	0.01	5E-11		0.599756	[0.42-0.78] unit increase	Affymetrix [up to 8900000] (imputed)	N
601	chr6_cox_hap2	2191696	2191697	rs3094093	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs3094093-T	0.107712365538735	8E-6	(IGP65)	0.2214	[0.12-0.32] unit decrease	Illumina [~ 2500000] (imputed)	N
601	chr6_cox_hap2	2191696	2191697	rs3094093	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs3094093-T	0.107418420152946	8E-6	(IGP2)	0.2231	[0.13-0.32] unit increase	Illumina [~ 2500000] (imputed)	N
601	chr6_cox_hap2	2191696	2191697	rs3094093	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs3094093-T	0.107325880449438	3E-6	(IGP42)	0.2336	[0.14-0.33] unit increase	Illumina [~ 2500000] (imputed)	N
601	chr6_cox_hap2	2197488	2197489	rs4713354	31272903	Sunadome H	2019-07-01	Allergol Int	Correlation between eosinophil count, its genetic background and body mass index: The Nagahama Study.	Eosinophil counts	4,650 East Asian ancestry individuals	NA	6p21.33	MDC1	rs4713354-C	0.216	2E-8		0.14	NR unit increase	Illumina [103680] (imputed)	N
601	chr6_cox_hap2	2199539	2199540	rs117670375	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Gynecologic disease (multivariate analysis)	up to 7,975 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs117670375-?		1E-8	(uterine cervical cancer)			Illumina [7645193] (imputed)	N
601	chr6_cox_hap2	2199539	2199540	rs117670375	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Gynecologic disease	7,975 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs117670375-?		1E-7		1.16	[1.10-1.22]	Illumina [7645193] (imputed)	N
601	chr6_cox_hap2	2199539	2199540	rs117670375	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Gynecologic disease	7,315 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs117670375-?		2E-10				Illumina [7645193] (imputed)	N
601	chr6_cox_hap2	2199539	2199540	rs117670375	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs117670375-?		2E-9		1.07	[1.05-1.09]	Illumina [7645193] (imputed)	N
601	chr6_cox_hap2	2199539	2199540	rs117670375	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs117670375-?		3E-10		1.92	[1.57-2.35]	Illumina [7645193] (imputed)	N
601	chr6_cox_hap2	2200494	2200495	rs3132584	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	TUBB	rs3132584-T	NR	1E-8		0.021321	[0.014-0.029] unit decrease	Affymetrix [323858] (imputed)	N
601	chr6_cox_hap2	2200494	2200495	rs3132584	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	TUBB	rs3132584-T	NR	3E-8		0.0206734	[0.013-0.028] unit decrease	Affymetrix [127266] (imputed)	N
601	chr6_cox_hap2	2200494	2200495	rs3132584	32989287	Cuellar-Partida G	2020-09-28	Nat Hum Behav	Genome-wide association study identifies 48 common genetic variants associated with handedness.	Left-handedness	1,766,671 European ancestry individuals	NA	6p21.33	TUBB	rs3132584-T	0.2056	6E-25		0.95483845	[NR]	Illumina [12493444] (imputed)	N
601	chr6_cox_hap2	2205188	2205189	rs7781	33723403	Sha Z	2021-03-15	Nat Hum Behav	The genetic architecture of structural left-right asymmetry of the human brain.	Left-right brain asymmetry	32,256 European ancestry individuals	NA	6p21.33	TUBB	rs7781-G	0.24	2E-10				NR [9312144] (imputed)	N
601	chr6_cox_hap2	2206441	2206442	rs3094128	31504236	Wiberg A	2019-09-05	Brain	Handedness, language areas and neuropsychiatric diseases: insights from brain imaging and genetics.	Handedness (non-right-handed vs right-handed)	44,631 European ancestry non-right-handed individuals, 356,567 European ancestry right-handed individuals	NA	6p21.33	TUBB, MICB, FLOT1	rs3094128-?	0.789	3E-8		1.0526316	[1.03-1.06]	NR [~ 11000000] (imputed)	N
601	chr6_cox_hap2	2209513	2209514	rs3094127	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p21.33	FLOT1	rs3094127-A	NR	2E-8		5.644	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
601	chr6_cox_hap2	2210607	2210608	rs1064627	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	FLOT1	rs1064627-G	NR	2E-8		0.0196765	[0.013-0.027] unit increase	Affymetrix [321016] (imputed)	N
601	chr6_cox_hap2	2210607	2210608	rs1064627	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p21.33	NR	rs1064627-G	0.2	3E-13		1.15	[1.11-1.2]	Affymetrix [9886854] (imputed)	N
601	chr6_cox_hap2	2210607	2210608	rs1064627	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p21.33	NR	rs1064627-G	0.2	1E-18			[NR]	Affymetrix [9886854] (imputed)	N
601	chr6_cox_hap2	2210607	2210608	rs1064627	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p21.33	NR	rs1064627-G	0.2	2E-16		1.13	[1.1-1.16]	Affymetrix [9886854] (imputed)	N
601	chr6_cox_hap2	2210607	2210608	rs1064627	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p21.33	NR	rs1064627-G	0.2	2E-17			[NR]	Affymetrix [9886854] (imputed)	N
601	chr6_cox_hap2	2210607	2210608	rs1064627	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in non-current smokers	16,488 European ancestry cases, 169,688 European ancestry controls	NA	6p21.33	NR	rs1064627-G	0.2	2E-16		1.13	[1.1-1.16]	Affymetrix [9886854] (imputed)	N
601	chr6_cox_hap2	2210607	2210608	rs1064627	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in never smokers	8,631 European ancestry cases, 120,544 European ancestry controls	NA	6p21.33	NR	rs1064627-G	0.2	1E-13		1.16	[1.11-1.2]	Affymetrix [9886854] (imputed)	N
601	chr6_cox_hap2	2210607	2210608	rs1064627	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in ever smokers	12,446 European ancestry cases, 59,145 European ancestry controls	NA	6p21.33	NR	rs1064627-G	0.2	1E-7		1.1	[1.06-1.14]	Affymetrix [9886854] (imputed)	N
601	chr6_cox_hap2	2225648	2225649	rs2284174	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	6p21.33	IER3	rs2284174-C	0.22	2E-21		1.12	[1.10-1.15]	Affymetrix, Illumina [6224355] (imputed)	N
601	chr6_cox_hap2	2225648	2225649	rs2284174	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p21.33	NR	rs2284174-C	0.2189	1E-12		0.0102	[0.0075-0.0129] unit decrease	NR [7666894] (imputed)	N
601	chr6_cox_hap2	2225876	2225877	rs3130662	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p21.33	IER3, DDR1	rs3130662-A	0.334	1E-25				Illumina [118177]	N
602	chr6_cox_hap2	2229292	2229293	rs3129972	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of saturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	6p21.33		rs3129972-C	0.858209	1E-8		0.0336102	[0.022-0.045] unit decrease	NR [11722792] (imputed)	N
602	chr6_cox_hap2	2230069	2230070	rs2535324	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	RN7SL353P	rs2535324-C	NR	2E-9		0.0198337	[0.013-0.026] unit decrease	Affymetrix [127266] (imputed)	N
602	chr6_cox_hap2	2232345	2232346	rs28780111	30552173	Aterido A	2018-12-14	Ann Rheum Dis	Genetic variation at the glycosaminoglycan metabolism pathway contributes to the risk of psoriatic arthritis but not psoriasis.	Psoriatic arthritis	744 Spanish ancestry cases, 1,454 Spanish ancestry controls	1,430 cases, 1,417 controls	6p21.33	NR	rs28780111-?	NR	7E-11		6.51	[NR] z-score increase	Illumina [1387382] (imputed)	N
602	chr6_cox_hap2	2236076	2236077	rs12213680	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	6p21.33	RN7SL353P	rs12213680-A	0.171261	4E-17		0.0263628	[0.02-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
602	chr6_cox_hap2	2238973	2238974	rs3095340	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p21.33	HCG20	rs3095340-A	NR	4E-8		5.51	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
602	chr6_cox_hap2	2239820	2239821	rs3131035	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCG20	rs3131035-G	NR	4E-11		0.024688	[0.017-0.032] unit decrease	Affymetrix [323858] (imputed)	N
602	chr6_cox_hap2	2239820	2239821	rs3131035	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HCG20	rs3131035-G	NR	4E-10		0.0233656	[0.016-0.031] unit decrease	Affymetrix [127266] (imputed)	N
602	chr6_cox_hap2	2242375	2242376	rs9262172	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.33		rs9262172-T	0.742	1E-26				Affymetrix [10369434] (imputed)	N
602	chr6_cox_hap2	2242997	2242998	rs3094121	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCG20	rs3094121-T	NR	3E-8		0.0199067	[0.013-0.027] unit increase	Affymetrix [323123] (imputed)	N
602	chr6_cox_hap2	2248189	2248190	rs12526186	19721433	McClay JL	2009-09-01	Mol Psychiatry	Genome-wide pharmacogenomic analysis of response to treatment with antipsychotics.	Response to antipsychotic treatment	494 European ancestry cases, 244 African American and other ancestry cases	NA	6p21.33	intergenic	rs12526186-?	NR	3E-6	(risperidone)	9.0	[NR] % variance	Affymetrix, Perlegen [492900]	N
602	chr6_cox_hap2	2249524	2249525	rs3094117	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine without aura	7,107 European ancestry cases, 69,427 European ancestry controls	NA	6p21.33	intergenic	rs3094117-?	0.77	2E-6		1.12	[1.06-1.18]	Affymetrix, Illumina [~ 2300000] (imputed)	N
602	chr6_cox_hap2	2257842	2257843	rs3129977	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p21.33	HCG20	rs3129977-A	NR	8E-11		6.498	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
602	chr6_cox_hap2	2264969	2264970	rs147206302	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	6p21.33	HCG20	rs147206302-T	0.0032	7E-9		0.1843882	[0.12-0.25] unit decrease	Affymetrix [~ 2500000] (imputed)	N
602	chr6_cox_hap2	2270517	2270518	rs3131043	31089142	Law PJ	2019-05-14	Nat Commun	Association analyses identify 31 new risk loci for colorectal cancer susceptibility.	Colorectal cancer	31,197 European ancestry cases, 61,770 European ancestry controls	NA	6p21.33	NR	rs3131043-G	0.43	3E-8		1.07	[1.05-1.1]	Affymetrix, Illumina [> 10000000] (imputed)	N
602	chr6_cox_hap2	2270902	2270903	rs3129981	31358989	Gelernter J	2019-07-29	Nat Neurosci	Genome-wide association study of post-traumatic stress disorder reexperiencing symptoms in >165,000 US veterans.	Post-traumatic stress disorder (re-experiencing symptoms)	146,660 European ancestry individuals, 19,983 African American individuals	117,900 European ancestry individuals	6p21.33	NR	rs3129981-?	NR	2E-7	(AA)	0.347197	[NR] unit increase	Affymetrix [49134253] (imputed)	N
602	chr6_cox_hap2	2273619	2273620	rs3129984	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p21.33	NR	rs3129984-T	0.1179	8E-6	(EA)	0.0465	[0.026-0.067] unit decrease	Illumina [~ 11800000] (imputed)	N
602	chr6_cox_hap2	2274138	2274139	rs3131057	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	6p21.33	HCG20, LINC00243	rs3131057-C	0.6028	8E-17		0.03073045	[0.024-0.038] unit decrease	Affymetrix [~ 2500000] (imputed)	N
602	chr6_cox_hap2	2274179	2274180	rs11961980	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	6p21.33	HCG20, LINC00243	rs11961980-T	0.0038	2E-12		0.2133187	[0.15-0.27] unit decrease	Affymetrix [~ 2500000] (imputed)	N
602	chr6_cox_hap2	2274179	2274180	rs11961980	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	6p21.33	HCG20, LINC00243	rs11961980-T	0.0038	1E-11		0.206328	[0.15-0.27] unit decrease	Affymetrix [~ 2500000] (imputed)	N
602	chr6_cox_hap2	2275339	2275340	rs3131060	25827949	Kunz M	2015-05-04	Exp Dermatol	Genome-wide association study identifies new susceptibility loci for cutaneous lupus erythematosus.	Cutaneous lupus erythematosus	151 European ancestry cases, 1,288 European ancestry controls	219 European ancestry cases, 262 European ancestry controls	6p21.33	FLOT1	rs3131060-A	0.112	1E-13		2.3	[1.71-3.11]	Affymetrix [906600]	N
602	chr6_cox_hap2	2275941	2275942	rs3131064	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p21.33	LINC00243	rs3131064-T	NR	2E-9		5.983	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
602	chr6_cox_hap2	2276527	2276527	rs368739359	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	LINC00243	rs368739359-TAATG	NR	3E-8		0.0252092	[0.016-0.034] unit increase	Affymetrix [323123] (imputed)	N
602	chr6_cox_hap2	2277631	2277632	rs1264376	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	LINC00243	rs1264376-A	NR	2E-13		0.0302583	[0.022-0.038] unit decrease	Affymetrix [323858] (imputed)	N
602	chr6_cox_hap2	2277631	2277632	rs1264376	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	LINC00243	rs1264376-A	NR	3E-12		0.0288183	[0.021-0.037] unit decrease	Affymetrix [127266] (imputed)	N
602	chr6_cox_hap2	2277947	2277948	rs10947096	29534301	Nishida N	2018-03-13	Hepatology	Key HLA-DRB1-DQB1 haplotypes and role of the BTNL2 gene for response to a hepatitis B vaccine.	Response to hepatitis B vaccine	107 Japanese ancestry low responder individuals, 351 Japanese ancestry intermediate responder individuals, 735 Japanese ancestry high responder individuals	NA	6p21.33	DDR1	rs10947096-?		2E-6		0.197	unit increase	Affymetrix [427664]	N
602	chr6_cox_hap2	2278256	2278257	rs3129987	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Stable angina pectoris	18,833 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	6p21.33		rs3129987-C	0.884926231	3E-14		0.14236389	[0.11-0.18] unit decrease	Illumina [13427711] (imputed)	N
602	chr6_cox_hap2	2278263	2278264	rs1264375	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	LINC00243	rs1264375-C	NR	1E-9		0.0209768	[0.014-0.028] unit decrease	Affymetrix [323858] (imputed)	N
602	chr6_cox_hap2	2278997	2278998	rs4587207	25469926	Gottlieb DJ	2014-12-02	Mol Psychiatry	Novel loci associated with usual sleep duration: the CHARGE Consortium Genome-Wide Association Study.	Sleep duration	47,180 European ancestry individuals	4,771 African American individuals	6p21.33	FLOT1, LINC00243, IER3	rs4587207-G	0.20	2E-8	(EA)	3.14	[2.04-4.24] unit decrease	Affymetrix, Illumina [2033301]	N
602	chr6_cox_hap2	2282339	2282340	rs1264371	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p21.33	NR	rs1264371-T	0.352	2E-8	(IFNAR2_of_CD20p)			Illumina [5084123] (imputed)	N
602	chr6_cox_hap2	2282752	2282753	rs114376405	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p21.33	NR	rs114376405-?	NR	2E-6		0.2339	[0.14-0.33] unit increase	Illumina [at least 560000] (imputed)	N
602	chr6_cox_hap2	2285365	2285366	rs4713376	30958311	Tao F	2019-04-03	J Neuromuscul Dis	Modifier Gene Candidates in Charcot-Marie-Tooth Disease Type 1A: A Case-Only Genome-Wide Association Study.	Decreased fine motor function in Charcot-Marie-Tooth disease 1A (eating with utensils)	132 European ancestry severe cases, 288 European ancestry mild cases	NA	6p21.33	HCG20, LINC00243, TUBB, FLOT1, IER3	rs4713376-C	0.174	1E-6		3.288	[2.041-5.297]	Illumina [600000]	N
602	chr6_cox_hap2	2286408	2286409	rs3130783	23455636	Fritsche LG	2013-03-03	Nat Genet	Seven new loci associated with age-related macular degeneration.	Age-related macular degeneration	6,713 European ancestry cases, 48,402 European ancestry contols, 110 Southern Indian ancestry cases, 119 Southern Indian ancestry controls, 827 Japanese ancestry cases, 3,323 Japanese ancestry controls	9,070 European ancestry cases, 7,683 European ancestry contols, 461 East Asian ancestry cases, 547 East Asian ancestry controls	6p21.33	IER3, DDR1	rs3130783-A	0.79	2E-11		1.16	[1.11-1.20]	Affymetrix, Illumina [2442884] (imputed)	N
602	chr6_cox_hap2	2287182	2287183	rs151302046	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.33	NR	rs151302046-A	0.011	6E-12		0.591132	[0.42-0.76] unit increase	Affymetrix [up to 8900000] (imputed)	N
602	chr6_cox_hap2	2287652	2287653	rs1264363	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p21.33	NR	rs1264363-?	NR	8E-16		0.1077	[0.081-0.134] unit decrease	Illumina [at least 560000] (imputed)	N
602	chr6_cox_hap2	2290337	2290338	rs73437885	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	6p21.33	NR	rs73437885-?	NR	8E-6		0.0081424	[0.0046-0.0117] unit increase	Affymetrix [805426] (imputed)	N
602	chr6_cox_hap2	2292342	2292342	rs36091944	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	LINC00243	rs36091944-C	NR	3E-8		0.0230514	[0.015-0.031] unit decrease	Affymetrix [321016] (imputed)	N
602	chr6_cox_hap2	2294055	2294056	rs886424	25936594	Tomer Y	2015-04-27	J Autoimmun	Genome wide identification of new genes and pathways in patients with both autoimmune thyroiditis and type 1 diabetes.	Type 1 diabetes and autoimmune thyroid diseases	346 European ancestry cases, 727 European ancestry controls	185 European ancestry cases, 340 European ancestry controls	6p21.33	IER3, DDR1	rs886424-A	NR	3E-14		2.2107		Illumina [514008]	N
602	chr6_cox_hap2	2294055	2294056	rs886424	22688191	Bergen SE	2012-06-12	Mol Psychiatry	Genome-wide association study in a Swedish population yields support for greater CNV and MHC involvement in schizophrenia compared with bipolar disorder.	Bipolar disorder and schizophrenia	2,111 European ancestry schizophrenia cases, 836 European ancestry bipolar disorder cases, 2,535 European ancestry controls	NA	6p21.33	other genes, MHC	rs886424-?	NR	9E-7		1.37	[NR]	Affymetrix [745006]	N
602	chr6_cox_hap2	2295295	2295296	rs9501489	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	LINC00243	rs9501489-A	NR	2E-10		0.0672114	[0.047-0.088] unit decrease	Affymetrix [321016] (imputed)	N
602	chr6_cox_hap2	2295295	2295296	rs9501489	31235810	Fung K	2019-06-24	Sci Rep	Genome-wide association study identifies loci for arterial stiffness index in 127,121 UK Biobank participants.	Arterial stiffness index	127,121 European ancestry individuals	NA	6p21.33	DDR1	rs9501489-G	0.981	4E-6		0.067	[0.04-0.094] unit increase	Affymetrix [~ 10446505] (imputed)	N
602	chr6_cox_hap2	2295541	2295542	rs142090224	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Chickenpox	107,769 European ancestry cases, 15,982 European ancestry controls	NA	6p21.33	NR	rs142090224-?	NR	3E-6		0.1169	[0.068-0.166] unit decrease	Illumina [at least 560000] (imputed)	N
602	chr6_cox_hap2	2296247	2296248	rs1264355	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	6p21.33	NR	rs1264355-?	NR	2E-7		0.0847	[0.053-0.117] unit decrease	Illumina [at least 560000] (imputed)	N
602	chr6_cox_hap2	2296398	2296399	rs574050376	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	LINC00243	rs574050376-T	NR	5E-9		0.082304	[0.055-0.11] unit decrease	Affymetrix [321016] (imputed)	N
602	chr6_cox_hap2	2296398	2296399	rs574050376	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.33	NR	rs574050376-T	0.02613	2E-8	(AFMID)	0.0124	NR unit increase	Illumina [1671387] (imputed)	N
602	chr6_cox_hap2	2299820	2299821	rs1264353	27659466	van der Harst P	2016-09-27	J Am Coll Cardiol	52 Genetic Loci Influencing Myocardial Mass.	QRS complex (Cornell)	up to 58,172 European ancestry individuals, up to 690 Orcadian (founder/genetic isolate) individuals	13,263 European ancestry individuals, 3,603 African American individuals, 4,619 Indian ancestry individuals	6p21.33	NR	rs1264353-?	NR	7E-6	(EA)			Affymetrix, Illumina, Perlegen [2766983] (imputed)	N
602	chr6_cox_hap2	2303252	2303253	rs13208886	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p21.33	NR	rs13208886-?	NR	9E-12		0.1216	[0.087-0.156] unit decrease	Illumina [at least 560000] (imputed)	N
602	chr6_cox_hap2	2304176	2304177	rs1264351	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	6p21.33	AK098012	rs1264351-C	0.1265	2E-8	(EA)	0.0032	[0.002-0.0044] unit decrease	Affymetrix [NR] (imputed)	N
602	chr6_cox_hap2	2304176	2304177	rs1264351	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	6p21.33	AK098012	rs1264351-C	0.126	9E-10		0.0033	[0.0021-0.0045] unit decrease	Affymetrix [NR] (imputed)	N
602	chr6_cox_hap2	2306407	2306408	rs4248151	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.33		rs4248151-T	0.722	2E-11				Affymetrix [10369434] (imputed)	N
602	chr6_cox_hap2	2307232	2307233	rs7772131	22566498	Turner ST	2012-05-07	Hypertension	Genomic association analysis identifies multiple loci influencing antihypertensive response to an angiotensin II receptor blocker.	Response to angiotensin II receptor blocker therapy	198 European ancestry hypertensive individuals, 193 African American hypertensive individuals	NA	6p21.33	C6orf214	rs7772131-?	NR	3E-6	(AA)	6.73	[0.89-12.57] unit decrease	Affymetrix [~ 2300000] (imputed)	N
602	chr6_cox_hap2	2308606	2308607	rs1264350	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	6p21.33	IER3, DDR1	rs1264350-T	NR	1E-7		0.151743	[0.096-0.208] unit increase	Illumina [at least 950000] (imputed)	N
602	chr6_cox_hap2	2308720	2308721	rs1264349	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA	6p21.33	NR	rs1264349-?	NR	4E-6		0.0514	[0.03-0.073] unit decrease	Illumina [at least 560000] (imputed)	N
602	chr6_cox_hap2	2310052	2310053	rs7749924	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs7749924-C	0.851598582628062	8E-6	(IGP32)	0.2204	[0.12-0.32] unit increase	Illumina [~ 2500000] (imputed)	N
602	chr6_cox_hap2	2310336	2310337	rs78868683	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs78868683-?		3E-7		1.05	[1.03-1.08]	Illumina [7645193] (imputed)	N
602	chr6_cox_hap2	2310336	2310337	rs78868683	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs78868683-?		1E-7		1.68	[1.39-2.04]	Illumina [7645193] (imputed)	N
602	chr6_cox_hap2	2310383	2310384	rs3130646	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.33	Intergenic	rs3130646-G	NR	3E-6		0.0231949	[0.013-0.033] unit decrease	Illumina [13520550] (imputed)	N
602	chr6_cox_hap2	2310756	2310757	rs1264347	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in diabetes	70,762 European ancestry individuals, 20,967 African American individuals	NA	6p21.33	AK098012	rs1264347-T	0.109	1E-12		1.01	[0.73-1.29] unit decrease	Affymetrix [NR] (imputed)	N
602	chr6_cox_hap2	2310756	2310757	rs1264347	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.33	LINC00243	rs1264347-T	0.1326	5E-7		0.0552	[0.034-0.077] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
602	chr6_cox_hap2	2311456	2311457	rs9501030	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	6p21.33	IER3, DDR1	rs9501030-A	0.16	4E-10		6.27	z-score increase	Affymetrix [4311822] (imputed)	N
602	chr6_cox_hap2	2311456	2311457	rs9501030	20848476	Haritunians T	2010-11-01	Inflamm Bowel Dis	Genetic predictors of medically refractory ulcerative colitis.	Ulcerative colitis	324 European ancestry medically refractory ulcerative colitis cases, 537 European ancestry non-medically refractory ulcerative colitis cases, 2,601 European ancestry controls	NA	6p21.33	IER3, GTF2H4, FLOT1, VARS2, MIR588, DDR1	rs9501030-A	NR	4E-6	(Analysis II)			Illumina [313720]	N
602	chr6_cox_hap2	2320829	2320830	rs2517582	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG27H4.8	rs2517582-T	NR	3E-11		0.019246	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
602	chr6_cox_hap2	2320829	2320830	rs2517582	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG27H4.8	rs2517582-T	NR	8E-11		0.0187782	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
602	chr6_cox_hap2	2320829	2320830	rs2517582	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG27H4.8	rs2517582-T	NR	4E-9		0.0185153	[0.012-0.025] unit decrease	Affymetrix [323123] (imputed)	N
602	chr6_cox_hap2	2320829	2320830	rs2517582	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG27H4.8	rs2517582-T	NR	3E-9		0.0173144	[0.012-0.023] unit increase	Affymetrix [321169] (imputed)	N
602	chr6_cox_hap2	2320829	2320830	rs2517582	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	6p21.33	NR	rs2517582-T	0.383721	5E-18		0.0135974	[0.011-0.016] unit increase	Affymetrix [16578495] (imputed)	N
602	chr6_cox_hap2	2320829	2320830	rs2517582	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	6p21.33	NR	rs2517582-T	0.38430299999999995	2E-18		0.0277124	[0.022-0.033] unit increase	Affymetrix [16580851] (imputed)	N
602	chr6_cox_hap2	2320829	2320830	rs2517582	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.33	XXbac-BPG27H4.8	rs2517582-T	0.4084	4E-6		0.0319	[0.018-0.045] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
602	chr6_cox_hap2	2320829	2320830	rs2517582	28468790	Agopian AJ	2017-06-01	Circ Cardiovasc Genet	Genome-Wide Association Studies and Meta-Analyses for Congenital Heart Defects.	Conotruncal heart defects (maternal effects)	up to 838 European ancestry trios	NA	6p21.33	GTF2H4, VARS2	rs2517582-?	NR	3E-7		1.174787	[1.104793-1.249214]	Illumina [at least 4756722] (imputed)	N
602	chr6_cox_hap2	2322123	2322124	rs2517580	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG27H4.8	rs2517580-A	NR	4E-8		0.0175646	[0.011-0.024] unit increase	Affymetrix [319769] (imputed)	N
602	chr6_cox_hap2	2329950	2329951	rs2844662	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.33		rs2844662-C	0.624	2E-43				Affymetrix [10369434] (imputed)	N
602	chr6_cox_hap2	2330419	2330420	rs139507938	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1a levels	3,522 Finnish ancestry individuals	NA	6p21.33	NR	rs139507938-G	NR	7E-6		0.907	[0.51-1.3] SD units increase	NR [10700000] (imputed)	N
602	chr6_cox_hap2	2332444	2332445	rs2263298	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p21.33	NR	rs2263298-?	NR	3E-9		0.0842	[0.056-0.112] unit decrease	Illumina [at least 560000] (imputed)	N
602	chr6_cox_hap2	2335837	2335838	rs2844660	28468790	Agopian AJ	2017-06-01	Circ Cardiovasc Genet	Genome-Wide Association Studies and Meta-Analyses for Congenital Heart Defects.	Congenital heart disease (maternal effect)	1,119 European ancestry trios	NA	6p21.33	intergenic	rs2844660-?	NR	1E-6		1.365322	[1.204119-1.548106]	Illumina [at least 4756722] (imputed)	N
602	chr6_cox_hap2	2336208	2336209	rs11759095	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	6p21.33	NR	rs11759095-?	NR	1E-14		7.7	NR z score decrease	Illumina [at least 830937] (imputed)	N
602	chr6_cox_hap2	2336528	2336529	rs758778	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.33		rs758778-T	0.759	4E-32				Affymetrix [10369434] (imputed)	N
602	chr6_cox_hap2	2336528	2336529	rs758778	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p21.33		rs758778-T	0.759	3E-25				Affymetrix [10369434] (imputed)	N
602	chr6_cox_hap2	2344139	2344140	rs2535326	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	RN7SKP186	rs2535326-T	NR	1E-10		0.0207397	[0.014-0.027] unit increase	Affymetrix [323858] (imputed)	N
602	chr6_cox_hap2	2344139	2344140	rs2535326	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	RN7SKP186	rs2535326-T	NR	3E-9		0.019109	[0.013-0.025] unit increase	Affymetrix [127266] (imputed)	N
602	chr6_cox_hap2	2344195	2344196	rs3130792	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DDR1	5,364 Icelandic ancestry individuals	NA	6p21.33		rs3130792-T	0.4372	7E-54		0.279081	[0.24-0.31] unit increase	Illumina [7506463] (imputed)	N
602	chr6_cox_hap2	2350116	2350117	rs2535341	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p21.33	DDR1-AS1	rs2535341-C	NR	2E-8		0.0208511	[0.014-0.028] unit decrease	Affymetrix [323858] (imputed)	N
602	chr6_cox_hap2	2357664	2357665	rs1264332	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	6p21.33	NR	rs1264332-C	0.35264300000000004	2E-22		0.0233666	[0.019-0.027] unit increase	Affymetrix [16583148] (imputed)	N
603	chr6_cox_hap2	2360350	2360351	rs7756521	20041166	Fellay J	2009-12-24	PLoS Genet	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA		VARS2, DDR1, DPCR1	rs7756521-?	NR	1E-6	(progression)			Illumina [NR]	N
603	chr6_cox_hap2	2361221	2361222	rs885910	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	DDR1	rs885910-T	NR	9E-9		0.0184374	[0.012-0.025] unit decrease	Affymetrix [323858] (imputed)	N
603	chr6_cox_hap2	2361221	2361222	rs885910	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	DDR1	rs885910-T	NR	4E-8		0.0176635	[0.011-0.024] unit decrease	Affymetrix [127266] (imputed)	N
603	chr6_cox_hap2	2369991	2369992	rs1264322	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking initiation (ever regular vs never regular)	up to 433,216 European ancestry individuals	NA	6p21.33	DDR1	rs1264322-A	0.146	2E-8		0.0171	[0.011-0.023] unit decrease	Illumina [~ 250000] (imputed)	N
603	chr6_cox_hap2	2370351	2370352	rs7743661	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p21.33	DDR1	rs7743661-C	0.25	1E-6	(Turkish)	1.62	[1.33-1.97]	Illumina [up to 547389]	N
603	chr6_cox_hap2	2378441	2378442	rs2524236	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	QRS duration	3,274 African American individuals, 13,420 Hispanic/Latino individuals, 126 Asian ancestry individuals, 226 Native American ancestry individuals	NA	6p21.33	HCG22	rs2524236-?	NR	1E-10		0.6324871	[0.44-0.83] unit decrease	Illumina [26566045] (imputed)	N
603	chr6_cox_hap2	2385578	2385579	rs111782145	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	6p21.33	CDSN, DPCR1, GTF2H4	rs111782145-C	NR	2E-8	(Chinese)	1.2300123	[1.16-1.3]	Affymetrix, Illumina [up to 5107227] (imputed)	N
603	chr6_cox_hap2	2388226	2388227	rs1052693	23028341	Yang X	2012-09-13	PLoS Genet	Genome-wide association study for serum complement C3 and C4 levels in healthy Chinese subjects.	Complement C3 and C4 levels	1,999 Han Chinese ancestry male individuals	1,496 Han Chinese ancestry male individuals	6p21.33	HLA-A	rs1052693-G	0.36	3E-48	(Serum level of C4)	0.1	[0.080-0.120] g/L increase	Illumina [1940245] (imputed)	N
603	chr6_cox_hap2	2391710	2391711	rs886420	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p21.33	GTF2H4	rs886420-A	0.311	2E-24				Illumina [118177]	N
603	chr6_cox_hap2	2392061	2392062	rs1264308	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Squamous cell lung carcinoma	8,350 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	6p21.33	NR	rs1264308-T	NR	6E-10		1.29	[1.19-1.40]	NR [NR] (imputed)	N
603	chr6_cox_hap2	2392061	2392062	rs1264308	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Non-small cell lung cancer	27,120 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	6p21.33	NR	rs1264308-T	NR	2E-7		1.16	[1.1-1.23]	NR [NR] (imputed)	N
603	chr6_cox_hap2	2396266	2396267	rs146114215	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.33		rs146114215-G	0.995	1E-22				Affymetrix [10369434] (imputed)	N
603	chr6_cox_hap2	2396266	2396267	rs146114215	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	6p21.33		rs146114215-G	0.995	9E-15				Affymetrix [10369434] (imputed)	N
603	chr6_cox_hap2	2396266	2396267	rs146114215	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	6p21.33		rs146114215-G	0.995	1E-16				Affymetrix [10369434] (imputed)	N
603	chr6_cox_hap2	2396266	2396267	rs146114215	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs146114215-G	0.995	5E-26				Affymetrix [10369434] (imputed)	N
603	chr6_cox_hap2	2399391	2399392	rs118124843	31537649	Salem RM	2019-09-19	J Am Soc Nephrol	Genome-Wide Association Study of Diabetic Kidney Disease Highlights Biology Involved in Glomerular Basement Membrane Collagen.	Microalbuminuria in type 1 diabetes	2,447 European ancestry cases, 12,113 European ancestry controls	NA	6p21.33	DDR1, VARS2	rs118124843-T	0.011	4E-8		3.79	[NR]	Illumina [up to 49000000] (imputed)	N
603	chr6_cox_hap2	2402409	2402410	rs2074506	33909500	Moll M	2021-04-28	Am J Physiol Lung Cell Mol Physiol	A Systematic Analysis of Protein-altering Exonic Variants in Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease	up to 31,465 European ancestry cases, up to 203,688 European ancestry controls, up to 1,413 African ancestry cases, up to 6,080 African ancestry controls, up to 287 East Asian ancestry cases, up to 7,484 East Asian ancestry controls, up to 61 Hispanic cases, up to 613 Hispanic controls	NA	6p21.33	VARS2	rs2074506-G	0.65	3E-7		1.06	[1.03 -1.08]	Illumina [at least 109036]	N
603	chr6_cox_hap2	2402797	2402798	rs753725	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	6p21.33	VARS2	rs753725-T	0.4062	1E-9		0.0205	[0.014-0.027] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
603	chr6_cox_hap2	2402797	2402798	rs753725	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	6p21.33	VARS2	rs753725-T	0.4562	3E-7		0.020761	[0.013-0.029] mg/dL increase	Affymetrix, Illumina [8217339] (imputed)	N
603	chr6_cox_hap2	2409696	2409697	rs2532929	28877031	Zhang G	2017-09-07	N Engl J Med	Genetic Associations with Gestational Duration and Spontaneous Preterm Birth.	Gestational age at birth (maternal effect)	43,568 European ancestry mothers	8,643 European ancestry mothers	6p21.33	SFTA2, VARS2, DPCR1	rs2532929-G	0.397	2E-6		0.622	[NR] unit decrease	Illumina [15635593] (imputed)	N
603	chr6_cox_hap2	2411572	2411573	rs3095152	32771030	Tangtanatakul P	2020-08-08	Arthritis Res Ther	Meta-analysis of genome-wide association study identifies FBN2 as a novel locus associated with systemic lupus erythematosus in Thai population.	Systemic lupus erythematosus	487 Thai cases, 1,606 Thai controls	405 Thai cases, 1,590 Thai controls	6p21.33	SFTA2	rs3095152-A	0.03	6E-7		2.4584	[NR]	Illumina [421909] (imputed)	N
603	chr6_cox_hap2	2412016	2412017	rs2253705	35215271	Almandil NB	2022-01-27	Pharmaceuticals (Basel)	Integration of Transcriptome and Exome Genotyping Identifies Significant Variants with Autism Spectrum Disorder.	Autism spectrum disorder	70 Arab ancestry cases, 132 Arab ancestry controls	NA	6p21.33	NA	rs2253705-A	0.125	4E-6		3.706	[2.086-6.583]	Illumina [243345]	N
603	chr6_cox_hap2	2412350	2412351	rs2253718	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	Y_RNA	rs2253718-T	NR	3E-11		0.019062	[0.013-0.025] unit decrease	Affymetrix [319769] (imputed)	N
603	chr6_cox_hap2	2412350	2412351	rs2253718	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	Y_RNA	rs2253718-T	NR	8E-10		0.0195334	[0.013-0.026] unit decrease	Affymetrix [323858] (imputed)	N
603	chr6_cox_hap2	2412350	2412351	rs2253718	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	Y_RNA	rs2253718-T	NR	3E-10		0.0180687	[0.012-0.024] unit decrease	Affymetrix [319769] (imputed)	N
603	chr6_cox_hap2	2412350	2412351	rs2253718	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	Y_RNA	rs2253718-T	NR	3E-8		0.0176831	[0.011-0.024] unit decrease	Affymetrix [127266] (imputed)	N
603	chr6_cox_hap2	2412350	2412351	rs2253718	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	Y_RNA	rs2253718-T	NR	5E-11		0.0204362	[0.014-0.027] unit increase	Affymetrix [323123] (imputed)	N
603	chr6_cox_hap2	2412350	2412351	rs2253718	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	Y_RNA	rs2253718-T	NR	3E-11		0.0191888	[0.014-0.025] unit decrease	Affymetrix [321169] (imputed)	N
603	chr6_cox_hap2	2415356	2415356	rs539017487	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	6p21.33	NR	rs539017487-GT	0.365568	4E-26		0.0391332	[0.033-0.045] unit increase	Affymetrix [16577424] (imputed)	N
603	chr6_cox_hap2	2416182	2416183	rs2844649	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	Y_RNA	rs2844649-A	NR	1E-10		0.0311282	[0.022-0.041] unit increase	Affymetrix [323123] (imputed)	N
603	chr6_cox_hap2	2416182	2416183	rs2844649	32589924	Bi W	2020-06-23	Am J Hum Genet	A Fast and Accurate Method for Genome-Wide Time-to-Event Data Analysis and Its Application to UK Biobank.	Asthma (time to event)	25,240 British ancestry cases, 257,631 British ancestry controls	NA	6p21.33	SFTA2, DPCR149	rs2844649-?	NR	4E-8				NR [~ 24000000] (imputed)	N
603	chr6_cox_hap2	2417223	2417224	rs3132571	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs3132571-A	0.623	3E-58				Affymetrix [10369434] (imputed)	N
603	chr6_cox_hap2	2421311	2421312	rs2243739	33602968	Skuladottir AT	2021-02-18	Sci Rep	A meta-analysis uncovers the first sequence variant conferring risk of Bell's palsy.	Bell's palsy	4,714 European ancestry cases, 1,011,520 European ancestry controls	NA	6p21.33	DPCR1	rs2243739-C	0.3504	5E-6		0.90366	NR	Affymetrix, Illumina [30341632] (imputed)	N
603	chr6_cox_hap2	2425361	2425362	rs3132581	23453885	Smoller JW	2013-02-27	Lancet	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NA	6p21.33	NR	rs3132581-G		2E-7	(Modelling analysis)			NR [1252901] (imputed)	N
603	chr6_cox_hap2	2426455	2426456	rs3130781	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	DPCR1, HCG21	rs3130781-C	NR	3E-10		0.0233694	[0.016-0.031] unit increase	Affymetrix [323123] (imputed)	N
603	chr6_cox_hap2	2426654	2426655	rs2517451	33649182	Penova M	2021-03-01	Proc Natl Acad Sci U S A	Genome wide association study of HTLV-1-associated myelopathy/tropical spastic paraparesis in the Japanese population.	HTLV-1 associated myelopathy	731 Japanese ancestry cases, 846 Japanese ancestry controls	NA	6p21.33		rs2517451-C	0.04	2E-9		2.69	[1.95-3.71]	Illumina [126394]	N
603	chr6_cox_hap2	2431044	2431045	rs11969476	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	6p21.33	NR	rs11969476-?	NR	1E-10	(MIC-A)	1.10404	[0.77-1.44] unit increase	Illumina [11901634] (imputed)	N
603	chr6_cox_hap2	2432027	2432028	rs3132580	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p21.33	DPCR1	rs3132580-A		3E-34		0.037	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
603	chr6_cox_hap2	2432027	2432028	rs3132580	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	6p21.33	DPCR1	rs3132580-G	NR	2E-7		0.149993	[0.094-0.206] unit increase	Illumina [at least 950000] (imputed)	N
603	chr6_cox_hap2	2432027	2432028	rs3132580	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.33	DPCR1	rs3132580-T	0.1379	3E-40		2.74	[NR]	Illumina [242824]	N
603	chr6_cox_hap2	2434434	2434435	rs116020851	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p21.33	HCG21	rs116020851-C	0.971	3E-7		0.182	[0.11-0.25] unit increase	Affymetrix, Illumina [7374092] (imputed)	N
603	chr6_cox_hap2	2435428	2435429	rs17189763	28468790	Agopian AJ	2017-06-01	Circ Cardiovasc Genet	Genome-Wide Association Studies and Meta-Analyses for Congenital Heart Defects.	Conotruncal heart defects (maternal effects)	up to 838 European ancestry trios	NA	6p21.33	GTF2H4, VARS2	rs17189763-?	NR	8E-7		1.041635	[1.024871-1.058673]	Illumina [at least 4756722] (imputed)	N
603	chr6_cox_hap2	2435830	2435831	rs9368648	33766035	Wakim V	2021-03-25	BMC Med Genomics	New susceptibility alleles associated with severe coronary artery stenosis in the Lebanese population.	Severe coronary stenosis (family history of CAD interaction)	1,734 Middle Eastern ancestry cases, 757 Middle Eastern ancestry controls	NA	6p21.33	intergenic	rs9368648-T	NR	1E-9				Illumina [NR]	N
603	chr6_cox_hap2	2435830	2435831	rs9368648	33766035	Wakim V	2021-03-25	BMC Med Genomics	New susceptibility alleles associated with severe coronary artery stenosis in the Lebanese population.	Severe coronary stenosis	1,734 Middle Eastern ancestry cases, 757 Middle Eastern ancestry controls	NA	6p21.33	intergenic	rs9368648-T	NR	3E-9				Illumina [NR]	N
603	chr6_cox_hap2	2438420	2438421	rs3095156	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA	6p21.33	NR	rs3095156-?	NR	7E-6		0.0497	[0.028-0.071] unit decrease	Illumina [at least 560000] (imputed)	N
603	chr6_cox_hap2	2443742	2443743	rs3131934	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p21.33	NR	rs3131934-?	NR	6E-8		5.421	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
603	chr6_cox_hap2	2444121	2444122	rs138678612	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	6p21.33	NR	rs138678612-G	0.0217	1E-8		1.1235955	[1.08-1.16]	Affymetrix, Illumina [NR] (imputed)	N
603	chr6_cox_hap2	2445692	2445693	rs3095089	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCG21	rs3095089-T	NR	3E-13		0.0287765	[0.021-0.036] unit decrease	Affymetrix [323858] (imputed)	N
603	chr6_cox_hap2	2445692	2445693	rs3095089	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HCG21	rs3095089-T	NR	4E-12		0.0272715	[0.02-0.035] unit decrease	Affymetrix [127266] (imputed)	N
603	chr6_cox_hap2	2445692	2445693	rs3095089	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p21.33	NR	rs3095089-?	NR	8E-13		0.0835	[0.061-0.106] unit decrease	Illumina [at least 560000] (imputed)	N
603	chr6_cox_hap2	2445762	2445763	rs3131933	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.33		rs3131933-T	0.474	5E-17				Affymetrix [10369434] (imputed)	N
603	chr6_cox_hap2	2445762	2445763	rs3131933	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.33	NR	rs3131933-T	0.808	7E-9	(conditional)	0.891	[0.85-0.93]	Illumina [11270530] (imputed)	N
603	chr6_cox_hap2	2448561	2448562	rs3095086	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCG21	rs3095086-A	NR	1E-10		0.0225432	[0.016-0.029] unit decrease	Affymetrix [323858] (imputed)	N
603	chr6_cox_hap2	2448561	2448562	rs3095086	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HCG21	rs3095086-A	NR	6E-10		0.0216316	[0.015-0.028] unit decrease	Affymetrix [127266] (imputed)	N
603	chr6_cox_hap2	2449630	2449631	rs3131781	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p21.33	NR	rs3131781-G	0.1445	9E-9		0.0097	[0.0064-0.013] unit decrease	NR [7666894] (imputed)	N
603	chr6_cox_hap2	2450781	2450782	rs9368649	30626913	Amare AT	2019-01-09	Mol Psychiatry	Bivariate genome-wide association analyses of the broad depression phenotype combined with major depressive disorder, bipolar disorder or schizophrenia reveal eight novel genetic loci for depression.	Broad depression or major depressive disorder (self-reported)	9,240 European ancestry broad depression cases, 9,519 European ancestry broad depression controls, 51,258 European ancestry individuals, 75,607 European ancestry self-reported major depressive disorder cases, 231,747 European ancestry self-reported major depressive disorder controls	322,580 individuals	6p21.33	MUC21	rs9368649-A	0.14	1E-8				Affymetrix, Illumina [at least 918921] (imputed)	N
603	chr6_cox_hap2	2450781	2450782	rs9368649	23284291	Hancock DB	2012-12-20	PLoS Genet	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (smoking interaction)	50,047 European ancestry individuals	NA	6p21.33	MUC21, DPCR1	rs9368649-A	NR	1E-7	(FEV1/FVC, Pack-years)			NR [~ 2500000] (imputed)	N
603	chr6_cox_hap2	2450781	2450782	rs9368649	23284291	Hancock DB	2012-12-20	PLoS Genet	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (smoking interaction)	50,047 European ancestry individuals	NA	6p21.33	MUC21, DPCR1	rs9368649-A	NR	1E-7	(FEV1/FVC, Ever-smoking)			NR [~ 2500000] (imputed)	N
603	chr6_cox_hap2	2452285	2452286	rs2530710	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs2530710-?		4E-7		1.0416667	[1.03-1.06]	Illumina [7645193] (imputed)	N
603	chr6_cox_hap2	2452285	2452286	rs2530710	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs2530710-?		1E-7		1.5151515	[1.3-1.75]	Illumina [7645193] (imputed)	N
603	chr6_cox_hap2	2457525	2457526	rs34853064	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.33	NR	rs34853064-?	NR	6E-9				Affymetrix [~ 8270000] (imputed)	N
603	chr6_cox_hap2	2459409	2459410	rs3094084	25827949	Kunz M	2015-05-04	Exp Dermatol	Genome-wide association study identifies new susceptibility loci for cutaneous lupus erythematosus.	Cutaneous lupus erythematosus	151 European ancestry cases, 1,288 European ancestry controls	219 European ancestry cases, 262 European ancestry controls	6p21.33	MUC21, TRIM39, RPP21	rs3094084-T	0.154	2E-11		2.3	[1.76-3.01]	Affymetrix [906600]	N
603	chr6_cox_hap2	2461949	2461950	rs2844678	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	683 Turkish ancestry cases, 1,721 Turkish ancestry controls	NA	6p21.33	MUC21	rs2844678-?	NR	2E-42				Illumina [4495750] (imputed)	N
603	chr6_cox_hap2	2461949	2461950	rs2844678	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	286 European ancestry cases, 2,652 European ancestry controls, 76 Han Chinese ancestry cases, 889 Han Chinese ancestry controls, 46 South Asian ancestry cases, 501 South Asian ancestry controls, 683 Turkish ancestry cases, 1,721 Turkish ancestry controls	NA	6p21.33	MUC21	rs2844678-?	NR	6E-47		2.71	NR	Illumina [up to 4495750] (imputed)	N
603	chr6_cox_hap2	2467036	2467037	rs9262397	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Unilateral cleft lip and palate	205 Asian ancestry cases, 315 European ancestry cases, 692 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	6p21.33	NR	rs9262397-?	NR	1E-6		1.75	[1.6-1.91]	Illumina [539000] (imputed)	N
603	chr6_cox_hap2	2470910	2470911	rs13211972	32276964	Shete S	2020-04-10	Cancer Res	A genome-wide association study identifies two novel susceptible regions for squamous cell carcinoma of the head and neck.	Oropharynx cancer	1,144 European ancestry cases, 4,493 European ancestry controls	2,328 European ancestry cases, 3,232 European ancestry controls	6p21.33	MUC21	rs13211972-A	0.05	1E-10		1.55	[1.36-1.77]	Illumina [7858089] (imputed)	N
603	chr6_cox_hap2	2472848	2472849	rs150184132	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs150184132-C	0.961	1E-9				Affymetrix [10369434] (imputed)	N
603	chr6_cox_hap2	2480921	2480922	rs1632862	26379185	Garcia-Etxebarria K	2015-09-17	PLoS One	No Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity.	Severe influenza A (H1N1) infection	49 European ancestry severe cases, 549 European ancestry population controls	NA	6p21.33	MUC21, MUC22	rs1632862-?	0.009311	2E-14		15.2	[6.123-37.73]	Affymetrix [547296]	N
603	chr6_cox_hap2	2481103	2481104	rs9262437	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	683 Turkish ancestry cases, 1,721 Turkish ancestry controls	NA	6p21.33	MUC22	rs9262437-?	NR	5E-31	(conditional on rs2844678)			Illumina [4495750] (imputed)	N
603	chr6_cox_hap2	2481856	2481857	rs6920820	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p21.33		rs6920820-?	NR	2E-9		0.0557301	[0.037-0.074] unit increase	Affymetrix [20259828] (imputed)	N
603	chr6_cox_hap2	2485084	2485085	rs1634719	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs1634719-A	0.697	1E-33				Affymetrix [10369434] (imputed)	N
603	chr6_cox_hap2	2488138	2488139	rs28360974	23551011	Zhao L	2013-04-02	Ann Hum Genet	Genome-wide association study of pre-eclampsia detects novel maternal single nucleotide polymorphisms and copy-number variants in subsets of the Hyperglycemia and Adverse Pregnancy Outcome (HAPO) study cohort.	Preeclampsia	21 Afro-Caribbean cases, 1,010 Afro-Caribbean controls, 50 European ancestry cases, 1,202 European ancestry controls, 62 Hispanic cases, 658 Hispanic controls	NA	6p21.33	MUC21	rs28360974-?	NR	3E-6	(Afro-Caribbean)	10.13	[3.85-26.67]	Illumina [2485249] (imputed)	N
603	chr6_cox_hap2	2488268	2488269	rs149405105	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MUC22	rs149405105-A	NR	2E-8		0.0337227	[0.022-0.045] unit increase	Affymetrix [319769] (imputed)	N
603	chr6_cox_hap2	2488268	2488269	rs149405105	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	MUC22	rs149405105-A	NR	1E-8		0.0343316	[0.023-0.046] unit increase	Affymetrix [319769] (imputed)	N
603	chr6_cox_hap2	2488268	2488269	rs149405105	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.33	MUC22	rs149405105-A	NR	3E-10		0.0380088	[0.026-0.05] unit increase	Affymetrix [321114] (imputed)	N
603	chr6_cox_hap2	2488268	2488269	rs149405105	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	MUC22	rs149405105-A	NR	2E-9		0.0364062	[0.025-0.048] unit increase	Affymetrix [321169] (imputed)	N
604	chr6_cox_hap2	2494008	2494010	rs71757905	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Chickenpox	107,769 European ancestry cases, 15,982 European ancestry controls	NA	6p21.33	NR	rs71757905-?	NR	9E-6		0.1098	[0.062-0.158] unit increase	Illumina [at least 560000] (imputed)	N
604	chr6_cox_hap2	2494461	2494462	rs9394026	29031612	Hirata J	2017-10-12	J Invest Dermatol	Variants at HLA-A, HLA-C, and HLA-DQB1 Confer Risk of Psoriasis Vulgaris in Japanese.	Psoriasis vulgaris	282 Japanese ancestry cases, 426 Japanese ancestry controls	320 Japanese ancestry cases, 1,622 Japanese ancestry controls	6p21.33	HLA	rs9394026-G	0.197	7E-15		1.86	[1.59-2.18]	Illumina [6369185] (imputed)	N
604	chr6_cox_hap2	2496386	2496387	rs3869097	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.33		rs3869097-T	0.32183300000000004	2E-7		1.0237832	[1.01-1.03]	Affymetrix, Illumina [9851866] (imputed)	N
604	chr6_cox_hap2	2497744	2497745	rs1634726	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental longevity (mother's age at death)	52,776 middle-aged British individuals	NA	6p21.33	NR	rs1634726-?	NR	6E-6		0.032105	[0.018-0.046] unit increase	Affymetrix [9658292] (imputed)	N
604	chr6_cox_hap2	2499903	2499904	rs1632870	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MUC22	rs1632870-T	NR	5E-8		0.0227309	[0.015-0.031] unit increase	Affymetrix [323123] (imputed)	N
604	chr6_cox_hap2	2500938	2500939	rs139141104	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 142,336 Japanese ancestry controls	NA	6p21.33	MUC22	rs139141104-?	NR	1E-18		0.16637	[0.13-0.2] unit increase	Illumina [19707525] (imputed)	N
604	chr6_cox_hap2	2501609	2501610	rs114115115	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.33		rs114115115-T	0.937	4E-16				Affymetrix [10369434] (imputed)	N
604	chr6_cox_hap2	2501609	2501610	rs114115115	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cervical cancer	6,563 European ancestry cases, 410,350 European ancestry controls	NA	6p21.33		rs114115115-T	NR	6E-13		1.3463	NR	Affymetrix [7846216] (imputed)	N
604	chr6_cox_hap2	2501936	2501937	rs9380210	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.33		rs9380210-A	0.72	1E-24				Affymetrix [10369434] (imputed)	N
604	chr6_cox_hap2	2501936	2501937	rs9380210	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.33		rs9380210-A	0.72	7E-16				Affymetrix [10369434] (imputed)	N
604	chr6_cox_hap2	2501936	2501937	rs9380210	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p21.33		rs9380210-A	0.72	5E-18				Affymetrix [10369434] (imputed)	N
604	chr6_cox_hap2	2501972	2501973	rs1634729	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	118,886 East Asian ancestry individuals	NA	6p21.33		rs1634729-C	0.950931	3E-9		0.0534033	[0.036-0.071] unit decrease	Illumina [13474352] (imputed)	N
604	chr6_cox_hap2	2501972	2501973	rs1634729	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MUC22	rs1634729-T	NR	3E-9		0.0248876	[0.017-0.033] unit decrease	Affymetrix [319769] (imputed)	N
604	chr6_cox_hap2	2501972	2501973	rs1634729	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	MUC22	rs1634729-T	NR	6E-9		0.0242344	[0.016-0.032] unit decrease	Affymetrix [319769] (imputed)	N
604	chr6_cox_hap2	2501998	2501999	rs116071718	31066027	Nicoletti P	2019-05-07	Clin Pharmacol Ther	Shared genetic risk factors across carbamazepine-induced hypersensitivity reactions.	Carbamazepine-induced serious cutaneous adverse reaction	43 European ancestry cases, 10,701 European ancestry controls	NA	6p21.33	MUC22	rs116071718-?	NR	2E-6	(conditioned on rs192543598)	3.99	[2.25-7.05]	Illumina [5271349] (imputed)	N
604	chr6_cox_hap2	2502693	2502694	rs9394030	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	MUC22	rs9394030-A	NR	7E-9		0.0193287	[0.013-0.026] unit increase	Affymetrix [321169] (imputed)	N
604	chr6_cox_hap2	2504745	2504746	rs1632865	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.33		rs1632865-T	0.584	6E-30				Affymetrix [10369434] (imputed)	N
604	chr6_cox_hap2	2505520	2505521	rs2517554	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.33		rs2517554-C	0.386	7E-33				Affymetrix [10369434] (imputed)	N
604	chr6_cox_hap2	2505834	2505835	rs62399429	33531474	Burton CL	2021-02-02	Transl Psychiatry	Genome-wide association study of pediatric obsessive-compulsive traits: shared genetic risk between traits and disorder.	Obsessive-compulsive traits	5,018 European ancestry children and adolescents	NA	6p21.33	MUC22	rs62399429-?	NR	5E-6		0.131	[0.074-0.188] unit increase	Illumina [7870334] (imputed)	N
604	chr6_cox_hap2	2506910	2506911	rs566731348	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.33	NR	rs566731348-A	0.951	4E-12		1.889	[1.71-2.07]	Illumina [11270530] (imputed)	N
604	chr6_cox_hap2	2509713	2509714	rs9262549	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MUC22	rs9262549-G	NR	2E-14		0.0228763	[0.017-0.029] unit increase	Affymetrix [321016] (imputed)	N
604	chr6_cox_hap2	2509713	2509714	rs9262549	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MUC22	rs9262549-G	NR	4E-18		0.0282059	[0.022-0.035] unit increase	Affymetrix [323123] (imputed)	N
604	chr6_cox_hap2	2510334	2510335	rs12110481	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MUC22	rs12110481-T	NR	2E-14		0.0246712	[0.018-0.031] unit decrease	Affymetrix [323123] (imputed)	N
604	chr6_cox_hap2	2513443	2513444	rs3909113	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Sutterella)	1,068 Japanese ancestry individuals	NA	6p21.33	MUC22	rs3909113-G	0.29	3E-6		0.03	[0.017-0.043] unit decrease	Illumina [6380737] (imputed)	N
604	chr6_cox_hap2	2513518	2513519	rs10947124	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	MUC22	rs10947124-T	NR	2E-9		0.0181143	[0.012-0.024] unit increase	Affymetrix [321169] (imputed)	N
604	chr6_cox_hap2	2513701	2513702	rs59356242	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LRPAP1	5,365 Icelandic ancestry individuals	NA	6p21.33		rs59356242-A	0.0137	2E-11		0.546071	[0.39-0.7] unit increase	Illumina [7506463] (imputed)	N
604	chr6_cox_hap2	2514035	2514036	rs6933349	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6p21.33		rs6933349-?	NR	1E-8		0.926525	[0.9-0.95]	NR [685523]	N
604	chr6_cox_hap2	2514123	2514124	rs7768644	26151496	Chen PL	2015-07-07	Nat Commun	Genetic determinants of antithyroid drug-induced agranulocytosis by human leukocyte antigen genotyping and genome-wide association study.	Thionamide-induced agranulocytosis in Graves' disease	21 East Asian ancestry cases with agranulocytosis, 662 East Asian ancestry cases without agranulocytosis	21 East Asian ancestry cases with agranulocytosis, 546 East Asian ancestry cases without agranulocytosis	6p21.33	HLA	rs7768644-A	0.091	3E-13	(trend)	5.01	[3.1-8.1] (allelic)	Affymetrix [522980]	N
604	chr6_cox_hap2	2514365	2514366	rs28732081	30037793	Haapasalo K	2018-09-21	Infect Immun	The Psoriasis Risk Allele <i>HLA-C*06:02</i> Shows Evidence of Association with Chronic or Recurrent Streptococcal Tonsillitis.	Tonsillitis	95 Finnish cases, 504 Finnish controls	NA	6p21.33	HLA-C, HLA-B	rs28732081-?		6E-6		4.7		Illumina [100000]	N
604	chr6_cox_hap2	2514474	2514475	rs3869098	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs3869098-A	0.528	2E-32				Affymetrix [10369434] (imputed)	N
604	chr6_cox_hap2	2514474	2514475	rs3869098	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MUC22	rs3869098-G	NR	6E-19		0.0251596	[0.02-0.031] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_cox_hap2	2514474	2514475	rs3869098	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MUC22	rs3869098-G	NR	4E-11		0.0207579	[0.015-0.027] unit increase	Affymetrix [323858] (imputed)	N
604	chr6_cox_hap2	2514474	2514475	rs3869098	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	MUC22	rs3869098-G	NR	6E-18		0.0244083	[0.019-0.03] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_cox_hap2	2514474	2514475	rs3869098	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	MUC22	rs3869098-G	NR	6E-10		0.0194883	[0.013-0.026] unit increase	Affymetrix [127266] (imputed)	N
604	chr6_cox_hap2	2514474	2514475	rs3869098	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MUC22	rs3869098-G	NR	1E-13		0.0208831	[0.015-0.026] unit decrease	Affymetrix [321016] (imputed)	N
604	chr6_cox_hap2	2514474	2514475	rs3869098	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MUC22	rs3869098-G	NR	3E-16		0.0252592	[0.019-0.031] unit decrease	Affymetrix [323123] (imputed)	N
604	chr6_cox_hap2	2514474	2514475	rs3869098	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	MUC22	rs3869098-G	NR	2E-15		0.0228249	[0.017-0.028] unit increase	Affymetrix [321169] (imputed)	N
604	chr6_cox_hap2	2514549	2514550	rs4248153	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MUC22	rs4248153-G	NR	3E-11		0.0193381	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_cox_hap2	2514549	2514550	rs4248153	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	MUC22	rs4248153-G	NR	2E-10		0.018489	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_cox_hap2	2514549	2514550	rs4248153	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MUC22	rs4248153-G	NR	2E-15		0.0230515	[0.017-0.029] unit decrease	Affymetrix [321016] (imputed)	N
604	chr6_cox_hap2	2514638	2514639	rs4248154	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.33		rs4248154-C	0.831	5E-19				Affymetrix [10369434] (imputed)	N
604	chr6_cox_hap2	2514638	2514639	rs4248154	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Prostate cancer	10,792 European ancestry cases, 410,350 European ancestry controls	NA	6p21.33		rs4248154-T	NR	4E-8		1.1076651	NR	Affymetrix [7846216] (imputed)	N
604	chr6_cox_hap2	2514638	2514639	rs4248154	21900946	Nakabayashi K	2011-09-08	J Hum Genet	Identification of independent risk loci for Graves' disease within the MHC in the Japanese population.	Graves' disease	1,119 Japanese ancestry cases, 2,718 Japanese ancestry controls	432 Japanese ancestry cases, 1,157 Japanese ancestry controls	6p21.33	MHC	rs4248154-C	0.54	1E-13		1.38	[1.27-1.50]	Perlegen [268068]	N
604	chr6_cox_hap2	2515490	2515491	rs34416364	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6p21.33	NR	rs34416364-G	0.90442	8E-9		1.0608954	[1.04-1.08]	Affymetrix [15688218] (imputed)	N
604	chr6_cox_hap2	2515490	2515491	rs34416364	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	6p21.33	NR	rs34416364-?	NR	4E-6		0.0711	[0.041-0.101] unit decrease	Illumina [at least 560000] (imputed)	N
604	chr6_cox_hap2	2517453	2517454	rs11753208	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	MUC22	rs11753208-T	0.08492462	2E-13	(EA, MHC class I polypeptide-related sequence A)	0.5826	[0.43-0.74] unit decrease	Affymetrix [509946]	N
604	chr6_cox_hap2	2517485	2517486	rs9262555	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	6p21.33	NR	rs9262555-?	NR	6E-13		7.194	NR z score decrease	Illumina [at least 830937] (imputed)	N
604	chr6_cox_hap2	2517511	2517512	rs141397370	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LRPAP1	5,361 Icelandic ancestry individuals	NA	6p21.33		rs141397370-T	0.01079	3E-25		0.911048	[0.74-1.08] unit increase	Illumina [7506463] (imputed)	N
604	chr6_cox_hap2	2517747	2517748	rs2844670	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MUC22	rs2844670-G	NR	2E-9		0.0247626	[0.017-0.033] unit increase	Affymetrix [323123] (imputed)	N
604	chr6_cox_hap2	2518876	2518877	rs2844665	21801394	Genin E	2011-07-29	Orphanet J Rare Dis	Genome-wide association study of Stevens-Johnson Syndrome and Toxic Epidermal Necrolysis in Europe.	Drug-induced Stevens-Johnson syndrome or toxic epidermal necrolysis (SJS/TEN)	424 European ancestry cases, 1,881 European ancestry controls	NA	6p21.33	C6orf205	rs2844665-C	0.62	3E-7		1.54	[1.30-1.82]	Illumina [268914]	N
604	chr6_cox_hap2	2519015	2519016	rs9262558	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Osteoporosis	8,520 European ancestry cases, 479,981 European ancestry controls, 9,794 East Asian ancestry cases, 168,932 East Asian ancestry controls	NA	6p21.33		rs9262558-T	NR	3E-8		0.1429	[0.092-0.194] unit decrease	Affymetrix, Illumina [25844994] (imputed)	N
604	chr6_cox_hap2	2519145	2519146	rs115730672	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Treatment or medication use - insulin product (UKB data field 20003_1140883066)	4,469 European ancestry cases, 451,807 European ancestry controls	NA	6p21.33		rs115730672-C	0.005712	3E-11		1.05	[0.74-1.36] unit increase	NR [11842647] (imputed)	N
604	chr6_cox_hap2	2525021	2525022	rs116353863	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	6p21.33	MHC	rs116353863-C	0.0165	9E-9		1.2	[1.13-1.27]	Affymetrix, Illumina [16900397] (imputed)	N
604	chr6_cox_hap2	2526747	2526747	rs770655224	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.33	MUC22	rs770655224-G	0.8871	4E-7		0.0673	[0.041-0.093] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
604	chr6_cox_hap2	2526766	2526767	rs12528596	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	6p21.33	Intergenic	rs12528596-T	NR	1E-7		0.0242361	[0.015-0.033] unit decrease	Illumina [13519193] (imputed)	N
604	chr6_cox_hap2	2527020	2527021	rs10456389	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MUC22	rs10456389-T	NR	2E-9		0.0238148	[0.016-0.032] unit decrease	Affymetrix [321016] (imputed)	N
604	chr6_cox_hap2	2528102	2528103	rs17190106	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)(bidirectional)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.33		rs17190106-G	NR	2E-10				Affymetrix [7846216] (imputed)	N
604	chr6_cox_hap2	2530931	2530932	rs73727186	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	6p21.33	HCG22, MUC22, MUC21, C6orf15, PSORS1C1, CDSN, PSORS1C2, CCHCR1, DPCR1, TCF19, POU5F1, SFTA2, VARS2, PSORS1C3, GTF2H4, DDR1, HCG27, MIR4640	rs73727186-?		6E-6	(heterogeneous)	0.235	[0.13-0.34] unit increase	Illumina [1492601] (imputed)	N
604	chr6_cox_hap2	2530931	2530932	rs73727186	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	6p21.33	HCG22, MUC22, MUC21, C6orf15, PSORS1C1, CDSN, PSORS1C2, CCHCR1, DPCR1, TCF19, POU5F1, SFTA2, VARS2, PSORS1C3, GTF2H4, DDR1, HCG27, MIR4640	rs73727186-?		5E-6	(dominant)	0.233	[-0.43732-0.90332] unit increase	Illumina [1492601] (imputed)	N
604	chr6_cox_hap2	2531718	2531719	rs2251830	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	6p21.33	HCG22	rs2251830-A	0.36	5E-22		0.053	[0.041-0.065] unit increase	Affymetrix, Illumina [2704730] (imputed)	N
604	chr6_cox_hap2	2533148	2533149	rs2517532	22493691	Eriksson N	2012-04-06	PLoS One	Novel associations for hypothyroidism include known autoimmune risk loci.	Hypothyroidism	3,736 European ancestry cases, 35,546 European ancestry controls	NA	6p21.33	HLA-C, LOC729792, HCG22, C6orf15, DHFRP2, HCP5, HLA-B	rs2517532-G	0.597	1E-8		1.16	[1.10-1.22]	Illumina [870065]	N
604	chr6_cox_hap2	2533287	2533288	rs2523864	25813999	Jeong S	2015-04-01	Invest Ophthalmol Vis Sci	Identification of a Novel Mucin Gene HCG22 Associated With Steroid-Induced Ocular Hypertension.	Change in intraocular pressure in response to steroid treatment (triamcinolone acetonide)	64 European ancestry individuals	49 European ancestry individuals	6p21.33	HCG22, HLA-A, HLA-B, MUC22	rs2523864-T	0.412	5E-9				Illumina [1545328]	N
604	chr6_cox_hap2	2535014	2535015	rs9262602	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p21.33	NR	rs9262602-G	0.132	2E-8	(IFNAR2_of_CD20p)			Illumina [5084123] (imputed)	N
604	chr6_cox_hap2	2535271	2535272	rs77203474	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Antisaccade task score	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	6p21.33	HCG22	rs77203474-A	NR	3E-6		0.1378235	[0.079-0.197] unit decrease	Illumina [> 6200000] (imputed)	N
604	chr6_cox_hap2	2535638	2535639	rs4713428	26584805	Dorajoo R	2015-11-19	Genes Nutr	A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.	Plasma omega-3 polyunsaturated fatty acid level (eicosapentaenoic acid)	717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls	NA	6p21.33	NR	rs4713428-G	0.294	7E-6		0.0854	[0.048-0.123] unit decrease	Illumina [up to 1980188] (imputed)	N
604	chr6_cox_hap2	2536863	2536864	rs2523855	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCG22	rs2523855-C	NR	2E-10		0.0207136	[0.014-0.027] unit decrease	Affymetrix [323123] (imputed)	N
604	chr6_cox_hap2	2537533	2537534	rs2905757	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCG22	rs2905757-T	NR	5E-12		0.0207441	[0.015-0.027] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_cox_hap2	2537533	2537534	rs2905757	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HCG22	rs2905757-T	NR	3E-11		0.0199898	[0.014-0.026] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_cox_hap2	2537533	2537534	rs2905757	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCG22	rs2905757-T	NR	3E-8		0.0166947	[0.011-0.023] unit decrease	Affymetrix [321016] (imputed)	N
604	chr6_cox_hap2	2539307	2539308	rs9262631	26151496	Chen PL	2015-07-07	Nat Commun	Genetic determinants of antithyroid drug-induced agranulocytosis by human leukocyte antigen genotyping and genome-wide association study.	Thionamide-induced agranulocytosis in Graves' disease	21 East Asian ancestry cases with agranulocytosis, 662 East Asian ancestry cases without agranulocytosis	21 East Asian ancestry cases with agranulocytosis, 546 East Asian ancestry cases without agranulocytosis	6p21.33	HLA	rs9262631-A	0.063	6E-19	(trend)	7.09	[4.32-11.63] (allelic)	Affymetrix [522980]	N
604	chr6_cox_hap2	2539514	2539515	rs9262632	21051598	Pereyra F	2010-11-04	Science	The major genetic determinants of HIV-1 control affect HLA class I peptide presentation.	HIV-1 control	516 European cases, 1,196 European controls, 341 African American cases, 892 African American controls, 117 Hispanic cases, 560 Hispanic controls	NA	6p21.33	intergenic	rs9262632-G	0.10	1E-8	(AA)	3.1	[NR]	Illumina [1384048] (imputed)	N
604	chr6_cox_hap2	2540942	2540943	rs76541615	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	6p21.33	MHC-region	rs76541615-T	0.796	1E-17		1.08	[1.06-1.09]	Affymetrix, Illumina [11800000] (imputed)	N
604	chr6_cox_hap2	2542042	2542043	rs2517521	32589924	Bi W	2020-06-23	Am J Hum Genet	A Fast and Accurate Method for Genome-Wide Time-to-Event Data Analysis and Its Application to UK Biobank.	Hyperlipidemia (time to event)	35,623 British ancestry cases, 247,248 British ancestry controls	NA	6p21.33	HCG22	rs2517521-?	NR	3E-8				NR [~ 24000000] (imputed)	N
604	chr6_cox_hap2	2542042	2542043	rs2517521	32589924	Bi W	2020-06-23	Am J Hum Genet	A Fast and Accurate Method for Genome-Wide Time-to-Event Data Analysis and Its Application to UK Biobank.	Essential hypertension (time to event)	76,566 British ancestry cases, 206,305 British ancestry controls	NA	6p21.33	HCG2248	rs2517521-?	NR	4E-8				NR [~ 24000000] (imputed)	N
604	chr6_cox_hap2	2542275	2542276	rs78725346	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.33	NR	rs78725346-A	0.01045	3E-8	(CKB)	0.03173	NR unit increase	Illumina [1671387] (imputed)	N
604	chr6_cox_hap2	2543988	2543989	rs2523842	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCG22	rs2523842-A	NR	2E-9		0.0493584	[0.033-0.066] unit decrease	Affymetrix [321016] (imputed)	N
604	chr6_cox_hap2	2544161	2544162	rs9262651	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HCG22	rs9262651-T	NR	3E-11		0.0220473	[0.016-0.029] unit increase	Affymetrix [321169] (imputed)	N
604	chr6_cox_hap2	2544828	2544829	rs2517510	21738480	Nalls MA	2011-07-01	PLoS Genet	Multiple loci are associated with white blood cell phenotypes.	White blood cell count	19,509 European ancestry individuals	11,823 European ancestry individuals	6p21.33	PSORS1C1, MUC21, HCG22, C6orf15, CCHCR1, CDSN, PSORS1C2	rs2517510-T		4E-13	(WBC)	0.0129	[0.0094-0.0164] unit decrease	Affymetrix, Illumina [> 2400000] (imputed)	N
604	chr6_cox_hap2	2548349	2548350	rs149917912	33841421	Li J	2021-03-25	Front Immunol	Variants at the MHC Region Associate With Susceptibility to <i>Clostridioides difficile</i> Infection: A Genome-Wide Association Study Using Comprehensive Electronic Health Records.	Clostridioides difficle infection	1,160 European ancestry cases, 14,144 European ancestry controls	NA	6p21.33	NR	rs149917912-C	0.0242	5E-6		1.67	[1.37-2]	Illumina [64973696] (imputed)	N
604	chr6_cox_hap2	2549037	2549038	rs75056122	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.33	NR	rs75056122-T	0.01045	3E-8	(CKB)	0.03173	NR unit increase	Illumina [1671387] (imputed)	N
604	chr6_cox_hap2	2549301	2549302	rs3094089	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCG22	rs3094089-C	NR	1E-9		0.021023	[0.014-0.028] unit decrease	Affymetrix [323858] (imputed)	N
604	chr6_cox_hap2	2549301	2549302	rs3094089	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HCG22	rs3094089-C	NR	7E-9		0.0200851	[0.013-0.027] unit decrease	Affymetrix [127266] (imputed)	N
604	chr6_cox_hap2	2549897	2549898	rs3132567	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HCG22	rs3132567-T	NR	3E-8		0.0202317	[0.013-0.027] unit decrease	Affymetrix [319769] (imputed)	N
604	chr6_cox_hap2	2550258	2550259	rs192064582	32141793	Garman L	2020-03-06	Ocul Immunol Inflamm	Genome-Wide Association Study of Ocular Sarcoidosis Confirms HLA Associations and Implicates Barrier Function and Autoimmunity in African Americans.	Ocular sarcoidosis	260 African American cases, 1,551 African American controls	NA	6p21.33	NR	rs192064582-T	NR	8E-6		1.747	[1.37-2.23]	Illumina [13976150] (imputed)	N
604	chr6_cox_hap2	2550278	2550279	rs184099286	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	QRS duration	3,274 African American individuals, 13,420 Hispanic/Latino individuals, 126 Asian ancestry individuals, 226 Native American ancestry individuals	NA	6p21.33	HCG22	rs184099286-?	NR	5E-9	(Hispanic/Latino)	1.17582	[0.78-1.57] unit decrease	Illumina [26566045] (imputed)	N
604	chr6_cox_hap2	2555358	2555358	rs145214406	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.33	NR	rs145214406-CAA	0.012	1E-12		0.593265	[0.43-0.76] unit increase	Affymetrix [up to 8900000] (imputed)	N
604	chr6_cox_hap2	2558634	2558635	rs2517481	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Growth differentiation factor-15 levels	21,758 European ancestry individuals	9,173 individuals	6p21.33		rs2517481-C	0.41	3E-9		0.0481	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
604	chr6_cox_hap2	2561197	2561198	rs2517474	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small LDL	115,082 European ancestry individuals	NA	6p21.33		rs2517474-G	0.542926	2E-8		0.023198	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
604	chr6_cox_hap2	2561197	2561198	rs2517474	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium LDL	115,082 European ancestry individuals	NA	6p21.33		rs2517474-G	0.542926	1E-9		0.0250618	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
604	chr6_cox_hap2	2561197	2561198	rs2517474	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium LDL	115,082 European ancestry individuals	NA	6p21.33		rs2517474-G	0.542926	7E-9		0.0240182	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
604	chr6_cox_hap2	2561197	2561198	rs2517474	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small LDL	115,082 European ancestry individuals	NA	6p21.33		rs2517474-G	0.542926	3E-8		0.0228734	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
604	chr6_cox_hap2	2561197	2561198	rs2517474	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	6p21.33		rs2517474-G	0.542926	2E-9		0.0247017	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
604	chr6_cox_hap2	2561197	2561198	rs2517474	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	RNU6-1133P	rs2517474-A	NR	8E-10		0.0173534	[0.012-0.023] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_cox_hap2	2561197	2561198	rs2517474	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	RNU6-1133P	rs2517474-A	NR	9E-9		0.0162462	[0.011-0.022] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_cox_hap2	2561197	2561198	rs2517474	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	RNU6-1133P	rs2517474-A	NR	7E-9		0.0163369	[0.011-0.022] unit decrease	Affymetrix [321016] (imputed)	N
604	chr6_cox_hap2	2561197	2561198	rs2517474	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	RNU6-1133P	rs2517474-A	NR	3E-9		0.0169233	[0.011-0.023] unit increase	Affymetrix [321169] (imputed)	N
604	chr6_cox_hap2	2562918	2562919	rs373537558	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	6p21.33	RNU6-1133P	rs373537558-A	0.9873	1E-12		0.0855	[0.062-0.109] unit increase	Affymetrix [18391927] (imputed)	N
604	chr6_cox_hap2	2565051	2565052	rs9263475	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4 on CD39+ secreting CD4 regulatory T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs9263475-G	0.51353	1E-12		0.2076	[0.15-0.26] unit increase	Illumina [17954496] (imputed)	N
604	chr6_cox_hap2	2565051	2565052	rs9263475	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.33	Intergenic	rs9263475-G	NR	6E-9	(women)	0.0308596	[0.02-0.041] unit decrease	Illumina [13520550] (imputed)	N
604	chr6_cox_hap2	2565051	2565052	rs9263475	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.33	Intergenic	rs9263475-G	NR	2E-9		0.0221293	[0.015-0.029] unit decrease	Illumina [13520550] (imputed)	N
604	chr6_cox_hap2	2567335	2567336	rs28732092	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p21.33	NR	rs28732092-T	0.0787	5E-7		0.011	[0.0067-0.0153] unit increase	NR [7666894] (imputed)	N
604	chr6_cox_hap2	2568444	2568445	rs2535307	28132517	Xie W	2017-01-28	AIDS Res Hum Retroviruses	Genome-Wide Analyses Reveal Gene Influence on HIV Disease Progression and HIV-1C Acquisition in Southern Africa.	HIV progression (CD4 and viral load)	556 Motswana ancestry cases	NA	6p21.33	HCG22	rs2535307-C	0.48	4E-7				Illumina [NR]	N
604	chr6_cox_hap2	2569084	2569085	rs2535305	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	RNU6-1133P	rs2535305-G	NR	8E-10		0.0178493	[0.012-0.024] unit increase	Affymetrix [321169] (imputed)	N
604	chr6_cox_hap2	2569721	2569722	rs12527394	29534301	Nishida N	2018-03-13	Hepatology	Key HLA-DRB1-DQB1 haplotypes and role of the BTNL2 gene for response to a hepatitis B vaccine.	Response to hepatitis B vaccine	107 Japanese ancestry low responder individuals, 351 Japanese ancestry intermediate responder individuals, 735 Japanese ancestry high responder individuals	NA	6p21.33	C6orf15	rs12527394-?		5E-8		0.174	unit decrease	Affymetrix [427664]	N
604	chr6_cox_hap2	2572866	2572867	rs4947296	31050781	Zhao SX	2019-05-03	JAMA Netw Open	Assessment of Molecular Subtypes in Thyrotoxic Periodic Paralysis and Graves Disease Among Chinese Han Adults: A Population-Based Genome-Wide Association Study.	Thyrotoxic hypokalemic periodic paralysis and Graves disease	171 Han Chinese ancestry cases, 2,160 Han Chinese ancestry controls	362 Han Chinese ancestry cases, 1,089 Han Chinese ancestry controls	6p21.33	C6orf15	rs4947296-?	0.14	3E-22		2.06	[1.77-2.39]	Illumina [2752055] (imputed)	N
604	chr6_cox_hap2	2572866	2572867	rs4947296	23001997	Hou S	2012-12-06	Arthritis Rheum	Identification of a susceptibility locus in STAT4 for Behcet's disease in Han Chinese in a genome-wide association study.	Behcet's disease	147 Han Chinese ancestry cases, 951 Han Chinese ancestry controls	554 Han Chinese ancestry cases, 1,159 Han Chinese ancestry controls	6p21.33	HCG22	rs4947296-?	NR	1E-11		2.57	[1.96-3.37]	Affymetrix [661736]	N
604	chr6_cox_hap2	2572866	2572867	rs4947296	21841780	Chu X	2011-08-14	Nat Genet	A genome-wide association study identifies two new risk loci for Graves' disease.	Graves' disease	1,468 Chinese ancestry cases, 1,490 Chinese ancestry controls	3,994 Chinese ancestry cases, 3,510 Chinese ancestry controls	6p21.33	MUC21, C6orf15	rs4947296-C	0.14	4E-51		1.77	[1.65-1.91]	Illumina [486049]	N
604	chr6_cox_hap2	2573028	2573029	rs3130544	23263863	Li J	2012-12-20	Hum Mol Genet	GWAS of blood cell traits identifies novel associated loci and epistatic interactions in Caucasian and African-American children.	Hematology traits	7,943 African American children, 6,234 European ancestry children	NA	6p21.33	PSORS1C1, MUC21, HCG22, C6orf15, CCHCR1, CDSN, PSORS1C2	rs3130544-A	NR	5E-7	(WBC)	0.0189	[0.011-0.026] unit decrease	Illumina [544917]	N
604	chr6_cox_hap2	2573028	2573029	rs3130544	23055271	Gregersen PK	2012-07-16	Ann Neurol	Risk for myasthenia gravis maps to a (151) Pro->Ala change in TNIP1 and to human leukocyte antigen-B*08.	Myasthenia gravis	400 European ancestry cases, 5,505 European ancestry controls	249 European ancestry cases, 3,415 European ancestry controls	6p21.33	NR	rs3130544-A	0.13	2E-90		5.64	[4.77-6.67]	Illumina [274256]	N
604	chr6_cox_hap2	2573028	2573029	rs3130544	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.33	intergenic	rs3130544-A	0.1238	9E-58		3.34	[NR]	Illumina [242824]	N
604	chr6_cox_hap2	2574150	2574151	rs2535298	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p21.33	NR	rs2535298-?	NR	1E-6		0.0761	[0.046-0.107] unit increase	Illumina [at least 560000] (imputed)	N
604	chr6_cox_hap2	2574907	2574908	rs2535296	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p21.33	NR	rs2535296-?	NR	3E-12		0.0858	[0.062-0.11] unit decrease	Illumina [at least 560000] (imputed)	N
604	chr6_cox_hap2	2576257	2576258	rs3094087	33227023	Wang Y	2020-11-23	PLoS Genet	Genome-wide association study identifies 16 genomic regions associated with circulating cytokines at birth.	IgA levels	8,318 European ancestry individuals	NA	6p21.33	HLA	rs3094087-T	0.15	2E-10		0.1	[0.080-0.120] unit increase	Illumina [~ 9000000] (imputed)	N
604	chr6_cox_hap2	2578124	2578125	rs3130967	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	RNU6-1133P	rs3130967-T	NR	2E-9		0.0334393	[0.023-0.044] unit increase	Affymetrix [323123] (imputed)	N
604	chr6_cox_hap2	2579751	2579752	rs146508039	33841421	Li J	2021-03-25	Front Immunol	Variants at the MHC Region Associate With Susceptibility to <i>Clostridioides difficile</i> Infection: A Genome-Wide Association Study Using Comprehensive Electronic Health Records.	Clostridioides difficle infection in antibiotics-users	587 European ancestry cases, 3,166 European ancestry controls	NA	6p21.33	NR	rs146508039-T	0.025	5E-7		2.24	[1.7-2.88]	Illumina [64973696] (imputed)	N
604	chr6_cox_hap2	2579785	2579786	rs3130968	34601942	van Zuydam NR	2021-10-04	Circ Genom Precis Med	Genome-Wide Association Study of Peripheral Artery Disease.	Peripheral artery disease	12,086 European ancestry cases, 449,548 European ancestry controls	31,307 cases, 211,753 controls, 3,164 East Asian ancestry cases, 20,134 East Asian ancestry controls	6p21.33		rs3130968-T	0.19	3E-12		1.07	[1.05-1.09]	Affymetrix, Illumina [NR] (imputed)	N
604	chr6_cox_hap2	2579785	2579786	rs3130968	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	C6orf15	rs3130968-T	NR	4E-9		0.0219861	[0.015-0.029] unit decrease	Affymetrix [319769] (imputed)	N
604	chr6_cox_hap2	2579785	2579786	rs3130968	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	C6orf15	rs3130968-T	NR	4E-8		0.0204516	[0.013-0.028] unit decrease	Affymetrix [319769] (imputed)	N
604	chr6_cox_hap2	2579785	2579786	rs3130968	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	C6orf15	rs3130968-T	NR	7E-9		0.0218317	[0.014-0.029] unit decrease	Affymetrix [321169] (imputed)	N
604	chr6_cox_hap2	2579785	2579786	rs3130968	31285632	Klarin D	2019-07-08	Nat Med	Genome-wide association study of peripheral artery disease in the Million Veteran Program.	Peripheral artery disease	24,009 European ancestry cases, 150,983 European ancestry controls, 5,373 African ancestry cases, 42,485 African ancestry controls, 1,925 Hispanic cases, 18,285 Hispanic controls	5,117 European ancestry cases, 389,291 European ancestry controls	6p21.33	HLA-B	rs3130968-T	0.1371	3E-10		1.07	[1.05-1.10]	Affymetrix [at least 20323458] (imputed)	N
604	chr6_cox_hap2	2579831	2579832	rs149396823	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	6p21.33		rs149396823-A	0.00992199999999999	1E-11		0.07646505	[0.054-0.099] unit increase	Affymetrix [93095623] (imputed)	N
604	chr6_cox_hap2	2581352	2581353	rs144846110	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p21.33	C6orf15	rs144846110-G	NR	1E-10		0.0272233	[0.019-0.036] unit decrease	Affymetrix [323858] (imputed)	N
604	chr6_cox_hap2	2581976	2581977	rs9263523	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Prostate cancer	11,599 European ancestry cases, 199,628 European ancestry controls, 5,672 East Asian ancestry cases, 84,660 East Asian ancestry controls	NA	6p21.33		rs9263523-T	NR	1E-10		0.0949	[0.066-0.124] unit decrease	Affymetrix, Illumina [25775424] (imputed)	N
604	chr6_cox_hap2	2582262	2582263	rs4371876	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4 on HLA DR+ CD4+ T cell	3,060 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs4371876-A	0.51058	2E-10		0.1831	[0.13-0.24] unit increase	Illumina [18012714] (imputed)	N
604	chr6_cox_hap2	2582705	2582705	rs200788140	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4 on activated CD4 regulatory T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs200788140-AT	0.35258	7E-11		0.2109	[0.15-0.27] unit increase	Illumina [17954496] (imputed)	N
604	chr6_cox_hap2	2582705	2582705	rs200788140	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4 on CD39+ activated CD4 regulatory T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs200788140-AT	0.35258	8E-15		0.2502	[0.19-0.31] unit increase	Illumina [17954496] (imputed)	N
604	chr6_cox_hap2	2584225	2584226	rs9263567	21844884	Wheeler HE	2011-08-16	Pharmacogenomics J	Genome-wide meta-analysis identifies variants associated with platinating agent susceptibility across populations.	Response to platinum-based chemotherapy (cisplatin)	176 Sub-Saharan African ancestry lymphoblastoid cell lines, 83 African ancestry lymphoblastoid cell lines, 175 East Asian ancestry lymphoblastoid cell lines, 174 European ancestry lymphoblastoid cell lines	NA	6p21.33	intergenic	rs9263567-?		5E-6				NR [~ 3000000] (imputed)	N
604	chr6_cox_hap2	2584225	2584226	rs9263567	21844884	Wheeler HE	2011-08-16	Pharmacogenomics J	Genome-wide meta-analysis identifies variants associated with platinating agent susceptibility across populations.	Response to platinum-based chemotherapy (carboplatin)	176 Sub-Saharan African ancestry lymphoblastoid cell lines, 83 African ancestry lymphoblastoid cell lines, 175 East Asian ancestry lymphoblastoid cell lines, 174 European ancestry lymphoblastoid cell lines	NA	6p21.33	intergenic	rs9263567-?		2E-6				NR [~ 3000000] (imputed)	N
604	chr6_cox_hap2	2587798	2587799	rs9263622	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.33		rs9263622-T	0.603	5E-29				Affymetrix [10369434] (imputed)	N
604	chr6_cox_hap2	2588742	2588743	rs6457327	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Prostate cancer	7,438 White British ancestry cases, 118,206 White British ancestry controls	NA	6p21.33		rs6457327-?	NR	5E-8		1.1003	[1.07-1.13]	NR [680312]	N
604	chr6_cox_hap2	2588742	2588743	rs6457327	20639881	Conde L	2010-07-18	Nat Genet	Genome-wide association study of follicular lymphoma identifies a risk locus at 6p21.32.	Follicular lymphoma	681 European ancestry cases, 750 European ancestry controls	up to 3,164 European ancestry cases, 6,208 European ancestry controls	6p21.33	C6orf15	rs6457327-C	0.56	7E-6	(FL)	1.47	[1.27-1.72]	Illumina [312768]	N
604	chr6_cox_hap2	2588742	2588743	rs6457327	19620980	Skibola CF	2009-07-20	Nat Genet	Genetic variants at 6p21.33 are associated with susceptibility to follicular lymphoma.	Follicular lymphoma	189 European ancestry cases, 592 European controls	456 European ancestry cases, 2,785 European ancestry controls	6p21.33	STG, PSORS1	rs6457327-C	0.62	5E-11		1.69	[1.43-2.00]	Illumina [~ 500000]	N
604	chr6_cox_hap2	2591942	2591943	rs2517473	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	6p21.33	C6orf15	rs2517473-C	0.92125	2E-8		0.0215969	[0.014-0.029] unit decrease	Affymetrix [NR] (imputed)	N
604	chr6_cox_hap2	2593318	2593319	rs1265057	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p21.33	C6orf15	rs1265057-C	0.491	2E-6		0.053	[0.031-0.075] unit decrease	Affymetrix, Illumina [7374092] (imputed)	N
604	chr6_cox_hap2	2593512	2593513	rs3132556	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	6p21.33	NR	rs3132556-A	0.150099	4E-8		0.048321012	[0.031-0.066] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
604	chr6_cox_hap2	2593512	2593513	rs3132556	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	6p21.33	NR	rs3132556-T	0.184341545793891	8E-15		0.012361368	[0.0092-0.0155] unit decrease	NR [NR]	N
604	chr6_cox_hap2	2593512	2593513	rs3132556	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	6p21.33	NR	rs3132556-T	0.184341545793891	2E-14		0.015899843	[0.012-0.02] unit decrease	NR [NR]	N
604	chr6_cox_hap2	2593512	2593513	rs3132556	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	6p21.33	NR	rs3132556-T	0.184341545793891	9E-15		0.010477979	[0.0078-0.0131] unit decrease	NR [NR]	N
604	chr6_cox_hap2	2593512	2593513	rs3132556	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.33	ATP6V1G2, ATP6V1G2-DDX39B, C6orf15, CCHCR1, CDSN, DDR1, DDX39B, DPCR1, FLOT1, GTF2H4, HCG22, HCG26, HCG27, HCP5, HLA-B, HLA-C, IER3, LINC00243, LTA, MCCD1, MICA, MICB, MIR4640, MIR6891, MUC21, MUC22, NFKBIL1, POU5F1, PSORS1C1, PSORS1C2, PSORS1C3, SFTA2, SNORD117, SNORD84, TCF19, TNF, TUBB, VARS2	rs3132556-A		1E-9		1.08	[1.05-1.11]	Affymetrix, Illumina [NR]	N
604	chr6_cox_hap2	2594347	2594348	rs2233980	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	6p21.33	NR	rs2233980-A	0.130672432110858	1E-18		0.01198786	[0.0093-0.0147] unit decrease	NR [NR]	N
604	chr6_cox_hap2	2594719	2594720	rs2233974	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	C6orf15	rs2233974-G	NR	3E-9		0.020957	[0.014-0.028] unit increase	Affymetrix [321016] (imputed)	N
604	chr6_cox_hap2	2594719	2594720	rs2233974	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p21.33	C6orf15	rs2233974-C	0.377	8E-27				Illumina [118177]	N
604	chr6_cox_hap2	2595407	2595408	rs1265051	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	C6orf15	rs1265051-G	NR	2E-8		0.0200002	[0.013-0.027] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_cox_hap2	2595407	2595408	rs1265051	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	C6orf15	rs1265051-G	NR	4E-8		0.0193546	[0.012-0.026] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_cox_hap2	2595908	2595909	rs2233956	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	C6orf15	rs2233956-C	NR	9E-13		0.0241887	[0.018-0.031] unit decrease	Affymetrix [319769] (imputed)	N
604	chr6_cox_hap2	2595908	2595909	rs2233956	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	C6orf15	rs2233956-C	NR	3E-18		0.0327829	[0.025-0.04] unit decrease	Affymetrix [323858] (imputed)	N
604	chr6_cox_hap2	2595908	2595909	rs2233956	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	C6orf15	rs2233956-C	NR	8E-12		0.0231628	[0.017-0.03] unit decrease	Affymetrix [319769] (imputed)	N
604	chr6_cox_hap2	2595908	2595909	rs2233956	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	C6orf15	rs2233956-C	NR	2E-17		0.0319326	[0.025-0.039] unit decrease	Affymetrix [127266] (imputed)	N
604	chr6_cox_hap2	2595908	2595909	rs2233956	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	C6orf15	rs2233956-C	NR	9E-10		0.0207055	[0.014-0.027] unit increase	Affymetrix [321016] (imputed)	N
604	chr6_cox_hap2	2595908	2595909	rs2233956	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	C6orf15	rs2233956-C	NR	6E-9		0.0214605	[0.014-0.029] unit increase	Affymetrix [323123] (imputed)	N
604	chr6_cox_hap2	2595908	2595909	rs2233956	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	C6orf15	rs2233956-C	NR	3E-9		0.0203515	[0.014-0.027] unit decrease	Affymetrix [321169] (imputed)	N
604	chr6_cox_hap2	2595908	2595909	rs2233956	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in ever smokers	23,223 European ancestry cases,  16,964 European ancestry controls	NA	6p21.33	C6orf15	rs2233956-C	0.167124691	5E-16		1.1730286	[1.128692308-1.219106364]	Illumina [10439017] (imputed)	N
604	chr6_cox_hap2	2595908	2595909	rs2233956	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.33	intergenic	rs2233956-G	0.1813	6E-48		2.77	[NR]	Illumina [242824]	N
604	chr6_cox_hap2	2595954	2595955	rs2233955	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	C6orf15	rs2233955-A	NR	1E-9		0.0215169	[0.015-0.028] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_cox_hap2	2595954	2595955	rs2233955	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	C6orf15	rs2233955-A	NR	4E-9		0.0208588	[0.014-0.028] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_cox_hap2	2596112	2596113	rs1265048	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	C6orf15	rs1265048-C	NR	1E-8		0.0172428	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_cox_hap2	2596112	2596113	rs1265048	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	C6orf15	rs1265048-C	NR	2E-9		0.0182055	[0.012-0.024] unit decrease	Affymetrix [321016] (imputed)	N
604	chr6_cox_hap2	2596112	2596113	rs1265048	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	C6orf15	rs1265048-C	NR	4E-10		0.0206963	[0.014-0.027] unit decrease	Affymetrix [323123] (imputed)	N
604	chr6_cox_hap2	2596112	2596113	rs1265048	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	C6orf15	rs1265048-C	NR	4E-8		0.0167663	[0.011-0.023] unit increase	Affymetrix [321169] (imputed)	N
604	chr6_cox_hap2	2596112	2596113	rs1265048	32421744	Gzara C	2020-05-18	PLoS Pathog	Family-based genome-wide association study of leprosy in Vietnam.	Leprosy	1,749 Vietnamese ancestry cases	1,181 Vietnamese ancestry cases, 688 Vietnamese ancestry controls	6p21.33	C6orf15	rs1265048-T	0.51	6E-11		1.4492754	[1.25-1.72]	Illumina [5607170] (imputed)	N
604	chr6_cox_hap2	2596112	2596113	rs1265048	30013184	Waage J	2018-07-16	Nat Genet	Genome-wide association and HLA fine-mapping studies identify risk loci and genetic pathways underlying allergic rhinitis.	Allergic sensitization	8,040 European ancestry cases, 16,441 European ancestry controls	NA	6p21.33	C5orf15, PSORS1C1	rs1265048-T	0.64	1E-7		1.1235955	[1.08-1.18]	Affymetrix, Illumina [16531985] (imputed)	N
604	chr6_cox_hap2	2596137	2596138	rs3094222	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Waist-hip ratio and HDL-C (pairwise)	402,477 European ancestry individuals, 11,333 East Asian, South Asian, Hispanic and African American ancestry individuals	NA	6p21.33	C6orf15-PSORS1C1	rs3094222-A	0.9135	1E-11				Affymetrix, Illumina [2331072] (imputed)	N
604	chr6_cox_hap2	2596137	2596138	rs3094222	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	6p21.33	C6orf15, PSORS1C1	rs3094222-G	0.108346341	9E-17		1.1642892	[1.123294727-1.206779842]	Illumina [10439017] (imputed)	N
604	chr6_cox_hap2	2596167	2596168	rs1265047	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	Intergenic	rs1265047-G	0.3485915	2E-17	(EA, MHC class I polypeptide-related sequence A)	0.3847	[0.3-0.47] unit increase	Affymetrix [509946]	N
604	chr6_cox_hap2	2596643	2596644	rs3130976	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	PSORS1C1	rs3130976-C	NR	1E-8		0.0197052	[0.013-0.026] unit decrease	Affymetrix [323858] (imputed)	N
604	chr6_cox_hap2	2596643	2596644	rs3130976	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	PSORS1C1	rs3130976-C	NR	3E-8		0.0190506	[0.012-0.026] unit decrease	Affymetrix [127266] (imputed)	N
604	chr6_cox_hap2	2596643	2596644	rs3130976	32814899	Meyer HV	2020-08-19	Nature	Genetic and functional insights into the fractal structure of the heart.	Myocardial fractal dimension (slice 8)	18,096 European individuals		6p21.33	NR	rs3130976-C	0.28549	3E-8		0.064606	[0.042-0.087] unit increase	Affymetrix [14134301] (imputed)	N
604	chr6_cox_hap2	2596643	2596644	rs3130976	32814899	Meyer HV	2020-08-19	Nature	Genetic and functional insights into the fractal structure of the heart.	Myocardial fractal dimension (slice 7)	18,096 European individuals		6p21.33	NR	rs3130976-C	0.28549	4E-7		0.059143	[0.036-0.082] unit increase	Affymetrix [14134301] (imputed)	N
604	chr6_cox_hap2	2596643	2596644	rs3130976	32814899	Meyer HV	2020-08-19	Nature	Genetic and functional insights into the fractal structure of the heart.	Myocardial fractal dimension (slice 6)	18,096 European individuals		6p21.33	NR	rs3130976-C	0.28549	4E-8		0.064023	[0.041-0.087] unit increase	Affymetrix [14134301] (imputed)	N
604	chr6_cox_hap2	2596643	2596644	rs3130976	32814899	Meyer HV	2020-08-19	Nature	Genetic and functional insights into the fractal structure of the heart.	Myocardial fractal dimension (slice 5)	18,096 European individuals		6p21.33	NR	rs3130976-C	0.28549	1E-8		0.066545	[0.044-0.089] unit increase	Affymetrix [14134301] (imputed)	N
604	chr6_cox_hap2	2596643	2596644	rs3130976	32814899	Meyer HV	2020-08-19	Nature	Genetic and functional insights into the fractal structure of the heart.	Myocardial fractal dimension (slice 4)	18,096 European individuals		6p21.33	NR	rs3130976-C	0.28549	2E-6		0.055881	[0.033-0.079] unit increase	Affymetrix [14134301] (imputed)	N
604	chr6_cox_hap2	2596643	2596644	rs3130976	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	6p21.33	C6orf15, PSORS1C1	rs3130976-T	NR	5E-8		0.124739	[0.08-0.169] unit increase	Illumina [at least 950000] (imputed)	N
604	chr6_cox_hap2	2596900	2596901	rs3130979	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	6p21.33		rs3130979-G	0.655198	1E-8		0.0238702	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
604	chr6_cox_hap2	2597107	2597108	rs3130980	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PSORS1C1	rs3130980-T	NR	1E-8		0.0171125	[0.011-0.023] unit decrease	Affymetrix [321016] (imputed)	N
604	chr6_cox_hap2	2597107	2597108	rs3130980	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	PSORS1C1	rs3130980-T	NR	2E-9		0.01962	[0.013-0.026] unit decrease	Affymetrix [323123] (imputed)	N
604	chr6_cox_hap2	2597989	2597990	rs3094219	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PSORS1C1, CDSN	rs3094219-A	NR	1E-8		0.0159832	[0.01-0.022] unit decrease	Affymetrix [321016] (imputed)	N
604	chr6_cox_hap2	2600082	2600083	rs3094214	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	PSORS1C1, CDSN	rs3094214-A	NR	8E-11		0.0199471	[0.014-0.026] unit decrease	Affymetrix [323123] (imputed)	N
604	chr6_cox_hap2	2600470	2600471	rs3094212	20139978	Kamatani Y	2010-02-07	Nat Genet	Genome-wide association study of hematological and biochemical traits in a Japanese population.	White blood cell count	14,677 Japanese ancestry individuals	NA	6p21.33	PSORS1C1, CDSN	rs3094212-C	0.35	7E-9		0.07	[0.046-0.094] unit increase	Illumina [561583]	N
604	chr6_cox_hap2	2600524	2600525	rs3819686	29534301	Nishida N	2018-03-13	Hepatology	Key HLA-DRB1-DQB1 haplotypes and role of the BTNL2 gene for response to a hepatitis B vaccine.	Response to hepatitis B vaccine	107 Japanese ancestry low responder individuals, 351 Japanese ancestry intermediate responder individuals, 735 Japanese ancestry high responder individuals	NA	6p21.33	PSORS1C1	rs3819686-?		7E-6		0.15	unit decrease	Affymetrix [427664]	N
604	chr6_cox_hap2	2601124	2601125	rs78479381	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.33		rs78479381-T	0.109186	3E-20		1.0718842	[1.05-1.09]	Affymetrix, Illumina [9851866] (imputed)	N
604	chr6_cox_hap2	2602058	2602059	rs3130991	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	C6orf15, PSORS1C1, CDSN	rs3130991-T	0.3442211	4E-15	(EA, MHC class I polypeptide-related sequence B)	0.3612	[0.27-0.45] unit increase	Affymetrix [509946]	N
604	chr6_cox_hap2	2602849	2602850	rs3095318	27611488	Almoguera B	2016-09-09	Am J Respir Crit Care Med	Identification of Four Novel Loci in Asthma in European American and African American Populations.	Adult asthma	337 African American allergic asthma cases, 321 African American non-allergic asthma cases, 1,367 African American controls, 466 European American allergic asthma cases, 626 European American non-allergic asthma cases, 7,878 European American controls	NA	6p21.33	PSORS1C1	rs3095318-?	NR	7E-8	(EA)			Affymetrix, Illumina [NR] (imputed)	N
604	chr6_cox_hap2	2602849	2602850	rs3095318	27611488	Almoguera B	2016-09-09	Am J Respir Crit Care Med	Identification of Four Novel Loci in Asthma in European American and African American Populations.	Adult asthma	337 African American allergic asthma cases, 321 African American non-allergic asthma cases, 1,367 African American controls, 466 European American allergic asthma cases, 626 European American non-allergic asthma cases, 7,878 European American controls	NA	6p21.33	PSORS1C1	rs3095318-?	NR	2E-11		0.351	[0.25-0.45] unit increase	Affymetrix, Illumina [NR] (imputed)	N
604	chr6_cox_hap2	2602936	2602937	rs2302398	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	152,447 East Asian ancestry individuals	NA	6p21.33		rs2302398-G	0.773065	4E-13		0.026479	[0.019-0.034] unit decrease	Illumina [13478948] (imputed)	N
604	chr6_cox_hap2	2602936	2602937	rs2302398	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	153,015 East Asian ancestry individuals	NA	6p21.33		rs2302398-G	0.773485	9E-11		0.0240481	[0.017-0.031] unit decrease	Illumina [13478961] (imputed)	N
604	chr6_cox_hap2	2603685	2603686	rs6927322	26503584	Litchfield K	2015-10-27	Nat Commun	Identification of four new susceptibility loci for testicular germ cell tumour.	Testicular germ cell tumor	986 European ancestry cases, 4,946 European ancestry controls	4,009 cases, 4,066 controls	6p21.33	NR	rs6927322-T	0.04	6E-6		1.24	[1.08-1.43]	Illumina [~ 8900000] (imputed)	N
604	chr6_cox_hap2	2604413	2604414	rs4410768	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p21.33	CDSN, PSORS1C1	rs4410768-G	0.03	2E-10	(Turkish)	3.52	[2.34-5.30]	Illumina [up to 547389]	N
604	chr6_cox_hap2	2606672	2606673	rs9263688	26151496	Chen PL	2015-07-07	Nat Commun	Genetic determinants of antithyroid drug-induced agranulocytosis by human leukocyte antigen genotyping and genome-wide association study.	Thionamide-induced agranulocytosis in Graves' disease	21 East Asian ancestry cases with agranulocytosis, 662 East Asian ancestry cases without agranulocytosis	21 East Asian ancestry cases with agranulocytosis, 546 East Asian ancestry cases without agranulocytosis	6p21.33	HLA	rs9263688-G	0.053	5E-21	(trend)	8.06	[4.86-13.37] (allelic)	Affymetrix [522980]	N
604	chr6_cox_hap2	2606697	2606698	rs3094204	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PSORS1C1	rs3094204-A	NR	2E-9		0.0169554	[0.011-0.022] unit decrease	Affymetrix [319769] (imputed)	N
604	chr6_cox_hap2	2606697	2606698	rs3094204	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	PSORS1C1	rs3094204-A	NR	6E-9		0.0163675	[0.011-0.022] unit decrease	Affymetrix [319769] (imputed)	N
604	chr6_cox_hap2	2606697	2606698	rs3094204	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	PSORS1C1	rs3094204-A	NR	3E-8		0.0157756	[0.01-0.021] unit decrease	Affymetrix [321169] (imputed)	N
604	chr6_cox_hap2	2606754	2606755	rs3095307	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	PSORS1C1	rs3095307-C	NR	3E-9		0.0181221	[0.012-0.024] unit decrease	Affymetrix [323123] (imputed)	N
604	chr6_cox_hap2	2607473	2607474	rs3095304	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PSORS1C1	rs3095304-T	NR	8E-9		0.0205624	[0.014-0.028] unit decrease	Affymetrix [319769] (imputed)	N
604	chr6_cox_hap2	2607799	2607800	rs9263692	32492067	Ruffieux H	2020-06-03	PLoS Comput Biol	A fully joint Bayesian quantitative trait locus mapping of human protein abundance in plasma.	Protein quantitative trait loci	394 European ancestry individuals	548 European ancestry individuals	6p21.33	NR	rs9263692-?	NR	5E-7	(MICA)			Illumina [~ 4000000] (imputed)	N
604	chr6_cox_hap2	2608293	2608294	rs3815087	21801394	Genin E	2011-07-29	Orphanet J Rare Dis	Genome-wide association study of Stevens-Johnson Syndrome and Toxic Epidermal Necrolysis in Europe.	Drug-induced Stevens-Johnson syndrome or toxic epidermal necrolysis (SJS/TEN)	424 European ancestry cases, 1,881 European ancestry controls	NA	6p21.33	PSORS1C1	rs3815087-A	0.21	3E-7		1.53	[1.29-1.80]	Illumina [268914]	N
604	chr6_cox_hap2	2608293	2608294	rs3815087	20041166	Fellay J	2009-12-24	PLoS Genet	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	6p21.33	CDSN	rs3815087-?	NR	8E-8	(progression)			Illumina [NR]	N
604	chr6_cox_hap2	2608653	2608654	rs3094196	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	PSORS1C1	rs3094196-G	NR	9E-10		0.0228214	[0.016-0.03] unit decrease	Affymetrix [323123] (imputed)	N
604	chr6_cox_hap2	2608905	2608906	rs13209303	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6p21.33	PSORS1C2	rs13209303-?	NR	7E-6	(TAG 52:6)	0.4081859	[0.23-0.59] unit increase	Affymetrix [at least 2500000] (imputed)	N
604	chr6_cox_hap2	2609709	2609710	rs6931921	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Strep throat	52,487 European ancestry cases, 22,017 European ancestry controls	NA	6p21.33	NR	rs6931921-?	NR	5E-7		0.045	[0.027-0.063] unit decrease	Illumina [at least 560000] (imputed)	N
604	chr6_cox_hap2	2610000	2610001	rs3131004	34075027	Gonda X	2021-06-01	Transl Psychiatry	Genetic underpinnings of affective temperaments: a pilot GWAS investigation identifies a new genome-wide significant SNP for anxious temperament in ADGRB3 gene.	Hyperthymic temperament	775 European ancestry individuals	NA	6p21.33		rs3131004-G	NR	9E-7		0.04087	unit decrease	Illumina [2550710] (imputed)	N
604	chr6_cox_hap2	2610519	2610520	rs9263715	32771030	Tangtanatakul P	2020-08-08	Arthritis Res Ther	Meta-analysis of genome-wide association study identifies FBN2 as a novel locus associated with systemic lupus erythematosus in Thai population.	Systemic lupus erythematosus	487 Thai cases, 1,606 Thai controls	405 Thai cases, 1,590 Thai controls	6p21.33	PSORS1C1	rs9263715-A	0.32	2E-9		1.4329	[NR]	Illumina [421909] (imputed)	N
604	chr6_cox_hap2	2611743	2611744	rs74375290	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Epithelial ovarian cancer	1,112 White British ancestry cases, 147,944 White British ancestry controls	NA	6p21.33		rs74375290-?	NR	6E-6		2.32386	[1.96-2.69]	NR [666300]	N
604	chr6_cox_hap2	2612019	2612020	rs3130559	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PSORS1C1	rs3130559-T	NR	2E-8		0.0192616	[0.013-0.026] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_cox_hap2	2612019	2612020	rs3130559	23144326	Kim DK	2012-11-09	Am J Respir Crit Care Med	Genome-wide association analysis of blood biomarkers in chronic obstructive pulmonary disease.	Chronic obstructive pulmonary disease-related biomarkers	Up to 1,951 European ancestry smokers	NA	6p21.33	PSORS1C1	rs3130559-T	0.2	8E-9	(SP-D)			Illumina [588352]	N
604	chr6_cox_hap2	2612532	2612533	rs6906565	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	6p21.33	NR	rs6906565-T	0.0994448200117359	2E-12		0.01719559	[0.012-0.022] unit increase	NR [NR]	N
604	chr6_cox_hap2	2612532	2612533	rs6906565	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	6p21.33	NR	rs6906565-T	0.0994448200117359	2E-12		0.011002761	[0.0079-0.0141] unit increase	NR [NR]	N
604	chr6_cox_hap2	2612852	2612853	rs3131006	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mononucleosis	17,457 European ancestry cases, 68,446 European ancestry controls	NA	6p21.33	NR	rs3131006-?	NR	3E-6		0.0727	[0.042-0.103] unit decrease	Illumina [at least 560000] (imputed)	N
604	chr6_cox_hap2	2613451	2613452	rs3132541	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental longevity (mother's age at death)	52,776 middle-aged British individuals	NA	6p21.33	NR	rs3132541-?	NR	5E-6		0.032324	[0.018-0.046] unit increase	Affymetrix [9658292] (imputed)	N
604	chr6_cox_hap2	2613956	2613957	rs143933372	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Creatinine levels	142,097 Japanese ancestry individuals	NA	6p21.33	PSORS1C1	rs143933372-?	NR	2E-8		0.03607	[0.024-0.049] unit decrease novel	Illumina [6108953] (imputed)	N
604	chr6_cox_hap2	2614296	2614297	rs4959053	23001997	Hou S	2012-12-06	Arthritis Rheum	Identification of a susceptibility locus in STAT4 for Behcet's disease in Han Chinese in a genome-wide association study.	Behcet's disease	147 Han Chinese ancestry cases, 951 Han Chinese ancestry controls	554 Han Chinese ancestry cases, 1,159 Han Chinese ancestry controls	6p21.33	PSORS1C1	rs4959053-?	.11	2E-20		4.38	[3.20-5.99]	Affymetrix [661736]	N
604	chr6_cox_hap2	2615663	2615664	rs3823418	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals, at least 88,461 European ancestry individuals	NA	6p21.33	PSORS1C1	rs3823418-A	0.1032	2E-7	(Japanese)	0.0338	[0.021-0.047] unit decrease	Illumina [1986983] (imputed)	N
604	chr6_cox_hap2	2615663	2615664	rs3823418	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	6p21.33	PSORS1C1	rs3823418-A	0.15	2E-7		0.026	[0.0084-0.0436] unit increase	Affymetrix, Illumina [2704730] (imputed)	N
604	chr6_cox_hap2	2616147	2616148	rs3132569	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PSORS1C1	rs3132569-A	NR	2E-10		0.022581	[0.016-0.03] unit decrease	Affymetrix [321016] (imputed)	N
604	chr6_cox_hap2	2616304	2616305	rs4294047	33841421	Li J	2021-03-25	Front Immunol	Variants at the MHC Region Associate With Susceptibility to <i>Clostridioides difficile</i> Infection: A Genome-Wide Association Study Using Comprehensive Electronic Health Records.	Clostridioides difficle infection in antibiotics-users	587 European ancestry cases, 3,166 European ancestry controls	NA	6p21.33	PSORS1C2	rs4294047-A	0.103	8E-6		1.53	[1.28-1.8]	Illumina [64973696] (imputed)	N
604	chr6_cox_hap2	2616395	2616396	rs3130564	25827949	Kunz M	2015-05-04	Exp Dermatol	Genome-wide association study identifies new susceptibility loci for cutaneous lupus erythematosus.	Cutaneous lupus erythematosus	151 European ancestry cases, 1,288 European ancestry controls	219 European ancestry cases, 262 European ancestry controls	6p21.33	PSORS1C1	rs3130564-T	0.163	4E-10		2.05	[1.56-2.70]	Affymetrix [906600]	N
604	chr6_cox_hap2	2616395	2616396	rs3130564	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.33	PSORS1C1	rs3130564-T	0.1934	1E-42		2.62	[NR]	Illumina [242824]	N
604	chr6_cox_hap2	2616994	2616995	rs75881311	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.33	NR	rs75881311-A	0.082	3E-13	(conditional)	1.279	[1.21-1.35]	Illumina [11270530] (imputed)	N
604	chr6_cox_hap2	2617026	2617027	rs61444472	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	683 Turkish ancestry cases, 1,721 Turkish ancestry controls	NA	6p21.33	PSORSIC1	rs61444472-?	NR	2E-17	(conditional on rs2844678 and rs9262437)			Illumina [4495750] (imputed)	N
604	chr6_cox_hap2	2617685	2617686	rs3132565	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	6p21.33	NR	rs3132565-A	NR	1E-9		1.07	[NR]	Illumina [7158791] (imputed)	N
604	chr6_cox_hap2	2617916	2617917	rs3094669	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	6p21.33	NR	rs3094669-G	0.135689518720733	6E-9		0.015982522	[0.011-0.021] unit decrease	NR [NR]	N
604	chr6_cox_hap2	2618310	2618311	rs13198298	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	6p21.33	NR	rs13198298-T	0.101343027086662	2E-12		0.010678657	[0.0077-0.0137] unit increase	NR [NR]	N
604	chr6_cox_hap2	2618310	2618311	rs13198298	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	6p21.33	NR	rs13198298-T	0.101343027086662	3E-12		0.01306148	[0.0094-0.0167] unit increase	NR [NR]	N
604	chr6_cox_hap2	2618310	2618311	rs13198298	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	6p21.33	NR	rs13198298-T	0.101343027086662	6E-12		0.013910175	[0.0099-0.0179] unit increase	NR [NR]	N
604	chr6_cox_hap2	2618782	2618783	rs1265101	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PSORS1C1	rs1265101-A	NR	5E-12		0.058179	[0.042-0.075] unit decrease	Affymetrix [321016] (imputed)	N
604	chr6_cox_hap2	2619314	2619315	rs28732100	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Subjective well-being (MTAG)	388,538 European ancestry individuals	NA	6p21.33	NR	rs28732100-C	0.9494	2E-8		0.0245	[0.016-0.033] unit increase	Illumina [NR] (imputed)	N
604	chr6_cox_hap2	2619314	2619315	rs28732100	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Neuroticism (MTAG)	168,105 European ancestry individuals	NA	6p21.33	NR	rs28732100-C	0.9458	2E-8		0.037	[0.024-0.05] unit decrease	Illumina [NR] (imputed)	N
604	chr6_cox_hap2	2619314	2619315	rs28732100	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms (MTAG)	354,862 European ancestry individuals	NA	6p21.33	NR	rs28732100-C	0.9481	2E-9		0.0293	[0.02-0.039] unit decrease	Illumina [NR] (imputed)	N
604	chr6_cox_hap2	2619576	2619577	rs3094665	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	PSORS1C1	rs3094665-C	NR	1E-8		0.020395	[0.013-0.027] unit decrease	Affymetrix [323123] (imputed)	N
604	chr6_cox_hap2	2619986	2619987	rs3132559	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PSORS1C1	rs3132559-G	NR	2E-8		0.0159183	[0.01-0.021] unit decrease	Affymetrix [321016] (imputed)	N
604	chr6_cox_hap2	2619986	2619987	rs3132559	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	PSORS1C1	rs3132559-G	NR	2E-9		0.0185127	[0.012-0.025] unit decrease	Affymetrix [323123] (imputed)	N
604	chr6_cox_hap2	2620031	2620032	rs1265100	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6p21.33		rs1265100-?	NR	8E-13		0.894617	[0.86-0.93]	NR [685523]	N
604	chr6_cox_hap2	2620134	2620135	rs1265099	30626913	Amare AT	2019-01-09	Mol Psychiatry	Bivariate genome-wide association analyses of the broad depression phenotype combined with major depressive disorder, bipolar disorder or schizophrenia reveal eight novel genetic loci for depression.	Broad depression or schizophrenia	9,240 European ancestry broad depression cases, 9,519 European ancestry broad depression controls, 51,258 European ancestry individuals, 36,989 European and East Asian ancestry schizophrenia cases, 113,075 European and East Asian ancestry schizophrenia controls	322,580 individuals	6p21.33	PSORS1C2	rs1265099-A	0.41	2E-10				Affymetrix, Illumina [at least 918921] (imputed)	N
604	chr6_cox_hap2	2620354	2620355	rs2074478	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.33		rs2074478-T	0.809793	4E-16		1.0453895	[1.03-1.05]	Affymetrix, Illumina [9851866] (imputed)	N
604	chr6_cox_hap2	2620989	2620990	rs3130573	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	PSORS1C1, PSORS1C2	rs3130573-G	NR	1E-9		0.0200379	[0.014-0.026] unit decrease	Affymetrix [323858] (imputed)	N
604	chr6_cox_hap2	2620989	2620990	rs3130573	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	PSORS1C1, PSORS1C2	rs3130573-G	NR	3E-9		0.0196118	[0.013-0.026] unit decrease	Affymetrix [127266] (imputed)	N
604	chr6_cox_hap2	2620989	2620990	rs3130573	21750679	Allanore Y	2011-07-07	PLoS Genet	Genome-wide scan identifies TNIP1, PSORS1C1, and RHOB as novel risk loci for systemic sclerosis.	Systemic sclerosis	564 European ancestry cases, 1,776 European ancestry controls	1,682 European ancestry cases, 3,926 European ancestry controls	6p21.33	PSORS1C1	rs3130573-G	0.32	6E-10		1.25	[1.17-1.35]	Illumina [489814]	N
604	chr6_cox_hap2	2621180	2621181	rs1265097	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PSORS1C1, PSORS1C2	rs1265097-A	NR	3E-9		0.0309409	[0.021-0.041] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_cox_hap2	2621180	2621181	rs1265097	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	PSORS1C1, PSORS1C2	rs1265097-A	NR	4E-8		0.0285098	[0.018-0.039] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_cox_hap2	2621180	2621181	rs1265097	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PSORS1C1, PSORS1C2	rs1265097-A	NR	3E-15		0.0410297	[0.031-0.051] unit decrease	Affymetrix [321016] (imputed)	N
604	chr6_cox_hap2	2621180	2621181	rs1265097	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	PSORS1C1, PSORS1C2	rs1265097-A	NR	7E-10		0.0349645	[0.024-0.046] unit decrease	Affymetrix [323123] (imputed)	N
604	chr6_cox_hap2	2621180	2621181	rs1265097	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	6p21.33	PSORS1C1	rs1265097-C	0.917203	7E-18		0.0323248	[0.025-0.04] unit decrease	Affymetrix [NR] (imputed)	N
604	chr6_cox_hap2	2621180	2621181	rs1265097	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	6p21.33	NR	rs1265097-?	NR	8E-7		0.04125219	[0.025-0.058] unit decrease	Illumina [34656550] (imputed)	N
604	chr6_cox_hap2	2621180	2621181	rs1265097	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.33	PSORS1C2, PSORS1C1	rs1265097-A	0.1234	1E-10		0.072	[0.05-0.094] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
604	chr6_cox_hap2	2621180	2621181	rs1265097	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	6p21.33	PSORS1C1, PSORS1C2	rs1265097-A	0.115	2E-32		0.059	[0.049-0.069] unit decrease	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
604	chr6_cox_hap2	2621210	2621211	rs1265096	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	6p21.33	NR	rs1265096-?		7E-9	(SFTPD)	0.3365	[NR] unit increase	Illumina [NR]	N
604	chr6_cox_hap2	2621327	2621328	rs16898823	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals	at least 101,293 European ancestry individuals	6p21.33	PSORS1C1, PSORS1C2	rs16898823-A	0.9	3E-8	(Japanese)	0.037	[0.023-0.051] unit increase	Illumina [5864938] (imputed)	N
605	chr6_cox_hap2	2621908	2621909	rs1265093	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PSORS1C1	rs1265093-A	NR	2E-11		0.0205689	[0.015-0.027] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_cox_hap2	2621908	2621909	rs1265093	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	PSORS1C1	rs1265093-A	NR	1E-10		0.0198483	[0.014-0.026] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_cox_hap2	2621908	2621909	rs1265093	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	PSORS1C1	rs1265093-A	NR	2E-11		0.0223747	[0.016-0.029] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_cox_hap2	2621908	2621909	rs1265093	23144326	Kim DK	2012-11-09	Am J Respir Crit Care Med	Genome-wide association analysis of blood biomarkers in chronic obstructive pulmonary disease.	Chronic obstructive pulmonary disease-related biomarkers	Up to 1,951 European ancestry smokers	NA	6p21.33	PSORS1C1, CCHCR1	rs1265093-A	0.26	6E-9	(SP-D)			Illumina [588352]	N
605	chr6_cox_hap2	2621979	2621980	rs2285803	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PSORS1C1	rs2285803-T	NR	3E-8		0.0173578	[0.011-0.023] unit decrease	Affymetrix [319769] (imputed)	N
605	chr6_cox_hap2	2621979	2621980	rs2285803	33875642	Duran-Lozano L	2021-04-19	Blood Cancer J	Germline variants at SOHLH2 influence multiple myeloma risk.	Multiple myeloma	4,376 European ancestry cases, 345,887 European ancestry controls	5,598 European ancestry cases, 15,261 European ancestry controls	6p21.33	PSORS1C2	rs2285803-T	0.26	1E-11		1.17	[NR]	Illumina [33000000] (imputed)	N
605	chr6_cox_hap2	2621979	2621980	rs2285803	23955597	Chubb D	2013-08-18	Nat Genet	Common variation at 3q26.2, 6p21.33, 17p11.2 and 22q13.1 influences multiple myeloma risk.	Multiple myeloma	2,335 European ancestry cases, 7,306 European ancestry controls	2,357 European ancestry cases, 3,684 European ancestry controls	6p21.33	PSORS1C1, CCHCR1, TCF19, POU5F1, CDSN	rs2285803-A	0.32	1E-10		1.192	[1.13-1.26]	Illumina [414804]	N
605	chr6_cox_hap2	2622850	2622851	rs1265091	32769997	Zhou W	2020-08-07	Nat Commun	GWAS of thyroid stimulating hormone highlights pleiotropic effects and inverse association with thyroid cancer.	Thyroid stimulating hormone levels	119,715 European ancestry individuals	NA	6p21.33	PSORS1C1	rs1265091-T	0.187386210350798	5E-15		0.0553	[0.041-0.069] SD increase	Illumina [22400000] (imputed)	N
605	chr6_cox_hap2	2622850	2622851	rs1265091	30367059	Teumer A	2018-10-26	Nat Commun	Genome-wide analyses identify a role for SLC17A4 and AADAT in thyroid hormone regulation.	Thyroid stimulating hormone levels	54,288 European ancestry individuals	up to 22,383 European ancestry individuals	6p21.33	PSORS1C1	rs1265091-T	0.2	5E-15		0.058	[0.044-0.072] unit increase	Affymetrix, Illumina [8048941] (imputed)	N
605	chr6_cox_hap2	2624258	2624259	rs9263737	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Lymphocyte counts	62,076 Japanese ancestry individuals	NA	6p21.33	NR	rs9263737-?	NR	4E-8		0.03399	[0.022-0.046] unit decrease novel	Illumina [6108953] (imputed)	N
605	chr6_cox_hap2	2624595	2624596	rs1265086	33143745	Andlauer TFM	2020-11-04	BMC Med	Treatment- and population-specific genetic risk factors for anti-drug antibodies against interferon-beta: a GWAS.	Binding antibody response to interferon beta therapy in multiple sclerosis (antibody levels; all treatment preparations)	up to 2,000 German and Swedish ancestry individuals	up to 757 German and Swedish ancestry individuals	6p21.33		rs1265086-T	0.38	5E-9	(conditional on rs9272071 + rs28746882)	0.15234222	[-0.1--0.2] unit decrease	Illumina [8550834] (imputed)	N
605	chr6_cox_hap2	2626115	2626116	rs9263739	19915573	Asano K	2009-11-15	Nat Genet	A genome-wide association study identifies three new susceptibility loci for ulcerative colitis in the Japanese population.	Ulcerative colitis	376 Japanese ancestry cases, 934 Japanese ancestry controls	376 Japanese ancestry cases, 1,097 Japanese ancestry controls	6p21.33	HLA	rs9263739-T	0.15	4E-67		2.73	[2.43-3.07]	Illumina [513923]	N
605	chr6_cox_hap2	2626434	2626435	rs1265081	32276964	Shete S	2020-04-10	Cancer Res	A genome-wide association study identifies two novel susceptible regions for squamous cell carcinoma of the head and neck.	Head and neck squamous cell carcinoma	2,171 European ancestry cases, 4,493 European ancestry controls	5,205 European ancestry cases, 3,232 European ancestry controls	6p21.33	CCHCR1	rs1265081-A	0.52	4E-10		1.1764705	[1.11-1.23]	Illumina [7858089] (imputed)	N
605	chr6_cox_hap2	2626834	2626835	rs1265080	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Non-Hodgkin's lymphoma	2,400 European ancestry cases, 410,350 European ancestry controls	NA	6p21.33		rs1265080-A	NR	2E-8		1.1785504	NR	Affymetrix [7846216] (imputed)	N
605	chr6_cox_hap2	2627872	2627873	rs1265075	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6p21.33	CCHCR1	rs1265075-A	0.076201	5E-17		0.037481945	[0.029-0.046] unit increase	Affymetrix [93095623] (imputed)	N
605	chr6_cox_hap2	2627872	2627873	rs1265075	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	6p21.33	CCHCR1	rs1265075-A	0.076277	4E-25		0.04465471	[0.036-0.053] unit decrease	Affymetrix [93095623] (imputed)	N
605	chr6_cox_hap2	2627872	2627873	rs1265075	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6p21.33	CCHCR1	rs1265075-A	0.076136	8E-24		0.044859033	[0.036-0.054] unit decrease	Affymetrix [93095623] (imputed)	N
605	chr6_cox_hap2	2627872	2627873	rs1265075	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	6p21.33	CCHCR1	rs1265075-A	0.07622	8E-10		0.026229646	[0.018-0.035] unit increase	Affymetrix [93095623] (imputed)	N
605	chr6_cox_hap2	2628035	2628036	rs886401	33143745	Andlauer TFM	2020-11-04	BMC Med	Treatment- and population-specific genetic risk factors for anti-drug antibodies against interferon-beta: a GWAS.	Binding antibody response to interferon beta therapy in multiple sclerosis (antibody levels; IFN?-1a subcutaneous and intramuscular)	up to 2,000 German and Swedish ancestry individuals	up to 757 German and Swedish ancestry individuals	6p21.33		rs886401-A	NR	4E-12		0.24661802	[0.18-0.32] unit increase	Illumina [8550834] (imputed)	N
605	chr6_cox_hap2	2629659	2629660	rs2240060	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals, 6,795 African American individuals, 6,324 East Asian ancestry individuals, 2,335 South Asian ancestry individuals, 1,442 Hispanic individuals	NA	6p21.33	CCHCR1	rs2240060-A	NR	3E-10		0.0137	[0.0094-0.018] unit increase	Affymetrix, Illumina [8034757] (imputed)	N
605	chr6_cox_hap2	2629659	2629660	rs2240060	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals	NA	6p21.33	CCHCR1	rs2240060-A	0.2881	6E-10		0.0136336	[0.0093-0.018] unit increase	Affymetrix, Illumina [8603712] (imputed)	N
605	chr6_cox_hap2	2629659	2629660	rs2240060	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Microalbuminuria	51,861 European, African American, East Asian, South Asian or Hispanic ancestry cases, 297,093 European, African American, East Asian, South Asian or Hispanic ancestry controls	NA	6p21.33	CCHCR1	rs2240060-A	NR	4E-7		1.0380044	[1.02-1.05]	Affymetrix, Illumina [8326000] (imputed)	N
605	chr6_cox_hap2	2630956	2630957	rs130071	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.33		rs130071-A	NR	3E-11		1.1198208	[1.08-1.16]	Affymetrix [7846216] (imputed)	N
605	chr6_cox_hap2	2630956	2630957	rs130071	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6p21.33	NR	rs130071-G	0.7038	3E-16		1.0548522	[1.04-1.07]	Affymetrix [15688218] (imputed)	N
605	chr6_cox_hap2	2631272	2631273	rs3132535	27363682	Mitchell JS	2016-07-01	Nat Commun	Genome-wide association study identifies multiple susceptibility loci for multiple myeloma.	Multiple myeloma	7,319 European ancestry cases, 234,385 European ancestry controls	2,547 European ancestry cases, 4,803 European ancestry controls	6p21.33	NR	rs3132535-A		3E-17		1.2	[1.15-1.25]	Illumina [at least 7182761] (imputed)	N
605	chr6_cox_hap2	2631373	2631374	rs3131014	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	CCHCR1	rs3131014-A	NR	1E-8		0.0188268	[0.012-0.025] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_cox_hap2	2631373	2631374	rs3131014	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	CCHCR1	rs3131014-A	NR	2E-11		0.0223184	[0.016-0.029] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_cox_hap2	2631373	2631374	rs3131014	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	CCHCR1	rs3131014-A	NR	7E-15		0.0280938	[0.021-0.035] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_cox_hap2	2631485	2631486	rs9263761	33239696	Steinthorsdottir V	2020-11-25	Nat Commun	Genetic predisposition to hypertension is associated with preeclampsia in European and Central Asian women.	Preeclampsia (maternal genotype effect)	2,296 Central Asian ancestry cases, 2,059 Central Asian ancestry controls, 7,219 European ancestry cases, 155,660 European ancestry controls	592 Kazakh ancestry cases, 361 Kazakh ancestry controls, 2,043 European ancestry cases, 6,018 European ancestry controls	6p21.33		rs9263761-G	0.76	2E-6		1.11	[1.06-1.16]	Illumina [11796347] (imputed)	N
605	chr6_cox_hap2	2631820	2631821	rs1265115	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	CCHCR1	rs1265115-A	NR	6E-9		0.0193434	[0.013-0.026] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_cox_hap2	2632764	2632765	rs1265112	21810746	Chantarangsu S	2011-08-01	Clin Infect Dis	Genome-wide association study identifies variations in 6p21.3 associated with nevirapine-induced rash.	Nevirapine-induced rash	72 Thai ancestry nevirapine-induced rash HIV cases, 77 Thai ancestry nevirapine-tolerant rash HIV cases	88 Thai ancestry nevirapine-induced rash HIV cases, 145 Thai ancestry nevirapine-tolerant HIV cases		CCHCR1	rs1265112-G	0.06	1E-8		4.36	[2.58-7.36]	Illumina [499730]	N
605	chr6_cox_hap2	2633256	2633257	rs130067	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	6p21.33	NR	rs130067-G	0.2	2E-7		1.05	[1.03-1.07]	Illumina [20370935] (imputed)	N
605	chr6_cox_hap2	2633256	2633257	rs130067	21743467	Kote-Jarai Z	2011-07-10	Nat Genet	Seven prostate cancer susceptibility loci identified by a multi-stage genome-wide association study.	Prostate cancer	6,621 European ancestry cases, 6,939 European ancestry controls	22,957 European ancestry cases, 23,234 European ancestry controls, 420 East Asian ancestry cases, 433 East Asian ancestry controls, 112 African American cases, 298 African American controls, 7,140 cases, 5,455 controls	6p21.33	CCHCR1	rs130067-G	0.21	3E-8		1.05	[1.02-1.09]	NR [2600000] (imputed)	N
605	chr6_cox_hap2	2634614	2634615	rs1265108	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	CCHCR1	rs1265108-T	NR	1E-8		0.0172707	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_cox_hap2	2634614	2634615	rs1265108	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	CCHCR1	rs1265108-T	NR	1E-12		0.0213867	[0.015-0.027] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_cox_hap2	2634614	2634615	rs1265108	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	CCHCR1	rs1265108-T	NR	8E-15		0.0255848	[0.019-0.032] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_cox_hap2	2636168	2636169	rs143334143	33307546	Pairo-Castineira E	2020-12-11	Nature	Genetic mechanisms of critical illness in Covid-19.	COVID-19 (critical illness vs population)	2,804 European ancestry cases, 2,415 European, South Asian and Hispanic or Latin American ancestry cases, 687,911 European ancestry controls, 477,741 European, South Asian and Hispanic or Latin American ancestry controls	NA	6p21.33		rs143334143-A	NR	2E-10		1.3	[1.27-1.48]	Illumina [NR] (imputed)	N
605	chr6_cox_hap2	2637240	2637241	rs130065	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8 on CD28+ CD45RA+ CD8+ T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs130065-A	0.16421	1E-14		0.3127	[0.23-0.39] unit decrease	Illumina [17954496] (imputed)	N
605	chr6_cox_hap2	2643085	2643086	rs9263789	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	TCF19	rs9263789-A	NR	3E-9		0.0228494	[0.015-0.03] unit increase	Affymetrix [321169] (imputed)	N
605	chr6_cox_hap2	2643308	2643309	rs3130934	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	6p21.33		rs3130934-A	0.315939	3E-10		0.028368	[0.02-0.037] unit increase	NR [11722792] (imputed)	N
605	chr6_cox_hap2	2643308	2643309	rs3130934	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	6p21.33		rs3130934-A	0.315939	3E-9		0.0263765	[0.018-0.035] unit increase	NR [11722792] (imputed)	N
605	chr6_cox_hap2	2644061	2644062	rs7750641	33909500	Moll M	2021-04-28	Am J Physiol Lung Cell Mol Physiol	A Systematic Analysis of Protein-altering Exonic Variants in Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease	up to 31,465 European ancestry cases, up to 203,688 European ancestry controls, up to 1,413 African ancestry cases, up to 6,080 African ancestry controls, up to 287 East Asian ancestry cases, up to 7,484 East Asian ancestry controls, up to 61 Hispanic cases, up to 613 Hispanic controls	NA	6p21.33	TCF19	rs7750641-T	0.15	1E-12		1.11	[1.08 -1.14]	Illumina [at least 109036]	N
605	chr6_cox_hap2	2644061	2644062	rs7750641	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.33	TCF19	rs7750641-T	0.1263	3E-58		3.35	[NR]	Illumina [242824]	N
605	chr6_cox_hap2	2644367	2644368	rs2073721	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes (adjusted for BMI)	up to 48,286 European ancestry cases, up to 250,671 European ancestry controls	NA	6p21.33	MHC	rs2073721-G	0.742	6E-10		1.04	[1.03-1.06]	Affymetrix, Illumina [247470]	N
605	chr6_cox_hap2	2644367	2644368	rs2073721	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes (adjusted for BMI)	48,286 European ancestry cases, 250,671 European ancestry controls, 33,126 African American, East Asian, Hispanic/Latino or South Asian cases, 120,161 African American, East Asian, Hispanic/Latino or South Asian controls	NA	6p21.33	MHC	rs2073721-G	0.749	2E-9		1.04	[1.02-1.05]	Affymetrix, Illumina [247470]	N
605	chr6_cox_hap2	2644367	2644368	rs2073721	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes	up to 48,286 European ancestry cases, up to 250,671 European ancestry controls	NA	6p21.33	MHC	rs2073721-G	0.742	6E-9		1.04	[1.02-1.06]	Affymetrix, Illumina [247470]	N
605	chr6_cox_hap2	2644367	2644368	rs2073721	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes	48,286 European ancestry cases, 250,671 European ancestry controls, 33,126 African American, East Asian, Hispanic/Latino or South Asian cases, 120,161 African American, East Asian, Hispanic/Latino or South Asian controls	NA	6p21.33	MHC	rs2073721-G	0.749	2E-10		1.04	[1.02-1.05]	Affymetrix, Illumina [247470]	N
605	chr6_cox_hap2	2645344	2645345	rs1419881	25802187	Jiang DK	2015-04-28	Hepatology	Genetic variants in five novel loci including CFB and CD40 predispose to chronic hepatitis B.	Chronic hepatitis B infection	2,514 Chinese ancestry cases, 1,130 Chinese ancestry controls	6,600 Chinese ancestry cases, 8,127 Chinese ancestry controls	6p21.33	TCF19	rs1419881-G	0.55	3E-7		1.12	[1.08-1.18]	Illumina [3680900] (imputed)	N
605	chr6_cox_hap2	2645344	2645345	rs1419881	23760081	Kim YJ	2013-06-10	Hum Mol Genet	A genome-wide association study identified new variants associated with the risk of chronic hepatitis B.	Chronic hepatitis B infection	400 Korean ancestry cases, 1,000 Korean ancestry controls	971 Korean ancestry cases, 1,938 Korean ancestry controls	6p21.33	TCF19	rs1419881-?	NR	1E-18		1.37	[1.23-1.52]	Illumina [719265]	N
605	chr6_cox_hap2	2646196	2646197	rs182661945	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	6p21.33	NR	rs182661945-?	NR	2E-9		5.977	NR z score increase	Illumina [at least 830937] (imputed)	N
605	chr6_cox_hap2	2646837	2646838	rs3130933	33649182	Penova M	2021-03-01	Proc Natl Acad Sci U S A	Genome wide association study of HTLV-1-associated myelopathy/tropical spastic paraparesis in the Japanese population.	HTLV-1 associated myelopathy	731 Japanese ancestry cases, 846 Japanese ancestry controls	NA	6p21.33		rs3130933-T	0.04	5E-9		2.44	[1.81-3.29]	Illumina [126394]	N
605	chr6_cox_hap2	2649655	2649656	rs3130931	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	6p21.33	NR	rs3130931-C	0.6765	2E-32		0.0482	[0.04-0.056] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
605	chr6_cox_hap2	2649655	2649656	rs3130931	21801394	Genin E	2011-07-29	Orphanet J Rare Dis	Genome-wide association study of Stevens-Johnson Syndrome and Toxic Epidermal Necrolysis in Europe.	Drug-induced Stevens-Johnson syndrome or toxic epidermal necrolysis (SJS/TEN)	424 European ancestry cases, 1,881 European ancestry controls	NA	6p21.33	POU5F1	rs3130931-C	0.69	8E-7		1.54	[1.29-1.84]	Illumina [268914]	N
605	chr6_cox_hap2	2650757	2650758	rs185402687	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	6p21.33	POU5F1	rs185402687-C	0.0157	6E-14		0.1102721	[0.081-0.139] unit decrease	Affymetrix [~ 2500000] (imputed)	N
605	chr6_cox_hap2	2651219	2651220	rs3130501	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	6p21.33	POU5F1	rs3130501-G	0.7833	6E-9	(EA)	0.0693	[0.046-0.093] unit increase	Affymetrix, Illumina [NR] (imputed)	N
605	chr6_cox_hap2	2651219	2651220	rs3130501	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	6p21.33	POU5F1	rs3130501-G	0.7833	4E-12		0.063	[0.045-0.081] unit increase	Affymetrix, Illumina [NR] (imputed)	N
605	chr6_cox_hap2	2651219	2651220	rs3130501	21801394	Genin E	2011-07-29	Orphanet J Rare Dis	Genome-wide association study of Stevens-Johnson Syndrome and Toxic Epidermal Necrolysis in Europe.	Drug-induced Stevens-Johnson syndrome or toxic epidermal necrolysis (SJS/TEN)	424 European ancestry cases, 1,881 European ancestry controls	NA	6p21.33	POU5F1	rs3130501-G	0.74	2E-8		1.74	[1.43-2.13]	Illumina [268914]	N
605	chr6_cox_hap2	2651480	2651481	rs3132524	24509480	Mahajan A	2014-02-09	Nat Genet	Genome-wide trans-ancestry meta-analysis provides insight into the genetic architecture of type 2 diabetes susceptibility.	Type 2 diabetes	12,171 European ancestry cases, 56,862 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls	21,491 European ancestry cases, 55,647 European ancestry controls	6p21.33	TCF19, POU5F1	rs3132524-G		4E-9		1.07	[1.04-1.09]	Affymetrix, Illumina [2500000] (imputed)	N
605	chr6_cox_hap2	2652877	2652878	rs1062630	28654678	Mandage R	2017-06-27	PLoS One	Genetic factors affecting EBV copy number in lymphoblastoid cell lines derived from the 1000 Genome Project samples.	Epstein-Barr virus copy number in lymphoblastoid cell lines	389 East Asian ancestry individuals, 189 South Asian ancestry individuals, 492 European ancestry individuals, 467 Sub-Saharan African ancestry individuals, 59 African American individuals, 157 Hispanic/Latino individuals	NA	6p21.33	POU5F1	rs1062630-?	NR	1E-6				NR [at least 880000]	N
605	chr6_cox_hap2	2654221	2654222	rs879882	31935283	Du Z	2020-01-01	Blood Adv	A meta-analysis of genome-wide association studies of multiple myeloma among men and women of African ancestry.	Multiple myeloma	1,813 African American and African ancestry cases, 8,871 African American and African ancestry controls	NA	6p21.33	NR	rs879882-T	0.45	1E-6		1.2	[1.12-1.29]	Illumina [12683648] (imputed)	N
605	chr6_cox_hap2	2654221	2654222	rs879882	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	6p21.33	MICA	rs879882-?	NR	2E-7	(Conditioned on rs2256183)		[NR]	Affymetrix, Illumina [2834208] (imputed)	N
605	chr6_cox_hap2	2654816	2654817	rs1265159	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.33	intergenic	rs1265159-T	0.2191	4E-37		2.42	[NR]	Illumina [242824]	N
605	chr6_cox_hap2	2654921	2654922	rs885950	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	6p21.33	POU5F1, HCG27, HLA	rs885950-C	0.42	7E-13		1.08	[1.07-1.09]	Illumina [at least 560000] (imputed)	N
605	chr6_cox_hap2	2655510	2655511	rs1265158	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	POU5F1	rs1265158-G	NR	1E-8		0.0185854	[0.012-0.025] unit decrease	Affymetrix [323858] (imputed)	N
605	chr6_cox_hap2	2655510	2655511	rs1265158	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	POU5F1	rs1265158-G	NR	3E-8		0.0179118	[0.012-0.024] unit decrease	Affymetrix [127266] (imputed)	N
605	chr6_cox_hap2	2655510	2655511	rs1265158	28087736	Ludwig KU	2017-01-13	Hum Mol Genet	Imputation of orofacial clefting data identifies novel risk loci and sheds light on the genetic background of cleft lip ? cleft palate and cleft palate only.	Nonsyndromic cleft lip with or without cleft palate	399 European ancestry cases, 1,318 European ancestry controls, 666 European ancestry trios, 795 Asian trios	224 European ancestry cases, 921 European ancestry controls, 152 Mayan cases, 323 Mayan controls, 198 Middle Eastern cases, 391 Middle Eastern controls	6p21.33	NR	rs1265158-?		5E-6	(EA)			NR [8012124] (imputed)	N
605	chr6_cox_hap2	2655510	2655511	rs1265158	28087736	Ludwig KU	2017-01-13	Hum Mol Genet	Imputation of orofacial clefting data identifies novel risk loci and sheds light on the genetic background of cleft lip ? cleft palate and cleft palate only.	Nonsyndromic cleft lip with or without cleft palate	399 European ancestry cases, 1,318 European ancestry controls, 666 European ancestry trios, 795 Asian trios	224 European ancestry cases, 921 European ancestry controls, 152 Mayan cases, 323 Mayan controls, 198 Middle Eastern cases, 391 Middle Eastern controls	6p21.33	NR	rs1265158-?		3E-6	(All)			NR [8012124] (imputed)	N
605	chr6_cox_hap2	2655978	2655979	rs2269712	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.33		rs2269712-A	0.249	1E-10				Affymetrix [10369434] (imputed)	N
605	chr6_cox_hap2	2655978	2655979	rs2269712	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	POU5F1	rs2269712-A	NR	2E-8		0.0181335	[0.012-0.024] unit decrease	Affymetrix [319769] (imputed)	N
605	chr6_cox_hap2	2656251	2656252	rs116763857	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p21.33	PSORS1C3	rs116763857-G	0.027	1E-14		0.295	[0.22-0.37] unit decrease	Affymetrix, Illumina [7374092] (imputed)	N
605	chr6_cox_hap2	2657014	2657015	rs3094188	23266558	Yamazaki K	2012-12-21	Gastroenterology	A genome-wide association study identifies 2 susceptibility Loci for Crohn's disease in a Japanese population.	Crohn's disease	372 Japanese ancestry cases,3,389 Japanese ancestry controls	Up to 1,151 Japanese ancestry cases, up to 15,800 Japanese ancestry controls	6p21.33	PSORS1C3	rs3094188-C	0.280	7E-7		1.61	[1.33-1.94]	Illumina [4929034] (imputed)	N
605	chr6_cox_hap2	2657014	2657015	rs3094188	21801394	Genin E	2011-07-29	Orphanet J Rare Dis	Genome-wide association study of Stevens-Johnson Syndrome and Toxic Epidermal Necrolysis in Europe.	Drug-induced Stevens-Johnson syndrome or toxic epidermal necrolysis (SJS/TEN)	424 European ancestry cases, 1,881 European ancestry controls	NA	6p21.33	POU5F1	rs3094188-A	0.63	3E-8		1.59	[1.34-1.88]	Illumina [268914]	N
605	chr6_cox_hap2	2658280	2658281	rs887466	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation GrimAge acceleration	34,467 European ancestry individuals	NA	6p21.33	NR	rs887466-A	0.3815	5E-10		0.1928	[0.13-0.25] unit decrease	Affymetrix, Illumina [7568149] (imputed)	N
605	chr6_cox_hap2	2658351	2658352	rs3131018	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.33		rs3131018-A	0.369	3E-21				Affymetrix [10369434] (imputed)	N
605	chr6_cox_hap2	2658351	2658352	rs3131018	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p21.33		rs3131018-A	0.369	2E-16				Affymetrix [10369434] (imputed)	N
605	chr6_cox_hap2	2658351	2658352	rs3131018	21051598	Pereyra F	2010-11-04	Science	The major genetic determinants of HIV-1 control affect HLA class I peptide presentation.	HIV-1 control	516 European cases, 1,196 European controls, 341 African American cases, 892 African American controls, 117 Hispanic cases, 560 Hispanic controls	NA	6p21.33	PSORS1C3	rs3131018-C	0.625	4E-16	(EA)	2.1	[NR]	Illumina [1384048] (imputed)	N
605	chr6_cox_hap2	2659406	2659407	rs9404937	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	POU5F1, PSORS1C3	rs9404937-A	NR	7E-13		0.0235486	[0.017-0.03] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_cox_hap2	2662246	2662247	rs3130507	29227965	Pilling LC	2017-12-01	Aging (Albany NY)	Human longevity: 25 genetic loci associated in 389,166 UK biobank participants.	Parental longevity (mother's attained age)	412,937 British ancestry individuals	NA	6p21.33	PSORS1C3	rs3130507-G	0.72	2E-10		0.0155	[0.011-0.02] unit decrease	Affymetrix [11535925] (imputed)	N
605	chr6_cox_hap2	2662246	2662247	rs3130507	29227965	Pilling LC	2017-12-01	Aging (Albany NY)	Human longevity: 25 genetic loci associated in 389,166 UK biobank participants.	Parental longevity (combined parental attained age, Martingale residuals)	389,166 British ancestry individuals	NA	6p21.33	PSORS1C3	rs3130507-G	NR	4E-6			[NR]	Affymetrix [11535925] (imputed)	N
605	chr6_cox_hap2	2669042	2669043	rs7753892	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GNLY	5,366 Icelandic ancestry individuals	NA	6p21.33		rs7753892-C	0.3652	5E-15		0.154032	[0.12-0.19] unit increase	Illumina [7506463] (imputed)	N
605	chr6_cox_hap2	2669042	2669043	rs7753892	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GNLY	5,366 Icelandic ancestry individuals	NA	6p21.33		rs7753892-C	0.3652	2E-14		0.15056	[0.11-0.19] unit increase	Illumina [7506463] (imputed)	N
605	chr6_cox_hap2	2669142	2669143	rs13203101	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p21.33	NR	rs13203101-?	NR	3E-15		0.1435	[0.11-0.18] unit decrease	Illumina [at least 560000] (imputed)	N
605	chr6_cox_hap2	2669214	2669215	rs3130458	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	POU5F1	rs3130458-T	NR	6E-12		0.0238773	[0.017-0.031] unit decrease	Affymetrix [323858] (imputed)	N
605	chr6_cox_hap2	2669214	2669215	rs3130458	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	POU5F1	rs3130458-T	NR	3E-11		0.0230527	[0.016-0.03] unit decrease	Affymetrix [127266] (imputed)	N
605	chr6_cox_hap2	2669600	2669601	rs6922051	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	POU5F1	rs6922051-C	NR	7E-12		0.0225553	[0.016-0.029] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_cox_hap2	2670565	2670566	rs1265181	30921485	Bejaoui Y	2019-03-28	Exp Dermatol	Genome-wide association study of psoriasis in an Egyptian population.	Psoriasis	215 Egyptian ancestry cases, 416 Egyptian ancestry controls	321 Egyptian ancestry cases, 253 Egyptian ancestry controls	6p21.33	HCG27	rs1265181-?	NR	1E-10		2.0	[1.62-2.45]	Illumina [312245]	N
605	chr6_cox_hap2	2670565	2670566	rs1265181	19169255	Zhang XJ	2009-01-25	Nat Genet	Psoriasis genome-wide association study identifies susceptibility variants within LCE gene cluster at 1q21.	Psoriasis	1,139 Han Chinese ancestry cases, 1,132 Han Chinese ancestry controls	5,721 Chinese ancestry cases, 7,340 Chinese ancestry controls	6p21.33	MHC	rs1265181-?	NR	2E-208		22.62		Illumina [494902]	N
605	chr6_cox_hap2	2670821	2670822	rs9368661	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	6p21.33	NR	rs9368661-T	0.258577	1E-19		0.02376896	[0.019-0.029] unit increase	Affymetrix [93095623] (imputed)	N
605	chr6_cox_hap2	2670968	2670969	rs9263850	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG299F13.17	rs9263850-G	NR	1E-9		0.0190638	[0.013-0.025] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_cox_hap2	2670968	2670969	rs9263850	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG299F13.17	rs9263850-G	NR	5E-16		0.0275644	[0.021-0.034] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_cox_hap2	2672964	2672965	rs9295958	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG299F13.17	rs9295958-A	NR	1E-10		0.0250366	[0.017-0.033] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_cox_hap2	2673341	2673341	rs145171179	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	6p21.33	XXbac-BPG299F13.17	rs145171179-GA	0.212169	4E-9		0.020656763	[0.014-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
605	chr6_cox_hap2	2673413	2673414	rs9263861	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	6p21.33	HLA region	rs9263861-?	NR	3E-8	(EA)			Affymetrix, Illumina [10537485] (imputed)	N
605	chr6_cox_hap2	2673413	2673414	rs9263861	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	6p21.33	HLA region	rs9263861-?	NR	3E-8				Affymetrix, Illumina [10537485] (imputed)	N
605	chr6_cox_hap2	2673612	2673613	rs7741829	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	6p21.33	XXbac-BPG299F13.17	rs7741829-C	0.289979	2E-13		0.019235091	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
605	chr6_cox_hap2	2673800	2673801	rs7742179	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG299F13.17	rs7742179-A	NR	3E-13		0.0215095	[0.016-0.027] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_cox_hap2	2673800	2673801	rs7742179	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG299F13.17	rs7742179-A	NR	9E-21		0.0299448	[0.024-0.036] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_cox_hap2	2674592	2674594	rs550239034	31577861	Dai J	2019-10-31	Int J Cancer	Genome-wide association study of INDELs identified four novel susceptibility loci associated with lung cancer risk.	Lung cancer	20,871 European ancestry cases, 15,971 European ancestry controls, 2,331 Chinese ancestry cases, 3,077 Chinese ancestry controls	NA	6p21.33	POU5F1	rs550239034-D	0.25	2E-7		0.92	[0.89-0.95]	Illumina [484196]	N
605	chr6_cox_hap2	2678746	2678747	rs28749551	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	6p21.33	XXbac-BPG299F13.17	rs28749551-C	0.189749	9E-23		0.029464645	[0.024-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
605	chr6_cox_hap2	2678746	2678747	rs28749551	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	6p21.33	XXbac-BPG299F13.17	rs28749551-C	0.1902	8E-18		0.03930922	[0.03-0.048] unit decrease	Affymetrix [~ 2500000] (imputed)	N
605	chr6_cox_hap2	2679553	2679554	rs28362333	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	6p21.33		rs28362333-C	0.530396419	7E-20		0.08448383	[0.066-0.103] unit increase	Illumina [13429769] (imputed)	N
605	chr6_cox_hap2	2680608	2680609	rs28362345	31935283	Du Z	2020-01-01	Blood Adv	A meta-analysis of genome-wide association studies of multiple myeloma among men and women of African ancestry.	Multiple myeloma	1,813 African American and African ancestry cases, 8,871 African American and African ancestry controls	NA	6p21.33	NR	rs28362345-T	0.7	6E-7		1.24	[1.14-1.34]	Illumina [12683648] (imputed)	N
605	chr6_cox_hap2	2682801	2682802	rs6903896	20585627	Eriksson N	2010-06-24	PLoS Genet	Web-based, participant-driven studies yield novel genetic associations for common traits.	Common traits (Other)	9,126 European ancestry individuals	NA	6p21.33	NR	rs6903896-?	NR	6E-7	(sneeze)			Illumina [535076]	N
605	chr6_cox_hap2	2683169	2683170	rs9263868	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p21.33	NR	rs9263868-?	NR	4E-21		0.1525	[0.12-0.18] unit increase	Illumina [at least 560000] (imputed)	N
605	chr6_cox_hap2	2683474	2683475	rs138864366	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs138864366-C	0.027	4E-32	(Cyclic AMP-responsive element-binding protein 3-like protein 4, CREB3L4.11308.8.3)	1.03	[0.85-1.21] unit increase	Affymetrix [10572788] (imputed)	N
605	chr6_cox_hap2	2684343	2684344	rs28362359	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs28362359-C	0.875	4E-34				Affymetrix [10369434] (imputed)	N
605	chr6_cox_hap2	2684783	2684784	rs9263869	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCG27	rs9263869-C	NR	1E-8		0.0173241	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_cox_hap2	2684783	2684784	rs9263869	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HCG27	rs9263869-C	NR	3E-8		0.0168281	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_cox_hap2	2684783	2684784	rs9263869	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCG27	rs9263869-C	NR	3E-10		0.0208071	[0.014-0.027] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_cox_hap2	2684900	2684901	rs1793899	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCG27	rs1793899-A	NR	2E-14		0.0870835	[0.065-0.109] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_cox_hap2	2684997	2684998	rs9366770	30980028	de Kovel CGF	2019-04-12	Sci Rep	The molecular genetics of hand preference revisited.	Handedness (Right-handed vs. non-right-handed)	293,857 British ancestry cases, 37,180 British ancestry controls	NA	6p21.33	HCG27	rs9366770-?	NR	2E-9				Affymetrix [~ 15000000] (imputed)	N
605	chr6_cox_hap2	2685297	2685298	rs9263871	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	6p21.33	NR	rs9263871-?		2E-14	(MICA)			Illumina [NR]	N
605	chr6_cox_hap2	2685297	2685298	rs9263871	24925725	Chung SA	2014-06-12	J Am Soc Nephrol	Lupus nephritis susceptibility loci in women with systemic lupus erythematosus.	Lupus nephritis in systemic lupus erythematosus	588 European ancestry cases, 1,412 European ancestry controls	NA	6p21.33	HCG27	rs9263871-G	NR	9E-6	(Dominant)	1.7	[1.35-2.13]	Affymetrix, Illumina [1621689] (imputed)	N
605	chr6_cox_hap2	2685683	2685684	rs9263875	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HCG27	rs9263875-G	NR	6E-11		0.0190363	[0.013-0.025] unit increase	Affymetrix [321169] (imputed)	N
605	chr6_cox_hap2	2686711	2686711	rs146660653	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCG27	rs146660653-ATCTAT	NR	4E-8		0.0193068	[0.012-0.026] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_cox_hap2	2686920	2686921	rs3132510	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Diastolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	6p21.33	HCG27	rs3132510-C	0.6478	3E-14		0.3056	[0.23-0.38] mmHg increase	Affymetrix [NR] (imputed)	N
605	chr6_cox_hap2	2686920	2686921	rs3132510	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p21.33	NR	rs3132510-?	NR	1E-7		5.296	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
605	chr6_cox_hap2	2686920	2686921	rs3132510	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p21.33	NR	rs3132510-?	NR	4E-14		0.2588	[0.19-0.32] unit decrease	Illumina [at least 560000] (imputed)	N
605	chr6_cox_hap2	2687123	2687124	rs3887381	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCG27	rs3887381-T	NR	8E-14		0.0210107	[0.015-0.027] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_cox_hap2	2687123	2687124	rs3887381	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HCG27	rs3887381-T	NR	2E-12		0.0197787	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_cox_hap2	2687123	2687124	rs3887381	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCG27	rs3887381-T	NR	3E-20		0.0282671	[0.022-0.034] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_cox_hap2	2689295	2689296	rs2894181	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCG27	rs2894181-G	NR	5E-9		0.0164875	[0.011-0.022] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_cox_hap2	2689526	2689527	rs28744239	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p21.33	NR	rs28744239-C	0.147	5E-9	(IFNAR2_of_CD20p)			Illumina [5084123] (imputed)	N
605	chr6_cox_hap2	2689698	2689699	rs185386680	26599303	Cheung CL	2016-01-12	Clin Pharmacol Ther	HLA-B*38:02:01 predicts carbimazole/methimazole-induced agranulocytosis.	Antithyroid drug-induced agranulocytosis	20 Southern Chinese ancestry cases, 775 East Asian ancestry controls	4 Southern Chinese ancestry cases, 387 East Asian ancestry controls	6p21.33	HLA-B*38:02:01	rs185386680-?	NR	4E-29		24.7	9.2-66.3	Illumina [5339940] (imputed)	N
605	chr6_cox_hap2	2690714	2690715	rs1619179	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs for peptic ulcer and gastro-oesophageal reflux disease)	53,137 European ancestry cases, 79,230 European ancestry controls, 53,363 East Asian ancestry cases, 125,363 East Asian ancestry controls	NA	6p21.33		rs1619179-C	NR	4E-11		0.0701	[0.049-0.091] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
605	chr6_cox_hap2	2690714	2690715	rs1619179	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (drugs for peptic ulcer and gastro-oesophageal reflux disease)	53,137 European ancestry cases, 79,230 European ancestry controls	NA	6p21.33	HCG27	rs1619179-C	0.154861	4E-11		0.07005687	[0.049-0.091] unit decrease	Affymetrix [7288503] (imputed)	N
605	chr6_cox_hap2	2690714	2690715	rs1619179	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p21.33	NR	rs1619179-?	NR	3E-10		0.0882	[0.061-0.116] unit decrease	Illumina [at least 560000] (imputed)	N
605	chr6_cox_hap2	2691014	2691015	rs4410769	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCG27	rs4410769-T	NR	2E-9		0.0188767	[0.013-0.025] unit increase	Affymetrix [323858] (imputed)	N
605	chr6_cox_hap2	2691014	2691015	rs4410769	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HCG27	rs4410769-T	NR	3E-8		0.0173066	[0.011-0.023] unit increase	Affymetrix [127266] (imputed)	N
605	chr6_cox_hap2	2692278	2692279	rs9501519	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCG27	rs9501519-T	NR	3E-11		0.0187496	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_cox_hap2	2692278	2692279	rs9501519	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HCG27	rs9501519-T	NR	1E-10		0.0181428	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_cox_hap2	2692426	2692427	rs9501520	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCG27	rs9501520-C	NR	2E-10		0.0200324	[0.014-0.026] unit increase	Affymetrix [323858] (imputed)	N
605	chr6_cox_hap2	2692426	2692427	rs9501520	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HCG27	rs9501520-C	NR	6E-10		0.0194184	[0.013-0.026] unit increase	Affymetrix [127266] (imputed)	N
605	chr6_cox_hap2	2692969	2692970	rs17191272	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCG27	rs17191272-C	NR	3E-11		0.020396	[0.014-0.026] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_cox_hap2	2693739	2693740	rs36039697	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.33		rs36039697-G	0.748	2E-17				Affymetrix [10369434] (imputed)	N
605	chr6_cox_hap2	2698962	2698963	rs3869109	22319020	Davies RW	2012-02-07	Circ Cardiovasc Genet	A genome-wide association study for coronary artery disease identifies a novel susceptibility locus in the major histocompatibility complex.	Coronary heart disease	7,123 European ancestry cases, 6,826 European ancestry controls	5,211 European ancestry cases, 5,821 European ancestry controls	6p21.33	HCG27, HLA-C	rs3869109-G	NR	1E-9		1.14	[NR]	Affymetrix [~ 5000000] (imputed)	N
605	chr6_cox_hap2	2700793	2700794	rs9263963	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs9263963-T	0.113293342563644	1E-6	(IGP23)	0.2567	[0.15-0.36] unit increase	Illumina [~ 2500000] (imputed)	N
605	chr6_cox_hap2	2701842	2701843	rs3130467	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (mother's age at death or mother's attained age)	up to 699,000 individuals	NA	6p21.33	NR	rs3130467-G		3E-7				Illumina [458525]	N
605	chr6_cox_hap2	2706044	2706045	rs9263988	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.33		rs9263988-C	0.937	6E-19				Affymetrix [10369434] (imputed)	N
605	chr6_cox_hap2	2707525	2707526	rs9263993	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	6p21.33	HLA region	rs9263993-?	NR	9E-9	(EA)			Affymetrix, Illumina [10537485] (imputed)	N
605	chr6_cox_hap2	2707525	2707526	rs9263993	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	6p21.33	HLA region	rs9263993-?	NR	2E-7				Affymetrix, Illumina [10537485] (imputed)	N
605	chr6_cox_hap2	2707556	2707557	rs6904670	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28- CD8+ T cell %CD8+ T cell	3,440 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs6904670-G	0.64142	3E-8		0.1458	[0.094-0.197] unit decrease	Illumina [18357815] (imputed)	N
605	chr6_cox_hap2	2709973	2709974	rs6928399	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG299F13.16	rs6928399-T	NR	7E-12		0.0204256	[0.015-0.026] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_cox_hap2	2709973	2709974	rs6928399	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG299F13.16	rs6928399-T	NR	9E-11		0.0193191	[0.013-0.025] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_cox_hap2	2709973	2709974	rs6928399	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG299F13.16	rs6928399-T	NR	7E-11		0.0196879	[0.014-0.026] unit increase	Affymetrix [321169] (imputed)	N
605	chr6_cox_hap2	2710751	2710752	rs7769059	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	6p21.33	HCG27	rs7769059-G	0.716625	1E-12		0.0150833	[0.011-0.019] unit increase	Affymetrix [NR] (imputed)	N
605	chr6_cox_hap2	2712023	2712024	rs3134783	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Sarcoidosis	1,718 European ancestry cases, 484,955 European ancestry controls, 220 East Asian ancestry cases, 177,667 East Asian ancestry controls	NA	6p21.33		rs3134783-A	NR	6E-9		0.2583	[0.17-0.35] unit increase	Affymetrix, Illumina [25845061] (imputed)	N
605	chr6_cox_hap2	2712274	2712275	rs3130941	24324648	Yatagai Y	2013-12-04	PLoS One	Genome-wide association study for levels of total serum IgE identifies HLA-C in a Japanese population.	IgE levels	967 Japanese ancestry individuals, 213 Japanese ancestry asthmatic individuals	1,894 Japanese ancestry individuals, 580 Japanese ancestry asthmatic individuals	6p21.33	HCG27, HLA-C	rs3130941-C	0.25	1E-10		0.098	unit increase	Illumina [479940]	N
605	chr6_cox_hap2	2713963	2713964	rs3130473	29534301	Nishida N	2018-03-13	Hepatology	Key HLA-DRB1-DQB1 haplotypes and role of the BTNL2 gene for response to a hepatitis B vaccine.	Response to hepatitis B vaccine	107 Japanese ancestry low responder individuals, 351 Japanese ancestry intermediate responder individuals, 735 Japanese ancestry high responder individuals	NA	6p21.33	HLA-C	rs3130473-?		8E-6		0.128	unit decrease	Affymetrix [427664]	N
605	chr6_cox_hap2	2714220	2714221	rs3869114	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.33		rs3869114-G	NR	2E-7		1.204	[1.122-1.292]	Affymetrix [7846216] (imputed)	N
605	chr6_cox_hap2	2714520	2714521	rs11967684	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	6p21.33	intergenic	rs11967684-A	0.3428	2E-24		0.03858957	[0.031-0.046] unit increase	Affymetrix [~ 2500000] (imputed)	N
605	chr6_cox_hap2	2714520	2714521	rs11967684	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	6p21.33	intergenic	rs11967684-A	0.3428	1E-29		0.04284561	[0.035-0.05] unit increase	Affymetrix [~ 2500000] (imputed)	N
605	chr6_cox_hap2	2715524	2715525	rs7757622	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG299F13.16	rs7757622-C	NR	2E-16		0.023531	[0.018-0.029] unit decrease	Affymetrix [321169] (imputed)	N
605	chr6_cox_hap2	2719418	2719419	rs3869115	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	46,511 Asian ancestry cases, 169,776 Asian ancestry controls	NA	6p21.33	NR	rs3869115-G	0.1981	1E-17		0.1004	[0.077-0.123] unit decrease	Affymetrix, Illumina [1077427] (imputed)	N
605	chr6_cox_hap2	2719418	2719419	rs3869115	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p21.33	HCG27, HLA-C	rs3869115-C	0.06	6E-7	(Turkish)	2.23	[1.62-3.08]	Illumina [up to 547389]	N
605	chr6_cox_hap2	2719710	2719711	rs3134770	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p21.33	NR	rs3134770-?	NR	8E-8		0.0723	[0.046-0.099] unit increase	Illumina [at least 560000] (imputed)	N
605	chr6_cox_hap2	2720928	2720929	rs3130685	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Effector Memory CD8+ T cell Absolute Count	3,395 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs3130685-T	0.34389	2E-8		0.1803	[0.12-0.24] unit increase	Illumina [18332267] (imputed)	N
605	chr6_cox_hap2	2720928	2720929	rs3130685	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8+ T cell Absolute Count	3,652 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs3130685-T	0.34283	4E-11		0.1887	[0.13-0.24] unit increase	Illumina [18427348] (imputed)	N
605	chr6_cox_hap2	2720928	2720929	rs3130685	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8+ T cell %leukocyte	3,668 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs3130685-T	0.34283	1E-9		0.1801	[0.12-0.24] unit increase	Illumina [18430788] (imputed)	N
605	chr6_cox_hap2	2720928	2720929	rs3130685	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28- CD8+ T cell Absolute Count	3,408 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs3130685-T	0.3439	3E-10		0.1894	[0.13-0.25] unit increase	Illumina [18340221] (imputed)	N
605	chr6_cox_hap2	2720928	2720929	rs3130685	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD127- CD8+ T cell Absolute Count	3,371 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs3130685-T	0.34485	9E-10		0.1905	[0.13-0.25] unit increase	Illumina [18321960] (imputed)	N
605	chr6_cox_hap2	2722477	2722478	rs9461666	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6p21.33		rs9461666-G	0.021815	7E-10		0.0478569	[0.033-0.063] unit increase	Affymetrix [93095623] (imputed)	N
605	chr6_cox_hap2	2722767	2722768	rs5875302	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	349,856 European ancestry individuals, 91,908 East Asian ancestry individuals	NA	6p21.33		rs5875302-C	NR	9E-24		0.046	[0.037-0.055] unit decrease	Affymetrix, Illumina [20529536] (imputed)	N
605	chr6_cox_hap2	2723300	2723301	rs3132497	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG299F13.16	rs3132497-G	NR	3E-9		0.0221455	[0.015-0.029] unit increase	Affymetrix [323123] (imputed)	N
605	chr6_cox_hap2	2726465	2726466	rs117506082	32072174	Okamoto D	2020-02-19	Inflamm Bowel Dis	Genetic Analysis of Ulcerative Colitis in Japanese Individuals Using Population-specific SNP Array.	Ulcerative colitis	601 Japanese ancestry cases, 1,962 Japanese ancestry controls	1,075 Japanese ancestry cases, 419 Japanese ancestry controls	6p21.33	HLA	rs117506082-G	NR	4E-88		3.39	[2.99-3.83]	NR [4760823] (imputed)	N
605	chr6_cox_hap2	2726557	2726558	rs1639106	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG299F13.16	rs1639106-T	NR	9E-12		0.0601547	[0.043-0.077] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_cox_hap2	2726770	2726771	rs117759870	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs117759870-?		6E-8		1.06	[1.04-1.09]	Illumina [7645193] (imputed)	N
605	chr6_cox_hap2	2732228	2732229	rs3130427	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	6p21.33		rs3130427-G	0.594789	2E-27		0.029043514	[0.024-0.034] unit increase	Affymetrix [93095623] (imputed)	N
605	chr6_cox_hap2	2733202	2733203	rs55839536	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs55839536-A	NR	2E-8		0.023416	[0.015-0.032] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_cox_hap2	2733485	2733486	rs7449932	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	6p21.33		rs7449932-C	0.223006	2E-9		0.0272642	[0.018-0.036] unit increase	NR [11722792] (imputed)	N
605	chr6_cox_hap2	2734031	2734032	rs3130436	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	6p21.33	NR	rs3130436-?	NR	4E-7		0.0523	[0.032-0.072] unit decrease	Illumina [at least 560000] (imputed)	N
605	chr6_cox_hap2	2734031	2734032	rs3130436	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	6p21.33	HCG27, HLA-C	rs3130436-?	NR	4E-7		1.0537407	[1.03-1.08]	Illumina [13754664] (imputed)	N
605	chr6_cox_hap2	2734271	2734272	rs3130439	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LILRB1	5,363 Icelandic ancestry individuals	NA	6p21.33		rs3130439-G	0.4964	8E-23		0.179906	[0.14-0.22] unit decrease	Illumina [7506463] (imputed)	N
605	chr6_cox_hap2	2734547	2734548	rs17197839	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-C	rs17197839-A	NR	1E-8		0.0267548	[0.018-0.036] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_cox_hap2	2734547	2734548	rs17197839	33549134	Adolphe C	2021-02-06	Genome Med	Genetic and functional interaction network analysis reveals global enrichment of regulatory T cell genes influencing basal cell carcinoma susceptibility.	Basal cell carcinoma	17,416 European ancestry cases, 375,455 European ancestry controls	NA	6p21.33	HLA-C	rs17197839-A	0.118172	3E-11		0.1165139	[0.082-0.151] unit decrease	Affymetrix [7260263] (imputed)	N
605	chr6_cox_hap2	2734599	2734600	rs1793892	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs1793892-C	NR	2E-9		0.0258258	[0.017-0.034] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_cox_hap2	2734599	2734600	rs1793892	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-C	rs1793892-C	NR	3E-9		0.0256321	[0.017-0.034] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_cox_hap2	2734617	2734618	rs17191538	33574277	Kawai Y	2021-02-11	NPJ Genom Med	Mapping of susceptible variants for cold medicine-related Stevens-Johnson syndrome by whole-genome resequencing.	Cold medicine-related Stevens-Johnson syndrome/toxic epidermal necrolysis (SJS/TEN) with severe ocular complications	133 Japanese ancestry cases, 418 Japanese ancestry controls	NA	6p21.33		rs17191538-G	0.2231	7E-7		2.483		Illumina [7608150]	N
605	chr6_cox_hap2	2734916	2734917	rs3095254	25096241	Keller MF	2014-08-05	Hum Mol Genet	Trans-ethnic meta-analysis of white blood cell phenotypes.	Monocyte count	9,810 Japanese ancestry individuals, 16,550 European ancestry individuals, 7,369 African American individuals	NA	6p21.33	MHC	rs3095254-C	0.461	8E-9	(Japanese)	0.035	[0.023-0.047] unit increase	Illumina [NR] (imputed)	N
605	chr6_cox_hap2	2734916	2734917	rs3095254	21738478	Okada Y	2011-06-30	PLoS Genet	Identification of nine novel loci associated with white blood cell subtypes in a Japanese population.	White blood cell types	8,794 Japanese ancestry individuals	5,998 Japanese ancestry individuals	6p21.33	MHC	rs3095254-C	0.46	6E-11	(monocyte count)	0.074	[0.05-0.09] unit increase	Illumina [2178645] (imputed)	N
605	chr6_cox_hap2	2735430	2735431	rs1793889	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.33	CCHCR1, CDSN, HCG27, HLA-C, POU5F1, PSORS1C1, PSORS1C2, PSORS1C3, TCF19	rs1793889-?		1E-11		1.0869565	[1.06-1.11]	Affymetrix, Illumina [NR]	N
605	chr6_cox_hap2	2737905	2737906	rs9264277	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.33		rs9264277-T	0.367	2E-13				Affymetrix [10369434] (imputed)	N
605	chr6_cox_hap2	2737905	2737906	rs9264277	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.33		rs9264277-T	0.367	4E-8				Affymetrix [10369434] (imputed)	N
605	chr6_cox_hap2	2737905	2737906	rs9264277	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.33		rs9264277-T	0.367	2E-36				Affymetrix [10369434] (imputed)	N
605	chr6_cox_hap2	2737905	2737906	rs9264277	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	6p21.33		rs9264277-T	0.367	1E-9				Affymetrix [10369434] (imputed)	N
605	chr6_cox_hap2	2737905	2737906	rs9264277	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs9264277-T	0.367	6E-12				Affymetrix [10369434] (imputed)	N
605	chr6_cox_hap2	2737955	2737956	rs201871433	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	6p21.33		rs201871433-C	0.598843295	3E-14		0.080714226	[0.06-0.101] unit increase	Illumina [13134967] (imputed)	N
605	chr6_cox_hap2	2740007	2740008	rs2440367	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs2440367-T	NR	4E-8		0.0177003	[0.011-0.024] unit increase	Affymetrix [321016] (imputed)	N
605	chr6_cox_hap2	2740474	2740475	rs150543164	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	6p21.33	NR	rs150543164-C	0.971256	7E-11		0.0420252	[0.029-0.055] unit decrease	NR [NR]	N
605	chr6_cox_hap2	2741423	2741424	rs9264354	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	6p21.33		rs9264354-T	0.225	2E-41				Affymetrix [10369434] (imputed)	N
605	chr6_cox_hap2	2741424	2741425	rs9264355	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs9264355-T	NR	2E-11		0.0253701	[0.018-0.033] unit increase	Affymetrix [321016] (imputed)	N
605	chr6_cox_hap2	2741595	2741596	rs6939900	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	6p21.33		rs6939900-C	0.644363	2E-13		0.0298309	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
605	chr6_cox_hap2	2741595	2741596	rs6939900	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	6p21.33		rs6939900-C	0.644357	3E-11		0.0278375	[0.02-0.036] unit decrease	NR [11722792] (imputed)	N
605	chr6_cox_hap2	2741595	2741596	rs6939900	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.33		rs6939900-T	0.35467	3E-26		0.03356077	[0.027-0.04] unit increase	Affymetrix [93095623] (imputed)	N
605	chr6_cox_hap2	2741778	2741779	rs17191797	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	6p21.33	intergenic	rs17191797-G	0.0881	1E-10		0.04047984	[0.028-0.053] unit decrease	Affymetrix [~ 2500000] (imputed)	N
605	chr6_cox_hap2	2742789	2742790	rs2844626	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Varicose veins	22,037 European ancestry cases, 437,665 European ancestry controls, 474 East Asian ancestry cases, 178,252 East Asian ancestry controls	NA	6p21.33		rs2844626-T	NR	1E-10		0.0734	[0.051-0.096] unit decrease	Affymetrix, Illumina [25842955] (imputed)	N
605	chr6_cox_hap2	2742960	2742961	rs9264408	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs9264408-G	NR	5E-13		0.0253984	[0.019-0.032] unit decrease	Affymetrix [319769] (imputed)	N
605	chr6_cox_hap2	2742960	2742961	rs9264408	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-C	rs9264408-G	NR	3E-12		0.0245478	[0.018-0.031] unit decrease	Affymetrix [319769] (imputed)	N
605	chr6_cox_hap2	2743170	2743171	rs9264413	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	6p21.33	intergenic	rs9264413-T	0.8098	4E-40		0.0600596	[0.051-0.069] unit decrease	Affymetrix [~ 2500000] (imputed)	N
605	chr6_cox_hap2	2743233	2743234	rs17192134	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	6p21.33		rs17192134-G	0.916	3E-52				Affymetrix [10369434] (imputed)	N
605	chr6_cox_hap2	2743233	2743234	rs17192134	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p21.33	NR	rs17192134-T	0.084521	2E-25		0.048713	[0.04-0.058] unit increase	Affymetrix [93095623] (imputed)	N
605	chr6_cox_hap2	2743677	2743678	rs17192225	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Prostate cancer	7,438 White British ancestry cases, 118,206 White British ancestry controls	NA	6p21.33		rs17192225-?	NR	2E-6		1.12175	[1.07-1.17]	NR [680312]	N
605	chr6_cox_hap2	2743956	2743957	rs9357120	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	91,908 East Asian ancestry individuals	NA	6p21.33		rs9357120-A	0.563923	1E-31		0.0533207	[0.044-0.062] unit decrease	Illumina [13469940] (imputed)	N
605	chr6_cox_hap2	2743956	2743957	rs9357120	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	81,042 East Asian ancestry individuals	NA	6p21.33	NR	rs9357120-T	0.42999	6E-32		0.058958	[0.049-0.069] SD units increase	Affymetrix, Illumina [16286709] (imputed)	N
605	chr6_cox_hap2	2745227	2745228	rs2853961	31080455	Fatumo S	2019-04-26	Front Genet	Complimentary Methods for Multivariate Genome-Wide Association Study Identify New Susceptibility Genes for Blood Cell Traits.	Blood cell traits (multivariate analysis)	up to 6,407 Sub-Saharan African ancestry individuals	NA	6p21.33	HLA-C	rs2853961-?	NR	4E-8				Illumina [20594536] (imputed)	N
605	chr6_cox_hap2	2745349	2745350	rs3130542	25802187	Jiang DK	2015-04-28	Hepatology	Genetic variants in five novel loci including CFB and CD40 predispose to chronic hepatitis B.	Chronic hepatitis B infection	2,514 Chinese ancestry cases, 1,130 Chinese ancestry controls	6,600 Chinese ancestry cases, 8,127 Chinese ancestry controls	6p21.33	HLA-C	rs3130542-A	0.16	9E-7		1.17	[1.10-1.24]	Illumina [3680900] (imputed)	N
605	chr6_cox_hap2	2745349	2745350	rs3130542	24162738	Hu Z	2013-10-27	Nat Genet	New loci associated with chronic hepatitis B virus infection in Han Chinese.	Hepatitis B	951 Han Chinese ancestry HBV carrier cases, 937 Han Chinese ancestry HBV cleared controls	4,230 Chinese ancestry HBV carrier cases, 3,051 Chinese ancestry HBV cleared controls, 2,622 Chinese ancestry controls	6p21.33	HLA-C	rs3130542-A	0.13	9E-14		1.33	[1.23-1.44]	Illumina [490610]	N
605	chr6_cox_hap2	2745690	2745691	rs2524108	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs2524108-G	NR	1E-9		0.0191519	[0.013-0.025] unit decrease	Affymetrix [319769] (imputed)	N
605	chr6_cox_hap2	2745690	2745691	rs2524108	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-C	rs2524108-G	NR	4E-9		0.0186193	[0.012-0.025] unit decrease	Affymetrix [319769] (imputed)	N
605	chr6_cox_hap2	2745690	2745691	rs2524108	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.33	HLA-C	rs2524108-G	0.273435	6E-44		0.050841797	[0.044-0.058] unit decrease	Affymetrix [93095623] (imputed)	N
605	chr6_cox_hap2	2745811	2745812	rs2844623	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	6p21.33	POU5F1, TCF19	rs2844623-C	0.78	1E-17		1.1	1.08-1.12	Illumina [12557761] (imputed)	N
605	chr6_cox_hap2	2746092	2746093	rs2524106	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs2524106-A	NR	1E-8		0.0194959	[0.013-0.026] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_cox_hap2	2746092	2746093	rs2524106	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-C	rs2524106-A	NR	4E-8		0.0188058	[0.012-0.026] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_cox_hap2	2746178	2746179	rs2524105	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	86,890 East Asian ancestry individuals	NA	6p21.33	NR	rs2524105-G	0.317247	4E-41		0.06908	[0.059-0.079] SD units increase	Affymetrix, Illumina [16279099] (imputed)	N
605	chr6_cox_hap2	2747748	2747749	rs9264533	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	6p21.33	HLA-C	rs9264533-C	0.8091	4E-33		0.05433897	[0.045-0.063] unit increase	Affymetrix [~ 2500000] (imputed)	N
605	chr6_cox_hap2	2747895	2747896	rs185207145	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin	108,054 Japanese ancestry individuals	NA	6p21.33	HCG27, HLA-C	rs185207145-?	NR	1E-8		0.05419	[0.036-0.073] unit increase novel	Illumina [6108953] (imputed)	N
605	chr6_cox_hap2	2748445	2748446	rs113509869	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	6p21.33	HLA-C	rs113509869-A	0.123764	9E-21		0.036061548	[0.029-0.044] unit decrease	Affymetrix [93095623] (imputed)	N
605	chr6_cox_hap2	2748610	2748610	rs139175860	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	6p21.33		rs139175860-TC	0.201723	2E-12		0.0316515	[0.023-0.04] unit increase	Illumina [13476299] (imputed)	N
605	chr6_cox_hap2	2749000	2749001	rs9264579	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	6p21.33		rs9264579-A	0.344224	5E-18		0.0325012	[0.025-0.04] unit increase	Illumina [13476266] (imputed)	N
605	chr6_cox_hap2	2749369	2749370	rs2853951	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-C	rs2853951-C	NR	3E-19		0.0279053	[0.022-0.034] unit increase	Affymetrix [323123] (imputed)	N
605	chr6_cox_hap2	2749429	2749430	rs2853950	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs2853950-T	NR	1E-10		0.0182212	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_cox_hap2	2749429	2749430	rs2853950	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-C	rs2853950-T	NR	4E-10		0.0177105	[0.012-0.023] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_cox_hap2	2749429	2749430	rs2853950	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HLA-C	rs2853950-T	NR	2E-9		0.0171726	[0.012-0.023] unit increase	Affymetrix [321169] (imputed)	N
605	chr6_cox_hap2	2749664	2749665	rs34131062	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	6p21.33	MICB	rs34131062-?	NR	3E-10	(S_VLDL_TG)	0.07202289	NR unit increase	Illumina [609262]	N
605	chr6_cox_hap2	2749664	2749665	rs34131062	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	6p21.33	MICB	rs34131062-?	NR	1E-9	(VLDL_TG)	0.071520545	NR unit increase	Illumina [609262]	N
605	chr6_cox_hap2	2749664	2749665	rs34131062	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	6p21.33	MICB	rs34131062-?	NR	8E-9	(S_VLDL_TG)	0.07218766	NR unit increase	Illumina [609262]	N
605	chr6_cox_hap2	2749664	2749665	rs34131062	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	6p21.33	MICB	rs34131062-?	NR	1E-8	(VLDL_TG)	0.0707539	NR unit increase	Illumina [609262]	N
605	chr6_cox_hap2	2749721	2749722	rs2524096	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TXNDC15	5,352 Icelandic ancestry individuals	NA	6p21.33		rs2524096-T	0.3782	1E-49		0.267181	[0.23-0.3] unit decrease	Illumina [7506463] (imputed)	N
605	chr6_cox_hap2	2749821	2749822	rs1049281	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI in non-smokers	75,379 European ancestry women, 45,811 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	6p21.33	HLA-C	rs1049281-C	0.653	2E-8		0.027	[0.017-0.037] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
605	chr6_cox_hap2	2749821	2749822	rs1049281	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (joint analysis main effects and smoking interaction)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	6p21.33	HLA-C	rs1049281-C	0.652	2E-10				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
605	chr6_cox_hap2	2749821	2749822	rs1049281	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	6p21.33	HLA-C	rs1049281-C	0.652	1E-18		0.026	[0.02-0.032] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
605	chr6_cox_hap2	2749939	2749940	rs3207561	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.33		rs3207561-A	0.623	4E-27				Affymetrix [10369434] (imputed)	N
605	chr6_cox_hap2	2749941	2749942	rs3207555	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	6p21.33	HLA-C	rs3207555-A	0.34675	4E-12		0.017413307	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
606	chr6_cox_hap2	2753685	2753686	rs2074488	23144326	Kim DK	2012-11-09	Am J Respir Crit Care Med	Genome-wide association analysis of blood biomarkers in chronic obstructive pulmonary disease.	Chronic obstructive pulmonary disease-related biomarkers	Up to 1,951 European ancestry smokers	NA	6p21.33	HLA-C	rs2074488-T	0.13	2E-10	(SP-D)			Illumina [588352]	N
606	chr6_cox_hap2	2753733	2753734	rs9357121	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.33		rs9357121-T	0.966	9E-15				Affymetrix [10369434] (imputed)	N
606	chr6_cox_hap2	2753733	2753734	rs9357121	26582766	Lu X	2015-11-18	Circ Cardiovasc Genet	Genetic Susceptibility to Lipid Levels and Lipid Change Over Time and Risk of Incident Hyperlipidemia in Chinese Populations.	LDL cholesterol	8,344 Han Chinese ancestry individuals	14,739 Han Chinese ancestry individuals	6p21.33	HLA-C	rs9357121-T	0.85	3E-10		1.842	[1.25-2.43] unit increase	Affymetrix, Illumina [2573667] (imputed)	N
606	chr6_cox_hap2	2753733	2753734	rs9357121	26582766	Lu X	2015-11-18	Circ Cardiovasc Genet	Genetic Susceptibility to Lipid Levels and Lipid Change Over Time and Risk of Incident Hyperlipidemia in Chinese Populations.	Cholesterol, total	8,344 Han Chinese ancestry individuals	14,739 Han Chinese ancestry individuals	6p21.33	HLA-C	rs9357121-T	0.85	2E-10		2.062	[1.42-2.71] unit increase	Affymetrix, Illumina [2573667] (imputed)	N
606	chr6_cox_hap2	2753889	2753890	rs4361609	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	6p21.33	HLA-C, USP8P1	rs4361609-C	0.120687	1E-47		0.05005804	[0.043-0.057] unit decrease	Affymetrix [93095623] (imputed)	N
606	chr6_cox_hap2	2753966	2753967	rs2249741	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs2249741-A	NR	1E-14		0.0216601	[0.016-0.027] unit decrease	Affymetrix [319769] (imputed)	N
606	chr6_cox_hap2	2753966	2753967	rs2249741	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-C	rs2249741-A	NR	3E-13		0.0205289	[0.015-0.026] unit decrease	Affymetrix [319769] (imputed)	N
606	chr6_cox_hap2	2753966	2753967	rs2249741	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs2249741-A	NR	1E-11		0.0190915	[0.014-0.025] unit increase	Affymetrix [321016] (imputed)	N
606	chr6_cox_hap2	2753966	2753967	rs2249741	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HLA-C	rs2249741-A	NR	4E-13		0.0206435	[0.015-0.026] unit decrease	Affymetrix [321169] (imputed)	N
606	chr6_cox_hap2	2753975	2753976	rs2249742	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large LDL	115,082 European ancestry individuals	NA	6p21.33		rs2249742-C	0.555622	3E-9		0.0244495	[0.016-0.033] unit decrease	NR [11722792] (imputed)	N
606	chr6_cox_hap2	2753975	2753976	rs2249742	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in LDL	115,082 European ancestry individuals	NA	6p21.33		rs2249742-C	0.555622	2E-9		0.0247133	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
606	chr6_cox_hap2	2753975	2753976	rs2249742	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large LDL	115,082 European ancestry individuals	NA	6p21.33		rs2249742-C	0.555622	2E-8		0.0230779	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
606	chr6_cox_hap2	2753975	2753976	rs2249742	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in LDL	115,082 European ancestry individuals	NA	6p21.33		rs2249742-C	0.555622	2E-8		0.0234686	[0.015-0.032] unit decrease	NR [11722792] (imputed)	N
606	chr6_cox_hap2	2753975	2753976	rs2249742	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	LDL cholesterol levels	115,082 European ancestry individuals	NA	6p21.33		rs2249742-C	0.555622	3E-9		0.0245814	[0.016-0.033] unit decrease	NR [11722792] (imputed)	N
606	chr6_cox_hap2	2753975	2753976	rs2249742	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large LDL	115,082 European ancestry individuals	NA	6p21.33		rs2249742-C	0.555622	8E-10		0.025273	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
606	chr6_cox_hap2	2753975	2753976	rs2249742	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large LDL	115,082 European ancestry individuals	NA	6p21.33		rs2249742-C	0.555622	4E-9		0.0242248	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
606	chr6_cox_hap2	2753975	2753976	rs2249742	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs2249742-C	0.559	5E-180				Affymetrix [10369434] (imputed)	N
606	chr6_cox_hap2	2753975	2753976	rs2249742	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p21.33	HLA-C, USP8P1	rs2249742-T	0.441322	3E-27		0.03629834	[0.03-0.043] unit increase	Affymetrix [93095623] (imputed)	N
606	chr6_cox_hap2	2753975	2753976	rs2249742	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	6p21.33	HLA-C, USP8P1	rs2249742-T	0.441347	6E-25		0.026632145	[0.022-0.032] unit increase	Affymetrix [93095623] (imputed)	N
606	chr6_cox_hap2	2753975	2753976	rs2249742	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.33	HLA-C, USP8P1	rs2249742-T	0.441398	2E-70		0.049990416	[0.044-0.056] unit increase	Affymetrix [93095623] (imputed)	N
606	chr6_cox_hap2	2753975	2753976	rs2249742	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	6p21.33	NR	rs2249742-T	0.448909	4E-405		0.079592	[0.076-0.083] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
606	chr6_cox_hap2	2753975	2753976	rs2249742	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p21.33	NR	rs2249742-T	0.465758	6E-421				Affymetrix, Illumina [23472807] (imputed)	N
606	chr6_cox_hap2	2753975	2753976	rs2249742	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	White blood cell count	8,825 African American individuals, 18,251 Hispanic/Latino individuals, 543 Asian ancestry individuals, 606 Native American ancestry individuals, 383 individuals	NA	6p21.33	NR	rs2249742-?	NR	2E-7		0.01238585	[0.0077-0.0171] unit increase	Illumina [30613845] (imputed)	N
606	chr6_cox_hap2	2753975	2753976	rs2249742	28158719	Jain D	2017-02-01	Hum Mol Genet	Genome-wide association of white blood cell counts in Hispanic/Latino Americans: the Hispanic Community Health Study/Study of Latinos.	White blood cell count (lymphocyte)	up to 11,809 Hispanic/Latino American individuals	up to 7,200 Hispanic/Latino American individuals	6p21.33	HLA-C	rs2249742-C	0.486	4E-8		0.0219	[0.014-0.03] unit decrease	Illumina [27887661] (imputed)	N
606	chr6_cox_hap2	2753975	2753976	rs2249742	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	6p21.33	HLA-C, USP8P1	rs2249742-T	0.4405	5E-71		0.06448932	[0.057-0.072] unit increase	Affymetrix [~ 2500000] (imputed)	N
606	chr6_cox_hap2	2754125	2754126	rs9264681	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs9264681-C	NR	1E-13		0.0225581	[0.017-0.029] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_cox_hap2	2754125	2754126	rs9264681	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-C	rs9264681-C	NR	3E-13		0.0223033	[0.016-0.028] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_cox_hap2	2754125	2754126	rs9264681	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-C	rs9264681-C	NR	2E-11		0.0221737	[0.016-0.029] unit decrease	Affymetrix [323123] (imputed)	N
606	chr6_cox_hap2	2754125	2754126	rs9264681	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HLA-C	rs9264681-C	NR	4E-10		0.0192801	[0.013-0.025] unit increase	Affymetrix [321169] (imputed)	N
606	chr6_cox_hap2	2754286	2754287	rs5010528	28062682	Carr DF	2017-01-05	J Antimicrob Chemother	Genome-wide association study of nevirapine hypersensitivity in a sub-Saharan African HIV-infected population.	Nevirapine-induced hypersensitivity in HIV (Stevens-Johnson syndrome or toxic epidermal necrosis)	51 Sub-saharan African ancestry cases, 182 Sub-saharan African ancestry controls	11 Sub-Saharan African ancestry cases, 27 African ancestry cases, 60 Sub-Saharan African ancestry controls, 8 African ancestry controls	6p21.33	HLA-C	rs5010528-G	0.14	8E-8		4.84	[2.71-8.61]	Illumina [14218511] (imputed)	N
606	chr6_cox_hap2	2754346	2754347	rs2523599	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs2523599-C	NR	1E-21		0.0275701	[0.022-0.033] unit decrease	Affymetrix [319769] (imputed)	N
606	chr6_cox_hap2	2754346	2754347	rs2523599	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-C	rs2523599-C	NR	7E-20		0.0263436	[0.021-0.032] unit decrease	Affymetrix [319769] (imputed)	N
606	chr6_cox_hap2	2754346	2754347	rs2523599	33608531	Wu Y	2021-02-19	Nat Commun	GWAS of peptic ulcer disease implicates Helicobacter pylori infection, other gastrointestinal disorders and depression.	Irritable bowel syndrome	28,518 European ancestry cases, 426,803 European ancestry controls	NA	6p21.33	HLA-C	rs2523599-C	0.39	4E-8		0.95		NR [8546065] (imputed)	N
606	chr6_cox_hap2	2754436	2754437	rs6900444	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs6900444-T	NR	4E-11		0.0186301	[0.013-0.024] unit decrease	Affymetrix [321016] (imputed)	N
606	chr6_cox_hap2	2754436	2754437	rs6900444	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-C	rs6900444-T	NR	2E-15		0.0243915	[0.018-0.03] unit decrease	Affymetrix [323123] (imputed)	N
606	chr6_cox_hap2	2754436	2754437	rs6900444	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	6p21.33	RNU6-283P	rs6900444-?	NR	1E-38		0.0342	[0.029-0.039] unit increase	Affymetrix [5701386] (imputed)	N
606	chr6_cox_hap2	2754524	2754525	rs6900323	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs6900323-G	NR	3E-10		0.022084	[0.015-0.029] unit decrease	Affymetrix [319769] (imputed)	N
606	chr6_cox_hap2	2754524	2754525	rs6900323	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-C	rs6900323-G	NR	2E-9		0.0211782	[0.014-0.028] unit decrease	Affymetrix [319769] (imputed)	N
606	chr6_cox_hap2	2754524	2754525	rs6900323	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-C	rs6900323-G	NR	2E-8		0.0215495	[0.014-0.029] unit increase	Affymetrix [323123] (imputed)	N
606	chr6_cox_hap2	2755333	2755334	rs2524081	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p21.33	HLA-C	rs2524081-C		2E-19		0.03	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
606	chr6_cox_hap2	2755333	2755334	rs2524081	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	6p21.33	HLA-C, USP8P1	rs2524081-C	0.1374	5E-11		0.03378154	[0.024-0.044] unit decrease	Affymetrix [~ 2500000] (imputed)	N
606	chr6_cox_hap2	2756596	2756597	rs9461680	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6p21.33		rs9461680-C	0.825202	3E-9		0.0310951	[0.021-0.041] unit increase	NR [11722792] (imputed)	N
606	chr6_cox_hap2	2756596	2756597	rs9461680	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	6p21.33		rs9461680-C	0.825202	9E-11		0.032856	[0.023-0.043] unit increase	NR [11722792] (imputed)	N
606	chr6_cox_hap2	2756608	2756609	rs9468911	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6p21.33		rs9468911-G	0.825215	1E-11		0.0349605	[0.025-0.045] unit decrease	NR [11722792] (imputed)	N
606	chr6_cox_hap2	2756608	2756609	rs9468911	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6p21.33		rs9468911-G	0.825215	8E-12		0.0354702	[0.025-0.046] unit increase	NR [11722792] (imputed)	N
606	chr6_cox_hap2	2756827	2756828	rs73390981	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	6p21.33		rs73390981-G	0.922	1E-33				Affymetrix [10369434] (imputed)	N
606	chr6_cox_hap2	2756827	2756828	rs73390981	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	6p21.33	USP8P1	rs73390981-A	0.078064	3E-29		0.049712982	[0.041-0.058] unit increase	Affymetrix [93095623] (imputed)	N
606	chr6_cox_hap2	2756864	2756865	rs13200569	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	6p21.33	USP8P1	rs13200569-A	0.285539	7E-13		0.01938597	[0.014-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
606	chr6_cox_hap2	2757077	2757078	rs4141168	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	6p21.33		rs4141168-A	0.786459	2E-8		0.0267074	[0.017-0.036] unit increase	NR [11722792] (imputed)	N
606	chr6_cox_hap2	2757079	2757080	rs2524076	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	USP8P1	rs2524076-G	NR	2E-14		0.0235806	[0.018-0.03] unit increase	Affymetrix [323123] (imputed)	N
606	chr6_cox_hap2	2757079	2757080	rs2524076	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	USP8P1	rs2524076-G	NR	4E-15		0.0225429	[0.017-0.028] unit decrease	Affymetrix [321169] (imputed)	N
606	chr6_cox_hap2	2757133	2757134	rs3130696	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	6p21.33	MICB	rs3130696-?	NR	5E-10	(XS_VLDL_TG)	0.06374044	NR unit decrease	Illumina [609262]	N
606	chr6_cox_hap2	2757133	2757134	rs3130696	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	6p21.33	MICB	rs3130696-?	NR	3E-6	(XS_VLDL_TG)	0.059096735	NR unit decrease	Illumina [609262]	N
606	chr6_cox_hap2	2757144	2757145	rs3094680	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	6p21.33	HLA	rs3094680-T	0.601913	1E-8		1.05	[1.03-1.06]	NR [8126035] (imputed)	N
606	chr6_cox_hap2	2758038	2758039	rs2524069	27327535	Laville V	2016-06-21	Pigment Cell Melanoma Res	A genome-wide association study in Caucasian women suggests the involvement of HLA genes in the severity of facial solar lentigines.	Severity of facial solar lentigines	502 French ancestry individuals		6p21.33	USP8P1, HLA-C	rs2524069-T	0.13	3E-7				Illumina [795063]	N
606	chr6_cox_hap2	2758209	2758210	rs6919908	26007630	Swaminathan B	2015-05-26	Nat Commun	Variants in ELL2 influencing immunoglobulin levels associate with multiple myeloma.	Multiple myeloma and monoclonal gammopathy	2,194 European ancestry multiple myeloma cases, 251 European ancestry monoclonal gammopathy cases, 294,390 European ancestry controls	586 European ancestry multiple myeloma cases, 2,111 European ancestry controls	6p21.33	PSORS1C2, HLA	rs6919908-T	0.23	6E-10		0.23	[NR] unit increase	Illumina [12100000] (imputed)	N
606	chr6_cox_hap2	2758209	2758210	rs6919908	26007630	Swaminathan B	2015-05-26	Nat Commun	Variants in ELL2 influencing immunoglobulin levels associate with multiple myeloma.	Multiple myeloma	2,194 European ancestry cases, 222,555 European ancestry controls	586 European ancestry cases, 2,111 European ancestry controls	6p21.33	PSORS1C2, HLA	rs6919908-T	0.23	4E-10		0.25	[NR] unit increase	Illumina [12100000] (imputed)	N
606	chr6_cox_hap2	2758609	2758610	rs9264744	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein KIR2DS2	5,354 Icelandic ancestry individuals	NA	6p21.33		rs9264744-A	0.2099	4E-24		0.220034	[0.18-0.26] unit increase	Illumina [7506463] (imputed)	N
606	chr6_cox_hap2	2758609	2758610	rs9264744	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	USP8P1	rs9264744-A	NR	2E-11		0.0258443	[0.018-0.033] unit decrease	Affymetrix [321169] (imputed)	N
606	chr6_cox_hap2	2759059	2759060	rs2524067	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p21.33	HLA-C, HLA-B	rs2524067-G	0.353	1E-25				Illumina [118177]	N
606	chr6_cox_hap2	2760061	2760062	rs7383388	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6p21.33	RPL3P2	rs7383388-T	0.404081	1E-10		0.01745803	[0.012-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
606	chr6_cox_hap2	2760441	2760442	rs2853946	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	USP8P1	rs2853946-T	NR	2E-9		0.0200045	[0.014-0.026] unit decrease	Affymetrix [323123] (imputed)	N
606	chr6_cox_hap2	2760441	2760442	rs2853946	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	USP8P1	rs2853946-T	NR	5E-11		0.0201772	[0.014-0.026] unit increase	Affymetrix [321169] (imputed)	N
606	chr6_cox_hap2	2760441	2760442	rs2853946	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	119,629 East Asian ancestry individuals	NA	6p21.33	NR	rs2853946-A	0.728288	8E-12		0.03126	[0.022-0.04] SD units decrease	Affymetrix, Illumina [16286228] (imputed)	N
606	chr6_cox_hap2	2760441	2760442	rs2853946	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	White blood cell count	8,825 African American individuals, 18,251 Hispanic/Latino individuals, 543 Asian ancestry individuals, 606 Native American ancestry individuals, 383 individuals	NA	6p21.33	NR	rs2853946-?	NR	8E-7		0.0119414	[0.0072-0.0167] unit increase	Illumina [30613845] (imputed)	N
606	chr6_cox_hap2	2760441	2760442	rs2853946	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.33	USP8P1	rs2853946-A	0.6837	8E-12		0.0519	[0.037-0.067] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
606	chr6_cox_hap2	2760441	2760442	rs2853946	25096241	Keller MF	2014-08-05	Hum Mol Genet	Trans-ethnic meta-analysis of white blood cell phenotypes.	White blood cell count	16,843 Japanese ancestry individuals, 19,509 European ancestry individuals, 16,388 African American individuals	NA	6p21.33	HLA-B	rs2853946-A	0.717	8E-6	(Japanese)	0.013	[0.0071-0.0189] unit decrease	Illumina [NR] (imputed)	N
606	chr6_cox_hap2	2760441	2760442	rs2853946	25096241	Keller MF	2014-08-05	Hum Mol Genet	Trans-ethnic meta-analysis of white blood cell phenotypes.	White blood cell count	16,843 Japanese ancestry individuals, 19,509 European ancestry individuals, 16,388 African American individuals	NA	6p21.33	HLA-B	rs2853946-A	0.348	1E-8	(EA)	0.017	[0.011-0.023] unit decrease	Illumina [NR] (imputed)	N
606	chr6_cox_hap2	2760441	2760442	rs2853946	25096241	Keller MF	2014-08-05	Hum Mol Genet	Trans-ethnic meta-analysis of white blood cell phenotypes.	White blood cell count	16,843 Japanese ancestry individuals, 19,509 European ancestry individuals, 16,388 African American individuals	NA	6p21.33	HLA-B	rs2853946-?	NR	3E-14		0.0139	[0.010-0.017] unit decrease	Illumina [NR] (imputed)	N
606	chr6_cox_hap2	2760644	2760645	rs112262437	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.33	NR	rs112262437-C	0.994	2E-27	(conditional)	6.006	[5.68-6.33]	Illumina [11270530] (imputed)	N
606	chr6_cox_hap2	2760652	2760653	rs2844608	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	RPL3P2	rs2844608-T	NR	3E-19		0.0260453	[0.02-0.032] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_cox_hap2	2760652	2760653	rs2844608	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	RPL3P2	rs2844608-T	NR	2E-18		0.0254038	[0.02-0.031] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_cox_hap2	2760652	2760653	rs2844608	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4 on CD28+ CD4+ T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs2844608-T	0.45698	9E-10		0.1884	[0.13-0.25] unit increase	Illumina [17954496] (imputed)	N
606	chr6_cox_hap2	2761109	2761110	rs2853943	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	RPL3P2	rs2853943-C	NR	2E-12		0.0232178	[0.017-0.03] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_cox_hap2	2761109	2761110	rs2853943	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	RPL3P2	rs2853943-C	NR	3E-12		0.0229712	[0.017-0.029] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_cox_hap2	2761670	2761671	rs2844606	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	RPL3P2	rs2844606-G	NR	2E-9		0.0190067	[0.013-0.025] unit increase	Affymetrix [323858] (imputed)	N
606	chr6_cox_hap2	2761670	2761671	rs2844606	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	RPL3P2	rs2844606-G	NR	5E-8		0.017266	[0.011-0.023] unit increase	Affymetrix [127266] (imputed)	N
606	chr6_cox_hap2	2761670	2761671	rs2844606	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	RPL3P2	rs2844606-G	NR	1E-13		0.021298	[0.016-0.027] unit increase	Affymetrix [321169] (imputed)	N
606	chr6_cox_hap2	2761670	2761671	rs2844606	33204752	Butler-Laporte G	2020-09-24	Open Forum Infect Dis	Genetic Determinants of Antibody-Mediated Immune Responses to Infectious Diseases Agents: A Genome-Wide and HLA Association Study.	Anti-human herpes virus 6 IE1A IgG seropositivity	8,735 White British ancestry individuals	NA	6p21.33	RPL3P2	rs2844606-A	0.584	1E-8		0.1	unit decrease	NR [25472218] (imputed)	N
606	chr6_cox_hap2	2761670	2761671	rs2844606	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	6p21.33	RPL3P2	rs2844606-G	0.417187	3E-23		0.025892606	[0.021-0.031] unit increase	Affymetrix [93095623] (imputed)	N
606	chr6_cox_hap2	2761672	2761673	rs9264758	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p21.33	HLA-C	rs9264758-G	0.866	3E-7		0.082	[0.051-0.113] unit increase	Affymetrix, Illumina [7374092] (imputed)	N
606	chr6_cox_hap2	2761829	2761830	rs2844605	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	RPL3P2	rs2844605-C	NR	7E-16		0.0250208	[0.019-0.031] unit decrease	Affymetrix [323123] (imputed)	N
606	chr6_cox_hap2	2761916	2761917	rs9264759	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	93,063 East Asian ancestry individuals	NA	6p21.33		rs9264759-C	0.695944	2E-40		0.0639223	[0.055-0.073] unit decrease	Illumina [13470073] (imputed)	N
606	chr6_cox_hap2	2762467	2762468	rs2853941	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	RPL3P2	rs2853941-C	NR	1E-9		0.0174735	[0.012-0.023] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_cox_hap2	2762637	2762638	rs9264764	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	RPL3P2	rs9264764-C	NR	4E-9		0.0168291	[0.011-0.022] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_cox_hap2	2762832	2762833	rs7766089	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	RPL3P2	rs7766089-G	NR	5E-19		0.0281143	[0.022-0.034] unit increase	Affymetrix [323123] (imputed)	N
606	chr6_cox_hap2	2762832	2762833	rs7766089	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	RPL3P2	rs7766089-G	NR	2E-20		0.0271218	[0.021-0.033] unit decrease	Affymetrix [321169] (imputed)	N
606	chr6_cox_hap2	2762971	2762972	rs2853940	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gastric cancer	1,029 European ancestry cases, 475,087 European ancestry controls, 7,921 East Asian ancestry cases, 159,201 East Asian ancestry controls	NA	6p21.33		rs2853940-C	NR	8E-12		0.1087	[0.078-0.14] unit increase	Affymetrix, Illumina [25843697] (imputed)	N
606	chr6_cox_hap2	2762971	2762972	rs2853940	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	RPL3P2	rs2853940-C	NR	3E-17		0.0246751	[0.019-0.03] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_cox_hap2	2762971	2762972	rs2853940	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	RPL3P2	rs2853940-C	NR	4E-16		0.0237957	[0.018-0.03] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_cox_hap2	2763881	2763882	rs2853939	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	RPL3P2	rs2853939-T	NR	2E-28		0.033269	[0.027-0.039] unit increase	Affymetrix [323123] (imputed)	N
606	chr6_cox_hap2	2765635	2765636	rs2524054	20045101	Ferreira MA	2009-12-31	Am J Hum Genet	Quantitative trait loci for CD4:CD8 lymphocyte ratio are associated with risk of type 1 diabetes and HIV-1 immune control.	CD8-positive T-lymphocyte count	2,538 European ancestry twins from 1,089 families	988 individuals from 550 families	6p21.33	HLA-B	rs2524054-A	0.32	6E-21		0.37	[0.31-0.43] SD increase	Illumina [529721]	N
606	chr6_cox_hap2	2765635	2765636	rs2524054	20045101	Ferreira MA	2009-12-31	Am J Hum Genet	Quantitative trait loci for CD4:CD8 lymphocyte ratio are associated with risk of type 1 diabetes and HIV-1 immune control.	CD4:CD8 lymphocyte ratio	2,538 European ancestry twins from 1,089 families	988 individuals from 550 families	6p21.33	HLA-B	rs2524054-A	0.32	2E-28		0.37	[0.31-0.43] SD increase	Illumina [529721]	N
606	chr6_cox_hap2	2766164	2766165	rs12191877	26626624	Stuart PE	2015-11-28	Am J Hum Genet	Genome-wide Association Analysis of Psoriatic Arthritis and Cutaneous Psoriasis Reveals Differences in Their Genetic Architecture.	Psoriatic arthritis	1,946 European ancestry cases, 4,934 European ancestry controls	up to 2,883 European ancestry cases, up to 14,179 European ancestry controls		HLA-C, HLA-B, HLA, MHC	rs12191877-T	NR	2E-99		2.416	NR	Illumina [11532644] (imputed)	N
606	chr6_cox_hap2	2766164	2766165	rs12191877	20953188	Ellinghaus E	2010-10-17	Nat Genet	Genome-wide association study identifies a psoriasis susceptibility locus at TRAF3IP2.	Psoriasis	472 European ancestry cases, 1,146 European ancestry controls	2,668, European ancestry cases, 762 French Canadian founder population cases, 2,585 cases, 3,485 European ancestry controls, 994 French Canadian founder population controls, 2,412 controls		HLA-C	rs12191877-?	NR	4E-32		2.79	[2.35-3.33]	Illumina [2339118] (imputed)	N
606	chr6_cox_hap2	2766164	2766165	rs12191877	19169254	Nair RP	2009-01-25	Nat Genet	Genome-wide scan reveals association of psoriasis with IL-23 and NF-kappaB pathways.	Psoriasis	1,359 European ancestry cases, 1,400 European ancestry controls	5,048 European ancestry cases, 5,041 European ancestry controls		HLA-C	rs12191877-T	0.15	1E-100		2.64	[NR]	Perlegen [~ 2500000] (imputed)	N
606	chr6_cox_hap2	2767327	2767328	rs2853933	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	WASF5P	rs2853933-T	NR	5E-17		0.0264491	[0.02-0.033] unit decrease	Affymetrix [323858] (imputed)	N
606	chr6_cox_hap2	2767327	2767328	rs2853933	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	WASF5P	rs2853933-T	NR	5E-15		0.0246973	[0.019-0.031] unit decrease	Affymetrix [127266] (imputed)	N
606	chr6_cox_hap2	2768247	2768248	rs13214872	33385400	Patrick MT	2020-12-29	J Invest Dermatol	Causal relationship and shared genetic loci between psoriasis and type 2 diabetes through trans-disease meta-analysis.	Psoriasis or type 2 diabetes (trans-disease meta-analysis)	11,024 European ancestry psoriasis cases, 74,124 European ancestry diabetes cases, 840,342 European ancestry controls	NA		NR	rs13214872-G	NR	2E-302		1.67	NR	NR [8016731] (imputed)	N
606	chr6_cox_hap2	2768681	2768682	rs114598080	32421744	Gzara C	2020-05-18	PLoS Pathog	Family-based genome-wide association study of leprosy in Vietnam.	Leprosy	1,749 Vietnamese ancestry cases	1,181 Vietnamese ancestry cases, 688 Vietnamese ancestry controls	6p21.33	HLA-C	rs114598080-A	0.1	9E-13		1.47	[1.46-1.48]	Illumina [5607170] (imputed)	N
606	chr6_cox_hap2	2770750	2770751	rs2853928	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for VLDL particles	115,082 European ancestry individuals	NA	6p21.33		rs2853928-A	0.298678	8E-11		0.0272348	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
606	chr6_cox_hap2	2770750	2770751	rs2853928	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	HLA-C, WASF5P, XXbac-BPG248L24.13, HLA-B, XXbac-BPG248L24.12, USP8P1, RPL3P2, XXbac-BPG248L24.10, MIR6891	rs2853928-A	0.2253521	3E-12	(EA, Granzyme A)	0.3627	[0.26-0.46] unit decrease	Affymetrix [509946]	N
606	chr6_cox_hap2	2771632	2771633	rs2844594	34785669	Grosche S	2021-11-16	Nat Commun	Rare variant analysis in eczema identifies exonic variants in DUSP1, NOTCH4 and SLC9A4.	Eczema	20,016 European ancestry cases, 380,433 European ancestry controls	NA	6p21.33		rs2844594-A	0.1766	3E-14		1.12		Affymetrix, Illumina [9397031] (imputed)	N
606	chr6_cox_hap2	2771632	2771633	rs2844594	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HVEM on naive CD8+ T cell	1,247 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs2844594-A	0.38517	2E-10		0.276	[0.19-0.36] unit decrease	Illumina [16410374] (imputed)	N
606	chr6_cox_hap2	2772076	2772077	rs9468925	20526339	Quan C	2010-06-06	Nat Genet	Genome-wide association study for vitiligo identifies susceptibility loci at 6q27 and the MHC.	Vitiligo	1,117 Han Chinese ancestry cases, 1,429 Han Chinese ancestry controls	6,623 East Asian ancestry cases, 10,740 East Asian ancestry controls	6p21.33	HLA	rs9468925-?	0.617	2E-33		1.35	[1.28-1.41]	Illumina [493909]	N
606	chr6_cox_hap2	2772814	2772815	rs2524163	27286809	Ligthart S	2016-06-10	BMC Genomics	Bivariate genome-wide association study identifies novel pleiotropic loci for lipids and inflammation.	C-reactive protein levels or triglyceride levels (pleiotropy)	65,000 individuals (C-reactive protein), 96,598 individuals (triglycerides)	NA	6p21.33	HLA-C	rs2524163-T	NR	8E-10				NR [25015711] (imputed)	N
606	chr6_cox_hap2	2773363	2773364	rs115464798	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	6p21.33	WASF5P	rs115464798-A	0.056192	5E-21		0.049840536	[0.039-0.06] unit decrease	Affymetrix [93095623] (imputed)	N
606	chr6_cox_hap2	2776016	2776017	rs2524147	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs2524147-G	0.814	8E-65				Affymetrix [10369434] (imputed)	N
606	chr6_cox_hap2	2776745	2776746	rs2524143	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs2524143-C	0.736	2E-52	(Killer cell immunoglobulin-like receptor 2DS2, KIR2DS2.10428.1.3)	0.43	[0.37-0.49] unit decrease	Affymetrix [10572788] (imputed)	N
606	chr6_cox_hap2	2776757	2776758	rs2524142	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	6p21.33		rs2524142-C	0.299755	1E-8		0.0256476	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
606	chr6_cox_hap2	2776757	2776758	rs2524142	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	6p21.33		rs2524142-C	0.299755	8E-10		0.02748	[0.019-0.036] unit decrease	NR [11722792] (imputed)	N
606	chr6_cox_hap2	2776757	2776758	rs2524142	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs2524142-G	0.734	3E-22	(cAMP-specific 3',5'-cyclic phosphodiesterase 4D, PDE4D.5255.22.3)	0.28	[0.22-0.34] unit increase	Affymetrix [10572788] (imputed)	N
606	chr6_cox_hap2	2776986	2776987	rs2894207	27436580	Cui Q	2016-07-19	Hum Mol Genet	An extended genome-wide association study identifies novel susceptibility loci for nasopharyngeal carcinoma.	Nasopharyngeal carcinoma	1,583 Southern Chinese ancestry cases, 2,979 Southern Chinese ancestry controls	5,463 Southern Chinese ancestry cases, 5,591 Southern Chinese ancestry controls	6p21.33	NR	rs2894207-?	0.84	2E-19		1.96	[1.69-2.27]	Illumina [463250]	N
606	chr6_cox_hap2	2776986	2776987	rs2894207	20512145	Bei JX	2010-05-30	Nat Genet	A genome-wide association study of nasopharyngeal carcinoma identifies three new susceptibility loci.	Nasopharyngeal carcinoma	1,583 Chinese ancestry cases, 1,894 Chinese ancestry controls	3,507 Chinese ancestry cases, 3,063 Chinese ancestry controls, 284  Chinese ancestry trios	6p21.33	HLA-C, HLA-B	rs2894207-?	0.82	3E-33		1.64	[1.52-1.75]	Illumina [464328]	N
606	chr6_cox_hap2	2777036	2777037	rs114583506	33483693	Clements CC	2021-01-22	Mol Psychiatry	Genome-wide association study of patients with a severe major depressive episode treated with electroconvulsive therapy.	Major depressive episode treated with electroconvulsive therapy	2,725 European ancestry cases, 3,290 European ancestry controls	NA	6p21.33	HLA-C	rs114583506-?	NR	4E-8		0.5992	[0.42-0.78]	Illumina [NR] (imputed)	N
606	chr6_cox_hap2	2777036	2777037	rs114583506	33483693	Clements CC	2021-01-22	Mol Psychiatry	Genome-wide association study of patients with a severe major depressive episode treated with electroconvulsive therapy.	Major depressive disorder and major depressive episode treated with electroconvulsive therapy	1,796 European ancestry cases, 3,290 European ancestry controls	NA	6p21.33	HLA-C	rs114583506-?	NR	1E-7		0.5845	[0.39-0.78]	Illumina [NR] (imputed)	N
606	chr6_cox_hap2	2777368	2777369	rs2524139	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	XXbac-BPG248L24.13	rs2524139-C	0.734	2E-52	(Killer cell immunoglobulin-like receptor 2DS2, KIR2DS2.10428.1.3)	0.43	[0.37-0.49] unit decrease	Affymetrix [10572788] (imputed)	N
606	chr6_cox_hap2	2777627	2777628	rs9380237	32558222	Okamura K	2020-06-18	Pigment Cell Melanoma Res	Genome-wide association study identifies CDH13 as a susceptibility gene for rhododendrol-induced leukoderma.	Leukoderma in response to rhododendrol	147 Japanese ancestry cases, 112 Japanese ancestry controls	NA	6p21.33	HLA-B, HLA-C	rs9380237-?	NR	8E-6		3.5714285	[1.96-6.25]	Illumina [1057565]	N
606	chr6_cox_hap2	2777696	2777697	rs3094682	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	6p21.33	NR	rs3094682-C	0.8056	2E-23		0.0598	[0.048-0.072] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
606	chr6_cox_hap2	2778358	2778359	rs55745121	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	6p21.33	XXbac-BPG248L24.13	rs55745121-C	0.00771999999999995	2E-12		0.103537746	[0.075-0.132] unit increase	Affymetrix [93095623] (imputed)	N
606	chr6_cox_hap2	2778370	2778371	rs2524129	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2524129-C	0.298408	4E-18		0.0377033	[0.029-0.046] unit decrease	NR [11722792] (imputed)	N
606	chr6_cox_hap2	2778370	2778371	rs2524129	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small LDL	115,082 European ancestry individuals	NA	6p21.33		rs2524129-C	0.298408	2E-16		0.0359658	[0.027-0.045] unit decrease	NR [11722792] (imputed)	N
606	chr6_cox_hap2	2778370	2778371	rs2524129	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2524129-C	0.298408	5E-15		0.0341259	[0.026-0.043] unit decrease	NR [11722792] (imputed)	N
606	chr6_cox_hap2	2778370	2778371	rs2524129	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium LDL	115,082 European ancestry individuals	NA	6p21.33		rs2524129-C	0.298408	5E-17		0.036788	[0.028-0.045] unit decrease	NR [11722792] (imputed)	N
606	chr6_cox_hap2	2778370	2778371	rs2524129	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2524129-C	0.298408	3E-14		0.0327886	[0.024-0.041] unit decrease	NR [11722792] (imputed)	N
606	chr6_cox_hap2	2778370	2778371	rs2524129	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total triglycerides levels	115,082 European ancestry individuals	NA	6p21.33		rs2524129-C	0.298408	3E-15		0.0342705	[0.026-0.043] unit decrease	NR [11722792] (imputed)	N
606	chr6_cox_hap2	2778370	2778371	rs2524129	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2524129-C	0.298408	2E-11		0.0290519	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
606	chr6_cox_hap2	2778497	2778498	rs2246954	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.13	rs2246954-A	NR	2E-8		0.0159083	[0.01-0.021] unit decrease	Affymetrix [321114] (imputed)	N
606	chr6_cox_hap2	2778497	2778498	rs2246954	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.13	rs2246954-A	NR	1E-9		0.0195845	[0.013-0.026] unit increase	Affymetrix [323858] (imputed)	N
606	chr6_cox_hap2	2778725	2778726	rs2247056	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-3 fatty acid levels	115,006 European ancestry individuals	NA	6p21.33		rs2247056-T	0.296693	2E-16		0.0356403	[0.027-0.044] unit decrease	NR [11722792] (imputed)	N
606	chr6_cox_hap2	2778725	2778726	rs2247056	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2247056-T	0.296684	6E-12		0.0298649	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
606	chr6_cox_hap2	2778725	2778726	rs2247056	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.33	NR	rs2247056-T	NR	2E-14		0.034	unit decrease	Affymetrix [at least 7091467] (imputed)	N
606	chr6_cox_hap2	2778725	2778726	rs2247056	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.33	NR	rs2247056-T	0.249	1E-12	(EA)	0.034	unit decrease	Affymetrix [at least 7091467] (imputed)	N
606	chr6_cox_hap2	2778725	2778726	rs2247056	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.33	NR	rs2247056-T	NR	2E-18		0.043	unit decrease	Affymetrix [at least 7091467] (imputed)	N
606	chr6_cox_hap2	2778725	2778726	rs2247056	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.33	NR	rs2247056-T	0.249	2E-17	(EA)	0.045	unit decrease	Affymetrix [at least 7091467] (imputed)	N
606	chr6_cox_hap2	2778725	2778726	rs2247056	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.33	NR	rs2247056-T	NR	2E-8		0.028	unit decrease	Affymetrix [at least 7091467] (imputed)	N
606	chr6_cox_hap2	2778725	2778726	rs2247056	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.33	NR	rs2247056-T	0.249	6E-8	(EA)	0.029	unit decrease	Affymetrix [at least 7091467] (imputed)	N
606	chr6_cox_hap2	2778725	2778726	rs2247056	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	6p21.33	HLA-C, HLA-B	rs2247056-T	0.27	4E-12		1.18	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
606	chr6_cox_hap2	2778725	2778726	rs2247056	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	Triglycerides	96,598 European ancestry individuals	NA	6p21.33	HLA	rs2247056-T	0.25	2E-15		2.99	[2.17-3.81] mg/dL decrease	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
606	chr6_cox_hap2	2778972	2778973	rs2853923	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.13	rs2853923-G	NR	4E-8		0.0175506	[0.011-0.024] unit decrease	Affymetrix [323858] (imputed)	N
606	chr6_cox_hap2	2779276	2779277	rs17192526	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.13	rs17192526-C	NR	1E-9		0.0195758	[0.013-0.026] unit increase	Affymetrix [323858] (imputed)	N
606	chr6_cox_hap2	2779276	2779277	rs17192526	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.13	rs17192526-C	NR	8E-9		0.0185107	[0.012-0.025] unit increase	Affymetrix [127266] (imputed)	N
606	chr6_cox_hap2	2779276	2779277	rs17192526	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.13	rs17192526-C	NR	2E-18		0.0275913	[0.021-0.034] unit decrease	Affymetrix [323123] (imputed)	N
606	chr6_cox_hap2	2779325	2779326	rs4406273	26626624	Stuart PE	2015-11-28	Am J Hum Genet	Genome-wide Association Analysis of Psoriatic Arthritis and Cutaneous Psoriasis Reveals Differences in Their Genetic Architecture.	Psoriasis vulgaris	4,007 European ancestry cases, 4,934 European ancestry controls	up to 9,075 European ancestry cases, up to European ancestry 12,726 controls	6p21.33	HLA-B, HLA-C	rs4406273-A	NR	2E-312		3.38	NR	Illumina [up to 11532644] (imputed)	N
606	chr6_cox_hap2	2779325	2779326	rs4406273	23143594	Tsoi LC	2012-12-01	Nat Genet	Identification of 15 new psoriasis susceptibility loci highlights the role of innate immunity.	Psoriasis	10,588 European ancestry cases, 22,806 European ancestry controls	NA	6p21.33	HLA-B, HLA-C	rs4406273-A	0.092	5E-723		4.32		Illumina [111236] (imputed)	N
606	chr6_cox_hap2	2779352	2779353	rs2524095	31879980	German CA	2019-12-26	Genet Epidemiol	Ordered multinomial regression for genetic association analysis of ordinal phenotypes at Biobank scale.	Hypertension	30,822 British ancestry normal blood pressure individuals, 25,242 British ancestry elevated blood pressure individuals, 50,461 British ancestry stage 1 hypertension individuals, 75,286 British ancestry stage 2 hypertension individuals, 3,754 British ancestry hypertension crisis individuals	NA	6p21.33	LINC02571	rs2524095-?	NR	1E-9		0.03838402	NR unit increase	Affymetrix [464137]	N
606	chr6_cox_hap2	2781171	2781172	rs28367631	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	WASF5P, HLA-C, XXbac-BPG248L24.10, USP8P1, RPL3P2, XXbac-BPG248L24.13	rs28367631-T	0.3457286	1E-15	(EA, MHC class I polypeptide-related sequence A)	0.3635	[0.28-0.45] unit decrease	Affymetrix [509946]	N
606	chr6_cox_hap2	2781349	2781350	rs2524046	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.13	rs2524046-T	NR	1E-10		0.0223645	[0.016-0.029] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_cox_hap2	2781350	2781351	rs2524045	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.13	rs2524045-G	NR	7E-11		0.022607	[0.016-0.029] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_cox_hap2	2781877	2781878	rs28367657	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.13	rs28367657-A	NR	1E-12		0.0243391	[0.018-0.031] unit decrease	Affymetrix [323123] (imputed)	N
606	chr6_cox_hap2	2782408	2782409	rs9366778	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR		HLA-C	rs9366778-G	0.626619	3E-11		0.018043	[0.013-0.023] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
606	chr6_cox_hap2	2782721	2782722	rs2844592	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gastric polyp	6,155 European ancestry cases, 341,871 European ancestry controls, 1,337 East Asian ancestry cases, 158,249 East Asian ancestry controls	NA	6p21.33		rs2844592-G	NR	4E-8		0.0998	[0.064-0.135] unit increase	Affymetrix, Illumina [20456140] (imputed)	N
606	chr6_cox_hap2	2782928	2782929	rs114985235	26891255	Jung ES	2016-02-18	Inflamm Bowel Dis	HLA-C*01 is a Risk Factor for Crohn's Disease.	Crohn's disease	275 Korean ancestry cases, 2,369 Korean ancestry controls	242 Korean ancestry cases, 1,066 Korean ancestry controls	6p21.33	HLA-B, HLA-C	rs114985235-C	0.12	9E-23		2.25	[1.91-2.66]	Affymetrix [3387207] (imputed)	N
606	chr6_cox_hap2	2783181	2783182	rs12211087	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Depression	at least 5,919 European ancestry cases, at least 130,691 European ancestry controls	634,037 European ancestry cases, 1,308,690 European ancestry controls	6p21.33	XXbac, BPG248L24.13	rs12211087-T	0.09841	2E-6		0.018283794	[0.0097-0.0269] unit decrease	NR [9417325] (imputed)	N
606	chr6_cox_hap2	2783419	2783420	rs9468939	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.13	rs9468939-C	NR	6E-9		0.0177651	[0.012-0.024] unit decrease	Affymetrix [321016] (imputed)	N
606	chr6_cox_hap2	2783592	2783593	rs9264798	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p21.33		rs9264798-C	0.826	9E-36				Affymetrix [10369434] (imputed)	N
606	chr6_cox_hap2	2783640	2783641	rs9264801	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.33		rs9264801-C	0.826	5E-63				Affymetrix [10369434] (imputed)	N
606	chr6_cox_hap2	2784033	2784034	rs142628781	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.33		rs142628781-T	0.070905	3E-14		1.080437	[1.06-1.1]	Affymetrix, Illumina [9851866] (imputed)	N
606	chr6_cox_hap2	2784311	2784312	rs9264845	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs9264845-C	0.258	3E-16	(MHC class I polypeptide-related sequence B, MICB.5102.55.3)	0.26	[0.2-0.32] unit decrease	Affymetrix [10572788] (imputed)	N
606	chr6_cox_hap2	2784802	2784803	rs7750963	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large VLDL	115,082 European ancestry individuals	NA	6p21.33		rs7750963-A	0.298149	7E-13		0.0308157	[0.022-0.039] unit decrease	NR [11722792] (imputed)	N
606	chr6_cox_hap2	2784802	2784803	rs7750963	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large VLDL	115,082 European ancestry individuals	NA	6p21.33		rs7750963-A	0.298149	3E-12		0.0302555	[0.022-0.039] unit decrease	NR [11722792] (imputed)	N
606	chr6_cox_hap2	2784802	2784803	rs7750963	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6p21.33		rs7750963-A	0.298149	7E-9		0.0250346	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
606	chr6_cox_hap2	2784802	2784803	rs7750963	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs7750963-G	0.882	8E-43	(Killer cell immunoglobulin-like receptor 2DS2, KIR2DS2.10428.1.3)	0.59	[0.51-0.67] unit decrease	Affymetrix [10572788] (imputed)	N
606	chr6_cox_hap2	2784951	2784952	rs9461688	18464913	Melzer D	2008-05-09	PLoS Genet	A genome-wide association study identifies protein quantitative trait loci (pQTLs).	Protein quantitative trait loci	1,200 European ancestry individuals	up to 4,590 European ancestry individuals	6p21.33	HLA-C	rs9461688-?	0.31	4E-6	(IL18)			Illumina [496032]	N
606	chr6_cox_hap2	2784970	2784971	rs9264875	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Lectin-like oxidized LDL receptor 1 levels	21,758 European ancestry individuals	9,173 individuals	6p21.33		rs9264875-C	0.12	2E-9		0.092	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
606	chr6_cox_hap2	2785436	2785437	rs556990455	32534018	Liu X	2020-06-10	Brain Behav Immun	Genetic factors underlying the bidirectional relationship between autoimmune and mental disorders - findings from a Danish population-based study.	Autoimmune traits	1,383 Danish ancestry cases, 62,656 Danish ancestry controls	NA	6p21.33	NR	rs556990455-T	0.016	7E-11		2.23	[1.79-2.77]	NR [7721839] (imputed)	N
606	chr6_cox_hap2	2785496	2785497	rs6457374	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs6457374-T	0.753	2E-34	(MHC class I polypeptide-related sequence B, MICB.5102.55.3)	0.39	[0.33-0.45] unit increase	Affymetrix [10572788] (imputed)	N
606	chr6_cox_hap2	2785496	2785497	rs6457374	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	6p21.33	HLA-C	rs6457374-T	0.73	8E-35		0.041	[0.035-0.047] unit decrease	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
606	chr6_cox_hap2	2785556	2785557	rs9368677	23042114	Hirota T	2012-10-07	Nat Genet	Genome-wide association study identifies eight new susceptibility loci for atopic dermatitis in the Japanese population.	Atopic dermatitis	1,472 Japanese ancestry cases, 7,971 Japanese ancestry controls	1,856 Japanese ancestry cases, 7,021 Japanese ancestry controls	6p21.33	HLA-C	rs9368677-G	0.798	1E-17		1.36	[1.27-1.46]	Illumina [606164]	N
606	chr6_cox_hap2	2785788	2785789	rs9264904	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.33		rs9264904-G	0.739	4E-158				Affymetrix [10369434] (imputed)	N
606	chr6_cox_hap2	2785788	2785789	rs9264904	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.10	rs9264904-A	NR	3E-11		0.0214122	[0.015-0.028] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_cox_hap2	2785788	2785789	rs9264904	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.10	rs9264904-A	NR	8E-11		0.0209999	[0.015-0.027] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_cox_hap2	2785788	2785789	rs9264904	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.10	rs9264904-A	NR	8E-9		0.0188102	[0.012-0.025] unit increase	Affymetrix [321169] (imputed)	N
606	chr6_cox_hap2	2785788	2785789	rs9264904	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	6p21.33	XXbac-BPG248L24.13	rs9264904-A	0.260825	6E-13		0.019344117	[0.014-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
606	chr6_cox_hap2	2785788	2785789	rs9264904	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	6p21.33	NR	rs9264904-A	0.262119	3E-387		0.091059	[0.087-0.095] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
606	chr6_cox_hap2	2786732	2786733	rs2508008	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p21.33	NR	rs2508008-G	0.119	3E-6	(IFNAR2_of_CD8p_T)			Illumina [5084123] (imputed)	N
606	chr6_cox_hap2	2786980	2786981	rs3873386	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.10	rs3873386-C	NR	9E-11		0.0189406	[0.013-0.025] unit decrease	Affymetrix [321016] (imputed)	N
606	chr6_cox_hap2	2787262	2787263	rs1634761	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.10	rs1634761-T	NR	6E-12		0.0193034	[0.014-0.025] unit decrease	Affymetrix [321016] (imputed)	N
606	chr6_cox_hap2	2787262	2787263	rs1634761	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.10	rs1634761-T	NR	1E-13		0.0211552	[0.016-0.027] unit increase	Affymetrix [321169] (imputed)	N
606	chr6_cox_hap2	2787533	2787534	rs9264941	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	6p21.33	XXbac-BPG248L24.13	rs9264941-A	0.167	6E-44		0.066809	[0.057-0.076] unit increase	Affymetrix [~ 2500000] (imputed)	N
606	chr6_cox_hap2	2787615	2787616	rs9264942	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	6p21.33	NR	rs9264942-?	NR	5E-25	(EA)			Affymetrix, Illumina [~ 9000000] (imputed)	N
606	chr6_cox_hap2	2787615	2787616	rs9264942	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Crohn's disease	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls	6p21.33	PSORS1C1, NFKBIL1, HLA-C, MICB	rs9264942-C	0.378	5E-28		1.145	[1.107-1.184]	Affymetrix, Illumina [1230000] (imputed)	N
606	chr6_cox_hap2	2787615	2787616	rs9264942	21051598	Pereyra F	2010-11-04	Science	The major genetic determinants of HIV-1 control affect HLA class I peptide presentation.	HIV-1 control	516 European cases, 1,196 European controls, 341 African American cases, 892 African American controls, 117 Hispanic cases, 560 Hispanic controls	NA	6p21.33	HLA-C	rs9264942-C	0.34	3E-35	(EA)	2.9	[NR]	Illumina [1384048] (imputed)	N
606	chr6_cox_hap2	2787615	2787616	rs9264942	20041166	Fellay J	2009-12-24	PLoS Genet	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	6p21.33	HLA-C	rs9264942-C	0.412	6E-32	(setpoint)	5.3	[NR] % increase	Illumina [NR]	N
606	chr6_cox_hap2	2787615	2787616	rs9264942	20041166	Fellay J	2009-12-24	PLoS Genet	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	6p21.33	HLA-C	rs9264942-?	NR	6E-12	(progression)			Illumina [NR]	N
606	chr6_cox_hap2	2787790	2787791	rs10484554	33385400	Patrick MT	2020-12-29	J Invest Dermatol	Causal relationship and shared genetic loci between psoriasis and type 2 diabetes through trans-disease meta-analysis.	Psoriasis or type 2 diabetes (trans-disease meta-analysis)(opposite effect)	11,024 European ancestry psoriasis cases, 74,124 European ancestry diabetes cases, 840,342 European ancestry controls	NA	6p21.33	NR	rs10484554-T		2E-302		1.67		NR [8016731] (imputed)	N
606	chr6_cox_hap2	2787790	2787791	rs10484554	26626624	Stuart PE	2015-11-28	Am J Hum Genet	Genome-wide Association Analysis of Psoriatic Arthritis and Cutaneous Psoriasis Reveals Differences in Their Genetic Architecture.	Cutaneous psoriasis	1,363 European ancestry cases, 4,934 European ancestry controls	up to 2,969 European ancestry cases, up to European ancestry 14,384 controls	6p21.33	HLA, HLA-C	rs10484554-T	NR	4E-207		3.304	NR	Illumina [11532644] (imputed)	N
606	chr6_cox_hap2	2787790	2787791	rs10484554	20953190	Strange A	2010-10-17	Nat Genet	A genome-wide association study identifies new psoriasis susceptibility loci and an interaction between HLA-C and ERAP1.	Psoriasis	2,178 European ancestry cases, 5,175 European ancestry controls	3,174 European ancestry cases, 5,464 European ancestry controls	6p21.33	HLA-C	rs10484554-?	NR	4E-214		4.66	[4.23-5.13]	Illumina [535475]	N
606	chr6_cox_hap2	2787790	2787791	rs10484554	19115949	Limou S	2009-01-01	J Infect Dis	Genomewide association study of an AIDS-nonprogression cohort emphasizes the role played by HLA genes (ANRS Genomewide Association Study 02).	AIDS progression	275 European ancestry seropositive non-progressors, 86 European ancestry seropositive rapid progressors, 1,352 European ancestry seronegative controls	(see Fellay 2007)	6p21.33	HLA-C	rs10484554-T	0.13	6E-8				Illumina [291119]	N
606	chr6_cox_hap2	2787790	2787791	rs10484554	18369459	Liu Y	2008-04-04	PLoS Genet	A genome-wide association study of psoriasis and psoriatic arthritis identifies new disease loci.	Psoriasis	218 European ancestry cases, 519 European ancestry controls	1,153 European ancestry cases, 1,217 European ancestry controls	6p21.33	HLA-C	rs10484554-T	0.15	2E-39		2.8	[2.40-3.30]	Illumina [305983]	N
606	chr6_cox_hap2	2787821	2787822	rs9348865	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.10	rs9348865-G	NR	4E-10		0.0204625	[0.014-0.027] unit increase	Affymetrix [323858] (imputed)	N
606	chr6_cox_hap2	2787821	2787822	rs9348865	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.10	rs9348865-G	NR	3E-9		0.0194694	[0.013-0.026] unit increase	Affymetrix [127266] (imputed)	N
606	chr6_cox_hap2	2787821	2787822	rs9348865	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6p21.33	XXbac-BPG248L24.10	rs9348865-G	0.351828	2E-14		0.024740536	[0.018-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
606	chr6_cox_hap2	2787862	2787863	rs9264945	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	6p21.33	XXbac-BPG248L24.10	rs9264945-A	0.133478	2E-29		0.0345332	[0.028-0.041] unit increase	Affymetrix [93095623] (imputed)	N
606	chr6_cox_hap2	2787928	2787929	rs3094691	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.10	rs3094691-A	NR	1E-9		0.0192715	[0.013-0.025] unit increase	Affymetrix [323858] (imputed)	N
606	chr6_cox_hap2	2787928	2787929	rs3094691	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.10	rs3094691-A	NR	2E-8		0.0178577	[0.012-0.024] unit increase	Affymetrix [127266] (imputed)	N
606	chr6_cox_hap2	2787928	2787929	rs3094691	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.10	rs3094691-A	NR	4E-15		0.0225202	[0.017-0.028] unit increase	Affymetrix [321169] (imputed)	N
606	chr6_cox_hap2	2787987	2787988	rs3132479	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.10	rs3132479-G	NR	2E-12		0.019918	[0.014-0.025] unit decrease	Affymetrix [321016] (imputed)	N
606	chr6_cox_hap2	2787987	2787988	rs3132479	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.10	rs3132479-G	NR	3E-14		0.0234978	[0.017-0.03] unit decrease	Affymetrix [323123] (imputed)	N
606	chr6_cox_hap2	2787987	2787988	rs3132479	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	6p21.33	XXbac-BPG248L24.10	rs3132479-A	0.5388	2E-7		0.0369	[0.023-0.051] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
606	chr6_cox_hap2	2787987	2787988	rs3132479	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Perceived unattractiveness to mosquitoes	16,576 European ancestry individuals	NA	6p21.33	HLA-C, MICA	rs3132479-G	0.466	6E-7		0.11555	[0.07-0.161] unit decrease	Illumina [7433384] (imputed)	N
606	chr6_cox_hap2	2788029	2788029	rs540653847	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6p21.33	XXbac-BPG248L24.10	rs540653847-GC	0.00672899999999999	3E-18		0.12216329	[0.095-0.15] unit increase	Affymetrix [93095623] (imputed)	N
606	chr6_cox_hap2	2788029	2788029	rs540653847	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	6p21.33	XXbac-BPG248L24.10	rs540653847-GC	0.0064	8E-9		0.1328338	[0.088-0.178] unit increase	Affymetrix [~ 2500000] (imputed)	N
606	chr6_cox_hap2	2788029	2788029	rs540653847	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	6p21.33	XXbac-BPG248L24.10	rs540653847-GC	0.0064	6E-10		0.1418412	[0.097-0.187] unit increase	Affymetrix [~ 2500000] (imputed)	N
606	chr6_cox_hap2	2788054	2788054	rs5875308	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.33	XXbac-BPG248L24.10	rs5875308-CA	0.2653	7E-6		0.0365	[0.021-0.052] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
606	chr6_cox_hap2	2788901	2788902	rs3873387	29532581	Hallfors J	2018-03-13	Addict Biol	Genome-wide association study in Finnish twins highlights the connection between nicotine addiction and neurotrophin signaling pathway.	Smoking behaviour (maximum cigarettes in a 24 hour period)	1,711 Finnish ancestry ever smoker individuals from up to 739 families	NA	6p21.33	NR	rs3873387-A	0.24743	1E-6		2.706126	[1.61-3.80] unit decrease	Illumina [9469131] (imputed)	N
606	chr6_cox_hap2	2789065	2789066	rs3873388	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.10	rs3873388-G	NR	8E-10		0.0213529	[0.015-0.028] unit decrease	Affymetrix [323123] (imputed)	N
606	chr6_cox_hap2	2789552	2789553	rs1634794	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.33	Intergenic	rs1634794-T	NR	7E-10	(women)	0.0287016	[0.02-0.038] unit decrease	Illumina [13520550] (imputed)	N
606	chr6_cox_hap2	2789673	2789674	rs9264962	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.33	Intergenic	rs9264962-G	NR	8E-13		0.0264842	[0.019-0.034] unit increase	Illumina [13520550] (imputed)	N
606	chr6_cox_hap2	2789685	2789686	rs1005599	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small HDL	115,082 European ancestry individuals	NA	6p21.33		rs1005599-G	0.289198	3E-16		0.0361878	[0.028-0.045] unit decrease	NR [11722792] (imputed)	N
606	chr6_cox_hap2	2789685	2789686	rs1005599	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium HDL	115,082 European ancestry individuals	NA	6p21.33		rs1005599-G	0.289198	5E-16		0.0364668	[0.028-0.045] unit decrease	NR [11722792] (imputed)	N
606	chr6_cox_hap2	2789685	2789686	rs1005599	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in HDL	115,082 European ancestry individuals	NA	6p21.33		rs1005599-G	0.289198	2E-15		0.0354759	[0.027-0.044] unit decrease	NR [11722792] (imputed)	N
606	chr6_cox_hap2	2789685	2789686	rs1005599	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small HDL	115,082 European ancestry individuals	NA	6p21.33		rs1005599-G	0.289198	1E-19		0.0413294	[0.032-0.05] unit decrease	NR [11722792] (imputed)	N
606	chr6_cox_hap2	2789685	2789686	rs1005599	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total fatty acid levels	115,006 European ancestry individuals	NA	6p21.33		rs1005599-G	0.289208	7E-21		0.0423272	[0.033-0.051] unit decrease	NR [11722792] (imputed)	N
606	chr6_cox_hap2	2789685	2789686	rs1005599	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Saturated fatty acid levels	115,006 European ancestry individuals	NA	6p21.33		rs1005599-G	0.289208	7E-16		0.0364401	[0.028-0.045] unit decrease	NR [11722792] (imputed)	N
606	chr6_cox_hap2	2789685	2789686	rs1005599	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small HDL	115,082 European ancestry individuals	NA	6p21.33		rs1005599-G	0.289198	8E-20		0.0413457	[0.032-0.05] unit decrease	NR [11722792] (imputed)	N
606	chr6_cox_hap2	2789685	2789686	rs1005599	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Monounsaturated fatty acid levels	115,006 European ancestry individuals	NA	6p21.33		rs1005599-G	0.289208	4E-19		0.040361	[0.032-0.049] unit decrease	NR [11722792] (imputed)	N
606	chr6_cox_hap2	2789685	2789686	rs1005599	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycoprotein acetyls levels	115,082 European ancestry individuals	NA	6p21.33		rs1005599-G	0.289198	4E-32		0.0533982	[0.045-0.062] unit decrease	NR [11722792] (imputed)	N
606	chr6_cox_hap2	2790015	2790016	rs1634791	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total free cholesterol levels	115,082 European ancestry individuals	NA	6p21.33		rs1634791-A	0.450407	2E-10		0.0263105	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
606	chr6_cox_hap2	2790015	2790016	rs1634791	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total esterified cholesterol levels	115,082 European ancestry individuals	NA	6p21.33		rs1634791-A	0.450407	6E-11		0.0267294	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
606	chr6_cox_hap2	2790015	2790016	rs1634791	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol levels	115,082 European ancestry individuals	NA	6p21.33		rs1634791-A	0.450407	7E-11		0.0267605	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
606	chr6_cox_hap2	2790015	2790016	rs1634791	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Sphingomyelin levels	115,006 European ancestry individuals	NA	6p21.33		rs1634791-A	0.450416	2E-11		0.0265776	[0.019-0.034] unit decrease	NR [11722792] (imputed)	N
606	chr6_cox_hap2	2790015	2790016	rs1634791	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in LDL	115,082 European ancestry individuals	NA	6p21.33		rs1634791-A	0.450407	7E-10		0.0260256	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
606	chr6_cox_hap2	2790015	2790016	rs1634791	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	6p21.33	NR	rs1634791-A	0.455909	8E-23		0.011832	[0.0093-0.0143] unit increase	Affymetrix [16585854] (imputed)	N
606	chr6_cox_hap2	2790015	2790016	rs1634791	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	6p21.33	NR	rs1634791-A	0.455909	1E-12		0.0102161	[0.0074-0.0131] unit increase	Affymetrix [16585866] (imputed)	N
606	chr6_cox_hap2	2793454	2793455	rs117298325	30498034	Terao C	2018-11-29	Proc Natl Acad Sci U S A	Genetic determinants and an epistasis of LILRA3 and HLA-B*52 in Takayasu arteritis.	Takayasu arteritis	411 Japanese ancestry cases, 2,158 Japanese ancestry controls	219 Japanese ancestry cases, 3,770 Japanese ancestry controls	6p21.33	HLA-B	rs117298325-C	NR	4E-34				Illumina [5878075] (imputed)	N
606	chr6_cox_hap2	2796840	2796841	rs1634783	31738830	McGraw KL	2019-11-01	Blood Adv	Non-del(5q) myelodysplastic syndromes-associated loci detected by SNP-array genome-wide association meta-analysis.	Non-del(5q) myelodysplastic syndromes	907 European ancestry cases, 5,605 European ancestry controls	NA	6p21.33	intergenic	rs1634783-G	0.5	8E-7		1.3157895	[1.19-1.49]	Affymetrix [7515136] (imputed)	N
606	chr6_cox_hap2	2797302	2797303	rs1634738	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs1634738-A	0.276	1E-14	(alpha-2-macroglobulin receptor-associated protein, LRPAP1.8829.4.3)	0.22	[0.16-0.28] unit increase	Affymetrix [10572788] (imputed)	N
606	chr6_cox_hap2	2799295	2799296	rs28367727	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	6p21.33	NR	rs28367727-G	0.229348	1E-9		0.0520093	[0.035-0.069] unit decrease	Affymetrix [17914406] (imputed)	N
606	chr6_cox_hap2	2800692	2800693	rs9265113	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	6p21.33		rs9265113-C	0.592366	4E-13		0.0285779	[0.021-0.036] unit increase	NR [11722792] (imputed)	N
606	chr6_cox_hap2	2800692	2800693	rs9265113	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large HDL	115,082 European ancestry individuals	NA	6p21.33		rs9265113-C	0.592366	3E-13		0.0287846	[0.021-0.037] unit increase	NR [11722792] (imputed)	N
606	chr6_cox_hap2	2800692	2800693	rs9265113	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	6p21.33		rs9265113-C	0.592366	2E-12		0.0277589	[0.02-0.035] unit increase	NR [11722792] (imputed)	N
606	chr6_cox_hap2	2800692	2800693	rs9265113	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	6p21.33		rs9265113-C	0.592366	8E-13		0.0281895	[0.02-0.036] unit increase	NR [11722792] (imputed)	N
606	chr6_cox_hap2	2800692	2800693	rs9265113	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	6p21.33		rs9265113-C	0.592366	2E-12		0.0281201	[0.02-0.036] unit increase	NR [11722792] (imputed)	N
606	chr6_cox_hap2	2800692	2800693	rs9265113	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	6p21.33		rs9265113-C	0.592366	3E-13		0.0295629	[0.022-0.037] unit increase	NR [11722792] (imputed)	N
606	chr6_cox_hap2	2800692	2800693	rs9265113	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	6p21.33		rs9265113-C	0.592366	1E-12		0.0281506	[0.02-0.036] unit increase	NR [11722792] (imputed)	N
606	chr6_cox_hap2	2800692	2800693	rs9265113	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	6p21.33		rs9265113-C	0.592366	1E-11		0.0270795	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
606	chr6_cox_hap2	2801227	2801228	rs9265143	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p21.33	NR	rs9265143-A	0.408	6E-6	(IFNalpha_STAT1_of_CD4p_T)			Illumina [5084123] (imputed)	N
606	chr6_cox_hap2	2801438	2801439	rs4445093	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (vasodilators used in cardiac diseases)	5,546 European ancestry cases, 237,113 European ancestry controls, 17,050 East Asian ancestry cases, 161,676 East Asian ancestry controls	NA	6p21.33		rs4445093-T	NR	3E-8		0.0768	[0.05-0.104] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
606	chr6_cox_hap2	2802075	2802076	rs9265153	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Angiopoietin-1 receptor levels	21,758 European ancestry individuals	9,173 individuals	6p21.33		rs9265153-C	0.37	1E-10		0.0638	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
606	chr6_cox_hap2	2802139	2802140	rs7748141	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PDIA5	5,366 Icelandic ancestry individuals	NA	6p21.33		rs7748141-C	0.07983	2E-47		0.504487	[0.44-0.57] unit increase	Illumina [7506463] (imputed)	N
606	chr6_cox_hap2	2811204	2811205	rs28895001	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.33		rs28895001-T	0.163489	8E-27		0.045384236	[0.037-0.054] unit decrease	Affymetrix [93095623] (imputed)	N
606	chr6_cox_hap2	2811762	2811763	rs7772894	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on memory B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs7772894-T	0.10721	3E-9		0.2956	[0.2-0.39] unit increase	Illumina [18238311] (imputed)	N
606	chr6_cox_hap2	2811762	2811763	rs7772894	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on CD24+ CD27+ B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs7772894-T	0.10721	3E-9		0.2945	[0.2-0.39] unit increase	Illumina [18238311] (imputed)	N
606	chr6_cox_hap2	2812126	2812127	rs17192757	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling miserable	376,097 European ancestry individuals	NA	6p21.33	PSORS1C1	rs17192757-A	0.132647	5E-8		5.46	z score increase	NR [10847151] (imputed)	N
606	chr6_cox_hap2	2812347	2812348	rs9265620	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	6p21.33		rs9265620-T	0.629786	1E-11		0.0263927	[0.019-0.034] unit decrease	NR [11722792] (imputed)	N
606	chr6_cox_hap2	2812347	2812348	rs9265620	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	6p21.33		rs9265620-T	0.629787	7E-13		0.0279211	[0.02-0.036] unit increase	NR [11722792] (imputed)	N
606	chr6_cox_hap2	2812946	2812947	rs6902116	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	6p21.33	HLA-B	rs6902116-A	0.677972	2E-40		0.0274179	[0.023-0.031] unit increase	Affymetrix [NR] (imputed)	N
606	chr6_cox_hap2	2813479	2813480	rs12212594	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Psoriasis vulgaris	5,072 European ancestry cases, 478,102 European ancestry controls, 206 East Asian ancestry cases, 172,289 East Asian ancestry controls	NA	6p21.33		rs12212594-C	NR	5E-209		1.4454	[1.35-1.54] unit increase	Affymetrix, Illumina [25844455] (imputed)	N
606	chr6_cox_hap2	2813999	2814000	rs6908001	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	6p21.33		rs6908001-C	NR	4E-36		0.0278	[0.023-0.032] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
606	chr6_cox_hap2	2814302	2814303	rs28752871	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	76 Han Chinese ancestry cases, 889 Han Chinese ancestry controls	NA	6p21.33	HLA-B	rs28752871-?	NR	5E-8	(conditional on rs12110437 and rs1264697)			Illumina [3403929] (imputed)	N
606	chr6_cox_hap2	2815191	2815192	rs9265742	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CPXM1	5,363 Icelandic ancestry individuals	NA	6p21.33		rs9265742-A	0.2045	4E-12		0.162501	[0.12-0.21] unit decrease	Illumina [7506463] (imputed)	N
606	chr6_cox_hap2	2815308	2815309	rs11968046	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	6p21.33		rs11968046-C	0.772833	5E-11		0.0309702	[0.022-0.04] unit decrease	NR [11722792] (imputed)	N
606	chr6_cox_hap2	2815308	2815309	rs11968046	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	6p21.33		rs11968046-C	0.772833	2E-10		0.0301683	[0.021-0.04] unit decrease	NR [11722792] (imputed)	N
606	chr6_cox_hap2	2815308	2815309	rs11968046	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	6p21.33		rs11968046-C	0.772833	2E-10		0.030047	[0.021-0.039] unit decrease	NR [11722792] (imputed)	N
606	chr6_cox_hap2	2815308	2815309	rs11968046	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Triglyceride levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	6p21.33	HLA-C, HLA-B	rs11968046-?		2E-11		0.0605	[0.043-0.078] unit decrease	Illumina [31500000] (imputed)	N
606	chr6_cox_hap2	2815384	2815385	rs9265745	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.33		rs9265745-A	0.591	7E-36				Affymetrix [10369434] (imputed)	N
606	chr6_cox_hap2	2815941	2815942	rs1634774	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.33		rs1634774-A	0.68	1E-34				Affymetrix [10369434] (imputed)	N
606	chr6_cox_hap2	2815945	2815946	rs28752890	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs28752890-A	NR	2E-12		0.0210684	[0.015-0.027] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_cox_hap2	2815945	2815946	rs28752890	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs28752890-A	NR	1E-11		0.0202141	[0.014-0.026] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_cox_hap2	2815945	2815946	rs28752890	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs28752890-A	NR	4E-11		0.0198841	[0.014-0.026] unit increase	Affymetrix [321169] (imputed)	N
606	chr6_cox_hap2	2815990	2815991	rs114444221	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	6p21.33	HLA-B	rs114444221-?	NR	9E-18		1.133	[1.1-1.16]	Affymetrix [9000000] (imputed)	N
606	chr6_cox_hap2	2815990	2815991	rs114444221	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	6p21.33	HLA-B	rs114444221-A	NR	9E-16		1.134	[1.1-1.17]	Affymetrix [9000000] (imputed)	N
606	chr6_cox_hap2	2816545	2816546	rs28752923	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6p21.33		rs28752923-?	NR	4E-10		0.9344	[0.91-0.96]	NR [685523]	N
606	chr6_cox_hap2	2816588	2816589	rs28752924	34454985	Sliz E	2021-08-26	J Allergy Clin Immunol	Uniting biobank resources reveals novel genetic pathways modulating susceptibility for atopic dermatitis.	Atopic dermatitis	22,474 European ancestry cases, 774,187 European ancestry controls	NA	6p21.33	NR	rs28752924-t	0.6336	5E-11		1.1	[1.07-1.14]	Affymetrix, Illumina [16201029] (imputed)	N
606	chr6_cox_hap2	2816957	2816958	rs28752936	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs28752936-A	NR	5E-11		0.0187215	[0.013-0.024] unit increase	Affymetrix [321169] (imputed)	N
606	chr6_cox_hap2	2817061	2817062	rs1634769	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p21.33	NR	rs1634769-A	0.649245	2E-13		0.026251458	[0.019-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
606	chr6_cox_hap2	2817154	2817155	rs380852	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6p21.33	NR	rs380852-T	0.05472	7E-15		1.107	[1.08-1.135]	Affymetrix [15688218] (imputed)	N
606	chr6_cox_hap2	2817298	2817299	rs28752949	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs28752949-A	NR	3E-9		0.0170482	[0.011-0.023] unit decrease	Affymetrix [321016] (imputed)	N
606	chr6_cox_hap2	2818307	2818308	rs1631951	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p21.33	NR	rs1631951-T	0.18	4E-12		1.15	[1.11-1.2]	Affymetrix [9886854] (imputed)	N
606	chr6_cox_hap2	2818307	2818308	rs1631951	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p21.33	NR	rs1631951-T	0.18	6E-17			[NR]	Affymetrix [9886854] (imputed)	N
606	chr6_cox_hap2	2818307	2818308	rs1631951	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p21.33	NR	rs1631951-T	0.18	2E-15		1.13	[1.1-1.16]	Affymetrix [9886854] (imputed)	N
606	chr6_cox_hap2	2818307	2818308	rs1631951	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p21.33	NR	rs1631951-T	0.18	3E-16			[NR]	Affymetrix [9886854] (imputed)	N
606	chr6_cox_hap2	2818307	2818308	rs1631951	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in non-current smokers	16,488 European ancestry cases, 169,688 European ancestry controls	NA	6p21.33	NR	rs1631951-T	0.18	2E-15		1.13	[1.1-1.16]	Affymetrix [9886854] (imputed)	N
606	chr6_cox_hap2	2818307	2818308	rs1631951	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in never smokers	8,631 European ancestry cases, 120,544 European ancestry controls	NA	6p21.33	NR	rs1631951-T	0.18	3E-12		1.15	[1.11-1.2]	Affymetrix [9886854] (imputed)	N
606	chr6_cox_hap2	2818307	2818308	rs1631951	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in ever smokers	12,446 European ancestry cases, 59,145 European ancestry controls	NA	6p21.33	NR	rs1631951-T	0.18	4E-7		1.1	[1.06-1.14]	Affymetrix [9886854] (imputed)	N
606	chr6_cox_hap2	2818397	2818398	rs28367832	32004448	Savage SA	2020-01-30	Am J Hum Genet	Genome-wide Association Study Identifies HLA-DPB1 as a Significant Risk Factor for Severe Aplastic Anemia.	Severe aplastic anemia	359 European ancestry cases, 1,396 European ancestry controls	175 European ancestry cases, 1,059 European ancestry controls	6p21.33	HLA-B	rs28367832-?	NR	7E-9		1.49	[1.22-1.78]	Illumina [688067]	N
606	chr6_cox_hap2	2819086	2819087	rs1625792	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Help-seeking from a GP	113,262 British ancestry cases, 219,360 British ancestry controls	NA	6p21.33	NR	rs1625792-G	0.853	5E-8		1.0405828	[1.03-1.05]	NR [5276842] (imputed)	N
606	chr6_cox_hap2	2819086	2819087	rs1625792	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p21.33	NR	rs1625792-?	NR	1E-7		5.298	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
606	chr6_cox_hap2	2821522	2821523	rs1622406	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	HLA-B, HLA-C, XXbac-BPG248L24.12, MICB, USP8P1, RPL3P2, MIR6891, PPIAP9, XXbac-BPG16N22.5	rs1622406-T	0.03009027	7E-63	(EA, Alpha-2-macroglobulin receptor-associated protein)	2.011	[1.79-2.23] unit increase	Affymetrix [509946]	N
606	chr6_cox_hap2	2821917	2821918	rs34872474	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.33		rs34872474-G	0.0764200000000001	2E-15		0.042707935	[0.032-0.053] unit decrease	Affymetrix [93095623] (imputed)	N
606	chr6_cox_hap2	2822111	2822112	rs113021938	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	6p21.33		rs113021938-G	0.027345	2E-14		0.052308656	[0.039-0.066] unit decrease	Affymetrix [93095623] (imputed)	N
606	chr6_cox_hap2	2823881	2823882	rs2854011	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.33		rs2854011-G	0.848	4E-80				Affymetrix [10369434] (imputed)	N
606	chr6_cox_hap2	2823881	2823882	rs2854011	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p21.33		rs2854011-G	0.848	4E-55				Affymetrix [10369434] (imputed)	N
606	chr6_cox_hap2	2823965	2823966	rs28380833	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs28380833-?		8E-9		1.8	[1.47-2.20]	Illumina [7645193] (imputed)	N
606	chr6_cox_hap2	2824025	2824026	rs9265828	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6p21.33		rs9265828-G	0.569472	1E-13		0.026239738	[0.019-0.033] unit increase	Affymetrix [93095623] (imputed)	N
606	chr6_cox_hap2	2824046	2824047	rs9265830	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs9265830-A	NR	5E-28		0.0333407	[0.027-0.039] unit decrease	Affymetrix [319769] (imputed)	N
606	chr6_cox_hap2	2824046	2824047	rs9265830	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs9265830-A	NR	3E-26		0.0322127	[0.026-0.038] unit decrease	Affymetrix [319769] (imputed)	N
606	chr6_cox_hap2	2824046	2824047	rs9265830	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs9265830-A	NR	1E-8		0.0174211	[0.011-0.023] unit decrease	Affymetrix [321114] (imputed)	N
606	chr6_cox_hap2	2824046	2824047	rs9265830	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs9265830-A	NR	4E-25		0.0318177	[0.026-0.038] unit decrease	Affymetrix [321169] (imputed)	N
606	chr6_cox_hap2	2824582	2824583	rs2394976	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to omega-3 fatty acids	115,006 European ancestry individuals	NA	6p21.33		rs2394976-G	0.838358	5E-9		0.0315075	[0.021-0.042] unit decrease	NR [11722792] (imputed)	N
606	chr6_cox_hap2	2824729	2824730	rs2394977	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-B	rs2394977-G	NR	2E-12		0.0222252	[0.016-0.028] unit increase	Affymetrix [323858] (imputed)	N
606	chr6_cox_hap2	2824729	2824730	rs2394977	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HLA-B	rs2394977-G	NR	4E-11		0.0207721	[0.015-0.027] unit increase	Affymetrix [127266] (imputed)	N
606	chr6_cox_hap2	2824729	2824730	rs2394977	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-B	rs2394977-G	NR	6E-20		0.028162	[0.022-0.034] unit decrease	Affymetrix [323123] (imputed)	N
606	chr6_cox_hap2	2824730	2824731	rs2256752	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	6p21.33	intergenic	rs2256752-C	0.3515	2E-13		0.02753249	[0.02-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
606	chr6_cox_hap2	2824964	2824965	rs4521636	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-B	rs4521636-T	NR	2E-9		0.0186949	[0.013-0.025] unit decrease	Affymetrix [323858] (imputed)	N
606	chr6_cox_hap2	2824964	2824965	rs4521636	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HLA-B	rs4521636-T	NR	2E-8		0.0174949	[0.011-0.024] unit decrease	Affymetrix [127266] (imputed)	N
606	chr6_cox_hap2	2824964	2824965	rs4521636	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-B	rs4521636-T	NR	2E-16		0.0251493	[0.019-0.031] unit increase	Affymetrix [323123] (imputed)	N
606	chr6_cox_hap2	2824997	2824998	rs3134792	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.33	intergenic	rs3134792-C	0.114	6E-72		3.93	[NR]	Illumina [242824]	N
606	chr6_cox_hap2	2824997	2824998	rs3134792	18364390	Capon F	2008-03-25	Hum Mol Genet	Identification of ZNF313/RNF114 as a novel psoriasis susceptibility gene.	Psoriasis	318 European ancestry cases, 288 European ancestry controls	2,361 European ancestry cases, 1,927 European ancestry controls	6p21.33	HLA-C	rs3134792-?	NR	1E-9				Illumina [~ 408000]	N
606	chr6_cox_hap2	2825209	2825210	rs2854008	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p21.33	NR	rs2854008-A	0.274988	5E-92				Affymetrix, Illumina [24332387] (imputed)	N
606	chr6_cox_hap2	2825209	2825210	rs2854008	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	6p21.33	NR	rs2854008-A	0.293344	2E-97		0.04242	[0.038-0.046] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
606	chr6_cox_hap2	2825701	2825702	rs2394982	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	6p21.33	intergenic	rs2394982-T	0.3056	8E-9		0.02209588	[0.015-0.03] unit increase	Affymetrix [~ 2500000] (imputed)	N
606	chr6_cox_hap2	2825704	2825705	rs9265878	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs9265878-G	0.732	2E-102				Affymetrix [10369434] (imputed)	N
606	chr6_cox_hap2	2825891	2825892	rs9265885	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	120,539 East Asian ancestry individuals	NA	6p21.33		rs9265885-C	0.425161	1E-20		0.0356702	[0.028-0.043] unit decrease	Illumina [13474682] (imputed)	N
606	chr6_cox_hap2	2825929	2825930	rs9265888	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs9265888-T	NR	2E-8		0.0163341	[0.011-0.022] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_cox_hap2	2826140	2826141	rs9265902	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.33		rs9265902-G	0.721	5E-33				Affymetrix [10369434] (imputed)	N
606	chr6_cox_hap2	2826140	2826141	rs9265902	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-B	rs9265902-A	NR	1E-9		0.0207461	[0.014-0.027] unit decrease	Affymetrix [323123] (imputed)	N
606	chr6_cox_hap2	2826140	2826141	rs9265902	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs9265902-A	NR	1E-8		0.0181136	[0.012-0.024] unit increase	Affymetrix [321169] (imputed)	N
606	chr6_cox_hap2	2826273	2826274	rs9265906	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-B	rs9265906-C	NR	5E-8		0.0168982	[0.011-0.023] unit decrease	Affymetrix [323123] (imputed)	N
606	chr6_cox_hap2	2826273	2826274	rs9265906	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs9265906-C	NR	4E-8		0.0157447	[0.01-0.021] unit increase	Affymetrix [321169] (imputed)	N
606	chr6_cox_hap2	2826737	2826738	rs12175330	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-B	rs12175330-T	NR	1E-13		0.0240282	[0.018-0.03] unit decrease	Affymetrix [323123] (imputed)	N
606	chr6_cox_hap2	2826737	2826738	rs12175330	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs12175330-T	NR	1E-8		0.0170347	[0.011-0.023] unit increase	Affymetrix [321169] (imputed)	N
606	chr6_cox_hap2	2826777	2826778	rs3016018	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.33		rs3016018-C	NR	2E-14		1.132	[1.097-1.169]	Affymetrix [7846216] (imputed)	N
606	chr6_cox_hap2	2827317	2827318	rs2507999	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Keratinocyte cancer (MTAG)	at least 18,538 European ancestry cases, at least 340,302 European ancestry controls	NA	6p21.33	HLA-B	rs2507999-A	0.328281	1E-10		1.0638298	[1.04-1.08]	Affymetrix [7600000] (imputed)	N
606	chr6_cox_hap2	2827704	2827705	rs9265940	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs9265940-G	NR	3E-19		0.0271089	[0.021-0.033] unit increase	Affymetrix [321016] (imputed)	N
606	chr6_cox_hap2	2827729	2827730	rs9265942	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	6p21.33		rs9265942-C	0.871684	4E-12		0.0455219	[0.033-0.058] unit decrease	NR [11722792] (imputed)	N
606	chr6_cox_hap2	2827907	2827908	rs28771425	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	CX3CL1 levels	21,758 European ancestry individuals	9,173 individuals	6p21.33		rs28771425-A	0.43	5E-19		0.099	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
606	chr6_cox_hap2	2828026	2828027	rs9265954	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	6p21.33	HLA-B	rs9265954-T	0.0497	2E-18		0.0604	[0.047-0.074] unit increase	Affymetrix [18391927] (imputed)	N
606	chr6_cox_hap2	2828050	2828051	rs9265956	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.33		rs9265956-T	0.324	2E-45				Affymetrix [10369434] (imputed)	N
606	chr6_cox_hap2	2828095	2828095	rs111721712	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6p21.33		rs111721712-C	0.530439	2E-12		0.0293352	[0.021-0.037] unit increase	NR [11722792] (imputed)	N
606	chr6_cox_hap2	2828095	2828095	rs111721712	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6p21.33		rs111721712-C	0.530439	1E-12		0.0294594	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
606	chr6_cox_hap2	2828095	2828095	rs111721712	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	6p21.33		rs111721712-C	0.534	9E-42		0.15	[0.13-0.17] % increase	Affymetrix [NR] (imputed)	N
606	chr6_cox_hap2	2828095	2828095	rs111721712	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs111721712-CT	NR	8E-10		0.0174035	[0.012-0.023] unit decrease	Affymetrix [321016] (imputed)	N
606	chr6_cox_hap2	2828095	2828095	rs111721712	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	6p21.33	intergenic	rs111721712-CT	0.4708	1E-26		0.03814722	[0.031-0.045] unit increase	Affymetrix [~ 2500000] (imputed)	N
606	chr6_cox_hap2	2828199	2828200	rs116685461	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	6p21.33	MHC	rs116685461-G	0.8755	3E-6		1.06	[1.04-1.09]	Affymetrix, Illumina [16900397] (imputed)	N
606	chr6_cox_hap2	2828199	2828200	rs116685461	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	6p21.33	intergenic	rs116685461-A	0.098	5E-11		0.04047215	[0.028-0.053] unit decrease	Affymetrix [~ 2500000] (imputed)	N
606	chr6_cox_hap2	2828316	2828317	rs9265965	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium HDL	115,082 European ancestry individuals	NA	6p21.33		rs9265965-T	0.867699	1E-14		0.0453236	[0.034-0.057] unit increase	NR [11722792] (imputed)	N
606	chr6_cox_hap2	2828350	2828351	rs9265968	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	6p21.33	HLA-B	rs9265968-A	0.866272	1E-21		0.0201268	[0.016-0.024] unit decrease	Affymetrix [12370749]	N
606	chr6_cox_hap2	2829147	2829148	rs116438126	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	6p21.33	intergenic	rs116438126-T	0.0084	6E-18		0.1721088	[0.13-0.21] unit increase	Affymetrix [~ 2500000] (imputed)	N
606	chr6_cox_hap2	2829258	2829259	rs200291258	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atopic dermatitis	4,296 East Asian ancestry cases, 163,807 East Asian ancestry controls	NA	6p21.33		rs200291258-A	0.179174296	6E-15		0.25656497	[0.19-0.32] unit decrease	Illumina [13428180] (imputed)	N
606	chr6_cox_hap2	2829447	2829448	rs5014819	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs5014819-T	NR	3E-15		0.0226584	[0.017-0.028] unit decrease	Affymetrix [321016] (imputed)	N
606	chr6_cox_hap2	2829598	2829599	rs2923008	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in diabetes	70,762 European ancestry individuals, 20,967 African American individuals	NA	6p21.33	HLA-B	rs2923008-T	0.106	2E-12		1.017	[0.73-1.3] unit decrease	Affymetrix [NR] (imputed)	N
606	chr6_cox_hap2	2831264	2831265	rs34213790	28062682	Carr DF	2017-01-05	J Antimicrob Chemother	Genome-wide association study of nevirapine hypersensitivity in a sub-Saharan African HIV-infected population.	Nevirapine-induced hypersensitivity in HIV	151 Sub-saharan African ancestry cases, 182 Sub-saharan African ancestry controls	62 Sub-Saharan African ancestry cases, 60 Sub-Saharan African ancestry controls	6p21.33	HLA-B	rs34213790-A	0.37	7E-7		2.06	[1.55-2.74]	Illumina [14218511] (imputed)	N
606	chr6_cox_hap2	2831315	2831316	rs9266043	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-B	rs9266043-A	NR	8E-29		0.035895	[0.03-0.042] unit increase	Affymetrix [323123] (imputed)	N
606	chr6_cox_hap2	2831470	2831471	rs2596505	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p21.33	NR	rs2596505-T	0.1681	1E-8		0.009	[0.0059-0.0121] unit decrease	NR [7666894] (imputed)	N
606	chr6_cox_hap2	2831657	2831658	rs9391774	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	6p21.33	HLA-B	rs9391774-A	0.070171	8E-17		0.03854895	[0.029-0.048] unit decrease	Affymetrix [93095623] (imputed)	N
606	chr6_cox_hap2	2831764	2831765	rs73728881	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.33		rs73728881-C	0.408	8E-101				Affymetrix [10369434] (imputed)	N
606	chr6_cox_hap2	2831842	2831843	rs2442730	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	6p21.33	HLA-B	rs2442730-A	0.723193	2E-43		0.03767923	[0.032-0.043] unit decrease	Affymetrix [93095623] (imputed)	N
606	chr6_cox_hap2	2831907	2831908	rs9266059	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs9266059-C	NR	7E-15		0.0219789	[0.016-0.028] unit decrease	Affymetrix [319769] (imputed)	N
606	chr6_cox_hap2	2831907	2831908	rs9266059	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs9266059-C	NR	1E-13		0.0210357	[0.015-0.027] unit decrease	Affymetrix [319769] (imputed)	N
606	chr6_cox_hap2	2831907	2831908	rs9266059	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs9266059-C	NR	3E-12		0.0197526	[0.014-0.025] unit increase	Affymetrix [321016] (imputed)	N
606	chr6_cox_hap2	2831907	2831908	rs9266059	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-B	rs9266059-C	NR	2E-12		0.0216682	[0.016-0.028] unit increase	Affymetrix [323123] (imputed)	N
606	chr6_cox_hap2	2831907	2831908	rs9266059	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs9266059-C	NR	3E-12		0.0199124	[0.014-0.026] unit decrease	Affymetrix [321169] (imputed)	N
606	chr6_cox_hap2	2832076	2832077	rs9266063	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs9266063-A	NR	1E-9		0.017108	[0.012-0.023] unit increase	Affymetrix [321016] (imputed)	N
606	chr6_cox_hap2	2832082	2832083	rs34429926	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	6p21.33	HLA-C, HLA-B	rs34429926-?	NR	3E-29		0.04099494	[0.034-0.048] unit increase	Illumina [27896057] (imputed)	N
606	chr6_cox_hap2	2832174	2832175	rs9405083	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-B	rs9405083-T	NR	5E-10		0.0221393	[0.015-0.029] unit decrease	Affymetrix [323123] (imputed)	N
606	chr6_cox_hap2	2832271	2832272	rs4644106	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs4644106-C	NR	9E-14		0.0259517	[0.019-0.033] unit decrease	Affymetrix [319769] (imputed)	N
606	chr6_cox_hap2	2832271	2832272	rs4644106	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs4644106-C	NR	9E-14		0.0259699	[0.019-0.033] unit decrease	Affymetrix [319769] (imputed)	N
606	chr6_cox_hap2	2832271	2832272	rs4644106	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-B	rs4644106-C	NR	5E-10		0.0235741	[0.016-0.031] unit increase	Affymetrix [323123] (imputed)	N
606	chr6_cox_hap2	2832288	2832289	rs28380929	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pneumonia	7,423 East Asian ancestry cases, 171,303 East Asian ancestry controls	NA	6p21.33		rs28380929-T	0.015924804	5E-22		0.70876914	[0.56-0.85] unit increase	Illumina [13429980] (imputed)	N
606	chr6_cox_hap2	2832567	2832568	rs9266077	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p21.33	XXbac-BPG248L24.12	rs9266077-G	0.149984	4E-50		0.05959745	[0.052-0.067] unit increase	Affymetrix [93095623] (imputed)	N
606	chr6_cox_hap2	2832584	2832585	rs2442725	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs2442725-T	NR	5E-8		0.0167286	[0.011-0.023] unit decrease	Affymetrix [319769] (imputed)	N
606	chr6_cox_hap2	2832584	2832585	rs2442725	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs2442725-T	NR	4E-8		0.0167925	[0.011-0.023] unit decrease	Affymetrix [319769] (imputed)	N
606	chr6_cox_hap2	2832611	2832612	rs36057735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium HDL	115,082 European ancestry individuals	NA	6p21.33		rs36057735-C	0.80097	9E-14		0.0357792	[0.026-0.045] unit increase	NR [11722792] (imputed)	N
606	chr6_cox_hap2	2832611	2832612	rs36057735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in HDL	115,082 European ancestry individuals	NA	6p21.33		rs36057735-C	0.80097	8E-14		0.0346386	[0.026-0.044] unit increase	NR [11722792] (imputed)	N
606	chr6_cox_hap2	2832611	2832612	rs36057735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in HDL	115,082 European ancestry individuals	NA	6p21.33		rs36057735-C	0.80097	2E-13		0.0344232	[0.025-0.044] unit increase	NR [11722792] (imputed)	N
606	chr6_cox_hap2	2832611	2832612	rs36057735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	6p21.33		rs36057735-C	0.80097	5E-14		0.035387	[0.026-0.045] unit increase	NR [11722792] (imputed)	N
606	chr6_cox_hap2	2832611	2832612	rs36057735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium HDL particles	115,082 European ancestry individuals	NA	6p21.33		rs36057735-C	0.80097	9E-14		0.0354958	[0.026-0.045] unit increase	NR [11722792] (imputed)	N
606	chr6_cox_hap2	2832611	2832612	rs36057735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium HDL	115,082 European ancestry individuals	NA	6p21.33		rs36057735-C	0.80097	3E-12		0.0333993	[0.024-0.043] unit increase	NR [11722792] (imputed)	N
606	chr6_cox_hap2	2832611	2832612	rs36057735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	6p21.33		rs36057735-C	0.80097	9E-13		0.0339999	[0.025-0.043] unit increase	NR [11722792] (imputed)	N
606	chr6_cox_hap2	2832611	2832612	rs36057735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein A1 levels	115,082 European ancestry individuals	NA	6p21.33		rs36057735-C	0.80097	4E-14		0.0357836	[0.027-0.045] unit increase	NR [11722792] (imputed)	N
606	chr6_cox_hap2	2832611	2832612	rs36057735	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	6p21.33	HLA-B	rs36057735-C	0.800848	3E-35		0.0304388	[0.026-0.035] unit increase	Affymetrix [NR] (imputed)	N
606	chr6_cox_hap2	2832611	2832612	rs36057735	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling nervous	373,121 European ancestry individuals	NA	6p21.33	NR	rs36057735-C	0.195566	1E-8		5.69	z score increase	NR [10847151] (imputed)	N
606	chr6_cox_hap2	2832611	2832612	rs36057735	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.33	C6orf15, CCHCR1, CDSN, HCG22, HCG26, HCG27, HCP5, HLA-B, HLA-C, MICA, MIR6891, POU5F1, PSORS1C1, PSORS1C2, PSORS1C3, TCF19	rs36057735-C		2E-12		1.1	[1.07-1.13]	Affymetrix, Illumina [NR]	N
606	chr6_cox_hap2	2832997	2832998	rs2507993	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large HDL	115,082 European ancestry individuals	NA	6p21.33		rs2507993-C	0.51967	4E-10		0.0257964	[0.018-0.034] unit increase	NR [11722792] (imputed)	N
606	chr6_cox_hap2	2832997	2832998	rs2507993	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large HDL	115,082 European ancestry individuals	NA	6p21.33		rs2507993-C	0.51967	2E-9		0.0247775	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
606	chr6_cox_hap2	2832997	2832998	rs2507993	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large HDL particles	115,082 European ancestry individuals	NA	6p21.33		rs2507993-C	0.51967	9E-10		0.0253075	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
606	chr6_cox_hap2	2832997	2832998	rs2507993	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	6p21.33		rs2507993-C	0.51967	4E-11		0.0271386	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
606	chr6_cox_hap2	2832997	2832998	rs2507993	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	6p21.33		rs2507993-C	0.51967	4E-11		0.0272976	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
606	chr6_cox_hap2	2833197	2833198	rs9266089	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Chickenpox	107,769 European ancestry cases, 15,982 European ancestry controls	NA	6p21.33	HLA-B	rs9266089-G	0.85	1E-10		1.12	[1.1-1.14]	Illumina [at least 560000] (imputed)	N
606	chr6_cox_hap2	2833226	2833227	rs2442719	26039976	Wei Z	2015-06-17	Sci Rep	Genome-Wide Association Studies of HIV-1 Host Control in Ethnically Diverse Chinese Populations.	HIV-1 viral setpoint	326 Han Chinese ancestry cases, 58 Dai Chinese ancestry cases, 40 Jingpo Chinese ancestry cases, 83 Uygur Chinese ancestry cases, 11 Hui Chinese ancestry cases, 20 East Asian cases	NA	6p21.33	HLA-C, HLA-B	rs2442719-A	0.4161	8E-7	(Han)	0.3298	unit decrease	Illumina [up to 528294]	N
606	chr6_cox_hap2	2833250	2833251	rs2523616	30850646	Tziotzios C	2019-03-08	Nat Commun	Genome-wide association study in frontal fibrosing alopecia identifies four susceptibility loci including HLA-B*07:02.	Frontal fibrosing alopecia	1,016 European ancestry cases, 4,145 European ancestry controls		6p21.33	HLA-B	rs2523616-T	0.19	8E-119		4.73	[4.15-5.39]	Illumina [~ 8000000] (imputed)	N
606	chr6_cox_hap2	2833309	2833310	rs117598591	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	20,917 European ancestry cases, 440,906 European ancestry controls, 14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	6p21.33		rs117598591-A	NR	3E-20		0.2416	[0.19-0.29] unit increase	Affymetrix, Illumina [25841367] (imputed)	N
606	chr6_cox_hap2	2833333	2833334	rs11753309	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Non-albumin protein levels	98,538 Japanese ancestry individuals	NA	6p21.33	HLA-C, HLA-B	rs11753309-?	NR	1E-12		0.07675	[0.056-0.098] unit increase novel	Illumina [6108953] (imputed)	N
606	chr6_cox_hap2	2833333	2833334	rs11753309	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Albumin-globulin ratio	98,626 Japanese ancestry individuals	NA	6p21.33	HLA-C, HLA-B	rs11753309-?	NR	4E-14		0.08157	[0.06-0.103] unit decrease novel	Illumina [6108953] (imputed)	N
606	chr6_cox_hap2	2833342	2833343	rs2523614	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Naive CD4-CD8- T cell %T cell	3,427 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs2523614-C	0.26364	6E-9		0.1522	[0.1-0.2] unit decrease	Illumina [18349913] (imputed)	N
606	chr6_cox_hap2	2833342	2833343	rs2523614	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	6p21.33	HLA-C, MICA	rs2523614-T	0.689	6E-10		0.0237097	[0.016-0.031] unit increase	Illumina [13519193] (imputed)	N
606	chr6_cox_hap2	2833342	2833343	rs2523614	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.33	HLA-C, MICA	rs2523614-T	0.689	2E-7	(men)	0.0253993	[0.016-0.035] unit increase	Illumina [13520550] (imputed)	N
606	chr6_cox_hap2	2833350	2833351	rs62396264	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs62396264-G	NR	1E-8		0.042766	[0.028-0.057] unit decrease	Affymetrix [321016] (imputed)	N
606	chr6_cox_hap2	2833537	2833538	rs35735140	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	6p21.33	XXbac-BPG248L24.12	rs35735140-C	0.0632	9E-33		0.08825474	[0.074-0.103] unit increase	Affymetrix [~ 2500000] (imputed)	N
606	chr6_cox_hap2	2833559	2833559	rs35506574	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs35506574-CTGA	NR	6E-13		0.0203427	[0.015-0.026] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_cox_hap2	2833559	2833559	rs35506574	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-B	rs35506574-CTGA	NR	6E-10		0.0194754	[0.013-0.026] unit increase	Affymetrix [323858] (imputed)	N
606	chr6_cox_hap2	2833559	2833559	rs35506574	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs35506574-CTGA	NR	2E-12		0.0198288	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_cox_hap2	2833559	2833559	rs35506574	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HLA-B	rs35506574-CTGA	NR	6E-9		0.0183276	[0.012-0.024] unit increase	Affymetrix [127266] (imputed)	N
606	chr6_cox_hap2	2833559	2833559	rs35506574	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs35506574-CTGA	NR	2E-15		0.0226739	[0.017-0.028] unit increase	Affymetrix [321169] (imputed)	N
606	chr6_cox_hap2	2833899	2833900	rs2596501	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs2596501-T	NR	2E-16		0.0231594	[0.018-0.029] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_cox_hap2	2833899	2833900	rs2596501	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs2596501-T	NR	3E-15		0.0222583	[0.017-0.028] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_cox_hap2	2833899	2833900	rs2596501	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs2596501-T	NR	7E-10		0.0173579	[0.012-0.023] unit decrease	Affymetrix [321016] (imputed)	N
606	chr6_cox_hap2	2833899	2833900	rs2596501	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-B	rs2596501-T	NR	5E-11		0.0201678	[0.014-0.026] unit decrease	Affymetrix [323123] (imputed)	N
606	chr6_cox_hap2	2833899	2833900	rs2596501	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs2596501-T	NR	1E-14		0.0219866	[0.016-0.028] unit increase	Affymetrix [321169] (imputed)	N
606	chr6_cox_hap2	2833955	2833956	rs2596500	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in ever smokers	23,223 European ancestry cases,  16,964 European ancestry controls	NA	6p21.33	HLA-B	rs2596500-C	0.110809826	2E-15		1.2094321	[1.153908741-1.267627282]	Illumina [10439017] (imputed)	N
606	chr6_cox_hap2	2833955	2833956	rs2596500	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	6p21.33	NR	rs2596500-A	NR	8E-20		1.18	[NR]	Illumina [7158791] (imputed)	N
606	chr6_cox_hap2	2834015	2834016	rs9266095	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs9266095-G	NR	1E-9		0.0211771	[0.014-0.028] unit decrease	Affymetrix [321016] (imputed)	N
606	chr6_cox_hap2	2834095	2834096	rs12196740	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.33	NR	rs12196740-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
606	chr6_cox_hap2	2834113	2834114	rs9378247	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-B	rs9378247-A	NR	3E-11		0.0265014	[0.019-0.034] unit decrease	Affymetrix [323123] (imputed)	N
606	chr6_cox_hap2	2834212	2834213	rs2844584	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	6p21.33	NR	rs2844584-?	NR	2E-21	(conditional)			Affymetrix [15688218] (imputed)	N
606	chr6_cox_hap2	2834345	2834346	rs3177747	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PRSS57	5,358 Icelandic ancestry individuals	NA	6p21.33		rs3177747-A	0.01609	7E-71		1.26085	[1.12-1.4] unit increase	Illumina [7506463] (imputed)	N
606	chr6_cox_hap2	2834544	2834545	rs2768	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs2768-G	NR	2E-10		0.0206722	[0.014-0.027] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_cox_hap2	2834544	2834545	rs2768	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-B	rs2768-G	NR	4E-8		0.0196291	[0.013-0.027] unit increase	Affymetrix [323858] (imputed)	N
606	chr6_cox_hap2	2834544	2834545	rs2768	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs2768-G	NR	9E-11		0.0209572	[0.015-0.027] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_cox_hap2	2834544	2834545	rs2768	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs2768-G	NR	5E-9		0.0190456	[0.013-0.025] unit increase	Affymetrix [321114] (imputed)	N
606	chr6_cox_hap2	2834544	2834545	rs2768	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs2768-G	NR	5E-12		0.0225379	[0.016-0.029] unit increase	Affymetrix [321169] (imputed)	N
606	chr6_cox_hap2	2834594	2834595	rs1093	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (age of onset)	37,846 British ancestry individuals	NA	6p21.33	NR	rs1093-G	0.212	8E-10		0.994	[0.68-1.31] unit decrease	Affymetrix [10894596] (imputed)	N
606	chr6_cox_hap2	2834603	2834604	rs1055890	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs1055890-G	NR	2E-10		0.0184831	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_cox_hap2	2834603	2834604	rs1055890	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs1055890-G	NR	4E-10		0.0182582	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_cox_hap2	2834603	2834604	rs1055890	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs1055890-G	NR	3E-12		0.0206002	[0.015-0.026] unit increase	Affymetrix [321169] (imputed)	N
606	chr6_cox_hap2	2834607	2834608	rs1055821	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Strep throat	52,487 European ancestry cases, 22,017 European ancestry controls	NA	6p21.33	HLA-B	rs1055821-T	0.06	8E-11		0.08	[0.06-0.09] unit increase	Illumina [at least 560000] (imputed)	N
606	chr6_cox_hap2	2834636	2834637	rs1055348	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	6p21.33	HLA-B	rs1055348-G	0.107	3E-22		0.05609307	[0.045-0.067] unit decrease	Affymetrix [~ 2500000] (imputed)	N
606	chr6_cox_hap2	2834817	2834818	rs17192932	30946743	Li Z	2019-04-04	PLoS Genet	Genome-wide association study in Turkish and Iranian populations identify rare familial Mediterranean fever gene (MEFV) polymorphisms associated with ankylosing spondylitis.	Ankylosing spondylitis	921 Turkish ancestry cases, 907 Turkish ancestry controls, 422 Iranian ancestry cases, 754 Iranian ancestry controls	NA	6p21.33	NR	rs17192932-?	NR	6E-120	(Turkish)	22.84	[17.55-29.72]	Illumina [up to 294091]	N
606	chr6_cox_hap2	2834821	2834822	rs3819306	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-B	rs3819306-G	NR	3E-9		0.0189605	[0.013-0.025] unit decrease	Affymetrix [323123] (imputed)	N
606	chr6_cox_hap2	2834821	2834822	rs3819306	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count (basophil)	171,846 European ancestry individuals	NA	6p21.33	HLA-B	rs3819306-G	0.3663	8E-23		0.03592633	[0.029-0.043] unit increase	Affymetrix [~ 2500000] (imputed)	N
606	chr6_cox_hap2	2834832	2834833	rs3819305	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs3819305-G	NR	2E-10		0.0235724	[0.016-0.031] unit decrease	Affymetrix [321016] (imputed)	N
606	chr6_cox_hap2	2834885	2834886	rs2428494	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	6p21.33	ABHD16A, AIF1, APOM, ATP6V1G2, ATP6V1G2-DDX39B, BAG6, C6orf25, C6orf47, CCHCR1, CLIC1, CSNK2B, DDAH2, DDX39B, GPANK1, HCG26, HCG27, HCP5, HLA-B, HLA-C, LST1, LTA, LTB, LY6G5B, LY6G5C, LY6G6C, LY6G6D, LY6G6E, LY6G6F, MCCD1, MICA, MICB, MIR4646, MIR6832, MIR6891, MSH5, MSH5-SAPCD1, NCR3, NFKBIL1, POU5F1, PRRC2A, PSORS1C1, PSORS1C2, PSORS1C3, SAPCD1, SNORA38, SNORD84, SNORD117, TCF19, TNF, VWA7	rs2428494-A	0.476146	2E-14		1.0680295	[1.05-1.09]	Affymetrix [8274727] (imputed)	N
606	chr6_cox_hap2	2834885	2834886	rs2428494	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (childhood onset)	9,433 British ancestry cases, 318,237 British ancestry controls	NA	6p21.33	HLA-B, HLA-C, MICA	rs2428494-A	0.477	8E-23		1.157	[1.124-1.191]	Affymetrix [10894596] (imputed)	N
606	chr6_cox_hap2	2834885	2834886	rs2428494	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (adult onset)	21,564 British ancestry cases, 318,237 British ancestry controls	NA	6p21.33	HLA-B, HLA-C, MICA	rs2428494-A	0.477	5E-23		1.104	[1.082-1.126]	Affymetrix [10894596] (imputed)	N
606	chr6_cox_hap2	2834885	2834886	rs2428494	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	6p21.33	HLA-B	rs2428494-A	NR	2E-60		1.118	[1.1-1.13]	Affymetrix [9000000] (imputed)	N
606	chr6_cox_hap2	2834885	2834886	rs2428494	30643255	Kristjansson RP	2019-01-14	Nat Genet	A loss-of-function variant in ALOX15 protects against nasal polyps and chronic rhinosinusitis.	Nasal polyps	86 European ancestry whole-genome sequenced cases, 4,280 European ancestry cases, 13,941 European ancestry whole-genome sequenced controls, 700,740 European ancestry controls	NA	6p21.33	HLA-B	rs2428494-A	NR	5E-7		1.12	[1.07-1.17]	Affymetrix, Illumina [up to 37123566] (imputed)	N
606	chr6_cox_hap2	2834885	2834886	rs2428494	30013184	Waage J	2018-07-16	Nat Genet	Genome-wide association and HLA fine-mapping studies identify risk loci and genetic pathways underlying allergic rhinitis.	Allergic rhinitis	59,762 European and unknown ancestry cases, 152,358 European and unknown ancestry controls	60,720 European ancestry cases, 618,527 European ancestry controls	6p21.33	HLA-B, HLA-C	rs2428494-A	0.4226	7E-19		1.08	[1.06-1.09]	Affymetrix, Illumina, Perlegen [16531985] (imputed)	N
606	chr6_cox_hap2	2834885	2834886	rs2428494	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Asthma	28,399 European ancestry cases, 128,843 European ancestry controls	NA	6p21.33	HLA-C, MICA	rs2428494-?	NR	1E-16		1.0869565	[1.06-1.11]	Illumina [13747813] (imputed)	N
606	chr6_cox_hap2	2834917	2834918	rs3819301	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs3819301-G	NR	1E-10		0.0208254	[0.015-0.027] unit decrease	Affymetrix [321016] (imputed)	N
606	chr6_cox_hap2	2836464	2836464	rs5875313	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	6p21.33	HLA-B	rs5875313-?	NR	2E-22		0.039188	[0.031-0.047] unit decrease	Illumina [13520550] (imputed)	N
606	chr6_cox_hap2	2836892	2836892	rs760342210	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	74,970 East Asian ancestry individuals	NA	6p21.33		rs760342210-GCC	0.376979	5E-8		0.0270505	[0.017-0.037] unit increase	Illumina [13465896] (imputed)	N
606	chr6_cox_hap2	2837060	2837061	rs4999718	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	6p21.33	HLA-B	rs4999718-A	0.630768	4E-11		0.0144802	[0.01-0.019] unit decrease	Affymetrix [NR] (imputed)	N
606	chr6_cox_hap2	2838010	2838011	rs9266229	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.33	NR	rs9266229-C	NR	4E-9		0.023	unit decrease	Affymetrix [at least 7091467] (imputed)	N
606	chr6_cox_hap2	2838010	2838011	rs9266229	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.33	NR	rs9266229-C	0.53	1E-9	(EA)	0.026	unit decrease	Affymetrix [at least 7091467] (imputed)	N
606	chr6_cox_hap2	2838010	2838011	rs9266229	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.33	NR	rs9266229-C	NR	3E-10		0.027	unit decrease	Affymetrix [at least 7091467] (imputed)	N
606	chr6_cox_hap2	2838010	2838011	rs9266229	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.33	NR	rs9266229-C	0.53	2E-10	(EA)	0.03	unit decrease	Affymetrix [at least 7091467] (imputed)	N
606	chr6_cox_hap2	2838010	2838011	rs9266229	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.33	NR	rs9266229-C	NR	1E-6		0.021	unit decrease	Affymetrix [at least 7091467] (imputed)	N
606	chr6_cox_hap2	2838010	2838011	rs9266229	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.33	NR	rs9266229-C	0.53	1E-6	(EA)	0.023	unit decrease	Affymetrix [at least 7091467] (imputed)	N
606	chr6_cox_hap2	2838028	2838029	rs9266230	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	6p21.33	NR	rs9266230-G	0.359851	1E-35		0.0263621	[0.022-0.031] unit decrease	NR [NR]	N
606	chr6_cox_hap2	2838130	2838131	rs114777460	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mumps	31,227 European ancestry cases, 54,153 European ancestry controls	NA	6p21.33	NR	rs114777460-?	NR	4E-6		0.1022	[0.058-0.146] unit decrease	Illumina [at least 560000] (imputed)	N
606	chr6_cox_hap2	2838208	2838209	rs9266237	31527586	An J	2019-09-16	Nat Commun	Gastroesophageal reflux GWAS identifies risk loci that also associate with subsequent severe esophageal diseases.	Gastroesophageal reflux disease	80,265 European and unknown ancestry cases, 305,011 European and unknown ancestry controls	NA	6p21.33	MICA, HLA-B	rs9266237-C	NR	2E-11		1.0409149	[1.03-1.05]	Affymetrix, Illumina [up to 7600000] (imputed)	N
606	chr6_cox_hap2	2838379	2838380	rs9266244	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs9266244-G	NR	2E-20		0.0316292	[0.025-0.038] unit decrease	Affymetrix [323858] (imputed)	N
606	chr6_cox_hap2	2838379	2838380	rs9266244	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	6p21.33	HLA-B	rs9266244-A	0.7077	1E-94		0.0427	[0.039-0.047] unit decrease	Affymetrix [18391927] (imputed)	N
606	chr6_cox_hap2	2838389	2838390	rs9266245	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs9266245-A	NR	1E-17		0.0293064	[0.023-0.036] unit decrease	Affymetrix [127266] (imputed)	N
606	chr6_cox_hap2	2838389	2838390	rs9266245	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs9266245-A	NR	4E-9		0.0199304	[0.013-0.027] unit decrease	Affymetrix [323858] (imputed)	N
606	chr6_cox_hap2	2838389	2838390	rs9266245	30003630	Minica CC	2018-07-13	Addiction	GENOME-WIDE ASSOCIATION META-ANALYSIS OF AGE AT FIRST CANNABIS USE.	Cannabis use (age at onset)	24,953 European ancestry individuals	3,735 European ancestry individuals	6p21.33	NR	rs9266245-A	0.2655	5E-6		0.06	[0.033-0.087] unit decrease	Affymetrix, Illumina, Perlegen [6163759] (imputed)	N
606	chr6_cox_hap2	2838432	2838433	rs74618856	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs74618856-T	NR	3E-13		0.0210177	[0.015-0.027] unit decrease	Affymetrix [321169] (imputed)	N
606	chr6_cox_hap2	2838445	2838446	rs9266248	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs9266248-G	NR	5E-11		0.0206568	[0.014-0.027] unit decrease	Affymetrix [323858] (imputed)	N
606	chr6_cox_hap2	2838445	2838446	rs9266248	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs9266248-G	NR	6E-10		0.0194387	[0.013-0.026] unit decrease	Affymetrix [127266] (imputed)	N
606	chr6_cox_hap2	2838479	2838480	rs9266250	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs9266250-A	NR	5E-20		0.0288475	[0.023-0.035] unit increase	Affymetrix [323123] (imputed)	N
606	chr6_cox_hap2	2838534	2838535	rs9266253	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs9266253-G	NR	8E-10		0.021803	[0.015-0.029] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_cox_hap2	2838534	2838535	rs9266253	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs9266253-G	NR	6E-10		0.0219864	[0.015-0.029] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_cox_hap2	2838538	2838539	rs28694041	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs28694041-G	NR	4E-17		0.0237224	[0.018-0.029] unit decrease	Affymetrix [321016] (imputed)	N
606	chr6_cox_hap2	2838567	2838568	rs9266255	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6p21.33		rs9266255-G	0.51289	7E-12		0.0273638	[0.02-0.035] unit increase	NR [11722792] (imputed)	N
606	chr6_cox_hap2	2838567	2838568	rs9266255	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs9266255-A	NR	1E-9		0.0189485	[0.013-0.025] unit increase	Affymetrix [323858] (imputed)	N
606	chr6_cox_hap2	2838567	2838568	rs9266255	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs9266255-A	NR	2E-20		0.0284303	[0.022-0.034] unit decrease	Affymetrix [323123] (imputed)	N
606	chr6_cox_hap2	2838567	2838568	rs9266255	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	6p21.33	HLA-B	rs9266255-A	0.485918	3E-10		0.015893243	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
606	chr6_cox_hap2	2838573	2838574	rs9266257	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	6p21.33		rs9266257-G	0.332679	3E-14		0.0320363	[0.024-0.04] unit increase	NR [11722792] (imputed)	N
606	chr6_cox_hap2	2838573	2838574	rs9266257	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	6p21.33		rs9266257-G	0.332679	2E-18		0.036957	[0.029-0.045] unit increase	NR [11722792] (imputed)	N
606	chr6_cox_hap2	2838573	2838574	rs9266257	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	6p21.33	Intergenic	rs9266257-G	0.2867	3E-10		0.0158	[0.011-0.021] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
606	chr6_cox_hap2	2838573	2838574	rs9266257	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	6p21.33	Intergenic	rs9266257-C	0.6642	1E-12	(MTAG)	0.0175	[0.013-0.022] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
606	chr6_cox_hap2	2838768	2838769	rs9266271	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.33		rs9266271-T	0.645	8E-27				Affymetrix [10369434] (imputed)	N
606	chr6_cox_hap2	2838768	2838769	rs9266271	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs9266271-C	NR	6E-18		0.0254246	[0.02-0.031] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_cox_hap2	2838768	2838769	rs9266271	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs9266271-C	NR	6E-17		0.0246745	[0.019-0.03] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_cox_hap2	2838768	2838769	rs9266271	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs9266271-C	NR	1E-12		0.0209457	[0.015-0.027] unit decrease	Affymetrix [321016] (imputed)	N
606	chr6_cox_hap2	2838768	2838769	rs9266271	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs9266271-C	NR	3E-8		0.0177807	[0.011-0.024] unit decrease	Affymetrix [323123] (imputed)	N
606	chr6_cox_hap2	2838768	2838769	rs9266271	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs9266271-C	NR	2E-13		0.0220232	[0.016-0.028] unit increase	Affymetrix [321169] (imputed)	N
606	chr6_cox_hap2	2838769	2838770	rs62396273	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs62396273-T	NR	1E-15		0.0313037	[0.024-0.039] unit decrease	Affymetrix [321016] (imputed)	N
606	chr6_cox_hap2	2838769	2838770	rs62396273	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs62396273-T	NR	2E-8		0.023758	[0.015-0.032] unit decrease	Affymetrix [323123] (imputed)	N
606	chr6_cox_hap2	2838817	2838818	rs73390208	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	6p21.33		rs73390208-C	0.728652	1E-9		0.028278	[0.019-0.037] unit decrease	NR [11722792] (imputed)	N
606	chr6_cox_hap2	2838817	2838818	rs73390208	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs73390208-T	NR	2E-8		0.0177817	[0.012-0.024] unit decrease	Affymetrix [321016] (imputed)	N
606	chr6_cox_hap2	2838852	2838853	rs4947311	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hypothyroidism	1,114 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	6p21.33		rs4947311-T	0.840267659	5E-8		0.32545814	[0.21-0.44] unit increase	Illumina [13429045] (imputed)	N
606	chr6_cox_hap2	2838852	2838853	rs4947311	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs4947311-T	NR	3E-8		0.0173305	[0.011-0.023] unit increase	Affymetrix [127266] (imputed)	N
606	chr6_cox_hap2	2838852	2838853	rs4947311	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	6p21.33	HLA-B	rs4947311-T	0.491335	1E-26		0.023138076	[0.019-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
606	chr6_cox_hap2	2838852	2838853	rs4947311	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	6p21.33	HLA-B	rs4947311-T	0.4917	6E-26		0.03719869	[0.03-0.044] unit decrease	Affymetrix [~ 2500000] (imputed)	N
606	chr6_cox_hap2	2838873	2838873	rs112261624	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p21.33	HLA-B	rs112261624-ATTG	0.126731	3E-11		0.025527913	[0.018-0.033] unit increase	Affymetrix [93095623] (imputed)	N
606	chr6_cox_hap2	2838909	2838910	rs2596474	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs2596474-G	NR	1E-8		0.0167607	[0.011-0.023] unit increase	Affymetrix [321169] (imputed)	N
606	chr6_cox_hap2	2838937	2838938	rs9405084	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs9405084-T	NR	1E-13		0.0243425	[0.018-0.031] unit decrease	Affymetrix [323123] (imputed)	N
606	chr6_cox_hap2	2838937	2838938	rs9405084	32488134	Auckland K	2020-06-02	Sci Rep	The Human Leukocyte Antigen Locus and Rheumatic Heart Disease Susceptibility in South Asians and Europeans.	Rheumatic heart disease	510 Northern Indian cases, 344 Northern Indian controls, 162 Fijian Indian cases, 147 Fijian Indian controls	150 European ancestry cases, 1,309 European ancestry controls	6p21.33	HLA-B	rs9405084-?		3E-6		1.36	[1.19-1.55]	Illumina [6925553] (imputed)	N
606	chr6_cox_hap2	2838937	2838938	rs9405084	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	Composite immunoglobulin trait (IgA/IgM)	14,183 Icelandic ancestry individuals	2,146 Swedish ancestry individuals	6p21.33	HLA-B	rs9405084-T	0.3546	8E-13		0.09	NR SD units decrease	Illumina [21568490] (imputed)	N
606	chr6_cox_hap2	2838958	2838959	rs9266276	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	6p21.33	NR	rs9266276-?	NR	1E-10		0.0815	[0.057-0.106] unit decrease	Illumina [at least 560000] (imputed)	N
606	chr6_cox_hap2	2838975	2838976	rs9378248	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6p21.33		rs9378248-G	0.658186	5E-12		0.0289275	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
606	chr6_cox_hap2	2838975	2838976	rs9378248	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to monounsaturated fatty acids	115,006 European ancestry individuals	NA	6p21.33		rs9378248-G	0.658178	1E-9		0.0253981	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
606	chr6_cox_hap2	2838975	2838976	rs9378248	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of monounsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	6p21.33		rs9378248-G	0.658178	5E-12		0.0287948	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
606	chr6_cox_hap2	2838975	2838976	rs9378248	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	6p21.33		rs9378248-G	0.658186	6E-9		0.0251651	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
606	chr6_cox_hap2	2838975	2838976	rs9378248	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6p21.33		rs9378248-G	0.658186	2E-15		0.0323775	[0.024-0.04] unit increase	NR [11722792] (imputed)	N
606	chr6_cox_hap2	2838975	2838976	rs9378248	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6p21.33		rs9378248-G	0.658186	3E-12		0.0285178	[0.021-0.036] unit increase	NR [11722792] (imputed)	N
606	chr6_cox_hap2	2838975	2838976	rs9378248	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6p21.33		rs9378248-G	0.658186	2E-15		0.0327076	[0.025-0.041] unit increase	NR [11722792] (imputed)	N
606	chr6_cox_hap2	2838975	2838976	rs9378248	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6p21.33		rs9378248-G	0.658186	5E-12		0.028241	[0.02-0.036] unit increase	NR [11722792] (imputed)	N
606	chr6_cox_hap2	2838975	2838976	rs9378248	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs9378248-A	NR	3E-12		0.0207417	[0.015-0.027] unit decrease	Affymetrix [321016] (imputed)	N
606	chr6_cox_hap2	2838975	2838976	rs9378248	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	6p21.33	HLA-B	rs9378248-G	0.657666	3E-54		0.0324826	[0.028-0.037] unit decrease	Affymetrix [NR] (imputed)	N
606	chr6_cox_hap2	2838975	2838976	rs9378248	31589552	Lind L	2019-10-07	Metab Syndr Relat Disord	Genome-Wide Association Study of the Metabolic Syndrome in UK Biobank.	Metabolic syndrome	291,107 European ancestry individuals	NA	6p21.33	HLA-B	rs9378248-A	0.339668	2E-10		0.0440684	[0.031-0.058] unit increase	Affymetrix [9463307] (imputed)	N
606	chr6_cox_hap2	2838975	2838976	rs9378248	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	6p21.33	Intergenic	rs9378248-A	0.386	7E-10	(MTAG)	0.0105	[0.0072-0.0138] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
606	chr6_cox_hap2	2838975	2838976	rs9378248	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6p21.33	Intergenic	rs9378248-A	0.3659	8E-10	(MTAG)	0.0086	[0.0059-0.0113] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
606	chr6_cox_hap2	2839299	2839300	rs9266277	35074870	Chia R	2022-02-01	Proc Natl Acad Sci U S A	Identification of genetic risk loci and prioritization of genes and pathways for myasthenia gravis: a genome-wide association study.	Myasthenia gravis	1,873 European ancestry cases, 36,370 European ancestry controls	7,412 European ancestry individuals	6p21.33		rs9266277-A	0.347	7E-10		1.29	[1.2-1.4]	Illumina [24006246] (imputed)	N
606	chr6_cox_hap2	2839719	2839720	rs116666910	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	6p21.33	HLA-B	rs116666910-A	0.042838	3E-36		0.07363684	[0.062-0.085] unit increase	Affymetrix [93095623] (imputed)	N
606	chr6_cox_hap2	2839749	2839750	rs2523590	35215271	Almandil NB	2022-01-27	Pharmaceuticals (Basel)	Integration of Transcriptome and Exome Genotyping Identifies Significant Variants with Autism Spectrum Disorder.	Autism spectrum disorder	70 Arab ancestry cases, 132 Arab ancestry controls	NA	6p21.33	NA	rs2523590-G	0.4059	2E-6		0.2661	[0.1511-0.4689]	Illumina [243345]	N
606	chr6_cox_hap2	2839749	2839750	rs2523590	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Anxiety	at least 23,606 European ancestry cases, at least 113,351 European ancestry controls	624,615 European ancestry cases, 1,310,854 European ancestry controls	6p21.33	XXbac, BPG248L24.12	rs2523590-T	0.3002	2E-17		0.020998826	[0.015-0.027] unit decrease	NR [9417325] (imputed)	N
606	chr6_cox_hap2	2839749	2839750	rs2523590	21051598	Pereyra F	2010-11-04	Science	The major genetic determinants of HIV-1 control affect HLA class I peptide presentation.	HIV-1 control	516 European cases, 1,196 European controls, 341 African American cases, 892 African American controls, 117 Hispanic cases, 560 Hispanic controls	NA	6p21.33	HLA-B	rs2523590-C	0.164	2E-13	(AA)	2.4	[NR]	Illumina [1384048] (imputed)	N
606	chr6_cox_hap2	2839863	2839864	rs2249935	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs2249935-A	NR	2E-11		0.02495	[0.018-0.032] unit decrease	Affymetrix [323858] (imputed)	N
606	chr6_cox_hap2	2839863	2839864	rs2249935	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs2249935-A	NR	2E-10		0.0236711	[0.016-0.031] unit decrease	Affymetrix [127266] (imputed)	N
606	chr6_cox_hap2	2839863	2839864	rs2249935	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs2249935-A	NR	6E-9		0.0213066	[0.014-0.028] unit increase	Affymetrix [323123] (imputed)	N
606	chr6_cox_hap2	2839863	2839864	rs2249935	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	6p21.33	HLA-B	rs2249935-A	0.226813	5E-14		0.022285966	[0.016-0.028] unit increase	Affymetrix [93095623] (imputed)	N
606	chr6_cox_hap2	2840019	2840020	rs2523589	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2523589-G	0.504575	7E-11		0.0266546	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
606	chr6_cox_hap2	2840019	2840020	rs2523589	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CDH7	5,355 Icelandic ancestry individuals	NA	6p21.33		rs2523589-G	0.4994	3E-12		0.128281	[0.092-0.164] unit increase	Illumina [7506463] (imputed)	N
606	chr6_cox_hap2	2840019	2840020	rs2523589	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs2523589-T	NR	4E-15		0.0220143	[0.017-0.028] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_cox_hap2	2840019	2840020	rs2523589	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs2523589-T	NR	5E-9		0.0182205	[0.012-0.024] unit increase	Affymetrix [323858] (imputed)	N
606	chr6_cox_hap2	2840019	2840020	rs2523589	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs2523589-T	NR	8E-14		0.0209932	[0.015-0.026] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_cox_hap2	2840019	2840020	rs2523589	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs2523589-T	NR	3E-10		0.0176998	[0.012-0.023] unit decrease	Affymetrix [321016] (imputed)	N
606	chr6_cox_hap2	2840019	2840020	rs2523589	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs2523589-T	NR	2E-15		0.0225538	[0.017-0.028] unit increase	Affymetrix [321169] (imputed)	N
606	chr6_cox_hap2	2840019	2840020	rs2523589	33608531	Wu Y	2021-02-19	Nat Commun	GWAS of peptic ulcer disease implicates Helicobacter pylori infection, other gastrointestinal disorders and depression.	Gastroesophageal reflux disease	54,854 European ancestry cases, 401,473 European ancestry controls	NA	6p21.33	NR	rs2523589-G	0.5	5E-13		0.95	[NR]	NR [8546065] (imputed)	N
606	chr6_cox_hap2	2840019	2840020	rs2523589	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (salicylic acid and derivatives)	61,583 European ancestry cases, 50,427 European ancestry controls	NA	6p21.33	HLA-B	rs2523589-T	0.495166	2E-8		0.044395193	[0.029-0.06] unit increase	Affymetrix [7288503] (imputed)	N
606	chr6_cox_hap2	2840019	2840020	rs2523589	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.33		rs2523589-T	0.5109049999999999	2E-54		1.0677866	[1.06-1.08]	Affymetrix, Illumina [9851866] (imputed)	N
606	chr6_cox_hap2	2840085	2840086	rs2523587	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	6p21.33	Intergenic	rs2523587-T	0.3377	3E-8	(MTAG)	0.0105	[0.0068-0.0142] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
606	chr6_cox_hap2	2840345	2840346	rs1811197	27157822	Hallberg P	2016-05-03	Lancet Diabetes Endocrinol	Genetic variants associated with antithyroid drug-induced agranulocytosis: a genome-wide association study in a European population.	Non-chemotherapy drug induced agranulocytosis	222 European ancestry cases, 12 cases, 5,170 European ancestry controls	NA	6p21.33	NR	rs1811197-?	NR	9E-13	(adjusted for rs114291795)	2.4	[1.89-3.06]	Illumina [9380034] (imputed)	N
606	chr6_cox_hap2	2840354	2840355	rs116812356	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	6p21.33	HLA-B	rs116812356-C	0.084787	1E-13		0.029957736	[0.022-0.038] unit increase	Affymetrix [93095623] (imputed)	N
606	chr6_cox_hap2	2840386	2840387	rs9378249	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p21.33	NR	rs9378249-T	0.936677	4E-192				Affymetrix, Illumina [17210439] (imputed)	N
606	chr6_cox_hap2	2840386	2840387	rs9378249	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	6p21.33	NR	rs9378249-T	0.935134	6E-196		0.116523	[0.11-0.12] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
606	chr6_cox_hap2	2840386	2840387	rs9378249	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	6p21.33	HLA-B	rs9378249-G	0.0655	1E-53		0.112675	[0.098-0.127] unit decrease	Affymetrix [~ 2500000] (imputed)	N
606	chr6_cox_hap2	2840386	2840387	rs9378249	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	6p21.33	HLA-B	rs9378249-G	0.0649	7E-35		0.08896168	[0.075-0.103] unit increase	Affymetrix [~ 2500000] (imputed)	N
606	chr6_cox_hap2	2840386	2840387	rs9378249	21254220	Jiang Y	2011-02-01	Genet Epidemiol	Propensity score-based nonparametric test revealing genetic variants underlying bipolar disorder.	Bipolar disorder	1,868 European ancestry cases, 2,938 European ancestry controls	NA	6p21.33	NR	rs9378249-?	NR	1E-8	(addtive)			Affymetrix [NR]	N
606	chr6_cox_hap2	2840408	2840409	rs2596477	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p21.33	NR	rs2596477-A	0.124	2E-14	(IFNAR2_of_CD20p)			Illumina [5084123] (imputed)	N
606	chr6_cox_hap2	2840427	2840428	rs116010992	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in IDL	115,082 European ancestry individuals	NA	6p21.33		rs116010992-G	0.944836	2E-8		0.0511498	[0.033-0.069] unit increase	NR [11722792] (imputed)	N
606	chr6_cox_hap2	2840427	2840428	rs116010992	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in IDL	115,082 European ancestry individuals	NA	6p21.33		rs116010992-G	0.944836	7E-9		0.0521223	[0.034-0.07] unit increase	NR [11722792] (imputed)	N
606	chr6_cox_hap2	2840427	2840428	rs116010992	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in IDL	115,082 European ancestry individuals	NA	6p21.33		rs116010992-G	0.944836	7E-9		0.0521034	[0.034-0.07] unit increase	NR [11722792] (imputed)	N
606	chr6_cox_hap2	2840442	2840443	rs28695590	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs28695590-C	NR	1E-9		0.0254929	[0.017-0.034] unit increase	Affymetrix [323858] (imputed)	N
606	chr6_cox_hap2	2840442	2840443	rs28695590	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs28695590-C	NR	2E-9		0.0254506	[0.017-0.034] unit increase	Affymetrix [127266] (imputed)	N
606	chr6_cox_hap2	2840580	2840581	rs2523583	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	6p21.33	XXbac-BPG248L24.12	rs2523583-A	0.7315	5E-7		0.0528	[0.032-0.073] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
606	chr6_cox_hap2	2840590	2840591	rs7767033	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p21.33		rs7767033-C	0.911783	6E-11		0.0460216	[0.032-0.06] unit decrease	NR [11722792] (imputed)	N
606	chr6_cox_hap2	2840590	2840591	rs7767033	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p21.33		rs7767033-C	0.911783	3E-10		0.0446058	[0.031-0.058] unit increase	NR [11722792] (imputed)	N
606	chr6_cox_hap2	2841202	2841203	rs2523579	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs2523579-T	NR	5E-20		0.0268404	[0.021-0.033] unit increase	Affymetrix [321016] (imputed)	N
606	chr6_cox_hap2	2841202	2841203	rs2523579	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs2523579-T	NR	6E-23		0.0313944	[0.025-0.038] unit increase	Affymetrix [323123] (imputed)	N
606	chr6_cox_hap2	2841227	2841228	rs2523578	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.33	XXbac-BPG248L24.12	rs2523578-A	0.735	6E-12		0.0561	[0.04-0.072] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
606	chr6_cox_hap2	2841441	2841442	rs9266289	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.33	NR	rs9266289-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
606	chr6_cox_hap2	2841571	2841572	rs7772305	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs7772305-G	NR	1E-17		0.0277083	[0.021-0.034] unit decrease	Affymetrix [321016] (imputed)	N
606	chr6_cox_hap2	2841571	2841572	rs7772305	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs7772305-G	NR	4E-10		0.0221253	[0.015-0.029] unit decrease	Affymetrix [323123] (imputed)	N
606	chr6_cox_hap2	2841673	2841674	rs2523573	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	6p21.33	NR	rs2523573-C	0.083499	2E-9		0.077368595	[0.052-0.103] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
606	chr6_cox_hap2	2841673	2841674	rs2523573	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	6p21.33	NR	rs2523573-C	0.083499	3E-11		0.07532035	[0.053-0.098] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
606	chr6_cox_hap2	2841714	2841715	rs114029601	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p21.33		rs114029601-?	NR	2E-13		0.0823935	[0.06-0.104] unit increase	Affymetrix [20259828] (imputed)	N
606	chr6_cox_hap2	2841714	2841715	rs114029601	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs114029601-T	0.024	1E-175	(alpha-2-macroglobulin receptor-associated protein, LRPAP1.3640.14.3)	2.11	[1.97-2.25] unit increase	Affymetrix [10572788] (imputed)	N
606	chr6_cox_hap2	2841714	2841715	rs114029601	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs114029601-T	0.024	1E-132	(alpha-2-macroglobulin receptor-associated protein, LRPAP1.8829.4.3)	1.88	[1.72-2.04] unit increase	Affymetrix [10572788] (imputed)	N
606	chr6_cox_hap2	2841777	2841778	rs7772614	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs7772614-A	NR	2E-17		0.0245966	[0.019-0.03] unit decrease	Affymetrix [319769] (imputed)	N
606	chr6_cox_hap2	2841777	2841778	rs7772614	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs7772614-A	NR	4E-16		0.0235888	[0.018-0.029] unit decrease	Affymetrix [319769] (imputed)	N
606	chr6_cox_hap2	2841777	2841778	rs7772614	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs7772614-A	NR	9E-15		0.0224619	[0.017-0.028] unit increase	Affymetrix [321016] (imputed)	N
606	chr6_cox_hap2	2841777	2841778	rs7772614	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs7772614-A	NR	3E-22		0.0306127	[0.024-0.037] unit increase	Affymetrix [323123] (imputed)	N
606	chr6_cox_hap2	2841777	2841778	rs7772614	32358547	Persyn E	2020-05-01	Nat Commun	Genome-wide association study of MRI markers of cerebral small vessel disease in 42,310 participants.	White matter integrity (mean diffusivity)	17,467 European ancestry individuals	NA	6p21.33	HLA-B, HLA-S	rs7772614-A	0.379354	8E-10		0.272022	[0.19-0.36] unit decrease	Affymetrix [NR] (imputed)	N
606	chr6_cox_hap2	2841820	2841821	rs2428493	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.33		rs2428493-C	0.59	3E-29				Affymetrix [10369434] (imputed)	N
606	chr6_cox_hap2	2841820	2841821	rs2428493	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p21.33		rs2428493-C	0.59	2E-11				Affymetrix [10369434] (imputed)	N
606	chr6_cox_hap2	2841820	2841821	rs2428493	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs2428493-A	NR	1E-8		0.0162701	[0.011-0.022] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_cox_hap2	2841820	2841821	rs2428493	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs2428493-A	NR	2E-8		0.0160422	[0.01-0.022] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_cox_hap2	2841820	2841821	rs2428493	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs2428493-A	NR	3E-8		0.0172826	[0.011-0.023] unit decrease	Affymetrix [323123] (imputed)	N
606	chr6_cox_hap2	2841820	2841821	rs2428493	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs2428493-A	NR	4E-8		0.0158728	[0.01-0.022] unit increase	Affymetrix [321169] (imputed)	N
606	chr6_cox_hap2	2841976	2841977	rs2596544	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs2596544-A	NR	4E-11		0.0250182	[0.018-0.032] unit decrease	Affymetrix [323858] (imputed)	N
606	chr6_cox_hap2	2841976	2841977	rs2596544	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs2596544-A	NR	2E-10		0.0239529	[0.017-0.031] unit decrease	Affymetrix [127266] (imputed)	N
606	chr6_cox_hap2	2841976	2841977	rs2596544	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.33	NR	rs2596544-?	NR	7E-14				Affymetrix [~ 8270000] (imputed)	N
606	chr6_cox_hap2	2842050	2842051	rs2428491	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs2428491-T	NR	7E-9		0.018086	[0.012-0.024] unit decrease	Affymetrix [323123] (imputed)	N
606	chr6_cox_hap2	2842050	2842051	rs2428491	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs2428491-T	NR	3E-8		0.0160184	[0.01-0.022] unit increase	Affymetrix [321169] (imputed)	N
606	chr6_cox_hap2	2842151	2842152	rs76518703	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.33		rs76518703-G	0.051012999999999975	4E-21		1.0960608	[1.08-1.11]	Affymetrix, Illumina [9851866] (imputed)	N
606	chr6_cox_hap2	2842163	2842164	rs62396280	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p21.33		rs62396280-G	0.938983	7E-13		0.0589889	[0.043-0.075] unit increase	NR [11722792] (imputed)	N
606	chr6_cox_hap2	2842163	2842164	rs62396280	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p21.33		rs62396280-G	0.938983	3E-13		0.0597272	[0.044-0.076] unit increase	NR [11722792] (imputed)	N
606	chr6_cox_hap2	2842163	2842164	rs62396280	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	6p21.33		rs62396280-G	0.938983	5E-13		0.0604292	[0.044-0.077] unit increase	NR [11722792] (imputed)	N
606	chr6_cox_hap2	2842328	2842329	rs2596547	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MICB	5,339 Icelandic ancestry individuals	NA	6p21.33		rs2596547-T	0.08274	1E-46		0.447301	[0.39-0.51] unit decrease	Illumina [7506463] (imputed)	N
606	chr6_cox_hap2	2842377	2842378	rs2523571	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Sjogren's syndrome	1,296 European ancestry cases, 482,717 European ancestry controls, 303 East Asian ancestry cases, 175,599 East Asian ancestry controls	NA	6p21.33		rs2523571-A	NR	6E-28		0.709	[0.58-0.84] unit increase	Affymetrix, Illumina [25844664] (imputed)	N
606	chr6_cox_hap2	2842420	2842421	rs2523570	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs2523570-T	NR	1E-9		0.0207915	[0.014-0.027] unit increase	Affymetrix [321114] (imputed)	N
606	chr6_cox_hap2	2842420	2842421	rs2523570	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	HLA-B, XXbac-BPG248L24.12, HLA-C, DHFRP2, RNU6-283P	rs2523570-T	0.1732125	3E-22	(EA, MHC class I polypeptide-related sequence A)	0.5698	[0.46-0.68] unit increase	Affymetrix [509946]	N
606	chr6_cox_hap2	2842701	2842702	rs2523567	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	DHFRP2	rs2523567-G	NR	1E-8		0.019102	[0.013-0.026] unit decrease	Affymetrix [321169] (imputed)	N
606	chr6_cox_hap2	2843304	2843305	rs2523562	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	6p21.33		rs2523562-C	0.75	5E-23				Affymetrix [10369434] (imputed)	N
606	chr6_cox_hap2	2843304	2843305	rs2523562	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	6p21.33	DHFRP2	rs2523562-T	0.248438	2E-53		0.043959104	[0.038-0.05] unit decrease	Affymetrix [93095623] (imputed)	N
606	chr6_cox_hap2	2843304	2843305	rs2523562	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p21.33	NR	rs2523562-T	0.231793	1E-216				Affymetrix, Illumina [23467995] (imputed)	N
606	chr6_cox_hap2	2843304	2843305	rs2523562	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	6p21.33	NR	rs2523562-T	0.245752	2E-218		0.068474	[0.064-0.073] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
606	chr6_cox_hap2	2843382	2843383	rs2523561	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	6p21.33		rs2523561-T	0.0841863	4E-21		0.22455621	[0.18-0.27] unit increase	Illumina [13427135] (imputed)	N
606	chr6_cox_hap2	2843474	2843475	rs9266329	34642315	Ferreiro-Iglesias A	2021-10-12	Nat Commun	Germline determinants of humoral immune response to HPV-16 protect against oropharyngeal cancer.	Human papilloma virus 16 positive oropharyngeal cancer	1,078 European ancestry cases, 5,256 European ancestry controls	NA	6p21.33		rs9266329-A	NR	1E-12		0.6064		Illumina [7574753] (imputed)	N
606	chr6_cox_hap2	2843655	2843656	rs2523559	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	145,505 East Asian ancestry individuals	NA	6p21.33		rs2523559-A	0.856226	1E-8		0.0270292	[0.018-0.036] unit decrease	Illumina [13477770] (imputed)	N
606	chr6_cox_hap2	2843723	2843724	rs2523558	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	DHFRP2	rs2523558-G	NR	5E-17		0.0239075	[0.018-0.029] unit decrease	Affymetrix [319769] (imputed)	N
606	chr6_cox_hap2	2843723	2843724	rs2523558	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	DHFRP2	rs2523558-G	NR	1E-15		0.022827	[0.017-0.028] unit decrease	Affymetrix [319769] (imputed)	N
606	chr6_cox_hap2	2843723	2843724	rs2523558	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	DHFRP2	rs2523558-G	NR	2E-18		0.025264	[0.02-0.031] unit decrease	Affymetrix [321169] (imputed)	N
606	chr6_cox_hap2	2843939	2843940	rs2523557	26190474	Dai Y	2015-07-20	Sci Rep	Performance of genetic risk factors in prediction of trichloroethylene induced hypersensitivity syndrome.	Trichloroethylene-induced hypersensitivity syndrome	98 Han Chinese ancestry cases, 98 Han Chinese ancestry trichloroethylene-tolerant controls	Up to 74 Han Chinese ancestry cases, up to 1,661 Han Chinese ancestry trichloroethylene-tolerant controls	6p21.33	HLA-B, MICA	rs2523557-C	0.13	9E-35		7.33	[5.34-10.07]	Illumina [1392644]	N
606	chr6_cox_hap2	2844182	2844183	rs4959062	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	DHFRP2	rs4959062-G	NR	7E-12		0.0197814	[0.014-0.025] unit decrease	Affymetrix [321016] (imputed)	N
606	chr6_cox_hap2	2844198	2844199	rs9266344	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antithrombotic agents)	67,653 European ancestry cases, 85,986 European ancestry controls, 54,220 East Asian ancestry cases, 124,506 East Asian ancestry controls	NA	6p21.33		rs9266344-C	NR	1E-15		0.0792	[0.06-0.099] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
606	chr6_cox_hap2	2844380	2844381	rs4959063	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol minus HDL-C levels	115,082 European ancestry individuals	NA	6p21.33		rs4959063-C	0.79261	4E-9		0.0298904	[0.02-0.04] unit decrease	NR [11722792] (imputed)	N
606	chr6_cox_hap2	2844380	2844381	rs4959063	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Remnant cholesterol (non-HDL, non-LDL -cholesterol)	115,082 European ancestry individuals	NA	6p21.33		rs4959063-C	0.79261	8E-10		0.0312509	[0.021-0.041] unit decrease	NR [11722792] (imputed)	N
606	chr6_cox_hap2	2844380	2844381	rs4959063	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in IDL	115,082 European ancestry individuals	NA	6p21.33		rs4959063-C	0.79261	2E-8		0.0277784	[0.018-0.037] unit decrease	NR [11722792] (imputed)	N
606	chr6_cox_hap2	2844380	2844381	rs4959063	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	6p21.33		rs4959063-C	0.79261	1E-9		0.0304695	[0.021-0.04] unit decrease	NR [11722792] (imputed)	N
606	chr6_cox_hap2	2844380	2844381	rs4959063	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	6p21.33		rs4959063-C	0.79261	2E-10		0.0327736	[0.023-0.043] unit decrease	NR [11722792] (imputed)	N
606	chr6_cox_hap2	2844380	2844381	rs4959063	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	6p21.33		rs4959063-C	0.79261	2E-10		0.0324692	[0.022-0.042] unit decrease	NR [11722792] (imputed)	N
606	chr6_cox_hap2	2844380	2844381	rs4959063	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small LDL particles	115,082 European ancestry individuals	NA	6p21.33		rs4959063-C	0.79261	1E-8		0.0290147	[0.019-0.039] unit decrease	NR [11722792] (imputed)	N
606	chr6_cox_hap2	2844380	2844381	rs4959063	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium LDL particles	115,082 European ancestry individuals	NA	6p21.33		rs4959063-C	0.79261	2E-8		0.0287151	[0.019-0.039] unit decrease	NR [11722792] (imputed)	N
606	chr6_cox_hap2	2844380	2844381	rs4959063	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large LDL particles	115,082 European ancestry individuals	NA	6p21.33		rs4959063-C	0.79261	6E-10		0.0315332	[0.022-0.042] unit decrease	NR [11722792] (imputed)	N
606	chr6_cox_hap2	2844380	2844381	rs4959063	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of LDL particles	115,082 European ancestry individuals	NA	6p21.33		rs4959063-C	0.79261	1E-9		0.0312676	[0.021-0.041] unit decrease	NR [11722792] (imputed)	N
606	chr6_cox_hap2	2844380	2844381	rs4959063	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium VLDL	115,082 European ancestry individuals	NA	6p21.33		rs4959063-C	0.79261	2E-9		0.0304401	[0.021-0.04] unit decrease	NR [11722792] (imputed)	N
606	chr6_cox_hap2	2844380	2844381	rs4959063	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in VLDL	115,082 European ancestry individuals	NA	6p21.33		rs4959063-C	0.79261	7E-11		0.0332965	[0.023-0.043] unit decrease	NR [11722792] (imputed)	N
606	chr6_cox_hap2	2844380	2844381	rs4959063	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	6p21.33		rs4959063-C	0.79261	1E-8		0.0281437	[0.018-0.038] unit decrease	NR [11722792] (imputed)	N
606	chr6_cox_hap2	2844380	2844381	rs4959063	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	6p21.33		rs4959063-C	0.79261	2E-10		0.0323143	[0.022-0.042] unit decrease	NR [11722792] (imputed)	N
606	chr6_cox_hap2	2844380	2844381	rs4959063	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein B levels	115,082 European ancestry individuals	NA	6p21.33		rs4959063-C	0.79261	1E-9		0.0311161	[0.021-0.041] unit decrease	NR [11722792] (imputed)	N
606	chr6_cox_hap2	2844511	2844512	rs2523554	33649182	Penova M	2021-03-01	Proc Natl Acad Sci U S A	Genome wide association study of HTLV-1-associated myelopathy/tropical spastic paraparesis in the Japanese population.	HTLV-1 associated myelopathy	731 Japanese ancestry cases, 846 Japanese ancestry controls	NA	6p21.33		rs2523554-C	0.11	3E-8		1.83	[1.48-2.27]	Illumina [126394]	N
606	chr6_cox_hap2	2844567	2844569	rs9279167	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	6p21.33	DHFRP2	rs9279167-G	0.2829	2E-24		0.04621161	[0.037-0.055] unit decrease	Affymetrix [~ 2500000] (imputed)	N
606	chr6_cox_hap2	2844636	2844637	rs2523552	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	6p21.33	DHFRP2	rs2523552-T	0.2263	1E-75		0.07846555	[0.07-0.087] unit decrease	Affymetrix [~ 2500000] (imputed)	N
606	chr6_cox_hap2	2844659	2844660	rs2844583	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	High density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	6p21.33	HLA-B, MICA	rs2844583-?		9E-10		0.0428	[0.029-0.057] unit increase	Illumina [31500000] (imputed)	N
606	chr6_cox_hap2	2845207	2845208	rs2844582	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	DHFRP2	rs2844582-T	NR	2E-10		0.022422	[0.016-0.029] unit increase	Affymetrix [321169] (imputed)	N
606	chr6_cox_hap2	2845208	2845209	rs2523548	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6p21.33	DHFRP2	rs2523548-A	0.433296	1E-28		0.029001132	[0.024-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
606	chr6_cox_hap2	2845420	2845421	rs9266359	25249183	Lu X	2014-09-23	Hum Mol Genet	Genome-wide association study in Chinese identifies novel loci for blood pressure and hypertension.	Systolic blood pressure	11,816 Han Chinese ancestry individuals	69,146 Han Chinese ancestry individuals	6p21.33	HLA-B	rs9266359-C	0.6	7E-6		0.44	[0.24-0.64] unit increase	Affymetrix, Illumina [2485448] (imputed)	N
606	chr6_cox_hap2	2845420	2845421	rs9266359	25249183	Lu X	2014-09-23	Hum Mol Genet	Genome-wide association study in Chinese identifies novel loci for blood pressure and hypertension.	Diastolic blood pressure	11,816 Han Chinese ancestry individuals	69,146 Han Chinese ancestry individuals	6p21.33	HLA-B	rs9266359-C	0.6	2E-7		0.29	[0.17-0.41] unit increase	Affymetrix, Illumina [2485448] (imputed)	N
606	chr6_cox_hap2	2845600	2845601	rs9266361	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (salicylic acid and derivatives)	41,461 East Asian ancestry cases, 137,265 East Asian ancestry controls	NA	6p21.33		rs9266361-T	0.812543574	5E-17		0.09066886	[0.07-0.112] unit decrease	Illumina [13429980] (imputed)	N
606	chr6_cox_hap2	2845600	2845601	rs9266361	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	6p21.33		rs9266361-T	0.812543574	4E-14		0.07905273	[0.059-0.1] unit decrease	Illumina [13134967] (imputed)	N
606	chr6_cox_hap2	2845600	2845601	rs9266361	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antithrombotic agents)	54,220 East Asian ancestry cases, 124,506 East Asian ancestry controls	NA	6p21.33		rs9266361-T	0.812543574	2E-16		0.08336314	[0.064-0.103] unit decrease	Illumina [13429980] (imputed)	N
606	chr6_cox_hap2	2845600	2845601	rs9266361	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	DHFRP2	rs9266361-T	NR	1E-16		0.026028	[0.02-0.032] unit decrease	Affymetrix [323123] (imputed)	N
606	chr6_cox_hap2	2845600	2845601	rs9266361	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.33		rs9266361-T	0.37995999999999996	5E-8		1.0236442	[1.01-1.03]	Affymetrix, Illumina [9851866] (imputed)	N
606	chr6_cox_hap2	2845601	2845602	rs2523546	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Squamous cell lung carcinoma	8,350 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	6p21.33	NR	rs2523546-A	NR	9E-8		1.24	[1.14-1.34]	NR [NR] (imputed)	N
606	chr6_cox_hap2	2845776	2845777	rs2428490	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	DHFRP2	rs2428490-A	NR	5E-10		0.0232656	[0.016-0.031] unit decrease	Affymetrix [127266] (imputed)	N
606	chr6_cox_hap2	2845784	2845785	rs140949683	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GZMB	5,361 Icelandic ancestry individuals	NA	6p21.33		rs140949683-G	0.1074	3E-33		0.361549	[0.3-0.42] unit increase	Illumina [7506463] (imputed)	N
606	chr6_cox_hap2	2846125	2846126	rs62395421	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	6p21.33	RNU6-283P	rs62395421-A	0.0803	2E-15		0.05211951	[0.039-0.065] unit decrease	Affymetrix [~ 2500000] (imputed)	N
606	chr6_cox_hap2	2846644	2846645	rs2844578	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	DHFRP2	rs2844578-C	NR	3E-11		0.0246412	[0.017-0.032] unit decrease	Affymetrix [323858] (imputed)	N
606	chr6_cox_hap2	2847546	2847547	rs6457402	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	DHFRP2	rs6457402-T	NR	1E-11		0.0242388	[0.017-0.031] unit decrease	Affymetrix [321016] (imputed)	N
606	chr6_cox_hap2	2847627	2847628	rs2844575	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2844575-T	0.536322	3E-9		0.0243122	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
606	chr6_cox_hap2	2847627	2847628	rs2844575	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	6p21.33		rs2844575-T	0.536	2E-12				Affymetrix [10369434] (imputed)	N
606	chr6_cox_hap2	2847627	2847628	rs2844575	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs2844575-T	0.536	4E-31				Affymetrix [10369434] (imputed)	N
606	chr6_cox_hap2	2847627	2847628	rs2844575	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.33		rs2844575-T	0.536	2E-53				Affymetrix [10369434] (imputed)	N
606	chr6_cox_hap2	2847627	2847628	rs2844575	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	DHFRP2	rs2844575-C	NR	1E-11		0.0207917	[0.015-0.027] unit decrease	Affymetrix [323123] (imputed)	N
606	chr6_cox_hap2	2848018	2848019	rs17193122	26151496	Chen PL	2015-07-07	Nat Commun	Genetic determinants of antithyroid drug-induced agranulocytosis by human leukocyte antigen genotyping and genome-wide association study.	Thionamide-induced agranulocytosis in Graves' disease	21 East Asian ancestry cases with agranulocytosis, 662 East Asian ancestry cases without agranulocytosis	21 East Asian ancestry cases with agranulocytosis, 546 East Asian ancestry cases without agranulocytosis	6p21.33	HLA-B*38:02	rs17193122-A	0.047	4E-27	(trend)	9.59	[5.78-15.90] (allelic)	Affymetrix [522980]	N
606	chr6_cox_hap2	2848473	2848474	rs57989216	31219150	Ekenberg C	2019-06-13	J Infect Dis	Single nucleotide polymorphisms in HLA alleles are associated with HIV-1 viral load in demographically diverse, ART-naive participants from the START trial.	Pre-treatment viral load in HIV-1 infection	1,398 European ancestry individuals, 572 Black individuals, 418 Hispanic individuals, 13 Asian ancestry individuals, 39 individuals	NA	6p21.33	HLA-B, MIR6891	rs57989216-A	0.053	7E-13		0.4	[0.28-0.52] unit decrease	Affymetrix [339439]	N
606	chr6_cox_hap2	2848583	2848584	rs2922994	25569183	Vijai J	2015-01-08	Nat Commun	A genome-wide association study of marginal zone lymphoma shows association to the HLA region.	Marginal zone lymphoma	825 European ancestry cases, 6,221 European ancestry controls	456 European ancestry cases, 906 European ancestry controls	6p21.33	HLA-B, TCF19	rs2922994-G	0.113	2E-9		1.64	[1.39-1.92]	Illumina [611856]	N
606	chr6_cox_hap2	2848679	2848680	rs146683910	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Iritis	2,616 European ancestry cases, 478,126 European ancestry controls, 110 East Asian ancestry cases, 175,543 East Asian ancestry controls	NA	6p21.33		rs146683910-T	NR	5E-191		1.8349	[1.71-1.96] unit increase	Affymetrix, Illumina [25844196] (imputed)	N
606	chr6_cox_hap2	2848782	2848783	rs7743761	20062062	Reveille JD	2010-01-10	Nat Genet	Genome-wide association study of ankylosing spondylitis identifies non-MHC susceptibility loci.	Ankylosing spondylitis	2,053 European ancestry cases, 5,140 European ancestry controls	898 European ancestry cases, 1,518 European ancestry controls	6p21.33	MHC	rs7743761-?	NR	5E-304				Illumina [288662]	N
606	chr6_cox_hap2	2849100	2849101	rs9266406	23001997	Hou S	2012-12-06	Arthritis Rheum	Identification of a susceptibility locus in STAT4 for Behcet's disease in Han Chinese in a genome-wide association study.	Behcet's disease	147 Han Chinese ancestry cases, 951 Han Chinese ancestry controls	554 Han Chinese ancestry cases, 1,159 Han Chinese ancestry controls	6p21.33	MICA, DHFRP2, MICB	rs9266406-?	.40	2E-10		2.29	[1.77-2.95]	Affymetrix [661736]	N
606	chr6_cox_hap2	2849830	2849831	rs2853989	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of granulocytes	170,223 European ancestry individuals	NA	6p21.33	DHFRP2, RNU6-283P	rs2853989-G	0.3405	3E-10		0.02321877	[0.016-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
606	chr6_cox_hap2	2849891	2849892	rs2922996	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TEK	5,362 Icelandic ancestry individuals	NA	6p21.33		rs2922996-C	0.4661	1E-15		0.150071	[0.11-0.19] unit decrease	Illumina [7506463] (imputed)	N
606	chr6_cox_hap2	2849891	2849892	rs2922996	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Angiopoietin-1 receptor levels	21,758 European ancestry individuals	9,173 individuals	6p21.33		rs2922996-C	0.46	2E-101		0.1892	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
606	chr6_cox_hap2	2849895	2849896	rs9266428	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	6p21.33	DHFRP2, RNU6-283P	rs9266428-A	0.1804	9E-36		0.05778517	[0.049-0.067] unit increase	Affymetrix [~ 2500000] (imputed)	N
606	chr6_cox_hap2	2849895	2849896	rs9266428	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	6p21.33	DHFRP2, RNU6-283P	rs9266428-A	0.1804	3E-36		0.05807499	[0.049-0.067] unit increase	Affymetrix [~ 2500000] (imputed)	N
606	chr6_cox_hap2	2850757	2850758	rs9266444	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	142,940 East Asian ancestry individuals	NA	6p21.33	NR	rs9266444-A	0.237855	2E-10		0.029197	[0.02-0.038] SD units increase	Affymetrix, Illumina [16289021] (imputed)	N
606	chr6_cox_hap2	2851010	2851011	rs9501574	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	RNU6-283P	rs9501574-C	NR	1E-8		0.023019	[0.015-0.031] unit decrease	Affymetrix [323123] (imputed)	N
606	chr6_cox_hap2	2851510	2851511	rs2853986	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	RNU6-283P	rs2853986-C	NR	8E-20		0.0399121	[0.031-0.048] unit decrease	Affymetrix [323858] (imputed)	N
606	chr6_cox_hap2	2851510	2851511	rs2853986	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	RNU6-283P	rs2853986-C	NR	7E-18		0.037756	[0.029-0.046] unit decrease	Affymetrix [127266] (imputed)	N
606	chr6_cox_hap2	2852742	2852743	rs2844559	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	AL671883.1	rs2844559-T	NR	2E-16		0.0350697	[0.027-0.043] unit increase	Affymetrix [323123] (imputed)	N
606	chr6_cox_hap2	2852825	2852826	rs9266490	24326010	Xavier JM	2013-12-10	Ann Rheum Dis	FUT2: filling the gap between genes and environment in Behcet's disease?	Behcet's disease	292 Iranian ancestry cases, 294 Iranian ancestry controls	684 Iranian ancestry cases, 532 Iranian ancestry controls, 1,215 Turkish ancestry cases, 1,278 Turkish ancestry controls	6p21.33	HLA-B	rs9266490-G	0.279	2E-44	(Greater Middle Eastern)	2.73	[2.35-3.17]	Affymetrix [868254]	N
606	chr6_cox_hap2	2853576	2853577	rs2263321	30566020	Fukaya E	2018-12-01	Circulation	Clinical and Genetic Determinants of Varicose Veins.	Varicose veins	9,577 British ancestry cases, 327,959 British ancestry controls	NA	6p21.33	NR	rs2263321-A	0.33	8E-9		0.091	[0.06-0.122] unit decrease	Affymetrix [10972371] (imputed)	N
606	chr6_cox_hap2	2854161	2854162	rs9266520	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	AL671883.1	rs9266520-C	NR	6E-10		0.0193551	[0.013-0.025] unit increase	Affymetrix [323858] (imputed)	N
606	chr6_cox_hap2	2854161	2854162	rs9266520	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	AL671883.1	rs9266520-C	NR	1E-8		0.0177737	[0.012-0.024] unit increase	Affymetrix [127266] (imputed)	N
606	chr6_cox_hap2	2854323	2854324	rs9501380	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	AL671883.1	rs9501380-A	NR	4E-8		0.0310676	[0.02-0.042] unit decrease	Affymetrix [321016] (imputed)	N
606	chr6_cox_hap2	2854438	2854439	rs2523517	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	6p21.33	FGFR3P1	rs2523517-A	0.3597	3E-17		0.0314362	[0.024-0.039] unit increase	Affymetrix [~ 2500000] (imputed)	N
606	chr6_cox_hap2	2854554	2854555	rs2523515	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	6p21.33	FGFR3P1	rs2523515-A	0.3451	6E-13		0.02824211	[0.021-0.036] unit decrease	Affymetrix [~ 2500000] (imputed)	N
606	chr6_cox_hap2	2854822	2854823	rs9501583	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.33		rs9501583-C	0.811	3E-18				Affymetrix [10369434] (imputed)	N
606	chr6_cox_hap2	2854845	2854846	rs5013221	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.33		rs5013221-C	0.371	1E-26				Affymetrix [10369434] (imputed)	N
606	chr6_cox_hap2	2855151	2855152	rs2523644	30226566	Yamada Y	2018-09-04	Int J Mol Med	Identification of 13 novel susceptibility loci for early-onset myocardial infarction, hypertension, or chronic kidney disease.	Myocardial infarction	1,152 Japanese ancestry cases, 5,774 Japanese ancestry controls	NA	6p21.33	Intergenic	rs2523644-G		5E-7		1.49		Illumina [31245]	N
606	chr6_cox_hap2	2855448	2855449	rs2844551	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	AL671883.1	rs2844551-G	NR	2E-9		0.0207536	[0.014-0.028] unit decrease	Affymetrix [323123] (imputed)	N
606	chr6_cox_hap2	2857572	2857573	rs116488202	25200001	Robinson PC	2014-09-08	Arthritis Rheumatol	Genetic dissection of acute anterior uveitis reveals similarities and differences in associations observed with ankylosing spondylitis.	Acute anterior uveitis (with or without ankylosing spondylitis)	238 European ancestry primary acute anterior uveitis cases, 1,199 European ancestry cases with acute anterior uveitis and ankylosing spondylitis, 9,564 European ancestry controls	NR	6p21.33	HLA-B	rs116488202-?	NR	1E-300		16.8	[15.0-18.7]	Illumina [at least 106525] (imputed)	N
606	chr6_cox_hap2	2857572	2857573	rs116488202	23749187	Cortes A	2013-07-01	Nat Genet	Identification of multiple risk variants for ankylosing spondylitis through high-density genotyping of immune-related loci.	Ankylosing spondylitis	9,069 European ancestry cases, 1,550 East Asian ancestry cases, 13,578 European ancestry controls, 1,567 East Asian ancestry controls	NA	6p21.33	HLA-B*27	rs116488202-?	NR	1E-100	(EA)	46.0		Illumina [128935]	N
606	chr6_cox_hap2	2858523	2858524	rs9266613	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.33		rs9266613-T	0.805	8E-22				Affymetrix [10369434] (imputed)	N
606	chr6_cox_hap2	2858824	2858825	rs9266618	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	FGFR3P1	rs9266618-C	NR	4E-9		0.0286873	[0.019-0.038] unit decrease	Affymetrix [319769] (imputed)	N
606	chr6_cox_hap2	2858824	2858825	rs9266618	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	FGFR3P1	rs9266618-C	NR	6E-9		0.0284984	[0.019-0.038] unit decrease	Affymetrix [319769] (imputed)	N
606	chr6_cox_hap2	2858824	2858825	rs9266618	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	FGFR3P1	rs9266618-C	NR	2E-8		0.0280195	[0.018-0.038] unit decrease	Affymetrix [321169] (imputed)	N
606	chr6_cox_hap2	2859103	2859104	rs2523627	31375628	Tengvall K	2019-08-02	Proc Natl Acad Sci U S A	Molecular mimicry between Anoctamin 2 and Epstein-Barr virus nuclear antigen 1 associates with multiple sclerosis risk.	Anti-anoctamin 2 antibody levels	11,936 European ancestry individuals	NA	6p21.33	NR	rs2523627-C	NR	9E-6		0.05	[0.026-0.074] unit increase	Illumina [615763]	N
606	chr6_cox_hap2	2859215	2859216	rs4959072	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	FGFR3P1	rs4959072-C	NR	9E-10		0.0233595	[0.016-0.031] unit decrease	Affymetrix [323123] (imputed)	N
606	chr6_cox_hap2	2859260	2859261	rs6909636	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	FGFR3P1	rs6909636-A	NR	1E-8		0.018048	[0.012-0.024] unit decrease	Affymetrix [323123] (imputed)	N
606	chr6_cox_hap2	2859282	2859283	rs2442736	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	FGFR3P1	rs2442736-C	NR	2E-9		0.0200243	[0.014-0.027] unit decrease	Affymetrix [319769] (imputed)	N
606	chr6_cox_hap2	2859282	2859283	rs2442736	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	FGFR3P1	rs2442736-C	NR	1E-10		0.0237826	[0.017-0.031] unit decrease	Affymetrix [323858] (imputed)	N
606	chr6_cox_hap2	2859282	2859283	rs2442736	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	FGFR3P1	rs2442736-C	NR	5E-9		0.0194468	[0.013-0.026] unit decrease	Affymetrix [319769] (imputed)	N
606	chr6_cox_hap2	2859282	2859283	rs2442736	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	FGFR3P1	rs2442736-C	NR	8E-10		0.022647	[0.015-0.03] unit decrease	Affymetrix [127266] (imputed)	N
606	chr6_cox_hap2	2859314	2859315	rs2442735	27668658	Iotchkova V	2016-11-01	Nat Genet	Discovery and refinement of genetic loci associated with cardiometabolic risk using dense imputation maps.	Cardiometabolic and hematological traits	up to 35,981 European ancestry individuals	up to 102,505 European ancestry individuals	6p21.33	HLA-B	rs2442735-G		2E-46	(WBC)	0.01	[0.008-0.012] unit decrease	Affymetrix, Illumina [17000000] (imputed)	N
606	chr6_cox_hap2	2859483	2859484	rs9266629	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	6p21.33	NR	rs9266629-?	NR	4E-9				Affymetrix [~ 8270000] (imputed)	N
606	chr6_cox_hap2	2859483	2859484	rs9266629	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	6p21.33	NR	rs9266629-?		5E-11	(SFTPD)	0.2699	[NR] unit increase	Illumina [NR]	N
606	chr6_cox_hap2	2859483	2859484	rs9266629	23144326	Kim DK	2012-11-09	Am J Respir Crit Care Med	Genome-wide association analysis of blood biomarkers in chronic obstructive pulmonary disease.	Chronic obstructive pulmonary disease-related biomarkers	Up to 1,951 European ancestry smokers	NA	6p21.33	FGFR3P	rs9266629-C	0.21	4E-10	(SP-D)			Illumina [588352]	N
606	chr6_cox_hap2	2859638	2859639	rs9266634	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	FGFR3P1	rs9266634-A	NR	2E-15		0.0224814	[0.017-0.028] unit decrease	Affymetrix [319769] (imputed)	N
606	chr6_cox_hap2	2859638	2859639	rs9266634	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	FGFR3P1	rs9266634-A	NR	2E-8		0.0175518	[0.011-0.024] unit decrease	Affymetrix [323858] (imputed)	N
606	chr6_cox_hap2	2859638	2859639	rs9266634	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	FGFR3P1	rs9266634-A	NR	3E-14		0.0215569	[0.016-0.027] unit decrease	Affymetrix [319769] (imputed)	N
606	chr6_cox_hap2	2859638	2859639	rs9266634	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	FGFR3P1	rs9266634-A	NR	2E-14		0.0219479	[0.016-0.028] unit decrease	Affymetrix [321169] (imputed)	N
606	chr6_cox_hap2	2859638	2859639	rs9266634	28762467	Wadelius M	2017-08-01	Clin Pharmacol Ther	Sulfasalazine-Induced Agranulocytosis Is Associated With the Human Leukocyte Antigen Locus.	Sulfasalazine-induced agranulocytosis	36 European ancestry cases, 5,170 European ancestry untreated controls	NA	6p21.33	intergenic	rs9266634-?	NR	3E-8		5.37	[2.97-9.69]	Illumina [9380034] (imputed)	N
606	chr6_cox_hap2	2859638	2859639	rs9266634	28762467	Wadelius M	2017-08-01	Clin Pharmacol Ther	Sulfasalazine-Induced Agranulocytosis Is Associated With the Human Leukocyte Antigen Locus.	Sulfasalazine-induced agranulocytosis	36 European ancestry cases, 5,170 European ancestry untreated controls	NA	6p21.33	HLA-B	rs9266634-?	NR	3E-8		5.37	[2.97-9.69]	Illumina [9380034] (imputed)	N
606	chr6_cox_hap2	2859729	2859730	rs9266639	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DDR1	5,364 Icelandic ancestry individuals	NA	6p21.33		rs9266639-T	0.2296	1E-7		0.113803	[0.072-0.156] unit increase	Illumina [7506463] (imputed)	N
606	chr6_cox_hap2	2859864	2859865	rs2844543	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	ZDHHC20P2	rs2844543-T	NR	3E-12		0.0196225	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_cox_hap2	2859864	2859865	rs2844543	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	ZDHHC20P2	rs2844543-T	NR	4E-11		0.0185963	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_cox_hap2	2859864	2859865	rs2844543	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	ZDHHC20P2	rs2844543-T	NR	4E-11		0.0186102	[0.013-0.024] unit decrease	Affymetrix [321016] (imputed)	N
606	chr6_cox_hap2	2859864	2859865	rs2844543	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	ZDHHC20P2	rs2844543-T	NR	2E-16		0.0252366	[0.019-0.031] unit decrease	Affymetrix [323123] (imputed)	N
606	chr6_cox_hap2	2859886	2859887	rs79815527	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28+ CD45RA+ CD8dim T cell %T cell	3,440 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs79815527-A	0.12032	3E-9		0.2753	[0.18-0.37] unit increase	Illumina [18357815] (imputed)	N
606	chr6_cox_hap2	2859934	2859935	rs2844542	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	71,221 East Asian ancestry individuals	NA	6p21.33		rs2844542-G	0.354053	4E-8		0.024232	[0.016-0.033] unit increase	Illumina [13466143] (imputed)	N
606	chr6_cox_hap2	2860120	2860121	rs2244020	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	ZDHHC20P2	rs2244020-G	NR	4E-13		0.0234399	[0.017-0.03] unit decrease	Affymetrix [323123] (imputed)	N
606	chr6_cox_hap2	2860120	2860121	rs2244020	25102180	Ng MC	2014-08-07	PLoS Genet	Meta-analysis of genome-wide association studies in African Americans provides insights into the genetic architecture of type 2 diabetes.	Type 2 diabetes	8,284 African American cases, 15,543 African American controls	6,061 African American cases, 5,483 African American controls, 8,130 European ancestry cases, 38,987 European ancestry controls	6p21.33	HLA-B	rs2244020-G	0.69	7E-9		1.09	[1.06-1.13]	Affymetrix, Illumina [2579389] (imputed)	N
606	chr6_cox_hap2	2860120	2860121	rs2244020	25102180	Ng MC	2014-08-07	PLoS Genet	Meta-analysis of genome-wide association studies in African Americans provides insights into the genetic architecture of type 2 diabetes.	Type 2 diabetes	8,284 African American cases, 15,543 African American controls	6,061 African American cases, 5,483 African American controls, 8,130 European ancestry cases, 38,987 European ancestry controls	6p21.33	HLA-B	rs2244020-G	0.69	1E-6	(AA)	1.11	[1.07-1.16]	Affymetrix, Illumina [2579389] (imputed)	N
606	chr6_cox_hap2	2860467	2860468	rs4713460	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.33		rs4713460-G	0.739	7E-16				Affymetrix [10369434] (imputed)	N
606	chr6_cox_hap2	2860467	2860468	rs4713460	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	ZDHHC20P2	rs4713460-A	NR	2E-8		0.019914	[0.013-0.027] unit increase	Affymetrix [323858] (imputed)	N
606	chr6_cox_hap2	2860485	2860486	rs4713462	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	ZDHHC20P2	rs4713462-A	NR	3E-9		0.0207985	[0.014-0.028] unit decrease	Affymetrix [323123] (imputed)	N
606	chr6_cox_hap2	2860485	2860486	rs4713462	32534018	Liu X	2020-06-10	Brain Behav Immun	Genetic factors underlying the bidirectional relationship between autoimmune and mental disorders - findings from a Danish population-based study.	Autoimmune traits	1,383 Danish ancestry cases, 62,656 Danish ancestry controls	NA	6p21.33	NR	rs4713462-A	0.29	2E-13		1.37	[1.26-1.49]	NR [7721839] (imputed)	N
606	chr6_cox_hap2	2860709	2860710	rs2596570	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Tyrosine levels	114,913 European ancestry individuals	NA	6p21.33		rs2596570-T	0.834751	5E-9		0.0325088	[0.022-0.043] unit decrease	NR [11722792] (imputed)	N
606	chr6_cox_hap2	2861034	2861035	rs4143332	23603763	Liu JZ	2013-06-01	Nat Genet	Dense genotyping of immune-related disease regions identifies nine new risk loci for primary sclerosing cholangitis.	Primary sclerosing cholangitis	3,789 European ancestry cases, 25,079 European ancestry controls	NA	6p21.33	HLA-B	rs4143332-?	NR	1E-250				Illumina [140322] (imputed)	N
606	chr6_cox_hap2	2861046	2861047	rs9266677	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	ZDHHC20P2	rs9266677-A	NR	2E-8		0.0194816	[0.013-0.026] unit increase	Affymetrix [323123] (imputed)	N
606	chr6_cox_hap2	2861186	2861187	rs4143333	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	6p21.33	MICA	rs4143333-G	0.12	2E-16	(conditional on rs2284174)	1.15	[NR]	Affymetrix, Illumina [6224355] (imputed)	N
606	chr6_cox_hap2	2861186	2861187	rs4143333	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	6p21.33	HLA-C, MICA	rs4143333-G	NR	1E-9		0.186384	[0.13-0.25] unit decrease	Illumina [at least 950000] (imputed)	N
606	chr6_cox_hap2	2862495	2862496	rs9266721	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.33		rs9266721-C	0.408	8E-27				Affymetrix [10369434] (imputed)	N
606	chr6_cox_hap2	2862520	2862521	rs9295987	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CREB3L4	5,364 Icelandic ancestry individuals	NA	6p21.33		rs9295987-G	0.04402	4E-158		1.13632	[1.05-1.22] unit increase	Illumina [7506463] (imputed)	N
606	chr6_cox_hap2	2862520	2862521	rs9295987	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	FGFR3P1	rs9295987-G	0.061	3E-69	(Cyclic AMP-responsive element-binding protein 3-like protein 4, CREB3L4.11308.8.3)	0.87	[0.77-0.97] unit increase	Affymetrix [10572788] (imputed)	N
606	chr6_cox_hap2	2862979	2862980	rs2844535	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-S	rs2844535-G	NR	1E-11		0.023805	[0.017-0.031] unit decrease	Affymetrix [323858] (imputed)	N
606	chr6_cox_hap2	2862979	2862980	rs2844535	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HLA-S	rs2844535-G	NR	3E-11		0.0233241	[0.016-0.03] unit decrease	Affymetrix [127266] (imputed)	N
606	chr6_cox_hap2	2863381	2863382	rs1521	31050781	Zhao SX	2019-05-03	JAMA Netw Open	Assessment of Molecular Subtypes in Thyrotoxic Periodic Paralysis and Graves Disease Among Chinese Han Adults: A Population-Based Genome-Wide Association Study.	Thyrotoxic hypokalemic periodic paralysis and Graves disease	171 Han Chinese ancestry cases, 2,160 Han Chinese ancestry controls	362 Han Chinese ancestry cases, 1,089 Han Chinese ancestry controls	6p21.33	MICA/HLA-B	rs1521-?	0.81	4E-18		2.51	[2.02-3.13]	Illumina [2752055] (imputed)	N
606	chr6_cox_hap2	2863381	2863382	rs1521	21841780	Chu X	2011-08-14	Nat Genet	A genome-wide association study identifies two new risk loci for Graves' disease.	Graves' disease	1,468 Chinese ancestry cases, 1,490 Chinese ancestry controls	3,994 Chinese ancestry cases, 3,510 Chinese ancestry controls	6p21.33	HLA-B	rs1521-T	0.79	2E-65		1.92	[1.78-2.08]	Illumina [486049]	N
606	chr6_cox_hap2	2863731	2863732	rs17193507	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	683 Turkish ancestry cases, 1,721 Turkish ancestry controls	NA	6p21.33	HLA-B, MICA	rs17193507-?	NR	2E-18	(conditional on rs2844678, rs9262437 and rs61444472)			Illumina [4495750] (imputed)	N
606	chr6_cox_hap2	2863731	2863732	rs17193507	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	286 European ancestry cases, 2,652 European ancestry controls, 76 Han Chinese ancestry cases, 889 Han Chinese ancestry controls, 46 South Asian ancestry cases, 501 South Asian ancestry controls, 683 Turkish ancestry cases, 1,721 Turkish ancestry controls	NA	6p21.33	HLA-B, MICA	rs17193507-?	NR	7E-30	(conditional on rs2844678 and rs12524487)	3.28	NR	Illumina [up to 4495750] (imputed)	N
606	chr6_cox_hap2	2863889	2863890	rs9266745	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p21.33	HLA-B, MICA	rs9266745-G	0.17	2E-8	(Turkish)	1.87	[1.50-2.34]	Illumina [up to 547389]	N
606	chr6_cox_hap2	2864199	2864200	rs3020582	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-S	rs3020582-A	NR	3E-32		0.0377962	[0.032-0.044] unit increase	Affymetrix [323123] (imputed)	N
606	chr6_cox_hap2	2864207	2864208	rs2905715	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-S	rs2905715-C	NR	1E-12		0.0208764	[0.015-0.027] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_cox_hap2	2864207	2864208	rs2905715	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-S	rs2905715-C	NR	1E-10		0.0211485	[0.015-0.028] unit increase	Affymetrix [323858] (imputed)	N
606	chr6_cox_hap2	2864207	2864208	rs2905715	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-S	rs2905715-C	NR	1E-12		0.020881	[0.015-0.027] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_cox_hap2	2864207	2864208	rs2905715	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HLA-S	rs2905715-C	NR	3E-10		0.0206892	[0.014-0.027] unit increase	Affymetrix [127266] (imputed)	N
606	chr6_cox_hap2	2864207	2864208	rs2905715	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.33	HLA-S	rs2905715-C	NR	9E-10		0.0181976	[0.012-0.024] unit increase	Affymetrix [321114] (imputed)	N
606	chr6_cox_hap2	2864207	2864208	rs2905715	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-S	rs2905715-C	NR	3E-8		0.0177635	[0.011-0.024] unit decrease	Affymetrix [323123] (imputed)	N
606	chr6_cox_hap2	2864207	2864208	rs2905715	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HLA-S	rs2905715-C	NR	3E-13		0.0217768	[0.016-0.028] unit increase	Affymetrix [321169] (imputed)	N
606	chr6_cox_hap2	2864226	2864227	rs3020581	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-S	rs3020581-G	NR	2E-14		0.0240767	[0.018-0.03] unit decrease	Affymetrix [323858] (imputed)	N
606	chr6_cox_hap2	2864226	2864227	rs3020581	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HLA-S	rs3020581-G	NR	1E-12		0.0224897	[0.016-0.029] unit decrease	Affymetrix [127266] (imputed)	N
606	chr6_cox_hap2	2864226	2864227	rs3020581	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HLA-S	rs3020581-G	NR	6E-18		0.0248167	[0.019-0.03] unit decrease	Affymetrix [321169] (imputed)	N
606	chr6_cox_hap2	2864271	2864272	rs9266762	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-S	rs9266762-T	NR	2E-8		0.019515	[0.013-0.026] unit decrease	Affymetrix [319769] (imputed)	N
606	chr6_cox_hap2	2864271	2864272	rs9266762	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-S	rs9266762-T	NR	4E-8		0.0191651	[0.012-0.026] unit increase	Affymetrix [321016] (imputed)	N
606	chr6_cox_hap2	2864341	2864342	rs2507978	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	6p21.33	HLA-B, MICA	rs2507978-G	0.41	1E-10		1.035	[1.02-1.05]	Affymetrix, Illumina [8307659] (imputed)	N
606	chr6_cox_hap2	2864352	2864353	rs9266766	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)(bidirectional)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.33		rs9266766-G	NR	2E-9				Affymetrix [7846216] (imputed)	N
606	chr6_cox_hap2	2864717	2864718	rs2442749	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	6p21.33	HLA-S	rs2442749-C	0.292193	6E-13		0.018536638	[0.013-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
606	chr6_cox_hap2	2864737	2864738	rs6920323	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.33	NR	rs6920323-T	NR	4E-6		0.022	unit decrease	Affymetrix [at least 7091467] (imputed)	N
606	chr6_cox_hap2	2864737	2864738	rs6920323	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.33	NR	rs6920323-T	NR	2E-13		0.038	unit decrease	Affymetrix [at least 7091467] (imputed)	N
606	chr6_cox_hap2	2864737	2864738	rs6920323	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.33	NR	rs6920323-T	0.812	3E-14	(EA)	0.044	unit decrease	Affymetrix [at least 7091467] (imputed)	N
606	chr6_cox_hap2	2864737	2864738	rs6920323	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.33	NR	rs6920323-T	NR	2E-11		0.036	unit decrease	Affymetrix [at least 7091467] (imputed)	N
606	chr6_cox_hap2	2864737	2864738	rs6920323	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.33	NR	rs6920323-T	0.812	4E-12	(EA)	0.042	unit decrease	Affymetrix [at least 7091467] (imputed)	N
606	chr6_cox_hap2	2864790	2864791	rs9266772	23817569	Hinds DA	2013-06-30	Nat Genet	A genome-wide association meta-analysis of self-reported allergy identifies shared and allergy-specific susceptibility loci.	Self-reported allergy	53,862 European ancestry individuals	NA	6p21.33	MICA, HLA-C	rs9266772-C	0.1882	3E-12		0.104	[0.075-0.133] unit increase	Illumina [2400000] (imputed)	N
606	chr6_cox_hap2	2865123	2865124	rs7775759	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-S	rs7775759-A	NR	1E-11		0.0216624	[0.015-0.028] unit decrease	Affymetrix [321016] (imputed)	N
606	chr6_cox_hap2	2865308	2865309	rs7741091	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	6p21.33	RNU6-603P	rs7741091-?	NR	3E-26		0.0306	[0.026-0.036] unit increase	Affymetrix [5701386] (imputed)	N
606	chr6_cox_hap2	2865308	2865309	rs7741091	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.33	HLA-S	rs7741091-A	0.6803	3E-7		0.0391	[0.024-0.054] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
606	chr6_cox_hap2	2865308	2865309	rs7741091	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p21.33	MICA	rs7741091-A	0.6701	8E-8	(EA)	0.0202	[0.013-0.028] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
606	chr6_cox_hap2	2865308	2865309	rs7741091	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p21.33	MICA	rs7741091-A	0.6701	2E-8	(EA,men)	0.0306	[0.02-0.041] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
606	chr6_cox_hap2	2865371	2865372	rs56671953	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6p21.33	NR	rs56671953-?	NR	7E-9				Affymetrix [~ 8270000] (imputed)	N
606	chr6_cox_hap2	2865848	2865849	rs2844531	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	315,284 European ancestry male individuals	NA	6p21.33	NR	rs2844531-A	0.8585	1E-30		0.0294	[0.024-0.034] unit increase	NR [~ 27400000] (imputed)	N
606	chr6_cox_hap2	2866006	2866007	rs2596565	24532677	Bossini-Castillo L	2014-02-14	Ann Rheum Dis	A genome-wide association study of rheumatoid arthritis without antibodies against citrullinated peptides.	Rheumatoid arthritis (ACPA-negative)	1,148 European ancestry cases, 6,008 European ancestry controls	774 European ancestry cases, 1,079 European ancestry controls	6p21.33	MICA, HLA-B	rs2596565-?		9E-9		1.4	[NR]	Illumina [452367]	N
606	chr6_cox_hap2	2866316	2866317	rs2523484	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-S	rs2523484-T	NR	9E-10		0.0200027	[0.014-0.026] unit increase	Affymetrix [323858] (imputed)	N
606	chr6_cox_hap2	2866316	2866317	rs2523484	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HLA-S	rs2523484-T	NR	7E-9		0.01891	[0.013-0.025] unit increase	Affymetrix [127266] (imputed)	N
606	chr6_cox_hap2	2866316	2866317	rs2523484	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-S	rs2523484-T	NR	3E-15		0.0253333	[0.019-0.032] unit decrease	Affymetrix [323123] (imputed)	N
606	chr6_cox_hap2	2866316	2866317	rs2523484	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HLA-S	rs2523484-T	NR	3E-8		0.0164823	[0.011-0.022] unit increase	Affymetrix [321169] (imputed)	N
606	chr6_cox_hap2	2866469	2866470	rs2523483	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.33	NR	rs2523483-T	0.939	3E-11	(conditional)	4.665	[4.53-4.8]	Illumina [11270530] (imputed)	N
606	chr6_cox_hap2	2866859	2866860	rs6932730	23817571	Bonnelykke K	2013-06-30	Nat Genet	Meta-analysis of genome-wide association studies identifies ten loci influencing allergic sensitization.	Allergic sensitization	5,789 European ancestry cases, 10,056 European ancestry controls	6,114 European ancestry cases, 9,920 European ancestry controls	6p21.33	MICA, HLA-C, HLA-B, MICB	rs6932730-T	0.82	4E-8		1.14	[1.09-1.20]	Affymetrix, Illumina [~ 2500000] (imputed)	N
606	chr6_cox_hap2	2866915	2866916	rs12524487	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	286 European ancestry cases, 2,652 European ancestry controls, 76 Han Chinese ancestry cases, 889 Han Chinese ancestry controls, 46 South Asian ancestry cases, 501 South Asian ancestry controls, 683 Turkish ancestry cases, 1,721 Turkish ancestry controls	NA	6p21.33	HLA-B, MICA	rs12524487-?	NR	6E-38	(conditional on rs2844678)	3.12	NR	Illumina [up to 4495750] (imputed)	N
606	chr6_cox_hap2	2866915	2866916	rs12524487	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	229 European ancestry cases, 1,088 European ancestry controls	NA	6p21.33	HLA-B, MICA	rs12524487-?	NR	7E-20				Illumina [4388215] (imputed)	N
606	chr6_cox_hap2	2866915	2866916	rs12524487	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p21.33	HLA-B, MICA	rs12524487-T	0.07	3E-15	(EA)	3.78	[2.66-5.36]	Illumina [up to 547389]	N
606	chr6_cox_hap2	2866915	2866916	rs12524487	23830517	Saruhan-Direskeneli G	2013-07-03	Am J Hum Genet	Identification of multiple genetic susceptibility loci in Takayasu arteritis.	Takayasu arteritis	305 Turkish ancestry cases, 106 European ancestry cases, 483 Turkish ancestry controls, 553 European ancestry controls	NA		HLA-B, MICA	rs12524487-T	0.04	6E-16		3.29		Illumina [at least 124312]	N
606	chr6_cox_hap2	2867237	2867238	rs13437082	28031287	Sasayama D	2016-11-26	Hum Mol Genet	Genome-wide quantitative trait loci mapping of the human cerebrospinal fluid proteome.	Cerebrospinal fluid biomarker levels	133 Japanese ancestry individuals.	NA	6p21.33	NR	rs13437082-?	NR	1E-10	(MHC class I polypeptide-related sequence A)			Illumina [514227]	N
606	chr6_cox_hap2	2867237	2867238	rs13437082	19343178	Soranzo N	2009-04-03	PLoS Genet	Meta-analysis of genome-wide scans for human adult stature identifies novel Loci and associations with measures of skeletal frame size.	Height	12,611 European ancestry individuals	7,187 European ancestry individuals	6p21.33	HLA-B	rs13437082-?	0.13	5E-8		0.07	[0.04-0.10] s.d. decrease	Illumina [229216]	N
606	chr6_cox_hap2	2867796	2867797	rs13437088	23143594	Tsoi LC	2012-12-01	Nat Genet	Identification of 15 new psoriasis susceptibility loci highlights the role of innate immunity.	Psoriasis	10,588 European ancestry cases, 22,806 European ancestry controls	NA	6p21.33	HLA-B, HLA-C, MICA	rs13437088-T	0.25	3E-40	(conditioned on rs4406273)	1.32		Illumina [111236] (imputed)	N
606	chr6_cox_hap2	2869207	2869208	rs72657657	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG181B23.7	rs72657657-A	NR	4E-13		0.0276575	[0.02-0.035] unit decrease	Affymetrix [323123] (imputed)	N
606	chr6_cox_hap2	2870595	2870596	rs3128983	33002439	Jin G	2020-10-01	Lancet Oncol	Genetic risk, incident gastric cancer, and healthy lifestyle: a meta-analysis of genome-wide association studies and prospective cohort study.	Gastric cancer	10,254 Han Chinese ancestry cases, 10,914 Han Chinese ancestry controls	NA	6p21.33	NR	rs3128983-T	0.62	4E-6		0.9	NR	Affymetrix, Illumina [6957974] (imputed)	N
606	chr6_cox_hap2	2870947	2870948	rs189117034	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	6p21.33		rs189117034-G	0.012714	4E-6		0.14073	[0.081-0.2] unit decrease	Affymetrix [15580782] (imputed)	N
606	chr6_cox_hap2	2871622	2871623	rs9266791	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG181B23.7	rs9266791-C	NR	9E-16		0.0226999	[0.017-0.028] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_cox_hap2	2871622	2871623	rs9266791	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG181B23.7	rs9266791-C	NR	5E-10		0.0195742	[0.013-0.026] unit increase	Affymetrix [323858] (imputed)	N
606	chr6_cox_hap2	2871622	2871623	rs9266791	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG181B23.7	rs9266791-C	NR	5E-15		0.0220951	[0.017-0.028] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_cox_hap2	2871622	2871623	rs9266791	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	XXbac-BPG181B23.7	rs9266791-C	NR	7E-9		0.0181935	[0.012-0.024] unit increase	Affymetrix [127266] (imputed)	N
606	chr6_cox_hap2	2871622	2871623	rs9266791	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG181B23.7	rs9266791-C	NR	4E-9		0.0165754	[0.011-0.022] unit decrease	Affymetrix [321016] (imputed)	N
606	chr6_cox_hap2	2871622	2871623	rs9266791	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG181B23.7	rs9266791-C	NR	5E-14		0.0232092	[0.017-0.029] unit decrease	Affymetrix [323123] (imputed)	N
606	chr6_cox_hap2	2871622	2871623	rs9266791	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG181B23.7	rs9266791-C	NR	7E-15		0.0222285	[0.017-0.028] unit increase	Affymetrix [321169] (imputed)	N
606	chr6_cox_hap2	2871634	2871635	rs9348866	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG181B23.7	rs9348866-T	NR	5E-10		0.0179264	[0.012-0.024] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_cox_hap2	2871634	2871635	rs9348866	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG181B23.7	rs9348866-T	NR	3E-9		0.0188961	[0.013-0.025] unit increase	Affymetrix [323858] (imputed)	N
606	chr6_cox_hap2	2871634	2871635	rs9348866	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG181B23.7	rs9348866-T	NR	4E-9		0.0169345	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_cox_hap2	2871634	2871635	rs9348866	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	XXbac-BPG181B23.7	rs9348866-T	NR	3E-8		0.0176499	[0.011-0.024] unit increase	Affymetrix [127266] (imputed)	N
606	chr6_cox_hap2	2871634	2871635	rs9348866	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG181B23.7	rs9348866-T	NR	8E-11		0.0186692	[0.013-0.024] unit decrease	Affymetrix [321016] (imputed)	N
606	chr6_cox_hap2	2871634	2871635	rs9348866	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG181B23.7	rs9348866-T	NR	3E-16		0.0256147	[0.019-0.032] unit decrease	Affymetrix [323123] (imputed)	N
606	chr6_cox_hap2	2871634	2871635	rs9348866	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG181B23.7	rs9348866-T	NR	4E-9		0.0170756	[0.011-0.023] unit increase	Affymetrix [321169] (imputed)	N
606	chr6_cox_hap2	2871840	2871845	rs71699779	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	6p21.33	XXbac-BPG181B23.7	rs71699779-C	0.069883	9E-37		0.057562444	[0.049-0.066] unit increase	Affymetrix [93095623] (imputed)	N
606	chr6_cox_hap2	2872777	2872778	rs2596517	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG181B23.7	rs2596517-G	NR	7E-14		0.0296528	[0.022-0.037] unit increase	Affymetrix [323123] (imputed)	N
606	chr6_cox_hap2	2872937	2872938	rs7751505	23449627	Cousminer DL	2013-02-27	Hum Mol Genet	Genome-wide association and longitudinal analyses reveal genetic loci linking pubertal height growth, pubertal timing and childhood adiposity.	Pubertal anthropometrics	up to 5,043 European ancestry males, up to 5,756 European ancestry females	NA	6p21.33	MICA, VARS2	rs7751505-C	0.28	4E-6	(Pubertal growth)	0.07	[0.041-0.099] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
606	chr6_cox_hap2	2873284	2873285	rs116562707	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Naive CD8+ T cell %T cell	3,427 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs116562707-G	0.0186	3E-9		0.3952	[0.27-0.53] unit increase	Illumina [18349913] (imputed)	N
606	chr6_cox_hap2	2873284	2873285	rs116562707	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28+ CD45RA+ CD8+ T cell %T cell	3,440 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs116562707-G	0.01868	4E-9		0.4024	[0.27-0.54] unit increase	Illumina [18357815] (imputed)	N
606	chr6_cox_hap2	2873326	2873327	rs28359827	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.33	NR	rs28359827-A	0.077	2E-71	(conditional)	2.916	[2.8-3.03]	Illumina [11270530] (imputed)	N
606	chr6_cox_hap2	2874671	2874672	rs35026345	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	CAG-81 sp000435795 abundance in stool	5,959 Finnish ancestry individuals	NA	6p21.33		rs35026345-T	0.318743	2E-8		0.100796	[0.065-0.136] unit decrease	Illumina [7980478] (imputed)	N
606	chr6_cox_hap2	2874949	2874950	rs28366119	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Keratinocyte cancer (MTAG)	at least 18,538 European ancestry cases, at least 340,302 European ancestry controls	NA	6p21.33	ERG	rs28366119-T	0.939044	4E-11		1.14	[1.10-1.19]	Affymetrix [7600000] (imputed)	N
606	chr6_cox_hap2	2874994	2874995	rs16899524	23417110	Tin A	2013-02-16	Hum Genet	Genome-wide association study identified the human leukocyte antigen region as a novel locus for plasma beta-2 microglobulin.	Beta-2 microglubulin plasma levels	6,728 European ancestry individuals		6p21.33	HLA-B	rs16899524-C	0.93	1E-8		0.04	[0.026-0.054] unit increase	Affymetrix [2500000] (imputed)	N
606	chr6_cox_hap2	2875566	2875567	rs183809241	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pneumonia	16,887 European ancestry cases, 463,412 European ancestry controls, 7,423 East Asian ancestry cases, 171,303 East Asian ancestry controls	NA	6p21.33		rs183809241-C	NR	9E-16		0.7693	[0.58-0.96] unit increase	Affymetrix, Illumina [25843326] (imputed)	N
606	chr6_cox_hap2	2875625	2875626	rs142973694	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	IgA levels	16,883 Icelandic ancestry individuals	2,151 Swedish ancestry individuals	6p21.33	MICA	rs142973694-A	0.0655	7E-10		0.13	NR SD units increase	Illumina [21568490] (imputed)	N
606	chr6_cox_hap2	2875710	2875711	rs2523466	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.33		rs2523466-G	0.77	8E-68				Affymetrix [10369434] (imputed)	N
606	chr6_cox_hap2	2876731	2876732	rs11757660	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG181B23.7	rs11757660-C	NR	9E-13		0.0223072	[0.016-0.028] unit decrease	Affymetrix [321016] (imputed)	N
606	chr6_cox_hap2	2876772	2876773	rs28366133	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG181B23.7	rs28366133-T	NR	2E-10		0.0184393	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_cox_hap2	2876772	2876773	rs28366133	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG181B23.7	rs28366133-T	NR	7E-10		0.0199985	[0.014-0.026] unit increase	Affymetrix [323858] (imputed)	N
606	chr6_cox_hap2	2876772	2876773	rs28366133	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG181B23.7	rs28366133-T	NR	2E-9		0.0176126	[0.012-0.023] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_cox_hap2	2876772	2876773	rs28366133	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	XXbac-BPG181B23.7	rs28366133-T	NR	6E-9		0.0188541	[0.012-0.025] unit increase	Affymetrix [127266] (imputed)	N
606	chr6_cox_hap2	2876772	2876773	rs28366133	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG181B23.7	rs28366133-T	NR	6E-18		0.0274101	[0.021-0.034] unit decrease	Affymetrix [323123] (imputed)	N
606	chr6_cox_hap2	2876772	2876773	rs28366133	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG181B23.7	rs28366133-T	NR	5E-10		0.0183385	[0.013-0.024] unit increase	Affymetrix [321169] (imputed)	N
606	chr6_cox_hap2	2876772	2876773	rs28366133	28468790	Agopian AJ	2017-06-01	Circ Cardiovasc Genet	Genome-Wide Association Studies and Meta-Analyses for Congenital Heart Defects.	Conotruncal heart defects (maternal effects)	up to 838 European ancestry trios	NA	6p21.33	intergenic	rs28366133-?	NR	4E-6		1.226459	[1.124163-1.338064]	Illumina [at least 4756722] (imputed)	N
606	chr6_cox_hap2	2877544	2877545	rs72502580	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG181B23.7	rs72502580-T	NR	9E-9		0.036638	[0.024-0.049] unit increase	Affymetrix [323858] (imputed)	N
606	chr6_cox_hap2	2877544	2877545	rs72502580	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	XXbac-BPG181B23.7	rs72502580-T	NR	8E-9		0.0367455	[0.024-0.049] unit increase	Affymetrix [127266] (imputed)	N
606	chr6_cox_hap2	2878483	2878484	rs4349859	21743469	Evans DM	2011-07-10	Nat Genet	Interaction between ERAP1 and HLA-B27 in ankylosing spondylitis implicates peptide handling in the mechanism for HLA-B27 in disease susceptibility.	Ankylosing spondylitis	3,023 European ancestry cases, 8,779 European ancestry controls	2,111 European ancestry cases, 4,483 European ancestry controls	6p21.33	HLA-B	rs4349859-A	0.04	1E-200	(less than)			Illumina [2223620] (imputed)	N
606	chr6_cox_hap2	2879291	2879292	rs2596542	21499248	Kumar V	2011-04-17	Nat Genet	Genome-wide association study identifies a susceptibility locus for HCV-induced hepatocellular carcinoma.	Hepatocellular carcinoma	721 Japanese ancestry cases, 2,890 Japanese ancestry controls	673 Japanese ancestry cases, 2,596 Japanese ancestry controls	6p21.33	MICA	rs2596542-A	0.33	4E-13		1.39	[1.27-1.52]	Illumina [432703]	N
606	chr6_cox_hap2	2879748	2879749	rs146482045	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.33		rs146482045-T	0.934	1E-13				Affymetrix [10369434] (imputed)	N
606	chr6_cox_hap2	2881203	2881204	rs112142209	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DNAJB11	5,359 Icelandic ancestry individuals	NA	6p21.33		rs112142209-G	0.01759	6E-13		0.501147	[0.36-0.64] unit increase	Illumina [7506463] (imputed)	N
606	chr6_cox_hap2	2882360	2882361	rs13220896	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	6p21.33	MICA	rs13220896-G	0.95996	2E-12		0.0328311	[0.024-0.042] unit increase	NR [13737936] (imputed)	N
606	chr6_cox_hap2	2882360	2882361	rs13220896	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p21.33		rs13220896-?	NR	4E-15		0.0407174	[0.03-0.051] unit increase	Affymetrix [20259828] (imputed)	N
606	chr6_cox_hap2	2883420	2883421	rs17200067	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MICA	5,360 Icelandic ancestry individuals	NA	6p21.33		rs17200067-T	0.03112	2E-87		1.02615	[0.92-1.13] unit increase	Illumina [7506463] (imputed)	N
606	chr6_cox_hap2	2883420	2883421	rs17200067	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	MICA, HCP5, Y_RNA	rs17200067-T	0.0311245	6E-15	(EA, MHC class I polypeptide-related sequence A)	0.9664	[0.73-1.21] unit increase	Affymetrix [509946]	N
607	chr6_cox_hap2	2883682	2883683	rs116135464	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Uveitis	2,616 European ancestry cases, 478,126 European ancestry controls, 125 East Asian ancestry cases, 174,600 East Asian ancestry controls	NA	6p21.33		rs116135464-T	NR	8E-191		1.8397	[1.72-1.96] unit increase	Affymetrix, Illumina [25844095] (imputed)	N
607	chr6_cox_hap2	2883769	2883770	rs59440261	26553974	McLaren PJ	2015-11-09	Proc Natl Acad Sci U S A	Polymorphisms of large effect explain the majority of the host genetic contribution to variation of HIV-1 virus load.	Setpoint viral load in HIV-1 infection	6,315 European ancestry cases	NA	6p21.33	HLA-B	rs59440261-?	NR	2E-83				Affymetrix, Illumina [~ 8000000] (imputed)	N
607	chr6_cox_hap2	2884128	2884129	rs2844519	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	6p21.33	MICA	rs2844519-C	0.792829	7E-10		0.017882064	[0.012-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
607	chr6_cox_hap2	2884285	2884286	rs2301747	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCP5, MICA	rs2301747-G	NR	2E-12		0.0308634	[0.022-0.039] unit decrease	Affymetrix [321016] (imputed)	N
607	chr6_cox_hap2	2885267	2885268	rs2844518	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MICA	5,360 Icelandic ancestry individuals	NA	6p21.33		rs2844518-T	0.3275	2E-28		0.215281	[0.18-0.25] unit increase	Illumina [7506463] (imputed)	N
607	chr6_cox_hap2	2885416	2885417	rs2507968	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Gynecologic disease (multivariate analysis)	up to 7,975 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs2507968-?		3E-9	(uterine fibroid, uterine cervical cancer)			Illumina [7645193] (imputed)	N
607	chr6_cox_hap2	2886683	2886684	rs116795853	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	MICA	rs116795853-A	0.026	1E-18	(DnaJ homolog subfamily B member 11, DNAJB11.7110.2.3)	0.66	[0.5-0.82] unit increase	Affymetrix [10572788] (imputed)	N
607	chr6_cox_hap2	2886960	2886961	rs2857281	26190474	Dai Y	2015-07-20	Sci Rep	Performance of genetic risk factors in prediction of trichloroethylene induced hypersensitivity syndrome.	Trichloroethylene-induced hypersensitivity syndrome	98 Han Chinese ancestry cases, 98 Han Chinese ancestry trichloroethylene-tolerant controls	Up to 74 Han Chinese ancestry cases, up to 1,661 Han Chinese ancestry trichloroethylene-tolerant controls	6p21.33	MICA	rs2857281-C	0.081	1E-37		11.92	[8.16-17.42]	Illumina [1392644]	N
607	chr6_cox_hap2	2887277	2887278	rs12174396	32771030	Tangtanatakul P	2020-08-08	Arthritis Res Ther	Meta-analysis of genome-wide association study identifies FBN2 as a novel locus associated with systemic lupus erythematosus in Thai population.	Systemic lupus erythematosus	487 Thai cases, 1,606 Thai controls	405 Thai cases, 1,590 Thai controls	6p21.33	HCP5	rs12174396-G	0.18	2E-7		0.6904	[NR]	Illumina [421909] (imputed)	N
607	chr6_cox_hap2	2889243	2889244	rs2263314	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCP5, MICA	rs2263314-T	NR	9E-9		0.0249923	[0.016-0.034] unit increase	Affymetrix [323858] (imputed)	N
607	chr6_cox_hap2	2889243	2889244	rs2263314	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HCP5, MICA	rs2263314-T	NR	6E-9		0.0252674	[0.017-0.034] unit increase	Affymetrix [127266] (imputed)	N
607	chr6_cox_hap2	2890286	2890287	rs12175489	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue adjusted for BMI	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	6p21.33	HCP5, HLA-B	rs12175489-A	0.15	2E-6	(men)			Affymetrix, Illumina [2500000] (imputed)	N
607	chr6_cox_hap2	2890339	2890340	rs114291795	27157822	Hallberg P	2016-05-03	Lancet Diabetes Endocrinol	Genetic variants associated with antithyroid drug-induced agranulocytosis: a genome-wide association study in a European population.	Non-chemotherapy drug induced agranulocytosis	222 European ancestry cases, 12 cases, 5,170 European ancestry controls	NA	6p21.33	MICA, HCP5	rs114291795-?	NR	2E-15		3.57	[2?61-4?90]	Illumina [9380034] (imputed)	N
607	chr6_cox_hap2	2890418	2890419	rs2523496	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cervical cancer	909 European ancestry cases, 238,249 European ancestry controls, 967 East Asian ancestry cases, 60,614 East Asian ancestry controls	NA	6p21.33		rs2523496-C	NR	2E-13		0.2559	[0.19-0.32] unit decrease	Affymetrix, Illumina [25777760] (imputed)	N
607	chr6_cox_hap2	2890418	2890419	rs2523496	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cervical cancer	6,563 European ancestry cases, 410,350 European ancestry controls	NA	6p21.33		rs2523496-T	NR	4E-25		1.2076	NR	Affymetrix [7846216] (imputed)	N
607	chr6_cox_hap2	2890448	2890452	rs66509943	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	6p21.33	MICA	rs66509943-?	NR	2E-17		0.0473851	[0.036-0.058] unit decrease	Illumina [13520550] (imputed)	N
607	chr6_cox_hap2	2890452	2890456	rs201838897	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (salicylic acid and derivatives)	61,583 European ancestry cases, 50,427 European ancestry controls, 41,461 East Asian ancestry cases, 137,265 East Asian ancestry controls	NA	6p21.33		rs201838897-C	NR	9E-17		0.0893	[0.068-0.11] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
607	chr6_cox_hap2	2890452	2890456	rs201838897	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls, 49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	6p21.33		rs201838897-C	NR	4E-14		0.0785	[0.058-0.099] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
607	chr6_cox_hap2	2890492	2890493	rs6938453	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCP5, MICA	rs6938453-A	NR	2E-14		0.0262104	[0.019-0.033] unit decrease	Affymetrix [321016] (imputed)	N
607	chr6_cox_hap2	2890492	2890493	rs6938453	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCP5, MICA	rs6938453-A	NR	3E-14		0.028343	[0.021-0.036] unit decrease	Affymetrix [323123] (imputed)	N
607	chr6_cox_hap2	2890492	2890493	rs6938453	33794208	Bowden SJ	2021-04-01	Lancet Oncol	Genetic variation in cervical preinvasive and invasive disease: a genome-wide association study.	Cervical intraepithelial neoplasia grade 3 and invasive cervical cancer	764 European ancestry invasive cervical cancer cases, 4,005 European ancestry cervical intraepithelial neoplasia grade 3 cases, 145,545 European ancestry controls	NA	6p21.33	MICA	rs6938453-?	NR	2E-17		0.79	[0.75-0.83]	Affymetrix [9600464] (imputed)	N
607	chr6_cox_hap2	2890492	2890493	rs6938453	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	6p21.33	NR	rs6938453-?	NR	6E-29	(MIC-A)	0.979642	[0.81-1.15] unit decrease	Illumina [11901634] (imputed)	N
607	chr6_cox_hap2	2890608	2890609	rs748543364	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-3 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	6p21.33		rs748543364-AG	0.654332	5E-8		0.0236619	[0.015-0.032] unit decrease	NR [11722792] (imputed)	N
607	chr6_cox_hap2	2890608	2890609	rs748543364	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Docosahexaenoic acid levels	115,006 European ancestry individuals	NA	6p21.33		rs748543364-AG	0.654332	7E-10		0.0264866	[0.018-0.035] unit decrease	NR [11722792] (imputed)	N
607	chr6_cox_hap2	2890673	2890674	rs28559870	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.33		rs28559870-C	0.824	3E-54				Affymetrix [10369434] (imputed)	N
607	chr6_cox_hap2	2890673	2890674	rs28559870	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.33	NR	rs28559870-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
607	chr6_cox_hap2	2890674	2890675	rs28436034	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCP5, MICA	rs28436034-G	NR	8E-9		0.022753	[0.015-0.03] unit increase	Affymetrix [323858] (imputed)	N
607	chr6_cox_hap2	2890674	2890675	rs28436034	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HCP5, MICA	rs28436034-G	NR	4E-8		0.0216205	[0.014-0.029] unit increase	Affymetrix [127266] (imputed)	N
607	chr6_cox_hap2	2890674	2890675	rs28436034	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCP5, MICA	rs28436034-G	NR	4E-11		0.02346	[0.016-0.03] unit decrease	Affymetrix [321016] (imputed)	N
607	chr6_cox_hap2	2890674	2890675	rs28436034	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCP5, MICA	rs28436034-G	NR	2E-13		0.0283594	[0.021-0.036] unit decrease	Affymetrix [323123] (imputed)	N
607	chr6_cox_hap2	2891034	2891035	rs9380254	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	6p21.33	MICA	rs9380254-C	0.061689	4E-16		0.03985305	[0.03-0.049] unit decrease	Affymetrix [93095623] (imputed)	N
607	chr6_cox_hap2	2891467	2891468	rs2853981	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.33	MICA	rs2853981-G	NR	5E-8	(women)	0.0250092	[0.016-0.034] unit decrease	Illumina [13520550] (imputed)	N
607	chr6_cox_hap2	2891742	2891743	rs41560824	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LRPAP1	5,361 Icelandic ancestry individuals	NA	6p21.33		rs41560824-G	0.0175	3E-261		2.24371	[2.12-2.37] unit increase	Illumina [7506463] (imputed)	N
607	chr6_cox_hap2	2891814	2891815	rs1131896	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	6p21.33	MICA	rs1131896-A	0.231391	1E-19		0.028329957	[0.022-0.034] unit increase	Affymetrix [93095623] (imputed)	N
607	chr6_cox_hap2	2891814	2891815	rs1131896	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	6p21.33	MICA	rs1131896-A	0.2312	1E-29		0.04771386	[0.039-0.056] unit decrease	Affymetrix [~ 2500000] (imputed)	N
607	chr6_cox_hap2	2891814	2891815	rs1131896	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	6p21.33	MICA	rs1131896-A	0.2312	2E-28		0.04672725	[0.038-0.055] unit increase	Affymetrix [~ 2500000] (imputed)	N
607	chr6_cox_hap2	2892003	2892004	rs2853977	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.33	MICA	rs2853977-T	NR	1E-10		0.0208107	[0.015-0.027] unit decrease	Illumina [13520550] (imputed)	N
607	chr6_cox_hap2	2892090	2892091	rs3828879	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCP5, MICA	rs3828879-T	NR	3E-10		0.0269729	[0.019-0.035] unit decrease	Affymetrix [321016] (imputed)	N
607	chr6_cox_hap2	2892733	2892734	rs112243036	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCP5, MICA	rs112243036-A	NR	1E-9		0.0293452	[0.02-0.039] unit decrease	Affymetrix [323123] (imputed)	N
607	chr6_cox_hap2	2893121	2893122	rs2256174	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	6p21.33	MICA, HCP5	rs2256174-A	0.4616	2E-7		0.0375	[0.023-0.052] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
607	chr6_cox_hap2	2893148	2893149	rs2256175	28041642	Carmona FD	2016-12-29	Am J Hum Genet	A Genome-wide Association Study Identifies Risk Alleles in Plasminogen and P4HA2 Associated with Giant Cell Arteritis.	Giant cell arteritis	2,134 European ancestry cases, 9,125 European ancestry controls	NA	6p21.33	HLA-B	rs2256175-?	NR	8E-6		1.18		Illumina [1844133] (imputed)	N
607	chr6_cox_hap2	2893148	2893149	rs2256175	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	6p21.33	NR	rs2256175-?		8E-35	(MICA)			Illumina [NR]	N
607	chr6_cox_hap2	2893228	2893229	rs2256183	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCP5, MICA	rs2256183-G	NR	1E-10		0.018139	[0.013-0.024] unit decrease	Affymetrix [321016] (imputed)	N
607	chr6_cox_hap2	2893228	2893229	rs2256183	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of white cells	171,996 European ancestry individuals	NA	6p21.33	HCP5, MICA	rs2256183-G	0.4973	1E-9		0.0210357	[0.014-0.028] unit increase	Affymetrix [~ 2500000] (imputed)	N
607	chr6_cox_hap2	2893228	2893229	rs2256183	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	6p21.33	MICA	rs2256183-A	0.45	8E-29		0.04	[NR] unit increase	Affymetrix, Illumina [2834208] (imputed)	N
607	chr6_cox_hap2	2894050	2894051	rs2853968	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic hepatitis C infection	273 European ancestry cases, 351,740 European ancestry controls, 7,110 East Asian ancestry cases, 169,588 East Asian ancestry controls	NA	6p21.33		rs2853968-G	NR	2E-10		0.1124	[0.078-0.147] unit increase	Affymetrix, Illumina [20457788] (imputed)	N
607	chr6_cox_hap2	2895416	2895417	rs2853975	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein B2M	5,353 Icelandic ancestry individuals	NA	6p21.33		rs2853975-T	0.2249	9E-19		0.18093	[0.14-0.22] unit increase	Illumina [7506463] (imputed)	N
607	chr6_cox_hap2	2895416	2895417	rs2853975	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCP5, MICA	rs2853975-T	NR	3E-9		0.0197511	[0.013-0.026] unit increase	Affymetrix [323123] (imputed)	N
607	chr6_cox_hap2	2895581	2895582	rs9266825	35215271	Almandil NB	2022-01-27	Pharmaceuticals (Basel)	Integration of Transcriptome and Exome Genotyping Identifies Significant Variants with Autism Spectrum Disorder.	Autism spectrum disorder	70 Arab ancestry cases, 132 Arab ancestry controls	NA	6p21.33	NA	rs9266825-A	0.4659	6E-6		0.3147	[0.1885-0.5253]	Illumina [243345]	N
607	chr6_cox_hap2	2895610	2895611	rs1882	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	6p21.33	MICA	rs1882-G	0.4676	1E-19		0.03244427	[0.025-0.039] unit decrease	Affymetrix [~ 2500000] (imputed)	N
607	chr6_cox_hap2	2895610	2895611	rs1882	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	6p21.33	MICA	rs1882-G	0.4671	5E-19		0.0315247	[0.025-0.038] unit increase	Affymetrix [~ 2500000] (imputed)	N
607	chr6_cox_hap2	2895829	2895830	rs9266834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	6p21.33		rs9266834-T	0.889775	2E-11		0.0441975	[0.031-0.057] unit decrease	NR [11722792] (imputed)	N
607	chr6_cox_hap2	2895829	2895830	rs9266834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	6p21.33		rs9266834-T	0.889775	5E-14		0.0490222	[0.036-0.062] unit decrease	NR [11722792] (imputed)	N
607	chr6_cox_hap2	2895829	2895830	rs9266834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6p21.33		rs9266834-T	0.889775	2E-11		0.0437642	[0.031-0.057] unit decrease	NR [11722792] (imputed)	N
607	chr6_cox_hap2	2895829	2895830	rs9266834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	6p21.33		rs9266834-T	0.889775	2E-11		0.0427432	[0.03-0.055] unit decrease	NR [11722792] (imputed)	N
607	chr6_cox_hap2	2895829	2895830	rs9266834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in IDL	115,082 European ancestry individuals	NA	6p21.33		rs9266834-T	0.889775	9E-15		0.0506081	[0.038-0.063] unit increase	NR [11722792] (imputed)	N
607	chr6_cox_hap2	2895829	2895830	rs9266834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	6p21.33		rs9266834-T	0.889775	3E-9		0.0392601	[0.026-0.052] unit increase	NR [11722792] (imputed)	N
607	chr6_cox_hap2	2895829	2895830	rs9266834	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCP5	rs9266834-A	NR	8E-9		0.0263611	[0.017-0.035] unit decrease	Affymetrix [321016] (imputed)	N
607	chr6_cox_hap2	2895829	2895830	rs9266834	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCP5	rs9266834-A	NR	1E-9		0.0303575	[0.021-0.04] unit decrease	Affymetrix [323123] (imputed)	N
607	chr6_cox_hap2	2898184	2898185	rs2596528	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCP5	rs2596528-C	NR	1E-19		0.0277879	[0.022-0.034] unit decrease	Affymetrix [323123] (imputed)	N
607	chr6_cox_hap2	2900574	2900575	rs113203074	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.33		rs113203074-C	0.959	8E-27				Affymetrix [10369434] (imputed)	N
607	chr6_cox_hap2	2900574	2900575	rs113203074	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCP5	rs113203074-A	NR	2E-9		0.0426261	[0.029-0.057] unit decrease	Affymetrix [321016] (imputed)	N
607	chr6_cox_hap2	2901148	2901149	rs73402222	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8+ and CD8dim T cell %leukocyte	3,668 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs73402222-C	0.34582	5E-9		0.1904	[0.13-0.25] unit decrease	Illumina [18430788] (imputed)	N
607	chr6_cox_hap2	2901148	2901149	rs73402222	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8+ T cell %T cell	3,668 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs73402222-C	0.34582	3E-9		0.1934	[0.13-0.26] unit decrease	Illumina [18430788] (imputed)	N
607	chr6_cox_hap2	2901148	2901149	rs73402222	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4+/CD8+ T cell	3,652 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs73402222-C	0.34555	2E-8		0.1905	[0.12-0.26] unit increase	Illumina [18427348] (imputed)	N
607	chr6_cox_hap2	2902467	2902468	rs17206736	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	MICA, HCP5	rs17206736-G	0.07673019	1E-26	(EA, MHC class I polypeptide-related sequence A)	0.8764	[0.72-1.03] unit decrease	Affymetrix [509946]	N
607	chr6_cox_hap2	2902483	2902484	rs2844511	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	MICA, HCP5	rs2844511-A	0.3969849	4E-119	(MHC class I polypeptide-related sequence A)	0.9218	[0.85-0.99] unit increase	Affymetrix [509946]	N
607	chr6_cox_hap2	2903061	2903061	rs113265260	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs113265260-TAC	0.035	1E-51	(MHC class I polypeptide-related sequence B, MICB.5102.55.3)	1.07	[0.93-1.21] unit increase	Affymetrix [10572788] (imputed)	N
607	chr6_cox_hap2	2903109	2903110	rs2516448	23482656	Chen D	2013-03-12	J Natl Cancer Inst	Genome-wide association study of susceptibility loci for cervical cancer.	Cervical cancer	1,034 European ancestry cases, 3,948 European ancestry controls	1,140 European ancestry cases, 1,058 European ancestry controls	6p21.33	MICA	rs2516448-?	NR	4E-18		1.42	[1.31-1.54]	Illumina [632668]	N
607	chr6_cox_hap2	2904100	2904101	rs4418214	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	6p21.33	HCP5	rs4418214-C	0.084923	7E-17		0.03656655	[0.028-0.045] unit decrease	Affymetrix [93095623] (imputed)	N
607	chr6_cox_hap2	2904100	2904101	rs4418214	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Number of common colds	43,826 European ancestry cases, 15,720 European ancestry controls	NA	6p21.33	NR	rs4418214-?	NR	1E-6		0.0345	[0.021-0.048] unit decrease	Illumina [at least 560000] (imputed)	N
607	chr6_cox_hap2	2904100	2904101	rs4418214	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	MICA, HCP5	rs4418214-C	0.06230848	2E-15	(EA, MHC class I polypeptide-related sequence A)	0.7104	[0.54-0.88] unit decrease	Affymetrix [509946]	N
607	chr6_cox_hap2	2904100	2904101	rs4418214	23935489	McLaren PJ	2013-07-25	PLoS Pathog	Association study of common genetic variants and HIV-1 acquisition in 6,300 infected cases and 7,200 controls.	HIV-1 susceptibility	6,334 European ancestry cases, 7,247 European ancestry controls	NA	6p21.33	HLA-C, HLA-B	rs4418214-C	NR	4E-11		1.52		Affymetrix, Illumina [~ 8000000] (imputed)	N
607	chr6_cox_hap2	2904100	2904101	rs4418214	21051598	Pereyra F	2010-11-04	Science	The major genetic determinants of HIV-1 control affect HLA class I peptide presentation.	HIV-1 control	516 European cases, 1,196 European controls, 341 African American cases, 892 African American controls, 117 Hispanic cases, 560 Hispanic controls	NA	6p21.33	MICA	rs4418214-C	0.075	1E-34	(EA)	4.4	[NR]	Illumina [1384048] (imputed)	N
607	chr6_cox_hap2	2906091	2906092	rs73402240	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.33		rs73402240-C	0.962	4E-8				Affymetrix [10369434] (imputed)	N
607	chr6_cox_hap2	2906091	2906092	rs73402240	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs73402240-C	0.962	2E-11				Affymetrix [10369434] (imputed)	N
607	chr6_cox_hap2	2906091	2906092	rs73402240	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCP5	rs73402240-T	NR	3E-13		0.0548397	[0.04-0.07] unit decrease	Affymetrix [321016] (imputed)	N
607	chr6_cox_hap2	2907712	2907713	rs116534628	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.33		rs116534628-C	0.916	1E-14				Affymetrix [10369434] (imputed)	N
607	chr6_cox_hap2	2907912	2907913	rs181785842	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCP5	rs181785842-C	NR	2E-9		0.0590849	[0.04-0.078] unit decrease	Affymetrix [321016] (imputed)	N
607	chr6_cox_hap2	2910021	2910022	rs9267057	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.33	intergenic	rs9267057-?		5E-9		1.1627907	[1.1-1.22]	Affymetrix, Illumina [NR]	N
607	chr6_cox_hap2	2912927	2912928	rs2516471	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	6p21.33	HCP5	rs2516471-A	0.062429	8E-72		0.09513792	[0.085-0.106] unit decrease	Affymetrix [93095623] (imputed)	N
607	chr6_cox_hap2	2914101	2914102	rs2263323	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MICA	5,360 Icelandic ancestry individuals	NA	6p21.33		rs2263323-T	0.1049	7E-192		0.829215	[0.77-0.88] unit decrease	Illumina [7506463] (imputed)	N
607	chr6_cox_hap2	2915018	2915020	rs199530775	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs199530775-C	0.038	2E-14	(MHC class I polypeptide-related sequence B, MICB.5102.55.3)	0.49	[0.37-0.61] unit increase	Affymetrix [10572788] (imputed)	N
607	chr6_cox_hap2	2915018	2915019	rs55957433	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCP5	rs55957433-G	NR	3E-8		0.0196371	[0.013-0.027] unit decrease	Affymetrix [321016] (imputed)	N
607	chr6_cox_hap2	2916258	2916259	rs7759215	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.33	NR	rs7759215-G	0.013	9E-13		0.564225	[0.41-0.72] unit increase	Affymetrix [up to 8900000] (imputed)	N
607	chr6_cox_hap2	2916258	2916259	rs7759215	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.33	NR	rs7759215-G	0.013	5E-6	(women)	0.575344	[0.33-0.82] unit increase	Affymetrix [up to 8900000] (imputed)	N
607	chr6_cox_hap2	2918250	2918251	rs2596466	23417110	Tin A	2013-02-16	Hum Genet	Genome-wide association study identified the human leukocyte antigen region as a novel locus for plasma beta-2 microglobulin.	Beta-2 microglubulin plasma levels	6,728 European ancestry individuals		6p21.33	MICA	rs2596466-C	0.07	2E-12		0.05	[0.034-0.066] unit decrease	Affymetrix [2500000] (imputed)	N
607	chr6_cox_hap2	2918253	2918254	rs3128981	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCP5	rs3128981-G	NR	3E-8		0.0188491	[0.012-0.026] unit decrease	Affymetrix [323858] (imputed)	N
607	chr6_cox_hap2	2918253	2918254	rs3128981	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	6p21.33	HCP5	rs3128981-G	0.294246	9E-26		0.025565179	[0.021-0.03] unit increase	Affymetrix [93095623] (imputed)	N
607	chr6_cox_hap2	2918940	2918941	rs190497944	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Iritis	110 East Asian ancestry cases, 175,543 East Asian ancestry controls	NA	6p21.33		rs190497944-C	0.001120244	5E-9		27.140694	[18.06-36.22] unit increase	Illumina [13429677] (imputed)	N
607	chr6_cox_hap2	2919964	2919965	rs2516470	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	6p21.33	HCP5	rs2516470-C	0.663227	4E-13		0.017850922	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
607	chr6_cox_hap2	2919964	2919965	rs2516470	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	6p21.33	NR	rs2516470-?	NR	9E-10	(MIC-A)	0.992294	[0.67-1.31] unit decrease	Illumina [11901634] (imputed)	N
607	chr6_cox_hap2	2919964	2919965	rs2516470	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	HCP5, LINC01149	rs2516470-G	0.3482412	5E-23	(EA, MHC class I polypeptide-related sequence A)	0.4412	[0.36-0.53] unit increase	Affymetrix [509946]	N
607	chr6_cox_hap2	2920212	2920213	rs2524277	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TFF3	5,365 Icelandic ancestry individuals	NA	6p21.33		rs2524277-A	0.0351	2E-13		0.363897	[0.27-0.46] unit increase	Illumina [7506463] (imputed)	N
607	chr6_cox_hap2	2920212	2920213	rs2524277	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TFF3	5,364 Icelandic ancestry individuals	NA	6p21.33		rs2524277-A	0.0351	2E-15		0.383348	[0.29-0.48] unit increase	Illumina [7506463] (imputed)	N
607	chr6_cox_hap2	2920212	2920213	rs2524277	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	HCP5	rs2524277-A	0.062	2E-19	(Trefoil factor 3, TFF3.4721.54.2)	0.46	[0.36-0.56] unit increase	Affymetrix [10572788] (imputed)	N
607	chr6_cox_hap2	2920212	2920213	rs2524277	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	NFKBIL1	rs2524277-A	0.03869347	1E-12	(EA, Trefoil factor 3)	0.7819	[0.57-0.99] unit increase	Affymetrix [509946]	N
607	chr6_cox_hap2	2920391	2920392	rs2844520	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6p21.33		rs2844520-?	NR	1E-10		0.870197	[0.83-0.91]	NR [685523]	N
607	chr6_cox_hap2	2920461	2920462	rs9469003	21801394	Genin E	2011-07-29	Orphanet J Rare Dis	Genome-wide association study of Stevens-Johnson Syndrome and Toxic Epidermal Necrolysis in Europe.	Drug-induced Stevens-Johnson syndrome or toxic epidermal necrolysis (SJS/TEN)	424 European ancestry cases, 1,881 European ancestry controls	NA	6p21.33	HCP5	rs9469003-C	0.15	2E-9		1.73	[1.44-2.08]	Illumina [268914]	N
607	chr6_cox_hap2	2920898	2920899	rs2524276	22864933	O'Donnell PH	2012-01-03	Cancer	Identification of novel germline polymorphisms governing capecitabine sensitivity.	Capecitabine sensitivity	Up to 84 East Asian ancestry lymphoblastoid cell lines, up to 164 European ancestry lymphoblastoid cell lines, up to 173 African ancestry lymphoblastoid cell lines, up to 82 African American lymphoblastoid cell lines	NA	6p21.33	intergenic	rs2524276-?	NR	6E-6				NR [~ 2000000]	N
607	chr6_cox_hap2	2921916	2921917	rs61447909	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Squamous cell carcinoma	9,674 European ancestry cases, 625,657 European ancestry controls	NA	6p21.33	LINC01149	rs61447909-A	NR	2E-6		1.1111112	[1.06-1.16]	Affymetrix, Illumina [up to 9061544] (imputed)	N
607	chr6_cox_hap2	2921916	2921917	rs61447909	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Keratinocyte cancer (MTAG)	at least 18,538 European ancestry cases, at least 340,302 European ancestry controls	NA	6p21.33	LINC01149	rs61447909-A	0.098186	4E-13		1.098901	[1.08-1.14]	Affymetrix [7600000] (imputed)	N
607	chr6_cox_hap2	2922199	2922200	rs2844512	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cervical cancer	967 East Asian ancestry cases, 60,614 East Asian ancestry controls	NA	6p21.33		rs2844512-G	0.576319779	1E-12		0.34585676	[0.25-0.44] unit decrease	Illumina [13381745] (imputed)	N
607	chr6_cox_hap2	2923043	2923044	rs2844510	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls	NA	6p21.33	MICB, MICA	rs2844510-T	0.11	2E-6	(conditioned on rs2596464 and rs2855812)	0.09	[0.051-0.129] unit increase	Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
607	chr6_cox_hap2	2923156	2923157	rs3093958	35074870	Chia R	2022-02-01	Proc Natl Acad Sci U S A	Identification of genetic risk loci and prioritization of genes and pathways for myasthenia gravis: a genome-wide association study.	Early-onset myasthenia gravis	595 European ancestry cases, 2,718 European ancestry controls	NA	6p21.33		rs3093958-G	0.094	4E-42		4.49	[3.62-5.57]	Illumina [24006246] (imputed)	N
607	chr6_cox_hap2	2923156	2923157	rs3093958	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p21.33	NR	rs3093958-?	NR	6E-7		4.984	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
607	chr6_cox_hap2	2923159	2923160	rs6928810	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	6p21.33	HCP5, LINC01149	rs6928810-T	0.246387	1E-14		0.022360196	[0.017-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
607	chr6_cox_hap2	2925062	2925063	rs34624527	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	6p21.33	HCP5, LINC01149	rs34624527-A	0.4973	2E-15		0.02871944	[0.022-0.036] unit increase	Affymetrix [~ 2500000] (imputed)	N
607	chr6_cox_hap2	2925578	2925579	rs2596465	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mononucleosis	17,457 European ancestry cases, 68,446 European ancestry controls	NA	6p21.33	MICA, MICB, HLA	rs2596465-T	0.47	2E-9		1.08	[1.06-1.09]	Illumina [at least 560000] (imputed)	N
607	chr6_cox_hap2	2925591	2925592	rs2596464	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma (childhood onset)	7,131 European ancestry cases, 13,631 European ancestry controls, 1,239 Japanese ancestry cases, 3,976 Japanese ancestry controls, 606 Latino cases, 792 Latino controls	NA	6p21.33	MICB, MICA	rs2596464-C	NR	1E-8		1.12	[1.08-1.17]	Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
607	chr6_cox_hap2	2925591	2925592	rs2596464	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls	NA	6p21.33	MICA, MICB	rs2596464-C	0.48	2E-13		0.09	[0.07-0.11] unit increase	Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
607	chr6_cox_hap2	2926148	2926149	rs41287767	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28- CD8+ T cell %T cell	3,440 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs41287767-T	0.43459	5E-8		0.1673	[0.11-0.23] unit decrease	Illumina [18357815] (imputed)	N
607	chr6_cox_hap2	2926336	2926337	rs56263516	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Uterine fibroids	21,024 European ancestry cases, 237,694 European ancestry controls, 14,475 East Asian ancestry cases, 65,733 East Asian ancestry controls	NA	6p21.33		rs56263516-G	NR	4E-8		0.0661	[0.042-0.09] unit increase	Affymetrix, Illumina [25795146] (imputed)	N
607	chr6_cox_hap2	2926336	2926337	rs56263516	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCP5, LINC01149	rs56263516-G	NR	2E-8		0.0301139	[0.02-0.041] unit increase	Affymetrix [323858] (imputed)	N
607	chr6_cox_hap2	2926336	2926337	rs56263516	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HCP5, LINC01149	rs56263516-G	NR	3E-8		0.0297948	[0.019-0.04] unit increase	Affymetrix [127266] (imputed)	N
607	chr6_cox_hap2	2926438	2926439	rs9267091	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.33	LINC01149, HCP5	rs9267091-A	0.228	9E-6		0.0351	[0.02-0.051] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
607	chr6_cox_hap2	2927986	2927987	rs9267098	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	6p21.33	HCP5	rs9267098-G	0.2684	8E-31		0.04978207	[0.041-0.058] unit decrease	Affymetrix [~ 2500000] (imputed)	N
607	chr6_cox_hap2	2928483	2928484	rs4458721	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.33	NR	rs4458721-T	0.249	3E-10		1.181	[1.13-1.23]	Illumina [11270530] (imputed)	N
607	chr6_cox_hap2	2929622	2929623	rs2524280	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	HLA-C, MICA, Y_RNA, HLA-B, XXbac-BPG248L24.12, MIR6891, HLA-S, XXbac-BPG181B23.7, HCP5, LINC01149, XXbac-BPG181B23.6	rs2524280-A	0.07437186	3E-24	(EA, MHC class I polypeptide-related sequence A)	0.8388	[0.68-1] unit decrease	Affymetrix [509946]	N
607	chr6_cox_hap2	2930088	2930089	rs9501130	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p21.33	LINC01149	rs9501130-G	0.822	2E-11		0.099	[0.07-0.128] unit increase	Affymetrix, Illumina [7374092] (imputed)	N
607	chr6_cox_hap2	2930172	2930173	rs2596459	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD45RA+ CD8+ T cell %T cell	3,427 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs2596459-T	0.49008	2E-8		0.1499	[0.098-0.202] unit increase	Illumina [18349913] (imputed)	N
607	chr6_cox_hap2	2930374	2930375	rs10947210	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	6p21.33		rs10947210-T	0.923561	3E-10		0.0453373	[0.031-0.059] unit decrease	NR [11722792] (imputed)	N
607	chr6_cox_hap2	2930374	2930375	rs10947210	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	6p21.33		rs10947210-T	0.923537	2E-10		0.0471765	[0.033-0.062] unit increase	NR [11722792] (imputed)	N
607	chr6_cox_hap2	2931442	2931443	rs3131623	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p21.33	MICB, MICA, HLA	rs3131623-T	0.85	2E-15		1.1	[1.09-1.12]	Illumina [at least 560000] (imputed)	N
607	chr6_cox_hap2	2931697	2931698	rs3130901	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	6p21.33	NR	rs3130901-T	NR	3E-14		0.0315719	[0.024-0.04] unit increase	Affymetrix [16832071] (imputed)	N
607	chr6_cox_hap2	2932870	2932871	rs2259384	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	6p21.33	HCP5	rs2259384-C	0.484261	6E-11		0.01838512	[0.013-0.024] unit increase	Affymetrix [93095623] (imputed)	N
607	chr6_cox_hap2	2933924	2933925	rs2263316	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Prostate cancer	7,438 White British ancestry cases, 118,206 White British ancestry controls	NA	6p21.33		rs2263316-?	NR	3E-7		1.09455	[1.06-1.13]	NR [680312]	N
607	chr6_cox_hap2	2933924	2933925	rs2263316	29185836	Chen MH	2017-11-29	Platelets	Exome-chip meta-analysis identifies association between variation in ANKRD26 and platelet aggregation.	Platelet aggregation	3,664 European ancestry individuals, 549 Old Order Amish (founder/genetic isolate) individuals	1,184 European ancestry individuals, 613 African American individuals	6p21.33	HCP5	rs2263316-G	0.65	1E-6	(ADP high 2)	0.123	[0.074-0.172] unit increase	Illumina [129094]	N
607	chr6_cox_hap2	2933927	2933928	rs9469012	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	MICA, XXbac-BPG181B23.7, HCP5, Y_RNA, LINC01149, XXbac-BPG181B23.6	rs9469012-A	0.1170535	1E-24	(MHC class I polypeptide-related sequence A)	0.6944	[0.57-0.82] unit decrease	Affymetrix [509946]	N
607	chr6_cox_hap2	2934232	2934234	rs200779223	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	6p21.33	HCP5	rs200779223-C	0.1305	2E-21		0.05074718	[0.04-0.061] unit increase	Affymetrix [~ 2500000] (imputed)	N
607	chr6_cox_hap2	2934232	2934232	rs376918999	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	6p21.33		rs376918999-CAT	0.871308	2E-10		0.0374657	[0.026-0.049] unit increase	NR [11722792] (imputed)	N
607	chr6_cox_hap2	2934232	2934232	rs376918999	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	6p21.33		rs376918999-CAT	0.871308	1E-11		0.0394654	[0.028-0.051] unit increase	NR [11722792] (imputed)	N
607	chr6_cox_hap2	2934235	2934236	rs9267119	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	6p21.33	NR	rs9267119-C	NR	1E-6		1.098901	[NR]	Illumina [7158791] (imputed)	N
607	chr6_cox_hap2	2935149	2935150	rs3131621	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (father's age at death or father's attained age)	up to 699,000 European ancestry individuals	NA	6p21.33	NR	rs3131621-A		9E-9				Illumina [458865]	N
607	chr6_cox_hap2	2935149	2935150	rs3131621	29227965	Pilling LC	2017-12-01	Aging (Albany NY)	Human longevity: 25 genetic loci associated in 389,166 UK biobank participants.	Parental longevity (father's attained age)	415,311 British ancestry individuals	NA	6p21.33	MICA, MICB	rs3131621-A	0.629	4E-8		0.0124	[0.0081-0.0167] unit decrease	Affymetrix [11535925] (imputed)	N
607	chr6_cox_hap2	2935149	2935150	rs3131621	29227965	Pilling LC	2017-12-01	Aging (Albany NY)	Human longevity: 25 genetic loci associated in 389,166 UK biobank participants.	Parental longevity (combined parental attained age, Martingale residuals)	389,166 British ancestry individuals	NA	6p21.33	MICA, MICB	rs3131621-A	NR	9E-8			[NR]	Affymetrix [11535925] (imputed)	N
607	chr6_cox_hap2	2936615	2936616	rs3093956	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation Hannum age acceleration	34,449 European ancestry individuals	NA	6p21.33	NR	rs3093956-C	0.1858	9E-10		0.2428	[0.17-0.32] unit increase	Affymetrix, Illumina [7565493] (imputed)	N
607	chr6_cox_hap2	2937024	2937025	rs113059562	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.33		rs113059562-C	0.985	2E-24				Affymetrix [10369434] (imputed)	N
607	chr6_cox_hap2	2937043	2937044	rs9267123	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (anilides)	83,218 European ancestry cases, 96,592 European ancestry controls, 4,421 East Asian ancestry cases, 174,305 East Asian ancestry controls	NA	6p21.33		rs9267123-C	NR	4E-14		0.0685	[0.051-0.086] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
607	chr6_cox_hap2	2937043	2937044	rs9267123	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCP5	rs9267123-C	NR	4E-11		0.0255347	[0.018-0.033] unit increase	Affymetrix [321016] (imputed)	N
607	chr6_cox_hap2	2937043	2937044	rs9267123	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	6p21.33	NR	rs9267123-C	0.11	2E-19		1.23	[1.19-1.27]	Illumina [8468885] (imputed)	N
607	chr6_cox_hap2	2937043	2937044	rs9267123	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	6p21.33	HCP5	rs9267123-C	0.1438	4E-6		0.0472	[0.027-0.067] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
607	chr6_cox_hap2	2938620	2938621	rs2596472	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6p21.33	HCP5	rs2596472-A	0.742388	2E-19		0.026717115	[0.021-0.033] unit increase	Affymetrix [93095623] (imputed)	N
607	chr6_cox_hap2	2938640	2938641	rs77349273	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p21.33	NR	rs77349273-T	0.097	2E-10	(IFNAR2_of_CD20p)			Illumina [5084123] (imputed)	N
607	chr6_cox_hap2	2939580	2939581	rs3094228	24586183	Medici M	2014-02-27	PLoS Genet	Identification of novel genetic Loci associated with thyroid peroxidase antibodies and clinical thyroid disease.	Thyroid peroxidase antibody positivity	1,769 European ancestry cases, 16,528 European ancestry controls	922 European ancestry cases, 8,068 European ancestry controls	6p21.33	NR	rs3094228-C		4E-7		1.23	[1.13-1.33]	Affymetrix, Illumina [up to 3437411] (imputed)	N
607	chr6_cox_hap2	2939713	2939714	rs115846244	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p21.33	NR	rs115846244-?	NR	1E-19		0.1926	[0.15-0.23] unit increase	Illumina [at least 560000] (imputed)	N
607	chr6_cox_hap2	2939796	2939797	rs2255001	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MICB	5,365 Icelandic ancestry individuals	NA	6p21.33		rs2255001-C	0.1672	1E-33		0.301259	[0.25-0.35] unit decrease	Illumina [7506463] (imputed)	N
607	chr6_cox_hap2	2940012	2940013	rs4360170	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	6p21.33	HCP5	rs4360170-G	0.051523	3E-15		0.03995371	[0.03-0.05] unit decrease	Affymetrix [93095623] (imputed)	N
607	chr6_cox_hap2	2940012	2940013	rs4360170	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	6p21.33	MICA, MICB, HCP5, HLA	rs4360170-A	0.91	3E-12		1.13	[1.11-1.16]	Illumina [at least 560000] (imputed)	N
607	chr6_cox_hap2	2940452	2940453	rs2596473	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCP5, XXbac-BPG181B23.6	rs2596473-T	NR	7E-15		0.0219013	[0.016-0.027] unit increase	Affymetrix [319769] (imputed)	N
607	chr6_cox_hap2	2940452	2940453	rs2596473	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HCP5, XXbac-BPG181B23.6	rs2596473-T	NR	4E-14		0.021317	[0.016-0.027] unit increase	Affymetrix [319769] (imputed)	N
607	chr6_cox_hap2	2940452	2940453	rs2596473	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HCP5, XXbac-BPG181B23.6	rs2596473-T	NR	5E-16		0.0231073	[0.018-0.029] unit increase	Affymetrix [321169] (imputed)	N
607	chr6_cox_hap2	2940452	2940453	rs2596473	31879980	German CA	2019-12-26	Genet Epidemiol	Ordered multinomial regression for genetic association analysis of ordinal phenotypes at Biobank scale.	Hypertension	30,822 British ancestry normal blood pressure individuals, 25,242 British ancestry elevated blood pressure individuals, 50,461 British ancestry stage 1 hypertension individuals, 75,286 British ancestry stage 2 hypertension individuals, 3,754 British ancestry hypertension crisis individuals	NA	6p21.33	HCP5	rs2596473-?	NR	8E-10		0.0382034	NR unit decrease	Affymetrix [464137]	N
607	chr6_cox_hap2	2941344	2941345	rs2255221	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C4A;C4B	5,353 Icelandic ancestry individuals	NA	6p21.33		rs2255221-T	0.05357	2E-45		0.573646	[0.49-0.65] unit increase	Illumina [7506463] (imputed)	N
607	chr6_cox_hap2	2941344	2941345	rs2255221	21051598	Pereyra F	2010-11-04	Science	The major genetic determinants of HIV-1 control affect HLA class I peptide presentation.	HIV-1 control	516 European cases, 1,196 European controls, 341 African American cases, 892 African American controls, 117 Hispanic cases, 560 Hispanic controls	NA	6p21.33	intergenic	rs2255221-T	0.137	4E-14	(AA)	2.7	[NR]	Illumina [1384048] (imputed)	N
607	chr6_cox_hap2	2941433	2941434	rs2395029	30661239	Nicoletti P	2019-01-19	Clin Pharmacol Ther	Drug-induced injury due to flucloxacillin: relevance of multiple HLA alleles.	Drug-induced liver injury (flucloxacillin)	197 European ancestry cases, 6,835 European ancestry controls	NA	6p21.33		rs2395029-?	0.4	6E-97		35.48	[25.38-49.58]	Illumina [NR] (imputed)	N
607	chr6_cox_hap2	2941433	2941434	rs2395029	21051598	Pereyra F	2010-11-04	Science	The major genetic determinants of HIV-1 control affect HLA class I peptide presentation.	HIV-1 control	516 European cases, 1,196 European controls, 341 African American cases, 892 African American controls, 117 Hispanic cases, 560 Hispanic controls	NA	6p21.33	HLA-B	rs2395029-G	0.032	1E-25	(EA)	5.3	[NR]	Illumina [1384048] (imputed)	N
607	chr6_cox_hap2	2941433	2941434	rs2395029	20041166	Fellay J	2009-12-24	PLoS Genet	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	6p21.33	HCP5, HLA-B	rs2395029-G	0.048	5E-35	(setpoint)	5.8	[NR] % increase	Illumina [NR]	N
607	chr6_cox_hap2	2941433	2941434	rs2395029	20041166	Fellay J	2009-12-24	PLoS Genet	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	6p21.33	HCP5, HLA-B	rs2395029-?	NR	1E-11	(progression)			Illumina [NR]	N
607	chr6_cox_hap2	2941433	2941434	rs2395029	19483685	Daly AK	2009-05-31	Nat Genet	HLA-B*5701 genotype is a major determinant of drug-induced liver injury due to flucloxacillin.	Drug-induced liver injury (flucloxacillin)	58 European ancestry cases, 282 European ancestry controls	NA	6p21.33	HCP5, HLA-B	rs2395029-?	0.05	9E-33		45.0	[19.4-105]	Illumina [866399]	N
607	chr6_cox_hap2	2941433	2941434	rs2395029	19115949	Limou S	2009-01-01	J Infect Dis	Genomewide association study of an AIDS-nonprogression cohort emphasizes the role played by HLA genes (ANRS Genomewide Association Study 02).	AIDS progression	275 European ancestry seropositive non-progressors, 86 European ancestry seropositive rapid progressors, 1,352 European ancestry seronegative controls	(see Fellay 2007)	6p21.33	MCCD1, BAT1, TNF, LTB, HCP5, MICB	rs2395029-G	0.03	3E-19		3.47	[2.39-5.04]	Illumina [291119]	N
607	chr6_cox_hap2	2941433	2941434	rs2395029	18369459	Liu Y	2008-04-04	PLoS Genet	A genome-wide association study of psoriasis and psoriatic arthritis identifies new disease loci.	Psoriasis	218 European ancestry cases, 519 European ancestry controls	1,153 European ancestry cases, 1,217 European ancestry controls	6p21.33	HLA-C	rs2395029-C	0.03	2E-26		4.1	[3.10-5.30]	Illumina [305983]	N
607	chr6_cox_hap2	2941473	2941474	rs2243621	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.33		rs2243621-C	0.848	4E-26				Affymetrix [10369434] (imputed)	N
607	chr6_cox_hap2	2941659	2941660	rs2263318	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.33	NR	rs2263318-A	0.059	1E-19		0.597	[0.49-0.71]	Illumina [11270530] (imputed)	N
607	chr6_cox_hap2	2941778	2941779	rs2284178	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCP5	rs2284178-T	NR	2E-11		0.0209034	[0.015-0.027] unit increase	Affymetrix [323858] (imputed)	N
607	chr6_cox_hap2	2941778	2941779	rs2284178	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HCP5	rs2284178-T	NR	1E-10		0.0200657	[0.014-0.026] unit increase	Affymetrix [127266] (imputed)	N
607	chr6_cox_hap2	2941778	2941779	rs2284178	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCP5	rs2284178-T	NR	5E-15		0.0239755	[0.018-0.03] unit decrease	Affymetrix [323123] (imputed)	N
607	chr6_cox_hap2	2941778	2941779	rs2284178	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	HCP5, XXbac-BPG181B23.6	rs2284178-T	0.4743202	1E-14	(EA, MHC class I polypeptide-related sequence B)	0.3444	[0.26-0.43] unit increase	Affymetrix [509946]	N
607	chr6_cox_hap2	2943211	2943212	rs3094014	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCP5	rs3094014-A	NR	1E-14		0.0276264	[0.021-0.035] unit decrease	Affymetrix [319769] (imputed)	N
607	chr6_cox_hap2	2943211	2943212	rs3094014	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HCP5	rs3094014-A	NR	1E-13		0.0265479	[0.02-0.034] unit decrease	Affymetrix [319769] (imputed)	N
607	chr6_cox_hap2	2943211	2943212	rs3094014	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HCP5	rs3094014-A	NR	1E-14		0.0279942	[0.021-0.035] unit decrease	Affymetrix [321169] (imputed)	N
607	chr6_cox_hap2	2943219	2943220	rs75640364	30298529	Stanaway IB	2018-10-08	Genet Epidemiol	The eMERGE genotype set of 83,717 subjects imputed to ~40 million variants genome wide and association with the herpes zoster medical record phenotype.	Shingles	3,201 European ancestry cases, 34,960 European ancestry controls, 398 African American cases, 5,922 African American controls, 756 Asian ancestry individuals	NA	6p21.33	HCP5	rs75640364-G	0.91	8E-9	(EA)	1.36	NR	Affymetrix, Illumina [39127678] (imputed)	N
607	chr6_cox_hap2	2943365	2943366	rs79022003	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	6p21.33	HCP5	rs79022003-C	0.0275	3E-9		0.06434919	[0.043-0.086] unit decrease	Affymetrix [~ 2500000] (imputed)	N
607	chr6_cox_hap2	2943462	2943463	rs112723370	33105104	Hoi-Yee Li G	2020-12-01	Eur J Endocrinol	Genome-wide meta-analysis reveals novel susceptibility loci for thyrotoxic periodic paralysis.	Thyrotoxic periodic paralysis	319 Chinese ancestry cases, 3,516 Chinese ancestry controls	NA	6p21.33	HCP5	rs112723370-T	0.7932	8E-10		2.569985	2.26932083985339-2.87064883985339	Illumina [7077246] (imputed)	N
607	chr6_cox_hap2	2943462	2943463	rs112723370	33105104	Hoi-Yee Li G	2020-12-01	Eur J Endocrinol	Genome-wide meta-analysis reveals novel susceptibility loci for thyrotoxic periodic paralysis.	Thyrotoxic periodic paralysis	306 Chinese ancestry male cases, 3,516 Chinese ancestry controls	NA	6p21.33	HCP5	rs112723370-T	0.7925	5E-10		2.634254	1.94219737574364-3.57290860725441	Illumina [7076963] (imputed)	N
607	chr6_cox_hap2	2943764	2943765	rs3094604	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p21.33	HCP5	rs3094604-G	NR	8E-9		0.0229124	[0.015-0.031] unit decrease	Affymetrix [323858] (imputed)	N
607	chr6_cox_hap2	2943764	2943765	rs3094604	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Squamous cell lung carcinoma	8,350 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	6p21.33	NR	rs3094604-G	NR	2E-8		0.86	[0.82-0.91]	NR [NR] (imputed)	N
607	chr6_cox_hap2	2943764	2943765	rs3094604	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6p21.33	HCP5	rs3094604-G	0.184684	2E-12		0.02776865	[0.02-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
607	chr6_cox_hap2	2943764	2943765	rs3094604	25344690	Feenstra B	2014-10-26	Nat Genet	Common variants associated with general and MMR vaccine-related febrile seizures.	Febrile seizures (MMR vaccine-related)	929 European ancestry cases, 4,118 European ancestry controls	Up to 408 European ancestry cases, Up to 1,645 European ancestry controls	6p21.33	intergenic	rs3094604-A	0.833	1E-7		1.39	[1.23-1.57]	Illumina [8129524] (imputed)	N
607	chr6_cox_hap2	2943987	2943988	rs2523679	34642315	Ferreiro-Iglesias A	2021-10-12	Nat Commun	Germline determinants of humoral immune response to HPV-16 protect against oropharyngeal cancer.	Human papilloma virus 16 positive oropharyngeal cancer	1,078 European ancestry cases, 5,256 European ancestry controls	NA	6p21.33		rs2523679-T	NR	3E-9		0.5079		Illumina [7574753] (imputed)	N
607	chr6_cox_hap2	2944019	2944020	rs3094013	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.33	TCF19	rs3094013-G	0.8714999999999999	5E-8	(EA, men)	0.0494	[0.032-0.067] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
607	chr6_cox_hap2	2944019	2944020	rs3094013	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6p21.33	TCF19	rs3094013-G	0.8733	2E-6	(EA, men)	0.0486	[0.028-0.069] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
607	chr6_cox_hap2	2944019	2944020	rs3094013	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.33	TCF19	rs3094013-?	0.8714999999999999	8E-7	(EA, men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
607	chr6_cox_hap2	2944019	2944020	rs3094013	26362759	Rothwell S	2015-09-11	Ann Rheum Dis	Dense genotyping of immune-related loci in idiopathic inflammatory myopathies confirms HLA alleles as the strongest genetic risk factor and suggests different genetic background for major clinical subgroups.	Polymyositis	931 European ancestry cases, 15,651 European ancestry controls		6p21.33	HLA	rs3094013-T	0.12	6E-76		2.97	[2.64-3.33]	Illumina [90536]	N
607	chr6_cox_hap2	2944454	2944455	rs2523677	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	6p21.33	HCP5	rs2523677-T	0.079494	1E-12		0.033747673	[0.024-0.043] unit increase	Affymetrix [93095623] (imputed)	N
607	chr6_cox_hap2	2945523	2945524	rs4713466	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCP5	rs4713466-T	NR	4E-8		0.0226314	[0.015-0.031] unit increase	Affymetrix [319769] (imputed)	N
607	chr6_cox_hap2	2945523	2945524	rs4713466	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HCP5	rs4713466-T	NR	3E-8		0.0227762	[0.015-0.031] unit increase	Affymetrix [319769] (imputed)	N
607	chr6_cox_hap2	2945686	2945687	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	VLDL cholesterol levels	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	3E-11		0.0291124	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
607	chr6_cox_hap2	2945686	2945687	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very small VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	2E-19		0.0385398	[0.03-0.047] unit decrease	NR [11722792] (imputed)	N
607	chr6_cox_hap2	2945686	2945687	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large LDL	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	2E-16		0.0354641	[0.027-0.044] unit decrease	NR [11722792] (imputed)	N
607	chr6_cox_hap2	2945686	2945687	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in LDL	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	7E-17		0.035861	[0.027-0.044] unit decrease	NR [11722792] (imputed)	N
607	chr6_cox_hap2	2945686	2945687	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in IDL	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	4E-18		0.0372214	[0.029-0.046] unit decrease	NR [11722792] (imputed)	N
607	chr6_cox_hap2	2945686	2945687	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very small VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	6E-11		0.0281413	[0.02-0.037] unit decrease	NR [11722792] (imputed)	N
607	chr6_cox_hap2	2945686	2945687	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	8E-13		0.0302194	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
607	chr6_cox_hap2	2945686	2945687	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	1E-15		0.0347493	[0.026-0.043] unit decrease	NR [11722792] (imputed)	N
607	chr6_cox_hap2	2945686	2945687	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	2E-12		0.0299561	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
607	chr6_cox_hap2	2945686	2945687	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	2E-10		0.026718	[0.018-0.035] unit decrease	NR [11722792] (imputed)	N
607	chr6_cox_hap2	2945686	2945687	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	6E-14		0.0322744	[0.024-0.041] unit decrease	NR [11722792] (imputed)	N
607	chr6_cox_hap2	2945686	2945687	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very small VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	8E-12		0.0294512	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
607	chr6_cox_hap2	2945686	2945687	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	2E-12		0.0299045	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
607	chr6_cox_hap2	2945686	2945687	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	2E-12		0.0308819	[0.022-0.039] unit decrease	NR [11722792] (imputed)	N
607	chr6_cox_hap2	2945686	2945687	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	3E-13		0.0308617	[0.023-0.039] unit decrease	NR [11722792] (imputed)	N
607	chr6_cox_hap2	2945686	2945687	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	7E-14		0.0323789	[0.024-0.041] unit decrease	NR [11722792] (imputed)	N
607	chr6_cox_hap2	2945686	2945687	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	1E-12		0.03014	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
607	chr6_cox_hap2	2945686	2945687	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	4E-13		0.0307696	[0.022-0.039] unit decrease	NR [11722792] (imputed)	N
607	chr6_cox_hap2	2945686	2945687	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	8E-13		0.0311502	[0.023-0.04] unit decrease	NR [11722792] (imputed)	N
607	chr6_cox_hap2	2945686	2945687	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very small VLDL particles	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	9E-10		0.0264832	[0.018-0.035] unit decrease	NR [11722792] (imputed)	N
607	chr6_cox_hap2	2945686	2945687	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large VLDL particles	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	8E-13		0.0301814	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
607	chr6_cox_hap2	2945686	2945687	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small VLDL particles	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	1E-15		0.0345389	[0.026-0.043] unit decrease	NR [11722792] (imputed)	N
607	chr6_cox_hap2	2945686	2945687	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large VLDL particles	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	7E-13		0.0303598	[0.022-0.039] unit decrease	NR [11722792] (imputed)	N
607	chr6_cox_hap2	2945686	2945687	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of chylomicrons and extremely large VLDL particles	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	8E-11		0.0273614	[0.019-0.036] unit decrease	NR [11722792] (imputed)	N
607	chr6_cox_hap2	2945686	2945687	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of VLDL particles	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	2E-13		0.0320006	[0.023-0.041] unit decrease	NR [11722792] (imputed)	N
607	chr6_cox_hap2	2945686	2945687	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	4E-9		0.0250628	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
607	chr6_cox_hap2	2945686	2945687	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	6E-12		0.0296805	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
607	chr6_cox_hap2	2945686	2945687	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	1E-11		0.0297703	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
607	chr6_cox_hap2	2945686	2945687	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	2E-12		0.030433	[0.022-0.039] unit decrease	NR [11722792] (imputed)	N
607	chr6_cox_hap2	2945686	2945687	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	5E-12		0.0292494	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
607	chr6_cox_hap2	2945686	2945687	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	1E-12		0.0304211	[0.022-0.039] unit decrease	NR [11722792] (imputed)	N
607	chr6_cox_hap2	2945686	2945687	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	7E-11		0.0286405	[0.02-0.037] unit decrease	NR [11722792] (imputed)	N
607	chr6_cox_hap2	2945686	2945687	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	6E-13		0.0309269	[0.023-0.039] unit decrease	NR [11722792] (imputed)	N
607	chr6_cox_hap2	2945686	2945687	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	2E-12		0.0297343	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
607	chr6_cox_hap2	2946118	2946119	rs77523206	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	6p21.33	NR	rs77523206-?	NR	1E-93		20.529	NR z score increase	Illumina [at least 830937] (imputed)	N
607	chr6_cox_hap2	2946648	2946649	rs2523673	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.33		rs2523673-T	0.539	1E-32				Affymetrix [10369434] (imputed)	N
607	chr6_cox_hap2	2946648	2946649	rs2523673	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.33		rs2523673-T	0.539	4E-28				Affymetrix [10369434] (imputed)	N
607	chr6_cox_hap2	2946648	2946649	rs2523673	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	6p21.33	HCP5	rs2523673-C	0.4598	2E-30		0.04180668	[0.035-0.049] unit decrease	Affymetrix [~ 2500000] (imputed)	N
607	chr6_cox_hap2	2947346	2947349	rs139043330	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	133,336 East Asian ancestry individuals	NA	6p21.33		rs139043330-G	0.154197	1E-10		0.0313843	[0.022-0.041] unit decrease	Illumina [13476509] (imputed)	N
607	chr6_cox_hap2	2947896	2947897	rs2596450	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	6p21.33	NR	rs2596450-?	NR	8E-6		0.0425	[0.024-0.061] unit decrease	Illumina [at least 560000] (imputed)	N
607	chr6_cox_hap2	2948021	2948022	rs2244839	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCP5	rs2244839-A	NR	8E-12		0.0228771	[0.016-0.029] unit decrease	Affymetrix [321016] (imputed)	N
607	chr6_cox_hap2	2948043	2948044	rs2596449	26151496	Chen PL	2015-07-07	Nat Commun	Genetic determinants of antithyroid drug-induced agranulocytosis by human leukocyte antigen genotyping and genome-wide association study.	Thionamide-induced agranulocytosis in Graves' disease	21 East Asian ancestry cases with agranulocytosis, 662 East Asian ancestry cases without agranulocytosis	21 East Asian ancestry cases with agranulocytosis, 546 East Asian ancestry cases without agranulocytosis	6p21.33	HLA	rs2596449-A	0.047	2E-13	(trend)	6.35	[3.68-10.96] (allelic)	Affymetrix [522980]	N
607	chr6_cox_hap2	2949312	2949313	rs9688839	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MICB	5,365 Icelandic ancestry individuals	NA	6p21.33		rs9688839-G	0.06745	2E-66		0.633901	[0.56-0.71] unit increase	Illumina [7506463] (imputed)	N
607	chr6_cox_hap2	2949499	2949500	rs3094603	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	6p21.33		rs3094603-G	0.704515	7E-9		0.0251235	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
607	chr6_cox_hap2	2949667	2949668	rs14597	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	6p21.33	NR	rs14597-A	0.433533	3E-9		0.0405708	[0.027-0.054] unit increase	Affymetrix [17914406] (imputed)	N
607	chr6_cox_hap2	2949735	2949736	rs1055569	25897833	Thompson AG	2015-04-21	Transl Psychiatry	Genome-wide association study of behavioural and psychiatric features in human prion disease.	Psychotic symptoms and prion disease	Up to 170 cases, 5,200 controls	NA	6p21.33	HCG26	rs1055569-?	0.291	3E-6		2.36	[1.66-3.35]	Illumina [518938]	N
607	chr6_cox_hap2	2949962	2949963	rs2523659	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large HDL	115,082 European ancestry individuals	NA	6p21.33		rs2523659-T	0.698051	3E-11		0.0290837	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
607	chr6_cox_hap2	2949962	2949963	rs2523659	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCP5	rs2523659-G	NR	4E-8		0.0169129	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
607	chr6_cox_hap2	2950304	2950305	rs3828889	30833571	Wiberg A	2019-03-04	Nat Commun	A genome-wide association analysis identifies 16 novel susceptibility loci for carpal tunnel syndrome.	Carpal tunnel syndrome	12,312 European ancestry cases, 389,344 European ancestry controls	NA	6p21.33	Intergenic	rs3828889-C	0.732	2E-8		1.09	[1.06-1.12]	Affymetrix [84000000] (imputed)	N
607	chr6_cox_hap2	2950322	2950323	rs3828890	22797727	Okada Y	2012-07-15	Nat Genet	Meta-analysis identifies multiple loci associated with kidney function-related traits in east Asian populations.	Renal function-related traits (sCR)	42,257 East Asian, South Asian, and South East Asian ancestry individuals	19,662 East Asian ancestry individuals	6p21.33	MHC	rs3828890-G	0.11	3E-9		0.0069	[0.0046-0.0092] mg/dl increase	Affymetrix, Illumina [2353587] (imputed)	N
607	chr6_cox_hap2	2950322	2950323	rs3828890	22797727	Okada Y	2012-07-15	Nat Genet	Meta-analysis identifies multiple loci associated with kidney function-related traits in east Asian populations.	Renal function-related traits (eGRFcrea)	42,451 East Asian, South Asian, and South East Asian ancestry individuals	19,636 East Asian ancestry individuals	6p21.33	MHC	rs3828890-G	0.11	1E-9		0.0079	[0.0054-0.0105] ml/min/1.73m2 decrease	Affymetrix, Illumina [2353587] (imputed)	N
607	chr6_cox_hap2	2950622	2950622	rs9281492	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.33	HCP5	rs9281492-A	0.7482	1E-6		0.041	[0.024-0.058] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
607	chr6_cox_hap2	2951002	2951003	rs4413654	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCP5	rs4413654-A	NR	2E-9		0.0202622	[0.014-0.027] unit decrease	Affymetrix [321016] (imputed)	N
607	chr6_cox_hap2	2951336	2951337	rs145038238	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Treatment or medication use - levothyroxine sodium (UKB data field 20003_1141191044)	18,688 European ancestry cases, 437,588 European ancestry controls	NA	6p21.33		rs145038238-A	0.003929	1E-9		0.54	[0.36-0.72] unit increase	NR [11842647] (imputed)	N
607	chr6_cox_hap2	2952384	2952385	rs2844503	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCP5	rs2844503-A	NR	2E-11		0.0191544	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
607	chr6_cox_hap2	2952384	2952385	rs2844503	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HCP5	rs2844503-A	NR	6E-11		0.0185817	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
607	chr6_cox_hap2	2952384	2952385	rs2844503	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCP5	rs2844503-A	NR	2E-11		0.0189754	[0.013-0.025] unit decrease	Affymetrix [321016] (imputed)	N
607	chr6_cox_hap2	2952384	2952385	rs2844503	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCP5	rs2844503-A	NR	4E-10		0.0193246	[0.013-0.025] unit decrease	Affymetrix [323123] (imputed)	N
607	chr6_cox_hap2	2952384	2952385	rs2844503	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HCP5	rs2844503-A	NR	3E-10		0.018057	[0.012-0.024] unit increase	Affymetrix [321169] (imputed)	N
607	chr6_cox_hap2	2952435	2952436	rs3131643	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Creatinine levels	110,051 European ancestry individuals	NA	6p21.33		rs3131643-G	0.840442	8E-10		0.0296468	[0.02-0.039] unit decrease	NR [11722792] (imputed)	N
607	chr6_cox_hap2	2952435	2952436	rs3131643	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.33		rs3131643-G	0.84	2E-102				Affymetrix [10369434] (imputed)	N
607	chr6_cox_hap2	2952435	2952436	rs3131643	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p21.33	HCP5	rs3131643-A	0.158883	4E-12		0.027895512	[0.02-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
607	chr6_cox_hap2	2952435	2952436	rs3131643	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.33	HCP5	rs3131643-A	0.15885	1E-15		0.04733108	[0.036-0.059] unit decrease	Affymetrix [93095623] (imputed)	N
607	chr6_cox_hap2	2952435	2952436	rs3131643	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count (basophil)	171,846 European ancestry individuals	NA	6p21.33	HCP5	rs3131643-A	0.1597	2E-24		0.04853096	[0.039-0.058] unit decrease	Affymetrix [~ 2500000] (imputed)	N
607	chr6_cox_hap2	2952435	2952436	rs3131643	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	6p21.33	HCP5	rs3131643-A	0.1597	4E-107		0.1077558	[0.098-0.117] unit decrease	Affymetrix [~ 2500000] (imputed)	N
607	chr6_cox_hap2	2952565	2952566	rs79501286	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Chickenpox	107,769 European ancestry cases, 15,982 European ancestry controls	NA	6p21.33	NR	rs79501286-?	NR	2E-9		0.13	[0.088-0.172] unit increase	Illumina [at least 560000] (imputed)	N
607	chr6_cox_hap2	2954257	2954258	rs2523655	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	150,545 East Asian ancestry individuals	NA	6p21.33		rs2523655-G	0.870322	1E-8		0.0292114	[0.019-0.039] unit decrease	Illumina [13478866] (imputed)	N
607	chr6_cox_hap2	2955167	2955168	rs2523653	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Angina pectoris	14,007 East Asian ancestry cases, 145,158 East Asian ancestry controls	NA	6p21.33		rs2523653-G	0.805782921	3E-12		0.12027492	[0.087-0.154] unit decrease	Illumina [13426705] (imputed)	N
607	chr6_cox_hap2	2955217	2955218	rs17206973	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p21.33	NR	rs17206973-?	NR	2E-22		0.2134	[0.17-0.26] unit decrease	Illumina [at least 560000] (imputed)	N
607	chr6_cox_hap2	2956123	2956124	rs2248372	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCP5	rs2248372-A	NR	4E-8		0.0185638	[0.012-0.025] unit increase	Affymetrix [323858] (imputed)	N
607	chr6_cox_hap2	2956123	2956124	rs2248372	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	HCP5	rs2248372-A	0.3318273	1E-19	(MHC class I polypeptide-related sequence B)	0.4168	[0.33-0.5] unit increase	Affymetrix [509946]	N
607	chr6_cox_hap2	2956453	2956454	rs2248462	22286212	Urayama KY	2012-01-27	J Natl Cancer Inst	Genome-wide association study of classical Hodgkin lymphoma and Epstein-Barr virus status-defined subgroups.	Hodgkin's lymphoma	1,200 European ancestry cases, 6,417 European ancestry controls	563 European ancestry cases, 613 European ancestry controls	6p21.33	MICB	rs2248462-?	NR	7E-16	(Total cHL)	1.64	[1.45-1.85]	Illumina [502514]	N
607	chr6_cox_hap2	2957245	2957246	rs2516513	32376702	Shen J	2020-05-06	mSphere	Genetic Association Reveals Protection against Recurrence of Clostridium difficile Infection with Bezlotoxumab Treatment.	Recurrence of Clostridium difficile infection x bezlotuxumab treatment interaction (2df test)	704 European, African American and Asian ancestry individuals	NA	6p21.33	NR	rs2516513-T	0.41	3E-8				Affymetrix [7570264] (imputed)	N
607	chr6_cox_hap2	2958309	2958310	rs116518228	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCP5	rs116518228-T	NR	2E-8		0.032993	[0.022-0.044] unit decrease	Affymetrix [323123] (imputed)	N
607	chr6_cox_hap2	2958519	2958520	rs3749946	24837172	Juyal G	2014-05-16	Gut	Genome-wide association scan in north Indians reveals three novel HLA-independent risk loci for ulcerative colitis.	Ulcerative colitis	603 North Indian ancestry cases, 622 North Indian ancestry controls	733 North Indian ancestry cases, 1,148 North Indian ancestry controls	6p21.33	3.8-1, HCG26	rs3749946-A	0.07	2E-15		1.97	[1.66-2.33]	Illumina [480391]	N
607	chr6_cox_hap2	2958633	2958634	rs3099844	22399527	Kristiansson K	2012-03-07	Circ Cardiovasc Genet	Genome-wide screen for metabolic syndrome susceptibility Loci reveals strong lipid gene contribution but no evidence for common genetic basis for clustering of metabolic syndrome traits.	Metabolic syndrome	2,637 European ancestry cases, 7,927 European ancestry controls	NA	6p21.33	HCG26, MICB	rs3099844-A	0.08	2E-8	(HDL)	0.15	[NR] mmol/l decrease	Illumina [1257079] (imputed)	N
607	chr6_cox_hap2	2958633	2958634	rs3099844	20662065	Clancy RM	2010-07-26	Arthritis Rheum	Identification of candidate loci at 6p21 and 21q22 in a genome-wide association study of cardiac manifestations of neonatal lupus.	Neonatal lupus	116 European ancestry cases, 3,351 European ancestry controls	NA	6p21.33	NFKBIL1, LTA, AIF1, TNF, LTB	rs3099844-?	0.11	5E-10		3.34	[2.29-4.89]	Illumina [346110]	N
607	chr6_cox_hap2	2958679	2958680	rs2523650	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	6p21.33	HCG26, MICB, HCP5, MCCD1, ATP6V1G2-DDX39B, DDX39B, SNORD117, SNORD84, DDX39B-AS1, ATP6V1G2, NFKBIL1, MICA, LTA, TNF, LTB, LST1, NCR3, HLA-B, AIF1, PRRC2A, SNORA38, MIR6832, BAG6, APOM, C6orf47, GPANK1, CSNK2B, LY6G5B, LY6G5C, ABHD16A, MIR4646, LY6G6F, LY6G6E, LY6G6D, LY6G6C, C6orf25, DDAH2	rs2523650-?		5E-7	(recessive)	0.167	[0.1-0.23] unit decrease	Illumina [1492601] (imputed)	N
607	chr6_cox_hap2	2958679	2958680	rs2523650	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	6p21.33	HCG26, MICB, HCP5, MCCD1, ATP6V1G2-DDX39B, DDX39B, SNORD117, SNORD84, DDX39B-AS1, ATP6V1G2, NFKBIL1, MICA, LTA, TNF, LTB, LST1, NCR3, HLA-B, AIF1, PRRC2A, SNORA38, MIR6832, BAG6, APOM, C6orf47, GPANK1, CSNK2B, LY6G5B, LY6G5C, ABHD16A, MIR4646, LY6G6F, LY6G6E, LY6G6D, LY6G6C, C6orf25, DDAH2	rs2523650-?		3E-6	(additive)	0.121	[0.07-0.172] unit decrease	Illumina [1492601] (imputed)	N
607	chr6_cox_hap2	2958679	2958680	rs2523650	31189108	O'Connor D	2019-06-01	Cell Rep	Common Genetic Variations Associated with the Persistence of Immunity following Childhood Immunization.	Tetanus toxoid IgG concentrations post childhood immunization	549 European ancestry children and adolescents	1,303 European ancestry children and adolescents	6p21.33	NR	rs2523650-?	NR	1E-9		0.1117	[0.076-0.147] unit increase	Illumina [~ 6700000] (imputed)	N
607	chr6_cox_hap2	2959276	2959277	rs2516420	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	6p21.33	MHC	rs2516420-C	0.9263	1E-7		1.1	[1.06-1.13]	Affymetrix, Illumina [16900397] (imputed)	N
607	chr6_cox_hap2	2959298	2959299	rs2523648	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCP5	rs2523648-A	NR	4E-8		0.0208118	[0.013-0.028] unit increase	Affymetrix [323858] (imputed)	N
607	chr6_cox_hap2	2959298	2959299	rs2523648	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HCP5	rs2523648-A	NR	5E-8		0.0207421	[0.013-0.028] unit increase	Affymetrix [127266] (imputed)	N
607	chr6_cox_hap2	2960372	2960373	rs2905752	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	6p21.33	Intergenic	rs2905752-G	NR	2E-7		0.0193848	[0.012-0.027] unit decrease	Illumina [13519193] (imputed)	N
607	chr6_cox_hap2	2960571	2960572	rs2523710	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	Intergenic	rs2523710-A	0.2052314	6E-15	(EA, MHC class I polypeptide-related sequence A)	0.4247	[0.32-0.53] unit decrease	Affymetrix [509946]	N
607	chr6_cox_hap2	2961509	2961510	rs2904602	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCP5	rs2904602-A	NR	1E-9		0.0273048	[0.019-0.036] unit decrease	Affymetrix [321016] (imputed)	N
607	chr6_cox_hap2	2961703	2961704	rs143439747	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs143439747-A	0.049	9E-14	(Natural cytotoxicity triggering receptor 3, NCR3.3003.29.2)	0.42	[0.3-0.54] unit decrease	Affymetrix [10572788] (imputed)	N
607	chr6_cox_hap2	2961703	2961704	rs143439747	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mumps	31,227 European ancestry cases, 54,153 European ancestry controls	NA	6p21.33	NR	rs143439747-?	NR	4E-6		0.1204	[0.069-0.171] unit increase	Illumina [at least 560000] (imputed)	N
607	chr6_cox_hap2	2961767	2961768	rs28525417	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCP5	rs28525417-G	NR	3E-8		0.0185461	[0.012-0.025] unit decrease	Affymetrix [323123] (imputed)	N
607	chr6_cox_hap2	2961767	2961768	rs28525417	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HCP5	rs28525417-G	NR	4E-8		0.0171664	[0.011-0.023] unit increase	Affymetrix [321169] (imputed)	N
607	chr6_cox_hap2	2961956	2961957	rs2905741	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (underestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	6p21.33	NR	rs2905741-?	NR	1E-8		5.689	NR z score increase	Illumina [at least 830937] (imputed)	N
607	chr6_cox_hap2	2962074	2962078	rs144801046	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls, 20,367 East Asian ancestry cases, 158,359 East Asian ancestry controls	NA	6p21.33		rs144801046-C	NR	2E-13		0.1571	[0.12-0.2] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
607	chr6_cox_hap2	2962074	2962078	rs144801046	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (beta blocking agents)	20,367 East Asian ancestry cases, 158,359 East Asian ancestry controls	NA	6p21.33		rs144801046-C	0.072674614	2E-13		0.15705363	[0.12-0.2] unit increase	Illumina [13134967] (imputed)	N
607	chr6_cox_hap2	2962096	2962097	rs2904789	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.33	NR	rs2904789-?	NR	5E-11				Affymetrix [~ 8270000] (imputed)	N
607	chr6_cox_hap2	2962954	2962955	rs2905736	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MICB	5,365 Icelandic ancestry individuals	NA	6p21.33		rs2905736-A	0.0328	1E-193		1.45308	[1.36-1.55] unit increase	Illumina [7506463] (imputed)	N
607	chr6_cox_hap2	2962954	2962955	rs2905736	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	MICB, LST1, HCP5, XXbac-BPG181B23.6, XXbac-BPG16N22.5, DDX39B, ATP6V1G2, TNF, NCR3, PRRC2A, CSNK2B, GPANK1, LY6G5B, CLIC1, MSH5, VARS, Y_RNA, PPIAP9, RPL15P4, MCCD1, SNORD117, ATP6V1G2-DDX39B, AL662801.1, DDX39B-AS1, SNORD84, NFKBIL1, LTB, LTA, SNORA38, BAG6, CSNK2B-LY6G5B--991, C6orf47-AS1, C6orf47, MSH5-SAPCD1	rs2905736-A	0.03109328	2E-27	(EA, MHC class I polypeptide-related sequence B)	1.367	[1.13-1.61] unit increase	Affymetrix [509946]	N
607	chr6_cox_hap2	2963211	2963212	rs2428501	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.33	Intergenic	rs2428501-G	NR	1E-6	(men)	0.0231006	[0.014-0.032] unit decrease	Illumina [13520550] (imputed)	N
607	chr6_cox_hap2	2964026	2964027	rs144596166	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MICB	rs144596166-G	NR	4E-8		0.0340564	[0.022-0.046] unit decrease	Affymetrix [321016] (imputed)	N
607	chr6_cox_hap2	2965214	2965215	rs9267235	31235810	Fung K	2019-06-24	Sci Rep	Genome-wide association study identifies loci for arterial stiffness index in 127,121 UK Biobank participants.	Arterial stiffness index	127,121 European ancestry individuals	NA	6p21.33	MICB	rs9267235-T	0.954	7E-6		0.044	[0.024-0.064] unit increase	Affymetrix [~ 10446505] (imputed)	N
607	chr6_cox_hap2	2965797	2965798	rs28664826	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs28664826-A	0.396	1E-46	(MHC class I polypeptide-related sequence B, MICB.5102.55.3)	0.38	[0.32-0.44] unit decrease	Affymetrix [10572788] (imputed)	N
607	chr6_cox_hap2	2965951	2965952	rs9267257	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p21.33	NR	rs9267257-?	NR	2E-9		0.0961	[0.065-0.127] unit decrease	Illumina [at least 560000] (imputed)	N
607	chr6_cox_hap2	2967175	2967176	rs150971914	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MICB	rs150971914-T	NR	2E-15		0.0653082	[0.049-0.081] unit decrease	Affymetrix [321016] (imputed)	N
607	chr6_cox_hap2	2967175	2967176	rs150971914	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MICB	rs150971914-T	NR	7E-9		0.0517554	[0.034-0.069] unit decrease	Affymetrix [323123] (imputed)	N
607	chr6_cox_hap2	2968671	2968672	rs2016572	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	6p21.33	NR	rs2016572-G	0.331938	6E-12		0.0260936	[0.019-0.033] unit increase	Affymetrix [16577313] (imputed)	N
607	chr6_cox_hap2	2969031	2969032	rs12192123	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol use disorder	57,564 European ancestry cases, 256,395 European ancestry controls	NA	6p21.33	NR	rs12192123-A	0.2321	2E-8		5.593	[NR] unit decrease	Affymetrix [7003540] (imputed)	N
607	chr6_cox_hap2	2969641	2969642	rs2904783	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p21.33	NR	rs2904783-C	0.402	9E-6	(IFNalpha_STAT1_of_CD4p_T)			Illumina [5084123] (imputed)	N
607	chr6_cox_hap2	2970712	2970713	rs12195665	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MICB	rs12195665-A	NR	3E-10		0.0197044	[0.014-0.026] unit increase	Affymetrix [319769] (imputed)	N
607	chr6_cox_hap2	2970712	2970713	rs12195665	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	MICB	rs12195665-A	NR	4E-10		0.0195546	[0.013-0.026] unit increase	Affymetrix [319769] (imputed)	N
607	chr6_cox_hap2	2970712	2970713	rs12195665	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	MICB	rs12195665-A	NR	2E-12		0.0223504	[0.016-0.029] unit increase	Affymetrix [321169] (imputed)	N
607	chr6_cox_hap2	2970722	2970723	rs12202667	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MICB	rs12202667-C	NR	4E-8		0.018764	[0.012-0.025] unit decrease	Affymetrix [323123] (imputed)	N
607	chr6_cox_hap2	2970801	2970802	rs2904597	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MICB	rs2904597-G	NR	3E-10		0.0229697	[0.016-0.03] unit increase	Affymetrix [323858] (imputed)	N
607	chr6_cox_hap2	2970801	2970802	rs2904597	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	MICB	rs2904597-G	NR	4E-10		0.0228883	[0.016-0.03] unit increase	Affymetrix [127266] (imputed)	N
607	chr6_cox_hap2	2970801	2970802	rs2904597	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.33	MICB	rs2904597-G	NR	4E-11		0.0218802	[0.015-0.028] unit increase	Affymetrix [321114] (imputed)	N
607	chr6_cox_hap2	2971041	2971042	rs2507971	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	6p21.33	MICB	rs2507971-A	0.382584	8E-17		0.022113472	[0.017-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
607	chr6_cox_hap2	2971041	2971042	rs2507971	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	6p21.33	MICB	rs2507971-T	0.6165	3E-49		0.05419588	[0.047-0.061] unit decrease	Affymetrix [~ 2500000] (imputed)	N
607	chr6_cox_hap2	2971161	2971162	rs9267325	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	MICB	rs9267325-C	NR	2E-8		0.0226374	[0.015-0.031] unit increase	Affymetrix [321169] (imputed)	N
607	chr6_cox_hap2	2971227	2971228	rs3094006	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	6p21.33	MICB	rs3094006-C	0.726	1E-12		0.02938566	[0.021-0.037] unit decrease	Affymetrix [~ 2500000] (imputed)	N
607	chr6_cox_hap2	2971380	2971381	rs2395040	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs2395040-A	0.535	6E-23				Affymetrix [10369434] (imputed)	N
607	chr6_cox_hap2	2971380	2971381	rs2395040	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	6p21.33	NR	rs2395040-?	NR	9E-7				Illumina [at least 7383741] (imputed)	N
607	chr6_cox_hap2	2971625	2971626	rs113239947	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	MICB	rs113239947-T	NR	5E-10		0.0206455	[0.014-0.027] unit increase	Affymetrix [321169] (imputed)	N
607	chr6_cox_hap2	2971993	2971994	rs2516411	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MICB	5,339 Icelandic ancestry individuals	NA	6p21.33		rs2516411-A	0.1051	9E-72		0.494444	[0.44-0.55] unit increase	Illumina [7506463] (imputed)	N
607	chr6_cox_hap2	2972275	2972275	rs10661543	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MICB	rs10661543-CAAAA	NR	7E-9		0.0186799	[0.012-0.025] unit increase	Affymetrix [319769] (imputed)	N
607	chr6_cox_hap2	2972275	2972275	rs10661543	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MICB	rs10661543-CAAAA	NR	2E-9		0.0215387	[0.015-0.029] unit increase	Affymetrix [323858] (imputed)	N
607	chr6_cox_hap2	2972275	2972275	rs10661543	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	MICB	rs10661543-CAAAA	NR	1E-8		0.0183279	[0.012-0.025] unit increase	Affymetrix [319769] (imputed)	N
607	chr6_cox_hap2	2972275	2972275	rs10661543	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	MICB	rs10661543-CAAAA	NR	2E-8		0.0201129	[0.013-0.027] unit increase	Affymetrix [127266] (imputed)	N
607	chr6_cox_hap2	2972275	2972275	rs10661543	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MICB	rs10661543-CAAAA	NR	4E-8		0.017737	[0.011-0.024] unit decrease	Affymetrix [321016] (imputed)	N
607	chr6_cox_hap2	2972413	2972413	rs557297301	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	MICB	rs557297301-CGAGGA	NR	4E-8		0.0173075	[0.011-0.023] unit increase	Affymetrix [321169] (imputed)	N
607	chr6_cox_hap2	2972600	2972601	rs2534681	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MICB	rs2534681-A	NR	6E-11		0.0184043	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
607	chr6_cox_hap2	2972600	2972601	rs2534681	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	MICB	rs2534681-A	NR	1E-10		0.0181502	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
607	chr6_cox_hap2	2972600	2972601	rs2534681	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	MICB	rs2534681-A	NR	1E-11		0.0192736	[0.014-0.025] unit increase	Affymetrix [321169] (imputed)	N
607	chr6_cox_hap2	2972600	2972601	rs2534681	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	6p21.33	Intergenic	rs2534681-A	0.4679	1E-10	(MTAG)	0.0106	[0.0073-0.0139] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
607	chr6_cox_hap2	2973049	2973050	rs72844762	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.33		rs72844762-G	0.967	3E-22				Affymetrix [10369434] (imputed)	N
607	chr6_cox_hap2	2973049	2973050	rs72844762	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	6p21.33	MICB	rs72844762-A	0.034026	3E-11		0.042991024	[0.03-0.056] unit increase	Affymetrix [93095623] (imputed)	N
607	chr6_cox_hap2	2973160	2973161	rs2516408	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	MICB	rs2516408-A	NR	1E-10		0.0219255	[0.015-0.029] unit decrease	Affymetrix [127266] (imputed)	N
607	chr6_cox_hap2	2974717	2974718	rs3094005	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	HLA-B, MICB, DDX39B, HCG22, HLA-C, XXbac-BPG248L24.12, ZDHHC20P2, MICA, HCP5, SNORD84, LTB, LTA, LST1, NCR3, HCG27, XXbac-BPG299F13.14, XXbac-BPG299F13.15, XXbac-BPG299F13.16, MIR6891, DHFRP2, RNU6-283P, AL671883.1, FGFR3P1, HLA-S, XXbac-BPG181B23.7, LINC01149, XXbac-BPG181B23.6, Y_RNA, XXbac-BPG16N22.5, PPIAP9, DDX39B-AS1, SNORD117, ATP6V1G2-DDX39B, AL662801.1, ATP6V1G2, NFKBIL1, TNF	rs3094005-T	0.09437751	4E-38	(MHC class I polypeptide-related sequence B)	0.9308	[0.8-1.07] unit decrease	Affymetrix [509946]	N
607	chr6_cox_hap2	2974773	2974774	rs2534674	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	MICB, Y_RNA	rs2534674-T	0.3517588	7E-16	(EA, MHC class I polypeptide-related sequence B)	0.3579	[0.27-0.44] unit increase	Affymetrix [509946]	N
607	chr6_cox_hap2	2975725	2975726	rs3828919	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	6p21.33	MICB	rs3828919-A	0.044243	9E-12		0.038664818	[0.028-0.05] unit increase	Affymetrix [93095623] (imputed)	N
607	chr6_cox_hap2	2975885	2975886	rs41293864	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Strep throat	52,487 European ancestry cases, 22,017 European ancestry controls	NA	6p21.33	NR	rs41293864-?	NR	2E-8		0.0446	[0.029-0.06] unit increase	Illumina [at least 560000] (imputed)	N
607	chr6_cox_hap2	2975940	2975941	rs9267374	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MICB	rs9267374-C	NR	1E-11		0.0224498	[0.016-0.029] unit decrease	Affymetrix [323123] (imputed)	N
607	chr6_cox_hap2	2977865	2977866	rs188935761	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 142,336 Japanese ancestry controls	NA	6p21.33	MICB	rs188935761-?	NR	5E-6		0.613998	[0.35-0.88] unit increase	Illumina [19707525] (imputed)	N
607	chr6_cox_hap2	2979245	2979246	rs2534664	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MICB	rs2534664-A	NR	2E-13		0.0226003	[0.017-0.029] unit decrease	Affymetrix [323123] (imputed)	N
607	chr6_cox_hap2	2981469	2981470	rs2855811	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.33	NR	rs2855811-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
607	chr6_cox_hap2	2982390	2982391	rs2855812	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.33	NR	rs2855812-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
607	chr6_cox_hap2	2982390	2982391	rs2855812	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma and major depressive disorder	46,802 European ancestry asthma cases, 59,851 European ancestry major depressive disorder cases, 460,635 European ancestry controls	NA	6p21.33	AIF1, APOM, ATP6V1G2, BAG6, C6orf15, C6orf25, C6orf47, C6orf48, CDSN, CLIC1, CSNK2B, DDAH2, DDX39B, HCG26, HCG27, HCP5, HLA-B, HSPA1A, HSPA1B, HSPA1L, LSM2, LST1, LTA, LTB, LY6G5B, LY6G5C, LY6G6C, LY6G6D, LY6G6E, LY6G6F, MCCD1, MICA, MICB, MIR4646, MIR6832, MIR6891, MSH5, MSH5-SAPCD1, NCR3, NEU1, NFKBIL1, POU5F1, PRRC2A, PSORS1C1, PSORS1C2, PSORS1C3, SAPCD1, SLC44A4, SNORA38, SNORD48, SNORD52, SNORD84, SNORD117, TCF19, TNF, VARS, VWA7, HLA-C, CCHCR1, GPANK1, ABHD16A	rs2855812-?	NR	2E-16				Affymetrix [up to 13554551] (imputed)	N
607	chr6_cox_hap2	2982390	2982391	rs2855812	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma (childhood onset)	9,676 European ancestry cases, 347,481 European ancestry controls	NA	6p21.33	ABHD16A, AIF1, APOM, ATP6V1G2, ATP6V1G2-DDX39B, BAG6, C6orf15, C6orf25, C6orf47, C6orf48, CCHCR1, CDSN, CLIC1, CSNK2B, DDAH2, DDX39B, GPANK1, HCG26, HCG27, HCP5, HLA-B, HLA-C, HSPA1A, HSPA1B, HSPA1L, LSM2, LST1, LTA, LTB, LY6G5B, LY6G5C, LY6G6C, LY6G6D, LY6G6E, LY6G6F, MCCD1, MICA, MICB, MIR4646, MIR6832, MIR6891, MSH5, MSH5-SAPCD1, NCR3, NEU1, NFKBIL1, POU5F1, PRRC2A, PSORS1C1, PSORS1C2, PSORS1C3, SAPCD1, SLC44A4, SNORA38, SNORD48, SNORD52, SNORD84, SNORD117, TCF19, TNF, VARS, VWA7	rs2855812-?	NR	4E-7		0.118096	[0.071-0.165] unit decrease	Affymetrix [8274727] (imputed)	N
607	chr6_cox_hap2	2982390	2982391	rs2855812	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs2855812-G	0.7990625	8E-9	(PDIA5, 5593_11_3)	0.1749456	[0.12-0.23] unit decrease	Illumina [> 1000000] (imputed)	N
607	chr6_cox_hap2	2982390	2982391	rs2855812	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs2855812-G	0.7990625	8E-14	(C4A C4B, 4481_34_2)	0.23044567	[0.17-0.29] unit increase	Illumina [> 1000000] (imputed)	N
607	chr6_cox_hap2	2982390	2982391	rs2855812	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs2855812-G	0.7990625	7E-11	(C2, 3186_2_2)	0.20260093	[0.14-0.26] unit decrease	Illumina [> 1000000] (imputed)	N
607	chr6_cox_hap2	2982390	2982391	rs2855812	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs2855812-G	0.7990625	5E-9	(PILRA, 8683_119_3)	0.17610262	[0.12-0.24] unit decrease	Illumina [> 1000000] (imputed)	N
607	chr6_cox_hap2	2982390	2982391	rs2855812	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs2855812-G	0.7990625	3E-25	(ISG15, 14148_2_3)	0.31585807	[0.26-0.37] unit decrease	Illumina [> 1000000] (imputed)	N
607	chr6_cox_hap2	2982390	2982391	rs2855812	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs2855812-G	0.7990625	2E-9	(RACGAP1, 13587_10_3)	0.18150227	[0.12-0.24] unit decrease	Illumina [> 1000000] (imputed)	N
607	chr6_cox_hap2	2982390	2982391	rs2855812	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs2855812-G	0.7990625	2E-25	(MICB, 9328_55_3)	0.31198063	[0.25-0.37] unit increase	Illumina [> 1000000] (imputed)	N
607	chr6_cox_hap2	2982390	2982391	rs2855812	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs2855812-G	0.7990625	2E-19	(FTMT, 8048_9_3)	0.27116117	[0.21-0.33] unit increase	Illumina [> 1000000] (imputed)	N
607	chr6_cox_hap2	2982390	2982391	rs2855812	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs2855812-G	0.7990625	2E-126	(MICB, 5102_55_3)	0.69572484	[0.64-0.75] unit increase	Illumina [> 1000000] (imputed)	N
607	chr6_cox_hap2	2982390	2982391	rs2855812	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs2855812-G	0.7990625	1E-10	(CREB3L4, 11308_8_3)	0.18975821	[0.13-0.25] unit decrease	Illumina [> 1000000] (imputed)	N
607	chr6_cox_hap2	2982390	2982391	rs2855812	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls, 2,149 African ancestry cases, 6,055 African ancestry controls, 1,239 Japanese ancestry cases, 3,976 Japanese ancestry controls, 606 Latino cases, 792 Latino controls	NA	6p21.33	MICB, HCP5, MCCD1	rs2855812-T	0.23	9E-12		1.1	[1.07-1.13]	Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
607	chr6_cox_hap2	2982390	2982391	rs2855812	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls	NA	6p21.33	MICB, MICA, MCCD1	rs2855812-T	0.23	3E-10		0.09	[0.07-0.11] unit increase	Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
607	chr6_cox_hap2	2982390	2982391	rs2855812	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p21.33	NR	rs2855812-?	NR	1E-16		0.213	[0.16-0.26] unit increase	Illumina [at least 560000] (imputed)	N
607	chr6_cox_hap2	2982390	2982391	rs2855812	28235828	Traglia M	2017-04-03	G3 (Bethesda)	Independent Maternal and Fetal Genetic Effects on Midgestational Circulating Levels of Environmental Pollutants.	Midgestational circulating levels of PBDEs	329 Hispanic mothers, 273 European ancestry mothers, 122 Asian ancestry mothers, 23 South Asian ancestry mothers, 21 African American mothers, 22 other ancestry mothers	NA	6p21.33	MICB	rs2855812-?		8E-7	(BDE-47)	0.33	[0.19-0.47] unit decrease	Affymetrix [629686]	N
607	chr6_cox_hap2	2982390	2982391	rs2855812	28235828	Traglia M	2017-04-03	G3 (Bethesda)	Independent Maternal and Fetal Genetic Effects on Midgestational Circulating Levels of Environmental Pollutants.	Midgestational circulating levels of PBDEs	329 Hispanic mothers, 273 European ancestry mothers, 122 Asian ancestry mothers, 23 South Asian ancestry mothers, 21 African American mothers, 22 other ancestry mothers	NA	6p21.33	MICB	rs2855812-?		3E-7	(BDE-100)	0.35	[0.21-0.49] unit decrease	Affymetrix [629686]	N
607	chr6_cox_hap2	2982390	2982391	rs2855812	28235828	Traglia M	2017-04-03	G3 (Bethesda)	Independent Maternal and Fetal Genetic Effects on Midgestational Circulating Levels of Environmental Pollutants.	Midgestational circulating levels of PBDEs	329 Hispanic mothers, 273 European ancestry mothers, 122 Asian ancestry mothers, 23 South Asian ancestry mothers, 21 African American mothers, 22 other ancestry mothers	NA	6p21.33	MICB	rs2855812-?		2E-6	(Sum PBDE)	0.29	[0.17-0.41] unit decrease	Affymetrix [629686]	N
607	chr6_cox_hap2	2982390	2982391	rs2855812	21946350	Soler Artigas M	2011-09-25	Nat Genet	Genome-wide association and large-scale follow up identifies 16 new loci influencing lung function.	Pulmonary function	48,201 European ancestry individuals	46,411 European ancestry individuals	6p21.33	MICB	rs2855812-T	NR	2E-7	(FEV1)	0.03	[0.018-0.042] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
607	chr6_cox_hap2	2983627	2983628	rs3134900	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MICB	5,365 Icelandic ancestry individuals	NA	6p21.33		rs3134900-G	0.08239	7E-220		1.01394	[0.95-1.08] unit decrease	Illumina [7506463] (imputed)	N
607	chr6_cox_hap2	2983627	2983628	rs3134900	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	MICB	rs3134900-G	0.14	3E-101	(MHC class I polypeptide-related sequence B, MICB.5102.55.3)	0.71	[0.65-0.77] unit decrease	Affymetrix [10572788] (imputed)	N
607	chr6_cox_hap2	2984490	2984491	rs41293883	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Eczema	7,884 European ancestry cases, 239,773 European ancestry controls	21,000 cases, 96,000 controls	6p21.33	HLA-DQB1	rs41293883-?	0.95847	2E-14		1.4541224	[1.33-1.6]	Affymetrix [15688218] (imputed)	N
607	chr6_cox_hap2	2984726	2984727	rs41273040	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	6p21.33	MICB	rs41273040-G	0.976386	4E-18		0.0571663	[0.044-0.07] unit decrease	Affymetrix [NR] (imputed)	N
607	chr6_cox_hap2	2984726	2984727	rs41273040	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.33	NR	rs41273040-?	NR	6E-9				Affymetrix [~ 8270000] (imputed)	N
607	chr6_cox_hap2	2984797	2984798	rs3131638	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	6p21.33	NR	rs3131638-G	0.7739	8E-10		1.0449321	[1.03-1.06]	Affymetrix, Illumina [NR] (imputed)	N
607	chr6_cox_hap2	2985156	2985157	rs3132468	22001756	Khor CC	2011-10-16	Nat Genet	Genome-wide association study identifies susceptibility loci for dengue shock syndrome at MICB and PLCE1.	Dengue shock syndrome	2,008 Vietnamese ancestry child cases, 2,018 Vietnamese ancestry child controls	1,737 Vietnamese ancestry child cases, 2,934 Vietnamese ancestry child controls	6p21.33	MICB	rs3132468-?	0.13	4E-11		1.34	[1.23-1.46]	Illumina [481342]	N
607	chr6_cox_hap2	2985325	2985326	rs9380260	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MICB	rs9380260-A	NR	1E-12		0.0271773	[0.02-0.035] unit decrease	Affymetrix [323123] (imputed)	N
607	chr6_cox_hap2	2985967	2985968	rs62395355	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.33		rs62395355-C	0.821	9E-12				Affymetrix [10369434] (imputed)	N
607	chr6_cox_hap2	2985967	2985968	rs62395355	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MICB	rs62395355-A	NR	4E-12		0.0253688	[0.018-0.033] unit increase	Affymetrix [319769] (imputed)	N
607	chr6_cox_hap2	2985967	2985968	rs62395355	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	MICB	rs62395355-A	NR	8E-12		0.0250776	[0.018-0.032] unit increase	Affymetrix [319769] (imputed)	N
607	chr6_cox_hap2	2985967	2985968	rs62395355	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	MICB	rs62395355-A	NR	3E-10		0.0233476	[0.016-0.031] unit increase	Affymetrix [321169] (imputed)	N
607	chr6_cox_hap2	2986128	2986129	rs3130614	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	6p21.33	NR	rs3130614-A	0.119161214504899	1E-11		0.013812465	[0.0098-0.0178] unit decrease	NR [NR]	N
607	chr6_cox_hap2	2986128	2986129	rs3130614	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	6p21.33	NR	rs3130614-A	0.119161214504899	9E-11		0.017454144	[0.012-0.023] unit decrease	NR [NR]	N
607	chr6_cox_hap2	2986128	2986129	rs3130614	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	6p21.33	NR	rs3130614-A	0.119161214504899	1E-10		0.014875911	[0.01-0.019] unit decrease	NR [NR]	N
607	chr6_cox_hap2	2986128	2986129	rs3130614	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	6p21.33	NR	rs3130614-A	0.119161214504899	1E-11		0.011892368	[0.0085-0.0153] unit decrease	NR [NR]	N
607	chr6_cox_hap2	2986128	2986129	rs3130614	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	6p21.33	MICB	rs3130614-T	NR	3E-10		0.19759	[0.14-0.26] unit increase	Illumina [at least 950000] (imputed)	N
607	chr6_cox_hap2	2986128	2986129	rs3130614	26291516	Miller FW	2015-08-20	Genes Immun	Genome-wide association study identifies HLA 8.1 ancestral haplotype alleles as major genetic risk factors for myositis phenotypes.	Myositis	1,710 European ancestry cases, 4,724 European ancestry controls	NA	6p21.33	MICB	rs3130614-A	NR	4E-48		2.31	[NR]	Illumina [NR] (imputed)	N
607	chr6_cox_hap2	2986524	2986525	rs2844498	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MICB	rs2844498-T	NR	7E-13		0.0226459	[0.016-0.029] unit increase	Affymetrix [323858] (imputed)	N
607	chr6_cox_hap2	2986524	2986525	rs2844498	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	MICB	rs2844498-T	NR	8E-12		0.0215973	[0.015-0.028] unit increase	Affymetrix [127266] (imputed)	N
607	chr6_cox_hap2	2988619	2988620	rs9267431	33692975	Buda P	2021-02-22	Front Pediatr	Association Between rs12037447, rs146732504, rs151078858, rs55723436, and rs6094136 Polymorphisms and Kawasaki Disease in the Population of Polish Children.	Kawasaki disease	119 European ancestry cases, 6,071 European ancestry controls	NA	6p21.33	MICB	rs9267431-A	0.1194	2E-6		2.113	1.547-2.886	Illumina [164395]	N
607	chr6_cox_hap2	2988654	2988655	rs2246618	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MICB	rs2246618-T	NR	2E-11		0.0226591	[0.016-0.029] unit decrease	Affymetrix [323858] (imputed)	N
607	chr6_cox_hap2	2988654	2988655	rs2246618	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume (adjusted for hypertension)	46,055 European ancestry individuals, 2,469 African American individuals	NA	6p21.33	MICB	rs2246618-C	0.3118	7E-6		0.0286	[0.016-0.041] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
607	chr6_cox_hap2	2988654	2988655	rs2246618	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume (adjusted for hypertension)	46,055 European ancestry individuals	NA	6p21.33	MICB	rs2246618-C	0.3118	4E-6		0.029	[0.017-0.041] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
607	chr6_cox_hap2	2988654	2988655	rs2246618	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	48,454 European ancestry individuals	NA	6p21.33	MICB	rs2246618-C	0.3118	7E-7		0.0307	[0.019-0.043] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
607	chr6_cox_hap2	2988654	2988655	rs2246618	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	2,516 African American individuals, 48,454 European ancestry individuals	NA	6p21.33	MICB	rs2246618-C	0.3118	2E-6		0.03	[0.018-0.042] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
607	chr6_cox_hap2	2989313	2989314	rs3132463	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MICB	rs3132463-T	NR	5E-9		0.0213533	[0.014-0.028] unit increase	Affymetrix [323123] (imputed)	N
607	chr6_cox_hap2	2990338	2990339	rs3132461	28806749	Leo PJ	2017-08-14	PLoS Genet	Defining the genetic susceptibility to cervical neoplasia-A genome-wide association study.	Cervical cancer	2,866 European ancestry cases, 6,481 European ancestry controls	NA	6p21.33	MICB, MCCD1	rs3132461-G	NR	2E-13		1.358	[NR]	Illumina [10863230] (imputed)	N
607	chr6_cox_hap2	2990762	2990763	rs3132459	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MICB	rs3132459-C	NR	4E-8		0.0179194	[0.012-0.024] unit increase	Affymetrix [321016] (imputed)	N
607	chr6_cox_hap2	2990940	2990940	rs5875324	30787463	Escala-Garcia M	2019-02-21	Br J Cancer	Genome-wide association study of germline variants and breast cancer-specific mortality.	Breast cancer specific mortality in breast cancer	7,697 European ancestry cases, 88,964 European ancestry controls	NA	6p21.33	NR	rs5875324-?	NR	2E-6		0.8744475	[0.83-0.92]	Affymetrix, Illumina [~ 10400000] (imputed)	N
607	chr6_cox_hap2	2990969	2990970	rs2516399	21738478	Okada Y	2011-06-30	PLoS Genet	Identification of nine novel loci associated with white blood cell subtypes in a Japanese population.	White blood cell types	8,794 Japanese ancestry individuals	5,998 Japanese ancestry individuals	6p21.33	MHC	rs2516399-A	0.81	2E-12	(eosinophil count)	0.105	[0.08-0.14] unit increase	Illumina [2178645] (imputed)	N
607	chr6_cox_hap2	2992811	2992812	rs2844495	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG16N22.5	rs2844495-G	NR	2E-18		0.0261655	[0.02-0.032] unit increase	Affymetrix [319769] (imputed)	N
607	chr6_cox_hap2	2992811	2992812	rs2844495	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG16N22.5	rs2844495-G	NR	2E-18		0.0261197	[0.02-0.032] unit increase	Affymetrix [319769] (imputed)	N
607	chr6_cox_hap2	2992811	2992812	rs2844495	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG16N22.5	rs2844495-G	NR	1E-10		0.0210221	[0.015-0.027] unit decrease	Affymetrix [323123] (imputed)	N
607	chr6_cox_hap2	2992811	2992812	rs2844495	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG16N22.5	rs2844495-G	NR	3E-16		0.024738	[0.019-0.031] unit increase	Affymetrix [321169] (imputed)	N
607	chr6_cox_hap2	2992881	2992882	rs62397979	31320639	Hillary RF	2019-07-18	Nat Commun	Genome and epigenome wide studies of neurological protein biomarkers in the Lothian Birth Cohort 1936.	Neurological blood protein biomarker levels	750 European ancestry individuals	NA	6p21.33	XXbac-BPG16N22.5	rs62397979-G	0.0469	1E-26	(Alpha-2-MRAP)	1.36939	[1.12-1.62] unit increase	Illumina [8683751] (imputed)	N
607	chr6_cox_hap2	2993375	2993376	rs17200698	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	Y_RNA, MICB, PPIAP9, XXbac-BPG16N22.5, RPL15P4, MCCD1, ATP6V1G2, ATP6V1G2-DDX39B, NFKBIL1, LST1, NCR3	rs17200698-T	0.0361809	1E-11	(EA, MHC class I polypeptide-related sequence A)	0.813	[0.58-1.04] unit increase	Affymetrix [509946]	N
607	chr6_cox_hap2	2994192	2994193	rs2395045	28031287	Sasayama D	2016-11-26	Hum Mol Genet	Genome-wide quantitative trait loci mapping of the human cerebrospinal fluid proteome.	Cerebrospinal fluid biomarker levels	133 Japanese ancestry individuals.	NA	6p21.33	NR	rs2395045-?	NR	6E-9	(MHC class I polypeptide-related sequence B)			Illumina [514227]	N
607	chr6_cox_hap2	2994358	2994359	rs3131631	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cervical cancer	6,563 European ancestry cases, 410,350 European ancestry controls	NA	6p21.33		rs3131631-G	NR	5E-10		1.1332	NR	Affymetrix [7846216] (imputed)	N
607	chr6_cox_hap2	2994769	2994770	rs2516491	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG16N22.5	rs2516491-C	NR	1E-8		0.0197328	[0.013-0.027] unit decrease	Affymetrix [323858] (imputed)	N
607	chr6_cox_hap2	2995022	2995023	rs3131630	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG16N22.5	rs3131630-G	NR	1E-9		0.0197999	[0.013-0.026] unit decrease	Affymetrix [319769] (imputed)	N
607	chr6_cox_hap2	2995022	2995023	rs3131630	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG16N22.5	rs3131630-G	NR	3E-9		0.019409	[0.013-0.026] unit decrease	Affymetrix [319769] (imputed)	N
607	chr6_cox_hap2	2996072	2996073	rs149066340	30111768	Yao C	2018-08-15	Nat Commun	Genome-wide mapping of plasma protein QTLs identifies putatively causal genes and pathways for cardiovascular disease.	Blood protein levels	6861 European ancestry individuals	4298 European ancestry individuals	6p21.33		rs149066340-C	0.979	1E-36	(C2)	0.92	unit increase	Affymetrix, Illumina [8509364] (imputed)	N
607	chr6_cox_hap2	2997126	2997127	rs34451538	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs34451538-G	0.971	6E-20				Affymetrix [10369434] (imputed)	N
607	chr6_cox_hap2	2997126	2997127	rs34451538	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.33	PPIAP9	rs34451538-A	0.028767	2E-9		0.044486254	[0.03-0.059] unit decrease	Affymetrix [93095623] (imputed)	N
607	chr6_cox_hap2	2997626	2997627	rs3132455	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large HDL	115,082 European ancestry individuals	NA	6p21.33		rs3132455-G	0.653225	3E-10		0.0260764	[0.018-0.034] unit increase	NR [11722792] (imputed)	N
607	chr6_cox_hap2	2999319	2999320	rs3132454	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PPIAP9	rs3132454-G	NR	2E-8		0.0168062	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
607	chr6_cox_hap2	2999319	2999320	rs3132454	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PPIAP9	rs3132454-G	NR	4E-12		0.0205728	[0.015-0.026] unit decrease	Affymetrix [321016] (imputed)	N
607	chr6_cox_hap2	2999319	2999320	rs3132454	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	PPIAP9	rs3132454-G	NR	2E-8		0.0183183	[0.012-0.025] unit decrease	Affymetrix [323123] (imputed)	N
607	chr6_cox_hap2	3000808	3000809	rs3093992	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	PPIAP9	rs3093992-C	NR	3E-8		0.0191109	[0.012-0.026] unit increase	Affymetrix [323123] (imputed)	N
607	chr6_cox_hap2	3001692	3001693	rs114060326	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)(bidirectional)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.33		rs114060326-G	NR	3E-10				Affymetrix [7846216] (imputed)	N
607	chr6_cox_hap2	3002129	3002130	rs3093988	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	RPL15P4	rs3093988-A	NR	8E-12		0.0266126	[0.019-0.034] unit increase	Affymetrix [323123] (imputed)	N
607	chr6_cox_hap2	3002129	3002130	rs3093988	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	316,772 European ancestry male individuals	NA	6p21.33	NR	rs3093988-A	0.1856	8E-20		0.0203	[0.016-0.025] unit decrease	NR [~ 27400000] (imputed)	N
607	chr6_cox_hap2	3005285	3005286	rs2734580	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	RPL15P4	rs2734580-T	NR	8E-16		0.0360498	[0.027-0.045] unit decrease	Affymetrix [323123] (imputed)	N
607	chr6_cox_hap2	3006230	3006231	rs2516482	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.33	MCCD1	rs2516482-G	0.195446	1E-15		0.038059197	[0.029-0.047] unit increase	Affymetrix [93095623] (imputed)	N
607	chr6_cox_hap2	3006586	3006587	rs3093983	33649182	Penova M	2021-03-01	Proc Natl Acad Sci U S A	Genome wide association study of HTLV-1-associated myelopathy/tropical spastic paraparesis in the Japanese population.	HTLV-1 associated myelopathy	731 Japanese ancestry cases, 846 Japanese ancestry controls	NA	6p21.33		rs3093983-G	0.08	4E-7		1.86	[1.47-2.37]	Illumina [126394]	N
607	chr6_cox_hap2	3009264	3009265	rs3853601	22197932	Paternoster L	2011-12-25	Nat Genet	Meta-analysis of genome-wide association studies identifies three new risk loci for atopic dermatitis.	Atopic dermatitis	5,606 European ancestry cases, 20,565 European ancestry controls	5,419 European ancestry cases, 19,833 European ancestry controls	6p21.33	BAT1	rs3853601-G	0.12	2E-6		1.13	[1.08-1.19]	Affymetrix, Illumina [~ 2500000] (imputed)	N
607	chr6_cox_hap2	3013855	3013856	rs114751021	33841421	Li J	2021-03-25	Front Immunol	Variants at the MHC Region Associate With Susceptibility to <i>Clostridioides difficile</i> Infection: A Genome-Wide Association Study Using Comprehensive Electronic Health Records.	Clostridioides difficle infection in antibiotics-users	587 European ancestry cases, 3,166 European ancestry controls	NA	6p21.33	SNORD117	rs114751021-G	0.024	5E-8		2.41	[1.84-3.09]	Illumina [64973696] (imputed)	N
608	chr6_cox_hap2	3015141	3015142	rs2734583	21912425	Tohkin M	2011-09-13	Pharmacogenomics J	A whole-genome association study of major determinants for allopurinol-related Stevens-Johnson syndrome and toxic epidermal necrolysis in Japanese patients.	Stevens-Johnson syndrome and toxic epidermal necrolysis (SJS-TEN)	14 Japanese ancestry cases, 991 Japanese ancestry controls	NA	6p21.33	PSORS1C1, PSORS1C3, BAT1, HLA-C, MICC, PPIAP9, POLR2LP, CCHCR1, TCF19, HLA-B*5801, HCP5, POU5F1	rs2734583-?	0.0055	2E-8		66.8	[19.8-225.0]	Illumina [890321]	N
608	chr6_cox_hap2	3015451	3015452	rs9267485	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	6p21.33	DDX39B	rs9267485-G	NR	2E-17		0.0531442	[0.041-0.065] unit decrease	Illumina [13520550] (imputed)	N
608	chr6_cox_hap2	3016352	3016353	rs2071596	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	6p21.33	DDX39B	rs2071596-A	0.163229	1E-42		0.04289182	[0.037-0.049] unit increase	Affymetrix [93095623] (imputed)	N
608	chr6_cox_hap2	3016352	3016353	rs2071596	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6p21.33	DDX39B	rs2071596-A	0.163228	9E-50		0.046432465	[0.04-0.053] unit increase	Affymetrix [93095623] (imputed)	N
608	chr6_cox_hap2	3016352	3016353	rs2071596	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6p21.33	DDX39B	rs2071596-A	0.163185	2E-27		0.03458288	[0.028-0.041] unit decrease	Affymetrix [93095623] (imputed)	N
608	chr6_cox_hap2	3016352	3016353	rs2071596	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6p21.33	DDX39B	rs2071596-A	0.163195	5E-24		0.030947343	[0.025-0.037] unit increase	Affymetrix [93095623] (imputed)	N
608	chr6_cox_hap2	3017597	3017598	rs2269476	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	6p21.33	DDX39B, ATP6V1G2-DDX39B	rs2269476-A	0.179	2E-24		0.04806173	[0.039-0.057] unit increase	Affymetrix [~ 2500000] (imputed)	N
608	chr6_cox_hap2	3018112	3018113	rs34788230	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	6p21.33	DDX39B	rs34788230-G	0.6263	4E-13		0.02679379	[0.02-0.034] unit decrease	Affymetrix [~ 2500000] (imputed)	N
608	chr6_cox_hap2	3020582	3020583	rs2844509	35023831	Chong M	2022-01-13	Elife	GWAS and ExWAS of blood Mitochondrial DNA copy number identifies 71 loci and highlights a potential causal role in dementia.	Mitochondrial DNA copy number	395,718 British, Irish, Other White, South Asian, African ancestry individuals	NA	6p21.33	NR	rs2844509-G	0.242812	3E-8		0.014	[0.0091-0.0189] unit increase	Affymetrix [23037915] (imputed)	N
608	chr6_cox_hap2	3023060	3023061	rs2239705	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	6p21.33	NR	rs2239705-?		8E-9	(MICA)			Illumina [NR]	N
608	chr6_cox_hap2	3023901	3023902	rs9267488	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p21.33	NR	rs9267488-?	NR	3E-6		4.68	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
608	chr6_cox_hap2	3023901	3023902	rs9267488	26291516	Miller FW	2015-08-20	Genes Immun	Genome-wide association study identifies HLA 8.1 ancestral haplotype alleles as major genetic risk factors for myositis phenotypes.	Myositis	1,710 European ancestry cases, 4,724 European ancestry controls	NA	6p21.33	ATP6V1G2, DDX39B	rs9267488-G	NR	6E-49		2.32	[NR]	Illumina [NR] (imputed)	N
608	chr6_cox_hap2	3024102	3024103	rs34568880	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	6p21.33	ATP6V1G2	rs34568880-C	0.986687	6E-10		0.0562557	[0.038-0.074] unit decrease	Affymetrix [NR] (imputed)	N
608	chr6_cox_hap2	3025416	3025417	rs2239708	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	6p21.33	ATP6V1G2, NFKBIL1	rs2239708-T	0.033249	2E-12		0.04410994	[0.032-0.056] unit increase	Affymetrix [93095623] (imputed)	N
608	chr6_cox_hap2	3025452	3025453	rs2071591	26562150	Seldin MF	2015-10-10	Mol Med	Genome-wide Association Study of Late-Onset Myasthenia Gravis: Confirmation of TNFRSF11A, and Identification of ZBTB10 and Three Distinct HLA Associations.	Late-onset myasthenia gravis	532 European ancestry cases, 2,128 European ancestry controls	NA	6p21.33	MHC_Class III	rs2071591-?	NR	4E-12				Illumina [6175472] (imputed)	N
608	chr6_cox_hap2	3027556	3027557	rs2523501	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (multivariate analysis)	477,968 European ancestry individuals	NA	6p21.33	NFKBIL1	rs2523501-C	0.152	8E-10		0.036	[0.024-0.048] unit decrease	NR [NR] (imputed)	N
608	chr6_cox_hap2	3029306	3029307	rs2516383	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	NFKBIL1	rs2516383-C	NR	3E-9		0.0206882	[0.014-0.027] unit increase	Affymetrix [323123] (imputed)	N
608	chr6_cox_hap2	3030074	3030075	rs6916921	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	LST1, NCR3, ATP6V1G2, TNF, NFKBIL1, LTA, LTB	rs6916921-T	0.1330321	2E-23	(Natural cytotoxicity triggering receptor 3)	0.6188	[0.5-0.74] unit decrease	Affymetrix [509946]	N
608	chr6_cox_hap2	3030304	3030305	rs34492353	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.33	NR	rs34492353-?	NR	1E-13				Affymetrix [~ 8270000] (imputed)	N
608	chr6_cox_hap2	3030304	3030305	rs34492353	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.33	NR	rs34492353-?	NR	6E-12				Affymetrix [~ 8270000] (imputed)	N
608	chr6_cox_hap2	3031241	3031242	rs34268928	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	6p21.33	NFKBIL1	rs34268928-T	0.02077	2E-9		0.04651516	[0.031-0.062] unit decrease	Affymetrix [93095623] (imputed)	N
608	chr6_cox_hap2	3032314	3032315	rs6929796	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	6p21.33	NFKBIL1	rs6929796-A	0.172	3E-8		0.0092	[0.0059-0.0125] unit decrease	Affymetrix, Illumina [33811881] (imputed)	N
608	chr6_cox_hap2	3032314	3032315	rs6929796	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	6p21.33	NFKBIL1	rs6929796-A	0.163327	3E-33		0.036523763	[0.031-0.042] unit increase	Affymetrix [93095623] (imputed)	N
608	chr6_cox_hap2	3032314	3032315	rs6929796	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6p21.33	NFKBIL1	rs6929796-A	0.163358	2E-18		0.030205907	[0.023-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
608	chr6_cox_hap2	3032314	3032315	rs6929796	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	6p21.33	NFKBIL1	rs6929796-A	0.1634	8E-16		0.03895272	[0.029-0.048] unit increase	Affymetrix [~ 2500000] (imputed)	N
608	chr6_cox_hap2	3032314	3032315	rs6929796	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	6p21.33	NFKBIL1	rs6929796-A	0.1635	5E-17		0.04056459	[0.031-0.05] unit increase	Affymetrix [~ 2500000] (imputed)	N
608	chr6_cox_hap2	3032314	3032315	rs6929796	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	6p21.33	NFKBIL1	rs6929796-A	0.1635	7E-11		0.03154443	[0.022-0.041] unit increase	Affymetrix [~ 2500000] (imputed)	N
608	chr6_cox_hap2	3032314	3032315	rs6929796	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	6p21.33	NFKBIL1	rs6929796-A	0.1635	7E-12		0.03316401	[0.024-0.043] unit increase	Affymetrix [~ 2500000] (imputed)	N
608	chr6_cox_hap2	3033314	3033315	rs35597084	32592749	Butler-Laporte G	2020-06-24	Clin Microbiol Infect	Elevated body-mass index is associated with an increased risk of infectious disease admissions and mortality: a mendelian randomization study.	Sepsis (90-day mortality)	341 European ancestry cases, 1,696 European ancestry controls	NA	6p21.33	NFKBIL1	rs35597084-C	0.96	4E-8		0.17	[0.11-0.23] unit decrease	NR [NR]	N
608	chr6_cox_hap2	3034494	3034495	rs2857605	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	6p21.33	NFKBIL1	rs2857605-C	0.21061104132454	6E-14		0.0672	[0.05-0.085] unit decrease	NR [5035015] (imputed)	N
608	chr6_cox_hap2	3035089	3035090	rs2230365	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.33		rs2230365-C	0.859	7E-16				Affymetrix [10369434] (imputed)	N
608	chr6_cox_hap2	3035089	3035090	rs2230365	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	NFKBIL1	rs2230365-T	NR	1E-12		0.0288606	[0.021-0.037] unit decrease	Affymetrix [321016] (imputed)	N
608	chr6_cox_hap2	3035089	3035090	rs2230365	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	NFKBIL1	rs2230365-T	NR	1E-11		0.0299572	[0.021-0.039] unit decrease	Affymetrix [323123] (imputed)	N
608	chr6_cox_hap2	3035089	3035090	rs2230365	26414677	Day FR	2015-11-01	Nat Genet	Large-scale genomic analyses link reproductive aging to hypothalamic signaling, breast cancer susceptibility and BRCA1-mediated DNA repair.	Menopause (age at onset)	up to 69,626 European ancestry women	NA	6p21.33	MSH5, HLA	rs2230365-C	0.84	8E-10		0.17	[0.11-0.23] years decrease	Affymetrix, Illumina [~ 2600000] (imputed)	N
608	chr6_cox_hap2	3037771	3037772	rs4947324	33235445	Lee YJ	2020-11-17	Int J Chron Obstruct Pulmon Dis	A Genome-Wide Association Study in Early COPD: Identification of One Major Susceptibility Loci.	Early chronic obstructive pulmonary disease in never smokers	38 Korean ancestry cases, 1,778 Korean ancestry controls	NA	6p21.33	NFKBIL1	rs4947324-?	NR	8E-6	(PS matching analysis)	4.16	NR	Affymetrix [345072]	N
608	chr6_cox_hap2	3038975	3038976	rs2516392	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.33		rs2516392-G	0.6215470000000001	7E-47		1.0639546	[1.05-1.08]	Affymetrix, Illumina [9851866] (imputed)	N
608	chr6_cox_hap2	3040311	3040312	rs138885312	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs138885312-?		2E-8		1.8	[1.47-2.20]	Illumina [7645193] (imputed)	N
608	chr6_cox_hap2	3040448	3040449	rs28732143	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs28732143-A	0.041	1E-64	(MHC class I polypeptide-related sequence B, MICB.5102.55.3)	1.02	[0.9-1.14] unit increase	Affymetrix [10572788] (imputed)	N
608	chr6_cox_hap2	3042158	3042159	rs111584145	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	6p21.33		rs111584145-G	0.615516	1E-9		0.01450694	[0.0098-0.0192] unit increase	Affymetrix [93095623] (imputed)	N
608	chr6_cox_hap2	3042158	3042159	rs111584145	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6p21.33		rs111584145-G	0.615476	1E-15		0.022145554	[0.017-0.028] unit increase	Affymetrix [93095623] (imputed)	N
608	chr6_cox_hap2	3042451	3042452	rs2857709	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	NFKBIL1	rs2857709-A	NR	5E-10		0.0243153	[0.017-0.032] unit decrease	Affymetrix [319769] (imputed)	N
608	chr6_cox_hap2	3042451	3042452	rs2857709	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	NFKBIL1	rs2857709-A	NR	1E-9		0.0236953	[0.016-0.031] unit decrease	Affymetrix [319769] (imputed)	N
608	chr6_cox_hap2	3043015	3043016	rs2857602	33106546	Johnson TA	2020-10-26	J Hum Genet	Association of an IGHV3-66 gene variant with Kawasaki disease.	Kawasaki disease	1,276 East Asian ancestry cases, 5,086 East Asian ancestry controls	2,152 East Asian ancestry cases, 2,751 East Asian ancestry controls	6p21.33	LTA	rs2857602-A	NR	3E-15		0.78	[0.73-0.83]	Affymetrix, Illumina [6265045] (imputed)	N
608	chr6_cox_hap2	3043015	3043016	rs2857602	32805626	Yuan S	2020-08-14	EBioMedicine	Effects of tumour necrosis factor on cardiovascular disease and cancer: A two-sample Mendelian randomization study.	Tumor necrosis factor levels	30,912 European ancestry individuals	NA	6p21.33	LTA	rs2857602-G	0.38	3E-12		0.032	[0.02-0.044] unit increase	NR [NR]	N
608	chr6_cox_hap2	3044768	3044769	rs190775951	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs190775951-A	0.017	8E-16	(MHC class I polypeptide-related sequence B, MICB.5102.55.3)	0.86	[0.64-1.08] unit increase	Affymetrix [10572788] (imputed)	N
608	chr6_cox_hap2	3047893	3047894	rs3093539	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	6p21.33	ABHD16A, AIF1, APOM, ATP6V1G2, ATP6V1G2-DDX39B, BAG6, C2, C4A, C4B, C4B_2, C6orf25, C6orf47, C6orf48, CFB, CLIC1, CSNK2B, CYP21A1P, CYP21A2, DDAH2, DDX39B, DXO, EHMT2, GPANK1, HSPA1A, HSPA1B, HSPA1L, LOC102060414, LSM2, LST1, LTA, LTB, LY6G5B, LY6G5C, LY6G6C, LY6G6D, LY6G6E, LY6G6F, MCCD1, MICB, MIR1236, MIR4646, MIR6832, MSH5, MSH5-SAPCD1, NCR3, NELFE, NEU1, NFKBIL1, PRRC2A, SAPCD1, SKIV2L, SLC44A4, SNORA38, SNORD48, SNORD52, SNORD84, SNORD117, STK19, TNF, TNXA, TNXB, VARS, VWA7, ZBTB12	rs3093539-G	0.9841	1E-9		1.189845	[1.14-1.24]	Affymetrix [8274727] (imputed)	N
608	chr6_cox_hap2	3048112	3048114	rs736160	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	LTA	rs736160-A	NR	1E-13		0.0220518	[0.016-0.028] unit increase	Affymetrix [319769] (imputed)	N
608	chr6_cox_hap2	3048112	3048114	rs736160	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	LTA	rs736160-A	NR	1E-12		0.0211835	[0.015-0.027] unit increase	Affymetrix [319769] (imputed)	N
608	chr6_cox_hap2	3048112	3048114	rs736160	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	LTA	rs736160-A	NR	7E-14		0.0222905	[0.016-0.028] unit decrease	Affymetrix [321016] (imputed)	N
608	chr6_cox_hap2	3048112	3048114	rs736160	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	LTA	rs736160-A	NR	1E-21		0.0310209	[0.025-0.037] unit decrease	Affymetrix [323123] (imputed)	N
608	chr6_cox_hap2	3048112	3048114	rs736160	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	LTA	rs736160-A	NR	3E-11		0.0199683	[0.014-0.026] unit increase	Affymetrix [321169] (imputed)	N
608	chr6_cox_hap2	3049382	3049383	rs2844482	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	6p21.33	ABHD16A, AIF1, APOM, ATP6V1G2, ATP6V1G2-DDX39B, BAG6, C6orf25, C6orf47, CSNK2B, DDAH2, DDX39B, GPANK1, LST1, LTA, LTB, LY6G5B, LY6G5C, LY6G6C, LY6G6D, LY6G6E, LY6G6F, MCCD1, MICB, MIR4646, MIR6832, NCR3, NFKBIL1, PRRC2A, SNORA38, SNORD84, SNORD117, TNF	rs2844482-T	0.152664	1E-9		1.0639137	[1.04-1.08]	Affymetrix [8274727] (imputed)	N
608	chr6_cox_hap2	3049382	3049383	rs2844482	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Perceived unattractiveness to mosquitoes	16,576 European ancestry individuals	NA	6p21.33	intergenic	rs2844482-T	NR	8E-6		0.145906	[0.082-0.21] unit decrease	Illumina [7433384] (imputed)	N
608	chr6_cox_hap2	3049383	3049384	rs2071590	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	6p21.33	NR	rs2071590-A	0.363817	4E-9		0.042927716	[0.029-0.057] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
608	chr6_cox_hap2	3049383	3049384	rs2071590	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	6p21.33	Intergenic	rs2071590-A	0.378	1E-8		0.0133	[0.0088-0.0178] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
608	chr6_cox_hap2	3049756	3049757	rs2239704	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	6p21.33	LTA	rs2239704-A	0.385621	2E-12		0.01774556	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
608	chr6_cox_hap2	3049756	3049757	rs2239704	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	6p21.33	NR	rs2239704-A	0.384392	1E-14		0.0163675	[0.012-0.021] unit decrease	NR [NR]	N
608	chr6_cox_hap2	3049756	3049757	rs2239704	28806749	Leo PJ	2017-08-14	PLoS Genet	Defining the genetic susceptibility to cervical neoplasia-A genome-wide association study.	Cervical cancer	2,866 European ancestry cases, 6,481 European ancestry controls	NA	6p21.33	TNF	rs2239704-A	NR	6E-9		1.23	[NR]	Illumina [10863230] (imputed)	N
608	chr6_cox_hap2	3050171	3050172	rs2229094	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.33		rs2229094-T	0.746	4E-60				Affymetrix [10369434] (imputed)	N
608	chr6_cox_hap2	3050171	3050172	rs2229094	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	6p21.33		rs2229094-T	0.746	9E-34				Affymetrix [10369434] (imputed)	N
608	chr6_cox_hap2	3050171	3050172	rs2229094	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.33		rs2229094-T	0.746	3E-36				Affymetrix [10369434] (imputed)	N
608	chr6_cox_hap2	3050171	3050172	rs2229094	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	6p21.33		rs2229094-T	0.746	2E-47				Affymetrix [10369434] (imputed)	N
608	chr6_cox_hap2	3050171	3050172	rs2229094	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs2229094-T	0.746	6E-107				Affymetrix [10369434] (imputed)	N
608	chr6_cox_hap2	3050171	3050172	rs2229094	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p21.33		rs2229094-T	0.746	4E-37				Affymetrix [10369434] (imputed)	N
608	chr6_cox_hap2	3050171	3050172	rs2229094	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	6p21.33	LTA	rs2229094-C	0.254265	6E-29		0.029798461	[0.025-0.035] unit increase	Affymetrix [93095623] (imputed)	N
608	chr6_cox_hap2	3050171	3050172	rs2229094	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.33	LTA	rs2229094-C	0.254251	7E-45		0.040826518	[0.035-0.047] unit increase	Affymetrix [93095623] (imputed)	N
608	chr6_cox_hap2	3050171	3050172	rs2229094	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.33	NR	rs2229094-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
608	chr6_cox_hap2	3050171	3050172	rs2229094	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	White blood cell count	8,825 African American individuals, 18,251 Hispanic/Latino individuals, 543 Asian ancestry individuals, 606 Native American ancestry individuals, 383 individuals	NA	6p21.33	NR	rs2229094-?	NR	4E-6		0.01256537	[0.0072-0.0179] unit increase	Illumina [30613845] (imputed)	N
608	chr6_cox_hap2	3050171	3050172	rs2229094	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	6p21.33	LTA	rs2229094-C	0.2537	8E-43		0.0564668	[0.048-0.065] unit increase	Affymetrix [~ 2500000] (imputed)	N
608	chr6_cox_hap2	3050171	3050172	rs2229094	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	6p21.33	LTA	rs2229094-C	0.2536	4E-15		0.03213321	[0.024-0.04] unit increase	Affymetrix [~ 2500000] (imputed)	N
608	chr6_cox_hap2	3050171	3050172	rs2229094	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	6p21.33	LTA	rs2229094-C	0.2535	6E-72		0.07418746	[0.066-0.082] unit increase	Affymetrix [~ 2500000] (imputed)	N
608	chr6_cox_hap2	3050372	3050373	rs2229092	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	LTA	rs2229092-C	NR	5E-9		0.0338477	[0.022-0.045] unit decrease	Affymetrix [321016] (imputed)	N
608	chr6_cox_hap2	3050372	3050373	rs2229092	32641083	Hillary RF	2020-07-08	Genome Med	Multi-method genome- and epigenome-wide studies of inflammatory protein levels in healthy older adults.	Tumor necrosis factor beta levels	982 Scottish ancestry individuals	NA	6p21.33	NR	rs2229092-C	0.05477	5E-31		1.15038	[0.96-1.35] unit decrease	Illumina [7903493] (imputed)	N
608	chr6_cox_hap2	3050572	3050573	rs4647195	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.33	NR	rs4647195-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
608	chr6_cox_hap2	3051923	3051924	rs1799964	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	89,266 East Asian ancestry individuals	NA	6p21.33	NR	rs1799964-T	0.827369	7E-15		0.048854	[0.037-0.061] SD units decrease	Affymetrix, Illumina [16289068] (imputed)	N
608	chr6_cox_hap2	3051923	3051924	rs1799964	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.33	NR	rs1799964-?	NR	1E-11				Affymetrix [~ 8270000] (imputed)	N
608	chr6_cox_hap2	3051923	3051924	rs1799964	21102463	Franke A	2010-11-21	Nat Genet	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry trios	6p21.33	HLA-DQA2, LTA, TNF, LST1, LTB	rs1799964-C	0.209	4E-11		1.19	[1.13-1.25]	Affymetrix, Illumina [953241] (imputed)	N
608	chr6_cox_hap2	3052646	3052647	rs1800629	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	TNF	rs1800629-A	NR	3E-12		0.0274188	[0.02-0.035] unit decrease	Affymetrix [323858] (imputed)	N
608	chr6_cox_hap2	3052646	3052647	rs1800629	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	6p21.33	TNF	rs1800629-A	0.166	8E-19		0.2902	[0.23-0.35] mmHg increase	Affymetrix [NR] (imputed)	N
608	chr6_cox_hap2	3053442	3053443	rs1800610	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NCR3	5,364 Icelandic ancestry individuals	NA	6p21.33		rs1800610-A	0.05852	5E-49		0.548141	[0.48-0.62] unit decrease	Illumina [7506463] (imputed)	N
608	chr6_cox_hap2	3053804	3053805	rs3093662	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	6p21.33	NR	rs3093662-A	0.92	2E-10		0.0223	[0.015-0.029] unit increase	NR [NR]	N
608	chr6_cox_hap2	3054257	3054258	rs3093664	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MICB	5,339 Icelandic ancestry individuals	NA	6p21.33		rs3093664-G	0.08964	1E-117		0.671593	[0.61-0.73] unit increase	Illumina [7506463] (imputed)	N
608	chr6_cox_hap2	3054257	3054258	rs3093664	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p21.33	TNF	rs3093664-G	0.048	3E-7		0.13	[0.081-0.179] unit increase	Affymetrix, Illumina [7374092] (imputed)	N
608	chr6_cox_hap2	3054257	3054258	rs3093664	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs3093664-A	0.916875	8E-64	(MICB, 9328_55_3)	0.73897094	[0.66-0.82] unit decrease	Illumina [> 1000000] (imputed)	N
608	chr6_cox_hap2	3054257	3054258	rs3093664	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs3093664-A	0.916875	8E-11	(C4A C4B, 2182_54_1)	0.29393905	[0.21-0.38] unit increase	Illumina [> 1000000] (imputed)	N
608	chr6_cox_hap2	3054257	3054258	rs3093664	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs3093664-A	0.916875	3E-14	(IL36A, 14150_7_3)	0.34182286	[0.25-0.43] unit increase	Illumina [> 1000000] (imputed)	N
608	chr6_cox_hap2	3054257	3054258	rs3093664	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs3093664-A	0.916875	1E-111	(MICB, 5102_55_3)	0.9721669	[0.89-1.05] unit decrease	Illumina [> 1000000] (imputed)	N
608	chr6_cox_hap2	3054257	3054258	rs3093664	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs3093664-A	0.916875	1E-10	(USP25, 9215_117_3)	0.28181827	[0.2-0.37] unit decrease	Illumina [> 1000000] (imputed)	N
608	chr6_cox_hap2	3056465	3056466	rs1800628	27749845	Lesseur C	2016-10-17	Nat Genet	Genome-wide association analyses identify new susceptibility loci for oral cavity and pharyngeal cancer.	Oral cavity cancer	2,717 European ancestry cases, 273 cases, 5,984 European ancestry controls, 601 controls	NA	6p21.33	MICB, AIF1	rs1800628-A	0.07	7E-8		1.3962	NR	Illumina [7574753] (imputed)	N
608	chr6_cox_hap2	3057129	3057130	rs769178	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs769178-G	0.94078125	8E-31	(NCR3, 3003_29_2)	0.5867702	[0.49-0.69] unit increase	Illumina [> 1000000] (imputed)	N
608	chr6_cox_hap2	3057129	3057130	rs769178	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs769178-G	0.94078125	4E-26	(ISG15, 14148_2_3)	0.54343	[0.44-0.64] unit increase	Illumina [> 1000000] (imputed)	N
608	chr6_cox_hap2	3057129	3057130	rs769178	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs769178-G	0.94078125	3E-10	(TNXB, 5698_60_3)	0.32249722	[0.22-0.42] unit increase	Illumina [> 1000000] (imputed)	N
608	chr6_cox_hap2	3057129	3057130	rs769178	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs769178-G	0.94078125	1E-40	(MICA, 2730_58_2)	0.67921454	[0.58-0.78] unit increase	Illumina [> 1000000] (imputed)	N
608	chr6_cox_hap2	3057129	3057130	rs769178	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs769178-G	0.94078125	1E-33	(C2, 3186_2_2)	0.63008285	[0.53-0.73] unit increase	Illumina [> 1000000] (imputed)	N
608	chr6_cox_hap2	3057226	3057227	rs769177	30226566	Yamada Y	2018-09-04	Int J Mol Med	Identification of 13 novel susceptibility loci for early-onset myocardial infarction, hypertension, or chronic kidney disease.	Hypertension	3,444 Japanese ancestry cases, 4,636 Japanese ancestry controls	NA	6p21.33	Intergenic	rs769177-G	0.8280000000000001	1E-6		1.2345679		Illumina [31276]	N
608	chr6_cox_hap2	3062465	3062466	rs7758790	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.33		rs7758790-T	0.774	1E-27				Affymetrix [10369434] (imputed)	N
608	chr6_cox_hap2	3064745	3064746	rs2256965	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6p21.33		rs2256965-A	0.4188	2E-13		0.0106	[0.0079-0.0133] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
608	chr6_cox_hap2	3065007	3065008	rs2256974	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.33	NR	rs2256974-A	0.375	2E-25		0.842	[0.81-0.88]	Illumina [11270530] (imputed)	N
608	chr6_cox_hap2	3065007	3065008	rs2256974	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Tumor necrosis factor receptor 2 levels	21,758 European ancestry individuals	9,173 individuals	6p21.33		rs2256974-A	0.18	3E-10		0.0632	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
608	chr6_cox_hap2	3065007	3065008	rs2256974	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p21.33	LST1	rs2256974-A	0.173581	3E-16		0.026160087	[0.02-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
608	chr6_cox_hap2	3065007	3065008	rs2256974	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	6p21.33	LST1	rs2256974-A	0.17355	5E-37		0.039224777	[0.033-0.045] unit increase	Affymetrix [93095623] (imputed)	N
608	chr6_cox_hap2	3065095	3065096	rs200801362	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	6p21.33	LST1	rs200801362-T	0.839907	4E-13		0.0188461	[0.014-0.024] unit decrease	Affymetrix [12370749]	N
608	chr6_cox_hap2	3065768	3065768	rs28986170	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FEV1/FVC)	48,943 European ancestry individuals	57,176 European ancestry individuals, 38,199 individuals.	6p21.33	LST1	rs28986170-?	0.752	2E-10	(conditioned on rs2070600, rs9272528)	0.063	[0.043-0.083] unit increase	Affymetrix [27624732] (imputed)	N
608	chr6_cox_hap2	3066192	3066193	rs1052248	33768542	Liu Y	2021-03-26	Clin Pharmacol Ther	Class II HLA Variants Associate with Risk of Pegaspargase Hypersensitivity.	Asparaginase hypersensitivity in acute lymphoblastic leukemia	798 Native American individuals	NA	6p21.33	NR	rs1052248-A	NR	4E-7		2.31	[NR]	Illumina [NR] (imputed)	N
608	chr6_cox_hap2	3066192	3066193	rs1052248	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	6p21.33	Intergenic	rs1052248-A	0.2609	2E-8	(MTAG)	0.0146	[0.0095-0.0197] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
608	chr6_cox_hap2	3066192	3066193	rs1052248	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p21.33	LST1	rs1052248-A	0.28	3E-17		1.05	[1.04-1.06]	Illumina [at least 560000] (imputed)	N
608	chr6_cox_hap2	3066320	3066321	rs986475	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NCR3	rs986475-G	0.071	1E-31	(Natural cytotoxicity triggering receptor 3, NCR3.3003.29.2)	0.55	[0.45-0.65] unit decrease	Affymetrix [10572788] (imputed)	N
608	chr6_cox_hap2	3067102	3067103	rs11575841	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	6p21.33	NR	rs11575841-?	NR	5E-20		9.163	NR z score decrease	Illumina [at least 830937] (imputed)	N
608	chr6_cox_hap2	3067402	3067403	rs11575839	23028341	Yang X	2012-09-13	PLoS Genet	Genome-wide association study for serum complement C3 and C4 levels in healthy Chinese subjects.	Complement C3 and C4 levels	1,999 Han Chinese ancestry male individuals	1,496 Han Chinese ancestry male individuals	6p21.33	HLA-C	rs11575839-A	0.05	1E-54	(Serum level of C4)	0.23	[0.21-0.25] g/L decrease	Illumina [1940245] (imputed)	N
608	chr6_cox_hap2	3067785	3067786	rs148533164	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.33		rs148533164-G	0.952	3E-15				Affymetrix [10369434] (imputed)	N
608	chr6_cox_hap2	3067874	3067875	rs28732145	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p21.33	NR	rs28732145-?	NR	2E-11		0.2045	[0.15-0.26] unit increase	Illumina [at least 560000] (imputed)	N
608	chr6_cox_hap2	3070281	3070282	rs11575837	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6p21.33		rs11575837-?	NR	5E-8		1.20533	[1.14-1.27]	NR [685523]	N
608	chr6_cox_hap2	3070281	3070282	rs11575837	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.33	NR	rs11575837-T	0.012	8E-13		0.58141	[0.42-0.74] unit increase	Affymetrix [up to 8900000] (imputed)	N
608	chr6_cox_hap2	3070958	3070959	rs28732146	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	NCR3	rs28732146-A	NR	1E-11		0.0239586	[0.017-0.031] unit decrease	Affymetrix [321016] (imputed)	N
608	chr6_cox_hap2	3070958	3070959	rs28732146	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	NCR3	rs28732146-A	NR	2E-17		0.0326707	[0.025-0.04] unit decrease	Affymetrix [323123] (imputed)	N
608	chr6_cox_hap2	3071120	3071121	rs9357135	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	6p21.33		rs9357135-T	0.046397421	1E-19		0.60996497	[0.48-0.74] unit increase	Illumina [13429980] (imputed)	N
608	chr6_cox_hap2	3071755	3071756	rs2857599	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	NCR3	rs2857599-A	NR	1E-19		0.0348769	[0.027-0.042] unit decrease	Affymetrix [321016] (imputed)	N
608	chr6_cox_hap2	3071755	3071756	rs2857599	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	6p21.33	Intergenic	rs2857599-G	NR	3E-8		0.0262207	[0.017-0.036] unit increase	Illumina [13519193] (imputed)	N
608	chr6_cox_hap2	3071770	3071771	rs536378929	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	6p21.33	NCR3	rs536378929-T	0.9236	9E-26		0.0494	[0.04-0.059] unit decrease	Affymetrix [18391927] (imputed)	N
608	chr6_cox_hap2	3072220	3072221	rs2515920	30226566	Yamada Y	2018-09-04	Int J Mol Med	Identification of 13 novel susceptibility loci for early-onset myocardial infarction, hypertension, or chronic kidney disease.	Hypertension	3,444 Japanese ancestry cases, 4,636 Japanese ancestry controls	NA	6p21.33	NCR3	rs2515920-T	0.827	5E-7		1.2345679		Illumina [31276]	N
608	chr6_cox_hap2	3072369	3072370	rs3130632	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	NCR3	rs3130632-T	NR	1E-10		0.022096	[0.015-0.029] unit decrease	Affymetrix [319769] (imputed)	N
608	chr6_cox_hap2	3072369	3072370	rs3130632	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	NCR3	rs3130632-T	NR	9E-10		0.0210507	[0.014-0.028] unit decrease	Affymetrix [319769] (imputed)	N
608	chr6_cox_hap2	3072369	3072370	rs3130632	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	NCR3	rs3130632-T	NR	7E-11		0.0226077	[0.016-0.029] unit decrease	Affymetrix [321169] (imputed)	N
608	chr6_cox_hap2	3072372	3072373	rs34744948	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.33	NR	rs34744948-?	NR	4E-11				Affymetrix [~ 8270000] (imputed)	N
608	chr6_cox_hap2	3072833	3072834	rs2857598	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	NCR3	rs2857598-A	NR	4E-15		0.0338966	[0.025-0.042] unit increase	Affymetrix [323123] (imputed)	N
608	chr6_cox_hap2	3072833	3072834	rs2857598	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.33	Intergenic	rs2857598-C	NR	7E-8	(women)	0.0362414	[0.023-0.049] unit decrease	Illumina [13520550] (imputed)	N
608	chr6_cox_hap2	3072833	3072834	rs2857598	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.33	Intergenic	rs2857598-C	NR	5E-11		0.0308295	[0.022-0.04] unit decrease	Illumina [13520550] (imputed)	N
608	chr6_cox_hap2	3072833	3072834	rs2857598	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	6p21.33	Intergenic	rs2857598-C	NR	9E-20		0.0496215	[0.039-0.06] unit decrease	Illumina [13520550] (imputed)	N
608	chr6_cox_hap2	3072845	3072846	rs3132452	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	6p21.33	NR	rs3132452-?	NR	2E-7		0.095	[0.059-0.131] unit increase	Illumina [at least 560000] (imputed)	N
608	chr6_cox_hap2	3073772	3073773	rs2515919	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	NCR3	rs2515919-G	NR	5E-12		0.020055	[0.014-0.026] unit increase	Affymetrix [319769] (imputed)	N
608	chr6_cox_hap2	3073772	3073773	rs2515919	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	NCR3	rs2515919-G	NR	2E-8		0.0182636	[0.012-0.025] unit increase	Affymetrix [323858] (imputed)	N
608	chr6_cox_hap2	3073772	3073773	rs2515919	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	NCR3	rs2515919-G	NR	7E-11		0.0189369	[0.013-0.025] unit increase	Affymetrix [319769] (imputed)	N
608	chr6_cox_hap2	3073772	3073773	rs2515919	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	NCR3	rs2515919-G	NR	2E-10		0.0184288	[0.013-0.024] unit decrease	Affymetrix [321016] (imputed)	N
608	chr6_cox_hap2	3073772	3073773	rs2515919	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	NCR3	rs2515919-G	NR	1E-28		0.0351117	[0.029-0.041] unit decrease	Affymetrix [323123] (imputed)	N
608	chr6_cox_hap2	3073772	3073773	rs2515919	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	NCR3	rs2515919-G	NR	8E-13		0.0210432	[0.015-0.027] unit increase	Affymetrix [321169] (imputed)	N
608	chr6_cox_hap2	3073772	3073773	rs2515919	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	6p21.33	Intergenic	rs2515919-A	0.6258	1E-10	(MTAG)	0.0119	[0.0082-0.0156] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
608	chr6_cox_hap2	3073772	3073773	rs2515919	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	6p21.33	Intergenic	rs2515919-A	0.6255	3E-16	(MTAG)	0.0139	[0.011-0.017] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
608	chr6_cox_hap2	3073772	3073773	rs2515919	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6p21.33	Intergenic	rs2515919-A	0.63	3E-16	(MTAG)	0.0111	[0.0084-0.0138] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
608	chr6_cox_hap2	3074426	3074427	rs2844480	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p21.33	NR	rs2844480-?	NR	2E-18		0.0887	[0.069-0.108] unit increase	Illumina [at least 560000] (imputed)	N
608	chr6_cox_hap2	3074915	3074916	rs150379130	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	NCR3	rs150379130-T	NR	4E-9		0.0270941	[0.018-0.036] unit decrease	Affymetrix [323123] (imputed)	N
608	chr6_cox_hap2	3075142	3075143	rs111728624	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	NCR3	rs111728624-C	NR	3E-11		0.0281508	[0.02-0.036] unit increase	Affymetrix [319769] (imputed)	N
608	chr6_cox_hap2	3075142	3075143	rs111728624	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.33	NCR3	rs111728624-C	NR	2E-8		0.0241088	[0.016-0.032] unit increase	Affymetrix [321114] (imputed)	N
608	chr6_cox_hap2	3075142	3075143	rs111728624	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	NCR3	rs111728624-C	NR	1E-11		0.0289838	[0.021-0.037] unit increase	Affymetrix [321169] (imputed)	N
608	chr6_cox_hap2	3075774	3075775	rs3130631	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p21.33	NR	rs3130631-?	NR	2E-9		0.0861	[0.058-0.115] unit decrease	Illumina [at least 560000] (imputed)	N
608	chr6_cox_hap2	3076446	3076447	rs17200816	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	NCR3	rs17200816-T	NR	2E-11		0.0283425	[0.02-0.037] unit increase	Affymetrix [319769] (imputed)	N
608	chr6_cox_hap2	3077028	3077029	rs2857596	32752121	Nedoszytko B	2020-07-31	Int J Mol Sci	Results from a Genome-Wide Association Study (GWAS) in Mastocytosis Reveal New Gene Polymorphisms Associated with WHO Subgroups.	Systemic mastocytosis	93 European ancestry cases, 5,606 European ancestry controls	NA	6p21.33	NRC3	rs2857596-C	0.2394	2E-10		2.582	[2.28-2.88]	Illumina [281811]	N
608	chr6_cox_hap2	3078075	3078076	rs2857595	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	NCR3	rs2857595-A	NR	3E-11		0.0254138	[0.018-0.033] unit decrease	Affymetrix [127266] (imputed)	N
608	chr6_cox_hap2	3078075	3078076	rs2857595	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FEV1/FVC)	48,943 European ancestry individuals	57,176 European ancestry individuals, 38,199 individuals.	6p21.33	NCR3	rs2857595-A	0.213	4E-9		0.048	[0.032-0.064] unit decrease	Affymetrix [27624732] (imputed)	N
608	chr6_cox_hap2	3078075	3078076	rs2857595	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FEV1)	48,943 European ancestry individuals.	57,176 European ancestry individuals, 38,199 individuals.	6p21.33	NCR3	rs2857595-A	0.21	2E-6		0.039	[0.023-0.055] unit decrease	Affymetrix [up to 27624732] (imputed)	N
608	chr6_cox_hap2	3078075	3078076	rs2857595	25936594	Tomer Y	2015-04-27	J Autoimmun	Genome wide identification of new genes and pathways in patients with both autoimmune thyroiditis and type 1 diabetes.	Type 1 diabetes and autoimmune thyroid diseases	346 European ancestry cases, 727 European ancestry controls	185 European ancestry cases, 340 European ancestry controls	6p21.33	NFKBIL1, LTA, NCR3	rs2857595-T	NR	2E-23		2.3765		Illumina [514008]	N
608	chr6_cox_hap2	3078075	3078076	rs2857595	25194280	Wei Q	2014-09-07	Nat Genet	Genome-wide association study identifies three susceptibility loci for laryngeal squamous cell carcinoma in the Chinese population.	Laryngeal squamous cell carcinoma	993 Chinese ancestry cases, 1,995 Chinese ancestry controls	2,398 Chinese ancestry cases, 2,804 Chinese ancestry controls	6p21.33	AIF1, HLA	rs2857595-?	0.50	2E-15		1.3	[1.22-1.39]	Affymetrix [662108]	N
608	chr6_cox_hap2	3078075	3078076	rs2857595	23284291	Hancock DB	2012-12-20	PLoS Genet	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (smoking interaction)	50,047 European ancestry individuals	NA	6p21.33	NCR3	rs2857595-?	NR	8E-8	(FEV1/FVC, Ever-smoking)			NR [~ 2500000] (imputed)	N
608	chr6_cox_hap2	3078075	3078076	rs2857595	21946350	Soler Artigas M	2011-09-25	Nat Genet	Genome-wide association and large-scale follow up identifies 16 new loci influencing lung function.	Pulmonary function	48,201 European ancestry individuals	46,411 European ancestry individuals	6p21.33	NCR3	rs2857595-G	0.81	2E-10	(FEV1/FVC)	0.037	[0.025-0.049] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
608	chr6_cox_hap2	3078075	3078076	rs2857595	21946350	Soler Artigas M	2011-09-25	Nat Genet	Genome-wide association and large-scale follow up identifies 16 new loci influencing lung function.	Pulmonary function	48,201 European ancestry individuals	46,411 European ancestry individuals	6p21.33	NCR3	rs2857595-G	0.81	1E-6	(FEV1)	0.025	[0.02-0.04] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
608	chr6_cox_hap2	3079125	3079126	rs17207190	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Strep throat	52,487 European ancestry cases, 22,017 European ancestry controls	NA	6p21.33	NR	rs17207190-?	NR	8E-8		0.0766	[0.049-0.105] unit decrease	Illumina [at least 560000] (imputed)	N
608	chr6_cox_hap2	3079309	3079310	rs2507960	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Diastolic blood pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	6p21.33	HLA	rs2507960-A	0.139916952	3E-6		0.1878	[0.11-0.27] unit increase	Affymetrix [~ 9800000] (imputed)	N
608	chr6_cox_hap2	3079506	3079507	rs9267516	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	6p21.33		rs9267516-T	0.364098	1E-16		0.0286201	[0.024-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
608	chr6_cox_hap2	3081940	3081941	rs2736186	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	Intergenic	rs2736186-A	0.03768844	1E-29	(EA, Neutrophil collagenase)	1.233	[1.03-1.44] unit increase	Affymetrix [509946]	N
608	chr6_cox_hap2	3082251	3082252	rs2857594	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	Triglyceride levels	291,107 British ancestry individuals	NA	6p21.33	TBC1D22B	rs2857594-C	0.148615	4E-11		0.01965	[0.014-0.025] unit decrease	Affymetrix [9463307] (imputed)	N
608	chr6_cox_hap2	3082251	3082252	rs2857594	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	Systolic blood pressure	291,107 British ancestry individuals	NA	6p21.33	TBC1D22B	rs2857594-C	0.148615	1E-7		0.36076	[0.23-0.49] unit decrease	Affymetrix [9463307] (imputed)	N
608	chr6_cox_hap2	3082271	3082272	rs41291790	35232999	Garcia-Etxebarria K	2022-03-01	Sci Rep	Local genetic variation of inflammatory bowel disease in Basque population and its effect in risk prediction.	Ulcerative colitis	208 European ancestry cases, 935 European ancestry controls	NA	6p21.33		rs41291790-A	0.022	3E-8		5.3		Illumina [5409651] (imputed)	N
608	chr6_cox_hap2	3082271	3082272	rs41291790	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	334,944 European ancestry, NR ancestry individuals	NA	6p21.33		rs41291790-?	NR	5E-8				Affymetrix [NR] (imputed)	N
608	chr6_cox_hap2	3082563	3082564	rs2844479	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	UQCRHP1	rs2844479-C	NR	4E-14		0.0227975	[0.017-0.029] unit increase	Affymetrix [319769] (imputed)	N
608	chr6_cox_hap2	3082563	3082564	rs2844479	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	UQCRHP1	rs2844479-C	NR	6E-13		0.02173	[0.016-0.028] unit increase	Affymetrix [319769] (imputed)	N
608	chr6_cox_hap2	3082563	3082564	rs2844479	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	UQCRHP1	rs2844479-C	NR	8E-11		0.0195735	[0.014-0.025] unit decrease	Affymetrix [321016] (imputed)	N
608	chr6_cox_hap2	3082563	3082564	rs2844479	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	UQCRHP1	rs2844479-C	NR	1E-14		0.0236304	[0.018-0.03] unit increase	Affymetrix [321169] (imputed)	N
608	chr6_cox_hap2	3082563	3082564	rs2844479	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	6p21.33		rs2844479-C	0.326375	4E-26		0.027727867	[0.023-0.033] unit increase	Affymetrix [93095623] (imputed)	N
608	chr6_cox_hap2	3082563	3082564	rs2844479	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	6p21.33	AIF1	rs2844479-A	0.66	3E-10		1.14	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
608	chr6_cox_hap2	3082563	3082564	rs2844479	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs2844479-C	0.393698650943396	4E-6	(IGP60)	0.151	[0.087-0.215] unit increase	Illumina [~ 2500000] (imputed)	N
608	chr6_cox_hap2	3082563	3082564	rs2844479	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs2844479-C	0.393631380483438	4E-6	(IGP6)	0.1506	[0.086-0.215] unit decrease	Illumina [~ 2500000] (imputed)	N
608	chr6_cox_hap2	3082563	3082564	rs2844479	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs2844479-C	0.393516127507802	9E-6	(IGP61)	0.1445	[0.081-0.208] unit increase	Illumina [~ 2500000] (imputed)	N
608	chr6_cox_hap2	3082563	3082564	rs2844479	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs2844479-C	0.393054780607685	7E-6	(IGP58)	0.1476	[0.083-0.212] unit increase	Illumina [~ 2500000] (imputed)	N
608	chr6_cox_hap2	3082563	3082564	rs2844479	19079260	Thorleifsson G	2008-12-14	Nat Genet	Genome-wide association yields new sequence variants at seven loci that associate with measures of obesity.	Weight	72,598 European ancestry individuals, 1,160 African American individuals	Up to 11,036 European ancestry individuals, 32,615 individuals	6p21.33	AIF1, NCR3	rs2844479-T	0.68	2E-8		3.58	[2.33-4.83] percentage SD increase	Illumina [305846]	N
608	chr6_cox_hap2	3082717	3082718	rs9267517	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	IgD on unswitched memory B cell	3,636 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs9267517-A	0.2447	1E-13		0.2671	[0.2-0.34] unit decrease	Illumina [18230756] (imputed)	N
608	chr6_cox_hap2	3083184	3083185	rs144360625	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	6p21.33		rs144360625-C	0.125812	9E-19		0.029980848	[0.023-0.037] unit increase	Affymetrix [93095623] (imputed)	N
608	chr6_cox_hap2	3083184	3083185	rs144360625	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	6p21.33	NR	rs144360625-?	NR	3E-11	(MIC-A)	0.57967	[0.41-0.75] unit decrease	Illumina [11901634] (imputed)	N
608	chr6_cox_hap2	3083764	3083764	rs144831544	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	UQCRHP1	rs144831544-AAATTAGC	NR	7E-14		0.026213	[0.019-0.033] unit increase	Affymetrix [319769] (imputed)	N
608	chr6_cox_hap2	3083764	3083764	rs144831544	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	UQCRHP1	rs144831544-AAATTAGC	NR	4E-13		0.0254281	[0.019-0.032] unit increase	Affymetrix [319769] (imputed)	N
608	chr6_cox_hap2	3083764	3083764	rs144831544	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	UQCRHP1	rs144831544-AAATTAGC	NR	9E-16		0.0284632	[0.022-0.035] unit increase	Affymetrix [321169] (imputed)	N
608	chr6_cox_hap2	3084146	3084147	rs28895016	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	6p21.33	NCR3, AIF1	rs28895016-C	0.91	9E-16		1.097	[1.07-1.12]	Affymetrix, Illumina [8307659] (imputed)	N
608	chr6_cox_hap2	3084521	3084522	rs28366149	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	UQCRHP1	rs28366149-A	NR	4E-9		0.0225023	[0.015-0.03] unit decrease	Affymetrix [323123] (imputed)	N
608	chr6_cox_hap2	3084694	3084695	rs28474889	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	6p21.33	UQCRHP1	rs28474889-T	0.200504	2E-19		0.025810601	[0.02-0.031] unit increase	Affymetrix [93095623] (imputed)	N
608	chr6_cox_hap2	3084694	3084695	rs28474889	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6p21.33	UQCRHP1	rs28474889-T	0.200511	2E-24		0.02926071	[0.024-0.035] unit increase	Affymetrix [93095623] (imputed)	N
608	chr6_cox_hap2	3084694	3084695	rs28474889	29773799	Horikoshi M	2018-05-17	Nat Commun	Elucidating the genetic architecture of reproductive ageing in the Japanese population.	Menopause (age at onset)	43,861 Japanese ancestry women	32,545 European ancestry women	6p21.33	MSH5 / HLA	rs28474889-C	0.73	5E-16	(japanese)	0.24	[0.18-0.3] year increase	Illumina [at least 532488] (imputed)	N
608	chr6_cox_hap2	3084897	3084898	rs9348876	22936669	Julia A	2012-08-30	Gut	A genome-wide association study on a southern European population identifies a new Crohn's disease susceptibility locus at RBX1-EP300.	Crohn's disease	1,277 European ancestry cases, 1,488 European ancestry controls	1,365 European ancestry cases, 1,396 European ancestry controls	6p21.33	AIF1	rs9348876-T	0.06	3E-6		1.41	[1.22-1.63]	Illumina [508934]	N
608	chr6_cox_hap2	3085246	3085247	rs28732148	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	6p21.33	AIF1	rs28732148-C	0.932302	2E-9		0.0218984	[0.015-0.029] unit decrease	NR [13737936] (imputed)	N
608	chr6_cox_hap2	3086720	3086721	rs3130060	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	UQCRHP1	rs3130060-T	NR	8E-10		0.0239184	[0.016-0.032] unit decrease	Affymetrix [323858] (imputed)	N
608	chr6_cox_hap2	3086720	3086721	rs3130060	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	UQCRHP1	rs3130060-T	NR	2E-8		0.0217476	[0.014-0.029] unit decrease	Affymetrix [127266] (imputed)	N
608	chr6_cox_hap2	3086720	3086721	rs3130060	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	UQCRHP1	rs3130060-T	NR	6E-9		0.0221795	[0.015-0.03] unit increase	Affymetrix [323123] (imputed)	N
608	chr6_cox_hap2	3086904	3086905	rs2857702	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	UQCRHP1	rs2857702-C	NR	7E-9		0.0219268	[0.015-0.029] unit decrease	Affymetrix [323123] (imputed)	N
608	chr6_cox_hap2	3090124	3090125	rs3993747	31263887	Adams MJ	2019-07-01	Int J Epidemiol	Factors associated with sharing e-mail information and mental health survey participation in large population cohorts.	Mental health study participation (completed survey)	122,647 British ancestry cases, 248,781 British ancestry controls	NA	6p21.33	NR	rs3993747-A	0.65	1E-9		1.0319917	[1.02-1.04]	NR [16367095] (imputed)	N
608	chr6_cox_hap2	3090156	3090157	rs2471960	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Non-Hodgkin's lymphoma	2,400 European ancestry cases, 410,350 European ancestry controls	NA	6p21.33		rs2471960-A	NR	1E-11		1.2300123	NR	Affymetrix [7846216] (imputed)	N
608	chr6_cox_hap2	3090655	3090656	rs542914466	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.33	NR	rs542914466-A	0.009	2E-37	(conditional)	18.321	[17.88-18.77]	Illumina [11270530] (imputed)	N
608	chr6_cox_hap2	3091642	3091643	rs3132451	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	AIF1	rs3132451-C	NR	3E-14		0.0290333	[0.022-0.037] unit decrease	Affymetrix [323858] (imputed)	N
608	chr6_cox_hap2	3091642	3091643	rs3132451	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	AIF1	rs3132451-C	NR	1E-12		0.0272438	[0.02-0.035] unit decrease	Affymetrix [127266] (imputed)	N
608	chr6_cox_hap2	3091642	3091643	rs3132451	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	AIF1	rs3132451-C	NR	3E-15		0.029579	[0.022-0.037] unit increase	Affymetrix [323123] (imputed)	N
608	chr6_cox_hap2	3091642	3091643	rs3132451	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	AIF1	rs3132451-C	0.217	7E-56	(cAMP-specific 3',5'-cyclic phosphodiesterase 4D, PDE4D.5255.22.3)	0.46	[0.4-0.52] unit decrease	Affymetrix [10572788] (imputed)	N
608	chr6_cox_hap2	3091642	3091643	rs3132451	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	AIF1	rs3132451-C	0.217	4E-34	(T-cell surface protein tactile, CD96.9735.44.3)	0.36	[0.3-0.42] unit decrease	Affymetrix [10572788] (imputed)	N
608	chr6_cox_hap2	3091642	3091643	rs3132451	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	AIF1	rs3132451-C	0.217	2E-55	(Glutamate receptor 4, GRIA4.10760.107.3)	0.46	[0.4-0.52] unit decrease	Affymetrix [10572788] (imputed)	N
608	chr6_cox_hap2	3091642	3091643	rs3132451	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	6p21.33	NCR3, AIF1	rs3132451-G	NR	3E-12		0.171592	[0.12-0.22] unit decrease	Illumina [at least 950000] (imputed)	N
608	chr6_cox_hap2	3092772	3092773	rs2844475	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	AIF1	rs2844475-A	NR	2E-8		0.0183217	[0.012-0.025] unit increase	Affymetrix [323858] (imputed)	N
608	chr6_cox_hap2	3092772	3092773	rs2844475	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	AIF1	rs2844475-A	NR	5E-13		0.0229918	[0.017-0.029] unit decrease	Affymetrix [323123] (imputed)	N
608	chr6_cox_hap2	3092929	3092930	rs2736182	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	6p21.33	AIF1	rs2736182-A	0.019095	6E-9		0.0493347	[0.033-0.066] unit increase	Affymetrix [93095623] (imputed)	N
608	chr6_cox_hap2	3092929	3092930	rs2736182	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	6p21.33	AIF1	rs2736182-A	0.019095	2E-13		0.06039303	[0.044-0.077] unit decrease	Affymetrix [93095623] (imputed)	N
608	chr6_cox_hap2	3093458	3093459	rs34451818	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.33		rs34451818-G	NR	1E-9		1.2642225	[1.17-1.36]	Affymetrix [7846216] (imputed)	N
608	chr6_cox_hap2	3095362	3095363	rs144309021	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	6p21.33	PRRC2A	rs144309021-T	0.1234	1E-9	(S1P d16:1)	0.1184	[0.08-0.156] unit decrease	Illumina [~ 47000000] (imputed)	N
608	chr6_cox_hap2	3096079	3096080	rs2857695	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	AIF1	rs2857695-C	NR	2E-15		0.0312768	[0.024-0.039] unit increase	Affymetrix [323123] (imputed)	N
608	chr6_cox_hap2	3096660	3096661	rs140054334	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.33	NR	rs140054334-T	0.017	7E-11		0.45969	[0.32-0.6] unit increase	Affymetrix [up to 8900000] (imputed)	N
608	chr6_cox_hap2	3096660	3096661	rs140054334	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.33	NR	rs140054334-T	0.017	3E-6	(men)	0.387194	[0.23-0.55] unit increase	Affymetrix [up to 8900000] (imputed)	N
608	chr6_cox_hap2	3097176	3097177	rs2736176	32109421	Li C	2020-02-20	Am J Hum Genet	Genome-Wide Association Analysis in Humans Links Nucleotide Metabolism to Leukocyte Telomere Length.	Leukocyte telomere length	78,592 European ancestry individuals	NA	6p21.33	PRRC2A	rs2736176-C	0.31	4E-10		0.035	[0.023-0.047] unit increase	Affymetrix, Illumina, Perlegen [up to 30071938] (imputed)	N
608	chr6_cox_hap2	3097485	3097486	rs2857694	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PRRC2A	rs2857694-T	NR	2E-9		0.0174435	[0.012-0.023] unit increase	Affymetrix [319769] (imputed)	N
608	chr6_cox_hap2	3097485	3097486	rs2857694	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	PRRC2A	rs2857694-T	NR	4E-8		0.0161057	[0.01-0.022] unit increase	Affymetrix [319769] (imputed)	N
608	chr6_cox_hap2	3097636	3097640	rs145554793	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	6p21.33	PRRC2A, SNORA38	rs145554793-C	0.364548	5E-15		0.020902038	[0.016-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
608	chr6_cox_hap2	3098000	3098001	rs2857693	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	PRRC2A	rs2857693-T	NR	2E-11		0.019953	[0.014-0.026] unit increase	Affymetrix [321169] (imputed)	N
608	chr6_cox_hap2	3098000	3098001	rs2857693	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	6p21.33	BAT2	rs2857693-T	0.38	3E-29		0.034	[0.028-0.04] unit decrease	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
608	chr6_cox_hap2	3098877	3098878	rs3115665	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic glomerulonephritis	566 European ancestry cases, 475,255 European ancestry controls, 210 East Asian ancestry cases, 174,345 East Asian ancestry controls	NA	6p21.33		rs3115665-G	NR	3E-8		0.929	[0.6-1.26] unit increase	Affymetrix, Illumina [25844108] (imputed)	N
608	chr6_cox_hap2	3099289	3099290	rs2844472	33563987	Tyrrell J	2021-02-09	Nat Commun	Genetic predictors of participation in optional components of UK Biobank.	Acceptance of an invitation to participate in a mental health questionnaire	146,074 European ancestry cases, 148,713 European ancestry controls	NA	6p21.33	NR	rs2844472-A	0.65	2E-9		1.03	[1.02, 1.04]	Affymetrix [39302896] (imputed)	N
608	chr6_cox_hap2	3099348	3099349	rs2736173	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p21.33	BAT2	rs2736173-A	0.03	2E-7	(EA)	3.58	[2.14-5.98]	Illumina [up to 547389]	N
608	chr6_cox_hap2	3100511	3100512	rs2736172	24132900	Kanazawa T	2013-10-01	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of atypical psychosis.	Psychosis (atypical)	47 Japanese ancestry cases, 882 Japanese ancestry controls	NA	6p21.33	TNF, MICB	rs2736172-?		4E-6				Affymetrix [545513]	N
608	chr6_cox_hap2	3101532	3101533	rs2260051	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		6p21.33	PRRC2A	rs2260051-A	0.438452	2E-17		0.011743	[0.009-0.0144] unit decrease	Affymetrix [12370749]	N
608	chr6_cox_hap2	3101532	3101533	rs2260051	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	Waist circumference	291,107 British ancestry individuals	NA	6p21.33	PRRC2A	rs2260051-A	0.44273999	2E-13		0.230643	[0.17-0.29] unit decrease	Affymetrix [9463307] (imputed)	N
608	chr6_cox_hap2	3101532	3101533	rs2260051	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	6p21.33	NR	rs2260051-A	0.4422	8E-15		0.019329904	[0.014-0.024] unit decrease	Affymetrix [10549349] (imputed)	N
608	chr6_cox_hap2	3101532	3101533	rs2260051	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	6p21.33	PRRC2A	rs2260051-A	0.4425	1E-15		0.002	[0.0014-0.0026] unit increase	Affymetrix [15275733] (imputed)	N
608	chr6_cox_hap2	3101532	3101533	rs2260051	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	223,215 British ancestry individuals	111,610 British ancestry individuals	6p21.33	PRRC2A	rs2260051-T	0.56	7E-12		0.002	[0.0014-0.0026] unit decrease	Affymetrix [15275733] (imputed)	N
608	chr6_cox_hap2	3102434	3102435	rs3135044	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	6p21.33	NR	rs3135044-?		9E-11		0.0145909	[0.01-0.019] unit decrease	Affymetrix [19400418] (imputed)	N
608	chr6_cox_hap2	3105101	3105102	rs2736171	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PRRC2A	rs2736171-G	NR	3E-9		0.0173452	[0.012-0.023] unit decrease	Affymetrix [321016] (imputed)	N
608	chr6_cox_hap2	3105496	3105497	rs1046080	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Sex hormone-binding globulin levels	389,354 European ancestry individuals	NA	6p21.33		rs1046080-A	0.72	4E-8		0.013	nmol/L decrease	NR [NR] (imputed)	N
608	chr6_cox_hap2	3105496	3105497	rs1046080	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	6p21.33		rs1046080-A	0.72	2E-18				NR [NR] (imputed)	N
608	chr6_cox_hap2	3105496	3105497	rs1046080	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	6p21.33		rs1046080-A	0.72	4E-22		0.016	% increase	NR [NR] (imputed)	N
608	chr6_cox_hap2	3105496	3105497	rs1046080	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Aspartate aminotransferase levels	424,778 European ancestry individuals	NA	6p21.33		rs1046080-A	0.72	2E-7		0.011	U/L decrease	NR [NR] (imputed)	N
608	chr6_cox_hap2	3105496	3105497	rs1046080	32534018	Liu X	2020-06-10	Brain Behav Immun	Genetic factors underlying the bidirectional relationship between autoimmune and mental disorders - findings from a Danish population-based study.	Autoimmune traits	1,383 Danish ancestry cases, 62,656 Danish ancestry controls	NA	6p21.33	NR	rs1046080-C	0.26	2E-12		0.72	[0.65-0.79]	NR [7721839] (imputed)	N
608	chr6_cox_hap2	3105496	3105497	rs1046080	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	6p21.33	NR	rs1046080-?	NR	5E-8		0.12785	[0.082-0.174] unit increase	Affymetrix [7794483] (imputed)	N
608	chr6_cox_hap2	3105496	3105497	rs1046080	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	6p21.33	NR	rs1046080-?	NR	3E-6	(male)	0.13448	[0.078-0.191] unit increase	Affymetrix [7794483] (imputed)	N
608	chr6_cox_hap2	3105496	3105497	rs1046080	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite ratios	Up to 5,591 European ancestry individuals	Up to 1,767 European ancestry individuals	6p21.33	PRRC2A	rs1046080-A	0.74	1E-14	(X-11444/X-11470)	0.027	[0.019-0.035] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
608	chr6_cox_hap2	3105752	3105753	rs3132450	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PRRC2A	rs3132450-G	NR	7E-11		0.0268129	[0.019-0.035] unit decrease	Affymetrix [319769] (imputed)	N
608	chr6_cox_hap2	3105752	3105753	rs3132450	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	PRRC2A	rs3132450-G	NR	8E-12		0.0285009	[0.02-0.037] unit decrease	Affymetrix [321169] (imputed)	N
608	chr6_cox_hap2	3107314	3107315	rs3130623	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	6p21.33		rs3130623-T	NR	8E-24		0.0277	[0.022-0.033] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
608	chr6_cox_hap2	3107322	3107323	rs2736163	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein APOM	5,364 Icelandic ancestry individuals	NA	6p21.33		rs2736163-T	0.03403	2E-15		0.413547	[0.31-0.52] unit decrease	Illumina [7506463] (imputed)	N
608	chr6_cox_hap2	3107367	3107368	rs2242660	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cervical cancer	6,563 European ancestry cases, 410,350 European ancestry controls	NA	6p21.33		rs2242660-G	NR	2E-7		1.1015	NR	Affymetrix [7846216] (imputed)	N
608	chr6_cox_hap2	3111458	3111459	rs3115663	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.33	BAT2	rs3115663-G	0.1812	7E-57		3.04	[NR]	Illumina [242824]	N
608	chr6_cox_hap2	3112582	3112583	rs1046089	23894747	Aberg KA	2013-02-01	JAMA Psychiatry	A comprehensive family-based replication study of schizophrenia genes.	Schizophrenia	11,185 European ancestry cases, 10,768 European ancestry controls	1,262 African American ancestry individuals, 2,740 European ancestry individuals, 2,296 Asian ancestry individuals	6p21.33	PRRC2A, BAG6	rs1046089-G	0.34	4E-6	(EA)	1.3	[NR]	NR [1085772] (imputed)	N
608	chr6_cox_hap2	3112582	3112583	rs1046089	23307926	Perry JR	2013-01-09	Hum Mol Genet	A genome-wide association study of early menopause and the combined impact of identified variants.	Menopause (age at onset)	3,493 European ancestry cases, 13,598 European ancestry controls	3,412 European ancestry cases, 4,928 European ancestry controls	6p21.33	NR	rs1046089-A	0.3492	4E-11		0.1919	[0.13-0.25] years increase	NR [NR]	N
608	chr6_cox_hap2	3112582	3112583	rs1046089	22267201	Stolk L	2012-01-22	Nat Genet	Meta-analyses identify 13 loci associated with age at menopause and highlight DNA repair and immune pathways.	Menopause (age at onset)	38,968 European ancestry female individuals	Up to 14,435 European ancestry female individuals	6p21.33	PRRC2A	rs1046089-A	0.353	2E-16		0.213	[0.16-0.26] years decrease	Affymetrix, Illumina [2551160] (imputed)	N
608	chr6_cox_hap2	3113206	3113207	rs2261033	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PRRC2A	rs2261033-G	NR	3E-12		0.0196963	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
608	chr6_cox_hap2	3113206	3113207	rs2261033	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	PRRC2A	rs2261033-G	NR	2E-12		0.0222106	[0.016-0.028] unit increase	Affymetrix [323858] (imputed)	N
608	chr6_cox_hap2	3113206	3113207	rs2261033	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	PRRC2A	rs2261033-G	NR	5E-11		0.0185935	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
608	chr6_cox_hap2	3113206	3113207	rs2261033	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	PRRC2A	rs2261033-G	NR	2E-10		0.0200207	[0.014-0.026] unit increase	Affymetrix [127266] (imputed)	N
608	chr6_cox_hap2	3113206	3113207	rs2261033	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PRRC2A	rs2261033-G	NR	2E-11		0.0189094	[0.013-0.024] unit decrease	Affymetrix [321016] (imputed)	N
608	chr6_cox_hap2	3113206	3113207	rs2261033	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	PRRC2A	rs2261033-G	NR	3E-24		0.0314057	[0.025-0.037] unit decrease	Affymetrix [323123] (imputed)	N
608	chr6_cox_hap2	3113206	3113207	rs2261033	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	PRRC2A	rs2261033-G	NR	2E-12		0.0202126	[0.015-0.026] unit increase	Affymetrix [321169] (imputed)	N
608	chr6_cox_hap2	3113206	3113207	rs2261033	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.33	PRRC2A	rs2261033-A	0.5235	9E-11		0.0461	[0.032-0.06] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
608	chr6_cox_hap2	3113970	3113971	rs35502919	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	PRRC2A	rs35502919-A	NR	5E-11		0.0387702	[0.027-0.05] unit increase	Affymetrix [321169] (imputed)	N
608	chr6_cox_hap2	3113970	3113971	rs35502919	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	6p21.33	NR	rs35502919-?		9E-14	(AGER)	0.631	[NR] unit decrease	Illumina [NR]	N
608	chr6_cox_hap2	3114206	3114207	rs10885	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p21.33	PRRC2A	rs10885-T		2E-36		0.035	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
608	chr6_cox_hap2	3114509	3114510	rs34137317	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first birth	542,901 European ancestry individuals	NA	6p21.33	PRRC2A	rs34137317-T	0.0277	6E-10		0.2473	[0.17-0.33] unit increase	NR [9744772] (imputed)	N
608	chr6_cox_hap2	3114814	3114815	rs2736155	34741163	Eijsbouts C	2021-11-05	Nat Genet	Genome-wide analysis of 53,400 people with irritable bowel syndrome highlights shared genetic pathways with mood and anxiety disorders.	Irritable bowel syndrome	53,400 European ancestry cases, 433,201 European ancestry controls	205,252 European ancestry cases, 1,384,055 European ancestry controls	6p21.33	NR	rs2736155-C	0.4758	3E-12		0.022300169	[0.016-0.029] unit increase	Illumina [9885498] (imputed)	N
608	chr6_cox_hap2	3114814	3114815	rs2736155	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	PRRC2A	rs2736155-C	NR	6E-10		0.0194264	[0.013-0.026] unit increase	Affymetrix [323858] (imputed)	N
608	chr6_cox_hap2	3114814	3114815	rs2736155	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	PRRC2A	rs2736155-C	NR	8E-9		0.0180894	[0.012-0.024] unit increase	Affymetrix [127266] (imputed)	N
608	chr6_cox_hap2	3114814	3114815	rs2736155	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Anxiety	at least 23,606 European ancestry cases, at least 113,351 European ancestry controls	624,615 European ancestry cases, 1,310,854 European ancestry controls	6p21.33	PRRC2A	rs2736155-G	0.4811	5E-18		0.019583363	[0.015-0.025] unit decrease	NR [9417325] (imputed)	N
608	chr6_cox_hap2	3114814	3114815	rs2736155	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p21.33	NR	rs2736155-C	0.478	6E-7		0.0059	[0.0035-0.0083] unit increase	NR [7666894] (imputed)	N
608	chr6_cox_hap2	3115063	3115064	rs7889	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	6p21.33	BAG6	rs7889-C	0.3609	3E-8		0.012577614	[0.0082-0.017] unit increase	Affymetrix [11514654] (imputed)	N
608	chr6_cox_hap2	3115063	3115064	rs7889	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	6p21.33	PRRC2A	rs7889-C	0.3904	4E-14		0.2499	[0.19-0.31] mmHg decrease	Affymetrix [NR] (imputed)	N
608	chr6_cox_hap2	3115990	3115991	rs2077491	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	BAG6	rs2077491-C	NR	8E-13		0.0219509	[0.016-0.028] unit decrease	Affymetrix [323123] (imputed)	N
608	chr6_cox_hap2	3115990	3115991	rs2077491	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	BAG6	rs2077491-C	NR	2E-15		0.0226711	[0.017-0.028] unit increase	Affymetrix [321169] (imputed)	N
608	chr6_cox_hap2	3115990	3115991	rs2077491	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA	6p21.33	NR	rs2077491-?	NR	5E-6		0.0322	[0.018-0.046] unit decrease	Illumina [at least 560000] (imputed)	N
608	chr6_cox_hap2	3116281	3116285	rs757744062	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.33	BAG6	rs757744062-CAAAA	0.8204	4E-8		0.0522	[0.034-0.071] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
608	chr6_cox_hap2	3116366	3116367	rs2178899	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	6p21.33	NA	rs2178899-A	0.8833	5E-23		0.0243	[0.019-0.029] unit increase	NR [~ 27400000] (imputed)	N
608	chr6_cox_hap2	3116664	3116665	rs750332	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls	NA	6p21.33	BAG6	rs750332-C	0.180658	4E-14		0.055028614	[0.041-0.069] unit decrease	Affymetrix [7288503] (imputed)	N
608	chr6_cox_hap2	3120144	3120145	rs1077393	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	6p21.33	HLA-C	rs1077393-A	0.477302	2E-8		5.65	z score decrease	NR [10847151] (imputed)	N
608	chr6_cox_hap2	3120144	3120145	rs1077393	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling worry	372,869 European ancestry individuals	NA	6p21.33	HLA-C	rs1077393-A	0.477302	4E-10		6.267	unit decrease	NR [10847151] (imputed)	N
608	chr6_cox_hap2	3121114	3121114	rs751715213	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	BAG6	rs751715213-CAAAAAAAAAA	NR	7E-9		0.0198369	[0.013-0.027] unit decrease	Affymetrix [319769] (imputed)	N
608	chr6_cox_hap2	3121114	3121114	rs751715213	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	BAG6	rs751715213-CAAAAAAAAAA	NR	3E-14		0.0288432	[0.021-0.036] unit decrease	Affymetrix [323858] (imputed)	N
608	chr6_cox_hap2	3121114	3121114	rs751715213	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	BAG6	rs751715213-CAAAAAAAAAA	NR	4E-8		0.0187898	[0.012-0.025] unit decrease	Affymetrix [319769] (imputed)	N
608	chr6_cox_hap2	3121114	3121114	rs751715213	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	BAG6	rs751715213-CAAAAAAAAAA	NR	4E-13		0.0275826	[0.02-0.035] unit decrease	Affymetrix [127266] (imputed)	N
608	chr6_cox_hap2	3121114	3121114	rs751715213	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	BAG6	rs751715213-CAAAAAAAAAA	NR	3E-8		0.0190286	[0.012-0.026] unit increase	Affymetrix [321016] (imputed)	N
608	chr6_cox_hap2	3121114	3121114	rs751715213	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	BAG6	rs751715213-CAAAAAAAAAA	NR	3E-10		0.0235731	[0.016-0.031] unit increase	Affymetrix [323123] (imputed)	N
608	chr6_cox_hap2	3121114	3121114	rs751715213	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	BAG6	rs751715213-CAAAAAAAAAA	NR	3E-10		0.0218162	[0.015-0.029] unit decrease	Affymetrix [321169] (imputed)	N
608	chr6_cox_hap2	3121114	3121114	rs751715213	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p21.33	BAG6	rs751715213-CAAAAAAAAAA	NR	4E-9		0.0222292	[0.015-0.03] unit decrease	Affymetrix [323858] (imputed)	N
608	chr6_cox_hap2	3123356	3123357	rs3130048	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6p21.33	NR	rs3130048-?	NR	1E-11				Affymetrix [~ 8270000] (imputed)	N
608	chr6_cox_hap2	3123356	3123357	rs3130048	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	6p21.33	NA	rs3130048-T	0.7315	2E-20		0.0169	[0.013-0.02] unit decrease	NR [~ 27400000] (imputed)	N
608	chr6_cox_hap2	3125984	3125985	rs805303	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Systolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	6p21.33	BAT2, BAT5	rs805303-A	0.382	6E-6	(EA, initial)	0.368	[0.21-0.53] unit decrease	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
608	chr6_cox_hap2	3125984	3125985	rs805303	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Diastolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	6p21.33	BAT2, BAT5	rs805303-A	0.382	4E-6	(EA, initial)	0.23	[0.13-0.33] unit decrease	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
608	chr6_cox_hap2	3125984	3125985	rs805303	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Systolic blood pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	6p21.33	BAT2, BAT5	rs805303-A	0.3958	3E-6	(EA)	0.0174	unit decrease	Illumina [242296]	N
608	chr6_cox_hap2	3125984	3125985	rs805303	21909115	Ehret GB	2011-09-11	Nature	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Systolic blood pressure	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	6p21.33	BAT2, BAT5	rs805303-G	0.61	2E-11		0.376	[NR] mmHg increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
608	chr6_cox_hap2	3125984	3125985	rs805303	21909115	Ehret GB	2011-09-11	Nature	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Hypertension	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	6p21.33	BAT2, BAT5	rs805303-G	0.61	1E-10		0.054	[NR] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
608	chr6_cox_hap2	3125984	3125985	rs805303	21909115	Ehret GB	2011-09-11	Nature	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Diastolic blood pressure	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	6p21.33	BAT2, BAT5	rs805303-G	0.61	3E-11		0.228	[NR] mmHg increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
608	chr6_cox_hap2	3129752	3129753	rs2736201	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6p21.33	BAG6	rs2736201-C	0.156392	7E-12		0.036189657	[0.026-0.047] unit increase	Affymetrix [93095623] (imputed)	N
608	chr6_cox_hap2	3129752	3129753	rs2736201	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	6p21.33	BAG6	rs2736201-C	0.156492	3E-71		0.06142095	[0.055-0.068] unit increase	Affymetrix [93095623] (imputed)	N
608	chr6_cox_hap2	3130137	3130138	rs3117582	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Squamous cell lung carcinoma	8,350 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	6p21.33	NR	rs3117582-G	NR	2E-9		0.77	[0.71-0.84]	NR [NR] (imputed)	N
608	chr6_cox_hap2	3130137	3130138	rs3117582	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Non-small cell lung cancer	27,120 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	6p21.33	NR	rs3117582-G	NR	2E-6		0.87	[0.82-0.92]	NR [NR] (imputed)	N
608	chr6_cox_hap2	3130137	3130138	rs3117582	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p21.33	BAT3, APOM	rs3117582-C	0.34	1E-30				Illumina [118177]	N
608	chr6_cox_hap2	3130137	3130138	rs3117582	19836008	Landi MT	2009-10-15	Am J Hum Genet	A genome-wide association study of lung cancer identifies a region of chromosome 5p15 associated with risk for adenocarcinoma.	Lung adenocarcinoma	5,739 European ancestry cases, 5,848 European ancestry controls	7,561 European ancestry cases, 13,818 European ancestry controls	6p21.33	APOM, BAT3	rs3117582-C	0.10	5E-12		1.22	[1.15-1.29]	Illumina [515922]	N
608	chr6_cox_hap2	3130137	3130138	rs3117582	19654303	Broderick P	2009-08-04	Cancer Res	Deciphering the impact of common genetic variation on lung cancer risk: a genome-wide association study.	Lung cancer	1,952 European ancestry cases, 1,438 European ancestry controls	2,465 European ancestry cases, 3,005 European ancestry controls, 3,143 individuals, 3,762 individuals	6p21.33	BAT3	rs3117582-?	NR	4E-10		1.24	[1.16-1.33]	Illumina [511919]	N
608	chr6_cox_hap2	3130137	3130138	rs3117582	18978787	Wang Y	2008-11-02	Nat Genet	Common 5p15.33 and 6p21.33 variants influence lung cancer risk.	Lung cancer	5,095 European ancestry cases, 5,200 European ancestry controls	2,448 European ancestry cases, 2,983 European ancestry controls	6p21.33	BAT3, MSH5	rs3117582-C	NR	5E-10		1.24	[1.16-1.33]	Illumina [223891]	N
608	chr6_cox_hap2	3131660	3131661	rs1266078	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	APOM	rs1266078-G	0.032	3E-12	(Apolipoprotein M, APOM.10445.20.3)	0.49	[0.35-0.63] unit decrease	Affymetrix [10572788] (imputed)	N
608	chr6_cox_hap2	3132223	3132224	rs805297	21844665	Hu HJ	2011-08-16	Exp Mol Med	Common variants at the promoter region of the APOM confer a risk of rheumatoid arthritis.	Rheumatoid arthritis	100 Korean ancestry cases, 600 Korean ancestry controls	578 Korean ancestry cases, 711 Korean ancestry controls	6p21.33	APOM	rs805297-A	0.36	3E-10		1.56	[1.36-1.80]	Affymetrix [300909]	N
608	chr6_cox_hap2	3134082	3134083	rs113947529	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ISG15	5,349 Icelandic ancestry individuals	NA	6p21.33		rs113947529-T	0.01503	5E-16		0.622819	[0.47-0.77] unit decrease	Illumina [7506463] (imputed)	N
608	chr6_cox_hap2	3137731	3137732	rs805263	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p21.33	C6orf47	rs805263-C	0.026972	3E-12		0.049836818	[0.036-0.064] unit increase	Affymetrix [93095623] (imputed)	N
608	chr6_cox_hap2	3138015	3138016	rs148844907	33608531	Wu Y	2021-02-19	Nat Commun	GWAS of peptic ulcer disease implicates Helicobacter pylori infection, other gastrointestinal disorders and depression.	Inflammatory bowel disease	7,045 European ancestry cases, 449,282 European ancestry controls	NA	6p21.33	NR	rs148844907-T	0.99	1E-40		0.47	[NR]	NR [8546065] (imputed)	N
608	chr6_cox_hap2	3138015	3138016	rs148844907	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p21.33	C6orf47	rs148844907-A	0.01	2E-12		1.92	[1.74-2.12]	Illumina [at least 560000] (imputed)	N
608	chr6_cox_hap2	3138351	3138352	rs805262	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (mother's age at death or mother's attained age)	up to 699,000 individuals	NA	6p21.33	NR	rs805262-G		7E-7				Illumina [458525]	N
608	chr6_cox_hap2	3140450	3140451	rs805260	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	GPANK1	rs805260-G	NR	8E-13		0.0307796	[0.022-0.039] unit decrease	Affymetrix [323123] (imputed)	N
608	chr6_cox_hap2	3140953	3140954	rs76072474	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	6p21.33	NR	rs76072474-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
608	chr6_cox_hap2	3140953	3140954	rs76072474	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	6p21.33	NR	rs76072474-?	NR	1E-11				Affymetrix [~ 8270000] (imputed)	N
608	chr6_cox_hap2	3141753	3141754	rs3130618	25344690	Feenstra B	2014-10-26	Nat Genet	Common variants associated with general and MMR vaccine-related febrile seizures.	Febrile seizures (MMR vaccine-related)	929 European ancestry cases, 4,118 European ancestry controls	Up to 408 European ancestry cases, Up to 1,645 European ancestry controls	6p21.33	GPANK1	rs3130618-C	0.79	2E-7		1.34	[1.20-1.49]	Illumina [8129524] (imputed)	N
608	chr6_cox_hap2	3141753	3141754	rs3130618	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.33	BAT4	rs3130618-A	0.1811	2E-56		3.03	[NR]	Illumina [242824]	N
608	chr6_cox_hap2	3145562	3145563	rs115820082	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	CSNK2B, CSNK2B-LY6G5B-1181	rs115820082-G	NR	4E-12		0.0902636	[0.065-0.116] unit decrease	Affymetrix [321016] (imputed)	N
608	chr6_cox_hap2	3145650	3145651	rs3117578	31375628	Tengvall K	2019-08-02	Proc Natl Acad Sci U S A	Molecular mimicry between Anoctamin 2 and Epstein-Barr virus nuclear antigen 1 associates with multiple sclerosis risk.	Anti-anoctamin 2 antibody levels	11,936 European ancestry individuals	NA	6p21.33	NR	rs3117578-A	NR	2E-7		0.063	[0.034-0.092] unit increase	Illumina [615763]	N
609	chr6_cox_hap2	3146361	3146362	rs9267531	26316170	Demirci FY	2015-08-28	Arthritis Rheumatol	Identification of a New Susceptibility Locus for Systemic Lupus Erythematosus on Chromosome 12 in Individuals of European Ancestry.	Systemic lupus erythematosus	661 European ancestry cases, 487 European ancestry controls	4,467 European ancestry cases, 9,114 European ancestry controls	6p21.33	CSNK2B	rs9267531-?	NR	8E-8				Affymetrix [up to 700598]	N
609	chr6_cox_hap2	3146361	3146362	rs9267531	25827949	Kunz M	2015-05-04	Exp Dermatol	Genome-wide association study identifies new susceptibility loci for cutaneous lupus erythematosus.	Cutaneous lupus erythematosus	151 European ancestry cases, 1,288 European ancestry controls	219 European ancestry cases, 262 European ancestry controls	6p21.33	CSNK2B, MSH5, MICA, MICB	rs9267531-G	0.1	3E-14		2.62	[1.93-3.54]	Affymetrix [906600]	N
609	chr6_cox_hap2	3147797	3147798	rs805268	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p21.33		rs805268-A	0.969	9E-19				Affymetrix [10369434] (imputed)	N
609	chr6_cox_hap2	3160812	3160813	rs9267536	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6p21.33	BAT5	rs9267536-?	NR	6E-6	(TAG 52:6)	0.34227857	[0.19-0.49] unit increase	Affymetrix [at least 2500000] (imputed)	N
609	chr6_cox_hap2	3175069	3175070	rs805273	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	ABHD16A, XXbac-BPG32J3.20, MIR4646	rs805273-A	0.06820461	5E-16	(Complement C4)	0.699	[0.53-0.87] unit increase	Affymetrix [509946]	N
609	chr6_cox_hap2	3179113	3179114	rs1266071	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	6p21.33	ABHD16A, XXbac-BPG32J3.20	rs1266071-T	0.107214	4E-14		0.027769113	[0.021-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
609	chr6_cox_hap2	3181885	3181886	rs34406901	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	6p21.33	XXbac-BPG32J3.20	rs34406901-G	0.0566	7E-15		0.039119102	[0.029-0.049] unit increase	Affymetrix [93095623] (imputed)	N
609	chr6_cox_hap2	3183053	3183054	rs9267546	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LIPA	5,367 Icelandic ancestry individuals	NA	6p21.33		rs9267546-A	0.08009	2E-15		0.274526	[0.21-0.34] unit increase	Illumina [7506463] (imputed)	N
609	chr6_cox_hap2	3185383	3185384	rs2242653	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	6p21.33	NR	rs2242653-?	NR	3E-10	(MIC-A)	0.545677	[0.38-0.71] unit decrease	Illumina [11901634] (imputed)	N
609	chr6_cox_hap2	3185603	3185604	rs9267548	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p21.33	NR	rs9267548-?	NR	5E-9		0.1189	[0.079-0.159] unit decrease	Illumina [at least 560000] (imputed)	N
609	chr6_cox_hap2	3189083	3189084	rs805285	33941608	Khan A	2021-05-03	J Am Soc Nephrol	Medical Records-Based Genetic Studies of the Complement System.	Complement C4 levels	3,247 European ancestry individuals, 600 African ancestry individuals, 151 East Asian ancestry individuals	NA	6p21.33	C4	rs805285-C	0.32	1E-14		0.19	[0.15-0.22] unit increase	NR [NR] (imputed)	N
609	chr6_cox_hap2	3189083	3189084	rs805285	33941608	Khan A	2021-05-03	J Am Soc Nephrol	Medical Records-Based Genetic Studies of the Complement System.	Complement C4 levels	3,247 European ancestry individuals, 600 African ancestry individuals, 151 East Asian ancestry individuals	NA	6p21.33	C4	rs805285-C	0.25	2E-10	(EA)	0.18	[0.14-0.22] unit increase	NR [NR] (imputed)	N
609	chr6_cox_hap2	3196113	3196114	rs15574	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking initiation (ever regular vs never regular)	up to 433,216 European ancestry individuals	NA	6p21.33	LY6G6C	rs15574-A	0.194	7E-9		0.0159	[0.011-0.021] unit increase	Illumina [~ 250000] (imputed)	N
609	chr6_cox_hap2	3197833	3197834	rs805294	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.33		rs805294-A	0.644	4E-13				Affymetrix [10369434] (imputed)	N
609	chr6_cox_hap2	3198134	3198135	rs805293	31879980	German CA	2019-12-26	Genet Epidemiol	Ordered multinomial regression for genetic association analysis of ordinal phenotypes at Biobank scale.	Hypertension	30,822 British ancestry normal blood pressure individuals, 25,242 British ancestry elevated blood pressure individuals, 50,461 British ancestry stage 1 hypertension individuals, 75,286 British ancestry stage 2 hypertension individuals, 3,754 British ancestry hypertension crisis individuals	NA	6p21.33	MPIG6B	rs805293-?	NR	3E-12		0.0433015	NR unit decrease	Affymetrix [464137]	N
609	chr6_cox_hap2	3198134	3198135	rs805293	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	6p21.33	NR	rs805293-A	0.46	8E-9		0.00643097	[0.0042-0.0086] unit decrease	NR [9732723] (imputed)	N
609	chr6_cox_hap2	3201273	3201274	rs453098	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SEMA6C	5,362 Icelandic ancestry individuals	NA	6p21.33		rs453098-A	0.07505	1E-13		0.264219	[0.19-0.33] unit increase	Illumina [7506463] (imputed)	N
609	chr6_cox_hap2	3201273	3201274	rs453098	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PCDHGA11	5,360 Icelandic ancestry individuals	NA	6p21.33		rs453098-A	0.07505	4E-12		0.237269	[0.17-0.3] unit increase	Illumina [7506463] (imputed)	N
609	chr6_cox_hap2	3201273	3201274	rs453098	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HSPA1A	5,360 Icelandic ancestry individuals	NA	6p21.33		rs453098-A	0.07505	8E-15		0.272702	[0.2-0.34] unit increase	Illumina [7506463] (imputed)	N
609	chr6_cox_hap2	3202002	3202003	rs11575845	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C6orf25	5,363 Icelandic ancestry individuals	NA	6p21.33		rs11575845-G	0.03386	7E-46		0.736966	[0.64-0.84] unit decrease	Illumina [7506463] (imputed)	N
609	chr6_cox_hap2	3202002	3202003	rs11575845	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6p21.33		rs11575845-?	NR	4E-7		0.890554	[0.85-0.94]	NR [685523]	N
609	chr6_cox_hap2	3202002	3202003	rs11575845	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	6p21.33	C6orf25	rs11575845-G	0.06333	6E-27		0.05543542	[0.045-0.066] unit increase	Affymetrix [93095623] (imputed)	N
609	chr6_cox_hap2	3207003	3207004	rs805305	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C6orf25	5,363 Icelandic ancestry individuals	NA	6p21.33		rs805305-G	0.32	4E-22		0.196057	[0.16-0.24] unit increase	Illumina [7506463] (imputed)	N
609	chr6_cox_hap2	3207174	3207175	rs707916	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling nervous	373,121 European ancestry individuals	NA	6p21.33	CCHCR1	rs707916-A	0.365563	2E-13		7.35	z score decrease	NR [10847151] (imputed)	N
609	chr6_cox_hap2	3214031	3214032	rs115204832	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ISG15	5,349 Icelandic ancestry individuals	NA	6p21.33		rs115204832-G	0.01432	1E-183		2.1193	[1.98-2.26] unit decrease	Illumina [7506463] (imputed)	N
609	chr6_cox_hap2	3214031	3214032	rs115204832	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C2	5,363 Icelandic ancestry individuals	NA	6p21.33		rs115204832-G	0.01432	1E-282		2.53186	[2.39-2.67] unit decrease	Illumina [7506463] (imputed)	N
609	chr6_cox_hap2	3214746	3214747	rs145269503	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	6p21.33	CLIC1	rs145269503-A	0.0221	3E-36		0.1547004	[0.13-0.18] unit decrease	Affymetrix [~ 2500000] (imputed)	N
609	chr6_cox_hap2	3216467	3216468	rs2736154	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		6p21.33	CLIC1	rs2736154-A	0.790274	4E-8		0.0109563	[0.007-0.0149] unit increase	Affymetrix [12370749]	N
609	chr6_cox_hap2	3216472	3216473	rs396369	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	6p21.33		rs396369-T	NR	2E-15		0.0202	[0.015-0.025] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
609	chr6_cox_hap2	3217134	3217135	rs28381344	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	6p21.33	NR	rs28381344-A	0.0438845616860758	1E-8		0.020618176	[0.014-0.028] unit increase	NR [NR]	N
609	chr6_cox_hap2	3217134	3217135	rs28381344	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	6p21.33	NR	rs28381344-A	0.0438845616860758	1E-8		0.013281214	[0.0087-0.0179] unit increase	NR [NR]	N
609	chr6_cox_hap2	3217134	3217135	rs28381344	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Strep throat	52,487 European ancestry cases, 22,017 European ancestry controls	NA	6p21.33	NR	rs28381344-?	NR	1E-6		0.0694	[0.041-0.098] unit decrease	Illumina [at least 560000] (imputed)	N
609	chr6_cox_hap2	3217338	3217339	rs3131382	32752121	Nedoszytko B	2020-07-31	Int J Mol Sci	Results from a Genome-Wide Association Study (GWAS) in Mastocytosis Reveal New Gene Polymorphisms Associated with WHO Subgroups.	Systemic mastocytosis	93 European ancestry cases, 5,606 European ancestry controls	NA	6p21.33	MSH5	rs3131382-A	0.03194	9E-7		3.247	[2.75-3.74]	Illumina [281811]	N
609	chr6_cox_hap2	3217338	3217339	rs3131382	32752121	Nedoszytko B	2020-07-31	Int J Mol Sci	Results from a Genome-Wide Association Study (GWAS) in Mastocytosis Reveal New Gene Polymorphisms Associated with WHO Subgroups.	Mastocytosis	234 European ancestry cases, 5,606 European ancestry controls	NA	6p21.33	MSH5	rs3131382-A	0.03194	3E-8		2.602	[2.25-2.95]	Illumina [281811]	N
609	chr6_cox_hap2	3217755	3217756	rs409558	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	CLIC1, MSH5-SAPCD1, MSH5, SAPCD1-AS1, RNU6-850P, SAPCD1, VARS, VWA7	rs409558-C	0.1591365	1E-10	(EA, Complement C4)	0.3861	[0.27-0.5] unit increase	Affymetrix [509946]	N
609	chr6_cox_hap2	3217755	3217756	rs409558	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Systolic blood pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	154,543 European ancestry individuals, 26,183 South Asian ancestry individuals	6p21.33	MSH5, SAPCD1	rs409558-G	0.176	6E-8		0.33	[0.21-0.45] unit decrease	Illumina [247039]	N
609	chr6_cox_hap2	3217755	3217756	rs409558	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Pulse pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	154,543 European ancestry individuals, 26,183 South Asian ancestry individuals	6p21.33	MSH5, SAPCD1	rs409558-G	0.176	3E-9		0.26	[0.18-0.34] unit decrease	Illumina [247039]	N
609	chr6_cox_hap2	3218518	3218519	rs28381348	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p21.33	MSH5	rs28381348-C	0.04	5E-6	(EA)	2.81	[1.77-4.47]	Illumina [up to 547389]	N
609	chr6_cox_hap2	3218943	3218944	rs1144709	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	6p21.33	Intergenic	rs1144709-T	0.2281	3E-10	(MTAG)	0.0134	[0.0093-0.0175] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
609	chr6_cox_hap2	3218943	3218944	rs1144709	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	6p21.33	Intergenic	rs1144709-C	0.7719	6E-9		0.0135	[0.009-0.018] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
609	chr6_cox_hap2	3218943	3218944	rs1144709	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	6p21.33	Intergenic	rs1144709-C	0.7725	3E-10		0.017	[0.012-0.022] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
609	chr6_cox_hap2	3219697	3219698	rs28381350	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	6p21.33	PRRC2A	rs28381350-A	0.1297	5E-9	(S1P d16:1)	0.1104	[0.073-0.147] unit decrease	Illumina [~ 47000000] (imputed)	N
609	chr6_cox_hap2	3223044	3223045	rs3828922	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	CLIC1, MSH5-SAPCD1, MSH5, SAPCD1-AS1, RNU6-850P, SAPCD1, VARS, VWA7	rs3828922-T	0.1584754	2E-19	(EA, MHC class I polypeptide-related sequence A)	0.5315	[0.42-0.64] unit decrease	Affymetrix [509946]	N
609	chr6_cox_hap2	3227281	3227282	rs3117572	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MSH5, MSH5-SAPCD1	rs3117572-A	NR	2E-9		0.023199	[0.016-0.031] unit increase	Affymetrix [323123] (imputed)	N
609	chr6_cox_hap2	3227281	3227282	rs3117572	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	MSH5, MSH5-SAPCD1	rs3117572-A	NR	7E-10		0.0221723	[0.015-0.029] unit decrease	Affymetrix [321169] (imputed)	N
609	chr6_cox_hap2	3230626	3230627	rs3131379	26316170	Demirci FY	2015-08-28	Arthritis Rheumatol	Identification of a New Susceptibility Locus for Systemic Lupus Erythematosus on Chromosome 12 in Individuals of European Ancestry.	Systemic lupus erythematosus	661 European ancestry cases, 487 European ancestry controls	4,467 European ancestry cases, 9,114 European ancestry controls	6p21.33	MSH5	rs3131379-?	NR	8E-8				Affymetrix [up to 700598]	N
609	chr6_cox_hap2	3230626	3230627	rs3131379	18204446	Harley JB	2008-01-20	Nat Genet	Genome-wide association scan in women with systemic lupus erythematosus identifies susceptibility variants in ITGAM, PXK, KIAA1542 and other loci.	Systemic lupus erythematosus	720 European ancestry female cases, 2,337 European ancestry female controls	1,846 European ancestry female cases, 1,825 European ancestry female controls	6p21.33	HLA region	rs3131379-A	0.1	2E-52		2.36	[2.11-2.64]	Illumina [317501]	N
609	chr6_cox_hap2	3232373	3232374	rs3130486	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (anilides)	83,218 European ancestry cases, 96,592 European ancestry controls	NA	6p21.33	MSH5	rs3130486-T	0.265164	1E-13		0.05492751	[0.04-0.069] unit decrease	Affymetrix [7288503] (imputed)	N
609	chr6_cox_hap2	3234870	3234871	rs3131378	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	6p21.33	MSH5-SAPCD1	rs3131378-G	0.098896646	3E-18		1.1810031	[1.137601617-1.226060343]	Illumina [10439017] (imputed)	N
609	chr6_cox_hap2	3236273	3236274	rs707939	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MSH5, MSH5-SAPCD1	rs707939-A	NR	4E-10		0.0204551	[0.014-0.027] unit decrease	Affymetrix [323123] (imputed)	N
609	chr6_cox_hap2	3236273	3236274	rs707939	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.33	ABHD16A, AIF1, APOM, BAG6, C2, C2-AS1, C4A, C4B, C4B_2, C6orf25, C6orf47, C6orf48, CFB, CLIC1, CSNK2B, CYP21A1P, CYP21A2, DDAH2, DXO, EHMT2, GPANK1, HSPA1A, HSPA1B, HSPA1L, LSM2, LY6G5B, LY6G5C, LY6G6C, LY6G6D, LY6G6E, LY6G6F, MIR1236, MIR4646, MIR6832, MSH5, MSH5-SAPCD1, NELFE, NEU1, PRRC2A, SAPCD1, SAPCD1-AS1, SKIV2L, SLC44A4, SNORA38, SNORD48, SNORD52, STK19, TNXA, TNXB, VARS, VWA7, ZBTB12	rs707939-A		4E-12		1.07	[1.05-1.09]	Affymetrix, Illumina [NR]	N
609	chr6_cox_hap2	3236435	3236436	rs17207524	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	6p21.33	MSH5	rs17207524-T	0.06447	3E-8		1.09	NR	Affymetrix [9154080] (imputed)	N
609	chr6_cox_hap2	3236435	3236436	rs17207524	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs17207524-G	0.96171875	3E-9	(TGM3, 4471_50_2)	0.3747752	[0.25-0.5] unit increase	Illumina [> 1000000] (imputed)	N
609	chr6_cox_hap2	3236435	3236436	rs17207524	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs17207524-G	0.96171875	1E-31	(G6B, 7065_1_4)	0.7349115	[0.61-0.86] unit increase	Illumina [> 1000000] (imputed)	N
609	chr6_cox_hap2	3236435	3236436	rs17207524	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs17207524-G	0.96171875	1E-14	(C4A C4B, 4481_34_2)	0.5052215	[0.38-0.63] unit decrease	Illumina [> 1000000] (imputed)	N
609	chr6_cox_hap2	3237482	3237483	rs3115672	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Squamous cell lung carcinoma	8,350 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	6p21.33	NR	rs3115672-T	NR	2E-8		1.28	[1.17-1.39]	NR [NR] (imputed)	N
609	chr6_cox_hap2	3237482	3237483	rs3115672	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Non-small cell lung cancer	27,120 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	6p21.33	NR	rs3115672-T	NR	4E-6		1.15	[1.08-1.22]	NR [NR] (imputed)	N
609	chr6_cox_hap2	3237482	3237483	rs3115672	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	6p21.33	NR	rs3115672-T	0.113634053654599	4E-15		0.014519162	[0.011-0.018] unit decrease	NR [NR]	N
609	chr6_cox_hap2	3237482	3237483	rs3115672	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	6p21.33	NR	rs3115672-T	0.113634053654599	6E-15		0.018733539	[0.014-0.023] unit decrease	NR [NR]	N
609	chr6_cox_hap2	3237482	3237483	rs3115672	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	6p21.33	NR	rs3115672-T	0.113634053654599	5E-14		0.015431175	[0.011-0.019] unit decrease	NR [NR]	N
609	chr6_cox_hap2	3237482	3237483	rs3115672	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	6p21.33	NR	rs3115672-T	0.113634053654599	2E-15		0.0121121025	[0.0091-0.0151] unit decrease	NR [NR]	N
609	chr6_cox_hap2	3237574	3237575	rs61748589	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C4A;C4B	5,362 Icelandic ancestry individuals	NA	6p21.33		rs61748589-G	0.01635	1E-9		0.440324	[0.3-0.58] unit decrease	Illumina [7506463] (imputed)	N
609	chr6_cox_hap2	3237852	3237853	rs2075801	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	CLIC1, MSH5-SAPCD1, MSH5, SAPCD1-AS1, RNU6-850P, SAPCD1, VARS, VWA7	rs2075801-A	0.1582915	8E-15	(EA, gp41 C34 peptide, HIV)	0.4506	[0.34-0.56] unit increase	Affymetrix [509946]	N
609	chr6_cox_hap2	3238944	3238945	rs707938	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	6p21.33	NR	rs707938-A	0.319085	5E-9		0.039337814	[0.026-0.053] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
609	chr6_cox_hap2	3238944	3238945	rs707938	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	6p21.33	Intergenic	rs707938-A	0.6802	4E-9		0.018	[0.012-0.024] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
609	chr6_cox_hap2	3238944	3238945	rs707938	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p21.33	NR	rs707938-?	NR	9E-7		4.905	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
609	chr6_cox_hap2	3238944	3238945	rs707938	29773799	Horikoshi M	2018-05-17	Nat Commun	Elucidating the genetic architecture of reproductive ageing in the Japanese population.	Menarche (age at onset)	67,029 Japanese ancestry women	73,397 European ancestry women	6p21.33	NR	rs707938-A	0.5873	1E-12	(japanese)	0.189	[0.14-0.24] year increase	Illumina [at least 532488] (imputed)	N
609	chr6_cox_hap2	3238944	3238945	rs707938	26414677	Day FR	2015-11-01	Nat Genet	Large-scale genomic analyses link reproductive aging to hypothalamic signaling, breast cancer susceptibility and BRCA1-mediated DNA repair.	Menopause (age at onset)	up to 69,626 European ancestry women	NA	6p21.33	MSH5, HLA	rs707938-G	0.32	7E-15		0.17	[0.13-0.21] years decrease	Affymetrix, Illumina [~ 2600000] (imputed)	N
609	chr6_cox_hap2	3239510	3239511	rs1802127	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.33	NR	rs1802127-T	0.016	3E-6	(women)	0.571389	[0.33-0.81] unit increase	Affymetrix [up to 8900000] (imputed)	N
609	chr6_cox_hap2	3239510	3239511	rs1802127	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.33	NR	rs1802127-T	0.016	1E-10		0.461925	[0.32-0.6] unit increase	Affymetrix [up to 8900000] (imputed)	N
609	chr6_cox_hap2	3240336	3240337	rs28399987	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs28399987-?		7E-8		1.06	[1.04-1.09]	Illumina [7645193] (imputed)	N
609	chr6_cox_hap2	3240336	3240337	rs28399987	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p21.33	MSH5, C6orf26	rs28399987-A	0.02	8E-8	(Turkish)	3.55	[2.17-5.79]	Illumina [up to 547389]	N
609	chr6_cox_hap2	3243052	3243053	rs3101017	33909500	Moll M	2021-04-28	Am J Physiol Lung Cell Mol Physiol	A Systematic Analysis of Protein-altering Exonic Variants in Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease	up to 31,465 European ancestry cases, up to 203,688 European ancestry controls, up to 1,413 African ancestry cases, up to 6,080 African ancestry controls, up to 287 East Asian ancestry cases, up to 7,484 East Asian ancestry controls, up to 61 Hispanic cases, up to 613 Hispanic controls	NA	6p21.33	VWA7	rs3101017-C	0.13	2E-14		1.12	[1.09 -1.15]	Illumina [at least 109036]	N
609	chr6_cox_hap2	3243052	3243053	rs3101017	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p21.33	VWA7	rs3101017-C		2E-35		0.041	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
609	chr6_cox_hap2	3247980	3247981	rs9461721	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.33		rs9461721-A	0.972	3E-27				Affymetrix [10369434] (imputed)	N
609	chr6_cox_hap2	3248692	3248693	rs3130490	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	6p21.33	NR	rs3130490-?	NR	5E-10				Affymetrix [~ 8270000] (imputed)	N
609	chr6_cox_hap2	3248692	3248693	rs3130490	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	6p21.33	NR	rs3130490-?	NR	2E-14				Affymetrix [~ 8270000] (imputed)	N
609	chr6_cox_hap2	3249070	3249071	rs143029752	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs143029752-?		3E-8		1.78	[1.45-2.19]	Illumina [7645193] (imputed)	N
609	chr6_cox_hap2	3249256	3249257	rs191306205	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	6p21.33	NR	rs191306205-?	NR	1E-9	(CCL19)	0.542377	[0.37-0.72] unit increase	Illumina [11901634] (imputed)	N
609	chr6_cox_hap2	3249302	3249303	rs527960948	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on switched memory B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs527960948-C	0.09002	2E-9		0.3289	[0.22-0.44] unit increase	Illumina [18238311] (imputed)	N
609	chr6_cox_hap2	3249302	3249303	rs527960948	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on IgD- CD38- B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs527960948-C	0.09002	4E-8		0.2922	[0.19-0.4] unit increase	Illumina [18238311] (imputed)	N
609	chr6_cox_hap2	3250025	3250026	rs805825	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.33		rs805825-G	0.561	1E-14				Affymetrix [10369434] (imputed)	N
609	chr6_cox_hap2	3250025	3250026	rs805825	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p21.33		rs805825-G	0.561	2E-10				Affymetrix [10369434] (imputed)	N
609	chr6_cox_hap2	3251230	3251231	rs707930	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	6p21.33	NR	rs707930-T	0.477089	4E-14		0.0517342	[0.038-0.065] unit decrease	Affymetrix [17914406] (imputed)	N
609	chr6_cox_hap2	3251812	3251813	rs6914412	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Mean platelet volume	21,347 Hispanic or Latin American individuals	NA	6p21.33		rs6914412-T	0.1345	4E-7		0.1401	[0.086-0.194] unit increase	Affymetrix, Illumina [NR] (imputed)	N
609	chr6_cox_hap2	3251812	3251813	rs6914412	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	6p21.33	VWA7	rs6914412-C	0.0959	9E-11		0.03949006	[0.028-0.051] unit increase	Affymetrix [~ 2500000] (imputed)	N
609	chr6_cox_hap2	3252160	3252161	rs707928	33563987	Tyrrell J	2021-02-09	Nat Commun	Genetic predictors of participation in optional components of UK Biobank.	Percentage of invited food questionnaires completed	300,639 European ancestry individuals	NA	6p21.33	NR	rs707928-A	0.66	8E-9		0.54	[0.36-0.72] unit decrease	Affymetrix [39302896] (imputed)	N
609	chr6_cox_hap2	3252160	3252161	rs707928	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling worry	372,869 European ancestry individuals	NA	6p21.33	SAPCD1	rs707928-A	0.346873	2E-8		5.643	unit increase	NR [10847151] (imputed)	N
609	chr6_cox_hap2	3255034	3255035	rs3130491	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Diastolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	6p21.33	VARS	rs3130491-A	0.3561	4E-14		0.317	[0.23-0.4] mmHg decrease	Affymetrix [NR] (imputed)	N
609	chr6_cox_hap2	3255088	3255089	rs707927	31932636	Hebbar P	2020-01-13	Sci Rep	Genome-wide association study identifies novel risk variants from RPS6KA1, CADPS, VARS, and DHX58 for fasting plasma glucose in Arab population.	Fasting plasma glucose	1,353 Arab ancestry individuals	1,176 Arab ancestry individuals	6p21.33	VARS, VWA7	rs707927-G	NR	3E-9		5.928	[NR] unit increase	Illumina [632375]	N
609	chr6_cox_hap2	3256118	3256119	rs909267	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	VARS	rs909267-C	NR	2E-8		0.0322466	[0.021-0.043] unit decrease	Affymetrix [321016] (imputed)	N
609	chr6_cox_hap2	3258712	3258713	rs915652	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p21.33	VARS	rs915652-A	0.337	4E-32				Illumina [118177]	N
609	chr6_cox_hap2	3265346	3265347	rs9469053	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on IgD- CD38dim B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs9469053-G	0.18398	1E-10		0.2372	[0.16-0.31] unit increase	Illumina [18238311] (imputed)	N
609	chr6_cox_hap2	3268499	3268500	rs6899983	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Aspartate aminotransferase levels in low alcohol consumption	8,716 individuals	NA	6p21.33	NR	rs6899983-?	NR	2E-7		0.1467	[0.092-0.202] unit increase	Illumina [~ 7800000] (imputed)	N
609	chr6_cox_hap2	3270631	3270632	rs9469054	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	6p21.33	VARS	rs9469054-A	0.0247	1E-20		0.1068719	[0.084-0.129] unit increase	Affymetrix [~ 2500000] (imputed)	N
609	chr6_cox_hap2	3271433	3271434	rs3115670	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	6p21.33	VARS	rs3115670-T	NR	1E-19		0.0626938	[0.049-0.076] unit decrease	Illumina [13520550] (imputed)	N
609	chr6_cox_hap2	3272411	3272412	rs2607015	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	VARS	rs2607015-C	NR	5E-12		0.0196764	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
609	chr6_cox_hap2	3272411	3272412	rs2607015	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	VARS	rs2607015-C	NR	3E-8		0.0175576	[0.011-0.024] unit increase	Affymetrix [323858] (imputed)	N
609	chr6_cox_hap2	3272411	3272412	rs2607015	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	VARS	rs2607015-C	NR	4E-11		0.0188809	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
609	chr6_cox_hap2	3272412	3272413	rs2753960	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	VARS	rs2753960-T	NR	1E-8		0.0161747	[0.011-0.022] unit decrease	Affymetrix [321016] (imputed)	N
609	chr6_cox_hap2	3272412	3272413	rs2753960	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	VARS	rs2753960-T	NR	3E-11		0.0207398	[0.015-0.027] unit decrease	Affymetrix [323123] (imputed)	N
609	chr6_cox_hap2	3272412	3272413	rs2753960	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	VARS	rs2753960-T	NR	3E-14		0.0219625	[0.016-0.028] unit increase	Affymetrix [321169] (imputed)	N
609	chr6_cox_hap2	3272412	3272413	rs2753960	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	6p21.33	VARS	rs2753960-T	0.4128	2E-14		0.02776258	[0.021-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
609	chr6_cox_hap2	3275431	3275432	rs1144710	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	6p21.33	LSM2	rs1144710-T	NR	2E-11		0.192529	[0.14-0.25] unit increase	Illumina [at least 950000] (imputed)	N
609	chr6_cox_hap2	3275431	3275432	rs1144710	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA	6p21.33	NR	rs1144710-?	NR	6E-6		0.0474	[0.027-0.068] unit increase	Illumina [at least 560000] (imputed)	N
609	chr6_cox_hap2	3275431	3275432	rs1144710	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p21.33	NR	rs1144710-?	NR	2E-10		0.0847	[0.059-0.111] unit increase	Illumina [at least 560000] (imputed)	N
610	chr6_cox_hap2	3287267	3287268	rs34636308	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	6p21.33	NR	rs34636308-?	NR	5E-14		7.528	NR z score decrease	Illumina [at least 830937] (imputed)	N
610	chr6_cox_hap2	3287657	3287658	rs2227955	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	C6orf48, HSPA1L, LSM2, HSPA1A, SNORD52, SNORD48, NEU1, SLC44A4	rs2227955-G	0.02306921	4E-9	(EA, gp41 C34 peptide, HIV)	0.8484	[0.57-1.13] unit increase	Affymetrix [509946]	N
610	chr6_cox_hap2	3287657	3287658	rs2227955	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	C6orf48, HSPA1L, LSM2, HSPA1A, SNORD52, SNORD48, NEU1, SLC44A4	rs2227955-G	0.02306921	4E-13	(EA, Neutrophil collagenase)	1.024	[0.75-1.3] unit increase	Affymetrix [509946]	N
610	chr6_cox_hap2	3287852	3287853	rs2227956	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CCL19	5,367 Icelandic ancestry individuals	NA	6p21.33		rs2227956-G	0.2402	7E-14		0.167141	[0.12-0.21] unit increase	Illumina [7506463] (imputed)	N
610	chr6_cox_hap2	3288109	3288110	rs2075799	23028341	Yang X	2012-09-13	PLoS Genet	Genome-wide association study for serum complement C3 and C4 levels in healthy Chinese subjects.	Complement C3 and C4 levels	1,999 Han Chinese ancestry male individuals	1,496 Han Chinese ancestry male individuals	6p21.33	C4	rs2075799-T	0.20	6E-97	(Serum level of C4)	0.17	[0.15-0.19] g/L decrease	Illumina [1940245] (imputed)	N
610	chr6_cox_hap2	3289819	3289820	rs115333512	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL36A	5,364 Icelandic ancestry individuals	NA	6p21.33		rs115333512-T	0.07275	7E-16		0.295426	[0.22-0.37] unit decrease	Illumina [7506463] (imputed)	N
610	chr6_cox_hap2	3291537	3291538	rs12213612	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p21.33	NR	rs12213612-?	NR	1E-8		0.1635	[0.11-0.22] unit increase	Illumina [at least 560000] (imputed)	N
610	chr6_cox_hap2	3293086	3293087	rs1043618	32589924	Bi W	2020-06-23	Am J Hum Genet	A Fast and Accurate Method for Genome-Wide Time-to-Event Data Analysis and Its Application to UK Biobank.	Cataract (time to event)	22,635 British ancestry cases, 260,236 British ancestry controls	NA	6p21.33	HSPA1A46	rs1043618-?	NR	4E-8				NR [~ 24000000] (imputed)	N
610	chr6_cox_hap2	3294807	3294808	rs506770	34642315	Ferreiro-Iglesias A	2021-10-12	Nat Commun	Germline determinants of humoral immune response to HPV-16 protect against oropharyngeal cancer.	Oropharynx cancer and human papilloma virus 16 negative oropharyngeal cancer	2,359 European ancestry cases, 565 European ancestry controls	NA	6p21.33		rs506770-C	NR	2E-6		1.2434		Illumina [up to 7574753] (imputed)	N
610	chr6_cox_hap2	3295944	3295945	rs17201192	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.33	HSPA1L	rs17201192-T	0.023301	2E-14		0.058121365	[0.043-0.073] unit increase	Affymetrix [93095623] (imputed)	N
610	chr6_cox_hap2	3296542	3296543	rs2763977	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HSPA1A	rs2763977-A	NR	2E-10		0.028855	[0.02-0.038] unit increase	Affymetrix [319769] (imputed)	N
610	chr6_cox_hap2	3296542	3296543	rs2763977	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HSPA1A	rs2763977-A	NR	4E-10		0.0284684	[0.02-0.037] unit increase	Affymetrix [319769] (imputed)	N
610	chr6_cox_hap2	3298967	3298967	rs139759813	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HSPA1A	rs139759813-GA	NR	2E-9		0.0236752	[0.016-0.031] unit decrease	Affymetrix [127266] (imputed)	N
610	chr6_cox_hap2	3304173	3304174	rs2763979	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)(bidirectional)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.33		rs2763979-C	NR	2E-14				Affymetrix [7846216] (imputed)	N
610	chr6_cox_hap2	3304173	3304174	rs2763979	32771030	Tangtanatakul P	2020-08-08	Arthritis Res Ther	Meta-analysis of genome-wide association study identifies FBN2 as a novel locus associated with systemic lupus erythematosus in Thai population.	Systemic lupus erythematosus	487 Thai cases, 1,606 Thai controls	405 Thai cases, 1,590 Thai controls	6p21.33	HSPA1A, HSPA1B	rs2763979-A	0.36	6E-6		1.2994	[NR]	Illumina [421909] (imputed)	N
610	chr6_cox_hap2	3308659	3308660	rs3115674	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.33	NR	rs3115674-T	0.983	1E-8		0.652	[0.51-0.8]	Illumina [11270530] (imputed)	N
610	chr6_cox_hap2	3308936	3308937	rs34278010	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs34278010-G	0.977	3E-44				Affymetrix [10369434] (imputed)	N
610	chr6_cox_hap2	3310441	3310442	rs2471980	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Prostate cancer	7,438 White British ancestry cases, 118,206 White British ancestry controls	NA	6p21.33		rs2471980-?	NR	2E-6		0.915623	[0.88-0.95]	NR [680312]	N
610	chr6_cox_hap2	3312040	3312041	rs4711279	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs4711279-C	0.824607758652095	1E-6	(IGP41)	0.1858	[0.11-0.26] unit decrease	Illumina [~ 2500000] (imputed)	N
610	chr6_cox_hap2	3312040	3312041	rs4711279	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs4711279-C	0.824401248864668	4E-6	(IGP1)	0.1774	[0.1-0.25] unit decrease	Illumina [~ 2500000] (imputed)	N
610	chr6_cox_hap2	3312040	3312041	rs4711279	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs4711279-C	0.823257144469526	3E-7	(IGP19)	0.1964	[0.12-0.27] unit decrease	Illumina [~ 2500000] (imputed)	N
610	chr6_cox_hap2	3312116	3312117	rs9368699	20041166	Fellay J	2009-12-24	PLoS Genet	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	6p21.33	SNORD52	rs9368699-?	NR	5E-8	(progression)			Illumina [NR]	N
610	chr6_cox_hap2	3312638	3312639	rs763298451	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	C6orf48, SNORD48	rs763298451-CT	NR	1E-12		0.0394762	[0.029-0.05] unit increase	Affymetrix [323123] (imputed)	N
610	chr6_cox_hap2	3314302	3314303	rs11968400	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	6p21.33	C6orf48	rs11968400-?	NR	6E-12		0.0655868	[0.047-0.084] unit increase	Illumina [4804024] (imputed)	N
610	chr6_cox_hap2	3315173	3315174	rs115487693	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	6p21.33	C6orf48	rs115487693-C	0.0445	4E-21		0.08313974	[0.066-0.1] unit decrease	Affymetrix [~ 2500000] (imputed)	N
610	chr6_cox_hap2	3318008	3318009	rs599707	29904099	Kottyan LC	2018-06-08	Genes Immun	Genetic variants at the 16p13 locus confer risk for eosinophilic esophagitis.	Eosinophilic esophagitis	1,210 European ancestry cases, 3,734 European ancestry controls	NA	6p21.33	C6orf48, HSPA1B	rs599707-?	0.886	3E-9		1.6920472		Illumina [79405]	N
610	chr6_cox_hap2	3318300	3318301	rs117217736	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.33	NR	rs117217736-T	0.991	1E-12		0.479	[0.28-0.68]	Illumina [11270530] (imputed)	N
610	chr6_cox_hap2	3319689	3319692	rs74887990	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	6p21.33	C6orf48	rs74887990-T	0.0231	6E-16		0.063891105	[0.048-0.079] unit increase	Affymetrix [93095623] (imputed)	N
610	chr6_cox_hap2	3321135	3321136	rs3130479	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	C6orf48	rs3130479-A	NR	2E-10		0.0294674	[0.02-0.038] unit increase	Affymetrix [321169] (imputed)	N
610	chr6_cox_hap2	3321610	3321611	rs9267576	31375628	Tengvall K	2019-08-02	Proc Natl Acad Sci U S A	Molecular mimicry between Anoctamin 2 and Epstein-Barr virus nuclear antigen 1 associates with multiple sclerosis risk.	Anti-anoctamin 2 antibody levels	11,936 European ancestry individuals	NA	6p21.33	NR	rs9267576-A	NR	2E-8		0.07	[0.041-0.099] unit increase	Illumina [615763]	N
610	chr6_cox_hap2	3322544	3322545	rs144527861	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	6p21.33	PRRC2A	rs144527861-A	0.1297	2E-9	(S1P d16:1)	0.115	[0.078-0.152] unit decrease	Illumina [~ 47000000] (imputed)	N
610	chr6_cox_hap2	3325630	3325631	rs28732162	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p21.33	NR	rs28732162-?	NR	7E-17		0.1769	[0.14-0.22] unit increase	Illumina [at least 560000] (imputed)	N
610	chr6_cox_hap2	3327678	3327679	rs9267578	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	NEU1	rs9267578-T	NR	6E-10		0.025611	[0.018-0.034] unit decrease	Affymetrix [319769] (imputed)	N
610	chr6_cox_hap2	3330210	3330211	rs2736429	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling nervous	373,121 European ancestry individuals	NA	6p21.33	NR	rs2736429-A	0.384863	6E-12		6.89	z score increase	NR [10847151] (imputed)	N
610	chr6_cox_hap2	3330749	3330750	rs370025470	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	6p21.33	NEU1	rs370025470-C	0.030144	3E-16		0.056601908	[0.043-0.07] unit increase	Affymetrix [93095623] (imputed)	N
610	chr6_cox_hap2	3331507	3331508	rs35745547	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	NEU1	rs35745547-A	NR	1E-9		0.0190063	[0.013-0.025] unit increase	Affymetrix [321169] (imputed)	N
610	chr6_cox_hap2	3332359	3332360	rs9267647	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	6p21.33	NEU1	rs9267647-T	0.132946	4E-11		0.022519508	[0.016-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
610	chr6_cox_hap2	3333000	3333001	rs115310850	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.33	NR	rs115310850-A	0.01	2E-11		0.616842	[0.44-0.8] unit increase	Affymetrix [up to 8900000] (imputed)	N
610	chr6_cox_hap2	3334657	3334658	rs9267650	27539887	Chahal HS	2016-08-19	Nat Commun	Genome-wide association study identifies 14 novel risk alleles associated with basal cell carcinoma.	Basal cell carcinoma	12.945 European ancestry cases, 274,252 European ancestry controls	4,242 European ancestry cases, 12,802 European ancestry controls	6p21.33	NEU1	rs9267650-T	0.05	1E-8		1.17	[NR]	Illumina [at least 560000] (imputed)	N
610	chr6_cox_hap2	3336451	3336452	rs622076	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C2	5,363 Icelandic ancestry individuals	NA	6p21.33		rs622076-A	0.1077	2E-23		0.300008	[0.24-0.36] unit increase	Illumina [7506463] (imputed)	N
610	chr6_cox_hap2	3336451	3336452	rs622076	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	6p21.33	NEU1	rs622076-A	0.1361	3E-14	(discovery)	0.0035	[0.0025-0.0045] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
610	chr6_cox_hap2	3337032	3337033	rs13118	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6p21.33	SLC44A4	rs13118-?	NR	5E-6	(TAG 52:6)	0.3502205	[0.2-0.5] unit increase	Affymetrix [at least 2500000] (imputed)	N
610	chr6_cox_hap2	3344908	3344909	rs74290525	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	NA	6p21.33	SLC44A4	rs74290525-G		1E-12	(conditional)	2.06	[NR]	Illumina [> 644674] (imputed)	N
610	chr6_cox_hap2	3344910	3344911	rs693906	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	6p21.33		rs693906-C	NR	2E-33		0.029	[0.024-0.034] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
610	chr6_cox_hap2	3344910	3344911	rs693906	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Scarlet fever	6,812 European ancestry cases, 113,837 European ancestry controls	NA	6p21.33	NR	rs693906-?	NR	7E-6		0.1149	[0.065-0.164] unit decrease	Illumina [at least 560000] (imputed)	N
610	chr6_cox_hap2	3346187	3346188	rs542418	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.33	NR	rs542418-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
610	chr6_cox_hap2	3346187	3346188	rs542418	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	6p21.33	NR	rs542418-?	NR	3E-6		0.0552	[0.032-0.078] unit increase	Illumina [at least 560000] (imputed)	N
610	chr6_cox_hap2	3346580	3346581	rs521977	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	SLC44A4	rs521977-T	NR	9E-19		0.0294152	[0.023-0.036] unit decrease	Affymetrix [323858] (imputed)	N
610	chr6_cox_hap2	3346580	3346581	rs521977	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	SLC44A4	rs521977-T	NR	3E-16		0.0271844	[0.021-0.034] unit decrease	Affymetrix [127266] (imputed)	N
610	chr6_cox_hap2	3346580	3346581	rs521977	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Perceived unattractiveness to mosquitoes	16,576 European ancestry individuals	NA	6p21.33	SLC44A4	rs521977-T	0.276	4E-7		0.131107	[0.08-0.182] unit increase	Illumina [7433384] (imputed)	N
610	chr6_cox_hap2	3346580	3346581	rs521977	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	6p21.33	SLC44A4	rs521977-T	NR	9E-7		0.0192183	[0.012-0.027] unit increase	Illumina [13519193] (imputed)	N
610	chr6_cox_hap2	3346580	3346581	rs521977	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	6p21.33	SLC44A4	rs521977-T	NR	4E-20		0.0380858	[0.03-0.046] unit increase	Illumina [13520550] (imputed)	N
610	chr6_cox_hap2	3346819	3346820	rs11966200	20526339	Quan C	2010-06-06	Nat Genet	Genome-wide association study for vitiligo identifies susceptibility loci at 6q27 and the MHC.	Vitiligo	1,117 Han Chinese ancestry cases, 1,429 Han Chinese ancestry controls	6,623 East Asian ancestry cases, 10,740 East Asian ancestry controls	6p21.33	HLA-C, HLA-B	rs11966200-A	0.06	1E-48		1.9	[1.74-2.07]	Illumina [493909]	N
610	chr6_cox_hap2	3347030	3347031	rs660550	31837886	Kennedy OJ	2019-12-02	Am J Kidney Dis	Coffee Consumption and Kidney Function: A Mendelian Randomization Study.	Coffee consumption (cups per day)	227,666 British ancestry individuals	NA	6p21.33	SLC44A4	rs660550-A	0.525	8E-9		0.034	NR cups per day decrease	NR [NR]	N
610	chr6_cox_hap2	3347716	3347717	rs577272	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs577272-G	NR	6E-9		0.0164512	[0.011-0.022] unit decrease	Affymetrix [321114] (imputed)	N
610	chr6_cox_hap2	3347716	3347717	rs577272	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs577272-G	NR	1E-21		0.0272058	[0.022-0.033] unit decrease	Affymetrix [321169] (imputed)	N
610	chr6_cox_hap2	3347716	3347717	rs577272	27286809	Ligthart S	2016-06-10	BMC Genomics	Bivariate genome-wide association study identifies novel pleiotropic loci for lipids and inflammation.	C-reactive protein levels or total cholesterol levels (pleiotropy)	65,000 individuals (C-reactive protein), 100,184 individuals (total cholesterol)	NA	6p21.33	SLC44A4	rs577272-A	NR	2E-8				NR [2501549] (imputed)	N
610	chr6_cox_hap2	3348243	3348244	rs644774	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs644774-C	NR	4E-22		0.0271946	[0.022-0.033] unit decrease	Affymetrix [319769] (imputed)	N
610	chr6_cox_hap2	3348243	3348244	rs644774	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs644774-C	NR	6E-21		0.0263821	[0.021-0.032] unit decrease	Affymetrix [319769] (imputed)	N
610	chr6_cox_hap2	3348243	3348244	rs644774	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs644774-C	NR	2E-13		0.0206859	[0.015-0.026] unit increase	Affymetrix [321016] (imputed)	N
610	chr6_cox_hap2	3348466	3348467	rs494620	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs494620-A	NR	1E-13		0.0214886	[0.016-0.027] unit increase	Affymetrix [319769] (imputed)	N
610	chr6_cox_hap2	3348466	3348467	rs494620	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	SLC44A4	rs494620-A	NR	4E-10		0.0201809	[0.014-0.026] unit increase	Affymetrix [323858] (imputed)	N
610	chr6_cox_hap2	3348466	3348467	rs494620	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs494620-A	NR	6E-13		0.0208264	[0.015-0.027] unit increase	Affymetrix [319769] (imputed)	N
610	chr6_cox_hap2	3348466	3348467	rs494620	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	SLC44A4	rs494620-A	NR	6E-9		0.0187173	[0.012-0.025] unit increase	Affymetrix [127266] (imputed)	N
610	chr6_cox_hap2	3348466	3348467	rs494620	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs494620-A	NR	7E-16		0.0236685	[0.018-0.029] unit increase	Affymetrix [321169] (imputed)	N
610	chr6_cox_hap2	3348466	3348467	rs494620	19448619	Stolk L	2009-05-15	Nat Genet	Loci at chromosomes 13, 19 and 20 influence age at natural menopause.	Menopause (age at onset)	2,979 European ancestry female individuals	2,560 European ancestry female individuals	6p21.33	NR	rs494620-?	NR	5E-7		0.3	[0.18-0.42] years increase	Illumina [315418]	N
610	chr6_cox_hap2	3349535	3349536	rs3130482	31879980	German CA	2019-12-26	Genet Epidemiol	Ordered multinomial regression for genetic association analysis of ordinal phenotypes at Biobank scale.	Hypertension	30,822 British ancestry normal blood pressure individuals, 25,242 British ancestry elevated blood pressure individuals, 50,461 British ancestry stage 1 hypertension individuals, 75,286 British ancestry stage 2 hypertension individuals, 3,754 British ancestry hypertension crisis individuals	NA	6p21.33	SLC44A4	rs3130482-?	NR	1E-10		0.03993774	NR unit increase	Affymetrix [464137]	N
610	chr6_cox_hap2	3349774	3349775	rs2763981	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs2763981-T	NR	6E-27		0.0318493	[0.026-0.038] unit decrease	Affymetrix [319769] (imputed)	N
610	chr6_cox_hap2	3349774	3349775	rs2763981	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs2763981-T	NR	3E-25		0.0308309	[0.025-0.037] unit decrease	Affymetrix [319769] (imputed)	N
610	chr6_cox_hap2	3349774	3349775	rs2763981	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs2763981-T	NR	3E-8		0.0165328	[0.011-0.022] unit decrease	Affymetrix [321114] (imputed)	N
610	chr6_cox_hap2	3349774	3349775	rs2763981	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	SLC44A4	rs2763981-T	NR	2E-27		0.0349933	[0.029-0.041] unit increase	Affymetrix [323123] (imputed)	N
610	chr6_cox_hap2	3349774	3349775	rs2763981	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs2763981-T	NR	1E-24		0.0307655	[0.025-0.037] unit decrease	Affymetrix [321169] (imputed)	N
610	chr6_cox_hap2	3349774	3349775	rs2763981	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	6p21.33	SLC44A4	rs2763981-A	NR	8E-14				Affymetrix, Illumina [NR] (imputed)	N
610	chr6_cox_hap2	3349774	3349775	rs2763981	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	6p21.33	SLC44A4	rs2763981-A	NR	1E-18	(EA)			Affymetrix, Illumina [NR] (imputed)	N
610	chr6_cox_hap2	3349774	3349775	rs2763981	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	6p21.33	SLC44A4	rs2763981-A	NR	3E-19	(EA)			Affymetrix, Illumina [NR] (imputed)	N
610	chr6_cox_hap2	3349774	3349775	rs2763981	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	6p21.33	SLC44A4	rs2763981-A	NR	1E-14				Affymetrix, Illumina [NR] (imputed)	N
610	chr6_cox_hap2	3349774	3349775	rs2763981	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	6p21.33	SLC44A4	rs2763981-A	NR	6E-14	(EA)	0.021	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
610	chr6_cox_hap2	3349774	3349775	rs2763981	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	6p21.33	SLC44A4	rs2763981-A	NR	1E-10		0.015	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
610	chr6_cox_hap2	3349774	3349775	rs2763981	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	6p21.33	SLC44A4	rs2763981-A	NR	4E-6		0.012	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
610	chr6_cox_hap2	3349774	3349775	rs2763981	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	6p21.33	SLC44A4	rs2763981-A	NR	2E-8	(EA)	0.021	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
610	chr6_cox_hap2	3349774	3349775	rs2763981	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	6p21.33	SLC44A4	rs2763981-A	NR	5E-11				Affymetrix, Illumina [NR] (imputed)	N
610	chr6_cox_hap2	3349774	3349775	rs2763981	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	6p21.33	SLC44A4	rs2763981-A	NR	3E-11	(EA)			Affymetrix, Illumina [NR] (imputed)	N
610	chr6_cox_hap2	3349774	3349775	rs2763981	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	6p21.33	SLC44A4	rs2763981-A	NR	7E-12				Affymetrix, Illumina [NR] (imputed)	N
610	chr6_cox_hap2	3349774	3349775	rs2763981	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	6p21.33	SLC44A4	rs2763981-A	NR	4E-12	(EA)			Affymetrix, Illumina [NR] (imputed)	N
610	chr6_cox_hap2	3349774	3349775	rs2763981	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	6p21.33	SLC44A4	rs2763981-A	NR	6E-9	(EA)	1.145	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
610	chr6_cox_hap2	3349774	3349775	rs2763981	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	6p21.33	SLC44A4	rs2763981-A	NR	3E-9		1.01	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
610	chr6_cox_hap2	3349774	3349775	rs2763981	30670697	Kilpelainen TO	2019-01-22	Nat Commun	Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity.	Triglycerides x physical activity interaction (2df test)	7,294 African American inactive individuals, 12,832 African American active individuals, 1,352 Asian ancestry inactive individuals, 3,049 Asian ancestry active individuals, 20,622 European ancestry inactive individuals, 51,480 European ancestry active individuals, 2,166 Hispanic or Latin American inactive individuals, 3,486 Hispanic or Latin American active individuals	580 African American inactive individuals, 1,540 African American active individuals, 1,217 South African Black ancestry inactive individuals, 389 South African Black ancestry active individuals, 765 East Asian ancestry inactive individuals, 1,814 East Asian ancestry active individuals,  724 South Asian ancestry inactive individuals, 1,424 South Asian ancestry active individuals, 32,456 European ancestry inactive individuals, 49,510 European ancestry active individuals, 2,619 Hispanic inactive individuals, 8,803 Hispanic active individuals	6p21.33	NR	rs2763981-A	0.7045	4E-14	(EA)			Affymetrix, Illumina [at least 2500000] (imputed)	N
610	chr6_cox_hap2	3349774	3349775	rs2763981	28334935	Raffield LM	2017-05-15	Hum Mol Genet	Genome-wide association study of iron traits and relation to diabetes in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL): potential genomic intersection of iron and glucose regulation?	Iron status biomarkers (total iron binding capacity)	12,586 Hispanic/Latino individuals	NA	6p21.33	SLC44A4	rs2763981-T	NR	8E-7		0.124	[0.075-0.173] unit decrease	Illumina [27700000] (imputed)	N
610	chr6_cox_hap2	3350168	3350169	rs9267653	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs9267653-T	NR	9E-9		0.0178718	[0.012-0.024] unit decrease	Affymetrix [319769] (imputed)	N
610	chr6_cox_hap2	3350168	3350169	rs9267653	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs9267653-T	NR	1E-8		0.0176946	[0.012-0.024] unit decrease	Affymetrix [319769] (imputed)	N
610	chr6_cox_hap2	3350168	3350169	rs9267653	26423011	Wain LV	2015-09-27	Lancet Respir Med	Novel insights into the genetics of smoking behaviour, lung function, and chronic obstructive pulmonary disease (UK BiLEVE): a genetic association study in UK Biobank.	Lung function (low FEV1 vs high FEV1)	19,493 European ancestry individuals with low FEV1 measurements, 9,808 European ancestry individuals with high FEV1 measurements	NA	6p21.33	SLC44A4	rs9267653-C	NR	4E-9		0.124	[0.083-0.165] unit increase	Affymetrix [28509962] (imputed)	N
610	chr6_cox_hap2	3350208	3350209	rs553108	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls	NA	6p21.33	SLC44A4	rs553108-A	0.418103	2E-10		0.0516698	[0.036-0.068] unit decrease	Affymetrix [7288503] (imputed)	N
610	chr6_cox_hap2	3350208	3350209	rs553108	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Ease of getting up in the morning	385,949 European ancestry individuals	NA	6p21.33	NR	rs553108-A	0.4159	3E-8		0.0097	[0.0062-0.0132] unit increase	Affymetrix, Illumina [10862568] (imputed)	N
610	chr6_cox_hap2	3350230	3350231	rs501942	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	6p21.33	NR	rs501942-T	0.09	3E-19		1.26	[1.2-1.32]	Illumina [8468885] (imputed)	N
610	chr6_cox_hap2	3350230	3350231	rs501942	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in ever smokers	23,223 European ancestry cases,  16,964 European ancestry controls	NA	6p21.33	SLC44A4	rs501942-T	0.101035865	3E-14		1.2034894	[1.147434239-1.262282973]	Illumina [10439017] (imputed)	N
610	chr6_cox_hap2	3350230	3350231	rs501942	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	6p21.33	SLC44A4	rs501942-T	0.098642093	8E-19		1.1851386	[1.141406179-1.230546538]	Illumina [10439017] (imputed)	N
610	chr6_cox_hap2	3350762	3350763	rs9267654	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs9267654-A	NR	2E-12		0.0251845	[0.018-0.032] unit decrease	Affymetrix [319769] (imputed)	N
610	chr6_cox_hap2	3350762	3350763	rs9267654	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs9267654-A	NR	3E-12		0.0249577	[0.018-0.032] unit decrease	Affymetrix [319769] (imputed)	N
610	chr6_cox_hap2	3350762	3350763	rs9267654	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs9267654-A	NR	4E-10		0.0223343	[0.015-0.029] unit increase	Affymetrix [321016] (imputed)	N
610	chr6_cox_hap2	3351643	3351644	rs573098	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs573098-A	NR	2E-20		0.0279205	[0.022-0.034] unit increase	Affymetrix [321016] (imputed)	N
610	chr6_cox_hap2	3351643	3351644	rs573098	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p21.33	SLC44A4	rs573098-A	NR	1E-9		0.0200634	[0.014-0.027] unit decrease	Affymetrix [323858] (imputed)	N
610	chr6_cox_hap2	3351643	3351644	rs573098	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	6p21.33	NR	rs573098-T	0.679422	2E-12		0.0509102	[0.037-0.065] unit decrease	Affymetrix [17914406] (imputed)	N
610	chr6_cox_hap2	3352351	3352352	rs12661281	25629512	Cheng CY	2015-01-28	Nat Commun	New loci and coding variants confer risk for age-related macular degeneration in East Asians.	Exudative age-related macular degeneration	2,119 East Asian ancestry cases, 5,691 East Asian ancestry controls	4,226 East Asian ancestry cases, 10,289 East Asian ancestry controls	6p21.33	SLC44A4	rs12661281-?	NR	1E-11		1.27	[NR]	Illumina [4471719] (imputed)	N
610	chr6_cox_hap2	3353677	3353678	rs2736428	20421499	Levy D	2010-04-26	Proc Natl Acad Sci U S A	Genome-wide association identifies OBFC1 as a locus involved in human leukocyte telomere biology.	Telomere length	3,417 European ancestry individuals	1,893 African American and European ancestry individuals, 2,876 European ancestry individuals	6p21.33	SLC44A4	rs2736428-T	NR	3E-6		0.05	[0.03-0.07] kb increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
610	chr6_cox_hap2	3355738	3355739	rs9267658	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6p21.33		rs9267658-T	0.1428	5E-12		0.0138	[0.0099-0.0177] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
610	chr6_cox_hap2	3355826	3355827	rs114400264	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		SLC44A4	rs114400264-?	NR	5E-9	(male)	2.81252	[NR] unit decrease	Affymetrix [NR] (imputed)	N
610	chr6_cox_hap2	3355987	3355988	rs9267659	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	6p21.33	SLC44A4	rs9267659-A	0.2004	4E-11		0.079	[0.056-0.102] unit increase	NR [7784415] (imputed)	N
610	chr6_cox_hap2	3356653	3356654	rs114951054	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		EHMT2-AS1	rs114951054-?	NR	2E-9	(male)	2.96479	[NR] unit decrease	Affymetrix [NR] (imputed)	N
610	chr6_cox_hap2	3356765	3356766	rs605203	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	6p21.33	NR	rs605203-A	0.62	4E-43		0.025	[0.021-0.029] unit increase	Affymetrix [2446094] (imputed)	N
610	chr6_cox_hap2	3356765	3356766	rs605203	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	6p21.33	NR	rs605203-A	0.62	5E-8				Affymetrix [2446094] (imputed)	N
610	chr6_cox_hap2	3357171	3357172	rs116369005	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	6p21.33	SLC44A4, EHMT2-AS1	rs116369005-C	0.021645	3E-10		0.052029066	[0.036-0.068] unit increase	Affymetrix [93095623] (imputed)	N
610	chr6_cox_hap2	3357389	3357390	rs41267086	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C4A;C4B	5,353 Icelandic ancestry individuals	NA	6p21.33		rs41267086-A	0.09194	2E-44		0.435404	[0.37-0.5] unit decrease	Illumina [7506463] (imputed)	N
610	chr6_cox_hap2	3357389	3357390	rs41267086	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.33	NR	rs41267086-?	NR	6E-12				Affymetrix [~ 8270000] (imputed)	N
610	chr6_cox_hap2	3357973	3357974	rs589428	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI in non-smokers	75,379 European ancestry women, 45,811 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	6p21.33	EHMT2	rs589428-G	0.651	2E-10	(EA)	0.016	[0.01-0.022] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
610	chr6_cox_hap2	3357973	3357974	rs589428	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	6p21.33	EHMT2	rs589428-G	0.65	1E-17	(EA)	0.024	[0.018-0.03] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
610	chr6_cox_hap2	3358193	3358194	rs41267090	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p21.33	EHMT2	rs41267090-T	0.05	8E-7	(EA)	2.82	[1.84-4.33]	Illumina [up to 547389]	N
610	chr6_cox_hap2	3360061	3360062	rs74434374	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NCR3	5,364 Icelandic ancestry individuals	NA	6p21.33		rs74434374-A	0.07046	4E-24		0.354873	[0.29-0.42] unit decrease	Illumina [7506463] (imputed)	N
610	chr6_cox_hap2	3360987	3360988	rs652888	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	EHMT2	rs652888-G	NR	3E-10		0.0207108	[0.014-0.027] unit decrease	Affymetrix [319769] (imputed)	N
610	chr6_cox_hap2	3360987	3360988	rs652888	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	EHMT2	rs652888-G	NR	1E-9		0.0200442	[0.014-0.027] unit decrease	Affymetrix [319769] (imputed)	N
610	chr6_cox_hap2	3360987	3360988	rs652888	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	EHMT2	rs652888-G	NR	1E-9		0.02033	[0.014-0.027] unit decrease	Affymetrix [321169] (imputed)	N
610	chr6_cox_hap2	3360987	3360988	rs652888	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p21.33	EHMT2	rs652888-G	NR	2E-8		0.0206131	[0.013-0.028] unit decrease	Affymetrix [323858] (imputed)	N
610	chr6_cox_hap2	3360987	3360988	rs652888	27157822	Hallberg P	2016-05-03	Lancet Diabetes Endocrinol	Genetic variants associated with antithyroid drug-induced agranulocytosis: a genome-wide association study in a European population.	Anti-thyroid drug induced agranulocytosis	38 European ancestry cases, 1 case, 5,170 European ancestry controls	NA	6p21.33	EHMT2	rs652888-?	NR	2E-11		4.73	[3.00-7.44]	Illumina [9380034] (imputed)	N
610	chr6_cox_hap2	3360987	3360988	rs652888	25802187	Jiang DK	2015-04-28	Hepatology	Genetic variants in five novel loci including CFB and CD40 predispose to chronic hepatitis B.	Chronic hepatitis B infection	2,514 Chinese ancestry cases, 1,130 Chinese ancestry controls	6,600 Chinese ancestry cases, 8,127 Chinese ancestry controls	6p21.33	EHMT2	rs652888-G	0.24	1E-6		1.14	[1.08-1.19]	Illumina [3680900] (imputed)	N
610	chr6_cox_hap2	3360987	3360988	rs652888	23760081	Kim YJ	2013-06-10	Hum Mol Genet	A genome-wide association study identified new variants associated with the risk of chronic hepatitis B.	Chronic hepatitis B infection	400 Korean ancestry cases, 1,000 Korean ancestry controls	971 Korean ancestry cases, 1,938 Korean ancestry controls	6p21.33	EHMT2	rs652888-?	NR	7E-13		1.38	[1.22-1.57]	Illumina [719265]	N
610	chr6_cox_hap2	3360987	3360988	rs652888	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.33	EHMT2	rs652888-C	0.2021	3E-46		2.71	[NR]	Illumina [242824]	N
610	chr6_cox_hap2	3361222	3361223	rs2844458	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	EHMT2	rs2844458-A	NR	5E-9		0.0178304	[0.012-0.024] unit increase	Affymetrix [319769] (imputed)	N
610	chr6_cox_hap2	3361222	3361223	rs2844458	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	EHMT2	rs2844458-A	NR	3E-8		0.0170038	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
610	chr6_cox_hap2	3365823	3365824	rs486416	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	6p21.33		rs486416-A	0.6376	6E-9		0.013	[0.0091-0.0169] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
610	chr6_cox_hap2	3365823	3365824	rs486416	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	6p21.33	EHMT2	rs486416-G	0.34730000000000005	1E-9		1.0203034		Affymetrix [11880941] (imputed)	N
610	chr6_cox_hap2	3368283	3368284	rs34929649	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	EHMT2	rs34929649-C	NR	3E-13		0.0219327	[0.016-0.028] unit increase	Affymetrix [321169] (imputed)	N
610	chr6_cox_hap2	3370585	3370586	rs115699278	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p21.33	EHMT2	rs115699278-T	0.011501	2E-9		0.06559309	[0.044-0.087] unit decrease	Affymetrix [93095623] (imputed)	N
610	chr6_cox_hap2	3372629	3372630	rs115062572	33841421	Li J	2021-03-25	Front Immunol	Variants at the MHC Region Associate With Susceptibility to <i>Clostridioides difficile</i> Infection: A Genome-Wide Association Study Using Comprehensive Electronic Health Records.	Clostridioides difficle infection in antibiotics-users	587 European ancestry cases, 3,166 European ancestry controls	NA	6p21.33	ZBTB12	rs115062572-T	0.022	1E-6		2.29	[1.7-2.98]	Illumina [64973696] (imputed)	N
610	chr6_cox_hap2	3372629	3372630	rs115062572	33841421	Li J	2021-03-25	Front Immunol	Variants at the MHC Region Associate With Susceptibility to <i>Clostridioides difficile</i> Infection: A Genome-Wide Association Study Using Comprehensive Electronic Health Records.	Clostridioides difficle infection	1,160 European ancestry cases, 14,144 European ancestry controls	NA	6p21.33	ZBTB12, EHMT2, C2, CYP21A2	rs115062572-T	0.0203	4E-6		1.74	[1.41-2.08]	Illumina [64973696] (imputed)	N
610	chr6_cox_hap2	3372629	3372630	rs115062572	32641083	Hillary RF	2020-07-08	Genome Med	Multi-method genome- and epigenome-wide studies of inflammatory protein levels in healthy older adults.	Tumor necrosis factor beta levels	982 Scottish ancestry individuals	NA	6p21.33	NR	rs115062572-T	0.01979	5E-10		1.23251	[0.84-1.62] unit decrease	Illumina [7903493] (imputed)	N
610	chr6_cox_hap2	3372629	3372630	rs115062572	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.33		rs115062572-T	0.02316600000000002	2E-8		1.0846895	[1.05-1.11]	Affymetrix, Illumina [9851866] (imputed)	N
610	chr6_cox_hap2	3372921	3372922	rs17207748	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		EHMT2	rs17207748-?	NR	6E-9	(male)	2.35655	[NR] unit decrease	Affymetrix [NR] (imputed)	N
610	chr6_cox_hap2	3373186	3373187	rs2243873	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	6p21.33	SLC44A4, EHMT2, STK19, CYP21A2, TNXB	rs2243873-?	NR	4E-11				Affymetrix, Illumina [18800000] (imputed)	N
610	chr6_cox_hap2	3373186	3373187	rs2243873	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	6p21.33	SLC44A4, EHMT2, STK19, CYP21A2, TNXB	rs2243873-?	NR	3E-14	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
610	chr6_cox_hap2	3373186	3373187	rs2243873	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	6p21.33	SLC44A4, EHMT2, STK19, CYP21A2, TNXB	rs2243873-?	NR	6E-10				Affymetrix, Illumina [18800000] (imputed)	N
610	chr6_cox_hap2	3373186	3373187	rs2243873	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	6p21.33	SLC44A4, EHMT2, STK19, CYP21A2, TNXB	rs2243873-?		7E-13	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
610	chr6_cox_hap2	3373186	3373187	rs2243873	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	6p21.33	SLC44A4, EHMT2, STK19, CYP21A2, TNXB	rs2243873-?	NR	4E-10				Affymetrix, Illumina [18800000] (imputed)	N
610	chr6_cox_hap2	3373186	3373187	rs2243873	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	6p21.33	SLC44A4, EHMT2, STK19, CYP21A2, TNXB	rs2243873-?	NR	1E-10	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
610	chr6_cox_hap2	3373186	3373187	rs2243873	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	6p21.33	SLC44A4, EHMT2, STK19, CYP21A2, TNXB	rs2243873-?	NR	6E-9				Affymetrix, Illumina [18800000] (imputed)	N
610	chr6_cox_hap2	3373186	3373187	rs2243873	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	6p21.33	SLC44A4, EHMT2, STK19, CYP21A2, TNXB	rs2243873-?	NR	3E-9	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
610	chr6_cox_hap2	3374291	3374292	rs115884658	32534018	Liu X	2020-06-10	Brain Behav Immun	Genetic factors underlying the bidirectional relationship between autoimmune and mental disorders - findings from a Danish population-based study.	Autoimmune traits	1,383 Danish ancestry cases, 62,656 Danish ancestry controls	NA	6p21.33	NR	rs115884658-A	0.047	2E-15		1.83	[1.6-2.1]	NR [7721839] (imputed)	N
610	chr6_cox_hap2	3374291	3374292	rs115884658	29358691	Bonas-Guarch S	2018-01-22	Nat Commun	Re-analysis of public genetic data reveals a rare X-chromosomal variant associated with type 2 diabetes.	Type 2 diabetes	7,522 European ancestry cases, 50,446 European ancestry controls	35,789 African-American, East Asian, South Asian, European or Hispanic cases, 56,738 African-American, East Asian, South Asian, European or Hispanic controls	6p21.33	EHMT2	rs115884658-A	NR	3E-10		1.21	[1.14-1.29]	Affymetrix, Illumina [1918233] (imputed)	N
610	chr6_cox_hap2	3374300	3374301	rs7887	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein EEF2K	5,361 Icelandic ancestry individuals	NA	6p21.33		rs7887-T	0.3571	6E-30		0.225707	[0.19-0.26] unit decrease	Illumina [7506463] (imputed)	N
610	chr6_cox_hap2	3374300	3374301	rs7887	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C4A;C4B	5,362 Icelandic ancestry individuals	NA	6p21.33		rs7887-T	0.3571	8E-212		0.572662	[0.54-0.61] unit decrease	Illumina [7506463] (imputed)	N
610	chr6_cox_hap2	3374427	3374428	rs2844456	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p21.33	NR	rs2844456-C	0.06	7E-13		0.82	[0.78-0.87]	Affymetrix [9886854] (imputed)	N
610	chr6_cox_hap2	3374427	3374428	rs2844456	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p21.33	NR	rs2844456-C	0.06	9E-13			[NR]	Affymetrix [9886854] (imputed)	N
610	chr6_cox_hap2	3374427	3374428	rs2844456	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in non-current smokers	16,488 European ancestry cases, 169,688 European ancestry controls	NA	6p21.33	NR	rs2844456-C	0.06	9E-13		0.82	[0.78-0.87]	Affymetrix [9886854] (imputed)	N
610	chr6_cox_hap2	3374427	3374428	rs2844456	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	6p21.33	NR	rs2844456-?		4E-16	(AGER)	0.6356	[NR] unit decrease	Illumina [NR]	N
610	chr6_cox_hap2	3375886	3375887	rs118097312	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Red blood cell count	108,794 Japanese ancestry individuals	NA	6p21.33	NR	rs118097312-?	NR	1E-10		0.05623	[0.039-0.073] unit decrease novel	Illumina [6108953] (imputed)	N
610	chr6_cox_hap2	3376600	3376600	rs750497811	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.33	C2	rs750497811-GA	NR	7E-11		0.0409958	[0.029-0.053] unit increase	Affymetrix [321114] (imputed)	N
610	chr6_cox_hap2	3377006	3377007	rs9267663	22566634	Benjamin DJ	2012-05-07	Proc Natl Acad Sci U S A	The genetic architecture of economic and political preferences.	Economic and political preferences (environmentalism)	9,617 European ancestry individuals	NA	6p21.33	EHMT2	rs9267663-T	NR	6E-6		0.29	[0.16-0.42] unit decrease	Illumina [628922]	N
610	chr6_cox_hap2	3378518	3378519	rs114508013	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs114508013-G	0.9640625	5E-41	(CFB, 4129_72_1)	0.89926857	[0.77-1.03] unit increase	Illumina [> 1000000] (imputed)	N
610	chr6_cox_hap2	3378518	3378519	rs114508013	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs114508013-G	0.9640625	4E-14	(FTMT, 8048_9_3)	0.51218635	[0.38-0.64] unit decrease	Illumina [> 1000000] (imputed)	N
610	chr6_cox_hap2	3378518	3378519	rs114508013	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs114508013-G	0.9640625	3E-16	(DEFB119, 13455_10_3)	0.5455914	[0.42-0.68] unit decrease	Illumina [> 1000000] (imputed)	N
610	chr6_cox_hap2	3378518	3378519	rs114508013	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs114508013-G	0.9640625	3E-11	(MICA, 2730_58_2)	0.45406085	[0.32-0.59] unit increase	Illumina [> 1000000] (imputed)	N
610	chr6_cox_hap2	3378518	3378519	rs114508013	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs114508013-G	0.9640625	2E-129	(TNXB, 5698_60_3)	1.5771569	[1.46-1.7] unit increase	Illumina [> 1000000] (imputed)	N
610	chr6_cox_hap2	3378518	3378519	rs114508013	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs114508013-G	0.9640625	1E-66	(C2, 3186_2_2)	1.1762669	[1.05-1.31] unit increase	Illumina [> 1000000] (imputed)	N
610	chr6_cox_hap2	3378518	3378519	rs114508013	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs114508013-G	0.9640625	1E-60	(ISG15, 14148_2_3)	1.1050375	[0.98-1.23] unit increase	Illumina [> 1000000] (imputed)	N
610	chr6_cox_hap2	3378875	3378876	rs45462992	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6p21.33		rs45462992-?	NR	4E-6		0.86602	[0.8-0.93]	NR [685523]	N
610	chr6_cox_hap2	3379426	3379427	rs2844455	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	C2, ZBTB12	rs2844455-T	NR	2E-11		0.0245279	[0.017-0.032] unit increase	Affymetrix [319769] (imputed)	N
610	chr6_cox_hap2	3379426	3379427	rs2844455	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	C2, ZBTB12	rs2844455-T	NR	5E-11		0.0238761	[0.017-0.031] unit increase	Affymetrix [319769] (imputed)	N
610	chr6_cox_hap2	3379426	3379427	rs2844455	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	C2, ZBTB12	rs2844455-T	NR	2E-11		0.0246589	[0.017-0.032] unit increase	Affymetrix [321169] (imputed)	N
610	chr6_cox_hap2	3380079	3380080	rs558702	24871463	Armstrong DL	2014-05-29	Genes Immun	GWAS identifies novel SLE susceptibility genes and explains the association of the HLA region.	Systemic lupus erythematosus	725 European ancestry cases, 2,438 European ancestry controls	NA	6p21.33	C2	rs558702-A	0.1	8E-21		2.276	[2.097-2.47]	Illumina [NR]	N
610	chr6_cox_hap2	3380609	3380610	rs9267665	21764829	Png E	2011-07-15	Hum Mol Genet	A genome-wide association study of hepatitis B vaccine response in an Indonesian population reveals multiple independent risk variants in the HLA region.	Hepatitis B vaccine response	1,683 Indonesian ancestry individuals	1,931 Indonesian ancestry individuals	6p21.33	HLA	rs9267665-?	NR	1E-17		2.05	[1.64-2.57]	Illumina [455508]	N
610	chr6_cox_hap2	3385466	3385467	rs586346	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Coffee consumption	335,909 European ancestry individuals	39,924 European ancestry individuals	6p21.33	C2	rs586346-T	0.3648	7E-10		0.0095	[0.0066-0.0124] unit increase	Affymetrix [~ 7740000] (imputed)	N
610	chr6_cox_hap2	3385796	3385797	rs1313996	32339537	Roberts V	2020-04-24	J Invest Dermatol	Genome wide association study identifies genetic associations with perceived age.	Youthful appearance (self-reported)	423,992 European ancestry individuals	NA	6p21.33	C2	rs1313996-T	0.363603	4E-11		0.970678	NR	Affymetrix [~ 9600000] (imputed)	N
610	chr6_cox_hap2	3385796	3385797	rs1313996	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p21.33	NR	rs1313996-?	NR	7E-17		0.1086	[0.083-0.134] unit increase	Illumina [at least 560000] (imputed)	N
610	chr6_cox_hap2	3387212	3387213	rs116508221	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		C2	rs116508221-?	NR	8E-10	(male)	3.05228	[NR] unit decrease	Affymetrix [NR] (imputed)	N
610	chr6_cox_hap2	3388187	3388188	rs519417	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p21.33	NR	rs519417-?	NR	1E-6		4.887	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
610	chr6_cox_hap2	3388187	3388188	rs519417	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	6p21.33	ZBTB12, CFB	rs519417-G	NR	7E-11		0.207694	[0.15-0.27] unit increase	Illumina [at least 950000] (imputed)	N
610	chr6_cox_hap2	3388187	3388188	rs519417	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p21.33	NR	rs519417-?	NR	3E-9		0.0882	[0.059-0.117] unit increase	Illumina [at least 560000] (imputed)	N
610	chr6_cox_hap2	3388249	3388250	rs622871	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	6p21.33	NR	rs622871-?	NR	7E-18	(male)	0.32361	[0.25-0.4] unit decrease	Affymetrix [7794483] (imputed)	N
610	chr6_cox_hap2	3388249	3388250	rs622871	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	6p21.33	NR	rs622871-?	NR	6E-19	(female)	0.23136	[0.18-0.28] unit decrease	Affymetrix [7794483] (imputed)	N
610	chr6_cox_hap2	3388249	3388250	rs622871	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	6p21.33	NR	rs622871-?	NR	5E-32		0.28011	[0.23-0.33] unit decrease	Affymetrix [7794483] (imputed)	N
610	chr6_cox_hap2	3388249	3388250	rs622871	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA	6p21.33	NR	rs622871-?	NR	2E-6		0.0384	[0.023-0.054] unit increase	Illumina [at least 560000] (imputed)	N
610	chr6_cox_hap2	3388249	3388250	rs622871	28762467	Wadelius M	2017-08-01	Clin Pharmacol Ther	Sulfasalazine-Induced Agranulocytosis Is Associated With the Human Leukocyte Antigen Locus.	Sulfasalazine-induced agranulocytosis	36 European ancestry cases, 5,170 European ancestry untreated controls	NA	6p21.33	C2	rs622871-?	NR	7E-7		3.29	[2.06-5.27]	Illumina [9380034] (imputed)	N
610	chr6_cox_hap2	3388249	3388250	rs622871	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.33	C2	rs622871-G	NR	4E-9	(women)	0.0303318	[0.02-0.04] unit decrease	Illumina [13520550] (imputed)	N
610	chr6_cox_hap2	3388249	3388250	rs622871	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.33	C2	rs622871-G	NR	1E-10		0.0232703	[0.016-0.03] unit decrease	Illumina [13520550] (imputed)	N
610	chr6_cox_hap2	3388912	3388913	rs3128761	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)(bidirectional)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.33		rs3128761-A	NR	4E-7				Affymetrix [7846216] (imputed)	N
610	chr6_cox_hap2	3390564	3390565	rs561312719	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs561312719-C	0.067	6E-73	(Ubiquitin carboxyl-terminal hydrolase 25, USP25.9215.117.3)	0.94	[0.84-1.04] unit increase	Affymetrix [10572788] (imputed)	N
610	chr6_cox_hap2	3391065	3391066	rs532086	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	C2	rs532086-C	NR	2E-14		0.0323897	[0.024-0.041] unit decrease	Affymetrix [323858] (imputed)	N
610	chr6_cox_hap2	3391065	3391066	rs532086	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	C2	rs532086-C	NR	1E-12		0.0302037	[0.022-0.039] unit decrease	Affymetrix [127266] (imputed)	N
610	chr6_cox_hap2	3391065	3391066	rs532086	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	C2	rs532086-C	NR	9E-10		0.0255355	[0.017-0.034] unit increase	Affymetrix [323123] (imputed)	N
610	chr6_cox_hap2	3391065	3391066	rs532086	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	6p21.33	C2	rs532086-T	0.859	3E-6		0.0016	[0.00062-0.00258] unit increase	Affymetrix [NR] (imputed)	N
610	chr6_cox_hap2	3391487	3391488	rs685031	30104761	Zhou W	2018-08-13	Nat Genet	Efficiently controlling for case-control imbalance and sample relatedness in large-scale genetic association studies.	Coronary artery disease	31,355 European ancestry cases, 377,103 European ancestry controls	NA	6p21.33	C2	rs685031-A	0.389	9E-9				Affymetrix [28000000] (imputed)	N
610	chr6_cox_hap2	3391487	3391488	rs685031	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	6p21.33	C2	rs685031-A	0.646	5E-10		0.043	[0.029-0.057] unit increase	Affymetrix [7947838] (imputed)	N
610	chr6_cox_hap2	3391780	3391781	rs2844452	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	C2	rs2844452-G	NR	6E-12		0.0195783	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
610	chr6_cox_hap2	3391780	3391781	rs2844452	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	C2	rs2844452-G	NR	6E-11		0.0206929	[0.015-0.027] unit increase	Affymetrix [323858] (imputed)	N
610	chr6_cox_hap2	3391780	3391781	rs2844452	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	C2	rs2844452-G	NR	4E-11		0.0187691	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
610	chr6_cox_hap2	3391780	3391781	rs2844452	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	C2	rs2844452-G	NR	2E-9		0.0190129	[0.013-0.025] unit increase	Affymetrix [127266] (imputed)	N
610	chr6_cox_hap2	3391897	3391897	rs111329206	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	C2	rs111329206-TGGGCGGATCATGA	NR	1E-15		0.0257236	[0.019-0.032] unit decrease	Affymetrix [323123] (imputed)	N
610	chr6_cox_hap2	3393435	3393436	rs9267673	29185836	Chen MH	2017-11-29	Platelets	Exome-chip meta-analysis identifies association between variation in ANKRD26 and platelet aggregation.	Platelet aggregation	3,664 European ancestry individuals, 549 Old Order Amish (founder/genetic isolate) individuals	1,184 European ancestry individuals, 613 African American individuals	6p21.33	C2	rs9267673-T	0.114	7E-6	(collagen 1)	0.173	[0.097-0.249] unit decrease	Illumina [129094]	N
610	chr6_cox_hap2	3393435	3393436	rs9267673	21105107	Clifford RJ	2010-12-01	Hepatology	Genetic variations at loci involved in the immune response are risk factors for hepatocellular carcinoma.	Hepatocellular carcinoma	180 Korean ancestry cases, 271 Korean ancestry controls	206 Korean ancestry cases, 416 East Asian ancestry controls,	6p21.33	C2	rs9267673-?	0.08	2E-6		1.97	[1.47-2.64]	Affymetrix [658897]	N
610	chr6_cox_hap2	3393713	3393714	rs644045	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	6p21.33	C2	rs644045-A	0.3528	3E-13		0.0413	[0.03-0.052] unit decrease	Affymetrix [at least 7947838] (imputed)	N
610	chr6_cox_hap2	3393713	3393714	rs644045	28881265	Sobalska-Kwapis M	2017-09-01	Eur J Obstet Gynecol Reprod Biol	New variants near RHOJ and C2, HLA-DRA region and susceptibility to endometriosis in the Polish population-The genome-wide association study.	Endometriosis	171 European ancestry cases, 2,934 European ancestry controls	NA	6p21.33	C2, LOC101929163, HLA-DRA	rs644045-T	0.2853	2E-8		1.955	[1.541-2.48]	Illumina [274400]	N
610	chr6_cox_hap2	3394578	3394579	rs3130682	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	6p21.33	C2	rs3130682-T	NR	1E-16		0.0630215	[0.048-0.078] unit decrease	Illumina [13520550] (imputed)	N
610	chr6_cox_hap2	3395685	3395686	rs3128759	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	153,512 East Asian ancestry individuals	NA	6p21.33		rs3128759-T	0.915106	7E-17		0.0465594	[0.036-0.058] unit increase	Illumina [13479135] (imputed)	N
610	chr6_cox_hap2	3397014	3397015	rs115009784	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL15	5,365 Icelandic ancestry individuals	NA	6p21.33		rs115009784-A	0.04844	1E-13		0.324224	[0.24-0.41] unit decrease	Illumina [7506463] (imputed)	N
610	chr6_cox_hap2	3398122	3398123	rs3130683	28714975	Nelson CP	2017-07-17	Nat Genet	Association analyses based on false discovery rate implicate new loci for coronary artery disease.	Coronary artery disease (myocardial infarction, percutaneous transluminal coronary angioplasty, coronary artery bypass grafting, angina or chromic ischemic heart disease)	18,467 European and unknown ancestry cases, 45,264 European and unknown ancestry controls	57,347 European and unknown ancestry cases, 219,521 European and unknown ancestry controls	6p21.33	C2	rs3130683-T	0.86	3E-8		1.08	[1.05-1.11]	Affymetrix [9149595] (imputed)	N
610	chr6_cox_hap2	3402239	3402240	rs497309	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in diabetes	70,762 European ancestry individuals, 20,967 African American individuals	NA	6p21.33	C2	rs497309-A	0.902	5E-12		1.009	[0.72-1.3] unit increase	Affymetrix [NR] (imputed)	N
610	chr6_cox_hap2	3402396	3402397	rs9267677	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	6p21.33	Intergenic	rs9267677-T	0.8962	7E-16	(MTAG)	0.0218	[0.017-0.027] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
610	chr6_cox_hap2	3402396	3402397	rs9267677	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6p21.33		rs9267677-T	0.9029	4E-14		0.018	[0.013-0.023] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
610	chr6_cox_hap2	3402396	3402397	rs9267677	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6p21.33	Intergenic	rs9267677-T	0.9029	8E-18	(MTAG)	0.0191	[0.015-0.023] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
610	chr6_cox_hap2	3402396	3402397	rs9267677	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	6p21.33	Intergenic	rs9267677-T	0.9038	2E-9	(MTAG)	0.0233	[0.016-0.031] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
610	chr6_cox_hap2	3403699	3403700	rs2734335	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	C2	rs2734335-A	NR	2E-8		0.0157901	[0.01-0.021] unit decrease	Affymetrix [321016] (imputed)	N
610	chr6_cox_hap2	3404110	3404111	rs556679	33893285	Guindo-Martinez M	2021-04-23	Nat Commun	The impact of non-additive genetic associations on age-related complex diseases.	Age-related macular degeneration	3,685 European ancestry cases, 52,952 European ancestry controls	NA	6p21.33		rs556679-T	0.1113519	5E-21		0.66		Affymetrix [15377238] (imputed)	N
610	chr6_cox_hap2	3405728	3405729	rs7746553	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	6p21.33	C2	rs7746553-C	0.848517	5E-8		0.0160902	[0.01-0.022] unit increase	NR [16516521] (imputed)	N
610	chr6_cox_hap2	3406974	3406975	rs9283893	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	SKIV2L, C2, XXbac-BPG116M5.17, NELFE, MIR1236, DXO, STK19	rs9283893-A	0.0446339	1E-32	(Neutrophil collagenase)	1.199	[1.01-1.39] unit increase	Affymetrix [509946]	N
611	chr6_cox_hap2	3410509	3410510	rs184265581	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	6p21.33	NR	rs184265581-C	0.012356999999999951	6E-27		0.132322	[0.11-0.16] unit increase	Affymetrix [16580851] (imputed)	N
611	chr6_cox_hap2	3413559	3413560	rs9332739	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CFB	5,365 Icelandic ancestry individuals	NA	6p21.33		rs9332739-C	0.0495	8E-121		0.960939	[0.88-1.04] unit decrease	Illumina [7506463] (imputed)	N
611	chr6_cox_hap2	3413559	3413560	rs9332739	22705344	Sobrin L	2012-06-15	Ophthalmology	Heritability and genome-wide association study to assess genetic differences between advanced age-related macular degeneration subtypes.	Age-related macular degeneration (geographic atrophy)	819 European ancestry geographic atrophy cases, 4,134 European ancestry controls	NA	6p21.33	C2	rs9332739-?	0.955	1E-6		2.63	[1.79-3.85]	Affymetrix, Illumina [6036699] (imputed)	N
611	chr6_cox_hap2	3413559	3413560	rs9332739	22705344	Sobrin L	2012-06-15	Ophthalmology	Heritability and genome-wide association study to assess genetic differences between advanced age-related macular degeneration subtypes.	Age-related macular degeneration (choroidal neovascularisation)	1,775 European ancestry choroidal neovascularization cases, 4,134 European ancestry controls	4,515 European and unknown ancestry choroidal neovascularization cases, 15,240 European and unknown ancestry controls	6p21.33	C2	rs9332739-?	0.955	2E-8		2.08	[1.61-2.7]	Affymetrix, Illumina [6036699] (imputed)	N
611	chr6_cox_hap2	3413559	3413560	rs9332739	21665990	Yu Y	2011-06-10	Hum Mol Genet	Common variants near FRK/COL10A1 and VEGFA are associated with advanced age-related macular degeneration.	Age-related macular degeneration	2,594 European ancestry cases, 4,134 European ancestry controls	5,640 European ancestry cases, 52,174 European ancestry controls	6p21.33	C2	rs9332739-?	0.96	2E-23		2.17	[NR]	Affymetrix [6036699] (imputed)	N
611	chr6_cox_hap2	3414885	3414886	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ZNF276	5,363 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	6E-17		0.263299	[0.2-0.32] unit increase	Illumina [7506463] (imputed)	N
611	chr6_cox_hap2	3414885	3414886	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ZAP70	5,357 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	2E-20		0.28156	[0.22-0.34] unit increase	Illumina [7506463] (imputed)	N
611	chr6_cox_hap2	3414885	3414886	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein WIF1	5,349 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	4E-12		0.207313	[0.15-0.27] unit increase	Illumina [7506463] (imputed)	N
611	chr6_cox_hap2	3414885	3414886	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein UTS2	5,348 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	2E-13		0.213721	[0.16-0.27] unit increase	Illumina [7506463] (imputed)	N
611	chr6_cox_hap2	3414885	3414886	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TPM2	5,353 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	6E-19		0.271948	[0.21-0.33] unit increase	Illumina [7506463] (imputed)	N
611	chr6_cox_hap2	3414885	3414886	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TMCC3	5,355 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	6E-19		0.272099	[0.21-0.33] unit increase	Illumina [7506463] (imputed)	N
611	chr6_cox_hap2	3414885	3414886	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SYNCRIP	5,354 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	3E-16		0.244214	[0.19-0.3] unit increase	Illumina [7506463] (imputed)	N
611	chr6_cox_hap2	3414885	3414886	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RPS10	5,348 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	8E-14		0.223731	[0.16-0.28] unit increase	Illumina [7506463] (imputed)	N
611	chr6_cox_hap2	3414885	3414886	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RNF43	5,340 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	2E-12		0.20687	[0.15-0.26] unit increase	Illumina [7506463] (imputed)	N
611	chr6_cox_hap2	3414885	3414886	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RGS8	5,356 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	5E-18		0.263545	[0.2-0.32] unit increase	Illumina [7506463] (imputed)	N
611	chr6_cox_hap2	3414885	3414886	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RAD51	5,354 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	2E-17		0.254863	[0.2-0.31] unit increase	Illumina [7506463] (imputed)	N
611	chr6_cox_hap2	3414885	3414886	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RAB5C	5,347 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	8E-15		0.22726	[0.17-0.28] unit increase	Illumina [7506463] (imputed)	N
611	chr6_cox_hap2	3414885	3414886	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RAB17	5,352 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	2E-16		0.244122	[0.19-0.3] unit increase	Illumina [7506463] (imputed)	N
611	chr6_cox_hap2	3414885	3414886	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PTPN1	5,343 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	2E-12		0.199884	[0.14-0.26] unit increase	Illumina [7506463] (imputed)	N
611	chr6_cox_hap2	3414885	3414886	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein POLR1C	5,352 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	4E-15		0.236472	[0.18-0.3] unit increase	Illumina [7506463] (imputed)	N
611	chr6_cox_hap2	3414885	3414886	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PIK3CG	5,349 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	3E-18		0.254662	[0.2-0.31] unit increase	Illumina [7506463] (imputed)	N
611	chr6_cox_hap2	3414885	3414886	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PCDHB4	5,352 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	1E-14		0.230172	[0.17-0.29] unit increase	Illumina [7506463] (imputed)	N
611	chr6_cox_hap2	3414885	3414886	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PCDHB14	5,352 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	9E-17		0.252266	[0.19-0.31] unit increase	Illumina [7506463] (imputed)	N
611	chr6_cox_hap2	3414885	3414886	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NRXN3	5,346 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	3E-14		0.227034	[0.17-0.29] unit increase	Illumina [7506463] (imputed)	N
611	chr6_cox_hap2	3414885	3414886	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NDUFB4	5,364 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	9E-14		0.235159	[0.17-0.3] unit increase	Illumina [7506463] (imputed)	N
611	chr6_cox_hap2	3414885	3414886	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MST1R	5,341 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	7E-16		0.227077	[0.17-0.28] unit increase	Illumina [7506463] (imputed)	N
611	chr6_cox_hap2	3414885	3414886	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MOCS3	5,351 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	8E-15		0.232526	[0.17-0.29] unit increase	Illumina [7506463] (imputed)	N
611	chr6_cox_hap2	3414885	3414886	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein KLK6	5,348 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	1E-15		0.225461	[0.17-0.28] unit increase	Illumina [7506463] (imputed)	N
611	chr6_cox_hap2	3414885	3414886	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein KLK12	5,359 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	1E-19		0.280976	[0.22-0.34] unit increase	Illumina [7506463] (imputed)	N
611	chr6_cox_hap2	3414885	3414886	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL18R1	5,351 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	5E-12		0.21193	[0.15-0.27] unit increase	Illumina [7506463] (imputed)	N
611	chr6_cox_hap2	3414885	3414886	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL10RA	5,353 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	1E-13		0.230011	[0.17-0.29] unit increase	Illumina [7506463] (imputed)	N
611	chr6_cox_hap2	3414885	3414886	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IGFL3	5,350 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	5E-15		0.237003	[0.18-0.3] unit increase	Illumina [7506463] (imputed)	N
611	chr6_cox_hap2	3414885	3414886	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GBP6	5,348 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	5E-12		0.206328	[0.15-0.26] unit increase	Illumina [7506463] (imputed)	N
611	chr6_cox_hap2	3414885	3414886	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FRZB	5,350 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	5E-13		0.207917	[0.15-0.26] unit increase	Illumina [7506463] (imputed)	N
611	chr6_cox_hap2	3414885	3414886	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FCER1A	5,348 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	1E-19		0.272221	[0.21-0.33] unit increase	Illumina [7506463] (imputed)	N
611	chr6_cox_hap2	3414885	3414886	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DSG1	5,349 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	4E-16		0.242273	[0.18-0.3] unit increase	Illumina [7506463] (imputed)	N
611	chr6_cox_hap2	3414885	3414886	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DCUN1D5	5,344 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	2E-13		0.212735	[0.16-0.27] unit increase	Illumina [7506463] (imputed)	N
611	chr6_cox_hap2	3414885	3414886	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CRABP1	5,340 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	4E-13		0.209239	[0.15-0.27] unit increase	Illumina [7506463] (imputed)	N
611	chr6_cox_hap2	3414885	3414886	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CLEC12B	5,357 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	4E-18		0.267882	[0.21-0.33] unit increase	Illumina [7506463] (imputed)	N
611	chr6_cox_hap2	3414885	3414886	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CDK5;CDK5R1	5,339 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	2E-15		0.225529	[0.17-0.28] unit increase	Illumina [7506463] (imputed)	N
611	chr6_cox_hap2	3414885	3414886	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CCL1	5,354 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	1E-15		0.242251	[0.18-0.3] unit increase	Illumina [7506463] (imputed)	N
611	chr6_cox_hap2	3414885	3414886	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CA4	5,356 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	2E-13		0.225651	[0.17-0.29] unit increase	Illumina [7506463] (imputed)	N
611	chr6_cox_hap2	3414885	3414886	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C2orf40	5,353 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	3E-12		0.217148	[0.16-0.28] unit increase	Illumina [7506463] (imputed)	N
611	chr6_cox_hap2	3414885	3414886	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein BCL2L10	5,355 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	9E-14		0.231319	[0.17-0.29] unit increase	Illumina [7506463] (imputed)	N
611	chr6_cox_hap2	3414885	3414886	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein BCL2L1	5,350 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	1E-17		0.257737	[0.2-0.32] unit increase	Illumina [7506463] (imputed)	N
611	chr6_cox_hap2	3414885	3414886	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein AZGP1	5,362 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	1E-19		0.281057	[0.22-0.34] unit increase	Illumina [7506463] (imputed)	N
611	chr6_cox_hap2	3414885	3414886	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ANXA10	5,345 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	6E-13		0.218401	[0.16-0.28] unit increase	Illumina [7506463] (imputed)	N
611	chr6_cox_hap2	3414885	3414886	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein AKT3	5,346 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	2E-14		0.217044	[0.16-0.27] unit increase	Illumina [7506463] (imputed)	N
611	chr6_cox_hap2	3414885	3414886	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein AHSA1	5,351 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	2E-15		0.242628	[0.18-0.3] unit increase	Illumina [7506463] (imputed)	N
611	chr6_cox_hap2	3414885	3414886	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ADGRE5	5,359 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	3E-18		0.271861	[0.21-0.33] unit increase	Illumina [7506463] (imputed)	N
611	chr6_cox_hap2	3414885	3414886	rs1042663	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs1042663-A	0.095	5E-18	(ER membrane protein complex subunit 4, EMC4.13516.46.3)	0.36	[0.28-0.44] unit decrease	Affymetrix [10572788] (imputed)	N
611	chr6_cox_hap2	3415765	3415766	rs9380272	20385819	Chen W	2010-04-12	Proc Natl Acad Sci U S A	Genetic variants near TIMP3 and high-density lipoprotein-associated loci influence susceptibility to age-related macular degeneration.	Age-related macular degeneration	2,157 European ancestry cases, 1,150 European ancestry controls	7,892 European ancestry cases, 5,998 European ancestry controls, 678 Japanese ancestry cases, 336 Japanese ancestry controls	6p21.33	CFB, C2	rs9380272-A	0.012	2E-8		4.31	[2.76-6.87]	Illumina [~ 2500000] (imputed)	N
611	chr6_cox_hap2	3416583	3416584	rs78593564	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PSMD11	5,350 Icelandic ancestry individuals	NA	6p21.33		rs78593564-A	0.05083	8E-12		0.281426	[0.2-0.36] unit decrease	Illumina [7506463] (imputed)	N
611	chr6_cox_hap2	3416583	3416584	rs78593564	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL36A	5,364 Icelandic ancestry individuals	NA	6p21.33		rs78593564-A	0.05083	2E-64		0.72184	[0.64-0.81] unit decrease	Illumina [7506463] (imputed)	N
611	chr6_cox_hap2	3416583	3416584	rs78593564	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL21	5,363 Icelandic ancestry individuals	NA	6p21.33		rs78593564-A	0.05083	3E-50		0.636403	[0.55-0.72] unit decrease	Illumina [7506463] (imputed)	N
611	chr6_cox_hap2	3416583	3416584	rs78593564	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	6p21.33	HLA region	rs78593564-?	NR	3E-8	(EA)			Affymetrix, Illumina [10537485] (imputed)	N
611	chr6_cox_hap2	3416583	3416584	rs78593564	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	6p21.33	HLA region	rs78593564-?	NR	1E-8				Affymetrix, Illumina [10537485] (imputed)	N
611	chr6_cox_hap2	3417592	3417593	rs2293751	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	C2, CFB	rs2293751-A	NR	2E-15		0.0227001	[0.017-0.028] unit increase	Affymetrix [321169] (imputed)	N
611	chr6_cox_hap2	3417592	3417593	rs2293751	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.33	C2, C2-AS1, CFB, DXO, EHMT2, MIR1236, NELFE, NEU1, SKIV2L, SLC44A4, STK19, ZBTB12	rs2293751-A		3E-8		1.06	[1.04-1.08]	Affymetrix, Illumina [NR]	N
611	chr6_cox_hap2	3418516	3418517	rs497239	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ZAP70	5,359 Icelandic ancestry individuals	NA	6p21.33		rs497239-C	0.09998	3E-12		0.217124	[0.16-0.28] unit increase	Illumina [7506463] (imputed)	N
611	chr6_cox_hap2	3418516	3418517	rs497239	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein KLRC3	5,354 Icelandic ancestry individuals	NA	6p21.33		rs497239-C	0.09998	1E-32		0.360834	[0.3-0.42] unit increase	Illumina [7506463] (imputed)	N
611	chr6_cox_hap2	3418516	3418517	rs497239	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ENTPD3	5,332 Icelandic ancestry individuals	NA	6p21.33		rs497239-C	0.09998	3E-13		0.205425	[0.15-0.26] unit increase	Illumina [7506463] (imputed)	N
611	chr6_cox_hap2	3420693	3420694	rs547154	32843070	Winkler TW	2020-08-26	BMC Med Genomics	Genome-wide association meta-analysis for early age-related macular degeneration highlights novel loci and insights for advanced disease.	Early age-related macular degeneration	14,034 European ancestry cases, 91,214 European ancestry controls	NA	6p21.33	C2	rs547154-G	0.91	1E-18		1.24	[1.19-1.29]	Affymetrix, Illumina [11702853] (imputed)	N
611	chr6_cox_hap2	3423779	3423780	rs4151667	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	CFB	rs4151667-A	0.042	6E-53	(Complement factor B, CFB.4129.72.1)	0.91	[0.79-1.03] unit decrease	Affymetrix [10572788] (imputed)	N
611	chr6_cox_hap2	3423934	3423935	rs12614	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CFB	5,365 Icelandic ancestry individuals	NA	6p21.33		rs12614-T	0.07594	2E-11		0.239951	[0.17-0.31] unit decrease	Illumina [7506463] (imputed)	N
611	chr6_cox_hap2	3423934	3423935	rs12614	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	CFB	rs12614-T	0.087	7E-25	(Gremlin-1, GREM1.4449.67.3)	0.44	[0.36-0.52] unit increase	Affymetrix [10572788] (imputed)	N
611	chr6_cox_hap2	3423934	3423935	rs12614	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	CFB	rs12614-T	0.087	1E-283	(Neutrophil collagenase, MMP8.2954.56.2)	1.33	[1.25-1.41] unit increase	Affymetrix [10572788] (imputed)	N
611	chr6_cox_hap2	3423934	3423935	rs12614	25802187	Jiang DK	2015-04-28	Hepatology	Genetic variants in five novel loci including CFB and CD40 predispose to chronic hepatitis B.	Chronic hepatitis B infection	2,514 Chinese ancestry cases, 1,130 Chinese ancestry controls	6,600 Chinese ancestry cases, 8,127 Chinese ancestry controls	6p21.33	CFB	rs12614-T	0.92	1E-34		1.89	[1.69-2.08]	Illumina [3680900] (imputed)	N
611	chr6_cox_hap2	3423935	3423936	rs641153	32492067	Ruffieux H	2020-06-03	PLoS Comput Biol	A fully joint Bayesian quantitative trait locus mapping of human protein abundance in plasma.	Protein quantitative trait loci	394 European ancestry individuals	548 European ancestry individuals	6p21.33	NR	rs641153-?	NR	4E-12	(Factor B)			Illumina [~ 4000000] (imputed)	N
611	chr6_cox_hap2	3423935	3423936	rs641153	22705344	Sobrin L	2012-06-15	Ophthalmology	Heritability and genome-wide association study to assess genetic differences between advanced age-related macular degeneration subtypes.	Age-related macular degeneration (geographic atrophy)	819 European ancestry geographic atrophy cases, 4,134 European ancestry controls	NA	6p21.33	CFB	rs641153-?	0.899	2E-9		2.13	[1.69-2.7]	Affymetrix, Illumina [6036699] (imputed)	N
611	chr6_cox_hap2	3423935	3423936	rs641153	22705344	Sobrin L	2012-06-15	Ophthalmology	Heritability and genome-wide association study to assess genetic differences between advanced age-related macular degeneration subtypes.	Age-related macular degeneration (choroidal neovascularisation)	1,775 European ancestry choroidal neovascularization cases, 4,134 European ancestry controls	4,515 European and unknown ancestry choroidal neovascularization cases, 15,240 European and unknown ancestry controls	6p21.33	CFB	rs641153-?	0.899	1E-17		2.22	[1.85-2.63]	Affymetrix, Illumina [6036699] (imputed)	N
611	chr6_cox_hap2	3423935	3423936	rs641153	21665990	Yu Y	2011-06-10	Hum Mol Genet	Common variants near FRK/COL10A1 and VEGFA are associated with advanced age-related macular degeneration.	Age-related macular degeneration	2,594 European ancestry cases, 4,134 European ancestry controls	5,640 European ancestry cases, 52,174 European ancestry controls	6p21.33	CFB	rs641153-?	0.90	6E-31		1.85	[NR]	Affymetrix [6036699] (imputed)	N
611	chr6_cox_hap2	3423935	3423936	rs641153	20385826	Neale BM	2010-04-12	Proc Natl Acad Sci U S A	Genome-wide association study of advanced age-related macular degeneration identifies a role of the hepatic lipase gene (LIPC).	Age-related macular degeneration	979 cases, 1,709 controls	868 European ancestry cases, 410 European ancestry controls, 4,921 cases, 3,824 controls	6p21.33	CFB, C2	rs641153-?	NR	2E-20				Affymetrix [632932]	N
611	chr6_cox_hap2	3424690	3424691	rs1048709	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CFB	5,365 Icelandic ancestry individuals	NA	6p21.33		rs1048709-A	0.2856	2E-16		0.172241	[0.13-0.21] unit decrease	Illumina [7506463] (imputed)	N
611	chr6_cox_hap2	3424690	3424691	rs1048709	31375628	Tengvall K	2019-08-02	Proc Natl Acad Sci U S A	Molecular mimicry between Anoctamin 2 and Epstein-Barr virus nuclear antigen 1 associates with multiple sclerosis risk.	Anti-anoctamin 2 antibody levels	11,936 European ancestry individuals	NA	6p21.33	NR	rs1048709-A	NR	3E-7		0.054	[0.029-0.079] unit increase	Illumina [615763]	N
611	chr6_cox_hap2	3424899	3424900	rs4151669	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	DXO, C2, CFB, EHMT2, SLC44A4, EHMT2-AS1, ZBTB12, XXbac-BPG116M5.17, C2-AS1, NELFE, MIR1236, STK19, C4A	rs4151669-A	0.04112337	6E-28	(EA, Complement factor B)	1.17	[0.97-1.37] unit decrease	Affymetrix [509946]	N
611	chr6_cox_hap2	3426155	3426156	rs537160	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p21.33	NR	rs537160-G	0.6394	3E-7		0.0063	[0.0039-0.0087] unit increase	NR [7666894] (imputed)	N
611	chr6_cox_hap2	3426155	3426156	rs537160	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.33	XXbac-BPG116M5.17, CFB	rs537160-A	0.3352	9E-11		0.0478	[0.033-0.062] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
611	chr6_cox_hap2	3426462	3426463	rs45600936	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	6p21.33	CFB	rs45600936-T	0.00839800000000002	4E-10		0.07604781	[0.052-0.1] unit decrease	Affymetrix [93095623] (imputed)	N
611	chr6_cox_hap2	3426706	3426707	rs541862	29234017	Carayol J	2017-12-12	Nat Commun	Protein quantitative trait locus study in obesity during weight-loss identifies a leptin regulator.	Protein levels in obesity	494 European ancestry individuals	NA	6p21.33	NR	rs541862-?	NR	3E-11	(Factor B)	0.15	[0.1-0.2] unit increase	Illumina [4020654] (imputed)	N
611	chr6_cox_hap2	3426706	3426707	rs541862	22694956	Cipriani V	2012-06-13	Hum Mol Genet	Genome-wide association study of age-related macular degeneration identifies associated variants in the TNXB-FKBPL-NOTCH4 region of chromosome 6p21.3.	Age-related macular degeneration	893 European ancestry cases, 2,199 European ancestry controls	1,411 European ancestry cases, 1,431 European ancestry controls	6p21.33	CFB	rs541862-T	0.99	9E-17		1.89	[1.61-2.17]	Illumina [2272849] (imputed)	N
611	chr6_cox_hap2	3427295	3427296	rs4151657	24837172	Juyal G	2014-05-16	Gut	Genome-wide association scan in north Indians reveals three novel HLA-independent risk loci for ulcerative colitis.	Ulcerative colitis	603 North Indian ancestry cases, 622 North Indian ancestry controls	733 North Indian ancestry cases, 1,148 North Indian ancestry controls	6p21.33	CFB, BAT2, MSH5, HSPA1L, SLC44A4	rs4151657-G	0.29	5E-14		1.54	[1.38-1.73]	Illumina [480391]	N
611	chr6_cox_hap2	3428219	3428220	rs4151659	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	CFB	rs4151659-G	0.013	2E-18	(ER membrane protein complex subunit 4, EMC4.13516.46.3)	0.94	[0.72-1.16] unit decrease	Affymetrix [10572788] (imputed)	N
611	chr6_cox_hap2	3428615	3428616	rs1270942	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	2,018 European ancestry cases, 6,925 European ancestry controls	6p21.33	MHC class III	rs1270942-C		2E-165		2.28	[2.15-2.42]	Illumina [644674]	N
611	chr6_cox_hap2	3428615	3428616	rs1270942	25936594	Tomer Y	2015-04-27	J Autoimmun	Genome wide identification of new genes and pathways in patients with both autoimmune thyroiditis and type 1 diabetes.	Type 1 diabetes and autoimmune thyroid diseases	346 European ancestry cases, 727 European ancestry controls	185 European ancestry cases, 340 European ancestry controls	6p21.33	BAT2, HSPA1L, CFB, TNXB, NOTCH4	rs1270942-C	NR	5E-25		3.0494		Illumina [514008]	N
611	chr6_cox_hap2	3428658	3428659	rs4151671	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		AL645922.1	rs4151671-?	NR	2E-8	(male)	2.99493	[NR] unit decrease	Affymetrix [NR] (imputed)	N
611	chr6_cox_hap2	3428658	3428659	rs4151671	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA		NR	rs4151671-C	0.94890625	7E-10	(IFNAR1, 6055_53_3)	0.3487593	[0.24-0.46] unit increase	Illumina [> 1000000] (imputed)	N
611	chr6_cox_hap2	3428658	3428659	rs4151671	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA		NR	rs4151671-C	0.94890625	6E-23	(FTMT, 8048_9_3)	0.5590734	[0.45-0.67] unit decrease	Illumina [> 1000000] (imputed)	N
611	chr6_cox_hap2	3428658	3428659	rs4151671	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA		NR	rs4151671-C	0.94890625	2E-49	(ISG15, 14148_2_3)	0.84025466	[0.73-0.95] unit increase	Illumina [> 1000000] (imputed)	N
611	chr6_cox_hap2	3428658	3428659	rs4151671	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA		NR	rs4151671-C	0.94890625	2E-23	(DEFB119, 13455_10_3)	0.5583053	[0.45-0.67] unit decrease	Illumina [> 1000000] (imputed)	N
611	chr6_cox_hap2	3428658	3428659	rs4151671	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA		NR	rs4151671-C	0.94890625	2E-14	(MICA, 2730_58_2)	0.4376745	[0.33-0.55] unit increase	Illumina [> 1000000] (imputed)	N
611	chr6_cox_hap2	3428658	3428659	rs4151671	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA		NR	rs4151671-C	0.94890625	2E-126	(TNXB, 5698_60_3)	1.3120593	[1.21-1.41] unit increase	Illumina [> 1000000] (imputed)	N
611	chr6_cox_hap2	3428658	3428659	rs4151671	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA		NR	rs4151671-C	0.94890625	1E-9	(IL15, 10795_32_3)	0.34537017	[0.23-0.46] unit increase	Illumina [> 1000000] (imputed)	N
611	chr6_cox_hap2	3428658	3428659	rs4151671	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA		NR	rs4151671-C	0.94890625	1E-66	(CFB, 4129_72_1)	0.96344995	[0.86-1.07] unit increase	Illumina [> 1000000] (imputed)	N
611	chr6_cox_hap2	3428658	3428659	rs4151671	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA		NR	rs4151671-C	0.94890625	1E-41	(C2, 3186_2_2)	0.78192717	[0.67-0.89] unit increase	Illumina [> 1000000] (imputed)	N
611	chr6_cox_hap2	3429333	3429334	rs2072633	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	CFB	rs2072633-A	NR	2E-10		0.0180815	[0.013-0.024] unit decrease	Affymetrix [321169] (imputed)	N
611	chr6_cox_hap2	3429333	3429334	rs2072633	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	6p21.33	C2, CFB, MIR1236, NELFE, SKIV2L	rs2072633-A	0.443	6E-13		0.0411	[0.03-0.052] unit decrease	NR [8041861] (imputed)	N
611	chr6_cox_hap2	3429585	3429586	rs4151672	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		CFB	rs4151672-?	NR	2E-8	(male)	2.99497	[NR] unit decrease	Affymetrix [NR] (imputed)	N
611	chr6_cox_hap2	3429672	3429673	rs522162	23577725	Naj AC	2013-05-01	Ann Hum Genet	Genetic factors in nonsmokers with age-related macular degeneration revealed through genome-wide gene-environment interaction analysis.	Age-related macular degeneration (extreme sampling)	720 European ancestry grade 5 cases, 513 European ancestry grade 1 controls	70 European ancestry grade 5 cases, 73 European ancestry grade 1 controls	6p21.33	RDBP, CFB, DKFZp779M0311	rs522162-?	0.93	3E-7		2.38	[1.69-3.33]	Affymetrix [2543887] (imputed)	N
611	chr6_cox_hap2	3429672	3429673	rs522162	23577725	Naj AC	2013-05-01	Ann Hum Genet	Genetic factors in nonsmokers with age-related macular degeneration revealed through genome-wide gene-environment interaction analysis.	Age-related macular degeneration	1,207 European ancestry cases, 686 European ancestry controls	122 European ancestry cases, 86 European ancestry controls	6p21.33	RDBP, CFB, ATF6B, STK19	rs522162-?	0.93	2E-10		2.33	[1.82-3.03]	Affymetrix [2543887] (imputed)	N
611	chr6_cox_hap2	3430442	3430443	rs550513	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	SKIV2L, CFB, NELFE, C2, C2-AS1, XXbac-BPG116M5.17, MIR1236	rs550513-T	0.07981928	1E-19	(Complement factor B)	0.702	[0.55-0.85] unit increase	Affymetrix [509946]	N
611	chr6_cox_hap2	3430821	3430822	rs4151665	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs4151665-C	0.06	7E-15	(Beta-defensin 119, DEFB119.13455.10.3)	0.4	[0.3-0.5] unit increase	Affymetrix [10572788] (imputed)	N
611	chr6_cox_hap2	3431230	3431231	rs2072632	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SPAG11B	5,366 Icelandic ancestry individuals	NA	6p21.33		rs2072632-A	0.2866	3E-45		0.290078	[0.25-0.33] unit decrease	Illumina [7506463] (imputed)	N
611	chr6_cox_hap2	3432009	3432010	rs630379	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	NELFE	rs630379-A	NR	1E-14		0.0231756	[0.017-0.029] unit decrease	Affymetrix [319769] (imputed)	N
611	chr6_cox_hap2	3432009	3432010	rs630379	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	NELFE	rs630379-A	NR	2E-13		0.0221378	[0.016-0.028] unit decrease	Affymetrix [319769] (imputed)	N
611	chr6_cox_hap2	3432009	3432010	rs630379	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	NELFE	rs630379-A	NR	2E-23		0.0325922	[0.026-0.039] unit increase	Affymetrix [323123] (imputed)	N
611	chr6_cox_hap2	3432009	3432010	rs630379	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	NELFE	rs630379-A	NR	5E-17		0.0254771	[0.02-0.031] unit decrease	Affymetrix [321169] (imputed)	N
611	chr6_cox_hap2	3433469	3433469	rs35917342	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs35917342-AT	0.101	1E-203	(Neutrophil collagenase, MMP8.2954.56.2)	1.18	[1.1-1.26] unit increase	Affymetrix [10572788] (imputed)	N
611	chr6_cox_hap2	3434082	3434083	rs9501161	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs9501161-A	0.086	1E-11	(Complement factor B, CFB.4129.72.1)	0.29	[0.21-0.37] unit decrease	Affymetrix [10572788] (imputed)	N
611	chr6_cox_hap2	3435603	3435604	rs80082277	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	6p21.33	SKIV2L, NELFE, MIR1236	rs80082277-C	0.02	3E-8	(EA)	0.0536	[0.035-0.073] unit decrease	Affymetrix, Illumina [10537485] (imputed)	N
611	chr6_cox_hap2	3437097	3437098	rs440454	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	6p21.33		rs440454-?	NR	5E-9		0.0056767	[0.0038-0.0076] unit decrease	NR [NR]	N
611	chr6_cox_hap2	3437097	3437098	rs440454	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p21.33	SKIV2L	rs440454-A	NR	2E-10		0.0210807	[0.015-0.028] unit decrease	Affymetrix [323858] (imputed)	N
611	chr6_cox_hap2	3438446	3438447	rs2280774	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	CYP21A2, NELFE, DXO, TNXB, C2, C2-AS1, XXbac-BPG116M5.17, CFB, MIR1236, SKIV2L, STK19, C4A, C4B, C4B-AS1, RNA5SP206	rs2280774-A	0.3705942	8E-29	(Complement C4b)	0.5048	[0.42-0.59] unit decrease	Affymetrix [509946]	N
611	chr6_cox_hap2	3438446	3438447	rs2280774	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	CYP21A2, NELFE, DXO, TNXB, C2, C2-AS1, XXbac-BPG116M5.17, CFB, MIR1236, SKIV2L, STK19, C4A, C4B, C4B-AS1, RNA5SP206	rs2280774-A	0.3705942	8E-12	(EA, gp41 C34 peptide, HIV)	0.3064	[0.22-0.39] unit decrease	Affymetrix [509946]	N
611	chr6_cox_hap2	3438554	3438555	rs419788	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	SKIV2L	rs419788-T	NR	3E-19		0.0298384	[0.023-0.036] unit decrease	Affymetrix [323858] (imputed)	N
611	chr6_cox_hap2	3438554	3438555	rs419788	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	SKIV2L	rs419788-T	NR	1E-16		0.0274934	[0.021-0.034] unit decrease	Affymetrix [127266] (imputed)	N
611	chr6_cox_hap2	3439563	3439564	rs35664695	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p21.33	NR	rs35664695-?	NR	6E-17		0.1764	[0.14-0.22] unit increase	Illumina [at least 560000] (imputed)	N
611	chr6_cox_hap2	3440106	3440107	rs2734331	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	6p21.33	SKIV2L	rs2734331-A	0.97	7E-13	(X-11470)	0.073	[0.053-0.093] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
611	chr6_cox_hap2	3440196	3440197	rs592229	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	6p21.33		rs592229-G	0.486	2E-28		0.12	[0.1-0.14] % increase	Affymetrix [NR] (imputed)	N
611	chr6_cox_hap2	3440196	3440197	rs592229	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	SKIV2L	rs592229-G	NR	3E-9		0.0166622	[0.011-0.022] unit decrease	Affymetrix [319769] (imputed)	N
611	chr6_cox_hap2	3440196	3440197	rs592229	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	SKIV2L	rs592229-G	NR	6E-18		0.0269889	[0.021-0.033] unit decrease	Affymetrix [323858] (imputed)	N
611	chr6_cox_hap2	3440196	3440197	rs592229	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	SKIV2L	rs592229-G	NR	2E-8		0.0157493	[0.01-0.021] unit decrease	Affymetrix [319769] (imputed)	N
611	chr6_cox_hap2	3440196	3440197	rs592229	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	SKIV2L	rs592229-G	NR	1E-15		0.0250227	[0.019-0.031] unit decrease	Affymetrix [127266] (imputed)	N
611	chr6_cox_hap2	3440196	3440197	rs592229	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	SKIV2L	rs592229-G	NR	5E-15		0.023966	[0.018-0.03] unit increase	Affymetrix [323123] (imputed)	N
611	chr6_cox_hap2	3440196	3440197	rs592229	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p21.33	SKIV2L	rs592229-G	NR	5E-12		0.0214232	[0.015-0.027] unit decrease	Affymetrix [323858] (imputed)	N
611	chr6_cox_hap2	3440196	3440197	rs592229	25281659	van der Valk RJ	2014-10-03	Hum Mol Genet	A novel common variant in DCST2 is associated with length in early life and height in adulthood.	Infant length	28,238 European ancestry individuals	NA	6p21.33	HLA	rs592229-G	0.43	2E-8		0.048	[0.030-0.066] unit increase	Affymetrix, Illumina [2193675] (imputed)	N
611	chr6_cox_hap2	3440196	3440197	rs592229	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs592229-G	0.370399655280899	4E-6	(IGP42)	0.1536	[0.088-0.219] unit increase	Illumina [~ 2500000] (imputed)	N
611	chr6_cox_hap2	3440196	3440197	rs592229	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs592229-G	0.370283129554656	9E-6	(IGP2)	0.1479	[0.083-0.213] unit increase	Illumina [~ 2500000] (imputed)	N
611	chr6_cox_hap2	3440217	3440218	rs429608	23455636	Fritsche LG	2013-03-03	Nat Genet	Seven new loci associated with age-related macular degeneration.	Age-related macular degeneration	6,713 European ancestry cases, 48,402 European ancestry contols, 110 Southern Indian ancestry cases, 119 Southern Indian ancestry controls, 827 Japanese ancestry cases, 3,323 Japanese ancestry controls	9,070 European ancestry cases, 7,683 European ancestry contols, 461 East Asian ancestry cases, 547 East Asian ancestry controls	6p21.33	CFB, C2	rs429608-G	0.86	4E-89		1.74	[1.68-1.79]	Affymetrix, Illumina [2442884] (imputed)	N
611	chr6_cox_hap2	3440217	3440218	rs429608	20861866	Kopplin LJ	2010-09-23	Genes Immun	Genome-wide association identifies SKIV2L and MYRIP as protective factors for age-related macular degeneration.	Age-related macular degeneration	684 European ancestry cases, 188 European ancestry controls	1,896 European ancestry cases, 1,866 European ancestry controls	6p21.33	BF, SKIV2L	rs429608-?	NR	5E-15		1.85	[NR]	Affymetrix [> 361556] (imputed)	N
611	chr6_cox_hap2	3440217	3440218	rs429608	20385819	Chen W	2010-04-12	Proc Natl Acad Sci U S A	Genetic variants near TIMP3 and high-density lipoprotein-associated loci influence susceptibility to age-related macular degeneration.	Age-related macular degeneration	2,157 European ancestry cases, 1,150 European ancestry controls	7,892 European ancestry cases, 5,998 European ancestry controls, 678 Japanese ancestry cases, 336 Japanese ancestry controls	6p21.33	CFB, C2	rs429608-G	0.842	3E-21		2.16	[1.84-2.53]	Illumina [~ 2500000] (imputed)	N
611	chr6_cox_hap2	3440892	3440893	rs401775	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p21.33	NR	rs401775-?	NR	3E-12		0.1102	[0.079-0.141] unit increase	Illumina [at least 560000] (imputed)	N
611	chr6_cox_hap2	3442916	3442917	rs406936	23577725	Naj AC	2013-05-01	Ann Hum Genet	Genetic factors in nonsmokers with age-related macular degeneration revealed through genome-wide gene-environment interaction analysis.	Age-related macular degeneration	1,207 European ancestry cases, 686 European ancestry controls	122 European ancestry cases, 86 European ancestry controls	6p21.33	SKIV2L	rs406936-?	0.10	7E-7		1.75	[1.41-2.17]	Affymetrix [2543887] (imputed)	N
611	chr6_cox_hap2	3443273	3443274	rs492899	31241743	Jaeger M	2019-04-24	J Infect Dis	A Genome-Wide Functional Genomics Approach Identifies Susceptibility Pathways to Fungal Bloodstream Infection in Humans.	Candidemia	161 European ancestry cases, 152 European ancestry controls	NA	6p21.33	NR	rs492899-?	NR	2E-6		5.5555553	[NR]	Illumina [5326313] (imputed)	N
611	chr6_cox_hap2	3443273	3443274	rs492899	30854688	Wang C	2019-03-10	Hepatology	Genome Wide Association Studies of Specific Antinuclear Autoantibody Sub-phenotypes in Primary Biliary Cholangitis.	Anti-sp100 seropositivity in primary biliary cholangitis	211 Han Chinese ancestry cases, 711 Han Chinese ancestry controls	234 Han Chinese ancestry cases, 1,018 Han Chinese ancestry controls	6p21.33	NR	rs492899-G	0.193	3E-22		2.9	[2.34-3.66]	Illumina [794531]	N
611	chr6_cox_hap2	3443732	3443733	rs9296004	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TYK2	5,361 Icelandic ancestry individuals	NA	6p21.33		rs9296004-C	0.09963	6E-11		0.203156	[0.14-0.26] unit increase	Illumina [7506463] (imputed)	N
611	chr6_cox_hap2	3443732	3443733	rs9296004	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LDLRAD4	5,362 Icelandic ancestry individuals	NA	6p21.33		rs9296004-C	0.09963	7E-11		0.200339	[0.14-0.26] unit increase	Illumina [7506463] (imputed)	N
611	chr6_cox_hap2	3443732	3443733	rs9296004	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ISG15	5,349 Icelandic ancestry individuals	NA	6p21.33		rs9296004-C	0.09963	8E-62		0.488305	[0.43-0.55] unit decrease	Illumina [7506463] (imputed)	N
611	chr6_cox_hap2	3443732	3443733	rs9296004	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL18RAP	5,360 Icelandic ancestry individuals	NA	6p21.33		rs9296004-C	0.09963	6E-30		0.350014	[0.29-0.41] unit decrease	Illumina [7506463] (imputed)	N
611	chr6_cox_hap2	3443732	3443733	rs9296004	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FTMT	5,365 Icelandic ancestry individuals	NA	6p21.33		rs9296004-C	0.09963	4E-81		0.580682	[0.52-0.64] unit increase	Illumina [7506463] (imputed)	N
611	chr6_cox_hap2	3443732	3443733	rs9296004	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DEFB119	5,366 Icelandic ancestry individuals	NA	6p21.33		rs9296004-C	0.09963	3E-94		0.623132	[0.56-0.68] unit increase	Illumina [7506463] (imputed)	N
611	chr6_cox_hap2	3443732	3443733	rs9296004	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C4A;C4B	5,353 Icelandic ancestry individuals	NA	6p21.33		rs9296004-C	0.09963	1E-39		0.393378	[0.33-0.45] unit increase	Illumina [7506463] (imputed)	N
611	chr6_cox_hap2	3443732	3443733	rs9296004	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	SKIV2L	rs9296004-C	0.082	3E-40	(Beta-defensin 119, DEFB119.13455.10.3)	0.61	[0.51-0.71] unit increase	Affymetrix [10572788] (imputed)	N
611	chr6_cox_hap2	3445322	3445323	rs3911893	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DEFB119	5,366 Icelandic ancestry individuals	NA	6p21.33		rs3911893-A	0.0572	2E-35		0.507255	[0.43-0.59] unit increase	Illumina [7506463] (imputed)	N
611	chr6_cox_hap2	3445505	3445506	rs106287	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	6p21.33	SKIV2L	rs106287-A	0.0424830000000001	8E-12		0.03863092	[0.028-0.05] unit decrease	Affymetrix [93095623] (imputed)	N
611	chr6_cox_hap2	3445812	3445813	rs34241101	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6p21.33	NR	rs34241101-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
611	chr6_cox_hap2	3445812	3445813	rs34241101	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Strep throat	52,487 European ancestry cases, 22,017 European ancestry controls	NA	6p21.33	NR	rs34241101-?	NR	2E-7		0.0548	[0.034-0.076] unit increase	Illumina [at least 560000] (imputed)	N
611	chr6_cox_hap2	3446423	3446424	rs410851	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	6p21.33		rs410851-C	NR	1E-16		0.0169	[0.013-0.021] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
611	chr6_cox_hap2	3446423	3446424	rs410851	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	6p21.33		rs410851-C	NR	3E-21		0.02	[0.016-0.024] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
611	chr6_cox_hap2	3446423	3446424	rs410851	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	SKIV2L	rs410851-T	NR	5E-12		0.0206765	[0.015-0.027] unit increase	Affymetrix [321016] (imputed)	N
611	chr6_cox_hap2	3447875	3447876	rs45531831	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	TNXB	rs45531831-T	0.023	3E-116	(Tenascin-X, TNXB.5698.60.3)	1.75	[1.59-1.91] unit decrease	Affymetrix [10572788] (imputed)	N
611	chr6_cox_hap2	3449100	3449101	rs41267118	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL18RAP	5,360 Icelandic ancestry individuals	NA	6p21.33		rs41267118-A	0.04712	9E-9		0.259513	[0.17-0.35] unit decrease	Illumina [7506463] (imputed)	N
611	chr6_cox_hap2	3449279	3449280	rs115085021	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CFB	5,365 Icelandic ancestry individuals	NA	6p21.33		rs115085021-C	0.03863	6E-25		0.502999	[0.41-0.6] unit increase	Illumina [7506463] (imputed)	N
611	chr6_cox_hap2	3449973	3449974	rs75393409	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs75393409-?		2E-7		1.06	[1.04-1.09]	Illumina [7645193] (imputed)	N
611	chr6_cox_hap2	3449973	3449974	rs75393409	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs75393409-?		4E-8		1.78	[1.45-2.18]	Illumina [7645193] (imputed)	N
611	chr6_cox_hap2	3450652	3450653	rs389884	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FTMT	5,365 Icelandic ancestry individuals	NA	6p21.33		rs389884-G	0.08177	6E-137		0.828667	[0.76-0.89] unit decrease	Illumina [7506463] (imputed)	N
611	chr6_cox_hap2	3450652	3450653	rs389884	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p21.33	STK19	rs389884-G	0.342	1E-32				Illumina [118177]	N
611	chr6_cox_hap2	3450652	3450653	rs389884	23263863	Li J	2012-12-20	Hum Mol Genet	GWAS of blood cell traits identifies novel associated loci and epistatic interactions in Caucasian and African-American children.	Hematology traits	7,943 African American children, 6,234 European ancestry children	NA	6p21.33	CFB, STK19, ZBTB12	rs389884-C	0.0953	2E-8	(EA, WBC)	0.0254	[0.017-0.034] unit decrease	Illumina [544917]	N
611	chr6_cox_hap2	3450652	3450653	rs389884	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.33	intergenic	rs389884-C	0.1148	8E-66		3.65	[NR]	Illumina [242824]	N
611	chr6_cox_hap2	3451312	3451313	rs387608	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SIGLEC8	5,359 Icelandic ancestry individuals	NA	6p21.33		rs387608-A	0.1429	6E-12		0.181754	[0.13-0.23] unit increase	Illumina [7506463] (imputed)	N
611	chr6_cox_hap2	3451312	3451313	rs387608	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PCDHGB4	5,352 Icelandic ancestry individuals	NA	6p21.33		rs387608-A	0.1429	2E-12		0.184372	[0.13-0.24] unit increase	Illumina [7506463] (imputed)	N
611	chr6_cox_hap2	3451312	3451313	rs387608	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein OSM	5,348 Icelandic ancestry individuals	NA	6p21.33		rs387608-A	0.1429	4E-12		0.174055	[0.12-0.22] unit increase	Illumina [7506463] (imputed)	N
611	chr6_cox_hap2	3451312	3451313	rs387608	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DES	5,344 Icelandic ancestry individuals	NA	6p21.33		rs387608-A	0.1429	5E-14		0.190553	[0.14-0.24] unit increase	Illumina [7506463] (imputed)	N
611	chr6_cox_hap2	3451312	3451313	rs387608	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CFP	5,352 Icelandic ancestry individuals	NA	6p21.33		rs387608-A	0.1429	1E-15		0.207744	[0.16-0.26] unit decrease	Illumina [7506463] (imputed)	N
611	chr6_cox_hap2	3451312	3451313	rs387608	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	SKIV2L, C4B, TNXB, DXO, STK19, C4A, C4A-AS1, CYP21A1P, TNXA, AL645922.1, STK19B, CYP21A2, C4B-AS1	rs387608-A	0.1214859	3E-25	(gp41 C34 peptide, HIV)	0.6703	[0.55-0.79] unit increase	Affymetrix [509946]	N
611	chr6_cox_hap2	3451384	3451385	rs116420479	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	6p21.33	HLA region	rs116420479-?	NR	3E-8	(EA)			Affymetrix, Illumina [10537485] (imputed)	N
611	chr6_cox_hap2	3451384	3451385	rs116420479	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	6p21.33	HLA region	rs116420479-?	NR	1E-8				Affymetrix, Illumina [10537485] (imputed)	N
611	chr6_cox_hap2	3452987	3452988	rs41315812	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein USP25	5,360 Icelandic ancestry individuals	NA	6p21.33		rs41315812-T	0.0381	4E-157		1.22583	[1.14-1.32] unit increase	Illumina [7506463] (imputed)	N
611	chr6_cox_hap2	3453791	3453792	rs1738434	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.33		rs1738434-G	0.595	1E-62				Affymetrix [10369434] (imputed)	N
611	chr6_cox_hap2	3453791	3453792	rs1738434	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	STK19	rs1738434-T	NR	7E-11		0.0207324	[0.014-0.027] unit increase	Affymetrix [323858] (imputed)	N
611	chr6_cox_hap2	3453791	3453792	rs1738434	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	STK19	rs1738434-T	NR	3E-9		0.0189414	[0.013-0.025] unit increase	Affymetrix [127266] (imputed)	N
611	chr6_cox_hap2	3453791	3453792	rs1738434	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	STK19	rs1738434-T	NR	2E-10		0.0197638	[0.014-0.026] unit decrease	Affymetrix [323123] (imputed)	N
611	chr6_cox_hap2	3453791	3453792	rs1738434	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p21.33	STK19	rs1738434-T	NR	4E-9		0.0185989	[0.012-0.025] unit increase	Affymetrix [323858] (imputed)	N
611	chr6_cox_hap2	3453791	3453792	rs1738434	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	STK19	rs1738434-T	0.412	4E-34	(Trypsin-3, PRSS3.3479.71.2)	0.3	[0.26-0.34] unit decrease	Affymetrix [10572788] (imputed)	N
611	chr6_cox_hap2	3454985	3454986	rs12524149	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs12524149-C	0.677	9E-49				Affymetrix [10369434] (imputed)	N
611	chr6_cox_hap2	3455401	3455402	rs2734325	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	6p21.33	STK19	rs2734325-T	NR	3E-7	(EA)	1.0615711	[1.04-1.08]	Illumina [6627481] (imputed)	N
611	chr6_cox_hap2	3456369	3456370	rs6941112	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	STK19	rs6941112-A	NR	3E-9		0.019993	[0.013-0.027] unit decrease	Affymetrix [323123] (imputed)	N
611	chr6_cox_hap2	3456369	3456370	rs6941112	34011352	Schwarm C	2021-05-19	Orphanet J Rare Dis	Identification of two novel bullous pemphigoid- associated alleles, HLA-DQA1*05:05 and -DRB1*07:01, in Germans.	Bullous pemphigoid	438 German cases, 417 German controls	NA	6p21.33	STK19	rs6941112-?	NR	7E-6		0.498031	[0.28-0.71] unit increase	Affymetrix [up to 386296] (imputed)	N
611	chr6_cox_hap2	3456369	3456370	rs6941112	31972866	Nagel M	2020-01-23	Acta Psychiatr Scand	Genome-wide association study of the sensitivity to environmental stress and adversity (SESA) neuroticism cluster.	Sensitivity to environmental stress and adversity	351,827 European ancestry individuals	NA	6p21.33	NR	rs6941112-A	NR	6E-12		0.01765	NR unit increase	NR [7259579]	N
611	chr6_cox_hap2	3456729	3456730	rs77143442	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs77143442-C	0.023	3E-27	(Interleukin-21, IL21.7124.18.3)	0.9	[0.74-1.06] unit decrease	Affymetrix [10572788] (imputed)	N
611	chr6_cox_hap2	3456782	3456783	rs181705462	26691988	Fritsche LG	2015-12-21	Nat Genet	A large genome-wide association study of age-related macular degeneration highlights contributions of rare and common variants.	Advanced age-related macular degeneration	16,144 European ancestry cases, 17,832 European ancestry controls	473 Asian ancestry cases, 1,099 Asian ancestry controls, 52 African ancestry cases, 361 African ancestry cases, 254 other non-European ancestry cases, 694 other non-European ancestry controls	6p21.33	C2, CFB, SKIV2L	rs181705462-?	NR	3E-10	(EA)	1.55		Illumina [12023830] (imputed)	N
611	chr6_cox_hap2	3457215	3457216	rs389883	30626913	Amare AT	2019-01-09	Mol Psychiatry	Bivariate genome-wide association analyses of the broad depression phenotype combined with major depressive disorder, bipolar disorder or schizophrenia reveal eight novel genetic loci for depression.	Broad depression or schizophrenia	9,240 European ancestry broad depression cases, 9,519 European ancestry broad depression controls, 51,258 European ancestry individuals, 36,989 European and East Asian ancestry schizophrenia cases, 113,075 European and East Asian ancestry schizophrenia controls	322,580 individuals	6p21.33	STK19	rs389883-T	0.68	1E-12				Affymetrix, Illumina [at least 918921] (imputed)	N
611	chr6_cox_hap2	3457672	3457673	rs114632474	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		STK19	rs114632474-?	NR	3E-10		1.8011	[NR] unit decrease	Affymetrix [NR] (imputed)	N
611	chr6_cox_hap2	3465373	3465374	rs200283861	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.33	NR	rs200283861-A	0.277	3E-23		1.203	[1.17-1.24]	Illumina [11270530] (imputed)	N
611	chr6_cox_hap2	3465432	3465433	rs451637	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs451637-T	0.308	2E-22	(Beta-defensin 119, DEFB119.13455.10.3)	0.28	[0.22-0.34] unit decrease	Affymetrix [10572788] (imputed)	N
611	chr6_cox_hap2	3467174	3467175	rs406658	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LDLRAD4	5,362 Icelandic ancestry individuals	NA	6p21.33		rs406658-A	0.1189	3E-18		0.250928	[0.19-0.31] unit increase	Illumina [7506463] (imputed)	N
611	chr6_cox_hap2	3467174	3467175	rs406658	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HNF4A	5,363 Icelandic ancestry individuals	NA	6p21.33		rs406658-A	0.1189	5E-14		0.217282	[0.16-0.27] unit increase	Illumina [7506463] (imputed)	N
611	chr6_cox_hap2	3467174	3467175	rs406658	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6p21.33	C4B	rs406658-A	0.110604	2E-10		0.024302784	[0.017-0.032] unit increase	Affymetrix [93095623] (imputed)	N
611	chr6_cox_hap2	3467174	3467175	rs406658	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	C4A, C4B	rs406658-A	0.119	3E-52	(Complement C4, C4A.C4B.4481.34.2)	0.56	[0.48-0.64] unit increase	Affymetrix [10572788] (imputed)	N
611	chr6_cox_hap2	3475917	3475918	rs431204	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p21.33	NR	rs431204-?	NR	1E-6		4.868	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
611	chr6_cox_hap2	3475954	3475955	rs4713496	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.33		rs4713496-A	0.981	1E-36				Affymetrix [10369434] (imputed)	N
611	chr6_cox_hap2	3475954	3475955	rs4713496	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs4713496-A	0.981	3E-36				Affymetrix [10369434] (imputed)	N
611	chr6_cox_hap2	3476005	3476006	rs113720465	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.33	NR	rs113720465-A	0.052	6E-30	(conditional)	0.447	[0.31-0.59]	Illumina [11270530] (imputed)	N
611	chr6_cox_hap2	3476299	3476300	rs396458	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein UBC	5,349 Icelandic ancestry individuals	NA	6p21.33		rs396458-G	0.1452	4E-20		0.229839	[0.18-0.28] unit increase	Illumina [7506463] (imputed)	N
611	chr6_cox_hap2	3476299	3476300	rs396458	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TRIL	5,360 Icelandic ancestry individuals	NA	6p21.33		rs396458-G	0.1452	7E-12		0.183406	[0.13-0.24] unit increase	Illumina [7506463] (imputed)	N
611	chr6_cox_hap2	3476299	3476300	rs396458	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LAYN	5,339 Icelandic ancestry individuals	NA	6p21.33		rs396458-G	0.1452	3E-15		0.189442	[0.14-0.24] unit increase	Illumina [7506463] (imputed)	N
611	chr6_cox_hap2	3476299	3476300	rs396458	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL34	5,345 Icelandic ancestry individuals	NA	6p21.33		rs396458-G	0.1452	4E-20		0.227625	[0.18-0.28] unit increase	Illumina [7506463] (imputed)	N
611	chr6_cox_hap2	3476299	3476300	rs396458	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GCNT4	5,342 Icelandic ancestry individuals	NA	6p21.33		rs396458-G	0.1452	3E-12		0.175139	[0.13-0.22] unit increase	Illumina [7506463] (imputed)	N
611	chr6_cox_hap2	3477247	3477248	rs6462	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	CYP21A2	rs6462-C	NR	2E-9		0.0206131	[0.014-0.027] unit increase	Affymetrix [323123] (imputed)	N
611	chr6_cox_hap2	3477536	3477537	rs6474	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	CYP21A2	rs6474-A	NR	4E-9		0.0198676	[0.013-0.026] unit increase	Affymetrix [323858] (imputed)	N
611	chr6_cox_hap2	3477546	3477547	rs6455	26385043	Kertai MD	2015-06-17	Am Heart J	Genome-wide association study of new-onset atrial fibrillation after coronary artery bypass grafting surgery.	Postoperative atrial fibrillation in coronary artery bypass grafting surgery	620 European ancestry cases, 257 European ancestry controls	220 cases, 84 controls	6p21.33	CYP21A2	rs6455-G	0.015	3E-6		1.96	[0.51-7.58]	Illumina [524975]	N
611	chr6_cox_hap2	3477713	3477714	rs6466	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Scarlet fever	6,812 European ancestry cases, 113,837 European ancestry controls	NA	6p21.33	NR	rs6466-?	NR	3E-6		0.0939	[0.055-0.133] unit increase	Illumina [at least 560000] (imputed)	N
611	chr6_cox_hap2	3478274	3478275	rs6458	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TMEM52B	5,359 Icelandic ancestry individuals	NA	6p21.33		rs6458-G	0.119	2E-13		0.212277	[0.16-0.27] unit increase	Illumina [7506463] (imputed)	N
611	chr6_cox_hap2	3478274	3478275	rs6458	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ISG15	5,349 Icelandic ancestry individuals	NA	6p21.33		rs6458-G	0.119	8E-28		0.307651	[0.25-0.36] unit decrease	Illumina [7506463] (imputed)	N
611	chr6_cox_hap2	3478274	3478275	rs6458	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ERP29	5,363 Icelandic ancestry individuals	NA	6p21.33		rs6458-G	0.119	1E-12		0.209088	[0.15-0.27] unit increase	Illumina [7506463] (imputed)	N
611	chr6_cox_hap2	3478274	3478275	rs6458	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CMPK1	5,365 Icelandic ancestry individuals	NA	6p21.33		rs6458-G	0.119	6E-14		0.220731	[0.16-0.28] unit increase	Illumina [7506463] (imputed)	N
611	chr6_cox_hap2	3478274	3478275	rs6458	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C4A;C4B	5,362 Icelandic ancestry individuals	NA	6p21.33		rs6458-G	0.119	8E-56		0.450845	[0.39-0.51] unit increase	Illumina [7506463] (imputed)	N
611	chr6_cox_hap2	3478275	3478276	rs6459	33941608	Khan A	2021-05-03	J Am Soc Nephrol	Medical Records-Based Genetic Studies of the Complement System.	Complement C4 levels	3,247 European ancestry individuals, 600 African ancestry individuals, 151 East Asian ancestry individuals	NA	6p21.33	C4	rs6459-T	0.12	8E-29		0.38	[0.32-0.43] unit increase	NR [NR] (imputed)	N
611	chr6_cox_hap2	3478275	3478276	rs6459	33941608	Khan A	2021-05-03	J Am Soc Nephrol	Medical Records-Based Genetic Studies of the Complement System.	Complement C4 levels	3,247 European ancestry individuals, 600 African ancestry individuals, 151 East Asian ancestry individuals	NA	6p21.33	C4	rs6459-T	0.1	8E-30	(EA)	0.45	[0.39-0.50] unit increase	NR [NR] (imputed)	N
611	chr6_cox_hap2	3479574	3479575	rs6447	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C4A;C4B	5,353 Icelandic ancestry individuals	NA	6p21.33		rs6447-A	0.01467	1E-18		0.67965	[0.53-0.83] unit decrease	Illumina [7506463] (imputed)	N
611	chr6_cox_hap2	3479929	3479930	rs415620	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.33		rs415620-T	0.943	2E-17				Affymetrix [10369434] (imputed)	N
611	chr6_cox_hap2	3479951	3479952	rs7774739	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.33	NR	rs7774739-A	0.993	1E-10	(conditional)	0.483	[0.26-0.7]	Illumina [11270530] (imputed)	N
611	chr6_cox_hap2	3480025	3480026	rs7756934	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6p21.33	TNXB	rs7756934-?	NR	9E-6	(TAG 58:9)	0.2544521	[0.14-0.37] unit increase	Affymetrix [at least 2500000] (imputed)	N
611	chr6_cox_hap2	3481382	3481383	rs1135809	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	TNXB	rs1135809-G	NR	1E-11		0.0213697	[0.015-0.028] unit decrease	Affymetrix [323123] (imputed)	N
611	chr6_cox_hap2	3481854	3481855	rs2734313	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	TNXB	rs2734313-C	NR	9E-10		0.0195186	[0.013-0.026] unit increase	Affymetrix [323858] (imputed)	N
611	chr6_cox_hap2	3481854	3481855	rs2734313	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	TNXB	rs2734313-C	NR	3E-8		0.0176763	[0.011-0.024] unit increase	Affymetrix [127266] (imputed)	N
611	chr6_cox_hap2	3481854	3481855	rs2734313	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	TNXB	rs2734313-C	NR	5E-9		0.0169883	[0.011-0.023] unit increase	Affymetrix [321169] (imputed)	N
611	chr6_cox_hap2	3482008	3482009	rs2856451	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	TNXB	rs2856451-A	NR	8E-12		0.0193125	[0.014-0.025] unit decrease	Affymetrix [319769] (imputed)	N
611	chr6_cox_hap2	3482008	3482009	rs2856451	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	TNXB	rs2856451-A	NR	2E-13		0.0230817	[0.017-0.029] unit decrease	Affymetrix [323858] (imputed)	N
611	chr6_cox_hap2	3482008	3482009	rs2856451	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	TNXB	rs2856451-A	NR	6E-11		0.0185015	[0.013-0.024] unit decrease	Affymetrix [319769] (imputed)	N
611	chr6_cox_hap2	3482008	3482009	rs2856451	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	TNXB	rs2856451-A	NR	2E-11		0.0210983	[0.015-0.027] unit decrease	Affymetrix [127266] (imputed)	N
611	chr6_cox_hap2	3482008	3482009	rs2856451	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	TNXB	rs2856451-A	NR	2E-15		0.0227758	[0.017-0.028] unit decrease	Affymetrix [321169] (imputed)	N
611	chr6_cox_hap2	3482008	3482009	rs2856451	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p21.33	TNXB	rs2856451-G	0.518309	2E-11		0.017992081	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
611	chr6_cox_hap2	3482008	3482009	rs2856451	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	6p21.33	TNXB	rs2856451-G	0.518312	6E-11		0.017482799	[0.012-0.023] unit increase	Affymetrix [93095623] (imputed)	N
611	chr6_cox_hap2	3482008	3482009	rs2856451	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	6p21.33	NR	rs2856451-G	0.519311	4E-14		0.0506538	[0.037-0.064] unit decrease	Affymetrix [17914406] (imputed)	N
611	chr6_cox_hap2	3482008	3482009	rs2856451	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	White blood cell count	8,825 African American individuals, 18,251 Hispanic/Latino individuals, 543 Asian ancestry individuals, 606 Native American ancestry individuals, 383 individuals	NA	6p21.33	NR	rs2856451-?	NR	7E-6		0.01116211	[0.0063-0.016] unit increase	Illumina [30613845] (imputed)	N
611	chr6_cox_hap2	3482008	3482009	rs2856451	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	6p21.33	TNXB	rs2856451-G	0.5174	3E-95		0.07491311	[0.068-0.082] unit increase	Affymetrix [~ 2500000] (imputed)	N
611	chr6_cox_hap2	3482008	3482009	rs2856451	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	6p21.33	TNXB	rs2856451-G	0.5175	5E-57		0.05732686	[0.05-0.064] unit increase	Affymetrix [~ 2500000] (imputed)	N
611	chr6_cox_hap2	3482008	3482009	rs2856451	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	6p21.33	TNXB	rs2856451-G	0.5175	8E-50		0.05341342	[0.046-0.06] unit increase	Affymetrix [~ 2500000] (imputed)	N
611	chr6_cox_hap2	3485106	3485107	rs34214527	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	6p21.33	Intergenic	rs34214527-C	0.9156	4E-10		0.0256	[0.018-0.034] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
611	chr6_cox_hap2	3485225	3485226	rs2856448	35264221	Caron B	2022-03-09	Genome Med	Integrative genetic and immune cell analysis of plasma proteins in healthy donors identifies novel associations involving primary immune deficiency genes.	TN X plasma levels	400 French ancestry individuals	NA	6p21.33		rs2856448-G	NR	1E-38		0.685	[0.64-0.73] ng/mL increase	Illumina [5201092] (imputed)	N
611	chr6_cox_hap2	3485478	3485479	rs433061	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	6p21.33	NR	rs433061-A	0.111550236715686	4E-17		0.012269953	[0.0094-0.0151] unit decrease	NR [NR]	N
611	chr6_cox_hap2	3485478	3485479	rs433061	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	6p21.33	NR	rs433061-?	NR	8E-6		0.0786	[0.044-0.113] unit decrease	Illumina [at least 560000] (imputed)	N
611	chr6_cox_hap2	3488257	3488258	rs146280229	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.33	NR	rs146280229-C	0.007	1E-11	(conditional)	1.815	[1.64-1.99]	Illumina [11270530] (imputed)	N
611	chr6_cox_hap2	3490032	3490033	rs115521560	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL18RAP	5,360 Icelandic ancestry individuals	NA	6p21.33		rs115521560-C	0.07408	4E-6		0.168353	[0.097-0.24] unit decrease	Illumina [7506463] (imputed)	N
611	chr6_cox_hap2	3490032	3490033	rs115521560	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C4A;C4B	5,353 Icelandic ancestry individuals	NA	6p21.33		rs115521560-C	0.07408	6E-20		0.322359	[0.25-0.39] unit decrease	Illumina [7506463] (imputed)	N
611	chr6_cox_hap2	3490162	3490163	rs41316748	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	6p21.33	NR	rs41316748-C	0.0430592148955273	1E-8		0.012935713	[0.0085-0.0174] unit increase	NR [NR]	N
611	chr6_cox_hap2	3490162	3490163	rs41316748	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	6p21.33	NR	rs41316748-C	0.0430592148955273	2E-8		0.021394862	[0.014-0.029] unit increase	NR [NR]	N
611	chr6_cox_hap2	3490162	3490163	rs41316748	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	6p21.33	NR	rs41316748-C	0.0430592148955273	2E-8		0.0137647055	[0.0089-0.0186] unit increase	NR [NR]	N
611	chr6_cox_hap2	3490162	3490163	rs41316748	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	TNXB	rs41316748-C	0.042	2E-114	(Ubiquitin carboxyl-terminal hydrolase 25, USP25.9215.117.3)	1.31	[1.19-1.43] unit increase	Affymetrix [10572788] (imputed)	N
611	chr6_cox_hap2	3490162	3490163	rs41316748	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p21.33	TNXB	rs41316748-C	0.04	1E-12		1.19	[1.15-1.23]	Illumina [at least 560000] (imputed)	N
611	chr6_cox_hap2	3490396	3490397	rs2857009	23028341	Yang X	2012-09-13	PLoS Genet	Genome-wide association study for serum complement C3 and C4 levels in healthy Chinese subjects.	Complement C3 and C4 levels	1,999 Han Chinese ancestry male individuals	1,496 Han Chinese ancestry male individuals	6p21.33	C4	rs2857009-G	0.20	1E-22	(Serum level of C4)	0.08	[0.060-0.100] g/L increase	Illumina [1940245] (imputed)	N
611	chr6_cox_hap2	3491611	3491612	rs34562262	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RACGAP1	5,360 Icelandic ancestry individuals	NA	6p21.33		rs34562262-C	0.04252	7E-83		0.878733	[0.79-0.97] unit decrease	Illumina [7506463] (imputed)	N
611	chr6_cox_hap2	3491611	3491612	rs34562262	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL18RAP	5,360 Icelandic ancestry individuals	NA	6p21.33		rs34562262-C	0.04252	3E-89		0.913858	[0.82-1] unit decrease	Illumina [7506463] (imputed)	N
611	chr6_cox_hap2	3491611	3491612	rs34562262	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	6p21.33	TNXB	rs34562262-C	0.059314	9E-12		0.03548271	[0.025-0.046] unit increase	Affymetrix [93095623] (imputed)	N
611	chr6_cox_hap2	3491611	3491612	rs34562262	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	6p21.33	NR	rs34562262-?		2E-15	(AGER)	0.6405	[NR] unit decrease	Illumina [NR]	N
611	chr6_cox_hap2	3491780	3491781	rs11969759	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RACGAP1	5,360 Icelandic ancestry individuals	NA	6p21.33		rs11969759-T	0.03907	1E-34		0.606915	[0.51-0.7] unit decrease	Illumina [7506463] (imputed)	N
611	chr6_cox_hap2	3491780	3491781	rs11969759	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL18RAP	5,360 Icelandic ancestry individuals	NA	6p21.33		rs11969759-T	0.03907	2E-51		0.736692	[0.64-0.83] unit decrease	Illumina [7506463] (imputed)	N
611	chr6_cox_hap2	3491780	3491781	rs11969759	30636644	Nazarian A	2019-01-12	Alzheimers Res Ther	Genome-wide analysis of genetic predisposition to Alzheimer's disease and related sex disparities.	Alzheimer's disease	952 European ancestry male cases, 1,789 European ancestry female cases, 6,337 European ancestry male controls, 8,402 European ancestry female controls	NA	6p21.33	TNXB	rs11969759-?	NR	2E-6	(females)	1.6222337		Affymetrix, Illumina [2928658] (imputed)	N
611	chr6_cox_hap2	3495482	3495483	rs6937318	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	TNXB	rs6937318-T	NR	9E-16		0.0245113	[0.019-0.03] unit increase	Affymetrix [323123] (imputed)	N
611	chr6_cox_hap2	3495482	3495483	rs6937318	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.33		rs6937318-C	0.513236	2E-15		1.0343082	[1.03-1.04]	Affymetrix, Illumina [9851866] (imputed)	N
611	chr6_cox_hap2	3496513	3496514	rs369637	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	TNXB	rs369637-T	NR	9E-9		0.0231685	[0.015-0.031] unit increase	Affymetrix [323123] (imputed)	N
611	chr6_cox_hap2	3496513	3496514	rs369637	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.33	ABHD16A, AGER, AGPAT1, AIF1, APOM, ATF6B, ATP6V1G2, ATP6V1G2-DDX39B, BAG6, BTNL2, C2, C2-AS1, C4A, C4B, C4B_2, C6orf10, C6orf15, C6orf25, C6orf47, C6orf48, CCHCR1, CDSN, CFB, CLIC1, CSNK2B, CYP21A1P, CYP21A2, DDAH2, DDX39B, DXO, EGFL8, EHMT2, FKBPL, GPANK1, GPSM3, HCG23, HCG26, HCG27, HCP5, HLA-B, HLA-C, HLA-DOB, HLA-DQA1, HLA-DQA2, HLA-DQB1, HLA-DQB2, HLA-DRA, HLA-DRB1, HLA-DRB5, HLA-DRB6, HSPA1A, HSPA1B, HSPA1L, LOC100507547, LSM2, LST1, LTA, LTB, LY6G5B, LY6G5C, LY6G6C, LY6G6D, LY6G6E, LY6G6F, MCCD1, MICA, MICB, MIR1236, MIR3135B, MIR4646, MIR6721, MIR6832, MIR6833, MIR6891, MSH5, MSH5-SAPCD1, NCR3, NELFE, NEU1, NFKBIL1, NOTCH4, PBX2, POU5F1, PPT2, PPT2-EGFL8, PRRC2A, PRRT1, PSMB8, PSMB8-AS1, PSMB9, PSORS1C1, PSORS1C2, PSORS1C3, RNF5, RNF5P1, SAPCD1, SAPCD1-AS1, SKIV2L, SLC44A4, SNORA38, SNORD117, SNORD48, SNORD52, SNORD84, STK19, TAP1, TAP2, TCF19, TNF, TNXA, TNXB, VARS, VWA7, ZBTB12	rs369637-?		2E-10		1.098901	[1.06-1.12]	Affymetrix, Illumina [NR]	N
611	chr6_cox_hap2	3496757	3496758	rs1009382	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:0_[M+H]1+/Phosphatidylethanolamine_35:0_[M+H]1+/Phosphatidate_37:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	6p21.33		rs1009382-C	NR	4E-10		0.0841202	[0.058-0.111] unit decrease	Affymetrix [87696910] (imputed)	N
611	chr6_cox_hap2	3497458	3497459	rs12198173	20041166	Fellay J	2009-12-24	PLoS Genet	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	6p21.33	TNXB	rs12198173-?	NR	3E-6	(progression)			Illumina [NR]	N
611	chr6_cox_hap2	3498799	3498800	rs1150758	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p21.33	TNXB	rs1150758-C	NR	1E-10		0.0261542	[0.018-0.034] unit decrease	Affymetrix [323858] (imputed)	N
611	chr6_cox_hap2	3499855	3499856	rs1150757	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	6p21.33	NR	rs1150757-A	0.111940064634901	1E-14		0.014838932	[0.011-0.019] unit decrease	NR [NR]	N
611	chr6_cox_hap2	3499855	3499856	rs1150757	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	6p21.33	NR	rs1150757-A	0.111940064634901	3E-14		0.019090127	[0.014-0.024] unit decrease	NR [NR]	N
611	chr6_cox_hap2	3499855	3499856	rs1150757	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	6p21.33	NR	rs1150757-A	0.111940064634901	1E-14		0.012505894	[0.0093-0.0157] unit decrease	NR [NR]	N
611	chr6_cox_hap2	3499855	3499856	rs1150757	29769526	Estrada K	2018-05-16	Nat Commun	A whole-genome sequence study identifies genetic risk factors for neuromyelitis optica.	Neuromyelitis optica (AQP4-IgG-positive)	66 European ancestry cases, 784 European ancestry controls	66 European ancestry cases, 460 European ancestry controls	6p21.33	C4A, C4B	rs1150757-A	0.1	3E-16		4.66	[3.22-6.74]	Affymetrix [6804788] (imputed)	N
611	chr6_cox_hap2	3499855	3499856	rs1150757	29769526	Estrada K	2018-05-16	Nat Commun	A whole-genome sequence study identifies genetic risk factors for neuromyelitis optica.	Neuromyelitis optica	66 European ancestry AQP4-IgG antibody seropositive cases, 63 European ancestry AQP4-IgG antibody seronegative cases, 784 European ancestry controls	66 European ancestry AQP4-IgG antibody seropositive cases, 20 European ancestry AQP4-IgG antibody seronegative cases, 460 European ancestry controls	6p21.33	C4A, C4B	rs1150757-A	0.10	7E-12		2.86	[1.98-4.14]	Affymetrix [6804788] (imputed)	N
611	chr6_cox_hap2	3499855	3499856	rs1150757	27399966	Morris DL	2016-07-11	Nat Genet	Genome-wide association meta-analysis in Chinese and European individuals identifies ten new loci associated with systemic lupus erythematosus.	Systemic lupus erythematosus	1,659 Chinese ancestry cases, 3,398 Chinese ancestry controls, 4,036 European ancestry cases, 6,959 European ancestry controls	3,043 Chinese ancestry cases, 5,074 Chinese ancestry controls, 2,643 European ancestry cases, 9,032 European ancestry controls	6p21.33	MHC class III	rs1150757-?	0.092	2E-101	(EA)	2.53	[NR]	NR [6344733] (imputed)	N
611	chr6_cox_hap2	3499855	3499856	rs1150757	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	NA	6p21.33	TNXB	rs1150757-A		6E-107		2.33	[NR]	Illumina [> 644674] (imputed)	N
611	chr6_cox_hap2	3501350	3501351	rs9267797	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs9267797-T	0.015	7E-94	(Tenascin-X, TNXB.5698.60.3)	1.97	[1.77-2.17] unit increase	Affymetrix [10572788] (imputed)	N
611	chr6_cox_hap2	3503393	3503394	rs204883	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SURF1	5,347 Icelandic ancestry individuals	NA	6p21.33		rs204883-A	0.3642	4E-14		0.138805	[0.1-0.17] unit decrease	Illumina [7506463] (imputed)	N
611	chr6_cox_hap2	3503393	3503394	rs204883	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	6p21.33	NR	rs204883-A	0.404749301755246	2E-9		0.005591649	[0.0038-0.0074] unit increase	NR [NR]	N
611	chr6_cox_hap2	3503393	3503394	rs204883	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	6p21.33	Intergenic	rs204883-A	0.414	1E-8	(MTAG)	0.0096	[0.0063-0.0129] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
611	chr6_cox_hap2	3503393	3503394	rs204883	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	6p21.33	Intergenic	rs204883-A	0.3876	1E-10	(MTAG)	0.0151	[0.01-0.02] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
611	chr6_cox_hap2	3503393	3503394	rs204883	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	6p21.33	Intergenic	rs204883-A	0.3876	7E-9		0.017	[0.011-0.023] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
611	chr6_cox_hap2	3504266	3504267	rs1265889	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Nephrotic syndrome	775 European ancestry cases, 475,255 European ancestry controls, 1,314 East Asian ancestry cases, 177,412 East Asian ancestry controls	NA	6p21.33		rs1265889-A	NR	2E-16		0.524	[0.4-0.65] unit increase	Affymetrix, Illumina [25844401] (imputed)	N
611	chr6_cox_hap2	3504594	3504595	rs3117189	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FTMT	5,365 Icelandic ancestry individuals	NA	6p21.33		rs3117189-A	0.2078	7E-41		0.308372	[0.26-0.35] unit decrease	Illumina [7506463] (imputed)	N
611	chr6_cox_hap2	3509217	3509218	rs1150755	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	6p21.33	TNXB	rs1150755-?	NR	6E-117		1.3	[1.19-1.41]	Illumina [at least 5000000] (imputed)	N
611	chr6_cox_hap2	3511271	3511272	rs204881	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p21.33	NR	rs204881-?	NR	5E-14		0.1561	[0.12-0.2] unit increase	Illumina [at least 560000] (imputed)	N
611	chr6_cox_hap2	3515518	3515519	rs2021783	25249183	Lu X	2014-09-23	Hum Mol Genet	Genome-wide association study in Chinese identifies novel loci for blood pressure and hypertension.	Systolic blood pressure	11,816 Han Chinese ancestry individuals	69,146 Han Chinese ancestry individuals	6p21.33	CYP21A2	rs2021783-C	0.79	3E-9		0.68	[0.44-0.92] unit increase	Affymetrix, Illumina [2485448] (imputed)	N
611	chr6_cox_hap2	3515518	3515519	rs2021783	25249183	Lu X	2014-09-23	Hum Mol Genet	Genome-wide association study in Chinese identifies novel loci for blood pressure and hypertension.	Hypertension	5,065 Han Chinese ancestry cases, 4,404 Han Chinese ancestry controls	29,799 Han Chinese ancestry cases, 39,347 Han Chinese ancestry controls	6p21.33	CYP21A2	rs2021783-C	0.79	4E-11				Affymetrix, Illumina [2485448] (imputed)	N
611	chr6_cox_hap2	3515518	3515519	rs2021783	25249183	Lu X	2014-09-23	Hum Mol Genet	Genome-wide association study in Chinese identifies novel loci for blood pressure and hypertension.	Diastolic blood pressure	11,816 Han Chinese ancestry individuals	69,146 Han Chinese ancestry individuals	6p21.33	CYP21A2	rs2021783-C	0.79	2E-12		0.49	[0.35-0.63] unit increase	Affymetrix, Illumina [2485448] (imputed)	N
611	chr6_cox_hap2	3517934	3517935	rs17201560	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		TNXB	rs17201560-?	NR	3E-10		1.80132	[NR] unit decrease	Affymetrix [NR] (imputed)	N
611	chr6_cox_hap2	3520088	3520089	rs12211410	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6p21.33		rs12211410-T	0.085	2E-13	(conditional-joint)	0.0185	[0.014-0.023] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
611	chr6_cox_hap2	3520732	3520733	rs185819	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.33		rs185819-T	0.533	5E-83				Affymetrix [10369434] (imputed)	N
611	chr6_cox_hap2	3520732	3520733	rs185819	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p21.33		rs185819-T	0.533	1E-58				Affymetrix [10369434] (imputed)	N
611	chr6_cox_hap2	3520732	3520733	rs185819	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Automobile speeding propensity	404,291 European ancestry individuals	NA	6p21.33	ATF6B	rs185819-T	0.5357	2E-12		0.01581973	[0.011-0.02] unit increase	Affymetrix [11514463] (imputed)	N
611	chr6_cox_hap2	3520732	3520733	rs185819	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Systolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	6p21.33	TNXB	rs185819-C	0.513	2E-13	(EA, initial)	0.534	[0.39-0.68] unit increase	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
611	chr6_cox_hap2	3520732	3520733	rs185819	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Systolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	6p21.33	TNXB	rs185819-C	0.513	1E-17		0.365	[0.28-0.45] unit increase	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
611	chr6_cox_hap2	3520732	3520733	rs185819	18391951	Gudbjartsson DF	2008-04-06	Nat Genet	Many sequence variants affecting diversity of adult human height.	Height	30,968 European ancestry individuals	8,541 European ancestry individuals	6p21.33	HLA class III	rs185819-T	0.52	3E-8		5.2	[3.44-6.96] % s.d. increase	Affymetrix, Illumina [up to 304226]	N
611	chr6_cox_hap2	3521423	3521424	rs1150754	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	TNXB	rs1150754-T	NR	9E-16		0.0330216	[0.025-0.041] unit decrease	Affymetrix [323858] (imputed)	N
611	chr6_cox_hap2	3521423	3521424	rs1150754	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	TNXB	rs1150754-T	NR	3E-14		0.0312441	[0.023-0.039] unit decrease	Affymetrix [127266] (imputed)	N
611	chr6_cox_hap2	3521423	3521424	rs1150754	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Myeloperoxidase levels	21,758 European ancestry individuals	9,173 individuals	6p21.33		rs1150754-T	0.15	7E-9		0.0636	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
611	chr6_cox_hap2	3521423	3521424	rs1150754	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	6p21.33	TNXB	rs1150754-C	NR	3E-12	(EA)	1.117	[1.09-1.15]	Illumina [6627481] (imputed)	N
611	chr6_cox_hap2	3521423	3521424	rs1150754	21408207	Chung SA	2011-03-03	PLoS Genet	Differential genetic associations for systemic lupus erythematosus based on anti-dsDNA autoantibody production.	Systemic lupus erythematosus	811 anti-dsDNA positive European ancestry cases, 906 anti-dsDNA negative European ancestry cases, 4,813 European ancestry controls	NA	6p21.33	TNXB	rs1150754-A	0.13	6E-29	(anti-dsDNA +)	2.21	[1.93-2.53]	Illumina [421318] (imputed)	N
611	chr6_cox_hap2	3530529	3530530	rs1150753	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	6p21.33	NR	rs1150753-G	0.09	6E-19		1.25	[1.19-1.31]	Illumina [8468885] (imputed)	N
611	chr6_cox_hap2	3530529	3530530	rs1150753	26316170	Demirci FY	2015-08-28	Arthritis Rheumatol	Identification of a New Susceptibility Locus for Systemic Lupus Erythematosus on Chromosome 12 in Individuals of European Ancestry.	Systemic lupus erythematosus	661 European ancestry cases, 487 European ancestry controls	4,467 European ancestry cases, 9,114 European ancestry controls	6p21.33	TNXB	rs1150753-?	NR	6E-9				Affymetrix [up to 700598]	N
611	chr6_cox_hap2	3531129	3531130	rs774873925	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	TNXB	rs774873925-CA	NR	3E-8		0.0192957	[0.012-0.026] unit increase	Affymetrix [323123] (imputed)	N
611	chr6_cox_hap2	3531999	3532000	rs57079996	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs57079996-?		1E-7		1.06	[1.04-1.09]	Illumina [7645193] (imputed)	N
611	chr6_cox_hap2	3531999	3532000	rs57079996	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs57079996-?		4E-8		1.77	[1.45-2.18]	Illumina [7645193] (imputed)	N
611	chr6_cox_hap2	3534557	3534558	rs41270458	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RACGAP1	5,360 Icelandic ancestry individuals	NA	6p21.33		rs41270458-A	0.02122	1E-45		0.927486	[0.8-1.06] unit decrease	Illumina [7506463] (imputed)	N
611	chr6_cox_hap2	3534557	3534558	rs41270458	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL18RAP	5,360 Icelandic ancestry individuals	NA	6p21.33		rs41270458-A	0.02122	2E-37		0.831007	[0.7-0.96] unit decrease	Illumina [7506463] (imputed)	N
611	chr6_cox_hap2	3535387	3535388	rs1150752	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p21.33	TNXB	rs1150752-C		7E-35		0.041	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
611	chr6_cox_hap2	3535387	3535388	rs1150752	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	6p21.33	NR	rs1150752-C	0.112114488054202	6E-13		0.01584757	[0.012-0.02] unit decrease	NR [NR]	N
611	chr6_cox_hap2	3537426	3537427	rs13199524	30552173	Aterido A	2018-12-14	Ann Rheum Dis	Genetic variation at the glycosaminoglycan metabolism pathway contributes to the risk of psoriatic arthritis but not psoriasis.	Psoriatic arthritis	744 Spanish ancestry cases, 1,454 Spanish ancestry controls	1,430 cases, 1,417 controls	6p21.33	NR	rs13199524-?	NR	6E-10		6.2	[NR] z-score increase	Illumina [1387382] (imputed)	N
612	chr6_cox_hap2	3539155	3539156	rs116298992	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TNXB	5,363 Icelandic ancestry individuals	NA	6p21.32		rs116298992-T	0.03624	6E-299		1.674	[1.59-1.76] unit decrease	Illumina [7506463] (imputed)	N
612	chr6_cox_hap2	3539155	3539156	rs116298992	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.32	NR	rs116298992-C	0.96390625	8E-63	(C2, 3186_2_2)	1.129958	[1-1.26] unit increase	Illumina [> 1000000] (imputed)	N
612	chr6_cox_hap2	3539155	3539156	rs116298992	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.32	NR	rs116298992-C	0.96390625	6E-141	(TNXB, 5698_60_3)	1.6212647	[1.5-1.74] unit increase	Illumina [> 1000000] (imputed)	N
612	chr6_cox_hap2	3539155	3539156	rs116298992	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.32	NR	rs116298992-C	0.96390625	5E-58	(ISG15, 14148_2_3)	1.0691733	[0.94-1.2] unit increase	Illumina [> 1000000] (imputed)	N
612	chr6_cox_hap2	3539155	3539156	rs116298992	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.32	NR	rs116298992-C	0.96390625	3E-16	(DEFB119, 13455_10_3)	0.5401916	[0.41-0.67] unit decrease	Illumina [> 1000000] (imputed)	N
612	chr6_cox_hap2	3539155	3539156	rs116298992	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.32	NR	rs116298992-C	0.96390625	3E-12	(MICA, 2730_58_2)	0.47020385	[0.34-0.6] unit increase	Illumina [> 1000000] (imputed)	N
612	chr6_cox_hap2	3539155	3539156	rs116298992	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.32	NR	rs116298992-C	0.96390625	2E-42	(CFB, 4129_72_1)	0.90520996	[0.78-1.03] unit increase	Illumina [> 1000000] (imputed)	N
612	chr6_cox_hap2	3539155	3539156	rs116298992	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.32	NR	rs116298992-C	0.96390625	1E-14	(FTMT, 8048_9_3)	0.51547647	[0.39-0.65] unit decrease	Illumina [> 1000000] (imputed)	N
612	chr6_cox_hap2	3540729	3540730	rs41268896	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Atopic dermatitis	2,079 European ancestry cases, 3,867 European ancestry controls	NA	6p21.32	c6orf10	rs41268896-A	NR	4E-8		1.298	[1.238-1.361]	Affymetrix, Illumina, Perlegen [up to 5493100] (imputed)	N
612	chr6_cox_hap2	3540734	3540735	rs41268899	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	TNXB, ATF6B	rs41268899-A	NR	4E-8		0.0257754	[0.017-0.035] unit increase	Affymetrix [321114] (imputed)	N
612	chr6_cox_hap2	3541668	3541669	rs41268902	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	6p21.32	NR	rs41268902-A	NR	5E-6		1.09	[NR]	Illumina [7158791] (imputed)	N
612	chr6_cox_hap2	3541670	3541671	rs28732173	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p21.32	NR	rs28732173-?	NR	4E-16		0.166	[0.13-0.21] unit decrease	Illumina [at least 560000] (imputed)	N
612	chr6_cox_hap2	3541677	3541678	rs3117181	21829377	Lemaitre RN	2011-07-28	PLoS Genet	Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Plasma omega-3 polyunsaturated fatty acid levels (docosapentaenoic acid)	8,866 European ancestry individuals	NA	6p21.32	TNXB	rs3117181-C	NR	5E-7		0.02	[NR] % increase	Affymetrix, Illumina [NR]	N
612	chr6_cox_hap2	3542554	3542555	rs3134954	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Intraocular pressure	133,492 European ancestry individuals	NA	6p21.32	TNXB	rs3134954-?	NR	3E-9		0.1058	[0.071-0.141] unit increase	Affymetrix, Illumina [up to 40000000] (imputed)	N
612	chr6_cox_hap2	3545465	3545466	rs12153855	23886662	Weidinger S	2013-07-25	Hum Mol Genet	A genome-wide association study of atopic dermatitis identifies loci with overlapping effects on asthma and psoriasis.	Atopic dermatitis	1563 European ancestry cases, 4,054 European ancestry controls	2,286 European ancestry cases, 3,160 European ancestry controls	6p21.32	TNXB, CREBL1	rs12153855-T	NR	3E-14		1.581	[1.405-1.779]	Illumina [2406139] (imputed)	N
612	chr6_cox_hap2	3545465	3545466	rs12153855	22694956	Cipriani V	2012-06-13	Hum Mol Genet	Genome-wide association study of age-related macular degeneration identifies associated variants in the TNXB-FKBPL-NOTCH4 region of chromosome 6p21.3.	Age-related macular degeneration	893 European ancestry cases, 2,199 European ancestry controls	1,411 European ancestry cases, 1,431 European ancestry controls	6p21.32	TNXB	rs12153855-C	0.011	1E-9		1.44	[1.28-1.63]	Illumina [2272849] (imputed)	N
612	chr6_cox_hap2	3546224	3546225	rs429150	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	TNXB, ATF6B	rs429150-C	NR	3E-8		0.0158143	[0.01-0.021] unit increase	Affymetrix [321169] (imputed)	N
612	chr6_cox_hap2	3546224	3546225	rs429150	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6p21.32	ATF6B, TNXB	rs429150-C	0.445264	8E-12		0.016466303	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
612	chr6_cox_hap2	3546224	3546225	rs429150	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6p21.32		rs429150-T	0.5292	2E-9		0.0085	[0.0058-0.0112] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
612	chr6_cox_hap2	3546224	3546225	rs429150	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6p21.32	Intergenic	rs429150-T	0.5292	1E-11	(MTAG)	0.0089	[0.0064-0.0114] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
612	chr6_cox_hap2	3546224	3546225	rs429150	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	6p21.32	TNXB, ATF6B	rs429150-C	0.4446	3E-13		0.02583585	[0.019-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
612	chr6_cox_hap2	3547160	3547161	rs2269426	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Neuroticism	274,107 British ancestry individuals	NA	6p21.32	NR	rs2269426-A	0.3594	3E-12		0.01334	[0.0096-0.0171] unit increase	NR [8968716] (imputed)	N
612	chr6_cox_hap2	3547160	3547161	rs2269426	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	6p21.32	NR	rs2269426-A	0.37783192572683	3E-11		0.010916309	[0.0077-0.0141] unit increase	NR [NR]	N
612	chr6_cox_hap2	3547160	3547161	rs2269426	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	6p21.32	NR	rs2269426-A	0.37783192572683	4E-11		0.006849158	[0.0048-0.0089] unit increase	NR [NR]	N
612	chr6_cox_hap2	3547160	3547161	rs2269426	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	6p21.32	HLA-C	rs2269426-A	0.359398	1E-14		7.71	z score increase	NR [10847151] (imputed)	N
612	chr6_cox_hap2	3547160	3547161	rs2269426	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling worry	372,869 European ancestry individuals	NA	6p21.32	HLA-C	rs2269426-A	0.359398	4E-15		7.868	unit increase	NR [10847151] (imputed)	N
612	chr6_cox_hap2	3547160	3547161	rs2269426	19198610	Gudbjartsson DF	2009-02-08	Nat Genet	Sequence variants affecting eosinophil numbers associate with asthma and myocardial infarction.	Eosinophil counts	9,392 European ancestry individuals	12,118 European ancestry individuals, 5,212 East Asian ancestry individuals	6p21.32	MHC	rs2269426-T	0.76	3E-6	(EA)	4.6	[2.7-6.6] % standard unit increase	Illumina [312179]	N
612	chr6_cox_hap2	3550228	3550229	rs17207986	20848476	Haritunians T	2010-11-01	Inflamm Bowel Dis	Genetic predictors of medically refractory ulcerative colitis.	Ulcerative colitis	324 European ancestry medically refractory ulcerative colitis cases, 537 European ancestry non-medically refractory ulcerative colitis cases, 2,601 European ancestry controls	NA	6p21.32	MHC	rs17207986-G	NR	1E-16	(Analysis III)	3.95	[NR]	Illumina [313720]	N
612	chr6_cox_hap2	3550807	3550808	rs3130342	32469254	Matsunaga H	2020-05-29	Circ Genom Precis Med	Transethnic Meta-analysis of Genome-wide Association Studies Identifies Three New Loci and Characterizes Population-specific Differences for Coronary Artery Disease.	Coronary artery disease	15,302 Japanese ancestry cases, 76,014 European and East Asian ancestry cases, 36,140 Japanese ancestry controls, 264,785 European and East Asian ancestry controls	NA	6p21.32	TNXB, ATF6B	rs3130342-C	0.83	3E-9		1.08	[1.06-1.09]	Illumina [5167567] (imputed)	N
612	chr6_cox_hap2	3550807	3550808	rs3130342	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	6p21.32	TNXB, ATF6B	rs3130342-A	0.149	5E-10		0.126	[0.087-0.165] unit decrease	Affymetrix [~ 11900000] (imputed)	N
612	chr6_cox_hap2	3550852	3550853	rs1269852	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ISG15	5,349 Icelandic ancestry individuals	NA	6p21.32		rs1269852-C	0.08142	2E-98		0.682855	[0.62-0.75] unit increase	Illumina [7506463] (imputed)	N
612	chr6_cox_hap2	3550852	3550853	rs1269852	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	6p21.32	NR	rs1269852-G	0.0755467	2E-8		0.067160755	[0.044-0.09] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
612	chr6_cox_hap2	3551044	3551045	rs9469084	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	6p21.32	ATF6B, TNXB	rs9469084-T	0.065593	5E-11		0.0346535	[0.027-0.043] unit decrease	Affymetrix [93095623] (imputed)	N
612	chr6_cox_hap2	3553836	3553837	rs8111	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ATF6B	5,359 Icelandic ancestry individuals	NA	6p21.32		rs8111-T	0.2409	7E-30		0.245233	[0.2-0.29] unit increase	Illumina [7506463] (imputed)	N
612	chr6_cox_hap2	3553836	3553837	rs8111	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	ATF6B	rs8111-T	0.266	1E-15	(Cyclic AMP-dependent transcription factor ATF-6 alpha, ATF6.11277.23.3)	0.22	[0.16-0.28] unit decrease	Affymetrix [10572788] (imputed)	N
612	chr6_cox_hap2	3553836	3553837	rs8111	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling hurt	372,047 European ancestry individuals	NA	6p21.32	HLA-C	rs8111-T	0.251639	1E-8		5.73	z score increase	NR [10847151] (imputed)	N
612	chr6_cox_hap2	3553836	3553837	rs8111	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p21.32	ATF6B	rs8111-?	0.6	1E-6	(Turkish)	1.5873016	[1.32-1.92]	Illumina [up to 547389]	N
612	chr6_cox_hap2	3553961	3553962	rs8283	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TYK2	5,361 Icelandic ancestry individuals	NA	6p21.32		rs8283-G	0.1925	3E-11		0.158998	[0.11-0.21] unit increase	Illumina [7506463] (imputed)	N
612	chr6_cox_hap2	3553961	3553962	rs8283	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL21	5,363 Icelandic ancestry individuals	NA	6p21.32		rs8283-G	0.1925	1E-29		0.268365	[0.22-0.31] unit increase	Illumina [7506463] (imputed)	N
612	chr6_cox_hap2	3553961	3553962	rs8283	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FTMT	5,365 Icelandic ancestry individuals	NA	6p21.32		rs8283-G	0.1925	1E-46		0.339863	[0.29-0.39] unit increase	Illumina [7506463] (imputed)	N
612	chr6_cox_hap2	3553961	3553962	rs8283	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C4A;C4B	5,353 Icelandic ancestry individuals	NA	6p21.32		rs8283-G	0.1925	4E-102		0.479658	[0.44-0.52] unit increase	Illumina [7506463] (imputed)	N
612	chr6_cox_hap2	3553961	3553962	rs8283	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.32	ATF6B, TNXB	rs8283-G	0.1906439	2E-17	(Complement C4)	0.487	[0.38-0.6] unit increase	Affymetrix [509946]	N
612	chr6_cox_hap2	3559515	3559516	rs2228628	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ATF6	5,363 Icelandic ancestry individuals	NA	6p21.32		rs2228628-C	0.25	4E-19		0.190713	[0.15-0.23] unit decrease	Illumina [7506463] (imputed)	N
612	chr6_cox_hap2	3559803	3559804	rs204888	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.32	TNXB, ATF6B, FKBPL	rs204888-T	0.09628887	2E-12	(EA, Complement C4b)	0.5278	[0.38-0.67] unit increase	Affymetrix [509946]	N
612	chr6_cox_hap2	3565252	3565253	rs204893	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.32		rs204893-T	0.566	3E-36				Affymetrix [10369434] (imputed)	N
612	chr6_cox_hap2	3565252	3565253	rs204893	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.32		rs204893-T	0.566	1E-56				Affymetrix [10369434] (imputed)	N
612	chr6_cox_hap2	3565252	3565253	rs204893	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling nervous	373,121 European ancestry individuals	NA	6p21.32	HLA-C	rs204893-T	0.441671	8E-11		6.5	z score decrease	NR [10847151] (imputed)	N
612	chr6_cox_hap2	3565252	3565253	rs204893	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	6p21.32	intergenic	rs204893-T	0.55833	1E-12		7.076	z score decrease	Illumina [18485882] (imputed)	N
612	chr6_cox_hap2	3566660	3566661	rs3130288	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p21.32	NR	rs3130288-A	0.12	5E-11		1.16	[1.11-1.22]	Affymetrix [9886854] (imputed)	N
612	chr6_cox_hap2	3566660	3566661	rs3130288	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p21.32	NR	rs3130288-A	0.12	5E-14			[NR]	Affymetrix [9886854] (imputed)	N
612	chr6_cox_hap2	3566660	3566661	rs3130288	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in never smokers	8,631 European ancestry cases, 120,544 European ancestry controls	NA	6p21.32	NR	rs3130288-A	0.12	2E-11		1.17	[1.12-1.23]	Affymetrix [9886854] (imputed)	N
612	chr6_cox_hap2	3566660	3566661	rs3130288	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome)	345 Swedish ancestry cases, 2,025 Swedish ancestry controls	251 European ancestry cases, 4,901 European ancestry controls	6p21.32	CREBL1	rs3130288-A	0.345	4E-66		4.16	[3.54-4.90]	Illumina [118177]	N
612	chr6_cox_hap2	3566660	3566661	rs3130288	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p21.32	CREBL1	rs3130288-A	0.345	3E-33				Illumina [118177]	N
612	chr6_cox_hap2	3568270	3568271	rs41268905	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	6p21.32	FKBPL	rs41268905-A	0.1048	4E-11		0.003	[0.002-0.004] unit decrease	Affymetrix [15275733] (imputed)	N
612	chr6_cox_hap2	3572964	3572965	rs3134963	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	6p21.32	FKBPL, PRRT1	rs3134963-T	0.149	3E-10		0.128	[0.089-0.167] unit decrease	Affymetrix [~ 11900000] (imputed)	N
612	chr6_cox_hap2	3573340	3573341	rs13211318	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Strep throat	52,487 European ancestry cases, 22,017 European ancestry controls	NA	6p21.32	NR	rs13211318-?	NR	3E-7		0.051	[0.031-0.071] unit increase	Illumina [at least 560000] (imputed)	N
612	chr6_cox_hap2	3574414	3574415	rs145827824	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.32	NR	rs145827824-G	0.011	2E-16		0.699809	[0.53-0.87] unit increase	Affymetrix [up to 8900000] (imputed)	N
612	chr6_cox_hap2	3574414	3574415	rs145827824	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.32	NR	rs145827824-G	0.011	1E-8	(women)	0.797658	[0.53-1.07] unit increase	Affymetrix [up to 8900000] (imputed)	N
612	chr6_cox_hap2	3574414	3574415	rs145827824	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.32	NR	rs145827824-G	0.011	1E-7	(men)	0.57225	[0.36-0.78] unit increase	Affymetrix [up to 8900000] (imputed)	N
612	chr6_cox_hap2	3577802	3577803	rs3096698	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL18RAP	5,360 Icelandic ancestry individuals	NA	6p21.32		rs3096698-T	0.4309	1E-12		0.134973	[0.098-0.172] unit decrease	Illumina [7506463] (imputed)	N
612	chr6_cox_hap2	3577802	3577803	rs3096698	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	6p21.32	PRRT1	rs3096698-T	0.3668	6E-15		0.2611	[0.2-0.33] mmHg decrease	Affymetrix [NR] (imputed)	N
612	chr6_cox_hap2	3580642	3580643	rs204999	23022100	Franceschini N	2012-09-26	Am J Hum Genet	Discovery and fine mapping of serum protein loci through transethnic meta-analysis.	Serum total protein level	Up to 25,539 European ancestry individuals, 10,168 Japanese ancestry individuals	NA		intergenic	rs204999-A	0.74	4E-11		0.0266	[0.019-0.034] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
612	chr6_cox_hap2	3580642	3580643	rs204999	23022100	Franceschini N	2012-09-26	Am J Hum Genet	Discovery and fine mapping of serum protein loci through transethnic meta-analysis.	Serum total protein level	Up to 25,539 European ancestry individuals, 10,168 Japanese ancestry individuals	NA		intergenic	rs204999-A	0.74	3E-9	(EA)	0.025	[0.017-0.033] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
612	chr6_cox_hap2	3580642	3580643	rs204999	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA		intergenic	rs204999-G	0.2643	9E-40		2.44	[NR]	Illumina [242824]	N
612	chr6_cox_hap2	3581177	3581178	rs77619009	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.32		rs77619009-A	0.944	4E-16				Affymetrix [10369434] (imputed)	N
612	chr6_cox_hap2	3581246	3581247	rs3130277	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	PRRT1	rs3130277-C	NR	2E-8		0.0208014	[0.014-0.028] unit decrease	Affymetrix [323858] (imputed)	N
612	chr6_cox_hap2	3581686	3581687	rs565981183	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs565981183-CA	0.876	1E-11		1.192	[1.14-1.24]	Illumina [11270530] (imputed)	N
612	chr6_cox_hap2	3583288	3583289	rs3130279	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL21	5,363 Icelandic ancestry individuals	NA	6p21.32		rs3130279-A	0.207	5E-14		0.174333	[0.13-0.22] unit increase	Illumina [7506463] (imputed)	N
612	chr6_cox_hap2	3585180	3585181	rs9296009	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	PRRT1	rs9296009-T	0.216	7E-13	(UDP-N-acetylhexosamine pyrophosphorylase, UAP1.13580.2.3)	0.21	[0.15-0.27] unit decrease	Affymetrix [10572788] (imputed)	N
612	chr6_cox_hap2	3585180	3585181	rs9296009	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	PRRT1	rs9296009-T	0.216	3E-37	(Rac GTPase-activating protein 1, RACGAP1.13587.10.3)	0.37	[0.31-0.43] unit decrease	Affymetrix [10572788] (imputed)	N
612	chr6_cox_hap2	3585180	3585181	rs9296009	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	PRRT1	rs9296009-T	0.196796488164359	4E-6	(IGP18)	0.1779	[0.1-0.25] unit decrease	Illumina [~ 2500000] (imputed)	N
612	chr6_cox_hap2	3585180	3585181	rs9296009	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	PRRT1	rs9296009-T	0.19676420855615	4E-6	(IGP25)	0.1773	[0.1-0.25] unit decrease	Illumina [~ 2500000] (imputed)	N
612	chr6_cox_hap2	3585180	3585181	rs9296009	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	PRRT1	rs9296009-T	0.196432337204109	4E-8	(IGP23)	0.2111	[0.14-0.29] unit decrease	Illumina [~ 2500000] (imputed)	N
612	chr6_cox_hap2	3585887	3585888	rs28732178	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	6p21.32	NR	rs28732178-?	NR	8E-11		6.496	NR z score decrease	Illumina [at least 830937] (imputed)	N
612	chr6_cox_hap2	3590564	3590565	rs3131283	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	PRRT1	rs3131283-T	NR	4E-16		0.0353753	[0.027-0.044] unit increase	Affymetrix [323123] (imputed)	N
612	chr6_cox_hap2	3591382	3591383	rs1053924	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:0_[M+H]1+/Phosphatidylethanolamine_35:0_[M+H]1+/Phosphatidate_37:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	6p21.32		rs1053924-T	NR	3E-10		0.0786544	[0.054-0.103] unit decrease	Affymetrix [87696910] (imputed)	N
612	chr6_cox_hap2	3593139	3593140	rs3096696	25987655	Fernandez CA	2015-05-18	Blood	Genome-wide analysis links NFATC2 with asparaginase hypersensitivity.	Asparaginase hypersensitivity in acute lymphoblastic leukemia	3,126 child cases	182 child cases	6p21.32	PPT2	rs3096696-A		4E-6		1.478		Affymetrix [NR]	N
612	chr6_cox_hap2	3598156	3598157	rs3134950	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:0_[M+H]1+/Phosphatidylethanolamine_35:0_[M+H]1+/Phosphatidate_37:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	6p21.32		rs3134950-C	NR	3E-16		0.100569	[0.076-0.125] unit decrease	Affymetrix [87696910] (imputed)	N
612	chr6_cox_hap2	3598156	3598157	rs3134950	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	6p21.32	EGFL8	rs3134950-A	0.622	1E-8		0.01510972	[0.0099-0.0203] unit decrease	Affymetrix [~ 11515000] (imputed)	N
612	chr6_cox_hap2	3598156	3598157	rs3134950	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	6p21.32	PPT2	rs3134950-A	0.624	1E-10		0.0079	[0.0055-0.0103] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
612	chr6_cox_hap2	3598156	3598157	rs3134950	24823311	Guan W	2014-05-13	Circ Cardiovasc Genet	Genome-wide association study of plasma N6 polyunsaturated fatty acids within the cohorts for heart and aging research in genomic epidemiology consortium.	Plasma omega-6 polyunsaturated fatty acid levels (adrenic acid)	8,631 European ancestry individuals	NA	6p21.32	AGPAT1, PPT2	rs3134950-A	0.625	6E-6		0.01	[NR] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
612	chr6_cox_hap2	3598156	3598157	rs3134950	23362303	Wu JH	2013-01-29	Circ Cardiovasc Genet	Genome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortium.	Oleic acid (18:1n-9) levels	8,961 European ancestry individuals		6p21.32	EGFL8, AGPAT1, PPT2	rs3134950-A	NR	1E-6		0.0945	unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
612	chr6_cox_hap2	3599072	3599073	rs9267812	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.32		rs9267812-C	0.865	1E-35				Affymetrix [10369434] (imputed)	N
612	chr6_cox_hap2	3599072	3599073	rs9267812	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.32		rs9267812-C	0.865	2E-29				Affymetrix [10369434] (imputed)	N
612	chr6_cox_hap2	3599072	3599073	rs9267812	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.32		rs9267812-C	0.865	7E-20				Affymetrix [10369434] (imputed)	N
612	chr6_cox_hap2	3599072	3599073	rs9267812	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.32		rs9267812-C	0.865	9E-41				Affymetrix [10369434] (imputed)	N
612	chr6_cox_hap2	3599072	3599073	rs9267812	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p21.32		rs9267812-C	0.865	8E-22				Affymetrix [10369434] (imputed)	N
612	chr6_cox_hap2	3599072	3599073	rs9267812	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	6p21.32	PPT2	rs9267812-T	0.135386	2E-6		0.021886	[0.013-0.031] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
612	chr6_cox_hap2	3599072	3599073	rs9267812	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	6p21.32	PPT2	rs9267812-T	0.132705	3E-9		0.022969	[0.015-0.031] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
612	chr6_cox_hap2	3599072	3599073	rs9267812	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs9267812-T	0.136	1E-30	(Rac GTPase-activating protein 1, RACGAP1.13587.10.3)	0.4	[0.32-0.48] unit decrease	Affymetrix [10572788] (imputed)	N
612	chr6_cox_hap2	3605190	3605191	rs3096697	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.32	EGFL8	rs3096697-T	0.2054	1E-41		2.58	[NR]	Illumina [242824]	N
612	chr6_cox_hap2	3607227	3607228	rs1061808	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for LDL particles	115,082 European ancestry individuals	NA	6p21.32		rs1061808-T	0.3719	6E-9		0.0242981	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
612	chr6_cox_hap2	3607227	3607228	rs1061808	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	6p21.32		rs1061808-G	NR	1E-22		0.0181	[0.015-0.022] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
612	chr6_cox_hap2	3607227	3607228	rs1061808	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:0_[M+H]1+/Phosphatidylethanolamine_35:0_[M+H]1+/Phosphatidate_37:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	6p21.32		rs1061808-T	NR	1E-15		0.0960224	[0.072-0.12] unit decrease	Affymetrix [87696910] (imputed)	N
612	chr6_cox_hap2	3607227	3607228	rs1061808	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	6p21.32	AGPAT1	rs1061808-T	0.3698	1E-23		0.25	[0.2-0.3] mmHg decrease	Affymetrix [NR] (imputed)	N
612	chr6_cox_hap2	3607227	3607228	rs1061808	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs1061808-G	0.631	8E-37	(Tenascin-X, TNXB.5698.60.3)	0.32	[0.28-0.36] unit increase	Affymetrix [10572788] (imputed)	N
612	chr6_cox_hap2	3607227	3607228	rs1061808	22359512	Demirkan A	2012-02-16	PLoS Genet	Genome-wide association study identifies novel loci associated with circulating phospho- and sphingolipid concentrations.	Phospholipid levels (plasma)	4,034 European ancestry individuals	NA	6p21.32	AGPAT1	rs1061808-?	NR	8E-10	(proportions)	0.9	[NR] % increase	Illumina [NR] (imputed)	N
612	chr6_cox_hap2	3609225	3609226	rs3130283	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Angina pectoris	30,025 European ancestry cases, 440,906 European ancestry controls, 14,007 East Asian ancestry cases, 145,158 East Asian ancestry controls	NA	6p21.32		rs3130283-C	NR	3E-11		0.0776	[0.055-0.101] unit increase	Affymetrix, Illumina [25842036] (imputed)	N
612	chr6_cox_hap2	3609225	3609226	rs3130283	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	6p21.32	NR	rs3130283-C	0.8533	6E-27		0.0617	[0.051-0.073] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
612	chr6_cox_hap2	3609297	3609298	rs114004994	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IFNAR1	5,357 Icelandic ancestry individuals	NA	6p21.32		rs114004994-C	0.04783	3E-14		0.323386	[0.24-0.41] unit decrease	Illumina [7506463] (imputed)	N
612	chr6_cox_hap2	3609297	3609298	rs114004994	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA	6p21.32	PPT2-EGFL8	rs114004994-?	NR	5E-9		1.80656	[NR] unit decrease	Affymetrix [NR] (imputed)	N
612	chr6_cox_hap2	3611167	3611168	rs3130284	25987655	Fernandez CA	2015-05-18	Blood	Genome-wide analysis links NFATC2 with asparaginase hypersensitivity.	Asparaginase hypersensitivity in acute lymphoblastic leukemia	3,126 child cases	182 child cases	6p21.32	AGPAT1	rs3130284-C	NR	7E-6		1.464		Affymetrix [NR]	N
612	chr6_cox_hap2	3616387	3616388	rs2269423	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:0_[M+H]1+/Phosphatidylethanolamine_35:0_[M+H]1+/Phosphatidate_37:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	6p21.32		rs2269423-A	NR	9E-17		0.0987433	[0.075-0.122] unit decrease	Affymetrix [87696910] (imputed)	N
612	chr6_cox_hap2	3617172	3617173	rs3134945	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.32	RNF5	rs3134945-T	0.2049	2E-40		2.54	[NR]	Illumina [242824]	N
612	chr6_cox_hap2	3617729	3617731	rs41315238	34782693	Yamada M	2021-11-15	Commun Biol	Genetic loci for lung function in Japanese adults with adjustment for exhaled nitric oxide levels as airway inflammation indicator.	Lung function (FEV1/FVC)	14,061 Japanese ancestry individuals	5,661 Japanese ancestry individuals	6p21.32		rs41315238-A	0.1513	7E-24		0.1542	[0.12-0.18] unit increase	Affymetrix [8587571] (imputed)	N
612	chr6_cox_hap2	3617837	3617838	rs41268928	26083729	Maruthur NM	2015-06-17	PLoS One	Genetics of Plasma Soluble Receptor for Advanced Glycation End-Products and Cardiovascular Outcomes in a Community-based Population: Results from the Atherosclerosis Risk in Communities Study.	Advanced glycation end-product levels	581 Black individuals, 1,737 European ancestry individuals	NA	6p21.32	RNF5, NOTCH4, AGER	rs41268928-C	0.04	3E-16	(EA)	0.69	unit decrease	Affymetrix [up to 9100000] (imputed)	N
612	chr6_cox_hap2	3618441	3618442	rs3134943	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.32	RNF5	rs3134943-T	NR	2E-7	(women)	0.0338184	[0.021-0.047] unit increase	Illumina [13520550] (imputed)	N
612	chr6_cox_hap2	3618711	3618712	rs1062070	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Waist circumference variance	347,158 European ancestry individuals	NA	6p21.32	RNF5	rs1062070-?	NR	7E-12				NR [5554549] (imputed)	N
612	chr6_cox_hap2	3618711	3618712	rs1062070	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Waist circumference	347,158 European ancestry individuals	NA	6p21.32	RNF5	rs1062070-?	NR	6E-10				NR [5554549] (imputed)	N
612	chr6_cox_hap2	3619940	3619941	rs2071288	26083729	Maruthur NM	2015-06-17	PLoS One	Genetics of Plasma Soluble Receptor for Advanced Glycation End-Products and Cardiovascular Outcomes in a Community-based Population: Results from the Atherosclerosis Risk in Communities Study.	Advanced glycation end-product levels	581 Black individuals, 1,737 European ancestry individuals	NA	6p21.32	AGER, RNF5, NOTCH4	rs2071288-T	0.1	2E-8	(Blacks)	0.56	unit decrease	Affymetrix [up to 9100000] (imputed)	N
612	chr6_cox_hap2	3620481	3620482	rs9391855	33766948	Zhu Z	2021-03-25	Eur Respir J	A large-scale genome-wide association analysis of lung function in the Chinese population identifies novel loci and highlights shared genetic etiology with obesity.	Lung function (FEV1/FVC)	100,285 Chinese ancestry individuals	NA	6p21.32		rs9391855-C	0.78	2E-22		0.053	unit decrease	Affymetrix [NR] (imputed)	N
612	chr6_cox_hap2	3622123	3622124	rs2070600	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein AGER	5,368 Icelandic ancestry individuals	NA	6p21.32		rs2070600-T	0.04774	1E-31		0.516865	[0.43-0.6] unit decrease	Illumina [7506463] (imputed)	N
612	chr6_cox_hap2	3622123	3622124	rs2070600	33909500	Moll M	2021-04-28	Am J Physiol Lung Cell Mol Physiol	A Systematic Analysis of Protein-altering Exonic Variants in Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease	up to 31,465 European ancestry cases, up to 203,688 European ancestry controls, up to 1,413 African ancestry cases, up to 6,080 African ancestry controls, up to 287 East Asian ancestry cases, up to 7,484 East Asian ancestry controls, up to 61 Hispanic cases, up to 613 Hispanic controls	NA	6p21.32	AGER	rs2070600-C	0.94	1E-16		1.19	[1.15 -1.25]	Illumina [at least 109036]	N
612	chr6_cox_hap2	3622123	3622124	rs2070600	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs2070600-T	NR	9E-12		1.2804097	[1.19-1.38]	Affymetrix [7846216] (imputed)	N
612	chr6_cox_hap2	3622123	3622124	rs2070600	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	6p21.32	AGER	rs2070600-C	0.94	1E-17		1.21	[1.15-1.26]	Affymetrix, Illumina [6224355] (imputed)	N
612	chr6_cox_hap2	3622123	3622124	rs2070600	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	6p21.32	AGER	rs2070600-T	0.0629	2E-45		0.073	[0.063-0.083] unit increase	Affymetrix [19819130] (imputed)	N
612	chr6_cox_hap2	3622123	3622124	rs2070600	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	6p21.32	AGER	rs2070600-T	0.0629	8E-15		0.0379	[0.028-0.048] unit decrease	Affymetrix [19819130] (imputed)	N
612	chr6_cox_hap2	3622123	3622124	rs2070600	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	6p21.32	AGER	rs2070600-T	0.0629	3E-189		0.1452	[0.14-0.15] unit increase	Affymetrix [19819130] (imputed)	N
612	chr6_cox_hap2	3622123	3622124	rs2070600	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	6p21.32	AGER	rs2070600-T	0.0629	5E-11		0.0318	[0.022-0.041] unit increase	Affymetrix [19819130] (imputed)	N
612	chr6_cox_hap2	3622123	3622124	rs2070600	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	AGER	rs2070600-T	0.067	4E-33	(Advanced glycosylation end product-specific receptor, soluble, AGER.4125.52.2)	0.57	[0.47-0.67] unit decrease	Affymetrix [10572788] (imputed)	N
612	chr6_cox_hap2	3622123	3622124	rs2070600	28369058	Folkersen L	2017-04-03	PLoS Genet	Mapping of 79 loci for 83 plasma protein biomarkers in cardiovascular disease.	Blood protein levels in cardiovascular risk	3,394 European ancestry individuals	2,639 individuals	6p21.32	AGER	rs2070600-T	0.04	5E-12		0.37	unit decrease	Illumina [5270624] (imputed)	N
612	chr6_cox_hap2	3622123	3622124	rs2070600	28166215	Hobbs BD	2017-02-06	Nat Genet	Genetic loci associated with chronic obstructive pulmonary disease overlap with loci for lung function and pulmonary fibrosis.	Chronic obstructive pulmonary disease	11,157 European ancestry cases, 36,699 European ancestry controls, 1,142 African American cases, 2,380 African American controls, 199 Korean ancestry cases, 6,741 Korean ancestry controls, 52 Hispanic cases, 548 Hispanic controls.	12,051 European ancestry cases, 11,111 European ancestry controls, 153 Korean ancestry cases, 205 Korean ancestry controls.	6p21.32	AGER	rs2070600-C	0.95	6E-10		1.24	[1.16-1.32]	Affymetrix, Illumina [NR] (imputed)	N
612	chr6_cox_hap2	3622123	3622124	rs2070600	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FEV1/FVC)	48,943 European ancestry individuals	57,176 European ancestry individuals, 38,199 individuals.	6p21.32	AGER	rs2070600-T	0.0634	3E-25		0.14	[0.11-0.17] unit increase	Affymetrix [27624732] (imputed)	N
612	chr6_cox_hap2	3622123	3622124	rs2070600	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	6p21.32	NR	rs2070600-?		3E-22	(AGER)	0.7091	[NR] unit decrease	Illumina [NR]	N
612	chr6_cox_hap2	3622123	3622124	rs2070600	26030696	Cho MH	2015-06-01	Am J Respir Crit Care Med	A Genome-Wide Association Study of Emphysema and Airway Quantitative Imaging Phenotypes.	Percentage gas trapping	3,243 European ancestry chronic obstructive pulmonary disease cases, 901 African American chronic obstructive pulmonary disease cases,  3,062 European ancestry controls, 2,132 African American controls	NA	6p21.32	AGER	rs2070600-T	NR	4E-9	(All)	0.23	[0.15-0.31] unit decrease	Illumina [6900000] (imputed)	N
612	chr6_cox_hap2	3622123	3622124	rs2070600	26030696	Cho MH	2015-06-01	Am J Respir Crit Care Med	A Genome-Wide Association Study of Emphysema and Airway Quantitative Imaging Phenotypes.	Emphysema imaging phenotypes	5,385 European ancestry chronic obstructive pulmonary disease cases, 901 African American chronic obstructive pulmonary disease cases, 3,613 European ancestry controls, 2,132 African American controls	NA	6p21.32	AGER	rs2070600-T	NR	5E-9	(%LAA-950, All)	0.14	[-0.07560-0.35560] unit decrease	Illumina [7600000] (imputed)	N
612	chr6_cox_hap2	3622123	3622124	rs2070600	23284291	Hancock DB	2012-12-20	PLoS Genet	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (smoking interaction)	50,047 European ancestry individuals	NA	6p21.32	AGER	rs2070600-?	NR	1E-21	(FEV1/FVC, Pack-years)			NR [~ 2500000] (imputed)	N
612	chr6_cox_hap2	3622123	3622124	rs2070600	20010835	Hancock DB	2009-12-13	Nat Genet	Meta-analyses of genome-wide association studies identify multiple loci associated with pulmonary function.	Pulmonary function	20,890 European ancestry individuals	16,178 European ancestry individuals	6p21.32	AGER, PPT2	rs2070600-T	0.04	3E-14	(FEV1/FVC)	1.0	[NR] % increase	Affymetrix, Illumina [2534500] (imputed)	N
612	chr6_cox_hap2	3622123	3622124	rs2070600	20010834	Repapi E	2009-12-13	Nat Genet	Genome-wide association study identifies five loci associated with lung function.	Pulmonary function	20,288 European ancestry individuals	up to 54,276 European ancestry individuals	6p21.32	AGER	rs2070600-T	0.06	3E-15	(FEV1/FVC)	0.088	[0.066-0.110] s.d. increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
612	chr6_cox_hap2	3623067	3623068	rs1800624	33766948	Zhu Z	2021-03-25	Eur Respir J	A large-scale genome-wide association analysis of lung function in the Chinese population identifies novel loci and highlights shared genetic etiology with obesity.	Lung function (FEV1/FVC)	100,285 Chinese ancestry individuals	NA	6p21.32		rs1800624-A	0.87	3E-9		0.039	unit increase	Affymetrix [NR] (imputed)	N
612	chr6_cox_hap2	3623122	3623123	rs1800625	26876947	Saito T	2016-02-11	Biol Psychiatry	Pharmacogenomic Study of Clozapine-Induced Agranulocytosis/Granulocytopenia in a Japanese Population.	Clozapine-induced agranulocytosis/granulocytopenia in treatment-resistant schizophrenia	50 Japanese ancestry cases, 2905 Japanese ancestry controls	NA	6p21.32	ZDHHC20P2, HCG25, HCG26, LST1, MICA, FKBPL, AGPAT1, PBX2, NOTCH4, C6orf10, MHC, HLA-X, HCP5, MSH5, C6orf26	rs1800625-G	0.084	3E-9		3.78	[3.34-4.22]	Illumina [522694]	N
612	chr6_cox_hap2	3623122	3623123	rs1800625	26546620	Xu CF	2015-11-06	Clin Cancer Res	HLA-B*57:01 Confers Susceptibility to Pazopanib-Associated Liver Injury in Patients with Cancer.	Response to Pazopanib in cancer (hepatotoxicity)	Up to 844 European ancestry cases, up to 325 Asian ancestry cases, up to 19 cases	Up to 811 European ancestry cases, up to 114 Asian ancestry cases, up to 77 cases	6p21.32	AGER	rs1800625-G	NR	8E-9	(Time to ALT>3 x upper limit of normal event)	1.8	[1.5-2.1]	Illumina [6736730] (imputed)	N
612	chr6_cox_hap2	3624018	3624019	rs201026476	32488134	Auckland K	2020-06-02	Sci Rep	The Human Leukocyte Antigen Locus and Rheumatic Heart Disease Susceptibility in South Asians and Europeans.	Rheumatic heart disease	510 Northern Indian cases, 344 Northern Indian controls, 162 Fijian Indian cases, 147 Fijian Indian controls	150 European ancestry cases, 1,309 European ancestry controls	6p21.32	PBX2	rs201026476-?		3E-10		1.81	[1.51-2.18]	Illumina [6925553] (imputed)	N
612	chr6_cox_hap2	3624083	3624084	rs169504	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	PBX2, XXbac-BPG300A18.13	rs169504-A	NR	4E-9		0.0216001	[0.014-0.029] unit decrease	Affymetrix [319769] (imputed)	N
612	chr6_cox_hap2	3624083	3624084	rs169504	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	PBX2, XXbac-BPG300A18.13	rs169504-A	NR	3E-12		0.0279533	[0.02-0.036] unit increase	Affymetrix [323123] (imputed)	N
612	chr6_cox_hap2	3624083	3624084	rs169504	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Anxiety	at least 23,606 European ancestry cases, at least 113,351 European ancestry controls	624,615 European ancestry cases, 1,310,854 European ancestry controls	6p21.32	PBX2, XXbac, BPG300A18.13	rs169504-C	0.1481	5E-28		0.03352553	[0.027-0.04] unit increase	NR [9417325] (imputed)	N
612	chr6_cox_hap2	3624083	3624084	rs169504	29899525	Klimentidis YC	2018-06-13	Int J Obes (Lond)	Genome-wide association study of habitual physical activity in over 377,000 UK Biobank participants identifies multiple variants including CADM2 and APOE.	Moderate to vigorous physical activity levels	377,234 European ancestry individuals	NA	6p21.32	PBX2	rs169504-C	0.81	5E-11	(model 2)	0.018	unit increase	Affymetrix [11800000] (imputed)	N
612	chr6_cox_hap2	3624083	3624084	rs169504	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p21.32	NR	rs169504-?	NR	5E-9		0.0694	[0.046-0.093] unit increase	Illumina [at least 560000] (imputed)	N
612	chr6_cox_hap2	3624962	3624963	rs204995	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	6p21.32	NR	rs204995-A	0.736056	3E-13		0.0272612	[0.02-0.034] unit increase	Affymetrix [16577424] (imputed)	N
612	chr6_cox_hap2	3625675	3625676	rs204994	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RACGAP1	5,360 Icelandic ancestry individuals	NA	6p21.32		rs204994-T	0.1627	4E-63		0.423554	[0.37-0.47] unit increase	Illumina [7506463] (imputed)	N
612	chr6_cox_hap2	3626258	3626259	rs204993	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Receptor for advanced glycosylation end products levels	21,758 European ancestry individuals	9,173 individuals	6p21.32		rs204993-A	0.74	1E-48		0.1449	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
612	chr6_cox_hap2	3626258	3626259	rs204993	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 142,336 Japanese ancestry controls	NA	6p21.32	PBX2	rs204993-?	NR	6E-9		0.0600478	[0.04-0.08] unit decrease	Illumina [19707525] (imputed)	N
612	chr6_cox_hap2	3626258	3626259	rs204993	21804548	Hirota T	2011-07-31	Nat Genet	Genome-wide association study identifies three new susceptibility loci for adult asthma in the Japanese population.	Asthma	1,532 Japanese ancestry cases, 3,304 Japanese ancestry controls	5,639 Japanese ancestry cases, 24,608 Japanese ancestry controls	6p21.32	PBX2	rs204993-A	0.58	2E-15		1.17	[1.12-1.21]	Illumina [458847]	N
612	chr6_cox_hap2	3628041	3628042	rs2856437	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cervical cancer	6,563 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs2856437-A	0.063203	1E-15		1.3032712	NR	Affymetrix [7846216] (imputed)	N
612	chr6_cox_hap2	3628996	3628997	rs176095	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Atopic dermatitis	2,079 European ancestry cases, 3,867 European ancestry controls	NA	6p21.32	GPSM3	rs176095-G	NR	3E-7		1.3020833	[1.18-1.44]	Affymetrix, Illumina, Perlegen [up to 5493100] (imputed)	N
612	chr6_cox_hap2	3628996	3628997	rs176095	23042114	Hirota T	2012-10-07	Nat Genet	Genome-wide association study identifies eight new susceptibility loci for atopic dermatitis in the Japanese population.	Atopic dermatitis	1,472 Japanese ancestry cases, 7,971 Japanese ancestry controls	1,856 Japanese ancestry cases, 7,021 Japanese ancestry controls	6p21.32	GPSM3	rs176095-T	0.81	8E-20		1.4	[1.30-1.51]	Illumina [606164]	N
612	chr6_cox_hap2	3630633	3630634	rs3134605	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	GPSM3	rs3134605-C	NR	8E-9		0.0195758	[0.013-0.026] unit decrease	Affymetrix [319769] (imputed)	N
612	chr6_cox_hap2	3630633	3630634	rs3134605	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	GPSM3	rs3134605-C	NR	3E-8		0.0188346	[0.012-0.025] unit decrease	Affymetrix [319769] (imputed)	N
612	chr6_cox_hap2	3630633	3630634	rs3134605	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	GPSM3	rs3134605-C	NR	1E-8		0.0196385	[0.013-0.026] unit decrease	Affymetrix [321169] (imputed)	N
612	chr6_cox_hap2	3630633	3630634	rs3134605	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	6p21.32	GPSM3	rs3134605-T	0.7974	7E-17		0.0033	[0.0025-0.0041] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
612	chr6_cox_hap2	3630830	3630831	rs2269420	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Pancreatic cancer	768 White British ancestry cases, 264,559 White British ancestry controls	NA	6p21.32		rs2269420-?	NR	5E-6		550.195	[547.48-552.91]	NR [663102]	N
612	chr6_cox_hap2	3630830	3630831	rs2269420	28031287	Sasayama D	2016-11-26	Hum Mol Genet	Genome-wide quantitative trait loci mapping of the human cerebrospinal fluid proteome.	Cerebrospinal fluid biomarker levels	133 Japanese ancestry individuals.	NA	6p21.32	NR	rs2269420-?	NR	3E-9	(Complement factor B)			Illumina [514227]	N
612	chr6_cox_hap2	3632073	3632074	rs3132940	32534018	Liu X	2020-06-10	Brain Behav Immun	Genetic factors underlying the bidirectional relationship between autoimmune and mental disorders - findings from a Danish population-based study.	Autoimmune traits	1,383 Danish ancestry cases, 62,656 Danish ancestry controls	NA	6p21.32	NR	rs3132940-T	0.15	1E-15		0.62	[0.55-0.70]	NR [7721839] (imputed)	N
612	chr6_cox_hap2	3632073	3632074	rs3132940	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (non-Lofgren's syndrome without extrapulmonary manifestations)	451 Swedish ancestry cases, 2,086 Swedish ancestry controls	NA	6p21.32	GPSM3, NOTCH4, AGER, MICB, NFKBIL1, LTA, NCR3, AIF1, TNXB, CREBL1, FKBPL, PRRT1	rs3132940-A	0.203	7E-6		1.531	[1.282-1.829]	Illumina [118177]	N
612	chr6_cox_hap2	3632107	3632108	rs204990	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Scarlet fever	6,812 European ancestry cases, 113,837 European ancestry controls	NA	6p21.32	NR	rs204990-?	NR	7E-9		0.1298	[0.086-0.173] unit decrease	Illumina [at least 560000] (imputed)	N
612	chr6_cox_hap2	3634425	3634426	rs13215567	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6p21.32	GPSM3, NOTCH4	rs13215567-A	0.049	1E-6	(IGFBP-3 )	0.03	[NR] ng/mL increase	Illumina [899892]	N
612	chr6_cox_hap2	3636121	3636122	rs2071278	23028341	Yang X	2012-09-13	PLoS Genet	Genome-wide association study for serum complement C3 and C4 levels in healthy Chinese subjects.	Complement C3 and C4 levels	1,999 Han Chinese ancestry male individuals	1,496 Han Chinese ancestry male individuals	6p21.32	HLA-DRA	rs2071278-G	0.27	4E-72	(Serum level of C4)	0.13	[0.11-0.15] g/L decrease	Illumina [1940245] (imputed)	N
612	chr6_cox_hap2	3637062	3637063	rs8192575	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	NOTCH4	rs8192575-G	NR	3E-14		0.0413468	[0.031-0.052] unit increase	Affymetrix [319769] (imputed)	N
612	chr6_cox_hap2	3637062	3637063	rs8192575	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	NOTCH4	rs8192575-G	NR	1E-14		0.0418274	[0.031-0.052] unit increase	Affymetrix [319769] (imputed)	N
612	chr6_cox_hap2	3639459	3639460	rs3134942	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.32	NOTCH4, GPSM3	rs3134942-T	0.1076459	1E-16	(EA, MHC class I polypeptide-related sequence A)	0.5791	[0.44-0.71] unit increase	Affymetrix [509946]	N
612	chr6_cox_hap2	3641095	3641096	rs9267822	33941608	Khan A	2021-05-03	J Am Soc Nephrol	Medical Records-Based Genetic Studies of the Complement System.	Complement C4 levels	3,247 European ancestry individuals, 600 African ancestry individuals, 151 East Asian ancestry individuals	NA	6p21.32	C4	rs9267822-C	0.05	6E-7	(AA)	0.64	[0.40-0.87] unit increase	NR [NR] (imputed)	N
612	chr6_cox_hap2	3641095	3641096	rs9267822	33941608	Khan A	2021-05-03	J Am Soc Nephrol	Medical Records-Based Genetic Studies of the Complement System.	Complement C4 levels	3,247 European ancestry individuals, 600 African ancestry individuals, 151 East Asian ancestry individuals	NA	6p21.32	C4	rs9267822-C	0.02	6E-17		0.65	[0.51-0.78] unit increase	NR [NR] (imputed)	N
612	chr6_cox_hap2	3641095	3641096	rs9267822	33941608	Khan A	2021-05-03	J Am Soc Nephrol	Medical Records-Based Genetic Studies of the Complement System.	Complement C4 levels	3,247 European ancestry individuals, 600 African ancestry individuals, 151 East Asian ancestry individuals	NA	6p21.32	C4	rs9267822-C	0.01	7E-9	(EA)	0.61	[0.41-0.80] unit increase	NR [NR] (imputed)	N
612	chr6_cox_hap2	3641762	3641763	rs3132935	23894747	Aberg KA	2013-02-01	JAMA Psychiatry	A comprehensive family-based replication study of schizophrenia genes.	Schizophrenia	11,185 European ancestry cases, 10,768 European ancestry controls	1,262 African American ancestry individuals, 2,740 European ancestry individuals, 2,296 Asian ancestry individuals	6p21.32	NOTCH4	rs3132935-?	0.82	5E-7	(EA)	1.25	[NR]	NR [1085772] (imputed)	N
612	chr6_cox_hap2	3641762	3641763	rs3132935	23894747	Aberg KA	2013-02-01	JAMA Psychiatry	A comprehensive family-based replication study of schizophrenia genes.	Schizophrenia	11,185 European ancestry cases, 10,768 European ancestry controls	1,262 African American ancestry individuals, 2,740 European ancestry individuals, 2,296 Asian ancestry individuals	6p21.32	NOTCH4	rs3132935-?	0.82	3E-7		1.25	[NR]	NR [1085772] (imputed)	N
612	chr6_cox_hap2	3642371	3642372	rs2071277	22694956	Cipriani V	2012-06-13	Hum Mol Genet	Genome-wide association study of age-related macular degeneration identifies associated variants in the TNXB-FKBPL-NOTCH4 region of chromosome 6p21.3.	Age-related macular degeneration	893 European ancestry cases, 2,199 European ancestry controls	1,411 European ancestry cases, 1,431 European ancestry controls	6p21.32	NOTCH4	rs2071277-C	0.219	2E-11		1.3	[1.20-1.41]	Illumina [2272849] (imputed)	N
612	chr6_cox_hap2	3643681	3643682	rs3131296	19571808	Stefansson H	2009-07-01	Nature	Common variants conferring risk of schizophrenia.	Schizophrenia	2,663 European ancestry cases, 13,498 European ancestry controls	10,282 European ancestry cases, 21,093 European ancestry controls	6p21.32	MHC, NOTCH4	rs3131296-G	0.87	2E-10		1.19	[NR]	Illumina [314868]	N
612	chr6_cox_hap2	3643926	3643927	rs9267823	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6p21.32	NOTCH4	rs9267823-C	0.252	3E-12		0.018297182	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
612	chr6_cox_hap2	3644289	3644290	rs138753323	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.32		rs138753323-C	0.02776400000000001	7E-13		1.0961492	[1.06-1.12]	Affymetrix, Illumina [9851866] (imputed)	N
612	chr6_cox_hap2	3644738	3644739	rs2849017	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	6p21.32	NOTCH4	rs2849017-G	0.0713240000000001	2E-10		0.027348002	[0.019-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
612	chr6_cox_hap2	3644738	3644739	rs2849017	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	6p21.32	NOTCH4	rs2849017-G	0.071334	5E-15		0.033472747	[0.025-0.042] unit decrease	Affymetrix [93095623] (imputed)	N
612	chr6_cox_hap2	3645647	3645648	rs3130290	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of saturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	6p21.32		rs3130290-T	0.396568	2E-14		0.0317416	[0.024-0.04] unit decrease	NR [11722792] (imputed)	N
612	chr6_cox_hap2	3646893	3646894	rs206017	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:0_[M+H]1+/Phosphatidylethanolamine_35:0_[M+H]1+/Phosphatidate_37:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	6p21.32		rs206017-G	NR	2E-10		0.0746241	[0.052-0.098] unit decrease	Affymetrix [87696910] (imputed)	N
612	chr6_cox_hap2	3647464	3647465	rs3132947	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Hip circumference variance	346,781 European ancestry individuals	NA	6p21.32	GPSM3	rs3132947-?	NR	5E-11				NR [5554549] (imputed)	N
612	chr6_cox_hap2	3647464	3647465	rs3132947	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Hip circumference	346,781 European ancestry individuals	NA	6p21.32	GPSM3	rs3132947-?	NR	3E-24				NR [5554549] (imputed)	N
612	chr6_cox_hap2	3647464	3647465	rs3132947	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Body mass index variance	346,393 European ancestry individuals	NA	6p21.32	GPSM3	rs3132947-?	NR	2E-13				NR [5554549] (imputed)	N
612	chr6_cox_hap2	3647464	3647465	rs3132947	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Body mass index	346,393 European ancestry individuals	NA	6p21.32	GPSM3	rs3132947-?	NR	9E-15				NR [5554549] (imputed)	N
612	chr6_cox_hap2	3650382	3650383	rs16869834	33941608	Khan A	2021-05-03	J Am Soc Nephrol	Medical Records-Based Genetic Studies of the Complement System.	Complement C4 levels	3,247 European ancestry individuals, 600 African ancestry individuals, 151 East Asian ancestry individuals	NA	6p21.32	C4	rs16869834-A	0.05	8E-20		0.44	[0.36-0.51] unit increase	NR [NR] (imputed)	N
612	chr6_cox_hap2	3650382	3650383	rs16869834	33941608	Khan A	2021-05-03	J Am Soc Nephrol	Medical Records-Based Genetic Studies of the Complement System.	Complement C4 levels	3,247 European ancestry individuals, 600 African ancestry individuals, 151 East Asian ancestry individuals	NA	6p21.32	C4	rs16869834-A	0.05	2E-18	(EA)	0.47	[0.37-0.56] unit increase	NR [NR] (imputed)	N
612	chr6_cox_hap2	3650382	3650383	rs16869834	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs16869834-G	0.047	5E-27	(Complement C4, C4A.C4B.4481.34.2)	0.62	[0.5-0.74] unit decrease	Affymetrix [10572788] (imputed)	N
612	chr6_cox_hap2	3650569	3650570	rs2071286	25030430	Zignego AL	2014-07-17	Genes Immun	Genome-wide association study of hepatitis C virus- and cryoglobulin-related vasculitis.	Mixed cryoglobulinemia vasculitis in chronic hepatitis C infection	356 European ancestry cases, 447 European ancestry controls	92 European ancestry cases, 179 European ancestry controls	6p21.32	NOTCH4	rs2071286-?	0.29	2E-8		2.15	[NR]	Illumina [899641]	N
612	chr6_cox_hap2	3650819	3650820	rs3131294	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	NOTCH4	rs3131294-A	NR	1E-10		0.025777	[0.018-0.034] unit increase	Affymetrix [321016] (imputed)	N
612	chr6_cox_hap2	3650914	3650915	rs206019	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	NOTCH4	rs206019-T	NR	5E-13		0.0300963	[0.022-0.038] unit increase	Affymetrix [319769] (imputed)	N
612	chr6_cox_hap2	3650914	3650915	rs206019	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	NOTCH4	rs206019-T	NR	2E-8		0.0236482	[0.015-0.032] unit increase	Affymetrix [321114] (imputed)	N
612	chr6_cox_hap2	3650914	3650915	rs206019	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	NOTCH4	rs206019-T	NR	2E-9		0.0253993	[0.017-0.034] unit increase	Affymetrix [321169] (imputed)	N
612	chr6_cox_hap2	3651855	3651856	rs206016	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	NOTCH4	rs206016-A	NR	2E-13		0.030587	[0.022-0.039] unit increase	Affymetrix [319769] (imputed)	N
612	chr6_cox_hap2	3652190	3652191	rs41270472	28334935	Raffield LM	2017-05-15	Hum Mol Genet	Genome-wide association study of iron traits and relation to diabetes in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL): potential genomic intersection of iron and glucose regulation?	Iron status biomarkers (iron levels)	12,580 Hispanic/Latino individuals	NA	6p21.32	NOTCH4	rs41270472-A	NR	8E-7		0.286	[0.17-0.4] unit decrease	Illumina [27700000] (imputed)	N
612	chr6_cox_hap2	3655019	3655020	rs404860	21804548	Hirota T	2011-07-31	Nat Genet	Genome-wide association study identifies three new susceptibility loci for adult asthma in the Japanese population.	Asthma	1,532 Japanese ancestry cases, 3,304 Japanese ancestry controls	5,639 Japanese ancestry cases, 24,608 Japanese ancestry controls	6p21.32	NOTCH4	rs404860-A	0.50	4E-23		1.21	[1.16-1.25]	Illumina [458847]	N
612	chr6_cox_hap2	3655379	3655380	rs3134798	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C4A;C4B	5,362 Icelandic ancestry individuals	NA	6p21.32		rs3134798-G	0.3666	1E-47		0.277923	[0.24-0.32] unit increase	Illumina [7506463] (imputed)	N
612	chr6_cox_hap2	3656917	3656918	rs438475	26503763	Song J	2015-10-27	Mol Psychiatry	Genome-wide association study identifies SESTD1 as a novel risk gene for lithium-responsive bipolar disorder.	Objective response to lithium treatment in bipolar disorder	323 European ancestry responder cases, 853 European ancestry non-responder cases	NA	6p21.32	NOTCH4	rs438475-A	0.12	2E-6		2.04	[NR]	Affymetrix, Illumina [> 8000000] (imputed)	N
612	chr6_cox_hap2	3657544	3657545	rs2256594	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (glucocorticoids)	13,102 East Asian ancestry cases, 165,624 East Asian ancestry controls	NA	6p21.32		rs2256594-G	0.381444507	1E-9		0.081218176	[0.055-0.107] unit decrease	Illumina [13429980] (imputed)	N
612	chr6_cox_hap2	3658309	3658310	rs8192589	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	NOTCH4	rs8192589-T	NR	7E-14		0.0321787	[0.024-0.041] unit increase	Affymetrix [323123] (imputed)	N
612	chr6_cox_hap2	3658394	3658395	rs431722	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Joint mobility (Beighton score)	64,143 European ancestry individuals	NA	6p21.32	NOTCH4	rs431722-?	NR	2E-12		0.08	[0.102-0.058] unit decrease	Illumina [12039492] (imputed)	N
612	chr6_cox_hap2	3658455	3658456	rs8192590	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	6p21.32	PRRC2A	rs8192590-C	0.8421	1E-8	(S1P d16:1)	0.1004	[0.066-0.135] unit increase	Illumina [~ 47000000] (imputed)	N
612	chr6_cox_hap2	3659055	3659056	rs422951	32771030	Tangtanatakul P	2020-08-08	Arthritis Res Ther	Meta-analysis of genome-wide association study identifies FBN2 as a novel locus associated with systemic lupus erythematosus in Thai population.	Systemic lupus erythematosus	487 Thai cases, 1,606 Thai controls	405 Thai cases, 1,590 Thai controls	6p21.32	NOTCH4	rs422951-G	0.36	7E-7		1.3345	[NR]	Illumina [421909] (imputed)	N
612	chr6_cox_hap2	3659055	3659056	rs422951	25802187	Jiang DK	2015-04-28	Hepatology	Genetic variants in five novel loci including CFB and CD40 predispose to chronic hepatitis B.	Chronic hepatitis B infection	2,514 Chinese ancestry cases, 1,130 Chinese ancestry controls	6,600 Chinese ancestry cases, 8,127 Chinese ancestry controls	6p21.32	NOTCH4	rs422951-G	0.81	5E-16		1.27	[1.20-1.35]	Illumina [3680900] (imputed)	N
612	chr6_cox_hap2	3659312	3659313	rs520692	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling worry	372,869 European ancestry individuals	NA	6p21.32	C4A	rs520692-T	0.289258	2E-10		6.342	unit decrease	NR [10847151] (imputed)	N
612	chr6_cox_hap2	3659495	3659496	rs8192585	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		NOTCH4	rs8192585-?	NR	3E-10	(male)	2.46406	[NR] unit decrease	Affymetrix [NR] (imputed)	N
612	chr6_cox_hap2	3659495	3659496	rs8192585	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		NOTCH4	rs8192585-?	NR	2E-15		2.03144	[NR] unit decrease	Affymetrix [NR] (imputed)	N
612	chr6_cox_hap2	3659704	3659705	rs415929	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.32		rs415929-T	0.711	3E-23				Affymetrix [10369434] (imputed)	N
612	chr6_cox_hap2	3659704	3659705	rs415929	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	6p21.32	C4A	rs415929-T	0.290043	4E-8		5.51	z score decrease	NR [10847151] (imputed)	N
612	chr6_cox_hap2	3660697	3660698	rs3132946	23583980	Fingerlin TE	2013-04-14	Nat Genet	Genome-wide association study identifies multiple susceptibility loci for pulmonary fibrosis.	Interstitial lung disease	1,161 European ancestry cases, 4,683 European ancestry controls	876 European ancestry cases, 1,890 European ancestry controls	6p21.32	NR	rs3132946-A	0.12	8E-6		1.38	[1.21-1.57]	Illumina [439828]	N
612	chr6_cox_hap2	3661075	3661076	rs443198	21779181	Gorlova O	2011-07-14	PLoS Genet	Identification of novel genetic markers associated with clinical phenotypes of systemic sclerosis through a genome-wide association strategy.	Systemic sclerosis	2,296 European ancestry cases, 5,172 European ancestry controls	3,175 European ancestry cases, 4,210 European ancestry controls	6p21.32	NOTCH4	rs443198-?	0.63	9E-21	(ACA positive)	1.82	[1.59-2.04]	Illumina [NR] (imputed)	N
612	chr6_cox_hap2	3661289	3661290	rs3134931	23620142	Reiner AP	2013-04-24	Hum Mol Genet	Genome-wide and gene-centric analyses of circulating myeloperoxidase levels in the charge and care consortia.	Circulating myeloperoxidase levels (serum)	9,305 European ancestry individuals		6p21.32	HLA, NOTCH4, C2	rs3134931-T	0.73	1E-8		0.05	[0.030-0.070] unit decrease	Affymetrix, Illumina [2397181]	N
612	chr6_cox_hap2	3661710	3661711	rs434841	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	NOTCH4	rs434841-A	NR	4E-8		0.0169017	[0.011-0.023] unit decrease	Affymetrix [319769] (imputed)	N
612	chr6_cox_hap2	3661832	3661833	rs149361718	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.32	NR	rs149361718-A	0.01394	1E-10	(KRT10)	0.7834	NR unit increase	Illumina [1671387] (imputed)	N
612	chr6_cox_hap2	3662008	3662009	rs3830041	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	150,068 East Asian ancestry individuals	NA	6p21.32		rs3830041-T	0.185228	9E-25		0.0457917	[0.037-0.055] unit increase	Illumina [13478956] (imputed)	N
612	chr6_cox_hap2	3662008	3662009	rs3830041	31826910	Lu Y	2019-12-11	Cancer Epidemiol Biomarkers Prev	Identification of novel loci and new risk variant in known loci for colorectal cancer risk in East Asians.	Colorectal cancer	23,572 East Asian ancestry cases, 48,700 East Asian ancestry controls	58,131 European ancestry cases, 67,347 European ancestry controls	6p21.32		rs3830041-T	0.14	4E-9	(East Asian)	1.15	[1.10-1.21]	Affymetrix, Illumina [up to 47000000] (imputed)	N
612	chr6_cox_hap2	3662008	3662009	rs3830041	30529582	Lu Y	2018-12-06	Gastroenterology	Large-scale Genome-wide Association Study of East Asians Identifies Loci Associated With Risk for Colorectal Cancer.	Colorectal cancer	22,775 East Asian ancestry cases, 47,731 East Asian ancestry controls	NA	6p21.32	NOTCH4	rs3830041-T	0.14	2E-8		1.16	[1.10-1.21]	Affymetrix, Illumina [up to 10700000] (imputed)	N
612	chr6_cox_hap2	3662126	3662127	rs375244	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p21.32	NOTCH4	rs375244-A	0.28	3E-6	(Turkish)	1.57	[1.30-1.90]	Illumina [up to 547389]	N
612	chr6_cox_hap2	3662405	3662406	rs367398	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p21.32		rs367398-G	0.694	2E-11				Affymetrix [10369434] (imputed)	N
612	chr6_cox_hap2	3662892	3662893	rs16869875	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	Systemic lupus erythematosus	1,639 East Asian ancestry cases, 2,410 East Asian ancestry controls	NA			rs16869875-T	NR	2E-16		0.4377	[0.33-0.54] unit increase	Illumina [NR] (imputed)	N
612	chr6_cox_hap2	3663006	3663007	rs3096702	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	6p21.32	NR	rs3096702-A	0.38	1E-11		1.06	[1.04-1.07]	Illumina [20370935] (imputed)	N
612	chr6_cox_hap2	3663006	3663007	rs3096702	23535732	Eeles RA	2013-04-01	Nat Genet	Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array.	Prostate cancer	11,085 European ancestry cases, 11,463 European ancestry controls	19,662 European ancestry cases, 19,715 European ancestry controls	6p21.32	CYP21A2, DOM3Z, FKBPL, HLA-DRB6, HCG23, LOC10029, ATF6B, LOC100293534, AGER, LOC100507547, MIR1236, PPT2, PPT2-EGF, HLA-DRA, PPT2-EGFL8, RNF5, RNF5P1, CFB, RDBP, TNXA, TNXB, HLA-DQB1, NOTCH4, SKIV2L, STK19, GPSM3, PBX2, LOC10050, EGFL8, AGPAT1, C2, C4A, PRRT1, BTNL2, C4B, HLA-DRB5, C6orf10, HLA-DRB1, CYP21A1P, HLA-DQA1	rs3096702-A	0.4	5E-9		1.07	[1.04-1.10]	Illumina [~ 2600000] (imputed)	N
612	chr6_cox_hap2	3665268	3665269	rs17208153	33941608	Khan A	2021-05-03	J Am Soc Nephrol	Medical Records-Based Genetic Studies of the Complement System.	Complement C4 levels	3,247 European ancestry individuals, 600 African ancestry individuals, 151 East Asian ancestry individuals	NA	6p21.32	C4	rs17208153-C	0.11	2E-11		0.24	[0.18-0.30] unit increase	NR [NR] (imputed)	N
612	chr6_cox_hap2	3665268	3665269	rs17208153	33941608	Khan A	2021-05-03	J Am Soc Nephrol	Medical Records-Based Genetic Studies of the Complement System.	Complement C4 levels	3,247 European ancestry individuals, 600 African ancestry individuals, 151 East Asian ancestry individuals	NA	6p21.32	C4	rs17208153-C	0.08	7E-11	(EA)	0.28	[0.20-0.35] unit increase	NR [NR] (imputed)	N
612	chr6_cox_hap2	3665924	3665925	rs9267853	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p21.32	NR	rs9267853-?	NR	3E-25		0.131	[0.11-0.16] unit increase	Illumina [at least 560000] (imputed)	N
612	chr6_cox_hap2	3667892	3667893	rs3132948	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Bronchiectasis	2,888 European ancestry cases, 440,263 European ancestry controls, 241 East Asian ancestry cases, 161,803 East Asian ancestry controls	NA	6p21.32		rs3132948-G	NR	7E-9		0.1526	[0.1-0.2] unit decrease	Affymetrix, Illumina [25839694] (imputed)	N
612	chr6_cox_hap2	3669815	3669816	rs377763	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Prostate cancer	7,438 White British ancestry cases, 118,206 White British ancestry controls	NA	6p21.32		rs377763-?	NR	9E-6		0.908716	[0.87-0.95]	NR [680312]	N
612	chr6_cox_hap2	3669815	3669816	rs377763	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling nervous	373,121 European ancestry individuals	NA	6p21.32	NR	rs377763-A	0.216145	1E-10		6.43	z score decrease	NR [10847151] (imputed)	N
613	chr6_cox_hap2	3671926	3671927	rs6941515	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on myeloid Dendritic Cell	2,872 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs6941515-T	0.5683199999999999	8E-12		0.2226	[0.16-0.29] unit decrease	Illumina [17926605] (imputed)	N
613	chr6_cox_hap2	3672201	3672202	rs3096692	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	NOTCH4	rs3096692-G	NR	3E-12		0.0293978	[0.021-0.038] unit decrease	Affymetrix [323858] (imputed)	N
613	chr6_cox_hap2	3672201	3672202	rs3096692	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	NOTCH4	rs3096692-G	NR	2E-10		0.0269591	[0.019-0.035] unit decrease	Affymetrix [127266] (imputed)	N
613	chr6_cox_hap2	3672265	3672266	rs443863	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.32	NR	rs443863-?	NR	6E-9				Affymetrix [~ 8270000] (imputed)	N
613	chr6_cox_hap2	3675480	3675481	rs9279532	31577861	Dai J	2019-10-31	Int J Cancer	Genome-wide association study of INDELs identified four novel susceptibility loci associated with lung cancer risk.	Lung cancer	20,871 European ancestry cases, 15,971 European ancestry controls, 2,331 Chinese ancestry cases, 3,077 Chinese ancestry controls	NA	6p21.32	NOTCH4	rs9279532-D	0.12	3E-7		1.11	[1.07-0.94]	Illumina [484196]	N
613	chr6_cox_hap2	3675541	3675542	rs28732180	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p21.32	NR	rs28732180-?	NR	1E-15		0.1765	[0.13-0.22] unit increase	Illumina [at least 560000] (imputed)	N
613	chr6_cox_hap2	3675704	3675705	rs549182	24837172	Juyal G	2014-05-16	Gut	Genome-wide association scan in north Indians reveals three novel HLA-independent risk loci for ulcerative colitis.	Ulcerative colitis	603 North Indian ancestry cases, 622 North Indian ancestry controls	733 North Indian ancestry cases, 1,148 North Indian ancestry controls	6p21.32	NOTCH4	rs549182-A	0.11	8E-10		1.59	[1.37-1.85]	Illumina [480391]	N
613	chr6_cox_hap2	3675769	3675770	rs9267911	23266558	Yamazaki K	2012-12-21	Gastroenterology	A genome-wide association study identifies 2 susceptibility Loci for Crohn's disease in a Japanese population.	Crohn's disease	372 Japanese ancestry cases,3,389 Japanese ancestry controls	Up to 1,151 Japanese ancestry cases, up to 15,800 Japanese ancestry controls	6p21.32	PBX2, NOTCH4	rs9267911-T	0.479	3E-7		1.5	[1.29-1.76]	Illumina [4929034] (imputed)	N
613	chr6_cox_hap2	3677159	3677160	rs3134938	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p21.32	NOTCH4	rs3134938-C	0.832	8E-7		0.076	[0.047-0.105] unit decrease	Affymetrix, Illumina [7374092] (imputed)	N
613	chr6_cox_hap2	3677210	3677211	rs3134937	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	NOTCH4	rs3134937-T	NR	7E-9		0.0212317	[0.014-0.028] unit decrease	Affymetrix [323858] (imputed)	N
613	chr6_cox_hap2	3677852	3677853	rs3130304	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	NOTCH4	rs3130304-A	NR	4E-8		0.0203511	[0.013-0.028] unit increase	Affymetrix [323123] (imputed)	N
613	chr6_cox_hap2	3678064	3678065	rs416352	30294719	Zeng Y	2018-08-24	JAMA Netw Open	Sex Differences in Genetic Associations With Longevity.	Longevity	564 Han Chinese ancestry male centenarian cases, 1,614 Han Chinese ancestry female centenarian cases, 773 Han Chinese ancestry male middle-aged controls, 1,526 Han Chinese ancestry female middle-aged controls	NA	6p21.32	NOTCH4	rs416352-?	0.51	8E-6	(female)	1.261	[1.14-1.40]	Illumina [5595657] (imputed)	N
613	chr6_cox_hap2	3678995	3678996	rs424232	23936387	Ostensson M	2013-08-02	PLoS One	A possible mechanism behind autoimmune disorders discovered by genome-wide linkage and association analysis in celiac disease.	Celiac disease	206 European ancestry trios	NA	6p21.32	HLA	rs424232-C		5E-21				Illumina [944512] (imputed)	N
613	chr6_cox_hap2	3679916	3679917	rs186298790	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	6p21.32	NR	rs186298790-?	NR	4E-11	(MIC-A)	3.61094	[2.54-4.68] unit increase	Illumina [11901634] (imputed)	N
613	chr6_cox_hap2	3679997	3679998	rs570559246	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Treatment or medication use - sulfasalazine (UKB data field 20003_1140909702)	866 European ancestry cases, 455,410 European ancestry controls	NA	6p21.32		rs570559246-C	0.003586	7E-10		3.33	[2.27-4.39] unit increase	NR [11842647] (imputed)	N
613	chr6_cox_hap2	3680122	3680123	rs380911	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.32	Intergenic	rs380911-?		9E-6		1.04	[1.02-1.06]	Illumina [7645193] (imputed)	N
613	chr6_cox_hap2	3680122	3680123	rs380911	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.32	Intergenic	rs380911-?		3E-6		1.51	[1.27-1.80]	Illumina [7645193] (imputed)	N
613	chr6_cox_hap2	3680443	3680445	rs28993469	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	6p21.32		rs28993469-C	0.261024	4E-12		0.019322034	[0.014-0.025] unit increase	Affymetrix [93095623] (imputed)	N
613	chr6_cox_hap2	3680532	3680533	rs507778	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	6p21.32	intergenic	rs507778-T	0.3256	1E-24		0.03915988	[0.032-0.047] unit decrease	Affymetrix [~ 2500000] (imputed)	N
613	chr6_cox_hap2	3680532	3680533	rs507778	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	6p21.32	intergenic	rs507778-T	0.3257	2E-29		0.04307319	[0.036-0.051] unit decrease	Affymetrix [~ 2500000] (imputed)	N
613	chr6_cox_hap2	3681018	3681019	rs28732181	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Strep throat	52,487 European ancestry cases, 22,017 European ancestry controls	NA	6p21.32	NR	rs28732181-?	NR	6E-6		0.0381	[0.022-0.055] unit decrease	Illumina [at least 560000] (imputed)	N
613	chr6_cox_hap2	3681466	3681467	rs419132	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	Triglycerides	up to 62,166 European ancestry individuals	NA	6p21.32	HLA-area	rs419132-G	0.2	5E-12		0.056	[0.04-0.072] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
613	chr6_cox_hap2	3681752	3681753	rs412657	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6p21.32		rs412657-G	0.377896	3E-19		0.021442138	[0.017-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
613	chr6_cox_hap2	3681984	3681985	rs411326	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	6p21.32		rs411326-C	0.728	4E-13				Affymetrix [10369434] (imputed)	N
613	chr6_cox_hap2	3683364	3683365	rs9267951	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.32		rs9267951-C	0.729	9E-29				Affymetrix [10369434] (imputed)	N
613	chr6_cox_hap2	3683364	3683365	rs9267951	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p21.32		rs9267951-C	0.729	5E-17				Affymetrix [10369434] (imputed)	N
613	chr6_cox_hap2	3683403	3683404	rs9267952	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.32		rs9267952-G	0.573	6E-23				Affymetrix [10369434] (imputed)	N
613	chr6_cox_hap2	3683403	3683404	rs9267952	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	XXbac-BPG154L12.4	rs9267952-A	NR	5E-14		0.0214967	[0.016-0.027] unit increase	Affymetrix [319769] (imputed)	N
613	chr6_cox_hap2	3683403	3683404	rs9267952	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	XXbac-BPG154L12.4	rs9267952-A	NR	2E-13		0.0209537	[0.015-0.027] unit increase	Affymetrix [319769] (imputed)	N
613	chr6_cox_hap2	3683403	3683404	rs9267952	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	XXbac-BPG154L12.4	rs9267952-A	NR	5E-12		0.0199663	[0.014-0.026] unit increase	Affymetrix [321169] (imputed)	N
613	chr6_cox_hap2	3683415	3683415	rs35161164	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	XXbac-BPG154L12.4	rs35161164-CG	NR	1E-11		0.0195502	[0.014-0.025] unit decrease	Affymetrix [321016] (imputed)	N
613	chr6_cox_hap2	3683415	3683415	rs35161164	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	XXbac-BPG154L12.4	rs35161164-CG	NR	5E-15		0.0245369	[0.018-0.031] unit decrease	Affymetrix [323123] (imputed)	N
613	chr6_cox_hap2	3683566	3683567	rs10456404	33119750	Vergara C	2020-10-29	J Infect Dis	A multi-ancestry sex stratified genome-wide association study of spontaneous clearance of hepatitis C virus.	Hepatitis C (spontaneous viral clearance)	239 African ancestry male cases, 1,184 African ancestry male controls, 206 African ancestry female cases, 572 African ancestry female controls, 489 European ancestry male cases, 703 European ancestry male controls, 212 European ancestry female cases, 332 European ancestry female controls, 91 Hispanic male cases, 197 Hispanic male controls, 82 Hispanic female cases, 116 Hispanic female controls	NA	6p21.32	NR	rs10456404-C	0.13	2E-7	(female)	1.89	[NR]	Illumina [5730693] (imputed)	N
613	chr6_cox_hap2	3683761	3683762	rs9267954	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	XXbac-BPG154L12.4	rs9267954-T	NR	2E-12		0.022421	[0.016-0.029] unit increase	Affymetrix [319769] (imputed)	N
613	chr6_cox_hap2	3683761	3683762	rs9267954	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	XXbac-BPG154L12.4	rs9267954-T	NR	3E-12		0.0221835	[0.016-0.028] unit increase	Affymetrix [319769] (imputed)	N
613	chr6_cox_hap2	3683761	3683762	rs9267954	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	XXbac-BPG154L12.4	rs9267954-T	NR	2E-11		0.0234019	[0.017-0.03] unit decrease	Affymetrix [323123] (imputed)	N
613	chr6_cox_hap2	3683761	3683762	rs9267954	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	XXbac-BPG154L12.4	rs9267954-T	NR	1E-11		0.0218043	[0.015-0.028] unit increase	Affymetrix [321169] (imputed)	N
613	chr6_cox_hap2	3683919	3683920	rs454748	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	XXbac-BPG154L12.4	rs454748-A	NR	3E-11		0.0188397	[0.013-0.024] unit decrease	Affymetrix [321016] (imputed)	N
613	chr6_cox_hap2	3683919	3683920	rs454748	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	XXbac-BPG154L12.4	rs454748-A	NR	5E-15		0.0242475	[0.018-0.03] unit decrease	Affymetrix [323123] (imputed)	N
613	chr6_cox_hap2	3687801	3687802	rs6936204	25096241	Keller MF	2014-08-05	Hum Mol Genet	Trans-ethnic meta-analysis of white blood cell phenotypes.	Neutrophil count	9,802 Japanese ancestry individuals, 16,550 European ancestry individuals, 7,391 African American individuals	NA	6p21.32	AK123889	rs6936204-C	0.585	6E-6	(EA)	0.02	[0.012-0.028] unit increase	Illumina [NR] (imputed)	N
613	chr6_cox_hap2	3687801	3687802	rs6936204	25096241	Keller MF	2014-08-05	Hum Mol Genet	Trans-ethnic meta-analysis of white blood cell phenotypes.	Neutrophil count	9,802 Japanese ancestry individuals, 16,550 European ancestry individuals, 7,391 African American individuals	NA	6p21.32	AK123889	rs6936204-?	NR	3E-8		0.0196	[0.013-0.026] unit decrease	Illumina [NR] (imputed)	N
613	chr6_cox_hap2	3687941	3687942	rs9267972	24925725	Chung SA	2014-06-12	J Am Soc Nephrol	Lupus nephritis susceptibility loci in women with systemic lupus erythematosus.	Lupus nephritis in systemic lupus erythematosus	588 European ancestry cases, 1,412 European ancestry controls	NA	6p21.32	C6orf10, NOTCh4	rs9267972-A	NR	2E-6	(Dominant)	1.85	[1.46,2.33]	Affymetrix, Illumina [1621689] (imputed)	N
613	chr6_cox_hap2	3688122	3688123	rs3115574	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p21.32	NR	rs3115574-?	NR	2E-13		0.0942	[0.069-0.119] unit increase	Illumina [at least 560000] (imputed)	N
613	chr6_cox_hap2	3688555	3688556	rs2894240	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	XXbac-BPG154L12.4	rs2894240-A	NR	5E-12		0.0197637	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
613	chr6_cox_hap2	3688555	3688556	rs2894240	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	XXbac-BPG154L12.4	rs2894240-A	NR	2E-11		0.0191638	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
613	chr6_cox_hap2	3688555	3688556	rs2894240	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	XXbac-BPG154L12.4	rs2894240-A	NR	4E-11		0.0191969	[0.014-0.025] unit increase	Affymetrix [321169] (imputed)	N
613	chr6_cox_hap2	3689552	3689553	rs3115573	20595679	Feehally J	2010-07-01	J Am Soc Nephrol	HLA has strongest association with IgA nephropathy in genome-wide analysis.	Nephropathy	187 European ancestry child cases, 244 European ancestry cases, 4,980 European ancestry controls	NA	6p21.32	intergenic	rs3115573-?	NR	1E-9		1.62	[1.39-1.90]	Illumina [286200]	N
613	chr6_cox_hap2	3689698	3689699	rs9296015	21779181	Gorlova O	2011-07-14	PLoS Genet	Identification of novel genetic markers associated with clinical phenotypes of systemic sclerosis through a genome-wide association strategy.	Systemic sclerosis	2,296 European ancestry cases, 5,172 European ancestry controls	3,175 European ancestry cases, 4,210 European ancestry controls	6p21.32	NOTCH4	rs9296015-?	0.81	1E-8	(ATA positive)	1.85	[1.49-2.27]	Illumina [NR] (imputed)	N
613	chr6_cox_hap2	3689698	3689699	rs9296015	21505073	Terao C	2011-04-19	Hum Mol Genet	The human AIRE gene at chromosome 21q22 is a genetic determinant for the predisposition to rheumatoid arthritis in Japanese population.	Rheumatoid arthritis	1,247 Japanese ancestry cases, 1,486 Japanese ancestry controls	4,168 Japanese ancestry cases, 5,003 Japanese ancestry controls	6p21.32	HLA locus	rs9296015-?	NR	2E-38				Illumina [241523]	N
613	chr6_cox_hap2	3692261	3692262	rs9267995	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	XXbac-BPG154L12.4	rs9267995-G	NR	2E-9		0.0171285	[0.012-0.023] unit decrease	Affymetrix [321114] (imputed)	N
613	chr6_cox_hap2	3692261	3692262	rs9267995	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	XXbac-BPG154L12.4	rs9267995-G	NR	1E-21		0.027192	[0.022-0.033] unit decrease	Affymetrix [321169] (imputed)	N
613	chr6_cox_hap2	3692261	3692262	rs9267995	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	6p21.32	NR	rs9267995-A	0.548939	3E-14		0.0512585	[0.038-0.065] unit decrease	Affymetrix [17914406] (imputed)	N
613	chr6_cox_hap2	3692277	3692278	rs9296018	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.32		rs9296018-A	0.81	6E-10				Affymetrix [10369434] (imputed)	N
613	chr6_cox_hap2	3693255	3693256	rs139197261	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6p21.32	XXbac-BPG154L12.4	rs139197261-G	0.015037	2E-10		0.05895812	[0.041-0.077] unit decrease	Affymetrix [93095623] (imputed)	N
613	chr6_cox_hap2	3693997	3693998	rs3130320	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	XXbac-BPG154L12.4	rs3130320-T	NR	2E-25		0.030089	[0.024-0.036] unit decrease	Affymetrix [319769] (imputed)	N
613	chr6_cox_hap2	3693997	3693998	rs3130320	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	XXbac-BPG154L12.4	rs3130320-T	NR	1E-15		0.0257005	[0.019-0.032] unit decrease	Affymetrix [323858] (imputed)	N
613	chr6_cox_hap2	3693997	3693998	rs3130320	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	XXbac-BPG154L12.4	rs3130320-T	NR	5E-24		0.0292129	[0.024-0.035] unit decrease	Affymetrix [319769] (imputed)	N
613	chr6_cox_hap2	3693997	3693998	rs3130320	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	XXbac-BPG154L12.4	rs3130320-T	NR	6E-14		0.0240661	[0.018-0.03] unit decrease	Affymetrix [127266] (imputed)	N
613	chr6_cox_hap2	3693997	3693998	rs3130320	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	XXbac-BPG154L12.4	rs3130320-T	NR	7E-18		0.0248771	[0.019-0.031] unit increase	Affymetrix [321016] (imputed)	N
613	chr6_cox_hap2	3693997	3693998	rs3130320	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	XXbac-BPG154L12.4	rs3130320-T	NR	3E-23		0.0312285	[0.025-0.037] unit increase	Affymetrix [323123] (imputed)	N
613	chr6_cox_hap2	3693997	3693998	rs3130320	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.32	NOTCH4, C6orf10	rs3130320-C	0.6281	7E-8	(EA)	0.0224	[0.014-0.03] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
613	chr6_cox_hap2	3693997	3693998	rs3130320	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.32	BTNL2	rs3130320-C	0.6281	6E-6	(EA, men)	0.0276	[0.016-0.04] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
613	chr6_cox_hap2	3693997	3693998	rs3130320	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6p21.32	BTNL2	rs3130320-C	0.6281	6E-9	(EA)	0.0271	[0.018-0.036] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
613	chr6_cox_hap2	3693997	3693998	rs3130320	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6p21.32	BTNL2	rs3130320-C	0.6267	9E-6	(EA, men)	0.0304	[0.017-0.044] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
613	chr6_cox_hap2	3693997	3693998	rs3130320	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.32	NOTCH4, C6orf10	rs3130320-?	0.6281	5E-8	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
613	chr6_cox_hap2	3693997	3693998	rs3130320	21408207	Chung SA	2011-03-03	PLoS Genet	Differential genetic associations for systemic lupus erythematosus based on anti-dsDNA autoantibody production.	Systemic lupus erythematosus	811 anti-dsDNA positive European ancestry cases, 906 anti-dsDNA negative European ancestry cases, 4,813 European ancestry controls	NA	6p21.32	NOTCH4, C6orf10	rs3130320-T	0.39	3E-6	(case-only)	1.39	[1.21-1.60]	Illumina [421318] (imputed)	N
613	chr6_cox_hap2	3697094	3697095	rs112845108	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	XXbac-BPG154L12.4	rs112845108-T	NR	3E-8		0.0203101	[0.013-0.027] unit increase	Affymetrix [323123] (imputed)	N
613	chr6_cox_hap2	3697222	3697223	rs9268026	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IGF2R	5,361 Icelandic ancestry individuals	NA	6p21.32		rs9268026-G	0.07788	3E-13		0.252335	[0.18-0.32] unit increase	Illumina [7506463] (imputed)	N
613	chr6_cox_hap2	3699980	3699981	rs3132969	29534301	Nishida N	2018-03-13	Hepatology	Key HLA-DRB1-DQB1 haplotypes and role of the BTNL2 gene for response to a hepatitis B vaccine.	Response to hepatitis B vaccine	107 Japanese ancestry low responder individuals, 351 Japanese ancestry intermediate responder individuals, 735 Japanese ancestry high responder individuals	NA	6p21.32	OXA1L	rs3132969-?		2E-6		0.147	unit decrease	Affymetrix [427664]	N
613	chr6_cox_hap2	3701093	3701094	rs3132972	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Perceived unattractiveness to mosquitoes	16,576 European ancestry individuals	NA	6p21.32	intergenic	rs3132972-G	NR	2E-6		0.114743	[0.067-0.162] unit decrease	Illumina [7433384] (imputed)	N
613	chr6_cox_hap2	3701093	3701094	rs3132972	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.32	Intergenic	rs3132972-G	NR	8E-9		0.0190698	[0.013-0.026] unit decrease	Illumina [13520550] (imputed)	N
613	chr6_cox_hap2	3703390	3703391	rs9268072	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Hepatitis B	1,425 European ancestry cases, 218,180 European ancestry controls	NA	6p21.32	NR	rs9268072-?	NR	1E-6		0.2518	[0.15-0.36] unit increase	Illumina [at least 560000] (imputed)	N
613	chr6_cox_hap2	3714824	3714824	rs200663261	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cirrhosis	122 European ancestry cases, 347,284 European ancestry controls, 2,551 East Asian ancestry cases, 176,175 East Asian ancestry controls	NA	6p21.32		rs200663261-CTACA	NR	2E-11		0.1931	[0.14-0.25] unit increase	Affymetrix, Illumina [20457790] (imputed)	N
613	chr6_cox_hap2	3715370	3715371	rs3130340	18445777	Styrkarsdottir U	2008-04-29	N Engl J Med	Multiple genetic loci for bone mineral density and fractures.	Bone mineral density (spine)	5,861 European ancestry individuals	7,925 European ancestry individuals	6p21.32	MHC, C6orf10	rs3130340-T	0.79	1E-7		0.1	[0.06-0.13] s.d. decrease	Illumina [301019]	N
613	chr6_cox_hap2	3717788	3717789	rs145568234	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Ulcerative colitis	5,371 European ancestry cases, 412,561 European ancestry controls, 314 East Asian ancestry cases, 178,375 East Asian ancestry controls	NA	6p21.32		rs145568234-G	NR	5E-35		1.1793	[0.99-1.37] unit increase	Affymetrix, Illumina [25840981] (imputed)	N
613	chr6_cox_hap2	3724995	3724995	rs9281714	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs9281714-T	0.974	2E-6		1.419	[1.28-1.56]	Illumina [11270530] (imputed)	N
613	chr6_cox_hap2	3726292	3726293	rs184614409	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	6p21.32	NR	rs184614409-?	NR	8E-10		6.14	NR z score decrease	Illumina [at least 830937] (imputed)	N
613	chr6_cox_hap2	3728346	3728347	rs926070	24292274	Speedy HE	2013-12-01	Nat Genet	A genome-wide association study identifies multiple susceptibility loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	1,739 European ancestry cases, 5,199 European ancestry controls	1,144 European ancestry cases, 3,151 European ancestry controls	6p21.32	HLA	rs926070-A	0.66	4E-8		1.27	[NR]	Illumina [450000] (imputed)	N
613	chr6_cox_hap2	3732029	3732030	rs7775397	33909500	Moll M	2021-04-28	Am J Physiol Lung Cell Mol Physiol	A Systematic Analysis of Protein-altering Exonic Variants in Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease	up to 31,465 European ancestry cases, up to 203,688 European ancestry controls, up to 1,413 African ancestry cases, up to 6,080 African ancestry controls, up to 287 East Asian ancestry cases, up to 7,484 East Asian ancestry controls, up to 61 Hispanic cases, up to 613 Hispanic controls	NA	6p21.32	C6orf10	rs7775397-G	0.13	3E-13		1.12	[1.08 -1.15]	Illumina [at least 109036]	N
613	chr6_cox_hap2	3732029	3732030	rs7775397	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p21.32	C6orf10	rs7775397-G		1E-35		0.042	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
613	chr6_cox_hap2	3732029	3732030	rs7775397	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.32	c6orf10	rs7775397-G	0.1139	5E-71		3.83	[NR]	Illumina [242824]	N
613	chr6_cox_hap2	3736659	3736660	rs114355928	32534018	Liu X	2020-06-10	Brain Behav Immun	Genetic factors underlying the bidirectional relationship between autoimmune and mental disorders - findings from a Danish population-based study.	Autoimmune traits	1,383 Danish ancestry cases, 62,656 Danish ancestry controls	NA	6p21.32	NR	rs114355928-T	0.018	2E-8		2.02	[1.62-2.53]	NR [7721839] (imputed)	N
613	chr6_cox_hap2	3737088	3737089	rs9268155	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	6p21.32	NR	rs9268155-?	NR	1E-10		0.073	[0.051-0.095] unit decrease	Illumina [at least 560000] (imputed)	N
613	chr6_cox_hap2	3742956	3742957	rs56036302	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Sjogren's syndrome	303 East Asian ancestry cases, 175,599 East Asian ancestry controls	NA	6p21.32		rs56036302-T	0.200590293	6E-10		0.6675887	[0.46-0.88] unit increase	Illumina [13429612] (imputed)	N
613	chr6_cox_hap2	3742956	3742957	rs56036302	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Autoimmune hepatitis	85 East Asian ancestry cases, 166,529 East Asian ancestry controls	NA	6p21.32		rs56036302-T	0.200204228	7E-9		1.2431419	[0.82-1.66] unit increase	Illumina [13427809] (imputed)	N
613	chr6_cox_hap2	3744564	3744565	rs6457536	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs6457536-G	NR	5E-11		0.0222803	[0.016-0.029] unit decrease	Affymetrix [321169] (imputed)	N
613	chr6_cox_hap2	3747084	3747085	rs28366178	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	6p21.32	C6orf10	rs28366178-T	NR	9E-8		0.0353278	[0.022-0.048] unit increase	Illumina [13519193] (imputed)	N
613	chr6_cox_hap2	3749438	3749439	rs9268199	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	C6orf10	rs9268199-G	NR	2E-8		0.0203912	[0.013-0.028] unit decrease	Affymetrix [319769] (imputed)	N
613	chr6_cox_hap2	3749438	3749439	rs9268199	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs9268199-G	NR	3E-8		0.0201935	[0.013-0.027] unit decrease	Affymetrix [319769] (imputed)	N
613	chr6_cox_hap2	3749438	3749439	rs9268199	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs9268199-G	NR	2E-8		0.0207992	[0.014-0.028] unit decrease	Affymetrix [321169] (imputed)	N
613	chr6_cox_hap2	3749438	3749439	rs9268199	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.32	C6orf10	rs9268199-G	NR	2E-8	(women)	0.0327867	[0.021-0.044] unit increase	Illumina [13520550] (imputed)	N
613	chr6_cox_hap2	3749595	3749596	rs3864302	34116867	Tanaka N	2021-06-02	J Allergy Clin Immunol	Eight novel susceptibility loci and putative causal variants in atopic dermatitis.	Atopic dermatitis	2,597 Japanese ancestry cases, 110,504 Japanese ancestry controls	NA	6p21.32		rs3864302-?	NR	6E-17		0.77	[0.72-0.82]	Illumina [9900441] (imputed)	N
613	chr6_cox_hap2	3750143	3750144	rs9268202	29534301	Nishida N	2018-03-13	Hepatology	Key HLA-DRB1-DQB1 haplotypes and role of the BTNL2 gene for response to a hepatitis B vaccine.	Response to hepatitis B vaccine	107 Japanese ancestry low responder individuals, 351 Japanese ancestry intermediate responder individuals, 735 Japanese ancestry high responder individuals	NA	6p21.32	C6orf10	rs9268202-?		8E-8		0.168	unit decrease	Affymetrix [427664]	N
613	chr6_cox_hap2	3750425	3750426	rs6934429	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	C6orf10	rs6934429-T	NR	9E-14		0.0248579	[0.018-0.031] unit decrease	Affymetrix [319769] (imputed)	N
613	chr6_cox_hap2	3750425	3750426	rs6934429	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs6934429-T	NR	7E-13		0.0239747	[0.017-0.031] unit decrease	Affymetrix [319769] (imputed)	N
613	chr6_cox_hap2	3751818	3751819	rs74209703	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.32	NR	rs74209703-?	NR	5E-10				Affymetrix [~ 8270000] (imputed)	N
613	chr6_cox_hap2	3752214	3752215	rs28366179	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	6p21.32	C6orf10	rs28366179-A	0.1646	3E-21		0.04564547	[0.036-0.055] unit increase	Affymetrix [~ 2500000] (imputed)	N
613	chr6_cox_hap2	3752869	3752870	rs2395141	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs2395141-?	NR	3E-10				Affymetrix [~ 8270000] (imputed)	N
613	chr6_cox_hap2	3753655	3753656	rs6910071	20453842	Stahl EA	2010-05-09	Nat Genet	Genome-wide association study meta-analysis identifies seven new rheumatoid arthritis risk loci.	Rheumatoid arthritis	5,539 European ancestry cases, 20,169 European ancestry controls	6,768 European ancestry cases, 8,806 European ancestry controls	6p21.32	HLA-DRB1	rs6910071-G	0.22	1E-299		2.88	[2.73-3.03]	Affymetrix, Illumina [~ 2716259] (imputed)	N
613	chr6_cox_hap2	3757486	3757487	rs2022542	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	6p21.32	C6orf10	rs2022542-G	0.0582	2E-52		0.1169749	[0.1-0.13] unit increase	Affymetrix [~ 2500000] (imputed)	N
613	chr6_cox_hap2	3758129	3758130	rs2746115	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	6p21.32	NR	rs2746115-?	NR	8E-9				Affymetrix [~ 8270000] (imputed)	N
613	chr6_cox_hap2	3764382	3764383	rs2395143	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	C6orf10, HNRNPA1P2	rs2395143-G	NR	2E-10		0.0215226	[0.015-0.028] unit decrease	Affymetrix [323123] (imputed)	N
613	chr6_cox_hap2	3766233	3766236	rs759777208	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	C6orf10	rs759777208-CT	NR	3E-12		0.0275667	[0.02-0.035] unit decrease	Affymetrix [323858] (imputed)	N
613	chr6_cox_hap2	3766233	3766236	rs759777208	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	C6orf10	rs759777208-CT	NR	2E-11		0.0265095	[0.019-0.034] unit decrease	Affymetrix [127266] (imputed)	N
613	chr6_cox_hap2	3766233	3766236	rs759777208	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	C6orf10	rs759777208-CT	NR	4E-8		0.0212618	[0.014-0.029] unit increase	Affymetrix [323123] (imputed)	N
613	chr6_cox_hap2	3766233	3766236	rs759777208	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p21.32	C6orf10	rs759777208-CT	NR	2E-8		0.0218536	[0.014-0.03] unit decrease	Affymetrix [323858] (imputed)	N
613	chr6_cox_hap2	3766549	3766550	rs9268249	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	C6orf10	rs9268249-A	NR	5E-8		0.015398	[0.0099-0.0209] unit decrease	Affymetrix [321016] (imputed)	N
613	chr6_cox_hap2	3766549	3766550	rs9268249	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	C6orf10	rs9268249-A	NR	7E-15		0.0239145	[0.018-0.03] unit decrease	Affymetrix [323123] (imputed)	N
613	chr6_cox_hap2	3766679	3766680	rs6913664	34785669	Grosche S	2021-11-16	Nat Commun	Rare variant analysis in eczema identifies exonic variants in DUSP1, NOTCH4 and SLC9A4.	Eczema	20,016 European ancestry cases, 380,433 European ancestry controls	NA	6p21.32		rs6913664-T	0.4549	1E-15		0.91		Affymetrix, Illumina [9397031] (imputed)	N
613	chr6_cox_hap2	3766683	3766684	rs9268251	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	C6orf10	rs9268251-A	NR	7E-11		0.0216525	[0.015-0.028] unit decrease	Affymetrix [319769] (imputed)	N
613	chr6_cox_hap2	3766683	3766684	rs9268251	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs9268251-A	NR	3E-10		0.0208763	[0.014-0.027] unit decrease	Affymetrix [319769] (imputed)	N
613	chr6_cox_hap2	3766683	3766684	rs9268251	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs9268251-A	NR	5E-10		0.0208582	[0.014-0.027] unit decrease	Affymetrix [321169] (imputed)	N
613	chr6_cox_hap2	3770261	3770262	rs145396511	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs145396511-T	0.989	5E-9	(conditional)	1.574	[1.42-1.72]	Illumina [11270530] (imputed)	N
613	chr6_cox_hap2	3771611	3771612	rs3129960	33106546	Johnson TA	2020-10-26	J Hum Genet	Association of an IGHV3-66 gene variant with Kawasaki disease.	Kawasaki disease	1,276 East Asian ancestry cases, 5,086 East Asian ancestry controls	2,152 East Asian ancestry cases, 2,751 East Asian ancestry controls	6p21.32	C6orf10, LOC101929163	rs3129960-G	NR	7E-13		0.73	[0.67-0.80]	Affymetrix, Illumina [6265045] (imputed)	N
613	chr6_cox_hap2	3772229	3772230	rs115378818	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.32	C6orf10	rs115378818-T	0.0143760000000001	3E-49		0.16935384	[0.15-0.19] unit decrease	Affymetrix [93095623] (imputed)	N
613	chr6_cox_hap2	3773182	3773183	rs1265757	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p21.32	C6orf10	rs1265757-A	0.343	1E-33				Illumina [118177]	N
613	chr6_cox_hap2	3776038	3776039	rs78546106	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs78546106-?	NR	6E-11				Affymetrix [~ 8270000] (imputed)	N
613	chr6_cox_hap2	3776458	3776459	rs926592	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p21.32	TSBP1	rs926592-C	0.658	6E-6		0.059	[0.034-0.084] unit increase	Affymetrix, Illumina [7374092] (imputed)	N
613	chr6_cox_hap2	3776779	3776780	rs3129900	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (multivariate analysis)	477,968 European ancestry individuals	NA	6p21.32	C6orf10	rs3129900-G	0.171	7E-17		0.05	[0.038-0.062] unit decrease	NR [NR] (imputed)	N
613	chr6_cox_hap2	3776779	3776780	rs3129900	20639878	Singer JB	2010-07-18	Nat Genet	A genome-wide study identifies HLA alleles associated with lumiracoxib-related liver injury.	Lumiracoxib-related liver injury	31 European ancestry cases, 3 Hispanic cases, 1 case, 176 European, Hispanic and other ancestry controls	79 European ancestry cases, 16 Hispanic ancestry cases, 1 case, 405 European, Hispanic and other ancestry controls	6p21.32	HLA-DRB1	rs3129900-?	0.105	7E-25		7.5	[5.0-11.3]	Affymetrix [682386]	N
613	chr6_cox_hap2	3776890	3776891	rs9368716	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	C6orf10	rs9368716-A	NR	4E-17		0.0234977	[0.018-0.029] unit increase	Affymetrix [319769] (imputed)	N
613	chr6_cox_hap2	3776890	3776891	rs9368716	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs9368716-A	NR	1E-16		0.0231755	[0.018-0.029] unit increase	Affymetrix [319769] (imputed)	N
613	chr6_cox_hap2	3776890	3776891	rs9368716	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs9368716-A	NR	4E-9		0.0166452	[0.011-0.022] unit increase	Affymetrix [321114] (imputed)	N
613	chr6_cox_hap2	3776890	3776891	rs9368716	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs9368716-A	NR	4E-17		0.023828	[0.018-0.029] unit increase	Affymetrix [321169] (imputed)	N
613	chr6_cox_hap2	3779709	3779710	rs9469099	23042114	Hirota T	2012-10-07	Nat Genet	Genome-wide association study identifies eight new susceptibility loci for atopic dermatitis in the Japanese population.	Atopic dermatitis	1,472 Japanese ancestry cases, 7,971 Japanese ancestry controls	1,856 Japanese ancestry cases, 7,021 Japanese ancestry controls	6p21.32	C6orf10	rs9469099-G	0.909	5E-19		1.61	[1.44-1.80]	Illumina [606164]	N
613	chr6_cox_hap2	3781664	3781665	rs2849018	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Diastolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	6p21.32	C6orf10	rs2849018-C	0.6531	2E-17		0.3443	[0.26-0.42] mmHg increase	Affymetrix [NR] (imputed)	N
613	chr6_cox_hap2	3782260	3782261	rs3132954	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.32	NR	rs3132954-?	NR	3E-11				Affymetrix [~ 8270000] (imputed)	N
613	chr6_cox_hap2	3784456	3784457	rs1265764	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	C6orf10	rs1265764-A	NR	2E-8		0.0409576	[0.027-0.055] unit decrease	Affymetrix [323858] (imputed)	N
613	chr6_cox_hap2	3784456	3784457	rs1265764	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	C6orf10	rs1265764-A	NR	1E-8		0.0407492	[0.027-0.055] unit increase	Affymetrix [323123] (imputed)	N
613	chr6_cox_hap2	3784456	3784457	rs1265764	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.32	C6orf10, XXbac-BPG154L12.5	rs1265764-A	0.0414	7E-7		0.1177	[0.071-0.164] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
613	chr6_cox_hap2	3785709	3785710	rs78461719	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	6p21.32	NR	rs78461719-T	0.03388599999999997	1E-8		0.0314455	[0.022-0.041] unit increase	Affymetrix [16578495] (imputed)	N
613	chr6_cox_hap2	3786183	3786184	rs910049	23321320	Urabe Y	2013-01-12	J Hepatol	A genome-wide association study of HCV-induced liver cirrhosis in the Japanese population identifies novel susceptibility loci at the MHC region.	Hepatitis C induced liver cirrhosis	682 Japanese ancestry cases, 1,045 Japanese ancestry controls	936 Japanese ancestry cases, 3,809 Japanese ancestry controls	6p21.32	C6orf10	rs910049-A	0.142	9E-11		1.46	[1.28-1.62]	Illumina [431618]	N
613	chr6_cox_hap2	3790087	3790088	rs9268301	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6p21.32	C6orf10	rs9268301-A	0.438	2E-6	(Diet carbohydrate )	0.03	[NR] g/d increase	Illumina [899892]	N
613	chr6_cox_hap2	3791919	3791920	rs368529276	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs368529276-A	0.961	4E-19		2.522	[2.32-2.72]	Illumina [11270530] (imputed)	N
613	chr6_cox_hap2	3792000	3792001	rs2395148	18576341	Behrens EM	2008-06-24	Arthritis Rheum	Association of the TRAF1-C5 locus on chromosome 9 with juvenile idiopathic arthritis.	Arthritis (juvenile idiopathic)	67 European ancestry cases, 1,952 European ancestry controls, 63 cases	NA	6p21.32	HLA-DRB1	rs2395148-?	NR	2E-10		5.37	[3.02-9.56]	Illumina [524684]	N
613	chr6_cox_hap2	3795817	3795818	rs13196329	29196614	Sud A	2017-12-01	Nat Commun	Genome-wide association study of classical Hodgkin lymphoma identifies key regulators of disease susceptibility.	Mixed cellularity Hodgkin lymphoma	828 European ancestry cases, 14,315 European ancestry controls	135 cases, 3,069 controls	6p21.32	C6orf10	rs13196329-?	NR	3E-14	(conditioned on rs1633096)	5.88	[3.70-9.09]	Illumina [> 10000000] (imputed)	N
613	chr6_cox_hap2	3795817	3795818	rs13196329	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral fat	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	6p21.32	C6orf10	rs13196329-C	0.02	3E-6	(women)			Affymetrix, Illumina [2500000] (imputed)	N
613	chr6_cox_hap2	3797103	3797104	rs7775581	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.32		rs7775581-C	0.429	4E-12				Affymetrix [10369434] (imputed)	N
613	chr6_cox_hap2	3797368	3797369	rs9268310	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	Systemic lupus erythematosus	1,639 East Asian ancestry cases, 2,410 East Asian ancestry controls	NA			rs9268310-C	NR	7E-14		0.3626	[0.27-0.46] unit decrease	Illumina [NR] (imputed)	N
613	chr6_cox_hap2	3799596	3799597	rs137931178	26959717	Nicoletti P	2016-03-09	Pharmacogenet Genomics	HLA-DRB1*16: 01-DQB1*05: 02 is a novel genetic risk factor for flupirtine-induced liver injury.	Drug-induced liver injury	620 European ancestry cases, 10,588 European ancestry controls	NA	6p21.32	MHC	rs137931178-?	NR	7E-6		79.0	[11.72-533.7]	Illumina [NR] (imputed)	N
614	chr6_cox_hap2	3805680	3805681	rs2143462	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	C6orf10	rs2143462-A	NR	7E-12		0.0268233	[0.019-0.034] unit decrease	Affymetrix [323858] (imputed)	N
614	chr6_cox_hap2	3805680	3805681	rs2143462	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	C6orf10	rs2143462-A	NR	6E-11		0.0256594	[0.018-0.033] unit decrease	Affymetrix [127266] (imputed)	N
614	chr6_cox_hap2	3806666	3806667	rs3129934	22457343	Martinelli-Boneschi F	2012-03-28	Mult Scler	A genome-wide association study in progressive multiple sclerosis.	Multiple sclerosis	197 European ancestry cases, 234 European ancestry controls	379 European ancestry cases, 398 European ancestry controls	6p21.32	C6orf10	rs3129934-T	0.10	7E-16		2.34	[1.90-2.87]	Affymetrix [277866]	N
614	chr6_cox_hap2	3806666	3806667	rs3129934	18941528	Comabella M	2008-10-22	PLoS One	Identification of a novel risk locus for multiple sclerosis at 13q31.3 by a pooled genome-wide scan of 500,000 single nucleotide polymorphisms.	Multiple sclerosis	242 European ancestry cases, 242 European ancestry controls	553 European ancestry cases, 1,033 European ancestry controls	6p21.32	HLA-DRB1	rs3129934-T	NR	9E-11		3.3	[2.3-4.9]	Affymetrix [428867]	N
614	chr6_cox_hap2	3807024	3807025	rs113857285	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Celiac disease (PheCode 557.1)	1,036 European ancestry cases, 455,312 European ancestry controls	NA	6p21.32		rs113857285-A	0.002145	8E-10		4.04	[2.75-5.33] unit increase	NR [11842647] (imputed)	N
614	chr6_cox_hap2	3807245	3807246	rs3129939	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.32	c6orf10	rs3129939-G	0.1772	2E-40		2.6	[NR]	Illumina [242824]	N
614	chr6_cox_hap2	3808110	3808111	rs2273017	21900946	Nakabayashi K	2011-09-08	J Hum Genet	Identification of independent risk loci for Graves' disease within the MHC in the Japanese population.	Graves' disease	1,119 Japanese ancestry cases, 2,718 Japanese ancestry controls	432 Japanese ancestry cases, 1,157 Japanese ancestry controls	6p21.32	MHC	rs2273017-A	0.51	2E-22		1.53	[1.40-1.66]	Perlegen [268068]	N
614	chr6_cox_hap2	3808736	3808737	rs3129942	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	6p21.32	C6orf10	rs3129942-G	0.742436	3E-18		0.013944	[0.011-0.017] unit decrease	Affymetrix [12370749]	N
614	chr6_cox_hap2	3809155	3809156	rs3129943	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cirrhosis	2,551 East Asian ancestry cases, 176,175 East Asian ancestry controls	NA	6p21.32		rs3129943-G	0.365494247	2E-11		0.19759746	[0.14-0.26] unit increase	Illumina [13429980] (imputed)	N
614	chr6_cox_hap2	3809155	3809156	rs3129943	21804548	Hirota T	2011-07-31	Nat Genet	Genome-wide association study identifies three new susceptibility loci for adult asthma in the Japanese population.	Asthma	1,532 Japanese ancestry cases, 3,304 Japanese ancestry controls	5,639 Japanese ancestry cases, 24,608 Japanese ancestry controls	6p21.32	C6orf10	rs3129943-T	0.62	3E-15		1.17	[1.12-1.21]	Illumina [458847]	N
614	chr6_cox_hap2	3809445	3809446	rs2073044	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	C6orf10	rs2073044-T	NR	3E-16		0.0261214	[0.02-0.032] unit increase	Affymetrix [319769] (imputed)	N
614	chr6_cox_hap2	3809445	3809446	rs2073044	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs2073044-T	NR	5E-16		0.0258492	[0.02-0.032] unit increase	Affymetrix [319769] (imputed)	N
614	chr6_cox_hap2	3809445	3809446	rs2073044	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs2073044-T	NR	8E-14		0.0241214	[0.018-0.03] unit increase	Affymetrix [321169] (imputed)	N
614	chr6_cox_hap2	3809535	3809536	rs2050190	34116867	Tanaka N	2021-06-02	J Allergy Clin Immunol	Eight novel susceptibility loci and putative causal variants in atopic dermatitis.	Atopic dermatitis	2,597 Japanese ancestry cases, 110,504 Japanese ancestry controls, 25,685 European ancestry cases, 76,768 European ancestry controls	NA	6p21.32		rs2050190-?	NR	4E-13		0.8	[0.75-0.85]	Illumina [5170515] (imputed)	N
614	chr6_cox_hap2	3809535	3809536	rs2050190	22703881	Tang W	2012-06-14	Am J Hum Genet	Genetic associations for activated partial thromboplastin time and prothrombin time, their gene expression profiles, and risk of coronary artery disease.	Activated partial thromboplastin time	9,240 European ancestry individuals	2611 European ancestry individuals	6p21.32	C6orf10	rs2050190-A	NR	7E-7		0.2528	[0.17-0.34] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
614	chr6_cox_hap2	3810243	3810244	rs9501618	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs9501618-C	0.016	9E-26	(Complement C4, C4A.C4B.4481.34.2)	1.03	[0.83-1.23] unit increase	Affymetrix [10572788] (imputed)	N
614	chr6_cox_hap2	3810299	3810300	rs6913309	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Strep throat	52,487 European ancestry cases, 22,017 European ancestry controls	NA	6p21.32	NR	rs6913309-?	NR	5E-7		0.0308	[0.019-0.043] unit decrease	Illumina [at least 560000] (imputed)	N
614	chr6_cox_hap2	3810299	3810300	rs6913309	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.32	Intergenic	rs6913309-T	NR	4E-6	(men)	0.0229829	[0.013-0.033] unit increase	Illumina [13520550] (imputed)	N
614	chr6_cox_hap2	3810356	3810357	rs2050188	31375628	Tengvall K	2019-08-02	Proc Natl Acad Sci U S A	Molecular mimicry between Anoctamin 2 and Epstein-Barr virus nuclear antigen 1 associates with multiple sclerosis risk.	Anti-anoctamin 2 antibody levels	11,936 European ancestry individuals	NA	6p21.32	NR	rs2050188-G	NR	2E-14		0.07	[0.046-0.094] unit increase	Illumina [615763]	N
614	chr6_cox_hap2	3810356	3810357	rs2050188	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	6p21.32	HLA-DRB5, C6orf10	rs2050188-T	0.673	9E-6	(EA)	0.0509	[0.028-0.073] unit increase	Affymetrix, Illumina [NR] (imputed)	N
614	chr6_cox_hap2	3810356	3810357	rs2050188	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	6p21.32	HLA-DRB5, C6orf10	rs2050188-T	0.67	8E-9		1.06	[1.04-1.08]	Affymetrix, Illumina [NR] (imputed)	N
614	chr6_cox_hap2	3810384	3810385	rs6913471	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	C6orf10	rs6913471-A	NR	1E-8		0.0182835	[0.012-0.025] unit decrease	Affymetrix [323123] (imputed)	N
614	chr6_cox_hap2	3810565	3810566	rs2281276	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	C6orf10	rs2281276-G	NR	2E-11		0.0210706	[0.015-0.027] unit increase	Affymetrix [323858] (imputed)	N
614	chr6_cox_hap2	3810565	3810566	rs2281276	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	C6orf10	rs2281276-G	NR	2E-10		0.0199503	[0.014-0.026] unit increase	Affymetrix [127266] (imputed)	N
614	chr6_cox_hap2	3810565	3810566	rs2281276	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	C6orf10	rs2281276-G	NR	4E-15		0.0241531	[0.018-0.03] unit decrease	Affymetrix [323123] (imputed)	N
614	chr6_cox_hap2	3810565	3810566	rs2281276	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	6p21.32	C6orf10	rs2281276-G	0.472805	6E-12		0.01778208	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
614	chr6_cox_hap2	3811331	3811332	rs3129944	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs3129944-G	NR	4E-10		0.0217534	[0.015-0.029] unit decrease	Affymetrix [321169] (imputed)	N
614	chr6_cox_hap2	3811667	3811668	rs9378202	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	C6orf10	rs9378202-C	NR	3E-9		0.0239944	[0.016-0.032] unit decrease	Affymetrix [323123] (imputed)	N
614	chr6_cox_hap2	3811812	3811813	rs9268402	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	C6orf10	rs9268402-G	NR	2E-17		0.0239092	[0.018-0.029] unit decrease	Affymetrix [319769] (imputed)	N
614	chr6_cox_hap2	3811812	3811813	rs9268402	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs9268402-G	NR	4E-17		0.0236172	[0.018-0.029] unit decrease	Affymetrix [319769] (imputed)	N
614	chr6_cox_hap2	3811812	3811813	rs9268402	22751097	Lu X	2012-07-01	Nat Genet	Genome-wide association study in Han Chinese identifies four new susceptibility loci for coronary artery disease.	Coronary heart disease	1,515 Han Chinese ancestry cases, 5,019 Han Chinese ancestry controls	15,460 Han Chinese ancestry cases, 11,472 Han Chinese ancestry controls	6p21.32	BTNL2, C6orf10	rs9268402-G	0.59	3E-15		1.16	[1.12-1.20]	Affymetrix [~ 2200000] (imputed)	N
614	chr6_cox_hap2	3811857	3811858	rs9391858	31566214	Kulminski AM	2019-09-30	J Gerontol A Biol Sci Med Sci	Quantitative and qualitative role of antagonistic heterogeneity in genetics of blood lipids.	Total cholesterol levels	29,902 European ancestry individuals	NA			rs9391858-G	0.14	3E-8		2.4	[1.56-3.24] unit increase	Affymetrix, Illumina [up to 2500000] (imputed)	N
614	chr6_cox_hap2	3812562	3812563	rs73729220	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.32	NR	rs73729220-G	0.015	6E-7	(women)	0.670827	[0.41-0.93] unit increase	Affymetrix [up to 8900000] (imputed)	N
614	chr6_cox_hap2	3812562	3812563	rs73729220	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.32	NR	rs73729220-G	0.015	4E-9		0.429629	[0.29-0.57] unit increase	Affymetrix [up to 8900000] (imputed)	N
614	chr6_cox_hap2	3812980	3812981	rs3129945	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p21.32	NR	rs3129945-?	NR	3E-6		4.704	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
614	chr6_cox_hap2	3813812	3813813	rs3117106	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	C6orf10	rs3117106-C	NR	4E-11		0.0274536	[0.019-0.036] unit increase	Affymetrix [323123] (imputed)	N
614	chr6_cox_hap2	3815529	3815530	rs12528797	28107422	de Vries PS	2017-01-20	PLoS One	Comparison of HapMap and 1000 Genomes Reference Panels in a Large-Scale Genome-Wide Association Study.	Fibrinogen levels	91,953 European ancestry individuals (imputed to HapMap)		6p21.32	C6orf10, HCG23	rs12528797-?	NR	9E-9		0.0095	unit increase	Affymetrix, Illumina [2749429] (imputed)	N
614	chr6_cox_hap2	3815726	3815727	rs7758128	21326295	Jin Y	2011-02-17	J Invest Dermatol	Genome-wide analysis identifies a quantitative trait locus in the MHC class II region associated with generalized vitiligo age of onset.	Vitiligo	1,339 European ancestry cases	677 European ancestry cases	6p21.32	BTNL2, C6orf10	rs7758128-A	0.06	8E-11				Illumina [520460]	N
614	chr6_cox_hap2	3816038	3816039	rs2395153	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs2395153-G	NR	9E-12		0.0195615	[0.014-0.025] unit increase	Affymetrix [321114] (imputed)	N
614	chr6_cox_hap2	3816038	3816039	rs2395153	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs2395153-G	NR	3E-19		0.0258131	[0.02-0.031] unit increase	Affymetrix [321169] (imputed)	N
614	chr6_cox_hap2	3816132	3816133	rs2894254	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	6p21.32	C6orf10, BTNL2	rs2894254-T	NR	1E-13		0.238275	[0.18-0.3] unit increase	Illumina [at least 950000] (imputed)	N
614	chr6_cox_hap2	3816132	3816133	rs2894254	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.32	NOTCH4, C6orf10	rs2894254-T	0.8879	1E-7	(EA)	0.0337	[0.021-0.046] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
614	chr6_cox_hap2	3816132	3816133	rs2894254	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.32	BTNL2	rs2894254-T	0.8879	3E-9	(EA, men)	0.0557	[0.037-0.074] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
614	chr6_cox_hap2	3816132	3816133	rs2894254	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6p21.32	BTNL2	rs2894254-T	0.888	6E-8	(men)	0.058	[0.037-0.079] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
614	chr6_cox_hap2	3816132	3816133	rs2894254	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6p21.32	BTNL2	rs2894254-T	0.888	6E-8	(EA, men)	0.058	[0.037-0.079] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
614	chr6_cox_hap2	3816132	3816133	rs2894254	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6p21.32	BTNL2	rs2894254-T	0.8879	6E-7	(EA)	0.0363	[0.022-0.051] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
614	chr6_cox_hap2	3816132	3816133	rs2894254	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.32	NOTCH4, C6orf10	rs2894254-?	0.8879	5E-7	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
614	chr6_cox_hap2	3816132	3816133	rs2894254	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.32	BTNL2	rs2894254-?	0.8879	9E-9	(men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
614	chr6_cox_hap2	3816132	3816133	rs2894254	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.32	BTNL2	rs2894254-?	0.8879	9E-9	(EA, men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
614	chr6_cox_hap2	3816927	3816928	rs9268435	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Serum alkaline phosphatase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	6p21.32	LOC101929163	rs9268435-?		1E-10		0.0358	[0.025-0.047] unit decrease	Illumina [31500000] (imputed)	N
614	chr6_cox_hap2	3819991	3819992	rs3117103	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	6p21.32		rs3117103-A	0.859948	4E-9		0.0339726	[0.023-0.045] unit decrease	NR [11722792] (imputed)	N
614	chr6_cox_hap2	3820888	3820889	rs28732201	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p21.32	NR	rs28732201-?	NR	6E-16		0.1787	[0.14-0.22] unit decrease	Illumina [at least 560000] (imputed)	N
614	chr6_cox_hap2	3822000	3822001	rs6930777	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6p21.32		rs6930777-?	NR	5E-17		1.14262	[1.11-1.17]	NR [685523]	N
614	chr6_cox_hap2	3823050	3823051	rs9268465	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HCG23	rs9268465-T	NR	6E-10		0.0196001	[0.013-0.026] unit decrease	Affymetrix [319769] (imputed)	N
614	chr6_cox_hap2	3823050	3823051	rs9268465	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HCG23	rs9268465-T	NR	2E-8		0.0196784	[0.013-0.027] unit decrease	Affymetrix [323858] (imputed)	N
614	chr6_cox_hap2	3823050	3823051	rs9268465	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HCG23	rs9268465-T	NR	1E-9		0.0191769	[0.013-0.025] unit decrease	Affymetrix [319769] (imputed)	N
614	chr6_cox_hap2	3824856	3824857	rs4424066	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	6p21.32	NR	rs4424066-A	0.578029598622173	7E-14		0.024764335	units decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
614	chr6_cox_hap2	3827667	3827668	rs146003878	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs146003878-A	0.016	5E-11	(conditional)	1.678	[1.52-1.83]	Illumina [11270530] (imputed)	N
614	chr6_cox_hap2	3828629	3828630	rs3129950	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.32	BTNL2	rs3129950-G	0.8899	4E-9	(men)	0.0593	[0.04-0.079] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
614	chr6_cox_hap2	3828698	3828699	rs3117099	22688191	Bergen SE	2012-06-12	Mol Psychiatry	Genome-wide association study in a Swedish population yields support for greater CNV and MHC involvement in schizophrenia compared with bipolar disorder.	Bipolar disorder and schizophrenia	2,111 European ancestry schizophrenia cases, 836 European ancestry bipolar disorder cases, 2,535 European ancestry controls	NA	6p21.32	other genes, MHC	rs3117099-?	NR	3E-6		1.25	[NR]	Affymetrix [745006]	N
614	chr6_cox_hap2	3828941	3828942	rs3117098	21804548	Hirota T	2011-07-31	Nat Genet	Genome-wide association study identifies three new susceptibility loci for adult asthma in the Japanese population.	Asthma	1,532 Japanese ancestry cases, 3,304 Japanese ancestry controls	5,639 Japanese ancestry cases, 24,608 Japanese ancestry controls	6p21.32	BTNL2	rs3117098-G	0.25	5E-12		1.16	[1.11-1.21]	Illumina [458847]	N
614	chr6_cox_hap2	3828977	3828978	rs9348883	29903748	Debiec H	2018-06-14	J Am Soc Nephrol	Transethnic, Genome-Wide Analysis Reveals Immune-Related Risk Alleles and Phenotypic Correlates in Pediatric Steroid-Sensitive Nephrotic Syndrome.	Childhood steroid-sensitive nephrotic syndrome	244 European ancestry cases, 2,552 European ancestry controls, 56 African cases, 454 African controls, 85 Maghrebian cases, 261 Maghrebian controls	NA	6p21.32	LOC101929163, HCG23, BTNL2	rs9348883-T	0.94	9E-7	(conditioned on rs1063348 & rs28366266)	3.5	[2.13-5.83]	Illumina [at least 7529344] (imputed)	N
614	chr6_cox_hap2	3829117	3829118	rs3117097	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling nervous	373,121 European ancestry individuals	NA	6p21.32	PSORS1C1	rs3117097-A	0.164022	4E-10		6.26	z score increase	NR [10847151] (imputed)	N
614	chr6_cox_hap2	3829888	3829889	rs16870123	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	6p21.32	NR	rs16870123-?	NR	1E-10		6.408	NR z score decrease	Illumina [at least 830937] (imputed)	N
614	chr6_cox_hap2	3831553	3831554	rs3817971	34871226	Kim SY	2021-11-01	Medicine (Baltimore)	Genome-wide association study identifies BTNL2 associated with atopic asthma in children.	Atopic asthma	243 East Asian ancestry child cases, 134 East Asian ancestry child controls	NA	6p21.32		rs3817971-A	NR	6E-7		3.509	[2.09-5.889]	Affymetrix [423461]	N
614	chr6_cox_hap2	3831553	3831554	rs3817971	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p21.32	C6orf10, BTNL2	rs3817971-C	0.03	5E-6	(Turkish)	2.62	[1.71-4.01]	Illumina [up to 547389]	N
614	chr6_cox_hap2	3831905	3831906	rs17202393	33592630	Herrera-Rivero M	2021-02-16	Thromb Haemost	Single- and Multimarker Genome-Wide Scans Evidence Novel Genetic Risk Modifiers for Venous Thromboembolism.	Venous thromboembolism	964 European ancestry cases, 899 European ancestry controls	NA	6p21.32	BTNL2, HCG23	rs17202393-A	NR	4E-38		0.03743	[0.02273-0.06163]	Illumina [484621]	N
614	chr6_cox_hap2	3832431	3832432	rs114516436	27629369	Gao J	2016-09-15	Neuropsychopharmacology	Genome-Wide Association Study of Loneliness Demonstrates a Role for Common Variation.	Loneliness (multivariate analysis)	8,490 European ancestry individuals, 1,228 African American individuals, 867 Hispanic American individuals, 175 individuals	NA	6p21.32	BTNL2, HCG23, C6orf10	rs114516436-?	NR	2E-6	(EA)			Illumina [7205781] (imputed)	N
614	chr6_cox_hap2	3833635	3833636	rs1980493	25936594	Tomer Y	2015-04-27	J Autoimmun	Genome wide identification of new genes and pathways in patients with both autoimmune thyroiditis and type 1 diabetes.	Type 1 diabetes and autoimmune thyroid diseases	346 European ancestry cases, 727 European ancestry controls	185 European ancestry cases, 340 European ancestry controls	6p21.32	BTNL2	rs1980493-G	NR	2E-20		2.5034		Illumina [514008]	N
614	chr6_cox_hap2	3833635	3833636	rs1980493	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.32	BTNL2	rs1980493-G	0.1656	1E-48		2.87	[NR]	Illumina [242824]	N
614	chr6_cox_hap2	3833635	3833636	rs1980493	19287509	Cui J	2009-03-14	Mol Med	Genome-wide association study of determinants of anti-cyclic citrullinated peptide antibody titer in adults with rheumatoid arthritis.	Anti-cyclic Citrullinated Peptide Antibody	531 European ancestry cases	849 European ancestry cases	6p21.32	HLA-DRA, BTNL2	rs1980493-?	0.13	5E-7				Affymetrix [97248]	N
614	chr6_cox_hap2	3834236	3834237	rs2076530	22936702	Hofmann S	2012-08-30	Eur Respir J	Genome-wide association analysis reveals 12q13.3-q14.1 as new risk locus for sarcoidosis.	Sarcoidosis	637 European ancestry cases, 1,233 European ancestry controls	3,121 European ancestry cases, 4,284 European ancestry controls	6p21.32	BTNL2	rs2076530-?	NR	3E-11	(Chronic)			Affymetrix [677619]	N
614	chr6_cox_hap2	3834264	3834265	rs9268480	19915573	Asano K	2009-11-15	Nat Genet	A genome-wide association study identifies three new susceptibility loci for ulcerative colitis in the Japanese population.	Ulcerative colitis	376 Japanese ancestry cases, 934 Japanese ancestry controls	376 Japanese ancestry cases, 1,097 Japanese ancestry controls	6p21.32	BTNL2	rs9268480-G	0.91	3E-6		1.82	[1.43-2.33]	Illumina [513923]	N
614	chr6_cox_hap2	3834375	3834376	rs2076529	32766473	Yoshida K	2020-05-19	Hepatol Commun	Genome-Wide Association Study of Lean Nonalcoholic Fatty Liver Disease Suggests Human Leukocyte Antigen as a Novel Candidate Locus.	Lean nonalcoholic fatty liver disease	275 Japanese ancestry cases, 1,411 Japanese ancestry controls	NA	6p21.32	NR	rs2076529-?	NR	2E-7		1.66	[1.37-2.00]	Affymetrix [NR]	N
614	chr6_cox_hap2	3834375	3834376	rs2076529	20935629	Heid IM	2010-10-10	Nat Genet	Meta-analysis identifies 13 new loci associated with waist-hip ratio and reveals sexual dimorphism in the genetic basis of fat distribution.	Waist-hip ratio	Up to 77,167 European ancestry individuals	Up to 113,636 European ancestry individuals	6p21.32	BTNL2	rs2076529-C	0.43	4E-7		0.02	[NR] unit increase	Affymetrix, Illumina, Perlegen [up to 2850269] (imputed)	N
614	chr6_cox_hap2	3836841	3836842	rs4248166	29534301	Nishida N	2018-03-13	Hepatology	Key HLA-DRB1-DQB1 haplotypes and role of the BTNL2 gene for response to a hepatitis B vaccine.	Response to hepatitis B vaccine	107 Japanese ancestry low responder individuals, 351 Japanese ancestry intermediate responder individuals, 735 Japanese ancestry high responder individuals	NA	6p21.32	BTNL2	rs4248166-?		1E-12		0.124	unit decrease	Affymetrix [427664]	N
614	chr6_cox_hap2	3836841	3836842	rs4248166	26819262	Zhou Y	2016-01-27	Mult Scler	Genetic loci for Epstein-Barr virus nuclear antigen-1 are associated with risk of multiple sclerosis.	Epstein Barr virus nuclear antigen 1 IgG levels	1,243 parents and up to 2,356 children from 992 families, 1,956 Mexican American individuals		6p21.32	NR	rs4248166-T		9E-11	(Mexican American)	0.16	unit decrease	Illumina [up to 2428201] (imputed)	N
614	chr6_cox_hap2	3836841	3836842	rs4248166	26819262	Zhou Y	2016-01-27	Mult Scler	Genetic loci for Epstein-Barr virus nuclear antigen-1 are associated with risk of multiple sclerosis.	Epstein Barr virus nuclear antigen 1 IgG levels	1,243 parents and up to 2,356 children from 992 families, 1,956 Mexican American individuals		6p21.32	NR	rs4248166-T		1E-9		0.16	unit decrease	Illumina [up to 2428201] (imputed)	N
614	chr6_cox_hap2	3837437	3837438	rs3117116	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein BGLAP	5,367 Icelandic ancestry individuals	NA	6p21.32		rs3117116-G	0.2246	5E-20		0.208543	[0.16-0.25] unit decrease	Illumina [7506463] (imputed)	N
614	chr6_cox_hap2	3838507	3838508	rs3817963	27501781	Shiraishi K	2016-08-09	Nat Commun	Association of variations in HLA class II and other loci with susceptibility to EGFR-mutated lung adenocarcinoma.	EGFR mutation-positive lung adenocarcinoma	663 Japanese ancestry cases, 4,367 Japanese ancestry controls	2,510 Japanese ancestry cases, 10,791 Japanese ancestry controls	6p21.32	BTNL2	rs3817963-G	0.316	1E-16		1.29	[1.21-1.37]	Illumina [NR] (imputed)	N
614	chr6_cox_hap2	3838507	3838508	rs3817963	23472185	Mero IL	2013-03-05	PLoS One	Oligoclonal band status in Scandinavian multiple sclerosis patients is associated with specific genetic risk alleles.	Multiple sclerosis (OCB status)	1,367 European ancestry OCB positive cases, 161 European ancestry OCB negative cases, 428 European ancestry controls	NA	6p21.32	BTNL2	rs3817963-?	NR	8E-6	(OCB positive vs. controls)	1.52	[1.27-1.79]	Illumina [495970]	N
614	chr6_cox_hap2	3838507	3838508	rs3817963	23472185	Mero IL	2013-03-05	PLoS One	Oligoclonal band status in Scandinavian multiple sclerosis patients is associated with specific genetic risk alleles.	Multiple sclerosis (OCB status)	1,367 European ancestry OCB positive cases, 161 European ancestry OCB negative cases	3,029 European ancestry OCB positive cases, 374 European ancestry OCB negative cases	6p21.32	BTNL2	rs3817963-?	NR	6E-10		1.61	[1.38-1.87]	Illumina [495970]	N
614	chr6_cox_hap2	3838507	3838508	rs3817963	23321320	Urabe Y	2013-01-12	J Hepatol	A genome-wide association study of HCV-induced liver cirrhosis in the Japanese population identifies novel susceptibility loci at the MHC region.	Hepatitis C induced liver cirrhosis	682 Japanese ancestry cases, 1,045 Japanese ancestry controls	936 Japanese ancestry cases, 3,809 Japanese ancestry controls	6p21.32	BTNL2	rs3817963-A	0.315	1E-8		1.3	[1.18-1.42]	Illumina [431618]	N
614	chr6_cox_hap2	3838507	3838508	rs3817963	22797724	Shiraishi K	2012-07-15	Nat Genet	A genome-wide association study identifies two new susceptibility loci for lung adenocarcinoma in the Japanese population.	Lung adenocarcinoma	1,695 Japanese ancestry cases, 5,333 Japanese ancestry controls	4,334 Japanese ancestry cases, 8,202 Japanese ancestry controls	6p21.32	BTNL2	rs3817963-G	0.318	3E-10		1.18	[1.12-1.24]	Illumina [538166]	N
614	chr6_cox_hap2	3838978	3838979	rs9268485	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	BTNL2	rs9268485-C	NR	1E-22		0.0275591	[0.022-0.033] unit decrease	Affymetrix [319769] (imputed)	N
614	chr6_cox_hap2	3838978	3838979	rs9268485	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	BTNL2	rs9268485-C	NR	2E-12		0.0220667	[0.016-0.028] unit decrease	Affymetrix [323858] (imputed)	N
614	chr6_cox_hap2	3838978	3838979	rs9268485	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	BTNL2	rs9268485-C	NR	4E-22		0.0271651	[0.022-0.033] unit decrease	Affymetrix [319769] (imputed)	N
614	chr6_cox_hap2	3838978	3838979	rs9268485	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	BTNL2	rs9268485-C	NR	3E-11		0.0208559	[0.015-0.027] unit decrease	Affymetrix [127266] (imputed)	N
614	chr6_cox_hap2	3838978	3838979	rs9268485	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	BTNL2	rs9268485-C	NR	3E-13		0.0204722	[0.015-0.026] unit increase	Affymetrix [321016] (imputed)	N
614	chr6_cox_hap2	3838978	3838979	rs9268485	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	BTNL2	rs9268485-C	NR	2E-12		0.0216048	[0.016-0.028] unit increase	Affymetrix [323123] (imputed)	N
614	chr6_cox_hap2	3838980	3838981	rs9268486	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs9268486-T	0.248	8E-27	(conditional)	1.384	[1.33-1.44]	Illumina [11270530] (imputed)	N
614	chr6_cox_hap2	3839893	3839894	rs3763305	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	6p21.32		rs3763305-G	0.949	4E-9				Affymetrix [10369434] (imputed)	N
614	chr6_cox_hap2	3839893	3839894	rs3763305	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.32	BTNL2	rs3763305-A	0.051434	4E-15		0.041934814	[0.031-0.052] unit decrease	Affymetrix [93095623] (imputed)	N
614	chr6_cox_hap2	3840992	3840993	rs9461741	25569183	Vijai J	2015-01-08	Nat Commun	A genome-wide association study of marginal zone lymphoma shows association to the HLA region.	Marginal zone lymphoma	825 European ancestry cases, 6,221 European ancestry controls	456 European ancestry cases, 906 European ancestry controls	6p21.32	BTNL2	rs9461741-C	0.018	4E-15		2.66	[2.08-3.39]	Illumina [611856]	N
614	chr6_cox_hap2	3841021	3841022	rs2076525	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	BTNL2	rs2076525-C	NR	9E-15		0.0237827	[0.018-0.03] unit increase	Affymetrix [321169] (imputed)	N
614	chr6_cox_hap2	3841240	3841241	rs2076523	29903748	Debiec H	2018-06-14	J Am Soc Nephrol	Transethnic, Genome-Wide Analysis Reveals Immune-Related Risk Alleles and Phenotypic Correlates in Pediatric Steroid-Sensitive Nephrotic Syndrome.	Childhood steroid-sensitive nephrotic syndrome	56 African cases, 454 African controls	NA	6p21.32	BTNL2	rs2076523-?	NR	2E-9		4.8	[2.9-7.9]	Illumina [at least 7529344] (imputed)	N
614	chr6_cox_hap2	3843590	3843591	rs10947260	28369058	Folkersen L	2017-04-03	PLoS Genet	Mapping of 79 loci for 83 plasma protein biomarkers in cardiovascular disease.	Blood protein levels in cardiovascular risk	3,394 European ancestry individuals	2,639 individuals	6p21.32	NOTCH4, AGER, ATF6B	rs10947260-C	0.1	6E-9		0.25	unit increase	Illumina [5270624] (imputed)	N
614	chr6_cox_hap2	3843637	3843638	rs10947261	23850713	Yang SK	2013-07-14	Gut	Genome-wide association study of Crohn's disease in Koreans revealed three new susceptibility loci and common attributes of genetic susceptibility across ethnic populations.	Crohn's disease	532 Korean ancestry cases, 733 Korean ancestry controls	1,779 Korean ancestry cases, 1,709 Korean ancestry controls	6p21.32	HLA-DRA, HLA-DRB5, BTNL2, HLA-DRB1, HLA-DQA1	rs10947261-T	0.294	3E-12		1.36	[1.25-1.49]	Illumina [5664371] (imputed)	N
614	chr6_cox_hap2	3843717	3843718	rs10947262	20305777	Nakajima M	2010-03-18	PLoS One	New sequence variants in HLA class II/III region associated with susceptibility to knee osteoarthritis identified by genome-wide association study.	Knee osteoarthritis	899 Japanese ancestry cases, 3,396 Japanese ancestry controls	167 Japanese ancestry cases, 347 Japanese ancestry controls, 813 European ancestry  cases, 1,071 European ancestry controls,	6p21.32	HLA-DQA2, HLA-DQB1, BTNL2	rs10947262-T	0.42	5E-9		1.31	[1.20-1.44]	Illumina [459393]	N
614	chr6_cox_hap2	3844104	3844105	rs3806156	20410501	Jin Y	2010-04-21	N Engl J Med	Variant of TYR and autoimmunity susceptibility loci in generalized vitiligo.	Vitiligo	1,392 European ancestry cases, 2,629 European ancestry controls	647 European ancestry cases, 1,056 European ancestry controls, 183 European ancestry trios, 1,383 European ancestry individuals from 332 families	6p21.32	HLA-DRA, BTNL2, HLA-DQA1	rs3806156-T	0.37	7E-19		1.42	[1.32-1.54]	Illumina [520460]	N
614	chr6_cox_hap2	3844207	3844208	rs3806157	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	BTNL2	rs3806157-G	NR	4E-8		0.0162252	[0.01-0.022] unit increase	Affymetrix [321114] (imputed)	N
614	chr6_cox_hap2	3845001	3845002	rs2395158	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	6p21.32	BTNL2	rs2395158-A	0.830652	5E-40		0.0345684	[0.029-0.04] unit increase	Affymetrix [NR] (imputed)	N
614	chr6_cox_hap2	3846379	3846380	rs3763309	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls	NA	6p21.32	HLA-DRA, BTNL2	rs3763309-A	0.21	1E-18		0.13	[0.091-0.169] unit increase	Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
614	chr6_cox_hap2	3846379	3846380	rs3763309	24449572	Orozco G	2014-01-01	Arthritis Rheumatol	Novel rheumatoid arthritis susceptibility locus at 22q12 identified in an extended UK genome-wide association study.	Rheumatoid arthritis	3,034 European ancestry cases, 5,271 European ancestry controls	4,726 European ancestry cases, 2,625 European ancestry controls	6p21.32	HLA-DRB1	rs3763309-?		2E-124		2.3	[2.14-2.46]	Affymetrix, Illumina [1831729] (imputed)	N
614	chr6_cox_hap2	3846582	3846583	rs3763311	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Cancer	56,634 White British ancestry cases, 218,196 White British ancestry controls	NA	6p21.32		rs3763311-?	NR	1E-5		0.967842	[0.95-0.98]	NR [688737]	N
614	chr6_cox_hap2	3846754	3846755	rs3763312	26039976	Wei Z	2015-06-17	Sci Rep	Genome-Wide Association Studies of HIV-1 Host Control in Ethnically Diverse Chinese Populations.	HIV-1 viral setpoint	326 Han Chinese ancestry cases, 58 Dai Chinese ancestry cases, 40 Jingpo Chinese ancestry cases, 83 Uygur Chinese ancestry cases, 11 Hui Chinese ancestry cases, 20 East Asian cases	NA	6p21.32	BTNL2, HLA-DRA	rs3763312-A	0.15	6E-6	(Han)	0.4002	unit decrease	Illumina [up to 528294]	N
614	chr6_cox_hap2	3846766	3846767	rs17208853	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Skin reflectance (Melanin index)	720 South Asian ancestry individuals		6p21.32	NR	rs17208853-C	NR	8E-6		0.649209	[0.36-0.93] unit decrease	Affymetrix, Illumina [at least 398118] (imputed)	N
614	chr6_cox_hap2	3846877	3846878	rs3763313	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.32		rs3763313-C	0.17885300000000004	1E-26		1.0591807	[1.05-1.08]	Affymetrix, Illumina [9851866] (imputed)	N
614	chr6_cox_hap2	3846877	3846878	rs3763313	20041166	Fellay J	2009-12-24	PLoS Genet	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	6p21.32	NOTCH4, BTNL2	rs3763313-?	NR	2E-6	(progression)			Illumina [NR]	N
614	chr6_cox_hap2	3846923	3846924	rs9268500	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (drugs affecting bone structure and mineralization)	7,870 European ancestry cases, 207,798 European ancestry controls	NA	6p21.32	BTNL2	rs9268500-T	0.0508279	2E-8		0.20306516	[0.13-0.27] unit increase	Affymetrix [7288503] (imputed)	N
614	chr6_cox_hap2	3847194	3847195	rs3763317	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	BTNL2	rs3763317-T	NR	1E-12		0.0200715	[0.015-0.026] unit increase	Affymetrix [319769] (imputed)	N
614	chr6_cox_hap2	3847194	3847195	rs3763317	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	BTNL2	rs3763317-T	NR	1E-10		0.0202983	[0.014-0.026] unit increase	Affymetrix [323858] (imputed)	N
614	chr6_cox_hap2	3847194	3847195	rs3763317	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	BTNL2	rs3763317-T	NR	6E-12		0.0194272	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
614	chr6_cox_hap2	3847194	3847195	rs3763317	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	BTNL2	rs3763317-T	NR	2E-9		0.0188282	[0.013-0.025] unit increase	Affymetrix [127266] (imputed)	N
614	chr6_cox_hap2	3847194	3847195	rs3763317	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	BTNL2	rs3763317-T	NR	2E-14		0.0235125	[0.017-0.03] unit decrease	Affymetrix [323123] (imputed)	N
614	chr6_cox_hap2	3847194	3847195	rs3763317	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	BTNL2	rs3763317-T	NR	2E-13		0.0209669	[0.015-0.027] unit increase	Affymetrix [321169] (imputed)	N
614	chr6_cox_hap2	3847194	3847195	rs3763317	23028341	Yang X	2012-09-13	PLoS Genet	Genome-wide association study for serum complement C3 and C4 levels in healthy Chinese subjects.	Complement C3 and C4 levels	1,999 Han Chinese ancestry male individuals	1,496 Han Chinese ancestry male individuals	6p21.32	HLA-DRB	rs3763317-C	0.37	9E-66	(Serum level of C4)	0.12	[0.10-0.14] g/L increase	Illumina [1940245] (imputed)	N
614	chr6_cox_hap2	3847459	3847460	rs116835963	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs116835963-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
614	chr6_cox_hap2	3847814	3847815	rs9268505	33713768	Akenroye AT	2021-03-10	J Allergy Clin Immunol	Genome-wide Association study of Asthma, Total IgE, and Lung function in a Cohort of Peruvian Children.	Serum IgE levels	727 Peruvian individuals	NA	6p21.32		rs9268505-?	NR	6E-8		0.211	unit increase	Illumina [NR] (imputed)	N
614	chr6_cox_hap2	3849717	3849717	rs574027387	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs574027387-A	0.673	3E-23	(conditional)	1.376	[1.31-1.44]	Illumina [11270530] (imputed)	N
614	chr6_cox_hap2	3849786	3849787	rs3129962	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	6p21.32	BTNL2	rs3129962-G	0.870649	8E-18		0.0243898	[0.019-0.03] unit increase	Affymetrix [NR] (imputed)	N
614	chr6_cox_hap2	3849892	3849893	rs9268516	33328473	Ahluwalia TS	2020-12-16	Nat Commun	FUT2-ABO epistasis increases the risk of early childhood asthma and Streptococcus pneumoniae respiratory illnesses.	Childhood asthma with severe exacerbations	2,866 European ancestry cases,  65,415 European ancestry controls	NA	6p21.32	NR	rs9268516-A	NR	5E-10		0.1936	[0.13-0.25] unit increase	Illumina [up to 525976] (imputed)	N
614	chr6_cox_hap2	3849892	3849893	rs9268516	23028483	Ramasamy A	2012-09-28	PLoS One	Genome-wide association studies of asthma in population-based cohorts confirm known and suggested loci and identify an additional association near HLA.	Asthma	1,716 European ancestry cases, 16,888 European ancestry controls	4,035 European ancestry cases, 11,251 European ancestry controls	6p21.32	HLA-DRA, BTNL2	rs9268516-T	0.24	1E-8		1.15	[1.10-1.21]	Affymetrix, Illumina [~ 2200000] (imputed)	N
614	chr6_cox_hap2	3850139	3850140	rs9405098	23321320	Urabe Y	2013-01-12	J Hepatol	A genome-wide association study of HCV-induced liver cirrhosis in the Japanese population identifies novel susceptibility loci at the MHC region.	Hepatitis C induced liver cirrhosis	682 Japanese ancestry cases, 1,045 Japanese ancestry controls	936 Japanese ancestry cases, 3,809 Japanese ancestry controls	6p21.32	intergenic	rs9405098-A	0.253	1E-10		1.37	[1.24-1.51]	Illumina [431618]	N
614	chr6_cox_hap2	3851310	3851311	rs9380294	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p21.32	BTNL2, HLA-DRA	rs9380294-C	0.01	7E-6	(EA)	4.76	[2.25-10.07]	Illumina [up to 547389]	N
614	chr6_cox_hap2	3852137	3852138	rs7759742	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI in non-smokers	75,379 European ancestry women, 45,811 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	6p21.32	BTNL2	rs7759742-A	0.5117	1E-7		0.0144	[0.0091-0.0197] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
614	chr6_cox_hap2	3852137	3852138	rs7759742	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (joint analysis main effects and smoking interaction)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	6p21.32	BTNL2	rs7759742-A	0.5117	1E-8				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
614	chr6_cox_hap2	3852137	3852138	rs7759742	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	6p21.32	BTNL2	rs7759742-A	0.5117	3E-6	(men)	0.0248	[0.014-0.035] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
614	chr6_cox_hap2	3852137	3852138	rs7759742	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	6p21.32	BTNL2	rs7759742-A	0.5117	1E-9		0.0217	[0.015-0.029] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
614	chr6_cox_hap2	3852137	3852138	rs7759742	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex x age interaction (4df test)	up to 43,776 European ancestry men aged <50, up to 50,526 European ancestry women aged <50, up to 69,944 European ancestry men aged >50, up to 88,129 European ancestry women aged >50	NA	6p21.32	NR	rs7759742-A	0.509001212874385	2E-12				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
614	chr6_cox_hap2	3852137	3852138	rs7759742	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p21.32	BTNL2	rs7759742-A	0.517	2E-11		0.0224	[0.016-0.029] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
614	chr6_cox_hap2	3852137	3852138	rs7759742	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p21.32	BTNL2	rs7759742-A	0.5158	5E-8	(women)	0.0241	[0.015-0.033] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
614	chr6_cox_hap2	3852137	3852138	rs7759742	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p21.32	BTNL2	rs7759742-A	0.5154	4E-6	(men)	0.0223	[0.013-0.032] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
614	chr6_cox_hap2	3852137	3852138	rs7759742	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p21.32	BTNL2	rs7759742-A	0.511	4E-11	(EA)	0.0226	[0.016-0.029] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
614	chr6_cox_hap2	3852137	3852138	rs7759742	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p21.32	BTNL2	rs7759742-A	0.5107	2E-7	(EA, women)	0.0237	[0.015-0.033] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
614	chr6_cox_hap2	3852137	3852138	rs7759742	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p21.32	BTNL2	rs7759742-A	0.5106	5E-6	(EA, men)	0.0226	[0.013-0.032] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
614	chr6_cox_hap2	3852672	3852672	rs143325653	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Scarlet fever	6,812 European ancestry cases, 113,837 European ancestry controls	NA	6p21.32	NR	rs143325653-?	NR	6E-7		0.0908	[0.055-0.126] unit increase	Illumina [at least 560000] (imputed)	N
614	chr6_cox_hap2	3852672	3852672	rs143325653	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p21.32	NR	rs143325653-?	NR	3E-20		0.1121	[0.088-0.136] unit decrease	Illumina [at least 560000] (imputed)	N
614	chr6_cox_hap2	3853460	3853461	rs4959027	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	Blood glucose levels	291,107 British ancestry individuals	NA	6p21.32	TBC1D22B	rs4959027-A	0.234405	5E-6		0.00399988	[0.0023-0.0057] unit decrease	Affymetrix [9463307] (imputed)	N
614	chr6_cox_hap2	3853460	3853461	rs4959027	23449627	Cousminer DL	2013-02-27	Hum Mol Genet	Genome-wide association and longitudinal analyses reveal genetic loci linking pubertal height growth, pubertal timing and childhood adiposity.	Pubertal anthropometrics	up to 5,043 European ancestry males, up to 5,756 European ancestry females	NA	6p21.32	TAP2, HLA-DRA	rs4959027-G	0.82	9E-7	(Pubertal growth)	0.09	[0.057-0.123] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
614	chr6_cox_hap2	3853548	3853549	rs4959028	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Effector Memory CD4+ T cell %CD4+ T cell	3,427 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs4959028-G	0.22877	3E-10		0.2111	[0.15-0.28] unit increase	Illumina [18349913] (imputed)	N
614	chr6_cox_hap2	3853618	3853619	rs6930571	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.32	BTNL2	rs6930571-T	0.1659	2E-8		0.0561	[0.037-0.076] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
614	chr6_cox_hap2	3853983	3853984	rs6912701	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.32	NR	rs6912701-T	0.014	6E-7	(women)	0.704901	[0.43-0.98] unit increase	Affymetrix [up to 8900000] (imputed)	N
614	chr6_cox_hap2	3853983	3853984	rs6912701	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.32	NR	rs6912701-T	0.014	3E-9		0.454746	[0.31-0.6] unit increase	Affymetrix [up to 8900000] (imputed)	N
614	chr6_cox_hap2	3854937	3854938	rs9268541	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6p21.32		rs9268541-C	0.054698	1E-10		0.03155108	[0.022-0.041] unit increase	Affymetrix [93095623] (imputed)	N
614	chr6_cox_hap2	3855302	3855303	rs72847996	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs72847996-A	0.19	4E-8		4.04	[3.10-5.28]	Illumina [NR] (imputed)	N
614	chr6_cox_hap2	3855343	3855344	rs80032720	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	IgA nephropathy	1,180 East Asian ancestry cases, 899 East Asian ancestry controls	NA			rs80032720-A	NR	9E-8		0.524129	[0.33-0.72] unit decrease	Illumina [NR] (imputed)	N
614	chr6_cox_hap2	3855809	3855810	rs3135377	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	BTNL2	rs3135377-A	NR	2E-8		0.0200714	[0.013-0.027] unit increase	Affymetrix [323123] (imputed)	N
614	chr6_cox_hap2	3858220	3858221	rs2395163	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	BTNL2	rs2395163-C	NR	7E-9		0.0197156	[0.013-0.026] unit increase	Affymetrix [321114] (imputed)	N
614	chr6_cox_hap2	3858220	3858221	rs2395163	22451204	Pankratz N	2012-03-01	Ann Neurol	Meta-analysis of Parkinson's disease: identification of a novel locus, RIT2.	Parkinson's disease	4,238 European ancestry cases, 4,239 European ancestry controls	3,738 European ancestry cases, 2,111 European ancestry controls	6p21.32	LOC642072	rs2395163-?	NR	3E-11		1.24	[NR]	Illumina [2500000] (imputed)	N
614	chr6_cox_hap2	3858686	3858687	rs2395166	33736632	Zeng Z	2021-03-18	BMC Med Genomics	Genome-wide association study identifies new loci associated with risk of HBV infection and disease progression.	Persistent hepatitis B virus infection	587 Chinese ancestry persistent cases, 275 Chinese ancestry clearance controls	NA	6p21.32	HLA-DRA	rs2395166-C	0.2182	1E-7		0.4534	NR	Affymetrix [607153]	N
614	chr6_cox_hap2	3858686	3858687	rs2395166	28424481	Sugiura-Ogasawara M	2017-04-20	J Hum Genet	The first genome-wide association study identifying new susceptibility loci for obstetric antiphospholipid syndrome.	Obstetric antiphospholipid syndrome	115 Japanese ancestry female cases, 419 Japanese ancestry male and female controls	NA	6p21.32	HLA-DRA	rs2395166-T	0.71	3E-6		2.564103	[1.69-3.85]	Affymetrix [426344]	N
614	chr6_cox_hap2	3858728	3858729	rs9461744	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4+ CD8dim T cell Absolute Count	3,652 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9461744-G	0.21272	7E-12		0.2434	[0.17-0.31] unit increase	Illumina [18427348] (imputed)	N
614	chr6_cox_hap2	3858728	3858729	rs9461744	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4+ CD8dim T cell %lymphocyte	3,668 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9461744-G	0.21247	8E-19		0.3015	[0.24-0.37] unit increase	Illumina [18430788] (imputed)	N
614	chr6_cox_hap2	3858728	3858729	rs9461744	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4+ CD8dim T cell %leukocyte	3,668 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9461744-G	0.21247	1E-16		0.2827	[0.22-0.35] unit increase	Illumina [18430788] (imputed)	N
614	chr6_cox_hap2	3858957	3858958	rs2213581	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	6p21.32	BTNL2	rs2213581-T	0.2346	2E-11		0.002	[0.0014-0.0026] unit increase	Affymetrix [15275733] (imputed)	N
614	chr6_cox_hap2	3859554	3859555	rs116869525	26151496	Chen PL	2015-07-07	Nat Commun	Genetic determinants of antithyroid drug-induced agranulocytosis by human leukocyte antigen genotyping and genome-wide association study.	Thionamide-induced agranulocytosis in Graves' disease	21 East Asian ancestry cases with agranulocytosis, 662 East Asian ancestry cases without agranulocytosis	21 East Asian ancestry cases with agranulocytosis, 546 East Asian ancestry cases without agranulocytosis	6p21.32	HLA-DRB1*08:03	rs116869525-T	0.083	1E-8	(trend)	4.16	[2.50-6.90] (allelic)	Affymetrix [522980]	N
614	chr6_cox_hap2	3859666	3859667	rs3135365	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PRTN3	5,361 Icelandic ancestry individuals	NA	6p21.32		rs3135365-C	0.2736	5E-56		0.319492	[0.28-0.36] unit decrease	Illumina [7506463] (imputed)	N
614	chr6_cox_hap2	3859666	3859667	rs3135365	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p21.32	BTNL2	rs3135365-C	0.022	9E-6		0.202	[0.11-0.29] unit increase	Affymetrix, Illumina [7374092] (imputed)	N
614	chr6_cox_hap2	3859716	3859717	rs9268557	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.32		rs9268557-T	0.525	2E-25				Affymetrix [10369434] (imputed)	N
614	chr6_cox_hap2	3859716	3859717	rs9268557	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.32		rs9268557-T	0.525	3E-16				Affymetrix [10369434] (imputed)	N
614	chr6_cox_hap2	3859716	3859717	rs9268557	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.32		rs9268557-T	0.525	1E-45				Affymetrix [10369434] (imputed)	N
614	chr6_cox_hap2	3859716	3859717	rs9268557	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	BTNL2	rs9268557-C	NR	1E-12		0.0202435	[0.015-0.026] unit increase	Affymetrix [321169] (imputed)	N
614	chr6_cox_hap2	3859716	3859717	rs9268557	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p21.32	NR	rs9268557-?	NR	4E-15		0.0947	[0.071-0.118] unit increase	Illumina [at least 560000] (imputed)	N
614	chr6_cox_hap2	3859716	3859717	rs9268557	26272072	Jiang X	2015-08-13	Rheumatology (Oxford)	An Immunochip-based interaction study of contrasting interaction effects with smoking in ACPA-positive versus ACPA-negative rheumatoid arthritis.	ACPA-positive rheumatoid arthritis (smoking interaction)	340 European ancestry never-smoker cases, 493 European ancestry ever-smoker cases, 746 European ancestry never-smoker controls, 994 European ancestry ever-smoker controls	187 European ancestry never-smoker cases, 421 European ancestry ever-smoker cases, 461 European ancestry never-smoker controls, 447 European ancestry ever-smoker controls	6p21.32	NR	rs9268557-?	NR	3E-10	(adjusted for HLA shared epitope)	2.5	[1.92-3.7]	Illumina [133648] (imputed)	N
614	chr6_cox_hap2	3859802	3859803	rs9268559	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	6p21.32		rs9268559-?	NR	5E-8				Affymetrix [NR] (imputed)	N
614	chr6_cox_hap2	3859802	3859803	rs9268559	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	6p21.32		rs9268559-G	0.023054	2E-12		0.054041814	[0.039-0.069] unit decrease	Affymetrix [93095623] (imputed)	N
614	chr6_cox_hap2	3859802	3859803	rs9268559	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.32	NR	rs9268559-G	0.013	4E-7	(women)	0.762177	[0.47-1.05] unit increase	Affymetrix [up to 8900000] (imputed)	N
614	chr6_cox_hap2	3859802	3859803	rs9268559	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.32	NR	rs9268559-G	0.013	2E-8		0.442409	[0.29-0.6] unit increase	Affymetrix [up to 8900000] (imputed)	N
614	chr6_cox_hap2	3859923	3859924	rs9268560	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	BTNL2	rs9268560-C	NR	5E-17		0.023445	[0.018-0.029] unit decrease	Affymetrix [319769] (imputed)	N
614	chr6_cox_hap2	3859923	3859924	rs9268560	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	BTNL2	rs9268560-C	NR	1E-10		0.0201058	[0.014-0.026] unit decrease	Affymetrix [323858] (imputed)	N
614	chr6_cox_hap2	3859923	3859924	rs9268560	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	BTNL2	rs9268560-C	NR	1E-15		0.0224411	[0.017-0.028] unit decrease	Affymetrix [319769] (imputed)	N
614	chr6_cox_hap2	3859923	3859924	rs9268560	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	BTNL2	rs9268560-C	NR	4E-9		0.0183123	[0.012-0.024] unit decrease	Affymetrix [127266] (imputed)	N
614	chr6_cox_hap2	3859923	3859924	rs9268560	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	BTNL2	rs9268560-C	NR	3E-15		0.0220981	[0.017-0.028] unit increase	Affymetrix [321016] (imputed)	N
614	chr6_cox_hap2	3859923	3859924	rs9268560	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	BTNL2	rs9268560-C	NR	1E-17		0.0260901	[0.02-0.032] unit increase	Affymetrix [323123] (imputed)	N
614	chr6_cox_hap2	3859954	3859955	rs28732209	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	334,468 European ancestry, NR ancestry individuals	NA	6p21.32		rs28732209-?	NR	5E-8				Affymetrix [NR] (imputed)	N
614	chr6_cox_hap2	3859956	3859957	rs3135364	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C4A;C4B	5,353 Icelandic ancestry individuals	NA	6p21.32		rs3135364-G	0.2232	3E-39		0.289407	[0.25-0.33] unit decrease	Illumina [7506463] (imputed)	N
614	chr6_cox_hap2	3859956	3859957	rs3135364	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	6p21.32	NR	rs3135364-G	0.221478	4E-13		0.0590942	[0.043-0.075] unit increase	Affymetrix [17914406] (imputed)	N
614	chr6_cox_hap2	3860059	3860060	rs3135363	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	BTNL2	rs3135363-G	NR	2E-11		0.0237256	[0.017-0.031] unit decrease	Affymetrix [323858] (imputed)	N
614	chr6_cox_hap2	3860059	3860060	rs3135363	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	BTNL2	rs3135363-G	NR	1E-10		0.022911	[0.016-0.03] unit decrease	Affymetrix [127266] (imputed)	N
614	chr6_cox_hap2	3860059	3860060	rs3135363	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on CD33- HLA DR+	1,635 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs3135363-G	0.17311	2E-13		0.3649	[0.27-0.46] unit increase	Illumina [16999305] (imputed)	N
614	chr6_cox_hap2	3860059	3860060	rs3135363	24282030	Pan L	2013-11-28	Hum Mol Genet	A genome-wide association study identifies polymorphisms in the HLA-DR region associated with non-response to hepatitis B vaccination in Chinese Han populations.	Hepatitis B vaccine response	108 Han Chinese ancestry high-responder cases, 77 Han Chinese ancestry non-responder controls	1,336 Han Chinese ancestry high-responder cases, 420 Han Chinese ancestry non-responder controls	6p21.32	HLA-DR	rs3135363-?	NR	8E-7		1.51	[1.28-1.78]	Illumina [588026]	N
614	chr6_cox_hap2	3860059	3860060	rs3135363	23321320	Urabe Y	2013-01-12	J Hepatol	A genome-wide association study of HCV-induced liver cirrhosis in the Japanese population identifies novel susceptibility loci at the MHC region.	Hepatitis C induced liver cirrhosis	682 Japanese ancestry cases, 1,045 Japanese ancestry controls	936 Japanese ancestry cases, 3,809 Japanese ancestry controls	6p21.32	intergenic	rs3135363-C	0.702	1E-10		1.37	[1.24-1.51]	Illumina [431618]	N
614	chr6_cox_hap2	3860059	3860060	rs3135363	21764829	Png E	2011-07-15	Hum Mol Genet	A genome-wide association study of hepatitis B vaccine response in an Indonesian population reveals multiple independent risk variants in the HLA region.	Hepatitis B vaccine response	1,683 Indonesian ancestry individuals	1,931 Indonesian ancestry individuals	6p21.32	HLA-DR	rs3135363-?	NR	7E-22		1.53	[1.35-1.74]	Illumina [455508]	N
614	chr6_cox_hap2	3860743	3860744	rs2894255	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	BTNL2	rs2894255-T	NR	2E-17		0.0362414	[0.028-0.045] unit decrease	Affymetrix [323858] (imputed)	N
614	chr6_cox_hap2	3860743	3860744	rs2894255	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	BTNL2	rs2894255-T	NR	7E-16		0.0344273	[0.026-0.043] unit decrease	Affymetrix [127266] (imputed)	N
614	chr6_cox_hap2	3860743	3860744	rs2894255	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p21.32	BTNL2	rs2894255-T	NR	2E-11		0.0284523	[0.02-0.037] unit decrease	Affymetrix [323858] (imputed)	N
614	chr6_cox_hap2	3860995	3860996	rs3135359	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p21.32	HLA-DRADQA1	rs3135359-C	0.71	9E-21		1.21	[1.18-1.24]	Illumina [at least 560000] (imputed)	N
614	chr6_cox_hap2	3863195	3863196	rs6935999	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.32	NR	rs6935999-A	0.011	8E-8	(women)	0.839311	[0.54-1.14] unit increase	Affymetrix [up to 8900000] (imputed)	N
614	chr6_cox_hap2	3863195	3863196	rs6935999	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.32	NR	rs6935999-A	0.011	3E-11		0.563282	[0.4-0.73] unit increase	Affymetrix [up to 8900000] (imputed)	N
614	chr6_cox_hap2	3863315	3863316	rs3135353	33941608	Khan A	2021-05-03	J Am Soc Nephrol	Medical Records-Based Genetic Studies of the Complement System.	Complement C4 levels	3,247 European ancestry individuals, 600 African ancestry individuals, 151 East Asian ancestry individuals	NA	6p21.32	C4	rs3135353-C	0.15	2E-33	(EA)	0.4	[0.34-0.45] unit increase	NR [NR] (imputed)	N
614	chr6_cox_hap2	3863315	3863316	rs3135353	33941608	Khan A	2021-05-03	J Am Soc Nephrol	Medical Records-Based Genetic Studies of the Complement System.	Complement C4 levels	3,247 European ancestry individuals, 600 African ancestry individuals, 151 East Asian ancestry individuals	NA	6p21.32	C4	rs3135353-C	0.12	5E-35		0.4	[0.34-0.45] unit increase	NR [NR] (imputed)	N
614	chr6_cox_hap2	3863419	3863420	rs3135350	24962563	Rubicz R	2014-07-01	Genet Epidemiol	Genome-wide genetic and transcriptomic investigation of variation in antibody response to dietary antigens.	Food antigen IgG levels	1,367 Mexican Americans from 63 families	NA	6p21.32	NOTCH4, HLA-DRA, BTNL2	rs3135350-G	0.046	9E-8	(Gliadin)	0.51	[NR] unit increase	Illumina [944565] (imputed)	N
614	chr6_cox_hap2	3866081	3866082	rs9268576	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p21.32	HLA-DRA	rs9268576-C	0.359	2E-8		0.111	[0.072-0.15] unit decrease	Affymetrix, Illumina [7374092] (imputed)	N
614	chr6_cox_hap2	3866081	3866082	rs9268576	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on CD33+ HLA DR+ CD14dim	1,578 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9268576-C	0.46709	3E-10		0.262	[0.18-0.34] unit decrease	Illumina [16958370] (imputed)	N
614	chr6_cox_hap2	3866081	3866082	rs9268576	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on CD33+ HLA DR+ CD14-	1,579 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9268576-C	0.46711	3E-20		0.3825	[0.3-0.46] unit decrease	Illumina [16961968] (imputed)	N
614	chr6_cox_hap2	3866096	3866097	rs2105903	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in diabetes	70,762 European ancestry individuals, 20,967 African American individuals	NA	6p21.32	HLA-DRA	rs2105903-A	0.838	4E-12		0.821	[0.59-1.05] unit increase	Affymetrix [NR] (imputed)	N
614	chr6_cox_hap2	3866166	3866167	rs3129843	26362759	Rothwell S	2015-09-11	Ann Rheum Dis	Dense genotyping of immune-related loci in idiopathic inflammatory myopathies confirms HLA alleles as the strongest genetic risk factor and suggests different genetic background for major clinical subgroups.	Idiopathic inflammatory myopathy	2,556 European ancestry cases, 15,651 European ancestry controls		6p21.32	HLA	rs3129843-G	0.11	9E-133		2.74	[2.53-2.97]	Illumina [90536]	N
614	chr6_cox_hap2	3866166	3866167	rs3129843	26362759	Rothwell S	2015-09-11	Ann Rheum Dis	Dense genotyping of immune-related loci in idiopathic inflammatory myopathies confirms HLA alleles as the strongest genetic risk factor and suggests different genetic background for major clinical subgroups.	Dermatomyositis or juvenile dermatomyositis	879 European dermatomyositis cases, 15,651 European juvenile dermatomyositis ancestry controls		6p21.32	HLA	rs3129843-G		2E-48		2.18	[1.97-2.42]	Illumina [90536]	N
614	chr6_cox_hap2	3866585	3866586	rs78566116	29782485	Rueger S	2018-05-21	PLoS Genet	Evaluation and application of summary statistic imputation to discover new height-associated loci.	Height	253,288 European ancestry individuals	336,474 European ancestry individuals	6p21.32	intergenic	rs78566116-T	0.0766992859032002	4E-12		0.011949114	unit decrease	NR [9276018] (imputed)	N
614	chr6_cox_hap2	3867748	3867749	rs3129849	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PRTN3	5,367 Icelandic ancestry individuals	NA	6p21.32		rs3129849-A	0.2684	2E-16		0.176044	[0.13-0.22] unit increase	Illumina [7506463] (imputed)	N
614	chr6_cox_hap2	3868241	3868242	rs3129852	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DRA	rs3129852-G	NR	3E-8		0.019398	[0.013-0.026] unit decrease	Affymetrix [319769] (imputed)	N
614	chr6_cox_hap2	3868320	3868321	rs17202717	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs17202717-T	0.2	9E-9		4.33	[3.31-5.67]	Illumina [NR] (imputed)	N
614	chr6_cox_hap2	3869105	3869106	rs3129853	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Prostate cancer	7,438 White British ancestry cases, 118,206 White British ancestry controls	NA	6p21.32		rs3129853-?	NR	2E-6		0.913903	[0.88-0.95]	NR [680312]	N
614	chr6_cox_hap2	3869623	3869624	rs4321864	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DRA	rs4321864-A	NR	1E-10		0.019351	[0.013-0.025] unit increase	Affymetrix [319769] (imputed)	N
614	chr6_cox_hap2	3869623	3869624	rs4321864	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DRA	rs4321864-A	NR	5E-10		0.0188026	[0.013-0.025] unit increase	Affymetrix [319769] (imputed)	N
614	chr6_cox_hap2	3869623	3869624	rs4321864	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DRA	rs4321864-A	NR	2E-11		0.0204042	[0.014-0.026] unit increase	Affymetrix [321169] (imputed)	N
614	chr6_cox_hap2	3869623	3869624	rs4321864	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on Hematopoietic Stem Cell	1,634 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs4321864-A	0.29062	4E-9		0.2523	[0.17-0.34] unit increase	Illumina [16999215] (imputed)	N
614	chr6_cox_hap2	3869623	3869624	rs4321864	26450422	DeLorenze GN	2015-10-08	J Infect Dis	Polymorphisms in HLA Class II Genes Are Associated With Susceptibility to Staphylococcus aureus Infection in a White Population.	Staphylococcus aureus infection	4,701 European ancestry cases, 45,344 European ancestry controls	NA	6p21.32	HLA-DRA	rs4321864-A	NR	9E-8		1.13	[NR]	Affymetrix [at least 584535] (imputed)	N
614	chr6_cox_hap2	3871375	3871376	rs3129859	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	6p21.32	NR	rs3129859-G	0.67	1E-12		1.06	[1.04-1.08]	Illumina [20370935] (imputed)	N
614	chr6_cox_hap2	3871375	3871376	rs3129859	28130311	Tan W	2017-01-27	Gut	Genome-wide association study identifies HLA-DR variants conferring risk of HBV-related acute-on-chronic liver failure.	Acute-on-chronic liver failure in hepatitis B	389 Chinese ancestry cases, 391 Chinese ancestry controls	901 Chinese ancestry cases,  1,686 Chinese ancestry controls	6p21.32	HLA-DQB1, HLA-DRA	rs3129859-C	0.15	7E-19		1.83	[1.60-2.09]	Affymetrix [654960]	N
614	chr6_cox_hap2	3871472	3871473	rs17496307	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs17496307-T	0.2	9E-9		4.33	[3.31-5.67]	Illumina [NR] (imputed)	N
614	chr6_cox_hap2	3871515	3871516	rs3129860	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CFTR	5,361 Icelandic ancestry individuals	NA	6p21.32		rs3129860-A	0.2255	1E-13		0.165583	[0.12-0.21] unit increase	Illumina [7506463] (imputed)	N
614	chr6_cox_hap2	3871515	3871516	rs3129860	23321320	Urabe Y	2013-01-12	J Hepatol	A genome-wide association study of HCV-induced liver cirrhosis in the Japanese population identifies novel susceptibility loci at the MHC region.	Hepatitis C induced liver cirrhosis	682 Japanese ancestry cases, 1,045 Japanese ancestry controls	936 Japanese ancestry cases, 3,809 Japanese ancestry controls	6p21.32	intergenic	rs3129860-A	0.231	1E-9		1.36	[1.22-1.49]	Illumina [431618]	N
614	chr6_cox_hap2	3871653	3871654	rs3135338	20159113	Jakkula E	2010-02-12	Am J Hum Genet	Genome-wide association study in a high-risk isolate for multiple sclerosis reveals associated variants in STAT3 gene.	Multiple sclerosis	68 Finland founder cases, 136 Finland founder controls	83 Finland founder cases, 365 Finland founder controls 3,285 European ancestry cases, 6,379 European ancestry controls, 1,202 cases, 3,399 controls	6p21.32	HLA	rs3135338-A	0.13	2E-25		3.43	[NR]	Illumina [297343]	N
614	chr6_cox_hap2	3871699	3871700	rs9268610	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on CD33dim HLA DR+ CD11b-	1,635 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9268610-C	0.23837	2E-14		0.3692	[0.28-0.46] unit decrease	Illumina [16999305] (imputed)	N
614	chr6_cox_hap2	3873325	3873326	rs9268615	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DRA	rs9268615-A	NR	5E-9		0.0185721	[0.012-0.025] unit decrease	Affymetrix [323123] (imputed)	N
614	chr6_cox_hap2	3873555	3873556	rs28732213	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs28732213-A	0.041	4E-80	(Ubiquitin carboxyl-terminal hydrolase 25, USP25.9215.117.3)	1.13	[1.01-1.25] unit increase	Affymetrix [10572788] (imputed)	N
614	chr6_cox_hap2	3874827	3874828	rs3129868	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	6p21.32	NR	rs3129868-?	NR	6E-10		0.077	[0.052-0.101] unit increase	Illumina [at least 560000] (imputed)	N
614	chr6_cox_hap2	3876315	3876316	rs9268628	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on HLA DR+ Natural Killer	2,971 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9268628-C	0.60641	2E-23		0.2999	[0.24-0.36] unit decrease	Illumina [17967059] (imputed)	N
614	chr6_cox_hap2	3876779	3876780	rs3129871	23472185	Mero IL	2013-03-05	PLoS One	Oligoclonal band status in Scandinavian multiple sclerosis patients is associated with specific genetic risk alleles.	Multiple sclerosis (OCB status)	1,367 European ancestry OCB positive cases, 161 European ancestry OCB negative cases, 428 European ancestry controls	NA	6p21.32	HLA-DRA	rs3129871-?	NR	1E-16	(OCB positive vs. controls)	1.98	[1.68-2.32]	Illumina [495970]	N
614	chr6_cox_hap2	3876779	3876780	rs3129871	23472185	Mero IL	2013-03-05	PLoS One	Oligoclonal band status in Scandinavian multiple sclerosis patients is associated with specific genetic risk alleles.	Multiple sclerosis (OCB status)	1,367 European ancestry OCB positive cases, 161 European ancestry OCB negative cases	3,029 European ancestry OCB positive cases, 374 European ancestry OCB negative cases	6p21.32	HLA-DRA	rs3129871-?	NR	6E-15		1.72	[1.59-1.86]	Illumina [495970]	N
614	chr6_cox_hap2	3876910	3876911	rs9268633	33143745	Andlauer TFM	2020-11-04	BMC Med	Treatment- and population-specific genetic risk factors for anti-drug antibodies against interferon-beta: a GWAS.	Neutralising antibody response to interferon beta therapy in multiple sclerosis (antibody titre; IFN?-1a subcutaneous and intramuscular)	up to 2,000 German and Swedish ancestry individuals	up to 757 German and Swedish ancestry individuals	6p21.32		rs9268633-A	0.39	1E-17		0.2	[-0.0392-0.0392] unit increase	Illumina [8550834] (imputed)	N
614	chr6_cox_hap2	3877756	3877757	rs2395179	29534301	Nishida N	2018-03-13	Hepatology	Key HLA-DRB1-DQB1 haplotypes and role of the BTNL2 gene for response to a hepatitis B vaccine.	Response to hepatitis B vaccine	107 Japanese ancestry low responder individuals, 351 Japanese ancestry intermediate responder individuals, 735 Japanese ancestry high responder individuals	NA	6p21.32	HLA-DRA	rs2395179-?		5E-14		0.221	unit decrease	Affymetrix [427664]	N
614	chr6_cox_hap2	3878498	3878499	rs9268644	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DRA	rs9268644-A	NR	4E-13		0.022277	[0.016-0.028] unit increase	Affymetrix [323123] (imputed)	N
614	chr6_cox_hap2	3878498	3878499	rs9268644	28425483	Qiu F	2017-04-20	Nat Commun	A genome-wide association study identifies six novel risk loci for primary biliary cholangitis.	Primary biliary cholangitis	1,122 Han Chinese ancestry cases, 4,036 Han Chinese ancestry controls	907 Han Chinese ancestry cases, 2,127 Han Chinese ancestry controls	6p21.32	HLA-DRA	rs9268644-?	0.823	8E-31		1.9607843	[1.75-2.22]	Illumina [776516]	N
614	chr6_cox_hap2	3878949	3878950	rs3135394	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p21.32	HLA-DRA	rs3135394-G	0.344	3E-33				Illumina [118177]	N
614	chr6_cox_hap2	3878949	3878950	rs3135394	24097067	Lessard CJ	2013-11-01	Nat Genet	Variants at multiple loci implicated in both innate and adaptive immune responses are associated with Sjogren's syndrome.	Sjogren's syndrome	395 European ancestry cases, 1,975 European ancestry controls	1,243 European ancestry cases, 4,779 European ancestry controls	6p21.32	HLA-DRA	rs3135394-G	0.11	5E-113		3.52	[3.02-4.10]	Illumina [648937]	N
614	chr6_cox_hap2	3878949	3878950	rs3135394	19838195	Gateva V	2009-11-01	Nat Genet	A large-scale replication study identifies TNIP1, PRDM1, JAZF1, UHRF1BP1 and IL10 as risk loci for systemic lupus erythematosus.	Systemic lupus erythematosus	1,310 European ancestry cases, 7,859 European ancestry controls	1,963 European ancestry cases, 4,329 European ancestry controls	6p21.32	HLA-DRB1	rs3135394-G	0.1	2E-60		1.98	[1.84-2.14]	Illumina [~ 2100000] (imputed)	N
614	chr6_cox_hap2	3878979	3878980	rs9268645	19430480	Barrett JC	2009-05-10	Nat Genet	Genome-wide association study and meta-analysis find that over 40 loci affect risk of type 1 diabetes.	Type 1 diabetes	7,514 European ancestry cases, 9,045 European ancestry controls	4,267 European ancestry cases, 4,670 European ancestry controls, 4,342 European ancestry trios from 2,319 families	6p21.32	MHC	rs9268645-?	NR	1E-100				Affymetrix, Illumina [841622] (imputed)	N
614	chr6_cox_hap2	3879359	3879360	rs3129879	34212547	An J	2021-07-01	Allergy Asthma Immunol Res	Genome-Wide Association Study of Korean Asthmatics: A Comparison With UK Asthmatics.	Adult asthma	1,386 Korean ancestry cases, 5,205 Korean ancestry controls	NA	6p21.32		rs3129879-A	0.34	3E-6		0.78	[0.71-0.87]	Affymetrix [4922160] (imputed)	N
614	chr6_cox_hap2	3879508	3879509	rs9268652	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Hepatitis B	1,425 European ancestry cases, 218,180 European ancestry controls	NA	6p21.32	HLA-DRA	rs9268652-G	0.74	3E-9		1.32	[1.25-1.38]	Illumina [at least 560000] (imputed)	N
614	chr6_cox_hap2	3879981	3879982	rs3129882	24511991	Hill-Burns EM	2014-02-10	BMC Genomics	Identification of a novel Parkinson's disease locus via stratified genome-wide association study.	Parkinson's disease	1,565 European ancestry sproadic Parkinson's disease cases, 435 European ancestry familial Parkinson's disease cases, 1,986 European ancestry controls	1,528 European ancestry sporadic Parkinson's disease cases, 707 European ancestry familial Parkinson's disease cases, 796 European ancestry controls	6p21.32	HLA	rs3129882-G	0.395	5E-10	(Sporadic)	1.38	[1.24-1.52]	Illumina [811597]	N
614	chr6_cox_hap2	3879981	3879982	rs3129882	24511991	Hill-Burns EM	2014-02-10	BMC Genomics	Identification of a novel Parkinson's disease locus via stratified genome-wide association study.	Parkinson's disease	1,565 European ancestry sproadic Parkinson's disease cases, 435 European ancestry familial Parkinson's disease cases, 1,986 European ancestry controls	1,528 European ancestry sporadic Parkinson's disease cases, 707 European ancestry familial Parkinson's disease cases, 796 European ancestry controls	6p21.32	HLA	rs3129882-G	0.395	3E-8		1.31	[1.19-1.43]	Illumina [811597]	N
614	chr6_cox_hap2	3879981	3879982	rs3129882	21779181	Gorlova O	2011-07-14	PLoS Genet	Identification of novel genetic markers associated with clinical phenotypes of systemic sclerosis through a genome-wide association strategy.	Systemic sclerosis	2,296 European ancestry cases, 5,172 European ancestry controls	3,175 European ancestry cases, 4,210 European ancestry controls	6p21.32	HLA-DRA	rs3129882-?	0.44	2E-27	(ATA positive)	2.17	[1.88-2.50]	Illumina [NR] (imputed)	N
614	chr6_cox_hap2	3879981	3879982	rs3129882	20711177	Hamza TH	2010-08-15	Nat Genet	Common genetic variation in the HLA region is associated with late-onset sporadic Parkinson's disease.	Parkinson's disease	2,000 European ancestry cases, 1,986 European ancestry controls	Up to 1,447 cases, 1,468 controls	6p21.32	HLA-DRA	rs3129882-G	0.40	2E-10		1.26	[1.17-1.35]	Illumina [811597]	N
614	chr6_cox_hap2	3880159	3880160	rs17496549	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs17496549-T	0.2	9E-9		4.33	[3.31-5.67]	Illumina [NR] (imputed)	N
614	chr6_cox_hap2	3881027	3881028	rs3129886	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Matrix metalloproteinase-10 levels	21,758 European ancestry individuals	9,173 individuals	6p21.32		rs3129886-T	0.25	6E-7		0.0572	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
614	chr6_cox_hap2	3881142	3881143	rs3129887	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DRA	rs3129887-A	NR	4E-11		0.0236955	[0.017-0.031] unit decrease	Affymetrix [319769] (imputed)	N
614	chr6_cox_hap2	3881142	3881143	rs3129887	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DRA	rs3129887-A	NR	2E-10		0.0226864	[0.016-0.03] unit decrease	Affymetrix [319769] (imputed)	N
614	chr6_cox_hap2	3881142	3881143	rs3129887	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DRA	rs3129887-A	NR	2E-12		0.0256	[0.019-0.033] unit decrease	Affymetrix [321169] (imputed)	N
614	chr6_cox_hap2	3881142	3881143	rs3129887	28062665	Kawashima M	2017-01-05	Hum Mol Genet	Genome-wide association studies identify PRKCB as a novel genetic susceptibility locus for primary biliary cholangitis in the Japanese population.	Primary biliary cholangitis	1,381 Japanese ancestry cases, 1,505 Japanese ancestry controls	512 Japanese ancestry cases, 6,512 Japanese ancestry controls	6p21.32	HLA-DRA, HLA-DRB1	rs3129887-?	NR	2E-29		3.13	[2.54-3.85]	Affymetrix [425290]	N
614	chr6_cox_hap2	3881392	3881393	rs9268659	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	HLA-DRA	rs9268659-T	NR	2E-9		0.0171616	[0.012-0.023] unit decrease	Affymetrix [321114] (imputed)	N
614	chr6_cox_hap2	3881392	3881393	rs9268659	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Perceived unattractiveness to mosquitoes	16,576 European ancestry individuals	NA	6p21.32	HLA-DRA	rs9268659-T	0.42	2E-9		0.139734	[0.094-0.186] unit increase	Illumina [7433384] (imputed)	N
614	chr6_cox_hap2	3881827	3881828	rs2239805	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.32	HLA-DRA, HLA-DRB9	rs2239805-G	0.169007	1E-12	(EA, Complement C4)	0.4079	[0.3-0.52] unit decrease	Affymetrix [509946]	N
614	chr6_cox_hap2	3882097	3882098	rs7192	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs7192-T	0.49	3E-9		0.15	[0.11-0.22]	Illumina [NR] (imputed)	N
614	chr6_cox_hap2	3882097	3882098	rs7192	22541561	Zhao H	2012-04-26	Am J Hum Genet	A genome-wide association study reveals that variants within the HLA region are associated with risk for nonobstructive azoospermia.	Non-obstructive azoospermia	802 Han Chinese ancestry cases, 1,863 Han Chinese ancestry controls	1,424 Han Chinese ancestry cases, 2,713 Han Chinese ancestry controls	6p21.32	HLA-DRA	rs7192-T	0.26	3E-6		1.29	[NR]	Affymetrix, Illumina [912924]	N
614	chr6_cox_hap2	3882297	3882298	rs2239802	28008999	Ostrowski J	2016-12-23	Sci Rep	Genetic architecture differences between pediatric and adult-onset inflammatory bowel diseases in the Polish population.	Ulcerative colitis	269 Polish ancestry child cases, 259 Polish ancestry adult cases, 582 Polish ancestry controls	121 Polish ancestry child cases, 85 Polish ancestry adult cases, 352 Polish ancestry controls	6p21.32	HLA-DRA	rs2239802-?		2E-7	(Adults)	1.7715251	[1.43-2.19]	Illumina [2612357]	N
614	chr6_cox_hap2	3882805	3882806	rs4935356	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	6p21.32	HLA-DRA	rs4935356-T	0.756088	8E-22		0.0245501	[0.02-0.03] unit decrease	Affymetrix [NR] (imputed)	N
614	chr6_cox_hap2	3882812	3882813	rs3135390	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DRA	rs3135390-C	NR	6E-9		0.0224213	[0.015-0.03] unit increase	Affymetrix [323123] (imputed)	N
614	chr6_cox_hap2	3882852	3882853	rs3177928	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs3177928-A	0.21	2E-8		4.13	[3.16-5.38]	Illumina [NR] (imputed)	N
614	chr6_cox_hap2	3882852	3882853	rs3177928	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.32	NR	rs3177928-G	NR	1E-9		0.033	unit decrease	Affymetrix [at least 7091467] (imputed)	N
614	chr6_cox_hap2	3882852	3882853	rs3177928	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.32	NR	rs3177928-G	0.856	5E-7	(EA)	0.03	unit decrease	Affymetrix [at least 7091467] (imputed)	N
614	chr6_cox_hap2	3882852	3882853	rs3177928	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.32	NR	rs3177928-G	NR	1E-15		0.049	unit decrease	Affymetrix [at least 7091467] (imputed)	N
614	chr6_cox_hap2	3882852	3882853	rs3177928	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.32	NR	rs3177928-G	0.856	5E-12	(EA)	0.045	unit decrease	Affymetrix [at least 7091467] (imputed)	N
614	chr6_cox_hap2	3882852	3882853	rs3177928	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.32	NR	rs3177928-G	NR	9E-10		0.038	unit decrease	Affymetrix [at least 7091467] (imputed)	N
614	chr6_cox_hap2	3882852	3882853	rs3177928	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.32	NR	rs3177928-G	0.856	2E-7	(EA)	0.035	unit decrease	Affymetrix [at least 7091467] (imputed)	N
614	chr6_cox_hap2	3882852	3882853	rs3177928	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Total cholesterol levels	32,576 East Asian ancestry individuals, 187,365 European ancestry individuals	10,855 Chinese ancestry individuals	6p21.32	HLA	rs3177928-A	0.181	5E-22	(Trans-ethnic initial)	0.0482	[0.038-0.058] unit increase (EA Beta values)	Affymetrix, Illumina [up to 1900000] (imputed)	N
614	chr6_cox_hap2	3882852	3882853	rs3177928	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	LDL cholesterol levels	32,285 East Asian ancestry individuals, 173,082 European ancestry individuals	8,478 Chinese ancestry individuals	6p21.32	HLA	rs3177928-A	0.181	5E-17	(Trans-ethnic initial)	0.0452	[0.035-0.055] unit increase (EA Beta value)	Affymetrix, Illumina [~ 1900000] (imputed)	N
614	chr6_cox_hap2	3882852	3882853	rs3177928	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	6p21.32	HLA	rs3177928-A	0.17	3E-17		0.045	[NR] unit increase	NR [NR] (imputed)	N
614	chr6_cox_hap2	3882852	3882853	rs3177928	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	6p21.32	HLA	rs3177928-A	0.17	1E-21		0.048	[NR] unit increase	NR [NR] (imputed)	N
614	chr6_cox_hap2	3882852	3882853	rs3177928	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	LDL cholesterol	95,454 European ancestry individuals	NA	6p21.32	HLA	rs3177928-A	0.16	2E-15		1.83	[1.36-2.3] mg/dL increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
614	chr6_cox_hap2	3882852	3882853	rs3177928	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	Cholesterol, total	100,184 European ancestry individuals	NA	6p21.32	HLA	rs3177928-A	0.16	4E-19		2.31	[1.78-2.84] mg/dL increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
614	chr6_cox_hap2	3882897	3882898	rs7194	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.32	HLA-DRA	rs7194-A	0.5927	6E-9		0.0221	[0.015-0.03] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
614	chr6_cox_hap2	3882897	3882898	rs7194	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6p21.32	BTNL2	rs7194-A	0.5927	5E-8		0.0247	[0.016-0.034] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
614	chr6_cox_hap2	3882897	3882898	rs7194	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.32	HLA-DRA	rs7194-?	0.5927	1E-7				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
614	chr6_cox_hap2	3882956	3882957	rs7195	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs7195-A	0.49	3E-9		0.15	[0.11-0.22]	Illumina [NR] (imputed)	N
614	chr6_cox_hap2	3883468	3883469	rs3135388	19525953	De Jager PL	2009-06-14	Nat Genet	Meta-analysis of genome scans and replication identify CD6, IRF8 and TNFRSF1A as new multiple sclerosis susceptibility loci.	Multiple sclerosis	2,624 European ancestry cases, 7,220 European ancestry controls	2,215 European ancestry cases, 2,116 European ancestry controls		HLA-DRB1	rs3135388-A	0.22	4E-225		2.75	[2.46-3.07]	Affymetrix, Illumina [~ 2560000] (imputed)	N
614	chr6_cox_hap2	3883468	3883469	rs3135388	17660530	Hafler DA	2007-07-29	N Engl J Med	Risk alleles for multiple sclerosis identified by a genomewide study.	Multiple sclerosis	931 European ancestry trios, 2,431 European ancestry controls	609 European ancestry trios, 2,322 European ancestry cases, 2,987 European ancestry controls		HLA-DRA	rs3135388-A	0.23	9E-81		1.99	[1.84-2.15]	Affymetrix [334923]	N
614	chr6_cox_hap2	3883511	3883512	rs2213586	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs2213586-A	0.49	3E-9		0.15	[0.11-0.22]	Illumina [NR] (imputed)	N
614	chr6_cox_hap2	3883567	3883568	rs2213585	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs2213585-G	0.48	3E-9		0.15	[0.11-0.22]	Illumina [NR] (imputed)	N
614	chr6_cox_hap2	3883876	3883877	rs2227139	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs2227139-G	0.49	3E-9		0.15	[0.11-0.22]	Illumina [NR] (imputed)	N
614	chr6_cox_hap2	3883876	3883877	rs2227139	19820697	Soranzo N	2009-10-11	Nat Genet	A genome-wide meta-analysis identifies 22 loci associated with eight hematological parameters in the HaemGen consortium.	Hematological parameters	4,627 European ancestry individuals	9,316 European ancestry individuals	6p21.32	intergenic	rs2227139-G	NR	1E-7	(WBC)	0.02	[0.01-0.03] 10^9/l increase	Affymetrix, Illumina [~ 2110000] (imputed)	N
614	chr6_cox_hap2	3883962	3883963	rs3129889	22190364	Patsopoulos NA	2011-12-01	Ann Neurol	Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.	Multiple sclerosis	5,545 European ancestry cases, 12,153 European ancestry controls	NA	6p21.32	HLA-DRB1	rs3129889-G	0.20	1E-206		2.97	[NR]	Affymetrix, Illumina [2529394]	N
614	chr6_cox_hap2	3883974	3883975	rs3763326	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (mother's age at death or mother's attained age)	up to 699,000 individuals	NA	6p21.32	NR	rs3763326-A		5E-6				Illumina [458525]	N
614	chr6_cox_hap2	3884247	3884248	rs3763327	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs3763327-G	0.49	3E-9		0.15	[0.11-0.22]	Illumina [NR] (imputed)	N
614	chr6_cox_hap2	3884695	3884696	rs3129890	26272072	Jiang X	2015-08-13	Rheumatology (Oxford)	An Immunochip-based interaction study of contrasting interaction effects with smoking in ACPA-positive versus ACPA-negative rheumatoid arthritis.	ACPA-positive rheumatoid arthritis (smoking interaction)	340 European ancestry never-smoker cases, 493 European ancestry ever-smoker cases, 746 European ancestry never-smoker controls, 994 European ancestry ever-smoker controls	187 European ancestry never-smoker cases, 421 European ancestry ever-smoker cases, 461 European ancestry never-smoker controls, 447 European ancestry ever-smoker controls	6p21.32	NR	rs3129890-?	NR	1E-10	(adjusted for HLA shared epitope)	2.5	[1.89-3.57]	Illumina [133648] (imputed)	N
614	chr6_cox_hap2	3884695	3884696	rs3129890	21804548	Hirota T	2011-07-31	Nat Genet	Genome-wide association study identifies three new susceptibility loci for adult asthma in the Japanese population.	Asthma	1,532 Japanese ancestry cases, 3,304 Japanese ancestry controls	5,639 Japanese ancestry cases, 24,608 Japanese ancestry controls	6p21.32	HLA-DRA	rs3129890-T	0.61	5E-13		1.15	[1.11-1.20]	Illumina [458847]	N
614	chr6_cox_hap2	3884709	3884710	rs9268670	33768542	Liu Y	2021-03-26	Clin Pharmacol Ther	Class II HLA Variants Associate with Risk of Pegaspargase Hypersensitivity.	Asparaginase hypersensitivity in acute lymphoblastic leukemia	310 African ancestry individuals, 798 Native American individuals, 387 individuals	NA	6p21.32	NR	rs9268670-T	NR	7E-7		0.56	[NR]	Illumina [NR] (imputed)	N
614	chr6_cox_hap2	3884709	3884710	rs9268670	33768542	Liu Y	2021-03-26	Clin Pharmacol Ther	Class II HLA Variants Associate with Risk of Pegaspargase Hypersensitivity.	Asparaginase hypersensitivity in acute lymphoblastic leukemia	310 African ancestry individuals, 798 Native American individuals, 112 Asian ancestry individuals, 387 individuals	NA	6p21.32	HLA-DRA	rs9268670-T	NR	2E-7		0.55		Illumina [NR] (imputed)	N
614	chr6_cox_hap2	3884712	3884713	rs9268671	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs9268671-A	0.339438	4E-8		0.023014	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
614	chr6_cox_hap2	3884712	3884713	rs9268671	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DRA	rs9268671-A	NR	4E-19		0.0265032	[0.021-0.032] unit decrease	Affymetrix [319769] (imputed)	N
614	chr6_cox_hap2	3884712	3884713	rs9268671	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DRA	rs9268671-A	NR	1E-12		0.0233694	[0.017-0.03] unit decrease	Affymetrix [323858] (imputed)	N
614	chr6_cox_hap2	3884712	3884713	rs9268671	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DRA	rs9268671-A	NR	5E-18		0.0256545	[0.02-0.031] unit decrease	Affymetrix [319769] (imputed)	N
614	chr6_cox_hap2	3884712	3884713	rs9268671	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	HLA-DRA	rs9268671-A	NR	4E-11		0.0217286	[0.015-0.028] unit decrease	Affymetrix [127266] (imputed)	N
614	chr6_cox_hap2	3884712	3884713	rs9268671	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DRA	rs9268671-A	NR	2E-11		0.0199636	[0.014-0.026] unit increase	Affymetrix [321016] (imputed)	N
614	chr6_cox_hap2	3884712	3884713	rs9268671	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DRA	rs9268671-A	NR	3E-22		0.0312717	[0.025-0.038] unit increase	Affymetrix [323123] (imputed)	N
614	chr6_cox_hap2	3884712	3884713	rs9268671	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	6p21.32	HLA-DRA	rs9268671-G	0.661005	1E-11		0.018096138	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
614	chr6_cox_hap2	3885087	3885088	rs9268677	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DRA	rs9268677-A	NR	4E-15		0.0222453	[0.017-0.028] unit increase	Affymetrix [319769] (imputed)	N
614	chr6_cox_hap2	3885087	3885088	rs9268677	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DRA	rs9268677-A	NR	1E-14		0.0218771	[0.016-0.027] unit increase	Affymetrix [319769] (imputed)	N
614	chr6_cox_hap2	3885498	3885499	rs3129891	26272072	Jiang X	2015-08-13	Rheumatology (Oxford)	An Immunochip-based interaction study of contrasting interaction effects with smoking in ACPA-positive versus ACPA-negative rheumatoid arthritis.	ACPA-positive rheumatoid arthritis (smoking interaction)	340 European ancestry never-smoker cases, 493 European ancestry ever-smoker cases, 746 European ancestry never-smoker controls, 994 European ancestry ever-smoker controls	187 European ancestry never-smoker cases, 421 European ancestry ever-smoker cases, 461 European ancestry never-smoker controls, 447 European ancestry ever-smoker controls	6p21.32	NR	rs3129891-?	NR	2E-9	(adjusted for HLA shared epitope)	2.5	[1.89-3.7]	Illumina [133648] (imputed)	N
614	chr6_cox_hap2	3885571	3885572	rs9469112	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	6p21.32	HLA-DRA	rs9469112-T	0.1734	1E-10		6.4424515	NR z-unit increase	Affymetrix, Illumina [up to 10847151] (imputed)	N
614	chr6_cox_hap2	3885629	3885630	rs28895028	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs28895028-A	0.21	2E-8		4.13	[3.16-5.38]	Illumina [NR] (imputed)	N
614	chr6_cox_hap2	3886274	3886275	rs12529093	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs12529093-G	0.21	2E-8		4.13	[3.16-5.38]	Illumina [NR] (imputed)	N
614	chr6_cox_hap2	3886391	3886392	rs13209234	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs13209234-A	0.21	2E-8		4.13	[3.16-5.38]	Illumina [NR] (imputed)	N
614	chr6_cox_hap2	3886493	3886494	rs13209059	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs13209059-G	0.21	2E-8		4.13	[3.16-5.38]	Illumina [NR] (imputed)	N
614	chr6_cox_hap2	3887643	3887644	rs28895057	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs28895057-G	0.098	1E-15	(Ubiquitin carboxyl-terminal hydrolase 25, USP25.9215.117.3)	0.39	[0.29-0.49] unit increase	Affymetrix [10572788] (imputed)	N
614	chr6_cox_hap2	3888191	3888192	rs6937167	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.32	NR	rs6937167-AT	0.01	3E-9	(women)	1.02959	[0.7-1.36] unit increase	Affymetrix [up to 8900000] (imputed)	N
614	chr6_cox_hap2	3888428	3888429	rs6937545	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DRA	rs6937545-A	NR	3E-16		0.0268745	[0.02-0.033] unit decrease	Affymetrix [323858] (imputed)	N
614	chr6_cox_hap2	3888428	3888429	rs6937545	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	HLA-DRA	rs6937545-A	NR	4E-14		0.0248417	[0.018-0.031] unit decrease	Affymetrix [127266] (imputed)	N
614	chr6_cox_hap2	3889673	3889673	rs202087577	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	6p21.32	Intergenic	rs202087577-?	NR	3E-21		0.0536425	[0.043-0.065] unit increase	Illumina [13520550] (imputed)	N
614	chr6_cox_hap2	3889861	3889862	rs28895103	33649182	Penova M	2021-03-01	Proc Natl Acad Sci U S A	Genome wide association study of HTLV-1-associated myelopathy/tropical spastic paraparesis in the Japanese population.	HTLV-1 associated myelopathy	731 Japanese ancestry cases, 846 Japanese ancestry controls	NA	6p21.32		rs28895103-G	0.95	1E-8		0.44	[0.33-0.58]	Illumina [126394]	N
614	chr6_cox_hap2	3890356	3890357	rs3135384	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	Systemic lupus erythematosus	1,639 East Asian ancestry cases, 2,410 East Asian ancestry controls	NA			rs3135384-G	NR	7E-26		0.5329	[0.43-0.63] unit decrease	Illumina [NR] (imputed)	N
614	chr6_cox_hap2	3890576	3890577	rs7754768	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs7754768-C	0.49	7E-10		0.14	[0.10-0.20]	Illumina [NR] (imputed)	N
614	chr6_cox_hap2	3890596	3890597	rs9268775	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	6p21.32	HLA-DRA	rs9268775-T	0.0541	3E-6		0.0884	[0.052-0.125] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
614	chr6_cox_hap2	3890894	3890895	rs9268781	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DRB9	rs9268781-T	NR	5E-17		0.0247953	[0.019-0.031] unit increase	Affymetrix [321016] (imputed)	N
614	chr6_cox_hap2	3891252	3891253	rs9268786	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	6p21.32		rs9268786-C	NR	3E-28		0.0241	[0.02-0.028] unit increase	Affymetrix, Illumina [20529698] (imputed)	N
614	chr6_cox_hap2	3891340	3891341	rs111255178	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.32	HLA-DRB9	rs111255178-T	0.1435	3E-6		0.0558	[0.032-0.079] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
614	chr6_cox_hap2	3891470	3891471	rs9268791	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD25 on CD28+ CD4+ T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9268791-C	0.74777	1E-10		0.2077	[0.14-0.27] unit decrease	Illumina [17954496] (imputed)	N
614	chr6_cox_hap2	3891866	3891867	rs3129897	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	HLA-DRB9	rs3129897-A	0.156	2E-29	(Interleukin-21, IL21.7124.18.3)	0.37	[0.31-0.43] unit decrease	Affymetrix [10572788] (imputed)	N
614	chr6_cox_hap2	3891901	3891902	rs28895136	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs28895136-C	0.21	2E-8		4.13	[3.16-5.38]	Illumina [NR] (imputed)	N
614	chr6_cox_hap2	3892588	3892589	rs2097442	34642315	Ferreiro-Iglesias A	2021-10-12	Nat Commun	Germline determinants of humoral immune response to HPV-16 protect against oropharyngeal cancer.	Oropharynx cancer and human papilloma virus 16 negative oropharyngeal cancer	2,359 European ancestry cases, 565 European ancestry controls	NA	6p21.32		rs2097442-A	NR	1E-6		1.2355		Illumina [up to 7574753] (imputed)	N
614	chr6_cox_hap2	3892588	3892589	rs2097442	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Non-Hodgkin's lymphoma	2,400 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs2097442-A	NR	3E-19		1.3187393	NR	Affymetrix [7846216] (imputed)	N
614	chr6_cox_hap2	3894323	3894324	rs9268807	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	HLA	rs9268807-C	0.208	5E-117		1.604	[1.56-1.65]	Illumina [11270530] (imputed)	N
614	chr6_cox_hap2	3894439	3894440	rs13220657	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs13220657-T	0.21	2E-8		4.13	[3.16-5.38]	Illumina [NR] (imputed)	N
614	chr6_cox_hap2	3894778	3894779	rs9268811	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DRB9	rs9268811-T	NR	1E-14		0.0222291	[0.017-0.028] unit increase	Affymetrix [321169] (imputed)	N
614	chr6_cox_hap2	3895002	3895003	rs9268813	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	6p21.32	NR	rs9268813-?	NR	8E-14				Affymetrix [~ 8270000] (imputed)	N
614	chr6_cox_hap2	3895002	3895003	rs9268813	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.32	NR	rs9268813-?	NR	8E-15				Affymetrix [~ 8270000] (imputed)	N
614	chr6_cox_hap2	3895002	3895003	rs9268813	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs9268813-?	NR	1E-17				Affymetrix [~ 8270000] (imputed)	N
614	chr6_cox_hap2	3895290	3895291	rs7763262	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	6p21.32	HLA-DQB1, HLA-DQA1, HLA-DRB1	rs7763262-C	0.72	1E-10	(East Asian)	1.3	[NR]	Illumina [> 1000000] (imputed)	N
614	chr6_cox_hap2	3895290	3895291	rs7763262	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	6p21.32	HLA-DQB1, HLA-DQA1, HLA-DRB1	rs7763262-C	0.69	2E-38		1.41	[NR]	Illumina [> 1000000] (imputed)	N
614	chr6_cox_hap2	3895290	3895291	rs7763262	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	6p21.32	HLA-DQB1, HLA-DQA1, HLA-DRB1	rs7763262-C	0.69	1E-30	(EA)	1.49	[NR]	Illumina [> 1000000] (imputed)	N
614	chr6_cox_hap2	3895712	3895713	rs28895205	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs28895205-G	0.21	2E-8		4.13	[3.16-5.38]	Illumina [NR] (imputed)	N
614	chr6_cox_hap2	3896170	3896171	rs41291794	27927641	Ombrello MJ	2016-12-07	Ann Rheum Dis	Genetic architecture distinguishes systemic juvenile idiopathic arthritis from other forms of juvenile idiopathic arthritis: clinical and therapeutic implications.	Systemic juvenile idiopathic arthritis	178 European ancestry cases, 434 European ancestry controls, 81 Hispanic/Latin American cases, 177 Hispanic/Latin American controls, 511 cases, 6,336 controls	NA	6p21.32	HLA-DRA	rs41291794-?		4E-15	(Additive)	2.1	[1.80-2.60]	Illumina [5600610] (imputed)	N
614	chr6_cox_hap2	3896391	3896392	rs6457592	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DRB9	rs6457592-C	NR	2E-10		0.0179035	[0.012-0.023] unit decrease	Affymetrix [321016] (imputed)	N
614	chr6_cox_hap2	3897413	3897414	rs113164910	27668658	Iotchkova V	2016-11-01	Nat Genet	Discovery and refinement of genetic loci associated with cardiometabolic risk using dense imputation maps.	Cardiometabolic and hematological traits	up to 35,981 European ancestry individuals	up to 102,505 European ancestry individuals	6p21.32	HLA-DRA	rs113164910-AAC		4E-54	(WBC)	0.008	[0.008-0.008] unit increase	Affymetrix, Illumina [17000000] (imputed)	N
614	chr6_cox_hap2	3897414	3897414	rs5875374	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	6p21.32	HLA-DRB9	rs5875374-AAC	0.6671	2E-39		0.04909979	[0.042-0.056] unit increase	Affymetrix [~ 2500000] (imputed)	N
614	chr6_cox_hap2	3897507	3897508	rs1547422	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD45 on CD4+ T cell	3,113 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs1547422-G	0.77074	1E-9		0.204	[0.14-0.27] unit decrease	Illumina [18030777] (imputed)	N
614	chr6_cox_hap2	3897587	3897588	rs1548306	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycoprotein acetyls levels	115,082 European ancestry individuals	NA	6p21.32		rs1548306-A	0.337505	3E-30		0.0494261	[0.041-0.058] unit decrease	NR [11722792] (imputed)	N
614	chr6_cox_hap2	3897587	3897588	rs1548306	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA	6p21.32	NR	rs1548306-?	NR	9E-7		0.0374	[0.023-0.052] unit increase	Illumina [at least 560000] (imputed)	N
614	chr6_cox_hap2	3897587	3897588	rs1548306	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	6p21.32	Intergenic	rs1548306-T	NR	6E-10		0.0234279	[0.016-0.031] unit decrease	Illumina [13519193] (imputed)	N
614	chr6_cox_hap2	3897587	3897588	rs1548306	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.32	Intergenic	rs1548306-T	NR	1E-11	(women)	0.0332253	[0.024-0.043] unit decrease	Illumina [13520550] (imputed)	N
614	chr6_cox_hap2	3897587	3897588	rs1548306	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.32	HLA-DRA, HLA-DRB5	rs1548306-T	0.634	9E-14		0.0256004	[0.019-0.032] unit decrease	Illumina [13520550] (imputed)	N
614	chr6_cox_hap2	3897587	3897588	rs1548306	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	6p21.32	HLA-DRA, HLA-DRB5	rs1548306-T	0.634	5E-29		0.0446701	[0.037-0.052] unit decrease	Illumina [13520550] (imputed)	N
614	chr6_cox_hap2	3897789	3897790	rs28732229	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs28732229-T	0.21	2E-8		4.13	[3.16-5.38]	Illumina [NR] (imputed)	N
614	chr6_cox_hap2	3898156	3898157	rs9268831	33558538	Gebresilase T	2021-02-08	Sci Rep	Replication of HLA class II locus association with susceptibility to podoconiosis in three Ethiopian ethnic groups.	Podoconiosis	1,137 Ethiopian ancestry cases, 1,152 Ethiopian ancestry controls	NA	6p21.32	HLA-DRB9	rs9268831-T	0.46	2E-9				Illumina [2201695]	N
614	chr6_cox_hap2	3898156	3898157	rs9268831	29534301	Nishida N	2018-03-13	Hepatology	Key HLA-DRB1-DQB1 haplotypes and role of the BTNL2 gene for response to a hepatitis B vaccine.	Response to hepatitis B vaccine	107 Japanese ancestry low responder individuals, 351 Japanese ancestry intermediate responder individuals, 735 Japanese ancestry high responder individuals	NA	6p21.32	HLA-DRAB5	rs9268831-?		1E-13		0.192	unit decrease	Affymetrix [427664]	N
614	chr6_cox_hap2	3898197	3898198	rs9268832	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs9268832-T	0.49	7E-10		0.14	[0.10-0.20]	Illumina [NR] (imputed)	N
614	chr6_cox_hap2	3898523	3898524	rs9268835	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DRB9	rs9268835-A	NR	4E-20		0.0276383	[0.022-0.034] unit increase	Affymetrix [319769] (imputed)	N
614	chr6_cox_hap2	3898523	3898524	rs9268835	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DRB9	rs9268835-A	NR	4E-20		0.0276817	[0.022-0.034] unit increase	Affymetrix [319769] (imputed)	N
614	chr6_cox_hap2	3898523	3898524	rs9268835	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	HLA-DRB9	rs9268835-A	NR	7E-13		0.0218474	[0.016-0.028] unit increase	Affymetrix [321114] (imputed)	N
614	chr6_cox_hap2	3898693	3898694	rs6903608	24920014	Cozen W	2014-06-12	Nat Commun	A meta-analysis of Hodgkin lymphoma reveals 19p13.3 TCF3 as a novel susceptibility locus.	Hodgkin's lymphoma	1,816 European ancestry cases, 7,877 European ancestry controls	1,281 European ancestry cases, 3,218 European ancestry controls	6p21.32	HLA class II, HLA class I	rs6903608-C	0.30	7E-31		1.64	[1.51-1.78]	Affymetrix, Illumina [1004829] (imputed)	N
614	chr6_cox_hap2	3898693	3898694	rs6903608	24149102	Frampton M	2013-10-22	Nat Commun	Variation at 3p24.1 and 6q23.3 influences the risk of Hodgkin's lymphoma.	Hodgkin's lymphoma	1,465 European ancestry cases, 6,417 European ancestry controls	1,071 European ancestry cases, 953 cases, 1,853 controls	6p21.32	NR	rs6903608-G	0.27	5E-27		1.62	[NR]	Illumina [296129]	N
614	chr6_cox_hap2	3898693	3898694	rs6903608	21037568	Enciso-Mora V	2010-10-31	Nat Genet	A genome-wide association study of Hodgkin's lymphoma identifies new susceptibility loci at 2p16.1 (REL), 8q24.21 and 10p14 (GATA3).	Hodgkin's lymphoma	589 European ancestry cases, 5,199 European ancestry controls	2,057 European ancestry cases, 3,416 European ancestry controls	6p21.32	HLA-DRA	rs6903608-G	0.27	3E-50		1.7	[1.58-1.82]	Illumina [504374]	N
614	chr6_cox_hap2	3899180	3899181	rs9268839	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	6p21.32	HLA-DRB1	rs9268839-A	NR	1E-100		0.737171	[0.52-0.95] unit decrease	Illumina [8380626] (imputed)	N
614	chr6_cox_hap2	3899180	3899181	rs9268839	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	6p21.32	HLA-DRB1	rs9268839-A	0.750718391	3E-7	(AA)	0.623752	[0.39-0.86] unit decrease	Illumina [8380626] (imputed)	N
614	chr6_cox_hap2	3899180	3899181	rs9268839	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	6p21.32	HLA-DRB1	rs9268839-A	0.56	4E-134	(East Asian)	0.64731	[0.6-0.7] unit decrease	Illumina [8380626] (imputed)	N
614	chr6_cox_hap2	3899180	3899181	rs9268839	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	6p21.32	HLA-DRB1	rs9268839-A	0.55	1E-250	(EA)	0.90412	[0.87-0.94] unit decrease	Illumina [8380626] (imputed)	N
614	chr6_cox_hap2	3899180	3899181	rs9268839	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	6p21.32	HLA-DRB1	rs9268839-G	0.45	1E-250	(EA)	2.47	[2.39-2.55]	Affymetrix, Illumina [up to 9739303] (imputed)	N
614	chr6_cox_hap2	3899180	3899181	rs9268839	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	6p21.32	HLA-DRB1	rs9268839-G	0.45	1E-250		2.28	[2.22-2.34]	Affymetrix, Illumina [up to 9739303] (imputed)	N
614	chr6_cox_hap2	3899180	3899181	rs9268839	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	6p21.32	HLA-DRB1	rs9268839-G	0.44	2E-145	(East Asian)	1.9	[1.81-1.99]	Affymetrix, Illumina [up to 9739303] (imputed)	N
614	chr6_cox_hap2	3899613	3899614	rs9268845	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	HLA-DRB9	rs9268845-T	NR	1E-11		0.0248689	[0.018-0.032] unit decrease	Affymetrix [127266] (imputed)	N
614	chr6_cox_hap2	3899654	3899655	rs9268846	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DRB9	rs9268846-G	NR	5E-10		0.0201434	[0.014-0.026] unit increase	Affymetrix [323858] (imputed)	N
614	chr6_cox_hap2	3899654	3899655	rs9268846	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	HLA-DRB9	rs9268846-G	NR	2E-9		0.019558	[0.013-0.026] unit increase	Affymetrix [127266] (imputed)	N
614	chr6_cox_hap2	3899712	3899713	rs9268848	32890573	Yan Q	2020-09-02	J Allergy Clin Immunol	A genome-wide association study of asthma hospitalizations in adults.	Exacerbations requiring hospitalisation in asthma	1,658 British ancestry cases, 32,509 British ancestry controls	NA	6p21.32	NR	rs9268848-G	0.42	2E-6		0.84	[NR]	Affymetrix [87696888] (imputed)	N
614	chr6_cox_hap2	3899712	3899713	rs9268848	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	6p21.32	HLA-DRB9	rs9268848-A	0.551419	2E-25		0.025138251	[0.02-0.03] unit increase	Affymetrix [93095623] (imputed)	N
614	chr6_cox_hap2	3899712	3899713	rs9268848	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	6p21.32	NR	rs9268848-?	NR	3E-20				Affymetrix [~ 8270000] (imputed)	N
614	chr6_cox_hap2	3899712	3899713	rs9268848	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	6p21.32	HLA-DRA	rs9268848-A	0.6148	6E-9	(East Asian)	0.0347	[0.023-0.046] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
614	chr6_cox_hap2	3899991	3899992	rs9268851	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein H6PD	5,364 Icelandic ancestry individuals	NA	6p21.32		rs9268851-A	0.2209	1E-96		0.45447	[0.41-0.5] unit increase	Illumina [7506463] (imputed)	N
614	chr6_cox_hap2	3900052	3900053	rs9268853	30552108	Kawabata Y	2018-12-14	Diabetes	A genome-Wide Association Study Confirming a Strong Effect of HLA and Identifying Variants in CSAD/lnc-ITGB7-1 on Chromosome 12q13.13 Associated with Susceptibility to Fulminant Type 1 Diabetes.	Fulminant type 1 diabetes	257 Japanese ancestry cases, 419 Japanese ancestry controls	NA	6p21.32	HLA	rs9268853-?	NR	2E-23		3.18	[2.53-4.01]	Affymetrix [426851] (imputed)	N
614	chr6_cox_hap2	3900052	3900053	rs9268853	23511034	Yang SK	2013-04-01	Inflamm Bowel Dis	Genome-wide association study of ulcerative colitis in Koreans suggests extensive overlapping of genetic susceptibility with Caucasians.	Ulcerative colitis	388 Korean ancestry cases, 739 Korean ancestry controls	417 Korean ancestry cases, 732 Korean ancestry controls	6p21.32	MHC	rs9268853-T	0.64	3E-6		1.37	[1.20-1.56]	Illumina [581060]	N
614	chr6_cox_hap2	3900052	3900053	rs9268853	23349640	Vijai J	2013-01-17	PLoS Genet	Susceptibility loci associated with specific and shared subtypes of lymphoid malignancies.	Lymphoma	275 Follicular non-Hodgkin's Lymphoma cases, 269 diffuse large B-cell non-Hodgkin's Lymphoma cases, 198 other non-Hodgkin's Lymphoma cases, 202 Hodgkin's Lymphoma cases, 4,044 controls	202 European ancestry Follicular non-Hodgkin's Lymphoma cases, 367 European ancestry diffuse large B-cell non-Hodgkin's Lymphoma cases, 577 European ancestry other non-Hodgkin's Lymphoma cases, 99 European ancestry Hodgkin's Lymphoma cases, 2,596 European ancestry controls	6p21.32	BTLN2, HLA-DRA, HLA-DRB5, HLA-DRB1	rs9268853-C	NR	2E-10	(FL)	1.56	[NR]	Affymetrix [530583]	N
614	chr6_cox_hap2	3900052	3900053	rs9268853	21297633	Anderson CA	2011-02-06	Nat Genet	Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47.	Ulcerative colitis	6,687 European ancestry cases, 19,718 European ancestry controls	9,628 European ancestry cases, 12,917 European ancestry controls	6p21.32	HLA-DRA, HLA-DRB5, BTNL2, HLA-DRB1, HLA-DQA1	rs9268853-T	0.66	1E-55		1.4	[1.34-1.47]	Affymetrix, Illumina [~ 1100000] (imputed)	N
614	chr6_cox_hap2	3900128	3900129	rs9268856	24943344	Ferrari R	2014-07-01	Lancet Neurol	Frontotemporal dementia and its subtypes: a genome-wide association study.	Frontotemporal dementia	1,377 European ancestry behavioural variant cases, 308 European ancestry Semantic dementia cases, 269 European ancestry Progressive nonfluent aphasia cases, 200 European ancestry Frontotremporal dementia with motor neuron disease cases, up to 4,308 European ancestry controls	690 European ancestry behavioural variant cases, 190 European ancestry Semantic dementia cases, 221 European ancestry Progressive nonfluent aphasia cases, 94 European ancestry Frontotremporal dementia with motor neuron disease cases, 177 European ancestry Frontotemporal lobar degeneration cases, up to 5,094 European ancestry controls	6p21.32	HLA-DRA, HLA-DRB5, BTNL2	rs9268856-C	0.748	6E-9	(All Frontotemporal dementia)	1.24	[1.16-1.32]	Illumina [6026385] (imputed)	N
614	chr6_cox_hap2	3901550	3901551	rs9268877	29905830	Lee HS	2018-08-01	J Crohns Colitis	An Intergenic Variant rs9268877 Between HLA-DRA and HLA-DRB Contributes to the Clinical Course and Long-term Outcome of Ulcerative Colitis.	Poor prognosis in Crohn's disease	243 Korean ancestry poor prognosis cases, 364 Korean ancestry good prognosis controls	145 Korean ancestry poor prognosis cases, 129 Korean ancestry good prognosis controls	6p21.32	NA	rs9268877-A	0.35	1E-8		1.72	[1.43-2.07]	Illumina [up to 519662]	N
614	chr6_cox_hap2	3901550	3901551	rs9268877	19915572	Barrett JC	2009-11-15	Nat Genet	Genome-wide association study of ulcerative colitis identifies three new susceptibility loci, including the HNF4A region.	Ulcerative colitis	2,361 European ancestry cases, 5,417 European ancestry controls	2,321 European ancestry cases, 4,818 European ancestry controls	6p21.32	MHC	rs9268877-?	NR	4E-23				Affymetrix [NR]	N
614	chr6_cox_hap2	3901550	3901551	rs9268877	18836448	Franke A	2008-10-05	Nat Genet	Sequence variants in IL10, ARPC2 and multiple other loci contribute to ulcerative colitis susceptibility.	Ulcerative colitis	1,167 European ancestry cases, 777 European ancestry controls	1,855 European ancestry cases, 3,091 European ancestry controls	6p21.32	HLA-DRA, BTNL2	rs9268877-T	0.45	6E-18		1.45	[1.33-1.58]	Affymetrix [355262]	N
614	chr6_cox_hap2	3902371	3902372	rs9268896	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs9268896-A	0.232	3E-20	(Complement C4, C4A.C4B.4481.34.2)	0.28	[0.22-0.34] unit decrease	Affymetrix [10572788] (imputed)	N
614	chr6_cox_hap2	3902483	3902484	rs9268905	28041642	Carmona FD	2016-12-29	Am J Hum Genet	A Genome-wide Association Study Identifies Risk Alleles in Plasminogen and P4HA2 Associated with Giant Cell Arteritis.	Giant cell arteritis	2,134 European ancestry cases, 9,125 European ancestry controls	NA	6p21.32	HLA-DRA, HLA-DRB1	rs9268905-?	0.37	2E-54		1.79	[1.67-1.93]	Illumina [1844133] (imputed)	N
614	chr6_cox_hap2	3902483	3902484	rs9268905	21602797	Wright FA	2011-05-22	Nat Genet	Genome-wide association and linkage identify modifier loci of lung disease severity in cystic fibrosis at 11p13 and 20q13.2.	Cystic fibrosis severity	2,317 European ancestry cases, 177 cases	898 European ancestry sibling pair cases, 75 sibling pair cases	6p21.32	HLA-DRA	rs9268905-C	0.32	1E-7				Illumina [~ 2609000] (imputed)	N
614	chr6_cox_hap2	3902917	3902918	rs78218185	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Asthma	13,015 East Asian ancestry cases, 162,933 East Asian ancestry controls	NA	6p21.32		rs78218185-A	0.135952394	4E-43		0.27918372	[0.24-0.32] unit increase	Illumina [13429513] (imputed)	N
614	chr6_cox_hap2	3903256	3903257	rs9268923	26819262	Zhou Y	2016-01-27	Mult Scler	Genetic loci for Epstein-Barr virus nuclear antigen-1 are associated with risk of multiple sclerosis.	Epstein Barr virus nuclear antigen 1 IgG levels	1,243 parents and up to 2,356 children from 992 families, 1,956 Mexican American individuals		6p21.32	HLA-DRB5, HLA-DQA1, HLA-DRA, HLA-DRB1	rs9268923-C	0.552	1E-11	(non-Mexican American parents and children)	0.18	unit increase	Illumina [up to 2428201] (imputed)	N
614	chr6_cox_hap2	3903256	3903257	rs9268923	26819262	Zhou Y	2016-01-27	Mult Scler	Genetic loci for Epstein-Barr virus nuclear antigen-1 are associated with risk of multiple sclerosis.	Epstein Barr virus nuclear antigen 1 IgG levels	1,243 parents and up to 2,356 children from 992 families, 1,956 Mexican American individuals		6p21.32	HLA-DRA, HLA-DRB5, HLA-DQA1, HLA-DRB1	rs9268923-C	0.552	1E-13	(non-Mexican American parents)	0.252	unit increase	Illumina [up to 2428201] (imputed)	N
614	chr6_cox_hap2	3903256	3903257	rs9268923	26819262	Zhou Y	2016-01-27	Mult Scler	Genetic loci for Epstein-Barr virus nuclear antigen-1 are associated with risk of multiple sclerosis.	Epstein Barr virus nuclear antigen 1 IgG levels	1,243 parents and up to 2,356 children from 992 families, 1,956 Mexican American individuals		6p21.32	HLA-DRA, HLA-DRB5, HLA-DQA1, HLA-DRB1	rs9268923-C	0.552	1E-11	(non-Mexican American sero-positive children)	0.225	unit increase	Illumina [up to 2428201] (imputed)	N
614	chr6_cox_hap2	3903256	3903257	rs9268923	20228798	Franke A	2010-03-14	Nat Genet	Genome-wide association study for ulcerative colitis identifies risk loci at 7q22 and 22q13 (IL17REL).	Ulcerative colitis	1,043 European ancestry cases, 1,703 European ancestry controls	2,539 European ancestry cases, 5,428 European ancestry controls	6p21.32	HLA-DRA	rs9268923-C	0.67	4E-15		1.45	[1.33-1.59]	Affymetrix [1897764] (imputed)	N
614	chr6_cox_hap2	3903390	3903391	rs9268925	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	6p21.32	Intergenic	rs9268925-C	NR	1E-23		0.0788801	[0.063-0.094] unit increase	Illumina [13520550] (imputed)	N
614	chr6_cox_hap2	3903478	3903479	rs9469120	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Yeast infection	52,218 European ancestry cases, 10,235 European ancestry controls	NA	6p21.32	NR	rs9469120-?	NR	9E-8		0.0846	[0.054-0.116] unit decrease	Illumina [at least 560000] (imputed)	N
614	chr6_cox_hap2	3903546	3903547	rs113585425	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs113585425-C	0.19	4E-8		4.04	[3.10-5.28]	Illumina [NR] (imputed)	N
614	chr6_cox_hap2	3903588	3903589	rs2395185	25186300	Terao C	2014-09-03	Arthritis Rheumatol	Association between antinuclear antibodies and the HLA class II locus and heterogeneous characteristics of staining patterns: the Nagahama study.	Antinuclear antibody levels	3,185 Japanese ancestry individuals	3,963 Japanese ancestry individuals	6p21.32	HLA-DRA, HLA-DRB5	rs2395185-?	NR	1E-11		0.25	unit increase	Illumina [303506]	N
614	chr6_cox_hap2	3903588	3903589	rs2395185	23143601	Lan Q	2012-11-11	Nat Genet	Genome-wide association analysis identifies new lung cancer susceptibility loci in never-smoking women in Asia.	Lung cancer	5,510 East Asian ancestry cases, 4,544 East Asian ancestry controls	1,099 East Asian ancestry cases, 2,913 East Asian ancestry controls	6p21.32	HLA class II	rs2395185-T	0.35	1E-8		1.17	[1.11-1.23]	Illumina [596032]	N
614	chr6_cox_hap2	3903588	3903589	rs2395185	22286212	Urayama KY	2012-01-27	J Natl Cancer Inst	Genome-wide association study of classical Hodgkin lymphoma and Epstein-Barr virus status-defined subgroups.	Hodgkin's lymphoma	1,200 European ancestry cases, 6,417 European ancestry controls	563 European ancestry cases, 613 European ancestry controls	6p21.32	HLA-DRA	rs2395185-?	NR	4E-31	(Total cHL)	1.82	[1.67-2.00]	Illumina [502514]	N
614	chr6_cox_hap2	3903588	3903589	rs2395185	20228799	McGovern DP	2010-03-14	Nat Genet	Genome-wide association identifies multiple ulcerative colitis susceptibility loci.	Ulcerative colitis	2,693 European ancestry cases, 6,791 European ancestry controls	2,009 European ancestry cases, 1,580 European ancestry controls	6p21.32	C6orf10, BTNL2, HLA	rs2395185-G	NR	9E-23		1.49	[NR]	Illumina [266047]	N
614	chr6_cox_hap2	3903588	3903589	rs2395185	19915573	Asano K	2009-11-15	Nat Genet	A genome-wide association study identifies three new susceptibility loci for ulcerative colitis in the Japanese population.	Ulcerative colitis	376 Japanese ancestry cases, 934 Japanese ancestry controls	376 Japanese ancestry cases, 1,097 Japanese ancestry controls	6p21.32	intergenic	rs2395185-G	0.61	5E-22		1.92	[1.68-2.19]	Illumina [513923]	N
614	chr6_cox_hap2	3903588	3903589	rs2395185	19122664	Silverberg MS	2009-01-04	Nat Genet	Ulcerative colitis-risk loci on chromosomes 1p36 and 12q15 found by genome-wide association study.	Ulcerative colitis	1,022 European ancestry cases, 2,503 European ancestry controls	1,387 European ancestry cases, 1,115 European ancestry controls	6p21.32	HLA-DQB1, HLA-DRA, BTNL2, HLA-DRB5, HLA-DRB1, HLA-DQA1	rs2395185-?	0.67	1E-16		1.52		Illumina [280748]	N
614	chr6_cox_hap2	3903697	3903698	rs2894257	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p21.32	HLA-DRADQA2	rs2894257-C	0.53	8E-36		1.36	[1.33-1.39]	Illumina [at least 560000] (imputed)	N
614	chr6_cox_hap2	3903739	3903740	rs2395190	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic sinusitis	4,617 East Asian ancestry cases, 152,226 East Asian ancestry controls	NA	6p21.32		rs2395190-T	0.301110024	1E-29		0.26669198	[0.22-0.31] unit decrease	Illumina [13426486] (imputed)	N
614	chr6_cox_hap2	3904167	3904168	rs9268948	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DRB9	rs9268948-G	NR	2E-9		0.0189254	[0.013-0.025] unit decrease	Affymetrix [319769] (imputed)	N
614	chr6_cox_hap2	3904167	3904168	rs9268948	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DRB9	rs9268948-G	NR	2E-9		0.0190762	[0.013-0.025] unit decrease	Affymetrix [319769] (imputed)	N
614	chr6_cox_hap2	3904180	3904181	rs35880697	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6p21.32	NR	rs35880697-?	NR	7E-10				Affymetrix [~ 8270000] (imputed)	N
614	chr6_cox_hap2	3905762	3905763	rs4947340	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	6p21.32	HLA-DRB9	rs4947340-T	0.40103	1E-52		0.0369333	[0.032-0.042] unit decrease	Affymetrix [93095623] (imputed)	N
614	chr6_cox_hap2	3905972	3905973	rs9268989	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs9268989-A	0.378	6E-14		0.856	[0.81-0.9]	Illumina [11270530] (imputed)	N
614	chr6_cox_hap2	3906663	3906664	rs9391782	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	6p21.32		rs9391782-C	0.36641	1E-6		0.033747	[0.02-0.047] unit increase	Affymetrix [15580782] (imputed)	N
614	chr6_cox_hap2	3908041	3908042	rs9405038	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	High density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	6p21.32	HLA-DRA, HLA-DRB5	rs9405038-?		1E-13		0.0366	[0.027-0.046] unit decrease	Illumina [31500000] (imputed)	N
614	chr6_cox_hap2	3908670	3908671	rs9269041	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on Dendritic Cell	2,871 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9269041-A	0.60762	1E-9		0.2062	[0.14-0.27] unit decrease	Illumina [17926566] (imputed)	N
614	chr6_cox_hap2	3910748	3910750	rs145954018	30674883	Jin Y	2019-01-23	Nat Commun	Early-onset autoimmune vitiligo associated with an enhancer variant haplotype that upregulates class II HLA expression.	Vitiligo (early onset)	704 European ancestry cases, 9,031 European ancestry controls	375 European ancestry cases, 1,455 European ancestry controls	6p21.32	NR	rs145954018-?	NR	3E-54		4.62	[4.42-4.82]	NR [up to 494043] (imputed)	N
614	chr6_cox_hap2	3911170	3911171	rs9357149	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.32		rs9357149-C	0.982	4E-24				Affymetrix [10369434] (imputed)	N
614	chr6_cox_hap2	3911396	3911397	rs9269080	30578877	Dahlin A	2018-12-19	J Allergy Clin Immunol	Large-scale, multi-ethnic genome-wide association study identifies novel loci contributing to asthma susceptibility in adults.	Adult asthma	16,274 European ancestry cases, 38,269 European ancestry controls	10,365 European ancestry cases, 16,110 European ancestry controls, cases and controls (see Moffatt et al 2010)	6p21.32	HLA-DRB9	rs9269080-?	NR	1E-8		1.098901	[1.05-1.11]	Affymetrix [7230512] (imputed)	N
614	chr6_cox_hap2	3911527	3911528	rs9269081	29196614	Sud A	2017-12-01	Nat Commun	Genome-wide association study of classical Hodgkin lymphoma identifies key regulators of disease susceptibility.	Nodular sclerosis Hodgkin lymphoma	1,278 European ancestry cases, 14,325 European ancestry controls	1,586 cases, 3,069 controls	6p21.32	HLA-DRA	rs9269081-?	NR	2E-39		1.82	[1.67-2.00]	Illumina [> 10000000] (imputed)	N
614	chr6_cox_hap2	3912125	3912126	rs2071805	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Osteoporosis	8,520 European ancestry cases, 479,981 European ancestry controls, 9,794 East Asian ancestry cases, 168,932 East Asian ancestry controls	NA	6p21.32		rs2071805-T	NR	9E-10		0.144	[0.098-0.19] unit decrease	Affymetrix, Illumina [25844994] (imputed)	N
614	chr6_cox_hap2	3912548	3912549	rs34452045	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs34452045-G	0.145	3E-31		0.694	[0.63-0.75]	Illumina [11270530] (imputed)	N
614	chr6_cox_hap2	3913644	3913645	rs9269108	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p21.32	NR	rs9269108-?	NR	3E-6		4.641	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
614	chr6_cox_hap2	3913687	3913688	rs9269109	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8+ Natural Killer T Absolute Count	3,652 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9269109-C	0.36376	3E-8		0.1671	[0.11-0.23] unit increase	Illumina [18427348] (imputed)	N
614	chr6_cox_hap2	3913687	3913688	rs9269109	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28- CD25++ CD8+ T cell Absolute Count	3,130 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9269109-C	0.35879	1E-8		0.1597	[0.11-0.21] unit increase	Illumina [18189521] (imputed)	N
614	chr6_cox_hap2	3914219	3914220	rs28895243	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	6p21.32	HLA-DRB9	rs28895243-G	0.039859	5E-20		0.05294043	[0.042-0.064] unit decrease	Affymetrix [93095623] (imputed)	N
614	chr6_cox_hap2	3914484	3914485	rs116353692	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (adrenergics, inhalants)	5,880 East Asian ancestry cases, 172,846 East Asian ancestry controls	NA	6p21.32		rs116353692-C	0.139167381	2E-13		0.21394032	[0.16-0.27] unit increase	Illumina [13429980] (imputed)	N
614	chr6_cox_hap2	3914614	3914615	rs12194148	21156761	Padyukov L	2010-12-14	Ann Rheum Dis	A genome-wide association study suggests contrasting associations in ACPA-positive versus ACPA-negative rheumatoid arthritis.	Rheumatoid arthritis	1,147 European ancestry ACPA positive RA cases, 774 European ancestry ACPA negative RA cases, 1,079 European ancestry controls	887 European ancestry ACPA positive RA cases, 1,218 European ancestry controls	6p21.32	HLA	rs12194148-?	NR	5E-58	(ACPA-positive RA vs controls)			Illumina [1723056] (imputed)	N
614	chr6_cox_hap2	3914960	3914961	rs12195582	25279986	Skibola CF	2014-10-02	Am J Hum Genet	Genome-wide association study identifies five susceptibility loci for follicular lymphoma outside the HLA region.	Follicular lymphoma	2,728 European ancestry cases, 7,758 European ancestry controls	1,795 European ancestry cases, 5,586 European ancestry controls	6p21.32	HLA	rs12195582-T	0.465	5E-100		1.78	[1.69-1.88]	Illumina [up to 21554489]	N
614	chr6_cox_hap2	3915562	3915563	rs9269136	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DRB9	rs9269136-G	NR	1E-11		0.0239787	[0.017-0.031] unit decrease	Affymetrix [321169] (imputed)	N
614	chr6_cox_hap2	3915805	3915810	rs200093869	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Iron deficiency anemia	12,317 European ancestry cases, 468,624 European ancestry controls, 4,618 East Asian ancestry cases, 174,057 East Asian ancestry controls	NA	6p21.32		rs200093869-C	NR	1E-12		0.1142	[0.083-0.146] unit increase	Affymetrix, Illumina [25844780] (imputed)	N
614	chr6_cox_hap2	3915910	3915911	rs9269143	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DRB9	rs9269143-T	NR	2E-9		0.0207074	[0.014-0.027] unit decrease	Affymetrix [319769] (imputed)	N
614	chr6_cox_hap2	3915910	3915911	rs9269143	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DRB9	rs9269143-T	NR	1E-8		0.0198652	[0.013-0.027] unit decrease	Affymetrix [319769] (imputed)	N
614	chr6_cox_hap2	3916102	3916103	rs9378212	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	6p21.32	NR	rs9378212-T	0.469078	7E-211		0.059685	[0.056-0.063] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
614	chr6_cox_hap2	3916102	3916103	rs9378212	27286809	Ligthart S	2016-06-10	BMC Genomics	Bivariate genome-wide association study identifies novel pleiotropic loci for lipids and inflammation.	C-reactive protein levels or HDL-cholesterol levels (pleiotropy)	65,000 individuals (C-reactive protein), 99,900 individuals (HDL-cholesterol)	NA	6p21.32	HLA-DRA	rs9378212-T	NR	7E-10				NR [2501543] (imputed)	N
614	chr6_cox_hap2	3916327	3916328	rs28895267	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.32		rs28895267-C	0.518	1E-110				Affymetrix [10369434] (imputed)	N
614	chr6_cox_hap2	3916327	3916328	rs28895267	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DRB9	rs28895267-T	NR	9E-16		0.0253192	[0.019-0.031] unit increase	Affymetrix [323858] (imputed)	N
614	chr6_cox_hap2	3916327	3916328	rs28895267	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	HLA-DRB9	rs28895267-T	NR	4E-15		0.0247032	[0.019-0.031] unit increase	Affymetrix [127266] (imputed)	N
614	chr6_cox_hap2	3916403	3916404	rs17209866	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p21.32	NR	rs17209866-A	0.453955	2E-344				Affymetrix, Illumina [24649327] (imputed)	N
614	chr6_cox_hap2	3916870	3916871	rs17203563	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28- CD127- CD25++ CD8+ T cell Absolute Count	3,130 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs17203563-A	0.26383	5E-8		0.1789	[0.11-0.24] unit increase	Illumina [18189521] (imputed)	N
614	chr6_cox_hap2	3917128	3917129	rs7453498	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Dementia and core Alzheimer's disease neuropathologic changes	up to 3,887 cases, up to 1,027 controls	NA	6p21.32	intergenic	rs7453498-C	0.8656	3E-6	(Complete)	0.8142	[0.47-1.16] unit increase	Affymetrix, Illumina [NR] (imputed)	N
614	chr6_cox_hap2	3917496	3917497	rs2395191	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic obstructive pulmonary disease	13,530 European ancestry cases, 454,945 European ancestry controls, 4,017 East Asian ancestry cases, 162,653 East Asian ancestry controls	NA	6p21.32		rs2395191-C	NR	9E-10		0.077	[0.052-0.102] unit increase	Affymetrix, Illumina [25843162] (imputed)	N
614	chr6_cox_hap2	3917496	3917497	rs2395191	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8 on Natural Killer T	3,103 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs2395191-C	0.36584	2E-9		0.1751	[0.12-0.23] unit increase	Illumina [18027570] (imputed)	N
614	chr6_cox_hap2	3917496	3917497	rs2395191	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs2395191-C	NR	6E-10		1.1764705	[1.12-1.24]	Affymetrix [7846216] (imputed)	N
614	chr6_cox_hap2	3918055	3918056	rs2395192	33204752	Butler-Laporte G	2020-09-24	Open Forum Infect Dis	Genetic Determinants of Antibody-Mediated Immune Responses to Infectious Diseases Agents: A Genome-Wide and HLA Association Study.	Epstein-Barr virus EA-D antibody levels	7,763 White British ancestry individuals	NA	6p21.32	HLA-DRB9	rs2395192-C	0.440	3E-16		0.13	[0.099-0.161] unit decrease	NR [25472218] (imputed)	N
614	chr6_cox_hap2	3918055	3918056	rs2395192	31102405	Labreche K	2019-05-17	Neuro Oncol	A genome-wide association study identifies susceptibility loci for primary central nervous system lymphoma at 6p25.3 and 3p22.1: a LOC network study.	Primary central nervous system lymphoma	475 European ancestry cases, 1,134 European ancestry controls	NA	6p21.32	HLA-DRA	rs2395192-C	0.59	2E-7		1.51	[1.29-1.76]	Illumina [> 10000000] (imputed)	N
614	chr6_cox_hap2	3918545	3918546	rs4410767	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p21.32		rs4410767-T	0.526	5E-70				Affymetrix [10369434] (imputed)	N
614	chr6_cox_hap2	3918814	3918815	rs9378213	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR+ CD8+ T cell Absolute Count	3,579 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9378213-T	0.69391	5E-15		0.2434	[0.18-0.3] unit decrease	Illumina [18377359] (imputed)	N
614	chr6_cox_hap2	3918814	3918815	rs9378213	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR+ CD8+ T cell %T cell	3,595 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9378213-T	0.6942999999999999	4E-11		0.1984	[0.14-0.26] unit decrease	Illumina [18380839] (imputed)	N
614	chr6_cox_hap2	3918814	3918815	rs9378213	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.32	NOTCH4, C6orf10	rs9378213-G	0.41690000000000005	4E-8	(EA)	0.0227	[0.015-0.031] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
614	chr6_cox_hap2	3918814	3918815	rs9378213	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6p21.32	BTNL2	rs9378213-G	0.41690000000000005	6E-7	(EA)	0.0232	[0.014-0.032] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
614	chr6_cox_hap2	3918814	3918815	rs9378213	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.32	NOTCH4, C6orf10	rs9378213-?	0.41690000000000005	1E-7	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
614	chr6_cox_hap2	3918977	3918978	rs9391786	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Automobile speeding propensity	404,291 European ancestry individuals	NA	6p21.32	HLA-DRB5	rs9391786-A	0.5802	2E-9		0.013639976	[0.0092-0.0181] unit increase	Affymetrix [11514463] (imputed)	N
614	chr6_cox_hap2	3919146	3919147	rs116149201	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cervical cancer	6,563 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs116149201-G	NR	3E-9		3.5068	NR	Affymetrix [7846216] (imputed)	N
614	chr6_cox_hap2	3919404	3919405	rs7749223	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	6p21.32		rs7749223-G	0.167732	2E-9		0.02290938	[0.015-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
614	chr6_cox_hap2	3919827	3919828	rs1964995	31375628	Tengvall K	2019-08-02	Proc Natl Acad Sci U S A	Molecular mimicry between Anoctamin 2 and Epstein-Barr virus nuclear antigen 1 associates with multiple sclerosis risk.	Anti-anoctamin 2 antibody levels	11,936 European ancestry individuals	NA	6p21.32	NR	rs1964995-G	NR	2E-10		0.065	[0.041-0.089] unit decrease	Illumina [615763]	N
614	chr6_cox_hap2	3919827	3919828	rs1964995	31102405	Labreche K	2019-05-17	Neuro Oncol	A genome-wide association study identifies susceptibility loci for primary central nervous system lymphoma at 6p25.3 and 3p22.1: a LOC network study.	Primary central nervous system lymphoma	475 European ancestry cases, 1,134 European ancestry controls	NA	6p21.32	NR	rs1964995-?	NR	4E-6		1.44	[1.23-1.68]	Illumina [> 10000000] (imputed)	N
614	chr6_cox_hap2	3919827	3919828	rs1964995	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (non-Lofgren's syndrome)	568 Swedish ancestry cases, 2,025 Swedish ancestry controls	763 European ancestry cases, 4,901 European ancestry controls, 781 African American ancestry cases, 876 African American ancestry controls	6p21.32	HLA-DRA, HLA-DRB5	rs1964995-A	0.72	3E-32		1.67	[1.54-1.82]	Illumina [118177]	N
614	chr6_cox_hap2	3919827	3919828	rs1964995	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (non-Lofgren's syndrome without extrapulmonary manifestations)	451 Swedish ancestry cases, 2,086 Swedish ancestry controls	NA	6p21.32	HLA-DRA, HLA-DRB5, C6orf10, BTNL2	rs1964995-A	0.7	4E-15		1.8165305	[1.57-2.11]	Illumina [118177]	N
614	chr6_cox_hap2	3919939	3919940	rs9269202	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Nephrotic syndrome	1,314 East Asian ancestry cases, 177,412 East Asian ancestry controls	NA	6p21.32		rs9269202-C	0.823377102	5E-10		0.3571471	[0.24-0.47] unit decrease	Illumina [13429980] (imputed)	N
614	chr6_cox_hap2	3920312	3920313	rs9269207	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs9269207-T	0.622	6E-48		0.754	[0.72-0.79]	Illumina [11270530] (imputed)	N
614	chr6_cox_hap2	3920379	3920380	rs367607265	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.32	Intergenic	rs367607265-?		2E-7		1.74	[1.41-2.14]	Illumina [7645193] (imputed)	N
614	chr6_cox_hap2	3920505	3920506	rs5020946	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PIGA	5,367 Icelandic ancestry individuals	NA	6p21.32		rs5020946-T	0.3884	4E-13		0.140613	[0.1-0.18] unit increase	Illumina [7506463] (imputed)	N
614	chr6_cox_hap2	3920505	3920506	rs5020946	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	6p21.32	intergenic	rs5020946-T	0.4659	1E-94		0.07445833	[0.067-0.082] unit increase	Affymetrix [~ 2500000] (imputed)	N
614	chr6_cox_hap2	3920505	3920506	rs5020946	26785701	Wen W	2016-01-20	Sci Rep	Genome-wide association studies in East Asians identify new loci for waist-hip ratio and waist circumference.	Waist-to-hip ratio adjusted for body mass index	up to 39,869 East Asian individuals	up to 20,137 East Asian individuals, up to 209,947 individuals	6p21.32	HLA-DRB5	rs5020946-T	0.411	1E-9	(East Asian)	0.031	[0.021-0.041] unit increase	Affymetrix, Illumina [at least 1850000] (imputed)	N
614	chr6_cox_hap2	3920505	3920506	rs5020946	26785701	Wen W	2016-01-20	Sci Rep	Genome-wide association studies in East Asians identify new loci for waist-hip ratio and waist circumference.	Waist-to-hip ratio adjusted for body mass index	up to 39,869 East Asian individuals	up to 20,137 East Asian individuals, up to 209,947 individuals	6p21.32	HLA-DRB5	rs5020946-T	0.4108017315260166	4E-8	(East Asian women)	0.03568	[0.023-0.048] unit increase	Affymetrix, Illumina [at least 1850000] (imputed)	N
614	chr6_cox_hap2	3920550	3920551	rs5020945	33209044	Ahn Y	2020-11-12	Diabetes Metab Syndr Obes	Identification of Genetic Variants for Female Obesity and Evaluation of the Causal Role of Genetically Defined Obesity in Polycystic Ovarian Syndrome.	Waist-hip ratio	4,658 Korean ancestry females	5,295 Korean ancestry females	6p21.32	NR	rs5020945-C	0.49	3E-7		0.005	[0.003-0.007] unit increase	Affymetrix [NR] (imputed)	N
614	chr6_cox_hap2	3920996	3920997	rs35957722	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p21.32	NR	rs35957722-?	NR	4E-10		0.0687	[0.047-0.09] unit decrease	Illumina [at least 560000] (imputed)	N
614	chr6_cox_hap2	3925432	3925433	rs113103322	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on plasmacytoid Dendritic Cell	2,872 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs113103322-A	0.11666	2E-27		0.5638	[0.46-0.66] unit increase	Illumina [17926607] (imputed)	N
614	chr6_cox_hap2	3925828	3925829	rs78279385	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	CAG-180 sp000432435 abundance in stool	5,959 Finnish ancestry individuals	NA	6p21.32		rs78279385-A	0.255984	3E-8		0.158067	[0.1-0.21] unit increase	Illumina [7980478] (imputed)	N
614	chr6_cox_hap2	3925828	3925829	rs78279385	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	74,970 East Asian ancestry individuals	NA	6p21.32		rs78279385-A	0.478006	1E-14		0.0379801	[0.028-0.048] unit increase	Illumina [13465896] (imputed)	N
614	chr6_cox_hap2	3925832	3925833	rs9269233	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs9269233-A	0.23	3E-11		1.17	[1.12-1.22]	Illumina [11270530] (imputed)	N
614	chr6_cox_hap2	3925858	3925859	rs9269234	28118524	Saxena R	2017-01-24	Arthritis Rheumatol	A Multinational Arab Genome-Wide Association Study Identifies New Genetic Associations for Rheumatoid Arthritis.	Rheumatoid arthritis (rheumatoid factor and/or anti-cyclic citrullinated peptide seropositive)	357 African admixed and non-African admixed Arab ancestry cases, 352 African admixed and non-African admixed Arab ancestry controls	234 Arab ancestry cases, 225 Arab ancestry controls	6p21.32	HLA-DRB1	rs9269234-G	0.65	6E-16		2.14	[1.78-2.57]	Illumina [7000653] (imputed)	N
614	chr6_cox_hap2	3925858	3925859	rs9269234	28118524	Saxena R	2017-01-24	Arthritis Rheumatol	A Multinational Arab Genome-Wide Association Study Identifies New Genetic Associations for Rheumatoid Arthritis.	Rheumatoid arthritis	97 African admixed Arab ancestry cases, 410 non-African admixed Arab ancestry cases, 4 Arab ancestry cases, 56 African admixed Arab ancestry controls, 290 non-African admixed Arab ancestry controls, 6 Arab ancestry controls	283 Arab ancestry cases, 221 Arab ancestry controls	6p21.32	HLA-DRB1	rs9269234-G	0.65	5E-11		1.75	[1.48-2.06]	Illumina [7000653] (imputed)	N
614	chr6_cox_hap2	3926017	3926018	rs2395203	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on plasmacytoid Dendritic Cell	2,872 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs2395203-G	0.0565	3E-13		0.4964	[0.36-0.63] unit increase	Illumina [17926607] (imputed)	N
614	chr6_cox_hap2	3926124	3926125	rs2395205	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on Dendritic Cell	2,871 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs2395205-G	0.04986	7E-10		0.4528	[0.31-0.6] unit increase	Illumina [17926566] (imputed)	N
614	chr6_cox_hap2	3926215	3926216	rs1974459	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	6p21.32		rs1974459-G	0.068544	5E-19		0.040665817	[0.032-0.05] unit increase	Affymetrix [93095623] (imputed)	N
614	chr6_cox_hap2	3926480	3926481	rs2395209	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Receptor for advanced glycosylation end products levels	21,758 European ancestry individuals	9,173 individuals	6p21.32		rs2395209-T	0.16	1E-17		0.1071	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
614	chr6_cox_hap2	3926543	3926544	rs28599891	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	6p21.32	intergenic	rs28599891-G	0.7051	5E-14		0.03041702	[0.023-0.038] unit increase	Affymetrix [~ 2500000] (imputed)	N
614	chr6_cox_hap2	3926660	3926661	rs28368843	33119750	Vergara C	2020-10-29	J Infect Dis	A multi-ancestry sex stratified genome-wide association study of spontaneous clearance of hepatitis C virus.	Hepatitis C (spontaneous viral clearance)	239 African ancestry male cases, 1,184 African ancestry male controls, 206 African ancestry female cases, 572 African ancestry female controls, 489 European ancestry male cases, 703 European ancestry male controls, 212 European ancestry female cases, 332 European ancestry female controls, 91 Hispanic male cases, 197 Hispanic male controls, 82 Hispanic female cases, 116 Hispanic female controls	NA	6p21.32	NR	rs28368843-T	0.07	5E-7	(female)	2.38	[NR]	Illumina [5730693] (imputed)	N
614	chr6_cox_hap2	3926675	3926676	rs28453249	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	HLA-DRB9	rs28453249-T	NR	2E-13		0.021088	[0.015-0.027] unit increase	Affymetrix [321114] (imputed)	N
614	chr6_cox_hap2	3926699	3926700	rs28561769	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p21.32	NR	rs28561769-G	0.459185	3E-228				Affymetrix, Illumina [23114412] (imputed)	N
614	chr6_cox_hap2	3927263	3927264	rs6916742	26819262	Zhou Y	2016-01-27	Mult Scler	Genetic loci for Epstein-Barr virus nuclear antigen-1 are associated with risk of multiple sclerosis.	Epstein Barr virus nuclear antigen 1 IgG levels	1,243 parents and up to 2,356 children from 992 families, 1,956 Mexican American individuals		6p21.32	HLA-DRA, HLA-DRB5, HLA-DQA1, HLA-DRB1	rs6916742-C	0.569	6E-6	(non-Mexican American children)	0.16	unit decrease	Illumina [up to 2428201] (imputed)	N
614	chr6_cox_hap2	3927343	3927344	rs138024423	33589587	Sakaue S	2021-02-15	Nat Commun	Genetic determinants of risk in autoimmune pulmonary alveolar proteinosis.	Autoimmune pulmonary alveolar proteinosis	198 Japanese ancestry cases, 395 Japanese ancestry controls	NA	6p21.32		rs138024423-G	0.072	2E-12		5.2	[3.3-8.2]	Illumina [12153232] (imputed)	N
614	chr6_cox_hap2	3927662	3927663	rs76733997	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DRB9	rs76733997-A	NR	3E-13		0.0290897	[0.021-0.037] unit decrease	Affymetrix [323858] (imputed)	N
614	chr6_cox_hap2	3927925	3927926	rs112112734	31596875	Traylor M	2019-10-09	PLoS One	Genetic associations with radiological damage in rheumatoid arthritis: Meta-analysis of seven genome-wide association studies of 2,775 cases.	Joint damage in rheumatoid arthritis	2,527 European ancestry individuals, 196 African ancestry individuals, 52 individuals	NA	6p21.32	HLA-DRB5, HLA-DRB6, HLA-DRB1	rs112112734-?	NR	4E-8				Affymetrix, Illumina [4802696] (imputed)	N
614	chr6_cox_hap2	3927925	3927926	rs112112734	31596875	Traylor M	2019-10-09	PLoS One	Genetic associations with radiological damage in rheumatoid arthritis: Meta-analysis of seven genome-wide association studies of 2,775 cases.	Joint damage in rheumatoid arthritis	2,527 European ancestry individuals	NA	6p21.32	intergenic	rs112112734-?	NR	9E-8				Affymetrix, Illumina [2723488] (imputed)	N
614	chr6_cox_hap2	3928008	3928009	rs112062732	32723749	Kwon YC	2020-07-28	Ann Rheum Dis	Genome-wide association study in a Korean population identifies six novel susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis	4,068 Korean ancestry cases, 36,487 Korean ancestry controls	NA	6p21.32	HLA-DRB1	rs112062732-?		6E-227		2.44	[2.31-2.58]	Illumina [NR] (imputed)	N
614	chr6_cox_hap2	3928008	3928009	rs112062732	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	6p21.32	intergenic	rs112062732-C	0.4128	3E-30		0.04384147	[0.036-0.051] unit increase	Affymetrix [~ 2500000] (imputed)	N
614	chr6_cox_hap2	3928361	3928362	rs75219938	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs75219938-T	0.299	7E-13	(Rac GTPase-activating protein 1, RACGAP1.13587.10.3)	0.22	[0.16-0.28] unit decrease	Affymetrix [10572788] (imputed)	N
614	chr6_cox_hap2	3928361	3928362	rs75219938	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs75219938-T	0.299	4E-49	(HLA class II histocompatibility antigen, DQ alpha 2 chain, HLA.DQA2.7757.5.3)	0.45	[0.39-0.51] unit increase	Affymetrix [10572788] (imputed)	N
615	chr6_cox_hap2	3969046	3969047	rs111945767	26562150	Seldin MF	2015-10-10	Mol Med	Genome-wide Association Study of Late-Onset Myasthenia Gravis: Confirmation of TNFRSF11A, and Identification of ZBTB10 and Three Distinct HLA Associations.	Late-onset myasthenia gravis	532 European ancestry cases, 2,128 European ancestry controls	NA	6p21.32	MHC_Class II	rs111945767-G	0.38	3E-17		1.923077	[1.64-2.27]	Illumina [6175472] (imputed)	N
615	chr6_cox_hap2	3970437	3970438	rs138453460	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	6p21.32		rs138453460-G	0.942891	1E-8		0.0549043	[0.036-0.074] unit increase	NR [11722792] (imputed)	N
615	chr6_cox_hap2	3971019	3971020	rs28490179	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	RNU1-61P	rs28490179-C	NR	1E-9		0.0229135	[0.016-0.03] unit increase	Affymetrix [321016] (imputed)	N
615	chr6_cox_hap2	3972904	3972905	rs3828840	23472185	Mero IL	2013-03-05	PLoS One	Oligoclonal band status in Scandinavian multiple sclerosis patients is associated with specific genetic risk alleles.	Multiple sclerosis (OCB status)	1,367 European ancestry OCB positive cases, 161 European ancestry OCB negative cases, 428 European ancestry controls	NA	6p21.32	HLA-DRB1	rs3828840-?	NR	5E-15	(OCB positive vs. controls)	1.94	[1.64-2.29]	Illumina [495970]	N
615	chr6_cox_hap2	3974143	3974144	rs35467127	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DRB6	rs35467127-T	NR	1E-13		0.0263989	[0.019-0.033] unit increase	Affymetrix [319769] (imputed)	N
615	chr6_cox_hap2	3974143	3974144	rs35467127	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DRB6	rs35467127-T	NR	2E-13		0.0262282	[0.019-0.033] unit increase	Affymetrix [319769] (imputed)	N
615	chr6_cox_hap2	3974143	3974144	rs35467127	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DRB6	rs35467127-T	NR	1E-10		0.0232493	[0.016-0.03] unit increase	Affymetrix [321169] (imputed)	N
615	chr6_cox_hap2	3974143	3974144	rs35467127	33549134	Adolphe C	2021-02-06	Genome Med	Genetic and functional interaction network analysis reveals global enrichment of regulatory T cell genes influencing basal cell carcinoma susceptibility.	Basal cell carcinoma	17,416 European ancestry cases, 375,455 European ancestry controls	NA	6p21.32	HLA-DRB6	rs35467127-T	0.190482	7E-12		0.09424036	[0.067-0.121] unit increase	Affymetrix [7260263] (imputed)	N
615	chr6_cox_hap2	3992471	3992472	rs576084184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-3 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	6p21.32		rs576084184-C	0.879346	4E-8		0.0410099	[0.026-0.056] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	3992840	3992841	rs75380949	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	6p21.32	HLA-DRB6	rs75380949-T	NR	4E-33		1.208	[1.18-1.24]	Affymetrix [9000000] (imputed)	N
615	chr6_cox_hap2	3993634	3993635	rs41293330	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.32	HLA-DRB1, HLA-DRB5, HLA-DRB6	rs41293330-T		2E-9		1.09	[1.06-1.12]	Affymetrix, Illumina [NR]	N
615	chr6_cox_hap2	3994679	3994680	rs115231074	26450422	DeLorenze GN	2015-10-08	J Infect Dis	Polymorphisms in HLA Class II Genes Are Associated With Susceptibility to Staphylococcus aureus Infection in a White Population.	Staphylococcus aureus infection	4,701 European ancestry cases, 45,344 European ancestry controls	NA	6p21.32	HLA-DRB1	rs115231074-T	NR	1E-10		1.22	[NR]	Affymetrix [at least 584535] (imputed)	N
615	chr6_cox_hap2	3994679	3994680	rs115231074	26450422	DeLorenze GN	2015-10-08	J Infect Dis	Polymorphisms in HLA Class II Genes Are Associated With Susceptibility to Staphylococcus aureus Infection in a White Population.	Skin and soft tissue Staphylococcus aureus infection	2,130 European ancestry cases, 45,434 European ancestry controls	NA	6p21.32	HLA-DRB1	rs115231074-T	NR	5E-8		1.28	[NR]	Affymetrix [at least 584535] (imputed)	N
615	chr6_cox_hap2	3994932	3994933	rs9269511	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p21.32		rs9269511-C	0.158	1E-16				Affymetrix [10369434] (imputed)	N
615	chr6_cox_hap2	3995210	3995211	rs41294271	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.32	HLA-DRB1	rs41294271-?		3E-8		1.1111112	[1.06-1.15]	Affymetrix, Illumina [NR]	N
615	chr6_cox_hap2	3995754	3995755	rs115468973	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	6p21.32	HLA-DRB6	rs115468973-T	NR	3E-23		1.267	[1.22-1.31]	Affymetrix [9000000] (imputed)	N
615	chr6_cox_hap2	3996325	3996326	rs9269573	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs9269573-A	0.861	6E-29	(GDH/6PGL endoplasmic bifunctional protein, H6PD.7161.25.3)	0.39	[0.31-0.47] unit decrease	Affymetrix [10572788] (imputed)	N
615	chr6_cox_hap2	3996990	3996991	rs35511257	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	6p21.32	HLA-DRB1	rs35511257-C	0.0956	7E-10		0.003	[0.002-0.004] unit decrease	Affymetrix [15275733] (imputed)	N
615	chr6_cox_hap2	3996995	3996996	rs34363414	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs34363414-T	0.15	4E-27	(Ubiquitin carboxyl-terminal hydrolase 25, USP25.9215.117.3)	0.39	[0.31-0.47] unit increase	Affymetrix [10572788] (imputed)	N
615	chr6_cox_hap2	3996995	3996996	rs34363414	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs34363414-T	0.15	1E-33	(Complement C4, C4A.C4B.4481.34.2)	0.43	[0.35-0.51] unit increase	Affymetrix [10572788] (imputed)	N
615	chr6_cox_hap2	3998270	3998271	rs1064713	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	6p21.32	HLA-DRB6	rs1064713-A	NR	1E-25		1.205	[1.17-1.24]	Affymetrix [9000000] (imputed)	N
615	chr6_cox_hap2	3998801	3998802	rs9256938	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs9256938-A	0.737	2E-12	(Complement factor B, CFB.4129.72.1)	0.23	[0.17-0.29] unit increase	Affymetrix [10572788] (imputed)	N
615	chr6_cox_hap2	3999801	3999802	rs1059362	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs1059362-A	0.17	7E-35	(Complement C4, C4A.C4B.4481.34.2)	0.45	[0.37-0.53] unit increase	Affymetrix [10572788] (imputed)	N
615	chr6_cox_hap2	4000169	4000170	rs149717632	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Antisaccade task score	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	6p21.32	HLA-DRB1	rs149717632-G	NR	3E-6		0.15448512	[0.094-0.215] unit decrease	Illumina [> 6200000] (imputed)	N
615	chr6_cox_hap2	4000750	4000751	rs707954	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6p21.32	NR	rs707954-A	0.3039	1E-13		1.062	[1.046-1.078]	Affymetrix [15688218] (imputed)	N
615	chr6_cox_hap2	4000780	4000781	rs112796209	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	6p21.32	NR	rs112796209-?	NR	1E-10				Affymetrix [~ 8270000] (imputed)	N
615	chr6_cox_hap2	4001125	4001126	rs41293179	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.32	HLA-DRB1, HLA-DRB5, HLA-DRB6	rs41293179-?		2E-11		1.1111112	[1.08-1.14]	Affymetrix, Illumina [NR]	N
615	chr6_cox_hap2	4001161	4001162	rs142790902	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.32	HLA-DRB1	rs142790902-T		1E-11		1.22	[1.15-1.29]	Affymetrix, Illumina [NR]	N
615	chr6_cox_hap2	4001353	4001354	rs35789108	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs35789108-?	NR	2E-23				Affymetrix [~ 8270000] (imputed)	N
615	chr6_cox_hap2	4001550	4001551	rs9269853	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease (late onset)	24,087 European ancestry cases, 55,058 European ancestry controls	NA	6p21.32	HLA-DRB1	rs9269853-A	NR	3E-8		5.5623274	NR z-score increase	Illumina [up to 9862738] (imputed)	N
615	chr6_cox_hap2	4002930	4002931	rs144660248	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.32	HLA-DRB1, HLA-DRB5, HLA-DRB6	rs144660248-?		6E-13		1.1764705	[1.12-1.23]	Affymetrix, Illumina [NR]	N
615	chr6_cox_hap2	4003276	4003277	rs17882603	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	6p21.32	NR	rs17882603-T	0.465812	3E-11		0.0493398	[0.035-0.064] unit decrease	Affymetrix [17914406] (imputed)	N
615	chr6_cox_hap2	4003304	4003305	rs17885382	25987655	Fernandez CA	2015-05-18	Blood	Genome-wide analysis links NFATC2 with asparaginase hypersensitivity.	Asparaginase hypersensitivity in acute lymphoblastic leukemia	3,126 child cases	182 child cases	6p21.32	HLA-DRB1	rs17885382-T		3E-6		1.627		Affymetrix [NR]	N
615	chr6_cox_hap2	4003660	4003661	rs11753207	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.32	HLA-DRB1, HLA-DRB5, HLA-DRB6	rs11753207-A		3E-11		1.1	[1.07-1.13]	Affymetrix, Illumina [NR]	N
615	chr6_cox_hap2	4003958	4003959	rs9270000	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total concentration of lipoprotein particles	115,082 European ancestry individuals	NA	6p21.32		rs9270000-G	0.57364	1E-11		0.030461	[0.022-0.039] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4003958	4003959	rs9270000	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small HDL particles	115,082 European ancestry individuals	NA	6p21.32		rs9270000-G	0.57364	2E-17		0.0405784	[0.031-0.05] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4003958	4003959	rs9270000	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small HDL	115,082 European ancestry individuals	NA	6p21.32		rs9270000-G	0.57364	2E-14		0.0365295	[0.027-0.046] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4003958	4003959	rs9270000	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small HDL	115,082 European ancestry individuals	NA	6p21.32		rs9270000-G	0.57364	4E-16		0.0387141	[0.029-0.048] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4014070	4014071	rs34415150	33510174	Jones G	2021-01-28	Nat Commun	Genome-wide meta-analysis of muscle weakness identifies 15 susceptibility loci in older men and women.	Low hand grip strength (60 years and older) (FNIH)	20,335 European ancestry cases, 236,188 European ancestry controls	NA	6p21.32	HLA-DRB1	rs34415150-G	0.18	6E-16		0.1158	unit increase	Affymetrix, Illumina [9465622] (imputed)	N
615	chr6_cox_hap2	4014070	4014071	rs34415150	33510174	Jones G	2021-01-28	Nat Commun	Genome-wide meta-analysis of muscle weakness identifies 15 susceptibility loci in older men and women.	Low hand grip strength (60 years and older) (EWGSOP)	48,596 European ancestry cases, 207,927 European ancestry controls	NA	6p21.32	HLA-DRB1	rs34415150-A	0.822	4E-17		0.0833	[0.064-0.103] unit decrease	Affymetrix, Illumina [9457422] (imputed)	N
615	chr6_cox_hap2	4014070	4014071	rs34415150	33510174	Jones G	2021-01-28	Nat Commun	Genome-wide meta-analysis of muscle weakness identifies 15 susceptibility loci in older men and women.	Low hand grip strength (60 years and older) (EWGSOP)	34,589 European ancestry female cases, 100,879 European ancestry female controls	NA	6p21.32	HLA-DRB1	rs34415150-G	0.18	1E-16		0.1001	unit increase	Affymetrix, Illumina [9449805] (imputed)	N
615	chr6_cox_hap2	4014070	4014071	rs34415150	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	6p21.32	NR	rs34415150-A	0.815874	2E-52		0.0399601	[0.035-0.045] unit decrease	NR [NR]	N
615	chr6_cox_hap2	4014224	4014225	rs35118762	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (immunosuppressants)	3,954 European ancestry cases, 268,648 European ancestry controls, 3,483 East Asian ancestry cases, 175,243 East Asian ancestry controls	NA	6p21.32		rs35118762-T	NR	1E-120		0.4878	[0.45-0.53] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
615	chr6_cox_hap2	4014345	4014346	rs7768875	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on IgD+ CD38+ B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs7768875-T	0.47719	3E-8		0.1706	[0.11-0.23] unit decrease	Illumina [18238311] (imputed)	N
615	chr6_cox_hap2	4014364	4014365	rs2760975	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	6p21.32	HLA-DRB1	rs2760975-A	0.168	5E-12		0.003	[0.0022-0.0038] unit decrease	Affymetrix [15275733] (imputed)	N
615	chr6_cox_hap2	4014364	4014365	rs2760975	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	223,215 British ancestry individuals	111,610 British ancestry individuals	6p21.32	HLA-DRB1	rs2760975-A	0.17	1E-9		0.003	[0.002-0.004] unit decrease	Affymetrix [15275733] (imputed)	N
615	chr6_cox_hap2	4014422	4014423	rs28366297	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	6p21.32		rs28366297-C	0.30822	1E-6		0.035757	[0.021-0.05] unit increase	Affymetrix [15580782] (imputed)	N
615	chr6_cox_hap2	4014463	4014464	rs28366299	33143745	Andlauer TFM	2020-11-04	BMC Med	Treatment- and population-specific genetic risk factors for anti-drug antibodies against interferon-beta: a GWAS.	Neutralising antibody response to interferon beta therapy in multiple sclerosis (presence of antibodies; IFN?-1b subcutaneous)	up to 2,000 German and Swedish ancestry individuals	up to 757 German and Swedish ancestry individuals	6p21.32		rs28366299-A	0.19	7E-19		1.27	[1.0-1.54] unit increase	Illumina [8550834] (imputed)	N
615	chr6_cox_hap2	4014476	4014477	rs28366301	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	High density lipoprotein cholesterol levels	70,657 Japanese ancestry individuals	NA	6p21.32	HLA-DRB1, HLA-DQA1	rs28366301-?	NR	8E-11		0.03687	[0.026-0.048] unit increase novel	Illumina [6108953] (imputed)	N
615	chr6_cox_hap2	4014660	4014661	rs9270576	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	78,744 East Asian ancestry individuals	NA	6p21.32	NR	rs9270576-C	0.620915	3E-28		0.071855	[0.059-0.085] SD units increase	Affymetrix, Illumina [16289093] (imputed)	N
615	chr6_cox_hap2	4014875	4014876	rs35525122	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on myeloid Dendritic Cell	2,872 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs35525122-A	0.10869	1E-65		0.8525	[0.76-0.95] unit increase	Illumina [17926605] (imputed)	N
615	chr6_cox_hap2	4014892	4014893	rs9270585	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on CD14+ monocyte	3,629 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9270585-T	0.5757300000000001	6E-92		0.5871	[0.53-0.64] unit decrease	Illumina [18218967] (imputed)	N
615	chr6_cox_hap2	4014892	4014893	rs9270585	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on CD14+ CD16- monocyte	3,629 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9270585-T	0.5757300000000001	3E-98		0.6054	[0.55-0.66] unit decrease	Illumina [18218967] (imputed)	N
615	chr6_cox_hap2	4014919	4014920	rs9270588	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on monocyte	3,629 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9270588-T	0.5771	3E-78		0.5388	[0.48-0.59] unit decrease	Illumina [18218967] (imputed)	N
615	chr6_cox_hap2	4014919	4014920	rs9270588	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on CD33+ HLA DR+ CD14dim	1,578 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9270588-T	0.43503	8E-26		0.4302	[0.35-0.51] unit decrease	Illumina [16958370] (imputed)	N
615	chr6_cox_hap2	4014919	4014920	rs9270588	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on CD33+ HLA DR+ CD14-	1,579 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9270588-T	0.43507	2E-49		0.5992	[0.52-0.68] unit decrease	Illumina [16961968] (imputed)	N
615	chr6_cox_hap2	4014962	4014963	rs35139284	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Rheumatoid arthritis	8,255 European ancestry cases, 409,001 European ancestry controls, 5,348 East Asian ancestry cases, 173,268 East Asian ancestry controls	NA	6p21.32		rs35139284-T	NR	4E-287		0.5387	[0.51-0.57] unit increase	Affymetrix, Illumina [25835038] (imputed)	N
615	chr6_cox_hap2	4014962	4014963	rs35139284	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DRB1	rs35139284-T	NR	4E-17		0.0253723	[0.019-0.031] unit increase	Affymetrix [319769] (imputed)	N
615	chr6_cox_hap2	4014962	4014963	rs35139284	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DRB1	rs35139284-T	NR	8E-11		0.0218487	[0.015-0.028] unit increase	Affymetrix [323858] (imputed)	N
615	chr6_cox_hap2	4014962	4014963	rs35139284	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DRB1	rs35139284-T	NR	1E-16		0.0250062	[0.019-0.031] unit increase	Affymetrix [319769] (imputed)	N
615	chr6_cox_hap2	4014962	4014963	rs35139284	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	HLA-DRB1	rs35139284-T	NR	4E-10		0.0210099	[0.014-0.028] unit increase	Affymetrix [127266] (imputed)	N
615	chr6_cox_hap2	4014962	4014963	rs35139284	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	HLA-DRB1	rs35139284-T	NR	1E-8		0.0174619	[0.011-0.023] unit increase	Affymetrix [321114] (imputed)	N
615	chr6_cox_hap2	4014962	4014963	rs35139284	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DRB1	rs35139284-T	NR	5E-16		0.0247016	[0.019-0.031] unit increase	Affymetrix [321169] (imputed)	N
615	chr6_cox_hap2	4014962	4014963	rs35139284	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	6p21.32	HLA-DRB1, HLA-DQA1	rs35139284-T	0.32	7E-23		9.85	z-score increase	Affymetrix [4311822] (imputed)	N
615	chr6_cox_hap2	4014962	4014963	rs35139284	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on B cell	3,660 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs35139284-T	0.40599	4E-10		0.183	[0.13-0.24] unit increase	Illumina [18238700] (imputed)	N
615	chr6_cox_hap2	4014967	4014968	rs201291779	34108613	Ivarsdottir EV	2021-06-09	Commun Biol	The genetic architecture of age-related hearing impairment revealed by genome-wide association analysis.	Age-related hearing impairment	121,934 European ancestry cases, 591,699 European ancestry controls	NA	6p21.32	HLA-DRB1	rs201291779-T	1.58	5E-14	(additive)	1.15	[NR]	Affymetrix, Illumina [46900000] (imputed)	N
615	chr6_cox_hap2	4015016	4015017	rs9270591	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Monocytic Myeloid-Derived Suppressor Cells Absolute Count	1,855 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9270591-T	0.43396	5E-26		0.4161	[0.34-0.49] unit increase	Illumina [17197940] (imputed)	N
615	chr6_cox_hap2	4015016	4015017	rs9270591	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR++ monocyte %leukocyte	3,595 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9270591-T	0.5705100000000001	7E-18		0.2715	[0.21-0.33] unit decrease	Illumina [18380843] (imputed)	N
615	chr6_cox_hap2	4015016	4015017	rs9270591	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on Hematopoietic Stem Cell	1,634 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9270591-T	0.43702	3E-48		0.5658	[0.49-0.64] unit decrease	Illumina [16999215] (imputed)	N
615	chr6_cox_hap2	4015249	4015250	rs9270599	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on B cell	3,060 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9270599-A	0.62618	3E-65		0.5573	[0.49-0.62] unit increase	Illumina [18012789] (imputed)	N
615	chr6_cox_hap2	4015855	4015856	rs28366348	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	6p21.32		rs28366348-A	0.728713	1E-9		0.0290399	[0.02-0.038] unit increase	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4015926	4015927	rs35372932	35023831	Chong M	2022-01-13	Elife	GWAS and ExWAS of blood Mitochondrial DNA copy number identifies 71 loci and highlights a potential causal role in dementia.	Mitochondrial DNA copy number	395,718 British, Irish, Other White, South Asian, African ancestry individuals	NA	6p21.32	NR	rs35372932-T	0.170327	4E-9		0.0251	[0.017-0.034] unit decrease	Affymetrix [23037915] (imputed)	N
615	chr6_cox_hap2	4016078	4016079	rs28366357	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DRB1	rs28366357-T	NR	4E-11		0.0208439	[0.015-0.027] unit decrease	Affymetrix [323123] (imputed)	N
615	chr6_cox_hap2	4016141	4016142	rs2760980	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on CD33- HLA DR+	1,635 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs2760980-A	0.10748	2E-60		1.049	[0.93-1.17] unit increase	Illumina [16999305] (imputed)	N
615	chr6_cox_hap2	4016153	4016154	rs28366362	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.32		rs28366362-C	0.409768	4E-26		0.029002981	[0.024-0.034] unit increase	Affymetrix [93095623] (imputed)	N
615	chr6_cox_hap2	4016405	4016406	rs2760981	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.32	BTNL2, C6orf10, HCG23, HLA-DQA1, HLA-DRA, HLA-DRB1, HLA-DRB5, HLA-DRB6	rs2760981-?		4E-11		1.0752687	[1.05-1.1]	Affymetrix, Illumina [NR]	N
615	chr6_cox_hap2	4016473	4016474	rs9270632	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.32		rs9270632-G	0.676	3E-48				Affymetrix [10369434] (imputed)	N
615	chr6_cox_hap2	4016618	4016619	rs9270637	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs9270637-G	0.293	9E-20	(Complement C4, C4A.C4B.4481.34.2)	0.24	[0.18-0.3] unit decrease	Affymetrix [10572788] (imputed)	N
615	chr6_cox_hap2	4016620	4016621	rs28383169	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	6p21.32		rs28383169-G	0.44037	4E-19		0.0246375	[0.019-0.03] unit decrease	Illumina [13479924] (imputed)	N
615	chr6_cox_hap2	4016733	4016734	rs117726495	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs affecting bone structure and mineralization)	7,870 European ancestry cases, 207,798 European ancestry controls, 6,143 East Asian ancestry cases, 172,583 East Asian ancestry controls	NA	6p21.32		rs117726495-A	NR	8E-16		0.2102	[0.16-0.26] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
615	chr6_cox_hap2	4016773	4016774	rs9270647	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DRB1	rs9270647-C	NR	9E-12		0.0207928	[0.015-0.027] unit decrease	Affymetrix [319769] (imputed)	N
615	chr6_cox_hap2	4016773	4016774	rs9270647	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DRB1	rs9270647-C	NR	2E-12		0.0216513	[0.016-0.028] unit decrease	Affymetrix [321169] (imputed)	N
615	chr6_cox_hap2	4017063	4017064	rs2647078	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs2647078-C	0.806	9E-21		0.803	[0.76-0.85]	Illumina [11270530] (imputed)	N
615	chr6_cox_hap2	4017544	4017545	rs4329147	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	6p21.32	HLA-DRB1	rs4329147-T	0.83	1E-11		1.11	[1.09-1.13]	Illumina [at least 560000] (imputed)	N
615	chr6_cox_hap2	4017544	4017545	rs4329147	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	6p21.32	HLA-DRB5, HLA-DQA1	rs4329147-?	NR	1E-11		1.111	[1.078-1.146]	Illumina [13754664] (imputed)	N
615	chr6_cox_hap2	4018228	4018229	rs687308	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (immunosuppressants)	3,954 European ancestry cases, 268,648 European ancestry controls	NA	6p21.32	HLA-DRB1	rs687308-T	0.191895	2E-84		0.5610923	[0.5-0.62] unit increase	Affymetrix [7288503] (imputed)	N
615	chr6_cox_hap2	4019108	4019109	rs7450706	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	6p21.32		rs7450706-T	0.046397	4E-13		0.040589344	[0.03-0.052] unit decrease	Affymetrix [93095623] (imputed)	N
615	chr6_cox_hap2	4019261	4019262	rs9270747	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)(bidirectional)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs9270747-A	NR	2E-32				Affymetrix [7846216] (imputed)	N
615	chr6_cox_hap2	4019315	4019316	rs9270750	26956414	Berndt SI	2016-03-09	Nat Commun	Meta-analysis of genome-wide association studies discovers multiple loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	3,100 European ancestry cases, 7,667 European ancestry controls	1,958 cases,  5,530 controls	6p21.32	HLA-DQB1, HLA-DRB1, HLA-DRB5	rs9270750-A	0.543	6E-16		1.32	[1.23-1.41]	Affymetrix, Illumina [~ 8500000] (imputed)	N
615	chr6_cox_hap2	4020039	4020040	rs9270779	29769521	Ramirez J	2018-05-16	Nat Commun	Thirty loci identified for heart rate response to exercise and recovery implicate autonomic nervous system.	Heart rate response to exercise	up to 35,455 European ancestry females, up to 31,802 European ancestry males	NA	6p21.32	HLA-DRB5, HLA-DRB1	rs9270779-T	0.323	1E-8	(females)	0.538	[0.35-0.72] bpm decrease	Affymetrix [~ 7800000] (imputed)	N
615	chr6_cox_hap2	4020286	4020287	rs9270798	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DRB1	rs9270798-A	NR	2E-8		0.0191935	[0.013-0.026] unit decrease	Affymetrix [319769] (imputed)	N
615	chr6_cox_hap2	4020438	4020439	rs140177540	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p21.32	HLA-DRB1	rs140177540-?	0.47	5E-15		1.06	[1.05-1.07]	Illumina [at least 560000] (imputed)	N
615	chr6_cox_hap2	4020675	4020676	rs477515	25817017	Carmona FD	2015-03-26	Am J Hum Genet	A large-scale genetic analysis reveals a strong contribution of the HLA class II region to giant cell arteritis susceptibility.	Giant cell arteritis	1,651 European ancestry cases, 15,306 European ancestry controls	NA	6p21.32	HLA-DRB1, HLA-DQA1	rs477515-?		4E-40		1.73	[1.59-1.87]	Illumina [95416]	N
615	chr6_cox_hap2	4020675	4020676	rs477515	24282030	Pan L	2013-11-28	Hum Mol Genet	A genome-wide association study identifies polymorphisms in the HLA-DR region associated with non-response to hepatitis B vaccination in Chinese Han populations.	Hepatitis B vaccine response	108 Han Chinese ancestry high-responder cases, 77 Han Chinese ancestry non-responder controls	1,336 Han Chinese ancestry high-responder cases, 420 Han Chinese ancestry non-responder controls	6p21.32	HLA-DRA, BTNL2, HLA-DRB1, C6orf10	rs477515-T	0.442	3E-19		2.05	[1.75-2.41]	Illumina [588026]	N
615	chr6_cox_hap2	4020675	4020676	rs477515	23326239	Rubicz R	2013-01-10	PLoS Genet	A genome-wide integrative genomic study localizes genetic factors influencing antibodies against Epstein-Barr virus nuclear antigen 1 (EBNA-1).	Epstein-Barr virus immune response (EBNA-1)	1,367 Mexican American indivduals	589 Mexican American indivduals	6p21.32	HLA-DRB1	rs477515-T	0.32	3E-13	(Quantitative)	0.28	[NR] unit decrease	Illumina [944565]	N
615	chr6_cox_hap2	4020675	4020676	rs477515	18758464	Kugathasan S	2008-08-31	Nat Genet	Loci on 20q13 and 21q22 are associated with pediatric-onset inflammatory bowel disease.	Inflammatory bowel disease	1,011 European ancestry cases, 4,250 European ancestry controls	1,922 European ancestry cases, 14,124 European ancestry controls	6p21.32	HLA-DQA1	rs477515-?	0.69	1E-8		1.38	[1.23-1.54]	Illumina [NR]	N
615	chr6_cox_hap2	4020914	4020915	rs116763083	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	HLA-DRB1	rs116763083-A	0.026	4E-16	(C-C motif chemokine 19, CCL19.4922.13.1)	0.63	[0.47-0.79] unit increase	Affymetrix [10572788] (imputed)	N
615	chr6_cox_hap2	4021292	4021293	rs34039593	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on plasmacytoid Dendritic Cell	2,872 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs34039593-G	0.11165	6E-146		1.217	[1.13-1.3] unit increase	Illumina [17926607] (imputed)	N
615	chr6_cox_hap2	4021292	4021293	rs34039593	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on Dendritic Cell	2,871 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs34039593-G	0.11169	4E-110		1.075	[0.98-1.17] unit increase	Illumina [17926566] (imputed)	N
615	chr6_cox_hap2	4021292	4021293	rs34039593	29534301	Nishida N	2018-03-13	Hepatology	Key HLA-DRB1-DQB1 haplotypes and role of the BTNL2 gene for response to a hepatitis B vaccine.	Response to hepatitis B vaccine	107 Japanese ancestry low responder individuals, 351 Japanese ancestry intermediate responder individuals, 735 Japanese ancestry high responder individuals	NA	6p21.32	HLA-DQA1	rs34039593-?		6E-12		0.2	unit increase	Affymetrix [427664]	N
615	chr6_cox_hap2	4021381	4021382	rs2516049	31596875	Traylor M	2019-10-09	PLoS One	Genetic associations with radiological damage in rheumatoid arthritis: Meta-analysis of seven genome-wide association studies of 2,775 cases.	Joint damage in rheumatoid arthritis	2,527 European ancestry individuals	NA	6p21.32	intergenic	rs2516049-?	NR	3E-6	(adjusted for rheumatoid factor)			Affymetrix, Illumina [2723488] (imputed)	N
615	chr6_cox_hap2	4021381	4021382	rs2516049	31375628	Tengvall K	2019-08-02	Proc Natl Acad Sci U S A	Molecular mimicry between Anoctamin 2 and Epstein-Barr virus nuclear antigen 1 associates with multiple sclerosis risk.	Anti-anoctamin 2 antibody levels	11,936 European ancestry individuals	NA	6p21.32	NR	rs2516049-G	NR	7E-15		0.092	[0.065-0.119] unit decrease	Illumina [615763]	N
615	chr6_cox_hap2	4021381	4021382	rs2516049	26819262	Zhou Y	2016-01-27	Mult Scler	Genetic loci for Epstein-Barr virus nuclear antigen-1 are associated with risk of multiple sclerosis.	Epstein Barr virus nuclear antigen 1 IgG levels	1,243 parents and up to 2,356 children from 992 families, 1,956 Mexican American individuals		6p21.32	NR	rs2516049-T		6E-14	(Mexican American)	0.204	unit increase	Illumina [up to 2428201] (imputed)	N
615	chr6_cox_hap2	4021381	4021382	rs2516049	26819262	Zhou Y	2016-01-27	Mult Scler	Genetic loci for Epstein-Barr virus nuclear antigen-1 are associated with risk of multiple sclerosis.	Epstein Barr virus nuclear antigen 1 IgG levels	1,243 parents and up to 2,356 children from 992 families, 1,956 Mexican American individuals		6p21.32	NR	rs2516049-T		4E-9	(non-Mexican American)	0.204	unit increase	Illumina [up to 2428201] (imputed)	N
615	chr6_cox_hap2	4021381	4021382	rs2516049	26819262	Zhou Y	2016-01-27	Mult Scler	Genetic loci for Epstein-Barr virus nuclear antigen-1 are associated with risk of multiple sclerosis.	Epstein Barr virus nuclear antigen 1 IgG levels	1,243 parents and up to 2,356 children from 992 families, 1,956 Mexican American individuals		6p21.32	NR	rs2516049-T		3E-20		0.204	unit increase	Illumina [up to 2428201] (imputed)	N
615	chr6_cox_hap2	4021382	4021383	rs2454138	29521573	Buck D	2018-03-01	Mult Scler	Effect of HLA-DRB1 alleles and genetic variants on the development of neutralizing antibodies to interferon beta in the BEYOND and BENEFIT trials.	Neutralising antibody response to interferon beta therapy in multiple sclerosis (mean antibody levels)	926 European ancestry individuals, 7 Hispanic individuals, 1 Asian ancestry individuals, 1 African ancestry individual, 4 other unknown ancestry individuals, 2 individuals	NA	6p21.32	intergenic	rs2454138-A	0.22	5E-19		0.41	[0.31-0.51] unit increase	Affymetrix [8671751] (imputed)	N
615	chr6_cox_hap2	4021382	4021383	rs2454138	29521573	Buck D	2018-03-01	Mult Scler	Effect of HLA-DRB1 alleles and genetic variants on the development of neutralizing antibodies to interferon beta in the BEYOND and BENEFIT trials.	Neutralising antibody response to interferon beta therapy in multiple sclerosis (maximum antibody levels)	926 European ancestry individuals, 7 Hispanic individuals, 1 Asian ancestry individuals, 1 African ancestry individual, 4 other unknown ancestry individuals, 2 individuals	NA	6p21.32	intergenic	rs2454138-A	0.22	1E-18		0.41	unit increase	Affymetrix [8671751] (imputed)	N
615	chr6_cox_hap2	4021382	4021383	rs2454138	29521573	Buck D	2018-03-01	Mult Scler	Effect of HLA-DRB1 alleles and genetic variants on the development of neutralizing antibodies to interferon beta in the BEYOND and BENEFIT trials.	Neutralising antibody response to interferon beta therapy in multiple sclerosis (area under the curve for the first two years)	926 European ancestry individuals, 7 Hispanic individuals, 1 Asian ancestry individuals, 1 African ancestry individual, 4 other unknown ancestry individuals, 2 individuals	NA	6p21.32	intergenic	rs2454138-A	0.22	8E-19		0.41	[0.31-0.51] unit increase	Affymetrix [8671751] (imputed)	N
615	chr6_cox_hap2	4021398	4021399	rs2647062	32201043	Smeland OB	2020-02-08	Biol Psychiatry	Genome-wide Association Analysis of Parkinson's Disease and Schizophrenia Reveals Shared Genetic Architecture and Identifies Novel Risk Loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	NA	6p21.32	HLA-DRB1	rs2647062-A		6E-12		0.143	[0.1-0.18] unit increase	Illumina [NR]	N
615	chr6_cox_hap2	4021398	4021399	rs2647062	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	148,164 European ancestry individuals	NA	6p21.32	HLA-DRB1	rs2647062-A	0.84	1E-11	(BMI-adjusted)	0.048	[0.034-0.062] unit decrease	Affymetrix, Illumina, Perlegen [10019203] (imputed)	N
615	chr6_cox_hap2	4021551	4021552	rs558721	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD64 on CD14- CD16-	3,622 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs558721-T	0.07623	2E-8		0.3331	[0.22-0.45] unit increase	Illumina [18215199] (imputed)	N
615	chr6_cox_hap2	4021844	4021845	rs556025	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	6p21.32		rs556025-T	0.35263	3E-8		0.039419	[0.025-0.053] unit increase	Affymetrix [15580782] (imputed)	N
615	chr6_cox_hap2	4021944	4021950	rs749637599	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hearing loss, difficulty in hearing	14,654 European ancestry cases, 474,839 European ancestry controls, 3,400 East Asian ancestry cases, 175,326 East Asian ancestry controls	NA	6p21.32		rs749637599-G	NR	3E-12		0.174	[0.13-0.22] unit increase	Affymetrix, Illumina [25845022] (imputed)	N
615	chr6_cox_hap2	4022283	4022284	rs9270878	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	HLA-DRB1	rs9270878-A	NR	9E-10		0.0181825	[0.012-0.024] unit decrease	Affymetrix [321114] (imputed)	N
615	chr6_cox_hap2	4022513	4022514	rs9270891	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs9270891-G	0.159	6E-35	(Ubiquitin carboxyl-terminal hydrolase 25, USP25.9215.117.3)	0.41	[0.35-0.47] unit increase	Affymetrix [10572788] (imputed)	N
615	chr6_cox_hap2	4022645	4022646	rs17425622	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PLXDC2	5,360 Icelandic ancestry individuals	NA	6p21.32		rs17425622-C	0.1783	1E-21		0.224277	[0.18-0.27] unit decrease	Illumina [7506463] (imputed)	N
615	chr6_cox_hap2	4022645	4022646	rs17425622	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Parkinson's disease	9,619 European ancestry cases, 324,522 European ancestry controls	NA	6p21.32	HLA-DQA1, HLA-DRB5	rs17425622-?	NR	4E-17		1.235	[1.174-1.298]	Illumina [12438219] (imputed)	N
615	chr6_cox_hap2	4022788	4022789	rs34102154	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Non-Hodgkin's lymphoma	2,400 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs34102154-G	NR	1E-14		1.431	NR	Affymetrix [7846216] (imputed)	N
615	chr6_cox_hap2	4022884	4022885	rs9270911	33558538	Gebresilase T	2021-02-08	Sci Rep	Replication of HLA class II locus association with susceptibility to podoconiosis in three Ethiopian ethnic groups.	Podoconiosis	1,137 Ethiopian ancestry cases, 1,152 Ethiopian ancestry controls	NA	6p21.32	intergenic	rs9270911-T	0.44	2E-12				Illumina [2201695]	N
615	chr6_cox_hap2	4022884	4022885	rs9270911	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs9270911-?	NR	1E-27				Affymetrix [~ 8270000] (imputed)	N
615	chr6_cox_hap2	4023855	4023856	rs601006	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	HLA-DRB1	rs601006-A	NR	9E-10		0.0179058	[0.012-0.024] unit increase	Affymetrix [321114] (imputed)	N
615	chr6_cox_hap2	4024089	4024090	rs601945	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	6p21.32	MHC	rs601945-G	0.1775	5E-8		1.06	[1.04-1.08]	Affymetrix, Illumina [~ 27000000] (imputed)	N
615	chr6_cox_hap2	4024145	4024146	rs9270965	24204295	Han F	2013-10-31	PLoS Genet	Genome wide analysis of narcolepsy in China implicates novel immune loci and reveals changes in association prior to versus after the 2009 H1N1 influenza pandemic.	Narcolepsy (onset before 2009 H1N1 influenza pandemic)	up to 893 Chinese ancestry cases with onset before the 2009 H1N1 influenza pandemic, up to 373 Chinese ancestry cases with onset after the 2009 H1N1 influenza pandemic	NA	6p21.32	NR	rs9270965-?	NR	5E-12		1.72	[NR]	Affymetrix [603382]	N
615	chr6_cox_hap2	4024248	4024249	rs9270970	32771030	Tangtanatakul P	2020-08-08	Arthritis Res Ther	Meta-analysis of genome-wide association study identifies FBN2 as a novel locus associated with systemic lupus erythematosus in Thai population.	Systemic lupus erythematosus	487 Thai cases, 1,606 Thai controls	405 Thai cases, 1,590 Thai controls	6p21.32	HLA-DRB1, HLA-DQA1	rs9270970-G	0.42	4E-26		1.8293	[NR]	Illumina [421909] (imputed)	N
615	chr6_cox_hap2	4024302	4024303	rs144123929	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in IDL	115,082 European ancestry individuals	NA	6p21.32		rs144123929-C	0.971917	1E-8		0.0862226	[0.057-0.116] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4024303	4024304	rs602875	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DRB1	rs602875-G	NR	1E-8		0.0188152	[0.012-0.025] unit decrease	Affymetrix [319769] (imputed)	N
615	chr6_cox_hap2	4024303	4024304	rs602875	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DRB1	rs602875-G	NR	3E-8		0.0183289	[0.012-0.025] unit decrease	Affymetrix [319769] (imputed)	N
615	chr6_cox_hap2	4024303	4024304	rs602875	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DRB1	rs602875-G	NR	4E-9		0.0196908	[0.013-0.026] unit decrease	Affymetrix [321169] (imputed)	N
615	chr6_cox_hap2	4024303	4024304	rs602875	20018961	Zhang FR	2009-12-16	N Engl J Med	Genomewide association study of leprosy.	Leprosy	706 Han Chinese ancestry cases, 1,225 Han Chinese ancestry controls	3,254 Chinese ancestry cases, 5,955 Chinese ancestry controls	6p21.32	HLA-DR-DQ	rs602875-A	0.68	5E-27		1.61	[1.39-1.61]	Illumina [491883]	N
615	chr6_cox_hap2	4024591	4024592	rs2647071	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DRB1	rs2647071-T	NR	2E-8		0.0181138	[0.012-0.024] unit increase	Affymetrix [321169] (imputed)	N
615	chr6_cox_hap2	4024673	4024674	rs9270984	23273568	Yang W	2012-12-27	Am J Hum Genet	Meta-analysis followed by replication identifies loci in or near CDKN1B, TET3, CD80, DRAM1, and ARID5B as associated with systemic lupus erythematosus in Asians.	Systemic lupus erythematosus	1,656 Han Chinese ancestry cases, 3,394 Han Chinese ancestry controls	3,256 Han Chinese ancestry cases, 5,667 Han Chinese ancestry controls, 453 Thai ancestry cases, 963 Thai ancestry controls	6p21.32	HLA-DRB1	rs9270984-T	0.18	5E-24		1.73		Illumina [2100739] (imputed)	N
615	chr6_cox_hap2	4024742	4024743	rs9270986	25643325	Renton AE	2015-04-01	JAMA Neurol	A genome-wide association study of myasthenia gravis.	Myasthenia gravis	972 European ancestry cases, 1,977 European ancestry controls	423 European ancestry cases, 467 European ancestry controls	6p21.32	HLA-DRB1, HLA-DQA1	rs9270986-A	0.15	6E-8		1.43	[NR]	Illumina [8114394] (imputed)	N
615	chr6_cox_hap2	4024853	4024854	rs615672	33736632	Zeng Z	2021-03-18	BMC Med Genomics	Genome-wide association study identifies new loci associated with risk of HBV infection and disease progression.	Persistent hepatitis B virus infection	587 Chinese ancestry persistent cases, 275 Chinese ancestry clearance controls	NA	6p21.32	HLA-DRB1	rs615672-G	0.5276	9E-7		0.5697	NR	Affymetrix [607153]	N
615	chr6_cox_hap2	4024853	4024854	rs615672	33736632	Zeng Z	2021-03-18	BMC Med Genomics	Genome-wide association study identifies new loci associated with risk of HBV infection and disease progression.	Hepatitis B	460 Chinese ancestry cases, 169 Chinese ancestry controls	NA	6p21.32	HLA-DRB1	rs615672-?	NR	1E-6				Affymetrix [607153]	N
615	chr6_cox_hap2	4024853	4024854	rs615672	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.32	HLA-DRB1	rs615672-G	0.6531	2E-8	(EA)	0.0253	[0.016-0.034] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
615	chr6_cox_hap2	4024853	4024854	rs615672	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.32	HLA-DRB1	rs615672-G	0.6427	1E-8		0.0242	[0.016-0.032] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
615	chr6_cox_hap2	4024853	4024854	rs615672	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6p21.32	HLA, DRB1	rs615672-G	0.6531	1E-6	(EA)	0.0244	[0.014-0.034] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
615	chr6_cox_hap2	4024853	4024854	rs615672	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6p21.32	HLA, DRB1	rs615672-G	0.6427	1E-6		0.0235	[0.014-0.033] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
615	chr6_cox_hap2	4024853	4024854	rs615672	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.32	HLA-DRB1	rs615672-?	0.6531	2E-7	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
615	chr6_cox_hap2	4024853	4024854	rs615672	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.32	HLA-DRB1	rs615672-?	0.6427	1E-7				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
615	chr6_cox_hap2	4024853	4024854	rs615672	17554300	Wellcome Trust Case Control Consortium	2007-06-07	Nature	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Rheumatoid arthritis	1,860 European ancestry cases, 2,938 European ancestry controls	NA	6p21.32	HLA-DRB1	rs615672-?	NR	8E-27				Affymetrix [469557]	N
615	chr6_cox_hap2	4025040	4025041	rs2760995	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	6p21.32	NR	rs2760995-?	NR	6E-11				Affymetrix [~ 8270000] (imputed)	N
615	chr6_cox_hap2	4025040	4025041	rs2760995	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals, 6,795 African American individuals, 6,324 East Asian ancestry individuals, 2,335 South Asian ancestry individuals, 1,442 Hispanic individuals	NA	6p21.32	HLA-DRB	rs2760995-A	NR	4E-8		0.014	[0.0091-0.0189] unit decrease	Affymetrix, Illumina [8034757] (imputed)	N
615	chr6_cox_hap2	4025040	4025041	rs2760995	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Microalbuminuria	51,861 European, African American, East Asian, South Asian or Hispanic ancestry cases, 297,093 European, African American, East Asian, South Asian or Hispanic ancestry controls	NA	6p21.32	HLA-DRB	rs2760995-G	NR	3E-7		1.0445645	[1.03-1.06]	Affymetrix, Illumina [8326000] (imputed)	N
615	chr6_cox_hap2	4025042	4025043	rs2647074	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (anti-inflammatory and antirheumatic products, non-steroids)	74,150 European ancestry cases, 90,370 European ancestry controls, 29,694 East Asian ancestry cases, 149,032 East Asian ancestry controls	NA	6p21.32		rs2647074-T	NR	3E-12		0.0772	[0.056-0.099] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
615	chr6_cox_hap2	4025042	4025043	rs2647074	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DRB1	rs2647074-T	NR	1E-8		0.0186096	[0.012-0.025] unit decrease	Affymetrix [323123] (imputed)	N
615	chr6_cox_hap2	4025042	4025043	rs2647074	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Aspartate aminotransferase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	6p21.32	HLA-DRB1, HLA-DQA1	rs2647074-?		1E-13		0.0387	[0.029-0.049] unit decrease	Illumina [31500000] (imputed)	N
615	chr6_cox_hap2	4025042	4025043	rs2647074	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs2647074-T	0.328	1E-34	(Complement C4, C4A.C4B.4481.34.2)	0.32	[0.26-0.38] unit increase	Affymetrix [10572788] (imputed)	N
615	chr6_cox_hap2	4025042	4025043	rs2647074	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Total bilirubin levels	110,207 Japanese ancestry individuals	NA	6p21.32	HLA-DRB1, HLA-DQA1	rs2647074-?	NR	3E-10		0.03828	[0.026-0.05] unit increase novel	Illumina [6108953] (imputed)	N
615	chr6_cox_hap2	4025240	4025241	rs539705259	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on CD33dim HLA DR+ CD11b+	1,634 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs539705259-G	0.03706	4E-12		0.8225	[0.59-1.05] unit increase	Illumina [16998734] (imputed)	N
615	chr6_cox_hap2	4025288	4025289	rs113315602	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	6p21.32	HLA-DRB1	rs113315602-A	0.9027	9E-12		0.003	[0.002-0.004] unit increase	Affymetrix [15275733] (imputed)	N
615	chr6_cox_hap2	4025576	4025577	rs7760841	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	6p21.32	HLA-DQA1, HLA-DQB1, HLA-DRA, HLA-DRB1, HLA-DRB5, HLA-DRB6	rs7760841-T	0.176847	1E-12		1.1059403	[1.08-1.13]	Affymetrix [8274727] (imputed)	N
615	chr6_cox_hap2	4025664	4025665	rs145945003	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Yeast infection	52,218 European ancestry cases, 10,235 European ancestry controls	NA	6p21.32	NR	rs145945003-?	NR	1E-7		0.0858	[0.054-0.117] unit decrease	Illumina [at least 560000] (imputed)	N
615	chr6_cox_hap2	4025698	4025699	rs9271025	34532061	Hodel F	2021-06-11	Virus Evol	Human genomics of the humoral immune response against polyomaviruses.	Anti-JC polyomavirus IgG seropositivity	8,567 European ancestry antibody-positive cases cases, up to 6,836 European ancestry antibody-negative controls	NA	6p21.32		rs9271025-?	NR	4E-46				Affymetrix [NR] (imputed)	N
615	chr6_cox_hap2	4025807	4025808	rs7761182	27864402	Harris SE	2017-06-01	Int J Epidemiol	Molecular genetic contributions to self-rated health.	Self-rated health	111,749 British ancestry individuals	NA	6p21.32	HLA	rs7761182-?	NR	2E-9		0.03	[NR] unit increase	Affymetrix [~ 17300000] (imputed)	N
615	chr6_cox_hap2	4025926	4025927	rs13193738	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Strep throat	52,487 European ancestry cases, 22,017 European ancestry controls	NA	6p21.32	NR	rs13193738-?	NR	1E-7		0.0467	[0.029-0.064] unit increase	Illumina [at least 560000] (imputed)	N
615	chr6_cox_hap2	4026141	4026142	rs113742050	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DRB1	rs113742050-T	NR	4E-12		0.0348298	[0.025-0.045] unit increase	Affymetrix [319769] (imputed)	N
615	chr6_cox_hap2	4026141	4026142	rs113742050	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DRB1	rs113742050-T	NR	2E-12		0.0353099	[0.025-0.045] unit increase	Affymetrix [319769] (imputed)	N
615	chr6_cox_hap2	4026222	4026223	rs9271060	26891255	Jung ES	2016-02-18	Inflamm Bowel Dis	HLA-C*01 is a Risk Factor for Crohn's Disease.	Crohn's disease	275 Korean ancestry cases, 2,369 Korean ancestry controls	242 Korean ancestry cases, 1,066 Korean ancestry controls	6p21.32	HLA-DQA1, HLA-DRB1	rs9271060-G	0.77	1E-22		2.857143	[2.33-3.57]	Affymetrix [3387207] (imputed)	N
615	chr6_cox_hap2	4026233	4026234	rs4713555	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs4713555-?	NR	7E-13				Affymetrix [~ 8270000] (imputed)	N
615	chr6_cox_hap2	4026233	4026234	rs4713555	26482879	Paternoster L	2015-10-19	Nat Genet	Multi-ancestry genome-wide association study of 21,000 cases and 95,000 controls identifies new risk loci for atopic dermatitis.	Atopic dermatitis	18,900 European ancestry cases, 1,472 Japanese ancestry cases, 422 African American cases, 300 Latino cases, 305 cases, 84,166 European ancestry controls, 7,966 Japanese ancestry controls, 844 African American controls, 1,592 Latino controls, 896 controls	30,588 European ancestry cases, 459 African American cases, 1,012 Chinese ancestry cases, 226,537 European ancestry controls, 729 African American controls, 1,362 Chinese ancestry controls	6p21.32	HLA-DRB1, HLA-DQA1	rs4713555-G	0.73	5E-9	(EA, fixed effects)	1.098901		Illumina [15539996] (imputed)	N
615	chr6_cox_hap2	4026340	4026341	rs9271066	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	683 Turkish ancestry cases, 1,721 Turkish ancestry controls	NA	6p21.32	HLA-DRB1	rs9271066-?	NR	2E-11	(conditional on rs2844678, rs9262437, rs61444472 and rs17193507)			Illumina [4495750] (imputed)	N
615	chr6_cox_hap2	4026367	4026368	rs3021304	25108386	Hou S	2014-08-10	Nat Genet	Genome-wide association analysis of Vogt-Koyanagi-Harada syndrome identifies two new susceptibility loci at 1p31.2 and 10q21.3.	Vogt-Koyanagi-Harada syndrome	774 Han Chinese ancestry cases, 2,009 Han Chinese ancestry controls	764 Han Chinese ancestry cases, 3594 Han Chinese ancestry controls	6p21.32	HLA-DRB1, HLA-DQA1	rs3021304-G	0.346	1E-118		2.97	[2.71-3.26]	Affymetrix, Illumina [2208258] (imputed)	N
615	chr6_cox_hap2	4026444	4026445	rs9461776	25030430	Zignego AL	2014-07-17	Genes Immun	Genome-wide association study of hepatitis C virus- and cryoglobulin-related vasculitis.	Mixed cryoglobulinemia vasculitis in chronic hepatitis C infection	356 European ancestry cases, 447 European ancestry controls	92 European ancestry cases, 179 European ancestry controls	6p21.32	HLA-DQA1, HLA-DRB1	rs9461776-G	0.29	7E-9		2.02	[NR]	Illumina [899641]	N
615	chr6_cox_hap2	4026692	4026693	rs12660719	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs12660719-A	0.961474	2E-15		0.0823824	[0.062-0.103] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4026795	4026796	rs9271082	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	IgA nephropathy	1,180 East Asian ancestry cases, 899 East Asian ancestry controls	NA			rs9271082-C	NR	8E-9		0.466252	[0.31-0.62] unit increase	Illumina [NR] (imputed)	N
615	chr6_cox_hap2	4027185	4027186	rs9271100	25642632	Liu H	2015-02-02	Nat Genet	Discovery of six new susceptibility loci and analysis of pleiotropic effects in leprosy.	Leprosy	1,548 Chinese ancestry cases, 2,150 Chinese ancestry controls, 4,362 Chinese ancestry controls with immune-related diseases	6,765 Chinese ancestry cases, 9,505 Chinese ancestry controls	6p21.32	HLA-DR-DQ	rs9271100-T	0.217	8E-95		1.68	[NR]	Illumina [4577171] (imputed)	N
615	chr6_cox_hap2	4027185	4027186	rs9271100	19838193	Han JW	2009-10-18	Nat Genet	Genome-wide association study in a Chinese Han population identifies nine new susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	1,047 Han Chinese ancestry cases, 1,205 Han Chinese ancestry controls	3,152 Han Chinese ancestry cases, 7,050 Han Chinese ancestry controls	6p21.32	HLA-DRB1	rs9271100-?	NR	1E-12		1.9	[1.59-2.27]	Illumina [493955]	N
615	chr6_cox_hap2	4027502	4027503	rs9271117	24204295	Han F	2013-10-31	PLoS Genet	Genome wide analysis of narcolepsy in China implicates novel immune loci and reveals changes in association prior to versus after the 2009 H1N1 influenza pandemic.	Narcolepsy (onset before 2009 H1N1 influenza pandemic)	up to 893 Chinese ancestry cases with onset before the 2009 H1N1 influenza pandemic, up to 373 Chinese ancestry cases with onset after the 2009 H1N1 influenza pandemic	NA	6p21.32	NR	rs9271117-?	NR	6E-14		1.75	[NR]	Affymetrix [603382]	N
615	chr6_cox_hap2	4028085	4028086	rs660895	33517400	Ahluwalia TS	2021-01-30	Hum Mol Genet	Genome-Wide Association Study of Circulating Interleukin 6 Levels Identifies Novel Loci.	Interleukin-6 levels	52,654 European ancestry individuals	14,774 European ancestry individuals	6p21.32	HLADRB1, HLADQA1	rs660895-G	0.186447	2E-10		0.035794	[0.024-0.047] unit increase	Affymetrix, Illumina, Perlegen [2454025] (imputed)	N
615	chr6_cox_hap2	4028085	4028086	rs660895	32912934	Li M	2020-09-10	J Am Soc Nephrol	Genome-Wide Meta-Analysis Identifies Three Novel Susceptibility Loci and Reveals Ethnic Heterogeneity of Genetic Susceptibility for IgA Nephropathy.	IgA nephropathy	2,628 Chinese ancestry cases, 11,563 Chinese ancestry controls	6,879 Han Chinese ancestry cases, 9,019 Han Chinese ancestry controls, 1,039 Italian ancestry cases, 1,289 Italian ancestry controls	6p21.32	DQB1.DRB1	rs660895-G	0.2533255867854363	1E-14	(East Asian)	1.3539767	[1.25335647918749-1.46267487262285]	NR [3611808] (imputed)	N
615	chr6_cox_hap2	4028085	4028086	rs660895	26028593	Li M	2015-06-01	Nat Commun	Identification of new susceptibility loci for IgA nephropathy in Han Chinese.	IgA nephropathy	1,434 Han Chinese ancestry cases, 10,661 Han Chinese ancestry controls	6,879 Han Chinese ancestry cases, 9,019 Han Chinese ancestry controls	6p21.32	NR	rs660895-G	0.259	1E-10		1.289	[1.184-1.402]	Illumina [3792949] (imputed)	N
615	chr6_cox_hap2	4028085	4028086	rs660895	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis (ACPA-positive)	up to 9,585 European ancestry cases, up to 33,742 European ancestry controls	NA	6p21.32	HLA	rs660895-G	NR	1E-300		3.0299		Illumina [129464] (imputed)	N
615	chr6_cox_hap2	4028085	4028086	rs660895	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis (ACPA-negative)	3,297 European ancestry cases, 15,870 European ancestry controls	NA	6p21.32	HLA	rs660895-G	NR	2E-8		1.2083		Illumina [129464]	N
615	chr6_cox_hap2	4028085	4028086	rs660895	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis	up to 13,838 European ancestry cases, up to 33,742 European ancestry controls	NA	6p21.32	HLA	rs660895-G	NR	1E-300		2.265		Illumina [129464] (imputed)	N
615	chr6_cox_hap2	4028085	4028086	rs660895	22197929	Yu XQ	2011-12-25	Nat Genet	A genome-wide association study in Han Chinese identifies multiple susceptibility loci for IgA nephropathy.	IgA nephropathy	1,434 Han Chinese ancestry cases, 4,270 Han Chinese ancestry controls	2,703 Han Chinese ancestry cases, 3,464 Han Chinese ancestry controls	6p21.32	HLA-DRB1	rs660895-G	0.24	4E-20		1.34	[1.26-1.42]	Illumina [444882]	N
615	chr6_cox_hap2	4028085	4028086	rs660895	17804836	Plenge RM	2007-09-05	N Engl J Med	TRAF1-C5 as a risk locus for rheumatoid arthritis--a genomewide study.	Rheumatoid arthritis	1,522 European ancestry cases, 1,850 European ancestry controls	1,053 European ancestry cases, 1,858 European ancestry controls	6p21.32	HLA-DRB1	rs660895-?	0.21	1E-108		3.62	[NR]	Illumina [297086]	N
615	chr6_cox_hap2	4028092	4028093	rs36022506	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.32	Intergenic	rs36022506-?		2E-6		1.06	[1.03-1.08]	Illumina [7645193] (imputed)	N
615	chr6_cox_hap2	4028338	4028339	rs535777	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)(bidirectional)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs535777-G	NR	4E-12				Affymetrix [7846216] (imputed)	N
615	chr6_cox_hap2	4028338	4028339	rs535777	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Help-seeking from a psychiatrist	36,286 British ancestry cases, 297,126 British ancestry controls	NA	6p21.32	NR	rs535777-G	0.862	1E-9		1.0752687	NR	NR [5276842] (imputed)	N
615	chr6_cox_hap2	4028338	4028339	rs535777	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Help-seeking from a GP	113,262 British ancestry cases, 219,360 British ancestry controls	NA	6p21.32	NR	rs535777-?	NR	5E-6		1.0362694	[1.02-1.05]	NR [5276842] (imputed)	N
615	chr6_cox_hap2	4028593	4028594	rs9271170	31766143	Ortega-Azorin C	2019-11-13	Nutrients	Candidate Gene and Genome-Wide Association Studies for Circulating Leptin Levels Reveal Population and Sex-Specific Associations in High Cardiovascular Risk Mediterranean Subjects.	Circulating leptin levels in high cardiovascular risk	351 Spanish mediterranean ancestry men, 615 Spanish mediterranean ancestry women	NA	6p21.32	intergenic	rs9271170-?	0.24	8E-6	(model 2)	0.161	NR unit increase	Illumina [628376]	N
615	chr6_cox_hap2	4028786	4028787	rs674313	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	6p21.32	NR	rs674313-?	NR	2E-10	(MIC-A)	0.503744	[0.35-0.66] unit increase	Illumina [11901634] (imputed)	N
615	chr6_cox_hap2	4028786	4028787	rs674313	21131588	Slager SL	2010-12-03	Blood	Genome-wide association study identifies a novel susceptibility locus at 6p21.3 among familial CLL.	Chronic lymphocytic leukemia	407 European ancestry cases, 296 European ancestry controls	252 European ancestry cases, 965 European ancestry controls	6p21.32	HLA-DRB5	rs674313-T	0.26	7E-9		1.69	[1.41-2.01]	Affymetrix [827777]	N
615	chr6_cox_hap2	4028831	4028832	rs9271176	28165464	Law PJ	2017-02-06	Nat Commun	Genome-wide association analysis implicates dysregulation of immunity genes in chronic lymphocytic leukaemia.	Chronic lymphocytic leukemia	4,478 European ancestry cases and 13,213 European ancestry controls.	1,722 European ancestry cases and 4,385 European ancestry controls.	6p21.32	HLA	rs9271176-G	NR	3E-20		1.29	[1.22-1.36]	Affymetrix, Illumina [> 10000000] (imputed)	N
615	chr6_cox_hap2	4028982	4028983	rs2858863	31235810	Fung K	2019-06-24	Sci Rep	Genome-wide association study identifies loci for arterial stiffness index in 127,121 UK Biobank participants.	Arterial stiffness index	127,121 European ancestry individuals	NA	6p21.32	HLA-DRB1	rs2858863-C	0.796	5E-6		0.023	[0.013-0.033] unit increase	Affymetrix [~ 10446505] (imputed)	N
615	chr6_cox_hap2	4029234	4029235	rs9271192	31473137	Moreno-Grau S	2019-08-13	Alzheimers Dement	Genome-wide association analysis of dementia and its clinical endophenotypes reveal novel loci associated with Alzheimer's disease and three causality networks: The GR@ACE project.	Alzheimer's disease	4,120 Spanish ancestry cases, 17,008 cases, 3,289 Spanish ancestry controls, 37,154 controls	1,943 Spanish ancestry cases, 8,572 cases, 3,016 Spanish ancestry controls, 11,312 controls	6p21.32	HLA-DRB5	rs9271192-?	NR	5E-7		1.09	[1.13-1.05]	Affymetrix [up to 7055881] (imputed)	N
615	chr6_cox_hap2	4029234	4029235	rs9271192	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	6p21.32	HLA-DRB5, HLA-DRB1	rs9271192-C	0.2751	4E-8		5.49	NR z-unit increase	Affymetrix, Illumina [up to 10847151] (imputed)	N
615	chr6_cox_hap2	4029234	4029235	rs9271192	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease (late onset)	24,087 European ancestry cases, 55,058 European ancestry controls	NA	6p21.32	HLA-DRB5, HLA-DRB1	rs9271192-C	NR	5E-7		5.02	NR z-score increase	Illumina [up to 9862738] (imputed)	N
615	chr6_cox_hap2	4029234	4029235	rs9271192	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	6p21.32	NR	rs9271192-?	NR	7E-10		1.0530598		Affymetrix [7795605] (imputed)	N
615	chr6_cox_hap2	4029234	4029235	rs9271192	24162737	Lambert JC	2013-10-27	Nat Genet	Meta-analysis of 74,046 individuals identifies 11 new susceptibility loci for Alzheimer's disease.	Alzheimer's disease (late onset)	17,008 European ancestry cases, 37,154 European ancestry controls	8,572 European ancestry cases, 11,312 European ancestry controls	6p21.32	HLA-DRB5, HLA-DRB1	rs9271192-C	0.276	3E-12		1.11	[1.08-1.18]	Illumina [7055881] (imputed)	N
615	chr6_cox_hap2	4029294	4029295	rs3997868	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.32	NR	rs3997868-?	NR	1E-13				Affymetrix [~ 8270000] (imputed)	N
615	chr6_cox_hap2	4029337	4029338	rs5021727	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs5021727-A	0.540791	2E-9		0.0240273	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4029337	4029338	rs5021727	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs5021727-A	0.540791	4E-8		0.0219961	[0.014-0.03] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4029337	4029338	rs5021727	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs5021727-A	0.540791	1E-8		0.0228075	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4029337	4029338	rs5021727	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	6p21.32		rs5021727-?	NR	3E-9		0.00542275	[0.0036-0.0072] unit decrease	NR [NR]	N
615	chr6_cox_hap2	4029337	4029338	rs5021727	31589552	Lind L	2019-10-07	Metab Syndr Relat Disord	Genome-Wide Association Study of the Metabolic Syndrome in UK Biobank.	Metabolic syndrome	291,107 European ancestry individuals	NA	6p21.32	HLA-DRB1	rs5021727-G	0.461566	2E-8		0.0371336	[0.024-0.05] unit increase	Affymetrix [9463307] (imputed)	N
615	chr6_cox_hap2	4029739	4029740	rs9271209	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	6p21.32	NR	rs9271209-?	NR	2E-85	(EA)			Affymetrix, Illumina [~ 9000000] (imputed)	N
615	chr6_cox_hap2	4029992	4029993	rs9271215	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Gynecologic disease (multivariate analysis)	up to 7,975 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.32	Intergenic	rs9271215-?		2E-8	(uterine fibroid, uterine cervical cancer)			Illumina [7645193] (imputed)	N
615	chr6_cox_hap2	4030339	4030340	rs28752509	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs28752509-C	0.542361	3E-18		0.0343946	[0.027-0.042] unit increase	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4030339	4030340	rs28752509	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs28752509-C	0.542361	1E-17		0.0336941	[0.026-0.041] unit increase	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4030342	4030343	rs28752510	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs28752510-G	0.542559	5E-23		0.0388531	[0.031-0.047] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4030342	4030343	rs28752510	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6p21.32		rs28752510-G	0.542559	2E-17		0.033878	[0.026-0.042] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4030342	4030343	rs28752510	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	6p21.32		rs28752510-G	0.542559	5E-9		0.0230374	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4030342	4030343	rs28752510	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	6p21.32		rs28752510-G	0.542559	3E-13		0.0296091	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4030342	4030343	rs28752510	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	6p21.32		rs28752510-G	0.542559	3E-13		0.0294341	[0.022-0.037] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4030342	4030343	rs28752510	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	6p21.32		rs28752510-G	0.542559	4E-17		0.0335623	[0.026-0.041] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4030342	4030343	rs28752510	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs28752510-G	0.542559	4E-14		0.0312145	[0.023-0.039] unit increase	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4030342	4030343	rs28752510	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	6p21.32		rs28752510-G	0.542559	5E-10		0.0257222	[0.018-0.034] unit increase	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4030342	4030343	rs28752510	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs28752510-G	0.542559	1E-19		0.035402	[0.028-0.043] unit increase	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4030342	4030343	rs28752510	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	6p21.32		rs28752510-G	0.542559	2E-9		0.0240001	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4030342	4030343	rs28752510	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	6p21.32		rs28752510-G	0.542559	3E-14		0.030005	[0.022-0.038] unit increase	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4030342	4030343	rs28752510	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs28752510-G	0.542559	2E-20		0.0362502	[0.029-0.044] unit increase	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4030342	4030343	rs28752510	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	6p21.32		rs28752510-G	0.542559	2E-11		0.027339	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4030342	4030343	rs28752510	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	6p21.32		rs28752510-G	0.542559	2E-15		0.0309552	[0.023-0.039] unit increase	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4030387	4030388	rs13191975	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs13191975-T	NR	4E-12		0.0198638	[0.014-0.025] unit increase	Affymetrix [321169] (imputed)	N
615	chr6_cox_hap2	4031221	4031222	rs9368730	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	6p21.32	HLA-DRB1, HLA-DQA1	rs9368730-G	0.876	2E-8		1.403	[0.74-2.07] ml/min/1.73m2 decrease	Affymetrix, Illumina [at least 5248638] (imputed)	N
615	chr6_cox_hap2	4032223	4032224	rs9271296	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR++ monocyte %monocyte	3,595 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9271296-G	0.55558	4E-23		0.3033	[0.24-0.36] unit decrease	Illumina [18380843] (imputed)	N
615	chr6_cox_hap2	4032405	4032406	rs1966002	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs1966002-T	0.454	8E-31		1.337	[1.29-1.39]	Illumina [11270530] (imputed)	N
615	chr6_cox_hap2	4032461	4032463	rs776111176	30552067	Shrine N	2018-12-11	Lancet Respir Med	Moderate-to-severe asthma in individuals of European ancestry: a genome-wide association study.	Asthma (moderate or severe)	5,135 European ancestry cases, 25,675 European ancestry controls	5,414 European ancestry cases, 21,471 European ancestry controls	6p21.32	HLA-DQA1	rs776111176-A	0.1485	3E-16		1.1904762	[1.14-1.23]	Affymetrix [33771858] (imputed)	N
615	chr6_cox_hap2	4032611	4032612	rs4530903	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6p21.32		rs4530903-?	NR	9E-20		1.15592	[1.12-1.19]	NR [685523]	N
615	chr6_cox_hap2	4032611	4032612	rs4530903	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs4530903-T	0.19	2E-8		4.08	[3.13-5.32]	Illumina [NR] (imputed)	N
615	chr6_cox_hap2	4032611	4032612	rs4530903	23349640	Vijai J	2013-01-17	PLoS Genet	Susceptibility loci associated with specific and shared subtypes of lymphoid malignancies.	Lymphoma	275 Follicular non-Hodgkin's Lymphoma cases, 269 diffuse large B-cell non-Hodgkin's Lymphoma cases, 198 other non-Hodgkin's Lymphoma cases, 202 Hodgkin's Lymphoma cases, 4,044 controls	202 European ancestry Follicular non-Hodgkin's Lymphoma cases, 367 European ancestry diffuse large B-cell non-Hodgkin's Lymphoma cases, 577 European ancestry other non-Hodgkin's Lymphoma cases, 99 European ancestry Hodgkin's Lymphoma cases, 2,596 European ancestry controls	6p21.32	HLA-DRB5, HLA-DQA1	rs4530903-T	NR	3E-6	(LYM)	1.29	[1.16-1.43]	Affymetrix [530583]	N
615	chr6_cox_hap2	4032611	4032612	rs4530903	23349640	Vijai J	2013-01-17	PLoS Genet	Susceptibility loci associated with specific and shared subtypes of lymphoid malignancies.	Lymphoma	275 Follicular non-Hodgkin's Lymphoma cases, 269 diffuse large B-cell non-Hodgkin's Lymphoma cases, 198 other non-Hodgkin's Lymphoma cases, 202 Hodgkin's Lymphoma cases, 4,044 controls	202 European ancestry Follicular non-Hodgkin's Lymphoma cases, 367 European ancestry diffuse large B-cell non-Hodgkin's Lymphoma cases, 577 European ancestry other non-Hodgkin's Lymphoma cases, 99 European ancestry Hodgkin's Lymphoma cases, 2,596 European ancestry controls	6p21.32	HLA-DRB5, HLA-DQA1	rs4530903-T	NR	3E-12	(FL)	1.93	[NR]	Affymetrix [530583]	N
615	chr6_cox_hap2	4032611	4032612	rs4530903	23349640	Vijai J	2013-01-17	PLoS Genet	Susceptibility loci associated with specific and shared subtypes of lymphoid malignancies.	Lymphoma	275 Follicular non-Hodgkin's Lymphoma cases, 269 diffuse large B-cell non-Hodgkin's Lymphoma cases, 198 other non-Hodgkin's Lymphoma cases, 202 Hodgkin's Lymphoma cases, 4,044 controls	202 European ancestry Follicular non-Hodgkin's Lymphoma cases, 367 European ancestry diffuse large B-cell non-Hodgkin's Lymphoma cases, 577 European ancestry other non-Hodgkin's Lymphoma cases, 99 European ancestry Hodgkin's Lymphoma cases, 2,596 European ancestry controls	6p21.32	HLA-DRB5, HLA-DQA1	rs4530903-T	NR	2E-8	(NHL)	1.37	[1.23-1.54]	Affymetrix [530583]	N
615	chr6_cox_hap2	4032611	4032612	rs4530903	23212062	Fanous AH	2012-12-01	Am J Psychiatry	Genome-wide association study of clinical dimensions of schizophrenia: polygenic effect on disorganized symptoms.	Schizophrenia	2,454 European ancestry cases	NA	6p21.32	HLA-DRB1, HLA-DQA1	rs4530903-?	NR	5E-6	(Negative/disorganized symptoms)	0.0919	[NR] unit increase	Affymetrix [696491]	N
615	chr6_cox_hap2	4032644	4032645	rs522308	29521573	Buck D	2018-03-01	Mult Scler	Effect of HLA-DRB1 alleles and genetic variants on the development of neutralizing antibodies to interferon beta in the BEYOND and BENEFIT trials.	Neutralising antibody response to interferon beta therapy in multiple sclerosis (presence of antibodies)	361 European, Hispanic, Asian, African or unknown ancestry cases, 580 European, Hispanic, Asian, African or unknown ancestry controls	NA	6p21.32	intergenic	rs522308-T	0.25	2E-15		2.6	[2.05-3.29]	Affymetrix [8671751] (imputed)	N
615	chr6_cox_hap2	4033203	4033204	rs9271324	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	Composite immunoglobulin trait (IgA x IgG x IgM)	14,183 Icelandic ancestry individuals	2,146 Swedish ancestry individuals	6p21.32	HLA-DQA1	rs9271324-G	0.2804	4E-19		0.11	NR SD units decrease	Illumina [21568490] (imputed)	N
615	chr6_cox_hap2	4033234	4033235	rs9271325	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	6p21.32		rs9271325-?	NR	2E-8		0.00512579	[0.0033-0.0069] unit increase	NR [NR]	N
615	chr6_cox_hap2	4033322	4033323	rs34656207	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	6p21.32		rs34656207-T	NR	1E-126		0.0477	[0.044-0.052] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
615	chr6_cox_hap2	4033322	4033323	rs34656207	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	6p21.32	HLA-DRB1, HLA-DQA1	rs34656207-T	0.36	1E-111		22.4	z-score increase	Affymetrix [4314223] (imputed)	N
615	chr6_cox_hap2	4033333	4033334	rs3104414	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DQA1	rs3104414-A	NR	9E-13		0.0232695	[0.017-0.03] unit decrease	Affymetrix [323123] (imputed)	N
615	chr6_cox_hap2	4033333	4033334	rs3104414	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR+ T cell%T cell	3,596 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs3104414-A	0.35131	9E-9		0.1693	[0.11-0.23] unit increase	Illumina [18380873] (imputed)	N
615	chr6_cox_hap2	4033333	4033334	rs3104414	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Chronic sinus infection	5,291 European ancestry cases, 79,622 European ancestry controls	NA	6p21.32	NR	rs3104414-?	NR	2E-6		0.104	[0.061-0.147] unit decrease	Illumina [at least 560000] (imputed)	N
615	chr6_cox_hap2	4033371	4033372	rs3104413	26272072	Jiang X	2015-08-13	Rheumatology (Oxford)	An Immunochip-based interaction study of contrasting interaction effects with smoking in ACPA-positive versus ACPA-negative rheumatoid arthritis.	ACPA-positive rheumatoid arthritis (smoking interaction)	340 European ancestry never-smoker cases, 493 European ancestry ever-smoker cases, 746 European ancestry never-smoker controls, 994 European ancestry ever-smoker controls	187 European ancestry never-smoker cases, 421 European ancestry ever-smoker cases, 461 European ancestry never-smoker controls, 447 European ancestry ever-smoker controls	6p21.32	NR	rs3104413-?	NR	2E-10	(adjusted for HLA shared epitope)	1.7857143	[1.35-2.56]	Illumina [133648] (imputed)	N
615	chr6_cox_hap2	4033371	4033372	rs3104413	25014791	Govind N	2014-08-14	Mol Med	Immunochip identifies novel, and replicates known, genetic risk loci for rheumatoid arthritis in black South Africans.	Rheumatoid arthritis	263 South African Black cases and 374 South African Black controls	NA	6p21.32	HLA-DRB1	rs3104413-?	NR	5E-21		3.88		Illumina [103770]	N
615	chr6_cox_hap2	4033618	4033619	rs117356394	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PRSS8	5,356 Icelandic ancestry individuals	NA	6p21.32		rs117356394-G	0.01954	5E-13		0.472302	[0.34-0.6] unit increase	Illumina [7506463] (imputed)	N
615	chr6_cox_hap2	4033618	4033619	rs117356394	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein BAGE3	5,360 Icelandic ancestry individuals	NA	6p21.32		rs117356394-G	0.01954	5E-13		0.48146	[0.35-0.61] unit increase	Illumina [7506463] (imputed)	N
615	chr6_cox_hap2	4033725	4033726	rs6917212	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on CD33dim HLA DR+ CD11b-	1,635 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs6917212-G	0.76363	2E-23		0.4456	[0.36-0.53] unit decrease	Illumina [16999305] (imputed)	N
615	chr6_cox_hap2	4033725	4033726	rs6917212	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on CD33dim HLA DR+ CD11b+	1,634 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs6917212-G	0.23621	2E-26		0.4813	[0.39-0.57] unit decrease	Illumina [16998734] (imputed)	N
615	chr6_cox_hap2	4033725	4033726	rs6917212	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on CD14- CD16+ monocyte	3,621 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs6917212-G	0.77661	1E-48		0.476	[0.41-0.54] unit decrease	Illumina [18212658] (imputed)	N
615	chr6_cox_hap2	4033725	4033726	rs6917212	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on CD14+ CD16+ monocyte	3,618 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs6917212-G	0.77656	4E-58		0.5221	[0.46-0.58] unit decrease	Illumina [18213821] (imputed)	N
615	chr6_cox_hap2	4033766	4033767	rs3129754	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs3129754-G	NR	8E-13		0.020445	[0.015-0.026] unit increase	Affymetrix [319769] (imputed)	N
615	chr6_cox_hap2	4033766	4033767	rs3129754	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs3129754-G	NR	2E-12		0.0200088	[0.014-0.026] unit increase	Affymetrix [319769] (imputed)	N
615	chr6_cox_hap2	4033777	4033778	rs3129755	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs3129755-A	0.434675	3E-21		0.0380258	[0.03-0.046] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4033777	4033778	rs3129755	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	6p21.32		rs3129755-A	0.434675	1E-20		0.037327	[0.029-0.045] unit increase	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4033777	4033778	rs3129755	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	6p21.32		rs3129755-A	0.434675	2E-23		0.0397462	[0.032-0.048] unit increase	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4033879	4033880	rs4959106	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Interleukin-6 levels	21,758 European ancestry individuals	9,173 individuals	6p21.32		rs4959106-T	0.54	7E-13		0.0741	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
615	chr6_cox_hap2	4033994	4033995	rs13208697	34785669	Grosche S	2021-11-16	Nat Commun	Rare variant analysis in eczema identifies exonic variants in DUSP1, NOTCH4 and SLC9A4.	Eczema	20,016 European ancestry cases, 380,433 European ancestry controls	NA	6p21.32		rs13208697-T	0.1461	7E-18		0.86		Affymetrix, Illumina [9397031] (imputed)	N
615	chr6_cox_hap2	4034077	4034078	rs6931277	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Family history of Alzheimer's disease	47,793 European ancestry cases, 328,320 European ancestry controls	NA	6p21.32	HLA-DRB1	rs6931277-T	NR	2E-7		5.22	NR z-score decrease	Affymetrix [10847151] (imputed)	N
615	chr6_cox_hap2	4034077	4034078	rs6931277	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	6p21.32	HLA-DRB1	rs6931277-T	0.153	8E-11		6.49	NR z-unit decrease	Affymetrix, Illumina [up to 10847151] (imputed)	N
615	chr6_cox_hap2	4034077	4034078	rs6931277	26272072	Jiang X	2015-08-13	Rheumatology (Oxford)	An Immunochip-based interaction study of contrasting interaction effects with smoking in ACPA-positive versus ACPA-negative rheumatoid arthritis.	ACPA-positive rheumatoid arthritis (smoking interaction)	340 European ancestry never-smoker cases, 493 European ancestry ever-smoker cases, 746 European ancestry never-smoker controls, 994 European ancestry ever-smoker controls	187 European ancestry never-smoker cases, 421 European ancestry ever-smoker cases, 461 European ancestry never-smoker controls, 447 European ancestry ever-smoker controls	6p21.32	NR	rs6931277-?	NR	2E-10	(adjusted for HLA shared epitope)	1.7857143	[1.35-2.56]	Illumina [133648] (imputed)	N
615	chr6_cox_hap2	4034121	4034122	rs7760731	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p21.32	HLA-DQA1	rs7760731-C	0.642	6E-11		0.087	[0.062-0.112] unit increase	Affymetrix, Illumina [7374092] (imputed)	N
615	chr6_cox_hap2	4034197	4034198	rs28383223	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	6p21.32	HLA-DRB1, HLA-DQA1	rs28383223-T	0.58	7E-38		12.9	z-score increase	Affymetrix [4312306] (imputed)	N
615	chr6_cox_hap2	4034224	4034225	rs114991247	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Growth-regulated protein alpha levels	3,505 Finnish ancestry individuals	NA	6p21.32	NR	rs114991247-C		8E-6		0.2092	[0.12-0.3] SD units increase	NR [10700000] (imputed)	N
615	chr6_cox_hap2	4034373	4034374	rs28383224	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs28383224-A	NR	4E-20		0.0262329	[0.021-0.032] unit decrease	Affymetrix [319769] (imputed)	N
615	chr6_cox_hap2	4034373	4034374	rs28383224	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs28383224-A	NR	1E-19		0.0258764	[0.02-0.031] unit decrease	Affymetrix [319769] (imputed)	N
615	chr6_cox_hap2	4034373	4034374	rs28383224	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs28383224-A	NR	9E-10		0.0176752	[0.012-0.023] unit decrease	Affymetrix [321114] (imputed)	N
615	chr6_cox_hap2	4034373	4034374	rs28383224	29769526	Estrada K	2018-05-16	Nat Commun	A whole-genome sequence study identifies genetic risk factors for neuromyelitis optica.	Neuromyelitis optica (AQP4-IgG-positive)	66 European ancestry cases, 784 European ancestry controls	66 European ancestry cases, 460 European ancestry controls	6p21.32	HLA-DQA1	rs28383224-A	0.42	8E-11		2.66	[1.98-3.56]	Affymetrix [6804788] (imputed)	N
615	chr6_cox_hap2	4034373	4034374	rs28383224	29769526	Estrada K	2018-05-16	Nat Commun	A whole-genome sequence study identifies genetic risk factors for neuromyelitis optica.	Neuromyelitis optica	66 European ancestry AQP4-IgG antibody seropositive cases, 63 European ancestry AQP4-IgG antibody seronegative cases, 784 European ancestry controls	66 European ancestry AQP4-IgG antibody seropositive cases, 20 European ancestry AQP4-IgG antibody seronegative cases, 460 European ancestry controls	6p21.32	HLA-DQA1	rs28383224-A	0.42	6E-12		2.24	[1.78-2.82]	Affymetrix [6804788] (imputed)	N
615	chr6_cox_hap2	4034462	4034463	rs9271348	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein KCNE2	5,364 Icelandic ancestry individuals	NA	6p21.32		rs9271348-G	0.3219	7E-13		0.143439	[0.1-0.18] unit decrease	Illumina [7506463] (imputed)	N
615	chr6_cox_hap2	4034462	4034463	rs9271348	24532677	Bossini-Castillo L	2014-02-14	Ann Rheum Dis	A genome-wide association study of rheumatoid arthritis without antibodies against citrullinated peptides.	Rheumatoid arthritis (ACPA-negative)	1,148 European ancestry cases, 6,008 European ancestry controls	774 European ancestry cases, 1,079 European ancestry controls	6p21.32	HLA-DRB1, HLA-DQA1	rs9271348-?		5E-7		1.2821	[NR]	Illumina [452367]	N
615	chr6_cox_hap2	4034533	4034534	rs1846190	34493870	Wightman DP	2021-09-07	Nat Genet	A genome-wide association study with 1,126,563 individuals identifies new risk loci for Alzheimer's disease.	Late-onset Alzheimer's disease	90,338 cases, 1,036,225 controls	NA	6p21.32		rs1846190-?	NR	3E-14				Illumina [NR] (imputed)	N
615	chr6_cox_hap2	4034600	4034601	rs112430285	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	6p21.32	NR	rs112430285-?	NR	8E-12				Affymetrix [~ 8270000] (imputed)	N
615	chr6_cox_hap2	4034699	4034700	rs33915496	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	89,266 East Asian ancestry individuals	NA	6p21.32	NR	rs33915496-A	0.543315	1E-16		0.039594	[0.03-0.049] SD units increase	Affymetrix, Illumina [16289068] (imputed)	N
615	chr6_cox_hap2	4034713	4034714	rs28383228	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs28383228-A	0.135	4E-18	(Interleukin-21, IL21.7124.18.3)	0.34	[0.26-0.42] unit increase	Affymetrix [10572788] (imputed)	N
615	chr6_cox_hap2	4034713	4034714	rs28383228	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs28383228-A	0.135	3E-35	(Ubiquitin carboxyl-terminal hydrolase 25, USP25.9215.117.3)	0.48	[0.4-0.56] unit increase	Affymetrix [10572788] (imputed)	N
615	chr6_cox_hap2	4034713	4034714	rs28383228	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs28383228-A	0.135	2E-16	(MHC class I polypeptide-related sequence B, MICB.5102.55.3)	0.32	[0.24-0.4] unit increase	Affymetrix [10572788] (imputed)	N
615	chr6_cox_hap2	4034873	4034874	rs28383233	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	6p21.32		rs28383233-G	0.418462	4E-14		0.029595	[0.022-0.037] unit increase	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4034911	4034912	rs34077986	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs34077986-C	NR	5E-11		0.0189538	[0.013-0.025] unit increase	Affymetrix [321169] (imputed)	N
615	chr6_cox_hap2	4035033	4035034	rs33932178	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	95,717 East Asian ancestry individuals	NA	6p21.32		rs33932178-G	0.449956	3E-22		0.0431265	[0.034-0.052] unit decrease	Illumina [13471431] (imputed)	N
615	chr6_cox_hap2	4035039	4035040	rs28383241	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	6p21.32		rs28383241-A	NR	9E-40		0.0249	[0.021-0.029] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
615	chr6_cox_hap2	4035091	4035092	rs34694416	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Basal cell carcinoma	31,787 European ancestry cases, 619,351 European ancestry controls	NA	6p21.32	HLA-DQA1	rs34694416-T	0.116415	8E-23		1.14	[1.11-1.16]	Affymetrix, Illumina [up to 9061544] (imputed)	N
615	chr6_cox_hap2	4035301	4035302	rs73730372	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR++ monocyte %monocyte	3,595 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs73730372-T	0.20013	2E-10		0.2818	[0.2-0.37] unit decrease	Illumina [18380843] (imputed)	N
615	chr6_cox_hap2	4035301	4035302	rs73730372	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs73730372-?	NR	9E-26				Affymetrix [~ 8270000] (imputed)	N
615	chr6_cox_hap2	4035301	4035302	rs73730372	27285765	Chen D	2016-06-07	Oncotarget	Pooled analysis of genome-wide association studies of cervical intraepithelial neoplasia 3 (CIN3) identifies a new susceptibility locus.	Cervical cancer	1,553 Swedish ancestry cervical intraepithelial neoplasia grade 3 cases, 81 Swedish ancestry cervical cancer cases,  4,442 Swedish ancestry controls	827 Swedish ancestry cervical intraepithelial neoplasia grade 3 cases, 123 Swedish ancestry cervical cancer cases, 1,715 European ancestry controls	6p21.32	intergenic	rs73730372-?		3E-19		1.67	[1.49-1.85]	Illumina [5471179]	N
615	chr6_cox_hap2	4035329	4035330	rs3129757	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Cathepsin L1 levels	21,758 European ancestry individuals	9,173 individuals	6p21.32		rs3129757-A	0.15	9E-17		0.0997	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
615	chr6_cox_hap2	4035459	4035460	rs28752520	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs28752520-C	0.227	4E-23	(Complement C4, C4A.C4B.4481.34.2)	0.31	[0.25-0.37] unit increase	Affymetrix [10572788] (imputed)	N
615	chr6_cox_hap2	4035492	4035493	rs28752523	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	6p21.32		rs28752523-C	0.806174	2E-12		0.0353026	[0.025-0.045] unit increase	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4035492	4035493	rs28752523	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to omega-3 fatty acids	115,006 European ancestry individuals	NA	6p21.32		rs28752523-C	0.806174	4E-8		0.0275581	[0.018-0.037] unit increase	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4035492	4035493	rs28752523	33204752	Butler-Laporte G	2020-09-24	Open Forum Infect Dis	Genetic Determinants of Antibody-Mediated Immune Responses to Infectious Diseases Agents: A Genome-Wide and HLA Association Study.	Human herpes virus 6 IE1A antibody levels	6,968 White British ancestry individuals	NA	6p21.32	HLA-DQA1	rs28752523-C	0.806	8E-9		0.12	[0.079-0.161] unit decrease	NR [25472218] (imputed)	N
615	chr6_cox_hap2	4035600	4035601	rs73730377	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FAS	5,367 Icelandic ancestry individuals	NA	6p21.32		rs73730377-G	0.179	9E-13		0.172154	[0.12-0.22] unit increase	Illumina [7506463] (imputed)	N
615	chr6_cox_hap2	4035600	4035601	rs73730377	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.32	NR	rs73730377-?	NR	2E-23				Affymetrix [~ 8270000] (imputed)	N
615	chr6_cox_hap2	4035788	4035789	rs28752534	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	6p21.32		rs28752534-T	0.699585	3E-10		0.0269354	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4035788	4035789	rs28752534	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	6p21.32		rs28752534-T	0.699588	5E-10		0.0255499	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4035788	4035789	rs28752534	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p21.32	HLA-DRB3	rs28752534-T	0.64	2E-30		1.11	[1.1-1.13] unit increase	Illumina [at least 560000] (imputed)	N
615	chr6_cox_hap2	4035992	4035993	rs200675567	31577861	Dai J	2019-10-31	Int J Cancer	Genome-wide association study of INDELs identified four novel susceptibility loci associated with lung cancer risk.	Lung cancer	20,871 European ancestry cases, 15,971 European ancestry controls, 2,331 Chinese ancestry cases, 3,077 Chinese ancestry controls	NA	6p21.32	HLA-DQA1	rs200675567-D	0.11	4E-7		0.9	[0.86-0.96]	Illumina [484196]	N
615	chr6_cox_hap2	4036361	4036362	rs28383254	29903748	Debiec H	2018-06-14	J Am Soc Nephrol	Transethnic, Genome-Wide Analysis Reveals Immune-Related Risk Alleles and Phenotypic Correlates in Pediatric Steroid-Sensitive Nephrotic Syndrome.	Childhood steroid-sensitive nephrotic syndrome	85 Maghrebian cases, 261 Maghrebian controls	NA	6p21.32	HLA-DRB1, HLA-DQA1	rs28383254-?	NR	3E-8		5.7	[3.1-10.6]	Illumina [at least 7529344] (imputed)	N
615	chr6_cox_hap2	4036624	4036625	rs28383264	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs28383264-T	0.201	1E-12	(Hepatocyte nuclear factor 4-alpha, HNF4A.10041.3.3)	0.24	[0.18-0.3] unit increase	Affymetrix [10572788] (imputed)	N
615	chr6_cox_hap2	4036690	4036691	rs3104412	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	6p21.32	NR	rs3104412-?	NR	1E-142	(conditional)			Affymetrix [15688218] (imputed)	N
615	chr6_cox_hap2	4036742	4036743	rs3135005	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	6p21.32	NR	rs3135005-?	NR	2E-9		5.995	NR z score decrease	Illumina [at least 830937] (imputed)	N
615	chr6_cox_hap2	4036881	4036882	rs70993900	30230522	Zhang S	2018-09-19	Br J Dermatol	Subtype-Specific Inherited Predisposition to Pemphigus in Chinese Population.	Pemphigus vulgaris	255 Chinese ancestry cases, 501 Chinese ancestry controls	110 Chinese ancestry cases, 604 Chinese ancestry controls	6p21.32	NR	rs70993900-?	0.09	1E-45		18.57	NR	Affymetrix [416397]	N
615	chr6_cox_hap2	4036881	4036882	rs70993900	30230522	Zhang S	2018-09-19	Br J Dermatol	Subtype-Specific Inherited Predisposition to Pemphigus in Chinese Population.	Pemphigus	350 Chinese ancestry cases, 501 Chinese ancestry controls	146 Chinese ancestry cases, 604 Chinese ancestry controls	6p21.32	NR	rs70993900-?	0.09	1E-43		10.92	NR	Affymetrix [416397]	N
615	chr6_cox_hap2	4036959	4036960	rs11751024	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	6p21.32		rs11751024-C	0.601399	2E-18		0.0366905	[0.028-0.045] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4036959	4036960	rs11751024	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	CAG-882 sp003486385 abundance in stool	5,959 Finnish ancestry individuals	NA	6p21.32		rs11751024-A	0.400705	5E-8		0.104999	[0.067-0.143] unit increase	Illumina [7980478] (imputed)	N
615	chr6_cox_hap2	4036959	4036960	rs11751024	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TGM3	5,368 Icelandic ancestry individuals	NA	6p21.32		rs11751024-A	0.3876	6E-13		0.141161	[0.1-0.18] unit decrease	Illumina [7506463] (imputed)	N
615	chr6_cox_hap2	4036959	4036960	rs11751024	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.32	NR	rs11751024-?	NR	5E-24				Affymetrix [~ 8270000] (imputed)	N
615	chr6_cox_hap2	4036959	4036960	rs11751024	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs11751024-?	NR	9E-35				Affymetrix [~ 8270000] (imputed)	N
615	chr6_cox_hap2	4037099	4037100	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	VLDL cholesterol levels	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	7E-27		0.0483058	[0.039-0.057] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4037099	4037100	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total phospholipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	3E-13		0.0313476	[0.023-0.04] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4037099	4037100	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small LDL	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	9E-20		0.0410279	[0.032-0.05] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4037099	4037100	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium VLDL	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	2E-27		0.0484871	[0.04-0.057] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4037099	4037100	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium LDL	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	8E-20		0.0412131	[0.032-0.05] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4037099	4037100	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	2E-19		0.0399601	[0.031-0.049] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4037099	4037100	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in LDL	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	9E-17		0.0374103	[0.029-0.046] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4037099	4037100	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total free cholesterol levels	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	8E-17		0.036746	[0.028-0.045] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4037099	4037100	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol minus HDL-C levels	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	4E-18		0.038935	[0.03-0.048] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4037099	4037100	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Polyunsaturated fatty acid levels	115,006 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665908	4E-22		0.0423547	[0.034-0.051] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4037099	4037100	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	2E-28		0.0496534	[0.041-0.058] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4037099	4037100	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small LDL	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	1E-16		0.0372035	[0.028-0.046] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4037099	4037100	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium VLDL	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	4E-27		0.0485352	[0.04-0.057] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4037099	4037100	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium LDL	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	2E-18		0.0396392	[0.031-0.048] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4037099	4037100	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-6 fatty acid levels	115,006 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665908	3E-21		0.0416405	[0.033-0.05] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4037099	4037100	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Linoleic acid levels	115,006 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665908	1E-22		0.0433006	[0.035-0.052] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4037099	4037100	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	9E-26		0.0473496	[0.039-0.056] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4037099	4037100	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	8E-26		0.0473724	[0.039-0.056] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4037099	4037100	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small LDL particles	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	2E-20		0.0419422	[0.033-0.051] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4037099	4037100	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium VLDL particles	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	4E-27		0.0485075	[0.04-0.057] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4037099	4037100	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium LDL particles	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	6E-19		0.0402296	[0.031-0.049] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4037099	4037100	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of VLDL particles	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	7E-27		0.0480395	[0.039-0.057] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4037099	4037100	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	8E-28		0.0491721	[0.04-0.058] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4037099	4037100	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small LDL	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	6E-22		0.043478	[0.035-0.052] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4037099	4037100	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium LDL	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	2E-21		0.0430313	[0.034-0.052] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4037099	4037100	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in LDL	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	6E-18		0.0389019	[0.03-0.048] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4037099	4037100	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	2E-27		0.0488991	[0.04-0.058] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4037099	4037100	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small LDL	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	6E-19		0.0401589	[0.031-0.049] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4037099	4037100	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	3E-19		0.0405703	[0.032-0.049] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4037105	4037106	rs61126090	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Terminally Differentiated CD4-CD8- T cell Absolute Count	3,395 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs61126090-G	0.19907	1E-12		0.2671	[0.19-0.34] unit decrease	Illumina [18332267] (imputed)	N
615	chr6_cox_hap2	4037106	4037107	rs28383283	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Terminally Differentiated CD4-CD8- T cell %T cell	3,427 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs28383283-T	0.2651	1E-9		0.2109	[0.14-0.28] unit decrease	Illumina [18349913] (imputed)	N
615	chr6_cox_hap2	4037478	4037479	rs28383307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large HDL	115,082 European ancestry individuals	NA	6p21.32		rs28383307-C	0.805689	2E-9		0.0282931	[0.019-0.037] unit increase	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4037478	4037479	rs28383307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large HDL	115,082 European ancestry individuals	NA	6p21.32		rs28383307-C	0.805689	3E-9		0.0277214	[0.019-0.037] unit increase	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4037478	4037479	rs28383307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	6p21.32		rs28383307-C	0.805689	8E-11		0.0304025	[0.021-0.04] unit increase	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4037478	4037479	rs28383307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	6p21.32		rs28383307-C	0.805689	6E-9		0.026858	[0.018-0.036] unit increase	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4037478	4037479	rs28383307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	6p21.32		rs28383307-C	0.805689	2E-11		0.0315135	[0.022-0.041] unit increase	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4037505	4037506	rs28383308	33768542	Liu Y	2021-03-26	Clin Pharmacol Ther	Class II HLA Variants Associate with Risk of Pegaspargase Hypersensitivity.	Asparaginase hypersensitivity in acute lymphoblastic leukemia	2,290 European ancestry individuals, 310 African ancestry individuals, 798 Native American individuals, 112 Asian ancestry individuals, 387 individuals	NA	6p21.32	HLA-DQA1	rs28383308-T	NR	5E-14		1.95	[NR]	Affymetrix, Illumina [NR] (imputed)	N
615	chr6_cox_hap2	4037517	4037518	rs9271365	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hypothyroidism	30,155 European ancestry cases, 379,986 European ancestry controls, 1,114 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	6p21.32		rs9271365-G	NR	5E-123		0.2484	[0.23-0.27] unit increase	Affymetrix, Illumina [25801083] (imputed)	N
615	chr6_cox_hap2	4037517	4037518	rs9271365	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hashimoto thyroiditis	15,654 European ancestry cases, 379,986 European ancestry controls, 537 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	6p21.32		rs9271365-G	NR	1E-39		0.2531	[0.22-0.29] unit increase	Affymetrix, Illumina [25797652] (imputed)	N
615	chr6_cox_hap2	4037517	4037518	rs9271365	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	6p21.32	NR	rs9271365-?	NR	7E-35				Affymetrix [~ 8270000] (imputed)	N
615	chr6_cox_hap2	4037554	4037555	rs13191810	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium VLDL	115,082 European ancestry individuals	NA	6p21.32		rs13191810-C	0.687691	5E-25		0.0445033	[0.036-0.053] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4037554	4037555	rs13191810	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs13191810-C	0.687691	2E-21		0.040583	[0.032-0.049] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4037554	4037555	rs13191810	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs13191810-C	0.687691	3E-22		0.0414982	[0.033-0.05] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4037554	4037555	rs13191810	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs13191810-C	0.687691	5E-24		0.0433674	[0.035-0.052] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4037554	4037555	rs13191810	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs13191810-C	0.687691	3E-16		0.0350026	[0.027-0.043] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4037554	4037555	rs13191810	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	6p21.32		rs13191810-C	0.687723	6E-17		0.0344759	[0.026-0.043] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4037554	4037555	rs13191810	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs13191810-C	0.687691	1E-22		0.0419227	[0.034-0.05] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4037554	4037555	rs13191810	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs13191810-C	0.687691	3E-24		0.0434772	[0.035-0.052] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4037554	4037555	rs13191810	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs13191810-C	0.687691	7E-17		0.0354956	[0.027-0.044] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4037554	4037555	rs13191810	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-3 fatty acid levels	115,006 European ancestry individuals	NA	6p21.32		rs13191810-C	0.687723	5E-14		0.0321812	[0.024-0.041] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4037554	4037555	rs13191810	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs13191810-C	0.687691	5E-25		0.0444045	[0.036-0.053] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4037554	4037555	rs13191810	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large VLDL particles	115,082 European ancestry individuals	NA	6p21.32		rs13191810-C	0.687691	2E-22		0.0414621	[0.033-0.05] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4037554	4037555	rs13191810	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large VLDL particles	115,082 European ancestry individuals	NA	6p21.32		rs13191810-C	0.687691	9E-24		0.0430671	[0.035-0.051] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4037554	4037555	rs13191810	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of chylomicrons and extremely large VLDL particles	115,082 European ancestry individuals	NA	6p21.32		rs13191810-C	0.687691	2E-16		0.0351965	[0.027-0.044] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4037554	4037555	rs13191810	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	6p21.32		rs13191810-C	0.687691	1E-8		0.0223672	[0.015-0.03] unit increase	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4037554	4037555	rs13191810	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for VLDL particles	115,082 European ancestry individuals	NA	6p21.32		rs13191810-C	0.687691	4E-18		0.0359074	[0.028-0.044] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4037554	4037555	rs13191810	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.32	Intergenic	rs13191810-T	NR	1E-6	(men)	0.0240553	[0.014-0.034] unit decrease	Illumina [13520550] (imputed)	N
615	chr6_cox_hap2	4037577	4037578	rs9271366	26278503	Huang C	2015-11-01	Gastroenterology	Characterization of genetic loci that affect susceptibility to inflammatory bowel diseases in African Americans.	Ulcerative colitis	361 African American cases, 1,797 African American controls	NA	6p21.32	HLA-DQA1	rs9271366-A	NR	7E-6		1.627	[1.315-2.013]	Illumina [130241]	N
615	chr6_cox_hap2	4037577	4037578	rs9271366	23850713	Yang SK	2013-07-14	Gut	Genome-wide association study of Crohn's disease in Koreans revealed three new susceptibility loci and common attributes of genetic susceptibility across ethnic populations.	Crohn's disease	532 Korean ancestry cases, 733 Korean ancestry controls	1,779 Korean ancestry cases, 1,709 Korean ancestry controls	6p21.32	HLA-DRA, HLA-DRB5, BTNL2, HLA-DRB1, HLA-DQA1	rs9271366-A	0.888	5E-12		1.66	[1.44-1.92]	Illumina [5664371] (imputed)	N
615	chr6_cox_hap2	4037577	4037578	rs9271366	23511034	Yang SK	2013-04-01	Inflamm Bowel Dis	Genome-wide association study of ulcerative colitis in Koreans suggests extensive overlapping of genetic susceptibility with Caucasians.	Ulcerative colitis	388 Korean ancestry cases, 739 Korean ancestry controls	417 Korean ancestry cases, 732 Korean ancestry controls	6p21.32	HLA-DRB1, HLA-DQA1	rs9271366-G	0.11	1E-18		2.1	[1.78-2.48]	Illumina [581060]	N
615	chr6_cox_hap2	4037577	4037578	rs9271366	21699788	Okada Y	2011-06-20	Gastroenterology	HLA-Cw*1202-B*5201-DRB1*1502 haplotype increases risk for ulcerative colitis but reduces risk for Crohn's disease.	Ulcerative colitis or Crohn's disease	372 Japanese ancestry Crohn's disease cases, 372 Japanese ancestry ulcerative colitis cases	607 Japanese ancestry Crohn's disease cases, 376 Japanese ancestry ulcerative colitis cases	6p21.32	MHC, HLA-DRB1	rs9271366-C	0.21	2E-70	(UC vs. CD)	4.44	[3.74-5.27]	Illumina [461368]	N
615	chr6_cox_hap2	4037577	4037578	rs9271366	20694011	Ferreira RC	2010-08-08	Nat Genet	Association of IFIH1 and other autoimmunity risk alleles with selective IgA deficiency.	Immunoglobulin A	430 European ancestry cases, 1,090 European ancestry controls	342 European ancestry cases, 886 European ancestry controls	6p21.32	HLA-DRB1	rs9271366-?	0.85	3E-33		7.69	[5.26-11.11]	Illumina [2057134] (imputed)	N
615	chr6_cox_hap2	4037577	4037578	rs9271366	20598377	Nischwitz S	2010-06-30	J Neuroimmunol	Evidence for VAV2 and ZNF433 as susceptibility genes for multiple sclerosis.	Multiple sclerosis	590 European ancestry cases, 825 European ancestry controls	NA	6p21.32	DQA1	rs9271366-G	NR	4E-17		2.62	[2.09-3.28]	Illumina [~ 300000]	N
615	chr6_cox_hap2	4037577	4037578	rs9271366	19838195	Gateva V	2009-11-01	Nat Genet	A large-scale replication study identifies TNIP1, PRDM1, JAZF1, UHRF1BP1 and IL10 as risk loci for systemic lupus erythematosus.	Systemic lupus erythematosus	1,310 European ancestry cases, 7,859 European ancestry controls	1,963 European ancestry cases, 4,329 European ancestry controls	6p21.32	HLA-DRB1	rs9271366-G	0.16	1E-7		1.26	[1.18-1.36]	Illumina [~ 2100000] (imputed)	N
615	chr6_cox_hap2	4037577	4037578	rs9271366	19525955	Bahlo M	2009-06-14	Nat Genet	Genome-wide association study identifies new multiple sclerosis susceptibility loci on chromosomes 12 and 20.	Multiple sclerosis	1,618 European ancestry cases, 3,413 European ancestry controls	2,256 European ancestry cases, 2,310 European ancestry controls	6p21.32	HLA-DRB1	rs9271366-G	0.15	7E-184		2.78	[NR]	Illumina [302098]	N
615	chr6_cox_hap2	4037631	4037632	rs9271367	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on plasmacytoid Dendritic Cell	2,872 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9271367-A	0.85909	2E-29		0.5463	[0.45-0.64] unit decrease	Illumina [17926607] (imputed)	N
615	chr6_cox_hap2	4037631	4037632	rs9271367	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on myeloid Dendritic Cell	2,872 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9271367-A	0.85909	3E-35		0.5882	[0.5-0.68] unit decrease	Illumina [17926605] (imputed)	N
615	chr6_cox_hap2	4037631	4037632	rs9271367	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on Dendritic Cell	2,871 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9271367-A	0.85909	4E-32		0.5586	[0.47-0.65] unit decrease	Illumina [17926566] (imputed)	N
615	chr6_cox_hap2	4037631	4037632	rs9271367	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on CD33- HLA DR+	1,635 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9271367-A	0.85909	2E-12		0.4146	[0.3-0.53] unit decrease	Illumina [16999305] (imputed)	N
615	chr6_cox_hap2	4037721	4037722	rs607929	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	6p21.32	intergenic	rs607929-G	0.4428	4E-9		0.02092051	[0.014-0.028] unit increase	Affymetrix [~ 2500000] (imputed)	N
615	chr6_cox_hap2	4037790	4037791	rs9271375	35074870	Chia R	2022-02-01	Proc Natl Acad Sci U S A	Identification of genetic risk loci and prioritization of genes and pathways for myasthenia gravis: a genome-wide association study.	Late-onset myasthenia gravis	1,278 European ancestry cases, 33,652 European ancestry controls	308 European ancestry cases, 7,056 European ancestry controls	6p21.32		rs9271375-A	0.481	2E-19		0.66	[0.6-0.72]	Illumina [24006246] (imputed)	N
615	chr6_cox_hap2	4037790	4037791	rs9271375	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Urolithiasis	6,223 European ancestry cases, 482,123 European ancestry controls, 11,699 East Asian ancestry cases, 167,027 East Asian ancestry controls	NA	6p21.32		rs9271375-A	NR	5E-11		0.0785	[0.055-0.102] unit decrease	Affymetrix, Illumina [25845211] (imputed)	N
615	chr6_cox_hap2	4037880	4037881	rs28688825	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	6p21.32	NR	rs28688825-?	NR	1E-28				Affymetrix [~ 8270000] (imputed)	N
615	chr6_cox_hap2	4037880	4037881	rs28688825	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs28688825-?	NR	9E-24				Affymetrix [~ 8270000] (imputed)	N
615	chr6_cox_hap2	4037880	4037881	rs28688825	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	6p21.32	AGER, AGPAT1, BRD2, BTNL2, C6orf10, EGFL8, GPSM3, HCG23, HLA-DMA, HLA-DMB, HLA-DOB, HLA-DQA1, HLA-DQA2, HLA-DQB1, HLA-DQB2, HLA-DRA, HLA-DRB1, HLA-DRB5, HLA-DRB6, LOC100294145, MIR6721, MIR6833, NOTCH4, PBX2, PPT2-EGFL8, PSMB8, PSMB9, RNF5, RNF5P1, TAP1, TAP2, TAPSAR1	rs28688825-A	0.883307	5E-31		1.1379826	[1.12-1.16]	Affymetrix [8274727] (imputed)	N
615	chr6_cox_hap2	4037936	4037937	rs28383314	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	6p21.32		rs28383314-T	0.377043	8E-21		0.0374324	[0.03-0.045] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4037936	4037937	rs28383314	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	6p21.32		rs28383314-T	0.377036	7E-12		0.0274798	[0.02-0.035] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4037936	4037937	rs28383314	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs28383314-T	0.377036	2E-25		0.043251	[0.035-0.051] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4037936	4037937	rs28383314	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large HDL	115,082 European ancestry individuals	NA	6p21.32		rs28383314-T	0.377036	6E-13		0.0298794	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4037936	4037937	rs28383314	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs28383314-T	0.377036	2E-27		0.0445853	[0.037-0.053] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4037936	4037937	rs28383314	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small HDL	115,082 European ancestry individuals	NA	6p21.32		rs28383314-T	0.377036	4E-24		0.0415957	[0.034-0.05] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4037936	4037937	rs28383314	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium HDL	115,082 European ancestry individuals	NA	6p21.32		rs28383314-T	0.377036	2E-21		0.0397131	[0.032-0.048] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4037936	4037937	rs28383314	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large HDL	115,082 European ancestry individuals	NA	6p21.32		rs28383314-T	0.377036	4E-8		0.0221728	[0.014-0.03] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4037936	4037937	rs28383314	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in VLDL	115,082 European ancestry individuals	NA	6p21.32		rs28383314-T	0.377036	9E-23		0.0401294	[0.032-0.048] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4037936	4037937	rs28383314	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in HDL	115,082 European ancestry individuals	NA	6p21.32		rs28383314-T	0.377036	8E-21		0.0389843	[0.031-0.047] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4037936	4037937	rs28383314	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total triglycerides levels	115,082 European ancestry individuals	NA	6p21.32		rs28383314-T	0.377036	8E-24		0.0412963	[0.033-0.049] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4037936	4037937	rs28383314	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small HDL	115,082 European ancestry individuals	NA	6p21.32		rs28383314-T	0.377036	5E-22		0.0409595	[0.033-0.049] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4037936	4037937	rs28383314	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total fatty acid levels	115,006 European ancestry individuals	NA	6p21.32		rs28383314-T	0.377051	4E-25		0.0434702	[0.035-0.052] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4037936	4037937	rs28383314	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Saturated fatty acid levels	115,006 European ancestry individuals	NA	6p21.32		rs28383314-T	0.377051	4E-20		0.0385885	[0.03-0.047] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4037936	4037937	rs28383314	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6p21.32		rs28383314-T	0.377036	9E-13		0.0304107	[0.022-0.039] unit increase	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4037936	4037937	rs28383314	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	6p21.32		rs28383314-T	0.377036	1E-11		0.0288571	[0.021-0.037] unit increase	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4037936	4037937	rs28383314	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small HDL	115,082 European ancestry individuals	NA	6p21.32		rs28383314-T	0.377036	8E-22		0.0405037	[0.032-0.049] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4037936	4037937	rs28383314	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6p21.32		rs28383314-T	0.377036	6E-17		0.0342966	[0.026-0.042] unit increase	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4037936	4037937	rs28383314	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	6p21.32		rs28383314-C	NR	4E-59		0.0343	[0.03-0.038] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
615	chr6_cox_hap2	4037936	4037937	rs28383314	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	6p21.32		rs28383314-C	NR	9E-101		0.0363	[0.033-0.04] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
615	chr6_cox_hap2	4037936	4037937	rs28383314	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.32		rs28383314-T	0.375	6E-103				Affymetrix [10369434] (imputed)	N
615	chr6_cox_hap2	4037936	4037937	rs28383314	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DQA1	rs28383314-T	NR	2E-12		0.0225613	[0.016-0.029] unit decrease	Affymetrix [323858] (imputed)	N
615	chr6_cox_hap2	4037936	4037937	rs28383314	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	HLA-DQA1	rs28383314-T	NR	4E-11		0.0212936	[0.015-0.028] unit decrease	Affymetrix [127266] (imputed)	N
615	chr6_cox_hap2	4037936	4037937	rs28383314	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DQA1	rs28383314-T	NR	5E-19		0.0281171	[0.022-0.034] unit increase	Affymetrix [323123] (imputed)	N
615	chr6_cox_hap2	4037936	4037937	rs28383314	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs28383314-T	NR	1E-20		0.027344	[0.022-0.033] unit decrease	Affymetrix [321169] (imputed)	N
615	chr6_cox_hap2	4037936	4037937	rs28383314	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p21.32	NR	rs28383314-C	0.637389	2E-194				Affymetrix, Illumina [19872809] (imputed)	N
615	chr6_cox_hap2	4037936	4037937	rs28383314	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	6p21.32	NR	rs28383314-C	0.624131	6E-199		0.061635	[0.058-0.066] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
615	chr6_cox_hap2	4037936	4037937	rs28383314	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	6p21.32	HLA-DQA1	rs28383314-T	0.375891	4E-76		0.0378536	[0.034-0.042] unit decrease	Affymetrix [NR] (imputed)	N
615	chr6_cox_hap2	4037936	4037937	rs28383314	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	6p21.32	LINC00336	rs28383314-?	NR	4E-49		0.0398	[0.035-0.045] unit decrease	Affymetrix [5701386] (imputed)	N
615	chr6_cox_hap2	4037936	4037937	rs28383314	30643255	Kristjansson RP	2019-01-14	Nat Genet	A loss-of-function variant in ALOX15 protects against nasal polyps and chronic rhinosinusitis.	Nasal polyps	86 European ancestry whole-genome sequenced cases, 4,280 European ancestry cases, 13,941 European ancestry whole-genome sequenced controls, 700,740 European ancestry controls	NA	6p21.32	intergenic	rs28383314-C	0.630	5E-8		1.14	[1.09-1.19]	Affymetrix, Illumina [up to 37123566] (imputed)	N
615	chr6_cox_hap2	4037936	4037937	rs28383314	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	6p21.32	HLA-DQA1	rs28383314-T	0.377	3E-9		0.086	[0.059-0.113] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
615	chr6_cox_hap2	4037936	4037937	rs28383314	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	6p21.32	intergenic	rs28383314-C	0.6172	9E-64		0.06028895	[0.053-0.067] unit increase	Affymetrix [~ 2500000] (imputed)	N
615	chr6_cox_hap2	4037936	4037937	rs28383314	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	6p21.32	intergenic	rs28383314-C	0.6171	7E-27		0.03829286	[0.031-0.045] unit increase	Affymetrix [~ 2500000] (imputed)	N
615	chr6_cox_hap2	4037936	4037937	rs28383314	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	6p21.32	intergenic	rs28383314-C	0.6172	1E-60		0.05870737	[0.052-0.066] unit increase	Affymetrix [~ 2500000] (imputed)	N
615	chr6_cox_hap2	4038002	4038003	rs144934262	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on CD33+ HLA DR+ CD14-	1,579 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs144934262-T	0.05991	2E-10		0.5304	[0.37-0.69] unit increase	Illumina [16961968] (imputed)	N
615	chr6_cox_hap2	4038179	4038180	rs9271393	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Peripheral artery disease	7,114 European ancestry cases, 475,964 European ancestry controls, 4,112 East Asian ancestry cases, 173,601 East Asian ancestry controls	NA	6p21.32		rs9271393-C	NR	2E-8		0.116	[0.075-0.157] unit increase	Affymetrix, Illumina [25844651] (imputed)	N
615	chr6_cox_hap2	4038247	4038248	rs9271401	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs9271401-G	0.245	9E-21	(Complement C4, C4A.C4B.4481.34.2)	0.28	[0.22-0.34] unit decrease	Affymetrix [10572788] (imputed)	N
615	chr6_cox_hap2	4038247	4038248	rs9271401	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs9271401-G	0.245	5E-21	(cAMP-specific 3',5'-cyclic phosphodiesterase 4D, PDE4D.5255.22.3)	0.28	[0.22-0.34] unit decrease	Affymetrix [10572788] (imputed)	N
615	chr6_cox_hap2	4038247	4038248	rs9271401	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs9271401-G	0.245	1E-24	(Glutamate receptor 4, GRIA4.10760.107.3)	0.3	[0.24-0.36] unit decrease	Affymetrix [10572788] (imputed)	N
615	chr6_cox_hap2	4038310	4038311	rs9271406	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RPL30	5,357 Icelandic ancestry individuals	NA	6p21.32		rs9271406-G	0.4339	4E-12		0.126569	[0.091-0.162] unit increase	Illumina [7506463] (imputed)	N
615	chr6_cox_hap2	4038310	4038311	rs9271406	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	6p21.32		rs9271406-?	NR	2E-8		0.00512675	[0.0033-0.0069] unit decrease	NR [NR]	N
615	chr6_cox_hap2	4038310	4038311	rs9271406	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs9271406-A	NR	2E-24		0.0290677	[0.023-0.035] unit decrease	Affymetrix [321169] (imputed)	N
615	chr6_cox_hap2	4038310	4038311	rs9271406	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6p21.32	NR	rs9271406-G	0.497785	7E-25		0.024019469	[0.019-0.029] unit increase	Affymetrix [93095623] (imputed)	N
615	chr6_cox_hap2	4038581	4038582	rs9271421	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	HLA-DQA1	rs9271421-C	0.861	5E-29	(GDH/6PGL endoplasmic bifunctional protein, H6PD.7161.25.3)	0.39	[0.31-0.47] unit decrease	Affymetrix [10572788] (imputed)	N
615	chr6_cox_hap2	4038707	4038708	rs9271429	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	Systemic lupus erythematosus	1,639 East Asian ancestry cases, 2,410 East Asian ancestry controls	NA			rs9271429-G	NR	2E-11		0.2667	[0.19-0.34] unit decrease	Illumina [NR] (imputed)	N
615	chr6_cox_hap2	4038753	4038754	rs9271431	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs9271431-A	NR	2E-14		0.0217731	[0.016-0.027] unit increase	Affymetrix [319769] (imputed)	N
615	chr6_cox_hap2	4038753	4038754	rs9271431	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs9271431-A	NR	8E-14		0.0213218	[0.016-0.027] unit increase	Affymetrix [319769] (imputed)	N
615	chr6_cox_hap2	4039353	4039354	rs9271469	34212547	An J	2021-07-01	Allergy Asthma Immunol Res	Genome-Wide Association Study of Korean Asthmatics: A Comparison With UK Asthmatics.	Adult asthma	1,386 Korean ancestry cases, 5,205 Korean ancestry controls	NA	6p21.32		rs9271469-C	0.28	4E-8		1.33	[1.2-1.48]	Affymetrix [4922160] (imputed)	N
615	chr6_cox_hap2	4039436	4039437	rs76815088	35074870	Chia R	2022-02-01	Proc Natl Acad Sci U S A	Identification of genetic risk loci and prioritization of genes and pathways for myasthenia gravis: a genome-wide association study.	Myasthenia gravis	1,873 European ancestry cases, 36,370 European ancestry controls	7,412 European ancestry individuals	6p21.32		rs76815088-C	0.061	6E-16		0.42	[0.34-0.52]	Illumina [24006246] (imputed)	N
615	chr6_cox_hap2	4039941	4039942	rs34104805	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.32	NR	rs34104805-?	NR	1E-13				Affymetrix [~ 8270000] (imputed)	N
615	chr6_cox_hap2	4039941	4039942	rs34104805	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs34104805-?	NR	4E-17				Affymetrix [~ 8270000] (imputed)	N
615	chr6_cox_hap2	4039989	4039990	rs35597309	25129146	Wu C	2014-08-17	Nat Genet	Joint analysis of three genome-wide association studies of esophageal squamous cell carcinoma in Chinese populations.	Esophageal squamous cell carcinoma	5,337 Han Chinese ancestry cases, 5,787 Han Chinese ancestry controls	9,654 Han Chinese ancestry cases, 10,058 Han Chinese ancestry  controls	6p21.32	HLA	rs35597309-A	0.072	1E-7		1.19	[1.12-1.27]	Affymetrix, Illumina [7556215] (imputed)	N
615	chr6_cox_hap2	4040023	4040024	rs9271500	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	6p21.32		rs9271500-C	0.54239	1E-9		0.0250109	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4040086	4040087	rs73728611	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs73728611-A	0.878781	2E-8		0.0350323	[0.023-0.047] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4040086	4040087	rs73728611	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs73728611-A	0.878781	2E-8		0.0353342	[0.023-0.048] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4040086	4040087	rs73728611	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs73728611-A	0.878781	5E-9		0.0365405	[0.024-0.049] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4040086	4040087	rs73728611	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	6p21.32		rs73728611-A	0.878767	4E-9		0.0354428	[0.024-0.047] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4040086	4040087	rs73728611	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs73728611-A	0.878781	5E-8		0.0343432	[0.022-0.047] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4040086	4040087	rs73728611	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs73728611-A	0.878781	3E-8		0.0346994	[0.022-0.047] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4040086	4040087	rs73728611	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large VLDL particles	115,082 European ancestry individuals	NA	6p21.32		rs73728611-A	0.878781	3E-8		0.0346989	[0.022-0.047] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4040086	4040087	rs73728611	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large VLDL particles	115,082 European ancestry individuals	NA	6p21.32		rs73728611-A	0.878781	5E-8		0.0343334	[0.022-0.047] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4040086	4040087	rs73728611	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of chylomicrons and extremely large VLDL particles	115,082 European ancestry individuals	NA	6p21.32		rs73728611-A	0.878781	2E-8		0.0352602	[0.023-0.048] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4040086	4040087	rs73728611	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	6p21.32	HLA-DQA1	rs73728611-A	0.8765	1E-9		0.003	[0.0022-0.0038] unit increase	Affymetrix [15275733] (imputed)	N
615	chr6_cox_hap2	4040714	4040715	rs9271536	33204752	Butler-Laporte G	2020-09-24	Open Forum Infect Dis	Genetic Determinants of Antibody-Mediated Immune Responses to Infectious Diseases Agents: A Genome-Wide and HLA Association Study.	Epstein-Barr virus VCA p18 antibody levels	8,518 White British ancestry individuals	NA	6p21.32	HLA-DQA1	rs9271536-A	0.180	7E-21		0.19	[0.15-0.23] unit increase	NR [25472218] (imputed)	N
615	chr6_cox_hap2	4040714	4040715	rs9271536	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Terminally Differentiated CD4+ T cell %T cell	3,427 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9271536-T	0.77188	3E-18		0.291	[0.23-0.36] unit decrease	Illumina [18349913] (imputed)	N
615	chr6_cox_hap2	4040714	4040715	rs9271536	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Terminally Differentiated CD4+ T cell %CD4+ T cell	3,427 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9271536-T	0.77188	8E-17		0.2806	[0.21-0.35] unit decrease	Illumina [18349913] (imputed)	N
615	chr6_cox_hap2	4040714	4040715	rs9271536	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	SSC-A on CD4+ T cell	3,113 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9271536-T	0.76919	9E-14		0.2591	[0.19-0.33] unit decrease	Illumina [18030777] (imputed)	N
615	chr6_cox_hap2	4040714	4040715	rs9271536	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Naive CD4+ T cell %CD4+ T cell	3,427 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9271536-T	0.77188	4E-12		0.2324	[0.17-0.3] unit increase	Illumina [18349913] (imputed)	N
615	chr6_cox_hap2	4040714	4040715	rs9271536	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Effector Memory CD4+ T cell %T cell	3,427 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9271536-T	0.77188	3E-12		0.2368	[0.17-0.3] unit decrease	Illumina [18349913] (imputed)	N
615	chr6_cox_hap2	4040718	4040719	rs9271537	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Terminally Differentiated CD4+ T cell Absolute Count	3,395 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9271537-T	0.6246700000000001	2E-9		0.1866	[0.13-0.25] unit decrease	Illumina [18332267] (imputed)	N
615	chr6_cox_hap2	4040764	4040765	rs9271539	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p21.32	HLA-DRB1, HLA-DQA1	rs9271539-?	0.56	2E-7	(Turkish)	1.6393442	[1.35-1.96]	Illumina [up to 547389]	N
615	chr6_cox_hap2	4040895	4040896	rs9271547	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	HLA-DQA2	rs9271547-A	0.551	6E-80	(HLA class II histocompatibility antigen, DQ alpha 2 chain, HLA.DQA2.7757.5.3)	0.45	[0.41-0.49] unit increase	Affymetrix [10572788] (imputed)	N
615	chr6_cox_hap2	4040976	4040977	rs74995702	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs affecting bone structure and mineralization)	6,143 East Asian ancestry cases, 172,583 East Asian ancestry controls	NA	6p21.32		rs74995702-G	0.152630075	8E-16		0.21422668	[0.16-0.27] unit increase	Illumina [13429980] (imputed)	N
615	chr6_cox_hap2	4041060	4041061	rs9271556	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	6p21.32		rs9271556-T	0.355911	1E-10		0.0285997	[0.02-0.037] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4041236	4041237	rs9271573	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small LDL	115,082 European ancestry individuals	NA	6p21.32		rs9271573-A	0.406337	9E-24		0.0408933	[0.033-0.049] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4041236	4041237	rs9271573	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium LDL	115,082 European ancestry individuals	NA	6p21.32		rs9271573-A	0.406337	6E-23		0.0404102	[0.032-0.048] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4041236	4041237	rs9271573	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large LDL	115,082 European ancestry individuals	NA	6p21.32		rs9271573-A	0.406337	6E-20		0.0376072	[0.03-0.046] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4041236	4041237	rs9271573	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in LDL	115,082 European ancestry individuals	NA	6p21.32		rs9271573-A	0.406337	1E-21		0.0393213	[0.031-0.047] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4041236	4041237	rs9271573	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to monounsaturated fatty acids	115,006 European ancestry individuals	NA	6p21.32		rs9271573-A	0.406357	1E-12		0.0285962	[0.021-0.036] unit increase	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4041236	4041237	rs9271573	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Monounsaturated fatty acid levels	115,006 European ancestry individuals	NA	6p21.32		rs9271573-A	0.406357	4E-25		0.0428694	[0.035-0.051] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4041236	4041237	rs9271573	32231244	Xie J	2020-03-30	Nat Commun	The genetic architecture of membranous nephropathy and its potential to improve non-invasive diagnosis.	Membranous nephropathy	2,150 European ancestry cases, 5,829 European ancestry controls, 1,612 East Asian ancestry cases, 1,970 East Asian ancestry controls	826 Chinese ancestry cases, 1,239 Chinese ancestry controls	6p21.32	HLA	rs9271573-A	NR	3E-154		2.41	[2.26-2.57]	Illumina [~ 7000000] (imputed)	N
615	chr6_cox_hap2	4041236	4041237	rs9271573	32231244	Xie J	2020-03-30	Nat Commun	The genetic architecture of membranous nephropathy and its potential to improve non-invasive diagnosis.	Membranous nephropathy	2,150 European ancestry cases, 5,829 European ancestry controls	NA	6p21.32	HLA	rs9271573-A	0.44	2E-60		2.06	[1.89-2.25]	Illumina [~ 7000000] (imputed)	N
615	chr6_cox_hap2	4041236	4041237	rs9271573	32231244	Xie J	2020-03-30	Nat Commun	The genetic architecture of membranous nephropathy and its potential to improve non-invasive diagnosis.	Membranous nephropathy	1,612 East Asian ancestry cases, 1,970 East Asian ancestry controls	NA	6p21.32	HLA	rs9271573-A	0.35	4E-102		2.97	[2.69-3.28]	Illumina [~ 7000000] (imputed)	N
615	chr6_cox_hap2	4041236	4041237	rs9271573	28076899	Taylor KE	2017-01-11	Arthritis Rheumatol	Genome-Wide Association Analysis Reveals Genetic Heterogeneity of Sjogren's Syndrome According to Ancestry.	Sjogren's syndrome	585 European ancestry cases, up to 51 African ancestry cases, up to 164 Hispanic/Native american cases, up to 570 Asian ancestry cases, up to 59 cases, 1,546 European ancestry controls, 495 African ancestry controls, 237 Hispanic/Native American controls, 306 Asian ancestry controls, 148 controls.	NA	6p21.32	HLA-DQA1, HLA-DQB1, HLA-DRB1	rs9271573-?		3E-42		2.02	[1.82-2.23]	Illumina [1444884]	N
615	chr6_cox_hap2	4041236	4041237	rs9271573	28076899	Taylor KE	2017-01-11	Arthritis Rheumatol	Genome-Wide Association Analysis Reveals Genetic Heterogeneity of Sjogren's Syndrome According to Ancestry.	Sjogren's syndrome	585 European ancestry cases, 1,546 European ancestry controls	NA	6p21.32	HLA-DQA1, HLA-DQB1, HLA-DRB1, HLA-DQA2	rs9271573-?		3E-34		2.29	[2.01-2.62]	Illumina [1444884]	N
615	chr6_cox_hap2	4041359	4041360	rs2395225	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs2395225-C	NR	3E-11		0.0204906	[0.014-0.027] unit decrease	Affymetrix [321169] (imputed)	N
615	chr6_cox_hap2	4041370	4041371	rs9271578	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs9271578-A	NR	2E-24		0.0287397	[0.023-0.034] unit decrease	Affymetrix [319769] (imputed)	N
615	chr6_cox_hap2	4041370	4041371	rs9271578	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs9271578-A	NR	3E-23		0.0280541	[0.023-0.034] unit decrease	Affymetrix [319769] (imputed)	N
615	chr6_cox_hap2	4041370	4041371	rs9271578	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	6p21.32		rs9271578-T	0.501806	3E-49		0.037933793	[0.033-0.043] unit increase	Affymetrix [93095623] (imputed)	N
615	chr6_cox_hap2	4041372	4041373	rs9271579	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic sinusitis	7,529 European ancestry cases, 444,966 European ancestry controls, 4,617 East Asian ancestry cases, 152,226 East Asian ancestry controls	NA	6p21.32		rs9271579-A	NR	4E-36		0.1984	[0.17-0.23] unit increase	Affymetrix, Illumina [25838895] (imputed)	N
615	chr6_cox_hap2	4041376	4041377	rs9271580	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Nasal polyps	5,093 European ancestry cases, 444,966 European ancestry controls, 160 East Asian ancestry cases, 151,846 East Asian ancestry controls	NA	6p21.32		rs9271580-G	NR	2E-40		0.352	[0.3-0.4] unit increase	Affymetrix, Illumina [25837843] (imputed)	N
615	chr6_cox_hap2	4041457	4041458	rs17533090	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs17533090-T	0.22	5E-9		4.5	[3.42-5.91]	Illumina [NR] (imputed)	N
615	chr6_cox_hap2	4041470	4041471	rs35062987	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	6p21.32	intergenic	rs35062987-T	0.2102	2E-39		0.0418	[0.036-0.048] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
615	chr6_cox_hap2	4041503	4041504	rs34831921	32678081	Timmers PRHJ	2020-07-16	Nat Commun	Multivariate genomic scan implicates novel loci and haem metabolism in human ageing.	Aging traits (healthspan, parental lifespan or longevity) (multivariate analysis)	at least 837,415 European ancestry individuals	NA	6p21.32	HLA-DRB1, HLA-DQA1	rs34831921-A	0.1	6E-13				NR [7320282]	N
615	chr6_cox_hap2	4041503	4041504	rs34831921	29030599	Joshi PK	2017-10-13	Nat Commun	Genome-wide meta-analysis associates HLA-DQA1/DRB1 and LPA and lifestyle factors with human longevity.	Parental lifespan	up to 586,626 European ancestry individuals, up to 19,433 African ancestry individuals	NA	6p21.32	HLA-DQA1, HLA-DRB1	rs34831921-A	0.09	4E-8	(EA)	0.6	years increase	Affymetrix, Illumina [at least 13643373] (imputed)	N
615	chr6_cox_hap2	4041614	4041615	rs9271585	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	6p21.32	HLA-DQA1	rs9271585-A	0.4121	3E-7	(East Asian)	0.03	[0.019-0.041] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
615	chr6_cox_hap2	4041614	4041615	rs9271585	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	6p21.32	HLA-DQA1	rs9271585-A	0.3329	7E-12		0.0249	[0.018-0.032] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
615	chr6_cox_hap2	4041614	4041615	rs9271585	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	6p21.32	NR	rs9271585-A	0.3502	8E-8	(men)	0.0311	[0.02-0.042] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
615	chr6_cox_hap2	4041634	4041635	rs9271586	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.32		rs9271586-G	0.495	6E-115				Affymetrix [10369434] (imputed)	N
615	chr6_cox_hap2	4041660	4041661	rs3129763	21779181	Gorlova O	2011-07-14	PLoS Genet	Identification of novel genetic markers associated with clinical phenotypes of systemic sclerosis through a genome-wide association strategy.	Systemic sclerosis	2,296 European ancestry cases, 5,172 European ancestry controls	3,175 European ancestry cases, 4,210 European ancestry controls	6p21.32	HLA-DRB1, HLA-DQA1	rs3129763-?	0.25	1E-11	(ATA positive)	1.65	[1.42-1.91]	Illumina [NR] (imputed)	N
615	chr6_cox_hap2	4041688	4041689	rs9271588	31879220	Lin GW	2019-12-23	Lancet Oncol	Genetic risk of extranodal natural killer T-cell lymphoma: a genome-wide association study in multiple populations.	Extranodal natural killer T-cell lymphoma (nasal type)	700 Han Chinese ancestry cases, 7,752 Han Chinese ancestry controls	717 East Asian ancestry cases, 12,650 East Asian ancestry controls	6p21.32	HLA-DRB1	rs9271588-C	0.4	9E-26		1.53	[1.41-1.65]	Illumina [3892410] (imputed)	N
615	chr6_cox_hap2	4041688	4041689	rs9271588	31301374	Noguchi E	2019-07-10	J Allergy Clin Immunol	HLA-DQ and RBFOX1 as susceptibility genes for an outbreak of hydrolyzed wheat allergy.	Hydrolysed wheat protein allergy	452 Japanese ancestry cases, 2,700 Japaneses ancestry controls	45 Japanese ancestry cases, 326 Japaneses ancestry controls	6p21.32	NR	rs9271588-G	0.523	1E-26		2.3	[1.98-2.70]	Illumina [6575663] (imputed)	N
615	chr6_cox_hap2	4041688	4041689	rs9271588	31102405	Labreche K	2019-05-17	Neuro Oncol	A genome-wide association study identifies susceptibility loci for primary central nervous system lymphoma at 6p25.3 and 3p22.1: a LOC network study.	Primary central nervous system lymphoma	475 European ancestry cases, 1,134 European ancestry controls	NA	6p21.32	NR	rs9271588-?	NR	2E-6		1.45	[1.25-1.68]	Illumina [> 10000000] (imputed)	N
615	chr6_cox_hap2	4041688	4041689	rs9271588	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	6p21.32	intergenic	rs9271588-C	0.5051	4E-66		0.06142442	[0.054-0.068] unit increase	Affymetrix [~ 2500000] (imputed)	N
615	chr6_cox_hap2	4041688	4041689	rs9271588	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	6p21.32	intergenic	rs9271588-C	0.5051	2E-58		0.0576552	[0.051-0.065] unit increase	Affymetrix [~ 2500000] (imputed)	N
615	chr6_cox_hap2	4041688	4041689	rs9271588	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	6p21.32	intergenic	rs9271588-C	0.5051	1E-58		0.05764791	[0.051-0.065] unit increase	Affymetrix [~ 2500000] (imputed)	N
615	chr6_cox_hap2	4041688	4041689	rs9271588	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	6p21.32	intergenic	rs9271588-C	0.5051	9E-68		0.06247162	[0.055-0.07] unit increase	Affymetrix [~ 2500000] (imputed)	N
615	chr6_cox_hap2	4041688	4041689	rs9271588	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	6p21.32	intergenic	rs9271588-C	0.5051	2E-66		0.06164672	[0.055-0.069] unit increase	Affymetrix [~ 2500000] (imputed)	N
615	chr6_cox_hap2	4041688	4041689	rs9271588	24097066	Li Y	2013-10-06	Nat Genet	A genome-wide association study in Han Chinese identifies a susceptibility locus for primary Sjogren's syndrome at 7q11.23.	Sjogren's syndrome	542 Han Chinese ancestry cases, 1,050 Han Chinese ancestry controls	1,303 Han Chinese ancestry cases, 2,727 Han Chinese ancestry controls	6p21.32	HLA-DRB1, HLA-DQA1, c6orf10, BTNL2, HLA-DRA, HLA-DRB5, HLA-DRB6	rs9271588-T	0.532	9E-37		1.75	[1.59-1.89]	Affymetrix [556134]	N
615	chr6_cox_hap2	4041793	4041794	rs17599077	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs17599077-C	0.19	2E-8		4.08	[3.13-5.32]	Illumina [NR] (imputed)	N
615	chr6_cox_hap2	4041933	4041934	rs9271593	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs9271593-C	NR	4E-12		0.0198725	[0.014-0.025] unit increase	Affymetrix [321016] (imputed)	N
615	chr6_cox_hap2	4041983	4041984	rs34967069	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Tumor necrosis factor receptor superfamily member 6 levels	21,758 European ancestry individuals	9,173 individuals	6p21.32		rs34967069-T	0.12	3E-20		0.1381	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
615	chr6_cox_hap2	4041983	4041984	rs34967069	30642433	Timmers PR	2019-01-15	Elife	Genomics of 1 million parent lifespans implicates novel pathways and common diseases and distinguishes survival chances.	Parental lifespan	at least 500,193 European ancestry offspring	NA	6p21.32	HLA-DQA1	rs34967069-T	0.07	4E-9		0.5613	[0.37-0.75] years increase	NR [up to 9000000] (imputed)	N
615	chr6_cox_hap2	4042026	4042027	rs9271597	30674883	Jin Y	2019-01-23	Nat Commun	Early-onset autoimmune vitiligo associated with an enhancer variant haplotype that upregulates class II HLA expression.	Vitiligo (late onset)	1,467 European ancestry cases, 19,156 European ancestry controls	977 European ancestry cases, 727 European ancestry controls	6p21.32	NR	rs9271597-A	NR	4E-34		1.63	[1.55-1.71]	NR [up to 494043] (imputed)	N
615	chr6_cox_hap2	4042026	4042027	rs9271597	30674883	Jin Y	2019-01-23	Nat Commun	Early-onset autoimmune vitiligo associated with an enhancer variant haplotype that upregulates class II HLA expression.	Vitiligo (early onset)	704 European ancestry cases, 9,031 European ancestry controls	375 European ancestry cases, 1,455 European ancestry controls	6p21.32	NR	rs9271597-A	NR	2E-40		2.23	[2.11-2.35]	NR [up to 494043] (imputed)	N
615	chr6_cox_hap2	4042026	4042027	rs9271597	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	Factor VIII levels	25,897 European ancestry individuals, 4,500 African American individuals, 773 Asian ancestry individuals, 1,440 Hispanic individuals	NA	6p21.32	HLA-DQA1	rs9271597-A	0.42	6E-6	(EA)	0.0137	[0.0084-0.019] unit decrease	Affymetrix, Illumina [13887196] (imputed)	N
615	chr6_cox_hap2	4042026	4042027	rs9271597	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	Factor VIII levels	25,897 European ancestry individuals, 4,500 African American individuals, 773 Asian ancestry individuals, 1,440 Hispanic individuals	NA	6p21.32	HLA-DQA1	rs9271597-A	0.41	1E-8		0.0152	[0.0099-0.0205] unit decrease	Affymetrix, Illumina [13887196] (imputed)	N
615	chr6_cox_hap2	4042026	4042027	rs9271597	27723757	Jin Y	2016-11-01	Nat Genet	Genome-wide association studies of autoimmune vitiligo identify 23 new risk loci and highlight key pathways and regulatory variants.	Vitiligo	2,853 European ancestry cases and 37,405 European ancestry controls	1,827 European ancestry cases and 2,181 European ancestry controls	6p21.32	HLA-DRB1, HLA-DQA1	rs9271597-A	0.4269	3E-89		1.772	NR	Illumina [8966411] (imputed)	N
615	chr6_cox_hap2	4042049	4042049	rs144158892	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	6p21.32	HLA-DQA1	rs144158892-ATCT	0.504957	2E-12		0.015783602	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
615	chr6_cox_hap2	4042163	4042164	rs3129765	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	FSC-A on CD4+ T cell	3,113 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs3129765-G	0.75653	1E-10		0.2158	[0.15-0.28] unit decrease	Illumina [18030777] (imputed)	N
615	chr6_cox_hap2	4042183	4042184	rs9271605	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	6p21.32		rs9271605-A	0.35118	1E-6		0.034564	[0.021-0.049] unit increase	Affymetrix [15580782] (imputed)	N
615	chr6_cox_hap2	4042204	4042205	rs112396255	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs112396255-G	0.22	5E-9		4.5	[3.42-5.91]	Illumina [NR] (imputed)	N
615	chr6_cox_hap2	4042303	4042304	rs73728618	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs73728618-T	NR	6E-33		1.481	[1.389-1.58]	Affymetrix [7846216] (imputed)	N
615	chr6_cox_hap2	4042324	4042325	rs9271608	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	up to 92,771 European ancestry males, up to 113,387 European ancestry females	NA	6p21.32	HLA-DQA1	rs9271608-G	0.22	2E-17		0.042	[0.032-0.052] unit increase	Affymetrix, Illumina, Perlegen [2437193] (imputed)	N
615	chr6_cox_hap2	4042345	4042346	rs9271611	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	6p21.32	NR	rs9271611-G	0.41	5E-19		1.16	[1.12-1.2]	Illumina [8468885] (imputed)	N
615	chr6_cox_hap2	4042345	4042346	rs9271611	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Keratinocyte cancer (MTAG)	at least 18,538 European ancestry cases, at least 340,302 European ancestry controls	NA	6p21.32	HLA-DQA1	rs9271611-G	0.379011	2E-22		1.09	[1.07-1.11]	Affymetrix [7600000] (imputed)	N
615	chr6_cox_hap2	4042579	4042580	rs9271622	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	T cell Absolute Count	3,653 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9271622-A	0.7302	2E-10		0.2154	[0.15-0.28] unit increase	Illumina [18427377] (imputed)	N
615	chr6_cox_hap2	4042710	4042711	rs9271629	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Lymphocyte Absolute Count	3,653 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9271629-A	0.71717	2E-8		0.1945	[0.13-0.26] unit increase	Illumina [18427377] (imputed)	N
615	chr6_cox_hap2	4042921	4042922	rs9271640	25616667	Goris A	2015-01-22	Brain	Genetic variants are major determinants of CSF antibody levels in multiple sclerosis.	Oligoclonal band status in multiple sclerosis	2,232 European ancestry OCB positive individuals, 275 European ancestry OCB negative individuals, 439 OCB positive individuals, 80 OCB negative individuals	3,026 OCB positive individuals, 452 OCB negative individuals	6p21.32	HLA-DRB1	rs9271640-A	NR	5E-12		1.56	[1.38-1.77]	NR [485522]	N
615	chr6_cox_hap2	4042921	4042922	rs9271640	23472185	Mero IL	2013-03-05	PLoS One	Oligoclonal band status in Scandinavian multiple sclerosis patients is associated with specific genetic risk alleles.	Multiple sclerosis (OCB status)	1,367 European ancestry OCB positive cases, 161 European ancestry OCB negative cases, 428 European ancestry controls	NA	6p21.32	HLA-DQA1	rs9271640-?	NR	2E-20	(OCB positive vs. controls)	2.37	[1.97-2.84]	Illumina [495970]	N
615	chr6_cox_hap2	4042940	4042941	rs9271642	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in IDL	115,082 European ancestry individuals	NA	6p21.32		rs9271642-A	0.407279	2E-21		0.0389581	[0.031-0.047] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4042940	4042941	rs9271642	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	6p21.32		rs9271642-A	0.407279	9E-12		0.028651	[0.02-0.037] unit increase	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4042940	4042941	rs9271642	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6p21.32	HLA-DQA1	rs9271642-G	0.59407	9E-33		0.032831848	[0.027-0.038] unit increase	Affymetrix [93095623] (imputed)	N
615	chr6_cox_hap2	4045015	4045015	rs9281962	33143745	Andlauer TFM	2020-11-04	BMC Med	Treatment- and population-specific genetic risk factors for anti-drug antibodies against interferon-beta: a GWAS.	Binding antibody response to interferon beta therapy in multiple sclerosis (antibody levels; IFN?-1a subcutaneous)	up to 2,000 German and Swedish ancestry individuals	up to 757 German and Swedish ancestry individuals	6p21.32		rs9281962-T	0.44	5E-32		0.5091026	[0.42-0.59] unit increase	Illumina [8550834] (imputed)	N
615	chr6_cox_hap2	4045070	4045071	rs116352702	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs116352702-A	0.954	8E-18	(conditional)	0.543	[0.4-0.68]	Illumina [11270530] (imputed)	N
615	chr6_cox_hap2	4045509	4045510	rs3104389	32769997	Zhou W	2020-08-07	Nat Commun	GWAS of thyroid stimulating hormone highlights pleiotropic effects and inverse association with thyroid cancer.	Thyroid stimulating hormone levels	119,715 European ancestry individuals	NA	6p21.32	HLA-DRB1, HLA-DQA1	rs3104389-A	0.424293733420786	6E-12		0.0623	[0.045-0.08] SD increase	Illumina [22400000] (imputed)	N
615	chr6_cox_hap2	4045529	4045530	rs9271853	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C11orf87	5,363 Icelandic ancestry individuals	NA	6p21.32		rs9271853-T	0.3105	7E-12		0.135762	[0.097-0.175] unit decrease	Illumina [7506463] (imputed)	N
615	chr6_cox_hap2	4045625	4045626	rs9271858	23291585	Fakiola M	2013-01-06	Nat Genet	Common variants in the HLA-DRB1-HLA-DQA1 HLA class II region are associated with susceptibility to visceral leishmaniasis.	Leishmaniasis (visceral)	989 Indian ancestry cases, 1,089 Indian ancestry controls, 357 Brazilian ancestry cases, 1,613 Brazilian ancestry unaffected relatives	951 Indian ancestry cases, 990 Indian ancestry controls	6p21.32	HLA, HLA-DRB1, HLA-DQA1	rs9271858-G	0.39	3E-17		1.41	[1.30-1.52]	Illumina [521134]	N
615	chr6_cox_hap2	4045678	4045679	rs28362132	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CCL19	5,367 Icelandic ancestry individuals	NA	6p21.32		rs28362132-T	0.0511	8E-36		0.540362	[0.46-0.63] unit increase	Illumina [7506463] (imputed)	N
615	chr6_cox_hap2	4045976	4045977	rs9271880	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs9271880-C	NR	2E-10		0.0194381	[0.013-0.025] unit decrease	Affymetrix [319769] (imputed)	N
615	chr6_cox_hap2	4045976	4045977	rs9271880	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs9271880-C	NR	5E-10		0.0190783	[0.013-0.025] unit decrease	Affymetrix [319769] (imputed)	N
615	chr6_cox_hap2	4046924	4046925	rs9271925	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	6p21.32	HLA-DQA1	rs9271925-G	0.3014	3E-9		0.0266219	[0.018-0.035] unit decrease	Affymetrix [~ 2500000] (imputed)	N
615	chr6_cox_hap2	4047107	4047107	rs9281971	33143745	Andlauer TFM	2020-11-04	BMC Med	Treatment- and population-specific genetic risk factors for anti-drug antibodies against interferon-beta: a GWAS.	Neutralising antibody response to interferon beta therapy in multiple sclerosis (presence of antibodies; all treatment preparations)	up to 2,000 German and Swedish ancestry individuals	up to 757 German and Swedish ancestry individuals	6p21.32		rs9281971-TTTTTTT	0.36	2E-17		0.6	[-0.46--0.74] unit decrease	Illumina [8550834] (imputed)	N
615	chr6_cox_hap2	4047107	4047107	rs9281971	33143745	Andlauer TFM	2020-11-04	BMC Med	Treatment- and population-specific genetic risk factors for anti-drug antibodies against interferon-beta: a GWAS.	Neutralising antibody response to interferon beta therapy in multiple sclerosis (antibody titre; all treatment preparations)	up to 2,000 German and Swedish ancestry individuals	up to 757 German and Swedish ancestry individuals	6p21.32		rs9281971-TTTTTTT	NR	2E-17		0.16	[-0.12--0.2] unit decrease	Illumina [8550834] (imputed)	N
615	chr6_cox_hap2	4047404	4047405	rs3129769	26272072	Jiang X	2015-08-13	Rheumatology (Oxford)	An Immunochip-based interaction study of contrasting interaction effects with smoking in ACPA-positive versus ACPA-negative rheumatoid arthritis.	ACPA-positive rheumatoid arthritis (smoking interaction)	340 European ancestry never-smoker cases, 493 European ancestry ever-smoker cases, 746 European ancestry never-smoker controls, 994 European ancestry ever-smoker controls	187 European ancestry never-smoker cases, 421 European ancestry ever-smoker cases, 461 European ancestry never-smoker controls, 447 European ancestry ever-smoker controls	6p21.32	NR	rs3129769-?	NR	3E-11	(adjusted for HLA shared epitope)	1.724138	[1.33-2.44]	Illumina [133648] (imputed)	N
615	chr6_cox_hap2	4047470	4047471	rs13211653	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total esterified cholesterol levels	115,082 European ancestry individuals	NA	6p21.32		rs13211653-A	0.854201	3E-14		0.0430803	[0.032-0.054] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4047470	4047471	rs13211653	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol levels	115,082 European ancestry individuals	NA	6p21.32		rs13211653-A	0.854201	4E-15		0.0445562	[0.033-0.056] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4047470	4047471	rs13211653	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Sphingomyelin levels	115,006 European ancestry individuals	NA	6p21.32		rs13211653-A	0.854236	6E-9		0.0319032	[0.021-0.043] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4047477	4047478	rs9271947	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	6p21.32		rs9271947-T	NR	5E-12		0.0142	[0.01-0.018] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
615	chr6_cox_hap2	4047720	4047721	rs114798579	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	6p21.32	NR	rs114798579-?	NR	7E-19	(conditional)			Affymetrix [15688218] (imputed)	N
615	chr6_cox_hap2	4047814	4047815	rs140145058	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large LDL	115,082 European ancestry individuals	NA	6p21.32		rs140145058-A	0.864668	1E-15		0.0486929	[0.037-0.061] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4047814	4047815	rs140145058	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	LDL cholesterol levels	115,082 European ancestry individuals	NA	6p21.32		rs140145058-A	0.864668	7E-16		0.0494415	[0.037-0.061] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4047814	4047815	rs140145058	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large LDL	115,082 European ancestry individuals	NA	6p21.32		rs140145058-A	0.864668	1E-15		0.048909	[0.037-0.061] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4047814	4047815	rs140145058	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large LDL	115,082 European ancestry individuals	NA	6p21.32		rs140145058-A	0.864668	2E-15		0.0482138	[0.036-0.06] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4048411	4048412	rs146668528	29785011	Zhu Z	2018-05-21	Nat Genet	A genome-wide cross-trait analysis from UK Biobank highlights the shared genetic architecture of asthma and allergic diseases.	Allergic disease (asthma, hay fever or eczema)	25,685 European ancestry allergic diseases cases, 76,768 European ancestry controls	NA	6p21.32	HLA-DQA1	rs146668528-?	NR	5E-12		1.1904762	[1.12-1.25]	Affymetrix [74888535] (imputed)	N
615	chr6_cox_hap2	4048473	4048474	rs1281943	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs1281943-C	NR	2E-10		0.0328506	[0.023-0.043] unit increase	Affymetrix [321169] (imputed)	N
615	chr6_cox_hap2	4049456	4049457	rs9461780	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	6p21.32	HLA-DQA1	rs9461780-T	0.075286	3E-15		0.033892684	[0.025-0.042] unit increase	Affymetrix [93095623] (imputed)	N
615	chr6_cox_hap2	4049466	4049467	rs9272050	33794208	Bowden SJ	2021-04-01	Lancet Oncol	Genetic variation in cervical preinvasive and invasive disease: a genome-wide association study.	Cervical intraepithelial neoplasia grade 3 and invasive cervical cancer	764 European ancestry invasive cervical cancer cases, 4,005 European ancestry cervical intraepithelial neoplasia grade 3 cases, 145,545 European ancestry controls	NA	6p21.32	HLA-DQA1	rs9272050-?	NR	3E-28		1.27	[1.21-1.32]	Affymetrix [9600464] (imputed)	N
615	chr6_cox_hap2	4049466	4049467	rs9272050	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cervical cancer	6,563 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs9272050-G	NR	1E-39		1.267	NR	Affymetrix [7846216] (imputed)	N
615	chr6_cox_hap2	4049466	4049467	rs9272050	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p21.32	HLA-DRB1	rs9272050-G	0.38	1E-30		1.19	[1.17-1.21] unit increase	Illumina [at least 560000] (imputed)	N
615	chr6_cox_hap2	4049882	4049883	rs9272071	33143745	Andlauer TFM	2020-11-04	BMC Med	Treatment- and population-specific genetic risk factors for anti-drug antibodies against interferon-beta: a GWAS.	Binding antibody response to interferon beta therapy in multiple sclerosis (antibody levels; all treatment preparations)	up to 2,000 German and Swedish ancestry individuals	up to 757 German and Swedish ancestry individuals	6p21.32		rs9272071-C	0.32	5E-18		0.22615278	[-0.17--0.28] unit decrease	Illumina [8550834] (imputed)	N
615	chr6_cox_hap2	4050374	4050375	rs9272105	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	6p21.32	NR	rs9272105-?	NR	5E-12				Affymetrix [~ 8270000] (imputed)	N
615	chr6_cox_hap2	4050374	4050375	rs9272105	22807686	Li S	2012-07-12	PLoS Genet	GWAS identifies novel susceptibility loci on 6p21.32 and 21q21.3 for hepatocellular carcinoma in chronic hepatitis B virus carriers.	Hepatocellular carcinoma	1,538 Han Chinese ancestry HBV-positive HCC cases, 1,465 Han Chinese ancestry chronic HBV carriers	4,431 Han Chinese ancestry HBV-positive HCC cases, 4,725 Han Chinese ancestry chronic HBV carriers	6p21.32	HLA-DRB1, HLA-DQA1	rs9272105-A	0.45	5E-22		1.28	[1.22-1.35]	NR [523663]	N
615	chr6_cox_hap2	4050374	4050375	rs9272105	21502966	Weber F	2011-04-19	Pharmacogenomics J	Single-nucleotide polymorphisms in HLA- and non-HLA genes associated with the development of antibodies to interferon-? therapy in multiple sclerosis patients.	Response to interferon beta therapy	178 European ancestry antibody-positive individuals, 184 European ancestry antibody-negative individuals	350 European ancestry antibody-positive individuals, 468 European ancestry antibody-negative individuals	6p21.32	HLA-DRB1, HLA-DQA1	rs9272105-A	0.44	4E-10		0.26	[NR] unit increase	Illumina [~ 317000]	N
615	chr6_cox_hap2	4050378	4050379	rs3104376	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	6p21.32	Intergenic	rs3104376-T	NR	2E-28		0.0514741	[0.042-0.061] unit increase	Illumina [13520550] (imputed)	N
615	chr6_cox_hap2	4050432	4050433	rs35242582	28029757	Merkel PA	2016-12-28	Arthritis Rheumatol	Identification of Functional and Expression Polymorphisms Associated With Risk for Antineutrophil Cytoplasmic Autoantibody-Associated Vasculitis.	Antineutrophil cytoplasmic antibody-associated vasculitis	1,015 European ancestry granulomatosis with polyangiitis cases, 206 European ancestry microscopic polyangiitis cases, 3,258 European ancestry controls.	541 European ancestry granulomatosis with polyangiitis cases, 30 European ancestry microscopic polyangiitis cases, 1,465 European ancestry controls.	6p21.32	HLA-DQA1	rs35242582-A	0.74	6E-23		1.6	1.46-1.76	Affymetrix [at least 333035] (imputed)	N
615	chr6_cox_hap2	4050750	4050751	rs3104373	27386562	Andlauer TF	2016-06-17	Sci Adv	Novel multiple sclerosis susceptibility loci implicated in epigenetic regulation.	Multiple sclerosis	4,888 German ancestry cases, 10,395 German ancestry controls	2,903 Sardinian ancestry cases, 3,323 Sardinian ancestry controls	6p21.32	HLA-DRB1	rs3104373-T		1E-234		2.9	[2.72-3.09]	Illumina [at least 8143088] (imputed)	N
615	chr6_cox_hap2	4050779	4050780	rs9272116	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Creatinine levels	110,051 European ancestry individuals	NA	6p21.32		rs9272116-T	0.506915	1E-15		0.0282801	[0.021-0.035] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4050959	4050960	rs13214992	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	6p21.32	intergenic	rs13214992-A	0.0562	3E-29		0.1055	[0.087-0.124] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
615	chr6_cox_hap2	4051045	4051046	rs9272131	30450575	Hojfeldt SG	2018-11-18	Br J Haematol	Genetic predisposition to PEG-asparaginase hypersensitivity in children treated according to NOPHO ALL2008.	PEG-asparaginase hypersensitivity without enzyme activity in childhood acute lymphoblastic leukaemia	59 European ancestry cases, 772 European ancestry controls	NA	6p21.32	HLA-DQA1, HLA-DQB1, HLA-DRB1	rs9272131-T	0.11	9E-6		3.01	[1.85-4.91]	Illumina [NR]	N
615	chr6_cox_hap2	4051176	4051177	rs9272143	28806749	Leo PJ	2017-08-14	PLoS Genet	Defining the genetic susceptibility to cervical neoplasia-A genome-wide association study.	Cervical cancer	2,866 European ancestry cases, 6,481 European ancestry controls	NA	6p21.32	HLA-DRB1	rs9272143-?	NR	5E-15		1.3513513	[NR]	Illumina [10863230] (imputed)	N
615	chr6_cox_hap2	4051176	4051177	rs9272143	23482656	Chen D	2013-03-12	J Natl Cancer Inst	Genome-wide association study of susceptibility loci for cervical cancer.	Cervical cancer	1,034 European ancestry cases, 3,948 European ancestry controls	1,140 European ancestry cases, 1,058 European ancestry controls	6p21.32	HLA-DRB1, HLA-DQA1	rs9272143-?	NR	3E-22		1.49	[1.37-1.61]	Illumina [632668]	N
615	chr6_cox_hap2	4051392	4051393	rs9272154	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p21.32	NR	rs9272154-?	NR	9E-12		0.0937	[0.067-0.121] unit increase	Illumina [at least 560000] (imputed)	N
615	chr6_cox_hap2	4051661	4051662	rs72848251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs72848251-G	0.805325	4E-21		0.0493811	[0.039-0.06] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4051661	4051662	rs72848251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Remnant cholesterol (non-HDL, non-LDL -cholesterol)	115,082 European ancestry individuals	NA	6p21.32		rs72848251-G	0.805325	8E-20		0.0484938	[0.038-0.059] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4051661	4051662	rs72848251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of apolipoprotein B to apolipoprotein A1 levels	115,082 European ancestry individuals	NA	6p21.32		rs72848251-G	0.805325	6E-19		0.0468108	[0.036-0.057] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4051661	4051662	rs72848251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs72848251-G	0.805325	1E-22		0.0513513	[0.041-0.062] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4051661	4051662	rs72848251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs72848251-G	0.805325	2E-21		0.0496998	[0.039-0.06] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4051661	4051662	rs72848251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very small VLDL particles	115,082 European ancestry individuals	NA	6p21.32		rs72848251-G	0.805325	2E-20		0.048766	[0.038-0.059] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4051661	4051662	rs72848251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large LDL particles	115,082 European ancestry individuals	NA	6p21.32		rs72848251-G	0.805325	2E-23		0.0532642	[0.043-0.064] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4051661	4051662	rs72848251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of LDL particles	115,082 European ancestry individuals	NA	6p21.32		rs72848251-G	0.805325	2E-22		0.0522239	[0.042-0.063] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4051661	4051662	rs72848251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in VLDL	115,082 European ancestry individuals	NA	6p21.32		rs72848251-G	0.805325	4E-26		0.0566218	[0.046-0.067] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4051661	4051662	rs72848251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs72848251-G	0.805325	1E-17		0.0444632	[0.034-0.055] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4051661	4051662	rs72848251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	6p21.32		rs72848251-G	0.805325	4E-24		0.0541049	[0.044-0.065] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4051661	4051662	rs72848251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein B levels	115,082 European ancestry individuals	NA	6p21.32		rs72848251-G	0.805325	4E-22		0.0517157	[0.041-0.062] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4051661	4051662	rs72848251	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	6p21.32	HLA-DQA1	rs72848251-G	0.804518	1E-38		0.0349134	[0.03-0.04] unit decrease	Affymetrix [NR] (imputed)	N
615	chr6_cox_hap2	4052183	4052184	rs147841808	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in IDL	115,082 European ancestry individuals	NA	6p21.32		rs147841808-C	0.867699	2E-14		0.0459272	[0.034-0.058] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4052183	4052184	rs147841808	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large LDL	115,082 European ancestry individuals	NA	6p21.32		rs147841808-C	0.867699	2E-15		0.0492534	[0.037-0.061] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4052183	4052184	rs147841808	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in IDL	115,082 European ancestry individuals	NA	6p21.32		rs147841808-C	0.867699	8E-17		0.0499703	[0.038-0.062] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4052183	4052184	rs147841808	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small LDL	115,082 European ancestry individuals	NA	6p21.32		rs147841808-C	0.867699	2E-13		0.0454527	[0.033-0.058] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4052183	4052184	rs147841808	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large LDL	115,082 European ancestry individuals	NA	6p21.32		rs147841808-C	0.867699	3E-14		0.0463596	[0.034-0.058] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4052183	4052184	rs147841808	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in LDL	115,082 European ancestry individuals	NA	6p21.32		rs147841808-C	0.867699	3E-14		0.0468543	[0.035-0.059] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4052183	4052184	rs147841808	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in IDL	115,082 European ancestry individuals	NA	6p21.32		rs147841808-C	0.867699	4E-14		0.0455951	[0.034-0.057] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4052183	4052184	rs147841808	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Clinical LDL cholesterol levels	115,082 European ancestry individuals	NA	6p21.32		rs147841808-C	0.867699	4E-16		0.0503325	[0.038-0.062] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4052183	4052184	rs147841808	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium VLDL	115,082 European ancestry individuals	NA	6p21.32		rs147841808-C	0.867699	7E-22		0.0592176	[0.047-0.071] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4052183	4052184	rs147841808	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in IDL	115,082 European ancestry individuals	NA	6p21.32		rs147841808-C	0.867699	2E-12		0.0422918	[0.031-0.054] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4052183	4052184	rs147841808	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in IDL	115,082 European ancestry individuals	NA	6p21.32		rs147841808-C	0.867699	5E-13		0.0434275	[0.032-0.055] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4052329	4052330	rs553685714	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	6p21.32	HLA-DQA1	rs553685714-G	0.00566900000000004	5E-30		0.24839339	[0.21-0.29] unit increase	Affymetrix [93095623] (imputed)	N
615	chr6_cox_hap2	4052329	4052330	rs553685714	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	6p21.32	HLA-DQA1	rs553685714-G	0.005664	1E-34		0.2682929	[0.23-0.31] unit decrease	Affymetrix [93095623] (imputed)	N
615	chr6_cox_hap2	4052518	4052519	rs3104371	34536413	Daya M	2021-09-15	J Allergy Clin Immunol	Multi-ethnic genome-wide and HLA association study of total serum IgE.	IgE levels	5,008 African American individuals, 12,908 European ancestry individuals, 3,985 Hispanic individuals	NA	6p21.32		rs3104371-G	0.17	4E-18				Affymetrix, Illumina [NR] (imputed)	N
615	chr6_cox_hap2	4052650	4052651	rs9272219	32792643	Romero-Hidalgo S	2020-08-13	Sci Rep	Native American ancestry significantly contributes to neuromyelitis optica susceptibility in the admixed Mexican population.	Neuromyelitis optica	164 Mexican cases, 1,208 Mexican controls	NA	6p21.32	HLA-DQA1	rs9272219-A	0.42	8E-10		2.48	[1.86-3.32]	Illumina [252805]	N
615	chr6_cox_hap2	4052650	4052651	rs9272219	19571809	Shi J	2009-07-01	Nature	Common variants on chromosome 6p22.1 are associated with schizophrenia.	Schizophrenia	2,681 European ancestry cases, 2,653 European ancestry controls, 1,286 African American cases, 973 African American controls	5,327 European ancestry cases, 16,424 European ancestry controls	6p21.32	HLA-DQA1	rs9272219-G	0.72	7E-8	(EA)	1.14	[NR]	Affymetrix [up to 843798]	N
615	chr6_cox_hap2	4052777	4052778	rs9272226	34212547	An J	2021-07-01	Allergy Asthma Immunol Res	Genome-Wide Association Study of Korean Asthmatics: A Comparison With UK Asthmatics.	Adult asthma	1,386 Korean ancestry cases, 5,205 Korean ancestry controls	NA	6p21.32		rs9272226-C	0.43	6E-7		1.27	[1.16-1.4]	Affymetrix [4922160] (imputed)	N
615	chr6_cox_hap2	4052863	4052864	rs3104369	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CXCL2;CXCL3	5,366 Icelandic ancestry individuals	NA	6p21.32		rs3104369-T	0.3681	6E-26		0.203573	[0.17-0.24] unit increase	Illumina [7506463] (imputed)	N
615	chr6_cox_hap2	4052863	4052864	rs3104369	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD45RA+ CD8+ T cell Absolute Count	3,395 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs3104369-C	0.7732	1E-9		0.1747	[0.12-0.23] unit increase	Illumina [18332267] (imputed)	N
615	chr6_cox_hap2	4052863	4052864	rs3104369	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs3104369-?	NR	1E-11				Affymetrix [~ 8270000] (imputed)	N
615	chr6_cox_hap2	4052863	4052864	rs3104369	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Adult onset asthma or type 2 diabetes	33,418 European ancestry asthma cases, 393,186 European ancestry asthma controls, 159,208 European ancestry diabetes cases and controls	NA	6p21.32	NR	rs3104369-?	NR	9E-15				Affymetrix [up to 8270000] (imputed)	N
615	chr6_cox_hap2	4052864	4052865	rs17205170	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	6p21.32	HLA-DQA1	rs17205170-?	NR	1E-44		0.0464	[0.041-0.052] unit increase	Affymetrix [5701386] (imputed)	N
615	chr6_cox_hap2	4053012	4053013	rs17205212	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	334,468 European ancestry, NR ancestry individuals	NA	6p21.32		rs17205212-?	NR	5E-8				Affymetrix [NR] (imputed)	N
615	chr6_cox_hap2	4053047	4053047	rs139299944	33204752	Butler-Laporte G	2020-09-24	Open Forum Infect Dis	Genetic Determinants of Antibody-Mediated Immune Responses to Infectious Diseases Agents: A Genome-Wide and HLA Association Study.	Human herpes virus 7 U14 antibody levels	8,528 White British ancestry individuals	NA	6p21.32	HLA-DQA1	rs139299944-C	0.658	4E-12		0.11	[0.079-0.141] unit increase	NR [25472218] (imputed)	N
615	chr6_cox_hap2	4053171	4053172	rs9272242	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4 on Effector Memory CD4+ T cell	2,912 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9272242-C	0.6302	4E-12		0.2215	[0.16-0.28] unit increase	Illumina [17945888] (imputed)	N
615	chr6_cox_hap2	4053245	4053246	rs9272245	33794208	Bowden SJ	2021-04-01	Lancet Oncol	Genetic variation in cervical preinvasive and invasive disease: a genome-wide association study.	Cervical intraepithelial neoplasia grade 3	4,005 European ancestry cases, 145,545 European ancestry controls	NA	6p21.32	HLA-DQA1	rs9272245-?	NR	5E-12		1.44	[1.30-1.60]	Affymetrix [9600464] (imputed)	N
615	chr6_cox_hap2	4053380	4053381	rs2040406	20453840	Sanna S	2010-05-09	Nat Genet	Variants within the immunoregulatory CBLB gene are associated with multiple sclerosis.	Multiple sclerosis	882 Sardinian cases, 872 Sardinian controls	1,775 Sardinian cases, 2,005 Sardinian controls	6p21.32	HLA-DQB1, HLA-DRB	rs2040406-G	0.26	1E-20		2.05	[NR]	Affymetrix [6607266] (imputed)	N
615	chr6_cox_hap2	4053550	4053551	rs28393315	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	6p21.32		rs28393315-A	0.739	9E-22				Affymetrix [10369434] (imputed)	N
615	chr6_cox_hap2	4053668	4053669	rs9272263	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DQA1	rs9272263-C	NR	2E-12		0.0278269	[0.02-0.036] unit decrease	Affymetrix [323858] (imputed)	N
615	chr6_cox_hap2	4053668	4053669	rs9272263	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	HLA-DQA1	rs9272263-A	NR	6E-10		0.0226602	[0.015-0.03] unit decrease	Affymetrix [127266] (imputed)	N
615	chr6_cox_hap2	4053668	4053669	rs9272263	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p21.32	HLA-DQA1	rs9272263-C	NR	2E-8		0.0221565	[0.014-0.03] unit decrease	Affymetrix [323858] (imputed)	N
615	chr6_cox_hap2	4053694	4053695	rs62404084	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antihistamines for systemic use)	13,984 European ancestry cases, 137,652 European ancestry controls, 10,163 East Asian ancestry cases, 168,563 East Asian ancestry controls	NA	6p21.32		rs62404084-T	NR	5E-11		0.0852	[0.06-0.11] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
615	chr6_cox_hap2	4053694	4053695	rs62404084	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6p21.32	NR	rs62404084-C	0.8069	1E-43		1.1116052	[1.1-1.13]	Affymetrix [15688218] (imputed)	N
615	chr6_cox_hap2	4053857	4053858	rs3104367	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Asthma	28,399 European ancestry cases, 128,843 European ancestry controls	NA	6p21.32	HLA-DRB5, HLA-DQA1	rs3104367-?	NR	1E-40		1.1467891	[1.12-1.17]	Illumina [13747813] (imputed)	N
615	chr6_cox_hap2	4054185	4054186	rs1391371	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (glucocorticoids)	17,352 European ancestry cases, 188,348 European ancestry controls, 13,102 East Asian ancestry cases, 165,624 East Asian ancestry controls	NA	6p21.32		rs1391371-T	NR	1E-37		0.1229	[0.1-0.14] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
615	chr6_cox_hap2	4054185	4054186	rs1391371	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (glucocorticoids)	17,352 European ancestry cases, 188,348 European ancestry controls	NA	6p21.32	HLA-DQA1	rs1391371-T	0.202145	2E-48		0.20412196	[0.18-0.23] unit increase	Affymetrix [7288503] (imputed)	N
615	chr6_cox_hap2	4054185	4054186	rs1391371	30643255	Kristjansson RP	2019-01-14	Nat Genet	A loss-of-function variant in ALOX15 protects against nasal polyps and chronic rhinosinusitis.	Nasal polyps	86 European ancestry whole-genome sequenced cases, 4,280 European ancestry cases, 13,941 European ancestry whole-genome sequenced controls, 700,740 European ancestry controls	NA	6p21.32	HLA-DQA1	rs1391371-T	0.195	7E-49		1.47	[1.39-1.54]	Affymetrix, Illumina [up to 37123566] (imputed)	N
615	chr6_cox_hap2	4054185	4054186	rs1391371	30643255	Kristjansson RP	2019-01-14	Nat Genet	A loss-of-function variant in ALOX15 protects against nasal polyps and chronic rhinosinusitis.	Chronic rhinosinusitis	251 European ancestry whole-genome sequenced cases, 5,357 European ancestry cases, 13,957 European ancestry whole-genome sequenced controls, 746,129 European ancestry controls	NA	6p21.32	HLA-DQA1	rs1391371-T	0.195	4E-15		1.22	(1.16-1.28)	Affymetrix, Illumina [up to 37123566] (imputed)	N
615	chr6_cox_hap2	4054212	4054213	rs3129774	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	6p21.32		rs3129774-C	0.559887	9E-21		0.0390299	[0.031-0.047] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4054212	4054213	rs3129774	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs3129774-C	0.55995	2E-20		0.0386367	[0.03-0.047] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4054212	4054213	rs3129774	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6p21.32		rs3129774-C	0.55995	2E-20		0.0377974	[0.03-0.046] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4054212	4054213	rs3129774	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6p21.32		rs3129774-C	0.55995	7E-20		0.0378012	[0.03-0.046] unit increase	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4054212	4054213	rs3129774	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	6p21.32		rs3129774-C	0.559887	2E-21		0.0397338	[0.032-0.048] unit increase	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4054212	4054213	rs3129774	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6p21.32		rs3129774-C	0.55995	1E-18		0.0363057	[0.028-0.044] unit increase	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4054212	4054213	rs3129774	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	6p21.32		rs3129774-C	0.559887	1E-16		0.0342504	[0.026-0.042] unit increase	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4054212	4054213	rs3129774	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs3129774-C	0.55995	8E-20		0.0387931	[0.03-0.047] unit increase	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4054212	4054213	rs3129774	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6p21.32		rs3129774-C	0.55995	1E-19		0.0366269	[0.029-0.045] unit increase	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4054212	4054213	rs3129774	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	6p21.32		rs3129774-C	0.559954	9E-20		0.0375502	[0.029-0.046] unit increase	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4054212	4054213	rs3129774	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	6p21.32		rs3129774-C	0.559887	6E-19		0.0366323	[0.029-0.045] unit increase	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4054212	4054213	rs3129774	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs3129774-C	0.55995	8E-21		0.0392074	[0.031-0.047] unit increase	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4054212	4054213	rs3129774	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6p21.32		rs3129774-C	0.55995	6E-20		0.0370631	[0.029-0.045] unit increase	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4054212	4054213	rs3129774	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	6p21.32		rs3129774-C	0.559954	3E-17		0.0356128	[0.027-0.044] unit increase	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4054322	4054323	rs9272309	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	6p21.32	NR	rs9272309-A	0.620099	1E-19		0.0128993	[0.01-0.016] unit increase	Affymetrix [16578495] (imputed)	N
615	chr6_cox_hap2	4054758	4054759	rs9272346	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	6p21.32	HLA-DQA1	rs9272346-A	0.61	2E-156				NR [> 9500000] (imputed)	N
615	chr6_cox_hap2	4054758	4054759	rs9272346	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (childhood onset)	9,433 British ancestry cases, 318,237 British ancestry controls	NA	6p21.32	NR	rs9272346-A	0.59	4E-37		1.13		Affymetrix [10894596] (imputed)	N
615	chr6_cox_hap2	4054758	4054759	rs9272346	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (age of onset)	37,846 British ancestry individuals	NA	6p21.32	NR	rs9272346-A	0.59	7E-8				Affymetrix [10894596] (imputed)	N
615	chr6_cox_hap2	4054758	4054759	rs9272346	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (adult onset)	21,564 British ancestry cases, 318,237 British ancestry controls	NA	6p21.32	NR	rs9272346-A	0.59	2E-47		1.13		Affymetrix [10894596] (imputed)	N
615	chr6_cox_hap2	4054758	4054759	rs9272346	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls, 2,149 African ancestry cases, 6,055 African ancestry controls, 1,239 Japanese ancestry cases, 3,976 Japanese ancestry controls, 606 Latino cases, 792 Latino controls	NA	6p21.32	HLA-DRB1, HLA-DQA1	rs9272346-A	0.56	6E-24		1.16	[1.12-1.19]	Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
615	chr6_cox_hap2	4054758	4054759	rs9272346	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls	NA	6p21.32	HLA-DRB1, HLA-DQA1	rs9272346-A	0.56	2E-28		0.15	[0.13-0.17] unit increase	Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
615	chr6_cox_hap2	4054758	4054759	rs9272346	27130862	Sarnowski C	2016-04-06	J Allergy Clin Immunol	Identification of a new locus at 16q12 associated with time to asthma onset.	Asthma (time to onset)	5,462 European ancestry cases, 8,424 European ancestry controls	NA	6p21.32	HLA-DQA1	rs9272346-A	0.59	2E-8		1.13	[1.08-1.17]	Illumina [2387926] (imputed)	N
615	chr6_cox_hap2	4054758	4054759	rs9272346	23181788	Lasky-Su J	2012-12-04	Clin Exp Allergy	HLA-DQ strikes again: genome-wide association study further confirms HLA-DQ in the diagnosis of asthma among adults.	Asthma	Up to 1,238 European ancestry cases, up to 2,617 European ancestry controls	Up to 1,837 European ancestry cases, up to 3,803 European ancestry controls, up to 2,806 cases, up to 2,150 controls, up to 603 Costa Rican ancestry cases and their parents	6p21.32	HLA-DQA1	rs9272346-?	NR	2E-8	(Adult)			Affymetrix [455089]	N
615	chr6_cox_hap2	4054758	4054759	rs9272346	18978792	Cooper JD	2008-11-02	Nat Genet	Meta-analysis of genome-wide association study data identifies additional type 1 diabetes risk loci.	Type 1 diabetes	3,561 European ancestry cases, 4,646 European ancestry controls	6,225 European ancestry cases, 6,946 European ancestry controls, 3,064 European ancestry trios from 2,828 families	6p21.32	HLA	rs9272346-G	NR	6E-129				Affymetrix [up to 335565]	N
615	chr6_cox_hap2	4054758	4054759	rs9272346	17554300	Wellcome Trust Case Control Consortium	2007-06-07	Nature	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Type 1 diabetes	1,963 European ancestry cases, 2,938 European ancestry controls	(see Todd 2007)	6p21.32	MHC	rs9272346-G	0.61	5E-134		5.49	[4.83-6.24]	Affymetrix [469557]	N
615	chr6_cox_hap2	4055040	4055041	rs9272371	32737300	Sallah N	2020-07-31	Nat Commun	Distinct genetic architectures and environmental factors associate with host response to the ?2-herpesvirus infections.	Anti-Epstein-Barr virus nuclear antigen (EBNA) IgG levels	4,365 Ugandan ancestry individuals	2,162  European ancestry individuals	6p21.32	HLA-DQA1	rs9272371-C	0.3	4E-44	(Ugandan)	0.36	[0.32-0.40] unit decrease	Illumina [14929118] (imputed)	N
615	chr6_cox_hap2	4055040	4055041	rs9272371	29868224	Sallah N	2017-11-27	Glob Health Epidemiol Genom	Whole-genome association study of antibody response to Epstein-Barr virus in an African population: a pilot.	Epstein-Barr virus immune response (multivariate analysis)	1,473 Ugandan ancestry individuals	NA	6p21.32	HLA-DQA1	rs9272371-C	0.305	6E-21		0.36	[0.27-0.44] unit decrease	Illumina [~ 17000000] (imputed)	N
615	chr6_cox_hap2	4055040	4055041	rs9272371	29868224	Sallah N	2017-11-27	Glob Health Epidemiol Genom	Whole-genome association study of antibody response to Epstein-Barr virus in an African population: a pilot.	Epstein Barr virus nuclear antigen 1 IgG seropositivity	1,201 Ugandan ancestry cases, 361 Ugandan ancestry controls	NA	6p21.32	HLA-DQA1	rs9272371-?	0.695	4E-10		1.12	[1.08-1.16]	Illumina [~ 17000000] (imputed)	N
615	chr6_cox_hap2	4055040	4055041	rs9272371	29868224	Sallah N	2017-11-27	Glob Health Epidemiol Genom	Whole-genome association study of antibody response to Epstein-Barr virus in an African population: a pilot.	Epstein Barr virus nuclear antigen 1 IgG levels	1,473 Ugandan ancestry individuals, 2,162 European ancestry individuals	NA	6p21.32	HLA-DQA1	rs9272371-C	0.305	3E-17	(AA)	0.36	[0.26-0.42] unit decrease	Illumina [up to 17000000] (imputed)	N
615	chr6_cox_hap2	4055576	4055577	rs9272426	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PILRA	5,368 Icelandic ancestry individuals	NA	6p21.32		rs9272426-G	0.3435	2E-12		0.141419	[0.1-0.18] unit increase	Illumina [7506463] (imputed)	N
615	chr6_cox_hap2	4055576	4055577	rs9272426	32581359	Saevarsdottir S	2020-06-24	Nature	FLT3 stop mutation increases FLT3 ligand level and risk of autoimmune thyroid disease.	Autoimmune thyroid disease	30,234 European ancestry cases, 724,172 European ancestry controls	NA	6p21.32	HLA-DQA1	rs9272426-G	0.448	1E-196		1.31	[NR]	Affymetrix, Illumina [42900000] (imputed)	N
615	chr6_cox_hap2	4055576	4055577	rs9272426	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs9272426-?	NR	1E-33				Affymetrix [~ 8270000] (imputed)	N
615	chr6_cox_hap2	4055594	4055595	rs3187964	32421744	Gzara C	2020-05-18	PLoS Pathog	Family-based genome-wide association study of leprosy in Vietnam.	Leprosy	1,749 Vietnamese ancestry cases	1,181 Vietnamese ancestry cases, 688 Vietnamese ancestry controls	6p21.32	HLA-DQA1	rs3187964-C	0.41	8E-16		1.67	[1.55-1.80]	Illumina [5607170] (imputed)	N
615	chr6_cox_hap2	4055888	4055889	rs9272451	33549134	Adolphe C	2021-02-06	Genome Med	Genetic and functional interaction network analysis reveals global enrichment of regulatory T cell genes influencing basal cell carcinoma susceptibility.	Basal cell carcinoma	17,416 European ancestry cases, 375,455 European ancestry controls	NA	6p21.32	HLA-DQA1	rs9272451-G	0.386296	4E-21		0.10671105	[0.085-0.129] unit decrease	Affymetrix [7260263] (imputed)	N
615	chr6_cox_hap2	4055895	4055896	rs2213287	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	6p21.32		rs2213287-?	NR	5E-9		0.00544481	[0.0036-0.0073] unit decrease	NR [NR]	N
615	chr6_cox_hap2	4056276	4056277	rs2187668	28008999	Ostrowski J	2016-12-23	Sci Rep	Genetic architecture differences between pediatric and adult-onset inflammatory bowel diseases in the Polish population.	Ulcerative colitis	269 Polish ancestry child cases, 259 Polish ancestry adult cases, 582 Polish ancestry controls	121 Polish ancestry child cases, 85 Polish ancestry adult cases, 352 Polish ancestry controls	6p21.32	HLA-DQA1	rs2187668-?		4E-6	(Adults)	2.21266	[1.54-3.12]	Illumina [2612357]	N
615	chr6_cox_hap2	4056276	4056277	rs2187668	28008999	Ostrowski J	2016-12-23	Sci Rep	Genetic architecture differences between pediatric and adult-onset inflammatory bowel diseases in the Polish population.	Inflammatory bowel disease	622 Polish ancestry child cases, 496 Polish ancestry adult cases, 582 Polish ancestry controls	192 Polish ancestry child cases, 185 Polish ancestry adult cases, 352 Polish ancestry controls	6p21.32	HLA-DQA1	rs2187668-?	NR	2E-7	(Adult)	1.9647566	[1.52-2.56]	Illumina [2612357]	N
615	chr6_cox_hap2	4056276	4056277	rs2187668	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Diastolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	6p21.32	BAT2, BAT5	rs2187668-T	0.126	4E-11		0.372	[0.26-0.48] mm Hg decrease	Affymetrix, Illumina, Perlegen [128272]	N
615	chr6_cox_hap2	4056276	4056277	rs2187668	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Diastolic blood pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	6p21.32	HLA-DQB1	rs2187668-T	0.1281	8E-6		0.0258	unit decrease	Illumina [242296]	N
615	chr6_cox_hap2	4056276	4056277	rs2187668	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p21.32	HLA-DQA1	rs2187668-A	0.359	5E-36		3.4	[2.24-5.17]	Illumina [118177]	N
615	chr6_cox_hap2	4056276	4056277	rs2187668	26525574	Westerlind H	2015-11-02	Gut	Dense genotyping of immune-related loci identifies HLA variants associated with increased risk of collagenous colitis.	Collagenous colitis	247 European ancestry cases, 3969 European ancestry controls	67 European ancestry cases, 330 European ancestry controls	6p21.32	HLA	rs2187668-?	0.126	2E-11		2.06	[1.67-2.55]	Illumina [110634]	N
615	chr6_cox_hap2	4056276	4056277	rs2187668	26316170	Demirci FY	2015-08-28	Arthritis Rheumatol	Identification of a New Susceptibility Locus for Systemic Lupus Erythematosus on Chromosome 12 in Individuals of European Ancestry.	Systemic lupus erythematosus	661 European ancestry cases, 487 European ancestry controls	4,467 European ancestry cases, 9,114 European ancestry controls	6p21.32	HLA-DQA1	rs2187668-?	NR	1E-9				Affymetrix [up to 700598]	N
615	chr6_cox_hap2	4056276	4056277	rs2187668	25827949	Kunz M	2015-05-04	Exp Dermatol	Genome-wide association study identifies new susceptibility loci for cutaneous lupus erythematosus.	Cutaneous lupus erythematosus	151 European ancestry cases, 1,288 European ancestry controls	219 European ancestry cases, 262 European ancestry controls	6p21.32	HLA-DQA1	rs2187668-T	0.107	4E-10		2.93	[2.18-3.95]	Affymetrix [906600]	N
615	chr6_cox_hap2	4056276	4056277	rs2187668	24768677	de Boer YS	2014-04-23	Gastroenterology	Genome-wide association study identifies variants associated with autoimmune hepatitis type 1.	Autoimmune hepatitis type-1	649 European ancestry cases, 13,436 European ancestry controls	451 European ancestry cases, 4,103 European ancestry controls	6p21.32	HLA-DQA1	rs2187668-?	0.15	2E-78		2.9	[2.60-3.40]	Illumina [254006]	N
615	chr6_cox_hap2	4056276	4056277	rs2187668	21408207	Chung SA	2011-03-03	PLoS Genet	Differential genetic associations for systemic lupus erythematosus based on anti-dsDNA autoantibody production.	Systemic lupus erythematosus	811 anti-dsDNA positive European ancestry cases, 906 anti-dsDNA negative European ancestry cases, 4,813 European ancestry controls	NA	6p21.32	HLA-DR3	rs2187668-A	0.12	6E-28	(anti-dsDNA +)	2.23	[1.94-2.57]	Illumina [421318] (imputed)	N
615	chr6_cox_hap2	4056276	4056277	rs2187668	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.32	HLA-DQA1	rs2187668-A	0.1297	8E-93		4.32	[NR]	Illumina [242824]	N
615	chr6_cox_hap2	4056276	4056277	rs2187668	20694011	Ferreira RC	2010-08-08	Nat Genet	Association of IFIH1 and other autoimmunity risk alleles with selective IgA deficiency.	Immunoglobulin A	430 European ancestry cases, 1,090 European ancestry controls	342 European ancestry cases, 886 European ancestry controls	6p21.32	HLA-DRB1	rs2187668-A	0.13	2E-33		2.53	[2.17-2.95]	Illumina [2057134] (imputed)	N
615	chr6_cox_hap2	4056276	4056277	rs2187668	20190752	Dubois PC	2010-02-28	Nat Genet	Multiple common variants for celiac disease influencing immune gene expression.	Celiac disease	4,533 European ancestry cases, 10,750 European ancestry controls	4,918 European ancestry cases, 5,684 European ancestry controls	6p21.32	HLA-DQB1, HLA-DQA1	rs2187668-A	0.26	1E-50		6.23	[5.95-6.52]	Illumina [292387]	N
615	chr6_cox_hap2	4056276	4056277	rs2187668	18204098	Hom G	2008-01-20	N Engl J Med	Association of systemic lupus erythematosus with C8orf13-BLK and ITGAM-ITGAX.	Systemic lupus erythematosus	1,311 European ancestry cases, 3,340 European ancestry controls	793 European ancestry cases, 857 European ancestry controls	6p21.32	HLA-DQA1	rs2187668-A	0.11	3E-21				Illumina [502033]	N
615	chr6_cox_hap2	4056276	4056277	rs2187668	17558408	van Heel DA	2007-06-10	Nat Genet	A genome-wide association study for celiac disease identifies risk variants in the region harboring IL2 and IL21.	Celiac disease	778 European ancestry cases, 1,422 European ancestry controls	991 European ancestry cases, 1,489 European ancestry controls	6p21.32	HLA-DQA1	rs2187668-A	0.14	1E-19		7.04	[6.08-8.15]	Illumina [310605]	N
615	chr6_cox_hap2	4056706	4056707	rs9272505	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	334,944 European ancestry, NR ancestry individuals	NA	6p21.32		rs9272505-?	NR	5E-8				Affymetrix [NR] (imputed)	N
615	chr6_cox_hap2	4056871	4056872	rs9272521	33893285	Guindo-Martinez M	2021-04-23	Nat Commun	The impact of non-additive genetic associations on age-related complex diseases.	Asthma	9,209 European ancestry cases, 47,428 European ancestry controls	NA	6p21.32		rs9272521-A	0.436944	6E-15		1.15		Affymetrix [15607971] (imputed)	N
615	chr6_cox_hap2	4056968	4056969	rs28680981	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.32		rs28680981-G	0.738	3E-67				Affymetrix [10369434] (imputed)	N
615	chr6_cox_hap2	4057111	4057112	rs9272532	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.32		rs9272532-C	0.77	2E-33				Affymetrix [10369434] (imputed)	N
615	chr6_cox_hap2	4057221	4057222	rs9272535	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	6p21.32	HLA-DQA1	rs9272535-A	0.2454	6E-30		0.04727792	[0.039-0.055] unit decrease	Affymetrix [~ 2500000] (imputed)	N
615	chr6_cox_hap2	4057221	4057222	rs9272535	21131588	Slager SL	2010-12-03	Blood	Genome-wide association study identifies a novel susceptibility locus at 6p21.3 among familial CLL.	Chronic lymphocytic leukemia	407 European ancestry cases, 296 European ancestry controls	252 European ancestry cases, 965 European ancestry controls	6p21.32	HLA-DQA1	rs9272535-A	0.27	9E-8		1.61	[1.35-1.92]	Affymetrix [827777]	N
615	chr6_cox_hap2	4057340	4057341	rs9272544	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	6p21.32	HLA-DQA1	rs9272544-A	0.4858	8E-11		0.02325084	[0.016-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
615	chr6_cox_hap2	4057347	4057348	rs9272545	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6p21.32	NR	rs9272545-T	0.6122	1E-8		1.0357327	[1.02-1.05]	Affymetrix [15688218] (imputed)	N
615	chr6_cox_hap2	4057347	4057348	rs9272545	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	6p21.32	NR	rs9272545-?	NR	7E-288	(conditional)			Affymetrix [15688218] (imputed)	N
615	chr6_cox_hap2	4057374	4057375	rs28383364	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	6p21.32	BTNL2, C6orf10, HCG23, HLA-DOB, HLA-DQA1, HLA-DQA2, HLA-DQB1, HLA-DQB2, HLA-DRA, HLA-DRB1, HLA-DRB5, HLA-DRB6, TAP2	rs28383364-A	0.802222	3E-17		1.0942891	[1.07-1.12]	Affymetrix [8274727] (imputed)	N
615	chr6_cox_hap2	4057403	4057404	rs9272546	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	6p21.32		rs9272546-T	0.341931	9E-18		0.0373707	[0.029-0.046] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4057481	4057482	rs28802989	29036319	Qi H	2017-09-26	Hum Mol Genet	Discovery of susceptibility loci associated with tuberculosis in Han Chinese.	Tuberculosis	972 Chinese ancestry cases, 1,316 Gambian ancestry cases, 1,537 Chinese ancestry controls, 1,382 Gambian ancestry controls	NA	6p21.32	NR	rs28802989-?	NR	2E-6				Illumina [7333833] (imputed)	N
615	chr6_cox_hap2	4057629	4057630	rs9272566	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic glomerulonephritis	566 European ancestry cases, 475,255 European ancestry controls, 210 East Asian ancestry cases, 174,345 East Asian ancestry controls	NA	6p21.32		rs9272566-A	NR	3E-11		0.6694	[0.47-0.87] unit increase	Affymetrix, Illumina [25844108] (imputed)	N
615	chr6_cox_hap2	4057629	4057630	rs9272566	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.32		rs9272566-G	0.715	3E-45				Affymetrix [10369434] (imputed)	N
615	chr6_cox_hap2	4057704	4057705	rs28383380	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.32		rs28383380-C	0.652	2E-29				Affymetrix [10369434] (imputed)	N
615	chr6_cox_hap2	4057819	4057820	rs35248896	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs35248896-T	NR	7E-13		0.0255337	[0.019-0.033] unit increase	Affymetrix [319769] (imputed)	N
615	chr6_cox_hap2	4057819	4057820	rs35248896	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs35248896-T	NR	2E-12		0.0251292	[0.018-0.032] unit increase	Affymetrix [319769] (imputed)	N
615	chr6_cox_hap2	4057819	4057820	rs35248896	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs35248896-T	NR	7E-12		0.0246503	[0.018-0.032] unit increase	Affymetrix [321169] (imputed)	N
615	chr6_cox_hap2	4058418	4058419	rs9272624	34532061	Hodel F	2021-06-11	Virus Evol	Human genomics of the humoral immune response against polyomaviruses.	Human polyomavirus 6 VP1 antibody levels	5,094 European ancestry individuals	NA	6p21.32		rs9272624-?	NR	1E-13				Affymetrix [NR] (imputed)	N
615	chr6_cox_hap2	4058465	4058466	rs9272626	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	6p21.32		rs9272626-C	NR	7E-51		0.0361	[0.031-0.041] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
615	chr6_cox_hap2	4058671	4058672	rs117441922	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (immunosuppressants)	3,483 East Asian ancestry cases, 175,243 East Asian ancestry controls	NA	6p21.32		rs117441922-C	0.127734413	9E-73		0.7531444	[0.67-0.83] unit increase	Illumina [13134967] (imputed)	N
615	chr6_cox_hap2	4059208	4059209	rs4452681	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in LDL	115,082 European ancestry individuals	NA	6p21.32		rs4452681-C	0.85737	8E-16		0.0477326	[0.036-0.059] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4059208	4059209	rs4452681	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	6p21.32		rs4452681-C	0.85737	4E-14		0.0448685	[0.033-0.057] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4059208	4059209	rs4452681	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of IDL particles	115,082 European ancestry individuals	NA	6p21.32		rs4452681-C	0.85737	2E-15		0.0465836	[0.035-0.058] unit decrease	NR [11722792] (imputed)	N
615	chr6_cox_hap2	4059296	4059297	rs4455710	32041948	Sarin KY	2020-02-10	Nat Commun	Genome-wide meta-analysis identifies eight new susceptibility loci for cutaneous squamous cell carcinoma.	Cutaneous squamous cell carcinoma	19,149 European ancestry cases, 680,049 European ancestry controls	NA	6p21.32	HLA-DQA1	rs4455710-T	0.368	6E-21		0.14	[0.1-0.18] unit increase	NR [13607369] (imputed)	N
615	chr6_cox_hap2	4059296	4059297	rs4455710	26829030	Asgari MM	2016-01-29	J Invest Dermatol	Identification of Susceptibility Loci for Cutaneous Squamous Cell Carcinoma.	Squamous cell carcinoma	6,891 European ancestry cases, 54,566 European ancestry controls	810 European ancestry cases,  5,600 European ancestry controls	6p21.32	HLA-DQA1	rs4455710-T	0.38	2E-18		1.17	[1.13-1.21]	Affymetrix [9610468] (imputed)	N
615	chr6_cox_hap2	4059542	4059543	rs1129740	33909500	Moll M	2021-04-28	Am J Physiol Lung Cell Mol Physiol	A Systematic Analysis of Protein-altering Exonic Variants in Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease	up to 31,465 European ancestry cases, up to 203,688 European ancestry controls, up to 1,413 African ancestry cases, up to 6,080 African ancestry controls, up to 287 East Asian ancestry cases, up to 7,484 East Asian ancestry controls, up to 61 Hispanic cases, up to 613 Hispanic controls	NA	6p21.32	HLA-DQA1	rs1129740-A	0.59	1E-9		1.07	[1.04 -1.09]	Illumina [at least 109036]	N
615	chr6_cox_hap2	4059563	4059564	rs1071630	33328473	Ahluwalia TS	2020-12-16	Nat Commun	FUT2-ABO epistasis increases the risk of early childhood asthma and Streptococcus pneumoniae respiratory illnesses.	Childhood asthma with severe exacerbations	2,866 European ancestry cases,  65,415 European ancestry controls	NA	6p21.32	HLA-DQA1	rs1071630-C	NR	8E-14		1.25	[1.18-1.32]	Illumina [up to 525976] (imputed)	N
615	chr6_cox_hap2	4059629	4059630	rs1142323	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p21.32	HLA-DQA1	rs1142323-G		8E-51		0.036	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
615	chr6_cox_hap2	4059667	4059668	rs9272699	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	6p21.32		rs9272699-?	NR	2E-8		0.00587135	[0.0038-0.0079] unit increase	NR [NR]	N
615	chr6_cox_hap2	4059803	4059804	rs28383454	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	6p21.32	HLA-DQA1	rs28383454-T	0.537194	1E-143		1.1737434	[1.15939079874647-1.18827364549105]	NR [9572556] (imputed)	N
615	chr6_cox_hap2	4059803	4059804	rs28383454	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	6p21.32	HLA-DQA1	rs28383454-T	NR	2E-116		1.177	[1.16-1.19]	Affymetrix [9000000] (imputed)	N
615	chr6_cox_hap2	4060246	4060247	rs707951	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:0_[M+H]1+/Phosphatidylethanolamine_35:0_[M+H]1+/Phosphatidate_37:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	6p21.32		rs707951-T	NR	4E-10		0.0768107	[0.053-0.101] unit decrease	Affymetrix [87696910] (imputed)	N
615	chr6_cox_hap2	4060697	4060698	rs9272775	33143745	Andlauer TFM	2020-11-04	BMC Med	Treatment- and population-specific genetic risk factors for anti-drug antibodies against interferon-beta: a GWAS.	Neutralising antibody response to interferon beta therapy in multiple sclerosis (antibody titre; IFN?-1b subcutaneous)	up to 2,000 German and Swedish ancestry individuals	up to 757 German and Swedish ancestry individuals	6p21.32		rs9272775-C	0.23	3E-24		0.41	[0.33-0.49] unit increase	Illumina [8550834] (imputed)	N
615	chr6_cox_hap2	4060697	4060698	rs9272775	33143745	Andlauer TFM	2020-11-04	BMC Med	Treatment- and population-specific genetic risk factors for anti-drug antibodies against interferon-beta: a GWAS.	Binding antibody response to interferon beta therapy in multiple sclerosis (antibody levels; IFN?-1b subcutaneous)	up to 2,000 German and Swedish ancestry individuals	up to 757 German and Swedish ancestry individuals	6p21.32		rs9272775-C	NR	2E-19		0.40715143	[0.32-0.5] unit increase	Illumina [8550834] (imputed)	N
615	chr6_cox_hap2	4060789	4060790	rs9272780	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs9272780-A	NR	7E-11		0.0186986	[0.013-0.024] unit decrease	Affymetrix [321016] (imputed)	N
615	chr6_cox_hap2	4060789	4060790	rs9272780	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DQA1	rs9272780-A	NR	3E-14		0.0237876	[0.018-0.03] unit decrease	Affymetrix [323123] (imputed)	N
615	chr6_cox_hap2	4060789	4060790	rs9272780	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p21.32	HLA-DQA1	rs9272780-A	0.400343	1E-21		0.02813841	[0.022-0.034] unit increase	Affymetrix [93095623] (imputed)	N
615	chr6_cox_hap2	4060876	4060877	rs1048372	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	HLA-DQA1	rs1048372-C	0.609	5E-12	(Amelogenin, X isoform, AMELX.8578.45.3)	0.18	[0.12-0.24] unit increase	Affymetrix [10572788] (imputed)	N
615	chr6_cox_hap2	4060877	4060878	rs35087390	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	C-X-C motif chemokine 16 levels	21,758 European ancestry individuals	9,173 individuals	6p21.32		rs35087390-A	0.027	4E-18		0.2561	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
615	chr6_cox_hap2	4060885	4060886	rs1048381	33204752	Butler-Laporte G	2020-09-24	Open Forum Infect Dis	Genetic Determinants of Antibody-Mediated Immune Responses to Infectious Diseases Agents: A Genome-Wide and HLA Association Study.	Varicella zoster virus glycoproteins E and I antibody levels	7,595 White British ancestry individuals	NA	6p21.32	HLA-DQA1	rs1048381-G		6E-25		0.22	[0.18-0.26] unit decrease	NR [25472218] (imputed)	N
615	chr6_cox_hap2	4060901	4060902	rs9260	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DQA1	rs9260-A	NR	8E-14		0.0290366	[0.021-0.037] unit increase	Affymetrix [323123] (imputed)	N
615	chr6_cox_hap2	4061531	4061532	rs28538060	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.32		rs28538060-G	0.858	1E-17				Affymetrix [10369434] (imputed)	N
615	chr6_cox_hap2	4061750	4061751	rs9272975	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs9272975-A	0.217	1E-55	(HLA class II histocompatibility antigen, DQ alpha 2 chain, HLA.DQA2.7757.5.3)	0.52	[0.46-0.58] unit decrease	Affymetrix [10572788] (imputed)	N
615	chr6_cox_hap2	4061847	4061848	rs9272989	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	6p21.32		rs9272989-C	0.30783	5E-6		0.033104	[0.019-0.047] unit increase	Affymetrix [15580782] (imputed)	N
615	chr6_cox_hap2	4062073	4062074	rs9273012	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs9273012-?	NR	3E-16				Affymetrix [~ 8270000] (imputed)	N
615	chr6_cox_hap2	4062127	4062128	rs4526236	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hepatic cancer	2,122 East Asian ancestry cases, 159,201 East Asian ancestry controls	NA	6p21.32		rs4526236-A	0.174389152	5E-9		0.24874051	[0.17-0.33] unit decrease	Illumina [13427386] (imputed)	N
615	chr6_cox_hap2	4062400	4062401	rs9273039	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	6p21.32	HLA-DQA1	rs9273039-T	0.2667	1E-25		0.04249746	[0.035-0.05] unit decrease	Affymetrix [~ 2500000] (imputed)	N
615	chr6_cox_hap2	4062610	4062611	rs9273062	29534301	Nishida N	2018-03-13	Hepatology	Key HLA-DRB1-DQB1 haplotypes and role of the BTNL2 gene for response to a hepatitis B vaccine.	Response to hepatitis B vaccine	107 Japanese ancestry low responder individuals, 351 Japanese ancestry intermediate responder individuals, 735 Japanese ancestry high responder individuals	NA	6p21.32	HLA-DQB1	rs9273062-?		2E-10		0.165	unit increase	Affymetrix [427664]	N
615	chr6_cox_hap2	4062750	4062751	rs9273076	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	NA	6p21.32	HLA-DQ1	rs9273076-T		8E-13	(conditional)	1.3	[NR]	Illumina [> 644674] (imputed)	N
615	chr6_cox_hap2	4062846	4062847	rs6927022	33204752	Butler-Laporte G	2020-09-24	Open Forum Infect Dis	Genetic Determinants of Antibody-Mediated Immune Responses to Infectious Diseases Agents: A Genome-Wide and HLA Association Study.	Epstein-Barr virus EBNA-1 antibody levels	7,972 White British ancestry individuals	NA	6p21.32	HLA-DQA1	rs6927022-A	0.505	2E-76		0.3	[0.27-0.33] unit increase	NR [25472218] (imputed)	N
615	chr6_cox_hap2	4062846	4062847	rs6927022	32737300	Sallah N	2020-07-31	Nat Commun	Distinct genetic architectures and environmental factors associate with host response to the ?2-herpesvirus infections.	Anti-Epstein-Barr virus nuclear antigen (EBNA) IgG levels	4,365 Ugandan ancestry individuals	2,162  European ancestry individuals	6p21.32	HLA-DRB1	rs6927022-A	0.73	1E-21	(Ugandan)	0.26	[0.22-0.30] unit increase	Illumina [14929118] (imputed)	N
615	chr6_cox_hap2	4062846	4062847	rs6927022	32737300	Sallah N	2020-07-31	Nat Commun	Distinct genetic architectures and environmental factors associate with host response to the ?2-herpesvirus infections.	Anti-Epstein-Barr virus nuclear antigen (EBNA) IgG levels	4,365 Ugandan ancestry individuals	2,162  European ancestry individuals	6p21.32	HLA-DRB1	rs6927022-A	0.59	7E-26	(EA)	0.16	[0.16-0.16] unit increase	Illumina [14929118] (imputed)	N
615	chr6_cox_hap2	4062846	4062847	rs6927022	29868224	Sallah N	2017-11-27	Glob Health Epidemiol Genom	Whole-genome association study of antibody response to Epstein-Barr virus in an African population: a pilot.	Epstein Barr virus nuclear antigen 1 IgG levels	1,473 Ugandan ancestry individuals, 2,162 European ancestry individuals	NA	6p21.32	HLA-DRB1	rs6927022-A	0.59	7E-26	(EA)	0.16	[0.13-0.19] unit increase	Illumina [up to 17000000] (imputed)	N
615	chr6_cox_hap2	4062846	4062847	rs6927022	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Ulcerative colitis	12,366 European and unknown ancestry cases, 33,609 European and unknown ancestry controls	NA	6p21.32	C6orf15, CDSN, PSORS1C2, HCG27, HLA-C, HLA-B, MCCD1, ATP6V1G2, LTA, TNF, LTB, NCR3, AIF1, BAG6, C6orf47, GPANK1, LY6G5B, LY6G5C, LY6G6F, MEGT1, LY6G6E, LY6G6D, DDAH2, SAPCD1, HSPA1L, HSPA1B, C6orf48, NEU1, ZBTB12, NELFE, DXO, AL645922.1, CYP21A2, FKBPL, PRRT1, EGFL8, RNF5, AGER, PBX2, HLA-DRA, HLA-DQB1, HLA-DQA2, HLA-DQB2, PSORS1C1, CCHCR1, TCF19, POU5F1, MICA, MICB, DDX39B, ATP6V1G2-DDX39B, NFKBIL1, LST1, PRRC2A, APOM, CSNK2B, CSNK2B-LY6G5B-1181, ABHD16A, XXbac-BPG32J3.20, C6orf25, LY6G6C, CLIC1, VWA7, VARS, LSM2, HSPA1A, SLC44A4, C2, CFB, SKIV2L, STK19, C4A, C4B, TNXB, ATF6B, PPT2, PPT2-EGFL8, AGPAT1, GPSM3, NOTCH4, C6orf10, HLA-DRB5, HLA-DRB1, HLA-DQA1, MSH5, MSH5-SAPCD1, EHMT2, BTNL2	rs6927022-?		5E-65				Illumina [9578670] (imputed)	N
615	chr6_cox_hap2	4062846	4062847	rs6927022	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	6p21.32	C6orf15, CDSN, PSORS1C2, HCG27, HLA-C, HLA-B, MCCD1, ATP6V1G2, LTA, TNF, LTB, NCR3, AIF1, BAG6, C6orf47, GPANK1, LY6G5B, LY6G5C, LY6G6F, MEGT1, LY6G6E, LY6G6D, DDAH2, SAPCD1, HSPA1L, HSPA1B, C6orf48, NEU1, ZBTB12, NELFE, DXO, AL645922.1, CYP21A2, FKBPL, PRRT1, EGFL8, RNF5, AGER, PBX2, HLA-DRA, HLA-DQB1, HLA-DQA2, HLA-DQB2, PSORS1C1, CCHCR1, TCF19, POU5F1, MICA, MICB, DDX39B, ATP6V1G2-DDX39B, NFKBIL1, LST1, PRRC2A, APOM, CSNK2B, CSNK2B-LY6G5B-1181, ABHD16A, XXbac-BPG32J3.20, C6orf25, LY6G6C, CLIC1, VWA7, VARS, LSM2, HSPA1A, SLC44A4, C2, CFB, SKIV2L, STK19, C4A, C4B, TNXB, ATF6B, PPT2, PPT2-EGFL8, AGPAT1, GPSM3, NOTCH4, C6orf10, HLA-DRB5, HLA-DRB1, HLA-DQA1, MSH5, MSH5-SAPCD1, EHMT2, BTNL2	rs6927022-?		2E-31				Illumina [9725440] (imputed)	N
615	chr6_cox_hap2	4062846	4062847	rs6927022	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Ulcerative colitis	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls	6p21.32	HLA-DQB1, HLA-DRA, HLA-DRB1, HLA-DQA1	rs6927022-A	0.535	5E-133		1.444	[1.387-1.503]	Affymetrix, Illumina [1230000] (imputed)	N
615	chr6_cox_hap2	4062879	4062880	rs6926894	31959851	Olafsdottir TA	2020-01-20	Nat Commun	Eighty-eight variants highlight the role of T cell regulation and airway remodeling in asthma pathogenesis.	Asthma	16,247 European ancestry cases, 346,486 European ancestry controls, 52,942 cases, 355,713 controls	NA	6p21.32	HLA-DQA1, HLA-DQB1, HLA-DRB1, HLA-DRB6, HLA-DQA2, MIR3135B	rs6926894-C	0.59076	2E-126		1.16642	[1.15-1.18]	Affymetrix [32463443] (imputed)	N
615	chr6_cox_hap2	4062879	4062880	rs6926894	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	6p21.32	HLA-DQA1, HLA-DQB1	rs6926894-T	0.4094	2E-100				Affymetrix [15688218] (imputed)	N
615	chr6_cox_hap2	4062909	4062910	rs200930495	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs200930495-A	0.148	5E-31	(Complement C4, C4A.C4B.4481.34.2)	0.45	[0.37-0.53] unit increase	Affymetrix [10572788] (imputed)	N
615	chr6_cox_hap2	4063102	4063103	rs9273113	32141793	Garman L	2020-03-06	Ocul Immunol Inflamm	Genome-Wide Association Study of Ocular Sarcoidosis Confirms HLA Associations and Implicates Barrier Function and Autoimmunity in African Americans.	Ocular sarcoidosis	260 African American cases, 1,551 African American controls	NA	6p21.32	NR	rs9273113-A	NR	6E-6		1.57	[1.29-1.91]	Illumina [13976150] (imputed)	N
615	chr6_cox_hap2	4063180	4063181	rs9273123	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	6p21.32	HLA-DQA1	rs9273123-A	NR	4E-105		1.187	[1.17-1.2]	Affymetrix [9000000] (imputed)	N
616	chr6_cox_hap2	4063748	4063749	rs9273177	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.32	HLA-DQA1, HLA-DQB1	rs9273177-?		1E-13		1.1363636	[1.1-1.16]	Affymetrix, Illumina [NR]	N
616	chr6_cox_hap2	4063866	4063867	rs9273190	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs9273190-A	0.364	1E-54	(conditional)	1.79	[1.72-1.86]	Illumina [11270530] (imputed)	N
616	chr6_cox_hap2	4070656	4070657	rs3998178	33574239	Eriksson D	2021-02-11	Nat Commun	GWAS for autoimmune Addison's disease identifies multiple risk loci and highlights AIRE in disease susceptibility.	Addison's disease	1,223 European ancestry cases, 4,097 European ancestry controls	NA	6p21.32	HLA-DQB1	rs3998178-T	0.19	4E-179		5.98	[5.29-6.76]	Illumina [7068382] (imputed)	N
616	chr6_cox_hap2	4071148	4071149	rs9273349	20860503	Moffatt MF	2010-09-23	N Engl J Med	A large-scale, consortium-based genomewide association study of asthma.	Asthma	10,365 cases, 16,110 controls	NA	6p21.32	HLA-DQ	rs9273349-C	0.58	7E-14		1.18	[1.13-1.24]	Illumina [582892]	N
616	chr6_cox_hap2	4071294	4071295	rs6905282	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (multivariate analysis)	477,968 European ancestry individuals	NA	6p21.32	HLA, DQA1, DQB1	rs6905282-A	0.466	5E-28		0.05	[0.04-0.06] unit decrease	NR [NR] (imputed)	N
616	chr6_cox_hap2	4071294	4071295	rs6905282	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (age of onset)	117,130 European ancestry individuals	NA	6p21.32	HLA-DQA1, HLA-DQB1	rs6905282-A	0.466	1E-23		0.042	[0.034-0.05] unit decrease	NR [7647814] (imputed)	N
616	chr6_cox_hap2	4071319	4071320	rs4713570	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Malignant lymphoma	3,546 European ancestry cases, 487,257 European ancestry controls, 335 East Asian ancestry cases, 177,342 East Asian ancestry controls	NA	6p21.32		rs4713570-T	NR	1E-16		0.2256	[0.17-0.28] unit increase	Affymetrix, Illumina [25845276] (imputed)	N
616	chr6_cox_hap2	4071409	4071410	rs7744020	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic rhinitis	18,915 European ancestry cases, 239,773 European ancestry controls	NA	6p21.32	HLA-DQB1	rs7744020-A	0.3071	4E-25		1.131	[1.106-1.157]	Affymetrix [15688218] (imputed)	N
616	chr6_cox_hap2	4071409	4071410	rs7744020	24204295	Han F	2013-10-31	PLoS Genet	Genome wide analysis of narcolepsy in China implicates novel immune loci and reveals changes in association prior to versus after the 2009 H1N1 influenza pandemic.	Narcolepsy (age of onset)	at least 1,000 Chinese ancestry cases	NA	6p21.32	NR	rs7744020-A	0.272	8E-9		1.9	year decrease	Affymetrix [603382]	N
616	chr6_cox_hap2	4071528	4071529	rs6928482	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals, at least 88,461 European ancestry individuals	NA	6p21.32	HLA-DQB1	rs6928482-T	0.542	1E-6	(EA)	0.018571429	[0.011-0.026] unit increase	Illumina [1986983] (imputed)	N
616	chr6_cox_hap2	4071551	4071552	rs9273363	30659077	Onengut-Gumuscu S	2019-01-18	Diabetes Care	Type 1 Diabetes Risk in African-Ancestry Participants and Utility of an Ancestry-Specific Genetic Risk Score.	Type 1 diabetes	1,021 African American cases, 2,928 African American controls	NA	6p21.32	MHC	rs9273363-A	0.13	5E-138		5.48	[4.80-6.27]	Illumina [114874]	N
616	chr6_cox_hap2	4071551	4071552	rs9273363	23770605	Berndt SI	2013-06-16	Nat Genet	Genome-wide association study identifies multiple risk loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	2,179 European ancestry cases, 6,221 European ancestry controls	1,709 European ancestry cases, 6,318 European ancestry controls	6p21.32	HLA	rs9273363-A	0.27	2E-10		1.24	[NR]	Illumina [549934]	N
616	chr6_cox_hap2	4071581	4071582	rs9273364	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Carpal tunnel syndrome	18,855 European ancestry cases, 461,346 European ancestry controls, 192 East Asian ancestry cases, 178,534 East Asian ancestry controls	NA	6p21.32		rs9273364-G	NR	1E-8		0.0702	[0.046-0.094] unit increase	Affymetrix, Illumina [25844227] (imputed)	N
616	chr6_cox_hap2	4071581	4071582	rs9273364	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 29,0641 European ancestry controls	NA	6p21.32	HLA-DQB1	rs9273364-G	0.302909	3E-75		0.23193699	[0.21-0.26] unit increase	Affymetrix [7288503] (imputed)	N
616	chr6_cox_hap2	4071590	4071591	rs6906021	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Angiopoietin-1 receptor levels	21,758 European ancestry individuals	9,173 individuals	6p21.32		rs6906021-T	0.56	8E-14		0.0626	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
616	chr6_cox_hap2	4071590	4071591	rs6906021	23817571	Bonnelykke K	2013-06-30	Nat Genet	Meta-analysis of genome-wide association studies identifies ten loci influencing allergic sensitization.	Allergic sensitization	5,789 European ancestry cases, 10,056 European ancestry controls	6,114 European ancestry cases, 9,920 European ancestry controls	6p21.32	HLA-DQB1, HLA-DQA1	rs6906021-C	0.45	2E-12		1.15	[1.11-1.2]	Affymetrix, Illumina [~ 2500000] (imputed)	N
616	chr6_cox_hap2	4071590	4071591	rs6906021	23817569	Hinds DA	2013-06-30	Nat Genet	A genome-wide association meta-analysis of self-reported allergy identifies shared and allergy-specific susceptibility loci.	Self-reported allergy	53,862 European ancestry individuals	NA	6p21.32	HLA-DQB1, HLA-DQA1	rs6906021-C	0.4749	7E-15		0.0945	[0.071-0.118] unit increase	Illumina [2400000] (imputed)	N
616	chr6_cox_hap2	4071627	4071628	rs28407950	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6p21.32	NR	rs28407950-C	0.7564	7E-45		1.1032656	[1.09-1.12]	Affymetrix [15688218] (imputed)	N
616	chr6_cox_hap2	4071627	4071628	rs28407950	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic disease (asthma, hay fever or eczema)	106,772 European ancestry cases, 239,773 European ancestry controls	83,335 cases, 34,934 controls	6p21.32	NR	rs28407950-C	0.7564	7E-70		1.1201972	[1.11-1.13]	Affymetrix [15688218] (imputed)	N
616	chr6_cox_hap2	4071627	4071628	rs28407950	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (childhood onset)	9,433 British ancestry cases, 318,237 British ancestry controls	NA	6p21.32	HLA-DQA1, HLA-DQB	rs28407950-C	0.756	1E-59		1.354	[1.306-1.405]	Affymetrix [10894596] (imputed)	N
616	chr6_cox_hap2	4071627	4071628	rs28407950	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (adult onset)	21,564 British ancestry cases, 318,237 British ancestry controls	NA	6p21.32	HLA-DQA1, HLA-DQB	rs28407950-C	0.756	8E-31		1.148	[1.121-1.175]	Affymetrix [10894596] (imputed)	N
616	chr6_cox_hap2	4071627	4071628	rs28407950	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (antihistamines for systemic use)	13,984 European ancestry cases, 137,652 European ancestry controls	NA	6p21.32	HLA-DQB1	rs28407950-T	0.243266	1E-10		0.094664484	[0.066-0.123] unit decrease	Affymetrix [7288503] (imputed)	N
616	chr6_cox_hap2	4071682	4071683	rs34004019	30013184	Waage J	2018-07-16	Nat Genet	Genome-wide association and HLA fine-mapping studies identify risk loci and genetic pathways underlying allergic rhinitis.	Allergic rhinitis	59,762 European and unknown ancestry cases, 152,358 European and unknown ancestry controls	60,720 European ancestry cases, 618,527 European ancestry controls	6p21.32	HLA-DQB1, HLA-DQA1	rs34004019-A	0.7331	1E-30		1.1235955	[1.11-1.15]	Affymetrix, Illumina, Perlegen [16531985] (imputed)	N
616	chr6_cox_hap2	4071682	4071683	rs34004019	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	6p21.32	HLA-DQA1, HLA-DQB1	rs34004019-A	0.7	4E-52		1.101	[1.09-1.11]	Affymetrix, Illumina [8307659] (imputed)	N
616	chr6_cox_hap2	4071682	4071683	rs34004019	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Allergy	66,973 European ancestry cases, 113,768 European ancestry controls	NA	6p21.32	HLA-DQB1, HLA-DQA1	rs34004019-?	NR	3E-24		1.1086475	[1.09-1.13]	Illumina [12845910] (imputed)	N
616	chr6_cox_hap2	4071717	4071718	rs9273367	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 1 diabetes	6,447 European ancestry cases, 451,248 European ancestry controls, 1,219 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	6p21.32		rs9273367-T	NR	6E-306		0.7272	[0.69-0.77] unit increase	Affymetrix, Illumina [25837106] (imputed)	N
616	chr6_cox_hap2	4071730	4071731	rs28414666	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	6p21.32		rs28414666-A	0.134651377	2E-27		0.1486309	[0.12-0.18] unit increase	Illumina [13429980] (imputed)	N
616	chr6_cox_hap2	4071754	4071755	rs9273368	34737425	Mansour Aly D	2021-11-04	Nat Genet	Genome-wide association analyses highlight etiological differences underlying newly defined subtypes of diabetes.	Severe autoimmune type 2 diabetes	452 Scandinavian ancestry cases, 2,744 Scandinavian ancestry controls	NA	6p21.32	HLA-DQA1, HLA-DQB1	rs9273368-A	0.350323	7E-40		2.678	[2.314 - 3.1]	Illumina [5396854] (imputed)	N
616	chr6_cox_hap2	4071754	4071755	rs9273368	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	6p21.32		rs9273368-A	NR	2E-49		0.1157	[0.1-0.13] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
616	chr6_cox_hap2	4071754	4071755	rs9273368	30254083	Cousminer DL	2018-09-25	Diabetes Care	First Genome-Wide Association Study of Latent Autoimmune Diabetes in Adults Reveals Novel Insights Linking Immune and Metabolic Diabetes.	Latent autoimmune diabetes vs. type 2 diabetes	2,779 European ancestry latent autoimmune diabetes cases, 10,396 European ancestry type 2 diabetes cases	NA	6p21.32	HLA-DQB1	rs9273368-?	0.301	3E-78		2.439	[2.222-2.676]	Affymetrix, Illumina [8328843] (imputed)	N
616	chr6_cox_hap2	4071754	4071755	rs9273368	30254083	Cousminer DL	2018-09-25	Diabetes Care	First Genome-Wide Association Study of Latent Autoimmune Diabetes in Adults Reveals Novel Insights Linking Immune and Metabolic Diabetes.	Latent autoimmune diabetes vs. type 1 diabetes	2,454 European ancestry latent autoimmune diabetes cases, 968 European ancestry type 1 diabetes cases	NA	6p21.32	HLA-DQB1	rs9273368-G	0.35	8E-40		2.99	[2.60-3.91]	Affymetrix, Illumina [8465706] (imputed)	N
616	chr6_cox_hap2	4071771	4071772	rs9273370	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Hypothyroidism	17,558 European ancestry cases, 117,083 European ancestry controls	NA	6p21.32	HLA-DQA1, HLA-DQB1	rs9273370-?	NR	5E-34		1.1737089	[1.14-1.20]	Illumina [13676411] (imputed)	N
616	chr6_cox_hap2	4071853	4071854	rs28539606	33731350	Nandakumar P	2021-03-17	Sci Adv	Nuclear genome-wide associations with mitochondrial heteroplasmy.	Mitochondrial heteroplasmy measurement	982,072 European ancestry individuals	NA	6p21.32	HLA-DQB1	rs28539606-G	0.147	4E-23		0.02	[0.016-0.024] unit increase	NR [57525634] (imputed)	N
616	chr6_cox_hap2	4071878	4071879	rs9273373	24388013	Ferreira MA	2013-12-30	J Allergy Clin Immunol	Genome-wide association analysis identifies 11 risk variants associated with the asthma with hay fever phenotype.	Asthma and hay fever	6,685 European ancestry cases, 14,091 European ancestry controls	878 European ancestry cases, 2,455 European ancestry controls	6p21.32	HLA-DQB1	rs9273373-G	0.54	4E-14		1.24	[1.17-1.30]	Illumina [up to 4972397] (imputed)	N
616	chr6_cox_hap2	4071891	4071892	rs9273374	29785011	Zhu Z	2018-05-21	Nat Genet	A genome-wide cross-trait analysis from UK Biobank highlights the shared genetic architecture of asthma and allergic diseases.	Asthma or allergic disease (pleiotropy)	14,085 European asthma cases, 25,685 European ancestry allergic diseases cases, 76,768 European ancestry controls	NA	6p21.32	HLA-DOB, HLA-DQA1, HLA-DQA2, HLA-DQB1, HLA-DQB2, HLA-DRB1, HLA-DRB6, TAP2	rs9273374-?	NR	8E-35		1.1904762		NR [74888535] (imputed)	N
616	chr6_cox_hap2	4072016	4072017	rs12055445	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQB1	rs12055445-A	NR	2E-8		0.0159074	[0.01-0.021] unit increase	Affymetrix [321016] (imputed)	N
616	chr6_cox_hap2	4072016	4072017	rs12055445	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DQB1	rs12055445-G	NR	1E-12		0.0218742	[0.016-0.028] unit decrease	Affymetrix [323123] (imputed)	N
616	chr6_cox_hap2	4072016	4072017	rs12055445	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	6p21.32	NR	rs12055445-A	0.500659	5E-18		0.0175207	[0.014-0.021] unit decrease	NR [NR]	N
616	chr6_cox_hap2	4072016	4072017	rs12055445	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling worry	372,869 European ancestry individuals	NA	6p21.32	HLA-DRA	rs12055445-A	0.498063	3E-12		6.996	unit decrease	NR [10847151] (imputed)	N
616	chr6_cox_hap2	4072016	4072017	rs12055445	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	6p21.32	HLA-DQA1, HLA-DQB1	rs12055445-G	0.513	6E-11		0.0247074	[0.017-0.032] unit decrease	Illumina [13519193] (imputed)	N
616	chr6_cox_hap2	4072063	4072064	rs9273375	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DQB1	rs9273375-G	NR	9E-11		0.0262281	[0.018-0.034] unit increase	Affymetrix [323123] (imputed)	N
616	chr6_cox_hap2	4072154	4072155	rs9273379	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Alanine aminotransferase levels in excessive alcohol consumption	951 individuals	NA	6p21.32	NR	rs9273379-?	NR	2E-6		0.0267	[0.016-0.038] unit decrease	Illumina [~ 7800000] (imputed)	N
616	chr6_cox_hap2	4072225	4072226	rs4713572	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs4713572-C	0.411	2E-15	(Rac GTPase-activating protein 1, RACGAP1.13587.10.3)	0.21	[0.15-0.27] unit increase	Affymetrix [10572788] (imputed)	N
616	chr6_cox_hap2	4072250	4072251	rs9273386	34103634	Valette K	2021-06-08	Commun Biol	Prioritization of candidate causal genes for asthma in susceptibility loci derived from UK Biobank.	Asthma	56,167 White-British ancestry cases, 352,255 White-British ancestry controls	NA	6p21.32	HLA-DQA1, HLA-DQB1	rs9273386-C	0.588625259859572	2E-48		0.13383532	[0.12-0.15] unit increase	Affymetrix [35186738] (imputed)	N
616	chr6_cox_hap2	4072257	4072258	rs4713573	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Juvenile rheumatoid arthritis	216 European ancestry cases, 409,001 European ancestry controls, 110 East Asian ancestry cases, 173,268 East Asian ancestry controls	NA	6p21.32		rs4713573-C	NR	3E-9		0.5903	[0.39-0.79] unit increase	Affymetrix, Illumina [25833140] (imputed)	N
616	chr6_cox_hap2	4072362	4072363	rs28724231	30552173	Aterido A	2018-12-14	Ann Rheum Dis	Genetic variation at the glycosaminoglycan metabolism pathway contributes to the risk of psoriatic arthritis but not psoriasis.	Psoriatic arthritis	744 Spanish ancestry cases, 1,454 Spanish ancestry controls	1,430 cases, 1,417 controls	6p21.32	NR	rs28724231-?	NR	4E-11		6.62	[NR] z-score decrease	Illumina [1387382] (imputed)	N
616	chr6_cox_hap2	4072398	4072399	rs9273401	27189021	Cook JP	2016-05-18	Eur J Hum Genet	Multi-ethnic genome-wide association study identifies novel locus for type 2 diabetes susceptibility.	Type 2 diabetes	746 African American cases, 2,825 African American controls, 743 East Asian ancestry cases, 3,992 East Asian ancestry controls, 7,111 European ancestry cases, 49,688 European ancestry controls, 1,147 Latino cases, 5,352 Latino controls	12,171 European ancestry cases, 56,862 European ancestry controls	6p21.32	MHC	rs9273401-G	0.112	2E-9		1.16	[1.11-1.22]	NR [at least 8497425] (imputed)	N
616	chr6_cox_hap2	4072429	4072430	rs9273404	31816047	Boutin TS	2019-12-09	Hum Mol Genet	Insights into the genetic basis of retinal detachment.	Cataracts (operation)	21,679 British ancestry cases, 387,283 British ancestry controls	NA	6p21.32	HLA-DQB1	rs9273404-?	0.469	3E-8		1.0600239	[1.04-1.08]	Affymetrix [NR] (imputed)	N
616	chr6_cox_hap2	4072429	4072430	rs9273404	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	6p21.32	HLA-DQB1	rs9273404-G	0.47	2E-11	(conditional on rs2070600)	1.08	[NR]	Affymetrix, Illumina [6224355] (imputed)	N
616	chr6_cox_hap2	4072519	4072520	rs9273410	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p21.32	NR	rs9273410-A	0.44	7E-16		1.15	[1.11-1.19]	Affymetrix [9886854] (imputed)	N
616	chr6_cox_hap2	4072519	4072520	rs9273410	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p21.32	NR	rs9273410-A	0.44	3E-22			[NR]	Affymetrix [9886854] (imputed)	N
616	chr6_cox_hap2	4072519	4072520	rs9273410	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p21.32	NR	rs9273410-A	0.44	2E-21		1.13	[1.1-1.16]	Affymetrix [9886854] (imputed)	N
616	chr6_cox_hap2	4072519	4072520	rs9273410	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p21.32	NR	rs9273410-A	0.44	7E-22			[NR]	Affymetrix [9886854] (imputed)	N
616	chr6_cox_hap2	4072519	4072520	rs9273410	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in non-current smokers	16,488 European ancestry cases, 169,688 European ancestry controls	NA	6p21.32	NR	rs9273410-A	0.44	3E-21		1.13	[1.1-1.16]	Affymetrix [9886854] (imputed)	N
616	chr6_cox_hap2	4072519	4072520	rs9273410	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in never smokers	8,631 European ancestry cases, 120,544 European ancestry controls	NA	6p21.32	NR	rs9273410-A	0.44	9E-16		1.15	[1.11-1.19]	Affymetrix [9886854] (imputed)	N
616	chr6_cox_hap2	4072519	4072520	rs9273410	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in ever smokers	12,446 European ancestry cases, 59,145 European ancestry controls	NA	6p21.32	NR	rs9273410-A	0.44	3E-9		1.1	[1.06-1.13]	Affymetrix [9886854] (imputed)	N
616	chr6_cox_hap2	4072519	4072520	rs9273410	30552067	Shrine N	2018-12-11	Lancet Respir Med	Moderate-to-severe asthma in individuals of European ancestry: a genome-wide association study.	Asthma (moderate or severe)	5,135 European ancestry cases, 25,675 European ancestry controls	5,414 European ancestry cases, 21,471 European ancestry controls	6p21.32	HLA-DQB1	rs9273410-A	0.5529999999999999	6E-32		1.21	[1.17-1.25]	Affymetrix [33771858] (imputed)	N
616	chr6_cox_hap2	4072725	4072726	rs9273429	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQB1	rs9273429-G	NR	6E-9		0.0188118	[0.012-0.025] unit decrease	Affymetrix [319769] (imputed)	N
616	chr6_cox_hap2	4072969	4072970	rs6689	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	6p21.32		rs6689-G	NR	1E-44		0.0349	[0.03-0.04] unit increase	Affymetrix, Illumina [20536134] (imputed)	N
616	chr6_cox_hap2	4072969	4072970	rs6689	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	135,808 East Asian ancestry individuals	NA	6p21.32		rs6689-G	0.191232	2E-10		0.0291023	[0.02-0.038] unit increase	Illumina [13476599] (imputed)	N
616	chr6_cox_hap2	4072969	4072970	rs6689	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	6p21.32	NR	rs6689-?	NR	7E-11				Affymetrix [~ 8270000] (imputed)	N
616	chr6_cox_hap2	4072969	4072970	rs6689	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs6689-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
616	chr6_cox_hap2	4072983	4072984	rs1063355	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	6p21.32	HLA-DQB1	rs1063355-T	0.397563657636028	4E-19		0.0709	[0.055-0.086] unit decrease	NR [5035015] (imputed)	N
616	chr6_cox_hap2	4072983	4072984	rs1063355	24837172	Juyal G	2014-05-16	Gut	Genome-wide association scan in north Indians reveals three novel HLA-independent risk loci for ulcerative colitis.	Ulcerative colitis	603 North Indian ancestry cases, 622 North Indian ancestry controls	733 North Indian ancestry cases, 1,148 North Indian ancestry controls	6p21.32	HLA-DQB1, HLA-DRA, HLA-DQA1	rs1063355-A	NR	2E-6		1.43	[1.23-1.66]	Illumina [480391]	N
616	chr6_cox_hap2	4073064	4073065	rs1766	33204752	Butler-Laporte G	2020-09-24	Open Forum Infect Dis	Genetic Determinants of Antibody-Mediated Immune Responses to Infectious Diseases Agents: A Genome-Wide and HLA Association Study.	Anti-varicella zoster virus IgG seropositivity	8,735 White British ancestry individuals	NA	6p21.32	HLA-DQB1	rs1766-A	0.53	1E-11		0.04	unit decrease	NR [25472218] (imputed)	N
616	chr6_cox_hap2	4073809	4073811	rs201043192	26423011	Wain LV	2015-09-27	Lancet Respir Med	Novel insights into the genetics of smoking behaviour, lung function, and chronic obstructive pulmonary disease (UK BiLEVE): a genetic association study in UK Biobank.	Lung function (low FEV1 vs high FEV1)	19,493 European ancestry individuals with low FEV1 measurements, 9,808 European ancestry individuals with high FEV1 measurements	NA	6p21.32	HLA-DQB1	rs201043192-A	NR	5E-9		0.114	[0.077-0.151] unit increase	Affymetrix [28509962] (imputed)	N
616	chr6_cox_hap2	4078032	4078033	rs67842782	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p21.32		rs67842782-C	0.852	5E-9				Affymetrix [10369434] (imputed)	N
616	chr6_cox_hap2	4081242	4081243	rs9274600	26423011	Wain LV	2015-09-27	Lancet Respir Med	Novel insights into the genetics of smoking behaviour, lung function, and chronic obstructive pulmonary disease (UK BiLEVE): a genetic association study in UK Biobank.	Lung function in never smokers (low FEV1 vs high FEV1)	9,745 European ancestry individuals with low FEV1 measurements, 4,902 European ancestry individuals with high FEV1 measurements	NA	6p21.32	HLA-DQB1, HLA-DQA2	rs9274600-G	0.472	1E-10		1.18	[1.13-1.25]	Affymetrix [28509962] (imputed)	N
616	chr6_cox_hap2	4081553	4081554	rs3828794	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6p21.32	NR	rs3828794-G	0.5206	1E-9		1.0380982	[1.03-1.05]	Affymetrix [15688218] (imputed)	N
616	chr6_cox_hap2	4081599	4081600	rs2647025	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	6p21.32	NR	rs2647025-?	NR	4E-99	(conditional)			Affymetrix [15688218] (imputed)	N
616	chr6_cox_hap2	4081648	4081649	rs9274623	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	6p21.32	NR	rs9274623-G	NR	6E-19		1.1363636	[NR]	Illumina [7158791] (imputed)	N
616	chr6_cox_hap2	4081713	4081714	rs3828800	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DQB1	rs3828800-A	NR	1E-8		0.0236155	[0.016-0.032] unit decrease	Affymetrix [323123] (imputed)	N
616	chr6_cox_hap2	4081770	4081771	rs3828805	34642315	Ferreiro-Iglesias A	2021-10-12	Nat Commun	Germline determinants of humoral immune response to HPV-16 protect against oropharyngeal cancer.	Oropharynx cancer and human papilloma virus 16 negative oropharyngeal cancer	2,359 European ancestry cases, 565 European ancestry controls	NA	6p21.32		rs3828805-C	NR	3E-9		1.2999		Illumina [up to 7574753] (imputed)	N
616	chr6_cox_hap2	4081770	4081771	rs3828805	27749845	Lesseur C	2016-10-17	Nat Genet	Genome-wide association analyses identify new susceptibility loci for oral cavity and pharyngeal cancer.	Oropharynx cancer	2,506 European ancestry cases, 135 cases, 5,984 European ancestry controls, 601 controls	NA	6p21.32	HLA-DQB1	rs3828805-C	0.720208999141883	2E-12		1.3699		Illumina [7574753] (imputed)	N
616	chr6_cox_hap2	4081770	4081771	rs3828805	27749845	Lesseur C	2016-10-17	Nat Genet	Genome-wide association analyses identify new susceptibility loci for oral cavity and pharyngeal cancer.	Oral cavity and pharyngeal cancer	2,717 European ancestry oral cavity cancer cases, 273 oral cavity cancer cases, 2,506 European ancestry oropharynx cancer cases, 135 oropharynx cancer cases, 305 European and unknown ancestry hypopharynx cancer cases, 73 European and unknown ancestry overlapping cases, 25 European and unknown ancestry cases, 5,984 European ancestry controls, 601 controls	NA	6p21.32	HLA-DQB1	rs3828805-C	0.72	3E-13		1.2759		Illumina [7574753] (imputed)	N
616	chr6_cox_hap2	4082014	4082015	rs9274657	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.32	HLA-DQA1, HLA-DQB1, HLA-DRB1, HLA-DRB6	rs9274657-A		1E-8		1.07	[1.04-1.09]	Affymetrix, Illumina [NR]	N
616	chr6_cox_hap2	4082026	4082027	rs2856698	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	6p21.32		rs2856698-G	NR	1E-158		0.2523	[0.23-0.27] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
616	chr6_cox_hap2	4082026	4082027	rs2856698	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	6p21.32	HLA-DQB1	rs2856698-G	0.328285	3E-170		0.2688451	[0.25-0.29] unit increase	Affymetrix [7288503] (imputed)	N
616	chr6_cox_hap2	4082035	4082036	rs9274659	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (age of onset)	37,846 British ancestry individuals	NA	6p21.32	NR	rs9274659-A	0.67	7E-18		1.249	[0.96-1.53] unit decrease	Affymetrix [10894596] (imputed)	N
616	chr6_cox_hap2	4082145	4082146	rs9461792	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DQB1	rs9461792-A	NR	2E-14		0.0240826	[0.018-0.03] unit increase	Affymetrix [321169] (imputed)	N
616	chr6_cox_hap2	4082290	4082291	rs17205409	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.32		rs17205409-T	0.71	8E-19				Affymetrix [10369434] (imputed)	N
616	chr6_cox_hap2	4082296	4082297	rs9274678	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	6p21.32	HLA-DQB1	rs9274678-G	0.153747	3E-39		0.0256517	[0.02-0.031] unit increase	Affymetrix [93095623] (imputed)	N
616	chr6_cox_hap2	4082349	4082350	rs28371206	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQB1	rs28371206-A	NR	4E-13		0.022406	[0.016-0.028] unit increase	Affymetrix [319769] (imputed)	N
616	chr6_cox_hap2	4082349	4082350	rs28371206	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DQB1	rs28371206-A	NR	3E-13		0.0226484	[0.017-0.029] unit increase	Affymetrix [319769] (imputed)	N
616	chr6_cox_hap2	4082381	4082382	rs184950714	32581322	Kakuta Y	2020-06-24	Sci Rep	An Integrated Genomic and Transcriptomic Analysis Reveals Candidates of Susceptibility Genes for Crohn's Disease in Japanese Populations.	Crohn's disease	713 Japanese ancestry cases, 2,063 Japanese ancestry controls	NA	6p21.32	HLA	rs184950714-?	NR	1E-17		1.16	[1.12-1.19]	NR [7424691] (imputed)	N
616	chr6_cox_hap2	4082381	4082382	rs184950714	30500874	Kakuta Y	2018-11-29	J Crohns Colitis	A genome-wide association study identifying RAP1A as a novel susceptibility gene for Crohn's disease in Japanese individuals.	Crohn's disease	713 Japanese ancestry cases, 2,083 Japanese ancestry controls	770 Japanese ancestry cases, 852 Japanese ancestry controls	6p21.32	HLA-DQB1	rs184950714-?	0.156	4E-19		2.05	NR	NR [4335144] (imputed)	N
616	chr6_cox_hap2	4082650	4082651	rs9274695	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQB1	rs9274695-T	NR	5E-9		0.0173565	[0.012-0.023] unit increase	Affymetrix [319769] (imputed)	N
616	chr6_cox_hap2	4082650	4082651	rs9274695	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DQB1	rs9274695-T	NR	3E-8		0.0165442	[0.011-0.022] unit increase	Affymetrix [319769] (imputed)	N
616	chr6_cox_hap2	4082650	4082651	rs9274695	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DQB1	rs9274695-T	NR	1E-11		0.021862	[0.016-0.028] unit decrease	Affymetrix [323123] (imputed)	N
616	chr6_cox_hap2	4082811	4082812	rs17205528	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p21.32	NR	rs17205528-?	NR	3E-12		0.1232	[0.088-0.158] unit increase	Illumina [at least 560000] (imputed)	N
616	chr6_cox_hap2	4082866	4082867	rs9274704	31719529	Lyons PA	2019-11-12	Nat Commun	Genome-wide association study of eosinophilic granulomatosis with polyangiitis reveals genomic loci stratified by ANCA status.	Eosinophilic granulomatosis with polyangiitis	534 European ancestry cases, 6,688 European ancestry controls	142 European and unknown ancestry cases, 121 European and unknown ancestry controls	6p21.32	HLA-DQ	rs9274704-?	NR	1E-20		0.7	NR unit increase	Affymetrix [9246221] (imputed)	N
616	chr6_cox_hap2	4083066	4083067	rs17205640	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	150,708 East Asian ancestry individuals	NA	6p21.32	NR	rs17205640-T	0.456457	2E-22		0.047325	[0.038-0.057] SD units increase	Affymetrix, Illumina [16709798] (imputed)	N
616	chr6_cox_hap2	4083066	4083067	rs17205640	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	149,861 East Asian ancestry individuals	NA	6p21.32	NR	rs17205640-T	0.456482	8E-17		0.040531	[0.031-0.05] SD units increase	Affymetrix, Illumina [16709126] (imputed)	N
616	chr6_cox_hap2	4083066	4083067	rs17205640	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	142,940 East Asian ancestry individuals	NA	6p21.32	NR	rs17205640-T	0.455611	1E-14		0.038007	[0.028-0.048] SD units increase	Affymetrix, Illumina [16289021] (imputed)	N
616	chr6_cox_hap2	4083123	4083124	rs9274719	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	81,042 East Asian ancestry individuals	NA	6p21.32	NR	rs9274719-T	0.330615	3E-10		0.040123	[0.028-0.053] SD units increase	Affymetrix, Illumina [16286709] (imputed)	N
616	chr6_cox_hap2	4083125	4083126	rs17212014	31719529	Lyons PA	2019-11-12	Nat Commun	Genome-wide association study of eosinophilic granulomatosis with polyangiitis reveals genomic loci stratified by ANCA status.	Eosinophilic granulomatosis with polyangiitis (MPO-ANCA positive)	159 European ancestry cases, 6,688 European ancestry controls	43 European and unknown ancestry cases, 121 European and unknown ancestry controls	6p21.32	HLA-DQ	rs17212014-?	NR	1E-41		2.0	NR unit increase	Affymetrix [9246221] (imputed)	N
616	chr6_cox_hap2	4083150	4083151	rs3997832	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQB1	rs3997832-C	NR	3E-15		0.022848	[0.017-0.029] unit increase	Affymetrix [319769] (imputed)	N
616	chr6_cox_hap2	4083150	4083151	rs3997832	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DQB1	rs3997832-C	NR	5E-15		0.0226927	[0.017-0.028] unit increase	Affymetrix [319769] (imputed)	N
616	chr6_cox_hap2	4083226	4083227	rs9274725	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DQB1	rs9274725-T	NR	8E-18		0.0244981	[0.019-0.03] unit increase	Affymetrix [321169] (imputed)	N
616	chr6_cox_hap2	4083396	4083397	rs1694129	33768542	Liu Y	2021-03-26	Clin Pharmacol Ther	Class II HLA Variants Associate with Risk of Pegaspargase Hypersensitivity.	Asparaginase hypersensitivity in acute lymphoblastic leukemia	2,168 European ancestry individuals	NA	6p21.32	HLA-DQB1	rs1694129-T	NR	1E-8		2.03	[NR]	Illumina [NR] (imputed)	N
616	chr6_cox_hap2	4083828	4083829	rs28746882	33143745	Andlauer TFM	2020-11-04	BMC Med	Treatment- and population-specific genetic risk factors for anti-drug antibodies against interferon-beta: a GWAS.	Binding antibody response to interferon beta therapy in multiple sclerosis (antibody levels; all treatment preparations)	up to 2,000 German and Swedish ancestry individuals	up to 757 German and Swedish ancestry individuals	6p21.32		rs28746882-A	0.08	5E-11	(conditional on rs9272071)	0.27678168	[0.19-0.36] unit increase	Illumina [8550834] (imputed)	N
616	chr6_cox_hap2	4085787	4085788	rs9274845	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium HDL	115,082 European ancestry individuals	NA	6p21.32		rs9274845-C	0.579977	1E-11		0.0273653	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
616	chr6_cox_hap2	4085787	4085788	rs9274845	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium HDL	115,082 European ancestry individuals	NA	6p21.32		rs9274845-C	0.579977	6E-13		0.0292315	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
616	chr6_cox_hap2	4085787	4085788	rs9274845	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in HDL	115,082 European ancestry individuals	NA	6p21.32		rs9274845-C	0.579977	6E-9		0.0228022	[0.015-0.03] unit decrease	NR [11722792] (imputed)	N
616	chr6_cox_hap2	4085787	4085788	rs9274845	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	6p21.32		rs9274845-C	0.579977	1E-8		0.022675	[0.015-0.03] unit decrease	NR [11722792] (imputed)	N
616	chr6_cox_hap2	4085787	4085788	rs9274845	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein A1 levels	115,082 European ancestry individuals	NA	6p21.32		rs9274845-C	0.579977	1E-8		0.0226077	[0.015-0.03] unit decrease	NR [11722792] (imputed)	N
616	chr6_cox_hap2	4085795	4085796	rs9274846	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium HDL particles	115,082 European ancestry individuals	NA	6p21.32		rs9274846-C	0.579991	3E-10		0.0251988	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
616	chr6_cox_hap2	4085795	4085796	rs9274846	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium HDL	115,082 European ancestry individuals	NA	6p21.32		rs9274846-C	0.579991	9E-9		0.0230622	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
616	chr6_cox_hap2	4085795	4085796	rs9274846	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	6p21.32		rs9274846-C	0.579991	7E-9		0.023128	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
616	chr6_cox_hap2	4086801	4086802	rs9274890	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs9274890-A	0.257	2E-12	(Complement C4, C4A.C4B.4481.34.2)	0.22	[0.16-0.28] unit increase	Affymetrix [10572788] (imputed)	N
616	chr6_cox_hap2	4086874	4086875	rs9274903	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs9274903-A	0.266	4E-14	(Complement C4, C4A.C4B.4481.34.2)	0.22	[0.16-0.28] unit increase	Affymetrix [10572788] (imputed)	N
616	chr6_cox_hap2	4087531	4087532	rs9274954	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	HLA-DQB1	rs9274954-T	0.366	5E-13	(PAX-interacting protein 1, PAXIP1.12894.3.3)	0.22	[0.16-0.28] unit increase	Affymetrix [10572788] (imputed)	N
616	chr6_cox_hap2	4088136	4088137	rs1794484	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lung cancer	4,444 East Asian ancestry cases, 174,282 East Asian ancestry controls	NA	6p21.32		rs1794484-C	0.340651021	5E-10		0.1469222	[0.1-0.19] unit increase	Illumina [13429980] (imputed)	N
616	chr6_cox_hap2	4088412	4088413	rs1694123	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	HLA-DQB1	rs1694123-G	0.157	8E-13	(Zinc fingers and homeoboxes protein 3, ZHX3.10036.201.3)	0.27	[0.19-0.35] unit increase	Affymetrix [10572788] (imputed)	N
616	chr6_cox_hap2	4090206	4090207	rs3134986	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	6p21.32	NA	rs3134986-T	0.2899	9E-9		0.002	[0.0014-0.0026] unit decrease	Affymetrix [15275733] (imputed)	N
616	chr6_cox_hap2	4092511	4092512	rs139025277	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs139025277-G	0.096	9E-14	(HLA class II histocompatibility antigen, DQ alpha 2 chain, HLA.DQA2.7757.5.3)	0.35	[0.25-0.45] unit decrease	Affymetrix [10572788] (imputed)	N
616	chr6_cox_hap2	4092714	4092715	rs28755358	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs28755358-A	0.247	8E-16	(Complement C4, C4A.C4B.4481.34.2)	0.26	[0.2-0.32] unit increase	Affymetrix [10572788] (imputed)	N
616	chr6_cox_hap2	4093031	4093032	rs56151658	32890573	Yan Q	2020-09-02	J Allergy Clin Immunol	A genome-wide association study of asthma hospitalizations in adults.	Exacerbations requiring hospitalisation in asthma	1,658 British ancestry cases, 32,509 British ancestry controls	NA	6p21.32	NR	rs56151658-A	0.89	3E-8		1.36	[1.22-1.52]	Affymetrix [87696888] (imputed)	N
616	chr6_cox_hap2	4093121	4093122	rs6931740	31719529	Lyons PA	2019-11-12	Nat Commun	Genome-wide association study of eosinophilic granulomatosis with polyangiitis reveals genomic loci stratified by ANCA status.	Eosinophilic granulomatosis with polyangiitis (ANCA negative)	352 European ancestry cases, 6,688 European ancestry controls	94 European and unknown ancestry cases, 121 European and unknown ancestry controls	6p21.32	HLA	rs6931740-?	NR	3E-9		0.55	NR unit increase	Affymetrix [9246221] (imputed)	N
616	chr6_cox_hap2	4093353	4093354	rs3129780	27749845	Lesseur C	2016-10-17	Nat Genet	Genome-wide association analyses identify new susceptibility loci for oral cavity and pharyngeal cancer.	Oral cavity cancer	2,717 European ancestry cases, 273 cases, 5,984 European ancestry controls, 601 controls	NA	6p21.32	intergenic	rs3129780-A	0.64	6E-8		1.2373	NR	Illumina [7574753] (imputed)	N
616	chr6_cox_hap2	4093518	4093519	rs201414107	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lung cancer	3,791 European ancestry cases, 489,012 European ancestry controls, 4,444 East Asian ancestry cases, 174,282 East Asian ancestry controls	NA	6p21.32		rs201414107-A	NR	8E-10		0.1374	[0.093-0.181] unit increase	Affymetrix, Illumina [25845450] (imputed)	N
616	chr6_cox_hap2	4093808	4093809	rs9275052	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.32	NR	rs9275052-G	NR	1E-10		0.028	unit decrease	Affymetrix [at least 7091467] (imputed)	N
616	chr6_cox_hap2	4093808	4093809	rs9275052	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.32	NR	rs9275052-G	0.404	5E-9	(EA)	0.027	unit decrease	Affymetrix [at least 7091467] (imputed)	N
616	chr6_cox_hap2	4093808	4093809	rs9275052	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.32	NR	rs9275052-G	NR	2E-6		0.021	unit decrease	Affymetrix [at least 7091467] (imputed)	N
616	chr6_cox_hap2	4094600	4094601	rs545072519	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	HLA-DQB1	rs545072519-C	NR	2E-9		0.0333434	[0.022-0.044] unit increase	Affymetrix [321114] (imputed)	N
616	chr6_cox_hap2	4095316	4095317	rs1694112	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	6p21.32	NR	rs1694112-?	NR	8E-41	(conditional)			Affymetrix [15688218] (imputed)	N
616	chr6_cox_hap2	4095328	4095329	rs9275109	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	HLA-DQB1	rs9275109-G	NR	2E-9		0.0176049	[0.012-0.023] unit decrease	Affymetrix [321114] (imputed)	N
616	chr6_cox_hap2	4096264	4096265	rs9275134	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Cancer	56,634 White British ancestry cases, 218,196 White British ancestry controls	NA	6p21.32		rs9275134-?	NR	6E-6		0.964671	[0.95-0.98]	NR [688737]	N
616	chr6_cox_hap2	4096413	4096414	rs17205731	33143745	Andlauer TFM	2020-11-04	BMC Med	Treatment- and population-specific genetic risk factors for anti-drug antibodies against interferon-beta: a GWAS.	Binding antibody response to interferon beta therapy in multiple sclerosis (antibody levels; IFN?-1b subcutaneous)	up to 2,000 German and Swedish ancestry individuals	up to 757 German and Swedish ancestry individuals	6p21.32		rs17205731-T	0.05	2E-11	(conditional on HLA-DRB1*04:01)	0.62026006	[0.44-0.8] unit increase	Illumina [8550834] (imputed)	N
616	chr6_cox_hap2	4096731	4096732	rs17212146	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	6p21.32		rs17212146-A	0.01175	2E-14		0.08258159	[0.061-0.104] unit increase	Affymetrix [93095623] (imputed)	N
616	chr6_cox_hap2	4096731	4096732	rs17212146	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6p21.32		rs17212146-A	0.01175	3E-25		0.11182327	[0.091-0.133] unit increase	Affymetrix [93095623] (imputed)	N
616	chr6_cox_hap2	4097191	4097192	rs17212223	24204295	Han F	2013-10-31	PLoS Genet	Genome wide analysis of narcolepsy in China implicates novel immune loci and reveals changes in association prior to versus after the 2009 H1N1 influenza pandemic.	Narcolepsy (age of onset)	at least 1,000 Chinese ancestry cases	NA	6p21.32	NR	rs17212223-T	0.191	3E-8		1.95	year decrease	Affymetrix [603382]	N
616	chr6_cox_hap2	4097847	4097848	rs9275152	31660654	Bandres-Ciga S	2019-10-29	Mov Disord	The Genetic Architecture of Parkinson Disease in Spain: Characterizing Population-Specific Risk, Differential Haplotype Structures, and Providing Etiologic Insight.	Parkinson's disease	4,639 Spanish ancestry cases, 2,949 Spanish ancestry controls	NA	6p21.32	HLA-DQB1	rs9275152-C	0.08263	2E-8		0.376551	[0.25-0.51] unit decrease	Illumina [9911207] (imputed)	N
616	chr6_cox_hap2	4097929	4097930	rs3104361	33204752	Butler-Laporte G	2020-09-24	Open Forum Infect Dis	Genetic Determinants of Antibody-Mediated Immune Responses to Infectious Diseases Agents: A Genome-Wide and HLA Association Study.	Helicobacter pylori OMP antibody levels	2,640 White British ancestry individuals	NA	6p21.32	HLA-DQB1	rs3104361-T	0.418	7E-10		0.18	[0.12-0.24] unit decrease	NR [25472218] (imputed)	N
616	chr6_cox_hap2	4097968	4097969	rs7755224	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	6p21.32	NR	rs7755224-?	NR	5E-138	(conditional)			Affymetrix [15688218] (imputed)	N
616	chr6_cox_hap2	4098010	4098011	rs3021058	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Automobile speeding propensity	404,291 European ancestry individuals	NA	6p21.32	HLA-DQB1	rs3021058-A	0.5386	4E-8		0.012403218	[0.008-0.0168] unit increase	Affymetrix [11514463] (imputed)	N
616	chr6_cox_hap2	4098120	4098121	rs3021176	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hepatic cancer	379 European ancestry cases, 475,259 European ancestry controls, 2,122 East Asian ancestry cases, 159,201 East Asian ancestry controls	NA	6p21.32		rs3021176-A	NR	2E-9		0.2342	[0.16-0.31] unit increase	Affymetrix, Illumina [25843189] (imputed)	N
616	chr6_cox_hap2	4098271	4098272	rs9275160	34431594	Atkins JL	2021-08-25	Aging Cell	A genome-wide association study of the frailty index highlights brain pathways in ageing.	Frailty index	175,226 European ancestry individuals	NA	6p21.32	HLA-DQB1, HLA-DQA2	rs9275160-A	0.3397	7E-28		0.0382	[0.031-0.045] unit increase	Affymetrix, Illumina [7666890] (imputed)	N
616	chr6_cox_hap2	4098271	4098272	rs9275160	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	6p21.32	NR	rs9275160-A	NR	9E-8		1.044	[1.03-1.06]	Affymetrix, Illumina [29235255] (imputed)	N
616	chr6_cox_hap2	4098436	4098437	rs28746950	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs28746950-A	0.172	4E-13	(Ubiquitin carboxyl-terminal hydrolase 25, USP25.9215.117.3)	0.27	[0.19-0.35] unit increase	Affymetrix [10572788] (imputed)	N
616	chr6_cox_hap2	4098598	4098599	rs115712830	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28- CD4-CD8- T cell Absolute Count	3,408 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs115712830-C	0.15817	5E-8		0.2914	[0.19-0.4] unit decrease	Illumina [18340221] (imputed)	N
616	chr6_cox_hap2	4099624	4099625	rs9275171	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	2,495 East Asian ancestry cases, 4,283 East Asian ancestry controls	NA	6p21.32		rs9275171-G	NR	5E-29		0.446594	[0.37-0.52] unit increase	NR [5275424] (imputed)	N
616	chr6_cox_hap2	4099826	4099827	rs9275177	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	IgA nephropathy	1,180 East Asian ancestry cases, 899 East Asian ancestry controls	NA			rs9275177-T	NR	2E-6		0.362916	[0.21-0.51] unit increase	Illumina [NR] (imputed)	N
616	chr6_cox_hap2	4100366	4100367	rs9275184	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	6p21.32	NR	rs9275184-C	0.1106	6E-24		0.0981	[0.079-0.117] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
616	chr6_cox_hap2	4100474	4100475	rs2856687	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	6p21.32	NR	rs2856687-C	0.588689	2E-12		0.0486468	[0.035-0.062] unit decrease	Affymetrix [17914406] (imputed)	N
616	chr6_cox_hap2	4100629	4100630	rs28747027	32573827	Huang YH	2020-06-23	Aliment Pharmacol Ther	Large-scale genome-wide association study identifies HLA class II variants associated with chronic HBV infection: a study from Taiwan Biobank.	Chronic hepatitis B infection	1,810 East Asian cases, 9,002 East Asian seropositive controls	648 East Asian cases, 3,190 East Asian seropositive controls	6p21.32	NR	rs28747027-G	0.4639	7E-21		1.41	[1.32-1.52]	Affymetrix [583383]	N
616	chr6_cox_hap2	4101200	4101201	rs13194877	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs13194877-A	0.2	6E-9		4.48	[3.41-5.89]	Illumina [NR] (imputed)	N
616	chr6_cox_hap2	4101382	4101383	rs3129783	33143745	Andlauer TFM	2020-11-04	BMC Med	Treatment- and population-specific genetic risk factors for anti-drug antibodies against interferon-beta: a GWAS.	Binding antibody response to interferon beta therapy in multiple sclerosis (antibody levels; IFN?-1a subcutaneous and intramuscular)	up to 2,000 German and Swedish ancestry individuals	up to 757 German and Swedish ancestry individuals	6p21.32		rs3129783-G	0.44	4E-19		0.3	[-0.24--0.36] unit decrease	Illumina [8550834] (imputed)	N
616	chr6_cox_hap2	4101568	4101569	rs189311301	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs189311301-C	0.991	3E-10		2.233	[1.98-2.48]	Illumina [11270530] (imputed)	N
616	chr6_cox_hap2	4101718	4101718	rs201452941	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.32	HLA-DQB1, HLA-DQA2	rs201452941-?	0.611	7E-12	(women)	0.0399317	[0.029-0.051] unit decrease	Illumina [13520550] (imputed)	N
616	chr6_cox_hap2	4101720	4101720	rs111626885	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.32	Intergenic	rs111626885-?	NR	7E-12	(women)	0.0399302	[0.029-0.051] unit decrease	Illumina [13520550] (imputed)	N
616	chr6_cox_hap2	4103088	4103089	rs3129716	26316170	Demirci FY	2015-08-28	Arthritis Rheumatol	Identification of a New Susceptibility Locus for Systemic Lupus Erythematosus on Chromosome 12 in Individuals of European Ancestry.	Systemic lupus erythematosus	661 European ancestry cases, 487 European ancestry controls	4,467 European ancestry cases, 9,114 European ancestry controls	6p21.32	HLA-DQB1	rs3129716-?	NR	4E-9				Affymetrix [up to 700598]	N
616	chr6_cox_hap2	4103195	4103196	rs4642516	30012571	Jia X	2018-07-16	J Am Soc Nephrol	Strong Association of the HLA-DR/DQ Locus with Childhood Steroid-Sensitive Nephrotic Syndrome in the Japanese Population.	Childhood steroid-sensitive nephrotic syndrome	224 Japanese ancestry cases, 412 Japanese ancestry controls	216 Japanese ancestry cases, 719 Japanese ancestry controls	6p21.32	HLA-DR, HLA-DQ	rs4642516-T	0.73	7E-13		3.030303	[2.44-3.85]	Affymetrix [4105543] (imputed)	N
616	chr6_cox_hap2	4103230	4103231	rs7774434	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	8,021 European ancestry cases, 16,489 European ancestry controls, 2,495 East Asian ancestry cases, 4,283 East Asian ancestry controls	NA	6p21.32		rs7774434-C	NR	3E-116		0.462101	[0.42-0.5] unit increase	NR [2787054] (imputed)	N
616	chr6_cox_hap2	4103230	4103231	rs7774434	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	8,021 European ancestry cases, 16,489 European ancestry controls	NA	6p21.32		rs7774434-C	NR	4E-104		0.470454	[0.43-0.51] unit increase	NR [5054572] (imputed)	N
616	chr6_cox_hap2	4103230	4103231	rs7774434	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	MTCO3P1	rs7774434-C	NR	6E-9		0.0168538	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
616	chr6_cox_hap2	4103230	4103231	rs7774434	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	MTCO3P1	rs7774434-C	NR	2E-8		0.0162768	[0.011-0.022] unit increase	Affymetrix [319769] (imputed)	N
616	chr6_cox_hap2	4103230	4103231	rs7774434	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	MTCO3P1	rs7774434-C	NR	2E-10		0.0201596	[0.014-0.026] unit decrease	Affymetrix [323123] (imputed)	N
616	chr6_cox_hap2	4103230	4103231	rs7774434	26394269	Cordell HJ	2015-09-22	Nat Commun	International genome-wide meta-analysis identifies new primary biliary cirrhosis risk loci and targetable pathogenic pathways.	Primary biliary cholangitis	2,764 European ancestry cases, 10,475 European ancestry controls	3,716 European ancestry cases,  4,261 European ancestry controls	6p21.32	MHC	rs7774434-C	0.47	2E-56		1.68	NR	Illumina [1143634] (imputed)	N
616	chr6_cox_hap2	4103230	4103231	rs7774434	22961000	Liu JZ	2012-10-01	Nat Genet	Dense fine-mapping study identifies new susceptibility loci for primary biliary cirrhosis.	Primary biliary cirrhosis	2,861 British and Irish ancestry cases, 8,514 British and Irish ancestry controls	NA	6p21.32	HLA	rs7774434-C	0.38	1E-48		1.57		Illumina [237619] (imputed)	N
616	chr6_cox_hap2	4103230	4103231	rs7774434	21399635	Mells GF	2011-03-13	Nat Genet	Genome-wide association study identifies 12 new susceptibility loci for primary biliary cirrhosis.	Primary biliary cholangitis	1,840 European ancestry cases, 5,163 European ancestry controls and (Liu et al)	620 European ancestry cases, 2,514 European ancestry controls	6p21.32	MHC	rs7774434-C	0.38	4E-34		1.6	[1.48-1.73]	Illumina [507467]	N
616	chr6_cox_hap2	4103230	4103231	rs7774434	20639880	Liu X	2010-07-18	Nat Genet	Genome-wide meta-analyses identify three loci associated with primary biliary cirrhosis.	Primary biliary cholangitis	453 European ancestry cases, 945 European ancestry controls,	481 European ancestry cases, 3,706 European ancestry controls	6p21.32	HLA-DQB1	rs7774434-C	0.371	3E-26		1.75	[NR]	Illumina [276459]	N
616	chr6_cox_hap2	4103469	4103470	rs9275210	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	MTCO3P1	rs9275210-T	NR	9E-9		0.0164099	[0.011-0.022] unit increase	Affymetrix [321114] (imputed)	N
616	chr6_cox_hap2	4103568	4103569	rs7775055	23603761	Hinks A	2013-04-21	Nat Genet	Dense genotyping of immune-related disease regions identifies 14 new susceptibility loci for juvenile idiopathic arthritis.	Juvenile idiopathic arthritis (oligoarticular or rheumatoid factor-negative polyarticular)	2,816 European ancestry cases, 13,056 European ancestry controls	NA	6p21.32	HLA-DQA2, HLA-DQB1	rs7775055-G	0.02	3E-174	(dominant model)	6.01	[5.30-6.81]	Illumina [123003]	N
616	chr6_cox_hap2	4103568	4103569	rs7775055	22936693	Juran BD	2012-08-29	Hum Mol Genet	Immunochip analyses identify a novel risk locus for primary biliary cirrhosis at 13q14, multiple independent associations at four established risk loci and epistasis between 1p31 and 7q32 risk variants.	Primary biliary cirrhosis	2,216 European ancestry cases, 5,594 Europen ancestry controls	NA	6p21.32	NR	rs7775055-C		1E-33		3.71	[3.00-4.59]	Illumina [109812]	N
616	chr6_cox_hap2	4103731	4103732	rs7775228	33106546	Johnson TA	2020-10-26	J Hum Genet	Association of an IGHV3-66 gene variant with Kawasaki disease.	Kawasaki disease	1,276 East Asian ancestry cases, 5,086 East Asian ancestry controls	2,152 East Asian ancestry cases, 2,751 East Asian ancestry controls	6p21.32	HLA-DQB1	rs7775228-C	NR	7E-13		1.26	[1.19-1.35]	Affymetrix, Illumina [6265045] (imputed)	N
616	chr6_cox_hap2	4103731	4103732	rs7775228	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.32	NR	rs7775228-?	NR	3E-6	(EA, C-C motif chemokine 19)			Affymetrix [509946]	N
616	chr6_cox_hap2	4103731	4103732	rs7775228	25147954	Enroth S	2014-08-22	Nat Commun	Strong effects of genetic and lifestyle factors on biomarker variation and use of personalized cutoffs.	CCL19 levels	up to 653 individuals	up to 317 individuals	6p21.32	HLA-DQB1	rs7775228-C	0.16731	3E-13		0.51	[0.37-0.65] unit increase	Illumina [4840842] (imputed)	N
616	chr6_cox_hap2	4103731	4103732	rs7775228	22036096	Ramasamy A	2011-11-01	J Allergy Clin Immunol	A genome-wide meta-analysis of genetic variants associated with allergic rhinitis and grass sensitization and their interaction with birth order.	IgE grass sensitization	2,315 European ancestry cases, 10,032 European ancestry controls	NA	6p21.32	HLA region	rs7775228-C	0.13	2E-9		1.33	[1.21-1.45]	Affymetrix, Illumina [2217510] (imputed)	N
616	chr6_cox_hap2	4103731	4103732	rs7775228	21804548	Hirota T	2011-07-31	Nat Genet	Genome-wide association study identifies three new susceptibility loci for adult asthma in the Japanese population.	Asthma	1,532 Japanese ancestry cases, 3,304 Japanese ancestry controls	5,639 Japanese ancestry cases, 24,608 Japanese ancestry controls	6p21.32	HLA-DQB1	rs7775228-A	0.63	5E-15		1.17	[1.12-1.21]	Illumina [458847]	N
616	chr6_cox_hap2	4103962	4103963	rs9469220	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	MTCO3P1	rs9469220-A	NR	5E-16		0.0228026	[0.017-0.028] unit increase	Affymetrix [319769] (imputed)	N
616	chr6_cox_hap2	4103962	4103963	rs9469220	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	MTCO3P1	rs9469220-A	NR	9E-16		0.0226045	[0.017-0.028] unit increase	Affymetrix [319769] (imputed)	N
616	chr6_cox_hap2	4103962	4103963	rs9469220	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	MTCO3P1	rs9469220-A	NR	5E-18		0.0246439	[0.019-0.03] unit increase	Affymetrix [321169] (imputed)	N
616	chr6_cox_hap2	4103962	4103963	rs9469220	30230522	Zhang S	2018-09-19	Br J Dermatol	Subtype-Specific Inherited Predisposition to Pemphigus in Chinese Population.	Pemphigus vulgaris	255 Chinese ancestry cases, 501 Chinese ancestry controls	110 Chinese ancestry cases, 604 Chinese ancestry controls	6p21.32	NR	rs9469220-G	0.33	4E-19		3.36	NR	Affymetrix [416397]	N
616	chr6_cox_hap2	4103962	4103963	rs9469220	30230522	Zhang S	2018-09-19	Br J Dermatol	Subtype-Specific Inherited Predisposition to Pemphigus in Chinese Population.	Pemphigus	350 Chinese ancestry cases, 501 Chinese ancestry controls	146 Chinese ancestry cases, 604 Chinese ancestry controls	6p21.32	NR	rs9469220-G	0.33	7E-22		3.2	NR	Affymetrix [416397]	N
616	chr6_cox_hap2	4103962	4103963	rs9469220	23146381	Levin AM	2012-11-10	J Allergy Clin Immunol	A meta-analysis of genome-wide association studies for serum total IgE in diverse study populations.	IgE levels	2,469 African American individuals, 259 Latino individuals, 1,564 European ancestry individuals	2,961 African American individuals, 1,477 Latino individuals, 649 European ancestry individuals, 680 Hutterite individuals	6p21.32	HLA-DQB1	rs9469220-G	NR	2E-7		0.09	[0.05-0.12] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
616	chr6_cox_hap2	4103962	4103963	rs9469220	17554300	Wellcome Trust Case Control Consortium	2007-06-07	Nature	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Crohn's disease	1,748 European ancestry cases, 2,938 European ancestry controls	(see Parkes 2007)	6p21.32	NR	rs9469220-A	0.48	2E-6		1.14	[0.98-1.32]	Affymetrix [469557]	N
616	chr6_cox_hap2	4104345	4104346	rs34723256	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs34723256-A	0.059	4E-68	(conditional)	2.282	[2.19-2.37]	Illumina [11270530] (imputed)	N
616	chr6_cox_hap2	4104366	4104367	rs2858330	31985003	Boocock J	2020-01-27	Hum Mol Genet	Genomic dissection of 43 serum urate-associated loci provides multiple insights into molecular mechanisms of urate control.	Urate levels	110,238 European ancestry individuals, 21,471 East Asian individuals	NA	6p21.32	HLA-DQB1	rs2858330-T		4E-8		0.027	[0.017-0.037] mg/dl increase	NR [NR] (imputed)	N
616	chr6_cox_hap2	4104584	4104585	rs9275218	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	MTCO3P1	rs9275218-G	NR	1E-11		0.0205042	[0.015-0.026] unit increase	Affymetrix [321169] (imputed)	N
616	chr6_cox_hap2	4105093	4105094	rs140068907	26891255	Jung ES	2016-02-18	Inflamm Bowel Dis	HLA-C*01 is a Risk Factor for Crohn's Disease.	Crohn's disease	275 Korean ancestry cases, 2,369 Korean ancestry controls	242 Korean ancestry cases, 1,066 Korean ancestry controls	6p21.32	HLA-DQB1, HLA-DQA2	rs140068907-C	0.08	1E-11		1.98	[1.62-2.41]	Affymetrix [3387207] (imputed)	N
616	chr6_cox_hap2	4105166	4105167	rs9275222	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	MTCO3P1	rs9275222-T	NR	7E-11		0.0204278	[0.014-0.027] unit increase	Affymetrix [323858] (imputed)	N
616	chr6_cox_hap2	4105166	4105167	rs9275222	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	MTCO3P1	rs9275222-T	NR	1E-9		0.0190432	[0.013-0.025] unit increase	Affymetrix [127266] (imputed)	N
616	chr6_cox_hap2	4105295	4105296	rs2856674	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	MTCO3P1	rs2856674-G	NR	7E-14		0.0297899	[0.022-0.038] unit decrease	Affymetrix [321169] (imputed)	N
616	chr6_cox_hap2	4105295	4105296	rs2856674	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling nervous	373,121 European ancestry individuals	NA	6p21.32	BRD2	rs2856674-A	0.144331	2E-10		6.41	z score increase	NR [10847151] (imputed)	N
616	chr6_cox_hap2	4105295	4105296	rs2856674	23603763	Liu JZ	2013-06-01	Nat Genet	Dense genotyping of immune-related disease regions identifies nine new risk loci for primary sclerosing cholangitis.	Primary sclerosing cholangitis	3,789 European ancestry cases, 25,079 European ancestry controls	NA	6p21.32	HLA-DQA	rs2856674-?	NR	1E-6	(conditioned on rs4143332 + HLA-DQA*01:03 + rs532098 +rs1794282 + rs9263964)			Illumina [140322] (imputed)	N
616	chr6_cox_hap2	4105488	4105489	rs3129718	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Hepatitis B	1,425 European ancestry cases, 218,180 European ancestry controls	NA	6p21.32	NR	rs3129718-?	NR	6E-6		0.3099	[0.17-0.45] unit decrease	Illumina [at least 560000] (imputed)	N
616	chr6_cox_hap2	4105528	4105529	rs9275224	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	MTCO3P1	rs9275224-G	NR	1E-13		0.0208122	[0.015-0.026] unit increase	Affymetrix [319769] (imputed)	N
616	chr6_cox_hap2	4105528	4105529	rs9275224	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	MTCO3P1	rs9275224-G	NR	1E-12		0.0199507	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
616	chr6_cox_hap2	4105528	4105529	rs9275224	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	MTCO3P1	rs9275224-G	NR	5E-16		0.023055	[0.017-0.029] unit increase	Affymetrix [321169] (imputed)	N
616	chr6_cox_hap2	4105528	4105529	rs9275224	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	6p21.32	HLA-DQB1, HLA-DQA1, HLA-DRB1	rs9275224-G	0.59	8E-14	(East Asian)	1.38		Illumina [> 1000000] (imputed)	N
616	chr6_cox_hap2	4105528	4105529	rs9275224	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	6p21.32	HLA-DQB1, HLA-DQA1, HLA-DRB1	rs9275224-G	0.51	6E-30		1.36	[NR]	Illumina [> 1000000] (imputed)	N
616	chr6_cox_hap2	4105528	4105529	rs9275224	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	6p21.32	HLA-DQB1, HLA-DQA1, HLA-DRB1	rs9275224-G	0.51	6E-18	(EA)	1.38	[NR]	Illumina [> 1000000] (imputed)	N
616	chr6_cox_hap2	4105547	4105548	rs35472814	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs35472814-C	0.2	1E-8		4.23	[3.24-5.52]	Illumina [NR] (imputed)	N
616	chr6_cox_hap2	4106232	4106233	rs2647006	30593799	Vergara C	2018-12-26	Gastroenterology	Multi-Ancestry Genome-Wide Association Study of Spontaneous Clearance of Hepatitis C Virus.	Hepatitis C (spontaneous viral clearance)	701 European ancestry cases, 1,035 European ancestry controls, 445 African American cases, 1,756 African American controls, 173 Hispanic ancestry cases, 313 Hispanic ancestry controls	NA	6p21.32	HLA-DQB1, HLA-DQA2	rs2647006-C	0.62	1E-21		1.79	NR (AA)	Illumina [15704341] (imputed)	N
616	chr6_cox_hap2	4106367	4106368	rs9275239	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	MTCO3P1	rs9275239-A	NR	2E-20		0.0286392	[0.023-0.035] unit decrease	Affymetrix [323123] (imputed)	N
616	chr6_cox_hap2	4106391	4106392	rs9275241	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs9275241-?	NR	2E-13				Affymetrix [~ 8270000] (imputed)	N
616	chr6_cox_hap2	4106597	4106598	rs9275245	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (mother's age at death or mother's attained age)	up to 699,000 individuals	NA	6p21.32	NR	rs9275245-A		3E-6				Illumina [458525]	N
616	chr6_cox_hap2	4106947	4106948	rs2858320	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	MTCO3P1	rs2858320-A	NR	9E-24		0.0285816	[0.023-0.034] unit decrease	Affymetrix [319769] (imputed)	N
616	chr6_cox_hap2	4106947	4106948	rs2858320	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	MTCO3P1	rs2858320-A	NR	8E-23		0.0279496	[0.022-0.034] unit decrease	Affymetrix [319769] (imputed)	N
616	chr6_cox_hap2	4106947	4106948	rs2858320	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	MTCO3P1	rs2858320-A	NR	9E-27		0.0308142	[0.025-0.036] unit decrease	Affymetrix [321169] (imputed)	N
616	chr6_cox_hap2	4106947	4106948	rs2858320	33119750	Vergara C	2020-10-29	J Infect Dis	A multi-ancestry sex stratified genome-wide association study of spontaneous clearance of hepatitis C virus.	Hepatitis C (spontaneous viral clearance)	239 African ancestry male cases, 1,184 African ancestry male controls, 206 African ancestry female cases, 572 African ancestry female controls, 489 European ancestry male cases, 703 European ancestry male controls, 212 European ancestry female cases, 332 European ancestry female controls, 91 Hispanic male cases, 197 Hispanic male controls, 82 Hispanic female cases, 116 Hispanic female controls	NA	6p21.32	NR	rs2858320-G	0.58	2E-12	(female)	1.96	[NR]	Illumina [5730693] (imputed)	N
616	chr6_cox_hap2	4107229	4107230	rs9275260	28698626	Lopez-Mejias R	2017-07-11	Sci Rep	A genome-wide association study suggests the HLA Class II region as the major susceptibility locus for IgA vasculitis.	Immunoglobulin A vasculitis	285 European ancestry cases, 1,006 European ancestry controls	NA	6p21.32	HLA-DQA1, HLA-DQB1	rs9275260-?		3E-9		1.7857143	[1.47-2.17]	Illumina [1909910] (imputed)	N
616	chr6_cox_hap2	4107649	4107650	rs79870097	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	6p21.32	NR	rs79870097-?	NR	6E-30	(conditional)			Affymetrix [15688218] (imputed)	N
616	chr6_cox_hap2	4107923	4107924	rs558121619	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Polyunsaturated fatty acid levels	115,006 European ancestry individuals	NA	6p21.32		rs558121619-A	0.542695	8E-10		0.0254897	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
616	chr6_cox_hap2	4107923	4107924	rs558121619	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-6 fatty acid levels	115,006 European ancestry individuals	NA	6p21.32		rs558121619-A	0.542695	3E-10		0.0262771	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
616	chr6_cox_hap2	4107923	4107924	rs558121619	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Linoleic acid levels	115,006 European ancestry individuals	NA	6p21.32		rs558121619-A	0.542695	2E-8		0.0235541	[0.015-0.032] unit decrease	NR [11722792] (imputed)	N
616	chr6_cox_hap2	4107934	4107935	rs2858317	33119750	Vergara C	2020-10-29	J Infect Dis	A multi-ancestry sex stratified genome-wide association study of spontaneous clearance of hepatitis C virus.	Hepatitis C (spontaneous viral clearance)	239 African ancestry male cases, 1,184 African ancestry male controls, 206 African ancestry female cases, 572 African ancestry female controls, 489 European ancestry male cases, 703 European ancestry male controls, 212 European ancestry female cases, 332 European ancestry female controls, 91 Hispanic male cases, 197 Hispanic male controls, 82 Hispanic female cases, 116 Hispanic female controls	NA	6p21.32	NR	rs2858317-A	0.63	1E-11	(male)	1.73	[NR]	Illumina [5730693] (imputed)	N
616	chr6_cox_hap2	4107934	4107935	rs2858317	31263063	Dufek S	2019-07-01	J Am Soc Nephrol	Genetic Identification of Two Novel Loci Associated with Steroid-Sensitive Nephrotic Syndrome.	Childhood steroid-sensitive nephrotic syndrome	422 European ancestry cases, 5,642 European ancestry controls	NA	6p21.32	HLA-DQB1	rs2858317-?	NR	4E-31	(conditioned on rs9273542)			Illumina [5216266] (imputed)	N
616	chr6_cox_hap2	4107998	4107999	rs9275263	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic hepatitis C infection	273 European ancestry cases, 351,740 European ancestry controls, 7,110 East Asian ancestry cases, 169,588 East Asian ancestry controls	NA	6p21.32		rs9275263-G	NR	2E-12		0.1228	[0.088-0.157] unit decrease	Affymetrix, Illumina [20457788] (imputed)	N
616	chr6_cox_hap2	4108079	4108080	rs9275267	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic hepatitis C infection	7,110 East Asian ancestry cases, 169,588 East Asian ancestry controls	NA	6p21.32		rs9275267-G	0.623579949	3E-12		0.1242382	[0.089-0.159] unit decrease	Illumina [13429570] (imputed)	N
616	chr6_cox_hap2	4108187	4108188	rs9275271	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR++ monocyte Absolute Count	3,579 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9275271-C	0.62317	2E-14		0.2356	[0.18-0.3] unit increase	Illumina [18377365] (imputed)	N
616	chr6_cox_hap2	4108200	4108201	rs9275272	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Prostate cancer	10,792 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs9275272-C	NR	2E-7		1.0948106	NR	Affymetrix [7846216] (imputed)	N
616	chr6_cox_hap2	4108574	4108575	rs9275281	28373541	Yang J	2017-04-03	Proc Natl Acad Sci U S A	Genetic signatures of high-altitude adaptation in Tibetans.	High altitude adaptation	3,008 Tibetan (founder/genetic isolate) individuals and 7,287 East Asian individuals	NA	6p21.32	HLA-DQB1	rs9275281-G	0.365	1E-10				Illumina [7300000] (imputed)	N
616	chr6_cox_hap2	4108575	4108576	rs114169440	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs114169440-A	0.2	2E-8		4.08	[3.13-5.31]	Illumina [NR] (imputed)	N
616	chr6_cox_hap2	4108628	4108629	rs9275282	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs9275282-?	NR	1E-14				Affymetrix [~ 8270000] (imputed)	N
616	chr6_cox_hap2	4108812	4108813	rs113523948	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs113523948-C	0.063	3E-21	(conditional)	0.578	[0.46-0.69]	Illumina [11270530] (imputed)	N
616	chr6_cox_hap2	4108913	4108914	rs112927854	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Low density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	6p21.32	HLA-DQB1, HLA-DQA2	rs112927854-?		4E-9		0.0728	[0.049-0.097] unit decrease	Illumina [31500000] (imputed)	N
616	chr6_cox_hap2	4108943	4108944	rs9275292	27286809	Ligthart S	2016-06-10	BMC Genomics	Bivariate genome-wide association study identifies novel pleiotropic loci for lipids and inflammation.	C-reactive protein levels or LDL-cholesterol levels (pleiotropy)	65,000 individuals (C-reactive protein), 95,454 individuals (LDL-cholesterol)	NA	6p21.32	HLA-DQB1	rs9275292-A	NR	3E-8				NR [2501749] (imputed)	N
616	chr6_cox_hap2	4109051	4109052	rs13205804	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	6p21.32	intergenic	rs13205804-A	0.8815	3E-21		0.0391	[0.031-0.047] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
616	chr6_cox_hap2	4109285	4109286	rs3129720	23472185	Mero IL	2013-03-05	PLoS One	Oligoclonal band status in Scandinavian multiple sclerosis patients is associated with specific genetic risk alleles.	Multiple sclerosis (OCB status)	1,367 European ancestry OCB positive cases, 161 European ancestry OCB negative cases, 428 European ancestry controls	NA	6p21.32	HLA-DQB1	rs3129720-?	NR	5E-15	(OCB positive vs. controls)	1.91	[1.62-2.24]	Illumina [495970]	N
616	chr6_cox_hap2	4109285	4109286	rs3129720	22493691	Eriksson N	2012-04-06	PLoS One	Novel associations for hypothyroidism include known autoimmune risk loci.	Hypothyroidism	3,736 European ancestry cases, 35,546 European ancestry controls	NA	6p21.32	HLA-DQA2, HLA-DQB1, HLA-DRB9, HLA-DRB5, HLA-DRB1, HLA-DQA1	rs3129720-C	0.764	5E-7		1.16	(1.10-1.23)	Illumina [870065]	N
616	chr6_cox_hap2	4109418	4109419	rs17427445	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs17427445-A	0.2	1E-8		4.23	[3.24-5.52]	Illumina [NR] (imputed)	N
616	chr6_cox_hap2	4109505	4109506	rs6457617	31050781	Zhao SX	2019-05-03	JAMA Netw Open	Assessment of Molecular Subtypes in Thyrotoxic Periodic Paralysis and Graves Disease Among Chinese Han Adults: A Population-Based Genome-Wide Association Study.	Thyrotoxic hypokalemic periodic paralysis and Graves disease	171 Han Chinese ancestry cases, 2,160 Han Chinese ancestry controls	362 Han Chinese ancestry cases, 1,089 Han Chinese ancestry controls	6p21.32	HLA-DQB1, HLA-DQA2	rs6457617-?	0.47	2E-17		1.74	[1.53-1.97]	Illumina [2752055] (imputed)	N
616	chr6_cox_hap2	4109505	4109506	rs6457617	25616667	Goris A	2015-01-22	Brain	Genetic variants are major determinants of CSF antibody levels in multiple sclerosis.	Immunoglobulin G index levels in multiple sclerosis	773 European ancestry Individuals, 165 Individuals	2,072 Individuals	6p21.32	HLA-DQA1	rs6457617-A	NR	7E-17		0.127	[NR] unit decrease	NR [485236]	N
616	chr6_cox_hap2	4109505	4109506	rs6457617	21841780	Chu X	2011-08-14	Nat Genet	A genome-wide association study identifies two new risk loci for Graves' disease.	Graves' disease	1,468 Chinese ancestry cases, 1,490 Chinese ancestry controls	3,994 Chinese ancestry cases, 3,510 Chinese ancestry controls	6p21.32	HLA, DRB1, DQA1, DQB1	rs6457617-T	0.45	7E-33		1.4	[1.32-1.48]	Illumina [486049]	N
616	chr6_cox_hap2	4109505	4109506	rs6457617	21750679	Allanore Y	2011-07-07	PLoS Genet	Genome-wide scan identifies TNIP1, PSORS1C1, and RHOB as novel risk loci for systemic sclerosis.	Systemic sclerosis	564 European ancestry cases, 1,776 European ancestry controls	1,682 European ancestry cases, 3,926 European ancestry controls	6p21.32	HLA, DQB1	rs6457617-T	0.50	2E-37		1.61	[1.49-1.72]	Illumina [489814]	N
616	chr6_cox_hap2	4109505	4109506	rs6457617	20383147	Radstake TR	2010-04-11	Nat Genet	Genome-wide association study of systemic sclerosis identifies CD247 as a new susceptibility locus.	Systemic sclerosis	2,296 European ancestry cases, 5,171 European ancestry controls	2,753 European ancestry cases, 4,569 European ancestry controls	6p21.32	HLA-DQB1	rs6457617-?	0.53	4E-17		1.37	[1.28-1.47]	Illumina [279621]	N
616	chr6_cox_hap2	4109505	4109506	rs6457617	18668548	Julia A	2008-08-01	Arthritis Rheum	Genome-wide association study of rheumatoid arthritis in the Spanish population: KLF12 as a risk locus for rheumatoid arthritis susceptibility.	Rheumatoid arthritis	400 European ancestry cases, 400 European ancestry controls	410 European ancestry cases, 394 European ancestry controls	6p21.32	HLA-DQA2, HLA-DQA1	rs6457617-?	NR	1E-9				Illumina [299918]	N
616	chr6_cox_hap2	4109505	4109506	rs6457617	17554300	Wellcome Trust Case Control Consortium	2007-06-07	Nature	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Rheumatoid arthritis	1,860 European ancestry cases, 2,938 European ancestry controls	NA	6p21.32	MHC	rs6457617-T	0.49	5E-75		2.36	[1.97-2.84]	Affymetrix [469557]	N
616	chr6_cox_hap2	4109590	4109591	rs34677551	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs34677551-C	0.2	1E-8		4.23	[3.24-5.52]	Illumina [NR] (imputed)	N
616	chr6_cox_hap2	4109608	4109609	rs34392107	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	6p21.32	HLA-DQB1	rs34392107-G	0.883508	6E-45		0.0459707	[0.04-0.052] unit decrease	Affymetrix [NR] (imputed)	N
616	chr6_cox_hap2	4109653	4109654	rs6457620	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	6p21.32	HLA locus	rs6457620-C	0.51	2E-16		0.029	[NR] unit decrease	Affymetrix, Illumina [2834208] (imputed)	N
616	chr6_cox_hap2	4109653	4109654	rs6457620	18794853	Raychaudhuri S	2008-09-14	Nat Genet	Common variants at CD40 and other loci confer risk of rheumatoid arthritis.	Rheumatoid arthritis	3,393 European ancestry cases, 12,460 European ancestry controls	3,929 European ancestry cases, 5,807 European ancestry controls	6p21.32	HLA-DRB1	rs6457620-?	0.50	4E-186		2.55	[2.40-2.71]	Affymetrix, Illumina [at least 315971] (imputed)	N
616	chr6_cox_hap2	4109692	4109693	rs35900855	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs35900855-G	0.2	1E-8		4.23	[3.24-5.52]	Illumina [NR] (imputed)	N
616	chr6_cox_hap2	4109986	4109987	rs7745040	29534301	Nishida N	2018-03-13	Hepatology	Key HLA-DRB1-DQB1 haplotypes and role of the BTNL2 gene for response to a hepatitis B vaccine.	Response to hepatitis B vaccine	107 Japanese ancestry low responder individuals, 351 Japanese ancestry intermediate responder individuals, 735 Japanese ancestry high responder individuals	NA	6p21.32	HLA-DQA2	rs7745040-?		2E-10		0.162	unit decrease	Affymetrix [427664]	N
616	chr6_cox_hap2	4110112	4110113	rs2647012	33649182	Penova M	2021-03-01	Proc Natl Acad Sci U S A	Genome wide association study of HTLV-1-associated myelopathy/tropical spastic paraparesis in the Japanese population.	HTLV-1 associated myelopathy	731 Japanese ancestry cases, 846 Japanese ancestry controls	NA	6p21.32		rs2647012-T	0.17	5E-7		0.56	[0.45-0.7]	Illumina [126394]	N
616	chr6_cox_hap2	4110112	4110113	rs2647012	24925725	Chung SA	2014-06-12	J Am Soc Nephrol	Lupus nephritis susceptibility loci in women with systemic lupus erythematosus.	Lupus nephritis in systemic lupus erythematosus	588 European ancestry cases, 1,412 European ancestry controls	NA	6p21.32	intergenic	rs2647012-?	NR	3E-7	(Additive)	1.52	[1.3-1.75]	Affymetrix, Illumina [1621689] (imputed)	N
616	chr6_cox_hap2	4110112	4110113	rs2647012	21533074	Smedby KE	2011-04-21	PLoS Genet	GWAS of follicular lymphoma reveals allelic heterogeneity at 6p21.32 and suggests shared genetic susceptibility with diffuse large B-cell lymphoma.	Follicular lymphoma	379 European ancestry cases, 791 European ancestry controls	1,049 European ancestry cases, 3,952 European ancestry controls	6p21.32	HLA-DQB1	rs2647012-G	0.56	2E-21		1.56	[1.43-1.72]	Illumina [298168]	N
616	chr6_cox_hap2	4110112	4110113	rs2647012	21408207	Chung SA	2011-03-03	PLoS Genet	Differential genetic associations for systemic lupus erythematosus based on anti-dsDNA autoantibody production.	Systemic lupus erythematosus	811 anti-dsDNA positive European ancestry cases, 906 anti-dsDNA negative European ancestry cases, 4,813 European ancestry controls	NA	6p21.32	HLA-DQA2, HLA-DQA1	rs2647012-A	0.44	8E-6	(case-only)	1.38	[1.20-1.59]	Illumina [421318] (imputed)	N
616	chr6_cox_hap2	4110282	4110283	rs115255544	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs115255544-G	0.2	1E-8		4.23	[3.24-5.52]	Illumina [NR] (imputed)	N
616	chr6_cox_hap2	4110445	4110446	rs116303320	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Total cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	6p21.32	HLA-DQB1, HLA-DQA2	rs116303320-?		5E-13		0.0603	[0.044-0.077] unit decrease	Illumina [31500000] (imputed)	N
616	chr6_cox_hap2	4110534	4110535	rs2647003	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.32	NR	rs2647003-?	NR	3E-13				Affymetrix [~ 8270000] (imputed)	N
616	chr6_cox_hap2	4110614	4110615	rs9357152	21896673	Chen D	2011-09-10	Hum Mol Genet	Genome-wide association study of HPV seropositivity.	HPV seropositivity	1,286 European ancestry lung cancer cases, 679 European ancestry head and neck cancer cases, 811 European ancestry kidney cancer cases, 2,035 European ancestry controls	1,307 Hispanic head and neck cancer cases, 1,037 Hispanic controls		HLA-DQB1	rs9357152-G	0.33	1E-14				Illumina [316015]	N
616	chr6_cox_hap2	4110769	4110770	rs17206126	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs17206126-T	0.972723	3E-12		0.087804	[0.063-0.112] unit decrease	NR [11722792] (imputed)	N
616	chr6_cox_hap2	4110779	4110780	rs17212462	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs17212462-T	0.2	1E-8		4.23	[3.24-5.52]	Illumina [NR] (imputed)	N
616	chr6_cox_hap2	4110904	4110905	rs17212483	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs17212483-T	0.2	9E-9		4.27	[3.27-5.58]	Illumina [NR] (imputed)	N
616	chr6_cox_hap2	4111074	4111075	rs10484561	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs10484561-G	0.2	2E-8		4.22	[3.22-5.52]	Illumina [NR] (imputed)	N
616	chr6_cox_hap2	4111074	4111075	rs10484561	20639881	Conde L	2010-07-18	Nat Genet	Genome-wide association study of follicular lymphoma identifies a risk locus at 6p21.32.	Follicular lymphoma	681 European ancestry cases, 750 European ancestry controls	up to 3,164 European ancestry cases, 6,208 European ancestry controls	6p21.32	HLA-DQB1	rs10484561-G	0.11	1E-29	(FL)	1.95	[1.72-2.22]	Illumina [312768]	N
616	chr6_cox_hap2	4111341	4111342	rs17212553	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs17212553-T	0.2	1E-8		4.23	[3.24-5.52]	Illumina [NR] (imputed)	N
616	chr6_cox_hap2	4111949	4111950	rs9275319	23242368	Jiang DK	2012-12-16	Nat Genet	Genetic variants in STAT4 and HLA-DQ genes confer risk of hepatitis B virus-related hepatocellular carcinoma.	Hepatocellular carcinoma in hepatitis B infection	1,161 Chinese ancestry cases, 1,353 Chinese ancestry controls	4,319 Chinese ancestry cases, 4,966 Chinese ancestry controls	6p21.32	HLA-DQ	rs9275319-A	0.88	3E-17		1.49	[1.36-1.63]	Illumina [1672517] (imputed)	N
616	chr6_cox_hap2	4112180	4112181	rs1794282	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.32	BTNL2, XXbac-BPG246D15.9, XXbac-BPG154L12.5, XXbac-BPG154L12.4, C6orf10, HNRNPA1P2, RNU6-603P, HLA-DRA, HLA-DRB9, HLA-DOB	rs1794282-T	0.08080808	3E-19	(EA, MHC class I polypeptide-related sequence B)	0.7066	[0.56-0.86] unit decrease	Affymetrix [509946]	N
616	chr6_cox_hap2	4112314	4112315	rs9275326	28892059	Chang D	2017-09-11	Nat Genet	A meta-analysis of genome-wide association studies identifies 17 new Parkinson's disease risk loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	5,851 European ancestry cases, 5,866 European ancestry controls	6p21.32	HLA-DRB6, HLA-DQA1	rs9275326-C	0.895	1E-13		1.1764705	[1.12-1.22]	Illumina [11933700] (imputed)	N
616	chr6_cox_hap2	4112314	4112315	rs9275326	25064009	Nalls MA	2014-07-27	Nat Genet	Large-scale meta-analysis of genome-wide association data identifies six new risk loci for Parkinson's disease.	Parkinson's disease	13,708 European ancestry cases, 95,282 European ancestry controls	5,353 European ancestry cases, 5,551 European ancestry controls	6p21.32	HLA-DQB	rs9275326-C	0.906	1E-12		1.21	[1.16-1.26]	Illumina [7893274] (imputed)	N
616	chr6_cox_hap2	4112721	4112722	rs17427564	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs17427564-C	0.2	1E-8		4.23	[3.24-5.52]	Illumina [NR] (imputed)	N
616	chr6_cox_hap2	4112761	4112762	rs9275334	26272072	Jiang X	2015-08-13	Rheumatology (Oxford)	An Immunochip-based interaction study of contrasting interaction effects with smoking in ACPA-positive versus ACPA-negative rheumatoid arthritis.	ACPA-positive rheumatoid arthritis (smoking interaction)	340 European ancestry never-smoker cases, 493 European ancestry ever-smoker cases, 746 European ancestry never-smoker controls, 994 European ancestry ever-smoker controls	187 European ancestry never-smoker cases, 421 European ancestry ever-smoker cases, 461 European ancestry never-smoker controls, 447 European ancestry ever-smoker controls	6p21.32	NR	rs9275334-?	NR	2E-6	(adjusted for HLA shared epitope)	1.724138	[1.22-2.94]	Illumina [133648] (imputed)	N
616	chr6_cox_hap2	4112825	4112826	rs1794280	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hyperthyroidism	3,557 European ancestry cases, 456,942 European ancestry controls, 994 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	6p21.32		rs1794280-T	NR	2E-44		0.5463	[0.47-0.62] unit increase	Affymetrix, Illumina [25841580] (imputed)	N
616	chr6_cox_hap2	4112825	4112826	rs1794280	30854688	Wang C	2019-03-10	Hepatology	Genome Wide Association Studies of Specific Antinuclear Autoantibody Sub-phenotypes in Primary Biliary Cholangitis.	Anti-sp100 seropositivity in primary biliary cholangitis	211 Han Chinese ancestry cases, 711 Han Chinese ancestry controls	234 Han Chinese ancestry cases, 1,018 Han Chinese ancestry controls	6p21.32	NR	rs1794280-T	0.181	6E-28		3.89	[3.05-4.96]	Illumina [794531]	N
616	chr6_cox_hap2	4113018	4113019	rs17427599	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (anti-inflammatory and antirheumatic products, non-steroids)	29,694 East Asian ancestry cases, 149,032 East Asian ancestry controls	NA	6p21.32		rs17427599-T	0.278563857	1E-13		0.07483624	[0.055-0.095] unit increase	Illumina [13429980] (imputed)	N
616	chr6_cox_hap2	4113127	4113128	rs1794514	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Autoimmune hepatitis	821 European ancestry cases, 484,413 European ancestry controls, 85 East Asian ancestry cases, 166,529 East Asian ancestry controls	NA	6p21.32		rs1794514-C	NR	6E-14		0.5013	[0.37-0.63] unit increase	Affymetrix, Illumina [25843756] (imputed)	N
616	chr6_cox_hap2	4113160	4113161	rs188230545	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	124,341 East Asian ancestry individuals	NA	6p21.32		rs188230545-T	0.154874	1E-8		0.0301327	[0.02-0.04] unit increase	Illumina [13476323] (imputed)	N
616	chr6_cox_hap2	4113174	4113175	rs3104394	32534018	Liu X	2020-06-10	Brain Behav Immun	Genetic factors underlying the bidirectional relationship between autoimmune and mental disorders - findings from a Danish population-based study.	Autoimmune traits	1,383 Danish ancestry cases, 62,656 Danish ancestry controls	NA	6p21.32	NR	rs3104394-G	0.16	3E-20		0.57	[0.50-0.65]	NR [7721839] (imputed)	N
616	chr6_cox_hap2	4113250	4113251	rs2133037	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	IgG levels	15,536 Icelandic ancestry individuals	2,158 Swedish ancestry individuals	6p21.32	HLA-DQB1	rs2133037-A	0.0524	2E-14		0.19	NR SD units decrease	Illumina [21568490] (imputed)	N
616	chr6_cox_hap2	4113317	4113318	rs9275349	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	Systemic lupus erythematosus	1,639 East Asian ancestry cases, 2,410 East Asian ancestry controls	NA			rs9275349-C	NR	5E-25		0.5726	[0.46-0.68] unit decrease	Illumina [NR] (imputed)	N
616	chr6_cox_hap2	4113408	4113409	rs2856723	28921602	Lee MH	2017-09-16	Hepatology	Human leukocyte antigen variants and risk of hepatocellular carcinoma modified by hepatitis C virus genotypes: A genome-wide association study.	Hepatocellular carcinoma in hepatitis C infection	502 Chinese ancestry cases, 749 Chinese ancestry controls	669 Chinese ancestry cases, 429 Chinese ancestry controls	6p21.32	HLA-DQB1	rs2856723-?		3E-43		2.68	[2.32-3.09]	Affymetrix [576032]	N
616	chr6_cox_hap2	4113541	4113542	rs9275358	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p21.32	HLA-DQB1	rs9275358-G	0.475	3E-7		0.083	[0.052-0.114] unit decrease	Affymetrix, Illumina [7374092] (imputed)	N
616	chr6_cox_hap2	4113556	4113557	rs2647044	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	6p21.32	BRD2, BTNL2, C6orf10, HCG23, HLA-DMA, HLA-DMB, HLA-DOA, HLA-DOB, HLA-DPA1, HLA-DQA1, HLA-DQA2, HLA-DQB1, HLA-DQB2, HLA-DRA, HLA-DRB1, HLA-DRB5, HLA-DRB6, LOC100294145, NOTCH4, PSMB8, PSMB9, TAP1, TAP2, TAPSAR1	rs2647044-A	0.14736	4E-15		1.1522182	[1.12-1.19]	Affymetrix [8274727] (imputed)	N
616	chr6_cox_hap2	4113556	4113557	rs2647044	21946350	Soler Artigas M	2011-09-25	Nat Genet	Genome-wide association and large-scale follow up identifies 16 new loci influencing lung function.	Pulmonary function	48,201 European ancestry individuals	46,411 European ancestry individuals	6p21.32	HLA-DQB1	rs2647044-G	NR	6E-6	(FEV1/FVC)	0.044	[0.024-0.064] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
616	chr6_cox_hap2	4113556	4113557	rs2647044	17632545	Hakonarson H	2007-07-15	Nature	A genome-wide association study identifies KIAA0350 as a type 1 diabetes gene.	Type 1 diabetes	467 European ancestry trios, 561 European ancestry cases, 1,143 European ancestry controls	390 European ancestry trios, 1,333 European ancestry cases from 549 families	6p21.32	HLA-DRB1	rs2647044-A	0.13	1E-16		8.3	[6.97-9.89]	Illumina [543071]	N
616	chr6_cox_hap2	4113610	4113611	rs36030018	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs36030018-C	0.109	3E-36	(conditional)	1.586	[1.51-1.66]	Illumina [11270530] (imputed)	N
616	chr6_cox_hap2	4113677	4113678	rs2856721	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	6p21.32		rs2856721-C	0.467255784	1E-9		0.056245904	[0.038-0.074] unit decrease	Illumina [13429769] (imputed)	N
616	chr6_cox_hap2	4113677	4113678	rs2856721	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	46,511 Asian ancestry cases, 169,776 Asian ancestry controls	NA	6p21.32	NR	rs2856721-C	0.4659	5E-10		0.0572	[0.039-0.075] unit decrease	Affymetrix, Illumina [1077427] (imputed)	N
616	chr6_cox_hap2	4113747	4113748	rs2647045	23349640	Vijai J	2013-01-17	PLoS Genet	Susceptibility loci associated with specific and shared subtypes of lymphoid malignancies.	Lymphoma	275 Follicular non-Hodgkin's Lymphoma cases, 269 diffuse large B-cell non-Hodgkin's Lymphoma cases, 198 other non-Hodgkin's Lymphoma cases, 202 Hodgkin's Lymphoma cases, 4,044 controls	202 European ancestry Follicular non-Hodgkin's Lymphoma cases, 367 European ancestry diffuse large B-cell non-Hodgkin's Lymphoma cases, 577 European ancestry other non-Hodgkin's Lymphoma cases, 99 European ancestry Hodgkin's Lymphoma cases, 2,596 European ancestry controls	6p21.32	HLA-DQA2, HLA-DQB1	rs2647045-?	NR	4E-10	(FL)	1.69	[NR]	Affymetrix [530583]	N
616	chr6_cox_hap2	4113970	4113971	rs2858310	27286809	Ligthart S	2016-06-10	BMC Genomics	Bivariate genome-wide association study identifies novel pleiotropic loci for lipids and inflammation.	C-reactive protein levels or total cholesterol levels (pleiotropy)	65,000 individuals (C-reactive protein), 100,184 individuals (total cholesterol)	NA	6p21.32	HLA-DQB1	rs2858310-A	NR	4E-12				NR [2501549] (imputed)	N
616	chr6_cox_hap2	4113983	4113984	rs2647046	23349640	Vijai J	2013-01-17	PLoS Genet	Susceptibility loci associated with specific and shared subtypes of lymphoid malignancies.	Lymphoma	275 Follicular non-Hodgkin's Lymphoma cases, 269 diffuse large B-cell non-Hodgkin's Lymphoma cases, 198 other non-Hodgkin's Lymphoma cases, 202 Hodgkin's Lymphoma cases, 4,044 controls	202 European ancestry Follicular non-Hodgkin's Lymphoma cases, 367 European ancestry diffuse large B-cell non-Hodgkin's Lymphoma cases, 577 European ancestry other non-Hodgkin's Lymphoma cases, 99 European ancestry Hodgkin's Lymphoma cases, 2,596 European ancestry controls	6p21.32	HLA-DQA2, HLA-DQB1	rs2647046-?	NR	2E-6	(NHL)	1.25	[1.14-1.37]	Affymetrix [530583]	N
616	chr6_cox_hap2	4114086	4114087	rs3135002	29404672	Roshandel D	2018-02-05	Diabetologia	Meta-genome-wide association studies identify a locus on chromosome 1 and multiple variants in the MHC region for serum C-peptide in type 1 diabetes.	Random C-peptide levels in type I diabetes	1,497 European ancestry individuals	NA	6p21.32	MHC	rs3135002-A	0.03	3E-8				Illumina [8320327] (imputed)	N
616	chr6_cox_hap2	4114086	4114087	rs3135002	29404672	Roshandel D	2018-02-05	Diabetologia	Meta-genome-wide association studies identify a locus on chromosome 1 and multiple variants in the MHC region for serum C-peptide in type 1 diabetes.	C-peptide levels in type I diabetes	3,479 European ancestry individuals	NA	6p21.32	MHC	rs3135002-A	0.03	7E-8				Illumina [7988630] (imputed)	N
616	chr6_cox_hap2	4114665	4114666	rs1612904	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of HDL particles	115,082 European ancestry individuals	NA	6p21.32		rs1612904-C	0.38135	1E-10		0.0256884	[0.018-0.033] unit decrease	NR [11722792] (imputed)	N
616	chr6_cox_hap2	4114665	4114666	rs1612904	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Perceived unattractiveness to mosquitoes	16,576 European ancestry individuals	NA	6p21.32	intergenic	rs1612904-C	NR	1E-8		0.136111	[0.089-0.183] unit increase	Illumina [7433384] (imputed)	N
616	chr6_cox_hap2	4114665	4114666	rs1612904	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.32	Intergenic	rs1612904-C	NR	1E-13		0.0245272	[0.018-0.031] unit increase	Illumina [13520550] (imputed)	N
616	chr6_cox_hap2	4114802	4114803	rs9275390	21779181	Gorlova O	2011-07-14	PLoS Genet	Identification of novel genetic markers associated with clinical phenotypes of systemic sclerosis through a genome-wide association strategy.	Systemic sclerosis	2,296 European ancestry cases, 5,172 European ancestry controls	3,175 European ancestry cases, 4,210 European ancestry controls	6p21.32	HLA-DQB1	rs9275390-?	0.75	1E-7	(ATA positive)	1.61	[1.35-1.92]	Illumina [NR] (imputed)	N
616	chr6_cox_hap2	4114802	4114803	rs9275390	21779181	Gorlova O	2011-07-14	PLoS Genet	Identification of novel genetic markers associated with clinical phenotypes of systemic sclerosis through a genome-wide association strategy.	Systemic sclerosis	2,296 European ancestry cases, 5,172 European ancestry controls	3,175 European ancestry cases, 4,210 European ancestry controls	6p21.32	HLA-DQB1	rs9275390-?	0.25	3E-54	(ACA positive)	2.38	[2.13-2.67]	Illumina [NR] (imputed)	N
616	chr6_cox_hap2	4115019	4115020	rs11752643	31213470	Moon JY	2019-06-18	Diabetes Care	A Genome-Wide Association Study Identifies Blood Disorder-Related Variants Influencing Hemoglobin A1c With Implications for Glycemic Status in U.S. Hispanics/Latinos.	Glycated hemoglobin levels	9,636 Hispanic/Latino individuals	4,777 Hispanic/Latino individuals	6p21.32	HLA-DQA2	rs11752643-T	0.017	2E-6		0.096	[0.061-0.131] % increase	Illumina [11510031] (imputed)	N
616	chr6_cox_hap2	4115019	4115020	rs11752643	21971053	Takeuchi F	2011-10-05	Eur J Hum Genet	Genome-wide association study of coronary artery disease in the Japanese.	Coronary heart disease	806 Japanese ancestry cases, 1,337 Japanese ancestry controls	3,593 Japanese ancestry cases, 6,335 Japanese ancestry controls	6p21.32	HLA, DRB-DQB	rs11752643-T	0.06	5E-7		1.26	[1.15-1.38]	Illumina [451382]	N
616	chr6_cox_hap2	4115413	4115414	rs2647050	26030696	Cho MH	2015-06-01	Am J Respir Crit Care Med	A Genome-Wide Association Study of Emphysema and Airway Quantitative Imaging Phenotypes.	Emphysema imaging phenotypes	5,385 European ancestry chronic obstructive pulmonary disease cases, 901 African American chronic obstructive pulmonary disease cases, 3,613 European ancestry controls, 2,132 African American controls	NA	6p21.32	HLA-DQB1	rs2647050-T	NR	1E-6	(Perc15, All)	1.6	[0.66-2.54] unit increase	Illumina [7600000] (imputed)	N
616	chr6_cox_hap2	4115601	4115602	rs9275406	23918589	Negi S	2013-12-01	Arthritis Rheum	A genome-wide association study reveals ARL15, a novel non-HLA susceptibility gene for rheumatoid arthritis in North Indians.	Rheumatoid arthritis	706 North Indian ancestry cases, 761 North Indian ancestry controls	927 North Indian ancestry cases, 1,148 North Indian ancestry controls	6p21.32	HLA-DQA2, HLA-DQB1, C6orf10, HLA-DQA1	rs9275406-T	0.17	3E-12		2.1	[1.72-2.68]	Illumina [559348]	N
616	chr6_cox_hap2	4115782	4115783	rs3135001	32276964	Shete S	2020-04-10	Cancer Res	A genome-wide association study identifies two novel susceptible regions for squamous cell carcinoma of the head and neck.	Head and neck squamous cell carcinoma	2,171 European ancestry cases, 4,493 European ancestry controls	5,205 European ancestry cases, 3,232 European ancestry controls	6p21.32	HLA-DQB1	rs3135001-C	0.79	1E-16		1.2987013	[1.22-1.37]	Illumina [7858089] (imputed)	N
616	chr6_cox_hap2	4115895	4115896	rs2856718	25802187	Jiang DK	2015-04-28	Hepatology	Genetic variants in five novel loci including CFB and CD40 predispose to chronic hepatitis B.	Chronic hepatitis B infection	2,514 Chinese ancestry cases, 1,130 Chinese ancestry controls	6,600 Chinese ancestry cases, 8,127 Chinese ancestry controls	6p21.32	HLA-DQB1	rs2856718-C	0.55	7E-28		1.28	[1.22-1.33]	Illumina [3680900] (imputed)	N
616	chr6_cox_hap2	4115895	4115896	rs2856718	23760081	Kim YJ	2013-06-10	Hum Mol Genet	A genome-wide association study identified new variants associated with the risk of chronic hepatitis B.	Chronic hepatitis B infection	400 Korean ancestry cases, 1,000 Korean ancestry controls	971 Korean ancestry cases, 1,938 Korean ancestry controls	6p21.32	HLA-DQ	rs2856718-?	NR	2E-24		1.6	[1.46-1.75]	Illumina [719265]	N
616	chr6_cox_hap2	4115895	4115896	rs2856718	21750111	Mbarek H	2011-07-12	Hum Mol Genet	A genome-wide association study of chronic hepatitis B identified novel risk locus in a Japanese population.	Hepatitis B	458 Japanese ancestry cases, 2,056 Japanese ancestry controls	2,209 Japanese ancestry cases, 4,440 Japanese ancestry controls	6p21.32	HLA-DQB1	rs2856718-A	0.48	4E-37		1.56	[1.45-1.67]	Illumina [423627]	N
616	chr6_cox_hap2	4115948	4115949	rs2856717	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	6p21.32	HLA-DQB1, HLA-DQA1, HLA-DRB1	rs2856717-G	0.77	5E-10	(East Asian)	1.38	[NR]	Illumina [> 1000000] (imputed)	N
616	chr6_cox_hap2	4115948	4115949	rs2856717	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	6p21.32	HLA-DQB1, HLA-DQA1, HLA-DRB1	rs2856717-G	0.62	5E-8	(EA)	1.21	[NR]	Illumina [> 1000000] (imputed)	N
616	chr6_cox_hap2	4115948	4115949	rs2856717	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	6p21.32	HLA-DQB1, HLA-DQA1, HLA-DRB1	rs2856717-G	0.62	1E-15		1.27	[NR]	Illumina [> 1000000] (imputed)	N
616	chr6_cox_hap2	4116473	4116474	rs34492195	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs34492195-A	0.2	1E-8		4.23	[3.24-5.52]	Illumina [NR] (imputed)	N
616	chr6_cox_hap2	4116537	4116538	rs2647051	30593799	Vergara C	2018-12-26	Gastroenterology	Multi-Ancestry Genome-Wide Association Study of Spontaneous Clearance of Hepatitis C Virus.	Hepatitis C (spontaneous viral clearance)	701 European ancestry cases, 1,035 European ancestry controls	NA	6p21.32	HLA-DQB1, HLA-DQA2	rs2647051-C	0.64	1E-9		1.79	NR	Illumina [8968220] (imputed)	N
616	chr6_cox_hap2	4116618	4116619	rs9275428	28706201	Wei WH	2017-07-13	Sci Rep	Genotypic variability based association identifies novel non-additive loci DHCR7 and IRF4 in sero-negative rheumatoid arthritis.	Sero-negative rheumatoid arthritis	3,323 European ancestry cases, 15,785 European ancestry controls	NA	6p21.32	HLA-DQB1	rs9275428-?	NR	2E-24				Illumina [107144]	N
616	chr6_cox_hap2	4116743	4116744	rs13192471	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Non-melanoma skin cancer	5,912 European ancestry cases, 181,740 European ancestry controls		6p21.32	NR	rs13192471-T	NR	7E-8		1.1493434	[1.09-1.21]	Affymetrix [5734850] (imputed)	N
616	chr6_cox_hap2	4116743	4116744	rs13192471	20453841	Kochi Y	2010-05-09	Nat Genet	A regulatory variant in CCR6 is associated with rheumatoid arthritis susceptibility.	Rheumatoid arthritis	2,303 Japanese ancestry cases, 3,380 Japanese ancestry controls	4,768 Japanese ancestry cases, 17,359 Japanese ancestry controls	6p21.32	HLA-DRB1	rs13192471-G	0.22	2E-58		1.97	[1.82-2.14]	Illumina [393217]	N
616	chr6_cox_hap2	4116847	4116848	rs1794511	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	IgD on IgD+ CD24+ B cell	3,656 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs1794511-G	0.25863	7E-13		0.2439	[0.18-0.31] unit decrease	Illumina [18238197] (imputed)	N
616	chr6_cox_hap2	4116888	4116889	rs1794275	22197929	Yu XQ	2011-12-25	Nat Genet	A genome-wide association study in Han Chinese identifies multiple susceptibility loci for IgA nephropathy.	IgA nephropathy	1,434 Han Chinese ancestry cases, 4,270 Han Chinese ancestry controls	2,703 Han Chinese ancestry cases, 3,464 Han Chinese ancestry controls	6p21.32	HLA-DQA/B	rs1794275-A	0.15	3E-13		1.3	[1.21-1.39]	Illumina [444882]	N
616	chr6_cox_hap2	4117611	4117612	rs6907732	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on CD33dim HLA DR+ CD11b+	1,634 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs6907732-G	0.45576	3E-8		0.2461	[0.16-0.33] unit increase	Illumina [16998734] (imputed)	N
616	chr6_cox_hap2	4117729	4117730	rs3134995	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	6p21.32	HLA-DQB1, HLA-DQA2	rs3134995-T	0.242	4E-26		0.0648904	[0.053-0.077] unit decrease	Illumina [13520550] (imputed)	N
616	chr6_cox_hap2	4118280	4118281	rs9275477	34873335	van Rheenen W	2021-12-06	Nat Genet	Common and rare variant association analyses in amyotrophic lateral sclerosis identify 15 risk loci with distinct genetic architectures and neuron-specific biology.	Amyotrophic lateral sclerosis	27,205 European ancestry cases, 110,881 European ancestry controls, 2,407 East Asian ancestry cases, 11,775 East Asian ancestry controls	NA			rs9275477-C	NR	4E-12		0.142	[0.1-0.18] unit decrease	Illumina [10461755] (imputed)	N
616	chr6_cox_hap2	4118280	4118281	rs9275477	34873335	van Rheenen W	2021-12-06	Nat Genet	Common and rare variant association analyses in amyotrophic lateral sclerosis identify 15 risk loci with distinct genetic architectures and neuron-specific biology.	Amyotrophic lateral sclerosis	27,205 European ancestry cases, 110,881 European ancestry controls	NA	6p21.32		rs9275477-C	0.096	6E-12		0.143	[0.1-0.18] unit decrease	Illumina [10461755] (imputed)	N
616	chr6_cox_hap2	4119213	4119214	rs9275495	26272072	Jiang X	2015-08-13	Rheumatology (Oxford)	An Immunochip-based interaction study of contrasting interaction effects with smoking in ACPA-positive versus ACPA-negative rheumatoid arthritis.	ACPA-positive rheumatoid arthritis (smoking interaction)	340 European ancestry never-smoker cases, 493 European ancestry ever-smoker cases, 746 European ancestry never-smoker controls, 994 European ancestry ever-smoker controls	187 European ancestry never-smoker cases, 421 European ancestry ever-smoker cases, 461 European ancestry never-smoker controls, 447 European ancestry ever-smoker controls	6p21.32	NR	rs9275495-?	NR	2E-6	(adjusted for HLA shared epitope)	1.724138	[1.22-2.94]	Illumina [133648] (imputed)	N
616	chr6_cox_hap2	4119365	4119366	rs9275497	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6p21.32	MTCO3P1	rs9275497-G	0.239038	1E-18		0.025688766	[0.02-0.031] unit increase	Affymetrix [93095623] (imputed)	N
616	chr6_cox_hap2	4119864	4119865	rs35332745	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs35332745-C	0.2	2E-8		4.11	[3.16-5.35]	Illumina [NR] (imputed)	N
616	chr6_cox_hap2	4119968	4119969	rs9275511	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Adult onset asthma or type 2 diabetes	33,418 European ancestry asthma cases, 393,186 European ancestry asthma controls, 159,208 European ancestry diabetes cases and controls	NA	6p21.32	NR	rs9275511-?	NR	4E-18				Affymetrix [up to 8270000] (imputed)	N
616	chr6_cox_hap2	4120282	4120283	rs9275516	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs9275516-A	0.48	1E-8		0.18	[0.13-0.25]	Illumina [NR] (imputed)	N
616	chr6_cox_hap2	4120364	4120365	rs17206287	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs17206287-A	0.858	2E-12		1.2	[1.15-1.25]	Illumina [11270530] (imputed)	N
616	chr6_cox_hap2	4120376	4120377	rs1794265	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	NR	rs1794265-C	0.945894807901907	8E-6	(IGP1)	0.3014	[0.17-0.43] unit decrease	Illumina [~ 2500000] (imputed)	N
616	chr6_cox_hap2	4120376	4120377	rs1794265	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	NR	rs1794265-C	0.945736455079007	1E-6	(IGP19)	0.3272	[0.2-0.46] unit decrease	Illumina [~ 2500000] (imputed)	N
616	chr6_cox_hap2	4120376	4120377	rs1794265	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	NR	rs1794265-C	0.945425811930783	3E-7	(IGP41)	0.3448	[0.21-0.48] unit decrease	Illumina [~ 2500000] (imputed)	N
616	chr6_cox_hap2	4120706	4120707	rs17206350	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	MTCO3P1	rs17206350-C	NR	9E-9		0.0179759	[0.012-0.024] unit increase	Affymetrix [323858] (imputed)	N
616	chr6_cox_hap2	4120706	4120707	rs17206350	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	MTCO3P1	rs17206350-C	NR	4E-8		0.0171917	[0.011-0.023] unit increase	Affymetrix [127266] (imputed)	N
616	chr6_cox_hap2	4120706	4120707	rs17206350	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	MTCO3P1	rs17206350-C	NR	2E-8		0.0159877	[0.01-0.022] unit increase	Affymetrix [321114] (imputed)	N
616	chr6_cox_hap2	4120748	4120749	rs9275524	25608926	Betz RC	2015-01-22	Nat Commun	Genome-wide meta-analysis in alopecia areata resolves HLA associations and reveals two new susceptibility loci.	Alopecia areata	2,332 European ancestry cases and 5,233 European ancestry controls	764 European ancestry cases and 2,256 European ancestry controls	6p21.32	HLA-DQB1	rs9275524-C	NR	2E-60		1.92		Illumina [1233578] (imputed)	N
616	chr6_cox_hap2	4120748	4120749	rs9275524	23453885	Smoller JW	2013-02-27	Lancet	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NA	6p21.32	intergenic	rs9275524-T		2E-7	(Modelling analysis)	1.07	[1.04-1.09]	NR [1252901] (imputed)	N
616	chr6_cox_hap2	4121109	4121110	rs12525220	24782177	Jiang L	2014-05-01	Arthritis Rheumatol	Novel risk loci for rheumatoid arthritis in Han Chinese and congruence with risk variants in Europeans.	Rheumatoid arthritis	433 Han Chinese ancestry ACPA positive cases, 519 Han Chinese ancestry ACPA negative cases, 943 Han Chinese ancestry controls	1,032 Han Chinese ancestry ACPA positive cases, 1,100 Han Chinese ancestry ACPA negative cases, 2,553 Han Chinese ancestry controls	6p21.32	HLA-DQA2, MHC, HLA-DQB1	rs12525220-A	0.057	7E-14	(ACPA+ cases vs. all controls)	3.015	[NR]	Affymetrix [3441843] (imputed)	N
616	chr6_cox_hap2	4121109	4121110	rs12525220	24782177	Jiang L	2014-05-01	Arthritis Rheumatol	Novel risk loci for rheumatoid arthritis in Han Chinese and congruence with risk variants in Europeans.	Rheumatoid arthritis	433 Han Chinese ancestry ACPA positive cases, 519 Han Chinese ancestry ACPA negative cases, 943 Han Chinese ancestry controls	1,032 Han Chinese ancestry ACPA positive cases, 1,100 Han Chinese ancestry ACPA negative cases, 2,553 Han Chinese ancestry controls	6p21.32	HLA-DQA2, MHC, HLA-DQB1	rs12525220-A	0.057	3E-12	(all cases vs. all controls)	2.608	[NR]	Affymetrix [3441843] (imputed)	N
616	chr6_cox_hap2	4121109	4121110	rs12525220	24782177	Jiang L	2014-05-01	Arthritis Rheumatol	Novel risk loci for rheumatoid arthritis in Han Chinese and congruence with risk variants in Europeans.	Rheumatoid arthritis	433 Han Chinese ancestry ACPA positive cases, 519 Han Chinese ancestry ACPA negative cases, 943 Han Chinese ancestry controls	1,032 Han Chinese ancestry ACPA positive cases, 1,100 Han Chinese ancestry ACPA negative cases, 2,553 Han Chinese ancestry controls	6p21.32	HLA-DQA2, MHC, HLA-DQB1	rs12525220-A	0.057	2E-13	(ACPA- cases vs. all controls)	2.869	[NR]	Affymetrix [3441843] (imputed)	N
616	chr6_cox_hap2	4121162	4121163	rs9275530	26272072	Jiang X	2015-08-13	Rheumatology (Oxford)	An Immunochip-based interaction study of contrasting interaction effects with smoking in ACPA-positive versus ACPA-negative rheumatoid arthritis.	ACPA-positive rheumatoid arthritis (smoking interaction)	340 European ancestry never-smoker cases, 493 European ancestry ever-smoker cases, 746 European ancestry never-smoker controls, 994 European ancestry ever-smoker controls	187 European ancestry never-smoker cases, 421 European ancestry ever-smoker cases, 461 European ancestry never-smoker controls, 447 European ancestry ever-smoker controls	6p21.32	NR	rs9275530-?	NR	2E-6	(adjusted for HLA shared epitope)	1.724138	[1.23-2.94]	Illumina [133648] (imputed)	N
616	chr6_cox_hap2	4121273	4121274	rs9275532	26272072	Jiang X	2015-08-13	Rheumatology (Oxford)	An Immunochip-based interaction study of contrasting interaction effects with smoking in ACPA-positive versus ACPA-negative rheumatoid arthritis.	ACPA-positive rheumatoid arthritis (smoking interaction)	340 European ancestry never-smoker cases, 493 European ancestry ever-smoker cases, 746 European ancestry never-smoker controls, 994 European ancestry ever-smoker controls	187 European ancestry never-smoker cases, 421 European ancestry ever-smoker cases, 461 European ancestry never-smoker controls, 447 European ancestry ever-smoker controls	6p21.32	NR	rs9275532-?	NR	5E-6	(adjusted for HLA shared epitope)	1.754386	[1.23-3.12]	Illumina [133648] (imputed)	N
616	chr6_cox_hap2	4121890	4121891	rs3129721	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	IgA nephropathy	1,180 East Asian ancestry cases, 899 East Asian ancestry controls	NA			rs3129721-A	NR	6E-10		0.530478	[0.36-0.7] unit increase	Illumina [NR] (imputed)	N
616	chr6_cox_hap2	4121890	4121891	rs3129721	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA		NR	rs3129721-?	NR	7E-7		0.0367	[0.022-0.051] unit decrease	Illumina [at least 560000] (imputed)	N
616	chr6_cox_hap2	4123051	4123052	rs17615220	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	6p21.32	MTCO3P1	rs17615220-G	0.055013	3E-10		0.035653602	[0.025-0.047] unit decrease	Affymetrix [93095623] (imputed)	N
616	chr6_cox_hap2	4123460	4123461	rs4947344	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	MTCO3P1	rs4947344-T	NR	6E-9		0.0183059	[0.012-0.024] unit decrease	Affymetrix [319769] (imputed)	N
616	chr6_cox_hap2	4123460	4123461	rs4947344	31375628	Tengvall K	2019-08-02	Proc Natl Acad Sci U S A	Molecular mimicry between Anoctamin 2 and Epstein-Barr virus nuclear antigen 1 associates with multiple sclerosis risk.	Anti-anoctamin 2 antibody levels	11,936 European ancestry individuals	NA	6p21.32	NR	rs4947344-A	NR	1E-9		0.056	[0.032-0.080] unit increase	Illumina [615763]	N
616	chr6_cox_hap2	4123460	4123461	rs4947344	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p21.32	NR	rs4947344-?	NR	1E-24		0.2606	[0.21-0.31] unit decrease	Illumina [at least 560000] (imputed)	N
616	chr6_cox_hap2	4123526	4123527	rs9275563	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	MTCO3P1	rs9275563-T	NR	4E-11		0.0202974	[0.014-0.026] unit decrease	Affymetrix [323123] (imputed)	N
616	chr6_cox_hap2	4123526	4123527	rs9275563	23472185	Mero IL	2013-03-05	PLoS One	Oligoclonal band status in Scandinavian multiple sclerosis patients is associated with specific genetic risk alleles.	Multiple sclerosis (OCB status)	1,367 European ancestry OCB positive cases, 161 European ancestry OCB negative cases, 428 European ancestry controls	NA	6p21.32	HLA-DQA2	rs9275563-?	NR	6E-11	(OCB positive vs. controls)	1.75	[1.47-2.04]	Illumina [495970]	N
616	chr6_cox_hap2	4123796	4123797	rs6932517	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs6932517-C	0.48	2E-8		0.19	[0.14-0.27]	Illumina [NR] (imputed)	N
616	chr6_cox_hap2	4123813	4123814	rs9275570	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma and/or BMI	28,862 European ancestry cases, 422,048 European ancestry controls, 6,912 European ancestry individuals	NA	6p21.32	NR	rs9275570-G	NR	2E-19				Affymetrix [~ 8270000] (imputed)	N
616	chr6_cox_hap2	4123813	4123814	rs9275570	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	6p21.32	NR	rs9275570-?	NR	3E-18				Affymetrix [~ 8270000] (imputed)	N
616	chr6_cox_hap2	4124038	4124039	rs2894281	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	6p21.32	MTCO3P1	rs2894281-A	0.50383	7E-14		0.018175296	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
616	chr6_cox_hap2	4124211	4124212	rs4273729	23420232	Duggal P	2013-02-19	Ann Intern Med	Genome-wide association study of spontaneous resolution of hepatitis C virus infection: data from multiple cohorts.	Chronic hepatitis C infection	1,482 chronic HCV cases, 919 spontaneously cleared HCV cases	461 chronic HCV cases, 284 spontaneously cleared HCV cases	6p21.32	HLA	rs4273729-?	NR	5E-17		1.59		Illumina [792721] (imputed)	N
616	chr6_cox_hap2	4124613	4124614	rs9275572	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs9275572-A	0.48	8E-9		0.17	[0.12-0.24]	Illumina [NR] (imputed)	N
616	chr6_cox_hap2	4124613	4124614	rs9275572	24871463	Armstrong DL	2014-05-29	Genes Immun	GWAS identifies novel SLE susceptibility genes and explains the association of the HLA region.	Systemic lupus erythematosus	725 European ancestry cases, 2,438 European ancestry controls	NA	6p21.32	HLA-DQA2	rs9275572-A	0.4	5E-16		1.74	[1.64-1.85]	Illumina [NR]	N
616	chr6_cox_hap2	4124613	4124614	rs9275572	24376798	Miki D	2013-12-20	PLoS One	HLA-DQB1*03 confers susceptibility to chronic hepatitis C in Japanese: a genome-wide association study.	Chronic hepatitis C infection	481 Japanese ancestry cases, 2,963 Japanese ancestry controls	5,737 Japanese ancestry cases, 26,931 Japanese ancestry controls	6p21.32	HLA-DQB1, HLA-DQA1	rs9275572-T	0.359	4E-16		1.27	[1.19-1.33]	Illumina [458207]	N
616	chr6_cox_hap2	4124613	4124614	rs9275572	21499248	Kumar V	2011-04-17	Nat Genet	Genome-wide association study identifies a susceptibility locus for HCV-induced hepatocellular carcinoma.	Hepatocellular carcinoma	721 Japanese ancestry cases, 2,890 Japanese ancestry controls	673 Japanese ancestry cases, 2,596 Japanese ancestry controls	6p21.32	HLA-DQ, HLA-DR	rs9275572-A	0.36	6E-9		1.3	[1.19-1.42]	Illumina [432703]	N
616	chr6_cox_hap2	4124613	4124614	rs9275572	20596022	Petukhova L	2010-07-01	Nature	Genome-wide association study in alopecia areata implicates both innate and adaptive immunity.	Alopecia areata	Up to 1,054 European ancestry cases, 3,278 European ancestry controls	NA	6p21.32	HLA-DQA2	rs9275572-G	0.59	1E-35		2.21	[1.98-2.47]	Illumina [463301]	N
616	chr6_cox_hap2	4124940	4124941	rs9275576	31837886	Kennedy OJ	2019-12-02	Am J Kidney Dis	Coffee Consumption and Kidney Function: A Mendelian Randomization Study.	Coffee consumption (cups per day)	227,666 British ancestry individuals	NA	6p21.32	HLA-DQA2	rs9275576-T	0.146	6E-9		0.048	NR cups per day increase	NR [NR]	N
616	chr6_cox_hap2	4124998	4124999	rs9275578	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs9275578-T	0.31	1E-9		4.62	[3.51-6.10]	Illumina [NR] (imputed)	N
616	chr6_cox_hap2	4125073	4125074	rs9275579	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	MTCO3P1	rs9275579-A	NR	2E-11		0.0245816	[0.017-0.032] unit decrease	Affymetrix [323123] (imputed)	N
616	chr6_cox_hap2	4125076	4125077	rs9275580	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs9275580-G	0.33	3E-8		3.96	[3.03-5.19]	Illumina [NR] (imputed)	N
616	chr6_cox_hap2	4125684	4125685	rs9275582	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs9275582-T	0.31	1E-9		4.54	[3.45-5.98]	Illumina [NR] (imputed)	N
616	chr6_cox_hap2	4125684	4125685	rs9275582	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (non-Lofgren's syndrome without extrapulmonary manifestations)	451 Swedish ancestry cases, 2,086 Swedish ancestry controls	NA	6p21.32	HLA-DQB1, HLA-DQA2, HLA-DQA1	rs9275582-G	0.83	2E-11		1.8705574	[1.57-2.24]	Illumina [118177]	N
616	chr6_cox_hap2	4125736	4125737	rs3135461	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs3135461-A	0.841	2E-39		0.726	[0.68-0.77]	Illumina [11270530] (imputed)	N
616	chr6_cox_hap2	4125736	4125737	rs3135461	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.32		rs3135461-A	0.773542	8E-36		1.0648913	[1.05-1.08]	Affymetrix, Illumina [9851866] (imputed)	N
616	chr6_cox_hap2	4125993	4125994	rs9275587	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	XXbac-BPG254F23.7	rs9275587-C	NR	5E-9		0.0184889	[0.012-0.025] unit increase	Affymetrix [323858] (imputed)	N
616	chr6_cox_hap2	4125993	4125994	rs9275587	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	XXbac-BPG254F23.7	rs9275587-C	NR	2E-8		0.0178049	[0.012-0.024] unit increase	Affymetrix [127266] (imputed)	N
616	chr6_cox_hap2	4126190	4126191	rs7764819	23284291	Hancock DB	2012-12-20	PLoS Genet	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (smoking interaction)	50,047 European ancestry individuals	NA	6p21.32	HLA-DQA2, HLA-DQB1	rs7764819-T	0.89	4E-9	(FEV1/FVC, Pack-years)	1.0E-4	[-0.00014-0.00025] unit decrease	NR [~ 2500000] (imputed)	N
616	chr6_cox_hap2	4126190	4126191	rs7764819	23284291	Hancock DB	2012-12-20	PLoS Genet	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (smoking interaction)	50,047 European ancestry individuals	NA	6p21.32	HLA-DQA2, HLA-DQB1	rs7764819-T	0.89	4E-9	(FEV1/FVC, Ever-smoking)	0.001	[-0.04016-0.04216] unit decrease	NR [~ 2500000] (imputed)	N
616	chr6_cox_hap2	4126234	4126235	rs9275592	28041642	Carmona FD	2016-12-29	Am J Hum Genet	A Genome-wide Association Study Identifies Risk Alleles in Plasminogen and P4HA2 Associated with Giant Cell Arteritis.	Giant cell arteritis	2,134 European ancestry cases, 9,125 European ancestry controls	NA	6p21.32	HLA-DQA1, HLA-DQA2	rs9275592-?	0.11	1E-40		2.08	[1.87-2.32]	Illumina [1844133] (imputed)	N
616	chr6_cox_hap2	4126542	4126543	rs7765379	25383971	Dunstan SJ	2014-11-10	Nat Genet	Variation at HLA-DRB1 is associated with resistance to enteric fever.	Enteric fever	432 Vietnamese ancestry cases, 2,011 Vietnamese ancestry controls	151 Vietnamese ancestry cases,  668 Vietnamese ancestry controls, 595 Nepalese ancestry cases, 386 Nepalese ancestry controls	6p21.32	HLA-DRB1, HLA-DQB1	rs7765379-A	0.945	2E-13		4.55	[2.94-6.67]	Illumina [709725]	N
616	chr6_cox_hap2	4126542	4126543	rs7765379	23266558	Yamazaki K	2012-12-21	Gastroenterology	A genome-wide association study identifies 2 susceptibility Loci for Crohn's disease in a Japanese population.	Crohn's disease	372 Japanese ancestry cases,3,389 Japanese ancestry controls	Up to 1,151 Japanese ancestry cases, up to 15,800 Japanese ancestry controls	6p21.32	HLA-DQA2, HLA-DOB, HLA-DQB1, PSMB9, HLA-DRB1, HLA-DQA1	rs7765379-G	NR	9E-59		1.93	[1.78-2.09]	Illumina [4929034] (imputed)	N
616	chr6_cox_hap2	4126542	4126543	rs7765379	21452313	Freudenberg J	2011-04-01	Arthritis Rheum	Genome-wide association study of rheumatoid arthritis in Koreans: population-specific loci as well as overlap with European susceptibility loci.	Rheumatoid arthritis	801 Korean ancestry cases, 757 Korean ancestry controls	718 Korean ancestry cases, 719 Korean ancestry controls	6p21.32	HLA-DRB1	rs7765379-?		5E-23		2.51	[NR]	Illumina [441398]	N
616	chr6_cox_hap2	4126775	4126776	rs2858332	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	XXbac-BPG254F23.7	rs2858332-T	NR	7E-18		0.0263625	[0.02-0.032] unit decrease	Affymetrix [323123] (imputed)	N
616	chr6_cox_hap2	4126775	4126776	rs2858332	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	6p21.32	HLA-DQA2	rs2858332-T	0.50665382076412	7E-7	(G_Clostridium_sensu_stricto_RNT)	0.129415	[0.078-0.181] unit decrease	Illumina [7711310] (imputed)	N
616	chr6_cox_hap2	4126891	4126892	rs2858331	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs2858331-G	0.33	4E-8		3.82	[2.93-4.97]	Illumina [NR] (imputed)	N
616	chr6_cox_hap2	4126891	4126892	rs2858331	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Non-Hodgkin's lymphoma	2,400 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs2858331-G	NR	3E-7		1.1625204	NR	Affymetrix [7846216] (imputed)	N
616	chr6_cox_hap2	4126891	4126892	rs2858331	23146381	Levin AM	2012-11-10	J Allergy Clin Immunol	A meta-analysis of genome-wide association studies for serum total IgE in diverse study populations.	IgE levels	2,469 African American individuals, 259 Latino individuals, 1,564 European ancestry individuals	2,961 African American individuals, 1,477 Latino individuals, 649 European ancestry individuals, 680 Hutterite individuals	6p21.32	HLA-DQA2	rs2858331-G	NR	6E-6				Affymetrix, Illumina [NR] (imputed)	N
616	chr6_cox_hap2	4126891	4126892	rs2858331	22075330	Granada M	2011-11-08	J Allergy Clin Immunol	A genome-wide association study of plasma total IgE concentrations in the Framingham Heart Study.	IgE levels	6,819 European ancestry individuals	7,809 European ancestry indivduals	6p21.32	HLA-DQA2	rs2858331-G	NR	1E-8		0.04	[NR] unit decrease	Affymetrix [2540223] (imputed)	N
616	chr6_cox_hap2	4126969	4126970	rs9275595	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	6p21.32	HLA-DQA2	rs9275595-T	0.763	6E-6		0.016	[0.0089-0.0227] kg/m2 increase	Affymetrix, Illumina [2550021]	N
616	chr6_cox_hap2	4126969	4126970	rs9275595	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	6p21.32	HLA-DQA2	rs9275595-T	0.76	9E-6	(EA)	0.016	[0.009-0.0232] kg/m2 increase	Affymetrix, Illumina [2550021]	N
616	chr6_cox_hap2	4127097	4127098	rs7454108	29857070	Gao J	2018-05-29	J Invest Dermatol	Association study and fine-mapping major histocompatibility complex analysis of pemphigus vulgaris in a Han Chinese population.	Pemphigus vulgaris	240 Han Chinese ancestry cases, 1,031 Han Chinese ancestry controls	252 Han Chinese ancestry cases, 1,852 Han Chinese ancestry controls	6p21.32	NR	rs7454108-?	NR	3E-12	(conditioned on HLA-DRB1*14:04)	3.25	[NR]	Illumina [802980]	N
616	chr6_cox_hap2	4127097	4127098	rs7454108	28029757	Merkel PA	2016-12-28	Arthritis Rheumatol	Identification of Functional and Expression Polymorphisms Associated With Risk for Antineutrophil Cytoplasmic Autoantibody-Associated Vasculitis.	Vasculitis associated with antineutrophil cytoplasmic antibody reactive to myeloperoxidase	324 European ancestry cases and 3258 European ancestry controls.	54 European ancestry cases and 1465 European ancestry controls.	6p21.32	HLA-DQA2	rs7454108-C	0.10	5E-25		2.73	2.25-3.24	Affymetrix [at least 333035] (imputed)	N
616	chr6_cox_hap2	4127097	4127098	rs7454108	26272072	Jiang X	2015-08-13	Rheumatology (Oxford)	An Immunochip-based interaction study of contrasting interaction effects with smoking in ACPA-positive versus ACPA-negative rheumatoid arthritis.	ACPA-positive rheumatoid arthritis (smoking interaction)	340 European ancestry never-smoker cases, 493 European ancestry ever-smoker cases, 746 European ancestry never-smoker controls, 994 European ancestry ever-smoker controls	187 European ancestry never-smoker cases, 421 European ancestry ever-smoker cases, 461 European ancestry never-smoker controls, 447 European ancestry ever-smoker controls	6p21.32	NR	rs7454108-?	NR	2E-6	(adjusted for HLA shared epitope)	1.724138	[1.22-2.94]	Illumina [133648] (imputed)	N
616	chr6_cox_hap2	4127144	4127145	rs3957146	26272072	Jiang X	2015-08-13	Rheumatology (Oxford)	An Immunochip-based interaction study of contrasting interaction effects with smoking in ACPA-positive versus ACPA-negative rheumatoid arthritis.	ACPA-positive rheumatoid arthritis (smoking interaction)	340 European ancestry never-smoker cases, 493 European ancestry ever-smoker cases, 746 European ancestry never-smoker controls, 994 European ancestry ever-smoker controls	187 European ancestry never-smoker cases, 421 European ancestry ever-smoker cases, 461 European ancestry never-smoker controls, 447 European ancestry ever-smoker controls	6p21.32	NR	rs3957146-?	NR	1E-6	(adjusted for HLA shared epitope)	1.724138	[1.22-2.86]	Illumina [133648] (imputed)	N
616	chr6_cox_hap2	4127245	4127246	rs9275596	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	IgA nephropathy	1,180 East Asian ancestry cases, 899 East Asian ancestry controls	NA	6p21.32	NR	rs9275596-T	NR	6E-10				Illumina [NR] (imputed)	N
616	chr6_cox_hap2	4127245	4127246	rs9275596	32912934	Li M	2020-09-10	J Am Soc Nephrol	Genome-Wide Meta-Analysis Identifies Three Novel Susceptibility Loci and Reveals Ethnic Heterogeneity of Genetic Susceptibility for IgA Nephropathy.	IgA nephropathy	2,628 Chinese ancestry cases, 11,563 Chinese ancestry controls	6,879 Han Chinese ancestry cases, 9,019 Han Chinese ancestry controls, 1,039 Italian ancestry cases, 1,289 Italian ancestry controls	6p21.32	DQB1.DRB1	rs9275596-T	0.8466025166479287	2E-13	(East Asian)	1.4409347	[1.3070519220741-1.58853123859263]	NR [3611808] (imputed)	N
616	chr6_cox_hap2	4127245	4127246	rs9275596	25710614	Hong X	2015-02-24	Nat Commun	Genome-wide association study identifies peanut allergy-specific loci and evidence of epigenetic mediation in US children.	Peanut allergy	316 European ancestry child cases, 144 European ancestry non-allergic non-sensitized normal child controls, 589 European ancestry uncertain phenotype child controls, 1,148 European ancestry uncertain phenotype adult controls	62 European ancestry child cases, 69 European ancestry child controls, 24 child cases, 58 child controls	6p21.32	HLA-DRB1, HLA-DQA1, HLA-DQB1, HLA-DQA2	rs9275596-C	0.35	6E-11	(EA)	1.7	[1.40-2.10]	Illumina [6459842] (imputed)	N
616	chr6_cox_hap2	4127245	4127246	rs9275596	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	6p21.32	HLA-DQB1, HLA-DQA1, HLA-DRB1	rs9275596-T	0.8	1E-19	(East Asian)	1.69	[NR]	Illumina [> 1000000] (imputed)	N
616	chr6_cox_hap2	4127245	4127246	rs9275596	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	6p21.32	HLA-DQB1, HLA-DQA1, HLA-DRB1	rs9275596-T	0.65	3E-31		1.44	[NR]	Illumina [> 1000000] (imputed)	N
616	chr6_cox_hap2	4127245	4127246	rs9275596	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	6p21.32	HLA-DQB1, HLA-DQA1, HLA-DRB1	rs9275596-T	0.65	2E-15	(EA)	1.35		Illumina [> 1000000] (imputed)	N
616	chr6_cox_hap2	4127245	4127246	rs9275596	21399633	Gharavi AG	2011-03-13	Nat Genet	Genome-wide association study identifies susceptibility loci for IgA nephropathy.	Nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls	712 Han Chinese ancestry cases, 748 Han Chinese ancestry controls, 1,238 European ancestry cases, 1,172 European ancestry controls	6p21.32	HLA-DQB1, HLA-DRB1, HLA-DQA1	rs9275596-?	0.73 (EA)	2E-26		1.59	[NR]	Illumina [498322]	N
616	chr6_cox_hap2	4127283	4127284	rs6935723	25217962	Heap GA	2014-09-14	Nat Genet	HLA-DQA1-HLA-DRB1 variants confer susceptibility to pancreatitis induced by thiopurine immunosuppressants.	Response to thiopurine immunosuppressants in inflammatory bowel disease (pancreatitis) (azathioprine and mercaptopurine)	172 European ancestry cases, 2,035 European ancestry controls	78 European ancestry cases, 472 controls	6p21.32	HLA region	rs6935723-C	0.27	1E-21		2.46	[2.04-2.98]	Affymetrix, Illumina [2819700] (imputed)	N
616	chr6_cox_hap2	4127290	4127291	rs3104402	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	XXbac-BPG254F23.7	rs3104402-T	NR	3E-10		0.035252	[0.024-0.046] unit increase	Affymetrix [323123] (imputed)	N
616	chr6_cox_hap2	4127290	4127291	rs3104402	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	6p21.32	NR	rs3104402-?	NR	1E-8		0.1164	[0.076-0.157] unit decrease	Illumina [at least 560000] (imputed)	N
616	chr6_cox_hap2	4127290	4127291	rs3104402	22658931	Pajewski NM	2012-05-30	Vaccine	A genome-wide association study of host genetic determinants of the antibody response to Anthrax Vaccine Adsorbed.	Immune response to anthrax vaccine	726 European ancestry individuals	NA	6p21.32	HLA-DRB1, HLA-DQA1	rs3104402-A	NR	6E-6		0.165	[0.094-0.236] unit decrease	Affymetrix [736996]	N
616	chr6_cox_hap2	4127606	4127607	rs3998158	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs3998158-C	0.3	4E-9		4.39	[3.33-5.79]	Illumina [NR] (imputed)	N
616	chr6_cox_hap2	4127633	4127634	rs3998159	26272072	Jiang X	2015-08-13	Rheumatology (Oxford)	An Immunochip-based interaction study of contrasting interaction effects with smoking in ACPA-positive versus ACPA-negative rheumatoid arthritis.	ACPA-positive rheumatoid arthritis (smoking interaction)	340 European ancestry never-smoker cases, 493 European ancestry ever-smoker cases, 746 European ancestry never-smoker controls, 994 European ancestry ever-smoker controls	187 European ancestry never-smoker cases, 421 European ancestry ever-smoker cases, 461 European ancestry never-smoker controls, 447 European ancestry ever-smoker controls	6p21.32	NR	rs3998159-?	NR	2E-6	(adjusted for HLA shared epitope)	1.724138	[1.22-2.94]	Illumina [133648] (imputed)	N
616	chr6_cox_hap2	4127749	4127750	rs3957147	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	XXbac-BPG254F23.7	rs3957147-T	NR	5E-9		0.0232882	[0.015-0.031] unit increase	Affymetrix [323123] (imputed)	N
616	chr6_cox_hap2	4127749	4127750	rs3957147	32534018	Liu X	2020-06-10	Brain Behav Immun	Genetic factors underlying the bidirectional relationship between autoimmune and mental disorders - findings from a Danish population-based study.	Autoimmune traits	1,383 Danish ancestry cases, 62,656 Danish ancestry controls	NA	6p21.32	NR	rs3957147-T	0.21	9E-9		1.34	[1.21-1.48]	NR [7721839] (imputed)	N
616	chr6_cox_hap2	4127788	4127789	rs3104404	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	150,545 East Asian ancestry individuals	NA	6p21.32		rs3104404-A	0.356773	3E-10		0.0227	[0.016-0.03] unit decrease	Illumina [13478866] (imputed)	N
616	chr6_cox_hap2	4127813	4127814	rs35122968	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p21.32	HLA-DQA2	rs35122968-C	0.043	4E-11		0.2	[0.14-0.26] unit increase	Affymetrix, Illumina [7374092] (imputed)	N
616	chr6_cox_hap2	4127821	4127822	rs3129731	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	6p21.32		rs3129731-G	0.795841844	3E-12		0.07240271	[0.052-0.093] unit decrease	Illumina [13134967] (imputed)	N
616	chr6_cox_hap2	4127842	4127843	rs2894381	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	6p21.32		rs2894381-A	0.422035	4E-8		0.0201838	[0.013-0.027] unit increase	Illumina [13476266] (imputed)	N
616	chr6_cox_hap2	4127842	4127843	rs2894381	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	121,047 East Asian ancestry individuals	NA	6p21.32	NR	rs2894381-G	0.566792	3E-10		0.026702	[0.018-0.035] SD units decrease	Affymetrix, Illumina [16286195] (imputed)	N
616	chr6_cox_hap2	4127842	4127843	rs2894381	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p21.32		rs2894381-?	NR	6E-9		0.0142926	[0.0092-0.0194] unit decrease	Affymetrix [20259828] (imputed)	N
616	chr6_cox_hap2	4128008	4128009	rs3997848	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.32		rs3997848-T	0.676	4E-17				Affymetrix [10369434] (imputed)	N
616	chr6_cox_hap2	4128008	4128009	rs3997848	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	XXbac-BPG254F23.7	rs3997848-G	NR	2E-8		0.0168279	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
616	chr6_cox_hap2	4128008	4128009	rs3997848	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	XXbac-BPG254F23.7	rs3997848-G	NR	1E-8		0.0171568	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
616	chr6_cox_hap2	4128008	4128009	rs3997848	33545615	Hsu LA	2021-01-19	Atherosclerosis	Circulating chemerin levels are determined through circulating platelet counts in nondiabetic Taiwanese people: A bidirectional Mendelian randomization study.	Chemerin levels	3,887 Han Chinese ancestry individuals	NA	6p21.32	HLA	rs3997848-?	NR	5E-8		0.017	[0.012-0.022] unit increase (adjusted)	Affymetrix [610203]	N
616	chr6_cox_hap2	4128008	4128009	rs3997848	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p21.32	HLA-DQA2	rs3997848-G	0.117	2E-14		0.135	[0.1-0.17] unit increase	Affymetrix, Illumina [7374092] (imputed)	N
616	chr6_cox_hap2	4128016	4128017	rs3997849	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p21.32	NR	rs3997849-T	0.262	3E-6	(IFNAR2_of_CD8p_T)			Illumina [5084123] (imputed)	N
616	chr6_cox_hap2	4128043	4128044	rs9275599	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs9275599-T	0.032	2E-16	(conditional)	1.585	[1.48-1.69]	Illumina [11270530] (imputed)	N
616	chr6_cox_hap2	4128201	4128202	rs113721192	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.32	Intergenic	rs113721192-?		1E-6		1.06	[1.03-1.08]	Illumina [7645193] (imputed)	N
616	chr6_cox_hap2	4128201	4128202	rs113721192	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.32	Intergenic	rs113721192-?		3E-7		1.76	[1.42-2.18]	Illumina [7645193] (imputed)	N
616	chr6_cox_hap2	4128275	4128276	rs9275601	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.32		rs9275601-C	0.559	2E-19				Affymetrix [10369434] (imputed)	N
616	chr6_cox_hap2	4128275	4128276	rs9275601	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.32		rs9275601-C	0.559	1E-20				Affymetrix [10369434] (imputed)	N
616	chr6_cox_hap2	4128423	4128424	rs9275602	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	XXbac-BPG254F23.7	rs9275602-A	NR	1E-8		0.0219542	[0.014-0.029] unit increase	Affymetrix [323123] (imputed)	N
616	chr6_cox_hap2	4128423	4128424	rs9275602	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs9275602-?	NR	8E-10				Affymetrix [~ 8270000] (imputed)	N
616	chr6_cox_hap2	4128423	4128424	rs9275602	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	6p21.32	NR	rs9275602-?	NR	5E-29	(conditional)			Affymetrix [15688218] (imputed)	N
616	chr6_cox_hap2	4129172	4129173	rs200025476	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.32	NR	rs200025476-T	0.011	3E-9		0.507765	[0.34-0.67] unit increase	Affymetrix [up to 8900000] (imputed)	N
616	chr6_cox_hap2	4129172	4129173	rs200025476	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.32	NR	rs200025476-T	0.011	2E-6	(women)	0.688868	[0.41-0.97] unit increase	Affymetrix [up to 8900000] (imputed)	N
616	chr6_cox_hap2	4129288	4129289	rs9391746	33961016	Moksnes MR	2021-05-07	Hum Mol Genet	Genome-wide association study of cardiac troponin I in the general population.	High-sensitivity cardiac troponin I concentration	48,115 European ancestry individuals	NA	6p21.32		rs9391746-T	0.0718	1E-8		0.08	[0.06-0.1] unit increase	Illumina [26711992] (imputed)	N
616	chr6_cox_hap2	4129952	4129953	rs5024431	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6p21.32		rs5024431-?	NR	6E-17		0.897905	[0.87-0.92]	NR [685523]	N
616	chr6_cox_hap2	4130122	4130123	rs6457637	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on plasmacytoid Dendritic Cell	2,872 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs6457637-G	0.07647	9E-15		0.4484	[0.34-0.56] unit decrease	Illumina [17926607] (imputed)	N
616	chr6_cox_hap2	4130543	4130544	rs9275642	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Skin cancer	25,928 European ancestry cases, 466,275 European ancestry controls, 154 East Asian ancestry cases, 178,572 East Asian ancestry controls	NA	6p21.32		rs9275642-T	NR	4E-21		0.1097	[0.087-0.132] unit decrease	Affymetrix, Illumina [25845421] (imputed)	N
616	chr6_cox_hap2	4130543	4130544	rs9275642	27539887	Chahal HS	2016-08-19	Nat Commun	Genome-wide association study identifies 14 novel risk alleles associated with basal cell carcinoma.	Basal cell carcinoma	12.945 European ancestry cases, 274,252 European ancestry controls	4,242 European ancestry cases, 12,802 European ancestry controls	6p21.32	HLA-DQA2	rs9275642-C	0.79	2E-12		1.1235955	[NR]	Illumina [at least 560000] (imputed)	N
616	chr6_cox_hap2	4130806	4130807	rs41288885	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.32	XXbac-BPG254F23.7	rs41288885-G	0.058676	5E-9		0.028841805	[0.019-0.039] unit increase	Affymetrix [93095623] (imputed)	N
616	chr6_cox_hap2	4130806	4130807	rs41288885	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.32	NR	rs41288885-?	NR	9E-10				Affymetrix [~ 8270000] (imputed)	N
616	chr6_cox_hap2	4130988	4130989	rs3998154	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.32		rs3998154-G	0.585	9E-27				Affymetrix [10369434] (imputed)	N
616	chr6_cox_hap2	4130988	4130989	rs3998154	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p21.32		rs3998154-G	0.585	1E-22				Affymetrix [10369434] (imputed)	N
616	chr6_cox_hap2	4131158	4131159	rs3916765	34716350	Lin WY	2021-10-29	Nat Commun	Genome-wide association study identifies susceptibility loci for acute myeloid leukemia.	Acute myeloid leukemia (normal cytogenetics)	3,041 European ancestry cases, 6,760 European ancestry controls	977 European ancestry cases, 3,728 European ancestry controls	6p21.32		rs3916765-G	NR	2E-10		1.72	[1.46-2.03]	Affymetrix, Illumina [6496414] (imputed)	N
616	chr6_cox_hap2	4131158	4131159	rs3916765	22693455	Perry JR	2012-05-31	PLoS Genet	Stratifying type 2 diabetes cases by BMI identifies genetic risk variants in LAMA1 and enrichment for risk variants in lean compared to obese cases.	Type 2 diabetes	2,112 lean type 2 diabetes cases, 4,123 obese type 2 diabetes cases, 54,412 controls	2,881 lean type 2 diabetes cases, 8,702 obese type 2 diabetes cases, 18,957 controls	6p21.32	HLA-DQA2	rs3916765-A	0.12	1E-6	(Lean)	1.21	[1.12-1.31]	NR [NR]	N
616	chr6_cox_hap2	4132237	4132238	rs9275667	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	XXbac-BPG254F23.7	rs9275667-T	NR	1E-15		0.0312755	[0.024-0.039] unit decrease	Affymetrix [323858] (imputed)	N
616	chr6_cox_hap2	4132237	4132238	rs9275667	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	XXbac-BPG254F23.7	rs9275667-T	NR	6E-15		0.0304364	[0.023-0.038] unit decrease	Affymetrix [127266] (imputed)	N
616	chr6_cox_hap2	4133556	4133557	rs9275698	21804548	Hirota T	2011-07-31	Nat Genet	Genome-wide association study identifies three new susceptibility loci for adult asthma in the Japanese population.	Asthma	1,532 Japanese ancestry cases, 3,304 Japanese ancestry controls	5,639 Japanese ancestry cases, 24,608 Japanese ancestry controls	6p21.32	HLA-DQA2	rs9275698-T	0.79	5E-12		1.18	[1.12-1.24]	Illumina [458847]	N
616	chr6_cox_hap2	4133803	4133804	rs9275710	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	XXbac-BPG254F23.7	rs9275710-T	NR	1E-9		0.0190333	[0.013-0.025] unit decrease	Affymetrix [323858] (imputed)	N
616	chr6_cox_hap2	4133803	4133804	rs9275710	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	XXbac-BPG254F23.7	rs9275710-T	NR	9E-9		0.018054	[0.012-0.024] unit decrease	Affymetrix [127266] (imputed)	N
616	chr6_cox_hap2	4135488	4135489	rs117522574	32771030	Tangtanatakul P	2020-08-08	Arthritis Res Ther	Meta-analysis of genome-wide association study identifies FBN2 as a novel locus associated with systemic lupus erythematosus in Thai population.	Systemic lupus erythematosus	487 Thai cases, 1,606 Thai controls	405 Thai cases, 1,590 Thai controls	6p21.32	XXbac-BPG254F23.7, HLA-DQB3	rs117522574-G	0.19	3E-8		1.5082	[NR]	Illumina [421909] (imputed)	N
616	chr6_cox_hap2	4136635	4136636	rs9275844	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	XXbac-BPG254F23.7	rs9275844-T	NR	2E-8		0.0217782	[0.014-0.029] unit increase	Affymetrix [323123] (imputed)	N
616	chr6_cox_hap2	4138859	4138860	rs2858892	30657218	Park SY	2019-01-18	Clin Exp Allergy	Longitudinal analysis to better characterize Asthma-COPD Overlap Syndrome (ACOS): Findings from an adult asthma cohort in Korea (COREA).	Adult asthma	731 Korean ancestry cases, 5,915 Korean ancestry controls	NA	6p21.32	NR	rs2858892-?	NR	4E-7		1.34		NR [267429]	N
616	chr6_cox_hap2	4139608	4139609	rs114803904	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs114803904-C	0.474	1E-24	(cAMP-specific 3',5'-cyclic phosphodiesterase 4D, PDE4D.5255.22.3)	0.29	[0.23-0.35] unit increase	Affymetrix [10572788] (imputed)	N
616	chr6_cox_hap2	4140670	4140671	rs73732611	33558538	Gebresilase T	2021-02-08	Sci Rep	Replication of HLA class II locus association with susceptibility to podoconiosis in three Ethiopian ethnic groups.	Podoconiosis	1,137 Ethiopian ancestry cases, 1,152 Ethiopian ancestry controls	NA	6p21.32	HLA-DQB3	rs73732611-C	0.07	5E-9				Illumina [2201695]	N
616	chr6_cox_hap2	4143379	4143380	rs2859113	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	NR	rs2859113-C	0.378328302013423	6E-8	(IGP59)	0.1817	[0.12-0.25] unit decrease	Illumina [~ 2500000] (imputed)	N
616	chr6_cox_hap2	4145666	4145667	rs2858884	20711174	Hor H	2010-08-15	Nat Genet	Genome-wide association study identifies new HLA class II haplotypes strongly protective against narcolepsy.	Narcolepsy	562 European ancestry cases, 702 European ancestry controls	370 cases, 495 controls	6p21.32	HLA-DQA2	rs2858884-A	0.81	3E-8		1.79	[1.45-2.17]	Affymetrix [392949]	N
616	chr6_cox_hap2	4146805	4146806	rs9276244	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	IgA levels	16,883 Icelandic ancestry individuals	2,151 Swedish ancestry individuals	6p21.32	HLA-DQA2	rs9276244-G	0.328	3E-14		0.09	NR SD units increase	Illumina [21568490] (imputed)	N
616	chr6_cox_hap2	4147559	4147560	rs9276263	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p21.32	NR	rs9276263-?	NR	7E-16		0.1146	[0.087-0.142] unit increase	Illumina [at least 560000] (imputed)	N
616	chr6_cox_hap2	4152872	4152873	rs9276370	32004448	Savage SA	2020-01-30	Am J Hum Genet	Genome-wide Association Study Identifies HLA-DPB1 as a Significant Risk Factor for Severe Aplastic Anemia.	Severe aplastic anemia	359 European ancestry cases, 1,396 European ancestry controls	175 European ancestry cases, 1,059 European ancestry controls	6p21.32	HLA-DQA2, HLA-DQB2	rs9276370-?	NR	5E-7		1.41	[1.23-1.62]	Illumina [688067]	N
616	chr6_cox_hap2	4152872	4152873	rs9276370	24940741	Chang SW	2014-06-18	PLoS One	A genome-wide association study on chronic HBV infection and its clinical progression in male Han-Taiwanese.	Chronic hepatitis B infection	321 Chinese ancestry cases, 304 Chinese ancestry controls	1,302 Chinese ancestry cases, 761 Chinese ancestry controls	6p21.32	HLA-DQA2	rs9276370-T	0.076	2E-12		1.95	[1.62-2.34]	Illumina [456262]	N
616	chr6_cox_hap2	4154267	4154267	rs11426605	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs11426605-T	0.966	3E-15	(conditional)	0.648	[0.54-0.76]	Illumina [11270530] (imputed)	N
616	chr6_cox_hap2	4156121	4156122	rs9461806	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.32		rs9461806-C	0.595	2E-17				Affymetrix [10369434] (imputed)	N
616	chr6_cox_hap2	4156121	4156122	rs9461806	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.32		rs9461806-C	0.595	1E-25				Affymetrix [10369434] (imputed)	N
616	chr6_cox_hap2	4156307	4156308	rs115018313	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	6p21.32		rs115018313-C	NR	7E-33		0.284	[0.24-0.33] unit increase	Affymetrix, Illumina [25845091] (imputed)	N
616	chr6_cox_hap2	4156755	4156756	rs9276423	26379185	Garcia-Etxebarria K	2015-09-17	PLoS One	No Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity.	Mild influenza (H1N1) infection	107 European ancestry mild cases, 549 European ancestry population controls	NA	6p21.32	HLA-DQA2	rs9276423-?	0.0	3E-8				Affymetrix [547296]	N
616	chr6_cox_hap2	4157757	4157758	rs9276427	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first birth	542,901 European ancestry individuals	NA	6p21.32	HLA-DQA2	rs9276427-T	0.5217	3E-8		0.0532	[0.034-0.072] unit increase	NR [9744772] (imputed)	N
616	chr6_cox_hap2	4157757	4157758	rs9276427	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQA2	rs9276427-C	NR	6E-9		0.0164173	[0.011-0.022] unit increase	Affymetrix [319769] (imputed)	N
616	chr6_cox_hap2	4157757	4157758	rs9276427	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DQA2	rs9276427-C	NR	1E-8		0.0160937	[0.011-0.022] unit increase	Affymetrix [319769] (imputed)	N
616	chr6_cox_hap2	4157757	4157758	rs9276427	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DQA2	rs9276427-C	NR	3E-8		0.0158296	[0.01-0.021] unit increase	Affymetrix [321169] (imputed)	N
616	chr6_cox_hap2	4157757	4157758	rs9276427	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.32		rs9276427-C	0.49390500000000004	2E-10		1.0275491	[1.02-1.03]	Affymetrix, Illumina [9851866] (imputed)	N
616	chr6_cox_hap2	4157909	4157910	rs41288889	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs41288889-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
616	chr6_cox_hap2	4158567	4158568	rs9276434	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	6p21.32	HLA-DQA2	rs9276434-T	NR	4E-17		0.0479129	[0.037-0.059] unit decrease	Illumina [13520550] (imputed)	N
616	chr6_cox_hap2	4159768	4159769	rs9276435	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cervical cancer	6,563 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs9276435-C	NR	2E-10		1.1631	NR	Affymetrix [7846216] (imputed)	N
616	chr6_cox_hap2	4167322	4167323	rs2077046	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQB2	rs2077046-C	NR	2E-8		0.0159433	[0.01-0.021] unit increase	Affymetrix [319769] (imputed)	N
616	chr6_cox_hap2	4171095	4171096	rs2301271	21408207	Chung SA	2011-03-03	PLoS Genet	Differential genetic associations for systemic lupus erythematosus based on anti-dsDNA autoantibody production.	Systemic lupus erythematosus	811 anti-dsDNA positive European ancestry cases, 906 anti-dsDNA negative European ancestry cases, 4,813 European ancestry controls	NA	6p21.32	HLA-DQA2	rs2301271-T	0.40	2E-12	(anti-dsDNA -)	1.47	[1.32-1.63]	Illumina [421318] (imputed)	N
616	chr6_cox_hap2	4172176	4172177	rs9276578	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p21.32	HLA-DQB2	rs9276578-G	NR	2E-9		0.0231702	[0.016-0.031] unit decrease	Affymetrix [323858] (imputed)	N
616	chr6_cox_hap2	4172705	4172706	rs1049110	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	HLA-DQA2, HLA-DQB2	rs1049110-C	0.346381764494382	2E-8	(IGP42)	0.1909	[0.12-0.26] unit increase	Illumina [~ 2500000] (imputed)	N
616	chr6_cox_hap2	4172705	4172706	rs1049110	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	HLA-DQA2, HLA-DQB2	rs1049110-C	0.34601888034188	4E-8	(IGP2)	0.1853	[0.12-0.25] unit increase	Illumina [~ 2500000] (imputed)	N
616	chr6_cox_hap2	4173111	4173112	rs9276580	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.32		rs9276580-T	0.46	8E-18				Affymetrix [10369434] (imputed)	N
616	chr6_cox_hap2	4173227	4173228	rs7753017	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs7753017-A	0.237	5E-43		0.745	[0.7-0.79]	Illumina [11270530] (imputed)	N
616	chr6_cox_hap2	4174544	4174545	rs2395258	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	6p21.32	HLA-DQB2	rs2395258-T	NR	6E-9		0.0205128	[0.014-0.027] unit increase	Illumina [13519193] (imputed)	N
616	chr6_cox_hap2	4174960	4174961	rs2006163	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.32		rs2006163-A	0.462	4E-35				Affymetrix [10369434] (imputed)	N
616	chr6_cox_hap2	4175636	4175637	rs2008560	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQB2	rs2008560-G	NR	3E-12		0.0196979	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
616	chr6_cox_hap2	4175636	4175637	rs2008560	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DQB2	rs2008560-G	NR	2E-11		0.0189439	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
616	chr6_cox_hap2	4175636	4175637	rs2008560	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DQB2	rs2008560-G	NR	1E-10		0.0183237	[0.013-0.024] unit increase	Affymetrix [321169] (imputed)	N
616	chr6_cox_hap2	4175636	4175637	rs2008560	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling worry	372,869 European ancestry individuals	NA	6p21.32	C4B	rs2008560-C	0.496591	3E-8		5.56	unit decrease	NR [10847151] (imputed)	N
616	chr6_cox_hap2	4175914	4175915	rs7453920	27244555	Li Y	2016-05-31	Nat Commun	Genome-wide association study identifies 8p21.3 associated with persistent hepatitis B virus infection among Chinese.	Persistent hepatitis B virus infection	1,251 Chinese ancestry persistently infected cases, 1,057 Chinese ancestry spontaneously recovered controls	3,905 Chinese ancestry persistently infected cases, 3,356 Chinese ancestry spontaneously recovered controls	6p21.32	HLA-DQB2	rs7453920-A		6E-6		2.0	[1.47-2.78]	Affymetrix, Illumina [up to 4494311] (imputed)	N
616	chr6_cox_hap2	4175914	4175915	rs7453920	25802187	Jiang DK	2015-04-28	Hepatology	Genetic variants in five novel loci including CFB and CD40 predispose to chronic hepatitis B.	Chronic hepatitis B infection	2,514 Chinese ancestry cases, 1,130 Chinese ancestry controls	6,600 Chinese ancestry cases, 8,127 Chinese ancestry controls	6p21.32	HLA-DQB2	rs7453920-A	0.88	1E-60		2.0	[1.82-2.17]	Illumina [3680900] (imputed)	N
616	chr6_cox_hap2	4175914	4175915	rs7453920	24940741	Chang SW	2014-06-18	PLoS One	A genome-wide association study on chronic HBV infection and its clinical progression in male Han-Taiwanese.	Chronic hepatitis B infection	321 Chinese ancestry cases, 304 Chinese ancestry controls	1,302 Chinese ancestry cases, 761 Chinese ancestry controls	6p21.32	HLA-DQB2	rs7453920-G	0.051	7E-15		2.31	[1.87-2.85]	Illumina [456262]	N
616	chr6_cox_hap2	4175914	4175915	rs7453920	24162738	Hu Z	2013-10-27	Nat Genet	New loci associated with chronic hepatitis B virus infection in Han Chinese.	Hepatitis B	951 Han Chinese ancestry HBV carrier cases, 937 Han Chinese ancestry HBV cleared controls	4,230 Chinese ancestry HBV carrier cases, 3,051 Chinese ancestry HBV cleared controls, 2,622 Chinese ancestry controls	6p21.32	HLA-DQB2	rs7453920-G	0.87	5E-37		1.8868	[1.69-2.08]	Illumina [490610]	N
616	chr6_cox_hap2	4175914	4175915	rs7453920	23760081	Kim YJ	2013-06-10	Hum Mol Genet	A genome-wide association study identified new variants associated with the risk of chronic hepatitis B.	Chronic hepatitis B infection	400 Korean ancestry cases, 1,000 Korean ancestry controls	971 Korean ancestry cases, 1,938 Korean ancestry controls	6p21.32	HLA-DQ	rs7453920-?	NR	7E-26		2.0	[1.72-2.27]	Illumina [719265]	N
616	chr6_cox_hap2	4175914	4175915	rs7453920	23349640	Vijai J	2013-01-17	PLoS Genet	Susceptibility loci associated with specific and shared subtypes of lymphoid malignancies.	Lymphoma	275 Follicular non-Hodgkin's Lymphoma cases, 269 diffuse large B-cell non-Hodgkin's Lymphoma cases, 198 other non-Hodgkin's Lymphoma cases, 202 Hodgkin's Lymphoma cases, 4,044 controls	202 European ancestry Follicular non-Hodgkin's Lymphoma cases, 367 European ancestry diffuse large B-cell non-Hodgkin's Lymphoma cases, 577 European ancestry other non-Hodgkin's Lymphoma cases, 99 European ancestry Hodgkin's Lymphoma cases, 2,596 European ancestry controls	6p21.32	HLA-DQB2	rs7453920-?	NR	5E-6	(LYM)	1.19	[1.11-1.3]	Affymetrix [530583]	N
616	chr6_cox_hap2	4175914	4175915	rs7453920	21750111	Mbarek H	2011-07-12	Hum Mol Genet	A genome-wide association study of chronic hepatitis B identified novel risk locus in a Japanese population.	Hepatitis B	458 Japanese ancestry cases, 2,056 Japanese ancestry controls	2,209 Japanese ancestry cases, 4,440 Japanese ancestry controls	6p21.32	HAL-DQB2	rs7453920-G	0.83	6E-28		1.81	[1.62-2.01]	Illumina [423627]	N
616	chr6_cox_hap2	4175988	4175989	rs2051549	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DQB2	rs2051549-G	NR	4E-9		0.0181006	[0.012-0.024] unit increase	Affymetrix [323123] (imputed)	N
616	chr6_cox_hap2	4175988	4175989	rs2051549	23053960	Lee YH	2012-10-07	Mol Biol Rep	Genome-wide pathway analysis of genome-wide association studies on systemic lupus erythematosus and rheumatoid arthritis.	Systemic lupus erythematosus	1,527 European ancestry cases, 3,421 European ancestry controls,	NA	6p21.32	HLA-DQA2	rs2051549-?	NR	3E-22				Illumina [737984]	N
616	chr6_cox_hap2	4176842	4176843	rs2071550	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	6p21.32	SLC44A4, EHMT2, HLA-DQB2, STK19, CYP21A2, TNXB	rs2071550-?	NR	7E-6				Affymetrix, Illumina [18800000] (imputed)	N
616	chr6_cox_hap2	4176842	4176843	rs2071550	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	6p21.32	SLC44A4, EHMT2, HLA-DQB2, STK19, CYP21A2, TNXB	rs2071550-?	NR	1E-9	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
616	chr6_cox_hap2	4176842	4176843	rs2071550	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	6p21.32	SLC44A4, EHMT2, HLA-DQB2, STK19, CYP21A2, TNXB	rs2071550-?	NR	5E-8	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
616	chr6_cox_hap2	4179531	4179532	rs33998906	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQB2	rs33998906-T	NR	5E-8		0.0304833	[0.02-0.041] unit increase	Affymetrix [319769] (imputed)	N
616	chr6_cox_hap2	4179531	4179532	rs33998906	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DQB2	rs33998906-T	NR	2E-8		0.0314602	[0.021-0.042] unit increase	Affymetrix [319769] (imputed)	N
616	chr6_cox_hap2	4180209	4180210	rs9276601	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQB2	rs9276601-G	NR	4E-8		0.0202269	[0.013-0.027] unit decrease	Affymetrix [319769] (imputed)	N
616	chr6_cox_hap2	4181910	4181911	rs9296042	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Scarlet fever	6,812 European ancestry cases, 113,837 European ancestry controls	NA	6p21.32	NR	rs9296042-?	NR	3E-6		0.0873	[0.051-0.124] unit decrease	Illumina [at least 560000] (imputed)	N
616	chr6_cox_hap2	4182600	4182601	rs9276606	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DQB2	rs9276606-T	NR	1E-9		0.021091	[0.014-0.028] unit decrease	Affymetrix [323858] (imputed)	N
616	chr6_cox_hap2	4182600	4182601	rs9276606	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	HLA-DQB2	rs9276606-T	NR	2E-9		0.0208414	[0.014-0.028] unit decrease	Affymetrix [127266] (imputed)	N
616	chr6_cox_hap2	4182600	4182601	rs9276606	23028341	Yang X	2012-09-13	PLoS Genet	Genome-wide association study for serum complement C3 and C4 levels in healthy Chinese subjects.	Complement C3 and C4 levels	1,999 Han Chinese ancestry male individuals	1,496 Han Chinese ancestry male individuals	6p21.32	HLA-DQB	rs9276606-T	0.15	3E-22	(Serum level of C4)	0.09	[0.070-0.110] g/L decrease	Illumina [1940245] (imputed)	N
616	chr6_cox_hap2	4186316	4186317	rs2857212	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.32		rs2857212-A	0.635	2E-33				Affymetrix [10369434] (imputed)	N
616	chr6_cox_hap2	4186316	4186317	rs2857212	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.32		rs2857212-A	0.635	2E-31				Affymetrix [10369434] (imputed)	N
616	chr6_cox_hap2	4186316	4186317	rs2857212	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.32		rs2857212-A	0.635	2E-57				Affymetrix [10369434] (imputed)	N
616	chr6_cox_hap2	4186911	4186912	rs2621419	33235445	Lee YJ	2020-11-17	Int J Chron Obstruct Pulmon Dis	A Genome-Wide Association Study in Early COPD: Identification of One Major Susceptibility Loci.	Early chronic obstructive pulmonary disease in never smokers	38 Korean ancestry cases, 1,778 Korean ancestry controls	NA	6p21.32	HLA-DQB2	rs2621419-?	NR	9E-6		0.68	NR	Affymetrix [345072]	N
616	chr6_cox_hap2	4187773	4187774	rs2621416	23349640	Vijai J	2013-01-17	PLoS Genet	Susceptibility loci associated with specific and shared subtypes of lymphoid malignancies.	Lymphoma	275 Follicular non-Hodgkin's Lymphoma cases, 269 diffuse large B-cell non-Hodgkin's Lymphoma cases, 198 other non-Hodgkin's Lymphoma cases, 202 Hodgkin's Lymphoma cases, 4,044 controls	202 European ancestry Follicular non-Hodgkin's Lymphoma cases, 367 European ancestry diffuse large B-cell non-Hodgkin's Lymphoma cases, 577 European ancestry other non-Hodgkin's Lymphoma cases, 99 European ancestry Hodgkin's Lymphoma cases, 2,596 European ancestry controls	6p21.32	HLA-DQB2, TAP2	rs2621416-G	NR	2E-9	(FL)	1.57	[NR]	Affymetrix [530583]	N
616	chr6_cox_hap2	4188000	4188001	rs9276610	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DQB2	rs9276610-A	NR	1E-9		0.0272626	[0.018-0.036] unit increase	Affymetrix [323123] (imputed)	N
616	chr6_cox_hap2	4188732	4188733	rs12663317	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	6p21.32	NR	rs12663317-?	NR	6E-12				Affymetrix [~ 8270000] (imputed)	N
616	chr6_cox_hap2	4190252	4190253	rs2857204	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	6p21.32	intergenic	rs2857204-T	0.327	9E-19		0.03378215	[0.026-0.041] unit decrease	Affymetrix [~ 2500000] (imputed)	N
616	chr6_cox_hap2	4190345	4190346	rs28724893	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQB2	rs28724893-T	NR	2E-8		0.0157586	[0.01-0.021] unit decrease	Affymetrix [319769] (imputed)	N
616	chr6_cox_hap2	4190345	4190346	rs28724893	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DQB2	rs28724893-T	NR	4E-11		0.0202278	[0.014-0.026] unit increase	Affymetrix [323123] (imputed)	N
616	chr6_cox_hap2	4190741	4190742	rs9276643	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6p21.32	NR	rs9276643-C	0.6647	8E-12		1.0858942	[1.06-1.11]	Affymetrix [15688218] (imputed)	N
616	chr6_cox_hap2	4190741	4190742	rs9276643	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	6p21.32	NR	rs9276643-?	NR	7E-105	(conditional)			Affymetrix [15688218] (imputed)	N
616	chr6_cox_hap2	4191434	4191435	rs12661352	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs12661352-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
616	chr6_cox_hap2	4192236	4192237	rs9501203	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.32		rs9501203-T	0.677	8E-12				Affymetrix [10369434] (imputed)	N
617	chr6_cox_hap2	4194859	4194860	rs28986343	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous malignant melanoma	36,760 European ancestry cases, 375,188 European ancestry controls	NA	6p21.32	HLA-DQB2	rs28986343-C	0.952	2E-8		1.1531	NR	Affymetrix, Illumina [NR] (imputed)	N
617	chr6_cox_hap2	4197012	4197013	rs7749543	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6p21.32	NR	rs7749543-G	0.6269	8E-10		1.0775862	[1.05-1.1]	Affymetrix [15688218] (imputed)	N
617	chr6_cox_hap2	4197012	4197013	rs7749543	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	6p21.32	NR	rs7749543-?	NR	8E-115	(conditional)			Affymetrix [15688218] (imputed)	N
617	chr6_cox_hap2	4197012	4197013	rs7749543	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p21.32	NR	rs7749543-?	NR	3E-6		0.0596	[0.035-0.085] unit increase	Illumina [at least 560000] (imputed)	N
617	chr6_cox_hap2	4203997	4203998	rs7758736	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DOB	rs7758736-A	NR	1E-9		0.02222	[0.015-0.029] unit decrease	Affymetrix [321169] (imputed)	N
617	chr6_cox_hap2	4207114	4207115	rs4318925	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DOB	rs4318925-T	NR	3E-9		0.0220014	[0.015-0.029] unit decrease	Affymetrix [321169] (imputed)	N
617	chr6_cox_hap2	4209120	4209121	rs2857151	22446962	Onouchi Y	2012-03-25	Nat Genet	A genome-wide association study identifies three new risk loci for Kawasaki disease.	Kawasaki disease	428 Japanese ancestry cases, 3,379 Japanese ancestry controls	754 Japanese ancestry cases, 947 Japanese ancestry controls	6p21.32	HLA-DOB, HLA-DQB2	rs2857151-G	0.76	5E-11		1.47	[1.23-1.77]	Illumina [463793]	N
617	chr6_cox_hap2	4210133	4210134	rs62398467	34011352	Schwarm C	2021-05-19	Orphanet J Rare Dis	Identification of two novel bullous pemphigoid- associated alleles, HLA-DQA1*05:05 and -DRB1*07:01, in Germans.	Bullous pemphigoid	438 German cases, 417 German controls	NA	6p21.32	HLA-DQB2, HLA-DOB	rs62398467-?	NR	7E-6		0.520158	[0.29-0.75] unit increase	Affymetrix [up to 386296] (imputed)	N
617	chr6_cox_hap2	4211178	4211179	rs9276731	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DOB	rs9276731-T	NR	1E-15		0.0382096	[0.029-0.048] unit decrease	Affymetrix [323858] (imputed)	N
617	chr6_cox_hap2	4211178	4211179	rs9276731	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	HLA-DOB	rs9276731-T	NR	3E-14		0.0364203	[0.027-0.046] unit decrease	Affymetrix [127266] (imputed)	N
617	chr6_cox_hap2	4211178	4211179	rs9276731	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p21.32	HLA-DOB	rs9276731-T	NR	1E-8		0.0269325	[0.018-0.036] unit decrease	Affymetrix [323858] (imputed)	N
617	chr6_cox_hap2	4214985	4214986	rs2621363	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6p21.32	NR	rs2621363-T	0.7091	8E-13		1.0481081	[1.04-1.06]	Affymetrix [15688218] (imputed)	N
617	chr6_cox_hap2	4214985	4214986	rs2621363	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	6p21.32	NR	rs2621363-?	NR	7E-31	(conditional)			Affymetrix [15688218] (imputed)	N
617	chr6_cox_hap2	4216075	4216076	rs151165576	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Treatment or medication use - insulin product (UKB data field 20003_1140883066)	4,469 European ancestry cases, 451,807 European ancestry controls	NA	6p21.32		rs151165576-A	0.003916	2E-15		1.58	[1.19-1.97] unit increase	NR [11842647] (imputed)	N
617	chr6_cox_hap2	4216937	4216938	rs2621355	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.32	Intergenic	rs2621355-G	NR	5E-8		0.0202164	[0.013-0.028] unit increase	Illumina [13520550] (imputed)	N
617	chr6_cox_hap2	4218451	4218452	rs9276757	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.32		rs9276757-A	0.772	8E-30				Affymetrix [10369434] (imputed)	N
617	chr6_cox_hap2	4222509	4222510	rs1054684	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DOB	rs1054684-C	NR	2E-10		0.0303692	[0.021-0.04] unit increase	Affymetrix [323123] (imputed)	N
617	chr6_cox_hap2	4222509	4222510	rs1054684	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.32	TAP2, HLA-DOB	rs1054684-C	0.115598	1E-11		0.03328803	[0.024-0.043] unit increase	Affymetrix [93095623] (imputed)	N
617	chr6_cox_hap2	4222509	4222510	rs1054684	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	6p21.32	NR	rs1054684-C	0.114999	1E-8		0.0591419	[0.038-0.08] unit increase	Affymetrix [17914406] (imputed)	N
617	chr6_cox_hap2	4223509	4223512	rs144227975	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs144227975-CTTT	0.665	4E-15	(conditional)	0.864	[0.83-0.9]	Illumina [11270530] (imputed)	N
617	chr6_cox_hap2	4224014	4224015	rs9276796	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6p21.32	NR	rs9276796-G	0.3953	1E-20		1.058	[1.046-1.07]	Affymetrix [15688218] (imputed)	N
617	chr6_cox_hap2	4224250	4224251	rs1812006	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.32	Intergenic	rs1812006-G	NR	1E-7	(women)	0.0361932	[0.023-0.05] unit decrease	Illumina [13520550] (imputed)	N
617	chr6_cox_hap2	4225253	4225254	rs11244	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p21.32	HLA-DOB	rs11244-A	0.43	4E-11				Illumina [118177]	N
617	chr6_cox_hap2	4225641	4225642	rs2071479	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	6p21.32	HLA-DOB	rs2071479-T	0.0273617407137154	7E-11		0.1473	[0.1-0.19] unit increase	NR [5035015] (imputed)	N
617	chr6_cox_hap2	4226305	4226306	rs2856997	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DOB, TAP2	rs2856997-A	NR	9E-9		0.0165451	[0.011-0.022] unit decrease	Affymetrix [321016] (imputed)	N
617	chr6_cox_hap2	4227111	4227112	rs2071474	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Strep throat	52,487 European ancestry cases, 22,017 European ancestry controls	NA	6p21.32	NR	rs2071474-?	NR	6E-6		0.027	[0.015-0.039] unit increase	Illumina [at least 560000] (imputed)	N
617	chr6_cox_hap2	4227134	4227135	rs2071473	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.32		rs2071473-C	0.671	2E-23				Affymetrix [10369434] (imputed)	N
617	chr6_cox_hap2	4227134	4227135	rs2071473	33106546	Johnson TA	2020-10-26	J Hum Genet	Association of an IGHV3-66 gene variant with Kawasaki disease.	Kawasaki disease	1,276 East Asian ancestry cases, 5,086 East Asian ancestry controls	2,152 East Asian ancestry cases, 2,751 East Asian ancestry controls	6p21.32	HLA-DOB	rs2071473-T	NR	7E-13		1.26	[1.18-1.34]	Affymetrix, Illumina [6265045] (imputed)	N
617	chr6_cox_hap2	4227615	4227616	rs7383287	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in ever smokers	23,223 European ancestry cases,  16,964 European ancestry controls	NA	6p21.32	HLA-DOB	rs7383287-G	0.224903192	1E-10		1.1205634	[1.082275651-1.160205575]	Illumina [10439017] (imputed)	N
617	chr6_cox_hap2	4227615	4227616	rs7383287	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	6p21.32	NR	rs7383287-A	NR	1E-7		1.07	[NR]	Illumina [7158791] (imputed)	N
617	chr6_cox_hap2	4227934	4227935	rs1383258	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p21.32	HLA-DOB	rs1383258-A	0.04	2E-10	(EA)	3.68	[2.40-5.64]	Illumina [up to 547389]	N
617	chr6_cox_hap2	4229312	4229313	rs2071469	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Chronic lymphocytic leukemia	764 White British ancestry cases, 272,079 White British ancestry controls	NA	6p21.32		rs2071469-?	NR	7E-6		0.775782	[0.67-0.89]	NR [663083]	N
617	chr6_cox_hap2	4231446	4231447	rs3763354	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	6p21.32	Intergenic	rs3763354-G	NR	4E-12		0.0433868	[0.031-0.056] unit decrease	Illumina [13520550] (imputed)	N
617	chr6_cox_hap2	4231565	4231566	rs1894407	24586183	Medici M	2014-02-27	PLoS Genet	Identification of novel genetic Loci associated with thyroid peroxidase antibodies and clinical thyroid disease.	Thyroid peroxidase antibody positivity	1,769 European ancestry cases, 16,528 European ancestry controls	922 European ancestry cases, 8,068 European ancestry controls	6p21.32	NR	rs1894407-C		1E-7		1.17	[1.11-1.24]	Affymetrix, Illumina [up to 3437411] (imputed)	N
617	chr6_cox_hap2	4231704	4231705	rs9784858	26272072	Jiang X	2015-08-13	Rheumatology (Oxford)	An Immunochip-based interaction study of contrasting interaction effects with smoking in ACPA-positive versus ACPA-negative rheumatoid arthritis.	ACPA-positive rheumatoid arthritis (smoking interaction)	340 European ancestry never-smoker cases, 493 European ancestry ever-smoker cases, 746 European ancestry never-smoker controls, 994 European ancestry ever-smoker controls	187 European ancestry never-smoker cases, 421 European ancestry ever-smoker cases, 461 European ancestry never-smoker controls, 447 European ancestry ever-smoker controls	6p21.32	NR	rs9784858-?	NR	9E-12	(adjusted for HLA shared epitope)	1.4084507	[1.09-1.96]	Illumina [133648] (imputed)	N
617	chr6_cox_hap2	4233241	4233242	rs2621322	30552173	Aterido A	2018-12-14	Ann Rheum Dis	Genetic variation at the glycosaminoglycan metabolism pathway contributes to the risk of psoriatic arthritis but not psoriasis.	Psoriatic arthritis	744 Spanish ancestry cases, 1,454 Spanish ancestry controls	1,430 cases, 1,417 controls	6p21.32	NR	rs2621322-?	NR	2E-8		5.6	[NR] z-score decrease	Illumina [1387382] (imputed)	N
617	chr6_cox_hap2	4233929	4233930	rs151027268	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.32	NR	rs151027268-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
617	chr6_cox_hap2	4238051	4238052	rs13501	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	TAP2	rs13501-A	NR	3E-9		0.0199818	[0.013-0.027] unit decrease	Affymetrix [323123] (imputed)	N
617	chr6_cox_hap2	4239560	4239561	rs10484565	26272072	Jiang X	2015-08-13	Rheumatology (Oxford)	An Immunochip-based interaction study of contrasting interaction effects with smoking in ACPA-positive versus ACPA-negative rheumatoid arthritis.	ACPA-positive rheumatoid arthritis (smoking interaction)	340 European ancestry never-smoker cases, 493 European ancestry ever-smoker cases, 746 European ancestry never-smoker controls, 994 European ancestry ever-smoker controls	187 European ancestry never-smoker cases, 421 European ancestry ever-smoker cases, 461 European ancestry never-smoker controls, 447 European ancestry ever-smoker controls	6p21.32	NR	rs10484565-?	NR	7E-10	(adjusted for HLA shared epitope)	1.4285715	[1.09-2.13]	Illumina [133648] (imputed)	N
617	chr6_cox_hap2	4240754	4240755	rs241453	32492067	Ruffieux H	2020-06-03	PLoS Comput Biol	A fully joint Bayesian quantitative trait locus mapping of human protein abundance in plasma.	Protein quantitative trait loci	376 European ancestry individuals	400 European ancestry individuals	6p21.32	NR	rs241453-?	NR	2E-6	(C4a)			Illumina [~ 4000000] (imputed)	N
617	chr6_cox_hap2	4241643	4241644	rs241443	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	6p21.32	TAP2	rs241443-G	0.294917	2E-19		0.022992264	[0.018-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
617	chr6_cox_hap2	4242301	4242302	rs2228391	26151496	Chen PL	2015-07-07	Nat Commun	Genetic determinants of antithyroid drug-induced agranulocytosis by human leukocyte antigen genotyping and genome-wide association study.	Thionamide-induced agranulocytosis in Graves' disease	21 East Asian ancestry cases with agranulocytosis, 662 East Asian ancestry cases without agranulocytosis	21 East Asian ancestry cases with agranulocytosis, 546 East Asian ancestry cases without agranulocytosis	6p21.32	HLA	rs2228391-C	0.108	4E-7	(trend)	3.32	[2.02-5.46] (allelic)	Affymetrix [522980]	N
617	chr6_cox_hap2	4242404	4242405	rs241436	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6p21.32		rs241436-?	NR	7E-9		1.06498	[1.04-1.09]	NR [685523]	N
617	chr6_cox_hap2	4242404	4242405	rs241436	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in lean individuals	up to 5,529 European ancestry male individuals, up to 9,753 European ancestry female individuals	NA	6p21.32	TAP2	rs241436-G	0.49	8E-6	(men)	0.089	[0.05-0.128] kg/m2 increase	Affymetrix, Illumina [at least 188473] (imputed)	N
617	chr6_cox_hap2	4243259	4243260	rs1015166	29534301	Nishida N	2018-03-13	Hepatology	Key HLA-DRB1-DQB1 haplotypes and role of the BTNL2 gene for response to a hepatitis B vaccine.	Response to hepatitis B vaccine	107 Japanese ancestry low responder individuals, 351 Japanese ancestry intermediate responder individuals, 735 Japanese ancestry high responder individuals	NA	6p21.32	TAP2	rs1015166-?		1E-8		0.16	unit decrease	Affymetrix [427664]	N
617	chr6_cox_hap2	4243259	4243260	rs1015166	25936594	Tomer Y	2015-04-27	J Autoimmun	Genome wide identification of new genes and pathways in patients with both autoimmune thyroiditis and type 1 diabetes.	Type 1 diabetes and autoimmune thyroid diseases	346 European ancestry cases, 727 European ancestry controls	185 European ancestry cases, 340 European ancestry controls	6p21.32	TAP2	rs1015166-T	NR	4E-22		2.1428		Illumina [514008]	N
617	chr6_cox_hap2	4244373	4244374	rs60045856	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	6p21.32	NR	rs60045856-G	0.11004825178496	5E-12		0.0101193655	[0.0072-0.013] unit decrease	NR [NR]	N
617	chr6_cox_hap2	4244373	4244374	rs60045856	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p21.32	NR	rs60045856-?	NR	3E-8		0.0829	[0.054-0.112] unit increase	Illumina [at least 560000] (imputed)	N
617	chr6_cox_hap2	4246990	4246991	rs62397688	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	IgA nephropathy	1,180 East Asian ancestry cases, 899 East Asian ancestry controls	NA			rs62397688-A	NR	4E-6		0.58857	[0.34-0.84] unit decrease	Illumina [NR] (imputed)	N
617	chr6_cox_hap2	4247335	4247336	rs4148872	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Diastolic blood pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	6p21.32	HLA	rs4148872-T	0.148057452	2E-7		0.2012	[0.13-0.28] unit increase	Affymetrix [~ 9800000] (imputed)	N
617	chr6_cox_hap2	4247936	4247937	rs28724898	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p21.32	NR	rs28724898-?	NR	4E-13		0.1556	[0.11-0.2] unit decrease	Illumina [at least 560000] (imputed)	N
617	chr6_cox_hap2	4248367	4248368	rs241429	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	TAP2	rs241429-A	NR	3E-8		0.0169285	[0.011-0.023] unit increase	Affymetrix [323123] (imputed)	N
617	chr6_cox_hap2	4248597	4248598	rs241428	23028341	Yang X	2012-09-13	PLoS Genet	Genome-wide association study for serum complement C3 and C4 levels in healthy Chinese subjects.	Complement C3 and C4 levels	1,999 Han Chinese ancestry male individuals	1,496 Han Chinese ancestry male individuals	6p21.32	HLA-DQB	rs241428-G	0.08	9E-83	(Serum level of C4)	0.23	[0.21-0.25] g/L increase	Illumina [1940245] (imputed)	N
617	chr6_cox_hap2	4248746	4248747	rs3819715	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (mother's age at death or mother's attained age)	up to 699,000 individuals	NA	6p21.32	NR	rs3819715-C		7E-6				Illumina [458525]	N
617	chr6_cox_hap2	4248826	4248827	rs3819717	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (non-Lofgren's syndrome without extrapulmonary manifestations)	451 Swedish ancestry cases, 2,086 Swedish ancestry controls	NA	6p21.32	TAP2, PSMB9, HLA-DMB, HLA-DPB1	rs3819717-G	0.515	2E-6		1.434	[1.249-1.648]	Illumina [118177]	N
617	chr6_cox_hap2	4248941	4248942	rs241427	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p21.32	TAP2	rs241427-G	0.797	4E-6		0.062	[0.035-0.089] unit decrease	Affymetrix, Illumina [7374092] (imputed)	N
617	chr6_cox_hap2	4249097	4249098	rs3819720	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.32	NR	rs3819720-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
617	chr6_cox_hap2	4249097	4249098	rs3819720	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs3819720-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
617	chr6_cox_hap2	4249097	4249098	rs3819720	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p21.32	NR	rs3819720-?	NR	1E-12		0.1645	[0.12-0.21] unit decrease	Illumina [at least 560000] (imputed)	N
617	chr6_cox_hap2	4249406	4249407	rs1871665	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.32		rs1871665-T	0.55322	1E-12		1.0307605	[1.02-1.04]	Affymetrix, Illumina [9851866] (imputed)	N
617	chr6_cox_hap2	4249576	4249577	rs2239701	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	Composite immunoglobulin trait (IgA/IgG)	14,183 Icelandic ancestry individuals	2,146 Swedish ancestry individuals	6p21.32	TAP2	rs2239701-C	0.368	3E-10		0.08	NR SD units decrease	Illumina [21568490] (imputed)	N
617	chr6_cox_hap2	4249834	4249835	rs2071466	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.32		rs2071466-C	0.704	1E-10				Affymetrix [10369434] (imputed)	N
617	chr6_cox_hap2	4249834	4249835	rs2071466	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p21.32	TAP2	rs2071466-T		1E-24		0.024	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
617	chr6_cox_hap2	4250918	4250919	rs4148870	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p21.32	TAP2	rs4148870-C	0.402	2E-6		0.053	[0.031-0.075] unit increase	Affymetrix, Illumina [7374092] (imputed)	N
617	chr6_cox_hap2	4251080	4251081	rs74365910	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Ulcerative colitis (PheCode 555.2)	2,569 European ancestry cases, 453,779 European ancestry controls	NA	6p21.32		rs74365910-A	0.009189	9E-10		0.97	[0.66-1.28] unit increase	NR [11842647] (imputed)	N
617	chr6_cox_hap2	4251080	4251081	rs74365910	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Treatment or medication use - levothyroxine sodium (UKB data field 20003_1141191044)	18,688 European ancestry cases, 437,588 European ancestry controls	NA	6p21.32		rs74365910-A	0.009068	2E-15		0.46	[0.35-0.57] unit increase	NR [11842647] (imputed)	N
617	chr6_cox_hap2	4252017	4252018	rs114595701	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	6p21.32	NR	rs114595701-T	0.0925422107617213	2E-9		0.012502657	[0.0084-0.0166] unit decrease	NR [NR]	N
617	chr6_cox_hap2	4252017	4252018	rs114595701	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	6p21.32	NR	rs114595701-T	0.0925422107617213	6E-9		0.013367118	[0.0089-0.0179] unit decrease	NR [NR]	N
617	chr6_cox_hap2	4252017	4252018	rs114595701	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	6p21.32	NR	rs114595701-T	0.0925422107617213	2E-9		0.010604257	[0.0071-0.0141] unit decrease	NR [NR]	N
617	chr6_cox_hap2	4252826	4252827	rs45506201	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	6p21.32	NR	rs45506201-A	0.0926176111889165	4E-9		0.015973978	[0.011-0.021] unit decrease	NR [NR]	N
617	chr6_cox_hap2	4254375	4254376	rs9357155	21399633	Gharavi AG	2011-03-13	Nat Genet	Genome-wide association study identifies susceptibility loci for IgA nephropathy.	Nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls	712 Han Chinese ancestry cases, 748 Han Chinese ancestry controls, 1,238 European ancestry cases, 1,172 European ancestry controls	6p21.32	TAP2, TAP1, PSMB8, PSMB9	rs9357155-?	0.87 (EA)	2E-12		1.41	[NR]	Illumina [498322]	N
617	chr6_cox_hap2	4256156	4256157	rs2071543	32912934	Li M	2020-09-10	J Am Soc Nephrol	Genome-Wide Meta-Analysis Identifies Three Novel Susceptibility Loci and Reveals Ethnic Heterogeneity of Genetic Susceptibility for IgA Nephropathy.	IgA nephropathy	2,628 Chinese ancestry cases, 11,563 Chinese ancestry controls	6,879 Han Chinese ancestry cases, 9,019 Han Chinese ancestry controls, 1,039 Italian ancestry cases, 1,289 Italian ancestry controls	6p21.32	PSMB8	rs2071543-G	0.8187836227622588	1E-6	(East Asian)	1.2505606	[1.14305470436016-1.36817776509077]	NR [3611808] (imputed)	N
617	chr6_cox_hap2	4256156	4256157	rs2071543	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	6p21.32	PSMB9, TAP1, TAP2, PSMB8	rs2071543-G	0.80	2E-9	(East Asian)	1.41	[NR]	Illumina [> 1000000] (imputed)	N
617	chr6_cox_hap2	4257055	4257056	rs2071463	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	6p21.32		rs2071463-?	NR	5E-8				Affymetrix [NR] (imputed)	N
617	chr6_cox_hap2	4262557	4262558	rs113206908	32771030	Tangtanatakul P	2020-08-08	Arthritis Res Ther	Meta-analysis of genome-wide association study identifies FBN2 as a novel locus associated with systemic lupus erythematosus in Thai population.	Systemic lupus erythematosus	487 Thai cases, 1,606 Thai controls	405 Thai cases, 1,590 Thai controls	6p21.32	PSMB9	rs113206908-G	0.21	4E-7		1.4327	[NR]	Illumina [421909] (imputed)	N
617	chr6_cox_hap2	4263205	4263206	rs2071538	32534018	Liu X	2020-06-10	Brain Behav Immun	Genetic factors underlying the bidirectional relationship between autoimmune and mental disorders - findings from a Danish population-based study.	Autoimmune traits	1,383 Danish ancestry cases, 62,656 Danish ancestry controls	NA	6p21.32	NR	rs2071538-A	0.24	8E-10		0.74	[0.67-0.82]	NR [7721839] (imputed)	N
617	chr6_cox_hap2	4265974	4265975	rs2071536	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	PSMB9, TAP1	rs2071536-T	NR	5E-8		0.0260034	[0.017-0.035] unit decrease	Affymetrix [323123] (imputed)	N
617	chr6_cox_hap2	4265974	4265975	rs2071536	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.32		rs2071536-T	0.111873	8E-10		1.0421276	[1.03-1.05]	Affymetrix, Illumina [9851866] (imputed)	N
617	chr6_cox_hap2	4266771	4266772	rs17220241	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.32	HLA-Z, TAP2, PSMB9, PSMB8-AS1, XXbac-BPG246D15.9, TAP1, PSMB8	rs17220241-T	0.02156469	1E-21	(EA, Alpha-2-macroglobulin receptor-associated protein)	1.387	[1.11-1.66] unit increase	Affymetrix [509946]	N
617	chr6_cox_hap2	4274541	4274542	rs7767288	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	6p21.32	PSMB9	rs7767288-A	0.4112	1E-11		0.02464776	[0.018-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
617	chr6_cox_hap2	4277313	4277314	rs1055559	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	6p21.32	NR	rs1055559-?	NR	9E-7		0.079	[0.047-0.111] unit increase	Illumina [at least 560000] (imputed)	N
617	chr6_cox_hap2	4277313	4277314	rs1055559	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	6p21.32	Intergenic	rs1055559-T	NR	4E-9		0.039613	[0.026-0.053] unit decrease	Illumina [13520550] (imputed)	N
617	chr6_cox_hap2	4287502	4287503	rs6903433	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.32		rs6903433-C	0.87	7E-9				Affymetrix [10369434] (imputed)	N
617	chr6_cox_hap2	4297174	4297175	rs2187689	22993228	Williams FM	2012-09-19	Ann Rheum Dis	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NA	6p21.32	PSMB9	rs2187689-C	0.08	3E-8		0.23	[0.15-0.31] unit increase	Affymetrix, Illumina [2552511] (imputed)	N
617	chr6_cox_hap2	4297749	4297749	rs11459466	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	PPP1R2P1	rs11459466-GT	NR	4E-8		0.0204679	[0.013-0.028] unit increase	Affymetrix [323858] (imputed)	N
617	chr6_cox_hap2	4297804	4297805	rs7767732	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.32		rs7767732-C	0.822	3E-21				Affymetrix [10369434] (imputed)	N
617	chr6_cox_hap2	4299220	4299221	rs10046257	22993228	Williams FM	2012-09-19	Ann Rheum Dis	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NA	6p21.32	intergenic	rs10046257-A	0.10	3E-7		0.19	[0.12-0.26] unit increase	Affymetrix, Illumina [2552511] (imputed)	N
617	chr6_cox_hap2	4300240	4300241	rs6457690	22993228	Williams FM	2012-09-19	Ann Rheum Dis	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NA	6p21.32	intergenic	rs6457690-A	0.10	9E-8		0.19	[0.12-0.26] unit increase	Affymetrix, Illumina [2552511] (imputed)	N
617	chr6_cox_hap2	4300904	4300905	rs1029296	22993228	Williams FM	2012-09-19	Ann Rheum Dis	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NA	6p21.32	intergenic	rs1029296-C	0.10	9E-8		0.19	[0.12-0.26] unit increase	Affymetrix, Illumina [2552511] (imputed)	N
617	chr6_cox_hap2	4301005	4301006	rs1029295	22993228	Williams FM	2012-09-19	Ann Rheum Dis	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NA	6p21.32	intergenic	rs1029295-C	0.10	5E-7		0.19	[0.12-0.26] unit increase	Affymetrix, Illumina [2552511] (imputed)	N
617	chr6_cox_hap2	4301457	4301458	rs6936004	22993228	Williams FM	2012-09-19	Ann Rheum Dis	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NA	6p21.32	intergenic	rs6936004-C	0.10	1E-7		0.19	[0.12-0.26] unit increase	Affymetrix, Illumina [2552511] (imputed)	N
617	chr6_cox_hap2	4301942	4301943	rs10214886	22993228	Williams FM	2012-09-19	Ann Rheum Dis	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NA	6p21.32	intergenic	rs10214886-A	0.10	2E-7		0.19	[0.12-0.26] unit increase	Affymetrix, Illumina [2552511] (imputed)	N
617	chr6_cox_hap2	4302059	4302060	rs10214760	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6p21.32	TAP1	rs10214760-?	NR	3E-6	(dimethylglycine)	0.3002602	[0.17-0.43] unit decrease	Affymetrix [at least 2500000] (imputed)	N
617	chr6_cox_hap2	4304235	4304236	rs7744666	22993228	Williams FM	2012-09-19	Ann Rheum Dis	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NA	6p21.32	intergenic	rs7744666-C	0.10	6E-8		0.2	[0.13-0.27] unit increase	Affymetrix, Illumina [2552511] (imputed)	N
617	chr6_cox_hap2	4304271	4304272	rs11969002	22993228	Williams FM	2012-09-19	Ann Rheum Dis	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NA	6p21.32	intergenic	rs11969002-A	0.10	6E-8		0.2	[0.13-0.27] unit increase	Affymetrix, Illumina [2552511] (imputed)	N
617	chr6_cox_hap2	4305275	4305276	rs9469300	22993228	Williams FM	2012-09-19	Ann Rheum Dis	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NA	6p21.32	intergenic	rs9469300-A	0.10	1E-7		0.19	[0.12-0.26] unit increase	Affymetrix, Illumina [2552511] (imputed)	N
617	chr6_cox_hap2	4307130	4307131	rs3749982	22993228	Williams FM	2012-09-19	Ann Rheum Dis	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NA	6p21.32	intergenic	rs3749982-A	0.10	1E-7		0.19	[0.12-0.26] unit increase	Affymetrix, Illumina [2552511] (imputed)	N
617	chr6_cox_hap2	4310618	4310619	rs9276916	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	Systemic lupus erythematosus	1,639 East Asian ancestry cases, 2,410 East Asian ancestry controls	NA			rs9276916-G	NR	2E-8		0.2244	[0.15-0.3] unit increase	Illumina [NR] (imputed)	N
617	chr6_cox_hap2	4314581	4314582	rs3101942	26297903	Fabbri C	2015-08-20	Prog Neuropsychopharmacol Biol Psychiatry	Genetics of long-term treatment outcome in bipolar disorder.	Manic episodes in bipolar disorder	706 European ancestry cases	NA	6p21.32	LOC100294145	rs3101942-?	NR	7E-6		1.733	[1.365-2.201]	Affymetrix [329806] (imputed)	N
617	chr6_cox_hap2	4317443	4317444	rs574560492	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs574560492-?	NR	5E-8				Affymetrix [~ 8270000] (imputed)	N
618	chr6_cox_hap2	4332759	4332760	rs117231810	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.32	Intergenic	rs117231810-?		4E-6		1.06	[1.03-1.08]	Illumina [7645193] (imputed)	N
618	chr6_cox_hap2	4332759	4332760	rs117231810	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.32	Intergenic	rs117231810-?		1E-6		1.69	[1.37-2.09]	Illumina [7645193] (imputed)	N
618	chr6_cox_hap2	4335861	4335862	rs194679	32534018	Liu X	2020-06-10	Brain Behav Immun	Genetic factors underlying the bidirectional relationship between autoimmune and mental disorders - findings from a Danish population-based study.	Autoimmune traits	1,383 Danish ancestry cases, 62,656 Danish ancestry controls	NA	6p21.32	NR	rs194679-T	0.047	1E-9		1.62	[1.4-1.87]	NR [7721839] (imputed)	N
618	chr6_cox_hap2	4344906	4344908	rs57390839	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	6p21.32	PSMB9, HLA-DMB	rs57390839-?	NR	2E-15		0.303437	[0.23-0.38] unit increase	Illumina [at least 950000] (imputed)	N
618	chr6_cox_hap2	4344906	4344908	rs57390839	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p21.32	NR	rs57390839-?	NR	1E-7		0.0931	[0.058-0.128] unit increase	Illumina [at least 560000] (imputed)	N
618	chr6_cox_hap2	4348562	4348563	rs77318243	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DMB	rs77318243-A	NR	3E-11		0.0352508	[0.025-0.046] unit decrease	Affymetrix [323858] (imputed)	N
618	chr6_cox_hap2	4348562	4348563	rs77318243	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	HLA-DMB	rs77318243-A	NR	2E-10		0.0339654	[0.024-0.044] unit decrease	Affymetrix [127266] (imputed)	N
618	chr6_cox_hap2	4352496	4352497	rs147725790	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6p21.32	NR	rs147725790-T	0.98229	2E-12		1.1804981	[1.13-1.23]	Affymetrix [15688218] (imputed)	N
618	chr6_cox_hap2	4355853	4355854	rs116560929	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.32	NR	rs116560929-A	0.01045	3E-9	(FHL1)	0.008308	NR unit increase	Illumina [1671387] (imputed)	N
618	chr6_cox_hap2	4355853	4355854	rs116560929	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.32	NR	rs116560929-A	0.01045	3E-10	(TAGLN)	0.4341	NR unit increase	Illumina [1671387] (imputed)	N
618	chr6_cox_hap2	4355853	4355854	rs116560929	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.32	NR	rs116560929-A	0.01045	2E-8	(CNN2)	0.01914	NR unit increase	Illumina [1671387] (imputed)	N
618	chr6_cox_hap2	4356339	4356340	rs2395296	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs2395296-A	NR	9E-8		1.089	[1.055-1.124]	Affymetrix [7846216] (imputed)	N
618	chr6_cox_hap2	4357771	4357772	rs1480380	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p21.32	HLA-DMB, HLA-DMA	rs1480380-A	0.252	6E-23				Illumina [118177]	N
618	chr6_cox_hap2	4357771	4357772	rs1480380	23453885	Smoller JW	2013-02-27	Lancet	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NA	6p21.32	NR	rs1480380-C	0.908	6E-7	(Modelling analysis)			NR [1252901] (imputed)	N
618	chr6_cox_hap2	4357771	4357772	rs1480380	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.32	intergenic	rs1480380-T	0.0877	4E-39		3.05	[NR]	Illumina [242824]	N
618	chr6_cox_hap2	4359251	4359252	rs73396800	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	6p21.32	NR	rs73396800-G	NR	4E-16		1.1904762	[NR]	Illumina [7158791] (imputed)	N
618	chr6_cox_hap2	4360376	4360377	rs16871226	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	NR	rs16871226-G	0.0244821228239845	2E-6	(IGP67)	0.5182	[0.3-0.73] unit increase	Illumina [~ 2500000] (imputed)	N
618	chr6_cox_hap2	4362984	4362985	rs12153970	26584805	Dorajoo R	2015-11-19	Genes Nutr	A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.	Plasma omega-3 polyunsaturated fatty acid levels (docosahexaenoic acid)	717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls	NA	6p21.32	NR	rs12153970-G	0.9496	4E-6		0.2241	[0.13-0.32] unit increase	Illumina [up to 1980188] (imputed)	N
618	chr6_cox_hap2	4364103	4364104	rs146693865	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.32	NR	rs146693865-G	0.01045	3E-9	(FHL1)	0.008308	NR unit increase	Illumina [1671387] (imputed)	N
618	chr6_cox_hap2	4364103	4364104	rs146693865	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.32	NR	rs146693865-G	0.01045	3E-10	(TAGLN)	0.4341	NR unit increase	Illumina [1671387] (imputed)	N
618	chr6_cox_hap2	4364103	4364104	rs146693865	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.32	NR	rs146693865-G	0.01045	2E-8	(CNN2)	0.01914	NR unit increase	Illumina [1671387] (imputed)	N
618	chr6_cox_hap2	4366987	4366988	rs9378127	30552173	Aterido A	2018-12-14	Ann Rheum Dis	Genetic variation at the glycosaminoglycan metabolism pathway contributes to the risk of psoriatic arthritis but not psoriasis.	Psoriatic arthritis	744 Spanish ancestry cases, 1,454 Spanish ancestry controls	1,430 cases, 1,417 controls	6p21.32	NR	rs9378127-?	NR	4E-7		5.07	[NR] z-score increase	Illumina [1387382] (imputed)	N
618	chr6_cox_hap2	4369113	4369114	rs209474	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.32		rs209474-A	0.623	4E-15				Affymetrix [10369434] (imputed)	N
618	chr6_cox_hap2	4369113	4369114	rs209474	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	6p21.32	HLA-DMA	rs209474-G	0.377123	1E-12		0.016615335	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
618	chr6_cox_hap2	4369113	4369114	rs209474	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	6p21.32	HLA-DMA	rs209474-G	0.377106	6E-15		0.018046945	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
618	chr6_cox_hap2	4369113	4369114	rs209474	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	6p21.32	NR	rs209474-A	0.624456	7E-9		0.0127924	[0.0085-0.0171] unit decrease	NR [NR]	N
618	chr6_cox_hap2	4369113	4369114	rs209474	29121268	Amare AT	2017-11-09	JAMA Psychiatry	Association of Polygenic Score for Schizophrenia and HLA Antigen and Inflammation Genes With Response to Lithium in Bipolar Affective Disorder: A Genome-Wide Association Study.	Bipolar disorder lithium response (continuous) or schizophrenia	2,366 European ancestry lithium treated bipolar disorder cases, 220 Asian ancestry lithium treated bipolar disorder cases, 36,989 schizophrenia cases, controls (see Ripke et al 2014 PMID:25056061)	NA	6p21.32	HLA, DMA	rs209474-A		2E-8				NR [NR] (imputed)	N
618	chr6_cox_hap2	4370228	4370229	rs580962	35215271	Almandil NB	2022-01-27	Pharmaceuticals (Basel)	Integration of Transcriptome and Exome Genotyping Identifies Significant Variants with Autism Spectrum Disorder.	Autism spectrum disorder	70 Arab ancestry cases, 132 Arab ancestry controls	NA	6p21.32	NA	rs580962-G	0.5852	6E-6		0.3383	[0.2105-0.5436]	Illumina [243345]	N
618	chr6_cox_hap2	4372846	4372847	rs209476	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.32		rs209476-G	0.683	9E-16				Affymetrix [10369434] (imputed)	N
618	chr6_cox_hap2	4373521	4373522	rs9276931	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	6p21.32	HLA-DMA	rs9276931-A	0.8852	5E-23		0.0292	[0.023-0.035] unit decrease	Affymetrix [18391927] (imputed)	N
618	chr6_cox_hap2	4379685	4379686	rs115249787	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.32	NR	rs115249787-A	0.01045	3E-9	(FHL1)	0.008308	NR unit increase	Illumina [1671387] (imputed)	N
618	chr6_cox_hap2	4379685	4379686	rs115249787	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.32	NR	rs115249787-A	0.01045	3E-10	(TAGLN)	0.4341	NR unit increase	Illumina [1671387] (imputed)	N
618	chr6_cox_hap2	4379685	4379686	rs115249787	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.32	NR	rs115249787-A	0.01045	2E-8	(CNN2)	0.01914	NR unit increase	Illumina [1671387] (imputed)	N
618	chr6_cox_hap2	4390069	4390070	rs3097644	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p21.32	BRD2	rs3097644-G		2E-8		0.02	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
618	chr6_cox_hap2	4390238	4390241	rs3918142	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p21.32	NR	rs3918142-?	NR	4E-7		0.117	[0.072-0.162] unit decrease	Illumina [at least 560000] (imputed)	N
618	chr6_cox_hap2	4390568	4390569	rs34530779	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.32	NR	rs34530779-A	0.01045	3E-9	(FHL1)	0.008308	NR unit increase	Illumina [1671387] (imputed)	N
618	chr6_cox_hap2	4390568	4390569	rs34530779	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.32	NR	rs34530779-A	0.01045	3E-10	(TAGLN)	0.4341	NR unit increase	Illumina [1671387] (imputed)	N
618	chr6_cox_hap2	4390568	4390569	rs34530779	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.32	NR	rs34530779-A	0.01045	2E-8	(CNN2)	0.01914	NR unit increase	Illumina [1671387] (imputed)	N
618	chr6_cox_hap2	4390861	4390862	rs76088152	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p21.32	NR	rs76088152-?	NR	8E-9		0.2377	[0.16-0.32] unit decrease	Illumina [at least 560000] (imputed)	N
618	chr6_cox_hap2	4393347	4393348	rs1049526	28008999	Ostrowski J	2016-12-23	Sci Rep	Genetic architecture differences between pediatric and adult-onset inflammatory bowel diseases in the Polish population.	Ulcerative colitis	269 Polish ancestry child cases, 259 Polish ancestry adult cases, 582 Polish ancestry controls	121 Polish ancestry child cases, 85 Polish ancestry adult cases, 352 Polish ancestry controls	6p21.32	BRD2	rs1049526-?		3E-7	(Adults)	2.697503	[1.87-3.90]	Illumina [2612357]	N
618	chr6_cox_hap2	4393347	4393348	rs1049526	28008999	Ostrowski J	2016-12-23	Sci Rep	Genetic architecture differences between pediatric and adult-onset inflammatory bowel diseases in the Polish population.	Ulcerative colitis	269 Polish ancestry child cases, 259 Polish ancestry adult cases, 582 Polish ancestry controls	121 Polish ancestry child cases, 85 Polish ancestry adult cases, 352 Polish ancestry controls	6p21.32	BRD2	rs1049526-?		2E-8		2.3810558	[1.74-3.26]	Illumina [2612357]	N
618	chr6_cox_hap2	4393347	4393348	rs1049526	28008999	Ostrowski J	2016-12-23	Sci Rep	Genetic architecture differences between pediatric and adult-onset inflammatory bowel diseases in the Polish population.	Inflammatory bowel disease	622 Polish ancestry child cases, 496 Polish ancestry adult cases, 582 Polish ancestry controls	192 Polish ancestry child cases, 185 Polish ancestry adult cases, 352 Polish ancestry controls	6p21.32	BRD2	rs1049526-?	NR	9E-10	(Adult)	2.659634	[1.93-3.66]	Illumina [2612357]	N
618	chr6_cox_hap2	4393347	4393348	rs1049526	28008999	Ostrowski J	2016-12-23	Sci Rep	Genetic architecture differences between pediatric and adult-onset inflammatory bowel diseases in the Polish population.	Inflammatory bowel disease	622 Polish ancestry child cases, 496 Polish ancestry adult cases, 582 Polish ancestry controls	192 Polish ancestry child cases, 185 Polish ancestry adult cases, 352 Polish ancestry controls	6p21.32	BRD2	rs1049526-?	NR	5E-11		2.434453	[1.83-3.24]	Illumina [2612357]	N
618	chr6_cox_hap2	4393347	4393348	rs1049526	28008999	Ostrowski J	2016-12-23	Sci Rep	Genetic architecture differences between pediatric and adult-onset inflammatory bowel diseases in the Polish population.	Inflammatory bowel disease	622 Polish ancestry child cases, 496 Polish ancestry adult cases, 582 Polish ancestry controls	192 Polish ancestry child cases, 185 Polish ancestry adult cases, 352 Polish ancestry controls	6p21.32	BRD2	rs1049526-?	NR	2E-8	(Children)	2.3504539	[1.73-3.19]	Illumina [2612357]	N
618	chr6_cox_hap2	4393347	4393348	rs1049526	28008999	Ostrowski J	2016-12-23	Sci Rep	Genetic architecture differences between pediatric and adult-onset inflammatory bowel diseases in the Polish population.	Crohn's disease	353 Polish ancestry child cases, 237 Polish ancestry adult cases, 582 Polish ancestry controls	71 Polish ancestry child cases, 100 Polish ancestry adult cases, 352 Polish ancestry controls	6p21.32	BRD2	rs1049526-?	NR	5E-9		2.4428785	[1.79-3.33]	Illumina [2612357]	N
618	chr6_cox_hap2	4393347	4393348	rs1049526	28008999	Ostrowski J	2016-12-23	Sci Rep	Genetic architecture differences between pediatric and adult-onset inflammatory bowel diseases in the Polish population.	Crohn's disease	353 Polish ancestry child cases, 237 Polish ancestry adult cases, 582 Polish ancestry controls	71 Polish ancestry child cases, 100 Polish ancestry adult cases, 352 Polish ancestry controls	6p21.32	BRD2	rs1049526-?	NR	3E-7	(Children)	2.4273632	[1.72-3.42]	Illumina [2612357]	N
618	chr6_cox_hap2	4393347	4393348	rs1049526	28008999	Ostrowski J	2016-12-23	Sci Rep	Genetic architecture differences between pediatric and adult-onset inflammatory bowel diseases in the Polish population.	Crohn's disease	353 Polish ancestry child cases, 237 Polish ancestry adult cases, 582 Polish ancestry controls	71 Polish ancestry child cases, 100 Polish ancestry adult cases, 352 Polish ancestry controls	6p21.32	BRD2	rs1049526-?	NR	3E-6	(Adults)	2.530363	[1.73-3.70]	Illumina [2612357]	N
618	chr6_cox_hap2	4397821	4397822	rs3097645	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	NR	rs3097645-C	0.87438328769575	7E-6	(IGP59)	0.2057	[0.12-0.3] unit increase	Illumina [~ 2500000] (imputed)	N
618	chr6_cox_hap2	4397821	4397822	rs3097645	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	NR	rs3097645-C	0.874270331235955	2E-6	(IGP42)	0.2151	[0.13-0.3] unit decrease	Illumina [~ 2500000] (imputed)	N
618	chr6_cox_hap2	4397821	4397822	rs3097645	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	NR	rs3097645-C	0.874157767431399	5E-6	(IGP2)	0.2092	[0.12-0.3] unit decrease	Illumina [~ 2500000] (imputed)	N
618	chr6_cox_hap2	4397821	4397822	rs3097645	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	NR	rs3097645-C	0.873857556055831	6E-6	(IGP16)	0.2057	[0.12-0.29] unit decrease	Illumina [~ 2500000] (imputed)	N
618	chr6_cox_hap2	4397821	4397822	rs3097645	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	NR	rs3097645-C	0.873550828800713	6E-6	(IGP61)	0.206	[0.12-0.3] unit increase	Illumina [~ 2500000] (imputed)	N
618	chr6_cox_hap2	4397821	4397822	rs3097645	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	NR	rs3097645-C	0.873514573726542	3E-6	(IGP58)	0.2131	[0.12-0.3] unit increase	Illumina [~ 2500000] (imputed)	N
618	chr6_cox_hap2	4397821	4397822	rs3097645	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	NR	rs3097645-C	0.872971129118433	6E-7	(IGP65)	0.2253	[0.14-0.31] unit increase	Illumina [~ 2500000] (imputed)	N
618	chr6_cox_hap2	4404552	4404553	rs3130600	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	6p21.32	NR	rs3130600-?	NR	2E-6		0.079	[0.046-0.112] unit increase	Illumina [at least 560000] (imputed)	N
618	chr6_cox_hap2	4405019	4405020	rs140545087	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	6p21.32	NR	rs140545087-?	NR	3E-10				Affymetrix [~ 8270000] (imputed)	N
618	chr6_cox_hap2	4405019	4405020	rs140545087	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs140545087-?	NR	5E-9				Affymetrix [~ 8270000] (imputed)	N
618	chr6_cox_hap2	4405886	4405887	rs9500927	21804548	Hirota T	2011-07-31	Nat Genet	Genome-wide association study identifies three new susceptibility loci for adult asthma in the Japanese population.	Asthma	1,532 Japanese ancestry cases, 3,304 Japanese ancestry controls	5,639 Japanese ancestry cases, 24,608 Japanese ancestry controls	6p21.32	HLA-DOA	rs9500927-T	0.26	4E-9		1.13	[1.09-1.18]	Illumina [458847]	N
618	chr6_cox_hap2	4406146	4406147	rs172275	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	334,944 European ancestry, NR ancestry individuals	NA	6p21.32		rs172275-?	NR	5E-8				Affymetrix [NR] (imputed)	N
618	chr6_cox_hap2	4407408	4407409	rs11757367	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.32		rs11757367-G	0.832	3E-15				Affymetrix [10369434] (imputed)	N
618	chr6_cox_hap2	4411226	4411227	rs35520555	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.32		rs35520555-A	0.886	3E-8				Affymetrix [10369434] (imputed)	N
618	chr6_cox_hap2	4416900	4416901	rs3128935	24024966	Teumer A	2013-08-14	J Clin Periodontol	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (CDC/AAP)	up to 3,915 European ancestry individuals	NA	6p21.32	HLA-DOA	rs3128935-T	0.97	9E-6	(Age 20-60 years)	2.28	[1.59-3.28]	Affymetrix, Illumina [up to 17585496] (imputed)	N
618	chr6_cox_hap2	4418095	4418096	rs9276975	25758996	Pirastu N	2015-03-11	Eur J Hum Genet	Genome-wide association analysis on five isolated populations identifies variants of the HLA-DOA gene associated with white wine liking.	White wine liking	381 Carlantino (founder/genetic isolated) individuals, 744 Friuli Venezia Giulia (founder/genetic isolated) individuals, 1,115 Val Borbera (founder/genetic isolated) individuals	1,261 Erasmus Rucphen (founder/genetic isolated) individuals, 335 Silk Road individuals	6p21.32	HLA-DOA	rs9276975-T	0.15	2E-8		0.0539	[NR] unit increase	Illumina [9969492] (imputed)	N
618	chr6_cox_hap2	4418095	4418096	rs9276975	25758996	Pirastu N	2015-03-11	Eur J Hum Genet	Genome-wide association analysis on five isolated populations identifies variants of the HLA-DOA gene associated with white wine liking.	Red wine liking	398 Carlantino (founder/genetic isolated) individuals, 751 Friuli Venezia Giulia (founder/genetic isolated) individuals, 1,122 Val Borbera (founder/genetic isolated) individuals	1,246 Erasmus Rucphen (founder/genetic isolated) individuals, 353 Silk Road individuals	6p21.32	HLA-DOA	rs9276975-T	0.15	8E-6		0.0419	[NR] unit increase	Illumina [6967159] (imputed)	N
618	chr6_cox_hap2	4419430	4419431	rs378352	25802187	Jiang DK	2015-04-28	Hepatology	Genetic variants in five novel loci including CFB and CD40 predispose to chronic hepatitis B.	Chronic hepatitis B infection	2,514 Chinese ancestry cases, 1,130 Chinese ancestry controls	6,600 Chinese ancestry cases, 8,127 Chinese ancestry controls	6p21.32	HLA-DOA	rs378352-T	0.39	1E-23		1.26	[1.20-1.31]	Illumina [3680900] (imputed)	N
618	chr6_cox_hap2	4419510	4419511	rs399604	22139419	Gieger C	2011-11-30	Nature	New gene functions in megakaryopoiesis and platelet formation.	Platelet count	38,891 European ancestry individuals, 1,661 Val Borbera (founder/genetic isolate) individuals, 521 Carlantino (founder/genetic isolate) individuals, 1,198 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,213 South Tyrolean (founder/genetic isolate) individuals, 890 Sorbian (founder/genetic isolate) individuals, 4,292 Sardinian (founder/genetic isolate) individuals	Up to 16,949 European ancestry individuals, 854 Cliento (founder/genetic isolate) individuals, 1,035 Talana (founder/genetic isolate) individuals	6p21.32	HLA-DOA	rs399604-C	NR	1E-10		2.346	[1.63-3.06] 10^9/l increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
618	chr6_cox_hap2	4420007	4420008	rs2267647	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.32		rs2267647-A	0.331	4E-13				Affymetrix [10369434] (imputed)	N
618	chr6_cox_hap2	4421916	4421917	rs381218	32534018	Liu X	2020-06-10	Brain Behav Immun	Genetic factors underlying the bidirectional relationship between autoimmune and mental disorders - findings from a Danish population-based study.	Autoimmune traits	1,383 Danish ancestry cases, 62,656 Danish ancestry controls	NA	6p21.32	NR	rs381218-T	0.29	1E-10		1.31	[1.21-1.42]	NR [7721839] (imputed)	N
618	chr6_cox_hap2	4428245	4428246	rs11964504	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	6p21.32	NR	rs11964504-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
618	chr6_cox_hap2	4433199	4433200	rs9296068	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	6p21.32	HLA-DOA	rs9296068-T	0.65	1E-8		1.05	[1.03-1.07]	Illumina [20370935] (imputed)	N
618	chr6_cox_hap2	4434025	4434026	rs56042736	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	133,321 East Asian ancestry individuals	NA	6p21.32		rs56042736-G	0.049558	3E-17		0.0728205	[0.056-0.09] unit decrease	Illumina [13477433] (imputed)	N
618	chr6_cox_hap2	4449938	4449939	rs150480104	32141793	Garman L	2020-03-06	Ocul Immunol Inflamm	Genome-Wide Association Study of Ocular Sarcoidosis Confirms HLA Associations and Implicates Barrier Function and Autoimmunity in African Americans.	Ocular sarcoidosis	260 African American cases, 1,551 African American controls	NA	6p21.32	NR	rs150480104-A	NR	8E-6		3.855	[2.13-6.98]	Illumina [13976150] (imputed)	N
618	chr6_cox_hap2	4453819	4453820	rs78331658	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Measles	38,219 European ancestry cases, 47,279 European ancestry controls	NA	6p21.32	NR	rs78331658-?	NR	1E-7		1.7845	[1.12-2.45] unit increase	Illumina [at least 560000] (imputed)	N
619	chr6_cox_hap2	4463396	4463397	rs9296069	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.32		rs9296069-C	0.749	5E-33				Affymetrix [10369434] (imputed)	N
619	chr6_cox_hap2	4464791	4464792	rs3130582	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p21.32	HLA-DPA1	rs3130582-T	0.202102	3E-8	(-24 ms)	0.0369729	[0.023-0.051] unit increase	Affymetrix [10000000] (imputed)	N
619	chr6_cox_hap2	4467589	4467590	rs9277176	29534301	Nishida N	2018-03-13	Hepatology	Key HLA-DRB1-DQB1 haplotypes and role of the BTNL2 gene for response to a hepatitis B vaccine.	Response to hepatitis B vaccine	107 Japanese ancestry low responder individuals, 351 Japanese ancestry intermediate responder individuals, 735 Japanese ancestry high responder individuals	NA	6p21.32	HLA-DPA1	rs9277176-?		1E-7		0.219	unit decrease	Affymetrix [427664]	N
619	chr6_cox_hap2	4470393	4470394	rs6457709	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6p21.32		rs6457709-?	NR	2E-6		0.94528	[0.92-0.97]	NR [685523]	N
619	chr6_cox_hap2	4470393	4470394	rs6457709	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Hepatitis B	1,425 European ancestry cases, 218,180 European ancestry controls	NA	6p21.32	NR	rs6457709-?	NR	8E-6		0.1819	[0.1-0.26] unit increase	Illumina [at least 560000] (imputed)	N
619	chr6_cox_hap2	4470550	4470551	rs422544	32771030	Tangtanatakul P	2020-08-08	Arthritis Res Ther	Meta-analysis of genome-wide association study identifies FBN2 as a novel locus associated with systemic lupus erythematosus in Thai population.	Systemic lupus erythematosus	487 Thai cases, 1,606 Thai controls	405 Thai cases, 1,590 Thai controls	6p21.32	HLA-DOA, HLA-DPA1	rs422544-C	0.15	5E-8		0.6232	[NR]	Illumina [421909] (imputed)	N
619	chr6_cox_hap2	4472867	4472868	rs9277332	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Keratinocyte cancer (MTAG)	at least 18,538 European ancestry cases, at least 340,302 European ancestry controls	NA	6p21.32	HLA-DPA1	rs9277332-G	0.744531	2E-9		1.06	[1.04-1.08]	Affymetrix [7600000] (imputed)	N
619	chr6_cox_hap2	4472946	4472947	rs588997	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	6p21.32	NR	rs588997-A	NR	4E-6	(female)	0.1185	[0.068-0.169] unit decrease	Illumina [11133794] (imputed)	N
619	chr6_cox_hap2	4473616	4473617	rs6457710	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	6p21.32	HLA-DPA1	rs6457710-G	0.268971	2E-11		0.017609773	[0.012-0.023] unit increase	Affymetrix [93095623] (imputed)	N
619	chr6_cox_hap2	4475791	4475792	rs35449774	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.32	NR	rs35449774-?	NR	3E-11				Affymetrix [~ 8270000] (imputed)	N
619	chr6_cox_hap2	4475791	4475792	rs35449774	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs35449774-?	NR	2E-16				Affymetrix [~ 8270000] (imputed)	N
619	chr6_cox_hap2	4475791	4475792	rs35449774	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	6p21.32	HLA-DPA1, HLA-DPB1, HLA-DPB2	rs35449774-T	0.142188	7E-11		1.0714098	[1.05-1.09]	Affymetrix [8274727] (imputed)	N
619	chr6_cox_hap2	4477044	4477045	rs1042901	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	6p21.32	HLA-DPA1	rs1042901-C	0.119144	1E-14		0.029356208	[0.022-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
619	chr6_cox_hap2	4477201	4477202	rs3077	33736632	Zeng Z	2021-03-18	BMC Med Genomics	Genome-wide association study identifies new loci associated with risk of HBV infection and disease progression.	Persistent hepatitis B virus infection	587 Chinese ancestry persistent cases, 275 Chinese ancestry clearance controls	NA	6p21.32	HLA-DPA1	rs3077-A	0.4145	7E-9		0.5007	NR	Affymetrix [607153]	N
619	chr6_cox_hap2	4477201	4477202	rs3077	25802187	Jiang DK	2015-04-28	Hepatology	Genetic variants in five novel loci including CFB and CD40 predispose to chronic hepatitis B.	Chronic hepatitis B infection	2,514 Chinese ancestry cases, 1,130 Chinese ancestry controls	6,600 Chinese ancestry cases, 8,127 Chinese ancestry controls	6p21.32	HLA-DPA1	rs3077-A	0.66	1E-53		1.45	[1.39-1.52]	Illumina [3680900] (imputed)	N
619	chr6_cox_hap2	4477201	4477202	rs3077	23760081	Kim YJ	2013-06-10	Hum Mol Genet	A genome-wide association study identified new variants associated with the risk of chronic hepatitis B.	Chronic hepatitis B infection	400 Korean ancestry cases, 1,000 Korean ancestry controls	971 Korean ancestry cases, 1,938 Korean ancestry controls	6p21.32	HLA-DP	rs3077-?	NR	5E-39		1.89	[1.69-2.08]	Illumina [719265]	N
619	chr6_cox_hap2	4477201	4477202	rs3077	22737229	Nishida N	2012-06-21	PLoS One	Genome-wide association study confirming association of HLA-DP with protection against chronic hepatitis B and viral clearance in Japanese and Korean.	Hepatitis B (viral clearance)	181 East Asian ancestry HBV carriers, 184 East Asian ancestry controls, 185 East Asian ancestry spontaneously HBV-resolved individuals	Up to 8,045 East Asian ancestry HBV carriers, up to 9,003 East Asian ancestry controls, up to 3,995 East Asian ancestry spontaneously HBV-resolved individuals	6p21.32	HLA-DPA1	rs3077-C	0.60	4E-45	(Protective effects against CHB)	1.82	[1.67-1.96]	Affymetrix [597789]	N
619	chr6_cox_hap2	4477201	4477202	rs3077	22737229	Nishida N	2012-06-21	PLoS One	Genome-wide association study confirming association of HLA-DP with protection against chronic hepatitis B and viral clearance in Japanese and Korean.	Hepatitis B (viral clearance)	181 East Asian ancestry HBV carriers, 184 East Asian ancestry controls, 185 East Asian ancestry spontaneously HBV-resolved individuals	Up to 8,045 East Asian ancestry HBV carriers, up to 9,003 East Asian ancestry controls, up to 3,995 East Asian ancestry spontaneously HBV-resolved individuals	6p21.32	HLA-DPA1	rs3077-C	0.60	1E-9	(Clearance of HBV)	1.67	[1.43-2.0]	Affymetrix [597789]	N
619	chr6_cox_hap2	4477201	4477202	rs3077	21750111	Mbarek H	2011-07-12	Hum Mol Genet	A genome-wide association study of chronic hepatitis B identified novel risk locus in a Japanese population.	Hepatitis B	458 Japanese ancestry cases, 2,056 Japanese ancestry controls	2,209 Japanese ancestry cases, 4,440 Japanese ancestry controls	6p21.32	HLA-DPA1	rs3077-G	0.60	2E-61		1.87	[1.73-2.01]	Illumina [423627]	N
619	chr6_cox_hap2	4477599	4477600	rs79341334	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	6p21.32	NR	rs79341334-?	NR	4E-9	(MIC-A)	1.11932	[0.75-1.49] unit increase	Illumina [11901634] (imputed)	N
619	chr6_cox_hap2	4477889	4477890	rs73739621	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (multivariate analysis)	477,968 European ancestry individuals	NA	6p21.32	HLA, DPA1	rs73739621-C	0.096	2E-10		0.05	[0.034-0.066] unit decrease	NR [NR] (imputed)	N
619	chr6_cox_hap2	4477889	4477890	rs73739621	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (age of onset)	117,130 European ancestry individuals	NA	6p21.32	HLA-DPA1	rs73739621-C	0.096	4E-11		0.051	[0.035-0.067] unit decrease	NR [7647814] (imputed)	N
619	chr6_cox_hap2	4477993	4477994	rs2301227	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	6p21.32	NR	rs2301227-A	NR	5E-6	(female)	0.1072	[0.061-0.153] unit decrease	Illumina [11133794] (imputed)	N
619	chr6_cox_hap2	4478003	4478004	rs111789468	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	6p21.32	HLA-DPA1	rs111789468-?	NR	2E-13		1.092	[1.07-1.12]	Affymetrix [9000000] (imputed)	N
619	chr6_cox_hap2	4478003	4478004	rs111789468	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	6p21.32	HLA-DPA1	rs111789468-T	NR	4E-6		1.082	[1.05-1.12]	Affymetrix [9000000] (imputed)	N
619	chr6_cox_hap2	4478756	4478757	rs34596699	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	Systemic lupus erythematosus	1,639 East Asian ancestry cases, 2,410 East Asian ancestry controls	NA			rs34596699-T	NR	2E-8		0.2177	[0.14-0.29] unit increase	Illumina [NR] (imputed)	N
619	chr6_cox_hap2	4479494	4479495	rs74292032	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6p21.32	HLA-DPA1	rs74292032-G	0.014974	1E-15		0.07435001	[0.056-0.093] unit decrease	Affymetrix [93095623] (imputed)	N
619	chr6_cox_hap2	4483804	4483805	rs9277341	28029757	Merkel PA	2016-12-28	Arthritis Rheumatol	Identification of Functional and Expression Polymorphisms Associated With Risk for Antineutrophil Cytoplasmic Autoantibody-Associated Vasculitis.	Antineutrophil cytoplasmic antibody-associated vasculitis	1,015 European ancestry granulomatosis with polyangiitis cases, 206 European ancestry microscopic polyangiitis cases, 3,258 European ancestry controls.	541 European ancestry granulomatosis with polyangiitis cases, 30 European ancestry microscopic polyangiitis cases, 1,465 European ancestry controls.	6p21.32	HLA-DPA1	rs9277341-T	0.70	6E-71		2.44	2.21-2.69	Affymetrix [at least 333035] (imputed)	N
619	chr6_cox_hap2	4483983	4483984	rs9277342	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	6p21.32	HLA-DPA1	rs9277342-T	0.21017	8E-10		0.017251292	[0.012-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
619	chr6_cox_hap2	4484277	4484278	rs4345439	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Graves' disease	2,809 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	6p21.32		rs4345439-T	0.47048229	2E-67		0.48648387	[0.43-0.54] unit increase	Illumina [13429311] (imputed)	N
619	chr6_cox_hap2	4485252	4485253	rs9357156	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Graves' disease	1,678 European ancestry cases, 456,942 European ancestry controls, 2,809 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	6p21.32		rs9357156-C	NR	1E-68		0.4396	[0.39-0.49] unit increase	Affymetrix, Illumina [25841587] (imputed)	N
619	chr6_cox_hap2	4485913	4485914	rs2856830	30527956	Rhodes CJ	2018-12-05	Lancet Respir Med	Genetic determinants of risk in pulmonary arterial hypertension: international genome-wide association studies and meta-analysis.	Pulmonary arterial hypertension	2,085 European ancestry cases, 9,659 European ancestry controls	NA	6p21.32	HLA-DPA1, HLA-DPB1	rs2856830-C	0.12	8E-20		1.56	[1.42-1.71]	Illumina [~ 7727590] (imputed)	N
619	chr6_cox_hap2	4487059	4487060	rs987870	21814517	Noguchi E	2011-07-21	PLoS Genet	Genome-wide association study identifies HLA-DP as a susceptibility gene for pediatric asthma in Asian populations.	Asthma	938 Japanese ancestry cases, 2,376 Japanese ancestry controls	1653 East Asian ancestry cases, 1453 East Asian ancestry controls	6p21.32	HLA, DPB1	rs987870-C	0.14	2E-10		1.4	[1.26-1.55]	Illumina [450326]	N
619	chr6_cox_hap2	4487059	4487060	rs987870	21779181	Gorlova O	2011-07-14	PLoS Genet	Identification of novel genetic markers associated with clinical phenotypes of systemic sclerosis through a genome-wide association strategy.	Systemic sclerosis	2,296 European ancestry cases, 5,172 European ancestry controls	3,175 European ancestry cases, 4,210 European ancestry controls	6p21.32	HLA-DPA1, HLA-DPB1	rs987870-?	0.15	2E-20	(ATA positive)	2.09	[1.78-2.45]	Illumina [NR] (imputed)	N
619	chr6_cox_hap2	4488194	4488195	rs115910061	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs115910061-T	0.059	5E-12		0.721	[0.63-0.81]	Illumina [11270530] (imputed)	N
619	chr6_cox_hap2	4489166	4489167	rs6415133	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p21.32	NR	rs6415133-?	NR	6E-16		0.0994	[0.075-0.124] unit decrease	Illumina [at least 560000] (imputed)	N
619	chr6_cox_hap2	4489434	4489435	rs2213309	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	6p21.32	NR	rs2213309-T	0.55	8E-7	(female)	0.1155	[0.07-0.161] unit increase	Illumina [11133794] (imputed)	N
619	chr6_cox_hap2	4489679	4489680	rs2856816	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.32		rs2856816-T	0.908	5E-23				Affymetrix [10369434] (imputed)	N
619	chr6_cox_hap2	4489679	4489680	rs2856816	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	6p21.32	HLA-DPB1, HLA-DPA1	rs2856816-C	0.092	2E-17		0.0523189	[0.04-0.064] unit decrease	Affymetrix [~ 2500000] (imputed)	N
619	chr6_cox_hap2	4489679	4489680	rs2856816	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	6p21.32	HLA-DPB1, HLA-DPA1	rs2856816-C	0.092	7E-15		0.04810228	[0.036-0.06] unit decrease	Affymetrix [~ 2500000] (imputed)	N
619	chr6_cox_hap2	4489877	4489878	rs7750458	27153935	Zhang CE	2016-05-06	J Dermatol	Variation at HLA-DPB1 is associated with dermatomyositis in Chinese population.	Dermatomyositis	127 Han Chinese ancestry case, 1,566 Han Chinese ancestry controls	NA	6p21.32	HLA-DPB1, HLA-DMB	rs7750458-A	0.09	1E-9		2.5	[1.80-3.44]	Illumina [812602]	N
619	chr6_cox_hap2	4489878	4489879	rs56934772	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	6p21.32	HLA-DPB1	rs56934772-T	NR	5E-8		0.259632	[0.17-0.35] unit increase	Illumina [at least 950000] (imputed)	N
619	chr6_cox_hap2	4490145	4490146	rs3135022	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	6p21.32	NR	rs3135022-A	NR	3E-6	(female)	0.1098	[0.064-0.156] unit decrease	Illumina [11133794] (imputed)	N
619	chr6_cox_hap2	4490904	4490905	rs2021408	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.32		rs2021408-T	0.833	1E-17				Affymetrix [10369434] (imputed)	N
619	chr6_cox_hap2	4490904	4490905	rs2021408	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.32		rs2021408-C	0.840557	3E-7		1.0296161	[1.02-1.04]	Affymetrix, Illumina [9851866] (imputed)	N
619	chr6_cox_hap2	4490920	4490921	rs2856821	34450027	Boer CG	2021-08-24	Cell	Deciphering osteoarthritis genetics across 826,690 individuals from 9 populations.	Osteoarthritis of the hip or knee	88,842 European ancestry cases, 397,208 European ancestry controls, 899 Japanese ancestry cases, 3,396 Japanese ancestry controls	NA	6p21.32		rs2856821-T	0.7896	6E-9		1.0471791	[1.031089783-1.063519526]	Affymetrix, Illumina [NR] (imputed)	N
619	chr6_cox_hap2	4490920	4490921	rs2856821	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Osteoarthritis	77,052 European ancestry cases, 378,169 European ancestry controls	NA	6p21.32	NR	rs2856821-T	0.79	1E-9		1.04	[1.03-1.06]	Affymetrix, Illumina [up to 17000000] (imputed)	N
619	chr6_cox_hap2	4490930	4490931	rs3097670	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	6p21.32	HLA-DPA1	rs3097670-G	0.88	8E-12		1.064	[1.05-1.08]	Affymetrix, Illumina [8307659] (imputed)	N
619	chr6_cox_hap2	4491209	4491210	rs1431403	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs1431403-T	0.39	1E-22		0.848	[0.81-0.88]	Illumina [11270530] (imputed)	N
619	chr6_cox_hap2	4491644	4491645	rs3135024	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Aspartate aminotransferase levels	386,570 British ancestry individuals, 10,617 Asian or Asian British individuals, 7,426 Black or Black British individuals, 2,321 Chinese ancestry individuals	NA	6p21.32	HLA-DPB1	rs3135024-?	NR	8E-24		0.0034	[0.0028-0.004] unit increase	Affymetrix [21347608] (imputed)	N
619	chr6_cox_hap2	4491644	4491645	rs3135024	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Alanine aminotransferase levels	387,859 British ancestry individuals, 10,635 Asian or Asian British individuals, 7,468 Black or Black British individuals, 2,338 Chinese ancestry individuals	NA	6p21.32	HLA-DPB1	rs3135024-?	NR	3E-10		0.0034	[0.0024-0.0044] unit increase	Affymetrix [21347608] (imputed)	N
619	chr6_cox_hap2	4491644	4491645	rs3135024	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DPA1, HLA-DPB1, RPL32P1	rs3135024-C	NR	2E-8		0.0184048	[0.012-0.025] unit decrease	Affymetrix [321016] (imputed)	N
619	chr6_cox_hap2	4491790	4491791	rs3097671	34197731	Li Q	2021-06-23	Am J Hum Genet	Whole-exome sequencing reveals common and rare variants in immunologic and neurological genes implicated in achalasia.	Idiopathic achalasia	280 Chinese Han ancestry cases, 1,121 Chinese Han ancestry controls	NA	6p21.32		rs3097671-C	0.102	3E-7		2.29	[1.67-3.15]	Illumina [476650] (imputed)	N
619	chr6_cox_hap2	4492280	4492281	rs3130169	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs3130169-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
619	chr6_cox_hap2	4492638	4492639	rs12722013	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	HLA-DPB1	rs12722013-C	0.049	1E-15	(C-C motif chemokine 21, CCL21.2516.57.3)	0.45	[0.33-0.57] unit increase	Affymetrix [10572788] (imputed)	N
619	chr6_cox_hap2	4492644	4492645	rs1126511	34197731	Li Q	2021-06-23	Am J Hum Genet	Whole-exome sequencing reveals common and rare variants in immunologic and neurological genes implicated in achalasia.	Idiopathic achalasia	100 Chinese Han ancestry cases, 313 Chinese Han ancestry controls	230 Chinese Han ancestry cases, 1,760 Chinese Han ancestry controls	6p21.32		rs1126511-T	0.181	2E-9		1.83		Illumina [192329]	N
619	chr6_cox_hap2	4492716	4492717	rs9277348	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hypothyroidism	1,114 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	6p21.32		rs9277348-C	0.428105722	8E-16		0.3692923	[0.28-0.46] unit increase	Illumina [13429045] (imputed)	N
619	chr6_cox_hap2	4492784	4492785	rs1042133	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	6p21.32	HLA-DPB1	rs1042133-C	0.15836	8E-32		0.036145743	[0.03-0.042] unit increase	Affymetrix [93095623] (imputed)	N
619	chr6_cox_hap2	4492784	4492785	rs1042133	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	6p21.32	HLA-DPB1	rs1042133-C	0.1567	3E-12		0.03465061	[0.025-0.044] unit increase	Affymetrix [~ 2500000] (imputed)	N
619	chr6_cox_hap2	4492839	4492840	rs1042151	32004448	Savage SA	2020-01-30	Am J Hum Genet	Genome-wide Association Study Identifies HLA-DPB1 as a Significant Risk Factor for Severe Aplastic Anemia.	Severe aplastic anemia	359 European ancestry cases, 1,396 European ancestry controls	175 European ancestry cases, 1,059 European ancestry controls	6p21.32	HLA-DPB1	rs1042151-?	NR	2E-13		1.75	[1.50-2.03]	Illumina [688067]	N
619	chr6_cox_hap2	4492839	4492840	rs1042151	23180272	Park BL	2012-11-21	Hum Genet	Genome-wide association study of aspirin-exacerbated respiratory disease in a Korean population.	Aspirin exacerbated respiratory disease in asthmatics	117 Korean ancestry cases, 685 Korean ancestry controls	142 Korean ancestry cases, 996 Korean ancestry controls	6p21.32	HLA-DPB1	rs1042151-G	0.083	5E-7		2.4	[1.68-3.42]	Illumina [430486]	N
619	chr6_cox_hap2	4493099	4493100	rs7770370	32573827	Huang YH	2020-06-23	Aliment Pharmacol Ther	Large-scale genome-wide association study identifies HLA class II variants associated with chronic HBV infection: a study from Taiwan Biobank.	Chronic hepatitis B infection	1,810 East Asian cases, 9,002 East Asian seropositive controls	648 East Asian cases, 3,190 East Asian seropositive controls	6p21.32	NR	rs7770370-G	0.5739	3E-35		1.6393442	[1.52-1.79]	Affymetrix [583383]	N
619	chr6_cox_hap2	4493452	4493453	rs2856827	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip	15 Asian ancestry cases, 13 European ancestry cases, 15 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	6p21.32	NR	rs2856827-?	NR	4E-6		3.87	[2.88-5.2]	Illumina [539000] (imputed)	N
619	chr6_cox_hap2	4493841	4493842	rs9501251	28425483	Qiu F	2017-04-20	Nat Commun	A genome-wide association study identifies six novel risk loci for primary biliary cholangitis.	Primary biliary cholangitis	1,122 Han Chinese ancestry cases, 4,036 Han Chinese ancestry controls	907 Han Chinese ancestry cases, 2,127 Han Chinese ancestry controls	6p21.32	HLA-DPB1	rs9501251-G	0.044	2E-22		2.01	[1.76-2.32]	Illumina [776516]	N
619	chr6_cox_hap2	4493904	4493905	rs7772134	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.32		rs7772134-G	0.899	5E-45				Affymetrix [10369434] (imputed)	N
619	chr6_cox_hap2	4494457	4494458	rs9277378	27595289	Goyal RK	2016-09-05	Bone Marrow Transplant	Novel HLA-DP region susceptibility loci associated with severe acute GvHD.	Acute graft versus host disease in bone marrow transplantation (recipient effect)	291 European ancestry recipients with acute graft versus host disease, 288 European ancestry recipients without acute graft versus host disease	NA	6p21.32	HLA-DPB1	rs9277378-?		2E-9				Affymetrix [905761]	N
619	chr6_cox_hap2	4494457	4494458	rs9277378	27470079	Li Z	2016-07-25	Lancet Oncol	Genetic risk of extranodal natural killer T-cell lymphoma: a genome-wide association study.	Extranodal natural killer T-cell lymphoma (nasal type)	189 East Asian ancestry cases, 957 East Asian ancestry controls	514 East Asian ancestry cases, 5,822 East Asian ancestry controls	6p21.32	HLA-DPB1	rs9277378-A	0.29	4E-19		1.84	[1.61-2.11]	Illumina [477644] (imputed)	N
619	chr6_cox_hap2	4496066	4496066	rs142975055	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic hepatitis B infection	145 European ancestry cases, 351,740 European ancestry controls, 2,234 East Asian ancestry cases, 169,588 East Asian ancestry controls	NA	6p21.32		rs142975055-GAAATA	NR	1E-44		0.4385	[0.38-0.5] unit increase	Affymetrix, Illumina [20457334] (imputed)	N
619	chr6_cox_hap2	4497466	4497467	rs9277464	29534301	Nishida N	2018-03-13	Hepatology	Key HLA-DRB1-DQB1 haplotypes and role of the BTNL2 gene for response to a hepatitis B vaccine.	Response to hepatitis B vaccine	107 Japanese ancestry low responder individuals, 351 Japanese ancestry intermediate responder individuals, 735 Japanese ancestry high responder individuals	NA	6p21.32	HLA-DPB1	rs9277464-?		7E-11		0.175	unit decrease	Affymetrix [427664]	N
619	chr6_cox_hap2	4498975	4498976	rs9277535	27244555	Li Y	2016-05-31	Nat Commun	Genome-wide association study identifies 8p21.3 associated with persistent hepatitis B virus infection among Chinese.	Persistent hepatitis B virus infection	1,251 Chinese ancestry persistently infected cases, 1,057 Chinese ancestry spontaneously recovered controls	3,905 Chinese ancestry persistently infected cases, 3,356 Chinese ancestry spontaneously recovered controls	6p21.32	HLA-DPB1	rs9277535-A		4E-6		1.45	[1.23-1.69]	Affymetrix, Illumina [up to 4494311] (imputed)	N
619	chr6_cox_hap2	4498975	4498976	rs9277535	25802187	Jiang DK	2015-04-28	Hepatology	Genetic variants in five novel loci including CFB and CD40 predispose to chronic hepatitis B.	Chronic hepatitis B infection	2,514 Chinese ancestry cases, 1,130 Chinese ancestry controls	6,600 Chinese ancestry cases, 8,127 Chinese ancestry controls	6p21.32	HLA-DPB1	rs9277535-A	0.58	1E-70		1.52	[1.45-1.59]	Illumina [3680900] (imputed)	N
619	chr6_cox_hap2	4498975	4498976	rs9277535	24940741	Chang SW	2014-06-18	PLoS One	A genome-wide association study on chronic HBV infection and its clinical progression in male Han-Taiwanese.	Chronic hepatitis B infection	321 Chinese ancestry cases, 304 Chinese ancestry controls	1,302 Chinese ancestry cases, 761 Chinese ancestry controls	6p21.32	HLA-DPB1	rs9277535-G	0.251	5E-14		1.59	[1.41-1.79]	Illumina [456262]	N
619	chr6_cox_hap2	4498975	4498976	rs9277535	23760081	Kim YJ	2013-06-10	Hum Mol Genet	A genome-wide association study identified new variants associated with the risk of chronic hepatitis B.	Chronic hepatitis B infection	400 Korean ancestry cases, 1,000 Korean ancestry controls	971 Korean ancestry cases, 1,938 Korean ancestry controls	6p21.32	HLA-DP	rs9277535-?	NR	4E-40		1.89	[1.72-2.08]	Illumina [719265]	N
619	chr6_cox_hap2	4498975	4498976	rs9277535	22737229	Nishida N	2012-06-21	PLoS One	Genome-wide association study confirming association of HLA-DP with protection against chronic hepatitis B and viral clearance in Japanese and Korean.	Hepatitis B (viral clearance)	181 East Asian ancestry HBV carriers, 184 East Asian ancestry controls, 185 East Asian ancestry spontaneously HBV-resolved individuals	Up to 8,045 East Asian ancestry HBV carriers, up to 9,003 East Asian ancestry controls, up to 3,995 East Asian ancestry spontaneously HBV-resolved individuals	6p21.32	HLA-DPB1	rs9277535-G	0.57	2E-21	(Protective effects against CHB)	1.64	[1.47-1.82]	Affymetrix [597789]	N
619	chr6_cox_hap2	4498975	4498976	rs9277535	22737229	Nishida N	2012-06-21	PLoS One	Genome-wide association study confirming association of HLA-DP with protection against chronic hepatitis B and viral clearance in Japanese and Korean.	Hepatitis B (viral clearance)	181 East Asian ancestry HBV carriers, 184 East Asian ancestry controls, 185 East Asian ancestry spontaneously HBV-resolved individuals	Up to 8,045 East Asian ancestry HBV carriers, up to 9,003 East Asian ancestry controls, up to 3,995 East Asian ancestry spontaneously HBV-resolved individuals	6p21.32	HLA-DPB1	rs9277535-G	0.57	2E-17	(Clearance of HBV)	1.52	[1.37-1.67]	Affymetrix [597789]	N
619	chr6_cox_hap2	4498975	4498976	rs9277535	21764829	Png E	2011-07-15	Hum Mol Genet	A genome-wide association study of hepatitis B vaccine response in an Indonesian population reveals multiple independent risk variants in the HLA region.	Hepatitis B vaccine response	1,683 Indonesian ancestry individuals	1,931 Indonesian ancestry individuals	6p21.32	HLA-DPB1	rs9277535-?	NR	3E-12		1.39	[1.23-1.59]	Illumina [455508]	N
619	chr6_cox_hap2	4498975	4498976	rs9277535	21750111	Mbarek H	2011-07-12	Hum Mol Genet	A genome-wide association study of chronic hepatitis B identified novel risk locus in a Japanese population.	Hepatitis B	458 Japanese ancestry cases, 2,056 Japanese ancestry controls	2,209 Japanese ancestry cases, 4,440 Japanese ancestry controls	6p21.32	HLA-DPB1	rs9277535-G	0.57	3E-54		1.77	[1.65-1.91]	Illumina [423627]	N
619	chr6_cox_hap2	4498975	4498976	rs9277535	19349983	Kamatani Y	2009-04-06	Nat Genet	A genome-wide association study identifies variants in the HLA-DP locus associated with chronic hepatitis B in Asians.	Hepatitis B	179 Japanese ancestry cases, 934 Japanese ancestry controls	1,599 Japanese ancestry cases, 2,821 Japanese ancestry controls, 308 Thai ancestry cases, 546 Thai ancestry controls	6p21.32	HLA-DPB1	rs9277535-G		6E-39		1.75	[1.61-1.92]	Illumina [499544]	N
619	chr6_cox_hap2	4499212	4499213	rs9501255	28077804	Ben-Avraham D	2017-01-10	Aging (Albany NY)	The complex genetics of gait speed: genome-wide meta-analysis approach.	Gait speed in old age	31,478 European ancestry older adults	2,588 European ancestry older adults	6p21.32	HLA-DPB1	rs9501255-T	NR	3E-7		0.0244	[0.015-0.034] m/sec increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
619	chr6_cox_hap2	4499360	4499361	rs9277542	33736632	Zeng Z	2021-03-18	BMC Med Genomics	Genome-wide association study identifies new loci associated with risk of HBV infection and disease progression.	Persistent hepatitis B virus infection	587 Chinese ancestry persistent cases, 275 Chinese ancestry clearance controls	NA	6p21.32	HLA-DPB1	rs9277542-T	0.5347	2E-8		0.5353	NR	Affymetrix [607153]	N
619	chr6_cox_hap2	4499360	4499361	rs9277542	33736632	Zeng Z	2021-03-18	BMC Med Genomics	Genome-wide association study identifies new loci associated with risk of HBV infection and disease progression.	Hepatitis B	460 Chinese ancestry cases, 169 Chinese ancestry controls	NA	6p21.32	HLA-DPB1	rs9277542-?	NR	2E-9				Affymetrix [607153]	N
619	chr6_cox_hap2	4499529	4499530	rs9277549	29534301	Nishida N	2018-03-13	Hepatology	Key HLA-DRB1-DQB1 haplotypes and role of the BTNL2 gene for response to a hepatitis B vaccine.	Response to hepatitis B vaccine	107 Japanese ancestry low responder individuals, 351 Japanese ancestry intermediate responder individuals, 735 Japanese ancestry high responder individuals	NA	6p21.32	HLA-DPB2	rs9277549-?		6E-11		0.175	unit decrease	Affymetrix [427664]	N
619	chr6_cox_hap2	4499611	4499612	rs9277552	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Osteoarthritis of the hip or knee	39,427 European ancestry cases, 378,169 European ancestry controls	NA	6p21.32	NR	rs9277552-C	0.79	2E-10		1.06	[1.04-1.08]	Affymetrix, Illumina [up to 17000000] (imputed)	N
619	chr6_cox_hap2	4499611	4499612	rs9277552	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Knee osteoarthritis	24,955 European ancestry cases, 378,169 European ancestry controls	NA	6p21.32	NR	rs9277552-C	0.79	2E-8		1.07	[1.04-1.09]	Affymetrix, Illumina [up to 17000000] (imputed)	N
619	chr6_cox_hap2	4499648	4499649	rs9277554	28076899	Taylor KE	2017-01-11	Arthritis Rheumatol	Genome-Wide Association Analysis Reveals Genetic Heterogeneity of Sjogren's Syndrome According to Ancestry.	Sjogren's syndrome	460 Asian ancestry cases, 1125 Asian ancestry controls	NA	6p21.32	HLA-DPB1	rs9277554-?		3E-7		1.65	[1.37-2.00]	Illumina [302688]	N
619	chr6_cox_hap2	4499648	4499649	rs9277554	23740775	Xie G	2013-09-01	Arthritis Rheum	Association of granulomatosis with polyangiitis (Wegener's) with HLA-DPB1*04 and SEMA6A gene variants: evidence from genome-wide analysis.	Wegener's granulomatosis	459 European ancestry cases, 1,503 European ancestry controls	291 European ancestry cases, 317 European ancestry controls	6p21.32	HLA-DOA, HSD17B8, RING1, COL11A2, RXRB, HLA-DPB1*04, HLA-DPB1, HLA-DPB2	rs9277554-C	0.708	2E-50		4.17	[3.33-5.00]	Illumina [287802]	N
619	chr6_cox_hap2	4499715	4499716	rs9277555	24586183	Medici M	2014-02-27	PLoS Genet	Identification of novel genetic Loci associated with thyroid peroxidase antibodies and clinical thyroid disease.	Thyroid peroxidase antibody levels	12,353 European ancestry individuals	8,159 European ancestry individuals	6p21.32	NR	rs9277555-G		6E-7		0.0199	[0.010-0.030] unit increase	Affymetrix, Illumina [up to 3437411] (imputed)	N
619	chr6_cox_hap2	4499775	4499778	rs148969528	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p21.32	HLA-DPB1, HLA-DPA2	rs148969528-A	0.178395	3E-15		0.022868847	[0.017-0.029] unit increase	Affymetrix [93095623] (imputed)	N
619	chr6_cox_hap2	4499775	4499778	rs148969528	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	6p21.32	HLA-DPB1, HLA-DPA2	rs148969528-A	0.178377	1E-17		0.024778191	[0.019-0.03] unit increase	Affymetrix [93095623] (imputed)	N
619	chr6_cox_hap2	4500200	4500201	rs3128967	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6p21.32	NR	rs3128967-T	0.90959	2E-12		1.0504202	[1.04-1.06]	Affymetrix [15688218] (imputed)	N
619	chr6_cox_hap2	4500864	4500865	rs9277562	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic hepatitis B infection	2,234 East Asian ancestry cases, 169,588 East Asian ancestry controls	NA	6p21.32		rs9277562-T	0.575524651	5E-45		0.44033504	[0.38-0.5] unit increase	Illumina [13428705] (imputed)	N
619	chr6_cox_hap2	4502975	4502976	rs2179920	27501781	Shiraishi K	2016-08-09	Nat Commun	Association of variations in HLA class II and other loci with susceptibility to EGFR-mutated lung adenocarcinoma.	EGFR mutation-positive lung adenocarcinoma	663 Japanese ancestry cases, 4,367 Japanese ancestry controls	2,510 Japanese ancestry cases, 10,791 Japanese ancestry controls	6p21.32	HLA-DPB1	rs2179920-A	0.165	5E-17		1.36	[1.27-1.47]	Illumina [NR] (imputed)	N
619	chr6_cox_hap2	4504219	4504220	rs2281388	31050781	Zhao SX	2019-05-03	JAMA Netw Open	Assessment of Molecular Subtypes in Thyrotoxic Periodic Paralysis and Graves Disease Among Chinese Han Adults: A Population-Based Genome-Wide Association Study.	Thyrotoxic hypokalemic periodic paralysis and Graves disease	171 Han Chinese ancestry cases, 2,160 Han Chinese ancestry controls	362 Han Chinese ancestry cases, 1,089 Han Chinese ancestry controls	6p21.32	HLA-DPB1, COL11A2	rs2281388-?	0.33	2E-18		1.74	[1.54-1.98]	Illumina [2752055] (imputed)	N
619	chr6_cox_hap2	4504219	4504220	rs2281388	21841780	Chu X	2011-08-14	Nat Genet	A genome-wide association study identifies two new risk loci for Graves' disease.	Graves' disease	1,468 Chinese ancestry cases, 1,490 Chinese ancestry controls	3,994 Chinese ancestry cases, 3,510 Chinese ancestry controls	6p21.32	HLA, DPB1	rs2281388-T	0.32	2E-65		1.64	[1.55-1.74]	Illumina [486049]	N
619	chr6_cox_hap2	4504923	4504924	rs6928954	20639394	Kang TW	2010-07-16	Hum Mol Genet	Genome-wide association of serum bilirubin levels in Korean population.	Bilirubin levels	8,841 Korean ancestry individuals	1,096 Korean ancestry individuals	6p21.32	intergenic	rs6928954-?	0.023	1E-6		0.075	[NR] bilirubin level increase	Affymetrix [1227049] (imputed)	N
619	chr6_cox_hap2	4504971	4504972	rs2295119	32912934	Li M	2020-09-10	J Am Soc Nephrol	Genome-Wide Meta-Analysis Identifies Three Novel Susceptibility Loci and Reveals Ethnic Heterogeneity of Genetic Susceptibility for IgA Nephropathy.	IgA nephropathy	2,628 Chinese ancestry cases, 11,563 Chinese ancestry controls	6,879 Han Chinese ancestry cases, 9,019 Han Chinese ancestry controls, 1,039 Italian ancestry cases, 1,289 Italian ancestry controls	6p21.32	DPA1.DPB2	rs2295119-T	0.22960427086396265	3E-14	(East Asian)	1.3605813	[1.25664462393162-1.47311444258073]	NR [3611808] (imputed)	N
619	chr6_cox_hap2	4504971	4504972	rs2295119	29784950	Sawai H	2018-05-21	Sci Rep	Genome-wide association study identified new susceptible genetic variants in HLA class I region for hepatitis B virus-related hepatocellular carcinoma.	Hepatocellular carcinoma in hepatitis B infection	473 Japanese ancestry chronic hepatitis and hepatocellular carcinoma cases, 516 Japanese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma	153 Japanese ancestry chronic hepatitis and hepatocellular carcinoma cases, 614 Japanese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma, 94 Chinese ancestry chronic hepatitis and hepatocellular carcinoma cases, 187 Chinese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma, 185 Thai ancestry chronic hepatitis and hepatocellular carcinoma cases, 198 Thai ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma	6p21.32	HLA	rs2295119-?	NR	6E-7	(Japanese)	1.59	[1.32-1.89]	Affymetrix [447830]	N
619	chr6_cox_hap2	4504971	4504972	rs2295119	29784950	Sawai H	2018-05-21	Sci Rep	Genome-wide association study identified new susceptible genetic variants in HLA class I region for hepatitis B virus-related hepatocellular carcinoma.	Hepatocellular carcinoma in hepatitis B infection	473 Japanese ancestry chronic hepatitis and hepatocellular carcinoma cases, 516 Japanese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma	153 Japanese ancestry chronic hepatitis and hepatocellular carcinoma cases, 614 Japanese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma, 94 Chinese ancestry chronic hepatitis and hepatocellular carcinoma cases, 187 Chinese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma, 185 Thai ancestry chronic hepatitis and hepatocellular carcinoma cases, 198 Thai ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma	6p21.32	HLA	rs2295119-?	NR	5E-7		1.5873016	[1.32-1.89] Japanese	Affymetrix [447830]	N
619	chr6_cox_hap2	4505330	4505331	rs3130189	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.32		rs3130189-T	0.829	9E-13				Affymetrix [10369434] (imputed)	N
619	chr6_cox_hap2	4513713	4513714	rs3117245	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs3117245-C	NR	8E-9		1.174	[1.112-1.24]	Affymetrix [7846216] (imputed)	N
619	chr6_cox_hap2	4514039	4514040	rs3117242	22808956	Lyons PA	2012-07-19	N Engl J Med	Genetically distinct subsets within ANCA-associated vasculitis.	Antineutrophil cytoplasmic antibody-associated vasculitis	914 European ancestry cases, 5,259 European ancestry controls	1,454 European ancestry cases, 1,666 European ancestry controls	6p21.32	HLA-DP, COL11A2	rs3117242-?	NR	1E-71		3.67	[NR]	Affymetrix [NR]	N
619	chr6_cox_hap2	4515405	4515406	rs3128923	33736632	Zeng Z	2021-03-18	BMC Med Genomics	Genome-wide association study identifies new loci associated with risk of HBV infection and disease progression.	Hepatitis B	460 Chinese ancestry cases, 169 Chinese ancestry controls	NA	6p21.32	HLA-DPA2	rs3128923-?	NR	2E-6				Affymetrix [607153]	N
619	chr6_cox_hap2	4516255	4516256	rs4282438	24097066	Li Y	2013-10-06	Nat Genet	A genome-wide association study in Han Chinese identifies a susceptibility locus for primary Sjogren's syndrome at 7q11.23.	Sjogren's syndrome	542 Han Chinese ancestry cases, 1,050 Han Chinese ancestry controls	1,303 Han Chinese ancestry cases, 2,727 Han Chinese ancestry controls	6p21.32	COL11A2, HLA-DPB1, HLA-DPA1	rs4282438-G	0.3546	9E-25		1.58	[1.45-1.72]	Affymetrix [556134]	N
619	chr6_cox_hap2	4516255	4516256	rs4282438	23817570	Shi Y	2013-06-30	Nat Genet	A genome-wide association study identifies two new cervical cancer susceptibility loci at 4q12 and 17q12.	Cervical cancer	Up to 1,364 Han Chinese ancestry cases, up to 3,028 Han Chinese ancestry controls	4,167 Han Chinese ancestry cases, 7,196 Han Chinese ancestry controls	6p21.32	HLA-DPB2	rs4282438-?	0.56	5E-27	(Stringently Matched)	1.35	[1.27-1.41]	Affymetrix [563339]	N
619	chr6_cox_hap2	4516323	4516324	rs2064479	31044621	Rimpela JM	2019-05-02	Blood Press	Genome-wide association study of white-coat effect in hypertensive patients.	White coat effect (clinic diastolic blood pressure minus ambulatory diastolic blood pressure)	206 Finnish ancestry individuals	NA	6p21.32	HLA-DPB1	rs2064479-A	0.26	5E-6		2.4	[1.42-3.38] unit increase	Illumina [629414]	N
619	chr6_cox_hap2	4519545	4519546	rs910320	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.32	Intergenic	rs910320-?		8E-8		1.05	[1.03-1.07]	Illumina [7645193] (imputed)	N
619	chr6_cox_hap2	4519768	4519769	rs3128930	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p21.32	HLA-DPA1	rs3128930-C	0.683	7E-6		0.053	[0.029-0.077] unit increase	Affymetrix, Illumina [7374092] (imputed)	N
619	chr6_cox_hap2	4520192	4520193	rs872956	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.32	Intergenic	rs872956-?		8E-8		1.58	[1.34-1.86]	Illumina [7645193] (imputed)	N
619	chr6_cox_hap2	4520251	4520254	rs57746686	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cervical cancer	967 East Asian ancestry cases, 60,614 East Asian ancestry controls	NA	6p21.32		rs57746686-G	0.159023897	1E-9		0.38955024	[0.26-0.52] unit increase	Illumina [13381745] (imputed)	N
619	chr6_cox_hap2	4522262	4522263	rs3130218	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cervical cancer	6,563 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs3130218-A	NR	5E-9		1.16171	NR	Affymetrix [7846216] (imputed)	N
619	chr6_cox_hap2	4526366	4526367	rs9277630	34246321	Fukunaga K	2021-07-10	Am J Hum Genet	Genome-wide association study reveals an association between the HLA-DPB1<sup>*</sup>02:01:02 allele and wheat-dependent exercise-induced anaphylaxis.	Wheat-dependent exercise-induced anaphylaxis	77 Japanese ancestry cases, 924 Japanese ancestry controls	91 Japanese ancestry cases, 435 Japanese ancestry controls	6p21.32		rs9277630-A	0.26	1E-11		3.53	[2.45-5.09]	Illumina [3891096] (imputed)	N
619	chr6_cox_hap2	4526407	4526408	rs733208	24722205	Kwak SH	2014-04-17	Hum Mol Genet	A genome-wide association study on thyroid function and anti-thyroid peroxidase antibodies in Koreans.	Thyroid peroxidase antibody positivity	377 Korean ancestry cases, 3,019 Korean ancestry anti-TPO controls	108 Korean ancestry cases, 734 Korean ancestry controls	6p21.32	HLA-DPB2	rs733208-A	0.30	4E-7		1.435	[1.30-1.57]	Affymetrix [1418709] (imputed)	N
619	chr6_cox_hap2	4526611	4526612	rs9277636	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	6p21.32	NR	rs9277636-G	0.153	3E-8		0.0105227	[0.0068-0.0143] unit increase	NR [~ 9732723] (imputed)	N
619	chr6_cox_hap2	4529528	4529529	rs139394070	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	6p21.32		rs139394070-?	NR	5E-8				Affymetrix [NR] (imputed)	N
619	chr6_cox_hap2	4530357	4530358	rs3117035	20031603	Marroni F	2009-08-01	Circ Cardiovasc Genet	A genome-wide association scan of RR and QT interval duration in 3 European genetically isolated populations: the EUROSPAN project.	RR interval (heart rate)	2,325 European ancestry individuals	NA	6p21.32	intergenic	rs3117035-A	0.48	1E-6		0.14	[0.08-0.20] unit decrease	Illumina [~ 318327]	N
619	chr6_cox_hap2	4530556	4530557	rs1883414	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	6p21.32	HLA-DPB2, HLA-DPB1, HLA-DPA1	rs1883414-G	0.68	2E-11		1.22	[NR]	Illumina [> 1000000] (imputed)	N
619	chr6_cox_hap2	4530556	4530557	rs1883414	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	6p21.32	HLA-DPB1, HLA-DPA1, HLA-DPB2	rs1883414-G	0.68	5E-7	(EA)	1.2	[NR]	Illumina [> 1000000] (imputed)	N
619	chr6_cox_hap2	4530556	4530557	rs1883414	21399633	Gharavi AG	2011-03-13	Nat Genet	Genome-wide association study identifies susceptibility loci for IgA nephropathy.	Nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls	712 Han Chinese ancestry cases, 748 Han Chinese ancestry controls, 1,238 European ancestry cases, 1,172 European ancestry controls	6p21.32	HLA-DPA1, HLA-DPB1, HLA-DPB2	rs1883414-?	0.67 (EA)	5E-9		1.28	[NR]	Illumina [498322]	N
619	chr6_cox_hap2	4532203	4532204	rs115311892	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein COL11A2	5,366 Icelandic ancestry individuals	NA	6p21.32		rs115311892-T	0.01149	1E-16		0.748771	[0.57-0.93] unit increase	Illumina [7506463] (imputed)	N
619	chr6_cox_hap2	4533745	4533746	rs3117027	23482656	Chen D	2013-03-12	J Natl Cancer Inst	Genome-wide association study of susceptibility loci for cervical cancer.	Cervical cancer	1,034 European ancestry cases, 3,948 European ancestry controls	1,140 European ancestry cases, 1,058 European ancestry controls	6p21.32	HLA-DPB2	rs3117027-?	NR	1E-7		1.25	[1.15-1.36]	Illumina [632668]	N
619	chr6_cox_hap2	4540494	4540495	rs117232140	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	6p21.32	HLA-DPB2	rs117232140-?	NR	7E-9		0.096564196	[0.064-0.129] unit decrease	Illumina [27896057] (imputed)	N
619	chr6_cox_hap2	4540495	4540496	rs3117006	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma and attention deficit hyperactivity disorder	46,802 European ancestry asthma cases, 19,099 European ancestry attention deficit hyperactivity disorder cases, 381,675 European ancestry controls	NA	6p21.32	HLA-DPB2	rs3117006-?	NR	3E-8				Affymetrix [up to 8274727] (imputed)	N
619	chr6_cox_hap2	4540495	4540496	rs3117006	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma (childhood onset)	9,676 European ancestry cases, 347,481 European ancestry controls	NA	6p21.32	HLA-DPB2	rs3117006-?	NR	2E-6		0.0766984	[0.044-0.109] unit increase	Affymetrix [8274727] (imputed)	N
619	chr6_cox_hap2	4541208	4541209	rs3129270	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs3129270-T	NR	1E-7		1.1494253	[1.09-1.21]	Affymetrix [7846216] (imputed)	N
619	chr6_cox_hap2	4541399	4541400	rs3129269	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	6p21.32	HLA-DPB2, HLA-DPB1, HLA-DPA1	rs3129269-C	NR	5E-7	(East Asian)	1.29	[NR]	Illumina [> 1000000] (imputed)	N
619	chr6_cox_hap2	4541836	4541837	rs3116995	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.32	NR	rs3116995-?	NR	6E-9				Affymetrix [~ 8270000] (imputed)	N
619	chr6_cox_hap2	4542129	4542130	rs6901830	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	6p21.32	HCG24	rs6901830-G	0.847121	1E-19		1.0788485	[1.0613158162383-1.09667081279089]	NR [9572556] (imputed)	N
619	chr6_cox_hap2	4542354	4542355	rs9277768	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hashimoto thyroiditis	537 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	6p21.32		rs9277768-T	0.335380575	4E-10		0.4089919	[0.28-0.54] unit increase	Illumina [13428945] (imputed)	N
619	chr6_cox_hap2	4542381	4542382	rs9277769	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.32		rs9277769-C	0.368	4E-12				Affymetrix [10369434] (imputed)	N
619	chr6_cox_hap2	4542582	4542583	rs3116994	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.32		rs3116994-G	0.461	2E-9				Affymetrix [10369434] (imputed)	N
619	chr6_cox_hap2	4542582	4542583	rs3116994	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs3116994-A	0.548	6E-12	(Collagen alpha-2(XI) chain, COL11A2.11278.4.3)	0.17	[0.13-0.21] unit increase	Affymetrix [10572788] (imputed)	N
619	chr6_cox_hap2	4543323	4543324	rs3116989	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma onset (childhood vs adult)	13,962 European ancestry childhood onset cases, 14,873 European ancestry adult onset cases	31,002 European ancestry childhood onset cases, 16,297 European ancestry adult onset cases	6p21.32	COL11A2, HLA-DPB2	rs3116989-G	0.867	4E-6		1.073	[1.04-1.1]	Affymetrix [9000000] (imputed)	N
619	chr6_cox_hap2	4543323	4543324	rs3116989	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	6p21.32	HLA-DPB2, COL11A2	rs3116989-?	NR	3E-17		1.096	[1.07-1.12]	Affymetrix [9000000] (imputed)	N
619	chr6_cox_hap2	4543323	4543324	rs3116989	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	6p21.32	HLA-DPB2, COL11A2	rs3116989-G	NR	4E-14		1.078	[1.06-1.1]	Affymetrix [9000000] (imputed)	N
619	chr6_cox_hap2	4547971	4547972	rs9366816	24940741	Chang SW	2014-06-18	PLoS One	A genome-wide association study on chronic HBV infection and its clinical progression in male Han-Taiwanese.	Chronic hepatitis B infection	321 Chinese ancestry cases, 304 Chinese ancestry controls	1,302 Chinese ancestry cases, 761 Chinese ancestry controls		HLA-DPA3	rs9366816-C	0.414	3E-10		1.43	[1.28-1.60]	Illumina [456262]	N
619	chr6_cox_hap2	4548468	4548469	rs9277841	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6p21.32	HLA-DPA3	rs9277841-A	0.43233	1E-12		0.015864564	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
619	chr6_cox_hap2	4568765	4568766	rs9277914	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	COL11A2	rs9277914-A	NR	8E-9		0.0222494	[0.015-0.03] unit increase	Affymetrix [321016] (imputed)	N
619	chr6_cox_hap2	4568808	4568809	rs3130160	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.32	NR	rs3130160-?	NR	9E-11				Affymetrix [~ 8270000] (imputed)	N
619	chr6_cox_hap2	4569695	4569696	rs3129205	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	COL11A2	rs3129205-T	0.348	3E-25	(Collagen alpha-2(XI) chain, COL11A2.11278.4.3)	0.27	[0.21-0.33] unit increase	Affymetrix [10572788] (imputed)	N
619	chr6_cox_hap2	4576066	4576067	rs2229790	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	6p21.32	COL11A2	rs2229790-?	NR	3E-13		0.313	[0.23-0.4] unit decrease	Illumina [34656550] (imputed)	N
619	chr6_cox_hap2	4579897	4579898	rs73741509	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.32		rs73741509-C	0.971	2E-14				Affymetrix [10369434] (imputed)	N
619	chr6_cox_hap2	4580474	4580475	rs2855446	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6p21.32	Intergenic	rs2855446-A	0.6847	4E-9	(MTAG)	0.0083	[0.0056-0.011] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
619	chr6_cox_hap2	4582335	4582336	rs2855440	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein COL11A2	5,366 Icelandic ancestry individuals	NA	6p21.32		rs2855440-T	0.3577	4E-31		0.229242	[0.19-0.27] unit decrease	Illumina [7506463] (imputed)	N
619	chr6_cox_hap2	4583471	4583472	rs73741526	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.32		rs73741526-A	0.971	3E-13				Affymetrix [10369434] (imputed)	N
619	chr6_cox_hap2	4585514	4585515	rs147927477	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Height	458,235 European ancestry individuals	NA	6p21.32		rs147927477-?	NR	9E-12		0.215425	[0.15-0.28] unit decrease	NR [9800000] (imputed)	N
620	chr6_cox_hap2	4587783	4587784	rs2254287	18193043	Willer CJ	2008-01-13	Nat Genet	Newly identified loci that influence lipid concentrations and risk of coronary artery disease.	LDL cholesterol	8,589 European ancestry individuals	12,981 European ancestry individuals	6p21.32	B3GALT4	rs2254287-G	0.38	5E-8		1.91	[NR] mg/dl increase	Affymetrix, Illumina [~ 2261000] (imputed)	N
620	chr6_cox_hap2	4588078	4588079	rs1799908	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	COL11A2	rs1799908-A	NR	5E-10		0.0178819	[0.012-0.024] unit decrease	Affymetrix [321016] (imputed)	N
620	chr6_cox_hap2	4595715	4595716	rs41317102	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	6p21.32	COL11A2	rs41317102-C	NR	2E-7		0.247907	[0.15-0.34] unit increase	Illumina [at least 950000] (imputed)	N
620	chr6_cox_hap2	4597363	4597364	rs9277934	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	COL11A2	rs9277934-T	NR	2E-10		0.0194123	[0.013-0.025] unit increase	Affymetrix [321016] (imputed)	N
620	chr6_cox_hap2	4604052	4604053	rs144092339	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein COL11A2	5,366 Icelandic ancestry individuals	NA	6p21.32		rs144092339-T	0.02245	3E-20		0.580629	[0.46-0.7] unit increase	Illumina [7506463] (imputed)	N
620	chr6_cox_hap2	4604052	4604053	rs144092339	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs144092339-T	0.037	1E-22	(Collagen alpha-2(XI) chain, COL11A2.11278.4.3)	0.63	[0.51-0.75] unit increase	Affymetrix [10572788] (imputed)	N
620	chr6_cox_hap2	4605496	4605497	rs1050673	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.32	NR	rs1050673-G	0.64734375	4E-21	(COL11A2, 11278_4_3)	0.24454433	[0.19-0.29] unit increase	Illumina [> 1000000] (imputed)	N
620	chr6_cox_hap2	4605496	4605497	rs1050673	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.32	NR	rs1050673-G	0.64734375	3E-9	(MICA, 2730_58_2)	0.15462574	[0.1-0.21] unit increase	Illumina [> 1000000] (imputed)	N
620	chr6_cox_hap2	4613225	4613226	rs35690712	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs35690712-C	0.03	6E-22	(Collagen alpha-2(XI) chain, COL11A2.11278.4.3)	0.69	[0.55-0.83] unit increase	Affymetrix [10572788] (imputed)	N
620	chr6_cox_hap2	4618612	4618613	rs421446	27244555	Li Y	2016-05-31	Nat Commun	Genome-wide association study identifies 8p21.3 associated with persistent hepatitis B virus infection among Chinese.	Persistent hepatitis B virus infection	1,251 Chinese ancestry persistently infected cases, 1,057 Chinese ancestry spontaneously recovered controls	3,905 Chinese ancestry persistently infected cases, 3,356 Chinese ancestry spontaneously recovered controls	6p21.32	MIR219A1	rs421446-G		3E-6		1.47	[1.25-1.72]	Affymetrix, Illumina [up to 4494311] (imputed)	N
620	chr6_cox_hap2	4636249	4636250	rs146306986	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.32	TAPBP	rs146306986-C	0.99	3E-96	(TAPBP, 12378_71_3)	2.5151718	[2.29-2.74] unit decrease	Illumina [> 1000000] (imputed)	N
620	chr6_cox_hap2	4636751	4636752	rs1705001	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	6p21.32	intergenic	rs1705001-A	0.2413	4E-11		0.0133	[0.0094-0.0172] unit increase	Affymetrix [18391927] (imputed)	N
620	chr6_cox_hap2	4638319	4638320	rs411919	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	6p21.32	RING1	rs411919-G	0.73	8E-14				NR [> 9500000] (imputed)	N
620	chr6_cox_hap2	4641456	4641457	rs77206300	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PDIA3	5,363 Icelandic ancestry individuals	NA	6p21.32		rs77206300-A	0.01105	6E-12		0.630021	[0.45-0.81] unit increase	Illumina [7506463] (imputed)	N
620	chr6_cox_hap2	4648119	4648120	rs9277952	23817570	Shi Y	2013-06-30	Nat Genet	A genome-wide association study identifies two new cervical cancer susceptibility loci at 4q12 and 17q12.	Cervical cancer	Up to 1,364 Han Chinese ancestry cases, up to 3,028 Han Chinese ancestry controls	4,167 Han Chinese ancestry cases, 7,196 Han Chinese ancestry controls	6p21.32	intergenic	rs9277952-?	0.53	2E-9	(Matched)	1.18	[1.12-1.23]	Affymetrix [563339]	N
620	chr6_cox_hap2	4683678	4683679	rs17215231	32424353	Zhang H	2020-05-18	Nat Genet	Genome-wide association study identifies 32 novel breast cancer susceptibility loci from overall and subtype-specific analyses.	Breast cancer (estrogen-receptor negative, progesterone-receptor negative, and human epidermal growth factor-receptor negative)	8,602 European ancestry triple negative cases, 9,414 European ancestry BRCA1 mutation carrier cases, 100,971 European ancestry controls	NA	6p21.32	NR	rs17215231-C	0.92	9E-13		1.1764705	[1.12-1.23]	Illumina [~ 9700000] (imputed)	N
620	chr6_cox_hap2	4690327	4690328	rs3445	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	6p21.32	NR	rs3445-A	0.156	1E-9		0.00933656	[0.0063-0.0123] unit increase	NR [9732723] (imputed)	N
620	chr6_cox_hap2	4694285	4694286	rs469064	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TAPBP	5,359 Icelandic ancestry individuals	NA	6p21.32		rs469064-C	0.4368	9E-113		0.401004	[0.37-0.44] unit increase	Illumina [7506463] (imputed)	N
620	chr6_cox_hap2	4715775	4715776	rs144706539	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TAPBP	5,359 Icelandic ancestry individuals	NA	6p21.32		rs144706539-A	0.0122	6E-205		2.36433	[2.21-2.52] unit increase	Illumina [7506463] (imputed)	N
620	chr6_cox_hap2	4715775	4715776	rs144706539	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	TAPBP	rs144706539-A	0.015	5E-94	(Tapasin, TAPBP.12378.71.3)	1.98	[1.78-2.18] unit increase	Affymetrix [10572788] (imputed)	N
621	chr6_cox_hap2	4720581	4720582	rs9277972	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	6p21.32	NA	rs9277972-A	0.8069	5E-15		0.017	[0.013-0.021] unit decrease	NR [~ 27400000] (imputed)	N
621	chr6_cox_hap2	4724121	4724122	rs2282851	34050765	Zhang L	2021-05-29	J Clin Endocrinol Metab	Joint genome-wide association analyses identified 49 novel loci for age at natural menopause.	Age at menopause	181,219 European ancestry individuals, 43,861 East Asian ancestry individuals	NA	6p21.32		rs2282851-T	0.28	1E-9		0.08	unit increase	Illumina [2093892] (imputed)	N
621	chr6_cox_hap2	4724121	4724122	rs2282851	34050765	Zhang L	2021-05-29	J Clin Endocrinol Metab	Joint genome-wide association analyses identified 49 novel loci for age at natural menopause.	Age at menopause	181,219 European ancestry individuals	NA	6p21.32		rs2282851-T	0.28	2E-9		0.09	unit increase	Illumina [2398641] (imputed)	N
621	chr6_cox_hap2	4726149	4726150	rs1061801	33128006	Timmins IR	2020-10-30	Commun Biol	Genome-wide association study of self-reported walking pace suggests beneficial effects of brisk walking on health and survival.	Walking pace	450,967 European ancestry individuals	NA	6p21.32	ZBTB22	rs1061801-G	NR	5E-8		0.00866168	[0.0055-0.0118] unit increase	Affymetrix [10061374] (imputed)	N
621	chr6_cox_hap2	4726149	4726150	rs1061801	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (father's age at death)	309,383 European ancestry individuals	NA	6p21.32	NR	rs1061801-A	NR	3E-6		0.01574	[0.0091-0.0224] unit decrease	Illumina [541614]	N
621	chr6_cox_hap2	4726149	4726150	rs1061801	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (father's age at death or father's attained age)	up to 699,000 European ancestry individuals	NA	6p21.32	NR	rs1061801-G		2E-6				Illumina [458865]	N
621	chr6_cox_hap2	4726149	4726150	rs1061801	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6p21.32		rs1061801-A	0.187	1E-9		0.011	[0.0075-0.0145] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
621	chr6_cox_hap2	4726149	4726150	rs1061801	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6p21.32	Intergenic	rs1061801-A	0.187	2E-10	(MTAG)	0.0108	[0.0075-0.0141] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
621	chr6_cox_hap2	4737920	4737921	rs9277979	30120083	Ferguson A	2018-08-14	EBioMedicine	Genome-Wide Association Study of Circadian Rhythmicity in 71,500 UK Biobank Participants and Polygenic Association with Mood Instability.	Disrupted circadian rhythm (low relative amplitude of rest-activity cycles)	at least 2,700 European ancestry cases, at least 68,300 European ancestry controls	NA	6p21.32	DAXX	rs9277979-T	NR	2E-6		0.167	unit increase	Affymetrix [7969123] (imputed)	N
621	chr6_cox_hap2	4750050	4750051	rs9277988	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6p21.32	NR	rs9277988-?	NR	3E-13				Affymetrix [~ 8270000] (imputed)	N
621	chr6_cox_hap2	4750050	4750051	rs9277988	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	6p21.32	NR	rs9277988-C	0.1959	7E-14		0.023318363	[0.017-0.029] unit increase	Affymetrix [10549349] (imputed)	N
621	chr6_cox_hap2	4750050	4750051	rs9277988	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	6p21.32	NR	rs9277988-C	0.188	7E-8		0.0104018	[0.0066-0.0142] unit decrease	NR [9732723] (imputed)	N
621	chr6_cox_hap2	4751944	4751945	rs3130269	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs3130269-A	0.514	3E-63	(Tapasin, TAPBP.12378.71.3)	0.39	[0.35-0.43] unit decrease	Affymetrix [10572788] (imputed)	N
621	chr6_cox_hap2	4752926	4752927	rs184722928	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	Systemic lupus erythematosus	1,639 East Asian ancestry cases, 2,410 East Asian ancestry controls	NA			rs184722928-A	NR	7E-6		0.6037	[0.34-0.87] unit decrease	Illumina [NR] (imputed)	N
621	chr6_cox_hap2	4756262	4756263	rs9277992	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		6p21.32	DAXX	rs9277992-G	0.810445	6E-14		0.0132109	[0.0098-0.0167] unit decrease	Affymetrix [12370749]	N
621	chr6_cox_hap2	4760257	4760258	rs187208364	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	6p21.32		rs187208364-?	NR	5E-8				Affymetrix [NR] (imputed)	N
621	chr6_cox_hap2	4763619	4763620	rs9278004	34197731	Li Q	2021-06-23	Am J Hum Genet	Whole-exome sequencing reveals common and rare variants in immunologic and neurological genes implicated in achalasia.	Idiopathic achalasia	280 Chinese Han ancestry cases, 1,121 Chinese Han ancestry controls	NA	6p21.32		rs9278004-A	0.045	6E-6		2.9	[1.83-4.6]	Illumina [476650] (imputed)	N
621	chr6_cox_hap2	4770511	4770512	rs9278020	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	6p21.32	NR	rs9278020-A	0.1012	4E-8				NR [9056863] (imputed)	N
621	chr6_cox_hap2	4772516	4772517	rs114984535	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	6p21.32	DAXX, KIFC1	rs114984535-T	0.985403356	2E-6		1.2639532	[1.15-1.39]	Illumina [10439017] (imputed)	N
621	chr6_cox_hap2	4789419	4789420	rs118109745	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	6p21.32		rs118109745-?	NR	7E-10		0.0811	unit decrease	NR [NR]	N
585	chr6_dbb_hap3	168	169	rs150814685	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma and major depressive disorder	46,802 European ancestry asthma cases, 59,851 European ancestry major depressive disorder cases, 460,635 European ancestry controls	NA	6p22.1	C6orf100, GPX5, GPX6, HCG14, LOC401242, NKAPL, OR2B3, OR2J2, OR2J3, OR2W1, TRIM27, ZBED9, ZKSCAN3, ZKSCAN4, ZNF311, ZSCAN12, ZSCAN23, ZSCAN26, ZSCAN31, LOC100129636, PGBD1	rs150814685-?	NR	2E-11				Affymetrix [up to 13554551] (imputed)	N
585	chr6_dbb_hap3	1363	1364	rs16894234	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6p22.1	NR	rs16894234-?	NR	3E-12				Affymetrix [~ 8270000] (imputed)	N
585	chr6_dbb_hap3	15646	15647	rs1233578	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	RPSAP2	rs1233578-G	NR	2E-8		0.0228089	[0.015-0.031] unit decrease	Affymetrix [323858] (imputed)	N
585	chr6_dbb_hap3	15646	15647	rs1233578	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p22.1	NR	rs1233578-G	0.18	4E-9		1.13	[1.08-1.18]	Affymetrix [9886854] (imputed)	N
585	chr6_dbb_hap3	15646	15647	rs1233578	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p22.1	NR	rs1233578-G	0.18	4E-14			[NR]	Affymetrix [9886854] (imputed)	N
585	chr6_dbb_hap3	15646	15647	rs1233578	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p22.1	NR	rs1233578-G	0.18	2E-11		1.11	[1.08-1.14]	Affymetrix [9886854] (imputed)	N
585	chr6_dbb_hap3	15646	15647	rs1233578	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p22.1	NR	rs1233578-G	0.18	8E-14			[NR]	Affymetrix [9886854] (imputed)	N
585	chr6_dbb_hap3	15646	15647	rs1233578	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in non-current smokers	16,488 European ancestry cases, 169,688 European ancestry controls	NA	6p22.1	NR	rs1233578-G	0.18	2E-11		1.11	[1.08-1.14]	Affymetrix [9886854] (imputed)	N
585	chr6_dbb_hap3	15646	15647	rs1233578	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in never smokers	8,631 European ancestry cases, 120,544 European ancestry controls	NA	6p22.1	NR	rs1233578-G	0.18	3E-9		1.13	[1.09-1.18]	Affymetrix [9886854] (imputed)	N
585	chr6_dbb_hap3	15646	15647	rs1233578	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in ever smokers	12,446 European ancestry cases, 59,145 European ancestry controls	NA	6p22.1	NR	rs1233578-G	0.18	3E-7		1.1	[1.06-1.15]	Affymetrix [9886854] (imputed)	N
585	chr6_dbb_hap3	15646	15647	rs1233578	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	6p22.1	TRIM27	rs1233578-G	0.18	2E-17				NR [> 9500000] (imputed)	N
585	chr6_dbb_hap3	15646	15647	rs1233578	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	6p22.1	TRIM27	rs1233578-G	0.17936300000000005	4E-12		1.0560242	[1.03991341766738-1.07238465256811]	NR [9572556] (imputed)	N
585	chr6_dbb_hap3	15646	15647	rs1233578	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	6p22.1	NR	rs1233578-A	NR	1E-9		6.098	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
585	chr6_dbb_hap3	15646	15647	rs1233578	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	RPSAP2	rs1233578-A	NR	5E-12		6.899	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
585	chr6_dbb_hap3	15646	15647	rs1233578	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls, 2,149 African ancestry cases, 6,055 African ancestry controls, 1,239 Japanese ancestry cases, 3,976 Japanese ancestry controls, 606 Latino cases, 792 Latino controls	NA	6p22.1	GPX5, TRIM27	rs1233578-G	0.13	6E-7		1.09	[1.05-1.12]	Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
585	chr6_dbb_hap3	15646	15647	rs1233578	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls	NA	6p22.1	GPX5, TRIM27	rs1233578-G	0.13	5E-9		0.1	[0.061-0.139] unit increase	Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
585	chr6_dbb_hap3	17356	17358	rs372002372	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs372002372-?		2E-10	(Posterior corona radiata )			NR [8955960] (imputed)	N
585	chr6_dbb_hap3	17356	17358	rs372002372	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs372002372-?		1E-11	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
585	chr6_dbb_hap3	17356	17358	rs372002372	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs372002372-?		1E-11	(Superior corona radiata)			NR [8955960] (imputed)	N
585	chr6_dbb_hap3	17356	17358	rs372002372	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs372002372-?		5E-8	(Average across all tracts)			NR [8955960] (imputed)	N
585	chr6_dbb_hap3	17356	17358	rs372002372	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs372002372-?		2E-11	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
585	chr6_dbb_hap3	17356	17358	rs372002372	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs372002372-?		2E-10	(Posterior corona radiata )			NR [8955960] (imputed)	N
585	chr6_dbb_hap3	18166	18167	rs7763390	33740410	Warrier V	2021-03-16	Lancet Psychiatry	Gene-environment correlations and causal effects of childhood maltreatment on physical and mental health: a genetically informed approach.	Childhood maltreatment	185,414 European ancestry individuals	NA	6p22.1	NR	rs7763390-A	0.84	7E-9		0.027	[0.017-0.037] unit decrease	Affymetrix, Illumina [at least 500527] (imputed)	N
585	chr6_dbb_hap3	23162	23163	rs1233587	32358547	Persyn E	2020-05-01	Nat Commun	Genome-wide association study of MRI markers of cerebral small vessel disease in 42,310 participants.	White matter integrity (mean diffusivity)	17,467 European ancestry individuals	NA	6p22.1	ZFP57	rs1233587-T	0.295257	6E-12		0.325855	[0.23-0.42] unit decrease	Affymetrix [NR] (imputed)	N
585	chr6_dbb_hap3	23162	23163	rs1233587	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs1233587-?		2E-8	(Anterior corona radiata)			NR [8955960] (imputed)	N
585	chr6_dbb_hap3	24941	24942	rs1742741	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs1742741-?		4E-9	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
585	chr6_dbb_hap3	24941	24942	rs1742741	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs1742741-?		8E-9	(Retrolenticular part of internal capsule)			NR [8955960] (imputed)	N
585	chr6_dbb_hap3	24941	24942	rs1742741	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	6p22.1	NR	rs1742741-?		2E-8	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
585	chr6_dbb_hap3	24941	24942	rs1742741	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	6p22.1	NR	rs1742741-?		2E-8	(Average across all tracts)			NR [8955960] (imputed)	N
585	chr6_dbb_hap3	27099	27100	rs568609045	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium HDL	115,082 European ancestry individuals	NA	6p22.1		rs568609045-G	0.908816	1E-8		0.0550229	[0.036-0.074] unit increase	NR [11722792] (imputed)	N
585	chr6_dbb_hap3	27099	27100	rs568609045	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large HDL	115,082 European ancestry individuals	NA	6p22.1		rs568609045-G	0.908816	4E-9		0.0550531	[0.037-0.073] unit increase	NR [11722792] (imputed)	N
585	chr6_dbb_hap3	27099	27100	rs568609045	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in HDL	115,082 European ancestry individuals	NA	6p22.1		rs568609045-G	0.908816	4E-8		0.052683	[0.034-0.071] unit increase	NR [11722792] (imputed)	N
585	chr6_dbb_hap3	28411	28411	rs71548373	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	6p22.1	intergenic	rs71548373-?	NR	6E-13		0.0283	[0.021-0.035] unit decrease	Affymetrix [5701386] (imputed)	N
585	chr6_dbb_hap3	31004	31005	rs1233595	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs1233595-?		2E-9	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
585	chr6_dbb_hap3	31004	31005	rs1233595	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs1233595-?		1E-9	(Average across all tracts)			NR [8955960] (imputed)	N
585	chr6_dbb_hap3	31004	31005	rs1233595	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs1233595-?		4E-9	(Average across all tracts)			NR [8955960] (imputed)	N
585	chr6_dbb_hap3	31004	31005	rs1233595	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs1233595-?		3E-9	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
585	chr6_dbb_hap3	38083	38084	rs1233604	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p22.1	AL662890.1	rs1233604-A	NR	4E-8		0.0237945	[0.015-0.032] unit decrease	Affymetrix [319769] (imputed)	N
585	chr6_dbb_hap3	40380	40381	rs9257158	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p22.1	AL662890.1	rs9257158-G	NR	1E-8		0.0194989	[0.013-0.026] unit decrease	Affymetrix [323123] (imputed)	N
585	chr6_dbb_hap3	68370	68371	rs9257190	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p22.1	AL662890.3	rs9257190-G	NR	2E-10		0.0253484	[0.018-0.033] unit decrease	Affymetrix [323858] (imputed)	N
585	chr6_dbb_hap3	69756	69756	rs202065757	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p22.1	NR	rs202065757-?	NR	3E-6		0.1767	[0.1-0.25] unit increase	Illumina [at least 560000] (imputed)	N
585	chr6_dbb_hap3	71540	71541	rs141456208	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs141456208-?		4E-6		1.75	[1.38-2.23]	Illumina [7645193] (imputed)	N
585	chr6_dbb_hap3	74096	74097	rs7739915	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p22.1		rs7739915-G	0.829881	3E-8		0.0298334	[0.019-0.04] unit decrease	NR [11722792] (imputed)	N
585	chr6_dbb_hap3	74611	74612	rs2013652	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p22.1		rs2013652-T	0.605	3E-27				Affymetrix [10369434] (imputed)	N
585	chr6_dbb_hap3	79526	79527	rs4324798	19836008	Landi MT	2009-10-15	Am J Hum Genet	A genome-wide association study of lung cancer identifies a region of chromosome 5p15 associated with risk for adenocarcinoma.	Lung adenocarcinoma	5,739 European ancestry cases, 5,848 European ancestry controls	7,561 European ancestry cases, 13,818 European ancestry controls	6p22.1	TRNAA-UGC	rs4324798-A	0.09	2E-8		1.16	[1.09-1.24]	Illumina [515922]	N
585	chr6_dbb_hap3	82328	82328	rs142204688	32227112	Lee MA	2020-03-30	Hum Mol Genet	Common variation at 16p11.2 is associated with glycosuria in pregnancy: Findings from a genome-wide association study in European women.	Glycosuria in pregnancy (offspring genotype effect)	747 European ancestry cases, 2,991 European ancestry controls	NA	6p22.1	NR	rs142204688-ATTT	0.024554775	2E-9		3.1145043	[2.74466796-3.4843406]	Illumina [9873828] (imputed)	N
585	chr6_dbb_hap3	90602	90603	rs9257226	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6p22.1	XXbac-BPG308K3.5	rs9257226-G	NR	2E-9		0.0237897	[0.016-0.032] unit decrease	Affymetrix [321114] (imputed)	N
585	chr6_dbb_hap3	95090	95091	rs67662386	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	6p22.1	NR	rs67662386-?	NR	5E-7		0.135361	[0.082-0.188] unit increase	NR [13958389] (imputed)	N
585	chr6_dbb_hap3	95487	95488	rs187766969	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p22.1	NR	rs187766969-?	NR	3E-10		0.1907	[0.13-0.25] unit decrease	Illumina [at least 560000] (imputed)	N
585	chr6_dbb_hap3	95886	95887	rs209181	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	XXbac-BPG308K3.5	rs209181-A	NR	3E-15		0.032556	[0.024-0.041] unit decrease	Affymetrix [323858] (imputed)	N
585	chr6_dbb_hap3	95886	95887	rs209181	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	XXbac-BPG308K3.5	rs209181-A	NR	4E-15		0.0325128	[0.024-0.041] unit decrease	Affymetrix [127266] (imputed)	N
585	chr6_dbb_hap3	97313	97314	rs3118359	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	6p22.1	intergenic	rs3118359-T	0.0838	3E-13		0.0378	[0.028-0.048] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
585	chr6_dbb_hap3	99265	99266	rs3135296	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Neuroticism	274,107 British ancestry individuals	NA	6p22.1	NR	rs3135296-?	NR	6E-6		1.0090817	[1.01-1.01]	NR [8968716] (imputed)	N
585	chr6_dbb_hap3	99265	99266	rs3135296	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Major depressive disorder (lifetime)	16,301 British ancestry cases, 50,870 British ancestry controls	NA	6p22.1	NR	rs3135296-?	NR	5E-7		1.1049724	[1.06-1.15]	NR [5276842] (imputed)	N
585	chr6_dbb_hap3	99265	99266	rs3135296	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Help-seeking from a GP (without major depressive disorder symptoms)	8,632 British ancestry cases, 49,493 British ancestry controls	NA	6p22.1	NR	rs3135296-?	NR	1E-6		1.1350738	[1.08-1.19]	NR [5276842] (imputed)	N
585	chr6_dbb_hap3	99265	99266	rs3135296	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Help-seeking from a GP	113,262 British ancestry cases, 219,360 British ancestry controls	NA	6p22.1	NR	rs3135296-A	0.88	4E-12		1.0570824	[1.04-1.07]	NR [5276842] (imputed)	N
585	chr6_dbb_hap3	99480	99481	rs3131337	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	6p22.1	TRIM27	rs3131337-G	0.871891	1E-14		0.0229188	[0.017-0.029] unit increase	Affymetrix [NR] (imputed)	N
585	chr6_dbb_hap3	99480	99481	rs3131337	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	6p22.1	NR	rs3131337-?	NR	7E-6		0.0811	[0.046-0.116] unit decrease	Illumina [at least 560000] (imputed)	N
585	chr6_dbb_hap3	99869	99870	rs3132379	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	XXbac-BPG308K3.5	rs3132379-T	NR	1E-8		0.0232897	[0.015-0.031] unit decrease	Affymetrix [323858] (imputed)	N
585	chr6_dbb_hap3	99869	99870	rs3132379	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	XXbac-BPG308K3.5	rs3132379-T	NR	2E-8		0.0229592	[0.015-0.031] unit decrease	Affymetrix [127266] (imputed)	N
585	chr6_dbb_hap3	103419	103420	rs9278091	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA	6p22.1	NR	rs9278091-?	NR	6E-7		0.0586	[0.036-0.082] unit increase	Illumina [at least 560000] (imputed)	N
585	chr6_dbb_hap3	103690	103691	rs150548387	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Daytime sleep phenotypes	874 European ancestry individuals	NA	6p22.1	RPL13P, ZNF90P2, HCG14, TRIM27	rs150548387-G	NR	7E-7	(daytime resting)	2.54	[1.54-3.54] unit decrease	Affymetrix [7141204] (imputed)	N
585	chr6_dbb_hap3	106700	106701	rs9257248	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p22.1	NR	rs9257248-T	0.114	4E-11		0.0123	[0.0086-0.016] unit decrease	NR [7666894] (imputed)	N
585	chr6_dbb_hap3	106700	106701	rs9257248	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p22.1	LOC442181, LOC401242	rs9257248-A	0.217	7E-20				Illumina [118177]	N
585	chr6_dbb_hap3	120130	120131	rs561122079	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	6p22.1	XXbac-BPG308K3.5	rs561122079-T	0.0012	5E-6		1.4759	[0.84-2.11] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
585	chr6_dbb_hap3	124504	124505	rs9257270	32592749	Butler-Laporte G	2020-06-24	Clin Microbiol Infect	Elevated body-mass index is associated with an increased risk of infectious disease admissions and mortality: a mendelian randomization study.	Sepsis (hospital admission)	4,403 European ancestry cases, 17,612 European ancestry controls	NA	6p22.1	ZFP57	rs9257270-A	0.8	2E-8		0.018	[0.012-0.024] unit increase	NR [NR]	N
586	chr6_dbb_hap3	134250	134259	rs71554969	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p22.1	XXbac-BPG308K3.6	rs71554969-C	NR	8E-12		0.0218335	[0.016-0.028] unit decrease	Affymetrix [323123] (imputed)	N
586	chr6_dbb_hap3	135020	135021	rs3131336	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	6p22.1	TRIM27	rs3131336-C	0.882895	2E-18		0.019064	[0.015-0.023] unit decrease	Affymetrix [12370749]	N
586	chr6_dbb_hap3	136553	136557	rs138792987	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Inguinal hernia	16,725 European ancestry cases, 428,356 European ancestry controls, 1,664 East Asian ancestry cases, 177,062 East Asian ancestry controls	NA	6p22.1		rs138792987-G	NR	8E-11		0.1283	[0.09-0.167] unit decrease	Affymetrix, Illumina [25841416] (imputed)	N
586	chr6_dbb_hap3	247496	247497	rs3130887	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Polyunsaturated fatty acid levels	115,006 European ancestry individuals	NA	6p22.1		rs3130887-G	0.881305	8E-10		0.0379668	[0.026-0.05] unit increase	NR [11722792] (imputed)	N
586	chr6_dbb_hap3	257703	257704	rs3129791	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p22.1	NR	rs3129791-A	0.1148	2E-11		0.0125	[0.0088-0.0162] unit decrease	NR [7666894] (imputed)	N
587	chr6_dbb_hap3	268922	268923	rs114357009	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	6p22.1	C6orf100, HCG14, LOC401242, LOC100129636, OR2B3, OR2H1, OR2J2, OR2J3, OR2W1, OR5V1, OR10C1, OR11A1, OR12D2, OR12D3, OR14J1, TRIM27, ZNF311	rs114357009-A	0.049997	2E-10		1.1579555	[1.11-1.2]	Affymetrix [8274727] (imputed)	N
587	chr6_dbb_hap3	276908	276909	rs77514138	32227112	Lee MA	2020-03-30	Hum Mol Genet	Common variation at 16p11.2 is associated with glycosuria in pregnancy: Findings from a genome-wide association study in European women.	Glycosuria in pregnancy (offspring genotype effect)	747 European ancestry cases, 2,991 European ancestry controls	NA	6p22.1	NR	rs77514138-T	0.01849013	2E-9		3.6386764	[3.217150999-4.060201879]	Illumina [9873828] (imputed)	N
587	chr6_dbb_hap3	284117	284118	rs3130893	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium HDL	115,082 European ancestry individuals	NA	6p22.1		rs3130893-A	0.880989	2E-10		0.037629	[0.026-0.049] unit increase	NR [11722792] (imputed)	N
587	chr6_dbb_hap3	284117	284118	rs3130893	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-6 fatty acid levels	115,006 European ancestry individuals	NA	6p22.1		rs3130893-A	0.880993	9E-9		0.0356831	[0.024-0.048] unit increase	NR [11722792] (imputed)	N
587	chr6_dbb_hap3	284117	284118	rs3130893	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Linoleic acid levels	115,006 European ancestry individuals	NA	6p22.1		rs3130893-A	0.880993	5E-9		0.0364876	[0.024-0.049] unit increase	NR [11722792] (imputed)	N
587	chr6_dbb_hap3	286684	286685	rs3131082	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p22.1	NR	rs3131082-?	NR	2E-7		0.1949	[0.12-0.27] unit decrease	Illumina [at least 560000] (imputed)	N
587	chr6_dbb_hap3	288165	288166	rs3129795	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs3129795-?		8E-6		1.0526316	[1.03-1.08]	Illumina [7645193] (imputed)	N
587	chr6_dbb_hap3	288165	288166	rs3129795	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs3129795-?		2E-6		1.6129031	[1.32-1.96]	Illumina [7645193] (imputed)	N
587	chr6_dbb_hap3	295569	295570	rs3129797	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	6p22.1	ZNF311	rs3129797-C	0.882471	2E-20		0.0273248	[0.022-0.033] unit increase	Affymetrix [NR] (imputed)	N
587	chr6_dbb_hap3	329997	329998	rs114631266	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p22.1	OR2W1	rs114631266-C	0.974	2E-6		0.284	[0.17-0.4] unit increase	Affymetrix, Illumina [7374092] (imputed)	N
587	chr6_dbb_hap3	331339	331340	rs114415956	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	OR2P1P	rs114415956-T	NR	3E-10		0.0401608	[0.028-0.053] unit decrease	Affymetrix [321016] (imputed)	N
587	chr6_dbb_hap3	334352	334352	rs559462124	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs559462124-?		5E-9	(Average across all tracts)			NR [8955960] (imputed)	N
587	chr6_dbb_hap3	334352	334352	rs559462124	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs559462124-?		3E-9	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
587	chr6_dbb_hap3	334352	334352	rs559462124	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs559462124-?		2E-9	(Posterior corona radiata )			NR [8955960] (imputed)	N
587	chr6_dbb_hap3	334352	334352	rs559462124	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs559462124-?		2E-8	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
587	chr6_dbb_hap3	334352	334352	rs559462124	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs559462124-?		2E-8	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
587	chr6_dbb_hap3	334352	334352	rs559462124	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs559462124-?		2E-8	(Cingulate gyrus)			NR [8955960] (imputed)	N
587	chr6_dbb_hap3	334352	334352	rs559462124	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs559462124-?		6E-11	(Posterior corona radiata )			NR [8955960] (imputed)	N
587	chr6_dbb_hap3	334352	334352	rs559462124	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs559462124-?		4E-8	(Cingulate gyrus)			NR [8955960] (imputed)	N
587	chr6_dbb_hap3	334352	334352	rs559462124	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs559462124-?		4E-11	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
587	chr6_dbb_hap3	334352	334352	rs559462124	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs559462124-?		2E-8	(Average across all tracts)			NR [8955960] (imputed)	N
587	chr6_dbb_hap3	334352	334352	rs559462124	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs559462124-?		2E-10	(Superior corona radiata)			NR [8955960] (imputed)	N
587	chr6_dbb_hap3	334352	334352	rs559462124	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	6p22.1	NR	rs559462124-?		2E-8	(Average across all tracts)			NR [8955960] (imputed)	N
587	chr6_dbb_hap3	334352	334352	rs559462124	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs559462124-?		4E-8	(Posterior corona radiata )			NR [8955960] (imputed)	N
587	chr6_dbb_hap3	334352	334352	rs559462124	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs559462124-?		3E-8	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
587	chr6_dbb_hap3	348109	348110	rs3131085	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p22.1	GABBR1, OR12D3, XXbac-BPG308K3.5, TRIM27, AL662791.1, OR2AD1P, OR2P1P, OR2B3, XXbac-BCX196D17.5, OR2N1P, OR2H4P, OR2B4P, XXbac-BPG308K3.6, RPL13P, ZNF90P2, HCG14, RNU6-930P, LINC01556, KRT18P1, RN7SL471P, HCG15, HCG16, ZNF311, XXbac-BPG258E24.10, OR2W1, SAR1P1, OR2J3, OR2J4P, OR2J2, AL645937.1, XXbac-BPG308J9.3, OR2U2P, OR14J1, OR5V1, OR10C1, OR11A1, XXbac-BPG13B8.11, OR2H1, UBDP1, MAS1LP1, MAS1L, RPS17P1, XXbac-BPG13B8.10, OR2I1P, UBD	rs3131085-A	0.07580321	1E-9	(EA, MHC class I polypeptide-related sequence A)	0.5111	[0.35-0.67] unit increase	Affymetrix [509946]	N
587	chr6_dbb_hap3	352097	352098	rs3129787	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129787-?		6E-11	(Posterior corona radiata )			NR [8955960] (imputed)	N
587	chr6_dbb_hap3	352097	352098	rs3129787	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129787-?		4E-11	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
587	chr6_dbb_hap3	352097	352098	rs3129787	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129787-?		3E-8	(Cingulate gyrus)			NR [8955960] (imputed)	N
587	chr6_dbb_hap3	352097	352098	rs3129787	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129787-?		5E-9	(Cingulate gyrus)			NR [8955960] (imputed)	N
587	chr6_dbb_hap3	352097	352098	rs3129787	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129787-?		5E-12	(Posterior corona radiata )			NR [8955960] (imputed)	N
587	chr6_dbb_hap3	352097	352098	rs3129787	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129787-?		2E-8	(Anterior corona radiata)			NR [8955960] (imputed)	N
587	chr6_dbb_hap3	352097	352098	rs3129787	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129787-?		2E-12	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
587	chr6_dbb_hap3	352097	352098	rs3129787	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129787-?		3E-9	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
587	chr6_dbb_hap3	352097	352098	rs3129787	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129787-?		5E-8	(Posterior corona radiata )			NR [8955960] (imputed)	N
587	chr6_dbb_hap3	355666	355666	rs11275996	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs11275996-?		4E-8	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
587	chr6_dbb_hap3	355666	355666	rs11275996	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs11275996-?		7E-9	(Superior corona radiata)			NR [8955960] (imputed)	N
587	chr6_dbb_hap3	361047	361048	rs3129788	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p22.1	OR2B3P, OR2J3	rs3129788-A	0.217	7E-19				Illumina [118177]	N
587	chr6_dbb_hap3	365959	365960	rs115166140	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p22.1	NR	rs115166140-?	NR	1E-9		0.1623	[0.11-0.21] unit increase	Illumina [at least 560000] (imputed)	N
587	chr6_dbb_hap3	368400	368401	rs4463283	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p22.1	OR2B3, OR2J3	rs4463283-A	0.06	1E-6	(EA)	2.61	[1.74-3.90]	Illumina [up to 547389]	N
587	chr6_dbb_hap3	378501	378502	rs3129178	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p22.1	NR	rs3129178-A	0.0951	6E-9	(EA)	0.0669	[0.044-0.089] unit decrease	Illumina [~ 11800000] (imputed)	N
587	chr6_dbb_hap3	384570	384571	rs3129106	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p22.1	NR	rs3129106-?	NR	7E-6		0.0757	[0.043-0.109] unit decrease	Illumina [at least 560000] (imputed)	N
587	chr6_dbb_hap3	385631	385632	rs115328582	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	OR2J3	rs115328582-G	NR	4E-14		0.033147	[0.025-0.042] unit decrease	Affymetrix [321016] (imputed)	N
587	chr6_dbb_hap3	387640	387641	rs3129109	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	6p22.1	OR2J3	rs3129109-T	0.39	2E-17		0.032	[NR] unit decrease	Affymetrix, Illumina [2834208] (imputed)	N
588	chr6_dbb_hap3	406268	406269	rs3129119	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129119-?		3E-11	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
588	chr6_dbb_hap3	406268	406269	rs3129119	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129119-?		2E-8	(Superior corona radiata)			NR [8955960] (imputed)	N
588	chr6_dbb_hap3	406268	406269	rs3129119	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129119-?		2E-11	(Superior corona radiata)			NR [8955960] (imputed)	N
588	chr6_dbb_hap3	406268	406269	rs3129119	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129119-?		1E-9	(Retrolenticular part of internal capsule)			NR [8955960] (imputed)	N
588	chr6_dbb_hap3	415186	415187	rs3129120	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Major depressive disorder (lifetime)	16,301 British ancestry cases, 50,870 British ancestry controls	NA	6p22.1	NR	rs3129120-?	NR	4E-7		1.1049724	[1.06-1.15]	NR [5276842] (imputed)	N
588	chr6_dbb_hap3	415186	415187	rs3129120	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Help-seeking from a psychiatrist	36,286 British ancestry cases, 297,126 British ancestry controls	NA	6p22.1	NR	rs3129120-T	0.876	1E-10		1.081081	NR	NR [5276842] (imputed)	N
588	chr6_dbb_hap3	422157	422158	rs3130725	27668658	Iotchkova V	2016-11-01	Nat Genet	Discovery and refinement of genetic loci associated with cardiometabolic risk using dense imputation maps.	Cardiometabolic and hematological traits	up to 35,981 European ancestry individuals	up to 102,505 European ancestry individuals	6p22.1	ZNF311	rs3130725-G		3E-26	(WBC)	0.008	[0.006-0.01] unit decrease	Affymetrix, Illumina [17000000] (imputed)	N
588	chr6_dbb_hap3	429909	429910	rs62405961	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	OR2J2	rs62405961-A	NR	2E-8		0.0707669	[0.046-0.095] unit decrease	Affymetrix [321016] (imputed)	N
588	chr6_dbb_hap3	433690	433691	rs3129137	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129137-?		3E-8	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
588	chr6_dbb_hap3	437056	437057	rs4947263	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p22.1	NR	rs4947263-T	0.1178	3E-12		0.0127	[0.0092-0.0162] unit decrease	NR [7666894] (imputed)	N
588	chr6_dbb_hap3	439211	439216	rs369812099	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	6p22.1		rs369812099-T	NR	3E-8		0.0145	[0.0094-0.0196] unit increase	Affymetrix, Illumina [20535873] (imputed)	N
588	chr6_dbb_hap3	441729	441730	rs3129151	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	NR	rs3129151-?	NR	7E-8		5.388	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
588	chr6_dbb_hap3	442363	442364	rs3130740	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3130740-?		4E-9	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
588	chr6_dbb_hap3	445157	445158	rs3129157	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p22.1	OR2J2	rs3129157-A		3E-33		0.068	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
588	chr6_dbb_hap3	447954	447955	rs9257566	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	6p22.1	NR	rs9257566-?	NR	7E-30		1.2277772	[1.19-1.26]	Affymetrix, Illumina [12447948] (imputed)	N
588	chr6_dbb_hap3	449045	449046	rs9295795	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	6p22.1		rs9295795-T	0.94311	2E-8		0.026	[0.016-0.036] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
588	chr6_dbb_hap3	451127	451128	rs186983332	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p22.1	NR	rs186983332-?	NR	7E-6		0.2003	[0.11-0.29] unit decrease	Illumina [at least 560000] (imputed)	N
588	chr6_dbb_hap3	451827	451828	rs114503016	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p22.1		rs114503016-C	0.986	4E-13				Affymetrix [10369434] (imputed)	N
588	chr6_dbb_hap3	451827	451828	rs114503016	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p22.1		rs114503016-C	0.986	3E-16				Affymetrix [10369434] (imputed)	N
588	chr6_dbb_hap3	452864	452865	rs3116816	32595297	Kweon K	2018-04-01	Soa Chongsonyon Chongsin Uihak	Genome-Wide Analysis Reveals Four Novel Loci for Attention-Deficit Hyperactivity Disorder in Korean Youths.	Attention deficit hyperactivity disorder (inattention symptoms)	27 Korean ancestry child sibling pairs	NA	6p22.1	OR2J2, OR14J1	rs3116816-A	0.398	2E-7				Affymetrix [432921]	N
588	chr6_dbb_hap3	456581	456582	rs3130746	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p22.1	NR	rs3130746-?	NR	3E-6		0.1783	[0.1-0.25] unit increase	Illumina [at least 560000] (imputed)	N
588	chr6_dbb_hap3	459175	459176	rs3129171	32358547	Persyn E	2020-05-01	Nat Commun	Genome-wide association study of MRI markers of cerebral small vessel disease in 42,310 participants.	White matter integrity (fractional anisotropy)	17,663 European ancestry individuals	NA	6p22.1	ZFP57a, OR2J2, OR2H4P, XXbac-BPG308J9.3	rs3129171-A	0.242404	2E-9		0.294752	[0.2-0.39] unit increase	Affymetrix [NR] (imputed)	N
588	chr6_dbb_hap3	459175	459176	rs3129171	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129171-?		3E-9	(Retrolenticular part of internal capsule)			NR [8955960] (imputed)	N
588	chr6_dbb_hap3	459175	459176	rs3129171	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129171-?		3E-9	(Anterior corona radiata)			NR [8955960] (imputed)	N
588	chr6_dbb_hap3	459175	459176	rs3129171	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129171-?		2E-11	(Average across all tracts)			NR [8955960] (imputed)	N
588	chr6_dbb_hap3	459175	459176	rs3129171	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129171-?		9E-9	(Anterior corona radiata)			NR [8955960] (imputed)	N
588	chr6_dbb_hap3	459175	459176	rs3129171	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129171-?		4E-10	(Average across all tracts)			NR [8955960] (imputed)	N
588	chr6_dbb_hap3	459175	459176	rs3129171	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129171-?		2E-8	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
588	chr6_dbb_hap3	462009	462010	rs185008237	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	6p22.1	NR	rs185008237-?	NR	4E-6		0.0077326	[0.0045-0.011] unit increase	Affymetrix [805426] (imputed)	N
588	chr6_dbb_hap3	468482	468483	rs114224598	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling miserable	376,097 European ancestry individuals	NA	6p22.1	NR	rs114224598-A	0.0456381	3E-8		5.52	z score increase	NR [10847151] (imputed)	N
588	chr6_dbb_hap3	468482	468483	rs114224598	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p22.1	NR	rs114224598-?	NR	6E-9		0.175	[0.12-0.23] unit decrease	Illumina [at least 560000] (imputed)	N
588	chr6_dbb_hap3	483506	483507	rs139598127	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p22.1	NR	rs139598127-A	0.01045	2E-8	(SBDS)	0.06239	NR unit increase	Illumina [1671387] (imputed)	N
588	chr6_dbb_hap3	484165	484166	rs9257616	24047820	St Pourcain B	2013-09-18	Mol Autism	Common variation contributes to the genetic architecture of social communication traits.	Social communication problems	5,584 European ancestry children	1,364 European ancestry children	6p22.1	OR2J2, TRIM27, ZNF311, OR2W1, OR2B3, LOC651503, OR214J1, OR5V1, OR12D3, OR2J3	rs9257616-G	0.56	3E-7		0.093	[0.058-0.128] unit increase	Illumina [~ 2500000] (imputed)	N
588	chr6_dbb_hap3	509698	509699	rs3117342	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Cognitive traits (MTAG)	331,679 British ancestry individuals	NA	6p22.1		rs3117342-?	NR	2E-12				NR [7857346] (imputed)	N
588	chr6_dbb_hap3	510124	510125	rs3130820	29483656	Pardinas AF	2018-02-26	Nat Genet	Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.	Schizophrenia	40,675 European ancestry cases, 64,643 European ancestry controls	1,651 European ancestry cases, 4,111 cases, 142,717 European ancestry controls, 11,507 controls	6p22.1	xMHC	rs3130820-?	NR	2E-44		1.281	[1.25-1.32]	Illumina [8000000] (imputed)	N
588	chr6_dbb_hap3	514011	514012	rs3117340	30271922	Clifton EAD	2018-05-03	Commun Biol	Genome-wide association study for risk taking propensity indicates shared pathways with body mass index.	Smoking status (ever vs never smokers)	207,229 European ancestry ever smoker cases, 243,177 European ancestry never smoker controls	NA	6p22.1	NR	rs3117340-G	0.622344	9E-7		0.0051953	[0.0031-0.0073] unit increase	Affymetrix [7736308] (imputed)	N
588	chr6_dbb_hap3	514011	514012	rs3117340	30271922	Clifton EAD	2018-05-03	Commun Biol	Genome-wide association study for risk taking propensity indicates shared pathways with body mass index.	Self-reported risk-taking behaviour	113,882 European ancestry cases, 322,354 European ancestry controls	NA	6p22.1	OR14J1	rs3117340-G	0.62	7E-9		1.024	[1.016-1.033]	Affymetrix [7736308] (imputed)	N
588	chr6_dbb_hap3	514011	514012	rs3117340	30181555	Strawbridge RJ	2018-09-04	Transl Psychiatry	Genetics of self-reported risk-taking behaviour, trans-ethnic consistency and relevance to brain gene expression.	Self-reported risk-taking behaviour	83,677 British ancestry cases, 244,662 British ancestry controls	2,764 South Asian ancestry cases, 3,139 African Caribbean ancestry cases, 16,169 European ancestry cases, 3,866 mixed ancestry cases, 4,267 South Asian ancestry controls, 4,341 African Caribbean ancestry controls, 31,814 European ancestry controls, 5,988 mixed ancestry controls	6p22.1	NR	rs3117340-T	0.38	1E-8		0.03	[0.02-0.04] unit decrease	Affymetrix [NR] (imputed)	N
588	chr6_dbb_hap3	520929	520930	rs3117334	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	6p22.1	NR	rs3117334-T	0.501	7E-9		0.00785988	[0.0052-0.0105] unit increase	NR [~ 9732723] (imputed)	N
589	chr6_dbb_hap3	526912	526913	rs3130825	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p22.1		rs3130825-?	NR	2E-9		0.0208387	[0.015-0.027] unit decrease	Affymetrix [20259828] (imputed)	N
589	chr6_dbb_hap3	527330	527331	rs149016863	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs149016863-?		3E-6		1.74	[1.38-2.20]	Illumina [7645193] (imputed)	N
589	chr6_dbb_hap3	528444	528445	rs149702363	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma and major depressive disorder	46,802 European ancestry asthma cases, 59,851 European ancestry major depressive disorder cases, 460,635 European ancestry controls	NA	6p22.1	OR2H1, OR5V1, OR10C1, OR11A1, OR12D2, OR12D3, OR14J1	rs149702363-?	NR	4E-10				Affymetrix [up to 13554551] (imputed)	N
589	chr6_dbb_hap3	533548	533549	rs566858049	30181555	Strawbridge RJ	2018-09-04	Transl Psychiatry	Genetics of self-reported risk-taking behaviour, trans-ethnic consistency and relevance to brain gene expression.	Self-reported risk-taking behaviour	83,677 British ancestry cases, 244,662 British ancestry controls	2,764 South Asian ancestry cases, 3,139 African Caribbean ancestry cases, 16,169 European ancestry cases, 3,866 mixed ancestry cases, 4,267 South Asian ancestry controls, 4,341 African Caribbean ancestry controls, 31,814 European ancestry controls, 5,988 mixed ancestry controls	6p22.1	HLA	rs566858049-T	0.6	7E-9		0.031	[0.021-0.041] unit increase	Affymetrix [NR] (imputed)	N
589	chr6_dbb_hap3	547637	547638	rs144447022	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	6p22.1		rs144447022-?	NR	4E-9				NR [NR]	N
589	chr6_dbb_hap3	547637	547638	rs144447022	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	67,764 individuals	NA	6p22.1	NR	rs144447022-?		9E-28				NR [8377093]	N
589	chr6_dbb_hap3	547637	547638	rs144447022	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms (MTAG)	955,012 individuals	NA	6p22.1	NR	rs144447022-?		3E-12				NR [520857]	N
589	chr6_dbb_hap3	547637	547638	rs144447022	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Bipolar disorder (MTAG)	65,682 individuals	NA	6p22.1	NR	rs144447022-?		7E-20				NR [520857]	N
589	chr6_dbb_hap3	547637	547638	rs144447022	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	6p22.1	XXbac-BPG308J9.3	rs144447022-T	NR	1E-13		0.036134973	[0.027-0.046] unit increase	Affymetrix [NR]	N
589	chr6_dbb_hap3	547637	547638	rs144447022	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	6p22.1	NR	rs144447022-G	NR	2E-28		1.25	[NR]	Illumina [7158791] (imputed)	N
589	chr6_dbb_hap3	551566	551567	rs3130834	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p22.1	NR	rs3130834-C	0.0955	5E-9	(EA)	0.0672	[0.045-0.09] unit decrease	Illumina [~ 11800000] (imputed)	N
589	chr6_dbb_hap3	551982	551982	rs5875188	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p22.1	OR2J2, OR14J1	rs5875188-?	0.06	7E-6	(EA)	2.52	[1.66-3.83]	Illumina [up to 547389]	N
589	chr6_dbb_hap3	556175	556176	rs116466121	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	6p22.1	Intergenic	rs116466121-A	0.8753	8E-9	(MTAG)	0.0156	[0.01-0.021] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
589	chr6_dbb_hap3	556175	556176	rs116466121	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	6p22.1	Intergenic	rs116466121-A	0.8759	2E-12	(MTAG)	0.0177	[0.013-0.023] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
589	chr6_dbb_hap3	558399	558400	rs9257681	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p22.1	NR	rs9257681-G	0.1151	2E-12		0.0131	[0.0094-0.0168] unit decrease	NR [7666894] (imputed)	N
589	chr6_dbb_hap3	559478	559478	rs6149499	30093612	O'Mara TA	2018-08-09	Nat Commun	Identification of nine new susceptibility loci for endometrial cancer.	Endometrial cancer (endometrioid histology)	8,758 European ancestry cases, 46,126 European ancestry controls	NA	6p22.1	LOC101929006, LOC105375005	rs6149499-G	0.870856	6E-7		1.16	[1.09-1.23]	Affymetrix, Illumina [~ 11700000] (imputed)	N
589	chr6_dbb_hap3	559856	559857	rs1884123	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	6p22.1	OR14J1	rs1884123-A	0.3614	3E-8		0.011205866	[0.0072-0.0152] unit decrease	Illumina [9339358] (imputed)	N
589	chr6_dbb_hap3	561403	561404	rs1033568	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA		NR	rs1033568-A	0.429	1E-6		1.081	[1.05-1.11]	Illumina [11270530] (imputed)	N
589	chr6_dbb_hap3	563867	563868	rs3117425	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	6p22.1	NR	rs3117425-T	NR	2E-8		0.02019	[0.013-0.027] unit decrease	Affymetrix [10847151] (imputed)	N
589	chr6_dbb_hap3	563867	563868	rs3117425	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling nervous	373,121 European ancestry individuals	NA	6p22.1	ZNF391	rs3117425-T	0.119369	5E-8		5.47	z score decrease	NR [10847151] (imputed)	N
589	chr6_dbb_hap3	575462	575463	rs3117426	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3117426-?		4E-10	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
589	chr6_dbb_hap3	575462	575463	rs3117426	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3117426-?		2E-8	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
589	chr6_dbb_hap3	575462	575463	rs3117426	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3117426-?		1E-9	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
589	chr6_dbb_hap3	575462	575463	rs3117426	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3117426-?		4E-8	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
589	chr6_dbb_hap3	577586	577587	rs3117427	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Receptor for advanced glycosylation end products levels	21,758 European ancestry individuals	9,173 individuals	6p22.1		rs3117427-T	0.9	2E-11		0.0988	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
589	chr6_dbb_hap3	578678	578679	rs61735224	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p22.1	NR	rs61735224-T	0.01045	2E-8	(SBDS)	0.06239	NR unit increase	Illumina [1671387] (imputed)	N
589	chr6_dbb_hap3	587123	587124	rs3129682	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p22.1	GABBR1, OR12D3, XXbac-BPG308K3.5, TRIM27, AL662791.1, OR2AD1P, OR2P1P, OR2B3, XXbac-BCX196D17.5, OR2N1P, OR2H4P, OR2B4P, XXbac-BPG308K3.6, RPL13P, ZNF90P2, HCG14, RNU6-930P, LINC01556, KRT18P1, RN7SL471P, HCG15, HCG16, ZNF311, XXbac-BPG258E24.10, OR2W1, SAR1P1, OR2J3, OR2J4P, OR2J2, AL645937.1, XXbac-BPG308J9.3, OR2U2P, OR14J1, OR5V1, OR10C1, OR11A1, XXbac-BPG13B8.11, OR2H1, UBDP1, MAS1LP1, MAS1L, RPS17P1, XXbac-BPG13B8.10, OR2I1P, UBD	rs3129682-T	0.07742915	1E-19	(EA, MHC class I polypeptide-related sequence B)	0.7369	[0.58-0.89] unit decrease	Affymetrix [509946]	N
589	chr6_dbb_hap3	587412	587412	rs201452814	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-17 levels	7,760 Finnish ancestry individuals	NA	6p22.1	NR	rs201452814-GT		4E-6		0.2398	[0.14-0.34] SD units increase	NR [10700000] (imputed)	N
589	chr6_dbb_hap3	587412	587412	rs201452814	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Fibroblast growth factor basic levels	7,565 Finnish ancestry individuals	NA	6p22.1	NR	rs201452814-GT		4E-6		0.242	[0.14-0.34] SD units increase	NR [10700000] (imputed)	N
589	chr6_dbb_hap3	603725	603726	rs146977025	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p22.1	NR	rs146977025-T	0.01045	2E-8	(SBDS)	0.06239	NR unit increase	Illumina [1671387] (imputed)	N
589	chr6_dbb_hap3	605481	605482	rs6903989	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	6p22.1	NR	rs6903989-C		2E-8		0.07	[0.05-0.09] unit increase	NR [NR]	N
589	chr6_dbb_hap3	610107	610108	rs9257745	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	DDX6P1	rs9257745-T	NR	8E-10		0.0256365	[0.017-0.034] unit decrease	Affymetrix [321016] (imputed)	N
589	chr6_dbb_hap3	618416	618417	rs7745768	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	6p22.1	NR	rs7745768-?	NR	8E-7		0.131782	[0.08-0.184] unit increase	NR [13958389] (imputed)	N
589	chr6_dbb_hap3	620629	620630	rs148466862	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	6p22.1		rs148466862-?	NR	5E-12		0.0507	unit increase	NR [NR]	N
589	chr6_dbb_hap3	620629	620630	rs148466862	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Subjective well-being (MTAG)	388,538 European ancestry individuals	NA	6p22.1	NR	rs148466862-T	0.0411	8E-12		0.0324	[0.023-0.042] unit decrease	Illumina [NR] (imputed)	N
589	chr6_dbb_hap3	620629	620630	rs148466862	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Neuroticism (MTAG)	168,105 European ancestry individuals	NA	6p22.1	NR	rs148466862-T	0.0463	5E-10		0.0438	[0.03-0.058] unit increase	Illumina [NR] (imputed)	N
589	chr6_dbb_hap3	620629	620630	rs148466862	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms (MTAG)	354,862 European ancestry individuals	NA	6p22.1	NR	rs148466862-T	0.0425	1E-10		0.0343	[0.024-0.045] unit increase	Illumina [NR] (imputed)	N
589	chr6_dbb_hap3	640528	640529	rs3930883	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p22.1		rs3930883-G	0.357	7E-41				Affymetrix [10369434] (imputed)	N
589	chr6_dbb_hap3	644198	644199	rs9257800	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Pork consumption	335,576 European ancestry individuals	NA	6p22.1	LRRC16A, SCGN, SLC17A4, SLC17A1	rs9257800-?	NR	7E-11		0.0040428	[-0.00326-0.01135] unit decrease	Affymetrix [25921788] (imputed)	N
589	chr6_dbb_hap3	644198	644199	rs9257800	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Oily fish consumption	335,576 European ancestry individuals	NA	6p22.1	LRRC16A, SCGN, SLC17A4, SLC17A1, SLC17A3, SLC17A2	rs9257800-?	NR	7E-11		0.0241753	[0.017-0.031] unit increase	Affymetrix [25921788] (imputed)	N
589	chr6_dbb_hap3	644462	644463	rs7772982	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	OR5V1	rs7772982-C	NR	7E-9		0.0217566	[0.014-0.029] unit decrease	Affymetrix [321016] (imputed)	N
589	chr6_dbb_hap3	646230	646231	rs3749971	33909500	Moll M	2021-04-28	Am J Physiol Lung Cell Mol Physiol	A Systematic Analysis of Protein-altering Exonic Variants in Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease	up to 31,465 European ancestry cases, up to 203,688 European ancestry controls, up to 1,413 African ancestry cases, up to 6,080 African ancestry controls, up to 287 East Asian ancestry cases, up to 7,484 East Asian ancestry controls, up to 61 Hispanic cases, up to 613 Hispanic controls	NA	6p22.1	OR12D3	rs3749971-A	0.12	3E-11		1.11	[1.08 -1.14]	Illumina [at least 109036]	N
589	chr6_dbb_hap3	646230	646231	rs3749971	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p22.1	OR12D3	rs3749971-A		2E-38		0.045	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
589	chr6_dbb_hap3	646230	646231	rs3749971	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	6p22.1	NR	rs3749971-A	NR	3E-9		5.929	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
589	chr6_dbb_hap3	646810	646811	rs9257802	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	OR5V1	rs9257802-T	NR	6E-12		0.026998	[0.019-0.035] unit decrease	Affymetrix [323858] (imputed)	N
589	chr6_dbb_hap3	646810	646811	rs9257802	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	OR5V1	rs9257802-T	NR	2E-11		0.0261971	[0.019-0.034] unit decrease	Affymetrix [127266] (imputed)	N
589	chr6_dbb_hap3	646810	646811	rs9257802	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p22.1	OR5V1	rs9257802-T	NR	7E-9		0.0225586	[0.015-0.03] unit decrease	Affymetrix [323858] (imputed)	N
589	chr6_dbb_hap3	646810	646811	rs9257802	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	6p22.1	NR	rs9257802-?		3E-8	(Anterior corona radiata)			NR [8955960] (imputed)	N
589	chr6_dbb_hap3	646810	646811	rs9257802	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	OR5V1	rs9257802-T	NR	7E-11		6.531	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
589	chr6_dbb_hap3	649677	649678	rs238883	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p22.1	OR5V1	rs238883-G	NR	7E-10		0.0202353	[0.014-0.027] unit decrease	Affymetrix [323123] (imputed)	N
589	chr6_dbb_hap3	649677	649678	rs238883	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Non-Hodgkin's lymphoma	2,400 European ancestry cases, 410,350 European ancestry controls	NA	6p22.1		rs238883-A	NR	3E-7		1.177995	NR	Affymetrix [7846216] (imputed)	N
589	chr6_dbb_hap3	649677	649678	rs238883	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p22.1	OR5V1	rs238883-A	0.6771	1E-7		0.0371	[0.023-0.051] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
589	chr6_dbb_hap3	654709	654710	rs576800986	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	6p22.1	OR5V1	rs576800986-A	0.0016	8E-6		0.994	[0.56-1.43] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
589	chr6_dbb_hap3	655230	655231	rs9378134	23393555	Jensen RA	2013-02-05	PLoS One	Genome-wide association study of retinopathy in individuals without diabetes.	Retinopathy in non-diabetics	19,411 European ancestry individuals	NA	6p22.1	OR12D3	rs9378134-A	0.04	3E-6		0.49	[0.29-0.69] unit increase	Illumina [2675979] (imputed)	N
590	chr6_dbb_hap3	658566	658567	rs238869	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	OR5V1	rs238869-C	NR	4E-8		0.0177413	[0.011-0.024] unit decrease	Affymetrix [323858] (imputed)	N
590	chr6_dbb_hap3	658566	658567	rs238869	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	OR5V1	rs238869-C	NR	2E-8		0.0181435	[0.012-0.024] unit decrease	Affymetrix [127266] (imputed)	N
590	chr6_dbb_hap3	658566	658567	rs238869	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6p22.1	OR5V1	rs238869-C	NR	2E-9		0.0190121	[0.013-0.025] unit decrease	Affymetrix [321114] (imputed)	N
590	chr6_dbb_hap3	658566	658567	rs238869	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	6p22.1	NR	rs238869-C	0.3771	3E-8		1.0341262	[1.02-1.05]	Affymetrix, Illumina [NR] (imputed)	N
590	chr6_dbb_hap3	658601	658602	rs3094549	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	OR5V1	rs3094549-C	NR	9E-18		0.0266542	[0.021-0.033] unit decrease	Affymetrix [321016] (imputed)	N
590	chr6_dbb_hap3	658601	658602	rs3094549	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p22.1	OR5V1	rs3094549-C	NR	3E-10		0.0212798	[0.015-0.028] unit decrease	Affymetrix [323123] (imputed)	N
590	chr6_dbb_hap3	658655	658656	rs3094548	21946350	Soler Artigas M	2011-09-25	Nat Genet	Genome-wide association and large-scale follow up identifies 16 new loci influencing lung function.	Pulmonary function	48,201 European ancestry individuals	46,411 European ancestry individuals	6p22.1	OR12D2	rs3094548-G	NR	1E-7	(FEV1)	0.029	[0.019-0.039] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
590	chr6_dbb_hap3	658671	658673	rs34671475	32227112	Lee MA	2020-03-30	Hum Mol Genet	Common variation at 16p11.2 is associated with glycosuria in pregnancy: Findings from a genome-wide association study in European women.	Glycosuria in pregnancy (offspring genotype effect)	747 European ancestry cases, 2,991 European ancestry controls	NA	6p22.1	NR	rs34671475-C	0.03003544	3E-8		2.608679	[2.269056177-2.948302017]	Illumina [9873828] (imputed)	N
590	chr6_dbb_hap3	658730	658731	rs74294664	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	150,266 East Asian ancestry individuals	NA	6p22.1		rs74294664-A	0.075018	4E-26		0.0570823	[0.046-0.068] unit increase	Illumina [13478778] (imputed)	N
590	chr6_dbb_hap3	659784	659785	rs9257809	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p22.1	NR	rs9257809-G	0.1004	3E-8	(EA)	0.0627	[0.041-0.085] unit decrease	Illumina [~ 11800000] (imputed)	N
590	chr6_dbb_hap3	659784	659785	rs9257809	27527254	Gharahkhani P	2016-08-12	Lancet Oncol	Genome-wide association studies in oesophageal adenocarcinoma and Barrett's oesophagus: a large-scale meta-analysis.	Barrett's esophagus  or Esophageal adenocarcinoma	6,167 European ancestry Barrett's oesophagus cases, 4,112 European ancestry esophageal adenocarcinoma cases, 17,159 European ancestry controls	NA	6p22.1	MHC	rs9257809-A		6E-9		1.23	[1.14-1.31]	Illumina [11951684] (imputed)	N
590	chr6_dbb_hap3	659784	659785	rs9257809	27527254	Gharahkhani P	2016-08-12	Lancet Oncol	Genome-wide association studies in oesophageal adenocarcinoma and Barrett's oesophagus: a large-scale meta-analysis.	Barrett's esophagus	6,167 European ancestry cases, 17,159 European ancestry controls	NA	6p22.1	MHC	rs9257809-A		6E-9		1.2634	[1.18-1.34]	Illumina [11942825] (imputed)	N
590	chr6_dbb_hap3	659784	659785	rs9257809	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p22.1	OR12D3, OR12D2	rs9257809-G	0.233	1E-20				Illumina [118177]	N
590	chr6_dbb_hap3	659784	659785	rs9257809	22961001	Su Z	2012-09-09	Nat Genet	Common variants at the MHC locus and at chromosome 16q24.1 predispose to Barrett's esophagus.	Barrett's esophagus	Up to 1,852 European ancestry cases, 5,172 European ancestry controls	5,986 European ancestry cases, 12,825 European ancestry controls	6p22.1	OR2D12, OR2D13, MHC	rs9257809-A	0.87	4E-9		1.21	[1.13-1.28]	Illumina [521744]	N
590	chr6_dbb_hap3	660040	660041	rs379157	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6p22.1	OR5V1	rs379157-G	NR	5E-8		0.0168887	[0.011-0.023] unit decrease	Affymetrix [321114] (imputed)	N
590	chr6_dbb_hap3	660040	660041	rs379157	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	6p22.1	NR	rs379157-?	NR	2E-9	(MIC-A)	0.426671	[0.29-0.57] unit decrease	Illumina [11901634] (imputed)	N
590	chr6_dbb_hap3	668739	668740	rs2073149	35215271	Almandil NB	2022-01-27	Pharmaceuticals (Basel)	Integration of Transcriptome and Exome Genotyping Identifies Significant Variants with Autism Spectrum Disorder.	Autism spectrum disorder	70 Arab ancestry cases, 132 Arab ancestry controls	NA	6p22.1	NA	rs2073149-A	0.5795	9E-9		0.2367	[0.143-0.3918]	Illumina [243345]	N
590	chr6_dbb_hap3	669422	669423	rs7775217	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Treatment or medication use - levothyroxine sodium (UKB data field 20003_1141191044)	18,688 European ancestry cases, 437,588 European ancestry controls	NA	6p22.1		rs7775217-A	0.007711	3E-13		0.46	[0.33-0.59] unit increase	NR [11842647] (imputed)	N
590	chr6_dbb_hap3	675647	675648	rs429479	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	6p22.1	OR12D2	rs429479-A	0.9041	2E-12		0.0471	[0.034-0.06] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
590	chr6_dbb_hap3	675647	675648	rs429479	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	OR5V1	rs429479-A	NR	5E-15		7.818	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
590	chr6_dbb_hap3	679660	679660	rs199997067	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mumps	31,227 European ancestry cases, 54,153 European ancestry controls	NA	6p22.1	NR	rs199997067-?	NR	5E-7		0.267	[0.16-0.37] unit decrease	Illumina [at least 560000] (imputed)	N
590	chr6_dbb_hap3	680990	680991	rs389931	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure in major depressive disorder-negative individuals	10,701 European ancestry cases, 39,677 European ancestry controls	NA	6p22.1	NR	rs389931-T	0.9064421	7E-6		1.1273957	[1.07-1.18]	Affymetrix [7791636] (imputed)	N
590	chr6_dbb_hap3	690313	690314	rs202217993	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Gynecologic disease	7,975 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs202217993-?		1E-8		1.18	[1.11-1.25]	Illumina [7645193] (imputed)	N
590	chr6_dbb_hap3	690313	690314	rs202217993	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Gynecologic disease	7,315 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs202217993-?		2E-9				Illumina [7645193] (imputed)	N
590	chr6_dbb_hap3	690340	690341	rs16894878	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	6p22.1	OR12D1P, OR11A1	rs16894878-A	0.001	1E-6		34.08	[3.52-329.69]	Illumina [1556551]	N
590	chr6_dbb_hap3	700203	700204	rs3128851	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	OR5V1, OR11A1	rs3128851-T	NR	9E-12		0.0207103	[0.015-0.027] unit decrease	Affymetrix [321016] (imputed)	N
590	chr6_dbb_hap3	702267	702268	rs3117191	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	6p22.1	Intergenic	rs3117191-T	NR	2E-6		0.022413	[0.013-0.032] unit decrease	Illumina [13520550] (imputed)	N
590	chr6_dbb_hap3	709217	709218	rs55740552	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p22.1	NR	rs55740552-?	NR	1E-10		0.1637	[0.11-0.21] unit decrease	Illumina [at least 560000] (imputed)	N
590	chr6_dbb_hap3	711419	711420	rs17177632	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	6p22.1		rs17177632-?	NR	5E-8				Affymetrix [NR] (imputed)	N
590	chr6_dbb_hap3	711419	711420	rs17177632	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p22.1		rs17177632-A	0.988	2E-8				Affymetrix [10369434] (imputed)	N
590	chr6_dbb_hap3	716332	716333	rs2023463	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in diabetes	70,762 European ancestry individuals, 20,967 African American individuals	NA	6p22.1	6M1-18	rs2023463-T	0.092	1E-11		1.01	[0.72-1.3] unit decrease	Affymetrix [NR] (imputed)	N
590	chr6_dbb_hap3	718793	718794	rs2523443	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p22.1	NR	rs2523443-A	0.1188	1E-12		0.013	[0.0095-0.0165] unit decrease	NR [7666894] (imputed)	N
590	chr6_dbb_hap3	735503	735504	rs2143668	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	6p22.1	OR2H1	rs2143668-A	0.8962	1E-7	(EA)	0.0033	[0.0021-0.0045] unit increase	Affymetrix [NR] (imputed)	N
590	chr6_dbb_hap3	735503	735504	rs2143668	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	6p22.1	OR2H1	rs2143668-A	0.896	1E-9		0.0033	[0.0021-0.0045] unit increase	Affymetrix [NR] (imputed)	N
590	chr6_dbb_hap3	737744	737745	rs4713226	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	UBDP1	rs4713226-A	NR	5E-10		0.0303439	[0.021-0.04] unit decrease	Affymetrix [321016] (imputed)	N
590	chr6_dbb_hap3	737744	737745	rs4713226	22610502	Kennedy RB	2012-05-19	Hum Genet	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IFN-alpha)	Up to 512 European ancestry individuals, up to 199 African American individuals	NA	6p22.1	OR2H1	rs4713226-A		2E-8	(AA)			Illumina [NR]	N
590	chr6_dbb_hap3	746305	746306	rs77454196	33002439	Jin G	2020-10-01	Lancet Oncol	Genetic risk, incident gastric cancer, and healthy lifestyle: a meta-analysis of genome-wide association studies and prospective cohort study.	Gastric cancer	10,254 Han Chinese ancestry cases, 10,914 Han Chinese ancestry controls	NA	6p22.1	NR	rs77454196-A	0.05	3E-6		0.78	NR	Affymetrix, Illumina [6957974] (imputed)	N
590	chr6_dbb_hap3	749032	749033	rs72500877	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	349,856 European ancestry individuals, 91,908 East Asian ancestry individuals	NA	6p22.1		rs72500877-T	NR	2E-9		0.0296	[0.02-0.039] unit increase	Affymetrix, Illumina [20529536] (imputed)	N
590	chr6_dbb_hap3	761571	761572	rs1233493	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs1233493-?		1E-8	(Superior corona radiata)			NR [8955960] (imputed)	N
590	chr6_dbb_hap3	761571	761572	rs1233493	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs1233493-?		3E-9	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
590	chr6_dbb_hap3	761571	761572	rs1233493	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in non-diabetics	152,624 European ancestry individuals, 36,369 African American individuals	NA	6p22.1	MAS1L	rs1233493-A	0.89	9E-9		0.481	[0.32-0.65] unit increase	Affymetrix [NR] (imputed)	N
590	chr6_dbb_hap3	765060	765061	rs1233491	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p22.1	MAS1L, LOC729653	rs1233491-C	0.23	1E-20				Illumina [118177]	N
590	chr6_dbb_hap3	765060	765061	rs1233491	25827949	Kunz M	2015-05-04	Exp Dermatol	Genome-wide association study identifies new susceptibility loci for cutaneous lupus erythematosus.	Cutaneous lupus erythematosus	151 European ancestry cases, 1,288 European ancestry controls	219 European ancestry cases, 262 European ancestry controls	6p22.1	MAS1L	rs1233491-C	0.088	8E-10		2.2	[1.58-3.08]	Affymetrix [906600]	N
590	chr6_dbb_hap3	773538	773539	rs1233485	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p22.1		rs1233485-T	0.731	7E-12				Affymetrix [10369434] (imputed)	N
590	chr6_dbb_hap3	774315	774316	rs3131019	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	6p22.1		rs3131019-?	NR	5E-8				Affymetrix [NR] (imputed)	N
590	chr6_dbb_hap3	780744	780745	rs1233480	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p22.1	NR	rs1233480-T	0.1095	5E-8	(EA)	0.0586	[0.037-0.08] unit decrease	Illumina [~ 11800000] (imputed)	N
590	chr6_dbb_hap3	783554	783555	rs385816	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p22.1	NR	rs385816-?	NR	5E-7		0.0742	[0.045-0.103] unit increase	Illumina [at least 560000] (imputed)	N
591	chr6_dbb_hap3	790612	790613	rs2523430	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p22.1		rs2523430-G	0.513	3E-9				Affymetrix [10369434] (imputed)	N
591	chr6_dbb_hap3	791298	791299	rs12210150	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	153,512 East Asian ancestry individuals	NA	6p22.1		rs12210150-T	0.038389	1E-12		0.0584816	[0.042-0.075] unit increase	Illumina [13479135] (imputed)	N
591	chr6_dbb_hap3	813964	813965	rs362538	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	6p22.1		rs362538-G	0.902	2E-109		0.4	[-0.44--0.36] % decrease	Affymetrix [NR] (imputed)	N
591	chr6_dbb_hap3	813964	813965	rs362538	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular hemoglobin	20,714 Amish, White ancestry individuals, 447 Asian ancestry individuals, 11,246 Black individuals, 13,834 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	6p22.1		rs362538-C	NR	3E-10		0.2	[0.14-0.26] unit increase	Illumina [94681438]	N
591	chr6_dbb_hap3	819147	819148	rs3094575	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	OR2I1P	rs3094575-T	NR	2E-8		0.0185304	[0.012-0.025] unit decrease	Affymetrix [321016] (imputed)	N
591	chr6_dbb_hap3	823198	823199	rs453658	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	121,047 East Asian ancestry individuals	NA	6p22.1	NR	rs453658-G	0.306783	4E-12		0.030549	[0.022-0.039] SD units decrease	Affymetrix, Illumina [16286195] (imputed)	N
591	chr6_dbb_hap3	824227	824228	rs16895057	23456168	Hao Y	2013-03-03	Hum Genet	Genome-wide association study in Han Chinese identifies three novel loci for human height.	Height	6,534 Han Chinese ancestry individuals	1,881 Han Chinese ancestry individuals from 637 families	6p22.1	OR2I1P	rs16895057-T	0.95	3E-6		0.153	[0.088-0.218] unit increase	Affymetrix [1532051] (imputed)	N
591	chr6_dbb_hap3	824669	824670	rs11724	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	6p22.1		rs11724-G	0.692447	2E-8		0.0220867	[0.014-0.03] unit increase	Illumina [13476299] (imputed)	N
591	chr6_dbb_hap3	827026	827027	rs8337	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p22.1	UBD	rs8337-C		1E-19		0.022	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
591	chr6_dbb_hap3	829727	829728	rs11970475	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	6p22.1	UBD	rs11970475-A	0.19	2E-24		0.07	[0.054-0.086] unit increase	Affymetrix, Illumina [2704730] (imputed)	N
591	chr6_dbb_hap3	834294	834295	rs422878	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	GABBR1	rs422878-T	NR	1E-8		0.0205792	[0.014-0.028] unit decrease	Affymetrix [321016] (imputed)	N
591	chr6_dbb_hap3	834294	834295	rs422878	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	6p22.1	UBD, OR2H2	rs422878-C	0.81	1E-8		5.72	z-score increase	Affymetrix [4311822] (imputed)	N
591	chr6_dbb_hap3	834324	834325	rs115070292	27922604	Yu H	2016-12-06	Mol Psychiatry	Common variants on 2p16.1, 6p22.1 and 10q24.32 are associated with schizophrenia in Han Chinese population.	Schizophrenia	4,384 Han Chinese ancestry cases and 5,770 Han Chinese ancestry controls	4,339 Han Chinese ancestry cases and 7,043 Han Chinese ancestry controls	6p22.1	GABBR1	rs115070292-?		5E-10		1.3	[1.22-1.38]	Illumina [at least 473583] (imputed)	N
591	chr6_dbb_hap3	837965	837966	rs413082	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	GABBR1	rs413082-A	NR	3E-8		0.0199613	[0.013-0.027] unit decrease	Affymetrix [321016] (imputed)	N
591	chr6_dbb_hap3	841565	841566	rs142818680	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mumps	31,227 European ancestry cases, 54,153 European ancestry controls	NA	6p22.1	NR	rs142818680-?	NR	7E-12		0.5892	[0.42-0.76] unit decrease	Illumina [at least 560000] (imputed)	N
591	chr6_dbb_hap3	843121	843122	rs3025652	31272903	Sunadome H	2019-07-01	Allergol Int	Correlation between eosinophil count, its genetic background and body mass index: The Nagahama Study.	Eosinophil counts	4,650 East Asian ancestry individuals	NA	6p22.1	NR	rs3025652-A	0.23	4E-7		0.1237	NR unit increase	Illumina [103680] (imputed)	N
591	chr6_dbb_hap3	850155	850156	rs1233396	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in HDL	115,082 European ancestry individuals	NA	6p22.1		rs1233396-G	0.861673	7E-10		0.0329165	[0.022-0.043] unit increase	NR [11722792] (imputed)	N
591	chr6_dbb_hap3	850155	850156	rs1233396	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium HDL	115,082 European ancestry individuals	NA	6p22.1		rs1233396-G	0.861673	3E-9		0.0327783	[0.022-0.044] unit increase	NR [11722792] (imputed)	N
591	chr6_dbb_hap3	851445	851446	rs926552	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	6p22.1	NA	rs926552-G		4E-10		0.0184243	[0.013-0.024] unit increase	Illumina [13288253] (imputed)	N
591	chr6_dbb_hap3	851445	851446	rs926552	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Major depressive disorder (lifetime)	16,301 British ancestry cases, 50,870 British ancestry controls	NA	6p22.1	NR	rs926552-G	0.86	4E-8		1.1074197	[1.07-1.14]	NR [5276842] (imputed)	N
591	chr6_dbb_hap3	851445	851446	rs926552	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking initiation (ever regular vs never regular)	up to 433,216 European ancestry individuals	NA	6p22.1	SNORD32B	rs926552-A	0.134	1E-8		0.0181	[0.012-0.024] unit decrease	Illumina [~ 250000] (imputed)	N
591	chr6_dbb_hap3	851445	851446	rs926552	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Diastolic blood pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	154,543 European ancestry individuals, 26,183 South Asian ancestry individuals	6p22.1	SNORD32B	rs926552-T	0.111	7E-8		0.26	[0.16-0.36] unit decrease	Illumina [247039]	N
591	chr6_dbb_hap3	853009	853010	rs1233393	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p22.1	NR	rs1233393-G	0.12	3E-7		1.13	[1.08-1.18]	Affymetrix [9886854] (imputed)	N
591	chr6_dbb_hap3	853009	853010	rs1233393	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p22.1	NR	rs1233393-G	0.12	2E-11			[NR]	Affymetrix [9886854] (imputed)	N
591	chr6_dbb_hap3	853009	853010	rs1233393	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p22.1	NR	rs1233393-G	0.12	2E-9		1.11	[1.07-1.15]	Affymetrix [9886854] (imputed)	N
591	chr6_dbb_hap3	853009	853010	rs1233393	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p22.1	NR	rs1233393-G	0.12	3E-11			[NR]	Affymetrix [9886854] (imputed)	N
591	chr6_dbb_hap3	853009	853010	rs1233393	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in non-current smokers	16,488 European ancestry cases, 169,688 European ancestry controls	NA	6p22.1	NR	rs1233393-G	0.12	2E-9		1.11	[1.07-1.15]	Affymetrix [9886854] (imputed)	N
591	chr6_dbb_hap3	853009	853010	rs1233393	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in never smokers	8,631 European ancestry cases, 120,544 European ancestry controls	NA	6p22.1	NR	rs1233393-G	0.12	2E-7		1.13	[1.08-1.18]	Affymetrix [9886854] (imputed)	N
591	chr6_dbb_hap3	853009	853010	rs1233393	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in ever smokers	12,446 European ancestry cases, 59,145 European ancestry controls	NA	6p22.1	NR	rs1233393-G	0.12	3E-6		1.11	[1.06-1.16]	Affymetrix [9886854] (imputed)	N
591	chr6_dbb_hap3	853009	853010	rs1233393	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p22.1	NR	rs1233393-G	0.1223	8E-13		0.0129	[0.0094-0.0164] unit decrease	NR [7666894] (imputed)	N
591	chr6_dbb_hap3	854772	854773	rs12524535	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Experiencing mood swings	373,733 European ancestry individuals	NA	6p22.1	TRIM27	rs12524535-A	0.0690112	8E-9		5.77	z score decrease	NR [10847151] (imputed)	N
591	chr6_dbb_hap3	859134	859135	rs2235698	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6p22.1		rs2235698-?	NR	2E-7		0.935071	[0.91-0.96]	NR [685523]	N
591	chr6_dbb_hap3	859134	859135	rs2235698	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	6p22.1	OR2H2	rs2235698-G	0.23	2E-10		6.36	z-score increase	Affymetrix [4312306] (imputed)	N
591	chr6_dbb_hap3	863836	863837	rs3095274	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p22.1		rs3095274-A	0.295	1E-10				Affymetrix [10369434] (imputed)	N
591	chr6_dbb_hap3	866423	866424	rs17508548	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	6p22.1	NR	rs17508548-?	NR	1E-8		0.02016	[0.013-0.027] unit increase	Affymetrix [10847151] (imputed)	N
591	chr6_dbb_hap3	868118	868119	rs56020557	28440896	Yin X	2017-04-25	Am J Med Genet B Neuropsychiatr Genet	Genome-wide meta-analysis identifies a novel susceptibility signal at CACNA2D3 for nicotine dependence.	Nicotine dependence	7,297 European ancestry cases, 5,577 European ancestry controls, 918 European ancestry whole genome sequenced cases, 921 European ancestry whole genome sequenced controls, African American cases, 1,500 African American controls	NA	6p22.1	GABBR1	rs56020557-T		5E-6	(EA)	0.05	[0.03-0.07] unit increase	Illumina [at least 3251541] (imputed)	N
591	chr6_dbb_hap3	868729	868730	rs28893517	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	6p22.1	NR	rs28893517-G	NR	5E-10		0.02848	[0.019-0.037] unit increase	Affymetrix [10847151] (imputed)	N
591	chr6_dbb_hap3	869438	869439	rs28986304	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	6p22.1	NR	rs28986304-T	NR	3E-9		5.932	z score decrease	Affymetrix [10847151] (imputed)	N
591	chr6_dbb_hap3	869438	869439	rs28986304	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	6p22.1	TRIM27	rs28986304-T	0.126444	8E-10		6.14	z score decrease	NR [10847151] (imputed)	N
591	chr6_dbb_hap3	870671	870672	rs28986306	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Depression	at least 5,919 European ancestry cases, at least 130,691 European ancestry controls	634,037 European ancestry cases, 1,308,690 European ancestry controls	6p22.1	GABBR1	rs28986306-C	0.0507	2E-9		0.02608803	[0.016-0.036] unit decrease	NR [9417325] (imputed)	N
591	chr6_dbb_hap3	872401	872402	rs362517	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	GABBR1	rs362517-A	NR	1E-10		0.0398451	[0.028-0.052] unit decrease	Affymetrix [321016] (imputed)	N
591	chr6_dbb_hap3	873672	873673	rs3025642	30172743	Liang X	2018-08-30	Bone	Assessing the genetic correlations between early growth parameters and bone mineral density: A polygenic risk score analysis.	Ulna and radius bone mineral density	2,286 European ancestry individuals	NA	6p22.1	GABBR1	rs3025642-?	NR	8E-7				Affymetrix [753382]	N
591	chr6_dbb_hap3	874197	874198	rs2267633	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	6p22.1	intergenic	rs2267633-A	0.87355	1E-9		6.079	z score decrease	Illumina [18485882] (imputed)	N
591	chr6_dbb_hap3	878761	878762	rs740883	30804558	Grove J	2019-02-25	Nat Genet	Identification of common genetic risk variants for autism spectrum disorder.	Autism spectrum disorder	18,381 European ancestry cases, 27,969 European ancestry controls	2,119 European ancestry cases, 142,379 European ancestry controls	6p22.1	Intergenic	rs740883-T	0.088	1E-6		1.1160713	[NR]	Illumina [9112387] (imputed)	N
591	chr6_dbb_hap3	883347	883348	rs41286287	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	6p22.1	NR	rs41286287-A	NR	2E-8		5.59	z score increase	Affymetrix [10847151] (imputed)	N
591	chr6_dbb_hap3	883347	883348	rs41286287	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling miserable	376,097 European ancestry individuals	NA	6p22.1	TRIM27	rs41286287-A	0.0707157	1E-8		5.72	z score increase	NR [10847151] (imputed)	N
591	chr6_dbb_hap3	883792	883793	rs29253	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	GABBR1	rs29253-G	NR	3E-12		0.0329464	[0.024-0.042] unit decrease	Affymetrix [321016] (imputed)	N
591	chr6_dbb_hap3	897622	897623	rs41291770	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	145,648 East Asian ancestry individuals	NA	6p22.1	NR	rs41291770-T	0.792877	4E-11		0.030339	[0.021-0.039] SD units decrease	Affymetrix, Illumina [16710488] (imputed)	N
591	chr6_dbb_hap3	899599	899600	rs143229677	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	6p22.1	GABBR1	rs143229677-A	0.0035	3E-13		0.2309051	[0.17-0.29] unit increase	Affymetrix [~ 2500000] (imputed)	N
591	chr6_dbb_hap3	905293	905294	rs62392942	28440896	Yin X	2017-04-25	Am J Med Genet B Neuropsychiatr Genet	Genome-wide meta-analysis identifies a novel susceptibility signal at CACNA2D3 for nicotine dependence.	Nicotine dependence	7,297 European ancestry cases, 5,577 European ancestry controls, 918 European ancestry whole genome sequenced cases, 921 European ancestry whole genome sequenced controls, African American cases, 1,500 African American controls	NA	6p22.1	GABBR1	rs62392942-T		1E-6		0.06	[0.04-0.08] unit decrease	Illumina [at least 3251541] (imputed)	N
591	chr6_dbb_hap3	906867	906868	rs111508444	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p22.1	NR	rs111508444-A	0.945	2E-19		1.522	[1.43-1.61]	Illumina [11270530] (imputed)	N
591	chr6_dbb_hap3	910400	910401	rs3095267	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine without aura	7,107 European ancestry cases, 69,427 European ancestry controls	NA	6p22.1	intergenic	rs3095267-?	0.81	9E-6		1.12	[1.06-1.18]	Affymetrix, Illumina [~ 2300000] (imputed)	N
591	chr6_dbb_hap3	910455	910456	rs3131856	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical thickness (MOSTest)	26,502 European ancestry individuals	NA	6p22.1	RALGPS2, ANGPTL1	rs3131856-?		2E-10				NR [7428630] (imputed)	N
591	chr6_dbb_hap3	910455	910456	rs3131856	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	6p22.1	LRRC16A, SCGN, SLC17A4, SLC17A1, SLC17A3, SLC17A2, TRIM38, HIST1H1A, HIST1H3A, HIST1H4A, HIST1H4B, HIST1H3B, HIST1H2AB, HIST1H2BB, HIST1H3C, HIST1H1C, HFE, HIST1H2BC, HIST1H2AC, HIST1H2BD, HIST1H2BE, HIST1H4D, HIST1H3D, HIST1H2AD, HIST1H2BF, HIST1H4E, HIST1H3G, HIST1H2BI, BTN3A2, BTN2A2, BTN3A1, BTN3A3, BTN2A1, BTN1A1, HMGN4, ABT1, ZNF322, HIST1H2BJ, HIST1H2AG, HIST1H2BK, HIST1H4I, HIST1H2AH, POM121L2, ZNF391, ZNF184, HIST1H2BL, HIST1H2AI, HIST1H3H, HIST1H2AJ, HIST1H2BM, HIST1H4J, HIST1H4K, HIST1H2AK, HIST1H2BN, HIST1H2AL, HIST1H1B, HIST1H3I, HIST1H4L, HIST1H3J, HIST1H2AM, HIST1H2BO, OR2B2, OR2B6, ZNF165, ZSCAN16, ZKSCAN8, ZSCAN9, ZKSCAN4, NKAPL, PGBD1, ZSCAN31, ZKSCAN3, ZSCAN12, ZSCAN23, GPX6, SCAND3, TRIM27, C6orf100, ZNF311, OR2W1, OR2B3, OR2J1, OR2J3, OR2J2, OR14J1, OR5V1, OR12D3, OR12D2, OR11A1, OR10C1, OR2H1, MAS1L, UBD, GABBR1, OR2H2	rs3131856-?		7E-16				NR [7428630] (imputed)	N
591	chr6_dbb_hap3	910455	910456	rs3131856	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p22.1	NR	rs3131856-?	NR	1E-7		0.1953	[0.12-0.27] unit decrease	Illumina [at least 560000] (imputed)	N
591	chr6_dbb_hap3	911539	911539	rs75140056	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Platelet count	8,850 African American individuals, 18,949 Hispanic/Latino individuals, 541 Asian ancestry individuals, 603 Native American ancestry individuals, 385 individuals	NA	6p22.1	NR	rs75140056-?	NR	6E-6		2.374875	[1.35-3.4] unit increase	Illumina [30743395] (imputed)	N
591	chr6_dbb_hap3	911539	911539	rs75140056	26805783	Schick UM	2016-01-21	Am J Hum Genet	Genome-wide Association Study of Platelet Count Identifies Ancestry-Specific Loci in Hispanic/Latino Americans.	Platelet count	12,491 Hispanic/Latin American individuals	7,170 Hispanic/Latin American individuals	6p22.1	MOG, GABBR1	rs75140056-C	0.39	1E-9		0.151	[0.10-0.20] unit decrease	Illumina [2232944] (imputed)	N
591	chr6_dbb_hap3	913040	913041	rs9257927	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs9257927-?		1E-8		1.66	[1.39-1.97]	Illumina [7645193] (imputed)	N
591	chr6_dbb_hap3	914776	914777	rs29232	19664746	Tse KP	2009-08-05	Am J Hum Genet	Genome-wide association study reveals multiple nasopharyngeal carcinoma-associated loci within the HLA region at chromosome 6p21.3.	Nasopharyngeal carcinoma	277 Han Chinese ancestry cases, 285 Han Chinese ancestry controls	635 Han Chinese ancestry cases, 1,640 Han Chinese ancestry controls	6p22.1	GABBR1	rs29232-A	0.46	9E-17		1.67	[1.48-1.88]	Illumina [480365]	N
591	chr6_dbb_hap3	915122	915123	rs3117318	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fish- and plant-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	6p22.1	LRRC16A, SCGN, SLC17A4, SLC17A1, SLC17A3, SLC17A2, TRIM38, HIST1H1A, HIST1H3A, HIST1H4A, HIST1H4B, HIST1H3B, HIST1H2AB, HIST1H2BB, HIST1H3C, HIST1H1C, HFE, HIST1H4C, HIST1H1T, HIST1H2BC, HIST1H2AC, HIST1H2BD, HIST1H2BE, HIST1H4D, HIST1H3D, HIST1H2AD, HIST1H2BF, HIST1H4E, HIST1H3G, HIST1H2BI, BTN3A2, BTN2A2, BTN3A1, BTN3A3, BTN2A1, BTN1A1, HMGN4, ABT1, ZNF322, HIST1H2BJ, HIST1H2AG, HIST1H2BK, HIST1H4I, HIST1H2AH, PRSS16, POM121L2, ZNF391, ZNF184, HIST1H2BL, HIST1H2AI, HIST1H3H, HIST1H2AJ, HIST1H2BM, HIST1H4J, HIST1H4K, HIST1H2AK, HIST1H2BN, HIST1H2AL, HIST1H1B, HIST1H3I, HIST1H4L, HIST1H3J, HIST1H2AM, HIST1H2BO, OR2B2, OR2B6, ZNF165, ZSCAN16, ZKSCAN8, ZSCAN9, ZKSCAN4, NKAPL, PGBD1, ZSCAN31, ZKSCAN3, ZSCAN12, ZSCAN23, GPX6, SCAND3, TRIM27, C6orf100, ZNF311, OR2W1, OR2B3, OR2J1, OR2J3, OR2J2, OR14J1, OR5V1, OR12D3, OR12D2, OR11A1, OR10C1, OR2H1, MAS1L, UBD, GABBR1, OR2H2	rs3117318-?	NR	7E-9		0.0168393	[0.011-0.023] unit increase	Affymetrix [25921788] (imputed)	N
591	chr6_dbb_hap3	915226	915227	rs3131854	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p22.1		rs3131854-T	0.213	6E-18				Affymetrix [10369434] (imputed)	N
592	chr6_dbb_hap3	922307	922308	rs188289856	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p22.1	NR	rs188289856-?	NR	6E-8		0.2325	[0.15-0.32] unit increase	Illumina [at least 560000] (imputed)	N
592	chr6_dbb_hap3	925572	925573	rs1233367	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6p22.1	MOG	rs1233367-G	NR	3E-8		0.0181448	[0.012-0.025] unit decrease	Affymetrix [321114] (imputed)	N
592	chr6_dbb_hap3	926667	926668	rs9468569	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p22.1	MOG, ZFP57, ZDHHC20P1	rs9468569-A	0.01203611	1E-16	(EA, Alpha-2-macroglobulin receptor-associated protein)	1.631	[1.25-2.01] unit increase	Affymetrix [509946]	N
592	chr6_dbb_hap3	927464	927465	rs29234	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	6p22.1	Intergenic	rs29234-?	NR	2E-8		2.219	[NR]	Affymetrix [492217] (imputed)	N
592	chr6_dbb_hap3	929672	929673	rs2252711	23284291	Hancock DB	2012-12-20	PLoS Genet	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (smoking interaction)	50,047 European ancestry individuals	NA	6p22.1	MOG	rs2252711-T	NR	4E-7	(FEV1/FVC, Ever-smoking)			NR [~ 2500000] (imputed)	N
592	chr6_dbb_hap3	930300	930301	rs16895223	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	MOG	rs16895223-G	NR	4E-10		0.0263599	[0.018-0.035] unit decrease	Affymetrix [321016] (imputed)	N
592	chr6_dbb_hap3	931510	931511	rs182971160	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p22.1	NR	rs182971160-?	NR	2E-7		0.3024	[0.19-0.42] unit increase	Illumina [at least 560000] (imputed)	N
592	chr6_dbb_hap3	937360	937361	rs3130253	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p22.1	MOG	rs3130253-A		1E-44		0.053	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
592	chr6_dbb_hap3	947692	947693	rs28367493	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p22.1		rs28367493-?	NR	2E-11		0.0217788	[0.016-0.028] unit decrease	Affymetrix [20259828] (imputed)	N
592	chr6_dbb_hap3	949512	949513	rs396660	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	6p22.1	NR	rs396660-?	NR	3E-10	(MIC-A)	0.504823	[0.35-0.66] unit increase	Illumina [11901634] (imputed)	N
592	chr6_dbb_hap3	950212	950213	rs9257953	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	91,908 East Asian ancestry individuals	NA	6p22.1		rs9257953-A	0.223075	3E-9		0.0321111	[0.022-0.043] unit increase	Illumina [13469940] (imputed)	N
592	chr6_dbb_hap3	951061	951062	rs17369215	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	6p22.1	Intergenic	rs17369215-T	0.2278	2E-11	(MTAG)	0.0183	[0.013-0.024] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
592	chr6_dbb_hap3	951466	951467	rs17184549	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	6p22.1	Intergenic	rs17184549-A	0.2165	1E-8	(MTAG)	0.0124	[0.0081-0.0167] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
592	chr6_dbb_hap3	951466	951467	rs17184549	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	6p22.1	Intergenic	rs17184549-A	0.2168	4E-11	(MTAG)	0.0133	[0.0094-0.0172] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
592	chr6_dbb_hap3	952894	952895	rs385492	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Uterine fibroids (MTAG)	5,236 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs385492-?		5E-6		1.0309278	[1.02-1.04]	Illumina [7645193] (imputed)	N
592	chr6_dbb_hap3	952894	952895	rs385492	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p22.1	HCG4, HCG4B, HCG8, HCG9, HLA-A, HLA-F, HLA-F-AS1, HLA-G, HLA-H, HLA-J, IFITM4P, LOC554223, MOG, PPP1R11, RNF39, ZFP57, ZNRD1, ZNRD1-AS1	rs385492-T		4E-9		1.06	[1.04-1.08]	Affymetrix, Illumina [NR]	N
592	chr6_dbb_hap3	952894	952895	rs385492	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	6p22.1	NR	rs385492-T	NR	1E-8		1.06	[NR]	Illumina [7158791] (imputed)	N
592	chr6_dbb_hap3	955548	955549	rs3117292	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	ZFP57	rs3117292-G	NR	4E-12		0.0204333	[0.015-0.026] unit decrease	Affymetrix [321016] (imputed)	N
592	chr6_dbb_hap3	955602	955603	rs9257985	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Gynecologic disease (multivariate analysis)	up to 7,975 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs9257985-?		2E-8	(uterine fibroid, uterine cervical cancer)			Illumina [7645193] (imputed)	N
592	chr6_dbb_hap3	964137	964138	rs3116813	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p22.1	NR	rs3116813-A	0.1026	6E-7	(EA)	0.0553	[0.034-0.077] unit decrease	Illumina [~ 11800000] (imputed)	N
592	chr6_dbb_hap3	964266	964267	rs3116812	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8 on Central Memory CD8+ T cell	2,910 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p22.1		rs3116812-G	0.2977	1E-8		0.1871	[0.12-0.25] unit decrease	Illumina [17945467] (imputed)	N
592	chr6_dbb_hap3	967218	967219	rs3131888	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	1,505 Ashkenazi Jewish founder cases, 2,553 Ashkenazi Jewish founder controls	NA	6p22.1	NR	rs3131888-C	NR	7E-6		1.2820514	[NR]	Illumina [up to 9792010] (imputed)	N
592	chr6_dbb_hap3	968690	968691	rs7764829	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p22.1		rs7764829-A	0.612	4E-25				Affymetrix [10369434] (imputed)	N
592	chr6_dbb_hap3	972286	972286	rs143539749	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	ZDHHC20P1	rs143539749-ATATATATTC	NR	3E-9		0.0217332	[0.015-0.029] unit decrease	Affymetrix [323858] (imputed)	N
592	chr6_dbb_hap3	972286	972286	rs143539749	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	ZDHHC20P1	rs143539749-ATATATATTC	NR	6E-9		0.0213619	[0.014-0.029] unit decrease	Affymetrix [127266] (imputed)	N
592	chr6_dbb_hap3	972336	972337	rs3116800	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	ZDHHC20P1	rs3116800-T	NR	2E-8		0.01833	[0.012-0.025] unit increase	Affymetrix [321016] (imputed)	N
592	chr6_dbb_hap3	973605	973606	rs3129055	19664746	Tse KP	2009-08-05	Am J Hum Genet	Genome-wide association study reveals multiple nasopharyngeal carcinoma-associated loci within the HLA region at chromosome 6p21.3.	Nasopharyngeal carcinoma	277 Han Chinese ancestry cases, 285 Han Chinese ancestry controls	635 Han Chinese ancestry cases, 1,640 Han Chinese ancestry controls	6p22.1	HLA-F	rs3129055-G	0.31	7E-11		1.51	[1.34-1.71]	Illumina [480365]	N
592	chr6_dbb_hap3	974374	974375	rs9258116	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p22.1		rs9258116-T	0.714	3E-9				Affymetrix [10369434] (imputed)	N
592	chr6_dbb_hap3	974411	974412	rs113510833	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	6p22.1	HLA-F, ZFP57	rs113510833-T	0.10919500000000004	3E-8		0.028025	[0.018-0.038] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
592	chr6_dbb_hap3	983358	983359	rs1611371	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p22.1		rs1611371-C	0.228	2E-20				Affymetrix [10369434] (imputed)	N
592	chr6_dbb_hap3	989373	989374	rs2517910	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	HLA-F	rs2517910-A	NR	3E-14		0.0214991	[0.016-0.027] unit increase	Affymetrix [321016] (imputed)	N
592	chr6_dbb_hap3	991399	991400	rs9258177	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	HLA-F	rs9258177-A	NR	3E-10		0.0194677	[0.013-0.026] unit decrease	Affymetrix [321016] (imputed)	N
592	chr6_dbb_hap3	991550	991551	rs9258183	33002439	Jin G	2020-10-01	Lancet Oncol	Genetic risk, incident gastric cancer, and healthy lifestyle: a meta-analysis of genome-wide association studies and prospective cohort study.	Gastric cancer	10,254 Han Chinese ancestry cases, 10,914 Han Chinese ancestry controls	NA	6p22.1	NR	rs9258183-A	0.47	1E-5		1.1	NR	Affymetrix, Illumina [6957974] (imputed)	N
592	chr6_dbb_hap3	991900	991901	rs1362126	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal cancer	978 Austrian ancestry colorectal cancer cases, 636 Austrian ancestry advanced colorectal adenoma cases, 4,294 European ancestry controls	NA	6p22.1	Intergenic	rs1362126-?		1E-7		1.3338668	[NR]	Affymetrix [492217] (imputed)	N
592	chr6_dbb_hap3	991900	991901	rs1362126	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal cancer	978 Austrian ancestry cases, 4,294 European ancestry controls	NA	6p22.1	Intergenic	rs1362126-?		3E-7		1.3908206	[NR]	Affymetrix [492217] (imputed)	N
592	chr6_dbb_hap3	993503	993504	rs2072899	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p22.1	NR	rs2072899-?	NR	7E-18		0.1076	[0.083-0.132] unit increase	Illumina [at least 560000] (imputed)	N
592	chr6_dbb_hap3	996385	996386	rs1628578	34050765	Zhang L	2021-05-29	J Clin Endocrinol Metab	Joint genome-wide association analyses identified 49 novel loci for age at natural menopause.	Age at menopause	181,219 European ancestry individuals, 43,861 East Asian ancestry individuals	NA	6p22.1		rs1628578-A	0.71	3E-13		0.1	unit increase	Illumina [2093892] (imputed)	N
592	chr6_dbb_hap3	996385	996386	rs1628578	34050765	Zhang L	2021-05-29	J Clin Endocrinol Metab	Joint genome-wide association analyses identified 49 novel loci for age at natural menopause.	Age at menopause	181,219 European ancestry individuals	NA	6p22.1		rs1628578-A	0.71	2E-11		0.1	unit increase	Illumina [2398641] (imputed)	N
592	chr6_dbb_hap3	996737	996738	rs2735059	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	6p22.1	NR	rs2735059-A	0.43	3E-13		0.0136	[0.0099-0.0173] unit decrease	NR [NR]	N
592	chr6_dbb_hap3	997540	997541	rs885946	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	6p22.1	NR	rs885946-T	0.186879	3E-10		0.05062379	[0.035-0.066] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
592	chr6_dbb_hap3	998197	998198	rs60581484	33574277	Kawai Y	2021-02-11	NPJ Genom Med	Mapping of susceptible variants for cold medicine-related Stevens-Johnson syndrome by whole-genome resequencing.	Cold medicine-related Stevens-Johnson syndrome/toxic epidermal necrolysis (SJS/TEN) with severe ocular complications	133 Japanese ancestry cases, 418 Japanese ancestry controls	NA	6p22.1		rs60581484-A	0.218	2E-13		4.204		Illumina [7608150]	N
592	chr6_dbb_hap3	1001493	1001494	rs2735054	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p22.1	NR	rs2735054-G	0.413	3E-11	(IFNAR2_of_CD20p)			Illumina [5084123] (imputed)	N
592	chr6_dbb_hap3	1006539	1006540	rs2523393	19525953	De Jager PL	2009-06-14	Nat Genet	Meta-analysis of genome scans and replication identify CD6, IRF8 and TNFRSF1A as new multiple sclerosis susceptibility loci.	Multiple sclerosis	2,624 European ancestry cases, 7,220 European ancestry controls	2,215 European ancestry cases, 2,116 European ancestry controls	6p22.1	HLA-B	rs2523393-A	0.59	1E-17		1.28	[1.18-1.39]	Affymetrix, Illumina [~ 2560000] (imputed)	N
592	chr6_dbb_hap3	1008147	1008148	rs1633096	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	HLA-F-AS1	rs1633096-T	NR	2E-10		0.0225267	[0.016-0.029] unit decrease	Affymetrix [323858] (imputed)	N
592	chr6_dbb_hap3	1008147	1008148	rs1633096	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	HLA-F-AS1	rs1633096-T	NR	3E-10		0.0224137	[0.015-0.029] unit decrease	Affymetrix [127266] (imputed)	N
592	chr6_dbb_hap3	1008147	1008148	rs1633096	29196614	Sud A	2017-12-01	Nat Commun	Genome-wide association study of classical Hodgkin lymphoma identifies key regulators of disease susceptibility.	Mixed cellularity Hodgkin lymphoma	828 European ancestry cases, 14,315 European ancestry controls	135 cases, 3,069 controls	6p22.1	HLA-F	rs1633096-?	NR	3E-23		1.79	[1.59-2.00]	Illumina [> 10000000] (imputed)	N
592	chr6_dbb_hap3	1009789	1009790	rs374787445	31577861	Dai J	2019-10-31	Int J Cancer	Genome-wide association study of INDELs identified four novel susceptibility loci associated with lung cancer risk.	Lung cancer	20,871 European ancestry cases, 15,971 European ancestry controls, 2,331 Chinese ancestry cases, 3,077 Chinese ancestry controls	NA	6p22.1	HLA-F, AS1	rs374787445-D	0.18	7E-9		1.11	[1.07-1.15]	Illumina [484196]	N
592	chr6_dbb_hap3	1013135	1013136	rs9258224	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	HLA-F-AS1, MICE	rs9258224-A	NR	2E-8		0.0282221	[0.018-0.038] unit decrease	Affymetrix [321016] (imputed)	N
592	chr6_dbb_hap3	1024026	1024027	rs9258260	22412388	Kenny EE	2012-03-08	PLoS Genet	A genome-wide scan of Ashkenazi Jewish Crohn's disease suggests novel susceptibility loci.	Crohn's disease	737 Ashkenazi Jewish cases, 2,257  Ashkenazi Jewish controls	971 Ashkenazi Jewish cases, 2,124 Ashkenazi Jewish controls	6p22.1	UBD, HLA-A, HLA-G, HLA-F, MOG, GABBR1, HLA-H	rs9258260-T	0.104	2E-10		1.45	[1.21-1.68]	Affymetrix, Illumina [1060934] (imputed)	N
592	chr6_dbb_hap3	1026861	1026862	rs1633063	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Sleep duration	384,317 European ancestry individuals	NA	6p22.1		rs1633063-T	0.246	3E-9		0.01681	[0.011-0.022] unit decrease	Affymetrix, Illumina [10862567] (imputed)	N
592	chr6_dbb_hap3	1030997	1030998	rs1610633	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p22.1		rs1610633-G	0.752	5E-94				Affymetrix [10369434] (imputed)	N
592	chr6_dbb_hap3	1031660	1031661	rs1611284	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p22.1	XXbac-BPG170G13.31	rs1611284-G	NR	2E-9		0.0170381	[0.011-0.023] unit decrease	Affymetrix [319769] (imputed)	N
592	chr6_dbb_hap3	1031660	1031661	rs1611284	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p22.1	XXbac-BPG170G13.31	rs1611284-G	NR	2E-8		0.015981	[0.01-0.022] unit decrease	Affymetrix [319769] (imputed)	N
592	chr6_dbb_hap3	1033407	1033408	rs1737062	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p22.1		rs1737062-C	0.472	8E-23				Affymetrix [10369434] (imputed)	N
592	chr6_dbb_hap3	1035735	1035736	rs35794939	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antithrombotic agents)	67,653 European ancestry cases, 85,986 European ancestry controls, 54,220 East Asian ancestry cases, 124,506 East Asian ancestry controls	NA	6p22.1		rs35794939-G	NR	2E-11		0.086	[0.061-0.111] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
592	chr6_dbb_hap3	1036355	1036356	rs115635848	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	XXbac-BPG170G13.31	rs115635848-A	NR	9E-11		0.0221196	[0.015-0.029] unit decrease	Affymetrix [323858] (imputed)	N
592	chr6_dbb_hap3	1036355	1036356	rs115635848	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	XXbac-BPG170G13.31	rs115635848-A	NR	8E-11		0.0222067	[0.016-0.029] unit decrease	Affymetrix [127266] (imputed)	N
592	chr6_dbb_hap3	1036602	1036603	rs28986310	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	6p22.1	NR	rs28986310-T	0.0618266	2E-8		5.66	z score increase	NR [10847151] (imputed)	N
592	chr6_dbb_hap3	1036602	1036603	rs28986310	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	6p22.1	intergenic	rs28986310-T	0.061827	1E-7		5.292	z score increase	Illumina [18485882] (imputed)	N
592	chr6_dbb_hap3	1038367	1038368	rs1737030	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mononucleosis	17,457 European ancestry cases, 68,446 European ancestry controls	NA	6p22.1	NR	rs1737030-?	NR	8E-7		0.0636	[0.038-0.089] unit decrease	Illumina [at least 560000] (imputed)	N
592	chr6_dbb_hap3	1039485	1039486	rs1815741	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Non-small cell lung cancer	27,120 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	6p22.1	NR	rs1815741-C	0.92	3E-7		0.86	[0.81-0.91]	NR [NR] (imputed)	N
592	chr6_dbb_hap3	1039485	1039486	rs1815741	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Lung adenocarcinoma	15,581 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	6p22.1	NR	rs1815741-C	0.92	2E-7		0.84	[0.78-0.89]	NR [NR] (imputed)	N
592	chr6_dbb_hap3	1039789	1039790	rs3888722	30169916	Sun Y	2018-08-31	J Eur Acad Dermatol Venereol	Investigation of the Predisposing Factor of Pemphigus and its clinical subtype through a Genome-wide association and next generation sequence analysis.	Pemphigus foliaceus	65 Chinese ancestry cases, 844 Chinese ancestry controls	at least 49 Chinese ancestry cases, up to 996 Chinese ancestry controls	6p22.1	NR	rs3888722-?	NR	7E-9		2.74		Illumina [5546030] (imputed)	N
592	chr6_dbb_hap3	1048527	1048528	rs116603789	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p22.1	NR	rs116603789-?	NR	1E-6		0.2936	[0.17-0.41] unit increase	Illumina [at least 560000] (imputed)	N
593	chr6_dbb_hap3	1049483	1049484	rs1611236	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p22.1		rs1611236-A	0.678	4E-29				Affymetrix [10369434] (imputed)	N
593	chr6_dbb_hap3	1049483	1049484	rs1611236	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p22.1		rs1611236-A	0.678	6E-22				Affymetrix [10369434] (imputed)	N
593	chr6_dbb_hap3	1049483	1049484	rs1611236	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p22.1		rs1611236-A	0.678	7E-31				Affymetrix [10369434] (imputed)	N
593	chr6_dbb_hap3	1049483	1049484	rs1611236	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p22.1		rs1611236-A	0.678	4E-48				Affymetrix [10369434] (imputed)	N
593	chr6_dbb_hap3	1049483	1049484	rs1611236	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p22.1		rs1611236-A	0.678	8E-38				Affymetrix [10369434] (imputed)	N
593	chr6_dbb_hap3	1049483	1049484	rs1611236	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p22.1		rs1611236-A	0.678	1E-16				Affymetrix [10369434] (imputed)	N
593	chr6_dbb_hap3	1051921	1051922	rs9258357	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p22.1		rs9258357-T	0.163	4E-16				Affymetrix [10369434] (imputed)	N
593	chr6_dbb_hap3	1051921	1051922	rs9258357	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	6p22.1		rs9258357-T	0.163	3E-15				Affymetrix [10369434] (imputed)	N
593	chr6_dbb_hap3	1051921	1051922	rs9258357	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p22.1		rs9258357-T	0.163	3E-10				Affymetrix [10369434] (imputed)	N
593	chr6_dbb_hap3	1053600	1053601	rs9258375	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p22.1	NR	rs9258375-G	0.122	1E-12		0.0131	[0.0094-0.0168] unit decrease	NR [7666894] (imputed)	N
593	chr6_dbb_hap3	1053600	1053601	rs9258375	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA	6p22.1	NR	rs9258375-?	NR	8E-6		0.0571	[0.032-0.082] unit decrease	Illumina [at least 560000] (imputed)	N
593	chr6_dbb_hap3	1055185	1055186	rs114802991	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	6p22.1	HLA-G	rs114802991-G	0.993211	8E-9		0.072933	[0.048-0.098] unit decrease	Affymetrix [NR] (imputed)	N
593	chr6_dbb_hap3	1060668	1060669	rs1611207	32752121	Nedoszytko B	2020-07-31	Int J Mol Sci	Results from a Genome-Wide Association Study (GWAS) in Mastocytosis Reveal New Gene Polymorphisms Associated with WHO Subgroups.	Mastocytosis	234 European ancestry cases, 5,606 European ancestry controls	NA	6p22.1	HLA-V	rs1611207-A	0.3807	3E-13		2.105	[1.9-2.31]	Illumina [281811]	N
593	chr6_dbb_hap3	1060668	1060669	rs1611207	32752121	Nedoszytko B	2020-07-31	Int J Mol Sci	Results from a Genome-Wide Association Study (GWAS) in Mastocytosis Reveal New Gene Polymorphisms Associated with WHO Subgroups.	Cutaneous mastocytosis	141 European ancestry cases, 5,606 European ancestry controls	NA	6p22.1	HLA-V	rs1611207-A	0.3807	1E-8		2.01	[-18.0604-22.0804]	Illumina [281811]	N
593	chr6_dbb_hap3	1060821	1060822	rs45479291	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	229 European ancestry cases, 1,088 European ancestry controls	NA	6p22.1	HLA-V	rs45479291-?	NR	2E-16	(conditional on rs12524487and rs62392216)			Illumina [4388215] (imputed)	N
593	chr6_dbb_hap3	1063694	1063695	rs1737002	32771030	Tangtanatakul P	2020-08-08	Arthritis Res Ther	Meta-analysis of genome-wide association study identifies FBN2 as a novel locus associated with systemic lupus erythematosus in Thai population.	Systemic lupus erythematosus	487 Thai cases, 1,606 Thai controls	405 Thai cases, 1,590 Thai controls	6p22.1	HLA-V	rs1737002-A	0.08	2E-6		1.6334	[NR]	Illumina [421909] (imputed)	N
593	chr6_dbb_hap3	1065094	1065095	rs1633005	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p22.1	HCG4, HLA-G	rs1633005-A	0.282	7E-16				Illumina [118177]	N
593	chr6_dbb_hap3	1065709	1065710	rs2523414	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	6p22.1	NR	rs2523414-?	NR	6E-14		7.508	NR z score increase	Illumina [at least 830937] (imputed)	N
593	chr6_dbb_hap3	1068966	1068967	rs1611185	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	HLA-P	rs1611185-C	NR	2E-9		0.0171984	[0.012-0.023] unit decrease	Affymetrix [321016] (imputed)	N
593	chr6_dbb_hap3	1072243	1072244	rs1610660	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	6p22.1	RPL7AP7	rs1610660-G	0.19782	5E-16		0.036476128	[0.028-0.045] unit decrease	Affymetrix [93095623] (imputed)	N
593	chr6_dbb_hap3	1078298	1078299	rs9380141	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p22.1	HCG4, HLA-G	rs9380141-C	0.29	1E-6	(EA)	1.94	[1.48-2.55]	Illumina [up to 547389]	N
593	chr6_dbb_hap3	1081673	1081674	rs1611182	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	6p22.1	MICG	rs1611182-T	NR	4E-9		0.017276	[0.012-0.023] unit increase	Affymetrix [321788] (imputed)	N
593	chr6_dbb_hap3	1082672	1082673	rs1610707	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	6p22.1	MICG	rs1610707-A	0.359635	1E-13		0.02435493	[0.018-0.031] unit increase	Affymetrix [93095623] (imputed)	N
593	chr6_dbb_hap3	1087392	1087393	rs56221809	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	6p22.1		rs56221809-G	0.863227	8E-9		0.033593	[0.022-0.045] unit decrease	NR [11722792] (imputed)	N
593	chr6_dbb_hap3	1089577	1089578	rs201604542	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p22.1		rs201604542-?	NR	6E-13		0.105892	[0.076-0.135] unit increase	Affymetrix [20259828] (imputed)	N
593	chr6_dbb_hap3	1097305	1097306	rs1632941	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	6p22.1	NR	rs1632941-C	0.46	7E-10	(Conditioned on chr6:28129789)	0.015807396	[0.011-0.021] unit decrease	NR [~ 10000000] (imputed)	N
593	chr6_dbb_hap3	1097663	1097664	rs145023077	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs145023077-?		7E-8		1.06	[1.04-1.09]	Illumina [7645193] (imputed)	N
593	chr6_dbb_hap3	1097663	1097664	rs145023077	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs145023077-?		8E-9		1.83	[1.49-2.25]	Illumina [7645193] (imputed)	N
593	chr6_dbb_hap3	1098040	1098041	rs12722482	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p22.1	NR	rs12722482-?	NR	5E-7		0.0966	[0.059-0.134] unit increase	Illumina [at least 560000] (imputed)	N
593	chr6_dbb_hap3	1099414	1099415	rs9380142	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	6p22.1	HLA-G	rs9380142-G	0.310253	5E-11		0.0409033	[0.029-0.053] unit decrease	Affymetrix [93095623] (imputed)	N
593	chr6_dbb_hap3	1099915	1099916	rs1611141	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	6p22.1	HCG4P8	rs1611141-G	0.499184	2E-24		0.031040031	[0.025-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
593	chr6_dbb_hap3	1100860	1100861	rs12662618	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	6p22.1	HCG4P8	rs12662618-C	0.1014	5E-15		0.04632551	[0.035-0.058] unit increase	Affymetrix [~ 2500000] (imputed)	N
593	chr6_dbb_hap3	1100860	1100861	rs12662618	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	6p22.1	HCG4P8	rs12662618-C	0.1014	5E-16		0.04778197	[0.036-0.059] unit decrease	Affymetrix [~ 2500000] (imputed)	N
593	chr6_dbb_hap3	1100860	1100861	rs12662618	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	6p22.1	HCG4P8	rs12662618-C	0.1015	1E-17		0.05062162	[0.039-0.062] unit decrease	Affymetrix [~ 2500000] (imputed)	N
593	chr6_dbb_hap3	1103339	1103340	rs9380145	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p22.1	NR	rs9380145-C	0.361	2E-21	(IFNAR2_of_CD20p)			Illumina [5084123] (imputed)	N
593	chr6_dbb_hap3	1107554	1107555	rs407238	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p22.1	HLA-G	rs407238-C	NR	4E-9		0.0168935	[0.011-0.023] unit decrease	Affymetrix [319769] (imputed)	N
593	chr6_dbb_hap3	1107554	1107555	rs407238	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p22.1	HLA-G	rs407238-C	NR	2E-8		0.0162062	[0.011-0.022] unit decrease	Affymetrix [319769] (imputed)	N
593	chr6_dbb_hap3	1107554	1107555	rs407238	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	HLA-G	rs407238-C	NR	7E-12		0.0196596	[0.014-0.025] unit increase	Affymetrix [321016] (imputed)	N
593	chr6_dbb_hap3	1107554	1107555	rs407238	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	23,963 European ancestry cases, 306,942 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	43,254 European ancestry cases, 1,471,118 European ancestry controls	6p22.1	HLA-G	rs407238-C	NR	4E-6		0.0336	unit decrease	Illumina [15409056] (imputed)	N
593	chr6_dbb_hap3	1108046	1108047	rs2517887	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	6p22.1	HLA-G	rs2517887-G	0.793716	2E-9		0.0146864	[0.0099-0.0195] unit decrease	Affymetrix [NR] (imputed)	N
593	chr6_dbb_hap3	1110438	1110440	rs34590927	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	6p22.1	NR	rs34590927-?	NR	4E-7		0.062	[0.038-0.086] unit decrease	Illumina [at least 560000] (imputed)	N
593	chr6_dbb_hap3	1110438	1110440	rs34590927	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	6p22.1	HLA-G, HLA-H	rs34590927-?	NR	4E-7		1.0638298	[1.04-1.09]	Illumina [13754664] (imputed)	N
593	chr6_dbb_hap3	1110511	1110512	rs1476570	30529582	Lu Y	2018-12-06	Gastroenterology	Large-scale Genome-wide Association Study of East Asians Identifies Loci Associated With Risk for Colorectal Cancer.	Colorectal cancer	22,775 East Asian ancestry cases, 47,731 East Asian ancestry controls	NA	6p22.1	HLA-G	rs1476570-A	0.376	7E-9		1.12	[1.08-1.16]	Affymetrix, Illumina [up to 10700000] (imputed)	N
593	chr6_dbb_hap3	1113547	1113548	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small LDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	1E-8		0.0338512	[0.022-0.046] unit decrease	NR [11722792] (imputed)	N
593	chr6_dbb_hap3	1113547	1113548	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium LDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	4E-8		0.0327944	[0.021-0.044] unit decrease	NR [11722792] (imputed)	N
593	chr6_dbb_hap3	1113547	1113548	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large LDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	3E-10		0.0370981	[0.026-0.049] unit decrease	NR [11722792] (imputed)	N
593	chr6_dbb_hap3	1113547	1113548	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in LDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	1E-9		0.0361295	[0.024-0.048] unit decrease	NR [11722792] (imputed)	N
593	chr6_dbb_hap3	1113547	1113548	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in IDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	2E-9		0.0345436	[0.023-0.046] unit decrease	NR [11722792] (imputed)	N
593	chr6_dbb_hap3	1113547	1113548	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol minus HDL-C levels	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	5E-10		0.0368197	[0.025-0.048] unit decrease	NR [11722792] (imputed)	N
593	chr6_dbb_hap3	1113547	1113548	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Remnant cholesterol (non-HDL, non-LDL -cholesterol)	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	3E-9		0.0352589	[0.024-0.047] unit decrease	NR [11722792] (imputed)	N
593	chr6_dbb_hap3	1113547	1113548	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium LDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	1E-8		0.0342027	[0.023-0.046] unit decrease	NR [11722792] (imputed)	N
593	chr6_dbb_hap3	1113547	1113548	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large LDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	4E-10		0.0369858	[0.025-0.049] unit decrease	NR [11722792] (imputed)	N
593	chr6_dbb_hap3	1113547	1113548	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in LDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	9E-10		0.036396	[0.025-0.048] unit decrease	NR [11722792] (imputed)	N
593	chr6_dbb_hap3	1113547	1113548	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in IDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	3E-10		0.0361572	[0.025-0.047] unit decrease	NR [11722792] (imputed)	N
593	chr6_dbb_hap3	1113547	1113548	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	LDL cholesterol levels	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	4E-10		0.0370623	[0.025-0.049] unit decrease	NR [11722792] (imputed)	N
593	chr6_dbb_hap3	1113547	1113548	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	5E-9		0.0347629	[0.023-0.046] unit decrease	NR [11722792] (imputed)	N
593	chr6_dbb_hap3	1113547	1113548	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	1E-8		0.0339143	[0.022-0.046] unit decrease	NR [11722792] (imputed)	N
593	chr6_dbb_hap3	1113547	1113548	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	4E-10		0.0372639	[0.026-0.049] unit decrease	NR [11722792] (imputed)	N
593	chr6_dbb_hap3	1113547	1113548	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large LDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	1E-10		0.0378589	[0.026-0.049] unit decrease	NR [11722792] (imputed)	N
593	chr6_dbb_hap3	1113547	1113548	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in LDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	1E-10		0.0379624	[0.026-0.05] unit decrease	NR [11722792] (imputed)	N
593	chr6_dbb_hap3	1113547	1113548	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small LDL particles	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	3E-8		0.0330855	[0.021-0.045] unit decrease	NR [11722792] (imputed)	N
593	chr6_dbb_hap3	1113547	1113548	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large LDL particles	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	7E-11		0.038717	[0.027-0.05] unit decrease	NR [11722792] (imputed)	N
593	chr6_dbb_hap3	1113547	1113548	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of LDL particles	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	5E-10		0.0371209	[0.025-0.049] unit decrease	NR [11722792] (imputed)	N
593	chr6_dbb_hap3	1113547	1113548	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Clinical LDL cholesterol levels	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	2E-10		0.0378905	[0.026-0.05] unit decrease	NR [11722792] (imputed)	N
593	chr6_dbb_hap3	1113547	1113548	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small LDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	2E-8		0.033257	[0.022-0.045] unit decrease	NR [11722792] (imputed)	N
593	chr6_dbb_hap3	1113547	1113548	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium VLDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	1E-11		0.0401155	[0.029-0.052] unit decrease	NR [11722792] (imputed)	N
593	chr6_dbb_hap3	1113547	1113548	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large LDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	2E-10		0.0376083	[0.026-0.049] unit decrease	NR [11722792] (imputed)	N
593	chr6_dbb_hap3	1113547	1113548	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in VLDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	4E-8		0.0327951	[0.021-0.044] unit decrease	NR [11722792] (imputed)	N
593	chr6_dbb_hap3	1113547	1113548	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in LDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	1E-9		0.0361619	[0.025-0.048] unit decrease	NR [11722792] (imputed)	N
593	chr6_dbb_hap3	1113547	1113548	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in IDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	3E-9		0.0342481	[0.023-0.046] unit decrease	NR [11722792] (imputed)	N
593	chr6_dbb_hap3	1113547	1113548	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	1E-8		0.0330288	[0.022-0.044] unit decrease	NR [11722792] (imputed)	N
593	chr6_dbb_hap3	1113547	1113548	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small LDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	4E-9		0.0352069	[0.024-0.047] unit decrease	NR [11722792] (imputed)	N
593	chr6_dbb_hap3	1113547	1113548	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	8E-11		0.0386497	[0.027-0.05] unit decrease	NR [11722792] (imputed)	N
593	chr6_dbb_hap3	1113547	1113548	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	2E-8		0.0333427	[0.022-0.045] unit decrease	NR [11722792] (imputed)	N
593	chr6_dbb_hap3	1113547	1113548	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large LDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	1E-10		0.0379659	[0.026-0.05] unit decrease	NR [11722792] (imputed)	N
593	chr6_dbb_hap3	1113547	1113548	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in IDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	2E-9		0.0344785	[0.023-0.046] unit decrease	NR [11722792] (imputed)	N
593	chr6_dbb_hap3	1113547	1113548	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein B levels	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	9E-10		0.0364076	[0.025-0.048] unit decrease	NR [11722792] (imputed)	N
593	chr6_dbb_hap3	1116701	1116702	rs2394186	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	6p22.1	NR	rs2394186-G	0.2192	2E-8		0.0271	[0.018-0.037] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
593	chr6_dbb_hap3	1116822	1116823	rs28724990	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total free cholesterol levels	115,082 European ancestry individuals	NA	6p22.1		rs28724990-T	0.844316	4E-9		0.0325566	[0.022-0.043] unit decrease	NR [11722792] (imputed)	N
593	chr6_dbb_hap3	1116822	1116823	rs28724990	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total esterified cholesterol levels	115,082 European ancestry individuals	NA	6p22.1		rs28724990-T	0.844316	2E-8		0.0309173	[0.02-0.042] unit decrease	NR [11722792] (imputed)	N
593	chr6_dbb_hap3	1116822	1116823	rs28724990	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol levels	115,082 European ancestry individuals	NA	6p22.1		rs28724990-T	0.844316	1E-8		0.031549	[0.021-0.042] unit decrease	NR [11722792] (imputed)	N
593	chr6_dbb_hap3	1118115	1118115	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	2E-12		0.0298616	[0.022-0.038] unit increase	NR [11722792] (imputed)	N
593	chr6_dbb_hap3	1118115	1118115	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	2E-12		0.0298616	[0.022-0.038] unit increase	NR [11722792] (imputed)	N
593	chr6_dbb_hap3	1118115	1118115	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	1E-13		0.0318981	[0.023-0.04] unit increase	NR [11722792] (imputed)	N
593	chr6_dbb_hap3	1118115	1118115	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	1E-13		0.0318981	[0.023-0.04] unit increase	NR [11722792] (imputed)	N
593	chr6_dbb_hap3	1118115	1118115	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	2E-11		0.0287582	[0.02-0.037] unit increase	NR [11722792] (imputed)	N
593	chr6_dbb_hap3	1118115	1118115	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	2E-11		0.0287582	[0.02-0.037] unit increase	NR [11722792] (imputed)	N
593	chr6_dbb_hap3	1118115	1118115	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	6E-12		0.0290211	[0.021-0.037] unit increase	NR [11722792] (imputed)	N
593	chr6_dbb_hap3	1118115	1118115	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	6E-12		0.0290211	[0.021-0.037] unit increase	NR [11722792] (imputed)	N
593	chr6_dbb_hap3	1118115	1118115	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of apolipoprotein B to apolipoprotein A1 levels	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	9E-12		0.0295387	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
593	chr6_dbb_hap3	1118115	1118115	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of apolipoprotein B to apolipoprotein A1 levels	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	9E-12		0.0295387	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
593	chr6_dbb_hap3	1118115	1118115	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	2E-12		0.0296171	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
593	chr6_dbb_hap3	1118115	1118115	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	2E-12		0.0296171	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
593	chr6_dbb_hap3	1118115	1118115	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	9E-11		0.0275259	[0.019-0.036] unit increase	NR [11722792] (imputed)	N
593	chr6_dbb_hap3	1118115	1118115	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	9E-11		0.0275259	[0.019-0.036] unit increase	NR [11722792] (imputed)	N
593	chr6_dbb_hap3	1118115	1118115	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	2E-13		0.0307478	[0.023-0.039] unit decrease	NR [11722792] (imputed)	N
593	chr6_dbb_hap3	1118115	1118115	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	2E-13		0.0307478	[0.023-0.039] unit decrease	NR [11722792] (imputed)	N
593	chr6_dbb_hap3	1118115	1118115	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	2E-9		0.0253353	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
593	chr6_dbb_hap3	1118115	1118115	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	2E-9		0.0253353	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
593	chr6_dbb_hap3	1118115	1118115	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small LDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	5E-12		0.0303335	[0.022-0.039] unit decrease	NR [11722792] (imputed)	N
593	chr6_dbb_hap3	1118115	1118115	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small LDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	5E-12		0.0303335	[0.022-0.039] unit decrease	NR [11722792] (imputed)	N
593	chr6_dbb_hap3	1118115	1118115	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in IDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	2E-9		0.0257238	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
593	chr6_dbb_hap3	1118115	1118115	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in IDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	2E-9		0.0257238	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
593	chr6_dbb_hap3	1118115	1118115	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of IDL particles	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	7E-10		0.0268846	[0.018-0.035] unit decrease	NR [11722792] (imputed)	N
593	chr6_dbb_hap3	1118115	1118115	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of IDL particles	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	7E-10		0.0268846	[0.018-0.035] unit decrease	NR [11722792] (imputed)	N
593	chr6_dbb_hap3	1118115	1118115	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	4E-12		0.0285378	[0.02-0.037] unit decrease	NR [11722792] (imputed)	N
593	chr6_dbb_hap3	1118115	1118115	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	4E-12		0.0285378	[0.02-0.037] unit decrease	NR [11722792] (imputed)	N
593	chr6_dbb_hap3	1118115	1118115	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	4E-13		0.0301476	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
593	chr6_dbb_hap3	1118115	1118115	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	4E-13		0.0301476	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
593	chr6_dbb_hap3	1118445	1118446	rs28728979	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	MICF	rs28728979-A	NR	3E-8		0.0362437	[0.023-0.049] unit decrease	Affymetrix [321016] (imputed)	N
593	chr6_dbb_hap3	1119006	1119007	rs2523761	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	NR	rs2523761-?	NR	6E-8		5.432	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
593	chr6_dbb_hap3	1120202	1120203	rs9258593	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6p22.1		rs9258593-?	NR	9E-6		1.05543	[1.03-1.08]	NR [685523]	N
593	chr6_dbb_hap3	1121943	1121944	rs17179234	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MRPL55	5,367 Icelandic ancestry individuals	NA	6p22.1		rs17179234-A	0.1077	3E-55		0.466688	[0.41-0.53] unit increase	Illumina [7506463] (imputed)	N
593	chr6_dbb_hap3	1122209	1122210	rs17185657	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	6p22.1	MICF	rs17185657-T	0.076717	2E-15		0.032850858	[0.025-0.041] unit increase	Affymetrix [93095623] (imputed)	N
593	chr6_dbb_hap3	1122685	1122686	rs9258644	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p22.1		rs9258644-?	NR	3E-17		0.0268138	[0.021-0.033] unit decrease	Affymetrix [20259828] (imputed)	N
593	chr6_dbb_hap3	1123035	1123036	rs58005484	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	6p22.1	MICF	rs58005484-T	0.140864	8E-28		0.035311565	[0.029-0.042] unit increase	Affymetrix [93095623] (imputed)	N
593	chr6_dbb_hap3	1123035	1123036	rs58005484	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	6p22.1	MICF	rs58005484-T	0.140853	1E-24		0.033428524	[0.027-0.04] unit decrease	Affymetrix [93095623] (imputed)	N
593	chr6_dbb_hap3	1123035	1123036	rs58005484	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	6p22.1	MICF	rs58005484-T	0.1409	2E-20		0.04769708	[0.038-0.058] unit increase	Affymetrix [~ 2500000] (imputed)	N
593	chr6_dbb_hap3	1129258	1129259	rs2523822	21570397	Lucena MI	2011-04-12	Gastroenterology	Susceptibility to amoxicillin-clavulanate-induced liver injury is influenced by multiple HLA class I and II alleles.	Drug-induced liver injury (amoxicillin-clavulanate)	201 European ancestry cases, 532 European ancestry controls	NA	6p22.1	HLA-A	rs2523822-?	NR	2E-10		2.3	[1.80-2.90]	Illumina [822927]	N
593	chr6_dbb_hap3	1129570	1129571	rs9258750	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6p22.1		rs9258750-G	0.176259	2E-14		0.023563657	[0.018-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
593	chr6_dbb_hap3	1129849	1129850	rs1611713	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p22.1		rs1611713-A	0.712	2E-64				Affymetrix [10369434] (imputed)	N
593	chr6_dbb_hap3	1130234	1130235	rs1611719	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	6p22.1	HLA-G	rs1611719-G	0.79027	5E-13		0.0174799	[0.013-0.022] unit increase	Affymetrix [NR] (imputed)	N
593	chr6_dbb_hap3	1130234	1130235	rs1611719	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	6p22.1	HLA-G	rs1611719-G	0.790195	1E-14		0.019154	[0.014-0.024] unit increase	Affymetrix [NR] (imputed)	N
593	chr6_dbb_hap3	1132933	1132934	rs2524035	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	6p22.1	intergenic	rs2524035-G	0.8188	3E-23		0.04626543	[0.037-0.055] unit decrease	Affymetrix [~ 2500000] (imputed)	N
593	chr6_dbb_hap3	1133296	1133297	rs1611747	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small LDL	115,082 European ancestry individuals	NA	6p22.1		rs1611747-T	0.604397	4E-10		0.0262493	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
593	chr6_dbb_hap3	1133296	1133297	rs1611747	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p22.1		rs1611747-T	0.604	9E-22				Affymetrix [10369434] (imputed)	N
593	chr6_dbb_hap3	1133447	1133448	rs2517827	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	MICF	rs2517827-A	NR	2E-10		0.0215463	[0.015-0.028] unit decrease	Affymetrix [323858] (imputed)	N
593	chr6_dbb_hap3	1133447	1133448	rs2517827	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	MICF	rs2517827-A	NR	8E-11		0.0219247	[0.015-0.029] unit decrease	Affymetrix [127266] (imputed)	N
593	chr6_dbb_hap3	1133593	1133594	rs34832458	31577861	Dai J	2019-10-31	Int J Cancer	Genome-wide association study of INDELs identified four novel susceptibility loci associated with lung cancer risk.	Lung cancer	20,871 European ancestry cases, 15,971 European ancestry controls, 2,331 Chinese ancestry cases, 3,077 Chinese ancestry controls	NA	6p22.1	HLA-G	rs34832458-T	0.39	1E-9		0.92	[0.89-0.94]	Illumina [484196]	N
593	chr6_dbb_hap3	1133657	1133658	rs3128900	33269293	Kannambath S	2020-10-16	Open Forum Infect Dis	Genome-Wide Association Study Identifies Novel Colony Stimulating Factor 1 Locus Conferring Susceptibility to Cryptococcosis in Human Immunodeficiency Virus-Infected South Africans.	Cryptococcosis in HIV infection	319 South African ancestry cases, 399 South African ancestry controls	NA	6p22.1	HLA-H	rs3128900-?	NR	5E-6		0.9658	[NR]	Illumina [2686126] (imputed)	N
593	chr6_dbb_hap3	1133657	1133658	rs3128900	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6p22.1		rs3128900-T	0.845434	2E-21		0.032471824	[0.026-0.039] unit decrease	Affymetrix [93095623] (imputed)	N
593	chr6_dbb_hap3	1134072	1134073	rs7760545	33574277	Kawai Y	2021-02-11	NPJ Genom Med	Mapping of susceptible variants for cold medicine-related Stevens-Johnson syndrome by whole-genome resequencing.	Cold medicine-related Stevens-Johnson syndrome/toxic epidermal necrolysis (SJS/TEN) with severe ocular complications	133 Japanese ancestry cases, 418 Japanese ancestry controls	NA	6p22.1		rs7760545-A	0.2594	4E-16		4.373		Illumina [7608150]	N
593	chr6_dbb_hap3	1137337	1137338	rs1611637	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	IgM levels	14,442 Icelandic ancestry individuals	2,157 Swedish ancestry individuals	6p22.1	HLA-G	rs1611637-A	0.4554	1E-21		0.11	NR SD units increase	Illumina [21568490] (imputed)	N
593	chr6_dbb_hap3	1138103	1138104	rs885932	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p22.1	NR	rs885932-A	0.190644	2E-12		0.026577342	[0.019-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
593	chr6_dbb_hap3	1140838	1140839	rs2523815	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p22.1	HLA-A	rs2523815-A	0.64	2E-22		1.12	[1.11-1.14]	Illumina [at least 560000] (imputed)	N
593	chr6_dbb_hap3	1141333	1141334	rs3132713	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	6p22.1		rs3132713-A	0.181	2E-27				Affymetrix [10369434] (imputed)	N
593	chr6_dbb_hap3	1141810	1141811	rs56213322	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	6p22.1		rs56213322-A	0.819527	5E-23		0.029193865	[0.023-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
593	chr6_dbb_hap3	1143134	1143135	rs2734963	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Oral cavity and pharyngeal cancer	1,223 European ancestry cases, 410,350 European ancestry controls	NA	6p22.1		rs2734963-T	0.193283	6E-7		1.2753475	NR	Affymetrix [7846216] (imputed)	N
593	chr6_dbb_hap3	1144532	1144533	rs3094650	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	6p22.1	NR	rs3094650-C	0.722493	3E-16		0.023382017	[0.018-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
593	chr6_dbb_hap3	1144532	1144533	rs3094650	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6p22.1	NR	rs3094650-C	0.72248	3E-29		0.031621024	[0.026-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
593	chr6_dbb_hap3	1144532	1144533	rs3094650	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	6p22.1		rs3094650-C	0.722504	9E-32		0.032617964	[0.027-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
593	chr6_dbb_hap3	1144620	1144621	rs2523809	22075330	Granada M	2011-11-08	J Allergy Clin Immunol	A genome-wide association study of plasma total IgE concentrations in the Framingham Heart Study.	IgE levels	6,819 European ancestry individuals	7,809 European ancestry indivduals	6p22.1	HLA-G	rs2523809-T	NR	4E-8		0.06	[NR] unit increase	Affymetrix [2540223] (imputed)	N
593	chr6_dbb_hap3	1145735	1145736	rs1611579	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6p22.1	HLA-H	rs1611579-C	0.122264	4E-17		0.051560964	[0.04-0.064] unit increase	Affymetrix [93095623] (imputed)	N
593	chr6_dbb_hap3	1145735	1145736	rs1611579	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p22.1	NR	rs1611579-C	0.098	8E-7	(EA)	0.058	[0.035-0.081] unit decrease	Illumina [~ 11800000] (imputed)	N
593	chr6_dbb_hap3	1145842	1145843	rs1611581	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	6p22.1	NR	rs1611581-C	0.682015	5E-8		0.0185265	[0.012-0.025] unit increase	Affymetrix [16577424] (imputed)	N
593	chr6_dbb_hap3	1148454	1148455	rs2523802	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	6p22.1	NR	rs2523802-?	NR	2E-8		0.088	[0.057-0.119] unit decrease	Illumina [at least 560000] (imputed)	N
593	chr6_dbb_hap3	1149586	1149587	rs2734950	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	6p22.1	HLA-H	rs2734950-T	0.402539	6E-12		0.01625928	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
593	chr6_dbb_hap3	1167420	1167421	rs189370103	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	6p22.1	NR	rs189370103-?	NR	8E-6	(Native Hawaiian)	1.0607	[NR] unit increase	Illumina [up to 11892802] (imputed)	N
593	chr6_dbb_hap3	1170992	1170993	rs2517873	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Squamous cell lung carcinoma	8,350 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	6p22.1	NR	rs2517873-A	NR	2E-10		1.23	[1.15-1.31]	NR [NR] (imputed)	N
593	chr6_dbb_hap3	1170992	1170993	rs2517873	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Non-small cell lung cancer	27,120 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	6p22.1	NR	rs2517873-A	NR	5E-11		1.16	[1.11-1.21]	NR [NR] (imputed)	N
593	chr6_dbb_hap3	1170992	1170993	rs2517873	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Lung adenocarcinoma	15,581 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	6p22.1	NR	rs2517873-A	NR	3E-6		1.13	[1.08-1.20]	NR [NR] (imputed)	N
593	chr6_dbb_hap3	1170992	1170993	rs2517873	31326317	Dai J	2019-07-17	Lancet Respir Med	Identification of risk loci and a polygenic risk score for lung cancer: a large-scale prospective cohort study in Chinese populations.	Non-small cell lung cancer	13,327 Chinese ancestry cases, 13,793 European ancestry cases, 13,328 Chinese ancestry controls, 14,027 European ancestry controls	NA	6p22.1	MHC	rs2517873-A	0.145	5E-11		1.16	[1.11-1.21]	Illumina [~ 11000000] (imputed)	N
594	chr6_dbb_hap3	1184248	1184249	rs75460055	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p22.1	NR	rs75460055-T	0.039	5E-18	(conditional)	0.47	[0.3-0.64]	Illumina [11270530] (imputed)	N
594	chr6_dbb_hap3	1185751	1185752	rs1611399	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	HCG4B	rs1611399-C	NR	5E-8		0.0192493	[0.012-0.026] unit decrease	Affymetrix [323858] (imputed)	N
594	chr6_dbb_hap3	1185751	1185752	rs1611399	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	HCG4B	rs1611399-C	NR	4E-8		0.0194622	[0.013-0.026] unit decrease	Affymetrix [127266] (imputed)	N
594	chr6_dbb_hap3	1188579	1188580	rs9259819	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	6p22.1	HLA-J	rs9259819-G	0.5	2E-9		1.036	[1.02-1.05]	Affymetrix, Illumina [8307659] (imputed)	N
594	chr6_dbb_hap3	1192093	1192094	rs389725	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	6p22.1	HCG4B, HLA-U	rs389725-T	0.78328	3E-30		0.03487705	[0.029-0.041] unit decrease	Affymetrix [93095623] (imputed)	N
594	chr6_dbb_hap3	1193080	1193081	rs2975009	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	6p22.1	HCG4B, HLA-U	rs2975009-T	0.4651	7E-24		0.0380916	[0.031-0.046] unit increase	Affymetrix [~ 2500000] (imputed)	N
594	chr6_dbb_hap3	1194589	1194590	rs2471863	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p22.1	HLA-A	rs2471863-C	0.526	8E-7		0.057	[0.033-0.081] unit increase	Affymetrix, Illumina [7374092] (imputed)	N
594	chr6_dbb_hap3	1194639	1194640	rs2524005	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Varicose veins	22,037 European ancestry cases, 437,665 European ancestry controls, 474 East Asian ancestry cases, 178,252 East Asian ancestry controls	NA	6p22.1		rs2524005-A	NR	1E-12		0.0995	[0.072-0.127] unit decrease	Affymetrix, Illumina [25842955] (imputed)	N
594	chr6_dbb_hap3	1194639	1194640	rs2524005	22688191	Bergen SE	2012-06-12	Mol Psychiatry	Genome-wide association study in a Swedish population yields support for greater CNV and MHC involvement in schizophrenia compared with bipolar disorder.	Bipolar disorder and schizophrenia	2,111 European ancestry schizophrenia cases, 836 European ancestry bipolar disorder cases, 2,535 European ancestry controls	NA	6p22.1	other genes, MHC	rs2524005-?	NR	5E-7		1.32	[NR]	Affymetrix [745006]	N
594	chr6_dbb_hap3	1195655	1195656	rs72498354	32339537	Roberts V	2020-04-24	J Invest Dermatol	Genome wide association study identifies genetic associations with perceived age.	Youthful appearance (self-reported)	423,992 European ancestry individuals	NA	6p22.1	HLA-A	rs72498354-C	0.960927	4E-9		0.933287	NR	Affymetrix [~ 9600000] (imputed)	N
594	chr6_dbb_hap3	1196590	1196591	rs410930	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	6p22.1		rs410930-G	0.437235	1E-8		0.024544	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
594	chr6_dbb_hap3	1196831	1196832	rs1611337	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6p22.1		rs1611337-G	0.437603	2E-14		0.0312596	[0.023-0.039] unit decrease	NR [11722792] (imputed)	N
594	chr6_dbb_hap3	1196831	1196832	rs1611337	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	6p22.1		rs1611337-G	0.437688	8E-10		0.0255967	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
594	chr6_dbb_hap3	1196831	1196832	rs1611337	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p22.1		rs1611337-G	0.437603	8E-16		0.0334002	[0.025-0.042] unit decrease	NR [11722792] (imputed)	N
594	chr6_dbb_hap3	1196831	1196832	rs1611337	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6p22.1		rs1611337-G	0.437603	9E-12		0.0276947	[0.02-0.036] unit decrease	NR [11722792] (imputed)	N
594	chr6_dbb_hap3	1196831	1196832	rs1611337	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6p22.1		rs1611337-G	0.437603	1E-13		0.0306584	[0.023-0.039] unit increase	NR [11722792] (imputed)	N
594	chr6_dbb_hap3	1196831	1196832	rs1611337	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	6p22.1		rs1611337-G	0.437688	4E-9		0.0245909	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
594	chr6_dbb_hap3	1196831	1196832	rs1611337	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	6p22.1		rs1611337-G	0.437603	2E-9		0.0245327	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
594	chr6_dbb_hap3	1196831	1196832	rs1611337	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p22.1		rs1611337-G	0.437603	5E-18		0.036723	[0.028-0.045] unit increase	NR [11722792] (imputed)	N
594	chr6_dbb_hap3	1196831	1196832	rs1611337	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6p22.1		rs1611337-G	0.437603	5E-10		0.0250212	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
594	chr6_dbb_hap3	1196831	1196832	rs1611337	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	6p22.1		rs1611337-G	0.437688	5E-8		0.0224294	[0.014-0.03] unit increase	NR [11722792] (imputed)	N
594	chr6_dbb_hap3	1196831	1196832	rs1611337	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p22.1		rs1611337-G	0.437603	4E-17		0.0351407	[0.027-0.043] unit increase	NR [11722792] (imputed)	N
594	chr6_dbb_hap3	1196831	1196832	rs1611337	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6p22.1		rs1611337-G	0.437603	7E-11		0.02633	[0.018-0.034] unit increase	NR [11722792] (imputed)	N
594	chr6_dbb_hap3	1197340	1197341	rs9259970	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6p22.1		rs9259970-G	0.717498	4E-15		0.0371322	[0.028-0.046] unit decrease	NR [11722792] (imputed)	N
594	chr6_dbb_hap3	1197340	1197341	rs9259970	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	6p22.1		rs9259970-G	0.717498	5E-8		0.0259759	[0.017-0.035] unit decrease	NR [11722792] (imputed)	N
594	chr6_dbb_hap3	1197340	1197341	rs9259970	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	6p22.1		rs9259970-G	0.717498	6E-10		0.0286546	[0.02-0.038] unit decrease	NR [11722792] (imputed)	N
594	chr6_dbb_hap3	1198790	1198791	rs3098023	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium HDL	115,082 European ancestry individuals	NA	6p22.1		rs3098023-A	0.863945	3E-9		0.0367615	[0.025-0.049] unit increase	NR [11722792] (imputed)	N
594	chr6_dbb_hap3	1198790	1198791	rs3098023	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large HDL	115,082 European ancestry individuals	NA	6p22.1		rs3098023-A	0.863945	6E-9		0.0349811	[0.023-0.047] unit increase	NR [11722792] (imputed)	N
594	chr6_dbb_hap3	1198790	1198791	rs3098023	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in HDL	115,082 European ancestry individuals	NA	6p22.1		rs3098023-A	0.863945	2E-8		0.0348764	[0.023-0.047] unit increase	NR [11722792] (imputed)	N
594	chr6_dbb_hap3	1198790	1198791	rs3098023	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium HDL	115,082 European ancestry individuals	NA	6p22.1		rs3098023-A	0.863945	3E-13		0.0429887	[0.031-0.055] unit increase	NR [11722792] (imputed)	N
594	chr6_dbb_hap3	1198790	1198791	rs3098023	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in HDL	115,082 European ancestry individuals	NA	6p22.1		rs3098023-A	0.863945	9E-11		0.0369227	[0.026-0.048] unit increase	NR [11722792] (imputed)	N
594	chr6_dbb_hap3	1198804	1198805	rs28749114	33002439	Jin G	2020-10-01	Lancet Oncol	Genetic risk, incident gastric cancer, and healthy lifestyle: a meta-analysis of genome-wide association studies and prospective cohort study.	Gastric cancer	10,254 Han Chinese ancestry cases, 10,914 Han Chinese ancestry controls	NA	6p22.1	NR	rs28749114-A	0.6	5E-9		1.14	NR	Affymetrix, Illumina [6957974] (imputed)	N
594	chr6_dbb_hap3	1198804	1198805	rs28749114	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p22.1	HLA-A	rs28749114-G	0.359	4E-17	(Tapasin-related protein, TAPBPL.6364.7.3)	0.22	[0.16-0.28] unit decrease	Affymetrix [10572788] (imputed)	N
594	chr6_dbb_hap3	1199066	1199067	rs112580141	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HVEM on naive CD8+ T cell	1,247 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p22.1		rs112580141-C	0.37079	2E-8		0.2622	[0.17-0.35] unit increase	Illumina [16410374] (imputed)	N
594	chr6_dbb_hap3	1199301	1199302	rs9260013	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8 on Central Memory CD8+ T cell	2,910 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p22.1		rs9260013-T	0.19942	5E-11		0.2579	[0.18-0.33] unit increase	Illumina [17945467] (imputed)	N
594	chr6_dbb_hap3	1199669	1199670	rs453325	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	6p22.1	HLA-A	rs453325-A	0.7549	2E-8		0.002	[0.0014-0.0026] unit decrease	Affymetrix [15275733] (imputed)	N
594	chr6_dbb_hap3	1200047	1200048	rs2860580	27436580	Cui Q	2016-07-19	Hum Mol Genet	An extended genome-wide association study identifies novel susceptibility loci for nasopharyngeal carcinoma.	Nasopharyngeal carcinoma	1,583 Southern Chinese ancestry cases, 2,979 Southern Chinese ancestry controls	5,463 Southern Chinese ancestry cases, 5,591 Southern Chinese ancestry controls	6p22.1	NR	rs2860580-?	0.62	3E-31		1.89	[1.69-2.13]	Illumina [463250]	N
594	chr6_dbb_hap3	1200047	1200048	rs2860580	20512145	Bei JX	2010-05-30	Nat Genet	A genome-wide association study of nasopharyngeal carcinoma identifies three new susceptibility loci.	Nasopharyngeal carcinoma	1,583 Chinese ancestry cases, 1,894 Chinese ancestry controls	3,507 Chinese ancestry cases, 3,063 Chinese ancestry controls, 284  Chinese ancestry trios	6p22.1	HLA-A	rs2860580-?	0.62	5E-67		1.72	[1.61-1.82]	Illumina [464328]	N
594	chr6_dbb_hap3	1200132	1200133	rs3916500	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p22.1	HLA-A	rs3916500-A	0.94	7E-6		0.0619	[0.035-0.089] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
594	chr6_dbb_hap3	1201191	1201192	rs28749130	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	6p22.1	HLA-A	rs28749130-A	0.290175	2E-20		0.05423409	[0.043-0.066] unit increase	Affymetrix [93095623] (imputed)	N
594	chr6_dbb_hap3	1201251	1201252	rs28749131	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6p22.1	NR	rs28749131-G	0.6706	2E-10		1.041016	[1.03-1.05]	Affymetrix [15688218] (imputed)	N
594	chr6_dbb_hap3	1202163	1202164	rs13203830	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p22.1	NR	rs13203830-?	NR	8E-10				Affymetrix [~ 8270000] (imputed)	N
594	chr6_dbb_hap3	1202392	1202393	rs9260078	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein B2M	5,353 Icelandic ancestry individuals	NA	6p22.1		rs9260078-A	0.3408	3E-12		0.126365	[0.091-0.162] unit increase	Illumina [7506463] (imputed)	N
594	chr6_dbb_hap3	1202576	1202577	rs1632887	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		6p22.1	HLA-A	rs1632887-T	0.725853	2E-12		0.0110934	[0.008-0.0142] unit decrease	Affymetrix [12370749]	N
594	chr6_dbb_hap3	1202639	1202640	rs138847126	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental extreme longevity (95 years and older)	1,339 middle-aged British cases, 40,934 middle-aged British controls	NA	6p22.1	NR	rs138847126-?	NR	7E-6		0.01176	[0.0066-0.0169] unit decrease	Affymetrix [9658292] (imputed)	N
594	chr6_dbb_hap3	1203183	1203184	rs534723171	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p22.1	NR	rs534723171-T	0.061	2E-30	(conditional)	2.735	[2.56-2.91]	Illumina [11270530] (imputed)	N
594	chr6_dbb_hap3	1203718	1203719	rs1143146	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	6p22.1	HLA-A	rs1143146-G	0.462795	8E-17		0.019093748	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
594	chr6_dbb_hap3	1203738	1203739	rs41546314	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p22.1		rs41546314-T	0.309983	5E-23		1.0479736	[1.04-1.05]	Affymetrix, Illumina [9851866] (imputed)	N
594	chr6_dbb_hap3	1203838	1203839	rs9260127	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Triglycerides	429,011 European ancestry individuals	NA	6p22.1		rs9260127-G	0.45	7E-14		0.015	mmol/L decrease	NR [NR] (imputed)	N
594	chr6_dbb_hap3	1203838	1203839	rs9260127	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	6p22.1		rs9260127-G	0.45	3E-20				NR [NR] (imputed)	N
594	chr6_dbb_hap3	1203838	1203839	rs9260127	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	High density lipoprotein cholesterol levels	392,965 European ancestry individuals	NA	6p22.1		rs9260127-G	0.45	4E-13		0.013	mmol/L decrease	NR [NR] (imputed)	N
594	chr6_dbb_hap3	1203838	1203839	rs9260127	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	6p22.1		rs9260127-G	0.45	8E-12		0.01	% increase	NR [NR] (imputed)	N
594	chr6_dbb_hap3	1203838	1203839	rs9260127	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Aspartate aminotransferase levels	424,778 European ancestry individuals	NA	6p22.1		rs9260127-G	0.45	4E-17		0.016	U/L decrease	NR [NR] (imputed)	N
594	chr6_dbb_hap3	1203838	1203839	rs9260127	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	6p22.1	HCG4P5	rs9260127-C	0.554534	6E-12		0.01662031	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
594	chr6_dbb_hap3	1204091	1204092	rs79361534	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p22.1	HLA-A	rs79361534-A		1E-36		0.036	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
594	chr6_dbb_hap3	1204119	1204120	rs1071742	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p22.1		rs1071742-?	NR	2E-17		0.0224179	[0.018-0.027] unit decrease	Affymetrix [20259828] (imputed)	N
594	chr6_dbb_hap3	1204127	1204128	rs1136689	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	6p22.1	HLA-A	rs1136689-C	0.145613	8E-12		0.022252768	[0.016-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
594	chr6_dbb_hap3	1204161	1204162	rs1136692	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	HLA-A, HCG4P5	rs1136692-A	NR	1E-9		0.0207185	[0.014-0.027] unit decrease	Affymetrix [323858] (imputed)	N
594	chr6_dbb_hap3	1204161	1204162	rs1136692	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	HLA-A, HCG4P5	rs1136692-A	NR	1E-9		0.0208558	[0.014-0.028] unit decrease	Affymetrix [127266] (imputed)	N
594	chr6_dbb_hap3	1204390	1204391	rs9260151	29404672	Roshandel D	2018-02-05	Diabetologia	Meta-genome-wide association studies identify a locus on chromosome 1 and multiple variants in the MHC region for serum C-peptide in type 1 diabetes.	C-peptide levels in type I diabetes	3,479 European ancestry individuals	NA	6p22.1	MHC, HLA-A	rs9260151-T	0.09	8E-8				Illumina [7988630] (imputed)	N
594	chr6_dbb_hap3	1204474	1204475	rs3173420	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	6p22.1	HLA-A	rs3173420-A	0.525347	1E-30		0.02624179	[0.022-0.031] unit increase	Affymetrix [93095623] (imputed)	N
594	chr6_dbb_hap3	1204588	1204589	rs9256983	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p22.1	NR	rs9256983-?	NR	5E-6		0.0485	[0.028-0.069] unit increase	Illumina [at least 560000] (imputed)	N
594	chr6_dbb_hap3	1204599	1204600	rs9260155	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p22.1	HLA-A	rs9260155-C	0.420482	2E-24		0.027366111	[0.022-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
594	chr6_dbb_hap3	1204716	1204717	rs3132687	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	6p22.1	NR	rs3132687-?	NR	2E-11	(MIC-A)	0.664201	[0.47-0.86] unit increase	Illumina [11901634] (imputed)	N
594	chr6_dbb_hap3	1205049	1205050	rs9260164	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	6p22.1	HLA-A	rs9260164-C	0.737668	6E-21		0.0151662	[0.012-0.018] unit decrease	Affymetrix [12370749]	N
594	chr6_dbb_hap3	1205835	1205836	rs9260194	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycoprotein acetyls levels	115,082 European ancestry individuals	NA	6p22.1		rs9260194-C	0.511331	5E-17		0.0344827	[0.026-0.043] unit decrease	NR [11722792] (imputed)	N
594	chr6_dbb_hap3	1205872	1205873	rs2975059	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p22.1		rs2975059-T	0.673	3E-55				Affymetrix [10369434] (imputed)	N
594	chr6_dbb_hap3	1205872	1205873	rs2975059	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6p22.1	HLA-A	rs2975059-C	0.327132	2E-74		0.04847726	[0.043-0.054] unit increase	Affymetrix [93095623] (imputed)	N
594	chr6_dbb_hap3	1205972	1205973	rs17882753	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	6p22.1	HLA-A	rs17882753-T	0.1254	6E-21		0.05153304	[0.041-0.062] unit increase	Affymetrix [~ 2500000] (imputed)	N
594	chr6_dbb_hap3	1206673	1206674	rs1061235	21428769	McCormack M	2011-03-24	N Engl J Med	HLA-A*3101 and carbamazepine-induced hypersensitivity reactions in Europeans.	Adverse response to carbamazepine	65 European ancestry cases, 3,987 European ancestry controls	80 European ancestry cases, 257 European ancestry controls	6p22.1	HLA-A*3101	rs1061235-?	NR	1E-7		9.12	[4.03-20.65]	Illumina [~ 1200000] (imputed)	N
594	chr6_dbb_hap3	1207261	1207262	rs34941730	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p22.1	HLA-A	rs34941730-G	0.119	2E-9		0.102	[0.069-0.135] unit decrease	Affymetrix, Illumina [7374092] (imputed)	N
594	chr6_dbb_hap3	1207908	1207909	rs376253	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6p22.1	HLA-A	rs376253-A	NR	3E-10		0.0221166	[0.015-0.029] unit decrease	Affymetrix [321114] (imputed)	N
594	chr6_dbb_hap3	1208148	1208149	rs17179564	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	82,810 East Asian ancestry individuals	NA	6p22.1		rs17179564-A	0.36573	6E-10		0.0301926	[0.021-0.04] unit increase	Illumina [13467171] (imputed)	N
594	chr6_dbb_hap3	1208203	1208204	rs2735099	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p22.1	NR	rs2735099-T	0.417	3E-26	(IFNAR2_of_CD20p)			Illumina [5084123] (imputed)	N
594	chr6_dbb_hap3	1208436	1208437	rs2248162	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	HLA-A	rs2248162-T	NR	3E-8		0.0179351	[0.012-0.024] unit decrease	Affymetrix [323858] (imputed)	N
594	chr6_dbb_hap3	1209262	1209263	rs2517720	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6p22.1	HLA-A	rs2517720-C	0.555569	1E-14		0.022822132	[0.017-0.029] unit increase	Affymetrix [93095623] (imputed)	N
594	chr6_dbb_hap3	1210177	1210178	rs1655901	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	6p22.1	HLA-A	rs1655901-C	0.557583	3E-22		0.02534704	[0.02-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
594	chr6_dbb_hap3	1210258	1210259	rs9260313	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p22.1	HLA-A	rs9260313-C		5E-24		0.02	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
594	chr6_dbb_hap3	1210258	1210259	rs9260313	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	6p22.1	HLA-A	rs9260313-C	0.2875	1E-15		0.03200038	[0.024-0.04] unit increase	Affymetrix [~ 2500000] (imputed)	N
594	chr6_dbb_hap3	1210258	1210259	rs9260313	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	6p22.1	HLA-A	rs9260313-C	0.2876	1E-15		0.03178619	[0.024-0.04] unit increase	Affymetrix [~ 2500000] (imputed)	N
594	chr6_dbb_hap3	1211484	1211485	rs2517713	19664746	Tse KP	2009-08-05	Am J Hum Genet	Genome-wide association study reveals multiple nasopharyngeal carcinoma-associated loci within the HLA region at chromosome 6p21.3.	Nasopharyngeal carcinoma	277 Han Chinese ancestry cases, 285 Han Chinese ancestry controls	635 Han Chinese ancestry cases, 1,640 Han Chinese ancestry controls	6p22.1	HLA-A	rs2517713-A	0.62	4E-20		1.88	[1.65-2.15]	Illumina [480365]	N
594	chr6_dbb_hap3	1212495	1212496	rs9260426	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p22.1		rs9260426-?	NR	6E-27		0.0229231	[0.019-0.027] unit increase	Affymetrix [20259828] (imputed)	N
594	chr6_dbb_hap3	1212495	1212496	rs9260426	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	6p22.1	HLA-A	rs9260426-A	0.498682	2E-8	(women)	0.0236393	[0.015-0.033] unit increase	NR [17166351] (imputed)	N
594	chr6_dbb_hap3	1212495	1212496	rs9260426	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	6p22.1	HLA-A	rs9260426-A	0.498488	3E-11		0.020854	[0.014-0.027] unit increase	NR [17166351] (imputed)	N
594	chr6_dbb_hap3	1213165	1213166	rs7747253	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	6p22.1	HLA-A	rs7747253-C	0.499099	1E-33		0.022146	[0.019-0.026] unit increase	NR [13737936] (imputed)	N
594	chr6_dbb_hap3	1213718	1213719	rs9260489	23417110	Tin A	2013-02-16	Hum Genet	Genome-wide association study identified the human leukocyte antigen region as a novel locus for plasma beta-2 microglobulin.	Beta-2 microglubulin plasma levels	6,728 European ancestry individuals		6p22.1	HLA-A	rs9260489-G	0.58	2E-22		0.04	[0.032-0.048] unit decrease	Affymetrix [2500000] (imputed)	N
594	chr6_dbb_hap3	1213718	1213719	rs9260489	22190364	Patsopoulos NA	2011-12-01	Ann Neurol	Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.	Multiple sclerosis	5,545 European ancestry cases, 12,153 European ancestry controls	NA	6p22.1	HLA-B	rs9260489-T	0.45	1E-11		1.21	[NR]	Affymetrix, Illumina [2529394]	N
594	chr6_dbb_hap3	1213807	1213808	rs9260492	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p22.1		rs9260492-T	0.5	3E-19				Affymetrix [10369434] (imputed)	N
594	chr6_dbb_hap3	1214093	1214094	rs9260500	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p22.1		rs9260500-T	0.5	2E-56				Affymetrix [10369434] (imputed)	N
594	chr6_dbb_hap3	1214422	1214423	rs28749167	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	286 European ancestry cases, 2,652 European ancestry controls, 76 Han Chinese ancestry cases, 889 Han Chinese ancestry controls, 46 South Asian ancestry cases, 501 South Asian ancestry controls, 683 Turkish ancestry cases, 1,721 Turkish ancestry controls	NA	6p22.1	HLA-G	rs28749167-?	NR	2E-9	(conditional on rs2844678, rs12524487, rs17193507 and rs12526858)	1.43	NR	Illumina [up to 4495750] (imputed)	N
594	chr6_dbb_hap3	1214561	1214562	rs9260526	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (underestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	6p22.1	NR	rs9260526-?	NR	5E-9		5.864	NR z score increase	Illumina [at least 830937] (imputed)	N
594	chr6_dbb_hap3	1214848	1214849	rs137886986	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6p22.1	HLA-W	rs137886986-A	0.09576	8E-24		0.039658234	[0.032-0.047] unit increase	Affymetrix [93095623] (imputed)	N
594	chr6_dbb_hap3	1216037	1216038	rs28780071	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	Intrinsic epigenetic age acceleration	34,461 European ancestry individuals	NA	6p22.1	NR	rs28780071-T	0.3313	4E-9		0.2035	[0.14-0.27] unit increase	Affymetrix, Illumina [7567980] (imputed)	N
594	chr6_dbb_hap3	1216110	1216111	rs16896742	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NPTX1	5,365 Icelandic ancestry individuals	NA	6p22.1		rs16896742-G	0.4238	6E-28		0.206363	[0.17-0.24] unit decrease	Illumina [7506463] (imputed)	N
594	chr6_dbb_hap3	1216110	1216111	rs16896742	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	6p22.1	HLA-A	rs16896742-G	0.38	3E-10		0.04	[0.028-0.052] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
594	chr6_dbb_hap3	1216124	1216125	rs9260603	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p22.1	HLA-W	rs9260603-T	NR	2E-8		0.0159518	[0.01-0.021] unit increase	Affymetrix [319769] (imputed)	N
594	chr6_dbb_hap3	1216124	1216125	rs9260603	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p22.1	HLA-W	rs9260603-T	NR	4E-8		0.0156092	[0.01-0.021] unit increase	Affymetrix [319769] (imputed)	N
594	chr6_dbb_hap3	1216450	1216451	rs9260619	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p22.1	NR	rs9260619-?	NR	3E-11		0.2395	[0.17-0.31] unit increase	Illumina [at least 560000] (imputed)	N
594	chr6_dbb_hap3	1216455	1216456	rs9260620	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	6p22.1	HLA-W	rs9260620-G	0.3359	2E-74		0.06971236	[0.062-0.077] unit decrease	Affymetrix [~ 2500000] (imputed)	N
594	chr6_dbb_hap3	1216455	1216456	rs9260620	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	6p22.1	HLA-W	rs9260620-G	0.3358	2E-44		0.05337227	[0.046-0.061] unit decrease	Affymetrix [~ 2500000] (imputed)	N
594	chr6_dbb_hap3	1216455	1216456	rs9260620	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	6p22.1	HLA-W	rs9260620-G	0.3358	4E-40		0.05070884	[0.043-0.058] unit decrease	Affymetrix [~ 2500000] (imputed)	N
594	chr6_dbb_hap3	1216455	1216456	rs9260620	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	6p22.1	HLA-W	rs9260620-G	0.3358	2E-39		0.05008696	[0.043-0.058] unit decrease	Affymetrix [~ 2500000] (imputed)	N
594	chr6_dbb_hap3	1216455	1216456	rs9260620	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	6p22.1	HLA-W	rs9260620-G	0.3358	6E-51		0.05759035	[0.05-0.065] unit decrease	Affymetrix [~ 2500000] (imputed)	N
594	chr6_dbb_hap3	1216455	1216456	rs9260620	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	6p22.1	HLA-W	rs9260620-G	0.3357	4E-53		0.05836372	[0.051-0.066] unit decrease	Affymetrix [~ 2500000] (imputed)	N
594	chr6_dbb_hap3	1216455	1216456	rs9260620	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	6p22.1	HLA-W	rs9260620-G	0.3358	7E-45		0.05377813	[0.046-0.061] unit decrease	Affymetrix [~ 2500000] (imputed)	N
594	chr6_dbb_hap3	1216612	1216613	rs7768235	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p22.1	HLA-W	rs7768235-C	0.514186	1E-16		0.022017317	[0.017-0.027] unit increase	Affymetrix [93095623] (imputed)	N
594	chr6_dbb_hap3	1216612	1216613	rs7768235	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	6p22.1	HLA-W	rs7768235-C	0.514229	5E-14		0.02060967	[0.015-0.026] unit increase	Affymetrix [93095623] (imputed)	N
594	chr6_dbb_hap3	1216612	1216613	rs7768235	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p22.1		rs7768235-?	NR	7E-25		0.0219262	[0.018-0.026] unit increase	Affymetrix [20259828] (imputed)	N
594	chr6_dbb_hap3	1216715	1216716	rs2904758	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	6p22.1	HLA-W	rs2904758-A	0.7187	6E-17		0.03315845	[0.025-0.041] unit decrease	Affymetrix [~ 2500000] (imputed)	N
594	chr6_dbb_hap3	1216787	1216788	rs9260639	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	6p22.1	HLA-W	rs9260639-T	0.1389	2E-14		0.03938988	[0.029-0.05] unit increase	Affymetrix [~ 2500000] (imputed)	N
594	chr6_dbb_hap3	1216867	1216868	rs2571389	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p22.1		rs2571389-T	0.5	1E-30				Affymetrix [10369434] (imputed)	N
594	chr6_dbb_hap3	1216918	1216919	rs2571390	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8 on Effector Memory CD8+ T cell	2,912 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p22.1		rs2571390-C	0.82253	6E-22		0.3643	[0.29-0.44] unit increase	Illumina [17945888] (imputed)	N
594	chr6_dbb_hap3	1217206	1217207	rs2571391	22075330	Granada M	2011-11-08	J Allergy Clin Immunol	A genome-wide association study of plasma total IgE concentrations in the Framingham Heart Study.	IgE levels	6,819 European ancestry individuals	7,809 European ancestry indivduals	6p22.1	HLA-A	rs2571391-C	NR	1E-15		0.06	[NR] unit increase	Affymetrix [2540223] (imputed)	N
594	chr6_dbb_hap3	1217588	1217589	rs2571392	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	6p22.1	HLA-W	rs2571392-A	0.314446	4E-11		0.023026897	[0.016-0.03] unit increase	Affymetrix [93095623] (imputed)	N
594	chr6_dbb_hap3	1217736	1217737	rs2571394	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TAPBPL	5,368 Icelandic ancestry individuals	NA	6p22.1		rs2571394-G	0.3722	1E-15		0.160938	[0.12-0.2] unit decrease	Illumina [7506463] (imputed)	N
594	chr6_dbb_hap3	1217787	1217788	rs17179851	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Gynecologic disease	7,975 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs17179851-?		7E-8		1.11	[1.07-1.15]	Illumina [7645193] (imputed)	N
594	chr6_dbb_hap3	1217787	1217788	rs17179851	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Gynecologic disease	7,315 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs17179851-?		7E-7				Illumina [7645193] (imputed)	N
594	chr6_dbb_hap3	1217889	1217890	rs1808199	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	6p22.1	HLA-W	rs1808199-T	0.092214	4E-22		0.03959165	[0.032-0.048] unit decrease	Affymetrix [93095623] (imputed)	N
594	chr6_dbb_hap3	1218450	1218451	rs114193679	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mumps	31,227 European ancestry cases, 54,153 European ancestry controls	NA	6p22.1	HLA-A	rs114193679-G	0.99	2E-17		1.72	[1.62-1.84]	Illumina [at least 560000] (imputed)	N
594	chr6_dbb_hap3	1218615	1218616	rs17186335	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p22.1	NR	rs17186335-?	NR	3E-8		0.0898	[0.058-0.122] unit decrease	Illumina [at least 560000] (imputed)	N
594	chr6_dbb_hap3	1219224	1219225	rs62392216	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	57 Italian ancestry cases, 931 Italian ancestry controls	NA	6p22.1	HLA-B	rs62392216-?	NR	1E-11				Illumina [4425173] (imputed)	N
594	chr6_dbb_hap3	1219224	1219225	rs62392216	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	229 European ancestry cases, 1,088 European ancestry controls	NA	6p22.1	HLA-G	rs62392216-?	NR	3E-11	(conditional on rs12524487)			Illumina [4388215] (imputed)	N
594	chr6_dbb_hap3	1219724	1219725	rs9260679	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	6p22.1	NR	rs9260679-?	NR	9E-90		20.092	NR z score increase	Illumina [at least 830937] (imputed)	N
594	chr6_dbb_hap3	1220442	1220443	rs2735085	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	HLA-W	rs2735085-A	NR	5E-8		0.0198962	[0.013-0.027] unit decrease	Affymetrix [321016] (imputed)	N
594	chr6_dbb_hap3	1220629	1220630	rs114577328	28043905	Nicoletti P	2016-12-30	Gastroenterology	Association of Liver Injury From Specific Drugs, or Groups of Drugs, With Polymorphisms in HLA and Other Genes in a Genome-Wide Association Study.	Drug-induced liver injury	862 European ancestry cases and 10,588 European ancestry controls	NA	6p22.1	MHC	rs114577328-?	0.01	2E-8		2.7	1.9-3.8	Illumina [505740] (imputed)	N
594	chr6_dbb_hap3	1221069	1221070	rs2571400	34642315	Ferreiro-Iglesias A	2021-10-12	Nat Commun	Germline determinants of humoral immune response to HPV-16 protect against oropharyngeal cancer.	Human papilloma virus 16 positive oropharyngeal cancer	1,078 European ancestry cases, 5,256 European ancestry controls	NA	6p22.1		rs2571400-G	NR	3E-6		1.2905		Illumina [7574753] (imputed)	N
594	chr6_dbb_hap3	1221069	1221070	rs2571400	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	HLA-W	rs2571400-C	NR	5E-8		5.453	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
594	chr6_dbb_hap3	1222421	1222422	rs2517690	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p22.1	NR	rs2517690-?	NR	7E-9				Affymetrix [~ 8270000] (imputed)	N
594	chr6_dbb_hap3	1224287	1224288	rs56262516	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8 on CD28- CD8+ T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p22.1		rs56262516-A	0.27456	1E-11		0.23	[0.16-0.3] unit increase	Illumina [17954496] (imputed)	N
594	chr6_dbb_hap3	1224287	1224288	rs56262516	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8 on CD28+ CD45RA- CD8+ T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p22.1		rs56262516-A	0.27456	7E-13		0.2531	[0.18-0.32] unit increase	Illumina [17954496] (imputed)	N
594	chr6_dbb_hap3	1224693	1224694	rs192543598	31066027	Nicoletti P	2019-05-07	Clin Pharmacol Ther	Shared genetic risk factors across carbamazepine-induced hypersensitivity reactions.	Carbamazepine-induced serious cutaneous adverse reaction	43 European ancestry cases, 10,701 European ancestry controls	NA	6p22.1	NR	rs192543598-G	0.01	2E-12		18.11	[8.03-40.88]	Illumina [5271349] (imputed)	N
594	chr6_dbb_hap3	1225253	1225254	rs2517683	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	6p22.1	HLA-W	rs2517683-C	NR	5E-10		0.0183528	[0.013-0.024] unit decrease	Affymetrix [321788] (imputed)	N
594	chr6_dbb_hap3	1225640	1225641	rs2523933	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	HLA-W	rs2523933-T	NR	2E-9		6.01	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
594	chr6_dbb_hap3	1226573	1226574	rs2517678	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	6p22.1	intergenic	rs2517678-T	0.3811	2E-9		0.02249725	[0.015-0.03] unit increase	Affymetrix [~ 2500000] (imputed)	N
594	chr6_dbb_hap3	1226609	1226610	rs6457109	33574277	Kawai Y	2021-02-11	NPJ Genom Med	Mapping of susceptible variants for cold medicine-related Stevens-Johnson syndrome by whole-genome resequencing.	Cold medicine-related Stevens-Johnson syndrome/toxic epidermal necrolysis (SJS/TEN) with severe ocular complications	133 Japanese ancestry cases, 418 Japanese ancestry controls	NA	6p22.1		rs6457109-C	0.2519	3E-16		4.516		Illumina [7608150]	N
594	chr6_dbb_hap3	1227367	1227368	rs6914699	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	MICD	rs6914699-T	NR	3E-8		5.569	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
594	chr6_dbb_hap3	1227509	1227510	rs6935053	23511034	Yang SK	2013-04-01	Inflamm Bowel Dis	Genome-wide association study of ulcerative colitis in Koreans suggests extensive overlapping of genetic susceptibility with Caucasians.	Ulcerative colitis	388 Korean ancestry cases, 739 Korean ancestry controls	417 Korean ancestry cases, 732 Korean ancestry controls	6p22.1	HCG9	rs6935053-?	NR	2E-6	(Conditioned on rs9271366)			Illumina [581060]	N
594	chr6_dbb_hap3	1228594	1228595	rs3893464	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p22.1		rs3893464-G	0.514	7E-43				Affymetrix [10369434] (imputed)	N
594	chr6_dbb_hap3	1228594	1228595	rs3893464	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	6p22.1	MICD	rs3893464-A	0.4884	7E-54		0.05503962	[0.048-0.062] unit decrease	Affymetrix [~ 2500000] (imputed)	N
594	chr6_dbb_hap3	1228594	1228595	rs3893464	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	6p22.1	MICD	rs3893464-A	0.4883	8E-55		0.05548136	[0.049-0.062] unit decrease	Affymetrix [~ 2500000] (imputed)	N
594	chr6_dbb_hap3	1228594	1228595	rs3893464	21900946	Nakabayashi K	2011-09-08	J Hum Genet	Identification of independent risk loci for Graves' disease within the MHC in the Japanese population.	Graves' disease	1,119 Japanese ancestry cases, 2,718 Japanese ancestry controls	432 Japanese ancestry cases, 1,157 Japanese ancestry controls	6p22.1	MHC	rs3893464-G	0.36	2E-20		1.53	[1.39-1.67]	Perlegen [268068]	N
594	chr6_dbb_hap3	1228749	1228750	rs3893463	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	MICD	rs3893463-T	NR	2E-8		5.65	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
594	chr6_dbb_hap3	1229067	1229068	rs56402621	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	6p22.1	HLA-A, ZNRD1-AS1	rs56402621-T	0.0181	2E-7		0.0330166	[0.021-0.045] unit increase	Affymetrix [11880941] (imputed)	N
594	chr6_dbb_hap3	1229982	1229983	rs9260765	33143745	Andlauer TFM	2020-11-04	BMC Med	Treatment- and population-specific genetic risk factors for anti-drug antibodies against interferon-beta: a GWAS.	Binding antibody response to interferon beta therapy in multiple sclerosis (antibody levels; all treatment preparations)	up to 2,000 German and Swedish ancestry individuals	up to 757 German and Swedish ancestry individuals	6p22.1		rs9260765-C	0.45	5E-11		0.17372645	[0.12-0.23] unit increase	Illumina [8550834] (imputed)	N
594	chr6_dbb_hap3	1230684	1230688	rs60131261	27723757	Jin Y	2016-11-01	Nat Genet	Genome-wide association studies of autoimmune vitiligo identify 23 new risk loci and highlight key pathways and regulatory variants.	Vitiligo	2,853 European ancestry cases and 37,405 European ancestry controls	1,827 European ancestry cases and 2,181 European ancestry controls	6p22.1	HLA-A	rs60131261-?	NR	2E-66		1.535	NR	Illumina [8966411] (imputed)	N
594	chr6_dbb_hap3	1230903	1230904	rs1061539	30566020	Fukaya E	2018-12-01	Circulation	Clinical and Genetic Determinants of Varicose Veins.	Varicose veins	9,577 British ancestry cases, 327,959 British ancestry controls	NA	6p22.1	NR	rs1061539-C	0.83	2E-9		0.113	[0.076-0.15] unit decrease	Affymetrix [10972371] (imputed)	N
594	chr6_dbb_hap3	1231132	1231133	rs2523972	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p22.1	MICD	rs2523972-C	NR	1E-11		0.0191491	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
594	chr6_dbb_hap3	1231132	1231133	rs2523972	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p22.1	MICD	rs2523972-C	NR	1E-10		0.0182302	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
594	chr6_dbb_hap3	1231132	1231133	rs2523972	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	MICD	rs2523972-C	NR	1E-12		0.0200168	[0.014-0.026] unit decrease	Affymetrix [321016] (imputed)	N
594	chr6_dbb_hap3	1231272	1231273	rs1061535	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	6p22.1	NR	rs1061535-?	NR	1E-6		0.0535	[0.032-0.075] unit decrease	Illumina [at least 560000] (imputed)	N
594	chr6_dbb_hap3	1231325	1231326	rs2517671	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	6p22.1	HCG9	rs2517671-G	0.419267	3E-22		0.023432834	[0.019-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
594	chr6_dbb_hap3	1232496	1232497	rs2523968	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p22.1	NR	rs2523968-A	0.429	4E-12	(conditional)	1.132	[1.1-1.17]	Illumina [11270530] (imputed)	N
594	chr6_dbb_hap3	1232927	1232928	rs2523961	29784950	Sawai H	2018-05-21	Sci Rep	Genome-wide association study identified new susceptible genetic variants in HLA class I region for hepatitis B virus-related hepatocellular carcinoma.	Hepatocellular carcinoma in hepatitis B infection	473 Japanese ancestry chronic hepatitis and hepatocellular carcinoma cases, 516 Japanese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma	153 Japanese ancestry chronic hepatitis and hepatocellular carcinoma cases, 614 Japanese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma, 94 Chinese ancestry chronic hepatitis and hepatocellular carcinoma cases, 187 Chinese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma, 185 Thai ancestry chronic hepatitis and hepatocellular carcinoma cases, 198 Thai ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma	6p22.1	HLA	rs2523961-?	NR	6E-11		1.91	[1.56-2.37] Japanese	Affymetrix [447830]	N
594	chr6_dbb_hap3	1232927	1232928	rs2523961	29784950	Sawai H	2018-05-21	Sci Rep	Genome-wide association study identified new susceptible genetic variants in HLA class I region for hepatitis B virus-related hepatocellular carcinoma.	Hepatocellular carcinoma in hepatitis B infection	473 Japanese ancestry chronic hepatitis and hepatocellular carcinoma cases, 516 Japanese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma	153 Japanese ancestry chronic hepatitis and hepatocellular carcinoma cases, 614 Japanese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma, 94 Chinese ancestry chronic hepatitis and hepatocellular carcinoma cases, 187 Chinese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma, 185 Thai ancestry chronic hepatitis and hepatocellular carcinoma cases, 198 Thai ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma	6p22.1	HLA	rs2523961-?	NR	6E-10	(Japanese)	1.91	[1.56-2.37]	Affymetrix [447830]	N
594	chr6_dbb_hap3	1234764	1234765	rs9295825	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p22.1	NR	rs9295825-?	NR	3E-18		0.1197	[0.092-0.147] unit increase	Illumina [at least 560000] (imputed)	N
594	chr6_dbb_hap3	1235146	1235147	rs444252	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Strep throat	52,487 European ancestry cases, 22,017 European ancestry controls	NA	6p22.1	NR	rs444252-?	NR	1E-6		0.0267	[0.016-0.037] unit increase	Illumina [at least 560000] (imputed)	N
594	chr6_dbb_hap3	1235276	1235277	rs2523946	32912934	Li M	2020-09-10	J Am Soc Nephrol	Genome-Wide Meta-Analysis Identifies Three Novel Susceptibility Loci and Reveals Ethnic Heterogeneity of Genetic Susceptibility for IgA Nephropathy.	IgA nephropathy	2,628 Chinese ancestry cases, 11,563 Chinese ancestry controls	6,879 Han Chinese ancestry cases, 9,019 Han Chinese ancestry controls, 1,039 Italian ancestry cases, 1,289 Italian ancestry controls	6p22.1	HLA-A	rs2523946-C	0.5077594888869671	2E-8	(East Asian)	1.2170416	[1.13667796674979-1.3030869883916]	NR [3611808] (imputed)	N
594	chr6_dbb_hap3	1235276	1235277	rs2523946	26028593	Li M	2015-06-01	Nat Commun	Identification of new susceptibility loci for IgA nephropathy in Han Chinese.	IgA nephropathy	1,434 Han Chinese ancestry cases, 10,661 Han Chinese ancestry controls	6,879 Han Chinese ancestry cases, 9,019 Han Chinese ancestry controls	6p22.1	NR	rs2523946-C	0.511	5E-11		1.317	[1.217-1.426]	Illumina [3792949] (imputed)	N
594	chr6_dbb_hap3	1235276	1235277	rs2523946	22197929	Yu XQ	2011-12-25	Nat Genet	A genome-wide association study in Han Chinese identifies multiple susceptibility loci for IgA nephropathy.	IgA nephropathy	1,434 Han Chinese ancestry cases, 4,270 Han Chinese ancestry controls	2,703 Han Chinese ancestry cases, 3,464 Han Chinese ancestry controls	6p22.1	HLA-A	rs2523946-C	0.50	2E-11		1.21	[1.15-1.28]	Illumina [444882]	N
594	chr6_dbb_hap3	1235416	1235417	rs3823355	20410501	Jin Y	2010-04-21	N Engl J Med	Variant of TYR and autoimmunity susceptibility loci in generalized vitiligo.	Vitiligo	1,392 European ancestry cases, 2,629 European ancestry controls	647 European ancestry cases, 1,056 European ancestry controls, 183 European ancestry trios, 1,383 European ancestry individuals from 332 families	6p22.1	HLA-A, HCG9	rs3823355-T	0.29	9E-23		1.5	[1.39-1.63]	Illumina [520460]	N
594	chr6_dbb_hap3	1235719	1235720	rs35835721	33574277	Kawai Y	2021-02-11	NPJ Genom Med	Mapping of susceptible variants for cold medicine-related Stevens-Johnson syndrome by whole-genome resequencing.	Cold medicine-related Stevens-Johnson syndrome/toxic epidermal necrolysis (SJS/TEN) with severe ocular complications	133 Japanese ancestry cases, 418 Japanese ancestry controls	NA	6p22.1		rs35835721-G	0.4624	8E-15		3.091		Illumina [7608150]	N
594	chr6_dbb_hap3	1236007	1236008	rs1960063	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	HCG9	rs1960063-A	NR	4E-10		0.0213735	[0.015-0.028] unit decrease	Affymetrix [323858] (imputed)	N
594	chr6_dbb_hap3	1236007	1236008	rs1960063	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	HCG9	rs1960063-A	NR	4E-10		0.0213569	[0.015-0.028] unit decrease	Affymetrix [127266] (imputed)	N
594	chr6_dbb_hap3	1236400	1236401	rs6904029	24939585	Fransen E	2014-06-18	Eur J Hum Genet	Genome-wide association analysis demonstrates the highly polygenic character of age-related hearing impairment.	Age-related hearing impairment	1,489 European ancestry individuals	NA	6p22.1	HLA-A29.1, HCG9	rs6904029-?		3E-6	(PC3)	0.0464	[NR] unit decrease	Illumina [4167292] (imputed)	N
594	chr6_dbb_hap3	1236987	1236988	rs2394250	23749187	Cortes A	2013-07-01	Nat Genet	Identification of multiple risk variants for ankylosing spondylitis through high-density genotyping of immune-related loci.	Ankylosing spondylitis	9,069 European ancestry cases, 1,550 East Asian ancestry cases, 13,578 European ancestry controls, 1,567 East Asian ancestry controls	NA	6p22.1	HLA-A*0201	rs2394250-?	0.421	8E-51	(EA)	1.541		Illumina [128935]	N
594	chr6_dbb_hap3	1237019	1237020	rs2394251	33269293	Kannambath S	2020-10-16	Open Forum Infect Dis	Genome-Wide Association Study Identifies Novel Colony Stimulating Factor 1 Locus Conferring Susceptibility to Cryptococcosis in Human Immunodeficiency Virus-Infected South Africans.	Cryptococcosis in HIV infection	319 South African ancestry cases, 399 South African ancestry controls	NA	6p22.1	HLA-H	rs2394251-?	NR	9E-6		0.7439	[NR]	Illumina [2686126] (imputed)	N
594	chr6_dbb_hap3	1237046	1237047	rs3823363	34642315	Ferreiro-Iglesias A	2021-10-12	Nat Commun	Germline determinants of humoral immune response to HPV-16 protect against oropharyngeal cancer.	Oropharynx cancer and human papilloma virus 16 negative oropharyngeal cancer	2,359 European ancestry cases, 565 European ancestry controls	NA	6p22.1		rs3823363-A	NR	1E-7		0.8222		Illumina [up to 7574753] (imputed)	N
594	chr6_dbb_hap3	1237792	1237793	rs3823379	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	6p22.1	HLA-A	rs3823379-T	0.487762	1E-16		0.0171763	[0.013-0.021] unit decrease	Affymetrix [NR] (imputed)	N
594	chr6_dbb_hap3	1237877	1237878	rs2735075	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p22.1		rs2735075-T	0.592	2E-18				Affymetrix [10369434] (imputed)	N
594	chr6_dbb_hap3	1239283	1239284	rs3132685	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small HDL	115,082 European ancestry individuals	NA	6p22.1		rs3132685-G	0.865719	1E-10		0.0393348	[0.027-0.051] unit increase	NR [11722792] (imputed)	N
594	chr6_dbb_hap3	1239283	1239284	rs3132685	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	6p22.1		rs3132685-G	0.865719	6E-9		0.0355211	[0.024-0.047] unit decrease	NR [11722792] (imputed)	N
594	chr6_dbb_hap3	1239283	1239284	rs3132685	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small HDL	115,082 European ancestry individuals	NA	6p22.1		rs3132685-G	0.865719	5E-12		0.0418299	[0.03-0.054] unit increase	NR [11722792] (imputed)	N
594	chr6_dbb_hap3	1239283	1239284	rs3132685	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-3 fatty acid levels	115,006 European ancestry individuals	NA	6p22.1		rs3132685-G	0.865725	2E-11		0.0394662	[0.028-0.051] unit increase	NR [11722792] (imputed)	N
594	chr6_dbb_hap3	1239283	1239284	rs3132685	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Monounsaturated fatty acid levels	115,006 European ancestry individuals	NA	6p22.1		rs3132685-G	0.865725	2E-8		0.033954	[0.022-0.046] unit increase	NR [11722792] (imputed)	N
594	chr6_dbb_hap3	1239283	1239284	rs3132685	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small HDL	115,082 European ancestry individuals	NA	6p22.1		rs3132685-G	0.865719	5E-10		0.0372621	[0.026-0.049] unit increase	NR [11722792] (imputed)	N
594	chr6_dbb_hap3	1239283	1239284	rs3132685	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p22.1	NR	rs3132685-A	0.1302	2E-13		0.0131	[0.0096-0.0166] unit decrease	NR [7666894] (imputed)	N
594	chr6_dbb_hap3	1248444	1248445	rs17180647	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p22.1	NR	rs17180647-?	NR	4E-7		0.3884	[0.24-0.54] unit decrease	Illumina [at least 560000] (imputed)	N
594	chr6_dbb_hap3	1253345	1253346	rs7749944	30850646	Tziotzios C	2019-03-08	Nat Commun	Genome-wide association study in frontal fibrosing alopecia identifies four susceptibility loci including HLA-B*07:02.	Frontal fibrosing alopecia	1,016 European ancestry cases, 4,145 European ancestry controls		6p22.1	NR	rs7749944-?	0.006	8E-42		10.06	[7.2-14.1]	Illumina [~ 8000000] (imputed)	N
594	chr6_dbb_hap3	1258174	1258175	rs12110437	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	76 Han Chinese ancestry cases, 889 Han Chinese ancestry controls	NA	6p22.1	HLA-G	rs12110437-?	NR	2E-10				Illumina [3403929] (imputed)	N
594	chr6_dbb_hap3	1263934	1263935	rs7758512	20041166	Fellay J	2009-12-24	PLoS Genet	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	6p22.1	HLA-A, ZNRD1, RNF39	rs7758512-?	NR	2E-8	(progression)			Illumina [NR]	N
594	chr6_dbb_hap3	1264306	1264307	rs3094146	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total concentration of lipoprotein particles	115,082 European ancestry individuals	NA	6p22.1		rs3094146-G	0.871463	2E-9		0.0352048	[0.024-0.047] unit increase	NR [11722792] (imputed)	N
594	chr6_dbb_hap3	1264306	1264307	rs3094146	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Polyunsaturated fatty acid levels	115,006 European ancestry individuals	NA	6p22.1		rs3094146-G	0.871472	2E-13		0.0443955	[0.033-0.056] unit increase	NR [11722792] (imputed)	N
594	chr6_dbb_hap3	1264306	1264307	rs3094146	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6p22.1		rs3094146-G	0.871463	1E-8		0.0355971	[0.023-0.048] unit decrease	NR [11722792] (imputed)	N
594	chr6_dbb_hap3	1264306	1264307	rs3094146	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphoglycerides levels	115,006 European ancestry individuals	NA	6p22.1		rs3094146-G	0.871472	3E-10		0.0370038	[0.026-0.049] unit increase	NR [11722792] (imputed)	N
594	chr6_dbb_hap3	1264306	1264307	rs3094146	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphatidylcholine levels	115,006 European ancestry individuals	NA	6p22.1		rs3094146-G	0.871472	3E-9		0.0343894	[0.023-0.046] unit increase	NR [11722792] (imputed)	N
594	chr6_dbb_hap3	1264306	1264307	rs3094146	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	6p22.1		rs3094146-G	0.871463	5E-10		0.0351913	[0.024-0.046] unit increase	NR [11722792] (imputed)	N
594	chr6_dbb_hap3	1264306	1264307	rs3094146	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium HDL particles	115,082 European ancestry individuals	NA	6p22.1		rs3094146-G	0.871463	2E-11		0.0384568	[0.027-0.05] unit increase	NR [11722792] (imputed)	N
594	chr6_dbb_hap3	1264306	1264307	rs3094146	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of HDL particles	115,082 European ancestry individuals	NA	6p22.1		rs3094146-G	0.871463	4E-10		0.0365016	[0.025-0.048] unit increase	NR [11722792] (imputed)	N
594	chr6_dbb_hap3	1264306	1264307	rs3094146	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	6p22.1		rs3094146-G	0.871463	2E-9		0.034562	[0.023-0.046] unit increase	NR [11722792] (imputed)	N
594	chr6_dbb_hap3	1264306	1264307	rs3094146	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein A1 levels	115,082 European ancestry individuals	NA	6p22.1		rs3094146-G	0.871463	9E-11		0.036855	[0.026-0.048] unit increase	NR [11722792] (imputed)	N
594	chr6_dbb_hap3	1264306	1264307	rs3094146	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p22.1	ZNRD1-AS1	rs3094146-C	NR	4E-10		0.0289428	[0.02-0.038] unit decrease	Affymetrix [323858] (imputed)	N
594	chr6_dbb_hap3	1264306	1264307	rs3094146	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Help-seeking from a GP (without major depressive disorder symptoms)	8,632 British ancestry cases, 49,493 British ancestry controls	NA	6p22.1	NR	rs3094146-G	0.87	5E-8		1.1494253	[1.10-1.20]	NR [5276842] (imputed)	N
594	chr6_dbb_hap3	1264306	1264307	rs3094146	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p22.1	NR	rs3094146-C	0.1057	7E-7	(EA)	0.0543	[0.033-0.076] unit decrease	Illumina [~ 11800000] (imputed)	N
594	chr6_dbb_hap3	1267267	1267268	rs4313034	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p22.1		rs4313034-T	0.825373	2E-18		1.048594	[1.04-1.06]	Affymetrix, Illumina [9851866] (imputed)	N
594	chr6_dbb_hap3	1267267	1267268	rs4313034	21900946	Nakabayashi K	2011-09-08	J Hum Genet	Identification of independent risk loci for Graves' disease within the MHC in the Japanese population.	Graves' disease	1,119 Japanese ancestry cases, 2,718 Japanese ancestry controls	432 Japanese ancestry cases, 1,157 Japanese ancestry controls	6p22.1	MHC	rs4313034-T	0.83	2E-15		1.67	[1.47-1.90]	Perlegen [268068]	N
594	chr6_dbb_hap3	1271211	1271212	rs886997	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Asthma	13,015 East Asian ancestry cases, 162,933 East Asian ancestry controls	NA	6p22.1		rs886997-T	0.201391947	2E-10		0.10704092	[0.074-0.14] unit increase	Illumina [13429513] (imputed)	N
594	chr6_dbb_hap3	1271694	1271695	rs4713281	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p22.1	HLA-J, NCRNA00171	rs4713281-A	0.28	1E-6	(EA)	1.97	[1.49-2.59]	Illumina [up to 547389]	N
594	chr6_dbb_hap3	1279684	1279685	rs3115631	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	ZNRD1-AS1	rs3115631-A	NR	4E-17		0.0400652	[0.031-0.049] unit decrease	Affymetrix [323858] (imputed)	N
594	chr6_dbb_hap3	1279684	1279685	rs3115631	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	ZNRD1-AS1	rs3115631-A	NR	2E-16		0.0390685	[0.03-0.048] unit decrease	Affymetrix [127266] (imputed)	N
594	chr6_dbb_hap3	1279684	1279685	rs3115631	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Major depressive disorder (lifetime)	16,301 British ancestry cases, 50,870 British ancestry controls	NA	6p22.1	NR	rs3115631-?	NR	4E-7		1.1037527	[1.06-1.15]	NR [5276842] (imputed)	N
594	chr6_dbb_hap3	1279684	1279685	rs3115631	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Help-seeking from a GP	113,262 British ancestry cases, 219,360 British ancestry controls	NA	6p22.1	NR	rs3115631-T	0.874	3E-13		1.059322	[1.04-1.08]	NR [5276842] (imputed)	N
594	chr6_dbb_hap3	1295396	1295397	rs62388754	30850646	Tziotzios C	2019-03-08	Nat Commun	Genome-wide association study in frontal fibrosing alopecia identifies four susceptibility loci including HLA-B*07:02.	Frontal fibrosing alopecia	1,016 European ancestry cases, 4,145 European ancestry controls		6p22.1	NR	rs62388754-?	0.058	5E-32		2.76	[2.33-3.27]	Illumina [~ 8000000] (imputed)	N
594	chr6_dbb_hap3	1299446	1299447	rs4711207	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Allergic rhinitis	4,387 European ancestry cases, 471,273 European ancestry controls, 7,897 East Asian ancestry cases, 153,666 East Asian ancestry controls	NA	6p22.1		rs4711207-A	NR	2E-8		0.087	[0.057-0.117] unit decrease	Affymetrix, Illumina [25843170] (imputed)	N
594	chr6_dbb_hap3	1299446	1299447	rs4711207	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p22.1	NR	rs4711207-A	0.366	3E-19	(IFNAR2_of_CD20p)			Illumina [5084123] (imputed)	N
594	chr6_dbb_hap3	1302445	1302446	rs3910312	35232999	Garcia-Etxebarria K	2022-03-01	Sci Rep	Local genetic variation of inflammatory bowel disease in Basque population and its effect in risk prediction.	Ulcerative colitis	208 European ancestry cases, 935 European ancestry controls	NA	6p22.1		rs3910312-C	0.255	7E-7		1.8		Illumina [5409651] (imputed)	N
594	chr6_dbb_hap3	1307588	1307589	rs9261224	31217265	Sliz E	2019-06-19	J Med Genet	Genome-wide association study identifies seven novel loci associating with circulating cytokines and cell adhesion molecules in Finns.	Interleukin-1-beta levels	13,577 Finnish ancestry individuals	NA	6p22.1	HLA	rs9261224-T	0.035	1E-9		0.261	unit increase	Illumina [NR] (imputed)	N
595	chr6_dbb_hap3	1310780	1310781	rs6917603	31217265	Sliz E	2019-06-19	J Med Genet	Genome-wide association study identifies seven novel loci associating with circulating cytokines and cell adhesion molecules in Finns.	Interleukin-1-beta levels	13,577 Finnish ancestry individuals	NA	6p22.1	HLA	rs6917603-C	0.251	2E-12		0.163	unit decrease	Illumina [NR] (imputed)	N
595	chr6_dbb_hap3	1310780	1310781	rs6917603	22286219	Kettunen J	2012-01-29	Nat Genet	Genome-wide association study identifies multiple loci influencing human serum metabolite levels.	Lipid metabolism phenotypes	8,330 European ancestry individuals	NA	6p22.1	PPP1R11	rs6917603-?	NR	3E-29	(XXL-VLDL-P)	0.24	[0.2-0.28] unit decrease	Illumina [~ 7700000] (imputed)	N
595	chr6_dbb_hap3	1316808	1316809	rs9261259	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	ZNRD1-AS1	rs9261259-C	NR	2E-16		0.0319539	[0.024-0.04] unit decrease	Affymetrix [127266] (imputed)	N
595	chr6_dbb_hap3	1319232	1319233	rs259919	32276964	Shete S	2020-04-10	Cancer Res	A genome-wide association study identifies two novel susceptible regions for squamous cell carcinoma of the head and neck.	Head and neck squamous cell carcinoma	2,171 European ancestry cases, 4,493 European ancestry controls	5,205 European ancestry cases, 3,232 European ancestry controls	6p22.1	ZNRD1-AS1	rs259919-A	0.28	3E-9		1.17	[1.11-1.24]	Illumina [7858089] (imputed)	N
595	chr6_dbb_hap3	1319232	1319233	rs259919	20041166	Fellay J	2009-12-24	PLoS Genet	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	6p22.1	ZNRD1, C6orf12	rs259919-?	NR	3E-7	(setpoint)			Illumina [NR]	N
595	chr6_dbb_hap3	1323843	1323844	rs9261269	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p22.1	ZintergenicD1	rs9261269-A		4E-32		0.038	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
595	chr6_dbb_hap3	1326245	1326246	rs8321	23453885	Smoller JW	2013-02-27	Lancet	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NA	6p22.1	MHC region	rs8321-?	NR	8E-9	(5 degree of freedom test)	1.081	[1.04-1.12]	NR [1252901] (imputed)	N
595	chr6_dbb_hap3	1326245	1326246	rs8321	19115949	Limou S	2009-01-01	J Infect Dis	Genomewide association study of an AIDS-nonprogression cohort emphasizes the role played by HLA genes (ANRS Genomewide Association Study 02).	AIDS progression	275 European ancestry seropositive non-progressors, 86 European ancestry seropositive rapid progressors, 1,352 European ancestry seronegative controls	(see Fellay 2007)	6p22.1	ZNRD1, RNF39	rs8321-G	NR	5E-7				Illumina [291119]	N
595	chr6_dbb_hap3	1329064	1329065	rs9261281	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p22.1		rs9261281-?	NR	1E-9		0.0377761	[0.026-0.05] unit increase	Affymetrix [20259828] (imputed)	N
595	chr6_dbb_hap3	1331713	1331714	rs6539	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	6p22.1	NR	rs6539-?	NR	3E-6		0.0618	[0.036-0.088] unit increase	Illumina [at least 560000] (imputed)	N
595	chr6_dbb_hap3	1332963	1332964	rs2301753	26534935	Weng L	2015-11-03	Physiol Genomics	Genetic loci associated with nonobstructive coronary artery disease in Caucasian women.	Nonobstructive coronary artery disease	332 European ancestry female cases, 1,003 European ancestry female controls	NA	6p22.1	RNF39	rs2301753-?	0.883	7E-7		2.5	[1.75-3.57]	Illumina [52371]	N
595	chr6_dbb_hap3	1334014	1334015	rs10947050	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Chickenpox	107,769 European ancestry cases, 15,982 European ancestry controls	NA	6p22.1	NR	rs10947050-?	NR	1E-10		0.0904	[0.063-0.118] unit decrease	Illumina [at least 560000] (imputed)	N
595	chr6_dbb_hap3	1336723	1336724	rs142979264	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs142979264-?		6E-8		1.06	[1.04-1.09]	Illumina [7645193] (imputed)	N
595	chr6_dbb_hap3	1336723	1336724	rs142979264	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs142979264-?		7E-9		1.84	[1.50-2.26]	Illumina [7645193] (imputed)	N
595	chr6_dbb_hap3	1346666	1346667	rs1264712	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	AL669914.1	rs1264712-A	NR	9E-17		0.0323321	[0.025-0.04] unit decrease	Affymetrix [323858] (imputed)	N
595	chr6_dbb_hap3	1346666	1346667	rs1264712	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p22.1	AL669914.1	rs1264712-A	NR	4E-10		0.0241409	[0.017-0.032] unit decrease	Affymetrix [323858] (imputed)	N
595	chr6_dbb_hap3	1349534	1349535	rs142292417	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	6p22.1		rs142292417-T	0.984003	1E-8		0.0906224	[0.059-0.122] unit increase	NR [11722792] (imputed)	N
595	chr6_dbb_hap3	1353770	1353771	rs3132681	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p22.1		rs3132681-C	0.603	1E-38				Affymetrix [10369434] (imputed)	N
595	chr6_dbb_hap3	1353770	1353771	rs3132681	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	ENSG00000252901	rs3132681-A	NR	2E-8		5.598	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
595	chr6_dbb_hap3	1355098	1355099	rs9261387	28394258	Wild PS	2017-04-10	J Clin Invest	Large-scale genome-wide analysis identifies genetic variants associated with cardiac structure and function.	Isovolumetric relaxation time	21,852 European ancestry individuals	14,787 European ancestry individuals	6p22.1	TRIM31	rs9261387-C	0.92	7E-7		0.003	[0.001-0.005] unit increase	Affymetrix, Illumina [at least 283291] (imputed)	N
595	chr6_dbb_hap3	1357406	1357407	rs1264705	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium HDL	115,082 European ancestry individuals	NA	6p22.1		rs1264705-G	0.868792	2E-12		0.0396576	[0.029-0.051] unit increase	NR [11722792] (imputed)	N
595	chr6_dbb_hap3	1358885	1358886	rs1156533	33888516	Zheng T	2021-04-22	Gut	Genome-wide analysis of 944 133 individuals provides insights into the etiology of haemorrhoidal disease.	Haemorrhoidal disease	218,920 European ancestry cases, 725,213 European ancestry controls	NA	6p22.1	TRIM31	rs1156533-?	0.2952	2E-8		0.98	[0.97-0.98]	Affymetrix, Illumina [8494288] (imputed)	N
595	chr6_dbb_hap3	1359279	1359280	rs17187854	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	6p22.1	intergenic	rs17187854-T	0.0032	3E-12		0.2201749	[0.16-0.28] unit decrease	Affymetrix [~ 2500000] (imputed)	N
595	chr6_dbb_hap3	1359767	1359768	rs916570	31272903	Sunadome H	2019-07-01	Allergol Int	Correlation between eosinophil count, its genetic background and body mass index: The Nagahama Study.	Eosinophil counts	4,650 East Asian ancestry individuals	NA	6p22.1	NR	rs916570-G	0.19	1E-7		0.1384	NR unit increase	Illumina [103680] (imputed)	N
595	chr6_dbb_hap3	1359767	1359768	rs916570	31272903	Sunadome H	2019-07-01	Allergol Int	Correlation between eosinophil count, its genetic background and body mass index: The Nagahama Study.	Eosinophil counts	4,206 East Asian ancestry individuals	NA	6p22.1	NR	rs916570-G	0.19	3E-7		0.1428	NR unit increase	Illumina [103680] (imputed)	N
595	chr6_dbb_hap3	1360718	1360720	rs143211693	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	6p22.1	Intergenic	rs143211693-?	NR	5E-6		0.0195207	[0.011-0.028] unit increase	Illumina [13519193] (imputed)	N
595	chr6_dbb_hap3	1360718	1360720	rs143211693	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p22.1	Intergenic	rs143211693-?	NR	2E-6		0.0186889	[0.011-0.026] unit increase	Illumina [13520550] (imputed)	N
595	chr6_dbb_hap3	1360718	1360720	rs143211693	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	6p22.1	Intergenic	rs143211693-?	NR	4E-9		0.026814	[0.018-0.036] unit increase	Illumina [13520550] (imputed)	N
595	chr6_dbb_hap3	1361292	1361293	rs1264697	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	76 Han Chinese ancestry cases, 889 Han Chinese ancestry controls	NA	6p22.1	TRIM31	rs1264697-?	NR	1E-8	(conditional on rs12110437)			Illumina [3403929] (imputed)	N
595	chr6_dbb_hap3	1362337	1362338	rs13214608	33831438	Williams JE	2021-04-05	Genomics	Key genetic variants associated with variation of milk oligosaccharides from diverse human populations.	Human milk oligosaccharide concentration (lacto-N-fucopentaose III) in non-secretors	90 European, Sub-Saharan African, Hispanic or unknown ancestry individuals	NA	6p22.1		rs13214608-?	NR	3E-11				Illumina [1128286]	N
595	chr6_dbb_hap3	1363705	1363706	rs1111180	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	6p22.1	TRIM31-AS1	rs1111180-C	0.5667	4E-37		0.04561007	[0.039-0.053] unit decrease	Affymetrix [~ 2500000] (imputed)	N
595	chr6_dbb_hap3	1363705	1363706	rs1111180	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	6p22.1	TRIM31-AS1	rs1111180-C	0.5666	2E-35		0.04474978	[0.038-0.052] unit decrease	Affymetrix [~ 2500000] (imputed)	N
595	chr6_dbb_hap3	1364661	1364662	rs1110446	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6p22.1		rs1110446-?	NR	3E-6		1.05914	[1.04-1.08]	NR [685523]	N
595	chr6_dbb_hap3	1364661	1364662	rs1110446	29784950	Sawai H	2018-05-21	Sci Rep	Genome-wide association study identified new susceptible genetic variants in HLA class I region for hepatitis B virus-related hepatocellular carcinoma.	Hepatocellular carcinoma in hepatitis B infection	473 Japanese ancestry chronic hepatitis and hepatocellular carcinoma cases, 516 Japanese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma	153 Japanese ancestry chronic hepatitis and hepatocellular carcinoma cases, 614 Japanese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma, 94 Chinese ancestry chronic hepatitis and hepatocellular carcinoma cases, 187 Chinese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma, 185 Thai ancestry chronic hepatitis and hepatocellular carcinoma cases, 198 Thai ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma	6p22.1	HLA	rs1110446-?	NR	9E-13		1.93	[1.57-2.37] Japanese	Affymetrix [447830]	N
595	chr6_dbb_hap3	1364661	1364662	rs1110446	29784950	Sawai H	2018-05-21	Sci Rep	Genome-wide association study identified new susceptible genetic variants in HLA class I region for hepatitis B virus-related hepatocellular carcinoma.	Hepatocellular carcinoma in hepatitis B infection	473 Japanese ancestry chronic hepatitis and hepatocellular carcinoma cases, 516 Japanese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma	153 Japanese ancestry chronic hepatitis and hepatocellular carcinoma cases, 614 Japanese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma, 94 Chinese ancestry chronic hepatitis and hepatocellular carcinoma cases, 187 Chinese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma, 185 Thai ancestry chronic hepatitis and hepatocellular carcinoma cases, 198 Thai ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma	6p22.1	HLA	rs1110446-?	NR	3E-10	(Japanese)	1.93	[1.57-2.37]	Affymetrix [447830]	N
595	chr6_dbb_hap3	1365054	1365055	rs1116221	32771030	Tangtanatakul P	2020-08-08	Arthritis Res Ther	Meta-analysis of genome-wide association study identifies FBN2 as a novel locus associated with systemic lupus erythematosus in Thai population.	Systemic lupus erythematosus	487 Thai cases, 1,606 Thai controls	405 Thai cases, 1,590 Thai controls	6p22.1	TRIM31	rs1116221-A	0.08	3E-6		1.594	[NR]	Illumina [421909] (imputed)	N
595	chr6_dbb_hap3	1366349	1366350	rs3094136	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p22.1	NR	rs3094136-C	0.44	2E-6	(IFNAR2_of_CD4p_T)			Illumina [5084123] (imputed)	N
595	chr6_dbb_hap3	1366532	1366533	rs111537560	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mumps	31,227 European ancestry cases, 54,153 European ancestry controls	NA	6p22.1	NR	rs111537560-?	NR	5E-16		0.5917	[0.45-0.74] unit increase	Illumina [at least 560000] (imputed)	N
595	chr6_dbb_hap3	1366919	1366920	rs3132680	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6p22.1	RNF39	rs3132680-?	NR	7E-6	(SM 18:0)	0.17183183	[0.097-0.247] unit decrease	Affymetrix [at least 2500000] (imputed)	N
595	chr6_dbb_hap3	1366983	1366984	rs2517664	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p22.1		rs2517664-T	0.816537	9E-13		1.0407012	[1.03-1.05]	Affymetrix, Illumina [9851866] (imputed)	N
595	chr6_dbb_hap3	1366983	1366984	rs2517664	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	TRIM31-AS1	rs2517664-T	NR	1E-8		5.707	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
595	chr6_dbb_hap3	1367154	1367155	rs6915823	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	6p22.1	NR	rs6915823-?	NR	1E-23		10.046	NR z score decrease	Illumina [at least 830937] (imputed)	N
595	chr6_dbb_hap3	1367500	1367501	rs7767188	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	6p22.1	NR	rs7767188-A	0.21	2E-8		1.06	[1.04-1.08]	Illumina [20370935] (imputed)	N
595	chr6_dbb_hap3	1367571	1367572	rs2844795	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total phospholipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	6p22.1		rs2844795-C	0.480583	2E-9		0.0234643	[0.016-0.031] unit decrease	NR [11722792] (imputed)	N
595	chr6_dbb_hap3	1367571	1367572	rs2844795	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	6p22.1		rs2844795-C	0.480583	2E-9		0.0242799	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
595	chr6_dbb_hap3	1367571	1367572	rs2844795	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total fatty acid levels	115,006 European ancestry individuals	NA	6p22.1		rs2844795-C	0.480588	2E-9		0.0242374	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
595	chr6_dbb_hap3	1367571	1367572	rs2844795	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholines levels	115,006 European ancestry individuals	NA	6p22.1		rs2844795-C	0.480588	6E-9		0.0224748	[0.015-0.03] unit decrease	NR [11722792] (imputed)	N
595	chr6_dbb_hap3	1367571	1367572	rs2844795	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-6 fatty acid levels	115,006 European ancestry individuals	NA	6p22.1		rs2844795-C	0.480588	5E-13		0.0289827	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
595	chr6_dbb_hap3	1367571	1367572	rs2844795	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Linoleic acid levels	115,006 European ancestry individuals	NA	6p22.1		rs2844795-C	0.480588	4E-14		0.0305085	[0.023-0.038] unit decrease	NR [11722792] (imputed)	N
595	chr6_dbb_hap3	1367571	1367572	rs2844795	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	6p22.1		rs2844795-C	0.480583	3E-8		0.0227871	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
595	chr6_dbb_hap3	1367796	1367797	rs2517601	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in diabetes	70,762 European ancestry individuals, 20,967 African American individuals	NA	6p22.1	TRIM31	rs2517601-C	0.115	4E-12		0.956	[0.69-1.23] unit decrease	Affymetrix [NR] (imputed)	N
595	chr6_dbb_hap3	1367796	1367797	rs2517601	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p22.1	NR	rs2517601-C	0.1326	5E-13		0.0126	[0.0093-0.0159] unit decrease	NR [7666894] (imputed)	N
595	chr6_dbb_hap3	1368034	1368035	rs78026509	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	6p22.1	TRIM31, TRIM31-AS1	rs78026509-G	0.0759	2E-9		0.04028003	[0.027-0.053] unit decrease	Affymetrix [~ 2500000] (imputed)	N
595	chr6_dbb_hap3	1368827	1368828	rs2523992	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p22.1	NR	rs2523992-G	0.1571	2E-7	(EA)	0.0468	[0.029-0.064] unit decrease	Illumina [~ 11800000] (imputed)	N
595	chr6_dbb_hap3	1369589	1369590	rs2023472	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p22.1		rs2023472-A	0.411	6E-25				Affymetrix [10369434] (imputed)	N
595	chr6_dbb_hap3	1369589	1369590	rs2023472	23417110	Tin A	2013-02-16	Hum Genet	Genome-wide association study identified the human leukocyte antigen region as a novel locus for plasma beta-2 microglobulin.	Beta-2 microglubulin plasma levels	6,728 European ancestry individuals		6p22.1	TRIM31	rs2023472-A	0.38	3E-15		0.03	[0.022-0.038] unit increase	Affymetrix [2500000] (imputed)	N
595	chr6_dbb_hap3	1369842	1369843	rs11961190	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	6p22.1	TRIM31, TRIM31-AS1	rs11961190-T	0.00312500000000004	2E-22		0.19694449	[0.16-0.24] unit decrease	Affymetrix [93095623] (imputed)	N
595	chr6_dbb_hap3	1369842	1369843	rs11961190	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6p22.1	TRIM31, TRIM31-AS1	rs11961190-T	0.00312500000000004	1E-23		0.20271449	[0.16-0.24] unit decrease	Affymetrix [93095623] (imputed)	N
595	chr6_dbb_hap3	1369842	1369843	rs11961190	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	6p22.1	TRIM31, TRIM31-AS1	rs11961190-T	0.00311799999999995	3E-29		0.22552978	[0.19-0.26] unit decrease	Affymetrix [93095623] (imputed)	N
595	chr6_dbb_hap3	1369842	1369843	rs11961190	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6p22.1	TRIM31, TRIM31-AS1	rs11961190-T	0.00311700000000004	4E-27		0.21662813	[0.18-0.26] unit decrease	Affymetrix [93095623] (imputed)	N
595	chr6_dbb_hap3	1370379	1370380	rs9261418	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	6p22.1	TRIM15	rs9261418-A	0.144604	2E-8		5.61	z score increase	NR [10847151] (imputed)	N
595	chr6_dbb_hap3	1370854	1370855	rs9378220	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	6p22.1	TRIM31	rs9378220-?	NR	4E-18		0.0309	[0.025-0.037] unit increase	Affymetrix [5701386] (imputed)	N
595	chr6_dbb_hap3	1370948	1370949	rs2523990	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	6p22.1	TRIM31, TRIM31-AS1	rs2523990-G	0.538375	2E-32		0.029605733	[0.025-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
595	chr6_dbb_hap3	1370948	1370949	rs2523990	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6p22.1	TRIM31, TRIM31-AS1	rs2523990-G	0.538376	5E-71		0.044279587	[0.039-0.049] unit decrease	Affymetrix [93095623] (imputed)	N
595	chr6_dbb_hap3	1371993	1371994	rs2523989	33909500	Moll M	2021-04-28	Am J Physiol Lung Cell Mol Physiol	A Systematic Analysis of Protein-altering Exonic Variants in Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease	up to 31,465 European ancestry cases, up to 203,688 European ancestry controls, up to 1,413 African ancestry cases, up to 6,080 African ancestry controls, up to 287 East Asian ancestry cases, up to 7,484 East Asian ancestry controls, up to 61 Hispanic cases, up to 613 Hispanic controls	NA	6p22.1	TRIM31	rs2523989-T	0.17	1E-10		1.09	[1.06 -1.12]	Illumina [at least 109036]	N
595	chr6_dbb_hap3	1371993	1371994	rs2523989	25936594	Tomer Y	2015-04-27	J Autoimmun	Genome wide identification of new genes and pathways in patients with both autoimmune thyroiditis and type 1 diabetes.	Type 1 diabetes and autoimmune thyroid diseases	346 European ancestry cases, 727 European ancestry controls	185 European ancestry cases, 340 European ancestry controls	6p22.1	TRIM31	rs2523989-A	NR	2E-8		1.7499		Illumina [514008]	N
595	chr6_dbb_hap3	1373710	1373711	rs2523987	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p22.1	TRIM31, TRIM31-AS1, TRIM40, SNORA48	rs2523987-C	0.1149598	2E-13	(EA, MHC class I polypeptide-related sequence A)	0.4957	[0.36-0.63] unit increase	Affymetrix [509946]	N
595	chr6_dbb_hap3	1374825	1374826	rs9261425	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	6p22.1	NR	rs9261425-?	NR	6E-7		0.0545	[0.033-0.076] unit increase	Illumina [at least 560000] (imputed)	N
595	chr6_dbb_hap3	1375459	1375460	rs28780084	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p22.1	NR	rs28780084-?	NR	9E-8		0.0841	[0.053-0.115] unit decrease	Illumina [at least 560000] (imputed)	N
595	chr6_dbb_hap3	1377425	1377426	rs2523978	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	6p22.1	TRIM31	rs2523978-C	0.869967	4E-24		0.0286531	[0.023-0.034] unit increase	Affymetrix [NR] (imputed)	N
595	chr6_dbb_hap3	1377425	1377426	rs2523978	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	6p22.1	TRIM31	rs2523978-C	0.869885	7E-28		0.031888	[0.026-0.038] unit increase	Affymetrix [NR] (imputed)	N
595	chr6_dbb_hap3	1380139	1380140	rs9261431	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p22.1	NR	rs9261431-?	NR	2E-19		0.1221	[0.095-0.149] unit increase	Illumina [at least 560000] (imputed)	N
595	chr6_dbb_hap3	1381326	1381327	rs115254023	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6p22.1		rs115254023-T	0.018886	8E-29		0.092888236	[0.077-0.109] unit increase	Affymetrix [93095623] (imputed)	N
595	chr6_dbb_hap3	1386655	1386656	rs1419674	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p22.1	NR	rs1419674-T	0.02787	7E-9	(SBDS)	0.03953	NR unit increase	Illumina [1671387] (imputed)	N
595	chr6_dbb_hap3	1386857	1386858	rs2517592	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	SNORA48	rs2517592-T	NR	5E-8		5.465	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
595	chr6_dbb_hap3	1387084	1387085	rs10947055	21348951	Parsa A	2011-02-01	Clin Transl Sci	Hypertrophy-associated polymorphisms ascertained in a founder cohort applied to heart failure risk and mortality.	Cardiac hypertrophy	851 Old Order Amish individuals	NA	6p22.1	TRIM38	rs10947055-?	NR	2E-7	(additive, recessive)			Affymetrix [361034]	N
595	chr6_dbb_hap3	1387833	1387834	rs2844790	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	SNORA48	rs2844790-C	NR	4E-10		6.271	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
595	chr6_dbb_hap3	1387833	1387834	rs2844790	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p22.1	NR	rs2844790-?	NR	1E-8		0.1888	[0.12-0.25] unit increase	Illumina [at least 560000] (imputed)	N
595	chr6_dbb_hap3	1394696	1394697	rs61211515	29404672	Roshandel D	2018-02-05	Diabetologia	Meta-genome-wide association studies identify a locus on chromosome 1 and multiple variants in the MHC region for serum C-peptide in type 1 diabetes.	Stimulated C-peptide levels in type I diabetes	1,303 European ancestry individuals	NA	6p22.1	MHC	rs61211515-?	0.16	1E-7		0.39	[0.25-0.53] unit decrease	Illumina [8978838] (imputed)	N
595	chr6_dbb_hap3	1394696	1394697	rs61211515	29404672	Roshandel D	2018-02-05	Diabetologia	Meta-genome-wide association studies identify a locus on chromosome 1 and multiple variants in the MHC region for serum C-peptide in type 1 diabetes.	C-peptide levels in type I diabetes	3,479 European ancestry individuals	NA	6p22.1	MHC	rs61211515-?	0.16	2E-6				Illumina [7988630] (imputed)	N
595	chr6_dbb_hap3	1395285	1395286	rs115333019	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	6p22.1	SNORA48, TRIM40	rs115333019-G	0.00916799999999995	8E-43		0.1634603	[0.14-0.19] unit decrease	Affymetrix [93095623] (imputed)	N
595	chr6_dbb_hap3	1395376	1395377	rs1362104	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	SNORA48	rs1362104-A	NR	2E-10		6.398	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
595	chr6_dbb_hap3	1398879	1398880	rs28780086	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	6p22.1	TRIM40	rs28780086-G	0.023328	1E-25		0.078185886	[0.064-0.093] unit increase	Affymetrix [93095623] (imputed)	N
595	chr6_dbb_hap3	1398879	1398880	rs28780086	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	6p22.1	TRIM40	rs28780086-G	0.023332	8E-30		0.093978085	[0.078-0.11] unit decrease	Affymetrix [93095623] (imputed)	N
595	chr6_dbb_hap3	1402408	1402409	rs9261484	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	6p22.1	TRIM40	rs9261484-T	0.2451	2E-8		0.0635	[0.042-0.085] unit decrease	NR [7784415] (imputed)	N
595	chr6_dbb_hap3	1404583	1404583	rs146464922	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	6p22.1	TRIM40	rs146464922-CTT	0.014425	8E-11		0.05988576	[0.042-0.078] unit increase	Affymetrix [93095623] (imputed)	N
595	chr6_dbb_hap3	1404795	1404796	rs117432766	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6p22.1	TRIM40	rs117432766-A	0.016714	1E-25		0.09170394	[0.075-0.109] unit increase	Affymetrix [93095623] (imputed)	N
595	chr6_dbb_hap3	1407274	1407275	rs12202131	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6p22.1	TRIM40	rs12202131-A	0.052983	2E-12		0.06297606	[0.045-0.081] unit increase	Affymetrix [93095623] (imputed)	N
595	chr6_dbb_hap3	1407679	1407680	rs3815082	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p22.1	NR	rs3815082-G	0.295	9E-12	(IFNAR2_of_CD20p)			Illumina [5084123] (imputed)	N
595	chr6_dbb_hap3	1408031	1408032	rs2256146	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p22.1	NR	rs2256146-C	0.02787	7E-9	(SBDS)	0.03953	NR unit increase	Illumina [1671387] (imputed)	N
595	chr6_dbb_hap3	1409044	1409045	rs115651142	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p22.1	NR	rs115651142-?	NR	6E-7		0.324	[0.19-0.45] unit decrease	Illumina [at least 560000] (imputed)	N
595	chr6_dbb_hap3	1413614	1413615	rs9468692	20041166	Fellay J	2009-12-24	PLoS Genet	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	6p22.1	TRIM10	rs9468692-?	NR	1E-6	(setpoint)			Illumina [NR]	N
595	chr6_dbb_hap3	1414361	1414362	rs9468693	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	6p22.1	TRIM10	rs9468693-C	0.071694	2E-29		0.0510031	[0.043-0.059] unit decrease	Affymetrix [93095623] (imputed)	N
595	chr6_dbb_hap3	1415184	1415185	rs2022065	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	6p22.1	TRIM10	rs2022065-T	0.296544	2E-49		0.041531093	[0.036-0.047] unit decrease	Affymetrix [93095623] (imputed)	N
595	chr6_dbb_hap3	1415184	1415185	rs2022065	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6p22.1	TRIM10	rs2022065-T	0.296544	4E-41		0.041549113	[0.035-0.048] unit decrease	Affymetrix [93095623] (imputed)	N
595	chr6_dbb_hap3	1415184	1415185	rs2022065	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	6p22.1	TRIM10	rs2022065-T	0.296537	4E-62		0.05393633	[0.048-0.06] unit decrease	Affymetrix [93095623] (imputed)	N
595	chr6_dbb_hap3	1415184	1415185	rs2022065	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	6p22.1	TRIM10	rs2022065-T	0.2963	3E-25		0.04064069	[0.033-0.048] unit decrease	Affymetrix [~ 2500000] (imputed)	N
595	chr6_dbb_hap3	1415184	1415185	rs2022065	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	6p22.1	TRIM10	rs2022065-T	0.2963	1E-23		0.03931364	[0.032-0.047] unit decrease	Affymetrix [~ 2500000] (imputed)	N
595	chr6_dbb_hap3	1415184	1415185	rs2022065	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	6p22.1	TRIM10	rs2022065-T	0.2963	3E-30		0.04433495	[0.037-0.052] unit decrease	Affymetrix [~ 2500000] (imputed)	N
595	chr6_dbb_hap3	1415184	1415185	rs2022065	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	6p22.1	TRIM10	rs2022065-T	0.2962	2E-35		0.04860256	[0.041-0.056] unit decrease	Affymetrix [~ 2500000] (imputed)	N
595	chr6_dbb_hap3	1415184	1415185	rs2022065	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	6p22.1	TRIM10	rs2022065-T	0.2962	1E-34		0.04804721	[0.04-0.056] unit decrease	Affymetrix [~ 2500000] (imputed)	N
595	chr6_dbb_hap3	1416117	1416118	rs116596081	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	6p22.1	TRIM10	rs116596081-A	0.011844	3E-46		0.14981039	[0.13-0.17] unit decrease	Affymetrix [93095623] (imputed)	N
595	chr6_dbb_hap3	1416117	1416118	rs116596081	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6p22.1	TRIM10	rs116596081-A	0.0118470000000001	6E-38		0.13759963	[0.12-0.16] unit decrease	Affymetrix [93095623] (imputed)	N
595	chr6_dbb_hap3	1418535	1418536	rs144731721	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Red cell distribution width	441,263 European ancestry individuals	NA	6p22.1		rs144731721-?	NR	1E-14		0.080611	[0.059-0.102] unit increase	NR [9800000] (imputed)	N
595	chr6_dbb_hap3	1418535	1418536	rs144731721	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean reticulocyte volume	436,944 European ancestry individuals	NA	6p22.1		rs144731721-?	NR	1E-42		0.142474	[0.12-0.16] unit increase	NR [9800000] (imputed)	N
595	chr6_dbb_hap3	1418535	1418536	rs144731721	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	6p22.1	TRIM10	rs144731721-T	0.00866500000000004	5E-16		0.096417926	[0.073-0.12] unit increase	Affymetrix [93095623] (imputed)	N
595	chr6_dbb_hap3	1418535	1418536	rs144731721	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	6p22.1	TRIM10	rs144731721-T	0.00867700000000005	2E-39		0.15744652	[0.13-0.18] unit increase	Affymetrix [93095623] (imputed)	N
595	chr6_dbb_hap3	1418535	1418536	rs144731721	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	6p22.1	TRIM10	rs144731721-T	0.00866699999999998	6E-12		0.083550446	[0.06-0.107] unit increase	Affymetrix [93095623] (imputed)	N
595	chr6_dbb_hap3	1418535	1418536	rs144731721	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	6p22.1	TRIM10	rs144731721-T	0.0068	4E-11		0.1617919	[0.11-0.21] unit increase	Affymetrix [~ 2500000] (imputed)	N
595	chr6_dbb_hap3	1420345	1420346	rs116113631	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	6p22.1	TRIM10	rs116113631-T	0.010294	3E-68		0.19197759	[0.17-0.21] unit decrease	Affymetrix [93095623] (imputed)	N
595	chr6_dbb_hap3	1420345	1420346	rs116113631	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6p22.1	TRIM10	rs116113631-T	0.010297	3E-66		0.19043158	[0.17-0.21] unit decrease	Affymetrix [93095623] (imputed)	N
595	chr6_dbb_hap3	1421282	1421282	rs148280884	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	6p22.1	TRIM10	rs148280884-CAT	0.0122	4E-25		0.1718773	[0.14-0.2] unit decrease	Affymetrix [~ 2500000] (imputed)	N
595	chr6_dbb_hap3	1421282	1421282	rs148280884	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	6p22.1	TRIM10	rs148280884-CAT	0.0122	2E-27		0.1797411	[0.15-0.21] unit decrease	Affymetrix [~ 2500000] (imputed)	N
595	chr6_dbb_hap3	1421282	1421282	rs148280884	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	6p22.1	TRIM10	rs148280884-CAT	0.0122	2E-23		0.1655507	[0.13-0.2] unit decrease	Affymetrix [~ 2500000] (imputed)	N
595	chr6_dbb_hap3	1421282	1421282	rs148280884	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	6p22.1	TRIM10	rs148280884-CAT	0.0122	6E-25		0.1707215	[0.14-0.2] unit decrease	Affymetrix [~ 2500000] (imputed)	N
595	chr6_dbb_hap3	1421528	1421529	rs1573296	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	6p22.1	TRIM10	rs1573296-G	0.1349	2E-11		0.03526502	[0.025-0.046] unit decrease	Affymetrix [~ 2500000] (imputed)	N
595	chr6_dbb_hap3	1421528	1421529	rs1573296	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	6p22.1	TRIM10	rs1573296-G	0.1349	1E-14		0.04046172	[0.03-0.051] unit decrease	Affymetrix [~ 2500000] (imputed)	N
595	chr6_dbb_hap3	1421596	1421597	rs1318638	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	6p22.1	TRIM10	rs1318638-T	0.0648	3E-9		0.04268956	[0.029-0.057] unit increase	Affymetrix [~ 2500000] (imputed)	N
595	chr6_dbb_hap3	1421596	1421597	rs1318638	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin concentration	172,851 European ancestry individuals	NA	6p22.1	TRIM10	rs1318638-T	0.0649	1E-20		0.06542649	[0.052-0.079] unit decrease	Affymetrix [~ 2500000] (imputed)	N
595	chr6_dbb_hap3	1421826	1421827	rs142460927	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	6p22.1	TRIM10	rs142460927-C	0.00303299999999995	5E-25		0.21333578	[0.17-0.25] unit decrease	Affymetrix [93095623] (imputed)	N
595	chr6_dbb_hap3	1422165	1422166	rs12212092	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	6p22.1	TRIM10	rs12212092-T	0.0644400000000001	6E-20		0.043098915	[0.034-0.052] unit decrease	Affymetrix [93095623] (imputed)	N
595	chr6_dbb_hap3	1422165	1422166	rs12212092	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	6p22.1	TRIM10	rs12212092-T	0.06443	7E-84		0.096261576	[0.087-0.106] unit decrease	Affymetrix [93095623] (imputed)	N
595	chr6_dbb_hap3	1422165	1422166	rs12212092	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	6p22.1	TRIM10	rs12212092-T	0.064469	1E-29		0.051481474	[0.043-0.06] unit decrease	Affymetrix [93095623] (imputed)	N
595	chr6_dbb_hap3	1422165	1422166	rs12212092	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6p22.1	TRIM10	rs12212092-T	0.064468	1E-30		0.09085926	[0.075-0.106] unit decrease	Affymetrix [93095623] (imputed)	N
595	chr6_dbb_hap3	1422165	1422166	rs12212092	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	6p22.1	TRIM10	rs12212092-T	0.0648	1E-24		0.07379727	[0.06-0.088] unit decrease	Affymetrix [~ 2500000] (imputed)	N
595	chr6_dbb_hap3	1422165	1422166	rs12212092	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	6p22.1	TRIM10	rs12212092-T	0.0648	8E-24		0.07307307	[0.059-0.087] unit decrease	Affymetrix [~ 2500000] (imputed)	N
595	chr6_dbb_hap3	1422165	1422166	rs12212092	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	6p22.1	TRIM10	rs12212092-T	0.0648	3E-24		0.07368067	[0.059-0.088] unit decrease	Affymetrix [~ 2500000] (imputed)	N
595	chr6_dbb_hap3	1424831	1424832	rs17188113	29562276	Venkateswaran S	2018-03-01	Inflamm Bowel Dis	Enhanced Contribution of HLA in Pediatric Onset Ulcerative Colitis.	Childhood onset ulcerative colitis	466 European ancestry cases, 2,099 European ancestry controls	NA	6p22.1	HLA	rs17188113-?		9E-7		1.8086454	[1.57-2.05]	Affymetrix [3996700] (imputed)	N
595	chr6_dbb_hap3	1425419	1425420	rs17194474	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	6p22.1	TRIM15	rs17194474-C	0.028724	4E-18		0.055055395	[0.043-0.067] unit decrease	Affymetrix [93095623] (imputed)	N
595	chr6_dbb_hap3	1429685	1429686	rs9368624	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p22.1	TRIM15, TRIM10, TRIM40, TRIM31-AS1, TRIM31, TRIM26, PAIP1P1	rs9368624-A	0.1996982	3E-11	(EA, MHC class I polypeptide-related sequence A)	0.3704	[0.26-0.48] unit decrease	Affymetrix [509946]	N
595	chr6_dbb_hap3	1431357	1431358	rs1018846	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	6p22.1	TRIM15	rs1018846-A	0.064503	4E-25		0.046360865	[0.038-0.055] unit increase	Affymetrix [93095623] (imputed)	N
595	chr6_dbb_hap3	1431574	1431575	rs2107195	30037793	Haapasalo K	2018-09-21	Infect Immun	The Psoriasis Risk Allele <i>HLA-C*06:02</i> Shows Evidence of Association with Chronic or Recurrent Streptococcal Tonsillitis.	Tonsillitis	95 Finnish cases, 504 Finnish controls	NA	6p22.1	TRIM10, TRIM15	rs2107195-?		5E-6		3.7		Illumina [100000]	N
595	chr6_dbb_hap3	1431870	1431871	rs1029239	34642315	Ferreiro-Iglesias A	2021-10-12	Nat Commun	Germline determinants of humoral immune response to HPV-16 protect against oropharyngeal cancer.	Human papilloma virus 16 positive oropharyngeal cancer	1,078 European ancestry cases, 5,256 European ancestry controls	NA	6p22.1		rs1029239-G	NR	3E-6		1.2904		Illumina [7574753] (imputed)	N
595	chr6_dbb_hap3	1432353	1432354	rs1029238	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	6p22.1	TRIM15	rs1029238-A	0.089377	4E-11		0.025450304	[0.018-0.033] unit increase	Affymetrix [93095623] (imputed)	N
595	chr6_dbb_hap3	1433407	1433408	rs929156	33909500	Moll M	2021-04-28	Am J Physiol Lung Cell Mol Physiol	A Systematic Analysis of Protein-altering Exonic Variants in Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease	up to 31,465 European ancestry cases, up to 203,688 European ancestry controls, up to 1,413 African ancestry cases, up to 6,080 African ancestry controls, up to 287 East Asian ancestry cases, up to 7,484 East Asian ancestry controls, up to 61 Hispanic cases, up to 613 Hispanic controls	NA	6p22.1	TRIM15	rs929156-G	0.76	8E-8		1.06	[1.04 -1.09]	Illumina [at least 109036]	N
596	chr6_dbb_hap3	1447042	1447043	rs2106072	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p22.1	NR	rs2106072-A	0.13	3E-10		1.11	[1.08-1.15]	Affymetrix [9886854] (imputed)	N
596	chr6_dbb_hap3	1447042	1447043	rs2106072	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p22.1	NR	rs2106072-A	0.13	9E-13			[NR]	Affymetrix [9886854] (imputed)	N
596	chr6_dbb_hap3	1447042	1447043	rs2106072	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in non-current smokers	16,488 European ancestry cases, 169,688 European ancestry controls	NA	6p22.1	NR	rs2106072-A	0.13	3E-10		1.12	[1.08-1.15]	Affymetrix [9886854] (imputed)	N
596	chr6_dbb_hap3	1448828	1448829	rs2517622	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Proheparin-binding EGF-like growth factor levels	21,758 European ancestry individuals	9,173 individuals	6p22.1		rs2517622-C	0.11	1E-9		0.0845	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
596	chr6_dbb_hap3	1448828	1448829	rs2517622	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Help-seeking from a psychiatrist	36,286 British ancestry cases, 297,126 British ancestry controls	NA	6p22.1	NR	rs2517622-G	0.863	4E-11		1.0799136	NR	NR [5276842] (imputed)	N
596	chr6_dbb_hap3	1448828	1448829	rs2517622	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Help-seeking from a GP (without major depressive disorder symptoms)	8,632 British ancestry cases, 49,493 British ancestry controls	NA	6p22.1	NR	rs2517622-?	NR	3E-6		1.1223345	[1.07-1.18]	NR [5276842] (imputed)	N
596	chr6_dbb_hap3	1458962	1458963	rs2523722	22883433	Irish Schizophrenia Genomics Consortium and the Wellcome Trust Case Control Consortium 2	2012-08-07	Biol Psychiatry	Genome-wide association study implicates HLA-C*01:02 as a risk factor at the major histocompatibility complex locus in schizophrenia.	Schizophrenia	1,606 European ancestry cases, 1,794 European ancestry controls	13,195 European ancestry cases, 31,021 European ancestry controls	6p22.1	MHC, TRIM26	rs2523722-G	0.737	1E-16		1.25	[1.12-1.39]	Affymetrix [6212339]	N
596	chr6_dbb_hap3	1460575	1460576	rs2523720	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p22.1		rs2523720-C	0.836	9E-50				Affymetrix [10369434] (imputed)	N
596	chr6_dbb_hap3	1461524	1461525	rs2428503	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	TRIM26	rs2428503-T	NR	2E-9		0.0221273	[0.015-0.029] unit decrease	Affymetrix [127266] (imputed)	N
596	chr6_dbb_hap3	1462008	1462009	rs2523719	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	6p22.1	TRIM26	rs2523719-G	0.830078	2E-21		0.0245541	[0.019-0.03] unit increase	Affymetrix [NR] (imputed)	N
596	chr6_dbb_hap3	1463016	1463017	rs2517611	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (anti-inflammatory and antirheumatic products, non-steroids)	74,150 European ancestry cases, 90,370 European ancestry controls, 29,694 East Asian ancestry cases, 149,032 East Asian ancestry controls	NA	6p22.1		rs2517611-G	NR	2E-9		0.0422	[0.028-0.056] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
596	chr6_dbb_hap3	1463016	1463017	rs2517611	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Asthma	38,369 European ancestry cases, 411,131 European ancestry controls, 13,015 East Asian ancestry cases, 162,933 East Asian ancestry controls	NA	6p22.1		rs2517611-G	NR	3E-11		0.0613	[0.043-0.079] unit increase	Affymetrix, Illumina [25837673] (imputed)	N
596	chr6_dbb_hap3	1463016	1463017	rs2517611	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (anti-inflammatory and antirheumatic products, non-steroids)	74,150 European ancestry cases, 90,370 European ancestry controls	NA	6p22.1	TRIM26	rs2517611-G	0.229963	7E-10		0.050484303	[0.034-0.067] unit decrease	Affymetrix [7288503] (imputed)	N
596	chr6_dbb_hap3	1464199	1464200	rs1117490	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (childhood onset)	9,433 British ancestry cases, 318,237 British ancestry controls	NA	6p22.1	TRIM26, TRIM15, TRIM39	rs1117490-C	0.234	3E-8		1.1	[1.063-1.137]	Affymetrix [10894596] (imputed)	N
596	chr6_dbb_hap3	1464199	1464200	rs1117490	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (adult onset)	21,564 British ancestry cases, 318,237 British ancestry controls	NA	6p22.1	TRIM26, TRIM15, TRIM39	rs1117490-C	0.234	7E-7		1.059	[1.036-1.084]	Affymetrix [10894596] (imputed)	N
596	chr6_dbb_hap3	1473105	1473106	rs2844775	24489884	Mick E	2014-01-01	PLoS One	Genome-wide association study of proneness to anger.	Anger	8,747 European ancestry individuals	NA	6p22.1	TRIM31, TRIM10, PPP1R11, TRIM40, TRIM15, HLA-A29.1, TRIM26, HCG9, ZNRD1, RNF39	rs2844775-A	0.25	8E-7	(Temperament)	0.15	[NR] unit decrease	Affymetrix [677643]	N
596	chr6_dbb_hap3	1475566	1475567	rs2188100	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p22.1	NR	rs2188100-A	0.16	5E-11		1.15	[1.1-1.2]	Affymetrix [9886854] (imputed)	N
596	chr6_dbb_hap3	1475566	1475567	rs2188100	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p22.1	NR	rs2188100-A	0.16	5E-14			[NR]	Affymetrix [9886854] (imputed)	N
596	chr6_dbb_hap3	1475566	1475567	rs2188100	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in never smokers	8,631 European ancestry cases, 120,544 European ancestry controls	NA	6p22.1	NR	rs2188100-A	0.16	2E-11		1.15	[1.11-1.2]	Affymetrix [9886854] (imputed)	N
596	chr6_dbb_hap3	1476078	1476079	rs1345229	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	6p22.1	TRIM26	rs1345229-A	0.085649	1E-9		0.023856346	[0.016-0.032] unit increase	Affymetrix [93095623] (imputed)	N
596	chr6_dbb_hap3	1480364	1480365	rs9380159	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p22.1	NR	rs9380159-?	NR	8E-13		0.1064	[0.077-0.136] unit decrease	Illumina [at least 560000] (imputed)	N
596	chr6_dbb_hap3	1483720	1483721	rs2517602	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	TRIM26	rs2517602-T	NR	1E-9		6.068	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
596	chr6_dbb_hap3	1484811	1484811	rs72031595	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	6p22.1		rs72031595-CT	0.551943	5E-9		0.014966801	[0.01-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
596	chr6_dbb_hap3	1494116	1494117	rs5875247	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	6p22.1	HCG17	rs5875247-C	0.465286	6E-14		0.017951211	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
596	chr6_dbb_hap3	1494550	1494551	rs3094137	29784950	Sawai H	2018-05-21	Sci Rep	Genome-wide association study identified new susceptible genetic variants in HLA class I region for hepatitis B virus-related hepatocellular carcinoma.	Hepatocellular carcinoma in hepatitis B infection	473 Japanese ancestry chronic hepatitis and hepatocellular carcinoma cases, 516 Japanese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma	153 Japanese ancestry chronic hepatitis and hepatocellular carcinoma cases, 614 Japanese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma, 94 Chinese ancestry chronic hepatitis and hepatocellular carcinoma cases, 187 Chinese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma, 185 Thai ancestry chronic hepatitis and hepatocellular carcinoma cases, 198 Thai ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma	6p22.1	HLA	rs3094137-?	NR	4E-7	(Japanese)	1.76	[1.41-2.19]	Affymetrix [447830]	N
596	chr6_dbb_hap3	1496248	1496249	rs885916	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	HCG17	rs885916-T	NR	1E-11		6.793	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
596	chr6_dbb_hap3	1501606	1501607	rs3129693	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p22.1	HCG17, TRIM26BP	rs3129693-T	NR	2E-9		0.0239683	[0.016-0.032] unit increase	Affymetrix [323123] (imputed)	N
596	chr6_dbb_hap3	1509052	1509053	rs9391803	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	6p22.1	TRIM26	rs9391803-T	0.852467	2E-19		0.0266262	[0.021-0.032] unit decrease	Affymetrix [NR] (imputed)	N
596	chr6_dbb_hap3	1511026	1511027	rs9261608	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6p22.1		rs9261608-T	0.858197	3E-8		0.0330532	[0.021-0.045] unit increase	NR [11722792] (imputed)	N
596	chr6_dbb_hap3	1517103	1517104	rs2189373	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	HCG17	rs2189373-T	NR	8E-10		0.0232455	[0.016-0.031] unit decrease	Affymetrix [323858] (imputed)	N
596	chr6_dbb_hap3	1517103	1517104	rs2189373	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	HCG17	rs2189373-T	NR	5E-9		5.835	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
596	chr6_dbb_hap3	1517188	1517189	rs2187980	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	6p22.1		rs2187980-A	0.855994	2E-8		0.0328244	[0.021-0.044] unit increase	NR [11722792] (imputed)	N
596	chr6_dbb_hap3	1518646	1518647	rs3094078	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	6p22.1	HCG17	rs3094078-?	NR	2E-15		0.0305	[0.024-0.037] unit decrease	Affymetrix [5701386] (imputed)	N
596	chr6_dbb_hap3	1518646	1518647	rs3094078	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA	6p22.1	NR	rs3094078-?	NR	8E-6		0.0526	[0.029-0.076] unit increase	Illumina [at least 560000] (imputed)	N
596	chr6_dbb_hap3	1520819	1520820	rs185780876	32185793	Yan J	2020-03-17	Clin Genet	A genome-wide association study identifies FSHR rs2300441 associated with follicle-stimulating hormone levels.	Luteinizing hormone levels in healthy women	720 Han Chinese ancestry individuals	NA	6p22.1	NR	rs185780876-?	NR	4E-7				Affymetrix [3101376] (imputed)	N
596	chr6_dbb_hap3	1522982	1522983	rs2428507	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	HLA-L, HCG17	rs2428507-A	NR	4E-9		5.893	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
596	chr6_dbb_hap3	1523598	1523599	rs2516703	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p22.1	HCG17	rs2516703-G	NR	1E-6		0.0184109	[0.011-0.026] unit decrease	Illumina [13520550] (imputed)	N
596	chr6_dbb_hap3	1523598	1523599	rs2516703	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	6p22.1	HCG17	rs2516703-G	NR	1E-10		0.0283809	[0.02-0.037] unit decrease	Illumina [13520550] (imputed)	N
596	chr6_dbb_hap3	1524198	1524198	rs201471471	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	6p22.1	NR	rs201471471-?	NR	3E-7		0.0808	[0.05-0.112] unit increase	Illumina [at least 560000] (imputed)	N
596	chr6_dbb_hap3	1526190	1526191	rs2516697	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	HCG17, HLA-L	rs2516697-A	NR	1E-8		0.0194794	[0.013-0.026] unit decrease	Affymetrix [321016] (imputed)	N
596	chr6_dbb_hap3	1535203	1535204	rs28894080	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p22.1	NR	rs28894080-?	NR	1E-8		0.1082	[0.071-0.145] unit increase	Illumina [at least 560000] (imputed)	N
596	chr6_dbb_hap3	1541362	1541365	rs141219707	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	6p22.1	HCG17, HLA-L	rs141219707-G	0.064428	9E-12		0.0670612	[0.059-0.075] unit increase	Affymetrix [93095623] (imputed)	N
596	chr6_dbb_hap3	1541363	1541365	rs368679067	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hashimoto thyroiditis	537 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	6p22.1		rs368679067-G	0.221880434	3E-13		0.64336747	[0.47-0.82] unit increase	Illumina [13428945] (imputed)	N
596	chr6_dbb_hap3	1550604	1550605	rs1264622	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	HCG17, HLA-L, HCG18	rs1264622-T	NR	2E-12		0.0273215	[0.02-0.035] unit decrease	Affymetrix [323858] (imputed)	N
596	chr6_dbb_hap3	1550604	1550605	rs1264622	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	HCG17, HLA-L, HCG18	rs1264622-T	NR	2E-11		0.0260716	[0.018-0.034] unit decrease	Affymetrix [127266] (imputed)	N
596	chr6_dbb_hap3	1550604	1550605	rs1264622	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6p22.1	HCG18	rs1264622-T	0.200945	1E-26		0.045548007	[0.037-0.054] unit decrease	Affymetrix [93095623] (imputed)	N
596	chr6_dbb_hap3	1550604	1550605	rs1264622	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p22.1	HLA-L, HCG17, HCG18	rs1264622-T	0.1901	2E-7		0.0455	[0.028-0.063] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
596	chr6_dbb_hap3	1550604	1550605	rs1264622	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	6p22.1	HCG18	rs1264622-T	0.2019	4E-13		0.03202955	[0.023-0.041] unit decrease	Affymetrix [~ 2500000] (imputed)	N
596	chr6_dbb_hap3	1567416	1567416	rs11380688	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p22.1	HCG17, HCG18	rs11380688-CT	0.2755	1E-9		0.0469	[0.032-0.062] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
596	chr6_dbb_hap3	1570033	1570034	rs139419536	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	6p22.1	HCG18	rs139419536-G	0.5266	1E-22		0.0193	[0.015-0.023] unit decrease	Affymetrix [18391927] (imputed)	N
596	chr6_dbb_hap3	1570330	1570331	rs577217250	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	6p22.1	HCG18, HCG17	rs577217250-C	0.6248	8E-56		0.06073397	[0.053-0.068] unit decrease	Affymetrix [~ 2500000] (imputed)	N
596	chr6_dbb_hap3	1570330	1570331	rs577217250	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	6p22.1	HCG18, HCG17	rs577217250-C	0.6248	5E-58		0.0619973	[0.054-0.07] unit decrease	Affymetrix [~ 2500000] (imputed)	N
596	chr6_dbb_hap3	1572722	1572723	rs1264587	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p22.1	HCG17, HCG18	rs1264587-G	NR	7E-10		0.0215064	[0.015-0.028] unit decrease	Affymetrix [319769] (imputed)	N
596	chr6_dbb_hap3	1572722	1572723	rs1264587	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p22.1	HCG17, HCG18	rs1264587-G	NR	5E-9		0.0203583	[0.014-0.027] unit decrease	Affymetrix [319769] (imputed)	N
596	chr6_dbb_hap3	1572722	1572723	rs1264587	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p22.1	HCG17, HCG18	rs1264587-G	NR	4E-8		0.0194219	[0.013-0.026] unit decrease	Affymetrix [321169] (imputed)	N
597	chr6_dbb_hap3	1574735	1574736	rs6926097	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mumps	31,227 European ancestry cases, 54,153 European ancestry controls	NA	6p22.1	NR	rs6926097-?	NR	2E-13		0.5671	[0.41-0.72] unit decrease	Illumina [at least 560000] (imputed)	N
597	chr6_dbb_hap3	1578769	1578770	rs9357097	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8 on CD39+ CD8+ T cell	2,915 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p22.1		rs9357097-T	0.47616	8E-12		0.1925	[0.14-0.25] unit increase	Illumina [17951463] (imputed)	N
597	chr6_dbb_hap3	1579298	1579299	rs1264585	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p22.1	NR	rs1264585-A	0.233	1E-13	(conditional)	1.206	[1.16-1.25]	Illumina [11270530] (imputed)	N
597	chr6_dbb_hap3	1581928	1581929	rs9261655	33563987	Tyrrell J	2021-02-09	Nat Commun	Genetic predictors of participation in optional components of UK Biobank.	Percentage of invited food questionnaires completed	300,639 European ancestry individuals	NA	6p22.1	NR	rs9261655-G	0.89	4E-9		0.86	[0.57-1.15] unit increase	Affymetrix [39302896] (imputed)	N
597	chr6_dbb_hap3	1584307	1584308	rs1264584	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	334,944 European ancestry, NR ancestry individuals	NA	6p22.1		rs1264584-?	NR	5E-8				Affymetrix [NR] (imputed)	N
597	chr6_dbb_hap3	1589718	1589719	rs1110464	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	6p22.1	TRIM39-RPP21	rs1110464-T	0.5706	3E-9		0.015407745	[0.01-0.021] unit decrease	Affymetrix [~ 11515000] (imputed)	N
597	chr6_dbb_hap3	1592895	1592896	rs3094067	25827949	Kunz M	2015-05-04	Exp Dermatol	Genome-wide association study identifies new susceptibility loci for cutaneous lupus erythematosus.	Cutaneous lupus erythematosus	151 European ancestry cases, 1,288 European ancestry controls	219 European ancestry cases, 262 European ancestry controls	6p22.1	TRIM39, RPP21	rs3094067-G	0.096	2E-11		2.32	[1.68-3.20]	Affymetrix [906600]	N
597	chr6_dbb_hap3	1596253	1596254	rs3778624	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	6p22.1	NR	rs3778624-?		7E-7	(MICA)			Illumina [NR]	N
597	chr6_dbb_hap3	1599606	1599607	rs9261659	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p22.1	NR	rs9261659-G	0.12	1E-10	(IFNAR2_of_CD20p)			Illumina [5084123] (imputed)	N
597	chr6_dbb_hap3	1599606	1599607	rs9261659	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p22.1	NR	rs9261659-?	NR	3E-13		0.1554	[0.11-0.2] unit decrease	Illumina [at least 560000] (imputed)	N
597	chr6_dbb_hap3	1606682	1606683	rs45626136	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p22.1	RPP21	rs45626136-C	0.939	1E-6		0.111	[0.066-0.156] unit increase	Affymetrix, Illumina [7374092] (imputed)	N
597	chr6_dbb_hap3	1606993	1606994	rs6986	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Anxiety	at least 23,606 European ancestry cases, at least 113,351 European ancestry controls	624,615 European ancestry cases, 1,310,854 European ancestry controls	6p22.1	TRIM39, RPP21	rs6986-G	0.2545	1E-12		0.018671134	[0.013-0.025] unit decrease	NR [9417325] (imputed)	N
597	chr6_dbb_hap3	1606993	1606994	rs6986	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	6p22.1	RPP21	rs6986-C	0.223335	7E-10		6.16	z score increase	NR [10847151] (imputed)	N
597	chr6_dbb_hap3	1606993	1606994	rs6986	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling guilty	373,380 European ancestry individuals	NA	6p22.1	TRIM39-RPP21	rs6986-C	0.223335	4E-13		7.25	z score increase	NR [10847151] (imputed)	N
597	chr6_dbb_hap3	1606993	1606994	rs6986	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	6p22.1	GNL1, HLA-E, PRR3, RPP21, TRIM10, TRIM15, TRIM26, TRIM31, TRIM39, TRIM39-RPP21, TRIM40	rs6986-C	0.22334	8E-9		5.76	z score increase	Illumina [18485882] (imputed)	N
597	chr6_dbb_hap3	1606993	1606994	rs6986	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	6p22.1	NR	rs6986-C	0.2277	5E-6	(Trans-16:1n-7, EA)	0.0079	[0.0046-0.0112] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
597	chr6_dbb_hap3	1614711	1614712	rs3132649	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	6p22.1	TRIM39-RPP21, HLA-E	rs3132649-G	NR	4E-7		0.152484	[0.093-0.211] unit increase	Illumina [at least 950000] (imputed)	N
597	chr6_dbb_hap3	1617631	1617631	rs9280949	31577861	Dai J	2019-10-31	Int J Cancer	Genome-wide association study of INDELs identified four novel susceptibility loci associated with lung cancer risk.	Lung cancer	20,871 European ancestry cases, 15,971 European ancestry controls, 2,331 Chinese ancestry cases, 3,077 Chinese ancestry controls	NA	6p22.1	RPP21	rs9280949-T	0.09	3E-10		1.16	[1.11-1.22]	Illumina [484196]	N
597	chr6_dbb_hap3	1619185	1619186	rs3130379	31272903	Sunadome H	2019-07-01	Allergol Int	Correlation between eosinophil count, its genetic background and body mass index: The Nagahama Study.	Eosinophil counts	4,650 East Asian ancestry individuals	NA	6p22.1	NR	rs3130379-T	0.11	2E-7		0.1677	NR unit increase	Illumina [103680] (imputed)	N
597	chr6_dbb_hap3	1619185	1619186	rs3130379	31272903	Sunadome H	2019-07-01	Allergol Int	Correlation between eosinophil count, its genetic background and body mass index: The Nagahama Study.	Eosinophil counts	4,206 East Asian ancestry individuals	NA	6p22.1	NR	rs3130379-T	0.11	4E-10		0.2134	NR unit increase	Illumina [103680] (imputed)	N
597	chr6_dbb_hap3	1620177	1620177	rs34500224	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	6p22.1	UBQLN1P1, HCG19P	rs34500224-CA	0.272902	2E-20		0.026657145	[0.021-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
597	chr6_dbb_hap3	1620182	1620182	rs202005918	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	95,717 East Asian ancestry individuals	NA	6p22.1		rs202005918-CA	0.233019	1E-8		0.0295853	[0.019-0.04] unit increase	Illumina [13471431] (imputed)	N
597	chr6_dbb_hap3	1621606	1621607	rs3094622	29899525	Klimentidis YC	2018-06-13	Int J Obes (Lond)	Genome-wide association study of habitual physical activity in over 377,000 UK Biobank participants identifies multiple variants including CADM2 and APOE.	Moderate to vigorous physical activity levels	377,234 European ancestry individuals	NA	6p22.1	RPP21	rs3094622-A	0.86	1E-9		0.02	unit increase	Affymetrix [11800000] (imputed)	N
597	chr6_dbb_hap3	1622847	1622848	rs116470386	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p22.1	NR	rs116470386-?	NR	5E-7		0.2768	[0.17-0.39] unit decrease	Illumina [at least 560000] (imputed)	N
597	chr6_dbb_hap3	1627157	1627158	rs3094054	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p22.1	NR	rs3094054-T	0.1132	1E-7	(EA)	0.056	[0.035-0.077] unit decrease	Illumina [~ 11800000] (imputed)	N
597	chr6_dbb_hap3	1629001	1629002	rs2057726	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	6p22.1		rs2057726-C	0.143	2E-91		0.31	[0.28-0.34] % increase	Affymetrix [NR] (imputed)	N
597	chr6_dbb_hap3	1633590	1633590	rs139568388	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	UBQLN1P1	rs139568388-CT	NR	2E-8		0.0220953	[0.014-0.03] unit decrease	Affymetrix [323858] (imputed)	N
597	chr6_dbb_hap3	1633590	1633590	rs139568388	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	UBQLN1P1	rs139568388-CT	NR	3E-8		0.0218212	[0.014-0.03] unit decrease	Affymetrix [127266] (imputed)	N
597	chr6_dbb_hap3	1636404	1636405	rs3129817	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p22.1	UBQLN1P1	rs3129817-A	NR	1E-9		0.0241213	[0.016-0.032] unit decrease	Affymetrix [319769] (imputed)	N
597	chr6_dbb_hap3	1636404	1636405	rs3129817	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p22.1	UBQLN1P1	rs3129817-A	NR	1E-8		0.0225242	[0.015-0.03] unit decrease	Affymetrix [319769] (imputed)	N
597	chr6_dbb_hap3	1636404	1636405	rs3129817	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p22.1	UBQLN1P1	rs3129817-A	NR	5E-8		0.0218736	[0.014-0.03] unit decrease	Affymetrix [321169] (imputed)	N
597	chr6_dbb_hap3	1636404	1636405	rs3129817	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Anxiety	at least 23,606 European ancestry cases, at least 113,351 European ancestry controls	624,615 European ancestry cases, 1,310,854 European ancestry controls	6p22.1	UBQLN1P1	rs3129817-G	0.1083	2E-48		0.052231386	[0.044-0.06] unit increase	NR [9417325] (imputed)	N
597	chr6_dbb_hap3	1636404	1636405	rs3129817	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	UBQLN1P1	rs3129817-A	NR	1E-8		5.695	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
597	chr6_dbb_hap3	1640961	1640962	rs970270	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Prostate cancer	10,792 European ancestry cases, 410,350 European ancestry controls	NA	6p22.1		rs970270-A	NR	3E-7		1.0985389	NR	Affymetrix [7846216] (imputed)	N
597	chr6_dbb_hap3	1641375	1641376	rs3132625	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Peripheral artery disease	7,114 European ancestry cases, 475,964 European ancestry controls, 4,112 East Asian ancestry cases, 173,601 East Asian ancestry controls	NA	6p22.1		rs3132625-G	NR	2E-8		0.165	[0.11-0.22] unit increase	Affymetrix, Illumina [25844651] (imputed)	N
597	chr6_dbb_hap3	1653354	1653355	rs2524204	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	6p22.1	intergenic	rs2524204-C	0.1322	6E-15		0.04113655	[0.031-0.051] unit decrease	Affymetrix [~ 2500000] (imputed)	N
597	chr6_dbb_hap3	1653354	1653355	rs2524204	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	6p22.1	intergenic	rs2524204-C	0.1322	7E-14		0.03948169	[0.029-0.05] unit decrease	Affymetrix [~ 2500000] (imputed)	N
597	chr6_dbb_hap3	1655015	1655016	rs9391683	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p22.1		rs9391683-G	0.689	2E-33				Affymetrix [10369434] (imputed)	N
597	chr6_dbb_hap3	1655080	1655081	rs2516686	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	6p22.1	intergenic	rs2516686-G	0.1322	1E-13		0.03934043	[0.029-0.05] unit decrease	Affymetrix [~ 2500000] (imputed)	N
597	chr6_dbb_hap3	1655080	1655081	rs2516686	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	6p22.1	intergenic	rs2516686-G	0.1322	6E-12		0.03638258	[0.026-0.047] unit decrease	Affymetrix [~ 2500000] (imputed)	N
597	chr6_dbb_hap3	1655464	1655465	rs9391684	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p22.1		rs9391684-G	0.688	7E-19				Affymetrix [10369434] (imputed)	N
597	chr6_dbb_hap3	1659105	1659106	rs3130116	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p22.1	NR	rs3130116-C	0.1391	6E-13		0.0124	[0.0091-0.0157] unit decrease	NR [7666894] (imputed)	N
597	chr6_dbb_hap3	1660668	1660669	rs1264565	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	6p22.1		rs1264565-T	0.618	8E-15		0.01	[0.008-0.012] unit increase	NR [NR] (imputed)	N
597	chr6_dbb_hap3	1667542	1667543	rs28780100	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p22.1	NR	rs28780100-?	NR	3E-9		0.1143	[0.077-0.152] unit increase	Illumina [at least 560000] (imputed)	N
597	chr6_dbb_hap3	1669541	1669542	rs34874107	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	6p22.1		rs34874107-C	0.182865	4E-10		0.019685585	[0.014-0.026] unit increase	Affymetrix [93095623] (imputed)	N
597	chr6_dbb_hap3	1674023	1674024	rs78860372	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lung cancer	4,444 East Asian ancestry cases, 174,282 East Asian ancestry controls	NA	6p22.1		rs78860372-T	0.236112602	5E-9		0.14972878	[0.099-0.2] unit increase	Illumina [13429980] (imputed)	N
597	chr6_dbb_hap3	1675825	1675826	rs1264544	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	334,944 European ancestry, NR ancestry individuals	NA	6p22.1		rs1264544-?	NR	5E-8				Affymetrix [NR] (imputed)	N
597	chr6_dbb_hap3	1675825	1675826	rs1264544	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	6p22.1		rs1264544-C	0.667	1E-12				Affymetrix [10369434] (imputed)	N
597	chr6_dbb_hap3	1679403	1679404	rs3094717	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p22.1	NR	rs3094717-?	NR	6E-7		0.0733	[0.044-0.102] unit decrease	Illumina [at least 560000] (imputed)	N
597	chr6_dbb_hap3	1680899	1680900	rs139215104	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mumps	31,227 European ancestry cases, 54,153 European ancestry controls	NA	6p22.1	NR	rs139215104-?	NR	6E-11		0.5908	[0.41-0.77] unit increase	Illumina [at least 560000] (imputed)	N
597	chr6_dbb_hap3	1683837	1683838	rs9261899	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	6p22.1	NR	rs9261899-?	NR	9E-33		11.926	NR z score increase	Illumina [at least 830937] (imputed)	N
597	chr6_dbb_hap3	1685248	1685249	rs76241157	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lung cancer	3,791 European ancestry cases, 489,012 European ancestry controls, 4,444 East Asian ancestry cases, 174,282 East Asian ancestry controls	NA	6p22.1		rs76241157-T	NR	1E-8		0.1454	[0.095-0.196] unit increase	Affymetrix, Illumina [25845450] (imputed)	N
597	chr6_dbb_hap3	1685632	1685633	rs3130127	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	MICC	rs3130127-A	NR	8E-10		6.154	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
597	chr6_dbb_hap3	1692047	1692048	rs114810763	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6p22.1		rs114810763-A	0.1549	2E-9		0.0121	[0.0082-0.016] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
597	chr6_dbb_hap3	1692047	1692048	rs114810763	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6p22.1	Intergenic	rs114810763-A	0.1549	6E-12	(MTAG)	0.0129	[0.0092-0.0166] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
597	chr6_dbb_hap3	1694420	1694421	rs149543464	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms (MTAG)	354,862 European ancestry individuals	NA	6p22.1	NR	rs149543464-G	0.8838	1E-10		0.0217	[0.015-0.028] unit increase	Illumina [NR] (imputed)	N
597	chr6_dbb_hap3	1694420	1694421	rs149543464	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms	354,862 European ancestry individuals	NA	6p22.1	NR	rs149543464-G	0.8838	8E-9		0.0213	[0.014-0.029] unit increase	Illumina [NR] (imputed)	N
597	chr6_dbb_hap3	1702444	1702445	rs1269556	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	6p22.1	NR	rs1269556-?	NR	2E-6		0.0083093	[0.0049-0.0117] unit decrease	Affymetrix [805426] (imputed)	N
597	chr6_dbb_hap3	1702906	1702907	rs3132645	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p22.1	RNF39, TRIM31, FLOT1, PPP1R18, HLA-J, ZNRD1-AS1_3, ZNRD1, TRIM26, HCG17, TRIM26BP, HLA-L, TRIM39-RPP21, RPP21, HCG19P, ATAT1, NRM, IER3, HCG20, LINC00243, ZNRD1-AS1, HCG4P3, PPP1R11, TRIM31-AS1, TRIM40, TRIM10, TRIM15, PAIP1P1, XXbac-BPG283O16.9, HCG18, TRIM39, HLA-N, UBQLN1P1, MICC, SUCLA2P1, GNL1, ABCF1, PPP1R10, PTMAP1, MRPS18B, C6orf136, AL662800.2, DHX16, AL662797.1, XXbac-BPG252P9.9, TUBB, MDC1, Y_RNA, XXbac-BPG252P9.10, RN7SL353P	rs3132645-C	0.09428285	4E-22	(EA, MHC class I polypeptide-related sequence B)	0.7147	[0.57-0.86] unit decrease	Affymetrix [509946]	N
598	chr6_dbb_hap3	1705560	1705561	rs1264516	33106546	Johnson TA	2020-10-26	J Hum Genet	Association of an IGHV3-66 gene variant with Kawasaki disease.	Kawasaki disease	1,276 East Asian ancestry cases, 5,086 East Asian ancestry controls	2,152 East Asian ancestry cases, 2,751 East Asian ancestry controls	6p22.1	LOC105375012	rs1264516-A	NR	4E-11		1.24	[1.16-1.32]	Affymetrix, Illumina [6265045] (imputed)	N
598	chr6_dbb_hap3	1725854	1725855	rs3130141	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p22.1	RPP21, HLA-E	rs3130141-A	0.283	4E-23				Illumina [118177]	N
598	chr6_dbb_hap3	1734886	1734887	rs2516667	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p22.1	NR	rs2516667-?	NR	5E-10		0.0889	[0.061-0.117] unit decrease	Illumina [at least 560000] (imputed)	N
598	chr6_dbb_hap3	1734985	1734986	rs3132615	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p22.1	NR	rs3132615-T	0.1154	2E-6	(EA)	0.0507	[0.03-0.071] unit decrease	Illumina [~ 11800000] (imputed)	N
598	chr6_dbb_hap3	1746606	1746607	rs9380180	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p22.1	RANP1	rs9380180-A	NR	6E-9		0.0171541	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
598	chr6_dbb_hap3	1746606	1746607	rs9380180	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p22.1	RANP1	rs9380180-A	NR	1E-8		0.0168134	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
598	chr6_dbb_hap3	1748933	1748934	rs12207974	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (age of onset)	37,846 British ancestry individuals	NA	6p22.1	NR	rs12207974-C	0.776	9E-11		1.066	[0.74-1.39] unit decrease	Affymetrix [10894596] (imputed)	N
598	chr6_dbb_hap3	1748960	1748961	rs17875360	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	6p22.1	NR	rs17875360-?	NR	1E-6		0.0925	[0.055-0.13] unit increase	Illumina [at least 560000] (imputed)	N
598	chr6_dbb_hap3	1749559	1749560	rs1264459	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	6p22.1	HLA-E	rs1264459-A	0.826302	3E-10		0.019164842	[0.013-0.025] unit increase	Affymetrix [93095623] (imputed)	N
598	chr6_dbb_hap3	1751703	1751704	rs1264457	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	6p22.1	HLA-E	rs1264457-A	0.60324	8E-24		0.02398372	[0.019-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
598	chr6_dbb_hap3	1751703	1751704	rs1264457	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p22.1	HLA-E	rs1264457-G		4E-11		0.015	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
598	chr6_dbb_hap3	1762431	1762432	rs3131115	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder	29,475 European ancestry cases, 63,482 European ancestry controls	NA	6p21.33	NR	rs3131115-C	0.671942	1E-7		1.0845987	[1.05-1.12]	Affymetrix [7791636] (imputed)	N
598	chr6_dbb_hap3	1762431	1762432	rs3131115	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	6p21.33	HLA-E, GNL1	rs3131115-T	NR	2E-6		0.0966506	[0.057-0.136] unit decrease	Illumina [at least 950000] (imputed)	N
598	chr6_dbb_hap3	1765157	1765158	rs2429657	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.33		rs2429657-G	0.21809299999999998	2E-8		1.0286343	[1.02-1.04]	Affymetrix, Illumina [9851866] (imputed)	N
598	chr6_dbb_hap3	1773550	1773551	rs140668832	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs140668832-?		2E-9		1.07	[1.05-1.09]	Illumina [7645193] (imputed)	N
598	chr6_dbb_hap3	1773550	1773551	rs140668832	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs140668832-?		3E-10		1.92	[1.57-2.35]	Illumina [7645193] (imputed)	N
598	chr6_dbb_hap3	1776109	1776110	rs28894081	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p21.33	NR	rs28894081-A	0.0655	1E-7		0.0126	[0.0079-0.0173] unit increase	NR [7666894] (imputed)	N
598	chr6_dbb_hap3	1777118	1777119	rs181383036	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p21.33	NR	rs181383036-?	NR	2E-12		0.3665	[0.27-0.47] unit increase	Illumina [at least 560000] (imputed)	N
598	chr6_dbb_hap3	1777667	1777668	rs10484552	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p21.33	NR	rs10484552-?	NR	8E-10		0.0986	[0.067-0.13] unit decrease	Illumina [at least 560000] (imputed)	N
598	chr6_dbb_hap3	1780938	1780939	rs143654430	30111768	Yao C	2018-08-15	Nat Commun	Genome-wide mapping of plasma protein QTLs identifies putatively causal genes and pathways for cardiovascular disease.	Blood protein levels	6861 European ancestry individuals	4298 European ancestry individuals	6p21.33		rs143654430-T	0.981	7E-18	(C2)	0.639	unit increase	Affymetrix, Illumina [8509364] (imputed)	N
598	chr6_dbb_hap3	1786667	1786668	rs139629463	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mumps	31,227 European ancestry cases, 54,153 European ancestry controls	NA	6p21.33	NR	rs139629463-?	NR	4E-6		0.3	[0.17-0.43] unit increase	Illumina [at least 560000] (imputed)	N
598	chr6_dbb_hap3	1788098	1788099	rs149608588	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p21.33	NR	rs149608588-?	NR	1E-6		0.2523	[0.15-0.36] unit decrease	Illumina [at least 560000] (imputed)	N
598	chr6_dbb_hap3	1789314	1789315	rs41265607	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.33		rs41265607-C	0.801	3E-28				Affymetrix [10369434] (imputed)	N
598	chr6_dbb_hap3	1789314	1789315	rs41265607	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs41265607-C	0.801	4E-34				Affymetrix [10369434] (imputed)	N
598	chr6_dbb_hap3	1789371	1789372	rs147537141	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	6p21.33		rs147537141-G	0.014219	2E-16		0.08431184	[0.064-0.104] unit increase	Affymetrix [93095623] (imputed)	N
598	chr6_dbb_hap3	1802586	1802587	rs3130117	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p21.33	NR	rs3130117-?	NR	2E-7		0.0742	[0.046-0.102] unit increase	Illumina [at least 560000] (imputed)	N
598	chr6_dbb_hap3	1804800	1804801	rs2524222	27479909	Hyde CL	2016-08-01	Nat Genet	Identification of 15 genetic loci associated with risk of major depression in individuals of European descent.	Major depressive disorder	84,847 European ancestry cases, 241,266 European ancestry controls	45,773 European ancestry cases, 106,354 European ancestry controls	6p21.33	GNL1	rs2524222-T	0.219809	1E-6		0.0335	[0.02-0.047] unit increase	Illumina [1220000] (imputed)	N
598	chr6_dbb_hap3	1822285	1822286	rs3130040	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	6p21.33	PRR3	rs3130040-T	NR	2E-8		0.0366187	[0.024-0.049] unit increase	Illumina [13520550] (imputed)	N
598	chr6_dbb_hap3	1831240	1831241	rs3132613	21900946	Nakabayashi K	2011-09-08	J Hum Genet	Identification of independent risk loci for Graves' disease within the MHC in the Japanese population.	Graves' disease	1,119 Japanese ancestry cases, 2,718 Japanese ancestry controls	432 Japanese ancestry cases, 1,157 Japanese ancestry controls	6p21.33	MHC	rs3132613-C	0.25	1E-13		1.43	[1.30-1.57]	Perlegen [268068]	N
598	chr6_dbb_hap3	1832839	1832840	rs4148247	26379185	Garcia-Etxebarria K	2015-09-17	PLoS One	No Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity.	Mild influenza (H1N1) infection	107 European ancestry mild cases, 549 European ancestry population controls	NA	6p21.33	GCN20, ABCF1	rs4148247-?	0.0167	1E-8		5.963	[5.27-6.66]	Affymetrix [547296]	N
598	chr6_dbb_hap3	1833586	1833587	rs2269710	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	IgM levels	14,442 Icelandic ancestry individuals	2,157 Swedish ancestry individuals	6p21.33	ABCF1	rs2269710-C	0.3579	3E-20		0.11	NR SD units increase	Illumina [21568490] (imputed)	N
599	chr6_dbb_hap3	1838039	1838040	rs3132610	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p21.33	NR	rs3132610-G	0.1198	1E-6	(EA)	0.0499	[0.03-0.07] unit decrease	Illumina [~ 11800000] (imputed)	N
599	chr6_dbb_hap3	1859490	1859491	rs9262120	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p21.33	ABCF1	rs9262120-A	NR	3E-8		5.562	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
599	chr6_dbb_hap3	1860043	1860044	rs3095276	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	6p21.33	NR	rs3095276-?	NR	5E-6		0.0784	[0.045-0.112] unit increase	Illumina [at least 560000] (imputed)	N
599	chr6_dbb_hap3	1865108	1865109	rs1264423	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.33		rs1264423-T	0.489	1E-18				Affymetrix [10369434] (imputed)	N
599	chr6_dbb_hap3	1865108	1865109	rs1264423	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	6p21.33	PPP1R10	rs1264423-C	0.5121	6E-16		0.02836222	[0.021-0.035] unit decrease	Affymetrix [~ 2500000] (imputed)	N
599	chr6_dbb_hap3	1867479	1867480	rs9262122	30169916	Sun Y	2018-08-31	J Eur Acad Dermatol Venereol	Investigation of the Predisposing Factor of Pemphigus and its clinical subtype through a Genome-wide association and next generation sequence analysis.	Pemphigus vulgaris	101 Chinese ancestry cases, 844 Chinese ancestry controls	at least 56 Chinese ancestry cases, up to 996 Chinese ancestry controls	6p21.33	NR	rs9262122-?	NR	5E-6	(adjusted for HLA-DRB1*14)	2.73		Illumina [5546030] (imputed)	N
599	chr6_dbb_hap3	1870418	1870419	rs1264419	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	6p21.33	NR	rs1264419-C	0.5128	9E-10		1.037	[1.03-1.05]	Affymetrix, Illumina [NR] (imputed)	N
599	chr6_dbb_hap3	1871972	1871973	rs2267637	33002439	Jin G	2020-10-01	Lancet Oncol	Genetic risk, incident gastric cancer, and healthy lifestyle: a meta-analysis of genome-wide association studies and prospective cohort study.	Gastric cancer	10,254 Han Chinese ancestry cases, 10,914 Han Chinese ancestry controls	NA	6p21.33	NR	rs2267637-T	0.31	3E-6		1.11	NR	Affymetrix, Illumina [6957974] (imputed)	N
599	chr6_dbb_hap3	1877770	1877771	rs55777621	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6p21.33	NR	rs55777621-?	NR	4E-12				Affymetrix [~ 8270000] (imputed)	N
599	chr6_dbb_hap3	1883023	1883024	rs111296996	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	6p21.33	MRPS18B	rs111296996-A	0.9872	5E-6		0.2039	[0.12-0.29] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
599	chr6_dbb_hap3	1887165	1887166	rs148828689	32599975	Bae JS	2020-06-30	Cancer Res Treat	Genome-Wide Association Study for the Identification of Novel Genetic Variants Associated with the Risk of Neuroblastoma in Korean Children.	Neuroblastoma (pediatric)	296 Korean ancestry child cases, 1,000 Korean ancestry adult controls	NA	6p21.33	MRPS18B	rs148828689-?		4E-18		7.8	[4.7-12.9]	Illumina [NR] (imputed)	N
599	chr6_dbb_hap3	1894868	1894869	rs12665339	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.33		rs12665339-A	0.85	3E-28				Affymetrix [10369434] (imputed)	N
599	chr6_dbb_hap3	1894868	1894869	rs12665339	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	6p21.33	ATAT1	rs12665339-G	0.17	6E-9		1.06	[1.04-1.08]	Illumina [20370935] (imputed)	N
599	chr6_dbb_hap3	1920877	1920878	rs1076829	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	DHX16	rs1076829-C	NR	4E-8		0.0176091	[0.011-0.024] unit decrease	Affymetrix [127266] (imputed)	N
599	chr6_dbb_hap3	1921913	1921914	rs1076828	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	DHX16	rs1076828-A	NR	2E-8		0.0180204	[0.012-0.024] unit decrease	Affymetrix [323858] (imputed)	N
599	chr6_dbb_hap3	1922618	1922619	rs74917683	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p21.33	NR	rs74917683-?	NR	2E-11		0.1491	[0.1-0.19] unit increase	Illumina [at least 560000] (imputed)	N
599	chr6_dbb_hap3	1927253	1927254	rs55740398	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	6p21.33		rs55740398-A	0.0027098	6E-6		0.29793	[0.17-0.43] unit increase	Affymetrix [15580782] (imputed)	N
599	chr6_dbb_hap3	1927536	1927537	rs3094097	31272903	Sunadome H	2019-07-01	Allergol Int	Correlation between eosinophil count, its genetic background and body mass index: The Nagahama Study.	Eosinophil counts	4,206 East Asian ancestry individuals	NA	6p21.33	NR	rs3094097-G	0.22	2E-9		0.1545	NR unit increase	Illumina [103680] (imputed)	N
599	chr6_dbb_hap3	1943687	1943688	rs9262142	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p21.33	NR	rs9262142-A	0.1166	3E-6	(EA)	0.0489	[0.028-0.069] unit decrease	Illumina [~ 11800000] (imputed)	N
599	chr6_dbb_hap3	1943979	1943980	rs2394392	31272903	Sunadome H	2019-07-01	Allergol Int	Correlation between eosinophil count, its genetic background and body mass index: The Nagahama Study.	Eosinophil counts	4,650 East Asian ancestry individuals	NA	6p21.33	NR	rs2394392-G	0.18	2E-8		0.1481	NR unit increase	Illumina [103680] (imputed)	N
599	chr6_dbb_hap3	1946442	1946443	rs9262143	33909500	Moll M	2021-04-28	Am J Physiol Lung Cell Mol Physiol	A Systematic Analysis of Protein-altering Exonic Variants in Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease	up to 31,465 European ancestry cases, up to 203,688 European ancestry controls, up to 1,413 African ancestry cases, up to 6,080 African ancestry controls, up to 287 East Asian ancestry cases, up to 7,484 East Asian ancestry controls, up to 61 Hispanic cases, up to 613 Hispanic controls	NA	6p21.33	PPP1R18	rs9262143-T	0.14	1E-13		1.11	[1.08 -1.15]	Illumina [at least 109036]	N
599	chr6_dbb_hap3	1946442	1946443	rs9262143	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p21.33	PPP1R18	rs9262143-T		3E-28		0.036	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
599	chr6_dbb_hap3	1946443	1946444	rs138394556	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	6p21.33	NRM	rs138394556-A	0.1475	2E-8		0.018794373	[0.012-0.025] unit decrease	Affymetrix [11515109] (imputed)	N
599	chr6_dbb_hap3	1950508	1950509	rs2269705	27151647	Chen G	2016-05-05	Addict Biol	An association study revealed substantial effects of dominance, epistasis and substance dependence co-morbidity on alcohol dependence symptom count.	Alcohol dependence symptom count	2,605 European ancestry individuals, 1,233 African American individuals	NA	6p21.33	NRM	rs2269705-?		3E-10	(additive)	0.266	[0.18-0.35] unit decrease	Illumina [974863]	N
599	chr6_dbb_hap3	1950676	1950677	rs3094092	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	6p21.33	NRM	rs3094092-T	NR	2E-8		0.036598	[0.024-0.049] unit increase	Illumina [13520550] (imputed)	N
599	chr6_dbb_hap3	1956725	1956726	rs137934746	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p21.33	NR	rs137934746-?	NR	1E-6		0.2471	[0.15-0.35] unit decrease	Illumina [at least 560000] (imputed)	N
599	chr6_dbb_hap3	1958110	1958111	rs370462350	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	6p21.33	NRM	rs370462350-?	NR	2E-9		0.375	[0.25-0.5] unit decrease	Illumina [34656550] (imputed)	N
599	chr6_dbb_hap3	1959184	1959185	rs149856401	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Stable angina pectoris	17,894 European ancestry cases, 325,132 European ancestry controls, 18,833 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	6p21.33		rs149856401-G	NR	1E-13		0.1724	[0.13-0.22] unit increase	Affymetrix, Illumina [20456336] (imputed)	N
599	chr6_dbb_hap3	1960105	1960107	rs147637345	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p21.33	NR	rs147637345-?	NR	1E-7		0.0819	[0.052-0.112] unit increase	Illumina [at least 560000] (imputed)	N
599	chr6_dbb_hap3	1960105	1960107	rs147637345	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	6p21.33	NR	rs147637345-?	NR	4E-6		0.0842	[0.048-0.12] unit decrease	Illumina [at least 560000] (imputed)	N
599	chr6_dbb_hap3	1960328	1960329	rs9468811	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs9468811-C	0.937946818961625	6E-7	(IGP19)	0.3471	[0.21-0.48] unit decrease	Illumina [~ 2500000] (imputed)	N
599	chr6_dbb_hap3	1960328	1960329	rs9468811	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs9468811-C	0.937725588025022	3E-6	(IGP74)	0.3262	[0.19-0.46] unit decrease	Illumina [~ 2500000] (imputed)	N
599	chr6_dbb_hap3	1960328	1960329	rs9468811	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs9468811-C	0.937641317877842	2E-6	(IGP75)	0.3304	[0.19-0.47] unit decrease	Illumina [~ 2500000] (imputed)	N
599	chr6_dbb_hap3	1960328	1960329	rs9468811	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs9468811-C	0.937418950958538	3E-6	(IGP69)	0.3228	[0.19-0.46] unit decrease	Illumina [~ 2500000] (imputed)	N
599	chr6_dbb_hap3	1960328	1960329	rs9468811	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs9468811-C	0.937308425901202	5E-7	(IGP76)	0.3469	[0.21-0.48] unit increase	Illumina [~ 2500000] (imputed)	N
599	chr6_dbb_hap3	1962928	1962929	rs115448006	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.33	NR	rs115448006-T	0.01	5E-11		0.599756	[0.42-0.78] unit increase	Affymetrix [up to 8900000] (imputed)	N
600	chr6_dbb_hap3	1973286	1973287	rs3094093	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs3094093-T	0.107712365538735	8E-6	(IGP65)	0.2214	[0.12-0.32] unit decrease	Illumina [~ 2500000] (imputed)	N
600	chr6_dbb_hap3	1973286	1973287	rs3094093	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs3094093-T	0.107418420152946	8E-6	(IGP2)	0.2231	[0.13-0.32] unit increase	Illumina [~ 2500000] (imputed)	N
600	chr6_dbb_hap3	1973286	1973287	rs3094093	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs3094093-T	0.107325880449438	3E-6	(IGP42)	0.2336	[0.14-0.33] unit increase	Illumina [~ 2500000] (imputed)	N
600	chr6_dbb_hap3	1979078	1979079	rs4713354	31272903	Sunadome H	2019-07-01	Allergol Int	Correlation between eosinophil count, its genetic background and body mass index: The Nagahama Study.	Eosinophil counts	4,650 East Asian ancestry individuals	NA	6p21.33	MDC1	rs4713354-C	0.216	2E-8		0.14	NR unit increase	Illumina [103680] (imputed)	N
600	chr6_dbb_hap3	1981129	1981130	rs117670375	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Gynecologic disease (multivariate analysis)	up to 7,975 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs117670375-?		1E-8	(uterine cervical cancer)			Illumina [7645193] (imputed)	N
600	chr6_dbb_hap3	1981129	1981130	rs117670375	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Gynecologic disease	7,975 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs117670375-?		1E-7		1.16	[1.10-1.22]	Illumina [7645193] (imputed)	N
600	chr6_dbb_hap3	1981129	1981130	rs117670375	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Gynecologic disease	7,315 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs117670375-?		2E-10				Illumina [7645193] (imputed)	N
600	chr6_dbb_hap3	1981129	1981130	rs117670375	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs117670375-?		2E-9		1.07	[1.05-1.09]	Illumina [7645193] (imputed)	N
600	chr6_dbb_hap3	1981129	1981130	rs117670375	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs117670375-?		3E-10		1.92	[1.57-2.35]	Illumina [7645193] (imputed)	N
600	chr6_dbb_hap3	1982084	1982085	rs3132584	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	TUBB	rs3132584-T	NR	1E-8		0.021321	[0.014-0.029] unit decrease	Affymetrix [323858] (imputed)	N
600	chr6_dbb_hap3	1982084	1982085	rs3132584	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	TUBB	rs3132584-T	NR	3E-8		0.0206734	[0.013-0.028] unit decrease	Affymetrix [127266] (imputed)	N
600	chr6_dbb_hap3	1982084	1982085	rs3132584	32989287	Cuellar-Partida G	2020-09-28	Nat Hum Behav	Genome-wide association study identifies 48 common genetic variants associated with handedness.	Left-handedness	1,766,671 European ancestry individuals	NA	6p21.33	TUBB	rs3132584-T	0.2056	6E-25		0.95483845	[NR]	Illumina [12493444] (imputed)	N
600	chr6_dbb_hap3	1986778	1986779	rs7781	33723403	Sha Z	2021-03-15	Nat Hum Behav	The genetic architecture of structural left-right asymmetry of the human brain.	Left-right brain asymmetry	32,256 European ancestry individuals	NA	6p21.33	TUBB	rs7781-G	0.24	2E-10				NR [9312144] (imputed)	N
600	chr6_dbb_hap3	1988031	1988032	rs3094128	31504236	Wiberg A	2019-09-05	Brain	Handedness, language areas and neuropsychiatric diseases: insights from brain imaging and genetics.	Handedness (non-right-handed vs right-handed)	44,631 European ancestry non-right-handed individuals, 356,567 European ancestry right-handed individuals	NA	6p21.33	TUBB, MICB, FLOT1	rs3094128-?	0.789	3E-8		1.0526316	[1.03-1.06]	NR [~ 11000000] (imputed)	N
600	chr6_dbb_hap3	1991104	1991105	rs3094127	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p21.33	FLOT1	rs3094127-A	NR	2E-8		5.644	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
600	chr6_dbb_hap3	1992198	1992199	rs1064627	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	FLOT1	rs1064627-G	NR	2E-8		0.0196765	[0.013-0.027] unit increase	Affymetrix [321016] (imputed)	N
600	chr6_dbb_hap3	1992198	1992199	rs1064627	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p21.33	NR	rs1064627-G	0.2	3E-13		1.15	[1.11-1.2]	Affymetrix [9886854] (imputed)	N
600	chr6_dbb_hap3	1992198	1992199	rs1064627	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p21.33	NR	rs1064627-G	0.2	1E-18			[NR]	Affymetrix [9886854] (imputed)	N
600	chr6_dbb_hap3	1992198	1992199	rs1064627	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p21.33	NR	rs1064627-G	0.2	2E-16		1.13	[1.1-1.16]	Affymetrix [9886854] (imputed)	N
600	chr6_dbb_hap3	1992198	1992199	rs1064627	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p21.33	NR	rs1064627-G	0.2	2E-17			[NR]	Affymetrix [9886854] (imputed)	N
600	chr6_dbb_hap3	1992198	1992199	rs1064627	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in non-current smokers	16,488 European ancestry cases, 169,688 European ancestry controls	NA	6p21.33	NR	rs1064627-G	0.2	2E-16		1.13	[1.1-1.16]	Affymetrix [9886854] (imputed)	N
600	chr6_dbb_hap3	1992198	1992199	rs1064627	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in never smokers	8,631 European ancestry cases, 120,544 European ancestry controls	NA	6p21.33	NR	rs1064627-G	0.2	1E-13		1.16	[1.11-1.2]	Affymetrix [9886854] (imputed)	N
600	chr6_dbb_hap3	1992198	1992199	rs1064627	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in ever smokers	12,446 European ancestry cases, 59,145 European ancestry controls	NA	6p21.33	NR	rs1064627-G	0.2	1E-7		1.1	[1.06-1.14]	Affymetrix [9886854] (imputed)	N
600	chr6_dbb_hap3	2007238	2007239	rs2284174	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	6p21.33	IER3	rs2284174-C	0.22	2E-21		1.12	[1.10-1.15]	Affymetrix, Illumina [6224355] (imputed)	N
600	chr6_dbb_hap3	2007238	2007239	rs2284174	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p21.33	NR	rs2284174-C	0.2189	1E-12		0.0102	[0.0075-0.0129] unit decrease	NR [7666894] (imputed)	N
600	chr6_dbb_hap3	2007466	2007467	rs3130662	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p21.33	IER3, DDR1	rs3130662-A	0.334	1E-25				Illumina [118177]	N
600	chr6_dbb_hap3	2010916	2010917	rs3129972	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of saturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	6p21.33		rs3129972-C	0.858209	1E-8		0.0336102	[0.022-0.045] unit decrease	NR [11722792] (imputed)	N
600	chr6_dbb_hap3	2011693	2011694	rs2535324	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	RN7SL353P	rs2535324-C	NR	2E-9		0.0198337	[0.013-0.026] unit decrease	Affymetrix [127266] (imputed)	N
600	chr6_dbb_hap3	2013969	2013970	rs28780111	30552173	Aterido A	2018-12-14	Ann Rheum Dis	Genetic variation at the glycosaminoglycan metabolism pathway contributes to the risk of psoriatic arthritis but not psoriasis.	Psoriatic arthritis	744 Spanish ancestry cases, 1,454 Spanish ancestry controls	1,430 cases, 1,417 controls	6p21.33	NR	rs28780111-?	NR	7E-11		6.51	[NR] z-score increase	Illumina [1387382] (imputed)	N
600	chr6_dbb_hap3	2017822	2017823	rs12213680	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	6p21.33	RN7SL353P	rs12213680-A	0.171261	4E-17		0.0263628	[0.02-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
600	chr6_dbb_hap3	2020719	2020720	rs3095340	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p21.33	HCG20	rs3095340-A	NR	4E-8		5.51	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
600	chr6_dbb_hap3	2021565	2021566	rs3131035	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCG20	rs3131035-G	NR	4E-11		0.024688	[0.017-0.032] unit decrease	Affymetrix [323858] (imputed)	N
600	chr6_dbb_hap3	2021565	2021566	rs3131035	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HCG20	rs3131035-G	NR	4E-10		0.0233656	[0.016-0.031] unit decrease	Affymetrix [127266] (imputed)	N
600	chr6_dbb_hap3	2024120	2024121	rs9262172	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.33		rs9262172-T	0.742	1E-26				Affymetrix [10369434] (imputed)	N
600	chr6_dbb_hap3	2024741	2024742	rs3094121	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCG20	rs3094121-T	NR	3E-8		0.0199067	[0.013-0.027] unit increase	Affymetrix [323123] (imputed)	N
600	chr6_dbb_hap3	2029928	2029929	rs12526186	19721433	McClay JL	2009-09-01	Mol Psychiatry	Genome-wide pharmacogenomic analysis of response to treatment with antipsychotics.	Response to antipsychotic treatment	494 European ancestry cases, 244 African American and other ancestry cases	NA	6p21.33	intergenic	rs12526186-?	NR	3E-6	(risperidone)	9.0	[NR] % variance	Affymetrix, Perlegen [492900]	N
600	chr6_dbb_hap3	2031263	2031264	rs3094117	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine without aura	7,107 European ancestry cases, 69,427 European ancestry controls	NA	6p21.33	intergenic	rs3094117-?	0.77	2E-6		1.12	[1.06-1.18]	Affymetrix, Illumina [~ 2300000] (imputed)	N
600	chr6_dbb_hap3	2039578	2039579	rs3129977	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p21.33	HCG20	rs3129977-A	NR	8E-11		6.498	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
600	chr6_dbb_hap3	2046707	2046708	rs147206302	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	6p21.33	HCG20	rs147206302-T	0.0032	7E-9		0.1843882	[0.12-0.25] unit decrease	Affymetrix [~ 2500000] (imputed)	N
600	chr6_dbb_hap3	2052553	2052554	rs3131043	31089142	Law PJ	2019-05-14	Nat Commun	Association analyses identify 31 new risk loci for colorectal cancer susceptibility.	Colorectal cancer	31,197 European ancestry cases, 61,770 European ancestry controls	NA	6p21.33	NR	rs3131043-G	0.43	3E-8		1.07	[1.05-1.1]	Affymetrix, Illumina [> 10000000] (imputed)	N
600	chr6_dbb_hap3	2052944	2052945	rs3129981	31358989	Gelernter J	2019-07-29	Nat Neurosci	Genome-wide association study of post-traumatic stress disorder reexperiencing symptoms in >165,000 US veterans.	Post-traumatic stress disorder (re-experiencing symptoms)	146,660 European ancestry individuals, 19,983 African American individuals	117,900 European ancestry individuals	6p21.33	NR	rs3129981-?	NR	2E-7	(AA)	0.347197	[NR] unit increase	Affymetrix [49134253] (imputed)	N
600	chr6_dbb_hap3	2055659	2055660	rs3129984	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p21.33	NR	rs3129984-T	0.1179	8E-6	(EA)	0.0465	[0.026-0.067] unit decrease	Illumina [~ 11800000] (imputed)	N
600	chr6_dbb_hap3	2056179	2056180	rs3131057	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	6p21.33	HCG20, LINC00243	rs3131057-C	0.6028	8E-17		0.03073045	[0.024-0.038] unit decrease	Affymetrix [~ 2500000] (imputed)	N
600	chr6_dbb_hap3	2056220	2056221	rs11961980	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	6p21.33	HCG20, LINC00243	rs11961980-T	0.0038	2E-12		0.2133187	[0.15-0.27] unit decrease	Affymetrix [~ 2500000] (imputed)	N
600	chr6_dbb_hap3	2056220	2056221	rs11961980	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	6p21.33	HCG20, LINC00243	rs11961980-T	0.0038	1E-11		0.206328	[0.15-0.27] unit decrease	Affymetrix [~ 2500000] (imputed)	N
600	chr6_dbb_hap3	2057377	2057378	rs3131060	25827949	Kunz M	2015-05-04	Exp Dermatol	Genome-wide association study identifies new susceptibility loci for cutaneous lupus erythematosus.	Cutaneous lupus erythematosus	151 European ancestry cases, 1,288 European ancestry controls	219 European ancestry cases, 262 European ancestry controls	6p21.33	FLOT1	rs3131060-A	0.112	1E-13		2.3	[1.71-3.11]	Affymetrix [906600]	N
600	chr6_dbb_hap3	2057979	2057980	rs3131064	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p21.33	LINC00243	rs3131064-T	NR	2E-9		5.983	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
600	chr6_dbb_hap3	2058561	2058561	rs368739359	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	LINC00243	rs368739359-TAATG	NR	3E-8		0.0252092	[0.016-0.034] unit increase	Affymetrix [323123] (imputed)	N
600	chr6_dbb_hap3	2059655	2059656	rs1264376	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	LINC00243	rs1264376-A	NR	2E-13		0.0302583	[0.022-0.038] unit decrease	Affymetrix [323858] (imputed)	N
600	chr6_dbb_hap3	2059655	2059656	rs1264376	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	LINC00243	rs1264376-A	NR	3E-12		0.0288183	[0.021-0.037] unit decrease	Affymetrix [127266] (imputed)	N
600	chr6_dbb_hap3	2059971	2059972	rs10947096	29534301	Nishida N	2018-03-13	Hepatology	Key HLA-DRB1-DQB1 haplotypes and role of the BTNL2 gene for response to a hepatitis B vaccine.	Response to hepatitis B vaccine	107 Japanese ancestry low responder individuals, 351 Japanese ancestry intermediate responder individuals, 735 Japanese ancestry high responder individuals	NA	6p21.33	DDR1	rs10947096-?		2E-6		0.197	unit increase	Affymetrix [427664]	N
600	chr6_dbb_hap3	2060280	2060281	rs3129987	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Stable angina pectoris	18,833 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	6p21.33		rs3129987-C	0.884926231	3E-14		0.14236389	[0.11-0.18] unit decrease	Illumina [13427711] (imputed)	N
600	chr6_dbb_hap3	2060287	2060288	rs1264375	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	LINC00243	rs1264375-C	NR	1E-9		0.0209768	[0.014-0.028] unit decrease	Affymetrix [323858] (imputed)	N
600	chr6_dbb_hap3	2061021	2061022	rs4587207	25469926	Gottlieb DJ	2014-12-02	Mol Psychiatry	Novel loci associated with usual sleep duration: the CHARGE Consortium Genome-Wide Association Study.	Sleep duration	47,180 European ancestry individuals	4,771 African American individuals	6p21.33	FLOT1, LINC00243, IER3	rs4587207-G	0.20	2E-8	(EA)	3.14	[2.04-4.24] unit decrease	Affymetrix, Illumina [2033301]	N
600	chr6_dbb_hap3	2064363	2064364	rs1264371	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p21.33	NR	rs1264371-T	0.352	2E-8	(IFNAR2_of_CD20p)			Illumina [5084123] (imputed)	N
600	chr6_dbb_hap3	2064784	2064785	rs114376405	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p21.33	NR	rs114376405-?	NR	2E-6		0.2339	[0.14-0.33] unit increase	Illumina [at least 560000] (imputed)	N
600	chr6_dbb_hap3	2067393	2067394	rs4713376	30958311	Tao F	2019-04-03	J Neuromuscul Dis	Modifier Gene Candidates in Charcot-Marie-Tooth Disease Type 1A: A Case-Only Genome-Wide Association Study.	Decreased fine motor function in Charcot-Marie-Tooth disease 1A (eating with utensils)	132 European ancestry severe cases, 288 European ancestry mild cases	NA	6p21.33	HCG20, LINC00243, TUBB, FLOT1, IER3	rs4713376-C	0.174	1E-6		3.288	[2.041-5.297]	Illumina [600000]	N
600	chr6_dbb_hap3	2068445	2068446	rs3130783	23455636	Fritsche LG	2013-03-03	Nat Genet	Seven new loci associated with age-related macular degeneration.	Age-related macular degeneration	6,713 European ancestry cases, 48,402 European ancestry contols, 110 Southern Indian ancestry cases, 119 Southern Indian ancestry controls, 827 Japanese ancestry cases, 3,323 Japanese ancestry controls	9,070 European ancestry cases, 7,683 European ancestry contols, 461 East Asian ancestry cases, 547 East Asian ancestry controls	6p21.33	IER3, DDR1	rs3130783-A	0.79	2E-11		1.16	[1.11-1.20]	Affymetrix, Illumina [2442884] (imputed)	N
600	chr6_dbb_hap3	2069214	2069215	rs151302046	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.33	NR	rs151302046-A	0.011	6E-12		0.591132	[0.42-0.76] unit increase	Affymetrix [up to 8900000] (imputed)	N
600	chr6_dbb_hap3	2069684	2069685	rs1264363	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p21.33	NR	rs1264363-?	NR	8E-16		0.1077	[0.081-0.134] unit decrease	Illumina [at least 560000] (imputed)	N
600	chr6_dbb_hap3	2072375	2072376	rs73437885	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	6p21.33	NR	rs73437885-?	NR	8E-6		0.0081424	[0.0046-0.0117] unit increase	Affymetrix [805426] (imputed)	N
600	chr6_dbb_hap3	2074384	2074384	rs36091944	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	LINC00243	rs36091944-C	NR	3E-8		0.0230514	[0.015-0.031] unit decrease	Affymetrix [321016] (imputed)	N
600	chr6_dbb_hap3	2076115	2076116	rs886424	25936594	Tomer Y	2015-04-27	J Autoimmun	Genome wide identification of new genes and pathways in patients with both autoimmune thyroiditis and type 1 diabetes.	Type 1 diabetes and autoimmune thyroid diseases	346 European ancestry cases, 727 European ancestry controls	185 European ancestry cases, 340 European ancestry controls	6p21.33	IER3, DDR1	rs886424-A	NR	3E-14		2.2107		Illumina [514008]	N
600	chr6_dbb_hap3	2076115	2076116	rs886424	22688191	Bergen SE	2012-06-12	Mol Psychiatry	Genome-wide association study in a Swedish population yields support for greater CNV and MHC involvement in schizophrenia compared with bipolar disorder.	Bipolar disorder and schizophrenia	2,111 European ancestry schizophrenia cases, 836 European ancestry bipolar disorder cases, 2,535 European ancestry controls	NA	6p21.33	other genes, MHC	rs886424-?	NR	9E-7		1.37	[NR]	Affymetrix [745006]	N
600	chr6_dbb_hap3	2077467	2077468	rs9501489	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	LINC00243	rs9501489-A	NR	2E-10		0.0672114	[0.047-0.088] unit decrease	Affymetrix [321016] (imputed)	N
600	chr6_dbb_hap3	2077467	2077468	rs9501489	31235810	Fung K	2019-06-24	Sci Rep	Genome-wide association study identifies loci for arterial stiffness index in 127,121 UK Biobank participants.	Arterial stiffness index	127,121 European ancestry individuals	NA	6p21.33	DDR1	rs9501489-G	0.981	4E-6		0.067	[0.04-0.094] unit increase	Affymetrix [~ 10446505] (imputed)	N
600	chr6_dbb_hap3	2077712	2077713	rs142090224	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Chickenpox	107,769 European ancestry cases, 15,982 European ancestry controls	NA	6p21.33	NR	rs142090224-?	NR	3E-6		0.1169	[0.068-0.166] unit decrease	Illumina [at least 560000] (imputed)	N
600	chr6_dbb_hap3	2078258	2078259	rs1264355	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	6p21.33	NR	rs1264355-?	NR	2E-7		0.0847	[0.053-0.117] unit decrease	Illumina [at least 560000] (imputed)	N
600	chr6_dbb_hap3	2078409	2078410	rs574050376	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	LINC00243	rs574050376-T	NR	5E-9		0.082304	[0.055-0.11] unit decrease	Affymetrix [321016] (imputed)	N
600	chr6_dbb_hap3	2078409	2078410	rs574050376	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.33	NR	rs574050376-T	0.02613	2E-8	(AFMID)	0.0124	NR unit increase	Illumina [1671387] (imputed)	N
600	chr6_dbb_hap3	2081832	2081833	rs1264353	27659466	van der Harst P	2016-09-27	J Am Coll Cardiol	52 Genetic Loci Influencing Myocardial Mass.	QRS complex (Cornell)	up to 58,172 European ancestry individuals, up to 690 Orcadian (founder/genetic isolate) individuals	13,263 European ancestry individuals, 3,603 African American individuals, 4,619 Indian ancestry individuals	6p21.33	NR	rs1264353-?	NR	7E-6	(EA)			Affymetrix, Illumina, Perlegen [2766983] (imputed)	N
600	chr6_dbb_hap3	2085265	2085266	rs13208886	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p21.33	NR	rs13208886-?	NR	9E-12		0.1216	[0.087-0.156] unit decrease	Illumina [at least 560000] (imputed)	N
600	chr6_dbb_hap3	2086189	2086190	rs1264351	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	6p21.33	AK098012	rs1264351-C	0.1265	2E-8	(EA)	0.0032	[0.002-0.0044] unit decrease	Affymetrix [NR] (imputed)	N
600	chr6_dbb_hap3	2086189	2086190	rs1264351	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	6p21.33	AK098012	rs1264351-C	0.126	9E-10		0.0033	[0.0021-0.0045] unit decrease	Affymetrix [NR] (imputed)	N
600	chr6_dbb_hap3	2088416	2088417	rs4248151	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.33		rs4248151-T	0.722	2E-11				Affymetrix [10369434] (imputed)	N
600	chr6_dbb_hap3	2089241	2089242	rs7772131	22566498	Turner ST	2012-05-07	Hypertension	Genomic association analysis identifies multiple loci influencing antihypertensive response to an angiotensin II receptor blocker.	Response to angiotensin II receptor blocker therapy	198 European ancestry hypertensive individuals, 193 African American hypertensive individuals	NA	6p21.33	C6orf214	rs7772131-?	NR	3E-6	(AA)	6.73	[0.89-12.57] unit decrease	Affymetrix [~ 2300000] (imputed)	N
600	chr6_dbb_hap3	2090615	2090616	rs1264350	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	6p21.33	IER3, DDR1	rs1264350-T	NR	1E-7		0.151743	[0.096-0.208] unit increase	Illumina [at least 950000] (imputed)	N
600	chr6_dbb_hap3	2090729	2090730	rs1264349	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA	6p21.33	NR	rs1264349-?	NR	4E-6		0.0514	[0.03-0.073] unit decrease	Illumina [at least 560000] (imputed)	N
600	chr6_dbb_hap3	2092061	2092062	rs7749924	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs7749924-C	0.851598582628062	8E-6	(IGP32)	0.2204	[0.12-0.32] unit increase	Illumina [~ 2500000] (imputed)	N
600	chr6_dbb_hap3	2092347	2092348	rs78868683	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs78868683-?		3E-7		1.05	[1.03-1.08]	Illumina [7645193] (imputed)	N
600	chr6_dbb_hap3	2092347	2092348	rs78868683	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs78868683-?		1E-7		1.68	[1.39-2.04]	Illumina [7645193] (imputed)	N
600	chr6_dbb_hap3	2092394	2092395	rs3130646	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.33	Intergenic	rs3130646-G	NR	3E-6		0.0231949	[0.013-0.033] unit decrease	Illumina [13520550] (imputed)	N
600	chr6_dbb_hap3	2092768	2092769	rs1264347	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in diabetes	70,762 European ancestry individuals, 20,967 African American individuals	NA	6p21.33	AK098012	rs1264347-T	0.109	1E-12		1.01	[0.73-1.29] unit decrease	Affymetrix [NR] (imputed)	N
600	chr6_dbb_hap3	2092768	2092769	rs1264347	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.33	LINC00243	rs1264347-T	0.1326	5E-7		0.0552	[0.034-0.077] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
600	chr6_dbb_hap3	2093468	2093469	rs9501030	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	6p21.33	IER3, DDR1	rs9501030-A	0.16	4E-10		6.27	z-score increase	Affymetrix [4311822] (imputed)	N
600	chr6_dbb_hap3	2093468	2093469	rs9501030	20848476	Haritunians T	2010-11-01	Inflamm Bowel Dis	Genetic predictors of medically refractory ulcerative colitis.	Ulcerative colitis	324 European ancestry medically refractory ulcerative colitis cases, 537 European ancestry non-medically refractory ulcerative colitis cases, 2,601 European ancestry controls	NA	6p21.33	IER3, GTF2H4, FLOT1, VARS2, MIR588, DDR1	rs9501030-A	NR	4E-6	(Analysis II)			Illumina [313720]	N
601	chr6_dbb_hap3	2102830	2102831	rs2517582	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG27H4.8	rs2517582-T	NR	3E-11		0.019246	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
601	chr6_dbb_hap3	2102830	2102831	rs2517582	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG27H4.8	rs2517582-T	NR	8E-11		0.0187782	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
601	chr6_dbb_hap3	2102830	2102831	rs2517582	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG27H4.8	rs2517582-T	NR	4E-9		0.0185153	[0.012-0.025] unit decrease	Affymetrix [323123] (imputed)	N
601	chr6_dbb_hap3	2102830	2102831	rs2517582	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG27H4.8	rs2517582-T	NR	3E-9		0.0173144	[0.012-0.023] unit increase	Affymetrix [321169] (imputed)	N
601	chr6_dbb_hap3	2102830	2102831	rs2517582	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	6p21.33	NR	rs2517582-T	0.383721	5E-18		0.0135974	[0.011-0.016] unit increase	Affymetrix [16578495] (imputed)	N
601	chr6_dbb_hap3	2102830	2102831	rs2517582	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	6p21.33	NR	rs2517582-T	0.38430299999999995	2E-18		0.0277124	[0.022-0.033] unit increase	Affymetrix [16580851] (imputed)	N
601	chr6_dbb_hap3	2102830	2102831	rs2517582	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.33	XXbac-BPG27H4.8	rs2517582-T	0.4084	4E-6		0.0319	[0.018-0.045] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
601	chr6_dbb_hap3	2102830	2102831	rs2517582	28468790	Agopian AJ	2017-06-01	Circ Cardiovasc Genet	Genome-Wide Association Studies and Meta-Analyses for Congenital Heart Defects.	Conotruncal heart defects (maternal effects)	up to 838 European ancestry trios	NA	6p21.33	GTF2H4, VARS2	rs2517582-?	NR	3E-7		1.174787	[1.104793-1.249214]	Illumina [at least 4756722] (imputed)	N
601	chr6_dbb_hap3	2104124	2104125	rs2517580	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG27H4.8	rs2517580-A	NR	4E-8		0.0175646	[0.011-0.024] unit increase	Affymetrix [319769] (imputed)	N
601	chr6_dbb_hap3	2111948	2111949	rs2844662	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.33		rs2844662-C	0.624	2E-43				Affymetrix [10369434] (imputed)	N
601	chr6_dbb_hap3	2112417	2112418	rs139507938	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1a levels	3,522 Finnish ancestry individuals	NA	6p21.33	NR	rs139507938-G	NR	7E-6		0.907	[0.51-1.3] SD units increase	NR [10700000] (imputed)	N
601	chr6_dbb_hap3	2114442	2114443	rs2263298	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p21.33	NR	rs2263298-?	NR	3E-9		0.0842	[0.056-0.112] unit decrease	Illumina [at least 560000] (imputed)	N
601	chr6_dbb_hap3	2126143	2126144	rs2535326	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	RN7SKP186	rs2535326-T	NR	1E-10		0.0207397	[0.014-0.027] unit increase	Affymetrix [323858] (imputed)	N
601	chr6_dbb_hap3	2126143	2126144	rs2535326	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	RN7SKP186	rs2535326-T	NR	3E-9		0.019109	[0.013-0.025] unit increase	Affymetrix [127266] (imputed)	N
601	chr6_dbb_hap3	2126199	2126200	rs3130792	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DDR1	5,364 Icelandic ancestry individuals	NA	6p21.33		rs3130792-T	0.4372	7E-54		0.279081	[0.24-0.31] unit increase	Illumina [7506463] (imputed)	N
601	chr6_dbb_hap3	2132123	2132124	rs2535341	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p21.33	DDR1-AS1	rs2535341-C	NR	2E-8		0.0208511	[0.014-0.028] unit decrease	Affymetrix [323858] (imputed)	N
601	chr6_dbb_hap3	2139651	2139652	rs1264332	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	6p21.33	NR	rs1264332-C	0.35264300000000004	2E-22		0.0233666	[0.019-0.027] unit increase	Affymetrix [16583148] (imputed)	N
601	chr6_dbb_hap3	2142355	2142356	rs7756521	20041166	Fellay J	2009-12-24	PLoS Genet	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA		VARS2, DDR1, DPCR1	rs7756521-?	NR	1E-6	(progression)			Illumina [NR]	N
601	chr6_dbb_hap3	2143226	2143227	rs885910	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	DDR1	rs885910-T	NR	9E-9		0.0184374	[0.012-0.025] unit decrease	Affymetrix [323858] (imputed)	N
601	chr6_dbb_hap3	2143226	2143227	rs885910	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	DDR1	rs885910-T	NR	4E-8		0.0176635	[0.011-0.024] unit decrease	Affymetrix [127266] (imputed)	N
601	chr6_dbb_hap3	2151995	2151996	rs1264322	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking initiation (ever regular vs never regular)	up to 433,216 European ancestry individuals	NA	6p21.33	DDR1	rs1264322-A	0.146	2E-8		0.0171	[0.011-0.023] unit decrease	Illumina [~ 250000] (imputed)	N
601	chr6_dbb_hap3	2152355	2152356	rs7743661	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p21.33	DDR1	rs7743661-C	0.25	1E-6	(Turkish)	1.62	[1.33-1.97]	Illumina [up to 547389]	N
601	chr6_dbb_hap3	2160459	2160460	rs2524236	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	QRS duration	3,274 African American individuals, 13,420 Hispanic/Latino individuals, 126 Asian ancestry individuals, 226 Native American ancestry individuals	NA	6p21.33	HCG22	rs2524236-?	NR	1E-10		0.6324871	[0.44-0.83] unit decrease	Illumina [26566045] (imputed)	N
601	chr6_dbb_hap3	2167613	2167614	rs111782145	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	6p21.33	CDSN, DPCR1, GTF2H4	rs111782145-C	NR	2E-8	(Chinese)	1.2300123	[1.16-1.3]	Affymetrix, Illumina [up to 5107227] (imputed)	N
601	chr6_dbb_hap3	2170263	2170264	rs1052693	23028341	Yang X	2012-09-13	PLoS Genet	Genome-wide association study for serum complement C3 and C4 levels in healthy Chinese subjects.	Complement C3 and C4 levels	1,999 Han Chinese ancestry male individuals	1,496 Han Chinese ancestry male individuals	6p21.33	HLA-A	rs1052693-G	0.36	3E-48	(Serum level of C4)	0.1	[0.080-0.120] g/L increase	Illumina [1940245] (imputed)	N
601	chr6_dbb_hap3	2173747	2173748	rs886420	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p21.33	GTF2H4	rs886420-A	0.311	2E-24				Illumina [118177]	N
601	chr6_dbb_hap3	2174098	2174099	rs1264308	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Squamous cell lung carcinoma	8,350 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	6p21.33	NR	rs1264308-T	NR	6E-10		1.29	[1.19-1.40]	NR [NR] (imputed)	N
601	chr6_dbb_hap3	2174098	2174099	rs1264308	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Non-small cell lung cancer	27,120 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	6p21.33	NR	rs1264308-T	NR	2E-7		1.16	[1.1-1.23]	NR [NR] (imputed)	N
601	chr6_dbb_hap3	2178303	2178304	rs146114215	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.33		rs146114215-G	0.995	1E-22				Affymetrix [10369434] (imputed)	N
601	chr6_dbb_hap3	2178303	2178304	rs146114215	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	6p21.33		rs146114215-G	0.995	9E-15				Affymetrix [10369434] (imputed)	N
601	chr6_dbb_hap3	2178303	2178304	rs146114215	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	6p21.33		rs146114215-G	0.995	1E-16				Affymetrix [10369434] (imputed)	N
601	chr6_dbb_hap3	2178303	2178304	rs146114215	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs146114215-G	0.995	5E-26				Affymetrix [10369434] (imputed)	N
601	chr6_dbb_hap3	2181574	2181575	rs118124843	31537649	Salem RM	2019-09-19	J Am Soc Nephrol	Genome-Wide Association Study of Diabetic Kidney Disease Highlights Biology Involved in Glomerular Basement Membrane Collagen.	Microalbuminuria in type 1 diabetes	2,447 European ancestry cases, 12,113 European ancestry controls	NA	6p21.33	DDR1, VARS2	rs118124843-T	0.011	4E-8		3.79	[NR]	Illumina [up to 49000000] (imputed)	N
601	chr6_dbb_hap3	2184609	2184610	rs2074506	33909500	Moll M	2021-04-28	Am J Physiol Lung Cell Mol Physiol	A Systematic Analysis of Protein-altering Exonic Variants in Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease	up to 31,465 European ancestry cases, up to 203,688 European ancestry controls, up to 1,413 African ancestry cases, up to 6,080 African ancestry controls, up to 287 East Asian ancestry cases, up to 7,484 East Asian ancestry controls, up to 61 Hispanic cases, up to 613 Hispanic controls	NA	6p21.33	VARS2	rs2074506-G	0.65	3E-7		1.06	[1.03 -1.08]	Illumina [at least 109036]	N
601	chr6_dbb_hap3	2184997	2184998	rs753725	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	6p21.33	VARS2	rs753725-T	0.4062	1E-9		0.0205	[0.014-0.027] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
601	chr6_dbb_hap3	2184997	2184998	rs753725	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	6p21.33	VARS2	rs753725-T	0.4562	3E-7		0.020761	[0.013-0.029] mg/dL increase	Affymetrix, Illumina [8217339] (imputed)	N
601	chr6_dbb_hap3	2191883	2191884	rs2532929	28877031	Zhang G	2017-09-07	N Engl J Med	Genetic Associations with Gestational Duration and Spontaneous Preterm Birth.	Gestational age at birth (maternal effect)	43,568 European ancestry mothers	8,643 European ancestry mothers	6p21.33	SFTA2, VARS2, DPCR1	rs2532929-G	0.397	2E-6		0.622	[NR] unit decrease	Illumina [15635593] (imputed)	N
601	chr6_dbb_hap3	2193759	2193760	rs3095152	32771030	Tangtanatakul P	2020-08-08	Arthritis Res Ther	Meta-analysis of genome-wide association study identifies FBN2 as a novel locus associated with systemic lupus erythematosus in Thai population.	Systemic lupus erythematosus	487 Thai cases, 1,606 Thai controls	405 Thai cases, 1,590 Thai controls	6p21.33	SFTA2	rs3095152-A	0.03	6E-7		2.4584	[NR]	Illumina [421909] (imputed)	N
601	chr6_dbb_hap3	2194203	2194204	rs2253705	35215271	Almandil NB	2022-01-27	Pharmaceuticals (Basel)	Integration of Transcriptome and Exome Genotyping Identifies Significant Variants with Autism Spectrum Disorder.	Autism spectrum disorder	70 Arab ancestry cases, 132 Arab ancestry controls	NA	6p21.33	NA	rs2253705-A	0.125	4E-6		3.706	[2.086-6.583]	Illumina [243345]	N
601	chr6_dbb_hap3	2194537	2194538	rs2253718	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	Y_RNA	rs2253718-T	NR	3E-11		0.019062	[0.013-0.025] unit decrease	Affymetrix [319769] (imputed)	N
601	chr6_dbb_hap3	2194537	2194538	rs2253718	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	Y_RNA	rs2253718-T	NR	8E-10		0.0195334	[0.013-0.026] unit decrease	Affymetrix [323858] (imputed)	N
601	chr6_dbb_hap3	2194537	2194538	rs2253718	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	Y_RNA	rs2253718-T	NR	3E-10		0.0180687	[0.012-0.024] unit decrease	Affymetrix [319769] (imputed)	N
601	chr6_dbb_hap3	2194537	2194538	rs2253718	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	Y_RNA	rs2253718-T	NR	3E-8		0.0176831	[0.011-0.024] unit decrease	Affymetrix [127266] (imputed)	N
601	chr6_dbb_hap3	2194537	2194538	rs2253718	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	Y_RNA	rs2253718-T	NR	5E-11		0.0204362	[0.014-0.027] unit increase	Affymetrix [323123] (imputed)	N
601	chr6_dbb_hap3	2194537	2194538	rs2253718	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	Y_RNA	rs2253718-T	NR	3E-11		0.0191888	[0.014-0.025] unit decrease	Affymetrix [321169] (imputed)	N
601	chr6_dbb_hap3	2197560	2197560	rs539017487	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	6p21.33	NR	rs539017487-GT	0.365568	4E-26		0.0391332	[0.033-0.045] unit increase	Affymetrix [16577424] (imputed)	N
601	chr6_dbb_hap3	2198386	2198387	rs2844649	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	Y_RNA	rs2844649-A	NR	1E-10		0.0311282	[0.022-0.041] unit increase	Affymetrix [323123] (imputed)	N
601	chr6_dbb_hap3	2198386	2198387	rs2844649	32589924	Bi W	2020-06-23	Am J Hum Genet	A Fast and Accurate Method for Genome-Wide Time-to-Event Data Analysis and Its Application to UK Biobank.	Asthma (time to event)	25,240 British ancestry cases, 257,631 British ancestry controls	NA	6p21.33	SFTA2, DPCR149	rs2844649-?	NR	4E-8				NR [~ 24000000] (imputed)	N
601	chr6_dbb_hap3	2199427	2199428	rs3132571	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs3132571-A	0.623	3E-58				Affymetrix [10369434] (imputed)	N
601	chr6_dbb_hap3	2203522	2203523	rs2243739	33602968	Skuladottir AT	2021-02-18	Sci Rep	A meta-analysis uncovers the first sequence variant conferring risk of Bell's palsy.	Bell's palsy	4,714 European ancestry cases, 1,011,520 European ancestry controls	NA	6p21.33	DPCR1	rs2243739-C	0.3504	5E-6		0.90366	NR	Affymetrix, Illumina [30341632] (imputed)	N
601	chr6_dbb_hap3	2207572	2207573	rs3132581	23453885	Smoller JW	2013-02-27	Lancet	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NA	6p21.33	NR	rs3132581-G		2E-7	(Modelling analysis)			NR [1252901] (imputed)	N
601	chr6_dbb_hap3	2208666	2208667	rs3130781	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	DPCR1, HCG21	rs3130781-C	NR	3E-10		0.0233694	[0.016-0.031] unit increase	Affymetrix [323123] (imputed)	N
601	chr6_dbb_hap3	2208865	2208866	rs2517451	33649182	Penova M	2021-03-01	Proc Natl Acad Sci U S A	Genome wide association study of HTLV-1-associated myelopathy/tropical spastic paraparesis in the Japanese population.	HTLV-1 associated myelopathy	731 Japanese ancestry cases, 846 Japanese ancestry controls	NA	6p21.33		rs2517451-C	0.04	2E-9		2.69	[1.95-3.71]	Illumina [126394]	N
601	chr6_dbb_hap3	2213255	2213256	rs11969476	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	6p21.33	NR	rs11969476-?	NR	1E-10	(MIC-A)	1.10404	[0.77-1.44] unit increase	Illumina [11901634] (imputed)	N
601	chr6_dbb_hap3	2214238	2214239	rs3132580	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p21.33	DPCR1	rs3132580-A		3E-34		0.037	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
601	chr6_dbb_hap3	2214238	2214239	rs3132580	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	6p21.33	DPCR1	rs3132580-G	NR	2E-7		0.149993	[0.094-0.206] unit increase	Illumina [at least 950000] (imputed)	N
601	chr6_dbb_hap3	2214238	2214239	rs3132580	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.33	DPCR1	rs3132580-T	0.1379	3E-40		2.74	[NR]	Illumina [242824]	N
601	chr6_dbb_hap3	2216645	2216646	rs116020851	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p21.33	HCG21	rs116020851-C	0.971	3E-7		0.182	[0.11-0.25] unit increase	Affymetrix, Illumina [7374092] (imputed)	N
601	chr6_dbb_hap3	2217640	2217641	rs17189763	28468790	Agopian AJ	2017-06-01	Circ Cardiovasc Genet	Genome-Wide Association Studies and Meta-Analyses for Congenital Heart Defects.	Conotruncal heart defects (maternal effects)	up to 838 European ancestry trios	NA	6p21.33	GTF2H4, VARS2	rs17189763-?	NR	8E-7		1.041635	[1.024871-1.058673]	Illumina [at least 4756722] (imputed)	N
601	chr6_dbb_hap3	2218042	2218043	rs9368648	33766035	Wakim V	2021-03-25	BMC Med Genomics	New susceptibility alleles associated with severe coronary artery stenosis in the Lebanese population.	Severe coronary stenosis (family history of CAD interaction)	1,734 Middle Eastern ancestry cases, 757 Middle Eastern ancestry controls	NA	6p21.33	intergenic	rs9368648-T	NR	1E-9				Illumina [NR]	N
601	chr6_dbb_hap3	2218042	2218043	rs9368648	33766035	Wakim V	2021-03-25	BMC Med Genomics	New susceptibility alleles associated with severe coronary artery stenosis in the Lebanese population.	Severe coronary stenosis	1,734 Middle Eastern ancestry cases, 757 Middle Eastern ancestry controls	NA	6p21.33	intergenic	rs9368648-T	NR	3E-9				Illumina [NR]	N
601	chr6_dbb_hap3	2220632	2220633	rs3095156	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA	6p21.33	NR	rs3095156-?	NR	7E-6		0.0497	[0.028-0.071] unit decrease	Illumina [at least 560000] (imputed)	N
601	chr6_dbb_hap3	2225955	2225956	rs3131934	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p21.33	NR	rs3131934-?	NR	6E-8		5.421	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
601	chr6_dbb_hap3	2226334	2226335	rs138678612	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	6p21.33	NR	rs138678612-G	0.0217	1E-8		1.1235955	[1.08-1.16]	Affymetrix, Illumina [NR] (imputed)	N
601	chr6_dbb_hap3	2227905	2227906	rs3095089	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCG21	rs3095089-T	NR	3E-13		0.0287765	[0.021-0.036] unit decrease	Affymetrix [323858] (imputed)	N
601	chr6_dbb_hap3	2227905	2227906	rs3095089	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HCG21	rs3095089-T	NR	4E-12		0.0272715	[0.02-0.035] unit decrease	Affymetrix [127266] (imputed)	N
601	chr6_dbb_hap3	2227905	2227906	rs3095089	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p21.33	NR	rs3095089-?	NR	8E-13		0.0835	[0.061-0.106] unit decrease	Illumina [at least 560000] (imputed)	N
601	chr6_dbb_hap3	2227975	2227976	rs3131933	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.33		rs3131933-T	0.474	5E-17				Affymetrix [10369434] (imputed)	N
601	chr6_dbb_hap3	2227975	2227976	rs3131933	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.33	NR	rs3131933-T	0.808	7E-9	(conditional)	0.891	[0.85-0.93]	Illumina [11270530] (imputed)	N
602	chr6_dbb_hap3	2230776	2230777	rs3095086	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCG21	rs3095086-A	NR	1E-10		0.0225432	[0.016-0.029] unit decrease	Affymetrix [323858] (imputed)	N
602	chr6_dbb_hap3	2230776	2230777	rs3095086	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HCG21	rs3095086-A	NR	6E-10		0.0216316	[0.015-0.028] unit decrease	Affymetrix [127266] (imputed)	N
602	chr6_dbb_hap3	2231845	2231846	rs3131781	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p21.33	NR	rs3131781-G	0.1445	9E-9		0.0097	[0.0064-0.013] unit decrease	NR [7666894] (imputed)	N
602	chr6_dbb_hap3	2232996	2232997	rs9368649	30626913	Amare AT	2019-01-09	Mol Psychiatry	Bivariate genome-wide association analyses of the broad depression phenotype combined with major depressive disorder, bipolar disorder or schizophrenia reveal eight novel genetic loci for depression.	Broad depression or major depressive disorder (self-reported)	9,240 European ancestry broad depression cases, 9,519 European ancestry broad depression controls, 51,258 European ancestry individuals, 75,607 European ancestry self-reported major depressive disorder cases, 231,747 European ancestry self-reported major depressive disorder controls	322,580 individuals	6p21.33	MUC21	rs9368649-A	0.14	1E-8				Affymetrix, Illumina [at least 918921] (imputed)	N
602	chr6_dbb_hap3	2232996	2232997	rs9368649	23284291	Hancock DB	2012-12-20	PLoS Genet	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (smoking interaction)	50,047 European ancestry individuals	NA	6p21.33	MUC21, DPCR1	rs9368649-A	NR	1E-7	(FEV1/FVC, Pack-years)			NR [~ 2500000] (imputed)	N
602	chr6_dbb_hap3	2232996	2232997	rs9368649	23284291	Hancock DB	2012-12-20	PLoS Genet	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (smoking interaction)	50,047 European ancestry individuals	NA	6p21.33	MUC21, DPCR1	rs9368649-A	NR	1E-7	(FEV1/FVC, Ever-smoking)			NR [~ 2500000] (imputed)	N
602	chr6_dbb_hap3	2234500	2234501	rs2530710	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs2530710-?		4E-7		1.0416667	[1.03-1.06]	Illumina [7645193] (imputed)	N
602	chr6_dbb_hap3	2234500	2234501	rs2530710	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs2530710-?		1E-7		1.5151515	[1.3-1.75]	Illumina [7645193] (imputed)	N
602	chr6_dbb_hap3	2239738	2239739	rs34853064	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.33	NR	rs34853064-?	NR	6E-9				Affymetrix [~ 8270000] (imputed)	N
602	chr6_dbb_hap3	2241622	2241623	rs3094084	25827949	Kunz M	2015-05-04	Exp Dermatol	Genome-wide association study identifies new susceptibility loci for cutaneous lupus erythematosus.	Cutaneous lupus erythematosus	151 European ancestry cases, 1,288 European ancestry controls	219 European ancestry cases, 262 European ancestry controls	6p21.33	MUC21, TRIM39, RPP21	rs3094084-T	0.154	2E-11		2.3	[1.76-3.01]	Affymetrix [906600]	N
602	chr6_dbb_hap3	2244160	2244161	rs2844678	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	683 Turkish ancestry cases, 1,721 Turkish ancestry controls	NA	6p21.33	MUC21	rs2844678-?	NR	2E-42				Illumina [4495750] (imputed)	N
602	chr6_dbb_hap3	2244160	2244161	rs2844678	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	286 European ancestry cases, 2,652 European ancestry controls, 76 Han Chinese ancestry cases, 889 Han Chinese ancestry controls, 46 South Asian ancestry cases, 501 South Asian ancestry controls, 683 Turkish ancestry cases, 1,721 Turkish ancestry controls	NA	6p21.33	MUC21	rs2844678-?	NR	6E-47		2.71	NR	Illumina [up to 4495750] (imputed)	N
602	chr6_dbb_hap3	2249232	2249233	rs9262397	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Unilateral cleft lip and palate	205 Asian ancestry cases, 315 European ancestry cases, 692 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	6p21.33	NR	rs9262397-?	NR	1E-6		1.75	[1.6-1.91]	Illumina [539000] (imputed)	N
602	chr6_dbb_hap3	2253106	2253107	rs13211972	32276964	Shete S	2020-04-10	Cancer Res	A genome-wide association study identifies two novel susceptible regions for squamous cell carcinoma of the head and neck.	Oropharynx cancer	1,144 European ancestry cases, 4,493 European ancestry controls	2,328 European ancestry cases, 3,232 European ancestry controls	6p21.33	MUC21	rs13211972-A	0.05	1E-10		1.55	[1.36-1.77]	Illumina [7858089] (imputed)	N
602	chr6_dbb_hap3	2255051	2255052	rs150184132	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs150184132-C	0.961	1E-9				Affymetrix [10369434] (imputed)	N
602	chr6_dbb_hap3	2263113	2263114	rs1632862	26379185	Garcia-Etxebarria K	2015-09-17	PLoS One	No Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity.	Severe influenza A (H1N1) infection	49 European ancestry severe cases, 549 European ancestry population controls	NA	6p21.33	MUC21, MUC22	rs1632862-?	0.009311	2E-14		15.2	[6.123-37.73]	Affymetrix [547296]	N
602	chr6_dbb_hap3	2263295	2263296	rs9262437	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	683 Turkish ancestry cases, 1,721 Turkish ancestry controls	NA	6p21.33	MUC22	rs9262437-?	NR	5E-31	(conditional on rs2844678)			Illumina [4495750] (imputed)	N
602	chr6_dbb_hap3	2264048	2264049	rs6920820	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p21.33		rs6920820-?	NR	2E-9		0.0557301	[0.037-0.074] unit increase	Affymetrix [20259828] (imputed)	N
602	chr6_dbb_hap3	2266975	2266976	rs1634718	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	MUC22, MUC21	rs1634718-G	0.2540161	7E-11	(EA, Complement C4)	0.3291	[0.23-0.43] unit decrease	Affymetrix [509946]	N
602	chr6_dbb_hap3	2267275	2267276	rs1634719	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs1634719-A	0.697	1E-33				Affymetrix [10369434] (imputed)	N
602	chr6_dbb_hap3	2270329	2270330	rs28360974	23551011	Zhao L	2013-04-02	Ann Hum Genet	Genome-wide association study of pre-eclampsia detects novel maternal single nucleotide polymorphisms and copy-number variants in subsets of the Hyperglycemia and Adverse Pregnancy Outcome (HAPO) study cohort.	Preeclampsia	21 Afro-Caribbean cases, 1,010 Afro-Caribbean controls, 50 European ancestry cases, 1,202 European ancestry controls, 62 Hispanic cases, 658 Hispanic controls	NA	6p21.33	MUC21	rs28360974-?	NR	3E-6	(Afro-Caribbean)	10.13	[3.85-26.67]	Illumina [2485249] (imputed)	N
602	chr6_dbb_hap3	2270460	2270461	rs149405105	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MUC22	rs149405105-A	NR	2E-8		0.0337227	[0.022-0.045] unit increase	Affymetrix [319769] (imputed)	N
602	chr6_dbb_hap3	2270460	2270461	rs149405105	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	MUC22	rs149405105-A	NR	1E-8		0.0343316	[0.023-0.046] unit increase	Affymetrix [319769] (imputed)	N
602	chr6_dbb_hap3	2270460	2270461	rs149405105	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.33	MUC22	rs149405105-A	NR	3E-10		0.0380088	[0.026-0.05] unit increase	Affymetrix [321114] (imputed)	N
602	chr6_dbb_hap3	2270460	2270461	rs149405105	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	MUC22	rs149405105-A	NR	2E-9		0.0364062	[0.025-0.048] unit increase	Affymetrix [321169] (imputed)	N
602	chr6_dbb_hap3	2276199	2276201	rs71757905	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Chickenpox	107,769 European ancestry cases, 15,982 European ancestry controls	NA	6p21.33	NR	rs71757905-?	NR	9E-6		0.1098	[0.062-0.158] unit increase	Illumina [at least 560000] (imputed)	N
602	chr6_dbb_hap3	2276918	2276919	rs9394026	29031612	Hirata J	2017-10-12	J Invest Dermatol	Variants at HLA-A, HLA-C, and HLA-DQB1 Confer Risk of Psoriasis Vulgaris in Japanese.	Psoriasis vulgaris	282 Japanese ancestry cases, 426 Japanese ancestry controls	320 Japanese ancestry cases, 1,622 Japanese ancestry controls	6p21.33	HLA	rs9394026-G	0.197	7E-15		1.86	[1.59-2.18]	Illumina [6369185] (imputed)	N
602	chr6_dbb_hap3	2278842	2278843	rs3869097	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.33		rs3869097-T	0.32183300000000004	2E-7		1.0237832	[1.01-1.03]	Affymetrix, Illumina [9851866] (imputed)	N
602	chr6_dbb_hap3	2280202	2280203	rs1634726	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental longevity (mother's age at death)	52,776 middle-aged British individuals	NA	6p21.33	NR	rs1634726-?	NR	6E-6		0.032105	[0.018-0.046] unit increase	Affymetrix [9658292] (imputed)	N
602	chr6_dbb_hap3	2282367	2282368	rs1632870	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MUC22	rs1632870-T	NR	5E-8		0.0227309	[0.015-0.031] unit increase	Affymetrix [323123] (imputed)	N
602	chr6_dbb_hap3	2283411	2283412	rs139141104	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 142,336 Japanese ancestry controls	NA	6p21.33	MUC22	rs139141104-?	NR	1E-18		0.16637	[0.13-0.2] unit increase	Illumina [19707525] (imputed)	N
602	chr6_dbb_hap3	2284082	2284083	rs114115115	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.33		rs114115115-T	0.937	4E-16				Affymetrix [10369434] (imputed)	N
602	chr6_dbb_hap3	2284082	2284083	rs114115115	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cervical cancer	6,563 European ancestry cases, 410,350 European ancestry controls	NA	6p21.33		rs114115115-T	NR	6E-13		1.3463	NR	Affymetrix [7846216] (imputed)	N
602	chr6_dbb_hap3	2284409	2284410	rs9380210	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.33		rs9380210-A	0.72	1E-24				Affymetrix [10369434] (imputed)	N
602	chr6_dbb_hap3	2284409	2284410	rs9380210	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.33		rs9380210-A	0.72	7E-16				Affymetrix [10369434] (imputed)	N
602	chr6_dbb_hap3	2284409	2284410	rs9380210	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p21.33		rs9380210-A	0.72	5E-18				Affymetrix [10369434] (imputed)	N
602	chr6_dbb_hap3	2284445	2284446	rs1634729	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	118,886 East Asian ancestry individuals	NA	6p21.33		rs1634729-C	0.950931	3E-9		0.0534033	[0.036-0.071] unit decrease	Illumina [13474352] (imputed)	N
602	chr6_dbb_hap3	2284445	2284446	rs1634729	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MUC22	rs1634729-T	NR	3E-9		0.0248876	[0.017-0.033] unit decrease	Affymetrix [319769] (imputed)	N
602	chr6_dbb_hap3	2284445	2284446	rs1634729	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	MUC22	rs1634729-T	NR	6E-9		0.0242344	[0.016-0.032] unit decrease	Affymetrix [319769] (imputed)	N
602	chr6_dbb_hap3	2284471	2284472	rs116071718	31066027	Nicoletti P	2019-05-07	Clin Pharmacol Ther	Shared genetic risk factors across carbamazepine-induced hypersensitivity reactions.	Carbamazepine-induced serious cutaneous adverse reaction	43 European ancestry cases, 10,701 European ancestry controls	NA	6p21.33	MUC22	rs116071718-?	NR	2E-6	(conditioned on rs192543598)	3.99	[2.25-7.05]	Illumina [5271349] (imputed)	N
602	chr6_dbb_hap3	2285166	2285167	rs9394030	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	MUC22	rs9394030-A	NR	7E-9		0.0193287	[0.013-0.026] unit increase	Affymetrix [321169] (imputed)	N
602	chr6_dbb_hap3	2287144	2287145	rs1632865	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.33		rs1632865-T	0.584	6E-30				Affymetrix [10369434] (imputed)	N
602	chr6_dbb_hap3	2287919	2287920	rs2517554	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.33		rs2517554-C	0.386	7E-33				Affymetrix [10369434] (imputed)	N
602	chr6_dbb_hap3	2288233	2288234	rs62399429	33531474	Burton CL	2021-02-02	Transl Psychiatry	Genome-wide association study of pediatric obsessive-compulsive traits: shared genetic risk between traits and disorder.	Obsessive-compulsive traits	5,018 European ancestry children and adolescents	NA	6p21.33	MUC22	rs62399429-?	NR	5E-6		0.131	[0.074-0.188] unit increase	Illumina [7870334] (imputed)	N
602	chr6_dbb_hap3	2289309	2289310	rs566731348	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.33	NR	rs566731348-A	0.951	4E-12		1.889	[1.71-2.07]	Illumina [11270530] (imputed)	N
602	chr6_dbb_hap3	2292142	2292143	rs9262549	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MUC22	rs9262549-G	NR	2E-14		0.0228763	[0.017-0.029] unit increase	Affymetrix [321016] (imputed)	N
602	chr6_dbb_hap3	2292142	2292143	rs9262549	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MUC22	rs9262549-G	NR	4E-18		0.0282059	[0.022-0.035] unit increase	Affymetrix [323123] (imputed)	N
602	chr6_dbb_hap3	2292765	2292766	rs12110481	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MUC22	rs12110481-T	NR	2E-14		0.0246712	[0.018-0.031] unit decrease	Affymetrix [323123] (imputed)	N
602	chr6_dbb_hap3	2295874	2295875	rs3909113	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Sutterella)	1,068 Japanese ancestry individuals	NA	6p21.33	MUC22	rs3909113-G	0.29	3E-6		0.03	[0.017-0.043] unit decrease	Illumina [6380737] (imputed)	N
602	chr6_dbb_hap3	2295949	2295950	rs10947124	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	MUC22	rs10947124-T	NR	2E-9		0.0181143	[0.012-0.024] unit increase	Affymetrix [321169] (imputed)	N
602	chr6_dbb_hap3	2296132	2296133	rs59356242	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LRPAP1	5,365 Icelandic ancestry individuals	NA	6p21.33		rs59356242-A	0.0137	2E-11		0.546071	[0.39-0.7] unit increase	Illumina [7506463] (imputed)	N
602	chr6_dbb_hap3	2296466	2296467	rs6933349	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6p21.33		rs6933349-?	NR	1E-8		0.926525	[0.9-0.95]	NR [685523]	N
602	chr6_dbb_hap3	2296554	2296555	rs7768644	26151496	Chen PL	2015-07-07	Nat Commun	Genetic determinants of antithyroid drug-induced agranulocytosis by human leukocyte antigen genotyping and genome-wide association study.	Thionamide-induced agranulocytosis in Graves' disease	21 East Asian ancestry cases with agranulocytosis, 662 East Asian ancestry cases without agranulocytosis	21 East Asian ancestry cases with agranulocytosis, 546 East Asian ancestry cases without agranulocytosis	6p21.33	HLA	rs7768644-A	0.091	3E-13	(trend)	5.01	[3.1-8.1] (allelic)	Affymetrix [522980]	N
602	chr6_dbb_hap3	2296796	2296797	rs28732081	30037793	Haapasalo K	2018-09-21	Infect Immun	The Psoriasis Risk Allele <i>HLA-C*06:02</i> Shows Evidence of Association with Chronic or Recurrent Streptococcal Tonsillitis.	Tonsillitis	95 Finnish cases, 504 Finnish controls	NA	6p21.33	HLA-C, HLA-B	rs28732081-?		6E-6		4.7		Illumina [100000]	N
602	chr6_dbb_hap3	2296905	2296906	rs3869098	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs3869098-A	0.528	2E-32				Affymetrix [10369434] (imputed)	N
602	chr6_dbb_hap3	2296905	2296906	rs3869098	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MUC22	rs3869098-G	NR	6E-19		0.0251596	[0.02-0.031] unit increase	Affymetrix [319769] (imputed)	N
602	chr6_dbb_hap3	2296905	2296906	rs3869098	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MUC22	rs3869098-G	NR	4E-11		0.0207579	[0.015-0.027] unit increase	Affymetrix [323858] (imputed)	N
602	chr6_dbb_hap3	2296905	2296906	rs3869098	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	MUC22	rs3869098-G	NR	6E-18		0.0244083	[0.019-0.03] unit increase	Affymetrix [319769] (imputed)	N
602	chr6_dbb_hap3	2296905	2296906	rs3869098	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	MUC22	rs3869098-G	NR	6E-10		0.0194883	[0.013-0.026] unit increase	Affymetrix [127266] (imputed)	N
602	chr6_dbb_hap3	2296905	2296906	rs3869098	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MUC22	rs3869098-G	NR	1E-13		0.0208831	[0.015-0.026] unit decrease	Affymetrix [321016] (imputed)	N
602	chr6_dbb_hap3	2296905	2296906	rs3869098	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MUC22	rs3869098-G	NR	3E-16		0.0252592	[0.019-0.031] unit decrease	Affymetrix [323123] (imputed)	N
602	chr6_dbb_hap3	2296905	2296906	rs3869098	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	MUC22	rs3869098-G	NR	2E-15		0.0228249	[0.017-0.028] unit increase	Affymetrix [321169] (imputed)	N
602	chr6_dbb_hap3	2296980	2296981	rs4248153	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MUC22	rs4248153-G	NR	3E-11		0.0193381	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
602	chr6_dbb_hap3	2296980	2296981	rs4248153	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	MUC22	rs4248153-G	NR	2E-10		0.018489	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
602	chr6_dbb_hap3	2296980	2296981	rs4248153	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MUC22	rs4248153-G	NR	2E-15		0.0230515	[0.017-0.029] unit decrease	Affymetrix [321016] (imputed)	N
602	chr6_dbb_hap3	2297069	2297070	rs4248154	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.33		rs4248154-C	0.831	5E-19				Affymetrix [10369434] (imputed)	N
602	chr6_dbb_hap3	2297069	2297070	rs4248154	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Prostate cancer	10,792 European ancestry cases, 410,350 European ancestry controls	NA	6p21.33		rs4248154-T	NR	4E-8		1.1076651	NR	Affymetrix [7846216] (imputed)	N
602	chr6_dbb_hap3	2297069	2297070	rs4248154	21900946	Nakabayashi K	2011-09-08	J Hum Genet	Identification of independent risk loci for Graves' disease within the MHC in the Japanese population.	Graves' disease	1,119 Japanese ancestry cases, 2,718 Japanese ancestry controls	432 Japanese ancestry cases, 1,157 Japanese ancestry controls	6p21.33	MHC	rs4248154-C	0.54	1E-13		1.38	[1.27-1.50]	Perlegen [268068]	N
602	chr6_dbb_hap3	2297922	2297923	rs34416364	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6p21.33	NR	rs34416364-G	0.90442	8E-9		1.0608954	[1.04-1.08]	Affymetrix [15688218] (imputed)	N
602	chr6_dbb_hap3	2297922	2297923	rs34416364	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	6p21.33	NR	rs34416364-?	NR	4E-6		0.0711	[0.041-0.101] unit decrease	Illumina [at least 560000] (imputed)	N
602	chr6_dbb_hap3	2299885	2299886	rs11753208	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	MUC22	rs11753208-T	0.08492462	2E-13	(EA, MHC class I polypeptide-related sequence A)	0.5826	[0.43-0.74] unit decrease	Affymetrix [509946]	N
602	chr6_dbb_hap3	2299917	2299918	rs9262555	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	6p21.33	NR	rs9262555-?	NR	6E-13		7.194	NR z score decrease	Illumina [at least 830937] (imputed)	N
602	chr6_dbb_hap3	2299943	2299944	rs141397370	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LRPAP1	5,361 Icelandic ancestry individuals	NA	6p21.33		rs141397370-T	0.01079	3E-25		0.911048	[0.74-1.08] unit increase	Illumina [7506463] (imputed)	N
602	chr6_dbb_hap3	2300179	2300180	rs2844670	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MUC22	rs2844670-G	NR	2E-9		0.0247626	[0.017-0.033] unit increase	Affymetrix [323123] (imputed)	N
602	chr6_dbb_hap3	2301308	2301309	rs2844665	21801394	Genin E	2011-07-29	Orphanet J Rare Dis	Genome-wide association study of Stevens-Johnson Syndrome and Toxic Epidermal Necrolysis in Europe.	Drug-induced Stevens-Johnson syndrome or toxic epidermal necrolysis (SJS/TEN)	424 European ancestry cases, 1,881 European ancestry controls	NA	6p21.33	C6orf205	rs2844665-C	0.62	3E-7		1.54	[1.30-1.82]	Illumina [268914]	N
602	chr6_dbb_hap3	2301447	2301448	rs9262558	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Osteoporosis	8,520 European ancestry cases, 479,981 European ancestry controls, 9,794 East Asian ancestry cases, 168,932 East Asian ancestry controls	NA	6p21.33		rs9262558-T	NR	3E-8		0.1429	[0.092-0.194] unit decrease	Affymetrix, Illumina [25844994] (imputed)	N
602	chr6_dbb_hap3	2301577	2301578	rs115730672	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Treatment or medication use - insulin product (UKB data field 20003_1140883066)	4,469 European ancestry cases, 451,807 European ancestry controls	NA	6p21.33		rs115730672-C	0.005712	3E-11		1.05	[0.74-1.36] unit increase	NR [11842647] (imputed)	N
602	chr6_dbb_hap3	2307454	2307455	rs116353863	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	6p21.33	MHC	rs116353863-C	0.0165	9E-9		1.2	[1.13-1.27]	Affymetrix, Illumina [16900397] (imputed)	N
602	chr6_dbb_hap3	2309181	2309181	rs770655224	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.33	MUC22	rs770655224-G	0.8871	4E-7		0.0673	[0.041-0.093] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
602	chr6_dbb_hap3	2309200	2309201	rs12528596	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	6p21.33	Intergenic	rs12528596-T	NR	1E-7		0.0242361	[0.015-0.033] unit decrease	Illumina [13519193] (imputed)	N
602	chr6_dbb_hap3	2309454	2309455	rs10456389	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MUC22	rs10456389-T	NR	2E-9		0.0238148	[0.016-0.032] unit decrease	Affymetrix [321016] (imputed)	N
602	chr6_dbb_hap3	2310536	2310537	rs17190106	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)(bidirectional)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.33		rs17190106-G	NR	2E-10				Affymetrix [7846216] (imputed)	N
602	chr6_dbb_hap3	2313365	2313366	rs73727186	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	6p21.33	HCG22, MUC22, MUC21, C6orf15, PSORS1C1, CDSN, PSORS1C2, CCHCR1, DPCR1, TCF19, POU5F1, SFTA2, VARS2, PSORS1C3, GTF2H4, DDR1, HCG27, MIR4640	rs73727186-?		6E-6	(heterogeneous)	0.235	[0.13-0.34] unit increase	Illumina [1492601] (imputed)	N
602	chr6_dbb_hap3	2313365	2313366	rs73727186	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	6p21.33	HCG22, MUC22, MUC21, C6orf15, PSORS1C1, CDSN, PSORS1C2, CCHCR1, DPCR1, TCF19, POU5F1, SFTA2, VARS2, PSORS1C3, GTF2H4, DDR1, HCG27, MIR4640	rs73727186-?		5E-6	(dominant)	0.233	[-0.43732-0.90332] unit increase	Illumina [1492601] (imputed)	N
602	chr6_dbb_hap3	2314158	2314159	rs2251830	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	6p21.33	HCG22	rs2251830-A	0.36	5E-22		0.053	[0.041-0.065] unit increase	Affymetrix, Illumina [2704730] (imputed)	N
602	chr6_dbb_hap3	2315588	2315589	rs2517532	22493691	Eriksson N	2012-04-06	PLoS One	Novel associations for hypothyroidism include known autoimmune risk loci.	Hypothyroidism	3,736 European ancestry cases, 35,546 European ancestry controls	NA	6p21.33	HLA-C, LOC729792, HCG22, C6orf15, DHFRP2, HCP5, HLA-B	rs2517532-G	0.597	1E-8		1.16	[1.10-1.22]	Illumina [870065]	N
602	chr6_dbb_hap3	2315727	2315728	rs2523864	25813999	Jeong S	2015-04-01	Invest Ophthalmol Vis Sci	Identification of a Novel Mucin Gene HCG22 Associated With Steroid-Induced Ocular Hypertension.	Change in intraocular pressure in response to steroid treatment (triamcinolone acetonide)	64 European ancestry individuals	49 European ancestry individuals	6p21.33	HCG22, HLA-A, HLA-B, MUC22	rs2523864-T	0.412	5E-9				Illumina [1545328]	N
602	chr6_dbb_hap3	2317453	2317454	rs9262602	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p21.33	NR	rs9262602-G	0.132	2E-8	(IFNAR2_of_CD20p)			Illumina [5084123] (imputed)	N
602	chr6_dbb_hap3	2317710	2317711	rs77203474	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Antisaccade task score	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	6p21.33	HCG22	rs77203474-A	NR	3E-6		0.1378235	[0.079-0.197] unit decrease	Illumina [> 6200000] (imputed)	N
602	chr6_dbb_hap3	2318111	2318112	rs4713428	26584805	Dorajoo R	2015-11-19	Genes Nutr	A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.	Plasma omega-3 polyunsaturated fatty acid level (eicosapentaenoic acid)	717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls	NA	6p21.33	NR	rs4713428-G	0.294	7E-6		0.0854	[0.048-0.123] unit decrease	Illumina [up to 1980188] (imputed)	N
602	chr6_dbb_hap3	2319336	2319337	rs2523855	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCG22	rs2523855-C	NR	2E-10		0.0207136	[0.014-0.027] unit decrease	Affymetrix [323123] (imputed)	N
602	chr6_dbb_hap3	2320006	2320007	rs2905757	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCG22	rs2905757-T	NR	5E-12		0.0207441	[0.015-0.027] unit increase	Affymetrix [319769] (imputed)	N
602	chr6_dbb_hap3	2320006	2320007	rs2905757	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HCG22	rs2905757-T	NR	3E-11		0.0199898	[0.014-0.026] unit increase	Affymetrix [319769] (imputed)	N
602	chr6_dbb_hap3	2320006	2320007	rs2905757	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCG22	rs2905757-T	NR	3E-8		0.0166947	[0.011-0.023] unit decrease	Affymetrix [321016] (imputed)	N
602	chr6_dbb_hap3	2321780	2321781	rs9262631	26151496	Chen PL	2015-07-07	Nat Commun	Genetic determinants of antithyroid drug-induced agranulocytosis by human leukocyte antigen genotyping and genome-wide association study.	Thionamide-induced agranulocytosis in Graves' disease	21 East Asian ancestry cases with agranulocytosis, 662 East Asian ancestry cases without agranulocytosis	21 East Asian ancestry cases with agranulocytosis, 546 East Asian ancestry cases without agranulocytosis	6p21.33	HLA	rs9262631-A	0.063	6E-19	(trend)	7.09	[4.32-11.63] (allelic)	Affymetrix [522980]	N
602	chr6_dbb_hap3	2321987	2321988	rs9262632	21051598	Pereyra F	2010-11-04	Science	The major genetic determinants of HIV-1 control affect HLA class I peptide presentation.	HIV-1 control	516 European cases, 1,196 European controls, 341 African American cases, 892 African American controls, 117 Hispanic cases, 560 Hispanic controls	NA	6p21.33	intergenic	rs9262632-G	0.10	1E-8	(AA)	3.1	[NR]	Illumina [1384048] (imputed)	N
602	chr6_dbb_hap3	2323415	2323416	rs76541615	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	6p21.33	MHC-region	rs76541615-T	0.796	1E-17		1.08	[1.06-1.09]	Affymetrix, Illumina [11800000] (imputed)	N
602	chr6_dbb_hap3	2324515	2324516	rs2517521	32589924	Bi W	2020-06-23	Am J Hum Genet	A Fast and Accurate Method for Genome-Wide Time-to-Event Data Analysis and Its Application to UK Biobank.	Hyperlipidemia (time to event)	35,623 British ancestry cases, 247,248 British ancestry controls	NA	6p21.33	HCG22	rs2517521-?	NR	3E-8				NR [~ 24000000] (imputed)	N
602	chr6_dbb_hap3	2324515	2324516	rs2517521	32589924	Bi W	2020-06-23	Am J Hum Genet	A Fast and Accurate Method for Genome-Wide Time-to-Event Data Analysis and Its Application to UK Biobank.	Essential hypertension (time to event)	76,566 British ancestry cases, 206,305 British ancestry controls	NA	6p21.33	HCG2248	rs2517521-?	NR	4E-8				NR [~ 24000000] (imputed)	N
602	chr6_dbb_hap3	2324748	2324749	rs78725346	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.33	NR	rs78725346-A	0.01045	3E-8	(CKB)	0.03173	NR unit increase	Illumina [1671387] (imputed)	N
602	chr6_dbb_hap3	2326461	2326462	rs2523842	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCG22	rs2523842-A	NR	2E-9		0.0493584	[0.033-0.066] unit decrease	Affymetrix [321016] (imputed)	N
602	chr6_dbb_hap3	2326634	2326635	rs9262651	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HCG22	rs9262651-T	NR	3E-11		0.0220473	[0.016-0.029] unit increase	Affymetrix [321169] (imputed)	N
602	chr6_dbb_hap3	2327301	2327302	rs2517510	21738480	Nalls MA	2011-07-01	PLoS Genet	Multiple loci are associated with white blood cell phenotypes.	White blood cell count	19,509 European ancestry individuals	11,823 European ancestry individuals	6p21.33	PSORS1C1, MUC21, HCG22, C6orf15, CCHCR1, CDSN, PSORS1C2	rs2517510-T		4E-13	(WBC)	0.0129	[0.0094-0.0164] unit decrease	Affymetrix, Illumina [> 2400000] (imputed)	N
602	chr6_dbb_hap3	2330822	2330823	rs149917912	33841421	Li J	2021-03-25	Front Immunol	Variants at the MHC Region Associate With Susceptibility to <i>Clostridioides difficile</i> Infection: A Genome-Wide Association Study Using Comprehensive Electronic Health Records.	Clostridioides difficle infection	1,160 European ancestry cases, 14,144 European ancestry controls	NA	6p21.33	NR	rs149917912-C	0.0242	5E-6		1.67	[1.37-2]	Illumina [64973696] (imputed)	N
602	chr6_dbb_hap3	2331510	2331511	rs75056122	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.33	NR	rs75056122-T	0.01045	3E-8	(CKB)	0.03173	NR unit increase	Illumina [1671387] (imputed)	N
602	chr6_dbb_hap3	2331774	2331775	rs3094089	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCG22	rs3094089-C	NR	1E-9		0.021023	[0.014-0.028] unit decrease	Affymetrix [323858] (imputed)	N
602	chr6_dbb_hap3	2331774	2331775	rs3094089	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HCG22	rs3094089-C	NR	7E-9		0.0200851	[0.013-0.027] unit decrease	Affymetrix [127266] (imputed)	N
602	chr6_dbb_hap3	2332370	2332371	rs3132567	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HCG22	rs3132567-T	NR	3E-8		0.0202317	[0.013-0.027] unit decrease	Affymetrix [319769] (imputed)	N
602	chr6_dbb_hap3	2332731	2332732	rs192064582	32141793	Garman L	2020-03-06	Ocul Immunol Inflamm	Genome-Wide Association Study of Ocular Sarcoidosis Confirms HLA Associations and Implicates Barrier Function and Autoimmunity in African Americans.	Ocular sarcoidosis	260 African American cases, 1,551 African American controls	NA	6p21.33	NR	rs192064582-T	NR	8E-6		1.747	[1.37-2.23]	Illumina [13976150] (imputed)	N
602	chr6_dbb_hap3	2332751	2332752	rs184099286	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	QRS duration	3,274 African American individuals, 13,420 Hispanic/Latino individuals, 126 Asian ancestry individuals, 226 Native American ancestry individuals	NA	6p21.33	HCG22	rs184099286-?	NR	5E-9	(Hispanic/Latino)	1.17582	[0.78-1.57] unit decrease	Illumina [26566045] (imputed)	N
602	chr6_dbb_hap3	2337835	2337835	rs145214406	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.33	NR	rs145214406-CAA	0.012	1E-12		0.593265	[0.43-0.76] unit increase	Affymetrix [up to 8900000] (imputed)	N
602	chr6_dbb_hap3	2341110	2341111	rs2517481	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Growth differentiation factor-15 levels	21,758 European ancestry individuals	9,173 individuals	6p21.33		rs2517481-C	0.41	3E-9		0.0481	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
602	chr6_dbb_hap3	2343673	2343674	rs2517474	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small LDL	115,082 European ancestry individuals	NA	6p21.33		rs2517474-G	0.542926	2E-8		0.023198	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
602	chr6_dbb_hap3	2343673	2343674	rs2517474	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium LDL	115,082 European ancestry individuals	NA	6p21.33		rs2517474-G	0.542926	1E-9		0.0250618	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
602	chr6_dbb_hap3	2343673	2343674	rs2517474	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium LDL	115,082 European ancestry individuals	NA	6p21.33		rs2517474-G	0.542926	7E-9		0.0240182	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
602	chr6_dbb_hap3	2343673	2343674	rs2517474	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small LDL	115,082 European ancestry individuals	NA	6p21.33		rs2517474-G	0.542926	3E-8		0.0228734	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
602	chr6_dbb_hap3	2343673	2343674	rs2517474	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	6p21.33		rs2517474-G	0.542926	2E-9		0.0247017	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
602	chr6_dbb_hap3	2343673	2343674	rs2517474	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	RNU6-1133P	rs2517474-A	NR	8E-10		0.0173534	[0.012-0.023] unit increase	Affymetrix [319769] (imputed)	N
602	chr6_dbb_hap3	2343673	2343674	rs2517474	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	RNU6-1133P	rs2517474-A	NR	9E-9		0.0162462	[0.011-0.022] unit increase	Affymetrix [319769] (imputed)	N
602	chr6_dbb_hap3	2343673	2343674	rs2517474	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	RNU6-1133P	rs2517474-A	NR	7E-9		0.0163369	[0.011-0.022] unit decrease	Affymetrix [321016] (imputed)	N
602	chr6_dbb_hap3	2343673	2343674	rs2517474	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	RNU6-1133P	rs2517474-A	NR	3E-9		0.0169233	[0.011-0.023] unit increase	Affymetrix [321169] (imputed)	N
602	chr6_dbb_hap3	2345394	2345395	rs373537558	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	6p21.33	RNU6-1133P	rs373537558-A	0.9873	1E-12		0.0855	[0.062-0.109] unit increase	Affymetrix [18391927] (imputed)	N
602	chr6_dbb_hap3	2347526	2347527	rs9263475	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4 on CD39+ secreting CD4 regulatory T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs9263475-G	0.51353	1E-12		0.2076	[0.15-0.26] unit increase	Illumina [17954496] (imputed)	N
602	chr6_dbb_hap3	2347526	2347527	rs9263475	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.33	Intergenic	rs9263475-G	NR	6E-9	(women)	0.0308596	[0.02-0.041] unit decrease	Illumina [13520550] (imputed)	N
602	chr6_dbb_hap3	2347526	2347527	rs9263475	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.33	Intergenic	rs9263475-G	NR	2E-9		0.0221293	[0.015-0.029] unit decrease	Illumina [13520550] (imputed)	N
602	chr6_dbb_hap3	2349810	2349811	rs28732092	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p21.33	NR	rs28732092-T	0.0787	5E-7		0.011	[0.0067-0.0153] unit increase	NR [7666894] (imputed)	N
602	chr6_dbb_hap3	2350919	2350920	rs2535307	28132517	Xie W	2017-01-28	AIDS Res Hum Retroviruses	Genome-Wide Analyses Reveal Gene Influence on HIV Disease Progression and HIV-1C Acquisition in Southern Africa.	HIV progression (CD4 and viral load)	556 Motswana ancestry cases	NA	6p21.33	HCG22	rs2535307-C	0.48	4E-7				Illumina [NR]	N
602	chr6_dbb_hap3	2351559	2351560	rs2535305	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	RNU6-1133P	rs2535305-G	NR	8E-10		0.0178493	[0.012-0.024] unit increase	Affymetrix [321169] (imputed)	N
602	chr6_dbb_hap3	2352196	2352197	rs12527394	29534301	Nishida N	2018-03-13	Hepatology	Key HLA-DRB1-DQB1 haplotypes and role of the BTNL2 gene for response to a hepatitis B vaccine.	Response to hepatitis B vaccine	107 Japanese ancestry low responder individuals, 351 Japanese ancestry intermediate responder individuals, 735 Japanese ancestry high responder individuals	NA	6p21.33	C6orf15	rs12527394-?		5E-8		0.174	unit decrease	Affymetrix [427664]	N
602	chr6_dbb_hap3	2355358	2355359	rs4947296	31050781	Zhao SX	2019-05-03	JAMA Netw Open	Assessment of Molecular Subtypes in Thyrotoxic Periodic Paralysis and Graves Disease Among Chinese Han Adults: A Population-Based Genome-Wide Association Study.	Thyrotoxic hypokalemic periodic paralysis and Graves disease	171 Han Chinese ancestry cases, 2,160 Han Chinese ancestry controls	362 Han Chinese ancestry cases, 1,089 Han Chinese ancestry controls	6p21.33	C6orf15	rs4947296-?	0.14	3E-22		2.06	[1.77-2.39]	Illumina [2752055] (imputed)	N
602	chr6_dbb_hap3	2355358	2355359	rs4947296	23001997	Hou S	2012-12-06	Arthritis Rheum	Identification of a susceptibility locus in STAT4 for Behcet's disease in Han Chinese in a genome-wide association study.	Behcet's disease	147 Han Chinese ancestry cases, 951 Han Chinese ancestry controls	554 Han Chinese ancestry cases, 1,159 Han Chinese ancestry controls	6p21.33	HCG22	rs4947296-?	NR	1E-11		2.57	[1.96-3.37]	Affymetrix [661736]	N
602	chr6_dbb_hap3	2355358	2355359	rs4947296	21841780	Chu X	2011-08-14	Nat Genet	A genome-wide association study identifies two new risk loci for Graves' disease.	Graves' disease	1,468 Chinese ancestry cases, 1,490 Chinese ancestry controls	3,994 Chinese ancestry cases, 3,510 Chinese ancestry controls	6p21.33	MUC21, C6orf15	rs4947296-C	0.14	4E-51		1.77	[1.65-1.91]	Illumina [486049]	N
602	chr6_dbb_hap3	2355520	2355521	rs3130544	23263863	Li J	2012-12-20	Hum Mol Genet	GWAS of blood cell traits identifies novel associated loci and epistatic interactions in Caucasian and African-American children.	Hematology traits	7,943 African American children, 6,234 European ancestry children	NA	6p21.33	PSORS1C1, MUC21, HCG22, C6orf15, CCHCR1, CDSN, PSORS1C2	rs3130544-A	NR	5E-7	(WBC)	0.0189	[0.011-0.026] unit decrease	Illumina [544917]	N
602	chr6_dbb_hap3	2355520	2355521	rs3130544	23055271	Gregersen PK	2012-07-16	Ann Neurol	Risk for myasthenia gravis maps to a (151) Pro->Ala change in TNIP1 and to human leukocyte antigen-B*08.	Myasthenia gravis	400 European ancestry cases, 5,505 European ancestry controls	249 European ancestry cases, 3,415 European ancestry controls	6p21.33	NR	rs3130544-A	0.13	2E-90		5.64	[4.77-6.67]	Illumina [274256]	N
602	chr6_dbb_hap3	2355520	2355521	rs3130544	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.33	intergenic	rs3130544-A	0.1238	9E-58		3.34	[NR]	Illumina [242824]	N
602	chr6_dbb_hap3	2356642	2356643	rs2535298	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p21.33	NR	rs2535298-?	NR	1E-6		0.0761	[0.046-0.107] unit increase	Illumina [at least 560000] (imputed)	N
602	chr6_dbb_hap3	2357399	2357400	rs2535296	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p21.33	NR	rs2535296-?	NR	3E-12		0.0858	[0.062-0.11] unit decrease	Illumina [at least 560000] (imputed)	N
602	chr6_dbb_hap3	2358739	2358740	rs3094087	33227023	Wang Y	2020-11-23	PLoS Genet	Genome-wide association study identifies 16 genomic regions associated with circulating cytokines at birth.	IgA levels	8,318 European ancestry individuals	NA	6p21.33	HLA	rs3094087-T	0.15	2E-10		0.1	[0.080-0.120] unit increase	Illumina [~ 9000000] (imputed)	N
603	chr6_dbb_hap3	2360591	2360592	rs3130967	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	RNU6-1133P	rs3130967-T	NR	2E-9		0.0334393	[0.023-0.044] unit increase	Affymetrix [323123] (imputed)	N
603	chr6_dbb_hap3	2362215	2362216	rs146508039	33841421	Li J	2021-03-25	Front Immunol	Variants at the MHC Region Associate With Susceptibility to <i>Clostridioides difficile</i> Infection: A Genome-Wide Association Study Using Comprehensive Electronic Health Records.	Clostridioides difficle infection in antibiotics-users	587 European ancestry cases, 3,166 European ancestry controls	NA	6p21.33	NR	rs146508039-T	0.025	5E-7		2.24	[1.7-2.88]	Illumina [64973696] (imputed)	N
603	chr6_dbb_hap3	2362249	2362250	rs3130968	34601942	van Zuydam NR	2021-10-04	Circ Genom Precis Med	Genome-Wide Association Study of Peripheral Artery Disease.	Peripheral artery disease	12,086 European ancestry cases, 449,548 European ancestry controls	31,307 cases, 211,753 controls, 3,164 East Asian ancestry cases, 20,134 East Asian ancestry controls	6p21.33		rs3130968-T	0.19	3E-12		1.07	[1.05-1.09]	Affymetrix, Illumina [NR] (imputed)	N
603	chr6_dbb_hap3	2362249	2362250	rs3130968	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	C6orf15	rs3130968-T	NR	4E-9		0.0219861	[0.015-0.029] unit decrease	Affymetrix [319769] (imputed)	N
603	chr6_dbb_hap3	2362249	2362250	rs3130968	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	C6orf15	rs3130968-T	NR	4E-8		0.0204516	[0.013-0.028] unit decrease	Affymetrix [319769] (imputed)	N
603	chr6_dbb_hap3	2362249	2362250	rs3130968	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	C6orf15	rs3130968-T	NR	7E-9		0.0218317	[0.014-0.029] unit decrease	Affymetrix [321169] (imputed)	N
603	chr6_dbb_hap3	2362249	2362250	rs3130968	31285632	Klarin D	2019-07-08	Nat Med	Genome-wide association study of peripheral artery disease in the Million Veteran Program.	Peripheral artery disease	24,009 European ancestry cases, 150,983 European ancestry controls, 5,373 African ancestry cases, 42,485 African ancestry controls, 1,925 Hispanic cases, 18,285 Hispanic controls	5,117 European ancestry cases, 389,291 European ancestry controls	6p21.33	HLA-B	rs3130968-T	0.1371	3E-10		1.07	[1.05-1.10]	Affymetrix [at least 20323458] (imputed)	N
603	chr6_dbb_hap3	2362295	2362296	rs149396823	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	6p21.33		rs149396823-A	0.00992199999999999	1E-11		0.07646505	[0.054-0.099] unit increase	Affymetrix [93095623] (imputed)	N
603	chr6_dbb_hap3	2363804	2363805	rs144846110	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p21.33	C6orf15	rs144846110-G	NR	1E-10		0.0272233	[0.019-0.036] unit decrease	Affymetrix [323858] (imputed)	N
603	chr6_dbb_hap3	2364435	2364436	rs9263523	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Prostate cancer	11,599 European ancestry cases, 199,628 European ancestry controls, 5,672 East Asian ancestry cases, 84,660 East Asian ancestry controls	NA	6p21.33		rs9263523-T	NR	1E-10		0.0949	[0.066-0.124] unit decrease	Affymetrix, Illumina [25775424] (imputed)	N
603	chr6_dbb_hap3	2364721	2364722	rs4371876	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4 on HLA DR+ CD4+ T cell	3,060 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs4371876-A	0.51058	2E-10		0.1831	[0.13-0.24] unit increase	Illumina [18012714] (imputed)	N
603	chr6_dbb_hap3	2365164	2365164	rs200788140	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4 on activated CD4 regulatory T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs200788140-AT	0.35258	7E-11		0.2109	[0.15-0.27] unit increase	Illumina [17954496] (imputed)	N
603	chr6_dbb_hap3	2365164	2365164	rs200788140	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4 on CD39+ activated CD4 regulatory T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs200788140-AT	0.35258	8E-15		0.2502	[0.19-0.31] unit increase	Illumina [17954496] (imputed)	N
603	chr6_dbb_hap3	2366698	2366699	rs9263567	21844884	Wheeler HE	2011-08-16	Pharmacogenomics J	Genome-wide meta-analysis identifies variants associated with platinating agent susceptibility across populations.	Response to platinum-based chemotherapy (cisplatin)	176 Sub-Saharan African ancestry lymphoblastoid cell lines, 83 African ancestry lymphoblastoid cell lines, 175 East Asian ancestry lymphoblastoid cell lines, 174 European ancestry lymphoblastoid cell lines	NA	6p21.33	intergenic	rs9263567-?		5E-6				NR [~ 3000000] (imputed)	N
603	chr6_dbb_hap3	2366698	2366699	rs9263567	21844884	Wheeler HE	2011-08-16	Pharmacogenomics J	Genome-wide meta-analysis identifies variants associated with platinating agent susceptibility across populations.	Response to platinum-based chemotherapy (carboplatin)	176 Sub-Saharan African ancestry lymphoblastoid cell lines, 83 African ancestry lymphoblastoid cell lines, 175 East Asian ancestry lymphoblastoid cell lines, 174 European ancestry lymphoblastoid cell lines	NA	6p21.33	intergenic	rs9263567-?		2E-6				NR [~ 3000000] (imputed)	N
603	chr6_dbb_hap3	2370264	2370265	rs9263622	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.33		rs9263622-T	0.603	5E-29				Affymetrix [10369434] (imputed)	N
603	chr6_dbb_hap3	2371200	2371201	rs6457327	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Prostate cancer	7,438 White British ancestry cases, 118,206 White British ancestry controls	NA	6p21.33		rs6457327-?	NR	5E-8		1.1003	[1.07-1.13]	NR [680312]	N
603	chr6_dbb_hap3	2371200	2371201	rs6457327	20639881	Conde L	2010-07-18	Nat Genet	Genome-wide association study of follicular lymphoma identifies a risk locus at 6p21.32.	Follicular lymphoma	681 European ancestry cases, 750 European ancestry controls	up to 3,164 European ancestry cases, 6,208 European ancestry controls	6p21.33	C6orf15	rs6457327-C	0.56	7E-6	(FL)	1.47	[1.27-1.72]	Illumina [312768]	N
603	chr6_dbb_hap3	2371200	2371201	rs6457327	19620980	Skibola CF	2009-07-20	Nat Genet	Genetic variants at 6p21.33 are associated with susceptibility to follicular lymphoma.	Follicular lymphoma	189 European ancestry cases, 592 European controls	456 European ancestry cases, 2,785 European ancestry controls	6p21.33	STG, PSORS1	rs6457327-C	0.62	5E-11		1.69	[1.43-2.00]	Illumina [~ 500000]	N
603	chr6_dbb_hap3	2372773	2372776	rs141232332	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	C6orf15	rs141232332-G	0.439	2E-17	(Leukocyte immunoglobulin-like receptor subfamily B member 1, LILRB1.5090.49.2)	0.21	[0.17-0.25] unit increase	Affymetrix [10572788] (imputed)	N
603	chr6_dbb_hap3	2374410	2374411	rs2517473	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	6p21.33	C6orf15	rs2517473-C	0.92125	2E-8		0.0215969	[0.014-0.029] unit decrease	Affymetrix [NR] (imputed)	N
603	chr6_dbb_hap3	2375786	2375787	rs1265057	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p21.33	C6orf15	rs1265057-C	0.491	2E-6		0.053	[0.031-0.075] unit decrease	Affymetrix, Illumina [7374092] (imputed)	N
603	chr6_dbb_hap3	2375980	2375981	rs3132556	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	6p21.33	NR	rs3132556-A	0.150099	4E-8		0.048321012	[0.031-0.066] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
603	chr6_dbb_hap3	2375980	2375981	rs3132556	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	6p21.33	NR	rs3132556-T	0.184341545793891	8E-15		0.012361368	[0.0092-0.0155] unit decrease	NR [NR]	N
603	chr6_dbb_hap3	2375980	2375981	rs3132556	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	6p21.33	NR	rs3132556-T	0.184341545793891	2E-14		0.015899843	[0.012-0.02] unit decrease	NR [NR]	N
603	chr6_dbb_hap3	2375980	2375981	rs3132556	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	6p21.33	NR	rs3132556-T	0.184341545793891	9E-15		0.010477979	[0.0078-0.0131] unit decrease	NR [NR]	N
603	chr6_dbb_hap3	2375980	2375981	rs3132556	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.33	ATP6V1G2, ATP6V1G2-DDX39B, C6orf15, CCHCR1, CDSN, DDR1, DDX39B, DPCR1, FLOT1, GTF2H4, HCG22, HCG26, HCG27, HCP5, HLA-B, HLA-C, IER3, LINC00243, LTA, MCCD1, MICA, MICB, MIR4640, MIR6891, MUC21, MUC22, NFKBIL1, POU5F1, PSORS1C1, PSORS1C2, PSORS1C3, SFTA2, SNORD117, SNORD84, TCF19, TNF, TUBB, VARS2	rs3132556-A		1E-9		1.08	[1.05-1.11]	Affymetrix, Illumina [NR]	N
603	chr6_dbb_hap3	2376815	2376816	rs2233980	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	6p21.33	NR	rs2233980-A	0.130672432110858	1E-18		0.01198786	[0.0093-0.0147] unit decrease	NR [NR]	N
603	chr6_dbb_hap3	2377187	2377188	rs2233974	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	C6orf15	rs2233974-G	NR	3E-9		0.020957	[0.014-0.028] unit increase	Affymetrix [321016] (imputed)	N
603	chr6_dbb_hap3	2377187	2377188	rs2233974	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p21.33	C6orf15	rs2233974-C	0.377	8E-27				Illumina [118177]	N
603	chr6_dbb_hap3	2377875	2377876	rs1265051	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	C6orf15	rs1265051-G	NR	2E-8		0.0200002	[0.013-0.027] unit increase	Affymetrix [319769] (imputed)	N
603	chr6_dbb_hap3	2377875	2377876	rs1265051	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	C6orf15	rs1265051-G	NR	4E-8		0.0193546	[0.012-0.026] unit increase	Affymetrix [319769] (imputed)	N
603	chr6_dbb_hap3	2378376	2378377	rs2233956	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	C6orf15	rs2233956-C	NR	9E-13		0.0241887	[0.018-0.031] unit decrease	Affymetrix [319769] (imputed)	N
603	chr6_dbb_hap3	2378376	2378377	rs2233956	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	C6orf15	rs2233956-C	NR	3E-18		0.0327829	[0.025-0.04] unit decrease	Affymetrix [323858] (imputed)	N
603	chr6_dbb_hap3	2378376	2378377	rs2233956	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	C6orf15	rs2233956-C	NR	8E-12		0.0231628	[0.017-0.03] unit decrease	Affymetrix [319769] (imputed)	N
603	chr6_dbb_hap3	2378376	2378377	rs2233956	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	C6orf15	rs2233956-C	NR	2E-17		0.0319326	[0.025-0.039] unit decrease	Affymetrix [127266] (imputed)	N
603	chr6_dbb_hap3	2378376	2378377	rs2233956	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	C6orf15	rs2233956-C	NR	9E-10		0.0207055	[0.014-0.027] unit increase	Affymetrix [321016] (imputed)	N
603	chr6_dbb_hap3	2378376	2378377	rs2233956	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	C6orf15	rs2233956-C	NR	6E-9		0.0214605	[0.014-0.029] unit increase	Affymetrix [323123] (imputed)	N
603	chr6_dbb_hap3	2378376	2378377	rs2233956	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	C6orf15	rs2233956-C	NR	3E-9		0.0203515	[0.014-0.027] unit decrease	Affymetrix [321169] (imputed)	N
603	chr6_dbb_hap3	2378376	2378377	rs2233956	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in ever smokers	23,223 European ancestry cases,  16,964 European ancestry controls	NA	6p21.33	C6orf15	rs2233956-C	0.167124691	5E-16		1.1730286	[1.128692308-1.219106364]	Illumina [10439017] (imputed)	N
603	chr6_dbb_hap3	2378376	2378377	rs2233956	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.33	intergenic	rs2233956-G	0.1813	6E-48		2.77	[NR]	Illumina [242824]	N
603	chr6_dbb_hap3	2378422	2378423	rs2233955	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	C6orf15	rs2233955-A	NR	1E-9		0.0215169	[0.015-0.028] unit increase	Affymetrix [319769] (imputed)	N
603	chr6_dbb_hap3	2378422	2378423	rs2233955	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	C6orf15	rs2233955-A	NR	4E-9		0.0208588	[0.014-0.028] unit increase	Affymetrix [319769] (imputed)	N
603	chr6_dbb_hap3	2378580	2378581	rs1265048	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	C6orf15	rs1265048-C	NR	1E-8		0.0172428	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
603	chr6_dbb_hap3	2378580	2378581	rs1265048	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	C6orf15	rs1265048-C	NR	2E-9		0.0182055	[0.012-0.024] unit decrease	Affymetrix [321016] (imputed)	N
603	chr6_dbb_hap3	2378580	2378581	rs1265048	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	C6orf15	rs1265048-C	NR	4E-10		0.0206963	[0.014-0.027] unit decrease	Affymetrix [323123] (imputed)	N
603	chr6_dbb_hap3	2378580	2378581	rs1265048	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	C6orf15	rs1265048-C	NR	4E-8		0.0167663	[0.011-0.023] unit increase	Affymetrix [321169] (imputed)	N
603	chr6_dbb_hap3	2378580	2378581	rs1265048	32421744	Gzara C	2020-05-18	PLoS Pathog	Family-based genome-wide association study of leprosy in Vietnam.	Leprosy	1,749 Vietnamese ancestry cases	1,181 Vietnamese ancestry cases, 688 Vietnamese ancestry controls	6p21.33	C6orf15	rs1265048-T	0.51	6E-11		1.4492754	[1.25-1.72]	Illumina [5607170] (imputed)	N
603	chr6_dbb_hap3	2378580	2378581	rs1265048	30013184	Waage J	2018-07-16	Nat Genet	Genome-wide association and HLA fine-mapping studies identify risk loci and genetic pathways underlying allergic rhinitis.	Allergic sensitization	8,040 European ancestry cases, 16,441 European ancestry controls	NA	6p21.33	C5orf15, PSORS1C1	rs1265048-T	0.64	1E-7		1.1235955	[1.08-1.18]	Affymetrix, Illumina [16531985] (imputed)	N
603	chr6_dbb_hap3	2378605	2378606	rs3094222	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Waist-hip ratio and HDL-C (pairwise)	402,477 European ancestry individuals, 11,333 East Asian, South Asian, Hispanic and African American ancestry individuals	NA	6p21.33	C6orf15-PSORS1C1	rs3094222-A	0.9135	1E-11				Affymetrix, Illumina [2331072] (imputed)	N
603	chr6_dbb_hap3	2378605	2378606	rs3094222	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	6p21.33	C6orf15, PSORS1C1	rs3094222-G	0.108346341	9E-17		1.1642892	[1.123294727-1.206779842]	Illumina [10439017] (imputed)	N
603	chr6_dbb_hap3	2378635	2378636	rs1265047	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	Intergenic	rs1265047-G	0.3485915	2E-17	(EA, MHC class I polypeptide-related sequence A)	0.3847	[0.3-0.47] unit increase	Affymetrix [509946]	N
603	chr6_dbb_hap3	2379111	2379112	rs3130976	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	PSORS1C1	rs3130976-C	NR	1E-8		0.0197052	[0.013-0.026] unit decrease	Affymetrix [323858] (imputed)	N
603	chr6_dbb_hap3	2379111	2379112	rs3130976	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	PSORS1C1	rs3130976-C	NR	3E-8		0.0190506	[0.012-0.026] unit decrease	Affymetrix [127266] (imputed)	N
603	chr6_dbb_hap3	2379111	2379112	rs3130976	32814899	Meyer HV	2020-08-19	Nature	Genetic and functional insights into the fractal structure of the heart.	Myocardial fractal dimension (slice 8)	18,096 European individuals		6p21.33	NR	rs3130976-C	0.28549	3E-8		0.064606	[0.042-0.087] unit increase	Affymetrix [14134301] (imputed)	N
603	chr6_dbb_hap3	2379111	2379112	rs3130976	32814899	Meyer HV	2020-08-19	Nature	Genetic and functional insights into the fractal structure of the heart.	Myocardial fractal dimension (slice 7)	18,096 European individuals		6p21.33	NR	rs3130976-C	0.28549	4E-7		0.059143	[0.036-0.082] unit increase	Affymetrix [14134301] (imputed)	N
603	chr6_dbb_hap3	2379111	2379112	rs3130976	32814899	Meyer HV	2020-08-19	Nature	Genetic and functional insights into the fractal structure of the heart.	Myocardial fractal dimension (slice 6)	18,096 European individuals		6p21.33	NR	rs3130976-C	0.28549	4E-8		0.064023	[0.041-0.087] unit increase	Affymetrix [14134301] (imputed)	N
603	chr6_dbb_hap3	2379111	2379112	rs3130976	32814899	Meyer HV	2020-08-19	Nature	Genetic and functional insights into the fractal structure of the heart.	Myocardial fractal dimension (slice 5)	18,096 European individuals		6p21.33	NR	rs3130976-C	0.28549	1E-8		0.066545	[0.044-0.089] unit increase	Affymetrix [14134301] (imputed)	N
603	chr6_dbb_hap3	2379111	2379112	rs3130976	32814899	Meyer HV	2020-08-19	Nature	Genetic and functional insights into the fractal structure of the heart.	Myocardial fractal dimension (slice 4)	18,096 European individuals		6p21.33	NR	rs3130976-C	0.28549	2E-6		0.055881	[0.033-0.079] unit increase	Affymetrix [14134301] (imputed)	N
603	chr6_dbb_hap3	2379111	2379112	rs3130976	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	6p21.33	C6orf15, PSORS1C1	rs3130976-T	NR	5E-8		0.124739	[0.08-0.169] unit increase	Illumina [at least 950000] (imputed)	N
603	chr6_dbb_hap3	2379368	2379369	rs3130979	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	6p21.33		rs3130979-G	0.655198	1E-8		0.0238702	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
603	chr6_dbb_hap3	2379575	2379576	rs3130980	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PSORS1C1	rs3130980-T	NR	1E-8		0.0171125	[0.011-0.023] unit decrease	Affymetrix [321016] (imputed)	N
603	chr6_dbb_hap3	2379575	2379576	rs3130980	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	PSORS1C1	rs3130980-T	NR	2E-9		0.01962	[0.013-0.026] unit decrease	Affymetrix [323123] (imputed)	N
603	chr6_dbb_hap3	2380457	2380458	rs3094219	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PSORS1C1, CDSN	rs3094219-A	NR	1E-8		0.0159832	[0.01-0.022] unit decrease	Affymetrix [321016] (imputed)	N
603	chr6_dbb_hap3	2382111	2382114	rs34182778	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p21.33	CDSN	rs34182778-G		5E-44		0.035	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
603	chr6_dbb_hap3	2382550	2382551	rs3094214	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	PSORS1C1, CDSN	rs3094214-A	NR	8E-11		0.0199471	[0.014-0.026] unit decrease	Affymetrix [323123] (imputed)	N
603	chr6_dbb_hap3	2382938	2382939	rs3094212	20139978	Kamatani Y	2010-02-07	Nat Genet	Genome-wide association study of hematological and biochemical traits in a Japanese population.	White blood cell count	14,677 Japanese ancestry individuals	NA	6p21.33	PSORS1C1, CDSN	rs3094212-C	0.35	7E-9		0.07	[0.046-0.094] unit increase	Illumina [561583]	N
603	chr6_dbb_hap3	2382992	2382993	rs3819686	29534301	Nishida N	2018-03-13	Hepatology	Key HLA-DRB1-DQB1 haplotypes and role of the BTNL2 gene for response to a hepatitis B vaccine.	Response to hepatitis B vaccine	107 Japanese ancestry low responder individuals, 351 Japanese ancestry intermediate responder individuals, 735 Japanese ancestry high responder individuals	NA	6p21.33	PSORS1C1	rs3819686-?		7E-6		0.15	unit decrease	Affymetrix [427664]	N
603	chr6_dbb_hap3	2383592	2383593	rs78479381	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.33		rs78479381-T	0.109186	3E-20		1.0718842	[1.05-1.09]	Affymetrix, Illumina [9851866] (imputed)	N
603	chr6_dbb_hap3	2384522	2384523	rs3130991	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	C6orf15, PSORS1C1, CDSN	rs3130991-T	0.3442211	4E-15	(EA, MHC class I polypeptide-related sequence B)	0.3612	[0.27-0.45] unit increase	Affymetrix [509946]	N
603	chr6_dbb_hap3	2385312	2385313	rs3095318	27611488	Almoguera B	2016-09-09	Am J Respir Crit Care Med	Identification of Four Novel Loci in Asthma in European American and African American Populations.	Adult asthma	337 African American allergic asthma cases, 321 African American non-allergic asthma cases, 1,367 African American controls, 466 European American allergic asthma cases, 626 European American non-allergic asthma cases, 7,878 European American controls	NA	6p21.33	PSORS1C1	rs3095318-?	NR	7E-8	(EA)			Affymetrix, Illumina [NR] (imputed)	N
603	chr6_dbb_hap3	2385312	2385313	rs3095318	27611488	Almoguera B	2016-09-09	Am J Respir Crit Care Med	Identification of Four Novel Loci in Asthma in European American and African American Populations.	Adult asthma	337 African American allergic asthma cases, 321 African American non-allergic asthma cases, 1,367 African American controls, 466 European American allergic asthma cases, 626 European American non-allergic asthma cases, 7,878 European American controls	NA	6p21.33	PSORS1C1	rs3095318-?	NR	2E-11		0.351	[0.25-0.45] unit increase	Affymetrix, Illumina [NR] (imputed)	N
603	chr6_dbb_hap3	2385399	2385400	rs2302398	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	152,447 East Asian ancestry individuals	NA	6p21.33		rs2302398-G	0.773065	4E-13		0.026479	[0.019-0.034] unit decrease	Illumina [13478948] (imputed)	N
603	chr6_dbb_hap3	2385399	2385400	rs2302398	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	153,015 East Asian ancestry individuals	NA	6p21.33		rs2302398-G	0.773485	9E-11		0.0240481	[0.017-0.031] unit decrease	Illumina [13478961] (imputed)	N
603	chr6_dbb_hap3	2386150	2386151	rs6927322	26503584	Litchfield K	2015-10-27	Nat Commun	Identification of four new susceptibility loci for testicular germ cell tumour.	Testicular germ cell tumor	986 European ancestry cases, 4,946 European ancestry controls	4,009 cases, 4,066 controls	6p21.33	NR	rs6927322-T	0.04	6E-6		1.24	[1.08-1.43]	Illumina [~ 8900000] (imputed)	N
603	chr6_dbb_hap3	2386877	2386878	rs4410768	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p21.33	CDSN, PSORS1C1	rs4410768-G	0.03	2E-10	(Turkish)	3.52	[2.34-5.30]	Illumina [up to 547389]	N
603	chr6_dbb_hap3	2389135	2389136	rs9263688	26151496	Chen PL	2015-07-07	Nat Commun	Genetic determinants of antithyroid drug-induced agranulocytosis by human leukocyte antigen genotyping and genome-wide association study.	Thionamide-induced agranulocytosis in Graves' disease	21 East Asian ancestry cases with agranulocytosis, 662 East Asian ancestry cases without agranulocytosis	21 East Asian ancestry cases with agranulocytosis, 546 East Asian ancestry cases without agranulocytosis	6p21.33	HLA	rs9263688-G	0.053	5E-21	(trend)	8.06	[4.86-13.37] (allelic)	Affymetrix [522980]	N
603	chr6_dbb_hap3	2389160	2389161	rs3094204	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PSORS1C1	rs3094204-A	NR	2E-9		0.0169554	[0.011-0.022] unit decrease	Affymetrix [319769] (imputed)	N
603	chr6_dbb_hap3	2389160	2389161	rs3094204	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	PSORS1C1	rs3094204-A	NR	6E-9		0.0163675	[0.011-0.022] unit decrease	Affymetrix [319769] (imputed)	N
603	chr6_dbb_hap3	2389160	2389161	rs3094204	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	PSORS1C1	rs3094204-A	NR	3E-8		0.0157756	[0.01-0.021] unit decrease	Affymetrix [321169] (imputed)	N
603	chr6_dbb_hap3	2389217	2389218	rs3095307	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	PSORS1C1	rs3095307-C	NR	3E-9		0.0181221	[0.012-0.024] unit decrease	Affymetrix [323123] (imputed)	N
603	chr6_dbb_hap3	2389936	2389937	rs3095304	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PSORS1C1	rs3095304-T	NR	8E-9		0.0205624	[0.014-0.028] unit decrease	Affymetrix [319769] (imputed)	N
603	chr6_dbb_hap3	2390262	2390263	rs9263692	32492067	Ruffieux H	2020-06-03	PLoS Comput Biol	A fully joint Bayesian quantitative trait locus mapping of human protein abundance in plasma.	Protein quantitative trait loci	394 European ancestry individuals	548 European ancestry individuals	6p21.33	NR	rs9263692-?	NR	5E-7	(MICA)			Illumina [~ 4000000] (imputed)	N
603	chr6_dbb_hap3	2390756	2390757	rs3815087	21801394	Genin E	2011-07-29	Orphanet J Rare Dis	Genome-wide association study of Stevens-Johnson Syndrome and Toxic Epidermal Necrolysis in Europe.	Drug-induced Stevens-Johnson syndrome or toxic epidermal necrolysis (SJS/TEN)	424 European ancestry cases, 1,881 European ancestry controls	NA	6p21.33	PSORS1C1	rs3815087-A	0.21	3E-7		1.53	[1.29-1.80]	Illumina [268914]	N
603	chr6_dbb_hap3	2390756	2390757	rs3815087	20041166	Fellay J	2009-12-24	PLoS Genet	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	6p21.33	CDSN	rs3815087-?	NR	8E-8	(progression)			Illumina [NR]	N
603	chr6_dbb_hap3	2391116	2391117	rs3094196	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	PSORS1C1	rs3094196-G	NR	9E-10		0.0228214	[0.016-0.03] unit decrease	Affymetrix [323123] (imputed)	N
603	chr6_dbb_hap3	2391368	2391369	rs13209303	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6p21.33	PSORS1C2	rs13209303-?	NR	7E-6	(TAG 52:6)	0.4081859	[0.23-0.59] unit increase	Affymetrix [at least 2500000] (imputed)	N
603	chr6_dbb_hap3	2392172	2392173	rs6931921	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Strep throat	52,487 European ancestry cases, 22,017 European ancestry controls	NA	6p21.33	NR	rs6931921-?	NR	5E-7		0.045	[0.027-0.063] unit decrease	Illumina [at least 560000] (imputed)	N
603	chr6_dbb_hap3	2392463	2392464	rs3131004	34075027	Gonda X	2021-06-01	Transl Psychiatry	Genetic underpinnings of affective temperaments: a pilot GWAS investigation identifies a new genome-wide significant SNP for anxious temperament in ADGRB3 gene.	Hyperthymic temperament	775 European ancestry individuals	NA	6p21.33		rs3131004-G	NR	9E-7		0.04087	unit decrease	Illumina [2550710] (imputed)	N
603	chr6_dbb_hap3	2392968	2392969	rs9263715	32771030	Tangtanatakul P	2020-08-08	Arthritis Res Ther	Meta-analysis of genome-wide association study identifies FBN2 as a novel locus associated with systemic lupus erythematosus in Thai population.	Systemic lupus erythematosus	487 Thai cases, 1,606 Thai controls	405 Thai cases, 1,590 Thai controls	6p21.33	PSORS1C1	rs9263715-A	0.32	2E-9		1.4329	[NR]	Illumina [421909] (imputed)	N
603	chr6_dbb_hap3	2394190	2394191	rs74375290	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Epithelial ovarian cancer	1,112 White British ancestry cases, 147,944 White British ancestry controls	NA	6p21.33		rs74375290-?	NR	6E-6		2.32386	[1.96-2.69]	NR [666300]	N
603	chr6_dbb_hap3	2394466	2394467	rs3130559	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PSORS1C1	rs3130559-T	NR	2E-8		0.0192616	[0.013-0.026] unit increase	Affymetrix [319769] (imputed)	N
603	chr6_dbb_hap3	2394466	2394467	rs3130559	23144326	Kim DK	2012-11-09	Am J Respir Crit Care Med	Genome-wide association analysis of blood biomarkers in chronic obstructive pulmonary disease.	Chronic obstructive pulmonary disease-related biomarkers	Up to 1,951 European ancestry smokers	NA	6p21.33	PSORS1C1	rs3130559-T	0.2	8E-9	(SP-D)			Illumina [588352]	N
603	chr6_dbb_hap3	2394979	2394980	rs6906565	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	6p21.33	NR	rs6906565-T	0.0994448200117359	2E-12		0.01719559	[0.012-0.022] unit increase	NR [NR]	N
603	chr6_dbb_hap3	2394979	2394980	rs6906565	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	6p21.33	NR	rs6906565-T	0.0994448200117359	2E-12		0.011002761	[0.0079-0.0141] unit increase	NR [NR]	N
603	chr6_dbb_hap3	2395299	2395300	rs3131006	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mononucleosis	17,457 European ancestry cases, 68,446 European ancestry controls	NA	6p21.33	NR	rs3131006-?	NR	3E-6		0.0727	[0.042-0.103] unit decrease	Illumina [at least 560000] (imputed)	N
603	chr6_dbb_hap3	2395897	2395898	rs3132541	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental longevity (mother's age at death)	52,776 middle-aged British individuals	NA	6p21.33	NR	rs3132541-?	NR	5E-6		0.032324	[0.018-0.046] unit increase	Affymetrix [9658292] (imputed)	N
603	chr6_dbb_hap3	2396401	2396402	rs143933372	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Creatinine levels	142,097 Japanese ancestry individuals	NA	6p21.33	PSORS1C1	rs143933372-?	NR	2E-8		0.03607	[0.024-0.049] unit decrease novel	Illumina [6108953] (imputed)	N
603	chr6_dbb_hap3	2396738	2396739	rs4959053	23001997	Hou S	2012-12-06	Arthritis Rheum	Identification of a susceptibility locus in STAT4 for Behcet's disease in Han Chinese in a genome-wide association study.	Behcet's disease	147 Han Chinese ancestry cases, 951 Han Chinese ancestry controls	554 Han Chinese ancestry cases, 1,159 Han Chinese ancestry controls	6p21.33	PSORS1C1	rs4959053-?	.11	2E-20		4.38	[3.20-5.99]	Affymetrix [661736]	N
603	chr6_dbb_hap3	2397779	2397779	rs548139121	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	PSORS1C1	rs548139121-TAA	NR	4E-8		0.0196747	[0.013-0.027] unit increase	Affymetrix [323123] (imputed)	N
603	chr6_dbb_hap3	2398095	2398096	rs3823418	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals, at least 88,461 European ancestry individuals	NA	6p21.33	PSORS1C1	rs3823418-A	0.1032	2E-7	(Japanese)	0.0338	[0.021-0.047] unit decrease	Illumina [1986983] (imputed)	N
603	chr6_dbb_hap3	2398095	2398096	rs3823418	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	6p21.33	PSORS1C1	rs3823418-A	0.15	2E-7		0.026	[0.0084-0.0436] unit increase	Affymetrix, Illumina [2704730] (imputed)	N
603	chr6_dbb_hap3	2398566	2398567	rs3132569	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PSORS1C1	rs3132569-A	NR	2E-10		0.022581	[0.016-0.03] unit decrease	Affymetrix [321016] (imputed)	N
603	chr6_dbb_hap3	2398723	2398724	rs4294047	33841421	Li J	2021-03-25	Front Immunol	Variants at the MHC Region Associate With Susceptibility to <i>Clostridioides difficile</i> Infection: A Genome-Wide Association Study Using Comprehensive Electronic Health Records.	Clostridioides difficle infection in antibiotics-users	587 European ancestry cases, 3,166 European ancestry controls	NA	6p21.33	PSORS1C2	rs4294047-A	0.103	8E-6		1.53	[1.28-1.8]	Illumina [64973696] (imputed)	N
603	chr6_dbb_hap3	2398814	2398815	rs3130564	25827949	Kunz M	2015-05-04	Exp Dermatol	Genome-wide association study identifies new susceptibility loci for cutaneous lupus erythematosus.	Cutaneous lupus erythematosus	151 European ancestry cases, 1,288 European ancestry controls	219 European ancestry cases, 262 European ancestry controls	6p21.33	PSORS1C1	rs3130564-T	0.163	4E-10		2.05	[1.56-2.70]	Affymetrix [906600]	N
603	chr6_dbb_hap3	2398814	2398815	rs3130564	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.33	PSORS1C1	rs3130564-T	0.1934	1E-42		2.62	[NR]	Illumina [242824]	N
603	chr6_dbb_hap3	2399413	2399414	rs75881311	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.33	NR	rs75881311-A	0.082	3E-13	(conditional)	1.279	[1.21-1.35]	Illumina [11270530] (imputed)	N
603	chr6_dbb_hap3	2399445	2399446	rs61444472	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	683 Turkish ancestry cases, 1,721 Turkish ancestry controls	NA	6p21.33	PSORSIC1	rs61444472-?	NR	2E-17	(conditional on rs2844678 and rs9262437)			Illumina [4495750] (imputed)	N
603	chr6_dbb_hap3	2400104	2400105	rs3132565	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	6p21.33	NR	rs3132565-A	NR	1E-9		1.07	[NR]	Illumina [7158791] (imputed)	N
603	chr6_dbb_hap3	2400335	2400336	rs3094669	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	6p21.33	NR	rs3094669-G	0.135689518720733	6E-9		0.015982522	[0.011-0.021] unit decrease	NR [NR]	N
603	chr6_dbb_hap3	2400729	2400730	rs13198298	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	6p21.33	NR	rs13198298-T	0.101343027086662	2E-12		0.010678657	[0.0077-0.0137] unit increase	NR [NR]	N
603	chr6_dbb_hap3	2400729	2400730	rs13198298	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	6p21.33	NR	rs13198298-T	0.101343027086662	3E-12		0.01306148	[0.0094-0.0167] unit increase	NR [NR]	N
603	chr6_dbb_hap3	2400729	2400730	rs13198298	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	6p21.33	NR	rs13198298-T	0.101343027086662	6E-12		0.013910175	[0.0099-0.0179] unit increase	NR [NR]	N
603	chr6_dbb_hap3	2401201	2401202	rs1265101	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PSORS1C1	rs1265101-A	NR	5E-12		0.058179	[0.042-0.075] unit decrease	Affymetrix [321016] (imputed)	N
603	chr6_dbb_hap3	2401733	2401734	rs28732100	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Subjective well-being (MTAG)	388,538 European ancestry individuals	NA	6p21.33	NR	rs28732100-C	0.9494	2E-8		0.0245	[0.016-0.033] unit increase	Illumina [NR] (imputed)	N
603	chr6_dbb_hap3	2401733	2401734	rs28732100	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Neuroticism (MTAG)	168,105 European ancestry individuals	NA	6p21.33	NR	rs28732100-C	0.9458	2E-8		0.037	[0.024-0.05] unit decrease	Illumina [NR] (imputed)	N
603	chr6_dbb_hap3	2401733	2401734	rs28732100	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms (MTAG)	354,862 European ancestry individuals	NA	6p21.33	NR	rs28732100-C	0.9481	2E-9		0.0293	[0.02-0.039] unit decrease	Illumina [NR] (imputed)	N
603	chr6_dbb_hap3	2401996	2401997	rs3094665	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	PSORS1C1	rs3094665-C	NR	1E-8		0.020395	[0.013-0.027] unit decrease	Affymetrix [323123] (imputed)	N
603	chr6_dbb_hap3	2402402	2402403	rs3132559	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PSORS1C1	rs3132559-G	NR	2E-8		0.0159183	[0.01-0.021] unit decrease	Affymetrix [321016] (imputed)	N
603	chr6_dbb_hap3	2402402	2402403	rs3132559	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	PSORS1C1	rs3132559-G	NR	2E-9		0.0185127	[0.012-0.025] unit decrease	Affymetrix [323123] (imputed)	N
603	chr6_dbb_hap3	2402447	2402448	rs1265100	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6p21.33		rs1265100-?	NR	8E-13		0.894617	[0.86-0.93]	NR [685523]	N
603	chr6_dbb_hap3	2402550	2402551	rs1265099	30626913	Amare AT	2019-01-09	Mol Psychiatry	Bivariate genome-wide association analyses of the broad depression phenotype combined with major depressive disorder, bipolar disorder or schizophrenia reveal eight novel genetic loci for depression.	Broad depression or schizophrenia	9,240 European ancestry broad depression cases, 9,519 European ancestry broad depression controls, 51,258 European ancestry individuals, 36,989 European and East Asian ancestry schizophrenia cases, 113,075 European and East Asian ancestry schizophrenia controls	322,580 individuals	6p21.33	PSORS1C2	rs1265099-A	0.41	2E-10				Affymetrix, Illumina [at least 918921] (imputed)	N
603	chr6_dbb_hap3	2402770	2402771	rs2074478	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.33		rs2074478-T	0.809793	4E-16		1.0453895	[1.03-1.05]	Affymetrix, Illumina [9851866] (imputed)	N
603	chr6_dbb_hap3	2403405	2403406	rs3130573	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	PSORS1C1, PSORS1C2	rs3130573-G	NR	1E-9		0.0200379	[0.014-0.026] unit decrease	Affymetrix [323858] (imputed)	N
603	chr6_dbb_hap3	2403405	2403406	rs3130573	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	PSORS1C1, PSORS1C2	rs3130573-G	NR	3E-9		0.0196118	[0.013-0.026] unit decrease	Affymetrix [127266] (imputed)	N
603	chr6_dbb_hap3	2403405	2403406	rs3130573	21750679	Allanore Y	2011-07-07	PLoS Genet	Genome-wide scan identifies TNIP1, PSORS1C1, and RHOB as novel risk loci for systemic sclerosis.	Systemic sclerosis	564 European ancestry cases, 1,776 European ancestry controls	1,682 European ancestry cases, 3,926 European ancestry controls	6p21.33	PSORS1C1	rs3130573-G	0.32	6E-10		1.25	[1.17-1.35]	Illumina [489814]	N
603	chr6_dbb_hap3	2403596	2403597	rs1265097	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PSORS1C1, PSORS1C2	rs1265097-A	NR	3E-9		0.0309409	[0.021-0.041] unit increase	Affymetrix [319769] (imputed)	N
603	chr6_dbb_hap3	2403596	2403597	rs1265097	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	PSORS1C1, PSORS1C2	rs1265097-A	NR	4E-8		0.0285098	[0.018-0.039] unit increase	Affymetrix [319769] (imputed)	N
603	chr6_dbb_hap3	2403596	2403597	rs1265097	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PSORS1C1, PSORS1C2	rs1265097-A	NR	3E-15		0.0410297	[0.031-0.051] unit decrease	Affymetrix [321016] (imputed)	N
603	chr6_dbb_hap3	2403596	2403597	rs1265097	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	PSORS1C1, PSORS1C2	rs1265097-A	NR	7E-10		0.0349645	[0.024-0.046] unit decrease	Affymetrix [323123] (imputed)	N
603	chr6_dbb_hap3	2403596	2403597	rs1265097	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	6p21.33	PSORS1C1	rs1265097-C	0.917203	7E-18		0.0323248	[0.025-0.04] unit decrease	Affymetrix [NR] (imputed)	N
603	chr6_dbb_hap3	2403596	2403597	rs1265097	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	6p21.33	NR	rs1265097-?	NR	8E-7		0.04125219	[0.025-0.058] unit decrease	Illumina [34656550] (imputed)	N
603	chr6_dbb_hap3	2403596	2403597	rs1265097	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.33	PSORS1C2, PSORS1C1	rs1265097-A	0.1234	1E-10		0.072	[0.05-0.094] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
603	chr6_dbb_hap3	2403596	2403597	rs1265097	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	6p21.33	PSORS1C1, PSORS1C2	rs1265097-A	0.115	2E-32		0.059	[0.049-0.069] unit decrease	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
603	chr6_dbb_hap3	2403626	2403627	rs1265096	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	6p21.33	NR	rs1265096-?		7E-9	(SFTPD)	0.3365	[NR] unit increase	Illumina [NR]	N
603	chr6_dbb_hap3	2403743	2403744	rs16898823	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals	at least 101,293 European ancestry individuals	6p21.33	PSORS1C1, PSORS1C2	rs16898823-A	0.9	3E-8	(Japanese)	0.037	[0.023-0.051] unit increase	Illumina [5864938] (imputed)	N
603	chr6_dbb_hap3	2404324	2404325	rs1265093	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PSORS1C1	rs1265093-A	NR	2E-11		0.0205689	[0.015-0.027] unit increase	Affymetrix [319769] (imputed)	N
603	chr6_dbb_hap3	2404324	2404325	rs1265093	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	PSORS1C1	rs1265093-A	NR	1E-10		0.0198483	[0.014-0.026] unit increase	Affymetrix [319769] (imputed)	N
603	chr6_dbb_hap3	2404324	2404325	rs1265093	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	PSORS1C1	rs1265093-A	NR	2E-11		0.0223747	[0.016-0.029] unit decrease	Affymetrix [323123] (imputed)	N
603	chr6_dbb_hap3	2404324	2404325	rs1265093	23144326	Kim DK	2012-11-09	Am J Respir Crit Care Med	Genome-wide association analysis of blood biomarkers in chronic obstructive pulmonary disease.	Chronic obstructive pulmonary disease-related biomarkers	Up to 1,951 European ancestry smokers	NA	6p21.33	PSORS1C1, CCHCR1	rs1265093-A	0.26	6E-9	(SP-D)			Illumina [588352]	N
603	chr6_dbb_hap3	2404395	2404396	rs2285803	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PSORS1C1	rs2285803-T	NR	3E-8		0.0173578	[0.011-0.023] unit decrease	Affymetrix [319769] (imputed)	N
603	chr6_dbb_hap3	2404395	2404396	rs2285803	33875642	Duran-Lozano L	2021-04-19	Blood Cancer J	Germline variants at SOHLH2 influence multiple myeloma risk.	Multiple myeloma	4,376 European ancestry cases, 345,887 European ancestry controls	5,598 European ancestry cases, 15,261 European ancestry controls	6p21.33	PSORS1C2	rs2285803-T	0.26	1E-11		1.17	[NR]	Illumina [33000000] (imputed)	N
603	chr6_dbb_hap3	2404395	2404396	rs2285803	23955597	Chubb D	2013-08-18	Nat Genet	Common variation at 3q26.2, 6p21.33, 17p11.2 and 22q13.1 influences multiple myeloma risk.	Multiple myeloma	2,335 European ancestry cases, 7,306 European ancestry controls	2,357 European ancestry cases, 3,684 European ancestry controls	6p21.33	PSORS1C1, CCHCR1, TCF19, POU5F1, CDSN	rs2285803-A	0.32	1E-10		1.192	[1.13-1.26]	Illumina [414804]	N
603	chr6_dbb_hap3	2405266	2405267	rs1265091	32769997	Zhou W	2020-08-07	Nat Commun	GWAS of thyroid stimulating hormone highlights pleiotropic effects and inverse association with thyroid cancer.	Thyroid stimulating hormone levels	119,715 European ancestry individuals	NA	6p21.33	PSORS1C1	rs1265091-T	0.187386210350798	5E-15		0.0553	[0.041-0.069] SD increase	Illumina [22400000] (imputed)	N
603	chr6_dbb_hap3	2405266	2405267	rs1265091	30367059	Teumer A	2018-10-26	Nat Commun	Genome-wide analyses identify a role for SLC17A4 and AADAT in thyroid hormone regulation.	Thyroid stimulating hormone levels	54,288 European ancestry individuals	up to 22,383 European ancestry individuals	6p21.33	PSORS1C1	rs1265091-T	0.2	5E-15		0.058	[0.044-0.072] unit increase	Affymetrix, Illumina [8048941] (imputed)	N
603	chr6_dbb_hap3	2406674	2406675	rs9263737	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Lymphocyte counts	62,076 Japanese ancestry individuals	NA	6p21.33	NR	rs9263737-?	NR	4E-8		0.03399	[0.022-0.046] unit decrease novel	Illumina [6108953] (imputed)	N
603	chr6_dbb_hap3	2407011	2407012	rs1265086	33143745	Andlauer TFM	2020-11-04	BMC Med	Treatment- and population-specific genetic risk factors for anti-drug antibodies against interferon-beta: a GWAS.	Binding antibody response to interferon beta therapy in multiple sclerosis (antibody levels; all treatment preparations)	up to 2,000 German and Swedish ancestry individuals	up to 757 German and Swedish ancestry individuals	6p21.33		rs1265086-T	0.38	5E-9	(conditional on rs9272071 + rs28746882)	0.15234222	[-0.1--0.2] unit decrease	Illumina [8550834] (imputed)	N
603	chr6_dbb_hap3	2408485	2408486	rs9263739	19915573	Asano K	2009-11-15	Nat Genet	A genome-wide association study identifies three new susceptibility loci for ulcerative colitis in the Japanese population.	Ulcerative colitis	376 Japanese ancestry cases, 934 Japanese ancestry controls	376 Japanese ancestry cases, 1,097 Japanese ancestry controls	6p21.33	HLA	rs9263739-T	0.15	4E-67		2.73	[2.43-3.07]	Illumina [513923]	N
603	chr6_dbb_hap3	2408804	2408805	rs1265081	32276964	Shete S	2020-04-10	Cancer Res	A genome-wide association study identifies two novel susceptible regions for squamous cell carcinoma of the head and neck.	Head and neck squamous cell carcinoma	2,171 European ancestry cases, 4,493 European ancestry controls	5,205 European ancestry cases, 3,232 European ancestry controls	6p21.33	CCHCR1	rs1265081-A	0.52	4E-10		1.1764705	[1.11-1.23]	Illumina [7858089] (imputed)	N
603	chr6_dbb_hap3	2409204	2409205	rs1265080	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Non-Hodgkin's lymphoma	2,400 European ancestry cases, 410,350 European ancestry controls	NA	6p21.33		rs1265080-A	NR	2E-8		1.1785504	NR	Affymetrix [7846216] (imputed)	N
603	chr6_dbb_hap3	2410242	2410243	rs1265075	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6p21.33	CCHCR1	rs1265075-A	0.076201	5E-17		0.037481945	[0.029-0.046] unit increase	Affymetrix [93095623] (imputed)	N
603	chr6_dbb_hap3	2410242	2410243	rs1265075	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	6p21.33	CCHCR1	rs1265075-A	0.076277	4E-25		0.04465471	[0.036-0.053] unit decrease	Affymetrix [93095623] (imputed)	N
603	chr6_dbb_hap3	2410242	2410243	rs1265075	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6p21.33	CCHCR1	rs1265075-A	0.076136	8E-24		0.044859033	[0.036-0.054] unit decrease	Affymetrix [93095623] (imputed)	N
603	chr6_dbb_hap3	2410242	2410243	rs1265075	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	6p21.33	CCHCR1	rs1265075-A	0.07622	8E-10		0.026229646	[0.018-0.035] unit increase	Affymetrix [93095623] (imputed)	N
603	chr6_dbb_hap3	2410405	2410406	rs886401	33143745	Andlauer TFM	2020-11-04	BMC Med	Treatment- and population-specific genetic risk factors for anti-drug antibodies against interferon-beta: a GWAS.	Binding antibody response to interferon beta therapy in multiple sclerosis (antibody levels; IFN?-1a subcutaneous and intramuscular)	up to 2,000 German and Swedish ancestry individuals	up to 757 German and Swedish ancestry individuals	6p21.33		rs886401-A	NR	4E-12		0.24661802	[0.18-0.32] unit increase	Illumina [8550834] (imputed)	N
603	chr6_dbb_hap3	2412029	2412030	rs2240060	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals, 6,795 African American individuals, 6,324 East Asian ancestry individuals, 2,335 South Asian ancestry individuals, 1,442 Hispanic individuals	NA	6p21.33	CCHCR1	rs2240060-A	NR	3E-10		0.0137	[0.0094-0.018] unit increase	Affymetrix, Illumina [8034757] (imputed)	N
603	chr6_dbb_hap3	2412029	2412030	rs2240060	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals	NA	6p21.33	CCHCR1	rs2240060-A	0.2881	6E-10		0.0136336	[0.0093-0.018] unit increase	Affymetrix, Illumina [8603712] (imputed)	N
603	chr6_dbb_hap3	2412029	2412030	rs2240060	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Microalbuminuria	51,861 European, African American, East Asian, South Asian or Hispanic ancestry cases, 297,093 European, African American, East Asian, South Asian or Hispanic ancestry controls	NA	6p21.33	CCHCR1	rs2240060-A	NR	4E-7		1.0380044	[1.02-1.05]	Affymetrix, Illumina [8326000] (imputed)	N
603	chr6_dbb_hap3	2413326	2413327	rs130071	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.33		rs130071-A	NR	3E-11		1.1198208	[1.08-1.16]	Affymetrix [7846216] (imputed)	N
603	chr6_dbb_hap3	2413326	2413327	rs130071	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6p21.33	NR	rs130071-G	0.7038	3E-16		1.0548522	[1.04-1.07]	Affymetrix [15688218] (imputed)	N
603	chr6_dbb_hap3	2413642	2413643	rs3132535	27363682	Mitchell JS	2016-07-01	Nat Commun	Genome-wide association study identifies multiple susceptibility loci for multiple myeloma.	Multiple myeloma	7,319 European ancestry cases, 234,385 European ancestry controls	2,547 European ancestry cases, 4,803 European ancestry controls	6p21.33	NR	rs3132535-A		3E-17		1.2	[1.15-1.25]	Illumina [at least 7182761] (imputed)	N
603	chr6_dbb_hap3	2413743	2413744	rs3131014	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	CCHCR1	rs3131014-A	NR	1E-8		0.0188268	[0.012-0.025] unit increase	Affymetrix [319769] (imputed)	N
603	chr6_dbb_hap3	2413743	2413744	rs3131014	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	CCHCR1	rs3131014-A	NR	2E-11		0.0223184	[0.016-0.029] unit decrease	Affymetrix [321016] (imputed)	N
603	chr6_dbb_hap3	2413743	2413744	rs3131014	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	CCHCR1	rs3131014-A	NR	7E-15		0.0280938	[0.021-0.035] unit decrease	Affymetrix [323123] (imputed)	N
603	chr6_dbb_hap3	2413855	2413856	rs9263761	33239696	Steinthorsdottir V	2020-11-25	Nat Commun	Genetic predisposition to hypertension is associated with preeclampsia in European and Central Asian women.	Preeclampsia (maternal genotype effect)	2,296 Central Asian ancestry cases, 2,059 Central Asian ancestry controls, 7,219 European ancestry cases, 155,660 European ancestry controls	592 Kazakh ancestry cases, 361 Kazakh ancestry controls, 2,043 European ancestry cases, 6,018 European ancestry controls	6p21.33		rs9263761-G	0.76	2E-6		1.11	[1.06-1.16]	Illumina [11796347] (imputed)	N
603	chr6_dbb_hap3	2414190	2414191	rs1265115	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	CCHCR1	rs1265115-A	NR	6E-9		0.0193434	[0.013-0.026] unit decrease	Affymetrix [323123] (imputed)	N
603	chr6_dbb_hap3	2415134	2415135	rs1265112	21810746	Chantarangsu S	2011-08-01	Clin Infect Dis	Genome-wide association study identifies variations in 6p21.3 associated with nevirapine-induced rash.	Nevirapine-induced rash	72 Thai ancestry nevirapine-induced rash HIV cases, 77 Thai ancestry nevirapine-tolerant rash HIV cases	88 Thai ancestry nevirapine-induced rash HIV cases, 145 Thai ancestry nevirapine-tolerant HIV cases		CCHCR1	rs1265112-G	0.06	1E-8		4.36	[2.58-7.36]	Illumina [499730]	N
603	chr6_dbb_hap3	2415626	2415627	rs130067	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	6p21.33	NR	rs130067-G	0.2	2E-7		1.05	[1.03-1.07]	Illumina [20370935] (imputed)	N
603	chr6_dbb_hap3	2415626	2415627	rs130067	21743467	Kote-Jarai Z	2011-07-10	Nat Genet	Seven prostate cancer susceptibility loci identified by a multi-stage genome-wide association study.	Prostate cancer	6,621 European ancestry cases, 6,939 European ancestry controls	22,957 European ancestry cases, 23,234 European ancestry controls, 420 East Asian ancestry cases, 433 East Asian ancestry controls, 112 African American cases, 298 African American controls, 7,140 cases, 5,455 controls	6p21.33	CCHCR1	rs130067-G	0.21	3E-8		1.05	[1.02-1.09]	NR [2600000] (imputed)	N
603	chr6_dbb_hap3	2416984	2416985	rs1265108	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	CCHCR1	rs1265108-T	NR	1E-8		0.0172707	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
603	chr6_dbb_hap3	2416984	2416985	rs1265108	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	CCHCR1	rs1265108-T	NR	1E-12		0.0213867	[0.015-0.027] unit decrease	Affymetrix [321016] (imputed)	N
603	chr6_dbb_hap3	2416984	2416985	rs1265108	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	CCHCR1	rs1265108-T	NR	8E-15		0.0255848	[0.019-0.032] unit decrease	Affymetrix [323123] (imputed)	N
603	chr6_dbb_hap3	2418538	2418539	rs143334143	33307546	Pairo-Castineira E	2020-12-11	Nature	Genetic mechanisms of critical illness in Covid-19.	COVID-19 (critical illness vs population)	2,804 European ancestry cases, 2,415 European, South Asian and Hispanic or Latin American ancestry cases, 687,911 European ancestry controls, 477,741 European, South Asian and Hispanic or Latin American ancestry controls	NA	6p21.33		rs143334143-A	NR	2E-10		1.3	[1.27-1.48]	Illumina [NR] (imputed)	N
603	chr6_dbb_hap3	2419610	2419611	rs130065	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8 on CD28+ CD45RA+ CD8+ T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs130065-A	0.16421	1E-14		0.3127	[0.23-0.39] unit decrease	Illumina [17954496] (imputed)	N
603	chr6_dbb_hap3	2425456	2425457	rs9263789	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	TCF19	rs9263789-A	NR	3E-9		0.0228494	[0.015-0.03] unit increase	Affymetrix [321169] (imputed)	N
603	chr6_dbb_hap3	2425679	2425680	rs3130934	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	6p21.33		rs3130934-A	0.315939	3E-10		0.028368	[0.02-0.037] unit increase	NR [11722792] (imputed)	N
603	chr6_dbb_hap3	2425679	2425680	rs3130934	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	6p21.33		rs3130934-A	0.315939	3E-9		0.0263765	[0.018-0.035] unit increase	NR [11722792] (imputed)	N
603	chr6_dbb_hap3	2426432	2426433	rs7750641	33909500	Moll M	2021-04-28	Am J Physiol Lung Cell Mol Physiol	A Systematic Analysis of Protein-altering Exonic Variants in Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease	up to 31,465 European ancestry cases, up to 203,688 European ancestry controls, up to 1,413 African ancestry cases, up to 6,080 African ancestry controls, up to 287 East Asian ancestry cases, up to 7,484 East Asian ancestry controls, up to 61 Hispanic cases, up to 613 Hispanic controls	NA	6p21.33	TCF19	rs7750641-T	0.15	1E-12		1.11	[1.08 -1.14]	Illumina [at least 109036]	N
603	chr6_dbb_hap3	2426432	2426433	rs7750641	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.33	TCF19	rs7750641-T	0.1263	3E-58		3.35	[NR]	Illumina [242824]	N
603	chr6_dbb_hap3	2426738	2426739	rs2073721	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes (adjusted for BMI)	up to 48,286 European ancestry cases, up to 250,671 European ancestry controls	NA	6p21.33	MHC	rs2073721-G	0.742	6E-10		1.04	[1.03-1.06]	Affymetrix, Illumina [247470]	N
603	chr6_dbb_hap3	2426738	2426739	rs2073721	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes (adjusted for BMI)	48,286 European ancestry cases, 250,671 European ancestry controls, 33,126 African American, East Asian, Hispanic/Latino or South Asian cases, 120,161 African American, East Asian, Hispanic/Latino or South Asian controls	NA	6p21.33	MHC	rs2073721-G	0.749	2E-9		1.04	[1.02-1.05]	Affymetrix, Illumina [247470]	N
603	chr6_dbb_hap3	2426738	2426739	rs2073721	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes	up to 48,286 European ancestry cases, up to 250,671 European ancestry controls	NA	6p21.33	MHC	rs2073721-G	0.742	6E-9		1.04	[1.02-1.06]	Affymetrix, Illumina [247470]	N
603	chr6_dbb_hap3	2426738	2426739	rs2073721	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes	48,286 European ancestry cases, 250,671 European ancestry controls, 33,126 African American, East Asian, Hispanic/Latino or South Asian cases, 120,161 African American, East Asian, Hispanic/Latino or South Asian controls	NA	6p21.33	MHC	rs2073721-G	0.749	2E-10		1.04	[1.02-1.05]	Affymetrix, Illumina [247470]	N
603	chr6_dbb_hap3	2427715	2427716	rs1419881	25802187	Jiang DK	2015-04-28	Hepatology	Genetic variants in five novel loci including CFB and CD40 predispose to chronic hepatitis B.	Chronic hepatitis B infection	2,514 Chinese ancestry cases, 1,130 Chinese ancestry controls	6,600 Chinese ancestry cases, 8,127 Chinese ancestry controls	6p21.33	TCF19	rs1419881-G	0.55	3E-7		1.12	[1.08-1.18]	Illumina [3680900] (imputed)	N
603	chr6_dbb_hap3	2427715	2427716	rs1419881	23760081	Kim YJ	2013-06-10	Hum Mol Genet	A genome-wide association study identified new variants associated with the risk of chronic hepatitis B.	Chronic hepatitis B infection	400 Korean ancestry cases, 1,000 Korean ancestry controls	971 Korean ancestry cases, 1,938 Korean ancestry controls	6p21.33	TCF19	rs1419881-?	NR	1E-18		1.37	[1.23-1.52]	Illumina [719265]	N
603	chr6_dbb_hap3	2428567	2428568	rs182661945	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	6p21.33	NR	rs182661945-?	NR	2E-9		5.977	NR z score increase	Illumina [at least 830937] (imputed)	N
603	chr6_dbb_hap3	2429208	2429209	rs3130933	33649182	Penova M	2021-03-01	Proc Natl Acad Sci U S A	Genome wide association study of HTLV-1-associated myelopathy/tropical spastic paraparesis in the Japanese population.	HTLV-1 associated myelopathy	731 Japanese ancestry cases, 846 Japanese ancestry controls	NA	6p21.33		rs3130933-T	0.04	5E-9		2.44	[1.81-3.29]	Illumina [126394]	N
603	chr6_dbb_hap3	2432026	2432027	rs3130931	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	6p21.33	NR	rs3130931-C	0.6765	2E-32		0.0482	[0.04-0.056] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
603	chr6_dbb_hap3	2432026	2432027	rs3130931	21801394	Genin E	2011-07-29	Orphanet J Rare Dis	Genome-wide association study of Stevens-Johnson Syndrome and Toxic Epidermal Necrolysis in Europe.	Drug-induced Stevens-Johnson syndrome or toxic epidermal necrolysis (SJS/TEN)	424 European ancestry cases, 1,881 European ancestry controls	NA	6p21.33	POU5F1	rs3130931-C	0.69	8E-7		1.54	[1.29-1.84]	Illumina [268914]	N
603	chr6_dbb_hap3	2433128	2433129	rs185402687	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	6p21.33	POU5F1	rs185402687-C	0.0157	6E-14		0.1102721	[0.081-0.139] unit decrease	Affymetrix [~ 2500000] (imputed)	N
603	chr6_dbb_hap3	2433590	2433591	rs3130501	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	6p21.33	POU5F1	rs3130501-G	0.7833	6E-9	(EA)	0.0693	[0.046-0.093] unit increase	Affymetrix, Illumina [NR] (imputed)	N
603	chr6_dbb_hap3	2433590	2433591	rs3130501	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	6p21.33	POU5F1	rs3130501-G	0.7833	4E-12		0.063	[0.045-0.081] unit increase	Affymetrix, Illumina [NR] (imputed)	N
603	chr6_dbb_hap3	2433590	2433591	rs3130501	21801394	Genin E	2011-07-29	Orphanet J Rare Dis	Genome-wide association study of Stevens-Johnson Syndrome and Toxic Epidermal Necrolysis in Europe.	Drug-induced Stevens-Johnson syndrome or toxic epidermal necrolysis (SJS/TEN)	424 European ancestry cases, 1,881 European ancestry controls	NA	6p21.33	POU5F1	rs3130501-G	0.74	2E-8		1.74	[1.43-2.13]	Illumina [268914]	N
603	chr6_dbb_hap3	2433851	2433852	rs3132524	24509480	Mahajan A	2014-02-09	Nat Genet	Genome-wide trans-ancestry meta-analysis provides insight into the genetic architecture of type 2 diabetes susceptibility.	Type 2 diabetes	12,171 European ancestry cases, 56,862 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls	21,491 European ancestry cases, 55,647 European ancestry controls	6p21.33	TCF19, POU5F1	rs3132524-G		4E-9		1.07	[1.04-1.09]	Affymetrix, Illumina [2500000] (imputed)	N
603	chr6_dbb_hap3	2435248	2435249	rs1062630	28654678	Mandage R	2017-06-27	PLoS One	Genetic factors affecting EBV copy number in lymphoblastoid cell lines derived from the 1000 Genome Project samples.	Epstein-Barr virus copy number in lymphoblastoid cell lines	389 East Asian ancestry individuals, 189 South Asian ancestry individuals, 492 European ancestry individuals, 467 Sub-Saharan African ancestry individuals, 59 African American individuals, 157 Hispanic/Latino individuals	NA	6p21.33	POU5F1	rs1062630-?	NR	1E-6				NR [at least 880000]	N
603	chr6_dbb_hap3	2436592	2436593	rs879882	31935283	Du Z	2020-01-01	Blood Adv	A meta-analysis of genome-wide association studies of multiple myeloma among men and women of African ancestry.	Multiple myeloma	1,813 African American and African ancestry cases, 8,871 African American and African ancestry controls	NA	6p21.33	NR	rs879882-T	0.45	1E-6		1.2	[1.12-1.29]	Illumina [12683648] (imputed)	N
603	chr6_dbb_hap3	2436592	2436593	rs879882	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	6p21.33	MICA	rs879882-?	NR	2E-7	(Conditioned on rs2256183)		[NR]	Affymetrix, Illumina [2834208] (imputed)	N
603	chr6_dbb_hap3	2437187	2437188	rs1265159	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.33	intergenic	rs1265159-T	0.2191	4E-37		2.42	[NR]	Illumina [242824]	N
603	chr6_dbb_hap3	2437292	2437293	rs885950	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	6p21.33	POU5F1, HCG27, HLA	rs885950-C	0.42	7E-13		1.08	[1.07-1.09]	Illumina [at least 560000] (imputed)	N
603	chr6_dbb_hap3	2437881	2437882	rs1265158	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	POU5F1	rs1265158-G	NR	1E-8		0.0185854	[0.012-0.025] unit decrease	Affymetrix [323858] (imputed)	N
603	chr6_dbb_hap3	2437881	2437882	rs1265158	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	POU5F1	rs1265158-G	NR	3E-8		0.0179118	[0.012-0.024] unit decrease	Affymetrix [127266] (imputed)	N
603	chr6_dbb_hap3	2437881	2437882	rs1265158	28087736	Ludwig KU	2017-01-13	Hum Mol Genet	Imputation of orofacial clefting data identifies novel risk loci and sheds light on the genetic background of cleft lip ? cleft palate and cleft palate only.	Nonsyndromic cleft lip with or without cleft palate	399 European ancestry cases, 1,318 European ancestry controls, 666 European ancestry trios, 795 Asian trios	224 European ancestry cases, 921 European ancestry controls, 152 Mayan cases, 323 Mayan controls, 198 Middle Eastern cases, 391 Middle Eastern controls	6p21.33	NR	rs1265158-?		5E-6	(EA)			NR [8012124] (imputed)	N
603	chr6_dbb_hap3	2437881	2437882	rs1265158	28087736	Ludwig KU	2017-01-13	Hum Mol Genet	Imputation of orofacial clefting data identifies novel risk loci and sheds light on the genetic background of cleft lip ? cleft palate and cleft palate only.	Nonsyndromic cleft lip with or without cleft palate	399 European ancestry cases, 1,318 European ancestry controls, 666 European ancestry trios, 795 Asian trios	224 European ancestry cases, 921 European ancestry controls, 152 Mayan cases, 323 Mayan controls, 198 Middle Eastern cases, 391 Middle Eastern controls	6p21.33	NR	rs1265158-?		3E-6	(All)			NR [8012124] (imputed)	N
603	chr6_dbb_hap3	2438349	2438350	rs2269712	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.33		rs2269712-A	0.249	1E-10				Affymetrix [10369434] (imputed)	N
603	chr6_dbb_hap3	2438349	2438350	rs2269712	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	POU5F1	rs2269712-A	NR	2E-8		0.0181335	[0.012-0.024] unit decrease	Affymetrix [319769] (imputed)	N
603	chr6_dbb_hap3	2438622	2438623	rs116763857	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p21.33	PSORS1C3	rs116763857-G	0.027	1E-14		0.295	[0.22-0.37] unit decrease	Affymetrix, Illumina [7374092] (imputed)	N
603	chr6_dbb_hap3	2439385	2439386	rs3094188	23266558	Yamazaki K	2012-12-21	Gastroenterology	A genome-wide association study identifies 2 susceptibility Loci for Crohn's disease in a Japanese population.	Crohn's disease	372 Japanese ancestry cases,3,389 Japanese ancestry controls	Up to 1,151 Japanese ancestry cases, up to 15,800 Japanese ancestry controls	6p21.33	PSORS1C3	rs3094188-C	0.280	7E-7		1.61	[1.33-1.94]	Illumina [4929034] (imputed)	N
603	chr6_dbb_hap3	2439385	2439386	rs3094188	21801394	Genin E	2011-07-29	Orphanet J Rare Dis	Genome-wide association study of Stevens-Johnson Syndrome and Toxic Epidermal Necrolysis in Europe.	Drug-induced Stevens-Johnson syndrome or toxic epidermal necrolysis (SJS/TEN)	424 European ancestry cases, 1,881 European ancestry controls	NA	6p21.33	POU5F1	rs3094188-A	0.63	3E-8		1.59	[1.34-1.88]	Illumina [268914]	N
603	chr6_dbb_hap3	2440651	2440652	rs887466	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation GrimAge acceleration	34,467 European ancestry individuals	NA	6p21.33	NR	rs887466-A	0.3815	5E-10		0.1928	[0.13-0.25] unit decrease	Affymetrix, Illumina [7568149] (imputed)	N
603	chr6_dbb_hap3	2440722	2440723	rs3131018	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.33		rs3131018-A	0.369	3E-21				Affymetrix [10369434] (imputed)	N
603	chr6_dbb_hap3	2440722	2440723	rs3131018	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p21.33		rs3131018-A	0.369	2E-16				Affymetrix [10369434] (imputed)	N
603	chr6_dbb_hap3	2440722	2440723	rs3131018	21051598	Pereyra F	2010-11-04	Science	The major genetic determinants of HIV-1 control affect HLA class I peptide presentation.	HIV-1 control	516 European cases, 1,196 European controls, 341 African American cases, 892 African American controls, 117 Hispanic cases, 560 Hispanic controls	NA	6p21.33	PSORS1C3	rs3131018-C	0.625	4E-16	(EA)	2.1	[NR]	Illumina [1384048] (imputed)	N
603	chr6_dbb_hap3	2441777	2441778	rs9404937	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	POU5F1, PSORS1C3	rs9404937-A	NR	7E-13		0.0235486	[0.017-0.03] unit decrease	Affymetrix [323123] (imputed)	N
603	chr6_dbb_hap3	2444617	2444618	rs3130507	29227965	Pilling LC	2017-12-01	Aging (Albany NY)	Human longevity: 25 genetic loci associated in 389,166 UK biobank participants.	Parental longevity (mother's attained age)	412,937 British ancestry individuals	NA	6p21.33	PSORS1C3	rs3130507-G	0.72	2E-10		0.0155	[0.011-0.02] unit decrease	Affymetrix [11535925] (imputed)	N
603	chr6_dbb_hap3	2444617	2444618	rs3130507	29227965	Pilling LC	2017-12-01	Aging (Albany NY)	Human longevity: 25 genetic loci associated in 389,166 UK biobank participants.	Parental longevity (combined parental attained age, Martingale residuals)	389,166 British ancestry individuals	NA	6p21.33	PSORS1C3	rs3130507-G	NR	4E-6			[NR]	Affymetrix [11535925] (imputed)	N
603	chr6_dbb_hap3	2451409	2451410	rs7753892	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GNLY	5,366 Icelandic ancestry individuals	NA	6p21.33		rs7753892-C	0.3652	5E-15		0.154032	[0.12-0.19] unit increase	Illumina [7506463] (imputed)	N
603	chr6_dbb_hap3	2451409	2451410	rs7753892	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GNLY	5,366 Icelandic ancestry individuals	NA	6p21.33		rs7753892-C	0.3652	2E-14		0.15056	[0.11-0.19] unit increase	Illumina [7506463] (imputed)	N
603	chr6_dbb_hap3	2451509	2451510	rs13203101	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p21.33	NR	rs13203101-?	NR	3E-15		0.1435	[0.11-0.18] unit decrease	Illumina [at least 560000] (imputed)	N
603	chr6_dbb_hap3	2451581	2451582	rs3130458	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	POU5F1	rs3130458-T	NR	6E-12		0.0238773	[0.017-0.031] unit decrease	Affymetrix [323858] (imputed)	N
603	chr6_dbb_hap3	2451581	2451582	rs3130458	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	POU5F1	rs3130458-T	NR	3E-11		0.0230527	[0.016-0.03] unit decrease	Affymetrix [127266] (imputed)	N
603	chr6_dbb_hap3	2451967	2451968	rs6922051	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	POU5F1	rs6922051-C	NR	7E-12		0.0225553	[0.016-0.029] unit decrease	Affymetrix [323123] (imputed)	N
603	chr6_dbb_hap3	2452932	2452933	rs1265181	30921485	Bejaoui Y	2019-03-28	Exp Dermatol	Genome-wide association study of psoriasis in an Egyptian population.	Psoriasis	215 Egyptian ancestry cases, 416 Egyptian ancestry controls	321 Egyptian ancestry cases, 253 Egyptian ancestry controls	6p21.33	HCG27	rs1265181-?	NR	1E-10		2.0	[1.62-2.45]	Illumina [312245]	N
603	chr6_dbb_hap3	2452932	2452933	rs1265181	19169255	Zhang XJ	2009-01-25	Nat Genet	Psoriasis genome-wide association study identifies susceptibility variants within LCE gene cluster at 1q21.	Psoriasis	1,139 Han Chinese ancestry cases, 1,132 Han Chinese ancestry controls	5,721 Chinese ancestry cases, 7,340 Chinese ancestry controls	6p21.33	MHC	rs1265181-?	NR	2E-208		22.62		Illumina [494902]	N
603	chr6_dbb_hap3	2453188	2453189	rs9368661	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	6p21.33	NR	rs9368661-T	0.258577	1E-19		0.02376896	[0.019-0.029] unit increase	Affymetrix [93095623] (imputed)	N
603	chr6_dbb_hap3	2453335	2453336	rs9263850	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG299F13.17	rs9263850-G	NR	1E-9		0.0190638	[0.013-0.025] unit decrease	Affymetrix [321016] (imputed)	N
603	chr6_dbb_hap3	2453335	2453336	rs9263850	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG299F13.17	rs9263850-G	NR	5E-16		0.0275644	[0.021-0.034] unit decrease	Affymetrix [323123] (imputed)	N
603	chr6_dbb_hap3	2455331	2455332	rs9295958	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG299F13.17	rs9295958-A	NR	1E-10		0.0250366	[0.017-0.033] unit decrease	Affymetrix [323123] (imputed)	N
603	chr6_dbb_hap3	2455708	2455708	rs145171179	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	6p21.33	XXbac-BPG299F13.17	rs145171179-GA	0.212169	4E-9		0.020656763	[0.014-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
603	chr6_dbb_hap3	2455780	2455781	rs9263861	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	6p21.33	HLA region	rs9263861-?	NR	3E-8	(EA)			Affymetrix, Illumina [10537485] (imputed)	N
603	chr6_dbb_hap3	2455780	2455781	rs9263861	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	6p21.33	HLA region	rs9263861-?	NR	3E-8				Affymetrix, Illumina [10537485] (imputed)	N
603	chr6_dbb_hap3	2455979	2455980	rs7741829	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	6p21.33	XXbac-BPG299F13.17	rs7741829-C	0.289979	2E-13		0.019235091	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
603	chr6_dbb_hap3	2456167	2456168	rs7742179	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG299F13.17	rs7742179-A	NR	3E-13		0.0215095	[0.016-0.027] unit decrease	Affymetrix [321016] (imputed)	N
603	chr6_dbb_hap3	2456167	2456168	rs7742179	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG299F13.17	rs7742179-A	NR	9E-21		0.0299448	[0.024-0.036] unit decrease	Affymetrix [323123] (imputed)	N
603	chr6_dbb_hap3	2456959	2456961	rs550239034	31577861	Dai J	2019-10-31	Int J Cancer	Genome-wide association study of INDELs identified four novel susceptibility loci associated with lung cancer risk.	Lung cancer	20,871 European ancestry cases, 15,971 European ancestry controls, 2,331 Chinese ancestry cases, 3,077 Chinese ancestry controls	NA	6p21.33	POU5F1	rs550239034-D	0.25	2E-7		0.92	[0.89-0.95]	Illumina [484196]	N
603	chr6_dbb_hap3	2461113	2461114	rs28749551	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	6p21.33	XXbac-BPG299F13.17	rs28749551-C	0.189749	9E-23		0.029464645	[0.024-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
603	chr6_dbb_hap3	2461113	2461114	rs28749551	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	6p21.33	XXbac-BPG299F13.17	rs28749551-C	0.1902	8E-18		0.03930922	[0.03-0.048] unit decrease	Affymetrix [~ 2500000] (imputed)	N
603	chr6_dbb_hap3	2461920	2461921	rs28362333	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	6p21.33		rs28362333-C	0.530396419	7E-20		0.08448383	[0.066-0.103] unit increase	Illumina [13429769] (imputed)	N
603	chr6_dbb_hap3	2462975	2462976	rs28362345	31935283	Du Z	2020-01-01	Blood Adv	A meta-analysis of genome-wide association studies of multiple myeloma among men and women of African ancestry.	Multiple myeloma	1,813 African American and African ancestry cases, 8,871 African American and African ancestry controls	NA	6p21.33	NR	rs28362345-T	0.7	6E-7		1.24	[1.14-1.34]	Illumina [12683648] (imputed)	N
603	chr6_dbb_hap3	2465168	2465169	rs6903896	20585627	Eriksson N	2010-06-24	PLoS Genet	Web-based, participant-driven studies yield novel genetic associations for common traits.	Common traits (Other)	9,126 European ancestry individuals	NA	6p21.33	NR	rs6903896-?	NR	6E-7	(sneeze)			Illumina [535076]	N
603	chr6_dbb_hap3	2465536	2465537	rs9263868	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p21.33	NR	rs9263868-?	NR	4E-21		0.1525	[0.12-0.18] unit increase	Illumina [at least 560000] (imputed)	N
603	chr6_dbb_hap3	2465841	2465842	rs138864366	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs138864366-C	0.027	4E-32	(Cyclic AMP-responsive element-binding protein 3-like protein 4, CREB3L4.11308.8.3)	1.03	[0.85-1.21] unit increase	Affymetrix [10572788] (imputed)	N
603	chr6_dbb_hap3	2466710	2466711	rs28362359	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs28362359-C	0.875	4E-34				Affymetrix [10369434] (imputed)	N
603	chr6_dbb_hap3	2467150	2467151	rs9263869	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCG27	rs9263869-C	NR	1E-8		0.0173241	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
603	chr6_dbb_hap3	2467150	2467151	rs9263869	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HCG27	rs9263869-C	NR	3E-8		0.0168281	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
603	chr6_dbb_hap3	2467150	2467151	rs9263869	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCG27	rs9263869-C	NR	3E-10		0.0208071	[0.014-0.027] unit decrease	Affymetrix [323123] (imputed)	N
603	chr6_dbb_hap3	2467267	2467268	rs1793899	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCG27	rs1793899-A	NR	2E-14		0.0870835	[0.065-0.109] unit decrease	Affymetrix [321016] (imputed)	N
603	chr6_dbb_hap3	2467364	2467365	rs9366770	30980028	de Kovel CGF	2019-04-12	Sci Rep	The molecular genetics of hand preference revisited.	Handedness (Right-handed vs. non-right-handed)	293,857 British ancestry cases, 37,180 British ancestry controls	NA	6p21.33	HCG27	rs9366770-?	NR	2E-9				Affymetrix [~ 15000000] (imputed)	N
603	chr6_dbb_hap3	2467664	2467665	rs9263871	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	6p21.33	NR	rs9263871-?		2E-14	(MICA)			Illumina [NR]	N
603	chr6_dbb_hap3	2467664	2467665	rs9263871	24925725	Chung SA	2014-06-12	J Am Soc Nephrol	Lupus nephritis susceptibility loci in women with systemic lupus erythematosus.	Lupus nephritis in systemic lupus erythematosus	588 European ancestry cases, 1,412 European ancestry controls	NA	6p21.33	HCG27	rs9263871-G	NR	9E-6	(Dominant)	1.7	[1.35-2.13]	Affymetrix, Illumina [1621689] (imputed)	N
603	chr6_dbb_hap3	2468050	2468051	rs9263875	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HCG27	rs9263875-G	NR	6E-11		0.0190363	[0.013-0.025] unit increase	Affymetrix [321169] (imputed)	N
603	chr6_dbb_hap3	2469078	2469078	rs146660653	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCG27	rs146660653-ATCTAT	NR	4E-8		0.0193068	[0.012-0.026] unit decrease	Affymetrix [323123] (imputed)	N
603	chr6_dbb_hap3	2469287	2469288	rs3132510	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Diastolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	6p21.33	HCG27	rs3132510-C	0.6478	3E-14		0.3056	[0.23-0.38] mmHg increase	Affymetrix [NR] (imputed)	N
603	chr6_dbb_hap3	2469287	2469288	rs3132510	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p21.33	NR	rs3132510-?	NR	1E-7		5.296	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
603	chr6_dbb_hap3	2469287	2469288	rs3132510	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p21.33	NR	rs3132510-?	NR	4E-14		0.2588	[0.19-0.32] unit decrease	Illumina [at least 560000] (imputed)	N
603	chr6_dbb_hap3	2469489	2469490	rs3887381	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCG27	rs3887381-T	NR	8E-14		0.0210107	[0.015-0.027] unit increase	Affymetrix [319769] (imputed)	N
603	chr6_dbb_hap3	2469489	2469490	rs3887381	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HCG27	rs3887381-T	NR	2E-12		0.0197787	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
603	chr6_dbb_hap3	2469489	2469490	rs3887381	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCG27	rs3887381-T	NR	3E-20		0.0282671	[0.022-0.034] unit decrease	Affymetrix [323123] (imputed)	N
603	chr6_dbb_hap3	2471661	2471662	rs2894181	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCG27	rs2894181-G	NR	5E-9		0.0164875	[0.011-0.022] unit decrease	Affymetrix [321016] (imputed)	N
603	chr6_dbb_hap3	2471892	2471893	rs28744239	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p21.33	NR	rs28744239-C	0.147	5E-9	(IFNAR2_of_CD20p)			Illumina [5084123] (imputed)	N
603	chr6_dbb_hap3	2472064	2472065	rs185386680	26599303	Cheung CL	2016-01-12	Clin Pharmacol Ther	HLA-B*38:02:01 predicts carbimazole/methimazole-induced agranulocytosis.	Antithyroid drug-induced agranulocytosis	20 Southern Chinese ancestry cases, 775 East Asian ancestry controls	4 Southern Chinese ancestry cases, 387 East Asian ancestry controls	6p21.33	HLA-B*38:02:01	rs185386680-?	NR	4E-29		24.7	9.2-66.3	Illumina [5339940] (imputed)	N
603	chr6_dbb_hap3	2473080	2473081	rs1619179	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs for peptic ulcer and gastro-oesophageal reflux disease)	53,137 European ancestry cases, 79,230 European ancestry controls, 53,363 East Asian ancestry cases, 125,363 East Asian ancestry controls	NA	6p21.33		rs1619179-C	NR	4E-11		0.0701	[0.049-0.091] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
603	chr6_dbb_hap3	2473080	2473081	rs1619179	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (drugs for peptic ulcer and gastro-oesophageal reflux disease)	53,137 European ancestry cases, 79,230 European ancestry controls	NA	6p21.33	HCG27	rs1619179-C	0.154861	4E-11		0.07005687	[0.049-0.091] unit decrease	Affymetrix [7288503] (imputed)	N
603	chr6_dbb_hap3	2473080	2473081	rs1619179	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p21.33	NR	rs1619179-?	NR	3E-10		0.0882	[0.061-0.116] unit decrease	Illumina [at least 560000] (imputed)	N
603	chr6_dbb_hap3	2473380	2473381	rs4410769	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCG27	rs4410769-T	NR	2E-9		0.0188767	[0.013-0.025] unit increase	Affymetrix [323858] (imputed)	N
603	chr6_dbb_hap3	2473380	2473381	rs4410769	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HCG27	rs4410769-T	NR	3E-8		0.0173066	[0.011-0.023] unit increase	Affymetrix [127266] (imputed)	N
603	chr6_dbb_hap3	2474644	2474645	rs9501519	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCG27	rs9501519-T	NR	3E-11		0.0187496	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
603	chr6_dbb_hap3	2474644	2474645	rs9501519	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HCG27	rs9501519-T	NR	1E-10		0.0181428	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
603	chr6_dbb_hap3	2474792	2474793	rs9501520	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCG27	rs9501520-C	NR	2E-10		0.0200324	[0.014-0.026] unit increase	Affymetrix [323858] (imputed)	N
603	chr6_dbb_hap3	2474792	2474793	rs9501520	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HCG27	rs9501520-C	NR	6E-10		0.0194184	[0.013-0.026] unit increase	Affymetrix [127266] (imputed)	N
603	chr6_dbb_hap3	2475335	2475336	rs17191272	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCG27	rs17191272-C	NR	3E-11		0.020396	[0.014-0.026] unit decrease	Affymetrix [323123] (imputed)	N
603	chr6_dbb_hap3	2476105	2476106	rs36039697	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.33		rs36039697-G	0.748	2E-17				Affymetrix [10369434] (imputed)	N
603	chr6_dbb_hap3	2481329	2481330	rs3869109	22319020	Davies RW	2012-02-07	Circ Cardiovasc Genet	A genome-wide association study for coronary artery disease identifies a novel susceptibility locus in the major histocompatibility complex.	Coronary heart disease	7,123 European ancestry cases, 6,826 European ancestry controls	5,211 European ancestry cases, 5,821 European ancestry controls	6p21.33	HCG27, HLA-C	rs3869109-G	NR	1E-9		1.14	[NR]	Affymetrix [~ 5000000] (imputed)	N
603	chr6_dbb_hap3	2483160	2483161	rs9263963	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs9263963-T	0.113293342563644	1E-6	(IGP23)	0.2567	[0.15-0.36] unit increase	Illumina [~ 2500000] (imputed)	N
603	chr6_dbb_hap3	2484209	2484210	rs3130467	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (mother's age at death or mother's attained age)	up to 699,000 individuals	NA	6p21.33	NR	rs3130467-G		3E-7				Illumina [458525]	N
603	chr6_dbb_hap3	2488411	2488412	rs9263988	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.33		rs9263988-C	0.937	6E-19				Affymetrix [10369434] (imputed)	N
603	chr6_dbb_hap3	2489892	2489893	rs9263993	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	6p21.33	HLA region	rs9263993-?	NR	9E-9	(EA)			Affymetrix, Illumina [10537485] (imputed)	N
603	chr6_dbb_hap3	2489892	2489893	rs9263993	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	6p21.33	HLA region	rs9263993-?	NR	2E-7				Affymetrix, Illumina [10537485] (imputed)	N
603	chr6_dbb_hap3	2489923	2489924	rs6904670	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28- CD8+ T cell %CD8+ T cell	3,440 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs6904670-G	0.64142	3E-8		0.1458	[0.094-0.197] unit decrease	Illumina [18357815] (imputed)	N
604	chr6_dbb_hap3	2492340	2492341	rs6928399	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG299F13.16	rs6928399-T	NR	7E-12		0.0204256	[0.015-0.026] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_dbb_hap3	2492340	2492341	rs6928399	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG299F13.16	rs6928399-T	NR	9E-11		0.0193191	[0.013-0.025] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_dbb_hap3	2492340	2492341	rs6928399	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG299F13.16	rs6928399-T	NR	7E-11		0.0196879	[0.014-0.026] unit increase	Affymetrix [321169] (imputed)	N
604	chr6_dbb_hap3	2493118	2493119	rs7769059	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	6p21.33	HCG27	rs7769059-G	0.716625	1E-12		0.0150833	[0.011-0.019] unit increase	Affymetrix [NR] (imputed)	N
604	chr6_dbb_hap3	2494389	2494390	rs3134783	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Sarcoidosis	1,718 European ancestry cases, 484,955 European ancestry controls, 220 East Asian ancestry cases, 177,667 East Asian ancestry controls	NA	6p21.33		rs3134783-A	NR	6E-9		0.2583	[0.17-0.35] unit increase	Affymetrix, Illumina [25845061] (imputed)	N
604	chr6_dbb_hap3	2494640	2494641	rs3130941	24324648	Yatagai Y	2013-12-04	PLoS One	Genome-wide association study for levels of total serum IgE identifies HLA-C in a Japanese population.	IgE levels	967 Japanese ancestry individuals, 213 Japanese ancestry asthmatic individuals	1,894 Japanese ancestry individuals, 580 Japanese ancestry asthmatic individuals	6p21.33	HCG27, HLA-C	rs3130941-C	0.25	1E-10		0.098	unit increase	Illumina [479940]	N
604	chr6_dbb_hap3	2496329	2496330	rs3130473	29534301	Nishida N	2018-03-13	Hepatology	Key HLA-DRB1-DQB1 haplotypes and role of the BTNL2 gene for response to a hepatitis B vaccine.	Response to hepatitis B vaccine	107 Japanese ancestry low responder individuals, 351 Japanese ancestry intermediate responder individuals, 735 Japanese ancestry high responder individuals	NA	6p21.33	HLA-C	rs3130473-?		8E-6		0.128	unit decrease	Affymetrix [427664]	N
604	chr6_dbb_hap3	2496586	2496587	rs3869114	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.33		rs3869114-G	NR	2E-7		1.204	[1.122-1.292]	Affymetrix [7846216] (imputed)	N
604	chr6_dbb_hap3	2496886	2496887	rs11967684	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	6p21.33	intergenic	rs11967684-A	0.3428	2E-24		0.03858957	[0.031-0.046] unit increase	Affymetrix [~ 2500000] (imputed)	N
604	chr6_dbb_hap3	2496886	2496887	rs11967684	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	6p21.33	intergenic	rs11967684-A	0.3428	1E-29		0.04284561	[0.035-0.05] unit increase	Affymetrix [~ 2500000] (imputed)	N
604	chr6_dbb_hap3	2497890	2497891	rs7757622	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG299F13.16	rs7757622-C	NR	2E-16		0.023531	[0.018-0.029] unit decrease	Affymetrix [321169] (imputed)	N
604	chr6_dbb_hap3	2501776	2501777	rs3869115	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	46,511 Asian ancestry cases, 169,776 Asian ancestry controls	NA	6p21.33	NR	rs3869115-G	0.1981	1E-17		0.1004	[0.077-0.123] unit decrease	Affymetrix, Illumina [1077427] (imputed)	N
604	chr6_dbb_hap3	2501776	2501777	rs3869115	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p21.33	HCG27, HLA-C	rs3869115-C	0.06	6E-7	(Turkish)	2.23	[1.62-3.08]	Illumina [up to 547389]	N
604	chr6_dbb_hap3	2502068	2502069	rs3134770	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p21.33	NR	rs3134770-?	NR	8E-8		0.0723	[0.046-0.099] unit increase	Illumina [at least 560000] (imputed)	N
604	chr6_dbb_hap3	2503286	2503287	rs3130685	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Effector Memory CD8+ T cell Absolute Count	3,395 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs3130685-T	0.34389	2E-8		0.1803	[0.12-0.24] unit increase	Illumina [18332267] (imputed)	N
604	chr6_dbb_hap3	2503286	2503287	rs3130685	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8+ T cell Absolute Count	3,652 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs3130685-T	0.34283	4E-11		0.1887	[0.13-0.24] unit increase	Illumina [18427348] (imputed)	N
604	chr6_dbb_hap3	2503286	2503287	rs3130685	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8+ T cell %leukocyte	3,668 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs3130685-T	0.34283	1E-9		0.1801	[0.12-0.24] unit increase	Illumina [18430788] (imputed)	N
604	chr6_dbb_hap3	2503286	2503287	rs3130685	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28- CD8+ T cell Absolute Count	3,408 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs3130685-T	0.3439	3E-10		0.1894	[0.13-0.25] unit increase	Illumina [18340221] (imputed)	N
604	chr6_dbb_hap3	2503286	2503287	rs3130685	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD127- CD8+ T cell Absolute Count	3,371 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs3130685-T	0.34485	9E-10		0.1905	[0.13-0.25] unit increase	Illumina [18321960] (imputed)	N
604	chr6_dbb_hap3	2504835	2504836	rs9461666	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6p21.33		rs9461666-G	0.021815	7E-10		0.0478569	[0.033-0.063] unit increase	Affymetrix [93095623] (imputed)	N
604	chr6_dbb_hap3	2505124	2505125	rs5875302	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	349,856 European ancestry individuals, 91,908 East Asian ancestry individuals	NA	6p21.33		rs5875302-C	NR	9E-24		0.046	[0.037-0.055] unit decrease	Affymetrix, Illumina [20529536] (imputed)	N
604	chr6_dbb_hap3	2505657	2505658	rs3132497	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG299F13.16	rs3132497-G	NR	3E-9		0.0221455	[0.015-0.029] unit increase	Affymetrix [323123] (imputed)	N
604	chr6_dbb_hap3	2508818	2508819	rs117506082	32072174	Okamoto D	2020-02-19	Inflamm Bowel Dis	Genetic Analysis of Ulcerative Colitis in Japanese Individuals Using Population-specific SNP Array.	Ulcerative colitis	601 Japanese ancestry cases, 1,962 Japanese ancestry controls	1,075 Japanese ancestry cases, 419 Japanese ancestry controls	6p21.33	HLA	rs117506082-G	NR	4E-88		3.39	[2.99-3.83]	NR [4760823] (imputed)	N
604	chr6_dbb_hap3	2508910	2508911	rs1639106	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG299F13.16	rs1639106-T	NR	9E-12		0.0601547	[0.043-0.077] unit decrease	Affymetrix [321016] (imputed)	N
604	chr6_dbb_hap3	2509123	2509124	rs117759870	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs117759870-?		6E-8		1.06	[1.04-1.09]	Illumina [7645193] (imputed)	N
604	chr6_dbb_hap3	2514581	2514582	rs3130427	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	6p21.33		rs3130427-G	0.594789	2E-27		0.029043514	[0.024-0.034] unit increase	Affymetrix [93095623] (imputed)	N
604	chr6_dbb_hap3	2515555	2515556	rs55839536	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs55839536-A	NR	2E-8		0.023416	[0.015-0.032] unit decrease	Affymetrix [321016] (imputed)	N
604	chr6_dbb_hap3	2515838	2515839	rs7449932	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	6p21.33		rs7449932-C	0.223006	2E-9		0.0272642	[0.018-0.036] unit increase	NR [11722792] (imputed)	N
604	chr6_dbb_hap3	2516384	2516385	rs3130436	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	6p21.33	NR	rs3130436-?	NR	4E-7		0.0523	[0.032-0.072] unit decrease	Illumina [at least 560000] (imputed)	N
604	chr6_dbb_hap3	2516384	2516385	rs3130436	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	6p21.33	HCG27, HLA-C	rs3130436-?	NR	4E-7		1.0537407	[1.03-1.08]	Illumina [13754664] (imputed)	N
604	chr6_dbb_hap3	2516624	2516625	rs3130439	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LILRB1	5,363 Icelandic ancestry individuals	NA	6p21.33		rs3130439-G	0.4964	8E-23		0.179906	[0.14-0.22] unit decrease	Illumina [7506463] (imputed)	N
604	chr6_dbb_hap3	2516900	2516901	rs17197839	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-C	rs17197839-A	NR	1E-8		0.0267548	[0.018-0.036] unit decrease	Affymetrix [323123] (imputed)	N
604	chr6_dbb_hap3	2516900	2516901	rs17197839	33549134	Adolphe C	2021-02-06	Genome Med	Genetic and functional interaction network analysis reveals global enrichment of regulatory T cell genes influencing basal cell carcinoma susceptibility.	Basal cell carcinoma	17,416 European ancestry cases, 375,455 European ancestry controls	NA	6p21.33	HLA-C	rs17197839-A	0.118172	3E-11		0.1165139	[0.082-0.151] unit decrease	Affymetrix [7260263] (imputed)	N
604	chr6_dbb_hap3	2516952	2516953	rs1793892	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs1793892-C	NR	2E-9		0.0258258	[0.017-0.034] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_dbb_hap3	2516952	2516953	rs1793892	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-C	rs1793892-C	NR	3E-9		0.0256321	[0.017-0.034] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_dbb_hap3	2516970	2516971	rs17191538	33574277	Kawai Y	2021-02-11	NPJ Genom Med	Mapping of susceptible variants for cold medicine-related Stevens-Johnson syndrome by whole-genome resequencing.	Cold medicine-related Stevens-Johnson syndrome/toxic epidermal necrolysis (SJS/TEN) with severe ocular complications	133 Japanese ancestry cases, 418 Japanese ancestry controls	NA	6p21.33		rs17191538-G	0.2231	7E-7		2.483		Illumina [7608150]	N
604	chr6_dbb_hap3	2517269	2517270	rs3095254	25096241	Keller MF	2014-08-05	Hum Mol Genet	Trans-ethnic meta-analysis of white blood cell phenotypes.	Monocyte count	9,810 Japanese ancestry individuals, 16,550 European ancestry individuals, 7,369 African American individuals	NA	6p21.33	MHC	rs3095254-C	0.461	8E-9	(Japanese)	0.035	[0.023-0.047] unit increase	Illumina [NR] (imputed)	N
604	chr6_dbb_hap3	2517269	2517270	rs3095254	21738478	Okada Y	2011-06-30	PLoS Genet	Identification of nine novel loci associated with white blood cell subtypes in a Japanese population.	White blood cell types	8,794 Japanese ancestry individuals	5,998 Japanese ancestry individuals	6p21.33	MHC	rs3095254-C	0.46	6E-11	(monocyte count)	0.074	[0.05-0.09] unit increase	Illumina [2178645] (imputed)	N
604	chr6_dbb_hap3	2517783	2517784	rs1793889	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.33	CCHCR1, CDSN, HCG27, HLA-C, POU5F1, PSORS1C1, PSORS1C2, PSORS1C3, TCF19	rs1793889-?		1E-11		1.0869565	[1.06-1.11]	Affymetrix, Illumina [NR]	N
604	chr6_dbb_hap3	2520258	2520259	rs9264277	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.33		rs9264277-T	0.367	2E-13				Affymetrix [10369434] (imputed)	N
604	chr6_dbb_hap3	2520258	2520259	rs9264277	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.33		rs9264277-T	0.367	4E-8				Affymetrix [10369434] (imputed)	N
604	chr6_dbb_hap3	2520258	2520259	rs9264277	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.33		rs9264277-T	0.367	2E-36				Affymetrix [10369434] (imputed)	N
604	chr6_dbb_hap3	2520258	2520259	rs9264277	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	6p21.33		rs9264277-T	0.367	1E-9				Affymetrix [10369434] (imputed)	N
604	chr6_dbb_hap3	2520258	2520259	rs9264277	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs9264277-T	0.367	6E-12				Affymetrix [10369434] (imputed)	N
604	chr6_dbb_hap3	2520308	2520309	rs201871433	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	6p21.33		rs201871433-C	0.598843295	3E-14		0.080714226	[0.06-0.101] unit increase	Illumina [13134967] (imputed)	N
604	chr6_dbb_hap3	2522360	2522361	rs2440367	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs2440367-T	NR	4E-8		0.0177003	[0.011-0.024] unit increase	Affymetrix [321016] (imputed)	N
604	chr6_dbb_hap3	2522827	2522828	rs150543164	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	6p21.33	NR	rs150543164-C	0.971256	7E-11		0.0420252	[0.029-0.055] unit decrease	NR [NR]	N
604	chr6_dbb_hap3	2523776	2523777	rs9264354	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	6p21.33		rs9264354-T	0.225	2E-41				Affymetrix [10369434] (imputed)	N
604	chr6_dbb_hap3	2523777	2523778	rs9264355	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs9264355-T	NR	2E-11		0.0253701	[0.018-0.033] unit increase	Affymetrix [321016] (imputed)	N
604	chr6_dbb_hap3	2523948	2523949	rs6939900	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	6p21.33		rs6939900-C	0.644363	2E-13		0.0298309	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
604	chr6_dbb_hap3	2523948	2523949	rs6939900	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	6p21.33		rs6939900-C	0.644357	3E-11		0.0278375	[0.02-0.036] unit decrease	NR [11722792] (imputed)	N
604	chr6_dbb_hap3	2523948	2523949	rs6939900	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.33		rs6939900-T	0.35467	3E-26		0.03356077	[0.027-0.04] unit increase	Affymetrix [93095623] (imputed)	N
604	chr6_dbb_hap3	2524131	2524132	rs17191797	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	6p21.33	intergenic	rs17191797-G	0.0881	1E-10		0.04047984	[0.028-0.053] unit decrease	Affymetrix [~ 2500000] (imputed)	N
604	chr6_dbb_hap3	2525142	2525143	rs2844626	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Varicose veins	22,037 European ancestry cases, 437,665 European ancestry controls, 474 East Asian ancestry cases, 178,252 East Asian ancestry controls	NA	6p21.33		rs2844626-T	NR	1E-10		0.0734	[0.051-0.096] unit decrease	Affymetrix, Illumina [25842955] (imputed)	N
604	chr6_dbb_hap3	2525313	2525314	rs9264408	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs9264408-G	NR	5E-13		0.0253984	[0.019-0.032] unit decrease	Affymetrix [319769] (imputed)	N
604	chr6_dbb_hap3	2525313	2525314	rs9264408	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-C	rs9264408-G	NR	3E-12		0.0245478	[0.018-0.031] unit decrease	Affymetrix [319769] (imputed)	N
604	chr6_dbb_hap3	2525523	2525524	rs9264413	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	6p21.33	intergenic	rs9264413-T	0.8098	4E-40		0.0600596	[0.051-0.069] unit decrease	Affymetrix [~ 2500000] (imputed)	N
604	chr6_dbb_hap3	2525586	2525587	rs17192134	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	6p21.33		rs17192134-G	0.916	3E-52				Affymetrix [10369434] (imputed)	N
604	chr6_dbb_hap3	2525586	2525587	rs17192134	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p21.33	NR	rs17192134-T	0.084521	2E-25		0.048713	[0.04-0.058] unit increase	Affymetrix [93095623] (imputed)	N
604	chr6_dbb_hap3	2526030	2526031	rs17192225	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Prostate cancer	7,438 White British ancestry cases, 118,206 White British ancestry controls	NA	6p21.33		rs17192225-?	NR	2E-6		1.12175	[1.07-1.17]	NR [680312]	N
604	chr6_dbb_hap3	2526309	2526310	rs9357120	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	91,908 East Asian ancestry individuals	NA	6p21.33		rs9357120-A	0.563923	1E-31		0.0533207	[0.044-0.062] unit decrease	Illumina [13469940] (imputed)	N
604	chr6_dbb_hap3	2526309	2526310	rs9357120	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	81,042 East Asian ancestry individuals	NA	6p21.33	NR	rs9357120-T	0.42999	6E-32		0.058958	[0.049-0.069] SD units increase	Affymetrix, Illumina [16286709] (imputed)	N
604	chr6_dbb_hap3	2527580	2527581	rs2853961	31080455	Fatumo S	2019-04-26	Front Genet	Complimentary Methods for Multivariate Genome-Wide Association Study Identify New Susceptibility Genes for Blood Cell Traits.	Blood cell traits (multivariate analysis)	up to 6,407 Sub-Saharan African ancestry individuals	NA	6p21.33	HLA-C	rs2853961-?	NR	4E-8				Illumina [20594536] (imputed)	N
604	chr6_dbb_hap3	2527702	2527703	rs3130542	25802187	Jiang DK	2015-04-28	Hepatology	Genetic variants in five novel loci including CFB and CD40 predispose to chronic hepatitis B.	Chronic hepatitis B infection	2,514 Chinese ancestry cases, 1,130 Chinese ancestry controls	6,600 Chinese ancestry cases, 8,127 Chinese ancestry controls	6p21.33	HLA-C	rs3130542-A	0.16	9E-7		1.17	[1.10-1.24]	Illumina [3680900] (imputed)	N
604	chr6_dbb_hap3	2527702	2527703	rs3130542	24162738	Hu Z	2013-10-27	Nat Genet	New loci associated with chronic hepatitis B virus infection in Han Chinese.	Hepatitis B	951 Han Chinese ancestry HBV carrier cases, 937 Han Chinese ancestry HBV cleared controls	4,230 Chinese ancestry HBV carrier cases, 3,051 Chinese ancestry HBV cleared controls, 2,622 Chinese ancestry controls	6p21.33	HLA-C	rs3130542-A	0.13	9E-14		1.33	[1.23-1.44]	Illumina [490610]	N
604	chr6_dbb_hap3	2528043	2528044	rs2524108	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs2524108-G	NR	1E-9		0.0191519	[0.013-0.025] unit decrease	Affymetrix [319769] (imputed)	N
604	chr6_dbb_hap3	2528043	2528044	rs2524108	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-C	rs2524108-G	NR	4E-9		0.0186193	[0.012-0.025] unit decrease	Affymetrix [319769] (imputed)	N
604	chr6_dbb_hap3	2528043	2528044	rs2524108	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.33	HLA-C	rs2524108-G	0.273435	6E-44		0.050841797	[0.044-0.058] unit decrease	Affymetrix [93095623] (imputed)	N
604	chr6_dbb_hap3	2528164	2528165	rs2844623	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	6p21.33	POU5F1, TCF19	rs2844623-C	0.78	1E-17		1.1	1.08-1.12	Illumina [12557761] (imputed)	N
604	chr6_dbb_hap3	2528445	2528446	rs2524106	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs2524106-A	NR	1E-8		0.0194959	[0.013-0.026] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_dbb_hap3	2528445	2528446	rs2524106	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-C	rs2524106-A	NR	4E-8		0.0188058	[0.012-0.026] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_dbb_hap3	2528531	2528532	rs2524105	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	86,890 East Asian ancestry individuals	NA	6p21.33	NR	rs2524105-G	0.317247	4E-41		0.06908	[0.059-0.079] SD units increase	Affymetrix, Illumina [16279099] (imputed)	N
604	chr6_dbb_hap3	2530101	2530102	rs9264533	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	6p21.33	HLA-C	rs9264533-C	0.8091	4E-33		0.05433897	[0.045-0.063] unit increase	Affymetrix [~ 2500000] (imputed)	N
604	chr6_dbb_hap3	2530248	2530249	rs185207145	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin	108,054 Japanese ancestry individuals	NA	6p21.33	HCG27, HLA-C	rs185207145-?	NR	1E-8		0.05419	[0.036-0.073] unit increase novel	Illumina [6108953] (imputed)	N
604	chr6_dbb_hap3	2530798	2530799	rs113509869	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	6p21.33	HLA-C	rs113509869-A	0.123764	9E-21		0.036061548	[0.029-0.044] unit decrease	Affymetrix [93095623] (imputed)	N
604	chr6_dbb_hap3	2530869	2530870	rs2395470	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs2395470-A	NR	5E-15		0.0233443	[0.017-0.029] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_dbb_hap3	2530869	2530870	rs2395470	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-C	rs2395470-A	NR	5E-14		0.0224589	[0.017-0.028] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_dbb_hap3	2530963	2530963	rs139175860	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	6p21.33		rs139175860-TC	0.201723	2E-12		0.0316515	[0.023-0.04] unit increase	Illumina [13476299] (imputed)	N
604	chr6_dbb_hap3	2531112	2531113	rs2853953	25802187	Jiang DK	2015-04-28	Hepatology	Genetic variants in five novel loci including CFB and CD40 predispose to chronic hepatitis B.	Chronic hepatitis B infection	2,514 Chinese ancestry cases, 1,130 Chinese ancestry controls	6,600 Chinese ancestry cases, 8,127 Chinese ancestry controls	6p21.33	HLA-C	rs2853953-A	0.9	5E-20		1.47	[1.35-1.59]	Illumina [3680900] (imputed)	N
604	chr6_dbb_hap3	2531353	2531354	rs9264579	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	6p21.33		rs9264579-A	0.344224	5E-18		0.0325012	[0.025-0.04] unit increase	Illumina [13476266] (imputed)	N
604	chr6_dbb_hap3	2531722	2531723	rs2853951	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-C	rs2853951-C	NR	3E-19		0.0279053	[0.022-0.034] unit increase	Affymetrix [323123] (imputed)	N
604	chr6_dbb_hap3	2531782	2531783	rs2853950	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs2853950-T	NR	1E-10		0.0182212	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_dbb_hap3	2531782	2531783	rs2853950	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-C	rs2853950-T	NR	4E-10		0.0177105	[0.012-0.023] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_dbb_hap3	2531782	2531783	rs2853950	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HLA-C	rs2853950-T	NR	2E-9		0.0171726	[0.012-0.023] unit increase	Affymetrix [321169] (imputed)	N
604	chr6_dbb_hap3	2532017	2532018	rs34131062	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	6p21.33	MICB	rs34131062-?	NR	3E-10	(S_VLDL_TG)	0.07202289	NR unit increase	Illumina [609262]	N
604	chr6_dbb_hap3	2532017	2532018	rs34131062	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	6p21.33	MICB	rs34131062-?	NR	1E-9	(VLDL_TG)	0.071520545	NR unit increase	Illumina [609262]	N
604	chr6_dbb_hap3	2532017	2532018	rs34131062	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	6p21.33	MICB	rs34131062-?	NR	8E-9	(S_VLDL_TG)	0.07218766	NR unit increase	Illumina [609262]	N
604	chr6_dbb_hap3	2532017	2532018	rs34131062	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	6p21.33	MICB	rs34131062-?	NR	1E-8	(VLDL_TG)	0.0707539	NR unit increase	Illumina [609262]	N
604	chr6_dbb_hap3	2532074	2532075	rs2524096	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TXNDC15	5,352 Icelandic ancestry individuals	NA	6p21.33		rs2524096-T	0.3782	1E-49		0.267181	[0.23-0.3] unit decrease	Illumina [7506463] (imputed)	N
604	chr6_dbb_hap3	2532174	2532175	rs1049281	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI in non-smokers	75,379 European ancestry women, 45,811 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	6p21.33	HLA-C	rs1049281-C	0.653	2E-8		0.027	[0.017-0.037] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
604	chr6_dbb_hap3	2532174	2532175	rs1049281	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (joint analysis main effects and smoking interaction)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	6p21.33	HLA-C	rs1049281-C	0.652	2E-10				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
604	chr6_dbb_hap3	2532174	2532175	rs1049281	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	6p21.33	HLA-C	rs1049281-C	0.652	1E-18		0.026	[0.02-0.032] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
604	chr6_dbb_hap3	2532291	2532292	rs3207561	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.33		rs3207561-A	0.623	4E-27				Affymetrix [10369434] (imputed)	N
604	chr6_dbb_hap3	2532293	2532294	rs3207555	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	6p21.33	HLA-C	rs3207555-A	0.34675	4E-12		0.017413307	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
604	chr6_dbb_hap3	2532666	2532667	rs2894204	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	6p21.33	NA	rs2894204-T	0.6383	8E-25		0.0209	[0.017-0.025] unit increase	NR [~ 27400000] (imputed)	N
604	chr6_dbb_hap3	2532666	2532667	rs2894204	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	6p21.33	NR	rs2894204-T	0.6383	8E-25		0.0209	[0.017-0.025] unit increase	NR [~ 27400000] (imputed)	N
604	chr6_dbb_hap3	2533307	2533308	rs17886880	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs17886880-A	NR	1E-10		0.0204376	[0.014-0.027] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_dbb_hap3	2533307	2533308	rs17886880	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-C	rs17886880-A	NR	1E-9		0.0194517	[0.013-0.026] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_dbb_hap3	2533307	2533308	rs17886880	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs17886880-A	NR	2E-11		0.0214244	[0.015-0.028] unit decrease	Affymetrix [321016] (imputed)	N
604	chr6_dbb_hap3	2533380	2533381	rs1050118	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	121,047 East Asian ancestry individuals	NA	6p21.33	NR	rs1050118-C	0.759821	5E-17		0.039726	[0.03-0.049] SD units decrease	Affymetrix, Illumina [16286195] (imputed)	N
604	chr6_dbb_hap3	2533462	2533463	rs34794906	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-C	rs34794906-C	NR	7E-15		0.027207	[0.02-0.034] unit decrease	Affymetrix [323123] (imputed)	N
604	chr6_dbb_hap3	2533462	2533463	rs34794906	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	6p21.33	HLA-C	rs34794906-C	0.2643	2E-23		0.04089973	[0.033-0.049] unit increase	Affymetrix [~ 2500000] (imputed)	N
604	chr6_dbb_hap3	2533919	2533920	rs9264638	23417110	Tin A	2013-02-16	Hum Genet	Genome-wide association study identified the human leukocyte antigen region as a novel locus for plasma beta-2 microglobulin.	Beta-2 microglubulin plasma levels	6,728 European ancestry individuals		6p21.33	HLA-C	rs9264638-A	0.58	2E-23		0.04	[0.032-0.048] unit decrease	Affymetrix [2500000] (imputed)	N
604	chr6_dbb_hap3	2533923	2533924	rs9264639	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	6p21.33	HLA-C	rs9264639-C	0.8898	2E-8		5.601	NR z score decrease	Illumina [26237160] (imputed)	N
604	chr6_dbb_hap3	2534091	2534092	rs9264642	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-C	rs9264642-T	NR	7E-14		0.0238148	[0.018-0.03] unit decrease	Affymetrix [323858] (imputed)	N
604	chr6_dbb_hap3	2534091	2534092	rs9264642	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HLA-C	rs9264642-T	NR	4E-12		0.0220978	[0.016-0.028] unit decrease	Affymetrix [127266] (imputed)	N
604	chr6_dbb_hap3	2534650	2534651	rs1065406	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	6p21.33	HLA-C	rs1065406-T	0.026891	1E-10		0.048755113	[0.034-0.064] unit increase	Affymetrix [93095623] (imputed)	N
604	chr6_dbb_hap3	2534658	2534659	rs2308575	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	6p21.33		rs2308575-T	NR	1E-224		0.0839	[0.079-0.089] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
604	chr6_dbb_hap3	2534658	2534659	rs2308575	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	White blood cell count	8,825 African American individuals, 18,251 Hispanic/Latino individuals, 543 Asian ancestry individuals, 606 Native American ancestry individuals, 383 individuals	NA	6p21.33	NR	rs2308575-?	NR	9E-7		0.01349677	[0.0081-0.0189] unit increase	Illumina [30613845] (imputed)	N
604	chr6_dbb_hap3	2534829	2534830	rs9264664	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Adrenomedullin levels	21,758 European ancestry individuals	9,173 individuals	6p21.33		rs9264664-T	0.67	2E-12		0.0668	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
604	chr6_dbb_hap3	2534893	2534894	rs9264666	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs9264666-G	NR	6E-11		0.0183937	[0.013-0.024] unit increase	Affymetrix [321016] (imputed)	N
604	chr6_dbb_hap3	2534902	2534903	rs17879195	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-C	rs17879195-T	NR	3E-10		0.0253256	[0.017-0.033] unit decrease	Affymetrix [323123] (imputed)	N
604	chr6_dbb_hap3	2535027	2535028	rs41543814	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-C	rs41543814-T	NR	7E-11		0.0205232	[0.014-0.027] unit increase	Affymetrix [323858] (imputed)	N
604	chr6_dbb_hap3	2535027	2535028	rs41543814	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HLA-C	rs41543814-T	NR	7E-10		0.0194382	[0.013-0.026] unit increase	Affymetrix [127266] (imputed)	N
604	chr6_dbb_hap3	2536023	2536024	rs2074488	23144326	Kim DK	2012-11-09	Am J Respir Crit Care Med	Genome-wide association analysis of blood biomarkers in chronic obstructive pulmonary disease.	Chronic obstructive pulmonary disease-related biomarkers	Up to 1,951 European ancestry smokers	NA	6p21.33	HLA-C	rs2074488-T	0.13	2E-10	(SP-D)			Illumina [588352]	N
604	chr6_dbb_hap3	2536071	2536072	rs9357121	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.33		rs9357121-T	0.966	9E-15				Affymetrix [10369434] (imputed)	N
604	chr6_dbb_hap3	2536071	2536072	rs9357121	26582766	Lu X	2015-11-18	Circ Cardiovasc Genet	Genetic Susceptibility to Lipid Levels and Lipid Change Over Time and Risk of Incident Hyperlipidemia in Chinese Populations.	LDL cholesterol	8,344 Han Chinese ancestry individuals	14,739 Han Chinese ancestry individuals	6p21.33	HLA-C	rs9357121-T	0.85	3E-10		1.842	[1.25-2.43] unit increase	Affymetrix, Illumina [2573667] (imputed)	N
604	chr6_dbb_hap3	2536071	2536072	rs9357121	26582766	Lu X	2015-11-18	Circ Cardiovasc Genet	Genetic Susceptibility to Lipid Levels and Lipid Change Over Time and Risk of Incident Hyperlipidemia in Chinese Populations.	Cholesterol, total	8,344 Han Chinese ancestry individuals	14,739 Han Chinese ancestry individuals	6p21.33	HLA-C	rs9357121-T	0.85	2E-10		2.062	[1.42-2.71] unit increase	Affymetrix, Illumina [2573667] (imputed)	N
604	chr6_dbb_hap3	2536227	2536228	rs4361609	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	6p21.33	HLA-C, USP8P1	rs4361609-C	0.120687	1E-47		0.05005804	[0.043-0.057] unit decrease	Affymetrix [93095623] (imputed)	N
604	chr6_dbb_hap3	2536304	2536305	rs2249741	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs2249741-A	NR	1E-14		0.0216601	[0.016-0.027] unit decrease	Affymetrix [319769] (imputed)	N
604	chr6_dbb_hap3	2536304	2536305	rs2249741	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-C	rs2249741-A	NR	3E-13		0.0205289	[0.015-0.026] unit decrease	Affymetrix [319769] (imputed)	N
604	chr6_dbb_hap3	2536304	2536305	rs2249741	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs2249741-A	NR	1E-11		0.0190915	[0.014-0.025] unit increase	Affymetrix [321016] (imputed)	N
604	chr6_dbb_hap3	2536304	2536305	rs2249741	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HLA-C	rs2249741-A	NR	4E-13		0.0206435	[0.015-0.026] unit decrease	Affymetrix [321169] (imputed)	N
604	chr6_dbb_hap3	2536313	2536314	rs2249742	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large LDL	115,082 European ancestry individuals	NA	6p21.33		rs2249742-C	0.555622	3E-9		0.0244495	[0.016-0.033] unit decrease	NR [11722792] (imputed)	N
604	chr6_dbb_hap3	2536313	2536314	rs2249742	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in LDL	115,082 European ancestry individuals	NA	6p21.33		rs2249742-C	0.555622	2E-9		0.0247133	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
604	chr6_dbb_hap3	2536313	2536314	rs2249742	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large LDL	115,082 European ancestry individuals	NA	6p21.33		rs2249742-C	0.555622	2E-8		0.0230779	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
604	chr6_dbb_hap3	2536313	2536314	rs2249742	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in LDL	115,082 European ancestry individuals	NA	6p21.33		rs2249742-C	0.555622	2E-8		0.0234686	[0.015-0.032] unit decrease	NR [11722792] (imputed)	N
604	chr6_dbb_hap3	2536313	2536314	rs2249742	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	LDL cholesterol levels	115,082 European ancestry individuals	NA	6p21.33		rs2249742-C	0.555622	3E-9		0.0245814	[0.016-0.033] unit decrease	NR [11722792] (imputed)	N
604	chr6_dbb_hap3	2536313	2536314	rs2249742	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large LDL	115,082 European ancestry individuals	NA	6p21.33		rs2249742-C	0.555622	8E-10		0.025273	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
604	chr6_dbb_hap3	2536313	2536314	rs2249742	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large LDL	115,082 European ancestry individuals	NA	6p21.33		rs2249742-C	0.555622	4E-9		0.0242248	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
604	chr6_dbb_hap3	2536313	2536314	rs2249742	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs2249742-C	0.559	5E-180				Affymetrix [10369434] (imputed)	N
604	chr6_dbb_hap3	2536313	2536314	rs2249742	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p21.33	HLA-C, USP8P1	rs2249742-T	0.441322	3E-27		0.03629834	[0.03-0.043] unit increase	Affymetrix [93095623] (imputed)	N
604	chr6_dbb_hap3	2536313	2536314	rs2249742	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	6p21.33	HLA-C, USP8P1	rs2249742-T	0.441347	6E-25		0.026632145	[0.022-0.032] unit increase	Affymetrix [93095623] (imputed)	N
604	chr6_dbb_hap3	2536313	2536314	rs2249742	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.33	HLA-C, USP8P1	rs2249742-T	0.441398	2E-70		0.049990416	[0.044-0.056] unit increase	Affymetrix [93095623] (imputed)	N
604	chr6_dbb_hap3	2536313	2536314	rs2249742	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	6p21.33	NR	rs2249742-T	0.448909	4E-405		0.079592	[0.076-0.083] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
604	chr6_dbb_hap3	2536313	2536314	rs2249742	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p21.33	NR	rs2249742-T	0.465758	6E-421				Affymetrix, Illumina [23472807] (imputed)	N
604	chr6_dbb_hap3	2536313	2536314	rs2249742	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	White blood cell count	8,825 African American individuals, 18,251 Hispanic/Latino individuals, 543 Asian ancestry individuals, 606 Native American ancestry individuals, 383 individuals	NA	6p21.33	NR	rs2249742-?	NR	2E-7		0.01238585	[0.0077-0.0171] unit increase	Illumina [30613845] (imputed)	N
604	chr6_dbb_hap3	2536313	2536314	rs2249742	28158719	Jain D	2017-02-01	Hum Mol Genet	Genome-wide association of white blood cell counts in Hispanic/Latino Americans: the Hispanic Community Health Study/Study of Latinos.	White blood cell count (lymphocyte)	up to 11,809 Hispanic/Latino American individuals	up to 7,200 Hispanic/Latino American individuals	6p21.33	HLA-C	rs2249742-C	0.486	4E-8		0.0219	[0.014-0.03] unit decrease	Illumina [27887661] (imputed)	N
604	chr6_dbb_hap3	2536313	2536314	rs2249742	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	6p21.33	HLA-C, USP8P1	rs2249742-T	0.4405	5E-71		0.06448932	[0.057-0.072] unit increase	Affymetrix [~ 2500000] (imputed)	N
604	chr6_dbb_hap3	2536463	2536464	rs9264681	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs9264681-C	NR	1E-13		0.0225581	[0.017-0.029] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_dbb_hap3	2536463	2536464	rs9264681	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-C	rs9264681-C	NR	3E-13		0.0223033	[0.016-0.028] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_dbb_hap3	2536463	2536464	rs9264681	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-C	rs9264681-C	NR	2E-11		0.0221737	[0.016-0.029] unit decrease	Affymetrix [323123] (imputed)	N
604	chr6_dbb_hap3	2536463	2536464	rs9264681	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HLA-C	rs9264681-C	NR	4E-10		0.0192801	[0.013-0.025] unit increase	Affymetrix [321169] (imputed)	N
604	chr6_dbb_hap3	2536623	2536624	rs5010528	28062682	Carr DF	2017-01-05	J Antimicrob Chemother	Genome-wide association study of nevirapine hypersensitivity in a sub-Saharan African HIV-infected population.	Nevirapine-induced hypersensitivity in HIV (Stevens-Johnson syndrome or toxic epidermal necrosis)	51 Sub-saharan African ancestry cases, 182 Sub-saharan African ancestry controls	11 Sub-Saharan African ancestry cases, 27 African ancestry cases, 60 Sub-Saharan African ancestry controls, 8 African ancestry controls	6p21.33	HLA-C	rs5010528-G	0.14	8E-8		4.84	[2.71-8.61]	Illumina [14218511] (imputed)	N
604	chr6_dbb_hap3	2536683	2536684	rs2523599	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs2523599-C	NR	1E-21		0.0275701	[0.022-0.033] unit decrease	Affymetrix [319769] (imputed)	N
604	chr6_dbb_hap3	2536683	2536684	rs2523599	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-C	rs2523599-C	NR	7E-20		0.0263436	[0.021-0.032] unit decrease	Affymetrix [319769] (imputed)	N
604	chr6_dbb_hap3	2536683	2536684	rs2523599	33608531	Wu Y	2021-02-19	Nat Commun	GWAS of peptic ulcer disease implicates Helicobacter pylori infection, other gastrointestinal disorders and depression.	Irritable bowel syndrome	28,518 European ancestry cases, 426,803 European ancestry controls	NA	6p21.33	HLA-C	rs2523599-C	0.39	4E-8		0.95		NR [8546065] (imputed)	N
604	chr6_dbb_hap3	2536773	2536774	rs6900444	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs6900444-T	NR	4E-11		0.0186301	[0.013-0.024] unit decrease	Affymetrix [321016] (imputed)	N
604	chr6_dbb_hap3	2536773	2536774	rs6900444	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-C	rs6900444-T	NR	2E-15		0.0243915	[0.018-0.03] unit decrease	Affymetrix [323123] (imputed)	N
604	chr6_dbb_hap3	2536773	2536774	rs6900444	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	6p21.33	RNU6-283P	rs6900444-?	NR	1E-38		0.0342	[0.029-0.039] unit increase	Affymetrix [5701386] (imputed)	N
604	chr6_dbb_hap3	2536861	2536862	rs6900323	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs6900323-G	NR	3E-10		0.022084	[0.015-0.029] unit decrease	Affymetrix [319769] (imputed)	N
604	chr6_dbb_hap3	2536861	2536862	rs6900323	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-C	rs6900323-G	NR	2E-9		0.0211782	[0.014-0.028] unit decrease	Affymetrix [319769] (imputed)	N
604	chr6_dbb_hap3	2536861	2536862	rs6900323	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-C	rs6900323-G	NR	2E-8		0.0215495	[0.014-0.029] unit increase	Affymetrix [323123] (imputed)	N
604	chr6_dbb_hap3	2537649	2537650	rs7764413	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	USP8P1	rs7764413-C	NR	8E-11		0.0182807	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_dbb_hap3	2537649	2537650	rs7764413	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	USP8P1	rs7764413-C	NR	1E-9		0.0172073	[0.012-0.023] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_dbb_hap3	2537649	2537650	rs7764413	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p21.33	NR	rs7764413-C	0.463	2E-6	(IFNalpha_STAT1_of_CD8p_T)			Illumina [5084123] (imputed)	N
604	chr6_dbb_hap3	2537650	2537651	rs2524081	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p21.33	HLA-C	rs2524081-C		2E-19		0.03	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
604	chr6_dbb_hap3	2537650	2537651	rs2524081	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	6p21.33	HLA-C, USP8P1	rs2524081-C	0.1374	5E-11		0.03378154	[0.024-0.044] unit decrease	Affymetrix [~ 2500000] (imputed)	N
604	chr6_dbb_hap3	2537715	2537716	rs2844620	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	USP8P1	rs2844620-C	NR	4E-19		0.0254568	[0.02-0.031] unit decrease	Affymetrix [319769] (imputed)	N
604	chr6_dbb_hap3	2537715	2537716	rs2844620	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	USP8P1	rs2844620-C	NR	4E-11		0.0208679	[0.015-0.027] unit decrease	Affymetrix [323858] (imputed)	N
604	chr6_dbb_hap3	2537715	2537716	rs2844620	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	USP8P1	rs2844620-C	NR	3E-18		0.0247749	[0.019-0.03] unit decrease	Affymetrix [319769] (imputed)	N
604	chr6_dbb_hap3	2537715	2537716	rs2844620	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	USP8P1	rs2844620-C	NR	5E-10		0.0196514	[0.013-0.026] unit decrease	Affymetrix [127266] (imputed)	N
604	chr6_dbb_hap3	2537715	2537716	rs2844620	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	USP8P1	rs2844620-C	NR	9E-17		0.0239546	[0.018-0.03] unit decrease	Affymetrix [321169] (imputed)	N
604	chr6_dbb_hap3	2537738	2537739	rs2524079	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	6p21.33		rs2524079-A	NR	9E-270		0.0717	[0.068-0.076] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
604	chr6_dbb_hap3	2537738	2537739	rs2524079	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	82,810 East Asian ancestry individuals	NA	6p21.33		rs2524079-A	0.271529	6E-32		0.0612891	[0.051-0.072] unit increase	Illumina [13467171] (imputed)	N
604	chr6_dbb_hap3	2537738	2537739	rs2524079	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	6p21.33		rs2524079-A	NR	3E-162		0.0594	[0.055-0.064] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
604	chr6_dbb_hap3	2537738	2537739	rs2524079	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.33		rs2524079-G	0.583	4E-109				Affymetrix [10369434] (imputed)	N
604	chr6_dbb_hap3	2537738	2537739	rs2524079	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p21.33		rs2524079-G	0.583	2E-76				Affymetrix [10369434] (imputed)	N
604	chr6_dbb_hap3	2537738	2537739	rs2524079	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (lymphocyte)	21,347 Hispanic or Latin American individuals	NA	6p21.33		rs2524079-A	0.5566	1E-8		0.0648	[0.042-0.087] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
604	chr6_dbb_hap3	2537738	2537739	rs2524079	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	21,347 Hispanic or Latin American individuals	NA	6p21.33		rs2524079-A	0.5537	3E-10		0.0627	[0.043-0.082] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
604	chr6_dbb_hap3	2537738	2537739	rs2524079	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	USP8P1	rs2524079-A	NR	6E-11		0.0186395	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_dbb_hap3	2537738	2537739	rs2524079	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	USP8P1	rs2524079-A	NR	4E-10		0.0178594	[0.012-0.023] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_dbb_hap3	2537738	2537739	rs2524079	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	USP8P1	rs2524079-A	NR	7E-9		0.0164819	[0.011-0.022] unit decrease	Affymetrix [321016] (imputed)	N
604	chr6_dbb_hap3	2537738	2537739	rs2524079	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	USP8P1	rs2524079-A	NR	1E-9		0.0175752	[0.012-0.023] unit increase	Affymetrix [321169] (imputed)	N
604	chr6_dbb_hap3	2537738	2537739	rs2524079	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	6p21.33	HLA-C, USP8P1	rs2524079-A	0.417269	1E-31		0.027049404	[0.023-0.032] unit increase	Affymetrix [93095623] (imputed)	N
604	chr6_dbb_hap3	2537738	2537739	rs2524079	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p21.33	NR	rs2524079-A	0.398304	1E-51				Affymetrix, Illumina [19905671] (imputed)	N
604	chr6_dbb_hap3	2537738	2537739	rs2524079	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	6p21.33	NR	rs2524079-A	0.419059	5E-51		0.031209	[0.027-0.035] SD unit increase	Affymetrix, Illumina [50036608] (imputed)	N
604	chr6_dbb_hap3	2537738	2537739	rs2524079	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	White blood cell count	8,825 African American individuals, 18,251 Hispanic/Latino individuals, 543 Asian ancestry individuals, 606 Native American ancestry individuals, 383 individuals	NA	6p21.33	NR	rs2524079-?	NR	1E-9		0.01475699	[0.01-0.019] unit increase	Illumina [30613845] (imputed)	N
604	chr6_dbb_hap3	2537738	2537739	rs2524079	28158719	Jain D	2017-02-01	Hum Mol Genet	Genome-wide association of white blood cell counts in Hispanic/Latino Americans: the Hispanic Community Health Study/Study of Latinos.	White blood cell count (lymphocyte)	up to 11,809 Hispanic/Latino American individuals	up to 7,200 Hispanic/Latino American individuals	6p21.33	NR	rs2524079-A	0.56	2E-8		0.016	[0.01-0.022] unit increase	Illumina [27887661] (imputed)	N
604	chr6_dbb_hap3	2537738	2537739	rs2524079	28158719	Jain D	2017-02-01	Hum Mol Genet	Genome-wide association of white blood cell counts in Hispanic/Latino Americans: the Hispanic Community Health Study/Study of Latinos.	White blood cell count	up to 11,809 Hispanic/Latino American individuals	up to 7,200 Hispanic/Latino American individuals	6p21.33	HLA-C	rs2524079-G	0.556	2E-8		0.213	[0.21-0.22] unit decrease	Illumina [27887661] (imputed)	N
604	chr6_dbb_hap3	2537738	2537739	rs2524079	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	6p21.33	HLA-C, USP8P1	rs2524079-A	0.4171	2E-126		0.08687249	[0.08-0.094] unit increase	Affymetrix [~ 2500000] (imputed)	N
604	chr6_dbb_hap3	2537738	2537739	rs2524079	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	6p21.33	HLA-C, USP8P1	rs2524079-A	0.4168	6E-68		0.06325533	[0.056-0.07] unit increase	Affymetrix [~ 2500000] (imputed)	N
604	chr6_dbb_hap3	2537738	2537739	rs2524079	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	6p21.33	HLA-C, USP8P1	rs2524079-A	0.4168	2E-68		0.06352314	[0.056-0.071] unit increase	Affymetrix [~ 2500000] (imputed)	N
604	chr6_dbb_hap3	2537738	2537739	rs2524079	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	6p21.33	HLA-C, USP8P1	rs2524079-A	0.4168	1E-67		0.0630379	[0.056-0.07] unit increase	Affymetrix [~ 2500000] (imputed)	N
604	chr6_dbb_hap3	2537738	2537739	rs2524079	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	6p21.33	HLA-C, USP8P1	rs2524079-A	0.4168	9E-69		0.06375719	[0.057-0.071] unit increase	Affymetrix [~ 2500000] (imputed)	N
604	chr6_dbb_hap3	2537738	2537739	rs2524079	21738480	Nalls MA	2011-07-01	PLoS Genet	Multiple loci are associated with white blood cell phenotypes.	White blood cell count	19,509 European ancestry individuals	11,823 European ancestry individuals	6p21.33	PSORS1C3, HCG27, HLA-C, HLA-B	rs2524079-A		1E-11	(Lymphocytes)	0.0148	[0.010-0.019] unit increase	Affymetrix, Illumina [> 2400000] (imputed)	N
604	chr6_dbb_hap3	2537755	2537756	rs12111032	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p21.33	HLA-C, HLA-B	rs12111032-G	0.24	1E-9	(EA)	2.32	[1.76-3.06]	Illumina [up to 547389]	N
604	chr6_dbb_hap3	2537787	2537788	rs2844619	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	USP8P1	rs2844619-C	NR	4E-24		0.0293712	[0.024-0.035] unit decrease	Affymetrix [319769] (imputed)	N
604	chr6_dbb_hap3	2537787	2537788	rs2844619	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	USP8P1	rs2844619-C	NR	8E-22		0.0278547	[0.022-0.034] unit decrease	Affymetrix [319769] (imputed)	N
604	chr6_dbb_hap3	2537787	2537788	rs2844619	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	USP8P1	rs2844619-C	NR	7E-20		0.0267656	[0.021-0.033] unit decrease	Affymetrix [321169] (imputed)	N
604	chr6_dbb_hap3	2538203	2538204	rs2844616	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	USP8P1	rs2844616-C	NR	5E-17		0.0240156	[0.018-0.03] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_dbb_hap3	2538203	2538204	rs2844616	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	USP8P1	rs2844616-C	NR	3E-16		0.0233918	[0.018-0.029] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_dbb_hap3	2538203	2538204	rs2844616	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	6p21.33	USP8P1	rs2844616-C	NR	2E-9		0.0194652	[0.013-0.026] unit decrease	Affymetrix [323858] (imputed)	N
604	chr6_dbb_hap3	2538203	2538204	rs2844616	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	USP8P1	rs2844616-C	NR	7E-18		0.0267883	[0.021-0.033] unit decrease	Affymetrix [323123] (imputed)	N
604	chr6_dbb_hap3	2538295	2538296	rs12199223	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CD8A	5,365 Icelandic ancestry individuals	NA	6p21.33		rs12199223-A	0.08655	2E-61		0.542037	[0.48-0.61] unit increase	Illumina [7506463] (imputed)	N
604	chr6_dbb_hap3	2538295	2538296	rs12199223	30921485	Bejaoui Y	2019-03-28	Exp Dermatol	Genome-wide association study of psoriasis in an Egyptian population.	Psoriasis	215 Egyptian ancestry cases, 416 Egyptian ancestry controls	321 Egyptian ancestry cases, 253 Egyptian ancestry controls	6p21.33	HLA-C	rs12199223-?	NR	7E-18		2.49	[2.01-3.1]	Illumina [312245]	N
604	chr6_dbb_hap3	2538326	2538327	rs3134745	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	6p21.33	HLA-C, USP8P1	rs3134745-T	0.325625	5E-10		0.01714023	[0.012-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
604	chr6_dbb_hap3	2538911	2538912	rs9461680	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6p21.33		rs9461680-C	0.825202	3E-9		0.0310951	[0.021-0.041] unit increase	NR [11722792] (imputed)	N
604	chr6_dbb_hap3	2538911	2538912	rs9461680	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	6p21.33		rs9461680-C	0.825202	9E-11		0.032856	[0.023-0.043] unit increase	NR [11722792] (imputed)	N
604	chr6_dbb_hap3	2538923	2538924	rs9468911	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6p21.33		rs9468911-G	0.825215	1E-11		0.0349605	[0.025-0.045] unit decrease	NR [11722792] (imputed)	N
604	chr6_dbb_hap3	2538923	2538924	rs9468911	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6p21.33		rs9468911-G	0.825215	8E-12		0.0354702	[0.025-0.046] unit increase	NR [11722792] (imputed)	N
604	chr6_dbb_hap3	2539142	2539143	rs73390981	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	6p21.33		rs73390981-G	0.922	1E-33				Affymetrix [10369434] (imputed)	N
604	chr6_dbb_hap3	2539142	2539143	rs73390981	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	6p21.33	USP8P1	rs73390981-A	0.078064	3E-29		0.049712982	[0.041-0.058] unit increase	Affymetrix [93095623] (imputed)	N
604	chr6_dbb_hap3	2539179	2539180	rs13200569	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	6p21.33	USP8P1	rs13200569-A	0.285539	7E-13		0.01938597	[0.014-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
604	chr6_dbb_hap3	2539392	2539393	rs4141168	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	6p21.33		rs4141168-A	0.786459	2E-8		0.0267074	[0.017-0.036] unit increase	NR [11722792] (imputed)	N
604	chr6_dbb_hap3	2539394	2539395	rs2524076	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	USP8P1	rs2524076-G	NR	2E-14		0.0235806	[0.018-0.03] unit increase	Affymetrix [323123] (imputed)	N
604	chr6_dbb_hap3	2539394	2539395	rs2524076	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	USP8P1	rs2524076-G	NR	4E-15		0.0225429	[0.017-0.028] unit decrease	Affymetrix [321169] (imputed)	N
604	chr6_dbb_hap3	2539448	2539449	rs3130696	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	6p21.33	MICB	rs3130696-?	NR	5E-10	(XS_VLDL_TG)	0.06374044	NR unit decrease	Illumina [609262]	N
604	chr6_dbb_hap3	2539448	2539449	rs3130696	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	6p21.33	MICB	rs3130696-?	NR	3E-6	(XS_VLDL_TG)	0.059096735	NR unit decrease	Illumina [609262]	N
604	chr6_dbb_hap3	2539459	2539460	rs3094680	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	6p21.33	HLA	rs3094680-T	0.601913	1E-8		1.05	[1.03-1.06]	NR [8126035] (imputed)	N
604	chr6_dbb_hap3	2540354	2540355	rs2524069	27327535	Laville V	2016-06-21	Pigment Cell Melanoma Res	A genome-wide association study in Caucasian women suggests the involvement of HLA genes in the severity of facial solar lentigines.	Severity of facial solar lentigines	502 French ancestry individuals		6p21.33	USP8P1, HLA-C	rs2524069-T	0.13	3E-7				Illumina [795063]	N
604	chr6_dbb_hap3	2540525	2540526	rs6919908	26007630	Swaminathan B	2015-05-26	Nat Commun	Variants in ELL2 influencing immunoglobulin levels associate with multiple myeloma.	Multiple myeloma and monoclonal gammopathy	2,194 European ancestry multiple myeloma cases, 251 European ancestry monoclonal gammopathy cases, 294,390 European ancestry controls	586 European ancestry multiple myeloma cases, 2,111 European ancestry controls	6p21.33	PSORS1C2, HLA	rs6919908-T	0.23	6E-10		0.23	[NR] unit increase	Illumina [12100000] (imputed)	N
604	chr6_dbb_hap3	2540525	2540526	rs6919908	26007630	Swaminathan B	2015-05-26	Nat Commun	Variants in ELL2 influencing immunoglobulin levels associate with multiple myeloma.	Multiple myeloma	2,194 European ancestry cases, 222,555 European ancestry controls	586 European ancestry cases, 2,111 European ancestry controls	6p21.33	PSORS1C2, HLA	rs6919908-T	0.23	4E-10		0.25	[NR] unit increase	Illumina [12100000] (imputed)	N
604	chr6_dbb_hap3	2541375	2541376	rs2524067	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p21.33	HLA-C, HLA-B	rs2524067-G	0.353	1E-25				Illumina [118177]	N
604	chr6_dbb_hap3	2542377	2542378	rs7383388	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6p21.33	RPL3P2	rs7383388-T	0.404081	1E-10		0.01745803	[0.012-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
604	chr6_dbb_hap3	2542750	2542751	rs2853946	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	USP8P1	rs2853946-T	NR	2E-9		0.0200045	[0.014-0.026] unit decrease	Affymetrix [323123] (imputed)	N
604	chr6_dbb_hap3	2542750	2542751	rs2853946	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	USP8P1	rs2853946-T	NR	5E-11		0.0201772	[0.014-0.026] unit increase	Affymetrix [321169] (imputed)	N
604	chr6_dbb_hap3	2542750	2542751	rs2853946	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	119,629 East Asian ancestry individuals	NA	6p21.33	NR	rs2853946-A	0.728288	8E-12		0.03126	[0.022-0.04] SD units decrease	Affymetrix, Illumina [16286228] (imputed)	N
604	chr6_dbb_hap3	2542750	2542751	rs2853946	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	White blood cell count	8,825 African American individuals, 18,251 Hispanic/Latino individuals, 543 Asian ancestry individuals, 606 Native American ancestry individuals, 383 individuals	NA	6p21.33	NR	rs2853946-?	NR	8E-7		0.0119414	[0.0072-0.0167] unit increase	Illumina [30613845] (imputed)	N
604	chr6_dbb_hap3	2542750	2542751	rs2853946	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.33	USP8P1	rs2853946-A	0.6837	8E-12		0.0519	[0.037-0.067] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
604	chr6_dbb_hap3	2542750	2542751	rs2853946	25096241	Keller MF	2014-08-05	Hum Mol Genet	Trans-ethnic meta-analysis of white blood cell phenotypes.	White blood cell count	16,843 Japanese ancestry individuals, 19,509 European ancestry individuals, 16,388 African American individuals	NA	6p21.33	HLA-B	rs2853946-A	0.717	8E-6	(Japanese)	0.013	[0.0071-0.0189] unit decrease	Illumina [NR] (imputed)	N
604	chr6_dbb_hap3	2542750	2542751	rs2853946	25096241	Keller MF	2014-08-05	Hum Mol Genet	Trans-ethnic meta-analysis of white blood cell phenotypes.	White blood cell count	16,843 Japanese ancestry individuals, 19,509 European ancestry individuals, 16,388 African American individuals	NA	6p21.33	HLA-B	rs2853946-A	0.348	1E-8	(EA)	0.017	[0.011-0.023] unit decrease	Illumina [NR] (imputed)	N
604	chr6_dbb_hap3	2542750	2542751	rs2853946	25096241	Keller MF	2014-08-05	Hum Mol Genet	Trans-ethnic meta-analysis of white blood cell phenotypes.	White blood cell count	16,843 Japanese ancestry individuals, 19,509 European ancestry individuals, 16,388 African American individuals	NA	6p21.33	HLA-B	rs2853946-?	NR	3E-14		0.0139	[0.010-0.017] unit decrease	Illumina [NR] (imputed)	N
604	chr6_dbb_hap3	2542953	2542954	rs112262437	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.33	NR	rs112262437-C	0.994	2E-27	(conditional)	6.006	[5.68-6.33]	Illumina [11270530] (imputed)	N
604	chr6_dbb_hap3	2542961	2542962	rs2844608	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	RPL3P2	rs2844608-T	NR	3E-19		0.0260453	[0.02-0.032] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_dbb_hap3	2542961	2542962	rs2844608	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	RPL3P2	rs2844608-T	NR	2E-18		0.0254038	[0.02-0.031] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_dbb_hap3	2542961	2542962	rs2844608	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4 on CD28+ CD4+ T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs2844608-T	0.45698	9E-10		0.1884	[0.13-0.25] unit increase	Illumina [17954496] (imputed)	N
604	chr6_dbb_hap3	2543418	2543419	rs2853943	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	RPL3P2	rs2853943-C	NR	2E-12		0.0232178	[0.017-0.03] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_dbb_hap3	2543418	2543419	rs2853943	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	RPL3P2	rs2853943-C	NR	3E-12		0.0229712	[0.017-0.029] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_dbb_hap3	2543979	2543980	rs2844606	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	RPL3P2	rs2844606-G	NR	2E-9		0.0190067	[0.013-0.025] unit increase	Affymetrix [323858] (imputed)	N
604	chr6_dbb_hap3	2543979	2543980	rs2844606	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	RPL3P2	rs2844606-G	NR	5E-8		0.017266	[0.011-0.023] unit increase	Affymetrix [127266] (imputed)	N
604	chr6_dbb_hap3	2543979	2543980	rs2844606	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	RPL3P2	rs2844606-G	NR	1E-13		0.021298	[0.016-0.027] unit increase	Affymetrix [321169] (imputed)	N
604	chr6_dbb_hap3	2543979	2543980	rs2844606	33204752	Butler-Laporte G	2020-09-24	Open Forum Infect Dis	Genetic Determinants of Antibody-Mediated Immune Responses to Infectious Diseases Agents: A Genome-Wide and HLA Association Study.	Anti-human herpes virus 6 IE1A IgG seropositivity	8,735 White British ancestry individuals	NA	6p21.33	RPL3P2	rs2844606-A	0.584	1E-8		0.1	unit decrease	NR [25472218] (imputed)	N
604	chr6_dbb_hap3	2543979	2543980	rs2844606	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	6p21.33	RPL3P2	rs2844606-G	0.417187	3E-23		0.025892606	[0.021-0.031] unit increase	Affymetrix [93095623] (imputed)	N
604	chr6_dbb_hap3	2543981	2543982	rs9264758	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p21.33	HLA-C	rs9264758-G	0.866	3E-7		0.082	[0.051-0.113] unit increase	Affymetrix, Illumina [7374092] (imputed)	N
604	chr6_dbb_hap3	2544138	2544139	rs2844605	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	RPL3P2	rs2844605-C	NR	7E-16		0.0250208	[0.019-0.031] unit decrease	Affymetrix [323123] (imputed)	N
604	chr6_dbb_hap3	2544225	2544226	rs9264759	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	93,063 East Asian ancestry individuals	NA	6p21.33		rs9264759-C	0.695944	2E-40		0.0639223	[0.055-0.073] unit decrease	Illumina [13470073] (imputed)	N
604	chr6_dbb_hap3	2544776	2544777	rs2853941	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	RPL3P2	rs2853941-C	NR	1E-9		0.0174735	[0.012-0.023] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_dbb_hap3	2544945	2544946	rs9264764	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	RPL3P2	rs9264764-C	NR	4E-9		0.0168291	[0.011-0.022] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_dbb_hap3	2545140	2545141	rs7766089	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	RPL3P2	rs7766089-G	NR	5E-19		0.0281143	[0.022-0.034] unit increase	Affymetrix [323123] (imputed)	N
604	chr6_dbb_hap3	2545140	2545141	rs7766089	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	RPL3P2	rs7766089-G	NR	2E-20		0.0271218	[0.021-0.033] unit decrease	Affymetrix [321169] (imputed)	N
604	chr6_dbb_hap3	2545279	2545280	rs2853940	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gastric cancer	1,029 European ancestry cases, 475,087 European ancestry controls, 7,921 East Asian ancestry cases, 159,201 East Asian ancestry controls	NA	6p21.33		rs2853940-C	NR	8E-12		0.1087	[0.078-0.14] unit increase	Affymetrix, Illumina [25843697] (imputed)	N
604	chr6_dbb_hap3	2545279	2545280	rs2853940	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	RPL3P2	rs2853940-C	NR	3E-17		0.0246751	[0.019-0.03] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_dbb_hap3	2545279	2545280	rs2853940	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	RPL3P2	rs2853940-C	NR	4E-16		0.0237957	[0.018-0.03] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_dbb_hap3	2546189	2546190	rs2853939	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	RPL3P2	rs2853939-T	NR	2E-28		0.033269	[0.027-0.039] unit increase	Affymetrix [323123] (imputed)	N
604	chr6_dbb_hap3	2547943	2547944	rs2524054	20045101	Ferreira MA	2009-12-31	Am J Hum Genet	Quantitative trait loci for CD4:CD8 lymphocyte ratio are associated with risk of type 1 diabetes and HIV-1 immune control.	CD8-positive T-lymphocyte count	2,538 European ancestry twins from 1,089 families	988 individuals from 550 families	6p21.33	HLA-B	rs2524054-A	0.32	6E-21		0.37	[0.31-0.43] SD increase	Illumina [529721]	N
604	chr6_dbb_hap3	2547943	2547944	rs2524054	20045101	Ferreira MA	2009-12-31	Am J Hum Genet	Quantitative trait loci for CD4:CD8 lymphocyte ratio are associated with risk of type 1 diabetes and HIV-1 immune control.	CD4:CD8 lymphocyte ratio	2,538 European ancestry twins from 1,089 families	988 individuals from 550 families	6p21.33	HLA-B	rs2524054-A	0.32	2E-28		0.37	[0.31-0.43] SD increase	Illumina [529721]	N
604	chr6_dbb_hap3	2548472	2548473	rs12191877	26626624	Stuart PE	2015-11-28	Am J Hum Genet	Genome-wide Association Analysis of Psoriatic Arthritis and Cutaneous Psoriasis Reveals Differences in Their Genetic Architecture.	Psoriatic arthritis	1,946 European ancestry cases, 4,934 European ancestry controls	up to 2,883 European ancestry cases, up to 14,179 European ancestry controls		HLA-C, HLA-B, HLA, MHC	rs12191877-T	NR	2E-99		2.416	NR	Illumina [11532644] (imputed)	N
604	chr6_dbb_hap3	2548472	2548473	rs12191877	20953188	Ellinghaus E	2010-10-17	Nat Genet	Genome-wide association study identifies a psoriasis susceptibility locus at TRAF3IP2.	Psoriasis	472 European ancestry cases, 1,146 European ancestry controls	2,668, European ancestry cases, 762 French Canadian founder population cases, 2,585 cases, 3,485 European ancestry controls, 994 French Canadian founder population controls, 2,412 controls		HLA-C	rs12191877-?	NR	4E-32		2.79	[2.35-3.33]	Illumina [2339118] (imputed)	N
604	chr6_dbb_hap3	2548472	2548473	rs12191877	19169254	Nair RP	2009-01-25	Nat Genet	Genome-wide scan reveals association of psoriasis with IL-23 and NF-kappaB pathways.	Psoriasis	1,359 European ancestry cases, 1,400 European ancestry controls	5,048 European ancestry cases, 5,041 European ancestry controls		HLA-C	rs12191877-T	0.15	1E-100		2.64	[NR]	Perlegen [~ 2500000] (imputed)	N
604	chr6_dbb_hap3	2549635	2549636	rs2853933	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	WASF5P	rs2853933-T	NR	5E-17		0.0264491	[0.02-0.033] unit decrease	Affymetrix [323858] (imputed)	N
604	chr6_dbb_hap3	2549635	2549636	rs2853933	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	WASF5P	rs2853933-T	NR	5E-15		0.0246973	[0.019-0.031] unit decrease	Affymetrix [127266] (imputed)	N
604	chr6_dbb_hap3	2550555	2550556	rs13214872	33385400	Patrick MT	2020-12-29	J Invest Dermatol	Causal relationship and shared genetic loci between psoriasis and type 2 diabetes through trans-disease meta-analysis.	Psoriasis or type 2 diabetes (trans-disease meta-analysis)	11,024 European ancestry psoriasis cases, 74,124 European ancestry diabetes cases, 840,342 European ancestry controls	NA		NR	rs13214872-G	NR	2E-302		1.67	NR	NR [8016731] (imputed)	N
604	chr6_dbb_hap3	2550989	2550990	rs114598080	32421744	Gzara C	2020-05-18	PLoS Pathog	Family-based genome-wide association study of leprosy in Vietnam.	Leprosy	1,749 Vietnamese ancestry cases	1,181 Vietnamese ancestry cases, 688 Vietnamese ancestry controls	6p21.33	HLA-C	rs114598080-A	0.1	9E-13		1.47	[1.46-1.48]	Illumina [5607170] (imputed)	N
604	chr6_dbb_hap3	2553058	2553059	rs2853928	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for VLDL particles	115,082 European ancestry individuals	NA	6p21.33		rs2853928-A	0.298678	8E-11		0.0272348	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
604	chr6_dbb_hap3	2553058	2553059	rs2853928	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	HLA-C, WASF5P, XXbac-BPG248L24.13, HLA-B, XXbac-BPG248L24.12, USP8P1, RPL3P2, XXbac-BPG248L24.10, MIR6891	rs2853928-A	0.2253521	3E-12	(EA, Granzyme A)	0.3627	[0.26-0.46] unit decrease	Affymetrix [509946]	N
604	chr6_dbb_hap3	2553940	2553941	rs2844594	34785669	Grosche S	2021-11-16	Nat Commun	Rare variant analysis in eczema identifies exonic variants in DUSP1, NOTCH4 and SLC9A4.	Eczema	20,016 European ancestry cases, 380,433 European ancestry controls	NA	6p21.33		rs2844594-A	0.1766	3E-14		1.12		Affymetrix, Illumina [9397031] (imputed)	N
604	chr6_dbb_hap3	2553940	2553941	rs2844594	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HVEM on naive CD8+ T cell	1,247 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs2844594-A	0.38517	2E-10		0.276	[0.19-0.36] unit decrease	Illumina [16410374] (imputed)	N
604	chr6_dbb_hap3	2554384	2554385	rs9468925	20526339	Quan C	2010-06-06	Nat Genet	Genome-wide association study for vitiligo identifies susceptibility loci at 6q27 and the MHC.	Vitiligo	1,117 Han Chinese ancestry cases, 1,429 Han Chinese ancestry controls	6,623 East Asian ancestry cases, 10,740 East Asian ancestry controls	6p21.33	HLA	rs9468925-?	0.617	2E-33		1.35	[1.28-1.41]	Illumina [493909]	N
604	chr6_dbb_hap3	2555138	2555139	rs2524163	27286809	Ligthart S	2016-06-10	BMC Genomics	Bivariate genome-wide association study identifies novel pleiotropic loci for lipids and inflammation.	C-reactive protein levels or triglyceride levels (pleiotropy)	65,000 individuals (C-reactive protein), 96,598 individuals (triglycerides)	NA	6p21.33	HLA-C	rs2524163-T	NR	8E-10				NR [25015711] (imputed)	N
604	chr6_dbb_hap3	2555687	2555688	rs115464798	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	6p21.33	WASF5P	rs115464798-A	0.056192	5E-21		0.049840536	[0.039-0.06] unit decrease	Affymetrix [93095623] (imputed)	N
604	chr6_dbb_hap3	2558340	2558341	rs2524147	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs2524147-G	0.814	8E-65				Affymetrix [10369434] (imputed)	N
604	chr6_dbb_hap3	2559069	2559070	rs2524143	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs2524143-C	0.736	2E-52	(Killer cell immunoglobulin-like receptor 2DS2, KIR2DS2.10428.1.3)	0.43	[0.37-0.49] unit decrease	Affymetrix [10572788] (imputed)	N
604	chr6_dbb_hap3	2559081	2559082	rs2524142	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	6p21.33		rs2524142-C	0.299755	1E-8		0.0256476	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
604	chr6_dbb_hap3	2559081	2559082	rs2524142	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	6p21.33		rs2524142-C	0.299755	8E-10		0.02748	[0.019-0.036] unit decrease	NR [11722792] (imputed)	N
604	chr6_dbb_hap3	2559081	2559082	rs2524142	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs2524142-G	0.734	3E-22	(cAMP-specific 3',5'-cyclic phosphodiesterase 4D, PDE4D.5255.22.3)	0.28	[0.22-0.34] unit increase	Affymetrix [10572788] (imputed)	N
604	chr6_dbb_hap3	2559312	2559313	rs2894207	27436580	Cui Q	2016-07-19	Hum Mol Genet	An extended genome-wide association study identifies novel susceptibility loci for nasopharyngeal carcinoma.	Nasopharyngeal carcinoma	1,583 Southern Chinese ancestry cases, 2,979 Southern Chinese ancestry controls	5,463 Southern Chinese ancestry cases, 5,591 Southern Chinese ancestry controls	6p21.33	NR	rs2894207-?	0.84	2E-19		1.96	[1.69-2.27]	Illumina [463250]	N
604	chr6_dbb_hap3	2559312	2559313	rs2894207	20512145	Bei JX	2010-05-30	Nat Genet	A genome-wide association study of nasopharyngeal carcinoma identifies three new susceptibility loci.	Nasopharyngeal carcinoma	1,583 Chinese ancestry cases, 1,894 Chinese ancestry controls	3,507 Chinese ancestry cases, 3,063 Chinese ancestry controls, 284  Chinese ancestry trios	6p21.33	HLA-C, HLA-B	rs2894207-?	0.82	3E-33		1.64	[1.52-1.75]	Illumina [464328]	N
604	chr6_dbb_hap3	2559362	2559363	rs114583506	33483693	Clements CC	2021-01-22	Mol Psychiatry	Genome-wide association study of patients with a severe major depressive episode treated with electroconvulsive therapy.	Major depressive episode treated with electroconvulsive therapy	2,725 European ancestry cases, 3,290 European ancestry controls	NA	6p21.33	HLA-C	rs114583506-?	NR	4E-8		0.5992	[0.42-0.78]	Illumina [NR] (imputed)	N
604	chr6_dbb_hap3	2559362	2559363	rs114583506	33483693	Clements CC	2021-01-22	Mol Psychiatry	Genome-wide association study of patients with a severe major depressive episode treated with electroconvulsive therapy.	Major depressive disorder and major depressive episode treated with electroconvulsive therapy	1,796 European ancestry cases, 3,290 European ancestry controls	NA	6p21.33	HLA-C	rs114583506-?	NR	1E-7		0.5845	[0.39-0.78]	Illumina [NR] (imputed)	N
604	chr6_dbb_hap3	2559699	2559700	rs2524139	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	XXbac-BPG248L24.13	rs2524139-C	0.734	2E-52	(Killer cell immunoglobulin-like receptor 2DS2, KIR2DS2.10428.1.3)	0.43	[0.37-0.49] unit decrease	Affymetrix [10572788] (imputed)	N
604	chr6_dbb_hap3	2559959	2559960	rs9380237	32558222	Okamura K	2020-06-18	Pigment Cell Melanoma Res	Genome-wide association study identifies CDH13 as a susceptibility gene for rhododendrol-induced leukoderma.	Leukoderma in response to rhododendrol	147 Japanese ancestry cases, 112 Japanese ancestry controls	NA	6p21.33	HLA-B, HLA-C	rs9380237-?	NR	8E-6		3.5714285	[1.96-6.25]	Illumina [1057565]	N
604	chr6_dbb_hap3	2560028	2560029	rs3094682	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	6p21.33	NR	rs3094682-C	0.8056	2E-23		0.0598	[0.048-0.072] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
604	chr6_dbb_hap3	2560689	2560690	rs55745121	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	6p21.33	XXbac-BPG248L24.13	rs55745121-C	0.00771999999999995	2E-12		0.103537746	[0.075-0.132] unit increase	Affymetrix [93095623] (imputed)	N
604	chr6_dbb_hap3	2560701	2560702	rs2524129	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2524129-C	0.298408	4E-18		0.0377033	[0.029-0.046] unit decrease	NR [11722792] (imputed)	N
604	chr6_dbb_hap3	2560701	2560702	rs2524129	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small LDL	115,082 European ancestry individuals	NA	6p21.33		rs2524129-C	0.298408	2E-16		0.0359658	[0.027-0.045] unit decrease	NR [11722792] (imputed)	N
604	chr6_dbb_hap3	2560701	2560702	rs2524129	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2524129-C	0.298408	5E-15		0.0341259	[0.026-0.043] unit decrease	NR [11722792] (imputed)	N
604	chr6_dbb_hap3	2560701	2560702	rs2524129	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium LDL	115,082 European ancestry individuals	NA	6p21.33		rs2524129-C	0.298408	5E-17		0.036788	[0.028-0.045] unit decrease	NR [11722792] (imputed)	N
604	chr6_dbb_hap3	2560701	2560702	rs2524129	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2524129-C	0.298408	3E-14		0.0327886	[0.024-0.041] unit decrease	NR [11722792] (imputed)	N
604	chr6_dbb_hap3	2560701	2560702	rs2524129	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total triglycerides levels	115,082 European ancestry individuals	NA	6p21.33		rs2524129-C	0.298408	3E-15		0.0342705	[0.026-0.043] unit decrease	NR [11722792] (imputed)	N
604	chr6_dbb_hap3	2560701	2560702	rs2524129	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2524129-C	0.298408	2E-11		0.0290519	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
604	chr6_dbb_hap3	2560828	2560829	rs2246954	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.13	rs2246954-A	NR	2E-8		0.0159083	[0.01-0.021] unit decrease	Affymetrix [321114] (imputed)	N
604	chr6_dbb_hap3	2560828	2560829	rs2246954	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.13	rs2246954-A	NR	1E-9		0.0195845	[0.013-0.026] unit increase	Affymetrix [323858] (imputed)	N
604	chr6_dbb_hap3	2561039	2561040	rs2247056	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-3 fatty acid levels	115,006 European ancestry individuals	NA	6p21.33		rs2247056-T	0.296693	2E-16		0.0356403	[0.027-0.044] unit decrease	NR [11722792] (imputed)	N
604	chr6_dbb_hap3	2561039	2561040	rs2247056	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2247056-T	0.296684	6E-12		0.0298649	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
604	chr6_dbb_hap3	2561039	2561040	rs2247056	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.33	NR	rs2247056-T	NR	2E-14		0.034	unit decrease	Affymetrix [at least 7091467] (imputed)	N
604	chr6_dbb_hap3	2561039	2561040	rs2247056	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.33	NR	rs2247056-T	0.249	1E-12	(EA)	0.034	unit decrease	Affymetrix [at least 7091467] (imputed)	N
604	chr6_dbb_hap3	2561039	2561040	rs2247056	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.33	NR	rs2247056-T	NR	2E-18		0.043	unit decrease	Affymetrix [at least 7091467] (imputed)	N
604	chr6_dbb_hap3	2561039	2561040	rs2247056	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.33	NR	rs2247056-T	0.249	2E-17	(EA)	0.045	unit decrease	Affymetrix [at least 7091467] (imputed)	N
604	chr6_dbb_hap3	2561039	2561040	rs2247056	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.33	NR	rs2247056-T	NR	2E-8		0.028	unit decrease	Affymetrix [at least 7091467] (imputed)	N
604	chr6_dbb_hap3	2561039	2561040	rs2247056	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.33	NR	rs2247056-T	0.249	6E-8	(EA)	0.029	unit decrease	Affymetrix [at least 7091467] (imputed)	N
604	chr6_dbb_hap3	2561039	2561040	rs2247056	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	6p21.33	HLA-C, HLA-B	rs2247056-T	0.27	4E-12		1.18	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
604	chr6_dbb_hap3	2561039	2561040	rs2247056	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	Triglycerides	96,598 European ancestry individuals	NA	6p21.33	HLA	rs2247056-T	0.25	2E-15		2.99	[2.17-3.81] mg/dL decrease	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
604	chr6_dbb_hap3	2561286	2561287	rs2853923	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.13	rs2853923-G	NR	4E-8		0.0175506	[0.011-0.024] unit decrease	Affymetrix [323858] (imputed)	N
604	chr6_dbb_hap3	2561590	2561591	rs17192526	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.13	rs17192526-C	NR	1E-9		0.0195758	[0.013-0.026] unit increase	Affymetrix [323858] (imputed)	N
604	chr6_dbb_hap3	2561590	2561591	rs17192526	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.13	rs17192526-C	NR	8E-9		0.0185107	[0.012-0.025] unit increase	Affymetrix [127266] (imputed)	N
604	chr6_dbb_hap3	2561590	2561591	rs17192526	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.13	rs17192526-C	NR	2E-18		0.0275913	[0.021-0.034] unit decrease	Affymetrix [323123] (imputed)	N
604	chr6_dbb_hap3	2561639	2561640	rs4406273	26626624	Stuart PE	2015-11-28	Am J Hum Genet	Genome-wide Association Analysis of Psoriatic Arthritis and Cutaneous Psoriasis Reveals Differences in Their Genetic Architecture.	Psoriasis vulgaris	4,007 European ancestry cases, 4,934 European ancestry controls	up to 9,075 European ancestry cases, up to European ancestry 12,726 controls	6p21.33	HLA-B, HLA-C	rs4406273-A	NR	2E-312		3.38	NR	Illumina [up to 11532644] (imputed)	N
604	chr6_dbb_hap3	2561639	2561640	rs4406273	23143594	Tsoi LC	2012-12-01	Nat Genet	Identification of 15 new psoriasis susceptibility loci highlights the role of innate immunity.	Psoriasis	10,588 European ancestry cases, 22,806 European ancestry controls	NA	6p21.33	HLA-B, HLA-C	rs4406273-A	0.092	5E-723		4.32		Illumina [111236] (imputed)	N
604	chr6_dbb_hap3	2561666	2561667	rs2524095	31879980	German CA	2019-12-26	Genet Epidemiol	Ordered multinomial regression for genetic association analysis of ordinal phenotypes at Biobank scale.	Hypertension	30,822 British ancestry normal blood pressure individuals, 25,242 British ancestry elevated blood pressure individuals, 50,461 British ancestry stage 1 hypertension individuals, 75,286 British ancestry stage 2 hypertension individuals, 3,754 British ancestry hypertension crisis individuals	NA	6p21.33	LINC02571	rs2524095-?	NR	1E-9		0.03838402	NR unit increase	Affymetrix [464137]	N
604	chr6_dbb_hap3	2563485	2563486	rs28367631	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	WASF5P, HLA-C, XXbac-BPG248L24.10, USP8P1, RPL3P2, XXbac-BPG248L24.13	rs28367631-T	0.3457286	1E-15	(EA, MHC class I polypeptide-related sequence A)	0.3635	[0.28-0.45] unit decrease	Affymetrix [509946]	N
604	chr6_dbb_hap3	2563663	2563664	rs2524046	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.13	rs2524046-T	NR	1E-10		0.0223645	[0.016-0.029] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_dbb_hap3	2563664	2563665	rs2524045	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.13	rs2524045-G	NR	7E-11		0.022607	[0.016-0.029] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_dbb_hap3	2564191	2564192	rs28367657	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.13	rs28367657-A	NR	1E-12		0.0243391	[0.018-0.031] unit decrease	Affymetrix [323123] (imputed)	N
604	chr6_dbb_hap3	2564722	2564723	rs9366778	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR		HLA-C	rs9366778-G	0.626619	3E-11		0.018043	[0.013-0.023] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
604	chr6_dbb_hap3	2565035	2565036	rs2844592	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gastric polyp	6,155 European ancestry cases, 341,871 European ancestry controls, 1,337 East Asian ancestry cases, 158,249 East Asian ancestry controls	NA	6p21.33		rs2844592-G	NR	4E-8		0.0998	[0.064-0.135] unit increase	Affymetrix, Illumina [20456140] (imputed)	N
604	chr6_dbb_hap3	2565242	2565243	rs114985235	26891255	Jung ES	2016-02-18	Inflamm Bowel Dis	HLA-C*01 is a Risk Factor for Crohn's Disease.	Crohn's disease	275 Korean ancestry cases, 2,369 Korean ancestry controls	242 Korean ancestry cases, 1,066 Korean ancestry controls	6p21.33	HLA-B, HLA-C	rs114985235-C	0.12	9E-23		2.25	[1.91-2.66]	Affymetrix [3387207] (imputed)	N
604	chr6_dbb_hap3	2565495	2565496	rs12211087	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Depression	at least 5,919 European ancestry cases, at least 130,691 European ancestry controls	634,037 European ancestry cases, 1,308,690 European ancestry controls	6p21.33	XXbac, BPG248L24.13	rs12211087-T	0.09841	2E-6		0.018283794	[0.0097-0.0269] unit decrease	NR [9417325] (imputed)	N
604	chr6_dbb_hap3	2565731	2565732	rs9468939	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.13	rs9468939-C	NR	6E-9		0.0177651	[0.012-0.024] unit decrease	Affymetrix [321016] (imputed)	N
604	chr6_dbb_hap3	2565904	2565905	rs9264798	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p21.33		rs9264798-C	0.826	9E-36				Affymetrix [10369434] (imputed)	N
604	chr6_dbb_hap3	2565952	2565953	rs9264801	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.33		rs9264801-C	0.826	5E-63				Affymetrix [10369434] (imputed)	N
604	chr6_dbb_hap3	2566345	2566346	rs142628781	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.33		rs142628781-T	0.070905	3E-14		1.080437	[1.06-1.1]	Affymetrix, Illumina [9851866] (imputed)	N
604	chr6_dbb_hap3	2566623	2566624	rs9264845	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs9264845-C	0.258	3E-16	(MHC class I polypeptide-related sequence B, MICB.5102.55.3)	0.26	[0.2-0.32] unit decrease	Affymetrix [10572788] (imputed)	N
604	chr6_dbb_hap3	2567114	2567115	rs7750963	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large VLDL	115,082 European ancestry individuals	NA	6p21.33		rs7750963-A	0.298149	7E-13		0.0308157	[0.022-0.039] unit decrease	NR [11722792] (imputed)	N
604	chr6_dbb_hap3	2567114	2567115	rs7750963	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large VLDL	115,082 European ancestry individuals	NA	6p21.33		rs7750963-A	0.298149	3E-12		0.0302555	[0.022-0.039] unit decrease	NR [11722792] (imputed)	N
604	chr6_dbb_hap3	2567114	2567115	rs7750963	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6p21.33		rs7750963-A	0.298149	7E-9		0.0250346	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
604	chr6_dbb_hap3	2567114	2567115	rs7750963	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs7750963-G	0.882	8E-43	(Killer cell immunoglobulin-like receptor 2DS2, KIR2DS2.10428.1.3)	0.59	[0.51-0.67] unit decrease	Affymetrix [10572788] (imputed)	N
604	chr6_dbb_hap3	2567263	2567264	rs9461688	18464913	Melzer D	2008-05-09	PLoS Genet	A genome-wide association study identifies protein quantitative trait loci (pQTLs).	Protein quantitative trait loci	1,200 European ancestry individuals	up to 4,590 European ancestry individuals	6p21.33	HLA-C	rs9461688-?	0.31	4E-6	(IL18)			Illumina [496032]	N
604	chr6_dbb_hap3	2567282	2567283	rs9264875	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Lectin-like oxidized LDL receptor 1 levels	21,758 European ancestry individuals	9,173 individuals	6p21.33		rs9264875-C	0.12	2E-9		0.092	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
604	chr6_dbb_hap3	2567748	2567749	rs556990455	32534018	Liu X	2020-06-10	Brain Behav Immun	Genetic factors underlying the bidirectional relationship between autoimmune and mental disorders - findings from a Danish population-based study.	Autoimmune traits	1,383 Danish ancestry cases, 62,656 Danish ancestry controls	NA	6p21.33	NR	rs556990455-T	0.016	7E-11		2.23	[1.79-2.77]	NR [7721839] (imputed)	N
604	chr6_dbb_hap3	2567808	2567809	rs6457374	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs6457374-T	0.753	2E-34	(MHC class I polypeptide-related sequence B, MICB.5102.55.3)	0.39	[0.33-0.45] unit increase	Affymetrix [10572788] (imputed)	N
604	chr6_dbb_hap3	2567808	2567809	rs6457374	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	6p21.33	HLA-C	rs6457374-T	0.73	8E-35		0.041	[0.035-0.047] unit decrease	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
604	chr6_dbb_hap3	2567868	2567869	rs9368677	23042114	Hirota T	2012-10-07	Nat Genet	Genome-wide association study identifies eight new susceptibility loci for atopic dermatitis in the Japanese population.	Atopic dermatitis	1,472 Japanese ancestry cases, 7,971 Japanese ancestry controls	1,856 Japanese ancestry cases, 7,021 Japanese ancestry controls	6p21.33	HLA-C	rs9368677-G	0.798	1E-17		1.36	[1.27-1.46]	Illumina [606164]	N
604	chr6_dbb_hap3	2568100	2568101	rs9264904	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.33		rs9264904-G	0.739	4E-158				Affymetrix [10369434] (imputed)	N
604	chr6_dbb_hap3	2568100	2568101	rs9264904	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.10	rs9264904-A	NR	3E-11		0.0214122	[0.015-0.028] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_dbb_hap3	2568100	2568101	rs9264904	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.10	rs9264904-A	NR	8E-11		0.0209999	[0.015-0.027] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_dbb_hap3	2568100	2568101	rs9264904	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.10	rs9264904-A	NR	8E-9		0.0188102	[0.012-0.025] unit increase	Affymetrix [321169] (imputed)	N
604	chr6_dbb_hap3	2568100	2568101	rs9264904	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	6p21.33	XXbac-BPG248L24.13	rs9264904-A	0.260825	6E-13		0.019344117	[0.014-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
604	chr6_dbb_hap3	2568100	2568101	rs9264904	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	6p21.33	NR	rs9264904-A	0.262119	3E-387		0.091059	[0.087-0.095] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
604	chr6_dbb_hap3	2569044	2569045	rs2508008	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p21.33	NR	rs2508008-G	0.119	3E-6	(IFNAR2_of_CD8p_T)			Illumina [5084123] (imputed)	N
604	chr6_dbb_hap3	2569292	2569293	rs3873386	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.10	rs3873386-C	NR	9E-11		0.0189406	[0.013-0.025] unit decrease	Affymetrix [321016] (imputed)	N
604	chr6_dbb_hap3	2569574	2569575	rs1634761	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.10	rs1634761-T	NR	6E-12		0.0193034	[0.014-0.025] unit decrease	Affymetrix [321016] (imputed)	N
604	chr6_dbb_hap3	2569574	2569575	rs1634761	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.10	rs1634761-T	NR	1E-13		0.0211552	[0.016-0.027] unit increase	Affymetrix [321169] (imputed)	N
604	chr6_dbb_hap3	2569845	2569846	rs9264941	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	6p21.33	XXbac-BPG248L24.13	rs9264941-A	0.167	6E-44		0.066809	[0.057-0.076] unit increase	Affymetrix [~ 2500000] (imputed)	N
604	chr6_dbb_hap3	2569927	2569928	rs9264942	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	6p21.33	NR	rs9264942-?	NR	5E-25	(EA)			Affymetrix, Illumina [~ 9000000] (imputed)	N
604	chr6_dbb_hap3	2569927	2569928	rs9264942	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Crohn's disease	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls	6p21.33	PSORS1C1, NFKBIL1, HLA-C, MICB	rs9264942-C	0.378	5E-28		1.145	[1.107-1.184]	Affymetrix, Illumina [1230000] (imputed)	N
604	chr6_dbb_hap3	2569927	2569928	rs9264942	21051598	Pereyra F	2010-11-04	Science	The major genetic determinants of HIV-1 control affect HLA class I peptide presentation.	HIV-1 control	516 European cases, 1,196 European controls, 341 African American cases, 892 African American controls, 117 Hispanic cases, 560 Hispanic controls	NA	6p21.33	HLA-C	rs9264942-C	0.34	3E-35	(EA)	2.9	[NR]	Illumina [1384048] (imputed)	N
604	chr6_dbb_hap3	2569927	2569928	rs9264942	20041166	Fellay J	2009-12-24	PLoS Genet	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	6p21.33	HLA-C	rs9264942-C	0.412	6E-32	(setpoint)	5.3	[NR] % increase	Illumina [NR]	N
604	chr6_dbb_hap3	2569927	2569928	rs9264942	20041166	Fellay J	2009-12-24	PLoS Genet	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	6p21.33	HLA-C	rs9264942-?	NR	6E-12	(progression)			Illumina [NR]	N
604	chr6_dbb_hap3	2570102	2570103	rs10484554	33385400	Patrick MT	2020-12-29	J Invest Dermatol	Causal relationship and shared genetic loci between psoriasis and type 2 diabetes through trans-disease meta-analysis.	Psoriasis or type 2 diabetes (trans-disease meta-analysis)(opposite effect)	11,024 European ancestry psoriasis cases, 74,124 European ancestry diabetes cases, 840,342 European ancestry controls	NA	6p21.33	NR	rs10484554-T		2E-302		1.67		NR [8016731] (imputed)	N
604	chr6_dbb_hap3	2570102	2570103	rs10484554	26626624	Stuart PE	2015-11-28	Am J Hum Genet	Genome-wide Association Analysis of Psoriatic Arthritis and Cutaneous Psoriasis Reveals Differences in Their Genetic Architecture.	Cutaneous psoriasis	1,363 European ancestry cases, 4,934 European ancestry controls	up to 2,969 European ancestry cases, up to European ancestry 14,384 controls	6p21.33	HLA, HLA-C	rs10484554-T	NR	4E-207		3.304	NR	Illumina [11532644] (imputed)	N
604	chr6_dbb_hap3	2570102	2570103	rs10484554	20953190	Strange A	2010-10-17	Nat Genet	A genome-wide association study identifies new psoriasis susceptibility loci and an interaction between HLA-C and ERAP1.	Psoriasis	2,178 European ancestry cases, 5,175 European ancestry controls	3,174 European ancestry cases, 5,464 European ancestry controls	6p21.33	HLA-C	rs10484554-?	NR	4E-214		4.66	[4.23-5.13]	Illumina [535475]	N
604	chr6_dbb_hap3	2570102	2570103	rs10484554	19115949	Limou S	2009-01-01	J Infect Dis	Genomewide association study of an AIDS-nonprogression cohort emphasizes the role played by HLA genes (ANRS Genomewide Association Study 02).	AIDS progression	275 European ancestry seropositive non-progressors, 86 European ancestry seropositive rapid progressors, 1,352 European ancestry seronegative controls	(see Fellay 2007)	6p21.33	HLA-C	rs10484554-T	0.13	6E-8				Illumina [291119]	N
604	chr6_dbb_hap3	2570102	2570103	rs10484554	18369459	Liu Y	2008-04-04	PLoS Genet	A genome-wide association study of psoriasis and psoriatic arthritis identifies new disease loci.	Psoriasis	218 European ancestry cases, 519 European ancestry controls	1,153 European ancestry cases, 1,217 European ancestry controls	6p21.33	HLA-C	rs10484554-T	0.15	2E-39		2.8	[2.40-3.30]	Illumina [305983]	N
604	chr6_dbb_hap3	2570133	2570134	rs9348865	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.10	rs9348865-G	NR	4E-10		0.0204625	[0.014-0.027] unit increase	Affymetrix [323858] (imputed)	N
604	chr6_dbb_hap3	2570133	2570134	rs9348865	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.10	rs9348865-G	NR	3E-9		0.0194694	[0.013-0.026] unit increase	Affymetrix [127266] (imputed)	N
604	chr6_dbb_hap3	2570133	2570134	rs9348865	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6p21.33	XXbac-BPG248L24.10	rs9348865-G	0.351828	2E-14		0.024740536	[0.018-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
604	chr6_dbb_hap3	2570174	2570175	rs9264945	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	6p21.33	XXbac-BPG248L24.10	rs9264945-A	0.133478	2E-29		0.0345332	[0.028-0.041] unit increase	Affymetrix [93095623] (imputed)	N
604	chr6_dbb_hap3	2570240	2570241	rs3094691	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.10	rs3094691-A	NR	1E-9		0.0192715	[0.013-0.025] unit increase	Affymetrix [323858] (imputed)	N
604	chr6_dbb_hap3	2570240	2570241	rs3094691	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.10	rs3094691-A	NR	2E-8		0.0178577	[0.012-0.024] unit increase	Affymetrix [127266] (imputed)	N
604	chr6_dbb_hap3	2570240	2570241	rs3094691	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.10	rs3094691-A	NR	4E-15		0.0225202	[0.017-0.028] unit increase	Affymetrix [321169] (imputed)	N
604	chr6_dbb_hap3	2570299	2570300	rs3132479	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.10	rs3132479-G	NR	2E-12		0.019918	[0.014-0.025] unit decrease	Affymetrix [321016] (imputed)	N
604	chr6_dbb_hap3	2570299	2570300	rs3132479	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.10	rs3132479-G	NR	3E-14		0.0234978	[0.017-0.03] unit decrease	Affymetrix [323123] (imputed)	N
604	chr6_dbb_hap3	2570299	2570300	rs3132479	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	6p21.33	XXbac-BPG248L24.10	rs3132479-A	0.5388	2E-7		0.0369	[0.023-0.051] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
604	chr6_dbb_hap3	2570299	2570300	rs3132479	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Perceived unattractiveness to mosquitoes	16,576 European ancestry individuals	NA	6p21.33	HLA-C, MICA	rs3132479-G	0.466	6E-7		0.11555	[0.07-0.161] unit decrease	Illumina [7433384] (imputed)	N
604	chr6_dbb_hap3	2570341	2570341	rs540653847	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6p21.33	XXbac-BPG248L24.10	rs540653847-GC	0.00672899999999999	3E-18		0.12216329	[0.095-0.15] unit increase	Affymetrix [93095623] (imputed)	N
604	chr6_dbb_hap3	2570341	2570341	rs540653847	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	6p21.33	XXbac-BPG248L24.10	rs540653847-GC	0.0064	8E-9		0.1328338	[0.088-0.178] unit increase	Affymetrix [~ 2500000] (imputed)	N
604	chr6_dbb_hap3	2570341	2570341	rs540653847	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	6p21.33	XXbac-BPG248L24.10	rs540653847-GC	0.0064	6E-10		0.1418412	[0.097-0.187] unit increase	Affymetrix [~ 2500000] (imputed)	N
604	chr6_dbb_hap3	2570366	2570366	rs5875308	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.33	XXbac-BPG248L24.10	rs5875308-CA	0.2653	7E-6		0.0365	[0.021-0.052] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
604	chr6_dbb_hap3	2571204	2571205	rs3873387	29532581	Hallfors J	2018-03-13	Addict Biol	Genome-wide association study in Finnish twins highlights the connection between nicotine addiction and neurotrophin signaling pathway.	Smoking behaviour (maximum cigarettes in a 24 hour period)	1,711 Finnish ancestry ever smoker individuals from up to 739 families	NA	6p21.33	NR	rs3873387-A	0.24743	1E-6		2.706126	[1.61-3.80] unit decrease	Illumina [9469131] (imputed)	N
604	chr6_dbb_hap3	2571368	2571369	rs3873388	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.10	rs3873388-G	NR	8E-10		0.0213529	[0.015-0.028] unit decrease	Affymetrix [323123] (imputed)	N
604	chr6_dbb_hap3	2571855	2571856	rs1634794	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.33	Intergenic	rs1634794-T	NR	7E-10	(women)	0.0287016	[0.02-0.038] unit decrease	Illumina [13520550] (imputed)	N
604	chr6_dbb_hap3	2571976	2571977	rs9264962	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.33	Intergenic	rs9264962-G	NR	8E-13		0.0264842	[0.019-0.034] unit increase	Illumina [13520550] (imputed)	N
604	chr6_dbb_hap3	2571988	2571989	rs1005599	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small HDL	115,082 European ancestry individuals	NA	6p21.33		rs1005599-G	0.289198	3E-16		0.0361878	[0.028-0.045] unit decrease	NR [11722792] (imputed)	N
604	chr6_dbb_hap3	2571988	2571989	rs1005599	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium HDL	115,082 European ancestry individuals	NA	6p21.33		rs1005599-G	0.289198	5E-16		0.0364668	[0.028-0.045] unit decrease	NR [11722792] (imputed)	N
604	chr6_dbb_hap3	2571988	2571989	rs1005599	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in HDL	115,082 European ancestry individuals	NA	6p21.33		rs1005599-G	0.289198	2E-15		0.0354759	[0.027-0.044] unit decrease	NR [11722792] (imputed)	N
604	chr6_dbb_hap3	2571988	2571989	rs1005599	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small HDL	115,082 European ancestry individuals	NA	6p21.33		rs1005599-G	0.289198	1E-19		0.0413294	[0.032-0.05] unit decrease	NR [11722792] (imputed)	N
604	chr6_dbb_hap3	2571988	2571989	rs1005599	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total fatty acid levels	115,006 European ancestry individuals	NA	6p21.33		rs1005599-G	0.289208	7E-21		0.0423272	[0.033-0.051] unit decrease	NR [11722792] (imputed)	N
604	chr6_dbb_hap3	2571988	2571989	rs1005599	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Saturated fatty acid levels	115,006 European ancestry individuals	NA	6p21.33		rs1005599-G	0.289208	7E-16		0.0364401	[0.028-0.045] unit decrease	NR [11722792] (imputed)	N
604	chr6_dbb_hap3	2571988	2571989	rs1005599	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small HDL	115,082 European ancestry individuals	NA	6p21.33		rs1005599-G	0.289198	8E-20		0.0413457	[0.032-0.05] unit decrease	NR [11722792] (imputed)	N
604	chr6_dbb_hap3	2571988	2571989	rs1005599	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Monounsaturated fatty acid levels	115,006 European ancestry individuals	NA	6p21.33		rs1005599-G	0.289208	4E-19		0.040361	[0.032-0.049] unit decrease	NR [11722792] (imputed)	N
604	chr6_dbb_hap3	2571988	2571989	rs1005599	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycoprotein acetyls levels	115,082 European ancestry individuals	NA	6p21.33		rs1005599-G	0.289198	4E-32		0.0533982	[0.045-0.062] unit decrease	NR [11722792] (imputed)	N
604	chr6_dbb_hap3	2572318	2572319	rs1634791	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total free cholesterol levels	115,082 European ancestry individuals	NA	6p21.33		rs1634791-A	0.450407	2E-10		0.0263105	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
604	chr6_dbb_hap3	2572318	2572319	rs1634791	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total esterified cholesterol levels	115,082 European ancestry individuals	NA	6p21.33		rs1634791-A	0.450407	6E-11		0.0267294	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
604	chr6_dbb_hap3	2572318	2572319	rs1634791	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol levels	115,082 European ancestry individuals	NA	6p21.33		rs1634791-A	0.450407	7E-11		0.0267605	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
604	chr6_dbb_hap3	2572318	2572319	rs1634791	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Sphingomyelin levels	115,006 European ancestry individuals	NA	6p21.33		rs1634791-A	0.450416	2E-11		0.0265776	[0.019-0.034] unit decrease	NR [11722792] (imputed)	N
604	chr6_dbb_hap3	2572318	2572319	rs1634791	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in LDL	115,082 European ancestry individuals	NA	6p21.33		rs1634791-A	0.450407	7E-10		0.0260256	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
604	chr6_dbb_hap3	2572318	2572319	rs1634791	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	6p21.33	NR	rs1634791-A	0.455909	8E-23		0.011832	[0.0093-0.0143] unit increase	Affymetrix [16585854] (imputed)	N
604	chr6_dbb_hap3	2572318	2572319	rs1634791	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	6p21.33	NR	rs1634791-A	0.455909	1E-12		0.0102161	[0.0074-0.0131] unit increase	Affymetrix [16585866] (imputed)	N
604	chr6_dbb_hap3	2574691	2574692	rs9265153	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Angiopoietin-1 receptor levels	21,758 European ancestry individuals	9,173 individuals	6p21.33		rs9265153-C	0.37	1E-10		0.0638	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
604	chr6_dbb_hap3	2574755	2574756	rs7748141	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PDIA5	5,366 Icelandic ancestry individuals	NA	6p21.33		rs7748141-C	0.07983	2E-47		0.504487	[0.44-0.57] unit increase	Illumina [7506463] (imputed)	N
604	chr6_dbb_hap3	2578402	2578403	rs142174523	31594949	Nievergelt CM	2019-10-08	Nat Commun	International meta-analysis of PTSD genome-wide association studies identifies sex- and ancestry-specific genetic risk loci.	Post-traumatic stress disorder	23,212 European ancestry cases, 4,363 African ancestry cases, 1,981 Latino and Native American ancestry cases, 151,447 European ancestry controls, 10,976 African ancestry controls, 3,722 Latino and Native American ancestry controls	NA	6p21.33	NR	rs142174523-G	NR	4E-8	(African, male)	1.3157895	[1.19-1.45]	Affymetrix, Illumina [~ 1175791] (imputed)	N
604	chr6_dbb_hap3	2579021	2579022	rs117309887	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PCSK7	5,355 Icelandic ancestry individuals	NA	6p21.33		rs117309887-T	0.09768	2E-14		0.238034	[0.18-0.3] unit increase	Illumina [7506463] (imputed)	N
604	chr6_dbb_hap3	2580491	2580492	rs116576188	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs116576188-C	0.116	2E-22	(Ubiquitin carboxyl-terminal hydrolase 25, USP25.9215.117.3)	0.38	[0.3-0.46] unit increase	Affymetrix [10572788] (imputed)	N
604	chr6_dbb_hap3	2580510	2580511	rs114046333	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p21.33	NR	rs114046333-?	NR	1E-14		0.2802	[0.21-0.35] unit decrease	Illumina [at least 560000] (imputed)	N
604	chr6_dbb_hap3	2580531	2580532	rs3094685	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DNAJC10	5,351 Icelandic ancestry individuals	NA	6p21.33		rs3094685-T	0.2128	3E-35		0.266011	[0.22-0.31] unit increase	Illumina [7506463] (imputed)	N
604	chr6_dbb_hap3	2580656	2580657	rs3130703	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 23)	2,187 European ancestry individuals	NA	6p21.33	NR	rs3130703-C	0.2795	4E-7		0.1707	[0.1-0.24] unit increase	Illumina [10677593] (imputed)	N
604	chr6_dbb_hap3	2583837	2583838	rs28895001	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.33		rs28895001-T	0.163489	8E-27		0.045384236	[0.037-0.054] unit decrease	Affymetrix [93095623] (imputed)	N
604	chr6_dbb_hap3	2584394	2584395	rs7772894	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on memory B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs7772894-T	0.10721	3E-9		0.2956	[0.2-0.39] unit increase	Illumina [18238311] (imputed)	N
604	chr6_dbb_hap3	2584394	2584395	rs7772894	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on CD24+ CD27+ B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs7772894-T	0.10721	3E-9		0.2945	[0.2-0.39] unit increase	Illumina [18238311] (imputed)	N
604	chr6_dbb_hap3	2584758	2584759	rs17192757	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling miserable	376,097 European ancestry individuals	NA	6p21.33	PSORS1C1	rs17192757-A	0.132647	5E-8		5.46	z score increase	NR [10847151] (imputed)	N
604	chr6_dbb_hap3	2584790	2584790	rs111743557	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-B	rs111743557-TTG	NR	5E-9		0.0221507	[0.015-0.03] unit decrease	Affymetrix [323858] (imputed)	N
604	chr6_dbb_hap3	2584790	2584790	rs111743557	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HLA-B	rs111743557-TTG	NR	2E-8		0.0212612	[0.014-0.029] unit decrease	Affymetrix [127266] (imputed)	N
604	chr6_dbb_hap3	2584790	2584790	rs111743557	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.33	NR	rs111743557-T	0.888	2E-18	(conditional)	0.729	[0.66-0.8]	Illumina [11270530] (imputed)	N
604	chr6_dbb_hap3	2584977	2584978	rs9265620	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	6p21.33		rs9265620-T	0.629786	1E-11		0.0263927	[0.019-0.034] unit decrease	NR [11722792] (imputed)	N
604	chr6_dbb_hap3	2584977	2584978	rs9265620	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	6p21.33		rs9265620-T	0.629787	7E-13		0.0279211	[0.02-0.036] unit increase	NR [11722792] (imputed)	N
604	chr6_dbb_hap3	2585576	2585577	rs6902116	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	6p21.33	HLA-B	rs6902116-A	0.677972	2E-40		0.0274179	[0.023-0.031] unit increase	Affymetrix [NR] (imputed)	N
604	chr6_dbb_hap3	2586109	2586110	rs12212594	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Psoriasis vulgaris	5,072 European ancestry cases, 478,102 European ancestry controls, 206 East Asian ancestry cases, 172,289 East Asian ancestry controls	NA	6p21.33		rs12212594-C	NR	5E-209		1.4454	[1.35-1.54] unit increase	Affymetrix, Illumina [25844455] (imputed)	N
604	chr6_dbb_hap3	2586629	2586630	rs6908001	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	6p21.33		rs6908001-C	NR	4E-36		0.0278	[0.023-0.032] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
604	chr6_dbb_hap3	2586932	2586933	rs28752871	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	76 Han Chinese ancestry cases, 889 Han Chinese ancestry controls	NA	6p21.33	HLA-B	rs28752871-?	NR	5E-8	(conditional on rs12110437 and rs1264697)			Illumina [3403929] (imputed)	N
604	chr6_dbb_hap3	2587820	2587821	rs9265742	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CPXM1	5,363 Icelandic ancestry individuals	NA	6p21.33		rs9265742-A	0.2045	4E-12		0.162501	[0.12-0.21] unit decrease	Illumina [7506463] (imputed)	N
604	chr6_dbb_hap3	2587939	2587940	rs11968046	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	6p21.33		rs11968046-C	0.772833	5E-11		0.0309702	[0.022-0.04] unit decrease	NR [11722792] (imputed)	N
604	chr6_dbb_hap3	2587939	2587940	rs11968046	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	6p21.33		rs11968046-C	0.772833	2E-10		0.0301683	[0.021-0.04] unit decrease	NR [11722792] (imputed)	N
604	chr6_dbb_hap3	2587939	2587940	rs11968046	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	6p21.33		rs11968046-C	0.772833	2E-10		0.030047	[0.021-0.039] unit decrease	NR [11722792] (imputed)	N
604	chr6_dbb_hap3	2587939	2587940	rs11968046	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Triglyceride levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	6p21.33	HLA-C, HLA-B	rs11968046-?		2E-11		0.0605	[0.043-0.078] unit decrease	Illumina [31500000] (imputed)	N
604	chr6_dbb_hap3	2588015	2588016	rs9265745	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.33		rs9265745-A	0.591	7E-36				Affymetrix [10369434] (imputed)	N
604	chr6_dbb_hap3	2588573	2588574	rs1634774	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.33		rs1634774-A	0.68	1E-34				Affymetrix [10369434] (imputed)	N
604	chr6_dbb_hap3	2588577	2588578	rs28752890	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs28752890-A	NR	2E-12		0.0210684	[0.015-0.027] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_dbb_hap3	2588577	2588578	rs28752890	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs28752890-A	NR	1E-11		0.0202141	[0.014-0.026] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_dbb_hap3	2588577	2588578	rs28752890	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs28752890-A	NR	4E-11		0.0198841	[0.014-0.026] unit increase	Affymetrix [321169] (imputed)	N
604	chr6_dbb_hap3	2588622	2588623	rs114444221	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	6p21.33	HLA-B	rs114444221-?	NR	9E-18		1.133	[1.1-1.16]	Affymetrix [9000000] (imputed)	N
604	chr6_dbb_hap3	2588622	2588623	rs114444221	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	6p21.33	HLA-B	rs114444221-A	NR	9E-16		1.134	[1.1-1.17]	Affymetrix [9000000] (imputed)	N
604	chr6_dbb_hap3	2589178	2589179	rs28752923	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6p21.33		rs28752923-?	NR	4E-10		0.9344	[0.91-0.96]	NR [685523]	N
604	chr6_dbb_hap3	2589221	2589222	rs28752924	34454985	Sliz E	2021-08-26	J Allergy Clin Immunol	Uniting biobank resources reveals novel genetic pathways modulating susceptibility for atopic dermatitis.	Atopic dermatitis	22,474 European ancestry cases, 774,187 European ancestry controls	NA	6p21.33	NR	rs28752924-t	0.6336	5E-11		1.1	[1.07-1.14]	Affymetrix, Illumina [16201029] (imputed)	N
604	chr6_dbb_hap3	2589591	2589592	rs28752936	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs28752936-A	NR	5E-11		0.0187215	[0.013-0.024] unit increase	Affymetrix [321169] (imputed)	N
604	chr6_dbb_hap3	2589695	2589696	rs1634769	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p21.33	NR	rs1634769-A	0.649245	2E-13		0.026251458	[0.019-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
604	chr6_dbb_hap3	2589788	2589789	rs380852	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6p21.33	NR	rs380852-T	0.05472	7E-15		1.107	[1.08-1.135]	Affymetrix [15688218] (imputed)	N
604	chr6_dbb_hap3	2589934	2589935	rs28752949	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs28752949-A	NR	3E-9		0.0170482	[0.011-0.023] unit decrease	Affymetrix [321016] (imputed)	N
604	chr6_dbb_hap3	2590935	2590936	rs1631951	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p21.33	NR	rs1631951-T	0.18	4E-12		1.15	[1.11-1.2]	Affymetrix [9886854] (imputed)	N
604	chr6_dbb_hap3	2590935	2590936	rs1631951	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p21.33	NR	rs1631951-T	0.18	6E-17			[NR]	Affymetrix [9886854] (imputed)	N
604	chr6_dbb_hap3	2590935	2590936	rs1631951	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p21.33	NR	rs1631951-T	0.18	2E-15		1.13	[1.1-1.16]	Affymetrix [9886854] (imputed)	N
604	chr6_dbb_hap3	2590935	2590936	rs1631951	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p21.33	NR	rs1631951-T	0.18	3E-16			[NR]	Affymetrix [9886854] (imputed)	N
604	chr6_dbb_hap3	2590935	2590936	rs1631951	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in non-current smokers	16,488 European ancestry cases, 169,688 European ancestry controls	NA	6p21.33	NR	rs1631951-T	0.18	2E-15		1.13	[1.1-1.16]	Affymetrix [9886854] (imputed)	N
604	chr6_dbb_hap3	2590935	2590936	rs1631951	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in never smokers	8,631 European ancestry cases, 120,544 European ancestry controls	NA	6p21.33	NR	rs1631951-T	0.18	3E-12		1.15	[1.11-1.2]	Affymetrix [9886854] (imputed)	N
604	chr6_dbb_hap3	2590935	2590936	rs1631951	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in ever smokers	12,446 European ancestry cases, 59,145 European ancestry controls	NA	6p21.33	NR	rs1631951-T	0.18	4E-7		1.1	[1.06-1.14]	Affymetrix [9886854] (imputed)	N
604	chr6_dbb_hap3	2591025	2591026	rs28367832	32004448	Savage SA	2020-01-30	Am J Hum Genet	Genome-wide Association Study Identifies HLA-DPB1 as a Significant Risk Factor for Severe Aplastic Anemia.	Severe aplastic anemia	359 European ancestry cases, 1,396 European ancestry controls	175 European ancestry cases, 1,059 European ancestry controls	6p21.33	HLA-B	rs28367832-?	NR	7E-9		1.49	[1.22-1.78]	Illumina [688067]	N
604	chr6_dbb_hap3	2591715	2591716	rs1625792	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Help-seeking from a GP	113,262 British ancestry cases, 219,360 British ancestry controls	NA	6p21.33	NR	rs1625792-G	0.853	5E-8		1.0405828	[1.03-1.05]	NR [5276842] (imputed)	N
604	chr6_dbb_hap3	2591715	2591716	rs1625792	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p21.33	NR	rs1625792-?	NR	1E-7		5.298	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
604	chr6_dbb_hap3	2594152	2594153	rs1622406	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	HLA-B, HLA-C, XXbac-BPG248L24.12, MICB, USP8P1, RPL3P2, MIR6891, PPIAP9, XXbac-BPG16N22.5	rs1622406-T	0.03009027	7E-63	(EA, Alpha-2-macroglobulin receptor-associated protein)	2.011	[1.79-2.23] unit increase	Affymetrix [509946]	N
604	chr6_dbb_hap3	2594547	2594548	rs34872474	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.33		rs34872474-G	0.0764200000000001	2E-15		0.042707935	[0.032-0.053] unit decrease	Affymetrix [93095623] (imputed)	N
604	chr6_dbb_hap3	2594733	2594734	rs113021938	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	6p21.33		rs113021938-G	0.027345	2E-14		0.052308656	[0.039-0.066] unit decrease	Affymetrix [93095623] (imputed)	N
604	chr6_dbb_hap3	2596533	2596534	rs2854011	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.33		rs2854011-G	0.848	4E-80				Affymetrix [10369434] (imputed)	N
604	chr6_dbb_hap3	2596533	2596534	rs2854011	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p21.33		rs2854011-G	0.848	4E-55				Affymetrix [10369434] (imputed)	N
604	chr6_dbb_hap3	2596617	2596618	rs28380833	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs28380833-?		8E-9		1.8	[1.47-2.20]	Illumina [7645193] (imputed)	N
604	chr6_dbb_hap3	2596676	2596677	rs9265828	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6p21.33		rs9265828-G	0.569472	1E-13		0.026239738	[0.019-0.033] unit increase	Affymetrix [93095623] (imputed)	N
604	chr6_dbb_hap3	2596697	2596698	rs9265830	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs9265830-A	NR	5E-28		0.0333407	[0.027-0.039] unit decrease	Affymetrix [319769] (imputed)	N
604	chr6_dbb_hap3	2596697	2596698	rs9265830	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs9265830-A	NR	3E-26		0.0322127	[0.026-0.038] unit decrease	Affymetrix [319769] (imputed)	N
604	chr6_dbb_hap3	2596697	2596698	rs9265830	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs9265830-A	NR	1E-8		0.0174211	[0.011-0.023] unit decrease	Affymetrix [321114] (imputed)	N
604	chr6_dbb_hap3	2596697	2596698	rs9265830	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs9265830-A	NR	4E-25		0.0318177	[0.026-0.038] unit decrease	Affymetrix [321169] (imputed)	N
604	chr6_dbb_hap3	2597233	2597234	rs2394976	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to omega-3 fatty acids	115,006 European ancestry individuals	NA	6p21.33		rs2394976-G	0.838358	5E-9		0.0315075	[0.021-0.042] unit decrease	NR [11722792] (imputed)	N
604	chr6_dbb_hap3	2597369	2597370	rs2394977	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-B	rs2394977-G	NR	2E-12		0.0222252	[0.016-0.028] unit increase	Affymetrix [323858] (imputed)	N
604	chr6_dbb_hap3	2597369	2597370	rs2394977	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HLA-B	rs2394977-G	NR	4E-11		0.0207721	[0.015-0.027] unit increase	Affymetrix [127266] (imputed)	N
604	chr6_dbb_hap3	2597369	2597370	rs2394977	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-B	rs2394977-G	NR	6E-20		0.028162	[0.022-0.034] unit decrease	Affymetrix [323123] (imputed)	N
604	chr6_dbb_hap3	2597370	2597371	rs2256752	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	6p21.33	intergenic	rs2256752-C	0.3515	2E-13		0.02753249	[0.02-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
604	chr6_dbb_hap3	2597607	2597608	rs4521636	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-B	rs4521636-T	NR	2E-9		0.0186949	[0.013-0.025] unit decrease	Affymetrix [323858] (imputed)	N
604	chr6_dbb_hap3	2597607	2597608	rs4521636	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HLA-B	rs4521636-T	NR	2E-8		0.0174949	[0.011-0.024] unit decrease	Affymetrix [127266] (imputed)	N
604	chr6_dbb_hap3	2597607	2597608	rs4521636	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-B	rs4521636-T	NR	2E-16		0.0251493	[0.019-0.031] unit increase	Affymetrix [323123] (imputed)	N
604	chr6_dbb_hap3	2597643	2597644	rs3134792	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.33	intergenic	rs3134792-C	0.114	6E-72		3.93	[NR]	Illumina [242824]	N
604	chr6_dbb_hap3	2597643	2597644	rs3134792	18364390	Capon F	2008-03-25	Hum Mol Genet	Identification of ZNF313/RNF114 as a novel psoriasis susceptibility gene.	Psoriasis	318 European ancestry cases, 288 European ancestry controls	2,361 European ancestry cases, 1,927 European ancestry controls	6p21.33	HLA-C	rs3134792-?	NR	1E-9				Illumina [~ 408000]	N
604	chr6_dbb_hap3	2597855	2597856	rs2854008	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p21.33	NR	rs2854008-A	0.274988	5E-92				Affymetrix, Illumina [24332387] (imputed)	N
604	chr6_dbb_hap3	2597855	2597856	rs2854008	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	6p21.33	NR	rs2854008-A	0.293344	2E-97		0.04242	[0.038-0.046] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
604	chr6_dbb_hap3	2598348	2598349	rs2394982	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	6p21.33	intergenic	rs2394982-T	0.3056	8E-9		0.02209588	[0.015-0.03] unit increase	Affymetrix [~ 2500000] (imputed)	N
604	chr6_dbb_hap3	2598351	2598352	rs9265878	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs9265878-G	0.732	2E-102				Affymetrix [10369434] (imputed)	N
604	chr6_dbb_hap3	2598538	2598539	rs9265885	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	120,539 East Asian ancestry individuals	NA	6p21.33		rs9265885-C	0.425161	1E-20		0.0356702	[0.028-0.043] unit decrease	Illumina [13474682] (imputed)	N
604	chr6_dbb_hap3	2598576	2598577	rs9265888	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs9265888-T	NR	2E-8		0.0163341	[0.011-0.022] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_dbb_hap3	2598788	2598789	rs9265902	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.33		rs9265902-G	0.721	5E-33				Affymetrix [10369434] (imputed)	N
604	chr6_dbb_hap3	2598788	2598789	rs9265902	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-B	rs9265902-A	NR	1E-9		0.0207461	[0.014-0.027] unit decrease	Affymetrix [323123] (imputed)	N
604	chr6_dbb_hap3	2598788	2598789	rs9265902	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs9265902-A	NR	1E-8		0.0181136	[0.012-0.024] unit increase	Affymetrix [321169] (imputed)	N
604	chr6_dbb_hap3	2598919	2598920	rs9265906	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-B	rs9265906-C	NR	5E-8		0.0168982	[0.011-0.023] unit decrease	Affymetrix [323123] (imputed)	N
604	chr6_dbb_hap3	2598919	2598920	rs9265906	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs9265906-C	NR	4E-8		0.0157447	[0.01-0.021] unit increase	Affymetrix [321169] (imputed)	N
604	chr6_dbb_hap3	2599382	2599383	rs12175330	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-B	rs12175330-T	NR	1E-13		0.0240282	[0.018-0.03] unit decrease	Affymetrix [323123] (imputed)	N
604	chr6_dbb_hap3	2599382	2599383	rs12175330	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs12175330-T	NR	1E-8		0.0170347	[0.011-0.023] unit increase	Affymetrix [321169] (imputed)	N
604	chr6_dbb_hap3	2599422	2599423	rs3016018	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.33		rs3016018-C	NR	2E-14		1.132	[1.097-1.169]	Affymetrix [7846216] (imputed)	N
604	chr6_dbb_hap3	2599962	2599963	rs2507999	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Keratinocyte cancer (MTAG)	at least 18,538 European ancestry cases, at least 340,302 European ancestry controls	NA	6p21.33	HLA-B	rs2507999-A	0.328281	1E-10		1.0638298	[1.04-1.08]	Affymetrix [7600000] (imputed)	N
604	chr6_dbb_hap3	2600350	2600351	rs9265940	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs9265940-G	NR	3E-19		0.0271089	[0.021-0.033] unit increase	Affymetrix [321016] (imputed)	N
604	chr6_dbb_hap3	2600375	2600376	rs9265942	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	6p21.33		rs9265942-C	0.871684	4E-12		0.0455219	[0.033-0.058] unit decrease	NR [11722792] (imputed)	N
604	chr6_dbb_hap3	2600417	2600417	rs150481781	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	6p21.33		rs150481781-AGAGCTTCCCAATTGCT	NR	1E-30		0.0258	[0.021-0.03] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
604	chr6_dbb_hap3	2600553	2600554	rs28771425	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	CX3CL1 levels	21,758 European ancestry individuals	9,173 individuals	6p21.33		rs28771425-A	0.43	5E-19		0.099	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
604	chr6_dbb_hap3	2600672	2600673	rs9265954	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	6p21.33	HLA-B	rs9265954-T	0.0497	2E-18		0.0604	[0.047-0.074] unit increase	Affymetrix [18391927] (imputed)	N
604	chr6_dbb_hap3	2600696	2600697	rs9265956	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.33		rs9265956-T	0.324	2E-45				Affymetrix [10369434] (imputed)	N
604	chr6_dbb_hap3	2600739	2600739	rs111721712	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6p21.33		rs111721712-C	0.530439	2E-12		0.0293352	[0.021-0.037] unit increase	NR [11722792] (imputed)	N
604	chr6_dbb_hap3	2600739	2600739	rs111721712	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6p21.33		rs111721712-C	0.530439	1E-12		0.0294594	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
604	chr6_dbb_hap3	2600739	2600739	rs111721712	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	6p21.33		rs111721712-C	0.534	9E-42		0.15	[0.13-0.17] % increase	Affymetrix [NR] (imputed)	N
604	chr6_dbb_hap3	2600739	2600739	rs111721712	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs111721712-CT	NR	8E-10		0.0174035	[0.012-0.023] unit decrease	Affymetrix [321016] (imputed)	N
604	chr6_dbb_hap3	2600739	2600739	rs111721712	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	6p21.33	intergenic	rs111721712-CT	0.4708	1E-26		0.03814722	[0.031-0.045] unit increase	Affymetrix [~ 2500000] (imputed)	N
604	chr6_dbb_hap3	2600844	2600845	rs116685461	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	6p21.33	MHC	rs116685461-G	0.8755	3E-6		1.06	[1.04-1.09]	Affymetrix, Illumina [16900397] (imputed)	N
604	chr6_dbb_hap3	2600844	2600845	rs116685461	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	6p21.33	intergenic	rs116685461-A	0.098	5E-11		0.04047215	[0.028-0.053] unit decrease	Affymetrix [~ 2500000] (imputed)	N
604	chr6_dbb_hap3	2600960	2600961	rs9265965	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium HDL	115,082 European ancestry individuals	NA	6p21.33		rs9265965-T	0.867699	1E-14		0.0453236	[0.034-0.057] unit increase	NR [11722792] (imputed)	N
604	chr6_dbb_hap3	2600979	2600980	rs2523625	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Body fat percentage variance	341,632 European ancestry individuals	NA	6p21.33	HLA-B	rs2523625-?	NR	3E-10				NR [5554549] (imputed)	N
604	chr6_dbb_hap3	2600994	2600995	rs9265968	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	6p21.33	HLA-B	rs9265968-A	0.866272	1E-21		0.0201268	[0.016-0.024] unit decrease	Affymetrix [12370749]	N
604	chr6_dbb_hap3	2601791	2601792	rs116438126	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	6p21.33	intergenic	rs116438126-T	0.0084	6E-18		0.1721088	[0.13-0.21] unit increase	Affymetrix [~ 2500000] (imputed)	N
604	chr6_dbb_hap3	2601902	2601903	rs200291258	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atopic dermatitis	4,296 East Asian ancestry cases, 163,807 East Asian ancestry controls	NA	6p21.33		rs200291258-A	0.179174296	6E-15		0.25656497	[0.19-0.32] unit decrease	Illumina [13428180] (imputed)	N
604	chr6_dbb_hap3	2602091	2602092	rs5014819	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs5014819-T	NR	3E-15		0.0226584	[0.017-0.028] unit decrease	Affymetrix [321016] (imputed)	N
604	chr6_dbb_hap3	2602242	2602243	rs2923008	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in diabetes	70,762 European ancestry individuals, 20,967 African American individuals	NA	6p21.33	HLA-B	rs2923008-T	0.106	2E-12		1.017	[0.73-1.3] unit decrease	Affymetrix [NR] (imputed)	N
604	chr6_dbb_hap3	2603910	2603911	rs34213790	28062682	Carr DF	2017-01-05	J Antimicrob Chemother	Genome-wide association study of nevirapine hypersensitivity in a sub-Saharan African HIV-infected population.	Nevirapine-induced hypersensitivity in HIV	151 Sub-saharan African ancestry cases, 182 Sub-saharan African ancestry controls	62 Sub-Saharan African ancestry cases, 60 Sub-Saharan African ancestry controls	6p21.33	HLA-B	rs34213790-A	0.37	7E-7		2.06	[1.55-2.74]	Illumina [14218511] (imputed)	N
604	chr6_dbb_hap3	2603961	2603962	rs9266043	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-B	rs9266043-A	NR	8E-29		0.035895	[0.03-0.042] unit increase	Affymetrix [323123] (imputed)	N
604	chr6_dbb_hap3	2604116	2604117	rs2596505	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p21.33	NR	rs2596505-T	0.1681	1E-8		0.009	[0.0059-0.0121] unit decrease	NR [7666894] (imputed)	N
604	chr6_dbb_hap3	2604303	2604304	rs9391774	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	6p21.33	HLA-B	rs9391774-A	0.070171	8E-17		0.03854895	[0.029-0.048] unit decrease	Affymetrix [93095623] (imputed)	N
604	chr6_dbb_hap3	2604410	2604411	rs73728881	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.33		rs73728881-C	0.408	8E-101				Affymetrix [10369434] (imputed)	N
604	chr6_dbb_hap3	2604487	2604488	rs2442730	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	6p21.33	HLA-B	rs2442730-A	0.723193	2E-43		0.03767923	[0.032-0.043] unit decrease	Affymetrix [93095623] (imputed)	N
604	chr6_dbb_hap3	2604552	2604553	rs9266059	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs9266059-C	NR	7E-15		0.0219789	[0.016-0.028] unit decrease	Affymetrix [319769] (imputed)	N
604	chr6_dbb_hap3	2604552	2604553	rs9266059	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs9266059-C	NR	1E-13		0.0210357	[0.015-0.027] unit decrease	Affymetrix [319769] (imputed)	N
604	chr6_dbb_hap3	2604552	2604553	rs9266059	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs9266059-C	NR	3E-12		0.0197526	[0.014-0.025] unit increase	Affymetrix [321016] (imputed)	N
604	chr6_dbb_hap3	2604552	2604553	rs9266059	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-B	rs9266059-C	NR	2E-12		0.0216682	[0.016-0.028] unit increase	Affymetrix [323123] (imputed)	N
604	chr6_dbb_hap3	2604552	2604553	rs9266059	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs9266059-C	NR	3E-12		0.0199124	[0.014-0.026] unit decrease	Affymetrix [321169] (imputed)	N
604	chr6_dbb_hap3	2604719	2604720	rs9266063	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs9266063-A	NR	1E-9		0.017108	[0.012-0.023] unit increase	Affymetrix [321016] (imputed)	N
604	chr6_dbb_hap3	2604725	2604726	rs34429926	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	6p21.33	HLA-C, HLA-B	rs34429926-?	NR	3E-29		0.04099494	[0.034-0.048] unit increase	Illumina [27896057] (imputed)	N
604	chr6_dbb_hap3	2604817	2604818	rs9405083	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-B	rs9405083-T	NR	5E-10		0.0221393	[0.015-0.029] unit decrease	Affymetrix [323123] (imputed)	N
604	chr6_dbb_hap3	2604914	2604915	rs4644106	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs4644106-C	NR	9E-14		0.0259517	[0.019-0.033] unit decrease	Affymetrix [319769] (imputed)	N
604	chr6_dbb_hap3	2604914	2604915	rs4644106	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs4644106-C	NR	9E-14		0.0259699	[0.019-0.033] unit decrease	Affymetrix [319769] (imputed)	N
604	chr6_dbb_hap3	2604914	2604915	rs4644106	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-B	rs4644106-C	NR	5E-10		0.0235741	[0.016-0.031] unit increase	Affymetrix [323123] (imputed)	N
604	chr6_dbb_hap3	2604931	2604932	rs28380929	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pneumonia	7,423 East Asian ancestry cases, 171,303 East Asian ancestry controls	NA	6p21.33		rs28380929-T	0.015924804	5E-22		0.70876914	[0.56-0.85] unit increase	Illumina [13429980] (imputed)	N
604	chr6_dbb_hap3	2605210	2605211	rs9266077	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p21.33	XXbac-BPG248L24.12	rs9266077-G	0.149984	4E-50		0.05959745	[0.052-0.067] unit increase	Affymetrix [93095623] (imputed)	N
604	chr6_dbb_hap3	2605227	2605228	rs2442725	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs2442725-T	NR	5E-8		0.0167286	[0.011-0.023] unit decrease	Affymetrix [319769] (imputed)	N
604	chr6_dbb_hap3	2605227	2605228	rs2442725	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs2442725-T	NR	4E-8		0.0167925	[0.011-0.023] unit decrease	Affymetrix [319769] (imputed)	N
604	chr6_dbb_hap3	2605254	2605255	rs36057735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium HDL	115,082 European ancestry individuals	NA	6p21.33		rs36057735-C	0.80097	9E-14		0.0357792	[0.026-0.045] unit increase	NR [11722792] (imputed)	N
604	chr6_dbb_hap3	2605254	2605255	rs36057735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in HDL	115,082 European ancestry individuals	NA	6p21.33		rs36057735-C	0.80097	8E-14		0.0346386	[0.026-0.044] unit increase	NR [11722792] (imputed)	N
604	chr6_dbb_hap3	2605254	2605255	rs36057735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in HDL	115,082 European ancestry individuals	NA	6p21.33		rs36057735-C	0.80097	2E-13		0.0344232	[0.025-0.044] unit increase	NR [11722792] (imputed)	N
604	chr6_dbb_hap3	2605254	2605255	rs36057735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	6p21.33		rs36057735-C	0.80097	5E-14		0.035387	[0.026-0.045] unit increase	NR [11722792] (imputed)	N
604	chr6_dbb_hap3	2605254	2605255	rs36057735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium HDL particles	115,082 European ancestry individuals	NA	6p21.33		rs36057735-C	0.80097	9E-14		0.0354958	[0.026-0.045] unit increase	NR [11722792] (imputed)	N
604	chr6_dbb_hap3	2605254	2605255	rs36057735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium HDL	115,082 European ancestry individuals	NA	6p21.33		rs36057735-C	0.80097	3E-12		0.0333993	[0.024-0.043] unit increase	NR [11722792] (imputed)	N
604	chr6_dbb_hap3	2605254	2605255	rs36057735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	6p21.33		rs36057735-C	0.80097	9E-13		0.0339999	[0.025-0.043] unit increase	NR [11722792] (imputed)	N
604	chr6_dbb_hap3	2605254	2605255	rs36057735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein A1 levels	115,082 European ancestry individuals	NA	6p21.33		rs36057735-C	0.80097	4E-14		0.0357836	[0.027-0.045] unit increase	NR [11722792] (imputed)	N
604	chr6_dbb_hap3	2605254	2605255	rs36057735	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	6p21.33	HLA-B	rs36057735-C	0.800848	3E-35		0.0304388	[0.026-0.035] unit increase	Affymetrix [NR] (imputed)	N
604	chr6_dbb_hap3	2605254	2605255	rs36057735	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling nervous	373,121 European ancestry individuals	NA	6p21.33	NR	rs36057735-C	0.195566	1E-8		5.69	z score increase	NR [10847151] (imputed)	N
604	chr6_dbb_hap3	2605254	2605255	rs36057735	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.33	C6orf15, CCHCR1, CDSN, HCG22, HCG26, HCG27, HCP5, HLA-B, HLA-C, MICA, MIR6891, POU5F1, PSORS1C1, PSORS1C2, PSORS1C3, TCF19	rs36057735-C		2E-12		1.1	[1.07-1.13]	Affymetrix, Illumina [NR]	N
604	chr6_dbb_hap3	2605640	2605641	rs2507993	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large HDL	115,082 European ancestry individuals	NA	6p21.33		rs2507993-C	0.51967	4E-10		0.0257964	[0.018-0.034] unit increase	NR [11722792] (imputed)	N
604	chr6_dbb_hap3	2605640	2605641	rs2507993	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large HDL	115,082 European ancestry individuals	NA	6p21.33		rs2507993-C	0.51967	2E-9		0.0247775	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
604	chr6_dbb_hap3	2605640	2605641	rs2507993	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large HDL particles	115,082 European ancestry individuals	NA	6p21.33		rs2507993-C	0.51967	9E-10		0.0253075	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
604	chr6_dbb_hap3	2605640	2605641	rs2507993	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	6p21.33		rs2507993-C	0.51967	4E-11		0.0271386	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
604	chr6_dbb_hap3	2605640	2605641	rs2507993	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	6p21.33		rs2507993-C	0.51967	4E-11		0.0272976	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
604	chr6_dbb_hap3	2605840	2605841	rs9266089	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Chickenpox	107,769 European ancestry cases, 15,982 European ancestry controls	NA	6p21.33	HLA-B	rs9266089-G	0.85	1E-10		1.12	[1.1-1.14]	Illumina [at least 560000] (imputed)	N
604	chr6_dbb_hap3	2605869	2605870	rs2442719	26039976	Wei Z	2015-06-17	Sci Rep	Genome-Wide Association Studies of HIV-1 Host Control in Ethnically Diverse Chinese Populations.	HIV-1 viral setpoint	326 Han Chinese ancestry cases, 58 Dai Chinese ancestry cases, 40 Jingpo Chinese ancestry cases, 83 Uygur Chinese ancestry cases, 11 Hui Chinese ancestry cases, 20 East Asian cases	NA	6p21.33	HLA-C, HLA-B	rs2442719-A	0.4161	8E-7	(Han)	0.3298	unit decrease	Illumina [up to 528294]	N
604	chr6_dbb_hap3	2605893	2605894	rs2523616	30850646	Tziotzios C	2019-03-08	Nat Commun	Genome-wide association study in frontal fibrosing alopecia identifies four susceptibility loci including HLA-B*07:02.	Frontal fibrosing alopecia	1,016 European ancestry cases, 4,145 European ancestry controls		6p21.33	HLA-B	rs2523616-T	0.19	8E-119		4.73	[4.15-5.39]	Illumina [~ 8000000] (imputed)	N
604	chr6_dbb_hap3	2605950	2605951	rs117598591	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	20,917 European ancestry cases, 440,906 European ancestry controls, 14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	6p21.33		rs117598591-A	NR	3E-20		0.2416	[0.19-0.29] unit increase	Affymetrix, Illumina [25841367] (imputed)	N
604	chr6_dbb_hap3	2605974	2605975	rs11753309	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Non-albumin protein levels	98,538 Japanese ancestry individuals	NA	6p21.33	HLA-C, HLA-B	rs11753309-?	NR	1E-12		0.07675	[0.056-0.098] unit increase novel	Illumina [6108953] (imputed)	N
604	chr6_dbb_hap3	2605974	2605975	rs11753309	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Albumin-globulin ratio	98,626 Japanese ancestry individuals	NA	6p21.33	HLA-C, HLA-B	rs11753309-?	NR	4E-14		0.08157	[0.06-0.103] unit decrease novel	Illumina [6108953] (imputed)	N
604	chr6_dbb_hap3	2605983	2605984	rs2523614	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Naive CD4-CD8- T cell %T cell	3,427 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs2523614-C	0.26364	6E-9		0.1522	[0.1-0.2] unit decrease	Illumina [18349913] (imputed)	N
604	chr6_dbb_hap3	2605983	2605984	rs2523614	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	6p21.33	HLA-C, MICA	rs2523614-T	0.689	6E-10		0.0237097	[0.016-0.031] unit increase	Illumina [13519193] (imputed)	N
604	chr6_dbb_hap3	2605983	2605984	rs2523614	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.33	HLA-C, MICA	rs2523614-T	0.689	2E-7	(men)	0.0253993	[0.016-0.035] unit increase	Illumina [13520550] (imputed)	N
604	chr6_dbb_hap3	2605991	2605992	rs62396264	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs62396264-G	NR	1E-8		0.042766	[0.028-0.057] unit decrease	Affymetrix [321016] (imputed)	N
604	chr6_dbb_hap3	2606178	2606179	rs35735140	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	6p21.33	XXbac-BPG248L24.12	rs35735140-C	0.0632	9E-33		0.08825474	[0.074-0.103] unit increase	Affymetrix [~ 2500000] (imputed)	N
604	chr6_dbb_hap3	2606200	2606200	rs35506574	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs35506574-CTGA	NR	6E-13		0.0203427	[0.015-0.026] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_dbb_hap3	2606200	2606200	rs35506574	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-B	rs35506574-CTGA	NR	6E-10		0.0194754	[0.013-0.026] unit increase	Affymetrix [323858] (imputed)	N
604	chr6_dbb_hap3	2606200	2606200	rs35506574	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs35506574-CTGA	NR	2E-12		0.0198288	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_dbb_hap3	2606200	2606200	rs35506574	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HLA-B	rs35506574-CTGA	NR	6E-9		0.0183276	[0.012-0.024] unit increase	Affymetrix [127266] (imputed)	N
604	chr6_dbb_hap3	2606200	2606200	rs35506574	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs35506574-CTGA	NR	2E-15		0.0226739	[0.017-0.028] unit increase	Affymetrix [321169] (imputed)	N
605	chr6_dbb_hap3	2723701	2723702	rs2244839	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCP5	rs2244839-A	NR	8E-12		0.0228771	[0.016-0.029] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_dbb_hap3	2723723	2723724	rs2596449	26151496	Chen PL	2015-07-07	Nat Commun	Genetic determinants of antithyroid drug-induced agranulocytosis by human leukocyte antigen genotyping and genome-wide association study.	Thionamide-induced agranulocytosis in Graves' disease	21 East Asian ancestry cases with agranulocytosis, 662 East Asian ancestry cases without agranulocytosis	21 East Asian ancestry cases with agranulocytosis, 546 East Asian ancestry cases without agranulocytosis	6p21.33	HLA	rs2596449-A	0.047	2E-13	(trend)	6.35	[3.68-10.96] (allelic)	Affymetrix [522980]	N
605	chr6_dbb_hap3	2724992	2724993	rs9688839	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MICB	5,365 Icelandic ancestry individuals	NA	6p21.33		rs9688839-G	0.06745	2E-66		0.633901	[0.56-0.71] unit increase	Illumina [7506463] (imputed)	N
605	chr6_dbb_hap3	2725179	2725180	rs3094603	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	6p21.33		rs3094603-G	0.704515	7E-9		0.0251235	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
605	chr6_dbb_hap3	2725347	2725348	rs14597	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	6p21.33	NR	rs14597-A	0.433533	3E-9		0.0405708	[0.027-0.054] unit increase	Affymetrix [17914406] (imputed)	N
605	chr6_dbb_hap3	2725415	2725416	rs1055569	25897833	Thompson AG	2015-04-21	Transl Psychiatry	Genome-wide association study of behavioural and psychiatric features in human prion disease.	Psychotic symptoms and prion disease	Up to 170 cases, 5,200 controls	NA	6p21.33	HCG26	rs1055569-?	0.291	3E-6		2.36	[1.66-3.35]	Illumina [518938]	N
605	chr6_dbb_hap3	2725642	2725643	rs2523659	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large HDL	115,082 European ancestry individuals	NA	6p21.33		rs2523659-T	0.698051	3E-11		0.0290837	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
605	chr6_dbb_hap3	2725642	2725643	rs2523659	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCP5	rs2523659-G	NR	4E-8		0.0169129	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_dbb_hap3	2725984	2725985	rs3828889	30833571	Wiberg A	2019-03-04	Nat Commun	A genome-wide association analysis identifies 16 novel susceptibility loci for carpal tunnel syndrome.	Carpal tunnel syndrome	12,312 European ancestry cases, 389,344 European ancestry controls	NA	6p21.33	Intergenic	rs3828889-C	0.732	2E-8		1.09	[1.06-1.12]	Affymetrix [84000000] (imputed)	N
605	chr6_dbb_hap3	2726002	2726003	rs3828890	22797727	Okada Y	2012-07-15	Nat Genet	Meta-analysis identifies multiple loci associated with kidney function-related traits in east Asian populations.	Renal function-related traits (sCR)	42,257 East Asian, South Asian, and South East Asian ancestry individuals	19,662 East Asian ancestry individuals	6p21.33	MHC	rs3828890-G	0.11	3E-9		0.0069	[0.0046-0.0092] mg/dl increase	Affymetrix, Illumina [2353587] (imputed)	N
605	chr6_dbb_hap3	2726002	2726003	rs3828890	22797727	Okada Y	2012-07-15	Nat Genet	Meta-analysis identifies multiple loci associated with kidney function-related traits in east Asian populations.	Renal function-related traits (eGRFcrea)	42,451 East Asian, South Asian, and South East Asian ancestry individuals	19,636 East Asian ancestry individuals	6p21.33	MHC	rs3828890-G	0.11	1E-9		0.0079	[0.0054-0.0105] ml/min/1.73m2 decrease	Affymetrix, Illumina [2353587] (imputed)	N
605	chr6_dbb_hap3	2726302	2726302	rs9281492	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.33	HCP5	rs9281492-A	0.7482	1E-6		0.041	[0.024-0.058] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
605	chr6_dbb_hap3	2726682	2726683	rs4413654	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCP5	rs4413654-A	NR	2E-9		0.0202622	[0.014-0.027] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_dbb_hap3	2727016	2727017	rs145038238	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Treatment or medication use - levothyroxine sodium (UKB data field 20003_1141191044)	18,688 European ancestry cases, 437,588 European ancestry controls	NA	6p21.33		rs145038238-A	0.003929	1E-9		0.54	[0.36-0.72] unit increase	NR [11842647] (imputed)	N
605	chr6_dbb_hap3	2728064	2728065	rs2844503	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCP5	rs2844503-A	NR	2E-11		0.0191544	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_dbb_hap3	2728064	2728065	rs2844503	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HCP5	rs2844503-A	NR	6E-11		0.0185817	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_dbb_hap3	2728064	2728065	rs2844503	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCP5	rs2844503-A	NR	2E-11		0.0189754	[0.013-0.025] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_dbb_hap3	2728064	2728065	rs2844503	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCP5	rs2844503-A	NR	4E-10		0.0193246	[0.013-0.025] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_dbb_hap3	2728064	2728065	rs2844503	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HCP5	rs2844503-A	NR	3E-10		0.018057	[0.012-0.024] unit increase	Affymetrix [321169] (imputed)	N
605	chr6_dbb_hap3	2728115	2728116	rs3131643	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Creatinine levels	110,051 European ancestry individuals	NA	6p21.33		rs3131643-G	0.840442	8E-10		0.0296468	[0.02-0.039] unit decrease	NR [11722792] (imputed)	N
605	chr6_dbb_hap3	2728115	2728116	rs3131643	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.33		rs3131643-G	0.84	2E-102				Affymetrix [10369434] (imputed)	N
605	chr6_dbb_hap3	2728115	2728116	rs3131643	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p21.33	HCP5	rs3131643-A	0.158883	4E-12		0.027895512	[0.02-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
605	chr6_dbb_hap3	2728115	2728116	rs3131643	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.33	HCP5	rs3131643-A	0.15885	1E-15		0.04733108	[0.036-0.059] unit decrease	Affymetrix [93095623] (imputed)	N
605	chr6_dbb_hap3	2728115	2728116	rs3131643	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count (basophil)	171,846 European ancestry individuals	NA	6p21.33	HCP5	rs3131643-A	0.1597	2E-24		0.04853096	[0.039-0.058] unit decrease	Affymetrix [~ 2500000] (imputed)	N
605	chr6_dbb_hap3	2728115	2728116	rs3131643	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	6p21.33	HCP5	rs3131643-A	0.1597	4E-107		0.1077558	[0.098-0.117] unit decrease	Affymetrix [~ 2500000] (imputed)	N
605	chr6_dbb_hap3	2728245	2728246	rs79501286	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Chickenpox	107,769 European ancestry cases, 15,982 European ancestry controls	NA	6p21.33	NR	rs79501286-?	NR	2E-9		0.13	[0.088-0.172] unit increase	Illumina [at least 560000] (imputed)	N
605	chr6_dbb_hap3	2729937	2729938	rs2523655	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	150,545 East Asian ancestry individuals	NA	6p21.33		rs2523655-G	0.870322	1E-8		0.0292114	[0.019-0.039] unit decrease	Illumina [13478866] (imputed)	N
605	chr6_dbb_hap3	2730847	2730848	rs2523653	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Angina pectoris	14,007 East Asian ancestry cases, 145,158 East Asian ancestry controls	NA	6p21.33		rs2523653-G	0.805782921	3E-12		0.12027492	[0.087-0.154] unit decrease	Illumina [13426705] (imputed)	N
605	chr6_dbb_hap3	2730897	2730898	rs17206973	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p21.33	NR	rs17206973-?	NR	2E-22		0.2134	[0.17-0.26] unit decrease	Illumina [at least 560000] (imputed)	N
605	chr6_dbb_hap3	2731799	2731800	rs2248372	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCP5	rs2248372-A	NR	4E-8		0.0185638	[0.012-0.025] unit increase	Affymetrix [323858] (imputed)	N
605	chr6_dbb_hap3	2731799	2731800	rs2248372	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	HCP5	rs2248372-A	0.3318273	1E-19	(MHC class I polypeptide-related sequence B)	0.4168	[0.33-0.5] unit increase	Affymetrix [509946]	N
605	chr6_dbb_hap3	2732129	2732130	rs2248462	22286212	Urayama KY	2012-01-27	J Natl Cancer Inst	Genome-wide association study of classical Hodgkin lymphoma and Epstein-Barr virus status-defined subgroups.	Hodgkin's lymphoma	1,200 European ancestry cases, 6,417 European ancestry controls	563 European ancestry cases, 613 European ancestry controls	6p21.33	MICB	rs2248462-?	NR	7E-16	(Total cHL)	1.64	[1.45-1.85]	Illumina [502514]	N
605	chr6_dbb_hap3	2732921	2732922	rs2516513	32376702	Shen J	2020-05-06	mSphere	Genetic Association Reveals Protection against Recurrence of Clostridium difficile Infection with Bezlotoxumab Treatment.	Recurrence of Clostridium difficile infection x bezlotuxumab treatment interaction (2df test)	704 European, African American and Asian ancestry individuals	NA	6p21.33	NR	rs2516513-T	0.41	3E-8				Affymetrix [7570264] (imputed)	N
605	chr6_dbb_hap3	2733985	2733986	rs116518228	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCP5	rs116518228-T	NR	2E-8		0.032993	[0.022-0.044] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_dbb_hap3	2734195	2734196	rs3749946	24837172	Juyal G	2014-05-16	Gut	Genome-wide association scan in north Indians reveals three novel HLA-independent risk loci for ulcerative colitis.	Ulcerative colitis	603 North Indian ancestry cases, 622 North Indian ancestry controls	733 North Indian ancestry cases, 1,148 North Indian ancestry controls	6p21.33	3.8-1, HCG26	rs3749946-A	0.07	2E-15		1.97	[1.66-2.33]	Illumina [480391]	N
605	chr6_dbb_hap3	2734309	2734310	rs3099844	22399527	Kristiansson K	2012-03-07	Circ Cardiovasc Genet	Genome-wide screen for metabolic syndrome susceptibility Loci reveals strong lipid gene contribution but no evidence for common genetic basis for clustering of metabolic syndrome traits.	Metabolic syndrome	2,637 European ancestry cases, 7,927 European ancestry controls	NA	6p21.33	HCG26, MICB	rs3099844-A	0.08	2E-8	(HDL)	0.15	[NR] mmol/l decrease	Illumina [1257079] (imputed)	N
605	chr6_dbb_hap3	2734309	2734310	rs3099844	20662065	Clancy RM	2010-07-26	Arthritis Rheum	Identification of candidate loci at 6p21 and 21q22 in a genome-wide association study of cardiac manifestations of neonatal lupus.	Neonatal lupus	116 European ancestry cases, 3,351 European ancestry controls	NA	6p21.33	NFKBIL1, LTA, AIF1, TNF, LTB	rs3099844-?	0.11	5E-10		3.34	[2.29-4.89]	Illumina [346110]	N
605	chr6_dbb_hap3	2734355	2734356	rs2523650	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	6p21.33	HCG26, MICB, HCP5, MCCD1, ATP6V1G2-DDX39B, DDX39B, SNORD117, SNORD84, DDX39B-AS1, ATP6V1G2, NFKBIL1, MICA, LTA, TNF, LTB, LST1, NCR3, HLA-B, AIF1, PRRC2A, SNORA38, MIR6832, BAG6, APOM, C6orf47, GPANK1, CSNK2B, LY6G5B, LY6G5C, ABHD16A, MIR4646, LY6G6F, LY6G6E, LY6G6D, LY6G6C, C6orf25, DDAH2	rs2523650-?		5E-7	(recessive)	0.167	[0.1-0.23] unit decrease	Illumina [1492601] (imputed)	N
605	chr6_dbb_hap3	2734355	2734356	rs2523650	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	6p21.33	HCG26, MICB, HCP5, MCCD1, ATP6V1G2-DDX39B, DDX39B, SNORD117, SNORD84, DDX39B-AS1, ATP6V1G2, NFKBIL1, MICA, LTA, TNF, LTB, LST1, NCR3, HLA-B, AIF1, PRRC2A, SNORA38, MIR6832, BAG6, APOM, C6orf47, GPANK1, CSNK2B, LY6G5B, LY6G5C, ABHD16A, MIR4646, LY6G6F, LY6G6E, LY6G6D, LY6G6C, C6orf25, DDAH2	rs2523650-?		3E-6	(additive)	0.121	[0.07-0.172] unit decrease	Illumina [1492601] (imputed)	N
605	chr6_dbb_hap3	2734355	2734356	rs2523650	31189108	O'Connor D	2019-06-01	Cell Rep	Common Genetic Variations Associated with the Persistence of Immunity following Childhood Immunization.	Tetanus toxoid IgG concentrations post childhood immunization	549 European ancestry children and adolescents	1,303 European ancestry children and adolescents	6p21.33	NR	rs2523650-?	NR	1E-9		0.1117	[0.076-0.147] unit increase	Illumina [~ 6700000] (imputed)	N
605	chr6_dbb_hap3	2734953	2734954	rs2516420	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	6p21.33	MHC	rs2516420-C	0.9263	1E-7		1.1	[1.06-1.13]	Affymetrix, Illumina [16900397] (imputed)	N
605	chr6_dbb_hap3	2734975	2734976	rs2523648	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCP5	rs2523648-A	NR	4E-8		0.0208118	[0.013-0.028] unit increase	Affymetrix [323858] (imputed)	N
605	chr6_dbb_hap3	2734975	2734976	rs2523648	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HCP5	rs2523648-A	NR	5E-8		0.0207421	[0.013-0.028] unit increase	Affymetrix [127266] (imputed)	N
605	chr6_dbb_hap3	2736049	2736050	rs2905752	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	6p21.33	Intergenic	rs2905752-G	NR	2E-7		0.0193848	[0.012-0.027] unit decrease	Illumina [13519193] (imputed)	N
605	chr6_dbb_hap3	2736243	2736244	rs2523710	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	Intergenic	rs2523710-A	0.2052314	6E-15	(EA, MHC class I polypeptide-related sequence A)	0.4247	[0.32-0.53] unit decrease	Affymetrix [509946]	N
605	chr6_dbb_hap3	2737181	2737182	rs2904602	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCP5	rs2904602-A	NR	1E-9		0.0273048	[0.019-0.036] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_dbb_hap3	2737373	2737374	rs143439747	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs143439747-A	0.049	9E-14	(Natural cytotoxicity triggering receptor 3, NCR3.3003.29.2)	0.42	[0.3-0.54] unit decrease	Affymetrix [10572788] (imputed)	N
605	chr6_dbb_hap3	2737373	2737374	rs143439747	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mumps	31,227 European ancestry cases, 54,153 European ancestry controls	NA	6p21.33	NR	rs143439747-?	NR	4E-6		0.1204	[0.069-0.171] unit increase	Illumina [at least 560000] (imputed)	N
605	chr6_dbb_hap3	2737437	2737438	rs28525417	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCP5	rs28525417-G	NR	3E-8		0.0185461	[0.012-0.025] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_dbb_hap3	2737437	2737438	rs28525417	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HCP5	rs28525417-G	NR	4E-8		0.0171664	[0.011-0.023] unit increase	Affymetrix [321169] (imputed)	N
605	chr6_dbb_hap3	2737626	2737627	rs2905741	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (underestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	6p21.33	NR	rs2905741-?	NR	1E-8		5.689	NR z score increase	Illumina [at least 830937] (imputed)	N
605	chr6_dbb_hap3	2737744	2737748	rs144801046	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls, 20,367 East Asian ancestry cases, 158,359 East Asian ancestry controls	NA	6p21.33		rs144801046-C	NR	2E-13		0.1571	[0.12-0.2] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
605	chr6_dbb_hap3	2737744	2737748	rs144801046	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (beta blocking agents)	20,367 East Asian ancestry cases, 158,359 East Asian ancestry controls	NA	6p21.33		rs144801046-C	0.072674614	2E-13		0.15705363	[0.12-0.2] unit increase	Illumina [13134967] (imputed)	N
605	chr6_dbb_hap3	2737766	2737767	rs2904789	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.33	NR	rs2904789-?	NR	5E-11				Affymetrix [~ 8270000] (imputed)	N
605	chr6_dbb_hap3	2738624	2738625	rs2905736	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MICB	5,365 Icelandic ancestry individuals	NA	6p21.33		rs2905736-A	0.0328	1E-193		1.45308	[1.36-1.55] unit increase	Illumina [7506463] (imputed)	N
605	chr6_dbb_hap3	2738624	2738625	rs2905736	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	MICB, LST1, HCP5, XXbac-BPG181B23.6, XXbac-BPG16N22.5, DDX39B, ATP6V1G2, TNF, NCR3, PRRC2A, CSNK2B, GPANK1, LY6G5B, CLIC1, MSH5, VARS, Y_RNA, PPIAP9, RPL15P4, MCCD1, SNORD117, ATP6V1G2-DDX39B, AL662801.1, DDX39B-AS1, SNORD84, NFKBIL1, LTB, LTA, SNORA38, BAG6, CSNK2B-LY6G5B--991, C6orf47-AS1, C6orf47, MSH5-SAPCD1	rs2905736-A	0.03109328	2E-27	(EA, MHC class I polypeptide-related sequence B)	1.367	[1.13-1.61] unit increase	Affymetrix [509946]	N
605	chr6_dbb_hap3	2738881	2738882	rs2428501	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.33	Intergenic	rs2428501-G	NR	1E-6	(men)	0.0231006	[0.014-0.032] unit decrease	Illumina [13520550] (imputed)	N
605	chr6_dbb_hap3	2739696	2739697	rs144596166	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MICB	rs144596166-G	NR	4E-8		0.0340564	[0.022-0.046] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_dbb_hap3	2740859	2740860	rs9267235	31235810	Fung K	2019-06-24	Sci Rep	Genome-wide association study identifies loci for arterial stiffness index in 127,121 UK Biobank participants.	Arterial stiffness index	127,121 European ancestry individuals	NA	6p21.33	MICB	rs9267235-T	0.954	7E-6		0.044	[0.024-0.064] unit increase	Affymetrix [~ 10446505] (imputed)	N
605	chr6_dbb_hap3	2741521	2741522	rs28664826	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs28664826-A	0.396	1E-46	(MHC class I polypeptide-related sequence B, MICB.5102.55.3)	0.38	[0.32-0.44] unit decrease	Affymetrix [10572788] (imputed)	N
605	chr6_dbb_hap3	2741675	2741676	rs9267257	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p21.33	NR	rs9267257-?	NR	2E-9		0.0961	[0.065-0.127] unit decrease	Illumina [at least 560000] (imputed)	N
605	chr6_dbb_hap3	2742897	2742898	rs150971914	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MICB	rs150971914-T	NR	2E-15		0.0653082	[0.049-0.081] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_dbb_hap3	2742897	2742898	rs150971914	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MICB	rs150971914-T	NR	7E-9		0.0517554	[0.034-0.069] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_dbb_hap3	2744399	2744400	rs2016572	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	6p21.33	NR	rs2016572-G	0.331938	6E-12		0.0260936	[0.019-0.033] unit increase	Affymetrix [16577313] (imputed)	N
605	chr6_dbb_hap3	2744758	2744759	rs12192123	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol use disorder	57,564 European ancestry cases, 256,395 European ancestry controls	NA	6p21.33	NR	rs12192123-A	0.2321	2E-8		5.593	[NR] unit decrease	Affymetrix [7003540] (imputed)	N
605	chr6_dbb_hap3	2745387	2745388	rs2904783	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p21.33	NR	rs2904783-C	0.402	9E-6	(IFNalpha_STAT1_of_CD4p_T)			Illumina [5084123] (imputed)	N
605	chr6_dbb_hap3	2746458	2746459	rs12195665	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MICB	rs12195665-A	NR	3E-10		0.0197044	[0.014-0.026] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_dbb_hap3	2746458	2746459	rs12195665	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	MICB	rs12195665-A	NR	4E-10		0.0195546	[0.013-0.026] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_dbb_hap3	2746458	2746459	rs12195665	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	MICB	rs12195665-A	NR	2E-12		0.0223504	[0.016-0.029] unit increase	Affymetrix [321169] (imputed)	N
605	chr6_dbb_hap3	2746468	2746469	rs12202667	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MICB	rs12202667-C	NR	4E-8		0.018764	[0.012-0.025] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_dbb_hap3	2746547	2746548	rs2904597	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MICB	rs2904597-G	NR	3E-10		0.0229697	[0.016-0.03] unit increase	Affymetrix [323858] (imputed)	N
605	chr6_dbb_hap3	2746547	2746548	rs2904597	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	MICB	rs2904597-G	NR	4E-10		0.0228883	[0.016-0.03] unit increase	Affymetrix [127266] (imputed)	N
605	chr6_dbb_hap3	2746547	2746548	rs2904597	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.33	MICB	rs2904597-G	NR	4E-11		0.0218802	[0.015-0.028] unit increase	Affymetrix [321114] (imputed)	N
605	chr6_dbb_hap3	2746787	2746788	rs2507971	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	6p21.33	MICB	rs2507971-A	0.382584	8E-17		0.022113472	[0.017-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
605	chr6_dbb_hap3	2746787	2746788	rs2507971	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	6p21.33	MICB	rs2507971-T	0.6165	3E-49		0.05419588	[0.047-0.061] unit decrease	Affymetrix [~ 2500000] (imputed)	N
605	chr6_dbb_hap3	2746907	2746908	rs9267325	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	MICB	rs9267325-C	NR	2E-8		0.0226374	[0.015-0.031] unit increase	Affymetrix [321169] (imputed)	N
605	chr6_dbb_hap3	2746973	2746974	rs3094006	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	6p21.33	MICB	rs3094006-C	0.726	1E-12		0.02938566	[0.021-0.037] unit decrease	Affymetrix [~ 2500000] (imputed)	N
605	chr6_dbb_hap3	2747126	2747127	rs2395040	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs2395040-A	0.535	6E-23				Affymetrix [10369434] (imputed)	N
605	chr6_dbb_hap3	2747126	2747127	rs2395040	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	6p21.33	NR	rs2395040-?	NR	9E-7				Illumina [at least 7383741] (imputed)	N
605	chr6_dbb_hap3	2747371	2747372	rs113239947	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	MICB	rs113239947-T	NR	5E-10		0.0206455	[0.014-0.027] unit increase	Affymetrix [321169] (imputed)	N
605	chr6_dbb_hap3	2747739	2747740	rs2516411	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MICB	5,339 Icelandic ancestry individuals	NA	6p21.33		rs2516411-A	0.1051	9E-72		0.494444	[0.44-0.55] unit increase	Illumina [7506463] (imputed)	N
605	chr6_dbb_hap3	2748024	2748024	rs10661543	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MICB	rs10661543-CAAAA	NR	7E-9		0.0186799	[0.012-0.025] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_dbb_hap3	2748024	2748024	rs10661543	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MICB	rs10661543-CAAAA	NR	2E-9		0.0215387	[0.015-0.029] unit increase	Affymetrix [323858] (imputed)	N
605	chr6_dbb_hap3	2748024	2748024	rs10661543	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	MICB	rs10661543-CAAAA	NR	1E-8		0.0183279	[0.012-0.025] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_dbb_hap3	2748024	2748024	rs10661543	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	MICB	rs10661543-CAAAA	NR	2E-8		0.0201129	[0.013-0.027] unit increase	Affymetrix [127266] (imputed)	N
605	chr6_dbb_hap3	2748024	2748024	rs10661543	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MICB	rs10661543-CAAAA	NR	4E-8		0.017737	[0.011-0.024] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_dbb_hap3	2748162	2748162	rs557297301	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	MICB	rs557297301-CGAGGA	NR	4E-8		0.0173075	[0.011-0.023] unit increase	Affymetrix [321169] (imputed)	N
605	chr6_dbb_hap3	2748349	2748350	rs2534681	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MICB	rs2534681-A	NR	6E-11		0.0184043	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_dbb_hap3	2748349	2748350	rs2534681	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	MICB	rs2534681-A	NR	1E-10		0.0181502	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_dbb_hap3	2748349	2748350	rs2534681	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	MICB	rs2534681-A	NR	1E-11		0.0192736	[0.014-0.025] unit increase	Affymetrix [321169] (imputed)	N
605	chr6_dbb_hap3	2748349	2748350	rs2534681	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	6p21.33	Intergenic	rs2534681-A	0.4679	1E-10	(MTAG)	0.0106	[0.0073-0.0139] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
605	chr6_dbb_hap3	2748798	2748799	rs72844762	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.33		rs72844762-G	0.967	3E-22				Affymetrix [10369434] (imputed)	N
605	chr6_dbb_hap3	2748798	2748799	rs72844762	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	6p21.33	MICB	rs72844762-A	0.034026	3E-11		0.042991024	[0.03-0.056] unit increase	Affymetrix [93095623] (imputed)	N
605	chr6_dbb_hap3	2748909	2748910	rs2516408	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	MICB	rs2516408-A	NR	1E-10		0.0219255	[0.015-0.029] unit decrease	Affymetrix [127266] (imputed)	N
605	chr6_dbb_hap3	2750462	2750463	rs3094005	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	HLA-B, MICB, DDX39B, HCG22, HLA-C, XXbac-BPG248L24.12, ZDHHC20P2, MICA, HCP5, SNORD84, LTB, LTA, LST1, NCR3, HCG27, XXbac-BPG299F13.14, XXbac-BPG299F13.15, XXbac-BPG299F13.16, MIR6891, DHFRP2, RNU6-283P, AL671883.1, FGFR3P1, HLA-S, XXbac-BPG181B23.7, LINC01149, XXbac-BPG181B23.6, Y_RNA, XXbac-BPG16N22.5, PPIAP9, DDX39B-AS1, SNORD117, ATP6V1G2-DDX39B, AL662801.1, ATP6V1G2, NFKBIL1, TNF	rs3094005-T	0.09437751	4E-38	(MHC class I polypeptide-related sequence B)	0.9308	[0.8-1.07] unit decrease	Affymetrix [509946]	N
605	chr6_dbb_hap3	2750518	2750519	rs2534674	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	MICB, Y_RNA	rs2534674-T	0.3517588	7E-16	(EA, MHC class I polypeptide-related sequence B)	0.3579	[0.27-0.44] unit increase	Affymetrix [509946]	N
605	chr6_dbb_hap3	2751472	2751473	rs3828919	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	6p21.33	MICB	rs3828919-A	0.044243	9E-12		0.038664818	[0.028-0.05] unit increase	Affymetrix [93095623] (imputed)	N
605	chr6_dbb_hap3	2751632	2751633	rs41293864	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Strep throat	52,487 European ancestry cases, 22,017 European ancestry controls	NA	6p21.33	NR	rs41293864-?	NR	2E-8		0.0446	[0.029-0.06] unit increase	Illumina [at least 560000] (imputed)	N
605	chr6_dbb_hap3	2751858	2751859	rs9267374	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MICB	rs9267374-C	NR	1E-11		0.0224498	[0.016-0.029] unit decrease	Affymetrix [323123] (imputed)	N
606	chr6_dbb_hap3	2753571	2753572	rs9378160	30940813	Kranzler HR	2019-04-02	Nat Commun	Genome-wide association study of alcohol consumption and use disorder in 274,424 individuals from multiple populations.	Alcohol use disorder	34,658 European American cases, 167,346 European American controls, 17,267 African American cases, 39,381 African American controls, 3,449 Latino American cases, 10,726 Latino American controls, 164 East Asian American cases, 1,210 East Asian American controls, 46 South Asian American cases, 144 South Asian American controls	NA	6p21.33	MICB	rs9378160-C	0.719	2E-8	(Latino)	1.1890606	[1.13-1.25]	Affymetrix [up to 12500000] (imputed)	N
606	chr6_dbb_hap3	2753790	2753791	rs188935761	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 142,336 Japanese ancestry controls	NA	6p21.33	MICB	rs188935761-?	NR	5E-6		0.613998	[0.35-0.88] unit increase	Illumina [19707525] (imputed)	N
606	chr6_dbb_hap3	2755170	2755171	rs2534664	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MICB	rs2534664-A	NR	2E-13		0.0226003	[0.017-0.029] unit decrease	Affymetrix [323123] (imputed)	N
606	chr6_dbb_hap3	2757390	2757391	rs2855811	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.33	NR	rs2855811-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
606	chr6_dbb_hap3	2758315	2758316	rs2855812	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.33	NR	rs2855812-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
606	chr6_dbb_hap3	2758315	2758316	rs2855812	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma and major depressive disorder	46,802 European ancestry asthma cases, 59,851 European ancestry major depressive disorder cases, 460,635 European ancestry controls	NA	6p21.33	AIF1, APOM, ATP6V1G2, BAG6, C6orf15, C6orf25, C6orf47, C6orf48, CDSN, CLIC1, CSNK2B, DDAH2, DDX39B, HCG26, HCG27, HCP5, HLA-B, HSPA1A, HSPA1B, HSPA1L, LSM2, LST1, LTA, LTB, LY6G5B, LY6G5C, LY6G6C, LY6G6D, LY6G6E, LY6G6F, MCCD1, MICA, MICB, MIR4646, MIR6832, MIR6891, MSH5, MSH5-SAPCD1, NCR3, NEU1, NFKBIL1, POU5F1, PRRC2A, PSORS1C1, PSORS1C2, PSORS1C3, SAPCD1, SLC44A4, SNORA38, SNORD48, SNORD52, SNORD84, SNORD117, TCF19, TNF, VARS, VWA7, HLA-C, CCHCR1, GPANK1, ABHD16A	rs2855812-?	NR	2E-16				Affymetrix [up to 13554551] (imputed)	N
606	chr6_dbb_hap3	2758315	2758316	rs2855812	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma (childhood onset)	9,676 European ancestry cases, 347,481 European ancestry controls	NA	6p21.33	ABHD16A, AIF1, APOM, ATP6V1G2, ATP6V1G2-DDX39B, BAG6, C6orf15, C6orf25, C6orf47, C6orf48, CCHCR1, CDSN, CLIC1, CSNK2B, DDAH2, DDX39B, GPANK1, HCG26, HCG27, HCP5, HLA-B, HLA-C, HSPA1A, HSPA1B, HSPA1L, LSM2, LST1, LTA, LTB, LY6G5B, LY6G5C, LY6G6C, LY6G6D, LY6G6E, LY6G6F, MCCD1, MICA, MICB, MIR4646, MIR6832, MIR6891, MSH5, MSH5-SAPCD1, NCR3, NEU1, NFKBIL1, POU5F1, PRRC2A, PSORS1C1, PSORS1C2, PSORS1C3, SAPCD1, SLC44A4, SNORA38, SNORD48, SNORD52, SNORD84, SNORD117, TCF19, TNF, VARS, VWA7	rs2855812-?	NR	4E-7		0.118096	[0.071-0.165] unit decrease	Affymetrix [8274727] (imputed)	N
606	chr6_dbb_hap3	2758315	2758316	rs2855812	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs2855812-G	0.7990625	8E-9	(PDIA5, 5593_11_3)	0.1749456	[0.12-0.23] unit decrease	Illumina [> 1000000] (imputed)	N
606	chr6_dbb_hap3	2758315	2758316	rs2855812	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs2855812-G	0.7990625	8E-14	(C4A C4B, 4481_34_2)	0.23044567	[0.17-0.29] unit increase	Illumina [> 1000000] (imputed)	N
606	chr6_dbb_hap3	2758315	2758316	rs2855812	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs2855812-G	0.7990625	7E-11	(C2, 3186_2_2)	0.20260093	[0.14-0.26] unit decrease	Illumina [> 1000000] (imputed)	N
606	chr6_dbb_hap3	2758315	2758316	rs2855812	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs2855812-G	0.7990625	5E-9	(PILRA, 8683_119_3)	0.17610262	[0.12-0.24] unit decrease	Illumina [> 1000000] (imputed)	N
606	chr6_dbb_hap3	2758315	2758316	rs2855812	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs2855812-G	0.7990625	3E-25	(ISG15, 14148_2_3)	0.31585807	[0.26-0.37] unit decrease	Illumina [> 1000000] (imputed)	N
606	chr6_dbb_hap3	2758315	2758316	rs2855812	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs2855812-G	0.7990625	2E-9	(RACGAP1, 13587_10_3)	0.18150227	[0.12-0.24] unit decrease	Illumina [> 1000000] (imputed)	N
606	chr6_dbb_hap3	2758315	2758316	rs2855812	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs2855812-G	0.7990625	2E-25	(MICB, 9328_55_3)	0.31198063	[0.25-0.37] unit increase	Illumina [> 1000000] (imputed)	N
606	chr6_dbb_hap3	2758315	2758316	rs2855812	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs2855812-G	0.7990625	2E-19	(FTMT, 8048_9_3)	0.27116117	[0.21-0.33] unit increase	Illumina [> 1000000] (imputed)	N
606	chr6_dbb_hap3	2758315	2758316	rs2855812	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs2855812-G	0.7990625	2E-126	(MICB, 5102_55_3)	0.69572484	[0.64-0.75] unit increase	Illumina [> 1000000] (imputed)	N
606	chr6_dbb_hap3	2758315	2758316	rs2855812	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs2855812-G	0.7990625	1E-10	(CREB3L4, 11308_8_3)	0.18975821	[0.13-0.25] unit decrease	Illumina [> 1000000] (imputed)	N
606	chr6_dbb_hap3	2758315	2758316	rs2855812	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls, 2,149 African ancestry cases, 6,055 African ancestry controls, 1,239 Japanese ancestry cases, 3,976 Japanese ancestry controls, 606 Latino cases, 792 Latino controls	NA	6p21.33	MICB, HCP5, MCCD1	rs2855812-T	0.23	9E-12		1.1	[1.07-1.13]	Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
606	chr6_dbb_hap3	2758315	2758316	rs2855812	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls	NA	6p21.33	MICB, MICA, MCCD1	rs2855812-T	0.23	3E-10		0.09	[0.07-0.11] unit increase	Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
606	chr6_dbb_hap3	2758315	2758316	rs2855812	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p21.33	NR	rs2855812-?	NR	1E-16		0.213	[0.16-0.26] unit increase	Illumina [at least 560000] (imputed)	N
606	chr6_dbb_hap3	2758315	2758316	rs2855812	28235828	Traglia M	2017-04-03	G3 (Bethesda)	Independent Maternal and Fetal Genetic Effects on Midgestational Circulating Levels of Environmental Pollutants.	Midgestational circulating levels of PBDEs	329 Hispanic mothers, 273 European ancestry mothers, 122 Asian ancestry mothers, 23 South Asian ancestry mothers, 21 African American mothers, 22 other ancestry mothers	NA	6p21.33	MICB	rs2855812-?		8E-7	(BDE-47)	0.33	[0.19-0.47] unit decrease	Affymetrix [629686]	N
606	chr6_dbb_hap3	2758315	2758316	rs2855812	28235828	Traglia M	2017-04-03	G3 (Bethesda)	Independent Maternal and Fetal Genetic Effects on Midgestational Circulating Levels of Environmental Pollutants.	Midgestational circulating levels of PBDEs	329 Hispanic mothers, 273 European ancestry mothers, 122 Asian ancestry mothers, 23 South Asian ancestry mothers, 21 African American mothers, 22 other ancestry mothers	NA	6p21.33	MICB	rs2855812-?		3E-7	(BDE-100)	0.35	[0.21-0.49] unit decrease	Affymetrix [629686]	N
606	chr6_dbb_hap3	2758315	2758316	rs2855812	28235828	Traglia M	2017-04-03	G3 (Bethesda)	Independent Maternal and Fetal Genetic Effects on Midgestational Circulating Levels of Environmental Pollutants.	Midgestational circulating levels of PBDEs	329 Hispanic mothers, 273 European ancestry mothers, 122 Asian ancestry mothers, 23 South Asian ancestry mothers, 21 African American mothers, 22 other ancestry mothers	NA	6p21.33	MICB	rs2855812-?		2E-6	(Sum PBDE)	0.29	[0.17-0.41] unit decrease	Affymetrix [629686]	N
606	chr6_dbb_hap3	2758315	2758316	rs2855812	21946350	Soler Artigas M	2011-09-25	Nat Genet	Genome-wide association and large-scale follow up identifies 16 new loci influencing lung function.	Pulmonary function	48,201 European ancestry individuals	46,411 European ancestry individuals	6p21.33	MICB	rs2855812-T	NR	2E-7	(FEV1)	0.03	[0.018-0.042] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
606	chr6_dbb_hap3	2759552	2759553	rs3134900	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MICB	5,365 Icelandic ancestry individuals	NA	6p21.33		rs3134900-G	0.08239	7E-220		1.01394	[0.95-1.08] unit decrease	Illumina [7506463] (imputed)	N
606	chr6_dbb_hap3	2759552	2759553	rs3134900	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	MICB	rs3134900-G	0.14	3E-101	(MHC class I polypeptide-related sequence B, MICB.5102.55.3)	0.71	[0.65-0.77] unit decrease	Affymetrix [10572788] (imputed)	N
606	chr6_dbb_hap3	2760415	2760416	rs41293883	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Eczema	7,884 European ancestry cases, 239,773 European ancestry controls	21,000 cases, 96,000 controls	6p21.33	HLA-DQB1	rs41293883-?	0.95847	2E-14		1.4541224	[1.33-1.6]	Affymetrix [15688218] (imputed)	N
606	chr6_dbb_hap3	2760651	2760652	rs41273040	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	6p21.33	MICB	rs41273040-G	0.976386	4E-18		0.0571663	[0.044-0.07] unit decrease	Affymetrix [NR] (imputed)	N
606	chr6_dbb_hap3	2760651	2760652	rs41273040	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.33	NR	rs41273040-?	NR	6E-9				Affymetrix [~ 8270000] (imputed)	N
606	chr6_dbb_hap3	2760722	2760723	rs3131638	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	6p21.33	NR	rs3131638-G	0.7739	8E-10		1.0449321	[1.03-1.06]	Affymetrix, Illumina [NR] (imputed)	N
606	chr6_dbb_hap3	2761081	2761082	rs3132468	22001756	Khor CC	2011-10-16	Nat Genet	Genome-wide association study identifies susceptibility loci for dengue shock syndrome at MICB and PLCE1.	Dengue shock syndrome	2,008 Vietnamese ancestry child cases, 2,018 Vietnamese ancestry child controls	1,737 Vietnamese ancestry child cases, 2,934 Vietnamese ancestry child controls	6p21.33	MICB	rs3132468-?	0.13	4E-11		1.34	[1.23-1.46]	Illumina [481342]	N
606	chr6_dbb_hap3	2761250	2761251	rs9380260	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MICB	rs9380260-A	NR	1E-12		0.0271773	[0.02-0.035] unit decrease	Affymetrix [323123] (imputed)	N
606	chr6_dbb_hap3	2761892	2761893	rs62395355	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.33		rs62395355-C	0.821	9E-12				Affymetrix [10369434] (imputed)	N
606	chr6_dbb_hap3	2761892	2761893	rs62395355	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MICB	rs62395355-A	NR	4E-12		0.0253688	[0.018-0.033] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_dbb_hap3	2761892	2761893	rs62395355	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	MICB	rs62395355-A	NR	8E-12		0.0250776	[0.018-0.032] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_dbb_hap3	2761892	2761893	rs62395355	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	MICB	rs62395355-A	NR	3E-10		0.0233476	[0.016-0.031] unit increase	Affymetrix [321169] (imputed)	N
606	chr6_dbb_hap3	2762053	2762054	rs3130614	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	6p21.33	NR	rs3130614-A	0.119161214504899	1E-11		0.013812465	[0.0098-0.0178] unit decrease	NR [NR]	N
606	chr6_dbb_hap3	2762053	2762054	rs3130614	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	6p21.33	NR	rs3130614-A	0.119161214504899	9E-11		0.017454144	[0.012-0.023] unit decrease	NR [NR]	N
606	chr6_dbb_hap3	2762053	2762054	rs3130614	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	6p21.33	NR	rs3130614-A	0.119161214504899	1E-10		0.014875911	[0.01-0.019] unit decrease	NR [NR]	N
606	chr6_dbb_hap3	2762053	2762054	rs3130614	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	6p21.33	NR	rs3130614-A	0.119161214504899	1E-11		0.011892368	[0.0085-0.0153] unit decrease	NR [NR]	N
606	chr6_dbb_hap3	2762053	2762054	rs3130614	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	6p21.33	MICB	rs3130614-T	NR	3E-10		0.19759	[0.14-0.26] unit increase	Illumina [at least 950000] (imputed)	N
606	chr6_dbb_hap3	2762053	2762054	rs3130614	26291516	Miller FW	2015-08-20	Genes Immun	Genome-wide association study identifies HLA 8.1 ancestral haplotype alleles as major genetic risk factors for myositis phenotypes.	Myositis	1,710 European ancestry cases, 4,724 European ancestry controls	NA	6p21.33	MICB	rs3130614-A	NR	4E-48		2.31	[NR]	Illumina [NR] (imputed)	N
606	chr6_dbb_hap3	2762449	2762450	rs2844498	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MICB	rs2844498-T	NR	7E-13		0.0226459	[0.016-0.029] unit increase	Affymetrix [323858] (imputed)	N
606	chr6_dbb_hap3	2762449	2762450	rs2844498	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	MICB	rs2844498-T	NR	8E-12		0.0215973	[0.015-0.028] unit increase	Affymetrix [127266] (imputed)	N
606	chr6_dbb_hap3	2764544	2764545	rs9267431	33692975	Buda P	2021-02-22	Front Pediatr	Association Between rs12037447, rs146732504, rs151078858, rs55723436, and rs6094136 Polymorphisms and Kawasaki Disease in the Population of Polish Children.	Kawasaki disease	119 European ancestry cases, 6,071 European ancestry controls	NA	6p21.33	MICB	rs9267431-A	0.1194	2E-6		2.113	1.547-2.886	Illumina [164395]	N
606	chr6_dbb_hap3	2764579	2764580	rs2246618	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MICB	rs2246618-T	NR	2E-11		0.0226591	[0.016-0.029] unit decrease	Affymetrix [323858] (imputed)	N
606	chr6_dbb_hap3	2764579	2764580	rs2246618	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume (adjusted for hypertension)	46,055 European ancestry individuals, 2,469 African American individuals	NA	6p21.33	MICB	rs2246618-C	0.3118	7E-6		0.0286	[0.016-0.041] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
606	chr6_dbb_hap3	2764579	2764580	rs2246618	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume (adjusted for hypertension)	46,055 European ancestry individuals	NA	6p21.33	MICB	rs2246618-C	0.3118	4E-6		0.029	[0.017-0.041] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
606	chr6_dbb_hap3	2764579	2764580	rs2246618	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	48,454 European ancestry individuals	NA	6p21.33	MICB	rs2246618-C	0.3118	7E-7		0.0307	[0.019-0.043] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
606	chr6_dbb_hap3	2764579	2764580	rs2246618	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	2,516 African American individuals, 48,454 European ancestry individuals	NA	6p21.33	MICB	rs2246618-C	0.3118	2E-6		0.03	[0.018-0.042] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
606	chr6_dbb_hap3	2765238	2765239	rs3132463	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MICB	rs3132463-T	NR	5E-9		0.0213533	[0.014-0.028] unit increase	Affymetrix [323123] (imputed)	N
606	chr6_dbb_hap3	2766261	2766262	rs3132461	28806749	Leo PJ	2017-08-14	PLoS Genet	Defining the genetic susceptibility to cervical neoplasia-A genome-wide association study.	Cervical cancer	2,866 European ancestry cases, 6,481 European ancestry controls	NA	6p21.33	MICB, MCCD1	rs3132461-G	NR	2E-13		1.358	[NR]	Illumina [10863230] (imputed)	N
606	chr6_dbb_hap3	2766685	2766686	rs3132459	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MICB	rs3132459-C	NR	4E-8		0.0179194	[0.012-0.024] unit increase	Affymetrix [321016] (imputed)	N
606	chr6_dbb_hap3	2766863	2766863	rs5875324	30787463	Escala-Garcia M	2019-02-21	Br J Cancer	Genome-wide association study of germline variants and breast cancer-specific mortality.	Breast cancer specific mortality in breast cancer	7,697 European ancestry cases, 88,964 European ancestry controls	NA	6p21.33	NR	rs5875324-?	NR	2E-6		0.8744475	[0.83-0.92]	Affymetrix, Illumina [~ 10400000] (imputed)	N
606	chr6_dbb_hap3	2766892	2766893	rs2516399	21738478	Okada Y	2011-06-30	PLoS Genet	Identification of nine novel loci associated with white blood cell subtypes in a Japanese population.	White blood cell types	8,794 Japanese ancestry individuals	5,998 Japanese ancestry individuals	6p21.33	MHC	rs2516399-A	0.81	2E-12	(eosinophil count)	0.105	[0.08-0.14] unit increase	Illumina [2178645] (imputed)	N
606	chr6_dbb_hap3	2768728	2768729	rs2844495	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG16N22.5	rs2844495-G	NR	2E-18		0.0261655	[0.02-0.032] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_dbb_hap3	2768728	2768729	rs2844495	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG16N22.5	rs2844495-G	NR	2E-18		0.0261197	[0.02-0.032] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_dbb_hap3	2768728	2768729	rs2844495	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG16N22.5	rs2844495-G	NR	1E-10		0.0210221	[0.015-0.027] unit decrease	Affymetrix [323123] (imputed)	N
606	chr6_dbb_hap3	2768728	2768729	rs2844495	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG16N22.5	rs2844495-G	NR	3E-16		0.024738	[0.019-0.031] unit increase	Affymetrix [321169] (imputed)	N
606	chr6_dbb_hap3	2768798	2768799	rs62397979	31320639	Hillary RF	2019-07-18	Nat Commun	Genome and epigenome wide studies of neurological protein biomarkers in the Lothian Birth Cohort 1936.	Neurological blood protein biomarker levels	750 European ancestry individuals	NA	6p21.33	XXbac-BPG16N22.5	rs62397979-G	0.0469	1E-26	(Alpha-2-MRAP)	1.36939	[1.12-1.62] unit increase	Illumina [8683751] (imputed)	N
606	chr6_dbb_hap3	2769292	2769293	rs17200698	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	Y_RNA, MICB, PPIAP9, XXbac-BPG16N22.5, RPL15P4, MCCD1, ATP6V1G2, ATP6V1G2-DDX39B, NFKBIL1, LST1, NCR3	rs17200698-T	0.0361809	1E-11	(EA, MHC class I polypeptide-related sequence A)	0.813	[0.58-1.04] unit increase	Affymetrix [509946]	N
606	chr6_dbb_hap3	2770109	2770110	rs2395045	28031287	Sasayama D	2016-11-26	Hum Mol Genet	Genome-wide quantitative trait loci mapping of the human cerebrospinal fluid proteome.	Cerebrospinal fluid biomarker levels	133 Japanese ancestry individuals.	NA	6p21.33	NR	rs2395045-?	NR	6E-9	(MHC class I polypeptide-related sequence B)			Illumina [514227]	N
606	chr6_dbb_hap3	2770275	2770276	rs3131631	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cervical cancer	6,563 European ancestry cases, 410,350 European ancestry controls	NA	6p21.33		rs3131631-G	NR	5E-10		1.1332	NR	Affymetrix [7846216] (imputed)	N
606	chr6_dbb_hap3	2770698	2770699	rs2516491	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG16N22.5	rs2516491-C	NR	1E-8		0.0197328	[0.013-0.027] unit decrease	Affymetrix [323858] (imputed)	N
606	chr6_dbb_hap3	2770951	2770952	rs3131630	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG16N22.5	rs3131630-G	NR	1E-9		0.0197999	[0.013-0.026] unit decrease	Affymetrix [319769] (imputed)	N
606	chr6_dbb_hap3	2770951	2770952	rs3131630	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG16N22.5	rs3131630-G	NR	3E-9		0.019409	[0.013-0.026] unit decrease	Affymetrix [319769] (imputed)	N
606	chr6_dbb_hap3	2772001	2772002	rs149066340	30111768	Yao C	2018-08-15	Nat Commun	Genome-wide mapping of plasma protein QTLs identifies putatively causal genes and pathways for cardiovascular disease.	Blood protein levels	6861 European ancestry individuals	4298 European ancestry individuals	6p21.33		rs149066340-C	0.979	1E-36	(C2)	0.92	unit increase	Affymetrix, Illumina [8509364] (imputed)	N
606	chr6_dbb_hap3	2773050	2773051	rs34451538	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs34451538-G	0.971	6E-20				Affymetrix [10369434] (imputed)	N
606	chr6_dbb_hap3	2773050	2773051	rs34451538	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.33	PPIAP9	rs34451538-A	0.028767	2E-9		0.044486254	[0.03-0.059] unit decrease	Affymetrix [93095623] (imputed)	N
606	chr6_dbb_hap3	2773550	2773551	rs3132455	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large HDL	115,082 European ancestry individuals	NA	6p21.33		rs3132455-G	0.653225	3E-10		0.0260764	[0.018-0.034] unit increase	NR [11722792] (imputed)	N
606	chr6_dbb_hap3	2775241	2775242	rs3132454	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PPIAP9	rs3132454-G	NR	2E-8		0.0168062	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_dbb_hap3	2775241	2775242	rs3132454	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PPIAP9	rs3132454-G	NR	4E-12		0.0205728	[0.015-0.026] unit decrease	Affymetrix [321016] (imputed)	N
606	chr6_dbb_hap3	2775241	2775242	rs3132454	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	PPIAP9	rs3132454-G	NR	2E-8		0.0183183	[0.012-0.025] unit decrease	Affymetrix [323123] (imputed)	N
606	chr6_dbb_hap3	2776728	2776729	rs3093992	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	PPIAP9	rs3093992-C	NR	3E-8		0.0191109	[0.012-0.026] unit increase	Affymetrix [323123] (imputed)	N
606	chr6_dbb_hap3	2777613	2777614	rs114060326	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)(bidirectional)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.33		rs114060326-G	NR	3E-10				Affymetrix [7846216] (imputed)	N
606	chr6_dbb_hap3	2778050	2778051	rs3093988	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	RPL15P4	rs3093988-A	NR	8E-12		0.0266126	[0.019-0.034] unit increase	Affymetrix [323123] (imputed)	N
606	chr6_dbb_hap3	2778050	2778051	rs3093988	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	316,772 European ancestry male individuals	NA	6p21.33	NR	rs3093988-A	0.1856	8E-20		0.0203	[0.016-0.025] unit decrease	NR [~ 27400000] (imputed)	N
606	chr6_dbb_hap3	2781203	2781204	rs2734580	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	RPL15P4	rs2734580-T	NR	8E-16		0.0360498	[0.027-0.045] unit decrease	Affymetrix [323123] (imputed)	N
606	chr6_dbb_hap3	2782149	2782150	rs2516482	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.33	MCCD1	rs2516482-G	0.195446	1E-15		0.038059197	[0.029-0.047] unit increase	Affymetrix [93095623] (imputed)	N
606	chr6_dbb_hap3	2782505	2782506	rs3093983	33649182	Penova M	2021-03-01	Proc Natl Acad Sci U S A	Genome wide association study of HTLV-1-associated myelopathy/tropical spastic paraparesis in the Japanese population.	HTLV-1 associated myelopathy	731 Japanese ancestry cases, 846 Japanese ancestry controls	NA	6p21.33		rs3093983-G	0.08	4E-7		1.86	[1.47-2.37]	Illumina [126394]	N
606	chr6_dbb_hap3	2785182	2785183	rs3853601	22197932	Paternoster L	2011-12-25	Nat Genet	Meta-analysis of genome-wide association studies identifies three new risk loci for atopic dermatitis.	Atopic dermatitis	5,606 European ancestry cases, 20,565 European ancestry controls	5,419 European ancestry cases, 19,833 European ancestry controls	6p21.33	BAT1	rs3853601-G	0.12	2E-6		1.13	[1.08-1.19]	Affymetrix, Illumina [~ 2500000] (imputed)	N
606	chr6_dbb_hap3	2789773	2789774	rs114751021	33841421	Li J	2021-03-25	Front Immunol	Variants at the MHC Region Associate With Susceptibility to <i>Clostridioides difficile</i> Infection: A Genome-Wide Association Study Using Comprehensive Electronic Health Records.	Clostridioides difficle infection in antibiotics-users	587 European ancestry cases, 3,166 European ancestry controls	NA	6p21.33	SNORD117	rs114751021-G	0.024	5E-8		2.41	[1.84-3.09]	Illumina [64973696] (imputed)	N
606	chr6_dbb_hap3	2791059	2791060	rs2734583	21912425	Tohkin M	2011-09-13	Pharmacogenomics J	A whole-genome association study of major determinants for allopurinol-related Stevens-Johnson syndrome and toxic epidermal necrolysis in Japanese patients.	Stevens-Johnson syndrome and toxic epidermal necrolysis (SJS-TEN)	14 Japanese ancestry cases, 991 Japanese ancestry controls	NA	6p21.33	PSORS1C1, PSORS1C3, BAT1, HLA-C, MICC, PPIAP9, POLR2LP, CCHCR1, TCF19, HLA-B*5801, HCP5, POU5F1	rs2734583-?	0.0055	2E-8		66.8	[19.8-225.0]	Illumina [890321]	N
606	chr6_dbb_hap3	2791369	2791370	rs9267485	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	6p21.33	DDX39B	rs9267485-G	NR	2E-17		0.0531442	[0.041-0.065] unit decrease	Illumina [13520550] (imputed)	N
606	chr6_dbb_hap3	2792270	2792271	rs2071596	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	6p21.33	DDX39B	rs2071596-A	0.163229	1E-42		0.04289182	[0.037-0.049] unit increase	Affymetrix [93095623] (imputed)	N
606	chr6_dbb_hap3	2792270	2792271	rs2071596	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6p21.33	DDX39B	rs2071596-A	0.163228	9E-50		0.046432465	[0.04-0.053] unit increase	Affymetrix [93095623] (imputed)	N
606	chr6_dbb_hap3	2792270	2792271	rs2071596	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6p21.33	DDX39B	rs2071596-A	0.163185	2E-27		0.03458288	[0.028-0.041] unit decrease	Affymetrix [93095623] (imputed)	N
606	chr6_dbb_hap3	2792270	2792271	rs2071596	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6p21.33	DDX39B	rs2071596-A	0.163195	5E-24		0.030947343	[0.025-0.037] unit increase	Affymetrix [93095623] (imputed)	N
606	chr6_dbb_hap3	2793515	2793516	rs2269476	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	6p21.33	DDX39B, ATP6V1G2-DDX39B	rs2269476-A	0.179	2E-24		0.04806173	[0.039-0.057] unit increase	Affymetrix [~ 2500000] (imputed)	N
606	chr6_dbb_hap3	2794030	2794031	rs34788230	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	6p21.33	DDX39B	rs34788230-G	0.6263	4E-13		0.02679379	[0.02-0.034] unit decrease	Affymetrix [~ 2500000] (imputed)	N
606	chr6_dbb_hap3	2796501	2796502	rs2844509	35023831	Chong M	2022-01-13	Elife	GWAS and ExWAS of blood Mitochondrial DNA copy number identifies 71 loci and highlights a potential causal role in dementia.	Mitochondrial DNA copy number	395,718 British, Irish, Other White, South Asian, African ancestry individuals	NA	6p21.33	NR	rs2844509-G	0.242812	3E-8		0.014	[0.0091-0.0189] unit increase	Affymetrix [23037915] (imputed)	N
606	chr6_dbb_hap3	2798979	2798980	rs2239705	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	6p21.33	NR	rs2239705-?		8E-9	(MICA)			Illumina [NR]	N
606	chr6_dbb_hap3	2799820	2799821	rs9267488	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p21.33	NR	rs9267488-?	NR	3E-6		4.68	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
606	chr6_dbb_hap3	2799820	2799821	rs9267488	26291516	Miller FW	2015-08-20	Genes Immun	Genome-wide association study identifies HLA 8.1 ancestral haplotype alleles as major genetic risk factors for myositis phenotypes.	Myositis	1,710 European ancestry cases, 4,724 European ancestry controls	NA	6p21.33	ATP6V1G2, DDX39B	rs9267488-G	NR	6E-49		2.32	[NR]	Illumina [NR] (imputed)	N
606	chr6_dbb_hap3	2800021	2800022	rs34568880	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	6p21.33	ATP6V1G2	rs34568880-C	0.986687	6E-10		0.0562557	[0.038-0.074] unit decrease	Affymetrix [NR] (imputed)	N
606	chr6_dbb_hap3	2801335	2801336	rs2239708	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	6p21.33	ATP6V1G2, NFKBIL1	rs2239708-T	0.033249	2E-12		0.04410994	[0.032-0.056] unit increase	Affymetrix [93095623] (imputed)	N
606	chr6_dbb_hap3	2801371	2801372	rs2071591	26562150	Seldin MF	2015-10-10	Mol Med	Genome-wide Association Study of Late-Onset Myasthenia Gravis: Confirmation of TNFRSF11A, and Identification of ZBTB10 and Three Distinct HLA Associations.	Late-onset myasthenia gravis	532 European ancestry cases, 2,128 European ancestry controls	NA	6p21.33	MHC_Class III	rs2071591-?	NR	4E-12				Illumina [6175472] (imputed)	N
606	chr6_dbb_hap3	2803475	2803476	rs2523501	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (multivariate analysis)	477,968 European ancestry individuals	NA	6p21.33	NFKBIL1	rs2523501-C	0.152	8E-10		0.036	[0.024-0.048] unit decrease	NR [NR] (imputed)	N
606	chr6_dbb_hap3	2805225	2805226	rs2516383	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	NFKBIL1	rs2516383-C	NR	3E-9		0.0206882	[0.014-0.027] unit increase	Affymetrix [323123] (imputed)	N
606	chr6_dbb_hap3	2805993	2805994	rs6916921	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	LST1, NCR3, ATP6V1G2, TNF, NFKBIL1, LTA, LTB	rs6916921-T	0.1330321	2E-23	(Natural cytotoxicity triggering receptor 3)	0.6188	[0.5-0.74] unit decrease	Affymetrix [509946]	N
606	chr6_dbb_hap3	2806224	2806225	rs34492353	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.33	NR	rs34492353-?	NR	1E-13				Affymetrix [~ 8270000] (imputed)	N
606	chr6_dbb_hap3	2806224	2806225	rs34492353	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.33	NR	rs34492353-?	NR	6E-12				Affymetrix [~ 8270000] (imputed)	N
606	chr6_dbb_hap3	2807162	2807163	rs34268928	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	6p21.33	NFKBIL1	rs34268928-T	0.02077	2E-9		0.04651516	[0.031-0.062] unit decrease	Affymetrix [93095623] (imputed)	N
606	chr6_dbb_hap3	2808235	2808236	rs6929796	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	6p21.33	NFKBIL1	rs6929796-A	0.172	3E-8		0.0092	[0.0059-0.0125] unit decrease	Affymetrix, Illumina [33811881] (imputed)	N
606	chr6_dbb_hap3	2808235	2808236	rs6929796	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	6p21.33	NFKBIL1	rs6929796-A	0.163327	3E-33		0.036523763	[0.031-0.042] unit increase	Affymetrix [93095623] (imputed)	N
606	chr6_dbb_hap3	2808235	2808236	rs6929796	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6p21.33	NFKBIL1	rs6929796-A	0.163358	2E-18		0.030205907	[0.023-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
606	chr6_dbb_hap3	2808235	2808236	rs6929796	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	6p21.33	NFKBIL1	rs6929796-A	0.1634	8E-16		0.03895272	[0.029-0.048] unit increase	Affymetrix [~ 2500000] (imputed)	N
606	chr6_dbb_hap3	2808235	2808236	rs6929796	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	6p21.33	NFKBIL1	rs6929796-A	0.1635	5E-17		0.04056459	[0.031-0.05] unit increase	Affymetrix [~ 2500000] (imputed)	N
606	chr6_dbb_hap3	2808235	2808236	rs6929796	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	6p21.33	NFKBIL1	rs6929796-A	0.1635	7E-11		0.03154443	[0.022-0.041] unit increase	Affymetrix [~ 2500000] (imputed)	N
606	chr6_dbb_hap3	2808235	2808236	rs6929796	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	6p21.33	NFKBIL1	rs6929796-A	0.1635	7E-12		0.03316401	[0.024-0.043] unit increase	Affymetrix [~ 2500000] (imputed)	N
606	chr6_dbb_hap3	2809236	2809237	rs35597084	32592749	Butler-Laporte G	2020-06-24	Clin Microbiol Infect	Elevated body-mass index is associated with an increased risk of infectious disease admissions and mortality: a mendelian randomization study.	Sepsis (90-day mortality)	341 European ancestry cases, 1,696 European ancestry controls	NA	6p21.33	NFKBIL1	rs35597084-C	0.96	4E-8		0.17	[0.11-0.23] unit decrease	NR [NR]	N
606	chr6_dbb_hap3	2810416	2810417	rs2857605	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	6p21.33	NFKBIL1	rs2857605-C	0.21061104132454	6E-14		0.0672	[0.05-0.085] unit decrease	NR [5035015] (imputed)	N
606	chr6_dbb_hap3	2811012	2811013	rs2230365	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.33		rs2230365-C	0.859	7E-16				Affymetrix [10369434] (imputed)	N
606	chr6_dbb_hap3	2811012	2811013	rs2230365	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	NFKBIL1	rs2230365-T	NR	1E-12		0.0288606	[0.021-0.037] unit decrease	Affymetrix [321016] (imputed)	N
606	chr6_dbb_hap3	2811012	2811013	rs2230365	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	NFKBIL1	rs2230365-T	NR	1E-11		0.0299572	[0.021-0.039] unit decrease	Affymetrix [323123] (imputed)	N
606	chr6_dbb_hap3	2811012	2811013	rs2230365	26414677	Day FR	2015-11-01	Nat Genet	Large-scale genomic analyses link reproductive aging to hypothalamic signaling, breast cancer susceptibility and BRCA1-mediated DNA repair.	Menopause (age at onset)	up to 69,626 European ancestry women	NA	6p21.33	MSH5, HLA	rs2230365-C	0.84	8E-10		0.17	[0.11-0.23] years decrease	Affymetrix, Illumina [~ 2600000] (imputed)	N
606	chr6_dbb_hap3	2813694	2813695	rs4947324	33235445	Lee YJ	2020-11-17	Int J Chron Obstruct Pulmon Dis	A Genome-Wide Association Study in Early COPD: Identification of One Major Susceptibility Loci.	Early chronic obstructive pulmonary disease in never smokers	38 Korean ancestry cases, 1,778 Korean ancestry controls	NA	6p21.33	NFKBIL1	rs4947324-?	NR	8E-6	(PS matching analysis)	4.16	NR	Affymetrix [345072]	N
606	chr6_dbb_hap3	2814898	2814899	rs2516392	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.33		rs2516392-G	0.6215470000000001	7E-47		1.0639546	[1.05-1.08]	Affymetrix, Illumina [9851866] (imputed)	N
606	chr6_dbb_hap3	2816235	2816236	rs138885312	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs138885312-?		2E-8		1.8	[1.47-2.20]	Illumina [7645193] (imputed)	N
606	chr6_dbb_hap3	2816372	2816373	rs28732143	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs28732143-A	0.041	1E-64	(MHC class I polypeptide-related sequence B, MICB.5102.55.3)	1.02	[0.9-1.14] unit increase	Affymetrix [10572788] (imputed)	N
606	chr6_dbb_hap3	2818374	2818375	rs2857709	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	NFKBIL1	rs2857709-A	NR	5E-10		0.0243153	[0.017-0.032] unit decrease	Affymetrix [319769] (imputed)	N
606	chr6_dbb_hap3	2818374	2818375	rs2857709	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	NFKBIL1	rs2857709-A	NR	1E-9		0.0236953	[0.016-0.031] unit decrease	Affymetrix [319769] (imputed)	N
606	chr6_dbb_hap3	2818938	2818939	rs2857602	33106546	Johnson TA	2020-10-26	J Hum Genet	Association of an IGHV3-66 gene variant with Kawasaki disease.	Kawasaki disease	1,276 East Asian ancestry cases, 5,086 East Asian ancestry controls	2,152 East Asian ancestry cases, 2,751 East Asian ancestry controls	6p21.33	LTA	rs2857602-A	NR	3E-15		0.78	[0.73-0.83]	Affymetrix, Illumina [6265045] (imputed)	N
606	chr6_dbb_hap3	2818938	2818939	rs2857602	32805626	Yuan S	2020-08-14	EBioMedicine	Effects of tumour necrosis factor on cardiovascular disease and cancer: A two-sample Mendelian randomization study.	Tumor necrosis factor levels	30,912 European ancestry individuals	NA	6p21.33	LTA	rs2857602-G	0.38	3E-12		0.032	[0.02-0.044] unit increase	NR [NR]	N
606	chr6_dbb_hap3	2820691	2820692	rs190775951	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs190775951-A	0.017	8E-16	(MHC class I polypeptide-related sequence B, MICB.5102.55.3)	0.86	[0.64-1.08] unit increase	Affymetrix [10572788] (imputed)	N
606	chr6_dbb_hap3	2823816	2823817	rs3093539	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	6p21.33	ABHD16A, AIF1, APOM, ATP6V1G2, ATP6V1G2-DDX39B, BAG6, C2, C4A, C4B, C4B_2, C6orf25, C6orf47, C6orf48, CFB, CLIC1, CSNK2B, CYP21A1P, CYP21A2, DDAH2, DDX39B, DXO, EHMT2, GPANK1, HSPA1A, HSPA1B, HSPA1L, LOC102060414, LSM2, LST1, LTA, LTB, LY6G5B, LY6G5C, LY6G6C, LY6G6D, LY6G6E, LY6G6F, MCCD1, MICB, MIR1236, MIR4646, MIR6832, MSH5, MSH5-SAPCD1, NCR3, NELFE, NEU1, NFKBIL1, PRRC2A, SAPCD1, SKIV2L, SLC44A4, SNORA38, SNORD48, SNORD52, SNORD84, SNORD117, STK19, TNF, TNXA, TNXB, VARS, VWA7, ZBTB12	rs3093539-G	0.9841	1E-9		1.189845	[1.14-1.24]	Affymetrix [8274727] (imputed)	N
606	chr6_dbb_hap3	2824035	2824037	rs736160	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	LTA	rs736160-A	NR	1E-13		0.0220518	[0.016-0.028] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_dbb_hap3	2824035	2824037	rs736160	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	LTA	rs736160-A	NR	1E-12		0.0211835	[0.015-0.027] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_dbb_hap3	2824035	2824037	rs736160	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	LTA	rs736160-A	NR	7E-14		0.0222905	[0.016-0.028] unit decrease	Affymetrix [321016] (imputed)	N
606	chr6_dbb_hap3	2824035	2824037	rs736160	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	LTA	rs736160-A	NR	1E-21		0.0310209	[0.025-0.037] unit decrease	Affymetrix [323123] (imputed)	N
606	chr6_dbb_hap3	2824035	2824037	rs736160	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	LTA	rs736160-A	NR	3E-11		0.0199683	[0.014-0.026] unit increase	Affymetrix [321169] (imputed)	N
606	chr6_dbb_hap3	2825305	2825306	rs2844482	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	6p21.33	ABHD16A, AIF1, APOM, ATP6V1G2, ATP6V1G2-DDX39B, BAG6, C6orf25, C6orf47, CSNK2B, DDAH2, DDX39B, GPANK1, LST1, LTA, LTB, LY6G5B, LY6G5C, LY6G6C, LY6G6D, LY6G6E, LY6G6F, MCCD1, MICB, MIR4646, MIR6832, NCR3, NFKBIL1, PRRC2A, SNORA38, SNORD84, SNORD117, TNF	rs2844482-T	0.152664	1E-9		1.0639137	[1.04-1.08]	Affymetrix [8274727] (imputed)	N
606	chr6_dbb_hap3	2825305	2825306	rs2844482	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Perceived unattractiveness to mosquitoes	16,576 European ancestry individuals	NA	6p21.33	intergenic	rs2844482-T	NR	8E-6		0.145906	[0.082-0.21] unit decrease	Illumina [7433384] (imputed)	N
606	chr6_dbb_hap3	2825306	2825307	rs2071590	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	6p21.33	NR	rs2071590-A	0.363817	4E-9		0.042927716	[0.029-0.057] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
606	chr6_dbb_hap3	2825306	2825307	rs2071590	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	6p21.33	Intergenic	rs2071590-A	0.378	1E-8		0.0133	[0.0088-0.0178] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
606	chr6_dbb_hap3	2825679	2825680	rs2239704	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	6p21.33	LTA	rs2239704-A	0.385621	2E-12		0.01774556	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
606	chr6_dbb_hap3	2825679	2825680	rs2239704	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	6p21.33	NR	rs2239704-A	0.384392	1E-14		0.0163675	[0.012-0.021] unit decrease	NR [NR]	N
606	chr6_dbb_hap3	2825679	2825680	rs2239704	28806749	Leo PJ	2017-08-14	PLoS Genet	Defining the genetic susceptibility to cervical neoplasia-A genome-wide association study.	Cervical cancer	2,866 European ancestry cases, 6,481 European ancestry controls	NA	6p21.33	TNF	rs2239704-A	NR	6E-9		1.23	[NR]	Illumina [10863230] (imputed)	N
606	chr6_dbb_hap3	2826096	2826097	rs2229094	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.33		rs2229094-T	0.746	4E-60				Affymetrix [10369434] (imputed)	N
606	chr6_dbb_hap3	2826096	2826097	rs2229094	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	6p21.33		rs2229094-T	0.746	9E-34				Affymetrix [10369434] (imputed)	N
606	chr6_dbb_hap3	2826096	2826097	rs2229094	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.33		rs2229094-T	0.746	3E-36				Affymetrix [10369434] (imputed)	N
606	chr6_dbb_hap3	2826096	2826097	rs2229094	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	6p21.33		rs2229094-T	0.746	2E-47				Affymetrix [10369434] (imputed)	N
606	chr6_dbb_hap3	2826096	2826097	rs2229094	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs2229094-T	0.746	6E-107				Affymetrix [10369434] (imputed)	N
606	chr6_dbb_hap3	2826096	2826097	rs2229094	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p21.33		rs2229094-T	0.746	4E-37				Affymetrix [10369434] (imputed)	N
606	chr6_dbb_hap3	2826096	2826097	rs2229094	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	6p21.33	LTA	rs2229094-C	0.254265	6E-29		0.029798461	[0.025-0.035] unit increase	Affymetrix [93095623] (imputed)	N
606	chr6_dbb_hap3	2826096	2826097	rs2229094	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.33	LTA	rs2229094-C	0.254251	7E-45		0.040826518	[0.035-0.047] unit increase	Affymetrix [93095623] (imputed)	N
606	chr6_dbb_hap3	2826096	2826097	rs2229094	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.33	NR	rs2229094-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
606	chr6_dbb_hap3	2826096	2826097	rs2229094	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	White blood cell count	8,825 African American individuals, 18,251 Hispanic/Latino individuals, 543 Asian ancestry individuals, 606 Native American ancestry individuals, 383 individuals	NA	6p21.33	NR	rs2229094-?	NR	4E-6		0.01256537	[0.0072-0.0179] unit increase	Illumina [30613845] (imputed)	N
606	chr6_dbb_hap3	2826096	2826097	rs2229094	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	6p21.33	LTA	rs2229094-C	0.2537	8E-43		0.0564668	[0.048-0.065] unit increase	Affymetrix [~ 2500000] (imputed)	N
606	chr6_dbb_hap3	2826096	2826097	rs2229094	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	6p21.33	LTA	rs2229094-C	0.2536	4E-15		0.03213321	[0.024-0.04] unit increase	Affymetrix [~ 2500000] (imputed)	N
606	chr6_dbb_hap3	2826096	2826097	rs2229094	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	6p21.33	LTA	rs2229094-C	0.2535	6E-72		0.07418746	[0.066-0.082] unit increase	Affymetrix [~ 2500000] (imputed)	N
606	chr6_dbb_hap3	2826297	2826298	rs2229092	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	LTA	rs2229092-C	NR	5E-9		0.0338477	[0.022-0.045] unit decrease	Affymetrix [321016] (imputed)	N
606	chr6_dbb_hap3	2826297	2826298	rs2229092	32641083	Hillary RF	2020-07-08	Genome Med	Multi-method genome- and epigenome-wide studies of inflammatory protein levels in healthy older adults.	Tumor necrosis factor beta levels	982 Scottish ancestry individuals	NA	6p21.33	NR	rs2229092-C	0.05477	5E-31		1.15038	[0.96-1.35] unit decrease	Illumina [7903493] (imputed)	N
606	chr6_dbb_hap3	2826497	2826498	rs4647195	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.33	NR	rs4647195-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
606	chr6_dbb_hap3	2827848	2827849	rs1799964	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	89,266 East Asian ancestry individuals	NA	6p21.33	NR	rs1799964-T	0.827369	7E-15		0.048854	[0.037-0.061] SD units decrease	Affymetrix, Illumina [16289068] (imputed)	N
606	chr6_dbb_hap3	2827848	2827849	rs1799964	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.33	NR	rs1799964-?	NR	1E-11				Affymetrix [~ 8270000] (imputed)	N
606	chr6_dbb_hap3	2827848	2827849	rs1799964	21102463	Franke A	2010-11-21	Nat Genet	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry trios	6p21.33	HLA-DQA2, LTA, TNF, LST1, LTB	rs1799964-C	0.209	4E-11		1.19	[1.13-1.25]	Affymetrix, Illumina [953241] (imputed)	N
606	chr6_dbb_hap3	2828571	2828572	rs1800629	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	TNF	rs1800629-A	NR	3E-12		0.0274188	[0.02-0.035] unit decrease	Affymetrix [323858] (imputed)	N
606	chr6_dbb_hap3	2828571	2828572	rs1800629	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	6p21.33	TNF	rs1800629-A	0.166	8E-19		0.2902	[0.23-0.35] mmHg increase	Affymetrix [NR] (imputed)	N
606	chr6_dbb_hap3	2829367	2829368	rs1800610	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NCR3	5,364 Icelandic ancestry individuals	NA	6p21.33		rs1800610-A	0.05852	5E-49		0.548141	[0.48-0.62] unit decrease	Illumina [7506463] (imputed)	N
606	chr6_dbb_hap3	2829729	2829730	rs3093662	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	6p21.33	NR	rs3093662-A	0.92	2E-10		0.0223	[0.015-0.029] unit increase	NR [NR]	N
606	chr6_dbb_hap3	2830182	2830183	rs3093664	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MICB	5,339 Icelandic ancestry individuals	NA	6p21.33		rs3093664-G	0.08964	1E-117		0.671593	[0.61-0.73] unit increase	Illumina [7506463] (imputed)	N
606	chr6_dbb_hap3	2830182	2830183	rs3093664	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p21.33	TNF	rs3093664-G	0.048	3E-7		0.13	[0.081-0.179] unit increase	Affymetrix, Illumina [7374092] (imputed)	N
606	chr6_dbb_hap3	2830182	2830183	rs3093664	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs3093664-A	0.916875	8E-64	(MICB, 9328_55_3)	0.73897094	[0.66-0.82] unit decrease	Illumina [> 1000000] (imputed)	N
606	chr6_dbb_hap3	2830182	2830183	rs3093664	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs3093664-A	0.916875	8E-11	(C4A C4B, 2182_54_1)	0.29393905	[0.21-0.38] unit increase	Illumina [> 1000000] (imputed)	N
606	chr6_dbb_hap3	2830182	2830183	rs3093664	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs3093664-A	0.916875	3E-14	(IL36A, 14150_7_3)	0.34182286	[0.25-0.43] unit increase	Illumina [> 1000000] (imputed)	N
606	chr6_dbb_hap3	2830182	2830183	rs3093664	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs3093664-A	0.916875	1E-111	(MICB, 5102_55_3)	0.9721669	[0.89-1.05] unit decrease	Illumina [> 1000000] (imputed)	N
606	chr6_dbb_hap3	2830182	2830183	rs3093664	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs3093664-A	0.916875	1E-10	(USP25, 9215_117_3)	0.28181827	[0.2-0.37] unit decrease	Illumina [> 1000000] (imputed)	N
606	chr6_dbb_hap3	2832390	2832391	rs1800628	27749845	Lesseur C	2016-10-17	Nat Genet	Genome-wide association analyses identify new susceptibility loci for oral cavity and pharyngeal cancer.	Oral cavity cancer	2,717 European ancestry cases, 273 cases, 5,984 European ancestry controls, 601 controls	NA	6p21.33	MICB, AIF1	rs1800628-A	0.07	7E-8		1.3962	NR	Illumina [7574753] (imputed)	N
606	chr6_dbb_hap3	2833054	2833055	rs769178	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs769178-G	0.94078125	8E-31	(NCR3, 3003_29_2)	0.5867702	[0.49-0.69] unit increase	Illumina [> 1000000] (imputed)	N
606	chr6_dbb_hap3	2833054	2833055	rs769178	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs769178-G	0.94078125	4E-26	(ISG15, 14148_2_3)	0.54343	[0.44-0.64] unit increase	Illumina [> 1000000] (imputed)	N
606	chr6_dbb_hap3	2833054	2833055	rs769178	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs769178-G	0.94078125	3E-10	(TNXB, 5698_60_3)	0.32249722	[0.22-0.42] unit increase	Illumina [> 1000000] (imputed)	N
606	chr6_dbb_hap3	2833054	2833055	rs769178	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs769178-G	0.94078125	1E-40	(MICA, 2730_58_2)	0.67921454	[0.58-0.78] unit increase	Illumina [> 1000000] (imputed)	N
606	chr6_dbb_hap3	2833054	2833055	rs769178	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs769178-G	0.94078125	1E-33	(C2, 3186_2_2)	0.63008285	[0.53-0.73] unit increase	Illumina [> 1000000] (imputed)	N
606	chr6_dbb_hap3	2833151	2833152	rs769177	30226566	Yamada Y	2018-09-04	Int J Mol Med	Identification of 13 novel susceptibility loci for early-onset myocardial infarction, hypertension, or chronic kidney disease.	Hypertension	3,444 Japanese ancestry cases, 4,636 Japanese ancestry controls	NA	6p21.33	Intergenic	rs769177-G	0.8280000000000001	1E-6		1.2345679		Illumina [31276]	N
606	chr6_dbb_hap3	2838391	2838392	rs7758790	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.33		rs7758790-T	0.774	1E-27				Affymetrix [10369434] (imputed)	N
606	chr6_dbb_hap3	2840672	2840673	rs2256965	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6p21.33		rs2256965-A	0.4188	2E-13		0.0106	[0.0079-0.0133] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
606	chr6_dbb_hap3	2840934	2840935	rs2256974	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.33	NR	rs2256974-A	0.375	2E-25		0.842	[0.81-0.88]	Illumina [11270530] (imputed)	N
606	chr6_dbb_hap3	2840934	2840935	rs2256974	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Tumor necrosis factor receptor 2 levels	21,758 European ancestry individuals	9,173 individuals	6p21.33		rs2256974-A	0.18	3E-10		0.0632	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
606	chr6_dbb_hap3	2840934	2840935	rs2256974	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p21.33	LST1	rs2256974-A	0.173581	3E-16		0.026160087	[0.02-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
606	chr6_dbb_hap3	2840934	2840935	rs2256974	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	6p21.33	LST1	rs2256974-A	0.17355	5E-37		0.039224777	[0.033-0.045] unit increase	Affymetrix [93095623] (imputed)	N
606	chr6_dbb_hap3	2841022	2841023	rs200801362	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	6p21.33	LST1	rs200801362-T	0.839907	4E-13		0.0188461	[0.014-0.024] unit decrease	Affymetrix [12370749]	N
606	chr6_dbb_hap3	2841701	2841701	rs28986170	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FEV1/FVC)	48,943 European ancestry individuals	57,176 European ancestry individuals, 38,199 individuals.	6p21.33	LST1	rs28986170-?	0.752	2E-10	(conditioned on rs2070600, rs9272528)	0.063	[0.043-0.083] unit increase	Affymetrix [27624732] (imputed)	N
606	chr6_dbb_hap3	2842125	2842126	rs1052248	33768542	Liu Y	2021-03-26	Clin Pharmacol Ther	Class II HLA Variants Associate with Risk of Pegaspargase Hypersensitivity.	Asparaginase hypersensitivity in acute lymphoblastic leukemia	798 Native American individuals	NA	6p21.33	NR	rs1052248-A	NR	4E-7		2.31	[NR]	Illumina [NR] (imputed)	N
606	chr6_dbb_hap3	2842125	2842126	rs1052248	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	6p21.33	Intergenic	rs1052248-A	0.2609	2E-8	(MTAG)	0.0146	[0.0095-0.0197] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
606	chr6_dbb_hap3	2842125	2842126	rs1052248	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p21.33	LST1	rs1052248-A	0.28	3E-17		1.05	[1.04-1.06]	Illumina [at least 560000] (imputed)	N
606	chr6_dbb_hap3	2842253	2842254	rs986475	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NCR3	rs986475-G	0.071	1E-31	(Natural cytotoxicity triggering receptor 3, NCR3.3003.29.2)	0.55	[0.45-0.65] unit decrease	Affymetrix [10572788] (imputed)	N
606	chr6_dbb_hap3	2843035	2843036	rs11575841	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	6p21.33	NR	rs11575841-?	NR	5E-20		9.163	NR z score decrease	Illumina [at least 830937] (imputed)	N
606	chr6_dbb_hap3	2843335	2843336	rs11575839	23028341	Yang X	2012-09-13	PLoS Genet	Genome-wide association study for serum complement C3 and C4 levels in healthy Chinese subjects.	Complement C3 and C4 levels	1,999 Han Chinese ancestry male individuals	1,496 Han Chinese ancestry male individuals	6p21.33	HLA-C	rs11575839-A	0.05	1E-54	(Serum level of C4)	0.23	[0.21-0.25] g/L decrease	Illumina [1940245] (imputed)	N
606	chr6_dbb_hap3	2843719	2843720	rs148533164	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.33		rs148533164-G	0.952	3E-15				Affymetrix [10369434] (imputed)	N
606	chr6_dbb_hap3	2843808	2843809	rs28732145	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p21.33	NR	rs28732145-?	NR	2E-11		0.2045	[0.15-0.26] unit increase	Illumina [at least 560000] (imputed)	N
606	chr6_dbb_hap3	2846214	2846215	rs11575837	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6p21.33		rs11575837-?	NR	5E-8		1.20533	[1.14-1.27]	NR [685523]	N
606	chr6_dbb_hap3	2846214	2846215	rs11575837	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.33	NR	rs11575837-T	0.012	8E-13		0.58141	[0.42-0.74] unit increase	Affymetrix [up to 8900000] (imputed)	N
606	chr6_dbb_hap3	2846903	2846904	rs28732146	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	NCR3	rs28732146-A	NR	1E-11		0.0239586	[0.017-0.031] unit decrease	Affymetrix [321016] (imputed)	N
606	chr6_dbb_hap3	2846903	2846904	rs28732146	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	NCR3	rs28732146-A	NR	2E-17		0.0326707	[0.025-0.04] unit decrease	Affymetrix [323123] (imputed)	N
606	chr6_dbb_hap3	2847065	2847066	rs9357135	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	6p21.33		rs9357135-T	0.046397421	1E-19		0.60996497	[0.48-0.74] unit increase	Illumina [13429980] (imputed)	N
606	chr6_dbb_hap3	2847700	2847701	rs2857599	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	NCR3	rs2857599-A	NR	1E-19		0.0348769	[0.027-0.042] unit decrease	Affymetrix [321016] (imputed)	N
606	chr6_dbb_hap3	2847700	2847701	rs2857599	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	6p21.33	Intergenic	rs2857599-G	NR	3E-8		0.0262207	[0.017-0.036] unit increase	Illumina [13519193] (imputed)	N
606	chr6_dbb_hap3	2847715	2847716	rs536378929	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	6p21.33	NCR3	rs536378929-T	0.9236	9E-26		0.0494	[0.04-0.059] unit decrease	Affymetrix [18391927] (imputed)	N
606	chr6_dbb_hap3	2848165	2848166	rs2515920	30226566	Yamada Y	2018-09-04	Int J Mol Med	Identification of 13 novel susceptibility loci for early-onset myocardial infarction, hypertension, or chronic kidney disease.	Hypertension	3,444 Japanese ancestry cases, 4,636 Japanese ancestry controls	NA	6p21.33	NCR3	rs2515920-T	0.827	5E-7		1.2345679		Illumina [31276]	N
606	chr6_dbb_hap3	2848314	2848315	rs3130632	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	NCR3	rs3130632-T	NR	1E-10		0.022096	[0.015-0.029] unit decrease	Affymetrix [319769] (imputed)	N
606	chr6_dbb_hap3	2848314	2848315	rs3130632	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	NCR3	rs3130632-T	NR	9E-10		0.0210507	[0.014-0.028] unit decrease	Affymetrix [319769] (imputed)	N
606	chr6_dbb_hap3	2848314	2848315	rs3130632	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	NCR3	rs3130632-T	NR	7E-11		0.0226077	[0.016-0.029] unit decrease	Affymetrix [321169] (imputed)	N
606	chr6_dbb_hap3	2848317	2848318	rs34744948	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.33	NR	rs34744948-?	NR	4E-11				Affymetrix [~ 8270000] (imputed)	N
606	chr6_dbb_hap3	2848778	2848779	rs2857598	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	NCR3	rs2857598-A	NR	4E-15		0.0338966	[0.025-0.042] unit increase	Affymetrix [323123] (imputed)	N
606	chr6_dbb_hap3	2848778	2848779	rs2857598	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.33	Intergenic	rs2857598-C	NR	7E-8	(women)	0.0362414	[0.023-0.049] unit decrease	Illumina [13520550] (imputed)	N
606	chr6_dbb_hap3	2848778	2848779	rs2857598	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.33	Intergenic	rs2857598-C	NR	5E-11		0.0308295	[0.022-0.04] unit decrease	Illumina [13520550] (imputed)	N
606	chr6_dbb_hap3	2848778	2848779	rs2857598	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	6p21.33	Intergenic	rs2857598-C	NR	9E-20		0.0496215	[0.039-0.06] unit decrease	Illumina [13520550] (imputed)	N
606	chr6_dbb_hap3	2848790	2848791	rs3132452	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	6p21.33	NR	rs3132452-?	NR	2E-7		0.095	[0.059-0.131] unit increase	Illumina [at least 560000] (imputed)	N
606	chr6_dbb_hap3	2849717	2849718	rs2515919	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	NCR3	rs2515919-G	NR	5E-12		0.020055	[0.014-0.026] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_dbb_hap3	2849717	2849718	rs2515919	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	NCR3	rs2515919-G	NR	2E-8		0.0182636	[0.012-0.025] unit increase	Affymetrix [323858] (imputed)	N
606	chr6_dbb_hap3	2849717	2849718	rs2515919	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	NCR3	rs2515919-G	NR	7E-11		0.0189369	[0.013-0.025] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_dbb_hap3	2849717	2849718	rs2515919	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	NCR3	rs2515919-G	NR	2E-10		0.0184288	[0.013-0.024] unit decrease	Affymetrix [321016] (imputed)	N
606	chr6_dbb_hap3	2849717	2849718	rs2515919	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	NCR3	rs2515919-G	NR	1E-28		0.0351117	[0.029-0.041] unit decrease	Affymetrix [323123] (imputed)	N
606	chr6_dbb_hap3	2849717	2849718	rs2515919	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	NCR3	rs2515919-G	NR	8E-13		0.0210432	[0.015-0.027] unit increase	Affymetrix [321169] (imputed)	N
606	chr6_dbb_hap3	2849717	2849718	rs2515919	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	6p21.33	Intergenic	rs2515919-A	0.6258	1E-10	(MTAG)	0.0119	[0.0082-0.0156] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
606	chr6_dbb_hap3	2849717	2849718	rs2515919	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	6p21.33	Intergenic	rs2515919-A	0.6255	3E-16	(MTAG)	0.0139	[0.011-0.017] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
606	chr6_dbb_hap3	2849717	2849718	rs2515919	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6p21.33	Intergenic	rs2515919-A	0.63	3E-16	(MTAG)	0.0111	[0.0084-0.0138] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
606	chr6_dbb_hap3	2850371	2850372	rs2844480	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p21.33	NR	rs2844480-?	NR	2E-18		0.0887	[0.069-0.108] unit increase	Illumina [at least 560000] (imputed)	N
606	chr6_dbb_hap3	2850860	2850861	rs150379130	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	NCR3	rs150379130-T	NR	4E-9		0.0270941	[0.018-0.036] unit decrease	Affymetrix [323123] (imputed)	N
606	chr6_dbb_hap3	2851087	2851088	rs111728624	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	NCR3	rs111728624-C	NR	3E-11		0.0281508	[0.02-0.036] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_dbb_hap3	2851087	2851088	rs111728624	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.33	NCR3	rs111728624-C	NR	2E-8		0.0241088	[0.016-0.032] unit increase	Affymetrix [321114] (imputed)	N
606	chr6_dbb_hap3	2851087	2851088	rs111728624	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	NCR3	rs111728624-C	NR	1E-11		0.0289838	[0.021-0.037] unit increase	Affymetrix [321169] (imputed)	N
606	chr6_dbb_hap3	2851723	2851724	rs3130631	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p21.33	NR	rs3130631-?	NR	2E-9		0.0861	[0.058-0.115] unit decrease	Illumina [at least 560000] (imputed)	N
606	chr6_dbb_hap3	2852395	2852396	rs17200816	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	NCR3	rs17200816-T	NR	2E-11		0.0283425	[0.02-0.037] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_dbb_hap3	2852976	2852977	rs2857596	32752121	Nedoszytko B	2020-07-31	Int J Mol Sci	Results from a Genome-Wide Association Study (GWAS) in Mastocytosis Reveal New Gene Polymorphisms Associated with WHO Subgroups.	Systemic mastocytosis	93 European ancestry cases, 5,606 European ancestry controls	NA	6p21.33	NRC3	rs2857596-C	0.2394	2E-10		2.582	[2.28-2.88]	Illumina [281811]	N
606	chr6_dbb_hap3	2854024	2854025	rs2857595	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	NCR3	rs2857595-A	NR	3E-11		0.0254138	[0.018-0.033] unit decrease	Affymetrix [127266] (imputed)	N
606	chr6_dbb_hap3	2854024	2854025	rs2857595	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FEV1/FVC)	48,943 European ancestry individuals	57,176 European ancestry individuals, 38,199 individuals.	6p21.33	NCR3	rs2857595-A	0.213	4E-9		0.048	[0.032-0.064] unit decrease	Affymetrix [27624732] (imputed)	N
606	chr6_dbb_hap3	2854024	2854025	rs2857595	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FEV1)	48,943 European ancestry individuals.	57,176 European ancestry individuals, 38,199 individuals.	6p21.33	NCR3	rs2857595-A	0.21	2E-6		0.039	[0.023-0.055] unit decrease	Affymetrix [up to 27624732] (imputed)	N
606	chr6_dbb_hap3	2854024	2854025	rs2857595	25936594	Tomer Y	2015-04-27	J Autoimmun	Genome wide identification of new genes and pathways in patients with both autoimmune thyroiditis and type 1 diabetes.	Type 1 diabetes and autoimmune thyroid diseases	346 European ancestry cases, 727 European ancestry controls	185 European ancestry cases, 340 European ancestry controls	6p21.33	NFKBIL1, LTA, NCR3	rs2857595-T	NR	2E-23		2.3765		Illumina [514008]	N
606	chr6_dbb_hap3	2854024	2854025	rs2857595	25194280	Wei Q	2014-09-07	Nat Genet	Genome-wide association study identifies three susceptibility loci for laryngeal squamous cell carcinoma in the Chinese population.	Laryngeal squamous cell carcinoma	993 Chinese ancestry cases, 1,995 Chinese ancestry controls	2,398 Chinese ancestry cases, 2,804 Chinese ancestry controls	6p21.33	AIF1, HLA	rs2857595-?	0.50	2E-15		1.3	[1.22-1.39]	Affymetrix [662108]	N
606	chr6_dbb_hap3	2854024	2854025	rs2857595	23284291	Hancock DB	2012-12-20	PLoS Genet	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (smoking interaction)	50,047 European ancestry individuals	NA	6p21.33	NCR3	rs2857595-?	NR	8E-8	(FEV1/FVC, Ever-smoking)			NR [~ 2500000] (imputed)	N
606	chr6_dbb_hap3	2854024	2854025	rs2857595	21946350	Soler Artigas M	2011-09-25	Nat Genet	Genome-wide association and large-scale follow up identifies 16 new loci influencing lung function.	Pulmonary function	48,201 European ancestry individuals	46,411 European ancestry individuals	6p21.33	NCR3	rs2857595-G	0.81	2E-10	(FEV1/FVC)	0.037	[0.025-0.049] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
606	chr6_dbb_hap3	2854024	2854025	rs2857595	21946350	Soler Artigas M	2011-09-25	Nat Genet	Genome-wide association and large-scale follow up identifies 16 new loci influencing lung function.	Pulmonary function	48,201 European ancestry individuals	46,411 European ancestry individuals	6p21.33	NCR3	rs2857595-G	0.81	1E-6	(FEV1)	0.025	[0.02-0.04] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
606	chr6_dbb_hap3	2855073	2855074	rs17207190	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Strep throat	52,487 European ancestry cases, 22,017 European ancestry controls	NA	6p21.33	NR	rs17207190-?	NR	8E-8		0.0766	[0.049-0.105] unit decrease	Illumina [at least 560000] (imputed)	N
606	chr6_dbb_hap3	2855257	2855258	rs2507960	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Diastolic blood pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	6p21.33	HLA	rs2507960-A	0.139916952	3E-6		0.1878	[0.11-0.27] unit increase	Affymetrix [~ 9800000] (imputed)	N
606	chr6_dbb_hap3	2855454	2855455	rs9267516	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	6p21.33		rs9267516-T	0.364098	1E-16		0.0286201	[0.024-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
606	chr6_dbb_hap3	2857885	2857886	rs2736186	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	Intergenic	rs2736186-A	0.03768844	1E-29	(EA, Neutrophil collagenase)	1.233	[1.03-1.44] unit increase	Affymetrix [509946]	N
606	chr6_dbb_hap3	2858196	2858197	rs2857594	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	Triglyceride levels	291,107 British ancestry individuals	NA	6p21.33	TBC1D22B	rs2857594-C	0.148615	4E-11		0.01965	[0.014-0.025] unit decrease	Affymetrix [9463307] (imputed)	N
606	chr6_dbb_hap3	2858196	2858197	rs2857594	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	Systolic blood pressure	291,107 British ancestry individuals	NA	6p21.33	TBC1D22B	rs2857594-C	0.148615	1E-7		0.36076	[0.23-0.49] unit decrease	Affymetrix [9463307] (imputed)	N
606	chr6_dbb_hap3	2858216	2858217	rs41291790	35232999	Garcia-Etxebarria K	2022-03-01	Sci Rep	Local genetic variation of inflammatory bowel disease in Basque population and its effect in risk prediction.	Ulcerative colitis	208 European ancestry cases, 935 European ancestry controls	NA	6p21.33		rs41291790-A	0.022	3E-8		5.3		Illumina [5409651] (imputed)	N
606	chr6_dbb_hap3	2858216	2858217	rs41291790	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	334,944 European ancestry, NR ancestry individuals	NA	6p21.33		rs41291790-?	NR	5E-8				Affymetrix [NR] (imputed)	N
606	chr6_dbb_hap3	2858508	2858509	rs2844479	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	UQCRHP1	rs2844479-C	NR	4E-14		0.0227975	[0.017-0.029] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_dbb_hap3	2858508	2858509	rs2844479	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	UQCRHP1	rs2844479-C	NR	6E-13		0.02173	[0.016-0.028] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_dbb_hap3	2858508	2858509	rs2844479	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	UQCRHP1	rs2844479-C	NR	8E-11		0.0195735	[0.014-0.025] unit decrease	Affymetrix [321016] (imputed)	N
606	chr6_dbb_hap3	2858508	2858509	rs2844479	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	UQCRHP1	rs2844479-C	NR	1E-14		0.0236304	[0.018-0.03] unit increase	Affymetrix [321169] (imputed)	N
606	chr6_dbb_hap3	2858508	2858509	rs2844479	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	6p21.33		rs2844479-C	0.326375	4E-26		0.027727867	[0.023-0.033] unit increase	Affymetrix [93095623] (imputed)	N
606	chr6_dbb_hap3	2858508	2858509	rs2844479	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	6p21.33	AIF1	rs2844479-A	0.66	3E-10		1.14	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
606	chr6_dbb_hap3	2858508	2858509	rs2844479	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs2844479-C	0.393698650943396	4E-6	(IGP60)	0.151	[0.087-0.215] unit increase	Illumina [~ 2500000] (imputed)	N
606	chr6_dbb_hap3	2858508	2858509	rs2844479	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs2844479-C	0.393631380483438	4E-6	(IGP6)	0.1506	[0.086-0.215] unit decrease	Illumina [~ 2500000] (imputed)	N
606	chr6_dbb_hap3	2858508	2858509	rs2844479	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs2844479-C	0.393516127507802	9E-6	(IGP61)	0.1445	[0.081-0.208] unit increase	Illumina [~ 2500000] (imputed)	N
606	chr6_dbb_hap3	2858508	2858509	rs2844479	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs2844479-C	0.393054780607685	7E-6	(IGP58)	0.1476	[0.083-0.212] unit increase	Illumina [~ 2500000] (imputed)	N
606	chr6_dbb_hap3	2858508	2858509	rs2844479	19079260	Thorleifsson G	2008-12-14	Nat Genet	Genome-wide association yields new sequence variants at seven loci that associate with measures of obesity.	Weight	72,598 European ancestry individuals, 1,160 African American individuals	Up to 11,036 European ancestry individuals, 32,615 individuals	6p21.33	AIF1, NCR3	rs2844479-T	0.68	2E-8		3.58	[2.33-4.83] percentage SD increase	Illumina [305846]	N
606	chr6_dbb_hap3	2858662	2858663	rs9267517	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	IgD on unswitched memory B cell	3,636 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs9267517-A	0.2447	1E-13		0.2671	[0.2-0.34] unit decrease	Illumina [18230756] (imputed)	N
606	chr6_dbb_hap3	2859129	2859130	rs144360625	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	6p21.33		rs144360625-C	0.125812	9E-19		0.029980848	[0.023-0.037] unit increase	Affymetrix [93095623] (imputed)	N
606	chr6_dbb_hap3	2859129	2859130	rs144360625	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	6p21.33	NR	rs144360625-?	NR	3E-11	(MIC-A)	0.57967	[0.41-0.75] unit decrease	Illumina [11901634] (imputed)	N
606	chr6_dbb_hap3	2859709	2859709	rs144831544	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	UQCRHP1	rs144831544-AAATTAGC	NR	7E-14		0.026213	[0.019-0.033] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_dbb_hap3	2859709	2859709	rs144831544	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	UQCRHP1	rs144831544-AAATTAGC	NR	4E-13		0.0254281	[0.019-0.032] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_dbb_hap3	2859709	2859709	rs144831544	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	UQCRHP1	rs144831544-AAATTAGC	NR	9E-16		0.0284632	[0.022-0.035] unit increase	Affymetrix [321169] (imputed)	N
606	chr6_dbb_hap3	2860092	2860093	rs28895016	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	6p21.33	NCR3, AIF1	rs28895016-C	0.91	9E-16		1.097	[1.07-1.12]	Affymetrix, Illumina [8307659] (imputed)	N
606	chr6_dbb_hap3	2860467	2860468	rs28366149	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	UQCRHP1	rs28366149-A	NR	4E-9		0.0225023	[0.015-0.03] unit decrease	Affymetrix [323123] (imputed)	N
606	chr6_dbb_hap3	2860639	2860640	rs28474889	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	6p21.33	UQCRHP1	rs28474889-T	0.200504	2E-19		0.025810601	[0.02-0.031] unit increase	Affymetrix [93095623] (imputed)	N
606	chr6_dbb_hap3	2860639	2860640	rs28474889	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6p21.33	UQCRHP1	rs28474889-T	0.200511	2E-24		0.02926071	[0.024-0.035] unit increase	Affymetrix [93095623] (imputed)	N
606	chr6_dbb_hap3	2860639	2860640	rs28474889	29773799	Horikoshi M	2018-05-17	Nat Commun	Elucidating the genetic architecture of reproductive ageing in the Japanese population.	Menopause (age at onset)	43,861 Japanese ancestry women	32,545 European ancestry women	6p21.33	MSH5 / HLA	rs28474889-C	0.73	5E-16	(japanese)	0.24	[0.18-0.3] year increase	Illumina [at least 532488] (imputed)	N
606	chr6_dbb_hap3	2860842	2860843	rs9348876	22936669	Julia A	2012-08-30	Gut	A genome-wide association study on a southern European population identifies a new Crohn's disease susceptibility locus at RBX1-EP300.	Crohn's disease	1,277 European ancestry cases, 1,488 European ancestry controls	1,365 European ancestry cases, 1,396 European ancestry controls	6p21.33	AIF1	rs9348876-T	0.06	3E-6		1.41	[1.22-1.63]	Illumina [508934]	N
606	chr6_dbb_hap3	2861191	2861192	rs28732148	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	6p21.33	AIF1	rs28732148-C	0.932302	2E-9		0.0218984	[0.015-0.029] unit decrease	NR [13737936] (imputed)	N
606	chr6_dbb_hap3	2862664	2862665	rs3130060	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	UQCRHP1	rs3130060-T	NR	8E-10		0.0239184	[0.016-0.032] unit decrease	Affymetrix [323858] (imputed)	N
606	chr6_dbb_hap3	2862664	2862665	rs3130060	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	UQCRHP1	rs3130060-T	NR	2E-8		0.0217476	[0.014-0.029] unit decrease	Affymetrix [127266] (imputed)	N
606	chr6_dbb_hap3	2862664	2862665	rs3130060	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	UQCRHP1	rs3130060-T	NR	6E-9		0.0221795	[0.015-0.03] unit increase	Affymetrix [323123] (imputed)	N
606	chr6_dbb_hap3	2862847	2862848	rs2857702	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	UQCRHP1	rs2857702-C	NR	7E-9		0.0219268	[0.015-0.029] unit decrease	Affymetrix [323123] (imputed)	N
606	chr6_dbb_hap3	2866085	2866086	rs3993747	31263887	Adams MJ	2019-07-01	Int J Epidemiol	Factors associated with sharing e-mail information and mental health survey participation in large population cohorts.	Mental health study participation (completed survey)	122,647 British ancestry cases, 248,781 British ancestry controls	NA	6p21.33	NR	rs3993747-A	0.65	1E-9		1.0319917	[1.02-1.04]	NR [16367095] (imputed)	N
606	chr6_dbb_hap3	2866117	2866118	rs2471960	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Non-Hodgkin's lymphoma	2,400 European ancestry cases, 410,350 European ancestry controls	NA	6p21.33		rs2471960-A	NR	1E-11		1.2300123	NR	Affymetrix [7846216] (imputed)	N
606	chr6_dbb_hap3	2866615	2866616	rs542914466	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.33	NR	rs542914466-A	0.009	2E-37	(conditional)	18.321	[17.88-18.77]	Illumina [11270530] (imputed)	N
606	chr6_dbb_hap3	2867599	2867600	rs3132451	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	AIF1	rs3132451-C	NR	3E-14		0.0290333	[0.022-0.037] unit decrease	Affymetrix [323858] (imputed)	N
606	chr6_dbb_hap3	2867599	2867600	rs3132451	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	AIF1	rs3132451-C	NR	1E-12		0.0272438	[0.02-0.035] unit decrease	Affymetrix [127266] (imputed)	N
606	chr6_dbb_hap3	2867599	2867600	rs3132451	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	AIF1	rs3132451-C	NR	3E-15		0.029579	[0.022-0.037] unit increase	Affymetrix [323123] (imputed)	N
606	chr6_dbb_hap3	2867599	2867600	rs3132451	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	AIF1	rs3132451-C	0.217	7E-56	(cAMP-specific 3',5'-cyclic phosphodiesterase 4D, PDE4D.5255.22.3)	0.46	[0.4-0.52] unit decrease	Affymetrix [10572788] (imputed)	N
606	chr6_dbb_hap3	2867599	2867600	rs3132451	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	AIF1	rs3132451-C	0.217	4E-34	(T-cell surface protein tactile, CD96.9735.44.3)	0.36	[0.3-0.42] unit decrease	Affymetrix [10572788] (imputed)	N
606	chr6_dbb_hap3	2867599	2867600	rs3132451	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	AIF1	rs3132451-C	0.217	2E-55	(Glutamate receptor 4, GRIA4.10760.107.3)	0.46	[0.4-0.52] unit decrease	Affymetrix [10572788] (imputed)	N
606	chr6_dbb_hap3	2867599	2867600	rs3132451	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	6p21.33	NCR3, AIF1	rs3132451-G	NR	3E-12		0.171592	[0.12-0.22] unit decrease	Illumina [at least 950000] (imputed)	N
606	chr6_dbb_hap3	2868729	2868730	rs2844475	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	AIF1	rs2844475-A	NR	2E-8		0.0183217	[0.012-0.025] unit increase	Affymetrix [323858] (imputed)	N
606	chr6_dbb_hap3	2868729	2868730	rs2844475	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	AIF1	rs2844475-A	NR	5E-13		0.0229918	[0.017-0.029] unit decrease	Affymetrix [323123] (imputed)	N
606	chr6_dbb_hap3	2868886	2868887	rs2736182	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	6p21.33	AIF1	rs2736182-A	0.019095	6E-9		0.0493347	[0.033-0.066] unit increase	Affymetrix [93095623] (imputed)	N
606	chr6_dbb_hap3	2868886	2868887	rs2736182	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	6p21.33	AIF1	rs2736182-A	0.019095	2E-13		0.06039303	[0.044-0.077] unit decrease	Affymetrix [93095623] (imputed)	N
606	chr6_dbb_hap3	2869415	2869416	rs34451818	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.33		rs34451818-G	NR	1E-9		1.2642225	[1.17-1.36]	Affymetrix [7846216] (imputed)	N
606	chr6_dbb_hap3	2871319	2871320	rs144309021	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	6p21.33	PRRC2A	rs144309021-T	0.1234	1E-9	(S1P d16:1)	0.1184	[0.08-0.156] unit decrease	Illumina [~ 47000000] (imputed)	N
606	chr6_dbb_hap3	2872035	2872036	rs2857695	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	AIF1	rs2857695-C	NR	2E-15		0.0312768	[0.024-0.039] unit increase	Affymetrix [323123] (imputed)	N
606	chr6_dbb_hap3	2872618	2872619	rs140054334	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.33	NR	rs140054334-T	0.017	7E-11		0.45969	[0.32-0.6] unit increase	Affymetrix [up to 8900000] (imputed)	N
606	chr6_dbb_hap3	2872618	2872619	rs140054334	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.33	NR	rs140054334-T	0.017	3E-6	(men)	0.387194	[0.23-0.55] unit increase	Affymetrix [up to 8900000] (imputed)	N
606	chr6_dbb_hap3	2873136	2873137	rs2736176	32109421	Li C	2020-02-20	Am J Hum Genet	Genome-Wide Association Analysis in Humans Links Nucleotide Metabolism to Leukocyte Telomere Length.	Leukocyte telomere length	78,592 European ancestry individuals	NA	6p21.33	PRRC2A	rs2736176-C	0.31	4E-10		0.035	[0.023-0.047] unit increase	Affymetrix, Illumina, Perlegen [up to 30071938] (imputed)	N
606	chr6_dbb_hap3	2873445	2873446	rs2857694	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PRRC2A	rs2857694-T	NR	2E-9		0.0174435	[0.012-0.023] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_dbb_hap3	2873445	2873446	rs2857694	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	PRRC2A	rs2857694-T	NR	4E-8		0.0161057	[0.01-0.022] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_dbb_hap3	2873955	2873956	rs2857693	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	PRRC2A	rs2857693-T	NR	2E-11		0.019953	[0.014-0.026] unit increase	Affymetrix [321169] (imputed)	N
606	chr6_dbb_hap3	2873955	2873956	rs2857693	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	6p21.33	BAT2	rs2857693-T	0.38	3E-29		0.034	[0.028-0.04] unit decrease	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
606	chr6_dbb_hap3	2874838	2874839	rs3115665	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic glomerulonephritis	566 European ancestry cases, 475,255 European ancestry controls, 210 East Asian ancestry cases, 174,345 East Asian ancestry controls	NA	6p21.33		rs3115665-G	NR	3E-8		0.929	[0.6-1.26] unit increase	Affymetrix, Illumina [25844108] (imputed)	N
606	chr6_dbb_hap3	2875250	2875251	rs2844472	33563987	Tyrrell J	2021-02-09	Nat Commun	Genetic predictors of participation in optional components of UK Biobank.	Acceptance of an invitation to participate in a mental health questionnaire	146,074 European ancestry cases, 148,713 European ancestry controls	NA	6p21.33	NR	rs2844472-A	0.65	2E-9		1.03	[1.02, 1.04]	Affymetrix [39302896] (imputed)	N
606	chr6_dbb_hap3	2875309	2875310	rs2736173	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p21.33	BAT2	rs2736173-A	0.03	2E-7	(EA)	3.58	[2.14-5.98]	Illumina [up to 547389]	N
606	chr6_dbb_hap3	2876472	2876473	rs2736172	24132900	Kanazawa T	2013-10-01	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of atypical psychosis.	Psychosis (atypical)	47 Japanese ancestry cases, 882 Japanese ancestry controls	NA	6p21.33	TNF, MICB	rs2736172-?		4E-6				Affymetrix [545513]	N
606	chr6_dbb_hap3	2877489	2877490	rs2260051	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		6p21.33	PRRC2A	rs2260051-A	0.438452	2E-17		0.011743	[0.009-0.0144] unit decrease	Affymetrix [12370749]	N
606	chr6_dbb_hap3	2877489	2877490	rs2260051	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	Waist circumference	291,107 British ancestry individuals	NA	6p21.33	PRRC2A	rs2260051-A	0.44273999	2E-13		0.230643	[0.17-0.29] unit decrease	Affymetrix [9463307] (imputed)	N
606	chr6_dbb_hap3	2877489	2877490	rs2260051	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	6p21.33	NR	rs2260051-A	0.4422	8E-15		0.019329904	[0.014-0.024] unit decrease	Affymetrix [10549349] (imputed)	N
606	chr6_dbb_hap3	2877489	2877490	rs2260051	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	6p21.33	PRRC2A	rs2260051-A	0.4425	1E-15		0.002	[0.0014-0.0026] unit increase	Affymetrix [15275733] (imputed)	N
606	chr6_dbb_hap3	2877489	2877490	rs2260051	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	223,215 British ancestry individuals	111,610 British ancestry individuals	6p21.33	PRRC2A	rs2260051-T	0.56	7E-12		0.002	[0.0014-0.0026] unit decrease	Affymetrix [15275733] (imputed)	N
606	chr6_dbb_hap3	2878391	2878392	rs3135044	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	6p21.33	NR	rs3135044-?		9E-11		0.0145909	[0.01-0.019] unit decrease	Affymetrix [19400418] (imputed)	N
606	chr6_dbb_hap3	2881058	2881059	rs2736171	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PRRC2A	rs2736171-G	NR	3E-9		0.0173452	[0.012-0.023] unit decrease	Affymetrix [321016] (imputed)	N
606	chr6_dbb_hap3	2881453	2881454	rs1046080	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Sex hormone-binding globulin levels	389,354 European ancestry individuals	NA	6p21.33		rs1046080-A	0.72	4E-8		0.013	nmol/L decrease	NR [NR] (imputed)	N
606	chr6_dbb_hap3	2881453	2881454	rs1046080	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	6p21.33		rs1046080-A	0.72	2E-18				NR [NR] (imputed)	N
606	chr6_dbb_hap3	2881453	2881454	rs1046080	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	6p21.33		rs1046080-A	0.72	4E-22		0.016	% increase	NR [NR] (imputed)	N
606	chr6_dbb_hap3	2881453	2881454	rs1046080	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Aspartate aminotransferase levels	424,778 European ancestry individuals	NA	6p21.33		rs1046080-A	0.72	2E-7		0.011	U/L decrease	NR [NR] (imputed)	N
606	chr6_dbb_hap3	2881453	2881454	rs1046080	32534018	Liu X	2020-06-10	Brain Behav Immun	Genetic factors underlying the bidirectional relationship between autoimmune and mental disorders - findings from a Danish population-based study.	Autoimmune traits	1,383 Danish ancestry cases, 62,656 Danish ancestry controls	NA	6p21.33	NR	rs1046080-C	0.26	2E-12		0.72	[0.65-0.79]	NR [7721839] (imputed)	N
606	chr6_dbb_hap3	2881453	2881454	rs1046080	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	6p21.33	NR	rs1046080-?	NR	5E-8		0.12785	[0.082-0.174] unit increase	Affymetrix [7794483] (imputed)	N
606	chr6_dbb_hap3	2881453	2881454	rs1046080	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	6p21.33	NR	rs1046080-?	NR	3E-6	(male)	0.13448	[0.078-0.191] unit increase	Affymetrix [7794483] (imputed)	N
606	chr6_dbb_hap3	2881453	2881454	rs1046080	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite ratios	Up to 5,591 European ancestry individuals	Up to 1,767 European ancestry individuals	6p21.33	PRRC2A	rs1046080-A	0.74	1E-14	(X-11444/X-11470)	0.027	[0.019-0.035] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
606	chr6_dbb_hap3	2881709	2881710	rs3132450	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PRRC2A	rs3132450-G	NR	7E-11		0.0268129	[0.019-0.035] unit decrease	Affymetrix [319769] (imputed)	N
606	chr6_dbb_hap3	2881709	2881710	rs3132450	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	PRRC2A	rs3132450-G	NR	8E-12		0.0285009	[0.02-0.037] unit decrease	Affymetrix [321169] (imputed)	N
606	chr6_dbb_hap3	2883271	2883272	rs3130623	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	6p21.33		rs3130623-T	NR	8E-24		0.0277	[0.022-0.033] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
606	chr6_dbb_hap3	2883279	2883280	rs2736163	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein APOM	5,364 Icelandic ancestry individuals	NA	6p21.33		rs2736163-T	0.03403	2E-15		0.413547	[0.31-0.52] unit decrease	Illumina [7506463] (imputed)	N
606	chr6_dbb_hap3	2883324	2883325	rs2242660	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cervical cancer	6,563 European ancestry cases, 410,350 European ancestry controls	NA	6p21.33		rs2242660-G	NR	2E-7		1.1015	NR	Affymetrix [7846216] (imputed)	N
607	chr6_dbb_hap3	2887414	2887415	rs3115663	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.33	BAT2	rs3115663-G	0.1812	7E-57		3.04	[NR]	Illumina [242824]	N
607	chr6_dbb_hap3	2888538	2888539	rs1046089	23894747	Aberg KA	2013-02-01	JAMA Psychiatry	A comprehensive family-based replication study of schizophrenia genes.	Schizophrenia	11,185 European ancestry cases, 10,768 European ancestry controls	1,262 African American ancestry individuals, 2,740 European ancestry individuals, 2,296 Asian ancestry individuals	6p21.33	PRRC2A, BAG6	rs1046089-G	0.34	4E-6	(EA)	1.3	[NR]	NR [1085772] (imputed)	N
607	chr6_dbb_hap3	2888538	2888539	rs1046089	23307926	Perry JR	2013-01-09	Hum Mol Genet	A genome-wide association study of early menopause and the combined impact of identified variants.	Menopause (age at onset)	3,493 European ancestry cases, 13,598 European ancestry controls	3,412 European ancestry cases, 4,928 European ancestry controls	6p21.33	NR	rs1046089-A	0.3492	4E-11		0.1919	[0.13-0.25] years increase	NR [NR]	N
607	chr6_dbb_hap3	2888538	2888539	rs1046089	22267201	Stolk L	2012-01-22	Nat Genet	Meta-analyses identify 13 loci associated with age at menopause and highlight DNA repair and immune pathways.	Menopause (age at onset)	38,968 European ancestry female individuals	Up to 14,435 European ancestry female individuals	6p21.33	PRRC2A	rs1046089-A	0.353	2E-16		0.213	[0.16-0.26] years decrease	Affymetrix, Illumina [2551160] (imputed)	N
607	chr6_dbb_hap3	2889162	2889163	rs2261033	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PRRC2A	rs2261033-G	NR	3E-12		0.0196963	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
607	chr6_dbb_hap3	2889162	2889163	rs2261033	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	PRRC2A	rs2261033-G	NR	2E-12		0.0222106	[0.016-0.028] unit increase	Affymetrix [323858] (imputed)	N
607	chr6_dbb_hap3	2889162	2889163	rs2261033	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	PRRC2A	rs2261033-G	NR	5E-11		0.0185935	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
607	chr6_dbb_hap3	2889162	2889163	rs2261033	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	PRRC2A	rs2261033-G	NR	2E-10		0.0200207	[0.014-0.026] unit increase	Affymetrix [127266] (imputed)	N
607	chr6_dbb_hap3	2889162	2889163	rs2261033	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PRRC2A	rs2261033-G	NR	2E-11		0.0189094	[0.013-0.024] unit decrease	Affymetrix [321016] (imputed)	N
607	chr6_dbb_hap3	2889162	2889163	rs2261033	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	PRRC2A	rs2261033-G	NR	3E-24		0.0314057	[0.025-0.037] unit decrease	Affymetrix [323123] (imputed)	N
607	chr6_dbb_hap3	2889162	2889163	rs2261033	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	PRRC2A	rs2261033-G	NR	2E-12		0.0202126	[0.015-0.026] unit increase	Affymetrix [321169] (imputed)	N
607	chr6_dbb_hap3	2889162	2889163	rs2261033	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.33	PRRC2A	rs2261033-A	0.5235	9E-11		0.0461	[0.032-0.06] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
607	chr6_dbb_hap3	2889926	2889927	rs35502919	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	PRRC2A	rs35502919-A	NR	5E-11		0.0387702	[0.027-0.05] unit increase	Affymetrix [321169] (imputed)	N
607	chr6_dbb_hap3	2889926	2889927	rs35502919	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	6p21.33	NR	rs35502919-?		9E-14	(AGER)	0.631	[NR] unit decrease	Illumina [NR]	N
607	chr6_dbb_hap3	2890162	2890163	rs10885	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p21.33	PRRC2A	rs10885-T		2E-36		0.035	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
607	chr6_dbb_hap3	2890465	2890466	rs34137317	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first birth	542,901 European ancestry individuals	NA	6p21.33	PRRC2A	rs34137317-T	0.0277	6E-10		0.2473	[0.17-0.33] unit increase	NR [9744772] (imputed)	N
607	chr6_dbb_hap3	2890770	2890771	rs2736155	34741163	Eijsbouts C	2021-11-05	Nat Genet	Genome-wide analysis of 53,400 people with irritable bowel syndrome highlights shared genetic pathways with mood and anxiety disorders.	Irritable bowel syndrome	53,400 European ancestry cases, 433,201 European ancestry controls	205,252 European ancestry cases, 1,384,055 European ancestry controls	6p21.33	NR	rs2736155-C	0.4758	3E-12		0.022300169	[0.016-0.029] unit increase	Illumina [9885498] (imputed)	N
607	chr6_dbb_hap3	2890770	2890771	rs2736155	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	PRRC2A	rs2736155-C	NR	6E-10		0.0194264	[0.013-0.026] unit increase	Affymetrix [323858] (imputed)	N
607	chr6_dbb_hap3	2890770	2890771	rs2736155	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	PRRC2A	rs2736155-C	NR	8E-9		0.0180894	[0.012-0.024] unit increase	Affymetrix [127266] (imputed)	N
607	chr6_dbb_hap3	2890770	2890771	rs2736155	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Anxiety	at least 23,606 European ancestry cases, at least 113,351 European ancestry controls	624,615 European ancestry cases, 1,310,854 European ancestry controls	6p21.33	PRRC2A	rs2736155-G	0.4811	5E-18		0.019583363	[0.015-0.025] unit decrease	NR [9417325] (imputed)	N
607	chr6_dbb_hap3	2890770	2890771	rs2736155	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p21.33	NR	rs2736155-C	0.478	6E-7		0.0059	[0.0035-0.0083] unit increase	NR [7666894] (imputed)	N
607	chr6_dbb_hap3	2891019	2891020	rs7889	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	6p21.33	BAG6	rs7889-C	0.3609	3E-8		0.012577614	[0.0082-0.017] unit increase	Affymetrix [11514654] (imputed)	N
607	chr6_dbb_hap3	2891019	2891020	rs7889	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	6p21.33	PRRC2A	rs7889-C	0.3904	4E-14		0.2499	[0.19-0.31] mmHg decrease	Affymetrix [NR] (imputed)	N
607	chr6_dbb_hap3	2891946	2891947	rs2077491	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	BAG6	rs2077491-C	NR	8E-13		0.0219509	[0.016-0.028] unit decrease	Affymetrix [323123] (imputed)	N
607	chr6_dbb_hap3	2891946	2891947	rs2077491	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	BAG6	rs2077491-C	NR	2E-15		0.0226711	[0.017-0.028] unit increase	Affymetrix [321169] (imputed)	N
607	chr6_dbb_hap3	2891946	2891947	rs2077491	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA	6p21.33	NR	rs2077491-?	NR	5E-6		0.0322	[0.018-0.046] unit decrease	Illumina [at least 560000] (imputed)	N
607	chr6_dbb_hap3	2892237	2892241	rs757744062	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.33	BAG6	rs757744062-CAAAA	0.8204	4E-8		0.0522	[0.034-0.071] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
607	chr6_dbb_hap3	2892326	2892327	rs2178899	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	6p21.33	NA	rs2178899-A	0.8833	5E-23		0.0243	[0.019-0.029] unit increase	NR [~ 27400000] (imputed)	N
607	chr6_dbb_hap3	2892620	2892621	rs750332	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls	NA	6p21.33	BAG6	rs750332-C	0.180658	4E-14		0.055028614	[0.041-0.069] unit decrease	Affymetrix [7288503] (imputed)	N
607	chr6_dbb_hap3	2896095	2896096	rs1077393	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	6p21.33	HLA-C	rs1077393-A	0.477302	2E-8		5.65	z score decrease	NR [10847151] (imputed)	N
607	chr6_dbb_hap3	2896095	2896096	rs1077393	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling worry	372,869 European ancestry individuals	NA	6p21.33	HLA-C	rs1077393-A	0.477302	4E-10		6.267	unit decrease	NR [10847151] (imputed)	N
607	chr6_dbb_hap3	2899312	2899313	rs3130048	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6p21.33	NR	rs3130048-?	NR	1E-11				Affymetrix [~ 8270000] (imputed)	N
607	chr6_dbb_hap3	2899312	2899313	rs3130048	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	6p21.33	NA	rs3130048-T	0.7315	2E-20		0.0169	[0.013-0.02] unit decrease	NR [~ 27400000] (imputed)	N
607	chr6_dbb_hap3	2901940	2901941	rs805303	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Systolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	6p21.33	BAT2, BAT5	rs805303-A	0.382	6E-6	(EA, initial)	0.368	[0.21-0.53] unit decrease	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
607	chr6_dbb_hap3	2901940	2901941	rs805303	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Diastolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	6p21.33	BAT2, BAT5	rs805303-A	0.382	4E-6	(EA, initial)	0.23	[0.13-0.33] unit decrease	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
607	chr6_dbb_hap3	2901940	2901941	rs805303	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Systolic blood pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	6p21.33	BAT2, BAT5	rs805303-A	0.3958	3E-6	(EA)	0.0174	unit decrease	Illumina [242296]	N
607	chr6_dbb_hap3	2901940	2901941	rs805303	21909115	Ehret GB	2011-09-11	Nature	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Systolic blood pressure	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	6p21.33	BAT2, BAT5	rs805303-G	0.61	2E-11		0.376	[NR] mmHg increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
607	chr6_dbb_hap3	2901940	2901941	rs805303	21909115	Ehret GB	2011-09-11	Nature	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Hypertension	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	6p21.33	BAT2, BAT5	rs805303-G	0.61	1E-10		0.054	[NR] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
607	chr6_dbb_hap3	2901940	2901941	rs805303	21909115	Ehret GB	2011-09-11	Nature	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Diastolic blood pressure	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	6p21.33	BAT2, BAT5	rs805303-G	0.61	3E-11		0.228	[NR] mmHg increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
607	chr6_dbb_hap3	2905712	2905713	rs2736201	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6p21.33	BAG6	rs2736201-C	0.156392	7E-12		0.036189657	[0.026-0.047] unit increase	Affymetrix [93095623] (imputed)	N
607	chr6_dbb_hap3	2905712	2905713	rs2736201	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	6p21.33	BAG6	rs2736201-C	0.156492	3E-71		0.06142095	[0.055-0.068] unit increase	Affymetrix [93095623] (imputed)	N
607	chr6_dbb_hap3	2906098	2906099	rs3117582	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Squamous cell lung carcinoma	8,350 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	6p21.33	NR	rs3117582-G	NR	2E-9		0.77	[0.71-0.84]	NR [NR] (imputed)	N
607	chr6_dbb_hap3	2906098	2906099	rs3117582	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Non-small cell lung cancer	27,120 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	6p21.33	NR	rs3117582-G	NR	2E-6		0.87	[0.82-0.92]	NR [NR] (imputed)	N
607	chr6_dbb_hap3	2906098	2906099	rs3117582	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p21.33	BAT3, APOM	rs3117582-C	0.34	1E-30				Illumina [118177]	N
607	chr6_dbb_hap3	2906098	2906099	rs3117582	19836008	Landi MT	2009-10-15	Am J Hum Genet	A genome-wide association study of lung cancer identifies a region of chromosome 5p15 associated with risk for adenocarcinoma.	Lung adenocarcinoma	5,739 European ancestry cases, 5,848 European ancestry controls	7,561 European ancestry cases, 13,818 European ancestry controls	6p21.33	APOM, BAT3	rs3117582-C	0.10	5E-12		1.22	[1.15-1.29]	Illumina [515922]	N
607	chr6_dbb_hap3	2906098	2906099	rs3117582	19654303	Broderick P	2009-08-04	Cancer Res	Deciphering the impact of common genetic variation on lung cancer risk: a genome-wide association study.	Lung cancer	1,952 European ancestry cases, 1,438 European ancestry controls	2,465 European ancestry cases, 3,005 European ancestry controls, 3,143 individuals, 3,762 individuals	6p21.33	BAT3	rs3117582-?	NR	4E-10		1.24	[1.16-1.33]	Illumina [511919]	N
607	chr6_dbb_hap3	2906098	2906099	rs3117582	18978787	Wang Y	2008-11-02	Nat Genet	Common 5p15.33 and 6p21.33 variants influence lung cancer risk.	Lung cancer	5,095 European ancestry cases, 5,200 European ancestry controls	2,448 European ancestry cases, 2,983 European ancestry controls	6p21.33	BAT3, MSH5	rs3117582-C	NR	5E-10		1.24	[1.16-1.33]	Illumina [223891]	N
607	chr6_dbb_hap3	2907621	2907622	rs1266078	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	APOM	rs1266078-G	0.032	3E-12	(Apolipoprotein M, APOM.10445.20.3)	0.49	[0.35-0.63] unit decrease	Affymetrix [10572788] (imputed)	N
607	chr6_dbb_hap3	2908184	2908185	rs805297	21844665	Hu HJ	2011-08-16	Exp Mol Med	Common variants at the promoter region of the APOM confer a risk of rheumatoid arthritis.	Rheumatoid arthritis	100 Korean ancestry cases, 600 Korean ancestry controls	578 Korean ancestry cases, 711 Korean ancestry controls	6p21.33	APOM	rs805297-A	0.36	3E-10		1.56	[1.36-1.80]	Affymetrix [300909]	N
607	chr6_dbb_hap3	2910043	2910044	rs113947529	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ISG15	5,349 Icelandic ancestry individuals	NA	6p21.33		rs113947529-T	0.01503	5E-16		0.622819	[0.47-0.77] unit decrease	Illumina [7506463] (imputed)	N
607	chr6_dbb_hap3	2913691	2913692	rs805263	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p21.33	C6orf47	rs805263-C	0.026972	3E-12		0.049836818	[0.036-0.064] unit increase	Affymetrix [93095623] (imputed)	N
607	chr6_dbb_hap3	2913975	2913976	rs148844907	33608531	Wu Y	2021-02-19	Nat Commun	GWAS of peptic ulcer disease implicates Helicobacter pylori infection, other gastrointestinal disorders and depression.	Inflammatory bowel disease	7,045 European ancestry cases, 449,282 European ancestry controls	NA	6p21.33	NR	rs148844907-T	0.99	1E-40		0.47	[NR]	NR [8546065] (imputed)	N
607	chr6_dbb_hap3	2913975	2913976	rs148844907	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p21.33	C6orf47	rs148844907-A	0.01	2E-12		1.92	[1.74-2.12]	Illumina [at least 560000] (imputed)	N
607	chr6_dbb_hap3	2914311	2914312	rs805262	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (mother's age at death or mother's attained age)	up to 699,000 individuals	NA	6p21.33	NR	rs805262-G		7E-7				Illumina [458525]	N
607	chr6_dbb_hap3	2916409	2916410	rs805260	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	GPANK1	rs805260-G	NR	8E-13		0.0307796	[0.022-0.039] unit decrease	Affymetrix [323123] (imputed)	N
607	chr6_dbb_hap3	2916912	2916913	rs76072474	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	6p21.33	NR	rs76072474-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
607	chr6_dbb_hap3	2916912	2916913	rs76072474	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	6p21.33	NR	rs76072474-?	NR	1E-11				Affymetrix [~ 8270000] (imputed)	N
607	chr6_dbb_hap3	2917712	2917713	rs3130618	25344690	Feenstra B	2014-10-26	Nat Genet	Common variants associated with general and MMR vaccine-related febrile seizures.	Febrile seizures (MMR vaccine-related)	929 European ancestry cases, 4,118 European ancestry controls	Up to 408 European ancestry cases, Up to 1,645 European ancestry controls	6p21.33	GPANK1	rs3130618-C	0.79	2E-7		1.34	[1.20-1.49]	Illumina [8129524] (imputed)	N
607	chr6_dbb_hap3	2917712	2917713	rs3130618	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.33	BAT4	rs3130618-A	0.1811	2E-56		3.03	[NR]	Illumina [242824]	N
607	chr6_dbb_hap3	2921522	2921523	rs115820082	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	CSNK2B, CSNK2B-LY6G5B-1181	rs115820082-G	NR	4E-12		0.0902636	[0.065-0.116] unit decrease	Affymetrix [321016] (imputed)	N
607	chr6_dbb_hap3	2921610	2921611	rs3117578	31375628	Tengvall K	2019-08-02	Proc Natl Acad Sci U S A	Molecular mimicry between Anoctamin 2 and Epstein-Barr virus nuclear antigen 1 associates with multiple sclerosis risk.	Anti-anoctamin 2 antibody levels	11,936 European ancestry individuals	NA	6p21.33	NR	rs3117578-A	NR	2E-7		0.063	[0.034-0.092] unit increase	Illumina [615763]	N
607	chr6_dbb_hap3	2922321	2922322	rs9267531	26316170	Demirci FY	2015-08-28	Arthritis Rheumatol	Identification of a New Susceptibility Locus for Systemic Lupus Erythematosus on Chromosome 12 in Individuals of European Ancestry.	Systemic lupus erythematosus	661 European ancestry cases, 487 European ancestry controls	4,467 European ancestry cases, 9,114 European ancestry controls	6p21.33	CSNK2B	rs9267531-?	NR	8E-8				Affymetrix [up to 700598]	N
607	chr6_dbb_hap3	2922321	2922322	rs9267531	25827949	Kunz M	2015-05-04	Exp Dermatol	Genome-wide association study identifies new susceptibility loci for cutaneous lupus erythematosus.	Cutaneous lupus erythematosus	151 European ancestry cases, 1,288 European ancestry controls	219 European ancestry cases, 262 European ancestry controls	6p21.33	CSNK2B, MSH5, MICA, MICB	rs9267531-G	0.1	3E-14		2.62	[1.93-3.54]	Affymetrix [906600]	N
607	chr6_dbb_hap3	2923757	2923758	rs805268	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p21.33		rs805268-A	0.969	9E-19				Affymetrix [10369434] (imputed)	N
607	chr6_dbb_hap3	2936774	2936775	rs9267536	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6p21.33	BAT5	rs9267536-?	NR	6E-6	(TAG 52:6)	0.34227857	[0.19-0.49] unit increase	Affymetrix [at least 2500000] (imputed)	N
607	chr6_dbb_hap3	2951021	2951022	rs805273	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	ABHD16A, XXbac-BPG32J3.20, MIR4646	rs805273-A	0.06820461	5E-16	(Complement C4)	0.699	[0.53-0.87] unit increase	Affymetrix [509946]	N
607	chr6_dbb_hap3	2951860	2951860	rs9281557	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.33	Intergenic	rs9281557-?	NR	2E-8		0.0260612	[0.017-0.035] unit decrease	Illumina [13520550] (imputed)	N
607	chr6_dbb_hap3	2951860	2951860	rs9281557	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.33	Intergenic	rs9281557-?	NR	2E-7	(women)	0.0341653	[0.021-0.047] unit decrease	Illumina [13520550] (imputed)	N
607	chr6_dbb_hap3	2951860	2951860	rs9281557	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	6p21.33	Intergenic	rs9281557-?	NR	1E-18		0.0471724	[0.037-0.058] unit decrease	Illumina [13520550] (imputed)	N
607	chr6_dbb_hap3	2955067	2955068	rs1266071	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	6p21.33	ABHD16A, XXbac-BPG32J3.20	rs1266071-T	0.107214	4E-14		0.027769113	[0.021-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
607	chr6_dbb_hap3	2957839	2957840	rs34406901	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	6p21.33	XXbac-BPG32J3.20	rs34406901-G	0.0566	7E-15		0.039119102	[0.029-0.049] unit increase	Affymetrix [93095623] (imputed)	N
607	chr6_dbb_hap3	2959007	2959008	rs9267546	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LIPA	5,367 Icelandic ancestry individuals	NA	6p21.33		rs9267546-A	0.08009	2E-15		0.274526	[0.21-0.34] unit increase	Illumina [7506463] (imputed)	N
607	chr6_dbb_hap3	2961336	2961337	rs2242653	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	6p21.33	NR	rs2242653-?	NR	3E-10	(MIC-A)	0.545677	[0.38-0.71] unit decrease	Illumina [11901634] (imputed)	N
607	chr6_dbb_hap3	2961556	2961557	rs9267548	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p21.33	NR	rs9267548-?	NR	5E-9		0.1189	[0.079-0.159] unit decrease	Illumina [at least 560000] (imputed)	N
607	chr6_dbb_hap3	2965036	2965037	rs805285	33941608	Khan A	2021-05-03	J Am Soc Nephrol	Medical Records-Based Genetic Studies of the Complement System.	Complement C4 levels	3,247 European ancestry individuals, 600 African ancestry individuals, 151 East Asian ancestry individuals	NA	6p21.33	C4	rs805285-C	0.32	1E-14		0.19	[0.15-0.22] unit increase	NR [NR] (imputed)	N
607	chr6_dbb_hap3	2965036	2965037	rs805285	33941608	Khan A	2021-05-03	J Am Soc Nephrol	Medical Records-Based Genetic Studies of the Complement System.	Complement C4 levels	3,247 European ancestry individuals, 600 African ancestry individuals, 151 East Asian ancestry individuals	NA	6p21.33	C4	rs805285-C	0.25	2E-10	(EA)	0.18	[0.14-0.22] unit increase	NR [NR] (imputed)	N
607	chr6_dbb_hap3	2972066	2972067	rs15574	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking initiation (ever regular vs never regular)	up to 433,216 European ancestry individuals	NA	6p21.33	LY6G6C	rs15574-A	0.194	7E-9		0.0159	[0.011-0.021] unit increase	Illumina [~ 250000] (imputed)	N
607	chr6_dbb_hap3	2973786	2973787	rs805294	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.33		rs805294-A	0.644	4E-13				Affymetrix [10369434] (imputed)	N
607	chr6_dbb_hap3	2974087	2974088	rs805293	31879980	German CA	2019-12-26	Genet Epidemiol	Ordered multinomial regression for genetic association analysis of ordinal phenotypes at Biobank scale.	Hypertension	30,822 British ancestry normal blood pressure individuals, 25,242 British ancestry elevated blood pressure individuals, 50,461 British ancestry stage 1 hypertension individuals, 75,286 British ancestry stage 2 hypertension individuals, 3,754 British ancestry hypertension crisis individuals	NA	6p21.33	MPIG6B	rs805293-?	NR	3E-12		0.0433015	NR unit decrease	Affymetrix [464137]	N
607	chr6_dbb_hap3	2974087	2974088	rs805293	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	6p21.33	NR	rs805293-A	0.46	8E-9		0.00643097	[0.0042-0.0086] unit decrease	NR [9732723] (imputed)	N
607	chr6_dbb_hap3	2977226	2977227	rs453098	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SEMA6C	5,362 Icelandic ancestry individuals	NA	6p21.33		rs453098-A	0.07505	1E-13		0.264219	[0.19-0.33] unit increase	Illumina [7506463] (imputed)	N
607	chr6_dbb_hap3	2977226	2977227	rs453098	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PCDHGA11	5,360 Icelandic ancestry individuals	NA	6p21.33		rs453098-A	0.07505	4E-12		0.237269	[0.17-0.3] unit increase	Illumina [7506463] (imputed)	N
607	chr6_dbb_hap3	2977226	2977227	rs453098	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HSPA1A	5,360 Icelandic ancestry individuals	NA	6p21.33		rs453098-A	0.07505	8E-15		0.272702	[0.2-0.34] unit increase	Illumina [7506463] (imputed)	N
607	chr6_dbb_hap3	2977955	2977956	rs11575845	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C6orf25	5,363 Icelandic ancestry individuals	NA	6p21.33		rs11575845-G	0.03386	7E-46		0.736966	[0.64-0.84] unit decrease	Illumina [7506463] (imputed)	N
607	chr6_dbb_hap3	2977955	2977956	rs11575845	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6p21.33		rs11575845-?	NR	4E-7		0.890554	[0.85-0.94]	NR [685523]	N
607	chr6_dbb_hap3	2977955	2977956	rs11575845	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	6p21.33	C6orf25	rs11575845-G	0.06333	6E-27		0.05543542	[0.045-0.066] unit increase	Affymetrix [93095623] (imputed)	N
607	chr6_dbb_hap3	2982955	2982956	rs805305	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C6orf25	5,363 Icelandic ancestry individuals	NA	6p21.33		rs805305-G	0.32	4E-22		0.196057	[0.16-0.24] unit increase	Illumina [7506463] (imputed)	N
607	chr6_dbb_hap3	2983126	2983127	rs707916	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling nervous	373,121 European ancestry individuals	NA	6p21.33	CCHCR1	rs707916-A	0.365563	2E-13		7.35	z score decrease	NR [10847151] (imputed)	N
607	chr6_dbb_hap3	2989981	2989982	rs115204832	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ISG15	5,349 Icelandic ancestry individuals	NA	6p21.33		rs115204832-G	0.01432	1E-183		2.1193	[1.98-2.26] unit decrease	Illumina [7506463] (imputed)	N
607	chr6_dbb_hap3	2989981	2989982	rs115204832	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C2	5,363 Icelandic ancestry individuals	NA	6p21.33		rs115204832-G	0.01432	1E-282		2.53186	[2.39-2.67] unit decrease	Illumina [7506463] (imputed)	N
607	chr6_dbb_hap3	2990696	2990697	rs145269503	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	6p21.33	CLIC1	rs145269503-A	0.0221	3E-36		0.1547004	[0.13-0.18] unit decrease	Affymetrix [~ 2500000] (imputed)	N
607	chr6_dbb_hap3	2992419	2992420	rs2736154	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		6p21.33	CLIC1	rs2736154-A	0.790274	4E-8		0.0109563	[0.007-0.0149] unit increase	Affymetrix [12370749]	N
607	chr6_dbb_hap3	2992421	2992422	rs396369	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	6p21.33		rs396369-T	NR	2E-15		0.0202	[0.015-0.025] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
607	chr6_dbb_hap3	2993099	2993100	rs28381344	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	6p21.33	NR	rs28381344-A	0.0438845616860758	1E-8		0.020618176	[0.014-0.028] unit increase	NR [NR]	N
607	chr6_dbb_hap3	2993099	2993100	rs28381344	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	6p21.33	NR	rs28381344-A	0.0438845616860758	1E-8		0.013281214	[0.0087-0.0179] unit increase	NR [NR]	N
607	chr6_dbb_hap3	2993099	2993100	rs28381344	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Strep throat	52,487 European ancestry cases, 22,017 European ancestry controls	NA	6p21.33	NR	rs28381344-?	NR	1E-6		0.0694	[0.041-0.098] unit decrease	Illumina [at least 560000] (imputed)	N
607	chr6_dbb_hap3	2993303	2993304	rs3131382	32752121	Nedoszytko B	2020-07-31	Int J Mol Sci	Results from a Genome-Wide Association Study (GWAS) in Mastocytosis Reveal New Gene Polymorphisms Associated with WHO Subgroups.	Systemic mastocytosis	93 European ancestry cases, 5,606 European ancestry controls	NA	6p21.33	MSH5	rs3131382-A	0.03194	9E-7		3.247	[2.75-3.74]	Illumina [281811]	N
607	chr6_dbb_hap3	2993303	2993304	rs3131382	32752121	Nedoszytko B	2020-07-31	Int J Mol Sci	Results from a Genome-Wide Association Study (GWAS) in Mastocytosis Reveal New Gene Polymorphisms Associated with WHO Subgroups.	Mastocytosis	234 European ancestry cases, 5,606 European ancestry controls	NA	6p21.33	MSH5	rs3131382-A	0.03194	3E-8		2.602	[2.25-2.95]	Illumina [281811]	N
607	chr6_dbb_hap3	2993720	2993721	rs409558	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	CLIC1, MSH5-SAPCD1, MSH5, SAPCD1-AS1, RNU6-850P, SAPCD1, VARS, VWA7	rs409558-C	0.1591365	1E-10	(EA, Complement C4)	0.3861	[0.27-0.5] unit increase	Affymetrix [509946]	N
607	chr6_dbb_hap3	2993720	2993721	rs409558	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Systolic blood pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	154,543 European ancestry individuals, 26,183 South Asian ancestry individuals	6p21.33	MSH5, SAPCD1	rs409558-G	0.176	6E-8		0.33	[0.21-0.45] unit decrease	Illumina [247039]	N
607	chr6_dbb_hap3	2993720	2993721	rs409558	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Pulse pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	154,543 European ancestry individuals, 26,183 South Asian ancestry individuals	6p21.33	MSH5, SAPCD1	rs409558-G	0.176	3E-9		0.26	[0.18-0.34] unit decrease	Illumina [247039]	N
607	chr6_dbb_hap3	2994483	2994484	rs28381348	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p21.33	MSH5	rs28381348-C	0.04	5E-6	(EA)	2.81	[1.77-4.47]	Illumina [up to 547389]	N
607	chr6_dbb_hap3	2994926	2994927	rs1144709	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	6p21.33	Intergenic	rs1144709-T	0.2281	3E-10	(MTAG)	0.0134	[0.0093-0.0175] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
607	chr6_dbb_hap3	2994926	2994927	rs1144709	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	6p21.33	Intergenic	rs1144709-C	0.7719	6E-9		0.0135	[0.009-0.018] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
607	chr6_dbb_hap3	2994926	2994927	rs1144709	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	6p21.33	Intergenic	rs1144709-C	0.7725	3E-10		0.017	[0.012-0.022] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
607	chr6_dbb_hap3	2995681	2995682	rs28381350	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	6p21.33	PRRC2A	rs28381350-A	0.1297	5E-9	(S1P d16:1)	0.1104	[0.073-0.147] unit decrease	Illumina [~ 47000000] (imputed)	N
607	chr6_dbb_hap3	2999031	2999032	rs3828922	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	CLIC1, MSH5-SAPCD1, MSH5, SAPCD1-AS1, RNU6-850P, SAPCD1, VARS, VWA7	rs3828922-T	0.1584754	2E-19	(EA, MHC class I polypeptide-related sequence A)	0.5315	[0.42-0.64] unit decrease	Affymetrix [509946]	N
607	chr6_dbb_hap3	3003270	3003271	rs3117572	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MSH5, MSH5-SAPCD1	rs3117572-A	NR	2E-9		0.023199	[0.016-0.031] unit increase	Affymetrix [323123] (imputed)	N
607	chr6_dbb_hap3	3003270	3003271	rs3117572	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	MSH5, MSH5-SAPCD1	rs3117572-A	NR	7E-10		0.0221723	[0.015-0.029] unit decrease	Affymetrix [321169] (imputed)	N
607	chr6_dbb_hap3	3006610	3006611	rs3131379	26316170	Demirci FY	2015-08-28	Arthritis Rheumatol	Identification of a New Susceptibility Locus for Systemic Lupus Erythematosus on Chromosome 12 in Individuals of European Ancestry.	Systemic lupus erythematosus	661 European ancestry cases, 487 European ancestry controls	4,467 European ancestry cases, 9,114 European ancestry controls	6p21.33	MSH5	rs3131379-?	NR	8E-8				Affymetrix [up to 700598]	N
607	chr6_dbb_hap3	3006610	3006611	rs3131379	18204446	Harley JB	2008-01-20	Nat Genet	Genome-wide association scan in women with systemic lupus erythematosus identifies susceptibility variants in ITGAM, PXK, KIAA1542 and other loci.	Systemic lupus erythematosus	720 European ancestry female cases, 2,337 European ancestry female controls	1,846 European ancestry female cases, 1,825 European ancestry female controls	6p21.33	HLA region	rs3131379-A	0.1	2E-52		2.36	[2.11-2.64]	Illumina [317501]	N
607	chr6_dbb_hap3	3008357	3008358	rs3130486	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (anilides)	83,218 European ancestry cases, 96,592 European ancestry controls	NA	6p21.33	MSH5	rs3130486-T	0.265164	1E-13		0.05492751	[0.04-0.069] unit decrease	Affymetrix [7288503] (imputed)	N
607	chr6_dbb_hap3	3010866	3010867	rs3131378	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	6p21.33	MSH5-SAPCD1	rs3131378-G	0.098896646	3E-18		1.1810031	[1.137601617-1.226060343]	Illumina [10439017] (imputed)	N
607	chr6_dbb_hap3	3012269	3012270	rs707939	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MSH5, MSH5-SAPCD1	rs707939-A	NR	4E-10		0.0204551	[0.014-0.027] unit decrease	Affymetrix [323123] (imputed)	N
607	chr6_dbb_hap3	3012269	3012270	rs707939	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.33	ABHD16A, AIF1, APOM, BAG6, C2, C2-AS1, C4A, C4B, C4B_2, C6orf25, C6orf47, C6orf48, CFB, CLIC1, CSNK2B, CYP21A1P, CYP21A2, DDAH2, DXO, EHMT2, GPANK1, HSPA1A, HSPA1B, HSPA1L, LSM2, LY6G5B, LY6G5C, LY6G6C, LY6G6D, LY6G6E, LY6G6F, MIR1236, MIR4646, MIR6832, MSH5, MSH5-SAPCD1, NELFE, NEU1, PRRC2A, SAPCD1, SAPCD1-AS1, SKIV2L, SLC44A4, SNORA38, SNORD48, SNORD52, STK19, TNXA, TNXB, VARS, VWA7, ZBTB12	rs707939-A		4E-12		1.07	[1.05-1.09]	Affymetrix, Illumina [NR]	N
607	chr6_dbb_hap3	3012431	3012432	rs17207524	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	6p21.33	MSH5	rs17207524-T	0.06447	3E-8		1.09	NR	Affymetrix [9154080] (imputed)	N
607	chr6_dbb_hap3	3012431	3012432	rs17207524	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs17207524-G	0.96171875	3E-9	(TGM3, 4471_50_2)	0.3747752	[0.25-0.5] unit increase	Illumina [> 1000000] (imputed)	N
607	chr6_dbb_hap3	3012431	3012432	rs17207524	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs17207524-G	0.96171875	1E-31	(G6B, 7065_1_4)	0.7349115	[0.61-0.86] unit increase	Illumina [> 1000000] (imputed)	N
607	chr6_dbb_hap3	3012431	3012432	rs17207524	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs17207524-G	0.96171875	1E-14	(C4A C4B, 4481_34_2)	0.5052215	[0.38-0.63] unit decrease	Illumina [> 1000000] (imputed)	N
607	chr6_dbb_hap3	3013478	3013479	rs3115672	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Squamous cell lung carcinoma	8,350 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	6p21.33	NR	rs3115672-T	NR	2E-8		1.28	[1.17-1.39]	NR [NR] (imputed)	N
607	chr6_dbb_hap3	3013478	3013479	rs3115672	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Non-small cell lung cancer	27,120 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	6p21.33	NR	rs3115672-T	NR	4E-6		1.15	[1.08-1.22]	NR [NR] (imputed)	N
607	chr6_dbb_hap3	3013478	3013479	rs3115672	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	6p21.33	NR	rs3115672-T	0.113634053654599	4E-15		0.014519162	[0.011-0.018] unit decrease	NR [NR]	N
607	chr6_dbb_hap3	3013478	3013479	rs3115672	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	6p21.33	NR	rs3115672-T	0.113634053654599	6E-15		0.018733539	[0.014-0.023] unit decrease	NR [NR]	N
607	chr6_dbb_hap3	3013478	3013479	rs3115672	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	6p21.33	NR	rs3115672-T	0.113634053654599	5E-14		0.015431175	[0.011-0.019] unit decrease	NR [NR]	N
607	chr6_dbb_hap3	3013478	3013479	rs3115672	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	6p21.33	NR	rs3115672-T	0.113634053654599	2E-15		0.0121121025	[0.0091-0.0151] unit decrease	NR [NR]	N
607	chr6_dbb_hap3	3013570	3013571	rs61748589	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C4A;C4B	5,362 Icelandic ancestry individuals	NA	6p21.33		rs61748589-G	0.01635	1E-9		0.440324	[0.3-0.58] unit decrease	Illumina [7506463] (imputed)	N
607	chr6_dbb_hap3	3013848	3013849	rs2075801	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	CLIC1, MSH5-SAPCD1, MSH5, SAPCD1-AS1, RNU6-850P, SAPCD1, VARS, VWA7	rs2075801-A	0.1582915	8E-15	(EA, gp41 C34 peptide, HIV)	0.4506	[0.34-0.56] unit increase	Affymetrix [509946]	N
608	chr6_dbb_hap3	3014940	3014941	rs707938	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	6p21.33	NR	rs707938-A	0.319085	5E-9		0.039337814	[0.026-0.053] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
608	chr6_dbb_hap3	3014940	3014941	rs707938	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	6p21.33	Intergenic	rs707938-A	0.6802	4E-9		0.018	[0.012-0.024] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
608	chr6_dbb_hap3	3014940	3014941	rs707938	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p21.33	NR	rs707938-?	NR	9E-7		4.905	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
608	chr6_dbb_hap3	3014940	3014941	rs707938	29773799	Horikoshi M	2018-05-17	Nat Commun	Elucidating the genetic architecture of reproductive ageing in the Japanese population.	Menarche (age at onset)	67,029 Japanese ancestry women	73,397 European ancestry women	6p21.33	NR	rs707938-A	0.5873	1E-12	(japanese)	0.189	[0.14-0.24] year increase	Illumina [at least 532488] (imputed)	N
608	chr6_dbb_hap3	3014940	3014941	rs707938	26414677	Day FR	2015-11-01	Nat Genet	Large-scale genomic analyses link reproductive aging to hypothalamic signaling, breast cancer susceptibility and BRCA1-mediated DNA repair.	Menopause (age at onset)	up to 69,626 European ancestry women	NA	6p21.33	MSH5, HLA	rs707938-G	0.32	7E-15		0.17	[0.13-0.21] years decrease	Affymetrix, Illumina [~ 2600000] (imputed)	N
608	chr6_dbb_hap3	3015506	3015507	rs1802127	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.33	NR	rs1802127-T	0.016	3E-6	(women)	0.571389	[0.33-0.81] unit increase	Affymetrix [up to 8900000] (imputed)	N
608	chr6_dbb_hap3	3015506	3015507	rs1802127	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.33	NR	rs1802127-T	0.016	1E-10		0.461925	[0.32-0.6] unit increase	Affymetrix [up to 8900000] (imputed)	N
608	chr6_dbb_hap3	3016332	3016333	rs28399987	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs28399987-?		7E-8		1.06	[1.04-1.09]	Illumina [7645193] (imputed)	N
608	chr6_dbb_hap3	3016332	3016333	rs28399987	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p21.33	MSH5, C6orf26	rs28399987-A	0.02	8E-8	(Turkish)	3.55	[2.17-5.79]	Illumina [up to 547389]	N
608	chr6_dbb_hap3	3019047	3019048	rs3101017	33909500	Moll M	2021-04-28	Am J Physiol Lung Cell Mol Physiol	A Systematic Analysis of Protein-altering Exonic Variants in Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease	up to 31,465 European ancestry cases, up to 203,688 European ancestry controls, up to 1,413 African ancestry cases, up to 6,080 African ancestry controls, up to 287 East Asian ancestry cases, up to 7,484 East Asian ancestry controls, up to 61 Hispanic cases, up to 613 Hispanic controls	NA	6p21.33	VWA7	rs3101017-C	0.13	2E-14		1.12	[1.09 -1.15]	Illumina [at least 109036]	N
608	chr6_dbb_hap3	3019047	3019048	rs3101017	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p21.33	VWA7	rs3101017-C		2E-35		0.041	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
608	chr6_dbb_hap3	3019532	3019534	rs9279411	28067912	Lee JC	2017-01-09	Nat Genet	Genome-wide association study identifies distinct genetic contributions to prognosis and susceptibility in Crohn's disease.	Poor prognosis in Crohn's disease	1,762 Northern European ancestry poor prognosis cases, 972 Northern European ancestry good prognosis controls.		6p21.33	MHC	rs9279411-?	NR	5E-9		1.67	[1.41-2.00]	Affymetrix, Illumina [at least 7000000] (imputed)	N
608	chr6_dbb_hap3	3023989	3023990	rs9461721	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.33		rs9461721-A	0.972	3E-27				Affymetrix [10369434] (imputed)	N
608	chr6_dbb_hap3	3024701	3024702	rs3130490	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	6p21.33	NR	rs3130490-?	NR	5E-10				Affymetrix [~ 8270000] (imputed)	N
608	chr6_dbb_hap3	3024701	3024702	rs3130490	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	6p21.33	NR	rs3130490-?	NR	2E-14				Affymetrix [~ 8270000] (imputed)	N
608	chr6_dbb_hap3	3025079	3025080	rs143029752	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs143029752-?		3E-8		1.78	[1.45-2.19]	Illumina [7645193] (imputed)	N
608	chr6_dbb_hap3	3025265	3025266	rs191306205	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	6p21.33	NR	rs191306205-?	NR	1E-9	(CCL19)	0.542377	[0.37-0.72] unit increase	Illumina [11901634] (imputed)	N
608	chr6_dbb_hap3	3025311	3025312	rs527960948	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on switched memory B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs527960948-C	0.09002	2E-9		0.3289	[0.22-0.44] unit increase	Illumina [18238311] (imputed)	N
608	chr6_dbb_hap3	3025311	3025312	rs527960948	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on IgD- CD38- B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs527960948-C	0.09002	4E-8		0.2922	[0.19-0.4] unit increase	Illumina [18238311] (imputed)	N
608	chr6_dbb_hap3	3026035	3026036	rs805825	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.33		rs805825-G	0.561	1E-14				Affymetrix [10369434] (imputed)	N
608	chr6_dbb_hap3	3026035	3026036	rs805825	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p21.33		rs805825-G	0.561	2E-10				Affymetrix [10369434] (imputed)	N
608	chr6_dbb_hap3	3027240	3027241	rs707930	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	6p21.33	NR	rs707930-T	0.477089	4E-14		0.0517342	[0.038-0.065] unit decrease	Affymetrix [17914406] (imputed)	N
608	chr6_dbb_hap3	3027823	3027824	rs6914412	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Mean platelet volume	21,347 Hispanic or Latin American individuals	NA	6p21.33		rs6914412-T	0.1345	4E-7		0.1401	[0.086-0.194] unit increase	Affymetrix, Illumina [NR] (imputed)	N
608	chr6_dbb_hap3	3027823	3027824	rs6914412	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	6p21.33	VWA7	rs6914412-C	0.0959	9E-11		0.03949006	[0.028-0.051] unit increase	Affymetrix [~ 2500000] (imputed)	N
608	chr6_dbb_hap3	3028171	3028172	rs707928	33563987	Tyrrell J	2021-02-09	Nat Commun	Genetic predictors of participation in optional components of UK Biobank.	Percentage of invited food questionnaires completed	300,639 European ancestry individuals	NA	6p21.33	NR	rs707928-A	0.66	8E-9		0.54	[0.36-0.72] unit decrease	Affymetrix [39302896] (imputed)	N
608	chr6_dbb_hap3	3028171	3028172	rs707928	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling worry	372,869 European ancestry individuals	NA	6p21.33	SAPCD1	rs707928-A	0.346873	2E-8		5.643	unit increase	NR [10847151] (imputed)	N
608	chr6_dbb_hap3	3031045	3031046	rs3130491	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Diastolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	6p21.33	VARS	rs3130491-A	0.3561	4E-14		0.317	[0.23-0.4] mmHg decrease	Affymetrix [NR] (imputed)	N
608	chr6_dbb_hap3	3031099	3031100	rs707927	31932636	Hebbar P	2020-01-13	Sci Rep	Genome-wide association study identifies novel risk variants from RPS6KA1, CADPS, VARS, and DHX58 for fasting plasma glucose in Arab population.	Fasting plasma glucose	1,353 Arab ancestry individuals	1,176 Arab ancestry individuals	6p21.33	VARS, VWA7	rs707927-G	NR	3E-9		5.928	[NR] unit increase	Illumina [632375]	N
608	chr6_dbb_hap3	3032129	3032130	rs909267	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	VARS	rs909267-C	NR	2E-8		0.0322466	[0.021-0.043] unit decrease	Affymetrix [321016] (imputed)	N
608	chr6_dbb_hap3	3034723	3034724	rs915652	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p21.33	VARS	rs915652-A	0.337	4E-32				Illumina [118177]	N
608	chr6_dbb_hap3	3041357	3041358	rs9469053	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on IgD- CD38dim B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs9469053-G	0.18398	1E-10		0.2372	[0.16-0.31] unit increase	Illumina [18238311] (imputed)	N
608	chr6_dbb_hap3	3044512	3044513	rs6899983	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Aspartate aminotransferase levels in low alcohol consumption	8,716 individuals	NA	6p21.33	NR	rs6899983-?	NR	2E-7		0.1467	[0.092-0.202] unit increase	Illumina [~ 7800000] (imputed)	N
608	chr6_dbb_hap3	3046644	3046645	rs9469054	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	6p21.33	VARS	rs9469054-A	0.0247	1E-20		0.1068719	[0.084-0.129] unit increase	Affymetrix [~ 2500000] (imputed)	N
608	chr6_dbb_hap3	3047446	3047447	rs3115670	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	6p21.33	VARS	rs3115670-T	NR	1E-19		0.0626938	[0.049-0.076] unit decrease	Illumina [13520550] (imputed)	N
608	chr6_dbb_hap3	3048424	3048425	rs2607015	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	VARS	rs2607015-C	NR	5E-12		0.0196764	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
608	chr6_dbb_hap3	3048424	3048425	rs2607015	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	VARS	rs2607015-C	NR	3E-8		0.0175576	[0.011-0.024] unit increase	Affymetrix [323858] (imputed)	N
608	chr6_dbb_hap3	3048424	3048425	rs2607015	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	VARS	rs2607015-C	NR	4E-11		0.0188809	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
608	chr6_dbb_hap3	3048425	3048426	rs2753960	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	VARS	rs2753960-T	NR	1E-8		0.0161747	[0.011-0.022] unit decrease	Affymetrix [321016] (imputed)	N
608	chr6_dbb_hap3	3048425	3048426	rs2753960	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	VARS	rs2753960-T	NR	3E-11		0.0207398	[0.015-0.027] unit decrease	Affymetrix [323123] (imputed)	N
608	chr6_dbb_hap3	3048425	3048426	rs2753960	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	VARS	rs2753960-T	NR	3E-14		0.0219625	[0.016-0.028] unit increase	Affymetrix [321169] (imputed)	N
608	chr6_dbb_hap3	3048425	3048426	rs2753960	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	6p21.33	VARS	rs2753960-T	0.4128	2E-14		0.02776258	[0.021-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
608	chr6_dbb_hap3	3051445	3051446	rs1144710	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	6p21.33	LSM2	rs1144710-T	NR	2E-11		0.192529	[0.14-0.25] unit increase	Illumina [at least 950000] (imputed)	N
608	chr6_dbb_hap3	3051445	3051446	rs1144710	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA	6p21.33	NR	rs1144710-?	NR	6E-6		0.0474	[0.027-0.068] unit increase	Illumina [at least 560000] (imputed)	N
608	chr6_dbb_hap3	3051445	3051446	rs1144710	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p21.33	NR	rs1144710-?	NR	2E-10		0.0847	[0.059-0.111] unit increase	Illumina [at least 560000] (imputed)	N
608	chr6_dbb_hap3	3063273	3063274	rs34636308	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	6p21.33	NR	rs34636308-?	NR	5E-14		7.528	NR z score decrease	Illumina [at least 830937] (imputed)	N
608	chr6_dbb_hap3	3063663	3063664	rs2227955	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	C6orf48, HSPA1L, LSM2, HSPA1A, SNORD52, SNORD48, NEU1, SLC44A4	rs2227955-G	0.02306921	4E-9	(EA, gp41 C34 peptide, HIV)	0.8484	[0.57-1.13] unit increase	Affymetrix [509946]	N
608	chr6_dbb_hap3	3063663	3063664	rs2227955	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	C6orf48, HSPA1L, LSM2, HSPA1A, SNORD52, SNORD48, NEU1, SLC44A4	rs2227955-G	0.02306921	4E-13	(EA, Neutrophil collagenase)	1.024	[0.75-1.3] unit increase	Affymetrix [509946]	N
608	chr6_dbb_hap3	3063858	3063859	rs2227956	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CCL19	5,367 Icelandic ancestry individuals	NA	6p21.33		rs2227956-G	0.2402	7E-14		0.167141	[0.12-0.21] unit increase	Illumina [7506463] (imputed)	N
608	chr6_dbb_hap3	3064115	3064116	rs2075799	23028341	Yang X	2012-09-13	PLoS Genet	Genome-wide association study for serum complement C3 and C4 levels in healthy Chinese subjects.	Complement C3 and C4 levels	1,999 Han Chinese ancestry male individuals	1,496 Han Chinese ancestry male individuals	6p21.33	C4	rs2075799-T	0.20	6E-97	(Serum level of C4)	0.17	[0.15-0.19] g/L decrease	Illumina [1940245] (imputed)	N
608	chr6_dbb_hap3	3065825	3065826	rs115333512	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL36A	5,364 Icelandic ancestry individuals	NA	6p21.33		rs115333512-T	0.07275	7E-16		0.295426	[0.22-0.37] unit decrease	Illumina [7506463] (imputed)	N
608	chr6_dbb_hap3	3067543	3067544	rs12213612	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p21.33	NR	rs12213612-?	NR	1E-8		0.1635	[0.11-0.22] unit increase	Illumina [at least 560000] (imputed)	N
608	chr6_dbb_hap3	3069093	3069094	rs1043618	32589924	Bi W	2020-06-23	Am J Hum Genet	A Fast and Accurate Method for Genome-Wide Time-to-Event Data Analysis and Its Application to UK Biobank.	Cataract (time to event)	22,635 British ancestry cases, 260,236 British ancestry controls	NA	6p21.33	HSPA1A46	rs1043618-?	NR	4E-8				NR [~ 24000000] (imputed)	N
608	chr6_dbb_hap3	3070814	3070815	rs506770	34642315	Ferreiro-Iglesias A	2021-10-12	Nat Commun	Germline determinants of humoral immune response to HPV-16 protect against oropharyngeal cancer.	Oropharynx cancer and human papilloma virus 16 negative oropharyngeal cancer	2,359 European ancestry cases, 565 European ancestry controls	NA	6p21.33		rs506770-C	NR	2E-6		1.2434		Illumina [up to 7574753] (imputed)	N
608	chr6_dbb_hap3	3071951	3071952	rs17201192	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.33	HSPA1L	rs17201192-T	0.023301	2E-14		0.058121365	[0.043-0.073] unit increase	Affymetrix [93095623] (imputed)	N
608	chr6_dbb_hap3	3072549	3072550	rs2763977	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HSPA1A	rs2763977-A	NR	2E-10		0.028855	[0.02-0.038] unit increase	Affymetrix [319769] (imputed)	N
608	chr6_dbb_hap3	3072549	3072550	rs2763977	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HSPA1A	rs2763977-A	NR	4E-10		0.0284684	[0.02-0.037] unit increase	Affymetrix [319769] (imputed)	N
608	chr6_dbb_hap3	3074972	3074972	rs139759813	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HSPA1A	rs139759813-GA	NR	2E-9		0.0236752	[0.016-0.031] unit decrease	Affymetrix [127266] (imputed)	N
608	chr6_dbb_hap3	3080178	3080179	rs2763979	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)(bidirectional)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.33		rs2763979-C	NR	2E-14				Affymetrix [7846216] (imputed)	N
608	chr6_dbb_hap3	3080178	3080179	rs2763979	32771030	Tangtanatakul P	2020-08-08	Arthritis Res Ther	Meta-analysis of genome-wide association study identifies FBN2 as a novel locus associated with systemic lupus erythematosus in Thai population.	Systemic lupus erythematosus	487 Thai cases, 1,606 Thai controls	405 Thai cases, 1,590 Thai controls	6p21.33	HSPA1A, HSPA1B	rs2763979-A	0.36	6E-6		1.2994	[NR]	Illumina [421909] (imputed)	N
608	chr6_dbb_hap3	3084662	3084663	rs3115674	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.33	NR	rs3115674-T	0.983	1E-8		0.652	[0.51-0.8]	Illumina [11270530] (imputed)	N
608	chr6_dbb_hap3	3084939	3084940	rs34278010	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs34278010-G	0.977	3E-44				Affymetrix [10369434] (imputed)	N
608	chr6_dbb_hap3	3086454	3086455	rs2471980	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Prostate cancer	7,438 White British ancestry cases, 118,206 White British ancestry controls	NA	6p21.33		rs2471980-?	NR	2E-6		0.915623	[0.88-0.95]	NR [680312]	N
608	chr6_dbb_hap3	3088051	3088052	rs4711279	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs4711279-C	0.824607758652095	1E-6	(IGP41)	0.1858	[0.11-0.26] unit decrease	Illumina [~ 2500000] (imputed)	N
608	chr6_dbb_hap3	3088051	3088052	rs4711279	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs4711279-C	0.824401248864668	4E-6	(IGP1)	0.1774	[0.1-0.25] unit decrease	Illumina [~ 2500000] (imputed)	N
608	chr6_dbb_hap3	3088051	3088052	rs4711279	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs4711279-C	0.823257144469526	3E-7	(IGP19)	0.1964	[0.12-0.27] unit decrease	Illumina [~ 2500000] (imputed)	N
608	chr6_dbb_hap3	3088127	3088128	rs9368699	20041166	Fellay J	2009-12-24	PLoS Genet	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	6p21.33	SNORD52	rs9368699-?	NR	5E-8	(progression)			Illumina [NR]	N
608	chr6_dbb_hap3	3088649	3088650	rs763298451	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	C6orf48, SNORD48	rs763298451-CT	NR	1E-12		0.0394762	[0.029-0.05] unit increase	Affymetrix [323123] (imputed)	N
608	chr6_dbb_hap3	3088715	3088716	rs17201248	26151496	Chen PL	2015-07-07	Nat Commun	Genetic determinants of antithyroid drug-induced agranulocytosis by human leukocyte antigen genotyping and genome-wide association study.	Thionamide-induced agranulocytosis in Graves' disease	21 East Asian ancestry cases with agranulocytosis, 662 East Asian ancestry cases without agranulocytosis	21 East Asian ancestry cases with agranulocytosis, 546 East Asian ancestry cases without agranulocytosis	6p21.33	HLA	rs17201248-T	0.092	3E-7	(trend)	3.48	[2.09-5.81] (allelic)	Affymetrix [522980]	N
608	chr6_dbb_hap3	3090314	3090315	rs11968400	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	6p21.33	C6orf48	rs11968400-?	NR	6E-12		0.0655868	[0.047-0.084] unit increase	Illumina [4804024] (imputed)	N
608	chr6_dbb_hap3	3091185	3091186	rs115487693	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	6p21.33	C6orf48	rs115487693-C	0.0445	4E-21		0.08313974	[0.066-0.1] unit decrease	Affymetrix [~ 2500000] (imputed)	N
608	chr6_dbb_hap3	3094021	3094022	rs599707	29904099	Kottyan LC	2018-06-08	Genes Immun	Genetic variants at the 16p13 locus confer risk for eosinophilic esophagitis.	Eosinophilic esophagitis	1,210 European ancestry cases, 3,734 European ancestry controls	NA	6p21.33	C6orf48, HSPA1B	rs599707-?	0.886	3E-9		1.6920472		Illumina [79405]	N
608	chr6_dbb_hap3	3094313	3094314	rs117217736	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.33	NR	rs117217736-T	0.991	1E-12		0.479	[0.28-0.68]	Illumina [11270530] (imputed)	N
608	chr6_dbb_hap3	3095702	3095705	rs74887990	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	6p21.33	C6orf48	rs74887990-T	0.0231	6E-16		0.063891105	[0.048-0.079] unit increase	Affymetrix [93095623] (imputed)	N
608	chr6_dbb_hap3	3097148	3097149	rs3130479	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	C6orf48	rs3130479-A	NR	2E-10		0.0294674	[0.02-0.038] unit increase	Affymetrix [321169] (imputed)	N
608	chr6_dbb_hap3	3097623	3097624	rs9267576	31375628	Tengvall K	2019-08-02	Proc Natl Acad Sci U S A	Molecular mimicry between Anoctamin 2 and Epstein-Barr virus nuclear antigen 1 associates with multiple sclerosis risk.	Anti-anoctamin 2 antibody levels	11,936 European ancestry individuals	NA	6p21.33	NR	rs9267576-A	NR	2E-8		0.07	[0.041-0.099] unit increase	Illumina [615763]	N
608	chr6_dbb_hap3	3098557	3098558	rs144527861	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	6p21.33	PRRC2A	rs144527861-A	0.1297	2E-9	(S1P d16:1)	0.115	[0.078-0.152] unit decrease	Illumina [~ 47000000] (imputed)	N
608	chr6_dbb_hap3	3101644	3101645	rs28732162	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p21.33	NR	rs28732162-?	NR	7E-17		0.1769	[0.14-0.22] unit increase	Illumina [at least 560000] (imputed)	N
608	chr6_dbb_hap3	3103693	3103694	rs9267578	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	NEU1	rs9267578-T	NR	6E-10		0.025611	[0.018-0.034] unit decrease	Affymetrix [319769] (imputed)	N
608	chr6_dbb_hap3	3106228	3106229	rs2736429	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling nervous	373,121 European ancestry individuals	NA	6p21.33	NR	rs2736429-A	0.384863	6E-12		6.89	z score increase	NR [10847151] (imputed)	N
608	chr6_dbb_hap3	3106767	3106768	rs370025470	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	6p21.33	NEU1	rs370025470-C	0.030144	3E-16		0.056601908	[0.043-0.07] unit increase	Affymetrix [93095623] (imputed)	N
608	chr6_dbb_hap3	3107524	3107525	rs35745547	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	NEU1	rs35745547-A	NR	1E-9		0.0190063	[0.013-0.025] unit increase	Affymetrix [321169] (imputed)	N
608	chr6_dbb_hap3	3108200	3108201	rs9267647	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	6p21.33	NEU1	rs9267647-T	0.132946	4E-11		0.022519508	[0.016-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
608	chr6_dbb_hap3	3108841	3108842	rs115310850	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.33	NR	rs115310850-A	0.01	2E-11		0.616842	[0.44-0.8] unit increase	Affymetrix [up to 8900000] (imputed)	N
608	chr6_dbb_hap3	3110497	3110498	rs9267650	27539887	Chahal HS	2016-08-19	Nat Commun	Genome-wide association study identifies 14 novel risk alleles associated with basal cell carcinoma.	Basal cell carcinoma	12.945 European ancestry cases, 274,252 European ancestry controls	4,242 European ancestry cases, 12,802 European ancestry controls	6p21.33	NEU1	rs9267650-T	0.05	1E-8		1.17	[NR]	Illumina [at least 560000] (imputed)	N
608	chr6_dbb_hap3	3112290	3112291	rs622076	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C2	5,363 Icelandic ancestry individuals	NA	6p21.33		rs622076-A	0.1077	2E-23		0.300008	[0.24-0.36] unit increase	Illumina [7506463] (imputed)	N
608	chr6_dbb_hap3	3112290	3112291	rs622076	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	6p21.33	NEU1	rs622076-A	0.1361	3E-14	(discovery)	0.0035	[0.0025-0.0045] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
608	chr6_dbb_hap3	3112871	3112872	rs13118	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6p21.33	SLC44A4	rs13118-?	NR	5E-6	(TAG 52:6)	0.3502205	[0.2-0.5] unit increase	Affymetrix [at least 2500000] (imputed)	N
608	chr6_dbb_hap3	3120743	3120744	rs74290525	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	NA	6p21.33	SLC44A4	rs74290525-G		1E-12	(conditional)	2.06	[NR]	Illumina [> 644674] (imputed)	N
608	chr6_dbb_hap3	3120745	3120746	rs693906	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	6p21.33		rs693906-C	NR	2E-33		0.029	[0.024-0.034] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
608	chr6_dbb_hap3	3120745	3120746	rs693906	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Scarlet fever	6,812 European ancestry cases, 113,837 European ancestry controls	NA	6p21.33	NR	rs693906-?	NR	7E-6		0.1149	[0.065-0.164] unit decrease	Illumina [at least 560000] (imputed)	N
608	chr6_dbb_hap3	3122023	3122024	rs542418	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.33	NR	rs542418-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
608	chr6_dbb_hap3	3122023	3122024	rs542418	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	6p21.33	NR	rs542418-?	NR	3E-6		0.0552	[0.032-0.078] unit increase	Illumina [at least 560000] (imputed)	N
608	chr6_dbb_hap3	3122408	3122409	rs521977	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	SLC44A4	rs521977-T	NR	9E-19		0.0294152	[0.023-0.036] unit decrease	Affymetrix [323858] (imputed)	N
608	chr6_dbb_hap3	3122408	3122409	rs521977	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	SLC44A4	rs521977-T	NR	3E-16		0.0271844	[0.021-0.034] unit decrease	Affymetrix [127266] (imputed)	N
608	chr6_dbb_hap3	3122408	3122409	rs521977	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Perceived unattractiveness to mosquitoes	16,576 European ancestry individuals	NA	6p21.33	SLC44A4	rs521977-T	0.276	4E-7		0.131107	[0.08-0.182] unit increase	Illumina [7433384] (imputed)	N
608	chr6_dbb_hap3	3122408	3122409	rs521977	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	6p21.33	SLC44A4	rs521977-T	NR	9E-7		0.0192183	[0.012-0.027] unit increase	Illumina [13519193] (imputed)	N
608	chr6_dbb_hap3	3122408	3122409	rs521977	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	6p21.33	SLC44A4	rs521977-T	NR	4E-20		0.0380858	[0.03-0.046] unit increase	Illumina [13520550] (imputed)	N
608	chr6_dbb_hap3	3122647	3122648	rs11966200	20526339	Quan C	2010-06-06	Nat Genet	Genome-wide association study for vitiligo identifies susceptibility loci at 6q27 and the MHC.	Vitiligo	1,117 Han Chinese ancestry cases, 1,429 Han Chinese ancestry controls	6,623 East Asian ancestry cases, 10,740 East Asian ancestry controls	6p21.33	HLA-C, HLA-B	rs11966200-A	0.06	1E-48		1.9	[1.74-2.07]	Illumina [493909]	N
608	chr6_dbb_hap3	3122858	3122859	rs660550	31837886	Kennedy OJ	2019-12-02	Am J Kidney Dis	Coffee Consumption and Kidney Function: A Mendelian Randomization Study.	Coffee consumption (cups per day)	227,666 British ancestry individuals	NA	6p21.33	SLC44A4	rs660550-A	0.525	8E-9		0.034	NR cups per day decrease	NR [NR]	N
608	chr6_dbb_hap3	3123544	3123545	rs577272	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs577272-G	NR	6E-9		0.0164512	[0.011-0.022] unit decrease	Affymetrix [321114] (imputed)	N
608	chr6_dbb_hap3	3123544	3123545	rs577272	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs577272-G	NR	1E-21		0.0272058	[0.022-0.033] unit decrease	Affymetrix [321169] (imputed)	N
608	chr6_dbb_hap3	3123544	3123545	rs577272	27286809	Ligthart S	2016-06-10	BMC Genomics	Bivariate genome-wide association study identifies novel pleiotropic loci for lipids and inflammation.	C-reactive protein levels or total cholesterol levels (pleiotropy)	65,000 individuals (C-reactive protein), 100,184 individuals (total cholesterol)	NA	6p21.33	SLC44A4	rs577272-A	NR	2E-8				NR [2501549] (imputed)	N
608	chr6_dbb_hap3	3124071	3124072	rs644774	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs644774-C	NR	4E-22		0.0271946	[0.022-0.033] unit decrease	Affymetrix [319769] (imputed)	N
608	chr6_dbb_hap3	3124071	3124072	rs644774	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs644774-C	NR	6E-21		0.0263821	[0.021-0.032] unit decrease	Affymetrix [319769] (imputed)	N
608	chr6_dbb_hap3	3124071	3124072	rs644774	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs644774-C	NR	2E-13		0.0206859	[0.015-0.026] unit increase	Affymetrix [321016] (imputed)	N
608	chr6_dbb_hap3	3124294	3124295	rs494620	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs494620-A	NR	1E-13		0.0214886	[0.016-0.027] unit increase	Affymetrix [319769] (imputed)	N
608	chr6_dbb_hap3	3124294	3124295	rs494620	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	SLC44A4	rs494620-A	NR	4E-10		0.0201809	[0.014-0.026] unit increase	Affymetrix [323858] (imputed)	N
608	chr6_dbb_hap3	3124294	3124295	rs494620	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs494620-A	NR	6E-13		0.0208264	[0.015-0.027] unit increase	Affymetrix [319769] (imputed)	N
608	chr6_dbb_hap3	3124294	3124295	rs494620	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	SLC44A4	rs494620-A	NR	6E-9		0.0187173	[0.012-0.025] unit increase	Affymetrix [127266] (imputed)	N
608	chr6_dbb_hap3	3124294	3124295	rs494620	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs494620-A	NR	7E-16		0.0236685	[0.018-0.029] unit increase	Affymetrix [321169] (imputed)	N
608	chr6_dbb_hap3	3124294	3124295	rs494620	19448619	Stolk L	2009-05-15	Nat Genet	Loci at chromosomes 13, 19 and 20 influence age at natural menopause.	Menopause (age at onset)	2,979 European ancestry female individuals	2,560 European ancestry female individuals	6p21.33	NR	rs494620-?	NR	5E-7		0.3	[0.18-0.42] years increase	Illumina [315418]	N
608	chr6_dbb_hap3	3125363	3125364	rs3130482	31879980	German CA	2019-12-26	Genet Epidemiol	Ordered multinomial regression for genetic association analysis of ordinal phenotypes at Biobank scale.	Hypertension	30,822 British ancestry normal blood pressure individuals, 25,242 British ancestry elevated blood pressure individuals, 50,461 British ancestry stage 1 hypertension individuals, 75,286 British ancestry stage 2 hypertension individuals, 3,754 British ancestry hypertension crisis individuals	NA	6p21.33	SLC44A4	rs3130482-?	NR	1E-10		0.03993774	NR unit increase	Affymetrix [464137]	N
608	chr6_dbb_hap3	3125602	3125603	rs2763981	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs2763981-T	NR	6E-27		0.0318493	[0.026-0.038] unit decrease	Affymetrix [319769] (imputed)	N
608	chr6_dbb_hap3	3125602	3125603	rs2763981	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs2763981-T	NR	3E-25		0.0308309	[0.025-0.037] unit decrease	Affymetrix [319769] (imputed)	N
608	chr6_dbb_hap3	3125602	3125603	rs2763981	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs2763981-T	NR	3E-8		0.0165328	[0.011-0.022] unit decrease	Affymetrix [321114] (imputed)	N
608	chr6_dbb_hap3	3125602	3125603	rs2763981	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	SLC44A4	rs2763981-T	NR	2E-27		0.0349933	[0.029-0.041] unit increase	Affymetrix [323123] (imputed)	N
608	chr6_dbb_hap3	3125602	3125603	rs2763981	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs2763981-T	NR	1E-24		0.0307655	[0.025-0.037] unit decrease	Affymetrix [321169] (imputed)	N
608	chr6_dbb_hap3	3125602	3125603	rs2763981	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	6p21.33	SLC44A4	rs2763981-A	NR	8E-14				Affymetrix, Illumina [NR] (imputed)	N
608	chr6_dbb_hap3	3125602	3125603	rs2763981	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	6p21.33	SLC44A4	rs2763981-A	NR	1E-18	(EA)			Affymetrix, Illumina [NR] (imputed)	N
608	chr6_dbb_hap3	3125602	3125603	rs2763981	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	6p21.33	SLC44A4	rs2763981-A	NR	3E-19	(EA)			Affymetrix, Illumina [NR] (imputed)	N
608	chr6_dbb_hap3	3125602	3125603	rs2763981	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	6p21.33	SLC44A4	rs2763981-A	NR	1E-14				Affymetrix, Illumina [NR] (imputed)	N
608	chr6_dbb_hap3	3125602	3125603	rs2763981	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	6p21.33	SLC44A4	rs2763981-A	NR	6E-14	(EA)	0.021	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
608	chr6_dbb_hap3	3125602	3125603	rs2763981	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	6p21.33	SLC44A4	rs2763981-A	NR	1E-10		0.015	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
608	chr6_dbb_hap3	3125602	3125603	rs2763981	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	6p21.33	SLC44A4	rs2763981-A	NR	4E-6		0.012	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
608	chr6_dbb_hap3	3125602	3125603	rs2763981	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	6p21.33	SLC44A4	rs2763981-A	NR	2E-8	(EA)	0.021	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
608	chr6_dbb_hap3	3125602	3125603	rs2763981	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	6p21.33	SLC44A4	rs2763981-A	NR	5E-11				Affymetrix, Illumina [NR] (imputed)	N
608	chr6_dbb_hap3	3125602	3125603	rs2763981	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	6p21.33	SLC44A4	rs2763981-A	NR	3E-11	(EA)			Affymetrix, Illumina [NR] (imputed)	N
608	chr6_dbb_hap3	3125602	3125603	rs2763981	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	6p21.33	SLC44A4	rs2763981-A	NR	7E-12				Affymetrix, Illumina [NR] (imputed)	N
608	chr6_dbb_hap3	3125602	3125603	rs2763981	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	6p21.33	SLC44A4	rs2763981-A	NR	4E-12	(EA)			Affymetrix, Illumina [NR] (imputed)	N
608	chr6_dbb_hap3	3125602	3125603	rs2763981	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	6p21.33	SLC44A4	rs2763981-A	NR	6E-9	(EA)	1.145	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
608	chr6_dbb_hap3	3125602	3125603	rs2763981	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	6p21.33	SLC44A4	rs2763981-A	NR	3E-9		1.01	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
608	chr6_dbb_hap3	3125602	3125603	rs2763981	30670697	Kilpelainen TO	2019-01-22	Nat Commun	Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity.	Triglycerides x physical activity interaction (2df test)	7,294 African American inactive individuals, 12,832 African American active individuals, 1,352 Asian ancestry inactive individuals, 3,049 Asian ancestry active individuals, 20,622 European ancestry inactive individuals, 51,480 European ancestry active individuals, 2,166 Hispanic or Latin American inactive individuals, 3,486 Hispanic or Latin American active individuals	580 African American inactive individuals, 1,540 African American active individuals, 1,217 South African Black ancestry inactive individuals, 389 South African Black ancestry active individuals, 765 East Asian ancestry inactive individuals, 1,814 East Asian ancestry active individuals,  724 South Asian ancestry inactive individuals, 1,424 South Asian ancestry active individuals, 32,456 European ancestry inactive individuals, 49,510 European ancestry active individuals, 2,619 Hispanic inactive individuals, 8,803 Hispanic active individuals	6p21.33	NR	rs2763981-A	0.7045	4E-14	(EA)			Affymetrix, Illumina [at least 2500000] (imputed)	N
608	chr6_dbb_hap3	3125602	3125603	rs2763981	28334935	Raffield LM	2017-05-15	Hum Mol Genet	Genome-wide association study of iron traits and relation to diabetes in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL): potential genomic intersection of iron and glucose regulation?	Iron status biomarkers (total iron binding capacity)	12,586 Hispanic/Latino individuals	NA	6p21.33	SLC44A4	rs2763981-T	NR	8E-7		0.124	[0.075-0.173] unit decrease	Illumina [27700000] (imputed)	N
608	chr6_dbb_hap3	3125996	3125997	rs9267653	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs9267653-T	NR	9E-9		0.0178718	[0.012-0.024] unit decrease	Affymetrix [319769] (imputed)	N
608	chr6_dbb_hap3	3125996	3125997	rs9267653	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs9267653-T	NR	1E-8		0.0176946	[0.012-0.024] unit decrease	Affymetrix [319769] (imputed)	N
608	chr6_dbb_hap3	3125996	3125997	rs9267653	26423011	Wain LV	2015-09-27	Lancet Respir Med	Novel insights into the genetics of smoking behaviour, lung function, and chronic obstructive pulmonary disease (UK BiLEVE): a genetic association study in UK Biobank.	Lung function (low FEV1 vs high FEV1)	19,493 European ancestry individuals with low FEV1 measurements, 9,808 European ancestry individuals with high FEV1 measurements	NA	6p21.33	SLC44A4	rs9267653-C	NR	4E-9		0.124	[0.083-0.165] unit increase	Affymetrix [28509962] (imputed)	N
608	chr6_dbb_hap3	3126036	3126037	rs553108	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls	NA	6p21.33	SLC44A4	rs553108-A	0.418103	2E-10		0.0516698	[0.036-0.068] unit decrease	Affymetrix [7288503] (imputed)	N
608	chr6_dbb_hap3	3126036	3126037	rs553108	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Ease of getting up in the morning	385,949 European ancestry individuals	NA	6p21.33	NR	rs553108-A	0.4159	3E-8		0.0097	[0.0062-0.0132] unit increase	Affymetrix, Illumina [10862568] (imputed)	N
608	chr6_dbb_hap3	3126058	3126059	rs501942	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	6p21.33	NR	rs501942-T	0.09	3E-19		1.26	[1.2-1.32]	Illumina [8468885] (imputed)	N
608	chr6_dbb_hap3	3126058	3126059	rs501942	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in ever smokers	23,223 European ancestry cases,  16,964 European ancestry controls	NA	6p21.33	SLC44A4	rs501942-T	0.101035865	3E-14		1.2034894	[1.147434239-1.262282973]	Illumina [10439017] (imputed)	N
608	chr6_dbb_hap3	3126058	3126059	rs501942	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	6p21.33	SLC44A4	rs501942-T	0.098642093	8E-19		1.1851386	[1.141406179-1.230546538]	Illumina [10439017] (imputed)	N
608	chr6_dbb_hap3	3126590	3126591	rs9267654	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs9267654-A	NR	2E-12		0.0251845	[0.018-0.032] unit decrease	Affymetrix [319769] (imputed)	N
608	chr6_dbb_hap3	3126590	3126591	rs9267654	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs9267654-A	NR	3E-12		0.0249577	[0.018-0.032] unit decrease	Affymetrix [319769] (imputed)	N
608	chr6_dbb_hap3	3126590	3126591	rs9267654	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs9267654-A	NR	4E-10		0.0223343	[0.015-0.029] unit increase	Affymetrix [321016] (imputed)	N
608	chr6_dbb_hap3	3127471	3127472	rs573098	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs573098-A	NR	2E-20		0.0279205	[0.022-0.034] unit increase	Affymetrix [321016] (imputed)	N
608	chr6_dbb_hap3	3127471	3127472	rs573098	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p21.33	SLC44A4	rs573098-A	NR	1E-9		0.0200634	[0.014-0.027] unit decrease	Affymetrix [323858] (imputed)	N
608	chr6_dbb_hap3	3127471	3127472	rs573098	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	6p21.33	NR	rs573098-T	0.679422	2E-12		0.0509102	[0.037-0.065] unit decrease	Affymetrix [17914406] (imputed)	N
608	chr6_dbb_hap3	3128179	3128180	rs12661281	25629512	Cheng CY	2015-01-28	Nat Commun	New loci and coding variants confer risk for age-related macular degeneration in East Asians.	Exudative age-related macular degeneration	2,119 East Asian ancestry cases, 5,691 East Asian ancestry controls	4,226 East Asian ancestry cases, 10,289 East Asian ancestry controls	6p21.33	SLC44A4	rs12661281-?	NR	1E-11		1.27	[NR]	Illumina [4471719] (imputed)	N
608	chr6_dbb_hap3	3129505	3129506	rs2736428	20421499	Levy D	2010-04-26	Proc Natl Acad Sci U S A	Genome-wide association identifies OBFC1 as a locus involved in human leukocyte telomere biology.	Telomere length	3,417 European ancestry individuals	1,893 African American and European ancestry individuals, 2,876 European ancestry individuals	6p21.33	SLC44A4	rs2736428-T	NR	3E-6		0.05	[0.03-0.07] kb increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
608	chr6_dbb_hap3	3131566	3131567	rs9267658	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6p21.33		rs9267658-T	0.1428	5E-12		0.0138	[0.0099-0.0177] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
608	chr6_dbb_hap3	3131654	3131655	rs114400264	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		SLC44A4	rs114400264-?	NR	5E-9	(male)	2.81252	[NR] unit decrease	Affymetrix [NR] (imputed)	N
608	chr6_dbb_hap3	3131815	3131816	rs9267659	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	6p21.33	SLC44A4	rs9267659-A	0.2004	4E-11		0.079	[0.056-0.102] unit increase	NR [7784415] (imputed)	N
608	chr6_dbb_hap3	3132481	3132482	rs114951054	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		EHMT2-AS1	rs114951054-?	NR	2E-9	(male)	2.96479	[NR] unit decrease	Affymetrix [NR] (imputed)	N
608	chr6_dbb_hap3	3132593	3132594	rs605203	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	6p21.33	NR	rs605203-A	0.62	4E-43		0.025	[0.021-0.029] unit increase	Affymetrix [2446094] (imputed)	N
608	chr6_dbb_hap3	3132593	3132594	rs605203	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	6p21.33	NR	rs605203-A	0.62	5E-8				Affymetrix [2446094] (imputed)	N
608	chr6_dbb_hap3	3132999	3133000	rs116369005	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	6p21.33	SLC44A4, EHMT2-AS1	rs116369005-C	0.021645	3E-10		0.052029066	[0.036-0.068] unit increase	Affymetrix [93095623] (imputed)	N
608	chr6_dbb_hap3	3133217	3133218	rs41267086	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C4A;C4B	5,353 Icelandic ancestry individuals	NA	6p21.33		rs41267086-A	0.09194	2E-44		0.435404	[0.37-0.5] unit decrease	Illumina [7506463] (imputed)	N
608	chr6_dbb_hap3	3133217	3133218	rs41267086	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.33	NR	rs41267086-?	NR	6E-12				Affymetrix [~ 8270000] (imputed)	N
608	chr6_dbb_hap3	3133801	3133802	rs589428	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI in non-smokers	75,379 European ancestry women, 45,811 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	6p21.33	EHMT2	rs589428-G	0.651	2E-10	(EA)	0.016	[0.01-0.022] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
608	chr6_dbb_hap3	3133801	3133802	rs589428	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	6p21.33	EHMT2	rs589428-G	0.65	1E-17	(EA)	0.024	[0.018-0.03] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
608	chr6_dbb_hap3	3134021	3134022	rs41267090	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p21.33	EHMT2	rs41267090-T	0.05	8E-7	(EA)	2.82	[1.84-4.33]	Illumina [up to 547389]	N
608	chr6_dbb_hap3	3135889	3135890	rs74434374	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NCR3	5,364 Icelandic ancestry individuals	NA	6p21.33		rs74434374-A	0.07046	4E-24		0.354873	[0.29-0.42] unit decrease	Illumina [7506463] (imputed)	N
608	chr6_dbb_hap3	3136815	3136816	rs652888	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	EHMT2	rs652888-G	NR	3E-10		0.0207108	[0.014-0.027] unit decrease	Affymetrix [319769] (imputed)	N
608	chr6_dbb_hap3	3136815	3136816	rs652888	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	EHMT2	rs652888-G	NR	1E-9		0.0200442	[0.014-0.027] unit decrease	Affymetrix [319769] (imputed)	N
608	chr6_dbb_hap3	3136815	3136816	rs652888	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	EHMT2	rs652888-G	NR	1E-9		0.02033	[0.014-0.027] unit decrease	Affymetrix [321169] (imputed)	N
608	chr6_dbb_hap3	3136815	3136816	rs652888	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p21.33	EHMT2	rs652888-G	NR	2E-8		0.0206131	[0.013-0.028] unit decrease	Affymetrix [323858] (imputed)	N
608	chr6_dbb_hap3	3136815	3136816	rs652888	27157822	Hallberg P	2016-05-03	Lancet Diabetes Endocrinol	Genetic variants associated with antithyroid drug-induced agranulocytosis: a genome-wide association study in a European population.	Anti-thyroid drug induced agranulocytosis	38 European ancestry cases, 1 case, 5,170 European ancestry controls	NA	6p21.33	EHMT2	rs652888-?	NR	2E-11		4.73	[3.00-7.44]	Illumina [9380034] (imputed)	N
608	chr6_dbb_hap3	3136815	3136816	rs652888	25802187	Jiang DK	2015-04-28	Hepatology	Genetic variants in five novel loci including CFB and CD40 predispose to chronic hepatitis B.	Chronic hepatitis B infection	2,514 Chinese ancestry cases, 1,130 Chinese ancestry controls	6,600 Chinese ancestry cases, 8,127 Chinese ancestry controls	6p21.33	EHMT2	rs652888-G	0.24	1E-6		1.14	[1.08-1.19]	Illumina [3680900] (imputed)	N
608	chr6_dbb_hap3	3136815	3136816	rs652888	23760081	Kim YJ	2013-06-10	Hum Mol Genet	A genome-wide association study identified new variants associated with the risk of chronic hepatitis B.	Chronic hepatitis B infection	400 Korean ancestry cases, 1,000 Korean ancestry controls	971 Korean ancestry cases, 1,938 Korean ancestry controls	6p21.33	EHMT2	rs652888-?	NR	7E-13		1.38	[1.22-1.57]	Illumina [719265]	N
608	chr6_dbb_hap3	3136815	3136816	rs652888	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.33	EHMT2	rs652888-C	0.2021	3E-46		2.71	[NR]	Illumina [242824]	N
608	chr6_dbb_hap3	3137050	3137051	rs2844458	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	EHMT2	rs2844458-A	NR	5E-9		0.0178304	[0.012-0.024] unit increase	Affymetrix [319769] (imputed)	N
608	chr6_dbb_hap3	3137050	3137051	rs2844458	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	EHMT2	rs2844458-A	NR	3E-8		0.0170038	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
608	chr6_dbb_hap3	3141651	3141652	rs486416	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	6p21.33		rs486416-A	0.6376	6E-9		0.013	[0.0091-0.0169] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
608	chr6_dbb_hap3	3141651	3141652	rs486416	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	6p21.33	EHMT2	rs486416-G	0.34730000000000005	1E-9		1.0203034		Affymetrix [11880941] (imputed)	N
608	chr6_dbb_hap3	3144111	3144112	rs34929649	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	EHMT2	rs34929649-C	NR	3E-13		0.0219327	[0.016-0.028] unit increase	Affymetrix [321169] (imputed)	N
609	chr6_dbb_hap3	3146413	3146414	rs115699278	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p21.33	EHMT2	rs115699278-T	0.011501	2E-9		0.06559309	[0.044-0.087] unit decrease	Affymetrix [93095623] (imputed)	N
609	chr6_dbb_hap3	3148457	3148458	rs115062572	33841421	Li J	2021-03-25	Front Immunol	Variants at the MHC Region Associate With Susceptibility to <i>Clostridioides difficile</i> Infection: A Genome-Wide Association Study Using Comprehensive Electronic Health Records.	Clostridioides difficle infection in antibiotics-users	587 European ancestry cases, 3,166 European ancestry controls	NA	6p21.33	ZBTB12	rs115062572-T	0.022	1E-6		2.29	[1.7-2.98]	Illumina [64973696] (imputed)	N
609	chr6_dbb_hap3	3148457	3148458	rs115062572	33841421	Li J	2021-03-25	Front Immunol	Variants at the MHC Region Associate With Susceptibility to <i>Clostridioides difficile</i> Infection: A Genome-Wide Association Study Using Comprehensive Electronic Health Records.	Clostridioides difficle infection	1,160 European ancestry cases, 14,144 European ancestry controls	NA	6p21.33	ZBTB12, EHMT2, C2, CYP21A2	rs115062572-T	0.0203	4E-6		1.74	[1.41-2.08]	Illumina [64973696] (imputed)	N
609	chr6_dbb_hap3	3148457	3148458	rs115062572	32641083	Hillary RF	2020-07-08	Genome Med	Multi-method genome- and epigenome-wide studies of inflammatory protein levels in healthy older adults.	Tumor necrosis factor beta levels	982 Scottish ancestry individuals	NA	6p21.33	NR	rs115062572-T	0.01979	5E-10		1.23251	[0.84-1.62] unit decrease	Illumina [7903493] (imputed)	N
609	chr6_dbb_hap3	3148457	3148458	rs115062572	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.33		rs115062572-T	0.02316600000000002	2E-8		1.0846895	[1.05-1.11]	Affymetrix, Illumina [9851866] (imputed)	N
609	chr6_dbb_hap3	3148749	3148750	rs17207748	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		EHMT2	rs17207748-?	NR	6E-9	(male)	2.35655	[NR] unit decrease	Affymetrix [NR] (imputed)	N
609	chr6_dbb_hap3	3149014	3149015	rs2243873	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	6p21.33	SLC44A4, EHMT2, STK19, CYP21A2, TNXB	rs2243873-?	NR	4E-11				Affymetrix, Illumina [18800000] (imputed)	N
609	chr6_dbb_hap3	3149014	3149015	rs2243873	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	6p21.33	SLC44A4, EHMT2, STK19, CYP21A2, TNXB	rs2243873-?	NR	3E-14	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
609	chr6_dbb_hap3	3149014	3149015	rs2243873	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	6p21.33	SLC44A4, EHMT2, STK19, CYP21A2, TNXB	rs2243873-?	NR	6E-10				Affymetrix, Illumina [18800000] (imputed)	N
609	chr6_dbb_hap3	3149014	3149015	rs2243873	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	6p21.33	SLC44A4, EHMT2, STK19, CYP21A2, TNXB	rs2243873-?		7E-13	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
609	chr6_dbb_hap3	3149014	3149015	rs2243873	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	6p21.33	SLC44A4, EHMT2, STK19, CYP21A2, TNXB	rs2243873-?	NR	4E-10				Affymetrix, Illumina [18800000] (imputed)	N
609	chr6_dbb_hap3	3149014	3149015	rs2243873	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	6p21.33	SLC44A4, EHMT2, STK19, CYP21A2, TNXB	rs2243873-?	NR	1E-10	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
609	chr6_dbb_hap3	3149014	3149015	rs2243873	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	6p21.33	SLC44A4, EHMT2, STK19, CYP21A2, TNXB	rs2243873-?	NR	6E-9				Affymetrix, Illumina [18800000] (imputed)	N
609	chr6_dbb_hap3	3149014	3149015	rs2243873	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	6p21.33	SLC44A4, EHMT2, STK19, CYP21A2, TNXB	rs2243873-?	NR	3E-9	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
609	chr6_dbb_hap3	3150119	3150120	rs115884658	32534018	Liu X	2020-06-10	Brain Behav Immun	Genetic factors underlying the bidirectional relationship between autoimmune and mental disorders - findings from a Danish population-based study.	Autoimmune traits	1,383 Danish ancestry cases, 62,656 Danish ancestry controls	NA	6p21.33	NR	rs115884658-A	0.047	2E-15		1.83	[1.6-2.1]	NR [7721839] (imputed)	N
609	chr6_dbb_hap3	3150119	3150120	rs115884658	29358691	Bonas-Guarch S	2018-01-22	Nat Commun	Re-analysis of public genetic data reveals a rare X-chromosomal variant associated with type 2 diabetes.	Type 2 diabetes	7,522 European ancestry cases, 50,446 European ancestry controls	35,789 African-American, East Asian, South Asian, European or Hispanic cases, 56,738 African-American, East Asian, South Asian, European or Hispanic controls	6p21.33	EHMT2	rs115884658-A	NR	3E-10		1.21	[1.14-1.29]	Affymetrix, Illumina [1918233] (imputed)	N
609	chr6_dbb_hap3	3150128	3150129	rs7887	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein EEF2K	5,361 Icelandic ancestry individuals	NA	6p21.33		rs7887-T	0.3571	6E-30		0.225707	[0.19-0.26] unit decrease	Illumina [7506463] (imputed)	N
609	chr6_dbb_hap3	3150128	3150129	rs7887	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C4A;C4B	5,362 Icelandic ancestry individuals	NA	6p21.33		rs7887-T	0.3571	8E-212		0.572662	[0.54-0.61] unit decrease	Illumina [7506463] (imputed)	N
609	chr6_dbb_hap3	3150255	3150256	rs2844456	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p21.33	NR	rs2844456-C	0.06	7E-13		0.82	[0.78-0.87]	Affymetrix [9886854] (imputed)	N
609	chr6_dbb_hap3	3150255	3150256	rs2844456	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p21.33	NR	rs2844456-C	0.06	9E-13			[NR]	Affymetrix [9886854] (imputed)	N
609	chr6_dbb_hap3	3150255	3150256	rs2844456	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in non-current smokers	16,488 European ancestry cases, 169,688 European ancestry controls	NA	6p21.33	NR	rs2844456-C	0.06	9E-13		0.82	[0.78-0.87]	Affymetrix [9886854] (imputed)	N
609	chr6_dbb_hap3	3150255	3150256	rs2844456	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	6p21.33	NR	rs2844456-?		4E-16	(AGER)	0.6356	[NR] unit decrease	Illumina [NR]	N
609	chr6_dbb_hap3	3151714	3151715	rs118097312	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Red blood cell count	108,794 Japanese ancestry individuals	NA	6p21.33	NR	rs118097312-?	NR	1E-10		0.05623	[0.039-0.073] unit decrease novel	Illumina [6108953] (imputed)	N
609	chr6_dbb_hap3	3152428	3152428	rs750497811	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.33	C2	rs750497811-GA	NR	7E-11		0.0409958	[0.029-0.053] unit increase	Affymetrix [321114] (imputed)	N
609	chr6_dbb_hap3	3152834	3152835	rs9267663	22566634	Benjamin DJ	2012-05-07	Proc Natl Acad Sci U S A	The genetic architecture of economic and political preferences.	Economic and political preferences (environmentalism)	9,617 European ancestry individuals	NA	6p21.33	EHMT2	rs9267663-T	NR	6E-6		0.29	[0.16-0.42] unit decrease	Illumina [628922]	N
609	chr6_dbb_hap3	3154346	3154347	rs114508013	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs114508013-G	0.9640625	5E-41	(CFB, 4129_72_1)	0.89926857	[0.77-1.03] unit increase	Illumina [> 1000000] (imputed)	N
609	chr6_dbb_hap3	3154346	3154347	rs114508013	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs114508013-G	0.9640625	4E-14	(FTMT, 8048_9_3)	0.51218635	[0.38-0.64] unit decrease	Illumina [> 1000000] (imputed)	N
609	chr6_dbb_hap3	3154346	3154347	rs114508013	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs114508013-G	0.9640625	3E-16	(DEFB119, 13455_10_3)	0.5455914	[0.42-0.68] unit decrease	Illumina [> 1000000] (imputed)	N
609	chr6_dbb_hap3	3154346	3154347	rs114508013	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs114508013-G	0.9640625	3E-11	(MICA, 2730_58_2)	0.45406085	[0.32-0.59] unit increase	Illumina [> 1000000] (imputed)	N
609	chr6_dbb_hap3	3154346	3154347	rs114508013	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs114508013-G	0.9640625	2E-129	(TNXB, 5698_60_3)	1.5771569	[1.46-1.7] unit increase	Illumina [> 1000000] (imputed)	N
609	chr6_dbb_hap3	3154346	3154347	rs114508013	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs114508013-G	0.9640625	1E-66	(C2, 3186_2_2)	1.1762669	[1.05-1.31] unit increase	Illumina [> 1000000] (imputed)	N
609	chr6_dbb_hap3	3154346	3154347	rs114508013	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs114508013-G	0.9640625	1E-60	(ISG15, 14148_2_3)	1.1050375	[0.98-1.23] unit increase	Illumina [> 1000000] (imputed)	N
609	chr6_dbb_hap3	3154703	3154704	rs45462992	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6p21.33		rs45462992-?	NR	4E-6		0.86602	[0.8-0.93]	NR [685523]	N
609	chr6_dbb_hap3	3155254	3155255	rs2844455	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	C2, ZBTB12	rs2844455-T	NR	2E-11		0.0245279	[0.017-0.032] unit increase	Affymetrix [319769] (imputed)	N
609	chr6_dbb_hap3	3155254	3155255	rs2844455	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	C2, ZBTB12	rs2844455-T	NR	5E-11		0.0238761	[0.017-0.031] unit increase	Affymetrix [319769] (imputed)	N
609	chr6_dbb_hap3	3155254	3155255	rs2844455	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	C2, ZBTB12	rs2844455-T	NR	2E-11		0.0246589	[0.017-0.032] unit increase	Affymetrix [321169] (imputed)	N
609	chr6_dbb_hap3	3155907	3155908	rs558702	24871463	Armstrong DL	2014-05-29	Genes Immun	GWAS identifies novel SLE susceptibility genes and explains the association of the HLA region.	Systemic lupus erythematosus	725 European ancestry cases, 2,438 European ancestry controls	NA	6p21.33	C2	rs558702-A	0.1	8E-21		2.276	[2.097-2.47]	Illumina [NR]	N
609	chr6_dbb_hap3	3156437	3156438	rs9267665	21764829	Png E	2011-07-15	Hum Mol Genet	A genome-wide association study of hepatitis B vaccine response in an Indonesian population reveals multiple independent risk variants in the HLA region.	Hepatitis B vaccine response	1,683 Indonesian ancestry individuals	1,931 Indonesian ancestry individuals	6p21.33	HLA	rs9267665-?	NR	1E-17		2.05	[1.64-2.57]	Illumina [455508]	N
609	chr6_dbb_hap3	3161294	3161295	rs586346	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Coffee consumption	335,909 European ancestry individuals	39,924 European ancestry individuals	6p21.33	C2	rs586346-T	0.3648	7E-10		0.0095	[0.0066-0.0124] unit increase	Affymetrix [~ 7740000] (imputed)	N
609	chr6_dbb_hap3	3161624	3161625	rs1313996	32339537	Roberts V	2020-04-24	J Invest Dermatol	Genome wide association study identifies genetic associations with perceived age.	Youthful appearance (self-reported)	423,992 European ancestry individuals	NA	6p21.33	C2	rs1313996-T	0.363603	4E-11		0.970678	NR	Affymetrix [~ 9600000] (imputed)	N
609	chr6_dbb_hap3	3161624	3161625	rs1313996	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p21.33	NR	rs1313996-?	NR	7E-17		0.1086	[0.083-0.134] unit increase	Illumina [at least 560000] (imputed)	N
609	chr6_dbb_hap3	3163040	3163041	rs116508221	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		C2	rs116508221-?	NR	8E-10	(male)	3.05228	[NR] unit decrease	Affymetrix [NR] (imputed)	N
609	chr6_dbb_hap3	3164015	3164016	rs519417	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p21.33	NR	rs519417-?	NR	1E-6		4.887	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
609	chr6_dbb_hap3	3164015	3164016	rs519417	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	6p21.33	ZBTB12, CFB	rs519417-G	NR	7E-11		0.207694	[0.15-0.27] unit increase	Illumina [at least 950000] (imputed)	N
609	chr6_dbb_hap3	3164015	3164016	rs519417	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p21.33	NR	rs519417-?	NR	3E-9		0.0882	[0.059-0.117] unit increase	Illumina [at least 560000] (imputed)	N
609	chr6_dbb_hap3	3164077	3164078	rs622871	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	6p21.33	NR	rs622871-?	NR	7E-18	(male)	0.32361	[0.25-0.4] unit decrease	Affymetrix [7794483] (imputed)	N
609	chr6_dbb_hap3	3164077	3164078	rs622871	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	6p21.33	NR	rs622871-?	NR	6E-19	(female)	0.23136	[0.18-0.28] unit decrease	Affymetrix [7794483] (imputed)	N
609	chr6_dbb_hap3	3164077	3164078	rs622871	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	6p21.33	NR	rs622871-?	NR	5E-32		0.28011	[0.23-0.33] unit decrease	Affymetrix [7794483] (imputed)	N
609	chr6_dbb_hap3	3164077	3164078	rs622871	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA	6p21.33	NR	rs622871-?	NR	2E-6		0.0384	[0.023-0.054] unit increase	Illumina [at least 560000] (imputed)	N
609	chr6_dbb_hap3	3164077	3164078	rs622871	28762467	Wadelius M	2017-08-01	Clin Pharmacol Ther	Sulfasalazine-Induced Agranulocytosis Is Associated With the Human Leukocyte Antigen Locus.	Sulfasalazine-induced agranulocytosis	36 European ancestry cases, 5,170 European ancestry untreated controls	NA	6p21.33	C2	rs622871-?	NR	7E-7		3.29	[2.06-5.27]	Illumina [9380034] (imputed)	N
609	chr6_dbb_hap3	3164077	3164078	rs622871	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.33	C2	rs622871-G	NR	4E-9	(women)	0.0303318	[0.02-0.04] unit decrease	Illumina [13520550] (imputed)	N
609	chr6_dbb_hap3	3164077	3164078	rs622871	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.33	C2	rs622871-G	NR	1E-10		0.0232703	[0.016-0.03] unit decrease	Illumina [13520550] (imputed)	N
609	chr6_dbb_hap3	3164740	3164741	rs3128761	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)(bidirectional)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.33		rs3128761-A	NR	4E-7				Affymetrix [7846216] (imputed)	N
609	chr6_dbb_hap3	3166392	3166393	rs561312719	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs561312719-C	0.067	6E-73	(Ubiquitin carboxyl-terminal hydrolase 25, USP25.9215.117.3)	0.94	[0.84-1.04] unit increase	Affymetrix [10572788] (imputed)	N
609	chr6_dbb_hap3	3166894	3166895	rs532086	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	C2	rs532086-C	NR	2E-14		0.0323897	[0.024-0.041] unit decrease	Affymetrix [323858] (imputed)	N
609	chr6_dbb_hap3	3166894	3166895	rs532086	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	C2	rs532086-C	NR	1E-12		0.0302037	[0.022-0.039] unit decrease	Affymetrix [127266] (imputed)	N
609	chr6_dbb_hap3	3166894	3166895	rs532086	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	C2	rs532086-C	NR	9E-10		0.0255355	[0.017-0.034] unit increase	Affymetrix [323123] (imputed)	N
609	chr6_dbb_hap3	3166894	3166895	rs532086	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	6p21.33	C2	rs532086-T	0.859	3E-6		0.0016	[0.00062-0.00258] unit increase	Affymetrix [NR] (imputed)	N
609	chr6_dbb_hap3	3167316	3167317	rs685031	30104761	Zhou W	2018-08-13	Nat Genet	Efficiently controlling for case-control imbalance and sample relatedness in large-scale genetic association studies.	Coronary artery disease	31,355 European ancestry cases, 377,103 European ancestry controls	NA	6p21.33	C2	rs685031-A	0.389	9E-9				Affymetrix [28000000] (imputed)	N
609	chr6_dbb_hap3	3167316	3167317	rs685031	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	6p21.33	C2	rs685031-A	0.646	5E-10		0.043	[0.029-0.057] unit increase	Affymetrix [7947838] (imputed)	N
609	chr6_dbb_hap3	3167609	3167610	rs2844452	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	C2	rs2844452-G	NR	6E-12		0.0195783	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
609	chr6_dbb_hap3	3167609	3167610	rs2844452	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	C2	rs2844452-G	NR	6E-11		0.0206929	[0.015-0.027] unit increase	Affymetrix [323858] (imputed)	N
609	chr6_dbb_hap3	3167609	3167610	rs2844452	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	C2	rs2844452-G	NR	4E-11		0.0187691	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
609	chr6_dbb_hap3	3167609	3167610	rs2844452	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	C2	rs2844452-G	NR	2E-9		0.0190129	[0.013-0.025] unit increase	Affymetrix [127266] (imputed)	N
609	chr6_dbb_hap3	3167726	3167726	rs111329206	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	C2	rs111329206-TGGGCGGATCATGA	NR	1E-15		0.0257236	[0.019-0.032] unit decrease	Affymetrix [323123] (imputed)	N
609	chr6_dbb_hap3	3169264	3169265	rs9267673	29185836	Chen MH	2017-11-29	Platelets	Exome-chip meta-analysis identifies association between variation in ANKRD26 and platelet aggregation.	Platelet aggregation	3,664 European ancestry individuals, 549 Old Order Amish (founder/genetic isolate) individuals	1,184 European ancestry individuals, 613 African American individuals	6p21.33	C2	rs9267673-T	0.114	7E-6	(collagen 1)	0.173	[0.097-0.249] unit decrease	Illumina [129094]	N
609	chr6_dbb_hap3	3169264	3169265	rs9267673	21105107	Clifford RJ	2010-12-01	Hepatology	Genetic variations at loci involved in the immune response are risk factors for hepatocellular carcinoma.	Hepatocellular carcinoma	180 Korean ancestry cases, 271 Korean ancestry controls	206 Korean ancestry cases, 416 East Asian ancestry controls,	6p21.33	C2	rs9267673-?	0.08	2E-6		1.97	[1.47-2.64]	Affymetrix [658897]	N
609	chr6_dbb_hap3	3169542	3169543	rs644045	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	6p21.33	C2	rs644045-A	0.3528	3E-13		0.0413	[0.03-0.052] unit decrease	Affymetrix [at least 7947838] (imputed)	N
609	chr6_dbb_hap3	3169542	3169543	rs644045	28881265	Sobalska-Kwapis M	2017-09-01	Eur J Obstet Gynecol Reprod Biol	New variants near RHOJ and C2, HLA-DRA region and susceptibility to endometriosis in the Polish population-The genome-wide association study.	Endometriosis	171 European ancestry cases, 2,934 European ancestry controls	NA	6p21.33	C2, LOC101929163, HLA-DRA	rs644045-T	0.2853	2E-8		1.955	[1.541-2.48]	Illumina [274400]	N
609	chr6_dbb_hap3	3170408	3170409	rs3130682	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	6p21.33	C2	rs3130682-T	NR	1E-16		0.0630215	[0.048-0.078] unit decrease	Illumina [13520550] (imputed)	N
609	chr6_dbb_hap3	3171515	3171516	rs3128759	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	153,512 East Asian ancestry individuals	NA	6p21.33		rs3128759-T	0.915106	7E-17		0.0465594	[0.036-0.058] unit increase	Illumina [13479135] (imputed)	N
609	chr6_dbb_hap3	3172845	3172846	rs115009784	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL15	5,365 Icelandic ancestry individuals	NA	6p21.33		rs115009784-A	0.04844	1E-13		0.324224	[0.24-0.41] unit decrease	Illumina [7506463] (imputed)	N
609	chr6_dbb_hap3	3173953	3173954	rs3130683	28714975	Nelson CP	2017-07-17	Nat Genet	Association analyses based on false discovery rate implicate new loci for coronary artery disease.	Coronary artery disease (myocardial infarction, percutaneous transluminal coronary angioplasty, coronary artery bypass grafting, angina or chromic ischemic heart disease)	18,467 European and unknown ancestry cases, 45,264 European and unknown ancestry controls	57,347 European and unknown ancestry cases, 219,521 European and unknown ancestry controls	6p21.33	C2	rs3130683-T	0.86	3E-8		1.08	[1.05-1.11]	Affymetrix [9149595] (imputed)	N
609	chr6_dbb_hap3	3178070	3178071	rs497309	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in diabetes	70,762 European ancestry individuals, 20,967 African American individuals	NA	6p21.33	C2	rs497309-A	0.902	5E-12		1.009	[0.72-1.3] unit increase	Affymetrix [NR] (imputed)	N
609	chr6_dbb_hap3	3178227	3178228	rs9267677	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	6p21.33	Intergenic	rs9267677-T	0.8962	7E-16	(MTAG)	0.0218	[0.017-0.027] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
609	chr6_dbb_hap3	3178227	3178228	rs9267677	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6p21.33		rs9267677-T	0.9029	4E-14		0.018	[0.013-0.023] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
609	chr6_dbb_hap3	3178227	3178228	rs9267677	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6p21.33	Intergenic	rs9267677-T	0.9029	8E-18	(MTAG)	0.0191	[0.015-0.023] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
609	chr6_dbb_hap3	3178227	3178228	rs9267677	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	6p21.33	Intergenic	rs9267677-T	0.9038	2E-9	(MTAG)	0.0233	[0.016-0.031] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
609	chr6_dbb_hap3	3179530	3179531	rs2734335	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	C2	rs2734335-A	NR	2E-8		0.0157901	[0.01-0.021] unit decrease	Affymetrix [321016] (imputed)	N
609	chr6_dbb_hap3	3179941	3179942	rs556679	33893285	Guindo-Martinez M	2021-04-23	Nat Commun	The impact of non-additive genetic associations on age-related complex diseases.	Age-related macular degeneration	3,685 European ancestry cases, 52,952 European ancestry controls	NA	6p21.33		rs556679-T	0.1113519	5E-21		0.66		Affymetrix [15377238] (imputed)	N
609	chr6_dbb_hap3	3181559	3181560	rs7746553	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	6p21.33	C2	rs7746553-C	0.848517	5E-8		0.0160902	[0.01-0.022] unit increase	NR [16516521] (imputed)	N
609	chr6_dbb_hap3	3182805	3182806	rs9283893	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	SKIV2L, C2, XXbac-BPG116M5.17, NELFE, MIR1236, DXO, STK19	rs9283893-A	0.0446339	1E-32	(Neutrophil collagenase)	1.199	[1.01-1.39] unit increase	Affymetrix [509946]	N
609	chr6_dbb_hap3	3186340	3186341	rs184265581	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	6p21.33	NR	rs184265581-C	0.012356999999999951	6E-27		0.132322	[0.11-0.16] unit increase	Affymetrix [16580851] (imputed)	N
609	chr6_dbb_hap3	3189390	3189391	rs9332739	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CFB	5,365 Icelandic ancestry individuals	NA	6p21.33		rs9332739-C	0.0495	8E-121		0.960939	[0.88-1.04] unit decrease	Illumina [7506463] (imputed)	N
609	chr6_dbb_hap3	3189390	3189391	rs9332739	22705344	Sobrin L	2012-06-15	Ophthalmology	Heritability and genome-wide association study to assess genetic differences between advanced age-related macular degeneration subtypes.	Age-related macular degeneration (geographic atrophy)	819 European ancestry geographic atrophy cases, 4,134 European ancestry controls	NA	6p21.33	C2	rs9332739-?	0.955	1E-6		2.63	[1.79-3.85]	Affymetrix, Illumina [6036699] (imputed)	N
609	chr6_dbb_hap3	3189390	3189391	rs9332739	22705344	Sobrin L	2012-06-15	Ophthalmology	Heritability and genome-wide association study to assess genetic differences between advanced age-related macular degeneration subtypes.	Age-related macular degeneration (choroidal neovascularisation)	1,775 European ancestry choroidal neovascularization cases, 4,134 European ancestry controls	4,515 European and unknown ancestry choroidal neovascularization cases, 15,240 European and unknown ancestry controls	6p21.33	C2	rs9332739-?	0.955	2E-8		2.08	[1.61-2.7]	Affymetrix, Illumina [6036699] (imputed)	N
609	chr6_dbb_hap3	3189390	3189391	rs9332739	21665990	Yu Y	2011-06-10	Hum Mol Genet	Common variants near FRK/COL10A1 and VEGFA are associated with advanced age-related macular degeneration.	Age-related macular degeneration	2,594 European ancestry cases, 4,134 European ancestry controls	5,640 European ancestry cases, 52,174 European ancestry controls	6p21.33	C2	rs9332739-?	0.96	2E-23		2.17	[NR]	Affymetrix [6036699] (imputed)	N
609	chr6_dbb_hap3	3190717	3190718	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ZNF276	5,363 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	6E-17		0.263299	[0.2-0.32] unit increase	Illumina [7506463] (imputed)	N
609	chr6_dbb_hap3	3190717	3190718	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ZAP70	5,357 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	2E-20		0.28156	[0.22-0.34] unit increase	Illumina [7506463] (imputed)	N
609	chr6_dbb_hap3	3190717	3190718	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein WIF1	5,349 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	4E-12		0.207313	[0.15-0.27] unit increase	Illumina [7506463] (imputed)	N
609	chr6_dbb_hap3	3190717	3190718	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein UTS2	5,348 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	2E-13		0.213721	[0.16-0.27] unit increase	Illumina [7506463] (imputed)	N
609	chr6_dbb_hap3	3190717	3190718	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TPM2	5,353 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	6E-19		0.271948	[0.21-0.33] unit increase	Illumina [7506463] (imputed)	N
609	chr6_dbb_hap3	3190717	3190718	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TMCC3	5,355 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	6E-19		0.272099	[0.21-0.33] unit increase	Illumina [7506463] (imputed)	N
609	chr6_dbb_hap3	3190717	3190718	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SYNCRIP	5,354 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	3E-16		0.244214	[0.19-0.3] unit increase	Illumina [7506463] (imputed)	N
609	chr6_dbb_hap3	3190717	3190718	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RPS10	5,348 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	8E-14		0.223731	[0.16-0.28] unit increase	Illumina [7506463] (imputed)	N
609	chr6_dbb_hap3	3190717	3190718	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RNF43	5,340 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	2E-12		0.20687	[0.15-0.26] unit increase	Illumina [7506463] (imputed)	N
609	chr6_dbb_hap3	3190717	3190718	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RGS8	5,356 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	5E-18		0.263545	[0.2-0.32] unit increase	Illumina [7506463] (imputed)	N
609	chr6_dbb_hap3	3190717	3190718	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RAD51	5,354 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	2E-17		0.254863	[0.2-0.31] unit increase	Illumina [7506463] (imputed)	N
609	chr6_dbb_hap3	3190717	3190718	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RAB5C	5,347 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	8E-15		0.22726	[0.17-0.28] unit increase	Illumina [7506463] (imputed)	N
609	chr6_dbb_hap3	3190717	3190718	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RAB17	5,352 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	2E-16		0.244122	[0.19-0.3] unit increase	Illumina [7506463] (imputed)	N
609	chr6_dbb_hap3	3190717	3190718	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PTPN1	5,343 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	2E-12		0.199884	[0.14-0.26] unit increase	Illumina [7506463] (imputed)	N
609	chr6_dbb_hap3	3190717	3190718	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein POLR1C	5,352 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	4E-15		0.236472	[0.18-0.3] unit increase	Illumina [7506463] (imputed)	N
609	chr6_dbb_hap3	3190717	3190718	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PIK3CG	5,349 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	3E-18		0.254662	[0.2-0.31] unit increase	Illumina [7506463] (imputed)	N
609	chr6_dbb_hap3	3190717	3190718	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PCDHB4	5,352 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	1E-14		0.230172	[0.17-0.29] unit increase	Illumina [7506463] (imputed)	N
609	chr6_dbb_hap3	3190717	3190718	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PCDHB14	5,352 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	9E-17		0.252266	[0.19-0.31] unit increase	Illumina [7506463] (imputed)	N
609	chr6_dbb_hap3	3190717	3190718	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NRXN3	5,346 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	3E-14		0.227034	[0.17-0.29] unit increase	Illumina [7506463] (imputed)	N
609	chr6_dbb_hap3	3190717	3190718	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NDUFB4	5,364 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	9E-14		0.235159	[0.17-0.3] unit increase	Illumina [7506463] (imputed)	N
609	chr6_dbb_hap3	3190717	3190718	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MST1R	5,341 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	7E-16		0.227077	[0.17-0.28] unit increase	Illumina [7506463] (imputed)	N
609	chr6_dbb_hap3	3190717	3190718	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MOCS3	5,351 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	8E-15		0.232526	[0.17-0.29] unit increase	Illumina [7506463] (imputed)	N
609	chr6_dbb_hap3	3190717	3190718	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein KLK6	5,348 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	1E-15		0.225461	[0.17-0.28] unit increase	Illumina [7506463] (imputed)	N
609	chr6_dbb_hap3	3190717	3190718	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein KLK12	5,359 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	1E-19		0.280976	[0.22-0.34] unit increase	Illumina [7506463] (imputed)	N
609	chr6_dbb_hap3	3190717	3190718	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL18R1	5,351 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	5E-12		0.21193	[0.15-0.27] unit increase	Illumina [7506463] (imputed)	N
609	chr6_dbb_hap3	3190717	3190718	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL10RA	5,353 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	1E-13		0.230011	[0.17-0.29] unit increase	Illumina [7506463] (imputed)	N
609	chr6_dbb_hap3	3190717	3190718	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IGFL3	5,350 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	5E-15		0.237003	[0.18-0.3] unit increase	Illumina [7506463] (imputed)	N
609	chr6_dbb_hap3	3190717	3190718	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GBP6	5,348 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	5E-12		0.206328	[0.15-0.26] unit increase	Illumina [7506463] (imputed)	N
609	chr6_dbb_hap3	3190717	3190718	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FRZB	5,350 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	5E-13		0.207917	[0.15-0.26] unit increase	Illumina [7506463] (imputed)	N
609	chr6_dbb_hap3	3190717	3190718	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FCER1A	5,348 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	1E-19		0.272221	[0.21-0.33] unit increase	Illumina [7506463] (imputed)	N
609	chr6_dbb_hap3	3190717	3190718	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DSG1	5,349 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	4E-16		0.242273	[0.18-0.3] unit increase	Illumina [7506463] (imputed)	N
609	chr6_dbb_hap3	3190717	3190718	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DCUN1D5	5,344 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	2E-13		0.212735	[0.16-0.27] unit increase	Illumina [7506463] (imputed)	N
609	chr6_dbb_hap3	3190717	3190718	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CRABP1	5,340 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	4E-13		0.209239	[0.15-0.27] unit increase	Illumina [7506463] (imputed)	N
609	chr6_dbb_hap3	3190717	3190718	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CLEC12B	5,357 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	4E-18		0.267882	[0.21-0.33] unit increase	Illumina [7506463] (imputed)	N
609	chr6_dbb_hap3	3190717	3190718	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CDK5;CDK5R1	5,339 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	2E-15		0.225529	[0.17-0.28] unit increase	Illumina [7506463] (imputed)	N
609	chr6_dbb_hap3	3190717	3190718	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CCL1	5,354 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	1E-15		0.242251	[0.18-0.3] unit increase	Illumina [7506463] (imputed)	N
609	chr6_dbb_hap3	3190717	3190718	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CA4	5,356 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	2E-13		0.225651	[0.17-0.29] unit increase	Illumina [7506463] (imputed)	N
609	chr6_dbb_hap3	3190717	3190718	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C2orf40	5,353 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	3E-12		0.217148	[0.16-0.28] unit increase	Illumina [7506463] (imputed)	N
609	chr6_dbb_hap3	3190717	3190718	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein BCL2L10	5,355 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	9E-14		0.231319	[0.17-0.29] unit increase	Illumina [7506463] (imputed)	N
609	chr6_dbb_hap3	3190717	3190718	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein BCL2L1	5,350 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	1E-17		0.257737	[0.2-0.32] unit increase	Illumina [7506463] (imputed)	N
609	chr6_dbb_hap3	3190717	3190718	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein AZGP1	5,362 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	1E-19		0.281057	[0.22-0.34] unit increase	Illumina [7506463] (imputed)	N
609	chr6_dbb_hap3	3190717	3190718	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ANXA10	5,345 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	6E-13		0.218401	[0.16-0.28] unit increase	Illumina [7506463] (imputed)	N
609	chr6_dbb_hap3	3190717	3190718	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein AKT3	5,346 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	2E-14		0.217044	[0.16-0.27] unit increase	Illumina [7506463] (imputed)	N
609	chr6_dbb_hap3	3190717	3190718	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein AHSA1	5,351 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	2E-15		0.242628	[0.18-0.3] unit increase	Illumina [7506463] (imputed)	N
609	chr6_dbb_hap3	3190717	3190718	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ADGRE5	5,359 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	3E-18		0.271861	[0.21-0.33] unit increase	Illumina [7506463] (imputed)	N
609	chr6_dbb_hap3	3190717	3190718	rs1042663	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs1042663-A	0.095	5E-18	(ER membrane protein complex subunit 4, EMC4.13516.46.3)	0.36	[0.28-0.44] unit decrease	Affymetrix [10572788] (imputed)	N
609	chr6_dbb_hap3	3191597	3191598	rs9380272	20385819	Chen W	2010-04-12	Proc Natl Acad Sci U S A	Genetic variants near TIMP3 and high-density lipoprotein-associated loci influence susceptibility to age-related macular degeneration.	Age-related macular degeneration	2,157 European ancestry cases, 1,150 European ancestry controls	7,892 European ancestry cases, 5,998 European ancestry controls, 678 Japanese ancestry cases, 336 Japanese ancestry controls	6p21.33	CFB, C2	rs9380272-A	0.012	2E-8		4.31	[2.76-6.87]	Illumina [~ 2500000] (imputed)	N
609	chr6_dbb_hap3	3192413	3192414	rs78593564	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PSMD11	5,350 Icelandic ancestry individuals	NA	6p21.33		rs78593564-A	0.05083	8E-12		0.281426	[0.2-0.36] unit decrease	Illumina [7506463] (imputed)	N
609	chr6_dbb_hap3	3192413	3192414	rs78593564	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL36A	5,364 Icelandic ancestry individuals	NA	6p21.33		rs78593564-A	0.05083	2E-64		0.72184	[0.64-0.81] unit decrease	Illumina [7506463] (imputed)	N
609	chr6_dbb_hap3	3192413	3192414	rs78593564	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL21	5,363 Icelandic ancestry individuals	NA	6p21.33		rs78593564-A	0.05083	3E-50		0.636403	[0.55-0.72] unit decrease	Illumina [7506463] (imputed)	N
609	chr6_dbb_hap3	3192413	3192414	rs78593564	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	6p21.33	HLA region	rs78593564-?	NR	3E-8	(EA)			Affymetrix, Illumina [10537485] (imputed)	N
609	chr6_dbb_hap3	3192413	3192414	rs78593564	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	6p21.33	HLA region	rs78593564-?	NR	1E-8				Affymetrix, Illumina [10537485] (imputed)	N
609	chr6_dbb_hap3	3193422	3193423	rs2293751	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	C2, CFB	rs2293751-A	NR	2E-15		0.0227001	[0.017-0.028] unit increase	Affymetrix [321169] (imputed)	N
609	chr6_dbb_hap3	3193422	3193423	rs2293751	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.33	C2, C2-AS1, CFB, DXO, EHMT2, MIR1236, NELFE, NEU1, SKIV2L, SLC44A4, STK19, ZBTB12	rs2293751-A		3E-8		1.06	[1.04-1.08]	Affymetrix, Illumina [NR]	N
609	chr6_dbb_hap3	3194346	3194347	rs497239	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ZAP70	5,359 Icelandic ancestry individuals	NA	6p21.33		rs497239-C	0.09998	3E-12		0.217124	[0.16-0.28] unit increase	Illumina [7506463] (imputed)	N
609	chr6_dbb_hap3	3194346	3194347	rs497239	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein KLRC3	5,354 Icelandic ancestry individuals	NA	6p21.33		rs497239-C	0.09998	1E-32		0.360834	[0.3-0.42] unit increase	Illumina [7506463] (imputed)	N
609	chr6_dbb_hap3	3194346	3194347	rs497239	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ENTPD3	5,332 Icelandic ancestry individuals	NA	6p21.33		rs497239-C	0.09998	3E-13		0.205425	[0.15-0.26] unit increase	Illumina [7506463] (imputed)	N
609	chr6_dbb_hap3	3196525	3196526	rs547154	32843070	Winkler TW	2020-08-26	BMC Med Genomics	Genome-wide association meta-analysis for early age-related macular degeneration highlights novel loci and insights for advanced disease.	Early age-related macular degeneration	14,034 European ancestry cases, 91,214 European ancestry controls	NA	6p21.33	C2	rs547154-G	0.91	1E-18		1.24	[1.19-1.29]	Affymetrix, Illumina [11702853] (imputed)	N
609	chr6_dbb_hap3	3199611	3199612	rs4151667	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	CFB	rs4151667-A	0.042	6E-53	(Complement factor B, CFB.4129.72.1)	0.91	[0.79-1.03] unit decrease	Affymetrix [10572788] (imputed)	N
609	chr6_dbb_hap3	3199766	3199767	rs12614	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CFB	5,365 Icelandic ancestry individuals	NA	6p21.33		rs12614-T	0.07594	2E-11		0.239951	[0.17-0.31] unit decrease	Illumina [7506463] (imputed)	N
609	chr6_dbb_hap3	3199766	3199767	rs12614	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	CFB	rs12614-T	0.087	7E-25	(Gremlin-1, GREM1.4449.67.3)	0.44	[0.36-0.52] unit increase	Affymetrix [10572788] (imputed)	N
609	chr6_dbb_hap3	3199766	3199767	rs12614	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	CFB	rs12614-T	0.087	1E-283	(Neutrophil collagenase, MMP8.2954.56.2)	1.33	[1.25-1.41] unit increase	Affymetrix [10572788] (imputed)	N
609	chr6_dbb_hap3	3199766	3199767	rs12614	25802187	Jiang DK	2015-04-28	Hepatology	Genetic variants in five novel loci including CFB and CD40 predispose to chronic hepatitis B.	Chronic hepatitis B infection	2,514 Chinese ancestry cases, 1,130 Chinese ancestry controls	6,600 Chinese ancestry cases, 8,127 Chinese ancestry controls	6p21.33	CFB	rs12614-T	0.92	1E-34		1.89	[1.69-2.08]	Illumina [3680900] (imputed)	N
609	chr6_dbb_hap3	3199767	3199768	rs641153	32492067	Ruffieux H	2020-06-03	PLoS Comput Biol	A fully joint Bayesian quantitative trait locus mapping of human protein abundance in plasma.	Protein quantitative trait loci	394 European ancestry individuals	548 European ancestry individuals	6p21.33	NR	rs641153-?	NR	4E-12	(Factor B)			Illumina [~ 4000000] (imputed)	N
609	chr6_dbb_hap3	3199767	3199768	rs641153	22705344	Sobrin L	2012-06-15	Ophthalmology	Heritability and genome-wide association study to assess genetic differences between advanced age-related macular degeneration subtypes.	Age-related macular degeneration (geographic atrophy)	819 European ancestry geographic atrophy cases, 4,134 European ancestry controls	NA	6p21.33	CFB	rs641153-?	0.899	2E-9		2.13	[1.69-2.7]	Affymetrix, Illumina [6036699] (imputed)	N
609	chr6_dbb_hap3	3199767	3199768	rs641153	22705344	Sobrin L	2012-06-15	Ophthalmology	Heritability and genome-wide association study to assess genetic differences between advanced age-related macular degeneration subtypes.	Age-related macular degeneration (choroidal neovascularisation)	1,775 European ancestry choroidal neovascularization cases, 4,134 European ancestry controls	4,515 European and unknown ancestry choroidal neovascularization cases, 15,240 European and unknown ancestry controls	6p21.33	CFB	rs641153-?	0.899	1E-17		2.22	[1.85-2.63]	Affymetrix, Illumina [6036699] (imputed)	N
609	chr6_dbb_hap3	3199767	3199768	rs641153	21665990	Yu Y	2011-06-10	Hum Mol Genet	Common variants near FRK/COL10A1 and VEGFA are associated with advanced age-related macular degeneration.	Age-related macular degeneration	2,594 European ancestry cases, 4,134 European ancestry controls	5,640 European ancestry cases, 52,174 European ancestry controls	6p21.33	CFB	rs641153-?	0.90	6E-31		1.85	[NR]	Affymetrix [6036699] (imputed)	N
609	chr6_dbb_hap3	3199767	3199768	rs641153	20385826	Neale BM	2010-04-12	Proc Natl Acad Sci U S A	Genome-wide association study of advanced age-related macular degeneration identifies a role of the hepatic lipase gene (LIPC).	Age-related macular degeneration	979 cases, 1,709 controls	868 European ancestry cases, 410 European ancestry controls, 4,921 cases, 3,824 controls	6p21.33	CFB, C2	rs641153-?	NR	2E-20				Affymetrix [632932]	N
609	chr6_dbb_hap3	3200522	3200523	rs1048709	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CFB	5,365 Icelandic ancestry individuals	NA	6p21.33		rs1048709-A	0.2856	2E-16		0.172241	[0.13-0.21] unit decrease	Illumina [7506463] (imputed)	N
609	chr6_dbb_hap3	3200522	3200523	rs1048709	31375628	Tengvall K	2019-08-02	Proc Natl Acad Sci U S A	Molecular mimicry between Anoctamin 2 and Epstein-Barr virus nuclear antigen 1 associates with multiple sclerosis risk.	Anti-anoctamin 2 antibody levels	11,936 European ancestry individuals	NA	6p21.33	NR	rs1048709-A	NR	3E-7		0.054	[0.029-0.079] unit increase	Illumina [615763]	N
609	chr6_dbb_hap3	3200731	3200732	rs4151669	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	DXO, C2, CFB, EHMT2, SLC44A4, EHMT2-AS1, ZBTB12, XXbac-BPG116M5.17, C2-AS1, NELFE, MIR1236, STK19, C4A	rs4151669-A	0.04112337	6E-28	(EA, Complement factor B)	1.17	[0.97-1.37] unit decrease	Affymetrix [509946]	N
609	chr6_dbb_hap3	3201987	3201988	rs537160	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p21.33	NR	rs537160-G	0.6394	3E-7		0.0063	[0.0039-0.0087] unit increase	NR [7666894] (imputed)	N
609	chr6_dbb_hap3	3201987	3201988	rs537160	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.33	XXbac-BPG116M5.17, CFB	rs537160-A	0.3352	9E-11		0.0478	[0.033-0.062] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
609	chr6_dbb_hap3	3202294	3202295	rs45600936	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	6p21.33	CFB	rs45600936-T	0.00839800000000002	4E-10		0.07604781	[0.052-0.1] unit decrease	Affymetrix [93095623] (imputed)	N
609	chr6_dbb_hap3	3202538	3202539	rs541862	29234017	Carayol J	2017-12-12	Nat Commun	Protein quantitative trait locus study in obesity during weight-loss identifies a leptin regulator.	Protein levels in obesity	494 European ancestry individuals	NA	6p21.33	NR	rs541862-?	NR	3E-11	(Factor B)	0.15	[0.1-0.2] unit increase	Illumina [4020654] (imputed)	N
609	chr6_dbb_hap3	3202538	3202539	rs541862	22694956	Cipriani V	2012-06-13	Hum Mol Genet	Genome-wide association study of age-related macular degeneration identifies associated variants in the TNXB-FKBPL-NOTCH4 region of chromosome 6p21.3.	Age-related macular degeneration	893 European ancestry cases, 2,199 European ancestry controls	1,411 European ancestry cases, 1,431 European ancestry controls	6p21.33	CFB	rs541862-T	0.99	9E-17		1.89	[1.61-2.17]	Illumina [2272849] (imputed)	N
609	chr6_dbb_hap3	3203127	3203128	rs4151657	24837172	Juyal G	2014-05-16	Gut	Genome-wide association scan in north Indians reveals three novel HLA-independent risk loci for ulcerative colitis.	Ulcerative colitis	603 North Indian ancestry cases, 622 North Indian ancestry controls	733 North Indian ancestry cases, 1,148 North Indian ancestry controls	6p21.33	CFB, BAT2, MSH5, HSPA1L, SLC44A4	rs4151657-G	0.29	5E-14		1.54	[1.38-1.73]	Illumina [480391]	N
609	chr6_dbb_hap3	3204051	3204052	rs4151659	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	CFB	rs4151659-G	0.013	2E-18	(ER membrane protein complex subunit 4, EMC4.13516.46.3)	0.94	[0.72-1.16] unit decrease	Affymetrix [10572788] (imputed)	N
609	chr6_dbb_hap3	3204447	3204448	rs1270942	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	2,018 European ancestry cases, 6,925 European ancestry controls	6p21.33	MHC class III	rs1270942-C		2E-165		2.28	[2.15-2.42]	Illumina [644674]	N
609	chr6_dbb_hap3	3204447	3204448	rs1270942	25936594	Tomer Y	2015-04-27	J Autoimmun	Genome wide identification of new genes and pathways in patients with both autoimmune thyroiditis and type 1 diabetes.	Type 1 diabetes and autoimmune thyroid diseases	346 European ancestry cases, 727 European ancestry controls	185 European ancestry cases, 340 European ancestry controls	6p21.33	BAT2, HSPA1L, CFB, TNXB, NOTCH4	rs1270942-C	NR	5E-25		3.0494		Illumina [514008]	N
609	chr6_dbb_hap3	3204490	3204491	rs4151671	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		AL645922.1	rs4151671-?	NR	2E-8	(male)	2.99493	[NR] unit decrease	Affymetrix [NR] (imputed)	N
609	chr6_dbb_hap3	3204490	3204491	rs4151671	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA		NR	rs4151671-C	0.94890625	7E-10	(IFNAR1, 6055_53_3)	0.3487593	[0.24-0.46] unit increase	Illumina [> 1000000] (imputed)	N
609	chr6_dbb_hap3	3204490	3204491	rs4151671	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA		NR	rs4151671-C	0.94890625	6E-23	(FTMT, 8048_9_3)	0.5590734	[0.45-0.67] unit decrease	Illumina [> 1000000] (imputed)	N
609	chr6_dbb_hap3	3204490	3204491	rs4151671	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA		NR	rs4151671-C	0.94890625	2E-49	(ISG15, 14148_2_3)	0.84025466	[0.73-0.95] unit increase	Illumina [> 1000000] (imputed)	N
609	chr6_dbb_hap3	3204490	3204491	rs4151671	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA		NR	rs4151671-C	0.94890625	2E-23	(DEFB119, 13455_10_3)	0.5583053	[0.45-0.67] unit decrease	Illumina [> 1000000] (imputed)	N
609	chr6_dbb_hap3	3204490	3204491	rs4151671	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA		NR	rs4151671-C	0.94890625	2E-14	(MICA, 2730_58_2)	0.4376745	[0.33-0.55] unit increase	Illumina [> 1000000] (imputed)	N
609	chr6_dbb_hap3	3204490	3204491	rs4151671	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA		NR	rs4151671-C	0.94890625	2E-126	(TNXB, 5698_60_3)	1.3120593	[1.21-1.41] unit increase	Illumina [> 1000000] (imputed)	N
609	chr6_dbb_hap3	3204490	3204491	rs4151671	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA		NR	rs4151671-C	0.94890625	1E-9	(IL15, 10795_32_3)	0.34537017	[0.23-0.46] unit increase	Illumina [> 1000000] (imputed)	N
609	chr6_dbb_hap3	3204490	3204491	rs4151671	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA		NR	rs4151671-C	0.94890625	1E-66	(CFB, 4129_72_1)	0.96344995	[0.86-1.07] unit increase	Illumina [> 1000000] (imputed)	N
609	chr6_dbb_hap3	3204490	3204491	rs4151671	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA		NR	rs4151671-C	0.94890625	1E-41	(C2, 3186_2_2)	0.78192717	[0.67-0.89] unit increase	Illumina [> 1000000] (imputed)	N
609	chr6_dbb_hap3	3205165	3205166	rs2072633	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	CFB	rs2072633-A	NR	2E-10		0.0180815	[0.013-0.024] unit decrease	Affymetrix [321169] (imputed)	N
609	chr6_dbb_hap3	3205165	3205166	rs2072633	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	6p21.33	C2, CFB, MIR1236, NELFE, SKIV2L	rs2072633-A	0.443	6E-13		0.0411	[0.03-0.052] unit decrease	NR [8041861] (imputed)	N
609	chr6_dbb_hap3	3205417	3205418	rs4151672	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		CFB	rs4151672-?	NR	2E-8	(male)	2.99497	[NR] unit decrease	Affymetrix [NR] (imputed)	N
609	chr6_dbb_hap3	3205504	3205505	rs522162	23577725	Naj AC	2013-05-01	Ann Hum Genet	Genetic factors in nonsmokers with age-related macular degeneration revealed through genome-wide gene-environment interaction analysis.	Age-related macular degeneration (extreme sampling)	720 European ancestry grade 5 cases, 513 European ancestry grade 1 controls	70 European ancestry grade 5 cases, 73 European ancestry grade 1 controls	6p21.33	RDBP, CFB, DKFZp779M0311	rs522162-?	0.93	3E-7		2.38	[1.69-3.33]	Affymetrix [2543887] (imputed)	N
609	chr6_dbb_hap3	3205504	3205505	rs522162	23577725	Naj AC	2013-05-01	Ann Hum Genet	Genetic factors in nonsmokers with age-related macular degeneration revealed through genome-wide gene-environment interaction analysis.	Age-related macular degeneration	1,207 European ancestry cases, 686 European ancestry controls	122 European ancestry cases, 86 European ancestry controls	6p21.33	RDBP, CFB, ATF6B, STK19	rs522162-?	0.93	2E-10		2.33	[1.82-3.03]	Affymetrix [2543887] (imputed)	N
609	chr6_dbb_hap3	3206274	3206275	rs550513	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	SKIV2L, CFB, NELFE, C2, C2-AS1, XXbac-BPG116M5.17, MIR1236	rs550513-T	0.07981928	1E-19	(Complement factor B)	0.702	[0.55-0.85] unit increase	Affymetrix [509946]	N
609	chr6_dbb_hap3	3206653	3206654	rs4151665	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs4151665-C	0.06	7E-15	(Beta-defensin 119, DEFB119.13455.10.3)	0.4	[0.3-0.5] unit increase	Affymetrix [10572788] (imputed)	N
609	chr6_dbb_hap3	3207062	3207063	rs2072632	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SPAG11B	5,366 Icelandic ancestry individuals	NA	6p21.33		rs2072632-A	0.2866	3E-45		0.290078	[0.25-0.33] unit decrease	Illumina [7506463] (imputed)	N
609	chr6_dbb_hap3	3207841	3207842	rs630379	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	NELFE	rs630379-A	NR	1E-14		0.0231756	[0.017-0.029] unit decrease	Affymetrix [319769] (imputed)	N
609	chr6_dbb_hap3	3207841	3207842	rs630379	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	NELFE	rs630379-A	NR	2E-13		0.0221378	[0.016-0.028] unit decrease	Affymetrix [319769] (imputed)	N
609	chr6_dbb_hap3	3207841	3207842	rs630379	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	NELFE	rs630379-A	NR	2E-23		0.0325922	[0.026-0.039] unit increase	Affymetrix [323123] (imputed)	N
609	chr6_dbb_hap3	3207841	3207842	rs630379	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	NELFE	rs630379-A	NR	5E-17		0.0254771	[0.02-0.031] unit decrease	Affymetrix [321169] (imputed)	N
609	chr6_dbb_hap3	3209296	3209296	rs35917342	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs35917342-AT	0.101	1E-203	(Neutrophil collagenase, MMP8.2954.56.2)	1.18	[1.1-1.26] unit increase	Affymetrix [10572788] (imputed)	N
609	chr6_dbb_hap3	3209909	3209910	rs9501161	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs9501161-A	0.086	1E-11	(Complement factor B, CFB.4129.72.1)	0.29	[0.21-0.37] unit decrease	Affymetrix [10572788] (imputed)	N
609	chr6_dbb_hap3	3211430	3211431	rs80082277	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	6p21.33	SKIV2L, NELFE, MIR1236	rs80082277-C	0.02	3E-8	(EA)	0.0536	[0.035-0.073] unit decrease	Affymetrix, Illumina [10537485] (imputed)	N
609	chr6_dbb_hap3	3212924	3212925	rs440454	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	6p21.33		rs440454-?	NR	5E-9		0.0056767	[0.0038-0.0076] unit decrease	NR [NR]	N
609	chr6_dbb_hap3	3212924	3212925	rs440454	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p21.33	SKIV2L	rs440454-A	NR	2E-10		0.0210807	[0.015-0.028] unit decrease	Affymetrix [323858] (imputed)	N
609	chr6_dbb_hap3	3214273	3214274	rs2280774	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	CYP21A2, NELFE, DXO, TNXB, C2, C2-AS1, XXbac-BPG116M5.17, CFB, MIR1236, SKIV2L, STK19, C4A, C4B, C4B-AS1, RNA5SP206	rs2280774-A	0.3705942	8E-29	(Complement C4b)	0.5048	[0.42-0.59] unit decrease	Affymetrix [509946]	N
609	chr6_dbb_hap3	3214273	3214274	rs2280774	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	CYP21A2, NELFE, DXO, TNXB, C2, C2-AS1, XXbac-BPG116M5.17, CFB, MIR1236, SKIV2L, STK19, C4A, C4B, C4B-AS1, RNA5SP206	rs2280774-A	0.3705942	8E-12	(EA, gp41 C34 peptide, HIV)	0.3064	[0.22-0.39] unit decrease	Affymetrix [509946]	N
609	chr6_dbb_hap3	3214381	3214382	rs419788	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	SKIV2L	rs419788-T	NR	3E-19		0.0298384	[0.023-0.036] unit decrease	Affymetrix [323858] (imputed)	N
609	chr6_dbb_hap3	3214381	3214382	rs419788	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	SKIV2L	rs419788-T	NR	1E-16		0.0274934	[0.021-0.034] unit decrease	Affymetrix [127266] (imputed)	N
609	chr6_dbb_hap3	3215390	3215391	rs35664695	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p21.33	NR	rs35664695-?	NR	6E-17		0.1764	[0.14-0.22] unit increase	Illumina [at least 560000] (imputed)	N
609	chr6_dbb_hap3	3215933	3215934	rs2734331	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	6p21.33	SKIV2L	rs2734331-A	0.97	7E-13	(X-11470)	0.073	[0.053-0.093] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
609	chr6_dbb_hap3	3216023	3216024	rs592229	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	6p21.33		rs592229-G	0.486	2E-28		0.12	[0.1-0.14] % increase	Affymetrix [NR] (imputed)	N
609	chr6_dbb_hap3	3216023	3216024	rs592229	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	SKIV2L	rs592229-G	NR	3E-9		0.0166622	[0.011-0.022] unit decrease	Affymetrix [319769] (imputed)	N
609	chr6_dbb_hap3	3216023	3216024	rs592229	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	SKIV2L	rs592229-G	NR	6E-18		0.0269889	[0.021-0.033] unit decrease	Affymetrix [323858] (imputed)	N
609	chr6_dbb_hap3	3216023	3216024	rs592229	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	SKIV2L	rs592229-G	NR	2E-8		0.0157493	[0.01-0.021] unit decrease	Affymetrix [319769] (imputed)	N
609	chr6_dbb_hap3	3216023	3216024	rs592229	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	SKIV2L	rs592229-G	NR	1E-15		0.0250227	[0.019-0.031] unit decrease	Affymetrix [127266] (imputed)	N
609	chr6_dbb_hap3	3216023	3216024	rs592229	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	SKIV2L	rs592229-G	NR	5E-15		0.023966	[0.018-0.03] unit increase	Affymetrix [323123] (imputed)	N
609	chr6_dbb_hap3	3216023	3216024	rs592229	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p21.33	SKIV2L	rs592229-G	NR	5E-12		0.0214232	[0.015-0.027] unit decrease	Affymetrix [323858] (imputed)	N
609	chr6_dbb_hap3	3216023	3216024	rs592229	25281659	van der Valk RJ	2014-10-03	Hum Mol Genet	A novel common variant in DCST2 is associated with length in early life and height in adulthood.	Infant length	28,238 European ancestry individuals	NA	6p21.33	HLA	rs592229-G	0.43	2E-8		0.048	[0.030-0.066] unit increase	Affymetrix, Illumina [2193675] (imputed)	N
609	chr6_dbb_hap3	3216023	3216024	rs592229	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs592229-G	0.370399655280899	4E-6	(IGP42)	0.1536	[0.088-0.219] unit increase	Illumina [~ 2500000] (imputed)	N
609	chr6_dbb_hap3	3216023	3216024	rs592229	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs592229-G	0.370283129554656	9E-6	(IGP2)	0.1479	[0.083-0.213] unit increase	Illumina [~ 2500000] (imputed)	N
609	chr6_dbb_hap3	3216044	3216045	rs429608	23455636	Fritsche LG	2013-03-03	Nat Genet	Seven new loci associated with age-related macular degeneration.	Age-related macular degeneration	6,713 European ancestry cases, 48,402 European ancestry contols, 110 Southern Indian ancestry cases, 119 Southern Indian ancestry controls, 827 Japanese ancestry cases, 3,323 Japanese ancestry controls	9,070 European ancestry cases, 7,683 European ancestry contols, 461 East Asian ancestry cases, 547 East Asian ancestry controls	6p21.33	CFB, C2	rs429608-G	0.86	4E-89		1.74	[1.68-1.79]	Affymetrix, Illumina [2442884] (imputed)	N
609	chr6_dbb_hap3	3216044	3216045	rs429608	20861866	Kopplin LJ	2010-09-23	Genes Immun	Genome-wide association identifies SKIV2L and MYRIP as protective factors for age-related macular degeneration.	Age-related macular degeneration	684 European ancestry cases, 188 European ancestry controls	1,896 European ancestry cases, 1,866 European ancestry controls	6p21.33	BF, SKIV2L	rs429608-?	NR	5E-15		1.85	[NR]	Affymetrix [> 361556] (imputed)	N
609	chr6_dbb_hap3	3216044	3216045	rs429608	20385819	Chen W	2010-04-12	Proc Natl Acad Sci U S A	Genetic variants near TIMP3 and high-density lipoprotein-associated loci influence susceptibility to age-related macular degeneration.	Age-related macular degeneration	2,157 European ancestry cases, 1,150 European ancestry controls	7,892 European ancestry cases, 5,998 European ancestry controls, 678 Japanese ancestry cases, 336 Japanese ancestry controls	6p21.33	CFB, C2	rs429608-G	0.842	3E-21		2.16	[1.84-2.53]	Illumina [~ 2500000] (imputed)	N
609	chr6_dbb_hap3	3216719	3216720	rs401775	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p21.33	NR	rs401775-?	NR	3E-12		0.1102	[0.079-0.141] unit increase	Illumina [at least 560000] (imputed)	N
609	chr6_dbb_hap3	3218743	3218744	rs406936	23577725	Naj AC	2013-05-01	Ann Hum Genet	Genetic factors in nonsmokers with age-related macular degeneration revealed through genome-wide gene-environment interaction analysis.	Age-related macular degeneration	1,207 European ancestry cases, 686 European ancestry controls	122 European ancestry cases, 86 European ancestry controls	6p21.33	SKIV2L	rs406936-?	0.10	7E-7		1.75	[1.41-2.17]	Affymetrix [2543887] (imputed)	N
609	chr6_dbb_hap3	3219100	3219101	rs492899	31241743	Jaeger M	2019-04-24	J Infect Dis	A Genome-Wide Functional Genomics Approach Identifies Susceptibility Pathways to Fungal Bloodstream Infection in Humans.	Candidemia	161 European ancestry cases, 152 European ancestry controls	NA	6p21.33	NR	rs492899-?	NR	2E-6		5.5555553	[NR]	Illumina [5326313] (imputed)	N
609	chr6_dbb_hap3	3219100	3219101	rs492899	30854688	Wang C	2019-03-10	Hepatology	Genome Wide Association Studies of Specific Antinuclear Autoantibody Sub-phenotypes in Primary Biliary Cholangitis.	Anti-sp100 seropositivity in primary biliary cholangitis	211 Han Chinese ancestry cases, 711 Han Chinese ancestry controls	234 Han Chinese ancestry cases, 1,018 Han Chinese ancestry controls	6p21.33	NR	rs492899-G	0.193	3E-22		2.9	[2.34-3.66]	Illumina [794531]	N
609	chr6_dbb_hap3	3219559	3219560	rs9296004	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TYK2	5,361 Icelandic ancestry individuals	NA	6p21.33		rs9296004-C	0.09963	6E-11		0.203156	[0.14-0.26] unit increase	Illumina [7506463] (imputed)	N
609	chr6_dbb_hap3	3219559	3219560	rs9296004	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LDLRAD4	5,362 Icelandic ancestry individuals	NA	6p21.33		rs9296004-C	0.09963	7E-11		0.200339	[0.14-0.26] unit increase	Illumina [7506463] (imputed)	N
609	chr6_dbb_hap3	3219559	3219560	rs9296004	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ISG15	5,349 Icelandic ancestry individuals	NA	6p21.33		rs9296004-C	0.09963	8E-62		0.488305	[0.43-0.55] unit decrease	Illumina [7506463] (imputed)	N
609	chr6_dbb_hap3	3219559	3219560	rs9296004	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL18RAP	5,360 Icelandic ancestry individuals	NA	6p21.33		rs9296004-C	0.09963	6E-30		0.350014	[0.29-0.41] unit decrease	Illumina [7506463] (imputed)	N
609	chr6_dbb_hap3	3219559	3219560	rs9296004	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FTMT	5,365 Icelandic ancestry individuals	NA	6p21.33		rs9296004-C	0.09963	4E-81		0.580682	[0.52-0.64] unit increase	Illumina [7506463] (imputed)	N
609	chr6_dbb_hap3	3219559	3219560	rs9296004	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DEFB119	5,366 Icelandic ancestry individuals	NA	6p21.33		rs9296004-C	0.09963	3E-94		0.623132	[0.56-0.68] unit increase	Illumina [7506463] (imputed)	N
609	chr6_dbb_hap3	3219559	3219560	rs9296004	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C4A;C4B	5,353 Icelandic ancestry individuals	NA	6p21.33		rs9296004-C	0.09963	1E-39		0.393378	[0.33-0.45] unit increase	Illumina [7506463] (imputed)	N
609	chr6_dbb_hap3	3219559	3219560	rs9296004	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	SKIV2L	rs9296004-C	0.082	3E-40	(Beta-defensin 119, DEFB119.13455.10.3)	0.61	[0.51-0.71] unit increase	Affymetrix [10572788] (imputed)	N
609	chr6_dbb_hap3	3221149	3221150	rs3911893	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DEFB119	5,366 Icelandic ancestry individuals	NA	6p21.33		rs3911893-A	0.0572	2E-35		0.507255	[0.43-0.59] unit increase	Illumina [7506463] (imputed)	N
609	chr6_dbb_hap3	3221332	3221333	rs106287	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	6p21.33	SKIV2L	rs106287-A	0.0424830000000001	8E-12		0.03863092	[0.028-0.05] unit decrease	Affymetrix [93095623] (imputed)	N
609	chr6_dbb_hap3	3221639	3221640	rs34241101	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6p21.33	NR	rs34241101-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
609	chr6_dbb_hap3	3221639	3221640	rs34241101	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Strep throat	52,487 European ancestry cases, 22,017 European ancestry controls	NA	6p21.33	NR	rs34241101-?	NR	2E-7		0.0548	[0.034-0.076] unit increase	Illumina [at least 560000] (imputed)	N
609	chr6_dbb_hap3	3222250	3222251	rs410851	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	6p21.33		rs410851-C	NR	1E-16		0.0169	[0.013-0.021] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
609	chr6_dbb_hap3	3222250	3222251	rs410851	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	6p21.33		rs410851-C	NR	3E-21		0.02	[0.016-0.024] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
609	chr6_dbb_hap3	3222250	3222251	rs410851	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	SKIV2L	rs410851-T	NR	5E-12		0.0206765	[0.015-0.027] unit increase	Affymetrix [321016] (imputed)	N
609	chr6_dbb_hap3	3223702	3223703	rs45531831	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	TNXB	rs45531831-T	0.023	3E-116	(Tenascin-X, TNXB.5698.60.3)	1.75	[1.59-1.91] unit decrease	Affymetrix [10572788] (imputed)	N
609	chr6_dbb_hap3	3224927	3224928	rs41267118	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL18RAP	5,360 Icelandic ancestry individuals	NA	6p21.33		rs41267118-A	0.04712	9E-9		0.259513	[0.17-0.35] unit decrease	Illumina [7506463] (imputed)	N
609	chr6_dbb_hap3	3225106	3225107	rs115085021	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CFB	5,365 Icelandic ancestry individuals	NA	6p21.33		rs115085021-C	0.03863	6E-25		0.502999	[0.41-0.6] unit increase	Illumina [7506463] (imputed)	N
609	chr6_dbb_hap3	3225800	3225801	rs75393409	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs75393409-?		2E-7		1.06	[1.04-1.09]	Illumina [7645193] (imputed)	N
609	chr6_dbb_hap3	3225800	3225801	rs75393409	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs75393409-?		4E-8		1.78	[1.45-2.18]	Illumina [7645193] (imputed)	N
609	chr6_dbb_hap3	3226479	3226480	rs389884	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FTMT	5,365 Icelandic ancestry individuals	NA	6p21.33		rs389884-G	0.08177	6E-137		0.828667	[0.76-0.89] unit decrease	Illumina [7506463] (imputed)	N
609	chr6_dbb_hap3	3226479	3226480	rs389884	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p21.33	STK19	rs389884-G	0.342	1E-32				Illumina [118177]	N
609	chr6_dbb_hap3	3226479	3226480	rs389884	23263863	Li J	2012-12-20	Hum Mol Genet	GWAS of blood cell traits identifies novel associated loci and epistatic interactions in Caucasian and African-American children.	Hematology traits	7,943 African American children, 6,234 European ancestry children	NA	6p21.33	CFB, STK19, ZBTB12	rs389884-C	0.0953	2E-8	(EA, WBC)	0.0254	[0.017-0.034] unit decrease	Illumina [544917]	N
609	chr6_dbb_hap3	3226479	3226480	rs389884	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.33	intergenic	rs389884-C	0.1148	8E-66		3.65	[NR]	Illumina [242824]	N
609	chr6_dbb_hap3	3227139	3227140	rs387608	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SIGLEC8	5,359 Icelandic ancestry individuals	NA	6p21.33		rs387608-A	0.1429	6E-12		0.181754	[0.13-0.23] unit increase	Illumina [7506463] (imputed)	N
609	chr6_dbb_hap3	3227139	3227140	rs387608	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PCDHGB4	5,352 Icelandic ancestry individuals	NA	6p21.33		rs387608-A	0.1429	2E-12		0.184372	[0.13-0.24] unit increase	Illumina [7506463] (imputed)	N
609	chr6_dbb_hap3	3227139	3227140	rs387608	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein OSM	5,348 Icelandic ancestry individuals	NA	6p21.33		rs387608-A	0.1429	4E-12		0.174055	[0.12-0.22] unit increase	Illumina [7506463] (imputed)	N
609	chr6_dbb_hap3	3227139	3227140	rs387608	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DES	5,344 Icelandic ancestry individuals	NA	6p21.33		rs387608-A	0.1429	5E-14		0.190553	[0.14-0.24] unit increase	Illumina [7506463] (imputed)	N
609	chr6_dbb_hap3	3227139	3227140	rs387608	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CFP	5,352 Icelandic ancestry individuals	NA	6p21.33		rs387608-A	0.1429	1E-15		0.207744	[0.16-0.26] unit decrease	Illumina [7506463] (imputed)	N
609	chr6_dbb_hap3	3227139	3227140	rs387608	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	SKIV2L, C4B, TNXB, DXO, STK19, C4A, C4A-AS1, CYP21A1P, TNXA, AL645922.1, STK19B, CYP21A2, C4B-AS1	rs387608-A	0.1214859	3E-25	(gp41 C34 peptide, HIV)	0.6703	[0.55-0.79] unit increase	Affymetrix [509946]	N
609	chr6_dbb_hap3	3227211	3227212	rs116420479	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	6p21.33	HLA region	rs116420479-?	NR	3E-8	(EA)			Affymetrix, Illumina [10537485] (imputed)	N
609	chr6_dbb_hap3	3227211	3227212	rs116420479	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	6p21.33	HLA region	rs116420479-?	NR	1E-8				Affymetrix, Illumina [10537485] (imputed)	N
609	chr6_dbb_hap3	3228813	3228814	rs41315812	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein USP25	5,360 Icelandic ancestry individuals	NA	6p21.33		rs41315812-T	0.0381	4E-157		1.22583	[1.14-1.32] unit increase	Illumina [7506463] (imputed)	N
609	chr6_dbb_hap3	3229617	3229618	rs1738434	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.33		rs1738434-G	0.595	1E-62				Affymetrix [10369434] (imputed)	N
609	chr6_dbb_hap3	3229617	3229618	rs1738434	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	STK19	rs1738434-T	NR	7E-11		0.0207324	[0.014-0.027] unit increase	Affymetrix [323858] (imputed)	N
609	chr6_dbb_hap3	3229617	3229618	rs1738434	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	STK19	rs1738434-T	NR	3E-9		0.0189414	[0.013-0.025] unit increase	Affymetrix [127266] (imputed)	N
609	chr6_dbb_hap3	3229617	3229618	rs1738434	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	STK19	rs1738434-T	NR	2E-10		0.0197638	[0.014-0.026] unit decrease	Affymetrix [323123] (imputed)	N
609	chr6_dbb_hap3	3229617	3229618	rs1738434	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p21.33	STK19	rs1738434-T	NR	4E-9		0.0185989	[0.012-0.025] unit increase	Affymetrix [323858] (imputed)	N
609	chr6_dbb_hap3	3229617	3229618	rs1738434	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	STK19	rs1738434-T	0.412	4E-34	(Trypsin-3, PRSS3.3479.71.2)	0.3	[0.26-0.34] unit decrease	Affymetrix [10572788] (imputed)	N
609	chr6_dbb_hap3	3230810	3230811	rs12524149	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs12524149-C	0.677	9E-49				Affymetrix [10369434] (imputed)	N
609	chr6_dbb_hap3	3231226	3231227	rs2734325	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	6p21.33	STK19	rs2734325-T	NR	3E-7	(EA)	1.0615711	[1.04-1.08]	Illumina [6627481] (imputed)	N
609	chr6_dbb_hap3	3232194	3232195	rs6941112	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	STK19	rs6941112-A	NR	3E-9		0.019993	[0.013-0.027] unit decrease	Affymetrix [323123] (imputed)	N
609	chr6_dbb_hap3	3232194	3232195	rs6941112	34011352	Schwarm C	2021-05-19	Orphanet J Rare Dis	Identification of two novel bullous pemphigoid- associated alleles, HLA-DQA1*05:05 and -DRB1*07:01, in Germans.	Bullous pemphigoid	438 German cases, 417 German controls	NA	6p21.33	STK19	rs6941112-?	NR	7E-6		0.498031	[0.28-0.71] unit increase	Affymetrix [up to 386296] (imputed)	N
609	chr6_dbb_hap3	3232194	3232195	rs6941112	31972866	Nagel M	2020-01-23	Acta Psychiatr Scand	Genome-wide association study of the sensitivity to environmental stress and adversity (SESA) neuroticism cluster.	Sensitivity to environmental stress and adversity	351,827 European ancestry individuals	NA	6p21.33	NR	rs6941112-A	NR	6E-12		0.01765	NR unit increase	NR [7259579]	N
609	chr6_dbb_hap3	3232554	3232555	rs77143442	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs77143442-C	0.023	3E-27	(Interleukin-21, IL21.7124.18.3)	0.9	[0.74-1.06] unit decrease	Affymetrix [10572788] (imputed)	N
609	chr6_dbb_hap3	3232607	3232608	rs181705462	26691988	Fritsche LG	2015-12-21	Nat Genet	A large genome-wide association study of age-related macular degeneration highlights contributions of rare and common variants.	Advanced age-related macular degeneration	16,144 European ancestry cases, 17,832 European ancestry controls	473 Asian ancestry cases, 1,099 Asian ancestry controls, 52 African ancestry cases, 361 African ancestry cases, 254 other non-European ancestry cases, 694 other non-European ancestry controls	6p21.33	C2, CFB, SKIV2L	rs181705462-?	NR	3E-10	(EA)	1.55		Illumina [12023830] (imputed)	N
609	chr6_dbb_hap3	3233040	3233041	rs389883	30626913	Amare AT	2019-01-09	Mol Psychiatry	Bivariate genome-wide association analyses of the broad depression phenotype combined with major depressive disorder, bipolar disorder or schizophrenia reveal eight novel genetic loci for depression.	Broad depression or schizophrenia	9,240 European ancestry broad depression cases, 9,519 European ancestry broad depression controls, 51,258 European ancestry individuals, 36,989 European and East Asian ancestry schizophrenia cases, 113,075 European and East Asian ancestry schizophrenia controls	322,580 individuals	6p21.33	STK19	rs389883-T	0.68	1E-12				Affymetrix, Illumina [at least 918921] (imputed)	N
609	chr6_dbb_hap3	3233497	3233498	rs114632474	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		STK19	rs114632474-?	NR	3E-10		1.8011	[NR] unit decrease	Affymetrix [NR] (imputed)	N
609	chr6_dbb_hap3	3257851	3257852	rs199619373	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	6p21.33	PRRC2A	rs199619373-A	0.1293	4E-8	(S1P d16:1)	0.1068	[0.069-0.144] unit decrease	Illumina [~ 47000000] (imputed)	N
609	chr6_dbb_hap3	3259937	3259938	rs28641793	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	6p21.33	NR	rs28641793-A	0.011961	6E-14		0.0840715	[0.061-0.107] unit increase	Affymetrix [16585745] (imputed)	N
609	chr6_dbb_hap3	3260305	3260306	rs28361034	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	C4A	rs28361034-G	0.722	7E-36	(Glutamate receptor 4, GRIA4.10760.107.3)	0.36	[0.3-0.42] unit increase	Affymetrix [10572788] (imputed)	N
609	chr6_dbb_hap3	3260305	3260306	rs28361034	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	C4A	rs28361034-G	0.722	1E-18	(Vesicle-fusing ATPase, NSF.13992.12.3)	0.26	[0.2-0.32] unit increase	Affymetrix [10572788] (imputed)	N
609	chr6_dbb_hap3	3260840	3260841	rs554383943	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.33	NR	rs554383943-C	0.986	2E-13		3.634	[3.29-3.98]	Illumina [11270530] (imputed)	N
609	chr6_dbb_hap3	3266728	3266729	rs4959021	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	6p21.33	Intergenic	rs4959021-T	NR	2E-6		0.0232941	[0.014-0.033] unit increase	Illumina [13519193] (imputed)	N
609	chr6_dbb_hap3	3266728	3266729	rs4959021	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.33	Intergenic	rs4959021-T	NR	5E-7	(women)	0.0322206	[0.02-0.045] unit increase	Illumina [13520550] (imputed)	N
609	chr6_dbb_hap3	3266728	3266729	rs4959021	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.33	Intergenic	rs4959021-T	NR	2E-9		0.0268709	[0.018-0.036] unit increase	Illumina [13520550] (imputed)	N
609	chr6_dbb_hap3	3266728	3266729	rs4959021	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	6p21.33	Intergenic	rs4959021-T	NR	3E-19		0.0468195	[0.037-0.057] unit increase	Illumina [13520550] (imputed)	N
609	chr6_dbb_hap3	3273938	3273939	rs200283861	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.33	NR	rs200283861-A	0.277	3E-23		1.203	[1.17-1.24]	Illumina [11270530] (imputed)	N
609	chr6_dbb_hap3	3273997	3273998	rs451637	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs451637-T	0.308	2E-22	(Beta-defensin 119, DEFB119.13455.10.3)	0.28	[0.22-0.34] unit decrease	Affymetrix [10572788] (imputed)	N
609	chr6_dbb_hap3	3275739	3275740	rs406658	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LDLRAD4	5,362 Icelandic ancestry individuals	NA	6p21.33		rs406658-A	0.1189	3E-18		0.250928	[0.19-0.31] unit increase	Illumina [7506463] (imputed)	N
609	chr6_dbb_hap3	3275739	3275740	rs406658	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HNF4A	5,363 Icelandic ancestry individuals	NA	6p21.33		rs406658-A	0.1189	5E-14		0.217282	[0.16-0.27] unit increase	Illumina [7506463] (imputed)	N
609	chr6_dbb_hap3	3275739	3275740	rs406658	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6p21.33	C4B	rs406658-A	0.110604	2E-10		0.024302784	[0.017-0.032] unit increase	Affymetrix [93095623] (imputed)	N
609	chr6_dbb_hap3	3275739	3275740	rs406658	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	C4A, C4B	rs406658-A	0.119	3E-52	(Complement C4, C4A.C4B.4481.34.2)	0.56	[0.48-0.64] unit increase	Affymetrix [10572788] (imputed)	N
610	chr6_dbb_hap3	3284482	3284483	rs431204	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p21.33	NR	rs431204-?	NR	1E-6		4.868	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
610	chr6_dbb_hap3	3284519	3284520	rs4713496	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.33		rs4713496-A	0.981	1E-36				Affymetrix [10369434] (imputed)	N
610	chr6_dbb_hap3	3284519	3284520	rs4713496	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs4713496-A	0.981	3E-36				Affymetrix [10369434] (imputed)	N
610	chr6_dbb_hap3	3284570	3284571	rs113720465	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.33	NR	rs113720465-A	0.052	6E-30	(conditional)	0.447	[0.31-0.59]	Illumina [11270530] (imputed)	N
610	chr6_dbb_hap3	3284864	3284865	rs396458	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein UBC	5,349 Icelandic ancestry individuals	NA	6p21.33		rs396458-G	0.1452	4E-20		0.229839	[0.18-0.28] unit increase	Illumina [7506463] (imputed)	N
610	chr6_dbb_hap3	3284864	3284865	rs396458	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TRIL	5,360 Icelandic ancestry individuals	NA	6p21.33		rs396458-G	0.1452	7E-12		0.183406	[0.13-0.24] unit increase	Illumina [7506463] (imputed)	N
610	chr6_dbb_hap3	3284864	3284865	rs396458	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LAYN	5,339 Icelandic ancestry individuals	NA	6p21.33		rs396458-G	0.1452	3E-15		0.189442	[0.14-0.24] unit increase	Illumina [7506463] (imputed)	N
610	chr6_dbb_hap3	3284864	3284865	rs396458	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL34	5,345 Icelandic ancestry individuals	NA	6p21.33		rs396458-G	0.1452	4E-20		0.227625	[0.18-0.28] unit increase	Illumina [7506463] (imputed)	N
610	chr6_dbb_hap3	3284864	3284865	rs396458	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GCNT4	5,342 Icelandic ancestry individuals	NA	6p21.33		rs396458-G	0.1452	3E-12		0.175139	[0.13-0.22] unit increase	Illumina [7506463] (imputed)	N
610	chr6_dbb_hap3	3285812	3285813	rs6462	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	CYP21A2	rs6462-C	NR	2E-9		0.0206131	[0.014-0.027] unit increase	Affymetrix [323123] (imputed)	N
610	chr6_dbb_hap3	3286101	3286102	rs6474	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	CYP21A2	rs6474-A	NR	4E-9		0.0198676	[0.013-0.026] unit increase	Affymetrix [323858] (imputed)	N
610	chr6_dbb_hap3	3286111	3286112	rs6455	26385043	Kertai MD	2015-06-17	Am Heart J	Genome-wide association study of new-onset atrial fibrillation after coronary artery bypass grafting surgery.	Postoperative atrial fibrillation in coronary artery bypass grafting surgery	620 European ancestry cases, 257 European ancestry controls	220 cases, 84 controls	6p21.33	CYP21A2	rs6455-G	0.015	3E-6		1.96	[0.51-7.58]	Illumina [524975]	N
610	chr6_dbb_hap3	3286278	3286279	rs6466	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Scarlet fever	6,812 European ancestry cases, 113,837 European ancestry controls	NA	6p21.33	NR	rs6466-?	NR	3E-6		0.0939	[0.055-0.133] unit increase	Illumina [at least 560000] (imputed)	N
610	chr6_dbb_hap3	3286839	3286840	rs6458	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TMEM52B	5,359 Icelandic ancestry individuals	NA	6p21.33		rs6458-G	0.119	2E-13		0.212277	[0.16-0.27] unit increase	Illumina [7506463] (imputed)	N
610	chr6_dbb_hap3	3286839	3286840	rs6458	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ISG15	5,349 Icelandic ancestry individuals	NA	6p21.33		rs6458-G	0.119	8E-28		0.307651	[0.25-0.36] unit decrease	Illumina [7506463] (imputed)	N
610	chr6_dbb_hap3	3286839	3286840	rs6458	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ERP29	5,363 Icelandic ancestry individuals	NA	6p21.33		rs6458-G	0.119	1E-12		0.209088	[0.15-0.27] unit increase	Illumina [7506463] (imputed)	N
610	chr6_dbb_hap3	3286839	3286840	rs6458	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CMPK1	5,365 Icelandic ancestry individuals	NA	6p21.33		rs6458-G	0.119	6E-14		0.220731	[0.16-0.28] unit increase	Illumina [7506463] (imputed)	N
610	chr6_dbb_hap3	3286839	3286840	rs6458	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C4A;C4B	5,362 Icelandic ancestry individuals	NA	6p21.33		rs6458-G	0.119	8E-56		0.450845	[0.39-0.51] unit increase	Illumina [7506463] (imputed)	N
610	chr6_dbb_hap3	3286840	3286841	rs6459	33941608	Khan A	2021-05-03	J Am Soc Nephrol	Medical Records-Based Genetic Studies of the Complement System.	Complement C4 levels	3,247 European ancestry individuals, 600 African ancestry individuals, 151 East Asian ancestry individuals	NA	6p21.33	C4	rs6459-T	0.12	8E-29		0.38	[0.32-0.43] unit increase	NR [NR] (imputed)	N
610	chr6_dbb_hap3	3286840	3286841	rs6459	33941608	Khan A	2021-05-03	J Am Soc Nephrol	Medical Records-Based Genetic Studies of the Complement System.	Complement C4 levels	3,247 European ancestry individuals, 600 African ancestry individuals, 151 East Asian ancestry individuals	NA	6p21.33	C4	rs6459-T	0.1	8E-30	(EA)	0.45	[0.39-0.50] unit increase	NR [NR] (imputed)	N
610	chr6_dbb_hap3	3288139	3288140	rs6447	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C4A;C4B	5,353 Icelandic ancestry individuals	NA	6p21.33		rs6447-A	0.01467	1E-18		0.67965	[0.53-0.83] unit decrease	Illumina [7506463] (imputed)	N
610	chr6_dbb_hap3	3288494	3288495	rs415620	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.33		rs415620-T	0.943	2E-17				Affymetrix [10369434] (imputed)	N
610	chr6_dbb_hap3	3288516	3288517	rs7774739	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.33	NR	rs7774739-A	0.993	1E-10	(conditional)	0.483	[0.26-0.7]	Illumina [11270530] (imputed)	N
610	chr6_dbb_hap3	3288590	3288591	rs7756934	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6p21.33	TNXB	rs7756934-?	NR	9E-6	(TAG 58:9)	0.2544521	[0.14-0.37] unit increase	Affymetrix [at least 2500000] (imputed)	N
610	chr6_dbb_hap3	3289948	3289949	rs1135809	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	TNXB	rs1135809-G	NR	1E-11		0.0213697	[0.015-0.028] unit decrease	Affymetrix [323123] (imputed)	N
610	chr6_dbb_hap3	3290420	3290421	rs2734313	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	TNXB	rs2734313-C	NR	9E-10		0.0195186	[0.013-0.026] unit increase	Affymetrix [323858] (imputed)	N
610	chr6_dbb_hap3	3290420	3290421	rs2734313	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	TNXB	rs2734313-C	NR	3E-8		0.0176763	[0.011-0.024] unit increase	Affymetrix [127266] (imputed)	N
610	chr6_dbb_hap3	3290420	3290421	rs2734313	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	TNXB	rs2734313-C	NR	5E-9		0.0169883	[0.011-0.023] unit increase	Affymetrix [321169] (imputed)	N
610	chr6_dbb_hap3	3290574	3290575	rs2856451	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	TNXB	rs2856451-A	NR	8E-12		0.0193125	[0.014-0.025] unit decrease	Affymetrix [319769] (imputed)	N
610	chr6_dbb_hap3	3290574	3290575	rs2856451	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	TNXB	rs2856451-A	NR	2E-13		0.0230817	[0.017-0.029] unit decrease	Affymetrix [323858] (imputed)	N
610	chr6_dbb_hap3	3290574	3290575	rs2856451	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	TNXB	rs2856451-A	NR	6E-11		0.0185015	[0.013-0.024] unit decrease	Affymetrix [319769] (imputed)	N
610	chr6_dbb_hap3	3290574	3290575	rs2856451	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	TNXB	rs2856451-A	NR	2E-11		0.0210983	[0.015-0.027] unit decrease	Affymetrix [127266] (imputed)	N
610	chr6_dbb_hap3	3290574	3290575	rs2856451	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	TNXB	rs2856451-A	NR	2E-15		0.0227758	[0.017-0.028] unit decrease	Affymetrix [321169] (imputed)	N
610	chr6_dbb_hap3	3290574	3290575	rs2856451	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p21.33	TNXB	rs2856451-G	0.518309	2E-11		0.017992081	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
610	chr6_dbb_hap3	3290574	3290575	rs2856451	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	6p21.33	TNXB	rs2856451-G	0.518312	6E-11		0.017482799	[0.012-0.023] unit increase	Affymetrix [93095623] (imputed)	N
610	chr6_dbb_hap3	3290574	3290575	rs2856451	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	6p21.33	NR	rs2856451-G	0.519311	4E-14		0.0506538	[0.037-0.064] unit decrease	Affymetrix [17914406] (imputed)	N
610	chr6_dbb_hap3	3290574	3290575	rs2856451	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	White blood cell count	8,825 African American individuals, 18,251 Hispanic/Latino individuals, 543 Asian ancestry individuals, 606 Native American ancestry individuals, 383 individuals	NA	6p21.33	NR	rs2856451-?	NR	7E-6		0.01116211	[0.0063-0.016] unit increase	Illumina [30613845] (imputed)	N
610	chr6_dbb_hap3	3290574	3290575	rs2856451	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	6p21.33	TNXB	rs2856451-G	0.5174	3E-95		0.07491311	[0.068-0.082] unit increase	Affymetrix [~ 2500000] (imputed)	N
610	chr6_dbb_hap3	3290574	3290575	rs2856451	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	6p21.33	TNXB	rs2856451-G	0.5175	5E-57		0.05732686	[0.05-0.064] unit increase	Affymetrix [~ 2500000] (imputed)	N
610	chr6_dbb_hap3	3290574	3290575	rs2856451	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	6p21.33	TNXB	rs2856451-G	0.5175	8E-50		0.05341342	[0.046-0.06] unit increase	Affymetrix [~ 2500000] (imputed)	N
610	chr6_dbb_hap3	3293672	3293673	rs34214527	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	6p21.33	Intergenic	rs34214527-C	0.9156	4E-10		0.0256	[0.018-0.034] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
610	chr6_dbb_hap3	3293791	3293792	rs2856448	35264221	Caron B	2022-03-09	Genome Med	Integrative genetic and immune cell analysis of plasma proteins in healthy donors identifies novel associations involving primary immune deficiency genes.	TN X plasma levels	400 French ancestry individuals	NA	6p21.33		rs2856448-G	NR	1E-38		0.685	[0.64-0.73] ng/mL increase	Illumina [5201092] (imputed)	N
610	chr6_dbb_hap3	3294044	3294045	rs433061	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	6p21.33	NR	rs433061-A	0.111550236715686	4E-17		0.012269953	[0.0094-0.0151] unit decrease	NR [NR]	N
610	chr6_dbb_hap3	3294044	3294045	rs433061	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	6p21.33	NR	rs433061-?	NR	8E-6		0.0786	[0.044-0.113] unit decrease	Illumina [at least 560000] (imputed)	N
610	chr6_dbb_hap3	3296823	3296824	rs146280229	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.33	NR	rs146280229-C	0.007	1E-11	(conditional)	1.815	[1.64-1.99]	Illumina [11270530] (imputed)	N
610	chr6_dbb_hap3	3298598	3298599	rs115521560	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL18RAP	5,360 Icelandic ancestry individuals	NA	6p21.33		rs115521560-C	0.07408	4E-6		0.168353	[0.097-0.24] unit decrease	Illumina [7506463] (imputed)	N
610	chr6_dbb_hap3	3298598	3298599	rs115521560	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C4A;C4B	5,353 Icelandic ancestry individuals	NA	6p21.33		rs115521560-C	0.07408	6E-20		0.322359	[0.25-0.39] unit decrease	Illumina [7506463] (imputed)	N
610	chr6_dbb_hap3	3298728	3298729	rs41316748	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	6p21.33	NR	rs41316748-C	0.0430592148955273	1E-8		0.012935713	[0.0085-0.0174] unit increase	NR [NR]	N
610	chr6_dbb_hap3	3298728	3298729	rs41316748	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	6p21.33	NR	rs41316748-C	0.0430592148955273	2E-8		0.021394862	[0.014-0.029] unit increase	NR [NR]	N
610	chr6_dbb_hap3	3298728	3298729	rs41316748	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	6p21.33	NR	rs41316748-C	0.0430592148955273	2E-8		0.0137647055	[0.0089-0.0186] unit increase	NR [NR]	N
610	chr6_dbb_hap3	3298728	3298729	rs41316748	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	TNXB	rs41316748-C	0.042	2E-114	(Ubiquitin carboxyl-terminal hydrolase 25, USP25.9215.117.3)	1.31	[1.19-1.43] unit increase	Affymetrix [10572788] (imputed)	N
610	chr6_dbb_hap3	3298728	3298729	rs41316748	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p21.33	TNXB	rs41316748-C	0.04	1E-12		1.19	[1.15-1.23]	Illumina [at least 560000] (imputed)	N
610	chr6_dbb_hap3	3298962	3298963	rs2857009	23028341	Yang X	2012-09-13	PLoS Genet	Genome-wide association study for serum complement C3 and C4 levels in healthy Chinese subjects.	Complement C3 and C4 levels	1,999 Han Chinese ancestry male individuals	1,496 Han Chinese ancestry male individuals	6p21.33	C4	rs2857009-G	0.20	1E-22	(Serum level of C4)	0.08	[0.060-0.100] g/L increase	Illumina [1940245] (imputed)	N
610	chr6_dbb_hap3	3300178	3300179	rs34562262	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RACGAP1	5,360 Icelandic ancestry individuals	NA	6p21.33		rs34562262-C	0.04252	7E-83		0.878733	[0.79-0.97] unit decrease	Illumina [7506463] (imputed)	N
610	chr6_dbb_hap3	3300178	3300179	rs34562262	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL18RAP	5,360 Icelandic ancestry individuals	NA	6p21.33		rs34562262-C	0.04252	3E-89		0.913858	[0.82-1] unit decrease	Illumina [7506463] (imputed)	N
610	chr6_dbb_hap3	3300178	3300179	rs34562262	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	6p21.33	TNXB	rs34562262-C	0.059314	9E-12		0.03548271	[0.025-0.046] unit increase	Affymetrix [93095623] (imputed)	N
610	chr6_dbb_hap3	3300178	3300179	rs34562262	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	6p21.33	NR	rs34562262-?		2E-15	(AGER)	0.6405	[NR] unit decrease	Illumina [NR]	N
610	chr6_dbb_hap3	3300347	3300348	rs11969759	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RACGAP1	5,360 Icelandic ancestry individuals	NA	6p21.33		rs11969759-T	0.03907	1E-34		0.606915	[0.51-0.7] unit decrease	Illumina [7506463] (imputed)	N
610	chr6_dbb_hap3	3300347	3300348	rs11969759	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL18RAP	5,360 Icelandic ancestry individuals	NA	6p21.33		rs11969759-T	0.03907	2E-51		0.736692	[0.64-0.83] unit decrease	Illumina [7506463] (imputed)	N
610	chr6_dbb_hap3	3300347	3300348	rs11969759	30636644	Nazarian A	2019-01-12	Alzheimers Res Ther	Genome-wide analysis of genetic predisposition to Alzheimer's disease and related sex disparities.	Alzheimer's disease	952 European ancestry male cases, 1,789 European ancestry female cases, 6,337 European ancestry male controls, 8,402 European ancestry female controls	NA	6p21.33	TNXB	rs11969759-?	NR	2E-6	(females)	1.6222337		Affymetrix, Illumina [2928658] (imputed)	N
610	chr6_dbb_hap3	3304049	3304050	rs6937318	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	TNXB	rs6937318-T	NR	9E-16		0.0245113	[0.019-0.03] unit increase	Affymetrix [323123] (imputed)	N
610	chr6_dbb_hap3	3304049	3304050	rs6937318	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.33		rs6937318-C	0.513236	2E-15		1.0343082	[1.03-1.04]	Affymetrix, Illumina [9851866] (imputed)	N
610	chr6_dbb_hap3	3305078	3305079	rs369637	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	TNXB	rs369637-T	NR	9E-9		0.0231685	[0.015-0.031] unit increase	Affymetrix [323123] (imputed)	N
610	chr6_dbb_hap3	3305078	3305079	rs369637	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.33	ABHD16A, AGER, AGPAT1, AIF1, APOM, ATF6B, ATP6V1G2, ATP6V1G2-DDX39B, BAG6, BTNL2, C2, C2-AS1, C4A, C4B, C4B_2, C6orf10, C6orf15, C6orf25, C6orf47, C6orf48, CCHCR1, CDSN, CFB, CLIC1, CSNK2B, CYP21A1P, CYP21A2, DDAH2, DDX39B, DXO, EGFL8, EHMT2, FKBPL, GPANK1, GPSM3, HCG23, HCG26, HCG27, HCP5, HLA-B, HLA-C, HLA-DOB, HLA-DQA1, HLA-DQA2, HLA-DQB1, HLA-DQB2, HLA-DRA, HLA-DRB1, HLA-DRB5, HLA-DRB6, HSPA1A, HSPA1B, HSPA1L, LOC100507547, LSM2, LST1, LTA, LTB, LY6G5B, LY6G5C, LY6G6C, LY6G6D, LY6G6E, LY6G6F, MCCD1, MICA, MICB, MIR1236, MIR3135B, MIR4646, MIR6721, MIR6832, MIR6833, MIR6891, MSH5, MSH5-SAPCD1, NCR3, NELFE, NEU1, NFKBIL1, NOTCH4, PBX2, POU5F1, PPT2, PPT2-EGFL8, PRRC2A, PRRT1, PSMB8, PSMB8-AS1, PSMB9, PSORS1C1, PSORS1C2, PSORS1C3, RNF5, RNF5P1, SAPCD1, SAPCD1-AS1, SKIV2L, SLC44A4, SNORA38, SNORD117, SNORD48, SNORD52, SNORD84, STK19, TAP1, TAP2, TCF19, TNF, TNXA, TNXB, VARS, VWA7, ZBTB12	rs369637-?		2E-10		1.098901	[1.06-1.12]	Affymetrix, Illumina [NR]	N
610	chr6_dbb_hap3	3305322	3305323	rs1009382	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:0_[M+H]1+/Phosphatidylethanolamine_35:0_[M+H]1+/Phosphatidate_37:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	6p21.33		rs1009382-C	NR	4E-10		0.0841202	[0.058-0.111] unit decrease	Affymetrix [87696910] (imputed)	N
610	chr6_dbb_hap3	3306023	3306024	rs12198173	20041166	Fellay J	2009-12-24	PLoS Genet	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	6p21.33	TNXB	rs12198173-?	NR	3E-6	(progression)			Illumina [NR]	N
610	chr6_dbb_hap3	3307364	3307365	rs1150758	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p21.33	TNXB	rs1150758-C	NR	1E-10		0.0261542	[0.018-0.034] unit decrease	Affymetrix [323858] (imputed)	N
610	chr6_dbb_hap3	3308420	3308421	rs1150757	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	6p21.33	NR	rs1150757-A	0.111940064634901	1E-14		0.014838932	[0.011-0.019] unit decrease	NR [NR]	N
610	chr6_dbb_hap3	3308420	3308421	rs1150757	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	6p21.33	NR	rs1150757-A	0.111940064634901	3E-14		0.019090127	[0.014-0.024] unit decrease	NR [NR]	N
610	chr6_dbb_hap3	3308420	3308421	rs1150757	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	6p21.33	NR	rs1150757-A	0.111940064634901	1E-14		0.012505894	[0.0093-0.0157] unit decrease	NR [NR]	N
610	chr6_dbb_hap3	3308420	3308421	rs1150757	29769526	Estrada K	2018-05-16	Nat Commun	A whole-genome sequence study identifies genetic risk factors for neuromyelitis optica.	Neuromyelitis optica (AQP4-IgG-positive)	66 European ancestry cases, 784 European ancestry controls	66 European ancestry cases, 460 European ancestry controls	6p21.33	C4A, C4B	rs1150757-A	0.1	3E-16		4.66	[3.22-6.74]	Affymetrix [6804788] (imputed)	N
610	chr6_dbb_hap3	3308420	3308421	rs1150757	29769526	Estrada K	2018-05-16	Nat Commun	A whole-genome sequence study identifies genetic risk factors for neuromyelitis optica.	Neuromyelitis optica	66 European ancestry AQP4-IgG antibody seropositive cases, 63 European ancestry AQP4-IgG antibody seronegative cases, 784 European ancestry controls	66 European ancestry AQP4-IgG antibody seropositive cases, 20 European ancestry AQP4-IgG antibody seronegative cases, 460 European ancestry controls	6p21.33	C4A, C4B	rs1150757-A	0.10	7E-12		2.86	[1.98-4.14]	Affymetrix [6804788] (imputed)	N
610	chr6_dbb_hap3	3308420	3308421	rs1150757	27399966	Morris DL	2016-07-11	Nat Genet	Genome-wide association meta-analysis in Chinese and European individuals identifies ten new loci associated with systemic lupus erythematosus.	Systemic lupus erythematosus	1,659 Chinese ancestry cases, 3,398 Chinese ancestry controls, 4,036 European ancestry cases, 6,959 European ancestry controls	3,043 Chinese ancestry cases, 5,074 Chinese ancestry controls, 2,643 European ancestry cases, 9,032 European ancestry controls	6p21.33	MHC class III	rs1150757-?	0.092	2E-101	(EA)	2.53	[NR]	NR [6344733] (imputed)	N
610	chr6_dbb_hap3	3308420	3308421	rs1150757	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	NA	6p21.33	TNXB	rs1150757-A		6E-107		2.33	[NR]	Illumina [> 644674] (imputed)	N
610	chr6_dbb_hap3	3309915	3309916	rs9267797	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs9267797-T	0.015	7E-94	(Tenascin-X, TNXB.5698.60.3)	1.97	[1.77-2.17] unit increase	Affymetrix [10572788] (imputed)	N
610	chr6_dbb_hap3	3311958	3311959	rs204883	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SURF1	5,347 Icelandic ancestry individuals	NA	6p21.33		rs204883-A	0.3642	4E-14		0.138805	[0.1-0.17] unit decrease	Illumina [7506463] (imputed)	N
610	chr6_dbb_hap3	3311958	3311959	rs204883	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	6p21.33	NR	rs204883-A	0.404749301755246	2E-9		0.005591649	[0.0038-0.0074] unit increase	NR [NR]	N
610	chr6_dbb_hap3	3311958	3311959	rs204883	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	6p21.33	Intergenic	rs204883-A	0.414	1E-8	(MTAG)	0.0096	[0.0063-0.0129] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
610	chr6_dbb_hap3	3311958	3311959	rs204883	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	6p21.33	Intergenic	rs204883-A	0.3876	1E-10	(MTAG)	0.0151	[0.01-0.02] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
610	chr6_dbb_hap3	3311958	3311959	rs204883	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	6p21.33	Intergenic	rs204883-A	0.3876	7E-9		0.017	[0.011-0.023] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
610	chr6_dbb_hap3	3312831	3312832	rs1265889	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Nephrotic syndrome	775 European ancestry cases, 475,255 European ancestry controls, 1,314 East Asian ancestry cases, 177,412 East Asian ancestry controls	NA	6p21.33		rs1265889-A	NR	2E-16		0.524	[0.4-0.65] unit increase	Affymetrix, Illumina [25844401] (imputed)	N
610	chr6_dbb_hap3	3313159	3313160	rs3117189	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FTMT	5,365 Icelandic ancestry individuals	NA	6p21.33		rs3117189-A	0.2078	7E-41		0.308372	[0.26-0.35] unit decrease	Illumina [7506463] (imputed)	N
610	chr6_dbb_hap3	3317762	3317763	rs1150755	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	6p21.33	TNXB	rs1150755-?	NR	6E-117		1.3	[1.19-1.41]	Illumina [at least 5000000] (imputed)	N
610	chr6_dbb_hap3	3319817	3319818	rs204881	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p21.33	NR	rs204881-?	NR	5E-14		0.1561	[0.12-0.2] unit increase	Illumina [at least 560000] (imputed)	N
610	chr6_dbb_hap3	3324064	3324065	rs2021783	25249183	Lu X	2014-09-23	Hum Mol Genet	Genome-wide association study in Chinese identifies novel loci for blood pressure and hypertension.	Systolic blood pressure	11,816 Han Chinese ancestry individuals	69,146 Han Chinese ancestry individuals	6p21.33	CYP21A2	rs2021783-C	0.79	3E-9		0.68	[0.44-0.92] unit increase	Affymetrix, Illumina [2485448] (imputed)	N
610	chr6_dbb_hap3	3324064	3324065	rs2021783	25249183	Lu X	2014-09-23	Hum Mol Genet	Genome-wide association study in Chinese identifies novel loci for blood pressure and hypertension.	Hypertension	5,065 Han Chinese ancestry cases, 4,404 Han Chinese ancestry controls	29,799 Han Chinese ancestry cases, 39,347 Han Chinese ancestry controls	6p21.33	CYP21A2	rs2021783-C	0.79	4E-11				Affymetrix, Illumina [2485448] (imputed)	N
610	chr6_dbb_hap3	3324064	3324065	rs2021783	25249183	Lu X	2014-09-23	Hum Mol Genet	Genome-wide association study in Chinese identifies novel loci for blood pressure and hypertension.	Diastolic blood pressure	11,816 Han Chinese ancestry individuals	69,146 Han Chinese ancestry individuals	6p21.33	CYP21A2	rs2021783-C	0.79	2E-12		0.49	[0.35-0.63] unit increase	Affymetrix, Illumina [2485448] (imputed)	N
610	chr6_dbb_hap3	3326482	3326483	rs17201560	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		TNXB	rs17201560-?	NR	3E-10		1.80132	[NR] unit decrease	Affymetrix [NR] (imputed)	N
610	chr6_dbb_hap3	3328636	3328637	rs12211410	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6p21.33		rs12211410-T	0.085	2E-13	(conditional-joint)	0.0185	[0.014-0.023] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
610	chr6_dbb_hap3	3329280	3329281	rs185819	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.33		rs185819-T	0.533	5E-83				Affymetrix [10369434] (imputed)	N
610	chr6_dbb_hap3	3329280	3329281	rs185819	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p21.33		rs185819-T	0.533	1E-58				Affymetrix [10369434] (imputed)	N
610	chr6_dbb_hap3	3329280	3329281	rs185819	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Automobile speeding propensity	404,291 European ancestry individuals	NA	6p21.33	ATF6B	rs185819-T	0.5357	2E-12		0.01581973	[0.011-0.02] unit increase	Affymetrix [11514463] (imputed)	N
610	chr6_dbb_hap3	3329280	3329281	rs185819	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Systolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	6p21.33	TNXB	rs185819-C	0.513	2E-13	(EA, initial)	0.534	[0.39-0.68] unit increase	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
610	chr6_dbb_hap3	3329280	3329281	rs185819	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Systolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	6p21.33	TNXB	rs185819-C	0.513	1E-17		0.365	[0.28-0.45] unit increase	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
610	chr6_dbb_hap3	3329280	3329281	rs185819	18391951	Gudbjartsson DF	2008-04-06	Nat Genet	Many sequence variants affecting diversity of adult human height.	Height	30,968 European ancestry individuals	8,541 European ancestry individuals	6p21.33	HLA class III	rs185819-T	0.52	3E-8		5.2	[3.44-6.96] % s.d. increase	Affymetrix, Illumina [up to 304226]	N
610	chr6_dbb_hap3	3329971	3329972	rs1150754	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	TNXB	rs1150754-T	NR	9E-16		0.0330216	[0.025-0.041] unit decrease	Affymetrix [323858] (imputed)	N
610	chr6_dbb_hap3	3329971	3329972	rs1150754	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	TNXB	rs1150754-T	NR	3E-14		0.0312441	[0.023-0.039] unit decrease	Affymetrix [127266] (imputed)	N
610	chr6_dbb_hap3	3329971	3329972	rs1150754	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Myeloperoxidase levels	21,758 European ancestry individuals	9,173 individuals	6p21.33		rs1150754-T	0.15	7E-9		0.0636	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
610	chr6_dbb_hap3	3329971	3329972	rs1150754	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	6p21.33	TNXB	rs1150754-C	NR	3E-12	(EA)	1.117	[1.09-1.15]	Illumina [6627481] (imputed)	N
610	chr6_dbb_hap3	3329971	3329972	rs1150754	21408207	Chung SA	2011-03-03	PLoS Genet	Differential genetic associations for systemic lupus erythematosus based on anti-dsDNA autoantibody production.	Systemic lupus erythematosus	811 anti-dsDNA positive European ancestry cases, 906 anti-dsDNA negative European ancestry cases, 4,813 European ancestry controls	NA	6p21.33	TNXB	rs1150754-A	0.13	6E-29	(anti-dsDNA +)	2.21	[1.93-2.53]	Illumina [421318] (imputed)	N
610	chr6_dbb_hap3	3339065	3339066	rs1150753	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	6p21.33	NR	rs1150753-G	0.09	6E-19		1.25	[1.19-1.31]	Illumina [8468885] (imputed)	N
610	chr6_dbb_hap3	3339065	3339066	rs1150753	26316170	Demirci FY	2015-08-28	Arthritis Rheumatol	Identification of a New Susceptibility Locus for Systemic Lupus Erythematosus on Chromosome 12 in Individuals of European Ancestry.	Systemic lupus erythematosus	661 European ancestry cases, 487 European ancestry controls	4,467 European ancestry cases, 9,114 European ancestry controls	6p21.33	TNXB	rs1150753-?	NR	6E-9				Affymetrix [up to 700598]	N
610	chr6_dbb_hap3	3339665	3339666	rs774873925	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	TNXB	rs774873925-CA	NR	3E-8		0.0192957	[0.012-0.026] unit increase	Affymetrix [323123] (imputed)	N
610	chr6_dbb_hap3	3340536	3340537	rs57079996	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs57079996-?		1E-7		1.06	[1.04-1.09]	Illumina [7645193] (imputed)	N
610	chr6_dbb_hap3	3340536	3340537	rs57079996	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs57079996-?		4E-8		1.77	[1.45-2.18]	Illumina [7645193] (imputed)	N
610	chr6_dbb_hap3	3343090	3343091	rs41270458	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RACGAP1	5,360 Icelandic ancestry individuals	NA	6p21.33		rs41270458-A	0.02122	1E-45		0.927486	[0.8-1.06] unit decrease	Illumina [7506463] (imputed)	N
610	chr6_dbb_hap3	3343090	3343091	rs41270458	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL18RAP	5,360 Icelandic ancestry individuals	NA	6p21.33		rs41270458-A	0.02122	2E-37		0.831007	[0.7-0.96] unit decrease	Illumina [7506463] (imputed)	N
610	chr6_dbb_hap3	3343920	3343921	rs1150752	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p21.33	TNXB	rs1150752-C		7E-35		0.041	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
610	chr6_dbb_hap3	3343920	3343921	rs1150752	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	6p21.33	NR	rs1150752-C	0.112114488054202	6E-13		0.01584757	[0.012-0.02] unit decrease	NR [NR]	N
610	chr6_dbb_hap3	3345949	3345950	rs13199524	30552173	Aterido A	2018-12-14	Ann Rheum Dis	Genetic variation at the glycosaminoglycan metabolism pathway contributes to the risk of psoriatic arthritis but not psoriasis.	Psoriatic arthritis	744 Spanish ancestry cases, 1,454 Spanish ancestry controls	1,430 cases, 1,417 controls	6p21.33	NR	rs13199524-?	NR	6E-10		6.2	[NR] z-score increase	Illumina [1387382] (imputed)	N
610	chr6_dbb_hap3	3347677	3347678	rs116298992	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TNXB	5,363 Icelandic ancestry individuals	NA	6p21.32		rs116298992-T	0.03624	6E-299		1.674	[1.59-1.76] unit decrease	Illumina [7506463] (imputed)	N
610	chr6_dbb_hap3	3347677	3347678	rs116298992	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.32	NR	rs116298992-C	0.96390625	8E-63	(C2, 3186_2_2)	1.129958	[1-1.26] unit increase	Illumina [> 1000000] (imputed)	N
610	chr6_dbb_hap3	3347677	3347678	rs116298992	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.32	NR	rs116298992-C	0.96390625	6E-141	(TNXB, 5698_60_3)	1.6212647	[1.5-1.74] unit increase	Illumina [> 1000000] (imputed)	N
610	chr6_dbb_hap3	3347677	3347678	rs116298992	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.32	NR	rs116298992-C	0.96390625	5E-58	(ISG15, 14148_2_3)	1.0691733	[0.94-1.2] unit increase	Illumina [> 1000000] (imputed)	N
610	chr6_dbb_hap3	3347677	3347678	rs116298992	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.32	NR	rs116298992-C	0.96390625	3E-16	(DEFB119, 13455_10_3)	0.5401916	[0.41-0.67] unit decrease	Illumina [> 1000000] (imputed)	N
610	chr6_dbb_hap3	3347677	3347678	rs116298992	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.32	NR	rs116298992-C	0.96390625	3E-12	(MICA, 2730_58_2)	0.47020385	[0.34-0.6] unit increase	Illumina [> 1000000] (imputed)	N
610	chr6_dbb_hap3	3347677	3347678	rs116298992	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.32	NR	rs116298992-C	0.96390625	2E-42	(CFB, 4129_72_1)	0.90520996	[0.78-1.03] unit increase	Illumina [> 1000000] (imputed)	N
610	chr6_dbb_hap3	3347677	3347678	rs116298992	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.32	NR	rs116298992-C	0.96390625	1E-14	(FTMT, 8048_9_3)	0.51547647	[0.39-0.65] unit decrease	Illumina [> 1000000] (imputed)	N
610	chr6_dbb_hap3	3349250	3349251	rs41268896	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Atopic dermatitis	2,079 European ancestry cases, 3,867 European ancestry controls	NA	6p21.32	c6orf10	rs41268896-A	NR	4E-8		1.298	[1.238-1.361]	Affymetrix, Illumina, Perlegen [up to 5493100] (imputed)	N
610	chr6_dbb_hap3	3349255	3349256	rs41268899	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	TNXB, ATF6B	rs41268899-A	NR	4E-8		0.0257754	[0.017-0.035] unit increase	Affymetrix [321114] (imputed)	N
610	chr6_dbb_hap3	3350182	3350183	rs41268902	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	6p21.32	NR	rs41268902-A	NR	5E-6		1.09	[NR]	Illumina [7158791] (imputed)	N
610	chr6_dbb_hap3	3350184	3350185	rs28732173	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p21.32	NR	rs28732173-?	NR	4E-16		0.166	[0.13-0.21] unit decrease	Illumina [at least 560000] (imputed)	N
610	chr6_dbb_hap3	3350191	3350192	rs3117181	21829377	Lemaitre RN	2011-07-28	PLoS Genet	Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Plasma omega-3 polyunsaturated fatty acid levels (docosapentaenoic acid)	8,866 European ancestry individuals	NA	6p21.32	TNXB	rs3117181-C	NR	5E-7		0.02	[NR] % increase	Affymetrix, Illumina [NR]	N
610	chr6_dbb_hap3	3351066	3351067	rs3134954	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Intraocular pressure	133,492 European ancestry individuals	NA	6p21.32	TNXB	rs3134954-?	NR	3E-9		0.1058	[0.071-0.141] unit increase	Affymetrix, Illumina [up to 40000000] (imputed)	N
610	chr6_dbb_hap3	3353977	3353978	rs12153855	23886662	Weidinger S	2013-07-25	Hum Mol Genet	A genome-wide association study of atopic dermatitis identifies loci with overlapping effects on asthma and psoriasis.	Atopic dermatitis	1563 European ancestry cases, 4,054 European ancestry controls	2,286 European ancestry cases, 3,160 European ancestry controls	6p21.32	TNXB, CREBL1	rs12153855-T	NR	3E-14		1.581	[1.405-1.779]	Illumina [2406139] (imputed)	N
610	chr6_dbb_hap3	3353977	3353978	rs12153855	22694956	Cipriani V	2012-06-13	Hum Mol Genet	Genome-wide association study of age-related macular degeneration identifies associated variants in the TNXB-FKBPL-NOTCH4 region of chromosome 6p21.3.	Age-related macular degeneration	893 European ancestry cases, 2,199 European ancestry controls	1,411 European ancestry cases, 1,431 European ancestry controls	6p21.32	TNXB	rs12153855-C	0.011	1E-9		1.44	[1.28-1.63]	Illumina [2272849] (imputed)	N
610	chr6_dbb_hap3	3354736	3354737	rs429150	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	TNXB, ATF6B	rs429150-C	NR	3E-8		0.0158143	[0.01-0.021] unit increase	Affymetrix [321169] (imputed)	N
610	chr6_dbb_hap3	3354736	3354737	rs429150	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6p21.32	ATF6B, TNXB	rs429150-C	0.445264	8E-12		0.016466303	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
610	chr6_dbb_hap3	3354736	3354737	rs429150	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6p21.32		rs429150-T	0.5292	2E-9		0.0085	[0.0058-0.0112] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
610	chr6_dbb_hap3	3354736	3354737	rs429150	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6p21.32	Intergenic	rs429150-T	0.5292	1E-11	(MTAG)	0.0089	[0.0064-0.0114] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
610	chr6_dbb_hap3	3354736	3354737	rs429150	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	6p21.32	TNXB, ATF6B	rs429150-C	0.4446	3E-13		0.02583585	[0.019-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
610	chr6_dbb_hap3	3355672	3355673	rs2269426	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Neuroticism	274,107 British ancestry individuals	NA	6p21.32	NR	rs2269426-A	0.3594	3E-12		0.01334	[0.0096-0.0171] unit increase	NR [8968716] (imputed)	N
610	chr6_dbb_hap3	3355672	3355673	rs2269426	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	6p21.32	NR	rs2269426-A	0.37783192572683	3E-11		0.010916309	[0.0077-0.0141] unit increase	NR [NR]	N
610	chr6_dbb_hap3	3355672	3355673	rs2269426	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	6p21.32	NR	rs2269426-A	0.37783192572683	4E-11		0.006849158	[0.0048-0.0089] unit increase	NR [NR]	N
610	chr6_dbb_hap3	3355672	3355673	rs2269426	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	6p21.32	HLA-C	rs2269426-A	0.359398	1E-14		7.71	z score increase	NR [10847151] (imputed)	N
610	chr6_dbb_hap3	3355672	3355673	rs2269426	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling worry	372,869 European ancestry individuals	NA	6p21.32	HLA-C	rs2269426-A	0.359398	4E-15		7.868	unit increase	NR [10847151] (imputed)	N
610	chr6_dbb_hap3	3355672	3355673	rs2269426	19198610	Gudbjartsson DF	2009-02-08	Nat Genet	Sequence variants affecting eosinophil numbers associate with asthma and myocardial infarction.	Eosinophil counts	9,392 European ancestry individuals	12,118 European ancestry individuals, 5,212 East Asian ancestry individuals	6p21.32	MHC	rs2269426-T	0.76	3E-6	(EA)	4.6	[2.7-6.6] % standard unit increase	Illumina [312179]	N
610	chr6_dbb_hap3	3358740	3358741	rs17207986	20848476	Haritunians T	2010-11-01	Inflamm Bowel Dis	Genetic predictors of medically refractory ulcerative colitis.	Ulcerative colitis	324 European ancestry medically refractory ulcerative colitis cases, 537 European ancestry non-medically refractory ulcerative colitis cases, 2,601 European ancestry controls	NA	6p21.32	MHC	rs17207986-G	NR	1E-16	(Analysis III)	3.95	[NR]	Illumina [313720]	N
610	chr6_dbb_hap3	3359319	3359320	rs3130342	32469254	Matsunaga H	2020-05-29	Circ Genom Precis Med	Transethnic Meta-analysis of Genome-wide Association Studies Identifies Three New Loci and Characterizes Population-specific Differences for Coronary Artery Disease.	Coronary artery disease	15,302 Japanese ancestry cases, 76,014 European and East Asian ancestry cases, 36,140 Japanese ancestry controls, 264,785 European and East Asian ancestry controls	NA	6p21.32	TNXB, ATF6B	rs3130342-C	0.83	3E-9		1.08	[1.06-1.09]	Illumina [5167567] (imputed)	N
610	chr6_dbb_hap3	3359319	3359320	rs3130342	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	6p21.32	TNXB, ATF6B	rs3130342-A	0.149	5E-10		0.126	[0.087-0.165] unit decrease	Affymetrix [~ 11900000] (imputed)	N
610	chr6_dbb_hap3	3359364	3359365	rs1269852	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ISG15	5,349 Icelandic ancestry individuals	NA	6p21.32		rs1269852-C	0.08142	2E-98		0.682855	[0.62-0.75] unit increase	Illumina [7506463] (imputed)	N
610	chr6_dbb_hap3	3359364	3359365	rs1269852	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	6p21.32	NR	rs1269852-G	0.0755467	2E-8		0.067160755	[0.044-0.09] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
610	chr6_dbb_hap3	3359556	3359557	rs9469084	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	6p21.32	ATF6B, TNXB	rs9469084-T	0.065593	5E-11		0.0346535	[0.027-0.043] unit decrease	Affymetrix [93095623] (imputed)	N
610	chr6_dbb_hap3	3362348	3362349	rs8111	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ATF6B	5,359 Icelandic ancestry individuals	NA	6p21.32		rs8111-T	0.2409	7E-30		0.245233	[0.2-0.29] unit increase	Illumina [7506463] (imputed)	N
610	chr6_dbb_hap3	3362348	3362349	rs8111	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	ATF6B	rs8111-T	0.266	1E-15	(Cyclic AMP-dependent transcription factor ATF-6 alpha, ATF6.11277.23.3)	0.22	[0.16-0.28] unit decrease	Affymetrix [10572788] (imputed)	N
610	chr6_dbb_hap3	3362348	3362349	rs8111	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling hurt	372,047 European ancestry individuals	NA	6p21.32	HLA-C	rs8111-T	0.251639	1E-8		5.73	z score increase	NR [10847151] (imputed)	N
610	chr6_dbb_hap3	3362348	3362349	rs8111	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p21.32	ATF6B	rs8111-?	0.6	1E-6	(Turkish)	1.5873016	[1.32-1.92]	Illumina [up to 547389]	N
610	chr6_dbb_hap3	3362473	3362474	rs8283	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TYK2	5,361 Icelandic ancestry individuals	NA	6p21.32		rs8283-G	0.1925	3E-11		0.158998	[0.11-0.21] unit increase	Illumina [7506463] (imputed)	N
610	chr6_dbb_hap3	3362473	3362474	rs8283	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL21	5,363 Icelandic ancestry individuals	NA	6p21.32		rs8283-G	0.1925	1E-29		0.268365	[0.22-0.31] unit increase	Illumina [7506463] (imputed)	N
610	chr6_dbb_hap3	3362473	3362474	rs8283	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FTMT	5,365 Icelandic ancestry individuals	NA	6p21.32		rs8283-G	0.1925	1E-46		0.339863	[0.29-0.39] unit increase	Illumina [7506463] (imputed)	N
610	chr6_dbb_hap3	3362473	3362474	rs8283	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C4A;C4B	5,353 Icelandic ancestry individuals	NA	6p21.32		rs8283-G	0.1925	4E-102		0.479658	[0.44-0.52] unit increase	Illumina [7506463] (imputed)	N
610	chr6_dbb_hap3	3362473	3362474	rs8283	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.32	ATF6B, TNXB	rs8283-G	0.1906439	2E-17	(Complement C4)	0.487	[0.38-0.6] unit increase	Affymetrix [509946]	N
610	chr6_dbb_hap3	3368027	3368028	rs2228628	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ATF6	5,363 Icelandic ancestry individuals	NA	6p21.32		rs2228628-C	0.25	4E-19		0.190713	[0.15-0.23] unit decrease	Illumina [7506463] (imputed)	N
610	chr6_dbb_hap3	3368315	3368316	rs204888	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.32	TNXB, ATF6B, FKBPL	rs204888-T	0.09628887	2E-12	(EA, Complement C4b)	0.5278	[0.38-0.67] unit increase	Affymetrix [509946]	N
610	chr6_dbb_hap3	3373764	3373765	rs204893	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.32		rs204893-T	0.566	3E-36				Affymetrix [10369434] (imputed)	N
610	chr6_dbb_hap3	3373764	3373765	rs204893	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.32		rs204893-T	0.566	1E-56				Affymetrix [10369434] (imputed)	N
610	chr6_dbb_hap3	3373764	3373765	rs204893	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling nervous	373,121 European ancestry individuals	NA	6p21.32	HLA-C	rs204893-T	0.441671	8E-11		6.5	z score decrease	NR [10847151] (imputed)	N
610	chr6_dbb_hap3	3373764	3373765	rs204893	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	6p21.32	intergenic	rs204893-T	0.55833	1E-12		7.076	z score decrease	Illumina [18485882] (imputed)	N
610	chr6_dbb_hap3	3375172	3375173	rs3130288	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p21.32	NR	rs3130288-A	0.12	5E-11		1.16	[1.11-1.22]	Affymetrix [9886854] (imputed)	N
610	chr6_dbb_hap3	3375172	3375173	rs3130288	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p21.32	NR	rs3130288-A	0.12	5E-14			[NR]	Affymetrix [9886854] (imputed)	N
610	chr6_dbb_hap3	3375172	3375173	rs3130288	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in never smokers	8,631 European ancestry cases, 120,544 European ancestry controls	NA	6p21.32	NR	rs3130288-A	0.12	2E-11		1.17	[1.12-1.23]	Affymetrix [9886854] (imputed)	N
610	chr6_dbb_hap3	3375172	3375173	rs3130288	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome)	345 Swedish ancestry cases, 2,025 Swedish ancestry controls	251 European ancestry cases, 4,901 European ancestry controls	6p21.32	CREBL1	rs3130288-A	0.345	4E-66		4.16	[3.54-4.90]	Illumina [118177]	N
610	chr6_dbb_hap3	3375172	3375173	rs3130288	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p21.32	CREBL1	rs3130288-A	0.345	3E-33				Illumina [118177]	N
610	chr6_dbb_hap3	3376782	3376783	rs41268905	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	6p21.32	FKBPL	rs41268905-A	0.1048	4E-11		0.003	[0.002-0.004] unit decrease	Affymetrix [15275733] (imputed)	N
610	chr6_dbb_hap3	3381471	3381472	rs3134963	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	6p21.32	FKBPL, PRRT1	rs3134963-T	0.149	3E-10		0.128	[0.089-0.167] unit decrease	Affymetrix [~ 11900000] (imputed)	N
610	chr6_dbb_hap3	3381847	3381848	rs13211318	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Strep throat	52,487 European ancestry cases, 22,017 European ancestry controls	NA	6p21.32	NR	rs13211318-?	NR	3E-7		0.051	[0.031-0.071] unit increase	Illumina [at least 560000] (imputed)	N
610	chr6_dbb_hap3	3382917	3382918	rs145827824	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.32	NR	rs145827824-G	0.011	2E-16		0.699809	[0.53-0.87] unit increase	Affymetrix [up to 8900000] (imputed)	N
610	chr6_dbb_hap3	3382917	3382918	rs145827824	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.32	NR	rs145827824-G	0.011	1E-8	(women)	0.797658	[0.53-1.07] unit increase	Affymetrix [up to 8900000] (imputed)	N
610	chr6_dbb_hap3	3382917	3382918	rs145827824	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.32	NR	rs145827824-G	0.011	1E-7	(men)	0.57225	[0.36-0.78] unit increase	Affymetrix [up to 8900000] (imputed)	N
610	chr6_dbb_hap3	3386308	3386309	rs3096698	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL18RAP	5,360 Icelandic ancestry individuals	NA	6p21.32		rs3096698-T	0.4309	1E-12		0.134973	[0.098-0.172] unit decrease	Illumina [7506463] (imputed)	N
610	chr6_dbb_hap3	3386308	3386309	rs3096698	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	6p21.32	PRRT1	rs3096698-T	0.3668	6E-15		0.2611	[0.2-0.33] mmHg decrease	Affymetrix [NR] (imputed)	N
610	chr6_dbb_hap3	3389147	3389148	rs204999	23022100	Franceschini N	2012-09-26	Am J Hum Genet	Discovery and fine mapping of serum protein loci through transethnic meta-analysis.	Serum total protein level	Up to 25,539 European ancestry individuals, 10,168 Japanese ancestry individuals	NA		intergenic	rs204999-A	0.74	4E-11		0.0266	[0.019-0.034] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
610	chr6_dbb_hap3	3389147	3389148	rs204999	23022100	Franceschini N	2012-09-26	Am J Hum Genet	Discovery and fine mapping of serum protein loci through transethnic meta-analysis.	Serum total protein level	Up to 25,539 European ancestry individuals, 10,168 Japanese ancestry individuals	NA		intergenic	rs204999-A	0.74	3E-9	(EA)	0.025	[0.017-0.033] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
610	chr6_dbb_hap3	3389147	3389148	rs204999	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA		intergenic	rs204999-G	0.2643	9E-40		2.44	[NR]	Illumina [242824]	N
610	chr6_dbb_hap3	3389682	3389683	rs77619009	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.32		rs77619009-A	0.944	4E-16				Affymetrix [10369434] (imputed)	N
610	chr6_dbb_hap3	3389751	3389752	rs3130277	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	PRRT1	rs3130277-C	NR	2E-8		0.0208014	[0.014-0.028] unit decrease	Affymetrix [323858] (imputed)	N
610	chr6_dbb_hap3	3390191	3390192	rs565981183	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs565981183-CA	0.876	1E-11		1.192	[1.14-1.24]	Illumina [11270530] (imputed)	N
610	chr6_dbb_hap3	3391793	3391794	rs3130279	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL21	5,363 Icelandic ancestry individuals	NA	6p21.32		rs3130279-A	0.207	5E-14		0.174333	[0.13-0.22] unit increase	Illumina [7506463] (imputed)	N
610	chr6_dbb_hap3	3393685	3393686	rs9296009	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	PRRT1	rs9296009-T	0.216	7E-13	(UDP-N-acetylhexosamine pyrophosphorylase, UAP1.13580.2.3)	0.21	[0.15-0.27] unit decrease	Affymetrix [10572788] (imputed)	N
610	chr6_dbb_hap3	3393685	3393686	rs9296009	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	PRRT1	rs9296009-T	0.216	3E-37	(Rac GTPase-activating protein 1, RACGAP1.13587.10.3)	0.37	[0.31-0.43] unit decrease	Affymetrix [10572788] (imputed)	N
610	chr6_dbb_hap3	3393685	3393686	rs9296009	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	PRRT1	rs9296009-T	0.196796488164359	4E-6	(IGP18)	0.1779	[0.1-0.25] unit decrease	Illumina [~ 2500000] (imputed)	N
610	chr6_dbb_hap3	3393685	3393686	rs9296009	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	PRRT1	rs9296009-T	0.19676420855615	4E-6	(IGP25)	0.1773	[0.1-0.25] unit decrease	Illumina [~ 2500000] (imputed)	N
610	chr6_dbb_hap3	3393685	3393686	rs9296009	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	PRRT1	rs9296009-T	0.196432337204109	4E-8	(IGP23)	0.2111	[0.14-0.29] unit decrease	Illumina [~ 2500000] (imputed)	N
610	chr6_dbb_hap3	3394392	3394393	rs28732178	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	6p21.32	NR	rs28732178-?	NR	8E-11		6.496	NR z score decrease	Illumina [at least 830937] (imputed)	N
610	chr6_dbb_hap3	3399070	3399071	rs3131283	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	PRRT1	rs3131283-T	NR	4E-16		0.0353753	[0.027-0.044] unit increase	Affymetrix [323123] (imputed)	N
610	chr6_dbb_hap3	3399887	3399888	rs1053924	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:0_[M+H]1+/Phosphatidylethanolamine_35:0_[M+H]1+/Phosphatidate_37:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	6p21.32		rs1053924-T	NR	3E-10		0.0786544	[0.054-0.103] unit decrease	Affymetrix [87696910] (imputed)	N
610	chr6_dbb_hap3	3401644	3401645	rs3096696	25987655	Fernandez CA	2015-05-18	Blood	Genome-wide analysis links NFATC2 with asparaginase hypersensitivity.	Asparaginase hypersensitivity in acute lymphoblastic leukemia	3,126 child cases	182 child cases	6p21.32	PPT2	rs3096696-A		4E-6		1.478		Affymetrix [NR]	N
610	chr6_dbb_hap3	3406680	3406681	rs3134950	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:0_[M+H]1+/Phosphatidylethanolamine_35:0_[M+H]1+/Phosphatidate_37:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	6p21.32		rs3134950-C	NR	3E-16		0.100569	[0.076-0.125] unit decrease	Affymetrix [87696910] (imputed)	N
610	chr6_dbb_hap3	3406680	3406681	rs3134950	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	6p21.32	EGFL8	rs3134950-A	0.622	1E-8		0.01510972	[0.0099-0.0203] unit decrease	Affymetrix [~ 11515000] (imputed)	N
610	chr6_dbb_hap3	3406680	3406681	rs3134950	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	6p21.32	PPT2	rs3134950-A	0.624	1E-10		0.0079	[0.0055-0.0103] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
610	chr6_dbb_hap3	3406680	3406681	rs3134950	24823311	Guan W	2014-05-13	Circ Cardiovasc Genet	Genome-wide association study of plasma N6 polyunsaturated fatty acids within the cohorts for heart and aging research in genomic epidemiology consortium.	Plasma omega-6 polyunsaturated fatty acid levels (adrenic acid)	8,631 European ancestry individuals	NA	6p21.32	AGPAT1, PPT2	rs3134950-A	0.625	6E-6		0.01	[NR] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
610	chr6_dbb_hap3	3406680	3406681	rs3134950	23362303	Wu JH	2013-01-29	Circ Cardiovasc Genet	Genome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortium.	Oleic acid (18:1n-9) levels	8,961 European ancestry individuals		6p21.32	EGFL8, AGPAT1, PPT2	rs3134950-A	NR	1E-6		0.0945	unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
611	chr6_dbb_hap3	3484020	3484021	rs9279532	31577861	Dai J	2019-10-31	Int J Cancer	Genome-wide association study of INDELs identified four novel susceptibility loci associated with lung cancer risk.	Lung cancer	20,871 European ancestry cases, 15,971 European ancestry controls, 2,331 Chinese ancestry cases, 3,077 Chinese ancestry controls	NA	6p21.32	NOTCH4	rs9279532-D	0.12	3E-7		1.11	[1.07-0.94]	Illumina [484196]	N
611	chr6_dbb_hap3	3484082	3484083	rs28732180	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p21.32	NR	rs28732180-?	NR	1E-15		0.1765	[0.13-0.22] unit increase	Illumina [at least 560000] (imputed)	N
611	chr6_dbb_hap3	3484245	3484246	rs549182	24837172	Juyal G	2014-05-16	Gut	Genome-wide association scan in north Indians reveals three novel HLA-independent risk loci for ulcerative colitis.	Ulcerative colitis	603 North Indian ancestry cases, 622 North Indian ancestry controls	733 North Indian ancestry cases, 1,148 North Indian ancestry controls	6p21.32	NOTCH4	rs549182-A	0.11	8E-10		1.59	[1.37-1.85]	Illumina [480391]	N
611	chr6_dbb_hap3	3484310	3484311	rs9267911	23266558	Yamazaki K	2012-12-21	Gastroenterology	A genome-wide association study identifies 2 susceptibility Loci for Crohn's disease in a Japanese population.	Crohn's disease	372 Japanese ancestry cases,3,389 Japanese ancestry controls	Up to 1,151 Japanese ancestry cases, up to 15,800 Japanese ancestry controls	6p21.32	PBX2, NOTCH4	rs9267911-T	0.479	3E-7		1.5	[1.29-1.76]	Illumina [4929034] (imputed)	N
611	chr6_dbb_hap3	3485688	3485689	rs3134938	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p21.32	NOTCH4	rs3134938-C	0.832	8E-7		0.076	[0.047-0.105] unit decrease	Affymetrix, Illumina [7374092] (imputed)	N
611	chr6_dbb_hap3	3485739	3485740	rs3134937	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	NOTCH4	rs3134937-T	NR	7E-9		0.0212317	[0.014-0.028] unit decrease	Affymetrix [323858] (imputed)	N
611	chr6_dbb_hap3	3486381	3486382	rs3130304	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	NOTCH4	rs3130304-A	NR	4E-8		0.0203511	[0.013-0.028] unit increase	Affymetrix [323123] (imputed)	N
611	chr6_dbb_hap3	3486593	3486594	rs416352	30294719	Zeng Y	2018-08-24	JAMA Netw Open	Sex Differences in Genetic Associations With Longevity.	Longevity	564 Han Chinese ancestry male centenarian cases, 1,614 Han Chinese ancestry female centenarian cases, 773 Han Chinese ancestry male middle-aged controls, 1,526 Han Chinese ancestry female middle-aged controls	NA	6p21.32	NOTCH4	rs416352-?	0.51	8E-6	(female)	1.261	[1.14-1.40]	Illumina [5595657] (imputed)	N
611	chr6_dbb_hap3	3487525	3487526	rs424232	23936387	Ostensson M	2013-08-02	PLoS One	A possible mechanism behind autoimmune disorders discovered by genome-wide linkage and association analysis in celiac disease.	Celiac disease	206 European ancestry trios	NA	6p21.32	HLA	rs424232-C		5E-21				Illumina [944512] (imputed)	N
611	chr6_dbb_hap3	3488446	3488447	rs186298790	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	6p21.32	NR	rs186298790-?	NR	4E-11	(MIC-A)	3.61094	[2.54-4.68] unit increase	Illumina [11901634] (imputed)	N
611	chr6_dbb_hap3	3488527	3488528	rs570559246	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Treatment or medication use - sulfasalazine (UKB data field 20003_1140909702)	866 European ancestry cases, 455,410 European ancestry controls	NA	6p21.32		rs570559246-C	0.003586	7E-10		3.33	[2.27-4.39] unit increase	NR [11842647] (imputed)	N
611	chr6_dbb_hap3	3488652	3488653	rs380911	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.32	Intergenic	rs380911-?		9E-6		1.04	[1.02-1.06]	Illumina [7645193] (imputed)	N
611	chr6_dbb_hap3	3488652	3488653	rs380911	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.32	Intergenic	rs380911-?		3E-6		1.51	[1.27-1.80]	Illumina [7645193] (imputed)	N
611	chr6_dbb_hap3	3489060	3489061	rs507778	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	6p21.32	intergenic	rs507778-T	0.3256	1E-24		0.03915988	[0.032-0.047] unit decrease	Affymetrix [~ 2500000] (imputed)	N
611	chr6_dbb_hap3	3489060	3489061	rs507778	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	6p21.32	intergenic	rs507778-T	0.3257	2E-29		0.04307319	[0.036-0.051] unit decrease	Affymetrix [~ 2500000] (imputed)	N
611	chr6_dbb_hap3	3489550	3489551	rs28732181	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Strep throat	52,487 European ancestry cases, 22,017 European ancestry controls	NA	6p21.32	NR	rs28732181-?	NR	6E-6		0.0381	[0.022-0.055] unit decrease	Illumina [at least 560000] (imputed)	N
611	chr6_dbb_hap3	3489998	3489999	rs419132	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	Triglycerides	up to 62,166 European ancestry individuals	NA	6p21.32	HLA-area	rs419132-G	0.2	5E-12		0.056	[0.04-0.072] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
611	chr6_dbb_hap3	3490283	3490284	rs412657	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6p21.32		rs412657-G	0.377896	3E-19		0.021442138	[0.017-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
611	chr6_dbb_hap3	3490515	3490516	rs411326	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	6p21.32		rs411326-C	0.728	4E-13				Affymetrix [10369434] (imputed)	N
611	chr6_dbb_hap3	3491851	3491852	rs9267951	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.32		rs9267951-C	0.729	9E-29				Affymetrix [10369434] (imputed)	N
611	chr6_dbb_hap3	3491851	3491852	rs9267951	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p21.32		rs9267951-C	0.729	5E-17				Affymetrix [10369434] (imputed)	N
611	chr6_dbb_hap3	3491890	3491891	rs9267952	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.32		rs9267952-G	0.573	6E-23				Affymetrix [10369434] (imputed)	N
611	chr6_dbb_hap3	3491890	3491891	rs9267952	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	XXbac-BPG154L12.4	rs9267952-A	NR	5E-14		0.0214967	[0.016-0.027] unit increase	Affymetrix [319769] (imputed)	N
611	chr6_dbb_hap3	3491890	3491891	rs9267952	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	XXbac-BPG154L12.4	rs9267952-A	NR	2E-13		0.0209537	[0.015-0.027] unit increase	Affymetrix [319769] (imputed)	N
611	chr6_dbb_hap3	3491890	3491891	rs9267952	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	XXbac-BPG154L12.4	rs9267952-A	NR	5E-12		0.0199663	[0.014-0.026] unit increase	Affymetrix [321169] (imputed)	N
611	chr6_dbb_hap3	3491902	3491902	rs35161164	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	XXbac-BPG154L12.4	rs35161164-CG	NR	1E-11		0.0195502	[0.014-0.025] unit decrease	Affymetrix [321016] (imputed)	N
611	chr6_dbb_hap3	3491902	3491902	rs35161164	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	XXbac-BPG154L12.4	rs35161164-CG	NR	5E-15		0.0245369	[0.018-0.031] unit decrease	Affymetrix [323123] (imputed)	N
611	chr6_dbb_hap3	3492053	3492054	rs10456404	33119750	Vergara C	2020-10-29	J Infect Dis	A multi-ancestry sex stratified genome-wide association study of spontaneous clearance of hepatitis C virus.	Hepatitis C (spontaneous viral clearance)	239 African ancestry male cases, 1,184 African ancestry male controls, 206 African ancestry female cases, 572 African ancestry female controls, 489 European ancestry male cases, 703 European ancestry male controls, 212 European ancestry female cases, 332 European ancestry female controls, 91 Hispanic male cases, 197 Hispanic male controls, 82 Hispanic female cases, 116 Hispanic female controls	NA	6p21.32	NR	rs10456404-C	0.13	2E-7	(female)	1.89	[NR]	Illumina [5730693] (imputed)	N
611	chr6_dbb_hap3	3492248	3492249	rs9267954	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	XXbac-BPG154L12.4	rs9267954-T	NR	2E-12		0.022421	[0.016-0.029] unit increase	Affymetrix [319769] (imputed)	N
611	chr6_dbb_hap3	3492248	3492249	rs9267954	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	XXbac-BPG154L12.4	rs9267954-T	NR	3E-12		0.0221835	[0.016-0.028] unit increase	Affymetrix [319769] (imputed)	N
611	chr6_dbb_hap3	3492248	3492249	rs9267954	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	XXbac-BPG154L12.4	rs9267954-T	NR	2E-11		0.0234019	[0.017-0.03] unit decrease	Affymetrix [323123] (imputed)	N
611	chr6_dbb_hap3	3492248	3492249	rs9267954	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	XXbac-BPG154L12.4	rs9267954-T	NR	1E-11		0.0218043	[0.015-0.028] unit increase	Affymetrix [321169] (imputed)	N
611	chr6_dbb_hap3	3492406	3492407	rs454748	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	XXbac-BPG154L12.4	rs454748-A	NR	3E-11		0.0188397	[0.013-0.024] unit decrease	Affymetrix [321016] (imputed)	N
611	chr6_dbb_hap3	3492406	3492407	rs454748	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	XXbac-BPG154L12.4	rs454748-A	NR	5E-15		0.0242475	[0.018-0.03] unit decrease	Affymetrix [323123] (imputed)	N
611	chr6_dbb_hap3	3496288	3496289	rs6936204	25096241	Keller MF	2014-08-05	Hum Mol Genet	Trans-ethnic meta-analysis of white blood cell phenotypes.	Neutrophil count	9,802 Japanese ancestry individuals, 16,550 European ancestry individuals, 7,391 African American individuals	NA	6p21.32	AK123889	rs6936204-C	0.585	6E-6	(EA)	0.02	[0.012-0.028] unit increase	Illumina [NR] (imputed)	N
611	chr6_dbb_hap3	3496288	3496289	rs6936204	25096241	Keller MF	2014-08-05	Hum Mol Genet	Trans-ethnic meta-analysis of white blood cell phenotypes.	Neutrophil count	9,802 Japanese ancestry individuals, 16,550 European ancestry individuals, 7,391 African American individuals	NA	6p21.32	AK123889	rs6936204-?	NR	3E-8		0.0196	[0.013-0.026] unit decrease	Illumina [NR] (imputed)	N
611	chr6_dbb_hap3	3496428	3496429	rs9267972	24925725	Chung SA	2014-06-12	J Am Soc Nephrol	Lupus nephritis susceptibility loci in women with systemic lupus erythematosus.	Lupus nephritis in systemic lupus erythematosus	588 European ancestry cases, 1,412 European ancestry controls	NA	6p21.32	C6orf10, NOTCh4	rs9267972-A	NR	2E-6	(Dominant)	1.85	[1.46,2.33]	Affymetrix, Illumina [1621689] (imputed)	N
611	chr6_dbb_hap3	3496609	3496610	rs3115574	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p21.32	NR	rs3115574-?	NR	2E-13		0.0942	[0.069-0.119] unit increase	Illumina [at least 560000] (imputed)	N
611	chr6_dbb_hap3	3497042	3497043	rs2894240	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	XXbac-BPG154L12.4	rs2894240-A	NR	5E-12		0.0197637	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
611	chr6_dbb_hap3	3497042	3497043	rs2894240	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	XXbac-BPG154L12.4	rs2894240-A	NR	2E-11		0.0191638	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
611	chr6_dbb_hap3	3497042	3497043	rs2894240	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	XXbac-BPG154L12.4	rs2894240-A	NR	4E-11		0.0191969	[0.014-0.025] unit increase	Affymetrix [321169] (imputed)	N
611	chr6_dbb_hap3	3498039	3498040	rs3115573	20595679	Feehally J	2010-07-01	J Am Soc Nephrol	HLA has strongest association with IgA nephropathy in genome-wide analysis.	Nephropathy	187 European ancestry child cases, 244 European ancestry cases, 4,980 European ancestry controls	NA	6p21.32	intergenic	rs3115573-?	NR	1E-9		1.62	[1.39-1.90]	Illumina [286200]	N
611	chr6_dbb_hap3	3498185	3498186	rs9296015	21779181	Gorlova O	2011-07-14	PLoS Genet	Identification of novel genetic markers associated with clinical phenotypes of systemic sclerosis through a genome-wide association strategy.	Systemic sclerosis	2,296 European ancestry cases, 5,172 European ancestry controls	3,175 European ancestry cases, 4,210 European ancestry controls	6p21.32	NOTCH4	rs9296015-?	0.81	1E-8	(ATA positive)	1.85	[1.49-2.27]	Illumina [NR] (imputed)	N
611	chr6_dbb_hap3	3498185	3498186	rs9296015	21505073	Terao C	2011-04-19	Hum Mol Genet	The human AIRE gene at chromosome 21q22 is a genetic determinant for the predisposition to rheumatoid arthritis in Japanese population.	Rheumatoid arthritis	1,247 Japanese ancestry cases, 1,486 Japanese ancestry controls	4,168 Japanese ancestry cases, 5,003 Japanese ancestry controls	6p21.32	HLA locus	rs9296015-?	NR	2E-38				Illumina [241523]	N
611	chr6_dbb_hap3	3500748	3500749	rs9267995	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	XXbac-BPG154L12.4	rs9267995-G	NR	2E-9		0.0171285	[0.012-0.023] unit decrease	Affymetrix [321114] (imputed)	N
611	chr6_dbb_hap3	3500748	3500749	rs9267995	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	XXbac-BPG154L12.4	rs9267995-G	NR	1E-21		0.027192	[0.022-0.033] unit decrease	Affymetrix [321169] (imputed)	N
611	chr6_dbb_hap3	3500748	3500749	rs9267995	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	6p21.32	NR	rs9267995-A	0.548939	3E-14		0.0512585	[0.038-0.065] unit decrease	Affymetrix [17914406] (imputed)	N
611	chr6_dbb_hap3	3500764	3500765	rs9296018	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.32		rs9296018-A	0.81	6E-10				Affymetrix [10369434] (imputed)	N
611	chr6_dbb_hap3	3501743	3501744	rs139197261	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6p21.32	XXbac-BPG154L12.4	rs139197261-G	0.015037	2E-10		0.05895812	[0.041-0.077] unit decrease	Affymetrix [93095623] (imputed)	N
611	chr6_dbb_hap3	3502485	3502486	rs3130320	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	XXbac-BPG154L12.4	rs3130320-T	NR	2E-25		0.030089	[0.024-0.036] unit decrease	Affymetrix [319769] (imputed)	N
611	chr6_dbb_hap3	3502485	3502486	rs3130320	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	XXbac-BPG154L12.4	rs3130320-T	NR	1E-15		0.0257005	[0.019-0.032] unit decrease	Affymetrix [323858] (imputed)	N
611	chr6_dbb_hap3	3502485	3502486	rs3130320	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	XXbac-BPG154L12.4	rs3130320-T	NR	5E-24		0.0292129	[0.024-0.035] unit decrease	Affymetrix [319769] (imputed)	N
611	chr6_dbb_hap3	3502485	3502486	rs3130320	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	XXbac-BPG154L12.4	rs3130320-T	NR	6E-14		0.0240661	[0.018-0.03] unit decrease	Affymetrix [127266] (imputed)	N
611	chr6_dbb_hap3	3502485	3502486	rs3130320	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	XXbac-BPG154L12.4	rs3130320-T	NR	7E-18		0.0248771	[0.019-0.031] unit increase	Affymetrix [321016] (imputed)	N
611	chr6_dbb_hap3	3502485	3502486	rs3130320	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	XXbac-BPG154L12.4	rs3130320-T	NR	3E-23		0.0312285	[0.025-0.037] unit increase	Affymetrix [323123] (imputed)	N
611	chr6_dbb_hap3	3502485	3502486	rs3130320	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.32	NOTCH4, C6orf10	rs3130320-C	0.6281	7E-8	(EA)	0.0224	[0.014-0.03] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
611	chr6_dbb_hap3	3502485	3502486	rs3130320	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.32	BTNL2	rs3130320-C	0.6281	6E-6	(EA, men)	0.0276	[0.016-0.04] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
611	chr6_dbb_hap3	3502485	3502486	rs3130320	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6p21.32	BTNL2	rs3130320-C	0.6281	6E-9	(EA)	0.0271	[0.018-0.036] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
611	chr6_dbb_hap3	3502485	3502486	rs3130320	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6p21.32	BTNL2	rs3130320-C	0.6267	9E-6	(EA, men)	0.0304	[0.017-0.044] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
611	chr6_dbb_hap3	3502485	3502486	rs3130320	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.32	NOTCH4, C6orf10	rs3130320-?	0.6281	5E-8	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
611	chr6_dbb_hap3	3502485	3502486	rs3130320	21408207	Chung SA	2011-03-03	PLoS Genet	Differential genetic associations for systemic lupus erythematosus based on anti-dsDNA autoantibody production.	Systemic lupus erythematosus	811 anti-dsDNA positive European ancestry cases, 906 anti-dsDNA negative European ancestry cases, 4,813 European ancestry controls	NA	6p21.32	NOTCH4, C6orf10	rs3130320-T	0.39	3E-6	(case-only)	1.39	[1.21-1.60]	Illumina [421318] (imputed)	N
611	chr6_dbb_hap3	3505583	3505584	rs112845108	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	XXbac-BPG154L12.4	rs112845108-T	NR	3E-8		0.0203101	[0.013-0.027] unit increase	Affymetrix [323123] (imputed)	N
611	chr6_dbb_hap3	3505711	3505712	rs9268026	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IGF2R	5,361 Icelandic ancestry individuals	NA	6p21.32		rs9268026-G	0.07788	3E-13		0.252335	[0.18-0.32] unit increase	Illumina [7506463] (imputed)	N
611	chr6_dbb_hap3	3508469	3508470	rs3132969	29534301	Nishida N	2018-03-13	Hepatology	Key HLA-DRB1-DQB1 haplotypes and role of the BTNL2 gene for response to a hepatitis B vaccine.	Response to hepatitis B vaccine	107 Japanese ancestry low responder individuals, 351 Japanese ancestry intermediate responder individuals, 735 Japanese ancestry high responder individuals	NA	6p21.32	OXA1L	rs3132969-?		2E-6		0.147	unit decrease	Affymetrix [427664]	N
611	chr6_dbb_hap3	3509583	3509584	rs3132972	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Perceived unattractiveness to mosquitoes	16,576 European ancestry individuals	NA	6p21.32	intergenic	rs3132972-G	NR	2E-6		0.114743	[0.067-0.162] unit decrease	Illumina [7433384] (imputed)	N
611	chr6_dbb_hap3	3509583	3509584	rs3132972	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.32	Intergenic	rs3132972-G	NR	8E-9		0.0190698	[0.013-0.026] unit decrease	Illumina [13520550] (imputed)	N
611	chr6_dbb_hap3	3511880	3511881	rs9268072	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Hepatitis B	1,425 European ancestry cases, 218,180 European ancestry controls	NA	6p21.32	NR	rs9268072-?	NR	1E-6		0.2518	[0.15-0.36] unit increase	Illumina [at least 560000] (imputed)	N
611	chr6_dbb_hap3	3523854	3523855	rs3130340	18445777	Styrkarsdottir U	2008-04-29	N Engl J Med	Multiple genetic loci for bone mineral density and fractures.	Bone mineral density (spine)	5,861 European ancestry individuals	7,925 European ancestry individuals	6p21.32	MHC, C6orf10	rs3130340-T	0.79	1E-7		0.1	[0.06-0.13] s.d. decrease	Illumina [301019]	N
611	chr6_dbb_hap3	3526272	3526273	rs145568234	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Ulcerative colitis	5,371 European ancestry cases, 412,561 European ancestry controls, 314 East Asian ancestry cases, 178,375 East Asian ancestry controls	NA	6p21.32		rs145568234-G	NR	5E-35		1.1793	[0.99-1.37] unit increase	Affymetrix, Illumina [25840981] (imputed)	N
611	chr6_dbb_hap3	3533504	3533504	rs9281714	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs9281714-T	0.974	2E-6		1.419	[1.28-1.56]	Illumina [11270530] (imputed)	N
611	chr6_dbb_hap3	3534757	3534758	rs184614409	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	6p21.32	NR	rs184614409-?	NR	8E-10		6.14	NR z score decrease	Illumina [at least 830937] (imputed)	N
611	chr6_dbb_hap3	3536811	3536812	rs926070	24292274	Speedy HE	2013-12-01	Nat Genet	A genome-wide association study identifies multiple susceptibility loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	1,739 European ancestry cases, 5,199 European ancestry controls	1,144 European ancestry cases, 3,151 European ancestry controls	6p21.32	HLA	rs926070-A	0.66	4E-8		1.27	[NR]	Illumina [450000] (imputed)	N
612	chr6_dbb_hap3	3540498	3540499	rs7775397	33909500	Moll M	2021-04-28	Am J Physiol Lung Cell Mol Physiol	A Systematic Analysis of Protein-altering Exonic Variants in Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease	up to 31,465 European ancestry cases, up to 203,688 European ancestry controls, up to 1,413 African ancestry cases, up to 6,080 African ancestry controls, up to 287 East Asian ancestry cases, up to 7,484 East Asian ancestry controls, up to 61 Hispanic cases, up to 613 Hispanic controls	NA	6p21.32	C6orf10	rs7775397-G	0.13	3E-13		1.12	[1.08 -1.15]	Illumina [at least 109036]	N
612	chr6_dbb_hap3	3540498	3540499	rs7775397	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p21.32	C6orf10	rs7775397-G		1E-35		0.042	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
612	chr6_dbb_hap3	3540498	3540499	rs7775397	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.32	c6orf10	rs7775397-G	0.1139	5E-71		3.83	[NR]	Illumina [242824]	N
612	chr6_dbb_hap3	3545128	3545129	rs114355928	32534018	Liu X	2020-06-10	Brain Behav Immun	Genetic factors underlying the bidirectional relationship between autoimmune and mental disorders - findings from a Danish population-based study.	Autoimmune traits	1,383 Danish ancestry cases, 62,656 Danish ancestry controls	NA	6p21.32	NR	rs114355928-T	0.018	2E-8		2.02	[1.62-2.53]	NR [7721839] (imputed)	N
612	chr6_dbb_hap3	3545557	3545558	rs9268155	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	6p21.32	NR	rs9268155-?	NR	1E-10		0.073	[0.051-0.095] unit decrease	Illumina [at least 560000] (imputed)	N
612	chr6_dbb_hap3	3551428	3551429	rs56036302	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Sjogren's syndrome	303 East Asian ancestry cases, 175,599 East Asian ancestry controls	NA	6p21.32		rs56036302-T	0.200590293	6E-10		0.6675887	[0.46-0.88] unit increase	Illumina [13429612] (imputed)	N
612	chr6_dbb_hap3	3551428	3551429	rs56036302	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Autoimmune hepatitis	85 East Asian ancestry cases, 166,529 East Asian ancestry controls	NA	6p21.32		rs56036302-T	0.200204228	7E-9		1.2431419	[0.82-1.66] unit increase	Illumina [13427809] (imputed)	N
612	chr6_dbb_hap3	3553036	3553037	rs6457536	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs6457536-G	NR	5E-11		0.0222803	[0.016-0.029] unit decrease	Affymetrix [321169] (imputed)	N
612	chr6_dbb_hap3	3555555	3555556	rs28366178	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	6p21.32	C6orf10	rs28366178-T	NR	9E-8		0.0353278	[0.022-0.048] unit increase	Illumina [13519193] (imputed)	N
612	chr6_dbb_hap3	3557906	3557907	rs9268199	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	C6orf10	rs9268199-G	NR	2E-8		0.0203912	[0.013-0.028] unit decrease	Affymetrix [319769] (imputed)	N
612	chr6_dbb_hap3	3557906	3557907	rs9268199	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs9268199-G	NR	3E-8		0.0201935	[0.013-0.027] unit decrease	Affymetrix [319769] (imputed)	N
612	chr6_dbb_hap3	3557906	3557907	rs9268199	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs9268199-G	NR	2E-8		0.0207992	[0.014-0.028] unit decrease	Affymetrix [321169] (imputed)	N
612	chr6_dbb_hap3	3557906	3557907	rs9268199	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.32	C6orf10	rs9268199-G	NR	2E-8	(women)	0.0327867	[0.021-0.044] unit increase	Illumina [13520550] (imputed)	N
612	chr6_dbb_hap3	3558063	3558064	rs3864302	34116867	Tanaka N	2021-06-02	J Allergy Clin Immunol	Eight novel susceptibility loci and putative causal variants in atopic dermatitis.	Atopic dermatitis	2,597 Japanese ancestry cases, 110,504 Japanese ancestry controls	NA	6p21.32		rs3864302-?	NR	6E-17		0.77	[0.72-0.82]	Illumina [9900441] (imputed)	N
612	chr6_dbb_hap3	3558611	3558612	rs9268202	29534301	Nishida N	2018-03-13	Hepatology	Key HLA-DRB1-DQB1 haplotypes and role of the BTNL2 gene for response to a hepatitis B vaccine.	Response to hepatitis B vaccine	107 Japanese ancestry low responder individuals, 351 Japanese ancestry intermediate responder individuals, 735 Japanese ancestry high responder individuals	NA	6p21.32	C6orf10	rs9268202-?		8E-8		0.168	unit decrease	Affymetrix [427664]	N
612	chr6_dbb_hap3	3558893	3558894	rs6934429	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	C6orf10	rs6934429-T	NR	9E-14		0.0248579	[0.018-0.031] unit decrease	Affymetrix [319769] (imputed)	N
612	chr6_dbb_hap3	3558893	3558894	rs6934429	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs6934429-T	NR	7E-13		0.0239747	[0.017-0.031] unit decrease	Affymetrix [319769] (imputed)	N
612	chr6_dbb_hap3	3560286	3560287	rs74209703	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.32	NR	rs74209703-?	NR	5E-10				Affymetrix [~ 8270000] (imputed)	N
612	chr6_dbb_hap3	3560682	3560683	rs28366179	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	6p21.32	C6orf10	rs28366179-A	0.1646	3E-21		0.04564547	[0.036-0.055] unit increase	Affymetrix [~ 2500000] (imputed)	N
612	chr6_dbb_hap3	3561337	3561338	rs2395141	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs2395141-?	NR	3E-10				Affymetrix [~ 8270000] (imputed)	N
612	chr6_dbb_hap3	3562123	3562124	rs6910071	20453842	Stahl EA	2010-05-09	Nat Genet	Genome-wide association study meta-analysis identifies seven new rheumatoid arthritis risk loci.	Rheumatoid arthritis	5,539 European ancestry cases, 20,169 European ancestry controls	6,768 European ancestry cases, 8,806 European ancestry controls	6p21.32	HLA-DRB1	rs6910071-G	0.22	1E-299		2.88	[2.73-3.03]	Affymetrix, Illumina [~ 2716259] (imputed)	N
612	chr6_dbb_hap3	3565954	3565955	rs2022542	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	6p21.32	C6orf10	rs2022542-G	0.0582	2E-52		0.1169749	[0.1-0.13] unit increase	Affymetrix [~ 2500000] (imputed)	N
612	chr6_dbb_hap3	3566597	3566598	rs2746115	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	6p21.32	NR	rs2746115-?	NR	8E-9				Affymetrix [~ 8270000] (imputed)	N
612	chr6_dbb_hap3	3572850	3572851	rs2395143	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	C6orf10, HNRNPA1P2	rs2395143-G	NR	2E-10		0.0215226	[0.015-0.028] unit decrease	Affymetrix [323123] (imputed)	N
612	chr6_dbb_hap3	3574701	3574704	rs759777208	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	C6orf10	rs759777208-CT	NR	3E-12		0.0275667	[0.02-0.035] unit decrease	Affymetrix [323858] (imputed)	N
612	chr6_dbb_hap3	3574701	3574704	rs759777208	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	C6orf10	rs759777208-CT	NR	2E-11		0.0265095	[0.019-0.034] unit decrease	Affymetrix [127266] (imputed)	N
612	chr6_dbb_hap3	3574701	3574704	rs759777208	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	C6orf10	rs759777208-CT	NR	4E-8		0.0212618	[0.014-0.029] unit increase	Affymetrix [323123] (imputed)	N
612	chr6_dbb_hap3	3574701	3574704	rs759777208	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p21.32	C6orf10	rs759777208-CT	NR	2E-8		0.0218536	[0.014-0.03] unit decrease	Affymetrix [323858] (imputed)	N
612	chr6_dbb_hap3	3575018	3575019	rs9268249	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	C6orf10	rs9268249-A	NR	5E-8		0.015398	[0.0099-0.0209] unit decrease	Affymetrix [321016] (imputed)	N
612	chr6_dbb_hap3	3575018	3575019	rs9268249	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	C6orf10	rs9268249-A	NR	7E-15		0.0239145	[0.018-0.03] unit decrease	Affymetrix [323123] (imputed)	N
612	chr6_dbb_hap3	3575148	3575149	rs6913664	34785669	Grosche S	2021-11-16	Nat Commun	Rare variant analysis in eczema identifies exonic variants in DUSP1, NOTCH4 and SLC9A4.	Eczema	20,016 European ancestry cases, 380,433 European ancestry controls	NA	6p21.32		rs6913664-T	0.4549	1E-15		0.91		Affymetrix, Illumina [9397031] (imputed)	N
612	chr6_dbb_hap3	3575152	3575153	rs9268251	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	C6orf10	rs9268251-A	NR	7E-11		0.0216525	[0.015-0.028] unit decrease	Affymetrix [319769] (imputed)	N
612	chr6_dbb_hap3	3575152	3575153	rs9268251	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs9268251-A	NR	3E-10		0.0208763	[0.014-0.027] unit decrease	Affymetrix [319769] (imputed)	N
612	chr6_dbb_hap3	3575152	3575153	rs9268251	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs9268251-A	NR	5E-10		0.0208582	[0.014-0.027] unit decrease	Affymetrix [321169] (imputed)	N
612	chr6_dbb_hap3	3578730	3578731	rs145396511	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs145396511-T	0.989	5E-9	(conditional)	1.574	[1.42-1.72]	Illumina [11270530] (imputed)	N
612	chr6_dbb_hap3	3580080	3580081	rs3129960	33106546	Johnson TA	2020-10-26	J Hum Genet	Association of an IGHV3-66 gene variant with Kawasaki disease.	Kawasaki disease	1,276 East Asian ancestry cases, 5,086 East Asian ancestry controls	2,152 East Asian ancestry cases, 2,751 East Asian ancestry controls	6p21.32	C6orf10, LOC101929163	rs3129960-G	NR	7E-13		0.73	[0.67-0.80]	Affymetrix, Illumina [6265045] (imputed)	N
612	chr6_dbb_hap3	3580698	3580699	rs115378818	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.32	C6orf10	rs115378818-T	0.0143760000000001	3E-49		0.16935384	[0.15-0.19] unit decrease	Affymetrix [93095623] (imputed)	N
612	chr6_dbb_hap3	3581653	3581654	rs1265757	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p21.32	C6orf10	rs1265757-A	0.343	1E-33				Illumina [118177]	N
612	chr6_dbb_hap3	3584509	3584510	rs78546106	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs78546106-?	NR	6E-11				Affymetrix [~ 8270000] (imputed)	N
612	chr6_dbb_hap3	3584929	3584930	rs926592	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p21.32	TSBP1	rs926592-C	0.658	6E-6		0.059	[0.034-0.084] unit increase	Affymetrix, Illumina [7374092] (imputed)	N
612	chr6_dbb_hap3	3585250	3585251	rs3129900	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (multivariate analysis)	477,968 European ancestry individuals	NA	6p21.32	C6orf10	rs3129900-G	0.171	7E-17		0.05	[0.038-0.062] unit decrease	NR [NR] (imputed)	N
612	chr6_dbb_hap3	3585250	3585251	rs3129900	20639878	Singer JB	2010-07-18	Nat Genet	A genome-wide study identifies HLA alleles associated with lumiracoxib-related liver injury.	Lumiracoxib-related liver injury	31 European ancestry cases, 3 Hispanic cases, 1 case, 176 European, Hispanic and other ancestry controls	79 European ancestry cases, 16 Hispanic ancestry cases, 1 case, 405 European, Hispanic and other ancestry controls	6p21.32	HLA-DRB1	rs3129900-?	0.105	7E-25		7.5	[5.0-11.3]	Affymetrix [682386]	N
612	chr6_dbb_hap3	3585361	3585362	rs9368716	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	C6orf10	rs9368716-A	NR	4E-17		0.0234977	[0.018-0.029] unit increase	Affymetrix [319769] (imputed)	N
612	chr6_dbb_hap3	3585361	3585362	rs9368716	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs9368716-A	NR	1E-16		0.0231755	[0.018-0.029] unit increase	Affymetrix [319769] (imputed)	N
612	chr6_dbb_hap3	3585361	3585362	rs9368716	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs9368716-A	NR	4E-9		0.0166452	[0.011-0.022] unit increase	Affymetrix [321114] (imputed)	N
612	chr6_dbb_hap3	3585361	3585362	rs9368716	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs9368716-A	NR	4E-17		0.023828	[0.018-0.029] unit increase	Affymetrix [321169] (imputed)	N
612	chr6_dbb_hap3	3588180	3588181	rs9469099	23042114	Hirota T	2012-10-07	Nat Genet	Genome-wide association study identifies eight new susceptibility loci for atopic dermatitis in the Japanese population.	Atopic dermatitis	1,472 Japanese ancestry cases, 7,971 Japanese ancestry controls	1,856 Japanese ancestry cases, 7,021 Japanese ancestry controls	6p21.32	C6orf10	rs9469099-G	0.909	5E-19		1.61	[1.44-1.80]	Illumina [606164]	N
612	chr6_dbb_hap3	3590135	3590136	rs2849018	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Diastolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	6p21.32	C6orf10	rs2849018-C	0.6531	2E-17		0.3443	[0.26-0.42] mmHg increase	Affymetrix [NR] (imputed)	N
612	chr6_dbb_hap3	3590731	3590732	rs3132954	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.32	NR	rs3132954-?	NR	3E-11				Affymetrix [~ 8270000] (imputed)	N
612	chr6_dbb_hap3	3592926	3592927	rs1265764	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	C6orf10	rs1265764-A	NR	2E-8		0.0409576	[0.027-0.055] unit decrease	Affymetrix [323858] (imputed)	N
612	chr6_dbb_hap3	3592926	3592927	rs1265764	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	C6orf10	rs1265764-A	NR	1E-8		0.0407492	[0.027-0.055] unit increase	Affymetrix [323123] (imputed)	N
612	chr6_dbb_hap3	3592926	3592927	rs1265764	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.32	C6orf10, XXbac-BPG154L12.5	rs1265764-A	0.0414	7E-7		0.1177	[0.071-0.164] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
612	chr6_dbb_hap3	3594179	3594180	rs78461719	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	6p21.32	NR	rs78461719-T	0.03388599999999997	1E-8		0.0314455	[0.022-0.041] unit increase	Affymetrix [16578495] (imputed)	N
612	chr6_dbb_hap3	3594653	3594654	rs910049	23321320	Urabe Y	2013-01-12	J Hepatol	A genome-wide association study of HCV-induced liver cirrhosis in the Japanese population identifies novel susceptibility loci at the MHC region.	Hepatitis C induced liver cirrhosis	682 Japanese ancestry cases, 1,045 Japanese ancestry controls	936 Japanese ancestry cases, 3,809 Japanese ancestry controls	6p21.32	C6orf10	rs910049-A	0.142	9E-11		1.46	[1.28-1.62]	Illumina [431618]	N
612	chr6_dbb_hap3	3598557	3598558	rs9268301	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6p21.32	C6orf10	rs9268301-A	0.438	2E-6	(Diet carbohydrate )	0.03	[NR] g/d increase	Illumina [899892]	N
612	chr6_dbb_hap3	3600389	3600390	rs368529276	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs368529276-A	0.961	4E-19		2.522	[2.32-2.72]	Illumina [11270530] (imputed)	N
612	chr6_dbb_hap3	3600470	3600471	rs2395148	18576341	Behrens EM	2008-06-24	Arthritis Rheum	Association of the TRAF1-C5 locus on chromosome 9 with juvenile idiopathic arthritis.	Arthritis (juvenile idiopathic)	67 European ancestry cases, 1,952 European ancestry controls, 63 cases	NA	6p21.32	HLA-DRB1	rs2395148-?	NR	2E-10		5.37	[3.02-9.56]	Illumina [524684]	N
612	chr6_dbb_hap3	3604288	3604289	rs13196329	29196614	Sud A	2017-12-01	Nat Commun	Genome-wide association study of classical Hodgkin lymphoma identifies key regulators of disease susceptibility.	Mixed cellularity Hodgkin lymphoma	828 European ancestry cases, 14,315 European ancestry controls	135 cases, 3,069 controls	6p21.32	C6orf10	rs13196329-?	NR	3E-14	(conditioned on rs1633096)	5.88	[3.70-9.09]	Illumina [> 10000000] (imputed)	N
612	chr6_dbb_hap3	3604288	3604289	rs13196329	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral fat	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	6p21.32	C6orf10	rs13196329-C	0.02	3E-6	(women)			Affymetrix, Illumina [2500000] (imputed)	N
612	chr6_dbb_hap3	3605574	3605575	rs7775581	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.32		rs7775581-C	0.429	4E-12				Affymetrix [10369434] (imputed)	N
612	chr6_dbb_hap3	3605839	3605840	rs9268310	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	Systemic lupus erythematosus	1,639 East Asian ancestry cases, 2,410 East Asian ancestry controls	NA			rs9268310-C	NR	7E-14		0.3626	[0.27-0.46] unit decrease	Illumina [NR] (imputed)	N
612	chr6_dbb_hap3	3608067	3608068	rs137931178	26959717	Nicoletti P	2016-03-09	Pharmacogenet Genomics	HLA-DRB1*16: 01-DQB1*05: 02 is a novel genetic risk factor for flupirtine-induced liver injury.	Drug-induced liver injury	620 European ancestry cases, 10,588 European ancestry controls	NA	6p21.32	MHC	rs137931178-?	NR	7E-6		79.0	[11.72-533.7]	Illumina [NR] (imputed)	N
612	chr6_dbb_hap3	3614139	3614140	rs2143462	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	C6orf10	rs2143462-A	NR	7E-12		0.0268233	[0.019-0.034] unit decrease	Affymetrix [323858] (imputed)	N
612	chr6_dbb_hap3	3614139	3614140	rs2143462	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	C6orf10	rs2143462-A	NR	6E-11		0.0256594	[0.018-0.033] unit decrease	Affymetrix [127266] (imputed)	N
612	chr6_dbb_hap3	3615125	3615126	rs3129934	22457343	Martinelli-Boneschi F	2012-03-28	Mult Scler	A genome-wide association study in progressive multiple sclerosis.	Multiple sclerosis	197 European ancestry cases, 234 European ancestry controls	379 European ancestry cases, 398 European ancestry controls	6p21.32	C6orf10	rs3129934-T	0.10	7E-16		2.34	[1.90-2.87]	Affymetrix [277866]	N
612	chr6_dbb_hap3	3615125	3615126	rs3129934	18941528	Comabella M	2008-10-22	PLoS One	Identification of a novel risk locus for multiple sclerosis at 13q31.3 by a pooled genome-wide scan of 500,000 single nucleotide polymorphisms.	Multiple sclerosis	242 European ancestry cases, 242 European ancestry controls	553 European ancestry cases, 1,033 European ancestry controls	6p21.32	HLA-DRB1	rs3129934-T	NR	9E-11		3.3	[2.3-4.9]	Affymetrix [428867]	N
612	chr6_dbb_hap3	3615483	3615484	rs113857285	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Celiac disease (PheCode 557.1)	1,036 European ancestry cases, 455,312 European ancestry controls	NA	6p21.32		rs113857285-A	0.002145	8E-10		4.04	[2.75-5.33] unit increase	NR [11842647] (imputed)	N
612	chr6_dbb_hap3	3615704	3615705	rs3129939	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.32	c6orf10	rs3129939-G	0.1772	2E-40		2.6	[NR]	Illumina [242824]	N
612	chr6_dbb_hap3	3616570	3616571	rs2273017	21900946	Nakabayashi K	2011-09-08	J Hum Genet	Identification of independent risk loci for Graves' disease within the MHC in the Japanese population.	Graves' disease	1,119 Japanese ancestry cases, 2,718 Japanese ancestry controls	432 Japanese ancestry cases, 1,157 Japanese ancestry controls	6p21.32	MHC	rs2273017-A	0.51	2E-22		1.53	[1.40-1.66]	Perlegen [268068]	N
612	chr6_dbb_hap3	3617198	3617199	rs3129942	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	6p21.32	C6orf10	rs3129942-G	0.742436	3E-18		0.013944	[0.011-0.017] unit decrease	Affymetrix [12370749]	N
612	chr6_dbb_hap3	3617617	3617618	rs3129943	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cirrhosis	2,551 East Asian ancestry cases, 176,175 East Asian ancestry controls	NA	6p21.32		rs3129943-G	0.365494247	2E-11		0.19759746	[0.14-0.26] unit increase	Illumina [13429980] (imputed)	N
612	chr6_dbb_hap3	3617617	3617618	rs3129943	21804548	Hirota T	2011-07-31	Nat Genet	Genome-wide association study identifies three new susceptibility loci for adult asthma in the Japanese population.	Asthma	1,532 Japanese ancestry cases, 3,304 Japanese ancestry controls	5,639 Japanese ancestry cases, 24,608 Japanese ancestry controls	6p21.32	C6orf10	rs3129943-T	0.62	3E-15		1.17	[1.12-1.21]	Illumina [458847]	N
612	chr6_dbb_hap3	3617907	3617908	rs2073044	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	C6orf10	rs2073044-T	NR	3E-16		0.0261214	[0.02-0.032] unit increase	Affymetrix [319769] (imputed)	N
612	chr6_dbb_hap3	3617907	3617908	rs2073044	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs2073044-T	NR	5E-16		0.0258492	[0.02-0.032] unit increase	Affymetrix [319769] (imputed)	N
612	chr6_dbb_hap3	3617907	3617908	rs2073044	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs2073044-T	NR	8E-14		0.0241214	[0.018-0.03] unit increase	Affymetrix [321169] (imputed)	N
612	chr6_dbb_hap3	3617997	3617998	rs2050190	34116867	Tanaka N	2021-06-02	J Allergy Clin Immunol	Eight novel susceptibility loci and putative causal variants in atopic dermatitis.	Atopic dermatitis	2,597 Japanese ancestry cases, 110,504 Japanese ancestry controls, 25,685 European ancestry cases, 76,768 European ancestry controls	NA	6p21.32		rs2050190-?	NR	4E-13		0.8	[0.75-0.85]	Illumina [5170515] (imputed)	N
612	chr6_dbb_hap3	3617997	3617998	rs2050190	22703881	Tang W	2012-06-14	Am J Hum Genet	Genetic associations for activated partial thromboplastin time and prothrombin time, their gene expression profiles, and risk of coronary artery disease.	Activated partial thromboplastin time	9,240 European ancestry individuals	2611 European ancestry individuals	6p21.32	C6orf10	rs2050190-A	NR	7E-7		0.2528	[0.17-0.34] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
612	chr6_dbb_hap3	3618705	3618706	rs9501618	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs9501618-C	0.016	9E-26	(Complement C4, C4A.C4B.4481.34.2)	1.03	[0.83-1.23] unit increase	Affymetrix [10572788] (imputed)	N
612	chr6_dbb_hap3	3618761	3618762	rs6913309	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Strep throat	52,487 European ancestry cases, 22,017 European ancestry controls	NA	6p21.32	NR	rs6913309-?	NR	5E-7		0.0308	[0.019-0.043] unit decrease	Illumina [at least 560000] (imputed)	N
612	chr6_dbb_hap3	3618761	3618762	rs6913309	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.32	Intergenic	rs6913309-T	NR	4E-6	(men)	0.0229829	[0.013-0.033] unit increase	Illumina [13520550] (imputed)	N
612	chr6_dbb_hap3	3618818	3618819	rs2050188	31375628	Tengvall K	2019-08-02	Proc Natl Acad Sci U S A	Molecular mimicry between Anoctamin 2 and Epstein-Barr virus nuclear antigen 1 associates with multiple sclerosis risk.	Anti-anoctamin 2 antibody levels	11,936 European ancestry individuals	NA	6p21.32	NR	rs2050188-G	NR	2E-14		0.07	[0.046-0.094] unit increase	Illumina [615763]	N
612	chr6_dbb_hap3	3618818	3618819	rs2050188	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	6p21.32	HLA-DRB5, C6orf10	rs2050188-T	0.673	9E-6	(EA)	0.0509	[0.028-0.073] unit increase	Affymetrix, Illumina [NR] (imputed)	N
612	chr6_dbb_hap3	3618818	3618819	rs2050188	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	6p21.32	HLA-DRB5, C6orf10	rs2050188-T	0.67	8E-9		1.06	[1.04-1.08]	Affymetrix, Illumina [NR] (imputed)	N
612	chr6_dbb_hap3	3618846	3618847	rs6913471	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	C6orf10	rs6913471-A	NR	1E-8		0.0182835	[0.012-0.025] unit decrease	Affymetrix [323123] (imputed)	N
612	chr6_dbb_hap3	3619027	3619028	rs2281276	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	C6orf10	rs2281276-G	NR	2E-11		0.0210706	[0.015-0.027] unit increase	Affymetrix [323858] (imputed)	N
612	chr6_dbb_hap3	3619027	3619028	rs2281276	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	C6orf10	rs2281276-G	NR	2E-10		0.0199503	[0.014-0.026] unit increase	Affymetrix [127266] (imputed)	N
612	chr6_dbb_hap3	3619027	3619028	rs2281276	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	C6orf10	rs2281276-G	NR	4E-15		0.0241531	[0.018-0.03] unit decrease	Affymetrix [323123] (imputed)	N
612	chr6_dbb_hap3	3619027	3619028	rs2281276	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	6p21.32	C6orf10	rs2281276-G	0.472805	6E-12		0.01778208	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
612	chr6_dbb_hap3	3619793	3619794	rs3129944	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs3129944-G	NR	4E-10		0.0217534	[0.015-0.029] unit decrease	Affymetrix [321169] (imputed)	N
612	chr6_dbb_hap3	3620129	3620130	rs9378202	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	C6orf10	rs9378202-C	NR	3E-9		0.0239944	[0.016-0.032] unit decrease	Affymetrix [323123] (imputed)	N
612	chr6_dbb_hap3	3620274	3620275	rs9268402	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	C6orf10	rs9268402-G	NR	2E-17		0.0239092	[0.018-0.029] unit decrease	Affymetrix [319769] (imputed)	N
612	chr6_dbb_hap3	3620274	3620275	rs9268402	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs9268402-G	NR	4E-17		0.0236172	[0.018-0.029] unit decrease	Affymetrix [319769] (imputed)	N
612	chr6_dbb_hap3	3620274	3620275	rs9268402	22751097	Lu X	2012-07-01	Nat Genet	Genome-wide association study in Han Chinese identifies four new susceptibility loci for coronary artery disease.	Coronary heart disease	1,515 Han Chinese ancestry cases, 5,019 Han Chinese ancestry controls	15,460 Han Chinese ancestry cases, 11,472 Han Chinese ancestry controls	6p21.32	BTNL2, C6orf10	rs9268402-G	0.59	3E-15		1.16	[1.12-1.20]	Affymetrix [~ 2200000] (imputed)	N
612	chr6_dbb_hap3	3620319	3620320	rs9391858	31566214	Kulminski AM	2019-09-30	J Gerontol A Biol Sci Med Sci	Quantitative and qualitative role of antagonistic heterogeneity in genetics of blood lipids.	Total cholesterol levels	29,902 European ancestry individuals	NA			rs9391858-G	0.14	3E-8		2.4	[1.56-3.24] unit increase	Affymetrix, Illumina [up to 2500000] (imputed)	N
612	chr6_dbb_hap3	3621034	3621035	rs73729220	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.32	NR	rs73729220-G	0.015	6E-7	(women)	0.670827	[0.41-0.93] unit increase	Affymetrix [up to 8900000] (imputed)	N
612	chr6_dbb_hap3	3621034	3621035	rs73729220	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.32	NR	rs73729220-G	0.015	4E-9		0.429629	[0.29-0.57] unit increase	Affymetrix [up to 8900000] (imputed)	N
612	chr6_dbb_hap3	3621452	3621453	rs3129945	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p21.32	NR	rs3129945-?	NR	3E-6		4.704	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
612	chr6_dbb_hap3	3622284	3622285	rs3117106	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	C6orf10	rs3117106-C	NR	4E-11		0.0274536	[0.019-0.036] unit increase	Affymetrix [323123] (imputed)	N
612	chr6_dbb_hap3	3624001	3624002	rs12528797	28107422	de Vries PS	2017-01-20	PLoS One	Comparison of HapMap and 1000 Genomes Reference Panels in a Large-Scale Genome-Wide Association Study.	Fibrinogen levels	91,953 European ancestry individuals (imputed to HapMap)		6p21.32	C6orf10, HCG23	rs12528797-?	NR	9E-9		0.0095	unit increase	Affymetrix, Illumina [2749429] (imputed)	N
612	chr6_dbb_hap3	3624198	3624199	rs7758128	21326295	Jin Y	2011-02-17	J Invest Dermatol	Genome-wide analysis identifies a quantitative trait locus in the MHC class II region associated with generalized vitiligo age of onset.	Vitiligo	1,339 European ancestry cases	677 European ancestry cases	6p21.32	BTNL2, C6orf10	rs7758128-A	0.06	8E-11				Illumina [520460]	N
612	chr6_dbb_hap3	3624510	3624511	rs2395153	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs2395153-G	NR	9E-12		0.0195615	[0.014-0.025] unit increase	Affymetrix [321114] (imputed)	N
612	chr6_dbb_hap3	3624510	3624511	rs2395153	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs2395153-G	NR	3E-19		0.0258131	[0.02-0.031] unit increase	Affymetrix [321169] (imputed)	N
612	chr6_dbb_hap3	3624604	3624605	rs2894254	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	6p21.32	C6orf10, BTNL2	rs2894254-T	NR	1E-13		0.238275	[0.18-0.3] unit increase	Illumina [at least 950000] (imputed)	N
612	chr6_dbb_hap3	3624604	3624605	rs2894254	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.32	NOTCH4, C6orf10	rs2894254-T	0.8879	1E-7	(EA)	0.0337	[0.021-0.046] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
612	chr6_dbb_hap3	3624604	3624605	rs2894254	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.32	BTNL2	rs2894254-T	0.8879	3E-9	(EA, men)	0.0557	[0.037-0.074] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
612	chr6_dbb_hap3	3624604	3624605	rs2894254	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6p21.32	BTNL2	rs2894254-T	0.888	6E-8	(men)	0.058	[0.037-0.079] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
612	chr6_dbb_hap3	3624604	3624605	rs2894254	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6p21.32	BTNL2	rs2894254-T	0.888	6E-8	(EA, men)	0.058	[0.037-0.079] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
612	chr6_dbb_hap3	3624604	3624605	rs2894254	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6p21.32	BTNL2	rs2894254-T	0.8879	6E-7	(EA)	0.0363	[0.022-0.051] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
612	chr6_dbb_hap3	3624604	3624605	rs2894254	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.32	NOTCH4, C6orf10	rs2894254-?	0.8879	5E-7	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
612	chr6_dbb_hap3	3624604	3624605	rs2894254	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.32	BTNL2	rs2894254-?	0.8879	9E-9	(men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
612	chr6_dbb_hap3	3624604	3624605	rs2894254	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.32	BTNL2	rs2894254-?	0.8879	9E-9	(EA, men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
612	chr6_dbb_hap3	3625406	3625407	rs9268435	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Serum alkaline phosphatase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	6p21.32	LOC101929163	rs9268435-?		1E-10		0.0358	[0.025-0.047] unit decrease	Illumina [31500000] (imputed)	N
612	chr6_dbb_hap3	3628472	3628473	rs3117103	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	6p21.32		rs3117103-A	0.859948	4E-9		0.0339726	[0.023-0.045] unit decrease	NR [11722792] (imputed)	N
612	chr6_dbb_hap3	3629369	3629370	rs28732201	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p21.32	NR	rs28732201-?	NR	6E-16		0.1787	[0.14-0.22] unit decrease	Illumina [at least 560000] (imputed)	N
612	chr6_dbb_hap3	3630481	3630482	rs6930777	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6p21.32		rs6930777-?	NR	5E-17		1.14262	[1.11-1.17]	NR [685523]	N
612	chr6_dbb_hap3	3631531	3631532	rs9268465	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HCG23	rs9268465-T	NR	6E-10		0.0196001	[0.013-0.026] unit decrease	Affymetrix [319769] (imputed)	N
612	chr6_dbb_hap3	3631531	3631532	rs9268465	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HCG23	rs9268465-T	NR	2E-8		0.0196784	[0.013-0.027] unit decrease	Affymetrix [323858] (imputed)	N
612	chr6_dbb_hap3	3631531	3631532	rs9268465	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HCG23	rs9268465-T	NR	1E-9		0.0191769	[0.013-0.025] unit decrease	Affymetrix [319769] (imputed)	N
612	chr6_dbb_hap3	3633325	3633326	rs4424066	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	6p21.32	NR	rs4424066-A	0.578029598622173	7E-14		0.024764335	units decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
612	chr6_dbb_hap3	3636137	3636138	rs146003878	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs146003878-A	0.016	5E-11	(conditional)	1.678	[1.52-1.83]	Illumina [11270530] (imputed)	N
612	chr6_dbb_hap3	3637099	3637100	rs3129950	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.32	BTNL2	rs3129950-G	0.8899	4E-9	(men)	0.0593	[0.04-0.079] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
612	chr6_dbb_hap3	3637168	3637169	rs3117099	22688191	Bergen SE	2012-06-12	Mol Psychiatry	Genome-wide association study in a Swedish population yields support for greater CNV and MHC involvement in schizophrenia compared with bipolar disorder.	Bipolar disorder and schizophrenia	2,111 European ancestry schizophrenia cases, 836 European ancestry bipolar disorder cases, 2,535 European ancestry controls	NA	6p21.32	other genes, MHC	rs3117099-?	NR	3E-6		1.25	[NR]	Affymetrix [745006]	N
612	chr6_dbb_hap3	3637411	3637412	rs3117098	21804548	Hirota T	2011-07-31	Nat Genet	Genome-wide association study identifies three new susceptibility loci for adult asthma in the Japanese population.	Asthma	1,532 Japanese ancestry cases, 3,304 Japanese ancestry controls	5,639 Japanese ancestry cases, 24,608 Japanese ancestry controls	6p21.32	BTNL2	rs3117098-G	0.25	5E-12		1.16	[1.11-1.21]	Illumina [458847]	N
612	chr6_dbb_hap3	3637447	3637448	rs9348883	29903748	Debiec H	2018-06-14	J Am Soc Nephrol	Transethnic, Genome-Wide Analysis Reveals Immune-Related Risk Alleles and Phenotypic Correlates in Pediatric Steroid-Sensitive Nephrotic Syndrome.	Childhood steroid-sensitive nephrotic syndrome	244 European ancestry cases, 2,552 European ancestry controls, 56 African cases, 454 African controls, 85 Maghrebian cases, 261 Maghrebian controls	NA	6p21.32	LOC101929163, HCG23, BTNL2	rs9348883-T	0.94	9E-7	(conditioned on rs1063348 & rs28366266)	3.5	[2.13-5.83]	Illumina [at least 7529344] (imputed)	N
612	chr6_dbb_hap3	3637587	3637588	rs3117097	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling nervous	373,121 European ancestry individuals	NA	6p21.32	PSORS1C1	rs3117097-A	0.164022	4E-10		6.26	z score increase	NR [10847151] (imputed)	N
612	chr6_dbb_hap3	3638358	3638359	rs16870123	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	6p21.32	NR	rs16870123-?	NR	1E-10		6.408	NR z score decrease	Illumina [at least 830937] (imputed)	N
612	chr6_dbb_hap3	3640031	3640032	rs3817971	34871226	Kim SY	2021-11-01	Medicine (Baltimore)	Genome-wide association study identifies BTNL2 associated with atopic asthma in children.	Atopic asthma	243 East Asian ancestry child cases, 134 East Asian ancestry child controls	NA	6p21.32		rs3817971-A	NR	6E-7		3.509	[2.09-5.889]	Affymetrix [423461]	N
612	chr6_dbb_hap3	3640031	3640032	rs3817971	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p21.32	C6orf10, BTNL2	rs3817971-C	0.03	5E-6	(Turkish)	2.62	[1.71-4.01]	Illumina [up to 547389]	N
612	chr6_dbb_hap3	3640383	3640384	rs17202393	33592630	Herrera-Rivero M	2021-02-16	Thromb Haemost	Single- and Multimarker Genome-Wide Scans Evidence Novel Genetic Risk Modifiers for Venous Thromboembolism.	Venous thromboembolism	964 European ancestry cases, 899 European ancestry controls	NA	6p21.32	BTNL2, HCG23	rs17202393-A	NR	4E-38		0.03743	[0.02273-0.06163]	Illumina [484621]	N
612	chr6_dbb_hap3	3640909	3640910	rs114516436	27629369	Gao J	2016-09-15	Neuropsychopharmacology	Genome-Wide Association Study of Loneliness Demonstrates a Role for Common Variation.	Loneliness (multivariate analysis)	8,490 European ancestry individuals, 1,228 African American individuals, 867 Hispanic American individuals, 175 individuals	NA	6p21.32	BTNL2, HCG23, C6orf10	rs114516436-?	NR	2E-6	(EA)			Illumina [7205781] (imputed)	N
612	chr6_dbb_hap3	3642113	3642114	rs1980493	25936594	Tomer Y	2015-04-27	J Autoimmun	Genome wide identification of new genes and pathways in patients with both autoimmune thyroiditis and type 1 diabetes.	Type 1 diabetes and autoimmune thyroid diseases	346 European ancestry cases, 727 European ancestry controls	185 European ancestry cases, 340 European ancestry controls	6p21.32	BTNL2	rs1980493-G	NR	2E-20		2.5034		Illumina [514008]	N
612	chr6_dbb_hap3	3642113	3642114	rs1980493	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.32	BTNL2	rs1980493-G	0.1656	1E-48		2.87	[NR]	Illumina [242824]	N
612	chr6_dbb_hap3	3642113	3642114	rs1980493	19287509	Cui J	2009-03-14	Mol Med	Genome-wide association study of determinants of anti-cyclic citrullinated peptide antibody titer in adults with rheumatoid arthritis.	Anti-cyclic Citrullinated Peptide Antibody	531 European ancestry cases	849 European ancestry cases	6p21.32	HLA-DRA, BTNL2	rs1980493-?	0.13	5E-7				Affymetrix [97248]	N
612	chr6_dbb_hap3	3642714	3642715	rs2076530	22936702	Hofmann S	2012-08-30	Eur Respir J	Genome-wide association analysis reveals 12q13.3-q14.1 as new risk locus for sarcoidosis.	Sarcoidosis	637 European ancestry cases, 1,233 European ancestry controls	3,121 European ancestry cases, 4,284 European ancestry controls	6p21.32	BTNL2	rs2076530-?	NR	3E-11	(Chronic)			Affymetrix [677619]	N
612	chr6_dbb_hap3	3642742	3642743	rs9268480	19915573	Asano K	2009-11-15	Nat Genet	A genome-wide association study identifies three new susceptibility loci for ulcerative colitis in the Japanese population.	Ulcerative colitis	376 Japanese ancestry cases, 934 Japanese ancestry controls	376 Japanese ancestry cases, 1,097 Japanese ancestry controls	6p21.32	BTNL2	rs9268480-G	0.91	3E-6		1.82	[1.43-2.33]	Illumina [513923]	N
612	chr6_dbb_hap3	3642853	3642854	rs2076529	32766473	Yoshida K	2020-05-19	Hepatol Commun	Genome-Wide Association Study of Lean Nonalcoholic Fatty Liver Disease Suggests Human Leukocyte Antigen as a Novel Candidate Locus.	Lean nonalcoholic fatty liver disease	275 Japanese ancestry cases, 1,411 Japanese ancestry controls	NA	6p21.32	NR	rs2076529-?	NR	2E-7		1.66	[1.37-2.00]	Affymetrix [NR]	N
612	chr6_dbb_hap3	3642853	3642854	rs2076529	20935629	Heid IM	2010-10-10	Nat Genet	Meta-analysis identifies 13 new loci associated with waist-hip ratio and reveals sexual dimorphism in the genetic basis of fat distribution.	Waist-hip ratio	Up to 77,167 European ancestry individuals	Up to 113,636 European ancestry individuals	6p21.32	BTNL2	rs2076529-C	0.43	4E-7		0.02	[NR] unit increase	Affymetrix, Illumina, Perlegen [up to 2850269] (imputed)	N
612	chr6_dbb_hap3	3645319	3645320	rs4248166	29534301	Nishida N	2018-03-13	Hepatology	Key HLA-DRB1-DQB1 haplotypes and role of the BTNL2 gene for response to a hepatitis B vaccine.	Response to hepatitis B vaccine	107 Japanese ancestry low responder individuals, 351 Japanese ancestry intermediate responder individuals, 735 Japanese ancestry high responder individuals	NA	6p21.32	BTNL2	rs4248166-?		1E-12		0.124	unit decrease	Affymetrix [427664]	N
612	chr6_dbb_hap3	3645319	3645320	rs4248166	26819262	Zhou Y	2016-01-27	Mult Scler	Genetic loci for Epstein-Barr virus nuclear antigen-1 are associated with risk of multiple sclerosis.	Epstein Barr virus nuclear antigen 1 IgG levels	1,243 parents and up to 2,356 children from 992 families, 1,956 Mexican American individuals		6p21.32	NR	rs4248166-T		9E-11	(Mexican American)	0.16	unit decrease	Illumina [up to 2428201] (imputed)	N
612	chr6_dbb_hap3	3645319	3645320	rs4248166	26819262	Zhou Y	2016-01-27	Mult Scler	Genetic loci for Epstein-Barr virus nuclear antigen-1 are associated with risk of multiple sclerosis.	Epstein Barr virus nuclear antigen 1 IgG levels	1,243 parents and up to 2,356 children from 992 families, 1,956 Mexican American individuals		6p21.32	NR	rs4248166-T		1E-9		0.16	unit decrease	Illumina [up to 2428201] (imputed)	N
612	chr6_dbb_hap3	3645915	3645916	rs3117116	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein BGLAP	5,367 Icelandic ancestry individuals	NA	6p21.32		rs3117116-G	0.2246	5E-20		0.208543	[0.16-0.25] unit decrease	Illumina [7506463] (imputed)	N
612	chr6_dbb_hap3	3646985	3646986	rs3817963	27501781	Shiraishi K	2016-08-09	Nat Commun	Association of variations in HLA class II and other loci with susceptibility to EGFR-mutated lung adenocarcinoma.	EGFR mutation-positive lung adenocarcinoma	663 Japanese ancestry cases, 4,367 Japanese ancestry controls	2,510 Japanese ancestry cases, 10,791 Japanese ancestry controls	6p21.32	BTNL2	rs3817963-G	0.316	1E-16		1.29	[1.21-1.37]	Illumina [NR] (imputed)	N
612	chr6_dbb_hap3	3646985	3646986	rs3817963	23472185	Mero IL	2013-03-05	PLoS One	Oligoclonal band status in Scandinavian multiple sclerosis patients is associated with specific genetic risk alleles.	Multiple sclerosis (OCB status)	1,367 European ancestry OCB positive cases, 161 European ancestry OCB negative cases, 428 European ancestry controls	NA	6p21.32	BTNL2	rs3817963-?	NR	8E-6	(OCB positive vs. controls)	1.52	[1.27-1.79]	Illumina [495970]	N
612	chr6_dbb_hap3	3646985	3646986	rs3817963	23472185	Mero IL	2013-03-05	PLoS One	Oligoclonal band status in Scandinavian multiple sclerosis patients is associated with specific genetic risk alleles.	Multiple sclerosis (OCB status)	1,367 European ancestry OCB positive cases, 161 European ancestry OCB negative cases	3,029 European ancestry OCB positive cases, 374 European ancestry OCB negative cases	6p21.32	BTNL2	rs3817963-?	NR	6E-10		1.61	[1.38-1.87]	Illumina [495970]	N
612	chr6_dbb_hap3	3646985	3646986	rs3817963	23321320	Urabe Y	2013-01-12	J Hepatol	A genome-wide association study of HCV-induced liver cirrhosis in the Japanese population identifies novel susceptibility loci at the MHC region.	Hepatitis C induced liver cirrhosis	682 Japanese ancestry cases, 1,045 Japanese ancestry controls	936 Japanese ancestry cases, 3,809 Japanese ancestry controls	6p21.32	BTNL2	rs3817963-A	0.315	1E-8		1.3	[1.18-1.42]	Illumina [431618]	N
612	chr6_dbb_hap3	3646985	3646986	rs3817963	22797724	Shiraishi K	2012-07-15	Nat Genet	A genome-wide association study identifies two new susceptibility loci for lung adenocarcinoma in the Japanese population.	Lung adenocarcinoma	1,695 Japanese ancestry cases, 5,333 Japanese ancestry controls	4,334 Japanese ancestry cases, 8,202 Japanese ancestry controls	6p21.32	BTNL2	rs3817963-G	0.318	3E-10		1.18	[1.12-1.24]	Illumina [538166]	N
612	chr6_dbb_hap3	3647457	3647458	rs9268485	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	BTNL2	rs9268485-C	NR	1E-22		0.0275591	[0.022-0.033] unit decrease	Affymetrix [319769] (imputed)	N
612	chr6_dbb_hap3	3647457	3647458	rs9268485	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	BTNL2	rs9268485-C	NR	2E-12		0.0220667	[0.016-0.028] unit decrease	Affymetrix [323858] (imputed)	N
612	chr6_dbb_hap3	3647457	3647458	rs9268485	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	BTNL2	rs9268485-C	NR	4E-22		0.0271651	[0.022-0.033] unit decrease	Affymetrix [319769] (imputed)	N
612	chr6_dbb_hap3	3647457	3647458	rs9268485	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	BTNL2	rs9268485-C	NR	3E-11		0.0208559	[0.015-0.027] unit decrease	Affymetrix [127266] (imputed)	N
612	chr6_dbb_hap3	3647457	3647458	rs9268485	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	BTNL2	rs9268485-C	NR	3E-13		0.0204722	[0.015-0.026] unit increase	Affymetrix [321016] (imputed)	N
612	chr6_dbb_hap3	3647457	3647458	rs9268485	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	BTNL2	rs9268485-C	NR	2E-12		0.0216048	[0.016-0.028] unit increase	Affymetrix [323123] (imputed)	N
612	chr6_dbb_hap3	3647459	3647460	rs9268486	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs9268486-T	0.248	8E-27	(conditional)	1.384	[1.33-1.44]	Illumina [11270530] (imputed)	N
612	chr6_dbb_hap3	3648372	3648373	rs3763305	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	6p21.32		rs3763305-G	0.949	4E-9				Affymetrix [10369434] (imputed)	N
612	chr6_dbb_hap3	3648372	3648373	rs3763305	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.32	BTNL2	rs3763305-A	0.051434	4E-15		0.041934814	[0.031-0.052] unit decrease	Affymetrix [93095623] (imputed)	N
612	chr6_dbb_hap3	3649471	3649472	rs9461741	25569183	Vijai J	2015-01-08	Nat Commun	A genome-wide association study of marginal zone lymphoma shows association to the HLA region.	Marginal zone lymphoma	825 European ancestry cases, 6,221 European ancestry controls	456 European ancestry cases, 906 European ancestry controls	6p21.32	BTNL2	rs9461741-C	0.018	4E-15		2.66	[2.08-3.39]	Illumina [611856]	N
612	chr6_dbb_hap3	3649500	3649501	rs2076525	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	BTNL2	rs2076525-C	NR	9E-15		0.0237827	[0.018-0.03] unit increase	Affymetrix [321169] (imputed)	N
612	chr6_dbb_hap3	3649719	3649720	rs2076523	29903748	Debiec H	2018-06-14	J Am Soc Nephrol	Transethnic, Genome-Wide Analysis Reveals Immune-Related Risk Alleles and Phenotypic Correlates in Pediatric Steroid-Sensitive Nephrotic Syndrome.	Childhood steroid-sensitive nephrotic syndrome	56 African cases, 454 African controls	NA	6p21.32	BTNL2	rs2076523-?	NR	2E-9		4.8	[2.9-7.9]	Illumina [at least 7529344] (imputed)	N
612	chr6_dbb_hap3	3652069	3652070	rs10947260	28369058	Folkersen L	2017-04-03	PLoS Genet	Mapping of 79 loci for 83 plasma protein biomarkers in cardiovascular disease.	Blood protein levels in cardiovascular risk	3,394 European ancestry individuals	2,639 individuals	6p21.32	NOTCH4, AGER, ATF6B	rs10947260-C	0.1	6E-9		0.25	unit increase	Illumina [5270624] (imputed)	N
612	chr6_dbb_hap3	3652116	3652117	rs10947261	23850713	Yang SK	2013-07-14	Gut	Genome-wide association study of Crohn's disease in Koreans revealed three new susceptibility loci and common attributes of genetic susceptibility across ethnic populations.	Crohn's disease	532 Korean ancestry cases, 733 Korean ancestry controls	1,779 Korean ancestry cases, 1,709 Korean ancestry controls	6p21.32	HLA-DRA, HLA-DRB5, BTNL2, HLA-DRB1, HLA-DQA1	rs10947261-T	0.294	3E-12		1.36	[1.25-1.49]	Illumina [5664371] (imputed)	N
612	chr6_dbb_hap3	3652196	3652197	rs10947262	20305777	Nakajima M	2010-03-18	PLoS One	New sequence variants in HLA class II/III region associated with susceptibility to knee osteoarthritis identified by genome-wide association study.	Knee osteoarthritis	899 Japanese ancestry cases, 3,396 Japanese ancestry controls	167 Japanese ancestry cases, 347 Japanese ancestry controls, 813 European ancestry  cases, 1,071 European ancestry controls,	6p21.32	HLA-DQA2, HLA-DQB1, BTNL2	rs10947262-T	0.42	5E-9		1.31	[1.20-1.44]	Illumina [459393]	N
612	chr6_dbb_hap3	3652583	3652584	rs3806156	20410501	Jin Y	2010-04-21	N Engl J Med	Variant of TYR and autoimmunity susceptibility loci in generalized vitiligo.	Vitiligo	1,392 European ancestry cases, 2,629 European ancestry controls	647 European ancestry cases, 1,056 European ancestry controls, 183 European ancestry trios, 1,383 European ancestry individuals from 332 families	6p21.32	HLA-DRA, BTNL2, HLA-DQA1	rs3806156-T	0.37	7E-19		1.42	[1.32-1.54]	Illumina [520460]	N
612	chr6_dbb_hap3	3652686	3652687	rs3806157	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	BTNL2	rs3806157-G	NR	4E-8		0.0162252	[0.01-0.022] unit increase	Affymetrix [321114] (imputed)	N
612	chr6_dbb_hap3	3653480	3653481	rs2395158	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	6p21.32	BTNL2	rs2395158-A	0.830652	5E-40		0.0345684	[0.029-0.04] unit increase	Affymetrix [NR] (imputed)	N
612	chr6_dbb_hap3	3654858	3654859	rs3763309	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls	NA	6p21.32	HLA-DRA, BTNL2	rs3763309-A	0.21	1E-18		0.13	[0.091-0.169] unit increase	Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
612	chr6_dbb_hap3	3654858	3654859	rs3763309	24449572	Orozco G	2014-01-01	Arthritis Rheumatol	Novel rheumatoid arthritis susceptibility locus at 22q12 identified in an extended UK genome-wide association study.	Rheumatoid arthritis	3,034 European ancestry cases, 5,271 European ancestry controls	4,726 European ancestry cases, 2,625 European ancestry controls	6p21.32	HLA-DRB1	rs3763309-?		2E-124		2.3	[2.14-2.46]	Affymetrix, Illumina [1831729] (imputed)	N
612	chr6_dbb_hap3	3655061	3655062	rs3763311	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Cancer	56,634 White British ancestry cases, 218,196 White British ancestry controls	NA	6p21.32		rs3763311-?	NR	1E-5		0.967842	[0.95-0.98]	NR [688737]	N
612	chr6_dbb_hap3	3655233	3655234	rs3763312	26039976	Wei Z	2015-06-17	Sci Rep	Genome-Wide Association Studies of HIV-1 Host Control in Ethnically Diverse Chinese Populations.	HIV-1 viral setpoint	326 Han Chinese ancestry cases, 58 Dai Chinese ancestry cases, 40 Jingpo Chinese ancestry cases, 83 Uygur Chinese ancestry cases, 11 Hui Chinese ancestry cases, 20 East Asian cases	NA	6p21.32	BTNL2, HLA-DRA	rs3763312-A	0.15	6E-6	(Han)	0.4002	unit decrease	Illumina [up to 528294]	N
612	chr6_dbb_hap3	3655245	3655246	rs17208853	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Skin reflectance (Melanin index)	720 South Asian ancestry individuals		6p21.32	NR	rs17208853-C	NR	8E-6		0.649209	[0.36-0.93] unit decrease	Affymetrix, Illumina [at least 398118] (imputed)	N
612	chr6_dbb_hap3	3655356	3655357	rs3763313	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.32		rs3763313-C	0.17885300000000004	1E-26		1.0591807	[1.05-1.08]	Affymetrix, Illumina [9851866] (imputed)	N
612	chr6_dbb_hap3	3655356	3655357	rs3763313	20041166	Fellay J	2009-12-24	PLoS Genet	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	6p21.32	NOTCH4, BTNL2	rs3763313-?	NR	2E-6	(progression)			Illumina [NR]	N
612	chr6_dbb_hap3	3655402	3655403	rs9268500	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (drugs affecting bone structure and mineralization)	7,870 European ancestry cases, 207,798 European ancestry controls	NA	6p21.32	BTNL2	rs9268500-T	0.0508279	2E-8		0.20306516	[0.13-0.27] unit increase	Affymetrix [7288503] (imputed)	N
612	chr6_dbb_hap3	3655673	3655674	rs3763317	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	BTNL2	rs3763317-T	NR	1E-12		0.0200715	[0.015-0.026] unit increase	Affymetrix [319769] (imputed)	N
612	chr6_dbb_hap3	3655673	3655674	rs3763317	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	BTNL2	rs3763317-T	NR	1E-10		0.0202983	[0.014-0.026] unit increase	Affymetrix [323858] (imputed)	N
612	chr6_dbb_hap3	3655673	3655674	rs3763317	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	BTNL2	rs3763317-T	NR	6E-12		0.0194272	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
612	chr6_dbb_hap3	3655673	3655674	rs3763317	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	BTNL2	rs3763317-T	NR	2E-9		0.0188282	[0.013-0.025] unit increase	Affymetrix [127266] (imputed)	N
612	chr6_dbb_hap3	3655673	3655674	rs3763317	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	BTNL2	rs3763317-T	NR	2E-14		0.0235125	[0.017-0.03] unit decrease	Affymetrix [323123] (imputed)	N
612	chr6_dbb_hap3	3655673	3655674	rs3763317	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	BTNL2	rs3763317-T	NR	2E-13		0.0209669	[0.015-0.027] unit increase	Affymetrix [321169] (imputed)	N
612	chr6_dbb_hap3	3655673	3655674	rs3763317	23028341	Yang X	2012-09-13	PLoS Genet	Genome-wide association study for serum complement C3 and C4 levels in healthy Chinese subjects.	Complement C3 and C4 levels	1,999 Han Chinese ancestry male individuals	1,496 Han Chinese ancestry male individuals	6p21.32	HLA-DRB	rs3763317-C	0.37	9E-66	(Serum level of C4)	0.12	[0.10-0.14] g/L increase	Illumina [1940245] (imputed)	N
612	chr6_dbb_hap3	3655938	3655939	rs116835963	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs116835963-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
612	chr6_dbb_hap3	3656293	3656294	rs9268505	33713768	Akenroye AT	2021-03-10	J Allergy Clin Immunol	Genome-wide Association study of Asthma, Total IgE, and Lung function in a Cohort of Peruvian Children.	Serum IgE levels	727 Peruvian individuals	NA	6p21.32		rs9268505-?	NR	6E-8		0.211	unit increase	Illumina [NR] (imputed)	N
612	chr6_dbb_hap3	3657479	3657480	rs3129962	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	6p21.32	BTNL2	rs3129962-G	0.870649	8E-18		0.0243898	[0.019-0.03] unit increase	Affymetrix [NR] (imputed)	N
612	chr6_dbb_hap3	3657585	3657586	rs9268516	33328473	Ahluwalia TS	2020-12-16	Nat Commun	FUT2-ABO epistasis increases the risk of early childhood asthma and Streptococcus pneumoniae respiratory illnesses.	Childhood asthma with severe exacerbations	2,866 European ancestry cases,  65,415 European ancestry controls	NA	6p21.32	NR	rs9268516-A	NR	5E-10		0.1936	[0.13-0.25] unit increase	Illumina [up to 525976] (imputed)	N
612	chr6_dbb_hap3	3657585	3657586	rs9268516	23028483	Ramasamy A	2012-09-28	PLoS One	Genome-wide association studies of asthma in population-based cohorts confirm known and suggested loci and identify an additional association near HLA.	Asthma	1,716 European ancestry cases, 16,888 European ancestry controls	4,035 European ancestry cases, 11,251 European ancestry controls	6p21.32	HLA-DRA, BTNL2	rs9268516-T	0.24	1E-8		1.15	[1.10-1.21]	Affymetrix, Illumina [~ 2200000] (imputed)	N
612	chr6_dbb_hap3	3657832	3657833	rs9405098	23321320	Urabe Y	2013-01-12	J Hepatol	A genome-wide association study of HCV-induced liver cirrhosis in the Japanese population identifies novel susceptibility loci at the MHC region.	Hepatitis C induced liver cirrhosis	682 Japanese ancestry cases, 1,045 Japanese ancestry controls	936 Japanese ancestry cases, 3,809 Japanese ancestry controls	6p21.32	intergenic	rs9405098-A	0.253	1E-10		1.37	[1.24-1.51]	Illumina [431618]	N
612	chr6_dbb_hap3	3659003	3659004	rs9380294	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p21.32	BTNL2, HLA-DRA	rs9380294-C	0.01	7E-6	(EA)	4.76	[2.25-10.07]	Illumina [up to 547389]	N
612	chr6_dbb_hap3	3659831	3659832	rs7759742	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI in non-smokers	75,379 European ancestry women, 45,811 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	6p21.32	BTNL2	rs7759742-A	0.5117	1E-7		0.0144	[0.0091-0.0197] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
612	chr6_dbb_hap3	3659831	3659832	rs7759742	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (joint analysis main effects and smoking interaction)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	6p21.32	BTNL2	rs7759742-A	0.5117	1E-8				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
612	chr6_dbb_hap3	3659831	3659832	rs7759742	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	6p21.32	BTNL2	rs7759742-A	0.5117	3E-6	(men)	0.0248	[0.014-0.035] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
612	chr6_dbb_hap3	3659831	3659832	rs7759742	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	6p21.32	BTNL2	rs7759742-A	0.5117	1E-9		0.0217	[0.015-0.029] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
612	chr6_dbb_hap3	3659831	3659832	rs7759742	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex x age interaction (4df test)	up to 43,776 European ancestry men aged <50, up to 50,526 European ancestry women aged <50, up to 69,944 European ancestry men aged >50, up to 88,129 European ancestry women aged >50	NA	6p21.32	NR	rs7759742-A	0.509001212874385	2E-12				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
612	chr6_dbb_hap3	3659831	3659832	rs7759742	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p21.32	BTNL2	rs7759742-A	0.517	2E-11		0.0224	[0.016-0.029] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
612	chr6_dbb_hap3	3659831	3659832	rs7759742	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p21.32	BTNL2	rs7759742-A	0.5158	5E-8	(women)	0.0241	[0.015-0.033] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
612	chr6_dbb_hap3	3659831	3659832	rs7759742	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p21.32	BTNL2	rs7759742-A	0.5154	4E-6	(men)	0.0223	[0.013-0.032] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
612	chr6_dbb_hap3	3659831	3659832	rs7759742	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p21.32	BTNL2	rs7759742-A	0.511	4E-11	(EA)	0.0226	[0.016-0.029] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
612	chr6_dbb_hap3	3659831	3659832	rs7759742	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p21.32	BTNL2	rs7759742-A	0.5107	2E-7	(EA, women)	0.0237	[0.015-0.033] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
612	chr6_dbb_hap3	3659831	3659832	rs7759742	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p21.32	BTNL2	rs7759742-A	0.5106	5E-6	(EA, men)	0.0226	[0.013-0.032] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
612	chr6_dbb_hap3	3661158	3661159	rs4959027	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	Blood glucose levels	291,107 British ancestry individuals	NA	6p21.32	TBC1D22B	rs4959027-A	0.234405	5E-6		0.00399988	[0.0023-0.0057] unit decrease	Affymetrix [9463307] (imputed)	N
612	chr6_dbb_hap3	3661158	3661159	rs4959027	23449627	Cousminer DL	2013-02-27	Hum Mol Genet	Genome-wide association and longitudinal analyses reveal genetic loci linking pubertal height growth, pubertal timing and childhood adiposity.	Pubertal anthropometrics	up to 5,043 European ancestry males, up to 5,756 European ancestry females	NA	6p21.32	TAP2, HLA-DRA	rs4959027-G	0.82	9E-7	(Pubertal growth)	0.09	[0.057-0.123] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
612	chr6_dbb_hap3	3661246	3661247	rs4959028	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Effector Memory CD4+ T cell %CD4+ T cell	3,427 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs4959028-G	0.22877	3E-10		0.2111	[0.15-0.28] unit increase	Illumina [18349913] (imputed)	N
612	chr6_dbb_hap3	3661316	3661317	rs6930571	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.32	BTNL2	rs6930571-T	0.1659	2E-8		0.0561	[0.037-0.076] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
612	chr6_dbb_hap3	3661681	3661682	rs6912701	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.32	NR	rs6912701-T	0.014	6E-7	(women)	0.704901	[0.43-0.98] unit increase	Affymetrix [up to 8900000] (imputed)	N
612	chr6_dbb_hap3	3661681	3661682	rs6912701	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.32	NR	rs6912701-T	0.014	3E-9		0.454746	[0.31-0.6] unit increase	Affymetrix [up to 8900000] (imputed)	N
612	chr6_dbb_hap3	3662635	3662636	rs9268541	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6p21.32		rs9268541-C	0.054698	1E-10		0.03155108	[0.022-0.041] unit increase	Affymetrix [93095623] (imputed)	N
612	chr6_dbb_hap3	3663000	3663001	rs72847996	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs72847996-A	0.19	4E-8		4.04	[3.10-5.28]	Illumina [NR] (imputed)	N
612	chr6_dbb_hap3	3663041	3663042	rs80032720	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	IgA nephropathy	1,180 East Asian ancestry cases, 899 East Asian ancestry controls	NA			rs80032720-A	NR	9E-8		0.524129	[0.33-0.72] unit decrease	Illumina [NR] (imputed)	N
612	chr6_dbb_hap3	3663507	3663508	rs3135377	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	BTNL2	rs3135377-A	NR	2E-8		0.0200714	[0.013-0.027] unit increase	Affymetrix [323123] (imputed)	N
612	chr6_dbb_hap3	3665917	3665918	rs2395163	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	BTNL2	rs2395163-C	NR	7E-9		0.0197156	[0.013-0.026] unit increase	Affymetrix [321114] (imputed)	N
612	chr6_dbb_hap3	3665917	3665918	rs2395163	22451204	Pankratz N	2012-03-01	Ann Neurol	Meta-analysis of Parkinson's disease: identification of a novel locus, RIT2.	Parkinson's disease	4,238 European ancestry cases, 4,239 European ancestry controls	3,738 European ancestry cases, 2,111 European ancestry controls	6p21.32	LOC642072	rs2395163-?	NR	3E-11		1.24	[NR]	Illumina [2500000] (imputed)	N
612	chr6_dbb_hap3	3666383	3666384	rs2395166	33736632	Zeng Z	2021-03-18	BMC Med Genomics	Genome-wide association study identifies new loci associated with risk of HBV infection and disease progression.	Persistent hepatitis B virus infection	587 Chinese ancestry persistent cases, 275 Chinese ancestry clearance controls	NA	6p21.32	HLA-DRA	rs2395166-C	0.2182	1E-7		0.4534	NR	Affymetrix [607153]	N
612	chr6_dbb_hap3	3666383	3666384	rs2395166	28424481	Sugiura-Ogasawara M	2017-04-20	J Hum Genet	The first genome-wide association study identifying new susceptibility loci for obstetric antiphospholipid syndrome.	Obstetric antiphospholipid syndrome	115 Japanese ancestry female cases, 419 Japanese ancestry male and female controls	NA	6p21.32	HLA-DRA	rs2395166-T	0.71	3E-6		2.564103	[1.69-3.85]	Affymetrix [426344]	N
612	chr6_dbb_hap3	3666425	3666426	rs9461744	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4+ CD8dim T cell Absolute Count	3,652 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9461744-G	0.21272	7E-12		0.2434	[0.17-0.31] unit increase	Illumina [18427348] (imputed)	N
612	chr6_dbb_hap3	3666425	3666426	rs9461744	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4+ CD8dim T cell %lymphocyte	3,668 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9461744-G	0.21247	8E-19		0.3015	[0.24-0.37] unit increase	Illumina [18430788] (imputed)	N
612	chr6_dbb_hap3	3666425	3666426	rs9461744	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4+ CD8dim T cell %leukocyte	3,668 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9461744-G	0.21247	1E-16		0.2827	[0.22-0.35] unit increase	Illumina [18430788] (imputed)	N
612	chr6_dbb_hap3	3666654	3666655	rs2213581	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	6p21.32	BTNL2	rs2213581-T	0.2346	2E-11		0.002	[0.0014-0.0026] unit increase	Affymetrix [15275733] (imputed)	N
612	chr6_dbb_hap3	3667251	3667252	rs116869525	26151496	Chen PL	2015-07-07	Nat Commun	Genetic determinants of antithyroid drug-induced agranulocytosis by human leukocyte antigen genotyping and genome-wide association study.	Thionamide-induced agranulocytosis in Graves' disease	21 East Asian ancestry cases with agranulocytosis, 662 East Asian ancestry cases without agranulocytosis	21 East Asian ancestry cases with agranulocytosis, 546 East Asian ancestry cases without agranulocytosis	6p21.32	HLA-DRB1*08:03	rs116869525-T	0.083	1E-8	(trend)	4.16	[2.50-6.90] (allelic)	Affymetrix [522980]	N
612	chr6_dbb_hap3	3667363	3667364	rs3135365	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PRTN3	5,361 Icelandic ancestry individuals	NA	6p21.32		rs3135365-C	0.2736	5E-56		0.319492	[0.28-0.36] unit decrease	Illumina [7506463] (imputed)	N
612	chr6_dbb_hap3	3667363	3667364	rs3135365	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p21.32	BTNL2	rs3135365-C	0.022	9E-6		0.202	[0.11-0.29] unit increase	Affymetrix, Illumina [7374092] (imputed)	N
612	chr6_dbb_hap3	3667413	3667414	rs9268557	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.32		rs9268557-T	0.525	2E-25				Affymetrix [10369434] (imputed)	N
612	chr6_dbb_hap3	3667413	3667414	rs9268557	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.32		rs9268557-T	0.525	3E-16				Affymetrix [10369434] (imputed)	N
612	chr6_dbb_hap3	3667413	3667414	rs9268557	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.32		rs9268557-T	0.525	1E-45				Affymetrix [10369434] (imputed)	N
612	chr6_dbb_hap3	3667413	3667414	rs9268557	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	BTNL2	rs9268557-C	NR	1E-12		0.0202435	[0.015-0.026] unit increase	Affymetrix [321169] (imputed)	N
612	chr6_dbb_hap3	3667413	3667414	rs9268557	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p21.32	NR	rs9268557-?	NR	4E-15		0.0947	[0.071-0.118] unit increase	Illumina [at least 560000] (imputed)	N
612	chr6_dbb_hap3	3667413	3667414	rs9268557	26272072	Jiang X	2015-08-13	Rheumatology (Oxford)	An Immunochip-based interaction study of contrasting interaction effects with smoking in ACPA-positive versus ACPA-negative rheumatoid arthritis.	ACPA-positive rheumatoid arthritis (smoking interaction)	340 European ancestry never-smoker cases, 493 European ancestry ever-smoker cases, 746 European ancestry never-smoker controls, 994 European ancestry ever-smoker controls	187 European ancestry never-smoker cases, 421 European ancestry ever-smoker cases, 461 European ancestry never-smoker controls, 447 European ancestry ever-smoker controls	6p21.32	NR	rs9268557-?	NR	3E-10	(adjusted for HLA shared epitope)	2.5	[1.92-3.7]	Illumina [133648] (imputed)	N
612	chr6_dbb_hap3	3667499	3667500	rs9268559	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	6p21.32		rs9268559-?	NR	5E-8				Affymetrix [NR] (imputed)	N
612	chr6_dbb_hap3	3667499	3667500	rs9268559	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	6p21.32		rs9268559-G	0.023054	2E-12		0.054041814	[0.039-0.069] unit decrease	Affymetrix [93095623] (imputed)	N
612	chr6_dbb_hap3	3667499	3667500	rs9268559	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.32	NR	rs9268559-G	0.013	4E-7	(women)	0.762177	[0.47-1.05] unit increase	Affymetrix [up to 8900000] (imputed)	N
612	chr6_dbb_hap3	3667499	3667500	rs9268559	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.32	NR	rs9268559-G	0.013	2E-8		0.442409	[0.29-0.6] unit increase	Affymetrix [up to 8900000] (imputed)	N
612	chr6_dbb_hap3	3667620	3667621	rs9268560	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	BTNL2	rs9268560-C	NR	5E-17		0.023445	[0.018-0.029] unit decrease	Affymetrix [319769] (imputed)	N
612	chr6_dbb_hap3	3667620	3667621	rs9268560	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	BTNL2	rs9268560-C	NR	1E-10		0.0201058	[0.014-0.026] unit decrease	Affymetrix [323858] (imputed)	N
612	chr6_dbb_hap3	3667620	3667621	rs9268560	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	BTNL2	rs9268560-C	NR	1E-15		0.0224411	[0.017-0.028] unit decrease	Affymetrix [319769] (imputed)	N
612	chr6_dbb_hap3	3667620	3667621	rs9268560	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	BTNL2	rs9268560-C	NR	4E-9		0.0183123	[0.012-0.024] unit decrease	Affymetrix [127266] (imputed)	N
612	chr6_dbb_hap3	3667620	3667621	rs9268560	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	BTNL2	rs9268560-C	NR	3E-15		0.0220981	[0.017-0.028] unit increase	Affymetrix [321016] (imputed)	N
612	chr6_dbb_hap3	3667620	3667621	rs9268560	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	BTNL2	rs9268560-C	NR	1E-17		0.0260901	[0.02-0.032] unit increase	Affymetrix [323123] (imputed)	N
612	chr6_dbb_hap3	3667651	3667652	rs28732209	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	334,468 European ancestry, NR ancestry individuals	NA	6p21.32		rs28732209-?	NR	5E-8				Affymetrix [NR] (imputed)	N
612	chr6_dbb_hap3	3667653	3667654	rs3135364	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C4A;C4B	5,353 Icelandic ancestry individuals	NA	6p21.32		rs3135364-G	0.2232	3E-39		0.289407	[0.25-0.33] unit decrease	Illumina [7506463] (imputed)	N
612	chr6_dbb_hap3	3667653	3667654	rs3135364	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	6p21.32	NR	rs3135364-G	0.221478	4E-13		0.0590942	[0.043-0.075] unit increase	Affymetrix [17914406] (imputed)	N
612	chr6_dbb_hap3	3667756	3667757	rs3135363	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	BTNL2	rs3135363-G	NR	2E-11		0.0237256	[0.017-0.031] unit decrease	Affymetrix [323858] (imputed)	N
612	chr6_dbb_hap3	3667756	3667757	rs3135363	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	BTNL2	rs3135363-G	NR	1E-10		0.022911	[0.016-0.03] unit decrease	Affymetrix [127266] (imputed)	N
612	chr6_dbb_hap3	3667756	3667757	rs3135363	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on CD33- HLA DR+	1,635 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs3135363-G	0.17311	2E-13		0.3649	[0.27-0.46] unit increase	Illumina [16999305] (imputed)	N
612	chr6_dbb_hap3	3667756	3667757	rs3135363	24282030	Pan L	2013-11-28	Hum Mol Genet	A genome-wide association study identifies polymorphisms in the HLA-DR region associated with non-response to hepatitis B vaccination in Chinese Han populations.	Hepatitis B vaccine response	108 Han Chinese ancestry high-responder cases, 77 Han Chinese ancestry non-responder controls	1,336 Han Chinese ancestry high-responder cases, 420 Han Chinese ancestry non-responder controls	6p21.32	HLA-DR	rs3135363-?	NR	8E-7		1.51	[1.28-1.78]	Illumina [588026]	N
612	chr6_dbb_hap3	3667756	3667757	rs3135363	23321320	Urabe Y	2013-01-12	J Hepatol	A genome-wide association study of HCV-induced liver cirrhosis in the Japanese population identifies novel susceptibility loci at the MHC region.	Hepatitis C induced liver cirrhosis	682 Japanese ancestry cases, 1,045 Japanese ancestry controls	936 Japanese ancestry cases, 3,809 Japanese ancestry controls	6p21.32	intergenic	rs3135363-C	0.702	1E-10		1.37	[1.24-1.51]	Illumina [431618]	N
612	chr6_dbb_hap3	3667756	3667757	rs3135363	21764829	Png E	2011-07-15	Hum Mol Genet	A genome-wide association study of hepatitis B vaccine response in an Indonesian population reveals multiple independent risk variants in the HLA region.	Hepatitis B vaccine response	1,683 Indonesian ancestry individuals	1,931 Indonesian ancestry individuals	6p21.32	HLA-DR	rs3135363-?	NR	7E-22		1.53	[1.35-1.74]	Illumina [455508]	N
612	chr6_dbb_hap3	3668440	3668441	rs2894255	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	BTNL2	rs2894255-T	NR	2E-17		0.0362414	[0.028-0.045] unit decrease	Affymetrix [323858] (imputed)	N
612	chr6_dbb_hap3	3668440	3668441	rs2894255	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	BTNL2	rs2894255-T	NR	7E-16		0.0344273	[0.026-0.043] unit decrease	Affymetrix [127266] (imputed)	N
612	chr6_dbb_hap3	3668440	3668441	rs2894255	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p21.32	BTNL2	rs2894255-T	NR	2E-11		0.0284523	[0.02-0.037] unit decrease	Affymetrix [323858] (imputed)	N
612	chr6_dbb_hap3	3668693	3668694	rs3135359	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p21.32	HLA-DRADQA1	rs3135359-C	0.71	9E-21		1.21	[1.18-1.24]	Illumina [at least 560000] (imputed)	N
613	chr6_dbb_hap3	3670882	3670883	rs6935999	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.32	NR	rs6935999-A	0.011	8E-8	(women)	0.839311	[0.54-1.14] unit increase	Affymetrix [up to 8900000] (imputed)	N
613	chr6_dbb_hap3	3670882	3670883	rs6935999	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.32	NR	rs6935999-A	0.011	3E-11		0.563282	[0.4-0.73] unit increase	Affymetrix [up to 8900000] (imputed)	N
613	chr6_dbb_hap3	3671002	3671003	rs3135353	33941608	Khan A	2021-05-03	J Am Soc Nephrol	Medical Records-Based Genetic Studies of the Complement System.	Complement C4 levels	3,247 European ancestry individuals, 600 African ancestry individuals, 151 East Asian ancestry individuals	NA	6p21.32	C4	rs3135353-C	0.15	2E-33	(EA)	0.4	[0.34-0.45] unit increase	NR [NR] (imputed)	N
613	chr6_dbb_hap3	3671002	3671003	rs3135353	33941608	Khan A	2021-05-03	J Am Soc Nephrol	Medical Records-Based Genetic Studies of the Complement System.	Complement C4 levels	3,247 European ancestry individuals, 600 African ancestry individuals, 151 East Asian ancestry individuals	NA	6p21.32	C4	rs3135353-C	0.12	5E-35		0.4	[0.34-0.45] unit increase	NR [NR] (imputed)	N
613	chr6_dbb_hap3	3671106	3671107	rs3135350	24962563	Rubicz R	2014-07-01	Genet Epidemiol	Genome-wide genetic and transcriptomic investigation of variation in antibody response to dietary antigens.	Food antigen IgG levels	1,367 Mexican Americans from 63 families	NA	6p21.32	NOTCH4, HLA-DRA, BTNL2	rs3135350-G	0.046	9E-8	(Gliadin)	0.51	[NR] unit increase	Illumina [944565] (imputed)	N
613	chr6_dbb_hap3	3673766	3673767	rs9268576	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p21.32	HLA-DRA	rs9268576-C	0.359	2E-8		0.111	[0.072-0.15] unit decrease	Affymetrix, Illumina [7374092] (imputed)	N
613	chr6_dbb_hap3	3673766	3673767	rs9268576	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on CD33+ HLA DR+ CD14dim	1,578 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9268576-C	0.46709	3E-10		0.262	[0.18-0.34] unit decrease	Illumina [16958370] (imputed)	N
613	chr6_dbb_hap3	3673766	3673767	rs9268576	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on CD33+ HLA DR+ CD14-	1,579 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9268576-C	0.46711	3E-20		0.3825	[0.3-0.46] unit decrease	Illumina [16961968] (imputed)	N
613	chr6_dbb_hap3	3673781	3673782	rs2105903	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in diabetes	70,762 European ancestry individuals, 20,967 African American individuals	NA	6p21.32	HLA-DRA	rs2105903-A	0.838	4E-12		0.821	[0.59-1.05] unit increase	Affymetrix [NR] (imputed)	N
613	chr6_dbb_hap3	3673851	3673852	rs3129843	26362759	Rothwell S	2015-09-11	Ann Rheum Dis	Dense genotyping of immune-related loci in idiopathic inflammatory myopathies confirms HLA alleles as the strongest genetic risk factor and suggests different genetic background for major clinical subgroups.	Idiopathic inflammatory myopathy	2,556 European ancestry cases, 15,651 European ancestry controls		6p21.32	HLA	rs3129843-G	0.11	9E-133		2.74	[2.53-2.97]	Illumina [90536]	N
613	chr6_dbb_hap3	3673851	3673852	rs3129843	26362759	Rothwell S	2015-09-11	Ann Rheum Dis	Dense genotyping of immune-related loci in idiopathic inflammatory myopathies confirms HLA alleles as the strongest genetic risk factor and suggests different genetic background for major clinical subgroups.	Dermatomyositis or juvenile dermatomyositis	879 European dermatomyositis cases, 15,651 European juvenile dermatomyositis ancestry controls		6p21.32	HLA	rs3129843-G		2E-48		2.18	[1.97-2.42]	Illumina [90536]	N
613	chr6_dbb_hap3	3674271	3674272	rs78566116	29782485	Rueger S	2018-05-21	PLoS Genet	Evaluation and application of summary statistic imputation to discover new height-associated loci.	Height	253,288 European ancestry individuals	336,474 European ancestry individuals	6p21.32	intergenic	rs78566116-T	0.0766992859032002	4E-12		0.011949114	unit decrease	NR [9276018] (imputed)	N
613	chr6_dbb_hap3	3675434	3675435	rs3129849	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PRTN3	5,367 Icelandic ancestry individuals	NA	6p21.32		rs3129849-A	0.2684	2E-16		0.176044	[0.13-0.22] unit increase	Illumina [7506463] (imputed)	N
613	chr6_dbb_hap3	3675909	3675910	rs3129852	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DRA	rs3129852-G	NR	3E-8		0.019398	[0.013-0.026] unit decrease	Affymetrix [319769] (imputed)	N
613	chr6_dbb_hap3	3675988	3675989	rs17202717	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs17202717-T	0.2	9E-9		4.33	[3.31-5.67]	Illumina [NR] (imputed)	N
613	chr6_dbb_hap3	3676773	3676774	rs3129853	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Prostate cancer	7,438 White British ancestry cases, 118,206 White British ancestry controls	NA	6p21.32		rs3129853-?	NR	2E-6		0.913903	[0.88-0.95]	NR [680312]	N
613	chr6_dbb_hap3	3677312	3677313	rs4321864	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DRA	rs4321864-A	NR	1E-10		0.019351	[0.013-0.025] unit increase	Affymetrix [319769] (imputed)	N
613	chr6_dbb_hap3	3677312	3677313	rs4321864	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DRA	rs4321864-A	NR	5E-10		0.0188026	[0.013-0.025] unit increase	Affymetrix [319769] (imputed)	N
613	chr6_dbb_hap3	3677312	3677313	rs4321864	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DRA	rs4321864-A	NR	2E-11		0.0204042	[0.014-0.026] unit increase	Affymetrix [321169] (imputed)	N
613	chr6_dbb_hap3	3677312	3677313	rs4321864	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on Hematopoietic Stem Cell	1,634 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs4321864-A	0.29062	4E-9		0.2523	[0.17-0.34] unit increase	Illumina [16999215] (imputed)	N
613	chr6_dbb_hap3	3677312	3677313	rs4321864	26450422	DeLorenze GN	2015-10-08	J Infect Dis	Polymorphisms in HLA Class II Genes Are Associated With Susceptibility to Staphylococcus aureus Infection in a White Population.	Staphylococcus aureus infection	4,701 European ancestry cases, 45,344 European ancestry controls	NA	6p21.32	HLA-DRA	rs4321864-A	NR	9E-8		1.13	[NR]	Affymetrix [at least 584535] (imputed)	N
613	chr6_dbb_hap3	3679064	3679065	rs3129859	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	6p21.32	NR	rs3129859-G	0.67	1E-12		1.06	[1.04-1.08]	Illumina [20370935] (imputed)	N
613	chr6_dbb_hap3	3679064	3679065	rs3129859	28130311	Tan W	2017-01-27	Gut	Genome-wide association study identifies HLA-DR variants conferring risk of HBV-related acute-on-chronic liver failure.	Acute-on-chronic liver failure in hepatitis B	389 Chinese ancestry cases, 391 Chinese ancestry controls	901 Chinese ancestry cases,  1,686 Chinese ancestry controls	6p21.32	HLA-DQB1, HLA-DRA	rs3129859-C	0.15	7E-19		1.83	[1.60-2.09]	Affymetrix [654960]	N
613	chr6_dbb_hap3	3679161	3679162	rs17496307	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs17496307-T	0.2	9E-9		4.33	[3.31-5.67]	Illumina [NR] (imputed)	N
613	chr6_dbb_hap3	3679204	3679205	rs3129860	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CFTR	5,361 Icelandic ancestry individuals	NA	6p21.32		rs3129860-A	0.2255	1E-13		0.165583	[0.12-0.21] unit increase	Illumina [7506463] (imputed)	N
613	chr6_dbb_hap3	3679204	3679205	rs3129860	23321320	Urabe Y	2013-01-12	J Hepatol	A genome-wide association study of HCV-induced liver cirrhosis in the Japanese population identifies novel susceptibility loci at the MHC region.	Hepatitis C induced liver cirrhosis	682 Japanese ancestry cases, 1,045 Japanese ancestry controls	936 Japanese ancestry cases, 3,809 Japanese ancestry controls	6p21.32	intergenic	rs3129860-A	0.231	1E-9		1.36	[1.22-1.49]	Illumina [431618]	N
613	chr6_dbb_hap3	3679342	3679343	rs3135338	20159113	Jakkula E	2010-02-12	Am J Hum Genet	Genome-wide association study in a high-risk isolate for multiple sclerosis reveals associated variants in STAT3 gene.	Multiple sclerosis	68 Finland founder cases, 136 Finland founder controls	83 Finland founder cases, 365 Finland founder controls 3,285 European ancestry cases, 6,379 European ancestry controls, 1,202 cases, 3,399 controls	6p21.32	HLA	rs3135338-A	0.13	2E-25		3.43	[NR]	Illumina [297343]	N
613	chr6_dbb_hap3	3679388	3679389	rs9268610	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on CD33dim HLA DR+ CD11b-	1,635 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9268610-C	0.23837	2E-14		0.3692	[0.28-0.46] unit decrease	Illumina [16999305] (imputed)	N
613	chr6_dbb_hap3	3681014	3681015	rs9268615	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DRA	rs9268615-A	NR	5E-9		0.0185721	[0.012-0.025] unit decrease	Affymetrix [323123] (imputed)	N
613	chr6_dbb_hap3	3681244	3681245	rs28732213	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs28732213-A	0.041	4E-80	(Ubiquitin carboxyl-terminal hydrolase 25, USP25.9215.117.3)	1.13	[1.01-1.25] unit increase	Affymetrix [10572788] (imputed)	N
613	chr6_dbb_hap3	3682502	3682503	rs3129868	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	6p21.32	NR	rs3129868-?	NR	6E-10		0.077	[0.052-0.101] unit increase	Illumina [at least 560000] (imputed)	N
613	chr6_dbb_hap3	3683990	3683991	rs9268628	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on HLA DR+ Natural Killer	2,971 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9268628-C	0.60641	2E-23		0.2999	[0.24-0.36] unit decrease	Illumina [17967059] (imputed)	N
613	chr6_dbb_hap3	3684456	3684457	rs3129871	23472185	Mero IL	2013-03-05	PLoS One	Oligoclonal band status in Scandinavian multiple sclerosis patients is associated with specific genetic risk alleles.	Multiple sclerosis (OCB status)	1,367 European ancestry OCB positive cases, 161 European ancestry OCB negative cases, 428 European ancestry controls	NA	6p21.32	HLA-DRA	rs3129871-?	NR	1E-16	(OCB positive vs. controls)	1.98	[1.68-2.32]	Illumina [495970]	N
613	chr6_dbb_hap3	3684456	3684457	rs3129871	23472185	Mero IL	2013-03-05	PLoS One	Oligoclonal band status in Scandinavian multiple sclerosis patients is associated with specific genetic risk alleles.	Multiple sclerosis (OCB status)	1,367 European ancestry OCB positive cases, 161 European ancestry OCB negative cases	3,029 European ancestry OCB positive cases, 374 European ancestry OCB negative cases	6p21.32	HLA-DRA	rs3129871-?	NR	6E-15		1.72	[1.59-1.86]	Illumina [495970]	N
613	chr6_dbb_hap3	3684587	3684588	rs9268633	33143745	Andlauer TFM	2020-11-04	BMC Med	Treatment- and population-specific genetic risk factors for anti-drug antibodies against interferon-beta: a GWAS.	Neutralising antibody response to interferon beta therapy in multiple sclerosis (antibody titre; IFN?-1a subcutaneous and intramuscular)	up to 2,000 German and Swedish ancestry individuals	up to 757 German and Swedish ancestry individuals	6p21.32		rs9268633-A	0.39	1E-17		0.2	[-0.0392-0.0392] unit increase	Illumina [8550834] (imputed)	N
613	chr6_dbb_hap3	3685414	3685415	rs2395179	29534301	Nishida N	2018-03-13	Hepatology	Key HLA-DRB1-DQB1 haplotypes and role of the BTNL2 gene for response to a hepatitis B vaccine.	Response to hepatitis B vaccine	107 Japanese ancestry low responder individuals, 351 Japanese ancestry intermediate responder individuals, 735 Japanese ancestry high responder individuals	NA	6p21.32	HLA-DRA	rs2395179-?		5E-14		0.221	unit decrease	Affymetrix [427664]	N
613	chr6_dbb_hap3	3686156	3686157	rs9268644	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DRA	rs9268644-A	NR	4E-13		0.022277	[0.016-0.028] unit increase	Affymetrix [323123] (imputed)	N
613	chr6_dbb_hap3	3686156	3686157	rs9268644	28425483	Qiu F	2017-04-20	Nat Commun	A genome-wide association study identifies six novel risk loci for primary biliary cholangitis.	Primary biliary cholangitis	1,122 Han Chinese ancestry cases, 4,036 Han Chinese ancestry controls	907 Han Chinese ancestry cases, 2,127 Han Chinese ancestry controls	6p21.32	HLA-DRA	rs9268644-?	0.823	8E-31		1.9607843	[1.75-2.22]	Illumina [776516]	N
613	chr6_dbb_hap3	3686607	3686608	rs3135394	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p21.32	HLA-DRA	rs3135394-G	0.344	3E-33				Illumina [118177]	N
613	chr6_dbb_hap3	3686607	3686608	rs3135394	24097067	Lessard CJ	2013-11-01	Nat Genet	Variants at multiple loci implicated in both innate and adaptive immune responses are associated with Sjogren's syndrome.	Sjogren's syndrome	395 European ancestry cases, 1,975 European ancestry controls	1,243 European ancestry cases, 4,779 European ancestry controls	6p21.32	HLA-DRA	rs3135394-G	0.11	5E-113		3.52	[3.02-4.10]	Illumina [648937]	N
613	chr6_dbb_hap3	3686607	3686608	rs3135394	19838195	Gateva V	2009-11-01	Nat Genet	A large-scale replication study identifies TNIP1, PRDM1, JAZF1, UHRF1BP1 and IL10 as risk loci for systemic lupus erythematosus.	Systemic lupus erythematosus	1,310 European ancestry cases, 7,859 European ancestry controls	1,963 European ancestry cases, 4,329 European ancestry controls	6p21.32	HLA-DRB1	rs3135394-G	0.1	2E-60		1.98	[1.84-2.14]	Illumina [~ 2100000] (imputed)	N
613	chr6_dbb_hap3	3686637	3686638	rs9268645	19430480	Barrett JC	2009-05-10	Nat Genet	Genome-wide association study and meta-analysis find that over 40 loci affect risk of type 1 diabetes.	Type 1 diabetes	7,514 European ancestry cases, 9,045 European ancestry controls	4,267 European ancestry cases, 4,670 European ancestry controls, 4,342 European ancestry trios from 2,319 families	6p21.32	MHC	rs9268645-?	NR	1E-100				Affymetrix, Illumina [841622] (imputed)	N
613	chr6_dbb_hap3	3687017	3687018	rs3129879	34212547	An J	2021-07-01	Allergy Asthma Immunol Res	Genome-Wide Association Study of Korean Asthmatics: A Comparison With UK Asthmatics.	Adult asthma	1,386 Korean ancestry cases, 5,205 Korean ancestry controls	NA	6p21.32		rs3129879-A	0.34	3E-6		0.78	[0.71-0.87]	Affymetrix [4922160] (imputed)	N
613	chr6_dbb_hap3	3687166	3687167	rs9268652	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Hepatitis B	1,425 European ancestry cases, 218,180 European ancestry controls	NA	6p21.32	HLA-DRA	rs9268652-G	0.74	3E-9		1.32	[1.25-1.38]	Illumina [at least 560000] (imputed)	N
613	chr6_dbb_hap3	3687640	3687641	rs3129882	24511991	Hill-Burns EM	2014-02-10	BMC Genomics	Identification of a novel Parkinson's disease locus via stratified genome-wide association study.	Parkinson's disease	1,565 European ancestry sproadic Parkinson's disease cases, 435 European ancestry familial Parkinson's disease cases, 1,986 European ancestry controls	1,528 European ancestry sporadic Parkinson's disease cases, 707 European ancestry familial Parkinson's disease cases, 796 European ancestry controls	6p21.32	HLA	rs3129882-G	0.395	5E-10	(Sporadic)	1.38	[1.24-1.52]	Illumina [811597]	N
613	chr6_dbb_hap3	3687640	3687641	rs3129882	24511991	Hill-Burns EM	2014-02-10	BMC Genomics	Identification of a novel Parkinson's disease locus via stratified genome-wide association study.	Parkinson's disease	1,565 European ancestry sproadic Parkinson's disease cases, 435 European ancestry familial Parkinson's disease cases, 1,986 European ancestry controls	1,528 European ancestry sporadic Parkinson's disease cases, 707 European ancestry familial Parkinson's disease cases, 796 European ancestry controls	6p21.32	HLA	rs3129882-G	0.395	3E-8		1.31	[1.19-1.43]	Illumina [811597]	N
613	chr6_dbb_hap3	3687640	3687641	rs3129882	21779181	Gorlova O	2011-07-14	PLoS Genet	Identification of novel genetic markers associated with clinical phenotypes of systemic sclerosis through a genome-wide association strategy.	Systemic sclerosis	2,296 European ancestry cases, 5,172 European ancestry controls	3,175 European ancestry cases, 4,210 European ancestry controls	6p21.32	HLA-DRA	rs3129882-?	0.44	2E-27	(ATA positive)	2.17	[1.88-2.50]	Illumina [NR] (imputed)	N
613	chr6_dbb_hap3	3687640	3687641	rs3129882	20711177	Hamza TH	2010-08-15	Nat Genet	Common genetic variation in the HLA region is associated with late-onset sporadic Parkinson's disease.	Parkinson's disease	2,000 European ancestry cases, 1,986 European ancestry controls	Up to 1,447 cases, 1,468 controls	6p21.32	HLA-DRA	rs3129882-G	0.40	2E-10		1.26	[1.17-1.35]	Illumina [811597]	N
613	chr6_dbb_hap3	3687818	3687819	rs17496549	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs17496549-T	0.2	9E-9		4.33	[3.31-5.67]	Illumina [NR] (imputed)	N
613	chr6_dbb_hap3	3688686	3688687	rs3129886	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Matrix metalloproteinase-10 levels	21,758 European ancestry individuals	9,173 individuals	6p21.32		rs3129886-T	0.25	6E-7		0.0572	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
613	chr6_dbb_hap3	3688801	3688802	rs3129887	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DRA	rs3129887-A	NR	4E-11		0.0236955	[0.017-0.031] unit decrease	Affymetrix [319769] (imputed)	N
613	chr6_dbb_hap3	3688801	3688802	rs3129887	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DRA	rs3129887-A	NR	2E-10		0.0226864	[0.016-0.03] unit decrease	Affymetrix [319769] (imputed)	N
613	chr6_dbb_hap3	3688801	3688802	rs3129887	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DRA	rs3129887-A	NR	2E-12		0.0256	[0.019-0.033] unit decrease	Affymetrix [321169] (imputed)	N
613	chr6_dbb_hap3	3688801	3688802	rs3129887	28062665	Kawashima M	2017-01-05	Hum Mol Genet	Genome-wide association studies identify PRKCB as a novel genetic susceptibility locus for primary biliary cholangitis in the Japanese population.	Primary biliary cholangitis	1,381 Japanese ancestry cases, 1,505 Japanese ancestry controls	512 Japanese ancestry cases, 6,512 Japanese ancestry controls	6p21.32	HLA-DRA, HLA-DRB1	rs3129887-?	NR	2E-29		3.13	[2.54-3.85]	Affymetrix [425290]	N
613	chr6_dbb_hap3	3689051	3689052	rs9268659	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	HLA-DRA	rs9268659-T	NR	2E-9		0.0171616	[0.012-0.023] unit decrease	Affymetrix [321114] (imputed)	N
613	chr6_dbb_hap3	3689051	3689052	rs9268659	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Perceived unattractiveness to mosquitoes	16,576 European ancestry individuals	NA	6p21.32	HLA-DRA	rs9268659-T	0.42	2E-9		0.139734	[0.094-0.186] unit increase	Illumina [7433384] (imputed)	N
613	chr6_dbb_hap3	3689486	3689487	rs2239805	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.32	HLA-DRA, HLA-DRB9	rs2239805-G	0.169007	1E-12	(EA, Complement C4)	0.4079	[0.3-0.52] unit decrease	Affymetrix [509946]	N
613	chr6_dbb_hap3	3689756	3689757	rs7192	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs7192-T	0.49	3E-9		0.15	[0.11-0.22]	Illumina [NR] (imputed)	N
613	chr6_dbb_hap3	3689756	3689757	rs7192	22541561	Zhao H	2012-04-26	Am J Hum Genet	A genome-wide association study reveals that variants within the HLA region are associated with risk for nonobstructive azoospermia.	Non-obstructive azoospermia	802 Han Chinese ancestry cases, 1,863 Han Chinese ancestry controls	1,424 Han Chinese ancestry cases, 2,713 Han Chinese ancestry controls	6p21.32	HLA-DRA	rs7192-T	0.26	3E-6		1.29	[NR]	Affymetrix, Illumina [912924]	N
613	chr6_dbb_hap3	3689956	3689957	rs2239802	28008999	Ostrowski J	2016-12-23	Sci Rep	Genetic architecture differences between pediatric and adult-onset inflammatory bowel diseases in the Polish population.	Ulcerative colitis	269 Polish ancestry child cases, 259 Polish ancestry adult cases, 582 Polish ancestry controls	121 Polish ancestry child cases, 85 Polish ancestry adult cases, 352 Polish ancestry controls	6p21.32	HLA-DRA	rs2239802-?		2E-7	(Adults)	1.7715251	[1.43-2.19]	Illumina [2612357]	N
613	chr6_dbb_hap3	3690506	3690507	rs4935356	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	6p21.32	HLA-DRA	rs4935356-T	0.756088	8E-22		0.0245501	[0.02-0.03] unit decrease	Affymetrix [NR] (imputed)	N
613	chr6_dbb_hap3	3690513	3690514	rs3135390	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DRA	rs3135390-C	NR	6E-9		0.0224213	[0.015-0.03] unit increase	Affymetrix [323123] (imputed)	N
613	chr6_dbb_hap3	3690553	3690554	rs3177928	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs3177928-A	0.21	2E-8		4.13	[3.16-5.38]	Illumina [NR] (imputed)	N
613	chr6_dbb_hap3	3690553	3690554	rs3177928	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.32	NR	rs3177928-G	NR	1E-9		0.033	unit decrease	Affymetrix [at least 7091467] (imputed)	N
613	chr6_dbb_hap3	3690553	3690554	rs3177928	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.32	NR	rs3177928-G	0.856	5E-7	(EA)	0.03	unit decrease	Affymetrix [at least 7091467] (imputed)	N
613	chr6_dbb_hap3	3690553	3690554	rs3177928	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.32	NR	rs3177928-G	NR	1E-15		0.049	unit decrease	Affymetrix [at least 7091467] (imputed)	N
613	chr6_dbb_hap3	3690553	3690554	rs3177928	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.32	NR	rs3177928-G	0.856	5E-12	(EA)	0.045	unit decrease	Affymetrix [at least 7091467] (imputed)	N
613	chr6_dbb_hap3	3690553	3690554	rs3177928	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.32	NR	rs3177928-G	NR	9E-10		0.038	unit decrease	Affymetrix [at least 7091467] (imputed)	N
613	chr6_dbb_hap3	3690553	3690554	rs3177928	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.32	NR	rs3177928-G	0.856	2E-7	(EA)	0.035	unit decrease	Affymetrix [at least 7091467] (imputed)	N
613	chr6_dbb_hap3	3690553	3690554	rs3177928	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Total cholesterol levels	32,576 East Asian ancestry individuals, 187,365 European ancestry individuals	10,855 Chinese ancestry individuals	6p21.32	HLA	rs3177928-A	0.181	5E-22	(Trans-ethnic initial)	0.0482	[0.038-0.058] unit increase (EA Beta values)	Affymetrix, Illumina [up to 1900000] (imputed)	N
613	chr6_dbb_hap3	3690553	3690554	rs3177928	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	LDL cholesterol levels	32,285 East Asian ancestry individuals, 173,082 European ancestry individuals	8,478 Chinese ancestry individuals	6p21.32	HLA	rs3177928-A	0.181	5E-17	(Trans-ethnic initial)	0.0452	[0.035-0.055] unit increase (EA Beta value)	Affymetrix, Illumina [~ 1900000] (imputed)	N
613	chr6_dbb_hap3	3690553	3690554	rs3177928	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	6p21.32	HLA	rs3177928-A	0.17	3E-17		0.045	[NR] unit increase	NR [NR] (imputed)	N
613	chr6_dbb_hap3	3690553	3690554	rs3177928	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	6p21.32	HLA	rs3177928-A	0.17	1E-21		0.048	[NR] unit increase	NR [NR] (imputed)	N
613	chr6_dbb_hap3	3690553	3690554	rs3177928	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	LDL cholesterol	95,454 European ancestry individuals	NA	6p21.32	HLA	rs3177928-A	0.16	2E-15		1.83	[1.36-2.3] mg/dL increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
613	chr6_dbb_hap3	3690553	3690554	rs3177928	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	Cholesterol, total	100,184 European ancestry individuals	NA	6p21.32	HLA	rs3177928-A	0.16	4E-19		2.31	[1.78-2.84] mg/dL increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
613	chr6_dbb_hap3	3690598	3690599	rs7194	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.32	HLA-DRA	rs7194-A	0.5927	6E-9		0.0221	[0.015-0.03] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
613	chr6_dbb_hap3	3690598	3690599	rs7194	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6p21.32	BTNL2	rs7194-A	0.5927	5E-8		0.0247	[0.016-0.034] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
613	chr6_dbb_hap3	3690598	3690599	rs7194	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.32	HLA-DRA	rs7194-?	0.5927	1E-7				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
613	chr6_dbb_hap3	3690657	3690658	rs7195	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs7195-A	0.49	3E-9		0.15	[0.11-0.22]	Illumina [NR] (imputed)	N
613	chr6_dbb_hap3	3691169	3691170	rs3135388	19525953	De Jager PL	2009-06-14	Nat Genet	Meta-analysis of genome scans and replication identify CD6, IRF8 and TNFRSF1A as new multiple sclerosis susceptibility loci.	Multiple sclerosis	2,624 European ancestry cases, 7,220 European ancestry controls	2,215 European ancestry cases, 2,116 European ancestry controls		HLA-DRB1	rs3135388-A	0.22	4E-225		2.75	[2.46-3.07]	Affymetrix, Illumina [~ 2560000] (imputed)	N
613	chr6_dbb_hap3	3691169	3691170	rs3135388	17660530	Hafler DA	2007-07-29	N Engl J Med	Risk alleles for multiple sclerosis identified by a genomewide study.	Multiple sclerosis	931 European ancestry trios, 2,431 European ancestry controls	609 European ancestry trios, 2,322 European ancestry cases, 2,987 European ancestry controls		HLA-DRA	rs3135388-A	0.23	9E-81		1.99	[1.84-2.15]	Affymetrix [334923]	N
613	chr6_dbb_hap3	3691212	3691213	rs2213586	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs2213586-A	0.49	3E-9		0.15	[0.11-0.22]	Illumina [NR] (imputed)	N
613	chr6_dbb_hap3	3691268	3691269	rs2213585	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs2213585-G	0.48	3E-9		0.15	[0.11-0.22]	Illumina [NR] (imputed)	N
613	chr6_dbb_hap3	3691577	3691578	rs2227139	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs2227139-G	0.49	3E-9		0.15	[0.11-0.22]	Illumina [NR] (imputed)	N
613	chr6_dbb_hap3	3691577	3691578	rs2227139	19820697	Soranzo N	2009-10-11	Nat Genet	A genome-wide meta-analysis identifies 22 loci associated with eight hematological parameters in the HaemGen consortium.	Hematological parameters	4,627 European ancestry individuals	9,316 European ancestry individuals	6p21.32	intergenic	rs2227139-G	NR	1E-7	(WBC)	0.02	[0.01-0.03] 10^9/l increase	Affymetrix, Illumina [~ 2110000] (imputed)	N
613	chr6_dbb_hap3	3691663	3691664	rs3129889	22190364	Patsopoulos NA	2011-12-01	Ann Neurol	Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.	Multiple sclerosis	5,545 European ancestry cases, 12,153 European ancestry controls	NA	6p21.32	HLA-DRB1	rs3129889-G	0.20	1E-206		2.97	[NR]	Affymetrix, Illumina [2529394]	N
613	chr6_dbb_hap3	3691675	3691676	rs3763326	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (mother's age at death or mother's attained age)	up to 699,000 individuals	NA	6p21.32	NR	rs3763326-A		5E-6				Illumina [458525]	N
613	chr6_dbb_hap3	3691948	3691949	rs3763327	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs3763327-G	0.49	3E-9		0.15	[0.11-0.22]	Illumina [NR] (imputed)	N
613	chr6_dbb_hap3	3692391	3692392	rs3129890	26272072	Jiang X	2015-08-13	Rheumatology (Oxford)	An Immunochip-based interaction study of contrasting interaction effects with smoking in ACPA-positive versus ACPA-negative rheumatoid arthritis.	ACPA-positive rheumatoid arthritis (smoking interaction)	340 European ancestry never-smoker cases, 493 European ancestry ever-smoker cases, 746 European ancestry never-smoker controls, 994 European ancestry ever-smoker controls	187 European ancestry never-smoker cases, 421 European ancestry ever-smoker cases, 461 European ancestry never-smoker controls, 447 European ancestry ever-smoker controls	6p21.32	NR	rs3129890-?	NR	1E-10	(adjusted for HLA shared epitope)	2.5	[1.89-3.57]	Illumina [133648] (imputed)	N
613	chr6_dbb_hap3	3692391	3692392	rs3129890	21804548	Hirota T	2011-07-31	Nat Genet	Genome-wide association study identifies three new susceptibility loci for adult asthma in the Japanese population.	Asthma	1,532 Japanese ancestry cases, 3,304 Japanese ancestry controls	5,639 Japanese ancestry cases, 24,608 Japanese ancestry controls	6p21.32	HLA-DRA	rs3129890-T	0.61	5E-13		1.15	[1.11-1.20]	Illumina [458847]	N
613	chr6_dbb_hap3	3692405	3692406	rs9268670	33768542	Liu Y	2021-03-26	Clin Pharmacol Ther	Class II HLA Variants Associate with Risk of Pegaspargase Hypersensitivity.	Asparaginase hypersensitivity in acute lymphoblastic leukemia	310 African ancestry individuals, 798 Native American individuals, 387 individuals	NA	6p21.32	NR	rs9268670-T	NR	7E-7		0.56	[NR]	Illumina [NR] (imputed)	N
613	chr6_dbb_hap3	3692405	3692406	rs9268670	33768542	Liu Y	2021-03-26	Clin Pharmacol Ther	Class II HLA Variants Associate with Risk of Pegaspargase Hypersensitivity.	Asparaginase hypersensitivity in acute lymphoblastic leukemia	310 African ancestry individuals, 798 Native American individuals, 112 Asian ancestry individuals, 387 individuals	NA	6p21.32	HLA-DRA	rs9268670-T	NR	2E-7		0.55		Illumina [NR] (imputed)	N
613	chr6_dbb_hap3	3692408	3692409	rs9268671	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs9268671-A	0.339438	4E-8		0.023014	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
613	chr6_dbb_hap3	3692408	3692409	rs9268671	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DRA	rs9268671-A	NR	4E-19		0.0265032	[0.021-0.032] unit decrease	Affymetrix [319769] (imputed)	N
613	chr6_dbb_hap3	3692408	3692409	rs9268671	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DRA	rs9268671-A	NR	1E-12		0.0233694	[0.017-0.03] unit decrease	Affymetrix [323858] (imputed)	N
613	chr6_dbb_hap3	3692408	3692409	rs9268671	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DRA	rs9268671-A	NR	5E-18		0.0256545	[0.02-0.031] unit decrease	Affymetrix [319769] (imputed)	N
613	chr6_dbb_hap3	3692408	3692409	rs9268671	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	HLA-DRA	rs9268671-A	NR	4E-11		0.0217286	[0.015-0.028] unit decrease	Affymetrix [127266] (imputed)	N
613	chr6_dbb_hap3	3692408	3692409	rs9268671	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DRA	rs9268671-A	NR	2E-11		0.0199636	[0.014-0.026] unit increase	Affymetrix [321016] (imputed)	N
613	chr6_dbb_hap3	3692408	3692409	rs9268671	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DRA	rs9268671-A	NR	3E-22		0.0312717	[0.025-0.038] unit increase	Affymetrix [323123] (imputed)	N
613	chr6_dbb_hap3	3692408	3692409	rs9268671	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	6p21.32	HLA-DRA	rs9268671-G	0.661005	1E-11		0.018096138	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
613	chr6_dbb_hap3	3692784	3692785	rs9268677	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DRA	rs9268677-A	NR	4E-15		0.0222453	[0.017-0.028] unit increase	Affymetrix [319769] (imputed)	N
613	chr6_dbb_hap3	3692784	3692785	rs9268677	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DRA	rs9268677-A	NR	1E-14		0.0218771	[0.016-0.027] unit increase	Affymetrix [319769] (imputed)	N
613	chr6_dbb_hap3	3693197	3693198	rs3129891	26272072	Jiang X	2015-08-13	Rheumatology (Oxford)	An Immunochip-based interaction study of contrasting interaction effects with smoking in ACPA-positive versus ACPA-negative rheumatoid arthritis.	ACPA-positive rheumatoid arthritis (smoking interaction)	340 European ancestry never-smoker cases, 493 European ancestry ever-smoker cases, 746 European ancestry never-smoker controls, 994 European ancestry ever-smoker controls	187 European ancestry never-smoker cases, 421 European ancestry ever-smoker cases, 461 European ancestry never-smoker controls, 447 European ancestry ever-smoker controls	6p21.32	NR	rs3129891-?	NR	2E-9	(adjusted for HLA shared epitope)	2.5	[1.89-3.7]	Illumina [133648] (imputed)	N
613	chr6_dbb_hap3	3693270	3693271	rs9469112	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	6p21.32	HLA-DRA	rs9469112-T	0.1734	1E-10		6.4424515	NR z-unit increase	Affymetrix, Illumina [up to 10847151] (imputed)	N
613	chr6_dbb_hap3	3693328	3693329	rs28895028	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs28895028-A	0.21	2E-8		4.13	[3.16-5.38]	Illumina [NR] (imputed)	N
613	chr6_dbb_hap3	3693975	3693976	rs12529093	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs12529093-G	0.21	2E-8		4.13	[3.16-5.38]	Illumina [NR] (imputed)	N
613	chr6_dbb_hap3	3694092	3694093	rs13209234	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs13209234-A	0.21	2E-8		4.13	[3.16-5.38]	Illumina [NR] (imputed)	N
613	chr6_dbb_hap3	3694196	3694197	rs13209059	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs13209059-G	0.21	2E-8		4.13	[3.16-5.38]	Illumina [NR] (imputed)	N
613	chr6_dbb_hap3	3695354	3695355	rs28895057	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs28895057-G	0.098	1E-15	(Ubiquitin carboxyl-terminal hydrolase 25, USP25.9215.117.3)	0.39	[0.29-0.49] unit increase	Affymetrix [10572788] (imputed)	N
613	chr6_dbb_hap3	3695892	3695893	rs6937167	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.32	NR	rs6937167-AT	0.01	3E-9	(women)	1.02959	[0.7-1.36] unit increase	Affymetrix [up to 8900000] (imputed)	N
613	chr6_dbb_hap3	3696126	3696127	rs6937545	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DRA	rs6937545-A	NR	3E-16		0.0268745	[0.02-0.033] unit decrease	Affymetrix [323858] (imputed)	N
613	chr6_dbb_hap3	3696126	3696127	rs6937545	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	HLA-DRA	rs6937545-A	NR	4E-14		0.0248417	[0.018-0.031] unit decrease	Affymetrix [127266] (imputed)	N
613	chr6_dbb_hap3	3697372	3697372	rs202087577	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	6p21.32	Intergenic	rs202087577-?	NR	3E-21		0.0536425	[0.043-0.065] unit increase	Illumina [13520550] (imputed)	N
613	chr6_dbb_hap3	3697564	3697565	rs28895103	33649182	Penova M	2021-03-01	Proc Natl Acad Sci U S A	Genome wide association study of HTLV-1-associated myelopathy/tropical spastic paraparesis in the Japanese population.	HTLV-1 associated myelopathy	731 Japanese ancestry cases, 846 Japanese ancestry controls	NA	6p21.32		rs28895103-G	0.95	1E-8		0.44	[0.33-0.58]	Illumina [126394]	N
613	chr6_dbb_hap3	3698059	3698060	rs3135384	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	Systemic lupus erythematosus	1,639 East Asian ancestry cases, 2,410 East Asian ancestry controls	NA			rs3135384-G	NR	7E-26		0.5329	[0.43-0.63] unit decrease	Illumina [NR] (imputed)	N
613	chr6_dbb_hap3	3698279	3698280	rs7754768	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs7754768-C	0.49	7E-10		0.14	[0.10-0.20]	Illumina [NR] (imputed)	N
613	chr6_dbb_hap3	3698302	3698303	rs9268775	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	6p21.32	HLA-DRA	rs9268775-T	0.0541	3E-6		0.0884	[0.052-0.125] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
613	chr6_dbb_hap3	3698599	3698600	rs9268781	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DRB9	rs9268781-T	NR	5E-17		0.0247953	[0.019-0.031] unit increase	Affymetrix [321016] (imputed)	N
613	chr6_dbb_hap3	3698959	3698960	rs9268786	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	6p21.32		rs9268786-C	NR	3E-28		0.0241	[0.02-0.028] unit increase	Affymetrix, Illumina [20529698] (imputed)	N
613	chr6_dbb_hap3	3699047	3699048	rs111255178	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.32	HLA-DRB9	rs111255178-T	0.1435	3E-6		0.0558	[0.032-0.079] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
613	chr6_dbb_hap3	3699177	3699178	rs9268791	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD25 on CD28+ CD4+ T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9268791-C	0.74777	1E-10		0.2077	[0.14-0.27] unit decrease	Illumina [17954496] (imputed)	N
613	chr6_dbb_hap3	3699573	3699574	rs3129897	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	HLA-DRB9	rs3129897-A	0.156	2E-29	(Interleukin-21, IL21.7124.18.3)	0.37	[0.31-0.43] unit decrease	Affymetrix [10572788] (imputed)	N
613	chr6_dbb_hap3	3699608	3699609	rs28895136	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs28895136-C	0.21	2E-8		4.13	[3.16-5.38]	Illumina [NR] (imputed)	N
613	chr6_dbb_hap3	3700296	3700297	rs2097442	34642315	Ferreiro-Iglesias A	2021-10-12	Nat Commun	Germline determinants of humoral immune response to HPV-16 protect against oropharyngeal cancer.	Oropharynx cancer and human papilloma virus 16 negative oropharyngeal cancer	2,359 European ancestry cases, 565 European ancestry controls	NA	6p21.32		rs2097442-A	NR	1E-6		1.2355		Illumina [up to 7574753] (imputed)	N
613	chr6_dbb_hap3	3700296	3700297	rs2097442	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Non-Hodgkin's lymphoma	2,400 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs2097442-A	NR	3E-19		1.3187393	NR	Affymetrix [7846216] (imputed)	N
613	chr6_dbb_hap3	3701628	3701629	rs140302846	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	6p21.32	NR	rs140302846-?	NR	1E-15				Affymetrix [~ 8270000] (imputed)	N
613	chr6_dbb_hap3	3701628	3701629	rs140302846	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs140302846-?	NR	7E-13				Affymetrix [~ 8270000] (imputed)	N
613	chr6_dbb_hap3	3702031	3702032	rs9268807	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	HLA	rs9268807-C	0.208	5E-117		1.604	[1.56-1.65]	Illumina [11270530] (imputed)	N
613	chr6_dbb_hap3	3702149	3702150	rs13220657	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs13220657-T	0.21	2E-8		4.13	[3.16-5.38]	Illumina [NR] (imputed)	N
613	chr6_dbb_hap3	3702488	3702489	rs9268811	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DRB9	rs9268811-T	NR	1E-14		0.0222291	[0.017-0.028] unit increase	Affymetrix [321169] (imputed)	N
613	chr6_dbb_hap3	3702712	3702713	rs9268813	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	6p21.32	NR	rs9268813-?	NR	8E-14				Affymetrix [~ 8270000] (imputed)	N
613	chr6_dbb_hap3	3702712	3702713	rs9268813	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.32	NR	rs9268813-?	NR	8E-15				Affymetrix [~ 8270000] (imputed)	N
613	chr6_dbb_hap3	3702712	3702713	rs9268813	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs9268813-?	NR	1E-17				Affymetrix [~ 8270000] (imputed)	N
613	chr6_dbb_hap3	3703000	3703001	rs7763262	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	6p21.32	HLA-DQB1, HLA-DQA1, HLA-DRB1	rs7763262-C	0.72	1E-10	(East Asian)	1.3	[NR]	Illumina [> 1000000] (imputed)	N
613	chr6_dbb_hap3	3703000	3703001	rs7763262	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	6p21.32	HLA-DQB1, HLA-DQA1, HLA-DRB1	rs7763262-C	0.69	2E-38		1.41	[NR]	Illumina [> 1000000] (imputed)	N
613	chr6_dbb_hap3	3703000	3703001	rs7763262	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	6p21.32	HLA-DQB1, HLA-DQA1, HLA-DRB1	rs7763262-C	0.69	1E-30	(EA)	1.49	[NR]	Illumina [> 1000000] (imputed)	N
613	chr6_dbb_hap3	3703416	3703417	rs28895205	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs28895205-G	0.21	2E-8		4.13	[3.16-5.38]	Illumina [NR] (imputed)	N
613	chr6_dbb_hap3	3703596	3703597	rs7744304	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DRB9	rs7744304-G	NR	9E-27		0.0345924	[0.028-0.041] unit increase	Affymetrix [323123] (imputed)	N
613	chr6_dbb_hap3	3703871	3703872	rs41291794	27927641	Ombrello MJ	2016-12-07	Ann Rheum Dis	Genetic architecture distinguishes systemic juvenile idiopathic arthritis from other forms of juvenile idiopathic arthritis: clinical and therapeutic implications.	Systemic juvenile idiopathic arthritis	178 European ancestry cases, 434 European ancestry controls, 81 Hispanic/Latin American cases, 177 Hispanic/Latin American controls, 511 cases, 6,336 controls	NA	6p21.32	HLA-DRA	rs41291794-?		4E-15	(Additive)	2.1	[1.80-2.60]	Illumina [5600610] (imputed)	N
613	chr6_dbb_hap3	3704092	3704093	rs6457592	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DRB9	rs6457592-C	NR	2E-10		0.0179035	[0.012-0.023] unit decrease	Affymetrix [321016] (imputed)	N
613	chr6_dbb_hap3	3705112	3705113	rs113164910	27668658	Iotchkova V	2016-11-01	Nat Genet	Discovery and refinement of genetic loci associated with cardiometabolic risk using dense imputation maps.	Cardiometabolic and hematological traits	up to 35,981 European ancestry individuals	up to 102,505 European ancestry individuals	6p21.32	HLA-DRA	rs113164910-AAC		4E-54	(WBC)	0.008	[0.008-0.008] unit increase	Affymetrix, Illumina [17000000] (imputed)	N
613	chr6_dbb_hap3	3705113	3705113	rs5875374	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	6p21.32	HLA-DRB9	rs5875374-AAC	0.6671	2E-39		0.04909979	[0.042-0.056] unit increase	Affymetrix [~ 2500000] (imputed)	N
613	chr6_dbb_hap3	3705207	3705208	rs1547422	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD45 on CD4+ T cell	3,113 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs1547422-G	0.77074	1E-9		0.204	[0.14-0.27] unit decrease	Illumina [18030777] (imputed)	N
613	chr6_dbb_hap3	3705288	3705289	rs1548306	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycoprotein acetyls levels	115,082 European ancestry individuals	NA	6p21.32		rs1548306-A	0.337505	3E-30		0.0494261	[0.041-0.058] unit decrease	NR [11722792] (imputed)	N
613	chr6_dbb_hap3	3705288	3705289	rs1548306	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA	6p21.32	NR	rs1548306-?	NR	9E-7		0.0374	[0.023-0.052] unit increase	Illumina [at least 560000] (imputed)	N
613	chr6_dbb_hap3	3705288	3705289	rs1548306	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	6p21.32	Intergenic	rs1548306-T	NR	6E-10		0.0234279	[0.016-0.031] unit decrease	Illumina [13519193] (imputed)	N
613	chr6_dbb_hap3	3705288	3705289	rs1548306	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.32	Intergenic	rs1548306-T	NR	1E-11	(women)	0.0332253	[0.024-0.043] unit decrease	Illumina [13520550] (imputed)	N
613	chr6_dbb_hap3	3705288	3705289	rs1548306	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.32	HLA-DRA, HLA-DRB5	rs1548306-T	0.634	9E-14		0.0256004	[0.019-0.032] unit decrease	Illumina [13520550] (imputed)	N
613	chr6_dbb_hap3	3705288	3705289	rs1548306	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	6p21.32	HLA-DRA, HLA-DRB5	rs1548306-T	0.634	5E-29		0.0446701	[0.037-0.052] unit decrease	Illumina [13520550] (imputed)	N
613	chr6_dbb_hap3	3705477	3705478	rs28732229	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs28732229-T	0.21	2E-8		4.13	[3.16-5.38]	Illumina [NR] (imputed)	N
613	chr6_dbb_hap3	3705844	3705845	rs9268831	33558538	Gebresilase T	2021-02-08	Sci Rep	Replication of HLA class II locus association with susceptibility to podoconiosis in three Ethiopian ethnic groups.	Podoconiosis	1,137 Ethiopian ancestry cases, 1,152 Ethiopian ancestry controls	NA	6p21.32	HLA-DRB9	rs9268831-T	0.46	2E-9				Illumina [2201695]	N
613	chr6_dbb_hap3	3705844	3705845	rs9268831	29534301	Nishida N	2018-03-13	Hepatology	Key HLA-DRB1-DQB1 haplotypes and role of the BTNL2 gene for response to a hepatitis B vaccine.	Response to hepatitis B vaccine	107 Japanese ancestry low responder individuals, 351 Japanese ancestry intermediate responder individuals, 735 Japanese ancestry high responder individuals	NA	6p21.32	HLA-DRAB5	rs9268831-?		1E-13		0.192	unit decrease	Affymetrix [427664]	N
613	chr6_dbb_hap3	3705885	3705886	rs9268832	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs9268832-T	0.49	7E-10		0.14	[0.10-0.20]	Illumina [NR] (imputed)	N
613	chr6_dbb_hap3	3706211	3706212	rs9268835	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DRB9	rs9268835-A	NR	4E-20		0.0276383	[0.022-0.034] unit increase	Affymetrix [319769] (imputed)	N
613	chr6_dbb_hap3	3706211	3706212	rs9268835	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DRB9	rs9268835-A	NR	4E-20		0.0276817	[0.022-0.034] unit increase	Affymetrix [319769] (imputed)	N
613	chr6_dbb_hap3	3706211	3706212	rs9268835	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	HLA-DRB9	rs9268835-A	NR	7E-13		0.0218474	[0.016-0.028] unit increase	Affymetrix [321114] (imputed)	N
613	chr6_dbb_hap3	3706381	3706382	rs6903608	24920014	Cozen W	2014-06-12	Nat Commun	A meta-analysis of Hodgkin lymphoma reveals 19p13.3 TCF3 as a novel susceptibility locus.	Hodgkin's lymphoma	1,816 European ancestry cases, 7,877 European ancestry controls	1,281 European ancestry cases, 3,218 European ancestry controls	6p21.32	HLA class II, HLA class I	rs6903608-C	0.30	7E-31		1.64	[1.51-1.78]	Affymetrix, Illumina [1004829] (imputed)	N
613	chr6_dbb_hap3	3706381	3706382	rs6903608	24149102	Frampton M	2013-10-22	Nat Commun	Variation at 3p24.1 and 6q23.3 influences the risk of Hodgkin's lymphoma.	Hodgkin's lymphoma	1,465 European ancestry cases, 6,417 European ancestry controls	1,071 European ancestry cases, 953 cases, 1,853 controls	6p21.32	NR	rs6903608-G	0.27	5E-27		1.62	[NR]	Illumina [296129]	N
613	chr6_dbb_hap3	3706381	3706382	rs6903608	21037568	Enciso-Mora V	2010-10-31	Nat Genet	A genome-wide association study of Hodgkin's lymphoma identifies new susceptibility loci at 2p16.1 (REL), 8q24.21 and 10p14 (GATA3).	Hodgkin's lymphoma	589 European ancestry cases, 5,199 European ancestry controls	2,057 European ancestry cases, 3,416 European ancestry controls	6p21.32	HLA-DRA	rs6903608-G	0.27	3E-50		1.7	[1.58-1.82]	Illumina [504374]	N
613	chr6_dbb_hap3	3706868	3706869	rs9268839	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	6p21.32	HLA-DRB1	rs9268839-A	NR	1E-100		0.737171	[0.52-0.95] unit decrease	Illumina [8380626] (imputed)	N
613	chr6_dbb_hap3	3706868	3706869	rs9268839	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	6p21.32	HLA-DRB1	rs9268839-A	0.750718391	3E-7	(AA)	0.623752	[0.39-0.86] unit decrease	Illumina [8380626] (imputed)	N
613	chr6_dbb_hap3	3706868	3706869	rs9268839	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	6p21.32	HLA-DRB1	rs9268839-A	0.56	4E-134	(East Asian)	0.64731	[0.6-0.7] unit decrease	Illumina [8380626] (imputed)	N
613	chr6_dbb_hap3	3706868	3706869	rs9268839	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	6p21.32	HLA-DRB1	rs9268839-A	0.55	1E-250	(EA)	0.90412	[0.87-0.94] unit decrease	Illumina [8380626] (imputed)	N
613	chr6_dbb_hap3	3706868	3706869	rs9268839	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	6p21.32	HLA-DRB1	rs9268839-G	0.45	1E-250	(EA)	2.47	[2.39-2.55]	Affymetrix, Illumina [up to 9739303] (imputed)	N
613	chr6_dbb_hap3	3706868	3706869	rs9268839	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	6p21.32	HLA-DRB1	rs9268839-G	0.45	1E-250		2.28	[2.22-2.34]	Affymetrix, Illumina [up to 9739303] (imputed)	N
613	chr6_dbb_hap3	3706868	3706869	rs9268839	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	6p21.32	HLA-DRB1	rs9268839-G	0.44	2E-145	(East Asian)	1.9	[1.81-1.99]	Affymetrix, Illumina [up to 9739303] (imputed)	N
613	chr6_dbb_hap3	3707300	3707301	rs9268845	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	HLA-DRB9	rs9268845-T	NR	1E-11		0.0248689	[0.018-0.032] unit decrease	Affymetrix [127266] (imputed)	N
613	chr6_dbb_hap3	3707341	3707342	rs9268846	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DRB9	rs9268846-G	NR	5E-10		0.0201434	[0.014-0.026] unit increase	Affymetrix [323858] (imputed)	N
613	chr6_dbb_hap3	3707341	3707342	rs9268846	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	HLA-DRB9	rs9268846-G	NR	2E-9		0.019558	[0.013-0.026] unit increase	Affymetrix [127266] (imputed)	N
613	chr6_dbb_hap3	3707399	3707400	rs9268848	32890573	Yan Q	2020-09-02	J Allergy Clin Immunol	A genome-wide association study of asthma hospitalizations in adults.	Exacerbations requiring hospitalisation in asthma	1,658 British ancestry cases, 32,509 British ancestry controls	NA	6p21.32	NR	rs9268848-G	0.42	2E-6		0.84	[NR]	Affymetrix [87696888] (imputed)	N
613	chr6_dbb_hap3	3707399	3707400	rs9268848	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	6p21.32	HLA-DRB9	rs9268848-A	0.551419	2E-25		0.025138251	[0.02-0.03] unit increase	Affymetrix [93095623] (imputed)	N
613	chr6_dbb_hap3	3707399	3707400	rs9268848	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	6p21.32	NR	rs9268848-?	NR	3E-20				Affymetrix [~ 8270000] (imputed)	N
613	chr6_dbb_hap3	3707399	3707400	rs9268848	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	6p21.32	HLA-DRA	rs9268848-A	0.6148	6E-9	(East Asian)	0.0347	[0.023-0.046] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
613	chr6_dbb_hap3	3707678	3707679	rs9268851	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein H6PD	5,364 Icelandic ancestry individuals	NA	6p21.32		rs9268851-A	0.2209	1E-96		0.45447	[0.41-0.5] unit increase	Illumina [7506463] (imputed)	N
613	chr6_dbb_hap3	3707739	3707740	rs9268853	30552108	Kawabata Y	2018-12-14	Diabetes	A genome-Wide Association Study Confirming a Strong Effect of HLA and Identifying Variants in CSAD/lnc-ITGB7-1 on Chromosome 12q13.13 Associated with Susceptibility to Fulminant Type 1 Diabetes.	Fulminant type 1 diabetes	257 Japanese ancestry cases, 419 Japanese ancestry controls	NA	6p21.32	HLA	rs9268853-?	NR	2E-23		3.18	[2.53-4.01]	Affymetrix [426851] (imputed)	N
613	chr6_dbb_hap3	3707739	3707740	rs9268853	23511034	Yang SK	2013-04-01	Inflamm Bowel Dis	Genome-wide association study of ulcerative colitis in Koreans suggests extensive overlapping of genetic susceptibility with Caucasians.	Ulcerative colitis	388 Korean ancestry cases, 739 Korean ancestry controls	417 Korean ancestry cases, 732 Korean ancestry controls	6p21.32	MHC	rs9268853-T	0.64	3E-6		1.37	[1.20-1.56]	Illumina [581060]	N
613	chr6_dbb_hap3	3707739	3707740	rs9268853	23349640	Vijai J	2013-01-17	PLoS Genet	Susceptibility loci associated with specific and shared subtypes of lymphoid malignancies.	Lymphoma	275 Follicular non-Hodgkin's Lymphoma cases, 269 diffuse large B-cell non-Hodgkin's Lymphoma cases, 198 other non-Hodgkin's Lymphoma cases, 202 Hodgkin's Lymphoma cases, 4,044 controls	202 European ancestry Follicular non-Hodgkin's Lymphoma cases, 367 European ancestry diffuse large B-cell non-Hodgkin's Lymphoma cases, 577 European ancestry other non-Hodgkin's Lymphoma cases, 99 European ancestry Hodgkin's Lymphoma cases, 2,596 European ancestry controls	6p21.32	BTLN2, HLA-DRA, HLA-DRB5, HLA-DRB1	rs9268853-C	NR	2E-10	(FL)	1.56	[NR]	Affymetrix [530583]	N
613	chr6_dbb_hap3	3707739	3707740	rs9268853	21297633	Anderson CA	2011-02-06	Nat Genet	Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47.	Ulcerative colitis	6,687 European ancestry cases, 19,718 European ancestry controls	9,628 European ancestry cases, 12,917 European ancestry controls	6p21.32	HLA-DRA, HLA-DRB5, BTNL2, HLA-DRB1, HLA-DQA1	rs9268853-T	0.66	1E-55		1.4	[1.34-1.47]	Affymetrix, Illumina [~ 1100000] (imputed)	N
613	chr6_dbb_hap3	3707815	3707816	rs9268856	24943344	Ferrari R	2014-07-01	Lancet Neurol	Frontotemporal dementia and its subtypes: a genome-wide association study.	Frontotemporal dementia	1,377 European ancestry behavioural variant cases, 308 European ancestry Semantic dementia cases, 269 European ancestry Progressive nonfluent aphasia cases, 200 European ancestry Frontotremporal dementia with motor neuron disease cases, up to 4,308 European ancestry controls	690 European ancestry behavioural variant cases, 190 European ancestry Semantic dementia cases, 221 European ancestry Progressive nonfluent aphasia cases, 94 European ancestry Frontotremporal dementia with motor neuron disease cases, 177 European ancestry Frontotemporal lobar degeneration cases, up to 5,094 European ancestry controls	6p21.32	HLA-DRA, HLA-DRB5, BTNL2	rs9268856-C	0.748	6E-9	(All Frontotemporal dementia)	1.24	[1.16-1.32]	Illumina [6026385] (imputed)	N
613	chr6_dbb_hap3	3709240	3709241	rs9268877	29905830	Lee HS	2018-08-01	J Crohns Colitis	An Intergenic Variant rs9268877 Between HLA-DRA and HLA-DRB Contributes to the Clinical Course and Long-term Outcome of Ulcerative Colitis.	Poor prognosis in Crohn's disease	243 Korean ancestry poor prognosis cases, 364 Korean ancestry good prognosis controls	145 Korean ancestry poor prognosis cases, 129 Korean ancestry good prognosis controls	6p21.32	NA	rs9268877-A	0.35	1E-8		1.72	[1.43-2.07]	Illumina [up to 519662]	N
613	chr6_dbb_hap3	3709240	3709241	rs9268877	19915572	Barrett JC	2009-11-15	Nat Genet	Genome-wide association study of ulcerative colitis identifies three new susceptibility loci, including the HNF4A region.	Ulcerative colitis	2,361 European ancestry cases, 5,417 European ancestry controls	2,321 European ancestry cases, 4,818 European ancestry controls	6p21.32	MHC	rs9268877-?	NR	4E-23				Affymetrix [NR]	N
613	chr6_dbb_hap3	3709240	3709241	rs9268877	18836448	Franke A	2008-10-05	Nat Genet	Sequence variants in IL10, ARPC2 and multiple other loci contribute to ulcerative colitis susceptibility.	Ulcerative colitis	1,167 European ancestry cases, 777 European ancestry controls	1,855 European ancestry cases, 3,091 European ancestry controls	6p21.32	HLA-DRA, BTNL2	rs9268877-T	0.45	6E-18		1.45	[1.33-1.58]	Affymetrix [355262]	N
613	chr6_dbb_hap3	3710061	3710062	rs9268896	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs9268896-A	0.232	3E-20	(Complement C4, C4A.C4B.4481.34.2)	0.28	[0.22-0.34] unit decrease	Affymetrix [10572788] (imputed)	N
613	chr6_dbb_hap3	3710173	3710174	rs9268905	28041642	Carmona FD	2016-12-29	Am J Hum Genet	A Genome-wide Association Study Identifies Risk Alleles in Plasminogen and P4HA2 Associated with Giant Cell Arteritis.	Giant cell arteritis	2,134 European ancestry cases, 9,125 European ancestry controls	NA	6p21.32	HLA-DRA, HLA-DRB1	rs9268905-?	0.37	2E-54		1.79	[1.67-1.93]	Illumina [1844133] (imputed)	N
613	chr6_dbb_hap3	3710173	3710174	rs9268905	21602797	Wright FA	2011-05-22	Nat Genet	Genome-wide association and linkage identify modifier loci of lung disease severity in cystic fibrosis at 11p13 and 20q13.2.	Cystic fibrosis severity	2,317 European ancestry cases, 177 cases	898 European ancestry sibling pair cases, 75 sibling pair cases	6p21.32	HLA-DRA	rs9268905-C	0.32	1E-7				Illumina [~ 2609000] (imputed)	N
613	chr6_dbb_hap3	3710596	3710597	rs78218185	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Asthma	13,015 East Asian ancestry cases, 162,933 East Asian ancestry controls	NA	6p21.32		rs78218185-A	0.135952394	4E-43		0.27918372	[0.24-0.32] unit increase	Illumina [13429513] (imputed)	N
613	chr6_dbb_hap3	3710931	3710932	rs9268923	26819262	Zhou Y	2016-01-27	Mult Scler	Genetic loci for Epstein-Barr virus nuclear antigen-1 are associated with risk of multiple sclerosis.	Epstein Barr virus nuclear antigen 1 IgG levels	1,243 parents and up to 2,356 children from 992 families, 1,956 Mexican American individuals		6p21.32	HLA-DRB5, HLA-DQA1, HLA-DRA, HLA-DRB1	rs9268923-C	0.552	1E-11	(non-Mexican American parents and children)	0.18	unit increase	Illumina [up to 2428201] (imputed)	N
613	chr6_dbb_hap3	3710931	3710932	rs9268923	26819262	Zhou Y	2016-01-27	Mult Scler	Genetic loci for Epstein-Barr virus nuclear antigen-1 are associated with risk of multiple sclerosis.	Epstein Barr virus nuclear antigen 1 IgG levels	1,243 parents and up to 2,356 children from 992 families, 1,956 Mexican American individuals		6p21.32	HLA-DRA, HLA-DRB5, HLA-DQA1, HLA-DRB1	rs9268923-C	0.552	1E-13	(non-Mexican American parents)	0.252	unit increase	Illumina [up to 2428201] (imputed)	N
613	chr6_dbb_hap3	3710931	3710932	rs9268923	26819262	Zhou Y	2016-01-27	Mult Scler	Genetic loci for Epstein-Barr virus nuclear antigen-1 are associated with risk of multiple sclerosis.	Epstein Barr virus nuclear antigen 1 IgG levels	1,243 parents and up to 2,356 children from 992 families, 1,956 Mexican American individuals		6p21.32	HLA-DRA, HLA-DRB5, HLA-DQA1, HLA-DRB1	rs9268923-C	0.552	1E-11	(non-Mexican American sero-positive children)	0.225	unit increase	Illumina [up to 2428201] (imputed)	N
613	chr6_dbb_hap3	3710931	3710932	rs9268923	20228798	Franke A	2010-03-14	Nat Genet	Genome-wide association study for ulcerative colitis identifies risk loci at 7q22 and 22q13 (IL17REL).	Ulcerative colitis	1,043 European ancestry cases, 1,703 European ancestry controls	2,539 European ancestry cases, 5,428 European ancestry controls	6p21.32	HLA-DRA	rs9268923-C	0.67	4E-15		1.45	[1.33-1.59]	Affymetrix [1897764] (imputed)	N
613	chr6_dbb_hap3	3711065	3711066	rs9268925	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	6p21.32	Intergenic	rs9268925-C	NR	1E-23		0.0788801	[0.063-0.094] unit increase	Illumina [13520550] (imputed)	N
613	chr6_dbb_hap3	3711154	3711155	rs9469120	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Yeast infection	52,218 European ancestry cases, 10,235 European ancestry controls	NA	6p21.32	NR	rs9469120-?	NR	9E-8		0.0846	[0.054-0.116] unit decrease	Illumina [at least 560000] (imputed)	N
613	chr6_dbb_hap3	3711222	3711223	rs113585425	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs113585425-C	0.19	4E-8		4.04	[3.10-5.28]	Illumina [NR] (imputed)	N
613	chr6_dbb_hap3	3711264	3711265	rs2395185	25186300	Terao C	2014-09-03	Arthritis Rheumatol	Association between antinuclear antibodies and the HLA class II locus and heterogeneous characteristics of staining patterns: the Nagahama study.	Antinuclear antibody levels	3,185 Japanese ancestry individuals	3,963 Japanese ancestry individuals	6p21.32	HLA-DRA, HLA-DRB5	rs2395185-?	NR	1E-11		0.25	unit increase	Illumina [303506]	N
613	chr6_dbb_hap3	3711264	3711265	rs2395185	23143601	Lan Q	2012-11-11	Nat Genet	Genome-wide association analysis identifies new lung cancer susceptibility loci in never-smoking women in Asia.	Lung cancer	5,510 East Asian ancestry cases, 4,544 East Asian ancestry controls	1,099 East Asian ancestry cases, 2,913 East Asian ancestry controls	6p21.32	HLA class II	rs2395185-T	0.35	1E-8		1.17	[1.11-1.23]	Illumina [596032]	N
613	chr6_dbb_hap3	3711264	3711265	rs2395185	22286212	Urayama KY	2012-01-27	J Natl Cancer Inst	Genome-wide association study of classical Hodgkin lymphoma and Epstein-Barr virus status-defined subgroups.	Hodgkin's lymphoma	1,200 European ancestry cases, 6,417 European ancestry controls	563 European ancestry cases, 613 European ancestry controls	6p21.32	HLA-DRA	rs2395185-?	NR	4E-31	(Total cHL)	1.82	[1.67-2.00]	Illumina [502514]	N
613	chr6_dbb_hap3	3711264	3711265	rs2395185	20228799	McGovern DP	2010-03-14	Nat Genet	Genome-wide association identifies multiple ulcerative colitis susceptibility loci.	Ulcerative colitis	2,693 European ancestry cases, 6,791 European ancestry controls	2,009 European ancestry cases, 1,580 European ancestry controls	6p21.32	C6orf10, BTNL2, HLA	rs2395185-G	NR	9E-23		1.49	[NR]	Illumina [266047]	N
613	chr6_dbb_hap3	3711264	3711265	rs2395185	19915573	Asano K	2009-11-15	Nat Genet	A genome-wide association study identifies three new susceptibility loci for ulcerative colitis in the Japanese population.	Ulcerative colitis	376 Japanese ancestry cases, 934 Japanese ancestry controls	376 Japanese ancestry cases, 1,097 Japanese ancestry controls	6p21.32	intergenic	rs2395185-G	0.61	5E-22		1.92	[1.68-2.19]	Illumina [513923]	N
613	chr6_dbb_hap3	3711264	3711265	rs2395185	19122664	Silverberg MS	2009-01-04	Nat Genet	Ulcerative colitis-risk loci on chromosomes 1p36 and 12q15 found by genome-wide association study.	Ulcerative colitis	1,022 European ancestry cases, 2,503 European ancestry controls	1,387 European ancestry cases, 1,115 European ancestry controls	6p21.32	HLA-DQB1, HLA-DRA, BTNL2, HLA-DRB5, HLA-DRB1, HLA-DQA1	rs2395185-?	0.67	1E-16		1.52		Illumina [280748]	N
613	chr6_dbb_hap3	3711373	3711374	rs2894257	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p21.32	HLA-DRADQA2	rs2894257-C	0.53	8E-36		1.36	[1.33-1.39]	Illumina [at least 560000] (imputed)	N
613	chr6_dbb_hap3	3711415	3711416	rs2395190	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic sinusitis	4,617 East Asian ancestry cases, 152,226 East Asian ancestry controls	NA	6p21.32		rs2395190-T	0.301110024	1E-29		0.26669198	[0.22-0.31] unit decrease	Illumina [13426486] (imputed)	N
613	chr6_dbb_hap3	3711843	3711844	rs9268948	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DRB9	rs9268948-G	NR	2E-9		0.0189254	[0.013-0.025] unit decrease	Affymetrix [319769] (imputed)	N
613	chr6_dbb_hap3	3711843	3711844	rs9268948	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DRB9	rs9268948-G	NR	2E-9		0.0190762	[0.013-0.025] unit decrease	Affymetrix [319769] (imputed)	N
613	chr6_dbb_hap3	3711856	3711857	rs35880697	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6p21.32	NR	rs35880697-?	NR	7E-10				Affymetrix [~ 8270000] (imputed)	N
613	chr6_dbb_hap3	3713435	3713436	rs4947340	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	6p21.32	HLA-DRB9	rs4947340-T	0.40103	1E-52		0.0369333	[0.032-0.042] unit decrease	Affymetrix [93095623] (imputed)	N
613	chr6_dbb_hap3	3713448	3713449	rs4947257	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p21.32	NR	rs4947257-?	NR	1E-12		0.0988	[0.071-0.126] unit decrease	Illumina [at least 560000] (imputed)	N
613	chr6_dbb_hap3	3713643	3713644	rs9268989	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs9268989-A	0.378	6E-14		0.856	[0.81-0.9]	Illumina [11270530] (imputed)	N
613	chr6_dbb_hap3	3714333	3714334	rs9391782	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	6p21.32		rs9391782-C	0.36641	1E-6		0.033747	[0.02-0.047] unit increase	Affymetrix [15580782] (imputed)	N
613	chr6_dbb_hap3	3715615	3715616	rs9269029	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs9269029-A	0.176	2E-8		0.866	[0.82-0.92]	Illumina [11270530] (imputed)	N
613	chr6_dbb_hap3	3715685	3715686	rs9405038	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	High density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	6p21.32	HLA-DRA, HLA-DRB5	rs9405038-?		1E-13		0.0366	[0.027-0.046] unit decrease	Illumina [31500000] (imputed)	N
613	chr6_dbb_hap3	3716314	3716315	rs9269041	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on Dendritic Cell	2,871 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9269041-A	0.60762	1E-9		0.2062	[0.14-0.27] unit decrease	Illumina [17926566] (imputed)	N
613	chr6_dbb_hap3	3718393	3718395	rs145954018	30674883	Jin Y	2019-01-23	Nat Commun	Early-onset autoimmune vitiligo associated with an enhancer variant haplotype that upregulates class II HLA expression.	Vitiligo (early onset)	704 European ancestry cases, 9,031 European ancestry controls	375 European ancestry cases, 1,455 European ancestry controls	6p21.32	NR	rs145954018-?	NR	3E-54		4.62	[4.42-4.82]	NR [up to 494043] (imputed)	N
613	chr6_dbb_hap3	3718815	3718816	rs9357149	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.32		rs9357149-C	0.982	4E-24				Affymetrix [10369434] (imputed)	N
613	chr6_dbb_hap3	3719041	3719042	rs9269080	30578877	Dahlin A	2018-12-19	J Allergy Clin Immunol	Large-scale, multi-ethnic genome-wide association study identifies novel loci contributing to asthma susceptibility in adults.	Adult asthma	16,274 European ancestry cases, 38,269 European ancestry controls	10,365 European ancestry cases, 16,110 European ancestry controls, cases and controls (see Moffatt et al 2010)	6p21.32	HLA-DRB9	rs9269080-?	NR	1E-8		1.098901	[1.05-1.11]	Affymetrix [7230512] (imputed)	N
613	chr6_dbb_hap3	3719172	3719173	rs9269081	29196614	Sud A	2017-12-01	Nat Commun	Genome-wide association study of classical Hodgkin lymphoma identifies key regulators of disease susceptibility.	Nodular sclerosis Hodgkin lymphoma	1,278 European ancestry cases, 14,325 European ancestry controls	1,586 cases, 3,069 controls	6p21.32	HLA-DRA	rs9269081-?	NR	2E-39		1.82	[1.67-2.00]	Illumina [> 10000000] (imputed)	N
613	chr6_dbb_hap3	3719771	3719772	rs2071805	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Osteoporosis	8,520 European ancestry cases, 479,981 European ancestry controls, 9,794 East Asian ancestry cases, 168,932 East Asian ancestry controls	NA	6p21.32		rs2071805-T	NR	9E-10		0.144	[0.098-0.19] unit decrease	Affymetrix, Illumina [25844994] (imputed)	N
613	chr6_dbb_hap3	3720194	3720195	rs34452045	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs34452045-G	0.145	3E-31		0.694	[0.63-0.75]	Illumina [11270530] (imputed)	N
613	chr6_dbb_hap3	3721297	3721298	rs9269108	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p21.32	NR	rs9269108-?	NR	3E-6		4.641	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
613	chr6_dbb_hap3	3721340	3721341	rs9269109	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8+ Natural Killer T Absolute Count	3,652 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9269109-C	0.36376	3E-8		0.1671	[0.11-0.23] unit increase	Illumina [18427348] (imputed)	N
613	chr6_dbb_hap3	3721340	3721341	rs9269109	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28- CD25++ CD8+ T cell Absolute Count	3,130 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9269109-C	0.35879	1E-8		0.1597	[0.11-0.21] unit increase	Illumina [18189521] (imputed)	N
613	chr6_dbb_hap3	3721873	3721874	rs28895243	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	6p21.32	HLA-DRB9	rs28895243-G	0.039859	5E-20		0.05294043	[0.042-0.064] unit decrease	Affymetrix [93095623] (imputed)	N
613	chr6_dbb_hap3	3722142	3722143	rs116353692	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (adrenergics, inhalants)	5,880 East Asian ancestry cases, 172,846 East Asian ancestry controls	NA	6p21.32		rs116353692-C	0.139167381	2E-13		0.21394032	[0.16-0.27] unit increase	Illumina [13429980] (imputed)	N
613	chr6_dbb_hap3	3722272	3722273	rs12194148	21156761	Padyukov L	2010-12-14	Ann Rheum Dis	A genome-wide association study suggests contrasting associations in ACPA-positive versus ACPA-negative rheumatoid arthritis.	Rheumatoid arthritis	1,147 European ancestry ACPA positive RA cases, 774 European ancestry ACPA negative RA cases, 1,079 European ancestry controls	887 European ancestry ACPA positive RA cases, 1,218 European ancestry controls	6p21.32	HLA	rs12194148-?	NR	5E-58	(ACPA-positive RA vs controls)			Illumina [1723056] (imputed)	N
613	chr6_dbb_hap3	3722624	3722625	rs12195582	25279986	Skibola CF	2014-10-02	Am J Hum Genet	Genome-wide association study identifies five susceptibility loci for follicular lymphoma outside the HLA region.	Follicular lymphoma	2,728 European ancestry cases, 7,758 European ancestry controls	1,795 European ancestry cases, 5,586 European ancestry controls	6p21.32	HLA	rs12195582-T	0.465	5E-100		1.78	[1.69-1.88]	Illumina [up to 21554489]	N
613	chr6_dbb_hap3	3723224	3723225	rs9269136	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DRB9	rs9269136-G	NR	1E-11		0.0239787	[0.017-0.031] unit decrease	Affymetrix [321169] (imputed)	N
613	chr6_dbb_hap3	3723468	3723473	rs200093869	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Iron deficiency anemia	12,317 European ancestry cases, 468,624 European ancestry controls, 4,618 East Asian ancestry cases, 174,057 East Asian ancestry controls	NA	6p21.32		rs200093869-C	NR	1E-12		0.1142	[0.083-0.146] unit increase	Affymetrix, Illumina [25844780] (imputed)	N
613	chr6_dbb_hap3	3723576	3723577	rs9269143	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DRB9	rs9269143-T	NR	2E-9		0.0207074	[0.014-0.027] unit decrease	Affymetrix [319769] (imputed)	N
613	chr6_dbb_hap3	3723576	3723577	rs9269143	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DRB9	rs9269143-T	NR	1E-8		0.0198652	[0.013-0.027] unit decrease	Affymetrix [319769] (imputed)	N
613	chr6_dbb_hap3	3723768	3723769	rs9378212	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	6p21.32	NR	rs9378212-T	0.469078	7E-211		0.059685	[0.056-0.063] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
613	chr6_dbb_hap3	3723768	3723769	rs9378212	27286809	Ligthart S	2016-06-10	BMC Genomics	Bivariate genome-wide association study identifies novel pleiotropic loci for lipids and inflammation.	C-reactive protein levels or HDL-cholesterol levels (pleiotropy)	65,000 individuals (C-reactive protein), 99,900 individuals (HDL-cholesterol)	NA	6p21.32	HLA-DRA	rs9378212-T	NR	7E-10				NR [2501543] (imputed)	N
613	chr6_dbb_hap3	3723993	3723994	rs28895267	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.32		rs28895267-C	0.518	1E-110				Affymetrix [10369434] (imputed)	N
613	chr6_dbb_hap3	3723993	3723994	rs28895267	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DRB9	rs28895267-T	NR	9E-16		0.0253192	[0.019-0.031] unit increase	Affymetrix [323858] (imputed)	N
613	chr6_dbb_hap3	3723993	3723994	rs28895267	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	HLA-DRB9	rs28895267-T	NR	4E-15		0.0247032	[0.019-0.031] unit increase	Affymetrix [127266] (imputed)	N
613	chr6_dbb_hap3	3724069	3724070	rs17209866	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p21.32	NR	rs17209866-A	0.453955	2E-344				Affymetrix, Illumina [24649327] (imputed)	N
613	chr6_dbb_hap3	3724533	3724534	rs17203563	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28- CD127- CD25++ CD8+ T cell Absolute Count	3,130 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs17203563-A	0.26383	5E-8		0.1789	[0.11-0.24] unit increase	Illumina [18189521] (imputed)	N
613	chr6_dbb_hap3	3724791	3724792	rs7453498	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Dementia and core Alzheimer's disease neuropathologic changes	up to 3,887 cases, up to 1,027 controls	NA	6p21.32	intergenic	rs7453498-C	0.8656	3E-6	(Complete)	0.8142	[0.47-1.16] unit increase	Affymetrix, Illumina [NR] (imputed)	N
613	chr6_dbb_hap3	3725159	3725160	rs2395191	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic obstructive pulmonary disease	13,530 European ancestry cases, 454,945 European ancestry controls, 4,017 East Asian ancestry cases, 162,653 East Asian ancestry controls	NA	6p21.32		rs2395191-C	NR	9E-10		0.077	[0.052-0.102] unit increase	Affymetrix, Illumina [25843162] (imputed)	N
613	chr6_dbb_hap3	3725159	3725160	rs2395191	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8 on Natural Killer T	3,103 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs2395191-C	0.36584	2E-9		0.1751	[0.12-0.23] unit increase	Illumina [18027570] (imputed)	N
613	chr6_dbb_hap3	3725159	3725160	rs2395191	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs2395191-C	NR	6E-10		1.1764705	[1.12-1.24]	Affymetrix [7846216] (imputed)	N
613	chr6_dbb_hap3	3725717	3725718	rs2395192	33204752	Butler-Laporte G	2020-09-24	Open Forum Infect Dis	Genetic Determinants of Antibody-Mediated Immune Responses to Infectious Diseases Agents: A Genome-Wide and HLA Association Study.	Epstein-Barr virus EA-D antibody levels	7,763 White British ancestry individuals	NA	6p21.32	HLA-DRB9	rs2395192-C	0.440	3E-16		0.13	[0.099-0.161] unit decrease	NR [25472218] (imputed)	N
613	chr6_dbb_hap3	3725717	3725718	rs2395192	31102405	Labreche K	2019-05-17	Neuro Oncol	A genome-wide association study identifies susceptibility loci for primary central nervous system lymphoma at 6p25.3 and 3p22.1: a LOC network study.	Primary central nervous system lymphoma	475 European ancestry cases, 1,134 European ancestry controls	NA	6p21.32	HLA-DRA	rs2395192-C	0.59	2E-7		1.51	[1.29-1.76]	Illumina [> 10000000] (imputed)	N
613	chr6_dbb_hap3	3725988	3725989	rs79019614	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	118,886 East Asian ancestry individuals	NA	6p21.32		rs79019614-A	0.098187	1E-11		0.0513157	[0.036-0.066] unit increase	Illumina [13474352] (imputed)	N
613	chr6_dbb_hap3	3726851	3726852	rs185717927	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.32	intergenic	rs185717927-C		7E-13		1.23	[1.16-1.31]	Affymetrix, Illumina [NR]	N
613	chr6_dbb_hap3	3727141	3727142	rs573988888	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	6p21.32		rs573988888-G	0.00312299999999999	4E-9		0.13276471	[0.088-0.177] unit increase	Affymetrix [93095623] (imputed)	N
613	chr6_dbb_hap3	3727141	3727142	rs573988888	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	6p21.32		rs573988888-G	0.00312500000000004	4E-14		0.16856486	[0.12-0.21] unit decrease	Affymetrix [93095623] (imputed)	N
613	chr6_dbb_hap3	3728061	3728062	rs112463084	34532061	Hodel F	2021-06-11	Virus Evol	Human genomics of the humoral immune response against polyomaviruses.	JC polyomavirus VP1 antibody levels	8,567 European ancestry individuals	NA	6p21.32		rs112463084-?	NR	2E-20				Affymetrix [NR] (imputed)	N
613	chr6_dbb_hap3	3728816	3728817	rs111639056	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.32	HLA-DQA1, HLA-DRA, HLA-DRB1, HLA-DRB5, HLA-DRB6	rs111639056-?		2E-15		1.1494253	[1.11-1.19]	Affymetrix, Illumina [NR]	N
613	chr6_dbb_hap3	3728843	3728844	rs3819692	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	6p21.32		rs3819692-A	0.588296	4E-9		0.0276799	[0.018-0.037] unit increase	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3838609	3838610	rs28366255	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs28366255-T	0.284	1E-14	(Complement C4, C4A.C4B.4481.34.2)	0.24	[0.18-0.3] unit increase	Affymetrix [10572788] (imputed)	N
614	chr6_dbb_hap3	3838800	3838801	rs34434863	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	6p21.32		rs34434863-G	NR	2E-30		0.0254	[0.021-0.03] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
614	chr6_dbb_hap3	3838879	3838880	rs28366266	29903748	Debiec H	2018-06-14	J Am Soc Nephrol	Transethnic, Genome-Wide Analysis Reveals Immune-Related Risk Alleles and Phenotypic Correlates in Pediatric Steroid-Sensitive Nephrotic Syndrome.	Childhood steroid-sensitive nephrotic syndrome	244 European ancestry cases, 2,552 European ancestry controls, 56 African cases, 454 African controls, 85 Maghrebian cases, 261 Maghrebian controls	NA	6p21.32	HLA-DRB1	rs28366266-C	0.17	4E-20		3.03	[2.40-3.85]	Illumina [at least 7529344] (imputed)	N
614	chr6_dbb_hap3	3838879	3838880	rs28366266	29903748	Debiec H	2018-06-14	J Am Soc Nephrol	Transethnic, Genome-Wide Analysis Reveals Immune-Related Risk Alleles and Phenotypic Correlates in Pediatric Steroid-Sensitive Nephrotic Syndrome.	Childhood steroid-sensitive nephrotic syndrome	132 European ancestry cases, 2,000 European ancestry controls	NA	6p21.32	HLA-DRB1	rs28366266-?	0.17	6E-6		2.25	[1.59-3.2]	Illumina [at least 7529344] (imputed)	N
614	chr6_dbb_hap3	3838890	3838891	rs9270539	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	Systemic lupus erythematosus	1,639 East Asian ancestry cases, 2,410 East Asian ancestry controls	NA			rs9270539-C	NR	4E-36		0.5741	[0.48-0.66] unit decrease	Illumina [NR] (imputed)	N
614	chr6_dbb_hap3	3839411	3839412	rs28366282	33766948	Zhu Z	2021-03-25	Eur Respir J	A large-scale genome-wide association analysis of lung function in the Chinese population identifies novel loci and highlights shared genetic etiology with obesity.	Lung function (FVC)	100,285 Chinese ancestry individuals	NA	6p21.32		rs28366282-C	0.76	3E-11		0.035	[0.025-0.045] L increase	Affymetrix [NR] (imputed)	N
614	chr6_dbb_hap3	3839604	3839605	rs34415150	33510174	Jones G	2021-01-28	Nat Commun	Genome-wide meta-analysis of muscle weakness identifies 15 susceptibility loci in older men and women.	Low hand grip strength (60 years and older) (FNIH)	20,335 European ancestry cases, 236,188 European ancestry controls	NA	6p21.32	HLA-DRB1	rs34415150-G	0.18	6E-16		0.1158	unit increase	Affymetrix, Illumina [9465622] (imputed)	N
614	chr6_dbb_hap3	3839604	3839605	rs34415150	33510174	Jones G	2021-01-28	Nat Commun	Genome-wide meta-analysis of muscle weakness identifies 15 susceptibility loci in older men and women.	Low hand grip strength (60 years and older) (EWGSOP)	48,596 European ancestry cases, 207,927 European ancestry controls	NA	6p21.32	HLA-DRB1	rs34415150-A	0.822	4E-17		0.0833	[0.064-0.103] unit decrease	Affymetrix, Illumina [9457422] (imputed)	N
614	chr6_dbb_hap3	3839604	3839605	rs34415150	33510174	Jones G	2021-01-28	Nat Commun	Genome-wide meta-analysis of muscle weakness identifies 15 susceptibility loci in older men and women.	Low hand grip strength (60 years and older) (EWGSOP)	34,589 European ancestry female cases, 100,879 European ancestry female controls	NA	6p21.32	HLA-DRB1	rs34415150-G	0.18	1E-16		0.1001	unit increase	Affymetrix, Illumina [9449805] (imputed)	N
614	chr6_dbb_hap3	3839604	3839605	rs34415150	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	6p21.32	NR	rs34415150-A	0.815874	2E-52		0.0399601	[0.035-0.045] unit decrease	NR [NR]	N
614	chr6_dbb_hap3	3839757	3839758	rs35118762	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (immunosuppressants)	3,954 European ancestry cases, 268,648 European ancestry controls, 3,483 East Asian ancestry cases, 175,243 East Asian ancestry controls	NA	6p21.32		rs35118762-T	NR	1E-120		0.4878	[0.45-0.53] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
614	chr6_dbb_hap3	3839878	3839879	rs7768875	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on IgD+ CD38+ B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs7768875-T	0.47719	3E-8		0.1706	[0.11-0.23] unit decrease	Illumina [18238311] (imputed)	N
614	chr6_dbb_hap3	3839897	3839898	rs2760975	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	6p21.32	HLA-DRB1	rs2760975-A	0.168	5E-12		0.003	[0.0022-0.0038] unit decrease	Affymetrix [15275733] (imputed)	N
614	chr6_dbb_hap3	3839897	3839898	rs2760975	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	223,215 British ancestry individuals	111,610 British ancestry individuals	6p21.32	HLA-DRB1	rs2760975-A	0.17	1E-9		0.003	[0.002-0.004] unit decrease	Affymetrix [15275733] (imputed)	N
614	chr6_dbb_hap3	3839955	3839956	rs28366297	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	6p21.32		rs28366297-C	0.30822	1E-6		0.035757	[0.021-0.05] unit increase	Affymetrix [15580782] (imputed)	N
614	chr6_dbb_hap3	3839996	3839997	rs28366299	33143745	Andlauer TFM	2020-11-04	BMC Med	Treatment- and population-specific genetic risk factors for anti-drug antibodies against interferon-beta: a GWAS.	Neutralising antibody response to interferon beta therapy in multiple sclerosis (presence of antibodies; IFN?-1b subcutaneous)	up to 2,000 German and Swedish ancestry individuals	up to 757 German and Swedish ancestry individuals	6p21.32		rs28366299-A	0.19	7E-19		1.27	[1.0-1.54] unit increase	Illumina [8550834] (imputed)	N
614	chr6_dbb_hap3	3840009	3840010	rs28366301	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	High density lipoprotein cholesterol levels	70,657 Japanese ancestry individuals	NA	6p21.32	HLA-DRB1, HLA-DQA1	rs28366301-?	NR	8E-11		0.03687	[0.026-0.048] unit increase novel	Illumina [6108953] (imputed)	N
614	chr6_dbb_hap3	3840193	3840194	rs9270576	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	78,744 East Asian ancestry individuals	NA	6p21.32	NR	rs9270576-C	0.620915	3E-28		0.071855	[0.059-0.085] SD units increase	Affymetrix, Illumina [16289093] (imputed)	N
614	chr6_dbb_hap3	3840408	3840409	rs35525122	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on myeloid Dendritic Cell	2,872 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs35525122-A	0.10869	1E-65		0.8525	[0.76-0.95] unit increase	Illumina [17926605] (imputed)	N
614	chr6_dbb_hap3	3840425	3840426	rs9270585	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on CD14+ monocyte	3,629 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9270585-T	0.5757300000000001	6E-92		0.5871	[0.53-0.64] unit decrease	Illumina [18218967] (imputed)	N
614	chr6_dbb_hap3	3840425	3840426	rs9270585	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on CD14+ CD16- monocyte	3,629 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9270585-T	0.5757300000000001	3E-98		0.6054	[0.55-0.66] unit decrease	Illumina [18218967] (imputed)	N
614	chr6_dbb_hap3	3840452	3840453	rs9270588	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on monocyte	3,629 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9270588-T	0.5771	3E-78		0.5388	[0.48-0.59] unit decrease	Illumina [18218967] (imputed)	N
614	chr6_dbb_hap3	3840452	3840453	rs9270588	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on CD33+ HLA DR+ CD14dim	1,578 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9270588-T	0.43503	8E-26		0.4302	[0.35-0.51] unit decrease	Illumina [16958370] (imputed)	N
614	chr6_dbb_hap3	3840452	3840453	rs9270588	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on CD33+ HLA DR+ CD14-	1,579 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9270588-T	0.43507	2E-49		0.5992	[0.52-0.68] unit decrease	Illumina [16961968] (imputed)	N
614	chr6_dbb_hap3	3840495	3840496	rs35139284	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Rheumatoid arthritis	8,255 European ancestry cases, 409,001 European ancestry controls, 5,348 East Asian ancestry cases, 173,268 East Asian ancestry controls	NA	6p21.32		rs35139284-T	NR	4E-287		0.5387	[0.51-0.57] unit increase	Affymetrix, Illumina [25835038] (imputed)	N
614	chr6_dbb_hap3	3840495	3840496	rs35139284	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DRB1	rs35139284-T	NR	4E-17		0.0253723	[0.019-0.031] unit increase	Affymetrix [319769] (imputed)	N
614	chr6_dbb_hap3	3840495	3840496	rs35139284	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DRB1	rs35139284-T	NR	8E-11		0.0218487	[0.015-0.028] unit increase	Affymetrix [323858] (imputed)	N
614	chr6_dbb_hap3	3840495	3840496	rs35139284	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DRB1	rs35139284-T	NR	1E-16		0.0250062	[0.019-0.031] unit increase	Affymetrix [319769] (imputed)	N
614	chr6_dbb_hap3	3840495	3840496	rs35139284	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	HLA-DRB1	rs35139284-T	NR	4E-10		0.0210099	[0.014-0.028] unit increase	Affymetrix [127266] (imputed)	N
614	chr6_dbb_hap3	3840495	3840496	rs35139284	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	HLA-DRB1	rs35139284-T	NR	1E-8		0.0174619	[0.011-0.023] unit increase	Affymetrix [321114] (imputed)	N
614	chr6_dbb_hap3	3840495	3840496	rs35139284	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DRB1	rs35139284-T	NR	5E-16		0.0247016	[0.019-0.031] unit increase	Affymetrix [321169] (imputed)	N
614	chr6_dbb_hap3	3840495	3840496	rs35139284	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	6p21.32	HLA-DRB1, HLA-DQA1	rs35139284-T	0.32	7E-23		9.85	z-score increase	Affymetrix [4311822] (imputed)	N
614	chr6_dbb_hap3	3840495	3840496	rs35139284	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on B cell	3,660 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs35139284-T	0.40599	4E-10		0.183	[0.13-0.24] unit increase	Illumina [18238700] (imputed)	N
614	chr6_dbb_hap3	3840500	3840501	rs201291779	34108613	Ivarsdottir EV	2021-06-09	Commun Biol	The genetic architecture of age-related hearing impairment revealed by genome-wide association analysis.	Age-related hearing impairment	121,934 European ancestry cases, 591,699 European ancestry controls	NA	6p21.32	HLA-DRB1	rs201291779-T	1.58	5E-14	(additive)	1.15	[NR]	Affymetrix, Illumina [46900000] (imputed)	N
614	chr6_dbb_hap3	3840549	3840550	rs9270591	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Monocytic Myeloid-Derived Suppressor Cells Absolute Count	1,855 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9270591-T	0.43396	5E-26		0.4161	[0.34-0.49] unit increase	Illumina [17197940] (imputed)	N
614	chr6_dbb_hap3	3840549	3840550	rs9270591	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR++ monocyte %leukocyte	3,595 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9270591-T	0.5705100000000001	7E-18		0.2715	[0.21-0.33] unit decrease	Illumina [18380843] (imputed)	N
614	chr6_dbb_hap3	3840549	3840550	rs9270591	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on Hematopoietic Stem Cell	1,634 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9270591-T	0.43702	3E-48		0.5658	[0.49-0.64] unit decrease	Illumina [16999215] (imputed)	N
614	chr6_dbb_hap3	3840781	3840782	rs9270599	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on B cell	3,060 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9270599-A	0.62618	3E-65		0.5573	[0.49-0.62] unit increase	Illumina [18012789] (imputed)	N
614	chr6_dbb_hap3	3841385	3841386	rs28366348	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	6p21.32		rs28366348-A	0.728713	1E-9		0.0290399	[0.02-0.038] unit increase	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3841455	3841456	rs35372932	35023831	Chong M	2022-01-13	Elife	GWAS and ExWAS of blood Mitochondrial DNA copy number identifies 71 loci and highlights a potential causal role in dementia.	Mitochondrial DNA copy number	395,718 British, Irish, Other White, South Asian, African ancestry individuals	NA	6p21.32	NR	rs35372932-T	0.170327	4E-9		0.0251	[0.017-0.034] unit decrease	Affymetrix [23037915] (imputed)	N
614	chr6_dbb_hap3	3841608	3841609	rs28366357	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DRB1	rs28366357-T	NR	4E-11		0.0208439	[0.015-0.027] unit decrease	Affymetrix [323123] (imputed)	N
614	chr6_dbb_hap3	3841671	3841672	rs2760980	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on CD33- HLA DR+	1,635 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs2760980-A	0.10748	2E-60		1.049	[0.93-1.17] unit increase	Illumina [16999305] (imputed)	N
614	chr6_dbb_hap3	3841683	3841684	rs28366362	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.32		rs28366362-C	0.409768	4E-26		0.029002981	[0.024-0.034] unit increase	Affymetrix [93095623] (imputed)	N
614	chr6_dbb_hap3	3841936	3841937	rs2760981	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.32	BTNL2, C6orf10, HCG23, HLA-DQA1, HLA-DRA, HLA-DRB1, HLA-DRB5, HLA-DRB6	rs2760981-?		4E-11		1.0752687	[1.05-1.1]	Affymetrix, Illumina [NR]	N
614	chr6_dbb_hap3	3842026	3842027	rs9270632	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.32		rs9270632-G	0.676	3E-48				Affymetrix [10369434] (imputed)	N
614	chr6_dbb_hap3	3842143	3842144	rs9270637	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs9270637-G	0.293	9E-20	(Complement C4, C4A.C4B.4481.34.2)	0.24	[0.18-0.3] unit decrease	Affymetrix [10572788] (imputed)	N
614	chr6_dbb_hap3	3842145	3842146	rs28383169	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	6p21.32		rs28383169-G	0.44037	4E-19		0.0246375	[0.019-0.03] unit decrease	Illumina [13479924] (imputed)	N
614	chr6_dbb_hap3	3842258	3842259	rs117726495	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs affecting bone structure and mineralization)	7,870 European ancestry cases, 207,798 European ancestry controls, 6,143 East Asian ancestry cases, 172,583 East Asian ancestry controls	NA	6p21.32		rs117726495-A	NR	8E-16		0.2102	[0.16-0.26] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
614	chr6_dbb_hap3	3842297	3842298	rs9270647	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DRB1	rs9270647-C	NR	9E-12		0.0207928	[0.015-0.027] unit decrease	Affymetrix [319769] (imputed)	N
614	chr6_dbb_hap3	3842297	3842298	rs9270647	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DRB1	rs9270647-C	NR	2E-12		0.0216513	[0.016-0.028] unit decrease	Affymetrix [321169] (imputed)	N
614	chr6_dbb_hap3	3842300	3842301	rs9270649	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DRB1	rs9270649-A	NR	2E-11		0.0205577	[0.015-0.027] unit decrease	Affymetrix [319769] (imputed)	N
614	chr6_dbb_hap3	3842588	3842589	rs2647078	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs2647078-C	0.806	9E-21		0.803	[0.76-0.85]	Illumina [11270530] (imputed)	N
614	chr6_dbb_hap3	3843065	3843066	rs4329147	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	6p21.32	HLA-DRB1	rs4329147-T	0.83	1E-11		1.11	[1.09-1.13]	Illumina [at least 560000] (imputed)	N
614	chr6_dbb_hap3	3843065	3843066	rs4329147	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	6p21.32	HLA-DRB5, HLA-DQA1	rs4329147-?	NR	1E-11		1.111	[1.078-1.146]	Illumina [13754664] (imputed)	N
614	chr6_dbb_hap3	3843746	3843747	rs687308	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (immunosuppressants)	3,954 European ancestry cases, 268,648 European ancestry controls	NA	6p21.32	HLA-DRB1	rs687308-T	0.191895	2E-84		0.5610923	[0.5-0.62] unit increase	Affymetrix [7288503] (imputed)	N
614	chr6_dbb_hap3	3844626	3844627	rs7450706	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	6p21.32		rs7450706-T	0.046397	4E-13		0.040589344	[0.03-0.052] unit decrease	Affymetrix [93095623] (imputed)	N
614	chr6_dbb_hap3	3844779	3844780	rs9270747	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)(bidirectional)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs9270747-A	NR	2E-32				Affymetrix [7846216] (imputed)	N
614	chr6_dbb_hap3	3844833	3844834	rs9270750	26956414	Berndt SI	2016-03-09	Nat Commun	Meta-analysis of genome-wide association studies discovers multiple loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	3,100 European ancestry cases, 7,667 European ancestry controls	1,958 cases,  5,530 controls	6p21.32	HLA-DQB1, HLA-DRB1, HLA-DRB5	rs9270750-A	0.543	6E-16		1.32	[1.23-1.41]	Affymetrix, Illumina [~ 8500000] (imputed)	N
614	chr6_dbb_hap3	3845531	3845532	rs9270779	29769521	Ramirez J	2018-05-16	Nat Commun	Thirty loci identified for heart rate response to exercise and recovery implicate autonomic nervous system.	Heart rate response to exercise	up to 35,455 European ancestry females, up to 31,802 European ancestry males	NA	6p21.32	HLA-DRB5, HLA-DRB1	rs9270779-T	0.323	1E-8	(females)	0.538	[0.35-0.72] bpm decrease	Affymetrix [~ 7800000] (imputed)	N
614	chr6_dbb_hap3	3845777	3845778	rs9270798	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DRB1	rs9270798-A	NR	2E-8		0.0191935	[0.013-0.026] unit decrease	Affymetrix [319769] (imputed)	N
614	chr6_dbb_hap3	3845928	3845929	rs140177540	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p21.32	HLA-DRB1	rs140177540-?	0.47	5E-15		1.06	[1.05-1.07]	Illumina [at least 560000] (imputed)	N
614	chr6_dbb_hap3	3846166	3846167	rs477515	25817017	Carmona FD	2015-03-26	Am J Hum Genet	A large-scale genetic analysis reveals a strong contribution of the HLA class II region to giant cell arteritis susceptibility.	Giant cell arteritis	1,651 European ancestry cases, 15,306 European ancestry controls	NA	6p21.32	HLA-DRB1, HLA-DQA1	rs477515-?		4E-40		1.73	[1.59-1.87]	Illumina [95416]	N
614	chr6_dbb_hap3	3846166	3846167	rs477515	24282030	Pan L	2013-11-28	Hum Mol Genet	A genome-wide association study identifies polymorphisms in the HLA-DR region associated with non-response to hepatitis B vaccination in Chinese Han populations.	Hepatitis B vaccine response	108 Han Chinese ancestry high-responder cases, 77 Han Chinese ancestry non-responder controls	1,336 Han Chinese ancestry high-responder cases, 420 Han Chinese ancestry non-responder controls	6p21.32	HLA-DRA, BTNL2, HLA-DRB1, C6orf10	rs477515-T	0.442	3E-19		2.05	[1.75-2.41]	Illumina [588026]	N
614	chr6_dbb_hap3	3846166	3846167	rs477515	23326239	Rubicz R	2013-01-10	PLoS Genet	A genome-wide integrative genomic study localizes genetic factors influencing antibodies against Epstein-Barr virus nuclear antigen 1 (EBNA-1).	Epstein-Barr virus immune response (EBNA-1)	1,367 Mexican American indivduals	589 Mexican American indivduals	6p21.32	HLA-DRB1	rs477515-T	0.32	3E-13	(Quantitative)	0.28	[NR] unit decrease	Illumina [944565]	N
614	chr6_dbb_hap3	3846166	3846167	rs477515	18758464	Kugathasan S	2008-08-31	Nat Genet	Loci on 20q13 and 21q22 are associated with pediatric-onset inflammatory bowel disease.	Inflammatory bowel disease	1,011 European ancestry cases, 4,250 European ancestry controls	1,922 European ancestry cases, 14,124 European ancestry controls	6p21.32	HLA-DQA1	rs477515-?	0.69	1E-8		1.38	[1.23-1.54]	Illumina [NR]	N
614	chr6_dbb_hap3	3846405	3846406	rs116763083	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	HLA-DRB1	rs116763083-A	0.026	4E-16	(C-C motif chemokine 19, CCL19.4922.13.1)	0.63	[0.47-0.79] unit increase	Affymetrix [10572788] (imputed)	N
614	chr6_dbb_hap3	3846780	3846781	rs34039593	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on plasmacytoid Dendritic Cell	2,872 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs34039593-G	0.11165	6E-146		1.217	[1.13-1.3] unit increase	Illumina [17926607] (imputed)	N
614	chr6_dbb_hap3	3846780	3846781	rs34039593	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on Dendritic Cell	2,871 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs34039593-G	0.11169	4E-110		1.075	[0.98-1.17] unit increase	Illumina [17926566] (imputed)	N
614	chr6_dbb_hap3	3846780	3846781	rs34039593	29534301	Nishida N	2018-03-13	Hepatology	Key HLA-DRB1-DQB1 haplotypes and role of the BTNL2 gene for response to a hepatitis B vaccine.	Response to hepatitis B vaccine	107 Japanese ancestry low responder individuals, 351 Japanese ancestry intermediate responder individuals, 735 Japanese ancestry high responder individuals	NA	6p21.32	HLA-DQA1	rs34039593-?		6E-12		0.2	unit increase	Affymetrix [427664]	N
614	chr6_dbb_hap3	3846869	3846870	rs2516049	31596875	Traylor M	2019-10-09	PLoS One	Genetic associations with radiological damage in rheumatoid arthritis: Meta-analysis of seven genome-wide association studies of 2,775 cases.	Joint damage in rheumatoid arthritis	2,527 European ancestry individuals	NA	6p21.32	intergenic	rs2516049-?	NR	3E-6	(adjusted for rheumatoid factor)			Affymetrix, Illumina [2723488] (imputed)	N
614	chr6_dbb_hap3	3846869	3846870	rs2516049	31375628	Tengvall K	2019-08-02	Proc Natl Acad Sci U S A	Molecular mimicry between Anoctamin 2 and Epstein-Barr virus nuclear antigen 1 associates with multiple sclerosis risk.	Anti-anoctamin 2 antibody levels	11,936 European ancestry individuals	NA	6p21.32	NR	rs2516049-G	NR	7E-15		0.092	[0.065-0.119] unit decrease	Illumina [615763]	N
614	chr6_dbb_hap3	3846869	3846870	rs2516049	26819262	Zhou Y	2016-01-27	Mult Scler	Genetic loci for Epstein-Barr virus nuclear antigen-1 are associated with risk of multiple sclerosis.	Epstein Barr virus nuclear antigen 1 IgG levels	1,243 parents and up to 2,356 children from 992 families, 1,956 Mexican American individuals		6p21.32	NR	rs2516049-T		6E-14	(Mexican American)	0.204	unit increase	Illumina [up to 2428201] (imputed)	N
614	chr6_dbb_hap3	3846869	3846870	rs2516049	26819262	Zhou Y	2016-01-27	Mult Scler	Genetic loci for Epstein-Barr virus nuclear antigen-1 are associated with risk of multiple sclerosis.	Epstein Barr virus nuclear antigen 1 IgG levels	1,243 parents and up to 2,356 children from 992 families, 1,956 Mexican American individuals		6p21.32	NR	rs2516049-T		4E-9	(non-Mexican American)	0.204	unit increase	Illumina [up to 2428201] (imputed)	N
614	chr6_dbb_hap3	3846869	3846870	rs2516049	26819262	Zhou Y	2016-01-27	Mult Scler	Genetic loci for Epstein-Barr virus nuclear antigen-1 are associated with risk of multiple sclerosis.	Epstein Barr virus nuclear antigen 1 IgG levels	1,243 parents and up to 2,356 children from 992 families, 1,956 Mexican American individuals		6p21.32	NR	rs2516049-T		3E-20		0.204	unit increase	Illumina [up to 2428201] (imputed)	N
614	chr6_dbb_hap3	3846870	3846871	rs2454138	29521573	Buck D	2018-03-01	Mult Scler	Effect of HLA-DRB1 alleles and genetic variants on the development of neutralizing antibodies to interferon beta in the BEYOND and BENEFIT trials.	Neutralising antibody response to interferon beta therapy in multiple sclerosis (mean antibody levels)	926 European ancestry individuals, 7 Hispanic individuals, 1 Asian ancestry individuals, 1 African ancestry individual, 4 other unknown ancestry individuals, 2 individuals	NA	6p21.32	intergenic	rs2454138-A	0.22	5E-19		0.41	[0.31-0.51] unit increase	Affymetrix [8671751] (imputed)	N
614	chr6_dbb_hap3	3846870	3846871	rs2454138	29521573	Buck D	2018-03-01	Mult Scler	Effect of HLA-DRB1 alleles and genetic variants on the development of neutralizing antibodies to interferon beta in the BEYOND and BENEFIT trials.	Neutralising antibody response to interferon beta therapy in multiple sclerosis (maximum antibody levels)	926 European ancestry individuals, 7 Hispanic individuals, 1 Asian ancestry individuals, 1 African ancestry individual, 4 other unknown ancestry individuals, 2 individuals	NA	6p21.32	intergenic	rs2454138-A	0.22	1E-18		0.41	unit increase	Affymetrix [8671751] (imputed)	N
614	chr6_dbb_hap3	3846870	3846871	rs2454138	29521573	Buck D	2018-03-01	Mult Scler	Effect of HLA-DRB1 alleles and genetic variants on the development of neutralizing antibodies to interferon beta in the BEYOND and BENEFIT trials.	Neutralising antibody response to interferon beta therapy in multiple sclerosis (area under the curve for the first two years)	926 European ancestry individuals, 7 Hispanic individuals, 1 Asian ancestry individuals, 1 African ancestry individual, 4 other unknown ancestry individuals, 2 individuals	NA	6p21.32	intergenic	rs2454138-A	0.22	8E-19		0.41	[0.31-0.51] unit increase	Affymetrix [8671751] (imputed)	N
614	chr6_dbb_hap3	3846886	3846887	rs2647062	32201043	Smeland OB	2020-02-08	Biol Psychiatry	Genome-wide Association Analysis of Parkinson's Disease and Schizophrenia Reveals Shared Genetic Architecture and Identifies Novel Risk Loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	NA	6p21.32	HLA-DRB1	rs2647062-A		6E-12		0.143	[0.1-0.18] unit increase	Illumina [NR]	N
614	chr6_dbb_hap3	3846886	3846887	rs2647062	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	148,164 European ancestry individuals	NA	6p21.32	HLA-DRB1	rs2647062-A	0.84	1E-11	(BMI-adjusted)	0.048	[0.034-0.062] unit decrease	Affymetrix, Illumina, Perlegen [10019203] (imputed)	N
614	chr6_dbb_hap3	3847039	3847040	rs558721	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD64 on CD14- CD16-	3,622 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs558721-T	0.07623	2E-8		0.3331	[0.22-0.45] unit increase	Illumina [18215199] (imputed)	N
614	chr6_dbb_hap3	3847332	3847333	rs556025	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	6p21.32		rs556025-T	0.35263	3E-8		0.039419	[0.025-0.053] unit increase	Affymetrix [15580782] (imputed)	N
614	chr6_dbb_hap3	3847433	3847439	rs749637599	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hearing loss, difficulty in hearing	14,654 European ancestry cases, 474,839 European ancestry controls, 3,400 East Asian ancestry cases, 175,326 East Asian ancestry controls	NA	6p21.32		rs749637599-G	NR	3E-12		0.174	[0.13-0.22] unit increase	Affymetrix, Illumina [25845022] (imputed)	N
614	chr6_dbb_hap3	3847773	3847774	rs9270878	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	HLA-DRB1	rs9270878-A	NR	9E-10		0.0181825	[0.012-0.024] unit decrease	Affymetrix [321114] (imputed)	N
614	chr6_dbb_hap3	3848003	3848004	rs9270891	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs9270891-G	0.159	6E-35	(Ubiquitin carboxyl-terminal hydrolase 25, USP25.9215.117.3)	0.41	[0.35-0.47] unit increase	Affymetrix [10572788] (imputed)	N
614	chr6_dbb_hap3	3848135	3848136	rs17425622	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PLXDC2	5,360 Icelandic ancestry individuals	NA	6p21.32		rs17425622-C	0.1783	1E-21		0.224277	[0.18-0.27] unit decrease	Illumina [7506463] (imputed)	N
614	chr6_dbb_hap3	3848135	3848136	rs17425622	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Parkinson's disease	9,619 European ancestry cases, 324,522 European ancestry controls	NA	6p21.32	HLA-DQA1, HLA-DRB5	rs17425622-?	NR	4E-17		1.235	[1.174-1.298]	Illumina [12438219] (imputed)	N
614	chr6_dbb_hap3	3848278	3848279	rs34102154	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Non-Hodgkin's lymphoma	2,400 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs34102154-G	NR	1E-14		1.431	NR	Affymetrix [7846216] (imputed)	N
614	chr6_dbb_hap3	3848374	3848375	rs9270911	33558538	Gebresilase T	2021-02-08	Sci Rep	Replication of HLA class II locus association with susceptibility to podoconiosis in three Ethiopian ethnic groups.	Podoconiosis	1,137 Ethiopian ancestry cases, 1,152 Ethiopian ancestry controls	NA	6p21.32	intergenic	rs9270911-T	0.44	2E-12				Illumina [2201695]	N
614	chr6_dbb_hap3	3848374	3848375	rs9270911	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs9270911-?	NR	1E-27				Affymetrix [~ 8270000] (imputed)	N
614	chr6_dbb_hap3	3849345	3849346	rs601006	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	HLA-DRB1	rs601006-A	NR	9E-10		0.0179058	[0.012-0.024] unit increase	Affymetrix [321114] (imputed)	N
614	chr6_dbb_hap3	3849579	3849580	rs601945	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	6p21.32	MHC	rs601945-G	0.1775	5E-8		1.06	[1.04-1.08]	Affymetrix, Illumina [~ 27000000] (imputed)	N
614	chr6_dbb_hap3	3849635	3849636	rs9270965	24204295	Han F	2013-10-31	PLoS Genet	Genome wide analysis of narcolepsy in China implicates novel immune loci and reveals changes in association prior to versus after the 2009 H1N1 influenza pandemic.	Narcolepsy (onset before 2009 H1N1 influenza pandemic)	up to 893 Chinese ancestry cases with onset before the 2009 H1N1 influenza pandemic, up to 373 Chinese ancestry cases with onset after the 2009 H1N1 influenza pandemic	NA	6p21.32	NR	rs9270965-?	NR	5E-12		1.72	[NR]	Affymetrix [603382]	N
614	chr6_dbb_hap3	3849738	3849739	rs9270970	32771030	Tangtanatakul P	2020-08-08	Arthritis Res Ther	Meta-analysis of genome-wide association study identifies FBN2 as a novel locus associated with systemic lupus erythematosus in Thai population.	Systemic lupus erythematosus	487 Thai cases, 1,606 Thai controls	405 Thai cases, 1,590 Thai controls	6p21.32	HLA-DRB1, HLA-DQA1	rs9270970-G	0.42	4E-26		1.8293	[NR]	Illumina [421909] (imputed)	N
614	chr6_dbb_hap3	3849792	3849793	rs144123929	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in IDL	115,082 European ancestry individuals	NA	6p21.32		rs144123929-C	0.971917	1E-8		0.0862226	[0.057-0.116] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3849793	3849794	rs602875	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DRB1	rs602875-G	NR	1E-8		0.0188152	[0.012-0.025] unit decrease	Affymetrix [319769] (imputed)	N
614	chr6_dbb_hap3	3849793	3849794	rs602875	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DRB1	rs602875-G	NR	3E-8		0.0183289	[0.012-0.025] unit decrease	Affymetrix [319769] (imputed)	N
614	chr6_dbb_hap3	3849793	3849794	rs602875	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DRB1	rs602875-G	NR	4E-9		0.0196908	[0.013-0.026] unit decrease	Affymetrix [321169] (imputed)	N
614	chr6_dbb_hap3	3849793	3849794	rs602875	20018961	Zhang FR	2009-12-16	N Engl J Med	Genomewide association study of leprosy.	Leprosy	706 Han Chinese ancestry cases, 1,225 Han Chinese ancestry controls	3,254 Chinese ancestry cases, 5,955 Chinese ancestry controls	6p21.32	HLA-DR-DQ	rs602875-A	0.68	5E-27		1.61	[1.39-1.61]	Illumina [491883]	N
614	chr6_dbb_hap3	3850078	3850079	rs2647071	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DRB1	rs2647071-T	NR	2E-8		0.0181138	[0.012-0.024] unit increase	Affymetrix [321169] (imputed)	N
614	chr6_dbb_hap3	3850160	3850161	rs9270984	23273568	Yang W	2012-12-27	Am J Hum Genet	Meta-analysis followed by replication identifies loci in or near CDKN1B, TET3, CD80, DRAM1, and ARID5B as associated with systemic lupus erythematosus in Asians.	Systemic lupus erythematosus	1,656 Han Chinese ancestry cases, 3,394 Han Chinese ancestry controls	3,256 Han Chinese ancestry cases, 5,667 Han Chinese ancestry controls, 453 Thai ancestry cases, 963 Thai ancestry controls	6p21.32	HLA-DRB1	rs9270984-T	0.18	5E-24		1.73		Illumina [2100739] (imputed)	N
614	chr6_dbb_hap3	3850229	3850230	rs9270986	25643325	Renton AE	2015-04-01	JAMA Neurol	A genome-wide association study of myasthenia gravis.	Myasthenia gravis	972 European ancestry cases, 1,977 European ancestry controls	423 European ancestry cases, 467 European ancestry controls	6p21.32	HLA-DRB1, HLA-DQA1	rs9270986-A	0.15	6E-8		1.43	[NR]	Illumina [8114394] (imputed)	N
614	chr6_dbb_hap3	3850340	3850341	rs615672	33736632	Zeng Z	2021-03-18	BMC Med Genomics	Genome-wide association study identifies new loci associated with risk of HBV infection and disease progression.	Persistent hepatitis B virus infection	587 Chinese ancestry persistent cases, 275 Chinese ancestry clearance controls	NA	6p21.32	HLA-DRB1	rs615672-G	0.5276	9E-7		0.5697	NR	Affymetrix [607153]	N
614	chr6_dbb_hap3	3850340	3850341	rs615672	33736632	Zeng Z	2021-03-18	BMC Med Genomics	Genome-wide association study identifies new loci associated with risk of HBV infection and disease progression.	Hepatitis B	460 Chinese ancestry cases, 169 Chinese ancestry controls	NA	6p21.32	HLA-DRB1	rs615672-?	NR	1E-6				Affymetrix [607153]	N
614	chr6_dbb_hap3	3850340	3850341	rs615672	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.32	HLA-DRB1	rs615672-G	0.6531	2E-8	(EA)	0.0253	[0.016-0.034] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
614	chr6_dbb_hap3	3850340	3850341	rs615672	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.32	HLA-DRB1	rs615672-G	0.6427	1E-8		0.0242	[0.016-0.032] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
614	chr6_dbb_hap3	3850340	3850341	rs615672	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6p21.32	HLA, DRB1	rs615672-G	0.6531	1E-6	(EA)	0.0244	[0.014-0.034] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
614	chr6_dbb_hap3	3850340	3850341	rs615672	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6p21.32	HLA, DRB1	rs615672-G	0.6427	1E-6		0.0235	[0.014-0.033] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
614	chr6_dbb_hap3	3850340	3850341	rs615672	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.32	HLA-DRB1	rs615672-?	0.6531	2E-7	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
614	chr6_dbb_hap3	3850340	3850341	rs615672	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.32	HLA-DRB1	rs615672-?	0.6427	1E-7				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
614	chr6_dbb_hap3	3850340	3850341	rs615672	17554300	Wellcome Trust Case Control Consortium	2007-06-07	Nature	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Rheumatoid arthritis	1,860 European ancestry cases, 2,938 European ancestry controls	NA	6p21.32	HLA-DRB1	rs615672-?	NR	8E-27				Affymetrix [469557]	N
614	chr6_dbb_hap3	3850527	3850528	rs2760995	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	6p21.32	NR	rs2760995-?	NR	6E-11				Affymetrix [~ 8270000] (imputed)	N
614	chr6_dbb_hap3	3850527	3850528	rs2760995	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals, 6,795 African American individuals, 6,324 East Asian ancestry individuals, 2,335 South Asian ancestry individuals, 1,442 Hispanic individuals	NA	6p21.32	HLA-DRB	rs2760995-A	NR	4E-8		0.014	[0.0091-0.0189] unit decrease	Affymetrix, Illumina [8034757] (imputed)	N
614	chr6_dbb_hap3	3850527	3850528	rs2760995	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Microalbuminuria	51,861 European, African American, East Asian, South Asian or Hispanic ancestry cases, 297,093 European, African American, East Asian, South Asian or Hispanic ancestry controls	NA	6p21.32	HLA-DRB	rs2760995-G	NR	3E-7		1.0445645	[1.03-1.06]	Affymetrix, Illumina [8326000] (imputed)	N
614	chr6_dbb_hap3	3850529	3850530	rs2647074	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (anti-inflammatory and antirheumatic products, non-steroids)	74,150 European ancestry cases, 90,370 European ancestry controls, 29,694 East Asian ancestry cases, 149,032 East Asian ancestry controls	NA	6p21.32		rs2647074-T	NR	3E-12		0.0772	[0.056-0.099] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
614	chr6_dbb_hap3	3850529	3850530	rs2647074	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DRB1	rs2647074-T	NR	1E-8		0.0186096	[0.012-0.025] unit decrease	Affymetrix [323123] (imputed)	N
614	chr6_dbb_hap3	3850529	3850530	rs2647074	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Aspartate aminotransferase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	6p21.32	HLA-DRB1, HLA-DQA1	rs2647074-?		1E-13		0.0387	[0.029-0.049] unit decrease	Illumina [31500000] (imputed)	N
614	chr6_dbb_hap3	3850529	3850530	rs2647074	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs2647074-T	0.328	1E-34	(Complement C4, C4A.C4B.4481.34.2)	0.32	[0.26-0.38] unit increase	Affymetrix [10572788] (imputed)	N
614	chr6_dbb_hap3	3850529	3850530	rs2647074	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Total bilirubin levels	110,207 Japanese ancestry individuals	NA	6p21.32	HLA-DRB1, HLA-DQA1	rs2647074-?	NR	3E-10		0.03828	[0.026-0.05] unit increase novel	Illumina [6108953] (imputed)	N
614	chr6_dbb_hap3	3850727	3850728	rs539705259	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on CD33dim HLA DR+ CD11b+	1,634 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs539705259-G	0.03706	4E-12		0.8225	[0.59-1.05] unit increase	Illumina [16998734] (imputed)	N
614	chr6_dbb_hap3	3850765	3850766	rs113315602	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	6p21.32	HLA-DRB1	rs113315602-A	0.9027	9E-12		0.003	[0.002-0.004] unit increase	Affymetrix [15275733] (imputed)	N
614	chr6_dbb_hap3	3851055	3851056	rs7760841	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	6p21.32	HLA-DQA1, HLA-DQB1, HLA-DRA, HLA-DRB1, HLA-DRB5, HLA-DRB6	rs7760841-T	0.176847	1E-12		1.1059403	[1.08-1.13]	Affymetrix [8274727] (imputed)	N
614	chr6_dbb_hap3	3851143	3851144	rs145945003	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Yeast infection	52,218 European ancestry cases, 10,235 European ancestry controls	NA	6p21.32	NR	rs145945003-?	NR	1E-7		0.0858	[0.054-0.117] unit decrease	Illumina [at least 560000] (imputed)	N
614	chr6_dbb_hap3	3851177	3851178	rs9271025	34532061	Hodel F	2021-06-11	Virus Evol	Human genomics of the humoral immune response against polyomaviruses.	Anti-JC polyomavirus IgG seropositivity	8,567 European ancestry antibody-positive cases cases, up to 6,836 European ancestry antibody-negative controls	NA	6p21.32		rs9271025-?	NR	4E-46				Affymetrix [NR] (imputed)	N
614	chr6_dbb_hap3	3851286	3851287	rs7761182	27864402	Harris SE	2017-06-01	Int J Epidemiol	Molecular genetic contributions to self-rated health.	Self-rated health	111,749 British ancestry individuals	NA	6p21.32	HLA	rs7761182-?	NR	2E-9		0.03	[NR] unit increase	Affymetrix [~ 17300000] (imputed)	N
614	chr6_dbb_hap3	3851398	3851399	rs13193738	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Strep throat	52,487 European ancestry cases, 22,017 European ancestry controls	NA	6p21.32	NR	rs13193738-?	NR	1E-7		0.0467	[0.029-0.064] unit increase	Illumina [at least 560000] (imputed)	N
614	chr6_dbb_hap3	3851613	3851614	rs113742050	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DRB1	rs113742050-T	NR	4E-12		0.0348298	[0.025-0.045] unit increase	Affymetrix [319769] (imputed)	N
614	chr6_dbb_hap3	3851613	3851614	rs113742050	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DRB1	rs113742050-T	NR	2E-12		0.0353099	[0.025-0.045] unit increase	Affymetrix [319769] (imputed)	N
614	chr6_dbb_hap3	3851694	3851695	rs9271060	26891255	Jung ES	2016-02-18	Inflamm Bowel Dis	HLA-C*01 is a Risk Factor for Crohn's Disease.	Crohn's disease	275 Korean ancestry cases, 2,369 Korean ancestry controls	242 Korean ancestry cases, 1,066 Korean ancestry controls	6p21.32	HLA-DQA1, HLA-DRB1	rs9271060-G	0.77	1E-22		2.857143	[2.33-3.57]	Affymetrix [3387207] (imputed)	N
614	chr6_dbb_hap3	3851705	3851706	rs4713555	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs4713555-?	NR	7E-13				Affymetrix [~ 8270000] (imputed)	N
614	chr6_dbb_hap3	3851705	3851706	rs4713555	26482879	Paternoster L	2015-10-19	Nat Genet	Multi-ancestry genome-wide association study of 21,000 cases and 95,000 controls identifies new risk loci for atopic dermatitis.	Atopic dermatitis	18,900 European ancestry cases, 1,472 Japanese ancestry cases, 422 African American cases, 300 Latino cases, 305 cases, 84,166 European ancestry controls, 7,966 Japanese ancestry controls, 844 African American controls, 1,592 Latino controls, 896 controls	30,588 European ancestry cases, 459 African American cases, 1,012 Chinese ancestry cases, 226,537 European ancestry controls, 729 African American controls, 1,362 Chinese ancestry controls	6p21.32	HLA-DRB1, HLA-DQA1	rs4713555-G	0.73	5E-9	(EA, fixed effects)	1.098901		Illumina [15539996] (imputed)	N
614	chr6_dbb_hap3	3851812	3851813	rs9271066	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	683 Turkish ancestry cases, 1,721 Turkish ancestry controls	NA	6p21.32	HLA-DRB1	rs9271066-?	NR	2E-11	(conditional on rs2844678, rs9262437, rs61444472 and rs17193507)			Illumina [4495750] (imputed)	N
614	chr6_dbb_hap3	3851839	3851840	rs3021304	25108386	Hou S	2014-08-10	Nat Genet	Genome-wide association analysis of Vogt-Koyanagi-Harada syndrome identifies two new susceptibility loci at 1p31.2 and 10q21.3.	Vogt-Koyanagi-Harada syndrome	774 Han Chinese ancestry cases, 2,009 Han Chinese ancestry controls	764 Han Chinese ancestry cases, 3594 Han Chinese ancestry controls	6p21.32	HLA-DRB1, HLA-DQA1	rs3021304-G	0.346	1E-118		2.97	[2.71-3.26]	Affymetrix, Illumina [2208258] (imputed)	N
614	chr6_dbb_hap3	3851916	3851917	rs9461776	25030430	Zignego AL	2014-07-17	Genes Immun	Genome-wide association study of hepatitis C virus- and cryoglobulin-related vasculitis.	Mixed cryoglobulinemia vasculitis in chronic hepatitis C infection	356 European ancestry cases, 447 European ancestry controls	92 European ancestry cases, 179 European ancestry controls	6p21.32	HLA-DQA1, HLA-DRB1	rs9461776-G	0.29	7E-9		2.02	[NR]	Illumina [899641]	N
614	chr6_dbb_hap3	3852164	3852165	rs12660719	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs12660719-A	0.961474	2E-15		0.0823824	[0.062-0.103] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3852267	3852268	rs9271082	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	IgA nephropathy	1,180 East Asian ancestry cases, 899 East Asian ancestry controls	NA			rs9271082-C	NR	8E-9		0.466252	[0.31-0.62] unit increase	Illumina [NR] (imputed)	N
614	chr6_dbb_hap3	3852657	3852658	rs9271100	25642632	Liu H	2015-02-02	Nat Genet	Discovery of six new susceptibility loci and analysis of pleiotropic effects in leprosy.	Leprosy	1,548 Chinese ancestry cases, 2,150 Chinese ancestry controls, 4,362 Chinese ancestry controls with immune-related diseases	6,765 Chinese ancestry cases, 9,505 Chinese ancestry controls	6p21.32	HLA-DR-DQ	rs9271100-T	0.217	8E-95		1.68	[NR]	Illumina [4577171] (imputed)	N
614	chr6_dbb_hap3	3852657	3852658	rs9271100	19838193	Han JW	2009-10-18	Nat Genet	Genome-wide association study in a Chinese Han population identifies nine new susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	1,047 Han Chinese ancestry cases, 1,205 Han Chinese ancestry controls	3,152 Han Chinese ancestry cases, 7,050 Han Chinese ancestry controls	6p21.32	HLA-DRB1	rs9271100-?	NR	1E-12		1.9	[1.59-2.27]	Illumina [493955]	N
614	chr6_dbb_hap3	3852974	3852975	rs9271117	24204295	Han F	2013-10-31	PLoS Genet	Genome wide analysis of narcolepsy in China implicates novel immune loci and reveals changes in association prior to versus after the 2009 H1N1 influenza pandemic.	Narcolepsy (onset before 2009 H1N1 influenza pandemic)	up to 893 Chinese ancestry cases with onset before the 2009 H1N1 influenza pandemic, up to 373 Chinese ancestry cases with onset after the 2009 H1N1 influenza pandemic	NA	6p21.32	NR	rs9271117-?	NR	6E-14		1.75	[NR]	Affymetrix [603382]	N
614	chr6_dbb_hap3	3853557	3853558	rs660895	33517400	Ahluwalia TS	2021-01-30	Hum Mol Genet	Genome-Wide Association Study of Circulating Interleukin 6 Levels Identifies Novel Loci.	Interleukin-6 levels	52,654 European ancestry individuals	14,774 European ancestry individuals	6p21.32	HLADRB1, HLADQA1	rs660895-G	0.186447	2E-10		0.035794	[0.024-0.047] unit increase	Affymetrix, Illumina, Perlegen [2454025] (imputed)	N
614	chr6_dbb_hap3	3853557	3853558	rs660895	32912934	Li M	2020-09-10	J Am Soc Nephrol	Genome-Wide Meta-Analysis Identifies Three Novel Susceptibility Loci and Reveals Ethnic Heterogeneity of Genetic Susceptibility for IgA Nephropathy.	IgA nephropathy	2,628 Chinese ancestry cases, 11,563 Chinese ancestry controls	6,879 Han Chinese ancestry cases, 9,019 Han Chinese ancestry controls, 1,039 Italian ancestry cases, 1,289 Italian ancestry controls	6p21.32	DQB1.DRB1	rs660895-G	0.2533255867854363	1E-14	(East Asian)	1.3539767	[1.25335647918749-1.46267487262285]	NR [3611808] (imputed)	N
614	chr6_dbb_hap3	3853557	3853558	rs660895	26028593	Li M	2015-06-01	Nat Commun	Identification of new susceptibility loci for IgA nephropathy in Han Chinese.	IgA nephropathy	1,434 Han Chinese ancestry cases, 10,661 Han Chinese ancestry controls	6,879 Han Chinese ancestry cases, 9,019 Han Chinese ancestry controls	6p21.32	NR	rs660895-G	0.259	1E-10		1.289	[1.184-1.402]	Illumina [3792949] (imputed)	N
614	chr6_dbb_hap3	3853557	3853558	rs660895	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis (ACPA-positive)	up to 9,585 European ancestry cases, up to 33,742 European ancestry controls	NA	6p21.32	HLA	rs660895-G	NR	1E-300		3.0299		Illumina [129464] (imputed)	N
614	chr6_dbb_hap3	3853557	3853558	rs660895	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis (ACPA-negative)	3,297 European ancestry cases, 15,870 European ancestry controls	NA	6p21.32	HLA	rs660895-G	NR	2E-8		1.2083		Illumina [129464]	N
614	chr6_dbb_hap3	3853557	3853558	rs660895	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis	up to 13,838 European ancestry cases, up to 33,742 European ancestry controls	NA	6p21.32	HLA	rs660895-G	NR	1E-300		2.265		Illumina [129464] (imputed)	N
614	chr6_dbb_hap3	3853557	3853558	rs660895	22197929	Yu XQ	2011-12-25	Nat Genet	A genome-wide association study in Han Chinese identifies multiple susceptibility loci for IgA nephropathy.	IgA nephropathy	1,434 Han Chinese ancestry cases, 4,270 Han Chinese ancestry controls	2,703 Han Chinese ancestry cases, 3,464 Han Chinese ancestry controls	6p21.32	HLA-DRB1	rs660895-G	0.24	4E-20		1.34	[1.26-1.42]	Illumina [444882]	N
614	chr6_dbb_hap3	3853557	3853558	rs660895	17804836	Plenge RM	2007-09-05	N Engl J Med	TRAF1-C5 as a risk locus for rheumatoid arthritis--a genomewide study.	Rheumatoid arthritis	1,522 European ancestry cases, 1,850 European ancestry controls	1,053 European ancestry cases, 1,858 European ancestry controls	6p21.32	HLA-DRB1	rs660895-?	0.21	1E-108		3.62	[NR]	Illumina [297086]	N
614	chr6_dbb_hap3	3853564	3853565	rs36022506	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.32	Intergenic	rs36022506-?		2E-6		1.06	[1.03-1.08]	Illumina [7645193] (imputed)	N
614	chr6_dbb_hap3	3853810	3853811	rs535777	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)(bidirectional)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs535777-G	NR	4E-12				Affymetrix [7846216] (imputed)	N
614	chr6_dbb_hap3	3853810	3853811	rs535777	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Help-seeking from a psychiatrist	36,286 British ancestry cases, 297,126 British ancestry controls	NA	6p21.32	NR	rs535777-G	0.862	1E-9		1.0752687	NR	NR [5276842] (imputed)	N
614	chr6_dbb_hap3	3853810	3853811	rs535777	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Help-seeking from a GP	113,262 British ancestry cases, 219,360 British ancestry controls	NA	6p21.32	NR	rs535777-?	NR	5E-6		1.0362694	[1.02-1.05]	NR [5276842] (imputed)	N
614	chr6_dbb_hap3	3854065	3854066	rs9271170	31766143	Ortega-Azorin C	2019-11-13	Nutrients	Candidate Gene and Genome-Wide Association Studies for Circulating Leptin Levels Reveal Population and Sex-Specific Associations in High Cardiovascular Risk Mediterranean Subjects.	Circulating leptin levels in high cardiovascular risk	351 Spanish mediterranean ancestry men, 615 Spanish mediterranean ancestry women	NA	6p21.32	intergenic	rs9271170-?	0.24	8E-6	(model 2)	0.161	NR unit increase	Illumina [628376]	N
614	chr6_dbb_hap3	3854258	3854259	rs674313	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	6p21.32	NR	rs674313-?	NR	2E-10	(MIC-A)	0.503744	[0.35-0.66] unit increase	Illumina [11901634] (imputed)	N
614	chr6_dbb_hap3	3854258	3854259	rs674313	21131588	Slager SL	2010-12-03	Blood	Genome-wide association study identifies a novel susceptibility locus at 6p21.3 among familial CLL.	Chronic lymphocytic leukemia	407 European ancestry cases, 296 European ancestry controls	252 European ancestry cases, 965 European ancestry controls	6p21.32	HLA-DRB5	rs674313-T	0.26	7E-9		1.69	[1.41-2.01]	Affymetrix [827777]	N
614	chr6_dbb_hap3	3854303	3854304	rs9271176	28165464	Law PJ	2017-02-06	Nat Commun	Genome-wide association analysis implicates dysregulation of immunity genes in chronic lymphocytic leukaemia.	Chronic lymphocytic leukemia	4,478 European ancestry cases and 13,213 European ancestry controls.	1,722 European ancestry cases and 4,385 European ancestry controls.	6p21.32	HLA	rs9271176-G	NR	3E-20		1.29	[1.22-1.36]	Affymetrix, Illumina [> 10000000] (imputed)	N
614	chr6_dbb_hap3	3854454	3854455	rs2858863	31235810	Fung K	2019-06-24	Sci Rep	Genome-wide association study identifies loci for arterial stiffness index in 127,121 UK Biobank participants.	Arterial stiffness index	127,121 European ancestry individuals	NA	6p21.32	HLA-DRB1	rs2858863-C	0.796	5E-6		0.023	[0.013-0.033] unit increase	Affymetrix [~ 10446505] (imputed)	N
614	chr6_dbb_hap3	3854706	3854707	rs9271192	31473137	Moreno-Grau S	2019-08-13	Alzheimers Dement	Genome-wide association analysis of dementia and its clinical endophenotypes reveal novel loci associated with Alzheimer's disease and three causality networks: The GR@ACE project.	Alzheimer's disease	4,120 Spanish ancestry cases, 17,008 cases, 3,289 Spanish ancestry controls, 37,154 controls	1,943 Spanish ancestry cases, 8,572 cases, 3,016 Spanish ancestry controls, 11,312 controls	6p21.32	HLA-DRB5	rs9271192-?	NR	5E-7		1.09	[1.13-1.05]	Affymetrix [up to 7055881] (imputed)	N
614	chr6_dbb_hap3	3854706	3854707	rs9271192	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	6p21.32	HLA-DRB5, HLA-DRB1	rs9271192-C	0.2751	4E-8		5.49	NR z-unit increase	Affymetrix, Illumina [up to 10847151] (imputed)	N
614	chr6_dbb_hap3	3854706	3854707	rs9271192	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease (late onset)	24,087 European ancestry cases, 55,058 European ancestry controls	NA	6p21.32	HLA-DRB5, HLA-DRB1	rs9271192-C	NR	5E-7		5.02	NR z-score increase	Illumina [up to 9862738] (imputed)	N
614	chr6_dbb_hap3	3854706	3854707	rs9271192	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	6p21.32	NR	rs9271192-?	NR	7E-10		1.0530598		Affymetrix [7795605] (imputed)	N
614	chr6_dbb_hap3	3854706	3854707	rs9271192	24162737	Lambert JC	2013-10-27	Nat Genet	Meta-analysis of 74,046 individuals identifies 11 new susceptibility loci for Alzheimer's disease.	Alzheimer's disease (late onset)	17,008 European ancestry cases, 37,154 European ancestry controls	8,572 European ancestry cases, 11,312 European ancestry controls	6p21.32	HLA-DRB5, HLA-DRB1	rs9271192-C	0.276	3E-12		1.11	[1.08-1.18]	Illumina [7055881] (imputed)	N
614	chr6_dbb_hap3	3854766	3854767	rs3997868	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.32	NR	rs3997868-?	NR	1E-13				Affymetrix [~ 8270000] (imputed)	N
614	chr6_dbb_hap3	3854809	3854810	rs5021727	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs5021727-A	0.540791	2E-9		0.0240273	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3854809	3854810	rs5021727	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs5021727-A	0.540791	4E-8		0.0219961	[0.014-0.03] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3854809	3854810	rs5021727	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs5021727-A	0.540791	1E-8		0.0228075	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3854809	3854810	rs5021727	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	6p21.32		rs5021727-?	NR	3E-9		0.00542275	[0.0036-0.0072] unit decrease	NR [NR]	N
614	chr6_dbb_hap3	3854809	3854810	rs5021727	31589552	Lind L	2019-10-07	Metab Syndr Relat Disord	Genome-Wide Association Study of the Metabolic Syndrome in UK Biobank.	Metabolic syndrome	291,107 European ancestry individuals	NA	6p21.32	HLA-DRB1	rs5021727-G	0.461566	2E-8		0.0371336	[0.024-0.05] unit increase	Affymetrix [9463307] (imputed)	N
614	chr6_dbb_hap3	3855211	3855212	rs9271209	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	6p21.32	NR	rs9271209-?	NR	2E-85	(EA)			Affymetrix, Illumina [~ 9000000] (imputed)	N
614	chr6_dbb_hap3	3855794	3855795	rs28752509	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs28752509-C	0.542361	3E-18		0.0343946	[0.027-0.042] unit increase	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3855794	3855795	rs28752509	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs28752509-C	0.542361	1E-17		0.0336941	[0.026-0.041] unit increase	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3855797	3855798	rs28752510	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs28752510-G	0.542559	5E-23		0.0388531	[0.031-0.047] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3855797	3855798	rs28752510	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6p21.32		rs28752510-G	0.542559	2E-17		0.033878	[0.026-0.042] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3855797	3855798	rs28752510	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	6p21.32		rs28752510-G	0.542559	5E-9		0.0230374	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3855797	3855798	rs28752510	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	6p21.32		rs28752510-G	0.542559	3E-13		0.0296091	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3855797	3855798	rs28752510	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	6p21.32		rs28752510-G	0.542559	3E-13		0.0294341	[0.022-0.037] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3855797	3855798	rs28752510	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	6p21.32		rs28752510-G	0.542559	4E-17		0.0335623	[0.026-0.041] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3855797	3855798	rs28752510	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs28752510-G	0.542559	4E-14		0.0312145	[0.023-0.039] unit increase	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3855797	3855798	rs28752510	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	6p21.32		rs28752510-G	0.542559	5E-10		0.0257222	[0.018-0.034] unit increase	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3855797	3855798	rs28752510	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs28752510-G	0.542559	1E-19		0.035402	[0.028-0.043] unit increase	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3855797	3855798	rs28752510	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	6p21.32		rs28752510-G	0.542559	2E-9		0.0240001	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3855797	3855798	rs28752510	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	6p21.32		rs28752510-G	0.542559	3E-14		0.030005	[0.022-0.038] unit increase	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3855797	3855798	rs28752510	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs28752510-G	0.542559	2E-20		0.0362502	[0.029-0.044] unit increase	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3855797	3855798	rs28752510	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	6p21.32		rs28752510-G	0.542559	2E-11		0.027339	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3855797	3855798	rs28752510	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	6p21.32		rs28752510-G	0.542559	2E-15		0.0309552	[0.023-0.039] unit increase	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3855842	3855843	rs13191975	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs13191975-T	NR	4E-12		0.0198638	[0.014-0.025] unit increase	Affymetrix [321169] (imputed)	N
614	chr6_dbb_hap3	3856671	3856672	rs9368730	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	6p21.32	HLA-DRB1, HLA-DQA1	rs9368730-G	0.876	2E-8		1.403	[0.74-2.07] ml/min/1.73m2 decrease	Affymetrix, Illumina [at least 5248638] (imputed)	N
614	chr6_dbb_hap3	3857672	3857673	rs9271296	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR++ monocyte %monocyte	3,595 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9271296-G	0.55558	4E-23		0.3033	[0.24-0.36] unit decrease	Illumina [18380843] (imputed)	N
614	chr6_dbb_hap3	3857854	3857855	rs1966002	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs1966002-T	0.454	8E-31		1.337	[1.29-1.39]	Illumina [11270530] (imputed)	N
614	chr6_dbb_hap3	3858060	3858061	rs4530903	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6p21.32		rs4530903-?	NR	9E-20		1.15592	[1.12-1.19]	NR [685523]	N
614	chr6_dbb_hap3	3858060	3858061	rs4530903	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs4530903-T	0.19	2E-8		4.08	[3.13-5.32]	Illumina [NR] (imputed)	N
614	chr6_dbb_hap3	3858060	3858061	rs4530903	23349640	Vijai J	2013-01-17	PLoS Genet	Susceptibility loci associated with specific and shared subtypes of lymphoid malignancies.	Lymphoma	275 Follicular non-Hodgkin's Lymphoma cases, 269 diffuse large B-cell non-Hodgkin's Lymphoma cases, 198 other non-Hodgkin's Lymphoma cases, 202 Hodgkin's Lymphoma cases, 4,044 controls	202 European ancestry Follicular non-Hodgkin's Lymphoma cases, 367 European ancestry diffuse large B-cell non-Hodgkin's Lymphoma cases, 577 European ancestry other non-Hodgkin's Lymphoma cases, 99 European ancestry Hodgkin's Lymphoma cases, 2,596 European ancestry controls	6p21.32	HLA-DRB5, HLA-DQA1	rs4530903-T	NR	3E-6	(LYM)	1.29	[1.16-1.43]	Affymetrix [530583]	N
614	chr6_dbb_hap3	3858060	3858061	rs4530903	23349640	Vijai J	2013-01-17	PLoS Genet	Susceptibility loci associated with specific and shared subtypes of lymphoid malignancies.	Lymphoma	275 Follicular non-Hodgkin's Lymphoma cases, 269 diffuse large B-cell non-Hodgkin's Lymphoma cases, 198 other non-Hodgkin's Lymphoma cases, 202 Hodgkin's Lymphoma cases, 4,044 controls	202 European ancestry Follicular non-Hodgkin's Lymphoma cases, 367 European ancestry diffuse large B-cell non-Hodgkin's Lymphoma cases, 577 European ancestry other non-Hodgkin's Lymphoma cases, 99 European ancestry Hodgkin's Lymphoma cases, 2,596 European ancestry controls	6p21.32	HLA-DRB5, HLA-DQA1	rs4530903-T	NR	3E-12	(FL)	1.93	[NR]	Affymetrix [530583]	N
614	chr6_dbb_hap3	3858060	3858061	rs4530903	23349640	Vijai J	2013-01-17	PLoS Genet	Susceptibility loci associated with specific and shared subtypes of lymphoid malignancies.	Lymphoma	275 Follicular non-Hodgkin's Lymphoma cases, 269 diffuse large B-cell non-Hodgkin's Lymphoma cases, 198 other non-Hodgkin's Lymphoma cases, 202 Hodgkin's Lymphoma cases, 4,044 controls	202 European ancestry Follicular non-Hodgkin's Lymphoma cases, 367 European ancestry diffuse large B-cell non-Hodgkin's Lymphoma cases, 577 European ancestry other non-Hodgkin's Lymphoma cases, 99 European ancestry Hodgkin's Lymphoma cases, 2,596 European ancestry controls	6p21.32	HLA-DRB5, HLA-DQA1	rs4530903-T	NR	2E-8	(NHL)	1.37	[1.23-1.54]	Affymetrix [530583]	N
614	chr6_dbb_hap3	3858060	3858061	rs4530903	23212062	Fanous AH	2012-12-01	Am J Psychiatry	Genome-wide association study of clinical dimensions of schizophrenia: polygenic effect on disorganized symptoms.	Schizophrenia	2,454 European ancestry cases	NA	6p21.32	HLA-DRB1, HLA-DQA1	rs4530903-?	NR	5E-6	(Negative/disorganized symptoms)	0.0919	[NR] unit increase	Affymetrix [696491]	N
614	chr6_dbb_hap3	3858093	3858094	rs522308	29521573	Buck D	2018-03-01	Mult Scler	Effect of HLA-DRB1 alleles and genetic variants on the development of neutralizing antibodies to interferon beta in the BEYOND and BENEFIT trials.	Neutralising antibody response to interferon beta therapy in multiple sclerosis (presence of antibodies)	361 European, Hispanic, Asian, African or unknown ancestry cases, 580 European, Hispanic, Asian, African or unknown ancestry controls	NA	6p21.32	intergenic	rs522308-T	0.25	2E-15		2.6	[2.05-3.29]	Affymetrix [8671751] (imputed)	N
614	chr6_dbb_hap3	3858652	3858653	rs9271324	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	Composite immunoglobulin trait (IgA x IgG x IgM)	14,183 Icelandic ancestry individuals	2,146 Swedish ancestry individuals	6p21.32	HLA-DQA1	rs9271324-G	0.2804	4E-19		0.11	NR SD units decrease	Illumina [21568490] (imputed)	N
614	chr6_dbb_hap3	3858683	3858684	rs9271325	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	6p21.32		rs9271325-?	NR	2E-8		0.00512579	[0.0033-0.0069] unit increase	NR [NR]	N
614	chr6_dbb_hap3	3858771	3858772	rs34656207	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	6p21.32		rs34656207-T	NR	1E-126		0.0477	[0.044-0.052] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
614	chr6_dbb_hap3	3858771	3858772	rs34656207	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	6p21.32	HLA-DRB1, HLA-DQA1	rs34656207-T	0.36	1E-111		22.4	z-score increase	Affymetrix [4314223] (imputed)	N
614	chr6_dbb_hap3	3858782	3858783	rs3104414	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DQA1	rs3104414-A	NR	9E-13		0.0232695	[0.017-0.03] unit decrease	Affymetrix [323123] (imputed)	N
614	chr6_dbb_hap3	3858782	3858783	rs3104414	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR+ T cell%T cell	3,596 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs3104414-A	0.35131	9E-9		0.1693	[0.11-0.23] unit increase	Illumina [18380873] (imputed)	N
614	chr6_dbb_hap3	3858782	3858783	rs3104414	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Chronic sinus infection	5,291 European ancestry cases, 79,622 European ancestry controls	NA	6p21.32	NR	rs3104414-?	NR	2E-6		0.104	[0.061-0.147] unit decrease	Illumina [at least 560000] (imputed)	N
614	chr6_dbb_hap3	3858820	3858821	rs3104413	26272072	Jiang X	2015-08-13	Rheumatology (Oxford)	An Immunochip-based interaction study of contrasting interaction effects with smoking in ACPA-positive versus ACPA-negative rheumatoid arthritis.	ACPA-positive rheumatoid arthritis (smoking interaction)	340 European ancestry never-smoker cases, 493 European ancestry ever-smoker cases, 746 European ancestry never-smoker controls, 994 European ancestry ever-smoker controls	187 European ancestry never-smoker cases, 421 European ancestry ever-smoker cases, 461 European ancestry never-smoker controls, 447 European ancestry ever-smoker controls	6p21.32	NR	rs3104413-?	NR	2E-10	(adjusted for HLA shared epitope)	1.7857143	[1.35-2.56]	Illumina [133648] (imputed)	N
614	chr6_dbb_hap3	3858820	3858821	rs3104413	25014791	Govind N	2014-08-14	Mol Med	Immunochip identifies novel, and replicates known, genetic risk loci for rheumatoid arthritis in black South Africans.	Rheumatoid arthritis	263 South African Black cases and 374 South African Black controls	NA	6p21.32	HLA-DRB1	rs3104413-?	NR	5E-21		3.88		Illumina [103770]	N
614	chr6_dbb_hap3	3859067	3859068	rs117356394	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PRSS8	5,356 Icelandic ancestry individuals	NA	6p21.32		rs117356394-G	0.01954	5E-13		0.472302	[0.34-0.6] unit increase	Illumina [7506463] (imputed)	N
614	chr6_dbb_hap3	3859067	3859068	rs117356394	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein BAGE3	5,360 Icelandic ancestry individuals	NA	6p21.32		rs117356394-G	0.01954	5E-13		0.48146	[0.35-0.61] unit increase	Illumina [7506463] (imputed)	N
614	chr6_dbb_hap3	3859175	3859176	rs6917212	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on CD33dim HLA DR+ CD11b-	1,635 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs6917212-G	0.76363	2E-23		0.4456	[0.36-0.53] unit decrease	Illumina [16999305] (imputed)	N
614	chr6_dbb_hap3	3859175	3859176	rs6917212	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on CD33dim HLA DR+ CD11b+	1,634 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs6917212-G	0.23621	2E-26		0.4813	[0.39-0.57] unit decrease	Illumina [16998734] (imputed)	N
614	chr6_dbb_hap3	3859175	3859176	rs6917212	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on CD14- CD16+ monocyte	3,621 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs6917212-G	0.77661	1E-48		0.476	[0.41-0.54] unit decrease	Illumina [18212658] (imputed)	N
614	chr6_dbb_hap3	3859175	3859176	rs6917212	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on CD14+ CD16+ monocyte	3,618 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs6917212-G	0.77656	4E-58		0.5221	[0.46-0.58] unit decrease	Illumina [18213821] (imputed)	N
614	chr6_dbb_hap3	3859216	3859217	rs3129754	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs3129754-G	NR	8E-13		0.020445	[0.015-0.026] unit increase	Affymetrix [319769] (imputed)	N
614	chr6_dbb_hap3	3859216	3859217	rs3129754	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs3129754-G	NR	2E-12		0.0200088	[0.014-0.026] unit increase	Affymetrix [319769] (imputed)	N
614	chr6_dbb_hap3	3859227	3859228	rs3129755	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs3129755-A	0.434675	3E-21		0.0380258	[0.03-0.046] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3859227	3859228	rs3129755	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	6p21.32		rs3129755-A	0.434675	1E-20		0.037327	[0.029-0.045] unit increase	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3859227	3859228	rs3129755	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	6p21.32		rs3129755-A	0.434675	2E-23		0.0397462	[0.032-0.048] unit increase	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3859329	3859330	rs4959106	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Interleukin-6 levels	21,758 European ancestry individuals	9,173 individuals	6p21.32		rs4959106-T	0.54	7E-13		0.0741	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
614	chr6_dbb_hap3	3859444	3859445	rs13208697	34785669	Grosche S	2021-11-16	Nat Commun	Rare variant analysis in eczema identifies exonic variants in DUSP1, NOTCH4 and SLC9A4.	Eczema	20,016 European ancestry cases, 380,433 European ancestry controls	NA	6p21.32		rs13208697-T	0.1461	7E-18		0.86		Affymetrix, Illumina [9397031] (imputed)	N
614	chr6_dbb_hap3	3859527	3859528	rs6931277	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Family history of Alzheimer's disease	47,793 European ancestry cases, 328,320 European ancestry controls	NA	6p21.32	HLA-DRB1	rs6931277-T	NR	2E-7		5.22	NR z-score decrease	Affymetrix [10847151] (imputed)	N
614	chr6_dbb_hap3	3859527	3859528	rs6931277	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	6p21.32	HLA-DRB1	rs6931277-T	0.153	8E-11		6.49	NR z-unit decrease	Affymetrix, Illumina [up to 10847151] (imputed)	N
614	chr6_dbb_hap3	3859527	3859528	rs6931277	26272072	Jiang X	2015-08-13	Rheumatology (Oxford)	An Immunochip-based interaction study of contrasting interaction effects with smoking in ACPA-positive versus ACPA-negative rheumatoid arthritis.	ACPA-positive rheumatoid arthritis (smoking interaction)	340 European ancestry never-smoker cases, 493 European ancestry ever-smoker cases, 746 European ancestry never-smoker controls, 994 European ancestry ever-smoker controls	187 European ancestry never-smoker cases, 421 European ancestry ever-smoker cases, 461 European ancestry never-smoker controls, 447 European ancestry ever-smoker controls	6p21.32	NR	rs6931277-?	NR	2E-10	(adjusted for HLA shared epitope)	1.7857143	[1.35-2.56]	Illumina [133648] (imputed)	N
614	chr6_dbb_hap3	3859571	3859572	rs7760731	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p21.32	HLA-DQA1	rs7760731-C	0.642	6E-11		0.087	[0.062-0.112] unit increase	Affymetrix, Illumina [7374092] (imputed)	N
614	chr6_dbb_hap3	3859647	3859648	rs28383223	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	6p21.32	HLA-DRB1, HLA-DQA1	rs28383223-T	0.58	7E-38		12.9	z-score increase	Affymetrix [4312306] (imputed)	N
614	chr6_dbb_hap3	3859674	3859675	rs114991247	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Growth-regulated protein alpha levels	3,505 Finnish ancestry individuals	NA	6p21.32	NR	rs114991247-C		8E-6		0.2092	[0.12-0.3] SD units increase	NR [10700000] (imputed)	N
614	chr6_dbb_hap3	3859823	3859824	rs28383224	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs28383224-A	NR	4E-20		0.0262329	[0.021-0.032] unit decrease	Affymetrix [319769] (imputed)	N
614	chr6_dbb_hap3	3859823	3859824	rs28383224	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs28383224-A	NR	1E-19		0.0258764	[0.02-0.031] unit decrease	Affymetrix [319769] (imputed)	N
614	chr6_dbb_hap3	3859823	3859824	rs28383224	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs28383224-A	NR	9E-10		0.0176752	[0.012-0.023] unit decrease	Affymetrix [321114] (imputed)	N
614	chr6_dbb_hap3	3859823	3859824	rs28383224	29769526	Estrada K	2018-05-16	Nat Commun	A whole-genome sequence study identifies genetic risk factors for neuromyelitis optica.	Neuromyelitis optica (AQP4-IgG-positive)	66 European ancestry cases, 784 European ancestry controls	66 European ancestry cases, 460 European ancestry controls	6p21.32	HLA-DQA1	rs28383224-A	0.42	8E-11		2.66	[1.98-3.56]	Affymetrix [6804788] (imputed)	N
614	chr6_dbb_hap3	3859823	3859824	rs28383224	29769526	Estrada K	2018-05-16	Nat Commun	A whole-genome sequence study identifies genetic risk factors for neuromyelitis optica.	Neuromyelitis optica	66 European ancestry AQP4-IgG antibody seropositive cases, 63 European ancestry AQP4-IgG antibody seronegative cases, 784 European ancestry controls	66 European ancestry AQP4-IgG antibody seropositive cases, 20 European ancestry AQP4-IgG antibody seronegative cases, 460 European ancestry controls	6p21.32	HLA-DQA1	rs28383224-A	0.42	6E-12		2.24	[1.78-2.82]	Affymetrix [6804788] (imputed)	N
614	chr6_dbb_hap3	3859912	3859913	rs9271348	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein KCNE2	5,364 Icelandic ancestry individuals	NA	6p21.32		rs9271348-G	0.3219	7E-13		0.143439	[0.1-0.18] unit decrease	Illumina [7506463] (imputed)	N
614	chr6_dbb_hap3	3859912	3859913	rs9271348	24532677	Bossini-Castillo L	2014-02-14	Ann Rheum Dis	A genome-wide association study of rheumatoid arthritis without antibodies against citrullinated peptides.	Rheumatoid arthritis (ACPA-negative)	1,148 European ancestry cases, 6,008 European ancestry controls	774 European ancestry cases, 1,079 European ancestry controls	6p21.32	HLA-DRB1, HLA-DQA1	rs9271348-?		5E-7		1.2821	[NR]	Illumina [452367]	N
614	chr6_dbb_hap3	3859983	3859984	rs1846190	34493870	Wightman DP	2021-09-07	Nat Genet	A genome-wide association study with 1,126,563 individuals identifies new risk loci for Alzheimer's disease.	Late-onset Alzheimer's disease	90,338 cases, 1,036,225 controls	NA	6p21.32		rs1846190-?	NR	3E-14				Illumina [NR] (imputed)	N
614	chr6_dbb_hap3	3860000	3860001	rs9271349	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs9271349-A	NR	4E-9		0.0217606	[0.015-0.029] unit decrease	Affymetrix [321169] (imputed)	N
614	chr6_dbb_hap3	3860050	3860051	rs112430285	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	6p21.32	NR	rs112430285-?	NR	8E-12				Affymetrix [~ 8270000] (imputed)	N
614	chr6_dbb_hap3	3860153	3860154	rs33915496	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	89,266 East Asian ancestry individuals	NA	6p21.32	NR	rs33915496-A	0.543315	1E-16		0.039594	[0.03-0.049] SD units increase	Affymetrix, Illumina [16289068] (imputed)	N
614	chr6_dbb_hap3	3860167	3860168	rs28383228	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs28383228-A	0.135	4E-18	(Interleukin-21, IL21.7124.18.3)	0.34	[0.26-0.42] unit increase	Affymetrix [10572788] (imputed)	N
614	chr6_dbb_hap3	3860167	3860168	rs28383228	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs28383228-A	0.135	3E-35	(Ubiquitin carboxyl-terminal hydrolase 25, USP25.9215.117.3)	0.48	[0.4-0.56] unit increase	Affymetrix [10572788] (imputed)	N
614	chr6_dbb_hap3	3860167	3860168	rs28383228	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs28383228-A	0.135	2E-16	(MHC class I polypeptide-related sequence B, MICB.5102.55.3)	0.32	[0.24-0.4] unit increase	Affymetrix [10572788] (imputed)	N
614	chr6_dbb_hap3	3860327	3860328	rs28383233	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	6p21.32		rs28383233-G	0.418462	4E-14		0.029595	[0.022-0.037] unit increase	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3860365	3860366	rs34077986	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs34077986-C	NR	5E-11		0.0189538	[0.013-0.025] unit increase	Affymetrix [321169] (imputed)	N
614	chr6_dbb_hap3	3860486	3860487	rs33932178	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	95,717 East Asian ancestry individuals	NA	6p21.32		rs33932178-G	0.449956	3E-22		0.0431265	[0.034-0.052] unit decrease	Illumina [13471431] (imputed)	N
614	chr6_dbb_hap3	3860492	3860493	rs28383241	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	6p21.32		rs28383241-A	NR	9E-40		0.0249	[0.021-0.029] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
614	chr6_dbb_hap3	3860543	3860544	rs34694416	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Basal cell carcinoma	31,787 European ancestry cases, 619,351 European ancestry controls	NA	6p21.32	HLA-DQA1	rs34694416-T	0.116415	8E-23		1.14	[1.11-1.16]	Affymetrix, Illumina [up to 9061544] (imputed)	N
614	chr6_dbb_hap3	3860751	3860752	rs73730372	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR++ monocyte %monocyte	3,595 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs73730372-T	0.20013	2E-10		0.2818	[0.2-0.37] unit decrease	Illumina [18380843] (imputed)	N
614	chr6_dbb_hap3	3860751	3860752	rs73730372	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs73730372-?	NR	9E-26				Affymetrix [~ 8270000] (imputed)	N
614	chr6_dbb_hap3	3860751	3860752	rs73730372	27285765	Chen D	2016-06-07	Oncotarget	Pooled analysis of genome-wide association studies of cervical intraepithelial neoplasia 3 (CIN3) identifies a new susceptibility locus.	Cervical cancer	1,553 Swedish ancestry cervical intraepithelial neoplasia grade 3 cases, 81 Swedish ancestry cervical cancer cases,  4,442 Swedish ancestry controls	827 Swedish ancestry cervical intraepithelial neoplasia grade 3 cases, 123 Swedish ancestry cervical cancer cases, 1,715 European ancestry controls	6p21.32	intergenic	rs73730372-?		3E-19		1.67	[1.49-1.85]	Illumina [5471179]	N
614	chr6_dbb_hap3	3860779	3860780	rs3129757	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Cathepsin L1 levels	21,758 European ancestry individuals	9,173 individuals	6p21.32		rs3129757-A	0.15	9E-17		0.0997	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
614	chr6_dbb_hap3	3860909	3860910	rs28752520	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs28752520-C	0.227	4E-23	(Complement C4, C4A.C4B.4481.34.2)	0.31	[0.25-0.37] unit increase	Affymetrix [10572788] (imputed)	N
614	chr6_dbb_hap3	3860942	3860943	rs28752523	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	6p21.32		rs28752523-C	0.806174	2E-12		0.0353026	[0.025-0.045] unit increase	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3860942	3860943	rs28752523	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to omega-3 fatty acids	115,006 European ancestry individuals	NA	6p21.32		rs28752523-C	0.806174	4E-8		0.0275581	[0.018-0.037] unit increase	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3860942	3860943	rs28752523	33204752	Butler-Laporte G	2020-09-24	Open Forum Infect Dis	Genetic Determinants of Antibody-Mediated Immune Responses to Infectious Diseases Agents: A Genome-Wide and HLA Association Study.	Human herpes virus 6 IE1A antibody levels	6,968 White British ancestry individuals	NA	6p21.32	HLA-DQA1	rs28752523-C	0.806	8E-9		0.12	[0.079-0.161] unit decrease	NR [25472218] (imputed)	N
614	chr6_dbb_hap3	3861050	3861051	rs73730377	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FAS	5,367 Icelandic ancestry individuals	NA	6p21.32		rs73730377-G	0.179	9E-13		0.172154	[0.12-0.22] unit increase	Illumina [7506463] (imputed)	N
614	chr6_dbb_hap3	3861050	3861051	rs73730377	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.32	NR	rs73730377-?	NR	2E-23				Affymetrix [~ 8270000] (imputed)	N
614	chr6_dbb_hap3	3861242	3861243	rs28752534	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	6p21.32		rs28752534-T	0.699585	3E-10		0.0269354	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3861242	3861243	rs28752534	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	6p21.32		rs28752534-T	0.699588	5E-10		0.0255499	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3861242	3861243	rs28752534	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p21.32	HLA-DRB3	rs28752534-T	0.64	2E-30		1.11	[1.1-1.13] unit increase	Illumina [at least 560000] (imputed)	N
614	chr6_dbb_hap3	3861460	3861461	rs28383254	29903748	Debiec H	2018-06-14	J Am Soc Nephrol	Transethnic, Genome-Wide Analysis Reveals Immune-Related Risk Alleles and Phenotypic Correlates in Pediatric Steroid-Sensitive Nephrotic Syndrome.	Childhood steroid-sensitive nephrotic syndrome	85 Maghrebian cases, 261 Maghrebian controls	NA	6p21.32	HLA-DRB1, HLA-DQA1	rs28383254-?	NR	3E-8		5.7	[3.1-10.6]	Illumina [at least 7529344] (imputed)	N
614	chr6_dbb_hap3	3861724	3861725	rs28383264	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs28383264-T	0.201	1E-12	(Hepatocyte nuclear factor 4-alpha, HNF4A.10041.3.3)	0.24	[0.18-0.3] unit increase	Affymetrix [10572788] (imputed)	N
614	chr6_dbb_hap3	3861787	3861788	rs3104412	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	6p21.32	NR	rs3104412-?	NR	1E-142	(conditional)			Affymetrix [15688218] (imputed)	N
614	chr6_dbb_hap3	3861839	3861840	rs3135005	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	6p21.32	NR	rs3135005-?	NR	2E-9		5.995	NR z score decrease	Illumina [at least 830937] (imputed)	N
614	chr6_dbb_hap3	3861980	3861981	rs70993900	30230522	Zhang S	2018-09-19	Br J Dermatol	Subtype-Specific Inherited Predisposition to Pemphigus in Chinese Population.	Pemphigus vulgaris	255 Chinese ancestry cases, 501 Chinese ancestry controls	110 Chinese ancestry cases, 604 Chinese ancestry controls	6p21.32	NR	rs70993900-?	0.09	1E-45		18.57	NR	Affymetrix [416397]	N
614	chr6_dbb_hap3	3861980	3861981	rs70993900	30230522	Zhang S	2018-09-19	Br J Dermatol	Subtype-Specific Inherited Predisposition to Pemphigus in Chinese Population.	Pemphigus	350 Chinese ancestry cases, 501 Chinese ancestry controls	146 Chinese ancestry cases, 604 Chinese ancestry controls	6p21.32	NR	rs70993900-?	0.09	1E-43		10.92	NR	Affymetrix [416397]	N
614	chr6_dbb_hap3	3862058	3862059	rs11751024	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	6p21.32		rs11751024-C	0.601399	2E-18		0.0366905	[0.028-0.045] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3862058	3862059	rs11751024	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	CAG-882 sp003486385 abundance in stool	5,959 Finnish ancestry individuals	NA	6p21.32		rs11751024-A	0.400705	5E-8		0.104999	[0.067-0.143] unit increase	Illumina [7980478] (imputed)	N
614	chr6_dbb_hap3	3862058	3862059	rs11751024	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TGM3	5,368 Icelandic ancestry individuals	NA	6p21.32		rs11751024-A	0.3876	6E-13		0.141161	[0.1-0.18] unit decrease	Illumina [7506463] (imputed)	N
614	chr6_dbb_hap3	3862058	3862059	rs11751024	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.32	NR	rs11751024-?	NR	5E-24				Affymetrix [~ 8270000] (imputed)	N
614	chr6_dbb_hap3	3862058	3862059	rs11751024	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs11751024-?	NR	9E-35				Affymetrix [~ 8270000] (imputed)	N
614	chr6_dbb_hap3	3862198	3862199	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	VLDL cholesterol levels	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	7E-27		0.0483058	[0.039-0.057] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3862198	3862199	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total phospholipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	3E-13		0.0313476	[0.023-0.04] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3862198	3862199	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small LDL	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	9E-20		0.0410279	[0.032-0.05] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3862198	3862199	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium VLDL	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	2E-27		0.0484871	[0.04-0.057] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3862198	3862199	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium LDL	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	8E-20		0.0412131	[0.032-0.05] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3862198	3862199	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	2E-19		0.0399601	[0.031-0.049] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3862198	3862199	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in LDL	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	9E-17		0.0374103	[0.029-0.046] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3862198	3862199	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total free cholesterol levels	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	8E-17		0.036746	[0.028-0.045] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3862198	3862199	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol minus HDL-C levels	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	4E-18		0.038935	[0.03-0.048] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3862198	3862199	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Polyunsaturated fatty acid levels	115,006 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665908	4E-22		0.0423547	[0.034-0.051] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3862198	3862199	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	2E-28		0.0496534	[0.041-0.058] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3862198	3862199	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small LDL	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	1E-16		0.0372035	[0.028-0.046] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3862198	3862199	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium VLDL	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	4E-27		0.0485352	[0.04-0.057] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3862198	3862199	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium LDL	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	2E-18		0.0396392	[0.031-0.048] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3862198	3862199	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-6 fatty acid levels	115,006 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665908	3E-21		0.0416405	[0.033-0.05] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3862198	3862199	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Linoleic acid levels	115,006 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665908	1E-22		0.0433006	[0.035-0.052] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3862198	3862199	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	9E-26		0.0473496	[0.039-0.056] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3862198	3862199	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	8E-26		0.0473724	[0.039-0.056] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3862198	3862199	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small LDL particles	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	2E-20		0.0419422	[0.033-0.051] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3862198	3862199	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium VLDL particles	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	4E-27		0.0485075	[0.04-0.057] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3862198	3862199	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium LDL particles	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	6E-19		0.0402296	[0.031-0.049] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3862198	3862199	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of VLDL particles	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	7E-27		0.0480395	[0.039-0.057] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3862198	3862199	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	8E-28		0.0491721	[0.04-0.058] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3862198	3862199	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small LDL	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	6E-22		0.043478	[0.035-0.052] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3862198	3862199	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium LDL	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	2E-21		0.0430313	[0.034-0.052] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3862198	3862199	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in LDL	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	6E-18		0.0389019	[0.03-0.048] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3862198	3862199	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	2E-27		0.0488991	[0.04-0.058] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3862198	3862199	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small LDL	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	6E-19		0.0401589	[0.031-0.049] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3862198	3862199	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	3E-19		0.0405703	[0.032-0.049] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3862204	3862205	rs61126090	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Terminally Differentiated CD4-CD8- T cell Absolute Count	3,395 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs61126090-G	0.19907	1E-12		0.2671	[0.19-0.34] unit decrease	Illumina [18332267] (imputed)	N
614	chr6_dbb_hap3	3862206	3862207	rs28383283	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Terminally Differentiated CD4-CD8- T cell %T cell	3,427 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs28383283-T	0.2651	1E-9		0.2109	[0.14-0.28] unit decrease	Illumina [18349913] (imputed)	N
614	chr6_dbb_hap3	3862577	3862578	rs28383307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large HDL	115,082 European ancestry individuals	NA	6p21.32		rs28383307-C	0.805689	2E-9		0.0282931	[0.019-0.037] unit increase	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3862577	3862578	rs28383307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large HDL	115,082 European ancestry individuals	NA	6p21.32		rs28383307-C	0.805689	3E-9		0.0277214	[0.019-0.037] unit increase	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3862577	3862578	rs28383307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	6p21.32		rs28383307-C	0.805689	8E-11		0.0304025	[0.021-0.04] unit increase	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3862577	3862578	rs28383307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	6p21.32		rs28383307-C	0.805689	6E-9		0.026858	[0.018-0.036] unit increase	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3862577	3862578	rs28383307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	6p21.32		rs28383307-C	0.805689	2E-11		0.0315135	[0.022-0.041] unit increase	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3862604	3862605	rs28383308	33768542	Liu Y	2021-03-26	Clin Pharmacol Ther	Class II HLA Variants Associate with Risk of Pegaspargase Hypersensitivity.	Asparaginase hypersensitivity in acute lymphoblastic leukemia	2,290 European ancestry individuals, 310 African ancestry individuals, 798 Native American individuals, 112 Asian ancestry individuals, 387 individuals	NA	6p21.32	HLA-DQA1	rs28383308-T	NR	5E-14		1.95	[NR]	Affymetrix, Illumina [NR] (imputed)	N
614	chr6_dbb_hap3	3862616	3862617	rs9271365	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hypothyroidism	30,155 European ancestry cases, 379,986 European ancestry controls, 1,114 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	6p21.32		rs9271365-G	NR	5E-123		0.2484	[0.23-0.27] unit increase	Affymetrix, Illumina [25801083] (imputed)	N
614	chr6_dbb_hap3	3862616	3862617	rs9271365	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hashimoto thyroiditis	15,654 European ancestry cases, 379,986 European ancestry controls, 537 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	6p21.32		rs9271365-G	NR	1E-39		0.2531	[0.22-0.29] unit increase	Affymetrix, Illumina [25797652] (imputed)	N
614	chr6_dbb_hap3	3862616	3862617	rs9271365	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	6p21.32	NR	rs9271365-?	NR	7E-35				Affymetrix [~ 8270000] (imputed)	N
614	chr6_dbb_hap3	3862653	3862654	rs13191810	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium VLDL	115,082 European ancestry individuals	NA	6p21.32		rs13191810-C	0.687691	5E-25		0.0445033	[0.036-0.053] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3862653	3862654	rs13191810	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs13191810-C	0.687691	2E-21		0.040583	[0.032-0.049] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3862653	3862654	rs13191810	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs13191810-C	0.687691	3E-22		0.0414982	[0.033-0.05] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3862653	3862654	rs13191810	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs13191810-C	0.687691	5E-24		0.0433674	[0.035-0.052] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3862653	3862654	rs13191810	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs13191810-C	0.687691	3E-16		0.0350026	[0.027-0.043] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3862653	3862654	rs13191810	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	6p21.32		rs13191810-C	0.687723	6E-17		0.0344759	[0.026-0.043] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3862653	3862654	rs13191810	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs13191810-C	0.687691	1E-22		0.0419227	[0.034-0.05] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3862653	3862654	rs13191810	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs13191810-C	0.687691	3E-24		0.0434772	[0.035-0.052] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3862653	3862654	rs13191810	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs13191810-C	0.687691	7E-17		0.0354956	[0.027-0.044] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3862653	3862654	rs13191810	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-3 fatty acid levels	115,006 European ancestry individuals	NA	6p21.32		rs13191810-C	0.687723	5E-14		0.0321812	[0.024-0.041] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3862653	3862654	rs13191810	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs13191810-C	0.687691	5E-25		0.0444045	[0.036-0.053] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3862653	3862654	rs13191810	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large VLDL particles	115,082 European ancestry individuals	NA	6p21.32		rs13191810-C	0.687691	2E-22		0.0414621	[0.033-0.05] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3862653	3862654	rs13191810	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large VLDL particles	115,082 European ancestry individuals	NA	6p21.32		rs13191810-C	0.687691	9E-24		0.0430671	[0.035-0.051] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3862653	3862654	rs13191810	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of chylomicrons and extremely large VLDL particles	115,082 European ancestry individuals	NA	6p21.32		rs13191810-C	0.687691	2E-16		0.0351965	[0.027-0.044] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3862653	3862654	rs13191810	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	6p21.32		rs13191810-C	0.687691	1E-8		0.0223672	[0.015-0.03] unit increase	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3862653	3862654	rs13191810	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for VLDL particles	115,082 European ancestry individuals	NA	6p21.32		rs13191810-C	0.687691	4E-18		0.0359074	[0.028-0.044] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3862653	3862654	rs13191810	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.32	Intergenic	rs13191810-T	NR	1E-6	(men)	0.0240553	[0.014-0.034] unit decrease	Illumina [13520550] (imputed)	N
614	chr6_dbb_hap3	3862676	3862677	rs9271366	26278503	Huang C	2015-11-01	Gastroenterology	Characterization of genetic loci that affect susceptibility to inflammatory bowel diseases in African Americans.	Ulcerative colitis	361 African American cases, 1,797 African American controls	NA	6p21.32	HLA-DQA1	rs9271366-A	NR	7E-6		1.627	[1.315-2.013]	Illumina [130241]	N
614	chr6_dbb_hap3	3862676	3862677	rs9271366	23850713	Yang SK	2013-07-14	Gut	Genome-wide association study of Crohn's disease in Koreans revealed three new susceptibility loci and common attributes of genetic susceptibility across ethnic populations.	Crohn's disease	532 Korean ancestry cases, 733 Korean ancestry controls	1,779 Korean ancestry cases, 1,709 Korean ancestry controls	6p21.32	HLA-DRA, HLA-DRB5, BTNL2, HLA-DRB1, HLA-DQA1	rs9271366-A	0.888	5E-12		1.66	[1.44-1.92]	Illumina [5664371] (imputed)	N
614	chr6_dbb_hap3	3862676	3862677	rs9271366	23511034	Yang SK	2013-04-01	Inflamm Bowel Dis	Genome-wide association study of ulcerative colitis in Koreans suggests extensive overlapping of genetic susceptibility with Caucasians.	Ulcerative colitis	388 Korean ancestry cases, 739 Korean ancestry controls	417 Korean ancestry cases, 732 Korean ancestry controls	6p21.32	HLA-DRB1, HLA-DQA1	rs9271366-G	0.11	1E-18		2.1	[1.78-2.48]	Illumina [581060]	N
614	chr6_dbb_hap3	3862676	3862677	rs9271366	21699788	Okada Y	2011-06-20	Gastroenterology	HLA-Cw*1202-B*5201-DRB1*1502 haplotype increases risk for ulcerative colitis but reduces risk for Crohn's disease.	Ulcerative colitis or Crohn's disease	372 Japanese ancestry Crohn's disease cases, 372 Japanese ancestry ulcerative colitis cases	607 Japanese ancestry Crohn's disease cases, 376 Japanese ancestry ulcerative colitis cases	6p21.32	MHC, HLA-DRB1	rs9271366-C	0.21	2E-70	(UC vs. CD)	4.44	[3.74-5.27]	Illumina [461368]	N
614	chr6_dbb_hap3	3862676	3862677	rs9271366	20694011	Ferreira RC	2010-08-08	Nat Genet	Association of IFIH1 and other autoimmunity risk alleles with selective IgA deficiency.	Immunoglobulin A	430 European ancestry cases, 1,090 European ancestry controls	342 European ancestry cases, 886 European ancestry controls	6p21.32	HLA-DRB1	rs9271366-?	0.85	3E-33		7.69	[5.26-11.11]	Illumina [2057134] (imputed)	N
614	chr6_dbb_hap3	3862676	3862677	rs9271366	20598377	Nischwitz S	2010-06-30	J Neuroimmunol	Evidence for VAV2 and ZNF433 as susceptibility genes for multiple sclerosis.	Multiple sclerosis	590 European ancestry cases, 825 European ancestry controls	NA	6p21.32	DQA1	rs9271366-G	NR	4E-17		2.62	[2.09-3.28]	Illumina [~ 300000]	N
614	chr6_dbb_hap3	3862676	3862677	rs9271366	19838195	Gateva V	2009-11-01	Nat Genet	A large-scale replication study identifies TNIP1, PRDM1, JAZF1, UHRF1BP1 and IL10 as risk loci for systemic lupus erythematosus.	Systemic lupus erythematosus	1,310 European ancestry cases, 7,859 European ancestry controls	1,963 European ancestry cases, 4,329 European ancestry controls	6p21.32	HLA-DRB1	rs9271366-G	0.16	1E-7		1.26	[1.18-1.36]	Illumina [~ 2100000] (imputed)	N
614	chr6_dbb_hap3	3862676	3862677	rs9271366	19525955	Bahlo M	2009-06-14	Nat Genet	Genome-wide association study identifies new multiple sclerosis susceptibility loci on chromosomes 12 and 20.	Multiple sclerosis	1,618 European ancestry cases, 3,413 European ancestry controls	2,256 European ancestry cases, 2,310 European ancestry controls	6p21.32	HLA-DRB1	rs9271366-G	0.15	7E-184		2.78	[NR]	Illumina [302098]	N
614	chr6_dbb_hap3	3862730	3862731	rs9271367	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on plasmacytoid Dendritic Cell	2,872 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9271367-A	0.85909	2E-29		0.5463	[0.45-0.64] unit decrease	Illumina [17926607] (imputed)	N
614	chr6_dbb_hap3	3862730	3862731	rs9271367	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on myeloid Dendritic Cell	2,872 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9271367-A	0.85909	3E-35		0.5882	[0.5-0.68] unit decrease	Illumina [17926605] (imputed)	N
614	chr6_dbb_hap3	3862730	3862731	rs9271367	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on Dendritic Cell	2,871 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9271367-A	0.85909	4E-32		0.5586	[0.47-0.65] unit decrease	Illumina [17926566] (imputed)	N
614	chr6_dbb_hap3	3862730	3862731	rs9271367	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on CD33- HLA DR+	1,635 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9271367-A	0.85909	2E-12		0.4146	[0.3-0.53] unit decrease	Illumina [16999305] (imputed)	N
614	chr6_dbb_hap3	3862820	3862821	rs607929	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	6p21.32	intergenic	rs607929-G	0.4428	4E-9		0.02092051	[0.014-0.028] unit increase	Affymetrix [~ 2500000] (imputed)	N
614	chr6_dbb_hap3	3862889	3862890	rs9271375	35074870	Chia R	2022-02-01	Proc Natl Acad Sci U S A	Identification of genetic risk loci and prioritization of genes and pathways for myasthenia gravis: a genome-wide association study.	Late-onset myasthenia gravis	1,278 European ancestry cases, 33,652 European ancestry controls	308 European ancestry cases, 7,056 European ancestry controls	6p21.32		rs9271375-A	0.481	2E-19		0.66	[0.6-0.72]	Illumina [24006246] (imputed)	N
614	chr6_dbb_hap3	3862889	3862890	rs9271375	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Urolithiasis	6,223 European ancestry cases, 482,123 European ancestry controls, 11,699 East Asian ancestry cases, 167,027 East Asian ancestry controls	NA	6p21.32		rs9271375-A	NR	5E-11		0.0785	[0.055-0.102] unit decrease	Affymetrix, Illumina [25845211] (imputed)	N
614	chr6_dbb_hap3	3862979	3862980	rs28688825	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	6p21.32	NR	rs28688825-?	NR	1E-28				Affymetrix [~ 8270000] (imputed)	N
614	chr6_dbb_hap3	3862979	3862980	rs28688825	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs28688825-?	NR	9E-24				Affymetrix [~ 8270000] (imputed)	N
614	chr6_dbb_hap3	3862979	3862980	rs28688825	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	6p21.32	AGER, AGPAT1, BRD2, BTNL2, C6orf10, EGFL8, GPSM3, HCG23, HLA-DMA, HLA-DMB, HLA-DOB, HLA-DQA1, HLA-DQA2, HLA-DQB1, HLA-DQB2, HLA-DRA, HLA-DRB1, HLA-DRB5, HLA-DRB6, LOC100294145, MIR6721, MIR6833, NOTCH4, PBX2, PPT2-EGFL8, PSMB8, PSMB9, RNF5, RNF5P1, TAP1, TAP2, TAPSAR1	rs28688825-A	0.883307	5E-31		1.1379826	[1.12-1.16]	Affymetrix [8274727] (imputed)	N
614	chr6_dbb_hap3	3863035	3863036	rs28383314	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	6p21.32		rs28383314-T	0.377043	8E-21		0.0374324	[0.03-0.045] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3863035	3863036	rs28383314	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	6p21.32		rs28383314-T	0.377036	7E-12		0.0274798	[0.02-0.035] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3863035	3863036	rs28383314	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs28383314-T	0.377036	2E-25		0.043251	[0.035-0.051] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3863035	3863036	rs28383314	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large HDL	115,082 European ancestry individuals	NA	6p21.32		rs28383314-T	0.377036	6E-13		0.0298794	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3863035	3863036	rs28383314	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs28383314-T	0.377036	2E-27		0.0445853	[0.037-0.053] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3863035	3863036	rs28383314	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small HDL	115,082 European ancestry individuals	NA	6p21.32		rs28383314-T	0.377036	4E-24		0.0415957	[0.034-0.05] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3863035	3863036	rs28383314	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium HDL	115,082 European ancestry individuals	NA	6p21.32		rs28383314-T	0.377036	2E-21		0.0397131	[0.032-0.048] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3863035	3863036	rs28383314	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large HDL	115,082 European ancestry individuals	NA	6p21.32		rs28383314-T	0.377036	4E-8		0.0221728	[0.014-0.03] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3863035	3863036	rs28383314	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in VLDL	115,082 European ancestry individuals	NA	6p21.32		rs28383314-T	0.377036	9E-23		0.0401294	[0.032-0.048] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3863035	3863036	rs28383314	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in HDL	115,082 European ancestry individuals	NA	6p21.32		rs28383314-T	0.377036	8E-21		0.0389843	[0.031-0.047] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3863035	3863036	rs28383314	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total triglycerides levels	115,082 European ancestry individuals	NA	6p21.32		rs28383314-T	0.377036	8E-24		0.0412963	[0.033-0.049] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3863035	3863036	rs28383314	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small HDL	115,082 European ancestry individuals	NA	6p21.32		rs28383314-T	0.377036	5E-22		0.0409595	[0.033-0.049] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3863035	3863036	rs28383314	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total fatty acid levels	115,006 European ancestry individuals	NA	6p21.32		rs28383314-T	0.377051	4E-25		0.0434702	[0.035-0.052] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3863035	3863036	rs28383314	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Saturated fatty acid levels	115,006 European ancestry individuals	NA	6p21.32		rs28383314-T	0.377051	4E-20		0.0385885	[0.03-0.047] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3863035	3863036	rs28383314	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6p21.32		rs28383314-T	0.377036	9E-13		0.0304107	[0.022-0.039] unit increase	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3863035	3863036	rs28383314	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	6p21.32		rs28383314-T	0.377036	1E-11		0.0288571	[0.021-0.037] unit increase	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3863035	3863036	rs28383314	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small HDL	115,082 European ancestry individuals	NA	6p21.32		rs28383314-T	0.377036	8E-22		0.0405037	[0.032-0.049] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3863035	3863036	rs28383314	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6p21.32		rs28383314-T	0.377036	6E-17		0.0342966	[0.026-0.042] unit increase	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3863035	3863036	rs28383314	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	6p21.32		rs28383314-C	NR	4E-59		0.0343	[0.03-0.038] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
614	chr6_dbb_hap3	3863035	3863036	rs28383314	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	6p21.32		rs28383314-C	NR	9E-101		0.0363	[0.033-0.04] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
614	chr6_dbb_hap3	3863035	3863036	rs28383314	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.32		rs28383314-T	0.375	6E-103				Affymetrix [10369434] (imputed)	N
614	chr6_dbb_hap3	3863035	3863036	rs28383314	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DQA1	rs28383314-T	NR	2E-12		0.0225613	[0.016-0.029] unit decrease	Affymetrix [323858] (imputed)	N
614	chr6_dbb_hap3	3863035	3863036	rs28383314	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	HLA-DQA1	rs28383314-T	NR	4E-11		0.0212936	[0.015-0.028] unit decrease	Affymetrix [127266] (imputed)	N
614	chr6_dbb_hap3	3863035	3863036	rs28383314	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DQA1	rs28383314-T	NR	5E-19		0.0281171	[0.022-0.034] unit increase	Affymetrix [323123] (imputed)	N
614	chr6_dbb_hap3	3863035	3863036	rs28383314	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs28383314-T	NR	1E-20		0.027344	[0.022-0.033] unit decrease	Affymetrix [321169] (imputed)	N
614	chr6_dbb_hap3	3863035	3863036	rs28383314	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p21.32	NR	rs28383314-C	0.637389	2E-194				Affymetrix, Illumina [19872809] (imputed)	N
614	chr6_dbb_hap3	3863035	3863036	rs28383314	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	6p21.32	NR	rs28383314-C	0.624131	6E-199		0.061635	[0.058-0.066] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
614	chr6_dbb_hap3	3863035	3863036	rs28383314	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	6p21.32	HLA-DQA1	rs28383314-T	0.375891	4E-76		0.0378536	[0.034-0.042] unit decrease	Affymetrix [NR] (imputed)	N
614	chr6_dbb_hap3	3863035	3863036	rs28383314	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	6p21.32	LINC00336	rs28383314-?	NR	4E-49		0.0398	[0.035-0.045] unit decrease	Affymetrix [5701386] (imputed)	N
614	chr6_dbb_hap3	3863035	3863036	rs28383314	30643255	Kristjansson RP	2019-01-14	Nat Genet	A loss-of-function variant in ALOX15 protects against nasal polyps and chronic rhinosinusitis.	Nasal polyps	86 European ancestry whole-genome sequenced cases, 4,280 European ancestry cases, 13,941 European ancestry whole-genome sequenced controls, 700,740 European ancestry controls	NA	6p21.32	intergenic	rs28383314-C	0.630	5E-8		1.14	[1.09-1.19]	Affymetrix, Illumina [up to 37123566] (imputed)	N
614	chr6_dbb_hap3	3863035	3863036	rs28383314	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	6p21.32	HLA-DQA1	rs28383314-T	0.377	3E-9		0.086	[0.059-0.113] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
614	chr6_dbb_hap3	3863035	3863036	rs28383314	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	6p21.32	intergenic	rs28383314-C	0.6172	9E-64		0.06028895	[0.053-0.067] unit increase	Affymetrix [~ 2500000] (imputed)	N
614	chr6_dbb_hap3	3863035	3863036	rs28383314	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	6p21.32	intergenic	rs28383314-C	0.6171	7E-27		0.03829286	[0.031-0.045] unit increase	Affymetrix [~ 2500000] (imputed)	N
614	chr6_dbb_hap3	3863035	3863036	rs28383314	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	6p21.32	intergenic	rs28383314-C	0.6172	1E-60		0.05870737	[0.052-0.066] unit increase	Affymetrix [~ 2500000] (imputed)	N
614	chr6_dbb_hap3	3863101	3863102	rs144934262	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on CD33+ HLA DR+ CD14-	1,579 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs144934262-T	0.05991	2E-10		0.5304	[0.37-0.69] unit increase	Illumina [16961968] (imputed)	N
614	chr6_dbb_hap3	3863279	3863280	rs9271393	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Peripheral artery disease	7,114 European ancestry cases, 475,964 European ancestry controls, 4,112 East Asian ancestry cases, 173,601 East Asian ancestry controls	NA	6p21.32		rs9271393-C	NR	2E-8		0.116	[0.075-0.157] unit increase	Affymetrix, Illumina [25844651] (imputed)	N
614	chr6_dbb_hap3	3863342	3863343	rs9271401	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs9271401-G	0.245	9E-21	(Complement C4, C4A.C4B.4481.34.2)	0.28	[0.22-0.34] unit decrease	Affymetrix [10572788] (imputed)	N
614	chr6_dbb_hap3	3863342	3863343	rs9271401	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs9271401-G	0.245	5E-21	(cAMP-specific 3',5'-cyclic phosphodiesterase 4D, PDE4D.5255.22.3)	0.28	[0.22-0.34] unit decrease	Affymetrix [10572788] (imputed)	N
614	chr6_dbb_hap3	3863342	3863343	rs9271401	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs9271401-G	0.245	1E-24	(Glutamate receptor 4, GRIA4.10760.107.3)	0.3	[0.24-0.36] unit decrease	Affymetrix [10572788] (imputed)	N
614	chr6_dbb_hap3	3863405	3863406	rs9271406	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RPL30	5,357 Icelandic ancestry individuals	NA	6p21.32		rs9271406-G	0.4339	4E-12		0.126569	[0.091-0.162] unit increase	Illumina [7506463] (imputed)	N
614	chr6_dbb_hap3	3863405	3863406	rs9271406	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	6p21.32		rs9271406-?	NR	2E-8		0.00512675	[0.0033-0.0069] unit decrease	NR [NR]	N
614	chr6_dbb_hap3	3863405	3863406	rs9271406	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs9271406-A	NR	2E-24		0.0290677	[0.023-0.035] unit decrease	Affymetrix [321169] (imputed)	N
614	chr6_dbb_hap3	3863405	3863406	rs9271406	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6p21.32	NR	rs9271406-G	0.497785	7E-25		0.024019469	[0.019-0.029] unit increase	Affymetrix [93095623] (imputed)	N
614	chr6_dbb_hap3	3863676	3863677	rs9271421	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	HLA-DQA1	rs9271421-C	0.861	5E-29	(GDH/6PGL endoplasmic bifunctional protein, H6PD.7161.25.3)	0.39	[0.31-0.47] unit decrease	Affymetrix [10572788] (imputed)	N
614	chr6_dbb_hap3	3863802	3863803	rs9271429	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	Systemic lupus erythematosus	1,639 East Asian ancestry cases, 2,410 East Asian ancestry controls	NA			rs9271429-G	NR	2E-11		0.2667	[0.19-0.34] unit decrease	Illumina [NR] (imputed)	N
614	chr6_dbb_hap3	3863848	3863849	rs9271431	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs9271431-A	NR	2E-14		0.0217731	[0.016-0.027] unit increase	Affymetrix [319769] (imputed)	N
614	chr6_dbb_hap3	3863848	3863849	rs9271431	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs9271431-A	NR	8E-14		0.0213218	[0.016-0.027] unit increase	Affymetrix [319769] (imputed)	N
614	chr6_dbb_hap3	3864445	3864446	rs9271469	34212547	An J	2021-07-01	Allergy Asthma Immunol Res	Genome-Wide Association Study of Korean Asthmatics: A Comparison With UK Asthmatics.	Adult asthma	1,386 Korean ancestry cases, 5,205 Korean ancestry controls	NA	6p21.32		rs9271469-C	0.28	4E-8		1.33	[1.2-1.48]	Affymetrix [4922160] (imputed)	N
614	chr6_dbb_hap3	3864528	3864529	rs76815088	35074870	Chia R	2022-02-01	Proc Natl Acad Sci U S A	Identification of genetic risk loci and prioritization of genes and pathways for myasthenia gravis: a genome-wide association study.	Myasthenia gravis	1,873 European ancestry cases, 36,370 European ancestry controls	7,412 European ancestry individuals	6p21.32		rs76815088-C	0.061	6E-16		0.42	[0.34-0.52]	Illumina [24006246] (imputed)	N
614	chr6_dbb_hap3	3865036	3865037	rs34104805	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.32	NR	rs34104805-?	NR	1E-13				Affymetrix [~ 8270000] (imputed)	N
614	chr6_dbb_hap3	3865036	3865037	rs34104805	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs34104805-?	NR	4E-17				Affymetrix [~ 8270000] (imputed)	N
614	chr6_dbb_hap3	3865085	3865086	rs35597309	25129146	Wu C	2014-08-17	Nat Genet	Joint analysis of three genome-wide association studies of esophageal squamous cell carcinoma in Chinese populations.	Esophageal squamous cell carcinoma	5,337 Han Chinese ancestry cases, 5,787 Han Chinese ancestry controls	9,654 Han Chinese ancestry cases, 10,058 Han Chinese ancestry  controls	6p21.32	HLA	rs35597309-A	0.072	1E-7		1.19	[1.12-1.27]	Affymetrix, Illumina [7556215] (imputed)	N
614	chr6_dbb_hap3	3865119	3865120	rs9271500	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	6p21.32		rs9271500-C	0.54239	1E-9		0.0250109	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3865182	3865183	rs73728611	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs73728611-A	0.878781	2E-8		0.0350323	[0.023-0.047] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3865182	3865183	rs73728611	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs73728611-A	0.878781	2E-8		0.0353342	[0.023-0.048] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3865182	3865183	rs73728611	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs73728611-A	0.878781	5E-9		0.0365405	[0.024-0.049] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3865182	3865183	rs73728611	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	6p21.32		rs73728611-A	0.878767	4E-9		0.0354428	[0.024-0.047] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3865182	3865183	rs73728611	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs73728611-A	0.878781	5E-8		0.0343432	[0.022-0.047] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3865182	3865183	rs73728611	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs73728611-A	0.878781	3E-8		0.0346994	[0.022-0.047] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3865182	3865183	rs73728611	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large VLDL particles	115,082 European ancestry individuals	NA	6p21.32		rs73728611-A	0.878781	3E-8		0.0346989	[0.022-0.047] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3865182	3865183	rs73728611	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large VLDL particles	115,082 European ancestry individuals	NA	6p21.32		rs73728611-A	0.878781	5E-8		0.0343334	[0.022-0.047] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3865182	3865183	rs73728611	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of chylomicrons and extremely large VLDL particles	115,082 European ancestry individuals	NA	6p21.32		rs73728611-A	0.878781	2E-8		0.0352602	[0.023-0.048] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3865182	3865183	rs73728611	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	6p21.32	HLA-DQA1	rs73728611-A	0.8765	1E-9		0.003	[0.0022-0.0038] unit increase	Affymetrix [15275733] (imputed)	N
614	chr6_dbb_hap3	3871846	3871847	rs9271536	33204752	Butler-Laporte G	2020-09-24	Open Forum Infect Dis	Genetic Determinants of Antibody-Mediated Immune Responses to Infectious Diseases Agents: A Genome-Wide and HLA Association Study.	Epstein-Barr virus VCA p18 antibody levels	8,518 White British ancestry individuals	NA	6p21.32	HLA-DQA1	rs9271536-A	0.180	7E-21		0.19	[0.15-0.23] unit increase	NR [25472218] (imputed)	N
614	chr6_dbb_hap3	3871846	3871847	rs9271536	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Terminally Differentiated CD4+ T cell %T cell	3,427 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9271536-T	0.77188	3E-18		0.291	[0.23-0.36] unit decrease	Illumina [18349913] (imputed)	N
614	chr6_dbb_hap3	3871846	3871847	rs9271536	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Terminally Differentiated CD4+ T cell %CD4+ T cell	3,427 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9271536-T	0.77188	8E-17		0.2806	[0.21-0.35] unit decrease	Illumina [18349913] (imputed)	N
614	chr6_dbb_hap3	3871846	3871847	rs9271536	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	SSC-A on CD4+ T cell	3,113 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9271536-T	0.76919	9E-14		0.2591	[0.19-0.33] unit decrease	Illumina [18030777] (imputed)	N
614	chr6_dbb_hap3	3871846	3871847	rs9271536	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Naive CD4+ T cell %CD4+ T cell	3,427 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9271536-T	0.77188	4E-12		0.2324	[0.17-0.3] unit increase	Illumina [18349913] (imputed)	N
614	chr6_dbb_hap3	3871846	3871847	rs9271536	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Effector Memory CD4+ T cell %T cell	3,427 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9271536-T	0.77188	3E-12		0.2368	[0.17-0.3] unit decrease	Illumina [18349913] (imputed)	N
614	chr6_dbb_hap3	3871850	3871851	rs9271537	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Terminally Differentiated CD4+ T cell Absolute Count	3,395 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9271537-T	0.6246700000000001	2E-9		0.1866	[0.13-0.25] unit decrease	Illumina [18332267] (imputed)	N
614	chr6_dbb_hap3	3871896	3871897	rs9271539	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p21.32	HLA-DRB1, HLA-DQA1	rs9271539-?	0.56	2E-7	(Turkish)	1.6393442	[1.35-1.96]	Illumina [up to 547389]	N
614	chr6_dbb_hap3	3872026	3872027	rs9271547	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	HLA-DQA2	rs9271547-A	0.551	6E-80	(HLA class II histocompatibility antigen, DQ alpha 2 chain, HLA.DQA2.7757.5.3)	0.45	[0.41-0.49] unit increase	Affymetrix [10572788] (imputed)	N
614	chr6_dbb_hap3	3872107	3872108	rs74995702	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs affecting bone structure and mineralization)	6,143 East Asian ancestry cases, 172,583 East Asian ancestry controls	NA	6p21.32		rs74995702-G	0.152630075	8E-16		0.21422668	[0.16-0.27] unit increase	Illumina [13429980] (imputed)	N
614	chr6_dbb_hap3	3872188	3872189	rs9271556	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	6p21.32		rs9271556-T	0.355911	1E-10		0.0285997	[0.02-0.037] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3872364	3872365	rs9271573	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small LDL	115,082 European ancestry individuals	NA	6p21.32		rs9271573-A	0.406337	9E-24		0.0408933	[0.033-0.049] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3872364	3872365	rs9271573	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium LDL	115,082 European ancestry individuals	NA	6p21.32		rs9271573-A	0.406337	6E-23		0.0404102	[0.032-0.048] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3872364	3872365	rs9271573	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large LDL	115,082 European ancestry individuals	NA	6p21.32		rs9271573-A	0.406337	6E-20		0.0376072	[0.03-0.046] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3872364	3872365	rs9271573	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in LDL	115,082 European ancestry individuals	NA	6p21.32		rs9271573-A	0.406337	1E-21		0.0393213	[0.031-0.047] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3872364	3872365	rs9271573	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to monounsaturated fatty acids	115,006 European ancestry individuals	NA	6p21.32		rs9271573-A	0.406357	1E-12		0.0285962	[0.021-0.036] unit increase	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3872364	3872365	rs9271573	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Monounsaturated fatty acid levels	115,006 European ancestry individuals	NA	6p21.32		rs9271573-A	0.406357	4E-25		0.0428694	[0.035-0.051] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3872364	3872365	rs9271573	32231244	Xie J	2020-03-30	Nat Commun	The genetic architecture of membranous nephropathy and its potential to improve non-invasive diagnosis.	Membranous nephropathy	2,150 European ancestry cases, 5,829 European ancestry controls, 1,612 East Asian ancestry cases, 1,970 East Asian ancestry controls	826 Chinese ancestry cases, 1,239 Chinese ancestry controls	6p21.32	HLA	rs9271573-A	NR	3E-154		2.41	[2.26-2.57]	Illumina [~ 7000000] (imputed)	N
614	chr6_dbb_hap3	3872364	3872365	rs9271573	32231244	Xie J	2020-03-30	Nat Commun	The genetic architecture of membranous nephropathy and its potential to improve non-invasive diagnosis.	Membranous nephropathy	2,150 European ancestry cases, 5,829 European ancestry controls	NA	6p21.32	HLA	rs9271573-A	0.44	2E-60		2.06	[1.89-2.25]	Illumina [~ 7000000] (imputed)	N
614	chr6_dbb_hap3	3872364	3872365	rs9271573	32231244	Xie J	2020-03-30	Nat Commun	The genetic architecture of membranous nephropathy and its potential to improve non-invasive diagnosis.	Membranous nephropathy	1,612 East Asian ancestry cases, 1,970 East Asian ancestry controls	NA	6p21.32	HLA	rs9271573-A	0.35	4E-102		2.97	[2.69-3.28]	Illumina [~ 7000000] (imputed)	N
614	chr6_dbb_hap3	3872364	3872365	rs9271573	28076899	Taylor KE	2017-01-11	Arthritis Rheumatol	Genome-Wide Association Analysis Reveals Genetic Heterogeneity of Sjogren's Syndrome According to Ancestry.	Sjogren's syndrome	585 European ancestry cases, up to 51 African ancestry cases, up to 164 Hispanic/Native american cases, up to 570 Asian ancestry cases, up to 59 cases, 1,546 European ancestry controls, 495 African ancestry controls, 237 Hispanic/Native American controls, 306 Asian ancestry controls, 148 controls.	NA	6p21.32	HLA-DQA1, HLA-DQB1, HLA-DRB1	rs9271573-?		3E-42		2.02	[1.82-2.23]	Illumina [1444884]	N
614	chr6_dbb_hap3	3872364	3872365	rs9271573	28076899	Taylor KE	2017-01-11	Arthritis Rheumatol	Genome-Wide Association Analysis Reveals Genetic Heterogeneity of Sjogren's Syndrome According to Ancestry.	Sjogren's syndrome	585 European ancestry cases, 1,546 European ancestry controls	NA	6p21.32	HLA-DQA1, HLA-DQB1, HLA-DRB1, HLA-DQA2	rs9271573-?		3E-34		2.29	[2.01-2.62]	Illumina [1444884]	N
614	chr6_dbb_hap3	3872486	3872487	rs2395225	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs2395225-C	NR	3E-11		0.0204906	[0.014-0.027] unit decrease	Affymetrix [321169] (imputed)	N
614	chr6_dbb_hap3	3872497	3872498	rs9271578	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs9271578-A	NR	2E-24		0.0287397	[0.023-0.034] unit decrease	Affymetrix [319769] (imputed)	N
614	chr6_dbb_hap3	3872497	3872498	rs9271578	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs9271578-A	NR	3E-23		0.0280541	[0.023-0.034] unit decrease	Affymetrix [319769] (imputed)	N
614	chr6_dbb_hap3	3872497	3872498	rs9271578	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	6p21.32		rs9271578-T	0.501806	3E-49		0.037933793	[0.033-0.043] unit increase	Affymetrix [93095623] (imputed)	N
614	chr6_dbb_hap3	3872499	3872500	rs9271579	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic sinusitis	7,529 European ancestry cases, 444,966 European ancestry controls, 4,617 East Asian ancestry cases, 152,226 East Asian ancestry controls	NA	6p21.32		rs9271579-A	NR	4E-36		0.1984	[0.17-0.23] unit increase	Affymetrix, Illumina [25838895] (imputed)	N
614	chr6_dbb_hap3	3872503	3872504	rs9271580	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Nasal polyps	5,093 European ancestry cases, 444,966 European ancestry controls, 160 East Asian ancestry cases, 151,846 East Asian ancestry controls	NA	6p21.32		rs9271580-G	NR	2E-40		0.352	[0.3-0.4] unit increase	Affymetrix, Illumina [25837843] (imputed)	N
614	chr6_dbb_hap3	3872584	3872585	rs17533090	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs17533090-T	0.22	5E-9		4.5	[3.42-5.91]	Illumina [NR] (imputed)	N
614	chr6_dbb_hap3	3872597	3872598	rs35062987	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	6p21.32	intergenic	rs35062987-T	0.2102	2E-39		0.0418	[0.036-0.048] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
614	chr6_dbb_hap3	3872630	3872631	rs34831921	32678081	Timmers PRHJ	2020-07-16	Nat Commun	Multivariate genomic scan implicates novel loci and haem metabolism in human ageing.	Aging traits (healthspan, parental lifespan or longevity) (multivariate analysis)	at least 837,415 European ancestry individuals	NA	6p21.32	HLA-DRB1, HLA-DQA1	rs34831921-A	0.1	6E-13				NR [7320282]	N
614	chr6_dbb_hap3	3872630	3872631	rs34831921	29030599	Joshi PK	2017-10-13	Nat Commun	Genome-wide meta-analysis associates HLA-DQA1/DRB1 and LPA and lifestyle factors with human longevity.	Parental lifespan	up to 586,626 European ancestry individuals, up to 19,433 African ancestry individuals	NA	6p21.32	HLA-DQA1, HLA-DRB1	rs34831921-A	0.09	4E-8	(EA)	0.6	years increase	Affymetrix, Illumina [at least 13643373] (imputed)	N
614	chr6_dbb_hap3	3872745	3872746	rs9271585	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	6p21.32	HLA-DQA1	rs9271585-A	0.4121	3E-7	(East Asian)	0.03	[0.019-0.041] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
614	chr6_dbb_hap3	3872745	3872746	rs9271585	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	6p21.32	HLA-DQA1	rs9271585-A	0.3329	7E-12		0.0249	[0.018-0.032] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
614	chr6_dbb_hap3	3872745	3872746	rs9271585	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	6p21.32	NR	rs9271585-A	0.3502	8E-8	(men)	0.0311	[0.02-0.042] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
614	chr6_dbb_hap3	3872765	3872766	rs9271586	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.32		rs9271586-G	0.495	6E-115				Affymetrix [10369434] (imputed)	N
614	chr6_dbb_hap3	3872791	3872792	rs3129763	21779181	Gorlova O	2011-07-14	PLoS Genet	Identification of novel genetic markers associated with clinical phenotypes of systemic sclerosis through a genome-wide association strategy.	Systemic sclerosis	2,296 European ancestry cases, 5,172 European ancestry controls	3,175 European ancestry cases, 4,210 European ancestry controls	6p21.32	HLA-DRB1, HLA-DQA1	rs3129763-?	0.25	1E-11	(ATA positive)	1.65	[1.42-1.91]	Illumina [NR] (imputed)	N
614	chr6_dbb_hap3	3872819	3872820	rs9271588	31879220	Lin GW	2019-12-23	Lancet Oncol	Genetic risk of extranodal natural killer T-cell lymphoma: a genome-wide association study in multiple populations.	Extranodal natural killer T-cell lymphoma (nasal type)	700 Han Chinese ancestry cases, 7,752 Han Chinese ancestry controls	717 East Asian ancestry cases, 12,650 East Asian ancestry controls	6p21.32	HLA-DRB1	rs9271588-C	0.4	9E-26		1.53	[1.41-1.65]	Illumina [3892410] (imputed)	N
614	chr6_dbb_hap3	3872819	3872820	rs9271588	31301374	Noguchi E	2019-07-10	J Allergy Clin Immunol	HLA-DQ and RBFOX1 as susceptibility genes for an outbreak of hydrolyzed wheat allergy.	Hydrolysed wheat protein allergy	452 Japanese ancestry cases, 2,700 Japaneses ancestry controls	45 Japanese ancestry cases, 326 Japaneses ancestry controls	6p21.32	NR	rs9271588-G	0.523	1E-26		2.3	[1.98-2.70]	Illumina [6575663] (imputed)	N
614	chr6_dbb_hap3	3872819	3872820	rs9271588	31102405	Labreche K	2019-05-17	Neuro Oncol	A genome-wide association study identifies susceptibility loci for primary central nervous system lymphoma at 6p25.3 and 3p22.1: a LOC network study.	Primary central nervous system lymphoma	475 European ancestry cases, 1,134 European ancestry controls	NA	6p21.32	NR	rs9271588-?	NR	2E-6		1.45	[1.25-1.68]	Illumina [> 10000000] (imputed)	N
614	chr6_dbb_hap3	3872819	3872820	rs9271588	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	6p21.32	intergenic	rs9271588-C	0.5051	4E-66		0.06142442	[0.054-0.068] unit increase	Affymetrix [~ 2500000] (imputed)	N
614	chr6_dbb_hap3	3872819	3872820	rs9271588	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	6p21.32	intergenic	rs9271588-C	0.5051	2E-58		0.0576552	[0.051-0.065] unit increase	Affymetrix [~ 2500000] (imputed)	N
614	chr6_dbb_hap3	3872819	3872820	rs9271588	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	6p21.32	intergenic	rs9271588-C	0.5051	1E-58		0.05764791	[0.051-0.065] unit increase	Affymetrix [~ 2500000] (imputed)	N
614	chr6_dbb_hap3	3872819	3872820	rs9271588	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	6p21.32	intergenic	rs9271588-C	0.5051	9E-68		0.06247162	[0.055-0.07] unit increase	Affymetrix [~ 2500000] (imputed)	N
614	chr6_dbb_hap3	3872819	3872820	rs9271588	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	6p21.32	intergenic	rs9271588-C	0.5051	2E-66		0.06164672	[0.055-0.069] unit increase	Affymetrix [~ 2500000] (imputed)	N
614	chr6_dbb_hap3	3872819	3872820	rs9271588	24097066	Li Y	2013-10-06	Nat Genet	A genome-wide association study in Han Chinese identifies a susceptibility locus for primary Sjogren's syndrome at 7q11.23.	Sjogren's syndrome	542 Han Chinese ancestry cases, 1,050 Han Chinese ancestry controls	1,303 Han Chinese ancestry cases, 2,727 Han Chinese ancestry controls	6p21.32	HLA-DRB1, HLA-DQA1, c6orf10, BTNL2, HLA-DRA, HLA-DRB5, HLA-DRB6	rs9271588-T	0.532	9E-37		1.75	[1.59-1.89]	Affymetrix [556134]	N
614	chr6_dbb_hap3	3872924	3872925	rs17599077	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs17599077-C	0.19	2E-8		4.08	[3.13-5.32]	Illumina [NR] (imputed)	N
614	chr6_dbb_hap3	3873064	3873065	rs9271593	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs9271593-C	NR	4E-12		0.0198725	[0.014-0.025] unit increase	Affymetrix [321016] (imputed)	N
614	chr6_dbb_hap3	3873114	3873115	rs34967069	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Tumor necrosis factor receptor superfamily member 6 levels	21,758 European ancestry individuals	9,173 individuals	6p21.32		rs34967069-T	0.12	3E-20		0.1381	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
614	chr6_dbb_hap3	3873114	3873115	rs34967069	30642433	Timmers PR	2019-01-15	Elife	Genomics of 1 million parent lifespans implicates novel pathways and common diseases and distinguishes survival chances.	Parental lifespan	at least 500,193 European ancestry offspring	NA	6p21.32	HLA-DQA1	rs34967069-T	0.07	4E-9		0.5613	[0.37-0.75] years increase	NR [up to 9000000] (imputed)	N
614	chr6_dbb_hap3	3873157	3873158	rs9271597	30674883	Jin Y	2019-01-23	Nat Commun	Early-onset autoimmune vitiligo associated with an enhancer variant haplotype that upregulates class II HLA expression.	Vitiligo (late onset)	1,467 European ancestry cases, 19,156 European ancestry controls	977 European ancestry cases, 727 European ancestry controls	6p21.32	NR	rs9271597-A	NR	4E-34		1.63	[1.55-1.71]	NR [up to 494043] (imputed)	N
614	chr6_dbb_hap3	3873157	3873158	rs9271597	30674883	Jin Y	2019-01-23	Nat Commun	Early-onset autoimmune vitiligo associated with an enhancer variant haplotype that upregulates class II HLA expression.	Vitiligo (early onset)	704 European ancestry cases, 9,031 European ancestry controls	375 European ancestry cases, 1,455 European ancestry controls	6p21.32	NR	rs9271597-A	NR	2E-40		2.23	[2.11-2.35]	NR [up to 494043] (imputed)	N
614	chr6_dbb_hap3	3873157	3873158	rs9271597	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	Factor VIII levels	25,897 European ancestry individuals, 4,500 African American individuals, 773 Asian ancestry individuals, 1,440 Hispanic individuals	NA	6p21.32	HLA-DQA1	rs9271597-A	0.42	6E-6	(EA)	0.0137	[0.0084-0.019] unit decrease	Affymetrix, Illumina [13887196] (imputed)	N
614	chr6_dbb_hap3	3873157	3873158	rs9271597	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	Factor VIII levels	25,897 European ancestry individuals, 4,500 African American individuals, 773 Asian ancestry individuals, 1,440 Hispanic individuals	NA	6p21.32	HLA-DQA1	rs9271597-A	0.41	1E-8		0.0152	[0.0099-0.0205] unit decrease	Affymetrix, Illumina [13887196] (imputed)	N
614	chr6_dbb_hap3	3873157	3873158	rs9271597	27723757	Jin Y	2016-11-01	Nat Genet	Genome-wide association studies of autoimmune vitiligo identify 23 new risk loci and highlight key pathways and regulatory variants.	Vitiligo	2,853 European ancestry cases and 37,405 European ancestry controls	1,827 European ancestry cases and 2,181 European ancestry controls	6p21.32	HLA-DRB1, HLA-DQA1	rs9271597-A	0.4269	3E-89		1.772	NR	Illumina [8966411] (imputed)	N
614	chr6_dbb_hap3	3873297	3873298	rs3129765	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	FSC-A on CD4+ T cell	3,113 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs3129765-G	0.75653	1E-10		0.2158	[0.15-0.28] unit decrease	Illumina [18030777] (imputed)	N
614	chr6_dbb_hap3	3873317	3873318	rs9271605	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	6p21.32		rs9271605-A	0.35118	1E-6		0.034564	[0.021-0.049] unit increase	Affymetrix [15580782] (imputed)	N
614	chr6_dbb_hap3	3873338	3873339	rs112396255	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs112396255-G	0.22	5E-9		4.5	[3.42-5.91]	Illumina [NR] (imputed)	N
614	chr6_dbb_hap3	3873436	3873437	rs73728618	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs73728618-T	NR	6E-33		1.481	[1.389-1.58]	Affymetrix [7846216] (imputed)	N
614	chr6_dbb_hap3	3873457	3873458	rs9271608	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	up to 92,771 European ancestry males, up to 113,387 European ancestry females	NA	6p21.32	HLA-DQA1	rs9271608-G	0.22	2E-17		0.042	[0.032-0.052] unit increase	Affymetrix, Illumina, Perlegen [2437193] (imputed)	N
614	chr6_dbb_hap3	3873478	3873479	rs9271611	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	6p21.32	NR	rs9271611-G	0.41	5E-19		1.16	[1.12-1.2]	Illumina [8468885] (imputed)	N
614	chr6_dbb_hap3	3873478	3873479	rs9271611	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Keratinocyte cancer (MTAG)	at least 18,538 European ancestry cases, at least 340,302 European ancestry controls	NA	6p21.32	HLA-DQA1	rs9271611-G	0.379011	2E-22		1.09	[1.07-1.11]	Affymetrix [7600000] (imputed)	N
614	chr6_dbb_hap3	3873843	3873844	rs9271629	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Lymphocyte Absolute Count	3,653 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9271629-A	0.71717	2E-8		0.1945	[0.13-0.26] unit increase	Illumina [18427377] (imputed)	N
614	chr6_dbb_hap3	3874050	3874051	rs9271640	25616667	Goris A	2015-01-22	Brain	Genetic variants are major determinants of CSF antibody levels in multiple sclerosis.	Oligoclonal band status in multiple sclerosis	2,232 European ancestry OCB positive individuals, 275 European ancestry OCB negative individuals, 439 OCB positive individuals, 80 OCB negative individuals	3,026 OCB positive individuals, 452 OCB negative individuals	6p21.32	HLA-DRB1	rs9271640-A	NR	5E-12		1.56	[1.38-1.77]	NR [485522]	N
614	chr6_dbb_hap3	3874050	3874051	rs9271640	23472185	Mero IL	2013-03-05	PLoS One	Oligoclonal band status in Scandinavian multiple sclerosis patients is associated with specific genetic risk alleles.	Multiple sclerosis (OCB status)	1,367 European ancestry OCB positive cases, 161 European ancestry OCB negative cases, 428 European ancestry controls	NA	6p21.32	HLA-DQA1	rs9271640-?	NR	2E-20	(OCB positive vs. controls)	2.37	[1.97-2.84]	Illumina [495970]	N
614	chr6_dbb_hap3	3874069	3874070	rs9271642	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in IDL	115,082 European ancestry individuals	NA	6p21.32		rs9271642-A	0.407279	2E-21		0.0389581	[0.031-0.047] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3874069	3874070	rs9271642	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	6p21.32		rs9271642-A	0.407279	9E-12		0.028651	[0.02-0.037] unit increase	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3874069	3874070	rs9271642	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6p21.32	HLA-DQA1	rs9271642-G	0.59407	9E-33		0.032831848	[0.027-0.038] unit increase	Affymetrix [93095623] (imputed)	N
614	chr6_dbb_hap3	3874460	3874461	rs28421666	27436580	Cui Q	2016-07-19	Hum Mol Genet	An extended genome-wide association study identifies novel susceptibility loci for nasopharyngeal carcinoma.	Nasopharyngeal carcinoma	1,583 Southern Chinese ancestry cases, 2,979 Southern Chinese ancestry controls	5,463 Southern Chinese ancestry cases, 5,591 Southern Chinese ancestry controls	6p21.32	NR	rs28421666-?	0.87	1E-10		1.64	[1.43-1.92]	Illumina [463250]	N
614	chr6_dbb_hap3	3874460	3874461	rs28421666	20512145	Bei JX	2010-05-30	Nat Genet	A genome-wide association study of nasopharyngeal carcinoma identifies three new susceptibility loci.	Nasopharyngeal carcinoma	1,583 Chinese ancestry cases, 1,894 Chinese ancestry controls	3,507 Chinese ancestry cases, 3,063 Chinese ancestry controls, 284  Chinese ancestry trios	6p21.32	HLA-DQ, HLA-DR	rs28421666-?	0.88	2E-18		1.49	[1.37-1.64]	Illumina [464328]	N
614	chr6_dbb_hap3	3874516	3874517	rs566952760	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs566952760-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
614	chr6_dbb_hap3	3874519	3874520	rs28383322	29227965	Pilling LC	2017-12-01	Aging (Albany NY)	Human longevity: 25 genetic loci associated in 389,166 UK biobank participants.	Parental longevity (mother's attained age)	412,937 British ancestry individuals	NA	6p21.32	HLA-DQA1, HLA-DRB1	rs28383322-C	NR	4E-9				Affymetrix [11535925] (imputed)	N
614	chr6_dbb_hap3	3874519	3874520	rs28383322	29227965	Pilling LC	2017-12-01	Aging (Albany NY)	Human longevity: 25 genetic loci associated in 389,166 UK biobank participants.	Parental longevity (combined parental attained age, Martingale residuals)	389,166 British ancestry individuals	NA	6p21.32	HLA-DRB1, HLA-DQA1	rs28383322-C	0.783	5E-11		0.0182	[0.013-0.024] unit increase	Affymetrix [11535925] (imputed)	N
614	chr6_dbb_hap3	3874556	3874557	rs9271673	33143745	Andlauer TFM	2020-11-04	BMC Med	Treatment- and population-specific genetic risk factors for anti-drug antibodies against interferon-beta: a GWAS.	Neutralising antibody response to interferon beta therapy in multiple sclerosis (antibody titre; IFN?-1a subcutaneous)	up to 2,000 German and Swedish ancestry individuals	up to 757 German and Swedish ancestry individuals	6p21.32		rs9271673-C	NR	2E-28		0.37	[0.31-0.43] unit increase	Illumina [8550834] (imputed)	N
614	chr6_dbb_hap3	3874804	3874805	rs9271695	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	6p21.32	NR	rs9271695-G	0.8044	1E-13		1.09	[1.07-1.12]	Affymetrix, Illumina [16900397] (imputed)	N
614	chr6_dbb_hap3	3874868	3874869	rs35508382	31605138	Avitabile M	2019-09-07	Carcinogenesis	Neural crest-derived tumor neuroblastoma and melanoma share 1p13.2 as susceptibility locus that shows a long-range interaction with the SLC16A1 gene.	Neuroblastoma or malignant cutaneous melanoma	2,101 European ancestry neuroblastoma cases, 12,874 European ancestry malignant cutaneous melanoma cases, 27,405 European ancestry controls	2,039 European ancestry neuroblastoma cases, 508 European ancestry malignant cutaneous melanoma cases, 3,469 European ancestry controls	6p21.32	HLA-DRB1, HLA-DQA1	rs35508382-G	0.09124	2E-6		1.1408801	[1.08-1.20]	NR [NR] (imputed)	N
614	chr6_dbb_hap3	3874922	3874923	rs9271700	33143745	Andlauer TFM	2020-11-04	BMC Med	Treatment- and population-specific genetic risk factors for anti-drug antibodies against interferon-beta: a GWAS.	Neutralising antibody response to interferon beta therapy in multiple sclerosis (presence of antibodies; IFN?-1a subcutaneous)	up to 2,000 German and Swedish ancestry individuals	up to 757 German and Swedish ancestry individuals	6p21.32		rs9271700-G	0.42	5E-27		1.25	[1.01-1.49] unit increase	Illumina [8550834] (imputed)	N
614	chr6_dbb_hap3	3874923	3874924	rs9271701	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6p21.32	NR	rs9271701-T	0.1795	2E-17		1.067	[1.051-1.082]	Affymetrix [15688218] (imputed)	N
614	chr6_dbb_hap3	3874968	3874969	rs35324266	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Squamous cell carcinoma	9,674 European ancestry cases, 625,657 European ancestry controls	NA	6p21.32	HLA-DQA1	rs35324266-T	0.041654	4E-9		1.14	[1.10-1.18]	Affymetrix, Illumina [up to 9061544] (imputed)	N
614	chr6_dbb_hap3	3875189	3875190	rs9271718	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs9271718-T	NR	1E-18		0.0262825	[0.02-0.032] unit increase	Affymetrix [321169] (imputed)	N
614	chr6_dbb_hap3	3875243	3875244	rs9271721	33143745	Andlauer TFM	2020-11-04	BMC Med	Treatment- and population-specific genetic risk factors for anti-drug antibodies against interferon-beta: a GWAS.	Binding antibody response to interferon beta therapy in multiple sclerosis (antibody levels; IFN?-1a subcutaneous and intramuscular)	up to 2,000 German and Swedish ancestry individuals	up to 757 German and Swedish ancestry individuals	6p21.32		rs9271721-G	NR	5E-22		0.32949224	[0.26-0.4] unit increase	Illumina [8550834] (imputed)	N
614	chr6_dbb_hap3	3875332	3875333	rs9271730	33766948	Zhu Z	2021-03-25	Eur Respir J	A large-scale genome-wide association analysis of lung function in the Chinese population identifies novel loci and highlights shared genetic etiology with obesity.	Lung function (FVC) and body mass index	up to 100,285 Chinese ancestry individuals	up to 457,756 European ancestry individuals	6p21.32		rs9271730-G	NR	2E-14	(East Asian)			Affymetrix [NR] (imputed)	N
614	chr6_dbb_hap3	3875332	3875333	rs9271730	33766948	Zhu Z	2021-03-25	Eur Respir J	A large-scale genome-wide association analysis of lung function in the Chinese population identifies novel loci and highlights shared genetic etiology with obesity.	Lung function (FEV1) and body mass index	up to 100,285 Chinese ancestry individuals	up to 457,756 European ancestry individuals	6p21.32		rs9271730-G	NR	8E-15	(East Asian)			Affymetrix [NR] (imputed)	N
614	chr6_dbb_hap3	3875351	3875352	rs9271732	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs9271732-G	NR	3E-8		0.0190926	[0.012-0.026] unit decrease	Affymetrix [321169] (imputed)	N
614	chr6_dbb_hap3	3875401	3875402	rs116189786	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	6p21.32	HLA-DRB1, HLA-DQA1	rs116189786-A	NR	5E-33		1.26	[1.22-1.3]	Affymetrix [9000000] (imputed)	N
614	chr6_dbb_hap3	3875414	3875415	rs9271737	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p21.32	HLA-DQA1	rs9271737-C	0.503238	2E-34		0.036497757	[0.031-0.042] unit increase	Affymetrix [93095623] (imputed)	N
614	chr6_dbb_hap3	3875752	3875753	rs9271762	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs9271762-G	0.304	9E-18	(Complement C4, C4A.C4B.4481.34.2)	0.25	[0.19-0.31] unit increase	Affymetrix [10572788] (imputed)	N
614	chr6_dbb_hap3	3875763	3875764	rs28383323	34454985	Sliz E	2021-08-26	J Allergy Clin Immunol	Uniting biobank resources reveals novel genetic pathways modulating susceptibility for atopic dermatitis.	Atopic dermatitis	22,474 European ancestry cases, 774,187 European ancestry controls	NA	6p21.32	NR	rs28383323-a	0.2381	1E-13		0.89	[0.86-0.92]	Affymetrix, Illumina [16201029] (imputed)	N
614	chr6_dbb_hap3	3875827	3875828	rs34518860	32276964	Shete S	2020-04-10	Cancer Res	A genome-wide association study identifies two novel susceptible regions for squamous cell carcinoma of the head and neck.	Oropharynx cancer	1,144 European ancestry cases, 4,493 European ancestry controls	2,328 European ancestry cases, 3,232 European ancestry controls	6p21.32	HLA-DQA1	rs34518860-G	0.89	3E-17		1.6393442	[1.47-1.85]	Illumina [7858089] (imputed)	N
614	chr6_dbb_hap3	3875879	3875880	rs532322163	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Rheumatoid arthritis	5,348 East Asian ancestry cases, 173,268 East Asian ancestry controls	NA	6p21.32		rs532322163-T	0.133495442	2E-152		0.8641147	[0.8-0.93] unit increase	Illumina [13429970] (imputed)	N
614	chr6_dbb_hap3	3875912	3875913	rs9271768	33766948	Zhu Z	2021-03-25	Eur Respir J	A large-scale genome-wide association analysis of lung function in the Chinese population identifies novel loci and highlights shared genetic etiology with obesity.	Lung function (FEV1)	100,285 Chinese ancestry individuals	NA	6p21.32		rs9271768-A	0.61	4E-12		0.032	L increase	Affymetrix [NR] (imputed)	N
614	chr6_dbb_hap3	3875972	3875973	rs9271770	31089142	Law PJ	2019-05-14	Nat Commun	Association analyses identify 31 new risk loci for colorectal cancer susceptibility.	Colorectal cancer	31,197 European ancestry cases, 61,770 European ancestry controls	NA	6p21.32	NR	rs9271770-A	0.81	4E-8		1.08	[1.05-1.11]	Affymetrix, Illumina [> 10000000] (imputed)	N
614	chr6_dbb_hap3	3875999	3876000	rs9271772	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Naive CD4+ T cell Absolute Count	3,395 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9271772-A	0.75528	3E-13		0.2514	[0.18-0.32] unit increase	Illumina [18332267] (imputed)	N
614	chr6_dbb_hap3	3875999	3876000	rs9271772	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD127 on CD45RA+ CD4+ T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9271772-A	0.75569	2E-13		0.2608	[0.19-0.33] unit increase	Illumina [17954496] (imputed)	N
614	chr6_dbb_hap3	3876033	3876034	rs9271774	28566273	Scott RA	2017-05-31	Diabetes	An Expanded Genome-Wide Association Study of Type 2 Diabetes in Europeans.	Type 2 diabetes	up to 26,676 European ancestry cases, up to 132,532 European ancestry controls	14,545 European ancestry cases, 38,994 European ancestry controls	6p21.32	HLA-DQA1	rs9271774-C	0.74	1E-9		1.09	[1.06-1.12]	Affymetrix, Illumina [at least 11579618] (imputed)	N
614	chr6_dbb_hap3	3876108	3876109	rs114741460	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	6p21.32		rs114741460-C	0.953428	2E-13		0.0731865	[0.054-0.093] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3876108	3876109	rs114741460	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	6p21.32		rs114741460-C	0.953428	3E-8		0.051812	[0.034-0.07] unit increase	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3876108	3876109	rs114741460	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in IDL	115,082 European ancestry individuals	NA	6p21.32		rs114741460-C	0.953428	6E-14		0.0768716	[0.057-0.097] unit increase	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3876108	3876109	rs114741460	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	6p21.32		rs114741460-C	0.953428	4E-13		0.0724454	[0.053-0.092] unit increase	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3876108	3876109	rs114741460	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	6p21.32		rs114741460-C	0.953428	1E-14		0.078791	[0.059-0.099] unit increase	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3876388	3876389	rs116352702	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs116352702-A	0.954	8E-18	(conditional)	0.543	[0.4-0.68]	Illumina [11270530] (imputed)	N
614	chr6_dbb_hap3	3876826	3876827	rs3104389	32769997	Zhou W	2020-08-07	Nat Commun	GWAS of thyroid stimulating hormone highlights pleiotropic effects and inverse association with thyroid cancer.	Thyroid stimulating hormone levels	119,715 European ancestry individuals	NA	6p21.32	HLA-DRB1, HLA-DQA1	rs3104389-A	0.424293733420786	6E-12		0.0623	[0.045-0.08] SD increase	Illumina [22400000] (imputed)	N
614	chr6_dbb_hap3	3876846	3876847	rs9271853	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C11orf87	5,363 Icelandic ancestry individuals	NA	6p21.32		rs9271853-T	0.3105	7E-12		0.135762	[0.097-0.175] unit decrease	Illumina [7506463] (imputed)	N
614	chr6_dbb_hap3	3876952	3876953	rs9271858	23291585	Fakiola M	2013-01-06	Nat Genet	Common variants in the HLA-DRB1-HLA-DQA1 HLA class II region are associated with susceptibility to visceral leishmaniasis.	Leishmaniasis (visceral)	989 Indian ancestry cases, 1,089 Indian ancestry controls, 357 Brazilian ancestry cases, 1,613 Brazilian ancestry unaffected relatives	951 Indian ancestry cases, 990 Indian ancestry controls	6p21.32	HLA, HLA-DRB1, HLA-DQA1	rs9271858-G	0.39	3E-17		1.41	[1.30-1.52]	Illumina [521134]	N
614	chr6_dbb_hap3	3877005	3877006	rs28362132	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CCL19	5,367 Icelandic ancestry individuals	NA	6p21.32		rs28362132-T	0.0511	8E-36		0.540362	[0.46-0.63] unit increase	Illumina [7506463] (imputed)	N
614	chr6_dbb_hap3	3877327	3877328	rs9271880	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs9271880-C	NR	2E-10		0.0194381	[0.013-0.025] unit decrease	Affymetrix [319769] (imputed)	N
614	chr6_dbb_hap3	3877327	3877328	rs9271880	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs9271880-C	NR	5E-10		0.0190783	[0.013-0.025] unit decrease	Affymetrix [319769] (imputed)	N
614	chr6_dbb_hap3	3878271	3878272	rs9271925	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	6p21.32	HLA-DQA1	rs9271925-G	0.3014	3E-9		0.0266219	[0.018-0.035] unit decrease	Affymetrix [~ 2500000] (imputed)	N
614	chr6_dbb_hap3	3878455	3878455	rs9281971	33143745	Andlauer TFM	2020-11-04	BMC Med	Treatment- and population-specific genetic risk factors for anti-drug antibodies against interferon-beta: a GWAS.	Neutralising antibody response to interferon beta therapy in multiple sclerosis (presence of antibodies; all treatment preparations)	up to 2,000 German and Swedish ancestry individuals	up to 757 German and Swedish ancestry individuals	6p21.32		rs9281971-TTTTTTT	0.36	2E-17		0.6	[-0.46--0.74] unit decrease	Illumina [8550834] (imputed)	N
614	chr6_dbb_hap3	3878455	3878455	rs9281971	33143745	Andlauer TFM	2020-11-04	BMC Med	Treatment- and population-specific genetic risk factors for anti-drug antibodies against interferon-beta: a GWAS.	Neutralising antibody response to interferon beta therapy in multiple sclerosis (antibody titre; all treatment preparations)	up to 2,000 German and Swedish ancestry individuals	up to 757 German and Swedish ancestry individuals	6p21.32		rs9281971-TTTTTTT	NR	2E-17		0.16	[-0.12--0.2] unit decrease	Illumina [8550834] (imputed)	N
614	chr6_dbb_hap3	3878750	3878751	rs3129769	26272072	Jiang X	2015-08-13	Rheumatology (Oxford)	An Immunochip-based interaction study of contrasting interaction effects with smoking in ACPA-positive versus ACPA-negative rheumatoid arthritis.	ACPA-positive rheumatoid arthritis (smoking interaction)	340 European ancestry never-smoker cases, 493 European ancestry ever-smoker cases, 746 European ancestry never-smoker controls, 994 European ancestry ever-smoker controls	187 European ancestry never-smoker cases, 421 European ancestry ever-smoker cases, 461 European ancestry never-smoker controls, 447 European ancestry ever-smoker controls	6p21.32	NR	rs3129769-?	NR	3E-11	(adjusted for HLA shared epitope)	1.724138	[1.33-2.44]	Illumina [133648] (imputed)	N
614	chr6_dbb_hap3	3878816	3878817	rs13211653	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total esterified cholesterol levels	115,082 European ancestry individuals	NA	6p21.32		rs13211653-A	0.854201	3E-14		0.0430803	[0.032-0.054] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3878816	3878817	rs13211653	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol levels	115,082 European ancestry individuals	NA	6p21.32		rs13211653-A	0.854201	4E-15		0.0445562	[0.033-0.056] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3878816	3878817	rs13211653	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Sphingomyelin levels	115,006 European ancestry individuals	NA	6p21.32		rs13211653-A	0.854236	6E-9		0.0319032	[0.021-0.043] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3878823	3878824	rs9271947	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	6p21.32		rs9271947-T	NR	5E-12		0.0142	[0.01-0.018] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
614	chr6_dbb_hap3	3879068	3879069	rs114798579	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	6p21.32	NR	rs114798579-?	NR	7E-19	(conditional)			Affymetrix [15688218] (imputed)	N
614	chr6_dbb_hap3	3879162	3879163	rs140145058	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large LDL	115,082 European ancestry individuals	NA	6p21.32		rs140145058-A	0.864668	1E-15		0.0486929	[0.037-0.061] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3879162	3879163	rs140145058	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	LDL cholesterol levels	115,082 European ancestry individuals	NA	6p21.32		rs140145058-A	0.864668	7E-16		0.0494415	[0.037-0.061] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3879162	3879163	rs140145058	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large LDL	115,082 European ancestry individuals	NA	6p21.32		rs140145058-A	0.864668	1E-15		0.048909	[0.037-0.061] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3879162	3879163	rs140145058	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large LDL	115,082 European ancestry individuals	NA	6p21.32		rs140145058-A	0.864668	2E-15		0.0482138	[0.036-0.06] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3879755	3879756	rs146668528	29785011	Zhu Z	2018-05-21	Nat Genet	A genome-wide cross-trait analysis from UK Biobank highlights the shared genetic architecture of asthma and allergic diseases.	Allergic disease (asthma, hay fever or eczema)	25,685 European ancestry allergic diseases cases, 76,768 European ancestry controls	NA	6p21.32	HLA-DQA1	rs146668528-?	NR	5E-12		1.1904762	[1.12-1.25]	Affymetrix [74888535] (imputed)	N
614	chr6_dbb_hap3	3879817	3879818	rs1281943	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs1281943-C	NR	2E-10		0.0328506	[0.023-0.043] unit increase	Affymetrix [321169] (imputed)	N
614	chr6_dbb_hap3	3880788	3880789	rs9461780	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	6p21.32	HLA-DQA1	rs9461780-T	0.075286	3E-15		0.033892684	[0.025-0.042] unit increase	Affymetrix [93095623] (imputed)	N
614	chr6_dbb_hap3	3880798	3880799	rs9272050	33794208	Bowden SJ	2021-04-01	Lancet Oncol	Genetic variation in cervical preinvasive and invasive disease: a genome-wide association study.	Cervical intraepithelial neoplasia grade 3 and invasive cervical cancer	764 European ancestry invasive cervical cancer cases, 4,005 European ancestry cervical intraepithelial neoplasia grade 3 cases, 145,545 European ancestry controls	NA	6p21.32	HLA-DQA1	rs9272050-?	NR	3E-28		1.27	[1.21-1.32]	Affymetrix [9600464] (imputed)	N
614	chr6_dbb_hap3	3880798	3880799	rs9272050	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cervical cancer	6,563 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs9272050-G	NR	1E-39		1.267	NR	Affymetrix [7846216] (imputed)	N
614	chr6_dbb_hap3	3880798	3880799	rs9272050	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p21.32	HLA-DRB1	rs9272050-G	0.38	1E-30		1.19	[1.17-1.21] unit increase	Illumina [at least 560000] (imputed)	N
614	chr6_dbb_hap3	3881214	3881215	rs9272071	33143745	Andlauer TFM	2020-11-04	BMC Med	Treatment- and population-specific genetic risk factors for anti-drug antibodies against interferon-beta: a GWAS.	Binding antibody response to interferon beta therapy in multiple sclerosis (antibody levels; all treatment preparations)	up to 2,000 German and Swedish ancestry individuals	up to 757 German and Swedish ancestry individuals	6p21.32		rs9272071-C	0.32	5E-18		0.22615278	[-0.17--0.28] unit decrease	Illumina [8550834] (imputed)	N
614	chr6_dbb_hap3	3881237	3881238	rs77559661	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	6p21.32		rs77559661-T	NR	4E-30		0.0301	[0.025-0.035] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
614	chr6_dbb_hap3	3881720	3881721	rs9272105	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	6p21.32	NR	rs9272105-?	NR	5E-12				Affymetrix [~ 8270000] (imputed)	N
614	chr6_dbb_hap3	3881720	3881721	rs9272105	22807686	Li S	2012-07-12	PLoS Genet	GWAS identifies novel susceptibility loci on 6p21.32 and 21q21.3 for hepatocellular carcinoma in chronic hepatitis B virus carriers.	Hepatocellular carcinoma	1,538 Han Chinese ancestry HBV-positive HCC cases, 1,465 Han Chinese ancestry chronic HBV carriers	4,431 Han Chinese ancestry HBV-positive HCC cases, 4,725 Han Chinese ancestry chronic HBV carriers	6p21.32	HLA-DRB1, HLA-DQA1	rs9272105-A	0.45	5E-22		1.28	[1.22-1.35]	NR [523663]	N
614	chr6_dbb_hap3	3881720	3881721	rs9272105	21502966	Weber F	2011-04-19	Pharmacogenomics J	Single-nucleotide polymorphisms in HLA- and non-HLA genes associated with the development of antibodies to interferon-? therapy in multiple sclerosis patients.	Response to interferon beta therapy	178 European ancestry antibody-positive individuals, 184 European ancestry antibody-negative individuals	350 European ancestry antibody-positive individuals, 468 European ancestry antibody-negative individuals	6p21.32	HLA-DRB1, HLA-DQA1	rs9272105-A	0.44	4E-10		0.26	[NR] unit increase	Illumina [~ 317000]	N
614	chr6_dbb_hap3	3881724	3881725	rs3104376	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	6p21.32	Intergenic	rs3104376-T	NR	2E-28		0.0514741	[0.042-0.061] unit increase	Illumina [13520550] (imputed)	N
614	chr6_dbb_hap3	3881778	3881779	rs35242582	28029757	Merkel PA	2016-12-28	Arthritis Rheumatol	Identification of Functional and Expression Polymorphisms Associated With Risk for Antineutrophil Cytoplasmic Autoantibody-Associated Vasculitis.	Antineutrophil cytoplasmic antibody-associated vasculitis	1,015 European ancestry granulomatosis with polyangiitis cases, 206 European ancestry microscopic polyangiitis cases, 3,258 European ancestry controls.	541 European ancestry granulomatosis with polyangiitis cases, 30 European ancestry microscopic polyangiitis cases, 1,465 European ancestry controls.	6p21.32	HLA-DQA1	rs35242582-A	0.74	6E-23		1.6	1.46-1.76	Affymetrix [at least 333035] (imputed)	N
614	chr6_dbb_hap3	3882096	3882097	rs3104373	27386562	Andlauer TF	2016-06-17	Sci Adv	Novel multiple sclerosis susceptibility loci implicated in epigenetic regulation.	Multiple sclerosis	4,888 German ancestry cases, 10,395 German ancestry controls	2,903 Sardinian ancestry cases, 3,323 Sardinian ancestry controls	6p21.32	HLA-DRB1	rs3104373-T		1E-234		2.9	[2.72-3.09]	Illumina [at least 8143088] (imputed)	N
614	chr6_dbb_hap3	3882125	3882126	rs9272116	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Creatinine levels	110,051 European ancestry individuals	NA	6p21.32		rs9272116-T	0.506915	1E-15		0.0282801	[0.021-0.035] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3882306	3882307	rs13214992	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	6p21.32	intergenic	rs13214992-A	0.0562	3E-29		0.1055	[0.087-0.124] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
614	chr6_dbb_hap3	3882392	3882393	rs9272131	30450575	Hojfeldt SG	2018-11-18	Br J Haematol	Genetic predisposition to PEG-asparaginase hypersensitivity in children treated according to NOPHO ALL2008.	PEG-asparaginase hypersensitivity without enzyme activity in childhood acute lymphoblastic leukaemia	59 European ancestry cases, 772 European ancestry controls	NA	6p21.32	HLA-DQA1, HLA-DQB1, HLA-DRB1	rs9272131-T	0.11	9E-6		3.01	[1.85-4.91]	Illumina [NR]	N
614	chr6_dbb_hap3	3882524	3882525	rs9272143	28806749	Leo PJ	2017-08-14	PLoS Genet	Defining the genetic susceptibility to cervical neoplasia-A genome-wide association study.	Cervical cancer	2,866 European ancestry cases, 6,481 European ancestry controls	NA	6p21.32	HLA-DRB1	rs9272143-?	NR	5E-15		1.3513513	[NR]	Illumina [10863230] (imputed)	N
614	chr6_dbb_hap3	3882524	3882525	rs9272143	23482656	Chen D	2013-03-12	J Natl Cancer Inst	Genome-wide association study of susceptibility loci for cervical cancer.	Cervical cancer	1,034 European ancestry cases, 3,948 European ancestry controls	1,140 European ancestry cases, 1,058 European ancestry controls	6p21.32	HLA-DRB1, HLA-DQA1	rs9272143-?	NR	3E-22		1.49	[1.37-1.61]	Illumina [632668]	N
614	chr6_dbb_hap3	3882740	3882741	rs9272154	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p21.32	NR	rs9272154-?	NR	9E-12		0.0937	[0.067-0.121] unit increase	Illumina [at least 560000] (imputed)	N
614	chr6_dbb_hap3	3883008	3883009	rs72848251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs72848251-G	0.805325	4E-21		0.0493811	[0.039-0.06] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3883008	3883009	rs72848251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Remnant cholesterol (non-HDL, non-LDL -cholesterol)	115,082 European ancestry individuals	NA	6p21.32		rs72848251-G	0.805325	8E-20		0.0484938	[0.038-0.059] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3883008	3883009	rs72848251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of apolipoprotein B to apolipoprotein A1 levels	115,082 European ancestry individuals	NA	6p21.32		rs72848251-G	0.805325	6E-19		0.0468108	[0.036-0.057] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3883008	3883009	rs72848251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs72848251-G	0.805325	1E-22		0.0513513	[0.041-0.062] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3883008	3883009	rs72848251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs72848251-G	0.805325	2E-21		0.0496998	[0.039-0.06] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3883008	3883009	rs72848251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very small VLDL particles	115,082 European ancestry individuals	NA	6p21.32		rs72848251-G	0.805325	2E-20		0.048766	[0.038-0.059] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3883008	3883009	rs72848251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large LDL particles	115,082 European ancestry individuals	NA	6p21.32		rs72848251-G	0.805325	2E-23		0.0532642	[0.043-0.064] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3883008	3883009	rs72848251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of LDL particles	115,082 European ancestry individuals	NA	6p21.32		rs72848251-G	0.805325	2E-22		0.0522239	[0.042-0.063] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3883008	3883009	rs72848251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in VLDL	115,082 European ancestry individuals	NA	6p21.32		rs72848251-G	0.805325	4E-26		0.0566218	[0.046-0.067] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3883008	3883009	rs72848251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs72848251-G	0.805325	1E-17		0.0444632	[0.034-0.055] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3883008	3883009	rs72848251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	6p21.32		rs72848251-G	0.805325	4E-24		0.0541049	[0.044-0.065] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3883008	3883009	rs72848251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein B levels	115,082 European ancestry individuals	NA	6p21.32		rs72848251-G	0.805325	4E-22		0.0517157	[0.041-0.062] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3883008	3883009	rs72848251	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	6p21.32	HLA-DQA1	rs72848251-G	0.804518	1E-38		0.0349134	[0.03-0.04] unit decrease	Affymetrix [NR] (imputed)	N
614	chr6_dbb_hap3	3883527	3883528	rs147841808	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in IDL	115,082 European ancestry individuals	NA	6p21.32		rs147841808-C	0.867699	2E-14		0.0459272	[0.034-0.058] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3883527	3883528	rs147841808	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large LDL	115,082 European ancestry individuals	NA	6p21.32		rs147841808-C	0.867699	2E-15		0.0492534	[0.037-0.061] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3883527	3883528	rs147841808	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in IDL	115,082 European ancestry individuals	NA	6p21.32		rs147841808-C	0.867699	8E-17		0.0499703	[0.038-0.062] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3883527	3883528	rs147841808	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small LDL	115,082 European ancestry individuals	NA	6p21.32		rs147841808-C	0.867699	2E-13		0.0454527	[0.033-0.058] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3883527	3883528	rs147841808	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large LDL	115,082 European ancestry individuals	NA	6p21.32		rs147841808-C	0.867699	3E-14		0.0463596	[0.034-0.058] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3883527	3883528	rs147841808	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in LDL	115,082 European ancestry individuals	NA	6p21.32		rs147841808-C	0.867699	3E-14		0.0468543	[0.035-0.059] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3883527	3883528	rs147841808	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in IDL	115,082 European ancestry individuals	NA	6p21.32		rs147841808-C	0.867699	4E-14		0.0455951	[0.034-0.057] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3883527	3883528	rs147841808	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Clinical LDL cholesterol levels	115,082 European ancestry individuals	NA	6p21.32		rs147841808-C	0.867699	4E-16		0.0503325	[0.038-0.062] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3883527	3883528	rs147841808	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium VLDL	115,082 European ancestry individuals	NA	6p21.32		rs147841808-C	0.867699	7E-22		0.0592176	[0.047-0.071] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3883527	3883528	rs147841808	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in IDL	115,082 European ancestry individuals	NA	6p21.32		rs147841808-C	0.867699	2E-12		0.0422918	[0.031-0.054] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3883527	3883528	rs147841808	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in IDL	115,082 European ancestry individuals	NA	6p21.32		rs147841808-C	0.867699	5E-13		0.0434275	[0.032-0.055] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3883673	3883674	rs553685714	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	6p21.32	HLA-DQA1	rs553685714-G	0.00566900000000004	5E-30		0.24839339	[0.21-0.29] unit increase	Affymetrix [93095623] (imputed)	N
614	chr6_dbb_hap3	3883673	3883674	rs553685714	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	6p21.32	HLA-DQA1	rs553685714-G	0.005664	1E-34		0.2682929	[0.23-0.31] unit decrease	Affymetrix [93095623] (imputed)	N
614	chr6_dbb_hap3	3883859	3883860	rs3104371	34536413	Daya M	2021-09-15	J Allergy Clin Immunol	Multi-ethnic genome-wide and HLA association study of total serum IgE.	IgE levels	5,008 African American individuals, 12,908 European ancestry individuals, 3,985 Hispanic individuals	NA	6p21.32		rs3104371-G	0.17	4E-18				Affymetrix, Illumina [NR] (imputed)	N
614	chr6_dbb_hap3	3883991	3883992	rs9272219	32792643	Romero-Hidalgo S	2020-08-13	Sci Rep	Native American ancestry significantly contributes to neuromyelitis optica susceptibility in the admixed Mexican population.	Neuromyelitis optica	164 Mexican cases, 1,208 Mexican controls	NA	6p21.32	HLA-DQA1	rs9272219-A	0.42	8E-10		2.48	[1.86-3.32]	Illumina [252805]	N
614	chr6_dbb_hap3	3883991	3883992	rs9272219	19571809	Shi J	2009-07-01	Nature	Common variants on chromosome 6p22.1 are associated with schizophrenia.	Schizophrenia	2,681 European ancestry cases, 2,653 European ancestry controls, 1,286 African American cases, 973 African American controls	5,327 European ancestry cases, 16,424 European ancestry controls	6p21.32	HLA-DQA1	rs9272219-G	0.72	7E-8	(EA)	1.14	[NR]	Affymetrix [up to 843798]	N
614	chr6_dbb_hap3	3884118	3884119	rs9272226	34212547	An J	2021-07-01	Allergy Asthma Immunol Res	Genome-Wide Association Study of Korean Asthmatics: A Comparison With UK Asthmatics.	Adult asthma	1,386 Korean ancestry cases, 5,205 Korean ancestry controls	NA	6p21.32		rs9272226-C	0.43	6E-7		1.27	[1.16-1.4]	Affymetrix [4922160] (imputed)	N
614	chr6_dbb_hap3	3884204	3884205	rs3104369	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CXCL2;CXCL3	5,366 Icelandic ancestry individuals	NA	6p21.32		rs3104369-T	0.3681	6E-26		0.203573	[0.17-0.24] unit increase	Illumina [7506463] (imputed)	N
614	chr6_dbb_hap3	3884204	3884205	rs3104369	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD45RA+ CD8+ T cell Absolute Count	3,395 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs3104369-C	0.7732	1E-9		0.1747	[0.12-0.23] unit increase	Illumina [18332267] (imputed)	N
614	chr6_dbb_hap3	3884204	3884205	rs3104369	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs3104369-?	NR	1E-11				Affymetrix [~ 8270000] (imputed)	N
614	chr6_dbb_hap3	3884204	3884205	rs3104369	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Adult onset asthma or type 2 diabetes	33,418 European ancestry asthma cases, 393,186 European ancestry asthma controls, 159,208 European ancestry diabetes cases and controls	NA	6p21.32	NR	rs3104369-?	NR	9E-15				Affymetrix [up to 8270000] (imputed)	N
614	chr6_dbb_hap3	3884205	3884206	rs17205170	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	6p21.32	HLA-DQA1	rs17205170-?	NR	1E-44		0.0464	[0.041-0.052] unit increase	Affymetrix [5701386] (imputed)	N
614	chr6_dbb_hap3	3884353	3884354	rs17205212	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	334,468 European ancestry, NR ancestry individuals	NA	6p21.32		rs17205212-?	NR	5E-8				Affymetrix [NR] (imputed)	N
614	chr6_dbb_hap3	3884388	3884388	rs139299944	33204752	Butler-Laporte G	2020-09-24	Open Forum Infect Dis	Genetic Determinants of Antibody-Mediated Immune Responses to Infectious Diseases Agents: A Genome-Wide and HLA Association Study.	Human herpes virus 7 U14 antibody levels	8,528 White British ancestry individuals	NA	6p21.32	HLA-DQA1	rs139299944-C	0.658	4E-12		0.11	[0.079-0.141] unit increase	NR [25472218] (imputed)	N
614	chr6_dbb_hap3	3884512	3884513	rs9272242	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4 on Effector Memory CD4+ T cell	2,912 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9272242-C	0.6302	4E-12		0.2215	[0.16-0.28] unit increase	Illumina [17945888] (imputed)	N
614	chr6_dbb_hap3	3884594	3884595	rs9272245	33794208	Bowden SJ	2021-04-01	Lancet Oncol	Genetic variation in cervical preinvasive and invasive disease: a genome-wide association study.	Cervical intraepithelial neoplasia grade 3	4,005 European ancestry cases, 145,545 European ancestry controls	NA	6p21.32	HLA-DQA1	rs9272245-?	NR	5E-12		1.44	[1.30-1.60]	Affymetrix [9600464] (imputed)	N
614	chr6_dbb_hap3	3884729	3884730	rs2040406	20453840	Sanna S	2010-05-09	Nat Genet	Variants within the immunoregulatory CBLB gene are associated with multiple sclerosis.	Multiple sclerosis	882 Sardinian cases, 872 Sardinian controls	1,775 Sardinian cases, 2,005 Sardinian controls	6p21.32	HLA-DQB1, HLA-DRB	rs2040406-G	0.26	1E-20		2.05	[NR]	Affymetrix [6607266] (imputed)	N
614	chr6_dbb_hap3	3884899	3884900	rs28393315	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	6p21.32		rs28393315-A	0.739	9E-22				Affymetrix [10369434] (imputed)	N
614	chr6_dbb_hap3	3885017	3885018	rs9272263	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DQA1	rs9272263-C	NR	2E-12		0.0278269	[0.02-0.036] unit decrease	Affymetrix [323858] (imputed)	N
614	chr6_dbb_hap3	3885017	3885018	rs9272263	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	HLA-DQA1	rs9272263-A	NR	6E-10		0.0226602	[0.015-0.03] unit decrease	Affymetrix [127266] (imputed)	N
614	chr6_dbb_hap3	3885017	3885018	rs9272263	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p21.32	HLA-DQA1	rs9272263-C	NR	2E-8		0.0221565	[0.014-0.03] unit decrease	Affymetrix [323858] (imputed)	N
614	chr6_dbb_hap3	3885043	3885044	rs62404084	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antihistamines for systemic use)	13,984 European ancestry cases, 137,652 European ancestry controls, 10,163 East Asian ancestry cases, 168,563 East Asian ancestry controls	NA	6p21.32		rs62404084-T	NR	5E-11		0.0852	[0.06-0.11] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
614	chr6_dbb_hap3	3885043	3885044	rs62404084	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6p21.32	NR	rs62404084-C	0.8069	1E-43		1.1116052	[1.1-1.13]	Affymetrix [15688218] (imputed)	N
614	chr6_dbb_hap3	3885207	3885208	rs3104367	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Asthma	28,399 European ancestry cases, 128,843 European ancestry controls	NA	6p21.32	HLA-DRB5, HLA-DQA1	rs3104367-?	NR	1E-40		1.1467891	[1.12-1.17]	Illumina [13747813] (imputed)	N
614	chr6_dbb_hap3	3885380	3885381	rs1391373	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs1391373-C	NR	2E-10		0.0185525	[0.013-0.024] unit decrease	Affymetrix [321016] (imputed)	N
614	chr6_dbb_hap3	3885515	3885516	rs1391371	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (glucocorticoids)	17,352 European ancestry cases, 188,348 European ancestry controls, 13,102 East Asian ancestry cases, 165,624 East Asian ancestry controls	NA	6p21.32		rs1391371-T	NR	1E-37		0.1229	[0.1-0.14] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
614	chr6_dbb_hap3	3885515	3885516	rs1391371	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (glucocorticoids)	17,352 European ancestry cases, 188,348 European ancestry controls	NA	6p21.32	HLA-DQA1	rs1391371-T	0.202145	2E-48		0.20412196	[0.18-0.23] unit increase	Affymetrix [7288503] (imputed)	N
614	chr6_dbb_hap3	3885515	3885516	rs1391371	30643255	Kristjansson RP	2019-01-14	Nat Genet	A loss-of-function variant in ALOX15 protects against nasal polyps and chronic rhinosinusitis.	Nasal polyps	86 European ancestry whole-genome sequenced cases, 4,280 European ancestry cases, 13,941 European ancestry whole-genome sequenced controls, 700,740 European ancestry controls	NA	6p21.32	HLA-DQA1	rs1391371-T	0.195	7E-49		1.47	[1.39-1.54]	Affymetrix, Illumina [up to 37123566] (imputed)	N
614	chr6_dbb_hap3	3885515	3885516	rs1391371	30643255	Kristjansson RP	2019-01-14	Nat Genet	A loss-of-function variant in ALOX15 protects against nasal polyps and chronic rhinosinusitis.	Chronic rhinosinusitis	251 European ancestry whole-genome sequenced cases, 5,357 European ancestry cases, 13,957 European ancestry whole-genome sequenced controls, 746,129 European ancestry controls	NA	6p21.32	HLA-DQA1	rs1391371-T	0.195	4E-15		1.22	(1.16-1.28)	Affymetrix, Illumina [up to 37123566] (imputed)	N
614	chr6_dbb_hap3	3885542	3885543	rs3129774	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	6p21.32		rs3129774-C	0.559887	9E-21		0.0390299	[0.031-0.047] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3885542	3885543	rs3129774	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs3129774-C	0.55995	2E-20		0.0386367	[0.03-0.047] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3885542	3885543	rs3129774	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6p21.32		rs3129774-C	0.55995	2E-20		0.0377974	[0.03-0.046] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3885542	3885543	rs3129774	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6p21.32		rs3129774-C	0.55995	7E-20		0.0378012	[0.03-0.046] unit increase	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3885542	3885543	rs3129774	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	6p21.32		rs3129774-C	0.559887	2E-21		0.0397338	[0.032-0.048] unit increase	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3885542	3885543	rs3129774	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6p21.32		rs3129774-C	0.55995	1E-18		0.0363057	[0.028-0.044] unit increase	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3885542	3885543	rs3129774	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	6p21.32		rs3129774-C	0.559887	1E-16		0.0342504	[0.026-0.042] unit increase	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3885542	3885543	rs3129774	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs3129774-C	0.55995	8E-20		0.0387931	[0.03-0.047] unit increase	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3885542	3885543	rs3129774	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6p21.32		rs3129774-C	0.55995	1E-19		0.0366269	[0.029-0.045] unit increase	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3885542	3885543	rs3129774	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	6p21.32		rs3129774-C	0.559954	9E-20		0.0375502	[0.029-0.046] unit increase	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3885542	3885543	rs3129774	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	6p21.32		rs3129774-C	0.559887	6E-19		0.0366323	[0.029-0.045] unit increase	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3885542	3885543	rs3129774	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs3129774-C	0.55995	8E-21		0.0392074	[0.031-0.047] unit increase	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3885542	3885543	rs3129774	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6p21.32		rs3129774-C	0.55995	6E-20		0.0370631	[0.029-0.045] unit increase	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3885542	3885543	rs3129774	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	6p21.32		rs3129774-C	0.559954	3E-17		0.0356128	[0.027-0.044] unit increase	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3885653	3885654	rs9272309	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	6p21.32	NR	rs9272309-A	0.620099	1E-19		0.0128993	[0.01-0.016] unit increase	Affymetrix [16578495] (imputed)	N
614	chr6_dbb_hap3	3886094	3886095	rs9272346	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	6p21.32	HLA-DQA1	rs9272346-A	0.61	2E-156				NR [> 9500000] (imputed)	N
614	chr6_dbb_hap3	3886094	3886095	rs9272346	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (childhood onset)	9,433 British ancestry cases, 318,237 British ancestry controls	NA	6p21.32	NR	rs9272346-A	0.59	4E-37		1.13		Affymetrix [10894596] (imputed)	N
614	chr6_dbb_hap3	3886094	3886095	rs9272346	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (age of onset)	37,846 British ancestry individuals	NA	6p21.32	NR	rs9272346-A	0.59	7E-8				Affymetrix [10894596] (imputed)	N
614	chr6_dbb_hap3	3886094	3886095	rs9272346	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (adult onset)	21,564 British ancestry cases, 318,237 British ancestry controls	NA	6p21.32	NR	rs9272346-A	0.59	2E-47		1.13		Affymetrix [10894596] (imputed)	N
614	chr6_dbb_hap3	3886094	3886095	rs9272346	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls, 2,149 African ancestry cases, 6,055 African ancestry controls, 1,239 Japanese ancestry cases, 3,976 Japanese ancestry controls, 606 Latino cases, 792 Latino controls	NA	6p21.32	HLA-DRB1, HLA-DQA1	rs9272346-A	0.56	6E-24		1.16	[1.12-1.19]	Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
614	chr6_dbb_hap3	3886094	3886095	rs9272346	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls	NA	6p21.32	HLA-DRB1, HLA-DQA1	rs9272346-A	0.56	2E-28		0.15	[0.13-0.17] unit increase	Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
614	chr6_dbb_hap3	3886094	3886095	rs9272346	27130862	Sarnowski C	2016-04-06	J Allergy Clin Immunol	Identification of a new locus at 16q12 associated with time to asthma onset.	Asthma (time to onset)	5,462 European ancestry cases, 8,424 European ancestry controls	NA	6p21.32	HLA-DQA1	rs9272346-A	0.59	2E-8		1.13	[1.08-1.17]	Illumina [2387926] (imputed)	N
614	chr6_dbb_hap3	3886094	3886095	rs9272346	23181788	Lasky-Su J	2012-12-04	Clin Exp Allergy	HLA-DQ strikes again: genome-wide association study further confirms HLA-DQ in the diagnosis of asthma among adults.	Asthma	Up to 1,238 European ancestry cases, up to 2,617 European ancestry controls	Up to 1,837 European ancestry cases, up to 3,803 European ancestry controls, up to 2,806 cases, up to 2,150 controls, up to 603 Costa Rican ancestry cases and their parents	6p21.32	HLA-DQA1	rs9272346-?	NR	2E-8	(Adult)			Affymetrix [455089]	N
614	chr6_dbb_hap3	3886094	3886095	rs9272346	18978792	Cooper JD	2008-11-02	Nat Genet	Meta-analysis of genome-wide association study data identifies additional type 1 diabetes risk loci.	Type 1 diabetes	3,561 European ancestry cases, 4,646 European ancestry controls	6,225 European ancestry cases, 6,946 European ancestry controls, 3,064 European ancestry trios from 2,828 families	6p21.32	HLA	rs9272346-G	NR	6E-129				Affymetrix [up to 335565]	N
614	chr6_dbb_hap3	3886094	3886095	rs9272346	17554300	Wellcome Trust Case Control Consortium	2007-06-07	Nature	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Type 1 diabetes	1,963 European ancestry cases, 2,938 European ancestry controls	(see Todd 2007)	6p21.32	MHC	rs9272346-G	0.61	5E-134		5.49	[4.83-6.24]	Affymetrix [469557]	N
614	chr6_dbb_hap3	3886376	3886377	rs9272371	32737300	Sallah N	2020-07-31	Nat Commun	Distinct genetic architectures and environmental factors associate with host response to the ?2-herpesvirus infections.	Anti-Epstein-Barr virus nuclear antigen (EBNA) IgG levels	4,365 Ugandan ancestry individuals	2,162  European ancestry individuals	6p21.32	HLA-DQA1	rs9272371-C	0.3	4E-44	(Ugandan)	0.36	[0.32-0.40] unit decrease	Illumina [14929118] (imputed)	N
614	chr6_dbb_hap3	3886376	3886377	rs9272371	29868224	Sallah N	2017-11-27	Glob Health Epidemiol Genom	Whole-genome association study of antibody response to Epstein-Barr virus in an African population: a pilot.	Epstein-Barr virus immune response (multivariate analysis)	1,473 Ugandan ancestry individuals	NA	6p21.32	HLA-DQA1	rs9272371-C	0.305	6E-21		0.36	[0.27-0.44] unit decrease	Illumina [~ 17000000] (imputed)	N
614	chr6_dbb_hap3	3886376	3886377	rs9272371	29868224	Sallah N	2017-11-27	Glob Health Epidemiol Genom	Whole-genome association study of antibody response to Epstein-Barr virus in an African population: a pilot.	Epstein Barr virus nuclear antigen 1 IgG seropositivity	1,201 Ugandan ancestry cases, 361 Ugandan ancestry controls	NA	6p21.32	HLA-DQA1	rs9272371-?	0.695	4E-10		1.12	[1.08-1.16]	Illumina [~ 17000000] (imputed)	N
614	chr6_dbb_hap3	3886376	3886377	rs9272371	29868224	Sallah N	2017-11-27	Glob Health Epidemiol Genom	Whole-genome association study of antibody response to Epstein-Barr virus in an African population: a pilot.	Epstein Barr virus nuclear antigen 1 IgG levels	1,473 Ugandan ancestry individuals, 2,162 European ancestry individuals	NA	6p21.32	HLA-DQA1	rs9272371-C	0.305	3E-17	(AA)	0.36	[0.26-0.42] unit decrease	Illumina [up to 17000000] (imputed)	N
614	chr6_dbb_hap3	3887227	3887228	rs9272451	33549134	Adolphe C	2021-02-06	Genome Med	Genetic and functional interaction network analysis reveals global enrichment of regulatory T cell genes influencing basal cell carcinoma susceptibility.	Basal cell carcinoma	17,416 European ancestry cases, 375,455 European ancestry controls	NA	6p21.32	HLA-DQA1	rs9272451-G	0.386296	4E-21		0.10671105	[0.085-0.129] unit decrease	Affymetrix [7260263] (imputed)	N
614	chr6_dbb_hap3	3887234	3887235	rs2213287	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	6p21.32		rs2213287-?	NR	5E-9		0.00544481	[0.0036-0.0073] unit decrease	NR [NR]	N
614	chr6_dbb_hap3	3887610	3887611	rs2187668	28008999	Ostrowski J	2016-12-23	Sci Rep	Genetic architecture differences between pediatric and adult-onset inflammatory bowel diseases in the Polish population.	Ulcerative colitis	269 Polish ancestry child cases, 259 Polish ancestry adult cases, 582 Polish ancestry controls	121 Polish ancestry child cases, 85 Polish ancestry adult cases, 352 Polish ancestry controls	6p21.32	HLA-DQA1	rs2187668-?		4E-6	(Adults)	2.21266	[1.54-3.12]	Illumina [2612357]	N
614	chr6_dbb_hap3	3887610	3887611	rs2187668	28008999	Ostrowski J	2016-12-23	Sci Rep	Genetic architecture differences between pediatric and adult-onset inflammatory bowel diseases in the Polish population.	Inflammatory bowel disease	622 Polish ancestry child cases, 496 Polish ancestry adult cases, 582 Polish ancestry controls	192 Polish ancestry child cases, 185 Polish ancestry adult cases, 352 Polish ancestry controls	6p21.32	HLA-DQA1	rs2187668-?	NR	2E-7	(Adult)	1.9647566	[1.52-2.56]	Illumina [2612357]	N
614	chr6_dbb_hap3	3887610	3887611	rs2187668	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Diastolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	6p21.32	BAT2, BAT5	rs2187668-T	0.126	4E-11		0.372	[0.26-0.48] mm Hg decrease	Affymetrix, Illumina, Perlegen [128272]	N
614	chr6_dbb_hap3	3887610	3887611	rs2187668	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Diastolic blood pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	6p21.32	HLA-DQB1	rs2187668-T	0.1281	8E-6		0.0258	unit decrease	Illumina [242296]	N
614	chr6_dbb_hap3	3887610	3887611	rs2187668	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p21.32	HLA-DQA1	rs2187668-A	0.359	5E-36		3.4	[2.24-5.17]	Illumina [118177]	N
614	chr6_dbb_hap3	3887610	3887611	rs2187668	26525574	Westerlind H	2015-11-02	Gut	Dense genotyping of immune-related loci identifies HLA variants associated with increased risk of collagenous colitis.	Collagenous colitis	247 European ancestry cases, 3969 European ancestry controls	67 European ancestry cases, 330 European ancestry controls	6p21.32	HLA	rs2187668-?	0.126	2E-11		2.06	[1.67-2.55]	Illumina [110634]	N
614	chr6_dbb_hap3	3887610	3887611	rs2187668	26316170	Demirci FY	2015-08-28	Arthritis Rheumatol	Identification of a New Susceptibility Locus for Systemic Lupus Erythematosus on Chromosome 12 in Individuals of European Ancestry.	Systemic lupus erythematosus	661 European ancestry cases, 487 European ancestry controls	4,467 European ancestry cases, 9,114 European ancestry controls	6p21.32	HLA-DQA1	rs2187668-?	NR	1E-9				Affymetrix [up to 700598]	N
614	chr6_dbb_hap3	3887610	3887611	rs2187668	25827949	Kunz M	2015-05-04	Exp Dermatol	Genome-wide association study identifies new susceptibility loci for cutaneous lupus erythematosus.	Cutaneous lupus erythematosus	151 European ancestry cases, 1,288 European ancestry controls	219 European ancestry cases, 262 European ancestry controls	6p21.32	HLA-DQA1	rs2187668-T	0.107	4E-10		2.93	[2.18-3.95]	Affymetrix [906600]	N
614	chr6_dbb_hap3	3887610	3887611	rs2187668	24768677	de Boer YS	2014-04-23	Gastroenterology	Genome-wide association study identifies variants associated with autoimmune hepatitis type 1.	Autoimmune hepatitis type-1	649 European ancestry cases, 13,436 European ancestry controls	451 European ancestry cases, 4,103 European ancestry controls	6p21.32	HLA-DQA1	rs2187668-?	0.15	2E-78		2.9	[2.60-3.40]	Illumina [254006]	N
614	chr6_dbb_hap3	3887610	3887611	rs2187668	21408207	Chung SA	2011-03-03	PLoS Genet	Differential genetic associations for systemic lupus erythematosus based on anti-dsDNA autoantibody production.	Systemic lupus erythematosus	811 anti-dsDNA positive European ancestry cases, 906 anti-dsDNA negative European ancestry cases, 4,813 European ancestry controls	NA	6p21.32	HLA-DR3	rs2187668-A	0.12	6E-28	(anti-dsDNA +)	2.23	[1.94-2.57]	Illumina [421318] (imputed)	N
614	chr6_dbb_hap3	3887610	3887611	rs2187668	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.32	HLA-DQA1	rs2187668-A	0.1297	8E-93		4.32	[NR]	Illumina [242824]	N
614	chr6_dbb_hap3	3887610	3887611	rs2187668	20694011	Ferreira RC	2010-08-08	Nat Genet	Association of IFIH1 and other autoimmunity risk alleles with selective IgA deficiency.	Immunoglobulin A	430 European ancestry cases, 1,090 European ancestry controls	342 European ancestry cases, 886 European ancestry controls	6p21.32	HLA-DRB1	rs2187668-A	0.13	2E-33		2.53	[2.17-2.95]	Illumina [2057134] (imputed)	N
614	chr6_dbb_hap3	3887610	3887611	rs2187668	20190752	Dubois PC	2010-02-28	Nat Genet	Multiple common variants for celiac disease influencing immune gene expression.	Celiac disease	4,533 European ancestry cases, 10,750 European ancestry controls	4,918 European ancestry cases, 5,684 European ancestry controls	6p21.32	HLA-DQB1, HLA-DQA1	rs2187668-A	0.26	1E-50		6.23	[5.95-6.52]	Illumina [292387]	N
614	chr6_dbb_hap3	3887610	3887611	rs2187668	18204098	Hom G	2008-01-20	N Engl J Med	Association of systemic lupus erythematosus with C8orf13-BLK and ITGAM-ITGAX.	Systemic lupus erythematosus	1,311 European ancestry cases, 3,340 European ancestry controls	793 European ancestry cases, 857 European ancestry controls	6p21.32	HLA-DQA1	rs2187668-A	0.11	3E-21				Illumina [502033]	N
614	chr6_dbb_hap3	3887610	3887611	rs2187668	17558408	van Heel DA	2007-06-10	Nat Genet	A genome-wide association study for celiac disease identifies risk variants in the region harboring IL2 and IL21.	Celiac disease	778 European ancestry cases, 1,422 European ancestry controls	991 European ancestry cases, 1,489 European ancestry controls	6p21.32	HLA-DQA1	rs2187668-A	0.14	1E-19		7.04	[6.08-8.15]	Illumina [310605]	N
614	chr6_dbb_hap3	3887970	3887971	rs9272502	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Asthma	38,369 European ancestry cases, 411,131 European ancestry controls, 13,015 East Asian ancestry cases, 162,933 East Asian ancestry controls	NA	6p21.32		rs9272502-T	NR	2E-70		0.1424	[0.13-0.16] unit increase	Affymetrix, Illumina [25837673] (imputed)	N
614	chr6_dbb_hap3	3888039	3888040	rs9272505	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	334,944 European ancestry, NR ancestry individuals	NA	6p21.32		rs9272505-?	NR	5E-8				Affymetrix [NR] (imputed)	N
614	chr6_dbb_hap3	3888204	3888205	rs9272521	33893285	Guindo-Martinez M	2021-04-23	Nat Commun	The impact of non-additive genetic associations on age-related complex diseases.	Asthma	9,209 European ancestry cases, 47,428 European ancestry controls	NA	6p21.32		rs9272521-A	0.436944	6E-15		1.15		Affymetrix [15607971] (imputed)	N
614	chr6_dbb_hap3	3888285	3888286	rs28680981	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.32		rs28680981-G	0.738	3E-67				Affymetrix [10369434] (imputed)	N
614	chr6_dbb_hap3	3888345	3888346	rs9272532	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.32		rs9272532-C	0.77	2E-33				Affymetrix [10369434] (imputed)	N
614	chr6_dbb_hap3	3888457	3888458	rs9272535	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	6p21.32	HLA-DQA1	rs9272535-A	0.2454	6E-30		0.04727792	[0.039-0.055] unit decrease	Affymetrix [~ 2500000] (imputed)	N
614	chr6_dbb_hap3	3888457	3888458	rs9272535	21131588	Slager SL	2010-12-03	Blood	Genome-wide association study identifies a novel susceptibility locus at 6p21.3 among familial CLL.	Chronic lymphocytic leukemia	407 European ancestry cases, 296 European ancestry controls	252 European ancestry cases, 965 European ancestry controls	6p21.32	HLA-DQA1	rs9272535-A	0.27	9E-8		1.61	[1.35-1.92]	Affymetrix [827777]	N
614	chr6_dbb_hap3	3888579	3888580	rs9272544	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	6p21.32	HLA-DQA1	rs9272544-A	0.4858	8E-11		0.02325084	[0.016-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
614	chr6_dbb_hap3	3888586	3888587	rs9272545	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6p21.32	NR	rs9272545-T	0.6122	1E-8		1.0357327	[1.02-1.05]	Affymetrix [15688218] (imputed)	N
614	chr6_dbb_hap3	3888586	3888587	rs9272545	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	6p21.32	NR	rs9272545-?	NR	7E-288	(conditional)			Affymetrix [15688218] (imputed)	N
614	chr6_dbb_hap3	3888613	3888614	rs28383364	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	6p21.32	BTNL2, C6orf10, HCG23, HLA-DOB, HLA-DQA1, HLA-DQA2, HLA-DQB1, HLA-DQB2, HLA-DRA, HLA-DRB1, HLA-DRB5, HLA-DRB6, TAP2	rs28383364-A	0.802222	3E-17		1.0942891	[1.07-1.12]	Affymetrix [8274727] (imputed)	N
614	chr6_dbb_hap3	3888642	3888643	rs9272546	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	6p21.32		rs9272546-T	0.341931	9E-18		0.0373707	[0.029-0.046] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3888720	3888721	rs28802989	29036319	Qi H	2017-09-26	Hum Mol Genet	Discovery of susceptibility loci associated with tuberculosis in Han Chinese.	Tuberculosis	972 Chinese ancestry cases, 1,316 Gambian ancestry cases, 1,537 Chinese ancestry controls, 1,382 Gambian ancestry controls	NA	6p21.32	NR	rs28802989-?	NR	2E-6				Illumina [7333833] (imputed)	N
614	chr6_dbb_hap3	3888875	3888876	rs9272566	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic glomerulonephritis	566 European ancestry cases, 475,255 European ancestry controls, 210 East Asian ancestry cases, 174,345 East Asian ancestry controls	NA	6p21.32		rs9272566-A	NR	3E-11		0.6694	[0.47-0.87] unit increase	Affymetrix, Illumina [25844108] (imputed)	N
614	chr6_dbb_hap3	3888875	3888876	rs9272566	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.32		rs9272566-G	0.715	3E-45				Affymetrix [10369434] (imputed)	N
614	chr6_dbb_hap3	3888939	3888940	rs28383378	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.32		rs28383378-C	0.653	3E-62				Affymetrix [10369434] (imputed)	N
614	chr6_dbb_hap3	3888953	3888954	rs28383380	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.32		rs28383380-C	0.652	2E-29				Affymetrix [10369434] (imputed)	N
614	chr6_dbb_hap3	3889070	3889071	rs35248896	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs35248896-T	NR	7E-13		0.0255337	[0.019-0.033] unit increase	Affymetrix [319769] (imputed)	N
614	chr6_dbb_hap3	3889070	3889071	rs35248896	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs35248896-T	NR	2E-12		0.0251292	[0.018-0.032] unit increase	Affymetrix [319769] (imputed)	N
614	chr6_dbb_hap3	3889070	3889071	rs35248896	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs35248896-T	NR	7E-12		0.0246503	[0.018-0.032] unit increase	Affymetrix [321169] (imputed)	N
614	chr6_dbb_hap3	3889225	3889226	rs9272594	32141793	Garman L	2020-03-06	Ocul Immunol Inflamm	Genome-Wide Association Study of Ocular Sarcoidosis Confirms HLA Associations and Implicates Barrier Function and Autoimmunity in African Americans.	Ocular sarcoidosis	260 African American cases, 1,551 African American controls	NA	6p21.32	NR	rs9272594-C	NR	2E-6		1.612	[1.33-1.96]	Illumina [13976150] (imputed)	N
614	chr6_dbb_hap3	3889658	3889659	rs9272624	34532061	Hodel F	2021-06-11	Virus Evol	Human genomics of the humoral immune response against polyomaviruses.	Human polyomavirus 6 VP1 antibody levels	5,094 European ancestry individuals	NA	6p21.32		rs9272624-?	NR	1E-13				Affymetrix [NR] (imputed)	N
614	chr6_dbb_hap3	3889705	3889706	rs9272626	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	6p21.32		rs9272626-C	NR	7E-51		0.0361	[0.031-0.041] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
614	chr6_dbb_hap3	3889913	3889914	rs117441922	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (immunosuppressants)	3,483 East Asian ancestry cases, 175,243 East Asian ancestry controls	NA	6p21.32		rs117441922-C	0.127734413	9E-73		0.7531444	[0.67-0.83] unit increase	Illumina [13134967] (imputed)	N
614	chr6_dbb_hap3	3890422	3890423	rs4452681	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in LDL	115,082 European ancestry individuals	NA	6p21.32		rs4452681-C	0.85737	8E-16		0.0477326	[0.036-0.059] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3890422	3890423	rs4452681	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	6p21.32		rs4452681-C	0.85737	4E-14		0.0448685	[0.033-0.057] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3890422	3890423	rs4452681	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of IDL particles	115,082 European ancestry individuals	NA	6p21.32		rs4452681-C	0.85737	2E-15		0.0465836	[0.035-0.058] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3890510	3890511	rs4455710	32041948	Sarin KY	2020-02-10	Nat Commun	Genome-wide meta-analysis identifies eight new susceptibility loci for cutaneous squamous cell carcinoma.	Cutaneous squamous cell carcinoma	19,149 European ancestry cases, 680,049 European ancestry controls	NA	6p21.32	HLA-DQA1	rs4455710-T	0.368	6E-21		0.14	[0.1-0.18] unit increase	NR [13607369] (imputed)	N
614	chr6_dbb_hap3	3890510	3890511	rs4455710	26829030	Asgari MM	2016-01-29	J Invest Dermatol	Identification of Susceptibility Loci for Cutaneous Squamous Cell Carcinoma.	Squamous cell carcinoma	6,891 European ancestry cases, 54,566 European ancestry controls	810 European ancestry cases,  5,600 European ancestry controls	6p21.32	HLA-DQA1	rs4455710-T	0.38	2E-18		1.17	[1.13-1.21]	Affymetrix [9610468] (imputed)	N
614	chr6_dbb_hap3	3890756	3890757	rs1129740	33909500	Moll M	2021-04-28	Am J Physiol Lung Cell Mol Physiol	A Systematic Analysis of Protein-altering Exonic Variants in Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease	up to 31,465 European ancestry cases, up to 203,688 European ancestry controls, up to 1,413 African ancestry cases, up to 6,080 African ancestry controls, up to 287 East Asian ancestry cases, up to 7,484 East Asian ancestry controls, up to 61 Hispanic cases, up to 613 Hispanic controls	NA	6p21.32	HLA-DQA1	rs1129740-A	0.59	1E-9		1.07	[1.04 -1.09]	Illumina [at least 109036]	N
614	chr6_dbb_hap3	3890777	3890778	rs1071630	33328473	Ahluwalia TS	2020-12-16	Nat Commun	FUT2-ABO epistasis increases the risk of early childhood asthma and Streptococcus pneumoniae respiratory illnesses.	Childhood asthma with severe exacerbations	2,866 European ancestry cases,  65,415 European ancestry controls	NA	6p21.32	HLA-DQA1	rs1071630-C	NR	8E-14		1.25	[1.18-1.32]	Illumina [up to 525976] (imputed)	N
614	chr6_dbb_hap3	3890843	3890844	rs1142323	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p21.32	HLA-DQA1	rs1142323-G		8E-51		0.036	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
614	chr6_dbb_hap3	3890880	3890881	rs9272699	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	6p21.32		rs9272699-?	NR	2E-8		0.00587135	[0.0038-0.0079] unit increase	NR [NR]	N
614	chr6_dbb_hap3	3891241	3891242	rs9272729	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	6p21.32	HLA-DQA1	rs9272729-G	NR	3E-13		0.221651	[0.16-0.28] unit increase	Illumina [at least 950000] (imputed)	N
614	chr6_dbb_hap3	3891241	3891242	rs9272729	27333618	Sekula P	2016-02-04	Nephrol Dial Transplant	Genetic risk variants for membranous nephropathy: extension of and association with other chronic kidney disease aetiologies.	Membranous nephropathy	323 European ancestry cases, 345 European ancestry controls	137 European ancestry cases, 379 European ancestry controls	6p21.32	HLA-DQA1	rs9272729-A	0.20	2E-39		7.07	[5.28-9.47]	Illumina [8968426] (imputed)	N
614	chr6_dbb_hap3	3891460	3891461	rs707951	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:0_[M+H]1+/Phosphatidylethanolamine_35:0_[M+H]1+/Phosphatidate_37:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	6p21.32		rs707951-T	NR	4E-10		0.0768107	[0.053-0.101] unit decrease	Affymetrix [87696910] (imputed)	N
614	chr6_dbb_hap3	3891789	3891789	rs748519761	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	6p21.32		rs748519761-T	0.35406	4E-6		0.033083	[0.019-0.047] unit increase	Affymetrix [15580782] (imputed)	N
614	chr6_dbb_hap3	3891900	3891901	rs9272775	33143745	Andlauer TFM	2020-11-04	BMC Med	Treatment- and population-specific genetic risk factors for anti-drug antibodies against interferon-beta: a GWAS.	Neutralising antibody response to interferon beta therapy in multiple sclerosis (antibody titre; IFN?-1b subcutaneous)	up to 2,000 German and Swedish ancestry individuals	up to 757 German and Swedish ancestry individuals	6p21.32		rs9272775-C	0.23	3E-24		0.41	[0.33-0.49] unit increase	Illumina [8550834] (imputed)	N
614	chr6_dbb_hap3	3891900	3891901	rs9272775	33143745	Andlauer TFM	2020-11-04	BMC Med	Treatment- and population-specific genetic risk factors for anti-drug antibodies against interferon-beta: a GWAS.	Binding antibody response to interferon beta therapy in multiple sclerosis (antibody levels; IFN?-1b subcutaneous)	up to 2,000 German and Swedish ancestry individuals	up to 757 German and Swedish ancestry individuals	6p21.32		rs9272775-C	NR	2E-19		0.40715143	[0.32-0.5] unit increase	Illumina [8550834] (imputed)	N
614	chr6_dbb_hap3	3891924	3891925	rs9272777	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	6p21.32	NR	rs9272777-T	0.410563	3E-15		0.0181515	[0.014-0.022] unit increase	Affymetrix [16583148] (imputed)	N
614	chr6_dbb_hap3	3891992	3891993	rs9272780	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs9272780-A	NR	7E-11		0.0186986	[0.013-0.024] unit decrease	Affymetrix [321016] (imputed)	N
614	chr6_dbb_hap3	3891992	3891993	rs9272780	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DQA1	rs9272780-A	NR	3E-14		0.0237876	[0.018-0.03] unit decrease	Affymetrix [323123] (imputed)	N
614	chr6_dbb_hap3	3891992	3891993	rs9272780	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p21.32	HLA-DQA1	rs9272780-A	0.400343	1E-21		0.02813841	[0.022-0.034] unit increase	Affymetrix [93095623] (imputed)	N
614	chr6_dbb_hap3	3892079	3892080	rs1048372	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	HLA-DQA1	rs1048372-C	0.609	5E-12	(Amelogenin, X isoform, AMELX.8578.45.3)	0.18	[0.12-0.24] unit increase	Affymetrix [10572788] (imputed)	N
614	chr6_dbb_hap3	3892088	3892089	rs1048381	33204752	Butler-Laporte G	2020-09-24	Open Forum Infect Dis	Genetic Determinants of Antibody-Mediated Immune Responses to Infectious Diseases Agents: A Genome-Wide and HLA Association Study.	Varicella zoster virus glycoproteins E and I antibody levels	7,595 White British ancestry individuals	NA	6p21.32	HLA-DQA1	rs1048381-G		6E-25		0.22	[0.18-0.26] unit decrease	NR [25472218] (imputed)	N
614	chr6_dbb_hap3	3892104	3892105	rs9260	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DQA1	rs9260-A	NR	8E-14		0.0290366	[0.021-0.037] unit increase	Affymetrix [323123] (imputed)	N
614	chr6_dbb_hap3	3892740	3892741	rs28538060	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.32		rs28538060-G	0.858	1E-17				Affymetrix [10369434] (imputed)	N
614	chr6_dbb_hap3	3892962	3892963	rs9272975	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs9272975-A	0.217	1E-55	(HLA class II histocompatibility antigen, DQ alpha 2 chain, HLA.DQA2.7757.5.3)	0.52	[0.46-0.58] unit decrease	Affymetrix [10572788] (imputed)	N
614	chr6_dbb_hap3	3893059	3893060	rs9272989	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	6p21.32		rs9272989-C	0.30783	5E-6		0.033104	[0.019-0.047] unit increase	Affymetrix [15580782] (imputed)	N
614	chr6_dbb_hap3	3893285	3893286	rs9273012	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs9273012-?	NR	3E-16				Affymetrix [~ 8270000] (imputed)	N
614	chr6_dbb_hap3	3893338	3893339	rs4526236	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hepatic cancer	2,122 East Asian ancestry cases, 159,201 East Asian ancestry controls	NA	6p21.32		rs4526236-A	0.174389152	5E-9		0.24874051	[0.17-0.33] unit decrease	Illumina [13427386] (imputed)	N
614	chr6_dbb_hap3	3893608	3893609	rs9273039	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	6p21.32	HLA-DQA1	rs9273039-T	0.2667	1E-25		0.04249746	[0.035-0.05] unit decrease	Affymetrix [~ 2500000] (imputed)	N
614	chr6_dbb_hap3	3893817	3893818	rs9273062	29534301	Nishida N	2018-03-13	Hepatology	Key HLA-DRB1-DQB1 haplotypes and role of the BTNL2 gene for response to a hepatitis B vaccine.	Response to hepatitis B vaccine	107 Japanese ancestry low responder individuals, 351 Japanese ancestry intermediate responder individuals, 735 Japanese ancestry high responder individuals	NA	6p21.32	HLA-DQB1	rs9273062-?		2E-10		0.165	unit increase	Affymetrix [427664]	N
614	chr6_dbb_hap3	3893957	3893958	rs9273076	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	NA	6p21.32	HLA-DQ1	rs9273076-T		8E-13	(conditional)	1.3	[NR]	Illumina [> 644674] (imputed)	N
614	chr6_dbb_hap3	3894053	3894054	rs6927022	33204752	Butler-Laporte G	2020-09-24	Open Forum Infect Dis	Genetic Determinants of Antibody-Mediated Immune Responses to Infectious Diseases Agents: A Genome-Wide and HLA Association Study.	Epstein-Barr virus EBNA-1 antibody levels	7,972 White British ancestry individuals	NA	6p21.32	HLA-DQA1	rs6927022-A	0.505	2E-76		0.3	[0.27-0.33] unit increase	NR [25472218] (imputed)	N
614	chr6_dbb_hap3	3894053	3894054	rs6927022	32737300	Sallah N	2020-07-31	Nat Commun	Distinct genetic architectures and environmental factors associate with host response to the ?2-herpesvirus infections.	Anti-Epstein-Barr virus nuclear antigen (EBNA) IgG levels	4,365 Ugandan ancestry individuals	2,162  European ancestry individuals	6p21.32	HLA-DRB1	rs6927022-A	0.73	1E-21	(Ugandan)	0.26	[0.22-0.30] unit increase	Illumina [14929118] (imputed)	N
614	chr6_dbb_hap3	3894053	3894054	rs6927022	32737300	Sallah N	2020-07-31	Nat Commun	Distinct genetic architectures and environmental factors associate with host response to the ?2-herpesvirus infections.	Anti-Epstein-Barr virus nuclear antigen (EBNA) IgG levels	4,365 Ugandan ancestry individuals	2,162  European ancestry individuals	6p21.32	HLA-DRB1	rs6927022-A	0.59	7E-26	(EA)	0.16	[0.16-0.16] unit increase	Illumina [14929118] (imputed)	N
614	chr6_dbb_hap3	3894053	3894054	rs6927022	29868224	Sallah N	2017-11-27	Glob Health Epidemiol Genom	Whole-genome association study of antibody response to Epstein-Barr virus in an African population: a pilot.	Epstein Barr virus nuclear antigen 1 IgG levels	1,473 Ugandan ancestry individuals, 2,162 European ancestry individuals	NA	6p21.32	HLA-DRB1	rs6927022-A	0.59	7E-26	(EA)	0.16	[0.13-0.19] unit increase	Illumina [up to 17000000] (imputed)	N
614	chr6_dbb_hap3	3894053	3894054	rs6927022	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Ulcerative colitis	12,366 European and unknown ancestry cases, 33,609 European and unknown ancestry controls	NA	6p21.32	C6orf15, CDSN, PSORS1C2, HCG27, HLA-C, HLA-B, MCCD1, ATP6V1G2, LTA, TNF, LTB, NCR3, AIF1, BAG6, C6orf47, GPANK1, LY6G5B, LY6G5C, LY6G6F, MEGT1, LY6G6E, LY6G6D, DDAH2, SAPCD1, HSPA1L, HSPA1B, C6orf48, NEU1, ZBTB12, NELFE, DXO, AL645922.1, CYP21A2, FKBPL, PRRT1, EGFL8, RNF5, AGER, PBX2, HLA-DRA, HLA-DQB1, HLA-DQA2, HLA-DQB2, PSORS1C1, CCHCR1, TCF19, POU5F1, MICA, MICB, DDX39B, ATP6V1G2-DDX39B, NFKBIL1, LST1, PRRC2A, APOM, CSNK2B, CSNK2B-LY6G5B-1181, ABHD16A, XXbac-BPG32J3.20, C6orf25, LY6G6C, CLIC1, VWA7, VARS, LSM2, HSPA1A, SLC44A4, C2, CFB, SKIV2L, STK19, C4A, C4B, TNXB, ATF6B, PPT2, PPT2-EGFL8, AGPAT1, GPSM3, NOTCH4, C6orf10, HLA-DRB5, HLA-DRB1, HLA-DQA1, MSH5, MSH5-SAPCD1, EHMT2, BTNL2	rs6927022-?		5E-65				Illumina [9578670] (imputed)	N
614	chr6_dbb_hap3	3894053	3894054	rs6927022	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	6p21.32	C6orf15, CDSN, PSORS1C2, HCG27, HLA-C, HLA-B, MCCD1, ATP6V1G2, LTA, TNF, LTB, NCR3, AIF1, BAG6, C6orf47, GPANK1, LY6G5B, LY6G5C, LY6G6F, MEGT1, LY6G6E, LY6G6D, DDAH2, SAPCD1, HSPA1L, HSPA1B, C6orf48, NEU1, ZBTB12, NELFE, DXO, AL645922.1, CYP21A2, FKBPL, PRRT1, EGFL8, RNF5, AGER, PBX2, HLA-DRA, HLA-DQB1, HLA-DQA2, HLA-DQB2, PSORS1C1, CCHCR1, TCF19, POU5F1, MICA, MICB, DDX39B, ATP6V1G2-DDX39B, NFKBIL1, LST1, PRRC2A, APOM, CSNK2B, CSNK2B-LY6G5B-1181, ABHD16A, XXbac-BPG32J3.20, C6orf25, LY6G6C, CLIC1, VWA7, VARS, LSM2, HSPA1A, SLC44A4, C2, CFB, SKIV2L, STK19, C4A, C4B, TNXB, ATF6B, PPT2, PPT2-EGFL8, AGPAT1, GPSM3, NOTCH4, C6orf10, HLA-DRB5, HLA-DRB1, HLA-DQA1, MSH5, MSH5-SAPCD1, EHMT2, BTNL2	rs6927022-?		2E-31				Illumina [9725440] (imputed)	N
614	chr6_dbb_hap3	3894053	3894054	rs6927022	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Ulcerative colitis	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls	6p21.32	HLA-DQB1, HLA-DRA, HLA-DRB1, HLA-DQA1	rs6927022-A	0.535	5E-133		1.444	[1.387-1.503]	Affymetrix, Illumina [1230000] (imputed)	N
614	chr6_dbb_hap3	3894086	3894087	rs6926894	31959851	Olafsdottir TA	2020-01-20	Nat Commun	Eighty-eight variants highlight the role of T cell regulation and airway remodeling in asthma pathogenesis.	Asthma	16,247 European ancestry cases, 346,486 European ancestry controls, 52,942 cases, 355,713 controls	NA	6p21.32	HLA-DQA1, HLA-DQB1, HLA-DRB1, HLA-DRB6, HLA-DQA2, MIR3135B	rs6926894-C	0.59076	2E-126		1.16642	[1.15-1.18]	Affymetrix [32463443] (imputed)	N
614	chr6_dbb_hap3	3894086	3894087	rs6926894	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	6p21.32	HLA-DQA1, HLA-DQB1	rs6926894-T	0.4094	2E-100				Affymetrix [15688218] (imputed)	N
614	chr6_dbb_hap3	3894118	3894119	rs200930495	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs200930495-A	0.148	5E-31	(Complement C4, C4A.C4B.4481.34.2)	0.45	[0.37-0.53] unit increase	Affymetrix [10572788] (imputed)	N
614	chr6_dbb_hap3	3894312	3894313	rs9273113	32141793	Garman L	2020-03-06	Ocul Immunol Inflamm	Genome-Wide Association Study of Ocular Sarcoidosis Confirms HLA Associations and Implicates Barrier Function and Autoimmunity in African Americans.	Ocular sarcoidosis	260 African American cases, 1,551 African American controls	NA	6p21.32	NR	rs9273113-A	NR	6E-6		1.57	[1.29-1.91]	Illumina [13976150] (imputed)	N
614	chr6_dbb_hap3	3894390	3894391	rs9273123	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	6p21.32	HLA-DQA1	rs9273123-A	NR	4E-105		1.187	[1.17-1.2]	Affymetrix [9000000] (imputed)	N
614	chr6_dbb_hap3	3894955	3894956	rs9273177	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.32	HLA-DQA1, HLA-DQB1	rs9273177-?		1E-13		1.1363636	[1.1-1.16]	Affymetrix, Illumina [NR]	N
614	chr6_dbb_hap3	3904489	3904490	rs9273349	20860503	Moffatt MF	2010-09-23	N Engl J Med	A large-scale, consortium-based genomewide association study of asthma.	Asthma	10,365 cases, 16,110 controls	NA	6p21.32	HLA-DQ	rs9273349-C	0.58	7E-14		1.18	[1.13-1.24]	Illumina [582892]	N
614	chr6_dbb_hap3	3904587	3904588	rs2858856	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	HLA-DQB1	rs2858856-A	NR	4E-9		0.0185689	[0.012-0.025] unit increase	Affymetrix [321114] (imputed)	N
614	chr6_dbb_hap3	3904635	3904636	rs6905282	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (multivariate analysis)	477,968 European ancestry individuals	NA	6p21.32	HLA, DQA1, DQB1	rs6905282-A	0.466	5E-28		0.05	[0.04-0.06] unit decrease	NR [NR] (imputed)	N
614	chr6_dbb_hap3	3904635	3904636	rs6905282	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (age of onset)	117,130 European ancestry individuals	NA	6p21.32	HLA-DQA1, HLA-DQB1	rs6905282-A	0.466	1E-23		0.042	[0.034-0.05] unit decrease	NR [7647814] (imputed)	N
614	chr6_dbb_hap3	3904660	3904661	rs4713570	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Malignant lymphoma	3,546 European ancestry cases, 487,257 European ancestry controls, 335 East Asian ancestry cases, 177,342 East Asian ancestry controls	NA	6p21.32		rs4713570-T	NR	1E-16		0.2256	[0.17-0.28] unit increase	Affymetrix, Illumina [25845276] (imputed)	N
614	chr6_dbb_hap3	3904750	3904751	rs7744020	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic rhinitis	18,915 European ancestry cases, 239,773 European ancestry controls	NA	6p21.32	HLA-DQB1	rs7744020-A	0.3071	4E-25		1.131	[1.106-1.157]	Affymetrix [15688218] (imputed)	N
614	chr6_dbb_hap3	3904750	3904751	rs7744020	24204295	Han F	2013-10-31	PLoS Genet	Genome wide analysis of narcolepsy in China implicates novel immune loci and reveals changes in association prior to versus after the 2009 H1N1 influenza pandemic.	Narcolepsy (age of onset)	at least 1,000 Chinese ancestry cases	NA	6p21.32	NR	rs7744020-A	0.272	8E-9		1.9	year decrease	Affymetrix [603382]	N
614	chr6_dbb_hap3	3904825	3904826	rs6905837	32390946	Liu L	2020-04-22	Front Endocrinol (Lausanne)	Twelve New Genomic Loci Associated With Bone Mineral Density.	Total body bone mineral density (MTAG)	66,628 individuals	NA	6p21.32	NR	rs6905837-C	0.95	3E-6		0.05	[0.03-0.07] unit decrease	Affymetrix, Illumina [7369691] (imputed)	N
614	chr6_dbb_hap3	3904825	3904826	rs6905837	32390946	Liu L	2020-04-22	Front Endocrinol (Lausanne)	Twelve New Genomic Loci Associated With Bone Mineral Density.	Heel bone mineral density (MTAG)	426,824 individuals	NA	6p21.32	NR	rs6905837-C	0.95	3E-8		0.03	[0.018-0.042] unit decrease	NR [7369691] (imputed)	N
614	chr6_dbb_hap3	3904869	3904870	rs6928482	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals, at least 88,461 European ancestry individuals	NA	6p21.32	HLA-DQB1	rs6928482-T	0.542	1E-6	(EA)	0.018571429	[0.011-0.026] unit increase	Illumina [1986983] (imputed)	N
614	chr6_dbb_hap3	3904892	3904893	rs9273363	30659077	Onengut-Gumuscu S	2019-01-18	Diabetes Care	Type 1 Diabetes Risk in African-Ancestry Participants and Utility of an Ancestry-Specific Genetic Risk Score.	Type 1 diabetes	1,021 African American cases, 2,928 African American controls	NA	6p21.32	MHC	rs9273363-A	0.13	5E-138		5.48	[4.80-6.27]	Illumina [114874]	N
614	chr6_dbb_hap3	3904892	3904893	rs9273363	23770605	Berndt SI	2013-06-16	Nat Genet	Genome-wide association study identifies multiple risk loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	2,179 European ancestry cases, 6,221 European ancestry controls	1,709 European ancestry cases, 6,318 European ancestry controls	6p21.32	HLA	rs9273363-A	0.27	2E-10		1.24	[NR]	Illumina [549934]	N
614	chr6_dbb_hap3	3904922	3904923	rs9273364	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Carpal tunnel syndrome	18,855 European ancestry cases, 461,346 European ancestry controls, 192 East Asian ancestry cases, 178,534 East Asian ancestry controls	NA	6p21.32		rs9273364-G	NR	1E-8		0.0702	[0.046-0.094] unit increase	Affymetrix, Illumina [25844227] (imputed)	N
614	chr6_dbb_hap3	3904922	3904923	rs9273364	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 29,0641 European ancestry controls	NA	6p21.32	HLA-DQB1	rs9273364-G	0.302909	3E-75		0.23193699	[0.21-0.26] unit increase	Affymetrix [7288503] (imputed)	N
614	chr6_dbb_hap3	3904931	3904932	rs6906021	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Angiopoietin-1 receptor levels	21,758 European ancestry individuals	9,173 individuals	6p21.32		rs6906021-T	0.56	8E-14		0.0626	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
614	chr6_dbb_hap3	3904931	3904932	rs6906021	23817571	Bonnelykke K	2013-06-30	Nat Genet	Meta-analysis of genome-wide association studies identifies ten loci influencing allergic sensitization.	Allergic sensitization	5,789 European ancestry cases, 10,056 European ancestry controls	6,114 European ancestry cases, 9,920 European ancestry controls	6p21.32	HLA-DQB1, HLA-DQA1	rs6906021-C	0.45	2E-12		1.15	[1.11-1.2]	Affymetrix, Illumina [~ 2500000] (imputed)	N
614	chr6_dbb_hap3	3904931	3904932	rs6906021	23817569	Hinds DA	2013-06-30	Nat Genet	A genome-wide association meta-analysis of self-reported allergy identifies shared and allergy-specific susceptibility loci.	Self-reported allergy	53,862 European ancestry individuals	NA	6p21.32	HLA-DQB1, HLA-DQA1	rs6906021-C	0.4749	7E-15		0.0945	[0.071-0.118] unit increase	Illumina [2400000] (imputed)	N
614	chr6_dbb_hap3	3904968	3904969	rs28407950	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6p21.32	NR	rs28407950-C	0.7564	7E-45		1.1032656	[1.09-1.12]	Affymetrix [15688218] (imputed)	N
614	chr6_dbb_hap3	3904968	3904969	rs28407950	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic disease (asthma, hay fever or eczema)	106,772 European ancestry cases, 239,773 European ancestry controls	83,335 cases, 34,934 controls	6p21.32	NR	rs28407950-C	0.7564	7E-70		1.1201972	[1.11-1.13]	Affymetrix [15688218] (imputed)	N
614	chr6_dbb_hap3	3904968	3904969	rs28407950	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (childhood onset)	9,433 British ancestry cases, 318,237 British ancestry controls	NA	6p21.32	HLA-DQA1, HLA-DQB	rs28407950-C	0.756	1E-59		1.354	[1.306-1.405]	Affymetrix [10894596] (imputed)	N
614	chr6_dbb_hap3	3904968	3904969	rs28407950	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (adult onset)	21,564 British ancestry cases, 318,237 British ancestry controls	NA	6p21.32	HLA-DQA1, HLA-DQB	rs28407950-C	0.756	8E-31		1.148	[1.121-1.175]	Affymetrix [10894596] (imputed)	N
614	chr6_dbb_hap3	3904968	3904969	rs28407950	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (antihistamines for systemic use)	13,984 European ancestry cases, 137,652 European ancestry controls	NA	6p21.32	HLA-DQB1	rs28407950-T	0.243266	1E-10		0.094664484	[0.066-0.123] unit decrease	Affymetrix [7288503] (imputed)	N
614	chr6_dbb_hap3	3905023	3905024	rs34004019	30013184	Waage J	2018-07-16	Nat Genet	Genome-wide association and HLA fine-mapping studies identify risk loci and genetic pathways underlying allergic rhinitis.	Allergic rhinitis	59,762 European and unknown ancestry cases, 152,358 European and unknown ancestry controls	60,720 European ancestry cases, 618,527 European ancestry controls	6p21.32	HLA-DQB1, HLA-DQA1	rs34004019-A	0.7331	1E-30		1.1235955	[1.11-1.15]	Affymetrix, Illumina, Perlegen [16531985] (imputed)	N
614	chr6_dbb_hap3	3905023	3905024	rs34004019	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	6p21.32	HLA-DQA1, HLA-DQB1	rs34004019-A	0.7	4E-52		1.101	[1.09-1.11]	Affymetrix, Illumina [8307659] (imputed)	N
614	chr6_dbb_hap3	3905023	3905024	rs34004019	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Allergy	66,973 European ancestry cases, 113,768 European ancestry controls	NA	6p21.32	HLA-DQB1, HLA-DQA1	rs34004019-?	NR	3E-24		1.1086475	[1.09-1.13]	Illumina [12845910] (imputed)	N
614	chr6_dbb_hap3	3905058	3905059	rs9273367	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 1 diabetes	6,447 European ancestry cases, 451,248 European ancestry controls, 1,219 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	6p21.32		rs9273367-T	NR	6E-306		0.7272	[0.69-0.77] unit increase	Affymetrix, Illumina [25837106] (imputed)	N
614	chr6_dbb_hap3	3905071	3905072	rs28414666	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	6p21.32		rs28414666-A	0.134651377	2E-27		0.1486309	[0.12-0.18] unit increase	Illumina [13429980] (imputed)	N
614	chr6_dbb_hap3	3905095	3905096	rs9273368	34737425	Mansour Aly D	2021-11-04	Nat Genet	Genome-wide association analyses highlight etiological differences underlying newly defined subtypes of diabetes.	Severe autoimmune type 2 diabetes	452 Scandinavian ancestry cases, 2,744 Scandinavian ancestry controls	NA	6p21.32	HLA-DQA1, HLA-DQB1	rs9273368-A	0.350323	7E-40		2.678	[2.314 - 3.1]	Illumina [5396854] (imputed)	N
614	chr6_dbb_hap3	3905095	3905096	rs9273368	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	6p21.32		rs9273368-A	NR	2E-49		0.1157	[0.1-0.13] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
614	chr6_dbb_hap3	3905095	3905096	rs9273368	30254083	Cousminer DL	2018-09-25	Diabetes Care	First Genome-Wide Association Study of Latent Autoimmune Diabetes in Adults Reveals Novel Insights Linking Immune and Metabolic Diabetes.	Latent autoimmune diabetes vs. type 2 diabetes	2,779 European ancestry latent autoimmune diabetes cases, 10,396 European ancestry type 2 diabetes cases	NA	6p21.32	HLA-DQB1	rs9273368-?	0.301	3E-78		2.439	[2.222-2.676]	Affymetrix, Illumina [8328843] (imputed)	N
614	chr6_dbb_hap3	3905095	3905096	rs9273368	30254083	Cousminer DL	2018-09-25	Diabetes Care	First Genome-Wide Association Study of Latent Autoimmune Diabetes in Adults Reveals Novel Insights Linking Immune and Metabolic Diabetes.	Latent autoimmune diabetes vs. type 1 diabetes	2,454 European ancestry latent autoimmune diabetes cases, 968 European ancestry type 1 diabetes cases	NA	6p21.32	HLA-DQB1	rs9273368-G	0.35	8E-40		2.99	[2.60-3.91]	Affymetrix, Illumina [8465706] (imputed)	N
614	chr6_dbb_hap3	3905112	3905113	rs9273370	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Hypothyroidism	17,558 European ancestry cases, 117,083 European ancestry controls	NA	6p21.32	HLA-DQA1, HLA-DQB1	rs9273370-?	NR	5E-34		1.1737089	[1.14-1.20]	Illumina [13676411] (imputed)	N
614	chr6_dbb_hap3	3905194	3905195	rs28539606	33731350	Nandakumar P	2021-03-17	Sci Adv	Nuclear genome-wide associations with mitochondrial heteroplasmy.	Mitochondrial heteroplasmy measurement	982,072 European ancestry individuals	NA	6p21.32	HLA-DQB1	rs28539606-G	0.147	4E-23		0.02	[0.016-0.024] unit increase	NR [57525634] (imputed)	N
614	chr6_dbb_hap3	3905219	3905220	rs9273373	24388013	Ferreira MA	2013-12-30	J Allergy Clin Immunol	Genome-wide association analysis identifies 11 risk variants associated with the asthma with hay fever phenotype.	Asthma and hay fever	6,685 European ancestry cases, 14,091 European ancestry controls	878 European ancestry cases, 2,455 European ancestry controls	6p21.32	HLA-DQB1	rs9273373-G	0.54	4E-14		1.24	[1.17-1.30]	Illumina [up to 4972397] (imputed)	N
614	chr6_dbb_hap3	3905232	3905233	rs9273374	29785011	Zhu Z	2018-05-21	Nat Genet	A genome-wide cross-trait analysis from UK Biobank highlights the shared genetic architecture of asthma and allergic diseases.	Asthma or allergic disease (pleiotropy)	14,085 European asthma cases, 25,685 European ancestry allergic diseases cases, 76,768 European ancestry controls	NA	6p21.32	HLA-DOB, HLA-DQA1, HLA-DQA2, HLA-DQB1, HLA-DQB2, HLA-DRB1, HLA-DRB6, TAP2	rs9273374-?	NR	8E-35		1.1904762		NR [74888535] (imputed)	N
614	chr6_dbb_hap3	3905357	3905358	rs12055445	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQB1	rs12055445-A	NR	2E-8		0.0159074	[0.01-0.021] unit increase	Affymetrix [321016] (imputed)	N
614	chr6_dbb_hap3	3905357	3905358	rs12055445	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DQB1	rs12055445-G	NR	1E-12		0.0218742	[0.016-0.028] unit decrease	Affymetrix [323123] (imputed)	N
614	chr6_dbb_hap3	3905357	3905358	rs12055445	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	6p21.32	NR	rs12055445-A	0.500659	5E-18		0.0175207	[0.014-0.021] unit decrease	NR [NR]	N
614	chr6_dbb_hap3	3905357	3905358	rs12055445	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling worry	372,869 European ancestry individuals	NA	6p21.32	HLA-DRA	rs12055445-A	0.498063	3E-12		6.996	unit decrease	NR [10847151] (imputed)	N
614	chr6_dbb_hap3	3905357	3905358	rs12055445	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	6p21.32	HLA-DQA1, HLA-DQB1	rs12055445-G	0.513	6E-11		0.0247074	[0.017-0.032] unit decrease	Illumina [13519193] (imputed)	N
614	chr6_dbb_hap3	3905404	3905405	rs9273375	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DQB1	rs9273375-G	NR	9E-11		0.0262281	[0.018-0.034] unit increase	Affymetrix [323123] (imputed)	N
614	chr6_dbb_hap3	3905512	3905513	rs9273379	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Alanine aminotransferase levels in excessive alcohol consumption	951 individuals	NA	6p21.32	NR	rs9273379-?	NR	2E-6		0.0267	[0.016-0.038] unit decrease	Illumina [~ 7800000] (imputed)	N
614	chr6_dbb_hap3	3905586	3905587	rs4713572	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs4713572-C	0.411	2E-15	(Rac GTPase-activating protein 1, RACGAP1.13587.10.3)	0.21	[0.15-0.27] unit increase	Affymetrix [10572788] (imputed)	N
614	chr6_dbb_hap3	3905611	3905612	rs9273386	34103634	Valette K	2021-06-08	Commun Biol	Prioritization of candidate causal genes for asthma in susceptibility loci derived from UK Biobank.	Asthma	56,167 White-British ancestry cases, 352,255 White-British ancestry controls	NA	6p21.32	HLA-DQA1, HLA-DQB1	rs9273386-C	0.588625259859572	2E-48		0.13383532	[0.12-0.15] unit increase	Affymetrix [35186738] (imputed)	N
614	chr6_dbb_hap3	3905618	3905619	rs4713573	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Juvenile rheumatoid arthritis	216 European ancestry cases, 409,001 European ancestry controls, 110 East Asian ancestry cases, 173,268 East Asian ancestry controls	NA	6p21.32		rs4713573-C	NR	3E-9		0.5903	[0.39-0.79] unit increase	Affymetrix, Illumina [25833140] (imputed)	N
614	chr6_dbb_hap3	3905725	3905726	rs28724231	30552173	Aterido A	2018-12-14	Ann Rheum Dis	Genetic variation at the glycosaminoglycan metabolism pathway contributes to the risk of psoriatic arthritis but not psoriasis.	Psoriatic arthritis	744 Spanish ancestry cases, 1,454 Spanish ancestry controls	1,430 cases, 1,417 controls	6p21.32	NR	rs28724231-?	NR	4E-11		6.62	[NR] z-score decrease	Illumina [1387382] (imputed)	N
614	chr6_dbb_hap3	3905763	3905764	rs9273401	27189021	Cook JP	2016-05-18	Eur J Hum Genet	Multi-ethnic genome-wide association study identifies novel locus for type 2 diabetes susceptibility.	Type 2 diabetes	746 African American cases, 2,825 African American controls, 743 East Asian ancestry cases, 3,992 East Asian ancestry controls, 7,111 European ancestry cases, 49,688 European ancestry controls, 1,147 Latino cases, 5,352 Latino controls	12,171 European ancestry cases, 56,862 European ancestry controls	6p21.32	MHC	rs9273401-G	0.112	2E-9		1.16	[1.11-1.22]	NR [at least 8497425] (imputed)	N
614	chr6_dbb_hap3	3905796	3905797	rs9273404	31816047	Boutin TS	2019-12-09	Hum Mol Genet	Insights into the genetic basis of retinal detachment.	Cataracts (operation)	21,679 British ancestry cases, 387,283 British ancestry controls	NA	6p21.32	HLA-DQB1	rs9273404-?	0.469	3E-8		1.0600239	[1.04-1.08]	Affymetrix [NR] (imputed)	N
614	chr6_dbb_hap3	3905796	3905797	rs9273404	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	6p21.32	HLA-DQB1	rs9273404-G	0.47	2E-11	(conditional on rs2070600)	1.08	[NR]	Affymetrix, Illumina [6224355] (imputed)	N
614	chr6_dbb_hap3	3905886	3905887	rs9273410	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p21.32	NR	rs9273410-A	0.44	7E-16		1.15	[1.11-1.19]	Affymetrix [9886854] (imputed)	N
614	chr6_dbb_hap3	3905886	3905887	rs9273410	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p21.32	NR	rs9273410-A	0.44	3E-22			[NR]	Affymetrix [9886854] (imputed)	N
614	chr6_dbb_hap3	3905886	3905887	rs9273410	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p21.32	NR	rs9273410-A	0.44	2E-21		1.13	[1.1-1.16]	Affymetrix [9886854] (imputed)	N
614	chr6_dbb_hap3	3905886	3905887	rs9273410	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p21.32	NR	rs9273410-A	0.44	7E-22			[NR]	Affymetrix [9886854] (imputed)	N
614	chr6_dbb_hap3	3905886	3905887	rs9273410	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in non-current smokers	16,488 European ancestry cases, 169,688 European ancestry controls	NA	6p21.32	NR	rs9273410-A	0.44	3E-21		1.13	[1.1-1.16]	Affymetrix [9886854] (imputed)	N
614	chr6_dbb_hap3	3905886	3905887	rs9273410	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in never smokers	8,631 European ancestry cases, 120,544 European ancestry controls	NA	6p21.32	NR	rs9273410-A	0.44	9E-16		1.15	[1.11-1.19]	Affymetrix [9886854] (imputed)	N
614	chr6_dbb_hap3	3905886	3905887	rs9273410	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in ever smokers	12,446 European ancestry cases, 59,145 European ancestry controls	NA	6p21.32	NR	rs9273410-A	0.44	3E-9		1.1	[1.06-1.13]	Affymetrix [9886854] (imputed)	N
614	chr6_dbb_hap3	3905886	3905887	rs9273410	30552067	Shrine N	2018-12-11	Lancet Respir Med	Moderate-to-severe asthma in individuals of European ancestry: a genome-wide association study.	Asthma (moderate or severe)	5,135 European ancestry cases, 25,675 European ancestry controls	5,414 European ancestry cases, 21,471 European ancestry controls	6p21.32	HLA-DQB1	rs9273410-A	0.5529999999999999	6E-32		1.21	[1.17-1.25]	Affymetrix [33771858] (imputed)	N
614	chr6_dbb_hap3	3906092	3906093	rs9273429	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQB1	rs9273429-G	NR	6E-9		0.0188118	[0.012-0.025] unit decrease	Affymetrix [319769] (imputed)	N
614	chr6_dbb_hap3	3906116	3906117	rs1064173	32534018	Liu X	2020-06-10	Brain Behav Immun	Genetic factors underlying the bidirectional relationship between autoimmune and mental disorders - findings from a Danish population-based study.	Autoimmune traits	1,383 Danish ancestry cases, 62,656 Danish ancestry controls	NA	6p21.32	NR	rs1064173-A	0.25	3E-36		1.8	[1.64-1.96]	NR [7721839] (imputed)	N
614	chr6_dbb_hap3	3906336	3906337	rs6689	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	6p21.32		rs6689-G	NR	1E-44		0.0349	[0.03-0.04] unit increase	Affymetrix, Illumina [20536134] (imputed)	N
614	chr6_dbb_hap3	3906336	3906337	rs6689	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	135,808 East Asian ancestry individuals	NA	6p21.32		rs6689-G	0.191232	2E-10		0.0291023	[0.02-0.038] unit increase	Illumina [13476599] (imputed)	N
614	chr6_dbb_hap3	3906336	3906337	rs6689	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	6p21.32	NR	rs6689-?	NR	7E-11				Affymetrix [~ 8270000] (imputed)	N
614	chr6_dbb_hap3	3906336	3906337	rs6689	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs6689-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
614	chr6_dbb_hap3	3906350	3906351	rs1063355	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	6p21.32	HLA-DQB1	rs1063355-T	0.397563657636028	4E-19		0.0709	[0.055-0.086] unit decrease	NR [5035015] (imputed)	N
614	chr6_dbb_hap3	3906350	3906351	rs1063355	24837172	Juyal G	2014-05-16	Gut	Genome-wide association scan in north Indians reveals three novel HLA-independent risk loci for ulcerative colitis.	Ulcerative colitis	603 North Indian ancestry cases, 622 North Indian ancestry controls	733 North Indian ancestry cases, 1,148 North Indian ancestry controls	6p21.32	HLA-DQB1, HLA-DRA, HLA-DQA1	rs1063355-A	NR	2E-6		1.43	[1.23-1.66]	Illumina [480391]	N
614	chr6_dbb_hap3	3906431	3906432	rs1766	33204752	Butler-Laporte G	2020-09-24	Open Forum Infect Dis	Genetic Determinants of Antibody-Mediated Immune Responses to Infectious Diseases Agents: A Genome-Wide and HLA Association Study.	Anti-varicella zoster virus IgG seropositivity	8,735 White British ancestry individuals	NA	6p21.32	HLA-DQB1	rs1766-A	0.53	1E-11		0.04	unit decrease	NR [25472218] (imputed)	N
614	chr6_dbb_hap3	3906469	3906470	rs1770	34212547	An J	2021-07-01	Allergy Asthma Immunol Res	Genome-Wide Association Study of Korean Asthmatics: A Comparison With UK Asthmatics.	Adult asthma	1,386 Korean ancestry cases, 5,205 Korean ancestry controls	NA	6p21.32		rs1770-G	0.17	5E-10		1.41	[1.27-1.58]	Affymetrix [4922160] (imputed)	N
614	chr6_dbb_hap3	3906469	3906470	rs1770	31152121	Zhu M	2019-05-31	Diabetes Care	Identification of Novel T1D Risk Loci and Their Association With Age and Islet Function at Diagnosis in Autoantibody-Positive T1D Individuals: Based on a Two-Stage Genome-Wide Association Study.	Type 1 diabetes	1,005 Han Chinese ancestry cases, 1,257 Han Chinese ancestry controls	1,378 Han Chinese ancestry cases, 3,774 Han Chinese ancestry controls	6p21.32	HLA-DQB1	rs1770-G	0.46	2E-232		4.28	[3.92-4.68]	Illumina [787224] (imputed)	N
614	chr6_dbb_hap3	3906559	3906560	rs1063348	29903748	Debiec H	2018-06-14	J Am Soc Nephrol	Transethnic, Genome-Wide Analysis Reveals Immune-Related Risk Alleles and Phenotypic Correlates in Pediatric Steroid-Sensitive Nephrotic Syndrome.	Childhood steroid-sensitive nephrotic syndrome	56 African cases, 454 African controls	NA	6p21.32	HLA-DQB1	rs1063348-?	0.48	3E-7		3.24	[1.93-5.45]	Illumina [at least 7529344] (imputed)	N
614	chr6_dbb_hap3	3906559	3906560	rs1063348	29903748	Debiec H	2018-06-14	J Am Soc Nephrol	Transethnic, Genome-Wide Analysis Reveals Immune-Related Risk Alleles and Phenotypic Correlates in Pediatric Steroid-Sensitive Nephrotic Syndrome.	Childhood steroid-sensitive nephrotic syndrome	244 European ancestry cases, 2,552 European ancestry controls, 56 African cases, 454 African controls, 85 Maghrebian cases, 261 Maghrebian controls	NA	6p21.32	HLA-DQB1	rs1063348-G	0.60	9E-23		3.33	[2.62-4.23]	Illumina [at least 7529344] (imputed)	N
614	chr6_dbb_hap3	3906559	3906560	rs1063348	29903748	Debiec H	2018-06-14	J Am Soc Nephrol	Transethnic, Genome-Wide Analysis Reveals Immune-Related Risk Alleles and Phenotypic Correlates in Pediatric Steroid-Sensitive Nephrotic Syndrome.	Childhood steroid-sensitive nephrotic syndrome	132 European ancestry cases, 2,000 European ancestry controls	NA	6p21.32	HLA-DQB1	rs1063348-?	0.61	1E-8		2.96	[2.04-4.29]	Illumina [at least 7529344] (imputed)	N
614	chr6_dbb_hap3	3906574	3906575	rs36205178	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Scarlet fever	6,812 European ancestry cases, 113,837 European ancestry controls	NA	6p21.32	HLA-DQB1	rs36205178-C	0.81	9E-14		1.24	[1.21-1.28]	Illumina [at least 560000] (imputed)	N
614	chr6_dbb_hap3	3906720	3906721	rs2854277	29899525	Klimentidis YC	2018-06-13	Int J Obes (Lond)	Genome-wide association study of habitual physical activity in over 377,000 UK Biobank participants identifies multiple variants including CADM2 and APOE.	Moderate to vigorous physical activity levels	377,234 European ancestry individuals	NA	6p21.32	HLA-DQB1	rs2854277-C	0.92	3E-10		0.032	unit increase	Affymetrix [11800000] (imputed)	N
614	chr6_dbb_hap3	3906775	3906776	rs9273484	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Agathobacter sp000434275 abundance in stool	5,959 Finnish ancestry individuals	NA	6p21.32		rs9273484-A	0.26703	4E-9		0.114715	[0.077-0.153] unit decrease	Illumina [7980478] (imputed)	N
614	chr6_dbb_hap3	3906785	3906786	rs9273487	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.32		rs9273487-A	0.824	4E-20				Affymetrix [10369434] (imputed)	N
614	chr6_dbb_hap3	3906979	3906980	rs9273500	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DQB1, HLA-DQB1-AS1, XXbac-BPG254F23.6	rs9273500-T	NR	2E-9		0.0229852	[0.015-0.031] unit increase	Affymetrix [323123] (imputed)	N
614	chr6_dbb_hap3	3906998	3906999	rs9273501	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs9273501-A	NR	9E-16		1.1098778	[1.08-1.14]	Affymetrix [7846216] (imputed)	N
614	chr6_dbb_hap3	3907065	3907066	rs2854275	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma and major depressive disorder	46,802 European ancestry asthma cases, 59,851 European ancestry major depressive disorder cases, 460,635 European ancestry controls	NA	6p21.32	HLA-DOB, HLA-DQA1, HLA-DQA2, HLA-DQB1, HLA-DQB2, TAP2	rs2854275-?	NR	3E-13				Affymetrix [up to 13554551] (imputed)	N
614	chr6_dbb_hap3	3907065	3907066	rs2854275	23326239	Rubicz R	2013-01-10	PLoS Genet	A genome-wide integrative genomic study localizes genetic factors influencing antibodies against Epstein-Barr virus nuclear antigen 1 (EBNA-1).	Epstein-Barr virus immune response (EBNA-1)	1,367 Mexican American indivduals	589 Mexican American indivduals	6p21.32	PSORS1C1, BAT2, EHMT2, HLA-DQB1, C6orf15, BAT4, NOTCH4, PRRT1, HLA-B	rs2854275-T	0.064	2E-10	(Conditional on rs477515 - Quantitative)	0.45	[NR] unit decrease	Illumina [944565]	N
614	chr6_dbb_hap3	3907175	3907177	rs201043192	26423011	Wain LV	2015-09-27	Lancet Respir Med	Novel insights into the genetics of smoking behaviour, lung function, and chronic obstructive pulmonary disease (UK BiLEVE): a genetic association study in UK Biobank.	Lung function (low FEV1 vs high FEV1)	19,493 European ancestry individuals with low FEV1 measurements, 9,808 European ancestry individuals with high FEV1 measurements	NA	6p21.32	HLA-DQB1	rs201043192-A	NR	5E-9		0.114	[0.077-0.151] unit increase	Affymetrix [28509962] (imputed)	N
614	chr6_dbb_hap3	3907297	3907298	rs28688207	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Sarcoidosis	1,718 European ancestry cases, 484,955 European ancestry controls, 220 East Asian ancestry cases, 177,667 East Asian ancestry controls	NA	6p21.32		rs28688207-C	NR	1E-15		0.7435	[0.56-0.93] unit increase	Affymetrix, Illumina [25845061] (imputed)	N
614	chr6_dbb_hap3	3907453	3907454	rs9273542	31263063	Dufek S	2019-07-01	J Am Soc Nephrol	Genetic Identification of Two Novel Loci Associated with Steroid-Sensitive Nephrotic Syndrome.	Childhood steroid-sensitive nephrotic syndrome	422 European ancestry cases, 5,642 European ancestry controls	NA	6p21.32	HLA-DQB1	rs9273542-T	0.24	2E-43		3.39	[2.86-4.03]	Illumina [5216266] (imputed)	N
614	chr6_dbb_hap3	3907545	3907546	rs3828785	27560520	Shaffer JR	2016-08-25	PLoS Genet	Genome-Wide Association Study Reveals Multiple Loci Influencing Normal Human Facial Morphology.	Eye morphology	2,447 European ancestry individuals	671 European ancestry individuals	6p21.32	Intergenic	rs3828785-A	0.03169	2E-7	(Outercanthal width)	1.449	[0.91-1.99] unit decrease	Illumina [34985077] (imputed)	N
614	chr6_dbb_hap3	3907553	3907554	rs28724235	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.32		rs28724235-T	0.934	1E-16				Affymetrix [10369434] (imputed)	N
614	chr6_dbb_hap3	3907554	3907555	rs9273552	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs9273552-A	0.07	2E-31	(Ubiquitin carboxyl-terminal hydrolase 25, USP25.9215.117.3)	0.62	[0.52-0.72] unit increase	Affymetrix [10572788] (imputed)	N
614	chr6_dbb_hap3	3907721	3907722	rs28724238	32488134	Auckland K	2020-06-02	Sci Rep	The Human Leukocyte Antigen Locus and Rheumatic Heart Disease Susceptibility in South Asians and Europeans.	Rheumatic heart disease	510 Northern Indian cases, 344 Northern Indian controls, 162 Fijian Indian cases, 147 Fijian Indian controls	150 European ancestry cases, 1,309 European ancestry controls	6p21.32	HLA-DQB1	rs28724238-?		2E-7		1.75	[1.42-2.15]	Illumina [6925553] (imputed)	N
614	chr6_dbb_hap3	3907987	3907988	rs28724242	32589924	Bi W	2020-06-23	Am J Hum Genet	A Fast and Accurate Method for Genome-Wide Time-to-Event Data Analysis and Its Application to UK Biobank.	Essential hypertension (time to event)	76,566 British ancestry cases, 206,305 British ancestry controls	NA	6p21.32	HLA-DQB142	rs28724242-?	NR	4E-8				NR [~ 24000000] (imputed)	N
614	chr6_dbb_hap3	3908520	3908521	rs1049130	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQB1, XXbac-BPG254F23.6	rs1049130-A	NR	1E-11		0.0190514	[0.014-0.025] unit increase	Affymetrix [321016] (imputed)	N
614	chr6_dbb_hap3	3908550	3908551	rs1049087	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hypothyroidism	1,114 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	6p21.32		rs1049087-A	0.609286629	4E-8		0.24121252	[0.16-0.33] unit increase	Illumina [13429045] (imputed)	N
614	chr6_dbb_hap3	3908550	3908551	rs1049087	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Lymphocytic leukemia	852 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs1049087-A	NR	7E-7		1.2743725	NR	Affymetrix [7846216] (imputed)	N
614	chr6_dbb_hap3	3908819	3908820	rs9274096	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.32		rs9274096-A	0.604	1E-14				Affymetrix [10369434] (imputed)	N
614	chr6_dbb_hap3	3920060	3920061	rs9274845	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium HDL	115,082 European ancestry individuals	NA	6p21.32		rs9274845-C	0.579977	1E-11		0.0273653	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3920060	3920061	rs9274845	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium HDL	115,082 European ancestry individuals	NA	6p21.32		rs9274845-C	0.579977	6E-13		0.0292315	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3920060	3920061	rs9274845	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in HDL	115,082 European ancestry individuals	NA	6p21.32		rs9274845-C	0.579977	6E-9		0.0228022	[0.015-0.03] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3920060	3920061	rs9274845	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	6p21.32		rs9274845-C	0.579977	1E-8		0.022675	[0.015-0.03] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3920060	3920061	rs9274845	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein A1 levels	115,082 European ancestry individuals	NA	6p21.32		rs9274845-C	0.579977	1E-8		0.0226077	[0.015-0.03] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3920068	3920069	rs9274846	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium HDL particles	115,082 European ancestry individuals	NA	6p21.32		rs9274846-C	0.579991	3E-10		0.0251988	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3920068	3920069	rs9274846	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium HDL	115,082 European ancestry individuals	NA	6p21.32		rs9274846-C	0.579991	9E-9		0.0230622	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3920068	3920069	rs9274846	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	6p21.32		rs9274846-C	0.579991	7E-9		0.023128	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
614	chr6_dbb_hap3	3921075	3921076	rs9274890	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs9274890-A	0.257	2E-12	(Complement C4, C4A.C4B.4481.34.2)	0.22	[0.16-0.28] unit increase	Affymetrix [10572788] (imputed)	N
614	chr6_dbb_hap3	3921148	3921149	rs9274903	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs9274903-A	0.266	4E-14	(Complement C4, C4A.C4B.4481.34.2)	0.22	[0.16-0.28] unit increase	Affymetrix [10572788] (imputed)	N
614	chr6_dbb_hap3	3921798	3921799	rs9274954	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	HLA-DQB1	rs9274954-T	0.366	5E-13	(PAX-interacting protein 1, PAXIP1.12894.3.3)	0.22	[0.16-0.28] unit increase	Affymetrix [10572788] (imputed)	N
614	chr6_dbb_hap3	3922403	3922404	rs1794484	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lung cancer	4,444 East Asian ancestry cases, 174,282 East Asian ancestry controls	NA	6p21.32		rs1794484-C	0.340651021	5E-10		0.1469222	[0.1-0.19] unit increase	Illumina [13429980] (imputed)	N
614	chr6_dbb_hap3	3922679	3922680	rs1694123	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	HLA-DQB1	rs1694123-G	0.157	8E-13	(Zinc fingers and homeoboxes protein 3, ZHX3.10036.201.3)	0.27	[0.19-0.35] unit increase	Affymetrix [10572788] (imputed)	N
614	chr6_dbb_hap3	3923174	3923175	rs9275052	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.32	NR	rs9275052-G	NR	1E-10		0.028	unit decrease	Affymetrix [at least 7091467] (imputed)	N
614	chr6_dbb_hap3	3923174	3923175	rs9275052	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.32	NR	rs9275052-G	0.404	5E-9	(EA)	0.027	unit decrease	Affymetrix [at least 7091467] (imputed)	N
614	chr6_dbb_hap3	3923174	3923175	rs9275052	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.32	NR	rs9275052-G	NR	2E-6		0.021	unit decrease	Affymetrix [at least 7091467] (imputed)	N
614	chr6_dbb_hap3	3923966	3923967	rs545072519	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	HLA-DQB1	rs545072519-C	NR	2E-9		0.0333434	[0.022-0.044] unit increase	Affymetrix [321114] (imputed)	N
614	chr6_dbb_hap3	3924681	3924682	rs1694112	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	6p21.32	NR	rs1694112-?	NR	8E-41	(conditional)			Affymetrix [15688218] (imputed)	N
614	chr6_dbb_hap3	3924693	3924694	rs9275109	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	HLA-DQB1	rs9275109-G	NR	2E-9		0.0176049	[0.012-0.023] unit decrease	Affymetrix [321114] (imputed)	N
614	chr6_dbb_hap3	3925633	3925634	rs9275134	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Cancer	56,634 White British ancestry cases, 218,196 White British ancestry controls	NA	6p21.32		rs9275134-?	NR	6E-6		0.964671	[0.95-0.98]	NR [688737]	N
614	chr6_dbb_hap3	3926100	3926101	rs17212146	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	6p21.32		rs17212146-A	0.01175	2E-14		0.08258159	[0.061-0.104] unit increase	Affymetrix [93095623] (imputed)	N
614	chr6_dbb_hap3	3926100	3926101	rs17212146	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6p21.32		rs17212146-A	0.01175	3E-25		0.11182327	[0.091-0.133] unit increase	Affymetrix [93095623] (imputed)	N
614	chr6_dbb_hap3	3926564	3926565	rs17212223	24204295	Han F	2013-10-31	PLoS Genet	Genome wide analysis of narcolepsy in China implicates novel immune loci and reveals changes in association prior to versus after the 2009 H1N1 influenza pandemic.	Narcolepsy (age of onset)	at least 1,000 Chinese ancestry cases	NA	6p21.32	NR	rs17212223-T	0.191	3E-8		1.95	year decrease	Affymetrix [603382]	N
614	chr6_dbb_hap3	3927224	3927225	rs9275152	31660654	Bandres-Ciga S	2019-10-29	Mov Disord	The Genetic Architecture of Parkinson Disease in Spain: Characterizing Population-Specific Risk, Differential Haplotype Structures, and Providing Etiologic Insight.	Parkinson's disease	4,639 Spanish ancestry cases, 2,949 Spanish ancestry controls	NA	6p21.32	HLA-DQB1	rs9275152-C	0.08263	2E-8		0.376551	[0.25-0.51] unit decrease	Illumina [9911207] (imputed)	N
614	chr6_dbb_hap3	3927306	3927307	rs3104361	33204752	Butler-Laporte G	2020-09-24	Open Forum Infect Dis	Genetic Determinants of Antibody-Mediated Immune Responses to Infectious Diseases Agents: A Genome-Wide and HLA Association Study.	Helicobacter pylori OMP antibody levels	2,640 White British ancestry individuals	NA	6p21.32	HLA-DQB1	rs3104361-T	0.418	7E-10		0.18	[0.12-0.24] unit decrease	NR [25472218] (imputed)	N
614	chr6_dbb_hap3	3927352	3927353	rs7755224	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	6p21.32	NR	rs7755224-?	NR	5E-138	(conditional)			Affymetrix [15688218] (imputed)	N
614	chr6_dbb_hap3	3927394	3927395	rs3021058	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Automobile speeding propensity	404,291 European ancestry individuals	NA	6p21.32	HLA-DQB1	rs3021058-A	0.5386	4E-8		0.012403218	[0.008-0.0168] unit increase	Affymetrix [11514463] (imputed)	N
614	chr6_dbb_hap3	3927507	3927508	rs3021176	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hepatic cancer	379 European ancestry cases, 475,259 European ancestry controls, 2,122 East Asian ancestry cases, 159,201 East Asian ancestry controls	NA	6p21.32		rs3021176-A	NR	2E-9		0.2342	[0.16-0.31] unit increase	Affymetrix, Illumina [25843189] (imputed)	N
614	chr6_dbb_hap3	3927660	3927661	rs9275160	34431594	Atkins JL	2021-08-25	Aging Cell	A genome-wide association study of the frailty index highlights brain pathways in ageing.	Frailty index	175,226 European ancestry individuals	NA	6p21.32	HLA-DQB1, HLA-DQA2	rs9275160-A	0.3397	7E-28		0.0382	[0.031-0.045] unit increase	Affymetrix, Illumina [7666890] (imputed)	N
614	chr6_dbb_hap3	3927660	3927661	rs9275160	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	6p21.32	NR	rs9275160-A	NR	9E-8		1.044	[1.03-1.06]	Affymetrix, Illumina [29235255] (imputed)	N
614	chr6_dbb_hap3	3927826	3927827	rs28746950	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs28746950-A	0.172	4E-13	(Ubiquitin carboxyl-terminal hydrolase 25, USP25.9215.117.3)	0.27	[0.19-0.35] unit increase	Affymetrix [10572788] (imputed)	N
614	chr6_dbb_hap3	3927988	3927989	rs115712830	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28- CD4-CD8- T cell Absolute Count	3,408 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs115712830-C	0.15817	5E-8		0.2914	[0.19-0.4] unit decrease	Illumina [18340221] (imputed)	N
614	chr6_dbb_hap3	3929002	3929003	rs9275171	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	2,495 East Asian ancestry cases, 4,283 East Asian ancestry controls	NA	6p21.32		rs9275171-G	NR	5E-29		0.446594	[0.37-0.52] unit increase	NR [5275424] (imputed)	N
614	chr6_dbb_hap3	3929210	3929211	rs9275177	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	IgA nephropathy	1,180 East Asian ancestry cases, 899 East Asian ancestry controls	NA			rs9275177-T	NR	2E-6		0.362916	[0.21-0.51] unit increase	Illumina [NR] (imputed)	N
614	chr6_dbb_hap3	3929753	3929754	rs9275184	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	6p21.32	NR	rs9275184-C	0.1106	6E-24		0.0981	[0.079-0.117] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
614	chr6_dbb_hap3	3929861	3929862	rs2856687	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	6p21.32	NR	rs2856687-C	0.588689	2E-12		0.0486468	[0.035-0.062] unit decrease	Affymetrix [17914406] (imputed)	N
614	chr6_dbb_hap3	3930016	3930017	rs28747027	32573827	Huang YH	2020-06-23	Aliment Pharmacol Ther	Large-scale genome-wide association study identifies HLA class II variants associated with chronic HBV infection: a study from Taiwan Biobank.	Chronic hepatitis B infection	1,810 East Asian cases, 9,002 East Asian seropositive controls	648 East Asian cases, 3,190 East Asian seropositive controls	6p21.32	NR	rs28747027-G	0.4639	7E-21		1.41	[1.32-1.52]	Affymetrix [583383]	N
614	chr6_dbb_hap3	3930587	3930588	rs13194877	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs13194877-A	0.2	6E-9		4.48	[3.41-5.89]	Illumina [NR] (imputed)	N
614	chr6_dbb_hap3	3930769	3930770	rs3129783	33143745	Andlauer TFM	2020-11-04	BMC Med	Treatment- and population-specific genetic risk factors for anti-drug antibodies against interferon-beta: a GWAS.	Binding antibody response to interferon beta therapy in multiple sclerosis (antibody levels; IFN?-1a subcutaneous and intramuscular)	up to 2,000 German and Swedish ancestry individuals	up to 757 German and Swedish ancestry individuals	6p21.32		rs3129783-G	0.44	4E-19		0.3	[-0.24--0.36] unit decrease	Illumina [8550834] (imputed)	N
615	chr6_dbb_hap3	3939193	3939194	rs3129716	26316170	Demirci FY	2015-08-28	Arthritis Rheumatol	Identification of a New Susceptibility Locus for Systemic Lupus Erythematosus on Chromosome 12 in Individuals of European Ancestry.	Systemic lupus erythematosus	661 European ancestry cases, 487 European ancestry controls	4,467 European ancestry cases, 9,114 European ancestry controls	6p21.32	HLA-DQB1	rs3129716-?	NR	4E-9				Affymetrix [up to 700598]	N
615	chr6_dbb_hap3	3939301	3939302	rs4642516	30012571	Jia X	2018-07-16	J Am Soc Nephrol	Strong Association of the HLA-DR/DQ Locus with Childhood Steroid-Sensitive Nephrotic Syndrome in the Japanese Population.	Childhood steroid-sensitive nephrotic syndrome	224 Japanese ancestry cases, 412 Japanese ancestry controls	216 Japanese ancestry cases, 719 Japanese ancestry controls	6p21.32	HLA-DR, HLA-DQ	rs4642516-T	0.73	7E-13		3.030303	[2.44-3.85]	Affymetrix [4105543] (imputed)	N
615	chr6_dbb_hap3	3939336	3939337	rs7774434	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	8,021 European ancestry cases, 16,489 European ancestry controls, 2,495 East Asian ancestry cases, 4,283 East Asian ancestry controls	NA	6p21.32		rs7774434-C	NR	3E-116		0.462101	[0.42-0.5] unit increase	NR [2787054] (imputed)	N
615	chr6_dbb_hap3	3939336	3939337	rs7774434	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	8,021 European ancestry cases, 16,489 European ancestry controls	NA	6p21.32		rs7774434-C	NR	4E-104		0.470454	[0.43-0.51] unit increase	NR [5054572] (imputed)	N
615	chr6_dbb_hap3	3939336	3939337	rs7774434	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	MTCO3P1	rs7774434-C	NR	6E-9		0.0168538	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
615	chr6_dbb_hap3	3939336	3939337	rs7774434	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	MTCO3P1	rs7774434-C	NR	2E-8		0.0162768	[0.011-0.022] unit increase	Affymetrix [319769] (imputed)	N
615	chr6_dbb_hap3	3939336	3939337	rs7774434	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	MTCO3P1	rs7774434-C	NR	2E-10		0.0201596	[0.014-0.026] unit decrease	Affymetrix [323123] (imputed)	N
615	chr6_dbb_hap3	3939336	3939337	rs7774434	26394269	Cordell HJ	2015-09-22	Nat Commun	International genome-wide meta-analysis identifies new primary biliary cirrhosis risk loci and targetable pathogenic pathways.	Primary biliary cholangitis	2,764 European ancestry cases, 10,475 European ancestry controls	3,716 European ancestry cases,  4,261 European ancestry controls	6p21.32	MHC	rs7774434-C	0.47	2E-56		1.68	NR	Illumina [1143634] (imputed)	N
615	chr6_dbb_hap3	3939336	3939337	rs7774434	22961000	Liu JZ	2012-10-01	Nat Genet	Dense fine-mapping study identifies new susceptibility loci for primary biliary cirrhosis.	Primary biliary cirrhosis	2,861 British and Irish ancestry cases, 8,514 British and Irish ancestry controls	NA	6p21.32	HLA	rs7774434-C	0.38	1E-48		1.57		Illumina [237619] (imputed)	N
615	chr6_dbb_hap3	3939336	3939337	rs7774434	21399635	Mells GF	2011-03-13	Nat Genet	Genome-wide association study identifies 12 new susceptibility loci for primary biliary cirrhosis.	Primary biliary cholangitis	1,840 European ancestry cases, 5,163 European ancestry controls and (Liu et al)	620 European ancestry cases, 2,514 European ancestry controls	6p21.32	MHC	rs7774434-C	0.38	4E-34		1.6	[1.48-1.73]	Illumina [507467]	N
615	chr6_dbb_hap3	3939336	3939337	rs7774434	20639880	Liu X	2010-07-18	Nat Genet	Genome-wide meta-analyses identify three loci associated with primary biliary cirrhosis.	Primary biliary cholangitis	453 European ancestry cases, 945 European ancestry controls,	481 European ancestry cases, 3,706 European ancestry controls	6p21.32	HLA-DQB1	rs7774434-C	0.371	3E-26		1.75	[NR]	Illumina [276459]	N
615	chr6_dbb_hap3	3939578	3939579	rs9275210	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	MTCO3P1	rs9275210-T	NR	9E-9		0.0164099	[0.011-0.022] unit increase	Affymetrix [321114] (imputed)	N
615	chr6_dbb_hap3	3939675	3939676	rs7775055	23603761	Hinks A	2013-04-21	Nat Genet	Dense genotyping of immune-related disease regions identifies 14 new susceptibility loci for juvenile idiopathic arthritis.	Juvenile idiopathic arthritis (oligoarticular or rheumatoid factor-negative polyarticular)	2,816 European ancestry cases, 13,056 European ancestry controls	NA	6p21.32	HLA-DQA2, HLA-DQB1	rs7775055-G	0.02	3E-174	(dominant model)	6.01	[5.30-6.81]	Illumina [123003]	N
615	chr6_dbb_hap3	3939675	3939676	rs7775055	22936693	Juran BD	2012-08-29	Hum Mol Genet	Immunochip analyses identify a novel risk locus for primary biliary cirrhosis at 13q14, multiple independent associations at four established risk loci and epistasis between 1p31 and 7q32 risk variants.	Primary biliary cirrhosis	2,216 European ancestry cases, 5,594 Europen ancestry controls	NA	6p21.32	NR	rs7775055-C		1E-33		3.71	[3.00-4.59]	Illumina [109812]	N
615	chr6_dbb_hap3	3939838	3939839	rs7775228	33106546	Johnson TA	2020-10-26	J Hum Genet	Association of an IGHV3-66 gene variant with Kawasaki disease.	Kawasaki disease	1,276 East Asian ancestry cases, 5,086 East Asian ancestry controls	2,152 East Asian ancestry cases, 2,751 East Asian ancestry controls	6p21.32	HLA-DQB1	rs7775228-C	NR	7E-13		1.26	[1.19-1.35]	Affymetrix, Illumina [6265045] (imputed)	N
615	chr6_dbb_hap3	3939838	3939839	rs7775228	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.32	NR	rs7775228-?	NR	3E-6	(EA, C-C motif chemokine 19)			Affymetrix [509946]	N
615	chr6_dbb_hap3	3939838	3939839	rs7775228	25147954	Enroth S	2014-08-22	Nat Commun	Strong effects of genetic and lifestyle factors on biomarker variation and use of personalized cutoffs.	CCL19 levels	up to 653 individuals	up to 317 individuals	6p21.32	HLA-DQB1	rs7775228-C	0.16731	3E-13		0.51	[0.37-0.65] unit increase	Illumina [4840842] (imputed)	N
615	chr6_dbb_hap3	3939838	3939839	rs7775228	22036096	Ramasamy A	2011-11-01	J Allergy Clin Immunol	A genome-wide meta-analysis of genetic variants associated with allergic rhinitis and grass sensitization and their interaction with birth order.	IgE grass sensitization	2,315 European ancestry cases, 10,032 European ancestry controls	NA	6p21.32	HLA region	rs7775228-C	0.13	2E-9		1.33	[1.21-1.45]	Affymetrix, Illumina [2217510] (imputed)	N
615	chr6_dbb_hap3	3939838	3939839	rs7775228	21804548	Hirota T	2011-07-31	Nat Genet	Genome-wide association study identifies three new susceptibility loci for adult asthma in the Japanese population.	Asthma	1,532 Japanese ancestry cases, 3,304 Japanese ancestry controls	5,639 Japanese ancestry cases, 24,608 Japanese ancestry controls	6p21.32	HLA-DQB1	rs7775228-A	0.63	5E-15		1.17	[1.12-1.21]	Illumina [458847]	N
615	chr6_dbb_hap3	3940069	3940070	rs9469220	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	MTCO3P1	rs9469220-A	NR	5E-16		0.0228026	[0.017-0.028] unit increase	Affymetrix [319769] (imputed)	N
615	chr6_dbb_hap3	3940069	3940070	rs9469220	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	MTCO3P1	rs9469220-A	NR	9E-16		0.0226045	[0.017-0.028] unit increase	Affymetrix [319769] (imputed)	N
615	chr6_dbb_hap3	3940069	3940070	rs9469220	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	MTCO3P1	rs9469220-A	NR	5E-18		0.0246439	[0.019-0.03] unit increase	Affymetrix [321169] (imputed)	N
615	chr6_dbb_hap3	3940069	3940070	rs9469220	30230522	Zhang S	2018-09-19	Br J Dermatol	Subtype-Specific Inherited Predisposition to Pemphigus in Chinese Population.	Pemphigus vulgaris	255 Chinese ancestry cases, 501 Chinese ancestry controls	110 Chinese ancestry cases, 604 Chinese ancestry controls	6p21.32	NR	rs9469220-G	0.33	4E-19		3.36	NR	Affymetrix [416397]	N
615	chr6_dbb_hap3	3940069	3940070	rs9469220	30230522	Zhang S	2018-09-19	Br J Dermatol	Subtype-Specific Inherited Predisposition to Pemphigus in Chinese Population.	Pemphigus	350 Chinese ancestry cases, 501 Chinese ancestry controls	146 Chinese ancestry cases, 604 Chinese ancestry controls	6p21.32	NR	rs9469220-G	0.33	7E-22		3.2	NR	Affymetrix [416397]	N
615	chr6_dbb_hap3	3940069	3940070	rs9469220	23146381	Levin AM	2012-11-10	J Allergy Clin Immunol	A meta-analysis of genome-wide association studies for serum total IgE in diverse study populations.	IgE levels	2,469 African American individuals, 259 Latino individuals, 1,564 European ancestry individuals	2,961 African American individuals, 1,477 Latino individuals, 649 European ancestry individuals, 680 Hutterite individuals	6p21.32	HLA-DQB1	rs9469220-G	NR	2E-7		0.09	[0.05-0.12] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
615	chr6_dbb_hap3	3940069	3940070	rs9469220	17554300	Wellcome Trust Case Control Consortium	2007-06-07	Nature	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Crohn's disease	1,748 European ancestry cases, 2,938 European ancestry controls	(see Parkes 2007)	6p21.32	NR	rs9469220-A	0.48	2E-6		1.14	[0.98-1.32]	Affymetrix [469557]	N
615	chr6_dbb_hap3	3940448	3940449	rs34723256	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs34723256-A	0.059	4E-68	(conditional)	2.282	[2.19-2.37]	Illumina [11270530] (imputed)	N
615	chr6_dbb_hap3	3940468	3940469	rs2858330	31985003	Boocock J	2020-01-27	Hum Mol Genet	Genomic dissection of 43 serum urate-associated loci provides multiple insights into molecular mechanisms of urate control.	Urate levels	110,238 European ancestry individuals, 21,471 East Asian individuals	NA	6p21.32	HLA-DQB1	rs2858330-T		4E-8		0.027	[0.017-0.037] mg/dl increase	NR [NR] (imputed)	N
615	chr6_dbb_hap3	3940686	3940687	rs9275218	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	MTCO3P1	rs9275218-G	NR	1E-11		0.0205042	[0.015-0.026] unit increase	Affymetrix [321169] (imputed)	N
615	chr6_dbb_hap3	3941193	3941194	rs140068907	26891255	Jung ES	2016-02-18	Inflamm Bowel Dis	HLA-C*01 is a Risk Factor for Crohn's Disease.	Crohn's disease	275 Korean ancestry cases, 2,369 Korean ancestry controls	242 Korean ancestry cases, 1,066 Korean ancestry controls	6p21.32	HLA-DQB1, HLA-DQA2	rs140068907-C	0.08	1E-11		1.98	[1.62-2.41]	Affymetrix [3387207] (imputed)	N
615	chr6_dbb_hap3	3941266	3941267	rs9275222	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	MTCO3P1	rs9275222-T	NR	7E-11		0.0204278	[0.014-0.027] unit increase	Affymetrix [323858] (imputed)	N
615	chr6_dbb_hap3	3941266	3941267	rs9275222	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	MTCO3P1	rs9275222-T	NR	1E-9		0.0190432	[0.013-0.025] unit increase	Affymetrix [127266] (imputed)	N
615	chr6_dbb_hap3	3941395	3941396	rs2856674	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	MTCO3P1	rs2856674-G	NR	7E-14		0.0297899	[0.022-0.038] unit decrease	Affymetrix [321169] (imputed)	N
615	chr6_dbb_hap3	3941395	3941396	rs2856674	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling nervous	373,121 European ancestry individuals	NA	6p21.32	BRD2	rs2856674-A	0.144331	2E-10		6.41	z score increase	NR [10847151] (imputed)	N
615	chr6_dbb_hap3	3941395	3941396	rs2856674	23603763	Liu JZ	2013-06-01	Nat Genet	Dense genotyping of immune-related disease regions identifies nine new risk loci for primary sclerosing cholangitis.	Primary sclerosing cholangitis	3,789 European ancestry cases, 25,079 European ancestry controls	NA	6p21.32	HLA-DQA	rs2856674-?	NR	1E-6	(conditioned on rs4143332 + HLA-DQA*01:03 + rs532098 +rs1794282 + rs9263964)			Illumina [140322] (imputed)	N
615	chr6_dbb_hap3	3941580	3941581	rs3129718	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Hepatitis B	1,425 European ancestry cases, 218,180 European ancestry controls	NA	6p21.32	NR	rs3129718-?	NR	6E-6		0.3099	[0.17-0.45] unit decrease	Illumina [at least 560000] (imputed)	N
615	chr6_dbb_hap3	3941620	3941621	rs9275224	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	MTCO3P1	rs9275224-G	NR	1E-13		0.0208122	[0.015-0.026] unit increase	Affymetrix [319769] (imputed)	N
615	chr6_dbb_hap3	3941620	3941621	rs9275224	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	MTCO3P1	rs9275224-G	NR	1E-12		0.0199507	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
615	chr6_dbb_hap3	3941620	3941621	rs9275224	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	MTCO3P1	rs9275224-G	NR	5E-16		0.023055	[0.017-0.029] unit increase	Affymetrix [321169] (imputed)	N
615	chr6_dbb_hap3	3941620	3941621	rs9275224	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	6p21.32	HLA-DQB1, HLA-DQA1, HLA-DRB1	rs9275224-G	0.59	8E-14	(East Asian)	1.38		Illumina [> 1000000] (imputed)	N
615	chr6_dbb_hap3	3941620	3941621	rs9275224	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	6p21.32	HLA-DQB1, HLA-DQA1, HLA-DRB1	rs9275224-G	0.51	6E-30		1.36	[NR]	Illumina [> 1000000] (imputed)	N
615	chr6_dbb_hap3	3941620	3941621	rs9275224	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	6p21.32	HLA-DQB1, HLA-DQA1, HLA-DRB1	rs9275224-G	0.51	6E-18	(EA)	1.38	[NR]	Illumina [> 1000000] (imputed)	N
615	chr6_dbb_hap3	3941639	3941640	rs35472814	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs35472814-C	0.2	1E-8		4.23	[3.24-5.52]	Illumina [NR] (imputed)	N
615	chr6_dbb_hap3	3942324	3942325	rs2647006	30593799	Vergara C	2018-12-26	Gastroenterology	Multi-Ancestry Genome-Wide Association Study of Spontaneous Clearance of Hepatitis C Virus.	Hepatitis C (spontaneous viral clearance)	701 European ancestry cases, 1,035 European ancestry controls, 445 African American cases, 1,756 African American controls, 173 Hispanic ancestry cases, 313 Hispanic ancestry controls	NA	6p21.32	HLA-DQB1, HLA-DQA2	rs2647006-C	0.62	1E-21		1.79	NR (AA)	Illumina [15704341] (imputed)	N
615	chr6_dbb_hap3	3942459	3942460	rs9275239	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	MTCO3P1	rs9275239-A	NR	2E-20		0.0286392	[0.023-0.035] unit decrease	Affymetrix [323123] (imputed)	N
615	chr6_dbb_hap3	3942483	3942484	rs9275241	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs9275241-?	NR	2E-13				Affymetrix [~ 8270000] (imputed)	N
615	chr6_dbb_hap3	3942689	3942690	rs9275245	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (mother's age at death or mother's attained age)	up to 699,000 individuals	NA	6p21.32	NR	rs9275245-A		3E-6				Illumina [458525]	N
615	chr6_dbb_hap3	3943044	3943045	rs2858320	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	MTCO3P1	rs2858320-A	NR	9E-24		0.0285816	[0.023-0.034] unit decrease	Affymetrix [319769] (imputed)	N
615	chr6_dbb_hap3	3943044	3943045	rs2858320	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	MTCO3P1	rs2858320-A	NR	8E-23		0.0279496	[0.022-0.034] unit decrease	Affymetrix [319769] (imputed)	N
615	chr6_dbb_hap3	3943044	3943045	rs2858320	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	MTCO3P1	rs2858320-A	NR	9E-27		0.0308142	[0.025-0.036] unit decrease	Affymetrix [321169] (imputed)	N
615	chr6_dbb_hap3	3943044	3943045	rs2858320	33119750	Vergara C	2020-10-29	J Infect Dis	A multi-ancestry sex stratified genome-wide association study of spontaneous clearance of hepatitis C virus.	Hepatitis C (spontaneous viral clearance)	239 African ancestry male cases, 1,184 African ancestry male controls, 206 African ancestry female cases, 572 African ancestry female controls, 489 European ancestry male cases, 703 European ancestry male controls, 212 European ancestry female cases, 332 European ancestry female controls, 91 Hispanic male cases, 197 Hispanic male controls, 82 Hispanic female cases, 116 Hispanic female controls	NA	6p21.32	NR	rs2858320-G	0.58	2E-12	(female)	1.96	[NR]	Illumina [5730693] (imputed)	N
615	chr6_dbb_hap3	3943326	3943327	rs9275260	28698626	Lopez-Mejias R	2017-07-11	Sci Rep	A genome-wide association study suggests the HLA Class II region as the major susceptibility locus for IgA vasculitis.	Immunoglobulin A vasculitis	285 European ancestry cases, 1,006 European ancestry controls	NA	6p21.32	HLA-DQA1, HLA-DQB1	rs9275260-?		3E-9		1.7857143	[1.47-2.17]	Illumina [1909910] (imputed)	N
615	chr6_dbb_hap3	3944778	3944779	rs9275263	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic hepatitis C infection	273 European ancestry cases, 351,740 European ancestry controls, 7,110 East Asian ancestry cases, 169,588 East Asian ancestry controls	NA	6p21.32		rs9275263-G	NR	2E-12		0.1228	[0.088-0.157] unit decrease	Affymetrix, Illumina [20457788] (imputed)	N
615	chr6_dbb_hap3	3944859	3944860	rs9275267	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic hepatitis C infection	7,110 East Asian ancestry cases, 169,588 East Asian ancestry controls	NA	6p21.32		rs9275267-G	0.623579949	3E-12		0.1242382	[0.089-0.159] unit decrease	Illumina [13429570] (imputed)	N
615	chr6_dbb_hap3	3944967	3944968	rs9275271	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR++ monocyte Absolute Count	3,579 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9275271-C	0.62317	2E-14		0.2356	[0.18-0.3] unit increase	Illumina [18377365] (imputed)	N
615	chr6_dbb_hap3	3944980	3944981	rs9275272	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Prostate cancer	10,792 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs9275272-C	NR	2E-7		1.0948106	NR	Affymetrix [7846216] (imputed)	N
615	chr6_dbb_hap3	3945362	3945363	rs9275281	28373541	Yang J	2017-04-03	Proc Natl Acad Sci U S A	Genetic signatures of high-altitude adaptation in Tibetans.	High altitude adaptation	3,008 Tibetan (founder/genetic isolate) individuals and 7,287 East Asian individuals	NA	6p21.32	HLA-DQB1	rs9275281-G	0.365	1E-10				Illumina [7300000] (imputed)	N
615	chr6_dbb_hap3	3945363	3945364	rs114169440	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs114169440-A	0.2	2E-8		4.08	[3.13-5.31]	Illumina [NR] (imputed)	N
615	chr6_dbb_hap3	3945416	3945417	rs9275282	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs9275282-?	NR	1E-14				Affymetrix [~ 8270000] (imputed)	N
615	chr6_dbb_hap3	3945600	3945601	rs113523948	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs113523948-C	0.063	3E-21	(conditional)	0.578	[0.46-0.69]	Illumina [11270530] (imputed)	N
615	chr6_dbb_hap3	3945701	3945702	rs112927854	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Low density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	6p21.32	HLA-DQB1, HLA-DQA2	rs112927854-?		4E-9		0.0728	[0.049-0.097] unit decrease	Illumina [31500000] (imputed)	N
615	chr6_dbb_hap3	3945731	3945732	rs9275292	27286809	Ligthart S	2016-06-10	BMC Genomics	Bivariate genome-wide association study identifies novel pleiotropic loci for lipids and inflammation.	C-reactive protein levels or LDL-cholesterol levels (pleiotropy)	65,000 individuals (C-reactive protein), 95,454 individuals (LDL-cholesterol)	NA	6p21.32	HLA-DQB1	rs9275292-A	NR	3E-8				NR [2501749] (imputed)	N
615	chr6_dbb_hap3	3945839	3945840	rs13205804	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	6p21.32	intergenic	rs13205804-A	0.8815	3E-21		0.0391	[0.031-0.047] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
615	chr6_dbb_hap3	3946073	3946074	rs3129720	23472185	Mero IL	2013-03-05	PLoS One	Oligoclonal band status in Scandinavian multiple sclerosis patients is associated with specific genetic risk alleles.	Multiple sclerosis (OCB status)	1,367 European ancestry OCB positive cases, 161 European ancestry OCB negative cases, 428 European ancestry controls	NA	6p21.32	HLA-DQB1	rs3129720-?	NR	5E-15	(OCB positive vs. controls)	1.91	[1.62-2.24]	Illumina [495970]	N
615	chr6_dbb_hap3	3946073	3946074	rs3129720	22493691	Eriksson N	2012-04-06	PLoS One	Novel associations for hypothyroidism include known autoimmune risk loci.	Hypothyroidism	3,736 European ancestry cases, 35,546 European ancestry controls	NA	6p21.32	HLA-DQA2, HLA-DQB1, HLA-DRB9, HLA-DRB5, HLA-DRB1, HLA-DQA1	rs3129720-C	0.764	5E-7		1.16	(1.10-1.23)	Illumina [870065]	N
615	chr6_dbb_hap3	3946206	3946207	rs17427445	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs17427445-A	0.2	1E-8		4.23	[3.24-5.52]	Illumina [NR] (imputed)	N
615	chr6_dbb_hap3	3946294	3946295	rs6457617	31050781	Zhao SX	2019-05-03	JAMA Netw Open	Assessment of Molecular Subtypes in Thyrotoxic Periodic Paralysis and Graves Disease Among Chinese Han Adults: A Population-Based Genome-Wide Association Study.	Thyrotoxic hypokalemic periodic paralysis and Graves disease	171 Han Chinese ancestry cases, 2,160 Han Chinese ancestry controls	362 Han Chinese ancestry cases, 1,089 Han Chinese ancestry controls	6p21.32	HLA-DQB1, HLA-DQA2	rs6457617-?	0.47	2E-17		1.74	[1.53-1.97]	Illumina [2752055] (imputed)	N
615	chr6_dbb_hap3	3946294	3946295	rs6457617	25616667	Goris A	2015-01-22	Brain	Genetic variants are major determinants of CSF antibody levels in multiple sclerosis.	Immunoglobulin G index levels in multiple sclerosis	773 European ancestry Individuals, 165 Individuals	2,072 Individuals	6p21.32	HLA-DQA1	rs6457617-A	NR	7E-17		0.127	[NR] unit decrease	NR [485236]	N
615	chr6_dbb_hap3	3946294	3946295	rs6457617	21841780	Chu X	2011-08-14	Nat Genet	A genome-wide association study identifies two new risk loci for Graves' disease.	Graves' disease	1,468 Chinese ancestry cases, 1,490 Chinese ancestry controls	3,994 Chinese ancestry cases, 3,510 Chinese ancestry controls	6p21.32	HLA, DRB1, DQA1, DQB1	rs6457617-T	0.45	7E-33		1.4	[1.32-1.48]	Illumina [486049]	N
615	chr6_dbb_hap3	3946294	3946295	rs6457617	21750679	Allanore Y	2011-07-07	PLoS Genet	Genome-wide scan identifies TNIP1, PSORS1C1, and RHOB as novel risk loci for systemic sclerosis.	Systemic sclerosis	564 European ancestry cases, 1,776 European ancestry controls	1,682 European ancestry cases, 3,926 European ancestry controls	6p21.32	HLA, DQB1	rs6457617-T	0.50	2E-37		1.61	[1.49-1.72]	Illumina [489814]	N
615	chr6_dbb_hap3	3946294	3946295	rs6457617	20383147	Radstake TR	2010-04-11	Nat Genet	Genome-wide association study of systemic sclerosis identifies CD247 as a new susceptibility locus.	Systemic sclerosis	2,296 European ancestry cases, 5,171 European ancestry controls	2,753 European ancestry cases, 4,569 European ancestry controls	6p21.32	HLA-DQB1	rs6457617-?	0.53	4E-17		1.37	[1.28-1.47]	Illumina [279621]	N
615	chr6_dbb_hap3	3946294	3946295	rs6457617	18668548	Julia A	2008-08-01	Arthritis Rheum	Genome-wide association study of rheumatoid arthritis in the Spanish population: KLF12 as a risk locus for rheumatoid arthritis susceptibility.	Rheumatoid arthritis	400 European ancestry cases, 400 European ancestry controls	410 European ancestry cases, 394 European ancestry controls	6p21.32	HLA-DQA2, HLA-DQA1	rs6457617-?	NR	1E-9				Illumina [299918]	N
615	chr6_dbb_hap3	3946294	3946295	rs6457617	17554300	Wellcome Trust Case Control Consortium	2007-06-07	Nature	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Rheumatoid arthritis	1,860 European ancestry cases, 2,938 European ancestry controls	NA	6p21.32	MHC	rs6457617-T	0.49	5E-75		2.36	[1.97-2.84]	Affymetrix [469557]	N
615	chr6_dbb_hap3	3946379	3946380	rs34677551	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs34677551-C	0.2	1E-8		4.23	[3.24-5.52]	Illumina [NR] (imputed)	N
615	chr6_dbb_hap3	3946397	3946398	rs34392107	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	6p21.32	HLA-DQB1	rs34392107-G	0.883508	6E-45		0.0459707	[0.04-0.052] unit decrease	Affymetrix [NR] (imputed)	N
615	chr6_dbb_hap3	3946442	3946443	rs6457620	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	6p21.32	HLA locus	rs6457620-C	0.51	2E-16		0.029	[NR] unit decrease	Affymetrix, Illumina [2834208] (imputed)	N
615	chr6_dbb_hap3	3946442	3946443	rs6457620	18794853	Raychaudhuri S	2008-09-14	Nat Genet	Common variants at CD40 and other loci confer risk of rheumatoid arthritis.	Rheumatoid arthritis	3,393 European ancestry cases, 12,460 European ancestry controls	3,929 European ancestry cases, 5,807 European ancestry controls	6p21.32	HLA-DRB1	rs6457620-?	0.50	4E-186		2.55	[2.40-2.71]	Affymetrix, Illumina [at least 315971] (imputed)	N
615	chr6_dbb_hap3	3946481	3946482	rs35900855	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs35900855-G	0.2	1E-8		4.23	[3.24-5.52]	Illumina [NR] (imputed)	N
615	chr6_dbb_hap3	3946775	3946776	rs7745040	29534301	Nishida N	2018-03-13	Hepatology	Key HLA-DRB1-DQB1 haplotypes and role of the BTNL2 gene for response to a hepatitis B vaccine.	Response to hepatitis B vaccine	107 Japanese ancestry low responder individuals, 351 Japanese ancestry intermediate responder individuals, 735 Japanese ancestry high responder individuals	NA	6p21.32	HLA-DQA2	rs7745040-?		2E-10		0.162	unit decrease	Affymetrix [427664]	N
615	chr6_dbb_hap3	3946901	3946902	rs2647012	33649182	Penova M	2021-03-01	Proc Natl Acad Sci U S A	Genome wide association study of HTLV-1-associated myelopathy/tropical spastic paraparesis in the Japanese population.	HTLV-1 associated myelopathy	731 Japanese ancestry cases, 846 Japanese ancestry controls	NA	6p21.32		rs2647012-T	0.17	5E-7		0.56	[0.45-0.7]	Illumina [126394]	N
615	chr6_dbb_hap3	3946901	3946902	rs2647012	24925725	Chung SA	2014-06-12	J Am Soc Nephrol	Lupus nephritis susceptibility loci in women with systemic lupus erythematosus.	Lupus nephritis in systemic lupus erythematosus	588 European ancestry cases, 1,412 European ancestry controls	NA	6p21.32	intergenic	rs2647012-?	NR	3E-7	(Additive)	1.52	[1.3-1.75]	Affymetrix, Illumina [1621689] (imputed)	N
615	chr6_dbb_hap3	3946901	3946902	rs2647012	21533074	Smedby KE	2011-04-21	PLoS Genet	GWAS of follicular lymphoma reveals allelic heterogeneity at 6p21.32 and suggests shared genetic susceptibility with diffuse large B-cell lymphoma.	Follicular lymphoma	379 European ancestry cases, 791 European ancestry controls	1,049 European ancestry cases, 3,952 European ancestry controls	6p21.32	HLA-DQB1	rs2647012-G	0.56	2E-21		1.56	[1.43-1.72]	Illumina [298168]	N
615	chr6_dbb_hap3	3946901	3946902	rs2647012	21408207	Chung SA	2011-03-03	PLoS Genet	Differential genetic associations for systemic lupus erythematosus based on anti-dsDNA autoantibody production.	Systemic lupus erythematosus	811 anti-dsDNA positive European ancestry cases, 906 anti-dsDNA negative European ancestry cases, 4,813 European ancestry controls	NA	6p21.32	HLA-DQA2, HLA-DQA1	rs2647012-A	0.44	8E-6	(case-only)	1.38	[1.20-1.59]	Illumina [421318] (imputed)	N
615	chr6_dbb_hap3	3947071	3947072	rs115255544	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs115255544-G	0.2	1E-8		4.23	[3.24-5.52]	Illumina [NR] (imputed)	N
615	chr6_dbb_hap3	3947234	3947235	rs116303320	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Total cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	6p21.32	HLA-DQB1, HLA-DQA2	rs116303320-?		5E-13		0.0603	[0.044-0.077] unit decrease	Illumina [31500000] (imputed)	N
615	chr6_dbb_hap3	3947323	3947324	rs2647003	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.32	NR	rs2647003-?	NR	3E-13				Affymetrix [~ 8270000] (imputed)	N
615	chr6_dbb_hap3	3947403	3947404	rs9357152	21896673	Chen D	2011-09-10	Hum Mol Genet	Genome-wide association study of HPV seropositivity.	HPV seropositivity	1,286 European ancestry lung cancer cases, 679 European ancestry head and neck cancer cases, 811 European ancestry kidney cancer cases, 2,035 European ancestry controls	1,307 Hispanic head and neck cancer cases, 1,037 Hispanic controls		HLA-DQB1	rs9357152-G	0.33	1E-14				Illumina [316015]	N
615	chr6_dbb_hap3	3947558	3947559	rs17206126	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs17206126-T	0.972723	3E-12		0.087804	[0.063-0.112] unit decrease	NR [11722792] (imputed)	N
615	chr6_dbb_hap3	3947568	3947569	rs17212462	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs17212462-T	0.2	1E-8		4.23	[3.24-5.52]	Illumina [NR] (imputed)	N
615	chr6_dbb_hap3	3947693	3947694	rs17212483	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs17212483-T	0.2	9E-9		4.27	[3.27-5.58]	Illumina [NR] (imputed)	N
615	chr6_dbb_hap3	3947863	3947864	rs10484561	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs10484561-G	0.2	2E-8		4.22	[3.22-5.52]	Illumina [NR] (imputed)	N
615	chr6_dbb_hap3	3947863	3947864	rs10484561	20639881	Conde L	2010-07-18	Nat Genet	Genome-wide association study of follicular lymphoma identifies a risk locus at 6p21.32.	Follicular lymphoma	681 European ancestry cases, 750 European ancestry controls	up to 3,164 European ancestry cases, 6,208 European ancestry controls	6p21.32	HLA-DQB1	rs10484561-G	0.11	1E-29	(FL)	1.95	[1.72-2.22]	Illumina [312768]	N
615	chr6_dbb_hap3	3948130	3948131	rs17212553	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs17212553-T	0.2	1E-8		4.23	[3.24-5.52]	Illumina [NR] (imputed)	N
615	chr6_dbb_hap3	3948739	3948740	rs9275319	23242368	Jiang DK	2012-12-16	Nat Genet	Genetic variants in STAT4 and HLA-DQ genes confer risk of hepatitis B virus-related hepatocellular carcinoma.	Hepatocellular carcinoma in hepatitis B infection	1,161 Chinese ancestry cases, 1,353 Chinese ancestry controls	4,319 Chinese ancestry cases, 4,966 Chinese ancestry controls	6p21.32	HLA-DQ	rs9275319-A	0.88	3E-17		1.49	[1.36-1.63]	Illumina [1672517] (imputed)	N
615	chr6_dbb_hap3	3948970	3948971	rs1794282	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.32	BTNL2, XXbac-BPG246D15.9, XXbac-BPG154L12.5, XXbac-BPG154L12.4, C6orf10, HNRNPA1P2, RNU6-603P, HLA-DRA, HLA-DRB9, HLA-DOB	rs1794282-T	0.08080808	3E-19	(EA, MHC class I polypeptide-related sequence B)	0.7066	[0.56-0.86] unit decrease	Affymetrix [509946]	N
615	chr6_dbb_hap3	3949104	3949105	rs9275326	28892059	Chang D	2017-09-11	Nat Genet	A meta-analysis of genome-wide association studies identifies 17 new Parkinson's disease risk loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	5,851 European ancestry cases, 5,866 European ancestry controls	6p21.32	HLA-DRB6, HLA-DQA1	rs9275326-C	0.895	1E-13		1.1764705	[1.12-1.22]	Illumina [11933700] (imputed)	N
615	chr6_dbb_hap3	3949104	3949105	rs9275326	25064009	Nalls MA	2014-07-27	Nat Genet	Large-scale meta-analysis of genome-wide association data identifies six new risk loci for Parkinson's disease.	Parkinson's disease	13,708 European ancestry cases, 95,282 European ancestry controls	5,353 European ancestry cases, 5,551 European ancestry controls	6p21.32	HLA-DQB	rs9275326-C	0.906	1E-12		1.21	[1.16-1.26]	Illumina [7893274] (imputed)	N
615	chr6_dbb_hap3	3949511	3949512	rs17427564	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs17427564-C	0.2	1E-8		4.23	[3.24-5.52]	Illumina [NR] (imputed)	N
615	chr6_dbb_hap3	3949551	3949552	rs9275334	26272072	Jiang X	2015-08-13	Rheumatology (Oxford)	An Immunochip-based interaction study of contrasting interaction effects with smoking in ACPA-positive versus ACPA-negative rheumatoid arthritis.	ACPA-positive rheumatoid arthritis (smoking interaction)	340 European ancestry never-smoker cases, 493 European ancestry ever-smoker cases, 746 European ancestry never-smoker controls, 994 European ancestry ever-smoker controls	187 European ancestry never-smoker cases, 421 European ancestry ever-smoker cases, 461 European ancestry never-smoker controls, 447 European ancestry ever-smoker controls	6p21.32	NR	rs9275334-?	NR	2E-6	(adjusted for HLA shared epitope)	1.724138	[1.22-2.94]	Illumina [133648] (imputed)	N
615	chr6_dbb_hap3	3949615	3949616	rs1794280	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hyperthyroidism	3,557 European ancestry cases, 456,942 European ancestry controls, 994 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	6p21.32		rs1794280-T	NR	2E-44		0.5463	[0.47-0.62] unit increase	Affymetrix, Illumina [25841580] (imputed)	N
615	chr6_dbb_hap3	3949615	3949616	rs1794280	30854688	Wang C	2019-03-10	Hepatology	Genome Wide Association Studies of Specific Antinuclear Autoantibody Sub-phenotypes in Primary Biliary Cholangitis.	Anti-sp100 seropositivity in primary biliary cholangitis	211 Han Chinese ancestry cases, 711 Han Chinese ancestry controls	234 Han Chinese ancestry cases, 1,018 Han Chinese ancestry controls	6p21.32	NR	rs1794280-T	0.181	6E-28		3.89	[3.05-4.96]	Illumina [794531]	N
615	chr6_dbb_hap3	3949808	3949809	rs17427599	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (anti-inflammatory and antirheumatic products, non-steroids)	29,694 East Asian ancestry cases, 149,032 East Asian ancestry controls	NA	6p21.32		rs17427599-T	0.278563857	1E-13		0.07483624	[0.055-0.095] unit increase	Illumina [13429980] (imputed)	N
615	chr6_dbb_hap3	3949917	3949918	rs1794514	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Autoimmune hepatitis	821 European ancestry cases, 484,413 European ancestry controls, 85 East Asian ancestry cases, 166,529 East Asian ancestry controls	NA	6p21.32		rs1794514-C	NR	6E-14		0.5013	[0.37-0.63] unit increase	Affymetrix, Illumina [25843756] (imputed)	N
615	chr6_dbb_hap3	3949950	3949951	rs188230545	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	124,341 East Asian ancestry individuals	NA	6p21.32		rs188230545-T	0.154874	1E-8		0.0301327	[0.02-0.04] unit increase	Illumina [13476323] (imputed)	N
615	chr6_dbb_hap3	3949964	3949965	rs3104394	32534018	Liu X	2020-06-10	Brain Behav Immun	Genetic factors underlying the bidirectional relationship between autoimmune and mental disorders - findings from a Danish population-based study.	Autoimmune traits	1,383 Danish ancestry cases, 62,656 Danish ancestry controls	NA	6p21.32	NR	rs3104394-G	0.16	3E-20		0.57	[0.50-0.65]	NR [7721839] (imputed)	N
615	chr6_dbb_hap3	3950039	3950040	rs2133037	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	IgG levels	15,536 Icelandic ancestry individuals	2,158 Swedish ancestry individuals	6p21.32	HLA-DQB1	rs2133037-A	0.0524	2E-14		0.19	NR SD units decrease	Illumina [21568490] (imputed)	N
615	chr6_dbb_hap3	3950106	3950107	rs9275349	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	Systemic lupus erythematosus	1,639 East Asian ancestry cases, 2,410 East Asian ancestry controls	NA			rs9275349-C	NR	5E-25		0.5726	[0.46-0.68] unit decrease	Illumina [NR] (imputed)	N
615	chr6_dbb_hap3	3950184	3950185	rs2856723	28921602	Lee MH	2017-09-16	Hepatology	Human leukocyte antigen variants and risk of hepatocellular carcinoma modified by hepatitis C virus genotypes: A genome-wide association study.	Hepatocellular carcinoma in hepatitis C infection	502 Chinese ancestry cases, 749 Chinese ancestry controls	669 Chinese ancestry cases, 429 Chinese ancestry controls	6p21.32	HLA-DQB1	rs2856723-?		3E-43		2.68	[2.32-3.09]	Affymetrix [576032]	N
615	chr6_dbb_hap3	3950317	3950318	rs9275358	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p21.32	HLA-DQB1	rs9275358-G	0.475	3E-7		0.083	[0.052-0.114] unit decrease	Affymetrix, Illumina [7374092] (imputed)	N
615	chr6_dbb_hap3	3950332	3950333	rs2647044	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	6p21.32	BRD2, BTNL2, C6orf10, HCG23, HLA-DMA, HLA-DMB, HLA-DOA, HLA-DOB, HLA-DPA1, HLA-DQA1, HLA-DQA2, HLA-DQB1, HLA-DQB2, HLA-DRA, HLA-DRB1, HLA-DRB5, HLA-DRB6, LOC100294145, NOTCH4, PSMB8, PSMB9, TAP1, TAP2, TAPSAR1	rs2647044-A	0.14736	4E-15		1.1522182	[1.12-1.19]	Affymetrix [8274727] (imputed)	N
615	chr6_dbb_hap3	3950332	3950333	rs2647044	21946350	Soler Artigas M	2011-09-25	Nat Genet	Genome-wide association and large-scale follow up identifies 16 new loci influencing lung function.	Pulmonary function	48,201 European ancestry individuals	46,411 European ancestry individuals	6p21.32	HLA-DQB1	rs2647044-G	NR	6E-6	(FEV1/FVC)	0.044	[0.024-0.064] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
615	chr6_dbb_hap3	3950332	3950333	rs2647044	17632545	Hakonarson H	2007-07-15	Nature	A genome-wide association study identifies KIAA0350 as a type 1 diabetes gene.	Type 1 diabetes	467 European ancestry trios, 561 European ancestry cases, 1,143 European ancestry controls	390 European ancestry trios, 1,333 European ancestry cases from 549 families	6p21.32	HLA-DRB1	rs2647044-A	0.13	1E-16		8.3	[6.97-9.89]	Illumina [543071]	N
615	chr6_dbb_hap3	3950386	3950387	rs36030018	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs36030018-C	0.109	3E-36	(conditional)	1.586	[1.51-1.66]	Illumina [11270530] (imputed)	N
615	chr6_dbb_hap3	3950453	3950454	rs2856721	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	6p21.32		rs2856721-C	0.467255784	1E-9		0.056245904	[0.038-0.074] unit decrease	Illumina [13429769] (imputed)	N
615	chr6_dbb_hap3	3950453	3950454	rs2856721	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	46,511 Asian ancestry cases, 169,776 Asian ancestry controls	NA	6p21.32	NR	rs2856721-C	0.4659	5E-10		0.0572	[0.039-0.075] unit decrease	Affymetrix, Illumina [1077427] (imputed)	N
615	chr6_dbb_hap3	3950523	3950524	rs2647045	23349640	Vijai J	2013-01-17	PLoS Genet	Susceptibility loci associated with specific and shared subtypes of lymphoid malignancies.	Lymphoma	275 Follicular non-Hodgkin's Lymphoma cases, 269 diffuse large B-cell non-Hodgkin's Lymphoma cases, 198 other non-Hodgkin's Lymphoma cases, 202 Hodgkin's Lymphoma cases, 4,044 controls	202 European ancestry Follicular non-Hodgkin's Lymphoma cases, 367 European ancestry diffuse large B-cell non-Hodgkin's Lymphoma cases, 577 European ancestry other non-Hodgkin's Lymphoma cases, 99 European ancestry Hodgkin's Lymphoma cases, 2,596 European ancestry controls	6p21.32	HLA-DQA2, HLA-DQB1	rs2647045-?	NR	4E-10	(FL)	1.69	[NR]	Affymetrix [530583]	N
615	chr6_dbb_hap3	3950746	3950747	rs2858310	27286809	Ligthart S	2016-06-10	BMC Genomics	Bivariate genome-wide association study identifies novel pleiotropic loci for lipids and inflammation.	C-reactive protein levels or total cholesterol levels (pleiotropy)	65,000 individuals (C-reactive protein), 100,184 individuals (total cholesterol)	NA	6p21.32	HLA-DQB1	rs2858310-A	NR	4E-12				NR [2501549] (imputed)	N
615	chr6_dbb_hap3	3950759	3950760	rs2647046	23349640	Vijai J	2013-01-17	PLoS Genet	Susceptibility loci associated with specific and shared subtypes of lymphoid malignancies.	Lymphoma	275 Follicular non-Hodgkin's Lymphoma cases, 269 diffuse large B-cell non-Hodgkin's Lymphoma cases, 198 other non-Hodgkin's Lymphoma cases, 202 Hodgkin's Lymphoma cases, 4,044 controls	202 European ancestry Follicular non-Hodgkin's Lymphoma cases, 367 European ancestry diffuse large B-cell non-Hodgkin's Lymphoma cases, 577 European ancestry other non-Hodgkin's Lymphoma cases, 99 European ancestry Hodgkin's Lymphoma cases, 2,596 European ancestry controls	6p21.32	HLA-DQA2, HLA-DQB1	rs2647046-?	NR	2E-6	(NHL)	1.25	[1.14-1.37]	Affymetrix [530583]	N
615	chr6_dbb_hap3	3950862	3950863	rs3135002	29404672	Roshandel D	2018-02-05	Diabetologia	Meta-genome-wide association studies identify a locus on chromosome 1 and multiple variants in the MHC region for serum C-peptide in type 1 diabetes.	Random C-peptide levels in type I diabetes	1,497 European ancestry individuals	NA	6p21.32	MHC	rs3135002-A	0.03	3E-8				Illumina [8320327] (imputed)	N
615	chr6_dbb_hap3	3950862	3950863	rs3135002	29404672	Roshandel D	2018-02-05	Diabetologia	Meta-genome-wide association studies identify a locus on chromosome 1 and multiple variants in the MHC region for serum C-peptide in type 1 diabetes.	C-peptide levels in type I diabetes	3,479 European ancestry individuals	NA	6p21.32	MHC	rs3135002-A	0.03	7E-8				Illumina [7988630] (imputed)	N
615	chr6_dbb_hap3	3951441	3951442	rs1612904	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of HDL particles	115,082 European ancestry individuals	NA	6p21.32		rs1612904-C	0.38135	1E-10		0.0256884	[0.018-0.033] unit decrease	NR [11722792] (imputed)	N
615	chr6_dbb_hap3	3951441	3951442	rs1612904	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Perceived unattractiveness to mosquitoes	16,576 European ancestry individuals	NA	6p21.32	intergenic	rs1612904-C	NR	1E-8		0.136111	[0.089-0.183] unit increase	Illumina [7433384] (imputed)	N
615	chr6_dbb_hap3	3951441	3951442	rs1612904	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.32	Intergenic	rs1612904-C	NR	1E-13		0.0245272	[0.018-0.031] unit increase	Illumina [13520550] (imputed)	N
615	chr6_dbb_hap3	3951579	3951580	rs9275390	21779181	Gorlova O	2011-07-14	PLoS Genet	Identification of novel genetic markers associated with clinical phenotypes of systemic sclerosis through a genome-wide association strategy.	Systemic sclerosis	2,296 European ancestry cases, 5,172 European ancestry controls	3,175 European ancestry cases, 4,210 European ancestry controls	6p21.32	HLA-DQB1	rs9275390-?	0.75	1E-7	(ATA positive)	1.61	[1.35-1.92]	Illumina [NR] (imputed)	N
615	chr6_dbb_hap3	3951579	3951580	rs9275390	21779181	Gorlova O	2011-07-14	PLoS Genet	Identification of novel genetic markers associated with clinical phenotypes of systemic sclerosis through a genome-wide association strategy.	Systemic sclerosis	2,296 European ancestry cases, 5,172 European ancestry controls	3,175 European ancestry cases, 4,210 European ancestry controls	6p21.32	HLA-DQB1	rs9275390-?	0.25	3E-54	(ACA positive)	2.38	[2.13-2.67]	Illumina [NR] (imputed)	N
615	chr6_dbb_hap3	3951795	3951796	rs11752643	31213470	Moon JY	2019-06-18	Diabetes Care	A Genome-Wide Association Study Identifies Blood Disorder-Related Variants Influencing Hemoglobin A1c With Implications for Glycemic Status in U.S. Hispanics/Latinos.	Glycated hemoglobin levels	9,636 Hispanic/Latino individuals	4,777 Hispanic/Latino individuals	6p21.32	HLA-DQA2	rs11752643-T	0.017	2E-6		0.096	[0.061-0.131] % increase	Illumina [11510031] (imputed)	N
615	chr6_dbb_hap3	3951795	3951796	rs11752643	21971053	Takeuchi F	2011-10-05	Eur J Hum Genet	Genome-wide association study of coronary artery disease in the Japanese.	Coronary heart disease	806 Japanese ancestry cases, 1,337 Japanese ancestry controls	3,593 Japanese ancestry cases, 6,335 Japanese ancestry controls	6p21.32	HLA, DRB-DQB	rs11752643-T	0.06	5E-7		1.26	[1.15-1.38]	Illumina [451382]	N
615	chr6_dbb_hap3	3952189	3952190	rs2647050	26030696	Cho MH	2015-06-01	Am J Respir Crit Care Med	A Genome-Wide Association Study of Emphysema and Airway Quantitative Imaging Phenotypes.	Emphysema imaging phenotypes	5,385 European ancestry chronic obstructive pulmonary disease cases, 901 African American chronic obstructive pulmonary disease cases, 3,613 European ancestry controls, 2,132 African American controls	NA	6p21.32	HLA-DQB1	rs2647050-T	NR	1E-6	(Perc15, All)	1.6	[0.66-2.54] unit increase	Illumina [7600000] (imputed)	N
615	chr6_dbb_hap3	3952377	3952378	rs9275406	23918589	Negi S	2013-12-01	Arthritis Rheum	A genome-wide association study reveals ARL15, a novel non-HLA susceptibility gene for rheumatoid arthritis in North Indians.	Rheumatoid arthritis	706 North Indian ancestry cases, 761 North Indian ancestry controls	927 North Indian ancestry cases, 1,148 North Indian ancestry controls	6p21.32	HLA-DQA2, HLA-DQB1, C6orf10, HLA-DQA1	rs9275406-T	0.17	3E-12		2.1	[1.72-2.68]	Illumina [559348]	N
615	chr6_dbb_hap3	3952558	3952559	rs3135001	32276964	Shete S	2020-04-10	Cancer Res	A genome-wide association study identifies two novel susceptible regions for squamous cell carcinoma of the head and neck.	Head and neck squamous cell carcinoma	2,171 European ancestry cases, 4,493 European ancestry controls	5,205 European ancestry cases, 3,232 European ancestry controls	6p21.32	HLA-DQB1	rs3135001-C	0.79	1E-16		1.2987013	[1.22-1.37]	Illumina [7858089] (imputed)	N
615	chr6_dbb_hap3	3952669	3952670	rs2856718	25802187	Jiang DK	2015-04-28	Hepatology	Genetic variants in five novel loci including CFB and CD40 predispose to chronic hepatitis B.	Chronic hepatitis B infection	2,514 Chinese ancestry cases, 1,130 Chinese ancestry controls	6,600 Chinese ancestry cases, 8,127 Chinese ancestry controls	6p21.32	HLA-DQB1	rs2856718-C	0.55	7E-28		1.28	[1.22-1.33]	Illumina [3680900] (imputed)	N
615	chr6_dbb_hap3	3952669	3952670	rs2856718	23760081	Kim YJ	2013-06-10	Hum Mol Genet	A genome-wide association study identified new variants associated with the risk of chronic hepatitis B.	Chronic hepatitis B infection	400 Korean ancestry cases, 1,000 Korean ancestry controls	971 Korean ancestry cases, 1,938 Korean ancestry controls	6p21.32	HLA-DQ	rs2856718-?	NR	2E-24		1.6	[1.46-1.75]	Illumina [719265]	N
615	chr6_dbb_hap3	3952669	3952670	rs2856718	21750111	Mbarek H	2011-07-12	Hum Mol Genet	A genome-wide association study of chronic hepatitis B identified novel risk locus in a Japanese population.	Hepatitis B	458 Japanese ancestry cases, 2,056 Japanese ancestry controls	2,209 Japanese ancestry cases, 4,440 Japanese ancestry controls	6p21.32	HLA-DQB1	rs2856718-A	0.48	4E-37		1.56	[1.45-1.67]	Illumina [423627]	N
615	chr6_dbb_hap3	3952722	3952723	rs2856717	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	6p21.32	HLA-DQB1, HLA-DQA1, HLA-DRB1	rs2856717-G	0.77	5E-10	(East Asian)	1.38	[NR]	Illumina [> 1000000] (imputed)	N
615	chr6_dbb_hap3	3952722	3952723	rs2856717	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	6p21.32	HLA-DQB1, HLA-DQA1, HLA-DRB1	rs2856717-G	0.62	5E-8	(EA)	1.21	[NR]	Illumina [> 1000000] (imputed)	N
615	chr6_dbb_hap3	3952722	3952723	rs2856717	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	6p21.32	HLA-DQB1, HLA-DQA1, HLA-DRB1	rs2856717-G	0.62	1E-15		1.27	[NR]	Illumina [> 1000000] (imputed)	N
615	chr6_dbb_hap3	3953247	3953248	rs34492195	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs34492195-A	0.2	1E-8		4.23	[3.24-5.52]	Illumina [NR] (imputed)	N
615	chr6_dbb_hap3	3953311	3953312	rs2647051	30593799	Vergara C	2018-12-26	Gastroenterology	Multi-Ancestry Genome-Wide Association Study of Spontaneous Clearance of Hepatitis C Virus.	Hepatitis C (spontaneous viral clearance)	701 European ancestry cases, 1,035 European ancestry controls	NA	6p21.32	HLA-DQB1, HLA-DQA2	rs2647051-C	0.64	1E-9		1.79	NR	Illumina [8968220] (imputed)	N
615	chr6_dbb_hap3	3953392	3953393	rs9275428	28706201	Wei WH	2017-07-13	Sci Rep	Genotypic variability based association identifies novel non-additive loci DHCR7 and IRF4 in sero-negative rheumatoid arthritis.	Sero-negative rheumatoid arthritis	3,323 European ancestry cases, 15,785 European ancestry controls	NA	6p21.32	HLA-DQB1	rs9275428-?	NR	2E-24				Illumina [107144]	N
615	chr6_dbb_hap3	3953517	3953518	rs13192471	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Non-melanoma skin cancer	5,912 European ancestry cases, 181,740 European ancestry controls		6p21.32	NR	rs13192471-T	NR	7E-8		1.1493434	[1.09-1.21]	Affymetrix [5734850] (imputed)	N
615	chr6_dbb_hap3	3953517	3953518	rs13192471	20453841	Kochi Y	2010-05-09	Nat Genet	A regulatory variant in CCR6 is associated with rheumatoid arthritis susceptibility.	Rheumatoid arthritis	2,303 Japanese ancestry cases, 3,380 Japanese ancestry controls	4,768 Japanese ancestry cases, 17,359 Japanese ancestry controls	6p21.32	HLA-DRB1	rs13192471-G	0.22	2E-58		1.97	[1.82-2.14]	Illumina [393217]	N
615	chr6_dbb_hap3	3953621	3953622	rs1794511	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	IgD on IgD+ CD24+ B cell	3,656 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs1794511-G	0.25863	7E-13		0.2439	[0.18-0.31] unit decrease	Illumina [18238197] (imputed)	N
615	chr6_dbb_hap3	3953662	3953663	rs1794275	22197929	Yu XQ	2011-12-25	Nat Genet	A genome-wide association study in Han Chinese identifies multiple susceptibility loci for IgA nephropathy.	IgA nephropathy	1,434 Han Chinese ancestry cases, 4,270 Han Chinese ancestry controls	2,703 Han Chinese ancestry cases, 3,464 Han Chinese ancestry controls	6p21.32	HLA-DQA/B	rs1794275-A	0.15	3E-13		1.3	[1.21-1.39]	Illumina [444882]	N
615	chr6_dbb_hap3	3954386	3954387	rs6907732	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on CD33dim HLA DR+ CD11b+	1,634 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs6907732-G	0.45576	3E-8		0.2461	[0.16-0.33] unit increase	Illumina [16998734] (imputed)	N
615	chr6_dbb_hap3	3954501	3954502	rs3134995	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	6p21.32	HLA-DQB1, HLA-DQA2	rs3134995-T	0.242	4E-26		0.0648904	[0.053-0.077] unit decrease	Illumina [13520550] (imputed)	N
615	chr6_dbb_hap3	3955051	3955052	rs9275477	34873335	van Rheenen W	2021-12-06	Nat Genet	Common and rare variant association analyses in amyotrophic lateral sclerosis identify 15 risk loci with distinct genetic architectures and neuron-specific biology.	Amyotrophic lateral sclerosis	27,205 European ancestry cases, 110,881 European ancestry controls, 2,407 East Asian ancestry cases, 11,775 East Asian ancestry controls	NA			rs9275477-C	NR	4E-12		0.142	[0.1-0.18] unit decrease	Illumina [10461755] (imputed)	N
615	chr6_dbb_hap3	3955051	3955052	rs9275477	34873335	van Rheenen W	2021-12-06	Nat Genet	Common and rare variant association analyses in amyotrophic lateral sclerosis identify 15 risk loci with distinct genetic architectures and neuron-specific biology.	Amyotrophic lateral sclerosis	27,205 European ancestry cases, 110,881 European ancestry controls	NA	6p21.32		rs9275477-C	0.096	6E-12		0.143	[0.1-0.18] unit decrease	Illumina [10461755] (imputed)	N
615	chr6_dbb_hap3	3955984	3955985	rs9275495	26272072	Jiang X	2015-08-13	Rheumatology (Oxford)	An Immunochip-based interaction study of contrasting interaction effects with smoking in ACPA-positive versus ACPA-negative rheumatoid arthritis.	ACPA-positive rheumatoid arthritis (smoking interaction)	340 European ancestry never-smoker cases, 493 European ancestry ever-smoker cases, 746 European ancestry never-smoker controls, 994 European ancestry ever-smoker controls	187 European ancestry never-smoker cases, 421 European ancestry ever-smoker cases, 461 European ancestry never-smoker controls, 447 European ancestry ever-smoker controls	6p21.32	NR	rs9275495-?	NR	2E-6	(adjusted for HLA shared epitope)	1.724138	[1.22-2.94]	Illumina [133648] (imputed)	N
615	chr6_dbb_hap3	3956136	3956137	rs9275497	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6p21.32	MTCO3P1	rs9275497-G	0.239038	1E-18		0.025688766	[0.02-0.031] unit increase	Affymetrix [93095623] (imputed)	N
615	chr6_dbb_hap3	3956636	3956637	rs35332745	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs35332745-C	0.2	2E-8		4.11	[3.16-5.35]	Illumina [NR] (imputed)	N
615	chr6_dbb_hap3	3956740	3956741	rs9275511	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Adult onset asthma or type 2 diabetes	33,418 European ancestry asthma cases, 393,186 European ancestry asthma controls, 159,208 European ancestry diabetes cases and controls	NA	6p21.32	NR	rs9275511-?	NR	4E-18				Affymetrix [up to 8270000] (imputed)	N
615	chr6_dbb_hap3	3957054	3957055	rs9275516	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs9275516-A	0.48	1E-8		0.18	[0.13-0.25]	Illumina [NR] (imputed)	N
615	chr6_dbb_hap3	3957136	3957137	rs17206287	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs17206287-A	0.858	2E-12		1.2	[1.15-1.25]	Illumina [11270530] (imputed)	N
615	chr6_dbb_hap3	3957148	3957149	rs1794265	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	NR	rs1794265-C	0.945894807901907	8E-6	(IGP1)	0.3014	[0.17-0.43] unit decrease	Illumina [~ 2500000] (imputed)	N
615	chr6_dbb_hap3	3957148	3957149	rs1794265	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	NR	rs1794265-C	0.945736455079007	1E-6	(IGP19)	0.3272	[0.2-0.46] unit decrease	Illumina [~ 2500000] (imputed)	N
615	chr6_dbb_hap3	3957148	3957149	rs1794265	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	NR	rs1794265-C	0.945425811930783	3E-7	(IGP41)	0.3448	[0.21-0.48] unit decrease	Illumina [~ 2500000] (imputed)	N
615	chr6_dbb_hap3	3957477	3957478	rs17206350	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	MTCO3P1	rs17206350-C	NR	9E-9		0.0179759	[0.012-0.024] unit increase	Affymetrix [323858] (imputed)	N
615	chr6_dbb_hap3	3957477	3957478	rs17206350	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	MTCO3P1	rs17206350-C	NR	4E-8		0.0171917	[0.011-0.023] unit increase	Affymetrix [127266] (imputed)	N
615	chr6_dbb_hap3	3957477	3957478	rs17206350	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	MTCO3P1	rs17206350-C	NR	2E-8		0.0159877	[0.01-0.022] unit increase	Affymetrix [321114] (imputed)	N
615	chr6_dbb_hap3	3957519	3957520	rs9275524	25608926	Betz RC	2015-01-22	Nat Commun	Genome-wide meta-analysis in alopecia areata resolves HLA associations and reveals two new susceptibility loci.	Alopecia areata	2,332 European ancestry cases and 5,233 European ancestry controls	764 European ancestry cases and 2,256 European ancestry controls	6p21.32	HLA-DQB1	rs9275524-C	NR	2E-60		1.92		Illumina [1233578] (imputed)	N
615	chr6_dbb_hap3	3957519	3957520	rs9275524	23453885	Smoller JW	2013-02-27	Lancet	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NA	6p21.32	intergenic	rs9275524-T		2E-7	(Modelling analysis)	1.07	[1.04-1.09]	NR [1252901] (imputed)	N
615	chr6_dbb_hap3	3957880	3957881	rs12525220	24782177	Jiang L	2014-05-01	Arthritis Rheumatol	Novel risk loci for rheumatoid arthritis in Han Chinese and congruence with risk variants in Europeans.	Rheumatoid arthritis	433 Han Chinese ancestry ACPA positive cases, 519 Han Chinese ancestry ACPA negative cases, 943 Han Chinese ancestry controls	1,032 Han Chinese ancestry ACPA positive cases, 1,100 Han Chinese ancestry ACPA negative cases, 2,553 Han Chinese ancestry controls	6p21.32	HLA-DQA2, MHC, HLA-DQB1	rs12525220-A	0.057	7E-14	(ACPA+ cases vs. all controls)	3.015	[NR]	Affymetrix [3441843] (imputed)	N
615	chr6_dbb_hap3	3957880	3957881	rs12525220	24782177	Jiang L	2014-05-01	Arthritis Rheumatol	Novel risk loci for rheumatoid arthritis in Han Chinese and congruence with risk variants in Europeans.	Rheumatoid arthritis	433 Han Chinese ancestry ACPA positive cases, 519 Han Chinese ancestry ACPA negative cases, 943 Han Chinese ancestry controls	1,032 Han Chinese ancestry ACPA positive cases, 1,100 Han Chinese ancestry ACPA negative cases, 2,553 Han Chinese ancestry controls	6p21.32	HLA-DQA2, MHC, HLA-DQB1	rs12525220-A	0.057	3E-12	(all cases vs. all controls)	2.608	[NR]	Affymetrix [3441843] (imputed)	N
615	chr6_dbb_hap3	3957880	3957881	rs12525220	24782177	Jiang L	2014-05-01	Arthritis Rheumatol	Novel risk loci for rheumatoid arthritis in Han Chinese and congruence with risk variants in Europeans.	Rheumatoid arthritis	433 Han Chinese ancestry ACPA positive cases, 519 Han Chinese ancestry ACPA negative cases, 943 Han Chinese ancestry controls	1,032 Han Chinese ancestry ACPA positive cases, 1,100 Han Chinese ancestry ACPA negative cases, 2,553 Han Chinese ancestry controls	6p21.32	HLA-DQA2, MHC, HLA-DQB1	rs12525220-A	0.057	2E-13	(ACPA- cases vs. all controls)	2.869	[NR]	Affymetrix [3441843] (imputed)	N
615	chr6_dbb_hap3	3957933	3957934	rs9275530	26272072	Jiang X	2015-08-13	Rheumatology (Oxford)	An Immunochip-based interaction study of contrasting interaction effects with smoking in ACPA-positive versus ACPA-negative rheumatoid arthritis.	ACPA-positive rheumatoid arthritis (smoking interaction)	340 European ancestry never-smoker cases, 493 European ancestry ever-smoker cases, 746 European ancestry never-smoker controls, 994 European ancestry ever-smoker controls	187 European ancestry never-smoker cases, 421 European ancestry ever-smoker cases, 461 European ancestry never-smoker controls, 447 European ancestry ever-smoker controls	6p21.32	NR	rs9275530-?	NR	2E-6	(adjusted for HLA shared epitope)	1.724138	[1.23-2.94]	Illumina [133648] (imputed)	N
615	chr6_dbb_hap3	3958044	3958045	rs9275532	26272072	Jiang X	2015-08-13	Rheumatology (Oxford)	An Immunochip-based interaction study of contrasting interaction effects with smoking in ACPA-positive versus ACPA-negative rheumatoid arthritis.	ACPA-positive rheumatoid arthritis (smoking interaction)	340 European ancestry never-smoker cases, 493 European ancestry ever-smoker cases, 746 European ancestry never-smoker controls, 994 European ancestry ever-smoker controls	187 European ancestry never-smoker cases, 421 European ancestry ever-smoker cases, 461 European ancestry never-smoker controls, 447 European ancestry ever-smoker controls	6p21.32	NR	rs9275532-?	NR	5E-6	(adjusted for HLA shared epitope)	1.754386	[1.23-3.12]	Illumina [133648] (imputed)	N
615	chr6_dbb_hap3	3958661	3958662	rs3129721	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	IgA nephropathy	1,180 East Asian ancestry cases, 899 East Asian ancestry controls	NA			rs3129721-A	NR	6E-10		0.530478	[0.36-0.7] unit increase	Illumina [NR] (imputed)	N
615	chr6_dbb_hap3	3958661	3958662	rs3129721	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA		NR	rs3129721-?	NR	7E-7		0.0367	[0.022-0.051] unit decrease	Illumina [at least 560000] (imputed)	N
615	chr6_dbb_hap3	3959371	3959372	rs17615220	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	6p21.32	MTCO3P1	rs17615220-G	0.055013	3E-10		0.035653602	[0.025-0.047] unit decrease	Affymetrix [93095623] (imputed)	N
615	chr6_dbb_hap3	3959739	3959740	rs4947344	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	MTCO3P1	rs4947344-T	NR	6E-9		0.0183059	[0.012-0.024] unit decrease	Affymetrix [319769] (imputed)	N
615	chr6_dbb_hap3	3959739	3959740	rs4947344	31375628	Tengvall K	2019-08-02	Proc Natl Acad Sci U S A	Molecular mimicry between Anoctamin 2 and Epstein-Barr virus nuclear antigen 1 associates with multiple sclerosis risk.	Anti-anoctamin 2 antibody levels	11,936 European ancestry individuals	NA	6p21.32	NR	rs4947344-A	NR	1E-9		0.056	[0.032-0.080] unit increase	Illumina [615763]	N
615	chr6_dbb_hap3	3959739	3959740	rs4947344	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p21.32	NR	rs4947344-?	NR	1E-24		0.2606	[0.21-0.31] unit decrease	Illumina [at least 560000] (imputed)	N
615	chr6_dbb_hap3	3959801	3959802	rs9275563	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	MTCO3P1	rs9275563-T	NR	4E-11		0.0202974	[0.014-0.026] unit decrease	Affymetrix [323123] (imputed)	N
615	chr6_dbb_hap3	3959801	3959802	rs9275563	23472185	Mero IL	2013-03-05	PLoS One	Oligoclonal band status in Scandinavian multiple sclerosis patients is associated with specific genetic risk alleles.	Multiple sclerosis (OCB status)	1,367 European ancestry OCB positive cases, 161 European ancestry OCB negative cases, 428 European ancestry controls	NA	6p21.32	HLA-DQA2	rs9275563-?	NR	6E-11	(OCB positive vs. controls)	1.75	[1.47-2.04]	Illumina [495970]	N
615	chr6_dbb_hap3	3960079	3960080	rs6932517	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs6932517-C	0.48	2E-8		0.19	[0.14-0.27]	Illumina [NR] (imputed)	N
615	chr6_dbb_hap3	3960096	3960097	rs9275570	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma and/or BMI	28,862 European ancestry cases, 422,048 European ancestry controls, 6,912 European ancestry individuals	NA	6p21.32	NR	rs9275570-G	NR	2E-19				Affymetrix [~ 8270000] (imputed)	N
615	chr6_dbb_hap3	3960096	3960097	rs9275570	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	6p21.32	NR	rs9275570-?	NR	3E-18				Affymetrix [~ 8270000] (imputed)	N
615	chr6_dbb_hap3	3960321	3960322	rs2894281	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	6p21.32	MTCO3P1	rs2894281-A	0.50383	7E-14		0.018175296	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
615	chr6_dbb_hap3	3960493	3960494	rs4273729	23420232	Duggal P	2013-02-19	Ann Intern Med	Genome-wide association study of spontaneous resolution of hepatitis C virus infection: data from multiple cohorts.	Chronic hepatitis C infection	1,482 chronic HCV cases, 919 spontaneously cleared HCV cases	461 chronic HCV cases, 284 spontaneously cleared HCV cases	6p21.32	HLA	rs4273729-?	NR	5E-17		1.59		Illumina [792721] (imputed)	N
615	chr6_dbb_hap3	3960903	3960904	rs9275572	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs9275572-A	0.48	8E-9		0.17	[0.12-0.24]	Illumina [NR] (imputed)	N
615	chr6_dbb_hap3	3960903	3960904	rs9275572	24871463	Armstrong DL	2014-05-29	Genes Immun	GWAS identifies novel SLE susceptibility genes and explains the association of the HLA region.	Systemic lupus erythematosus	725 European ancestry cases, 2,438 European ancestry controls	NA	6p21.32	HLA-DQA2	rs9275572-A	0.4	5E-16		1.74	[1.64-1.85]	Illumina [NR]	N
615	chr6_dbb_hap3	3960903	3960904	rs9275572	24376798	Miki D	2013-12-20	PLoS One	HLA-DQB1*03 confers susceptibility to chronic hepatitis C in Japanese: a genome-wide association study.	Chronic hepatitis C infection	481 Japanese ancestry cases, 2,963 Japanese ancestry controls	5,737 Japanese ancestry cases, 26,931 Japanese ancestry controls	6p21.32	HLA-DQB1, HLA-DQA1	rs9275572-T	0.359	4E-16		1.27	[1.19-1.33]	Illumina [458207]	N
615	chr6_dbb_hap3	3960903	3960904	rs9275572	21499248	Kumar V	2011-04-17	Nat Genet	Genome-wide association study identifies a susceptibility locus for HCV-induced hepatocellular carcinoma.	Hepatocellular carcinoma	721 Japanese ancestry cases, 2,890 Japanese ancestry controls	673 Japanese ancestry cases, 2,596 Japanese ancestry controls	6p21.32	HLA-DQ, HLA-DR	rs9275572-A	0.36	6E-9		1.3	[1.19-1.42]	Illumina [432703]	N
615	chr6_dbb_hap3	3960903	3960904	rs9275572	20596022	Petukhova L	2010-07-01	Nature	Genome-wide association study in alopecia areata implicates both innate and adaptive immunity.	Alopecia areata	Up to 1,054 European ancestry cases, 3,278 European ancestry controls	NA	6p21.32	HLA-DQA2	rs9275572-G	0.59	1E-35		2.21	[1.98-2.47]	Illumina [463301]	N
615	chr6_dbb_hap3	3961229	3961230	rs9275576	31837886	Kennedy OJ	2019-12-02	Am J Kidney Dis	Coffee Consumption and Kidney Function: A Mendelian Randomization Study.	Coffee consumption (cups per day)	227,666 British ancestry individuals	NA	6p21.32	HLA-DQA2	rs9275576-T	0.146	6E-9		0.048	NR cups per day increase	NR [NR]	N
615	chr6_dbb_hap3	3961287	3961288	rs9275578	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs9275578-T	0.31	1E-9		4.62	[3.51-6.10]	Illumina [NR] (imputed)	N
615	chr6_dbb_hap3	3961362	3961363	rs9275579	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	MTCO3P1	rs9275579-A	NR	2E-11		0.0245816	[0.017-0.032] unit decrease	Affymetrix [323123] (imputed)	N
615	chr6_dbb_hap3	3961365	3961366	rs9275580	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs9275580-G	0.33	3E-8		3.96	[3.03-5.19]	Illumina [NR] (imputed)	N
615	chr6_dbb_hap3	3961973	3961974	rs9275582	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs9275582-T	0.31	1E-9		4.54	[3.45-5.98]	Illumina [NR] (imputed)	N
615	chr6_dbb_hap3	3961973	3961974	rs9275582	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (non-Lofgren's syndrome without extrapulmonary manifestations)	451 Swedish ancestry cases, 2,086 Swedish ancestry controls	NA	6p21.32	HLA-DQB1, HLA-DQA2, HLA-DQA1	rs9275582-G	0.83	2E-11		1.8705574	[1.57-2.24]	Illumina [118177]	N
615	chr6_dbb_hap3	3962025	3962026	rs3135461	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs3135461-A	0.841	2E-39		0.726	[0.68-0.77]	Illumina [11270530] (imputed)	N
615	chr6_dbb_hap3	3962025	3962026	rs3135461	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.32		rs3135461-A	0.773542	8E-36		1.0648913	[1.05-1.08]	Affymetrix, Illumina [9851866] (imputed)	N
615	chr6_dbb_hap3	3962286	3962287	rs9275587	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	XXbac-BPG254F23.7	rs9275587-C	NR	5E-9		0.0184889	[0.012-0.025] unit increase	Affymetrix [323858] (imputed)	N
615	chr6_dbb_hap3	3962286	3962287	rs9275587	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	XXbac-BPG254F23.7	rs9275587-C	NR	2E-8		0.0178049	[0.012-0.024] unit increase	Affymetrix [127266] (imputed)	N
615	chr6_dbb_hap3	3962483	3962484	rs7764819	23284291	Hancock DB	2012-12-20	PLoS Genet	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (smoking interaction)	50,047 European ancestry individuals	NA	6p21.32	HLA-DQA2, HLA-DQB1	rs7764819-T	0.89	4E-9	(FEV1/FVC, Pack-years)	1.0E-4	[-0.00014-0.00025] unit decrease	NR [~ 2500000] (imputed)	N
615	chr6_dbb_hap3	3962483	3962484	rs7764819	23284291	Hancock DB	2012-12-20	PLoS Genet	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (smoking interaction)	50,047 European ancestry individuals	NA	6p21.32	HLA-DQA2, HLA-DQB1	rs7764819-T	0.89	4E-9	(FEV1/FVC, Ever-smoking)	0.001	[-0.04016-0.04216] unit decrease	NR [~ 2500000] (imputed)	N
615	chr6_dbb_hap3	3962527	3962528	rs9275592	28041642	Carmona FD	2016-12-29	Am J Hum Genet	A Genome-wide Association Study Identifies Risk Alleles in Plasminogen and P4HA2 Associated with Giant Cell Arteritis.	Giant cell arteritis	2,134 European ancestry cases, 9,125 European ancestry controls	NA	6p21.32	HLA-DQA1, HLA-DQA2	rs9275592-?	0.11	1E-40		2.08	[1.87-2.32]	Illumina [1844133] (imputed)	N
615	chr6_dbb_hap3	3962837	3962838	rs7765379	25383971	Dunstan SJ	2014-11-10	Nat Genet	Variation at HLA-DRB1 is associated with resistance to enteric fever.	Enteric fever	432 Vietnamese ancestry cases, 2,011 Vietnamese ancestry controls	151 Vietnamese ancestry cases,  668 Vietnamese ancestry controls, 595 Nepalese ancestry cases, 386 Nepalese ancestry controls	6p21.32	HLA-DRB1, HLA-DQB1	rs7765379-A	0.945	2E-13		4.55	[2.94-6.67]	Illumina [709725]	N
615	chr6_dbb_hap3	3962837	3962838	rs7765379	23266558	Yamazaki K	2012-12-21	Gastroenterology	A genome-wide association study identifies 2 susceptibility Loci for Crohn's disease in a Japanese population.	Crohn's disease	372 Japanese ancestry cases,3,389 Japanese ancestry controls	Up to 1,151 Japanese ancestry cases, up to 15,800 Japanese ancestry controls	6p21.32	HLA-DQA2, HLA-DOB, HLA-DQB1, PSMB9, HLA-DRB1, HLA-DQA1	rs7765379-G	NR	9E-59		1.93	[1.78-2.09]	Illumina [4929034] (imputed)	N
615	chr6_dbb_hap3	3962837	3962838	rs7765379	21452313	Freudenberg J	2011-04-01	Arthritis Rheum	Genome-wide association study of rheumatoid arthritis in Koreans: population-specific loci as well as overlap with European susceptibility loci.	Rheumatoid arthritis	801 Korean ancestry cases, 757 Korean ancestry controls	718 Korean ancestry cases, 719 Korean ancestry controls	6p21.32	HLA-DRB1	rs7765379-?		5E-23		2.51	[NR]	Illumina [441398]	N
615	chr6_dbb_hap3	3963070	3963071	rs2858332	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	XXbac-BPG254F23.7	rs2858332-T	NR	7E-18		0.0263625	[0.02-0.032] unit decrease	Affymetrix [323123] (imputed)	N
615	chr6_dbb_hap3	3963070	3963071	rs2858332	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	6p21.32	HLA-DQA2	rs2858332-T	0.50665382076412	7E-7	(G_Clostridium_sensu_stricto_RNT)	0.129415	[0.078-0.181] unit decrease	Illumina [7711310] (imputed)	N
615	chr6_dbb_hap3	3963186	3963187	rs2858331	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs2858331-G	0.33	4E-8		3.82	[2.93-4.97]	Illumina [NR] (imputed)	N
615	chr6_dbb_hap3	3963186	3963187	rs2858331	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Non-Hodgkin's lymphoma	2,400 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs2858331-G	NR	3E-7		1.1625204	NR	Affymetrix [7846216] (imputed)	N
615	chr6_dbb_hap3	3963186	3963187	rs2858331	23146381	Levin AM	2012-11-10	J Allergy Clin Immunol	A meta-analysis of genome-wide association studies for serum total IgE in diverse study populations.	IgE levels	2,469 African American individuals, 259 Latino individuals, 1,564 European ancestry individuals	2,961 African American individuals, 1,477 Latino individuals, 649 European ancestry individuals, 680 Hutterite individuals	6p21.32	HLA-DQA2	rs2858331-G	NR	6E-6				Affymetrix, Illumina [NR] (imputed)	N
615	chr6_dbb_hap3	3963186	3963187	rs2858331	22075330	Granada M	2011-11-08	J Allergy Clin Immunol	A genome-wide association study of plasma total IgE concentrations in the Framingham Heart Study.	IgE levels	6,819 European ancestry individuals	7,809 European ancestry indivduals	6p21.32	HLA-DQA2	rs2858331-G	NR	1E-8		0.04	[NR] unit decrease	Affymetrix [2540223] (imputed)	N
615	chr6_dbb_hap3	3963264	3963265	rs9275595	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	6p21.32	HLA-DQA2	rs9275595-T	0.763	6E-6		0.016	[0.0089-0.0227] kg/m2 increase	Affymetrix, Illumina [2550021]	N
615	chr6_dbb_hap3	3963264	3963265	rs9275595	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	6p21.32	HLA-DQA2	rs9275595-T	0.76	9E-6	(EA)	0.016	[0.009-0.0232] kg/m2 increase	Affymetrix, Illumina [2550021]	N
615	chr6_dbb_hap3	3963392	3963393	rs7454108	29857070	Gao J	2018-05-29	J Invest Dermatol	Association study and fine-mapping major histocompatibility complex analysis of pemphigus vulgaris in a Han Chinese population.	Pemphigus vulgaris	240 Han Chinese ancestry cases, 1,031 Han Chinese ancestry controls	252 Han Chinese ancestry cases, 1,852 Han Chinese ancestry controls	6p21.32	NR	rs7454108-?	NR	3E-12	(conditioned on HLA-DRB1*14:04)	3.25	[NR]	Illumina [802980]	N
615	chr6_dbb_hap3	3963392	3963393	rs7454108	28029757	Merkel PA	2016-12-28	Arthritis Rheumatol	Identification of Functional and Expression Polymorphisms Associated With Risk for Antineutrophil Cytoplasmic Autoantibody-Associated Vasculitis.	Vasculitis associated with antineutrophil cytoplasmic antibody reactive to myeloperoxidase	324 European ancestry cases and 3258 European ancestry controls.	54 European ancestry cases and 1465 European ancestry controls.	6p21.32	HLA-DQA2	rs7454108-C	0.10	5E-25		2.73	2.25-3.24	Affymetrix [at least 333035] (imputed)	N
615	chr6_dbb_hap3	3963392	3963393	rs7454108	26272072	Jiang X	2015-08-13	Rheumatology (Oxford)	An Immunochip-based interaction study of contrasting interaction effects with smoking in ACPA-positive versus ACPA-negative rheumatoid arthritis.	ACPA-positive rheumatoid arthritis (smoking interaction)	340 European ancestry never-smoker cases, 493 European ancestry ever-smoker cases, 746 European ancestry never-smoker controls, 994 European ancestry ever-smoker controls	187 European ancestry never-smoker cases, 421 European ancestry ever-smoker cases, 461 European ancestry never-smoker controls, 447 European ancestry ever-smoker controls	6p21.32	NR	rs7454108-?	NR	2E-6	(adjusted for HLA shared epitope)	1.724138	[1.22-2.94]	Illumina [133648] (imputed)	N
615	chr6_dbb_hap3	3963439	3963440	rs3957146	26272072	Jiang X	2015-08-13	Rheumatology (Oxford)	An Immunochip-based interaction study of contrasting interaction effects with smoking in ACPA-positive versus ACPA-negative rheumatoid arthritis.	ACPA-positive rheumatoid arthritis (smoking interaction)	340 European ancestry never-smoker cases, 493 European ancestry ever-smoker cases, 746 European ancestry never-smoker controls, 994 European ancestry ever-smoker controls	187 European ancestry never-smoker cases, 421 European ancestry ever-smoker cases, 461 European ancestry never-smoker controls, 447 European ancestry ever-smoker controls	6p21.32	NR	rs3957146-?	NR	1E-6	(adjusted for HLA shared epitope)	1.724138	[1.22-2.86]	Illumina [133648] (imputed)	N
615	chr6_dbb_hap3	3963540	3963541	rs9275596	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	IgA nephropathy	1,180 East Asian ancestry cases, 899 East Asian ancestry controls	NA	6p21.32	NR	rs9275596-T	NR	6E-10				Illumina [NR] (imputed)	N
615	chr6_dbb_hap3	3963540	3963541	rs9275596	32912934	Li M	2020-09-10	J Am Soc Nephrol	Genome-Wide Meta-Analysis Identifies Three Novel Susceptibility Loci and Reveals Ethnic Heterogeneity of Genetic Susceptibility for IgA Nephropathy.	IgA nephropathy	2,628 Chinese ancestry cases, 11,563 Chinese ancestry controls	6,879 Han Chinese ancestry cases, 9,019 Han Chinese ancestry controls, 1,039 Italian ancestry cases, 1,289 Italian ancestry controls	6p21.32	DQB1.DRB1	rs9275596-T	0.8466025166479287	2E-13	(East Asian)	1.4409347	[1.3070519220741-1.58853123859263]	NR [3611808] (imputed)	N
615	chr6_dbb_hap3	3963540	3963541	rs9275596	25710614	Hong X	2015-02-24	Nat Commun	Genome-wide association study identifies peanut allergy-specific loci and evidence of epigenetic mediation in US children.	Peanut allergy	316 European ancestry child cases, 144 European ancestry non-allergic non-sensitized normal child controls, 589 European ancestry uncertain phenotype child controls, 1,148 European ancestry uncertain phenotype adult controls	62 European ancestry child cases, 69 European ancestry child controls, 24 child cases, 58 child controls	6p21.32	HLA-DRB1, HLA-DQA1, HLA-DQB1, HLA-DQA2	rs9275596-C	0.35	6E-11	(EA)	1.7	[1.40-2.10]	Illumina [6459842] (imputed)	N
615	chr6_dbb_hap3	3963540	3963541	rs9275596	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	6p21.32	HLA-DQB1, HLA-DQA1, HLA-DRB1	rs9275596-T	0.8	1E-19	(East Asian)	1.69	[NR]	Illumina [> 1000000] (imputed)	N
615	chr6_dbb_hap3	3963540	3963541	rs9275596	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	6p21.32	HLA-DQB1, HLA-DQA1, HLA-DRB1	rs9275596-T	0.65	3E-31		1.44	[NR]	Illumina [> 1000000] (imputed)	N
615	chr6_dbb_hap3	3963540	3963541	rs9275596	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	6p21.32	HLA-DQB1, HLA-DQA1, HLA-DRB1	rs9275596-T	0.65	2E-15	(EA)	1.35		Illumina [> 1000000] (imputed)	N
615	chr6_dbb_hap3	3963540	3963541	rs9275596	21399633	Gharavi AG	2011-03-13	Nat Genet	Genome-wide association study identifies susceptibility loci for IgA nephropathy.	Nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls	712 Han Chinese ancestry cases, 748 Han Chinese ancestry controls, 1,238 European ancestry cases, 1,172 European ancestry controls	6p21.32	HLA-DQB1, HLA-DRB1, HLA-DQA1	rs9275596-?	0.73 (EA)	2E-26		1.59	[NR]	Illumina [498322]	N
615	chr6_dbb_hap3	3963578	3963579	rs6935723	25217962	Heap GA	2014-09-14	Nat Genet	HLA-DQA1-HLA-DRB1 variants confer susceptibility to pancreatitis induced by thiopurine immunosuppressants.	Response to thiopurine immunosuppressants in inflammatory bowel disease (pancreatitis) (azathioprine and mercaptopurine)	172 European ancestry cases, 2,035 European ancestry controls	78 European ancestry cases, 472 controls	6p21.32	HLA region	rs6935723-C	0.27	1E-21		2.46	[2.04-2.98]	Affymetrix, Illumina [2819700] (imputed)	N
615	chr6_dbb_hap3	3963585	3963586	rs3104402	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	XXbac-BPG254F23.7	rs3104402-T	NR	3E-10		0.035252	[0.024-0.046] unit increase	Affymetrix [323123] (imputed)	N
615	chr6_dbb_hap3	3963585	3963586	rs3104402	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	6p21.32	NR	rs3104402-?	NR	1E-8		0.1164	[0.076-0.157] unit decrease	Illumina [at least 560000] (imputed)	N
615	chr6_dbb_hap3	3963585	3963586	rs3104402	22658931	Pajewski NM	2012-05-30	Vaccine	A genome-wide association study of host genetic determinants of the antibody response to Anthrax Vaccine Adsorbed.	Immune response to anthrax vaccine	726 European ancestry individuals	NA	6p21.32	HLA-DRB1, HLA-DQA1	rs3104402-A	NR	6E-6		0.165	[0.094-0.236] unit decrease	Affymetrix [736996]	N
615	chr6_dbb_hap3	3963902	3963903	rs3998158	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs3998158-C	0.3	4E-9		4.39	[3.33-5.79]	Illumina [NR] (imputed)	N
615	chr6_dbb_hap3	3963929	3963930	rs3998159	26272072	Jiang X	2015-08-13	Rheumatology (Oxford)	An Immunochip-based interaction study of contrasting interaction effects with smoking in ACPA-positive versus ACPA-negative rheumatoid arthritis.	ACPA-positive rheumatoid arthritis (smoking interaction)	340 European ancestry never-smoker cases, 493 European ancestry ever-smoker cases, 746 European ancestry never-smoker controls, 994 European ancestry ever-smoker controls	187 European ancestry never-smoker cases, 421 European ancestry ever-smoker cases, 461 European ancestry never-smoker controls, 447 European ancestry ever-smoker controls	6p21.32	NR	rs3998159-?	NR	2E-6	(adjusted for HLA shared epitope)	1.724138	[1.22-2.94]	Illumina [133648] (imputed)	N
615	chr6_dbb_hap3	3964047	3964048	rs3957147	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	XXbac-BPG254F23.7	rs3957147-T	NR	5E-9		0.0232882	[0.015-0.031] unit increase	Affymetrix [323123] (imputed)	N
615	chr6_dbb_hap3	3964047	3964048	rs3957147	32534018	Liu X	2020-06-10	Brain Behav Immun	Genetic factors underlying the bidirectional relationship between autoimmune and mental disorders - findings from a Danish population-based study.	Autoimmune traits	1,383 Danish ancestry cases, 62,656 Danish ancestry controls	NA	6p21.32	NR	rs3957147-T	0.21	9E-9		1.34	[1.21-1.48]	NR [7721839] (imputed)	N
615	chr6_dbb_hap3	3964086	3964087	rs3104404	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	150,545 East Asian ancestry individuals	NA	6p21.32		rs3104404-A	0.356773	3E-10		0.0227	[0.016-0.03] unit decrease	Illumina [13478866] (imputed)	N
615	chr6_dbb_hap3	3964111	3964112	rs35122968	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p21.32	HLA-DQA2	rs35122968-C	0.043	4E-11		0.2	[0.14-0.26] unit increase	Affymetrix, Illumina [7374092] (imputed)	N
615	chr6_dbb_hap3	3964119	3964120	rs3129731	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	6p21.32		rs3129731-G	0.795841844	3E-12		0.07240271	[0.052-0.093] unit decrease	Illumina [13134967] (imputed)	N
615	chr6_dbb_hap3	3964140	3964141	rs2894381	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	6p21.32		rs2894381-A	0.422035	4E-8		0.0201838	[0.013-0.027] unit increase	Illumina [13476266] (imputed)	N
615	chr6_dbb_hap3	3964140	3964141	rs2894381	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	121,047 East Asian ancestry individuals	NA	6p21.32	NR	rs2894381-G	0.566792	3E-10		0.026702	[0.018-0.035] SD units decrease	Affymetrix, Illumina [16286195] (imputed)	N
615	chr6_dbb_hap3	3964140	3964141	rs2894381	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p21.32		rs2894381-?	NR	6E-9		0.0142926	[0.0092-0.0194] unit decrease	Affymetrix [20259828] (imputed)	N
615	chr6_dbb_hap3	3964306	3964307	rs3997848	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.32		rs3997848-T	0.676	4E-17				Affymetrix [10369434] (imputed)	N
615	chr6_dbb_hap3	3964306	3964307	rs3997848	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	XXbac-BPG254F23.7	rs3997848-G	NR	2E-8		0.0168279	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
615	chr6_dbb_hap3	3964306	3964307	rs3997848	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	XXbac-BPG254F23.7	rs3997848-G	NR	1E-8		0.0171568	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
615	chr6_dbb_hap3	3964306	3964307	rs3997848	33545615	Hsu LA	2021-01-19	Atherosclerosis	Circulating chemerin levels are determined through circulating platelet counts in nondiabetic Taiwanese people: A bidirectional Mendelian randomization study.	Chemerin levels	3,887 Han Chinese ancestry individuals	NA	6p21.32	HLA	rs3997848-?	NR	5E-8		0.017	[0.012-0.022] unit increase (adjusted)	Affymetrix [610203]	N
615	chr6_dbb_hap3	3964306	3964307	rs3997848	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p21.32	HLA-DQA2	rs3997848-G	0.117	2E-14		0.135	[0.1-0.17] unit increase	Affymetrix, Illumina [7374092] (imputed)	N
615	chr6_dbb_hap3	3964314	3964315	rs3997849	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p21.32	NR	rs3997849-T	0.262	3E-6	(IFNAR2_of_CD8p_T)			Illumina [5084123] (imputed)	N
615	chr6_dbb_hap3	3964341	3964342	rs9275599	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs9275599-T	0.032	2E-16	(conditional)	1.585	[1.48-1.69]	Illumina [11270530] (imputed)	N
615	chr6_dbb_hap3	3964499	3964500	rs113721192	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.32	Intergenic	rs113721192-?		1E-6		1.06	[1.03-1.08]	Illumina [7645193] (imputed)	N
615	chr6_dbb_hap3	3964499	3964500	rs113721192	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.32	Intergenic	rs113721192-?		3E-7		1.76	[1.42-2.18]	Illumina [7645193] (imputed)	N
615	chr6_dbb_hap3	3964573	3964574	rs9275601	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.32		rs9275601-C	0.559	2E-19				Affymetrix [10369434] (imputed)	N
615	chr6_dbb_hap3	3964573	3964574	rs9275601	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.32		rs9275601-C	0.559	1E-20				Affymetrix [10369434] (imputed)	N
615	chr6_dbb_hap3	3964721	3964722	rs9275602	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	XXbac-BPG254F23.7	rs9275602-A	NR	1E-8		0.0219542	[0.014-0.029] unit increase	Affymetrix [323123] (imputed)	N
615	chr6_dbb_hap3	3964721	3964722	rs9275602	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs9275602-?	NR	8E-10				Affymetrix [~ 8270000] (imputed)	N
615	chr6_dbb_hap3	3964721	3964722	rs9275602	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	6p21.32	NR	rs9275602-?	NR	5E-29	(conditional)			Affymetrix [15688218] (imputed)	N
615	chr6_dbb_hap3	3965477	3965478	rs200025476	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.32	NR	rs200025476-T	0.011	3E-9		0.507765	[0.34-0.67] unit increase	Affymetrix [up to 8900000] (imputed)	N
615	chr6_dbb_hap3	3965477	3965478	rs200025476	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.32	NR	rs200025476-T	0.011	2E-6	(women)	0.688868	[0.41-0.97] unit increase	Affymetrix [up to 8900000] (imputed)	N
615	chr6_dbb_hap3	3965593	3965594	rs9391746	33961016	Moksnes MR	2021-05-07	Hum Mol Genet	Genome-wide association study of cardiac troponin I in the general population.	High-sensitivity cardiac troponin I concentration	48,115 European ancestry individuals	NA	6p21.32		rs9391746-T	0.0718	1E-8		0.08	[0.06-0.1] unit increase	Illumina [26711992] (imputed)	N
615	chr6_dbb_hap3	3966257	3966258	rs5024431	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6p21.32		rs5024431-?	NR	6E-17		0.897905	[0.87-0.92]	NR [685523]	N
615	chr6_dbb_hap3	3966427	3966428	rs6457637	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on plasmacytoid Dendritic Cell	2,872 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs6457637-G	0.07647	9E-15		0.4484	[0.34-0.56] unit decrease	Illumina [17926607] (imputed)	N
615	chr6_dbb_hap3	3966848	3966849	rs9275642	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Skin cancer	25,928 European ancestry cases, 466,275 European ancestry controls, 154 East Asian ancestry cases, 178,572 East Asian ancestry controls	NA	6p21.32		rs9275642-T	NR	4E-21		0.1097	[0.087-0.132] unit decrease	Affymetrix, Illumina [25845421] (imputed)	N
615	chr6_dbb_hap3	3966848	3966849	rs9275642	27539887	Chahal HS	2016-08-19	Nat Commun	Genome-wide association study identifies 14 novel risk alleles associated with basal cell carcinoma.	Basal cell carcinoma	12.945 European ancestry cases, 274,252 European ancestry controls	4,242 European ancestry cases, 12,802 European ancestry controls	6p21.32	HLA-DQA2	rs9275642-C	0.79	2E-12		1.1235955	[NR]	Illumina [at least 560000] (imputed)	N
615	chr6_dbb_hap3	3967111	3967112	rs41288885	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.32	XXbac-BPG254F23.7	rs41288885-G	0.058676	5E-9		0.028841805	[0.019-0.039] unit increase	Affymetrix [93095623] (imputed)	N
615	chr6_dbb_hap3	3967111	3967112	rs41288885	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.32	NR	rs41288885-?	NR	9E-10				Affymetrix [~ 8270000] (imputed)	N
615	chr6_dbb_hap3	3967293	3967294	rs3998154	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.32		rs3998154-G	0.585	9E-27				Affymetrix [10369434] (imputed)	N
615	chr6_dbb_hap3	3967293	3967294	rs3998154	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p21.32		rs3998154-G	0.585	1E-22				Affymetrix [10369434] (imputed)	N
615	chr6_dbb_hap3	3967463	3967464	rs3916765	34716350	Lin WY	2021-10-29	Nat Commun	Genome-wide association study identifies susceptibility loci for acute myeloid leukemia.	Acute myeloid leukemia (normal cytogenetics)	3,041 European ancestry cases, 6,760 European ancestry controls	977 European ancestry cases, 3,728 European ancestry controls	6p21.32		rs3916765-G	NR	2E-10		1.72	[1.46-2.03]	Affymetrix, Illumina [6496414] (imputed)	N
615	chr6_dbb_hap3	3967463	3967464	rs3916765	22693455	Perry JR	2012-05-31	PLoS Genet	Stratifying type 2 diabetes cases by BMI identifies genetic risk variants in LAMA1 and enrichment for risk variants in lean compared to obese cases.	Type 2 diabetes	2,112 lean type 2 diabetes cases, 4,123 obese type 2 diabetes cases, 54,412 controls	2,881 lean type 2 diabetes cases, 8,702 obese type 2 diabetes cases, 18,957 controls	6p21.32	HLA-DQA2	rs3916765-A	0.12	1E-6	(Lean)	1.21	[1.12-1.31]	NR [NR]	N
615	chr6_dbb_hap3	3968546	3968547	rs9275667	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	XXbac-BPG254F23.7	rs9275667-T	NR	1E-15		0.0312755	[0.024-0.039] unit decrease	Affymetrix [323858] (imputed)	N
615	chr6_dbb_hap3	3968546	3968547	rs9275667	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	XXbac-BPG254F23.7	rs9275667-T	NR	6E-15		0.0304364	[0.023-0.038] unit decrease	Affymetrix [127266] (imputed)	N
615	chr6_dbb_hap3	3970179	3970180	rs9275698	21804548	Hirota T	2011-07-31	Nat Genet	Genome-wide association study identifies three new susceptibility loci for adult asthma in the Japanese population.	Asthma	1,532 Japanese ancestry cases, 3,304 Japanese ancestry controls	5,639 Japanese ancestry cases, 24,608 Japanese ancestry controls	6p21.32	HLA-DQA2	rs9275698-T	0.79	5E-12		1.18	[1.12-1.24]	Illumina [458847]	N
615	chr6_dbb_hap3	3970427	3970428	rs9275710	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	XXbac-BPG254F23.7	rs9275710-T	NR	1E-9		0.0190333	[0.013-0.025] unit decrease	Affymetrix [323858] (imputed)	N
615	chr6_dbb_hap3	3970427	3970428	rs9275710	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	XXbac-BPG254F23.7	rs9275710-T	NR	9E-9		0.018054	[0.012-0.024] unit decrease	Affymetrix [127266] (imputed)	N
615	chr6_dbb_hap3	3972454	3972455	rs117522574	32771030	Tangtanatakul P	2020-08-08	Arthritis Res Ther	Meta-analysis of genome-wide association study identifies FBN2 as a novel locus associated with systemic lupus erythematosus in Thai population.	Systemic lupus erythematosus	487 Thai cases, 1,606 Thai controls	405 Thai cases, 1,590 Thai controls	6p21.32	XXbac-BPG254F23.7, HLA-DQB3	rs117522574-G	0.19	3E-8		1.5082	[NR]	Illumina [421909] (imputed)	N
615	chr6_dbb_hap3	3973594	3973595	rs9275844	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	XXbac-BPG254F23.7	rs9275844-T	NR	2E-8		0.0217782	[0.014-0.029] unit increase	Affymetrix [323123] (imputed)	N
615	chr6_dbb_hap3	3975816	3975817	rs2858892	30657218	Park SY	2019-01-18	Clin Exp Allergy	Longitudinal analysis to better characterize Asthma-COPD Overlap Syndrome (ACOS): Findings from an adult asthma cohort in Korea (COREA).	Adult asthma	731 Korean ancestry cases, 5,915 Korean ancestry controls	NA	6p21.32	NR	rs2858892-?	NR	4E-7		1.34		NR [267429]	N
615	chr6_dbb_hap3	3976573	3976574	rs114803904	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs114803904-C	0.474	1E-24	(cAMP-specific 3',5'-cyclic phosphodiesterase 4D, PDE4D.5255.22.3)	0.29	[0.23-0.35] unit increase	Affymetrix [10572788] (imputed)	N
615	chr6_dbb_hap3	3977645	3977646	rs73732611	33558538	Gebresilase T	2021-02-08	Sci Rep	Replication of HLA class II locus association with susceptibility to podoconiosis in three Ethiopian ethnic groups.	Podoconiosis	1,137 Ethiopian ancestry cases, 1,152 Ethiopian ancestry controls	NA	6p21.32	HLA-DQB3	rs73732611-C	0.07	5E-9				Illumina [2201695]	N
615	chr6_dbb_hap3	3980354	3980355	rs2859113	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	NR	rs2859113-C	0.378328302013423	6E-8	(IGP59)	0.1817	[0.12-0.25] unit decrease	Illumina [~ 2500000] (imputed)	N
615	chr6_dbb_hap3	3982660	3982661	rs2858884	20711174	Hor H	2010-08-15	Nat Genet	Genome-wide association study identifies new HLA class II haplotypes strongly protective against narcolepsy.	Narcolepsy	562 European ancestry cases, 702 European ancestry controls	370 cases, 495 controls	6p21.32	HLA-DQA2	rs2858884-A	0.81	3E-8		1.79	[1.45-2.17]	Affymetrix [392949]	N
615	chr6_dbb_hap3	3983789	3983790	rs9276244	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	IgA levels	16,883 Icelandic ancestry individuals	2,151 Swedish ancestry individuals	6p21.32	HLA-DQA2	rs9276244-G	0.328	3E-14		0.09	NR SD units increase	Illumina [21568490] (imputed)	N
615	chr6_dbb_hap3	3984543	3984544	rs9276263	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p21.32	NR	rs9276263-?	NR	7E-16		0.1146	[0.087-0.142] unit increase	Illumina [at least 560000] (imputed)	N
615	chr6_dbb_hap3	3989856	3989857	rs9276370	32004448	Savage SA	2020-01-30	Am J Hum Genet	Genome-wide Association Study Identifies HLA-DPB1 as a Significant Risk Factor for Severe Aplastic Anemia.	Severe aplastic anemia	359 European ancestry cases, 1,396 European ancestry controls	175 European ancestry cases, 1,059 European ancestry controls	6p21.32	HLA-DQA2, HLA-DQB2	rs9276370-?	NR	5E-7		1.41	[1.23-1.62]	Illumina [688067]	N
615	chr6_dbb_hap3	3989856	3989857	rs9276370	24940741	Chang SW	2014-06-18	PLoS One	A genome-wide association study on chronic HBV infection and its clinical progression in male Han-Taiwanese.	Chronic hepatitis B infection	321 Chinese ancestry cases, 304 Chinese ancestry controls	1,302 Chinese ancestry cases, 761 Chinese ancestry controls	6p21.32	HLA-DQA2	rs9276370-T	0.076	2E-12		1.95	[1.62-2.34]	Illumina [456262]	N
615	chr6_dbb_hap3	3990927	3990927	rs11426605	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs11426605-T	0.966	3E-15	(conditional)	0.648	[0.54-0.76]	Illumina [11270530] (imputed)	N
615	chr6_dbb_hap3	3992780	3992781	rs9461806	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.32		rs9461806-C	0.595	2E-17				Affymetrix [10369434] (imputed)	N
615	chr6_dbb_hap3	3992780	3992781	rs9461806	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.32		rs9461806-C	0.595	1E-25				Affymetrix [10369434] (imputed)	N
615	chr6_dbb_hap3	3992966	3992967	rs115018313	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	6p21.32		rs115018313-C	NR	7E-33		0.284	[0.24-0.33] unit increase	Affymetrix, Illumina [25845091] (imputed)	N
615	chr6_dbb_hap3	3993412	3993413	rs9276423	26379185	Garcia-Etxebarria K	2015-09-17	PLoS One	No Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity.	Mild influenza (H1N1) infection	107 European ancestry mild cases, 549 European ancestry population controls	NA	6p21.32	HLA-DQA2	rs9276423-?	0.0	3E-8				Affymetrix [547296]	N
615	chr6_dbb_hap3	3994417	3994418	rs9276427	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first birth	542,901 European ancestry individuals	NA	6p21.32	HLA-DQA2	rs9276427-T	0.5217	3E-8		0.0532	[0.034-0.072] unit increase	NR [9744772] (imputed)	N
615	chr6_dbb_hap3	3994417	3994418	rs9276427	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQA2	rs9276427-C	NR	6E-9		0.0164173	[0.011-0.022] unit increase	Affymetrix [319769] (imputed)	N
615	chr6_dbb_hap3	3994417	3994418	rs9276427	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DQA2	rs9276427-C	NR	1E-8		0.0160937	[0.011-0.022] unit increase	Affymetrix [319769] (imputed)	N
615	chr6_dbb_hap3	3994417	3994418	rs9276427	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DQA2	rs9276427-C	NR	3E-8		0.0158296	[0.01-0.021] unit increase	Affymetrix [321169] (imputed)	N
615	chr6_dbb_hap3	3994417	3994418	rs9276427	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.32		rs9276427-C	0.49390500000000004	2E-10		1.0275491	[1.02-1.03]	Affymetrix, Illumina [9851866] (imputed)	N
615	chr6_dbb_hap3	3994569	3994570	rs41288889	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs41288889-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
615	chr6_dbb_hap3	3995231	3995232	rs9276434	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	6p21.32	HLA-DQA2	rs9276434-T	NR	4E-17		0.0479129	[0.037-0.059] unit decrease	Illumina [13520550] (imputed)	N
615	chr6_dbb_hap3	3996432	3996433	rs9276435	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cervical cancer	6,563 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs9276435-C	NR	2E-10		1.1631	NR	Affymetrix [7846216] (imputed)	N
615	chr6_dbb_hap3	4003982	4003983	rs2077046	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQB2	rs2077046-C	NR	2E-8		0.0159433	[0.01-0.021] unit increase	Affymetrix [319769] (imputed)	N
615	chr6_dbb_hap3	4007758	4007759	rs2301271	21408207	Chung SA	2011-03-03	PLoS Genet	Differential genetic associations for systemic lupus erythematosus based on anti-dsDNA autoantibody production.	Systemic lupus erythematosus	811 anti-dsDNA positive European ancestry cases, 906 anti-dsDNA negative European ancestry cases, 4,813 European ancestry controls	NA	6p21.32	HLA-DQA2	rs2301271-T	0.40	2E-12	(anti-dsDNA -)	1.47	[1.32-1.63]	Illumina [421318] (imputed)	N
615	chr6_dbb_hap3	4008841	4008842	rs9276578	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p21.32	HLA-DQB2	rs9276578-G	NR	2E-9		0.0231702	[0.016-0.031] unit decrease	Affymetrix [323858] (imputed)	N
615	chr6_dbb_hap3	4009370	4009371	rs1049110	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	HLA-DQA2, HLA-DQB2	rs1049110-C	0.346381764494382	2E-8	(IGP42)	0.1909	[0.12-0.26] unit increase	Illumina [~ 2500000] (imputed)	N
615	chr6_dbb_hap3	4009370	4009371	rs1049110	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	HLA-DQA2, HLA-DQB2	rs1049110-C	0.34601888034188	4E-8	(IGP2)	0.1853	[0.12-0.25] unit increase	Illumina [~ 2500000] (imputed)	N
615	chr6_dbb_hap3	4009776	4009777	rs9276580	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.32		rs9276580-T	0.46	8E-18				Affymetrix [10369434] (imputed)	N
615	chr6_dbb_hap3	4009892	4009893	rs7753017	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs7753017-A	0.237	5E-43		0.745	[0.7-0.79]	Illumina [11270530] (imputed)	N
615	chr6_dbb_hap3	4011209	4011210	rs2395258	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	6p21.32	HLA-DQB2	rs2395258-T	NR	6E-9		0.0205128	[0.014-0.027] unit increase	Illumina [13519193] (imputed)	N
615	chr6_dbb_hap3	4011625	4011626	rs2006163	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.32		rs2006163-A	0.462	4E-35				Affymetrix [10369434] (imputed)	N
615	chr6_dbb_hap3	4012300	4012301	rs2008560	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQB2	rs2008560-G	NR	3E-12		0.0196979	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
615	chr6_dbb_hap3	4012300	4012301	rs2008560	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DQB2	rs2008560-G	NR	2E-11		0.0189439	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
615	chr6_dbb_hap3	4012300	4012301	rs2008560	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DQB2	rs2008560-G	NR	1E-10		0.0183237	[0.013-0.024] unit increase	Affymetrix [321169] (imputed)	N
615	chr6_dbb_hap3	4012300	4012301	rs2008560	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling worry	372,869 European ancestry individuals	NA	6p21.32	C4B	rs2008560-C	0.496591	3E-8		5.56	unit decrease	NR [10847151] (imputed)	N
615	chr6_dbb_hap3	4012578	4012579	rs7453920	27244555	Li Y	2016-05-31	Nat Commun	Genome-wide association study identifies 8p21.3 associated with persistent hepatitis B virus infection among Chinese.	Persistent hepatitis B virus infection	1,251 Chinese ancestry persistently infected cases, 1,057 Chinese ancestry spontaneously recovered controls	3,905 Chinese ancestry persistently infected cases, 3,356 Chinese ancestry spontaneously recovered controls	6p21.32	HLA-DQB2	rs7453920-A		6E-6		2.0	[1.47-2.78]	Affymetrix, Illumina [up to 4494311] (imputed)	N
615	chr6_dbb_hap3	4012578	4012579	rs7453920	25802187	Jiang DK	2015-04-28	Hepatology	Genetic variants in five novel loci including CFB and CD40 predispose to chronic hepatitis B.	Chronic hepatitis B infection	2,514 Chinese ancestry cases, 1,130 Chinese ancestry controls	6,600 Chinese ancestry cases, 8,127 Chinese ancestry controls	6p21.32	HLA-DQB2	rs7453920-A	0.88	1E-60		2.0	[1.82-2.17]	Illumina [3680900] (imputed)	N
615	chr6_dbb_hap3	4012578	4012579	rs7453920	24940741	Chang SW	2014-06-18	PLoS One	A genome-wide association study on chronic HBV infection and its clinical progression in male Han-Taiwanese.	Chronic hepatitis B infection	321 Chinese ancestry cases, 304 Chinese ancestry controls	1,302 Chinese ancestry cases, 761 Chinese ancestry controls	6p21.32	HLA-DQB2	rs7453920-G	0.051	7E-15		2.31	[1.87-2.85]	Illumina [456262]	N
615	chr6_dbb_hap3	4012578	4012579	rs7453920	24162738	Hu Z	2013-10-27	Nat Genet	New loci associated with chronic hepatitis B virus infection in Han Chinese.	Hepatitis B	951 Han Chinese ancestry HBV carrier cases, 937 Han Chinese ancestry HBV cleared controls	4,230 Chinese ancestry HBV carrier cases, 3,051 Chinese ancestry HBV cleared controls, 2,622 Chinese ancestry controls	6p21.32	HLA-DQB2	rs7453920-G	0.87	5E-37		1.8868	[1.69-2.08]	Illumina [490610]	N
615	chr6_dbb_hap3	4012578	4012579	rs7453920	23760081	Kim YJ	2013-06-10	Hum Mol Genet	A genome-wide association study identified new variants associated with the risk of chronic hepatitis B.	Chronic hepatitis B infection	400 Korean ancestry cases, 1,000 Korean ancestry controls	971 Korean ancestry cases, 1,938 Korean ancestry controls	6p21.32	HLA-DQ	rs7453920-?	NR	7E-26		2.0	[1.72-2.27]	Illumina [719265]	N
615	chr6_dbb_hap3	4012578	4012579	rs7453920	23349640	Vijai J	2013-01-17	PLoS Genet	Susceptibility loci associated with specific and shared subtypes of lymphoid malignancies.	Lymphoma	275 Follicular non-Hodgkin's Lymphoma cases, 269 diffuse large B-cell non-Hodgkin's Lymphoma cases, 198 other non-Hodgkin's Lymphoma cases, 202 Hodgkin's Lymphoma cases, 4,044 controls	202 European ancestry Follicular non-Hodgkin's Lymphoma cases, 367 European ancestry diffuse large B-cell non-Hodgkin's Lymphoma cases, 577 European ancestry other non-Hodgkin's Lymphoma cases, 99 European ancestry Hodgkin's Lymphoma cases, 2,596 European ancestry controls	6p21.32	HLA-DQB2	rs7453920-?	NR	5E-6	(LYM)	1.19	[1.11-1.3]	Affymetrix [530583]	N
615	chr6_dbb_hap3	4012578	4012579	rs7453920	21750111	Mbarek H	2011-07-12	Hum Mol Genet	A genome-wide association study of chronic hepatitis B identified novel risk locus in a Japanese population.	Hepatitis B	458 Japanese ancestry cases, 2,056 Japanese ancestry controls	2,209 Japanese ancestry cases, 4,440 Japanese ancestry controls	6p21.32	HAL-DQB2	rs7453920-G	0.83	6E-28		1.81	[1.62-2.01]	Illumina [423627]	N
615	chr6_dbb_hap3	4012652	4012653	rs2051549	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DQB2	rs2051549-G	NR	4E-9		0.0181006	[0.012-0.024] unit increase	Affymetrix [323123] (imputed)	N
615	chr6_dbb_hap3	4012652	4012653	rs2051549	23053960	Lee YH	2012-10-07	Mol Biol Rep	Genome-wide pathway analysis of genome-wide association studies on systemic lupus erythematosus and rheumatoid arthritis.	Systemic lupus erythematosus	1,527 European ancestry cases, 3,421 European ancestry controls,	NA	6p21.32	HLA-DQA2	rs2051549-?	NR	3E-22				Illumina [737984]	N
615	chr6_dbb_hap3	4013506	4013507	rs2071550	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	6p21.32	SLC44A4, EHMT2, HLA-DQB2, STK19, CYP21A2, TNXB	rs2071550-?	NR	7E-6				Affymetrix, Illumina [18800000] (imputed)	N
615	chr6_dbb_hap3	4013506	4013507	rs2071550	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	6p21.32	SLC44A4, EHMT2, HLA-DQB2, STK19, CYP21A2, TNXB	rs2071550-?	NR	1E-9	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
615	chr6_dbb_hap3	4013506	4013507	rs2071550	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	6p21.32	SLC44A4, EHMT2, HLA-DQB2, STK19, CYP21A2, TNXB	rs2071550-?	NR	5E-8	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
615	chr6_dbb_hap3	4016192	4016193	rs33998906	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQB2	rs33998906-T	NR	5E-8		0.0304833	[0.02-0.041] unit increase	Affymetrix [319769] (imputed)	N
615	chr6_dbb_hap3	4016192	4016193	rs33998906	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DQB2	rs33998906-T	NR	2E-8		0.0314602	[0.021-0.042] unit increase	Affymetrix [319769] (imputed)	N
615	chr6_dbb_hap3	4016868	4016869	rs9276601	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQB2	rs9276601-G	NR	4E-8		0.0202269	[0.013-0.027] unit decrease	Affymetrix [319769] (imputed)	N
615	chr6_dbb_hap3	4018560	4018561	rs9296042	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Scarlet fever	6,812 European ancestry cases, 113,837 European ancestry controls	NA	6p21.32	NR	rs9296042-?	NR	3E-6		0.0873	[0.051-0.124] unit decrease	Illumina [at least 560000] (imputed)	N
615	chr6_dbb_hap3	4019250	4019251	rs9276606	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DQB2	rs9276606-T	NR	1E-9		0.021091	[0.014-0.028] unit decrease	Affymetrix [323858] (imputed)	N
615	chr6_dbb_hap3	4019250	4019251	rs9276606	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	HLA-DQB2	rs9276606-T	NR	2E-9		0.0208414	[0.014-0.028] unit decrease	Affymetrix [127266] (imputed)	N
615	chr6_dbb_hap3	4019250	4019251	rs9276606	23028341	Yang X	2012-09-13	PLoS Genet	Genome-wide association study for serum complement C3 and C4 levels in healthy Chinese subjects.	Complement C3 and C4 levels	1,999 Han Chinese ancestry male individuals	1,496 Han Chinese ancestry male individuals	6p21.32	HLA-DQB	rs9276606-T	0.15	3E-22	(Serum level of C4)	0.09	[0.070-0.110] g/L decrease	Illumina [1940245] (imputed)	N
615	chr6_dbb_hap3	4022969	4022970	rs2857212	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.32		rs2857212-A	0.635	2E-33				Affymetrix [10369434] (imputed)	N
615	chr6_dbb_hap3	4022969	4022970	rs2857212	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.32		rs2857212-A	0.635	2E-31				Affymetrix [10369434] (imputed)	N
615	chr6_dbb_hap3	4022969	4022970	rs2857212	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.32		rs2857212-A	0.635	2E-57				Affymetrix [10369434] (imputed)	N
615	chr6_dbb_hap3	4023562	4023563	rs2621419	33235445	Lee YJ	2020-11-17	Int J Chron Obstruct Pulmon Dis	A Genome-Wide Association Study in Early COPD: Identification of One Major Susceptibility Loci.	Early chronic obstructive pulmonary disease in never smokers	38 Korean ancestry cases, 1,778 Korean ancestry controls	NA	6p21.32	HLA-DQB2	rs2621419-?	NR	9E-6		0.68	NR	Affymetrix [345072]	N
615	chr6_dbb_hap3	4024424	4024425	rs2621416	23349640	Vijai J	2013-01-17	PLoS Genet	Susceptibility loci associated with specific and shared subtypes of lymphoid malignancies.	Lymphoma	275 Follicular non-Hodgkin's Lymphoma cases, 269 diffuse large B-cell non-Hodgkin's Lymphoma cases, 198 other non-Hodgkin's Lymphoma cases, 202 Hodgkin's Lymphoma cases, 4,044 controls	202 European ancestry Follicular non-Hodgkin's Lymphoma cases, 367 European ancestry diffuse large B-cell non-Hodgkin's Lymphoma cases, 577 European ancestry other non-Hodgkin's Lymphoma cases, 99 European ancestry Hodgkin's Lymphoma cases, 2,596 European ancestry controls	6p21.32	HLA-DQB2, TAP2	rs2621416-G	NR	2E-9	(FL)	1.57	[NR]	Affymetrix [530583]	N
615	chr6_dbb_hap3	4024651	4024652	rs9276610	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DQB2	rs9276610-A	NR	1E-9		0.0272626	[0.018-0.036] unit increase	Affymetrix [323123] (imputed)	N
615	chr6_dbb_hap3	4025381	4025382	rs12663317	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	6p21.32	NR	rs12663317-?	NR	6E-12				Affymetrix [~ 8270000] (imputed)	N
615	chr6_dbb_hap3	4026916	4026917	rs2857204	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	6p21.32	intergenic	rs2857204-T	0.327	9E-19		0.03378215	[0.026-0.041] unit decrease	Affymetrix [~ 2500000] (imputed)	N
615	chr6_dbb_hap3	4027009	4027010	rs28724893	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQB2	rs28724893-T	NR	2E-8		0.0157586	[0.01-0.021] unit decrease	Affymetrix [319769] (imputed)	N
615	chr6_dbb_hap3	4027009	4027010	rs28724893	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DQB2	rs28724893-T	NR	4E-11		0.0202278	[0.014-0.026] unit increase	Affymetrix [323123] (imputed)	N
615	chr6_dbb_hap3	4027402	4027403	rs9276643	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6p21.32	NR	rs9276643-C	0.6647	8E-12		1.0858942	[1.06-1.11]	Affymetrix [15688218] (imputed)	N
615	chr6_dbb_hap3	4027402	4027403	rs9276643	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	6p21.32	NR	rs9276643-?	NR	7E-105	(conditional)			Affymetrix [15688218] (imputed)	N
615	chr6_dbb_hap3	4028095	4028096	rs12661352	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs12661352-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
615	chr6_dbb_hap3	4028894	4028895	rs9501203	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.32		rs9501203-T	0.677	8E-12				Affymetrix [10369434] (imputed)	N
615	chr6_dbb_hap3	4031517	4031518	rs28986343	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous malignant melanoma	36,760 European ancestry cases, 375,188 European ancestry controls	NA	6p21.32	HLA-DQB2	rs28986343-C	0.952	2E-8		1.1531	NR	Affymetrix, Illumina [NR] (imputed)	N
615	chr6_dbb_hap3	4033670	4033671	rs7749543	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6p21.32	NR	rs7749543-G	0.6269	8E-10		1.0775862	[1.05-1.1]	Affymetrix [15688218] (imputed)	N
615	chr6_dbb_hap3	4033670	4033671	rs7749543	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	6p21.32	NR	rs7749543-?	NR	8E-115	(conditional)			Affymetrix [15688218] (imputed)	N
615	chr6_dbb_hap3	4033670	4033671	rs7749543	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p21.32	NR	rs7749543-?	NR	3E-6		0.0596	[0.035-0.085] unit increase	Illumina [at least 560000] (imputed)	N
615	chr6_dbb_hap3	4040656	4040657	rs7758736	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DOB	rs7758736-A	NR	1E-9		0.02222	[0.015-0.029] unit decrease	Affymetrix [321169] (imputed)	N
615	chr6_dbb_hap3	4043772	4043773	rs4318925	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DOB	rs4318925-T	NR	3E-9		0.0220014	[0.015-0.029] unit decrease	Affymetrix [321169] (imputed)	N
615	chr6_dbb_hap3	4045780	4045781	rs2857151	22446962	Onouchi Y	2012-03-25	Nat Genet	A genome-wide association study identifies three new risk loci for Kawasaki disease.	Kawasaki disease	428 Japanese ancestry cases, 3,379 Japanese ancestry controls	754 Japanese ancestry cases, 947 Japanese ancestry controls	6p21.32	HLA-DOB, HLA-DQB2	rs2857151-G	0.76	5E-11		1.47	[1.23-1.77]	Illumina [463793]	N
615	chr6_dbb_hap3	4046797	4046798	rs62398467	34011352	Schwarm C	2021-05-19	Orphanet J Rare Dis	Identification of two novel bullous pemphigoid- associated alleles, HLA-DQA1*05:05 and -DRB1*07:01, in Germans.	Bullous pemphigoid	438 German cases, 417 German controls	NA	6p21.32	HLA-DQB2, HLA-DOB	rs62398467-?	NR	7E-6		0.520158	[0.29-0.75] unit increase	Affymetrix [up to 386296] (imputed)	N
615	chr6_dbb_hap3	4047843	4047844	rs9276731	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DOB	rs9276731-T	NR	1E-15		0.0382096	[0.029-0.048] unit decrease	Affymetrix [323858] (imputed)	N
615	chr6_dbb_hap3	4047843	4047844	rs9276731	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	HLA-DOB	rs9276731-T	NR	3E-14		0.0364203	[0.027-0.046] unit decrease	Affymetrix [127266] (imputed)	N
615	chr6_dbb_hap3	4047843	4047844	rs9276731	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p21.32	HLA-DOB	rs9276731-T	NR	1E-8		0.0269325	[0.018-0.036] unit decrease	Affymetrix [323858] (imputed)	N
615	chr6_dbb_hap3	4051651	4051652	rs2621363	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6p21.32	NR	rs2621363-T	0.7091	8E-13		1.0481081	[1.04-1.06]	Affymetrix [15688218] (imputed)	N
615	chr6_dbb_hap3	4051651	4051652	rs2621363	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	6p21.32	NR	rs2621363-?	NR	7E-31	(conditional)			Affymetrix [15688218] (imputed)	N
615	chr6_dbb_hap3	4052742	4052743	rs151165576	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Treatment or medication use - insulin product (UKB data field 20003_1140883066)	4,469 European ancestry cases, 451,807 European ancestry controls	NA	6p21.32		rs151165576-A	0.003916	2E-15		1.58	[1.19-1.97] unit increase	NR [11842647] (imputed)	N
615	chr6_dbb_hap3	4053604	4053605	rs2621355	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.32	Intergenic	rs2621355-G	NR	5E-8		0.0202164	[0.013-0.028] unit increase	Illumina [13520550] (imputed)	N
615	chr6_dbb_hap3	4055118	4055119	rs9276757	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.32		rs9276757-A	0.772	8E-30				Affymetrix [10369434] (imputed)	N
615	chr6_dbb_hap3	4059498	4059499	rs1054684	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DOB	rs1054684-C	NR	2E-10		0.0303692	[0.021-0.04] unit increase	Affymetrix [323123] (imputed)	N
615	chr6_dbb_hap3	4059498	4059499	rs1054684	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.32	TAP2, HLA-DOB	rs1054684-C	0.115598	1E-11		0.03328803	[0.024-0.043] unit increase	Affymetrix [93095623] (imputed)	N
615	chr6_dbb_hap3	4059498	4059499	rs1054684	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	6p21.32	NR	rs1054684-C	0.114999	1E-8		0.0591419	[0.038-0.08] unit increase	Affymetrix [17914406] (imputed)	N
615	chr6_dbb_hap3	4060499	4060502	rs144227975	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs144227975-CTTT	0.665	4E-15	(conditional)	0.864	[0.83-0.9]	Illumina [11270530] (imputed)	N
615	chr6_dbb_hap3	4061012	4061013	rs9276796	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6p21.32	NR	rs9276796-G	0.3953	1E-20		1.058	[1.046-1.07]	Affymetrix [15688218] (imputed)	N
615	chr6_dbb_hap3	4061247	4061248	rs1812006	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.32	Intergenic	rs1812006-G	NR	1E-7	(women)	0.0361932	[0.023-0.05] unit decrease	Illumina [13520550] (imputed)	N
615	chr6_dbb_hap3	4062249	4062250	rs11244	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p21.32	HLA-DOB	rs11244-A	0.43	4E-11				Illumina [118177]	N
615	chr6_dbb_hap3	4062637	4062638	rs2071479	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	6p21.32	HLA-DOB	rs2071479-T	0.0273617407137154	7E-11		0.1473	[0.1-0.19] unit increase	NR [5035015] (imputed)	N
616	chr6_dbb_hap3	4063301	4063302	rs2856997	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DOB, TAP2	rs2856997-A	NR	9E-9		0.0165451	[0.011-0.022] unit decrease	Affymetrix [321016] (imputed)	N
616	chr6_dbb_hap3	4064107	4064108	rs2071474	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Strep throat	52,487 European ancestry cases, 22,017 European ancestry controls	NA	6p21.32	NR	rs2071474-?	NR	6E-6		0.027	[0.015-0.039] unit increase	Illumina [at least 560000] (imputed)	N
616	chr6_dbb_hap3	4064130	4064131	rs2071473	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.32		rs2071473-C	0.671	2E-23				Affymetrix [10369434] (imputed)	N
616	chr6_dbb_hap3	4064130	4064131	rs2071473	33106546	Johnson TA	2020-10-26	J Hum Genet	Association of an IGHV3-66 gene variant with Kawasaki disease.	Kawasaki disease	1,276 East Asian ancestry cases, 5,086 East Asian ancestry controls	2,152 East Asian ancestry cases, 2,751 East Asian ancestry controls	6p21.32	HLA-DOB	rs2071473-T	NR	7E-13		1.26	[1.18-1.34]	Affymetrix, Illumina [6265045] (imputed)	N
616	chr6_dbb_hap3	4064611	4064612	rs7383287	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in ever smokers	23,223 European ancestry cases,  16,964 European ancestry controls	NA	6p21.32	HLA-DOB	rs7383287-G	0.224903192	1E-10		1.1205634	[1.082275651-1.160205575]	Illumina [10439017] (imputed)	N
616	chr6_dbb_hap3	4064611	4064612	rs7383287	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	6p21.32	NR	rs7383287-A	NR	1E-7		1.07	[NR]	Illumina [7158791] (imputed)	N
616	chr6_dbb_hap3	4064930	4064931	rs1383258	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p21.32	HLA-DOB	rs1383258-A	0.04	2E-10	(EA)	3.68	[2.40-5.64]	Illumina [up to 547389]	N
616	chr6_dbb_hap3	4066308	4066309	rs2071469	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Chronic lymphocytic leukemia	764 White British ancestry cases, 272,079 White British ancestry controls	NA	6p21.32		rs2071469-?	NR	7E-6		0.775782	[0.67-0.89]	NR [663083]	N
616	chr6_dbb_hap3	4068442	4068443	rs3763354	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	6p21.32	Intergenic	rs3763354-G	NR	4E-12		0.0433868	[0.031-0.056] unit decrease	Illumina [13520550] (imputed)	N
616	chr6_dbb_hap3	4068561	4068562	rs1894407	24586183	Medici M	2014-02-27	PLoS Genet	Identification of novel genetic Loci associated with thyroid peroxidase antibodies and clinical thyroid disease.	Thyroid peroxidase antibody positivity	1,769 European ancestry cases, 16,528 European ancestry controls	922 European ancestry cases, 8,068 European ancestry controls	6p21.32	NR	rs1894407-C		1E-7		1.17	[1.11-1.24]	Affymetrix, Illumina [up to 3437411] (imputed)	N
616	chr6_dbb_hap3	4068700	4068701	rs9784858	26272072	Jiang X	2015-08-13	Rheumatology (Oxford)	An Immunochip-based interaction study of contrasting interaction effects with smoking in ACPA-positive versus ACPA-negative rheumatoid arthritis.	ACPA-positive rheumatoid arthritis (smoking interaction)	340 European ancestry never-smoker cases, 493 European ancestry ever-smoker cases, 746 European ancestry never-smoker controls, 994 European ancestry ever-smoker controls	187 European ancestry never-smoker cases, 421 European ancestry ever-smoker cases, 461 European ancestry never-smoker controls, 447 European ancestry ever-smoker controls	6p21.32	NR	rs9784858-?	NR	9E-12	(adjusted for HLA shared epitope)	1.4084507	[1.09-1.96]	Illumina [133648] (imputed)	N
616	chr6_dbb_hap3	4070237	4070238	rs2621322	30552173	Aterido A	2018-12-14	Ann Rheum Dis	Genetic variation at the glycosaminoglycan metabolism pathway contributes to the risk of psoriatic arthritis but not psoriasis.	Psoriatic arthritis	744 Spanish ancestry cases, 1,454 Spanish ancestry controls	1,430 cases, 1,417 controls	6p21.32	NR	rs2621322-?	NR	2E-8		5.6	[NR] z-score decrease	Illumina [1387382] (imputed)	N
616	chr6_dbb_hap3	4070925	4070926	rs151027268	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.32	NR	rs151027268-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
616	chr6_dbb_hap3	4075068	4075069	rs13501	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	TAP2	rs13501-A	NR	3E-9		0.0199818	[0.013-0.027] unit decrease	Affymetrix [323123] (imputed)	N
616	chr6_dbb_hap3	4076577	4076578	rs10484565	26272072	Jiang X	2015-08-13	Rheumatology (Oxford)	An Immunochip-based interaction study of contrasting interaction effects with smoking in ACPA-positive versus ACPA-negative rheumatoid arthritis.	ACPA-positive rheumatoid arthritis (smoking interaction)	340 European ancestry never-smoker cases, 493 European ancestry ever-smoker cases, 746 European ancestry never-smoker controls, 994 European ancestry ever-smoker controls	187 European ancestry never-smoker cases, 421 European ancestry ever-smoker cases, 461 European ancestry never-smoker controls, 447 European ancestry ever-smoker controls	6p21.32	NR	rs10484565-?	NR	7E-10	(adjusted for HLA shared epitope)	1.4285715	[1.09-2.13]	Illumina [133648] (imputed)	N
616	chr6_dbb_hap3	4077594	4077595	rs241453	32492067	Ruffieux H	2020-06-03	PLoS Comput Biol	A fully joint Bayesian quantitative trait locus mapping of human protein abundance in plasma.	Protein quantitative trait loci	376 European ancestry individuals	400 European ancestry individuals	6p21.32	NR	rs241453-?	NR	2E-6	(C4a)			Illumina [~ 4000000] (imputed)	N
616	chr6_dbb_hap3	4078493	4078494	rs241443	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	6p21.32	TAP2	rs241443-G	0.294917	2E-19		0.022992264	[0.018-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
616	chr6_dbb_hap3	4079151	4079152	rs2228391	26151496	Chen PL	2015-07-07	Nat Commun	Genetic determinants of antithyroid drug-induced agranulocytosis by human leukocyte antigen genotyping and genome-wide association study.	Thionamide-induced agranulocytosis in Graves' disease	21 East Asian ancestry cases with agranulocytosis, 662 East Asian ancestry cases without agranulocytosis	21 East Asian ancestry cases with agranulocytosis, 546 East Asian ancestry cases without agranulocytosis	6p21.32	HLA	rs2228391-C	0.108	4E-7	(trend)	3.32	[2.02-5.46] (allelic)	Affymetrix [522980]	N
616	chr6_dbb_hap3	4079254	4079255	rs241436	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6p21.32		rs241436-?	NR	7E-9		1.06498	[1.04-1.09]	NR [685523]	N
616	chr6_dbb_hap3	4079254	4079255	rs241436	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in lean individuals	up to 5,529 European ancestry male individuals, up to 9,753 European ancestry female individuals	NA	6p21.32	TAP2	rs241436-G	0.49	8E-6	(men)	0.089	[0.05-0.128] kg/m2 increase	Affymetrix, Illumina [at least 188473] (imputed)	N
616	chr6_dbb_hap3	4081223	4081224	rs60045856	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	6p21.32	NR	rs60045856-G	0.11004825178496	5E-12		0.0101193655	[0.0072-0.013] unit decrease	NR [NR]	N
616	chr6_dbb_hap3	4081223	4081224	rs60045856	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p21.32	NR	rs60045856-?	NR	3E-8		0.0829	[0.054-0.112] unit increase	Illumina [at least 560000] (imputed)	N
616	chr6_dbb_hap3	4083840	4083841	rs62397688	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	IgA nephropathy	1,180 East Asian ancestry cases, 899 East Asian ancestry controls	NA			rs62397688-A	NR	4E-6		0.58857	[0.34-0.84] unit decrease	Illumina [NR] (imputed)	N
616	chr6_dbb_hap3	4084185	4084186	rs4148872	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Diastolic blood pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	6p21.32	HLA	rs4148872-T	0.148057452	2E-7		0.2012	[0.13-0.28] unit increase	Affymetrix [~ 9800000] (imputed)	N
616	chr6_dbb_hap3	4084786	4084787	rs28724898	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p21.32	NR	rs28724898-?	NR	4E-13		0.1556	[0.11-0.2] unit decrease	Illumina [at least 560000] (imputed)	N
616	chr6_dbb_hap3	4085218	4085219	rs241429	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	TAP2	rs241429-A	NR	3E-8		0.0169285	[0.011-0.023] unit increase	Affymetrix [323123] (imputed)	N
616	chr6_dbb_hap3	4085448	4085449	rs241428	23028341	Yang X	2012-09-13	PLoS Genet	Genome-wide association study for serum complement C3 and C4 levels in healthy Chinese subjects.	Complement C3 and C4 levels	1,999 Han Chinese ancestry male individuals	1,496 Han Chinese ancestry male individuals	6p21.32	HLA-DQB	rs241428-G	0.08	9E-83	(Serum level of C4)	0.23	[0.21-0.25] g/L increase	Illumina [1940245] (imputed)	N
616	chr6_dbb_hap3	4085597	4085598	rs3819715	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (mother's age at death or mother's attained age)	up to 699,000 individuals	NA	6p21.32	NR	rs3819715-C		7E-6				Illumina [458525]	N
616	chr6_dbb_hap3	4085677	4085678	rs3819717	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (non-Lofgren's syndrome without extrapulmonary manifestations)	451 Swedish ancestry cases, 2,086 Swedish ancestry controls	NA	6p21.32	TAP2, PSMB9, HLA-DMB, HLA-DPB1	rs3819717-G	0.515	2E-6		1.434	[1.249-1.648]	Illumina [118177]	N
616	chr6_dbb_hap3	4085792	4085793	rs241427	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p21.32	TAP2	rs241427-G	0.797	4E-6		0.062	[0.035-0.089] unit decrease	Affymetrix, Illumina [7374092] (imputed)	N
616	chr6_dbb_hap3	4085948	4085949	rs3819720	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.32	NR	rs3819720-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
616	chr6_dbb_hap3	4085948	4085949	rs3819720	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs3819720-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
616	chr6_dbb_hap3	4085948	4085949	rs3819720	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p21.32	NR	rs3819720-?	NR	1E-12		0.1645	[0.12-0.21] unit decrease	Illumina [at least 560000] (imputed)	N
616	chr6_dbb_hap3	4086257	4086258	rs1871665	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.32		rs1871665-T	0.55322	1E-12		1.0307605	[1.02-1.04]	Affymetrix, Illumina [9851866] (imputed)	N
616	chr6_dbb_hap3	4086427	4086428	rs2239701	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	Composite immunoglobulin trait (IgA/IgG)	14,183 Icelandic ancestry individuals	2,146 Swedish ancestry individuals	6p21.32	TAP2	rs2239701-C	0.368	3E-10		0.08	NR SD units decrease	Illumina [21568490] (imputed)	N
616	chr6_dbb_hap3	4086685	4086686	rs2071466	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.32		rs2071466-C	0.704	1E-10				Affymetrix [10369434] (imputed)	N
616	chr6_dbb_hap3	4086685	4086686	rs2071466	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p21.32	TAP2	rs2071466-T		1E-24		0.024	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
616	chr6_dbb_hap3	4087766	4087767	rs4148870	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p21.32	TAP2	rs4148870-C	0.402	2E-6		0.053	[0.031-0.075] unit increase	Affymetrix, Illumina [7374092] (imputed)	N
616	chr6_dbb_hap3	4087928	4087929	rs74365910	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Ulcerative colitis (PheCode 555.2)	2,569 European ancestry cases, 453,779 European ancestry controls	NA	6p21.32		rs74365910-A	0.009189	9E-10		0.97	[0.66-1.28] unit increase	NR [11842647] (imputed)	N
616	chr6_dbb_hap3	4087928	4087929	rs74365910	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Treatment or medication use - levothyroxine sodium (UKB data field 20003_1141191044)	18,688 European ancestry cases, 437,588 European ancestry controls	NA	6p21.32		rs74365910-A	0.009068	2E-15		0.46	[0.35-0.57] unit increase	NR [11842647] (imputed)	N
616	chr6_dbb_hap3	4088867	4088868	rs114595701	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	6p21.32	NR	rs114595701-T	0.0925422107617213	2E-9		0.012502657	[0.0084-0.0166] unit decrease	NR [NR]	N
616	chr6_dbb_hap3	4088867	4088868	rs114595701	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	6p21.32	NR	rs114595701-T	0.0925422107617213	6E-9		0.013367118	[0.0089-0.0179] unit decrease	NR [NR]	N
616	chr6_dbb_hap3	4088867	4088868	rs114595701	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	6p21.32	NR	rs114595701-T	0.0925422107617213	2E-9		0.010604257	[0.0071-0.0141] unit decrease	NR [NR]	N
616	chr6_dbb_hap3	4089676	4089677	rs45506201	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	6p21.32	NR	rs45506201-A	0.0926176111889165	4E-9		0.015973978	[0.011-0.021] unit decrease	NR [NR]	N
616	chr6_dbb_hap3	4091225	4091226	rs9357155	21399633	Gharavi AG	2011-03-13	Nat Genet	Genome-wide association study identifies susceptibility loci for IgA nephropathy.	Nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls	712 Han Chinese ancestry cases, 748 Han Chinese ancestry controls, 1,238 European ancestry cases, 1,172 European ancestry controls	6p21.32	TAP2, TAP1, PSMB8, PSMB9	rs9357155-?	0.87 (EA)	2E-12		1.41	[NR]	Illumina [498322]	N
616	chr6_dbb_hap3	4093006	4093007	rs2071543	32912934	Li M	2020-09-10	J Am Soc Nephrol	Genome-Wide Meta-Analysis Identifies Three Novel Susceptibility Loci and Reveals Ethnic Heterogeneity of Genetic Susceptibility for IgA Nephropathy.	IgA nephropathy	2,628 Chinese ancestry cases, 11,563 Chinese ancestry controls	6,879 Han Chinese ancestry cases, 9,019 Han Chinese ancestry controls, 1,039 Italian ancestry cases, 1,289 Italian ancestry controls	6p21.32	PSMB8	rs2071543-G	0.8187836227622588	1E-6	(East Asian)	1.2505606	[1.14305470436016-1.36817776509077]	NR [3611808] (imputed)	N
616	chr6_dbb_hap3	4093006	4093007	rs2071543	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	6p21.32	PSMB9, TAP1, TAP2, PSMB8	rs2071543-G	0.80	2E-9	(East Asian)	1.41	[NR]	Illumina [> 1000000] (imputed)	N
616	chr6_dbb_hap3	4093905	4093906	rs2071463	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	6p21.32		rs2071463-?	NR	5E-8				Affymetrix [NR] (imputed)	N
616	chr6_dbb_hap3	4099405	4099406	rs113206908	32771030	Tangtanatakul P	2020-08-08	Arthritis Res Ther	Meta-analysis of genome-wide association study identifies FBN2 as a novel locus associated with systemic lupus erythematosus in Thai population.	Systemic lupus erythematosus	487 Thai cases, 1,606 Thai controls	405 Thai cases, 1,590 Thai controls	6p21.32	PSMB9	rs113206908-G	0.21	4E-7		1.4327	[NR]	Illumina [421909] (imputed)	N
616	chr6_dbb_hap3	4100053	4100054	rs2071538	32534018	Liu X	2020-06-10	Brain Behav Immun	Genetic factors underlying the bidirectional relationship between autoimmune and mental disorders - findings from a Danish population-based study.	Autoimmune traits	1,383 Danish ancestry cases, 62,656 Danish ancestry controls	NA	6p21.32	NR	rs2071538-A	0.24	8E-10		0.74	[0.67-0.82]	NR [7721839] (imputed)	N
616	chr6_dbb_hap3	4102824	4102825	rs2071536	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	PSMB9, TAP1	rs2071536-T	NR	5E-8		0.0260034	[0.017-0.035] unit decrease	Affymetrix [323123] (imputed)	N
616	chr6_dbb_hap3	4102824	4102825	rs2071536	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.32		rs2071536-T	0.111873	8E-10		1.0421276	[1.03-1.05]	Affymetrix, Illumina [9851866] (imputed)	N
616	chr6_dbb_hap3	4103621	4103622	rs17220241	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.32	HLA-Z, TAP2, PSMB9, PSMB8-AS1, XXbac-BPG246D15.9, TAP1, PSMB8	rs17220241-T	0.02156469	1E-21	(EA, Alpha-2-macroglobulin receptor-associated protein)	1.387	[1.11-1.66] unit increase	Affymetrix [509946]	N
616	chr6_dbb_hap3	4111390	4111391	rs7767288	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	6p21.32	PSMB9	rs7767288-A	0.4112	1E-11		0.02464776	[0.018-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
616	chr6_dbb_hap3	4114163	4114164	rs1055559	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	6p21.32	NR	rs1055559-?	NR	9E-7		0.079	[0.047-0.111] unit increase	Illumina [at least 560000] (imputed)	N
616	chr6_dbb_hap3	4114163	4114164	rs1055559	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	6p21.32	Intergenic	rs1055559-T	NR	4E-9		0.039613	[0.026-0.053] unit decrease	Illumina [13520550] (imputed)	N
616	chr6_dbb_hap3	4124309	4124310	rs6903433	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.32		rs6903433-C	0.87	7E-9				Affymetrix [10369434] (imputed)	N
616	chr6_dbb_hap3	4133978	4133979	rs2187689	22993228	Williams FM	2012-09-19	Ann Rheum Dis	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NA	6p21.32	PSMB9	rs2187689-C	0.08	3E-8		0.23	[0.15-0.31] unit increase	Affymetrix, Illumina [2552511] (imputed)	N
616	chr6_dbb_hap3	4134610	4134611	rs7767732	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.32		rs7767732-C	0.822	3E-21				Affymetrix [10369434] (imputed)	N
616	chr6_dbb_hap3	4136022	4136023	rs10046257	22993228	Williams FM	2012-09-19	Ann Rheum Dis	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NA	6p21.32	intergenic	rs10046257-A	0.10	3E-7		0.19	[0.12-0.26] unit increase	Affymetrix, Illumina [2552511] (imputed)	N
616	chr6_dbb_hap3	4137042	4137043	rs6457690	22993228	Williams FM	2012-09-19	Ann Rheum Dis	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NA	6p21.32	intergenic	rs6457690-A	0.10	9E-8		0.19	[0.12-0.26] unit increase	Affymetrix, Illumina [2552511] (imputed)	N
616	chr6_dbb_hap3	4137706	4137707	rs1029296	22993228	Williams FM	2012-09-19	Ann Rheum Dis	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NA	6p21.32	intergenic	rs1029296-C	0.10	9E-8		0.19	[0.12-0.26] unit increase	Affymetrix, Illumina [2552511] (imputed)	N
616	chr6_dbb_hap3	4137807	4137808	rs1029295	22993228	Williams FM	2012-09-19	Ann Rheum Dis	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NA	6p21.32	intergenic	rs1029295-C	0.10	5E-7		0.19	[0.12-0.26] unit increase	Affymetrix, Illumina [2552511] (imputed)	N
616	chr6_dbb_hap3	4138259	4138260	rs6936004	22993228	Williams FM	2012-09-19	Ann Rheum Dis	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NA	6p21.32	intergenic	rs6936004-C	0.10	1E-7		0.19	[0.12-0.26] unit increase	Affymetrix, Illumina [2552511] (imputed)	N
616	chr6_dbb_hap3	4138744	4138745	rs10214886	22993228	Williams FM	2012-09-19	Ann Rheum Dis	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NA	6p21.32	intergenic	rs10214886-A	0.10	2E-7		0.19	[0.12-0.26] unit increase	Affymetrix, Illumina [2552511] (imputed)	N
616	chr6_dbb_hap3	4138861	4138862	rs10214760	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6p21.32	TAP1	rs10214760-?	NR	3E-6	(dimethylglycine)	0.3002602	[0.17-0.43] unit decrease	Affymetrix [at least 2500000] (imputed)	N
616	chr6_dbb_hap3	4141037	4141038	rs7744666	22993228	Williams FM	2012-09-19	Ann Rheum Dis	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NA	6p21.32	intergenic	rs7744666-C	0.10	6E-8		0.2	[0.13-0.27] unit increase	Affymetrix, Illumina [2552511] (imputed)	N
616	chr6_dbb_hap3	4141073	4141074	rs11969002	22993228	Williams FM	2012-09-19	Ann Rheum Dis	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NA	6p21.32	intergenic	rs11969002-A	0.10	6E-8		0.2	[0.13-0.27] unit increase	Affymetrix, Illumina [2552511] (imputed)	N
616	chr6_dbb_hap3	4142077	4142078	rs9469300	22993228	Williams FM	2012-09-19	Ann Rheum Dis	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NA	6p21.32	intergenic	rs9469300-A	0.10	1E-7		0.19	[0.12-0.26] unit increase	Affymetrix, Illumina [2552511] (imputed)	N
616	chr6_dbb_hap3	4143932	4143933	rs3749982	22993228	Williams FM	2012-09-19	Ann Rheum Dis	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NA	6p21.32	intergenic	rs3749982-A	0.10	1E-7		0.19	[0.12-0.26] unit increase	Affymetrix, Illumina [2552511] (imputed)	N
616	chr6_dbb_hap3	4147420	4147421	rs9276916	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	Systemic lupus erythematosus	1,639 East Asian ancestry cases, 2,410 East Asian ancestry controls	NA			rs9276916-G	NR	2E-8		0.2244	[0.15-0.3] unit increase	Illumina [NR] (imputed)	N
616	chr6_dbb_hap3	4151383	4151384	rs3101942	26297903	Fabbri C	2015-08-20	Prog Neuropsychopharmacol Biol Psychiatry	Genetics of long-term treatment outcome in bipolar disorder.	Manic episodes in bipolar disorder	706 European ancestry cases	NA	6p21.32	LOC100294145	rs3101942-?	NR	7E-6		1.733	[1.365-2.201]	Affymetrix [329806] (imputed)	N
616	chr6_dbb_hap3	4154245	4154246	rs574560492	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs574560492-?	NR	5E-8				Affymetrix [~ 8270000] (imputed)	N
616	chr6_dbb_hap3	4169572	4169573	rs117231810	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.32	Intergenic	rs117231810-?		4E-6		1.06	[1.03-1.08]	Illumina [7645193] (imputed)	N
616	chr6_dbb_hap3	4169572	4169573	rs117231810	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.32	Intergenic	rs117231810-?		1E-6		1.69	[1.37-2.09]	Illumina [7645193] (imputed)	N
616	chr6_dbb_hap3	4172674	4172675	rs194679	32534018	Liu X	2020-06-10	Brain Behav Immun	Genetic factors underlying the bidirectional relationship between autoimmune and mental disorders - findings from a Danish population-based study.	Autoimmune traits	1,383 Danish ancestry cases, 62,656 Danish ancestry controls	NA	6p21.32	NR	rs194679-T	0.047	1E-9		1.62	[1.4-1.87]	NR [7721839] (imputed)	N
616	chr6_dbb_hap3	4181720	4181722	rs57390839	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	6p21.32	PSMB9, HLA-DMB	rs57390839-?	NR	2E-15		0.303437	[0.23-0.38] unit increase	Illumina [at least 950000] (imputed)	N
616	chr6_dbb_hap3	4181720	4181722	rs57390839	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p21.32	NR	rs57390839-?	NR	1E-7		0.0931	[0.058-0.128] unit increase	Illumina [at least 560000] (imputed)	N
616	chr6_dbb_hap3	4185375	4185376	rs77318243	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DMB	rs77318243-A	NR	3E-11		0.0352508	[0.025-0.046] unit decrease	Affymetrix [323858] (imputed)	N
616	chr6_dbb_hap3	4185375	4185376	rs77318243	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	HLA-DMB	rs77318243-A	NR	2E-10		0.0339654	[0.024-0.044] unit decrease	Affymetrix [127266] (imputed)	N
616	chr6_dbb_hap3	4189309	4189310	rs147725790	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6p21.32	NR	rs147725790-T	0.98229	2E-12		1.1804981	[1.13-1.23]	Affymetrix [15688218] (imputed)	N
616	chr6_dbb_hap3	4192666	4192667	rs116560929	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.32	NR	rs116560929-A	0.01045	3E-9	(FHL1)	0.008308	NR unit increase	Illumina [1671387] (imputed)	N
616	chr6_dbb_hap3	4192666	4192667	rs116560929	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.32	NR	rs116560929-A	0.01045	3E-10	(TAGLN)	0.4341	NR unit increase	Illumina [1671387] (imputed)	N
616	chr6_dbb_hap3	4192666	4192667	rs116560929	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.32	NR	rs116560929-A	0.01045	2E-8	(CNN2)	0.01914	NR unit increase	Illumina [1671387] (imputed)	N
616	chr6_dbb_hap3	4193151	4193152	rs2395296	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs2395296-A	NR	9E-8		1.089	[1.055-1.124]	Affymetrix [7846216] (imputed)	N
617	chr6_dbb_hap3	4194583	4194584	rs1480380	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p21.32	HLA-DMB, HLA-DMA	rs1480380-A	0.252	6E-23				Illumina [118177]	N
617	chr6_dbb_hap3	4194583	4194584	rs1480380	23453885	Smoller JW	2013-02-27	Lancet	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NA	6p21.32	NR	rs1480380-C	0.908	6E-7	(Modelling analysis)			NR [1252901] (imputed)	N
617	chr6_dbb_hap3	4194583	4194584	rs1480380	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.32	intergenic	rs1480380-T	0.0877	4E-39		3.05	[NR]	Illumina [242824]	N
617	chr6_dbb_hap3	4196063	4196064	rs73396800	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	6p21.32	NR	rs73396800-G	NR	4E-16		1.1904762	[NR]	Illumina [7158791] (imputed)	N
617	chr6_dbb_hap3	4197188	4197189	rs16871226	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	NR	rs16871226-G	0.0244821228239845	2E-6	(IGP67)	0.5182	[0.3-0.73] unit increase	Illumina [~ 2500000] (imputed)	N
617	chr6_dbb_hap3	4199796	4199797	rs12153970	26584805	Dorajoo R	2015-11-19	Genes Nutr	A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.	Plasma omega-3 polyunsaturated fatty acid levels (docosahexaenoic acid)	717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls	NA	6p21.32	NR	rs12153970-G	0.9496	4E-6		0.2241	[0.13-0.32] unit increase	Illumina [up to 1980188] (imputed)	N
617	chr6_dbb_hap3	4200915	4200916	rs146693865	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.32	NR	rs146693865-G	0.01045	3E-9	(FHL1)	0.008308	NR unit increase	Illumina [1671387] (imputed)	N
617	chr6_dbb_hap3	4200915	4200916	rs146693865	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.32	NR	rs146693865-G	0.01045	3E-10	(TAGLN)	0.4341	NR unit increase	Illumina [1671387] (imputed)	N
617	chr6_dbb_hap3	4200915	4200916	rs146693865	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.32	NR	rs146693865-G	0.01045	2E-8	(CNN2)	0.01914	NR unit increase	Illumina [1671387] (imputed)	N
617	chr6_dbb_hap3	4203799	4203800	rs9378127	30552173	Aterido A	2018-12-14	Ann Rheum Dis	Genetic variation at the glycosaminoglycan metabolism pathway contributes to the risk of psoriatic arthritis but not psoriasis.	Psoriatic arthritis	744 Spanish ancestry cases, 1,454 Spanish ancestry controls	1,430 cases, 1,417 controls	6p21.32	NR	rs9378127-?	NR	4E-7		5.07	[NR] z-score increase	Illumina [1387382] (imputed)	N
617	chr6_dbb_hap3	4205924	4205925	rs209474	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.32		rs209474-A	0.623	4E-15				Affymetrix [10369434] (imputed)	N
617	chr6_dbb_hap3	4205924	4205925	rs209474	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	6p21.32	HLA-DMA	rs209474-G	0.377123	1E-12		0.016615335	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
617	chr6_dbb_hap3	4205924	4205925	rs209474	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	6p21.32	HLA-DMA	rs209474-G	0.377106	6E-15		0.018046945	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
617	chr6_dbb_hap3	4205924	4205925	rs209474	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	6p21.32	NR	rs209474-A	0.624456	7E-9		0.0127924	[0.0085-0.0171] unit decrease	NR [NR]	N
617	chr6_dbb_hap3	4205924	4205925	rs209474	29121268	Amare AT	2017-11-09	JAMA Psychiatry	Association of Polygenic Score for Schizophrenia and HLA Antigen and Inflammation Genes With Response to Lithium in Bipolar Affective Disorder: A Genome-Wide Association Study.	Bipolar disorder lithium response (continuous) or schizophrenia	2,366 European ancestry lithium treated bipolar disorder cases, 220 Asian ancestry lithium treated bipolar disorder cases, 36,989 schizophrenia cases, controls (see Ripke et al 2014 PMID:25056061)	NA	6p21.32	HLA, DMA	rs209474-A		2E-8				NR [NR] (imputed)	N
617	chr6_dbb_hap3	4227367	4227368	rs34530779	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.32	NR	rs34530779-A	0.01045	3E-9	(FHL1)	0.008308	NR unit increase	Illumina [1671387] (imputed)	N
617	chr6_dbb_hap3	4227367	4227368	rs34530779	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.32	NR	rs34530779-A	0.01045	3E-10	(TAGLN)	0.4341	NR unit increase	Illumina [1671387] (imputed)	N
617	chr6_dbb_hap3	4227367	4227368	rs34530779	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.32	NR	rs34530779-A	0.01045	2E-8	(CNN2)	0.01914	NR unit increase	Illumina [1671387] (imputed)	N
617	chr6_dbb_hap3	4227660	4227661	rs76088152	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p21.32	NR	rs76088152-?	NR	8E-9		0.2377	[0.16-0.32] unit decrease	Illumina [at least 560000] (imputed)	N
617	chr6_dbb_hap3	4230145	4230146	rs1049526	28008999	Ostrowski J	2016-12-23	Sci Rep	Genetic architecture differences between pediatric and adult-onset inflammatory bowel diseases in the Polish population.	Ulcerative colitis	269 Polish ancestry child cases, 259 Polish ancestry adult cases, 582 Polish ancestry controls	121 Polish ancestry child cases, 85 Polish ancestry adult cases, 352 Polish ancestry controls	6p21.32	BRD2	rs1049526-?		3E-7	(Adults)	2.697503	[1.87-3.90]	Illumina [2612357]	N
617	chr6_dbb_hap3	4230145	4230146	rs1049526	28008999	Ostrowski J	2016-12-23	Sci Rep	Genetic architecture differences between pediatric and adult-onset inflammatory bowel diseases in the Polish population.	Ulcerative colitis	269 Polish ancestry child cases, 259 Polish ancestry adult cases, 582 Polish ancestry controls	121 Polish ancestry child cases, 85 Polish ancestry adult cases, 352 Polish ancestry controls	6p21.32	BRD2	rs1049526-?		2E-8		2.3810558	[1.74-3.26]	Illumina [2612357]	N
617	chr6_dbb_hap3	4230145	4230146	rs1049526	28008999	Ostrowski J	2016-12-23	Sci Rep	Genetic architecture differences between pediatric and adult-onset inflammatory bowel diseases in the Polish population.	Inflammatory bowel disease	622 Polish ancestry child cases, 496 Polish ancestry adult cases, 582 Polish ancestry controls	192 Polish ancestry child cases, 185 Polish ancestry adult cases, 352 Polish ancestry controls	6p21.32	BRD2	rs1049526-?	NR	9E-10	(Adult)	2.659634	[1.93-3.66]	Illumina [2612357]	N
617	chr6_dbb_hap3	4230145	4230146	rs1049526	28008999	Ostrowski J	2016-12-23	Sci Rep	Genetic architecture differences between pediatric and adult-onset inflammatory bowel diseases in the Polish population.	Inflammatory bowel disease	622 Polish ancestry child cases, 496 Polish ancestry adult cases, 582 Polish ancestry controls	192 Polish ancestry child cases, 185 Polish ancestry adult cases, 352 Polish ancestry controls	6p21.32	BRD2	rs1049526-?	NR	5E-11		2.434453	[1.83-3.24]	Illumina [2612357]	N
617	chr6_dbb_hap3	4230145	4230146	rs1049526	28008999	Ostrowski J	2016-12-23	Sci Rep	Genetic architecture differences between pediatric and adult-onset inflammatory bowel diseases in the Polish population.	Inflammatory bowel disease	622 Polish ancestry child cases, 496 Polish ancestry adult cases, 582 Polish ancestry controls	192 Polish ancestry child cases, 185 Polish ancestry adult cases, 352 Polish ancestry controls	6p21.32	BRD2	rs1049526-?	NR	2E-8	(Children)	2.3504539	[1.73-3.19]	Illumina [2612357]	N
617	chr6_dbb_hap3	4230145	4230146	rs1049526	28008999	Ostrowski J	2016-12-23	Sci Rep	Genetic architecture differences between pediatric and adult-onset inflammatory bowel diseases in the Polish population.	Crohn's disease	353 Polish ancestry child cases, 237 Polish ancestry adult cases, 582 Polish ancestry controls	71 Polish ancestry child cases, 100 Polish ancestry adult cases, 352 Polish ancestry controls	6p21.32	BRD2	rs1049526-?	NR	5E-9		2.4428785	[1.79-3.33]	Illumina [2612357]	N
617	chr6_dbb_hap3	4230145	4230146	rs1049526	28008999	Ostrowski J	2016-12-23	Sci Rep	Genetic architecture differences between pediatric and adult-onset inflammatory bowel diseases in the Polish population.	Crohn's disease	353 Polish ancestry child cases, 237 Polish ancestry adult cases, 582 Polish ancestry controls	71 Polish ancestry child cases, 100 Polish ancestry adult cases, 352 Polish ancestry controls	6p21.32	BRD2	rs1049526-?	NR	3E-7	(Children)	2.4273632	[1.72-3.42]	Illumina [2612357]	N
617	chr6_dbb_hap3	4230145	4230146	rs1049526	28008999	Ostrowski J	2016-12-23	Sci Rep	Genetic architecture differences between pediatric and adult-onset inflammatory bowel diseases in the Polish population.	Crohn's disease	353 Polish ancestry child cases, 237 Polish ancestry adult cases, 582 Polish ancestry controls	71 Polish ancestry child cases, 100 Polish ancestry adult cases, 352 Polish ancestry controls	6p21.32	BRD2	rs1049526-?	NR	3E-6	(Adults)	2.530363	[1.73-3.70]	Illumina [2612357]	N
617	chr6_dbb_hap3	4234621	4234622	rs3097645	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	NR	rs3097645-C	0.87438328769575	7E-6	(IGP59)	0.2057	[0.12-0.3] unit increase	Illumina [~ 2500000] (imputed)	N
617	chr6_dbb_hap3	4234621	4234622	rs3097645	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	NR	rs3097645-C	0.874270331235955	2E-6	(IGP42)	0.2151	[0.13-0.3] unit decrease	Illumina [~ 2500000] (imputed)	N
617	chr6_dbb_hap3	4234621	4234622	rs3097645	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	NR	rs3097645-C	0.874157767431399	5E-6	(IGP2)	0.2092	[0.12-0.3] unit decrease	Illumina [~ 2500000] (imputed)	N
617	chr6_dbb_hap3	4234621	4234622	rs3097645	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	NR	rs3097645-C	0.873857556055831	6E-6	(IGP16)	0.2057	[0.12-0.29] unit decrease	Illumina [~ 2500000] (imputed)	N
617	chr6_dbb_hap3	4234621	4234622	rs3097645	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	NR	rs3097645-C	0.873550828800713	6E-6	(IGP61)	0.206	[0.12-0.3] unit increase	Illumina [~ 2500000] (imputed)	N
617	chr6_dbb_hap3	4234621	4234622	rs3097645	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	NR	rs3097645-C	0.873514573726542	3E-6	(IGP58)	0.2131	[0.12-0.3] unit increase	Illumina [~ 2500000] (imputed)	N
617	chr6_dbb_hap3	4234621	4234622	rs3097645	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	NR	rs3097645-C	0.872971129118433	6E-7	(IGP65)	0.2253	[0.14-0.31] unit increase	Illumina [~ 2500000] (imputed)	N
617	chr6_dbb_hap3	4241366	4241367	rs3130600	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	6p21.32	NR	rs3130600-?	NR	2E-6		0.079	[0.046-0.112] unit increase	Illumina [at least 560000] (imputed)	N
617	chr6_dbb_hap3	4241836	4241837	rs140545087	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	6p21.32	NR	rs140545087-?	NR	3E-10				Affymetrix [~ 8270000] (imputed)	N
617	chr6_dbb_hap3	4241836	4241837	rs140545087	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs140545087-?	NR	5E-9				Affymetrix [~ 8270000] (imputed)	N
617	chr6_dbb_hap3	4242703	4242704	rs9500927	21804548	Hirota T	2011-07-31	Nat Genet	Genome-wide association study identifies three new susceptibility loci for adult asthma in the Japanese population.	Asthma	1,532 Japanese ancestry cases, 3,304 Japanese ancestry controls	5,639 Japanese ancestry cases, 24,608 Japanese ancestry controls	6p21.32	HLA-DOA	rs9500927-T	0.26	4E-9		1.13	[1.09-1.18]	Illumina [458847]	N
617	chr6_dbb_hap3	4242963	4242964	rs172275	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	334,944 European ancestry, NR ancestry individuals	NA	6p21.32		rs172275-?	NR	5E-8				Affymetrix [NR] (imputed)	N
617	chr6_dbb_hap3	4244225	4244226	rs11757367	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.32		rs11757367-G	0.832	3E-15				Affymetrix [10369434] (imputed)	N
617	chr6_dbb_hap3	4248047	4248048	rs35520555	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.32		rs35520555-A	0.886	3E-8				Affymetrix [10369434] (imputed)	N
617	chr6_dbb_hap3	4253752	4253753	rs3128935	24024966	Teumer A	2013-08-14	J Clin Periodontol	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (CDC/AAP)	up to 3,915 European ancestry individuals	NA	6p21.32	HLA-DOA	rs3128935-T	0.97	9E-6	(Age 20-60 years)	2.28	[1.59-3.28]	Affymetrix, Illumina [up to 17585496] (imputed)	N
617	chr6_dbb_hap3	4254947	4254948	rs9276975	25758996	Pirastu N	2015-03-11	Eur J Hum Genet	Genome-wide association analysis on five isolated populations identifies variants of the HLA-DOA gene associated with white wine liking.	White wine liking	381 Carlantino (founder/genetic isolated) individuals, 744 Friuli Venezia Giulia (founder/genetic isolated) individuals, 1,115 Val Borbera (founder/genetic isolated) individuals	1,261 Erasmus Rucphen (founder/genetic isolated) individuals, 335 Silk Road individuals	6p21.32	HLA-DOA	rs9276975-T	0.15	2E-8		0.0539	[NR] unit increase	Illumina [9969492] (imputed)	N
617	chr6_dbb_hap3	4254947	4254948	rs9276975	25758996	Pirastu N	2015-03-11	Eur J Hum Genet	Genome-wide association analysis on five isolated populations identifies variants of the HLA-DOA gene associated with white wine liking.	Red wine liking	398 Carlantino (founder/genetic isolated) individuals, 751 Friuli Venezia Giulia (founder/genetic isolated) individuals, 1,122 Val Borbera (founder/genetic isolated) individuals	1,246 Erasmus Rucphen (founder/genetic isolated) individuals, 353 Silk Road individuals	6p21.32	HLA-DOA	rs9276975-T	0.15	8E-6		0.0419	[NR] unit increase	Illumina [6967159] (imputed)	N
617	chr6_dbb_hap3	4256281	4256282	rs378352	25802187	Jiang DK	2015-04-28	Hepatology	Genetic variants in five novel loci including CFB and CD40 predispose to chronic hepatitis B.	Chronic hepatitis B infection	2,514 Chinese ancestry cases, 1,130 Chinese ancestry controls	6,600 Chinese ancestry cases, 8,127 Chinese ancestry controls	6p21.32	HLA-DOA	rs378352-T	0.39	1E-23		1.26	[1.20-1.31]	Illumina [3680900] (imputed)	N
617	chr6_dbb_hap3	4256361	4256362	rs399604	22139419	Gieger C	2011-11-30	Nature	New gene functions in megakaryopoiesis and platelet formation.	Platelet count	38,891 European ancestry individuals, 1,661 Val Borbera (founder/genetic isolate) individuals, 521 Carlantino (founder/genetic isolate) individuals, 1,198 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,213 South Tyrolean (founder/genetic isolate) individuals, 890 Sorbian (founder/genetic isolate) individuals, 4,292 Sardinian (founder/genetic isolate) individuals	Up to 16,949 European ancestry individuals, 854 Cliento (founder/genetic isolate) individuals, 1,035 Talana (founder/genetic isolate) individuals	6p21.32	HLA-DOA	rs399604-C	NR	1E-10		2.346	[1.63-3.06] 10^9/l increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
617	chr6_dbb_hap3	4256858	4256859	rs2267647	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.32		rs2267647-A	0.331	4E-13				Affymetrix [10369434] (imputed)	N
617	chr6_dbb_hap3	4258767	4258768	rs381218	32534018	Liu X	2020-06-10	Brain Behav Immun	Genetic factors underlying the bidirectional relationship between autoimmune and mental disorders - findings from a Danish population-based study.	Autoimmune traits	1,383 Danish ancestry cases, 62,656 Danish ancestry controls	NA	6p21.32	NR	rs381218-T	0.29	1E-10		1.31	[1.21-1.42]	NR [7721839] (imputed)	N
617	chr6_dbb_hap3	4265094	4265095	rs11964504	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	6p21.32	NR	rs11964504-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
617	chr6_dbb_hap3	4270050	4270051	rs9296068	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	6p21.32	HLA-DOA	rs9296068-T	0.65	1E-8		1.05	[1.03-1.07]	Illumina [20370935] (imputed)	N
617	chr6_dbb_hap3	4270877	4270878	rs56042736	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	133,321 East Asian ancestry individuals	NA	6p21.32		rs56042736-G	0.049558	3E-17		0.0728205	[0.056-0.09] unit decrease	Illumina [13477433] (imputed)	N
617	chr6_dbb_hap3	4286800	4286801	rs150480104	32141793	Garman L	2020-03-06	Ocul Immunol Inflamm	Genome-Wide Association Study of Ocular Sarcoidosis Confirms HLA Associations and Implicates Barrier Function and Autoimmunity in African Americans.	Ocular sarcoidosis	260 African American cases, 1,551 African American controls	NA	6p21.32	NR	rs150480104-A	NR	8E-6		3.855	[2.13-6.98]	Illumina [13976150] (imputed)	N
617	chr6_dbb_hap3	4290689	4290690	rs78331658	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Measles	38,219 European ancestry cases, 47,279 European ancestry controls	NA	6p21.32	NR	rs78331658-?	NR	1E-7		1.7845	[1.12-2.45] unit increase	Illumina [at least 560000] (imputed)	N
617	chr6_dbb_hap3	4300294	4300295	rs9296069	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.32		rs9296069-C	0.749	5E-33				Affymetrix [10369434] (imputed)	N
617	chr6_dbb_hap3	4301689	4301690	rs3130582	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p21.32	HLA-DPA1	rs3130582-T	0.202102	3E-8	(-24 ms)	0.0369729	[0.023-0.051] unit increase	Affymetrix [10000000] (imputed)	N
617	chr6_dbb_hap3	4304487	4304488	rs9277176	29534301	Nishida N	2018-03-13	Hepatology	Key HLA-DRB1-DQB1 haplotypes and role of the BTNL2 gene for response to a hepatitis B vaccine.	Response to hepatitis B vaccine	107 Japanese ancestry low responder individuals, 351 Japanese ancestry intermediate responder individuals, 735 Japanese ancestry high responder individuals	NA	6p21.32	HLA-DPA1	rs9277176-?		1E-7		0.219	unit decrease	Affymetrix [427664]	N
617	chr6_dbb_hap3	4307291	4307292	rs6457709	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6p21.32		rs6457709-?	NR	2E-6		0.94528	[0.92-0.97]	NR [685523]	N
617	chr6_dbb_hap3	4307291	4307292	rs6457709	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Hepatitis B	1,425 European ancestry cases, 218,180 European ancestry controls	NA	6p21.32	NR	rs6457709-?	NR	8E-6		0.1819	[0.1-0.26] unit increase	Illumina [at least 560000] (imputed)	N
617	chr6_dbb_hap3	4307448	4307449	rs422544	32771030	Tangtanatakul P	2020-08-08	Arthritis Res Ther	Meta-analysis of genome-wide association study identifies FBN2 as a novel locus associated with systemic lupus erythematosus in Thai population.	Systemic lupus erythematosus	487 Thai cases, 1,606 Thai controls	405 Thai cases, 1,590 Thai controls	6p21.32	HLA-DOA, HLA-DPA1	rs422544-C	0.15	5E-8		0.6232	[NR]	Illumina [421909] (imputed)	N
617	chr6_dbb_hap3	4309976	4309977	rs9277332	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Keratinocyte cancer (MTAG)	at least 18,538 European ancestry cases, at least 340,302 European ancestry controls	NA	6p21.32	HLA-DPA1	rs9277332-G	0.744531	2E-9		1.06	[1.04-1.08]	Affymetrix [7600000] (imputed)	N
617	chr6_dbb_hap3	4310055	4310056	rs588997	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	6p21.32	NR	rs588997-A	NR	4E-6	(female)	0.1185	[0.068-0.169] unit decrease	Illumina [11133794] (imputed)	N
617	chr6_dbb_hap3	4310775	4310776	rs6457710	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	6p21.32	HLA-DPA1	rs6457710-G	0.268971	2E-11		0.017609773	[0.012-0.023] unit increase	Affymetrix [93095623] (imputed)	N
617	chr6_dbb_hap3	4312950	4312951	rs35449774	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.32	NR	rs35449774-?	NR	3E-11				Affymetrix [~ 8270000] (imputed)	N
617	chr6_dbb_hap3	4312950	4312951	rs35449774	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs35449774-?	NR	2E-16				Affymetrix [~ 8270000] (imputed)	N
617	chr6_dbb_hap3	4312950	4312951	rs35449774	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	6p21.32	HLA-DPA1, HLA-DPB1, HLA-DPB2	rs35449774-T	0.142188	7E-11		1.0714098	[1.05-1.09]	Affymetrix [8274727] (imputed)	N
617	chr6_dbb_hap3	4314203	4314204	rs1042901	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	6p21.32	HLA-DPA1	rs1042901-C	0.119144	1E-14		0.029356208	[0.022-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
617	chr6_dbb_hap3	4314360	4314361	rs3077	33736632	Zeng Z	2021-03-18	BMC Med Genomics	Genome-wide association study identifies new loci associated with risk of HBV infection and disease progression.	Persistent hepatitis B virus infection	587 Chinese ancestry persistent cases, 275 Chinese ancestry clearance controls	NA	6p21.32	HLA-DPA1	rs3077-A	0.4145	7E-9		0.5007	NR	Affymetrix [607153]	N
617	chr6_dbb_hap3	4314360	4314361	rs3077	25802187	Jiang DK	2015-04-28	Hepatology	Genetic variants in five novel loci including CFB and CD40 predispose to chronic hepatitis B.	Chronic hepatitis B infection	2,514 Chinese ancestry cases, 1,130 Chinese ancestry controls	6,600 Chinese ancestry cases, 8,127 Chinese ancestry controls	6p21.32	HLA-DPA1	rs3077-A	0.66	1E-53		1.45	[1.39-1.52]	Illumina [3680900] (imputed)	N
617	chr6_dbb_hap3	4314360	4314361	rs3077	23760081	Kim YJ	2013-06-10	Hum Mol Genet	A genome-wide association study identified new variants associated with the risk of chronic hepatitis B.	Chronic hepatitis B infection	400 Korean ancestry cases, 1,000 Korean ancestry controls	971 Korean ancestry cases, 1,938 Korean ancestry controls	6p21.32	HLA-DP	rs3077-?	NR	5E-39		1.89	[1.69-2.08]	Illumina [719265]	N
617	chr6_dbb_hap3	4314360	4314361	rs3077	22737229	Nishida N	2012-06-21	PLoS One	Genome-wide association study confirming association of HLA-DP with protection against chronic hepatitis B and viral clearance in Japanese and Korean.	Hepatitis B (viral clearance)	181 East Asian ancestry HBV carriers, 184 East Asian ancestry controls, 185 East Asian ancestry spontaneously HBV-resolved individuals	Up to 8,045 East Asian ancestry HBV carriers, up to 9,003 East Asian ancestry controls, up to 3,995 East Asian ancestry spontaneously HBV-resolved individuals	6p21.32	HLA-DPA1	rs3077-C	0.60	4E-45	(Protective effects against CHB)	1.82	[1.67-1.96]	Affymetrix [597789]	N
617	chr6_dbb_hap3	4314360	4314361	rs3077	22737229	Nishida N	2012-06-21	PLoS One	Genome-wide association study confirming association of HLA-DP with protection against chronic hepatitis B and viral clearance in Japanese and Korean.	Hepatitis B (viral clearance)	181 East Asian ancestry HBV carriers, 184 East Asian ancestry controls, 185 East Asian ancestry spontaneously HBV-resolved individuals	Up to 8,045 East Asian ancestry HBV carriers, up to 9,003 East Asian ancestry controls, up to 3,995 East Asian ancestry spontaneously HBV-resolved individuals	6p21.32	HLA-DPA1	rs3077-C	0.60	1E-9	(Clearance of HBV)	1.67	[1.43-2.0]	Affymetrix [597789]	N
617	chr6_dbb_hap3	4314360	4314361	rs3077	21750111	Mbarek H	2011-07-12	Hum Mol Genet	A genome-wide association study of chronic hepatitis B identified novel risk locus in a Japanese population.	Hepatitis B	458 Japanese ancestry cases, 2,056 Japanese ancestry controls	2,209 Japanese ancestry cases, 4,440 Japanese ancestry controls	6p21.32	HLA-DPA1	rs3077-G	0.60	2E-61		1.87	[1.73-2.01]	Illumina [423627]	N
617	chr6_dbb_hap3	4314758	4314759	rs79341334	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	6p21.32	NR	rs79341334-?	NR	4E-9	(MIC-A)	1.11932	[0.75-1.49] unit increase	Illumina [11901634] (imputed)	N
617	chr6_dbb_hap3	4315048	4315049	rs73739621	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (multivariate analysis)	477,968 European ancestry individuals	NA	6p21.32	HLA, DPA1	rs73739621-C	0.096	2E-10		0.05	[0.034-0.066] unit decrease	NR [NR] (imputed)	N
617	chr6_dbb_hap3	4315048	4315049	rs73739621	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (age of onset)	117,130 European ancestry individuals	NA	6p21.32	HLA-DPA1	rs73739621-C	0.096	4E-11		0.051	[0.035-0.067] unit decrease	NR [7647814] (imputed)	N
617	chr6_dbb_hap3	4315152	4315153	rs2301227	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	6p21.32	NR	rs2301227-A	NR	5E-6	(female)	0.1072	[0.061-0.153] unit decrease	Illumina [11133794] (imputed)	N
617	chr6_dbb_hap3	4315162	4315163	rs111789468	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	6p21.32	HLA-DPA1	rs111789468-?	NR	2E-13		1.092	[1.07-1.12]	Affymetrix [9000000] (imputed)	N
617	chr6_dbb_hap3	4315162	4315163	rs111789468	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	6p21.32	HLA-DPA1	rs111789468-T	NR	4E-6		1.082	[1.05-1.12]	Affymetrix [9000000] (imputed)	N
617	chr6_dbb_hap3	4315915	4315916	rs34596699	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	Systemic lupus erythematosus	1,639 East Asian ancestry cases, 2,410 East Asian ancestry controls	NA			rs34596699-T	NR	2E-8		0.2177	[0.14-0.29] unit increase	Illumina [NR] (imputed)	N
617	chr6_dbb_hap3	4316653	4316654	rs74292032	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6p21.32	HLA-DPA1	rs74292032-G	0.014974	1E-15		0.07435001	[0.056-0.093] unit decrease	Affymetrix [93095623] (imputed)	N
617	chr6_dbb_hap3	4320963	4320964	rs9277341	28029757	Merkel PA	2016-12-28	Arthritis Rheumatol	Identification of Functional and Expression Polymorphisms Associated With Risk for Antineutrophil Cytoplasmic Autoantibody-Associated Vasculitis.	Antineutrophil cytoplasmic antibody-associated vasculitis	1,015 European ancestry granulomatosis with polyangiitis cases, 206 European ancestry microscopic polyangiitis cases, 3,258 European ancestry controls.	541 European ancestry granulomatosis with polyangiitis cases, 30 European ancestry microscopic polyangiitis cases, 1,465 European ancestry controls.	6p21.32	HLA-DPA1	rs9277341-T	0.70	6E-71		2.44	2.21-2.69	Affymetrix [at least 333035] (imputed)	N
617	chr6_dbb_hap3	4321142	4321143	rs9277342	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	6p21.32	HLA-DPA1	rs9277342-T	0.21017	8E-10		0.017251292	[0.012-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
617	chr6_dbb_hap3	4321436	4321437	rs4345439	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Graves' disease	2,809 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	6p21.32		rs4345439-T	0.47048229	2E-67		0.48648387	[0.43-0.54] unit increase	Illumina [13429311] (imputed)	N
617	chr6_dbb_hap3	4322411	4322412	rs9357156	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Graves' disease	1,678 European ancestry cases, 456,942 European ancestry controls, 2,809 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	6p21.32		rs9357156-C	NR	1E-68		0.4396	[0.39-0.49] unit increase	Affymetrix, Illumina [25841587] (imputed)	N
617	chr6_dbb_hap3	4323072	4323073	rs2856830	30527956	Rhodes CJ	2018-12-05	Lancet Respir Med	Genetic determinants of risk in pulmonary arterial hypertension: international genome-wide association studies and meta-analysis.	Pulmonary arterial hypertension	2,085 European ancestry cases, 9,659 European ancestry controls	NA	6p21.32	HLA-DPA1, HLA-DPB1	rs2856830-C	0.12	8E-20		1.56	[1.42-1.71]	Illumina [~ 7727590] (imputed)	N
617	chr6_dbb_hap3	4324218	4324219	rs987870	21814517	Noguchi E	2011-07-21	PLoS Genet	Genome-wide association study identifies HLA-DP as a susceptibility gene for pediatric asthma in Asian populations.	Asthma	938 Japanese ancestry cases, 2,376 Japanese ancestry controls	1653 East Asian ancestry cases, 1453 East Asian ancestry controls	6p21.32	HLA, DPB1	rs987870-C	0.14	2E-10		1.4	[1.26-1.55]	Illumina [450326]	N
617	chr6_dbb_hap3	4324218	4324219	rs987870	21779181	Gorlova O	2011-07-14	PLoS Genet	Identification of novel genetic markers associated with clinical phenotypes of systemic sclerosis through a genome-wide association strategy.	Systemic sclerosis	2,296 European ancestry cases, 5,172 European ancestry controls	3,175 European ancestry cases, 4,210 European ancestry controls	6p21.32	HLA-DPA1, HLA-DPB1	rs987870-?	0.15	2E-20	(ATA positive)	2.09	[1.78-2.45]	Illumina [NR] (imputed)	N
617	chr6_dbb_hap3	4325353	4325354	rs115910061	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs115910061-T	0.059	5E-12		0.721	[0.63-0.81]	Illumina [11270530] (imputed)	N
618	chr6_dbb_hap3	4326325	4326326	rs6415133	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p21.32	NR	rs6415133-?	NR	6E-16		0.0994	[0.075-0.124] unit decrease	Illumina [at least 560000] (imputed)	N
618	chr6_dbb_hap3	4326593	4326594	rs2213309	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	6p21.32	NR	rs2213309-T	0.55	8E-7	(female)	0.1155	[0.07-0.161] unit increase	Illumina [11133794] (imputed)	N
618	chr6_dbb_hap3	4326838	4326839	rs2856816	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.32		rs2856816-T	0.908	5E-23				Affymetrix [10369434] (imputed)	N
618	chr6_dbb_hap3	4326838	4326839	rs2856816	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	6p21.32	HLA-DPB1, HLA-DPA1	rs2856816-C	0.092	2E-17		0.0523189	[0.04-0.064] unit decrease	Affymetrix [~ 2500000] (imputed)	N
618	chr6_dbb_hap3	4326838	4326839	rs2856816	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	6p21.32	HLA-DPB1, HLA-DPA1	rs2856816-C	0.092	7E-15		0.04810228	[0.036-0.06] unit decrease	Affymetrix [~ 2500000] (imputed)	N
618	chr6_dbb_hap3	4327036	4327037	rs7750458	27153935	Zhang CE	2016-05-06	J Dermatol	Variation at HLA-DPB1 is associated with dermatomyositis in Chinese population.	Dermatomyositis	127 Han Chinese ancestry case, 1,566 Han Chinese ancestry controls	NA	6p21.32	HLA-DPB1, HLA-DMB	rs7750458-A	0.09	1E-9		2.5	[1.80-3.44]	Illumina [812602]	N
618	chr6_dbb_hap3	4327037	4327038	rs56934772	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	6p21.32	HLA-DPB1	rs56934772-T	NR	5E-8		0.259632	[0.17-0.35] unit increase	Illumina [at least 950000] (imputed)	N
618	chr6_dbb_hap3	4327304	4327305	rs3135022	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	6p21.32	NR	rs3135022-A	NR	3E-6	(female)	0.1098	[0.064-0.156] unit decrease	Illumina [11133794] (imputed)	N
618	chr6_dbb_hap3	4328064	4328065	rs2021408	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.32		rs2021408-T	0.833	1E-17				Affymetrix [10369434] (imputed)	N
618	chr6_dbb_hap3	4328064	4328065	rs2021408	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.32		rs2021408-C	0.840557	3E-7		1.0296161	[1.02-1.04]	Affymetrix, Illumina [9851866] (imputed)	N
618	chr6_dbb_hap3	4328080	4328081	rs2856821	34450027	Boer CG	2021-08-24	Cell	Deciphering osteoarthritis genetics across 826,690 individuals from 9 populations.	Osteoarthritis of the hip or knee	88,842 European ancestry cases, 397,208 European ancestry controls, 899 Japanese ancestry cases, 3,396 Japanese ancestry controls	NA	6p21.32		rs2856821-T	0.7896	6E-9		1.0471791	[1.031089783-1.063519526]	Affymetrix, Illumina [NR] (imputed)	N
618	chr6_dbb_hap3	4328080	4328081	rs2856821	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Osteoarthritis	77,052 European ancestry cases, 378,169 European ancestry controls	NA	6p21.32	NR	rs2856821-T	0.79	1E-9		1.04	[1.03-1.06]	Affymetrix, Illumina [up to 17000000] (imputed)	N
618	chr6_dbb_hap3	4328090	4328091	rs3097670	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	6p21.32	HLA-DPA1	rs3097670-G	0.88	8E-12		1.064	[1.05-1.08]	Affymetrix, Illumina [8307659] (imputed)	N
618	chr6_dbb_hap3	4328369	4328370	rs1431403	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs1431403-T	0.39	1E-22		0.848	[0.81-0.88]	Illumina [11270530] (imputed)	N
618	chr6_dbb_hap3	4328804	4328805	rs3135024	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Aspartate aminotransferase levels	386,570 British ancestry individuals, 10,617 Asian or Asian British individuals, 7,426 Black or Black British individuals, 2,321 Chinese ancestry individuals	NA	6p21.32	HLA-DPB1	rs3135024-?	NR	8E-24		0.0034	[0.0028-0.004] unit increase	Affymetrix [21347608] (imputed)	N
618	chr6_dbb_hap3	4328804	4328805	rs3135024	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Alanine aminotransferase levels	387,859 British ancestry individuals, 10,635 Asian or Asian British individuals, 7,468 Black or Black British individuals, 2,338 Chinese ancestry individuals	NA	6p21.32	HLA-DPB1	rs3135024-?	NR	3E-10		0.0034	[0.0024-0.0044] unit increase	Affymetrix [21347608] (imputed)	N
618	chr6_dbb_hap3	4328804	4328805	rs3135024	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DPA1, HLA-DPB1, RPL32P1	rs3135024-C	NR	2E-8		0.0184048	[0.012-0.025] unit decrease	Affymetrix [321016] (imputed)	N
618	chr6_dbb_hap3	4328950	4328951	rs3097671	34197731	Li Q	2021-06-23	Am J Hum Genet	Whole-exome sequencing reveals common and rare variants in immunologic and neurological genes implicated in achalasia.	Idiopathic achalasia	280 Chinese Han ancestry cases, 1,121 Chinese Han ancestry controls	NA	6p21.32		rs3097671-C	0.102	3E-7		2.29	[1.67-3.15]	Illumina [476650] (imputed)	N
618	chr6_dbb_hap3	4329440	4329441	rs3130169	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs3130169-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
618	chr6_dbb_hap3	4329798	4329799	rs12722013	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	HLA-DPB1	rs12722013-C	0.049	1E-15	(C-C motif chemokine 21, CCL21.2516.57.3)	0.45	[0.33-0.57] unit increase	Affymetrix [10572788] (imputed)	N
618	chr6_dbb_hap3	4329804	4329805	rs1126511	34197731	Li Q	2021-06-23	Am J Hum Genet	Whole-exome sequencing reveals common and rare variants in immunologic and neurological genes implicated in achalasia.	Idiopathic achalasia	100 Chinese Han ancestry cases, 313 Chinese Han ancestry controls	230 Chinese Han ancestry cases, 1,760 Chinese Han ancestry controls	6p21.32		rs1126511-T	0.181	2E-9		1.83		Illumina [192329]	N
618	chr6_dbb_hap3	4329876	4329877	rs9277348	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hypothyroidism	1,114 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	6p21.32		rs9277348-C	0.428105722	8E-16		0.3692923	[0.28-0.46] unit increase	Illumina [13429045] (imputed)	N
618	chr6_dbb_hap3	4329944	4329945	rs1042133	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	6p21.32	HLA-DPB1	rs1042133-C	0.15836	8E-32		0.036145743	[0.03-0.042] unit increase	Affymetrix [93095623] (imputed)	N
618	chr6_dbb_hap3	4329944	4329945	rs1042133	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	6p21.32	HLA-DPB1	rs1042133-C	0.1567	3E-12		0.03465061	[0.025-0.044] unit increase	Affymetrix [~ 2500000] (imputed)	N
618	chr6_dbb_hap3	4329999	4330000	rs1042151	32004448	Savage SA	2020-01-30	Am J Hum Genet	Genome-wide Association Study Identifies HLA-DPB1 as a Significant Risk Factor for Severe Aplastic Anemia.	Severe aplastic anemia	359 European ancestry cases, 1,396 European ancestry controls	175 European ancestry cases, 1,059 European ancestry controls	6p21.32	HLA-DPB1	rs1042151-?	NR	2E-13		1.75	[1.50-2.03]	Illumina [688067]	N
618	chr6_dbb_hap3	4329999	4330000	rs1042151	23180272	Park BL	2012-11-21	Hum Genet	Genome-wide association study of aspirin-exacerbated respiratory disease in a Korean population.	Aspirin exacerbated respiratory disease in asthmatics	117 Korean ancestry cases, 685 Korean ancestry controls	142 Korean ancestry cases, 996 Korean ancestry controls	6p21.32	HLA-DPB1	rs1042151-G	0.083	5E-7		2.4	[1.68-3.42]	Illumina [430486]	N
618	chr6_dbb_hap3	4330027	4330027	rs141530233	28029757	Merkel PA	2016-12-28	Arthritis Rheumatol	Identification of Functional and Expression Polymorphisms Associated With Risk for Antineutrophil Cytoplasmic Autoantibody-Associated Vasculitis.	Antineutrophil cytoplasmic antibody-associated vasculitis	1,015 European ancestry granulomatosis with polyangiitis cases, 206 European ancestry microscopic polyangiitis cases, 3,258 European ancestry controls.	541 European ancestry granulomatosis with polyangiitis cases, 30 European ancestry microscopic polyangiitis cases, 1,465 European ancestry controls.	6p21.32	HLA-DPB1	rs141530233-?	0.7	1E-89		2.99	[2.69-3.33]	Affymetrix [at least 333035] (imputed)	N
618	chr6_dbb_hap3	4330032	4330033	rs9277356	31243853	Chung S	2019-06-27	J Viral Hepat	GWAS identifying HLA-DPB1 gene variants associated with responsiveness to hepatitis B virus vaccination in Koreans: Independent association of HLA-DPB1*04:02 possessing rs1042169 G - rs9277355 C - rs9277356 A.	Response to hepatitis B vaccine	1,760 Korean ancestry non-responder adults, 5,107 Korean ancestry responder adults	2,327 Korean ancestry adults, 49 Korean ancestry non-responder infants, 234 Korean ancestry responder infants	6p21.32	HLA-DPB1	rs9277356-A	0.4716	7E-31	(Adults)	1.474164	[1.38-1.574]	Affymetrix [345072]	N
618	chr6_dbb_hap3	4330259	4330260	rs7770370	32573827	Huang YH	2020-06-23	Aliment Pharmacol Ther	Large-scale genome-wide association study identifies HLA class II variants associated with chronic HBV infection: a study from Taiwan Biobank.	Chronic hepatitis B infection	1,810 East Asian cases, 9,002 East Asian seropositive controls	648 East Asian cases, 3,190 East Asian seropositive controls	6p21.32	NR	rs7770370-G	0.5739	3E-35		1.6393442	[1.52-1.79]	Affymetrix [583383]	N
618	chr6_dbb_hap3	4330612	4330613	rs2856827	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip	15 Asian ancestry cases, 13 European ancestry cases, 15 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	6p21.32	NR	rs2856827-?	NR	4E-6		3.87	[2.88-5.2]	Illumina [539000] (imputed)	N
618	chr6_dbb_hap3	4331001	4331002	rs9501251	28425483	Qiu F	2017-04-20	Nat Commun	A genome-wide association study identifies six novel risk loci for primary biliary cholangitis.	Primary biliary cholangitis	1,122 Han Chinese ancestry cases, 4,036 Han Chinese ancestry controls	907 Han Chinese ancestry cases, 2,127 Han Chinese ancestry controls	6p21.32	HLA-DPB1	rs9501251-G	0.044	2E-22		2.01	[1.76-2.32]	Illumina [776516]	N
618	chr6_dbb_hap3	4331064	4331065	rs7772134	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.32		rs7772134-G	0.899	5E-45				Affymetrix [10369434] (imputed)	N
618	chr6_dbb_hap3	4331617	4331618	rs9277378	27595289	Goyal RK	2016-09-05	Bone Marrow Transplant	Novel HLA-DP region susceptibility loci associated with severe acute GvHD.	Acute graft versus host disease in bone marrow transplantation (recipient effect)	291 European ancestry recipients with acute graft versus host disease, 288 European ancestry recipients without acute graft versus host disease	NA	6p21.32	HLA-DPB1	rs9277378-?		2E-9				Affymetrix [905761]	N
618	chr6_dbb_hap3	4331617	4331618	rs9277378	27470079	Li Z	2016-07-25	Lancet Oncol	Genetic risk of extranodal natural killer T-cell lymphoma: a genome-wide association study.	Extranodal natural killer T-cell lymphoma (nasal type)	189 East Asian ancestry cases, 957 East Asian ancestry controls	514 East Asian ancestry cases, 5,822 East Asian ancestry controls	6p21.32	HLA-DPB1	rs9277378-A	0.29	4E-19		1.84	[1.61-2.11]	Illumina [477644] (imputed)	N
618	chr6_dbb_hap3	4333235	4333235	rs142975055	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic hepatitis B infection	145 European ancestry cases, 351,740 European ancestry controls, 2,234 East Asian ancestry cases, 169,588 East Asian ancestry controls	NA	6p21.32		rs142975055-GAAATA	NR	1E-44		0.4385	[0.38-0.5] unit increase	Affymetrix, Illumina [20457334] (imputed)	N
618	chr6_dbb_hap3	4334682	4334683	rs9277464	29534301	Nishida N	2018-03-13	Hepatology	Key HLA-DRB1-DQB1 haplotypes and role of the BTNL2 gene for response to a hepatitis B vaccine.	Response to hepatitis B vaccine	107 Japanese ancestry low responder individuals, 351 Japanese ancestry intermediate responder individuals, 735 Japanese ancestry high responder individuals	NA	6p21.32	HLA-DPB1	rs9277464-?		7E-11		0.175	unit decrease	Affymetrix [427664]	N
618	chr6_dbb_hap3	4336191	4336192	rs9277535	27244555	Li Y	2016-05-31	Nat Commun	Genome-wide association study identifies 8p21.3 associated with persistent hepatitis B virus infection among Chinese.	Persistent hepatitis B virus infection	1,251 Chinese ancestry persistently infected cases, 1,057 Chinese ancestry spontaneously recovered controls	3,905 Chinese ancestry persistently infected cases, 3,356 Chinese ancestry spontaneously recovered controls	6p21.32	HLA-DPB1	rs9277535-A		4E-6		1.45	[1.23-1.69]	Affymetrix, Illumina [up to 4494311] (imputed)	N
618	chr6_dbb_hap3	4336191	4336192	rs9277535	25802187	Jiang DK	2015-04-28	Hepatology	Genetic variants in five novel loci including CFB and CD40 predispose to chronic hepatitis B.	Chronic hepatitis B infection	2,514 Chinese ancestry cases, 1,130 Chinese ancestry controls	6,600 Chinese ancestry cases, 8,127 Chinese ancestry controls	6p21.32	HLA-DPB1	rs9277535-A	0.58	1E-70		1.52	[1.45-1.59]	Illumina [3680900] (imputed)	N
618	chr6_dbb_hap3	4336191	4336192	rs9277535	24940741	Chang SW	2014-06-18	PLoS One	A genome-wide association study on chronic HBV infection and its clinical progression in male Han-Taiwanese.	Chronic hepatitis B infection	321 Chinese ancestry cases, 304 Chinese ancestry controls	1,302 Chinese ancestry cases, 761 Chinese ancestry controls	6p21.32	HLA-DPB1	rs9277535-G	0.251	5E-14		1.59	[1.41-1.79]	Illumina [456262]	N
618	chr6_dbb_hap3	4336191	4336192	rs9277535	23760081	Kim YJ	2013-06-10	Hum Mol Genet	A genome-wide association study identified new variants associated with the risk of chronic hepatitis B.	Chronic hepatitis B infection	400 Korean ancestry cases, 1,000 Korean ancestry controls	971 Korean ancestry cases, 1,938 Korean ancestry controls	6p21.32	HLA-DP	rs9277535-?	NR	4E-40		1.89	[1.72-2.08]	Illumina [719265]	N
618	chr6_dbb_hap3	4336191	4336192	rs9277535	22737229	Nishida N	2012-06-21	PLoS One	Genome-wide association study confirming association of HLA-DP with protection against chronic hepatitis B and viral clearance in Japanese and Korean.	Hepatitis B (viral clearance)	181 East Asian ancestry HBV carriers, 184 East Asian ancestry controls, 185 East Asian ancestry spontaneously HBV-resolved individuals	Up to 8,045 East Asian ancestry HBV carriers, up to 9,003 East Asian ancestry controls, up to 3,995 East Asian ancestry spontaneously HBV-resolved individuals	6p21.32	HLA-DPB1	rs9277535-G	0.57	2E-21	(Protective effects against CHB)	1.64	[1.47-1.82]	Affymetrix [597789]	N
618	chr6_dbb_hap3	4336191	4336192	rs9277535	22737229	Nishida N	2012-06-21	PLoS One	Genome-wide association study confirming association of HLA-DP with protection against chronic hepatitis B and viral clearance in Japanese and Korean.	Hepatitis B (viral clearance)	181 East Asian ancestry HBV carriers, 184 East Asian ancestry controls, 185 East Asian ancestry spontaneously HBV-resolved individuals	Up to 8,045 East Asian ancestry HBV carriers, up to 9,003 East Asian ancestry controls, up to 3,995 East Asian ancestry spontaneously HBV-resolved individuals	6p21.32	HLA-DPB1	rs9277535-G	0.57	2E-17	(Clearance of HBV)	1.52	[1.37-1.67]	Affymetrix [597789]	N
618	chr6_dbb_hap3	4336191	4336192	rs9277535	21764829	Png E	2011-07-15	Hum Mol Genet	A genome-wide association study of hepatitis B vaccine response in an Indonesian population reveals multiple independent risk variants in the HLA region.	Hepatitis B vaccine response	1,683 Indonesian ancestry individuals	1,931 Indonesian ancestry individuals	6p21.32	HLA-DPB1	rs9277535-?	NR	3E-12		1.39	[1.23-1.59]	Illumina [455508]	N
618	chr6_dbb_hap3	4336191	4336192	rs9277535	21750111	Mbarek H	2011-07-12	Hum Mol Genet	A genome-wide association study of chronic hepatitis B identified novel risk locus in a Japanese population.	Hepatitis B	458 Japanese ancestry cases, 2,056 Japanese ancestry controls	2,209 Japanese ancestry cases, 4,440 Japanese ancestry controls	6p21.32	HLA-DPB1	rs9277535-G	0.57	3E-54		1.77	[1.65-1.91]	Illumina [423627]	N
618	chr6_dbb_hap3	4336191	4336192	rs9277535	19349983	Kamatani Y	2009-04-06	Nat Genet	A genome-wide association study identifies variants in the HLA-DP locus associated with chronic hepatitis B in Asians.	Hepatitis B	179 Japanese ancestry cases, 934 Japanese ancestry controls	1,599 Japanese ancestry cases, 2,821 Japanese ancestry controls, 308 Thai ancestry cases, 546 Thai ancestry controls	6p21.32	HLA-DPB1	rs9277535-G		6E-39		1.75	[1.61-1.92]	Illumina [499544]	N
618	chr6_dbb_hap3	4336428	4336429	rs9501255	28077804	Ben-Avraham D	2017-01-10	Aging (Albany NY)	The complex genetics of gait speed: genome-wide meta-analysis approach.	Gait speed in old age	31,478 European ancestry older adults	2,588 European ancestry older adults	6p21.32	HLA-DPB1	rs9501255-T	NR	3E-7		0.0244	[0.015-0.034] m/sec increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
618	chr6_dbb_hap3	4336577	4336578	rs9277542	33736632	Zeng Z	2021-03-18	BMC Med Genomics	Genome-wide association study identifies new loci associated with risk of HBV infection and disease progression.	Persistent hepatitis B virus infection	587 Chinese ancestry persistent cases, 275 Chinese ancestry clearance controls	NA	6p21.32	HLA-DPB1	rs9277542-T	0.5347	2E-8		0.5353	NR	Affymetrix [607153]	N
618	chr6_dbb_hap3	4336577	4336578	rs9277542	33736632	Zeng Z	2021-03-18	BMC Med Genomics	Genome-wide association study identifies new loci associated with risk of HBV infection and disease progression.	Hepatitis B	460 Chinese ancestry cases, 169 Chinese ancestry controls	NA	6p21.32	HLA-DPB1	rs9277542-?	NR	2E-9				Affymetrix [607153]	N
618	chr6_dbb_hap3	4336749	4336750	rs9277549	29534301	Nishida N	2018-03-13	Hepatology	Key HLA-DRB1-DQB1 haplotypes and role of the BTNL2 gene for response to a hepatitis B vaccine.	Response to hepatitis B vaccine	107 Japanese ancestry low responder individuals, 351 Japanese ancestry intermediate responder individuals, 735 Japanese ancestry high responder individuals	NA	6p21.32	HLA-DPB2	rs9277549-?		6E-11		0.175	unit decrease	Affymetrix [427664]	N
618	chr6_dbb_hap3	4336831	4336832	rs9277552	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Osteoarthritis of the hip or knee	39,427 European ancestry cases, 378,169 European ancestry controls	NA	6p21.32	NR	rs9277552-C	0.79	2E-10		1.06	[1.04-1.08]	Affymetrix, Illumina [up to 17000000] (imputed)	N
618	chr6_dbb_hap3	4336831	4336832	rs9277552	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Knee osteoarthritis	24,955 European ancestry cases, 378,169 European ancestry controls	NA	6p21.32	NR	rs9277552-C	0.79	2E-8		1.07	[1.04-1.09]	Affymetrix, Illumina [up to 17000000] (imputed)	N
618	chr6_dbb_hap3	4336868	4336869	rs9277554	28076899	Taylor KE	2017-01-11	Arthritis Rheumatol	Genome-Wide Association Analysis Reveals Genetic Heterogeneity of Sjogren's Syndrome According to Ancestry.	Sjogren's syndrome	460 Asian ancestry cases, 1125 Asian ancestry controls	NA	6p21.32	HLA-DPB1	rs9277554-?		3E-7		1.65	[1.37-2.00]	Illumina [302688]	N
618	chr6_dbb_hap3	4336868	4336869	rs9277554	23740775	Xie G	2013-09-01	Arthritis Rheum	Association of granulomatosis with polyangiitis (Wegener's) with HLA-DPB1*04 and SEMA6A gene variants: evidence from genome-wide analysis.	Wegener's granulomatosis	459 European ancestry cases, 1,503 European ancestry controls	291 European ancestry cases, 317 European ancestry controls	6p21.32	HLA-DOA, HSD17B8, RING1, COL11A2, RXRB, HLA-DPB1*04, HLA-DPB1, HLA-DPB2	rs9277554-C	0.708	2E-50		4.17	[3.33-5.00]	Illumina [287802]	N
618	chr6_dbb_hap3	4336935	4336936	rs9277555	24586183	Medici M	2014-02-27	PLoS Genet	Identification of novel genetic Loci associated with thyroid peroxidase antibodies and clinical thyroid disease.	Thyroid peroxidase antibody levels	12,353 European ancestry individuals	8,159 European ancestry individuals	6p21.32	NR	rs9277555-G		6E-7		0.0199	[0.010-0.030] unit increase	Affymetrix, Illumina [up to 3437411] (imputed)	N
618	chr6_dbb_hap3	4336995	4336998	rs148969528	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p21.32	HLA-DPB1, HLA-DPA2	rs148969528-A	0.178395	3E-15		0.022868847	[0.017-0.029] unit increase	Affymetrix [93095623] (imputed)	N
618	chr6_dbb_hap3	4336995	4336998	rs148969528	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	6p21.32	HLA-DPB1, HLA-DPA2	rs148969528-A	0.178377	1E-17		0.024778191	[0.019-0.03] unit increase	Affymetrix [93095623] (imputed)	N
618	chr6_dbb_hap3	4337427	4337428	rs3128967	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6p21.32	NR	rs3128967-T	0.90959	2E-12		1.0504202	[1.04-1.06]	Affymetrix [15688218] (imputed)	N
618	chr6_dbb_hap3	4338092	4338093	rs9277562	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic hepatitis B infection	2,234 East Asian ancestry cases, 169,588 East Asian ancestry controls	NA	6p21.32		rs9277562-T	0.575524651	5E-45		0.44033504	[0.38-0.5] unit increase	Illumina [13428705] (imputed)	N
618	chr6_dbb_hap3	4340204	4340205	rs2179920	27501781	Shiraishi K	2016-08-09	Nat Commun	Association of variations in HLA class II and other loci with susceptibility to EGFR-mutated lung adenocarcinoma.	EGFR mutation-positive lung adenocarcinoma	663 Japanese ancestry cases, 4,367 Japanese ancestry controls	2,510 Japanese ancestry cases, 10,791 Japanese ancestry controls	6p21.32	HLA-DPB1	rs2179920-A	0.165	5E-17		1.36	[1.27-1.47]	Illumina [NR] (imputed)	N
618	chr6_dbb_hap3	4341448	4341449	rs2281388	31050781	Zhao SX	2019-05-03	JAMA Netw Open	Assessment of Molecular Subtypes in Thyrotoxic Periodic Paralysis and Graves Disease Among Chinese Han Adults: A Population-Based Genome-Wide Association Study.	Thyrotoxic hypokalemic periodic paralysis and Graves disease	171 Han Chinese ancestry cases, 2,160 Han Chinese ancestry controls	362 Han Chinese ancestry cases, 1,089 Han Chinese ancestry controls	6p21.32	HLA-DPB1, COL11A2	rs2281388-?	0.33	2E-18		1.74	[1.54-1.98]	Illumina [2752055] (imputed)	N
618	chr6_dbb_hap3	4341448	4341449	rs2281388	21841780	Chu X	2011-08-14	Nat Genet	A genome-wide association study identifies two new risk loci for Graves' disease.	Graves' disease	1,468 Chinese ancestry cases, 1,490 Chinese ancestry controls	3,994 Chinese ancestry cases, 3,510 Chinese ancestry controls	6p21.32	HLA, DPB1	rs2281388-T	0.32	2E-65		1.64	[1.55-1.74]	Illumina [486049]	N
618	chr6_dbb_hap3	4342152	4342153	rs6928954	20639394	Kang TW	2010-07-16	Hum Mol Genet	Genome-wide association of serum bilirubin levels in Korean population.	Bilirubin levels	8,841 Korean ancestry individuals	1,096 Korean ancestry individuals	6p21.32	intergenic	rs6928954-?	0.023	1E-6		0.075	[NR] bilirubin level increase	Affymetrix [1227049] (imputed)	N
618	chr6_dbb_hap3	4342200	4342201	rs2295119	32912934	Li M	2020-09-10	J Am Soc Nephrol	Genome-Wide Meta-Analysis Identifies Three Novel Susceptibility Loci and Reveals Ethnic Heterogeneity of Genetic Susceptibility for IgA Nephropathy.	IgA nephropathy	2,628 Chinese ancestry cases, 11,563 Chinese ancestry controls	6,879 Han Chinese ancestry cases, 9,019 Han Chinese ancestry controls, 1,039 Italian ancestry cases, 1,289 Italian ancestry controls	6p21.32	DPA1.DPB2	rs2295119-T	0.22960427086396265	3E-14	(East Asian)	1.3605813	[1.25664462393162-1.47311444258073]	NR [3611808] (imputed)	N
618	chr6_dbb_hap3	4342200	4342201	rs2295119	29784950	Sawai H	2018-05-21	Sci Rep	Genome-wide association study identified new susceptible genetic variants in HLA class I region for hepatitis B virus-related hepatocellular carcinoma.	Hepatocellular carcinoma in hepatitis B infection	473 Japanese ancestry chronic hepatitis and hepatocellular carcinoma cases, 516 Japanese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma	153 Japanese ancestry chronic hepatitis and hepatocellular carcinoma cases, 614 Japanese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma, 94 Chinese ancestry chronic hepatitis and hepatocellular carcinoma cases, 187 Chinese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma, 185 Thai ancestry chronic hepatitis and hepatocellular carcinoma cases, 198 Thai ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma	6p21.32	HLA	rs2295119-?	NR	6E-7	(Japanese)	1.59	[1.32-1.89]	Affymetrix [447830]	N
618	chr6_dbb_hap3	4342200	4342201	rs2295119	29784950	Sawai H	2018-05-21	Sci Rep	Genome-wide association study identified new susceptible genetic variants in HLA class I region for hepatitis B virus-related hepatocellular carcinoma.	Hepatocellular carcinoma in hepatitis B infection	473 Japanese ancestry chronic hepatitis and hepatocellular carcinoma cases, 516 Japanese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma	153 Japanese ancestry chronic hepatitis and hepatocellular carcinoma cases, 614 Japanese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma, 94 Chinese ancestry chronic hepatitis and hepatocellular carcinoma cases, 187 Chinese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma, 185 Thai ancestry chronic hepatitis and hepatocellular carcinoma cases, 198 Thai ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma	6p21.32	HLA	rs2295119-?	NR	5E-7		1.5873016	[1.32-1.89] Japanese	Affymetrix [447830]	N
618	chr6_dbb_hap3	4342559	4342560	rs3130189	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.32		rs3130189-T	0.829	9E-13				Affymetrix [10369434] (imputed)	N
618	chr6_dbb_hap3	4350897	4350898	rs3117245	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs3117245-C	NR	8E-9		1.174	[1.112-1.24]	Affymetrix [7846216] (imputed)	N
618	chr6_dbb_hap3	4351223	4351224	rs3117242	22808956	Lyons PA	2012-07-19	N Engl J Med	Genetically distinct subsets within ANCA-associated vasculitis.	Antineutrophil cytoplasmic antibody-associated vasculitis	914 European ancestry cases, 5,259 European ancestry controls	1,454 European ancestry cases, 1,666 European ancestry controls	6p21.32	HLA-DP, COL11A2	rs3117242-?	NR	1E-71		3.67	[NR]	Affymetrix [NR]	N
618	chr6_dbb_hap3	4352626	4352627	rs3128923	33736632	Zeng Z	2021-03-18	BMC Med Genomics	Genome-wide association study identifies new loci associated with risk of HBV infection and disease progression.	Hepatitis B	460 Chinese ancestry cases, 169 Chinese ancestry controls	NA	6p21.32	HLA-DPA2	rs3128923-?	NR	2E-6				Affymetrix [607153]	N
618	chr6_dbb_hap3	4353476	4353477	rs4282438	24097066	Li Y	2013-10-06	Nat Genet	A genome-wide association study in Han Chinese identifies a susceptibility locus for primary Sjogren's syndrome at 7q11.23.	Sjogren's syndrome	542 Han Chinese ancestry cases, 1,050 Han Chinese ancestry controls	1,303 Han Chinese ancestry cases, 2,727 Han Chinese ancestry controls	6p21.32	COL11A2, HLA-DPB1, HLA-DPA1	rs4282438-G	0.3546	9E-25		1.58	[1.45-1.72]	Affymetrix [556134]	N
618	chr6_dbb_hap3	4353476	4353477	rs4282438	23817570	Shi Y	2013-06-30	Nat Genet	A genome-wide association study identifies two new cervical cancer susceptibility loci at 4q12 and 17q12.	Cervical cancer	Up to 1,364 Han Chinese ancestry cases, up to 3,028 Han Chinese ancestry controls	4,167 Han Chinese ancestry cases, 7,196 Han Chinese ancestry controls	6p21.32	HLA-DPB2	rs4282438-?	0.56	5E-27	(Stringently Matched)	1.35	[1.27-1.41]	Affymetrix [563339]	N
618	chr6_dbb_hap3	4353544	4353545	rs2064479	31044621	Rimpela JM	2019-05-02	Blood Press	Genome-wide association study of white-coat effect in hypertensive patients.	White coat effect (clinic diastolic blood pressure minus ambulatory diastolic blood pressure)	206 Finnish ancestry individuals	NA	6p21.32	HLA-DPB1	rs2064479-A	0.26	5E-6		2.4	[1.42-3.38] unit increase	Illumina [629414]	N
618	chr6_dbb_hap3	4378012	4378013	rs117232140	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	6p21.32	HLA-DPB2	rs117232140-?	NR	7E-9		0.096564196	[0.064-0.129] unit decrease	Illumina [27896057] (imputed)	N
618	chr6_dbb_hap3	4378013	4378014	rs3117006	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma and attention deficit hyperactivity disorder	46,802 European ancestry asthma cases, 19,099 European ancestry attention deficit hyperactivity disorder cases, 381,675 European ancestry controls	NA	6p21.32	HLA-DPB2	rs3117006-?	NR	3E-8				Affymetrix [up to 8274727] (imputed)	N
618	chr6_dbb_hap3	4378013	4378014	rs3117006	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma (childhood onset)	9,676 European ancestry cases, 347,481 European ancestry controls	NA	6p21.32	HLA-DPB2	rs3117006-?	NR	2E-6		0.0766984	[0.044-0.109] unit increase	Affymetrix [8274727] (imputed)	N
618	chr6_dbb_hap3	4378728	4378729	rs3129270	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs3129270-T	NR	1E-7		1.1494253	[1.09-1.21]	Affymetrix [7846216] (imputed)	N
618	chr6_dbb_hap3	4378919	4378920	rs3129269	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	6p21.32	HLA-DPB2, HLA-DPB1, HLA-DPA1	rs3129269-C	NR	5E-7	(East Asian)	1.29	[NR]	Illumina [> 1000000] (imputed)	N
618	chr6_dbb_hap3	4379356	4379357	rs3116995	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.32	NR	rs3116995-?	NR	6E-9				Affymetrix [~ 8270000] (imputed)	N
618	chr6_dbb_hap3	4379649	4379650	rs6901830	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	6p21.32	HCG24	rs6901830-G	0.847121	1E-19		1.0788485	[1.0613158162383-1.09667081279089]	NR [9572556] (imputed)	N
618	chr6_dbb_hap3	4379874	4379875	rs9277768	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hashimoto thyroiditis	537 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	6p21.32		rs9277768-T	0.335380575	4E-10		0.4089919	[0.28-0.54] unit increase	Illumina [13428945] (imputed)	N
618	chr6_dbb_hap3	4379901	4379902	rs9277769	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.32		rs9277769-C	0.368	4E-12				Affymetrix [10369434] (imputed)	N
618	chr6_dbb_hap3	4380102	4380103	rs3116994	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.32		rs3116994-G	0.461	2E-9				Affymetrix [10369434] (imputed)	N
618	chr6_dbb_hap3	4380102	4380103	rs3116994	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs3116994-A	0.548	6E-12	(Collagen alpha-2(XI) chain, COL11A2.11278.4.3)	0.17	[0.13-0.21] unit increase	Affymetrix [10572788] (imputed)	N
618	chr6_dbb_hap3	4380843	4380844	rs3116989	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma onset (childhood vs adult)	13,962 European ancestry childhood onset cases, 14,873 European ancestry adult onset cases	31,002 European ancestry childhood onset cases, 16,297 European ancestry adult onset cases	6p21.32	COL11A2, HLA-DPB2	rs3116989-G	0.867	4E-6		1.073	[1.04-1.1]	Affymetrix [9000000] (imputed)	N
618	chr6_dbb_hap3	4380843	4380844	rs3116989	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	6p21.32	HLA-DPB2, COL11A2	rs3116989-?	NR	3E-17		1.096	[1.07-1.12]	Affymetrix [9000000] (imputed)	N
618	chr6_dbb_hap3	4380843	4380844	rs3116989	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	6p21.32	HLA-DPB2, COL11A2	rs3116989-G	NR	4E-14		1.078	[1.06-1.1]	Affymetrix [9000000] (imputed)	N
618	chr6_dbb_hap3	4385480	4385481	rs9366816	24940741	Chang SW	2014-06-18	PLoS One	A genome-wide association study on chronic HBV infection and its clinical progression in male Han-Taiwanese.	Chronic hepatitis B infection	321 Chinese ancestry cases, 304 Chinese ancestry controls	1,302 Chinese ancestry cases, 761 Chinese ancestry controls		HLA-DPA3	rs9366816-C	0.414	3E-10		1.43	[1.28-1.60]	Illumina [456262]	N
618	chr6_dbb_hap3	4385977	4385978	rs9277841	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6p21.32	HLA-DPA3	rs9277841-A	0.43233	1E-12		0.015864564	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
618	chr6_dbb_hap3	4406235	4406236	rs9277914	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	COL11A2	rs9277914-A	NR	8E-9		0.0222494	[0.015-0.03] unit increase	Affymetrix [321016] (imputed)	N
618	chr6_dbb_hap3	4406278	4406279	rs3130160	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.32	NR	rs3130160-?	NR	9E-11				Affymetrix [~ 8270000] (imputed)	N
618	chr6_dbb_hap3	4407165	4407166	rs3129205	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	COL11A2	rs3129205-T	0.348	3E-25	(Collagen alpha-2(XI) chain, COL11A2.11278.4.3)	0.27	[0.21-0.33] unit increase	Affymetrix [10572788] (imputed)	N
618	chr6_dbb_hap3	4413536	4413537	rs2229790	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	6p21.32	COL11A2	rs2229790-?	NR	3E-13		0.313	[0.23-0.4] unit decrease	Illumina [34656550] (imputed)	N
618	chr6_dbb_hap3	4417367	4417368	rs73741509	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.32		rs73741509-C	0.971	2E-14				Affymetrix [10369434] (imputed)	N
618	chr6_dbb_hap3	4417944	4417945	rs2855446	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6p21.32	Intergenic	rs2855446-A	0.6847	4E-9	(MTAG)	0.0083	[0.0056-0.011] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
618	chr6_dbb_hap3	4419804	4419805	rs2855440	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein COL11A2	5,366 Icelandic ancestry individuals	NA	6p21.32		rs2855440-T	0.3577	4E-31		0.229242	[0.19-0.27] unit decrease	Illumina [7506463] (imputed)	N
618	chr6_dbb_hap3	4420941	4420942	rs73741526	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.32		rs73741526-A	0.971	3E-13				Affymetrix [10369434] (imputed)	N
618	chr6_dbb_hap3	4422984	4422985	rs147927477	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Height	458,235 European ancestry individuals	NA	6p21.32		rs147927477-?	NR	9E-12		0.215425	[0.15-0.28] unit decrease	NR [9800000] (imputed)	N
618	chr6_dbb_hap3	4425254	4425255	rs2254287	18193043	Willer CJ	2008-01-13	Nat Genet	Newly identified loci that influence lipid concentrations and risk of coronary artery disease.	LDL cholesterol	8,589 European ancestry individuals	12,981 European ancestry individuals	6p21.32	B3GALT4	rs2254287-G	0.38	5E-8		1.91	[NR] mg/dl increase	Affymetrix, Illumina [~ 2261000] (imputed)	N
618	chr6_dbb_hap3	4425549	4425550	rs1799908	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	COL11A2	rs1799908-A	NR	5E-10		0.0178819	[0.012-0.024] unit decrease	Affymetrix [321016] (imputed)	N
618	chr6_dbb_hap3	4433186	4433187	rs41317102	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	6p21.32	COL11A2	rs41317102-C	NR	2E-7		0.247907	[0.15-0.34] unit increase	Illumina [at least 950000] (imputed)	N
618	chr6_dbb_hap3	4434834	4434835	rs9277934	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	COL11A2	rs9277934-T	NR	2E-10		0.0194123	[0.013-0.025] unit increase	Affymetrix [321016] (imputed)	N
618	chr6_dbb_hap3	4441523	4441524	rs144092339	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein COL11A2	5,366 Icelandic ancestry individuals	NA	6p21.32		rs144092339-T	0.02245	3E-20		0.580629	[0.46-0.7] unit increase	Illumina [7506463] (imputed)	N
618	chr6_dbb_hap3	4441523	4441524	rs144092339	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs144092339-T	0.037	1E-22	(Collagen alpha-2(XI) chain, COL11A2.11278.4.3)	0.63	[0.51-0.75] unit increase	Affymetrix [10572788] (imputed)	N
618	chr6_dbb_hap3	4442967	4442968	rs1050673	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.32	NR	rs1050673-G	0.64734375	4E-21	(COL11A2, 11278_4_3)	0.24454433	[0.19-0.29] unit increase	Illumina [> 1000000] (imputed)	N
618	chr6_dbb_hap3	4442967	4442968	rs1050673	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.32	NR	rs1050673-G	0.64734375	3E-9	(MICA, 2730_58_2)	0.15462574	[0.1-0.21] unit increase	Illumina [> 1000000] (imputed)	N
618	chr6_dbb_hap3	4450698	4450699	rs35690712	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs35690712-C	0.03	6E-22	(Collagen alpha-2(XI) chain, COL11A2.11278.4.3)	0.69	[0.55-0.83] unit increase	Affymetrix [10572788] (imputed)	N
618	chr6_dbb_hap3	4456089	4456090	rs421446	27244555	Li Y	2016-05-31	Nat Commun	Genome-wide association study identifies 8p21.3 associated with persistent hepatitis B virus infection among Chinese.	Persistent hepatitis B virus infection	1,251 Chinese ancestry persistently infected cases, 1,057 Chinese ancestry spontaneously recovered controls	3,905 Chinese ancestry persistently infected cases, 3,356 Chinese ancestry spontaneously recovered controls	6p21.32	MIR219A1	rs421446-G		3E-6		1.47	[1.25-1.72]	Affymetrix, Illumina [up to 4494311] (imputed)	N
619	chr6_dbb_hap3	4473720	4473721	rs146306986	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.32	TAPBP	rs146306986-C	0.99	3E-96	(TAPBP, 12378_71_3)	2.5151718	[2.29-2.74] unit decrease	Illumina [> 1000000] (imputed)	N
619	chr6_dbb_hap3	4474222	4474223	rs1705001	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	6p21.32	intergenic	rs1705001-A	0.2413	4E-11		0.0133	[0.0094-0.0172] unit increase	Affymetrix [18391927] (imputed)	N
619	chr6_dbb_hap3	4475784	4475785	rs411919	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	6p21.32	RING1	rs411919-G	0.73	8E-14				NR [> 9500000] (imputed)	N
619	chr6_dbb_hap3	4478922	4478923	rs77206300	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PDIA3	5,363 Icelandic ancestry individuals	NA	6p21.32		rs77206300-A	0.01105	6E-12		0.630021	[0.45-0.81] unit increase	Illumina [7506463] (imputed)	N
619	chr6_dbb_hap3	4485585	4485586	rs9277952	23817570	Shi Y	2013-06-30	Nat Genet	A genome-wide association study identifies two new cervical cancer susceptibility loci at 4q12 and 17q12.	Cervical cancer	Up to 1,364 Han Chinese ancestry cases, up to 3,028 Han Chinese ancestry controls	4,167 Han Chinese ancestry cases, 7,196 Han Chinese ancestry controls	6p21.32	intergenic	rs9277952-?	0.53	2E-9	(Matched)	1.18	[1.12-1.23]	Affymetrix [563339]	N
619	chr6_dbb_hap3	4521190	4521191	rs17215231	32424353	Zhang H	2020-05-18	Nat Genet	Genome-wide association study identifies 32 novel breast cancer susceptibility loci from overall and subtype-specific analyses.	Breast cancer (estrogen-receptor negative, progesterone-receptor negative, and human epidermal growth factor-receptor negative)	8,602 European ancestry triple negative cases, 9,414 European ancestry BRCA1 mutation carrier cases, 100,971 European ancestry controls	NA	6p21.32	NR	rs17215231-C	0.92	9E-13		1.1764705	[1.12-1.23]	Illumina [~ 9700000] (imputed)	N
619	chr6_dbb_hap3	4527839	4527840	rs3445	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	6p21.32	NR	rs3445-A	0.156	1E-9		0.00933656	[0.0063-0.0123] unit increase	NR [9732723] (imputed)	N
619	chr6_dbb_hap3	4531797	4531798	rs469064	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TAPBP	5,359 Icelandic ancestry individuals	NA	6p21.32		rs469064-C	0.4368	9E-113		0.401004	[0.37-0.44] unit increase	Illumina [7506463] (imputed)	N
619	chr6_dbb_hap3	4553287	4553288	rs144706539	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TAPBP	5,359 Icelandic ancestry individuals	NA	6p21.32		rs144706539-A	0.0122	6E-205		2.36433	[2.21-2.52] unit increase	Illumina [7506463] (imputed)	N
619	chr6_dbb_hap3	4553287	4553288	rs144706539	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	TAPBP	rs144706539-A	0.015	5E-94	(Tapasin, TAPBP.12378.71.3)	1.98	[1.78-2.18] unit increase	Affymetrix [10572788] (imputed)	N
619	chr6_dbb_hap3	4558093	4558094	rs9277972	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	6p21.32	NA	rs9277972-A	0.8069	5E-15		0.017	[0.013-0.021] unit decrease	NR [~ 27400000] (imputed)	N
619	chr6_dbb_hap3	4561632	4561633	rs2282851	34050765	Zhang L	2021-05-29	J Clin Endocrinol Metab	Joint genome-wide association analyses identified 49 novel loci for age at natural menopause.	Age at menopause	181,219 European ancestry individuals, 43,861 East Asian ancestry individuals	NA	6p21.32		rs2282851-T	0.28	1E-9		0.08	unit increase	Illumina [2093892] (imputed)	N
619	chr6_dbb_hap3	4561632	4561633	rs2282851	34050765	Zhang L	2021-05-29	J Clin Endocrinol Metab	Joint genome-wide association analyses identified 49 novel loci for age at natural menopause.	Age at menopause	181,219 European ancestry individuals	NA	6p21.32		rs2282851-T	0.28	2E-9		0.09	unit increase	Illumina [2398641] (imputed)	N
619	chr6_dbb_hap3	4563660	4563661	rs1061801	33128006	Timmins IR	2020-10-30	Commun Biol	Genome-wide association study of self-reported walking pace suggests beneficial effects of brisk walking on health and survival.	Walking pace	450,967 European ancestry individuals	NA	6p21.32	ZBTB22	rs1061801-G	NR	5E-8		0.00866168	[0.0055-0.0118] unit increase	Affymetrix [10061374] (imputed)	N
619	chr6_dbb_hap3	4563660	4563661	rs1061801	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (father's age at death)	309,383 European ancestry individuals	NA	6p21.32	NR	rs1061801-A	NR	3E-6		0.01574	[0.0091-0.0224] unit decrease	Illumina [541614]	N
619	chr6_dbb_hap3	4563660	4563661	rs1061801	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (father's age at death or father's attained age)	up to 699,000 European ancestry individuals	NA	6p21.32	NR	rs1061801-G		2E-6				Illumina [458865]	N
619	chr6_dbb_hap3	4563660	4563661	rs1061801	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6p21.32		rs1061801-A	0.187	1E-9		0.011	[0.0075-0.0145] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
619	chr6_dbb_hap3	4563660	4563661	rs1061801	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6p21.32	Intergenic	rs1061801-A	0.187	2E-10	(MTAG)	0.0108	[0.0075-0.0141] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
619	chr6_dbb_hap3	4575428	4575429	rs9277979	30120083	Ferguson A	2018-08-14	EBioMedicine	Genome-Wide Association Study of Circadian Rhythmicity in 71,500 UK Biobank Participants and Polygenic Association with Mood Instability.	Disrupted circadian rhythm (low relative amplitude of rest-activity cycles)	at least 2,700 European ancestry cases, at least 68,300 European ancestry controls	NA	6p21.32	DAXX	rs9277979-T	NR	2E-6		0.167	unit increase	Affymetrix [7969123] (imputed)	N
620	chr6_dbb_hap3	4587558	4587559	rs9277988	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6p21.32	NR	rs9277988-?	NR	3E-13				Affymetrix [~ 8270000] (imputed)	N
620	chr6_dbb_hap3	4587558	4587559	rs9277988	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	6p21.32	NR	rs9277988-C	0.1959	7E-14		0.023318363	[0.017-0.029] unit increase	Affymetrix [10549349] (imputed)	N
620	chr6_dbb_hap3	4587558	4587559	rs9277988	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	6p21.32	NR	rs9277988-C	0.188	7E-8		0.0104018	[0.0066-0.0142] unit decrease	NR [9732723] (imputed)	N
620	chr6_dbb_hap3	4589452	4589453	rs3130269	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs3130269-A	0.514	3E-63	(Tapasin, TAPBP.12378.71.3)	0.39	[0.35-0.43] unit decrease	Affymetrix [10572788] (imputed)	N
620	chr6_dbb_hap3	4590434	4590435	rs184722928	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	Systemic lupus erythematosus	1,639 East Asian ancestry cases, 2,410 East Asian ancestry controls	NA			rs184722928-A	NR	7E-6		0.6037	[0.34-0.87] unit decrease	Illumina [NR] (imputed)	N
620	chr6_dbb_hap3	4593770	4593771	rs9277992	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		6p21.32	DAXX	rs9277992-G	0.810445	6E-14		0.0132109	[0.0098-0.0167] unit decrease	Affymetrix [12370749]	N
620	chr6_dbb_hap3	4597765	4597766	rs187208364	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	6p21.32		rs187208364-?	NR	5E-8				Affymetrix [NR] (imputed)	N
620	chr6_dbb_hap3	4601127	4601128	rs9278004	34197731	Li Q	2021-06-23	Am J Hum Genet	Whole-exome sequencing reveals common and rare variants in immunologic and neurological genes implicated in achalasia.	Idiopathic achalasia	280 Chinese Han ancestry cases, 1,121 Chinese Han ancestry controls	NA	6p21.32		rs9278004-A	0.045	6E-6		2.9	[1.83-4.6]	Illumina [476650] (imputed)	N
620	chr6_dbb_hap3	4608018	4608019	rs9278020	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	6p21.32	NR	rs9278020-A	0.1012	4E-8				NR [9056863] (imputed)	N
620	chr6_dbb_hap3	4610023	4610024	rs114984535	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	6p21.32	DAXX, KIFC1	rs114984535-T	0.985403356	2E-6		1.2639532	[1.15-1.39]	Illumina [10439017] (imputed)	N
585	chr6_mann_hap4	168	169	rs150814685	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma and major depressive disorder	46,802 European ancestry asthma cases, 59,851 European ancestry major depressive disorder cases, 460,635 European ancestry controls	NA	6p22.1	C6orf100, GPX5, GPX6, HCG14, LOC401242, NKAPL, OR2B3, OR2J2, OR2J3, OR2W1, TRIM27, ZBED9, ZKSCAN3, ZKSCAN4, ZNF311, ZSCAN12, ZSCAN23, ZSCAN26, ZSCAN31, LOC100129636, PGBD1	rs150814685-?	NR	2E-11				Affymetrix [up to 13554551] (imputed)	N
585	chr6_mann_hap4	1363	1364	rs16894234	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6p22.1	NR	rs16894234-?	NR	3E-12				Affymetrix [~ 8270000] (imputed)	N
585	chr6_mann_hap4	15647	15648	rs1233578	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	RPSAP2	rs1233578-G	NR	2E-8		0.0228089	[0.015-0.031] unit decrease	Affymetrix [323858] (imputed)	N
585	chr6_mann_hap4	15647	15648	rs1233578	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p22.1	NR	rs1233578-G	0.18	4E-9		1.13	[1.08-1.18]	Affymetrix [9886854] (imputed)	N
585	chr6_mann_hap4	15647	15648	rs1233578	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p22.1	NR	rs1233578-G	0.18	4E-14			[NR]	Affymetrix [9886854] (imputed)	N
585	chr6_mann_hap4	15647	15648	rs1233578	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p22.1	NR	rs1233578-G	0.18	2E-11		1.11	[1.08-1.14]	Affymetrix [9886854] (imputed)	N
585	chr6_mann_hap4	15647	15648	rs1233578	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p22.1	NR	rs1233578-G	0.18	8E-14			[NR]	Affymetrix [9886854] (imputed)	N
585	chr6_mann_hap4	15647	15648	rs1233578	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in non-current smokers	16,488 European ancestry cases, 169,688 European ancestry controls	NA	6p22.1	NR	rs1233578-G	0.18	2E-11		1.11	[1.08-1.14]	Affymetrix [9886854] (imputed)	N
585	chr6_mann_hap4	15647	15648	rs1233578	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in never smokers	8,631 European ancestry cases, 120,544 European ancestry controls	NA	6p22.1	NR	rs1233578-G	0.18	3E-9		1.13	[1.09-1.18]	Affymetrix [9886854] (imputed)	N
585	chr6_mann_hap4	15647	15648	rs1233578	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in ever smokers	12,446 European ancestry cases, 59,145 European ancestry controls	NA	6p22.1	NR	rs1233578-G	0.18	3E-7		1.1	[1.06-1.15]	Affymetrix [9886854] (imputed)	N
585	chr6_mann_hap4	15647	15648	rs1233578	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	6p22.1	TRIM27	rs1233578-G	0.18	2E-17				NR [> 9500000] (imputed)	N
585	chr6_mann_hap4	15647	15648	rs1233578	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	6p22.1	TRIM27	rs1233578-G	0.17936300000000005	4E-12		1.0560242	[1.03991341766738-1.07238465256811]	NR [9572556] (imputed)	N
585	chr6_mann_hap4	15647	15648	rs1233578	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	6p22.1	NR	rs1233578-A	NR	1E-9		6.098	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
585	chr6_mann_hap4	15647	15648	rs1233578	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	RPSAP2	rs1233578-A	NR	5E-12		6.899	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
585	chr6_mann_hap4	15647	15648	rs1233578	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls, 2,149 African ancestry cases, 6,055 African ancestry controls, 1,239 Japanese ancestry cases, 3,976 Japanese ancestry controls, 606 Latino cases, 792 Latino controls	NA	6p22.1	GPX5, TRIM27	rs1233578-G	0.13	6E-7		1.09	[1.05-1.12]	Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
585	chr6_mann_hap4	15647	15648	rs1233578	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls	NA	6p22.1	GPX5, TRIM27	rs1233578-G	0.13	5E-9		0.1	[0.061-0.139] unit increase	Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
585	chr6_mann_hap4	17351	17353	rs372002372	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs372002372-?		2E-10	(Posterior corona radiata )			NR [8955960] (imputed)	N
585	chr6_mann_hap4	17351	17353	rs372002372	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs372002372-?		1E-11	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
585	chr6_mann_hap4	17351	17353	rs372002372	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs372002372-?		1E-11	(Superior corona radiata)			NR [8955960] (imputed)	N
585	chr6_mann_hap4	17351	17353	rs372002372	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs372002372-?		5E-8	(Average across all tracts)			NR [8955960] (imputed)	N
585	chr6_mann_hap4	17351	17353	rs372002372	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs372002372-?		2E-11	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
585	chr6_mann_hap4	17351	17353	rs372002372	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs372002372-?		2E-10	(Posterior corona radiata )			NR [8955960] (imputed)	N
585	chr6_mann_hap4	18161	18162	rs7763390	33740410	Warrier V	2021-03-16	Lancet Psychiatry	Gene-environment correlations and causal effects of childhood maltreatment on physical and mental health: a genetically informed approach.	Childhood maltreatment	185,414 European ancestry individuals	NA	6p22.1	NR	rs7763390-A	0.84	7E-9		0.027	[0.017-0.037] unit decrease	Affymetrix, Illumina [at least 500527] (imputed)	N
585	chr6_mann_hap4	23155	23156	rs1233587	32358547	Persyn E	2020-05-01	Nat Commun	Genome-wide association study of MRI markers of cerebral small vessel disease in 42,310 participants.	White matter integrity (mean diffusivity)	17,467 European ancestry individuals	NA	6p22.1	ZFP57	rs1233587-T	0.295257	6E-12		0.325855	[0.23-0.42] unit decrease	Affymetrix [NR] (imputed)	N
585	chr6_mann_hap4	23155	23156	rs1233587	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs1233587-?		2E-8	(Anterior corona radiata)			NR [8955960] (imputed)	N
585	chr6_mann_hap4	24934	24935	rs1742741	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs1742741-?		4E-9	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
585	chr6_mann_hap4	24934	24935	rs1742741	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs1742741-?		8E-9	(Retrolenticular part of internal capsule)			NR [8955960] (imputed)	N
585	chr6_mann_hap4	24934	24935	rs1742741	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	6p22.1	NR	rs1742741-?		2E-8	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
585	chr6_mann_hap4	24934	24935	rs1742741	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	6p22.1	NR	rs1742741-?		2E-8	(Average across all tracts)			NR [8955960] (imputed)	N
585	chr6_mann_hap4	27088	27089	rs568609045	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium HDL	115,082 European ancestry individuals	NA	6p22.1		rs568609045-G	0.908816	1E-8		0.0550229	[0.036-0.074] unit increase	NR [11722792] (imputed)	N
585	chr6_mann_hap4	27088	27089	rs568609045	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large HDL	115,082 European ancestry individuals	NA	6p22.1		rs568609045-G	0.908816	4E-9		0.0550531	[0.037-0.073] unit increase	NR [11722792] (imputed)	N
585	chr6_mann_hap4	27088	27089	rs568609045	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in HDL	115,082 European ancestry individuals	NA	6p22.1		rs568609045-G	0.908816	4E-8		0.052683	[0.034-0.071] unit increase	NR [11722792] (imputed)	N
585	chr6_mann_hap4	28400	28400	rs71548373	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	6p22.1	intergenic	rs71548373-?	NR	6E-13		0.0283	[0.021-0.035] unit decrease	Affymetrix [5701386] (imputed)	N
585	chr6_mann_hap4	30993	30994	rs1233595	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs1233595-?		2E-9	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
585	chr6_mann_hap4	30993	30994	rs1233595	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs1233595-?		1E-9	(Average across all tracts)			NR [8955960] (imputed)	N
585	chr6_mann_hap4	30993	30994	rs1233595	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs1233595-?		4E-9	(Average across all tracts)			NR [8955960] (imputed)	N
585	chr6_mann_hap4	30993	30994	rs1233595	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs1233595-?		3E-9	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
585	chr6_mann_hap4	38076	38077	rs1233604	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p22.1	AL662890.1	rs1233604-A	NR	4E-8		0.0237945	[0.015-0.032] unit decrease	Affymetrix [319769] (imputed)	N
585	chr6_mann_hap4	40373	40374	rs9257158	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p22.1	AL662890.1	rs9257158-G	NR	1E-8		0.0194989	[0.013-0.026] unit decrease	Affymetrix [323123] (imputed)	N
585	chr6_mann_hap4	68374	68375	rs9257190	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p22.1	AL662890.3	rs9257190-G	NR	2E-10		0.0253484	[0.018-0.033] unit decrease	Affymetrix [323858] (imputed)	N
585	chr6_mann_hap4	69760	69760	rs202065757	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p22.1	NR	rs202065757-?	NR	3E-6		0.1767	[0.1-0.25] unit increase	Illumina [at least 560000] (imputed)	N
585	chr6_mann_hap4	71527	71528	rs141456208	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs141456208-?		4E-6		1.75	[1.38-2.23]	Illumina [7645193] (imputed)	N
585	chr6_mann_hap4	74083	74084	rs7739915	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p22.1		rs7739915-G	0.829881	3E-8		0.0298334	[0.019-0.04] unit decrease	NR [11722792] (imputed)	N
585	chr6_mann_hap4	74598	74599	rs2013652	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p22.1		rs2013652-T	0.605	3E-27				Affymetrix [10369434] (imputed)	N
585	chr6_mann_hap4	79517	79518	rs4324798	19836008	Landi MT	2009-10-15	Am J Hum Genet	A genome-wide association study of lung cancer identifies a region of chromosome 5p15 associated with risk for adenocarcinoma.	Lung adenocarcinoma	5,739 European ancestry cases, 5,848 European ancestry controls	7,561 European ancestry cases, 13,818 European ancestry controls	6p22.1	TRNAA-UGC	rs4324798-A	0.09	2E-8		1.16	[1.09-1.24]	Illumina [515922]	N
585	chr6_mann_hap4	82319	82319	rs142204688	32227112	Lee MA	2020-03-30	Hum Mol Genet	Common variation at 16p11.2 is associated with glycosuria in pregnancy: Findings from a genome-wide association study in European women.	Glycosuria in pregnancy (offspring genotype effect)	747 European ancestry cases, 2,991 European ancestry controls	NA	6p22.1	NR	rs142204688-ATTT	0.024554775	2E-9		3.1145043	[2.74466796-3.4843406]	Illumina [9873828] (imputed)	N
585	chr6_mann_hap4	90593	90594	rs9257226	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6p22.1	XXbac-BPG308K3.5	rs9257226-G	NR	2E-9		0.0237897	[0.016-0.032] unit decrease	Affymetrix [321114] (imputed)	N
585	chr6_mann_hap4	95081	95082	rs67662386	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	6p22.1	NR	rs67662386-?	NR	5E-7		0.135361	[0.082-0.188] unit increase	NR [13958389] (imputed)	N
585	chr6_mann_hap4	95478	95479	rs187766969	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p22.1	NR	rs187766969-?	NR	3E-10		0.1907	[0.13-0.25] unit decrease	Illumina [at least 560000] (imputed)	N
585	chr6_mann_hap4	95877	95878	rs209181	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	XXbac-BPG308K3.5	rs209181-A	NR	3E-15		0.032556	[0.024-0.041] unit decrease	Affymetrix [323858] (imputed)	N
585	chr6_mann_hap4	95877	95878	rs209181	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	XXbac-BPG308K3.5	rs209181-A	NR	4E-15		0.0325128	[0.024-0.041] unit decrease	Affymetrix [127266] (imputed)	N
585	chr6_mann_hap4	97304	97305	rs3118359	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	6p22.1	intergenic	rs3118359-T	0.0838	3E-13		0.0378	[0.028-0.048] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
585	chr6_mann_hap4	99256	99257	rs3135296	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Neuroticism	274,107 British ancestry individuals	NA	6p22.1	NR	rs3135296-?	NR	6E-6		1.0090817	[1.01-1.01]	NR [8968716] (imputed)	N
585	chr6_mann_hap4	99256	99257	rs3135296	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Major depressive disorder (lifetime)	16,301 British ancestry cases, 50,870 British ancestry controls	NA	6p22.1	NR	rs3135296-?	NR	5E-7		1.1049724	[1.06-1.15]	NR [5276842] (imputed)	N
585	chr6_mann_hap4	99256	99257	rs3135296	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Help-seeking from a GP (without major depressive disorder symptoms)	8,632 British ancestry cases, 49,493 British ancestry controls	NA	6p22.1	NR	rs3135296-?	NR	1E-6		1.1350738	[1.08-1.19]	NR [5276842] (imputed)	N
585	chr6_mann_hap4	99256	99257	rs3135296	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Help-seeking from a GP	113,262 British ancestry cases, 219,360 British ancestry controls	NA	6p22.1	NR	rs3135296-A	0.88	4E-12		1.0570824	[1.04-1.07]	NR [5276842] (imputed)	N
585	chr6_mann_hap4	99471	99472	rs3131337	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	6p22.1	TRIM27	rs3131337-G	0.871891	1E-14		0.0229188	[0.017-0.029] unit increase	Affymetrix [NR] (imputed)	N
585	chr6_mann_hap4	99471	99472	rs3131337	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	6p22.1	NR	rs3131337-?	NR	7E-6		0.0811	[0.046-0.116] unit decrease	Illumina [at least 560000] (imputed)	N
585	chr6_mann_hap4	99860	99861	rs3132379	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	XXbac-BPG308K3.5	rs3132379-T	NR	1E-8		0.0232897	[0.015-0.031] unit decrease	Affymetrix [323858] (imputed)	N
585	chr6_mann_hap4	99860	99861	rs3132379	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	XXbac-BPG308K3.5	rs3132379-T	NR	2E-8		0.0229592	[0.015-0.031] unit decrease	Affymetrix [127266] (imputed)	N
585	chr6_mann_hap4	103410	103411	rs9278091	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA	6p22.1	NR	rs9278091-?	NR	6E-7		0.0586	[0.036-0.082] unit increase	Illumina [at least 560000] (imputed)	N
585	chr6_mann_hap4	103681	103682	rs150548387	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Daytime sleep phenotypes	874 European ancestry individuals	NA	6p22.1	RPL13P, ZNF90P2, HCG14, TRIM27	rs150548387-G	NR	7E-7	(daytime resting)	2.54	[1.54-3.54] unit decrease	Affymetrix [7141204] (imputed)	N
585	chr6_mann_hap4	106691	106692	rs9257248	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p22.1	NR	rs9257248-T	0.114	4E-11		0.0123	[0.0086-0.016] unit decrease	NR [7666894] (imputed)	N
585	chr6_mann_hap4	106691	106692	rs9257248	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p22.1	LOC442181, LOC401242	rs9257248-A	0.217	7E-20				Illumina [118177]	N
585	chr6_mann_hap4	120121	120122	rs561122079	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	6p22.1	XXbac-BPG308K3.5	rs561122079-T	0.0012	5E-6		1.4759	[0.84-2.11] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
585	chr6_mann_hap4	124495	124496	rs9257270	32592749	Butler-Laporte G	2020-06-24	Clin Microbiol Infect	Elevated body-mass index is associated with an increased risk of infectious disease admissions and mortality: a mendelian randomization study.	Sepsis (hospital admission)	4,403 European ancestry cases, 17,612 European ancestry controls	NA	6p22.1	ZFP57	rs9257270-A	0.8	2E-8		0.018	[0.012-0.024] unit increase	NR [NR]	N
586	chr6_mann_hap4	134241	134250	rs71554969	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p22.1	XXbac-BPG308K3.6	rs71554969-C	NR	8E-12		0.0218335	[0.016-0.028] unit decrease	Affymetrix [323123] (imputed)	N
586	chr6_mann_hap4	135011	135012	rs3131336	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	6p22.1	TRIM27	rs3131336-C	0.882895	2E-18		0.019064	[0.015-0.023] unit decrease	Affymetrix [12370749]	N
586	chr6_mann_hap4	136544	136548	rs138792987	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Inguinal hernia	16,725 European ancestry cases, 428,356 European ancestry controls, 1,664 East Asian ancestry cases, 177,062 East Asian ancestry controls	NA	6p22.1		rs138792987-G	NR	8E-11		0.1283	[0.09-0.167] unit decrease	Affymetrix, Illumina [25841416] (imputed)	N
586	chr6_mann_hap4	143308	143309	rs3118365	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	6p22.1	LINC01623	rs3118365-A	0.0924	6E-12		0.0459	[0.033-0.059] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
586	chr6_mann_hap4	143339	143340	rs4484511	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6p22.1	NR	rs4484511-?	NR	7E-14				Affymetrix [~ 8270000] (imputed)	N
586	chr6_mann_hap4	143650	143651	rs113317416	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	XXbac-BPG308K3.6	rs113317416-T	NR	5E-10		0.0278345	[0.019-0.037] unit decrease	Affymetrix [321016] (imputed)	N
586	chr6_mann_hap4	187551	187552	rs3131099	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Liver iron content	32,858 European ancestry individuals	NA	6p22.1	TRIM27	rs3131099-?	NR	9E-18	(conditional)	0.0654	NR mg/g decrease	Affymetrix [9390170] (imputed)	N
586	chr6_mann_hap4	192816	192817	rs144996521	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	6p22.1	TRIM27	rs144996521-G	0.999717	5E-10		0.148497	[0.1-0.2] unit increase	NR [13737936] (imputed)	N
586	chr6_mann_hap4	196935	196936	rs3131103	31219150	Ekenberg C	2019-06-13	J Infect Dis	Single nucleotide polymorphisms in HLA alleles are associated with HIV-1 viral load in demographically diverse, ART-naive participants from the START trial.	Pre-treatment viral load in HIV-1 infection	1,398 European ancestry individuals, 572 Black individuals, 418 Hispanic individuals, 13 Asian ancestry individuals, 39 individuals	NA	6p22.1	TRIM27	rs3131103-G	0.07	9E-16		0.37	[0.28-0.46] unit decrease	Affymetrix [339439]	N
586	chr6_mann_hap4	198200	198201	rs28400872	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	6p22.1		rs28400872-C	0.340661	5E-11		0.0196364	[0.014-0.025] unit decrease	Illumina [13479924] (imputed)	N
586	chr6_mann_hap4	200176	200177	rs9468445	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p22.1	NR	rs9468445-?	NR	4E-9		0.1617	[0.11-0.21] unit increase	Illumina [at least 560000] (imputed)	N
586	chr6_mann_hap4	200315	200316	rs2015436	26087016	Pappa I	2015-06-18	Am J Med Genet B Neuropsychiatr Genet	A genome-wide approach to children's aggressive behavior: The EAGLE consortium.	Childhood and early adolescence aggressive behavior	18,988 European ancestry individuals	NA	6p22.1	TRIM27	rs2015436-T	0.73	2E-6				Affymetrix, Illumina [up to 3856236] (imputed)	N
586	chr6_mann_hap4	201034	201035	rs1233508	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	6p22.1	TRIM27	rs1233508-T	0.463	2E-16		0.0098	[0.0074-0.0122] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
586	chr6_mann_hap4	201258	201261	rs200822404	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	6p22.1	NR	rs200822404-?	NR	4E-6		0.1076	[0.062-0.153] unit decrease	Illumina [at least 560000] (imputed)	N
586	chr6_mann_hap4	208115	208116	rs144965899	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6p22.1	Intergenic	rs144965899-C	0.0463	8E-11	(MTAG)	0.0206	[0.014-0.027] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
586	chr6_mann_hap4	209196	209197	rs3130895	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p22.1	TRIM27, C6orf100	rs3130895-A	0.218	4E-19				Illumina [118177]	N
586	chr6_mann_hap4	215803	215804	rs140736187	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p22.1	NR	rs140736187-?	NR	2E-7		0.2249	[0.14-0.31] unit increase	Illumina [at least 560000] (imputed)	N
586	chr6_mann_hap4	218145	218146	rs111469561	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p22.1	NR	rs111469561-?	NR	1E-6		0.29	[0.17-0.41] unit increase	Illumina [at least 560000] (imputed)	N
586	chr6_mann_hap4	218512	218513	rs763009	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	6p22.1	LINC01556, ZNF311	rs763009-?	NR	7E-7		0.014226723	[0.0086-0.0199] unit decrease	Illumina [27896057] (imputed)	N
586	chr6_mann_hap4	219656	219657	rs4947339	20526338	Johnson AD	2010-06-06	Nat Genet	Genome-wide meta-analyses identifies seven loci associated with platelet aggregation in response to agonists.	Platelet aggregation	Up to 3,991 European ancestry individuals	Up to 840 African American individuals	6p22.1	TRIM27	rs4947339-T	0.438	2E-6	(epinehprine)			Affymetrix, Illumina [~ 2330000] (imputed)	N
586	chr6_mann_hap4	219998	219999	rs3130844	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA	6p22.1	NR	rs3130844-?	NR	7E-6		0.0564	[0.032-0.081] unit increase	Illumina [at least 560000] (imputed)	N
586	chr6_mann_hap4	220239	220240	rs114683528	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Daytime sleep phenotypes	874 European ancestry individuals	NA	6p22.1	C6orf100, KRT18P1, TRIM27, HCG15, HCG16, ZNF311	rs114683528-T	NR	1E-6	(daytime resting)	2.435	[1.46-3.41] unit decrease	Affymetrix [7141204] (imputed)	N
586	chr6_mann_hap4	229624	229625	rs9257408	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	6p22.1	NR	rs9257408-G	0.4934	2E-10		0.0314	[0.022-0.041] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
586	chr6_mann_hap4	229624	229625	rs9257408	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	6p22.1		rs9257408-C	NR	3E-7		1.03	[1.02-1.04]	Affymetrix, Illumina [NR] (imputed)	N
586	chr6_mann_hap4	229624	229625	rs9257408	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p22.1	intergenic	rs9257408-C	0.41	7E-8	(EA)	1.02	[1-1.04] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
586	chr6_mann_hap4	229624	229625	rs9257408	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	46,785 European ancestry cases, 42,892 European ancestry controls	NA	6p22.1	intergenic	rs9257408-C	0.38	5E-7		1.05	[1.03-1.08]	Affymetrix, Illumina [~ 14000000] (imputed)	N
586	chr6_mann_hap4	229624	229625	rs9257408	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	15,748 European ancestry cases, 18,084 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls	6p22.1	Intergenic	rs9257408-C	0.38	5E-8		1.05	[1.03-1.08]	Affymetrix, Illumina [~ 11600000] (imputed)	N
586	chr6_mann_hap4	237756	237757	rs148696809	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	6p22.1		rs148696809-?	NR	7E-9				NR [NR]	N
586	chr6_mann_hap4	237756	237757	rs148696809	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma and major depressive disorder	46,802 European ancestry asthma cases, 59,851 European ancestry major depressive disorder cases, 460,635 European ancestry controls	NA	6p22.1	Intergenic	rs148696809-?	NR	5E-9				Affymetrix [up to 13554551] (imputed)	N
586	chr6_mann_hap4	237756	237757	rs148696809	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	6p22.1	Intergenic	rs148696809-T	0.8828	8E-20		0.0406	[0.032-0.049] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
586	chr6_mann_hap4	237756	237757	rs148696809	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Squamous cell lung carcinoma	7,426 European ancestry cases, 55,627 European ancestry controls	NA	6p22.1	LINC01556, ZNF311	rs148696809-C	0.086719155	4E-11		1.2477136	[1.168498995-1.332298319]	Illumina [10439017] (imputed)	N
586	chr6_mann_hap4	237756	237757	rs148696809	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	6p22.1	LINC01556, ZNF311	rs148696809-C	0.086604881	3E-12		1.1571189	[1.11078617-1.205384399]	Illumina [10439017] (imputed)	N
586	chr6_mann_hap4	247488	247489	rs3130887	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Polyunsaturated fatty acid levels	115,006 European ancestry individuals	NA	6p22.1		rs3130887-G	0.881305	8E-10		0.0379668	[0.026-0.05] unit increase	NR [11722792] (imputed)	N
586	chr6_mann_hap4	257694	257695	rs3129791	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p22.1	NR	rs3129791-A	0.1148	2E-11		0.0125	[0.0088-0.0162] unit decrease	NR [7666894] (imputed)	N
587	chr6_mann_hap4	268912	268913	rs114357009	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	6p22.1	C6orf100, HCG14, LOC401242, LOC100129636, OR2B3, OR2H1, OR2J2, OR2J3, OR2W1, OR5V1, OR10C1, OR11A1, OR12D2, OR12D3, OR14J1, TRIM27, ZNF311	rs114357009-A	0.049997	2E-10		1.1579555	[1.11-1.2]	Affymetrix [8274727] (imputed)	N
587	chr6_mann_hap4	276898	276899	rs77514138	32227112	Lee MA	2020-03-30	Hum Mol Genet	Common variation at 16p11.2 is associated with glycosuria in pregnancy: Findings from a genome-wide association study in European women.	Glycosuria in pregnancy (offspring genotype effect)	747 European ancestry cases, 2,991 European ancestry controls	NA	6p22.1	NR	rs77514138-T	0.01849013	2E-9		3.6386764	[3.217150999-4.060201879]	Illumina [9873828] (imputed)	N
587	chr6_mann_hap4	284107	284108	rs3130893	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium HDL	115,082 European ancestry individuals	NA	6p22.1		rs3130893-A	0.880989	2E-10		0.037629	[0.026-0.049] unit increase	NR [11722792] (imputed)	N
587	chr6_mann_hap4	284107	284108	rs3130893	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-6 fatty acid levels	115,006 European ancestry individuals	NA	6p22.1		rs3130893-A	0.880993	9E-9		0.0356831	[0.024-0.048] unit increase	NR [11722792] (imputed)	N
587	chr6_mann_hap4	284107	284108	rs3130893	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Linoleic acid levels	115,006 European ancestry individuals	NA	6p22.1		rs3130893-A	0.880993	5E-9		0.0364876	[0.024-0.049] unit increase	NR [11722792] (imputed)	N
587	chr6_mann_hap4	286674	286675	rs3131082	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p22.1	NR	rs3131082-?	NR	2E-7		0.1949	[0.12-0.27] unit decrease	Illumina [at least 560000] (imputed)	N
587	chr6_mann_hap4	288155	288156	rs3129795	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs3129795-?		8E-6		1.0526316	[1.03-1.08]	Illumina [7645193] (imputed)	N
587	chr6_mann_hap4	288155	288156	rs3129795	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs3129795-?		2E-6		1.6129031	[1.32-1.96]	Illumina [7645193] (imputed)	N
587	chr6_mann_hap4	295559	295560	rs3129797	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	6p22.1	ZNF311	rs3129797-C	0.882471	2E-20		0.0273248	[0.022-0.033] unit increase	Affymetrix [NR] (imputed)	N
587	chr6_mann_hap4	329987	329988	rs114631266	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p22.1	OR2W1	rs114631266-C	0.974	2E-6		0.284	[0.17-0.4] unit increase	Affymetrix, Illumina [7374092] (imputed)	N
587	chr6_mann_hap4	331329	331330	rs114415956	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	OR2P1P	rs114415956-T	NR	3E-10		0.0401608	[0.028-0.053] unit decrease	Affymetrix [321016] (imputed)	N
587	chr6_mann_hap4	334343	334343	rs559462124	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs559462124-?		5E-9	(Average across all tracts)			NR [8955960] (imputed)	N
587	chr6_mann_hap4	334343	334343	rs559462124	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs559462124-?		3E-9	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
587	chr6_mann_hap4	334343	334343	rs559462124	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs559462124-?		2E-9	(Posterior corona radiata )			NR [8955960] (imputed)	N
587	chr6_mann_hap4	334343	334343	rs559462124	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs559462124-?		2E-8	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
587	chr6_mann_hap4	334343	334343	rs559462124	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs559462124-?		2E-8	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
587	chr6_mann_hap4	334343	334343	rs559462124	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs559462124-?		2E-8	(Cingulate gyrus)			NR [8955960] (imputed)	N
587	chr6_mann_hap4	334343	334343	rs559462124	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs559462124-?		6E-11	(Posterior corona radiata )			NR [8955960] (imputed)	N
587	chr6_mann_hap4	334343	334343	rs559462124	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs559462124-?		4E-8	(Cingulate gyrus)			NR [8955960] (imputed)	N
587	chr6_mann_hap4	334343	334343	rs559462124	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs559462124-?		4E-11	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
587	chr6_mann_hap4	334343	334343	rs559462124	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs559462124-?		2E-8	(Average across all tracts)			NR [8955960] (imputed)	N
587	chr6_mann_hap4	334343	334343	rs559462124	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs559462124-?		2E-10	(Superior corona radiata)			NR [8955960] (imputed)	N
587	chr6_mann_hap4	334343	334343	rs559462124	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	6p22.1	NR	rs559462124-?		2E-8	(Average across all tracts)			NR [8955960] (imputed)	N
587	chr6_mann_hap4	334343	334343	rs559462124	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs559462124-?		4E-8	(Posterior corona radiata )			NR [8955960] (imputed)	N
587	chr6_mann_hap4	334343	334343	rs559462124	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs559462124-?		3E-8	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
587	chr6_mann_hap4	348100	348101	rs3131085	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p22.1	GABBR1, OR12D3, XXbac-BPG308K3.5, TRIM27, AL662791.1, OR2AD1P, OR2P1P, OR2B3, XXbac-BCX196D17.5, OR2N1P, OR2H4P, OR2B4P, XXbac-BPG308K3.6, RPL13P, ZNF90P2, HCG14, RNU6-930P, LINC01556, KRT18P1, RN7SL471P, HCG15, HCG16, ZNF311, XXbac-BPG258E24.10, OR2W1, SAR1P1, OR2J3, OR2J4P, OR2J2, AL645937.1, XXbac-BPG308J9.3, OR2U2P, OR14J1, OR5V1, OR10C1, OR11A1, XXbac-BPG13B8.11, OR2H1, UBDP1, MAS1LP1, MAS1L, RPS17P1, XXbac-BPG13B8.10, OR2I1P, UBD	rs3131085-A	0.07580321	1E-9	(EA, MHC class I polypeptide-related sequence A)	0.5111	[0.35-0.67] unit increase	Affymetrix [509946]	N
587	chr6_mann_hap4	352088	352089	rs3129787	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129787-?		6E-11	(Posterior corona radiata )			NR [8955960] (imputed)	N
587	chr6_mann_hap4	352088	352089	rs3129787	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129787-?		4E-11	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
587	chr6_mann_hap4	352088	352089	rs3129787	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129787-?		3E-8	(Cingulate gyrus)			NR [8955960] (imputed)	N
587	chr6_mann_hap4	352088	352089	rs3129787	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129787-?		5E-9	(Cingulate gyrus)			NR [8955960] (imputed)	N
587	chr6_mann_hap4	352088	352089	rs3129787	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129787-?		5E-12	(Posterior corona radiata )			NR [8955960] (imputed)	N
587	chr6_mann_hap4	352088	352089	rs3129787	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129787-?		2E-8	(Anterior corona radiata)			NR [8955960] (imputed)	N
587	chr6_mann_hap4	352088	352089	rs3129787	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129787-?		2E-12	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
587	chr6_mann_hap4	352088	352089	rs3129787	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129787-?		3E-9	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
587	chr6_mann_hap4	352088	352089	rs3129787	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129787-?		5E-8	(Posterior corona radiata )			NR [8955960] (imputed)	N
587	chr6_mann_hap4	355657	355657	rs11275996	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs11275996-?		4E-8	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
587	chr6_mann_hap4	355657	355657	rs11275996	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs11275996-?		7E-9	(Superior corona radiata)			NR [8955960] (imputed)	N
587	chr6_mann_hap4	361039	361040	rs3129788	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p22.1	OR2B3P, OR2J3	rs3129788-A	0.217	7E-19				Illumina [118177]	N
587	chr6_mann_hap4	365951	365952	rs115166140	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p22.1	NR	rs115166140-?	NR	1E-9		0.1623	[0.11-0.21] unit increase	Illumina [at least 560000] (imputed)	N
587	chr6_mann_hap4	368392	368393	rs4463283	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p22.1	OR2B3, OR2J3	rs4463283-A	0.06	1E-6	(EA)	2.61	[1.74-3.90]	Illumina [up to 547389]	N
587	chr6_mann_hap4	378493	378494	rs3129178	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p22.1	NR	rs3129178-A	0.0951	6E-9	(EA)	0.0669	[0.044-0.089] unit decrease	Illumina [~ 11800000] (imputed)	N
587	chr6_mann_hap4	384562	384563	rs3129106	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p22.1	NR	rs3129106-?	NR	7E-6		0.0757	[0.043-0.109] unit decrease	Illumina [at least 560000] (imputed)	N
587	chr6_mann_hap4	385623	385624	rs115328582	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	OR2J3	rs115328582-G	NR	4E-14		0.033147	[0.025-0.042] unit decrease	Affymetrix [321016] (imputed)	N
587	chr6_mann_hap4	387633	387634	rs3129109	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	6p22.1	OR2J3	rs3129109-T	0.39	2E-17		0.032	[NR] unit decrease	Affymetrix, Illumina [2834208] (imputed)	N
588	chr6_mann_hap4	406260	406261	rs3129119	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129119-?		3E-11	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
588	chr6_mann_hap4	406260	406261	rs3129119	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129119-?		2E-8	(Superior corona radiata)			NR [8955960] (imputed)	N
588	chr6_mann_hap4	406260	406261	rs3129119	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129119-?		2E-11	(Superior corona radiata)			NR [8955960] (imputed)	N
588	chr6_mann_hap4	406260	406261	rs3129119	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129119-?		1E-9	(Retrolenticular part of internal capsule)			NR [8955960] (imputed)	N
588	chr6_mann_hap4	415177	415178	rs3129120	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Major depressive disorder (lifetime)	16,301 British ancestry cases, 50,870 British ancestry controls	NA	6p22.1	NR	rs3129120-?	NR	4E-7		1.1049724	[1.06-1.15]	NR [5276842] (imputed)	N
588	chr6_mann_hap4	415177	415178	rs3129120	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Help-seeking from a psychiatrist	36,286 British ancestry cases, 297,126 British ancestry controls	NA	6p22.1	NR	rs3129120-T	0.876	1E-10		1.081081	NR	NR [5276842] (imputed)	N
588	chr6_mann_hap4	422148	422149	rs3130725	27668658	Iotchkova V	2016-11-01	Nat Genet	Discovery and refinement of genetic loci associated with cardiometabolic risk using dense imputation maps.	Cardiometabolic and hematological traits	up to 35,981 European ancestry individuals	up to 102,505 European ancestry individuals	6p22.1	ZNF311	rs3130725-G		3E-26	(WBC)	0.008	[0.006-0.01] unit decrease	Affymetrix, Illumina [17000000] (imputed)	N
588	chr6_mann_hap4	429900	429901	rs62405961	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	OR2J2	rs62405961-A	NR	2E-8		0.0707669	[0.046-0.095] unit decrease	Affymetrix [321016] (imputed)	N
588	chr6_mann_hap4	433681	433682	rs3129137	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129137-?		3E-8	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
588	chr6_mann_hap4	437047	437048	rs4947263	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p22.1	NR	rs4947263-T	0.1178	3E-12		0.0127	[0.0092-0.0162] unit decrease	NR [7666894] (imputed)	N
588	chr6_mann_hap4	439202	439207	rs369812099	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	6p22.1		rs369812099-T	NR	3E-8		0.0145	[0.0094-0.0196] unit increase	Affymetrix, Illumina [20535873] (imputed)	N
588	chr6_mann_hap4	441720	441721	rs3129151	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	NR	rs3129151-?	NR	7E-8		5.388	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
588	chr6_mann_hap4	442354	442355	rs3130740	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3130740-?		4E-9	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
588	chr6_mann_hap4	445148	445149	rs3129157	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p22.1	OR2J2	rs3129157-A		3E-33		0.068	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
588	chr6_mann_hap4	447949	447950	rs9257566	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	6p22.1	NR	rs9257566-?	NR	7E-30		1.2277772	[1.19-1.26]	Affymetrix, Illumina [12447948] (imputed)	N
588	chr6_mann_hap4	449040	449041	rs9295795	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	6p22.1		rs9295795-T	0.94311	2E-8		0.026	[0.016-0.036] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
588	chr6_mann_hap4	451122	451123	rs186983332	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p22.1	NR	rs186983332-?	NR	7E-6		0.2003	[0.11-0.29] unit decrease	Illumina [at least 560000] (imputed)	N
588	chr6_mann_hap4	451822	451823	rs114503016	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p22.1		rs114503016-C	0.986	4E-13				Affymetrix [10369434] (imputed)	N
588	chr6_mann_hap4	451822	451823	rs114503016	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p22.1		rs114503016-C	0.986	3E-16				Affymetrix [10369434] (imputed)	N
588	chr6_mann_hap4	452859	452860	rs3116816	32595297	Kweon K	2018-04-01	Soa Chongsonyon Chongsin Uihak	Genome-Wide Analysis Reveals Four Novel Loci for Attention-Deficit Hyperactivity Disorder in Korean Youths.	Attention deficit hyperactivity disorder (inattention symptoms)	27 Korean ancestry child sibling pairs	NA	6p22.1	OR2J2, OR14J1	rs3116816-A	0.398	2E-7				Affymetrix [432921]	N
588	chr6_mann_hap4	456576	456577	rs3130746	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p22.1	NR	rs3130746-?	NR	3E-6		0.1783	[0.1-0.25] unit increase	Illumina [at least 560000] (imputed)	N
588	chr6_mann_hap4	459170	459171	rs3129171	32358547	Persyn E	2020-05-01	Nat Commun	Genome-wide association study of MRI markers of cerebral small vessel disease in 42,310 participants.	White matter integrity (fractional anisotropy)	17,663 European ancestry individuals	NA	6p22.1	ZFP57a, OR2J2, OR2H4P, XXbac-BPG308J9.3	rs3129171-A	0.242404	2E-9		0.294752	[0.2-0.39] unit increase	Affymetrix [NR] (imputed)	N
588	chr6_mann_hap4	459170	459171	rs3129171	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129171-?		3E-9	(Retrolenticular part of internal capsule)			NR [8955960] (imputed)	N
588	chr6_mann_hap4	459170	459171	rs3129171	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129171-?		3E-9	(Anterior corona radiata)			NR [8955960] (imputed)	N
588	chr6_mann_hap4	459170	459171	rs3129171	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129171-?		2E-11	(Average across all tracts)			NR [8955960] (imputed)	N
588	chr6_mann_hap4	459170	459171	rs3129171	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129171-?		9E-9	(Anterior corona radiata)			NR [8955960] (imputed)	N
588	chr6_mann_hap4	459170	459171	rs3129171	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129171-?		4E-10	(Average across all tracts)			NR [8955960] (imputed)	N
588	chr6_mann_hap4	459170	459171	rs3129171	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129171-?		2E-8	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
588	chr6_mann_hap4	462004	462005	rs185008237	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	6p22.1	NR	rs185008237-?	NR	4E-6		0.0077326	[0.0045-0.011] unit increase	Affymetrix [805426] (imputed)	N
588	chr6_mann_hap4	468480	468481	rs114224598	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling miserable	376,097 European ancestry individuals	NA	6p22.1	NR	rs114224598-A	0.0456381	3E-8		5.52	z score increase	NR [10847151] (imputed)	N
588	chr6_mann_hap4	468480	468481	rs114224598	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p22.1	NR	rs114224598-?	NR	6E-9		0.175	[0.12-0.23] unit decrease	Illumina [at least 560000] (imputed)	N
588	chr6_mann_hap4	483503	483504	rs139598127	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p22.1	NR	rs139598127-A	0.01045	2E-8	(SBDS)	0.06239	NR unit increase	Illumina [1671387] (imputed)	N
588	chr6_mann_hap4	484162	484163	rs9257616	24047820	St Pourcain B	2013-09-18	Mol Autism	Common variation contributes to the genetic architecture of social communication traits.	Social communication problems	5,584 European ancestry children	1,364 European ancestry children	6p22.1	OR2J2, TRIM27, ZNF311, OR2W1, OR2B3, LOC651503, OR214J1, OR5V1, OR12D3, OR2J3	rs9257616-G	0.56	3E-7		0.093	[0.058-0.128] unit increase	Illumina [~ 2500000] (imputed)	N
588	chr6_mann_hap4	509695	509696	rs3117342	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Cognitive traits (MTAG)	331,679 British ancestry individuals	NA	6p22.1		rs3117342-?	NR	2E-12				NR [7857346] (imputed)	N
588	chr6_mann_hap4	510121	510122	rs3130820	29483656	Pardinas AF	2018-02-26	Nat Genet	Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.	Schizophrenia	40,675 European ancestry cases, 64,643 European ancestry controls	1,651 European ancestry cases, 4,111 cases, 142,717 European ancestry controls, 11,507 controls	6p22.1	xMHC	rs3130820-?	NR	2E-44		1.281	[1.25-1.32]	Illumina [8000000] (imputed)	N
588	chr6_mann_hap4	514008	514009	rs3117340	30271922	Clifton EAD	2018-05-03	Commun Biol	Genome-wide association study for risk taking propensity indicates shared pathways with body mass index.	Smoking status (ever vs never smokers)	207,229 European ancestry ever smoker cases, 243,177 European ancestry never smoker controls	NA	6p22.1	NR	rs3117340-G	0.622344	9E-7		0.0051953	[0.0031-0.0073] unit increase	Affymetrix [7736308] (imputed)	N
588	chr6_mann_hap4	514008	514009	rs3117340	30271922	Clifton EAD	2018-05-03	Commun Biol	Genome-wide association study for risk taking propensity indicates shared pathways with body mass index.	Self-reported risk-taking behaviour	113,882 European ancestry cases, 322,354 European ancestry controls	NA	6p22.1	OR14J1	rs3117340-G	0.62	7E-9		1.024	[1.016-1.033]	Affymetrix [7736308] (imputed)	N
588	chr6_mann_hap4	514008	514009	rs3117340	30181555	Strawbridge RJ	2018-09-04	Transl Psychiatry	Genetics of self-reported risk-taking behaviour, trans-ethnic consistency and relevance to brain gene expression.	Self-reported risk-taking behaviour	83,677 British ancestry cases, 244,662 British ancestry controls	2,764 South Asian ancestry cases, 3,139 African Caribbean ancestry cases, 16,169 European ancestry cases, 3,866 mixed ancestry cases, 4,267 South Asian ancestry controls, 4,341 African Caribbean ancestry controls, 31,814 European ancestry controls, 5,988 mixed ancestry controls	6p22.1	NR	rs3117340-T	0.38	1E-8		0.03	[0.02-0.04] unit decrease	Affymetrix [NR] (imputed)	N
588	chr6_mann_hap4	516047	516048	rs113711385	32227112	Lee MA	2020-03-30	Hum Mol Genet	Common variation at 16p11.2 is associated with glycosuria in pregnancy: Findings from a genome-wide association study in European women.	Glycosuria in pregnancy (offspring genotype effect)	747 European ancestry cases, 2,991 European ancestry controls	NA	6p22.1	NR	rs113711385-C	0.018433461	2E-9		3.6226652	[3.201361247-4.043969167]	Illumina [9873828] (imputed)	N
588	chr6_mann_hap4	520926	520927	rs3117334	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	6p22.1	NR	rs3117334-T	0.501	7E-9		0.00785988	[0.0052-0.0105] unit increase	NR [~ 9732723] (imputed)	N
589	chr6_mann_hap4	526909	526910	rs3130825	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p22.1		rs3130825-?	NR	2E-9		0.0208387	[0.015-0.027] unit decrease	Affymetrix [20259828] (imputed)	N
589	chr6_mann_hap4	527327	527328	rs149016863	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs149016863-?		3E-6		1.74	[1.38-2.20]	Illumina [7645193] (imputed)	N
589	chr6_mann_hap4	528441	528442	rs149702363	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma and major depressive disorder	46,802 European ancestry asthma cases, 59,851 European ancestry major depressive disorder cases, 460,635 European ancestry controls	NA	6p22.1	OR2H1, OR5V1, OR10C1, OR11A1, OR12D2, OR12D3, OR14J1	rs149702363-?	NR	4E-10				Affymetrix [up to 13554551] (imputed)	N
589	chr6_mann_hap4	533545	533546	rs566858049	30181555	Strawbridge RJ	2018-09-04	Transl Psychiatry	Genetics of self-reported risk-taking behaviour, trans-ethnic consistency and relevance to brain gene expression.	Self-reported risk-taking behaviour	83,677 British ancestry cases, 244,662 British ancestry controls	2,764 South Asian ancestry cases, 3,139 African Caribbean ancestry cases, 16,169 European ancestry cases, 3,866 mixed ancestry cases, 4,267 South Asian ancestry controls, 4,341 African Caribbean ancestry controls, 31,814 European ancestry controls, 5,988 mixed ancestry controls	6p22.1	HLA	rs566858049-T	0.6	7E-9		0.031	[0.021-0.041] unit increase	Affymetrix [NR] (imputed)	N
589	chr6_mann_hap4	547635	547636	rs144447022	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	6p22.1		rs144447022-?	NR	4E-9				NR [NR]	N
589	chr6_mann_hap4	547635	547636	rs144447022	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	67,764 individuals	NA	6p22.1	NR	rs144447022-?		9E-28				NR [8377093]	N
589	chr6_mann_hap4	547635	547636	rs144447022	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms (MTAG)	955,012 individuals	NA	6p22.1	NR	rs144447022-?		3E-12				NR [520857]	N
589	chr6_mann_hap4	547635	547636	rs144447022	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Bipolar disorder (MTAG)	65,682 individuals	NA	6p22.1	NR	rs144447022-?		7E-20				NR [520857]	N
589	chr6_mann_hap4	547635	547636	rs144447022	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	6p22.1	XXbac-BPG308J9.3	rs144447022-T	NR	1E-13		0.036134973	[0.027-0.046] unit increase	Affymetrix [NR]	N
589	chr6_mann_hap4	547635	547636	rs144447022	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	6p22.1	NR	rs144447022-G	NR	2E-28		1.25	[NR]	Illumina [7158791] (imputed)	N
589	chr6_mann_hap4	551564	551565	rs3130834	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p22.1	NR	rs3130834-C	0.0955	5E-9	(EA)	0.0672	[0.045-0.09] unit decrease	Illumina [~ 11800000] (imputed)	N
589	chr6_mann_hap4	551980	551980	rs5875188	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p22.1	OR2J2, OR14J1	rs5875188-?	0.06	7E-6	(EA)	2.52	[1.66-3.83]	Illumina [up to 547389]	N
589	chr6_mann_hap4	556173	556174	rs116466121	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	6p22.1	Intergenic	rs116466121-A	0.8753	8E-9	(MTAG)	0.0156	[0.01-0.021] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
589	chr6_mann_hap4	556173	556174	rs116466121	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	6p22.1	Intergenic	rs116466121-A	0.8759	2E-12	(MTAG)	0.0177	[0.013-0.023] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
589	chr6_mann_hap4	558397	558398	rs9257681	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p22.1	NR	rs9257681-G	0.1151	2E-12		0.0131	[0.0094-0.0168] unit decrease	NR [7666894] (imputed)	N
589	chr6_mann_hap4	559476	559476	rs6149499	30093612	O'Mara TA	2018-08-09	Nat Commun	Identification of nine new susceptibility loci for endometrial cancer.	Endometrial cancer (endometrioid histology)	8,758 European ancestry cases, 46,126 European ancestry controls	NA	6p22.1	LOC101929006, LOC105375005	rs6149499-G	0.870856	6E-7		1.16	[1.09-1.23]	Affymetrix, Illumina [~ 11700000] (imputed)	N
589	chr6_mann_hap4	559854	559855	rs1884123	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	6p22.1	OR14J1	rs1884123-A	0.3614	3E-8		0.011205866	[0.0072-0.0152] unit decrease	Illumina [9339358] (imputed)	N
589	chr6_mann_hap4	561401	561402	rs1033568	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA		NR	rs1033568-A	0.429	1E-6		1.081	[1.05-1.11]	Illumina [11270530] (imputed)	N
589	chr6_mann_hap4	563865	563866	rs3117425	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	6p22.1	NR	rs3117425-T	NR	2E-8		0.02019	[0.013-0.027] unit decrease	Affymetrix [10847151] (imputed)	N
589	chr6_mann_hap4	563865	563866	rs3117425	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling nervous	373,121 European ancestry individuals	NA	6p22.1	ZNF391	rs3117425-T	0.119369	5E-8		5.47	z score decrease	NR [10847151] (imputed)	N
589	chr6_mann_hap4	575456	575457	rs3117426	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3117426-?		4E-10	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
589	chr6_mann_hap4	575456	575457	rs3117426	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3117426-?		2E-8	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
589	chr6_mann_hap4	575456	575457	rs3117426	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3117426-?		1E-9	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
589	chr6_mann_hap4	575456	575457	rs3117426	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3117426-?		4E-8	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
589	chr6_mann_hap4	577580	577581	rs3117427	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Receptor for advanced glycosylation end products levels	21,758 European ancestry individuals	9,173 individuals	6p22.1		rs3117427-T	0.9	2E-11		0.0988	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
589	chr6_mann_hap4	578672	578673	rs61735224	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p22.1	NR	rs61735224-T	0.01045	2E-8	(SBDS)	0.06239	NR unit increase	Illumina [1671387] (imputed)	N
589	chr6_mann_hap4	587117	587118	rs3129682	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p22.1	GABBR1, OR12D3, XXbac-BPG308K3.5, TRIM27, AL662791.1, OR2AD1P, OR2P1P, OR2B3, XXbac-BCX196D17.5, OR2N1P, OR2H4P, OR2B4P, XXbac-BPG308K3.6, RPL13P, ZNF90P2, HCG14, RNU6-930P, LINC01556, KRT18P1, RN7SL471P, HCG15, HCG16, ZNF311, XXbac-BPG258E24.10, OR2W1, SAR1P1, OR2J3, OR2J4P, OR2J2, AL645937.1, XXbac-BPG308J9.3, OR2U2P, OR14J1, OR5V1, OR10C1, OR11A1, XXbac-BPG13B8.11, OR2H1, UBDP1, MAS1LP1, MAS1L, RPS17P1, XXbac-BPG13B8.10, OR2I1P, UBD	rs3129682-T	0.07742915	1E-19	(EA, MHC class I polypeptide-related sequence B)	0.7369	[0.58-0.89] unit decrease	Affymetrix [509946]	N
589	chr6_mann_hap4	587406	587406	rs201452814	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-17 levels	7,760 Finnish ancestry individuals	NA	6p22.1	NR	rs201452814-GT		4E-6		0.2398	[0.14-0.34] SD units increase	NR [10700000] (imputed)	N
589	chr6_mann_hap4	587406	587406	rs201452814	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Fibroblast growth factor basic levels	7,565 Finnish ancestry individuals	NA	6p22.1	NR	rs201452814-GT		4E-6		0.242	[0.14-0.34] SD units increase	NR [10700000] (imputed)	N
589	chr6_mann_hap4	603719	603720	rs146977025	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p22.1	NR	rs146977025-T	0.01045	2E-8	(SBDS)	0.06239	NR unit increase	Illumina [1671387] (imputed)	N
589	chr6_mann_hap4	605475	605476	rs6903989	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	6p22.1	NR	rs6903989-C		2E-8		0.07	[0.05-0.09] unit increase	NR [NR]	N
589	chr6_mann_hap4	610101	610102	rs9257745	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	DDX6P1	rs9257745-T	NR	8E-10		0.0256365	[0.017-0.034] unit decrease	Affymetrix [321016] (imputed)	N
589	chr6_mann_hap4	618410	618411	rs7745768	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	6p22.1	NR	rs7745768-?	NR	8E-7		0.131782	[0.08-0.184] unit increase	NR [13958389] (imputed)	N
589	chr6_mann_hap4	620623	620624	rs148466862	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	6p22.1		rs148466862-?	NR	5E-12		0.0507	unit increase	NR [NR]	N
589	chr6_mann_hap4	620623	620624	rs148466862	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Subjective well-being (MTAG)	388,538 European ancestry individuals	NA	6p22.1	NR	rs148466862-T	0.0411	8E-12		0.0324	[0.023-0.042] unit decrease	Illumina [NR] (imputed)	N
589	chr6_mann_hap4	620623	620624	rs148466862	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Neuroticism (MTAG)	168,105 European ancestry individuals	NA	6p22.1	NR	rs148466862-T	0.0463	5E-10		0.0438	[0.03-0.058] unit increase	Illumina [NR] (imputed)	N
589	chr6_mann_hap4	620623	620624	rs148466862	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms (MTAG)	354,862 European ancestry individuals	NA	6p22.1	NR	rs148466862-T	0.0425	1E-10		0.0343	[0.024-0.045] unit increase	Illumina [NR] (imputed)	N
589	chr6_mann_hap4	626312	626313	rs9357080	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6p22.1	NR	rs9357080-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
589	chr6_mann_hap4	627101	627102	rs7761746	30108155	Hebbar P	2018-08-14	J Lipid Res	Genome-wide association study identifies novel recessive genetic variants for high TGs in an Arab population.	Triglyceride levels	1,353 Kuwaiti ancestry individuals	1,176 Kuwaiti ancestry individuals	6p22.1	OR5V1	rs7761746-A	NR	1E-9		6.066	z-score increase	Illumina [632375]	N
589	chr6_mann_hap4	630489	630490	rs9257774	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	6p22.1		rs9257774-?	NR	5E-8				Affymetrix [NR] (imputed)	N
589	chr6_mann_hap4	630489	630490	rs9257774	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p22.1		rs9257774-G	0.499	5E-24				Affymetrix [10369434] (imputed)	N
589	chr6_mann_hap4	632280	632281	rs7754402	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs7754402-?		2E-8	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
589	chr6_mann_hap4	635262	635263	rs2207699	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6p22.1	OR5V1	rs2207699-T	NR	2E-10		0.0197089	[0.014-0.026] unit increase	Affymetrix [321114] (imputed)	N
589	chr6_mann_hap4	638791	638792	rs9257794	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6p22.1		rs9257794-?	NR	7E-6		1.05596	[1.03-1.08]	NR [685523]	N
589	chr6_mann_hap4	638791	638792	rs9257794	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	OR5V1	rs9257794-T	NR	1E-10		0.0227562	[0.016-0.03] unit decrease	Affymetrix [323858] (imputed)	N
589	chr6_mann_hap4	638791	638792	rs9257794	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	OR5V1	rs9257794-T	NR	9E-11		0.022922	[0.016-0.03] unit decrease	Affymetrix [127266] (imputed)	N
589	chr6_mann_hap4	638791	638792	rs9257794	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6p22.1	OR5V1	rs9257794-T	NR	3E-9		0.0207731	[0.014-0.028] unit decrease	Affymetrix [321114] (imputed)	N
589	chr6_mann_hap4	640205	640206	rs3930883	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p22.1		rs3930883-G	0.357	7E-41				Affymetrix [10369434] (imputed)	N
589	chr6_mann_hap4	643875	643876	rs9257800	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Pork consumption	335,576 European ancestry individuals	NA	6p22.1	LRRC16A, SCGN, SLC17A4, SLC17A1	rs9257800-?	NR	7E-11		0.0040428	[-0.00326-0.01135] unit decrease	Affymetrix [25921788] (imputed)	N
589	chr6_mann_hap4	643875	643876	rs9257800	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Oily fish consumption	335,576 European ancestry individuals	NA	6p22.1	LRRC16A, SCGN, SLC17A4, SLC17A1, SLC17A3, SLC17A2	rs9257800-?	NR	7E-11		0.0241753	[0.017-0.031] unit increase	Affymetrix [25921788] (imputed)	N
589	chr6_mann_hap4	644139	644140	rs7772982	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	OR5V1	rs7772982-C	NR	7E-9		0.0217566	[0.014-0.029] unit decrease	Affymetrix [321016] (imputed)	N
589	chr6_mann_hap4	645907	645908	rs3749971	33909500	Moll M	2021-04-28	Am J Physiol Lung Cell Mol Physiol	A Systematic Analysis of Protein-altering Exonic Variants in Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease	up to 31,465 European ancestry cases, up to 203,688 European ancestry controls, up to 1,413 African ancestry cases, up to 6,080 African ancestry controls, up to 287 East Asian ancestry cases, up to 7,484 East Asian ancestry controls, up to 61 Hispanic cases, up to 613 Hispanic controls	NA	6p22.1	OR12D3	rs3749971-A	0.12	3E-11		1.11	[1.08 -1.14]	Illumina [at least 109036]	N
589	chr6_mann_hap4	645907	645908	rs3749971	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p22.1	OR12D3	rs3749971-A		2E-38		0.045	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
589	chr6_mann_hap4	645907	645908	rs3749971	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	6p22.1	NR	rs3749971-A	NR	3E-9		5.929	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
589	chr6_mann_hap4	646487	646488	rs9257802	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	OR5V1	rs9257802-T	NR	6E-12		0.026998	[0.019-0.035] unit decrease	Affymetrix [323858] (imputed)	N
589	chr6_mann_hap4	646487	646488	rs9257802	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	OR5V1	rs9257802-T	NR	2E-11		0.0261971	[0.019-0.034] unit decrease	Affymetrix [127266] (imputed)	N
589	chr6_mann_hap4	646487	646488	rs9257802	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p22.1	OR5V1	rs9257802-T	NR	7E-9		0.0225586	[0.015-0.03] unit decrease	Affymetrix [323858] (imputed)	N
589	chr6_mann_hap4	646487	646488	rs9257802	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	6p22.1	NR	rs9257802-?		3E-8	(Anterior corona radiata)			NR [8955960] (imputed)	N
589	chr6_mann_hap4	646487	646488	rs9257802	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	OR5V1	rs9257802-T	NR	7E-11		6.531	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
589	chr6_mann_hap4	649354	649355	rs238883	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p22.1	OR5V1	rs238883-G	NR	7E-10		0.0202353	[0.014-0.027] unit decrease	Affymetrix [323123] (imputed)	N
589	chr6_mann_hap4	649354	649355	rs238883	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Non-Hodgkin's lymphoma	2,400 European ancestry cases, 410,350 European ancestry controls	NA	6p22.1		rs238883-A	NR	3E-7		1.177995	NR	Affymetrix [7846216] (imputed)	N
589	chr6_mann_hap4	649354	649355	rs238883	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p22.1	OR5V1	rs238883-A	0.6771	1E-7		0.0371	[0.023-0.051] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
589	chr6_mann_hap4	654386	654387	rs576800986	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	6p22.1	OR5V1	rs576800986-A	0.0016	8E-6		0.994	[0.56-1.43] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
589	chr6_mann_hap4	654907	654908	rs9378134	23393555	Jensen RA	2013-02-05	PLoS One	Genome-wide association study of retinopathy in individuals without diabetes.	Retinopathy in non-diabetics	19,411 European ancestry individuals	NA	6p22.1	OR12D3	rs9378134-A	0.04	3E-6		0.49	[0.29-0.69] unit increase	Illumina [2675979] (imputed)	N
590	chr6_mann_hap4	658243	658244	rs238869	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	OR5V1	rs238869-C	NR	4E-8		0.0177413	[0.011-0.024] unit decrease	Affymetrix [323858] (imputed)	N
590	chr6_mann_hap4	658243	658244	rs238869	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	OR5V1	rs238869-C	NR	2E-8		0.0181435	[0.012-0.024] unit decrease	Affymetrix [127266] (imputed)	N
590	chr6_mann_hap4	658243	658244	rs238869	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6p22.1	OR5V1	rs238869-C	NR	2E-9		0.0190121	[0.013-0.025] unit decrease	Affymetrix [321114] (imputed)	N
590	chr6_mann_hap4	658243	658244	rs238869	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	6p22.1	NR	rs238869-C	0.3771	3E-8		1.0341262	[1.02-1.05]	Affymetrix, Illumina [NR] (imputed)	N
590	chr6_mann_hap4	658278	658279	rs3094549	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	OR5V1	rs3094549-C	NR	9E-18		0.0266542	[0.021-0.033] unit decrease	Affymetrix [321016] (imputed)	N
590	chr6_mann_hap4	658278	658279	rs3094549	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p22.1	OR5V1	rs3094549-C	NR	3E-10		0.0212798	[0.015-0.028] unit decrease	Affymetrix [323123] (imputed)	N
590	chr6_mann_hap4	658332	658333	rs3094548	21946350	Soler Artigas M	2011-09-25	Nat Genet	Genome-wide association and large-scale follow up identifies 16 new loci influencing lung function.	Pulmonary function	48,201 European ancestry individuals	46,411 European ancestry individuals	6p22.1	OR12D2	rs3094548-G	NR	1E-7	(FEV1)	0.029	[0.019-0.039] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
590	chr6_mann_hap4	658348	658350	rs34671475	32227112	Lee MA	2020-03-30	Hum Mol Genet	Common variation at 16p11.2 is associated with glycosuria in pregnancy: Findings from a genome-wide association study in European women.	Glycosuria in pregnancy (offspring genotype effect)	747 European ancestry cases, 2,991 European ancestry controls	NA	6p22.1	NR	rs34671475-C	0.03003544	3E-8		2.608679	[2.269056177-2.948302017]	Illumina [9873828] (imputed)	N
590	chr6_mann_hap4	658407	658408	rs74294664	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	150,266 East Asian ancestry individuals	NA	6p22.1		rs74294664-A	0.075018	4E-26		0.0570823	[0.046-0.068] unit increase	Illumina [13478778] (imputed)	N
590	chr6_mann_hap4	659461	659462	rs9257809	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p22.1	NR	rs9257809-G	0.1004	3E-8	(EA)	0.0627	[0.041-0.085] unit decrease	Illumina [~ 11800000] (imputed)	N
590	chr6_mann_hap4	659461	659462	rs9257809	27527254	Gharahkhani P	2016-08-12	Lancet Oncol	Genome-wide association studies in oesophageal adenocarcinoma and Barrett's oesophagus: a large-scale meta-analysis.	Barrett's esophagus  or Esophageal adenocarcinoma	6,167 European ancestry Barrett's oesophagus cases, 4,112 European ancestry esophageal adenocarcinoma cases, 17,159 European ancestry controls	NA	6p22.1	MHC	rs9257809-A		6E-9		1.23	[1.14-1.31]	Illumina [11951684] (imputed)	N
590	chr6_mann_hap4	659461	659462	rs9257809	27527254	Gharahkhani P	2016-08-12	Lancet Oncol	Genome-wide association studies in oesophageal adenocarcinoma and Barrett's oesophagus: a large-scale meta-analysis.	Barrett's esophagus	6,167 European ancestry cases, 17,159 European ancestry controls	NA	6p22.1	MHC	rs9257809-A		6E-9		1.2634	[1.18-1.34]	Illumina [11942825] (imputed)	N
590	chr6_mann_hap4	659461	659462	rs9257809	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p22.1	OR12D3, OR12D2	rs9257809-G	0.233	1E-20				Illumina [118177]	N
590	chr6_mann_hap4	659461	659462	rs9257809	22961001	Su Z	2012-09-09	Nat Genet	Common variants at the MHC locus and at chromosome 16q24.1 predispose to Barrett's esophagus.	Barrett's esophagus	Up to 1,852 European ancestry cases, 5,172 European ancestry controls	5,986 European ancestry cases, 12,825 European ancestry controls	6p22.1	OR2D12, OR2D13, MHC	rs9257809-A	0.87	4E-9		1.21	[1.13-1.28]	Illumina [521744]	N
590	chr6_mann_hap4	659717	659718	rs379157	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6p22.1	OR5V1	rs379157-G	NR	5E-8		0.0168887	[0.011-0.023] unit decrease	Affymetrix [321114] (imputed)	N
590	chr6_mann_hap4	659717	659718	rs379157	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	6p22.1	NR	rs379157-?	NR	2E-9	(MIC-A)	0.426671	[0.29-0.57] unit decrease	Illumina [11901634] (imputed)	N
590	chr6_mann_hap4	668410	668411	rs2073149	35215271	Almandil NB	2022-01-27	Pharmaceuticals (Basel)	Integration of Transcriptome and Exome Genotyping Identifies Significant Variants with Autism Spectrum Disorder.	Autism spectrum disorder	70 Arab ancestry cases, 132 Arab ancestry controls	NA	6p22.1	NA	rs2073149-A	0.5795	9E-9		0.2367	[0.143-0.3918]	Illumina [243345]	N
590	chr6_mann_hap4	669093	669094	rs7775217	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Treatment or medication use - levothyroxine sodium (UKB data field 20003_1141191044)	18,688 European ancestry cases, 437,588 European ancestry controls	NA	6p22.1		rs7775217-A	0.007711	3E-13		0.46	[0.33-0.59] unit increase	NR [11842647] (imputed)	N
590	chr6_mann_hap4	675304	675305	rs429479	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	6p22.1	OR12D2	rs429479-A	0.9041	2E-12		0.0471	[0.034-0.06] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
590	chr6_mann_hap4	675304	675305	rs429479	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	OR5V1	rs429479-A	NR	5E-15		7.818	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
590	chr6_mann_hap4	679318	679318	rs199997067	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mumps	31,227 European ancestry cases, 54,153 European ancestry controls	NA	6p22.1	NR	rs199997067-?	NR	5E-7		0.267	[0.16-0.37] unit decrease	Illumina [at least 560000] (imputed)	N
590	chr6_mann_hap4	680648	680649	rs389931	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure in major depressive disorder-negative individuals	10,701 European ancestry cases, 39,677 European ancestry controls	NA	6p22.1	NR	rs389931-T	0.9064421	7E-6		1.1273957	[1.07-1.18]	Affymetrix [7791636] (imputed)	N
590	chr6_mann_hap4	689956	689957	rs202217993	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Gynecologic disease	7,975 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs202217993-?		1E-8		1.18	[1.11-1.25]	Illumina [7645193] (imputed)	N
590	chr6_mann_hap4	689956	689957	rs202217993	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Gynecologic disease	7,315 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs202217993-?		2E-9				Illumina [7645193] (imputed)	N
590	chr6_mann_hap4	689983	689984	rs16894878	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	6p22.1	OR12D1P, OR11A1	rs16894878-A	0.001	1E-6		34.08	[3.52-329.69]	Illumina [1556551]	N
590	chr6_mann_hap4	699851	699852	rs3128851	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	OR5V1, OR11A1	rs3128851-T	NR	9E-12		0.0207103	[0.015-0.027] unit decrease	Affymetrix [321016] (imputed)	N
590	chr6_mann_hap4	701915	701916	rs3117191	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	6p22.1	Intergenic	rs3117191-T	NR	2E-6		0.022413	[0.013-0.032] unit decrease	Illumina [13520550] (imputed)	N
590	chr6_mann_hap4	708865	708866	rs55740552	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p22.1	NR	rs55740552-?	NR	1E-10		0.1637	[0.11-0.21] unit decrease	Illumina [at least 560000] (imputed)	N
590	chr6_mann_hap4	711067	711068	rs17177632	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	6p22.1		rs17177632-?	NR	5E-8				Affymetrix [NR] (imputed)	N
590	chr6_mann_hap4	711067	711068	rs17177632	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p22.1		rs17177632-A	0.988	2E-8				Affymetrix [10369434] (imputed)	N
590	chr6_mann_hap4	715980	715981	rs2023463	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in diabetes	70,762 European ancestry individuals, 20,967 African American individuals	NA	6p22.1	6M1-18	rs2023463-T	0.092	1E-11		1.01	[0.72-1.3] unit decrease	Affymetrix [NR] (imputed)	N
590	chr6_mann_hap4	718441	718442	rs2523443	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p22.1	NR	rs2523443-A	0.1188	1E-12		0.013	[0.0095-0.0165] unit decrease	NR [7666894] (imputed)	N
590	chr6_mann_hap4	735140	735141	rs2143668	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	6p22.1	OR2H1	rs2143668-A	0.8962	1E-7	(EA)	0.0033	[0.0021-0.0045] unit increase	Affymetrix [NR] (imputed)	N
590	chr6_mann_hap4	735140	735141	rs2143668	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	6p22.1	OR2H1	rs2143668-A	0.896	1E-9		0.0033	[0.0021-0.0045] unit increase	Affymetrix [NR] (imputed)	N
590	chr6_mann_hap4	737381	737382	rs4713226	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	UBDP1	rs4713226-A	NR	5E-10		0.0303439	[0.021-0.04] unit decrease	Affymetrix [321016] (imputed)	N
590	chr6_mann_hap4	737381	737382	rs4713226	22610502	Kennedy RB	2012-05-19	Hum Genet	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IFN-alpha)	Up to 512 European ancestry individuals, up to 199 African American individuals	NA	6p22.1	OR2H1	rs4713226-A		2E-8	(AA)			Illumina [NR]	N
590	chr6_mann_hap4	745942	745943	rs77454196	33002439	Jin G	2020-10-01	Lancet Oncol	Genetic risk, incident gastric cancer, and healthy lifestyle: a meta-analysis of genome-wide association studies and prospective cohort study.	Gastric cancer	10,254 Han Chinese ancestry cases, 10,914 Han Chinese ancestry controls	NA	6p22.1	NR	rs77454196-A	0.05	3E-6		0.78	NR	Affymetrix, Illumina [6957974] (imputed)	N
590	chr6_mann_hap4	748669	748670	rs72500877	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	349,856 European ancestry individuals, 91,908 East Asian ancestry individuals	NA	6p22.1		rs72500877-T	NR	2E-9		0.0296	[0.02-0.039] unit increase	Affymetrix, Illumina [20529536] (imputed)	N
590	chr6_mann_hap4	761209	761210	rs1233493	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs1233493-?		1E-8	(Superior corona radiata)			NR [8955960] (imputed)	N
590	chr6_mann_hap4	761209	761210	rs1233493	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs1233493-?		3E-9	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
590	chr6_mann_hap4	761209	761210	rs1233493	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in non-diabetics	152,624 European ancestry individuals, 36,369 African American individuals	NA	6p22.1	MAS1L	rs1233493-A	0.89	9E-9		0.481	[0.32-0.65] unit increase	Affymetrix [NR] (imputed)	N
590	chr6_mann_hap4	764698	764699	rs1233491	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p22.1	MAS1L, LOC729653	rs1233491-C	0.23	1E-20				Illumina [118177]	N
590	chr6_mann_hap4	764698	764699	rs1233491	25827949	Kunz M	2015-05-04	Exp Dermatol	Genome-wide association study identifies new susceptibility loci for cutaneous lupus erythematosus.	Cutaneous lupus erythematosus	151 European ancestry cases, 1,288 European ancestry controls	219 European ancestry cases, 262 European ancestry controls	6p22.1	MAS1L	rs1233491-C	0.088	8E-10		2.2	[1.58-3.08]	Affymetrix [906600]	N
590	chr6_mann_hap4	773175	773176	rs1233485	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p22.1		rs1233485-T	0.731	7E-12				Affymetrix [10369434] (imputed)	N
590	chr6_mann_hap4	773952	773953	rs3131019	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	6p22.1		rs3131019-?	NR	5E-8				Affymetrix [NR] (imputed)	N
590	chr6_mann_hap4	780381	780382	rs1233480	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p22.1	NR	rs1233480-T	0.1095	5E-8	(EA)	0.0586	[0.037-0.08] unit decrease	Illumina [~ 11800000] (imputed)	N
590	chr6_mann_hap4	783191	783192	rs385816	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p22.1	NR	rs385816-?	NR	5E-7		0.0742	[0.045-0.103] unit increase	Illumina [at least 560000] (imputed)	N
591	chr6_mann_hap4	790256	790257	rs2523430	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p22.1		rs2523430-G	0.513	3E-9				Affymetrix [10369434] (imputed)	N
591	chr6_mann_hap4	790942	790943	rs12210150	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	153,512 East Asian ancestry individuals	NA	6p22.1		rs12210150-T	0.038389	1E-12		0.0584816	[0.042-0.075] unit increase	Illumina [13479135] (imputed)	N
591	chr6_mann_hap4	813604	813605	rs362538	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	6p22.1		rs362538-G	0.902	2E-109		0.4	[-0.44--0.36] % decrease	Affymetrix [NR] (imputed)	N
591	chr6_mann_hap4	813604	813605	rs362538	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular hemoglobin	20,714 Amish, White ancestry individuals, 447 Asian ancestry individuals, 11,246 Black individuals, 13,834 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	6p22.1		rs362538-C	NR	3E-10		0.2	[0.14-0.26] unit increase	Illumina [94681438]	N
591	chr6_mann_hap4	818778	818779	rs3094575	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	OR2I1P	rs3094575-T	NR	2E-8		0.0185304	[0.012-0.025] unit decrease	Affymetrix [321016] (imputed)	N
591	chr6_mann_hap4	822826	822827	rs453658	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	121,047 East Asian ancestry individuals	NA	6p22.1	NR	rs453658-G	0.306783	4E-12		0.030549	[0.022-0.039] SD units decrease	Affymetrix, Illumina [16286195] (imputed)	N
591	chr6_mann_hap4	823877	823878	rs16895057	23456168	Hao Y	2013-03-03	Hum Genet	Genome-wide association study in Han Chinese identifies three novel loci for human height.	Height	6,534 Han Chinese ancestry individuals	1,881 Han Chinese ancestry individuals from 637 families	6p22.1	OR2I1P	rs16895057-T	0.95	3E-6		0.153	[0.088-0.218] unit increase	Affymetrix [1532051] (imputed)	N
591	chr6_mann_hap4	824319	824320	rs11724	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	6p22.1		rs11724-G	0.692447	2E-8		0.0220867	[0.014-0.03] unit increase	Illumina [13476299] (imputed)	N
591	chr6_mann_hap4	826677	826678	rs8337	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p22.1	UBD	rs8337-C		1E-19		0.022	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
591	chr6_mann_hap4	829379	829380	rs11970475	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	6p22.1	UBD	rs11970475-A	0.19	2E-24		0.07	[0.054-0.086] unit increase	Affymetrix, Illumina [2704730] (imputed)	N
591	chr6_mann_hap4	833946	833947	rs422878	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	GABBR1	rs422878-T	NR	1E-8		0.0205792	[0.014-0.028] unit decrease	Affymetrix [321016] (imputed)	N
591	chr6_mann_hap4	833946	833947	rs422878	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	6p22.1	UBD, OR2H2	rs422878-C	0.81	1E-8		5.72	z-score increase	Affymetrix [4311822] (imputed)	N
591	chr6_mann_hap4	833976	833977	rs115070292	27922604	Yu H	2016-12-06	Mol Psychiatry	Common variants on 2p16.1, 6p22.1 and 10q24.32 are associated with schizophrenia in Han Chinese population.	Schizophrenia	4,384 Han Chinese ancestry cases and 5,770 Han Chinese ancestry controls	4,339 Han Chinese ancestry cases and 7,043 Han Chinese ancestry controls	6p22.1	GABBR1	rs115070292-?		5E-10		1.3	[1.22-1.38]	Illumina [at least 473583] (imputed)	N
591	chr6_mann_hap4	837613	837614	rs413082	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	GABBR1	rs413082-A	NR	3E-8		0.0199613	[0.013-0.027] unit decrease	Affymetrix [321016] (imputed)	N
591	chr6_mann_hap4	841234	841235	rs142818680	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mumps	31,227 European ancestry cases, 54,153 European ancestry controls	NA	6p22.1	NR	rs142818680-?	NR	7E-12		0.5892	[0.42-0.76] unit decrease	Illumina [at least 560000] (imputed)	N
591	chr6_mann_hap4	842790	842791	rs3025652	31272903	Sunadome H	2019-07-01	Allergol Int	Correlation between eosinophil count, its genetic background and body mass index: The Nagahama Study.	Eosinophil counts	4,650 East Asian ancestry individuals	NA	6p22.1	NR	rs3025652-A	0.23	4E-7		0.1237	NR unit increase	Illumina [103680] (imputed)	N
591	chr6_mann_hap4	849825	849826	rs1233396	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in HDL	115,082 European ancestry individuals	NA	6p22.1		rs1233396-G	0.861673	7E-10		0.0329165	[0.022-0.043] unit increase	NR [11722792] (imputed)	N
591	chr6_mann_hap4	849825	849826	rs1233396	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium HDL	115,082 European ancestry individuals	NA	6p22.1		rs1233396-G	0.861673	3E-9		0.0327783	[0.022-0.044] unit increase	NR [11722792] (imputed)	N
591	chr6_mann_hap4	851115	851116	rs926552	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	6p22.1	NA	rs926552-G		4E-10		0.0184243	[0.013-0.024] unit increase	Illumina [13288253] (imputed)	N
591	chr6_mann_hap4	851115	851116	rs926552	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Major depressive disorder (lifetime)	16,301 British ancestry cases, 50,870 British ancestry controls	NA	6p22.1	NR	rs926552-G	0.86	4E-8		1.1074197	[1.07-1.14]	NR [5276842] (imputed)	N
591	chr6_mann_hap4	851115	851116	rs926552	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking initiation (ever regular vs never regular)	up to 433,216 European ancestry individuals	NA	6p22.1	SNORD32B	rs926552-A	0.134	1E-8		0.0181	[0.012-0.024] unit decrease	Illumina [~ 250000] (imputed)	N
591	chr6_mann_hap4	851115	851116	rs926552	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Diastolic blood pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	154,543 European ancestry individuals, 26,183 South Asian ancestry individuals	6p22.1	SNORD32B	rs926552-T	0.111	7E-8		0.26	[0.16-0.36] unit decrease	Illumina [247039]	N
591	chr6_mann_hap4	852679	852680	rs1233393	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p22.1	NR	rs1233393-G	0.12	3E-7		1.13	[1.08-1.18]	Affymetrix [9886854] (imputed)	N
591	chr6_mann_hap4	852679	852680	rs1233393	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p22.1	NR	rs1233393-G	0.12	2E-11			[NR]	Affymetrix [9886854] (imputed)	N
591	chr6_mann_hap4	852679	852680	rs1233393	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p22.1	NR	rs1233393-G	0.12	2E-9		1.11	[1.07-1.15]	Affymetrix [9886854] (imputed)	N
591	chr6_mann_hap4	852679	852680	rs1233393	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p22.1	NR	rs1233393-G	0.12	3E-11			[NR]	Affymetrix [9886854] (imputed)	N
591	chr6_mann_hap4	852679	852680	rs1233393	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in non-current smokers	16,488 European ancestry cases, 169,688 European ancestry controls	NA	6p22.1	NR	rs1233393-G	0.12	2E-9		1.11	[1.07-1.15]	Affymetrix [9886854] (imputed)	N
591	chr6_mann_hap4	852679	852680	rs1233393	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in never smokers	8,631 European ancestry cases, 120,544 European ancestry controls	NA	6p22.1	NR	rs1233393-G	0.12	2E-7		1.13	[1.08-1.18]	Affymetrix [9886854] (imputed)	N
591	chr6_mann_hap4	852679	852680	rs1233393	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in ever smokers	12,446 European ancestry cases, 59,145 European ancestry controls	NA	6p22.1	NR	rs1233393-G	0.12	3E-6		1.11	[1.06-1.16]	Affymetrix [9886854] (imputed)	N
591	chr6_mann_hap4	852679	852680	rs1233393	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p22.1	NR	rs1233393-G	0.1223	8E-13		0.0129	[0.0094-0.0164] unit decrease	NR [7666894] (imputed)	N
591	chr6_mann_hap4	854442	854443	rs12524535	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Experiencing mood swings	373,733 European ancestry individuals	NA	6p22.1	TRIM27	rs12524535-A	0.0690112	8E-9		5.77	z score decrease	NR [10847151] (imputed)	N
591	chr6_mann_hap4	858804	858805	rs2235698	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6p22.1		rs2235698-?	NR	2E-7		0.935071	[0.91-0.96]	NR [685523]	N
591	chr6_mann_hap4	858804	858805	rs2235698	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	6p22.1	OR2H2	rs2235698-G	0.23	2E-10		6.36	z-score increase	Affymetrix [4312306] (imputed)	N
591	chr6_mann_hap4	863506	863507	rs3095274	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p22.1		rs3095274-A	0.295	1E-10				Affymetrix [10369434] (imputed)	N
591	chr6_mann_hap4	866090	866091	rs17508548	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	6p22.1	NR	rs17508548-?	NR	1E-8		0.02016	[0.013-0.027] unit increase	Affymetrix [10847151] (imputed)	N
591	chr6_mann_hap4	867785	867786	rs56020557	28440896	Yin X	2017-04-25	Am J Med Genet B Neuropsychiatr Genet	Genome-wide meta-analysis identifies a novel susceptibility signal at CACNA2D3 for nicotine dependence.	Nicotine dependence	7,297 European ancestry cases, 5,577 European ancestry controls, 918 European ancestry whole genome sequenced cases, 921 European ancestry whole genome sequenced controls, African American cases, 1,500 African American controls	NA	6p22.1	GABBR1	rs56020557-T		5E-6	(EA)	0.05	[0.03-0.07] unit increase	Illumina [at least 3251541] (imputed)	N
591	chr6_mann_hap4	868396	868397	rs28893517	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	6p22.1	NR	rs28893517-G	NR	5E-10		0.02848	[0.019-0.037] unit increase	Affymetrix [10847151] (imputed)	N
591	chr6_mann_hap4	869105	869106	rs28986304	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	6p22.1	NR	rs28986304-T	NR	3E-9		5.932	z score decrease	Affymetrix [10847151] (imputed)	N
591	chr6_mann_hap4	869105	869106	rs28986304	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	6p22.1	TRIM27	rs28986304-T	0.126444	8E-10		6.14	z score decrease	NR [10847151] (imputed)	N
591	chr6_mann_hap4	870338	870339	rs28986306	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Depression	at least 5,919 European ancestry cases, at least 130,691 European ancestry controls	634,037 European ancestry cases, 1,308,690 European ancestry controls	6p22.1	GABBR1	rs28986306-C	0.0507	2E-9		0.02608803	[0.016-0.036] unit decrease	NR [9417325] (imputed)	N
591	chr6_mann_hap4	872068	872069	rs362517	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	GABBR1	rs362517-A	NR	1E-10		0.0398451	[0.028-0.052] unit decrease	Affymetrix [321016] (imputed)	N
591	chr6_mann_hap4	873339	873340	rs3025642	30172743	Liang X	2018-08-30	Bone	Assessing the genetic correlations between early growth parameters and bone mineral density: A polygenic risk score analysis.	Ulna and radius bone mineral density	2,286 European ancestry individuals	NA	6p22.1	GABBR1	rs3025642-?	NR	8E-7				Affymetrix [753382]	N
591	chr6_mann_hap4	873864	873865	rs2267633	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	6p22.1	intergenic	rs2267633-A	0.87355	1E-9		6.079	z score decrease	Illumina [18485882] (imputed)	N
591	chr6_mann_hap4	878429	878430	rs740883	30804558	Grove J	2019-02-25	Nat Genet	Identification of common genetic risk variants for autism spectrum disorder.	Autism spectrum disorder	18,381 European ancestry cases, 27,969 European ancestry controls	2,119 European ancestry cases, 142,379 European ancestry controls	6p22.1	Intergenic	rs740883-T	0.088	1E-6		1.1160713	[NR]	Illumina [9112387] (imputed)	N
591	chr6_mann_hap4	883009	883010	rs41286287	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	6p22.1	NR	rs41286287-A	NR	2E-8		5.59	z score increase	Affymetrix [10847151] (imputed)	N
591	chr6_mann_hap4	883009	883010	rs41286287	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling miserable	376,097 European ancestry individuals	NA	6p22.1	TRIM27	rs41286287-A	0.0707157	1E-8		5.72	z score increase	NR [10847151] (imputed)	N
591	chr6_mann_hap4	883454	883455	rs29253	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	GABBR1	rs29253-G	NR	3E-12		0.0329464	[0.024-0.042] unit decrease	Affymetrix [321016] (imputed)	N
591	chr6_mann_hap4	897251	897252	rs41291770	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	145,648 East Asian ancestry individuals	NA	6p22.1	NR	rs41291770-T	0.792877	4E-11		0.030339	[0.021-0.039] SD units decrease	Affymetrix, Illumina [16710488] (imputed)	N
591	chr6_mann_hap4	899228	899229	rs143229677	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	6p22.1	GABBR1	rs143229677-A	0.0035	3E-13		0.2309051	[0.17-0.29] unit increase	Affymetrix [~ 2500000] (imputed)	N
591	chr6_mann_hap4	904899	904900	rs62392942	28440896	Yin X	2017-04-25	Am J Med Genet B Neuropsychiatr Genet	Genome-wide meta-analysis identifies a novel susceptibility signal at CACNA2D3 for nicotine dependence.	Nicotine dependence	7,297 European ancestry cases, 5,577 European ancestry controls, 918 European ancestry whole genome sequenced cases, 921 European ancestry whole genome sequenced controls, African American cases, 1,500 African American controls	NA	6p22.1	GABBR1	rs62392942-T		1E-6		0.06	[0.04-0.08] unit decrease	Illumina [at least 3251541] (imputed)	N
591	chr6_mann_hap4	906477	906478	rs111508444	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p22.1	NR	rs111508444-A	0.945	2E-19		1.522	[1.43-1.61]	Illumina [11270530] (imputed)	N
591	chr6_mann_hap4	910010	910011	rs3095267	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine without aura	7,107 European ancestry cases, 69,427 European ancestry controls	NA	6p22.1	intergenic	rs3095267-?	0.81	9E-6		1.12	[1.06-1.18]	Affymetrix, Illumina [~ 2300000] (imputed)	N
591	chr6_mann_hap4	910065	910066	rs3131856	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical thickness (MOSTest)	26,502 European ancestry individuals	NA	6p22.1	RALGPS2, ANGPTL1	rs3131856-?		2E-10				NR [7428630] (imputed)	N
591	chr6_mann_hap4	910065	910066	rs3131856	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	6p22.1	LRRC16A, SCGN, SLC17A4, SLC17A1, SLC17A3, SLC17A2, TRIM38, HIST1H1A, HIST1H3A, HIST1H4A, HIST1H4B, HIST1H3B, HIST1H2AB, HIST1H2BB, HIST1H3C, HIST1H1C, HFE, HIST1H2BC, HIST1H2AC, HIST1H2BD, HIST1H2BE, HIST1H4D, HIST1H3D, HIST1H2AD, HIST1H2BF, HIST1H4E, HIST1H3G, HIST1H2BI, BTN3A2, BTN2A2, BTN3A1, BTN3A3, BTN2A1, BTN1A1, HMGN4, ABT1, ZNF322, HIST1H2BJ, HIST1H2AG, HIST1H2BK, HIST1H4I, HIST1H2AH, POM121L2, ZNF391, ZNF184, HIST1H2BL, HIST1H2AI, HIST1H3H, HIST1H2AJ, HIST1H2BM, HIST1H4J, HIST1H4K, HIST1H2AK, HIST1H2BN, HIST1H2AL, HIST1H1B, HIST1H3I, HIST1H4L, HIST1H3J, HIST1H2AM, HIST1H2BO, OR2B2, OR2B6, ZNF165, ZSCAN16, ZKSCAN8, ZSCAN9, ZKSCAN4, NKAPL, PGBD1, ZSCAN31, ZKSCAN3, ZSCAN12, ZSCAN23, GPX6, SCAND3, TRIM27, C6orf100, ZNF311, OR2W1, OR2B3, OR2J1, OR2J3, OR2J2, OR14J1, OR5V1, OR12D3, OR12D2, OR11A1, OR10C1, OR2H1, MAS1L, UBD, GABBR1, OR2H2	rs3131856-?		7E-16				NR [7428630] (imputed)	N
591	chr6_mann_hap4	910065	910066	rs3131856	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p22.1	NR	rs3131856-?	NR	1E-7		0.1953	[0.12-0.27] unit decrease	Illumina [at least 560000] (imputed)	N
591	chr6_mann_hap4	911149	911149	rs75140056	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Platelet count	8,850 African American individuals, 18,949 Hispanic/Latino individuals, 541 Asian ancestry individuals, 603 Native American ancestry individuals, 385 individuals	NA	6p22.1	NR	rs75140056-?	NR	6E-6		2.374875	[1.35-3.4] unit increase	Illumina [30743395] (imputed)	N
591	chr6_mann_hap4	911149	911149	rs75140056	26805783	Schick UM	2016-01-21	Am J Hum Genet	Genome-wide Association Study of Platelet Count Identifies Ancestry-Specific Loci in Hispanic/Latino Americans.	Platelet count	12,491 Hispanic/Latin American individuals	7,170 Hispanic/Latin American individuals	6p22.1	MOG, GABBR1	rs75140056-C	0.39	1E-9		0.151	[0.10-0.20] unit decrease	Illumina [2232944] (imputed)	N
591	chr6_mann_hap4	912650	912651	rs9257927	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs9257927-?		1E-8		1.66	[1.39-1.97]	Illumina [7645193] (imputed)	N
591	chr6_mann_hap4	914386	914387	rs29232	19664746	Tse KP	2009-08-05	Am J Hum Genet	Genome-wide association study reveals multiple nasopharyngeal carcinoma-associated loci within the HLA region at chromosome 6p21.3.	Nasopharyngeal carcinoma	277 Han Chinese ancestry cases, 285 Han Chinese ancestry controls	635 Han Chinese ancestry cases, 1,640 Han Chinese ancestry controls	6p22.1	GABBR1	rs29232-A	0.46	9E-17		1.67	[1.48-1.88]	Illumina [480365]	N
591	chr6_mann_hap4	914732	914733	rs3117318	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fish- and plant-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	6p22.1	LRRC16A, SCGN, SLC17A4, SLC17A1, SLC17A3, SLC17A2, TRIM38, HIST1H1A, HIST1H3A, HIST1H4A, HIST1H4B, HIST1H3B, HIST1H2AB, HIST1H2BB, HIST1H3C, HIST1H1C, HFE, HIST1H4C, HIST1H1T, HIST1H2BC, HIST1H2AC, HIST1H2BD, HIST1H2BE, HIST1H4D, HIST1H3D, HIST1H2AD, HIST1H2BF, HIST1H4E, HIST1H3G, HIST1H2BI, BTN3A2, BTN2A2, BTN3A1, BTN3A3, BTN2A1, BTN1A1, HMGN4, ABT1, ZNF322, HIST1H2BJ, HIST1H2AG, HIST1H2BK, HIST1H4I, HIST1H2AH, PRSS16, POM121L2, ZNF391, ZNF184, HIST1H2BL, HIST1H2AI, HIST1H3H, HIST1H2AJ, HIST1H2BM, HIST1H4J, HIST1H4K, HIST1H2AK, HIST1H2BN, HIST1H2AL, HIST1H1B, HIST1H3I, HIST1H4L, HIST1H3J, HIST1H2AM, HIST1H2BO, OR2B2, OR2B6, ZNF165, ZSCAN16, ZKSCAN8, ZSCAN9, ZKSCAN4, NKAPL, PGBD1, ZSCAN31, ZKSCAN3, ZSCAN12, ZSCAN23, GPX6, SCAND3, TRIM27, C6orf100, ZNF311, OR2W1, OR2B3, OR2J1, OR2J3, OR2J2, OR14J1, OR5V1, OR12D3, OR12D2, OR11A1, OR10C1, OR2H1, MAS1L, UBD, GABBR1, OR2H2	rs3117318-?	NR	7E-9		0.0168393	[0.011-0.023] unit increase	Affymetrix [25921788] (imputed)	N
591	chr6_mann_hap4	914836	914837	rs3131854	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p22.1		rs3131854-T	0.213	6E-18				Affymetrix [10369434] (imputed)	N
592	chr6_mann_hap4	921915	921916	rs188289856	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p22.1	NR	rs188289856-?	NR	6E-8		0.2325	[0.15-0.32] unit increase	Illumina [at least 560000] (imputed)	N
592	chr6_mann_hap4	925179	925180	rs1233367	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6p22.1	MOG	rs1233367-G	NR	3E-8		0.0181448	[0.012-0.025] unit decrease	Affymetrix [321114] (imputed)	N
592	chr6_mann_hap4	926274	926275	rs9468569	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p22.1	MOG, ZFP57, ZDHHC20P1	rs9468569-A	0.01203611	1E-16	(EA, Alpha-2-macroglobulin receptor-associated protein)	1.631	[1.25-2.01] unit increase	Affymetrix [509946]	N
592	chr6_mann_hap4	927071	927072	rs29234	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	6p22.1	Intergenic	rs29234-?	NR	2E-8		2.219	[NR]	Affymetrix [492217] (imputed)	N
592	chr6_mann_hap4	929279	929280	rs2252711	23284291	Hancock DB	2012-12-20	PLoS Genet	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (smoking interaction)	50,047 European ancestry individuals	NA	6p22.1	MOG	rs2252711-T	NR	4E-7	(FEV1/FVC, Ever-smoking)			NR [~ 2500000] (imputed)	N
592	chr6_mann_hap4	929907	929908	rs16895223	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	MOG	rs16895223-G	NR	4E-10		0.0263599	[0.018-0.035] unit decrease	Affymetrix [321016] (imputed)	N
592	chr6_mann_hap4	931117	931118	rs182971160	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p22.1	NR	rs182971160-?	NR	2E-7		0.3024	[0.19-0.42] unit increase	Illumina [at least 560000] (imputed)	N
592	chr6_mann_hap4	936967	936968	rs3130253	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p22.1	MOG	rs3130253-A		1E-44		0.053	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
592	chr6_mann_hap4	947294	947295	rs28367493	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p22.1		rs28367493-?	NR	2E-11		0.0217788	[0.016-0.028] unit decrease	Affymetrix [20259828] (imputed)	N
592	chr6_mann_hap4	949114	949115	rs396660	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	6p22.1	NR	rs396660-?	NR	3E-10	(MIC-A)	0.504823	[0.35-0.66] unit increase	Illumina [11901634] (imputed)	N
592	chr6_mann_hap4	949814	949815	rs9257953	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	91,908 East Asian ancestry individuals	NA	6p22.1		rs9257953-A	0.223075	3E-9		0.0321111	[0.022-0.043] unit increase	Illumina [13469940] (imputed)	N
592	chr6_mann_hap4	950663	950664	rs17369215	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	6p22.1	Intergenic	rs17369215-T	0.2278	2E-11	(MTAG)	0.0183	[0.013-0.024] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
592	chr6_mann_hap4	951068	951069	rs17184549	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	6p22.1	Intergenic	rs17184549-A	0.2165	1E-8	(MTAG)	0.0124	[0.0081-0.0167] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
592	chr6_mann_hap4	951068	951069	rs17184549	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	6p22.1	Intergenic	rs17184549-A	0.2168	4E-11	(MTAG)	0.0133	[0.0094-0.0172] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
592	chr6_mann_hap4	952494	952495	rs385492	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Uterine fibroids (MTAG)	5,236 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs385492-?		5E-6		1.0309278	[1.02-1.04]	Illumina [7645193] (imputed)	N
592	chr6_mann_hap4	952494	952495	rs385492	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p22.1	HCG4, HCG4B, HCG8, HCG9, HLA-A, HLA-F, HLA-F-AS1, HLA-G, HLA-H, HLA-J, IFITM4P, LOC554223, MOG, PPP1R11, RNF39, ZFP57, ZNRD1, ZNRD1-AS1	rs385492-T		4E-9		1.06	[1.04-1.08]	Affymetrix, Illumina [NR]	N
592	chr6_mann_hap4	952494	952495	rs385492	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	6p22.1	NR	rs385492-T	NR	1E-8		1.06	[NR]	Illumina [7158791] (imputed)	N
592	chr6_mann_hap4	955148	955149	rs3117292	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	ZFP57	rs3117292-G	NR	4E-12		0.0204333	[0.015-0.026] unit decrease	Affymetrix [321016] (imputed)	N
592	chr6_mann_hap4	955202	955203	rs9257985	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Gynecologic disease (multivariate analysis)	up to 7,975 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs9257985-?		2E-8	(uterine fibroid, uterine cervical cancer)			Illumina [7645193] (imputed)	N
592	chr6_mann_hap4	963737	963738	rs3116813	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p22.1	NR	rs3116813-A	0.1026	6E-7	(EA)	0.0553	[0.034-0.077] unit decrease	Illumina [~ 11800000] (imputed)	N
592	chr6_mann_hap4	963866	963867	rs3116812	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8 on Central Memory CD8+ T cell	2,910 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p22.1		rs3116812-G	0.2977	1E-8		0.1871	[0.12-0.25] unit decrease	Illumina [17945467] (imputed)	N
592	chr6_mann_hap4	966818	966819	rs3131888	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	1,505 Ashkenazi Jewish founder cases, 2,553 Ashkenazi Jewish founder controls	NA	6p22.1	NR	rs3131888-C	NR	7E-6		1.2820514	[NR]	Illumina [up to 9792010] (imputed)	N
592	chr6_mann_hap4	968290	968291	rs7764829	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p22.1		rs7764829-A	0.612	4E-25				Affymetrix [10369434] (imputed)	N
592	chr6_mann_hap4	968640	968641	rs9278250	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6p22.1		rs9278250-C	0.247045	7E-12		0.019422151	[0.014-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
592	chr6_mann_hap4	971890	971890	rs143539749	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	ZDHHC20P1	rs143539749-ATATATATTC	NR	3E-9		0.0217332	[0.015-0.029] unit decrease	Affymetrix [323858] (imputed)	N
592	chr6_mann_hap4	971890	971890	rs143539749	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	ZDHHC20P1	rs143539749-ATATATATTC	NR	6E-9		0.0213619	[0.014-0.029] unit decrease	Affymetrix [127266] (imputed)	N
592	chr6_mann_hap4	971940	971941	rs3116800	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	ZDHHC20P1	rs3116800-T	NR	2E-8		0.01833	[0.012-0.025] unit increase	Affymetrix [321016] (imputed)	N
592	chr6_mann_hap4	973209	973210	rs3129055	19664746	Tse KP	2009-08-05	Am J Hum Genet	Genome-wide association study reveals multiple nasopharyngeal carcinoma-associated loci within the HLA region at chromosome 6p21.3.	Nasopharyngeal carcinoma	277 Han Chinese ancestry cases, 285 Han Chinese ancestry controls	635 Han Chinese ancestry cases, 1,640 Han Chinese ancestry controls	6p22.1	HLA-F	rs3129055-G	0.31	7E-11		1.51	[1.34-1.71]	Illumina [480365]	N
592	chr6_mann_hap4	973978	973979	rs9258116	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p22.1		rs9258116-T	0.714	3E-9				Affymetrix [10369434] (imputed)	N
592	chr6_mann_hap4	974015	974016	rs113510833	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	6p22.1	HLA-F, ZFP57	rs113510833-T	0.10919500000000004	3E-8		0.028025	[0.018-0.038] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
592	chr6_mann_hap4	975018	975018	rs11276222	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	6p22.1	ZDHHC20P1	rs11276222-A	NR	5E-8		0.0161712	[0.01-0.022] unit increase	Affymetrix [321788] (imputed)	N
592	chr6_mann_hap4	982962	982963	rs1611371	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p22.1		rs1611371-C	0.228	2E-20				Affymetrix [10369434] (imputed)	N
592	chr6_mann_hap4	988975	988976	rs2517910	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	HLA-F	rs2517910-A	NR	3E-14		0.0214991	[0.016-0.027] unit increase	Affymetrix [321016] (imputed)	N
592	chr6_mann_hap4	991043	991044	rs9258177	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	HLA-F	rs9258177-A	NR	3E-10		0.0194677	[0.013-0.026] unit decrease	Affymetrix [321016] (imputed)	N
592	chr6_mann_hap4	991173	991174	rs9258183	33002439	Jin G	2020-10-01	Lancet Oncol	Genetic risk, incident gastric cancer, and healthy lifestyle: a meta-analysis of genome-wide association studies and prospective cohort study.	Gastric cancer	10,254 Han Chinese ancestry cases, 10,914 Han Chinese ancestry controls	NA	6p22.1	NR	rs9258183-A	0.47	1E-5		1.1	NR	Affymetrix, Illumina [6957974] (imputed)	N
592	chr6_mann_hap4	991523	991524	rs1362126	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal cancer	978 Austrian ancestry colorectal cancer cases, 636 Austrian ancestry advanced colorectal adenoma cases, 4,294 European ancestry controls	NA	6p22.1	Intergenic	rs1362126-?		1E-7		1.3338668	[NR]	Affymetrix [492217] (imputed)	N
592	chr6_mann_hap4	991523	991524	rs1362126	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal cancer	978 Austrian ancestry cases, 4,294 European ancestry controls	NA	6p22.1	Intergenic	rs1362126-?		3E-7		1.3908206	[NR]	Affymetrix [492217] (imputed)	N
592	chr6_mann_hap4	993126	993127	rs2072899	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p22.1	NR	rs2072899-?	NR	7E-18		0.1076	[0.083-0.132] unit increase	Illumina [at least 560000] (imputed)	N
592	chr6_mann_hap4	996008	996009	rs1628578	34050765	Zhang L	2021-05-29	J Clin Endocrinol Metab	Joint genome-wide association analyses identified 49 novel loci for age at natural menopause.	Age at menopause	181,219 European ancestry individuals, 43,861 East Asian ancestry individuals	NA	6p22.1		rs1628578-A	0.71	3E-13		0.1	unit increase	Illumina [2093892] (imputed)	N
592	chr6_mann_hap4	996008	996009	rs1628578	34050765	Zhang L	2021-05-29	J Clin Endocrinol Metab	Joint genome-wide association analyses identified 49 novel loci for age at natural menopause.	Age at menopause	181,219 European ancestry individuals	NA	6p22.1		rs1628578-A	0.71	2E-11		0.1	unit increase	Illumina [2398641] (imputed)	N
592	chr6_mann_hap4	996360	996361	rs2735059	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	6p22.1	NR	rs2735059-A	0.43	3E-13		0.0136	[0.0099-0.0173] unit decrease	NR [NR]	N
592	chr6_mann_hap4	997163	997164	rs885946	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	6p22.1	NR	rs885946-T	0.186879	3E-10		0.05062379	[0.035-0.066] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
592	chr6_mann_hap4	997820	997821	rs60581484	33574277	Kawai Y	2021-02-11	NPJ Genom Med	Mapping of susceptible variants for cold medicine-related Stevens-Johnson syndrome by whole-genome resequencing.	Cold medicine-related Stevens-Johnson syndrome/toxic epidermal necrolysis (SJS/TEN) with severe ocular complications	133 Japanese ancestry cases, 418 Japanese ancestry controls	NA	6p22.1		rs60581484-A	0.218	2E-13		4.204		Illumina [7608150]	N
592	chr6_mann_hap4	1001120	1001121	rs2735054	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p22.1	NR	rs2735054-G	0.413	3E-11	(IFNAR2_of_CD20p)			Illumina [5084123] (imputed)	N
592	chr6_mann_hap4	1006165	1006166	rs2523393	19525953	De Jager PL	2009-06-14	Nat Genet	Meta-analysis of genome scans and replication identify CD6, IRF8 and TNFRSF1A as new multiple sclerosis susceptibility loci.	Multiple sclerosis	2,624 European ancestry cases, 7,220 European ancestry controls	2,215 European ancestry cases, 2,116 European ancestry controls	6p22.1	HLA-B	rs2523393-A	0.59	1E-17		1.28	[1.18-1.39]	Affymetrix, Illumina [~ 2560000] (imputed)	N
592	chr6_mann_hap4	1007773	1007774	rs1633096	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	HLA-F-AS1	rs1633096-T	NR	2E-10		0.0225267	[0.016-0.029] unit decrease	Affymetrix [323858] (imputed)	N
592	chr6_mann_hap4	1007773	1007774	rs1633096	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	HLA-F-AS1	rs1633096-T	NR	3E-10		0.0224137	[0.015-0.029] unit decrease	Affymetrix [127266] (imputed)	N
592	chr6_mann_hap4	1007773	1007774	rs1633096	29196614	Sud A	2017-12-01	Nat Commun	Genome-wide association study of classical Hodgkin lymphoma identifies key regulators of disease susceptibility.	Mixed cellularity Hodgkin lymphoma	828 European ancestry cases, 14,315 European ancestry controls	135 cases, 3,069 controls	6p22.1	HLA-F	rs1633096-?	NR	3E-23		1.79	[1.59-2.00]	Illumina [> 10000000] (imputed)	N
592	chr6_mann_hap4	1009415	1009416	rs374787445	31577861	Dai J	2019-10-31	Int J Cancer	Genome-wide association study of INDELs identified four novel susceptibility loci associated with lung cancer risk.	Lung cancer	20,871 European ancestry cases, 15,971 European ancestry controls, 2,331 Chinese ancestry cases, 3,077 Chinese ancestry controls	NA	6p22.1	HLA-F, AS1	rs374787445-D	0.18	7E-9		1.11	[1.07-1.15]	Illumina [484196]	N
592	chr6_mann_hap4	1012761	1012762	rs9258224	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	HLA-F-AS1, MICE	rs9258224-A	NR	2E-8		0.0282221	[0.018-0.038] unit decrease	Affymetrix [321016] (imputed)	N
592	chr6_mann_hap4	1023655	1023656	rs9258260	22412388	Kenny EE	2012-03-08	PLoS Genet	A genome-wide scan of Ashkenazi Jewish Crohn's disease suggests novel susceptibility loci.	Crohn's disease	737 Ashkenazi Jewish cases, 2,257  Ashkenazi Jewish controls	971 Ashkenazi Jewish cases, 2,124 Ashkenazi Jewish controls	6p22.1	UBD, HLA-A, HLA-G, HLA-F, MOG, GABBR1, HLA-H	rs9258260-T	0.104	2E-10		1.45	[1.21-1.68]	Affymetrix, Illumina [1060934] (imputed)	N
592	chr6_mann_hap4	1026490	1026491	rs1633063	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Sleep duration	384,317 European ancestry individuals	NA	6p22.1		rs1633063-T	0.246	3E-9		0.01681	[0.011-0.022] unit decrease	Affymetrix, Illumina [10862567] (imputed)	N
592	chr6_mann_hap4	1030627	1030628	rs1610633	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p22.1		rs1610633-G	0.752	5E-94				Affymetrix [10369434] (imputed)	N
592	chr6_mann_hap4	1031290	1031291	rs1611284	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p22.1	XXbac-BPG170G13.31	rs1611284-G	NR	2E-9		0.0170381	[0.011-0.023] unit decrease	Affymetrix [319769] (imputed)	N
592	chr6_mann_hap4	1031290	1031291	rs1611284	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p22.1	XXbac-BPG170G13.31	rs1611284-G	NR	2E-8		0.015981	[0.01-0.022] unit decrease	Affymetrix [319769] (imputed)	N
592	chr6_mann_hap4	1033037	1033038	rs1737062	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p22.1		rs1737062-C	0.472	8E-23				Affymetrix [10369434] (imputed)	N
592	chr6_mann_hap4	1035365	1035366	rs35794939	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antithrombotic agents)	67,653 European ancestry cases, 85,986 European ancestry controls, 54,220 East Asian ancestry cases, 124,506 East Asian ancestry controls	NA	6p22.1		rs35794939-G	NR	2E-11		0.086	[0.061-0.111] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
592	chr6_mann_hap4	1035985	1035986	rs115635848	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	XXbac-BPG170G13.31	rs115635848-A	NR	9E-11		0.0221196	[0.015-0.029] unit decrease	Affymetrix [323858] (imputed)	N
592	chr6_mann_hap4	1035985	1035986	rs115635848	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	XXbac-BPG170G13.31	rs115635848-A	NR	8E-11		0.0222067	[0.016-0.029] unit decrease	Affymetrix [127266] (imputed)	N
592	chr6_mann_hap4	1036232	1036233	rs28986310	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	6p22.1	NR	rs28986310-T	0.0618266	2E-8		5.66	z score increase	NR [10847151] (imputed)	N
592	chr6_mann_hap4	1036232	1036233	rs28986310	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	6p22.1	intergenic	rs28986310-T	0.061827	1E-7		5.292	z score increase	Illumina [18485882] (imputed)	N
592	chr6_mann_hap4	1037997	1037998	rs1737030	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mononucleosis	17,457 European ancestry cases, 68,446 European ancestry controls	NA	6p22.1	NR	rs1737030-?	NR	8E-7		0.0636	[0.038-0.089] unit decrease	Illumina [at least 560000] (imputed)	N
592	chr6_mann_hap4	1039115	1039116	rs1815741	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Non-small cell lung cancer	27,120 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	6p22.1	NR	rs1815741-C	0.92	3E-7		0.86	[0.81-0.91]	NR [NR] (imputed)	N
592	chr6_mann_hap4	1039115	1039116	rs1815741	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Lung adenocarcinoma	15,581 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	6p22.1	NR	rs1815741-C	0.92	2E-7		0.84	[0.78-0.89]	NR [NR] (imputed)	N
592	chr6_mann_hap4	1039419	1039420	rs3888722	30169916	Sun Y	2018-08-31	J Eur Acad Dermatol Venereol	Investigation of the Predisposing Factor of Pemphigus and its clinical subtype through a Genome-wide association and next generation sequence analysis.	Pemphigus foliaceus	65 Chinese ancestry cases, 844 Chinese ancestry controls	at least 49 Chinese ancestry cases, up to 996 Chinese ancestry controls	6p22.1	NR	rs3888722-?	NR	7E-9		2.74		Illumina [5546030] (imputed)	N
592	chr6_mann_hap4	1048157	1048158	rs116603789	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p22.1	NR	rs116603789-?	NR	1E-6		0.2936	[0.17-0.41] unit increase	Illumina [at least 560000] (imputed)	N
593	chr6_mann_hap4	1049113	1049114	rs1611236	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p22.1		rs1611236-A	0.678	4E-29				Affymetrix [10369434] (imputed)	N
593	chr6_mann_hap4	1049113	1049114	rs1611236	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p22.1		rs1611236-A	0.678	6E-22				Affymetrix [10369434] (imputed)	N
593	chr6_mann_hap4	1049113	1049114	rs1611236	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p22.1		rs1611236-A	0.678	7E-31				Affymetrix [10369434] (imputed)	N
593	chr6_mann_hap4	1049113	1049114	rs1611236	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p22.1		rs1611236-A	0.678	4E-48				Affymetrix [10369434] (imputed)	N
593	chr6_mann_hap4	1049113	1049114	rs1611236	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p22.1		rs1611236-A	0.678	8E-38				Affymetrix [10369434] (imputed)	N
593	chr6_mann_hap4	1049113	1049114	rs1611236	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p22.1		rs1611236-A	0.678	1E-16				Affymetrix [10369434] (imputed)	N
593	chr6_mann_hap4	1051547	1051548	rs9258357	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p22.1		rs9258357-T	0.163	4E-16				Affymetrix [10369434] (imputed)	N
593	chr6_mann_hap4	1051547	1051548	rs9258357	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	6p22.1		rs9258357-T	0.163	3E-15				Affymetrix [10369434] (imputed)	N
593	chr6_mann_hap4	1051547	1051548	rs9258357	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p22.1		rs9258357-T	0.163	3E-10				Affymetrix [10369434] (imputed)	N
593	chr6_mann_hap4	1053226	1053227	rs9258375	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p22.1	NR	rs9258375-G	0.122	1E-12		0.0131	[0.0094-0.0168] unit decrease	NR [7666894] (imputed)	N
593	chr6_mann_hap4	1053226	1053227	rs9258375	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA	6p22.1	NR	rs9258375-?	NR	8E-6		0.0571	[0.032-0.082] unit decrease	Illumina [at least 560000] (imputed)	N
593	chr6_mann_hap4	1054811	1054812	rs114802991	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	6p22.1	HLA-G	rs114802991-G	0.993211	8E-9		0.072933	[0.048-0.098] unit decrease	Affymetrix [NR] (imputed)	N
593	chr6_mann_hap4	1060294	1060295	rs1611207	32752121	Nedoszytko B	2020-07-31	Int J Mol Sci	Results from a Genome-Wide Association Study (GWAS) in Mastocytosis Reveal New Gene Polymorphisms Associated with WHO Subgroups.	Mastocytosis	234 European ancestry cases, 5,606 European ancestry controls	NA	6p22.1	HLA-V	rs1611207-A	0.3807	3E-13		2.105	[1.9-2.31]	Illumina [281811]	N
593	chr6_mann_hap4	1060294	1060295	rs1611207	32752121	Nedoszytko B	2020-07-31	Int J Mol Sci	Results from a Genome-Wide Association Study (GWAS) in Mastocytosis Reveal New Gene Polymorphisms Associated with WHO Subgroups.	Cutaneous mastocytosis	141 European ancestry cases, 5,606 European ancestry controls	NA	6p22.1	HLA-V	rs1611207-A	0.3807	1E-8		2.01	[-18.0604-22.0804]	Illumina [281811]	N
593	chr6_mann_hap4	1060447	1060448	rs45479291	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	229 European ancestry cases, 1,088 European ancestry controls	NA	6p22.1	HLA-V	rs45479291-?	NR	2E-16	(conditional on rs12524487and rs62392216)			Illumina [4388215] (imputed)	N
593	chr6_mann_hap4	1063321	1063322	rs1737002	32771030	Tangtanatakul P	2020-08-08	Arthritis Res Ther	Meta-analysis of genome-wide association study identifies FBN2 as a novel locus associated with systemic lupus erythematosus in Thai population.	Systemic lupus erythematosus	487 Thai cases, 1,606 Thai controls	405 Thai cases, 1,590 Thai controls	6p22.1	HLA-V	rs1737002-A	0.08	2E-6		1.6334	[NR]	Illumina [421909] (imputed)	N
593	chr6_mann_hap4	1064813	1064814	rs1633005	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p22.1	HCG4, HLA-G	rs1633005-A	0.282	7E-16				Illumina [118177]	N
593	chr6_mann_hap4	1065428	1065429	rs2523414	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	6p22.1	NR	rs2523414-?	NR	6E-14		7.508	NR z score increase	Illumina [at least 830937] (imputed)	N
593	chr6_mann_hap4	1068685	1068686	rs1611185	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	HLA-P	rs1611185-C	NR	2E-9		0.0171984	[0.012-0.023] unit decrease	Affymetrix [321016] (imputed)	N
593	chr6_mann_hap4	1071962	1071963	rs1610660	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	6p22.1	RPL7AP7	rs1610660-G	0.19782	5E-16		0.036476128	[0.028-0.045] unit decrease	Affymetrix [93095623] (imputed)	N
593	chr6_mann_hap4	1078017	1078018	rs9380141	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p22.1	HCG4, HLA-G	rs9380141-C	0.29	1E-6	(EA)	1.94	[1.48-2.55]	Illumina [up to 547389]	N
593	chr6_mann_hap4	1081389	1081390	rs1611182	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	6p22.1	MICG	rs1611182-T	NR	4E-9		0.017276	[0.012-0.023] unit increase	Affymetrix [321788] (imputed)	N
593	chr6_mann_hap4	1082388	1082389	rs1610707	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	6p22.1	MICG	rs1610707-A	0.359635	1E-13		0.02435493	[0.018-0.031] unit increase	Affymetrix [93095623] (imputed)	N
593	chr6_mann_hap4	1087108	1087109	rs56221809	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	6p22.1		rs56221809-G	0.863227	8E-9		0.033593	[0.022-0.045] unit decrease	NR [11722792] (imputed)	N
593	chr6_mann_hap4	1089286	1089287	rs201604542	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p22.1		rs201604542-?	NR	6E-13		0.105892	[0.076-0.135] unit increase	Affymetrix [20259828] (imputed)	N
593	chr6_mann_hap4	1097013	1097014	rs1632941	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	6p22.1	NR	rs1632941-C	0.46	7E-10	(Conditioned on chr6:28129789)	0.015807396	[0.011-0.021] unit decrease	NR [~ 10000000] (imputed)	N
593	chr6_mann_hap4	1097371	1097372	rs145023077	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs145023077-?		7E-8		1.06	[1.04-1.09]	Illumina [7645193] (imputed)	N
593	chr6_mann_hap4	1097371	1097372	rs145023077	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs145023077-?		8E-9		1.83	[1.49-2.25]	Illumina [7645193] (imputed)	N
593	chr6_mann_hap4	1097748	1097749	rs12722482	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p22.1	NR	rs12722482-?	NR	5E-7		0.0966	[0.059-0.134] unit increase	Illumina [at least 560000] (imputed)	N
593	chr6_mann_hap4	1099122	1099123	rs9380142	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	6p22.1	HLA-G	rs9380142-G	0.310253	5E-11		0.0409033	[0.029-0.053] unit decrease	Affymetrix [93095623] (imputed)	N
593	chr6_mann_hap4	1099615	1099616	rs1611141	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	6p22.1	HCG4P8	rs1611141-G	0.499184	2E-24		0.031040031	[0.025-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
593	chr6_mann_hap4	1100557	1100558	rs12662618	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	6p22.1	HCG4P8	rs12662618-C	0.1014	5E-15		0.04632551	[0.035-0.058] unit increase	Affymetrix [~ 2500000] (imputed)	N
593	chr6_mann_hap4	1100557	1100558	rs12662618	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	6p22.1	HCG4P8	rs12662618-C	0.1014	5E-16		0.04778197	[0.036-0.059] unit decrease	Affymetrix [~ 2500000] (imputed)	N
593	chr6_mann_hap4	1100557	1100558	rs12662618	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	6p22.1	HCG4P8	rs12662618-C	0.1015	1E-17		0.05062162	[0.039-0.062] unit decrease	Affymetrix [~ 2500000] (imputed)	N
593	chr6_mann_hap4	1103036	1103037	rs9380145	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p22.1	NR	rs9380145-C	0.361	2E-21	(IFNAR2_of_CD20p)			Illumina [5084123] (imputed)	N
593	chr6_mann_hap4	1107241	1107242	rs407238	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p22.1	HLA-G	rs407238-C	NR	4E-9		0.0168935	[0.011-0.023] unit decrease	Affymetrix [319769] (imputed)	N
593	chr6_mann_hap4	1107241	1107242	rs407238	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p22.1	HLA-G	rs407238-C	NR	2E-8		0.0162062	[0.011-0.022] unit decrease	Affymetrix [319769] (imputed)	N
593	chr6_mann_hap4	1107241	1107242	rs407238	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	HLA-G	rs407238-C	NR	7E-12		0.0196596	[0.014-0.025] unit increase	Affymetrix [321016] (imputed)	N
593	chr6_mann_hap4	1107241	1107242	rs407238	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	23,963 European ancestry cases, 306,942 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	43,254 European ancestry cases, 1,471,118 European ancestry controls	6p22.1	HLA-G	rs407238-C	NR	4E-6		0.0336	unit decrease	Illumina [15409056] (imputed)	N
593	chr6_mann_hap4	1107733	1107734	rs2517887	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	6p22.1	HLA-G	rs2517887-G	0.793716	2E-9		0.0146864	[0.0099-0.0195] unit decrease	Affymetrix [NR] (imputed)	N
593	chr6_mann_hap4	1110125	1110127	rs34590927	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	6p22.1	NR	rs34590927-?	NR	4E-7		0.062	[0.038-0.086] unit decrease	Illumina [at least 560000] (imputed)	N
593	chr6_mann_hap4	1110125	1110127	rs34590927	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	6p22.1	HLA-G, HLA-H	rs34590927-?	NR	4E-7		1.0638298	[1.04-1.09]	Illumina [13754664] (imputed)	N
593	chr6_mann_hap4	1110198	1110199	rs1476570	30529582	Lu Y	2018-12-06	Gastroenterology	Large-scale Genome-wide Association Study of East Asians Identifies Loci Associated With Risk for Colorectal Cancer.	Colorectal cancer	22,775 East Asian ancestry cases, 47,731 East Asian ancestry controls	NA	6p22.1	HLA-G	rs1476570-A	0.376	7E-9		1.12	[1.08-1.16]	Affymetrix, Illumina [up to 10700000] (imputed)	N
593	chr6_mann_hap4	1113235	1113236	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small LDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	1E-8		0.0338512	[0.022-0.046] unit decrease	NR [11722792] (imputed)	N
593	chr6_mann_hap4	1113235	1113236	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium LDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	4E-8		0.0327944	[0.021-0.044] unit decrease	NR [11722792] (imputed)	N
593	chr6_mann_hap4	1113235	1113236	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large LDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	3E-10		0.0370981	[0.026-0.049] unit decrease	NR [11722792] (imputed)	N
593	chr6_mann_hap4	1113235	1113236	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in LDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	1E-9		0.0361295	[0.024-0.048] unit decrease	NR [11722792] (imputed)	N
593	chr6_mann_hap4	1113235	1113236	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in IDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	2E-9		0.0345436	[0.023-0.046] unit decrease	NR [11722792] (imputed)	N
593	chr6_mann_hap4	1113235	1113236	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol minus HDL-C levels	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	5E-10		0.0368197	[0.025-0.048] unit decrease	NR [11722792] (imputed)	N
593	chr6_mann_hap4	1113235	1113236	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Remnant cholesterol (non-HDL, non-LDL -cholesterol)	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	3E-9		0.0352589	[0.024-0.047] unit decrease	NR [11722792] (imputed)	N
593	chr6_mann_hap4	1113235	1113236	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium LDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	1E-8		0.0342027	[0.023-0.046] unit decrease	NR [11722792] (imputed)	N
593	chr6_mann_hap4	1113235	1113236	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large LDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	4E-10		0.0369858	[0.025-0.049] unit decrease	NR [11722792] (imputed)	N
593	chr6_mann_hap4	1113235	1113236	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in LDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	9E-10		0.036396	[0.025-0.048] unit decrease	NR [11722792] (imputed)	N
593	chr6_mann_hap4	1113235	1113236	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in IDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	3E-10		0.0361572	[0.025-0.047] unit decrease	NR [11722792] (imputed)	N
593	chr6_mann_hap4	1113235	1113236	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	LDL cholesterol levels	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	4E-10		0.0370623	[0.025-0.049] unit decrease	NR [11722792] (imputed)	N
593	chr6_mann_hap4	1113235	1113236	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	5E-9		0.0347629	[0.023-0.046] unit decrease	NR [11722792] (imputed)	N
593	chr6_mann_hap4	1113235	1113236	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	1E-8		0.0339143	[0.022-0.046] unit decrease	NR [11722792] (imputed)	N
593	chr6_mann_hap4	1113235	1113236	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	4E-10		0.0372639	[0.026-0.049] unit decrease	NR [11722792] (imputed)	N
593	chr6_mann_hap4	1113235	1113236	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large LDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	1E-10		0.0378589	[0.026-0.049] unit decrease	NR [11722792] (imputed)	N
593	chr6_mann_hap4	1113235	1113236	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in LDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	1E-10		0.0379624	[0.026-0.05] unit decrease	NR [11722792] (imputed)	N
593	chr6_mann_hap4	1113235	1113236	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small LDL particles	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	3E-8		0.0330855	[0.021-0.045] unit decrease	NR [11722792] (imputed)	N
593	chr6_mann_hap4	1113235	1113236	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large LDL particles	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	7E-11		0.038717	[0.027-0.05] unit decrease	NR [11722792] (imputed)	N
593	chr6_mann_hap4	1113235	1113236	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of LDL particles	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	5E-10		0.0371209	[0.025-0.049] unit decrease	NR [11722792] (imputed)	N
593	chr6_mann_hap4	1113235	1113236	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Clinical LDL cholesterol levels	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	2E-10		0.0378905	[0.026-0.05] unit decrease	NR [11722792] (imputed)	N
593	chr6_mann_hap4	1113235	1113236	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small LDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	2E-8		0.033257	[0.022-0.045] unit decrease	NR [11722792] (imputed)	N
593	chr6_mann_hap4	1113235	1113236	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium VLDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	1E-11		0.0401155	[0.029-0.052] unit decrease	NR [11722792] (imputed)	N
593	chr6_mann_hap4	1113235	1113236	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large LDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	2E-10		0.0376083	[0.026-0.049] unit decrease	NR [11722792] (imputed)	N
593	chr6_mann_hap4	1113235	1113236	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in VLDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	4E-8		0.0327951	[0.021-0.044] unit decrease	NR [11722792] (imputed)	N
593	chr6_mann_hap4	1113235	1113236	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in LDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	1E-9		0.0361619	[0.025-0.048] unit decrease	NR [11722792] (imputed)	N
593	chr6_mann_hap4	1113235	1113236	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in IDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	3E-9		0.0342481	[0.023-0.046] unit decrease	NR [11722792] (imputed)	N
593	chr6_mann_hap4	1113235	1113236	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	1E-8		0.0330288	[0.022-0.044] unit decrease	NR [11722792] (imputed)	N
593	chr6_mann_hap4	1113235	1113236	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small LDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	4E-9		0.0352069	[0.024-0.047] unit decrease	NR [11722792] (imputed)	N
593	chr6_mann_hap4	1113235	1113236	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	8E-11		0.0386497	[0.027-0.05] unit decrease	NR [11722792] (imputed)	N
593	chr6_mann_hap4	1113235	1113236	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	2E-8		0.0333427	[0.022-0.045] unit decrease	NR [11722792] (imputed)	N
593	chr6_mann_hap4	1113235	1113236	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large LDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	1E-10		0.0379659	[0.026-0.05] unit decrease	NR [11722792] (imputed)	N
593	chr6_mann_hap4	1113235	1113236	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in IDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	2E-9		0.0344785	[0.023-0.046] unit decrease	NR [11722792] (imputed)	N
593	chr6_mann_hap4	1113235	1113236	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein B levels	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	9E-10		0.0364076	[0.025-0.048] unit decrease	NR [11722792] (imputed)	N
593	chr6_mann_hap4	1116389	1116390	rs2394186	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	6p22.1	NR	rs2394186-G	0.2192	2E-8		0.0271	[0.018-0.037] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
593	chr6_mann_hap4	1116510	1116511	rs28724990	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total free cholesterol levels	115,082 European ancestry individuals	NA	6p22.1		rs28724990-T	0.844316	4E-9		0.0325566	[0.022-0.043] unit decrease	NR [11722792] (imputed)	N
593	chr6_mann_hap4	1116510	1116511	rs28724990	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total esterified cholesterol levels	115,082 European ancestry individuals	NA	6p22.1		rs28724990-T	0.844316	2E-8		0.0309173	[0.02-0.042] unit decrease	NR [11722792] (imputed)	N
593	chr6_mann_hap4	1116510	1116511	rs28724990	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol levels	115,082 European ancestry individuals	NA	6p22.1		rs28724990-T	0.844316	1E-8		0.031549	[0.021-0.042] unit decrease	NR [11722792] (imputed)	N
593	chr6_mann_hap4	1117803	1117803	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	2E-12		0.0298616	[0.022-0.038] unit increase	NR [11722792] (imputed)	N
593	chr6_mann_hap4	1117803	1117803	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	2E-12		0.0298616	[0.022-0.038] unit increase	NR [11722792] (imputed)	N
593	chr6_mann_hap4	1117803	1117803	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	1E-13		0.0318981	[0.023-0.04] unit increase	NR [11722792] (imputed)	N
593	chr6_mann_hap4	1117803	1117803	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	1E-13		0.0318981	[0.023-0.04] unit increase	NR [11722792] (imputed)	N
593	chr6_mann_hap4	1117803	1117803	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	2E-11		0.0287582	[0.02-0.037] unit increase	NR [11722792] (imputed)	N
593	chr6_mann_hap4	1117803	1117803	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	2E-11		0.0287582	[0.02-0.037] unit increase	NR [11722792] (imputed)	N
593	chr6_mann_hap4	1117803	1117803	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	6E-12		0.0290211	[0.021-0.037] unit increase	NR [11722792] (imputed)	N
593	chr6_mann_hap4	1117803	1117803	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	6E-12		0.0290211	[0.021-0.037] unit increase	NR [11722792] (imputed)	N
593	chr6_mann_hap4	1117803	1117803	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of apolipoprotein B to apolipoprotein A1 levels	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	9E-12		0.0295387	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
593	chr6_mann_hap4	1117803	1117803	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of apolipoprotein B to apolipoprotein A1 levels	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	9E-12		0.0295387	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
593	chr6_mann_hap4	1117803	1117803	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	2E-12		0.0296171	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
593	chr6_mann_hap4	1117803	1117803	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	2E-12		0.0296171	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
593	chr6_mann_hap4	1117803	1117803	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	9E-11		0.0275259	[0.019-0.036] unit increase	NR [11722792] (imputed)	N
593	chr6_mann_hap4	1117803	1117803	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	9E-11		0.0275259	[0.019-0.036] unit increase	NR [11722792] (imputed)	N
593	chr6_mann_hap4	1117803	1117803	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	2E-13		0.0307478	[0.023-0.039] unit decrease	NR [11722792] (imputed)	N
593	chr6_mann_hap4	1117803	1117803	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	2E-13		0.0307478	[0.023-0.039] unit decrease	NR [11722792] (imputed)	N
593	chr6_mann_hap4	1117803	1117803	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	2E-9		0.0253353	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
593	chr6_mann_hap4	1117803	1117803	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	2E-9		0.0253353	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
593	chr6_mann_hap4	1117803	1117803	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small LDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	5E-12		0.0303335	[0.022-0.039] unit decrease	NR [11722792] (imputed)	N
593	chr6_mann_hap4	1117803	1117803	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small LDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	5E-12		0.0303335	[0.022-0.039] unit decrease	NR [11722792] (imputed)	N
593	chr6_mann_hap4	1117803	1117803	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in IDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	2E-9		0.0257238	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
593	chr6_mann_hap4	1117803	1117803	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in IDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	2E-9		0.0257238	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
593	chr6_mann_hap4	1117803	1117803	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of IDL particles	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	7E-10		0.0268846	[0.018-0.035] unit decrease	NR [11722792] (imputed)	N
593	chr6_mann_hap4	1117803	1117803	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of IDL particles	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	7E-10		0.0268846	[0.018-0.035] unit decrease	NR [11722792] (imputed)	N
593	chr6_mann_hap4	1117803	1117803	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	4E-12		0.0285378	[0.02-0.037] unit decrease	NR [11722792] (imputed)	N
593	chr6_mann_hap4	1117803	1117803	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	4E-12		0.0285378	[0.02-0.037] unit decrease	NR [11722792] (imputed)	N
593	chr6_mann_hap4	1117803	1117803	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	4E-13		0.0301476	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
593	chr6_mann_hap4	1117803	1117803	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	4E-13		0.0301476	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
593	chr6_mann_hap4	1118133	1118134	rs28728979	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	MICF	rs28728979-A	NR	3E-8		0.0362437	[0.023-0.049] unit decrease	Affymetrix [321016] (imputed)	N
593	chr6_mann_hap4	1118694	1118695	rs2523761	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	NR	rs2523761-?	NR	6E-8		5.432	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
593	chr6_mann_hap4	1119567	1119568	rs9258593	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6p22.1		rs9258593-?	NR	9E-6		1.05543	[1.03-1.08]	NR [685523]	N
593	chr6_mann_hap4	1121308	1121309	rs17179234	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MRPL55	5,367 Icelandic ancestry individuals	NA	6p22.1		rs17179234-A	0.1077	3E-55		0.466688	[0.41-0.53] unit increase	Illumina [7506463] (imputed)	N
593	chr6_mann_hap4	1121574	1121575	rs17185657	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	6p22.1	MICF	rs17185657-T	0.076717	2E-15		0.032850858	[0.025-0.041] unit increase	Affymetrix [93095623] (imputed)	N
593	chr6_mann_hap4	1122050	1122051	rs9258644	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p22.1		rs9258644-?	NR	3E-17		0.0268138	[0.021-0.033] unit decrease	Affymetrix [20259828] (imputed)	N
593	chr6_mann_hap4	1122400	1122401	rs58005484	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	6p22.1	MICF	rs58005484-T	0.140864	8E-28		0.035311565	[0.029-0.042] unit increase	Affymetrix [93095623] (imputed)	N
593	chr6_mann_hap4	1122400	1122401	rs58005484	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	6p22.1	MICF	rs58005484-T	0.140853	1E-24		0.033428524	[0.027-0.04] unit decrease	Affymetrix [93095623] (imputed)	N
593	chr6_mann_hap4	1122400	1122401	rs58005484	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	6p22.1	MICF	rs58005484-T	0.1409	2E-20		0.04769708	[0.038-0.058] unit increase	Affymetrix [~ 2500000] (imputed)	N
593	chr6_mann_hap4	1128619	1128620	rs2523822	21570397	Lucena MI	2011-04-12	Gastroenterology	Susceptibility to amoxicillin-clavulanate-induced liver injury is influenced by multiple HLA class I and II alleles.	Drug-induced liver injury (amoxicillin-clavulanate)	201 European ancestry cases, 532 European ancestry controls	NA	6p22.1	HLA-A	rs2523822-?	NR	2E-10		2.3	[1.80-2.90]	Illumina [822927]	N
593	chr6_mann_hap4	1128931	1128932	rs9258750	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6p22.1		rs9258750-G	0.176259	2E-14		0.023563657	[0.018-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
593	chr6_mann_hap4	1129211	1129212	rs1611713	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p22.1		rs1611713-A	0.712	2E-64				Affymetrix [10369434] (imputed)	N
593	chr6_mann_hap4	1129596	1129597	rs1611719	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	6p22.1	HLA-G	rs1611719-G	0.79027	5E-13		0.0174799	[0.013-0.022] unit increase	Affymetrix [NR] (imputed)	N
593	chr6_mann_hap4	1129596	1129597	rs1611719	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	6p22.1	HLA-G	rs1611719-G	0.790195	1E-14		0.019154	[0.014-0.024] unit increase	Affymetrix [NR] (imputed)	N
593	chr6_mann_hap4	1132294	1132295	rs2524035	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	6p22.1	intergenic	rs2524035-G	0.8188	3E-23		0.04626543	[0.037-0.055] unit decrease	Affymetrix [~ 2500000] (imputed)	N
593	chr6_mann_hap4	1132657	1132658	rs1611747	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small LDL	115,082 European ancestry individuals	NA	6p22.1		rs1611747-T	0.604397	4E-10		0.0262493	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
593	chr6_mann_hap4	1132657	1132658	rs1611747	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p22.1		rs1611747-T	0.604	9E-22				Affymetrix [10369434] (imputed)	N
593	chr6_mann_hap4	1132808	1132809	rs2517827	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	MICF	rs2517827-A	NR	2E-10		0.0215463	[0.015-0.028] unit decrease	Affymetrix [323858] (imputed)	N
593	chr6_mann_hap4	1132808	1132809	rs2517827	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	MICF	rs2517827-A	NR	8E-11		0.0219247	[0.015-0.029] unit decrease	Affymetrix [127266] (imputed)	N
593	chr6_mann_hap4	1132954	1132955	rs34832458	31577861	Dai J	2019-10-31	Int J Cancer	Genome-wide association study of INDELs identified four novel susceptibility loci associated with lung cancer risk.	Lung cancer	20,871 European ancestry cases, 15,971 European ancestry controls, 2,331 Chinese ancestry cases, 3,077 Chinese ancestry controls	NA	6p22.1	HLA-G	rs34832458-T	0.39	1E-9		0.92	[0.89-0.94]	Illumina [484196]	N
593	chr6_mann_hap4	1133018	1133019	rs3128900	33269293	Kannambath S	2020-10-16	Open Forum Infect Dis	Genome-Wide Association Study Identifies Novel Colony Stimulating Factor 1 Locus Conferring Susceptibility to Cryptococcosis in Human Immunodeficiency Virus-Infected South Africans.	Cryptococcosis in HIV infection	319 South African ancestry cases, 399 South African ancestry controls	NA	6p22.1	HLA-H	rs3128900-?	NR	5E-6		0.9658	[NR]	Illumina [2686126] (imputed)	N
593	chr6_mann_hap4	1133018	1133019	rs3128900	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6p22.1		rs3128900-T	0.845434	2E-21		0.032471824	[0.026-0.039] unit decrease	Affymetrix [93095623] (imputed)	N
593	chr6_mann_hap4	1133433	1133434	rs7760545	33574277	Kawai Y	2021-02-11	NPJ Genom Med	Mapping of susceptible variants for cold medicine-related Stevens-Johnson syndrome by whole-genome resequencing.	Cold medicine-related Stevens-Johnson syndrome/toxic epidermal necrolysis (SJS/TEN) with severe ocular complications	133 Japanese ancestry cases, 418 Japanese ancestry controls	NA	6p22.1		rs7760545-A	0.2594	4E-16		4.373		Illumina [7608150]	N
593	chr6_mann_hap4	1136699	1136700	rs1611637	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	IgM levels	14,442 Icelandic ancestry individuals	2,157 Swedish ancestry individuals	6p22.1	HLA-G	rs1611637-A	0.4554	1E-21		0.11	NR SD units increase	Illumina [21568490] (imputed)	N
593	chr6_mann_hap4	1137465	1137466	rs885932	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p22.1	NR	rs885932-A	0.190644	2E-12		0.026577342	[0.019-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
593	chr6_mann_hap4	1140201	1140202	rs2523815	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p22.1	HLA-A	rs2523815-A	0.64	2E-22		1.12	[1.11-1.14]	Illumina [at least 560000] (imputed)	N
593	chr6_mann_hap4	1140696	1140697	rs3132713	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	6p22.1		rs3132713-A	0.181	2E-27				Affymetrix [10369434] (imputed)	N
593	chr6_mann_hap4	1141173	1141174	rs56213322	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	6p22.1		rs56213322-A	0.819527	5E-23		0.029193865	[0.023-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
593	chr6_mann_hap4	1142497	1142498	rs2734963	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Oral cavity and pharyngeal cancer	1,223 European ancestry cases, 410,350 European ancestry controls	NA	6p22.1		rs2734963-T	0.193283	6E-7		1.2753475	NR	Affymetrix [7846216] (imputed)	N
593	chr6_mann_hap4	1143897	1143898	rs2523809	22075330	Granada M	2011-11-08	J Allergy Clin Immunol	A genome-wide association study of plasma total IgE concentrations in the Framingham Heart Study.	IgE levels	6,819 European ancestry individuals	7,809 European ancestry indivduals	6p22.1	HLA-G	rs2523809-T	NR	4E-8		0.06	[NR] unit increase	Affymetrix [2540223] (imputed)	N
593	chr6_mann_hap4	1145011	1145012	rs1611579	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6p22.1	HLA-H	rs1611579-C	0.122264	4E-17		0.051560964	[0.04-0.064] unit increase	Affymetrix [93095623] (imputed)	N
593	chr6_mann_hap4	1145011	1145012	rs1611579	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p22.1	NR	rs1611579-C	0.098	8E-7	(EA)	0.058	[0.035-0.081] unit decrease	Illumina [~ 11800000] (imputed)	N
593	chr6_mann_hap4	1145118	1145119	rs1611581	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	6p22.1	NR	rs1611581-C	0.682015	5E-8		0.0185265	[0.012-0.025] unit increase	Affymetrix [16577424] (imputed)	N
593	chr6_mann_hap4	1147732	1147733	rs2523802	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	6p22.1	NR	rs2523802-?	NR	2E-8		0.088	[0.057-0.119] unit decrease	Illumina [at least 560000] (imputed)	N
593	chr6_mann_hap4	1148864	1148865	rs2734950	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	6p22.1	HLA-H	rs2734950-T	0.402539	6E-12		0.01625928	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
593	chr6_mann_hap4	1150138	1150139	rs2734947	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hypothyroidism	1,114 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	6p22.1		rs2734947-C	0.497362317	4E-13		0.35440555	[0.26-0.45] unit increase	Illumina [13429045] (imputed)	N
593	chr6_mann_hap4	1166686	1166687	rs189370103	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	6p22.1	NR	rs189370103-?	NR	8E-6	(Native Hawaiian)	1.0607	[NR] unit increase	Illumina [up to 11892802] (imputed)	N
593	chr6_mann_hap4	1170168	1170169	rs2517873	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Squamous cell lung carcinoma	8,350 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	6p22.1	NR	rs2517873-A	NR	2E-10		1.23	[1.15-1.31]	NR [NR] (imputed)	N
593	chr6_mann_hap4	1170168	1170169	rs2517873	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Non-small cell lung cancer	27,120 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	6p22.1	NR	rs2517873-A	NR	5E-11		1.16	[1.11-1.21]	NR [NR] (imputed)	N
593	chr6_mann_hap4	1170168	1170169	rs2517873	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Lung adenocarcinoma	15,581 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	6p22.1	NR	rs2517873-A	NR	3E-6		1.13	[1.08-1.20]	NR [NR] (imputed)	N
593	chr6_mann_hap4	1170168	1170169	rs2517873	31326317	Dai J	2019-07-17	Lancet Respir Med	Identification of risk loci and a polygenic risk score for lung cancer: a large-scale prospective cohort study in Chinese populations.	Non-small cell lung cancer	13,327 Chinese ancestry cases, 13,793 European ancestry cases, 13,328 Chinese ancestry controls, 14,027 European ancestry controls	NA	6p22.1	MHC	rs2517873-A	0.145	5E-11		1.16	[1.11-1.21]	Illumina [~ 11000000] (imputed)	N
594	chr6_mann_hap4	1183499	1183500	rs75460055	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p22.1	NR	rs75460055-T	0.039	5E-18	(conditional)	0.47	[0.3-0.64]	Illumina [11270530] (imputed)	N
594	chr6_mann_hap4	1185002	1185003	rs1611399	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	HCG4B	rs1611399-C	NR	5E-8		0.0192493	[0.012-0.026] unit decrease	Affymetrix [323858] (imputed)	N
594	chr6_mann_hap4	1185002	1185003	rs1611399	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	HCG4B	rs1611399-C	NR	4E-8		0.0194622	[0.013-0.026] unit decrease	Affymetrix [127266] (imputed)	N
594	chr6_mann_hap4	1187819	1187820	rs9259819	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	6p22.1	HLA-J	rs9259819-G	0.5	2E-9		1.036	[1.02-1.05]	Affymetrix, Illumina [8307659] (imputed)	N
594	chr6_mann_hap4	1191336	1191337	rs389725	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	6p22.1	HCG4B, HLA-U	rs389725-T	0.78328	3E-30		0.03487705	[0.029-0.041] unit decrease	Affymetrix [93095623] (imputed)	N
594	chr6_mann_hap4	1192323	1192324	rs2975009	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	6p22.1	HCG4B, HLA-U	rs2975009-T	0.4651	7E-24		0.0380916	[0.031-0.046] unit increase	Affymetrix [~ 2500000] (imputed)	N
594	chr6_mann_hap4	1193834	1193835	rs2471863	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p22.1	HLA-A	rs2471863-C	0.526	8E-7		0.057	[0.033-0.081] unit increase	Affymetrix, Illumina [7374092] (imputed)	N
594	chr6_mann_hap4	1193884	1193885	rs2524005	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Varicose veins	22,037 European ancestry cases, 437,665 European ancestry controls, 474 East Asian ancestry cases, 178,252 East Asian ancestry controls	NA	6p22.1		rs2524005-A	NR	1E-12		0.0995	[0.072-0.127] unit decrease	Affymetrix, Illumina [25842955] (imputed)	N
594	chr6_mann_hap4	1193884	1193885	rs2524005	22688191	Bergen SE	2012-06-12	Mol Psychiatry	Genome-wide association study in a Swedish population yields support for greater CNV and MHC involvement in schizophrenia compared with bipolar disorder.	Bipolar disorder and schizophrenia	2,111 European ancestry schizophrenia cases, 836 European ancestry bipolar disorder cases, 2,535 European ancestry controls	NA	6p22.1	other genes, MHC	rs2524005-?	NR	5E-7		1.32	[NR]	Affymetrix [745006]	N
594	chr6_mann_hap4	1194900	1194901	rs72498354	32339537	Roberts V	2020-04-24	J Invest Dermatol	Genome wide association study identifies genetic associations with perceived age.	Youthful appearance (self-reported)	423,992 European ancestry individuals	NA	6p22.1	HLA-A	rs72498354-C	0.960927	4E-9		0.933287	NR	Affymetrix [~ 9600000] (imputed)	N
594	chr6_mann_hap4	1195829	1195830	rs410930	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	6p22.1		rs410930-G	0.437235	1E-8		0.024544	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
594	chr6_mann_hap4	1196070	1196071	rs1611337	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6p22.1		rs1611337-G	0.437603	2E-14		0.0312596	[0.023-0.039] unit decrease	NR [11722792] (imputed)	N
594	chr6_mann_hap4	1196070	1196071	rs1611337	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	6p22.1		rs1611337-G	0.437688	8E-10		0.0255967	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
594	chr6_mann_hap4	1196070	1196071	rs1611337	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p22.1		rs1611337-G	0.437603	8E-16		0.0334002	[0.025-0.042] unit decrease	NR [11722792] (imputed)	N
594	chr6_mann_hap4	1196070	1196071	rs1611337	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6p22.1		rs1611337-G	0.437603	9E-12		0.0276947	[0.02-0.036] unit decrease	NR [11722792] (imputed)	N
594	chr6_mann_hap4	1196070	1196071	rs1611337	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6p22.1		rs1611337-G	0.437603	1E-13		0.0306584	[0.023-0.039] unit increase	NR [11722792] (imputed)	N
594	chr6_mann_hap4	1196070	1196071	rs1611337	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	6p22.1		rs1611337-G	0.437688	4E-9		0.0245909	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
594	chr6_mann_hap4	1196070	1196071	rs1611337	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	6p22.1		rs1611337-G	0.437603	2E-9		0.0245327	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
594	chr6_mann_hap4	1196070	1196071	rs1611337	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p22.1		rs1611337-G	0.437603	5E-18		0.036723	[0.028-0.045] unit increase	NR [11722792] (imputed)	N
594	chr6_mann_hap4	1196070	1196071	rs1611337	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6p22.1		rs1611337-G	0.437603	5E-10		0.0250212	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
594	chr6_mann_hap4	1196070	1196071	rs1611337	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	6p22.1		rs1611337-G	0.437688	5E-8		0.0224294	[0.014-0.03] unit increase	NR [11722792] (imputed)	N
594	chr6_mann_hap4	1196070	1196071	rs1611337	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p22.1		rs1611337-G	0.437603	4E-17		0.0351407	[0.027-0.043] unit increase	NR [11722792] (imputed)	N
594	chr6_mann_hap4	1196070	1196071	rs1611337	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6p22.1		rs1611337-G	0.437603	7E-11		0.02633	[0.018-0.034] unit increase	NR [11722792] (imputed)	N
594	chr6_mann_hap4	1196363	1196364	rs9259970	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6p22.1		rs9259970-G	0.717498	4E-15		0.0371322	[0.028-0.046] unit decrease	NR [11722792] (imputed)	N
594	chr6_mann_hap4	1196363	1196364	rs9259970	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	6p22.1		rs9259970-G	0.717498	5E-8		0.0259759	[0.017-0.035] unit decrease	NR [11722792] (imputed)	N
594	chr6_mann_hap4	1196363	1196364	rs9259970	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	6p22.1		rs9259970-G	0.717498	6E-10		0.0286546	[0.02-0.038] unit decrease	NR [11722792] (imputed)	N
594	chr6_mann_hap4	1197815	1197816	rs3098023	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium HDL	115,082 European ancestry individuals	NA	6p22.1		rs3098023-A	0.863945	3E-9		0.0367615	[0.025-0.049] unit increase	NR [11722792] (imputed)	N
594	chr6_mann_hap4	1197815	1197816	rs3098023	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large HDL	115,082 European ancestry individuals	NA	6p22.1		rs3098023-A	0.863945	6E-9		0.0349811	[0.023-0.047] unit increase	NR [11722792] (imputed)	N
594	chr6_mann_hap4	1197815	1197816	rs3098023	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in HDL	115,082 European ancestry individuals	NA	6p22.1		rs3098023-A	0.863945	2E-8		0.0348764	[0.023-0.047] unit increase	NR [11722792] (imputed)	N
594	chr6_mann_hap4	1197815	1197816	rs3098023	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium HDL	115,082 European ancestry individuals	NA	6p22.1		rs3098023-A	0.863945	3E-13		0.0429887	[0.031-0.055] unit increase	NR [11722792] (imputed)	N
594	chr6_mann_hap4	1197815	1197816	rs3098023	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in HDL	115,082 European ancestry individuals	NA	6p22.1		rs3098023-A	0.863945	9E-11		0.0369227	[0.026-0.048] unit increase	NR [11722792] (imputed)	N
594	chr6_mann_hap4	1197830	1197831	rs28749114	33002439	Jin G	2020-10-01	Lancet Oncol	Genetic risk, incident gastric cancer, and healthy lifestyle: a meta-analysis of genome-wide association studies and prospective cohort study.	Gastric cancer	10,254 Han Chinese ancestry cases, 10,914 Han Chinese ancestry controls	NA	6p22.1	NR	rs28749114-A	0.6	5E-9		1.14	NR	Affymetrix, Illumina [6957974] (imputed)	N
594	chr6_mann_hap4	1197830	1197831	rs28749114	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p22.1	HLA-A	rs28749114-G	0.359	4E-17	(Tapasin-related protein, TAPBPL.6364.7.3)	0.22	[0.16-0.28] unit decrease	Affymetrix [10572788] (imputed)	N
594	chr6_mann_hap4	1198088	1198089	rs112580141	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HVEM on naive CD8+ T cell	1,247 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p22.1		rs112580141-C	0.37079	2E-8		0.2622	[0.17-0.35] unit increase	Illumina [16410374] (imputed)	N
594	chr6_mann_hap4	1198323	1198324	rs9260013	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8 on Central Memory CD8+ T cell	2,910 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p22.1		rs9260013-T	0.19942	5E-11		0.2579	[0.18-0.33] unit increase	Illumina [17945467] (imputed)	N
594	chr6_mann_hap4	1198688	1198689	rs453325	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	6p22.1	HLA-A	rs453325-A	0.7549	2E-8		0.002	[0.0014-0.0026] unit decrease	Affymetrix [15275733] (imputed)	N
594	chr6_mann_hap4	1199066	1199067	rs2860580	27436580	Cui Q	2016-07-19	Hum Mol Genet	An extended genome-wide association study identifies novel susceptibility loci for nasopharyngeal carcinoma.	Nasopharyngeal carcinoma	1,583 Southern Chinese ancestry cases, 2,979 Southern Chinese ancestry controls	5,463 Southern Chinese ancestry cases, 5,591 Southern Chinese ancestry controls	6p22.1	NR	rs2860580-?	0.62	3E-31		1.89	[1.69-2.13]	Illumina [463250]	N
594	chr6_mann_hap4	1199066	1199067	rs2860580	20512145	Bei JX	2010-05-30	Nat Genet	A genome-wide association study of nasopharyngeal carcinoma identifies three new susceptibility loci.	Nasopharyngeal carcinoma	1,583 Chinese ancestry cases, 1,894 Chinese ancestry controls	3,507 Chinese ancestry cases, 3,063 Chinese ancestry controls, 284  Chinese ancestry trios	6p22.1	HLA-A	rs2860580-?	0.62	5E-67		1.72	[1.61-1.82]	Illumina [464328]	N
594	chr6_mann_hap4	1199151	1199152	rs3916500	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p22.1	HLA-A	rs3916500-A	0.94	7E-6		0.0619	[0.035-0.089] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
594	chr6_mann_hap4	1200209	1200210	rs28749130	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	6p22.1	HLA-A	rs28749130-A	0.290175	2E-20		0.05423409	[0.043-0.066] unit increase	Affymetrix [93095623] (imputed)	N
594	chr6_mann_hap4	1200269	1200270	rs28749131	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6p22.1	NR	rs28749131-G	0.6706	2E-10		1.041016	[1.03-1.05]	Affymetrix [15688218] (imputed)	N
594	chr6_mann_hap4	1201189	1201190	rs13203830	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p22.1	NR	rs13203830-?	NR	8E-10				Affymetrix [~ 8270000] (imputed)	N
594	chr6_mann_hap4	1201416	1201417	rs9260078	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein B2M	5,353 Icelandic ancestry individuals	NA	6p22.1		rs9260078-A	0.3408	3E-12		0.126365	[0.091-0.162] unit increase	Illumina [7506463] (imputed)	N
594	chr6_mann_hap4	1201600	1201601	rs1632887	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		6p22.1	HLA-A	rs1632887-T	0.725853	2E-12		0.0110934	[0.008-0.0142] unit decrease	Affymetrix [12370749]	N
594	chr6_mann_hap4	1201663	1201664	rs138847126	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental extreme longevity (95 years and older)	1,339 middle-aged British cases, 40,934 middle-aged British controls	NA	6p22.1	NR	rs138847126-?	NR	7E-6		0.01176	[0.0066-0.0169] unit decrease	Affymetrix [9658292] (imputed)	N
594	chr6_mann_hap4	1202207	1202208	rs534723171	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p22.1	NR	rs534723171-T	0.061	2E-30	(conditional)	2.735	[2.56-2.91]	Illumina [11270530] (imputed)	N
594	chr6_mann_hap4	1202742	1202743	rs1143146	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	6p22.1	HLA-A	rs1143146-G	0.462795	8E-17		0.019093748	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
594	chr6_mann_hap4	1202762	1202763	rs41546314	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p22.1		rs41546314-T	0.309983	5E-23		1.0479736	[1.04-1.05]	Affymetrix, Illumina [9851866] (imputed)	N
594	chr6_mann_hap4	1202861	1202862	rs9260127	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Triglycerides	429,011 European ancestry individuals	NA	6p22.1		rs9260127-G	0.45	7E-14		0.015	mmol/L decrease	NR [NR] (imputed)	N
594	chr6_mann_hap4	1202861	1202862	rs9260127	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	6p22.1		rs9260127-G	0.45	3E-20				NR [NR] (imputed)	N
594	chr6_mann_hap4	1202861	1202862	rs9260127	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	High density lipoprotein cholesterol levels	392,965 European ancestry individuals	NA	6p22.1		rs9260127-G	0.45	4E-13		0.013	mmol/L decrease	NR [NR] (imputed)	N
594	chr6_mann_hap4	1202861	1202862	rs9260127	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	6p22.1		rs9260127-G	0.45	8E-12		0.01	% increase	NR [NR] (imputed)	N
594	chr6_mann_hap4	1202861	1202862	rs9260127	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Aspartate aminotransferase levels	424,778 European ancestry individuals	NA	6p22.1		rs9260127-G	0.45	4E-17		0.016	U/L decrease	NR [NR] (imputed)	N
594	chr6_mann_hap4	1202861	1202862	rs9260127	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	6p22.1	HCG4P5	rs9260127-C	0.554534	6E-12		0.01662031	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
594	chr6_mann_hap4	1203114	1203115	rs79361534	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p22.1	HLA-A	rs79361534-A		1E-36		0.036	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
594	chr6_mann_hap4	1203142	1203143	rs1071742	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p22.1		rs1071742-?	NR	2E-17		0.0224179	[0.018-0.027] unit decrease	Affymetrix [20259828] (imputed)	N
594	chr6_mann_hap4	1203150	1203151	rs1136689	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	6p22.1	HLA-A	rs1136689-C	0.145613	8E-12		0.022252768	[0.016-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
594	chr6_mann_hap4	1203184	1203185	rs1136692	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	HLA-A, HCG4P5	rs1136692-A	NR	1E-9		0.0207185	[0.014-0.027] unit decrease	Affymetrix [323858] (imputed)	N
594	chr6_mann_hap4	1203184	1203185	rs1136692	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	HLA-A, HCG4P5	rs1136692-A	NR	1E-9		0.0208558	[0.014-0.028] unit decrease	Affymetrix [127266] (imputed)	N
594	chr6_mann_hap4	1203413	1203414	rs9260151	29404672	Roshandel D	2018-02-05	Diabetologia	Meta-genome-wide association studies identify a locus on chromosome 1 and multiple variants in the MHC region for serum C-peptide in type 1 diabetes.	C-peptide levels in type I diabetes	3,479 European ancestry individuals	NA	6p22.1	MHC, HLA-A	rs9260151-T	0.09	8E-8				Illumina [7988630] (imputed)	N
594	chr6_mann_hap4	1203497	1203498	rs3173420	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	6p22.1	HLA-A	rs3173420-A	0.525347	1E-30		0.02624179	[0.022-0.031] unit increase	Affymetrix [93095623] (imputed)	N
594	chr6_mann_hap4	1203611	1203612	rs9256983	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p22.1	NR	rs9256983-?	NR	5E-6		0.0485	[0.028-0.069] unit increase	Illumina [at least 560000] (imputed)	N
594	chr6_mann_hap4	1203622	1203623	rs9260155	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p22.1	HLA-A	rs9260155-C	0.420482	2E-24		0.027366111	[0.022-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
594	chr6_mann_hap4	1203739	1203740	rs3132687	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	6p22.1	NR	rs3132687-?	NR	2E-11	(MIC-A)	0.664201	[0.47-0.86] unit increase	Illumina [11901634] (imputed)	N
594	chr6_mann_hap4	1204072	1204073	rs9260164	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	6p22.1	HLA-A	rs9260164-C	0.737668	6E-21		0.0151662	[0.012-0.018] unit decrease	Affymetrix [12370749]	N
594	chr6_mann_hap4	1204860	1204861	rs9260194	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycoprotein acetyls levels	115,082 European ancestry individuals	NA	6p22.1		rs9260194-C	0.511331	5E-17		0.0344827	[0.026-0.043] unit decrease	NR [11722792] (imputed)	N
594	chr6_mann_hap4	1204897	1204898	rs2975059	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p22.1		rs2975059-T	0.673	3E-55				Affymetrix [10369434] (imputed)	N
594	chr6_mann_hap4	1204897	1204898	rs2975059	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6p22.1	HLA-A	rs2975059-C	0.327132	2E-74		0.04847726	[0.043-0.054] unit increase	Affymetrix [93095623] (imputed)	N
594	chr6_mann_hap4	1204997	1204998	rs17882753	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	6p22.1	HLA-A	rs17882753-T	0.1254	6E-21		0.05153304	[0.041-0.062] unit increase	Affymetrix [~ 2500000] (imputed)	N
594	chr6_mann_hap4	1205698	1205699	rs1061235	21428769	McCormack M	2011-03-24	N Engl J Med	HLA-A*3101 and carbamazepine-induced hypersensitivity reactions in Europeans.	Adverse response to carbamazepine	65 European ancestry cases, 3,987 European ancestry controls	80 European ancestry cases, 257 European ancestry controls	6p22.1	HLA-A*3101	rs1061235-?	NR	1E-7		9.12	[4.03-20.65]	Illumina [~ 1200000] (imputed)	N
594	chr6_mann_hap4	1206286	1206287	rs34941730	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p22.1	HLA-A	rs34941730-G	0.119	2E-9		0.102	[0.069-0.135] unit decrease	Affymetrix, Illumina [7374092] (imputed)	N
594	chr6_mann_hap4	1206933	1206934	rs376253	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6p22.1	HLA-A	rs376253-A	NR	3E-10		0.0221166	[0.015-0.029] unit decrease	Affymetrix [321114] (imputed)	N
594	chr6_mann_hap4	1207173	1207174	rs17179564	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	82,810 East Asian ancestry individuals	NA	6p22.1		rs17179564-A	0.36573	6E-10		0.0301926	[0.021-0.04] unit increase	Illumina [13467171] (imputed)	N
594	chr6_mann_hap4	1207228	1207229	rs2735099	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p22.1	NR	rs2735099-T	0.417	3E-26	(IFNAR2_of_CD20p)			Illumina [5084123] (imputed)	N
594	chr6_mann_hap4	1207461	1207462	rs2248162	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	HLA-A	rs2248162-T	NR	3E-8		0.0179351	[0.012-0.024] unit decrease	Affymetrix [323858] (imputed)	N
594	chr6_mann_hap4	1208285	1208286	rs2517720	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6p22.1	HLA-A	rs2517720-C	0.555569	1E-14		0.022822132	[0.017-0.029] unit increase	Affymetrix [93095623] (imputed)	N
594	chr6_mann_hap4	1209193	1209194	rs1655901	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	6p22.1	HLA-A	rs1655901-C	0.557583	3E-22		0.02534704	[0.02-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
594	chr6_mann_hap4	1209274	1209275	rs9260313	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p22.1	HLA-A	rs9260313-C		5E-24		0.02	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
594	chr6_mann_hap4	1209274	1209275	rs9260313	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	6p22.1	HLA-A	rs9260313-C	0.2875	1E-15		0.03200038	[0.024-0.04] unit increase	Affymetrix [~ 2500000] (imputed)	N
594	chr6_mann_hap4	1209274	1209275	rs9260313	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	6p22.1	HLA-A	rs9260313-C	0.2876	1E-15		0.03178619	[0.024-0.04] unit increase	Affymetrix [~ 2500000] (imputed)	N
594	chr6_mann_hap4	1210471	1210472	rs2517713	19664746	Tse KP	2009-08-05	Am J Hum Genet	Genome-wide association study reveals multiple nasopharyngeal carcinoma-associated loci within the HLA region at chromosome 6p21.3.	Nasopharyngeal carcinoma	277 Han Chinese ancestry cases, 285 Han Chinese ancestry controls	635 Han Chinese ancestry cases, 1,640 Han Chinese ancestry controls	6p22.1	HLA-A	rs2517713-A	0.62	4E-20		1.88	[1.65-2.15]	Illumina [480365]	N
594	chr6_mann_hap4	1211477	1211478	rs9260426	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p22.1		rs9260426-?	NR	6E-27		0.0229231	[0.019-0.027] unit increase	Affymetrix [20259828] (imputed)	N
594	chr6_mann_hap4	1211477	1211478	rs9260426	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	6p22.1	HLA-A	rs9260426-A	0.498682	2E-8	(women)	0.0236393	[0.015-0.033] unit increase	NR [17166351] (imputed)	N
594	chr6_mann_hap4	1211477	1211478	rs9260426	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	6p22.1	HLA-A	rs9260426-A	0.498488	3E-11		0.020854	[0.014-0.027] unit increase	NR [17166351] (imputed)	N
594	chr6_mann_hap4	1212152	1212153	rs7747253	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	6p22.1	HLA-A	rs7747253-C	0.499099	1E-33		0.022146	[0.019-0.026] unit increase	NR [13737936] (imputed)	N
594	chr6_mann_hap4	1218935	1218936	rs9260489	23417110	Tin A	2013-02-16	Hum Genet	Genome-wide association study identified the human leukocyte antigen region as a novel locus for plasma beta-2 microglobulin.	Beta-2 microglubulin plasma levels	6,728 European ancestry individuals		6p22.1	HLA-A	rs9260489-G	0.58	2E-22		0.04	[0.032-0.048] unit decrease	Affymetrix [2500000] (imputed)	N
594	chr6_mann_hap4	1218935	1218936	rs9260489	22190364	Patsopoulos NA	2011-12-01	Ann Neurol	Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.	Multiple sclerosis	5,545 European ancestry cases, 12,153 European ancestry controls	NA	6p22.1	HLA-B	rs9260489-T	0.45	1E-11		1.21	[NR]	Affymetrix, Illumina [2529394]	N
594	chr6_mann_hap4	1219025	1219026	rs9260492	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p22.1		rs9260492-T	0.5	3E-19				Affymetrix [10369434] (imputed)	N
594	chr6_mann_hap4	1219315	1219316	rs9260500	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p22.1		rs9260500-T	0.5	2E-56				Affymetrix [10369434] (imputed)	N
594	chr6_mann_hap4	1219636	1219637	rs28749167	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	286 European ancestry cases, 2,652 European ancestry controls, 76 Han Chinese ancestry cases, 889 Han Chinese ancestry controls, 46 South Asian ancestry cases, 501 South Asian ancestry controls, 683 Turkish ancestry cases, 1,721 Turkish ancestry controls	NA	6p22.1	HLA-G	rs28749167-?	NR	2E-9	(conditional on rs2844678, rs12524487, rs17193507 and rs12526858)	1.43	NR	Illumina [up to 4495750] (imputed)	N
594	chr6_mann_hap4	1219775	1219776	rs9260526	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (underestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	6p22.1	NR	rs9260526-?	NR	5E-9		5.864	NR z score increase	Illumina [at least 830937] (imputed)	N
594	chr6_mann_hap4	1220062	1220063	rs137886986	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6p22.1	HLA-W	rs137886986-A	0.09576	8E-24		0.039658234	[0.032-0.047] unit increase	Affymetrix [93095623] (imputed)	N
594	chr6_mann_hap4	1221268	1221269	rs28780071	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	Intrinsic epigenetic age acceleration	34,461 European ancestry individuals	NA	6p22.1	NR	rs28780071-T	0.3313	4E-9		0.2035	[0.14-0.27] unit increase	Affymetrix, Illumina [7567980] (imputed)	N
594	chr6_mann_hap4	1221341	1221342	rs16896742	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NPTX1	5,365 Icelandic ancestry individuals	NA	6p22.1		rs16896742-G	0.4238	6E-28		0.206363	[0.17-0.24] unit decrease	Illumina [7506463] (imputed)	N
594	chr6_mann_hap4	1221341	1221342	rs16896742	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	6p22.1	HLA-A	rs16896742-G	0.38	3E-10		0.04	[0.028-0.052] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
594	chr6_mann_hap4	1221355	1221356	rs9260603	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p22.1	HLA-W	rs9260603-T	NR	2E-8		0.0159518	[0.01-0.021] unit increase	Affymetrix [319769] (imputed)	N
594	chr6_mann_hap4	1221355	1221356	rs9260603	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p22.1	HLA-W	rs9260603-T	NR	4E-8		0.0156092	[0.01-0.021] unit increase	Affymetrix [319769] (imputed)	N
594	chr6_mann_hap4	1221689	1221690	rs9260619	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p22.1	NR	rs9260619-?	NR	3E-11		0.2395	[0.17-0.31] unit increase	Illumina [at least 560000] (imputed)	N
594	chr6_mann_hap4	1221694	1221695	rs9260620	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	6p22.1	HLA-W	rs9260620-G	0.3359	2E-74		0.06971236	[0.062-0.077] unit decrease	Affymetrix [~ 2500000] (imputed)	N
594	chr6_mann_hap4	1221694	1221695	rs9260620	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	6p22.1	HLA-W	rs9260620-G	0.3358	2E-44		0.05337227	[0.046-0.061] unit decrease	Affymetrix [~ 2500000] (imputed)	N
594	chr6_mann_hap4	1221694	1221695	rs9260620	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	6p22.1	HLA-W	rs9260620-G	0.3358	4E-40		0.05070884	[0.043-0.058] unit decrease	Affymetrix [~ 2500000] (imputed)	N
594	chr6_mann_hap4	1221694	1221695	rs9260620	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	6p22.1	HLA-W	rs9260620-G	0.3358	2E-39		0.05008696	[0.043-0.058] unit decrease	Affymetrix [~ 2500000] (imputed)	N
594	chr6_mann_hap4	1221694	1221695	rs9260620	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	6p22.1	HLA-W	rs9260620-G	0.3358	6E-51		0.05759035	[0.05-0.065] unit decrease	Affymetrix [~ 2500000] (imputed)	N
594	chr6_mann_hap4	1221694	1221695	rs9260620	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	6p22.1	HLA-W	rs9260620-G	0.3357	4E-53		0.05836372	[0.051-0.066] unit decrease	Affymetrix [~ 2500000] (imputed)	N
594	chr6_mann_hap4	1221694	1221695	rs9260620	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	6p22.1	HLA-W	rs9260620-G	0.3358	7E-45		0.05377813	[0.046-0.061] unit decrease	Affymetrix [~ 2500000] (imputed)	N
594	chr6_mann_hap4	1221851	1221852	rs7768235	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p22.1	HLA-W	rs7768235-C	0.514186	1E-16		0.022017317	[0.017-0.027] unit increase	Affymetrix [93095623] (imputed)	N
594	chr6_mann_hap4	1221851	1221852	rs7768235	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	6p22.1	HLA-W	rs7768235-C	0.514229	5E-14		0.02060967	[0.015-0.026] unit increase	Affymetrix [93095623] (imputed)	N
594	chr6_mann_hap4	1221851	1221852	rs7768235	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p22.1		rs7768235-?	NR	7E-25		0.0219262	[0.018-0.026] unit increase	Affymetrix [20259828] (imputed)	N
594	chr6_mann_hap4	1221955	1221956	rs2904758	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	6p22.1	HLA-W	rs2904758-A	0.7187	6E-17		0.03315845	[0.025-0.041] unit decrease	Affymetrix [~ 2500000] (imputed)	N
594	chr6_mann_hap4	1222027	1222028	rs9260639	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	6p22.1	HLA-W	rs9260639-T	0.1389	2E-14		0.03938988	[0.029-0.05] unit increase	Affymetrix [~ 2500000] (imputed)	N
594	chr6_mann_hap4	1222107	1222108	rs2571389	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p22.1		rs2571389-T	0.5	1E-30				Affymetrix [10369434] (imputed)	N
594	chr6_mann_hap4	1222158	1222159	rs2571390	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8 on Effector Memory CD8+ T cell	2,912 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p22.1		rs2571390-C	0.82253	6E-22		0.3643	[0.29-0.44] unit increase	Illumina [17945888] (imputed)	N
594	chr6_mann_hap4	1222461	1222462	rs2571391	22075330	Granada M	2011-11-08	J Allergy Clin Immunol	A genome-wide association study of plasma total IgE concentrations in the Framingham Heart Study.	IgE levels	6,819 European ancestry individuals	7,809 European ancestry indivduals	6p22.1	HLA-A	rs2571391-C	NR	1E-15		0.06	[NR] unit increase	Affymetrix [2540223] (imputed)	N
594	chr6_mann_hap4	1222843	1222844	rs2571392	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	6p22.1	HLA-W	rs2571392-A	0.314446	4E-11		0.023026897	[0.016-0.03] unit increase	Affymetrix [93095623] (imputed)	N
594	chr6_mann_hap4	1222990	1222991	rs2571394	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TAPBPL	5,368 Icelandic ancestry individuals	NA	6p22.1		rs2571394-G	0.3722	1E-15		0.160938	[0.12-0.2] unit decrease	Illumina [7506463] (imputed)	N
594	chr6_mann_hap4	1223041	1223042	rs17179851	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Gynecologic disease	7,975 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs17179851-?		7E-8		1.11	[1.07-1.15]	Illumina [7645193] (imputed)	N
594	chr6_mann_hap4	1223041	1223042	rs17179851	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Gynecologic disease	7,315 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs17179851-?		7E-7				Illumina [7645193] (imputed)	N
594	chr6_mann_hap4	1223143	1223144	rs1808199	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	6p22.1	HLA-W	rs1808199-T	0.092214	4E-22		0.03959165	[0.032-0.048] unit decrease	Affymetrix [93095623] (imputed)	N
594	chr6_mann_hap4	1223704	1223705	rs114193679	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mumps	31,227 European ancestry cases, 54,153 European ancestry controls	NA	6p22.1	HLA-A	rs114193679-G	0.99	2E-17		1.72	[1.62-1.84]	Illumina [at least 560000] (imputed)	N
594	chr6_mann_hap4	1223870	1223871	rs17186335	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p22.1	NR	rs17186335-?	NR	3E-8		0.0898	[0.058-0.122] unit decrease	Illumina [at least 560000] (imputed)	N
594	chr6_mann_hap4	1224469	1224470	rs62392216	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	57 Italian ancestry cases, 931 Italian ancestry controls	NA	6p22.1	HLA-B	rs62392216-?	NR	1E-11				Illumina [4425173] (imputed)	N
594	chr6_mann_hap4	1224469	1224470	rs62392216	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	229 European ancestry cases, 1,088 European ancestry controls	NA	6p22.1	HLA-G	rs62392216-?	NR	3E-11	(conditional on rs12524487)			Illumina [4388215] (imputed)	N
594	chr6_mann_hap4	1224969	1224970	rs9260679	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	6p22.1	NR	rs9260679-?	NR	9E-90		20.092	NR z score increase	Illumina [at least 830937] (imputed)	N
594	chr6_mann_hap4	1225687	1225688	rs2735085	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	HLA-W	rs2735085-A	NR	5E-8		0.0198962	[0.013-0.027] unit decrease	Affymetrix [321016] (imputed)	N
594	chr6_mann_hap4	1225874	1225875	rs114577328	28043905	Nicoletti P	2016-12-30	Gastroenterology	Association of Liver Injury From Specific Drugs, or Groups of Drugs, With Polymorphisms in HLA and Other Genes in a Genome-Wide Association Study.	Drug-induced liver injury	862 European ancestry cases and 10,588 European ancestry controls	NA	6p22.1	MHC	rs114577328-?	0.01	2E-8		2.7	1.9-3.8	Illumina [505740] (imputed)	N
594	chr6_mann_hap4	1226314	1226315	rs2571400	34642315	Ferreiro-Iglesias A	2021-10-12	Nat Commun	Germline determinants of humoral immune response to HPV-16 protect against oropharyngeal cancer.	Human papilloma virus 16 positive oropharyngeal cancer	1,078 European ancestry cases, 5,256 European ancestry controls	NA	6p22.1		rs2571400-G	NR	3E-6		1.2905		Illumina [7574753] (imputed)	N
594	chr6_mann_hap4	1226314	1226315	rs2571400	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	HLA-W	rs2571400-C	NR	5E-8		5.453	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
594	chr6_mann_hap4	1227666	1227667	rs2517690	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p22.1	NR	rs2517690-?	NR	7E-9				Affymetrix [~ 8270000] (imputed)	N
594	chr6_mann_hap4	1229528	1229529	rs56262516	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8 on CD28- CD8+ T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p22.1		rs56262516-A	0.27456	1E-11		0.23	[0.16-0.3] unit increase	Illumina [17954496] (imputed)	N
594	chr6_mann_hap4	1229528	1229529	rs56262516	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8 on CD28+ CD45RA- CD8+ T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p22.1		rs56262516-A	0.27456	7E-13		0.2531	[0.18-0.32] unit increase	Illumina [17954496] (imputed)	N
594	chr6_mann_hap4	1229934	1229935	rs192543598	31066027	Nicoletti P	2019-05-07	Clin Pharmacol Ther	Shared genetic risk factors across carbamazepine-induced hypersensitivity reactions.	Carbamazepine-induced serious cutaneous adverse reaction	43 European ancestry cases, 10,701 European ancestry controls	NA	6p22.1	NR	rs192543598-G	0.01	2E-12		18.11	[8.03-40.88]	Illumina [5271349] (imputed)	N
594	chr6_mann_hap4	1230486	1230487	rs2517683	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	6p22.1	HLA-W	rs2517683-C	NR	5E-10		0.0183528	[0.013-0.024] unit decrease	Affymetrix [321788] (imputed)	N
594	chr6_mann_hap4	1230873	1230874	rs2523933	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	HLA-W	rs2523933-T	NR	2E-9		6.01	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
594	chr6_mann_hap4	1231809	1231810	rs2517678	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	6p22.1	intergenic	rs2517678-T	0.3811	2E-9		0.02249725	[0.015-0.03] unit increase	Affymetrix [~ 2500000] (imputed)	N
594	chr6_mann_hap4	1231845	1231846	rs6457109	33574277	Kawai Y	2021-02-11	NPJ Genom Med	Mapping of susceptible variants for cold medicine-related Stevens-Johnson syndrome by whole-genome resequencing.	Cold medicine-related Stevens-Johnson syndrome/toxic epidermal necrolysis (SJS/TEN) with severe ocular complications	133 Japanese ancestry cases, 418 Japanese ancestry controls	NA	6p22.1		rs6457109-C	0.2519	3E-16		4.516		Illumina [7608150]	N
594	chr6_mann_hap4	1232604	1232605	rs6914699	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	MICD	rs6914699-T	NR	3E-8		5.569	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
594	chr6_mann_hap4	1232746	1232747	rs6935053	23511034	Yang SK	2013-04-01	Inflamm Bowel Dis	Genome-wide association study of ulcerative colitis in Koreans suggests extensive overlapping of genetic susceptibility with Caucasians.	Ulcerative colitis	388 Korean ancestry cases, 739 Korean ancestry controls	417 Korean ancestry cases, 732 Korean ancestry controls	6p22.1	HCG9	rs6935053-?	NR	2E-6	(Conditioned on rs9271366)			Illumina [581060]	N
594	chr6_mann_hap4	1233831	1233832	rs3893464	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p22.1		rs3893464-G	0.514	7E-43				Affymetrix [10369434] (imputed)	N
594	chr6_mann_hap4	1233831	1233832	rs3893464	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	6p22.1	MICD	rs3893464-A	0.4884	7E-54		0.05503962	[0.048-0.062] unit decrease	Affymetrix [~ 2500000] (imputed)	N
594	chr6_mann_hap4	1233831	1233832	rs3893464	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	6p22.1	MICD	rs3893464-A	0.4883	8E-55		0.05548136	[0.049-0.062] unit decrease	Affymetrix [~ 2500000] (imputed)	N
594	chr6_mann_hap4	1233831	1233832	rs3893464	21900946	Nakabayashi K	2011-09-08	J Hum Genet	Identification of independent risk loci for Graves' disease within the MHC in the Japanese population.	Graves' disease	1,119 Japanese ancestry cases, 2,718 Japanese ancestry controls	432 Japanese ancestry cases, 1,157 Japanese ancestry controls	6p22.1	MHC	rs3893464-G	0.36	2E-20		1.53	[1.39-1.67]	Perlegen [268068]	N
594	chr6_mann_hap4	1233986	1233987	rs3893463	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	MICD	rs3893463-T	NR	2E-8		5.65	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
594	chr6_mann_hap4	1234301	1234302	rs56402621	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	6p22.1	HLA-A, ZNRD1-AS1	rs56402621-T	0.0181	2E-7		0.0330166	[0.021-0.045] unit increase	Affymetrix [11880941] (imputed)	N
594	chr6_mann_hap4	1235214	1235215	rs9260765	33143745	Andlauer TFM	2020-11-04	BMC Med	Treatment- and population-specific genetic risk factors for anti-drug antibodies against interferon-beta: a GWAS.	Binding antibody response to interferon beta therapy in multiple sclerosis (antibody levels; all treatment preparations)	up to 2,000 German and Swedish ancestry individuals	up to 757 German and Swedish ancestry individuals	6p22.1		rs9260765-C	0.45	5E-11		0.17372645	[0.12-0.23] unit increase	Illumina [8550834] (imputed)	N
594	chr6_mann_hap4	1235912	1235916	rs60131261	27723757	Jin Y	2016-11-01	Nat Genet	Genome-wide association studies of autoimmune vitiligo identify 23 new risk loci and highlight key pathways and regulatory variants.	Vitiligo	2,853 European ancestry cases and 37,405 European ancestry controls	1,827 European ancestry cases and 2,181 European ancestry controls	6p22.1	HLA-A	rs60131261-?	NR	2E-66		1.535	NR	Illumina [8966411] (imputed)	N
594	chr6_mann_hap4	1236131	1236132	rs1061539	30566020	Fukaya E	2018-12-01	Circulation	Clinical and Genetic Determinants of Varicose Veins.	Varicose veins	9,577 British ancestry cases, 327,959 British ancestry controls	NA	6p22.1	NR	rs1061539-C	0.83	2E-9		0.113	[0.076-0.15] unit decrease	Affymetrix [10972371] (imputed)	N
594	chr6_mann_hap4	1236360	1236361	rs2523972	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p22.1	MICD	rs2523972-C	NR	1E-11		0.0191491	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
594	chr6_mann_hap4	1236360	1236361	rs2523972	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p22.1	MICD	rs2523972-C	NR	1E-10		0.0182302	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
594	chr6_mann_hap4	1236360	1236361	rs2523972	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	MICD	rs2523972-C	NR	1E-12		0.0200168	[0.014-0.026] unit decrease	Affymetrix [321016] (imputed)	N
594	chr6_mann_hap4	1236500	1236501	rs1061535	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	6p22.1	NR	rs1061535-?	NR	1E-6		0.0535	[0.032-0.075] unit decrease	Illumina [at least 560000] (imputed)	N
594	chr6_mann_hap4	1236553	1236554	rs2517671	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	6p22.1	HCG9	rs2517671-G	0.419267	3E-22		0.023432834	[0.019-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
594	chr6_mann_hap4	1237724	1237725	rs2523968	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p22.1	NR	rs2523968-A	0.429	4E-12	(conditional)	1.132	[1.1-1.17]	Illumina [11270530] (imputed)	N
594	chr6_mann_hap4	1238156	1238157	rs2523961	29784950	Sawai H	2018-05-21	Sci Rep	Genome-wide association study identified new susceptible genetic variants in HLA class I region for hepatitis B virus-related hepatocellular carcinoma.	Hepatocellular carcinoma in hepatitis B infection	473 Japanese ancestry chronic hepatitis and hepatocellular carcinoma cases, 516 Japanese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma	153 Japanese ancestry chronic hepatitis and hepatocellular carcinoma cases, 614 Japanese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma, 94 Chinese ancestry chronic hepatitis and hepatocellular carcinoma cases, 187 Chinese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma, 185 Thai ancestry chronic hepatitis and hepatocellular carcinoma cases, 198 Thai ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma	6p22.1	HLA	rs2523961-?	NR	6E-11		1.91	[1.56-2.37] Japanese	Affymetrix [447830]	N
594	chr6_mann_hap4	1238156	1238157	rs2523961	29784950	Sawai H	2018-05-21	Sci Rep	Genome-wide association study identified new susceptible genetic variants in HLA class I region for hepatitis B virus-related hepatocellular carcinoma.	Hepatocellular carcinoma in hepatitis B infection	473 Japanese ancestry chronic hepatitis and hepatocellular carcinoma cases, 516 Japanese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma	153 Japanese ancestry chronic hepatitis and hepatocellular carcinoma cases, 614 Japanese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma, 94 Chinese ancestry chronic hepatitis and hepatocellular carcinoma cases, 187 Chinese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma, 185 Thai ancestry chronic hepatitis and hepatocellular carcinoma cases, 198 Thai ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma	6p22.1	HLA	rs2523961-?	NR	6E-10	(Japanese)	1.91	[1.56-2.37]	Affymetrix [447830]	N
594	chr6_mann_hap4	1240003	1240004	rs9295825	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p22.1	NR	rs9295825-?	NR	3E-18		0.1197	[0.092-0.147] unit increase	Illumina [at least 560000] (imputed)	N
594	chr6_mann_hap4	1240385	1240386	rs444252	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Strep throat	52,487 European ancestry cases, 22,017 European ancestry controls	NA	6p22.1	NR	rs444252-?	NR	1E-6		0.0267	[0.016-0.037] unit increase	Illumina [at least 560000] (imputed)	N
594	chr6_mann_hap4	1240515	1240516	rs2523946	32912934	Li M	2020-09-10	J Am Soc Nephrol	Genome-Wide Meta-Analysis Identifies Three Novel Susceptibility Loci and Reveals Ethnic Heterogeneity of Genetic Susceptibility for IgA Nephropathy.	IgA nephropathy	2,628 Chinese ancestry cases, 11,563 Chinese ancestry controls	6,879 Han Chinese ancestry cases, 9,019 Han Chinese ancestry controls, 1,039 Italian ancestry cases, 1,289 Italian ancestry controls	6p22.1	HLA-A	rs2523946-C	0.5077594888869671	2E-8	(East Asian)	1.2170416	[1.13667796674979-1.3030869883916]	NR [3611808] (imputed)	N
594	chr6_mann_hap4	1240515	1240516	rs2523946	26028593	Li M	2015-06-01	Nat Commun	Identification of new susceptibility loci for IgA nephropathy in Han Chinese.	IgA nephropathy	1,434 Han Chinese ancestry cases, 10,661 Han Chinese ancestry controls	6,879 Han Chinese ancestry cases, 9,019 Han Chinese ancestry controls	6p22.1	NR	rs2523946-C	0.511	5E-11		1.317	[1.217-1.426]	Illumina [3792949] (imputed)	N
594	chr6_mann_hap4	1240515	1240516	rs2523946	22197929	Yu XQ	2011-12-25	Nat Genet	A genome-wide association study in Han Chinese identifies multiple susceptibility loci for IgA nephropathy.	IgA nephropathy	1,434 Han Chinese ancestry cases, 4,270 Han Chinese ancestry controls	2,703 Han Chinese ancestry cases, 3,464 Han Chinese ancestry controls	6p22.1	HLA-A	rs2523946-C	0.50	2E-11		1.21	[1.15-1.28]	Illumina [444882]	N
594	chr6_mann_hap4	1240655	1240656	rs3823355	20410501	Jin Y	2010-04-21	N Engl J Med	Variant of TYR and autoimmunity susceptibility loci in generalized vitiligo.	Vitiligo	1,392 European ancestry cases, 2,629 European ancestry controls	647 European ancestry cases, 1,056 European ancestry controls, 183 European ancestry trios, 1,383 European ancestry individuals from 332 families	6p22.1	HLA-A, HCG9	rs3823355-T	0.29	9E-23		1.5	[1.39-1.63]	Illumina [520460]	N
594	chr6_mann_hap4	1240958	1240959	rs35835721	33574277	Kawai Y	2021-02-11	NPJ Genom Med	Mapping of susceptible variants for cold medicine-related Stevens-Johnson syndrome by whole-genome resequencing.	Cold medicine-related Stevens-Johnson syndrome/toxic epidermal necrolysis (SJS/TEN) with severe ocular complications	133 Japanese ancestry cases, 418 Japanese ancestry controls	NA	6p22.1		rs35835721-G	0.4624	8E-15		3.091		Illumina [7608150]	N
594	chr6_mann_hap4	1241246	1241247	rs1960063	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	HCG9	rs1960063-A	NR	4E-10		0.0213735	[0.015-0.028] unit decrease	Affymetrix [323858] (imputed)	N
594	chr6_mann_hap4	1241246	1241247	rs1960063	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	HCG9	rs1960063-A	NR	4E-10		0.0213569	[0.015-0.028] unit decrease	Affymetrix [127266] (imputed)	N
594	chr6_mann_hap4	1241647	1241648	rs6904029	24939585	Fransen E	2014-06-18	Eur J Hum Genet	Genome-wide association analysis demonstrates the highly polygenic character of age-related hearing impairment.	Age-related hearing impairment	1,489 European ancestry individuals	NA	6p22.1	HLA-A29.1, HCG9	rs6904029-?		3E-6	(PC3)	0.0464	[NR] unit decrease	Illumina [4167292] (imputed)	N
594	chr6_mann_hap4	1242231	1242232	rs2394250	23749187	Cortes A	2013-07-01	Nat Genet	Identification of multiple risk variants for ankylosing spondylitis through high-density genotyping of immune-related loci.	Ankylosing spondylitis	9,069 European ancestry cases, 1,550 East Asian ancestry cases, 13,578 European ancestry controls, 1,567 East Asian ancestry controls	NA	6p22.1	HLA-A*0201	rs2394250-?	0.421	8E-51	(EA)	1.541		Illumina [128935]	N
594	chr6_mann_hap4	1242263	1242264	rs2394251	33269293	Kannambath S	2020-10-16	Open Forum Infect Dis	Genome-Wide Association Study Identifies Novel Colony Stimulating Factor 1 Locus Conferring Susceptibility to Cryptococcosis in Human Immunodeficiency Virus-Infected South Africans.	Cryptococcosis in HIV infection	319 South African ancestry cases, 399 South African ancestry controls	NA	6p22.1	HLA-H	rs2394251-?	NR	9E-6		0.7439	[NR]	Illumina [2686126] (imputed)	N
594	chr6_mann_hap4	1242290	1242291	rs3823363	34642315	Ferreiro-Iglesias A	2021-10-12	Nat Commun	Germline determinants of humoral immune response to HPV-16 protect against oropharyngeal cancer.	Oropharynx cancer and human papilloma virus 16 negative oropharyngeal cancer	2,359 European ancestry cases, 565 European ancestry controls	NA	6p22.1		rs3823363-A	NR	1E-7		0.8222		Illumina [up to 7574753] (imputed)	N
594	chr6_mann_hap4	1243036	1243037	rs3823379	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	6p22.1	HLA-A	rs3823379-T	0.487762	1E-16		0.0171763	[0.013-0.021] unit decrease	Affymetrix [NR] (imputed)	N
594	chr6_mann_hap4	1243121	1243122	rs2735075	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p22.1		rs2735075-T	0.592	2E-18				Affymetrix [10369434] (imputed)	N
594	chr6_mann_hap4	1244527	1244528	rs3132685	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small HDL	115,082 European ancestry individuals	NA	6p22.1		rs3132685-G	0.865719	1E-10		0.0393348	[0.027-0.051] unit increase	NR [11722792] (imputed)	N
594	chr6_mann_hap4	1244527	1244528	rs3132685	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	6p22.1		rs3132685-G	0.865719	6E-9		0.0355211	[0.024-0.047] unit decrease	NR [11722792] (imputed)	N
594	chr6_mann_hap4	1244527	1244528	rs3132685	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small HDL	115,082 European ancestry individuals	NA	6p22.1		rs3132685-G	0.865719	5E-12		0.0418299	[0.03-0.054] unit increase	NR [11722792] (imputed)	N
594	chr6_mann_hap4	1244527	1244528	rs3132685	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-3 fatty acid levels	115,006 European ancestry individuals	NA	6p22.1		rs3132685-G	0.865725	2E-11		0.0394662	[0.028-0.051] unit increase	NR [11722792] (imputed)	N
594	chr6_mann_hap4	1244527	1244528	rs3132685	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Monounsaturated fatty acid levels	115,006 European ancestry individuals	NA	6p22.1		rs3132685-G	0.865725	2E-8		0.033954	[0.022-0.046] unit increase	NR [11722792] (imputed)	N
594	chr6_mann_hap4	1244527	1244528	rs3132685	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small HDL	115,082 European ancestry individuals	NA	6p22.1		rs3132685-G	0.865719	5E-10		0.0372621	[0.026-0.049] unit increase	NR [11722792] (imputed)	N
594	chr6_mann_hap4	1244527	1244528	rs3132685	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p22.1	NR	rs3132685-A	0.1302	2E-13		0.0131	[0.0096-0.0166] unit decrease	NR [7666894] (imputed)	N
594	chr6_mann_hap4	1253669	1253670	rs17180647	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p22.1	NR	rs17180647-?	NR	4E-7		0.3884	[0.24-0.54] unit decrease	Illumina [at least 560000] (imputed)	N
594	chr6_mann_hap4	1258568	1258569	rs7749944	30850646	Tziotzios C	2019-03-08	Nat Commun	Genome-wide association study in frontal fibrosing alopecia identifies four susceptibility loci including HLA-B*07:02.	Frontal fibrosing alopecia	1,016 European ancestry cases, 4,145 European ancestry controls		6p22.1	NR	rs7749944-?	0.006	8E-42		10.06	[7.2-14.1]	Illumina [~ 8000000] (imputed)	N
594	chr6_mann_hap4	1263397	1263398	rs12110437	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	76 Han Chinese ancestry cases, 889 Han Chinese ancestry controls	NA	6p22.1	HLA-G	rs12110437-?	NR	2E-10				Illumina [3403929] (imputed)	N
594	chr6_mann_hap4	1269161	1269162	rs7758512	20041166	Fellay J	2009-12-24	PLoS Genet	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	6p22.1	HLA-A, ZNRD1, RNF39	rs7758512-?	NR	2E-8	(progression)			Illumina [NR]	N
594	chr6_mann_hap4	1269533	1269534	rs3094146	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total concentration of lipoprotein particles	115,082 European ancestry individuals	NA	6p22.1		rs3094146-G	0.871463	2E-9		0.0352048	[0.024-0.047] unit increase	NR [11722792] (imputed)	N
594	chr6_mann_hap4	1269533	1269534	rs3094146	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Polyunsaturated fatty acid levels	115,006 European ancestry individuals	NA	6p22.1		rs3094146-G	0.871472	2E-13		0.0443955	[0.033-0.056] unit increase	NR [11722792] (imputed)	N
594	chr6_mann_hap4	1269533	1269534	rs3094146	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6p22.1		rs3094146-G	0.871463	1E-8		0.0355971	[0.023-0.048] unit decrease	NR [11722792] (imputed)	N
594	chr6_mann_hap4	1269533	1269534	rs3094146	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphoglycerides levels	115,006 European ancestry individuals	NA	6p22.1		rs3094146-G	0.871472	3E-10		0.0370038	[0.026-0.049] unit increase	NR [11722792] (imputed)	N
594	chr6_mann_hap4	1269533	1269534	rs3094146	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphatidylcholine levels	115,006 European ancestry individuals	NA	6p22.1		rs3094146-G	0.871472	3E-9		0.0343894	[0.023-0.046] unit increase	NR [11722792] (imputed)	N
594	chr6_mann_hap4	1269533	1269534	rs3094146	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	6p22.1		rs3094146-G	0.871463	5E-10		0.0351913	[0.024-0.046] unit increase	NR [11722792] (imputed)	N
594	chr6_mann_hap4	1269533	1269534	rs3094146	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium HDL particles	115,082 European ancestry individuals	NA	6p22.1		rs3094146-G	0.871463	2E-11		0.0384568	[0.027-0.05] unit increase	NR [11722792] (imputed)	N
594	chr6_mann_hap4	1269533	1269534	rs3094146	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of HDL particles	115,082 European ancestry individuals	NA	6p22.1		rs3094146-G	0.871463	4E-10		0.0365016	[0.025-0.048] unit increase	NR [11722792] (imputed)	N
594	chr6_mann_hap4	1269533	1269534	rs3094146	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	6p22.1		rs3094146-G	0.871463	2E-9		0.034562	[0.023-0.046] unit increase	NR [11722792] (imputed)	N
594	chr6_mann_hap4	1269533	1269534	rs3094146	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein A1 levels	115,082 European ancestry individuals	NA	6p22.1		rs3094146-G	0.871463	9E-11		0.036855	[0.026-0.048] unit increase	NR [11722792] (imputed)	N
594	chr6_mann_hap4	1269533	1269534	rs3094146	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p22.1	ZNRD1-AS1	rs3094146-C	NR	4E-10		0.0289428	[0.02-0.038] unit decrease	Affymetrix [323858] (imputed)	N
594	chr6_mann_hap4	1269533	1269534	rs3094146	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Help-seeking from a GP (without major depressive disorder symptoms)	8,632 British ancestry cases, 49,493 British ancestry controls	NA	6p22.1	NR	rs3094146-G	0.87	5E-8		1.1494253	[1.10-1.20]	NR [5276842] (imputed)	N
594	chr6_mann_hap4	1269533	1269534	rs3094146	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p22.1	NR	rs3094146-C	0.1057	7E-7	(EA)	0.0543	[0.033-0.076] unit decrease	Illumina [~ 11800000] (imputed)	N
594	chr6_mann_hap4	1272498	1272499	rs4313034	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p22.1		rs4313034-T	0.825373	2E-18		1.048594	[1.04-1.06]	Affymetrix, Illumina [9851866] (imputed)	N
594	chr6_mann_hap4	1272498	1272499	rs4313034	21900946	Nakabayashi K	2011-09-08	J Hum Genet	Identification of independent risk loci for Graves' disease within the MHC in the Japanese population.	Graves' disease	1,119 Japanese ancestry cases, 2,718 Japanese ancestry controls	432 Japanese ancestry cases, 1,157 Japanese ancestry controls	6p22.1	MHC	rs4313034-T	0.83	2E-15		1.67	[1.47-1.90]	Perlegen [268068]	N
594	chr6_mann_hap4	1276442	1276443	rs886997	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Asthma	13,015 East Asian ancestry cases, 162,933 East Asian ancestry controls	NA	6p22.1		rs886997-T	0.201391947	2E-10		0.10704092	[0.074-0.14] unit increase	Illumina [13429513] (imputed)	N
594	chr6_mann_hap4	1276925	1276926	rs4713281	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p22.1	HLA-J, NCRNA00171	rs4713281-A	0.28	1E-6	(EA)	1.97	[1.49-2.59]	Illumina [up to 547389]	N
594	chr6_mann_hap4	1284915	1284916	rs3115631	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	ZNRD1-AS1	rs3115631-A	NR	4E-17		0.0400652	[0.031-0.049] unit decrease	Affymetrix [323858] (imputed)	N
594	chr6_mann_hap4	1284915	1284916	rs3115631	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	ZNRD1-AS1	rs3115631-A	NR	2E-16		0.0390685	[0.03-0.048] unit decrease	Affymetrix [127266] (imputed)	N
594	chr6_mann_hap4	1284915	1284916	rs3115631	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Major depressive disorder (lifetime)	16,301 British ancestry cases, 50,870 British ancestry controls	NA	6p22.1	NR	rs3115631-?	NR	4E-7		1.1037527	[1.06-1.15]	NR [5276842] (imputed)	N
594	chr6_mann_hap4	1284915	1284916	rs3115631	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Help-seeking from a GP	113,262 British ancestry cases, 219,360 British ancestry controls	NA	6p22.1	NR	rs3115631-T	0.874	3E-13		1.059322	[1.04-1.08]	NR [5276842] (imputed)	N
594	chr6_mann_hap4	1300295	1300296	rs62388754	30850646	Tziotzios C	2019-03-08	Nat Commun	Genome-wide association study in frontal fibrosing alopecia identifies four susceptibility loci including HLA-B*07:02.	Frontal fibrosing alopecia	1,016 European ancestry cases, 4,145 European ancestry controls		6p22.1	NR	rs62388754-?	0.058	5E-32		2.76	[2.33-3.27]	Illumina [~ 8000000] (imputed)	N
594	chr6_mann_hap4	1304345	1304346	rs4711207	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Allergic rhinitis	4,387 European ancestry cases, 471,273 European ancestry controls, 7,897 East Asian ancestry cases, 153,666 East Asian ancestry controls	NA	6p22.1		rs4711207-A	NR	2E-8		0.087	[0.057-0.117] unit decrease	Affymetrix, Illumina [25843170] (imputed)	N
594	chr6_mann_hap4	1304345	1304346	rs4711207	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p22.1	NR	rs4711207-A	0.366	3E-19	(IFNAR2_of_CD20p)			Illumina [5084123] (imputed)	N
594	chr6_mann_hap4	1307344	1307345	rs3910312	35232999	Garcia-Etxebarria K	2022-03-01	Sci Rep	Local genetic variation of inflammatory bowel disease in Basque population and its effect in risk prediction.	Ulcerative colitis	208 European ancestry cases, 935 European ancestry controls	NA	6p22.1		rs3910312-C	0.255	7E-7		1.8		Illumina [5409651] (imputed)	N
595	chr6_mann_hap4	1312487	1312488	rs9261224	31217265	Sliz E	2019-06-19	J Med Genet	Genome-wide association study identifies seven novel loci associating with circulating cytokines and cell adhesion molecules in Finns.	Interleukin-1-beta levels	13,577 Finnish ancestry individuals	NA	6p22.1	HLA	rs9261224-T	0.035	1E-9		0.261	unit increase	Illumina [NR] (imputed)	N
595	chr6_mann_hap4	1315679	1315680	rs6917603	31217265	Sliz E	2019-06-19	J Med Genet	Genome-wide association study identifies seven novel loci associating with circulating cytokines and cell adhesion molecules in Finns.	Interleukin-1-beta levels	13,577 Finnish ancestry individuals	NA	6p22.1	HLA	rs6917603-C	0.251	2E-12		0.163	unit decrease	Illumina [NR] (imputed)	N
595	chr6_mann_hap4	1315679	1315680	rs6917603	22286219	Kettunen J	2012-01-29	Nat Genet	Genome-wide association study identifies multiple loci influencing human serum metabolite levels.	Lipid metabolism phenotypes	8,330 European ancestry individuals	NA	6p22.1	PPP1R11	rs6917603-?	NR	3E-29	(XXL-VLDL-P)	0.24	[0.2-0.28] unit decrease	Illumina [~ 7700000] (imputed)	N
595	chr6_mann_hap4	1321678	1321679	rs9261259	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	ZNRD1-AS1	rs9261259-C	NR	2E-16		0.0319539	[0.024-0.04] unit decrease	Affymetrix [127266] (imputed)	N
595	chr6_mann_hap4	1324102	1324103	rs259919	32276964	Shete S	2020-04-10	Cancer Res	A genome-wide association study identifies two novel susceptible regions for squamous cell carcinoma of the head and neck.	Head and neck squamous cell carcinoma	2,171 European ancestry cases, 4,493 European ancestry controls	5,205 European ancestry cases, 3,232 European ancestry controls	6p22.1	ZNRD1-AS1	rs259919-A	0.28	3E-9		1.17	[1.11-1.24]	Illumina [7858089] (imputed)	N
595	chr6_mann_hap4	1324102	1324103	rs259919	20041166	Fellay J	2009-12-24	PLoS Genet	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	6p22.1	ZNRD1, C6orf12	rs259919-?	NR	3E-7	(setpoint)			Illumina [NR]	N
595	chr6_mann_hap4	1328710	1328711	rs9261269	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p22.1	ZintergenicD1	rs9261269-A		4E-32		0.038	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
595	chr6_mann_hap4	1331113	1331114	rs8321	23453885	Smoller JW	2013-02-27	Lancet	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NA	6p22.1	MHC region	rs8321-?	NR	8E-9	(5 degree of freedom test)	1.081	[1.04-1.12]	NR [1252901] (imputed)	N
595	chr6_mann_hap4	1331113	1331114	rs8321	19115949	Limou S	2009-01-01	J Infect Dis	Genomewide association study of an AIDS-nonprogression cohort emphasizes the role played by HLA genes (ANRS Genomewide Association Study 02).	AIDS progression	275 European ancestry seropositive non-progressors, 86 European ancestry seropositive rapid progressors, 1,352 European ancestry seronegative controls	(see Fellay 2007)	6p22.1	ZNRD1, RNF39	rs8321-G	NR	5E-7				Illumina [291119]	N
595	chr6_mann_hap4	1333933	1333934	rs9261281	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p22.1		rs9261281-?	NR	1E-9		0.0377761	[0.026-0.05] unit increase	Affymetrix [20259828] (imputed)	N
595	chr6_mann_hap4	1337832	1337833	rs2301753	26534935	Weng L	2015-11-03	Physiol Genomics	Genetic loci associated with nonobstructive coronary artery disease in Caucasian women.	Nonobstructive coronary artery disease	332 European ancestry female cases, 1,003 European ancestry female controls	NA	6p22.1	RNF39	rs2301753-?	0.883	7E-7		2.5	[1.75-3.57]	Illumina [52371]	N
595	chr6_mann_hap4	1338883	1338884	rs10947050	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Chickenpox	107,769 European ancestry cases, 15,982 European ancestry controls	NA	6p22.1	NR	rs10947050-?	NR	1E-10		0.0904	[0.063-0.118] unit decrease	Illumina [at least 560000] (imputed)	N
595	chr6_mann_hap4	1341592	1341593	rs142979264	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs142979264-?		6E-8		1.06	[1.04-1.09]	Illumina [7645193] (imputed)	N
595	chr6_mann_hap4	1341592	1341593	rs142979264	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs142979264-?		7E-9		1.84	[1.50-2.26]	Illumina [7645193] (imputed)	N
595	chr6_mann_hap4	1342980	1342981	rs3132682	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	6p22.1	RNF39	rs3132682-C	0.5898	2E-30		0.04162196	[0.035-0.049] unit increase	Affymetrix [~ 2500000] (imputed)	N
595	chr6_mann_hap4	1343791	1343792	rs1150735	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	RNF39	rs1150735-A	NR	5E-8		5.462	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
595	chr6_mann_hap4	1344590	1344591	rs1245372	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of linoleic acid to total fatty acids	115,006 European ancestry individuals	NA	6p22.1		rs1245372-A	0.830801	3E-8		0.029543	[0.019-0.04] unit decrease	NR [11722792] (imputed)	N
595	chr6_mann_hap4	1351534	1351535	rs1264712	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	AL669914.1	rs1264712-A	NR	9E-17		0.0323321	[0.025-0.04] unit decrease	Affymetrix [323858] (imputed)	N
595	chr6_mann_hap4	1351534	1351535	rs1264712	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p22.1	AL669914.1	rs1264712-A	NR	4E-10		0.0241409	[0.017-0.032] unit decrease	Affymetrix [323858] (imputed)	N
595	chr6_mann_hap4	1354404	1354405	rs142292417	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	6p22.1		rs142292417-T	0.984003	1E-8		0.0906224	[0.059-0.122] unit increase	NR [11722792] (imputed)	N
595	chr6_mann_hap4	1358629	1358630	rs3132681	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p22.1		rs3132681-C	0.603	1E-38				Affymetrix [10369434] (imputed)	N
595	chr6_mann_hap4	1358629	1358630	rs3132681	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	ENSG00000252901	rs3132681-A	NR	2E-8		5.598	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
595	chr6_mann_hap4	1359946	1359947	rs9261387	28394258	Wild PS	2017-04-10	J Clin Invest	Large-scale genome-wide analysis identifies genetic variants associated with cardiac structure and function.	Isovolumetric relaxation time	21,852 European ancestry individuals	14,787 European ancestry individuals	6p22.1	TRIM31	rs9261387-C	0.92	7E-7		0.003	[0.001-0.005] unit increase	Affymetrix, Illumina [at least 283291] (imputed)	N
595	chr6_mann_hap4	1362247	1362248	rs1264705	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium HDL	115,082 European ancestry individuals	NA	6p22.1		rs1264705-G	0.868792	2E-12		0.0396576	[0.029-0.051] unit increase	NR [11722792] (imputed)	N
595	chr6_mann_hap4	1363721	1363722	rs1156533	33888516	Zheng T	2021-04-22	Gut	Genome-wide analysis of 944 133 individuals provides insights into the etiology of haemorrhoidal disease.	Haemorrhoidal disease	218,920 European ancestry cases, 725,213 European ancestry controls	NA	6p22.1	TRIM31	rs1156533-?	0.2952	2E-8		0.98	[0.97-0.98]	Affymetrix, Illumina [8494288] (imputed)	N
595	chr6_mann_hap4	1364115	1364116	rs17187854	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	6p22.1	intergenic	rs17187854-T	0.0032	3E-12		0.2201749	[0.16-0.28] unit decrease	Affymetrix [~ 2500000] (imputed)	N
595	chr6_mann_hap4	1364603	1364604	rs916570	31272903	Sunadome H	2019-07-01	Allergol Int	Correlation between eosinophil count, its genetic background and body mass index: The Nagahama Study.	Eosinophil counts	4,650 East Asian ancestry individuals	NA	6p22.1	NR	rs916570-G	0.19	1E-7		0.1384	NR unit increase	Illumina [103680] (imputed)	N
595	chr6_mann_hap4	1364603	1364604	rs916570	31272903	Sunadome H	2019-07-01	Allergol Int	Correlation between eosinophil count, its genetic background and body mass index: The Nagahama Study.	Eosinophil counts	4,206 East Asian ancestry individuals	NA	6p22.1	NR	rs916570-G	0.19	3E-7		0.1428	NR unit increase	Illumina [103680] (imputed)	N
595	chr6_mann_hap4	1366128	1366129	rs1264697	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	76 Han Chinese ancestry cases, 889 Han Chinese ancestry controls	NA	6p22.1	TRIM31	rs1264697-?	NR	1E-8	(conditional on rs12110437)			Illumina [3403929] (imputed)	N
595	chr6_mann_hap4	1367173	1367174	rs13214608	33831438	Williams JE	2021-04-05	Genomics	Key genetic variants associated with variation of milk oligosaccharides from diverse human populations.	Human milk oligosaccharide concentration (lacto-N-fucopentaose III) in non-secretors	90 European, Sub-Saharan African, Hispanic or unknown ancestry individuals	NA	6p22.1		rs13214608-?	NR	3E-11				Illumina [1128286]	N
595	chr6_mann_hap4	1368541	1368542	rs1111180	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	6p22.1	TRIM31-AS1	rs1111180-C	0.5667	4E-37		0.04561007	[0.039-0.053] unit decrease	Affymetrix [~ 2500000] (imputed)	N
595	chr6_mann_hap4	1368541	1368542	rs1111180	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	6p22.1	TRIM31-AS1	rs1111180-C	0.5666	2E-35		0.04474978	[0.038-0.052] unit decrease	Affymetrix [~ 2500000] (imputed)	N
595	chr6_mann_hap4	1369496	1369497	rs1110446	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6p22.1		rs1110446-?	NR	3E-6		1.05914	[1.04-1.08]	NR [685523]	N
595	chr6_mann_hap4	1369496	1369497	rs1110446	29784950	Sawai H	2018-05-21	Sci Rep	Genome-wide association study identified new susceptible genetic variants in HLA class I region for hepatitis B virus-related hepatocellular carcinoma.	Hepatocellular carcinoma in hepatitis B infection	473 Japanese ancestry chronic hepatitis and hepatocellular carcinoma cases, 516 Japanese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma	153 Japanese ancestry chronic hepatitis and hepatocellular carcinoma cases, 614 Japanese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma, 94 Chinese ancestry chronic hepatitis and hepatocellular carcinoma cases, 187 Chinese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma, 185 Thai ancestry chronic hepatitis and hepatocellular carcinoma cases, 198 Thai ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma	6p22.1	HLA	rs1110446-?	NR	9E-13		1.93	[1.57-2.37] Japanese	Affymetrix [447830]	N
595	chr6_mann_hap4	1369496	1369497	rs1110446	29784950	Sawai H	2018-05-21	Sci Rep	Genome-wide association study identified new susceptible genetic variants in HLA class I region for hepatitis B virus-related hepatocellular carcinoma.	Hepatocellular carcinoma in hepatitis B infection	473 Japanese ancestry chronic hepatitis and hepatocellular carcinoma cases, 516 Japanese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma	153 Japanese ancestry chronic hepatitis and hepatocellular carcinoma cases, 614 Japanese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma, 94 Chinese ancestry chronic hepatitis and hepatocellular carcinoma cases, 187 Chinese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma, 185 Thai ancestry chronic hepatitis and hepatocellular carcinoma cases, 198 Thai ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma	6p22.1	HLA	rs1110446-?	NR	3E-10	(Japanese)	1.93	[1.57-2.37]	Affymetrix [447830]	N
595	chr6_mann_hap4	1369889	1369890	rs1116221	32771030	Tangtanatakul P	2020-08-08	Arthritis Res Ther	Meta-analysis of genome-wide association study identifies FBN2 as a novel locus associated with systemic lupus erythematosus in Thai population.	Systemic lupus erythematosus	487 Thai cases, 1,606 Thai controls	405 Thai cases, 1,590 Thai controls	6p22.1	TRIM31	rs1116221-A	0.08	3E-6		1.594	[NR]	Illumina [421909] (imputed)	N
595	chr6_mann_hap4	1371184	1371185	rs3094136	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p22.1	NR	rs3094136-C	0.44	2E-6	(IFNAR2_of_CD4p_T)			Illumina [5084123] (imputed)	N
595	chr6_mann_hap4	1371367	1371368	rs111537560	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mumps	31,227 European ancestry cases, 54,153 European ancestry controls	NA	6p22.1	NR	rs111537560-?	NR	5E-16		0.5917	[0.45-0.74] unit increase	Illumina [at least 560000] (imputed)	N
595	chr6_mann_hap4	1371754	1371755	rs3132680	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6p22.1	RNF39	rs3132680-?	NR	7E-6	(SM 18:0)	0.17183183	[0.097-0.247] unit decrease	Affymetrix [at least 2500000] (imputed)	N
595	chr6_mann_hap4	1371818	1371819	rs2517664	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p22.1		rs2517664-T	0.816537	9E-13		1.0407012	[1.03-1.05]	Affymetrix, Illumina [9851866] (imputed)	N
595	chr6_mann_hap4	1371818	1371819	rs2517664	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	TRIM31-AS1	rs2517664-T	NR	1E-8		5.707	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
595	chr6_mann_hap4	1371989	1371990	rs6915823	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	6p22.1	NR	rs6915823-?	NR	1E-23		10.046	NR z score decrease	Illumina [at least 830937] (imputed)	N
595	chr6_mann_hap4	1372335	1372336	rs7767188	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	6p22.1	NR	rs7767188-A	0.21	2E-8		1.06	[1.04-1.08]	Illumina [20370935] (imputed)	N
595	chr6_mann_hap4	1372406	1372407	rs2844795	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total phospholipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	6p22.1		rs2844795-C	0.480583	2E-9		0.0234643	[0.016-0.031] unit decrease	NR [11722792] (imputed)	N
595	chr6_mann_hap4	1372406	1372407	rs2844795	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	6p22.1		rs2844795-C	0.480583	2E-9		0.0242799	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
595	chr6_mann_hap4	1372406	1372407	rs2844795	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total fatty acid levels	115,006 European ancestry individuals	NA	6p22.1		rs2844795-C	0.480588	2E-9		0.0242374	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
595	chr6_mann_hap4	1372406	1372407	rs2844795	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholines levels	115,006 European ancestry individuals	NA	6p22.1		rs2844795-C	0.480588	6E-9		0.0224748	[0.015-0.03] unit decrease	NR [11722792] (imputed)	N
595	chr6_mann_hap4	1372406	1372407	rs2844795	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-6 fatty acid levels	115,006 European ancestry individuals	NA	6p22.1		rs2844795-C	0.480588	5E-13		0.0289827	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
595	chr6_mann_hap4	1372406	1372407	rs2844795	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Linoleic acid levels	115,006 European ancestry individuals	NA	6p22.1		rs2844795-C	0.480588	4E-14		0.0305085	[0.023-0.038] unit decrease	NR [11722792] (imputed)	N
595	chr6_mann_hap4	1372406	1372407	rs2844795	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	6p22.1		rs2844795-C	0.480583	3E-8		0.0227871	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
595	chr6_mann_hap4	1372631	1372632	rs2517601	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in diabetes	70,762 European ancestry individuals, 20,967 African American individuals	NA	6p22.1	TRIM31	rs2517601-C	0.115	4E-12		0.956	[0.69-1.23] unit decrease	Affymetrix [NR] (imputed)	N
595	chr6_mann_hap4	1372631	1372632	rs2517601	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p22.1	NR	rs2517601-C	0.1326	5E-13		0.0126	[0.0093-0.0159] unit decrease	NR [7666894] (imputed)	N
595	chr6_mann_hap4	1372869	1372870	rs78026509	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	6p22.1	TRIM31, TRIM31-AS1	rs78026509-G	0.0759	2E-9		0.04028003	[0.027-0.053] unit decrease	Affymetrix [~ 2500000] (imputed)	N
595	chr6_mann_hap4	1373662	1373663	rs2523992	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p22.1	NR	rs2523992-G	0.1571	2E-7	(EA)	0.0468	[0.029-0.064] unit decrease	Illumina [~ 11800000] (imputed)	N
595	chr6_mann_hap4	1374424	1374425	rs2023472	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p22.1		rs2023472-A	0.411	6E-25				Affymetrix [10369434] (imputed)	N
595	chr6_mann_hap4	1374424	1374425	rs2023472	23417110	Tin A	2013-02-16	Hum Genet	Genome-wide association study identified the human leukocyte antigen region as a novel locus for plasma beta-2 microglobulin.	Beta-2 microglubulin plasma levels	6,728 European ancestry individuals		6p22.1	TRIM31	rs2023472-A	0.38	3E-15		0.03	[0.022-0.038] unit increase	Affymetrix [2500000] (imputed)	N
595	chr6_mann_hap4	1374677	1374678	rs11961190	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	6p22.1	TRIM31, TRIM31-AS1	rs11961190-T	0.00312500000000004	2E-22		0.19694449	[0.16-0.24] unit decrease	Affymetrix [93095623] (imputed)	N
595	chr6_mann_hap4	1374677	1374678	rs11961190	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6p22.1	TRIM31, TRIM31-AS1	rs11961190-T	0.00312500000000004	1E-23		0.20271449	[0.16-0.24] unit decrease	Affymetrix [93095623] (imputed)	N
595	chr6_mann_hap4	1374677	1374678	rs11961190	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	6p22.1	TRIM31, TRIM31-AS1	rs11961190-T	0.00311799999999995	3E-29		0.22552978	[0.19-0.26] unit decrease	Affymetrix [93095623] (imputed)	N
595	chr6_mann_hap4	1374677	1374678	rs11961190	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6p22.1	TRIM31, TRIM31-AS1	rs11961190-T	0.00311700000000004	4E-27		0.21662813	[0.18-0.26] unit decrease	Affymetrix [93095623] (imputed)	N
595	chr6_mann_hap4	1375214	1375215	rs9261418	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	6p22.1	TRIM15	rs9261418-A	0.144604	2E-8		5.61	z score increase	NR [10847151] (imputed)	N
595	chr6_mann_hap4	1375689	1375690	rs9378220	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	6p22.1	TRIM31	rs9378220-?	NR	4E-18		0.0309	[0.025-0.037] unit increase	Affymetrix [5701386] (imputed)	N
595	chr6_mann_hap4	1375783	1375784	rs2523990	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	6p22.1	TRIM31, TRIM31-AS1	rs2523990-G	0.538375	2E-32		0.029605733	[0.025-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
595	chr6_mann_hap4	1375783	1375784	rs2523990	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6p22.1	TRIM31, TRIM31-AS1	rs2523990-G	0.538376	5E-71		0.044279587	[0.039-0.049] unit decrease	Affymetrix [93095623] (imputed)	N
595	chr6_mann_hap4	1376828	1376829	rs2523989	33909500	Moll M	2021-04-28	Am J Physiol Lung Cell Mol Physiol	A Systematic Analysis of Protein-altering Exonic Variants in Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease	up to 31,465 European ancestry cases, up to 203,688 European ancestry controls, up to 1,413 African ancestry cases, up to 6,080 African ancestry controls, up to 287 East Asian ancestry cases, up to 7,484 East Asian ancestry controls, up to 61 Hispanic cases, up to 613 Hispanic controls	NA	6p22.1	TRIM31	rs2523989-T	0.17	1E-10		1.09	[1.06 -1.12]	Illumina [at least 109036]	N
595	chr6_mann_hap4	1376828	1376829	rs2523989	25936594	Tomer Y	2015-04-27	J Autoimmun	Genome wide identification of new genes and pathways in patients with both autoimmune thyroiditis and type 1 diabetes.	Type 1 diabetes and autoimmune thyroid diseases	346 European ancestry cases, 727 European ancestry controls	185 European ancestry cases, 340 European ancestry controls	6p22.1	TRIM31	rs2523989-A	NR	2E-8		1.7499		Illumina [514008]	N
595	chr6_mann_hap4	1378545	1378546	rs2523987	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p22.1	TRIM31, TRIM31-AS1, TRIM40, SNORA48	rs2523987-C	0.1149598	2E-13	(EA, MHC class I polypeptide-related sequence A)	0.4957	[0.36-0.63] unit increase	Affymetrix [509946]	N
595	chr6_mann_hap4	1379660	1379661	rs9261425	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	6p22.1	NR	rs9261425-?	NR	6E-7		0.0545	[0.033-0.076] unit increase	Illumina [at least 560000] (imputed)	N
595	chr6_mann_hap4	1380294	1380295	rs28780084	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p22.1	NR	rs28780084-?	NR	9E-8		0.0841	[0.053-0.115] unit decrease	Illumina [at least 560000] (imputed)	N
595	chr6_mann_hap4	1382260	1382261	rs2523978	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	6p22.1	TRIM31	rs2523978-C	0.869967	4E-24		0.0286531	[0.023-0.034] unit increase	Affymetrix [NR] (imputed)	N
595	chr6_mann_hap4	1382260	1382261	rs2523978	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	6p22.1	TRIM31	rs2523978-C	0.869885	7E-28		0.031888	[0.026-0.038] unit increase	Affymetrix [NR] (imputed)	N
595	chr6_mann_hap4	1384974	1384975	rs9261431	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p22.1	NR	rs9261431-?	NR	2E-19		0.1221	[0.095-0.149] unit increase	Illumina [at least 560000] (imputed)	N
595	chr6_mann_hap4	1386161	1386162	rs115254023	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6p22.1		rs115254023-T	0.018886	8E-29		0.092888236	[0.077-0.109] unit increase	Affymetrix [93095623] (imputed)	N
595	chr6_mann_hap4	1441494	1441495	rs1419674	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p22.1	NR	rs1419674-T	0.02787	7E-9	(SBDS)	0.03953	NR unit increase	Illumina [1671387] (imputed)	N
595	chr6_mann_hap4	1441696	1441697	rs2517592	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	SNORA48	rs2517592-T	NR	5E-8		5.465	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
596	chr6_mann_hap4	1441923	1441924	rs10947055	21348951	Parsa A	2011-02-01	Clin Transl Sci	Hypertrophy-associated polymorphisms ascertained in a founder cohort applied to heart failure risk and mortality.	Cardiac hypertrophy	851 Old Order Amish individuals	NA	6p22.1	TRIM38	rs10947055-?	NR	2E-7	(additive, recessive)			Affymetrix [361034]	N
596	chr6_mann_hap4	1442672	1442673	rs2844790	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	SNORA48	rs2844790-C	NR	4E-10		6.271	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
596	chr6_mann_hap4	1442672	1442673	rs2844790	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p22.1	NR	rs2844790-?	NR	1E-8		0.1888	[0.12-0.25] unit increase	Illumina [at least 560000] (imputed)	N
596	chr6_mann_hap4	1449535	1449536	rs61211515	29404672	Roshandel D	2018-02-05	Diabetologia	Meta-genome-wide association studies identify a locus on chromosome 1 and multiple variants in the MHC region for serum C-peptide in type 1 diabetes.	Stimulated C-peptide levels in type I diabetes	1,303 European ancestry individuals	NA	6p22.1	MHC	rs61211515-?	0.16	1E-7		0.39	[0.25-0.53] unit decrease	Illumina [8978838] (imputed)	N
596	chr6_mann_hap4	1449535	1449536	rs61211515	29404672	Roshandel D	2018-02-05	Diabetologia	Meta-genome-wide association studies identify a locus on chromosome 1 and multiple variants in the MHC region for serum C-peptide in type 1 diabetes.	C-peptide levels in type I diabetes	3,479 European ancestry individuals	NA	6p22.1	MHC	rs61211515-?	0.16	2E-6				Illumina [7988630] (imputed)	N
596	chr6_mann_hap4	1450124	1450125	rs115333019	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	6p22.1	SNORA48, TRIM40	rs115333019-G	0.00916799999999995	8E-43		0.1634603	[0.14-0.19] unit decrease	Affymetrix [93095623] (imputed)	N
596	chr6_mann_hap4	1450215	1450216	rs1362104	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	SNORA48	rs1362104-A	NR	2E-10		6.398	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
596	chr6_mann_hap4	1453718	1453719	rs28780086	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	6p22.1	TRIM40	rs28780086-G	0.023328	1E-25		0.078185886	[0.064-0.093] unit increase	Affymetrix [93095623] (imputed)	N
596	chr6_mann_hap4	1453718	1453719	rs28780086	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	6p22.1	TRIM40	rs28780086-G	0.023332	8E-30		0.093978085	[0.078-0.11] unit decrease	Affymetrix [93095623] (imputed)	N
596	chr6_mann_hap4	1457247	1457248	rs9261484	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	6p22.1	TRIM40	rs9261484-T	0.2451	2E-8		0.0635	[0.042-0.085] unit decrease	NR [7784415] (imputed)	N
596	chr6_mann_hap4	1459423	1459423	rs146464922	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	6p22.1	TRIM40	rs146464922-CTT	0.014425	8E-11		0.05988576	[0.042-0.078] unit increase	Affymetrix [93095623] (imputed)	N
596	chr6_mann_hap4	1459635	1459636	rs117432766	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6p22.1	TRIM40	rs117432766-A	0.016714	1E-25		0.09170394	[0.075-0.109] unit increase	Affymetrix [93095623] (imputed)	N
596	chr6_mann_hap4	1462114	1462115	rs12202131	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6p22.1	TRIM40	rs12202131-A	0.052983	2E-12		0.06297606	[0.045-0.081] unit increase	Affymetrix [93095623] (imputed)	N
596	chr6_mann_hap4	1462519	1462520	rs3815082	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p22.1	NR	rs3815082-G	0.295	9E-12	(IFNAR2_of_CD20p)			Illumina [5084123] (imputed)	N
596	chr6_mann_hap4	1462871	1462872	rs2256146	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p22.1	NR	rs2256146-C	0.02787	7E-9	(SBDS)	0.03953	NR unit increase	Illumina [1671387] (imputed)	N
596	chr6_mann_hap4	1463884	1463885	rs115651142	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p22.1	NR	rs115651142-?	NR	6E-7		0.324	[0.19-0.45] unit decrease	Illumina [at least 560000] (imputed)	N
596	chr6_mann_hap4	1468454	1468455	rs9468692	20041166	Fellay J	2009-12-24	PLoS Genet	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	6p22.1	TRIM10	rs9468692-?	NR	1E-6	(setpoint)			Illumina [NR]	N
596	chr6_mann_hap4	1469201	1469202	rs9468693	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	6p22.1	TRIM10	rs9468693-C	0.071694	2E-29		0.0510031	[0.043-0.059] unit decrease	Affymetrix [93095623] (imputed)	N
596	chr6_mann_hap4	1470024	1470025	rs2022065	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	6p22.1	TRIM10	rs2022065-T	0.296544	2E-49		0.041531093	[0.036-0.047] unit decrease	Affymetrix [93095623] (imputed)	N
596	chr6_mann_hap4	1470024	1470025	rs2022065	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6p22.1	TRIM10	rs2022065-T	0.296544	4E-41		0.041549113	[0.035-0.048] unit decrease	Affymetrix [93095623] (imputed)	N
596	chr6_mann_hap4	1470024	1470025	rs2022065	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	6p22.1	TRIM10	rs2022065-T	0.296537	4E-62		0.05393633	[0.048-0.06] unit decrease	Affymetrix [93095623] (imputed)	N
596	chr6_mann_hap4	1470024	1470025	rs2022065	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	6p22.1	TRIM10	rs2022065-T	0.2963	3E-25		0.04064069	[0.033-0.048] unit decrease	Affymetrix [~ 2500000] (imputed)	N
596	chr6_mann_hap4	1470024	1470025	rs2022065	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	6p22.1	TRIM10	rs2022065-T	0.2963	1E-23		0.03931364	[0.032-0.047] unit decrease	Affymetrix [~ 2500000] (imputed)	N
596	chr6_mann_hap4	1470024	1470025	rs2022065	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	6p22.1	TRIM10	rs2022065-T	0.2963	3E-30		0.04433495	[0.037-0.052] unit decrease	Affymetrix [~ 2500000] (imputed)	N
596	chr6_mann_hap4	1470024	1470025	rs2022065	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	6p22.1	TRIM10	rs2022065-T	0.2962	2E-35		0.04860256	[0.041-0.056] unit decrease	Affymetrix [~ 2500000] (imputed)	N
596	chr6_mann_hap4	1470024	1470025	rs2022065	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	6p22.1	TRIM10	rs2022065-T	0.2962	1E-34		0.04804721	[0.04-0.056] unit decrease	Affymetrix [~ 2500000] (imputed)	N
596	chr6_mann_hap4	1470957	1470958	rs116596081	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	6p22.1	TRIM10	rs116596081-A	0.011844	3E-46		0.14981039	[0.13-0.17] unit decrease	Affymetrix [93095623] (imputed)	N
596	chr6_mann_hap4	1470957	1470958	rs116596081	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6p22.1	TRIM10	rs116596081-A	0.0118470000000001	6E-38		0.13759963	[0.12-0.16] unit decrease	Affymetrix [93095623] (imputed)	N
596	chr6_mann_hap4	1473375	1473376	rs144731721	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Red cell distribution width	441,263 European ancestry individuals	NA	6p22.1		rs144731721-?	NR	1E-14		0.080611	[0.059-0.102] unit increase	NR [9800000] (imputed)	N
596	chr6_mann_hap4	1473375	1473376	rs144731721	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean reticulocyte volume	436,944 European ancestry individuals	NA	6p22.1		rs144731721-?	NR	1E-42		0.142474	[0.12-0.16] unit increase	NR [9800000] (imputed)	N
596	chr6_mann_hap4	1473375	1473376	rs144731721	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	6p22.1	TRIM10	rs144731721-T	0.00866500000000004	5E-16		0.096417926	[0.073-0.12] unit increase	Affymetrix [93095623] (imputed)	N
596	chr6_mann_hap4	1473375	1473376	rs144731721	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	6p22.1	TRIM10	rs144731721-T	0.00867700000000005	2E-39		0.15744652	[0.13-0.18] unit increase	Affymetrix [93095623] (imputed)	N
596	chr6_mann_hap4	1473375	1473376	rs144731721	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	6p22.1	TRIM10	rs144731721-T	0.00866699999999998	6E-12		0.083550446	[0.06-0.107] unit increase	Affymetrix [93095623] (imputed)	N
596	chr6_mann_hap4	1473375	1473376	rs144731721	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	6p22.1	TRIM10	rs144731721-T	0.0068	4E-11		0.1617919	[0.11-0.21] unit increase	Affymetrix [~ 2500000] (imputed)	N
596	chr6_mann_hap4	1475185	1475186	rs116113631	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	6p22.1	TRIM10	rs116113631-T	0.010294	3E-68		0.19197759	[0.17-0.21] unit decrease	Affymetrix [93095623] (imputed)	N
596	chr6_mann_hap4	1475185	1475186	rs116113631	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6p22.1	TRIM10	rs116113631-T	0.010297	3E-66		0.19043158	[0.17-0.21] unit decrease	Affymetrix [93095623] (imputed)	N
596	chr6_mann_hap4	1476122	1476122	rs148280884	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	6p22.1	TRIM10	rs148280884-CAT	0.0122	4E-25		0.1718773	[0.14-0.2] unit decrease	Affymetrix [~ 2500000] (imputed)	N
596	chr6_mann_hap4	1476122	1476122	rs148280884	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	6p22.1	TRIM10	rs148280884-CAT	0.0122	2E-27		0.1797411	[0.15-0.21] unit decrease	Affymetrix [~ 2500000] (imputed)	N
596	chr6_mann_hap4	1476122	1476122	rs148280884	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	6p22.1	TRIM10	rs148280884-CAT	0.0122	2E-23		0.1655507	[0.13-0.2] unit decrease	Affymetrix [~ 2500000] (imputed)	N
596	chr6_mann_hap4	1476122	1476122	rs148280884	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	6p22.1	TRIM10	rs148280884-CAT	0.0122	6E-25		0.1707215	[0.14-0.2] unit decrease	Affymetrix [~ 2500000] (imputed)	N
596	chr6_mann_hap4	1476368	1476369	rs1573296	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	6p22.1	TRIM10	rs1573296-G	0.1349	2E-11		0.03526502	[0.025-0.046] unit decrease	Affymetrix [~ 2500000] (imputed)	N
596	chr6_mann_hap4	1476368	1476369	rs1573296	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	6p22.1	TRIM10	rs1573296-G	0.1349	1E-14		0.04046172	[0.03-0.051] unit decrease	Affymetrix [~ 2500000] (imputed)	N
596	chr6_mann_hap4	1476436	1476437	rs1318638	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	6p22.1	TRIM10	rs1318638-T	0.0648	3E-9		0.04268956	[0.029-0.057] unit increase	Affymetrix [~ 2500000] (imputed)	N
596	chr6_mann_hap4	1476436	1476437	rs1318638	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin concentration	172,851 European ancestry individuals	NA	6p22.1	TRIM10	rs1318638-T	0.0649	1E-20		0.06542649	[0.052-0.079] unit decrease	Affymetrix [~ 2500000] (imputed)	N
596	chr6_mann_hap4	1476666	1476667	rs142460927	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	6p22.1	TRIM10	rs142460927-C	0.00303299999999995	5E-25		0.21333578	[0.17-0.25] unit decrease	Affymetrix [93095623] (imputed)	N
596	chr6_mann_hap4	1477005	1477006	rs12212092	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	6p22.1	TRIM10	rs12212092-T	0.0644400000000001	6E-20		0.043098915	[0.034-0.052] unit decrease	Affymetrix [93095623] (imputed)	N
596	chr6_mann_hap4	1477005	1477006	rs12212092	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	6p22.1	TRIM10	rs12212092-T	0.06443	7E-84		0.096261576	[0.087-0.106] unit decrease	Affymetrix [93095623] (imputed)	N
596	chr6_mann_hap4	1477005	1477006	rs12212092	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	6p22.1	TRIM10	rs12212092-T	0.064469	1E-29		0.051481474	[0.043-0.06] unit decrease	Affymetrix [93095623] (imputed)	N
596	chr6_mann_hap4	1477005	1477006	rs12212092	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6p22.1	TRIM10	rs12212092-T	0.064468	1E-30		0.09085926	[0.075-0.106] unit decrease	Affymetrix [93095623] (imputed)	N
596	chr6_mann_hap4	1477005	1477006	rs12212092	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	6p22.1	TRIM10	rs12212092-T	0.0648	1E-24		0.07379727	[0.06-0.088] unit decrease	Affymetrix [~ 2500000] (imputed)	N
596	chr6_mann_hap4	1477005	1477006	rs12212092	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	6p22.1	TRIM10	rs12212092-T	0.0648	8E-24		0.07307307	[0.059-0.087] unit decrease	Affymetrix [~ 2500000] (imputed)	N
596	chr6_mann_hap4	1477005	1477006	rs12212092	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	6p22.1	TRIM10	rs12212092-T	0.0648	3E-24		0.07368067	[0.059-0.088] unit decrease	Affymetrix [~ 2500000] (imputed)	N
596	chr6_mann_hap4	1479667	1479668	rs17188113	29562276	Venkateswaran S	2018-03-01	Inflamm Bowel Dis	Enhanced Contribution of HLA in Pediatric Onset Ulcerative Colitis.	Childhood onset ulcerative colitis	466 European ancestry cases, 2,099 European ancestry controls	NA	6p22.1	HLA	rs17188113-?		9E-7		1.8086454	[1.57-2.05]	Affymetrix [3996700] (imputed)	N
596	chr6_mann_hap4	1480255	1480256	rs17194474	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	6p22.1	TRIM15	rs17194474-C	0.028724	4E-18		0.055055395	[0.043-0.067] unit decrease	Affymetrix [93095623] (imputed)	N
596	chr6_mann_hap4	1484521	1484522	rs9368624	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p22.1	TRIM15, TRIM10, TRIM40, TRIM31-AS1, TRIM31, TRIM26, PAIP1P1	rs9368624-A	0.1996982	3E-11	(EA, MHC class I polypeptide-related sequence A)	0.3704	[0.26-0.48] unit decrease	Affymetrix [509946]	N
596	chr6_mann_hap4	1486193	1486194	rs1018846	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	6p22.1	TRIM15	rs1018846-A	0.064503	4E-25		0.046360865	[0.038-0.055] unit increase	Affymetrix [93095623] (imputed)	N
596	chr6_mann_hap4	1486410	1486411	rs2107195	30037793	Haapasalo K	2018-09-21	Infect Immun	The Psoriasis Risk Allele <i>HLA-C*06:02</i> Shows Evidence of Association with Chronic or Recurrent Streptococcal Tonsillitis.	Tonsillitis	95 Finnish cases, 504 Finnish controls	NA	6p22.1	TRIM10, TRIM15	rs2107195-?		5E-6		3.7		Illumina [100000]	N
596	chr6_mann_hap4	1486706	1486707	rs1029239	34642315	Ferreiro-Iglesias A	2021-10-12	Nat Commun	Germline determinants of humoral immune response to HPV-16 protect against oropharyngeal cancer.	Human papilloma virus 16 positive oropharyngeal cancer	1,078 European ancestry cases, 5,256 European ancestry controls	NA	6p22.1		rs1029239-G	NR	3E-6		1.2904		Illumina [7574753] (imputed)	N
596	chr6_mann_hap4	1487189	1487190	rs1029238	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	6p22.1	TRIM15	rs1029238-A	0.089377	4E-11		0.025450304	[0.018-0.033] unit increase	Affymetrix [93095623] (imputed)	N
596	chr6_mann_hap4	1488243	1488244	rs929156	33909500	Moll M	2021-04-28	Am J Physiol Lung Cell Mol Physiol	A Systematic Analysis of Protein-altering Exonic Variants in Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease	up to 31,465 European ancestry cases, up to 203,688 European ancestry controls, up to 1,413 African ancestry cases, up to 6,080 African ancestry controls, up to 287 East Asian ancestry cases, up to 7,484 East Asian ancestry controls, up to 61 Hispanic cases, up to 613 Hispanic controls	NA	6p22.1	TRIM15	rs929156-G	0.76	8E-8		1.06	[1.04 -1.09]	Illumina [at least 109036]	N
596	chr6_mann_hap4	1501861	1501862	rs2106072	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p22.1	NR	rs2106072-A	0.13	3E-10		1.11	[1.08-1.15]	Affymetrix [9886854] (imputed)	N
596	chr6_mann_hap4	1501861	1501862	rs2106072	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p22.1	NR	rs2106072-A	0.13	9E-13			[NR]	Affymetrix [9886854] (imputed)	N
596	chr6_mann_hap4	1501861	1501862	rs2106072	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in non-current smokers	16,488 European ancestry cases, 169,688 European ancestry controls	NA	6p22.1	NR	rs2106072-A	0.13	3E-10		1.12	[1.08-1.15]	Affymetrix [9886854] (imputed)	N
596	chr6_mann_hap4	1503649	1503650	rs2517622	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Proheparin-binding EGF-like growth factor levels	21,758 European ancestry individuals	9,173 individuals	6p22.1		rs2517622-C	0.11	1E-9		0.0845	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
596	chr6_mann_hap4	1503649	1503650	rs2517622	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Help-seeking from a psychiatrist	36,286 British ancestry cases, 297,126 British ancestry controls	NA	6p22.1	NR	rs2517622-G	0.863	4E-11		1.0799136	NR	NR [5276842] (imputed)	N
596	chr6_mann_hap4	1503649	1503650	rs2517622	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Help-seeking from a GP (without major depressive disorder symptoms)	8,632 British ancestry cases, 49,493 British ancestry controls	NA	6p22.1	NR	rs2517622-?	NR	3E-6		1.1223345	[1.07-1.18]	NR [5276842] (imputed)	N
596	chr6_mann_hap4	1513771	1513772	rs2523722	22883433	Irish Schizophrenia Genomics Consortium and the Wellcome Trust Case Control Consortium 2	2012-08-07	Biol Psychiatry	Genome-wide association study implicates HLA-C*01:02 as a risk factor at the major histocompatibility complex locus in schizophrenia.	Schizophrenia	1,606 European ancestry cases, 1,794 European ancestry controls	13,195 European ancestry cases, 31,021 European ancestry controls	6p22.1	MHC, TRIM26	rs2523722-G	0.737	1E-16		1.25	[1.12-1.39]	Affymetrix [6212339]	N
596	chr6_mann_hap4	1515384	1515385	rs2523720	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p22.1		rs2523720-C	0.836	9E-50				Affymetrix [10369434] (imputed)	N
596	chr6_mann_hap4	1516332	1516333	rs2428503	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	TRIM26	rs2428503-T	NR	2E-9		0.0221273	[0.015-0.029] unit decrease	Affymetrix [127266] (imputed)	N
596	chr6_mann_hap4	1516816	1516817	rs2523719	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	6p22.1	TRIM26	rs2523719-G	0.830078	2E-21		0.0245541	[0.019-0.03] unit increase	Affymetrix [NR] (imputed)	N
596	chr6_mann_hap4	1517824	1517825	rs2517611	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (anti-inflammatory and antirheumatic products, non-steroids)	74,150 European ancestry cases, 90,370 European ancestry controls, 29,694 East Asian ancestry cases, 149,032 East Asian ancestry controls	NA	6p22.1		rs2517611-G	NR	2E-9		0.0422	[0.028-0.056] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
596	chr6_mann_hap4	1517824	1517825	rs2517611	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Asthma	38,369 European ancestry cases, 411,131 European ancestry controls, 13,015 East Asian ancestry cases, 162,933 East Asian ancestry controls	NA	6p22.1		rs2517611-G	NR	3E-11		0.0613	[0.043-0.079] unit increase	Affymetrix, Illumina [25837673] (imputed)	N
596	chr6_mann_hap4	1517824	1517825	rs2517611	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (anti-inflammatory and antirheumatic products, non-steroids)	74,150 European ancestry cases, 90,370 European ancestry controls	NA	6p22.1	TRIM26	rs2517611-G	0.229963	7E-10		0.050484303	[0.034-0.067] unit decrease	Affymetrix [7288503] (imputed)	N
596	chr6_mann_hap4	1519006	1519007	rs1117490	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (childhood onset)	9,433 British ancestry cases, 318,237 British ancestry controls	NA	6p22.1	TRIM26, TRIM15, TRIM39	rs1117490-C	0.234	3E-8		1.1	[1.063-1.137]	Affymetrix [10894596] (imputed)	N
596	chr6_mann_hap4	1519006	1519007	rs1117490	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (adult onset)	21,564 British ancestry cases, 318,237 British ancestry controls	NA	6p22.1	TRIM26, TRIM15, TRIM39	rs1117490-C	0.234	7E-7		1.059	[1.036-1.084]	Affymetrix [10894596] (imputed)	N
596	chr6_mann_hap4	1527919	1527920	rs2844775	24489884	Mick E	2014-01-01	PLoS One	Genome-wide association study of proneness to anger.	Anger	8,747 European ancestry individuals	NA	6p22.1	TRIM31, TRIM10, PPP1R11, TRIM40, TRIM15, HLA-A29.1, TRIM26, HCG9, ZNRD1, RNF39	rs2844775-A	0.25	8E-7	(Temperament)	0.15	[NR] unit decrease	Affymetrix [677643]	N
596	chr6_mann_hap4	1530378	1530379	rs2188100	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p22.1	NR	rs2188100-A	0.16	5E-11		1.15	[1.1-1.2]	Affymetrix [9886854] (imputed)	N
596	chr6_mann_hap4	1530378	1530379	rs2188100	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p22.1	NR	rs2188100-A	0.16	5E-14			[NR]	Affymetrix [9886854] (imputed)	N
596	chr6_mann_hap4	1530378	1530379	rs2188100	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in never smokers	8,631 European ancestry cases, 120,544 European ancestry controls	NA	6p22.1	NR	rs2188100-A	0.16	2E-11		1.15	[1.11-1.2]	Affymetrix [9886854] (imputed)	N
596	chr6_mann_hap4	1530890	1530891	rs1345229	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	6p22.1	TRIM26	rs1345229-A	0.085649	1E-9		0.023856346	[0.016-0.032] unit increase	Affymetrix [93095623] (imputed)	N
596	chr6_mann_hap4	1535172	1535173	rs9380159	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p22.1	NR	rs9380159-?	NR	8E-13		0.1064	[0.077-0.136] unit decrease	Illumina [at least 560000] (imputed)	N
596	chr6_mann_hap4	1538522	1538523	rs2517602	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	TRIM26	rs2517602-T	NR	1E-9		6.068	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
596	chr6_mann_hap4	1539613	1539613	rs72031595	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	6p22.1		rs72031595-CT	0.551943	5E-9		0.014966801	[0.01-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
596	chr6_mann_hap4	1548927	1548928	rs5875247	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	6p22.1	HCG17	rs5875247-C	0.465286	6E-14		0.017951211	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
596	chr6_mann_hap4	1549360	1549361	rs3094137	29784950	Sawai H	2018-05-21	Sci Rep	Genome-wide association study identified new susceptible genetic variants in HLA class I region for hepatitis B virus-related hepatocellular carcinoma.	Hepatocellular carcinoma in hepatitis B infection	473 Japanese ancestry chronic hepatitis and hepatocellular carcinoma cases, 516 Japanese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma	153 Japanese ancestry chronic hepatitis and hepatocellular carcinoma cases, 614 Japanese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma, 94 Chinese ancestry chronic hepatitis and hepatocellular carcinoma cases, 187 Chinese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma, 185 Thai ancestry chronic hepatitis and hepatocellular carcinoma cases, 198 Thai ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma	6p22.1	HLA	rs3094137-?	NR	4E-7	(Japanese)	1.76	[1.41-2.19]	Affymetrix [447830]	N
596	chr6_mann_hap4	1551058	1551059	rs885916	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	HCG17	rs885916-T	NR	1E-11		6.793	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
596	chr6_mann_hap4	1563454	1563455	rs9391803	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	6p22.1	TRIM26	rs9391803-T	0.852467	2E-19		0.0266262	[0.021-0.032] unit decrease	Affymetrix [NR] (imputed)	N
596	chr6_mann_hap4	1565428	1565429	rs9261608	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6p22.1		rs9261608-T	0.858197	3E-8		0.0330532	[0.021-0.045] unit increase	NR [11722792] (imputed)	N
596	chr6_mann_hap4	1571504	1571505	rs2189373	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	HCG17	rs2189373-T	NR	8E-10		0.0232455	[0.016-0.031] unit decrease	Affymetrix [323858] (imputed)	N
596	chr6_mann_hap4	1571504	1571505	rs2189373	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	HCG17	rs2189373-T	NR	5E-9		5.835	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
596	chr6_mann_hap4	1571589	1571590	rs2187980	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	6p22.1		rs2187980-A	0.855994	2E-8		0.0328244	[0.021-0.044] unit increase	NR [11722792] (imputed)	N
597	chr6_mann_hap4	1573047	1573048	rs3094078	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	6p22.1	HCG17	rs3094078-?	NR	2E-15		0.0305	[0.024-0.037] unit decrease	Affymetrix [5701386] (imputed)	N
597	chr6_mann_hap4	1573047	1573048	rs3094078	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA	6p22.1	NR	rs3094078-?	NR	8E-6		0.0526	[0.029-0.076] unit increase	Illumina [at least 560000] (imputed)	N
597	chr6_mann_hap4	1575222	1575223	rs185780876	32185793	Yan J	2020-03-17	Clin Genet	A genome-wide association study identifies FSHR rs2300441 associated with follicle-stimulating hormone levels.	Luteinizing hormone levels in healthy women	720 Han Chinese ancestry individuals	NA	6p22.1	NR	rs185780876-?	NR	4E-7				Affymetrix [3101376] (imputed)	N
597	chr6_mann_hap4	1577384	1577385	rs2428507	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	HLA-L, HCG17	rs2428507-A	NR	4E-9		5.893	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
597	chr6_mann_hap4	1578000	1578001	rs2516703	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p22.1	HCG17	rs2516703-G	NR	1E-6		0.0184109	[0.011-0.026] unit decrease	Illumina [13520550] (imputed)	N
597	chr6_mann_hap4	1578000	1578001	rs2516703	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	6p22.1	HCG17	rs2516703-G	NR	1E-10		0.0283809	[0.02-0.037] unit decrease	Illumina [13520550] (imputed)	N
597	chr6_mann_hap4	1578597	1578597	rs201471471	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	6p22.1	NR	rs201471471-?	NR	3E-7		0.0808	[0.05-0.112] unit increase	Illumina [at least 560000] (imputed)	N
597	chr6_mann_hap4	1580589	1580590	rs2516697	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	HCG17, HLA-L	rs2516697-A	NR	1E-8		0.0194794	[0.013-0.026] unit decrease	Affymetrix [321016] (imputed)	N
597	chr6_mann_hap4	1589601	1589602	rs28894080	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p22.1	NR	rs28894080-?	NR	1E-8		0.1082	[0.071-0.145] unit increase	Illumina [at least 560000] (imputed)	N
597	chr6_mann_hap4	1605022	1605023	rs1264622	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	HCG17, HLA-L, HCG18	rs1264622-T	NR	2E-12		0.0273215	[0.02-0.035] unit decrease	Affymetrix [323858] (imputed)	N
597	chr6_mann_hap4	1605022	1605023	rs1264622	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	HCG17, HLA-L, HCG18	rs1264622-T	NR	2E-11		0.0260716	[0.018-0.034] unit decrease	Affymetrix [127266] (imputed)	N
597	chr6_mann_hap4	1605022	1605023	rs1264622	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6p22.1	HCG18	rs1264622-T	0.200945	1E-26		0.045548007	[0.037-0.054] unit decrease	Affymetrix [93095623] (imputed)	N
597	chr6_mann_hap4	1605022	1605023	rs1264622	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p22.1	HLA-L, HCG17, HCG18	rs1264622-T	0.1901	2E-7		0.0455	[0.028-0.063] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
597	chr6_mann_hap4	1605022	1605023	rs1264622	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	6p22.1	HCG18	rs1264622-T	0.2019	4E-13		0.03202955	[0.023-0.041] unit decrease	Affymetrix [~ 2500000] (imputed)	N
597	chr6_mann_hap4	1621840	1621840	rs11380688	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p22.1	HCG17, HCG18	rs11380688-CT	0.2755	1E-9		0.0469	[0.032-0.062] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
597	chr6_mann_hap4	1624457	1624458	rs139419536	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	6p22.1	HCG18	rs139419536-G	0.5266	1E-22		0.0193	[0.015-0.023] unit decrease	Affymetrix [18391927] (imputed)	N
597	chr6_mann_hap4	1624750	1624751	rs577217250	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	6p22.1	HCG18, HCG17	rs577217250-C	0.6248	8E-56		0.06073397	[0.053-0.068] unit decrease	Affymetrix [~ 2500000] (imputed)	N
597	chr6_mann_hap4	1624750	1624751	rs577217250	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	6p22.1	HCG18, HCG17	rs577217250-C	0.6248	5E-58		0.0619973	[0.054-0.07] unit decrease	Affymetrix [~ 2500000] (imputed)	N
597	chr6_mann_hap4	1627140	1627141	rs1264587	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p22.1	HCG17, HCG18	rs1264587-G	NR	7E-10		0.0215064	[0.015-0.028] unit decrease	Affymetrix [319769] (imputed)	N
597	chr6_mann_hap4	1627140	1627141	rs1264587	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p22.1	HCG17, HCG18	rs1264587-G	NR	5E-9		0.0203583	[0.014-0.027] unit decrease	Affymetrix [319769] (imputed)	N
597	chr6_mann_hap4	1627140	1627141	rs1264587	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p22.1	HCG17, HCG18	rs1264587-G	NR	4E-8		0.0194219	[0.013-0.026] unit decrease	Affymetrix [321169] (imputed)	N
597	chr6_mann_hap4	1629153	1629154	rs6926097	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mumps	31,227 European ancestry cases, 54,153 European ancestry controls	NA	6p22.1	NR	rs6926097-?	NR	2E-13		0.5671	[0.41-0.72] unit decrease	Illumina [at least 560000] (imputed)	N
597	chr6_mann_hap4	1633187	1633188	rs9357097	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8 on CD39+ CD8+ T cell	2,915 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p22.1		rs9357097-T	0.47616	8E-12		0.1925	[0.14-0.25] unit increase	Illumina [17951463] (imputed)	N
597	chr6_mann_hap4	1633716	1633717	rs1264585	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p22.1	NR	rs1264585-A	0.233	1E-13	(conditional)	1.206	[1.16-1.25]	Illumina [11270530] (imputed)	N
597	chr6_mann_hap4	1636351	1636352	rs9261655	33563987	Tyrrell J	2021-02-09	Nat Commun	Genetic predictors of participation in optional components of UK Biobank.	Percentage of invited food questionnaires completed	300,639 European ancestry individuals	NA	6p22.1	NR	rs9261655-G	0.89	4E-9		0.86	[0.57-1.15] unit increase	Affymetrix [39302896] (imputed)	N
597	chr6_mann_hap4	1638738	1638739	rs1264584	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	334,944 European ancestry, NR ancestry individuals	NA	6p22.1		rs1264584-?	NR	5E-8				Affymetrix [NR] (imputed)	N
597	chr6_mann_hap4	1644138	1644139	rs1110464	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	6p22.1	TRIM39-RPP21	rs1110464-T	0.5706	3E-9		0.015407745	[0.01-0.021] unit decrease	Affymetrix [~ 11515000] (imputed)	N
597	chr6_mann_hap4	1647315	1647316	rs3094067	25827949	Kunz M	2015-05-04	Exp Dermatol	Genome-wide association study identifies new susceptibility loci for cutaneous lupus erythematosus.	Cutaneous lupus erythematosus	151 European ancestry cases, 1,288 European ancestry controls	219 European ancestry cases, 262 European ancestry controls	6p22.1	TRIM39, RPP21	rs3094067-G	0.096	2E-11		2.32	[1.68-3.20]	Affymetrix [906600]	N
597	chr6_mann_hap4	1650673	1650674	rs3778624	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	6p22.1	NR	rs3778624-?		7E-7	(MICA)			Illumina [NR]	N
597	chr6_mann_hap4	1654026	1654027	rs9261659	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p22.1	NR	rs9261659-G	0.12	1E-10	(IFNAR2_of_CD20p)			Illumina [5084123] (imputed)	N
597	chr6_mann_hap4	1654026	1654027	rs9261659	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p22.1	NR	rs9261659-?	NR	3E-13		0.1554	[0.11-0.2] unit decrease	Illumina [at least 560000] (imputed)	N
597	chr6_mann_hap4	1661105	1661106	rs45626136	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p22.1	RPP21	rs45626136-C	0.939	1E-6		0.111	[0.066-0.156] unit increase	Affymetrix, Illumina [7374092] (imputed)	N
597	chr6_mann_hap4	1661416	1661417	rs6986	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Anxiety	at least 23,606 European ancestry cases, at least 113,351 European ancestry controls	624,615 European ancestry cases, 1,310,854 European ancestry controls	6p22.1	TRIM39, RPP21	rs6986-G	0.2545	1E-12		0.018671134	[0.013-0.025] unit decrease	NR [9417325] (imputed)	N
597	chr6_mann_hap4	1661416	1661417	rs6986	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	6p22.1	RPP21	rs6986-C	0.223335	7E-10		6.16	z score increase	NR [10847151] (imputed)	N
597	chr6_mann_hap4	1661416	1661417	rs6986	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling guilty	373,380 European ancestry individuals	NA	6p22.1	TRIM39-RPP21	rs6986-C	0.223335	4E-13		7.25	z score increase	NR [10847151] (imputed)	N
597	chr6_mann_hap4	1661416	1661417	rs6986	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	6p22.1	GNL1, HLA-E, PRR3, RPP21, TRIM10, TRIM15, TRIM26, TRIM31, TRIM39, TRIM39-RPP21, TRIM40	rs6986-C	0.22334	8E-9		5.76	z score increase	Illumina [18485882] (imputed)	N
597	chr6_mann_hap4	1661416	1661417	rs6986	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	6p22.1	NR	rs6986-C	0.2277	5E-6	(Trans-16:1n-7, EA)	0.0079	[0.0046-0.0112] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
597	chr6_mann_hap4	1669134	1669135	rs3132649	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	6p22.1	TRIM39-RPP21, HLA-E	rs3132649-G	NR	4E-7		0.152484	[0.093-0.211] unit increase	Illumina [at least 950000] (imputed)	N
597	chr6_mann_hap4	1672054	1672054	rs9280949	31577861	Dai J	2019-10-31	Int J Cancer	Genome-wide association study of INDELs identified four novel susceptibility loci associated with lung cancer risk.	Lung cancer	20,871 European ancestry cases, 15,971 European ancestry controls, 2,331 Chinese ancestry cases, 3,077 Chinese ancestry controls	NA	6p22.1	RPP21	rs9280949-T	0.09	3E-10		1.16	[1.11-1.22]	Illumina [484196]	N
597	chr6_mann_hap4	1673608	1673609	rs3130379	31272903	Sunadome H	2019-07-01	Allergol Int	Correlation between eosinophil count, its genetic background and body mass index: The Nagahama Study.	Eosinophil counts	4,650 East Asian ancestry individuals	NA	6p22.1	NR	rs3130379-T	0.11	2E-7		0.1677	NR unit increase	Illumina [103680] (imputed)	N
597	chr6_mann_hap4	1673608	1673609	rs3130379	31272903	Sunadome H	2019-07-01	Allergol Int	Correlation between eosinophil count, its genetic background and body mass index: The Nagahama Study.	Eosinophil counts	4,206 East Asian ancestry individuals	NA	6p22.1	NR	rs3130379-T	0.11	4E-10		0.2134	NR unit increase	Illumina [103680] (imputed)	N
597	chr6_mann_hap4	1674600	1674600	rs34500224	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	6p22.1	UBQLN1P1, HCG19P	rs34500224-CA	0.272902	2E-20		0.026657145	[0.021-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
597	chr6_mann_hap4	1674605	1674605	rs202005918	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	95,717 East Asian ancestry individuals	NA	6p22.1		rs202005918-CA	0.233019	1E-8		0.0295853	[0.019-0.04] unit increase	Illumina [13471431] (imputed)	N
597	chr6_mann_hap4	1676029	1676030	rs3094622	29899525	Klimentidis YC	2018-06-13	Int J Obes (Lond)	Genome-wide association study of habitual physical activity in over 377,000 UK Biobank participants identifies multiple variants including CADM2 and APOE.	Moderate to vigorous physical activity levels	377,234 European ancestry individuals	NA	6p22.1	RPP21	rs3094622-A	0.86	1E-9		0.02	unit increase	Affymetrix [11800000] (imputed)	N
597	chr6_mann_hap4	1677270	1677271	rs116470386	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p22.1	NR	rs116470386-?	NR	5E-7		0.2768	[0.17-0.39] unit decrease	Illumina [at least 560000] (imputed)	N
597	chr6_mann_hap4	1681580	1681581	rs3094054	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p22.1	NR	rs3094054-T	0.1132	1E-7	(EA)	0.056	[0.035-0.077] unit decrease	Illumina [~ 11800000] (imputed)	N
597	chr6_mann_hap4	1683424	1683425	rs2057726	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	6p22.1		rs2057726-C	0.143	2E-91		0.31	[0.28-0.34] % increase	Affymetrix [NR] (imputed)	N
597	chr6_mann_hap4	1688014	1688014	rs139568388	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	UBQLN1P1	rs139568388-CT	NR	2E-8		0.0220953	[0.014-0.03] unit decrease	Affymetrix [323858] (imputed)	N
597	chr6_mann_hap4	1688014	1688014	rs139568388	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	UBQLN1P1	rs139568388-CT	NR	3E-8		0.0218212	[0.014-0.03] unit decrease	Affymetrix [127266] (imputed)	N
597	chr6_mann_hap4	1690828	1690829	rs3129817	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p22.1	UBQLN1P1	rs3129817-A	NR	1E-9		0.0241213	[0.016-0.032] unit decrease	Affymetrix [319769] (imputed)	N
597	chr6_mann_hap4	1690828	1690829	rs3129817	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p22.1	UBQLN1P1	rs3129817-A	NR	1E-8		0.0225242	[0.015-0.03] unit decrease	Affymetrix [319769] (imputed)	N
597	chr6_mann_hap4	1690828	1690829	rs3129817	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p22.1	UBQLN1P1	rs3129817-A	NR	5E-8		0.0218736	[0.014-0.03] unit decrease	Affymetrix [321169] (imputed)	N
597	chr6_mann_hap4	1690828	1690829	rs3129817	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Anxiety	at least 23,606 European ancestry cases, at least 113,351 European ancestry controls	624,615 European ancestry cases, 1,310,854 European ancestry controls	6p22.1	UBQLN1P1	rs3129817-G	0.1083	2E-48		0.052231386	[0.044-0.06] unit increase	NR [9417325] (imputed)	N
597	chr6_mann_hap4	1690828	1690829	rs3129817	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	UBQLN1P1	rs3129817-A	NR	1E-8		5.695	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
597	chr6_mann_hap4	1695385	1695386	rs970270	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Prostate cancer	10,792 European ancestry cases, 410,350 European ancestry controls	NA	6p22.1		rs970270-A	NR	3E-7		1.0985389	NR	Affymetrix [7846216] (imputed)	N
597	chr6_mann_hap4	1695799	1695800	rs3132625	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Peripheral artery disease	7,114 European ancestry cases, 475,964 European ancestry controls, 4,112 East Asian ancestry cases, 173,601 East Asian ancestry controls	NA	6p22.1		rs3132625-G	NR	2E-8		0.165	[0.11-0.22] unit increase	Affymetrix, Illumina [25844651] (imputed)	N
598	chr6_mann_hap4	1707776	1707777	rs2524204	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	6p22.1	intergenic	rs2524204-C	0.1322	6E-15		0.04113655	[0.031-0.051] unit decrease	Affymetrix [~ 2500000] (imputed)	N
598	chr6_mann_hap4	1707776	1707777	rs2524204	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	6p22.1	intergenic	rs2524204-C	0.1322	7E-14		0.03948169	[0.029-0.05] unit decrease	Affymetrix [~ 2500000] (imputed)	N
598	chr6_mann_hap4	1709437	1709438	rs9391683	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p22.1		rs9391683-G	0.689	2E-33				Affymetrix [10369434] (imputed)	N
598	chr6_mann_hap4	1709502	1709503	rs2516686	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	6p22.1	intergenic	rs2516686-G	0.1322	1E-13		0.03934043	[0.029-0.05] unit decrease	Affymetrix [~ 2500000] (imputed)	N
598	chr6_mann_hap4	1709502	1709503	rs2516686	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	6p22.1	intergenic	rs2516686-G	0.1322	6E-12		0.03638258	[0.026-0.047] unit decrease	Affymetrix [~ 2500000] (imputed)	N
598	chr6_mann_hap4	1709886	1709887	rs9391684	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p22.1		rs9391684-G	0.688	7E-19				Affymetrix [10369434] (imputed)	N
598	chr6_mann_hap4	1713527	1713528	rs3130116	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p22.1	NR	rs3130116-C	0.1391	6E-13		0.0124	[0.0091-0.0157] unit decrease	NR [7666894] (imputed)	N
598	chr6_mann_hap4	1715090	1715091	rs1264565	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	6p22.1		rs1264565-T	0.618	8E-15		0.01	[0.008-0.012] unit increase	NR [NR] (imputed)	N
598	chr6_mann_hap4	1721964	1721965	rs28780100	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p22.1	NR	rs28780100-?	NR	3E-9		0.1143	[0.077-0.152] unit increase	Illumina [at least 560000] (imputed)	N
598	chr6_mann_hap4	1723963	1723964	rs34874107	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	6p22.1		rs34874107-C	0.182865	4E-10		0.019685585	[0.014-0.026] unit increase	Affymetrix [93095623] (imputed)	N
598	chr6_mann_hap4	1728445	1728446	rs78860372	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lung cancer	4,444 East Asian ancestry cases, 174,282 East Asian ancestry controls	NA	6p22.1		rs78860372-T	0.236112602	5E-9		0.14972878	[0.099-0.2] unit increase	Illumina [13429980] (imputed)	N
598	chr6_mann_hap4	1730247	1730248	rs1264544	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	334,944 European ancestry, NR ancestry individuals	NA	6p22.1		rs1264544-?	NR	5E-8				Affymetrix [NR] (imputed)	N
598	chr6_mann_hap4	1730247	1730248	rs1264544	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	6p22.1		rs1264544-C	0.667	1E-12				Affymetrix [10369434] (imputed)	N
598	chr6_mann_hap4	1733825	1733826	rs3094717	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p22.1	NR	rs3094717-?	NR	6E-7		0.0733	[0.044-0.102] unit decrease	Illumina [at least 560000] (imputed)	N
598	chr6_mann_hap4	1735321	1735322	rs139215104	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mumps	31,227 European ancestry cases, 54,153 European ancestry controls	NA	6p22.1	NR	rs139215104-?	NR	6E-11		0.5908	[0.41-0.77] unit increase	Illumina [at least 560000] (imputed)	N
598	chr6_mann_hap4	1738259	1738260	rs9261899	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	6p22.1	NR	rs9261899-?	NR	9E-33		11.926	NR z score increase	Illumina [at least 830937] (imputed)	N
598	chr6_mann_hap4	1739670	1739671	rs76241157	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lung cancer	3,791 European ancestry cases, 489,012 European ancestry controls, 4,444 East Asian ancestry cases, 174,282 East Asian ancestry controls	NA	6p22.1		rs76241157-T	NR	1E-8		0.1454	[0.095-0.196] unit increase	Affymetrix, Illumina [25845450] (imputed)	N
598	chr6_mann_hap4	1740054	1740055	rs3130127	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	MICC	rs3130127-A	NR	8E-10		6.154	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
598	chr6_mann_hap4	1746469	1746470	rs114810763	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6p22.1		rs114810763-A	0.1549	2E-9		0.0121	[0.0082-0.016] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
598	chr6_mann_hap4	1746469	1746470	rs114810763	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6p22.1	Intergenic	rs114810763-A	0.1549	6E-12	(MTAG)	0.0129	[0.0092-0.0166] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
598	chr6_mann_hap4	1748842	1748843	rs149543464	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms (MTAG)	354,862 European ancestry individuals	NA	6p22.1	NR	rs149543464-G	0.8838	1E-10		0.0217	[0.015-0.028] unit increase	Illumina [NR] (imputed)	N
598	chr6_mann_hap4	1748842	1748843	rs149543464	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms	354,862 European ancestry individuals	NA	6p22.1	NR	rs149543464-G	0.8838	8E-9		0.0213	[0.014-0.029] unit increase	Illumina [NR] (imputed)	N
598	chr6_mann_hap4	1756866	1756867	rs1269556	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	6p22.1	NR	rs1269556-?	NR	2E-6		0.0083093	[0.0049-0.0117] unit decrease	Affymetrix [805426] (imputed)	N
598	chr6_mann_hap4	1757328	1757329	rs3132645	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p22.1	RNF39, TRIM31, FLOT1, PPP1R18, HLA-J, ZNRD1-AS1_3, ZNRD1, TRIM26, HCG17, TRIM26BP, HLA-L, TRIM39-RPP21, RPP21, HCG19P, ATAT1, NRM, IER3, HCG20, LINC00243, ZNRD1-AS1, HCG4P3, PPP1R11, TRIM31-AS1, TRIM40, TRIM10, TRIM15, PAIP1P1, XXbac-BPG283O16.9, HCG18, TRIM39, HLA-N, UBQLN1P1, MICC, SUCLA2P1, GNL1, ABCF1, PPP1R10, PTMAP1, MRPS18B, C6orf136, AL662800.2, DHX16, AL662797.1, XXbac-BPG252P9.9, TUBB, MDC1, Y_RNA, XXbac-BPG252P9.10, RN7SL353P	rs3132645-C	0.09428285	4E-22	(EA, MHC class I polypeptide-related sequence B)	0.7147	[0.57-0.86] unit decrease	Affymetrix [509946]	N
598	chr6_mann_hap4	1759982	1759983	rs1264516	33106546	Johnson TA	2020-10-26	J Hum Genet	Association of an IGHV3-66 gene variant with Kawasaki disease.	Kawasaki disease	1,276 East Asian ancestry cases, 5,086 East Asian ancestry controls	2,152 East Asian ancestry cases, 2,751 East Asian ancestry controls	6p22.1	LOC105375012	rs1264516-A	NR	4E-11		1.24	[1.16-1.32]	Affymetrix, Illumina [6265045] (imputed)	N
598	chr6_mann_hap4	1780254	1780255	rs3130141	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p22.1	RPP21, HLA-E	rs3130141-A	0.283	4E-23				Illumina [118177]	N
598	chr6_mann_hap4	1789281	1789282	rs2516667	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p22.1	NR	rs2516667-?	NR	5E-10		0.0889	[0.061-0.117] unit decrease	Illumina [at least 560000] (imputed)	N
598	chr6_mann_hap4	1789380	1789381	rs3132615	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p22.1	NR	rs3132615-T	0.1154	2E-6	(EA)	0.0507	[0.03-0.071] unit decrease	Illumina [~ 11800000] (imputed)	N
598	chr6_mann_hap4	1801040	1801041	rs9380180	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p22.1	RANP1	rs9380180-A	NR	6E-9		0.0171541	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
598	chr6_mann_hap4	1801040	1801041	rs9380180	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p22.1	RANP1	rs9380180-A	NR	1E-8		0.0168134	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
598	chr6_mann_hap4	1803371	1803372	rs12207974	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (age of onset)	37,846 British ancestry individuals	NA	6p22.1	NR	rs12207974-C	0.776	9E-11		1.066	[0.74-1.39] unit decrease	Affymetrix [10894596] (imputed)	N
598	chr6_mann_hap4	1803398	1803399	rs17875360	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	6p22.1	NR	rs17875360-?	NR	1E-6		0.0925	[0.055-0.13] unit increase	Illumina [at least 560000] (imputed)	N
598	chr6_mann_hap4	1803997	1803998	rs1264459	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	6p22.1	HLA-E	rs1264459-A	0.826302	3E-10		0.019164842	[0.013-0.025] unit increase	Affymetrix [93095623] (imputed)	N
598	chr6_mann_hap4	1806141	1806142	rs1264457	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	6p22.1	HLA-E	rs1264457-A	0.60324	8E-24		0.02398372	[0.019-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
598	chr6_mann_hap4	1806141	1806142	rs1264457	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p22.1	HLA-E	rs1264457-G		4E-11		0.015	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
598	chr6_mann_hap4	1816866	1816867	rs3131115	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder	29,475 European ancestry cases, 63,482 European ancestry controls	NA	6p21.33	NR	rs3131115-C	0.671942	1E-7		1.0845987	[1.05-1.12]	Affymetrix [7791636] (imputed)	N
598	chr6_mann_hap4	1816866	1816867	rs3131115	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	6p21.33	HLA-E, GNL1	rs3131115-T	NR	2E-6		0.0966506	[0.057-0.136] unit decrease	Illumina [at least 950000] (imputed)	N
598	chr6_mann_hap4	1819595	1819596	rs2429657	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.33		rs2429657-G	0.21809299999999998	2E-8		1.0286343	[1.02-1.04]	Affymetrix, Illumina [9851866] (imputed)	N
598	chr6_mann_hap4	1827985	1827986	rs140668832	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs140668832-?		2E-9		1.07	[1.05-1.09]	Illumina [7645193] (imputed)	N
598	chr6_mann_hap4	1827985	1827986	rs140668832	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs140668832-?		3E-10		1.92	[1.57-2.35]	Illumina [7645193] (imputed)	N
598	chr6_mann_hap4	1830547	1830548	rs28894081	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p21.33	NR	rs28894081-A	0.0655	1E-7		0.0126	[0.0079-0.0173] unit increase	NR [7666894] (imputed)	N
598	chr6_mann_hap4	1831560	1831561	rs181383036	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p21.33	NR	rs181383036-?	NR	2E-12		0.3665	[0.27-0.47] unit increase	Illumina [at least 560000] (imputed)	N
598	chr6_mann_hap4	1832099	1832100	rs10484552	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p21.33	NR	rs10484552-?	NR	8E-10		0.0986	[0.067-0.13] unit decrease	Illumina [at least 560000] (imputed)	N
599	chr6_mann_hap4	1835367	1835368	rs143654430	30111768	Yao C	2018-08-15	Nat Commun	Genome-wide mapping of plasma protein QTLs identifies putatively causal genes and pathways for cardiovascular disease.	Blood protein levels	6861 European ancestry individuals	4298 European ancestry individuals	6p21.33		rs143654430-T	0.981	7E-18	(C2)	0.639	unit increase	Affymetrix, Illumina [8509364] (imputed)	N
599	chr6_mann_hap4	1841098	1841099	rs139629463	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mumps	31,227 European ancestry cases, 54,153 European ancestry controls	NA	6p21.33	NR	rs139629463-?	NR	4E-6		0.3	[0.17-0.43] unit increase	Illumina [at least 560000] (imputed)	N
599	chr6_mann_hap4	1842529	1842530	rs149608588	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p21.33	NR	rs149608588-?	NR	1E-6		0.2523	[0.15-0.36] unit decrease	Illumina [at least 560000] (imputed)	N
599	chr6_mann_hap4	1843745	1843746	rs41265607	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.33		rs41265607-C	0.801	3E-28				Affymetrix [10369434] (imputed)	N
599	chr6_mann_hap4	1843745	1843746	rs41265607	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs41265607-C	0.801	4E-34				Affymetrix [10369434] (imputed)	N
599	chr6_mann_hap4	1843803	1843804	rs147537141	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	6p21.33		rs147537141-G	0.014219	2E-16		0.08431184	[0.064-0.104] unit increase	Affymetrix [93095623] (imputed)	N
599	chr6_mann_hap4	1857027	1857028	rs3130117	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p21.33	NR	rs3130117-?	NR	2E-7		0.0742	[0.046-0.102] unit increase	Illumina [at least 560000] (imputed)	N
599	chr6_mann_hap4	1859241	1859242	rs2524222	27479909	Hyde CL	2016-08-01	Nat Genet	Identification of 15 genetic loci associated with risk of major depression in individuals of European descent.	Major depressive disorder	84,847 European ancestry cases, 241,266 European ancestry controls	45,773 European ancestry cases, 106,354 European ancestry controls	6p21.33	GNL1	rs2524222-T	0.219809	1E-6		0.0335	[0.02-0.047] unit increase	Illumina [1220000] (imputed)	N
599	chr6_mann_hap4	1876725	1876726	rs3130040	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	6p21.33	PRR3	rs3130040-T	NR	2E-8		0.0366187	[0.024-0.049] unit increase	Illumina [13520550] (imputed)	N
599	chr6_mann_hap4	1885677	1885678	rs3132613	21900946	Nakabayashi K	2011-09-08	J Hum Genet	Identification of independent risk loci for Graves' disease within the MHC in the Japanese population.	Graves' disease	1,119 Japanese ancestry cases, 2,718 Japanese ancestry controls	432 Japanese ancestry cases, 1,157 Japanese ancestry controls	6p21.33	MHC	rs3132613-C	0.25	1E-13		1.43	[1.30-1.57]	Perlegen [268068]	N
599	chr6_mann_hap4	1887276	1887277	rs4148247	26379185	Garcia-Etxebarria K	2015-09-17	PLoS One	No Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity.	Mild influenza (H1N1) infection	107 European ancestry mild cases, 549 European ancestry population controls	NA	6p21.33	GCN20, ABCF1	rs4148247-?	0.0167	1E-8		5.963	[5.27-6.66]	Affymetrix [547296]	N
599	chr6_mann_hap4	1888023	1888024	rs2269710	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	IgM levels	14,442 Icelandic ancestry individuals	2,157 Swedish ancestry individuals	6p21.33	ABCF1	rs2269710-C	0.3579	3E-20		0.11	NR SD units increase	Illumina [21568490] (imputed)	N
599	chr6_mann_hap4	1892472	1892473	rs3132610	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p21.33	NR	rs3132610-G	0.1198	1E-6	(EA)	0.0499	[0.03-0.07] unit decrease	Illumina [~ 11800000] (imputed)	N
599	chr6_mann_hap4	1913925	1913926	rs9262120	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p21.33	ABCF1	rs9262120-A	NR	3E-8		5.562	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
599	chr6_mann_hap4	1914479	1914480	rs3095276	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	6p21.33	NR	rs3095276-?	NR	5E-6		0.0784	[0.045-0.112] unit increase	Illumina [at least 560000] (imputed)	N
599	chr6_mann_hap4	1919542	1919543	rs1264423	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.33		rs1264423-T	0.489	1E-18				Affymetrix [10369434] (imputed)	N
599	chr6_mann_hap4	1919542	1919543	rs1264423	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	6p21.33	PPP1R10	rs1264423-C	0.5121	6E-16		0.02836222	[0.021-0.035] unit decrease	Affymetrix [~ 2500000] (imputed)	N
599	chr6_mann_hap4	1921913	1921914	rs9262122	30169916	Sun Y	2018-08-31	J Eur Acad Dermatol Venereol	Investigation of the Predisposing Factor of Pemphigus and its clinical subtype through a Genome-wide association and next generation sequence analysis.	Pemphigus vulgaris	101 Chinese ancestry cases, 844 Chinese ancestry controls	at least 56 Chinese ancestry cases, up to 996 Chinese ancestry controls	6p21.33	NR	rs9262122-?	NR	5E-6	(adjusted for HLA-DRB1*14)	2.73		Illumina [5546030] (imputed)	N
599	chr6_mann_hap4	1924852	1924853	rs1264419	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	6p21.33	NR	rs1264419-C	0.5128	9E-10		1.037	[1.03-1.05]	Affymetrix, Illumina [NR] (imputed)	N
599	chr6_mann_hap4	1926406	1926407	rs2267637	33002439	Jin G	2020-10-01	Lancet Oncol	Genetic risk, incident gastric cancer, and healthy lifestyle: a meta-analysis of genome-wide association studies and prospective cohort study.	Gastric cancer	10,254 Han Chinese ancestry cases, 10,914 Han Chinese ancestry controls	NA	6p21.33	NR	rs2267637-T	0.31	3E-6		1.11	NR	Affymetrix, Illumina [6957974] (imputed)	N
599	chr6_mann_hap4	1932204	1932205	rs55777621	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6p21.33	NR	rs55777621-?	NR	4E-12				Affymetrix [~ 8270000] (imputed)	N
599	chr6_mann_hap4	1937457	1937458	rs111296996	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	6p21.33	MRPS18B	rs111296996-A	0.9872	5E-6		0.2039	[0.12-0.29] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
599	chr6_mann_hap4	1941599	1941600	rs148828689	32599975	Bae JS	2020-06-30	Cancer Res Treat	Genome-Wide Association Study for the Identification of Novel Genetic Variants Associated with the Risk of Neuroblastoma in Korean Children.	Neuroblastoma (pediatric)	296 Korean ancestry child cases, 1,000 Korean ancestry adult controls	NA	6p21.33	MRPS18B	rs148828689-?		4E-18		7.8	[4.7-12.9]	Illumina [NR] (imputed)	N
599	chr6_mann_hap4	1949303	1949304	rs12665339	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.33		rs12665339-A	0.85	3E-28				Affymetrix [10369434] (imputed)	N
599	chr6_mann_hap4	1949303	1949304	rs12665339	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	6p21.33	ATAT1	rs12665339-G	0.17	6E-9		1.06	[1.04-1.08]	Illumina [20370935] (imputed)	N
600	chr6_mann_hap4	1975282	1975283	rs1076829	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	DHX16	rs1076829-C	NR	4E-8		0.0176091	[0.011-0.024] unit decrease	Affymetrix [127266] (imputed)	N
600	chr6_mann_hap4	1976318	1976319	rs1076828	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	DHX16	rs1076828-A	NR	2E-8		0.0180204	[0.012-0.024] unit decrease	Affymetrix [323858] (imputed)	N
600	chr6_mann_hap4	1977023	1977024	rs74917683	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p21.33	NR	rs74917683-?	NR	2E-11		0.1491	[0.1-0.19] unit increase	Illumina [at least 560000] (imputed)	N
600	chr6_mann_hap4	1981658	1981659	rs55740398	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	6p21.33		rs55740398-A	0.0027098	6E-6		0.29793	[0.17-0.43] unit increase	Affymetrix [15580782] (imputed)	N
600	chr6_mann_hap4	1981941	1981942	rs3094097	31272903	Sunadome H	2019-07-01	Allergol Int	Correlation between eosinophil count, its genetic background and body mass index: The Nagahama Study.	Eosinophil counts	4,206 East Asian ancestry individuals	NA	6p21.33	NR	rs3094097-G	0.22	2E-9		0.1545	NR unit increase	Illumina [103680] (imputed)	N
600	chr6_mann_hap4	1998092	1998093	rs9262142	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p21.33	NR	rs9262142-A	0.1166	3E-6	(EA)	0.0489	[0.028-0.069] unit decrease	Illumina [~ 11800000] (imputed)	N
600	chr6_mann_hap4	1998384	1998385	rs2394392	31272903	Sunadome H	2019-07-01	Allergol Int	Correlation between eosinophil count, its genetic background and body mass index: The Nagahama Study.	Eosinophil counts	4,650 East Asian ancestry individuals	NA	6p21.33	NR	rs2394392-G	0.18	2E-8		0.1481	NR unit increase	Illumina [103680] (imputed)	N
600	chr6_mann_hap4	2000847	2000848	rs9262143	33909500	Moll M	2021-04-28	Am J Physiol Lung Cell Mol Physiol	A Systematic Analysis of Protein-altering Exonic Variants in Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease	up to 31,465 European ancestry cases, up to 203,688 European ancestry controls, up to 1,413 African ancestry cases, up to 6,080 African ancestry controls, up to 287 East Asian ancestry cases, up to 7,484 East Asian ancestry controls, up to 61 Hispanic cases, up to 613 Hispanic controls	NA	6p21.33	PPP1R18	rs9262143-T	0.14	1E-13		1.11	[1.08 -1.15]	Illumina [at least 109036]	N
600	chr6_mann_hap4	2000847	2000848	rs9262143	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p21.33	PPP1R18	rs9262143-T		3E-28		0.036	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
600	chr6_mann_hap4	2000848	2000849	rs138394556	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	6p21.33	NRM	rs138394556-A	0.1475	2E-8		0.018794373	[0.012-0.025] unit decrease	Affymetrix [11515109] (imputed)	N
600	chr6_mann_hap4	2004913	2004914	rs2269705	27151647	Chen G	2016-05-05	Addict Biol	An association study revealed substantial effects of dominance, epistasis and substance dependence co-morbidity on alcohol dependence symptom count.	Alcohol dependence symptom count	2,605 European ancestry individuals, 1,233 African American individuals	NA	6p21.33	NRM	rs2269705-?		3E-10	(additive)	0.266	[0.18-0.35] unit decrease	Illumina [974863]	N
600	chr6_mann_hap4	2005081	2005082	rs3094092	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	6p21.33	NRM	rs3094092-T	NR	2E-8		0.036598	[0.024-0.049] unit increase	Illumina [13520550] (imputed)	N
600	chr6_mann_hap4	2011160	2011161	rs137934746	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p21.33	NR	rs137934746-?	NR	1E-6		0.2471	[0.15-0.35] unit decrease	Illumina [at least 560000] (imputed)	N
600	chr6_mann_hap4	2012545	2012546	rs370462350	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	6p21.33	NRM	rs370462350-?	NR	2E-9		0.375	[0.25-0.5] unit decrease	Illumina [34656550] (imputed)	N
600	chr6_mann_hap4	2013619	2013620	rs149856401	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Stable angina pectoris	17,894 European ancestry cases, 325,132 European ancestry controls, 18,833 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	6p21.33		rs149856401-G	NR	1E-13		0.1724	[0.13-0.22] unit increase	Affymetrix, Illumina [20456336] (imputed)	N
600	chr6_mann_hap4	2014540	2014542	rs147637345	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p21.33	NR	rs147637345-?	NR	1E-7		0.0819	[0.052-0.112] unit increase	Illumina [at least 560000] (imputed)	N
600	chr6_mann_hap4	2014540	2014542	rs147637345	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	6p21.33	NR	rs147637345-?	NR	4E-6		0.0842	[0.048-0.12] unit decrease	Illumina [at least 560000] (imputed)	N
600	chr6_mann_hap4	2014763	2014764	rs9468811	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs9468811-C	0.937946818961625	6E-7	(IGP19)	0.3471	[0.21-0.48] unit decrease	Illumina [~ 2500000] (imputed)	N
600	chr6_mann_hap4	2014763	2014764	rs9468811	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs9468811-C	0.937725588025022	3E-6	(IGP74)	0.3262	[0.19-0.46] unit decrease	Illumina [~ 2500000] (imputed)	N
600	chr6_mann_hap4	2014763	2014764	rs9468811	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs9468811-C	0.937641317877842	2E-6	(IGP75)	0.3304	[0.19-0.47] unit decrease	Illumina [~ 2500000] (imputed)	N
600	chr6_mann_hap4	2014763	2014764	rs9468811	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs9468811-C	0.937418950958538	3E-6	(IGP69)	0.3228	[0.19-0.46] unit decrease	Illumina [~ 2500000] (imputed)	N
600	chr6_mann_hap4	2014763	2014764	rs9468811	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs9468811-C	0.937308425901202	5E-7	(IGP76)	0.3469	[0.21-0.48] unit increase	Illumina [~ 2500000] (imputed)	N
600	chr6_mann_hap4	2017362	2017363	rs115448006	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.33	NR	rs115448006-T	0.01	5E-11		0.599756	[0.42-0.78] unit increase	Affymetrix [up to 8900000] (imputed)	N
600	chr6_mann_hap4	2027721	2027722	rs3094093	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs3094093-T	0.107712365538735	8E-6	(IGP65)	0.2214	[0.12-0.32] unit decrease	Illumina [~ 2500000] (imputed)	N
600	chr6_mann_hap4	2027721	2027722	rs3094093	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs3094093-T	0.107418420152946	8E-6	(IGP2)	0.2231	[0.13-0.32] unit increase	Illumina [~ 2500000] (imputed)	N
600	chr6_mann_hap4	2027721	2027722	rs3094093	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs3094093-T	0.107325880449438	3E-6	(IGP42)	0.2336	[0.14-0.33] unit increase	Illumina [~ 2500000] (imputed)	N
600	chr6_mann_hap4	2033513	2033514	rs4713354	31272903	Sunadome H	2019-07-01	Allergol Int	Correlation between eosinophil count, its genetic background and body mass index: The Nagahama Study.	Eosinophil counts	4,650 East Asian ancestry individuals	NA	6p21.33	MDC1	rs4713354-C	0.216	2E-8		0.14	NR unit increase	Illumina [103680] (imputed)	N
600	chr6_mann_hap4	2035565	2035566	rs117670375	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Gynecologic disease (multivariate analysis)	up to 7,975 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs117670375-?		1E-8	(uterine cervical cancer)			Illumina [7645193] (imputed)	N
600	chr6_mann_hap4	2035565	2035566	rs117670375	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Gynecologic disease	7,975 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs117670375-?		1E-7		1.16	[1.10-1.22]	Illumina [7645193] (imputed)	N
600	chr6_mann_hap4	2035565	2035566	rs117670375	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Gynecologic disease	7,315 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs117670375-?		2E-10				Illumina [7645193] (imputed)	N
600	chr6_mann_hap4	2035565	2035566	rs117670375	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs117670375-?		2E-9		1.07	[1.05-1.09]	Illumina [7645193] (imputed)	N
600	chr6_mann_hap4	2035565	2035566	rs117670375	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs117670375-?		3E-10		1.92	[1.57-2.35]	Illumina [7645193] (imputed)	N
600	chr6_mann_hap4	2036520	2036521	rs3132584	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	TUBB	rs3132584-T	NR	1E-8		0.021321	[0.014-0.029] unit decrease	Affymetrix [323858] (imputed)	N
600	chr6_mann_hap4	2036520	2036521	rs3132584	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	TUBB	rs3132584-T	NR	3E-8		0.0206734	[0.013-0.028] unit decrease	Affymetrix [127266] (imputed)	N
600	chr6_mann_hap4	2036520	2036521	rs3132584	32989287	Cuellar-Partida G	2020-09-28	Nat Hum Behav	Genome-wide association study identifies 48 common genetic variants associated with handedness.	Left-handedness	1,766,671 European ancestry individuals	NA	6p21.33	TUBB	rs3132584-T	0.2056	6E-25		0.95483845	[NR]	Illumina [12493444] (imputed)	N
600	chr6_mann_hap4	2041214	2041215	rs7781	33723403	Sha Z	2021-03-15	Nat Hum Behav	The genetic architecture of structural left-right asymmetry of the human brain.	Left-right brain asymmetry	32,256 European ancestry individuals	NA	6p21.33	TUBB	rs7781-G	0.24	2E-10				NR [9312144] (imputed)	N
600	chr6_mann_hap4	2042467	2042468	rs3094128	31504236	Wiberg A	2019-09-05	Brain	Handedness, language areas and neuropsychiatric diseases: insights from brain imaging and genetics.	Handedness (non-right-handed vs right-handed)	44,631 European ancestry non-right-handed individuals, 356,567 European ancestry right-handed individuals	NA	6p21.33	TUBB, MICB, FLOT1	rs3094128-?	0.789	3E-8		1.0526316	[1.03-1.06]	NR [~ 11000000] (imputed)	N
600	chr6_mann_hap4	2045540	2045541	rs3094127	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p21.33	FLOT1	rs3094127-A	NR	2E-8		5.644	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
600	chr6_mann_hap4	2046634	2046635	rs1064627	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	FLOT1	rs1064627-G	NR	2E-8		0.0196765	[0.013-0.027] unit increase	Affymetrix [321016] (imputed)	N
600	chr6_mann_hap4	2046634	2046635	rs1064627	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p21.33	NR	rs1064627-G	0.2	3E-13		1.15	[1.11-1.2]	Affymetrix [9886854] (imputed)	N
600	chr6_mann_hap4	2046634	2046635	rs1064627	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p21.33	NR	rs1064627-G	0.2	1E-18			[NR]	Affymetrix [9886854] (imputed)	N
600	chr6_mann_hap4	2046634	2046635	rs1064627	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p21.33	NR	rs1064627-G	0.2	2E-16		1.13	[1.1-1.16]	Affymetrix [9886854] (imputed)	N
600	chr6_mann_hap4	2046634	2046635	rs1064627	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p21.33	NR	rs1064627-G	0.2	2E-17			[NR]	Affymetrix [9886854] (imputed)	N
600	chr6_mann_hap4	2046634	2046635	rs1064627	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in non-current smokers	16,488 European ancestry cases, 169,688 European ancestry controls	NA	6p21.33	NR	rs1064627-G	0.2	2E-16		1.13	[1.1-1.16]	Affymetrix [9886854] (imputed)	N
600	chr6_mann_hap4	2046634	2046635	rs1064627	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in never smokers	8,631 European ancestry cases, 120,544 European ancestry controls	NA	6p21.33	NR	rs1064627-G	0.2	1E-13		1.16	[1.11-1.2]	Affymetrix [9886854] (imputed)	N
600	chr6_mann_hap4	2046634	2046635	rs1064627	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in ever smokers	12,446 European ancestry cases, 59,145 European ancestry controls	NA	6p21.33	NR	rs1064627-G	0.2	1E-7		1.1	[1.06-1.14]	Affymetrix [9886854] (imputed)	N
600	chr6_mann_hap4	2061673	2061674	rs2284174	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	6p21.33	IER3	rs2284174-C	0.22	2E-21		1.12	[1.10-1.15]	Affymetrix, Illumina [6224355] (imputed)	N
600	chr6_mann_hap4	2061673	2061674	rs2284174	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p21.33	NR	rs2284174-C	0.2189	1E-12		0.0102	[0.0075-0.0129] unit decrease	NR [7666894] (imputed)	N
600	chr6_mann_hap4	2061901	2061902	rs3130662	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p21.33	IER3, DDR1	rs3130662-A	0.334	1E-25				Illumina [118177]	N
600	chr6_mann_hap4	2065341	2065342	rs3129972	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of saturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	6p21.33		rs3129972-C	0.858209	1E-8		0.0336102	[0.022-0.045] unit decrease	NR [11722792] (imputed)	N
600	chr6_mann_hap4	2066118	2066119	rs2535324	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	RN7SL353P	rs2535324-C	NR	2E-9		0.0198337	[0.013-0.026] unit decrease	Affymetrix [127266] (imputed)	N
600	chr6_mann_hap4	2068394	2068395	rs28780111	30552173	Aterido A	2018-12-14	Ann Rheum Dis	Genetic variation at the glycosaminoglycan metabolism pathway contributes to the risk of psoriatic arthritis but not psoriasis.	Psoriatic arthritis	744 Spanish ancestry cases, 1,454 Spanish ancestry controls	1,430 cases, 1,417 controls	6p21.33	NR	rs28780111-?	NR	7E-11		6.51	[NR] z-score increase	Illumina [1387382] (imputed)	N
600	chr6_mann_hap4	2072125	2072126	rs12213680	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	6p21.33	RN7SL353P	rs12213680-A	0.171261	4E-17		0.0263628	[0.02-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
600	chr6_mann_hap4	2075022	2075023	rs3095340	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p21.33	HCG20	rs3095340-A	NR	4E-8		5.51	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
600	chr6_mann_hap4	2075868	2075869	rs3131035	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCG20	rs3131035-G	NR	4E-11		0.024688	[0.017-0.032] unit decrease	Affymetrix [323858] (imputed)	N
600	chr6_mann_hap4	2075868	2075869	rs3131035	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HCG20	rs3131035-G	NR	4E-10		0.0233656	[0.016-0.031] unit decrease	Affymetrix [127266] (imputed)	N
600	chr6_mann_hap4	2078423	2078424	rs9262172	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.33		rs9262172-T	0.742	1E-26				Affymetrix [10369434] (imputed)	N
600	chr6_mann_hap4	2079044	2079045	rs3094121	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCG20	rs3094121-T	NR	3E-8		0.0199067	[0.013-0.027] unit increase	Affymetrix [323123] (imputed)	N
600	chr6_mann_hap4	2084235	2084236	rs12526186	19721433	McClay JL	2009-09-01	Mol Psychiatry	Genome-wide pharmacogenomic analysis of response to treatment with antipsychotics.	Response to antipsychotic treatment	494 European ancestry cases, 244 African American and other ancestry cases	NA	6p21.33	intergenic	rs12526186-?	NR	3E-6	(risperidone)	9.0	[NR] % variance	Affymetrix, Perlegen [492900]	N
600	chr6_mann_hap4	2085570	2085571	rs3094117	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine without aura	7,107 European ancestry cases, 69,427 European ancestry controls	NA	6p21.33	intergenic	rs3094117-?	0.77	2E-6		1.12	[1.06-1.18]	Affymetrix, Illumina [~ 2300000] (imputed)	N
600	chr6_mann_hap4	2093884	2093885	rs3129977	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p21.33	HCG20	rs3129977-A	NR	8E-11		6.498	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
601	chr6_mann_hap4	2101012	2101013	rs147206302	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	6p21.33	HCG20	rs147206302-T	0.0032	7E-9		0.1843882	[0.12-0.25] unit decrease	Affymetrix [~ 2500000] (imputed)	N
601	chr6_mann_hap4	2106550	2106551	rs3131043	31089142	Law PJ	2019-05-14	Nat Commun	Association analyses identify 31 new risk loci for colorectal cancer susceptibility.	Colorectal cancer	31,197 European ancestry cases, 61,770 European ancestry controls	NA	6p21.33	NR	rs3131043-G	0.43	3E-8		1.07	[1.05-1.1]	Affymetrix, Illumina [> 10000000] (imputed)	N
601	chr6_mann_hap4	2106941	2106942	rs3129981	31358989	Gelernter J	2019-07-29	Nat Neurosci	Genome-wide association study of post-traumatic stress disorder reexperiencing symptoms in >165,000 US veterans.	Post-traumatic stress disorder (re-experiencing symptoms)	146,660 European ancestry individuals, 19,983 African American individuals	117,900 European ancestry individuals	6p21.33	NR	rs3129981-?	NR	2E-7	(AA)	0.347197	[NR] unit increase	Affymetrix [49134253] (imputed)	N
601	chr6_mann_hap4	2109656	2109657	rs3129984	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p21.33	NR	rs3129984-T	0.1179	8E-6	(EA)	0.0465	[0.026-0.067] unit decrease	Illumina [~ 11800000] (imputed)	N
601	chr6_mann_hap4	2110177	2110178	rs3131057	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	6p21.33	HCG20, LINC00243	rs3131057-C	0.6028	8E-17		0.03073045	[0.024-0.038] unit decrease	Affymetrix [~ 2500000] (imputed)	N
601	chr6_mann_hap4	2110218	2110219	rs11961980	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	6p21.33	HCG20, LINC00243	rs11961980-T	0.0038	2E-12		0.2133187	[0.15-0.27] unit decrease	Affymetrix [~ 2500000] (imputed)	N
601	chr6_mann_hap4	2110218	2110219	rs11961980	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	6p21.33	HCG20, LINC00243	rs11961980-T	0.0038	1E-11		0.206328	[0.15-0.27] unit decrease	Affymetrix [~ 2500000] (imputed)	N
601	chr6_mann_hap4	2111375	2111376	rs3131060	25827949	Kunz M	2015-05-04	Exp Dermatol	Genome-wide association study identifies new susceptibility loci for cutaneous lupus erythematosus.	Cutaneous lupus erythematosus	151 European ancestry cases, 1,288 European ancestry controls	219 European ancestry cases, 262 European ancestry controls	6p21.33	FLOT1	rs3131060-A	0.112	1E-13		2.3	[1.71-3.11]	Affymetrix [906600]	N
601	chr6_mann_hap4	2111977	2111978	rs3131064	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p21.33	LINC00243	rs3131064-T	NR	2E-9		5.983	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
601	chr6_mann_hap4	2112559	2112559	rs368739359	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	LINC00243	rs368739359-TAATG	NR	3E-8		0.0252092	[0.016-0.034] unit increase	Affymetrix [323123] (imputed)	N
601	chr6_mann_hap4	2113663	2113664	rs1264376	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	LINC00243	rs1264376-A	NR	2E-13		0.0302583	[0.022-0.038] unit decrease	Affymetrix [323858] (imputed)	N
601	chr6_mann_hap4	2113663	2113664	rs1264376	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	LINC00243	rs1264376-A	NR	3E-12		0.0288183	[0.021-0.037] unit decrease	Affymetrix [127266] (imputed)	N
601	chr6_mann_hap4	2113979	2113980	rs10947096	29534301	Nishida N	2018-03-13	Hepatology	Key HLA-DRB1-DQB1 haplotypes and role of the BTNL2 gene for response to a hepatitis B vaccine.	Response to hepatitis B vaccine	107 Japanese ancestry low responder individuals, 351 Japanese ancestry intermediate responder individuals, 735 Japanese ancestry high responder individuals	NA	6p21.33	DDR1	rs10947096-?		2E-6		0.197	unit increase	Affymetrix [427664]	N
601	chr6_mann_hap4	2114288	2114289	rs3129987	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Stable angina pectoris	18,833 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	6p21.33		rs3129987-C	0.884926231	3E-14		0.14236389	[0.11-0.18] unit decrease	Illumina [13427711] (imputed)	N
601	chr6_mann_hap4	2114295	2114296	rs1264375	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	LINC00243	rs1264375-C	NR	1E-9		0.0209768	[0.014-0.028] unit decrease	Affymetrix [323858] (imputed)	N
601	chr6_mann_hap4	2115029	2115030	rs4587207	25469926	Gottlieb DJ	2014-12-02	Mol Psychiatry	Novel loci associated with usual sleep duration: the CHARGE Consortium Genome-Wide Association Study.	Sleep duration	47,180 European ancestry individuals	4,771 African American individuals	6p21.33	FLOT1, LINC00243, IER3	rs4587207-G	0.20	2E-8	(EA)	3.14	[2.04-4.24] unit decrease	Affymetrix, Illumina [2033301]	N
601	chr6_mann_hap4	2118371	2118372	rs1264371	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p21.33	NR	rs1264371-T	0.352	2E-8	(IFNAR2_of_CD20p)			Illumina [5084123] (imputed)	N
601	chr6_mann_hap4	2118785	2118786	rs114376405	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p21.33	NR	rs114376405-?	NR	2E-6		0.2339	[0.14-0.33] unit increase	Illumina [at least 560000] (imputed)	N
601	chr6_mann_hap4	2121398	2121399	rs4713376	30958311	Tao F	2019-04-03	J Neuromuscul Dis	Modifier Gene Candidates in Charcot-Marie-Tooth Disease Type 1A: A Case-Only Genome-Wide Association Study.	Decreased fine motor function in Charcot-Marie-Tooth disease 1A (eating with utensils)	132 European ancestry severe cases, 288 European ancestry mild cases	NA	6p21.33	HCG20, LINC00243, TUBB, FLOT1, IER3	rs4713376-C	0.174	1E-6		3.288	[2.041-5.297]	Illumina [600000]	N
601	chr6_mann_hap4	2122441	2122442	rs3130783	23455636	Fritsche LG	2013-03-03	Nat Genet	Seven new loci associated with age-related macular degeneration.	Age-related macular degeneration	6,713 European ancestry cases, 48,402 European ancestry contols, 110 Southern Indian ancestry cases, 119 Southern Indian ancestry controls, 827 Japanese ancestry cases, 3,323 Japanese ancestry controls	9,070 European ancestry cases, 7,683 European ancestry contols, 461 East Asian ancestry cases, 547 East Asian ancestry controls	6p21.33	IER3, DDR1	rs3130783-A	0.79	2E-11		1.16	[1.11-1.20]	Affymetrix, Illumina [2442884] (imputed)	N
601	chr6_mann_hap4	2123215	2123216	rs151302046	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.33	NR	rs151302046-A	0.011	6E-12		0.591132	[0.42-0.76] unit increase	Affymetrix [up to 8900000] (imputed)	N
601	chr6_mann_hap4	2123685	2123686	rs1264363	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p21.33	NR	rs1264363-?	NR	8E-16		0.1077	[0.081-0.134] unit decrease	Illumina [at least 560000] (imputed)	N
601	chr6_mann_hap4	2126367	2126368	rs73437885	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	6p21.33	NR	rs73437885-?	NR	8E-6		0.0081424	[0.0046-0.0117] unit increase	Affymetrix [805426] (imputed)	N
601	chr6_mann_hap4	2128372	2128372	rs36091944	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	LINC00243	rs36091944-C	NR	3E-8		0.0230514	[0.015-0.031] unit decrease	Affymetrix [321016] (imputed)	N
601	chr6_mann_hap4	2130086	2130087	rs886424	25936594	Tomer Y	2015-04-27	J Autoimmun	Genome wide identification of new genes and pathways in patients with both autoimmune thyroiditis and type 1 diabetes.	Type 1 diabetes and autoimmune thyroid diseases	346 European ancestry cases, 727 European ancestry controls	185 European ancestry cases, 340 European ancestry controls	6p21.33	IER3, DDR1	rs886424-A	NR	3E-14		2.2107		Illumina [514008]	N
601	chr6_mann_hap4	2130086	2130087	rs886424	22688191	Bergen SE	2012-06-12	Mol Psychiatry	Genome-wide association study in a Swedish population yields support for greater CNV and MHC involvement in schizophrenia compared with bipolar disorder.	Bipolar disorder and schizophrenia	2,111 European ancestry schizophrenia cases, 836 European ancestry bipolar disorder cases, 2,535 European ancestry controls	NA	6p21.33	other genes, MHC	rs886424-?	NR	9E-7		1.37	[NR]	Affymetrix [745006]	N
601	chr6_mann_hap4	2131571	2131572	rs142090224	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Chickenpox	107,769 European ancestry cases, 15,982 European ancestry controls	NA	6p21.33	NR	rs142090224-?	NR	3E-6		0.1169	[0.068-0.166] unit decrease	Illumina [at least 560000] (imputed)	N
601	chr6_mann_hap4	2132277	2132278	rs1264355	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	6p21.33	NR	rs1264355-?	NR	2E-7		0.0847	[0.053-0.117] unit decrease	Illumina [at least 560000] (imputed)	N
601	chr6_mann_hap4	2132428	2132429	rs574050376	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	LINC00243	rs574050376-T	NR	5E-9		0.082304	[0.055-0.11] unit decrease	Affymetrix [321016] (imputed)	N
601	chr6_mann_hap4	2132428	2132429	rs574050376	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.33	NR	rs574050376-T	0.02613	2E-8	(AFMID)	0.0124	NR unit increase	Illumina [1671387] (imputed)	N
601	chr6_mann_hap4	2135850	2135851	rs1264353	27659466	van der Harst P	2016-09-27	J Am Coll Cardiol	52 Genetic Loci Influencing Myocardial Mass.	QRS complex (Cornell)	up to 58,172 European ancestry individuals, up to 690 Orcadian (founder/genetic isolate) individuals	13,263 European ancestry individuals, 3,603 African American individuals, 4,619 Indian ancestry individuals	6p21.33	NR	rs1264353-?	NR	7E-6	(EA)			Affymetrix, Illumina, Perlegen [2766983] (imputed)	N
601	chr6_mann_hap4	2139282	2139283	rs13208886	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p21.33	NR	rs13208886-?	NR	9E-12		0.1216	[0.087-0.156] unit decrease	Illumina [at least 560000] (imputed)	N
601	chr6_mann_hap4	2140205	2140206	rs1264351	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	6p21.33	AK098012	rs1264351-C	0.1265	2E-8	(EA)	0.0032	[0.002-0.0044] unit decrease	Affymetrix [NR] (imputed)	N
601	chr6_mann_hap4	2140205	2140206	rs1264351	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	6p21.33	AK098012	rs1264351-C	0.126	9E-10		0.0033	[0.0021-0.0045] unit decrease	Affymetrix [NR] (imputed)	N
601	chr6_mann_hap4	2142435	2142436	rs4248151	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.33		rs4248151-T	0.722	2E-11				Affymetrix [10369434] (imputed)	N
601	chr6_mann_hap4	2143260	2143261	rs7772131	22566498	Turner ST	2012-05-07	Hypertension	Genomic association analysis identifies multiple loci influencing antihypertensive response to an angiotensin II receptor blocker.	Response to angiotensin II receptor blocker therapy	198 European ancestry hypertensive individuals, 193 African American hypertensive individuals	NA	6p21.33	C6orf214	rs7772131-?	NR	3E-6	(AA)	6.73	[0.89-12.57] unit decrease	Affymetrix [~ 2300000] (imputed)	N
601	chr6_mann_hap4	2144634	2144635	rs1264350	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	6p21.33	IER3, DDR1	rs1264350-T	NR	1E-7		0.151743	[0.096-0.208] unit increase	Illumina [at least 950000] (imputed)	N
601	chr6_mann_hap4	2144748	2144749	rs1264349	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA	6p21.33	NR	rs1264349-?	NR	4E-6		0.0514	[0.03-0.073] unit decrease	Illumina [at least 560000] (imputed)	N
601	chr6_mann_hap4	2146080	2146081	rs7749924	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs7749924-C	0.851598582628062	8E-6	(IGP32)	0.2204	[0.12-0.32] unit increase	Illumina [~ 2500000] (imputed)	N
601	chr6_mann_hap4	2146364	2146365	rs78868683	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs78868683-?		3E-7		1.05	[1.03-1.08]	Illumina [7645193] (imputed)	N
601	chr6_mann_hap4	2146364	2146365	rs78868683	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs78868683-?		1E-7		1.68	[1.39-2.04]	Illumina [7645193] (imputed)	N
601	chr6_mann_hap4	2146411	2146412	rs3130646	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.33	Intergenic	rs3130646-G	NR	3E-6		0.0231949	[0.013-0.033] unit decrease	Illumina [13520550] (imputed)	N
601	chr6_mann_hap4	2146784	2146785	rs1264347	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in diabetes	70,762 European ancestry individuals, 20,967 African American individuals	NA	6p21.33	AK098012	rs1264347-T	0.109	1E-12		1.01	[0.73-1.29] unit decrease	Affymetrix [NR] (imputed)	N
601	chr6_mann_hap4	2146784	2146785	rs1264347	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.33	LINC00243	rs1264347-T	0.1326	5E-7		0.0552	[0.034-0.077] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
601	chr6_mann_hap4	2147486	2147487	rs9501030	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	6p21.33	IER3, DDR1	rs9501030-A	0.16	4E-10		6.27	z-score increase	Affymetrix [4311822] (imputed)	N
601	chr6_mann_hap4	2147486	2147487	rs9501030	20848476	Haritunians T	2010-11-01	Inflamm Bowel Dis	Genetic predictors of medically refractory ulcerative colitis.	Ulcerative colitis	324 European ancestry medically refractory ulcerative colitis cases, 537 European ancestry non-medically refractory ulcerative colitis cases, 2,601 European ancestry controls	NA	6p21.33	IER3, GTF2H4, FLOT1, VARS2, MIR588, DDR1	rs9501030-A	NR	4E-6	(Analysis II)			Illumina [313720]	N
601	chr6_mann_hap4	2156848	2156849	rs2517582	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG27H4.8	rs2517582-T	NR	3E-11		0.019246	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
601	chr6_mann_hap4	2156848	2156849	rs2517582	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG27H4.8	rs2517582-T	NR	8E-11		0.0187782	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
601	chr6_mann_hap4	2156848	2156849	rs2517582	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG27H4.8	rs2517582-T	NR	4E-9		0.0185153	[0.012-0.025] unit decrease	Affymetrix [323123] (imputed)	N
601	chr6_mann_hap4	2156848	2156849	rs2517582	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG27H4.8	rs2517582-T	NR	3E-9		0.0173144	[0.012-0.023] unit increase	Affymetrix [321169] (imputed)	N
601	chr6_mann_hap4	2156848	2156849	rs2517582	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	6p21.33	NR	rs2517582-T	0.383721	5E-18		0.0135974	[0.011-0.016] unit increase	Affymetrix [16578495] (imputed)	N
601	chr6_mann_hap4	2156848	2156849	rs2517582	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	6p21.33	NR	rs2517582-T	0.38430299999999995	2E-18		0.0277124	[0.022-0.033] unit increase	Affymetrix [16580851] (imputed)	N
601	chr6_mann_hap4	2156848	2156849	rs2517582	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.33	XXbac-BPG27H4.8	rs2517582-T	0.4084	4E-6		0.0319	[0.018-0.045] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
601	chr6_mann_hap4	2156848	2156849	rs2517582	28468790	Agopian AJ	2017-06-01	Circ Cardiovasc Genet	Genome-Wide Association Studies and Meta-Analyses for Congenital Heart Defects.	Conotruncal heart defects (maternal effects)	up to 838 European ancestry trios	NA	6p21.33	GTF2H4, VARS2	rs2517582-?	NR	3E-7		1.174787	[1.104793-1.249214]	Illumina [at least 4756722] (imputed)	N
601	chr6_mann_hap4	2158142	2158143	rs2517580	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG27H4.8	rs2517580-A	NR	4E-8		0.0175646	[0.011-0.024] unit increase	Affymetrix [319769] (imputed)	N
601	chr6_mann_hap4	2165966	2165967	rs2844662	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.33		rs2844662-C	0.624	2E-43				Affymetrix [10369434] (imputed)	N
601	chr6_mann_hap4	2166435	2166436	rs139507938	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1a levels	3,522 Finnish ancestry individuals	NA	6p21.33	NR	rs139507938-G	NR	7E-6		0.907	[0.51-1.3] SD units increase	NR [10700000] (imputed)	N
601	chr6_mann_hap4	2168460	2168461	rs2263298	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p21.33	NR	rs2263298-?	NR	3E-9		0.0842	[0.056-0.112] unit decrease	Illumina [at least 560000] (imputed)	N
601	chr6_mann_hap4	2171847	2171848	rs2844660	28468790	Agopian AJ	2017-06-01	Circ Cardiovasc Genet	Genome-Wide Association Studies and Meta-Analyses for Congenital Heart Defects.	Congenital heart disease (maternal effect)	1,119 European ancestry trios	NA	6p21.33	intergenic	rs2844660-?	NR	1E-6		1.365322	[1.204119-1.548106]	Illumina [at least 4756722] (imputed)	N
601	chr6_mann_hap4	2172218	2172219	rs11759095	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	6p21.33	NR	rs11759095-?	NR	1E-14		7.7	NR z score decrease	Illumina [at least 830937] (imputed)	N
601	chr6_mann_hap4	2172538	2172539	rs758778	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.33		rs758778-T	0.759	4E-32				Affymetrix [10369434] (imputed)	N
601	chr6_mann_hap4	2172538	2172539	rs758778	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p21.33		rs758778-T	0.759	3E-25				Affymetrix [10369434] (imputed)	N
601	chr6_mann_hap4	2180150	2180151	rs2535326	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	RN7SKP186	rs2535326-T	NR	1E-10		0.0207397	[0.014-0.027] unit increase	Affymetrix [323858] (imputed)	N
601	chr6_mann_hap4	2180150	2180151	rs2535326	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	RN7SKP186	rs2535326-T	NR	3E-9		0.019109	[0.013-0.025] unit increase	Affymetrix [127266] (imputed)	N
601	chr6_mann_hap4	2180206	2180207	rs3130792	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DDR1	5,364 Icelandic ancestry individuals	NA	6p21.33		rs3130792-T	0.4372	7E-54		0.279081	[0.24-0.31] unit increase	Illumina [7506463] (imputed)	N
601	chr6_mann_hap4	2186130	2186131	rs2535341	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p21.33	DDR1-AS1	rs2535341-C	NR	2E-8		0.0208511	[0.014-0.028] unit decrease	Affymetrix [323858] (imputed)	N
601	chr6_mann_hap4	2193647	2193648	rs1264332	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	6p21.33	NR	rs1264332-C	0.35264300000000004	2E-22		0.0233666	[0.019-0.027] unit increase	Affymetrix [16583148] (imputed)	N
601	chr6_mann_hap4	2196337	2196338	rs7756521	20041166	Fellay J	2009-12-24	PLoS Genet	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA		VARS2, DDR1, DPCR1	rs7756521-?	NR	1E-6	(progression)			Illumina [NR]	N
601	chr6_mann_hap4	2197208	2197209	rs885910	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	DDR1	rs885910-T	NR	9E-9		0.0184374	[0.012-0.025] unit decrease	Affymetrix [323858] (imputed)	N
601	chr6_mann_hap4	2197208	2197209	rs885910	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	DDR1	rs885910-T	NR	4E-8		0.0176635	[0.011-0.024] unit decrease	Affymetrix [127266] (imputed)	N
601	chr6_mann_hap4	2205978	2205979	rs1264322	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking initiation (ever regular vs never regular)	up to 433,216 European ancestry individuals	NA	6p21.33	DDR1	rs1264322-A	0.146	2E-8		0.0171	[0.011-0.023] unit decrease	Illumina [~ 250000] (imputed)	N
601	chr6_mann_hap4	2206338	2206339	rs7743661	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p21.33	DDR1	rs7743661-C	0.25	1E-6	(Turkish)	1.62	[1.33-1.97]	Illumina [up to 547389]	N
601	chr6_mann_hap4	2214422	2214423	rs2524236	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	QRS duration	3,274 African American individuals, 13,420 Hispanic/Latino individuals, 126 Asian ancestry individuals, 226 Native American ancestry individuals	NA	6p21.33	HCG22	rs2524236-?	NR	1E-10		0.6324871	[0.44-0.83] unit decrease	Illumina [26566045] (imputed)	N
601	chr6_mann_hap4	2221586	2221587	rs111782145	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	6p21.33	CDSN, DPCR1, GTF2H4	rs111782145-C	NR	2E-8	(Chinese)	1.2300123	[1.16-1.3]	Affymetrix, Illumina [up to 5107227] (imputed)	N
601	chr6_mann_hap4	2224230	2224231	rs1052693	23028341	Yang X	2012-09-13	PLoS Genet	Genome-wide association study for serum complement C3 and C4 levels in healthy Chinese subjects.	Complement C3 and C4 levels	1,999 Han Chinese ancestry male individuals	1,496 Han Chinese ancestry male individuals	6p21.33	HLA-A	rs1052693-G	0.36	3E-48	(Serum level of C4)	0.1	[0.080-0.120] g/L increase	Illumina [1940245] (imputed)	N
601	chr6_mann_hap4	2227714	2227715	rs886420	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p21.33	GTF2H4	rs886420-A	0.311	2E-24				Illumina [118177]	N
601	chr6_mann_hap4	2228065	2228066	rs1264308	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Squamous cell lung carcinoma	8,350 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	6p21.33	NR	rs1264308-T	NR	6E-10		1.29	[1.19-1.40]	NR [NR] (imputed)	N
601	chr6_mann_hap4	2228065	2228066	rs1264308	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Non-small cell lung cancer	27,120 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	6p21.33	NR	rs1264308-T	NR	2E-7		1.16	[1.1-1.23]	NR [NR] (imputed)	N
602	chr6_mann_hap4	2232278	2232279	rs146114215	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.33		rs146114215-G	0.995	1E-22				Affymetrix [10369434] (imputed)	N
602	chr6_mann_hap4	2232278	2232279	rs146114215	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	6p21.33		rs146114215-G	0.995	9E-15				Affymetrix [10369434] (imputed)	N
602	chr6_mann_hap4	2232278	2232279	rs146114215	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	6p21.33		rs146114215-G	0.995	1E-16				Affymetrix [10369434] (imputed)	N
602	chr6_mann_hap4	2232278	2232279	rs146114215	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs146114215-G	0.995	5E-26				Affymetrix [10369434] (imputed)	N
602	chr6_mann_hap4	2235545	2235546	rs118124843	31537649	Salem RM	2019-09-19	J Am Soc Nephrol	Genome-Wide Association Study of Diabetic Kidney Disease Highlights Biology Involved in Glomerular Basement Membrane Collagen.	Microalbuminuria in type 1 diabetes	2,447 European ancestry cases, 12,113 European ancestry controls	NA	6p21.33	DDR1, VARS2	rs118124843-T	0.011	4E-8		3.79	[NR]	Illumina [up to 49000000] (imputed)	N
602	chr6_mann_hap4	2238563	2238564	rs2074506	33909500	Moll M	2021-04-28	Am J Physiol Lung Cell Mol Physiol	A Systematic Analysis of Protein-altering Exonic Variants in Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease	up to 31,465 European ancestry cases, up to 203,688 European ancestry controls, up to 1,413 African ancestry cases, up to 6,080 African ancestry controls, up to 287 East Asian ancestry cases, up to 7,484 East Asian ancestry controls, up to 61 Hispanic cases, up to 613 Hispanic controls	NA	6p21.33	VARS2	rs2074506-G	0.65	3E-7		1.06	[1.03 -1.08]	Illumina [at least 109036]	N
602	chr6_mann_hap4	2238951	2238952	rs753725	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	6p21.33	VARS2	rs753725-T	0.4062	1E-9		0.0205	[0.014-0.027] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
602	chr6_mann_hap4	2238951	2238952	rs753725	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	6p21.33	VARS2	rs753725-T	0.4562	3E-7		0.020761	[0.013-0.029] mg/dL increase	Affymetrix, Illumina [8217339] (imputed)	N
602	chr6_mann_hap4	2245854	2245855	rs2532929	28877031	Zhang G	2017-09-07	N Engl J Med	Genetic Associations with Gestational Duration and Spontaneous Preterm Birth.	Gestational age at birth (maternal effect)	43,568 European ancestry mothers	8,643 European ancestry mothers	6p21.33	SFTA2, VARS2, DPCR1	rs2532929-G	0.397	2E-6		0.622	[NR] unit decrease	Illumina [15635593] (imputed)	N
602	chr6_mann_hap4	2247730	2247731	rs3095152	32771030	Tangtanatakul P	2020-08-08	Arthritis Res Ther	Meta-analysis of genome-wide association study identifies FBN2 as a novel locus associated with systemic lupus erythematosus in Thai population.	Systemic lupus erythematosus	487 Thai cases, 1,606 Thai controls	405 Thai cases, 1,590 Thai controls	6p21.33	SFTA2	rs3095152-A	0.03	6E-7		2.4584	[NR]	Illumina [421909] (imputed)	N
602	chr6_mann_hap4	2248174	2248175	rs2253705	35215271	Almandil NB	2022-01-27	Pharmaceuticals (Basel)	Integration of Transcriptome and Exome Genotyping Identifies Significant Variants with Autism Spectrum Disorder.	Autism spectrum disorder	70 Arab ancestry cases, 132 Arab ancestry controls	NA	6p21.33	NA	rs2253705-A	0.125	4E-6		3.706	[2.086-6.583]	Illumina [243345]	N
602	chr6_mann_hap4	2248507	2248508	rs2253718	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	Y_RNA	rs2253718-T	NR	3E-11		0.019062	[0.013-0.025] unit decrease	Affymetrix [319769] (imputed)	N
602	chr6_mann_hap4	2248507	2248508	rs2253718	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	Y_RNA	rs2253718-T	NR	8E-10		0.0195334	[0.013-0.026] unit decrease	Affymetrix [323858] (imputed)	N
602	chr6_mann_hap4	2248507	2248508	rs2253718	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	Y_RNA	rs2253718-T	NR	3E-10		0.0180687	[0.012-0.024] unit decrease	Affymetrix [319769] (imputed)	N
602	chr6_mann_hap4	2248507	2248508	rs2253718	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	Y_RNA	rs2253718-T	NR	3E-8		0.0176831	[0.011-0.024] unit decrease	Affymetrix [127266] (imputed)	N
602	chr6_mann_hap4	2248507	2248508	rs2253718	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	Y_RNA	rs2253718-T	NR	5E-11		0.0204362	[0.014-0.027] unit increase	Affymetrix [323123] (imputed)	N
602	chr6_mann_hap4	2248507	2248508	rs2253718	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	Y_RNA	rs2253718-T	NR	3E-11		0.0191888	[0.014-0.025] unit decrease	Affymetrix [321169] (imputed)	N
602	chr6_mann_hap4	2251523	2251523	rs539017487	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	6p21.33	NR	rs539017487-GT	0.365568	4E-26		0.0391332	[0.033-0.045] unit increase	Affymetrix [16577424] (imputed)	N
602	chr6_mann_hap4	2279917	2279918	rs3131934	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p21.33	NR	rs3131934-?	NR	6E-8		5.421	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
602	chr6_mann_hap4	2280296	2280297	rs138678612	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	6p21.33	NR	rs138678612-G	0.0217	1E-8		1.1235955	[1.08-1.16]	Affymetrix, Illumina [NR] (imputed)	N
602	chr6_mann_hap4	2281867	2281868	rs3095089	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCG21	rs3095089-T	NR	3E-13		0.0287765	[0.021-0.036] unit decrease	Affymetrix [323858] (imputed)	N
602	chr6_mann_hap4	2281867	2281868	rs3095089	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HCG21	rs3095089-T	NR	4E-12		0.0272715	[0.02-0.035] unit decrease	Affymetrix [127266] (imputed)	N
602	chr6_mann_hap4	2281867	2281868	rs3095089	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p21.33	NR	rs3095089-?	NR	8E-13		0.0835	[0.061-0.106] unit decrease	Illumina [at least 560000] (imputed)	N
602	chr6_mann_hap4	2281937	2281938	rs3131933	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.33		rs3131933-T	0.474	5E-17				Affymetrix [10369434] (imputed)	N
602	chr6_mann_hap4	2281937	2281938	rs3131933	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.33	NR	rs3131933-T	0.808	7E-9	(conditional)	0.891	[0.85-0.93]	Illumina [11270530] (imputed)	N
602	chr6_mann_hap4	2284733	2284734	rs3095086	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCG21	rs3095086-A	NR	1E-10		0.0225432	[0.016-0.029] unit decrease	Affymetrix [323858] (imputed)	N
602	chr6_mann_hap4	2284733	2284734	rs3095086	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HCG21	rs3095086-A	NR	6E-10		0.0216316	[0.015-0.028] unit decrease	Affymetrix [127266] (imputed)	N
602	chr6_mann_hap4	2285802	2285803	rs3131781	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p21.33	NR	rs3131781-G	0.1445	9E-9		0.0097	[0.0064-0.013] unit decrease	NR [7666894] (imputed)	N
602	chr6_mann_hap4	2286953	2286954	rs9368649	30626913	Amare AT	2019-01-09	Mol Psychiatry	Bivariate genome-wide association analyses of the broad depression phenotype combined with major depressive disorder, bipolar disorder or schizophrenia reveal eight novel genetic loci for depression.	Broad depression or major depressive disorder (self-reported)	9,240 European ancestry broad depression cases, 9,519 European ancestry broad depression controls, 51,258 European ancestry individuals, 75,607 European ancestry self-reported major depressive disorder cases, 231,747 European ancestry self-reported major depressive disorder controls	322,580 individuals	6p21.33	MUC21	rs9368649-A	0.14	1E-8				Affymetrix, Illumina [at least 918921] (imputed)	N
602	chr6_mann_hap4	2286953	2286954	rs9368649	23284291	Hancock DB	2012-12-20	PLoS Genet	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (smoking interaction)	50,047 European ancestry individuals	NA	6p21.33	MUC21, DPCR1	rs9368649-A	NR	1E-7	(FEV1/FVC, Pack-years)			NR [~ 2500000] (imputed)	N
602	chr6_mann_hap4	2286953	2286954	rs9368649	23284291	Hancock DB	2012-12-20	PLoS Genet	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (smoking interaction)	50,047 European ancestry individuals	NA	6p21.33	MUC21, DPCR1	rs9368649-A	NR	1E-7	(FEV1/FVC, Ever-smoking)			NR [~ 2500000] (imputed)	N
602	chr6_mann_hap4	2288457	2288458	rs2530710	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs2530710-?		4E-7		1.0416667	[1.03-1.06]	Illumina [7645193] (imputed)	N
602	chr6_mann_hap4	2288457	2288458	rs2530710	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs2530710-?		1E-7		1.5151515	[1.3-1.75]	Illumina [7645193] (imputed)	N
602	chr6_mann_hap4	2293694	2293695	rs34853064	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.33	NR	rs34853064-?	NR	6E-9				Affymetrix [~ 8270000] (imputed)	N
602	chr6_mann_hap4	2295581	2295582	rs3094084	25827949	Kunz M	2015-05-04	Exp Dermatol	Genome-wide association study identifies new susceptibility loci for cutaneous lupus erythematosus.	Cutaneous lupus erythematosus	151 European ancestry cases, 1,288 European ancestry controls	219 European ancestry cases, 262 European ancestry controls	6p21.33	MUC21, TRIM39, RPP21	rs3094084-T	0.154	2E-11		2.3	[1.76-3.01]	Affymetrix [906600]	N
602	chr6_mann_hap4	2298135	2298136	rs2844678	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	683 Turkish ancestry cases, 1,721 Turkish ancestry controls	NA	6p21.33	MUC21	rs2844678-?	NR	2E-42				Illumina [4495750] (imputed)	N
602	chr6_mann_hap4	2298135	2298136	rs2844678	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	286 European ancestry cases, 2,652 European ancestry controls, 76 Han Chinese ancestry cases, 889 Han Chinese ancestry controls, 46 South Asian ancestry cases, 501 South Asian ancestry controls, 683 Turkish ancestry cases, 1,721 Turkish ancestry controls	NA	6p21.33	MUC21	rs2844678-?	NR	6E-47		2.71	NR	Illumina [up to 4495750] (imputed)	N
602	chr6_mann_hap4	2303217	2303218	rs9262397	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Unilateral cleft lip and palate	205 Asian ancestry cases, 315 European ancestry cases, 692 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	6p21.33	NR	rs9262397-?	NR	1E-6		1.75	[1.6-1.91]	Illumina [539000] (imputed)	N
602	chr6_mann_hap4	2307091	2307092	rs13211972	32276964	Shete S	2020-04-10	Cancer Res	A genome-wide association study identifies two novel susceptible regions for squamous cell carcinoma of the head and neck.	Oropharynx cancer	1,144 European ancestry cases, 4,493 European ancestry controls	2,328 European ancestry cases, 3,232 European ancestry controls	6p21.33	MUC21	rs13211972-A	0.05	1E-10		1.55	[1.36-1.77]	Illumina [7858089] (imputed)	N
602	chr6_mann_hap4	2309119	2309120	rs150184132	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs150184132-C	0.961	1E-9				Affymetrix [10369434] (imputed)	N
602	chr6_mann_hap4	2324682	2324683	rs149405105	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MUC22	rs149405105-A	NR	2E-8		0.0337227	[0.022-0.045] unit increase	Affymetrix [319769] (imputed)	N
602	chr6_mann_hap4	2324682	2324683	rs149405105	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	MUC22	rs149405105-A	NR	1E-8		0.0343316	[0.023-0.046] unit increase	Affymetrix [319769] (imputed)	N
602	chr6_mann_hap4	2324682	2324683	rs149405105	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.33	MUC22	rs149405105-A	NR	3E-10		0.0380088	[0.026-0.05] unit increase	Affymetrix [321114] (imputed)	N
602	chr6_mann_hap4	2324682	2324683	rs149405105	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	MUC22	rs149405105-A	NR	2E-9		0.0364062	[0.025-0.048] unit increase	Affymetrix [321169] (imputed)	N
602	chr6_mann_hap4	2330422	2330424	rs71757905	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Chickenpox	107,769 European ancestry cases, 15,982 European ancestry controls	NA	6p21.33	NR	rs71757905-?	NR	9E-6		0.1098	[0.062-0.158] unit increase	Illumina [at least 560000] (imputed)	N
602	chr6_mann_hap4	2330875	2330876	rs9394026	29031612	Hirata J	2017-10-12	J Invest Dermatol	Variants at HLA-A, HLA-C, and HLA-DQB1 Confer Risk of Psoriasis Vulgaris in Japanese.	Psoriasis vulgaris	282 Japanese ancestry cases, 426 Japanese ancestry controls	320 Japanese ancestry cases, 1,622 Japanese ancestry controls	6p21.33	HLA	rs9394026-G	0.197	7E-15		1.86	[1.59-2.18]	Illumina [6369185] (imputed)	N
602	chr6_mann_hap4	2332798	2332799	rs3869097	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.33		rs3869097-T	0.32183300000000004	2E-7		1.0237832	[1.01-1.03]	Affymetrix, Illumina [9851866] (imputed)	N
602	chr6_mann_hap4	2334160	2334161	rs1634726	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental longevity (mother's age at death)	52,776 middle-aged British individuals	NA	6p21.33	NR	rs1634726-?	NR	6E-6		0.032105	[0.018-0.046] unit increase	Affymetrix [9658292] (imputed)	N
602	chr6_mann_hap4	2336308	2336309	rs1632870	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MUC22	rs1632870-T	NR	5E-8		0.0227309	[0.015-0.031] unit increase	Affymetrix [323123] (imputed)	N
602	chr6_mann_hap4	2337332	2337333	rs139141104	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 142,336 Japanese ancestry controls	NA	6p21.33	MUC22	rs139141104-?	NR	1E-18		0.16637	[0.13-0.2] unit increase	Illumina [19707525] (imputed)	N
602	chr6_mann_hap4	2338003	2338004	rs114115115	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.33		rs114115115-T	0.937	4E-16				Affymetrix [10369434] (imputed)	N
602	chr6_mann_hap4	2338003	2338004	rs114115115	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cervical cancer	6,563 European ancestry cases, 410,350 European ancestry controls	NA	6p21.33		rs114115115-T	NR	6E-13		1.3463	NR	Affymetrix [7846216] (imputed)	N
602	chr6_mann_hap4	2338330	2338331	rs9380210	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.33		rs9380210-A	0.72	1E-24				Affymetrix [10369434] (imputed)	N
602	chr6_mann_hap4	2338330	2338331	rs9380210	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.33		rs9380210-A	0.72	7E-16				Affymetrix [10369434] (imputed)	N
602	chr6_mann_hap4	2338330	2338331	rs9380210	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p21.33		rs9380210-A	0.72	5E-18				Affymetrix [10369434] (imputed)	N
602	chr6_mann_hap4	2338366	2338367	rs1634729	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	118,886 East Asian ancestry individuals	NA	6p21.33		rs1634729-C	0.950931	3E-9		0.0534033	[0.036-0.071] unit decrease	Illumina [13474352] (imputed)	N
602	chr6_mann_hap4	2338366	2338367	rs1634729	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MUC22	rs1634729-T	NR	3E-9		0.0248876	[0.017-0.033] unit decrease	Affymetrix [319769] (imputed)	N
602	chr6_mann_hap4	2338366	2338367	rs1634729	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	MUC22	rs1634729-T	NR	6E-9		0.0242344	[0.016-0.032] unit decrease	Affymetrix [319769] (imputed)	N
602	chr6_mann_hap4	2338392	2338393	rs116071718	31066027	Nicoletti P	2019-05-07	Clin Pharmacol Ther	Shared genetic risk factors across carbamazepine-induced hypersensitivity reactions.	Carbamazepine-induced serious cutaneous adverse reaction	43 European ancestry cases, 10,701 European ancestry controls	NA	6p21.33	MUC22	rs116071718-?	NR	2E-6	(conditioned on rs192543598)	3.99	[2.25-7.05]	Illumina [5271349] (imputed)	N
602	chr6_mann_hap4	2339085	2339086	rs9394030	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	MUC22	rs9394030-A	NR	7E-9		0.0193287	[0.013-0.026] unit increase	Affymetrix [321169] (imputed)	N
602	chr6_mann_hap4	2341059	2341060	rs1632865	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.33		rs1632865-T	0.584	6E-30				Affymetrix [10369434] (imputed)	N
602	chr6_mann_hap4	2341856	2341857	rs2517554	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.33		rs2517554-C	0.386	7E-33				Affymetrix [10369434] (imputed)	N
602	chr6_mann_hap4	2342170	2342171	rs62399429	33531474	Burton CL	2021-02-02	Transl Psychiatry	Genome-wide association study of pediatric obsessive-compulsive traits: shared genetic risk between traits and disorder.	Obsessive-compulsive traits	5,018 European ancestry children and adolescents	NA	6p21.33	MUC22	rs62399429-?	NR	5E-6		0.131	[0.074-0.188] unit increase	Illumina [7870334] (imputed)	N
602	chr6_mann_hap4	2343246	2343247	rs566731348	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.33	NR	rs566731348-A	0.951	4E-12		1.889	[1.71-2.07]	Illumina [11270530] (imputed)	N
602	chr6_mann_hap4	2346049	2346050	rs9262549	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MUC22	rs9262549-G	NR	2E-14		0.0228763	[0.017-0.029] unit increase	Affymetrix [321016] (imputed)	N
602	chr6_mann_hap4	2346049	2346050	rs9262549	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MUC22	rs9262549-G	NR	4E-18		0.0282059	[0.022-0.035] unit increase	Affymetrix [323123] (imputed)	N
602	chr6_mann_hap4	2346671	2346672	rs12110481	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MUC22	rs12110481-T	NR	2E-14		0.0246712	[0.018-0.031] unit decrease	Affymetrix [323123] (imputed)	N
602	chr6_mann_hap4	2349778	2349779	rs3909113	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Sutterella)	1,068 Japanese ancestry individuals	NA	6p21.33	MUC22	rs3909113-G	0.29	3E-6		0.03	[0.017-0.043] unit decrease	Illumina [6380737] (imputed)	N
602	chr6_mann_hap4	2349853	2349854	rs10947124	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	MUC22	rs10947124-T	NR	2E-9		0.0181143	[0.012-0.024] unit increase	Affymetrix [321169] (imputed)	N
602	chr6_mann_hap4	2350036	2350037	rs59356242	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LRPAP1	5,365 Icelandic ancestry individuals	NA	6p21.33		rs59356242-A	0.0137	2E-11		0.546071	[0.39-0.7] unit increase	Illumina [7506463] (imputed)	N
602	chr6_mann_hap4	2350370	2350371	rs6933349	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6p21.33		rs6933349-?	NR	1E-8		0.926525	[0.9-0.95]	NR [685523]	N
602	chr6_mann_hap4	2350458	2350459	rs7768644	26151496	Chen PL	2015-07-07	Nat Commun	Genetic determinants of antithyroid drug-induced agranulocytosis by human leukocyte antigen genotyping and genome-wide association study.	Thionamide-induced agranulocytosis in Graves' disease	21 East Asian ancestry cases with agranulocytosis, 662 East Asian ancestry cases without agranulocytosis	21 East Asian ancestry cases with agranulocytosis, 546 East Asian ancestry cases without agranulocytosis	6p21.33	HLA	rs7768644-A	0.091	3E-13	(trend)	5.01	[3.1-8.1] (allelic)	Affymetrix [522980]	N
602	chr6_mann_hap4	2350700	2350701	rs28732081	30037793	Haapasalo K	2018-09-21	Infect Immun	The Psoriasis Risk Allele <i>HLA-C*06:02</i> Shows Evidence of Association with Chronic or Recurrent Streptococcal Tonsillitis.	Tonsillitis	95 Finnish cases, 504 Finnish controls	NA	6p21.33	HLA-C, HLA-B	rs28732081-?		6E-6		4.7		Illumina [100000]	N
602	chr6_mann_hap4	2350809	2350810	rs3869098	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs3869098-A	0.528	2E-32				Affymetrix [10369434] (imputed)	N
602	chr6_mann_hap4	2350809	2350810	rs3869098	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MUC22	rs3869098-G	NR	6E-19		0.0251596	[0.02-0.031] unit increase	Affymetrix [319769] (imputed)	N
602	chr6_mann_hap4	2350809	2350810	rs3869098	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MUC22	rs3869098-G	NR	4E-11		0.0207579	[0.015-0.027] unit increase	Affymetrix [323858] (imputed)	N
602	chr6_mann_hap4	2350809	2350810	rs3869098	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	MUC22	rs3869098-G	NR	6E-18		0.0244083	[0.019-0.03] unit increase	Affymetrix [319769] (imputed)	N
602	chr6_mann_hap4	2350809	2350810	rs3869098	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	MUC22	rs3869098-G	NR	6E-10		0.0194883	[0.013-0.026] unit increase	Affymetrix [127266] (imputed)	N
602	chr6_mann_hap4	2350809	2350810	rs3869098	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MUC22	rs3869098-G	NR	1E-13		0.0208831	[0.015-0.026] unit decrease	Affymetrix [321016] (imputed)	N
602	chr6_mann_hap4	2350809	2350810	rs3869098	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MUC22	rs3869098-G	NR	3E-16		0.0252592	[0.019-0.031] unit decrease	Affymetrix [323123] (imputed)	N
602	chr6_mann_hap4	2350809	2350810	rs3869098	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	MUC22	rs3869098-G	NR	2E-15		0.0228249	[0.017-0.028] unit increase	Affymetrix [321169] (imputed)	N
602	chr6_mann_hap4	2350884	2350885	rs4248153	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MUC22	rs4248153-G	NR	3E-11		0.0193381	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
602	chr6_mann_hap4	2350884	2350885	rs4248153	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	MUC22	rs4248153-G	NR	2E-10		0.018489	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
602	chr6_mann_hap4	2350884	2350885	rs4248153	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MUC22	rs4248153-G	NR	2E-15		0.0230515	[0.017-0.029] unit decrease	Affymetrix [321016] (imputed)	N
602	chr6_mann_hap4	2350973	2350974	rs4248154	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.33		rs4248154-C	0.831	5E-19				Affymetrix [10369434] (imputed)	N
602	chr6_mann_hap4	2350973	2350974	rs4248154	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Prostate cancer	10,792 European ancestry cases, 410,350 European ancestry controls	NA	6p21.33		rs4248154-T	NR	4E-8		1.1076651	NR	Affymetrix [7846216] (imputed)	N
602	chr6_mann_hap4	2350973	2350974	rs4248154	21900946	Nakabayashi K	2011-09-08	J Hum Genet	Identification of independent risk loci for Graves' disease within the MHC in the Japanese population.	Graves' disease	1,119 Japanese ancestry cases, 2,718 Japanese ancestry controls	432 Japanese ancestry cases, 1,157 Japanese ancestry controls	6p21.33	MHC	rs4248154-C	0.54	1E-13		1.38	[1.27-1.50]	Perlegen [268068]	N
602	chr6_mann_hap4	2351826	2351827	rs34416364	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6p21.33	NR	rs34416364-G	0.90442	8E-9		1.0608954	[1.04-1.08]	Affymetrix [15688218] (imputed)	N
602	chr6_mann_hap4	2351826	2351827	rs34416364	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	6p21.33	NR	rs34416364-?	NR	4E-6		0.0711	[0.041-0.101] unit decrease	Illumina [at least 560000] (imputed)	N
602	chr6_mann_hap4	2353789	2353790	rs11753208	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	MUC22	rs11753208-T	0.08492462	2E-13	(EA, MHC class I polypeptide-related sequence A)	0.5826	[0.43-0.74] unit decrease	Affymetrix [509946]	N
602	chr6_mann_hap4	2353821	2353822	rs9262555	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	6p21.33	NR	rs9262555-?	NR	6E-13		7.194	NR z score decrease	Illumina [at least 830937] (imputed)	N
602	chr6_mann_hap4	2353847	2353848	rs141397370	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LRPAP1	5,361 Icelandic ancestry individuals	NA	6p21.33		rs141397370-T	0.01079	3E-25		0.911048	[0.74-1.08] unit increase	Illumina [7506463] (imputed)	N
602	chr6_mann_hap4	2354083	2354084	rs2844670	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MUC22	rs2844670-G	NR	2E-9		0.0247626	[0.017-0.033] unit increase	Affymetrix [323123] (imputed)	N
602	chr6_mann_hap4	2355212	2355213	rs2844665	21801394	Genin E	2011-07-29	Orphanet J Rare Dis	Genome-wide association study of Stevens-Johnson Syndrome and Toxic Epidermal Necrolysis in Europe.	Drug-induced Stevens-Johnson syndrome or toxic epidermal necrolysis (SJS/TEN)	424 European ancestry cases, 1,881 European ancestry controls	NA	6p21.33	C6orf205	rs2844665-C	0.62	3E-7		1.54	[1.30-1.82]	Illumina [268914]	N
602	chr6_mann_hap4	2355351	2355352	rs9262558	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Osteoporosis	8,520 European ancestry cases, 479,981 European ancestry controls, 9,794 East Asian ancestry cases, 168,932 East Asian ancestry controls	NA	6p21.33		rs9262558-T	NR	3E-8		0.1429	[0.092-0.194] unit decrease	Affymetrix, Illumina [25844994] (imputed)	N
602	chr6_mann_hap4	2355481	2355482	rs115730672	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Treatment or medication use - insulin product (UKB data field 20003_1140883066)	4,469 European ancestry cases, 451,807 European ancestry controls	NA	6p21.33		rs115730672-C	0.005712	3E-11		1.05	[0.74-1.36] unit increase	NR [11842647] (imputed)	N
602	chr6_mann_hap4	2358404	2358405	rs150180633	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p21.33	NR	rs150180633-?	NR	4E-14		0.3518	[0.26-0.44] unit increase	Illumina [at least 560000] (imputed)	N
602	chr6_mann_hap4	2358542	2358543	rs116353863	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	6p21.33	MHC	rs116353863-C	0.0165	9E-9		1.2	[1.13-1.27]	Affymetrix, Illumina [16900397] (imputed)	N
603	chr6_mann_hap4	2360264	2360264	rs770655224	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.33	MUC22	rs770655224-G	0.8871	4E-7		0.0673	[0.041-0.093] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
603	chr6_mann_hap4	2360283	2360284	rs12528596	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	6p21.33	Intergenic	rs12528596-T	NR	1E-7		0.0242361	[0.015-0.033] unit decrease	Illumina [13519193] (imputed)	N
603	chr6_mann_hap4	2360537	2360538	rs10456389	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MUC22	rs10456389-T	NR	2E-9		0.0238148	[0.016-0.032] unit decrease	Affymetrix [321016] (imputed)	N
603	chr6_mann_hap4	2361708	2361709	rs17190106	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)(bidirectional)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.33		rs17190106-G	NR	2E-10				Affymetrix [7846216] (imputed)	N
603	chr6_mann_hap4	2364543	2364544	rs73727186	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	6p21.33	HCG22, MUC22, MUC21, C6orf15, PSORS1C1, CDSN, PSORS1C2, CCHCR1, DPCR1, TCF19, POU5F1, SFTA2, VARS2, PSORS1C3, GTF2H4, DDR1, HCG27, MIR4640	rs73727186-?		6E-6	(heterogeneous)	0.235	[0.13-0.34] unit increase	Illumina [1492601] (imputed)	N
603	chr6_mann_hap4	2364543	2364544	rs73727186	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	6p21.33	HCG22, MUC22, MUC21, C6orf15, PSORS1C1, CDSN, PSORS1C2, CCHCR1, DPCR1, TCF19, POU5F1, SFTA2, VARS2, PSORS1C3, GTF2H4, DDR1, HCG27, MIR4640	rs73727186-?		5E-6	(dominant)	0.233	[-0.43732-0.90332] unit increase	Illumina [1492601] (imputed)	N
603	chr6_mann_hap4	2365335	2365336	rs2251830	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	6p21.33	HCG22	rs2251830-A	0.36	5E-22		0.053	[0.041-0.065] unit increase	Affymetrix, Illumina [2704730] (imputed)	N
603	chr6_mann_hap4	2366765	2366766	rs2517532	22493691	Eriksson N	2012-04-06	PLoS One	Novel associations for hypothyroidism include known autoimmune risk loci.	Hypothyroidism	3,736 European ancestry cases, 35,546 European ancestry controls	NA	6p21.33	HLA-C, LOC729792, HCG22, C6orf15, DHFRP2, HCP5, HLA-B	rs2517532-G	0.597	1E-8		1.16	[1.10-1.22]	Illumina [870065]	N
603	chr6_mann_hap4	2366904	2366905	rs2523864	25813999	Jeong S	2015-04-01	Invest Ophthalmol Vis Sci	Identification of a Novel Mucin Gene HCG22 Associated With Steroid-Induced Ocular Hypertension.	Change in intraocular pressure in response to steroid treatment (triamcinolone acetonide)	64 European ancestry individuals	49 European ancestry individuals	6p21.33	HCG22, HLA-A, HLA-B, MUC22	rs2523864-T	0.412	5E-9				Illumina [1545328]	N
603	chr6_mann_hap4	2368629	2368630	rs9262602	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p21.33	NR	rs9262602-G	0.132	2E-8	(IFNAR2_of_CD20p)			Illumina [5084123] (imputed)	N
603	chr6_mann_hap4	2368886	2368887	rs77203474	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Antisaccade task score	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	6p21.33	HCG22	rs77203474-A	NR	3E-6		0.1378235	[0.079-0.197] unit decrease	Illumina [> 6200000] (imputed)	N
603	chr6_mann_hap4	2369287	2369288	rs4713428	26584805	Dorajoo R	2015-11-19	Genes Nutr	A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.	Plasma omega-3 polyunsaturated fatty acid level (eicosapentaenoic acid)	717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls	NA	6p21.33	NR	rs4713428-G	0.294	7E-6		0.0854	[0.048-0.123] unit decrease	Illumina [up to 1980188] (imputed)	N
603	chr6_mann_hap4	2370512	2370513	rs2523855	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCG22	rs2523855-C	NR	2E-10		0.0207136	[0.014-0.027] unit decrease	Affymetrix [323123] (imputed)	N
603	chr6_mann_hap4	2371182	2371183	rs2905757	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCG22	rs2905757-T	NR	5E-12		0.0207441	[0.015-0.027] unit increase	Affymetrix [319769] (imputed)	N
603	chr6_mann_hap4	2371182	2371183	rs2905757	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HCG22	rs2905757-T	NR	3E-11		0.0199898	[0.014-0.026] unit increase	Affymetrix [319769] (imputed)	N
603	chr6_mann_hap4	2371182	2371183	rs2905757	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCG22	rs2905757-T	NR	3E-8		0.0166947	[0.011-0.023] unit decrease	Affymetrix [321016] (imputed)	N
603	chr6_mann_hap4	2372951	2372952	rs9262631	26151496	Chen PL	2015-07-07	Nat Commun	Genetic determinants of antithyroid drug-induced agranulocytosis by human leukocyte antigen genotyping and genome-wide association study.	Thionamide-induced agranulocytosis in Graves' disease	21 East Asian ancestry cases with agranulocytosis, 662 East Asian ancestry cases without agranulocytosis	21 East Asian ancestry cases with agranulocytosis, 546 East Asian ancestry cases without agranulocytosis	6p21.33	HLA	rs9262631-A	0.063	6E-19	(trend)	7.09	[4.32-11.63] (allelic)	Affymetrix [522980]	N
603	chr6_mann_hap4	2373158	2373159	rs9262632	21051598	Pereyra F	2010-11-04	Science	The major genetic determinants of HIV-1 control affect HLA class I peptide presentation.	HIV-1 control	516 European cases, 1,196 European controls, 341 African American cases, 892 African American controls, 117 Hispanic cases, 560 Hispanic controls	NA	6p21.33	intergenic	rs9262632-G	0.10	1E-8	(AA)	3.1	[NR]	Illumina [1384048] (imputed)	N
603	chr6_mann_hap4	2374586	2374587	rs76541615	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	6p21.33	MHC-region	rs76541615-T	0.796	1E-17		1.08	[1.06-1.09]	Affymetrix, Illumina [11800000] (imputed)	N
603	chr6_mann_hap4	2375685	2375686	rs2517521	32589924	Bi W	2020-06-23	Am J Hum Genet	A Fast and Accurate Method for Genome-Wide Time-to-Event Data Analysis and Its Application to UK Biobank.	Hyperlipidemia (time to event)	35,623 British ancestry cases, 247,248 British ancestry controls	NA	6p21.33	HCG22	rs2517521-?	NR	3E-8				NR [~ 24000000] (imputed)	N
603	chr6_mann_hap4	2375685	2375686	rs2517521	32589924	Bi W	2020-06-23	Am J Hum Genet	A Fast and Accurate Method for Genome-Wide Time-to-Event Data Analysis and Its Application to UK Biobank.	Essential hypertension (time to event)	76,566 British ancestry cases, 206,305 British ancestry controls	NA	6p21.33	HCG2248	rs2517521-?	NR	4E-8				NR [~ 24000000] (imputed)	N
603	chr6_mann_hap4	2375918	2375919	rs78725346	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.33	NR	rs78725346-A	0.01045	3E-8	(CKB)	0.03173	NR unit increase	Illumina [1671387] (imputed)	N
603	chr6_mann_hap4	2377631	2377632	rs2523842	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCG22	rs2523842-A	NR	2E-9		0.0493584	[0.033-0.066] unit decrease	Affymetrix [321016] (imputed)	N
603	chr6_mann_hap4	2377804	2377805	rs9262651	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HCG22	rs9262651-T	NR	3E-11		0.0220473	[0.016-0.029] unit increase	Affymetrix [321169] (imputed)	N
603	chr6_mann_hap4	2378471	2378472	rs2517510	21738480	Nalls MA	2011-07-01	PLoS Genet	Multiple loci are associated with white blood cell phenotypes.	White blood cell count	19,509 European ancestry individuals	11,823 European ancestry individuals	6p21.33	PSORS1C1, MUC21, HCG22, C6orf15, CCHCR1, CDSN, PSORS1C2	rs2517510-T		4E-13	(WBC)	0.0129	[0.0094-0.0164] unit decrease	Affymetrix, Illumina [> 2400000] (imputed)	N
603	chr6_mann_hap4	2381992	2381993	rs149917912	33841421	Li J	2021-03-25	Front Immunol	Variants at the MHC Region Associate With Susceptibility to <i>Clostridioides difficile</i> Infection: A Genome-Wide Association Study Using Comprehensive Electronic Health Records.	Clostridioides difficle infection	1,160 European ancestry cases, 14,144 European ancestry controls	NA	6p21.33	NR	rs149917912-C	0.0242	5E-6		1.67	[1.37-2]	Illumina [64973696] (imputed)	N
603	chr6_mann_hap4	2382680	2382681	rs75056122	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.33	NR	rs75056122-T	0.01045	3E-8	(CKB)	0.03173	NR unit increase	Illumina [1671387] (imputed)	N
603	chr6_mann_hap4	2382944	2382945	rs3094089	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCG22	rs3094089-C	NR	1E-9		0.021023	[0.014-0.028] unit decrease	Affymetrix [323858] (imputed)	N
603	chr6_mann_hap4	2382944	2382945	rs3094089	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HCG22	rs3094089-C	NR	7E-9		0.0200851	[0.013-0.027] unit decrease	Affymetrix [127266] (imputed)	N
603	chr6_mann_hap4	2383540	2383541	rs3132567	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HCG22	rs3132567-T	NR	3E-8		0.0202317	[0.013-0.027] unit decrease	Affymetrix [319769] (imputed)	N
603	chr6_mann_hap4	2383901	2383902	rs192064582	32141793	Garman L	2020-03-06	Ocul Immunol Inflamm	Genome-Wide Association Study of Ocular Sarcoidosis Confirms HLA Associations and Implicates Barrier Function and Autoimmunity in African Americans.	Ocular sarcoidosis	260 African American cases, 1,551 African American controls	NA	6p21.33	NR	rs192064582-T	NR	8E-6		1.747	[1.37-2.23]	Illumina [13976150] (imputed)	N
603	chr6_mann_hap4	2383921	2383922	rs184099286	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	QRS duration	3,274 African American individuals, 13,420 Hispanic/Latino individuals, 126 Asian ancestry individuals, 226 Native American ancestry individuals	NA	6p21.33	HCG22	rs184099286-?	NR	5E-9	(Hispanic/Latino)	1.17582	[0.78-1.57] unit decrease	Illumina [26566045] (imputed)	N
603	chr6_mann_hap4	2389001	2389001	rs145214406	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.33	NR	rs145214406-CAA	0.012	1E-12		0.593265	[0.43-0.76] unit increase	Affymetrix [up to 8900000] (imputed)	N
603	chr6_mann_hap4	2392276	2392277	rs2517481	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Growth differentiation factor-15 levels	21,758 European ancestry individuals	9,173 individuals	6p21.33		rs2517481-C	0.41	3E-9		0.0481	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
603	chr6_mann_hap4	2394839	2394840	rs2517474	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small LDL	115,082 European ancestry individuals	NA	6p21.33		rs2517474-G	0.542926	2E-8		0.023198	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
603	chr6_mann_hap4	2394839	2394840	rs2517474	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium LDL	115,082 European ancestry individuals	NA	6p21.33		rs2517474-G	0.542926	1E-9		0.0250618	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
603	chr6_mann_hap4	2394839	2394840	rs2517474	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium LDL	115,082 European ancestry individuals	NA	6p21.33		rs2517474-G	0.542926	7E-9		0.0240182	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
603	chr6_mann_hap4	2394839	2394840	rs2517474	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small LDL	115,082 European ancestry individuals	NA	6p21.33		rs2517474-G	0.542926	3E-8		0.0228734	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
603	chr6_mann_hap4	2394839	2394840	rs2517474	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	6p21.33		rs2517474-G	0.542926	2E-9		0.0247017	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
603	chr6_mann_hap4	2394839	2394840	rs2517474	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	RNU6-1133P	rs2517474-A	NR	8E-10		0.0173534	[0.012-0.023] unit increase	Affymetrix [319769] (imputed)	N
603	chr6_mann_hap4	2394839	2394840	rs2517474	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	RNU6-1133P	rs2517474-A	NR	9E-9		0.0162462	[0.011-0.022] unit increase	Affymetrix [319769] (imputed)	N
603	chr6_mann_hap4	2394839	2394840	rs2517474	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	RNU6-1133P	rs2517474-A	NR	7E-9		0.0163369	[0.011-0.022] unit decrease	Affymetrix [321016] (imputed)	N
603	chr6_mann_hap4	2394839	2394840	rs2517474	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	RNU6-1133P	rs2517474-A	NR	3E-9		0.0169233	[0.011-0.023] unit increase	Affymetrix [321169] (imputed)	N
603	chr6_mann_hap4	2396560	2396561	rs373537558	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	6p21.33	RNU6-1133P	rs373537558-A	0.9873	1E-12		0.0855	[0.062-0.109] unit increase	Affymetrix [18391927] (imputed)	N
603	chr6_mann_hap4	2398693	2398694	rs9263475	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4 on CD39+ secreting CD4 regulatory T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs9263475-G	0.51353	1E-12		0.2076	[0.15-0.26] unit increase	Illumina [17954496] (imputed)	N
603	chr6_mann_hap4	2398693	2398694	rs9263475	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.33	Intergenic	rs9263475-G	NR	6E-9	(women)	0.0308596	[0.02-0.041] unit decrease	Illumina [13520550] (imputed)	N
603	chr6_mann_hap4	2398693	2398694	rs9263475	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.33	Intergenic	rs9263475-G	NR	2E-9		0.0221293	[0.015-0.029] unit decrease	Illumina [13520550] (imputed)	N
603	chr6_mann_hap4	2400977	2400978	rs28732092	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p21.33	NR	rs28732092-T	0.0787	5E-7		0.011	[0.0067-0.0153] unit increase	NR [7666894] (imputed)	N
603	chr6_mann_hap4	2402086	2402087	rs2535307	28132517	Xie W	2017-01-28	AIDS Res Hum Retroviruses	Genome-Wide Analyses Reveal Gene Influence on HIV Disease Progression and HIV-1C Acquisition in Southern Africa.	HIV progression (CD4 and viral load)	556 Motswana ancestry cases	NA	6p21.33	HCG22	rs2535307-C	0.48	4E-7				Illumina [NR]	N
603	chr6_mann_hap4	2402726	2402727	rs2535305	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	RNU6-1133P	rs2535305-G	NR	8E-10		0.0178493	[0.012-0.024] unit increase	Affymetrix [321169] (imputed)	N
603	chr6_mann_hap4	2403363	2403364	rs12527394	29534301	Nishida N	2018-03-13	Hepatology	Key HLA-DRB1-DQB1 haplotypes and role of the BTNL2 gene for response to a hepatitis B vaccine.	Response to hepatitis B vaccine	107 Japanese ancestry low responder individuals, 351 Japanese ancestry intermediate responder individuals, 735 Japanese ancestry high responder individuals	NA	6p21.33	C6orf15	rs12527394-?		5E-8		0.174	unit decrease	Affymetrix [427664]	N
603	chr6_mann_hap4	2406520	2406521	rs4947296	31050781	Zhao SX	2019-05-03	JAMA Netw Open	Assessment of Molecular Subtypes in Thyrotoxic Periodic Paralysis and Graves Disease Among Chinese Han Adults: A Population-Based Genome-Wide Association Study.	Thyrotoxic hypokalemic periodic paralysis and Graves disease	171 Han Chinese ancestry cases, 2,160 Han Chinese ancestry controls	362 Han Chinese ancestry cases, 1,089 Han Chinese ancestry controls	6p21.33	C6orf15	rs4947296-?	0.14	3E-22		2.06	[1.77-2.39]	Illumina [2752055] (imputed)	N
603	chr6_mann_hap4	2406520	2406521	rs4947296	23001997	Hou S	2012-12-06	Arthritis Rheum	Identification of a susceptibility locus in STAT4 for Behcet's disease in Han Chinese in a genome-wide association study.	Behcet's disease	147 Han Chinese ancestry cases, 951 Han Chinese ancestry controls	554 Han Chinese ancestry cases, 1,159 Han Chinese ancestry controls	6p21.33	HCG22	rs4947296-?	NR	1E-11		2.57	[1.96-3.37]	Affymetrix [661736]	N
603	chr6_mann_hap4	2406520	2406521	rs4947296	21841780	Chu X	2011-08-14	Nat Genet	A genome-wide association study identifies two new risk loci for Graves' disease.	Graves' disease	1,468 Chinese ancestry cases, 1,490 Chinese ancestry controls	3,994 Chinese ancestry cases, 3,510 Chinese ancestry controls	6p21.33	MUC21, C6orf15	rs4947296-C	0.14	4E-51		1.77	[1.65-1.91]	Illumina [486049]	N
603	chr6_mann_hap4	2406682	2406683	rs3130544	23263863	Li J	2012-12-20	Hum Mol Genet	GWAS of blood cell traits identifies novel associated loci and epistatic interactions in Caucasian and African-American children.	Hematology traits	7,943 African American children, 6,234 European ancestry children	NA	6p21.33	PSORS1C1, MUC21, HCG22, C6orf15, CCHCR1, CDSN, PSORS1C2	rs3130544-A	NR	5E-7	(WBC)	0.0189	[0.011-0.026] unit decrease	Illumina [544917]	N
603	chr6_mann_hap4	2406682	2406683	rs3130544	23055271	Gregersen PK	2012-07-16	Ann Neurol	Risk for myasthenia gravis maps to a (151) Pro->Ala change in TNIP1 and to human leukocyte antigen-B*08.	Myasthenia gravis	400 European ancestry cases, 5,505 European ancestry controls	249 European ancestry cases, 3,415 European ancestry controls	6p21.33	NR	rs3130544-A	0.13	2E-90		5.64	[4.77-6.67]	Illumina [274256]	N
603	chr6_mann_hap4	2406682	2406683	rs3130544	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.33	intergenic	rs3130544-A	0.1238	9E-58		3.34	[NR]	Illumina [242824]	N
603	chr6_mann_hap4	2407804	2407805	rs2535298	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p21.33	NR	rs2535298-?	NR	1E-6		0.0761	[0.046-0.107] unit increase	Illumina [at least 560000] (imputed)	N
603	chr6_mann_hap4	2408561	2408562	rs2535296	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p21.33	NR	rs2535296-?	NR	3E-12		0.0858	[0.062-0.11] unit decrease	Illumina [at least 560000] (imputed)	N
603	chr6_mann_hap4	2409903	2409904	rs3094087	33227023	Wang Y	2020-11-23	PLoS Genet	Genome-wide association study identifies 16 genomic regions associated with circulating cytokines at birth.	IgA levels	8,318 European ancestry individuals	NA	6p21.33	HLA	rs3094087-T	0.15	2E-10		0.1	[0.080-0.120] unit increase	Illumina [~ 9000000] (imputed)	N
603	chr6_mann_hap4	2411755	2411756	rs3130967	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	RNU6-1133P	rs3130967-T	NR	2E-9		0.0334393	[0.023-0.044] unit increase	Affymetrix [323123] (imputed)	N
603	chr6_mann_hap4	2413379	2413380	rs146508039	33841421	Li J	2021-03-25	Front Immunol	Variants at the MHC Region Associate With Susceptibility to <i>Clostridioides difficile</i> Infection: A Genome-Wide Association Study Using Comprehensive Electronic Health Records.	Clostridioides difficle infection in antibiotics-users	587 European ancestry cases, 3,166 European ancestry controls	NA	6p21.33	NR	rs146508039-T	0.025	5E-7		2.24	[1.7-2.88]	Illumina [64973696] (imputed)	N
603	chr6_mann_hap4	2413413	2413414	rs3130968	34601942	van Zuydam NR	2021-10-04	Circ Genom Precis Med	Genome-Wide Association Study of Peripheral Artery Disease.	Peripheral artery disease	12,086 European ancestry cases, 449,548 European ancestry controls	31,307 cases, 211,753 controls, 3,164 East Asian ancestry cases, 20,134 East Asian ancestry controls	6p21.33		rs3130968-T	0.19	3E-12		1.07	[1.05-1.09]	Affymetrix, Illumina [NR] (imputed)	N
603	chr6_mann_hap4	2413413	2413414	rs3130968	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	C6orf15	rs3130968-T	NR	4E-9		0.0219861	[0.015-0.029] unit decrease	Affymetrix [319769] (imputed)	N
603	chr6_mann_hap4	2413413	2413414	rs3130968	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	C6orf15	rs3130968-T	NR	4E-8		0.0204516	[0.013-0.028] unit decrease	Affymetrix [319769] (imputed)	N
603	chr6_mann_hap4	2413413	2413414	rs3130968	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	C6orf15	rs3130968-T	NR	7E-9		0.0218317	[0.014-0.029] unit decrease	Affymetrix [321169] (imputed)	N
603	chr6_mann_hap4	2413413	2413414	rs3130968	31285632	Klarin D	2019-07-08	Nat Med	Genome-wide association study of peripheral artery disease in the Million Veteran Program.	Peripheral artery disease	24,009 European ancestry cases, 150,983 European ancestry controls, 5,373 African ancestry cases, 42,485 African ancestry controls, 1,925 Hispanic cases, 18,285 Hispanic controls	5,117 European ancestry cases, 389,291 European ancestry controls	6p21.33	HLA-B	rs3130968-T	0.1371	3E-10		1.07	[1.05-1.10]	Affymetrix [at least 20323458] (imputed)	N
603	chr6_mann_hap4	2413459	2413460	rs149396823	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	6p21.33		rs149396823-A	0.00992199999999999	1E-11		0.07646505	[0.054-0.099] unit increase	Affymetrix [93095623] (imputed)	N
603	chr6_mann_hap4	2414975	2414976	rs144846110	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p21.33	C6orf15	rs144846110-G	NR	1E-10		0.0272233	[0.019-0.036] unit decrease	Affymetrix [323858] (imputed)	N
603	chr6_mann_hap4	2415606	2415607	rs9263523	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Prostate cancer	11,599 European ancestry cases, 199,628 European ancestry controls, 5,672 East Asian ancestry cases, 84,660 East Asian ancestry controls	NA	6p21.33		rs9263523-T	NR	1E-10		0.0949	[0.066-0.124] unit decrease	Affymetrix, Illumina [25775424] (imputed)	N
603	chr6_mann_hap4	2415892	2415893	rs4371876	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4 on HLA DR+ CD4+ T cell	3,060 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs4371876-A	0.51058	2E-10		0.1831	[0.13-0.24] unit increase	Illumina [18012714] (imputed)	N
603	chr6_mann_hap4	2416335	2416335	rs200788140	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4 on activated CD4 regulatory T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs200788140-AT	0.35258	7E-11		0.2109	[0.15-0.27] unit increase	Illumina [17954496] (imputed)	N
603	chr6_mann_hap4	2416335	2416335	rs200788140	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4 on CD39+ activated CD4 regulatory T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs200788140-AT	0.35258	8E-15		0.2502	[0.19-0.31] unit increase	Illumina [17954496] (imputed)	N
603	chr6_mann_hap4	2417869	2417870	rs9263567	21844884	Wheeler HE	2011-08-16	Pharmacogenomics J	Genome-wide meta-analysis identifies variants associated with platinating agent susceptibility across populations.	Response to platinum-based chemotherapy (cisplatin)	176 Sub-Saharan African ancestry lymphoblastoid cell lines, 83 African ancestry lymphoblastoid cell lines, 175 East Asian ancestry lymphoblastoid cell lines, 174 European ancestry lymphoblastoid cell lines	NA	6p21.33	intergenic	rs9263567-?		5E-6				NR [~ 3000000] (imputed)	N
603	chr6_mann_hap4	2417869	2417870	rs9263567	21844884	Wheeler HE	2011-08-16	Pharmacogenomics J	Genome-wide meta-analysis identifies variants associated with platinating agent susceptibility across populations.	Response to platinum-based chemotherapy (carboplatin)	176 Sub-Saharan African ancestry lymphoblastoid cell lines, 83 African ancestry lymphoblastoid cell lines, 175 East Asian ancestry lymphoblastoid cell lines, 174 European ancestry lymphoblastoid cell lines	NA	6p21.33	intergenic	rs9263567-?		2E-6				NR [~ 3000000] (imputed)	N
603	chr6_mann_hap4	2421435	2421436	rs9263622	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.33		rs9263622-T	0.603	5E-29				Affymetrix [10369434] (imputed)	N
603	chr6_mann_hap4	2422375	2422376	rs6457327	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Prostate cancer	7,438 White British ancestry cases, 118,206 White British ancestry controls	NA	6p21.33		rs6457327-?	NR	5E-8		1.1003	[1.07-1.13]	NR [680312]	N
603	chr6_mann_hap4	2422375	2422376	rs6457327	20639881	Conde L	2010-07-18	Nat Genet	Genome-wide association study of follicular lymphoma identifies a risk locus at 6p21.32.	Follicular lymphoma	681 European ancestry cases, 750 European ancestry controls	up to 3,164 European ancestry cases, 6,208 European ancestry controls	6p21.33	C6orf15	rs6457327-C	0.56	7E-6	(FL)	1.47	[1.27-1.72]	Illumina [312768]	N
603	chr6_mann_hap4	2422375	2422376	rs6457327	19620980	Skibola CF	2009-07-20	Nat Genet	Genetic variants at 6p21.33 are associated with susceptibility to follicular lymphoma.	Follicular lymphoma	189 European ancestry cases, 592 European controls	456 European ancestry cases, 2,785 European ancestry controls	6p21.33	STG, PSORS1	rs6457327-C	0.62	5E-11		1.69	[1.43-2.00]	Illumina [~ 500000]	N
603	chr6_mann_hap4	2423947	2423950	rs141232332	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	C6orf15	rs141232332-G	0.439	2E-17	(Leukocyte immunoglobulin-like receptor subfamily B member 1, LILRB1.5090.49.2)	0.21	[0.17-0.25] unit increase	Affymetrix [10572788] (imputed)	N
603	chr6_mann_hap4	2425584	2425585	rs2517473	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	6p21.33	C6orf15	rs2517473-C	0.92125	2E-8		0.0215969	[0.014-0.029] unit decrease	Affymetrix [NR] (imputed)	N
603	chr6_mann_hap4	2426960	2426961	rs1265057	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p21.33	C6orf15	rs1265057-C	0.491	2E-6		0.053	[0.031-0.075] unit decrease	Affymetrix, Illumina [7374092] (imputed)	N
603	chr6_mann_hap4	2427154	2427155	rs3132556	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	6p21.33	NR	rs3132556-A	0.150099	4E-8		0.048321012	[0.031-0.066] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
603	chr6_mann_hap4	2427154	2427155	rs3132556	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	6p21.33	NR	rs3132556-T	0.184341545793891	8E-15		0.012361368	[0.0092-0.0155] unit decrease	NR [NR]	N
603	chr6_mann_hap4	2427154	2427155	rs3132556	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	6p21.33	NR	rs3132556-T	0.184341545793891	2E-14		0.015899843	[0.012-0.02] unit decrease	NR [NR]	N
603	chr6_mann_hap4	2427154	2427155	rs3132556	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	6p21.33	NR	rs3132556-T	0.184341545793891	9E-15		0.010477979	[0.0078-0.0131] unit decrease	NR [NR]	N
603	chr6_mann_hap4	2427154	2427155	rs3132556	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.33	ATP6V1G2, ATP6V1G2-DDX39B, C6orf15, CCHCR1, CDSN, DDR1, DDX39B, DPCR1, FLOT1, GTF2H4, HCG22, HCG26, HCG27, HCP5, HLA-B, HLA-C, IER3, LINC00243, LTA, MCCD1, MICA, MICB, MIR4640, MIR6891, MUC21, MUC22, NFKBIL1, POU5F1, PSORS1C1, PSORS1C2, PSORS1C3, SFTA2, SNORD117, SNORD84, TCF19, TNF, TUBB, VARS2	rs3132556-A		1E-9		1.08	[1.05-1.11]	Affymetrix, Illumina [NR]	N
603	chr6_mann_hap4	2427989	2427990	rs2233980	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	6p21.33	NR	rs2233980-A	0.130672432110858	1E-18		0.01198786	[0.0093-0.0147] unit decrease	NR [NR]	N
603	chr6_mann_hap4	2428361	2428362	rs2233974	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	C6orf15	rs2233974-G	NR	3E-9		0.020957	[0.014-0.028] unit increase	Affymetrix [321016] (imputed)	N
603	chr6_mann_hap4	2428361	2428362	rs2233974	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p21.33	C6orf15	rs2233974-C	0.377	8E-27				Illumina [118177]	N
603	chr6_mann_hap4	2429049	2429050	rs1265051	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	C6orf15	rs1265051-G	NR	2E-8		0.0200002	[0.013-0.027] unit increase	Affymetrix [319769] (imputed)	N
603	chr6_mann_hap4	2429049	2429050	rs1265051	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	C6orf15	rs1265051-G	NR	4E-8		0.0193546	[0.012-0.026] unit increase	Affymetrix [319769] (imputed)	N
603	chr6_mann_hap4	2429550	2429551	rs2233956	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	C6orf15	rs2233956-C	NR	9E-13		0.0241887	[0.018-0.031] unit decrease	Affymetrix [319769] (imputed)	N
603	chr6_mann_hap4	2429550	2429551	rs2233956	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	C6orf15	rs2233956-C	NR	3E-18		0.0327829	[0.025-0.04] unit decrease	Affymetrix [323858] (imputed)	N
603	chr6_mann_hap4	2429550	2429551	rs2233956	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	C6orf15	rs2233956-C	NR	8E-12		0.0231628	[0.017-0.03] unit decrease	Affymetrix [319769] (imputed)	N
603	chr6_mann_hap4	2429550	2429551	rs2233956	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	C6orf15	rs2233956-C	NR	2E-17		0.0319326	[0.025-0.039] unit decrease	Affymetrix [127266] (imputed)	N
603	chr6_mann_hap4	2429550	2429551	rs2233956	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	C6orf15	rs2233956-C	NR	9E-10		0.0207055	[0.014-0.027] unit increase	Affymetrix [321016] (imputed)	N
603	chr6_mann_hap4	2429550	2429551	rs2233956	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	C6orf15	rs2233956-C	NR	6E-9		0.0214605	[0.014-0.029] unit increase	Affymetrix [323123] (imputed)	N
603	chr6_mann_hap4	2429550	2429551	rs2233956	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	C6orf15	rs2233956-C	NR	3E-9		0.0203515	[0.014-0.027] unit decrease	Affymetrix [321169] (imputed)	N
603	chr6_mann_hap4	2429550	2429551	rs2233956	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in ever smokers	23,223 European ancestry cases,  16,964 European ancestry controls	NA	6p21.33	C6orf15	rs2233956-C	0.167124691	5E-16		1.1730286	[1.128692308-1.219106364]	Illumina [10439017] (imputed)	N
603	chr6_mann_hap4	2429550	2429551	rs2233956	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.33	intergenic	rs2233956-G	0.1813	6E-48		2.77	[NR]	Illumina [242824]	N
603	chr6_mann_hap4	2429596	2429597	rs2233955	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	C6orf15	rs2233955-A	NR	1E-9		0.0215169	[0.015-0.028] unit increase	Affymetrix [319769] (imputed)	N
603	chr6_mann_hap4	2429596	2429597	rs2233955	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	C6orf15	rs2233955-A	NR	4E-9		0.0208588	[0.014-0.028] unit increase	Affymetrix [319769] (imputed)	N
603	chr6_mann_hap4	2429754	2429755	rs1265048	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	C6orf15	rs1265048-C	NR	1E-8		0.0172428	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
603	chr6_mann_hap4	2429754	2429755	rs1265048	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	C6orf15	rs1265048-C	NR	2E-9		0.0182055	[0.012-0.024] unit decrease	Affymetrix [321016] (imputed)	N
603	chr6_mann_hap4	2429754	2429755	rs1265048	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	C6orf15	rs1265048-C	NR	4E-10		0.0206963	[0.014-0.027] unit decrease	Affymetrix [323123] (imputed)	N
603	chr6_mann_hap4	2429754	2429755	rs1265048	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	C6orf15	rs1265048-C	NR	4E-8		0.0167663	[0.011-0.023] unit increase	Affymetrix [321169] (imputed)	N
603	chr6_mann_hap4	2429754	2429755	rs1265048	32421744	Gzara C	2020-05-18	PLoS Pathog	Family-based genome-wide association study of leprosy in Vietnam.	Leprosy	1,749 Vietnamese ancestry cases	1,181 Vietnamese ancestry cases, 688 Vietnamese ancestry controls	6p21.33	C6orf15	rs1265048-T	0.51	6E-11		1.4492754	[1.25-1.72]	Illumina [5607170] (imputed)	N
603	chr6_mann_hap4	2429754	2429755	rs1265048	30013184	Waage J	2018-07-16	Nat Genet	Genome-wide association and HLA fine-mapping studies identify risk loci and genetic pathways underlying allergic rhinitis.	Allergic sensitization	8,040 European ancestry cases, 16,441 European ancestry controls	NA	6p21.33	C5orf15, PSORS1C1	rs1265048-T	0.64	1E-7		1.1235955	[1.08-1.18]	Affymetrix, Illumina [16531985] (imputed)	N
603	chr6_mann_hap4	2429779	2429780	rs3094222	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Waist-hip ratio and HDL-C (pairwise)	402,477 European ancestry individuals, 11,333 East Asian, South Asian, Hispanic and African American ancestry individuals	NA	6p21.33	C6orf15-PSORS1C1	rs3094222-A	0.9135	1E-11				Affymetrix, Illumina [2331072] (imputed)	N
603	chr6_mann_hap4	2429779	2429780	rs3094222	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	6p21.33	C6orf15, PSORS1C1	rs3094222-G	0.108346341	9E-17		1.1642892	[1.123294727-1.206779842]	Illumina [10439017] (imputed)	N
603	chr6_mann_hap4	2429809	2429810	rs1265047	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	Intergenic	rs1265047-G	0.3485915	2E-17	(EA, MHC class I polypeptide-related sequence A)	0.3847	[0.3-0.47] unit increase	Affymetrix [509946]	N
603	chr6_mann_hap4	2430296	2430297	rs3130976	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	PSORS1C1	rs3130976-C	NR	1E-8		0.0197052	[0.013-0.026] unit decrease	Affymetrix [323858] (imputed)	N
603	chr6_mann_hap4	2430296	2430297	rs3130976	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	PSORS1C1	rs3130976-C	NR	3E-8		0.0190506	[0.012-0.026] unit decrease	Affymetrix [127266] (imputed)	N
603	chr6_mann_hap4	2430296	2430297	rs3130976	32814899	Meyer HV	2020-08-19	Nature	Genetic and functional insights into the fractal structure of the heart.	Myocardial fractal dimension (slice 8)	18,096 European individuals		6p21.33	NR	rs3130976-C	0.28549	3E-8		0.064606	[0.042-0.087] unit increase	Affymetrix [14134301] (imputed)	N
603	chr6_mann_hap4	2430296	2430297	rs3130976	32814899	Meyer HV	2020-08-19	Nature	Genetic and functional insights into the fractal structure of the heart.	Myocardial fractal dimension (slice 7)	18,096 European individuals		6p21.33	NR	rs3130976-C	0.28549	4E-7		0.059143	[0.036-0.082] unit increase	Affymetrix [14134301] (imputed)	N
603	chr6_mann_hap4	2430296	2430297	rs3130976	32814899	Meyer HV	2020-08-19	Nature	Genetic and functional insights into the fractal structure of the heart.	Myocardial fractal dimension (slice 6)	18,096 European individuals		6p21.33	NR	rs3130976-C	0.28549	4E-8		0.064023	[0.041-0.087] unit increase	Affymetrix [14134301] (imputed)	N
603	chr6_mann_hap4	2430296	2430297	rs3130976	32814899	Meyer HV	2020-08-19	Nature	Genetic and functional insights into the fractal structure of the heart.	Myocardial fractal dimension (slice 5)	18,096 European individuals		6p21.33	NR	rs3130976-C	0.28549	1E-8		0.066545	[0.044-0.089] unit increase	Affymetrix [14134301] (imputed)	N
603	chr6_mann_hap4	2430296	2430297	rs3130976	32814899	Meyer HV	2020-08-19	Nature	Genetic and functional insights into the fractal structure of the heart.	Myocardial fractal dimension (slice 4)	18,096 European individuals		6p21.33	NR	rs3130976-C	0.28549	2E-6		0.055881	[0.033-0.079] unit increase	Affymetrix [14134301] (imputed)	N
603	chr6_mann_hap4	2430296	2430297	rs3130976	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	6p21.33	C6orf15, PSORS1C1	rs3130976-T	NR	5E-8		0.124739	[0.08-0.169] unit increase	Illumina [at least 950000] (imputed)	N
603	chr6_mann_hap4	2430553	2430554	rs3130979	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	6p21.33		rs3130979-G	0.655198	1E-8		0.0238702	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
603	chr6_mann_hap4	2430760	2430761	rs3130980	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PSORS1C1	rs3130980-T	NR	1E-8		0.0171125	[0.011-0.023] unit decrease	Affymetrix [321016] (imputed)	N
603	chr6_mann_hap4	2430760	2430761	rs3130980	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	PSORS1C1	rs3130980-T	NR	2E-9		0.01962	[0.013-0.026] unit decrease	Affymetrix [323123] (imputed)	N
603	chr6_mann_hap4	2431642	2431643	rs3094219	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PSORS1C1, CDSN	rs3094219-A	NR	1E-8		0.0159832	[0.01-0.022] unit decrease	Affymetrix [321016] (imputed)	N
603	chr6_mann_hap4	2433296	2433299	rs34182778	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p21.33	CDSN	rs34182778-G		5E-44		0.035	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
603	chr6_mann_hap4	2433735	2433736	rs3094214	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	PSORS1C1, CDSN	rs3094214-A	NR	8E-11		0.0199471	[0.014-0.026] unit decrease	Affymetrix [323123] (imputed)	N
603	chr6_mann_hap4	2434123	2434124	rs3094212	20139978	Kamatani Y	2010-02-07	Nat Genet	Genome-wide association study of hematological and biochemical traits in a Japanese population.	White blood cell count	14,677 Japanese ancestry individuals	NA	6p21.33	PSORS1C1, CDSN	rs3094212-C	0.35	7E-9		0.07	[0.046-0.094] unit increase	Illumina [561583]	N
603	chr6_mann_hap4	2434177	2434178	rs3819686	29534301	Nishida N	2018-03-13	Hepatology	Key HLA-DRB1-DQB1 haplotypes and role of the BTNL2 gene for response to a hepatitis B vaccine.	Response to hepatitis B vaccine	107 Japanese ancestry low responder individuals, 351 Japanese ancestry intermediate responder individuals, 735 Japanese ancestry high responder individuals	NA	6p21.33	PSORS1C1	rs3819686-?		7E-6		0.15	unit decrease	Affymetrix [427664]	N
603	chr6_mann_hap4	2434777	2434778	rs78479381	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.33		rs78479381-T	0.109186	3E-20		1.0718842	[1.05-1.09]	Affymetrix, Illumina [9851866] (imputed)	N
603	chr6_mann_hap4	2435707	2435708	rs3130991	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	C6orf15, PSORS1C1, CDSN	rs3130991-T	0.3442211	4E-15	(EA, MHC class I polypeptide-related sequence B)	0.3612	[0.27-0.45] unit increase	Affymetrix [509946]	N
603	chr6_mann_hap4	2436497	2436498	rs3095318	27611488	Almoguera B	2016-09-09	Am J Respir Crit Care Med	Identification of Four Novel Loci in Asthma in European American and African American Populations.	Adult asthma	337 African American allergic asthma cases, 321 African American non-allergic asthma cases, 1,367 African American controls, 466 European American allergic asthma cases, 626 European American non-allergic asthma cases, 7,878 European American controls	NA	6p21.33	PSORS1C1	rs3095318-?	NR	7E-8	(EA)			Affymetrix, Illumina [NR] (imputed)	N
603	chr6_mann_hap4	2436497	2436498	rs3095318	27611488	Almoguera B	2016-09-09	Am J Respir Crit Care Med	Identification of Four Novel Loci in Asthma in European American and African American Populations.	Adult asthma	337 African American allergic asthma cases, 321 African American non-allergic asthma cases, 1,367 African American controls, 466 European American allergic asthma cases, 626 European American non-allergic asthma cases, 7,878 European American controls	NA	6p21.33	PSORS1C1	rs3095318-?	NR	2E-11		0.351	[0.25-0.45] unit increase	Affymetrix, Illumina [NR] (imputed)	N
603	chr6_mann_hap4	2436584	2436585	rs2302398	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	152,447 East Asian ancestry individuals	NA	6p21.33		rs2302398-G	0.773065	4E-13		0.026479	[0.019-0.034] unit decrease	Illumina [13478948] (imputed)	N
603	chr6_mann_hap4	2436584	2436585	rs2302398	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	153,015 East Asian ancestry individuals	NA	6p21.33		rs2302398-G	0.773485	9E-11		0.0240481	[0.017-0.031] unit decrease	Illumina [13478961] (imputed)	N
603	chr6_mann_hap4	2437335	2437336	rs6927322	26503584	Litchfield K	2015-10-27	Nat Commun	Identification of four new susceptibility loci for testicular germ cell tumour.	Testicular germ cell tumor	986 European ancestry cases, 4,946 European ancestry controls	4,009 cases, 4,066 controls	6p21.33	NR	rs6927322-T	0.04	6E-6		1.24	[1.08-1.43]	Illumina [~ 8900000] (imputed)	N
603	chr6_mann_hap4	2438062	2438063	rs4410768	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p21.33	CDSN, PSORS1C1	rs4410768-G	0.03	2E-10	(Turkish)	3.52	[2.34-5.30]	Illumina [up to 547389]	N
603	chr6_mann_hap4	2440320	2440321	rs9263688	26151496	Chen PL	2015-07-07	Nat Commun	Genetic determinants of antithyroid drug-induced agranulocytosis by human leukocyte antigen genotyping and genome-wide association study.	Thionamide-induced agranulocytosis in Graves' disease	21 East Asian ancestry cases with agranulocytosis, 662 East Asian ancestry cases without agranulocytosis	21 East Asian ancestry cases with agranulocytosis, 546 East Asian ancestry cases without agranulocytosis	6p21.33	HLA	rs9263688-G	0.053	5E-21	(trend)	8.06	[4.86-13.37] (allelic)	Affymetrix [522980]	N
603	chr6_mann_hap4	2440345	2440346	rs3094204	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PSORS1C1	rs3094204-A	NR	2E-9		0.0169554	[0.011-0.022] unit decrease	Affymetrix [319769] (imputed)	N
603	chr6_mann_hap4	2440345	2440346	rs3094204	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	PSORS1C1	rs3094204-A	NR	6E-9		0.0163675	[0.011-0.022] unit decrease	Affymetrix [319769] (imputed)	N
603	chr6_mann_hap4	2440345	2440346	rs3094204	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	PSORS1C1	rs3094204-A	NR	3E-8		0.0157756	[0.01-0.021] unit decrease	Affymetrix [321169] (imputed)	N
603	chr6_mann_hap4	2440402	2440403	rs3095307	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	PSORS1C1	rs3095307-C	NR	3E-9		0.0181221	[0.012-0.024] unit decrease	Affymetrix [323123] (imputed)	N
603	chr6_mann_hap4	2441121	2441122	rs3095304	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PSORS1C1	rs3095304-T	NR	8E-9		0.0205624	[0.014-0.028] unit decrease	Affymetrix [319769] (imputed)	N
603	chr6_mann_hap4	2441447	2441448	rs9263692	32492067	Ruffieux H	2020-06-03	PLoS Comput Biol	A fully joint Bayesian quantitative trait locus mapping of human protein abundance in plasma.	Protein quantitative trait loci	394 European ancestry individuals	548 European ancestry individuals	6p21.33	NR	rs9263692-?	NR	5E-7	(MICA)			Illumina [~ 4000000] (imputed)	N
603	chr6_mann_hap4	2441941	2441942	rs3815087	21801394	Genin E	2011-07-29	Orphanet J Rare Dis	Genome-wide association study of Stevens-Johnson Syndrome and Toxic Epidermal Necrolysis in Europe.	Drug-induced Stevens-Johnson syndrome or toxic epidermal necrolysis (SJS/TEN)	424 European ancestry cases, 1,881 European ancestry controls	NA	6p21.33	PSORS1C1	rs3815087-A	0.21	3E-7		1.53	[1.29-1.80]	Illumina [268914]	N
603	chr6_mann_hap4	2441941	2441942	rs3815087	20041166	Fellay J	2009-12-24	PLoS Genet	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	6p21.33	CDSN	rs3815087-?	NR	8E-8	(progression)			Illumina [NR]	N
603	chr6_mann_hap4	2442301	2442302	rs3094196	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	PSORS1C1	rs3094196-G	NR	9E-10		0.0228214	[0.016-0.03] unit decrease	Affymetrix [323123] (imputed)	N
603	chr6_mann_hap4	2442553	2442554	rs13209303	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6p21.33	PSORS1C2	rs13209303-?	NR	7E-6	(TAG 52:6)	0.4081859	[0.23-0.59] unit increase	Affymetrix [at least 2500000] (imputed)	N
603	chr6_mann_hap4	2443357	2443358	rs6931921	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Strep throat	52,487 European ancestry cases, 22,017 European ancestry controls	NA	6p21.33	NR	rs6931921-?	NR	5E-7		0.045	[0.027-0.063] unit decrease	Illumina [at least 560000] (imputed)	N
603	chr6_mann_hap4	2443648	2443649	rs3131004	34075027	Gonda X	2021-06-01	Transl Psychiatry	Genetic underpinnings of affective temperaments: a pilot GWAS investigation identifies a new genome-wide significant SNP for anxious temperament in ADGRB3 gene.	Hyperthymic temperament	775 European ancestry individuals	NA	6p21.33		rs3131004-G	NR	9E-7		0.04087	unit decrease	Illumina [2550710] (imputed)	N
603	chr6_mann_hap4	2444167	2444168	rs9263715	32771030	Tangtanatakul P	2020-08-08	Arthritis Res Ther	Meta-analysis of genome-wide association study identifies FBN2 as a novel locus associated with systemic lupus erythematosus in Thai population.	Systemic lupus erythematosus	487 Thai cases, 1,606 Thai controls	405 Thai cases, 1,590 Thai controls	6p21.33	PSORS1C1	rs9263715-A	0.32	2E-9		1.4329	[NR]	Illumina [421909] (imputed)	N
603	chr6_mann_hap4	2445391	2445392	rs74375290	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Epithelial ovarian cancer	1,112 White British ancestry cases, 147,944 White British ancestry controls	NA	6p21.33		rs74375290-?	NR	6E-6		2.32386	[1.96-2.69]	NR [666300]	N
603	chr6_mann_hap4	2445667	2445668	rs3130559	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PSORS1C1	rs3130559-T	NR	2E-8		0.0192616	[0.013-0.026] unit increase	Affymetrix [319769] (imputed)	N
603	chr6_mann_hap4	2445667	2445668	rs3130559	23144326	Kim DK	2012-11-09	Am J Respir Crit Care Med	Genome-wide association analysis of blood biomarkers in chronic obstructive pulmonary disease.	Chronic obstructive pulmonary disease-related biomarkers	Up to 1,951 European ancestry smokers	NA	6p21.33	PSORS1C1	rs3130559-T	0.2	8E-9	(SP-D)			Illumina [588352]	N
603	chr6_mann_hap4	2446180	2446181	rs6906565	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	6p21.33	NR	rs6906565-T	0.0994448200117359	2E-12		0.01719559	[0.012-0.022] unit increase	NR [NR]	N
603	chr6_mann_hap4	2446180	2446181	rs6906565	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	6p21.33	NR	rs6906565-T	0.0994448200117359	2E-12		0.011002761	[0.0079-0.0141] unit increase	NR [NR]	N
603	chr6_mann_hap4	2446500	2446501	rs3131006	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mononucleosis	17,457 European ancestry cases, 68,446 European ancestry controls	NA	6p21.33	NR	rs3131006-?	NR	3E-6		0.0727	[0.042-0.103] unit decrease	Illumina [at least 560000] (imputed)	N
603	chr6_mann_hap4	2447099	2447100	rs3132541	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental longevity (mother's age at death)	52,776 middle-aged British individuals	NA	6p21.33	NR	rs3132541-?	NR	5E-6		0.032324	[0.018-0.046] unit increase	Affymetrix [9658292] (imputed)	N
603	chr6_mann_hap4	2447604	2447605	rs143933372	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Creatinine levels	142,097 Japanese ancestry individuals	NA	6p21.33	PSORS1C1	rs143933372-?	NR	2E-8		0.03607	[0.024-0.049] unit decrease novel	Illumina [6108953] (imputed)	N
603	chr6_mann_hap4	2447943	2447944	rs4959053	23001997	Hou S	2012-12-06	Arthritis Rheum	Identification of a susceptibility locus in STAT4 for Behcet's disease in Han Chinese in a genome-wide association study.	Behcet's disease	147 Han Chinese ancestry cases, 951 Han Chinese ancestry controls	554 Han Chinese ancestry cases, 1,159 Han Chinese ancestry controls	6p21.33	PSORS1C1	rs4959053-?	.11	2E-20		4.38	[3.20-5.99]	Affymetrix [661736]	N
603	chr6_mann_hap4	2448992	2448992	rs548139121	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	PSORS1C1	rs548139121-TAA	NR	4E-8		0.0196747	[0.013-0.027] unit increase	Affymetrix [323123] (imputed)	N
603	chr6_mann_hap4	2449308	2449309	rs3823418	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals, at least 88,461 European ancestry individuals	NA	6p21.33	PSORS1C1	rs3823418-A	0.1032	2E-7	(Japanese)	0.0338	[0.021-0.047] unit decrease	Illumina [1986983] (imputed)	N
603	chr6_mann_hap4	2449308	2449309	rs3823418	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	6p21.33	PSORS1C1	rs3823418-A	0.15	2E-7		0.026	[0.0084-0.0436] unit increase	Affymetrix, Illumina [2704730] (imputed)	N
603	chr6_mann_hap4	2449792	2449793	rs3132569	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PSORS1C1	rs3132569-A	NR	2E-10		0.022581	[0.016-0.03] unit decrease	Affymetrix [321016] (imputed)	N
603	chr6_mann_hap4	2449949	2449950	rs4294047	33841421	Li J	2021-03-25	Front Immunol	Variants at the MHC Region Associate With Susceptibility to <i>Clostridioides difficile</i> Infection: A Genome-Wide Association Study Using Comprehensive Electronic Health Records.	Clostridioides difficle infection in antibiotics-users	587 European ancestry cases, 3,166 European ancestry controls	NA	6p21.33	PSORS1C2	rs4294047-A	0.103	8E-6		1.53	[1.28-1.8]	Illumina [64973696] (imputed)	N
603	chr6_mann_hap4	2450040	2450041	rs3130564	25827949	Kunz M	2015-05-04	Exp Dermatol	Genome-wide association study identifies new susceptibility loci for cutaneous lupus erythematosus.	Cutaneous lupus erythematosus	151 European ancestry cases, 1,288 European ancestry controls	219 European ancestry cases, 262 European ancestry controls	6p21.33	PSORS1C1	rs3130564-T	0.163	4E-10		2.05	[1.56-2.70]	Affymetrix [906600]	N
603	chr6_mann_hap4	2450040	2450041	rs3130564	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.33	PSORS1C1	rs3130564-T	0.1934	1E-42		2.62	[NR]	Illumina [242824]	N
603	chr6_mann_hap4	2450639	2450640	rs75881311	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.33	NR	rs75881311-A	0.082	3E-13	(conditional)	1.279	[1.21-1.35]	Illumina [11270530] (imputed)	N
603	chr6_mann_hap4	2450671	2450672	rs61444472	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	683 Turkish ancestry cases, 1,721 Turkish ancestry controls	NA	6p21.33	PSORSIC1	rs61444472-?	NR	2E-17	(conditional on rs2844678 and rs9262437)			Illumina [4495750] (imputed)	N
603	chr6_mann_hap4	2451330	2451331	rs3132565	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	6p21.33	NR	rs3132565-A	NR	1E-9		1.07	[NR]	Illumina [7158791] (imputed)	N
603	chr6_mann_hap4	2451561	2451562	rs3094669	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	6p21.33	NR	rs3094669-G	0.135689518720733	6E-9		0.015982522	[0.011-0.021] unit decrease	NR [NR]	N
603	chr6_mann_hap4	2451955	2451956	rs13198298	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	6p21.33	NR	rs13198298-T	0.101343027086662	2E-12		0.010678657	[0.0077-0.0137] unit increase	NR [NR]	N
603	chr6_mann_hap4	2451955	2451956	rs13198298	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	6p21.33	NR	rs13198298-T	0.101343027086662	3E-12		0.01306148	[0.0094-0.0167] unit increase	NR [NR]	N
603	chr6_mann_hap4	2451955	2451956	rs13198298	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	6p21.33	NR	rs13198298-T	0.101343027086662	6E-12		0.013910175	[0.0099-0.0179] unit increase	NR [NR]	N
603	chr6_mann_hap4	2452427	2452428	rs1265101	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PSORS1C1	rs1265101-A	NR	5E-12		0.058179	[0.042-0.075] unit decrease	Affymetrix [321016] (imputed)	N
603	chr6_mann_hap4	2452960	2452961	rs28732100	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Subjective well-being (MTAG)	388,538 European ancestry individuals	NA	6p21.33	NR	rs28732100-C	0.9494	2E-8		0.0245	[0.016-0.033] unit increase	Illumina [NR] (imputed)	N
603	chr6_mann_hap4	2452960	2452961	rs28732100	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Neuroticism (MTAG)	168,105 European ancestry individuals	NA	6p21.33	NR	rs28732100-C	0.9458	2E-8		0.037	[0.024-0.05] unit decrease	Illumina [NR] (imputed)	N
603	chr6_mann_hap4	2452960	2452961	rs28732100	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms (MTAG)	354,862 European ancestry individuals	NA	6p21.33	NR	rs28732100-C	0.9481	2E-9		0.0293	[0.02-0.039] unit decrease	Illumina [NR] (imputed)	N
603	chr6_mann_hap4	2453222	2453223	rs3094665	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	PSORS1C1	rs3094665-C	NR	1E-8		0.020395	[0.013-0.027] unit decrease	Affymetrix [323123] (imputed)	N
603	chr6_mann_hap4	2453632	2453633	rs3132559	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PSORS1C1	rs3132559-G	NR	2E-8		0.0159183	[0.01-0.021] unit decrease	Affymetrix [321016] (imputed)	N
603	chr6_mann_hap4	2453632	2453633	rs3132559	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	PSORS1C1	rs3132559-G	NR	2E-9		0.0185127	[0.012-0.025] unit decrease	Affymetrix [323123] (imputed)	N
603	chr6_mann_hap4	2453677	2453678	rs1265100	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6p21.33		rs1265100-?	NR	8E-13		0.894617	[0.86-0.93]	NR [685523]	N
603	chr6_mann_hap4	2453780	2453781	rs1265099	30626913	Amare AT	2019-01-09	Mol Psychiatry	Bivariate genome-wide association analyses of the broad depression phenotype combined with major depressive disorder, bipolar disorder or schizophrenia reveal eight novel genetic loci for depression.	Broad depression or schizophrenia	9,240 European ancestry broad depression cases, 9,519 European ancestry broad depression controls, 51,258 European ancestry individuals, 36,989 European and East Asian ancestry schizophrenia cases, 113,075 European and East Asian ancestry schizophrenia controls	322,580 individuals	6p21.33	PSORS1C2	rs1265099-A	0.41	2E-10				Affymetrix, Illumina [at least 918921] (imputed)	N
603	chr6_mann_hap4	2454000	2454001	rs2074478	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.33		rs2074478-T	0.809793	4E-16		1.0453895	[1.03-1.05]	Affymetrix, Illumina [9851866] (imputed)	N
603	chr6_mann_hap4	2454635	2454636	rs3130573	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	PSORS1C1, PSORS1C2	rs3130573-G	NR	1E-9		0.0200379	[0.014-0.026] unit decrease	Affymetrix [323858] (imputed)	N
603	chr6_mann_hap4	2454635	2454636	rs3130573	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	PSORS1C1, PSORS1C2	rs3130573-G	NR	3E-9		0.0196118	[0.013-0.026] unit decrease	Affymetrix [127266] (imputed)	N
603	chr6_mann_hap4	2454635	2454636	rs3130573	21750679	Allanore Y	2011-07-07	PLoS Genet	Genome-wide scan identifies TNIP1, PSORS1C1, and RHOB as novel risk loci for systemic sclerosis.	Systemic sclerosis	564 European ancestry cases, 1,776 European ancestry controls	1,682 European ancestry cases, 3,926 European ancestry controls	6p21.33	PSORS1C1	rs3130573-G	0.32	6E-10		1.25	[1.17-1.35]	Illumina [489814]	N
603	chr6_mann_hap4	2454826	2454827	rs1265097	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PSORS1C1, PSORS1C2	rs1265097-A	NR	3E-9		0.0309409	[0.021-0.041] unit increase	Affymetrix [319769] (imputed)	N
603	chr6_mann_hap4	2454826	2454827	rs1265097	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	PSORS1C1, PSORS1C2	rs1265097-A	NR	4E-8		0.0285098	[0.018-0.039] unit increase	Affymetrix [319769] (imputed)	N
603	chr6_mann_hap4	2454826	2454827	rs1265097	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PSORS1C1, PSORS1C2	rs1265097-A	NR	3E-15		0.0410297	[0.031-0.051] unit decrease	Affymetrix [321016] (imputed)	N
603	chr6_mann_hap4	2454826	2454827	rs1265097	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	PSORS1C1, PSORS1C2	rs1265097-A	NR	7E-10		0.0349645	[0.024-0.046] unit decrease	Affymetrix [323123] (imputed)	N
603	chr6_mann_hap4	2454826	2454827	rs1265097	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	6p21.33	PSORS1C1	rs1265097-C	0.917203	7E-18		0.0323248	[0.025-0.04] unit decrease	Affymetrix [NR] (imputed)	N
603	chr6_mann_hap4	2454826	2454827	rs1265097	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	6p21.33	NR	rs1265097-?	NR	8E-7		0.04125219	[0.025-0.058] unit decrease	Illumina [34656550] (imputed)	N
603	chr6_mann_hap4	2454826	2454827	rs1265097	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.33	PSORS1C2, PSORS1C1	rs1265097-A	0.1234	1E-10		0.072	[0.05-0.094] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
603	chr6_mann_hap4	2454826	2454827	rs1265097	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	6p21.33	PSORS1C1, PSORS1C2	rs1265097-A	0.115	2E-32		0.059	[0.049-0.069] unit decrease	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
603	chr6_mann_hap4	2454856	2454857	rs1265096	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	6p21.33	NR	rs1265096-?		7E-9	(SFTPD)	0.3365	[NR] unit increase	Illumina [NR]	N
603	chr6_mann_hap4	2454973	2454974	rs16898823	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals	at least 101,293 European ancestry individuals	6p21.33	PSORS1C1, PSORS1C2	rs16898823-A	0.9	3E-8	(Japanese)	0.037	[0.023-0.051] unit increase	Illumina [5864938] (imputed)	N
603	chr6_mann_hap4	2455554	2455555	rs1265093	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PSORS1C1	rs1265093-A	NR	2E-11		0.0205689	[0.015-0.027] unit increase	Affymetrix [319769] (imputed)	N
603	chr6_mann_hap4	2455554	2455555	rs1265093	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	PSORS1C1	rs1265093-A	NR	1E-10		0.0198483	[0.014-0.026] unit increase	Affymetrix [319769] (imputed)	N
603	chr6_mann_hap4	2455554	2455555	rs1265093	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	PSORS1C1	rs1265093-A	NR	2E-11		0.0223747	[0.016-0.029] unit decrease	Affymetrix [323123] (imputed)	N
603	chr6_mann_hap4	2455554	2455555	rs1265093	23144326	Kim DK	2012-11-09	Am J Respir Crit Care Med	Genome-wide association analysis of blood biomarkers in chronic obstructive pulmonary disease.	Chronic obstructive pulmonary disease-related biomarkers	Up to 1,951 European ancestry smokers	NA	6p21.33	PSORS1C1, CCHCR1	rs1265093-A	0.26	6E-9	(SP-D)			Illumina [588352]	N
603	chr6_mann_hap4	2455625	2455626	rs2285803	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PSORS1C1	rs2285803-T	NR	3E-8		0.0173578	[0.011-0.023] unit decrease	Affymetrix [319769] (imputed)	N
603	chr6_mann_hap4	2455625	2455626	rs2285803	33875642	Duran-Lozano L	2021-04-19	Blood Cancer J	Germline variants at SOHLH2 influence multiple myeloma risk.	Multiple myeloma	4,376 European ancestry cases, 345,887 European ancestry controls	5,598 European ancestry cases, 15,261 European ancestry controls	6p21.33	PSORS1C2	rs2285803-T	0.26	1E-11		1.17	[NR]	Illumina [33000000] (imputed)	N
603	chr6_mann_hap4	2455625	2455626	rs2285803	23955597	Chubb D	2013-08-18	Nat Genet	Common variation at 3q26.2, 6p21.33, 17p11.2 and 22q13.1 influences multiple myeloma risk.	Multiple myeloma	2,335 European ancestry cases, 7,306 European ancestry controls	2,357 European ancestry cases, 3,684 European ancestry controls	6p21.33	PSORS1C1, CCHCR1, TCF19, POU5F1, CDSN	rs2285803-A	0.32	1E-10		1.192	[1.13-1.26]	Illumina [414804]	N
603	chr6_mann_hap4	2456496	2456497	rs1265091	32769997	Zhou W	2020-08-07	Nat Commun	GWAS of thyroid stimulating hormone highlights pleiotropic effects and inverse association with thyroid cancer.	Thyroid stimulating hormone levels	119,715 European ancestry individuals	NA	6p21.33	PSORS1C1	rs1265091-T	0.187386210350798	5E-15		0.0553	[0.041-0.069] SD increase	Illumina [22400000] (imputed)	N
603	chr6_mann_hap4	2456496	2456497	rs1265091	30367059	Teumer A	2018-10-26	Nat Commun	Genome-wide analyses identify a role for SLC17A4 and AADAT in thyroid hormone regulation.	Thyroid stimulating hormone levels	54,288 European ancestry individuals	up to 22,383 European ancestry individuals	6p21.33	PSORS1C1	rs1265091-T	0.2	5E-15		0.058	[0.044-0.072] unit increase	Affymetrix, Illumina [8048941] (imputed)	N
603	chr6_mann_hap4	2457902	2457903	rs9263737	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Lymphocyte counts	62,076 Japanese ancestry individuals	NA	6p21.33	NR	rs9263737-?	NR	4E-8		0.03399	[0.022-0.046] unit decrease novel	Illumina [6108953] (imputed)	N
603	chr6_mann_hap4	2458239	2458240	rs1265086	33143745	Andlauer TFM	2020-11-04	BMC Med	Treatment- and population-specific genetic risk factors for anti-drug antibodies against interferon-beta: a GWAS.	Binding antibody response to interferon beta therapy in multiple sclerosis (antibody levels; all treatment preparations)	up to 2,000 German and Swedish ancestry individuals	up to 757 German and Swedish ancestry individuals	6p21.33		rs1265086-T	0.38	5E-9	(conditional on rs9272071 + rs28746882)	0.15234222	[-0.1--0.2] unit decrease	Illumina [8550834] (imputed)	N
603	chr6_mann_hap4	2459713	2459714	rs9263739	19915573	Asano K	2009-11-15	Nat Genet	A genome-wide association study identifies three new susceptibility loci for ulcerative colitis in the Japanese population.	Ulcerative colitis	376 Japanese ancestry cases, 934 Japanese ancestry controls	376 Japanese ancestry cases, 1,097 Japanese ancestry controls	6p21.33	HLA	rs9263739-T	0.15	4E-67		2.73	[2.43-3.07]	Illumina [513923]	N
603	chr6_mann_hap4	2460032	2460033	rs1265081	32276964	Shete S	2020-04-10	Cancer Res	A genome-wide association study identifies two novel susceptible regions for squamous cell carcinoma of the head and neck.	Head and neck squamous cell carcinoma	2,171 European ancestry cases, 4,493 European ancestry controls	5,205 European ancestry cases, 3,232 European ancestry controls	6p21.33	CCHCR1	rs1265081-A	0.52	4E-10		1.1764705	[1.11-1.23]	Illumina [7858089] (imputed)	N
603	chr6_mann_hap4	2460432	2460433	rs1265080	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Non-Hodgkin's lymphoma	2,400 European ancestry cases, 410,350 European ancestry controls	NA	6p21.33		rs1265080-A	NR	2E-8		1.1785504	NR	Affymetrix [7846216] (imputed)	N
603	chr6_mann_hap4	2461470	2461471	rs1265075	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6p21.33	CCHCR1	rs1265075-A	0.076201	5E-17		0.037481945	[0.029-0.046] unit increase	Affymetrix [93095623] (imputed)	N
603	chr6_mann_hap4	2461470	2461471	rs1265075	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	6p21.33	CCHCR1	rs1265075-A	0.076277	4E-25		0.04465471	[0.036-0.053] unit decrease	Affymetrix [93095623] (imputed)	N
603	chr6_mann_hap4	2461470	2461471	rs1265075	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6p21.33	CCHCR1	rs1265075-A	0.076136	8E-24		0.044859033	[0.036-0.054] unit decrease	Affymetrix [93095623] (imputed)	N
603	chr6_mann_hap4	2461470	2461471	rs1265075	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	6p21.33	CCHCR1	rs1265075-A	0.07622	8E-10		0.026229646	[0.018-0.035] unit increase	Affymetrix [93095623] (imputed)	N
603	chr6_mann_hap4	2461632	2461633	rs886401	33143745	Andlauer TFM	2020-11-04	BMC Med	Treatment- and population-specific genetic risk factors for anti-drug antibodies against interferon-beta: a GWAS.	Binding antibody response to interferon beta therapy in multiple sclerosis (antibody levels; IFN?-1a subcutaneous and intramuscular)	up to 2,000 German and Swedish ancestry individuals	up to 757 German and Swedish ancestry individuals	6p21.33		rs886401-A	NR	4E-12		0.24661802	[0.18-0.32] unit increase	Illumina [8550834] (imputed)	N
603	chr6_mann_hap4	2463257	2463258	rs2240060	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals, 6,795 African American individuals, 6,324 East Asian ancestry individuals, 2,335 South Asian ancestry individuals, 1,442 Hispanic individuals	NA	6p21.33	CCHCR1	rs2240060-A	NR	3E-10		0.0137	[0.0094-0.018] unit increase	Affymetrix, Illumina [8034757] (imputed)	N
603	chr6_mann_hap4	2463257	2463258	rs2240060	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals	NA	6p21.33	CCHCR1	rs2240060-A	0.2881	6E-10		0.0136336	[0.0093-0.018] unit increase	Affymetrix, Illumina [8603712] (imputed)	N
603	chr6_mann_hap4	2463257	2463258	rs2240060	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Microalbuminuria	51,861 European, African American, East Asian, South Asian or Hispanic ancestry cases, 297,093 European, African American, East Asian, South Asian or Hispanic ancestry controls	NA	6p21.33	CCHCR1	rs2240060-A	NR	4E-7		1.0380044	[1.02-1.05]	Affymetrix, Illumina [8326000] (imputed)	N
603	chr6_mann_hap4	2464559	2464560	rs130071	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.33		rs130071-A	NR	3E-11		1.1198208	[1.08-1.16]	Affymetrix [7846216] (imputed)	N
603	chr6_mann_hap4	2464559	2464560	rs130071	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6p21.33	NR	rs130071-G	0.7038	3E-16		1.0548522	[1.04-1.07]	Affymetrix [15688218] (imputed)	N
603	chr6_mann_hap4	2464875	2464876	rs3132535	27363682	Mitchell JS	2016-07-01	Nat Commun	Genome-wide association study identifies multiple susceptibility loci for multiple myeloma.	Multiple myeloma	7,319 European ancestry cases, 234,385 European ancestry controls	2,547 European ancestry cases, 4,803 European ancestry controls	6p21.33	NR	rs3132535-A		3E-17		1.2	[1.15-1.25]	Illumina [at least 7182761] (imputed)	N
603	chr6_mann_hap4	2464976	2464977	rs3131014	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	CCHCR1	rs3131014-A	NR	1E-8		0.0188268	[0.012-0.025] unit increase	Affymetrix [319769] (imputed)	N
603	chr6_mann_hap4	2464976	2464977	rs3131014	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	CCHCR1	rs3131014-A	NR	2E-11		0.0223184	[0.016-0.029] unit decrease	Affymetrix [321016] (imputed)	N
603	chr6_mann_hap4	2464976	2464977	rs3131014	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	CCHCR1	rs3131014-A	NR	7E-15		0.0280938	[0.021-0.035] unit decrease	Affymetrix [323123] (imputed)	N
603	chr6_mann_hap4	2465088	2465089	rs9263761	33239696	Steinthorsdottir V	2020-11-25	Nat Commun	Genetic predisposition to hypertension is associated with preeclampsia in European and Central Asian women.	Preeclampsia (maternal genotype effect)	2,296 Central Asian ancestry cases, 2,059 Central Asian ancestry controls, 7,219 European ancestry cases, 155,660 European ancestry controls	592 Kazakh ancestry cases, 361 Kazakh ancestry controls, 2,043 European ancestry cases, 6,018 European ancestry controls	6p21.33		rs9263761-G	0.76	2E-6		1.11	[1.06-1.16]	Illumina [11796347] (imputed)	N
603	chr6_mann_hap4	2465424	2465425	rs1265115	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	CCHCR1	rs1265115-A	NR	6E-9		0.0193434	[0.013-0.026] unit decrease	Affymetrix [323123] (imputed)	N
603	chr6_mann_hap4	2466368	2466369	rs1265112	21810746	Chantarangsu S	2011-08-01	Clin Infect Dis	Genome-wide association study identifies variations in 6p21.3 associated with nevirapine-induced rash.	Nevirapine-induced rash	72 Thai ancestry nevirapine-induced rash HIV cases, 77 Thai ancestry nevirapine-tolerant rash HIV cases	88 Thai ancestry nevirapine-induced rash HIV cases, 145 Thai ancestry nevirapine-tolerant HIV cases		CCHCR1	rs1265112-G	0.06	1E-8		4.36	[2.58-7.36]	Illumina [499730]	N
603	chr6_mann_hap4	2466860	2466861	rs130067	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	6p21.33	NR	rs130067-G	0.2	2E-7		1.05	[1.03-1.07]	Illumina [20370935] (imputed)	N
603	chr6_mann_hap4	2466860	2466861	rs130067	21743467	Kote-Jarai Z	2011-07-10	Nat Genet	Seven prostate cancer susceptibility loci identified by a multi-stage genome-wide association study.	Prostate cancer	6,621 European ancestry cases, 6,939 European ancestry controls	22,957 European ancestry cases, 23,234 European ancestry controls, 420 East Asian ancestry cases, 433 East Asian ancestry controls, 112 African American cases, 298 African American controls, 7,140 cases, 5,455 controls	6p21.33	CCHCR1	rs130067-G	0.21	3E-8		1.05	[1.02-1.09]	NR [2600000] (imputed)	N
603	chr6_mann_hap4	2468218	2468219	rs1265108	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	CCHCR1	rs1265108-T	NR	1E-8		0.0172707	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
603	chr6_mann_hap4	2468218	2468219	rs1265108	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	CCHCR1	rs1265108-T	NR	1E-12		0.0213867	[0.015-0.027] unit decrease	Affymetrix [321016] (imputed)	N
603	chr6_mann_hap4	2468218	2468219	rs1265108	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	CCHCR1	rs1265108-T	NR	8E-15		0.0255848	[0.019-0.032] unit decrease	Affymetrix [323123] (imputed)	N
603	chr6_mann_hap4	2469787	2469788	rs143334143	33307546	Pairo-Castineira E	2020-12-11	Nature	Genetic mechanisms of critical illness in Covid-19.	COVID-19 (critical illness vs population)	2,804 European ancestry cases, 2,415 European, South Asian and Hispanic or Latin American ancestry cases, 687,911 European ancestry controls, 477,741 European, South Asian and Hispanic or Latin American ancestry controls	NA	6p21.33		rs143334143-A	NR	2E-10		1.3	[1.27-1.48]	Illumina [NR] (imputed)	N
603	chr6_mann_hap4	2470859	2470860	rs130065	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8 on CD28+ CD45RA+ CD8+ T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs130065-A	0.16421	1E-14		0.3127	[0.23-0.39] unit decrease	Illumina [17954496] (imputed)	N
603	chr6_mann_hap4	2476706	2476707	rs9263789	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	TCF19	rs9263789-A	NR	3E-9		0.0228494	[0.015-0.03] unit increase	Affymetrix [321169] (imputed)	N
603	chr6_mann_hap4	2476929	2476930	rs3130934	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	6p21.33		rs3130934-A	0.315939	3E-10		0.028368	[0.02-0.037] unit increase	NR [11722792] (imputed)	N
603	chr6_mann_hap4	2476929	2476930	rs3130934	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	6p21.33		rs3130934-A	0.315939	3E-9		0.0263765	[0.018-0.035] unit increase	NR [11722792] (imputed)	N
603	chr6_mann_hap4	2477652	2477653	rs7750641	33909500	Moll M	2021-04-28	Am J Physiol Lung Cell Mol Physiol	A Systematic Analysis of Protein-altering Exonic Variants in Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease	up to 31,465 European ancestry cases, up to 203,688 European ancestry controls, up to 1,413 African ancestry cases, up to 6,080 African ancestry controls, up to 287 East Asian ancestry cases, up to 7,484 East Asian ancestry controls, up to 61 Hispanic cases, up to 613 Hispanic controls	NA	6p21.33	TCF19	rs7750641-T	0.15	1E-12		1.11	[1.08 -1.14]	Illumina [at least 109036]	N
603	chr6_mann_hap4	2477652	2477653	rs7750641	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.33	TCF19	rs7750641-T	0.1263	3E-58		3.35	[NR]	Illumina [242824]	N
603	chr6_mann_hap4	2477958	2477959	rs2073721	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes (adjusted for BMI)	up to 48,286 European ancestry cases, up to 250,671 European ancestry controls	NA	6p21.33	MHC	rs2073721-G	0.742	6E-10		1.04	[1.03-1.06]	Affymetrix, Illumina [247470]	N
603	chr6_mann_hap4	2477958	2477959	rs2073721	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes (adjusted for BMI)	48,286 European ancestry cases, 250,671 European ancestry controls, 33,126 African American, East Asian, Hispanic/Latino or South Asian cases, 120,161 African American, East Asian, Hispanic/Latino or South Asian controls	NA	6p21.33	MHC	rs2073721-G	0.749	2E-9		1.04	[1.02-1.05]	Affymetrix, Illumina [247470]	N
603	chr6_mann_hap4	2477958	2477959	rs2073721	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes	up to 48,286 European ancestry cases, up to 250,671 European ancestry controls	NA	6p21.33	MHC	rs2073721-G	0.742	6E-9		1.04	[1.02-1.06]	Affymetrix, Illumina [247470]	N
603	chr6_mann_hap4	2477958	2477959	rs2073721	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes	48,286 European ancestry cases, 250,671 European ancestry controls, 33,126 African American, East Asian, Hispanic/Latino or South Asian cases, 120,161 African American, East Asian, Hispanic/Latino or South Asian controls	NA	6p21.33	MHC	rs2073721-G	0.749	2E-10		1.04	[1.02-1.05]	Affymetrix, Illumina [247470]	N
603	chr6_mann_hap4	2478935	2478936	rs1419881	25802187	Jiang DK	2015-04-28	Hepatology	Genetic variants in five novel loci including CFB and CD40 predispose to chronic hepatitis B.	Chronic hepatitis B infection	2,514 Chinese ancestry cases, 1,130 Chinese ancestry controls	6,600 Chinese ancestry cases, 8,127 Chinese ancestry controls	6p21.33	TCF19	rs1419881-G	0.55	3E-7		1.12	[1.08-1.18]	Illumina [3680900] (imputed)	N
603	chr6_mann_hap4	2478935	2478936	rs1419881	23760081	Kim YJ	2013-06-10	Hum Mol Genet	A genome-wide association study identified new variants associated with the risk of chronic hepatitis B.	Chronic hepatitis B infection	400 Korean ancestry cases, 1,000 Korean ancestry controls	971 Korean ancestry cases, 1,938 Korean ancestry controls	6p21.33	TCF19	rs1419881-?	NR	1E-18		1.37	[1.23-1.52]	Illumina [719265]	N
603	chr6_mann_hap4	2479787	2479788	rs182661945	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	6p21.33	NR	rs182661945-?	NR	2E-9		5.977	NR z score increase	Illumina [at least 830937] (imputed)	N
603	chr6_mann_hap4	2480428	2480429	rs3130933	33649182	Penova M	2021-03-01	Proc Natl Acad Sci U S A	Genome wide association study of HTLV-1-associated myelopathy/tropical spastic paraparesis in the Japanese population.	HTLV-1 associated myelopathy	731 Japanese ancestry cases, 846 Japanese ancestry controls	NA	6p21.33		rs3130933-T	0.04	5E-9		2.44	[1.81-3.29]	Illumina [126394]	N
603	chr6_mann_hap4	2483246	2483247	rs3130931	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	6p21.33	NR	rs3130931-C	0.6765	2E-32		0.0482	[0.04-0.056] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
603	chr6_mann_hap4	2483246	2483247	rs3130931	21801394	Genin E	2011-07-29	Orphanet J Rare Dis	Genome-wide association study of Stevens-Johnson Syndrome and Toxic Epidermal Necrolysis in Europe.	Drug-induced Stevens-Johnson syndrome or toxic epidermal necrolysis (SJS/TEN)	424 European ancestry cases, 1,881 European ancestry controls	NA	6p21.33	POU5F1	rs3130931-C	0.69	8E-7		1.54	[1.29-1.84]	Illumina [268914]	N
603	chr6_mann_hap4	2484348	2484349	rs185402687	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	6p21.33	POU5F1	rs185402687-C	0.0157	6E-14		0.1102721	[0.081-0.139] unit decrease	Affymetrix [~ 2500000] (imputed)	N
603	chr6_mann_hap4	2484811	2484812	rs3130501	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	6p21.33	POU5F1	rs3130501-G	0.7833	6E-9	(EA)	0.0693	[0.046-0.093] unit increase	Affymetrix, Illumina [NR] (imputed)	N
603	chr6_mann_hap4	2484811	2484812	rs3130501	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	6p21.33	POU5F1	rs3130501-G	0.7833	4E-12		0.063	[0.045-0.081] unit increase	Affymetrix, Illumina [NR] (imputed)	N
603	chr6_mann_hap4	2484811	2484812	rs3130501	21801394	Genin E	2011-07-29	Orphanet J Rare Dis	Genome-wide association study of Stevens-Johnson Syndrome and Toxic Epidermal Necrolysis in Europe.	Drug-induced Stevens-Johnson syndrome or toxic epidermal necrolysis (SJS/TEN)	424 European ancestry cases, 1,881 European ancestry controls	NA	6p21.33	POU5F1	rs3130501-G	0.74	2E-8		1.74	[1.43-2.13]	Illumina [268914]	N
603	chr6_mann_hap4	2485072	2485073	rs3132524	24509480	Mahajan A	2014-02-09	Nat Genet	Genome-wide trans-ancestry meta-analysis provides insight into the genetic architecture of type 2 diabetes susceptibility.	Type 2 diabetes	12,171 European ancestry cases, 56,862 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls	21,491 European ancestry cases, 55,647 European ancestry controls	6p21.33	TCF19, POU5F1	rs3132524-G		4E-9		1.07	[1.04-1.09]	Affymetrix, Illumina [2500000] (imputed)	N
603	chr6_mann_hap4	2486469	2486470	rs1062630	28654678	Mandage R	2017-06-27	PLoS One	Genetic factors affecting EBV copy number in lymphoblastoid cell lines derived from the 1000 Genome Project samples.	Epstein-Barr virus copy number in lymphoblastoid cell lines	389 East Asian ancestry individuals, 189 South Asian ancestry individuals, 492 European ancestry individuals, 467 Sub-Saharan African ancestry individuals, 59 African American individuals, 157 Hispanic/Latino individuals	NA	6p21.33	POU5F1	rs1062630-?	NR	1E-6				NR [at least 880000]	N
603	chr6_mann_hap4	2487813	2487814	rs879882	31935283	Du Z	2020-01-01	Blood Adv	A meta-analysis of genome-wide association studies of multiple myeloma among men and women of African ancestry.	Multiple myeloma	1,813 African American and African ancestry cases, 8,871 African American and African ancestry controls	NA	6p21.33	NR	rs879882-T	0.45	1E-6		1.2	[1.12-1.29]	Illumina [12683648] (imputed)	N
603	chr6_mann_hap4	2487813	2487814	rs879882	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	6p21.33	MICA	rs879882-?	NR	2E-7	(Conditioned on rs2256183)		[NR]	Affymetrix, Illumina [2834208] (imputed)	N
603	chr6_mann_hap4	2488409	2488410	rs1265159	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.33	intergenic	rs1265159-T	0.2191	4E-37		2.42	[NR]	Illumina [242824]	N
603	chr6_mann_hap4	2488514	2488515	rs885950	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	6p21.33	POU5F1, HCG27, HLA	rs885950-C	0.42	7E-13		1.08	[1.07-1.09]	Illumina [at least 560000] (imputed)	N
603	chr6_mann_hap4	2489103	2489104	rs1265158	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	POU5F1	rs1265158-G	NR	1E-8		0.0185854	[0.012-0.025] unit decrease	Affymetrix [323858] (imputed)	N
603	chr6_mann_hap4	2489103	2489104	rs1265158	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	POU5F1	rs1265158-G	NR	3E-8		0.0179118	[0.012-0.024] unit decrease	Affymetrix [127266] (imputed)	N
603	chr6_mann_hap4	2489103	2489104	rs1265158	28087736	Ludwig KU	2017-01-13	Hum Mol Genet	Imputation of orofacial clefting data identifies novel risk loci and sheds light on the genetic background of cleft lip ? cleft palate and cleft palate only.	Nonsyndromic cleft lip with or without cleft palate	399 European ancestry cases, 1,318 European ancestry controls, 666 European ancestry trios, 795 Asian trios	224 European ancestry cases, 921 European ancestry controls, 152 Mayan cases, 323 Mayan controls, 198 Middle Eastern cases, 391 Middle Eastern controls	6p21.33	NR	rs1265158-?		5E-6	(EA)			NR [8012124] (imputed)	N
603	chr6_mann_hap4	2489103	2489104	rs1265158	28087736	Ludwig KU	2017-01-13	Hum Mol Genet	Imputation of orofacial clefting data identifies novel risk loci and sheds light on the genetic background of cleft lip ? cleft palate and cleft palate only.	Nonsyndromic cleft lip with or without cleft palate	399 European ancestry cases, 1,318 European ancestry controls, 666 European ancestry trios, 795 Asian trios	224 European ancestry cases, 921 European ancestry controls, 152 Mayan cases, 323 Mayan controls, 198 Middle Eastern cases, 391 Middle Eastern controls	6p21.33	NR	rs1265158-?		3E-6	(All)			NR [8012124] (imputed)	N
603	chr6_mann_hap4	2489571	2489572	rs2269712	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.33		rs2269712-A	0.249	1E-10				Affymetrix [10369434] (imputed)	N
603	chr6_mann_hap4	2489571	2489572	rs2269712	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	POU5F1	rs2269712-A	NR	2E-8		0.0181335	[0.012-0.024] unit decrease	Affymetrix [319769] (imputed)	N
603	chr6_mann_hap4	2489844	2489845	rs116763857	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p21.33	PSORS1C3	rs116763857-G	0.027	1E-14		0.295	[0.22-0.37] unit decrease	Affymetrix, Illumina [7374092] (imputed)	N
604	chr6_mann_hap4	2490607	2490608	rs3094188	23266558	Yamazaki K	2012-12-21	Gastroenterology	A genome-wide association study identifies 2 susceptibility Loci for Crohn's disease in a Japanese population.	Crohn's disease	372 Japanese ancestry cases,3,389 Japanese ancestry controls	Up to 1,151 Japanese ancestry cases, up to 15,800 Japanese ancestry controls	6p21.33	PSORS1C3	rs3094188-C	0.280	7E-7		1.61	[1.33-1.94]	Illumina [4929034] (imputed)	N
604	chr6_mann_hap4	2490607	2490608	rs3094188	21801394	Genin E	2011-07-29	Orphanet J Rare Dis	Genome-wide association study of Stevens-Johnson Syndrome and Toxic Epidermal Necrolysis in Europe.	Drug-induced Stevens-Johnson syndrome or toxic epidermal necrolysis (SJS/TEN)	424 European ancestry cases, 1,881 European ancestry controls	NA	6p21.33	POU5F1	rs3094188-A	0.63	3E-8		1.59	[1.34-1.88]	Illumina [268914]	N
604	chr6_mann_hap4	2491872	2491873	rs887466	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation GrimAge acceleration	34,467 European ancestry individuals	NA	6p21.33	NR	rs887466-A	0.3815	5E-10		0.1928	[0.13-0.25] unit decrease	Affymetrix, Illumina [7568149] (imputed)	N
604	chr6_mann_hap4	2491943	2491944	rs3131018	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.33		rs3131018-A	0.369	3E-21				Affymetrix [10369434] (imputed)	N
604	chr6_mann_hap4	2491943	2491944	rs3131018	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p21.33		rs3131018-A	0.369	2E-16				Affymetrix [10369434] (imputed)	N
604	chr6_mann_hap4	2491943	2491944	rs3131018	21051598	Pereyra F	2010-11-04	Science	The major genetic determinants of HIV-1 control affect HLA class I peptide presentation.	HIV-1 control	516 European cases, 1,196 European controls, 341 African American cases, 892 African American controls, 117 Hispanic cases, 560 Hispanic controls	NA	6p21.33	PSORS1C3	rs3131018-C	0.625	4E-16	(EA)	2.1	[NR]	Illumina [1384048] (imputed)	N
604	chr6_mann_hap4	2492996	2492997	rs9404937	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	POU5F1, PSORS1C3	rs9404937-A	NR	7E-13		0.0235486	[0.017-0.03] unit decrease	Affymetrix [323123] (imputed)	N
604	chr6_mann_hap4	2495847	2495848	rs3130507	29227965	Pilling LC	2017-12-01	Aging (Albany NY)	Human longevity: 25 genetic loci associated in 389,166 UK biobank participants.	Parental longevity (mother's attained age)	412,937 British ancestry individuals	NA	6p21.33	PSORS1C3	rs3130507-G	0.72	2E-10		0.0155	[0.011-0.02] unit decrease	Affymetrix [11535925] (imputed)	N
604	chr6_mann_hap4	2495847	2495848	rs3130507	29227965	Pilling LC	2017-12-01	Aging (Albany NY)	Human longevity: 25 genetic loci associated in 389,166 UK biobank participants.	Parental longevity (combined parental attained age, Martingale residuals)	389,166 British ancestry individuals	NA	6p21.33	PSORS1C3	rs3130507-G	NR	4E-6			[NR]	Affymetrix [11535925] (imputed)	N
604	chr6_mann_hap4	2502634	2502635	rs7753892	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GNLY	5,366 Icelandic ancestry individuals	NA	6p21.33		rs7753892-C	0.3652	5E-15		0.154032	[0.12-0.19] unit increase	Illumina [7506463] (imputed)	N
604	chr6_mann_hap4	2502634	2502635	rs7753892	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GNLY	5,366 Icelandic ancestry individuals	NA	6p21.33		rs7753892-C	0.3652	2E-14		0.15056	[0.11-0.19] unit increase	Illumina [7506463] (imputed)	N
604	chr6_mann_hap4	2502734	2502735	rs13203101	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p21.33	NR	rs13203101-?	NR	3E-15		0.1435	[0.11-0.18] unit decrease	Illumina [at least 560000] (imputed)	N
604	chr6_mann_hap4	2502806	2502807	rs3130458	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	POU5F1	rs3130458-T	NR	6E-12		0.0238773	[0.017-0.031] unit decrease	Affymetrix [323858] (imputed)	N
604	chr6_mann_hap4	2502806	2502807	rs3130458	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	POU5F1	rs3130458-T	NR	3E-11		0.0230527	[0.016-0.03] unit decrease	Affymetrix [127266] (imputed)	N
604	chr6_mann_hap4	2503192	2503193	rs6922051	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	POU5F1	rs6922051-C	NR	7E-12		0.0225553	[0.016-0.029] unit decrease	Affymetrix [323123] (imputed)	N
604	chr6_mann_hap4	2504160	2504161	rs1265181	30921485	Bejaoui Y	2019-03-28	Exp Dermatol	Genome-wide association study of psoriasis in an Egyptian population.	Psoriasis	215 Egyptian ancestry cases, 416 Egyptian ancestry controls	321 Egyptian ancestry cases, 253 Egyptian ancestry controls	6p21.33	HCG27	rs1265181-?	NR	1E-10		2.0	[1.62-2.45]	Illumina [312245]	N
604	chr6_mann_hap4	2504160	2504161	rs1265181	19169255	Zhang XJ	2009-01-25	Nat Genet	Psoriasis genome-wide association study identifies susceptibility variants within LCE gene cluster at 1q21.	Psoriasis	1,139 Han Chinese ancestry cases, 1,132 Han Chinese ancestry controls	5,721 Chinese ancestry cases, 7,340 Chinese ancestry controls	6p21.33	MHC	rs1265181-?	NR	2E-208		22.62		Illumina [494902]	N
604	chr6_mann_hap4	2504416	2504417	rs9368661	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	6p21.33	NR	rs9368661-T	0.258577	1E-19		0.02376896	[0.019-0.029] unit increase	Affymetrix [93095623] (imputed)	N
604	chr6_mann_hap4	2504561	2504562	rs9263850	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG299F13.17	rs9263850-G	NR	1E-9		0.0190638	[0.013-0.025] unit decrease	Affymetrix [321016] (imputed)	N
604	chr6_mann_hap4	2504561	2504562	rs9263850	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG299F13.17	rs9263850-G	NR	5E-16		0.0275644	[0.021-0.034] unit decrease	Affymetrix [323123] (imputed)	N
604	chr6_mann_hap4	2506561	2506562	rs9295958	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG299F13.17	rs9295958-A	NR	1E-10		0.0250366	[0.017-0.033] unit decrease	Affymetrix [323123] (imputed)	N
604	chr6_mann_hap4	2506938	2506938	rs145171179	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	6p21.33	XXbac-BPG299F13.17	rs145171179-GA	0.212169	4E-9		0.020656763	[0.014-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
604	chr6_mann_hap4	2507011	2507012	rs9263861	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	6p21.33	HLA region	rs9263861-?	NR	3E-8	(EA)			Affymetrix, Illumina [10537485] (imputed)	N
604	chr6_mann_hap4	2507011	2507012	rs9263861	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	6p21.33	HLA region	rs9263861-?	NR	3E-8				Affymetrix, Illumina [10537485] (imputed)	N
604	chr6_mann_hap4	2507210	2507211	rs7741829	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	6p21.33	XXbac-BPG299F13.17	rs7741829-C	0.289979	2E-13		0.019235091	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
604	chr6_mann_hap4	2507398	2507399	rs7742179	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG299F13.17	rs7742179-A	NR	3E-13		0.0215095	[0.016-0.027] unit decrease	Affymetrix [321016] (imputed)	N
604	chr6_mann_hap4	2507398	2507399	rs7742179	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG299F13.17	rs7742179-A	NR	9E-21		0.0299448	[0.024-0.036] unit decrease	Affymetrix [323123] (imputed)	N
604	chr6_mann_hap4	2508191	2508193	rs550239034	31577861	Dai J	2019-10-31	Int J Cancer	Genome-wide association study of INDELs identified four novel susceptibility loci associated with lung cancer risk.	Lung cancer	20,871 European ancestry cases, 15,971 European ancestry controls, 2,331 Chinese ancestry cases, 3,077 Chinese ancestry controls	NA	6p21.33	POU5F1	rs550239034-D	0.25	2E-7		0.92	[0.89-0.95]	Illumina [484196]	N
604	chr6_mann_hap4	2512350	2512351	rs28749551	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	6p21.33	XXbac-BPG299F13.17	rs28749551-C	0.189749	9E-23		0.029464645	[0.024-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
604	chr6_mann_hap4	2512350	2512351	rs28749551	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	6p21.33	XXbac-BPG299F13.17	rs28749551-C	0.1902	8E-18		0.03930922	[0.03-0.048] unit decrease	Affymetrix [~ 2500000] (imputed)	N
604	chr6_mann_hap4	2513157	2513158	rs28362333	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	6p21.33		rs28362333-C	0.530396419	7E-20		0.08448383	[0.066-0.103] unit increase	Illumina [13429769] (imputed)	N
604	chr6_mann_hap4	2514223	2514224	rs28362345	31935283	Du Z	2020-01-01	Blood Adv	A meta-analysis of genome-wide association studies of multiple myeloma among men and women of African ancestry.	Multiple myeloma	1,813 African American and African ancestry cases, 8,871 African American and African ancestry controls	NA	6p21.33	NR	rs28362345-T	0.7	6E-7		1.24	[1.14-1.34]	Illumina [12683648] (imputed)	N
604	chr6_mann_hap4	2516420	2516421	rs6903896	20585627	Eriksson N	2010-06-24	PLoS Genet	Web-based, participant-driven studies yield novel genetic associations for common traits.	Common traits (Other)	9,126 European ancestry individuals	NA	6p21.33	NR	rs6903896-?	NR	6E-7	(sneeze)			Illumina [535076]	N
604	chr6_mann_hap4	2516788	2516789	rs9263868	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p21.33	NR	rs9263868-?	NR	4E-21		0.1525	[0.12-0.18] unit increase	Illumina [at least 560000] (imputed)	N
604	chr6_mann_hap4	2541157	2541158	rs9263993	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	6p21.33	HLA region	rs9263993-?	NR	9E-9	(EA)			Affymetrix, Illumina [10537485] (imputed)	N
604	chr6_mann_hap4	2541157	2541158	rs9263993	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	6p21.33	HLA region	rs9263993-?	NR	2E-7				Affymetrix, Illumina [10537485] (imputed)	N
604	chr6_mann_hap4	2541188	2541189	rs6904670	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28- CD8+ T cell %CD8+ T cell	3,440 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs6904670-G	0.64142	3E-8		0.1458	[0.094-0.197] unit decrease	Illumina [18357815] (imputed)	N
604	chr6_mann_hap4	2543603	2543604	rs6928399	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG299F13.16	rs6928399-T	NR	7E-12		0.0204256	[0.015-0.026] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_mann_hap4	2543603	2543604	rs6928399	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG299F13.16	rs6928399-T	NR	9E-11		0.0193191	[0.013-0.025] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_mann_hap4	2543603	2543604	rs6928399	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG299F13.16	rs6928399-T	NR	7E-11		0.0196879	[0.014-0.026] unit increase	Affymetrix [321169] (imputed)	N
604	chr6_mann_hap4	2544380	2544381	rs7769059	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	6p21.33	HCG27	rs7769059-G	0.716625	1E-12		0.0150833	[0.011-0.019] unit increase	Affymetrix [NR] (imputed)	N
604	chr6_mann_hap4	2545653	2545654	rs3134783	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Sarcoidosis	1,718 European ancestry cases, 484,955 European ancestry controls, 220 East Asian ancestry cases, 177,667 East Asian ancestry controls	NA	6p21.33		rs3134783-A	NR	6E-9		0.2583	[0.17-0.35] unit increase	Affymetrix, Illumina [25845061] (imputed)	N
604	chr6_mann_hap4	2545904	2545905	rs3130941	24324648	Yatagai Y	2013-12-04	PLoS One	Genome-wide association study for levels of total serum IgE identifies HLA-C in a Japanese population.	IgE levels	967 Japanese ancestry individuals, 213 Japanese ancestry asthmatic individuals	1,894 Japanese ancestry individuals, 580 Japanese ancestry asthmatic individuals	6p21.33	HCG27, HLA-C	rs3130941-C	0.25	1E-10		0.098	unit increase	Illumina [479940]	N
604	chr6_mann_hap4	2547595	2547596	rs3130473	29534301	Nishida N	2018-03-13	Hepatology	Key HLA-DRB1-DQB1 haplotypes and role of the BTNL2 gene for response to a hepatitis B vaccine.	Response to hepatitis B vaccine	107 Japanese ancestry low responder individuals, 351 Japanese ancestry intermediate responder individuals, 735 Japanese ancestry high responder individuals	NA	6p21.33	HLA-C	rs3130473-?		8E-6		0.128	unit decrease	Affymetrix [427664]	N
604	chr6_mann_hap4	2547852	2547853	rs3869114	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.33		rs3869114-G	NR	2E-7		1.204	[1.122-1.292]	Affymetrix [7846216] (imputed)	N
604	chr6_mann_hap4	2548152	2548153	rs11967684	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	6p21.33	intergenic	rs11967684-A	0.3428	2E-24		0.03858957	[0.031-0.046] unit increase	Affymetrix [~ 2500000] (imputed)	N
604	chr6_mann_hap4	2548152	2548153	rs11967684	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	6p21.33	intergenic	rs11967684-A	0.3428	1E-29		0.04284561	[0.035-0.05] unit increase	Affymetrix [~ 2500000] (imputed)	N
604	chr6_mann_hap4	2549150	2549151	rs7757622	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG299F13.16	rs7757622-C	NR	2E-16		0.023531	[0.018-0.029] unit decrease	Affymetrix [321169] (imputed)	N
604	chr6_mann_hap4	2553064	2553065	rs3869115	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	46,511 Asian ancestry cases, 169,776 Asian ancestry controls	NA	6p21.33	NR	rs3869115-G	0.1981	1E-17		0.1004	[0.077-0.123] unit decrease	Affymetrix, Illumina [1077427] (imputed)	N
604	chr6_mann_hap4	2553064	2553065	rs3869115	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p21.33	HCG27, HLA-C	rs3869115-C	0.06	6E-7	(Turkish)	2.23	[1.62-3.08]	Illumina [up to 547389]	N
604	chr6_mann_hap4	2553356	2553357	rs3134770	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p21.33	NR	rs3134770-?	NR	8E-8		0.0723	[0.046-0.099] unit increase	Illumina [at least 560000] (imputed)	N
604	chr6_mann_hap4	2554575	2554576	rs3130685	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Effector Memory CD8+ T cell Absolute Count	3,395 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs3130685-T	0.34389	2E-8		0.1803	[0.12-0.24] unit increase	Illumina [18332267] (imputed)	N
604	chr6_mann_hap4	2554575	2554576	rs3130685	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8+ T cell Absolute Count	3,652 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs3130685-T	0.34283	4E-11		0.1887	[0.13-0.24] unit increase	Illumina [18427348] (imputed)	N
604	chr6_mann_hap4	2554575	2554576	rs3130685	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8+ T cell %leukocyte	3,668 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs3130685-T	0.34283	1E-9		0.1801	[0.12-0.24] unit increase	Illumina [18430788] (imputed)	N
604	chr6_mann_hap4	2554575	2554576	rs3130685	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28- CD8+ T cell Absolute Count	3,408 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs3130685-T	0.3439	3E-10		0.1894	[0.13-0.25] unit increase	Illumina [18340221] (imputed)	N
604	chr6_mann_hap4	2554575	2554576	rs3130685	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD127- CD8+ T cell Absolute Count	3,371 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs3130685-T	0.34485	9E-10		0.1905	[0.13-0.25] unit increase	Illumina [18321960] (imputed)	N
604	chr6_mann_hap4	2556124	2556125	rs9461666	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6p21.33		rs9461666-G	0.021815	7E-10		0.0478569	[0.033-0.063] unit increase	Affymetrix [93095623] (imputed)	N
604	chr6_mann_hap4	2556413	2556414	rs5875302	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	349,856 European ancestry individuals, 91,908 East Asian ancestry individuals	NA	6p21.33		rs5875302-C	NR	9E-24		0.046	[0.037-0.055] unit decrease	Affymetrix, Illumina [20529536] (imputed)	N
604	chr6_mann_hap4	2556945	2556946	rs3132497	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG299F13.16	rs3132497-G	NR	3E-9		0.0221455	[0.015-0.029] unit increase	Affymetrix [323123] (imputed)	N
604	chr6_mann_hap4	2560110	2560111	rs117506082	32072174	Okamoto D	2020-02-19	Inflamm Bowel Dis	Genetic Analysis of Ulcerative Colitis in Japanese Individuals Using Population-specific SNP Array.	Ulcerative colitis	601 Japanese ancestry cases, 1,962 Japanese ancestry controls	1,075 Japanese ancestry cases, 419 Japanese ancestry controls	6p21.33	HLA	rs117506082-G	NR	4E-88		3.39	[2.99-3.83]	NR [4760823] (imputed)	N
604	chr6_mann_hap4	2560202	2560203	rs1639106	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG299F13.16	rs1639106-T	NR	9E-12		0.0601547	[0.043-0.077] unit decrease	Affymetrix [321016] (imputed)	N
604	chr6_mann_hap4	2560415	2560416	rs117759870	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs117759870-?		6E-8		1.06	[1.04-1.09]	Illumina [7645193] (imputed)	N
604	chr6_mann_hap4	2565874	2565875	rs3130427	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	6p21.33		rs3130427-G	0.594789	2E-27		0.029043514	[0.024-0.034] unit increase	Affymetrix [93095623] (imputed)	N
604	chr6_mann_hap4	2566848	2566849	rs55839536	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs55839536-A	NR	2E-8		0.023416	[0.015-0.032] unit decrease	Affymetrix [321016] (imputed)	N
604	chr6_mann_hap4	2567130	2567131	rs7449932	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	6p21.33		rs7449932-C	0.223006	2E-9		0.0272642	[0.018-0.036] unit increase	NR [11722792] (imputed)	N
604	chr6_mann_hap4	2567676	2567677	rs3130436	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	6p21.33	NR	rs3130436-?	NR	4E-7		0.0523	[0.032-0.072] unit decrease	Illumina [at least 560000] (imputed)	N
604	chr6_mann_hap4	2567676	2567677	rs3130436	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	6p21.33	HCG27, HLA-C	rs3130436-?	NR	4E-7		1.0537407	[1.03-1.08]	Illumina [13754664] (imputed)	N
604	chr6_mann_hap4	2567916	2567917	rs3130439	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LILRB1	5,363 Icelandic ancestry individuals	NA	6p21.33		rs3130439-G	0.4964	8E-23		0.179906	[0.14-0.22] unit decrease	Illumina [7506463] (imputed)	N
604	chr6_mann_hap4	2568192	2568193	rs17197839	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-C	rs17197839-A	NR	1E-8		0.0267548	[0.018-0.036] unit decrease	Affymetrix [323123] (imputed)	N
604	chr6_mann_hap4	2568192	2568193	rs17197839	33549134	Adolphe C	2021-02-06	Genome Med	Genetic and functional interaction network analysis reveals global enrichment of regulatory T cell genes influencing basal cell carcinoma susceptibility.	Basal cell carcinoma	17,416 European ancestry cases, 375,455 European ancestry controls	NA	6p21.33	HLA-C	rs17197839-A	0.118172	3E-11		0.1165139	[0.082-0.151] unit decrease	Affymetrix [7260263] (imputed)	N
604	chr6_mann_hap4	2568244	2568245	rs1793892	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs1793892-C	NR	2E-9		0.0258258	[0.017-0.034] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_mann_hap4	2568244	2568245	rs1793892	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-C	rs1793892-C	NR	3E-9		0.0256321	[0.017-0.034] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_mann_hap4	2568262	2568263	rs17191538	33574277	Kawai Y	2021-02-11	NPJ Genom Med	Mapping of susceptible variants for cold medicine-related Stevens-Johnson syndrome by whole-genome resequencing.	Cold medicine-related Stevens-Johnson syndrome/toxic epidermal necrolysis (SJS/TEN) with severe ocular complications	133 Japanese ancestry cases, 418 Japanese ancestry controls	NA	6p21.33		rs17191538-G	0.2231	7E-7		2.483		Illumina [7608150]	N
604	chr6_mann_hap4	2568561	2568562	rs3095254	25096241	Keller MF	2014-08-05	Hum Mol Genet	Trans-ethnic meta-analysis of white blood cell phenotypes.	Monocyte count	9,810 Japanese ancestry individuals, 16,550 European ancestry individuals, 7,369 African American individuals	NA	6p21.33	MHC	rs3095254-C	0.461	8E-9	(Japanese)	0.035	[0.023-0.047] unit increase	Illumina [NR] (imputed)	N
604	chr6_mann_hap4	2568561	2568562	rs3095254	21738478	Okada Y	2011-06-30	PLoS Genet	Identification of nine novel loci associated with white blood cell subtypes in a Japanese population.	White blood cell types	8,794 Japanese ancestry individuals	5,998 Japanese ancestry individuals	6p21.33	MHC	rs3095254-C	0.46	6E-11	(monocyte count)	0.074	[0.05-0.09] unit increase	Illumina [2178645] (imputed)	N
604	chr6_mann_hap4	2569077	2569078	rs1793889	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.33	CCHCR1, CDSN, HCG27, HLA-C, POU5F1, PSORS1C1, PSORS1C2, PSORS1C3, TCF19	rs1793889-?		1E-11		1.0869565	[1.06-1.11]	Affymetrix, Illumina [NR]	N
604	chr6_mann_hap4	2571545	2571546	rs9264277	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.33		rs9264277-T	0.367	2E-13				Affymetrix [10369434] (imputed)	N
604	chr6_mann_hap4	2571545	2571546	rs9264277	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.33		rs9264277-T	0.367	4E-8				Affymetrix [10369434] (imputed)	N
604	chr6_mann_hap4	2571545	2571546	rs9264277	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.33		rs9264277-T	0.367	2E-36				Affymetrix [10369434] (imputed)	N
604	chr6_mann_hap4	2571545	2571546	rs9264277	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	6p21.33		rs9264277-T	0.367	1E-9				Affymetrix [10369434] (imputed)	N
604	chr6_mann_hap4	2571545	2571546	rs9264277	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs9264277-T	0.367	6E-12				Affymetrix [10369434] (imputed)	N
604	chr6_mann_hap4	2571595	2571596	rs201871433	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	6p21.33		rs201871433-C	0.598843295	3E-14		0.080714226	[0.06-0.101] unit increase	Illumina [13134967] (imputed)	N
604	chr6_mann_hap4	2573648	2573649	rs2440367	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs2440367-T	NR	4E-8		0.0177003	[0.011-0.024] unit increase	Affymetrix [321016] (imputed)	N
604	chr6_mann_hap4	2574115	2574116	rs150543164	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	6p21.33	NR	rs150543164-C	0.971256	7E-11		0.0420252	[0.029-0.055] unit decrease	NR [NR]	N
604	chr6_mann_hap4	2575064	2575065	rs9264354	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	6p21.33		rs9264354-T	0.225	2E-41				Affymetrix [10369434] (imputed)	N
604	chr6_mann_hap4	2575065	2575066	rs9264355	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs9264355-T	NR	2E-11		0.0253701	[0.018-0.033] unit increase	Affymetrix [321016] (imputed)	N
604	chr6_mann_hap4	2575236	2575237	rs6939900	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	6p21.33		rs6939900-C	0.644363	2E-13		0.0298309	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
604	chr6_mann_hap4	2575236	2575237	rs6939900	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	6p21.33		rs6939900-C	0.644357	3E-11		0.0278375	[0.02-0.036] unit decrease	NR [11722792] (imputed)	N
604	chr6_mann_hap4	2575236	2575237	rs6939900	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.33		rs6939900-T	0.35467	3E-26		0.03356077	[0.027-0.04] unit increase	Affymetrix [93095623] (imputed)	N
604	chr6_mann_hap4	2575419	2575420	rs17191797	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	6p21.33	intergenic	rs17191797-G	0.0881	1E-10		0.04047984	[0.028-0.053] unit decrease	Affymetrix [~ 2500000] (imputed)	N
604	chr6_mann_hap4	2576430	2576431	rs2844626	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Varicose veins	22,037 European ancestry cases, 437,665 European ancestry controls, 474 East Asian ancestry cases, 178,252 East Asian ancestry controls	NA	6p21.33		rs2844626-T	NR	1E-10		0.0734	[0.051-0.096] unit decrease	Affymetrix, Illumina [25842955] (imputed)	N
604	chr6_mann_hap4	2576601	2576602	rs9264408	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs9264408-G	NR	5E-13		0.0253984	[0.019-0.032] unit decrease	Affymetrix [319769] (imputed)	N
604	chr6_mann_hap4	2576601	2576602	rs9264408	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-C	rs9264408-G	NR	3E-12		0.0245478	[0.018-0.031] unit decrease	Affymetrix [319769] (imputed)	N
604	chr6_mann_hap4	2576811	2576812	rs9264413	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	6p21.33	intergenic	rs9264413-T	0.8098	4E-40		0.0600596	[0.051-0.069] unit decrease	Affymetrix [~ 2500000] (imputed)	N
604	chr6_mann_hap4	2576874	2576875	rs17192134	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	6p21.33		rs17192134-G	0.916	3E-52				Affymetrix [10369434] (imputed)	N
604	chr6_mann_hap4	2576874	2576875	rs17192134	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p21.33	NR	rs17192134-T	0.084521	2E-25		0.048713	[0.04-0.058] unit increase	Affymetrix [93095623] (imputed)	N
604	chr6_mann_hap4	2577318	2577319	rs17192225	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Prostate cancer	7,438 White British ancestry cases, 118,206 White British ancestry controls	NA	6p21.33		rs17192225-?	NR	2E-6		1.12175	[1.07-1.17]	NR [680312]	N
604	chr6_mann_hap4	2577597	2577598	rs9357120	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	91,908 East Asian ancestry individuals	NA	6p21.33		rs9357120-A	0.563923	1E-31		0.0533207	[0.044-0.062] unit decrease	Illumina [13469940] (imputed)	N
604	chr6_mann_hap4	2577597	2577598	rs9357120	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	81,042 East Asian ancestry individuals	NA	6p21.33	NR	rs9357120-T	0.42999	6E-32		0.058958	[0.049-0.069] SD units increase	Affymetrix, Illumina [16286709] (imputed)	N
604	chr6_mann_hap4	2578868	2578869	rs2853961	31080455	Fatumo S	2019-04-26	Front Genet	Complimentary Methods for Multivariate Genome-Wide Association Study Identify New Susceptibility Genes for Blood Cell Traits.	Blood cell traits (multivariate analysis)	up to 6,407 Sub-Saharan African ancestry individuals	NA	6p21.33	HLA-C	rs2853961-?	NR	4E-8				Illumina [20594536] (imputed)	N
604	chr6_mann_hap4	2578989	2578990	rs3130542	25802187	Jiang DK	2015-04-28	Hepatology	Genetic variants in five novel loci including CFB and CD40 predispose to chronic hepatitis B.	Chronic hepatitis B infection	2,514 Chinese ancestry cases, 1,130 Chinese ancestry controls	6,600 Chinese ancestry cases, 8,127 Chinese ancestry controls	6p21.33	HLA-C	rs3130542-A	0.16	9E-7		1.17	[1.10-1.24]	Illumina [3680900] (imputed)	N
604	chr6_mann_hap4	2578989	2578990	rs3130542	24162738	Hu Z	2013-10-27	Nat Genet	New loci associated with chronic hepatitis B virus infection in Han Chinese.	Hepatitis B	951 Han Chinese ancestry HBV carrier cases, 937 Han Chinese ancestry HBV cleared controls	4,230 Chinese ancestry HBV carrier cases, 3,051 Chinese ancestry HBV cleared controls, 2,622 Chinese ancestry controls	6p21.33	HLA-C	rs3130542-A	0.13	9E-14		1.33	[1.23-1.44]	Illumina [490610]	N
604	chr6_mann_hap4	2579329	2579330	rs2524108	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs2524108-G	NR	1E-9		0.0191519	[0.013-0.025] unit decrease	Affymetrix [319769] (imputed)	N
604	chr6_mann_hap4	2579329	2579330	rs2524108	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-C	rs2524108-G	NR	4E-9		0.0186193	[0.012-0.025] unit decrease	Affymetrix [319769] (imputed)	N
604	chr6_mann_hap4	2579329	2579330	rs2524108	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.33	HLA-C	rs2524108-G	0.273435	6E-44		0.050841797	[0.044-0.058] unit decrease	Affymetrix [93095623] (imputed)	N
604	chr6_mann_hap4	2579421	2579422	rs2844623	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	6p21.33	POU5F1, TCF19	rs2844623-C	0.78	1E-17		1.1	1.08-1.12	Illumina [12557761] (imputed)	N
604	chr6_mann_hap4	2579702	2579703	rs2524106	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs2524106-A	NR	1E-8		0.0194959	[0.013-0.026] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_mann_hap4	2579702	2579703	rs2524106	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-C	rs2524106-A	NR	4E-8		0.0188058	[0.012-0.026] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_mann_hap4	2579788	2579789	rs2524105	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	86,890 East Asian ancestry individuals	NA	6p21.33	NR	rs2524105-G	0.317247	4E-41		0.06908	[0.059-0.079] SD units increase	Affymetrix, Illumina [16279099] (imputed)	N
604	chr6_mann_hap4	2581387	2581388	rs9264533	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	6p21.33	HLA-C	rs9264533-C	0.8091	4E-33		0.05433897	[0.045-0.063] unit increase	Affymetrix [~ 2500000] (imputed)	N
604	chr6_mann_hap4	2581534	2581535	rs185207145	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin	108,054 Japanese ancestry individuals	NA	6p21.33	HCG27, HLA-C	rs185207145-?	NR	1E-8		0.05419	[0.036-0.073] unit increase novel	Illumina [6108953] (imputed)	N
604	chr6_mann_hap4	2582084	2582085	rs113509869	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	6p21.33	HLA-C	rs113509869-A	0.123764	9E-21		0.036061548	[0.029-0.044] unit decrease	Affymetrix [93095623] (imputed)	N
604	chr6_mann_hap4	2582155	2582156	rs2395470	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs2395470-A	NR	5E-15		0.0233443	[0.017-0.029] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_mann_hap4	2582155	2582156	rs2395470	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-C	rs2395470-A	NR	5E-14		0.0224589	[0.017-0.028] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_mann_hap4	2582249	2582249	rs139175860	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	6p21.33		rs139175860-TC	0.201723	2E-12		0.0316515	[0.023-0.04] unit increase	Illumina [13476299] (imputed)	N
604	chr6_mann_hap4	2582399	2582400	rs2853953	25802187	Jiang DK	2015-04-28	Hepatology	Genetic variants in five novel loci including CFB and CD40 predispose to chronic hepatitis B.	Chronic hepatitis B infection	2,514 Chinese ancestry cases, 1,130 Chinese ancestry controls	6,600 Chinese ancestry cases, 8,127 Chinese ancestry controls	6p21.33	HLA-C	rs2853953-A	0.9	5E-20		1.47	[1.35-1.59]	Illumina [3680900] (imputed)	N
604	chr6_mann_hap4	2582640	2582641	rs9264579	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	6p21.33		rs9264579-A	0.344224	5E-18		0.0325012	[0.025-0.04] unit increase	Illumina [13476266] (imputed)	N
604	chr6_mann_hap4	2583009	2583010	rs2853951	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-C	rs2853951-C	NR	3E-19		0.0279053	[0.022-0.034] unit increase	Affymetrix [323123] (imputed)	N
604	chr6_mann_hap4	2583069	2583070	rs2853950	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs2853950-T	NR	1E-10		0.0182212	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_mann_hap4	2583069	2583070	rs2853950	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-C	rs2853950-T	NR	4E-10		0.0177105	[0.012-0.023] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_mann_hap4	2583069	2583070	rs2853950	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HLA-C	rs2853950-T	NR	2E-9		0.0171726	[0.012-0.023] unit increase	Affymetrix [321169] (imputed)	N
604	chr6_mann_hap4	2583304	2583305	rs34131062	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	6p21.33	MICB	rs34131062-?	NR	3E-10	(S_VLDL_TG)	0.07202289	NR unit increase	Illumina [609262]	N
604	chr6_mann_hap4	2583304	2583305	rs34131062	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	6p21.33	MICB	rs34131062-?	NR	1E-9	(VLDL_TG)	0.071520545	NR unit increase	Illumina [609262]	N
604	chr6_mann_hap4	2583304	2583305	rs34131062	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	6p21.33	MICB	rs34131062-?	NR	8E-9	(S_VLDL_TG)	0.07218766	NR unit increase	Illumina [609262]	N
604	chr6_mann_hap4	2583304	2583305	rs34131062	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	6p21.33	MICB	rs34131062-?	NR	1E-8	(VLDL_TG)	0.0707539	NR unit increase	Illumina [609262]	N
604	chr6_mann_hap4	2583361	2583362	rs2524096	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TXNDC15	5,352 Icelandic ancestry individuals	NA	6p21.33		rs2524096-T	0.3782	1E-49		0.267181	[0.23-0.3] unit decrease	Illumina [7506463] (imputed)	N
604	chr6_mann_hap4	2583461	2583462	rs1049281	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI in non-smokers	75,379 European ancestry women, 45,811 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	6p21.33	HLA-C	rs1049281-C	0.653	2E-8		0.027	[0.017-0.037] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
604	chr6_mann_hap4	2583461	2583462	rs1049281	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (joint analysis main effects and smoking interaction)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	6p21.33	HLA-C	rs1049281-C	0.652	2E-10				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
604	chr6_mann_hap4	2583461	2583462	rs1049281	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	6p21.33	HLA-C	rs1049281-C	0.652	1E-18		0.026	[0.02-0.032] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
604	chr6_mann_hap4	2583578	2583579	rs3207561	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.33		rs3207561-A	0.623	4E-27				Affymetrix [10369434] (imputed)	N
604	chr6_mann_hap4	2583580	2583581	rs3207555	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	6p21.33	HLA-C	rs3207555-A	0.34675	4E-12		0.017413307	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
604	chr6_mann_hap4	2583953	2583954	rs2894204	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	6p21.33	NA	rs2894204-T	0.6383	8E-25		0.0209	[0.017-0.025] unit increase	NR [~ 27400000] (imputed)	N
604	chr6_mann_hap4	2583953	2583954	rs2894204	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	6p21.33	NR	rs2894204-T	0.6383	8E-25		0.0209	[0.017-0.025] unit increase	NR [~ 27400000] (imputed)	N
604	chr6_mann_hap4	2584594	2584595	rs17886880	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs17886880-A	NR	1E-10		0.0204376	[0.014-0.027] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_mann_hap4	2584594	2584595	rs17886880	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-C	rs17886880-A	NR	1E-9		0.0194517	[0.013-0.026] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_mann_hap4	2584594	2584595	rs17886880	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs17886880-A	NR	2E-11		0.0214244	[0.015-0.028] unit decrease	Affymetrix [321016] (imputed)	N
604	chr6_mann_hap4	2584667	2584668	rs1050118	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	121,047 East Asian ancestry individuals	NA	6p21.33	NR	rs1050118-C	0.759821	5E-17		0.039726	[0.03-0.049] SD units decrease	Affymetrix, Illumina [16286195] (imputed)	N
604	chr6_mann_hap4	2584749	2584750	rs34794906	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-C	rs34794906-C	NR	7E-15		0.027207	[0.02-0.034] unit decrease	Affymetrix [323123] (imputed)	N
604	chr6_mann_hap4	2584749	2584750	rs34794906	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	6p21.33	HLA-C	rs34794906-C	0.2643	2E-23		0.04089973	[0.033-0.049] unit increase	Affymetrix [~ 2500000] (imputed)	N
604	chr6_mann_hap4	2585206	2585207	rs9264638	23417110	Tin A	2013-02-16	Hum Genet	Genome-wide association study identified the human leukocyte antigen region as a novel locus for plasma beta-2 microglobulin.	Beta-2 microglubulin plasma levels	6,728 European ancestry individuals		6p21.33	HLA-C	rs9264638-A	0.58	2E-23		0.04	[0.032-0.048] unit decrease	Affymetrix [2500000] (imputed)	N
604	chr6_mann_hap4	2585210	2585211	rs9264639	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	6p21.33	HLA-C	rs9264639-C	0.8898	2E-8		5.601	NR z score decrease	Illumina [26237160] (imputed)	N
604	chr6_mann_hap4	2585378	2585379	rs9264642	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-C	rs9264642-T	NR	7E-14		0.0238148	[0.018-0.03] unit decrease	Affymetrix [323858] (imputed)	N
604	chr6_mann_hap4	2585378	2585379	rs9264642	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HLA-C	rs9264642-T	NR	4E-12		0.0220978	[0.016-0.028] unit decrease	Affymetrix [127266] (imputed)	N
604	chr6_mann_hap4	2585937	2585938	rs1065406	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	6p21.33	HLA-C	rs1065406-T	0.026891	1E-10		0.048755113	[0.034-0.064] unit increase	Affymetrix [93095623] (imputed)	N
604	chr6_mann_hap4	2585945	2585946	rs2308575	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	6p21.33		rs2308575-T	NR	1E-224		0.0839	[0.079-0.089] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
604	chr6_mann_hap4	2585945	2585946	rs2308575	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	White blood cell count	8,825 African American individuals, 18,251 Hispanic/Latino individuals, 543 Asian ancestry individuals, 606 Native American ancestry individuals, 383 individuals	NA	6p21.33	NR	rs2308575-?	NR	9E-7		0.01349677	[0.0081-0.0189] unit increase	Illumina [30613845] (imputed)	N
604	chr6_mann_hap4	2586116	2586117	rs9264664	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Adrenomedullin levels	21,758 European ancestry individuals	9,173 individuals	6p21.33		rs9264664-T	0.67	2E-12		0.0668	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
604	chr6_mann_hap4	2586180	2586181	rs9264666	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs9264666-G	NR	6E-11		0.0183937	[0.013-0.024] unit increase	Affymetrix [321016] (imputed)	N
604	chr6_mann_hap4	2586189	2586190	rs17879195	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-C	rs17879195-T	NR	3E-10		0.0253256	[0.017-0.033] unit decrease	Affymetrix [323123] (imputed)	N
604	chr6_mann_hap4	2586314	2586315	rs41543814	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-C	rs41543814-T	NR	7E-11		0.0205232	[0.014-0.027] unit increase	Affymetrix [323858] (imputed)	N
604	chr6_mann_hap4	2586314	2586315	rs41543814	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HLA-C	rs41543814-T	NR	7E-10		0.0194382	[0.013-0.026] unit increase	Affymetrix [127266] (imputed)	N
604	chr6_mann_hap4	2586333	2586334	rs28626310	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs28626310-G	NR	4E-12		0.0245555	[0.018-0.031] unit decrease	Affymetrix [319769] (imputed)	N
604	chr6_mann_hap4	2586333	2586334	rs28626310	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-C	rs28626310-G	NR	3E-11		0.0236059	[0.017-0.031] unit decrease	Affymetrix [319769] (imputed)	N
604	chr6_mann_hap4	2586333	2586334	rs28626310	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HLA-C	rs28626310-G	NR	3E-10		0.0226589	[0.016-0.03] unit decrease	Affymetrix [321169] (imputed)	N
604	chr6_mann_hap4	2586390	2586391	rs1050414	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Psoriasis vulgaris	206 East Asian ancestry cases, 172,289 East Asian ancestry controls	NA	6p21.33		rs1050414-G	0.029861158	6E-14		3.1940312	[2.36-4.03] unit increase	Illumina [13429050] (imputed)	N
604	chr6_mann_hap4	2586402	2586403	rs1050420	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs1050420-T	NR	1E-11		0.0196904	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_mann_hap4	2586402	2586403	rs1050420	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-C	rs1050420-T	NR	1E-10		0.0188138	[0.013-0.025] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_mann_hap4	2586402	2586403	rs1050420	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs1050420-T	NR	2E-8		0.016265	[0.011-0.022] unit decrease	Affymetrix [321016] (imputed)	N
604	chr6_mann_hap4	2586402	2586403	rs1050420	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8 on CD8+ T cell	3,113 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs1050420-T	0.57866	2E-15		0.2317	[0.18-0.29] unit increase	Illumina [18030777] (imputed)	N
604	chr6_mann_hap4	2586402	2586403	rs1050420	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	6p21.33	HLA-C	rs1050420-T	0.371904	2E-15		0.020388147	[0.015-0.025] unit increase	Affymetrix [93095623] (imputed)	N
604	chr6_mann_hap4	2586461	2586462	rs707911	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-C	rs707911-A	NR	1E-10		0.0201335	[0.014-0.026] unit decrease	Affymetrix [323858] (imputed)	N
604	chr6_mann_hap4	2586461	2586462	rs707911	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HLA-C	rs707911-A	NR	2E-9		0.0186456	[0.013-0.025] unit decrease	Affymetrix [127266] (imputed)	N
604	chr6_mann_hap4	2586461	2586462	rs707911	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-C	rs707911-A	NR	4E-19		0.027395	[0.021-0.033] unit increase	Affymetrix [323123] (imputed)	N
604	chr6_mann_hap4	2586469	2586470	rs1050437	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gastric cancer	7,921 East Asian ancestry cases, 159,201 East Asian ancestry controls	NA	6p21.33		rs1050437-T	0.367701676	2E-10		0.1113395	[0.077-0.145] unit decrease	Illumina [13428249] (imputed)	N
604	chr6_mann_hap4	2586705	2586706	rs2308527	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-C	rs2308527-G	NR	1E-10		0.0203077	[0.014-0.027] unit decrease	Affymetrix [323858] (imputed)	N
604	chr6_mann_hap4	2586705	2586706	rs2308527	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HLA-C	rs2308527-G	NR	5E-9		0.0185054	[0.012-0.025] unit decrease	Affymetrix [127266] (imputed)	N
604	chr6_mann_hap4	2586928	2586929	rs2524094	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GZMA	5,361 Icelandic ancestry individuals	NA	6p21.33		rs2524094-C	0.3792	4E-35		0.236005	[0.2-0.27] unit decrease	Illumina [7506463] (imputed)	N
604	chr6_mann_hap4	2586928	2586929	rs2524094	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-C	rs2524094-C	NR	6E-17		0.0258625	[0.02-0.032] unit increase	Affymetrix [323123] (imputed)	N
604	chr6_mann_hap4	2586947	2586948	rs2844622	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs2844622-A	NR	4E-23		0.0292963	[0.024-0.035] unit increase	Affymetrix [321016] (imputed)	N
604	chr6_mann_hap4	2587310	2587311	rs2074488	23144326	Kim DK	2012-11-09	Am J Respir Crit Care Med	Genome-wide association analysis of blood biomarkers in chronic obstructive pulmonary disease.	Chronic obstructive pulmonary disease-related biomarkers	Up to 1,951 European ancestry smokers	NA	6p21.33	HLA-C	rs2074488-T	0.13	2E-10	(SP-D)			Illumina [588352]	N
604	chr6_mann_hap4	2587358	2587359	rs9357121	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.33		rs9357121-T	0.966	9E-15				Affymetrix [10369434] (imputed)	N
604	chr6_mann_hap4	2587358	2587359	rs9357121	26582766	Lu X	2015-11-18	Circ Cardiovasc Genet	Genetic Susceptibility to Lipid Levels and Lipid Change Over Time and Risk of Incident Hyperlipidemia in Chinese Populations.	LDL cholesterol	8,344 Han Chinese ancestry individuals	14,739 Han Chinese ancestry individuals	6p21.33	HLA-C	rs9357121-T	0.85	3E-10		1.842	[1.25-2.43] unit increase	Affymetrix, Illumina [2573667] (imputed)	N
604	chr6_mann_hap4	2587358	2587359	rs9357121	26582766	Lu X	2015-11-18	Circ Cardiovasc Genet	Genetic Susceptibility to Lipid Levels and Lipid Change Over Time and Risk of Incident Hyperlipidemia in Chinese Populations.	Cholesterol, total	8,344 Han Chinese ancestry individuals	14,739 Han Chinese ancestry individuals	6p21.33	HLA-C	rs9357121-T	0.85	2E-10		2.062	[1.42-2.71] unit increase	Affymetrix, Illumina [2573667] (imputed)	N
604	chr6_mann_hap4	2587514	2587515	rs4361609	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	6p21.33	HLA-C, USP8P1	rs4361609-C	0.120687	1E-47		0.05005804	[0.043-0.057] unit decrease	Affymetrix [93095623] (imputed)	N
604	chr6_mann_hap4	2587591	2587592	rs2249741	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs2249741-A	NR	1E-14		0.0216601	[0.016-0.027] unit decrease	Affymetrix [319769] (imputed)	N
604	chr6_mann_hap4	2587591	2587592	rs2249741	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-C	rs2249741-A	NR	3E-13		0.0205289	[0.015-0.026] unit decrease	Affymetrix [319769] (imputed)	N
604	chr6_mann_hap4	2587591	2587592	rs2249741	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs2249741-A	NR	1E-11		0.0190915	[0.014-0.025] unit increase	Affymetrix [321016] (imputed)	N
604	chr6_mann_hap4	2587591	2587592	rs2249741	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HLA-C	rs2249741-A	NR	4E-13		0.0206435	[0.015-0.026] unit decrease	Affymetrix [321169] (imputed)	N
604	chr6_mann_hap4	2587600	2587601	rs2249742	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large LDL	115,082 European ancestry individuals	NA	6p21.33		rs2249742-C	0.555622	3E-9		0.0244495	[0.016-0.033] unit decrease	NR [11722792] (imputed)	N
604	chr6_mann_hap4	2587600	2587601	rs2249742	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in LDL	115,082 European ancestry individuals	NA	6p21.33		rs2249742-C	0.555622	2E-9		0.0247133	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
604	chr6_mann_hap4	2587600	2587601	rs2249742	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large LDL	115,082 European ancestry individuals	NA	6p21.33		rs2249742-C	0.555622	2E-8		0.0230779	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
604	chr6_mann_hap4	2587600	2587601	rs2249742	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in LDL	115,082 European ancestry individuals	NA	6p21.33		rs2249742-C	0.555622	2E-8		0.0234686	[0.015-0.032] unit decrease	NR [11722792] (imputed)	N
604	chr6_mann_hap4	2587600	2587601	rs2249742	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	LDL cholesterol levels	115,082 European ancestry individuals	NA	6p21.33		rs2249742-C	0.555622	3E-9		0.0245814	[0.016-0.033] unit decrease	NR [11722792] (imputed)	N
604	chr6_mann_hap4	2587600	2587601	rs2249742	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large LDL	115,082 European ancestry individuals	NA	6p21.33		rs2249742-C	0.555622	8E-10		0.025273	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
604	chr6_mann_hap4	2587600	2587601	rs2249742	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large LDL	115,082 European ancestry individuals	NA	6p21.33		rs2249742-C	0.555622	4E-9		0.0242248	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
604	chr6_mann_hap4	2587600	2587601	rs2249742	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs2249742-C	0.559	5E-180				Affymetrix [10369434] (imputed)	N
604	chr6_mann_hap4	2587600	2587601	rs2249742	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p21.33	HLA-C, USP8P1	rs2249742-T	0.441322	3E-27		0.03629834	[0.03-0.043] unit increase	Affymetrix [93095623] (imputed)	N
604	chr6_mann_hap4	2587600	2587601	rs2249742	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	6p21.33	HLA-C, USP8P1	rs2249742-T	0.441347	6E-25		0.026632145	[0.022-0.032] unit increase	Affymetrix [93095623] (imputed)	N
604	chr6_mann_hap4	2587600	2587601	rs2249742	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.33	HLA-C, USP8P1	rs2249742-T	0.441398	2E-70		0.049990416	[0.044-0.056] unit increase	Affymetrix [93095623] (imputed)	N
604	chr6_mann_hap4	2587600	2587601	rs2249742	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	6p21.33	NR	rs2249742-T	0.448909	4E-405		0.079592	[0.076-0.083] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
604	chr6_mann_hap4	2587600	2587601	rs2249742	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p21.33	NR	rs2249742-T	0.465758	6E-421				Affymetrix, Illumina [23472807] (imputed)	N
604	chr6_mann_hap4	2587600	2587601	rs2249742	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	White blood cell count	8,825 African American individuals, 18,251 Hispanic/Latino individuals, 543 Asian ancestry individuals, 606 Native American ancestry individuals, 383 individuals	NA	6p21.33	NR	rs2249742-?	NR	2E-7		0.01238585	[0.0077-0.0171] unit increase	Illumina [30613845] (imputed)	N
604	chr6_mann_hap4	2587600	2587601	rs2249742	28158719	Jain D	2017-02-01	Hum Mol Genet	Genome-wide association of white blood cell counts in Hispanic/Latino Americans: the Hispanic Community Health Study/Study of Latinos.	White blood cell count (lymphocyte)	up to 11,809 Hispanic/Latino American individuals	up to 7,200 Hispanic/Latino American individuals	6p21.33	HLA-C	rs2249742-C	0.486	4E-8		0.0219	[0.014-0.03] unit decrease	Illumina [27887661] (imputed)	N
604	chr6_mann_hap4	2587600	2587601	rs2249742	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	6p21.33	HLA-C, USP8P1	rs2249742-T	0.4405	5E-71		0.06448932	[0.057-0.072] unit increase	Affymetrix [~ 2500000] (imputed)	N
604	chr6_mann_hap4	2587750	2587751	rs9264681	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs9264681-C	NR	1E-13		0.0225581	[0.017-0.029] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_mann_hap4	2587750	2587751	rs9264681	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-C	rs9264681-C	NR	3E-13		0.0223033	[0.016-0.028] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_mann_hap4	2587750	2587751	rs9264681	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-C	rs9264681-C	NR	2E-11		0.0221737	[0.016-0.029] unit decrease	Affymetrix [323123] (imputed)	N
604	chr6_mann_hap4	2587750	2587751	rs9264681	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HLA-C	rs9264681-C	NR	4E-10		0.0192801	[0.013-0.025] unit increase	Affymetrix [321169] (imputed)	N
604	chr6_mann_hap4	2587911	2587912	rs5010528	28062682	Carr DF	2017-01-05	J Antimicrob Chemother	Genome-wide association study of nevirapine hypersensitivity in a sub-Saharan African HIV-infected population.	Nevirapine-induced hypersensitivity in HIV (Stevens-Johnson syndrome or toxic epidermal necrosis)	51 Sub-saharan African ancestry cases, 182 Sub-saharan African ancestry controls	11 Sub-Saharan African ancestry cases, 27 African ancestry cases, 60 Sub-Saharan African ancestry controls, 8 African ancestry controls	6p21.33	HLA-C	rs5010528-G	0.14	8E-8		4.84	[2.71-8.61]	Illumina [14218511] (imputed)	N
604	chr6_mann_hap4	2587971	2587972	rs2523599	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs2523599-C	NR	1E-21		0.0275701	[0.022-0.033] unit decrease	Affymetrix [319769] (imputed)	N
604	chr6_mann_hap4	2587971	2587972	rs2523599	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-C	rs2523599-C	NR	7E-20		0.0263436	[0.021-0.032] unit decrease	Affymetrix [319769] (imputed)	N
604	chr6_mann_hap4	2587971	2587972	rs2523599	33608531	Wu Y	2021-02-19	Nat Commun	GWAS of peptic ulcer disease implicates Helicobacter pylori infection, other gastrointestinal disorders and depression.	Irritable bowel syndrome	28,518 European ancestry cases, 426,803 European ancestry controls	NA	6p21.33	HLA-C	rs2523599-C	0.39	4E-8		0.95		NR [8546065] (imputed)	N
604	chr6_mann_hap4	2587988	2587989	rs13191343	20953186	Huffmeier U	2010-10-17	Nat Genet	Common variants at TRAF3IP2 are associated with susceptibility to psoriatic arthritis and psoriasis.	Psoriatic arthritis	572 European ancestry cases, 888 European ancestry controls	Up to 1,761 European ancestry cases, 3,727 European ancestry controls	6p21.33	HLA-C	rs13191343-T	0.13	2E-72		2.37	[2.16-2.61]	Affymetrix [1585307] (imputed)	N
604	chr6_mann_hap4	2588061	2588062	rs6900444	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs6900444-T	NR	4E-11		0.0186301	[0.013-0.024] unit decrease	Affymetrix [321016] (imputed)	N
604	chr6_mann_hap4	2588061	2588062	rs6900444	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-C	rs6900444-T	NR	2E-15		0.0243915	[0.018-0.03] unit decrease	Affymetrix [323123] (imputed)	N
604	chr6_mann_hap4	2588061	2588062	rs6900444	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	6p21.33	RNU6-283P	rs6900444-?	NR	1E-38		0.0342	[0.029-0.039] unit increase	Affymetrix [5701386] (imputed)	N
604	chr6_mann_hap4	2588149	2588150	rs6900323	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs6900323-G	NR	3E-10		0.022084	[0.015-0.029] unit decrease	Affymetrix [319769] (imputed)	N
604	chr6_mann_hap4	2588149	2588150	rs6900323	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-C	rs6900323-G	NR	2E-9		0.0211782	[0.014-0.028] unit decrease	Affymetrix [319769] (imputed)	N
604	chr6_mann_hap4	2588149	2588150	rs6900323	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-C	rs6900323-G	NR	2E-8		0.0215495	[0.014-0.029] unit increase	Affymetrix [323123] (imputed)	N
604	chr6_mann_hap4	2588518	2588519	rs2524084	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	151,807 East Asian ancestry individuals	NA	6p21.33	NR	rs2524084-A	0.427051	1E-53		0.056526	[0.049-0.064] SD units increase	Affymetrix, Illumina [16710636] (imputed)	N
604	chr6_mann_hap4	2588518	2588519	rs2524084	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	88,929 East Asian ancestry individuals	NA	6p21.33	NR	rs2524084-A	0.42316	2E-35		0.059309	[0.05-0.069] SD units increase	Affymetrix, Illumina [16289044] (imputed)	N
604	chr6_mann_hap4	2588518	2588519	rs2524084	31375628	Tengvall K	2019-08-02	Proc Natl Acad Sci U S A	Molecular mimicry between Anoctamin 2 and Epstein-Barr virus nuclear antigen 1 associates with multiple sclerosis risk.	Anti-anoctamin 2 antibody levels	11,936 European ancestry individuals	NA	6p21.33	NR	rs2524084-G	NR	3E-6		0.048	[0.024-0.072] unit decrease	Illumina [615763]	N
604	chr6_mann_hap4	2588640	2588641	rs2524082	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	6p21.33	HLA-C, USP8P1	rs2524082-T	0.56	4E-65		0.06130488	[0.054-0.068] unit decrease	Affymetrix [~ 2500000] (imputed)	N
604	chr6_mann_hap4	2588935	2588936	rs7764413	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	USP8P1	rs7764413-C	NR	8E-11		0.0182807	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_mann_hap4	2588935	2588936	rs7764413	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	USP8P1	rs7764413-C	NR	1E-9		0.0172073	[0.012-0.023] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_mann_hap4	2588935	2588936	rs7764413	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p21.33	NR	rs7764413-C	0.463	2E-6	(IFNalpha_STAT1_of_CD8p_T)			Illumina [5084123] (imputed)	N
604	chr6_mann_hap4	2588936	2588937	rs2524081	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p21.33	HLA-C	rs2524081-C		2E-19		0.03	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
604	chr6_mann_hap4	2588936	2588937	rs2524081	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	6p21.33	HLA-C, USP8P1	rs2524081-C	0.1374	5E-11		0.03378154	[0.024-0.044] unit decrease	Affymetrix [~ 2500000] (imputed)	N
604	chr6_mann_hap4	2589004	2589005	rs2844620	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	USP8P1	rs2844620-C	NR	4E-19		0.0254568	[0.02-0.031] unit decrease	Affymetrix [319769] (imputed)	N
604	chr6_mann_hap4	2589004	2589005	rs2844620	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	USP8P1	rs2844620-C	NR	4E-11		0.0208679	[0.015-0.027] unit decrease	Affymetrix [323858] (imputed)	N
604	chr6_mann_hap4	2589004	2589005	rs2844620	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	USP8P1	rs2844620-C	NR	3E-18		0.0247749	[0.019-0.03] unit decrease	Affymetrix [319769] (imputed)	N
604	chr6_mann_hap4	2589004	2589005	rs2844620	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	USP8P1	rs2844620-C	NR	5E-10		0.0196514	[0.013-0.026] unit decrease	Affymetrix [127266] (imputed)	N
604	chr6_mann_hap4	2589004	2589005	rs2844620	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	USP8P1	rs2844620-C	NR	9E-17		0.0239546	[0.018-0.03] unit decrease	Affymetrix [321169] (imputed)	N
604	chr6_mann_hap4	2589027	2589028	rs2524079	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	6p21.33		rs2524079-A	NR	9E-270		0.0717	[0.068-0.076] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
604	chr6_mann_hap4	2589027	2589028	rs2524079	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	82,810 East Asian ancestry individuals	NA	6p21.33		rs2524079-A	0.271529	6E-32		0.0612891	[0.051-0.072] unit increase	Illumina [13467171] (imputed)	N
604	chr6_mann_hap4	2589027	2589028	rs2524079	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	6p21.33		rs2524079-A	NR	3E-162		0.0594	[0.055-0.064] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
604	chr6_mann_hap4	2589027	2589028	rs2524079	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.33		rs2524079-G	0.583	4E-109				Affymetrix [10369434] (imputed)	N
604	chr6_mann_hap4	2589027	2589028	rs2524079	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p21.33		rs2524079-G	0.583	2E-76				Affymetrix [10369434] (imputed)	N
604	chr6_mann_hap4	2589027	2589028	rs2524079	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (lymphocyte)	21,347 Hispanic or Latin American individuals	NA	6p21.33		rs2524079-A	0.5566	1E-8		0.0648	[0.042-0.087] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
604	chr6_mann_hap4	2589027	2589028	rs2524079	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	21,347 Hispanic or Latin American individuals	NA	6p21.33		rs2524079-A	0.5537	3E-10		0.0627	[0.043-0.082] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
604	chr6_mann_hap4	2589027	2589028	rs2524079	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	USP8P1	rs2524079-A	NR	6E-11		0.0186395	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_mann_hap4	2589027	2589028	rs2524079	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	USP8P1	rs2524079-A	NR	4E-10		0.0178594	[0.012-0.023] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_mann_hap4	2589027	2589028	rs2524079	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	USP8P1	rs2524079-A	NR	7E-9		0.0164819	[0.011-0.022] unit decrease	Affymetrix [321016] (imputed)	N
604	chr6_mann_hap4	2589027	2589028	rs2524079	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	USP8P1	rs2524079-A	NR	1E-9		0.0175752	[0.012-0.023] unit increase	Affymetrix [321169] (imputed)	N
604	chr6_mann_hap4	2589027	2589028	rs2524079	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	6p21.33	HLA-C, USP8P1	rs2524079-A	0.417269	1E-31		0.027049404	[0.023-0.032] unit increase	Affymetrix [93095623] (imputed)	N
604	chr6_mann_hap4	2589027	2589028	rs2524079	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p21.33	NR	rs2524079-A	0.398304	1E-51				Affymetrix, Illumina [19905671] (imputed)	N
604	chr6_mann_hap4	2589027	2589028	rs2524079	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	6p21.33	NR	rs2524079-A	0.419059	5E-51		0.031209	[0.027-0.035] SD unit increase	Affymetrix, Illumina [50036608] (imputed)	N
604	chr6_mann_hap4	2589027	2589028	rs2524079	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	White blood cell count	8,825 African American individuals, 18,251 Hispanic/Latino individuals, 543 Asian ancestry individuals, 606 Native American ancestry individuals, 383 individuals	NA	6p21.33	NR	rs2524079-?	NR	1E-9		0.01475699	[0.01-0.019] unit increase	Illumina [30613845] (imputed)	N
604	chr6_mann_hap4	2589027	2589028	rs2524079	28158719	Jain D	2017-02-01	Hum Mol Genet	Genome-wide association of white blood cell counts in Hispanic/Latino Americans: the Hispanic Community Health Study/Study of Latinos.	White blood cell count (lymphocyte)	up to 11,809 Hispanic/Latino American individuals	up to 7,200 Hispanic/Latino American individuals	6p21.33	NR	rs2524079-A	0.56	2E-8		0.016	[0.01-0.022] unit increase	Illumina [27887661] (imputed)	N
604	chr6_mann_hap4	2589027	2589028	rs2524079	28158719	Jain D	2017-02-01	Hum Mol Genet	Genome-wide association of white blood cell counts in Hispanic/Latino Americans: the Hispanic Community Health Study/Study of Latinos.	White blood cell count	up to 11,809 Hispanic/Latino American individuals	up to 7,200 Hispanic/Latino American individuals	6p21.33	HLA-C	rs2524079-G	0.556	2E-8		0.213	[0.21-0.22] unit decrease	Illumina [27887661] (imputed)	N
604	chr6_mann_hap4	2589027	2589028	rs2524079	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	6p21.33	HLA-C, USP8P1	rs2524079-A	0.4171	2E-126		0.08687249	[0.08-0.094] unit increase	Affymetrix [~ 2500000] (imputed)	N
604	chr6_mann_hap4	2589027	2589028	rs2524079	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	6p21.33	HLA-C, USP8P1	rs2524079-A	0.4168	6E-68		0.06325533	[0.056-0.07] unit increase	Affymetrix [~ 2500000] (imputed)	N
604	chr6_mann_hap4	2589027	2589028	rs2524079	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	6p21.33	HLA-C, USP8P1	rs2524079-A	0.4168	2E-68		0.06352314	[0.056-0.071] unit increase	Affymetrix [~ 2500000] (imputed)	N
604	chr6_mann_hap4	2589027	2589028	rs2524079	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	6p21.33	HLA-C, USP8P1	rs2524079-A	0.4168	1E-67		0.0630379	[0.056-0.07] unit increase	Affymetrix [~ 2500000] (imputed)	N
604	chr6_mann_hap4	2589027	2589028	rs2524079	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	6p21.33	HLA-C, USP8P1	rs2524079-A	0.4168	9E-69		0.06375719	[0.057-0.071] unit increase	Affymetrix [~ 2500000] (imputed)	N
604	chr6_mann_hap4	2589027	2589028	rs2524079	21738480	Nalls MA	2011-07-01	PLoS Genet	Multiple loci are associated with white blood cell phenotypes.	White blood cell count	19,509 European ancestry individuals	11,823 European ancestry individuals	6p21.33	PSORS1C3, HCG27, HLA-C, HLA-B	rs2524079-A		1E-11	(Lymphocytes)	0.0148	[0.010-0.019] unit increase	Affymetrix, Illumina [> 2400000] (imputed)	N
604	chr6_mann_hap4	2589044	2589045	rs12111032	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p21.33	HLA-C, HLA-B	rs12111032-G	0.24	1E-9	(EA)	2.32	[1.76-3.06]	Illumina [up to 547389]	N
604	chr6_mann_hap4	2589076	2589077	rs2844619	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	USP8P1	rs2844619-C	NR	4E-24		0.0293712	[0.024-0.035] unit decrease	Affymetrix [319769] (imputed)	N
604	chr6_mann_hap4	2589076	2589077	rs2844619	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	USP8P1	rs2844619-C	NR	8E-22		0.0278547	[0.022-0.034] unit decrease	Affymetrix [319769] (imputed)	N
604	chr6_mann_hap4	2589076	2589077	rs2844619	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	USP8P1	rs2844619-C	NR	7E-20		0.0267656	[0.021-0.033] unit decrease	Affymetrix [321169] (imputed)	N
604	chr6_mann_hap4	2589362	2589363	rs35989257	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	USP8P1	rs35989257-T	NR	6E-9		0.0198497	[0.013-0.027] unit decrease	Affymetrix [323123] (imputed)	N
604	chr6_mann_hap4	2589362	2589363	rs35989257	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	USP8P1	rs35989257-T	NR	3E-9		0.0189318	[0.013-0.025] unit increase	Affymetrix [321169] (imputed)	N
604	chr6_mann_hap4	2589492	2589493	rs2844616	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	USP8P1	rs2844616-C	NR	5E-17		0.0240156	[0.018-0.03] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_mann_hap4	2589492	2589493	rs2844616	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	USP8P1	rs2844616-C	NR	3E-16		0.0233918	[0.018-0.029] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_mann_hap4	2589492	2589493	rs2844616	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	6p21.33	USP8P1	rs2844616-C	NR	2E-9		0.0194652	[0.013-0.026] unit decrease	Affymetrix [323858] (imputed)	N
604	chr6_mann_hap4	2589492	2589493	rs2844616	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	USP8P1	rs2844616-C	NR	7E-18		0.0267883	[0.021-0.033] unit decrease	Affymetrix [323123] (imputed)	N
604	chr6_mann_hap4	2589584	2589585	rs12199223	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CD8A	5,365 Icelandic ancestry individuals	NA	6p21.33		rs12199223-A	0.08655	2E-61		0.542037	[0.48-0.61] unit increase	Illumina [7506463] (imputed)	N
604	chr6_mann_hap4	2589584	2589585	rs12199223	30921485	Bejaoui Y	2019-03-28	Exp Dermatol	Genome-wide association study of psoriasis in an Egyptian population.	Psoriasis	215 Egyptian ancestry cases, 416 Egyptian ancestry controls	321 Egyptian ancestry cases, 253 Egyptian ancestry controls	6p21.33	HLA-C	rs12199223-?	NR	7E-18		2.49	[2.01-3.1]	Illumina [312245]	N
604	chr6_mann_hap4	2589615	2589616	rs3134745	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	6p21.33	HLA-C, USP8P1	rs3134745-T	0.325625	5E-10		0.01714023	[0.012-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
604	chr6_mann_hap4	2590200	2590201	rs9461680	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6p21.33		rs9461680-C	0.825202	3E-9		0.0310951	[0.021-0.041] unit increase	NR [11722792] (imputed)	N
604	chr6_mann_hap4	2590200	2590201	rs9461680	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	6p21.33		rs9461680-C	0.825202	9E-11		0.032856	[0.023-0.043] unit increase	NR [11722792] (imputed)	N
604	chr6_mann_hap4	2590212	2590213	rs9468911	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6p21.33		rs9468911-G	0.825215	1E-11		0.0349605	[0.025-0.045] unit decrease	NR [11722792] (imputed)	N
604	chr6_mann_hap4	2590212	2590213	rs9468911	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6p21.33		rs9468911-G	0.825215	8E-12		0.0354702	[0.025-0.046] unit increase	NR [11722792] (imputed)	N
604	chr6_mann_hap4	2590431	2590432	rs73390981	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	6p21.33		rs73390981-G	0.922	1E-33				Affymetrix [10369434] (imputed)	N
604	chr6_mann_hap4	2590431	2590432	rs73390981	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	6p21.33	USP8P1	rs73390981-A	0.078064	3E-29		0.049712982	[0.041-0.058] unit increase	Affymetrix [93095623] (imputed)	N
604	chr6_mann_hap4	2590468	2590469	rs13200569	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	6p21.33	USP8P1	rs13200569-A	0.285539	7E-13		0.01938597	[0.014-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
604	chr6_mann_hap4	2590681	2590682	rs4141168	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	6p21.33		rs4141168-A	0.786459	2E-8		0.0267074	[0.017-0.036] unit increase	NR [11722792] (imputed)	N
604	chr6_mann_hap4	2590683	2590684	rs2524076	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	USP8P1	rs2524076-G	NR	2E-14		0.0235806	[0.018-0.03] unit increase	Affymetrix [323123] (imputed)	N
604	chr6_mann_hap4	2590683	2590684	rs2524076	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	USP8P1	rs2524076-G	NR	4E-15		0.0225429	[0.017-0.028] unit decrease	Affymetrix [321169] (imputed)	N
604	chr6_mann_hap4	2590737	2590738	rs3130696	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	6p21.33	MICB	rs3130696-?	NR	5E-10	(XS_VLDL_TG)	0.06374044	NR unit decrease	Illumina [609262]	N
604	chr6_mann_hap4	2590737	2590738	rs3130696	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	6p21.33	MICB	rs3130696-?	NR	3E-6	(XS_VLDL_TG)	0.059096735	NR unit decrease	Illumina [609262]	N
604	chr6_mann_hap4	2590748	2590749	rs3094680	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	6p21.33	HLA	rs3094680-T	0.601913	1E-8		1.05	[1.03-1.06]	NR [8126035] (imputed)	N
604	chr6_mann_hap4	2591643	2591644	rs2524069	27327535	Laville V	2016-06-21	Pigment Cell Melanoma Res	A genome-wide association study in Caucasian women suggests the involvement of HLA genes in the severity of facial solar lentigines.	Severity of facial solar lentigines	502 French ancestry individuals		6p21.33	USP8P1, HLA-C	rs2524069-T	0.13	3E-7				Illumina [795063]	N
604	chr6_mann_hap4	2591814	2591815	rs6919908	26007630	Swaminathan B	2015-05-26	Nat Commun	Variants in ELL2 influencing immunoglobulin levels associate with multiple myeloma.	Multiple myeloma and monoclonal gammopathy	2,194 European ancestry multiple myeloma cases, 251 European ancestry monoclonal gammopathy cases, 294,390 European ancestry controls	586 European ancestry multiple myeloma cases, 2,111 European ancestry controls	6p21.33	PSORS1C2, HLA	rs6919908-T	0.23	6E-10		0.23	[NR] unit increase	Illumina [12100000] (imputed)	N
604	chr6_mann_hap4	2591814	2591815	rs6919908	26007630	Swaminathan B	2015-05-26	Nat Commun	Variants in ELL2 influencing immunoglobulin levels associate with multiple myeloma.	Multiple myeloma	2,194 European ancestry cases, 222,555 European ancestry controls	586 European ancestry cases, 2,111 European ancestry controls	6p21.33	PSORS1C2, HLA	rs6919908-T	0.23	4E-10		0.25	[NR] unit increase	Illumina [12100000] (imputed)	N
604	chr6_mann_hap4	2592664	2592665	rs2524067	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p21.33	HLA-C, HLA-B	rs2524067-G	0.353	1E-25				Illumina [118177]	N
604	chr6_mann_hap4	2593666	2593667	rs7383388	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6p21.33	RPL3P2	rs7383388-T	0.404081	1E-10		0.01745803	[0.012-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
604	chr6_mann_hap4	2594046	2594047	rs2853946	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	USP8P1	rs2853946-T	NR	2E-9		0.0200045	[0.014-0.026] unit decrease	Affymetrix [323123] (imputed)	N
604	chr6_mann_hap4	2594046	2594047	rs2853946	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	USP8P1	rs2853946-T	NR	5E-11		0.0201772	[0.014-0.026] unit increase	Affymetrix [321169] (imputed)	N
604	chr6_mann_hap4	2594046	2594047	rs2853946	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	119,629 East Asian ancestry individuals	NA	6p21.33	NR	rs2853946-A	0.728288	8E-12		0.03126	[0.022-0.04] SD units decrease	Affymetrix, Illumina [16286228] (imputed)	N
604	chr6_mann_hap4	2594046	2594047	rs2853946	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	White blood cell count	8,825 African American individuals, 18,251 Hispanic/Latino individuals, 543 Asian ancestry individuals, 606 Native American ancestry individuals, 383 individuals	NA	6p21.33	NR	rs2853946-?	NR	8E-7		0.0119414	[0.0072-0.0167] unit increase	Illumina [30613845] (imputed)	N
604	chr6_mann_hap4	2594046	2594047	rs2853946	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.33	USP8P1	rs2853946-A	0.6837	8E-12		0.0519	[0.037-0.067] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
604	chr6_mann_hap4	2594046	2594047	rs2853946	25096241	Keller MF	2014-08-05	Hum Mol Genet	Trans-ethnic meta-analysis of white blood cell phenotypes.	White blood cell count	16,843 Japanese ancestry individuals, 19,509 European ancestry individuals, 16,388 African American individuals	NA	6p21.33	HLA-B	rs2853946-A	0.717	8E-6	(Japanese)	0.013	[0.0071-0.0189] unit decrease	Illumina [NR] (imputed)	N
604	chr6_mann_hap4	2594046	2594047	rs2853946	25096241	Keller MF	2014-08-05	Hum Mol Genet	Trans-ethnic meta-analysis of white blood cell phenotypes.	White blood cell count	16,843 Japanese ancestry individuals, 19,509 European ancestry individuals, 16,388 African American individuals	NA	6p21.33	HLA-B	rs2853946-A	0.348	1E-8	(EA)	0.017	[0.011-0.023] unit decrease	Illumina [NR] (imputed)	N
604	chr6_mann_hap4	2594046	2594047	rs2853946	25096241	Keller MF	2014-08-05	Hum Mol Genet	Trans-ethnic meta-analysis of white blood cell phenotypes.	White blood cell count	16,843 Japanese ancestry individuals, 19,509 European ancestry individuals, 16,388 African American individuals	NA	6p21.33	HLA-B	rs2853946-?	NR	3E-14		0.0139	[0.010-0.017] unit decrease	Illumina [NR] (imputed)	N
604	chr6_mann_hap4	2594249	2594250	rs112262437	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.33	NR	rs112262437-C	0.994	2E-27	(conditional)	6.006	[5.68-6.33]	Illumina [11270530] (imputed)	N
604	chr6_mann_hap4	2594257	2594258	rs2844608	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	RPL3P2	rs2844608-T	NR	3E-19		0.0260453	[0.02-0.032] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_mann_hap4	2594257	2594258	rs2844608	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	RPL3P2	rs2844608-T	NR	2E-18		0.0254038	[0.02-0.031] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_mann_hap4	2594257	2594258	rs2844608	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4 on CD28+ CD4+ T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs2844608-T	0.45698	9E-10		0.1884	[0.13-0.25] unit increase	Illumina [17954496] (imputed)	N
604	chr6_mann_hap4	2594714	2594715	rs2853943	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	RPL3P2	rs2853943-C	NR	2E-12		0.0232178	[0.017-0.03] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_mann_hap4	2594714	2594715	rs2853943	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	RPL3P2	rs2853943-C	NR	3E-12		0.0229712	[0.017-0.029] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_mann_hap4	2595275	2595276	rs2844606	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	RPL3P2	rs2844606-G	NR	2E-9		0.0190067	[0.013-0.025] unit increase	Affymetrix [323858] (imputed)	N
604	chr6_mann_hap4	2595275	2595276	rs2844606	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	RPL3P2	rs2844606-G	NR	5E-8		0.017266	[0.011-0.023] unit increase	Affymetrix [127266] (imputed)	N
604	chr6_mann_hap4	2595275	2595276	rs2844606	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	RPL3P2	rs2844606-G	NR	1E-13		0.021298	[0.016-0.027] unit increase	Affymetrix [321169] (imputed)	N
604	chr6_mann_hap4	2595275	2595276	rs2844606	33204752	Butler-Laporte G	2020-09-24	Open Forum Infect Dis	Genetic Determinants of Antibody-Mediated Immune Responses to Infectious Diseases Agents: A Genome-Wide and HLA Association Study.	Anti-human herpes virus 6 IE1A IgG seropositivity	8,735 White British ancestry individuals	NA	6p21.33	RPL3P2	rs2844606-A	0.584	1E-8		0.1	unit decrease	NR [25472218] (imputed)	N
604	chr6_mann_hap4	2595275	2595276	rs2844606	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	6p21.33	RPL3P2	rs2844606-G	0.417187	3E-23		0.025892606	[0.021-0.031] unit increase	Affymetrix [93095623] (imputed)	N
604	chr6_mann_hap4	2595277	2595278	rs9264758	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p21.33	HLA-C	rs9264758-G	0.866	3E-7		0.082	[0.051-0.113] unit increase	Affymetrix, Illumina [7374092] (imputed)	N
604	chr6_mann_hap4	2595434	2595435	rs2844605	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	RPL3P2	rs2844605-C	NR	7E-16		0.0250208	[0.019-0.031] unit decrease	Affymetrix [323123] (imputed)	N
604	chr6_mann_hap4	2595521	2595522	rs9264759	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	93,063 East Asian ancestry individuals	NA	6p21.33		rs9264759-C	0.695944	2E-40		0.0639223	[0.055-0.073] unit decrease	Illumina [13470073] (imputed)	N
604	chr6_mann_hap4	2596072	2596073	rs2853941	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	RPL3P2	rs2853941-C	NR	1E-9		0.0174735	[0.012-0.023] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_mann_hap4	2596241	2596242	rs9264764	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	RPL3P2	rs9264764-C	NR	4E-9		0.0168291	[0.011-0.022] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_mann_hap4	2596436	2596437	rs7766089	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	RPL3P2	rs7766089-G	NR	5E-19		0.0281143	[0.022-0.034] unit increase	Affymetrix [323123] (imputed)	N
604	chr6_mann_hap4	2596436	2596437	rs7766089	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	RPL3P2	rs7766089-G	NR	2E-20		0.0271218	[0.021-0.033] unit decrease	Affymetrix [321169] (imputed)	N
604	chr6_mann_hap4	2596575	2596576	rs2853940	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gastric cancer	1,029 European ancestry cases, 475,087 European ancestry controls, 7,921 East Asian ancestry cases, 159,201 East Asian ancestry controls	NA	6p21.33		rs2853940-C	NR	8E-12		0.1087	[0.078-0.14] unit increase	Affymetrix, Illumina [25843697] (imputed)	N
604	chr6_mann_hap4	2596575	2596576	rs2853940	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	RPL3P2	rs2853940-C	NR	3E-17		0.0246751	[0.019-0.03] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_mann_hap4	2596575	2596576	rs2853940	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	RPL3P2	rs2853940-C	NR	4E-16		0.0237957	[0.018-0.03] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_mann_hap4	2597484	2597485	rs2853939	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	RPL3P2	rs2853939-T	NR	2E-28		0.033269	[0.027-0.039] unit increase	Affymetrix [323123] (imputed)	N
604	chr6_mann_hap4	2599237	2599238	rs2524054	20045101	Ferreira MA	2009-12-31	Am J Hum Genet	Quantitative trait loci for CD4:CD8 lymphocyte ratio are associated with risk of type 1 diabetes and HIV-1 immune control.	CD8-positive T-lymphocyte count	2,538 European ancestry twins from 1,089 families	988 individuals from 550 families	6p21.33	HLA-B	rs2524054-A	0.32	6E-21		0.37	[0.31-0.43] SD increase	Illumina [529721]	N
604	chr6_mann_hap4	2599237	2599238	rs2524054	20045101	Ferreira MA	2009-12-31	Am J Hum Genet	Quantitative trait loci for CD4:CD8 lymphocyte ratio are associated with risk of type 1 diabetes and HIV-1 immune control.	CD4:CD8 lymphocyte ratio	2,538 European ancestry twins from 1,089 families	988 individuals from 550 families	6p21.33	HLA-B	rs2524054-A	0.32	2E-28		0.37	[0.31-0.43] SD increase	Illumina [529721]	N
604	chr6_mann_hap4	2599766	2599767	rs12191877	26626624	Stuart PE	2015-11-28	Am J Hum Genet	Genome-wide Association Analysis of Psoriatic Arthritis and Cutaneous Psoriasis Reveals Differences in Their Genetic Architecture.	Psoriatic arthritis	1,946 European ancestry cases, 4,934 European ancestry controls	up to 2,883 European ancestry cases, up to 14,179 European ancestry controls		HLA-C, HLA-B, HLA, MHC	rs12191877-T	NR	2E-99		2.416	NR	Illumina [11532644] (imputed)	N
604	chr6_mann_hap4	2599766	2599767	rs12191877	20953188	Ellinghaus E	2010-10-17	Nat Genet	Genome-wide association study identifies a psoriasis susceptibility locus at TRAF3IP2.	Psoriasis	472 European ancestry cases, 1,146 European ancestry controls	2,668, European ancestry cases, 762 French Canadian founder population cases, 2,585 cases, 3,485 European ancestry controls, 994 French Canadian founder population controls, 2,412 controls		HLA-C	rs12191877-?	NR	4E-32		2.79	[2.35-3.33]	Illumina [2339118] (imputed)	N
604	chr6_mann_hap4	2599766	2599767	rs12191877	19169254	Nair RP	2009-01-25	Nat Genet	Genome-wide scan reveals association of psoriasis with IL-23 and NF-kappaB pathways.	Psoriasis	1,359 European ancestry cases, 1,400 European ancestry controls	5,048 European ancestry cases, 5,041 European ancestry controls		HLA-C	rs12191877-T	0.15	1E-100		2.64	[NR]	Perlegen [~ 2500000] (imputed)	N
604	chr6_mann_hap4	2600928	2600929	rs2853933	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	WASF5P	rs2853933-T	NR	5E-17		0.0264491	[0.02-0.033] unit decrease	Affymetrix [323858] (imputed)	N
604	chr6_mann_hap4	2600928	2600929	rs2853933	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	WASF5P	rs2853933-T	NR	5E-15		0.0246973	[0.019-0.031] unit decrease	Affymetrix [127266] (imputed)	N
604	chr6_mann_hap4	2601847	2601848	rs13214872	33385400	Patrick MT	2020-12-29	J Invest Dermatol	Causal relationship and shared genetic loci between psoriasis and type 2 diabetes through trans-disease meta-analysis.	Psoriasis or type 2 diabetes (trans-disease meta-analysis)	11,024 European ancestry psoriasis cases, 74,124 European ancestry diabetes cases, 840,342 European ancestry controls	NA		NR	rs13214872-G	NR	2E-302		1.67	NR	NR [8016731] (imputed)	N
604	chr6_mann_hap4	2602281	2602282	rs114598080	32421744	Gzara C	2020-05-18	PLoS Pathog	Family-based genome-wide association study of leprosy in Vietnam.	Leprosy	1,749 Vietnamese ancestry cases	1,181 Vietnamese ancestry cases, 688 Vietnamese ancestry controls	6p21.33	HLA-C	rs114598080-A	0.1	9E-13		1.47	[1.46-1.48]	Illumina [5607170] (imputed)	N
604	chr6_mann_hap4	2604347	2604348	rs2853928	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for VLDL particles	115,082 European ancestry individuals	NA	6p21.33		rs2853928-A	0.298678	8E-11		0.0272348	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
604	chr6_mann_hap4	2604347	2604348	rs2853928	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	HLA-C, WASF5P, XXbac-BPG248L24.13, HLA-B, XXbac-BPG248L24.12, USP8P1, RPL3P2, XXbac-BPG248L24.10, MIR6891	rs2853928-A	0.2253521	3E-12	(EA, Granzyme A)	0.3627	[0.26-0.46] unit decrease	Affymetrix [509946]	N
604	chr6_mann_hap4	2605229	2605230	rs2844594	34785669	Grosche S	2021-11-16	Nat Commun	Rare variant analysis in eczema identifies exonic variants in DUSP1, NOTCH4 and SLC9A4.	Eczema	20,016 European ancestry cases, 380,433 European ancestry controls	NA	6p21.33		rs2844594-A	0.1766	3E-14		1.12		Affymetrix, Illumina [9397031] (imputed)	N
604	chr6_mann_hap4	2605229	2605230	rs2844594	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HVEM on naive CD8+ T cell	1,247 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs2844594-A	0.38517	2E-10		0.276	[0.19-0.36] unit decrease	Illumina [16410374] (imputed)	N
604	chr6_mann_hap4	2605673	2605674	rs9468925	20526339	Quan C	2010-06-06	Nat Genet	Genome-wide association study for vitiligo identifies susceptibility loci at 6q27 and the MHC.	Vitiligo	1,117 Han Chinese ancestry cases, 1,429 Han Chinese ancestry controls	6,623 East Asian ancestry cases, 10,740 East Asian ancestry controls	6p21.33	HLA	rs9468925-?	0.617	2E-33		1.35	[1.28-1.41]	Illumina [493909]	N
604	chr6_mann_hap4	2606403	2606404	rs2524163	27286809	Ligthart S	2016-06-10	BMC Genomics	Bivariate genome-wide association study identifies novel pleiotropic loci for lipids and inflammation.	C-reactive protein levels or triglyceride levels (pleiotropy)	65,000 individuals (C-reactive protein), 96,598 individuals (triglycerides)	NA	6p21.33	HLA-C	rs2524163-T	NR	8E-10				NR [25015711] (imputed)	N
604	chr6_mann_hap4	2606952	2606953	rs115464798	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	6p21.33	WASF5P	rs115464798-A	0.056192	5E-21		0.049840536	[0.039-0.06] unit decrease	Affymetrix [93095623] (imputed)	N
604	chr6_mann_hap4	2609605	2609606	rs2524147	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs2524147-G	0.814	8E-65				Affymetrix [10369434] (imputed)	N
604	chr6_mann_hap4	2610334	2610335	rs2524143	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs2524143-C	0.736	2E-52	(Killer cell immunoglobulin-like receptor 2DS2, KIR2DS2.10428.1.3)	0.43	[0.37-0.49] unit decrease	Affymetrix [10572788] (imputed)	N
604	chr6_mann_hap4	2610346	2610347	rs2524142	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	6p21.33		rs2524142-C	0.299755	1E-8		0.0256476	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
604	chr6_mann_hap4	2610346	2610347	rs2524142	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	6p21.33		rs2524142-C	0.299755	8E-10		0.02748	[0.019-0.036] unit decrease	NR [11722792] (imputed)	N
604	chr6_mann_hap4	2610346	2610347	rs2524142	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs2524142-G	0.734	3E-22	(cAMP-specific 3',5'-cyclic phosphodiesterase 4D, PDE4D.5255.22.3)	0.28	[0.22-0.34] unit increase	Affymetrix [10572788] (imputed)	N
604	chr6_mann_hap4	2610575	2610576	rs2894207	27436580	Cui Q	2016-07-19	Hum Mol Genet	An extended genome-wide association study identifies novel susceptibility loci for nasopharyngeal carcinoma.	Nasopharyngeal carcinoma	1,583 Southern Chinese ancestry cases, 2,979 Southern Chinese ancestry controls	5,463 Southern Chinese ancestry cases, 5,591 Southern Chinese ancestry controls	6p21.33	NR	rs2894207-?	0.84	2E-19		1.96	[1.69-2.27]	Illumina [463250]	N
604	chr6_mann_hap4	2610575	2610576	rs2894207	20512145	Bei JX	2010-05-30	Nat Genet	A genome-wide association study of nasopharyngeal carcinoma identifies three new susceptibility loci.	Nasopharyngeal carcinoma	1,583 Chinese ancestry cases, 1,894 Chinese ancestry controls	3,507 Chinese ancestry cases, 3,063 Chinese ancestry controls, 284  Chinese ancestry trios	6p21.33	HLA-C, HLA-B	rs2894207-?	0.82	3E-33		1.64	[1.52-1.75]	Illumina [464328]	N
604	chr6_mann_hap4	2610625	2610626	rs114583506	33483693	Clements CC	2021-01-22	Mol Psychiatry	Genome-wide association study of patients with a severe major depressive episode treated with electroconvulsive therapy.	Major depressive episode treated with electroconvulsive therapy	2,725 European ancestry cases, 3,290 European ancestry controls	NA	6p21.33	HLA-C	rs114583506-?	NR	4E-8		0.5992	[0.42-0.78]	Illumina [NR] (imputed)	N
604	chr6_mann_hap4	2610625	2610626	rs114583506	33483693	Clements CC	2021-01-22	Mol Psychiatry	Genome-wide association study of patients with a severe major depressive episode treated with electroconvulsive therapy.	Major depressive disorder and major depressive episode treated with electroconvulsive therapy	1,796 European ancestry cases, 3,290 European ancestry controls	NA	6p21.33	HLA-C	rs114583506-?	NR	1E-7		0.5845	[0.39-0.78]	Illumina [NR] (imputed)	N
604	chr6_mann_hap4	2610963	2610964	rs2524139	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	XXbac-BPG248L24.13	rs2524139-C	0.734	2E-52	(Killer cell immunoglobulin-like receptor 2DS2, KIR2DS2.10428.1.3)	0.43	[0.37-0.49] unit decrease	Affymetrix [10572788] (imputed)	N
604	chr6_mann_hap4	2611222	2611223	rs9380237	32558222	Okamura K	2020-06-18	Pigment Cell Melanoma Res	Genome-wide association study identifies CDH13 as a susceptibility gene for rhododendrol-induced leukoderma.	Leukoderma in response to rhododendrol	147 Japanese ancestry cases, 112 Japanese ancestry controls	NA	6p21.33	HLA-B, HLA-C	rs9380237-?	NR	8E-6		3.5714285	[1.96-6.25]	Illumina [1057565]	N
604	chr6_mann_hap4	2611291	2611292	rs3094682	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	6p21.33	NR	rs3094682-C	0.8056	2E-23		0.0598	[0.048-0.072] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
604	chr6_mann_hap4	2611953	2611954	rs55745121	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	6p21.33	XXbac-BPG248L24.13	rs55745121-C	0.00771999999999995	2E-12		0.103537746	[0.075-0.132] unit increase	Affymetrix [93095623] (imputed)	N
604	chr6_mann_hap4	2611965	2611966	rs2524129	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2524129-C	0.298408	4E-18		0.0377033	[0.029-0.046] unit decrease	NR [11722792] (imputed)	N
604	chr6_mann_hap4	2611965	2611966	rs2524129	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small LDL	115,082 European ancestry individuals	NA	6p21.33		rs2524129-C	0.298408	2E-16		0.0359658	[0.027-0.045] unit decrease	NR [11722792] (imputed)	N
604	chr6_mann_hap4	2611965	2611966	rs2524129	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2524129-C	0.298408	5E-15		0.0341259	[0.026-0.043] unit decrease	NR [11722792] (imputed)	N
604	chr6_mann_hap4	2611965	2611966	rs2524129	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium LDL	115,082 European ancestry individuals	NA	6p21.33		rs2524129-C	0.298408	5E-17		0.036788	[0.028-0.045] unit decrease	NR [11722792] (imputed)	N
604	chr6_mann_hap4	2611965	2611966	rs2524129	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2524129-C	0.298408	3E-14		0.0327886	[0.024-0.041] unit decrease	NR [11722792] (imputed)	N
604	chr6_mann_hap4	2611965	2611966	rs2524129	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total triglycerides levels	115,082 European ancestry individuals	NA	6p21.33		rs2524129-C	0.298408	3E-15		0.0342705	[0.026-0.043] unit decrease	NR [11722792] (imputed)	N
604	chr6_mann_hap4	2611965	2611966	rs2524129	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2524129-C	0.298408	2E-11		0.0290519	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
604	chr6_mann_hap4	2612092	2612093	rs2246954	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.13	rs2246954-A	NR	2E-8		0.0159083	[0.01-0.021] unit decrease	Affymetrix [321114] (imputed)	N
604	chr6_mann_hap4	2612092	2612093	rs2246954	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.13	rs2246954-A	NR	1E-9		0.0195845	[0.013-0.026] unit increase	Affymetrix [323858] (imputed)	N
604	chr6_mann_hap4	2612320	2612321	rs2247056	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-3 fatty acid levels	115,006 European ancestry individuals	NA	6p21.33		rs2247056-T	0.296693	2E-16		0.0356403	[0.027-0.044] unit decrease	NR [11722792] (imputed)	N
604	chr6_mann_hap4	2612320	2612321	rs2247056	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2247056-T	0.296684	6E-12		0.0298649	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
604	chr6_mann_hap4	2612320	2612321	rs2247056	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.33	NR	rs2247056-T	NR	2E-14		0.034	unit decrease	Affymetrix [at least 7091467] (imputed)	N
604	chr6_mann_hap4	2612320	2612321	rs2247056	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.33	NR	rs2247056-T	0.249	1E-12	(EA)	0.034	unit decrease	Affymetrix [at least 7091467] (imputed)	N
604	chr6_mann_hap4	2612320	2612321	rs2247056	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.33	NR	rs2247056-T	NR	2E-18		0.043	unit decrease	Affymetrix [at least 7091467] (imputed)	N
604	chr6_mann_hap4	2612320	2612321	rs2247056	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.33	NR	rs2247056-T	0.249	2E-17	(EA)	0.045	unit decrease	Affymetrix [at least 7091467] (imputed)	N
604	chr6_mann_hap4	2612320	2612321	rs2247056	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.33	NR	rs2247056-T	NR	2E-8		0.028	unit decrease	Affymetrix [at least 7091467] (imputed)	N
604	chr6_mann_hap4	2612320	2612321	rs2247056	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.33	NR	rs2247056-T	0.249	6E-8	(EA)	0.029	unit decrease	Affymetrix [at least 7091467] (imputed)	N
604	chr6_mann_hap4	2612320	2612321	rs2247056	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	6p21.33	HLA-C, HLA-B	rs2247056-T	0.27	4E-12		1.18	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
604	chr6_mann_hap4	2612320	2612321	rs2247056	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	Triglycerides	96,598 European ancestry individuals	NA	6p21.33	HLA	rs2247056-T	0.25	2E-15		2.99	[2.17-3.81] mg/dL decrease	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
604	chr6_mann_hap4	2612567	2612568	rs2853923	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.13	rs2853923-G	NR	4E-8		0.0175506	[0.011-0.024] unit decrease	Affymetrix [323858] (imputed)	N
604	chr6_mann_hap4	2612871	2612872	rs17192526	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.13	rs17192526-C	NR	1E-9		0.0195758	[0.013-0.026] unit increase	Affymetrix [323858] (imputed)	N
604	chr6_mann_hap4	2612871	2612872	rs17192526	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.13	rs17192526-C	NR	8E-9		0.0185107	[0.012-0.025] unit increase	Affymetrix [127266] (imputed)	N
604	chr6_mann_hap4	2612871	2612872	rs17192526	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.13	rs17192526-C	NR	2E-18		0.0275913	[0.021-0.034] unit decrease	Affymetrix [323123] (imputed)	N
604	chr6_mann_hap4	2612920	2612921	rs4406273	26626624	Stuart PE	2015-11-28	Am J Hum Genet	Genome-wide Association Analysis of Psoriatic Arthritis and Cutaneous Psoriasis Reveals Differences in Their Genetic Architecture.	Psoriasis vulgaris	4,007 European ancestry cases, 4,934 European ancestry controls	up to 9,075 European ancestry cases, up to European ancestry 12,726 controls	6p21.33	HLA-B, HLA-C	rs4406273-A	NR	2E-312		3.38	NR	Illumina [up to 11532644] (imputed)	N
604	chr6_mann_hap4	2612920	2612921	rs4406273	23143594	Tsoi LC	2012-12-01	Nat Genet	Identification of 15 new psoriasis susceptibility loci highlights the role of innate immunity.	Psoriasis	10,588 European ancestry cases, 22,806 European ancestry controls	NA	6p21.33	HLA-B, HLA-C	rs4406273-A	0.092	5E-723		4.32		Illumina [111236] (imputed)	N
604	chr6_mann_hap4	2612947	2612948	rs2524095	31879980	German CA	2019-12-26	Genet Epidemiol	Ordered multinomial regression for genetic association analysis of ordinal phenotypes at Biobank scale.	Hypertension	30,822 British ancestry normal blood pressure individuals, 25,242 British ancestry elevated blood pressure individuals, 50,461 British ancestry stage 1 hypertension individuals, 75,286 British ancestry stage 2 hypertension individuals, 3,754 British ancestry hypertension crisis individuals	NA	6p21.33	LINC02571	rs2524095-?	NR	1E-9		0.03838402	NR unit increase	Affymetrix [464137]	N
604	chr6_mann_hap4	2614762	2614763	rs28367631	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	WASF5P, HLA-C, XXbac-BPG248L24.10, USP8P1, RPL3P2, XXbac-BPG248L24.13	rs28367631-T	0.3457286	1E-15	(EA, MHC class I polypeptide-related sequence A)	0.3635	[0.28-0.45] unit decrease	Affymetrix [509946]	N
604	chr6_mann_hap4	2614940	2614941	rs2524046	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.13	rs2524046-T	NR	1E-10		0.0223645	[0.016-0.029] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_mann_hap4	2614941	2614942	rs2524045	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.13	rs2524045-G	NR	7E-11		0.022607	[0.016-0.029] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_mann_hap4	2615468	2615469	rs28367657	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.13	rs28367657-A	NR	1E-12		0.0243391	[0.018-0.031] unit decrease	Affymetrix [323123] (imputed)	N
604	chr6_mann_hap4	2616000	2616001	rs9366778	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR		HLA-C	rs9366778-G	0.626619	3E-11		0.018043	[0.013-0.023] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
604	chr6_mann_hap4	2616313	2616314	rs2844592	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gastric polyp	6,155 European ancestry cases, 341,871 European ancestry controls, 1,337 East Asian ancestry cases, 158,249 East Asian ancestry controls	NA	6p21.33		rs2844592-G	NR	4E-8		0.0998	[0.064-0.135] unit increase	Affymetrix, Illumina [20456140] (imputed)	N
604	chr6_mann_hap4	2616516	2616517	rs114985235	26891255	Jung ES	2016-02-18	Inflamm Bowel Dis	HLA-C*01 is a Risk Factor for Crohn's Disease.	Crohn's disease	275 Korean ancestry cases, 2,369 Korean ancestry controls	242 Korean ancestry cases, 1,066 Korean ancestry controls	6p21.33	HLA-B, HLA-C	rs114985235-C	0.12	9E-23		2.25	[1.91-2.66]	Affymetrix [3387207] (imputed)	N
604	chr6_mann_hap4	2616769	2616770	rs12211087	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Depression	at least 5,919 European ancestry cases, at least 130,691 European ancestry controls	634,037 European ancestry cases, 1,308,690 European ancestry controls	6p21.33	XXbac, BPG248L24.13	rs12211087-T	0.09841	2E-6		0.018283794	[0.0097-0.0269] unit decrease	NR [9417325] (imputed)	N
604	chr6_mann_hap4	2617006	2617007	rs9468939	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.13	rs9468939-C	NR	6E-9		0.0177651	[0.012-0.024] unit decrease	Affymetrix [321016] (imputed)	N
604	chr6_mann_hap4	2617179	2617180	rs9264798	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p21.33		rs9264798-C	0.826	9E-36				Affymetrix [10369434] (imputed)	N
604	chr6_mann_hap4	2617227	2617228	rs9264801	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.33		rs9264801-C	0.826	5E-63				Affymetrix [10369434] (imputed)	N
604	chr6_mann_hap4	2617619	2617620	rs142628781	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.33		rs142628781-T	0.070905	3E-14		1.080437	[1.06-1.1]	Affymetrix, Illumina [9851866] (imputed)	N
604	chr6_mann_hap4	2617897	2617898	rs9264845	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs9264845-C	0.258	3E-16	(MHC class I polypeptide-related sequence B, MICB.5102.55.3)	0.26	[0.2-0.32] unit decrease	Affymetrix [10572788] (imputed)	N
604	chr6_mann_hap4	2618388	2618389	rs7750963	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large VLDL	115,082 European ancestry individuals	NA	6p21.33		rs7750963-A	0.298149	7E-13		0.0308157	[0.022-0.039] unit decrease	NR [11722792] (imputed)	N
604	chr6_mann_hap4	2618388	2618389	rs7750963	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large VLDL	115,082 European ancestry individuals	NA	6p21.33		rs7750963-A	0.298149	3E-12		0.0302555	[0.022-0.039] unit decrease	NR [11722792] (imputed)	N
604	chr6_mann_hap4	2618388	2618389	rs7750963	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6p21.33		rs7750963-A	0.298149	7E-9		0.0250346	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
604	chr6_mann_hap4	2618388	2618389	rs7750963	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs7750963-G	0.882	8E-43	(Killer cell immunoglobulin-like receptor 2DS2, KIR2DS2.10428.1.3)	0.59	[0.51-0.67] unit decrease	Affymetrix [10572788] (imputed)	N
604	chr6_mann_hap4	2618537	2618538	rs9461688	18464913	Melzer D	2008-05-09	PLoS Genet	A genome-wide association study identifies protein quantitative trait loci (pQTLs).	Protein quantitative trait loci	1,200 European ancestry individuals	up to 4,590 European ancestry individuals	6p21.33	HLA-C	rs9461688-?	0.31	4E-6	(IL18)			Illumina [496032]	N
604	chr6_mann_hap4	2618556	2618557	rs9264875	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Lectin-like oxidized LDL receptor 1 levels	21,758 European ancestry individuals	9,173 individuals	6p21.33		rs9264875-C	0.12	2E-9		0.092	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
604	chr6_mann_hap4	2619022	2619023	rs556990455	32534018	Liu X	2020-06-10	Brain Behav Immun	Genetic factors underlying the bidirectional relationship between autoimmune and mental disorders - findings from a Danish population-based study.	Autoimmune traits	1,383 Danish ancestry cases, 62,656 Danish ancestry controls	NA	6p21.33	NR	rs556990455-T	0.016	7E-11		2.23	[1.79-2.77]	NR [7721839] (imputed)	N
604	chr6_mann_hap4	2619082	2619083	rs6457374	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs6457374-T	0.753	2E-34	(MHC class I polypeptide-related sequence B, MICB.5102.55.3)	0.39	[0.33-0.45] unit increase	Affymetrix [10572788] (imputed)	N
604	chr6_mann_hap4	2619082	2619083	rs6457374	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	6p21.33	HLA-C	rs6457374-T	0.73	8E-35		0.041	[0.035-0.047] unit decrease	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
604	chr6_mann_hap4	2619142	2619143	rs9368677	23042114	Hirota T	2012-10-07	Nat Genet	Genome-wide association study identifies eight new susceptibility loci for atopic dermatitis in the Japanese population.	Atopic dermatitis	1,472 Japanese ancestry cases, 7,971 Japanese ancestry controls	1,856 Japanese ancestry cases, 7,021 Japanese ancestry controls	6p21.33	HLA-C	rs9368677-G	0.798	1E-17		1.36	[1.27-1.46]	Illumina [606164]	N
604	chr6_mann_hap4	2619374	2619375	rs9264904	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.33		rs9264904-G	0.739	4E-158				Affymetrix [10369434] (imputed)	N
604	chr6_mann_hap4	2619374	2619375	rs9264904	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.10	rs9264904-A	NR	3E-11		0.0214122	[0.015-0.028] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_mann_hap4	2619374	2619375	rs9264904	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.10	rs9264904-A	NR	8E-11		0.0209999	[0.015-0.027] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_mann_hap4	2619374	2619375	rs9264904	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.10	rs9264904-A	NR	8E-9		0.0188102	[0.012-0.025] unit increase	Affymetrix [321169] (imputed)	N
604	chr6_mann_hap4	2619374	2619375	rs9264904	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	6p21.33	XXbac-BPG248L24.13	rs9264904-A	0.260825	6E-13		0.019344117	[0.014-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
604	chr6_mann_hap4	2619374	2619375	rs9264904	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	6p21.33	NR	rs9264904-A	0.262119	3E-387		0.091059	[0.087-0.095] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
604	chr6_mann_hap4	2620318	2620319	rs2508008	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p21.33	NR	rs2508008-G	0.119	3E-6	(IFNAR2_of_CD8p_T)			Illumina [5084123] (imputed)	N
604	chr6_mann_hap4	2620566	2620567	rs3873386	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.10	rs3873386-C	NR	9E-11		0.0189406	[0.013-0.025] unit decrease	Affymetrix [321016] (imputed)	N
604	chr6_mann_hap4	2620848	2620849	rs1634761	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.10	rs1634761-T	NR	6E-12		0.0193034	[0.014-0.025] unit decrease	Affymetrix [321016] (imputed)	N
604	chr6_mann_hap4	2620848	2620849	rs1634761	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.10	rs1634761-T	NR	1E-13		0.0211552	[0.016-0.027] unit increase	Affymetrix [321169] (imputed)	N
604	chr6_mann_hap4	2621119	2621120	rs9264941	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	6p21.33	XXbac-BPG248L24.13	rs9264941-A	0.167	6E-44		0.066809	[0.057-0.076] unit increase	Affymetrix [~ 2500000] (imputed)	N
604	chr6_mann_hap4	2621201	2621202	rs9264942	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	6p21.33	NR	rs9264942-?	NR	5E-25	(EA)			Affymetrix, Illumina [~ 9000000] (imputed)	N
604	chr6_mann_hap4	2621201	2621202	rs9264942	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Crohn's disease	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls	6p21.33	PSORS1C1, NFKBIL1, HLA-C, MICB	rs9264942-C	0.378	5E-28		1.145	[1.107-1.184]	Affymetrix, Illumina [1230000] (imputed)	N
604	chr6_mann_hap4	2621201	2621202	rs9264942	21051598	Pereyra F	2010-11-04	Science	The major genetic determinants of HIV-1 control affect HLA class I peptide presentation.	HIV-1 control	516 European cases, 1,196 European controls, 341 African American cases, 892 African American controls, 117 Hispanic cases, 560 Hispanic controls	NA	6p21.33	HLA-C	rs9264942-C	0.34	3E-35	(EA)	2.9	[NR]	Illumina [1384048] (imputed)	N
604	chr6_mann_hap4	2621201	2621202	rs9264942	20041166	Fellay J	2009-12-24	PLoS Genet	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	6p21.33	HLA-C	rs9264942-C	0.412	6E-32	(setpoint)	5.3	[NR] % increase	Illumina [NR]	N
604	chr6_mann_hap4	2621201	2621202	rs9264942	20041166	Fellay J	2009-12-24	PLoS Genet	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	6p21.33	HLA-C	rs9264942-?	NR	6E-12	(progression)			Illumina [NR]	N
604	chr6_mann_hap4	2621395	2621396	rs10484554	33385400	Patrick MT	2020-12-29	J Invest Dermatol	Causal relationship and shared genetic loci between psoriasis and type 2 diabetes through trans-disease meta-analysis.	Psoriasis or type 2 diabetes (trans-disease meta-analysis)(opposite effect)	11,024 European ancestry psoriasis cases, 74,124 European ancestry diabetes cases, 840,342 European ancestry controls	NA	6p21.33	NR	rs10484554-T		2E-302		1.67		NR [8016731] (imputed)	N
604	chr6_mann_hap4	2621395	2621396	rs10484554	26626624	Stuart PE	2015-11-28	Am J Hum Genet	Genome-wide Association Analysis of Psoriatic Arthritis and Cutaneous Psoriasis Reveals Differences in Their Genetic Architecture.	Cutaneous psoriasis	1,363 European ancestry cases, 4,934 European ancestry controls	up to 2,969 European ancestry cases, up to European ancestry 14,384 controls	6p21.33	HLA, HLA-C	rs10484554-T	NR	4E-207		3.304	NR	Illumina [11532644] (imputed)	N
604	chr6_mann_hap4	2621395	2621396	rs10484554	20953190	Strange A	2010-10-17	Nat Genet	A genome-wide association study identifies new psoriasis susceptibility loci and an interaction between HLA-C and ERAP1.	Psoriasis	2,178 European ancestry cases, 5,175 European ancestry controls	3,174 European ancestry cases, 5,464 European ancestry controls	6p21.33	HLA-C	rs10484554-?	NR	4E-214		4.66	[4.23-5.13]	Illumina [535475]	N
604	chr6_mann_hap4	2621395	2621396	rs10484554	19115949	Limou S	2009-01-01	J Infect Dis	Genomewide association study of an AIDS-nonprogression cohort emphasizes the role played by HLA genes (ANRS Genomewide Association Study 02).	AIDS progression	275 European ancestry seropositive non-progressors, 86 European ancestry seropositive rapid progressors, 1,352 European ancestry seronegative controls	(see Fellay 2007)	6p21.33	HLA-C	rs10484554-T	0.13	6E-8				Illumina [291119]	N
604	chr6_mann_hap4	2621395	2621396	rs10484554	18369459	Liu Y	2008-04-04	PLoS Genet	A genome-wide association study of psoriasis and psoriatic arthritis identifies new disease loci.	Psoriasis	218 European ancestry cases, 519 European ancestry controls	1,153 European ancestry cases, 1,217 European ancestry controls	6p21.33	HLA-C	rs10484554-T	0.15	2E-39		2.8	[2.40-3.30]	Illumina [305983]	N
605	chr6_mann_hap4	2621466	2621467	rs9264945	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	6p21.33	XXbac-BPG248L24.10	rs9264945-A	0.133478	2E-29		0.0345332	[0.028-0.041] unit increase	Affymetrix [93095623] (imputed)	N
605	chr6_mann_hap4	2621532	2621533	rs3094691	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.10	rs3094691-A	NR	1E-9		0.0192715	[0.013-0.025] unit increase	Affymetrix [323858] (imputed)	N
605	chr6_mann_hap4	2621532	2621533	rs3094691	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.10	rs3094691-A	NR	2E-8		0.0178577	[0.012-0.024] unit increase	Affymetrix [127266] (imputed)	N
605	chr6_mann_hap4	2621532	2621533	rs3094691	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.10	rs3094691-A	NR	4E-15		0.0225202	[0.017-0.028] unit increase	Affymetrix [321169] (imputed)	N
605	chr6_mann_hap4	2621591	2621592	rs3132479	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.10	rs3132479-G	NR	2E-12		0.019918	[0.014-0.025] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_mann_hap4	2621591	2621592	rs3132479	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.10	rs3132479-G	NR	3E-14		0.0234978	[0.017-0.03] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_mann_hap4	2621591	2621592	rs3132479	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	6p21.33	XXbac-BPG248L24.10	rs3132479-A	0.5388	2E-7		0.0369	[0.023-0.051] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
605	chr6_mann_hap4	2621591	2621592	rs3132479	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Perceived unattractiveness to mosquitoes	16,576 European ancestry individuals	NA	6p21.33	HLA-C, MICA	rs3132479-G	0.466	6E-7		0.11555	[0.07-0.161] unit decrease	Illumina [7433384] (imputed)	N
605	chr6_mann_hap4	2621633	2621633	rs540653847	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6p21.33	XXbac-BPG248L24.10	rs540653847-GC	0.00672899999999999	3E-18		0.12216329	[0.095-0.15] unit increase	Affymetrix [93095623] (imputed)	N
605	chr6_mann_hap4	2621633	2621633	rs540653847	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	6p21.33	XXbac-BPG248L24.10	rs540653847-GC	0.0064	8E-9		0.1328338	[0.088-0.178] unit increase	Affymetrix [~ 2500000] (imputed)	N
605	chr6_mann_hap4	2621633	2621633	rs540653847	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	6p21.33	XXbac-BPG248L24.10	rs540653847-GC	0.0064	6E-10		0.1418412	[0.097-0.187] unit increase	Affymetrix [~ 2500000] (imputed)	N
605	chr6_mann_hap4	2622489	2622490	rs3873387	29532581	Hallfors J	2018-03-13	Addict Biol	Genome-wide association study in Finnish twins highlights the connection between nicotine addiction and neurotrophin signaling pathway.	Smoking behaviour (maximum cigarettes in a 24 hour period)	1,711 Finnish ancestry ever smoker individuals from up to 739 families	NA	6p21.33	NR	rs3873387-A	0.24743	1E-6		2.706126	[1.61-3.80] unit decrease	Illumina [9469131] (imputed)	N
605	chr6_mann_hap4	2622653	2622654	rs3873388	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.10	rs3873388-G	NR	8E-10		0.0213529	[0.015-0.028] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_mann_hap4	2623139	2623140	rs1634794	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.33	Intergenic	rs1634794-T	NR	7E-10	(women)	0.0287016	[0.02-0.038] unit decrease	Illumina [13520550] (imputed)	N
605	chr6_mann_hap4	2623260	2623261	rs9264962	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.33	Intergenic	rs9264962-G	NR	8E-13		0.0264842	[0.019-0.034] unit increase	Illumina [13520550] (imputed)	N
605	chr6_mann_hap4	2623272	2623273	rs1005599	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small HDL	115,082 European ancestry individuals	NA	6p21.33		rs1005599-G	0.289198	3E-16		0.0361878	[0.028-0.045] unit decrease	NR [11722792] (imputed)	N
605	chr6_mann_hap4	2623272	2623273	rs1005599	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium HDL	115,082 European ancestry individuals	NA	6p21.33		rs1005599-G	0.289198	5E-16		0.0364668	[0.028-0.045] unit decrease	NR [11722792] (imputed)	N
605	chr6_mann_hap4	2623272	2623273	rs1005599	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in HDL	115,082 European ancestry individuals	NA	6p21.33		rs1005599-G	0.289198	2E-15		0.0354759	[0.027-0.044] unit decrease	NR [11722792] (imputed)	N
605	chr6_mann_hap4	2623272	2623273	rs1005599	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small HDL	115,082 European ancestry individuals	NA	6p21.33		rs1005599-G	0.289198	1E-19		0.0413294	[0.032-0.05] unit decrease	NR [11722792] (imputed)	N
605	chr6_mann_hap4	2623272	2623273	rs1005599	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total fatty acid levels	115,006 European ancestry individuals	NA	6p21.33		rs1005599-G	0.289208	7E-21		0.0423272	[0.033-0.051] unit decrease	NR [11722792] (imputed)	N
605	chr6_mann_hap4	2623272	2623273	rs1005599	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Saturated fatty acid levels	115,006 European ancestry individuals	NA	6p21.33		rs1005599-G	0.289208	7E-16		0.0364401	[0.028-0.045] unit decrease	NR [11722792] (imputed)	N
605	chr6_mann_hap4	2623272	2623273	rs1005599	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small HDL	115,082 European ancestry individuals	NA	6p21.33		rs1005599-G	0.289198	8E-20		0.0413457	[0.032-0.05] unit decrease	NR [11722792] (imputed)	N
605	chr6_mann_hap4	2623272	2623273	rs1005599	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Monounsaturated fatty acid levels	115,006 European ancestry individuals	NA	6p21.33		rs1005599-G	0.289208	4E-19		0.040361	[0.032-0.049] unit decrease	NR [11722792] (imputed)	N
605	chr6_mann_hap4	2623272	2623273	rs1005599	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycoprotein acetyls levels	115,082 European ancestry individuals	NA	6p21.33		rs1005599-G	0.289198	4E-32		0.0533982	[0.045-0.062] unit decrease	NR [11722792] (imputed)	N
605	chr6_mann_hap4	2623602	2623603	rs1634791	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total free cholesterol levels	115,082 European ancestry individuals	NA	6p21.33		rs1634791-A	0.450407	2E-10		0.0263105	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
605	chr6_mann_hap4	2623602	2623603	rs1634791	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total esterified cholesterol levels	115,082 European ancestry individuals	NA	6p21.33		rs1634791-A	0.450407	6E-11		0.0267294	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
605	chr6_mann_hap4	2623602	2623603	rs1634791	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol levels	115,082 European ancestry individuals	NA	6p21.33		rs1634791-A	0.450407	7E-11		0.0267605	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
605	chr6_mann_hap4	2623602	2623603	rs1634791	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Sphingomyelin levels	115,006 European ancestry individuals	NA	6p21.33		rs1634791-A	0.450416	2E-11		0.0265776	[0.019-0.034] unit decrease	NR [11722792] (imputed)	N
605	chr6_mann_hap4	2623602	2623603	rs1634791	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in LDL	115,082 European ancestry individuals	NA	6p21.33		rs1634791-A	0.450407	7E-10		0.0260256	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
605	chr6_mann_hap4	2623602	2623603	rs1634791	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	6p21.33	NR	rs1634791-A	0.455909	8E-23		0.011832	[0.0093-0.0143] unit increase	Affymetrix [16585854] (imputed)	N
605	chr6_mann_hap4	2623602	2623603	rs1634791	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	6p21.33	NR	rs1634791-A	0.455909	1E-12		0.0102161	[0.0074-0.0131] unit increase	Affymetrix [16585866] (imputed)	N
605	chr6_mann_hap4	2627036	2627037	rs117298325	30498034	Terao C	2018-11-29	Proc Natl Acad Sci U S A	Genetic determinants and an epistasis of LILRA3 and HLA-B*52 in Takayasu arteritis.	Takayasu arteritis	411 Japanese ancestry cases, 2,158 Japanese ancestry controls	219 Japanese ancestry cases, 3,770 Japanese ancestry controls	6p21.33	HLA-B	rs117298325-C	NR	4E-34				Illumina [5878075] (imputed)	N
605	chr6_mann_hap4	2630417	2630418	rs1634783	31738830	McGraw KL	2019-11-01	Blood Adv	Non-del(5q) myelodysplastic syndromes-associated loci detected by SNP-array genome-wide association meta-analysis.	Non-del(5q) myelodysplastic syndromes	907 European ancestry cases, 5,605 European ancestry controls	NA	6p21.33	intergenic	rs1634783-G	0.5	8E-7		1.3157895	[1.19-1.49]	Affymetrix [7515136] (imputed)	N
605	chr6_mann_hap4	2630880	2630881	rs1634738	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs1634738-A	0.276	1E-14	(alpha-2-macroglobulin receptor-associated protein, LRPAP1.8829.4.3)	0.22	[0.16-0.28] unit increase	Affymetrix [10572788] (imputed)	N
605	chr6_mann_hap4	2632967	2632968	rs28367727	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	6p21.33	NR	rs28367727-G	0.229348	1E-9		0.0520093	[0.035-0.069] unit decrease	Affymetrix [17914406] (imputed)	N
605	chr6_mann_hap4	2634362	2634363	rs9265113	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	6p21.33		rs9265113-C	0.592366	4E-13		0.0285779	[0.021-0.036] unit increase	NR [11722792] (imputed)	N
605	chr6_mann_hap4	2634362	2634363	rs9265113	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large HDL	115,082 European ancestry individuals	NA	6p21.33		rs9265113-C	0.592366	3E-13		0.0287846	[0.021-0.037] unit increase	NR [11722792] (imputed)	N
605	chr6_mann_hap4	2634362	2634363	rs9265113	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	6p21.33		rs9265113-C	0.592366	2E-12		0.0277589	[0.02-0.035] unit increase	NR [11722792] (imputed)	N
605	chr6_mann_hap4	2634362	2634363	rs9265113	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	6p21.33		rs9265113-C	0.592366	8E-13		0.0281895	[0.02-0.036] unit increase	NR [11722792] (imputed)	N
605	chr6_mann_hap4	2634362	2634363	rs9265113	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	6p21.33		rs9265113-C	0.592366	2E-12		0.0281201	[0.02-0.036] unit increase	NR [11722792] (imputed)	N
605	chr6_mann_hap4	2634362	2634363	rs9265113	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	6p21.33		rs9265113-C	0.592366	3E-13		0.0295629	[0.022-0.037] unit increase	NR [11722792] (imputed)	N
605	chr6_mann_hap4	2634362	2634363	rs9265113	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	6p21.33		rs9265113-C	0.592366	1E-12		0.0281506	[0.02-0.036] unit increase	NR [11722792] (imputed)	N
605	chr6_mann_hap4	2634362	2634363	rs9265113	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	6p21.33		rs9265113-C	0.592366	1E-11		0.0270795	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
605	chr6_mann_hap4	2634906	2634907	rs9265143	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p21.33	NR	rs9265143-A	0.408	6E-6	(IFNalpha_STAT1_of_CD4p_T)			Illumina [5084123] (imputed)	N
605	chr6_mann_hap4	2635117	2635118	rs4445093	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (vasodilators used in cardiac diseases)	5,546 European ancestry cases, 237,113 European ancestry controls, 17,050 East Asian ancestry cases, 161,676 East Asian ancestry controls	NA	6p21.33		rs4445093-T	NR	3E-8		0.0768	[0.05-0.104] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
605	chr6_mann_hap4	2635766	2635767	rs9265153	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Angiopoietin-1 receptor levels	21,758 European ancestry individuals	9,173 individuals	6p21.33		rs9265153-C	0.37	1E-10		0.0638	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
605	chr6_mann_hap4	2635830	2635831	rs7748141	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PDIA5	5,366 Icelandic ancestry individuals	NA	6p21.33		rs7748141-C	0.07983	2E-47		0.504487	[0.44-0.57] unit increase	Illumina [7506463] (imputed)	N
605	chr6_mann_hap4	2639465	2639466	rs142174523	31594949	Nievergelt CM	2019-10-08	Nat Commun	International meta-analysis of PTSD genome-wide association studies identifies sex- and ancestry-specific genetic risk loci.	Post-traumatic stress disorder	23,212 European ancestry cases, 4,363 African ancestry cases, 1,981 Latino and Native American ancestry cases, 151,447 European ancestry controls, 10,976 African ancestry controls, 3,722 Latino and Native American ancestry controls	NA	6p21.33	NR	rs142174523-G	NR	4E-8	(African, male)	1.3157895	[1.19-1.45]	Affymetrix, Illumina [~ 1175791] (imputed)	N
605	chr6_mann_hap4	2640084	2640085	rs117309887	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PCSK7	5,355 Icelandic ancestry individuals	NA	6p21.33		rs117309887-T	0.09768	2E-14		0.238034	[0.18-0.3] unit increase	Illumina [7506463] (imputed)	N
605	chr6_mann_hap4	2641554	2641555	rs116576188	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs116576188-C	0.116	2E-22	(Ubiquitin carboxyl-terminal hydrolase 25, USP25.9215.117.3)	0.38	[0.3-0.46] unit increase	Affymetrix [10572788] (imputed)	N
605	chr6_mann_hap4	2641573	2641574	rs114046333	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p21.33	NR	rs114046333-?	NR	1E-14		0.2802	[0.21-0.35] unit decrease	Illumina [at least 560000] (imputed)	N
605	chr6_mann_hap4	2641594	2641595	rs3094685	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DNAJC10	5,351 Icelandic ancestry individuals	NA	6p21.33		rs3094685-T	0.2128	3E-35		0.266011	[0.22-0.31] unit increase	Illumina [7506463] (imputed)	N
605	chr6_mann_hap4	2641719	2641720	rs3130703	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 23)	2,187 European ancestry individuals	NA	6p21.33	NR	rs3130703-C	0.2795	4E-7		0.1707	[0.1-0.24] unit increase	Illumina [10677593] (imputed)	N
605	chr6_mann_hap4	2644950	2644951	rs28895001	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.33		rs28895001-T	0.163489	8E-27		0.045384236	[0.037-0.054] unit decrease	Affymetrix [93095623] (imputed)	N
605	chr6_mann_hap4	2645508	2645509	rs7772894	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on memory B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs7772894-T	0.10721	3E-9		0.2956	[0.2-0.39] unit increase	Illumina [18238311] (imputed)	N
605	chr6_mann_hap4	2645508	2645509	rs7772894	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on CD24+ CD27+ B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs7772894-T	0.10721	3E-9		0.2945	[0.2-0.39] unit increase	Illumina [18238311] (imputed)	N
605	chr6_mann_hap4	2645872	2645873	rs17192757	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling miserable	376,097 European ancestry individuals	NA	6p21.33	PSORS1C1	rs17192757-A	0.132647	5E-8		5.46	z score increase	NR [10847151] (imputed)	N
605	chr6_mann_hap4	2645904	2645904	rs111743557	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-B	rs111743557-TTG	NR	5E-9		0.0221507	[0.015-0.03] unit decrease	Affymetrix [323858] (imputed)	N
605	chr6_mann_hap4	2645904	2645904	rs111743557	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HLA-B	rs111743557-TTG	NR	2E-8		0.0212612	[0.014-0.029] unit decrease	Affymetrix [127266] (imputed)	N
605	chr6_mann_hap4	2645904	2645904	rs111743557	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.33	NR	rs111743557-T	0.888	2E-18	(conditional)	0.729	[0.66-0.8]	Illumina [11270530] (imputed)	N
605	chr6_mann_hap4	2646091	2646092	rs9265620	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	6p21.33		rs9265620-T	0.629786	1E-11		0.0263927	[0.019-0.034] unit decrease	NR [11722792] (imputed)	N
605	chr6_mann_hap4	2646091	2646092	rs9265620	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	6p21.33		rs9265620-T	0.629787	7E-13		0.0279211	[0.02-0.036] unit increase	NR [11722792] (imputed)	N
605	chr6_mann_hap4	2646690	2646691	rs6902116	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	6p21.33	HLA-B	rs6902116-A	0.677972	2E-40		0.0274179	[0.023-0.031] unit increase	Affymetrix [NR] (imputed)	N
605	chr6_mann_hap4	2647223	2647224	rs12212594	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Psoriasis vulgaris	5,072 European ancestry cases, 478,102 European ancestry controls, 206 East Asian ancestry cases, 172,289 East Asian ancestry controls	NA	6p21.33		rs12212594-C	NR	5E-209		1.4454	[1.35-1.54] unit increase	Affymetrix, Illumina [25844455] (imputed)	N
605	chr6_mann_hap4	2647743	2647744	rs6908001	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	6p21.33		rs6908001-C	NR	4E-36		0.0278	[0.023-0.032] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
605	chr6_mann_hap4	2648046	2648047	rs28752871	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	76 Han Chinese ancestry cases, 889 Han Chinese ancestry controls	NA	6p21.33	HLA-B	rs28752871-?	NR	5E-8	(conditional on rs12110437 and rs1264697)			Illumina [3403929] (imputed)	N
605	chr6_mann_hap4	2648936	2648937	rs9265742	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CPXM1	5,363 Icelandic ancestry individuals	NA	6p21.33		rs9265742-A	0.2045	4E-12		0.162501	[0.12-0.21] unit decrease	Illumina [7506463] (imputed)	N
605	chr6_mann_hap4	2649054	2649055	rs11968046	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	6p21.33		rs11968046-C	0.772833	5E-11		0.0309702	[0.022-0.04] unit decrease	NR [11722792] (imputed)	N
605	chr6_mann_hap4	2649054	2649055	rs11968046	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	6p21.33		rs11968046-C	0.772833	2E-10		0.0301683	[0.021-0.04] unit decrease	NR [11722792] (imputed)	N
605	chr6_mann_hap4	2649054	2649055	rs11968046	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	6p21.33		rs11968046-C	0.772833	2E-10		0.030047	[0.021-0.039] unit decrease	NR [11722792] (imputed)	N
605	chr6_mann_hap4	2649054	2649055	rs11968046	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Triglyceride levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	6p21.33	HLA-C, HLA-B	rs11968046-?		2E-11		0.0605	[0.043-0.078] unit decrease	Illumina [31500000] (imputed)	N
605	chr6_mann_hap4	2649130	2649131	rs9265745	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.33		rs9265745-A	0.591	7E-36				Affymetrix [10369434] (imputed)	N
605	chr6_mann_hap4	2649688	2649689	rs1634774	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.33		rs1634774-A	0.68	1E-34				Affymetrix [10369434] (imputed)	N
605	chr6_mann_hap4	2649692	2649693	rs28752890	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs28752890-A	NR	2E-12		0.0210684	[0.015-0.027] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_mann_hap4	2649692	2649693	rs28752890	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs28752890-A	NR	1E-11		0.0202141	[0.014-0.026] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_mann_hap4	2649692	2649693	rs28752890	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs28752890-A	NR	4E-11		0.0198841	[0.014-0.026] unit increase	Affymetrix [321169] (imputed)	N
605	chr6_mann_hap4	2649737	2649738	rs114444221	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	6p21.33	HLA-B	rs114444221-?	NR	9E-18		1.133	[1.1-1.16]	Affymetrix [9000000] (imputed)	N
605	chr6_mann_hap4	2649737	2649738	rs114444221	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	6p21.33	HLA-B	rs114444221-A	NR	9E-16		1.134	[1.1-1.17]	Affymetrix [9000000] (imputed)	N
605	chr6_mann_hap4	2650293	2650294	rs28752923	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6p21.33		rs28752923-?	NR	4E-10		0.9344	[0.91-0.96]	NR [685523]	N
605	chr6_mann_hap4	2650336	2650337	rs28752924	34454985	Sliz E	2021-08-26	J Allergy Clin Immunol	Uniting biobank resources reveals novel genetic pathways modulating susceptibility for atopic dermatitis.	Atopic dermatitis	22,474 European ancestry cases, 774,187 European ancestry controls	NA	6p21.33	NR	rs28752924-t	0.6336	5E-11		1.1	[1.07-1.14]	Affymetrix, Illumina [16201029] (imputed)	N
605	chr6_mann_hap4	2650706	2650707	rs28752936	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs28752936-A	NR	5E-11		0.0187215	[0.013-0.024] unit increase	Affymetrix [321169] (imputed)	N
605	chr6_mann_hap4	2650810	2650811	rs1634769	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p21.33	NR	rs1634769-A	0.649245	2E-13		0.026251458	[0.019-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
605	chr6_mann_hap4	2650903	2650904	rs380852	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6p21.33	NR	rs380852-T	0.05472	7E-15		1.107	[1.08-1.135]	Affymetrix [15688218] (imputed)	N
605	chr6_mann_hap4	2651049	2651050	rs28752949	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs28752949-A	NR	3E-9		0.0170482	[0.011-0.023] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_mann_hap4	2652050	2652051	rs1631951	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p21.33	NR	rs1631951-T	0.18	4E-12		1.15	[1.11-1.2]	Affymetrix [9886854] (imputed)	N
605	chr6_mann_hap4	2652050	2652051	rs1631951	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p21.33	NR	rs1631951-T	0.18	6E-17			[NR]	Affymetrix [9886854] (imputed)	N
605	chr6_mann_hap4	2652050	2652051	rs1631951	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p21.33	NR	rs1631951-T	0.18	2E-15		1.13	[1.1-1.16]	Affymetrix [9886854] (imputed)	N
605	chr6_mann_hap4	2652050	2652051	rs1631951	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p21.33	NR	rs1631951-T	0.18	3E-16			[NR]	Affymetrix [9886854] (imputed)	N
605	chr6_mann_hap4	2652050	2652051	rs1631951	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in non-current smokers	16,488 European ancestry cases, 169,688 European ancestry controls	NA	6p21.33	NR	rs1631951-T	0.18	2E-15		1.13	[1.1-1.16]	Affymetrix [9886854] (imputed)	N
605	chr6_mann_hap4	2652050	2652051	rs1631951	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in never smokers	8,631 European ancestry cases, 120,544 European ancestry controls	NA	6p21.33	NR	rs1631951-T	0.18	3E-12		1.15	[1.11-1.2]	Affymetrix [9886854] (imputed)	N
605	chr6_mann_hap4	2652050	2652051	rs1631951	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in ever smokers	12,446 European ancestry cases, 59,145 European ancestry controls	NA	6p21.33	NR	rs1631951-T	0.18	4E-7		1.1	[1.06-1.14]	Affymetrix [9886854] (imputed)	N
605	chr6_mann_hap4	2652140	2652141	rs28367832	32004448	Savage SA	2020-01-30	Am J Hum Genet	Genome-wide Association Study Identifies HLA-DPB1 as a Significant Risk Factor for Severe Aplastic Anemia.	Severe aplastic anemia	359 European ancestry cases, 1,396 European ancestry controls	175 European ancestry cases, 1,059 European ancestry controls	6p21.33	HLA-B	rs28367832-?	NR	7E-9		1.49	[1.22-1.78]	Illumina [688067]	N
605	chr6_mann_hap4	2652829	2652830	rs1625792	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Help-seeking from a GP	113,262 British ancestry cases, 219,360 British ancestry controls	NA	6p21.33	NR	rs1625792-G	0.853	5E-8		1.0405828	[1.03-1.05]	NR [5276842] (imputed)	N
605	chr6_mann_hap4	2652829	2652830	rs1625792	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p21.33	NR	rs1625792-?	NR	1E-7		5.298	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
605	chr6_mann_hap4	2655261	2655262	rs1622406	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	HLA-B, HLA-C, XXbac-BPG248L24.12, MICB, USP8P1, RPL3P2, MIR6891, PPIAP9, XXbac-BPG16N22.5	rs1622406-T	0.03009027	7E-63	(EA, Alpha-2-macroglobulin receptor-associated protein)	2.011	[1.79-2.23] unit increase	Affymetrix [509946]	N
605	chr6_mann_hap4	2655656	2655657	rs34872474	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.33		rs34872474-G	0.0764200000000001	2E-15		0.042707935	[0.032-0.053] unit decrease	Affymetrix [93095623] (imputed)	N
605	chr6_mann_hap4	2655846	2655847	rs113021938	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	6p21.33		rs113021938-G	0.027345	2E-14		0.052308656	[0.039-0.066] unit decrease	Affymetrix [93095623] (imputed)	N
605	chr6_mann_hap4	2657646	2657647	rs2854011	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.33		rs2854011-G	0.848	4E-80				Affymetrix [10369434] (imputed)	N
605	chr6_mann_hap4	2657646	2657647	rs2854011	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p21.33		rs2854011-G	0.848	4E-55				Affymetrix [10369434] (imputed)	N
605	chr6_mann_hap4	2657730	2657731	rs28380833	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs28380833-?		8E-9		1.8	[1.47-2.20]	Illumina [7645193] (imputed)	N
605	chr6_mann_hap4	2657788	2657789	rs9265828	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6p21.33		rs9265828-G	0.569472	1E-13		0.026239738	[0.019-0.033] unit increase	Affymetrix [93095623] (imputed)	N
605	chr6_mann_hap4	2657809	2657810	rs9265830	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs9265830-A	NR	5E-28		0.0333407	[0.027-0.039] unit decrease	Affymetrix [319769] (imputed)	N
605	chr6_mann_hap4	2657809	2657810	rs9265830	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs9265830-A	NR	3E-26		0.0322127	[0.026-0.038] unit decrease	Affymetrix [319769] (imputed)	N
605	chr6_mann_hap4	2657809	2657810	rs9265830	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs9265830-A	NR	1E-8		0.0174211	[0.011-0.023] unit decrease	Affymetrix [321114] (imputed)	N
605	chr6_mann_hap4	2657809	2657810	rs9265830	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs9265830-A	NR	4E-25		0.0318177	[0.026-0.038] unit decrease	Affymetrix [321169] (imputed)	N
605	chr6_mann_hap4	2658345	2658346	rs2394976	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to omega-3 fatty acids	115,006 European ancestry individuals	NA	6p21.33		rs2394976-G	0.838358	5E-9		0.0315075	[0.021-0.042] unit decrease	NR [11722792] (imputed)	N
605	chr6_mann_hap4	2658492	2658493	rs2394977	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-B	rs2394977-G	NR	2E-12		0.0222252	[0.016-0.028] unit increase	Affymetrix [323858] (imputed)	N
605	chr6_mann_hap4	2658492	2658493	rs2394977	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HLA-B	rs2394977-G	NR	4E-11		0.0207721	[0.015-0.027] unit increase	Affymetrix [127266] (imputed)	N
605	chr6_mann_hap4	2658492	2658493	rs2394977	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-B	rs2394977-G	NR	6E-20		0.028162	[0.022-0.034] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_mann_hap4	2658493	2658494	rs2256752	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	6p21.33	intergenic	rs2256752-C	0.3515	2E-13		0.02753249	[0.02-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
605	chr6_mann_hap4	2658727	2658728	rs4521636	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-B	rs4521636-T	NR	2E-9		0.0186949	[0.013-0.025] unit decrease	Affymetrix [323858] (imputed)	N
605	chr6_mann_hap4	2658727	2658728	rs4521636	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HLA-B	rs4521636-T	NR	2E-8		0.0174949	[0.011-0.024] unit decrease	Affymetrix [127266] (imputed)	N
605	chr6_mann_hap4	2658727	2658728	rs4521636	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-B	rs4521636-T	NR	2E-16		0.0251493	[0.019-0.031] unit increase	Affymetrix [323123] (imputed)	N
605	chr6_mann_hap4	2658763	2658764	rs3134792	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.33	intergenic	rs3134792-C	0.114	6E-72		3.93	[NR]	Illumina [242824]	N
605	chr6_mann_hap4	2658763	2658764	rs3134792	18364390	Capon F	2008-03-25	Hum Mol Genet	Identification of ZNF313/RNF114 as a novel psoriasis susceptibility gene.	Psoriasis	318 European ancestry cases, 288 European ancestry controls	2,361 European ancestry cases, 1,927 European ancestry controls	6p21.33	HLA-C	rs3134792-?	NR	1E-9				Illumina [~ 408000]	N
605	chr6_mann_hap4	2658975	2658976	rs2854008	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p21.33	NR	rs2854008-A	0.274988	5E-92				Affymetrix, Illumina [24332387] (imputed)	N
605	chr6_mann_hap4	2658975	2658976	rs2854008	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	6p21.33	NR	rs2854008-A	0.293344	2E-97		0.04242	[0.038-0.046] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
605	chr6_mann_hap4	2659468	2659469	rs2394982	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	6p21.33	intergenic	rs2394982-T	0.3056	8E-9		0.02209588	[0.015-0.03] unit increase	Affymetrix [~ 2500000] (imputed)	N
605	chr6_mann_hap4	2659471	2659472	rs9265878	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs9265878-G	0.732	2E-102				Affymetrix [10369434] (imputed)	N
605	chr6_mann_hap4	2659658	2659659	rs9265885	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	120,539 East Asian ancestry individuals	NA	6p21.33		rs9265885-C	0.425161	1E-20		0.0356702	[0.028-0.043] unit decrease	Illumina [13474682] (imputed)	N
605	chr6_mann_hap4	2659696	2659697	rs9265888	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs9265888-T	NR	2E-8		0.0163341	[0.011-0.022] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_mann_hap4	2659908	2659909	rs9265902	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.33		rs9265902-G	0.721	5E-33				Affymetrix [10369434] (imputed)	N
605	chr6_mann_hap4	2659908	2659909	rs9265902	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-B	rs9265902-A	NR	1E-9		0.0207461	[0.014-0.027] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_mann_hap4	2659908	2659909	rs9265902	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs9265902-A	NR	1E-8		0.0181136	[0.012-0.024] unit increase	Affymetrix [321169] (imputed)	N
605	chr6_mann_hap4	2660039	2660040	rs9265906	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-B	rs9265906-C	NR	5E-8		0.0168982	[0.011-0.023] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_mann_hap4	2660039	2660040	rs9265906	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs9265906-C	NR	4E-8		0.0157447	[0.01-0.021] unit increase	Affymetrix [321169] (imputed)	N
605	chr6_mann_hap4	2660503	2660504	rs12175330	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-B	rs12175330-T	NR	1E-13		0.0240282	[0.018-0.03] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_mann_hap4	2660503	2660504	rs12175330	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs12175330-T	NR	1E-8		0.0170347	[0.011-0.023] unit increase	Affymetrix [321169] (imputed)	N
605	chr6_mann_hap4	2660543	2660544	rs3016018	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.33		rs3016018-C	NR	2E-14		1.132	[1.097-1.169]	Affymetrix [7846216] (imputed)	N
605	chr6_mann_hap4	2661083	2661084	rs2507999	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Keratinocyte cancer (MTAG)	at least 18,538 European ancestry cases, at least 340,302 European ancestry controls	NA	6p21.33	HLA-B	rs2507999-A	0.328281	1E-10		1.0638298	[1.04-1.08]	Affymetrix [7600000] (imputed)	N
605	chr6_mann_hap4	2661470	2661471	rs9265940	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs9265940-G	NR	3E-19		0.0271089	[0.021-0.033] unit increase	Affymetrix [321016] (imputed)	N
605	chr6_mann_hap4	2661495	2661496	rs9265942	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	6p21.33		rs9265942-C	0.871684	4E-12		0.0455219	[0.033-0.058] unit decrease	NR [11722792] (imputed)	N
605	chr6_mann_hap4	2661673	2661674	rs28771425	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	CX3CL1 levels	21,758 European ancestry individuals	9,173 individuals	6p21.33		rs28771425-A	0.43	5E-19		0.099	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
605	chr6_mann_hap4	2661792	2661793	rs9265954	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	6p21.33	HLA-B	rs9265954-T	0.0497	2E-18		0.0604	[0.047-0.074] unit increase	Affymetrix [18391927] (imputed)	N
605	chr6_mann_hap4	2661816	2661817	rs9265956	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.33		rs9265956-T	0.324	2E-45				Affymetrix [10369434] (imputed)	N
605	chr6_mann_hap4	2661861	2661861	rs111721712	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6p21.33		rs111721712-C	0.530439	2E-12		0.0293352	[0.021-0.037] unit increase	NR [11722792] (imputed)	N
605	chr6_mann_hap4	2661861	2661861	rs111721712	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6p21.33		rs111721712-C	0.530439	1E-12		0.0294594	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
605	chr6_mann_hap4	2661861	2661861	rs111721712	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	6p21.33		rs111721712-C	0.534	9E-42		0.15	[0.13-0.17] % increase	Affymetrix [NR] (imputed)	N
605	chr6_mann_hap4	2661861	2661861	rs111721712	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs111721712-CT	NR	8E-10		0.0174035	[0.012-0.023] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_mann_hap4	2661861	2661861	rs111721712	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	6p21.33	intergenic	rs111721712-CT	0.4708	1E-26		0.03814722	[0.031-0.045] unit increase	Affymetrix [~ 2500000] (imputed)	N
605	chr6_mann_hap4	2661965	2661966	rs116685461	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	6p21.33	MHC	rs116685461-G	0.8755	3E-6		1.06	[1.04-1.09]	Affymetrix, Illumina [16900397] (imputed)	N
605	chr6_mann_hap4	2661965	2661966	rs116685461	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	6p21.33	intergenic	rs116685461-A	0.098	5E-11		0.04047215	[0.028-0.053] unit decrease	Affymetrix [~ 2500000] (imputed)	N
605	chr6_mann_hap4	2662082	2662083	rs9265965	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium HDL	115,082 European ancestry individuals	NA	6p21.33		rs9265965-T	0.867699	1E-14		0.0453236	[0.034-0.057] unit increase	NR [11722792] (imputed)	N
605	chr6_mann_hap4	2662101	2662102	rs2523625	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Body fat percentage variance	341,632 European ancestry individuals	NA	6p21.33	HLA-B	rs2523625-?	NR	3E-10				NR [5554549] (imputed)	N
605	chr6_mann_hap4	2662116	2662117	rs9265968	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	6p21.33	HLA-B	rs9265968-A	0.866272	1E-21		0.0201268	[0.016-0.024] unit decrease	Affymetrix [12370749]	N
605	chr6_mann_hap4	2662913	2662914	rs116438126	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	6p21.33	intergenic	rs116438126-T	0.0084	6E-18		0.1721088	[0.13-0.21] unit increase	Affymetrix [~ 2500000] (imputed)	N
605	chr6_mann_hap4	2663024	2663025	rs200291258	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atopic dermatitis	4,296 East Asian ancestry cases, 163,807 East Asian ancestry controls	NA	6p21.33		rs200291258-A	0.179174296	6E-15		0.25656497	[0.19-0.32] unit decrease	Illumina [13428180] (imputed)	N
605	chr6_mann_hap4	2663213	2663214	rs5014819	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs5014819-T	NR	3E-15		0.0226584	[0.017-0.028] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_mann_hap4	2663364	2663365	rs2923008	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in diabetes	70,762 European ancestry individuals, 20,967 African American individuals	NA	6p21.33	HLA-B	rs2923008-T	0.106	2E-12		1.017	[0.73-1.3] unit decrease	Affymetrix [NR] (imputed)	N
605	chr6_mann_hap4	2665032	2665033	rs34213790	28062682	Carr DF	2017-01-05	J Antimicrob Chemother	Genome-wide association study of nevirapine hypersensitivity in a sub-Saharan African HIV-infected population.	Nevirapine-induced hypersensitivity in HIV	151 Sub-saharan African ancestry cases, 182 Sub-saharan African ancestry controls	62 Sub-Saharan African ancestry cases, 60 Sub-Saharan African ancestry controls	6p21.33	HLA-B	rs34213790-A	0.37	7E-7		2.06	[1.55-2.74]	Illumina [14218511] (imputed)	N
605	chr6_mann_hap4	2665083	2665084	rs9266043	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-B	rs9266043-A	NR	8E-29		0.035895	[0.03-0.042] unit increase	Affymetrix [323123] (imputed)	N
605	chr6_mann_hap4	2665238	2665239	rs2596505	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p21.33	NR	rs2596505-T	0.1681	1E-8		0.009	[0.0059-0.0121] unit decrease	NR [7666894] (imputed)	N
605	chr6_mann_hap4	2665425	2665426	rs9391774	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	6p21.33	HLA-B	rs9391774-A	0.070171	8E-17		0.03854895	[0.029-0.048] unit decrease	Affymetrix [93095623] (imputed)	N
605	chr6_mann_hap4	2665532	2665533	rs73728881	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.33		rs73728881-C	0.408	8E-101				Affymetrix [10369434] (imputed)	N
605	chr6_mann_hap4	2665609	2665610	rs2442730	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	6p21.33	HLA-B	rs2442730-A	0.723193	2E-43		0.03767923	[0.032-0.043] unit decrease	Affymetrix [93095623] (imputed)	N
605	chr6_mann_hap4	2665674	2665675	rs9266059	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs9266059-C	NR	7E-15		0.0219789	[0.016-0.028] unit decrease	Affymetrix [319769] (imputed)	N
605	chr6_mann_hap4	2665674	2665675	rs9266059	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs9266059-C	NR	1E-13		0.0210357	[0.015-0.027] unit decrease	Affymetrix [319769] (imputed)	N
605	chr6_mann_hap4	2665674	2665675	rs9266059	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs9266059-C	NR	3E-12		0.0197526	[0.014-0.025] unit increase	Affymetrix [321016] (imputed)	N
605	chr6_mann_hap4	2665674	2665675	rs9266059	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-B	rs9266059-C	NR	2E-12		0.0216682	[0.016-0.028] unit increase	Affymetrix [323123] (imputed)	N
605	chr6_mann_hap4	2665674	2665675	rs9266059	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs9266059-C	NR	3E-12		0.0199124	[0.014-0.026] unit decrease	Affymetrix [321169] (imputed)	N
605	chr6_mann_hap4	2665841	2665842	rs9266063	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs9266063-A	NR	1E-9		0.017108	[0.012-0.023] unit increase	Affymetrix [321016] (imputed)	N
605	chr6_mann_hap4	2665847	2665848	rs34429926	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	6p21.33	HLA-C, HLA-B	rs34429926-?	NR	3E-29		0.04099494	[0.034-0.048] unit increase	Illumina [27896057] (imputed)	N
605	chr6_mann_hap4	2665939	2665940	rs9405083	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-B	rs9405083-T	NR	5E-10		0.0221393	[0.015-0.029] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_mann_hap4	2666036	2666037	rs4644106	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs4644106-C	NR	9E-14		0.0259517	[0.019-0.033] unit decrease	Affymetrix [319769] (imputed)	N
605	chr6_mann_hap4	2666036	2666037	rs4644106	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs4644106-C	NR	9E-14		0.0259699	[0.019-0.033] unit decrease	Affymetrix [319769] (imputed)	N
605	chr6_mann_hap4	2666036	2666037	rs4644106	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-B	rs4644106-C	NR	5E-10		0.0235741	[0.016-0.031] unit increase	Affymetrix [323123] (imputed)	N
605	chr6_mann_hap4	2666053	2666054	rs28380929	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pneumonia	7,423 East Asian ancestry cases, 171,303 East Asian ancestry controls	NA	6p21.33		rs28380929-T	0.015924804	5E-22		0.70876914	[0.56-0.85] unit increase	Illumina [13429980] (imputed)	N
605	chr6_mann_hap4	2666332	2666333	rs9266077	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p21.33	XXbac-BPG248L24.12	rs9266077-G	0.149984	4E-50		0.05959745	[0.052-0.067] unit increase	Affymetrix [93095623] (imputed)	N
605	chr6_mann_hap4	2666349	2666350	rs2442725	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs2442725-T	NR	5E-8		0.0167286	[0.011-0.023] unit decrease	Affymetrix [319769] (imputed)	N
605	chr6_mann_hap4	2666349	2666350	rs2442725	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs2442725-T	NR	4E-8		0.0167925	[0.011-0.023] unit decrease	Affymetrix [319769] (imputed)	N
605	chr6_mann_hap4	2666376	2666377	rs36057735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium HDL	115,082 European ancestry individuals	NA	6p21.33		rs36057735-C	0.80097	9E-14		0.0357792	[0.026-0.045] unit increase	NR [11722792] (imputed)	N
605	chr6_mann_hap4	2666376	2666377	rs36057735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in HDL	115,082 European ancestry individuals	NA	6p21.33		rs36057735-C	0.80097	8E-14		0.0346386	[0.026-0.044] unit increase	NR [11722792] (imputed)	N
605	chr6_mann_hap4	2666376	2666377	rs36057735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in HDL	115,082 European ancestry individuals	NA	6p21.33		rs36057735-C	0.80097	2E-13		0.0344232	[0.025-0.044] unit increase	NR [11722792] (imputed)	N
605	chr6_mann_hap4	2666376	2666377	rs36057735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	6p21.33		rs36057735-C	0.80097	5E-14		0.035387	[0.026-0.045] unit increase	NR [11722792] (imputed)	N
605	chr6_mann_hap4	2666376	2666377	rs36057735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium HDL particles	115,082 European ancestry individuals	NA	6p21.33		rs36057735-C	0.80097	9E-14		0.0354958	[0.026-0.045] unit increase	NR [11722792] (imputed)	N
605	chr6_mann_hap4	2666376	2666377	rs36057735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium HDL	115,082 European ancestry individuals	NA	6p21.33		rs36057735-C	0.80097	3E-12		0.0333993	[0.024-0.043] unit increase	NR [11722792] (imputed)	N
605	chr6_mann_hap4	2666376	2666377	rs36057735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	6p21.33		rs36057735-C	0.80097	9E-13		0.0339999	[0.025-0.043] unit increase	NR [11722792] (imputed)	N
605	chr6_mann_hap4	2666376	2666377	rs36057735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein A1 levels	115,082 European ancestry individuals	NA	6p21.33		rs36057735-C	0.80097	4E-14		0.0357836	[0.027-0.045] unit increase	NR [11722792] (imputed)	N
605	chr6_mann_hap4	2666376	2666377	rs36057735	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	6p21.33	HLA-B	rs36057735-C	0.800848	3E-35		0.0304388	[0.026-0.035] unit increase	Affymetrix [NR] (imputed)	N
605	chr6_mann_hap4	2666376	2666377	rs36057735	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling nervous	373,121 European ancestry individuals	NA	6p21.33	NR	rs36057735-C	0.195566	1E-8		5.69	z score increase	NR [10847151] (imputed)	N
605	chr6_mann_hap4	2666376	2666377	rs36057735	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.33	C6orf15, CCHCR1, CDSN, HCG22, HCG26, HCG27, HCP5, HLA-B, HLA-C, MICA, MIR6891, POU5F1, PSORS1C1, PSORS1C2, PSORS1C3, TCF19	rs36057735-C		2E-12		1.1	[1.07-1.13]	Affymetrix, Illumina [NR]	N
605	chr6_mann_hap4	2666762	2666763	rs2507993	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large HDL	115,082 European ancestry individuals	NA	6p21.33		rs2507993-C	0.51967	4E-10		0.0257964	[0.018-0.034] unit increase	NR [11722792] (imputed)	N
605	chr6_mann_hap4	2666762	2666763	rs2507993	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large HDL	115,082 European ancestry individuals	NA	6p21.33		rs2507993-C	0.51967	2E-9		0.0247775	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
605	chr6_mann_hap4	2666762	2666763	rs2507993	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large HDL particles	115,082 European ancestry individuals	NA	6p21.33		rs2507993-C	0.51967	9E-10		0.0253075	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
605	chr6_mann_hap4	2666762	2666763	rs2507993	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	6p21.33		rs2507993-C	0.51967	4E-11		0.0271386	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
605	chr6_mann_hap4	2666762	2666763	rs2507993	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	6p21.33		rs2507993-C	0.51967	4E-11		0.0272976	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
605	chr6_mann_hap4	2666962	2666963	rs9266089	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Chickenpox	107,769 European ancestry cases, 15,982 European ancestry controls	NA	6p21.33	HLA-B	rs9266089-G	0.85	1E-10		1.12	[1.1-1.14]	Illumina [at least 560000] (imputed)	N
605	chr6_mann_hap4	2666991	2666992	rs2442719	26039976	Wei Z	2015-06-17	Sci Rep	Genome-Wide Association Studies of HIV-1 Host Control in Ethnically Diverse Chinese Populations.	HIV-1 viral setpoint	326 Han Chinese ancestry cases, 58 Dai Chinese ancestry cases, 40 Jingpo Chinese ancestry cases, 83 Uygur Chinese ancestry cases, 11 Hui Chinese ancestry cases, 20 East Asian cases	NA	6p21.33	HLA-C, HLA-B	rs2442719-A	0.4161	8E-7	(Han)	0.3298	unit decrease	Illumina [up to 528294]	N
605	chr6_mann_hap4	2667015	2667016	rs2523616	30850646	Tziotzios C	2019-03-08	Nat Commun	Genome-wide association study in frontal fibrosing alopecia identifies four susceptibility loci including HLA-B*07:02.	Frontal fibrosing alopecia	1,016 European ancestry cases, 4,145 European ancestry controls		6p21.33	HLA-B	rs2523616-T	0.19	8E-119		4.73	[4.15-5.39]	Illumina [~ 8000000] (imputed)	N
605	chr6_mann_hap4	2667072	2667073	rs117598591	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	20,917 European ancestry cases, 440,906 European ancestry controls, 14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	6p21.33		rs117598591-A	NR	3E-20		0.2416	[0.19-0.29] unit increase	Affymetrix, Illumina [25841367] (imputed)	N
605	chr6_mann_hap4	2667096	2667097	rs11753309	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Non-albumin protein levels	98,538 Japanese ancestry individuals	NA	6p21.33	HLA-C, HLA-B	rs11753309-?	NR	1E-12		0.07675	[0.056-0.098] unit increase novel	Illumina [6108953] (imputed)	N
605	chr6_mann_hap4	2667096	2667097	rs11753309	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Albumin-globulin ratio	98,626 Japanese ancestry individuals	NA	6p21.33	HLA-C, HLA-B	rs11753309-?	NR	4E-14		0.08157	[0.06-0.103] unit decrease novel	Illumina [6108953] (imputed)	N
605	chr6_mann_hap4	2667105	2667106	rs2523614	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Naive CD4-CD8- T cell %T cell	3,427 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs2523614-C	0.26364	6E-9		0.1522	[0.1-0.2] unit decrease	Illumina [18349913] (imputed)	N
605	chr6_mann_hap4	2667105	2667106	rs2523614	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	6p21.33	HLA-C, MICA	rs2523614-T	0.689	6E-10		0.0237097	[0.016-0.031] unit increase	Illumina [13519193] (imputed)	N
605	chr6_mann_hap4	2667105	2667106	rs2523614	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.33	HLA-C, MICA	rs2523614-T	0.689	2E-7	(men)	0.0253993	[0.016-0.035] unit increase	Illumina [13520550] (imputed)	N
605	chr6_mann_hap4	2667113	2667114	rs62396264	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs62396264-G	NR	1E-8		0.042766	[0.028-0.057] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_mann_hap4	2667300	2667301	rs35735140	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	6p21.33	XXbac-BPG248L24.12	rs35735140-C	0.0632	9E-33		0.08825474	[0.074-0.103] unit increase	Affymetrix [~ 2500000] (imputed)	N
605	chr6_mann_hap4	2667322	2667322	rs35506574	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs35506574-CTGA	NR	6E-13		0.0203427	[0.015-0.026] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_mann_hap4	2667322	2667322	rs35506574	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-B	rs35506574-CTGA	NR	6E-10		0.0194754	[0.013-0.026] unit increase	Affymetrix [323858] (imputed)	N
605	chr6_mann_hap4	2667322	2667322	rs35506574	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs35506574-CTGA	NR	2E-12		0.0198288	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_mann_hap4	2667322	2667322	rs35506574	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HLA-B	rs35506574-CTGA	NR	6E-9		0.0183276	[0.012-0.024] unit increase	Affymetrix [127266] (imputed)	N
605	chr6_mann_hap4	2667322	2667322	rs35506574	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs35506574-CTGA	NR	2E-15		0.0226739	[0.017-0.028] unit increase	Affymetrix [321169] (imputed)	N
605	chr6_mann_hap4	2667665	2667666	rs2596501	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs2596501-T	NR	2E-16		0.0231594	[0.018-0.029] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_mann_hap4	2667665	2667666	rs2596501	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs2596501-T	NR	3E-15		0.0222583	[0.017-0.028] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_mann_hap4	2667665	2667666	rs2596501	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs2596501-T	NR	7E-10		0.0173579	[0.012-0.023] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_mann_hap4	2667665	2667666	rs2596501	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-B	rs2596501-T	NR	5E-11		0.0201678	[0.014-0.026] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_mann_hap4	2667665	2667666	rs2596501	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs2596501-T	NR	1E-14		0.0219866	[0.016-0.028] unit increase	Affymetrix [321169] (imputed)	N
605	chr6_mann_hap4	2667721	2667722	rs2596500	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in ever smokers	23,223 European ancestry cases,  16,964 European ancestry controls	NA	6p21.33	HLA-B	rs2596500-C	0.110809826	2E-15		1.2094321	[1.153908741-1.267627282]	Illumina [10439017] (imputed)	N
605	chr6_mann_hap4	2667721	2667722	rs2596500	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	6p21.33	NR	rs2596500-A	NR	8E-20		1.18	[NR]	Illumina [7158791] (imputed)	N
605	chr6_mann_hap4	2667781	2667782	rs9266095	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs9266095-G	NR	1E-9		0.0211771	[0.014-0.028] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_mann_hap4	2667861	2667862	rs12196740	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.33	NR	rs12196740-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
605	chr6_mann_hap4	2667879	2667880	rs9378247	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-B	rs9378247-A	NR	3E-11		0.0265014	[0.019-0.034] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_mann_hap4	2667978	2667979	rs2844584	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	6p21.33	NR	rs2844584-?	NR	2E-21	(conditional)			Affymetrix [15688218] (imputed)	N
605	chr6_mann_hap4	2668111	2668112	rs3177747	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PRSS57	5,358 Icelandic ancestry individuals	NA	6p21.33		rs3177747-A	0.01609	7E-71		1.26085	[1.12-1.4] unit increase	Illumina [7506463] (imputed)	N
605	chr6_mann_hap4	2670661	2670661	rs760342210	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	74,970 East Asian ancestry individuals	NA	6p21.33		rs760342210-GCC	0.376979	5E-8		0.0270505	[0.017-0.037] unit increase	Illumina [13465896] (imputed)	N
605	chr6_mann_hap4	2671776	2671777	rs9266229	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.33	NR	rs9266229-C	NR	4E-9		0.023	unit decrease	Affymetrix [at least 7091467] (imputed)	N
605	chr6_mann_hap4	2671776	2671777	rs9266229	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.33	NR	rs9266229-C	0.53	1E-9	(EA)	0.026	unit decrease	Affymetrix [at least 7091467] (imputed)	N
605	chr6_mann_hap4	2671776	2671777	rs9266229	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.33	NR	rs9266229-C	NR	3E-10		0.027	unit decrease	Affymetrix [at least 7091467] (imputed)	N
605	chr6_mann_hap4	2671776	2671777	rs9266229	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.33	NR	rs9266229-C	0.53	2E-10	(EA)	0.03	unit decrease	Affymetrix [at least 7091467] (imputed)	N
605	chr6_mann_hap4	2671776	2671777	rs9266229	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.33	NR	rs9266229-C	NR	1E-6		0.021	unit decrease	Affymetrix [at least 7091467] (imputed)	N
605	chr6_mann_hap4	2671776	2671777	rs9266229	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.33	NR	rs9266229-C	0.53	1E-6	(EA)	0.023	unit decrease	Affymetrix [at least 7091467] (imputed)	N
605	chr6_mann_hap4	2671794	2671795	rs9266230	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	6p21.33	NR	rs9266230-G	0.359851	1E-35		0.0263621	[0.022-0.031] unit decrease	NR [NR]	N
605	chr6_mann_hap4	2671895	2671896	rs114777460	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mumps	31,227 European ancestry cases, 54,153 European ancestry controls	NA	6p21.33	NR	rs114777460-?	NR	4E-6		0.1022	[0.058-0.146] unit decrease	Illumina [at least 560000] (imputed)	N
605	chr6_mann_hap4	2671973	2671974	rs9266237	31527586	An J	2019-09-16	Nat Commun	Gastroesophageal reflux GWAS identifies risk loci that also associate with subsequent severe esophageal diseases.	Gastroesophageal reflux disease	80,265 European and unknown ancestry cases, 305,011 European and unknown ancestry controls	NA	6p21.33	MICA, HLA-B	rs9266237-C	NR	2E-11		1.0409149	[1.03-1.05]	Affymetrix, Illumina [up to 7600000] (imputed)	N
605	chr6_mann_hap4	2672144	2672145	rs9266244	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs9266244-G	NR	2E-20		0.0316292	[0.025-0.038] unit decrease	Affymetrix [323858] (imputed)	N
605	chr6_mann_hap4	2672144	2672145	rs9266244	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	6p21.33	HLA-B	rs9266244-A	0.7077	1E-94		0.0427	[0.039-0.047] unit decrease	Affymetrix [18391927] (imputed)	N
605	chr6_mann_hap4	2672154	2672155	rs9266245	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs9266245-A	NR	1E-17		0.0293064	[0.023-0.036] unit decrease	Affymetrix [127266] (imputed)	N
605	chr6_mann_hap4	2672154	2672155	rs9266245	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs9266245-A	NR	4E-9		0.0199304	[0.013-0.027] unit decrease	Affymetrix [323858] (imputed)	N
605	chr6_mann_hap4	2672154	2672155	rs9266245	30003630	Minica CC	2018-07-13	Addiction	GENOME-WIDE ASSOCIATION META-ANALYSIS OF AGE AT FIRST CANNABIS USE.	Cannabis use (age at onset)	24,953 European ancestry individuals	3,735 European ancestry individuals	6p21.33	NR	rs9266245-A	0.2655	5E-6		0.06	[0.033-0.087] unit decrease	Affymetrix, Illumina, Perlegen [6163759] (imputed)	N
605	chr6_mann_hap4	2672197	2672198	rs74618856	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs74618856-T	NR	3E-13		0.0210177	[0.015-0.027] unit decrease	Affymetrix [321169] (imputed)	N
605	chr6_mann_hap4	2672210	2672211	rs9266248	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs9266248-G	NR	5E-11		0.0206568	[0.014-0.027] unit decrease	Affymetrix [323858] (imputed)	N
605	chr6_mann_hap4	2672210	2672211	rs9266248	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs9266248-G	NR	6E-10		0.0194387	[0.013-0.026] unit decrease	Affymetrix [127266] (imputed)	N
605	chr6_mann_hap4	2672244	2672245	rs9266250	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs9266250-A	NR	5E-20		0.0288475	[0.023-0.035] unit increase	Affymetrix [323123] (imputed)	N
605	chr6_mann_hap4	2672299	2672300	rs9266253	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs9266253-G	NR	8E-10		0.021803	[0.015-0.029] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_mann_hap4	2672299	2672300	rs9266253	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs9266253-G	NR	6E-10		0.0219864	[0.015-0.029] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_mann_hap4	2672303	2672304	rs28694041	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs28694041-G	NR	4E-17		0.0237224	[0.018-0.029] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_mann_hap4	2672332	2672333	rs9266255	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6p21.33		rs9266255-G	0.51289	7E-12		0.0273638	[0.02-0.035] unit increase	NR [11722792] (imputed)	N
605	chr6_mann_hap4	2672332	2672333	rs9266255	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs9266255-A	NR	1E-9		0.0189485	[0.013-0.025] unit increase	Affymetrix [323858] (imputed)	N
605	chr6_mann_hap4	2672332	2672333	rs9266255	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs9266255-A	NR	2E-20		0.0284303	[0.022-0.034] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_mann_hap4	2672332	2672333	rs9266255	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	6p21.33	HLA-B	rs9266255-A	0.485918	3E-10		0.015893243	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
605	chr6_mann_hap4	2672338	2672339	rs9266257	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	6p21.33		rs9266257-G	0.332679	3E-14		0.0320363	[0.024-0.04] unit increase	NR [11722792] (imputed)	N
605	chr6_mann_hap4	2672338	2672339	rs9266257	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	6p21.33		rs9266257-G	0.332679	2E-18		0.036957	[0.029-0.045] unit increase	NR [11722792] (imputed)	N
605	chr6_mann_hap4	2672338	2672339	rs9266257	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	6p21.33	Intergenic	rs9266257-G	0.2867	3E-10		0.0158	[0.011-0.021] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
605	chr6_mann_hap4	2672338	2672339	rs9266257	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	6p21.33	Intergenic	rs9266257-C	0.6642	1E-12	(MTAG)	0.0175	[0.013-0.022] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
605	chr6_mann_hap4	2672533	2672534	rs9266271	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.33		rs9266271-T	0.645	8E-27				Affymetrix [10369434] (imputed)	N
605	chr6_mann_hap4	2672533	2672534	rs9266271	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs9266271-C	NR	6E-18		0.0254246	[0.02-0.031] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_mann_hap4	2672533	2672534	rs9266271	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs9266271-C	NR	6E-17		0.0246745	[0.019-0.03] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_mann_hap4	2672533	2672534	rs9266271	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs9266271-C	NR	1E-12		0.0209457	[0.015-0.027] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_mann_hap4	2672533	2672534	rs9266271	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs9266271-C	NR	3E-8		0.0177807	[0.011-0.024] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_mann_hap4	2672533	2672534	rs9266271	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs9266271-C	NR	2E-13		0.0220232	[0.016-0.028] unit increase	Affymetrix [321169] (imputed)	N
605	chr6_mann_hap4	2672534	2672535	rs62396273	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs62396273-T	NR	1E-15		0.0313037	[0.024-0.039] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_mann_hap4	2672534	2672535	rs62396273	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs62396273-T	NR	2E-8		0.023758	[0.015-0.032] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_mann_hap4	2672582	2672583	rs73390208	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	6p21.33		rs73390208-C	0.728652	1E-9		0.028278	[0.019-0.037] unit decrease	NR [11722792] (imputed)	N
605	chr6_mann_hap4	2672582	2672583	rs73390208	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs73390208-T	NR	2E-8		0.0177817	[0.012-0.024] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_mann_hap4	2672617	2672618	rs4947311	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hypothyroidism	1,114 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	6p21.33		rs4947311-T	0.840267659	5E-8		0.32545814	[0.21-0.44] unit increase	Illumina [13429045] (imputed)	N
605	chr6_mann_hap4	2672617	2672618	rs4947311	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs4947311-T	NR	3E-8		0.0173305	[0.011-0.023] unit increase	Affymetrix [127266] (imputed)	N
605	chr6_mann_hap4	2672617	2672618	rs4947311	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	6p21.33	HLA-B	rs4947311-T	0.491335	1E-26		0.023138076	[0.019-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
605	chr6_mann_hap4	2672617	2672618	rs4947311	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	6p21.33	HLA-B	rs4947311-T	0.4917	6E-26		0.03719869	[0.03-0.044] unit decrease	Affymetrix [~ 2500000] (imputed)	N
605	chr6_mann_hap4	2672638	2672638	rs112261624	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p21.33	HLA-B	rs112261624-ATTG	0.126731	3E-11		0.025527913	[0.018-0.033] unit increase	Affymetrix [93095623] (imputed)	N
605	chr6_mann_hap4	2672674	2672675	rs2596474	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs2596474-G	NR	1E-8		0.0167607	[0.011-0.023] unit increase	Affymetrix [321169] (imputed)	N
605	chr6_mann_hap4	2672702	2672703	rs9405084	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs9405084-T	NR	1E-13		0.0243425	[0.018-0.031] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_mann_hap4	2672702	2672703	rs9405084	32488134	Auckland K	2020-06-02	Sci Rep	The Human Leukocyte Antigen Locus and Rheumatic Heart Disease Susceptibility in South Asians and Europeans.	Rheumatic heart disease	510 Northern Indian cases, 344 Northern Indian controls, 162 Fijian Indian cases, 147 Fijian Indian controls	150 European ancestry cases, 1,309 European ancestry controls	6p21.33	HLA-B	rs9405084-?		3E-6		1.36	[1.19-1.55]	Illumina [6925553] (imputed)	N
605	chr6_mann_hap4	2672702	2672703	rs9405084	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	Composite immunoglobulin trait (IgA/IgM)	14,183 Icelandic ancestry individuals	2,146 Swedish ancestry individuals	6p21.33	HLA-B	rs9405084-T	0.3546	8E-13		0.09	NR SD units decrease	Illumina [21568490] (imputed)	N
605	chr6_mann_hap4	2672723	2672724	rs9266276	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	6p21.33	NR	rs9266276-?	NR	1E-10		0.0815	[0.057-0.106] unit decrease	Illumina [at least 560000] (imputed)	N
605	chr6_mann_hap4	2672740	2672741	rs9378248	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6p21.33		rs9378248-G	0.658186	5E-12		0.0289275	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
605	chr6_mann_hap4	2672740	2672741	rs9378248	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to monounsaturated fatty acids	115,006 European ancestry individuals	NA	6p21.33		rs9378248-G	0.658178	1E-9		0.0253981	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
605	chr6_mann_hap4	2672740	2672741	rs9378248	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of monounsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	6p21.33		rs9378248-G	0.658178	5E-12		0.0287948	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
605	chr6_mann_hap4	2672740	2672741	rs9378248	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	6p21.33		rs9378248-G	0.658186	6E-9		0.0251651	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
605	chr6_mann_hap4	2672740	2672741	rs9378248	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6p21.33		rs9378248-G	0.658186	2E-15		0.0323775	[0.024-0.04] unit increase	NR [11722792] (imputed)	N
605	chr6_mann_hap4	2672740	2672741	rs9378248	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6p21.33		rs9378248-G	0.658186	3E-12		0.0285178	[0.021-0.036] unit increase	NR [11722792] (imputed)	N
605	chr6_mann_hap4	2672740	2672741	rs9378248	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6p21.33		rs9378248-G	0.658186	2E-15		0.0327076	[0.025-0.041] unit increase	NR [11722792] (imputed)	N
605	chr6_mann_hap4	2672740	2672741	rs9378248	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6p21.33		rs9378248-G	0.658186	5E-12		0.028241	[0.02-0.036] unit increase	NR [11722792] (imputed)	N
605	chr6_mann_hap4	2672740	2672741	rs9378248	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs9378248-A	NR	3E-12		0.0207417	[0.015-0.027] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_mann_hap4	2672740	2672741	rs9378248	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	6p21.33	HLA-B	rs9378248-G	0.657666	3E-54		0.0324826	[0.028-0.037] unit decrease	Affymetrix [NR] (imputed)	N
605	chr6_mann_hap4	2672740	2672741	rs9378248	31589552	Lind L	2019-10-07	Metab Syndr Relat Disord	Genome-Wide Association Study of the Metabolic Syndrome in UK Biobank.	Metabolic syndrome	291,107 European ancestry individuals	NA	6p21.33	HLA-B	rs9378248-A	0.339668	2E-10		0.0440684	[0.031-0.058] unit increase	Affymetrix [9463307] (imputed)	N
605	chr6_mann_hap4	2672740	2672741	rs9378248	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	6p21.33	Intergenic	rs9378248-A	0.386	7E-10	(MTAG)	0.0105	[0.0072-0.0138] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
605	chr6_mann_hap4	2672740	2672741	rs9378248	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6p21.33	Intergenic	rs9378248-A	0.3659	8E-10	(MTAG)	0.0086	[0.0059-0.0113] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
605	chr6_mann_hap4	2673062	2673063	rs9266277	35074870	Chia R	2022-02-01	Proc Natl Acad Sci U S A	Identification of genetic risk loci and prioritization of genes and pathways for myasthenia gravis: a genome-wide association study.	Myasthenia gravis	1,873 European ancestry cases, 36,370 European ancestry controls	7,412 European ancestry individuals	6p21.33		rs9266277-A	0.347	7E-10		1.29	[1.2-1.4]	Illumina [24006246] (imputed)	N
605	chr6_mann_hap4	2673374	2673375	rs2395475	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs2395475-G	NR	1E-18		0.0259014	[0.02-0.032] unit decrease	Affymetrix [321169] (imputed)	N
605	chr6_mann_hap4	2673414	2673415	rs2523591	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p21.33	HLA-B	rs2523591-G	0.58	2E-27		1.14	[1.13-1.16]	Illumina [at least 560000] (imputed)	N
605	chr6_mann_hap4	2673488	2673489	rs116666910	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	6p21.33	HLA-B	rs116666910-A	0.042838	3E-36		0.07363684	[0.062-0.085] unit increase	Affymetrix [93095623] (imputed)	N
605	chr6_mann_hap4	2673518	2673519	rs2523590	35215271	Almandil NB	2022-01-27	Pharmaceuticals (Basel)	Integration of Transcriptome and Exome Genotyping Identifies Significant Variants with Autism Spectrum Disorder.	Autism spectrum disorder	70 Arab ancestry cases, 132 Arab ancestry controls	NA	6p21.33	NA	rs2523590-G	0.4059	2E-6		0.2661	[0.1511-0.4689]	Illumina [243345]	N
605	chr6_mann_hap4	2673518	2673519	rs2523590	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Anxiety	at least 23,606 European ancestry cases, at least 113,351 European ancestry controls	624,615 European ancestry cases, 1,310,854 European ancestry controls	6p21.33	XXbac, BPG248L24.12	rs2523590-T	0.3002	2E-17		0.020998826	[0.015-0.027] unit decrease	NR [9417325] (imputed)	N
605	chr6_mann_hap4	2673518	2673519	rs2523590	21051598	Pereyra F	2010-11-04	Science	The major genetic determinants of HIV-1 control affect HLA class I peptide presentation.	HIV-1 control	516 European cases, 1,196 European controls, 341 African American cases, 892 African American controls, 117 Hispanic cases, 560 Hispanic controls	NA	6p21.33	HLA-B	rs2523590-C	0.164	2E-13	(AA)	2.4	[NR]	Illumina [1384048] (imputed)	N
605	chr6_mann_hap4	2673632	2673633	rs2249935	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs2249935-A	NR	2E-11		0.02495	[0.018-0.032] unit decrease	Affymetrix [323858] (imputed)	N
605	chr6_mann_hap4	2673632	2673633	rs2249935	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs2249935-A	NR	2E-10		0.0236711	[0.016-0.031] unit decrease	Affymetrix [127266] (imputed)	N
605	chr6_mann_hap4	2673632	2673633	rs2249935	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs2249935-A	NR	6E-9		0.0213066	[0.014-0.028] unit increase	Affymetrix [323123] (imputed)	N
605	chr6_mann_hap4	2673632	2673633	rs2249935	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	6p21.33	HLA-B	rs2249935-A	0.226813	5E-14		0.022285966	[0.016-0.028] unit increase	Affymetrix [93095623] (imputed)	N
605	chr6_mann_hap4	2673788	2673789	rs2523589	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2523589-G	0.504575	7E-11		0.0266546	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
605	chr6_mann_hap4	2673788	2673789	rs2523589	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CDH7	5,355 Icelandic ancestry individuals	NA	6p21.33		rs2523589-G	0.4994	3E-12		0.128281	[0.092-0.164] unit increase	Illumina [7506463] (imputed)	N
605	chr6_mann_hap4	2673788	2673789	rs2523589	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs2523589-T	NR	4E-15		0.0220143	[0.017-0.028] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_mann_hap4	2673788	2673789	rs2523589	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs2523589-T	NR	5E-9		0.0182205	[0.012-0.024] unit increase	Affymetrix [323858] (imputed)	N
605	chr6_mann_hap4	2673788	2673789	rs2523589	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs2523589-T	NR	8E-14		0.0209932	[0.015-0.026] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_mann_hap4	2673788	2673789	rs2523589	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs2523589-T	NR	3E-10		0.0176998	[0.012-0.023] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_mann_hap4	2673788	2673789	rs2523589	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs2523589-T	NR	2E-15		0.0225538	[0.017-0.028] unit increase	Affymetrix [321169] (imputed)	N
605	chr6_mann_hap4	2673788	2673789	rs2523589	33608531	Wu Y	2021-02-19	Nat Commun	GWAS of peptic ulcer disease implicates Helicobacter pylori infection, other gastrointestinal disorders and depression.	Gastroesophageal reflux disease	54,854 European ancestry cases, 401,473 European ancestry controls	NA	6p21.33	NR	rs2523589-G	0.5	5E-13		0.95	[NR]	NR [8546065] (imputed)	N
605	chr6_mann_hap4	2673788	2673789	rs2523589	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (salicylic acid and derivatives)	61,583 European ancestry cases, 50,427 European ancestry controls	NA	6p21.33	HLA-B	rs2523589-T	0.495166	2E-8		0.044395193	[0.029-0.06] unit increase	Affymetrix [7288503] (imputed)	N
605	chr6_mann_hap4	2673788	2673789	rs2523589	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.33		rs2523589-T	0.5109049999999999	2E-54		1.0677866	[1.06-1.08]	Affymetrix, Illumina [9851866] (imputed)	N
605	chr6_mann_hap4	2673854	2673855	rs2523587	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	6p21.33	Intergenic	rs2523587-T	0.3377	3E-8	(MTAG)	0.0105	[0.0068-0.0142] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
605	chr6_mann_hap4	2674114	2674115	rs1811197	27157822	Hallberg P	2016-05-03	Lancet Diabetes Endocrinol	Genetic variants associated with antithyroid drug-induced agranulocytosis: a genome-wide association study in a European population.	Non-chemotherapy drug induced agranulocytosis	222 European ancestry cases, 12 cases, 5,170 European ancestry controls	NA	6p21.33	NR	rs1811197-?	NR	9E-13	(adjusted for rs114291795)	2.4	[1.89-3.06]	Illumina [9380034] (imputed)	N
605	chr6_mann_hap4	2674123	2674124	rs116812356	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	6p21.33	HLA-B	rs116812356-C	0.084787	1E-13		0.029957736	[0.022-0.038] unit increase	Affymetrix [93095623] (imputed)	N
605	chr6_mann_hap4	2674155	2674156	rs9378249	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p21.33	NR	rs9378249-T	0.936677	4E-192				Affymetrix, Illumina [17210439] (imputed)	N
605	chr6_mann_hap4	2674155	2674156	rs9378249	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	6p21.33	NR	rs9378249-T	0.935134	6E-196		0.116523	[0.11-0.12] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
605	chr6_mann_hap4	2674155	2674156	rs9378249	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	6p21.33	HLA-B	rs9378249-G	0.0655	1E-53		0.112675	[0.098-0.127] unit decrease	Affymetrix [~ 2500000] (imputed)	N
605	chr6_mann_hap4	2674155	2674156	rs9378249	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	6p21.33	HLA-B	rs9378249-G	0.0649	7E-35		0.08896168	[0.075-0.103] unit increase	Affymetrix [~ 2500000] (imputed)	N
605	chr6_mann_hap4	2674155	2674156	rs9378249	21254220	Jiang Y	2011-02-01	Genet Epidemiol	Propensity score-based nonparametric test revealing genetic variants underlying bipolar disorder.	Bipolar disorder	1,868 European ancestry cases, 2,938 European ancestry controls	NA	6p21.33	NR	rs9378249-?	NR	1E-8	(addtive)			Affymetrix [NR]	N
605	chr6_mann_hap4	2674177	2674178	rs2596477	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p21.33	NR	rs2596477-A	0.124	2E-14	(IFNAR2_of_CD20p)			Illumina [5084123] (imputed)	N
605	chr6_mann_hap4	2674196	2674197	rs116010992	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in IDL	115,082 European ancestry individuals	NA	6p21.33		rs116010992-G	0.944836	2E-8		0.0511498	[0.033-0.069] unit increase	NR [11722792] (imputed)	N
605	chr6_mann_hap4	2674196	2674197	rs116010992	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in IDL	115,082 European ancestry individuals	NA	6p21.33		rs116010992-G	0.944836	7E-9		0.0521223	[0.034-0.07] unit increase	NR [11722792] (imputed)	N
605	chr6_mann_hap4	2674196	2674197	rs116010992	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in IDL	115,082 European ancestry individuals	NA	6p21.33		rs116010992-G	0.944836	7E-9		0.0521034	[0.034-0.07] unit increase	NR [11722792] (imputed)	N
605	chr6_mann_hap4	2674211	2674212	rs28695590	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs28695590-C	NR	1E-9		0.0254929	[0.017-0.034] unit increase	Affymetrix [323858] (imputed)	N
605	chr6_mann_hap4	2674211	2674212	rs28695590	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs28695590-C	NR	2E-9		0.0254506	[0.017-0.034] unit increase	Affymetrix [127266] (imputed)	N
605	chr6_mann_hap4	2674349	2674350	rs2523583	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	6p21.33	XXbac-BPG248L24.12	rs2523583-A	0.7315	5E-7		0.0528	[0.032-0.073] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
605	chr6_mann_hap4	2674359	2674360	rs7767033	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p21.33		rs7767033-C	0.911783	6E-11		0.0460216	[0.032-0.06] unit decrease	NR [11722792] (imputed)	N
605	chr6_mann_hap4	2674359	2674360	rs7767033	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p21.33		rs7767033-C	0.911783	3E-10		0.0446058	[0.031-0.058] unit increase	NR [11722792] (imputed)	N
605	chr6_mann_hap4	2674971	2674972	rs2523579	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs2523579-T	NR	5E-20		0.0268404	[0.021-0.033] unit increase	Affymetrix [321016] (imputed)	N
605	chr6_mann_hap4	2674971	2674972	rs2523579	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs2523579-T	NR	6E-23		0.0313944	[0.025-0.038] unit increase	Affymetrix [323123] (imputed)	N
605	chr6_mann_hap4	2674996	2674997	rs2523578	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.33	XXbac-BPG248L24.12	rs2523578-A	0.735	6E-12		0.0561	[0.04-0.072] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
605	chr6_mann_hap4	2675210	2675211	rs9266289	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.33	NR	rs9266289-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
605	chr6_mann_hap4	2675340	2675341	rs7772305	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs7772305-G	NR	1E-17		0.0277083	[0.021-0.034] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_mann_hap4	2675340	2675341	rs7772305	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs7772305-G	NR	4E-10		0.0221253	[0.015-0.029] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_mann_hap4	2675442	2675443	rs2523573	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	6p21.33	NR	rs2523573-C	0.083499	2E-9		0.077368595	[0.052-0.103] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
605	chr6_mann_hap4	2675442	2675443	rs2523573	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	6p21.33	NR	rs2523573-C	0.083499	3E-11		0.07532035	[0.053-0.098] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
605	chr6_mann_hap4	2675483	2675484	rs114029601	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p21.33		rs114029601-?	NR	2E-13		0.0823935	[0.06-0.104] unit increase	Affymetrix [20259828] (imputed)	N
605	chr6_mann_hap4	2675483	2675484	rs114029601	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs114029601-T	0.024	1E-175	(alpha-2-macroglobulin receptor-associated protein, LRPAP1.3640.14.3)	2.11	[1.97-2.25] unit increase	Affymetrix [10572788] (imputed)	N
605	chr6_mann_hap4	2675483	2675484	rs114029601	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs114029601-T	0.024	1E-132	(alpha-2-macroglobulin receptor-associated protein, LRPAP1.8829.4.3)	1.88	[1.72-2.04] unit increase	Affymetrix [10572788] (imputed)	N
605	chr6_mann_hap4	2675547	2675548	rs7772614	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs7772614-A	NR	2E-17		0.0245966	[0.019-0.03] unit decrease	Affymetrix [319769] (imputed)	N
605	chr6_mann_hap4	2675547	2675548	rs7772614	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs7772614-A	NR	4E-16		0.0235888	[0.018-0.029] unit decrease	Affymetrix [319769] (imputed)	N
605	chr6_mann_hap4	2675547	2675548	rs7772614	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs7772614-A	NR	9E-15		0.0224619	[0.017-0.028] unit increase	Affymetrix [321016] (imputed)	N
605	chr6_mann_hap4	2675547	2675548	rs7772614	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs7772614-A	NR	3E-22		0.0306127	[0.024-0.037] unit increase	Affymetrix [323123] (imputed)	N
605	chr6_mann_hap4	2675547	2675548	rs7772614	32358547	Persyn E	2020-05-01	Nat Commun	Genome-wide association study of MRI markers of cerebral small vessel disease in 42,310 participants.	White matter integrity (mean diffusivity)	17,467 European ancestry individuals	NA	6p21.33	HLA-B, HLA-S	rs7772614-A	0.379354	8E-10		0.272022	[0.19-0.36] unit decrease	Affymetrix [NR] (imputed)	N
605	chr6_mann_hap4	2675589	2675590	rs2428493	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.33		rs2428493-C	0.59	3E-29				Affymetrix [10369434] (imputed)	N
605	chr6_mann_hap4	2675589	2675590	rs2428493	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p21.33		rs2428493-C	0.59	2E-11				Affymetrix [10369434] (imputed)	N
605	chr6_mann_hap4	2675589	2675590	rs2428493	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs2428493-A	NR	1E-8		0.0162701	[0.011-0.022] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_mann_hap4	2675589	2675590	rs2428493	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs2428493-A	NR	2E-8		0.0160422	[0.01-0.022] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_mann_hap4	2675589	2675590	rs2428493	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs2428493-A	NR	3E-8		0.0172826	[0.011-0.023] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_mann_hap4	2675589	2675590	rs2428493	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs2428493-A	NR	4E-8		0.0158728	[0.01-0.022] unit increase	Affymetrix [321169] (imputed)	N
605	chr6_mann_hap4	2675745	2675746	rs2596544	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs2596544-A	NR	4E-11		0.0250182	[0.018-0.032] unit decrease	Affymetrix [323858] (imputed)	N
605	chr6_mann_hap4	2675745	2675746	rs2596544	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs2596544-A	NR	2E-10		0.0239529	[0.017-0.031] unit decrease	Affymetrix [127266] (imputed)	N
605	chr6_mann_hap4	2675745	2675746	rs2596544	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.33	NR	rs2596544-?	NR	7E-14				Affymetrix [~ 8270000] (imputed)	N
605	chr6_mann_hap4	2675819	2675820	rs2428491	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs2428491-T	NR	7E-9		0.018086	[0.012-0.024] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_mann_hap4	2675819	2675820	rs2428491	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs2428491-T	NR	3E-8		0.0160184	[0.01-0.022] unit increase	Affymetrix [321169] (imputed)	N
605	chr6_mann_hap4	2675920	2675921	rs76518703	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.33		rs76518703-G	0.051012999999999975	4E-21		1.0960608	[1.08-1.11]	Affymetrix, Illumina [9851866] (imputed)	N
605	chr6_mann_hap4	2675932	2675933	rs62396280	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p21.33		rs62396280-G	0.938983	7E-13		0.0589889	[0.043-0.075] unit increase	NR [11722792] (imputed)	N
605	chr6_mann_hap4	2675932	2675933	rs62396280	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p21.33		rs62396280-G	0.938983	3E-13		0.0597272	[0.044-0.076] unit increase	NR [11722792] (imputed)	N
605	chr6_mann_hap4	2675932	2675933	rs62396280	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	6p21.33		rs62396280-G	0.938983	5E-13		0.0604292	[0.044-0.077] unit increase	NR [11722792] (imputed)	N
605	chr6_mann_hap4	2676096	2676097	rs2596547	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MICB	5,339 Icelandic ancestry individuals	NA	6p21.33		rs2596547-T	0.08274	1E-46		0.447301	[0.39-0.51] unit decrease	Illumina [7506463] (imputed)	N
605	chr6_mann_hap4	2676145	2676146	rs2523571	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Sjogren's syndrome	1,296 European ancestry cases, 482,717 European ancestry controls, 303 East Asian ancestry cases, 175,599 East Asian ancestry controls	NA	6p21.33		rs2523571-A	NR	6E-28		0.709	[0.58-0.84] unit increase	Affymetrix, Illumina [25844664] (imputed)	N
605	chr6_mann_hap4	2676188	2676189	rs2523570	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs2523570-T	NR	1E-9		0.0207915	[0.014-0.027] unit increase	Affymetrix [321114] (imputed)	N
605	chr6_mann_hap4	2676188	2676189	rs2523570	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	HLA-B, XXbac-BPG248L24.12, HLA-C, DHFRP2, RNU6-283P	rs2523570-T	0.1732125	3E-22	(EA, MHC class I polypeptide-related sequence A)	0.5698	[0.46-0.68] unit increase	Affymetrix [509946]	N
605	chr6_mann_hap4	2676469	2676470	rs2523567	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	DHFRP2	rs2523567-G	NR	1E-8		0.019102	[0.013-0.026] unit decrease	Affymetrix [321169] (imputed)	N
605	chr6_mann_hap4	2677072	2677073	rs2523562	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	6p21.33		rs2523562-C	0.75	5E-23				Affymetrix [10369434] (imputed)	N
605	chr6_mann_hap4	2677072	2677073	rs2523562	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	6p21.33	DHFRP2	rs2523562-T	0.248438	2E-53		0.043959104	[0.038-0.05] unit decrease	Affymetrix [93095623] (imputed)	N
605	chr6_mann_hap4	2677072	2677073	rs2523562	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p21.33	NR	rs2523562-T	0.231793	1E-216				Affymetrix, Illumina [23467995] (imputed)	N
605	chr6_mann_hap4	2677072	2677073	rs2523562	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	6p21.33	NR	rs2523562-T	0.245752	2E-218		0.068474	[0.064-0.073] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
605	chr6_mann_hap4	2677150	2677151	rs2523561	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	6p21.33		rs2523561-T	0.0841863	4E-21		0.22455621	[0.18-0.27] unit increase	Illumina [13427135] (imputed)	N
605	chr6_mann_hap4	2677242	2677243	rs9266329	34642315	Ferreiro-Iglesias A	2021-10-12	Nat Commun	Germline determinants of humoral immune response to HPV-16 protect against oropharyngeal cancer.	Human papilloma virus 16 positive oropharyngeal cancer	1,078 European ancestry cases, 5,256 European ancestry controls	NA	6p21.33		rs9266329-A	NR	1E-12		0.6064		Illumina [7574753] (imputed)	N
605	chr6_mann_hap4	2677423	2677424	rs2523559	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	145,505 East Asian ancestry individuals	NA	6p21.33		rs2523559-A	0.856226	1E-8		0.0270292	[0.018-0.036] unit decrease	Illumina [13477770] (imputed)	N
605	chr6_mann_hap4	2677491	2677492	rs2523558	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	DHFRP2	rs2523558-G	NR	5E-17		0.0239075	[0.018-0.029] unit decrease	Affymetrix [319769] (imputed)	N
605	chr6_mann_hap4	2677491	2677492	rs2523558	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	DHFRP2	rs2523558-G	NR	1E-15		0.022827	[0.017-0.028] unit decrease	Affymetrix [319769] (imputed)	N
605	chr6_mann_hap4	2677491	2677492	rs2523558	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	DHFRP2	rs2523558-G	NR	2E-18		0.025264	[0.02-0.031] unit decrease	Affymetrix [321169] (imputed)	N
605	chr6_mann_hap4	2677703	2677704	rs2523557	26190474	Dai Y	2015-07-20	Sci Rep	Performance of genetic risk factors in prediction of trichloroethylene induced hypersensitivity syndrome.	Trichloroethylene-induced hypersensitivity syndrome	98 Han Chinese ancestry cases, 98 Han Chinese ancestry trichloroethylene-tolerant controls	Up to 74 Han Chinese ancestry cases, up to 1,661 Han Chinese ancestry trichloroethylene-tolerant controls	6p21.33	HLA-B, MICA	rs2523557-C	0.13	9E-35		7.33	[5.34-10.07]	Illumina [1392644]	N
605	chr6_mann_hap4	2677946	2677947	rs4959062	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	DHFRP2	rs4959062-G	NR	7E-12		0.0197814	[0.014-0.025] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_mann_hap4	2677962	2677963	rs9266344	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antithrombotic agents)	67,653 European ancestry cases, 85,986 European ancestry controls, 54,220 East Asian ancestry cases, 124,506 East Asian ancestry controls	NA	6p21.33		rs9266344-C	NR	1E-15		0.0792	[0.06-0.099] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
605	chr6_mann_hap4	2678144	2678145	rs4959063	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol minus HDL-C levels	115,082 European ancestry individuals	NA	6p21.33		rs4959063-C	0.79261	4E-9		0.0298904	[0.02-0.04] unit decrease	NR [11722792] (imputed)	N
605	chr6_mann_hap4	2678144	2678145	rs4959063	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Remnant cholesterol (non-HDL, non-LDL -cholesterol)	115,082 European ancestry individuals	NA	6p21.33		rs4959063-C	0.79261	8E-10		0.0312509	[0.021-0.041] unit decrease	NR [11722792] (imputed)	N
605	chr6_mann_hap4	2678144	2678145	rs4959063	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in IDL	115,082 European ancestry individuals	NA	6p21.33		rs4959063-C	0.79261	2E-8		0.0277784	[0.018-0.037] unit decrease	NR [11722792] (imputed)	N
605	chr6_mann_hap4	2678144	2678145	rs4959063	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	6p21.33		rs4959063-C	0.79261	1E-9		0.0304695	[0.021-0.04] unit decrease	NR [11722792] (imputed)	N
605	chr6_mann_hap4	2678144	2678145	rs4959063	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	6p21.33		rs4959063-C	0.79261	2E-10		0.0327736	[0.023-0.043] unit decrease	NR [11722792] (imputed)	N
605	chr6_mann_hap4	2678144	2678145	rs4959063	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	6p21.33		rs4959063-C	0.79261	2E-10		0.0324692	[0.022-0.042] unit decrease	NR [11722792] (imputed)	N
605	chr6_mann_hap4	2678144	2678145	rs4959063	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small LDL particles	115,082 European ancestry individuals	NA	6p21.33		rs4959063-C	0.79261	1E-8		0.0290147	[0.019-0.039] unit decrease	NR [11722792] (imputed)	N
605	chr6_mann_hap4	2678144	2678145	rs4959063	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium LDL particles	115,082 European ancestry individuals	NA	6p21.33		rs4959063-C	0.79261	2E-8		0.0287151	[0.019-0.039] unit decrease	NR [11722792] (imputed)	N
605	chr6_mann_hap4	2678144	2678145	rs4959063	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large LDL particles	115,082 European ancestry individuals	NA	6p21.33		rs4959063-C	0.79261	6E-10		0.0315332	[0.022-0.042] unit decrease	NR [11722792] (imputed)	N
605	chr6_mann_hap4	2678144	2678145	rs4959063	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of LDL particles	115,082 European ancestry individuals	NA	6p21.33		rs4959063-C	0.79261	1E-9		0.0312676	[0.021-0.041] unit decrease	NR [11722792] (imputed)	N
605	chr6_mann_hap4	2678144	2678145	rs4959063	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium VLDL	115,082 European ancestry individuals	NA	6p21.33		rs4959063-C	0.79261	2E-9		0.0304401	[0.021-0.04] unit decrease	NR [11722792] (imputed)	N
605	chr6_mann_hap4	2678144	2678145	rs4959063	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in VLDL	115,082 European ancestry individuals	NA	6p21.33		rs4959063-C	0.79261	7E-11		0.0332965	[0.023-0.043] unit decrease	NR [11722792] (imputed)	N
605	chr6_mann_hap4	2678144	2678145	rs4959063	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	6p21.33		rs4959063-C	0.79261	1E-8		0.0281437	[0.018-0.038] unit decrease	NR [11722792] (imputed)	N
605	chr6_mann_hap4	2678144	2678145	rs4959063	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	6p21.33		rs4959063-C	0.79261	2E-10		0.0323143	[0.022-0.042] unit decrease	NR [11722792] (imputed)	N
605	chr6_mann_hap4	2678144	2678145	rs4959063	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein B levels	115,082 European ancestry individuals	NA	6p21.33		rs4959063-C	0.79261	1E-9		0.0311161	[0.021-0.041] unit decrease	NR [11722792] (imputed)	N
605	chr6_mann_hap4	2678275	2678276	rs2523554	33649182	Penova M	2021-03-01	Proc Natl Acad Sci U S A	Genome wide association study of HTLV-1-associated myelopathy/tropical spastic paraparesis in the Japanese population.	HTLV-1 associated myelopathy	731 Japanese ancestry cases, 846 Japanese ancestry controls	NA	6p21.33		rs2523554-C	0.11	3E-8		1.83	[1.48-2.27]	Illumina [126394]	N
605	chr6_mann_hap4	2678331	2678333	rs9279167	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	6p21.33	DHFRP2	rs9279167-G	0.2829	2E-24		0.04621161	[0.037-0.055] unit decrease	Affymetrix [~ 2500000] (imputed)	N
605	chr6_mann_hap4	2678402	2678403	rs2523552	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	6p21.33	DHFRP2	rs2523552-T	0.2263	1E-75		0.07846555	[0.07-0.087] unit decrease	Affymetrix [~ 2500000] (imputed)	N
605	chr6_mann_hap4	2678425	2678426	rs2844583	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	High density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	6p21.33	HLA-B, MICA	rs2844583-?		9E-10		0.0428	[0.029-0.057] unit increase	Illumina [31500000] (imputed)	N
605	chr6_mann_hap4	2678973	2678974	rs2844582	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	DHFRP2	rs2844582-T	NR	2E-10		0.022422	[0.016-0.029] unit increase	Affymetrix [321169] (imputed)	N
605	chr6_mann_hap4	2678974	2678975	rs2523548	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6p21.33	DHFRP2	rs2523548-A	0.433296	1E-28		0.029001132	[0.024-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
605	chr6_mann_hap4	2679186	2679187	rs9266359	25249183	Lu X	2014-09-23	Hum Mol Genet	Genome-wide association study in Chinese identifies novel loci for blood pressure and hypertension.	Systolic blood pressure	11,816 Han Chinese ancestry individuals	69,146 Han Chinese ancestry individuals	6p21.33	HLA-B	rs9266359-C	0.6	7E-6		0.44	[0.24-0.64] unit increase	Affymetrix, Illumina [2485448] (imputed)	N
605	chr6_mann_hap4	2679186	2679187	rs9266359	25249183	Lu X	2014-09-23	Hum Mol Genet	Genome-wide association study in Chinese identifies novel loci for blood pressure and hypertension.	Diastolic blood pressure	11,816 Han Chinese ancestry individuals	69,146 Han Chinese ancestry individuals	6p21.33	HLA-B	rs9266359-C	0.6	2E-7		0.29	[0.17-0.41] unit increase	Affymetrix, Illumina [2485448] (imputed)	N
605	chr6_mann_hap4	2679366	2679367	rs9266361	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (salicylic acid and derivatives)	41,461 East Asian ancestry cases, 137,265 East Asian ancestry controls	NA	6p21.33		rs9266361-T	0.812543574	5E-17		0.09066886	[0.07-0.112] unit decrease	Illumina [13429980] (imputed)	N
605	chr6_mann_hap4	2679366	2679367	rs9266361	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	6p21.33		rs9266361-T	0.812543574	4E-14		0.07905273	[0.059-0.1] unit decrease	Illumina [13134967] (imputed)	N
605	chr6_mann_hap4	2679366	2679367	rs9266361	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antithrombotic agents)	54,220 East Asian ancestry cases, 124,506 East Asian ancestry controls	NA	6p21.33		rs9266361-T	0.812543574	2E-16		0.08336314	[0.064-0.103] unit decrease	Illumina [13429980] (imputed)	N
605	chr6_mann_hap4	2679366	2679367	rs9266361	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	DHFRP2	rs9266361-T	NR	1E-16		0.026028	[0.02-0.032] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_mann_hap4	2679366	2679367	rs9266361	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.33		rs9266361-T	0.37995999999999996	5E-8		1.0236442	[1.01-1.03]	Affymetrix, Illumina [9851866] (imputed)	N
605	chr6_mann_hap4	2679367	2679368	rs2523546	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Squamous cell lung carcinoma	8,350 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	6p21.33	NR	rs2523546-A	NR	9E-8		1.24	[1.14-1.34]	NR [NR] (imputed)	N
605	chr6_mann_hap4	2679542	2679543	rs2428490	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	DHFRP2	rs2428490-A	NR	5E-10		0.0232656	[0.016-0.031] unit decrease	Affymetrix [127266] (imputed)	N
605	chr6_mann_hap4	2679550	2679551	rs140949683	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GZMB	5,361 Icelandic ancestry individuals	NA	6p21.33		rs140949683-G	0.1074	3E-33		0.361549	[0.3-0.42] unit increase	Illumina [7506463] (imputed)	N
605	chr6_mann_hap4	2679893	2679894	rs62395421	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	6p21.33	RNU6-283P	rs62395421-A	0.0803	2E-15		0.05211951	[0.039-0.065] unit decrease	Affymetrix [~ 2500000] (imputed)	N
605	chr6_mann_hap4	2680412	2680413	rs2844578	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	DHFRP2	rs2844578-C	NR	3E-11		0.0246412	[0.017-0.032] unit decrease	Affymetrix [323858] (imputed)	N
605	chr6_mann_hap4	2681314	2681315	rs6457402	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	DHFRP2	rs6457402-T	NR	1E-11		0.0242388	[0.017-0.031] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_mann_hap4	2681395	2681396	rs2844575	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2844575-T	0.536322	3E-9		0.0243122	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
605	chr6_mann_hap4	2681395	2681396	rs2844575	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	6p21.33		rs2844575-T	0.536	2E-12				Affymetrix [10369434] (imputed)	N
605	chr6_mann_hap4	2681395	2681396	rs2844575	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs2844575-T	0.536	4E-31				Affymetrix [10369434] (imputed)	N
605	chr6_mann_hap4	2681395	2681396	rs2844575	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.33		rs2844575-T	0.536	2E-53				Affymetrix [10369434] (imputed)	N
605	chr6_mann_hap4	2681395	2681396	rs2844575	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	DHFRP2	rs2844575-C	NR	1E-11		0.0207917	[0.015-0.027] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_mann_hap4	2681786	2681787	rs17193122	26151496	Chen PL	2015-07-07	Nat Commun	Genetic determinants of antithyroid drug-induced agranulocytosis by human leukocyte antigen genotyping and genome-wide association study.	Thionamide-induced agranulocytosis in Graves' disease	21 East Asian ancestry cases with agranulocytosis, 662 East Asian ancestry cases without agranulocytosis	21 East Asian ancestry cases with agranulocytosis, 546 East Asian ancestry cases without agranulocytosis	6p21.33	HLA-B*38:02	rs17193122-A	0.047	4E-27	(trend)	9.59	[5.78-15.90] (allelic)	Affymetrix [522980]	N
605	chr6_mann_hap4	2682241	2682242	rs57989216	31219150	Ekenberg C	2019-06-13	J Infect Dis	Single nucleotide polymorphisms in HLA alleles are associated with HIV-1 viral load in demographically diverse, ART-naive participants from the START trial.	Pre-treatment viral load in HIV-1 infection	1,398 European ancestry individuals, 572 Black individuals, 418 Hispanic individuals, 13 Asian ancestry individuals, 39 individuals	NA	6p21.33	HLA-B, MIR6891	rs57989216-A	0.053	7E-13		0.4	[0.28-0.52] unit decrease	Affymetrix [339439]	N
605	chr6_mann_hap4	2682351	2682352	rs2922994	25569183	Vijai J	2015-01-08	Nat Commun	A genome-wide association study of marginal zone lymphoma shows association to the HLA region.	Marginal zone lymphoma	825 European ancestry cases, 6,221 European ancestry controls	456 European ancestry cases, 906 European ancestry controls	6p21.33	HLA-B, TCF19	rs2922994-G	0.113	2E-9		1.64	[1.39-1.92]	Illumina [611856]	N
605	chr6_mann_hap4	2682446	2682447	rs146683910	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Iritis	2,616 European ancestry cases, 478,126 European ancestry controls, 110 East Asian ancestry cases, 175,543 East Asian ancestry controls	NA	6p21.33		rs146683910-T	NR	5E-191		1.8349	[1.71-1.96] unit increase	Affymetrix, Illumina [25844196] (imputed)	N
605	chr6_mann_hap4	2682549	2682550	rs7743761	20062062	Reveille JD	2010-01-10	Nat Genet	Genome-wide association study of ankylosing spondylitis identifies non-MHC susceptibility loci.	Ankylosing spondylitis	2,053 European ancestry cases, 5,140 European ancestry controls	898 European ancestry cases, 1,518 European ancestry controls	6p21.33	MHC	rs7743761-?	NR	5E-304				Illumina [288662]	N
605	chr6_mann_hap4	2682867	2682868	rs9266406	23001997	Hou S	2012-12-06	Arthritis Rheum	Identification of a susceptibility locus in STAT4 for Behcet's disease in Han Chinese in a genome-wide association study.	Behcet's disease	147 Han Chinese ancestry cases, 951 Han Chinese ancestry controls	554 Han Chinese ancestry cases, 1,159 Han Chinese ancestry controls	6p21.33	MICA, DHFRP2, MICB	rs9266406-?	.40	2E-10		2.29	[1.77-2.95]	Affymetrix [661736]	N
605	chr6_mann_hap4	2683597	2683598	rs2853989	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of granulocytes	170,223 European ancestry individuals	NA	6p21.33	DHFRP2, RNU6-283P	rs2853989-G	0.3405	3E-10		0.02321877	[0.016-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
605	chr6_mann_hap4	2683658	2683659	rs2922996	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TEK	5,362 Icelandic ancestry individuals	NA	6p21.33		rs2922996-C	0.4661	1E-15		0.150071	[0.11-0.19] unit decrease	Illumina [7506463] (imputed)	N
605	chr6_mann_hap4	2683658	2683659	rs2922996	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Angiopoietin-1 receptor levels	21,758 European ancestry individuals	9,173 individuals	6p21.33		rs2922996-C	0.46	2E-101		0.1892	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
605	chr6_mann_hap4	2683662	2683663	rs9266428	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	6p21.33	DHFRP2, RNU6-283P	rs9266428-A	0.1804	9E-36		0.05778517	[0.049-0.067] unit increase	Affymetrix [~ 2500000] (imputed)	N
605	chr6_mann_hap4	2683662	2683663	rs9266428	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	6p21.33	DHFRP2, RNU6-283P	rs9266428-A	0.1804	3E-36		0.05807499	[0.049-0.067] unit increase	Affymetrix [~ 2500000] (imputed)	N
605	chr6_mann_hap4	2684544	2684545	rs9266444	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	142,940 East Asian ancestry individuals	NA	6p21.33	NR	rs9266444-A	0.237855	2E-10		0.029197	[0.02-0.038] SD units increase	Affymetrix, Illumina [16289021] (imputed)	N
605	chr6_mann_hap4	2684797	2684798	rs9501574	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	RNU6-283P	rs9501574-C	NR	1E-8		0.023019	[0.015-0.031] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_mann_hap4	2685297	2685298	rs2853986	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	RNU6-283P	rs2853986-C	NR	8E-20		0.0399121	[0.031-0.048] unit decrease	Affymetrix [323858] (imputed)	N
605	chr6_mann_hap4	2685297	2685298	rs2853986	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	RNU6-283P	rs2853986-C	NR	7E-18		0.037756	[0.029-0.046] unit decrease	Affymetrix [127266] (imputed)	N
605	chr6_mann_hap4	2686533	2686534	rs2844559	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	AL671883.1	rs2844559-T	NR	2E-16		0.0350697	[0.027-0.043] unit increase	Affymetrix [323123] (imputed)	N
605	chr6_mann_hap4	2686616	2686617	rs9266490	24326010	Xavier JM	2013-12-10	Ann Rheum Dis	FUT2: filling the gap between genes and environment in Behcet's disease?	Behcet's disease	292 Iranian ancestry cases, 294 Iranian ancestry controls	684 Iranian ancestry cases, 532 Iranian ancestry controls, 1,215 Turkish ancestry cases, 1,278 Turkish ancestry controls	6p21.33	HLA-B	rs9266490-G	0.279	2E-44	(Greater Middle Eastern)	2.73	[2.35-3.17]	Affymetrix [868254]	N
605	chr6_mann_hap4	2687367	2687368	rs2263321	30566020	Fukaya E	2018-12-01	Circulation	Clinical and Genetic Determinants of Varicose Veins.	Varicose veins	9,577 British ancestry cases, 327,959 British ancestry controls	NA	6p21.33	NR	rs2263321-A	0.33	8E-9		0.091	[0.06-0.122] unit decrease	Affymetrix [10972371] (imputed)	N
605	chr6_mann_hap4	2688111	2688112	rs9501380	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	AL671883.1	rs9501380-A	NR	4E-8		0.0310676	[0.02-0.042] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_mann_hap4	2688226	2688227	rs2523517	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	6p21.33	FGFR3P1	rs2523517-A	0.3597	3E-17		0.0314362	[0.024-0.039] unit increase	Affymetrix [~ 2500000] (imputed)	N
605	chr6_mann_hap4	2688342	2688343	rs2523515	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	6p21.33	FGFR3P1	rs2523515-A	0.3451	6E-13		0.02824211	[0.021-0.036] unit decrease	Affymetrix [~ 2500000] (imputed)	N
605	chr6_mann_hap4	2688610	2688611	rs9501583	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.33		rs9501583-C	0.811	3E-18				Affymetrix [10369434] (imputed)	N
605	chr6_mann_hap4	2688633	2688634	rs5013221	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.33		rs5013221-C	0.371	1E-26				Affymetrix [10369434] (imputed)	N
605	chr6_mann_hap4	2688939	2688940	rs2523644	30226566	Yamada Y	2018-09-04	Int J Mol Med	Identification of 13 novel susceptibility loci for early-onset myocardial infarction, hypertension, or chronic kidney disease.	Myocardial infarction	1,152 Japanese ancestry cases, 5,774 Japanese ancestry controls	NA	6p21.33	Intergenic	rs2523644-G		5E-7		1.49		Illumina [31245]	N
605	chr6_mann_hap4	2689236	2689237	rs2844551	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	AL671883.1	rs2844551-G	NR	2E-9		0.0207536	[0.014-0.028] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_mann_hap4	2691360	2691361	rs116488202	25200001	Robinson PC	2014-09-08	Arthritis Rheumatol	Genetic dissection of acute anterior uveitis reveals similarities and differences in associations observed with ankylosing spondylitis.	Acute anterior uveitis (with or without ankylosing spondylitis)	238 European ancestry primary acute anterior uveitis cases, 1,199 European ancestry cases with acute anterior uveitis and ankylosing spondylitis, 9,564 European ancestry controls	NR	6p21.33	HLA-B	rs116488202-?	NR	1E-300		16.8	[15.0-18.7]	Illumina [at least 106525] (imputed)	N
605	chr6_mann_hap4	2691360	2691361	rs116488202	23749187	Cortes A	2013-07-01	Nat Genet	Identification of multiple risk variants for ankylosing spondylitis through high-density genotyping of immune-related loci.	Ankylosing spondylitis	9,069 European ancestry cases, 1,550 East Asian ancestry cases, 13,578 European ancestry controls, 1,567 East Asian ancestry controls	NA	6p21.33	HLA-B*27	rs116488202-?	NR	1E-100	(EA)	46.0		Illumina [128935]	N
605	chr6_mann_hap4	2692310	2692311	rs9266613	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.33		rs9266613-T	0.805	8E-22				Affymetrix [10369434] (imputed)	N
605	chr6_mann_hap4	2692611	2692612	rs9266618	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	FGFR3P1	rs9266618-C	NR	4E-9		0.0286873	[0.019-0.038] unit decrease	Affymetrix [319769] (imputed)	N
605	chr6_mann_hap4	2692611	2692612	rs9266618	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	FGFR3P1	rs9266618-C	NR	6E-9		0.0284984	[0.019-0.038] unit decrease	Affymetrix [319769] (imputed)	N
605	chr6_mann_hap4	2692611	2692612	rs9266618	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	FGFR3P1	rs9266618-C	NR	2E-8		0.0280195	[0.018-0.038] unit decrease	Affymetrix [321169] (imputed)	N
605	chr6_mann_hap4	2692890	2692891	rs2523627	31375628	Tengvall K	2019-08-02	Proc Natl Acad Sci U S A	Molecular mimicry between Anoctamin 2 and Epstein-Barr virus nuclear antigen 1 associates with multiple sclerosis risk.	Anti-anoctamin 2 antibody levels	11,936 European ancestry individuals	NA	6p21.33	NR	rs2523627-C	NR	9E-6		0.05	[0.026-0.074] unit increase	Illumina [615763]	N
605	chr6_mann_hap4	2693002	2693003	rs4959072	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	FGFR3P1	rs4959072-C	NR	9E-10		0.0233595	[0.016-0.031] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_mann_hap4	2693047	2693048	rs6909636	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	FGFR3P1	rs6909636-A	NR	1E-8		0.018048	[0.012-0.024] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_mann_hap4	2693069	2693070	rs2442736	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	FGFR3P1	rs2442736-C	NR	2E-9		0.0200243	[0.014-0.027] unit decrease	Affymetrix [319769] (imputed)	N
605	chr6_mann_hap4	2693069	2693070	rs2442736	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	FGFR3P1	rs2442736-C	NR	1E-10		0.0237826	[0.017-0.031] unit decrease	Affymetrix [323858] (imputed)	N
605	chr6_mann_hap4	2693069	2693070	rs2442736	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	FGFR3P1	rs2442736-C	NR	5E-9		0.0194468	[0.013-0.026] unit decrease	Affymetrix [319769] (imputed)	N
605	chr6_mann_hap4	2693069	2693070	rs2442736	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	FGFR3P1	rs2442736-C	NR	8E-10		0.022647	[0.015-0.03] unit decrease	Affymetrix [127266] (imputed)	N
605	chr6_mann_hap4	2693101	2693102	rs2442735	27668658	Iotchkova V	2016-11-01	Nat Genet	Discovery and refinement of genetic loci associated with cardiometabolic risk using dense imputation maps.	Cardiometabolic and hematological traits	up to 35,981 European ancestry individuals	up to 102,505 European ancestry individuals	6p21.33	HLA-B	rs2442735-G		2E-46	(WBC)	0.01	[0.008-0.012] unit decrease	Affymetrix, Illumina [17000000] (imputed)	N
605	chr6_mann_hap4	2693270	2693271	rs9266629	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	6p21.33	NR	rs9266629-?	NR	4E-9				Affymetrix [~ 8270000] (imputed)	N
605	chr6_mann_hap4	2693270	2693271	rs9266629	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	6p21.33	NR	rs9266629-?		5E-11	(SFTPD)	0.2699	[NR] unit increase	Illumina [NR]	N
605	chr6_mann_hap4	2693270	2693271	rs9266629	23144326	Kim DK	2012-11-09	Am J Respir Crit Care Med	Genome-wide association analysis of blood biomarkers in chronic obstructive pulmonary disease.	Chronic obstructive pulmonary disease-related biomarkers	Up to 1,951 European ancestry smokers	NA	6p21.33	FGFR3P	rs9266629-C	0.21	4E-10	(SP-D)			Illumina [588352]	N
605	chr6_mann_hap4	2693426	2693427	rs9266634	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	FGFR3P1	rs9266634-A	NR	2E-15		0.0224814	[0.017-0.028] unit decrease	Affymetrix [319769] (imputed)	N
605	chr6_mann_hap4	2693426	2693427	rs9266634	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	FGFR3P1	rs9266634-A	NR	2E-8		0.0175518	[0.011-0.024] unit decrease	Affymetrix [323858] (imputed)	N
605	chr6_mann_hap4	2693426	2693427	rs9266634	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	FGFR3P1	rs9266634-A	NR	3E-14		0.0215569	[0.016-0.027] unit decrease	Affymetrix [319769] (imputed)	N
605	chr6_mann_hap4	2693426	2693427	rs9266634	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	FGFR3P1	rs9266634-A	NR	2E-14		0.0219479	[0.016-0.028] unit decrease	Affymetrix [321169] (imputed)	N
605	chr6_mann_hap4	2693426	2693427	rs9266634	28762467	Wadelius M	2017-08-01	Clin Pharmacol Ther	Sulfasalazine-Induced Agranulocytosis Is Associated With the Human Leukocyte Antigen Locus.	Sulfasalazine-induced agranulocytosis	36 European ancestry cases, 5,170 European ancestry untreated controls	NA	6p21.33	intergenic	rs9266634-?	NR	3E-8		5.37	[2.97-9.69]	Illumina [9380034] (imputed)	N
605	chr6_mann_hap4	2693426	2693427	rs9266634	28762467	Wadelius M	2017-08-01	Clin Pharmacol Ther	Sulfasalazine-Induced Agranulocytosis Is Associated With the Human Leukocyte Antigen Locus.	Sulfasalazine-induced agranulocytosis	36 European ancestry cases, 5,170 European ancestry untreated controls	NA	6p21.33	HLA-B	rs9266634-?	NR	3E-8		5.37	[2.97-9.69]	Illumina [9380034] (imputed)	N
605	chr6_mann_hap4	2693517	2693518	rs9266639	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DDR1	5,364 Icelandic ancestry individuals	NA	6p21.33		rs9266639-T	0.2296	1E-7		0.113803	[0.072-0.156] unit increase	Illumina [7506463] (imputed)	N
605	chr6_mann_hap4	2693652	2693653	rs2844543	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	ZDHHC20P2	rs2844543-T	NR	3E-12		0.0196225	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_mann_hap4	2693652	2693653	rs2844543	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	ZDHHC20P2	rs2844543-T	NR	4E-11		0.0185963	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_mann_hap4	2693652	2693653	rs2844543	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	ZDHHC20P2	rs2844543-T	NR	4E-11		0.0186102	[0.013-0.024] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_mann_hap4	2693652	2693653	rs2844543	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	ZDHHC20P2	rs2844543-T	NR	2E-16		0.0252366	[0.019-0.031] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_mann_hap4	2693674	2693675	rs79815527	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28+ CD45RA+ CD8dim T cell %T cell	3,440 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs79815527-A	0.12032	3E-9		0.2753	[0.18-0.37] unit increase	Illumina [18357815] (imputed)	N
605	chr6_mann_hap4	2693722	2693723	rs2844542	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	71,221 East Asian ancestry individuals	NA	6p21.33		rs2844542-G	0.354053	4E-8		0.024232	[0.016-0.033] unit increase	Illumina [13466143] (imputed)	N
605	chr6_mann_hap4	2693900	2693901	rs2244020	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	ZDHHC20P2	rs2244020-G	NR	4E-13		0.0234399	[0.017-0.03] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_mann_hap4	2693900	2693901	rs2244020	25102180	Ng MC	2014-08-07	PLoS Genet	Meta-analysis of genome-wide association studies in African Americans provides insights into the genetic architecture of type 2 diabetes.	Type 2 diabetes	8,284 African American cases, 15,543 African American controls	6,061 African American cases, 5,483 African American controls, 8,130 European ancestry cases, 38,987 European ancestry controls	6p21.33	HLA-B	rs2244020-G	0.69	7E-9		1.09	[1.06-1.13]	Affymetrix, Illumina [2579389] (imputed)	N
605	chr6_mann_hap4	2693900	2693901	rs2244020	25102180	Ng MC	2014-08-07	PLoS Genet	Meta-analysis of genome-wide association studies in African Americans provides insights into the genetic architecture of type 2 diabetes.	Type 2 diabetes	8,284 African American cases, 15,543 African American controls	6,061 African American cases, 5,483 African American controls, 8,130 European ancestry cases, 38,987 European ancestry controls	6p21.33	HLA-B	rs2244020-G	0.69	1E-6	(AA)	1.11	[1.07-1.16]	Affymetrix, Illumina [2579389] (imputed)	N
605	chr6_mann_hap4	2694247	2694248	rs4713460	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.33		rs4713460-G	0.739	7E-16				Affymetrix [10369434] (imputed)	N
605	chr6_mann_hap4	2694247	2694248	rs4713460	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	ZDHHC20P2	rs4713460-A	NR	2E-8		0.019914	[0.013-0.027] unit increase	Affymetrix [323858] (imputed)	N
605	chr6_mann_hap4	2694265	2694266	rs4713462	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	ZDHHC20P2	rs4713462-A	NR	3E-9		0.0207985	[0.014-0.028] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_mann_hap4	2694265	2694266	rs4713462	32534018	Liu X	2020-06-10	Brain Behav Immun	Genetic factors underlying the bidirectional relationship between autoimmune and mental disorders - findings from a Danish population-based study.	Autoimmune traits	1,383 Danish ancestry cases, 62,656 Danish ancestry controls	NA	6p21.33	NR	rs4713462-A	0.29	2E-13		1.37	[1.26-1.49]	NR [7721839] (imputed)	N
605	chr6_mann_hap4	2694489	2694490	rs2596570	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Tyrosine levels	114,913 European ancestry individuals	NA	6p21.33		rs2596570-T	0.834751	5E-9		0.0325088	[0.022-0.043] unit decrease	NR [11722792] (imputed)	N
605	chr6_mann_hap4	2694814	2694815	rs4143332	23603763	Liu JZ	2013-06-01	Nat Genet	Dense genotyping of immune-related disease regions identifies nine new risk loci for primary sclerosing cholangitis.	Primary sclerosing cholangitis	3,789 European ancestry cases, 25,079 European ancestry controls	NA	6p21.33	HLA-B	rs4143332-?	NR	1E-250				Illumina [140322] (imputed)	N
605	chr6_mann_hap4	2694826	2694827	rs9266677	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	ZDHHC20P2	rs9266677-A	NR	2E-8		0.0194816	[0.013-0.026] unit increase	Affymetrix [323123] (imputed)	N
605	chr6_mann_hap4	2694968	2694969	rs4143333	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	6p21.33	MICA	rs4143333-G	0.12	2E-16	(conditional on rs2284174)	1.15	[NR]	Affymetrix, Illumina [6224355] (imputed)	N
605	chr6_mann_hap4	2694968	2694969	rs4143333	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	6p21.33	HLA-C, MICA	rs4143333-G	NR	1E-9		0.186384	[0.13-0.25] unit decrease	Illumina [at least 950000] (imputed)	N
605	chr6_mann_hap4	2696268	2696269	rs9266721	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.33		rs9266721-C	0.408	8E-27				Affymetrix [10369434] (imputed)	N
605	chr6_mann_hap4	2696293	2696294	rs9295987	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CREB3L4	5,364 Icelandic ancestry individuals	NA	6p21.33		rs9295987-G	0.04402	4E-158		1.13632	[1.05-1.22] unit increase	Illumina [7506463] (imputed)	N
605	chr6_mann_hap4	2696293	2696294	rs9295987	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	FGFR3P1	rs9295987-G	0.061	3E-69	(Cyclic AMP-responsive element-binding protein 3-like protein 4, CREB3L4.11308.8.3)	0.87	[0.77-0.97] unit increase	Affymetrix [10572788] (imputed)	N
605	chr6_mann_hap4	2696752	2696753	rs2844535	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-S	rs2844535-G	NR	1E-11		0.023805	[0.017-0.031] unit decrease	Affymetrix [323858] (imputed)	N
605	chr6_mann_hap4	2696752	2696753	rs2844535	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HLA-S	rs2844535-G	NR	3E-11		0.0233241	[0.016-0.03] unit decrease	Affymetrix [127266] (imputed)	N
605	chr6_mann_hap4	2697153	2697154	rs1521	31050781	Zhao SX	2019-05-03	JAMA Netw Open	Assessment of Molecular Subtypes in Thyrotoxic Periodic Paralysis and Graves Disease Among Chinese Han Adults: A Population-Based Genome-Wide Association Study.	Thyrotoxic hypokalemic periodic paralysis and Graves disease	171 Han Chinese ancestry cases, 2,160 Han Chinese ancestry controls	362 Han Chinese ancestry cases, 1,089 Han Chinese ancestry controls	6p21.33	MICA/HLA-B	rs1521-?	0.81	4E-18		2.51	[2.02-3.13]	Illumina [2752055] (imputed)	N
605	chr6_mann_hap4	2697153	2697154	rs1521	21841780	Chu X	2011-08-14	Nat Genet	A genome-wide association study identifies two new risk loci for Graves' disease.	Graves' disease	1,468 Chinese ancestry cases, 1,490 Chinese ancestry controls	3,994 Chinese ancestry cases, 3,510 Chinese ancestry controls	6p21.33	HLA-B	rs1521-T	0.79	2E-65		1.92	[1.78-2.08]	Illumina [486049]	N
605	chr6_mann_hap4	2697503	2697504	rs17193507	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	683 Turkish ancestry cases, 1,721 Turkish ancestry controls	NA	6p21.33	HLA-B, MICA	rs17193507-?	NR	2E-18	(conditional on rs2844678, rs9262437 and rs61444472)			Illumina [4495750] (imputed)	N
605	chr6_mann_hap4	2697503	2697504	rs17193507	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	286 European ancestry cases, 2,652 European ancestry controls, 76 Han Chinese ancestry cases, 889 Han Chinese ancestry controls, 46 South Asian ancestry cases, 501 South Asian ancestry controls, 683 Turkish ancestry cases, 1,721 Turkish ancestry controls	NA	6p21.33	HLA-B, MICA	rs17193507-?	NR	7E-30	(conditional on rs2844678 and rs12524487)	3.28	NR	Illumina [up to 4495750] (imputed)	N
605	chr6_mann_hap4	2697662	2697663	rs9266745	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p21.33	HLA-B, MICA	rs9266745-G	0.17	2E-8	(Turkish)	1.87	[1.50-2.34]	Illumina [up to 547389]	N
605	chr6_mann_hap4	2697972	2697973	rs3020582	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-S	rs3020582-A	NR	3E-32		0.0377962	[0.032-0.044] unit increase	Affymetrix [323123] (imputed)	N
605	chr6_mann_hap4	2697980	2697981	rs2905715	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-S	rs2905715-C	NR	1E-12		0.0208764	[0.015-0.027] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_mann_hap4	2697980	2697981	rs2905715	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-S	rs2905715-C	NR	1E-10		0.0211485	[0.015-0.028] unit increase	Affymetrix [323858] (imputed)	N
605	chr6_mann_hap4	2697980	2697981	rs2905715	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-S	rs2905715-C	NR	1E-12		0.020881	[0.015-0.027] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_mann_hap4	2697980	2697981	rs2905715	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HLA-S	rs2905715-C	NR	3E-10		0.0206892	[0.014-0.027] unit increase	Affymetrix [127266] (imputed)	N
605	chr6_mann_hap4	2697980	2697981	rs2905715	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.33	HLA-S	rs2905715-C	NR	9E-10		0.0181976	[0.012-0.024] unit increase	Affymetrix [321114] (imputed)	N
605	chr6_mann_hap4	2697980	2697981	rs2905715	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-S	rs2905715-C	NR	3E-8		0.0177635	[0.011-0.024] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_mann_hap4	2697980	2697981	rs2905715	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HLA-S	rs2905715-C	NR	3E-13		0.0217768	[0.016-0.028] unit increase	Affymetrix [321169] (imputed)	N
605	chr6_mann_hap4	2697999	2698000	rs3020581	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-S	rs3020581-G	NR	2E-14		0.0240767	[0.018-0.03] unit decrease	Affymetrix [323858] (imputed)	N
605	chr6_mann_hap4	2697999	2698000	rs3020581	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HLA-S	rs3020581-G	NR	1E-12		0.0224897	[0.016-0.029] unit decrease	Affymetrix [127266] (imputed)	N
605	chr6_mann_hap4	2697999	2698000	rs3020581	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HLA-S	rs3020581-G	NR	6E-18		0.0248167	[0.019-0.03] unit decrease	Affymetrix [321169] (imputed)	N
605	chr6_mann_hap4	2698044	2698045	rs9266762	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-S	rs9266762-T	NR	2E-8		0.019515	[0.013-0.026] unit decrease	Affymetrix [319769] (imputed)	N
605	chr6_mann_hap4	2698044	2698045	rs9266762	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-S	rs9266762-T	NR	4E-8		0.0191651	[0.012-0.026] unit increase	Affymetrix [321016] (imputed)	N
605	chr6_mann_hap4	2698114	2698115	rs2507978	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	6p21.33	HLA-B, MICA	rs2507978-G	0.41	1E-10		1.035	[1.02-1.05]	Affymetrix, Illumina [8307659] (imputed)	N
605	chr6_mann_hap4	2698125	2698126	rs9266766	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)(bidirectional)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.33		rs9266766-G	NR	2E-9				Affymetrix [7846216] (imputed)	N
605	chr6_mann_hap4	2698490	2698491	rs2442749	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	6p21.33	HLA-S	rs2442749-C	0.292193	6E-13		0.018536638	[0.013-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
605	chr6_mann_hap4	2698510	2698511	rs6920323	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.33	NR	rs6920323-T	NR	4E-6		0.022	unit decrease	Affymetrix [at least 7091467] (imputed)	N
605	chr6_mann_hap4	2698510	2698511	rs6920323	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.33	NR	rs6920323-T	NR	2E-13		0.038	unit decrease	Affymetrix [at least 7091467] (imputed)	N
605	chr6_mann_hap4	2698510	2698511	rs6920323	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.33	NR	rs6920323-T	0.812	3E-14	(EA)	0.044	unit decrease	Affymetrix [at least 7091467] (imputed)	N
605	chr6_mann_hap4	2698510	2698511	rs6920323	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.33	NR	rs6920323-T	NR	2E-11		0.036	unit decrease	Affymetrix [at least 7091467] (imputed)	N
605	chr6_mann_hap4	2698510	2698511	rs6920323	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.33	NR	rs6920323-T	0.812	4E-12	(EA)	0.042	unit decrease	Affymetrix [at least 7091467] (imputed)	N
605	chr6_mann_hap4	2698563	2698564	rs9266772	23817569	Hinds DA	2013-06-30	Nat Genet	A genome-wide association meta-analysis of self-reported allergy identifies shared and allergy-specific susceptibility loci.	Self-reported allergy	53,862 European ancestry individuals	NA	6p21.33	MICA, HLA-C	rs9266772-C	0.1882	3E-12		0.104	[0.075-0.133] unit increase	Illumina [2400000] (imputed)	N
605	chr6_mann_hap4	2698896	2698897	rs7775759	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-S	rs7775759-A	NR	1E-11		0.0216624	[0.015-0.028] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_mann_hap4	2699081	2699082	rs7741091	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	6p21.33	RNU6-603P	rs7741091-?	NR	3E-26		0.0306	[0.026-0.036] unit increase	Affymetrix [5701386] (imputed)	N
605	chr6_mann_hap4	2699081	2699082	rs7741091	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.33	HLA-S	rs7741091-A	0.6803	3E-7		0.0391	[0.024-0.054] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
605	chr6_mann_hap4	2699081	2699082	rs7741091	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p21.33	MICA	rs7741091-A	0.6701	8E-8	(EA)	0.0202	[0.013-0.028] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
605	chr6_mann_hap4	2699081	2699082	rs7741091	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p21.33	MICA	rs7741091-A	0.6701	2E-8	(EA,men)	0.0306	[0.02-0.041] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
605	chr6_mann_hap4	2699144	2699145	rs56671953	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6p21.33	NR	rs56671953-?	NR	7E-9				Affymetrix [~ 8270000] (imputed)	N
605	chr6_mann_hap4	2699621	2699622	rs2844531	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	315,284 European ancestry male individuals	NA	6p21.33	NR	rs2844531-A	0.8585	1E-30		0.0294	[0.024-0.034] unit increase	NR [~ 27400000] (imputed)	N
605	chr6_mann_hap4	2699779	2699780	rs2596565	24532677	Bossini-Castillo L	2014-02-14	Ann Rheum Dis	A genome-wide association study of rheumatoid arthritis without antibodies against citrullinated peptides.	Rheumatoid arthritis (ACPA-negative)	1,148 European ancestry cases, 6,008 European ancestry controls	774 European ancestry cases, 1,079 European ancestry controls	6p21.33	MICA, HLA-B	rs2596565-?		9E-9		1.4	[NR]	Illumina [452367]	N
605	chr6_mann_hap4	2700089	2700090	rs2523484	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-S	rs2523484-T	NR	9E-10		0.0200027	[0.014-0.026] unit increase	Affymetrix [323858] (imputed)	N
605	chr6_mann_hap4	2700089	2700090	rs2523484	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HLA-S	rs2523484-T	NR	7E-9		0.01891	[0.013-0.025] unit increase	Affymetrix [127266] (imputed)	N
605	chr6_mann_hap4	2700089	2700090	rs2523484	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-S	rs2523484-T	NR	3E-15		0.0253333	[0.019-0.032] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_mann_hap4	2700089	2700090	rs2523484	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HLA-S	rs2523484-T	NR	3E-8		0.0164823	[0.011-0.022] unit increase	Affymetrix [321169] (imputed)	N
605	chr6_mann_hap4	2700242	2700243	rs2523483	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.33	NR	rs2523483-T	0.939	3E-11	(conditional)	4.665	[4.53-4.8]	Illumina [11270530] (imputed)	N
605	chr6_mann_hap4	2700631	2700632	rs6932730	23817571	Bonnelykke K	2013-06-30	Nat Genet	Meta-analysis of genome-wide association studies identifies ten loci influencing allergic sensitization.	Allergic sensitization	5,789 European ancestry cases, 10,056 European ancestry controls	6,114 European ancestry cases, 9,920 European ancestry controls	6p21.33	MICA, HLA-C, HLA-B, MICB	rs6932730-T	0.82	4E-8		1.14	[1.09-1.20]	Affymetrix, Illumina [~ 2500000] (imputed)	N
605	chr6_mann_hap4	2700687	2700688	rs12524487	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	286 European ancestry cases, 2,652 European ancestry controls, 76 Han Chinese ancestry cases, 889 Han Chinese ancestry controls, 46 South Asian ancestry cases, 501 South Asian ancestry controls, 683 Turkish ancestry cases, 1,721 Turkish ancestry controls	NA	6p21.33	HLA-B, MICA	rs12524487-?	NR	6E-38	(conditional on rs2844678)	3.12	NR	Illumina [up to 4495750] (imputed)	N
605	chr6_mann_hap4	2700687	2700688	rs12524487	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	229 European ancestry cases, 1,088 European ancestry controls	NA	6p21.33	HLA-B, MICA	rs12524487-?	NR	7E-20				Illumina [4388215] (imputed)	N
605	chr6_mann_hap4	2700687	2700688	rs12524487	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p21.33	HLA-B, MICA	rs12524487-T	0.07	3E-15	(EA)	3.78	[2.66-5.36]	Illumina [up to 547389]	N
605	chr6_mann_hap4	2700687	2700688	rs12524487	23830517	Saruhan-Direskeneli G	2013-07-03	Am J Hum Genet	Identification of multiple genetic susceptibility loci in Takayasu arteritis.	Takayasu arteritis	305 Turkish ancestry cases, 106 European ancestry cases, 483 Turkish ancestry controls, 553 European ancestry controls	NA		HLA-B, MICA	rs12524487-T	0.04	6E-16		3.29		Illumina [at least 124312]	N
605	chr6_mann_hap4	2701009	2701010	rs13437082	28031287	Sasayama D	2016-11-26	Hum Mol Genet	Genome-wide quantitative trait loci mapping of the human cerebrospinal fluid proteome.	Cerebrospinal fluid biomarker levels	133 Japanese ancestry individuals.	NA	6p21.33	NR	rs13437082-?	NR	1E-10	(MHC class I polypeptide-related sequence A)			Illumina [514227]	N
605	chr6_mann_hap4	2701009	2701010	rs13437082	19343178	Soranzo N	2009-04-03	PLoS Genet	Meta-analysis of genome-wide scans for human adult stature identifies novel Loci and associations with measures of skeletal frame size.	Height	12,611 European ancestry individuals	7,187 European ancestry individuals	6p21.33	HLA-B	rs13437082-?	0.13	5E-8		0.07	[0.04-0.10] s.d. decrease	Illumina [229216]	N
605	chr6_mann_hap4	2701568	2701569	rs13437088	23143594	Tsoi LC	2012-12-01	Nat Genet	Identification of 15 new psoriasis susceptibility loci highlights the role of innate immunity.	Psoriasis	10,588 European ancestry cases, 22,806 European ancestry controls	NA	6p21.33	HLA-B, HLA-C, MICA	rs13437088-T	0.25	3E-40	(conditioned on rs4406273)	1.32		Illumina [111236] (imputed)	N
605	chr6_mann_hap4	2702983	2702984	rs72657657	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG181B23.7	rs72657657-A	NR	4E-13		0.0276575	[0.02-0.035] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_mann_hap4	2704363	2704364	rs3128983	33002439	Jin G	2020-10-01	Lancet Oncol	Genetic risk, incident gastric cancer, and healthy lifestyle: a meta-analysis of genome-wide association studies and prospective cohort study.	Gastric cancer	10,254 Han Chinese ancestry cases, 10,914 Han Chinese ancestry controls	NA	6p21.33	NR	rs3128983-T	0.62	4E-6		0.9	NR	Affymetrix, Illumina [6957974] (imputed)	N
605	chr6_mann_hap4	2704715	2704716	rs189117034	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	6p21.33		rs189117034-G	0.012714	4E-6		0.14073	[0.081-0.2] unit decrease	Affymetrix [15580782] (imputed)	N
605	chr6_mann_hap4	2705389	2705390	rs9266791	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG181B23.7	rs9266791-C	NR	9E-16		0.0226999	[0.017-0.028] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_mann_hap4	2705389	2705390	rs9266791	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG181B23.7	rs9266791-C	NR	5E-10		0.0195742	[0.013-0.026] unit increase	Affymetrix [323858] (imputed)	N
605	chr6_mann_hap4	2705389	2705390	rs9266791	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG181B23.7	rs9266791-C	NR	5E-15		0.0220951	[0.017-0.028] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_mann_hap4	2705389	2705390	rs9266791	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	XXbac-BPG181B23.7	rs9266791-C	NR	7E-9		0.0181935	[0.012-0.024] unit increase	Affymetrix [127266] (imputed)	N
605	chr6_mann_hap4	2705389	2705390	rs9266791	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG181B23.7	rs9266791-C	NR	4E-9		0.0165754	[0.011-0.022] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_mann_hap4	2705389	2705390	rs9266791	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG181B23.7	rs9266791-C	NR	5E-14		0.0232092	[0.017-0.029] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_mann_hap4	2705389	2705390	rs9266791	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG181B23.7	rs9266791-C	NR	7E-15		0.0222285	[0.017-0.028] unit increase	Affymetrix [321169] (imputed)	N
605	chr6_mann_hap4	2705401	2705402	rs9348866	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG181B23.7	rs9348866-T	NR	5E-10		0.0179264	[0.012-0.024] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_mann_hap4	2705401	2705402	rs9348866	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG181B23.7	rs9348866-T	NR	3E-9		0.0188961	[0.013-0.025] unit increase	Affymetrix [323858] (imputed)	N
605	chr6_mann_hap4	2705401	2705402	rs9348866	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG181B23.7	rs9348866-T	NR	4E-9		0.0169345	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_mann_hap4	2705401	2705402	rs9348866	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	XXbac-BPG181B23.7	rs9348866-T	NR	3E-8		0.0176499	[0.011-0.024] unit increase	Affymetrix [127266] (imputed)	N
605	chr6_mann_hap4	2705401	2705402	rs9348866	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG181B23.7	rs9348866-T	NR	8E-11		0.0186692	[0.013-0.024] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_mann_hap4	2705401	2705402	rs9348866	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG181B23.7	rs9348866-T	NR	3E-16		0.0256147	[0.019-0.032] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_mann_hap4	2705401	2705402	rs9348866	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG181B23.7	rs9348866-T	NR	4E-9		0.0170756	[0.011-0.023] unit increase	Affymetrix [321169] (imputed)	N
605	chr6_mann_hap4	2705607	2705612	rs71699779	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	6p21.33	XXbac-BPG181B23.7	rs71699779-C	0.069883	9E-37		0.057562444	[0.049-0.066] unit increase	Affymetrix [93095623] (imputed)	N
605	chr6_mann_hap4	2706544	2706545	rs2596517	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG181B23.7	rs2596517-G	NR	7E-14		0.0296528	[0.022-0.037] unit increase	Affymetrix [323123] (imputed)	N
605	chr6_mann_hap4	2706704	2706705	rs7751505	23449627	Cousminer DL	2013-02-27	Hum Mol Genet	Genome-wide association and longitudinal analyses reveal genetic loci linking pubertal height growth, pubertal timing and childhood adiposity.	Pubertal anthropometrics	up to 5,043 European ancestry males, up to 5,756 European ancestry females	NA	6p21.33	MICA, VARS2	rs7751505-C	0.28	4E-6	(Pubertal growth)	0.07	[0.041-0.099] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
605	chr6_mann_hap4	2707051	2707052	rs116562707	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Naive CD8+ T cell %T cell	3,427 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs116562707-G	0.0186	3E-9		0.3952	[0.27-0.53] unit increase	Illumina [18349913] (imputed)	N
605	chr6_mann_hap4	2707051	2707052	rs116562707	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28+ CD45RA+ CD8+ T cell %T cell	3,440 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs116562707-G	0.01868	4E-9		0.4024	[0.27-0.54] unit increase	Illumina [18357815] (imputed)	N
605	chr6_mann_hap4	2707093	2707094	rs28359827	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.33	NR	rs28359827-A	0.077	2E-71	(conditional)	2.916	[2.8-3.03]	Illumina [11270530] (imputed)	N
605	chr6_mann_hap4	2708429	2708430	rs35026345	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	CAG-81 sp000435795 abundance in stool	5,959 Finnish ancestry individuals	NA	6p21.33		rs35026345-T	0.318743	2E-8		0.100796	[0.065-0.136] unit decrease	Illumina [7980478] (imputed)	N
605	chr6_mann_hap4	2708707	2708708	rs28366119	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Keratinocyte cancer (MTAG)	at least 18,538 European ancestry cases, at least 340,302 European ancestry controls	NA	6p21.33	ERG	rs28366119-T	0.939044	4E-11		1.14	[1.10-1.19]	Affymetrix [7600000] (imputed)	N
605	chr6_mann_hap4	2708752	2708753	rs16899524	23417110	Tin A	2013-02-16	Hum Genet	Genome-wide association study identified the human leukocyte antigen region as a novel locus for plasma beta-2 microglobulin.	Beta-2 microglubulin plasma levels	6,728 European ancestry individuals		6p21.33	HLA-B	rs16899524-C	0.93	1E-8		0.04	[0.026-0.054] unit increase	Affymetrix [2500000] (imputed)	N
605	chr6_mann_hap4	2709324	2709325	rs183809241	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pneumonia	16,887 European ancestry cases, 463,412 European ancestry controls, 7,423 East Asian ancestry cases, 171,303 East Asian ancestry controls	NA	6p21.33		rs183809241-C	NR	9E-16		0.7693	[0.58-0.96] unit increase	Affymetrix, Illumina [25843326] (imputed)	N
605	chr6_mann_hap4	2709383	2709384	rs142973694	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	IgA levels	16,883 Icelandic ancestry individuals	2,151 Swedish ancestry individuals	6p21.33	MICA	rs142973694-A	0.0655	7E-10		0.13	NR SD units increase	Illumina [21568490] (imputed)	N
605	chr6_mann_hap4	2709468	2709469	rs2523466	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.33		rs2523466-G	0.77	8E-68				Affymetrix [10369434] (imputed)	N
605	chr6_mann_hap4	2710481	2710482	rs11757660	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG181B23.7	rs11757660-C	NR	9E-13		0.0223072	[0.016-0.028] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_mann_hap4	2710522	2710523	rs28366133	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG181B23.7	rs28366133-T	NR	2E-10		0.0184393	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_mann_hap4	2710522	2710523	rs28366133	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG181B23.7	rs28366133-T	NR	7E-10		0.0199985	[0.014-0.026] unit increase	Affymetrix [323858] (imputed)	N
605	chr6_mann_hap4	2710522	2710523	rs28366133	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG181B23.7	rs28366133-T	NR	2E-9		0.0176126	[0.012-0.023] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_mann_hap4	2710522	2710523	rs28366133	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	XXbac-BPG181B23.7	rs28366133-T	NR	6E-9		0.0188541	[0.012-0.025] unit increase	Affymetrix [127266] (imputed)	N
605	chr6_mann_hap4	2710522	2710523	rs28366133	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG181B23.7	rs28366133-T	NR	6E-18		0.0274101	[0.021-0.034] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_mann_hap4	2710522	2710523	rs28366133	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG181B23.7	rs28366133-T	NR	5E-10		0.0183385	[0.013-0.024] unit increase	Affymetrix [321169] (imputed)	N
605	chr6_mann_hap4	2710522	2710523	rs28366133	28468790	Agopian AJ	2017-06-01	Circ Cardiovasc Genet	Genome-Wide Association Studies and Meta-Analyses for Congenital Heart Defects.	Conotruncal heart defects (maternal effects)	up to 838 European ancestry trios	NA	6p21.33	intergenic	rs28366133-?	NR	4E-6		1.226459	[1.124163-1.338064]	Illumina [at least 4756722] (imputed)	N
605	chr6_mann_hap4	2711150	2711151	rs2251396	25936594	Tomer Y	2015-04-27	J Autoimmun	Genome wide identification of new genes and pathways in patients with both autoimmune thyroiditis and type 1 diabetes.	Type 1 diabetes and autoimmune thyroid diseases	346 European ancestry cases, 727 European ancestry controls	185 European ancestry cases, 340 European ancestry controls	6p21.33	PSORS1C1, MICA, HCP5	rs2251396-T	NR	1E-22		2.2132		Illumina [514008]	N
605	chr6_mann_hap4	2711291	2711292	rs72502580	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG181B23.7	rs72502580-T	NR	9E-9		0.036638	[0.024-0.049] unit increase	Affymetrix [323858] (imputed)	N
605	chr6_mann_hap4	2711291	2711292	rs72502580	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	XXbac-BPG181B23.7	rs72502580-T	NR	8E-9		0.0367455	[0.024-0.049] unit increase	Affymetrix [127266] (imputed)	N
605	chr6_mann_hap4	2712230	2712231	rs4349859	21743469	Evans DM	2011-07-10	Nat Genet	Interaction between ERAP1 and HLA-B27 in ankylosing spondylitis implicates peptide handling in the mechanism for HLA-B27 in disease susceptibility.	Ankylosing spondylitis	3,023 European ancestry cases, 8,779 European ancestry controls	2,111 European ancestry cases, 4,483 European ancestry controls	6p21.33	HLA-B	rs4349859-A	0.04	1E-200	(less than)			Illumina [2223620] (imputed)	N
605	chr6_mann_hap4	2713038	2713039	rs2596542	21499248	Kumar V	2011-04-17	Nat Genet	Genome-wide association study identifies a susceptibility locus for HCV-induced hepatocellular carcinoma.	Hepatocellular carcinoma	721 Japanese ancestry cases, 2,890 Japanese ancestry controls	673 Japanese ancestry cases, 2,596 Japanese ancestry controls	6p21.33	MICA	rs2596542-A	0.33	4E-13		1.39	[1.27-1.52]	Illumina [432703]	N
605	chr6_mann_hap4	2713495	2713496	rs146482045	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.33		rs146482045-T	0.934	1E-13				Affymetrix [10369434] (imputed)	N
605	chr6_mann_hap4	2714886	2714887	rs6911024	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	6p21.33	MICA, HLA-C	rs6911024-T	0.90242	2E-13		0.038308	[0.028-0.049] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
605	chr6_mann_hap4	2714943	2714944	rs112142209	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DNAJB11	5,359 Icelandic ancestry individuals	NA	6p21.33		rs112142209-G	0.01759	6E-13		0.501147	[0.36-0.64] unit increase	Illumina [7506463] (imputed)	N
605	chr6_mann_hap4	2716095	2716096	rs13220896	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	6p21.33	MICA	rs13220896-G	0.95996	2E-12		0.0328311	[0.024-0.042] unit increase	NR [13737936] (imputed)	N
605	chr6_mann_hap4	2716095	2716096	rs13220896	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p21.33		rs13220896-?	NR	4E-15		0.0407174	[0.03-0.051] unit increase	Affymetrix [20259828] (imputed)	N
605	chr6_mann_hap4	2717155	2717156	rs17200067	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MICA	5,360 Icelandic ancestry individuals	NA	6p21.33		rs17200067-T	0.03112	2E-87		1.02615	[0.92-1.13] unit increase	Illumina [7506463] (imputed)	N
605	chr6_mann_hap4	2717155	2717156	rs17200067	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	MICA, HCP5, Y_RNA	rs17200067-T	0.0311245	6E-15	(EA, MHC class I polypeptide-related sequence A)	0.9664	[0.73-1.21] unit increase	Affymetrix [509946]	N
605	chr6_mann_hap4	2717417	2717418	rs116135464	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Uveitis	2,616 European ancestry cases, 478,126 European ancestry controls, 125 East Asian ancestry cases, 174,600 East Asian ancestry controls	NA	6p21.33		rs116135464-T	NR	8E-191		1.8397	[1.72-1.96] unit increase	Affymetrix, Illumina [25844095] (imputed)	N
605	chr6_mann_hap4	2717504	2717505	rs59440261	26553974	McLaren PJ	2015-11-09	Proc Natl Acad Sci U S A	Polymorphisms of large effect explain the majority of the host genetic contribution to variation of HIV-1 virus load.	Setpoint viral load in HIV-1 infection	6,315 European ancestry cases	NA	6p21.33	HLA-B	rs59440261-?	NR	2E-83				Affymetrix, Illumina [~ 8000000] (imputed)	N
605	chr6_mann_hap4	2717863	2717864	rs2844519	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	6p21.33	MICA	rs2844519-C	0.792829	7E-10		0.017882064	[0.012-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
605	chr6_mann_hap4	2718020	2718021	rs2301747	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCP5, MICA	rs2301747-G	NR	2E-12		0.0308634	[0.022-0.039] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_mann_hap4	2719002	2719003	rs2844518	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MICA	5,360 Icelandic ancestry individuals	NA	6p21.33		rs2844518-T	0.3275	2E-28		0.215281	[0.18-0.25] unit increase	Illumina [7506463] (imputed)	N
605	chr6_mann_hap4	2719151	2719152	rs2507968	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Gynecologic disease (multivariate analysis)	up to 7,975 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs2507968-?		3E-9	(uterine fibroid, uterine cervical cancer)			Illumina [7645193] (imputed)	N
605	chr6_mann_hap4	2720418	2720419	rs116795853	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	MICA	rs116795853-A	0.026	1E-18	(DnaJ homolog subfamily B member 11, DNAJB11.7110.2.3)	0.66	[0.5-0.82] unit increase	Affymetrix [10572788] (imputed)	N
605	chr6_mann_hap4	2720696	2720697	rs2857281	26190474	Dai Y	2015-07-20	Sci Rep	Performance of genetic risk factors in prediction of trichloroethylene induced hypersensitivity syndrome.	Trichloroethylene-induced hypersensitivity syndrome	98 Han Chinese ancestry cases, 98 Han Chinese ancestry trichloroethylene-tolerant controls	Up to 74 Han Chinese ancestry cases, up to 1,661 Han Chinese ancestry trichloroethylene-tolerant controls	6p21.33	MICA	rs2857281-C	0.081	1E-37		11.92	[8.16-17.42]	Illumina [1392644]	N
605	chr6_mann_hap4	2721013	2721014	rs12174396	32771030	Tangtanatakul P	2020-08-08	Arthritis Res Ther	Meta-analysis of genome-wide association study identifies FBN2 as a novel locus associated with systemic lupus erythematosus in Thai population.	Systemic lupus erythematosus	487 Thai cases, 1,606 Thai controls	405 Thai cases, 1,590 Thai controls	6p21.33	HCP5	rs12174396-G	0.18	2E-7		0.6904	[NR]	Illumina [421909] (imputed)	N
605	chr6_mann_hap4	2722978	2722979	rs2263314	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCP5, MICA	rs2263314-T	NR	9E-9		0.0249923	[0.016-0.034] unit increase	Affymetrix [323858] (imputed)	N
605	chr6_mann_hap4	2722978	2722979	rs2263314	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HCP5, MICA	rs2263314-T	NR	6E-9		0.0252674	[0.017-0.034] unit increase	Affymetrix [127266] (imputed)	N
605	chr6_mann_hap4	2724019	2724020	rs12175489	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue adjusted for BMI	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	6p21.33	HCP5, HLA-B	rs12175489-A	0.15	2E-6	(men)			Affymetrix, Illumina [2500000] (imputed)	N
605	chr6_mann_hap4	2724072	2724073	rs114291795	27157822	Hallberg P	2016-05-03	Lancet Diabetes Endocrinol	Genetic variants associated with antithyroid drug-induced agranulocytosis: a genome-wide association study in a European population.	Non-chemotherapy drug induced agranulocytosis	222 European ancestry cases, 12 cases, 5,170 European ancestry controls	NA	6p21.33	MICA, HCP5	rs114291795-?	NR	2E-15		3.57	[2?61-4?90]	Illumina [9380034] (imputed)	N
605	chr6_mann_hap4	2724151	2724152	rs2523496	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cervical cancer	909 European ancestry cases, 238,249 European ancestry controls, 967 East Asian ancestry cases, 60,614 East Asian ancestry controls	NA	6p21.33		rs2523496-C	NR	2E-13		0.2559	[0.19-0.32] unit decrease	Affymetrix, Illumina [25777760] (imputed)	N
605	chr6_mann_hap4	2724151	2724152	rs2523496	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cervical cancer	6,563 European ancestry cases, 410,350 European ancestry controls	NA	6p21.33		rs2523496-T	NR	4E-25		1.2076	NR	Affymetrix [7846216] (imputed)	N
605	chr6_mann_hap4	2724181	2724185	rs201838897	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (salicylic acid and derivatives)	61,583 European ancestry cases, 50,427 European ancestry controls, 41,461 East Asian ancestry cases, 137,265 East Asian ancestry controls	NA	6p21.33		rs201838897-C	NR	9E-17		0.0893	[0.068-0.11] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
605	chr6_mann_hap4	2724181	2724185	rs201838897	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls, 49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	6p21.33		rs201838897-C	NR	4E-14		0.0785	[0.058-0.099] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
605	chr6_mann_hap4	2724221	2724222	rs6938453	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCP5, MICA	rs6938453-A	NR	2E-14		0.0262104	[0.019-0.033] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_mann_hap4	2724221	2724222	rs6938453	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCP5, MICA	rs6938453-A	NR	3E-14		0.028343	[0.021-0.036] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_mann_hap4	2724221	2724222	rs6938453	33794208	Bowden SJ	2021-04-01	Lancet Oncol	Genetic variation in cervical preinvasive and invasive disease: a genome-wide association study.	Cervical intraepithelial neoplasia grade 3 and invasive cervical cancer	764 European ancestry invasive cervical cancer cases, 4,005 European ancestry cervical intraepithelial neoplasia grade 3 cases, 145,545 European ancestry controls	NA	6p21.33	MICA	rs6938453-?	NR	2E-17		0.79	[0.75-0.83]	Affymetrix [9600464] (imputed)	N
605	chr6_mann_hap4	2724221	2724222	rs6938453	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	6p21.33	NR	rs6938453-?	NR	6E-29	(MIC-A)	0.979642	[0.81-1.15] unit decrease	Illumina [11901634] (imputed)	N
605	chr6_mann_hap4	2724337	2724338	rs748543364	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-3 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	6p21.33		rs748543364-AG	0.654332	5E-8		0.0236619	[0.015-0.032] unit decrease	NR [11722792] (imputed)	N
605	chr6_mann_hap4	2724337	2724338	rs748543364	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Docosahexaenoic acid levels	115,006 European ancestry individuals	NA	6p21.33		rs748543364-AG	0.654332	7E-10		0.0264866	[0.018-0.035] unit decrease	NR [11722792] (imputed)	N
605	chr6_mann_hap4	2724401	2724402	rs28559870	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.33		rs28559870-C	0.824	3E-54				Affymetrix [10369434] (imputed)	N
605	chr6_mann_hap4	2724401	2724402	rs28559870	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.33	NR	rs28559870-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
605	chr6_mann_hap4	2724402	2724403	rs28436034	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCP5, MICA	rs28436034-G	NR	8E-9		0.022753	[0.015-0.03] unit increase	Affymetrix [323858] (imputed)	N
605	chr6_mann_hap4	2724402	2724403	rs28436034	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HCP5, MICA	rs28436034-G	NR	4E-8		0.0216205	[0.014-0.029] unit increase	Affymetrix [127266] (imputed)	N
605	chr6_mann_hap4	2724402	2724403	rs28436034	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCP5, MICA	rs28436034-G	NR	4E-11		0.02346	[0.016-0.03] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_mann_hap4	2724402	2724403	rs28436034	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCP5, MICA	rs28436034-G	NR	2E-13		0.0283594	[0.021-0.036] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_mann_hap4	2724762	2724763	rs9380254	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	6p21.33	MICA	rs9380254-C	0.061689	4E-16		0.03985305	[0.03-0.049] unit decrease	Affymetrix [93095623] (imputed)	N
605	chr6_mann_hap4	2725195	2725196	rs2853981	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.33	MICA	rs2853981-G	NR	5E-8	(women)	0.0250092	[0.016-0.034] unit decrease	Illumina [13520550] (imputed)	N
605	chr6_mann_hap4	2725470	2725471	rs41560824	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LRPAP1	5,361 Icelandic ancestry individuals	NA	6p21.33		rs41560824-G	0.0175	3E-261		2.24371	[2.12-2.37] unit increase	Illumina [7506463] (imputed)	N
605	chr6_mann_hap4	2725542	2725543	rs1131896	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	6p21.33	MICA	rs1131896-A	0.231391	1E-19		0.028329957	[0.022-0.034] unit increase	Affymetrix [93095623] (imputed)	N
605	chr6_mann_hap4	2725542	2725543	rs1131896	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	6p21.33	MICA	rs1131896-A	0.2312	1E-29		0.04771386	[0.039-0.056] unit decrease	Affymetrix [~ 2500000] (imputed)	N
605	chr6_mann_hap4	2725542	2725543	rs1131896	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	6p21.33	MICA	rs1131896-A	0.2312	2E-28		0.04672725	[0.038-0.055] unit increase	Affymetrix [~ 2500000] (imputed)	N
605	chr6_mann_hap4	2725731	2725732	rs2853977	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.33	MICA	rs2853977-T	NR	1E-10		0.0208107	[0.015-0.027] unit decrease	Illumina [13520550] (imputed)	N
605	chr6_mann_hap4	2725818	2725819	rs3828879	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCP5, MICA	rs3828879-T	NR	3E-10		0.0269729	[0.019-0.035] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_mann_hap4	2726461	2726462	rs112243036	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCP5, MICA	rs112243036-A	NR	1E-9		0.0293452	[0.02-0.039] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_mann_hap4	2726851	2726852	rs2256174	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	6p21.33	MICA, HCP5	rs2256174-A	0.4616	2E-7		0.0375	[0.023-0.052] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
605	chr6_mann_hap4	2726878	2726879	rs2256175	28041642	Carmona FD	2016-12-29	Am J Hum Genet	A Genome-wide Association Study Identifies Risk Alleles in Plasminogen and P4HA2 Associated with Giant Cell Arteritis.	Giant cell arteritis	2,134 European ancestry cases, 9,125 European ancestry controls	NA	6p21.33	HLA-B	rs2256175-?	NR	8E-6		1.18		Illumina [1844133] (imputed)	N
605	chr6_mann_hap4	2726878	2726879	rs2256175	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	6p21.33	NR	rs2256175-?		8E-35	(MICA)			Illumina [NR]	N
605	chr6_mann_hap4	2726958	2726959	rs2256183	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCP5, MICA	rs2256183-G	NR	1E-10		0.018139	[0.013-0.024] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_mann_hap4	2726958	2726959	rs2256183	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of white cells	171,996 European ancestry individuals	NA	6p21.33	HCP5, MICA	rs2256183-G	0.4973	1E-9		0.0210357	[0.014-0.028] unit increase	Affymetrix [~ 2500000] (imputed)	N
605	chr6_mann_hap4	2726958	2726959	rs2256183	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	6p21.33	MICA	rs2256183-A	0.45	8E-29		0.04	[NR] unit increase	Affymetrix, Illumina [2834208] (imputed)	N
605	chr6_mann_hap4	2727780	2727781	rs2853968	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic hepatitis C infection	273 European ancestry cases, 351,740 European ancestry controls, 7,110 East Asian ancestry cases, 169,588 East Asian ancestry controls	NA	6p21.33		rs2853968-G	NR	2E-10		0.1124	[0.078-0.147] unit increase	Affymetrix, Illumina [20457788] (imputed)	N
605	chr6_mann_hap4	2729146	2729147	rs2853975	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein B2M	5,353 Icelandic ancestry individuals	NA	6p21.33		rs2853975-T	0.2249	9E-19		0.18093	[0.14-0.22] unit increase	Illumina [7506463] (imputed)	N
605	chr6_mann_hap4	2729146	2729147	rs2853975	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCP5, MICA	rs2853975-T	NR	3E-9		0.0197511	[0.013-0.026] unit increase	Affymetrix [323123] (imputed)	N
605	chr6_mann_hap4	2729311	2729312	rs9266825	35215271	Almandil NB	2022-01-27	Pharmaceuticals (Basel)	Integration of Transcriptome and Exome Genotyping Identifies Significant Variants with Autism Spectrum Disorder.	Autism spectrum disorder	70 Arab ancestry cases, 132 Arab ancestry controls	NA	6p21.33	NA	rs9266825-A	0.4659	6E-6		0.3147	[0.1885-0.5253]	Illumina [243345]	N
605	chr6_mann_hap4	2729340	2729341	rs1882	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	6p21.33	MICA	rs1882-G	0.4676	1E-19		0.03244427	[0.025-0.039] unit decrease	Affymetrix [~ 2500000] (imputed)	N
605	chr6_mann_hap4	2729340	2729341	rs1882	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	6p21.33	MICA	rs1882-G	0.4671	5E-19		0.0315247	[0.025-0.038] unit increase	Affymetrix [~ 2500000] (imputed)	N
605	chr6_mann_hap4	2729559	2729560	rs9266834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	6p21.33		rs9266834-T	0.889775	2E-11		0.0441975	[0.031-0.057] unit decrease	NR [11722792] (imputed)	N
605	chr6_mann_hap4	2729559	2729560	rs9266834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	6p21.33		rs9266834-T	0.889775	5E-14		0.0490222	[0.036-0.062] unit decrease	NR [11722792] (imputed)	N
605	chr6_mann_hap4	2729559	2729560	rs9266834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6p21.33		rs9266834-T	0.889775	2E-11		0.0437642	[0.031-0.057] unit decrease	NR [11722792] (imputed)	N
605	chr6_mann_hap4	2729559	2729560	rs9266834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	6p21.33		rs9266834-T	0.889775	2E-11		0.0427432	[0.03-0.055] unit decrease	NR [11722792] (imputed)	N
605	chr6_mann_hap4	2729559	2729560	rs9266834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in IDL	115,082 European ancestry individuals	NA	6p21.33		rs9266834-T	0.889775	9E-15		0.0506081	[0.038-0.063] unit increase	NR [11722792] (imputed)	N
605	chr6_mann_hap4	2729559	2729560	rs9266834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	6p21.33		rs9266834-T	0.889775	3E-9		0.0392601	[0.026-0.052] unit increase	NR [11722792] (imputed)	N
605	chr6_mann_hap4	2729559	2729560	rs9266834	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCP5	rs9266834-A	NR	8E-9		0.0263611	[0.017-0.035] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_mann_hap4	2729559	2729560	rs9266834	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCP5	rs9266834-A	NR	1E-9		0.0303575	[0.021-0.04] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_mann_hap4	2731914	2731915	rs2596528	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCP5	rs2596528-C	NR	1E-19		0.0277879	[0.022-0.034] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_mann_hap4	2734303	2734304	rs113203074	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.33		rs113203074-C	0.959	8E-27				Affymetrix [10369434] (imputed)	N
605	chr6_mann_hap4	2734303	2734304	rs113203074	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCP5	rs113203074-A	NR	2E-9		0.0426261	[0.029-0.057] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_mann_hap4	2734876	2734877	rs73402222	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8+ and CD8dim T cell %leukocyte	3,668 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs73402222-C	0.34582	5E-9		0.1904	[0.13-0.25] unit decrease	Illumina [18430788] (imputed)	N
605	chr6_mann_hap4	2734876	2734877	rs73402222	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8+ T cell %T cell	3,668 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs73402222-C	0.34582	3E-9		0.1934	[0.13-0.26] unit decrease	Illumina [18430788] (imputed)	N
605	chr6_mann_hap4	2734876	2734877	rs73402222	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4+/CD8+ T cell	3,652 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs73402222-C	0.34555	2E-8		0.1905	[0.12-0.26] unit increase	Illumina [18427348] (imputed)	N
605	chr6_mann_hap4	2736195	2736196	rs17206736	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	MICA, HCP5	rs17206736-G	0.07673019	1E-26	(EA, MHC class I polypeptide-related sequence A)	0.8764	[0.72-1.03] unit decrease	Affymetrix [509946]	N
605	chr6_mann_hap4	2736211	2736212	rs2844511	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	MICA, HCP5	rs2844511-A	0.3969849	4E-119	(MHC class I polypeptide-related sequence A)	0.9218	[0.85-0.99] unit increase	Affymetrix [509946]	N
605	chr6_mann_hap4	2736790	2736790	rs113265260	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs113265260-TAC	0.035	1E-51	(MHC class I polypeptide-related sequence B, MICB.5102.55.3)	1.07	[0.93-1.21] unit increase	Affymetrix [10572788] (imputed)	N
605	chr6_mann_hap4	2736838	2736839	rs2516448	23482656	Chen D	2013-03-12	J Natl Cancer Inst	Genome-wide association study of susceptibility loci for cervical cancer.	Cervical cancer	1,034 European ancestry cases, 3,948 European ancestry controls	1,140 European ancestry cases, 1,058 European ancestry controls	6p21.33	MICA	rs2516448-?	NR	4E-18		1.42	[1.31-1.54]	Illumina [632668]	N
605	chr6_mann_hap4	2737829	2737830	rs4418214	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	6p21.33	HCP5	rs4418214-C	0.084923	7E-17		0.03656655	[0.028-0.045] unit decrease	Affymetrix [93095623] (imputed)	N
605	chr6_mann_hap4	2737829	2737830	rs4418214	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Number of common colds	43,826 European ancestry cases, 15,720 European ancestry controls	NA	6p21.33	NR	rs4418214-?	NR	1E-6		0.0345	[0.021-0.048] unit decrease	Illumina [at least 560000] (imputed)	N
605	chr6_mann_hap4	2737829	2737830	rs4418214	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	MICA, HCP5	rs4418214-C	0.06230848	2E-15	(EA, MHC class I polypeptide-related sequence A)	0.7104	[0.54-0.88] unit decrease	Affymetrix [509946]	N
605	chr6_mann_hap4	2737829	2737830	rs4418214	23935489	McLaren PJ	2013-07-25	PLoS Pathog	Association study of common genetic variants and HIV-1 acquisition in 6,300 infected cases and 7,200 controls.	HIV-1 susceptibility	6,334 European ancestry cases, 7,247 European ancestry controls	NA	6p21.33	HLA-C, HLA-B	rs4418214-C	NR	4E-11		1.52		Affymetrix, Illumina [~ 8000000] (imputed)	N
605	chr6_mann_hap4	2737829	2737830	rs4418214	21051598	Pereyra F	2010-11-04	Science	The major genetic determinants of HIV-1 control affect HLA class I peptide presentation.	HIV-1 control	516 European cases, 1,196 European controls, 341 African American cases, 892 African American controls, 117 Hispanic cases, 560 Hispanic controls	NA	6p21.33	MICA	rs4418214-C	0.075	1E-34	(EA)	4.4	[NR]	Illumina [1384048] (imputed)	N
605	chr6_mann_hap4	2739821	2739822	rs73402240	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.33		rs73402240-C	0.962	4E-8				Affymetrix [10369434] (imputed)	N
605	chr6_mann_hap4	2739821	2739822	rs73402240	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs73402240-C	0.962	2E-11				Affymetrix [10369434] (imputed)	N
605	chr6_mann_hap4	2739821	2739822	rs73402240	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCP5	rs73402240-T	NR	3E-13		0.0548397	[0.04-0.07] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_mann_hap4	2741442	2741443	rs116534628	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.33		rs116534628-C	0.916	1E-14				Affymetrix [10369434] (imputed)	N
605	chr6_mann_hap4	2741642	2741643	rs181785842	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCP5	rs181785842-C	NR	2E-9		0.0590849	[0.04-0.078] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_mann_hap4	2743283	2743284	rs9267057	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.33	intergenic	rs9267057-?		5E-9		1.1627907	[1.1-1.22]	Affymetrix, Illumina [NR]	N
605	chr6_mann_hap4	2746167	2746168	rs2516471	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	6p21.33	HCP5	rs2516471-A	0.062429	8E-72		0.09513792	[0.085-0.106] unit decrease	Affymetrix [93095623] (imputed)	N
605	chr6_mann_hap4	2747347	2747348	rs2263323	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MICA	5,360 Icelandic ancestry individuals	NA	6p21.33		rs2263323-T	0.1049	7E-192		0.829215	[0.77-0.88] unit decrease	Illumina [7506463] (imputed)	N
605	chr6_mann_hap4	2748264	2748266	rs199530775	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs199530775-C	0.038	2E-14	(MHC class I polypeptide-related sequence B, MICB.5102.55.3)	0.49	[0.37-0.61] unit increase	Affymetrix [10572788] (imputed)	N
605	chr6_mann_hap4	2748264	2748265	rs55957433	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCP5	rs55957433-G	NR	3E-8		0.0196371	[0.013-0.027] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_mann_hap4	2749506	2749507	rs7759215	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.33	NR	rs7759215-G	0.013	9E-13		0.564225	[0.41-0.72] unit increase	Affymetrix [up to 8900000] (imputed)	N
605	chr6_mann_hap4	2749506	2749507	rs7759215	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.33	NR	rs7759215-G	0.013	5E-6	(women)	0.575344	[0.33-0.82] unit increase	Affymetrix [up to 8900000] (imputed)	N
605	chr6_mann_hap4	2751498	2751499	rs2596466	23417110	Tin A	2013-02-16	Hum Genet	Genome-wide association study identified the human leukocyte antigen region as a novel locus for plasma beta-2 microglobulin.	Beta-2 microglubulin plasma levels	6,728 European ancestry individuals		6p21.33	MICA	rs2596466-C	0.07	2E-12		0.05	[0.034-0.066] unit decrease	Affymetrix [2500000] (imputed)	N
605	chr6_mann_hap4	2751501	2751502	rs3128981	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCP5	rs3128981-G	NR	3E-8		0.0188491	[0.012-0.026] unit decrease	Affymetrix [323858] (imputed)	N
605	chr6_mann_hap4	2751501	2751502	rs3128981	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	6p21.33	HCP5	rs3128981-G	0.294246	9E-26		0.025565179	[0.021-0.03] unit increase	Affymetrix [93095623] (imputed)	N
605	chr6_mann_hap4	2752188	2752189	rs190497944	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Iritis	110 East Asian ancestry cases, 175,543 East Asian ancestry controls	NA	6p21.33		rs190497944-C	0.001120244	5E-9		27.140694	[18.06-36.22] unit increase	Illumina [13429677] (imputed)	N
606	chr6_mann_hap4	2753212	2753213	rs2516470	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	6p21.33	HCP5	rs2516470-C	0.663227	4E-13		0.017850922	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
606	chr6_mann_hap4	2753212	2753213	rs2516470	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	6p21.33	NR	rs2516470-?	NR	9E-10	(MIC-A)	0.992294	[0.67-1.31] unit decrease	Illumina [11901634] (imputed)	N
606	chr6_mann_hap4	2753212	2753213	rs2516470	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	HCP5, LINC01149	rs2516470-G	0.3482412	5E-23	(EA, MHC class I polypeptide-related sequence A)	0.4412	[0.36-0.53] unit increase	Affymetrix [509946]	N
606	chr6_mann_hap4	2753460	2753461	rs2524277	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TFF3	5,365 Icelandic ancestry individuals	NA	6p21.33		rs2524277-A	0.0351	2E-13		0.363897	[0.27-0.46] unit increase	Illumina [7506463] (imputed)	N
606	chr6_mann_hap4	2753460	2753461	rs2524277	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TFF3	5,364 Icelandic ancestry individuals	NA	6p21.33		rs2524277-A	0.0351	2E-15		0.383348	[0.29-0.48] unit increase	Illumina [7506463] (imputed)	N
606	chr6_mann_hap4	2753460	2753461	rs2524277	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	HCP5	rs2524277-A	0.062	2E-19	(Trefoil factor 3, TFF3.4721.54.2)	0.46	[0.36-0.56] unit increase	Affymetrix [10572788] (imputed)	N
606	chr6_mann_hap4	2753460	2753461	rs2524277	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	NFKBIL1	rs2524277-A	0.03869347	1E-12	(EA, Trefoil factor 3)	0.7819	[0.57-0.99] unit increase	Affymetrix [509946]	N
606	chr6_mann_hap4	2753639	2753640	rs2844520	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6p21.33		rs2844520-?	NR	1E-10		0.870197	[0.83-0.91]	NR [685523]	N
606	chr6_mann_hap4	2753709	2753710	rs9469003	21801394	Genin E	2011-07-29	Orphanet J Rare Dis	Genome-wide association study of Stevens-Johnson Syndrome and Toxic Epidermal Necrolysis in Europe.	Drug-induced Stevens-Johnson syndrome or toxic epidermal necrolysis (SJS/TEN)	424 European ancestry cases, 1,881 European ancestry controls	NA	6p21.33	HCP5	rs9469003-C	0.15	2E-9		1.73	[1.44-2.08]	Illumina [268914]	N
606	chr6_mann_hap4	2754146	2754147	rs2524276	22864933	O'Donnell PH	2012-01-03	Cancer	Identification of novel germline polymorphisms governing capecitabine sensitivity.	Capecitabine sensitivity	Up to 84 East Asian ancestry lymphoblastoid cell lines, up to 164 European ancestry lymphoblastoid cell lines, up to 173 African ancestry lymphoblastoid cell lines, up to 82 African American lymphoblastoid cell lines	NA	6p21.33	intergenic	rs2524276-?	NR	6E-6				NR [~ 2000000]	N
606	chr6_mann_hap4	2755164	2755165	rs61447909	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Squamous cell carcinoma	9,674 European ancestry cases, 625,657 European ancestry controls	NA	6p21.33	LINC01149	rs61447909-A	NR	2E-6		1.1111112	[1.06-1.16]	Affymetrix, Illumina [up to 9061544] (imputed)	N
606	chr6_mann_hap4	2755164	2755165	rs61447909	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Keratinocyte cancer (MTAG)	at least 18,538 European ancestry cases, at least 340,302 European ancestry controls	NA	6p21.33	LINC01149	rs61447909-A	0.098186	4E-13		1.098901	[1.08-1.14]	Affymetrix [7600000] (imputed)	N
606	chr6_mann_hap4	2755447	2755448	rs2844512	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cervical cancer	967 East Asian ancestry cases, 60,614 East Asian ancestry controls	NA	6p21.33		rs2844512-G	0.576319779	1E-12		0.34585676	[0.25-0.44] unit decrease	Illumina [13381745] (imputed)	N
606	chr6_mann_hap4	2756286	2756287	rs2844510	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls	NA	6p21.33	MICB, MICA	rs2844510-T	0.11	2E-6	(conditioned on rs2596464 and rs2855812)	0.09	[0.051-0.129] unit increase	Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
606	chr6_mann_hap4	2756399	2756400	rs3093958	35074870	Chia R	2022-02-01	Proc Natl Acad Sci U S A	Identification of genetic risk loci and prioritization of genes and pathways for myasthenia gravis: a genome-wide association study.	Early-onset myasthenia gravis	595 European ancestry cases, 2,718 European ancestry controls	NA	6p21.33		rs3093958-G	0.094	4E-42		4.49	[3.62-5.57]	Illumina [24006246] (imputed)	N
606	chr6_mann_hap4	2756399	2756400	rs3093958	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p21.33	NR	rs3093958-?	NR	6E-7		4.984	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
606	chr6_mann_hap4	2756402	2756403	rs6928810	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	6p21.33	HCP5, LINC01149	rs6928810-T	0.246387	1E-14		0.022360196	[0.017-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
606	chr6_mann_hap4	2758305	2758306	rs34624527	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	6p21.33	HCP5, LINC01149	rs34624527-A	0.4973	2E-15		0.02871944	[0.022-0.036] unit increase	Affymetrix [~ 2500000] (imputed)	N
606	chr6_mann_hap4	2758821	2758822	rs2596465	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mononucleosis	17,457 European ancestry cases, 68,446 European ancestry controls	NA	6p21.33	MICA, MICB, HLA	rs2596465-T	0.47	2E-9		1.08	[1.06-1.09]	Illumina [at least 560000] (imputed)	N
606	chr6_mann_hap4	2758834	2758835	rs2596464	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma (childhood onset)	7,131 European ancestry cases, 13,631 European ancestry controls, 1,239 Japanese ancestry cases, 3,976 Japanese ancestry controls, 606 Latino cases, 792 Latino controls	NA	6p21.33	MICB, MICA	rs2596464-C	NR	1E-8		1.12	[1.08-1.17]	Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
606	chr6_mann_hap4	2758834	2758835	rs2596464	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls	NA	6p21.33	MICA, MICB	rs2596464-C	0.48	2E-13		0.09	[0.07-0.11] unit increase	Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
606	chr6_mann_hap4	2759578	2759579	rs56263516	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Uterine fibroids	21,024 European ancestry cases, 237,694 European ancestry controls, 14,475 East Asian ancestry cases, 65,733 East Asian ancestry controls	NA	6p21.33		rs56263516-G	NR	4E-8		0.0661	[0.042-0.09] unit increase	Affymetrix, Illumina [25795146] (imputed)	N
606	chr6_mann_hap4	2759578	2759579	rs56263516	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCP5, LINC01149	rs56263516-G	NR	2E-8		0.0301139	[0.02-0.041] unit increase	Affymetrix [323858] (imputed)	N
606	chr6_mann_hap4	2759578	2759579	rs56263516	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HCP5, LINC01149	rs56263516-G	NR	3E-8		0.0297948	[0.019-0.04] unit increase	Affymetrix [127266] (imputed)	N
606	chr6_mann_hap4	2759680	2759681	rs9267091	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.33	LINC01149, HCP5	rs9267091-A	0.228	9E-6		0.0351	[0.02-0.051] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
606	chr6_mann_hap4	2760198	2760199	rs2516466	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6p21.33	NR	rs2516466-G	0.5538	4E-20		1.0564125	[1.04-1.07]	Affymetrix [15688218] (imputed)	N
606	chr6_mann_hap4	2760603	2760604	rs2523696	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	6p21.33	LINC01149	rs2523696-T	0.4403	9E-15		0.02759642	[0.021-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
606	chr6_mann_hap4	2760782	2760783	rs2516465	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.33	NR	rs2516465-T	0.095	6E-48	(conditional)	2.113	[2.01-2.21]	Illumina [11270530] (imputed)	N
606	chr6_mann_hap4	2760941	2760942	rs3131627	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28+ CD45RA+ CD8+ T cell Absolute Count	3,408 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs3131627-G	0.49139	2E-9		0.1259	[0.085-0.167] unit increase	Illumina [18340221] (imputed)	N
606	chr6_mann_hap4	2761231	2761232	rs9267098	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	6p21.33	HCP5	rs9267098-G	0.2684	8E-31		0.04978207	[0.041-0.058] unit decrease	Affymetrix [~ 2500000] (imputed)	N
606	chr6_mann_hap4	2761728	2761729	rs4458721	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.33	NR	rs4458721-T	0.249	3E-10		1.181	[1.13-1.23]	Illumina [11270530] (imputed)	N
606	chr6_mann_hap4	2761753	2761754	rs549219764	31577861	Dai J	2019-10-31	Int J Cancer	Genome-wide association study of INDELs identified four novel susceptibility loci associated with lung cancer risk.	Lung cancer	20,871 European ancestry cases, 15,971 European ancestry controls, 2,331 Chinese ancestry cases, 3,077 Chinese ancestry controls	NA	6p21.33	HCP5	rs549219764-D	0.2	2E-9		1.11	[1.07-1.15]	Illumina [484196]	N
606	chr6_mann_hap4	2762867	2762868	rs2524280	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	HLA-C, MICA, Y_RNA, HLA-B, XXbac-BPG248L24.12, MIR6891, HLA-S, XXbac-BPG181B23.7, HCP5, LINC01149, XXbac-BPG181B23.6	rs2524280-A	0.07437186	3E-24	(EA, MHC class I polypeptide-related sequence A)	0.8388	[0.68-1] unit decrease	Affymetrix [509946]	N
606	chr6_mann_hap4	2763333	2763334	rs9501130	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p21.33	LINC01149	rs9501130-G	0.822	2E-11		0.099	[0.07-0.128] unit increase	Affymetrix, Illumina [7374092] (imputed)	N
606	chr6_mann_hap4	2763417	2763418	rs2596459	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD45RA+ CD8+ T cell %T cell	3,427 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs2596459-T	0.49008	2E-8		0.1499	[0.098-0.202] unit increase	Illumina [18349913] (imputed)	N
606	chr6_mann_hap4	2763619	2763620	rs10947210	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	6p21.33		rs10947210-T	0.923561	3E-10		0.0453373	[0.031-0.059] unit decrease	NR [11722792] (imputed)	N
606	chr6_mann_hap4	2763619	2763620	rs10947210	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	6p21.33		rs10947210-T	0.923537	2E-10		0.0471765	[0.033-0.062] unit increase	NR [11722792] (imputed)	N
606	chr6_mann_hap4	2764687	2764688	rs3131623	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p21.33	MICB, MICA, HLA	rs3131623-T	0.85	2E-15		1.1	[1.09-1.12]	Illumina [at least 560000] (imputed)	N
606	chr6_mann_hap4	2764942	2764943	rs3130901	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	6p21.33	NR	rs3130901-T	NR	3E-14		0.0315719	[0.024-0.04] unit increase	Affymetrix [16832071] (imputed)	N
606	chr6_mann_hap4	2766115	2766116	rs2259384	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	6p21.33	HCP5	rs2259384-C	0.484261	6E-11		0.01838512	[0.013-0.024] unit increase	Affymetrix [93095623] (imputed)	N
606	chr6_mann_hap4	2767174	2767175	rs2263316	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Prostate cancer	7,438 White British ancestry cases, 118,206 White British ancestry controls	NA	6p21.33		rs2263316-?	NR	3E-7		1.09455	[1.06-1.13]	NR [680312]	N
606	chr6_mann_hap4	2767174	2767175	rs2263316	29185836	Chen MH	2017-11-29	Platelets	Exome-chip meta-analysis identifies association between variation in ANKRD26 and platelet aggregation.	Platelet aggregation	3,664 European ancestry individuals, 549 Old Order Amish (founder/genetic isolate) individuals	1,184 European ancestry individuals, 613 African American individuals	6p21.33	HCP5	rs2263316-G	0.65	1E-6	(ADP high 2)	0.123	[0.074-0.172] unit increase	Illumina [129094]	N
606	chr6_mann_hap4	2767177	2767178	rs9469012	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	MICA, XXbac-BPG181B23.7, HCP5, Y_RNA, LINC01149, XXbac-BPG181B23.6	rs9469012-A	0.1170535	1E-24	(MHC class I polypeptide-related sequence A)	0.6944	[0.57-0.82] unit decrease	Affymetrix [509946]	N
606	chr6_mann_hap4	2767481	2767483	rs200779223	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	6p21.33	HCP5	rs200779223-C	0.1305	2E-21		0.05074718	[0.04-0.061] unit increase	Affymetrix [~ 2500000] (imputed)	N
606	chr6_mann_hap4	2767481	2767481	rs376918999	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	6p21.33		rs376918999-CAT	0.871308	2E-10		0.0374657	[0.026-0.049] unit increase	NR [11722792] (imputed)	N
606	chr6_mann_hap4	2767481	2767481	rs376918999	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	6p21.33		rs376918999-CAT	0.871308	1E-11		0.0394654	[0.028-0.051] unit increase	NR [11722792] (imputed)	N
606	chr6_mann_hap4	2767484	2767485	rs9267119	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	6p21.33	NR	rs9267119-C	NR	1E-6		1.098901	[NR]	Illumina [7158791] (imputed)	N
606	chr6_mann_hap4	2768398	2768399	rs3131621	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (father's age at death or father's attained age)	up to 699,000 European ancestry individuals	NA	6p21.33	NR	rs3131621-A		9E-9				Illumina [458865]	N
606	chr6_mann_hap4	2768398	2768399	rs3131621	29227965	Pilling LC	2017-12-01	Aging (Albany NY)	Human longevity: 25 genetic loci associated in 389,166 UK biobank participants.	Parental longevity (father's attained age)	415,311 British ancestry individuals	NA	6p21.33	MICA, MICB	rs3131621-A	0.629	4E-8		0.0124	[0.0081-0.0167] unit decrease	Affymetrix [11535925] (imputed)	N
606	chr6_mann_hap4	2768398	2768399	rs3131621	29227965	Pilling LC	2017-12-01	Aging (Albany NY)	Human longevity: 25 genetic loci associated in 389,166 UK biobank participants.	Parental longevity (combined parental attained age, Martingale residuals)	389,166 British ancestry individuals	NA	6p21.33	MICA, MICB	rs3131621-A	NR	9E-8			[NR]	Affymetrix [11535925] (imputed)	N
606	chr6_mann_hap4	2769865	2769866	rs3093956	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation Hannum age acceleration	34,449 European ancestry individuals	NA	6p21.33	NR	rs3093956-C	0.1858	9E-10		0.2428	[0.17-0.32] unit increase	Affymetrix, Illumina [7565493] (imputed)	N
606	chr6_mann_hap4	2770274	2770275	rs113059562	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.33		rs113059562-C	0.985	2E-24				Affymetrix [10369434] (imputed)	N
606	chr6_mann_hap4	2770293	2770294	rs9267123	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (anilides)	83,218 European ancestry cases, 96,592 European ancestry controls, 4,421 East Asian ancestry cases, 174,305 East Asian ancestry controls	NA	6p21.33		rs9267123-C	NR	4E-14		0.0685	[0.051-0.086] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
606	chr6_mann_hap4	2770293	2770294	rs9267123	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCP5	rs9267123-C	NR	4E-11		0.0255347	[0.018-0.033] unit increase	Affymetrix [321016] (imputed)	N
606	chr6_mann_hap4	2770293	2770294	rs9267123	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	6p21.33	NR	rs9267123-C	0.11	2E-19		1.23	[1.19-1.27]	Illumina [8468885] (imputed)	N
606	chr6_mann_hap4	2770293	2770294	rs9267123	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	6p21.33	HCP5	rs9267123-C	0.1438	4E-6		0.0472	[0.027-0.067] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
606	chr6_mann_hap4	2771874	2771875	rs2596472	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6p21.33	HCP5	rs2596472-A	0.742388	2E-19		0.026717115	[0.021-0.033] unit increase	Affymetrix [93095623] (imputed)	N
606	chr6_mann_hap4	2771894	2771895	rs77349273	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p21.33	NR	rs77349273-T	0.097	2E-10	(IFNAR2_of_CD20p)			Illumina [5084123] (imputed)	N
606	chr6_mann_hap4	2811120	2811121	rs188935761	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 142,336 Japanese ancestry controls	NA	6p21.33	MICB	rs188935761-?	NR	5E-6		0.613998	[0.35-0.88] unit increase	Illumina [19707525] (imputed)	N
606	chr6_mann_hap4	2812500	2812501	rs2534664	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MICB	rs2534664-A	NR	2E-13		0.0226003	[0.017-0.029] unit decrease	Affymetrix [323123] (imputed)	N
606	chr6_mann_hap4	2814712	2814713	rs2855811	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.33	NR	rs2855811-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
606	chr6_mann_hap4	2815640	2815641	rs2855812	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.33	NR	rs2855812-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
606	chr6_mann_hap4	2815640	2815641	rs2855812	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma and major depressive disorder	46,802 European ancestry asthma cases, 59,851 European ancestry major depressive disorder cases, 460,635 European ancestry controls	NA	6p21.33	AIF1, APOM, ATP6V1G2, BAG6, C6orf15, C6orf25, C6orf47, C6orf48, CDSN, CLIC1, CSNK2B, DDAH2, DDX39B, HCG26, HCG27, HCP5, HLA-B, HSPA1A, HSPA1B, HSPA1L, LSM2, LST1, LTA, LTB, LY6G5B, LY6G5C, LY6G6C, LY6G6D, LY6G6E, LY6G6F, MCCD1, MICA, MICB, MIR4646, MIR6832, MIR6891, MSH5, MSH5-SAPCD1, NCR3, NEU1, NFKBIL1, POU5F1, PRRC2A, PSORS1C1, PSORS1C2, PSORS1C3, SAPCD1, SLC44A4, SNORA38, SNORD48, SNORD52, SNORD84, SNORD117, TCF19, TNF, VARS, VWA7, HLA-C, CCHCR1, GPANK1, ABHD16A	rs2855812-?	NR	2E-16				Affymetrix [up to 13554551] (imputed)	N
606	chr6_mann_hap4	2815640	2815641	rs2855812	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma (childhood onset)	9,676 European ancestry cases, 347,481 European ancestry controls	NA	6p21.33	ABHD16A, AIF1, APOM, ATP6V1G2, ATP6V1G2-DDX39B, BAG6, C6orf15, C6orf25, C6orf47, C6orf48, CCHCR1, CDSN, CLIC1, CSNK2B, DDAH2, DDX39B, GPANK1, HCG26, HCG27, HCP5, HLA-B, HLA-C, HSPA1A, HSPA1B, HSPA1L, LSM2, LST1, LTA, LTB, LY6G5B, LY6G5C, LY6G6C, LY6G6D, LY6G6E, LY6G6F, MCCD1, MICA, MICB, MIR4646, MIR6832, MIR6891, MSH5, MSH5-SAPCD1, NCR3, NEU1, NFKBIL1, POU5F1, PRRC2A, PSORS1C1, PSORS1C2, PSORS1C3, SAPCD1, SLC44A4, SNORA38, SNORD48, SNORD52, SNORD84, SNORD117, TCF19, TNF, VARS, VWA7	rs2855812-?	NR	4E-7		0.118096	[0.071-0.165] unit decrease	Affymetrix [8274727] (imputed)	N
606	chr6_mann_hap4	2815640	2815641	rs2855812	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs2855812-G	0.7990625	8E-9	(PDIA5, 5593_11_3)	0.1749456	[0.12-0.23] unit decrease	Illumina [> 1000000] (imputed)	N
606	chr6_mann_hap4	2815640	2815641	rs2855812	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs2855812-G	0.7990625	8E-14	(C4A C4B, 4481_34_2)	0.23044567	[0.17-0.29] unit increase	Illumina [> 1000000] (imputed)	N
606	chr6_mann_hap4	2815640	2815641	rs2855812	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs2855812-G	0.7990625	7E-11	(C2, 3186_2_2)	0.20260093	[0.14-0.26] unit decrease	Illumina [> 1000000] (imputed)	N
606	chr6_mann_hap4	2815640	2815641	rs2855812	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs2855812-G	0.7990625	5E-9	(PILRA, 8683_119_3)	0.17610262	[0.12-0.24] unit decrease	Illumina [> 1000000] (imputed)	N
606	chr6_mann_hap4	2815640	2815641	rs2855812	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs2855812-G	0.7990625	3E-25	(ISG15, 14148_2_3)	0.31585807	[0.26-0.37] unit decrease	Illumina [> 1000000] (imputed)	N
606	chr6_mann_hap4	2815640	2815641	rs2855812	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs2855812-G	0.7990625	2E-9	(RACGAP1, 13587_10_3)	0.18150227	[0.12-0.24] unit decrease	Illumina [> 1000000] (imputed)	N
606	chr6_mann_hap4	2815640	2815641	rs2855812	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs2855812-G	0.7990625	2E-25	(MICB, 9328_55_3)	0.31198063	[0.25-0.37] unit increase	Illumina [> 1000000] (imputed)	N
606	chr6_mann_hap4	2815640	2815641	rs2855812	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs2855812-G	0.7990625	2E-19	(FTMT, 8048_9_3)	0.27116117	[0.21-0.33] unit increase	Illumina [> 1000000] (imputed)	N
606	chr6_mann_hap4	2815640	2815641	rs2855812	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs2855812-G	0.7990625	2E-126	(MICB, 5102_55_3)	0.69572484	[0.64-0.75] unit increase	Illumina [> 1000000] (imputed)	N
606	chr6_mann_hap4	2815640	2815641	rs2855812	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs2855812-G	0.7990625	1E-10	(CREB3L4, 11308_8_3)	0.18975821	[0.13-0.25] unit decrease	Illumina [> 1000000] (imputed)	N
606	chr6_mann_hap4	2815640	2815641	rs2855812	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls, 2,149 African ancestry cases, 6,055 African ancestry controls, 1,239 Japanese ancestry cases, 3,976 Japanese ancestry controls, 606 Latino cases, 792 Latino controls	NA	6p21.33	MICB, HCP5, MCCD1	rs2855812-T	0.23	9E-12		1.1	[1.07-1.13]	Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
606	chr6_mann_hap4	2815640	2815641	rs2855812	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls	NA	6p21.33	MICB, MICA, MCCD1	rs2855812-T	0.23	3E-10		0.09	[0.07-0.11] unit increase	Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
606	chr6_mann_hap4	2815640	2815641	rs2855812	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p21.33	NR	rs2855812-?	NR	1E-16		0.213	[0.16-0.26] unit increase	Illumina [at least 560000] (imputed)	N
606	chr6_mann_hap4	2815640	2815641	rs2855812	28235828	Traglia M	2017-04-03	G3 (Bethesda)	Independent Maternal and Fetal Genetic Effects on Midgestational Circulating Levels of Environmental Pollutants.	Midgestational circulating levels of PBDEs	329 Hispanic mothers, 273 European ancestry mothers, 122 Asian ancestry mothers, 23 South Asian ancestry mothers, 21 African American mothers, 22 other ancestry mothers	NA	6p21.33	MICB	rs2855812-?		8E-7	(BDE-47)	0.33	[0.19-0.47] unit decrease	Affymetrix [629686]	N
606	chr6_mann_hap4	2815640	2815641	rs2855812	28235828	Traglia M	2017-04-03	G3 (Bethesda)	Independent Maternal and Fetal Genetic Effects on Midgestational Circulating Levels of Environmental Pollutants.	Midgestational circulating levels of PBDEs	329 Hispanic mothers, 273 European ancestry mothers, 122 Asian ancestry mothers, 23 South Asian ancestry mothers, 21 African American mothers, 22 other ancestry mothers	NA	6p21.33	MICB	rs2855812-?		3E-7	(BDE-100)	0.35	[0.21-0.49] unit decrease	Affymetrix [629686]	N
606	chr6_mann_hap4	2815640	2815641	rs2855812	28235828	Traglia M	2017-04-03	G3 (Bethesda)	Independent Maternal and Fetal Genetic Effects on Midgestational Circulating Levels of Environmental Pollutants.	Midgestational circulating levels of PBDEs	329 Hispanic mothers, 273 European ancestry mothers, 122 Asian ancestry mothers, 23 South Asian ancestry mothers, 21 African American mothers, 22 other ancestry mothers	NA	6p21.33	MICB	rs2855812-?		2E-6	(Sum PBDE)	0.29	[0.17-0.41] unit decrease	Affymetrix [629686]	N
606	chr6_mann_hap4	2815640	2815641	rs2855812	21946350	Soler Artigas M	2011-09-25	Nat Genet	Genome-wide association and large-scale follow up identifies 16 new loci influencing lung function.	Pulmonary function	48,201 European ancestry individuals	46,411 European ancestry individuals	6p21.33	MICB	rs2855812-T	NR	2E-7	(FEV1)	0.03	[0.018-0.042] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
606	chr6_mann_hap4	2816877	2816878	rs3134900	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MICB	5,365 Icelandic ancestry individuals	NA	6p21.33		rs3134900-G	0.08239	7E-220		1.01394	[0.95-1.08] unit decrease	Illumina [7506463] (imputed)	N
606	chr6_mann_hap4	2816877	2816878	rs3134900	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	MICB	rs3134900-G	0.14	3E-101	(MHC class I polypeptide-related sequence B, MICB.5102.55.3)	0.71	[0.65-0.77] unit decrease	Affymetrix [10572788] (imputed)	N
606	chr6_mann_hap4	2817740	2817741	rs41293883	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Eczema	7,884 European ancestry cases, 239,773 European ancestry controls	21,000 cases, 96,000 controls	6p21.33	HLA-DQB1	rs41293883-?	0.95847	2E-14		1.4541224	[1.33-1.6]	Affymetrix [15688218] (imputed)	N
606	chr6_mann_hap4	2817976	2817977	rs41273040	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	6p21.33	MICB	rs41273040-G	0.976386	4E-18		0.0571663	[0.044-0.07] unit decrease	Affymetrix [NR] (imputed)	N
606	chr6_mann_hap4	2817976	2817977	rs41273040	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.33	NR	rs41273040-?	NR	6E-9				Affymetrix [~ 8270000] (imputed)	N
606	chr6_mann_hap4	2818047	2818048	rs3131638	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	6p21.33	NR	rs3131638-G	0.7739	8E-10		1.0449321	[1.03-1.06]	Affymetrix, Illumina [NR] (imputed)	N
606	chr6_mann_hap4	2818406	2818407	rs3132468	22001756	Khor CC	2011-10-16	Nat Genet	Genome-wide association study identifies susceptibility loci for dengue shock syndrome at MICB and PLCE1.	Dengue shock syndrome	2,008 Vietnamese ancestry child cases, 2,018 Vietnamese ancestry child controls	1,737 Vietnamese ancestry child cases, 2,934 Vietnamese ancestry child controls	6p21.33	MICB	rs3132468-?	0.13	4E-11		1.34	[1.23-1.46]	Illumina [481342]	N
606	chr6_mann_hap4	2818575	2818576	rs9380260	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MICB	rs9380260-A	NR	1E-12		0.0271773	[0.02-0.035] unit decrease	Affymetrix [323123] (imputed)	N
606	chr6_mann_hap4	2819217	2819218	rs62395355	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.33		rs62395355-C	0.821	9E-12				Affymetrix [10369434] (imputed)	N
606	chr6_mann_hap4	2819217	2819218	rs62395355	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MICB	rs62395355-A	NR	4E-12		0.0253688	[0.018-0.033] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_mann_hap4	2819217	2819218	rs62395355	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	MICB	rs62395355-A	NR	8E-12		0.0250776	[0.018-0.032] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_mann_hap4	2819217	2819218	rs62395355	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	MICB	rs62395355-A	NR	3E-10		0.0233476	[0.016-0.031] unit increase	Affymetrix [321169] (imputed)	N
606	chr6_mann_hap4	2819378	2819379	rs3130614	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	6p21.33	NR	rs3130614-A	0.119161214504899	1E-11		0.013812465	[0.0098-0.0178] unit decrease	NR [NR]	N
606	chr6_mann_hap4	2819378	2819379	rs3130614	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	6p21.33	NR	rs3130614-A	0.119161214504899	9E-11		0.017454144	[0.012-0.023] unit decrease	NR [NR]	N
606	chr6_mann_hap4	2819378	2819379	rs3130614	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	6p21.33	NR	rs3130614-A	0.119161214504899	1E-10		0.014875911	[0.01-0.019] unit decrease	NR [NR]	N
606	chr6_mann_hap4	2819378	2819379	rs3130614	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	6p21.33	NR	rs3130614-A	0.119161214504899	1E-11		0.011892368	[0.0085-0.0153] unit decrease	NR [NR]	N
606	chr6_mann_hap4	2819378	2819379	rs3130614	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	6p21.33	MICB	rs3130614-T	NR	3E-10		0.19759	[0.14-0.26] unit increase	Illumina [at least 950000] (imputed)	N
606	chr6_mann_hap4	2819378	2819379	rs3130614	26291516	Miller FW	2015-08-20	Genes Immun	Genome-wide association study identifies HLA 8.1 ancestral haplotype alleles as major genetic risk factors for myositis phenotypes.	Myositis	1,710 European ancestry cases, 4,724 European ancestry controls	NA	6p21.33	MICB	rs3130614-A	NR	4E-48		2.31	[NR]	Illumina [NR] (imputed)	N
606	chr6_mann_hap4	2819774	2819775	rs2844498	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MICB	rs2844498-T	NR	7E-13		0.0226459	[0.016-0.029] unit increase	Affymetrix [323858] (imputed)	N
606	chr6_mann_hap4	2819774	2819775	rs2844498	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	MICB	rs2844498-T	NR	8E-12		0.0215973	[0.015-0.028] unit increase	Affymetrix [127266] (imputed)	N
606	chr6_mann_hap4	2821869	2821870	rs9267431	33692975	Buda P	2021-02-22	Front Pediatr	Association Between rs12037447, rs146732504, rs151078858, rs55723436, and rs6094136 Polymorphisms and Kawasaki Disease in the Population of Polish Children.	Kawasaki disease	119 European ancestry cases, 6,071 European ancestry controls	NA	6p21.33	MICB	rs9267431-A	0.1194	2E-6		2.113	1.547-2.886	Illumina [164395]	N
606	chr6_mann_hap4	2821904	2821905	rs2246618	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MICB	rs2246618-T	NR	2E-11		0.0226591	[0.016-0.029] unit decrease	Affymetrix [323858] (imputed)	N
606	chr6_mann_hap4	2821904	2821905	rs2246618	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume (adjusted for hypertension)	46,055 European ancestry individuals, 2,469 African American individuals	NA	6p21.33	MICB	rs2246618-C	0.3118	7E-6		0.0286	[0.016-0.041] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
606	chr6_mann_hap4	2821904	2821905	rs2246618	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume (adjusted for hypertension)	46,055 European ancestry individuals	NA	6p21.33	MICB	rs2246618-C	0.3118	4E-6		0.029	[0.017-0.041] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
606	chr6_mann_hap4	2821904	2821905	rs2246618	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	48,454 European ancestry individuals	NA	6p21.33	MICB	rs2246618-C	0.3118	7E-7		0.0307	[0.019-0.043] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
606	chr6_mann_hap4	2821904	2821905	rs2246618	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	2,516 African American individuals, 48,454 European ancestry individuals	NA	6p21.33	MICB	rs2246618-C	0.3118	2E-6		0.03	[0.018-0.042] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
606	chr6_mann_hap4	2822563	2822564	rs3132463	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MICB	rs3132463-T	NR	5E-9		0.0213533	[0.014-0.028] unit increase	Affymetrix [323123] (imputed)	N
606	chr6_mann_hap4	2823587	2823588	rs3132461	28806749	Leo PJ	2017-08-14	PLoS Genet	Defining the genetic susceptibility to cervical neoplasia-A genome-wide association study.	Cervical cancer	2,866 European ancestry cases, 6,481 European ancestry controls	NA	6p21.33	MICB, MCCD1	rs3132461-G	NR	2E-13		1.358	[NR]	Illumina [10863230] (imputed)	N
606	chr6_mann_hap4	2824011	2824012	rs3132459	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MICB	rs3132459-C	NR	4E-8		0.0179194	[0.012-0.024] unit increase	Affymetrix [321016] (imputed)	N
606	chr6_mann_hap4	2824190	2824190	rs5875324	30787463	Escala-Garcia M	2019-02-21	Br J Cancer	Genome-wide association study of germline variants and breast cancer-specific mortality.	Breast cancer specific mortality in breast cancer	7,697 European ancestry cases, 88,964 European ancestry controls	NA	6p21.33	NR	rs5875324-?	NR	2E-6		0.8744475	[0.83-0.92]	Affymetrix, Illumina [~ 10400000] (imputed)	N
606	chr6_mann_hap4	2824219	2824220	rs2516399	21738478	Okada Y	2011-06-30	PLoS Genet	Identification of nine novel loci associated with white blood cell subtypes in a Japanese population.	White blood cell types	8,794 Japanese ancestry individuals	5,998 Japanese ancestry individuals	6p21.33	MHC	rs2516399-A	0.81	2E-12	(eosinophil count)	0.105	[0.08-0.14] unit increase	Illumina [2178645] (imputed)	N
606	chr6_mann_hap4	2826062	2826063	rs2844495	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG16N22.5	rs2844495-G	NR	2E-18		0.0261655	[0.02-0.032] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_mann_hap4	2826062	2826063	rs2844495	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG16N22.5	rs2844495-G	NR	2E-18		0.0261197	[0.02-0.032] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_mann_hap4	2826062	2826063	rs2844495	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG16N22.5	rs2844495-G	NR	1E-10		0.0210221	[0.015-0.027] unit decrease	Affymetrix [323123] (imputed)	N
606	chr6_mann_hap4	2826062	2826063	rs2844495	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG16N22.5	rs2844495-G	NR	3E-16		0.024738	[0.019-0.031] unit increase	Affymetrix [321169] (imputed)	N
606	chr6_mann_hap4	2826132	2826133	rs62397979	31320639	Hillary RF	2019-07-18	Nat Commun	Genome and epigenome wide studies of neurological protein biomarkers in the Lothian Birth Cohort 1936.	Neurological blood protein biomarker levels	750 European ancestry individuals	NA	6p21.33	XXbac-BPG16N22.5	rs62397979-G	0.0469	1E-26	(Alpha-2-MRAP)	1.36939	[1.12-1.62] unit increase	Illumina [8683751] (imputed)	N
606	chr6_mann_hap4	2826626	2826627	rs17200698	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	Y_RNA, MICB, PPIAP9, XXbac-BPG16N22.5, RPL15P4, MCCD1, ATP6V1G2, ATP6V1G2-DDX39B, NFKBIL1, LST1, NCR3	rs17200698-T	0.0361809	1E-11	(EA, MHC class I polypeptide-related sequence A)	0.813	[0.58-1.04] unit increase	Affymetrix [509946]	N
606	chr6_mann_hap4	2827443	2827444	rs2395045	28031287	Sasayama D	2016-11-26	Hum Mol Genet	Genome-wide quantitative trait loci mapping of the human cerebrospinal fluid proteome.	Cerebrospinal fluid biomarker levels	133 Japanese ancestry individuals.	NA	6p21.33	NR	rs2395045-?	NR	6E-9	(MHC class I polypeptide-related sequence B)			Illumina [514227]	N
606	chr6_mann_hap4	2827609	2827610	rs3131631	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cervical cancer	6,563 European ancestry cases, 410,350 European ancestry controls	NA	6p21.33		rs3131631-G	NR	5E-10		1.1332	NR	Affymetrix [7846216] (imputed)	N
606	chr6_mann_hap4	2828021	2828022	rs2516491	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG16N22.5	rs2516491-C	NR	1E-8		0.0197328	[0.013-0.027] unit decrease	Affymetrix [323858] (imputed)	N
606	chr6_mann_hap4	2828274	2828275	rs3131630	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG16N22.5	rs3131630-G	NR	1E-9		0.0197999	[0.013-0.026] unit decrease	Affymetrix [319769] (imputed)	N
606	chr6_mann_hap4	2828274	2828275	rs3131630	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG16N22.5	rs3131630-G	NR	3E-9		0.019409	[0.013-0.026] unit decrease	Affymetrix [319769] (imputed)	N
606	chr6_mann_hap4	2829324	2829325	rs149066340	30111768	Yao C	2018-08-15	Nat Commun	Genome-wide mapping of plasma protein QTLs identifies putatively causal genes and pathways for cardiovascular disease.	Blood protein levels	6861 European ancestry individuals	4298 European ancestry individuals	6p21.33		rs149066340-C	0.979	1E-36	(C2)	0.92	unit increase	Affymetrix, Illumina [8509364] (imputed)	N
606	chr6_mann_hap4	2830378	2830379	rs34451538	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs34451538-G	0.971	6E-20				Affymetrix [10369434] (imputed)	N
606	chr6_mann_hap4	2830378	2830379	rs34451538	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.33	PPIAP9	rs34451538-A	0.028767	2E-9		0.044486254	[0.03-0.059] unit decrease	Affymetrix [93095623] (imputed)	N
606	chr6_mann_hap4	2830878	2830879	rs3132455	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large HDL	115,082 European ancestry individuals	NA	6p21.33		rs3132455-G	0.653225	3E-10		0.0260764	[0.018-0.034] unit increase	NR [11722792] (imputed)	N
606	chr6_mann_hap4	2832571	2832572	rs3132454	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PPIAP9	rs3132454-G	NR	2E-8		0.0168062	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_mann_hap4	2832571	2832572	rs3132454	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PPIAP9	rs3132454-G	NR	4E-12		0.0205728	[0.015-0.026] unit decrease	Affymetrix [321016] (imputed)	N
606	chr6_mann_hap4	2832571	2832572	rs3132454	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	PPIAP9	rs3132454-G	NR	2E-8		0.0183183	[0.012-0.025] unit decrease	Affymetrix [323123] (imputed)	N
606	chr6_mann_hap4	2834060	2834061	rs3093992	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	PPIAP9	rs3093992-C	NR	3E-8		0.0191109	[0.012-0.026] unit increase	Affymetrix [323123] (imputed)	N
606	chr6_mann_hap4	2834944	2834945	rs114060326	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)(bidirectional)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.33		rs114060326-G	NR	3E-10				Affymetrix [7846216] (imputed)	N
606	chr6_mann_hap4	2835381	2835382	rs3093988	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	RPL15P4	rs3093988-A	NR	8E-12		0.0266126	[0.019-0.034] unit increase	Affymetrix [323123] (imputed)	N
606	chr6_mann_hap4	2835381	2835382	rs3093988	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	316,772 European ancestry male individuals	NA	6p21.33	NR	rs3093988-A	0.1856	8E-20		0.0203	[0.016-0.025] unit decrease	NR [~ 27400000] (imputed)	N
606	chr6_mann_hap4	2838538	2838539	rs2734580	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	RPL15P4	rs2734580-T	NR	8E-16		0.0360498	[0.027-0.045] unit decrease	Affymetrix [323123] (imputed)	N
606	chr6_mann_hap4	2839484	2839485	rs2516482	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.33	MCCD1	rs2516482-G	0.195446	1E-15		0.038059197	[0.029-0.047] unit increase	Affymetrix [93095623] (imputed)	N
606	chr6_mann_hap4	2839840	2839841	rs3093983	33649182	Penova M	2021-03-01	Proc Natl Acad Sci U S A	Genome wide association study of HTLV-1-associated myelopathy/tropical spastic paraparesis in the Japanese population.	HTLV-1 associated myelopathy	731 Japanese ancestry cases, 846 Japanese ancestry controls	NA	6p21.33		rs3093983-G	0.08	4E-7		1.86	[1.47-2.37]	Illumina [126394]	N
606	chr6_mann_hap4	2842517	2842518	rs3853601	22197932	Paternoster L	2011-12-25	Nat Genet	Meta-analysis of genome-wide association studies identifies three new risk loci for atopic dermatitis.	Atopic dermatitis	5,606 European ancestry cases, 20,565 European ancestry controls	5,419 European ancestry cases, 19,833 European ancestry controls	6p21.33	BAT1	rs3853601-G	0.12	2E-6		1.13	[1.08-1.19]	Affymetrix, Illumina [~ 2500000] (imputed)	N
606	chr6_mann_hap4	2847107	2847108	rs114751021	33841421	Li J	2021-03-25	Front Immunol	Variants at the MHC Region Associate With Susceptibility to <i>Clostridioides difficile</i> Infection: A Genome-Wide Association Study Using Comprehensive Electronic Health Records.	Clostridioides difficle infection in antibiotics-users	587 European ancestry cases, 3,166 European ancestry controls	NA	6p21.33	SNORD117	rs114751021-G	0.024	5E-8		2.41	[1.84-3.09]	Illumina [64973696] (imputed)	N
606	chr6_mann_hap4	2848393	2848394	rs2734583	21912425	Tohkin M	2011-09-13	Pharmacogenomics J	A whole-genome association study of major determinants for allopurinol-related Stevens-Johnson syndrome and toxic epidermal necrolysis in Japanese patients.	Stevens-Johnson syndrome and toxic epidermal necrolysis (SJS-TEN)	14 Japanese ancestry cases, 991 Japanese ancestry controls	NA	6p21.33	PSORS1C1, PSORS1C3, BAT1, HLA-C, MICC, PPIAP9, POLR2LP, CCHCR1, TCF19, HLA-B*5801, HCP5, POU5F1	rs2734583-?	0.0055	2E-8		66.8	[19.8-225.0]	Illumina [890321]	N
606	chr6_mann_hap4	2848703	2848704	rs9267485	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	6p21.33	DDX39B	rs9267485-G	NR	2E-17		0.0531442	[0.041-0.065] unit decrease	Illumina [13520550] (imputed)	N
606	chr6_mann_hap4	2849604	2849605	rs2071596	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	6p21.33	DDX39B	rs2071596-A	0.163229	1E-42		0.04289182	[0.037-0.049] unit increase	Affymetrix [93095623] (imputed)	N
606	chr6_mann_hap4	2849604	2849605	rs2071596	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6p21.33	DDX39B	rs2071596-A	0.163228	9E-50		0.046432465	[0.04-0.053] unit increase	Affymetrix [93095623] (imputed)	N
606	chr6_mann_hap4	2849604	2849605	rs2071596	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6p21.33	DDX39B	rs2071596-A	0.163185	2E-27		0.03458288	[0.028-0.041] unit decrease	Affymetrix [93095623] (imputed)	N
606	chr6_mann_hap4	2849604	2849605	rs2071596	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6p21.33	DDX39B	rs2071596-A	0.163195	5E-24		0.030947343	[0.025-0.037] unit increase	Affymetrix [93095623] (imputed)	N
606	chr6_mann_hap4	2850849	2850850	rs2269476	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	6p21.33	DDX39B, ATP6V1G2-DDX39B	rs2269476-A	0.179	2E-24		0.04806173	[0.039-0.057] unit increase	Affymetrix [~ 2500000] (imputed)	N
606	chr6_mann_hap4	2853819	2853820	rs2844509	35023831	Chong M	2022-01-13	Elife	GWAS and ExWAS of blood Mitochondrial DNA copy number identifies 71 loci and highlights a potential causal role in dementia.	Mitochondrial DNA copy number	395,718 British, Irish, Other White, South Asian, African ancestry individuals	NA	6p21.33	NR	rs2844509-G	0.242812	3E-8		0.014	[0.0091-0.0189] unit increase	Affymetrix [23037915] (imputed)	N
606	chr6_mann_hap4	2856297	2856298	rs2239705	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	6p21.33	NR	rs2239705-?		8E-9	(MICA)			Illumina [NR]	N
606	chr6_mann_hap4	2857138	2857139	rs9267488	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p21.33	NR	rs9267488-?	NR	3E-6		4.68	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
606	chr6_mann_hap4	2857138	2857139	rs9267488	26291516	Miller FW	2015-08-20	Genes Immun	Genome-wide association study identifies HLA 8.1 ancestral haplotype alleles as major genetic risk factors for myositis phenotypes.	Myositis	1,710 European ancestry cases, 4,724 European ancestry controls	NA	6p21.33	ATP6V1G2, DDX39B	rs9267488-G	NR	6E-49		2.32	[NR]	Illumina [NR] (imputed)	N
606	chr6_mann_hap4	2857339	2857340	rs34568880	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	6p21.33	ATP6V1G2	rs34568880-C	0.986687	6E-10		0.0562557	[0.038-0.074] unit decrease	Affymetrix [NR] (imputed)	N
606	chr6_mann_hap4	2858653	2858654	rs2239708	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	6p21.33	ATP6V1G2, NFKBIL1	rs2239708-T	0.033249	2E-12		0.04410994	[0.032-0.056] unit increase	Affymetrix [93095623] (imputed)	N
606	chr6_mann_hap4	2858689	2858690	rs2071591	26562150	Seldin MF	2015-10-10	Mol Med	Genome-wide Association Study of Late-Onset Myasthenia Gravis: Confirmation of TNFRSF11A, and Identification of ZBTB10 and Three Distinct HLA Associations.	Late-onset myasthenia gravis	532 European ancestry cases, 2,128 European ancestry controls	NA	6p21.33	MHC_Class III	rs2071591-?	NR	4E-12				Illumina [6175472] (imputed)	N
606	chr6_mann_hap4	2860793	2860794	rs2523501	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (multivariate analysis)	477,968 European ancestry individuals	NA	6p21.33	NFKBIL1	rs2523501-C	0.152	8E-10		0.036	[0.024-0.048] unit decrease	NR [NR] (imputed)	N
606	chr6_mann_hap4	2862543	2862544	rs2516383	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	NFKBIL1	rs2516383-C	NR	3E-9		0.0206882	[0.014-0.027] unit increase	Affymetrix [323123] (imputed)	N
606	chr6_mann_hap4	2863316	2863317	rs6916921	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	LST1, NCR3, ATP6V1G2, TNF, NFKBIL1, LTA, LTB	rs6916921-T	0.1330321	2E-23	(Natural cytotoxicity triggering receptor 3)	0.6188	[0.5-0.74] unit decrease	Affymetrix [509946]	N
606	chr6_mann_hap4	2863548	2863549	rs34492353	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.33	NR	rs34492353-?	NR	1E-13				Affymetrix [~ 8270000] (imputed)	N
606	chr6_mann_hap4	2863548	2863549	rs34492353	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.33	NR	rs34492353-?	NR	6E-12				Affymetrix [~ 8270000] (imputed)	N
606	chr6_mann_hap4	2864486	2864487	rs34268928	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	6p21.33	NFKBIL1	rs34268928-T	0.02077	2E-9		0.04651516	[0.031-0.062] unit decrease	Affymetrix [93095623] (imputed)	N
606	chr6_mann_hap4	2865559	2865560	rs6929796	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	6p21.33	NFKBIL1	rs6929796-A	0.172	3E-8		0.0092	[0.0059-0.0125] unit decrease	Affymetrix, Illumina [33811881] (imputed)	N
606	chr6_mann_hap4	2865559	2865560	rs6929796	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	6p21.33	NFKBIL1	rs6929796-A	0.163327	3E-33		0.036523763	[0.031-0.042] unit increase	Affymetrix [93095623] (imputed)	N
606	chr6_mann_hap4	2865559	2865560	rs6929796	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6p21.33	NFKBIL1	rs6929796-A	0.163358	2E-18		0.030205907	[0.023-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
606	chr6_mann_hap4	2865559	2865560	rs6929796	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	6p21.33	NFKBIL1	rs6929796-A	0.1634	8E-16		0.03895272	[0.029-0.048] unit increase	Affymetrix [~ 2500000] (imputed)	N
606	chr6_mann_hap4	2865559	2865560	rs6929796	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	6p21.33	NFKBIL1	rs6929796-A	0.1635	5E-17		0.04056459	[0.031-0.05] unit increase	Affymetrix [~ 2500000] (imputed)	N
606	chr6_mann_hap4	2865559	2865560	rs6929796	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	6p21.33	NFKBIL1	rs6929796-A	0.1635	7E-11		0.03154443	[0.022-0.041] unit increase	Affymetrix [~ 2500000] (imputed)	N
606	chr6_mann_hap4	2865559	2865560	rs6929796	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	6p21.33	NFKBIL1	rs6929796-A	0.1635	7E-12		0.03316401	[0.024-0.043] unit increase	Affymetrix [~ 2500000] (imputed)	N
606	chr6_mann_hap4	2866560	2866561	rs35597084	32592749	Butler-Laporte G	2020-06-24	Clin Microbiol Infect	Elevated body-mass index is associated with an increased risk of infectious disease admissions and mortality: a mendelian randomization study.	Sepsis (90-day mortality)	341 European ancestry cases, 1,696 European ancestry controls	NA	6p21.33	NFKBIL1	rs35597084-C	0.96	4E-8		0.17	[0.11-0.23] unit decrease	NR [NR]	N
606	chr6_mann_hap4	2867741	2867742	rs2857605	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	6p21.33	NFKBIL1	rs2857605-C	0.21061104132454	6E-14		0.0672	[0.05-0.085] unit decrease	NR [5035015] (imputed)	N
606	chr6_mann_hap4	2868337	2868338	rs2230365	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.33		rs2230365-C	0.859	7E-16				Affymetrix [10369434] (imputed)	N
606	chr6_mann_hap4	2868337	2868338	rs2230365	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	NFKBIL1	rs2230365-T	NR	1E-12		0.0288606	[0.021-0.037] unit decrease	Affymetrix [321016] (imputed)	N
606	chr6_mann_hap4	2868337	2868338	rs2230365	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	NFKBIL1	rs2230365-T	NR	1E-11		0.0299572	[0.021-0.039] unit decrease	Affymetrix [323123] (imputed)	N
606	chr6_mann_hap4	2868337	2868338	rs2230365	26414677	Day FR	2015-11-01	Nat Genet	Large-scale genomic analyses link reproductive aging to hypothalamic signaling, breast cancer susceptibility and BRCA1-mediated DNA repair.	Menopause (age at onset)	up to 69,626 European ancestry women	NA	6p21.33	MSH5, HLA	rs2230365-C	0.84	8E-10		0.17	[0.11-0.23] years decrease	Affymetrix, Illumina [~ 2600000] (imputed)	N
606	chr6_mann_hap4	2871019	2871020	rs4947324	33235445	Lee YJ	2020-11-17	Int J Chron Obstruct Pulmon Dis	A Genome-Wide Association Study in Early COPD: Identification of One Major Susceptibility Loci.	Early chronic obstructive pulmonary disease in never smokers	38 Korean ancestry cases, 1,778 Korean ancestry controls	NA	6p21.33	NFKBIL1	rs4947324-?	NR	8E-6	(PS matching analysis)	4.16	NR	Affymetrix [345072]	N
606	chr6_mann_hap4	2872223	2872224	rs2516392	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.33		rs2516392-G	0.6215470000000001	7E-47		1.0639546	[1.05-1.08]	Affymetrix, Illumina [9851866] (imputed)	N
606	chr6_mann_hap4	2873562	2873563	rs138885312	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs138885312-?		2E-8		1.8	[1.47-2.20]	Illumina [7645193] (imputed)	N
606	chr6_mann_hap4	2873699	2873700	rs28732143	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs28732143-A	0.041	1E-64	(MHC class I polypeptide-related sequence B, MICB.5102.55.3)	1.02	[0.9-1.14] unit increase	Affymetrix [10572788] (imputed)	N
606	chr6_mann_hap4	2875409	2875410	rs111584145	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	6p21.33		rs111584145-G	0.615516	1E-9		0.01450694	[0.0098-0.0192] unit increase	Affymetrix [93095623] (imputed)	N
606	chr6_mann_hap4	2875409	2875410	rs111584145	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6p21.33		rs111584145-G	0.615476	1E-15		0.022145554	[0.017-0.028] unit increase	Affymetrix [93095623] (imputed)	N
606	chr6_mann_hap4	2875703	2875704	rs2857709	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	NFKBIL1	rs2857709-A	NR	5E-10		0.0243153	[0.017-0.032] unit decrease	Affymetrix [319769] (imputed)	N
606	chr6_mann_hap4	2875703	2875704	rs2857709	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	NFKBIL1	rs2857709-A	NR	1E-9		0.0236953	[0.016-0.031] unit decrease	Affymetrix [319769] (imputed)	N
606	chr6_mann_hap4	2876267	2876268	rs2857602	33106546	Johnson TA	2020-10-26	J Hum Genet	Association of an IGHV3-66 gene variant with Kawasaki disease.	Kawasaki disease	1,276 East Asian ancestry cases, 5,086 East Asian ancestry controls	2,152 East Asian ancestry cases, 2,751 East Asian ancestry controls	6p21.33	LTA	rs2857602-A	NR	3E-15		0.78	[0.73-0.83]	Affymetrix, Illumina [6265045] (imputed)	N
606	chr6_mann_hap4	2876267	2876268	rs2857602	32805626	Yuan S	2020-08-14	EBioMedicine	Effects of tumour necrosis factor on cardiovascular disease and cancer: A two-sample Mendelian randomization study.	Tumor necrosis factor levels	30,912 European ancestry individuals	NA	6p21.33	LTA	rs2857602-G	0.38	3E-12		0.032	[0.02-0.044] unit increase	NR [NR]	N
606	chr6_mann_hap4	2878022	2878023	rs190775951	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs190775951-A	0.017	8E-16	(MHC class I polypeptide-related sequence B, MICB.5102.55.3)	0.86	[0.64-1.08] unit increase	Affymetrix [10572788] (imputed)	N
606	chr6_mann_hap4	2881160	2881161	rs3093539	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	6p21.33	ABHD16A, AIF1, APOM, ATP6V1G2, ATP6V1G2-DDX39B, BAG6, C2, C4A, C4B, C4B_2, C6orf25, C6orf47, C6orf48, CFB, CLIC1, CSNK2B, CYP21A1P, CYP21A2, DDAH2, DDX39B, DXO, EHMT2, GPANK1, HSPA1A, HSPA1B, HSPA1L, LOC102060414, LSM2, LST1, LTA, LTB, LY6G5B, LY6G5C, LY6G6C, LY6G6D, LY6G6E, LY6G6F, MCCD1, MICB, MIR1236, MIR4646, MIR6832, MSH5, MSH5-SAPCD1, NCR3, NELFE, NEU1, NFKBIL1, PRRC2A, SAPCD1, SKIV2L, SLC44A4, SNORA38, SNORD48, SNORD52, SNORD84, SNORD117, STK19, TNF, TNXA, TNXB, VARS, VWA7, ZBTB12	rs3093539-G	0.9841	1E-9		1.189845	[1.14-1.24]	Affymetrix [8274727] (imputed)	N
606	chr6_mann_hap4	2881379	2881381	rs736160	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	LTA	rs736160-A	NR	1E-13		0.0220518	[0.016-0.028] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_mann_hap4	2881379	2881381	rs736160	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	LTA	rs736160-A	NR	1E-12		0.0211835	[0.015-0.027] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_mann_hap4	2881379	2881381	rs736160	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	LTA	rs736160-A	NR	7E-14		0.0222905	[0.016-0.028] unit decrease	Affymetrix [321016] (imputed)	N
606	chr6_mann_hap4	2881379	2881381	rs736160	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	LTA	rs736160-A	NR	1E-21		0.0310209	[0.025-0.037] unit decrease	Affymetrix [323123] (imputed)	N
606	chr6_mann_hap4	2881379	2881381	rs736160	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	LTA	rs736160-A	NR	3E-11		0.0199683	[0.014-0.026] unit increase	Affymetrix [321169] (imputed)	N
606	chr6_mann_hap4	2882650	2882651	rs2844482	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	6p21.33	ABHD16A, AIF1, APOM, ATP6V1G2, ATP6V1G2-DDX39B, BAG6, C6orf25, C6orf47, CSNK2B, DDAH2, DDX39B, GPANK1, LST1, LTA, LTB, LY6G5B, LY6G5C, LY6G6C, LY6G6D, LY6G6E, LY6G6F, MCCD1, MICB, MIR4646, MIR6832, NCR3, NFKBIL1, PRRC2A, SNORA38, SNORD84, SNORD117, TNF	rs2844482-T	0.152664	1E-9		1.0639137	[1.04-1.08]	Affymetrix [8274727] (imputed)	N
606	chr6_mann_hap4	2882650	2882651	rs2844482	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Perceived unattractiveness to mosquitoes	16,576 European ancestry individuals	NA	6p21.33	intergenic	rs2844482-T	NR	8E-6		0.145906	[0.082-0.21] unit decrease	Illumina [7433384] (imputed)	N
606	chr6_mann_hap4	2882651	2882652	rs2071590	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	6p21.33	NR	rs2071590-A	0.363817	4E-9		0.042927716	[0.029-0.057] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
606	chr6_mann_hap4	2882651	2882652	rs2071590	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	6p21.33	Intergenic	rs2071590-A	0.378	1E-8		0.0133	[0.0088-0.0178] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
606	chr6_mann_hap4	2883024	2883025	rs2239704	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	6p21.33	LTA	rs2239704-A	0.385621	2E-12		0.01774556	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
606	chr6_mann_hap4	2883024	2883025	rs2239704	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	6p21.33	NR	rs2239704-A	0.384392	1E-14		0.0163675	[0.012-0.021] unit decrease	NR [NR]	N
606	chr6_mann_hap4	2883024	2883025	rs2239704	28806749	Leo PJ	2017-08-14	PLoS Genet	Defining the genetic susceptibility to cervical neoplasia-A genome-wide association study.	Cervical cancer	2,866 European ancestry cases, 6,481 European ancestry controls	NA	6p21.33	TNF	rs2239704-A	NR	6E-9		1.23	[NR]	Illumina [10863230] (imputed)	N
606	chr6_mann_hap4	2883439	2883440	rs2229094	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.33		rs2229094-T	0.746	4E-60				Affymetrix [10369434] (imputed)	N
606	chr6_mann_hap4	2883439	2883440	rs2229094	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	6p21.33		rs2229094-T	0.746	9E-34				Affymetrix [10369434] (imputed)	N
606	chr6_mann_hap4	2883439	2883440	rs2229094	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.33		rs2229094-T	0.746	3E-36				Affymetrix [10369434] (imputed)	N
606	chr6_mann_hap4	2883439	2883440	rs2229094	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	6p21.33		rs2229094-T	0.746	2E-47				Affymetrix [10369434] (imputed)	N
606	chr6_mann_hap4	2883439	2883440	rs2229094	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs2229094-T	0.746	6E-107				Affymetrix [10369434] (imputed)	N
606	chr6_mann_hap4	2883439	2883440	rs2229094	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p21.33		rs2229094-T	0.746	4E-37				Affymetrix [10369434] (imputed)	N
606	chr6_mann_hap4	2883439	2883440	rs2229094	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	6p21.33	LTA	rs2229094-C	0.254265	6E-29		0.029798461	[0.025-0.035] unit increase	Affymetrix [93095623] (imputed)	N
606	chr6_mann_hap4	2883439	2883440	rs2229094	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.33	LTA	rs2229094-C	0.254251	7E-45		0.040826518	[0.035-0.047] unit increase	Affymetrix [93095623] (imputed)	N
606	chr6_mann_hap4	2883439	2883440	rs2229094	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.33	NR	rs2229094-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
606	chr6_mann_hap4	2883439	2883440	rs2229094	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	White blood cell count	8,825 African American individuals, 18,251 Hispanic/Latino individuals, 543 Asian ancestry individuals, 606 Native American ancestry individuals, 383 individuals	NA	6p21.33	NR	rs2229094-?	NR	4E-6		0.01256537	[0.0072-0.0179] unit increase	Illumina [30613845] (imputed)	N
606	chr6_mann_hap4	2883439	2883440	rs2229094	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	6p21.33	LTA	rs2229094-C	0.2537	8E-43		0.0564668	[0.048-0.065] unit increase	Affymetrix [~ 2500000] (imputed)	N
606	chr6_mann_hap4	2883439	2883440	rs2229094	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	6p21.33	LTA	rs2229094-C	0.2536	4E-15		0.03213321	[0.024-0.04] unit increase	Affymetrix [~ 2500000] (imputed)	N
606	chr6_mann_hap4	2883439	2883440	rs2229094	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	6p21.33	LTA	rs2229094-C	0.2535	6E-72		0.07418746	[0.066-0.082] unit increase	Affymetrix [~ 2500000] (imputed)	N
607	chr6_mann_hap4	2883640	2883641	rs2229092	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	LTA	rs2229092-C	NR	5E-9		0.0338477	[0.022-0.045] unit decrease	Affymetrix [321016] (imputed)	N
607	chr6_mann_hap4	2883640	2883641	rs2229092	32641083	Hillary RF	2020-07-08	Genome Med	Multi-method genome- and epigenome-wide studies of inflammatory protein levels in healthy older adults.	Tumor necrosis factor beta levels	982 Scottish ancestry individuals	NA	6p21.33	NR	rs2229092-C	0.05477	5E-31		1.15038	[0.96-1.35] unit decrease	Illumina [7903493] (imputed)	N
607	chr6_mann_hap4	2883840	2883841	rs4647195	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.33	NR	rs4647195-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
607	chr6_mann_hap4	2885191	2885192	rs1799964	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	89,266 East Asian ancestry individuals	NA	6p21.33	NR	rs1799964-T	0.827369	7E-15		0.048854	[0.037-0.061] SD units decrease	Affymetrix, Illumina [16289068] (imputed)	N
607	chr6_mann_hap4	2885191	2885192	rs1799964	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.33	NR	rs1799964-?	NR	1E-11				Affymetrix [~ 8270000] (imputed)	N
607	chr6_mann_hap4	2885191	2885192	rs1799964	21102463	Franke A	2010-11-21	Nat Genet	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry trios	6p21.33	HLA-DQA2, LTA, TNF, LST1, LTB	rs1799964-C	0.209	4E-11		1.19	[1.13-1.25]	Affymetrix, Illumina [953241] (imputed)	N
607	chr6_mann_hap4	2885914	2885915	rs1800629	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	TNF	rs1800629-A	NR	3E-12		0.0274188	[0.02-0.035] unit decrease	Affymetrix [323858] (imputed)	N
607	chr6_mann_hap4	2885914	2885915	rs1800629	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	6p21.33	TNF	rs1800629-A	0.166	8E-19		0.2902	[0.23-0.35] mmHg increase	Affymetrix [NR] (imputed)	N
607	chr6_mann_hap4	2886710	2886711	rs1800610	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NCR3	5,364 Icelandic ancestry individuals	NA	6p21.33		rs1800610-A	0.05852	5E-49		0.548141	[0.48-0.62] unit decrease	Illumina [7506463] (imputed)	N
607	chr6_mann_hap4	2887072	2887073	rs3093662	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	6p21.33	NR	rs3093662-A	0.92	2E-10		0.0223	[0.015-0.029] unit increase	NR [NR]	N
607	chr6_mann_hap4	2887525	2887526	rs3093664	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MICB	5,339 Icelandic ancestry individuals	NA	6p21.33		rs3093664-G	0.08964	1E-117		0.671593	[0.61-0.73] unit increase	Illumina [7506463] (imputed)	N
607	chr6_mann_hap4	2887525	2887526	rs3093664	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p21.33	TNF	rs3093664-G	0.048	3E-7		0.13	[0.081-0.179] unit increase	Affymetrix, Illumina [7374092] (imputed)	N
607	chr6_mann_hap4	2887525	2887526	rs3093664	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs3093664-A	0.916875	8E-64	(MICB, 9328_55_3)	0.73897094	[0.66-0.82] unit decrease	Illumina [> 1000000] (imputed)	N
607	chr6_mann_hap4	2887525	2887526	rs3093664	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs3093664-A	0.916875	8E-11	(C4A C4B, 2182_54_1)	0.29393905	[0.21-0.38] unit increase	Illumina [> 1000000] (imputed)	N
607	chr6_mann_hap4	2887525	2887526	rs3093664	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs3093664-A	0.916875	3E-14	(IL36A, 14150_7_3)	0.34182286	[0.25-0.43] unit increase	Illumina [> 1000000] (imputed)	N
607	chr6_mann_hap4	2887525	2887526	rs3093664	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs3093664-A	0.916875	1E-111	(MICB, 5102_55_3)	0.9721669	[0.89-1.05] unit decrease	Illumina [> 1000000] (imputed)	N
607	chr6_mann_hap4	2887525	2887526	rs3093664	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs3093664-A	0.916875	1E-10	(USP25, 9215_117_3)	0.28181827	[0.2-0.37] unit decrease	Illumina [> 1000000] (imputed)	N
607	chr6_mann_hap4	2889733	2889734	rs1800628	27749845	Lesseur C	2016-10-17	Nat Genet	Genome-wide association analyses identify new susceptibility loci for oral cavity and pharyngeal cancer.	Oral cavity cancer	2,717 European ancestry cases, 273 cases, 5,984 European ancestry controls, 601 controls	NA	6p21.33	MICB, AIF1	rs1800628-A	0.07	7E-8		1.3962	NR	Illumina [7574753] (imputed)	N
607	chr6_mann_hap4	2890397	2890398	rs769178	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs769178-G	0.94078125	8E-31	(NCR3, 3003_29_2)	0.5867702	[0.49-0.69] unit increase	Illumina [> 1000000] (imputed)	N
607	chr6_mann_hap4	2890397	2890398	rs769178	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs769178-G	0.94078125	4E-26	(ISG15, 14148_2_3)	0.54343	[0.44-0.64] unit increase	Illumina [> 1000000] (imputed)	N
607	chr6_mann_hap4	2890397	2890398	rs769178	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs769178-G	0.94078125	3E-10	(TNXB, 5698_60_3)	0.32249722	[0.22-0.42] unit increase	Illumina [> 1000000] (imputed)	N
607	chr6_mann_hap4	2890397	2890398	rs769178	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs769178-G	0.94078125	1E-40	(MICA, 2730_58_2)	0.67921454	[0.58-0.78] unit increase	Illumina [> 1000000] (imputed)	N
607	chr6_mann_hap4	2890397	2890398	rs769178	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs769178-G	0.94078125	1E-33	(C2, 3186_2_2)	0.63008285	[0.53-0.73] unit increase	Illumina [> 1000000] (imputed)	N
607	chr6_mann_hap4	2890494	2890495	rs769177	30226566	Yamada Y	2018-09-04	Int J Mol Med	Identification of 13 novel susceptibility loci for early-onset myocardial infarction, hypertension, or chronic kidney disease.	Hypertension	3,444 Japanese ancestry cases, 4,636 Japanese ancestry controls	NA	6p21.33	Intergenic	rs769177-G	0.8280000000000001	1E-6		1.2345679		Illumina [31276]	N
607	chr6_mann_hap4	2895733	2895734	rs7758790	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.33		rs7758790-T	0.774	1E-27				Affymetrix [10369434] (imputed)	N
607	chr6_mann_hap4	2898013	2898014	rs2256965	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6p21.33		rs2256965-A	0.4188	2E-13		0.0106	[0.0079-0.0133] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
607	chr6_mann_hap4	2898275	2898276	rs2256974	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.33	NR	rs2256974-A	0.375	2E-25		0.842	[0.81-0.88]	Illumina [11270530] (imputed)	N
607	chr6_mann_hap4	2898275	2898276	rs2256974	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Tumor necrosis factor receptor 2 levels	21,758 European ancestry individuals	9,173 individuals	6p21.33		rs2256974-A	0.18	3E-10		0.0632	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
607	chr6_mann_hap4	2898275	2898276	rs2256974	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p21.33	LST1	rs2256974-A	0.173581	3E-16		0.026160087	[0.02-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
607	chr6_mann_hap4	2898275	2898276	rs2256974	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	6p21.33	LST1	rs2256974-A	0.17355	5E-37		0.039224777	[0.033-0.045] unit increase	Affymetrix [93095623] (imputed)	N
607	chr6_mann_hap4	2898363	2898364	rs200801362	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	6p21.33	LST1	rs200801362-T	0.839907	4E-13		0.0188461	[0.014-0.024] unit decrease	Affymetrix [12370749]	N
607	chr6_mann_hap4	2899040	2899040	rs28986170	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FEV1/FVC)	48,943 European ancestry individuals	57,176 European ancestry individuals, 38,199 individuals.	6p21.33	LST1	rs28986170-?	0.752	2E-10	(conditioned on rs2070600, rs9272528)	0.063	[0.043-0.083] unit increase	Affymetrix [27624732] (imputed)	N
607	chr6_mann_hap4	2899464	2899465	rs1052248	33768542	Liu Y	2021-03-26	Clin Pharmacol Ther	Class II HLA Variants Associate with Risk of Pegaspargase Hypersensitivity.	Asparaginase hypersensitivity in acute lymphoblastic leukemia	798 Native American individuals	NA	6p21.33	NR	rs1052248-A	NR	4E-7		2.31	[NR]	Illumina [NR] (imputed)	N
607	chr6_mann_hap4	2899464	2899465	rs1052248	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	6p21.33	Intergenic	rs1052248-A	0.2609	2E-8	(MTAG)	0.0146	[0.0095-0.0197] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
607	chr6_mann_hap4	2899464	2899465	rs1052248	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p21.33	LST1	rs1052248-A	0.28	3E-17		1.05	[1.04-1.06]	Illumina [at least 560000] (imputed)	N
607	chr6_mann_hap4	2899592	2899593	rs986475	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NCR3	rs986475-G	0.071	1E-31	(Natural cytotoxicity triggering receptor 3, NCR3.3003.29.2)	0.55	[0.45-0.65] unit decrease	Affymetrix [10572788] (imputed)	N
607	chr6_mann_hap4	2900374	2900375	rs11575841	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	6p21.33	NR	rs11575841-?	NR	5E-20		9.163	NR z score decrease	Illumina [at least 830937] (imputed)	N
607	chr6_mann_hap4	2900674	2900675	rs11575839	23028341	Yang X	2012-09-13	PLoS Genet	Genome-wide association study for serum complement C3 and C4 levels in healthy Chinese subjects.	Complement C3 and C4 levels	1,999 Han Chinese ancestry male individuals	1,496 Han Chinese ancestry male individuals	6p21.33	HLA-C	rs11575839-A	0.05	1E-54	(Serum level of C4)	0.23	[0.21-0.25] g/L decrease	Illumina [1940245] (imputed)	N
607	chr6_mann_hap4	2901058	2901059	rs148533164	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.33		rs148533164-G	0.952	3E-15				Affymetrix [10369434] (imputed)	N
607	chr6_mann_hap4	2901147	2901148	rs28732145	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p21.33	NR	rs28732145-?	NR	2E-11		0.2045	[0.15-0.26] unit increase	Illumina [at least 560000] (imputed)	N
607	chr6_mann_hap4	2903553	2903554	rs11575837	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6p21.33		rs11575837-?	NR	5E-8		1.20533	[1.14-1.27]	NR [685523]	N
607	chr6_mann_hap4	2903553	2903554	rs11575837	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.33	NR	rs11575837-T	0.012	8E-13		0.58141	[0.42-0.74] unit increase	Affymetrix [up to 8900000] (imputed)	N
607	chr6_mann_hap4	2904230	2904231	rs28732146	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	NCR3	rs28732146-A	NR	1E-11		0.0239586	[0.017-0.031] unit decrease	Affymetrix [321016] (imputed)	N
607	chr6_mann_hap4	2904230	2904231	rs28732146	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	NCR3	rs28732146-A	NR	2E-17		0.0326707	[0.025-0.04] unit decrease	Affymetrix [323123] (imputed)	N
607	chr6_mann_hap4	2904392	2904393	rs9357135	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	6p21.33		rs9357135-T	0.046397421	1E-19		0.60996497	[0.48-0.74] unit increase	Illumina [13429980] (imputed)	N
607	chr6_mann_hap4	2905027	2905028	rs2857599	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	NCR3	rs2857599-A	NR	1E-19		0.0348769	[0.027-0.042] unit decrease	Affymetrix [321016] (imputed)	N
607	chr6_mann_hap4	2905027	2905028	rs2857599	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	6p21.33	Intergenic	rs2857599-G	NR	3E-8		0.0262207	[0.017-0.036] unit increase	Illumina [13519193] (imputed)	N
607	chr6_mann_hap4	2905042	2905043	rs536378929	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	6p21.33	NCR3	rs536378929-T	0.9236	9E-26		0.0494	[0.04-0.059] unit decrease	Affymetrix [18391927] (imputed)	N
607	chr6_mann_hap4	2905492	2905493	rs2515920	30226566	Yamada Y	2018-09-04	Int J Mol Med	Identification of 13 novel susceptibility loci for early-onset myocardial infarction, hypertension, or chronic kidney disease.	Hypertension	3,444 Japanese ancestry cases, 4,636 Japanese ancestry controls	NA	6p21.33	NCR3	rs2515920-T	0.827	5E-7		1.2345679		Illumina [31276]	N
607	chr6_mann_hap4	2905641	2905642	rs3130632	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	NCR3	rs3130632-T	NR	1E-10		0.022096	[0.015-0.029] unit decrease	Affymetrix [319769] (imputed)	N
607	chr6_mann_hap4	2905641	2905642	rs3130632	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	NCR3	rs3130632-T	NR	9E-10		0.0210507	[0.014-0.028] unit decrease	Affymetrix [319769] (imputed)	N
607	chr6_mann_hap4	2905641	2905642	rs3130632	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	NCR3	rs3130632-T	NR	7E-11		0.0226077	[0.016-0.029] unit decrease	Affymetrix [321169] (imputed)	N
607	chr6_mann_hap4	2905644	2905645	rs34744948	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.33	NR	rs34744948-?	NR	4E-11				Affymetrix [~ 8270000] (imputed)	N
607	chr6_mann_hap4	2906105	2906106	rs2857598	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	NCR3	rs2857598-A	NR	4E-15		0.0338966	[0.025-0.042] unit increase	Affymetrix [323123] (imputed)	N
607	chr6_mann_hap4	2906105	2906106	rs2857598	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.33	Intergenic	rs2857598-C	NR	7E-8	(women)	0.0362414	[0.023-0.049] unit decrease	Illumina [13520550] (imputed)	N
607	chr6_mann_hap4	2906105	2906106	rs2857598	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.33	Intergenic	rs2857598-C	NR	5E-11		0.0308295	[0.022-0.04] unit decrease	Illumina [13520550] (imputed)	N
607	chr6_mann_hap4	2906105	2906106	rs2857598	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	6p21.33	Intergenic	rs2857598-C	NR	9E-20		0.0496215	[0.039-0.06] unit decrease	Illumina [13520550] (imputed)	N
607	chr6_mann_hap4	2906117	2906118	rs3132452	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	6p21.33	NR	rs3132452-?	NR	2E-7		0.095	[0.059-0.131] unit increase	Illumina [at least 560000] (imputed)	N
607	chr6_mann_hap4	2907044	2907045	rs2515919	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	NCR3	rs2515919-G	NR	5E-12		0.020055	[0.014-0.026] unit increase	Affymetrix [319769] (imputed)	N
607	chr6_mann_hap4	2907044	2907045	rs2515919	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	NCR3	rs2515919-G	NR	2E-8		0.0182636	[0.012-0.025] unit increase	Affymetrix [323858] (imputed)	N
607	chr6_mann_hap4	2907044	2907045	rs2515919	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	NCR3	rs2515919-G	NR	7E-11		0.0189369	[0.013-0.025] unit increase	Affymetrix [319769] (imputed)	N
607	chr6_mann_hap4	2907044	2907045	rs2515919	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	NCR3	rs2515919-G	NR	2E-10		0.0184288	[0.013-0.024] unit decrease	Affymetrix [321016] (imputed)	N
607	chr6_mann_hap4	2907044	2907045	rs2515919	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	NCR3	rs2515919-G	NR	1E-28		0.0351117	[0.029-0.041] unit decrease	Affymetrix [323123] (imputed)	N
607	chr6_mann_hap4	2907044	2907045	rs2515919	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	NCR3	rs2515919-G	NR	8E-13		0.0210432	[0.015-0.027] unit increase	Affymetrix [321169] (imputed)	N
607	chr6_mann_hap4	2907044	2907045	rs2515919	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	6p21.33	Intergenic	rs2515919-A	0.6258	1E-10	(MTAG)	0.0119	[0.0082-0.0156] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
607	chr6_mann_hap4	2907044	2907045	rs2515919	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	6p21.33	Intergenic	rs2515919-A	0.6255	3E-16	(MTAG)	0.0139	[0.011-0.017] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
607	chr6_mann_hap4	2907044	2907045	rs2515919	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6p21.33	Intergenic	rs2515919-A	0.63	3E-16	(MTAG)	0.0111	[0.0084-0.0138] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
607	chr6_mann_hap4	2907698	2907699	rs2844480	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p21.33	NR	rs2844480-?	NR	2E-18		0.0887	[0.069-0.108] unit increase	Illumina [at least 560000] (imputed)	N
607	chr6_mann_hap4	2908187	2908188	rs150379130	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	NCR3	rs150379130-T	NR	4E-9		0.0270941	[0.018-0.036] unit decrease	Affymetrix [323123] (imputed)	N
607	chr6_mann_hap4	2908414	2908415	rs111728624	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	NCR3	rs111728624-C	NR	3E-11		0.0281508	[0.02-0.036] unit increase	Affymetrix [319769] (imputed)	N
607	chr6_mann_hap4	2908414	2908415	rs111728624	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.33	NCR3	rs111728624-C	NR	2E-8		0.0241088	[0.016-0.032] unit increase	Affymetrix [321114] (imputed)	N
607	chr6_mann_hap4	2908414	2908415	rs111728624	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	NCR3	rs111728624-C	NR	1E-11		0.0289838	[0.021-0.037] unit increase	Affymetrix [321169] (imputed)	N
607	chr6_mann_hap4	2909045	2909046	rs3130631	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p21.33	NR	rs3130631-?	NR	2E-9		0.0861	[0.058-0.115] unit decrease	Illumina [at least 560000] (imputed)	N
607	chr6_mann_hap4	2909717	2909718	rs17200816	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	NCR3	rs17200816-T	NR	2E-11		0.0283425	[0.02-0.037] unit increase	Affymetrix [319769] (imputed)	N
607	chr6_mann_hap4	2910299	2910300	rs2857596	32752121	Nedoszytko B	2020-07-31	Int J Mol Sci	Results from a Genome-Wide Association Study (GWAS) in Mastocytosis Reveal New Gene Polymorphisms Associated with WHO Subgroups.	Systemic mastocytosis	93 European ancestry cases, 5,606 European ancestry controls	NA	6p21.33	NRC3	rs2857596-C	0.2394	2E-10		2.582	[2.28-2.88]	Illumina [281811]	N
607	chr6_mann_hap4	2911346	2911347	rs2857595	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	NCR3	rs2857595-A	NR	3E-11		0.0254138	[0.018-0.033] unit decrease	Affymetrix [127266] (imputed)	N
607	chr6_mann_hap4	2911346	2911347	rs2857595	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FEV1/FVC)	48,943 European ancestry individuals	57,176 European ancestry individuals, 38,199 individuals.	6p21.33	NCR3	rs2857595-A	0.213	4E-9		0.048	[0.032-0.064] unit decrease	Affymetrix [27624732] (imputed)	N
607	chr6_mann_hap4	2911346	2911347	rs2857595	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FEV1)	48,943 European ancestry individuals.	57,176 European ancestry individuals, 38,199 individuals.	6p21.33	NCR3	rs2857595-A	0.21	2E-6		0.039	[0.023-0.055] unit decrease	Affymetrix [up to 27624732] (imputed)	N
607	chr6_mann_hap4	2911346	2911347	rs2857595	25936594	Tomer Y	2015-04-27	J Autoimmun	Genome wide identification of new genes and pathways in patients with both autoimmune thyroiditis and type 1 diabetes.	Type 1 diabetes and autoimmune thyroid diseases	346 European ancestry cases, 727 European ancestry controls	185 European ancestry cases, 340 European ancestry controls	6p21.33	NFKBIL1, LTA, NCR3	rs2857595-T	NR	2E-23		2.3765		Illumina [514008]	N
607	chr6_mann_hap4	2911346	2911347	rs2857595	25194280	Wei Q	2014-09-07	Nat Genet	Genome-wide association study identifies three susceptibility loci for laryngeal squamous cell carcinoma in the Chinese population.	Laryngeal squamous cell carcinoma	993 Chinese ancestry cases, 1,995 Chinese ancestry controls	2,398 Chinese ancestry cases, 2,804 Chinese ancestry controls	6p21.33	AIF1, HLA	rs2857595-?	0.50	2E-15		1.3	[1.22-1.39]	Affymetrix [662108]	N
607	chr6_mann_hap4	2911346	2911347	rs2857595	23284291	Hancock DB	2012-12-20	PLoS Genet	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (smoking interaction)	50,047 European ancestry individuals	NA	6p21.33	NCR3	rs2857595-?	NR	8E-8	(FEV1/FVC, Ever-smoking)			NR [~ 2500000] (imputed)	N
607	chr6_mann_hap4	2911346	2911347	rs2857595	21946350	Soler Artigas M	2011-09-25	Nat Genet	Genome-wide association and large-scale follow up identifies 16 new loci influencing lung function.	Pulmonary function	48,201 European ancestry individuals	46,411 European ancestry individuals	6p21.33	NCR3	rs2857595-G	0.81	2E-10	(FEV1/FVC)	0.037	[0.025-0.049] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
607	chr6_mann_hap4	2911346	2911347	rs2857595	21946350	Soler Artigas M	2011-09-25	Nat Genet	Genome-wide association and large-scale follow up identifies 16 new loci influencing lung function.	Pulmonary function	48,201 European ancestry individuals	46,411 European ancestry individuals	6p21.33	NCR3	rs2857595-G	0.81	1E-6	(FEV1)	0.025	[0.02-0.04] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
607	chr6_mann_hap4	2912397	2912398	rs17207190	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Strep throat	52,487 European ancestry cases, 22,017 European ancestry controls	NA	6p21.33	NR	rs17207190-?	NR	8E-8		0.0766	[0.049-0.105] unit decrease	Illumina [at least 560000] (imputed)	N
607	chr6_mann_hap4	2912581	2912582	rs2507960	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Diastolic blood pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	6p21.33	HLA	rs2507960-A	0.139916952	3E-6		0.1878	[0.11-0.27] unit increase	Affymetrix [~ 9800000] (imputed)	N
607	chr6_mann_hap4	2912778	2912779	rs9267516	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	6p21.33		rs9267516-T	0.364098	1E-16		0.0286201	[0.024-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
607	chr6_mann_hap4	2915209	2915210	rs2736186	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	Intergenic	rs2736186-A	0.03768844	1E-29	(EA, Neutrophil collagenase)	1.233	[1.03-1.44] unit increase	Affymetrix [509946]	N
607	chr6_mann_hap4	2915520	2915521	rs2857594	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	Triglyceride levels	291,107 British ancestry individuals	NA	6p21.33	TBC1D22B	rs2857594-C	0.148615	4E-11		0.01965	[0.014-0.025] unit decrease	Affymetrix [9463307] (imputed)	N
607	chr6_mann_hap4	2915520	2915521	rs2857594	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	Systolic blood pressure	291,107 British ancestry individuals	NA	6p21.33	TBC1D22B	rs2857594-C	0.148615	1E-7		0.36076	[0.23-0.49] unit decrease	Affymetrix [9463307] (imputed)	N
607	chr6_mann_hap4	2915540	2915541	rs41291790	35232999	Garcia-Etxebarria K	2022-03-01	Sci Rep	Local genetic variation of inflammatory bowel disease in Basque population and its effect in risk prediction.	Ulcerative colitis	208 European ancestry cases, 935 European ancestry controls	NA	6p21.33		rs41291790-A	0.022	3E-8		5.3		Illumina [5409651] (imputed)	N
607	chr6_mann_hap4	2915540	2915541	rs41291790	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	334,944 European ancestry, NR ancestry individuals	NA	6p21.33		rs41291790-?	NR	5E-8				Affymetrix [NR] (imputed)	N
607	chr6_mann_hap4	2915831	2915832	rs2844479	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	UQCRHP1	rs2844479-C	NR	4E-14		0.0227975	[0.017-0.029] unit increase	Affymetrix [319769] (imputed)	N
607	chr6_mann_hap4	2915831	2915832	rs2844479	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	UQCRHP1	rs2844479-C	NR	6E-13		0.02173	[0.016-0.028] unit increase	Affymetrix [319769] (imputed)	N
607	chr6_mann_hap4	2915831	2915832	rs2844479	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	UQCRHP1	rs2844479-C	NR	8E-11		0.0195735	[0.014-0.025] unit decrease	Affymetrix [321016] (imputed)	N
607	chr6_mann_hap4	2915831	2915832	rs2844479	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	UQCRHP1	rs2844479-C	NR	1E-14		0.0236304	[0.018-0.03] unit increase	Affymetrix [321169] (imputed)	N
607	chr6_mann_hap4	2915831	2915832	rs2844479	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	6p21.33		rs2844479-C	0.326375	4E-26		0.027727867	[0.023-0.033] unit increase	Affymetrix [93095623] (imputed)	N
607	chr6_mann_hap4	2915831	2915832	rs2844479	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	6p21.33	AIF1	rs2844479-A	0.66	3E-10		1.14	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
607	chr6_mann_hap4	2915831	2915832	rs2844479	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs2844479-C	0.393698650943396	4E-6	(IGP60)	0.151	[0.087-0.215] unit increase	Illumina [~ 2500000] (imputed)	N
607	chr6_mann_hap4	2915831	2915832	rs2844479	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs2844479-C	0.393631380483438	4E-6	(IGP6)	0.1506	[0.086-0.215] unit decrease	Illumina [~ 2500000] (imputed)	N
607	chr6_mann_hap4	2915831	2915832	rs2844479	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs2844479-C	0.393516127507802	9E-6	(IGP61)	0.1445	[0.081-0.208] unit increase	Illumina [~ 2500000] (imputed)	N
607	chr6_mann_hap4	2915831	2915832	rs2844479	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs2844479-C	0.393054780607685	7E-6	(IGP58)	0.1476	[0.083-0.212] unit increase	Illumina [~ 2500000] (imputed)	N
607	chr6_mann_hap4	2915831	2915832	rs2844479	19079260	Thorleifsson G	2008-12-14	Nat Genet	Genome-wide association yields new sequence variants at seven loci that associate with measures of obesity.	Weight	72,598 European ancestry individuals, 1,160 African American individuals	Up to 11,036 European ancestry individuals, 32,615 individuals	6p21.33	AIF1, NCR3	rs2844479-T	0.68	2E-8		3.58	[2.33-4.83] percentage SD increase	Illumina [305846]	N
607	chr6_mann_hap4	2915985	2915986	rs9267517	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	IgD on unswitched memory B cell	3,636 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs9267517-A	0.2447	1E-13		0.2671	[0.2-0.34] unit decrease	Illumina [18230756] (imputed)	N
607	chr6_mann_hap4	2916452	2916453	rs144360625	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	6p21.33		rs144360625-C	0.125812	9E-19		0.029980848	[0.023-0.037] unit increase	Affymetrix [93095623] (imputed)	N
607	chr6_mann_hap4	2916452	2916453	rs144360625	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	6p21.33	NR	rs144360625-?	NR	3E-11	(MIC-A)	0.57967	[0.41-0.75] unit decrease	Illumina [11901634] (imputed)	N
607	chr6_mann_hap4	2917032	2917032	rs144831544	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	UQCRHP1	rs144831544-AAATTAGC	NR	7E-14		0.026213	[0.019-0.033] unit increase	Affymetrix [319769] (imputed)	N
607	chr6_mann_hap4	2917032	2917032	rs144831544	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	UQCRHP1	rs144831544-AAATTAGC	NR	4E-13		0.0254281	[0.019-0.032] unit increase	Affymetrix [319769] (imputed)	N
607	chr6_mann_hap4	2917032	2917032	rs144831544	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	UQCRHP1	rs144831544-AAATTAGC	NR	9E-16		0.0284632	[0.022-0.035] unit increase	Affymetrix [321169] (imputed)	N
607	chr6_mann_hap4	2917411	2917412	rs28895016	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	6p21.33	NCR3, AIF1	rs28895016-C	0.91	9E-16		1.097	[1.07-1.12]	Affymetrix, Illumina [8307659] (imputed)	N
607	chr6_mann_hap4	2917785	2917786	rs28366149	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	UQCRHP1	rs28366149-A	NR	4E-9		0.0225023	[0.015-0.03] unit decrease	Affymetrix [323123] (imputed)	N
607	chr6_mann_hap4	2917959	2917960	rs28474889	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	6p21.33	UQCRHP1	rs28474889-T	0.200504	2E-19		0.025810601	[0.02-0.031] unit increase	Affymetrix [93095623] (imputed)	N
607	chr6_mann_hap4	2917959	2917960	rs28474889	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6p21.33	UQCRHP1	rs28474889-T	0.200511	2E-24		0.02926071	[0.024-0.035] unit increase	Affymetrix [93095623] (imputed)	N
607	chr6_mann_hap4	2917959	2917960	rs28474889	29773799	Horikoshi M	2018-05-17	Nat Commun	Elucidating the genetic architecture of reproductive ageing in the Japanese population.	Menopause (age at onset)	43,861 Japanese ancestry women	32,545 European ancestry women	6p21.33	MSH5 / HLA	rs28474889-C	0.73	5E-16	(japanese)	0.24	[0.18-0.3] year increase	Illumina [at least 532488] (imputed)	N
607	chr6_mann_hap4	2918162	2918163	rs9348876	22936669	Julia A	2012-08-30	Gut	A genome-wide association study on a southern European population identifies a new Crohn's disease susceptibility locus at RBX1-EP300.	Crohn's disease	1,277 European ancestry cases, 1,488 European ancestry controls	1,365 European ancestry cases, 1,396 European ancestry controls	6p21.33	AIF1	rs9348876-T	0.06	3E-6		1.41	[1.22-1.63]	Illumina [508934]	N
607	chr6_mann_hap4	2918511	2918512	rs28732148	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	6p21.33	AIF1	rs28732148-C	0.932302	2E-9		0.0218984	[0.015-0.029] unit decrease	NR [13737936] (imputed)	N
607	chr6_mann_hap4	2919985	2919986	rs3130060	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	UQCRHP1	rs3130060-T	NR	8E-10		0.0239184	[0.016-0.032] unit decrease	Affymetrix [323858] (imputed)	N
607	chr6_mann_hap4	2919985	2919986	rs3130060	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	UQCRHP1	rs3130060-T	NR	2E-8		0.0217476	[0.014-0.029] unit decrease	Affymetrix [127266] (imputed)	N
607	chr6_mann_hap4	2919985	2919986	rs3130060	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	UQCRHP1	rs3130060-T	NR	6E-9		0.0221795	[0.015-0.03] unit increase	Affymetrix [323123] (imputed)	N
607	chr6_mann_hap4	2920169	2920170	rs2857702	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	UQCRHP1	rs2857702-C	NR	7E-9		0.0219268	[0.015-0.029] unit decrease	Affymetrix [323123] (imputed)	N
607	chr6_mann_hap4	2929926	2929927	rs140054334	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.33	NR	rs140054334-T	0.017	7E-11		0.45969	[0.32-0.6] unit increase	Affymetrix [up to 8900000] (imputed)	N
607	chr6_mann_hap4	2929926	2929927	rs140054334	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.33	NR	rs140054334-T	0.017	3E-6	(men)	0.387194	[0.23-0.55] unit increase	Affymetrix [up to 8900000] (imputed)	N
607	chr6_mann_hap4	2930444	2930445	rs2736176	32109421	Li C	2020-02-20	Am J Hum Genet	Genome-Wide Association Analysis in Humans Links Nucleotide Metabolism to Leukocyte Telomere Length.	Leukocyte telomere length	78,592 European ancestry individuals	NA	6p21.33	PRRC2A	rs2736176-C	0.31	4E-10		0.035	[0.023-0.047] unit increase	Affymetrix, Illumina, Perlegen [up to 30071938] (imputed)	N
607	chr6_mann_hap4	2930753	2930754	rs2857694	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PRRC2A	rs2857694-T	NR	2E-9		0.0174435	[0.012-0.023] unit increase	Affymetrix [319769] (imputed)	N
607	chr6_mann_hap4	2930753	2930754	rs2857694	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	PRRC2A	rs2857694-T	NR	4E-8		0.0161057	[0.01-0.022] unit increase	Affymetrix [319769] (imputed)	N
607	chr6_mann_hap4	2930904	2930908	rs145554793	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	6p21.33	PRRC2A, SNORA38	rs145554793-C	0.364548	5E-15		0.020902038	[0.016-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
607	chr6_mann_hap4	2931267	2931268	rs2857693	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	PRRC2A	rs2857693-T	NR	2E-11		0.019953	[0.014-0.026] unit increase	Affymetrix [321169] (imputed)	N
607	chr6_mann_hap4	2931267	2931268	rs2857693	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	6p21.33	BAT2	rs2857693-T	0.38	3E-29		0.034	[0.028-0.04] unit decrease	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
607	chr6_mann_hap4	2932144	2932145	rs3115665	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic glomerulonephritis	566 European ancestry cases, 475,255 European ancestry controls, 210 East Asian ancestry cases, 174,345 East Asian ancestry controls	NA	6p21.33		rs3115665-G	NR	3E-8		0.929	[0.6-1.26] unit increase	Affymetrix, Illumina [25844108] (imputed)	N
607	chr6_mann_hap4	2932556	2932557	rs2844472	33563987	Tyrrell J	2021-02-09	Nat Commun	Genetic predictors of participation in optional components of UK Biobank.	Acceptance of an invitation to participate in a mental health questionnaire	146,074 European ancestry cases, 148,713 European ancestry controls	NA	6p21.33	NR	rs2844472-A	0.65	2E-9		1.03	[1.02, 1.04]	Affymetrix [39302896] (imputed)	N
607	chr6_mann_hap4	2932615	2932616	rs2736173	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p21.33	BAT2	rs2736173-A	0.03	2E-7	(EA)	3.58	[2.14-5.98]	Illumina [up to 547389]	N
607	chr6_mann_hap4	2933778	2933779	rs2736172	24132900	Kanazawa T	2013-10-01	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of atypical psychosis.	Psychosis (atypical)	47 Japanese ancestry cases, 882 Japanese ancestry controls	NA	6p21.33	TNF, MICB	rs2736172-?		4E-6				Affymetrix [545513]	N
607	chr6_mann_hap4	2934801	2934802	rs2260051	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		6p21.33	PRRC2A	rs2260051-A	0.438452	2E-17		0.011743	[0.009-0.0144] unit decrease	Affymetrix [12370749]	N
607	chr6_mann_hap4	2934801	2934802	rs2260051	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	Waist circumference	291,107 British ancestry individuals	NA	6p21.33	PRRC2A	rs2260051-A	0.44273999	2E-13		0.230643	[0.17-0.29] unit decrease	Affymetrix [9463307] (imputed)	N
607	chr6_mann_hap4	2934801	2934802	rs2260051	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	6p21.33	NR	rs2260051-A	0.4422	8E-15		0.019329904	[0.014-0.024] unit decrease	Affymetrix [10549349] (imputed)	N
607	chr6_mann_hap4	2934801	2934802	rs2260051	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	6p21.33	PRRC2A	rs2260051-A	0.4425	1E-15		0.002	[0.0014-0.0026] unit increase	Affymetrix [15275733] (imputed)	N
607	chr6_mann_hap4	2934801	2934802	rs2260051	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	223,215 British ancestry individuals	111,610 British ancestry individuals	6p21.33	PRRC2A	rs2260051-T	0.56	7E-12		0.002	[0.0014-0.0026] unit decrease	Affymetrix [15275733] (imputed)	N
607	chr6_mann_hap4	2935703	2935704	rs3135044	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	6p21.33	NR	rs3135044-?		9E-11		0.0145909	[0.01-0.019] unit decrease	Affymetrix [19400418] (imputed)	N
607	chr6_mann_hap4	2938370	2938371	rs2736171	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PRRC2A	rs2736171-G	NR	3E-9		0.0173452	[0.012-0.023] unit decrease	Affymetrix [321016] (imputed)	N
607	chr6_mann_hap4	2938765	2938766	rs1046080	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Sex hormone-binding globulin levels	389,354 European ancestry individuals	NA	6p21.33		rs1046080-A	0.72	4E-8		0.013	nmol/L decrease	NR [NR] (imputed)	N
607	chr6_mann_hap4	2938765	2938766	rs1046080	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	6p21.33		rs1046080-A	0.72	2E-18				NR [NR] (imputed)	N
607	chr6_mann_hap4	2938765	2938766	rs1046080	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	6p21.33		rs1046080-A	0.72	4E-22		0.016	% increase	NR [NR] (imputed)	N
607	chr6_mann_hap4	2938765	2938766	rs1046080	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Aspartate aminotransferase levels	424,778 European ancestry individuals	NA	6p21.33		rs1046080-A	0.72	2E-7		0.011	U/L decrease	NR [NR] (imputed)	N
607	chr6_mann_hap4	2938765	2938766	rs1046080	32534018	Liu X	2020-06-10	Brain Behav Immun	Genetic factors underlying the bidirectional relationship between autoimmune and mental disorders - findings from a Danish population-based study.	Autoimmune traits	1,383 Danish ancestry cases, 62,656 Danish ancestry controls	NA	6p21.33	NR	rs1046080-C	0.26	2E-12		0.72	[0.65-0.79]	NR [7721839] (imputed)	N
607	chr6_mann_hap4	2938765	2938766	rs1046080	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	6p21.33	NR	rs1046080-?	NR	5E-8		0.12785	[0.082-0.174] unit increase	Affymetrix [7794483] (imputed)	N
607	chr6_mann_hap4	2938765	2938766	rs1046080	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	6p21.33	NR	rs1046080-?	NR	3E-6	(male)	0.13448	[0.078-0.191] unit increase	Affymetrix [7794483] (imputed)	N
607	chr6_mann_hap4	2938765	2938766	rs1046080	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite ratios	Up to 5,591 European ancestry individuals	Up to 1,767 European ancestry individuals	6p21.33	PRRC2A	rs1046080-A	0.74	1E-14	(X-11444/X-11470)	0.027	[0.019-0.035] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
607	chr6_mann_hap4	2939021	2939022	rs3132450	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PRRC2A	rs3132450-G	NR	7E-11		0.0268129	[0.019-0.035] unit decrease	Affymetrix [319769] (imputed)	N
607	chr6_mann_hap4	2939021	2939022	rs3132450	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	PRRC2A	rs3132450-G	NR	8E-12		0.0285009	[0.02-0.037] unit decrease	Affymetrix [321169] (imputed)	N
607	chr6_mann_hap4	2940583	2940584	rs3130623	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	6p21.33		rs3130623-T	NR	8E-24		0.0277	[0.022-0.033] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
607	chr6_mann_hap4	2940591	2940592	rs2736163	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein APOM	5,364 Icelandic ancestry individuals	NA	6p21.33		rs2736163-T	0.03403	2E-15		0.413547	[0.31-0.52] unit decrease	Illumina [7506463] (imputed)	N
607	chr6_mann_hap4	2940636	2940637	rs2242660	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cervical cancer	6,563 European ancestry cases, 410,350 European ancestry controls	NA	6p21.33		rs2242660-G	NR	2E-7		1.1015	NR	Affymetrix [7846216] (imputed)	N
607	chr6_mann_hap4	2944726	2944727	rs3115663	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.33	BAT2	rs3115663-G	0.1812	7E-57		3.04	[NR]	Illumina [242824]	N
607	chr6_mann_hap4	2945850	2945851	rs1046089	23894747	Aberg KA	2013-02-01	JAMA Psychiatry	A comprehensive family-based replication study of schizophrenia genes.	Schizophrenia	11,185 European ancestry cases, 10,768 European ancestry controls	1,262 African American ancestry individuals, 2,740 European ancestry individuals, 2,296 Asian ancestry individuals	6p21.33	PRRC2A, BAG6	rs1046089-G	0.34	4E-6	(EA)	1.3	[NR]	NR [1085772] (imputed)	N
607	chr6_mann_hap4	2945850	2945851	rs1046089	23307926	Perry JR	2013-01-09	Hum Mol Genet	A genome-wide association study of early menopause and the combined impact of identified variants.	Menopause (age at onset)	3,493 European ancestry cases, 13,598 European ancestry controls	3,412 European ancestry cases, 4,928 European ancestry controls	6p21.33	NR	rs1046089-A	0.3492	4E-11		0.1919	[0.13-0.25] years increase	NR [NR]	N
607	chr6_mann_hap4	2945850	2945851	rs1046089	22267201	Stolk L	2012-01-22	Nat Genet	Meta-analyses identify 13 loci associated with age at menopause and highlight DNA repair and immune pathways.	Menopause (age at onset)	38,968 European ancestry female individuals	Up to 14,435 European ancestry female individuals	6p21.33	PRRC2A	rs1046089-A	0.353	2E-16		0.213	[0.16-0.26] years decrease	Affymetrix, Illumina [2551160] (imputed)	N
607	chr6_mann_hap4	2946474	2946475	rs2261033	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PRRC2A	rs2261033-G	NR	3E-12		0.0196963	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
607	chr6_mann_hap4	2946474	2946475	rs2261033	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	PRRC2A	rs2261033-G	NR	2E-12		0.0222106	[0.016-0.028] unit increase	Affymetrix [323858] (imputed)	N
607	chr6_mann_hap4	2946474	2946475	rs2261033	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	PRRC2A	rs2261033-G	NR	5E-11		0.0185935	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
607	chr6_mann_hap4	2946474	2946475	rs2261033	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	PRRC2A	rs2261033-G	NR	2E-10		0.0200207	[0.014-0.026] unit increase	Affymetrix [127266] (imputed)	N
607	chr6_mann_hap4	2946474	2946475	rs2261033	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PRRC2A	rs2261033-G	NR	2E-11		0.0189094	[0.013-0.024] unit decrease	Affymetrix [321016] (imputed)	N
607	chr6_mann_hap4	2946474	2946475	rs2261033	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	PRRC2A	rs2261033-G	NR	3E-24		0.0314057	[0.025-0.037] unit decrease	Affymetrix [323123] (imputed)	N
607	chr6_mann_hap4	2946474	2946475	rs2261033	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	PRRC2A	rs2261033-G	NR	2E-12		0.0202126	[0.015-0.026] unit increase	Affymetrix [321169] (imputed)	N
607	chr6_mann_hap4	2946474	2946475	rs2261033	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.33	PRRC2A	rs2261033-A	0.5235	9E-11		0.0461	[0.032-0.06] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
607	chr6_mann_hap4	2947238	2947239	rs35502919	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	PRRC2A	rs35502919-A	NR	5E-11		0.0387702	[0.027-0.05] unit increase	Affymetrix [321169] (imputed)	N
607	chr6_mann_hap4	2947238	2947239	rs35502919	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	6p21.33	NR	rs35502919-?		9E-14	(AGER)	0.631	[NR] unit decrease	Illumina [NR]	N
607	chr6_mann_hap4	2947474	2947475	rs10885	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p21.33	PRRC2A	rs10885-T		2E-36		0.035	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
607	chr6_mann_hap4	2947777	2947778	rs34137317	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first birth	542,901 European ancestry individuals	NA	6p21.33	PRRC2A	rs34137317-T	0.0277	6E-10		0.2473	[0.17-0.33] unit increase	NR [9744772] (imputed)	N
607	chr6_mann_hap4	2948082	2948083	rs2736155	34741163	Eijsbouts C	2021-11-05	Nat Genet	Genome-wide analysis of 53,400 people with irritable bowel syndrome highlights shared genetic pathways with mood and anxiety disorders.	Irritable bowel syndrome	53,400 European ancestry cases, 433,201 European ancestry controls	205,252 European ancestry cases, 1,384,055 European ancestry controls	6p21.33	NR	rs2736155-C	0.4758	3E-12		0.022300169	[0.016-0.029] unit increase	Illumina [9885498] (imputed)	N
607	chr6_mann_hap4	2948082	2948083	rs2736155	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	PRRC2A	rs2736155-C	NR	6E-10		0.0194264	[0.013-0.026] unit increase	Affymetrix [323858] (imputed)	N
607	chr6_mann_hap4	2948082	2948083	rs2736155	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	PRRC2A	rs2736155-C	NR	8E-9		0.0180894	[0.012-0.024] unit increase	Affymetrix [127266] (imputed)	N
607	chr6_mann_hap4	2948082	2948083	rs2736155	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Anxiety	at least 23,606 European ancestry cases, at least 113,351 European ancestry controls	624,615 European ancestry cases, 1,310,854 European ancestry controls	6p21.33	PRRC2A	rs2736155-G	0.4811	5E-18		0.019583363	[0.015-0.025] unit decrease	NR [9417325] (imputed)	N
607	chr6_mann_hap4	2948082	2948083	rs2736155	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p21.33	NR	rs2736155-C	0.478	6E-7		0.0059	[0.0035-0.0083] unit increase	NR [7666894] (imputed)	N
607	chr6_mann_hap4	2948331	2948332	rs7889	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	6p21.33	BAG6	rs7889-C	0.3609	3E-8		0.012577614	[0.0082-0.017] unit increase	Affymetrix [11514654] (imputed)	N
607	chr6_mann_hap4	2948331	2948332	rs7889	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	6p21.33	PRRC2A	rs7889-C	0.3904	4E-14		0.2499	[0.19-0.31] mmHg decrease	Affymetrix [NR] (imputed)	N
607	chr6_mann_hap4	2949258	2949259	rs2077491	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	BAG6	rs2077491-C	NR	8E-13		0.0219509	[0.016-0.028] unit decrease	Affymetrix [323123] (imputed)	N
607	chr6_mann_hap4	2949258	2949259	rs2077491	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	BAG6	rs2077491-C	NR	2E-15		0.0226711	[0.017-0.028] unit increase	Affymetrix [321169] (imputed)	N
607	chr6_mann_hap4	2949258	2949259	rs2077491	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA	6p21.33	NR	rs2077491-?	NR	5E-6		0.0322	[0.018-0.046] unit decrease	Illumina [at least 560000] (imputed)	N
607	chr6_mann_hap4	2949549	2949553	rs757744062	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.33	BAG6	rs757744062-CAAAA	0.8204	4E-8		0.0522	[0.034-0.071] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
607	chr6_mann_hap4	2949638	2949639	rs2178899	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	6p21.33	NA	rs2178899-A	0.8833	5E-23		0.0243	[0.019-0.029] unit increase	NR [~ 27400000] (imputed)	N
607	chr6_mann_hap4	2949932	2949933	rs750332	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls	NA	6p21.33	BAG6	rs750332-C	0.180658	4E-14		0.055028614	[0.041-0.069] unit decrease	Affymetrix [7288503] (imputed)	N
607	chr6_mann_hap4	2953407	2953408	rs1077393	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	6p21.33	HLA-C	rs1077393-A	0.477302	2E-8		5.65	z score decrease	NR [10847151] (imputed)	N
607	chr6_mann_hap4	2953407	2953408	rs1077393	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling worry	372,869 European ancestry individuals	NA	6p21.33	HLA-C	rs1077393-A	0.477302	4E-10		6.267	unit decrease	NR [10847151] (imputed)	N
607	chr6_mann_hap4	2956627	2956628	rs3130048	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6p21.33	NR	rs3130048-?	NR	1E-11				Affymetrix [~ 8270000] (imputed)	N
607	chr6_mann_hap4	2956627	2956628	rs3130048	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	6p21.33	NA	rs3130048-T	0.7315	2E-20		0.0169	[0.013-0.02] unit decrease	NR [~ 27400000] (imputed)	N
607	chr6_mann_hap4	2959254	2959255	rs805303	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Systolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	6p21.33	BAT2, BAT5	rs805303-A	0.382	6E-6	(EA, initial)	0.368	[0.21-0.53] unit decrease	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
607	chr6_mann_hap4	2959254	2959255	rs805303	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Diastolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	6p21.33	BAT2, BAT5	rs805303-A	0.382	4E-6	(EA, initial)	0.23	[0.13-0.33] unit decrease	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
607	chr6_mann_hap4	2959254	2959255	rs805303	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Systolic blood pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	6p21.33	BAT2, BAT5	rs805303-A	0.3958	3E-6	(EA)	0.0174	unit decrease	Illumina [242296]	N
607	chr6_mann_hap4	2959254	2959255	rs805303	21909115	Ehret GB	2011-09-11	Nature	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Systolic blood pressure	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	6p21.33	BAT2, BAT5	rs805303-G	0.61	2E-11		0.376	[NR] mmHg increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
607	chr6_mann_hap4	2959254	2959255	rs805303	21909115	Ehret GB	2011-09-11	Nature	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Hypertension	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	6p21.33	BAT2, BAT5	rs805303-G	0.61	1E-10		0.054	[NR] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
607	chr6_mann_hap4	2959254	2959255	rs805303	21909115	Ehret GB	2011-09-11	Nature	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Diastolic blood pressure	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	6p21.33	BAT2, BAT5	rs805303-G	0.61	3E-11		0.228	[NR] mmHg increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
607	chr6_mann_hap4	2963022	2963023	rs2736201	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6p21.33	BAG6	rs2736201-C	0.156392	7E-12		0.036189657	[0.026-0.047] unit increase	Affymetrix [93095623] (imputed)	N
607	chr6_mann_hap4	2963022	2963023	rs2736201	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	6p21.33	BAG6	rs2736201-C	0.156492	3E-71		0.06142095	[0.055-0.068] unit increase	Affymetrix [93095623] (imputed)	N
607	chr6_mann_hap4	2963408	2963409	rs3117582	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Squamous cell lung carcinoma	8,350 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	6p21.33	NR	rs3117582-G	NR	2E-9		0.77	[0.71-0.84]	NR [NR] (imputed)	N
607	chr6_mann_hap4	2963408	2963409	rs3117582	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Non-small cell lung cancer	27,120 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	6p21.33	NR	rs3117582-G	NR	2E-6		0.87	[0.82-0.92]	NR [NR] (imputed)	N
607	chr6_mann_hap4	2963408	2963409	rs3117582	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p21.33	BAT3, APOM	rs3117582-C	0.34	1E-30				Illumina [118177]	N
607	chr6_mann_hap4	2963408	2963409	rs3117582	19836008	Landi MT	2009-10-15	Am J Hum Genet	A genome-wide association study of lung cancer identifies a region of chromosome 5p15 associated with risk for adenocarcinoma.	Lung adenocarcinoma	5,739 European ancestry cases, 5,848 European ancestry controls	7,561 European ancestry cases, 13,818 European ancestry controls	6p21.33	APOM, BAT3	rs3117582-C	0.10	5E-12		1.22	[1.15-1.29]	Illumina [515922]	N
607	chr6_mann_hap4	2963408	2963409	rs3117582	19654303	Broderick P	2009-08-04	Cancer Res	Deciphering the impact of common genetic variation on lung cancer risk: a genome-wide association study.	Lung cancer	1,952 European ancestry cases, 1,438 European ancestry controls	2,465 European ancestry cases, 3,005 European ancestry controls, 3,143 individuals, 3,762 individuals	6p21.33	BAT3	rs3117582-?	NR	4E-10		1.24	[1.16-1.33]	Illumina [511919]	N
607	chr6_mann_hap4	2963408	2963409	rs3117582	18978787	Wang Y	2008-11-02	Nat Genet	Common 5p15.33 and 6p21.33 variants influence lung cancer risk.	Lung cancer	5,095 European ancestry cases, 5,200 European ancestry controls	2,448 European ancestry cases, 2,983 European ancestry controls	6p21.33	BAT3, MSH5	rs3117582-C	NR	5E-10		1.24	[1.16-1.33]	Illumina [223891]	N
607	chr6_mann_hap4	2964931	2964932	rs1266078	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	APOM	rs1266078-G	0.032	3E-12	(Apolipoprotein M, APOM.10445.20.3)	0.49	[0.35-0.63] unit decrease	Affymetrix [10572788] (imputed)	N
607	chr6_mann_hap4	2965494	2965495	rs805297	21844665	Hu HJ	2011-08-16	Exp Mol Med	Common variants at the promoter region of the APOM confer a risk of rheumatoid arthritis.	Rheumatoid arthritis	100 Korean ancestry cases, 600 Korean ancestry controls	578 Korean ancestry cases, 711 Korean ancestry controls	6p21.33	APOM	rs805297-A	0.36	3E-10		1.56	[1.36-1.80]	Affymetrix [300909]	N
607	chr6_mann_hap4	2967353	2967354	rs113947529	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ISG15	5,349 Icelandic ancestry individuals	NA	6p21.33		rs113947529-T	0.01503	5E-16		0.622819	[0.47-0.77] unit decrease	Illumina [7506463] (imputed)	N
607	chr6_mann_hap4	2971002	2971003	rs805263	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p21.33	C6orf47	rs805263-C	0.026972	3E-12		0.049836818	[0.036-0.064] unit increase	Affymetrix [93095623] (imputed)	N
607	chr6_mann_hap4	2971286	2971287	rs148844907	33608531	Wu Y	2021-02-19	Nat Commun	GWAS of peptic ulcer disease implicates Helicobacter pylori infection, other gastrointestinal disorders and depression.	Inflammatory bowel disease	7,045 European ancestry cases, 449,282 European ancestry controls	NA	6p21.33	NR	rs148844907-T	0.99	1E-40		0.47	[NR]	NR [8546065] (imputed)	N
607	chr6_mann_hap4	2971286	2971287	rs148844907	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p21.33	C6orf47	rs148844907-A	0.01	2E-12		1.92	[1.74-2.12]	Illumina [at least 560000] (imputed)	N
607	chr6_mann_hap4	2971622	2971623	rs805262	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (mother's age at death or mother's attained age)	up to 699,000 individuals	NA	6p21.33	NR	rs805262-G		7E-7				Illumina [458525]	N
607	chr6_mann_hap4	2973720	2973721	rs805260	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	GPANK1	rs805260-G	NR	8E-13		0.0307796	[0.022-0.039] unit decrease	Affymetrix [323123] (imputed)	N
607	chr6_mann_hap4	2974223	2974224	rs76072474	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	6p21.33	NR	rs76072474-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
607	chr6_mann_hap4	2974223	2974224	rs76072474	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	6p21.33	NR	rs76072474-?	NR	1E-11				Affymetrix [~ 8270000] (imputed)	N
607	chr6_mann_hap4	2975023	2975024	rs3130618	25344690	Feenstra B	2014-10-26	Nat Genet	Common variants associated with general and MMR vaccine-related febrile seizures.	Febrile seizures (MMR vaccine-related)	929 European ancestry cases, 4,118 European ancestry controls	Up to 408 European ancestry cases, Up to 1,645 European ancestry controls	6p21.33	GPANK1	rs3130618-C	0.79	2E-7		1.34	[1.20-1.49]	Illumina [8129524] (imputed)	N
607	chr6_mann_hap4	2975023	2975024	rs3130618	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.33	BAT4	rs3130618-A	0.1811	2E-56		3.03	[NR]	Illumina [242824]	N
607	chr6_mann_hap4	2978832	2978833	rs115820082	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	CSNK2B, CSNK2B-LY6G5B-1181	rs115820082-G	NR	4E-12		0.0902636	[0.065-0.116] unit decrease	Affymetrix [321016] (imputed)	N
607	chr6_mann_hap4	2978920	2978921	rs3117578	31375628	Tengvall K	2019-08-02	Proc Natl Acad Sci U S A	Molecular mimicry between Anoctamin 2 and Epstein-Barr virus nuclear antigen 1 associates with multiple sclerosis risk.	Anti-anoctamin 2 antibody levels	11,936 European ancestry individuals	NA	6p21.33	NR	rs3117578-A	NR	2E-7		0.063	[0.034-0.092] unit increase	Illumina [615763]	N
607	chr6_mann_hap4	2979631	2979632	rs9267531	26316170	Demirci FY	2015-08-28	Arthritis Rheumatol	Identification of a New Susceptibility Locus for Systemic Lupus Erythematosus on Chromosome 12 in Individuals of European Ancestry.	Systemic lupus erythematosus	661 European ancestry cases, 487 European ancestry controls	4,467 European ancestry cases, 9,114 European ancestry controls	6p21.33	CSNK2B	rs9267531-?	NR	8E-8				Affymetrix [up to 700598]	N
607	chr6_mann_hap4	2979631	2979632	rs9267531	25827949	Kunz M	2015-05-04	Exp Dermatol	Genome-wide association study identifies new susceptibility loci for cutaneous lupus erythematosus.	Cutaneous lupus erythematosus	151 European ancestry cases, 1,288 European ancestry controls	219 European ancestry cases, 262 European ancestry controls	6p21.33	CSNK2B, MSH5, MICA, MICB	rs9267531-G	0.1	3E-14		2.62	[1.93-3.54]	Affymetrix [906600]	N
607	chr6_mann_hap4	2981067	2981068	rs805268	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p21.33		rs805268-A	0.969	9E-19				Affymetrix [10369434] (imputed)	N
607	chr6_mann_hap4	2994083	2994084	rs9267536	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6p21.33	BAT5	rs9267536-?	NR	6E-6	(TAG 52:6)	0.34227857	[0.19-0.49] unit increase	Affymetrix [at least 2500000] (imputed)	N
607	chr6_mann_hap4	3008340	3008341	rs805273	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	ABHD16A, XXbac-BPG32J3.20, MIR4646	rs805273-A	0.06820461	5E-16	(Complement C4)	0.699	[0.53-0.87] unit increase	Affymetrix [509946]	N
607	chr6_mann_hap4	3012386	3012387	rs1266071	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	6p21.33	ABHD16A, XXbac-BPG32J3.20	rs1266071-T	0.107214	4E-14		0.027769113	[0.021-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
608	chr6_mann_hap4	3015158	3015159	rs34406901	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	6p21.33	XXbac-BPG32J3.20	rs34406901-G	0.0566	7E-15		0.039119102	[0.029-0.049] unit increase	Affymetrix [93095623] (imputed)	N
608	chr6_mann_hap4	3016326	3016327	rs9267546	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LIPA	5,367 Icelandic ancestry individuals	NA	6p21.33		rs9267546-A	0.08009	2E-15		0.274526	[0.21-0.34] unit increase	Illumina [7506463] (imputed)	N
608	chr6_mann_hap4	3018656	3018657	rs2242653	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	6p21.33	NR	rs2242653-?	NR	3E-10	(MIC-A)	0.545677	[0.38-0.71] unit decrease	Illumina [11901634] (imputed)	N
608	chr6_mann_hap4	3018876	3018877	rs9267548	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p21.33	NR	rs9267548-?	NR	5E-9		0.1189	[0.079-0.159] unit decrease	Illumina [at least 560000] (imputed)	N
608	chr6_mann_hap4	3022359	3022360	rs805285	33941608	Khan A	2021-05-03	J Am Soc Nephrol	Medical Records-Based Genetic Studies of the Complement System.	Complement C4 levels	3,247 European ancestry individuals, 600 African ancestry individuals, 151 East Asian ancestry individuals	NA	6p21.33	C4	rs805285-C	0.32	1E-14		0.19	[0.15-0.22] unit increase	NR [NR] (imputed)	N
608	chr6_mann_hap4	3022359	3022360	rs805285	33941608	Khan A	2021-05-03	J Am Soc Nephrol	Medical Records-Based Genetic Studies of the Complement System.	Complement C4 levels	3,247 European ancestry individuals, 600 African ancestry individuals, 151 East Asian ancestry individuals	NA	6p21.33	C4	rs805285-C	0.25	2E-10	(EA)	0.18	[0.14-0.22] unit increase	NR [NR] (imputed)	N
608	chr6_mann_hap4	3029385	3029386	rs15574	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking initiation (ever regular vs never regular)	up to 433,216 European ancestry individuals	NA	6p21.33	LY6G6C	rs15574-A	0.194	7E-9		0.0159	[0.011-0.021] unit increase	Illumina [~ 250000] (imputed)	N
608	chr6_mann_hap4	3031105	3031106	rs805294	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.33		rs805294-A	0.644	4E-13				Affymetrix [10369434] (imputed)	N
608	chr6_mann_hap4	3031406	3031407	rs805293	31879980	German CA	2019-12-26	Genet Epidemiol	Ordered multinomial regression for genetic association analysis of ordinal phenotypes at Biobank scale.	Hypertension	30,822 British ancestry normal blood pressure individuals, 25,242 British ancestry elevated blood pressure individuals, 50,461 British ancestry stage 1 hypertension individuals, 75,286 British ancestry stage 2 hypertension individuals, 3,754 British ancestry hypertension crisis individuals	NA	6p21.33	MPIG6B	rs805293-?	NR	3E-12		0.0433015	NR unit decrease	Affymetrix [464137]	N
608	chr6_mann_hap4	3031406	3031407	rs805293	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	6p21.33	NR	rs805293-A	0.46	8E-9		0.00643097	[0.0042-0.0086] unit decrease	NR [9732723] (imputed)	N
608	chr6_mann_hap4	3034545	3034546	rs453098	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SEMA6C	5,362 Icelandic ancestry individuals	NA	6p21.33		rs453098-A	0.07505	1E-13		0.264219	[0.19-0.33] unit increase	Illumina [7506463] (imputed)	N
608	chr6_mann_hap4	3034545	3034546	rs453098	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PCDHGA11	5,360 Icelandic ancestry individuals	NA	6p21.33		rs453098-A	0.07505	4E-12		0.237269	[0.17-0.3] unit increase	Illumina [7506463] (imputed)	N
608	chr6_mann_hap4	3034545	3034546	rs453098	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HSPA1A	5,360 Icelandic ancestry individuals	NA	6p21.33		rs453098-A	0.07505	8E-15		0.272702	[0.2-0.34] unit increase	Illumina [7506463] (imputed)	N
608	chr6_mann_hap4	3035274	3035275	rs11575845	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C6orf25	5,363 Icelandic ancestry individuals	NA	6p21.33		rs11575845-G	0.03386	7E-46		0.736966	[0.64-0.84] unit decrease	Illumina [7506463] (imputed)	N
608	chr6_mann_hap4	3035274	3035275	rs11575845	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6p21.33		rs11575845-?	NR	4E-7		0.890554	[0.85-0.94]	NR [685523]	N
608	chr6_mann_hap4	3035274	3035275	rs11575845	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	6p21.33	C6orf25	rs11575845-G	0.06333	6E-27		0.05543542	[0.045-0.066] unit increase	Affymetrix [93095623] (imputed)	N
608	chr6_mann_hap4	3040276	3040277	rs805305	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C6orf25	5,363 Icelandic ancestry individuals	NA	6p21.33		rs805305-G	0.32	4E-22		0.196057	[0.16-0.24] unit increase	Illumina [7506463] (imputed)	N
608	chr6_mann_hap4	3040447	3040448	rs707916	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling nervous	373,121 European ancestry individuals	NA	6p21.33	CCHCR1	rs707916-A	0.365563	2E-13		7.35	z score decrease	NR [10847151] (imputed)	N
608	chr6_mann_hap4	3047304	3047305	rs115204832	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ISG15	5,349 Icelandic ancestry individuals	NA	6p21.33		rs115204832-G	0.01432	1E-183		2.1193	[1.98-2.26] unit decrease	Illumina [7506463] (imputed)	N
608	chr6_mann_hap4	3047304	3047305	rs115204832	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C2	5,363 Icelandic ancestry individuals	NA	6p21.33		rs115204832-G	0.01432	1E-282		2.53186	[2.39-2.67] unit decrease	Illumina [7506463] (imputed)	N
608	chr6_mann_hap4	3048019	3048020	rs145269503	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	6p21.33	CLIC1	rs145269503-A	0.0221	3E-36		0.1547004	[0.13-0.18] unit decrease	Affymetrix [~ 2500000] (imputed)	N
608	chr6_mann_hap4	3049742	3049743	rs2736154	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		6p21.33	CLIC1	rs2736154-A	0.790274	4E-8		0.0109563	[0.007-0.0149] unit increase	Affymetrix [12370749]	N
608	chr6_mann_hap4	3050415	3050416	rs28381344	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	6p21.33	NR	rs28381344-A	0.0438845616860758	1E-8		0.020618176	[0.014-0.028] unit increase	NR [NR]	N
608	chr6_mann_hap4	3050415	3050416	rs28381344	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	6p21.33	NR	rs28381344-A	0.0438845616860758	1E-8		0.013281214	[0.0087-0.0179] unit increase	NR [NR]	N
608	chr6_mann_hap4	3050415	3050416	rs28381344	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Strep throat	52,487 European ancestry cases, 22,017 European ancestry controls	NA	6p21.33	NR	rs28381344-?	NR	1E-6		0.0694	[0.041-0.098] unit decrease	Illumina [at least 560000] (imputed)	N
608	chr6_mann_hap4	3050619	3050620	rs3131382	32752121	Nedoszytko B	2020-07-31	Int J Mol Sci	Results from a Genome-Wide Association Study (GWAS) in Mastocytosis Reveal New Gene Polymorphisms Associated with WHO Subgroups.	Systemic mastocytosis	93 European ancestry cases, 5,606 European ancestry controls	NA	6p21.33	MSH5	rs3131382-A	0.03194	9E-7		3.247	[2.75-3.74]	Illumina [281811]	N
608	chr6_mann_hap4	3050619	3050620	rs3131382	32752121	Nedoszytko B	2020-07-31	Int J Mol Sci	Results from a Genome-Wide Association Study (GWAS) in Mastocytosis Reveal New Gene Polymorphisms Associated with WHO Subgroups.	Mastocytosis	234 European ancestry cases, 5,606 European ancestry controls	NA	6p21.33	MSH5	rs3131382-A	0.03194	3E-8		2.602	[2.25-2.95]	Illumina [281811]	N
608	chr6_mann_hap4	3051036	3051037	rs409558	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	CLIC1, MSH5-SAPCD1, MSH5, SAPCD1-AS1, RNU6-850P, SAPCD1, VARS, VWA7	rs409558-C	0.1591365	1E-10	(EA, Complement C4)	0.3861	[0.27-0.5] unit increase	Affymetrix [509946]	N
608	chr6_mann_hap4	3051036	3051037	rs409558	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Systolic blood pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	154,543 European ancestry individuals, 26,183 South Asian ancestry individuals	6p21.33	MSH5, SAPCD1	rs409558-G	0.176	6E-8		0.33	[0.21-0.45] unit decrease	Illumina [247039]	N
608	chr6_mann_hap4	3051036	3051037	rs409558	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Pulse pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	154,543 European ancestry individuals, 26,183 South Asian ancestry individuals	6p21.33	MSH5, SAPCD1	rs409558-G	0.176	3E-9		0.26	[0.18-0.34] unit decrease	Illumina [247039]	N
608	chr6_mann_hap4	3051799	3051800	rs28381348	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p21.33	MSH5	rs28381348-C	0.04	5E-6	(EA)	2.81	[1.77-4.47]	Illumina [up to 547389]	N
608	chr6_mann_hap4	3052222	3052223	rs1144709	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	6p21.33	Intergenic	rs1144709-T	0.2281	3E-10	(MTAG)	0.0134	[0.0093-0.0175] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
608	chr6_mann_hap4	3052222	3052223	rs1144709	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	6p21.33	Intergenic	rs1144709-C	0.7719	6E-9		0.0135	[0.009-0.018] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
608	chr6_mann_hap4	3052222	3052223	rs1144709	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	6p21.33	Intergenic	rs1144709-C	0.7725	3E-10		0.017	[0.012-0.022] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
608	chr6_mann_hap4	3052977	3052978	rs28381350	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	6p21.33	PRRC2A	rs28381350-A	0.1297	5E-9	(S1P d16:1)	0.1104	[0.073-0.147] unit decrease	Illumina [~ 47000000] (imputed)	N
608	chr6_mann_hap4	3056327	3056328	rs3828922	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	CLIC1, MSH5-SAPCD1, MSH5, SAPCD1-AS1, RNU6-850P, SAPCD1, VARS, VWA7	rs3828922-T	0.1584754	2E-19	(EA, MHC class I polypeptide-related sequence A)	0.5315	[0.42-0.64] unit decrease	Affymetrix [509946]	N
608	chr6_mann_hap4	3060573	3060574	rs3117572	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MSH5, MSH5-SAPCD1	rs3117572-A	NR	2E-9		0.023199	[0.016-0.031] unit increase	Affymetrix [323123] (imputed)	N
608	chr6_mann_hap4	3060573	3060574	rs3117572	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	MSH5, MSH5-SAPCD1	rs3117572-A	NR	7E-10		0.0221723	[0.015-0.029] unit decrease	Affymetrix [321169] (imputed)	N
609	chr6_mann_hap4	3151609	3151610	rs117217736	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.33	NR	rs117217736-T	0.991	1E-12		0.479	[0.28-0.68]	Illumina [11270530] (imputed)	N
609	chr6_mann_hap4	3152998	3153001	rs74887990	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	6p21.33	C6orf48	rs74887990-T	0.0231	6E-16		0.063891105	[0.048-0.079] unit increase	Affymetrix [93095623] (imputed)	N
609	chr6_mann_hap4	3154444	3154445	rs3130479	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	C6orf48	rs3130479-A	NR	2E-10		0.0294674	[0.02-0.038] unit increase	Affymetrix [321169] (imputed)	N
609	chr6_mann_hap4	3154919	3154920	rs9267576	31375628	Tengvall K	2019-08-02	Proc Natl Acad Sci U S A	Molecular mimicry between Anoctamin 2 and Epstein-Barr virus nuclear antigen 1 associates with multiple sclerosis risk.	Anti-anoctamin 2 antibody levels	11,936 European ancestry individuals	NA	6p21.33	NR	rs9267576-A	NR	2E-8		0.07	[0.041-0.099] unit increase	Illumina [615763]	N
609	chr6_mann_hap4	3155853	3155854	rs144527861	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	6p21.33	PRRC2A	rs144527861-A	0.1297	2E-9	(S1P d16:1)	0.115	[0.078-0.152] unit decrease	Illumina [~ 47000000] (imputed)	N
609	chr6_mann_hap4	3158939	3158940	rs28732162	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p21.33	NR	rs28732162-?	NR	7E-17		0.1769	[0.14-0.22] unit increase	Illumina [at least 560000] (imputed)	N
609	chr6_mann_hap4	3160988	3160989	rs9267578	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	NEU1	rs9267578-T	NR	6E-10		0.025611	[0.018-0.034] unit decrease	Affymetrix [319769] (imputed)	N
609	chr6_mann_hap4	3163522	3163523	rs2736429	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling nervous	373,121 European ancestry individuals	NA	6p21.33	NR	rs2736429-A	0.384863	6E-12		6.89	z score increase	NR [10847151] (imputed)	N
609	chr6_mann_hap4	3164062	3164063	rs370025470	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	6p21.33	NEU1	rs370025470-C	0.030144	3E-16		0.056601908	[0.043-0.07] unit increase	Affymetrix [93095623] (imputed)	N
609	chr6_mann_hap4	3164821	3164822	rs35745547	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	NEU1	rs35745547-A	NR	1E-9		0.0190063	[0.013-0.025] unit increase	Affymetrix [321169] (imputed)	N
609	chr6_mann_hap4	3165673	3165674	rs9267647	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	6p21.33	NEU1	rs9267647-T	0.132946	4E-11		0.022519508	[0.016-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
609	chr6_mann_hap4	3166314	3166315	rs115310850	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.33	NR	rs115310850-A	0.01	2E-11		0.616842	[0.44-0.8] unit increase	Affymetrix [up to 8900000] (imputed)	N
609	chr6_mann_hap4	3167970	3167971	rs9267650	27539887	Chahal HS	2016-08-19	Nat Commun	Genome-wide association study identifies 14 novel risk alleles associated with basal cell carcinoma.	Basal cell carcinoma	12.945 European ancestry cases, 274,252 European ancestry controls	4,242 European ancestry cases, 12,802 European ancestry controls	6p21.33	NEU1	rs9267650-T	0.05	1E-8		1.17	[NR]	Illumina [at least 560000] (imputed)	N
609	chr6_mann_hap4	3169763	3169764	rs622076	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C2	5,363 Icelandic ancestry individuals	NA	6p21.33		rs622076-A	0.1077	2E-23		0.300008	[0.24-0.36] unit increase	Illumina [7506463] (imputed)	N
609	chr6_mann_hap4	3169763	3169764	rs622076	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	6p21.33	NEU1	rs622076-A	0.1361	3E-14	(discovery)	0.0035	[0.0025-0.0045] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
609	chr6_mann_hap4	3170344	3170345	rs13118	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6p21.33	SLC44A4	rs13118-?	NR	5E-6	(TAG 52:6)	0.3502205	[0.2-0.5] unit increase	Affymetrix [at least 2500000] (imputed)	N
609	chr6_mann_hap4	3227880	3227881	rs3130682	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	6p21.33	C2	rs3130682-T	NR	1E-16		0.0630215	[0.048-0.078] unit decrease	Illumina [13520550] (imputed)	N
609	chr6_mann_hap4	3228987	3228988	rs3128759	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	153,512 East Asian ancestry individuals	NA	6p21.33		rs3128759-T	0.915106	7E-17		0.0465594	[0.036-0.058] unit increase	Illumina [13479135] (imputed)	N
609	chr6_mann_hap4	3230316	3230317	rs115009784	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL15	5,365 Icelandic ancestry individuals	NA	6p21.33		rs115009784-A	0.04844	1E-13		0.324224	[0.24-0.41] unit decrease	Illumina [7506463] (imputed)	N
609	chr6_mann_hap4	3231424	3231425	rs3130683	28714975	Nelson CP	2017-07-17	Nat Genet	Association analyses based on false discovery rate implicate new loci for coronary artery disease.	Coronary artery disease (myocardial infarction, percutaneous transluminal coronary angioplasty, coronary artery bypass grafting, angina or chromic ischemic heart disease)	18,467 European and unknown ancestry cases, 45,264 European and unknown ancestry controls	57,347 European and unknown ancestry cases, 219,521 European and unknown ancestry controls	6p21.33	C2	rs3130683-T	0.86	3E-8		1.08	[1.05-1.11]	Affymetrix [9149595] (imputed)	N
609	chr6_mann_hap4	3235541	3235542	rs497309	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in diabetes	70,762 European ancestry individuals, 20,967 African American individuals	NA	6p21.33	C2	rs497309-A	0.902	5E-12		1.009	[0.72-1.3] unit increase	Affymetrix [NR] (imputed)	N
609	chr6_mann_hap4	3235698	3235699	rs9267677	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	6p21.33	Intergenic	rs9267677-T	0.8962	7E-16	(MTAG)	0.0218	[0.017-0.027] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
609	chr6_mann_hap4	3235698	3235699	rs9267677	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6p21.33		rs9267677-T	0.9029	4E-14		0.018	[0.013-0.023] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
609	chr6_mann_hap4	3235698	3235699	rs9267677	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6p21.33	Intergenic	rs9267677-T	0.9029	8E-18	(MTAG)	0.0191	[0.015-0.023] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
609	chr6_mann_hap4	3235698	3235699	rs9267677	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	6p21.33	Intergenic	rs9267677-T	0.9038	2E-9	(MTAG)	0.0233	[0.016-0.031] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
609	chr6_mann_hap4	3237001	3237002	rs2734335	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	C2	rs2734335-A	NR	2E-8		0.0157901	[0.01-0.021] unit decrease	Affymetrix [321016] (imputed)	N
609	chr6_mann_hap4	3237412	3237413	rs556679	33893285	Guindo-Martinez M	2021-04-23	Nat Commun	The impact of non-additive genetic associations on age-related complex diseases.	Age-related macular degeneration	3,685 European ancestry cases, 52,952 European ancestry controls	NA	6p21.33		rs556679-T	0.1113519	5E-21		0.66		Affymetrix [15377238] (imputed)	N
609	chr6_mann_hap4	3239030	3239031	rs7746553	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	6p21.33	C2	rs7746553-C	0.848517	5E-8		0.0160902	[0.01-0.022] unit increase	NR [16516521] (imputed)	N
609	chr6_mann_hap4	3240276	3240277	rs9283893	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	SKIV2L, C2, XXbac-BPG116M5.17, NELFE, MIR1236, DXO, STK19	rs9283893-A	0.0446339	1E-32	(Neutrophil collagenase)	1.199	[1.01-1.39] unit increase	Affymetrix [509946]	N
609	chr6_mann_hap4	3243562	3243563	rs184265581	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	6p21.33	NR	rs184265581-C	0.012356999999999951	6E-27		0.132322	[0.11-0.16] unit increase	Affymetrix [16580851] (imputed)	N
609	chr6_mann_hap4	3246609	3246610	rs9332739	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CFB	5,365 Icelandic ancestry individuals	NA	6p21.33		rs9332739-C	0.0495	8E-121		0.960939	[0.88-1.04] unit decrease	Illumina [7506463] (imputed)	N
609	chr6_mann_hap4	3246609	3246610	rs9332739	22705344	Sobrin L	2012-06-15	Ophthalmology	Heritability and genome-wide association study to assess genetic differences between advanced age-related macular degeneration subtypes.	Age-related macular degeneration (geographic atrophy)	819 European ancestry geographic atrophy cases, 4,134 European ancestry controls	NA	6p21.33	C2	rs9332739-?	0.955	1E-6		2.63	[1.79-3.85]	Affymetrix, Illumina [6036699] (imputed)	N
609	chr6_mann_hap4	3246609	3246610	rs9332739	22705344	Sobrin L	2012-06-15	Ophthalmology	Heritability and genome-wide association study to assess genetic differences between advanced age-related macular degeneration subtypes.	Age-related macular degeneration (choroidal neovascularisation)	1,775 European ancestry choroidal neovascularization cases, 4,134 European ancestry controls	4,515 European and unknown ancestry choroidal neovascularization cases, 15,240 European and unknown ancestry controls	6p21.33	C2	rs9332739-?	0.955	2E-8		2.08	[1.61-2.7]	Affymetrix, Illumina [6036699] (imputed)	N
609	chr6_mann_hap4	3246609	3246610	rs9332739	21665990	Yu Y	2011-06-10	Hum Mol Genet	Common variants near FRK/COL10A1 and VEGFA are associated with advanced age-related macular degeneration.	Age-related macular degeneration	2,594 European ancestry cases, 4,134 European ancestry controls	5,640 European ancestry cases, 52,174 European ancestry controls	6p21.33	C2	rs9332739-?	0.96	2E-23		2.17	[NR]	Affymetrix [6036699] (imputed)	N
609	chr6_mann_hap4	3247933	3247934	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ZNF276	5,363 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	6E-17		0.263299	[0.2-0.32] unit increase	Illumina [7506463] (imputed)	N
609	chr6_mann_hap4	3247933	3247934	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ZAP70	5,357 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	2E-20		0.28156	[0.22-0.34] unit increase	Illumina [7506463] (imputed)	N
609	chr6_mann_hap4	3247933	3247934	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein WIF1	5,349 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	4E-12		0.207313	[0.15-0.27] unit increase	Illumina [7506463] (imputed)	N
609	chr6_mann_hap4	3247933	3247934	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein UTS2	5,348 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	2E-13		0.213721	[0.16-0.27] unit increase	Illumina [7506463] (imputed)	N
609	chr6_mann_hap4	3247933	3247934	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TPM2	5,353 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	6E-19		0.271948	[0.21-0.33] unit increase	Illumina [7506463] (imputed)	N
609	chr6_mann_hap4	3247933	3247934	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TMCC3	5,355 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	6E-19		0.272099	[0.21-0.33] unit increase	Illumina [7506463] (imputed)	N
609	chr6_mann_hap4	3247933	3247934	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SYNCRIP	5,354 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	3E-16		0.244214	[0.19-0.3] unit increase	Illumina [7506463] (imputed)	N
609	chr6_mann_hap4	3247933	3247934	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RPS10	5,348 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	8E-14		0.223731	[0.16-0.28] unit increase	Illumina [7506463] (imputed)	N
609	chr6_mann_hap4	3247933	3247934	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RNF43	5,340 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	2E-12		0.20687	[0.15-0.26] unit increase	Illumina [7506463] (imputed)	N
609	chr6_mann_hap4	3247933	3247934	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RGS8	5,356 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	5E-18		0.263545	[0.2-0.32] unit increase	Illumina [7506463] (imputed)	N
609	chr6_mann_hap4	3247933	3247934	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RAD51	5,354 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	2E-17		0.254863	[0.2-0.31] unit increase	Illumina [7506463] (imputed)	N
609	chr6_mann_hap4	3247933	3247934	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RAB5C	5,347 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	8E-15		0.22726	[0.17-0.28] unit increase	Illumina [7506463] (imputed)	N
609	chr6_mann_hap4	3247933	3247934	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RAB17	5,352 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	2E-16		0.244122	[0.19-0.3] unit increase	Illumina [7506463] (imputed)	N
609	chr6_mann_hap4	3247933	3247934	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PTPN1	5,343 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	2E-12		0.199884	[0.14-0.26] unit increase	Illumina [7506463] (imputed)	N
609	chr6_mann_hap4	3247933	3247934	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein POLR1C	5,352 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	4E-15		0.236472	[0.18-0.3] unit increase	Illumina [7506463] (imputed)	N
609	chr6_mann_hap4	3247933	3247934	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PIK3CG	5,349 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	3E-18		0.254662	[0.2-0.31] unit increase	Illumina [7506463] (imputed)	N
609	chr6_mann_hap4	3247933	3247934	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PCDHB4	5,352 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	1E-14		0.230172	[0.17-0.29] unit increase	Illumina [7506463] (imputed)	N
609	chr6_mann_hap4	3247933	3247934	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PCDHB14	5,352 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	9E-17		0.252266	[0.19-0.31] unit increase	Illumina [7506463] (imputed)	N
609	chr6_mann_hap4	3247933	3247934	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NRXN3	5,346 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	3E-14		0.227034	[0.17-0.29] unit increase	Illumina [7506463] (imputed)	N
609	chr6_mann_hap4	3247933	3247934	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NDUFB4	5,364 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	9E-14		0.235159	[0.17-0.3] unit increase	Illumina [7506463] (imputed)	N
609	chr6_mann_hap4	3247933	3247934	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MST1R	5,341 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	7E-16		0.227077	[0.17-0.28] unit increase	Illumina [7506463] (imputed)	N
609	chr6_mann_hap4	3247933	3247934	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MOCS3	5,351 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	8E-15		0.232526	[0.17-0.29] unit increase	Illumina [7506463] (imputed)	N
609	chr6_mann_hap4	3247933	3247934	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein KLK6	5,348 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	1E-15		0.225461	[0.17-0.28] unit increase	Illumina [7506463] (imputed)	N
609	chr6_mann_hap4	3247933	3247934	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein KLK12	5,359 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	1E-19		0.280976	[0.22-0.34] unit increase	Illumina [7506463] (imputed)	N
609	chr6_mann_hap4	3247933	3247934	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL18R1	5,351 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	5E-12		0.21193	[0.15-0.27] unit increase	Illumina [7506463] (imputed)	N
609	chr6_mann_hap4	3247933	3247934	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL10RA	5,353 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	1E-13		0.230011	[0.17-0.29] unit increase	Illumina [7506463] (imputed)	N
609	chr6_mann_hap4	3247933	3247934	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IGFL3	5,350 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	5E-15		0.237003	[0.18-0.3] unit increase	Illumina [7506463] (imputed)	N
609	chr6_mann_hap4	3247933	3247934	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GBP6	5,348 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	5E-12		0.206328	[0.15-0.26] unit increase	Illumina [7506463] (imputed)	N
609	chr6_mann_hap4	3247933	3247934	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FRZB	5,350 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	5E-13		0.207917	[0.15-0.26] unit increase	Illumina [7506463] (imputed)	N
609	chr6_mann_hap4	3247933	3247934	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FCER1A	5,348 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	1E-19		0.272221	[0.21-0.33] unit increase	Illumina [7506463] (imputed)	N
609	chr6_mann_hap4	3247933	3247934	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DSG1	5,349 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	4E-16		0.242273	[0.18-0.3] unit increase	Illumina [7506463] (imputed)	N
609	chr6_mann_hap4	3247933	3247934	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DCUN1D5	5,344 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	2E-13		0.212735	[0.16-0.27] unit increase	Illumina [7506463] (imputed)	N
609	chr6_mann_hap4	3247933	3247934	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CRABP1	5,340 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	4E-13		0.209239	[0.15-0.27] unit increase	Illumina [7506463] (imputed)	N
609	chr6_mann_hap4	3247933	3247934	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CLEC12B	5,357 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	4E-18		0.267882	[0.21-0.33] unit increase	Illumina [7506463] (imputed)	N
609	chr6_mann_hap4	3247933	3247934	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CDK5;CDK5R1	5,339 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	2E-15		0.225529	[0.17-0.28] unit increase	Illumina [7506463] (imputed)	N
609	chr6_mann_hap4	3247933	3247934	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CCL1	5,354 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	1E-15		0.242251	[0.18-0.3] unit increase	Illumina [7506463] (imputed)	N
609	chr6_mann_hap4	3247933	3247934	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CA4	5,356 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	2E-13		0.225651	[0.17-0.29] unit increase	Illumina [7506463] (imputed)	N
609	chr6_mann_hap4	3247933	3247934	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C2orf40	5,353 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	3E-12		0.217148	[0.16-0.28] unit increase	Illumina [7506463] (imputed)	N
609	chr6_mann_hap4	3247933	3247934	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein BCL2L10	5,355 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	9E-14		0.231319	[0.17-0.29] unit increase	Illumina [7506463] (imputed)	N
609	chr6_mann_hap4	3247933	3247934	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein BCL2L1	5,350 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	1E-17		0.257737	[0.2-0.32] unit increase	Illumina [7506463] (imputed)	N
609	chr6_mann_hap4	3247933	3247934	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein AZGP1	5,362 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	1E-19		0.281057	[0.22-0.34] unit increase	Illumina [7506463] (imputed)	N
609	chr6_mann_hap4	3247933	3247934	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ANXA10	5,345 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	6E-13		0.218401	[0.16-0.28] unit increase	Illumina [7506463] (imputed)	N
609	chr6_mann_hap4	3247933	3247934	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein AKT3	5,346 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	2E-14		0.217044	[0.16-0.27] unit increase	Illumina [7506463] (imputed)	N
609	chr6_mann_hap4	3247933	3247934	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein AHSA1	5,351 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	2E-15		0.242628	[0.18-0.3] unit increase	Illumina [7506463] (imputed)	N
609	chr6_mann_hap4	3247933	3247934	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ADGRE5	5,359 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	3E-18		0.271861	[0.21-0.33] unit increase	Illumina [7506463] (imputed)	N
609	chr6_mann_hap4	3247933	3247934	rs1042663	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs1042663-A	0.095	5E-18	(ER membrane protein complex subunit 4, EMC4.13516.46.3)	0.36	[0.28-0.44] unit decrease	Affymetrix [10572788] (imputed)	N
609	chr6_mann_hap4	3248813	3248814	rs9380272	20385819	Chen W	2010-04-12	Proc Natl Acad Sci U S A	Genetic variants near TIMP3 and high-density lipoprotein-associated loci influence susceptibility to age-related macular degeneration.	Age-related macular degeneration	2,157 European ancestry cases, 1,150 European ancestry controls	7,892 European ancestry cases, 5,998 European ancestry controls, 678 Japanese ancestry cases, 336 Japanese ancestry controls	6p21.33	CFB, C2	rs9380272-A	0.012	2E-8		4.31	[2.76-6.87]	Illumina [~ 2500000] (imputed)	N
609	chr6_mann_hap4	3249637	3249638	rs78593564	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PSMD11	5,350 Icelandic ancestry individuals	NA	6p21.33		rs78593564-A	0.05083	8E-12		0.281426	[0.2-0.36] unit decrease	Illumina [7506463] (imputed)	N
609	chr6_mann_hap4	3249637	3249638	rs78593564	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL36A	5,364 Icelandic ancestry individuals	NA	6p21.33		rs78593564-A	0.05083	2E-64		0.72184	[0.64-0.81] unit decrease	Illumina [7506463] (imputed)	N
609	chr6_mann_hap4	3249637	3249638	rs78593564	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL21	5,363 Icelandic ancestry individuals	NA	6p21.33		rs78593564-A	0.05083	3E-50		0.636403	[0.55-0.72] unit decrease	Illumina [7506463] (imputed)	N
609	chr6_mann_hap4	3249637	3249638	rs78593564	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	6p21.33	HLA region	rs78593564-?	NR	3E-8	(EA)			Affymetrix, Illumina [10537485] (imputed)	N
609	chr6_mann_hap4	3249637	3249638	rs78593564	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	6p21.33	HLA region	rs78593564-?	NR	1E-8				Affymetrix, Illumina [10537485] (imputed)	N
609	chr6_mann_hap4	3250646	3250647	rs2293751	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	C2, CFB	rs2293751-A	NR	2E-15		0.0227001	[0.017-0.028] unit increase	Affymetrix [321169] (imputed)	N
609	chr6_mann_hap4	3250646	3250647	rs2293751	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.33	C2, C2-AS1, CFB, DXO, EHMT2, MIR1236, NELFE, NEU1, SKIV2L, SLC44A4, STK19, ZBTB12	rs2293751-A		3E-8		1.06	[1.04-1.08]	Affymetrix, Illumina [NR]	N
609	chr6_mann_hap4	3251570	3251571	rs497239	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ZAP70	5,359 Icelandic ancestry individuals	NA	6p21.33		rs497239-C	0.09998	3E-12		0.217124	[0.16-0.28] unit increase	Illumina [7506463] (imputed)	N
609	chr6_mann_hap4	3251570	3251571	rs497239	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein KLRC3	5,354 Icelandic ancestry individuals	NA	6p21.33		rs497239-C	0.09998	1E-32		0.360834	[0.3-0.42] unit increase	Illumina [7506463] (imputed)	N
609	chr6_mann_hap4	3251570	3251571	rs497239	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ENTPD3	5,332 Icelandic ancestry individuals	NA	6p21.33		rs497239-C	0.09998	3E-13		0.205425	[0.15-0.26] unit increase	Illumina [7506463] (imputed)	N
609	chr6_mann_hap4	3253757	3253758	rs547154	32843070	Winkler TW	2020-08-26	BMC Med Genomics	Genome-wide association meta-analysis for early age-related macular degeneration highlights novel loci and insights for advanced disease.	Early age-related macular degeneration	14,034 European ancestry cases, 91,214 European ancestry controls	NA	6p21.33	C2	rs547154-G	0.91	1E-18		1.24	[1.19-1.29]	Affymetrix, Illumina [11702853] (imputed)	N
609	chr6_mann_hap4	3256843	3256844	rs4151667	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	CFB	rs4151667-A	0.042	6E-53	(Complement factor B, CFB.4129.72.1)	0.91	[0.79-1.03] unit decrease	Affymetrix [10572788] (imputed)	N
609	chr6_mann_hap4	3256998	3256999	rs12614	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CFB	5,365 Icelandic ancestry individuals	NA	6p21.33		rs12614-T	0.07594	2E-11		0.239951	[0.17-0.31] unit decrease	Illumina [7506463] (imputed)	N
609	chr6_mann_hap4	3256998	3256999	rs12614	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	CFB	rs12614-T	0.087	7E-25	(Gremlin-1, GREM1.4449.67.3)	0.44	[0.36-0.52] unit increase	Affymetrix [10572788] (imputed)	N
609	chr6_mann_hap4	3256998	3256999	rs12614	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	CFB	rs12614-T	0.087	1E-283	(Neutrophil collagenase, MMP8.2954.56.2)	1.33	[1.25-1.41] unit increase	Affymetrix [10572788] (imputed)	N
609	chr6_mann_hap4	3256998	3256999	rs12614	25802187	Jiang DK	2015-04-28	Hepatology	Genetic variants in five novel loci including CFB and CD40 predispose to chronic hepatitis B.	Chronic hepatitis B infection	2,514 Chinese ancestry cases, 1,130 Chinese ancestry controls	6,600 Chinese ancestry cases, 8,127 Chinese ancestry controls	6p21.33	CFB	rs12614-T	0.92	1E-34		1.89	[1.69-2.08]	Illumina [3680900] (imputed)	N
609	chr6_mann_hap4	3256999	3257000	rs641153	32492067	Ruffieux H	2020-06-03	PLoS Comput Biol	A fully joint Bayesian quantitative trait locus mapping of human protein abundance in plasma.	Protein quantitative trait loci	394 European ancestry individuals	548 European ancestry individuals	6p21.33	NR	rs641153-?	NR	4E-12	(Factor B)			Illumina [~ 4000000] (imputed)	N
609	chr6_mann_hap4	3256999	3257000	rs641153	22705344	Sobrin L	2012-06-15	Ophthalmology	Heritability and genome-wide association study to assess genetic differences between advanced age-related macular degeneration subtypes.	Age-related macular degeneration (geographic atrophy)	819 European ancestry geographic atrophy cases, 4,134 European ancestry controls	NA	6p21.33	CFB	rs641153-?	0.899	2E-9		2.13	[1.69-2.7]	Affymetrix, Illumina [6036699] (imputed)	N
609	chr6_mann_hap4	3256999	3257000	rs641153	22705344	Sobrin L	2012-06-15	Ophthalmology	Heritability and genome-wide association study to assess genetic differences between advanced age-related macular degeneration subtypes.	Age-related macular degeneration (choroidal neovascularisation)	1,775 European ancestry choroidal neovascularization cases, 4,134 European ancestry controls	4,515 European and unknown ancestry choroidal neovascularization cases, 15,240 European and unknown ancestry controls	6p21.33	CFB	rs641153-?	0.899	1E-17		2.22	[1.85-2.63]	Affymetrix, Illumina [6036699] (imputed)	N
609	chr6_mann_hap4	3256999	3257000	rs641153	21665990	Yu Y	2011-06-10	Hum Mol Genet	Common variants near FRK/COL10A1 and VEGFA are associated with advanced age-related macular degeneration.	Age-related macular degeneration	2,594 European ancestry cases, 4,134 European ancestry controls	5,640 European ancestry cases, 52,174 European ancestry controls	6p21.33	CFB	rs641153-?	0.90	6E-31		1.85	[NR]	Affymetrix [6036699] (imputed)	N
609	chr6_mann_hap4	3256999	3257000	rs641153	20385826	Neale BM	2010-04-12	Proc Natl Acad Sci U S A	Genome-wide association study of advanced age-related macular degeneration identifies a role of the hepatic lipase gene (LIPC).	Age-related macular degeneration	979 cases, 1,709 controls	868 European ancestry cases, 410 European ancestry controls, 4,921 cases, 3,824 controls	6p21.33	CFB, C2	rs641153-?	NR	2E-20				Affymetrix [632932]	N
609	chr6_mann_hap4	3257754	3257755	rs1048709	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CFB	5,365 Icelandic ancestry individuals	NA	6p21.33		rs1048709-A	0.2856	2E-16		0.172241	[0.13-0.21] unit decrease	Illumina [7506463] (imputed)	N
609	chr6_mann_hap4	3257754	3257755	rs1048709	31375628	Tengvall K	2019-08-02	Proc Natl Acad Sci U S A	Molecular mimicry between Anoctamin 2 and Epstein-Barr virus nuclear antigen 1 associates with multiple sclerosis risk.	Anti-anoctamin 2 antibody levels	11,936 European ancestry individuals	NA	6p21.33	NR	rs1048709-A	NR	3E-7		0.054	[0.029-0.079] unit increase	Illumina [615763]	N
609	chr6_mann_hap4	3257963	3257964	rs4151669	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	DXO, C2, CFB, EHMT2, SLC44A4, EHMT2-AS1, ZBTB12, XXbac-BPG116M5.17, C2-AS1, NELFE, MIR1236, STK19, C4A	rs4151669-A	0.04112337	6E-28	(EA, Complement factor B)	1.17	[0.97-1.37] unit decrease	Affymetrix [509946]	N
609	chr6_mann_hap4	3259219	3259220	rs537160	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p21.33	NR	rs537160-G	0.6394	3E-7		0.0063	[0.0039-0.0087] unit increase	NR [7666894] (imputed)	N
609	chr6_mann_hap4	3259219	3259220	rs537160	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.33	XXbac-BPG116M5.17, CFB	rs537160-A	0.3352	9E-11		0.0478	[0.033-0.062] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
609	chr6_mann_hap4	3259526	3259527	rs45600936	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	6p21.33	CFB	rs45600936-T	0.00839800000000002	4E-10		0.07604781	[0.052-0.1] unit decrease	Affymetrix [93095623] (imputed)	N
609	chr6_mann_hap4	3259770	3259771	rs541862	29234017	Carayol J	2017-12-12	Nat Commun	Protein quantitative trait locus study in obesity during weight-loss identifies a leptin regulator.	Protein levels in obesity	494 European ancestry individuals	NA	6p21.33	NR	rs541862-?	NR	3E-11	(Factor B)	0.15	[0.1-0.2] unit increase	Illumina [4020654] (imputed)	N
609	chr6_mann_hap4	3259770	3259771	rs541862	22694956	Cipriani V	2012-06-13	Hum Mol Genet	Genome-wide association study of age-related macular degeneration identifies associated variants in the TNXB-FKBPL-NOTCH4 region of chromosome 6p21.3.	Age-related macular degeneration	893 European ancestry cases, 2,199 European ancestry controls	1,411 European ancestry cases, 1,431 European ancestry controls	6p21.33	CFB	rs541862-T	0.99	9E-17		1.89	[1.61-2.17]	Illumina [2272849] (imputed)	N
609	chr6_mann_hap4	3260359	3260360	rs4151657	24837172	Juyal G	2014-05-16	Gut	Genome-wide association scan in north Indians reveals three novel HLA-independent risk loci for ulcerative colitis.	Ulcerative colitis	603 North Indian ancestry cases, 622 North Indian ancestry controls	733 North Indian ancestry cases, 1,148 North Indian ancestry controls	6p21.33	CFB, BAT2, MSH5, HSPA1L, SLC44A4	rs4151657-G	0.29	5E-14		1.54	[1.38-1.73]	Illumina [480391]	N
609	chr6_mann_hap4	3261285	3261286	rs4151659	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	CFB	rs4151659-G	0.013	2E-18	(ER membrane protein complex subunit 4, EMC4.13516.46.3)	0.94	[0.72-1.16] unit decrease	Affymetrix [10572788] (imputed)	N
610	chr6_mann_hap4	3375563	3375564	rs204883	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SURF1	5,347 Icelandic ancestry individuals	NA	6p21.33		rs204883-A	0.3642	4E-14		0.138805	[0.1-0.17] unit decrease	Illumina [7506463] (imputed)	N
610	chr6_mann_hap4	3375563	3375564	rs204883	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	6p21.33	NR	rs204883-A	0.404749301755246	2E-9		0.005591649	[0.0038-0.0074] unit increase	NR [NR]	N
610	chr6_mann_hap4	3375563	3375564	rs204883	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	6p21.33	Intergenic	rs204883-A	0.414	1E-8	(MTAG)	0.0096	[0.0063-0.0129] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
610	chr6_mann_hap4	3375563	3375564	rs204883	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	6p21.33	Intergenic	rs204883-A	0.3876	1E-10	(MTAG)	0.0151	[0.01-0.02] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
610	chr6_mann_hap4	3375563	3375564	rs204883	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	6p21.33	Intergenic	rs204883-A	0.3876	7E-9		0.017	[0.011-0.023] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
610	chr6_mann_hap4	3376436	3376437	rs1265889	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Nephrotic syndrome	775 European ancestry cases, 475,255 European ancestry controls, 1,314 East Asian ancestry cases, 177,412 East Asian ancestry controls	NA	6p21.33		rs1265889-A	NR	2E-16		0.524	[0.4-0.65] unit increase	Affymetrix, Illumina [25844401] (imputed)	N
610	chr6_mann_hap4	3376764	3376765	rs3117189	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FTMT	5,365 Icelandic ancestry individuals	NA	6p21.33		rs3117189-A	0.2078	7E-41		0.308372	[0.26-0.35] unit decrease	Illumina [7506463] (imputed)	N
610	chr6_mann_hap4	3381386	3381387	rs1150755	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	6p21.33	TNXB	rs1150755-?	NR	6E-117		1.3	[1.19-1.41]	Illumina [at least 5000000] (imputed)	N
610	chr6_mann_hap4	3383440	3383441	rs204881	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p21.33	NR	rs204881-?	NR	5E-14		0.1561	[0.12-0.2] unit increase	Illumina [at least 560000] (imputed)	N
610	chr6_mann_hap4	3387687	3387688	rs2021783	25249183	Lu X	2014-09-23	Hum Mol Genet	Genome-wide association study in Chinese identifies novel loci for blood pressure and hypertension.	Systolic blood pressure	11,816 Han Chinese ancestry individuals	69,146 Han Chinese ancestry individuals	6p21.33	CYP21A2	rs2021783-C	0.79	3E-9		0.68	[0.44-0.92] unit increase	Affymetrix, Illumina [2485448] (imputed)	N
610	chr6_mann_hap4	3387687	3387688	rs2021783	25249183	Lu X	2014-09-23	Hum Mol Genet	Genome-wide association study in Chinese identifies novel loci for blood pressure and hypertension.	Hypertension	5,065 Han Chinese ancestry cases, 4,404 Han Chinese ancestry controls	29,799 Han Chinese ancestry cases, 39,347 Han Chinese ancestry controls	6p21.33	CYP21A2	rs2021783-C	0.79	4E-11				Affymetrix, Illumina [2485448] (imputed)	N
610	chr6_mann_hap4	3387687	3387688	rs2021783	25249183	Lu X	2014-09-23	Hum Mol Genet	Genome-wide association study in Chinese identifies novel loci for blood pressure and hypertension.	Diastolic blood pressure	11,816 Han Chinese ancestry individuals	69,146 Han Chinese ancestry individuals	6p21.33	CYP21A2	rs2021783-C	0.79	2E-12		0.49	[0.35-0.63] unit increase	Affymetrix, Illumina [2485448] (imputed)	N
610	chr6_mann_hap4	3390116	3390117	rs17201560	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		TNXB	rs17201560-?	NR	3E-10		1.80132	[NR] unit decrease	Affymetrix [NR] (imputed)	N
610	chr6_mann_hap4	3392270	3392271	rs12211410	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6p21.33		rs12211410-T	0.085	2E-13	(conditional-joint)	0.0185	[0.014-0.023] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
610	chr6_mann_hap4	3392914	3392915	rs185819	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.33		rs185819-T	0.533	5E-83				Affymetrix [10369434] (imputed)	N
610	chr6_mann_hap4	3392914	3392915	rs185819	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p21.33		rs185819-T	0.533	1E-58				Affymetrix [10369434] (imputed)	N
610	chr6_mann_hap4	3392914	3392915	rs185819	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Automobile speeding propensity	404,291 European ancestry individuals	NA	6p21.33	ATF6B	rs185819-T	0.5357	2E-12		0.01581973	[0.011-0.02] unit increase	Affymetrix [11514463] (imputed)	N
610	chr6_mann_hap4	3392914	3392915	rs185819	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Systolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	6p21.33	TNXB	rs185819-C	0.513	2E-13	(EA, initial)	0.534	[0.39-0.68] unit increase	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
610	chr6_mann_hap4	3392914	3392915	rs185819	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Systolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	6p21.33	TNXB	rs185819-C	0.513	1E-17		0.365	[0.28-0.45] unit increase	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
610	chr6_mann_hap4	3392914	3392915	rs185819	18391951	Gudbjartsson DF	2008-04-06	Nat Genet	Many sequence variants affecting diversity of adult human height.	Height	30,968 European ancestry individuals	8,541 European ancestry individuals	6p21.33	HLA class III	rs185819-T	0.52	3E-8		5.2	[3.44-6.96] % s.d. increase	Affymetrix, Illumina [up to 304226]	N
610	chr6_mann_hap4	3393605	3393606	rs1150754	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	TNXB	rs1150754-T	NR	9E-16		0.0330216	[0.025-0.041] unit decrease	Affymetrix [323858] (imputed)	N
610	chr6_mann_hap4	3393605	3393606	rs1150754	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	TNXB	rs1150754-T	NR	3E-14		0.0312441	[0.023-0.039] unit decrease	Affymetrix [127266] (imputed)	N
610	chr6_mann_hap4	3393605	3393606	rs1150754	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Myeloperoxidase levels	21,758 European ancestry individuals	9,173 individuals	6p21.33		rs1150754-T	0.15	7E-9		0.0636	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
610	chr6_mann_hap4	3393605	3393606	rs1150754	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	6p21.33	TNXB	rs1150754-C	NR	3E-12	(EA)	1.117	[1.09-1.15]	Illumina [6627481] (imputed)	N
610	chr6_mann_hap4	3393605	3393606	rs1150754	21408207	Chung SA	2011-03-03	PLoS Genet	Differential genetic associations for systemic lupus erythematosus based on anti-dsDNA autoantibody production.	Systemic lupus erythematosus	811 anti-dsDNA positive European ancestry cases, 906 anti-dsDNA negative European ancestry cases, 4,813 European ancestry controls	NA	6p21.33	TNXB	rs1150754-A	0.13	6E-29	(anti-dsDNA +)	2.21	[1.93-2.53]	Illumina [421318] (imputed)	N
610	chr6_mann_hap4	3402711	3402712	rs1150753	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	6p21.33	NR	rs1150753-G	0.09	6E-19		1.25	[1.19-1.31]	Illumina [8468885] (imputed)	N
610	chr6_mann_hap4	3402711	3402712	rs1150753	26316170	Demirci FY	2015-08-28	Arthritis Rheumatol	Identification of a New Susceptibility Locus for Systemic Lupus Erythematosus on Chromosome 12 in Individuals of European Ancestry.	Systemic lupus erythematosus	661 European ancestry cases, 487 European ancestry controls	4,467 European ancestry cases, 9,114 European ancestry controls	6p21.33	TNXB	rs1150753-?	NR	6E-9				Affymetrix [up to 700598]	N
610	chr6_mann_hap4	3403311	3403312	rs774873925	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	TNXB	rs774873925-CA	NR	3E-8		0.0192957	[0.012-0.026] unit increase	Affymetrix [323123] (imputed)	N
610	chr6_mann_hap4	3404182	3404183	rs57079996	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs57079996-?		1E-7		1.06	[1.04-1.09]	Illumina [7645193] (imputed)	N
610	chr6_mann_hap4	3404182	3404183	rs57079996	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs57079996-?		4E-8		1.77	[1.45-2.18]	Illumina [7645193] (imputed)	N
610	chr6_mann_hap4	3406738	3406739	rs41270458	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RACGAP1	5,360 Icelandic ancestry individuals	NA	6p21.33		rs41270458-A	0.02122	1E-45		0.927486	[0.8-1.06] unit decrease	Illumina [7506463] (imputed)	N
610	chr6_mann_hap4	3406738	3406739	rs41270458	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL18RAP	5,360 Icelandic ancestry individuals	NA	6p21.33		rs41270458-A	0.02122	2E-37		0.831007	[0.7-0.96] unit decrease	Illumina [7506463] (imputed)	N
610	chr6_mann_hap4	3407568	3407569	rs1150752	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p21.33	TNXB	rs1150752-C		7E-35		0.041	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
610	chr6_mann_hap4	3407568	3407569	rs1150752	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	6p21.33	NR	rs1150752-C	0.112114488054202	6E-13		0.01584757	[0.012-0.02] unit decrease	NR [NR]	N
611	chr6_mann_hap4	3409607	3409608	rs13199524	30552173	Aterido A	2018-12-14	Ann Rheum Dis	Genetic variation at the glycosaminoglycan metabolism pathway contributes to the risk of psoriatic arthritis but not psoriasis.	Psoriatic arthritis	744 Spanish ancestry cases, 1,454 Spanish ancestry controls	1,430 cases, 1,417 controls	6p21.33	NR	rs13199524-?	NR	6E-10		6.2	[NR] z-score increase	Illumina [1387382] (imputed)	N
611	chr6_mann_hap4	3411338	3411339	rs116298992	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TNXB	5,363 Icelandic ancestry individuals	NA	6p21.32		rs116298992-T	0.03624	6E-299		1.674	[1.59-1.76] unit decrease	Illumina [7506463] (imputed)	N
611	chr6_mann_hap4	3411338	3411339	rs116298992	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.32	NR	rs116298992-C	0.96390625	8E-63	(C2, 3186_2_2)	1.129958	[1-1.26] unit increase	Illumina [> 1000000] (imputed)	N
611	chr6_mann_hap4	3411338	3411339	rs116298992	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.32	NR	rs116298992-C	0.96390625	6E-141	(TNXB, 5698_60_3)	1.6212647	[1.5-1.74] unit increase	Illumina [> 1000000] (imputed)	N
611	chr6_mann_hap4	3411338	3411339	rs116298992	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.32	NR	rs116298992-C	0.96390625	5E-58	(ISG15, 14148_2_3)	1.0691733	[0.94-1.2] unit increase	Illumina [> 1000000] (imputed)	N
611	chr6_mann_hap4	3411338	3411339	rs116298992	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.32	NR	rs116298992-C	0.96390625	3E-16	(DEFB119, 13455_10_3)	0.5401916	[0.41-0.67] unit decrease	Illumina [> 1000000] (imputed)	N
611	chr6_mann_hap4	3411338	3411339	rs116298992	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.32	NR	rs116298992-C	0.96390625	3E-12	(MICA, 2730_58_2)	0.47020385	[0.34-0.6] unit increase	Illumina [> 1000000] (imputed)	N
611	chr6_mann_hap4	3411338	3411339	rs116298992	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.32	NR	rs116298992-C	0.96390625	2E-42	(CFB, 4129_72_1)	0.90520996	[0.78-1.03] unit increase	Illumina [> 1000000] (imputed)	N
611	chr6_mann_hap4	3411338	3411339	rs116298992	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.32	NR	rs116298992-C	0.96390625	1E-14	(FTMT, 8048_9_3)	0.51547647	[0.39-0.65] unit decrease	Illumina [> 1000000] (imputed)	N
611	chr6_mann_hap4	3452822	3452823	rs204999	23022100	Franceschini N	2012-09-26	Am J Hum Genet	Discovery and fine mapping of serum protein loci through transethnic meta-analysis.	Serum total protein level	Up to 25,539 European ancestry individuals, 10,168 Japanese ancestry individuals	NA		intergenic	rs204999-A	0.74	4E-11		0.0266	[0.019-0.034] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
611	chr6_mann_hap4	3452822	3452823	rs204999	23022100	Franceschini N	2012-09-26	Am J Hum Genet	Discovery and fine mapping of serum protein loci through transethnic meta-analysis.	Serum total protein level	Up to 25,539 European ancestry individuals, 10,168 Japanese ancestry individuals	NA		intergenic	rs204999-A	0.74	3E-9	(EA)	0.025	[0.017-0.033] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
611	chr6_mann_hap4	3452822	3452823	rs204999	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA		intergenic	rs204999-G	0.2643	9E-40		2.44	[NR]	Illumina [242824]	N
611	chr6_mann_hap4	3453357	3453358	rs77619009	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.32		rs77619009-A	0.944	4E-16				Affymetrix [10369434] (imputed)	N
611	chr6_mann_hap4	3453426	3453427	rs3130277	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	PRRT1	rs3130277-C	NR	2E-8		0.0208014	[0.014-0.028] unit decrease	Affymetrix [323858] (imputed)	N
611	chr6_mann_hap4	3453866	3453867	rs565981183	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs565981183-CA	0.876	1E-11		1.192	[1.14-1.24]	Illumina [11270530] (imputed)	N
611	chr6_mann_hap4	3455468	3455469	rs3130279	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL21	5,363 Icelandic ancestry individuals	NA	6p21.32		rs3130279-A	0.207	5E-14		0.174333	[0.13-0.22] unit increase	Illumina [7506463] (imputed)	N
611	chr6_mann_hap4	3457358	3457359	rs9296009	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	PRRT1	rs9296009-T	0.216	7E-13	(UDP-N-acetylhexosamine pyrophosphorylase, UAP1.13580.2.3)	0.21	[0.15-0.27] unit decrease	Affymetrix [10572788] (imputed)	N
611	chr6_mann_hap4	3457358	3457359	rs9296009	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	PRRT1	rs9296009-T	0.216	3E-37	(Rac GTPase-activating protein 1, RACGAP1.13587.10.3)	0.37	[0.31-0.43] unit decrease	Affymetrix [10572788] (imputed)	N
611	chr6_mann_hap4	3457358	3457359	rs9296009	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	PRRT1	rs9296009-T	0.196796488164359	4E-6	(IGP18)	0.1779	[0.1-0.25] unit decrease	Illumina [~ 2500000] (imputed)	N
611	chr6_mann_hap4	3457358	3457359	rs9296009	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	PRRT1	rs9296009-T	0.19676420855615	4E-6	(IGP25)	0.1773	[0.1-0.25] unit decrease	Illumina [~ 2500000] (imputed)	N
611	chr6_mann_hap4	3457358	3457359	rs9296009	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	PRRT1	rs9296009-T	0.196432337204109	4E-8	(IGP23)	0.2111	[0.14-0.29] unit decrease	Illumina [~ 2500000] (imputed)	N
611	chr6_mann_hap4	3458065	3458066	rs28732178	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	6p21.32	NR	rs28732178-?	NR	8E-11		6.496	NR z score decrease	Illumina [at least 830937] (imputed)	N
611	chr6_mann_hap4	3462741	3462742	rs3131283	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	PRRT1	rs3131283-T	NR	4E-16		0.0353753	[0.027-0.044] unit increase	Affymetrix [323123] (imputed)	N
611	chr6_mann_hap4	3463558	3463559	rs1053924	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:0_[M+H]1+/Phosphatidylethanolamine_35:0_[M+H]1+/Phosphatidate_37:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	6p21.32		rs1053924-T	NR	3E-10		0.0786544	[0.054-0.103] unit decrease	Affymetrix [87696910] (imputed)	N
611	chr6_mann_hap4	3465315	3465316	rs3096696	25987655	Fernandez CA	2015-05-18	Blood	Genome-wide analysis links NFATC2 with asparaginase hypersensitivity.	Asparaginase hypersensitivity in acute lymphoblastic leukemia	3,126 child cases	182 child cases	6p21.32	PPT2	rs3096696-A		4E-6		1.478		Affymetrix [NR]	N
611	chr6_mann_hap4	3470303	3470304	rs3134950	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:0_[M+H]1+/Phosphatidylethanolamine_35:0_[M+H]1+/Phosphatidate_37:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	6p21.32		rs3134950-C	NR	3E-16		0.100569	[0.076-0.125] unit decrease	Affymetrix [87696910] (imputed)	N
611	chr6_mann_hap4	3470303	3470304	rs3134950	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	6p21.32	EGFL8	rs3134950-A	0.622	1E-8		0.01510972	[0.0099-0.0203] unit decrease	Affymetrix [~ 11515000] (imputed)	N
611	chr6_mann_hap4	3470303	3470304	rs3134950	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	6p21.32	PPT2	rs3134950-A	0.624	1E-10		0.0079	[0.0055-0.0103] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
611	chr6_mann_hap4	3470303	3470304	rs3134950	24823311	Guan W	2014-05-13	Circ Cardiovasc Genet	Genome-wide association study of plasma N6 polyunsaturated fatty acids within the cohorts for heart and aging research in genomic epidemiology consortium.	Plasma omega-6 polyunsaturated fatty acid levels (adrenic acid)	8,631 European ancestry individuals	NA	6p21.32	AGPAT1, PPT2	rs3134950-A	0.625	6E-6		0.01	[NR] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
611	chr6_mann_hap4	3470303	3470304	rs3134950	23362303	Wu JH	2013-01-29	Circ Cardiovasc Genet	Genome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortium.	Oleic acid (18:1n-9) levels	8,961 European ancestry individuals		6p21.32	EGFL8, AGPAT1, PPT2	rs3134950-A	NR	1E-6		0.0945	unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
611	chr6_mann_hap4	3471220	3471221	rs9267812	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.32		rs9267812-C	0.865	1E-35				Affymetrix [10369434] (imputed)	N
611	chr6_mann_hap4	3471220	3471221	rs9267812	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.32		rs9267812-C	0.865	2E-29				Affymetrix [10369434] (imputed)	N
611	chr6_mann_hap4	3471220	3471221	rs9267812	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.32		rs9267812-C	0.865	7E-20				Affymetrix [10369434] (imputed)	N
611	chr6_mann_hap4	3471220	3471221	rs9267812	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.32		rs9267812-C	0.865	9E-41				Affymetrix [10369434] (imputed)	N
611	chr6_mann_hap4	3471220	3471221	rs9267812	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p21.32		rs9267812-C	0.865	8E-22				Affymetrix [10369434] (imputed)	N
611	chr6_mann_hap4	3471220	3471221	rs9267812	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	6p21.32	PPT2	rs9267812-T	0.135386	2E-6		0.021886	[0.013-0.031] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
611	chr6_mann_hap4	3471220	3471221	rs9267812	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	6p21.32	PPT2	rs9267812-T	0.132705	3E-9		0.022969	[0.015-0.031] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
611	chr6_mann_hap4	3471220	3471221	rs9267812	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs9267812-T	0.136	1E-30	(Rac GTPase-activating protein 1, RACGAP1.13587.10.3)	0.4	[0.32-0.48] unit decrease	Affymetrix [10572788] (imputed)	N
611	chr6_mann_hap4	3477336	3477337	rs3096697	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.32	EGFL8	rs3096697-T	0.2054	1E-41		2.58	[NR]	Illumina [242824]	N
611	chr6_mann_hap4	3479370	3479371	rs1061808	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for LDL particles	115,082 European ancestry individuals	NA	6p21.32		rs1061808-T	0.3719	6E-9		0.0242981	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
611	chr6_mann_hap4	3479370	3479371	rs1061808	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	6p21.32		rs1061808-G	NR	1E-22		0.0181	[0.015-0.022] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
611	chr6_mann_hap4	3479370	3479371	rs1061808	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:0_[M+H]1+/Phosphatidylethanolamine_35:0_[M+H]1+/Phosphatidate_37:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	6p21.32		rs1061808-T	NR	1E-15		0.0960224	[0.072-0.12] unit decrease	Affymetrix [87696910] (imputed)	N
611	chr6_mann_hap4	3479370	3479371	rs1061808	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	6p21.32	AGPAT1	rs1061808-T	0.3698	1E-23		0.25	[0.2-0.3] mmHg decrease	Affymetrix [NR] (imputed)	N
611	chr6_mann_hap4	3479370	3479371	rs1061808	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs1061808-G	0.631	8E-37	(Tenascin-X, TNXB.5698.60.3)	0.32	[0.28-0.36] unit increase	Affymetrix [10572788] (imputed)	N
611	chr6_mann_hap4	3479370	3479371	rs1061808	22359512	Demirkan A	2012-02-16	PLoS Genet	Genome-wide association study identifies novel loci associated with circulating phospho- and sphingolipid concentrations.	Phospholipid levels (plasma)	4,034 European ancestry individuals	NA	6p21.32	AGPAT1	rs1061808-?	NR	8E-10	(proportions)	0.9	[NR] % increase	Illumina [NR] (imputed)	N
611	chr6_mann_hap4	3481368	3481369	rs3130283	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Angina pectoris	30,025 European ancestry cases, 440,906 European ancestry controls, 14,007 East Asian ancestry cases, 145,158 East Asian ancestry controls	NA	6p21.32		rs3130283-C	NR	3E-11		0.0776	[0.055-0.101] unit increase	Affymetrix, Illumina [25842036] (imputed)	N
611	chr6_mann_hap4	3481368	3481369	rs3130283	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	6p21.32	NR	rs3130283-C	0.8533	6E-27		0.0617	[0.051-0.073] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
611	chr6_mann_hap4	3481440	3481441	rs114004994	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IFNAR1	5,357 Icelandic ancestry individuals	NA	6p21.32		rs114004994-C	0.04783	3E-14		0.323386	[0.24-0.41] unit decrease	Illumina [7506463] (imputed)	N
611	chr6_mann_hap4	3481440	3481441	rs114004994	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA	6p21.32	PPT2-EGFL8	rs114004994-?	NR	5E-9		1.80656	[NR] unit decrease	Affymetrix [NR] (imputed)	N
611	chr6_mann_hap4	3483310	3483311	rs3130284	25987655	Fernandez CA	2015-05-18	Blood	Genome-wide analysis links NFATC2 with asparaginase hypersensitivity.	Asparaginase hypersensitivity in acute lymphoblastic leukemia	3,126 child cases	182 child cases	6p21.32	AGPAT1	rs3130284-C	NR	7E-6		1.464		Affymetrix [NR]	N
611	chr6_mann_hap4	3488530	3488531	rs2269423	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:0_[M+H]1+/Phosphatidylethanolamine_35:0_[M+H]1+/Phosphatidate_37:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	6p21.32		rs2269423-A	NR	9E-17		0.0987433	[0.075-0.122] unit decrease	Affymetrix [87696910] (imputed)	N
611	chr6_mann_hap4	3489315	3489316	rs3134945	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.32	RNF5	rs3134945-T	0.2049	2E-40		2.54	[NR]	Illumina [242824]	N
611	chr6_mann_hap4	3489872	3489874	rs41315238	34782693	Yamada M	2021-11-15	Commun Biol	Genetic loci for lung function in Japanese adults with adjustment for exhaled nitric oxide levels as airway inflammation indicator.	Lung function (FEV1/FVC)	14,061 Japanese ancestry individuals	5,661 Japanese ancestry individuals	6p21.32		rs41315238-A	0.1513	7E-24		0.1542	[0.12-0.18] unit increase	Affymetrix [8587571] (imputed)	N
611	chr6_mann_hap4	3489980	3489981	rs41268928	26083729	Maruthur NM	2015-06-17	PLoS One	Genetics of Plasma Soluble Receptor for Advanced Glycation End-Products and Cardiovascular Outcomes in a Community-based Population: Results from the Atherosclerosis Risk in Communities Study.	Advanced glycation end-product levels	581 Black individuals, 1,737 European ancestry individuals	NA	6p21.32	RNF5, NOTCH4, AGER	rs41268928-C	0.04	3E-16	(EA)	0.69	unit decrease	Affymetrix [up to 9100000] (imputed)	N
611	chr6_mann_hap4	3490584	3490585	rs3134943	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.32	RNF5	rs3134943-T	NR	2E-7	(women)	0.0338184	[0.021-0.047] unit increase	Illumina [13520550] (imputed)	N
611	chr6_mann_hap4	3490854	3490855	rs1062070	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Waist circumference variance	347,158 European ancestry individuals	NA	6p21.32	RNF5	rs1062070-?	NR	7E-12				NR [5554549] (imputed)	N
611	chr6_mann_hap4	3490854	3490855	rs1062070	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Waist circumference	347,158 European ancestry individuals	NA	6p21.32	RNF5	rs1062070-?	NR	6E-10				NR [5554549] (imputed)	N
611	chr6_mann_hap4	3492083	3492084	rs2071288	26083729	Maruthur NM	2015-06-17	PLoS One	Genetics of Plasma Soluble Receptor for Advanced Glycation End-Products and Cardiovascular Outcomes in a Community-based Population: Results from the Atherosclerosis Risk in Communities Study.	Advanced glycation end-product levels	581 Black individuals, 1,737 European ancestry individuals	NA	6p21.32	AGER, RNF5, NOTCH4	rs2071288-T	0.1	2E-8	(Blacks)	0.56	unit decrease	Affymetrix [up to 9100000] (imputed)	N
611	chr6_mann_hap4	3492624	3492625	rs9391855	33766948	Zhu Z	2021-03-25	Eur Respir J	A large-scale genome-wide association analysis of lung function in the Chinese population identifies novel loci and highlights shared genetic etiology with obesity.	Lung function (FEV1/FVC)	100,285 Chinese ancestry individuals	NA	6p21.32		rs9391855-C	0.78	2E-22		0.053	unit decrease	Affymetrix [NR] (imputed)	N
611	chr6_mann_hap4	3494266	3494267	rs2070600	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein AGER	5,368 Icelandic ancestry individuals	NA	6p21.32		rs2070600-T	0.04774	1E-31		0.516865	[0.43-0.6] unit decrease	Illumina [7506463] (imputed)	N
611	chr6_mann_hap4	3494266	3494267	rs2070600	33909500	Moll M	2021-04-28	Am J Physiol Lung Cell Mol Physiol	A Systematic Analysis of Protein-altering Exonic Variants in Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease	up to 31,465 European ancestry cases, up to 203,688 European ancestry controls, up to 1,413 African ancestry cases, up to 6,080 African ancestry controls, up to 287 East Asian ancestry cases, up to 7,484 East Asian ancestry controls, up to 61 Hispanic cases, up to 613 Hispanic controls	NA	6p21.32	AGER	rs2070600-C	0.94	1E-16		1.19	[1.15 -1.25]	Illumina [at least 109036]	N
611	chr6_mann_hap4	3494266	3494267	rs2070600	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs2070600-T	NR	9E-12		1.2804097	[1.19-1.38]	Affymetrix [7846216] (imputed)	N
611	chr6_mann_hap4	3494266	3494267	rs2070600	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	6p21.32	AGER	rs2070600-C	0.94	1E-17		1.21	[1.15-1.26]	Affymetrix, Illumina [6224355] (imputed)	N
611	chr6_mann_hap4	3494266	3494267	rs2070600	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	6p21.32	AGER	rs2070600-T	0.0629	2E-45		0.073	[0.063-0.083] unit increase	Affymetrix [19819130] (imputed)	N
611	chr6_mann_hap4	3494266	3494267	rs2070600	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	6p21.32	AGER	rs2070600-T	0.0629	8E-15		0.0379	[0.028-0.048] unit decrease	Affymetrix [19819130] (imputed)	N
611	chr6_mann_hap4	3494266	3494267	rs2070600	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	6p21.32	AGER	rs2070600-T	0.0629	3E-189		0.1452	[0.14-0.15] unit increase	Affymetrix [19819130] (imputed)	N
611	chr6_mann_hap4	3494266	3494267	rs2070600	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	6p21.32	AGER	rs2070600-T	0.0629	5E-11		0.0318	[0.022-0.041] unit increase	Affymetrix [19819130] (imputed)	N
611	chr6_mann_hap4	3494266	3494267	rs2070600	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	AGER	rs2070600-T	0.067	4E-33	(Advanced glycosylation end product-specific receptor, soluble, AGER.4125.52.2)	0.57	[0.47-0.67] unit decrease	Affymetrix [10572788] (imputed)	N
611	chr6_mann_hap4	3494266	3494267	rs2070600	28369058	Folkersen L	2017-04-03	PLoS Genet	Mapping of 79 loci for 83 plasma protein biomarkers in cardiovascular disease.	Blood protein levels in cardiovascular risk	3,394 European ancestry individuals	2,639 individuals	6p21.32	AGER	rs2070600-T	0.04	5E-12		0.37	unit decrease	Illumina [5270624] (imputed)	N
611	chr6_mann_hap4	3494266	3494267	rs2070600	28166215	Hobbs BD	2017-02-06	Nat Genet	Genetic loci associated with chronic obstructive pulmonary disease overlap with loci for lung function and pulmonary fibrosis.	Chronic obstructive pulmonary disease	11,157 European ancestry cases, 36,699 European ancestry controls, 1,142 African American cases, 2,380 African American controls, 199 Korean ancestry cases, 6,741 Korean ancestry controls, 52 Hispanic cases, 548 Hispanic controls.	12,051 European ancestry cases, 11,111 European ancestry controls, 153 Korean ancestry cases, 205 Korean ancestry controls.	6p21.32	AGER	rs2070600-C	0.95	6E-10		1.24	[1.16-1.32]	Affymetrix, Illumina [NR] (imputed)	N
611	chr6_mann_hap4	3494266	3494267	rs2070600	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FEV1/FVC)	48,943 European ancestry individuals	57,176 European ancestry individuals, 38,199 individuals.	6p21.32	AGER	rs2070600-T	0.0634	3E-25		0.14	[0.11-0.17] unit increase	Affymetrix [27624732] (imputed)	N
611	chr6_mann_hap4	3494266	3494267	rs2070600	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	6p21.32	NR	rs2070600-?		3E-22	(AGER)	0.7091	[NR] unit decrease	Illumina [NR]	N
611	chr6_mann_hap4	3494266	3494267	rs2070600	26030696	Cho MH	2015-06-01	Am J Respir Crit Care Med	A Genome-Wide Association Study of Emphysema and Airway Quantitative Imaging Phenotypes.	Percentage gas trapping	3,243 European ancestry chronic obstructive pulmonary disease cases, 901 African American chronic obstructive pulmonary disease cases,  3,062 European ancestry controls, 2,132 African American controls	NA	6p21.32	AGER	rs2070600-T	NR	4E-9	(All)	0.23	[0.15-0.31] unit decrease	Illumina [6900000] (imputed)	N
611	chr6_mann_hap4	3494266	3494267	rs2070600	26030696	Cho MH	2015-06-01	Am J Respir Crit Care Med	A Genome-Wide Association Study of Emphysema and Airway Quantitative Imaging Phenotypes.	Emphysema imaging phenotypes	5,385 European ancestry chronic obstructive pulmonary disease cases, 901 African American chronic obstructive pulmonary disease cases, 3,613 European ancestry controls, 2,132 African American controls	NA	6p21.32	AGER	rs2070600-T	NR	5E-9	(%LAA-950, All)	0.14	[-0.07560-0.35560] unit decrease	Illumina [7600000] (imputed)	N
611	chr6_mann_hap4	3494266	3494267	rs2070600	23284291	Hancock DB	2012-12-20	PLoS Genet	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (smoking interaction)	50,047 European ancestry individuals	NA	6p21.32	AGER	rs2070600-?	NR	1E-21	(FEV1/FVC, Pack-years)			NR [~ 2500000] (imputed)	N
611	chr6_mann_hap4	3494266	3494267	rs2070600	20010835	Hancock DB	2009-12-13	Nat Genet	Meta-analyses of genome-wide association studies identify multiple loci associated with pulmonary function.	Pulmonary function	20,890 European ancestry individuals	16,178 European ancestry individuals	6p21.32	AGER, PPT2	rs2070600-T	0.04	3E-14	(FEV1/FVC)	1.0	[NR] % increase	Affymetrix, Illumina [2534500] (imputed)	N
611	chr6_mann_hap4	3494266	3494267	rs2070600	20010834	Repapi E	2009-12-13	Nat Genet	Genome-wide association study identifies five loci associated with lung function.	Pulmonary function	20,288 European ancestry individuals	up to 54,276 European ancestry individuals	6p21.32	AGER	rs2070600-T	0.06	3E-15	(FEV1/FVC)	0.088	[0.066-0.110] s.d. increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
611	chr6_mann_hap4	3495210	3495211	rs1800624	33766948	Zhu Z	2021-03-25	Eur Respir J	A large-scale genome-wide association analysis of lung function in the Chinese population identifies novel loci and highlights shared genetic etiology with obesity.	Lung function (FEV1/FVC)	100,285 Chinese ancestry individuals	NA	6p21.32		rs1800624-A	0.87	3E-9		0.039	unit increase	Affymetrix [NR] (imputed)	N
611	chr6_mann_hap4	3495265	3495266	rs1800625	26876947	Saito T	2016-02-11	Biol Psychiatry	Pharmacogenomic Study of Clozapine-Induced Agranulocytosis/Granulocytopenia in a Japanese Population.	Clozapine-induced agranulocytosis/granulocytopenia in treatment-resistant schizophrenia	50 Japanese ancestry cases, 2905 Japanese ancestry controls	NA	6p21.32	ZDHHC20P2, HCG25, HCG26, LST1, MICA, FKBPL, AGPAT1, PBX2, NOTCH4, C6orf10, MHC, HLA-X, HCP5, MSH5, C6orf26	rs1800625-G	0.084	3E-9		3.78	[3.34-4.22]	Illumina [522694]	N
611	chr6_mann_hap4	3495265	3495266	rs1800625	26546620	Xu CF	2015-11-06	Clin Cancer Res	HLA-B*57:01 Confers Susceptibility to Pazopanib-Associated Liver Injury in Patients with Cancer.	Response to Pazopanib in cancer (hepatotoxicity)	Up to 844 European ancestry cases, up to 325 Asian ancestry cases, up to 19 cases	Up to 811 European ancestry cases, up to 114 Asian ancestry cases, up to 77 cases	6p21.32	AGER	rs1800625-G	NR	8E-9	(Time to ALT>3 x upper limit of normal event)	1.8	[1.5-2.1]	Illumina [6736730] (imputed)	N
611	chr6_mann_hap4	3496161	3496162	rs201026476	32488134	Auckland K	2020-06-02	Sci Rep	The Human Leukocyte Antigen Locus and Rheumatic Heart Disease Susceptibility in South Asians and Europeans.	Rheumatic heart disease	510 Northern Indian cases, 344 Northern Indian controls, 162 Fijian Indian cases, 147 Fijian Indian controls	150 European ancestry cases, 1,309 European ancestry controls	6p21.32	PBX2	rs201026476-?		3E-10		1.81	[1.51-2.18]	Illumina [6925553] (imputed)	N
611	chr6_mann_hap4	3496226	3496227	rs169504	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	PBX2, XXbac-BPG300A18.13	rs169504-A	NR	4E-9		0.0216001	[0.014-0.029] unit decrease	Affymetrix [319769] (imputed)	N
611	chr6_mann_hap4	3496226	3496227	rs169504	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	PBX2, XXbac-BPG300A18.13	rs169504-A	NR	3E-12		0.0279533	[0.02-0.036] unit increase	Affymetrix [323123] (imputed)	N
611	chr6_mann_hap4	3496226	3496227	rs169504	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Anxiety	at least 23,606 European ancestry cases, at least 113,351 European ancestry controls	624,615 European ancestry cases, 1,310,854 European ancestry controls	6p21.32	PBX2, XXbac, BPG300A18.13	rs169504-C	0.1481	5E-28		0.03352553	[0.027-0.04] unit increase	NR [9417325] (imputed)	N
611	chr6_mann_hap4	3496226	3496227	rs169504	29899525	Klimentidis YC	2018-06-13	Int J Obes (Lond)	Genome-wide association study of habitual physical activity in over 377,000 UK Biobank participants identifies multiple variants including CADM2 and APOE.	Moderate to vigorous physical activity levels	377,234 European ancestry individuals	NA	6p21.32	PBX2	rs169504-C	0.81	5E-11	(model 2)	0.018	unit increase	Affymetrix [11800000] (imputed)	N
611	chr6_mann_hap4	3496226	3496227	rs169504	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p21.32	NR	rs169504-?	NR	5E-9		0.0694	[0.046-0.093] unit increase	Illumina [at least 560000] (imputed)	N
611	chr6_mann_hap4	3497105	3497106	rs204995	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	6p21.32	NR	rs204995-A	0.736056	3E-13		0.0272612	[0.02-0.034] unit increase	Affymetrix [16577424] (imputed)	N
611	chr6_mann_hap4	3497818	3497819	rs204994	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RACGAP1	5,360 Icelandic ancestry individuals	NA	6p21.32		rs204994-T	0.1627	4E-63		0.423554	[0.37-0.47] unit increase	Illumina [7506463] (imputed)	N
611	chr6_mann_hap4	3498401	3498402	rs204993	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Receptor for advanced glycosylation end products levels	21,758 European ancestry individuals	9,173 individuals	6p21.32		rs204993-A	0.74	1E-48		0.1449	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
611	chr6_mann_hap4	3498401	3498402	rs204993	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 142,336 Japanese ancestry controls	NA	6p21.32	PBX2	rs204993-?	NR	6E-9		0.0600478	[0.04-0.08] unit decrease	Illumina [19707525] (imputed)	N
611	chr6_mann_hap4	3498401	3498402	rs204993	21804548	Hirota T	2011-07-31	Nat Genet	Genome-wide association study identifies three new susceptibility loci for adult asthma in the Japanese population.	Asthma	1,532 Japanese ancestry cases, 3,304 Japanese ancestry controls	5,639 Japanese ancestry cases, 24,608 Japanese ancestry controls	6p21.32	PBX2	rs204993-A	0.58	2E-15		1.17	[1.12-1.21]	Illumina [458847]	N
611	chr6_mann_hap4	3500184	3500185	rs2856437	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cervical cancer	6,563 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs2856437-A	0.063203	1E-15		1.3032712	NR	Affymetrix [7846216] (imputed)	N
611	chr6_mann_hap4	3501139	3501140	rs176095	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Atopic dermatitis	2,079 European ancestry cases, 3,867 European ancestry controls	NA	6p21.32	GPSM3	rs176095-G	NR	3E-7		1.3020833	[1.18-1.44]	Affymetrix, Illumina, Perlegen [up to 5493100] (imputed)	N
611	chr6_mann_hap4	3501139	3501140	rs176095	23042114	Hirota T	2012-10-07	Nat Genet	Genome-wide association study identifies eight new susceptibility loci for atopic dermatitis in the Japanese population.	Atopic dermatitis	1,472 Japanese ancestry cases, 7,971 Japanese ancestry controls	1,856 Japanese ancestry cases, 7,021 Japanese ancestry controls	6p21.32	GPSM3	rs176095-T	0.81	8E-20		1.4	[1.30-1.51]	Illumina [606164]	N
611	chr6_mann_hap4	3502776	3502777	rs3134605	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	GPSM3	rs3134605-C	NR	8E-9		0.0195758	[0.013-0.026] unit decrease	Affymetrix [319769] (imputed)	N
611	chr6_mann_hap4	3502776	3502777	rs3134605	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	GPSM3	rs3134605-C	NR	3E-8		0.0188346	[0.012-0.025] unit decrease	Affymetrix [319769] (imputed)	N
611	chr6_mann_hap4	3502776	3502777	rs3134605	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	GPSM3	rs3134605-C	NR	1E-8		0.0196385	[0.013-0.026] unit decrease	Affymetrix [321169] (imputed)	N
611	chr6_mann_hap4	3502776	3502777	rs3134605	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	6p21.32	GPSM3	rs3134605-T	0.7974	7E-17		0.0033	[0.0025-0.0041] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
611	chr6_mann_hap4	3502973	3502974	rs2269420	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Pancreatic cancer	768 White British ancestry cases, 264,559 White British ancestry controls	NA	6p21.32		rs2269420-?	NR	5E-6		550.195	[547.48-552.91]	NR [663102]	N
611	chr6_mann_hap4	3502973	3502974	rs2269420	28031287	Sasayama D	2016-11-26	Hum Mol Genet	Genome-wide quantitative trait loci mapping of the human cerebrospinal fluid proteome.	Cerebrospinal fluid biomarker levels	133 Japanese ancestry individuals.	NA	6p21.32	NR	rs2269420-?	NR	3E-9	(Complement factor B)			Illumina [514227]	N
611	chr6_mann_hap4	3504216	3504217	rs3132940	32534018	Liu X	2020-06-10	Brain Behav Immun	Genetic factors underlying the bidirectional relationship between autoimmune and mental disorders - findings from a Danish population-based study.	Autoimmune traits	1,383 Danish ancestry cases, 62,656 Danish ancestry controls	NA	6p21.32	NR	rs3132940-T	0.15	1E-15		0.62	[0.55-0.70]	NR [7721839] (imputed)	N
611	chr6_mann_hap4	3504216	3504217	rs3132940	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (non-Lofgren's syndrome without extrapulmonary manifestations)	451 Swedish ancestry cases, 2,086 Swedish ancestry controls	NA	6p21.32	GPSM3, NOTCH4, AGER, MICB, NFKBIL1, LTA, NCR3, AIF1, TNXB, CREBL1, FKBPL, PRRT1	rs3132940-A	0.203	7E-6		1.531	[1.282-1.829]	Illumina [118177]	N
611	chr6_mann_hap4	3504250	3504251	rs204990	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Scarlet fever	6,812 European ancestry cases, 113,837 European ancestry controls	NA	6p21.32	NR	rs204990-?	NR	7E-9		0.1298	[0.086-0.173] unit decrease	Illumina [at least 560000] (imputed)	N
611	chr6_mann_hap4	3506568	3506569	rs13215567	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6p21.32	GPSM3, NOTCH4	rs13215567-A	0.049	1E-6	(IGFBP-3 )	0.03	[NR] ng/mL increase	Illumina [899892]	N
611	chr6_mann_hap4	3508264	3508265	rs2071278	23028341	Yang X	2012-09-13	PLoS Genet	Genome-wide association study for serum complement C3 and C4 levels in healthy Chinese subjects.	Complement C3 and C4 levels	1,999 Han Chinese ancestry male individuals	1,496 Han Chinese ancestry male individuals	6p21.32	HLA-DRA	rs2071278-G	0.27	4E-72	(Serum level of C4)	0.13	[0.11-0.15] g/L decrease	Illumina [1940245] (imputed)	N
611	chr6_mann_hap4	3509204	3509205	rs8192575	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	NOTCH4	rs8192575-G	NR	3E-14		0.0413468	[0.031-0.052] unit increase	Affymetrix [319769] (imputed)	N
611	chr6_mann_hap4	3509204	3509205	rs8192575	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	NOTCH4	rs8192575-G	NR	1E-14		0.0418274	[0.031-0.052] unit increase	Affymetrix [319769] (imputed)	N
611	chr6_mann_hap4	3511596	3511597	rs3134942	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.32	NOTCH4, GPSM3	rs3134942-T	0.1076459	1E-16	(EA, MHC class I polypeptide-related sequence A)	0.5791	[0.44-0.71] unit increase	Affymetrix [509946]	N
611	chr6_mann_hap4	3513232	3513233	rs9267822	33941608	Khan A	2021-05-03	J Am Soc Nephrol	Medical Records-Based Genetic Studies of the Complement System.	Complement C4 levels	3,247 European ancestry individuals, 600 African ancestry individuals, 151 East Asian ancestry individuals	NA	6p21.32	C4	rs9267822-C	0.05	6E-7	(AA)	0.64	[0.40-0.87] unit increase	NR [NR] (imputed)	N
611	chr6_mann_hap4	3513232	3513233	rs9267822	33941608	Khan A	2021-05-03	J Am Soc Nephrol	Medical Records-Based Genetic Studies of the Complement System.	Complement C4 levels	3,247 European ancestry individuals, 600 African ancestry individuals, 151 East Asian ancestry individuals	NA	6p21.32	C4	rs9267822-C	0.02	6E-17		0.65	[0.51-0.78] unit increase	NR [NR] (imputed)	N
611	chr6_mann_hap4	3513232	3513233	rs9267822	33941608	Khan A	2021-05-03	J Am Soc Nephrol	Medical Records-Based Genetic Studies of the Complement System.	Complement C4 levels	3,247 European ancestry individuals, 600 African ancestry individuals, 151 East Asian ancestry individuals	NA	6p21.32	C4	rs9267822-C	0.01	7E-9	(EA)	0.61	[0.41-0.80] unit increase	NR [NR] (imputed)	N
611	chr6_mann_hap4	3513900	3513901	rs3132935	23894747	Aberg KA	2013-02-01	JAMA Psychiatry	A comprehensive family-based replication study of schizophrenia genes.	Schizophrenia	11,185 European ancestry cases, 10,768 European ancestry controls	1,262 African American ancestry individuals, 2,740 European ancestry individuals, 2,296 Asian ancestry individuals	6p21.32	NOTCH4	rs3132935-?	0.82	5E-7	(EA)	1.25	[NR]	NR [1085772] (imputed)	N
611	chr6_mann_hap4	3513900	3513901	rs3132935	23894747	Aberg KA	2013-02-01	JAMA Psychiatry	A comprehensive family-based replication study of schizophrenia genes.	Schizophrenia	11,185 European ancestry cases, 10,768 European ancestry controls	1,262 African American ancestry individuals, 2,740 European ancestry individuals, 2,296 Asian ancestry individuals	6p21.32	NOTCH4	rs3132935-?	0.82	3E-7		1.25	[NR]	NR [1085772] (imputed)	N
611	chr6_mann_hap4	3514508	3514509	rs2071277	22694956	Cipriani V	2012-06-13	Hum Mol Genet	Genome-wide association study of age-related macular degeneration identifies associated variants in the TNXB-FKBPL-NOTCH4 region of chromosome 6p21.3.	Age-related macular degeneration	893 European ancestry cases, 2,199 European ancestry controls	1,411 European ancestry cases, 1,431 European ancestry controls	6p21.32	NOTCH4	rs2071277-C	0.219	2E-11		1.3	[1.20-1.41]	Illumina [2272849] (imputed)	N
611	chr6_mann_hap4	3515818	3515819	rs3131296	19571808	Stefansson H	2009-07-01	Nature	Common variants conferring risk of schizophrenia.	Schizophrenia	2,663 European ancestry cases, 13,498 European ancestry controls	10,282 European ancestry cases, 21,093 European ancestry controls	6p21.32	MHC, NOTCH4	rs3131296-G	0.87	2E-10		1.19	[NR]	Illumina [314868]	N
611	chr6_mann_hap4	3516063	3516064	rs9267823	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6p21.32	NOTCH4	rs9267823-C	0.252	3E-12		0.018297182	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
611	chr6_mann_hap4	3516426	3516427	rs138753323	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.32		rs138753323-C	0.02776400000000001	7E-13		1.0961492	[1.06-1.12]	Affymetrix, Illumina [9851866] (imputed)	N
611	chr6_mann_hap4	3516875	3516876	rs2849017	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	6p21.32	NOTCH4	rs2849017-G	0.0713240000000001	2E-10		0.027348002	[0.019-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
611	chr6_mann_hap4	3516875	3516876	rs2849017	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	6p21.32	NOTCH4	rs2849017-G	0.071334	5E-15		0.033472747	[0.025-0.042] unit decrease	Affymetrix [93095623] (imputed)	N
611	chr6_mann_hap4	3517784	3517785	rs3130290	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of saturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	6p21.32		rs3130290-T	0.396568	2E-14		0.0317416	[0.024-0.04] unit decrease	NR [11722792] (imputed)	N
611	chr6_mann_hap4	3519036	3519037	rs206017	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:0_[M+H]1+/Phosphatidylethanolamine_35:0_[M+H]1+/Phosphatidate_37:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	6p21.32		rs206017-G	NR	2E-10		0.0746241	[0.052-0.098] unit decrease	Affymetrix [87696910] (imputed)	N
611	chr6_mann_hap4	3519607	3519608	rs3132947	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Hip circumference variance	346,781 European ancestry individuals	NA	6p21.32	GPSM3	rs3132947-?	NR	5E-11				NR [5554549] (imputed)	N
611	chr6_mann_hap4	3519607	3519608	rs3132947	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Hip circumference	346,781 European ancestry individuals	NA	6p21.32	GPSM3	rs3132947-?	NR	3E-24				NR [5554549] (imputed)	N
611	chr6_mann_hap4	3519607	3519608	rs3132947	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Body mass index variance	346,393 European ancestry individuals	NA	6p21.32	GPSM3	rs3132947-?	NR	2E-13				NR [5554549] (imputed)	N
611	chr6_mann_hap4	3519607	3519608	rs3132947	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Body mass index	346,393 European ancestry individuals	NA	6p21.32	GPSM3	rs3132947-?	NR	9E-15				NR [5554549] (imputed)	N
611	chr6_mann_hap4	3522535	3522536	rs16869834	33941608	Khan A	2021-05-03	J Am Soc Nephrol	Medical Records-Based Genetic Studies of the Complement System.	Complement C4 levels	3,247 European ancestry individuals, 600 African ancestry individuals, 151 East Asian ancestry individuals	NA	6p21.32	C4	rs16869834-A	0.05	8E-20		0.44	[0.36-0.51] unit increase	NR [NR] (imputed)	N
611	chr6_mann_hap4	3522535	3522536	rs16869834	33941608	Khan A	2021-05-03	J Am Soc Nephrol	Medical Records-Based Genetic Studies of the Complement System.	Complement C4 levels	3,247 European ancestry individuals, 600 African ancestry individuals, 151 East Asian ancestry individuals	NA	6p21.32	C4	rs16869834-A	0.05	2E-18	(EA)	0.47	[0.37-0.56] unit increase	NR [NR] (imputed)	N
611	chr6_mann_hap4	3522535	3522536	rs16869834	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs16869834-G	0.047	5E-27	(Complement C4, C4A.C4B.4481.34.2)	0.62	[0.5-0.74] unit decrease	Affymetrix [10572788] (imputed)	N
611	chr6_mann_hap4	3522722	3522723	rs2071286	25030430	Zignego AL	2014-07-17	Genes Immun	Genome-wide association study of hepatitis C virus- and cryoglobulin-related vasculitis.	Mixed cryoglobulinemia vasculitis in chronic hepatitis C infection	356 European ancestry cases, 447 European ancestry controls	92 European ancestry cases, 179 European ancestry controls	6p21.32	NOTCH4	rs2071286-?	0.29	2E-8		2.15	[NR]	Illumina [899641]	N
611	chr6_mann_hap4	3522972	3522973	rs3131294	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	NOTCH4	rs3131294-A	NR	1E-10		0.025777	[0.018-0.034] unit increase	Affymetrix [321016] (imputed)	N
611	chr6_mann_hap4	3523067	3523068	rs206019	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	NOTCH4	rs206019-T	NR	5E-13		0.0300963	[0.022-0.038] unit increase	Affymetrix [319769] (imputed)	N
611	chr6_mann_hap4	3523067	3523068	rs206019	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	NOTCH4	rs206019-T	NR	2E-8		0.0236482	[0.015-0.032] unit increase	Affymetrix [321114] (imputed)	N
611	chr6_mann_hap4	3523067	3523068	rs206019	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	NOTCH4	rs206019-T	NR	2E-9		0.0253993	[0.017-0.034] unit increase	Affymetrix [321169] (imputed)	N
611	chr6_mann_hap4	3524008	3524009	rs206016	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	NOTCH4	rs206016-A	NR	2E-13		0.030587	[0.022-0.039] unit increase	Affymetrix [319769] (imputed)	N
611	chr6_mann_hap4	3524343	3524344	rs41270472	28334935	Raffield LM	2017-05-15	Hum Mol Genet	Genome-wide association study of iron traits and relation to diabetes in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL): potential genomic intersection of iron and glucose regulation?	Iron status biomarkers (iron levels)	12,580 Hispanic/Latino individuals	NA	6p21.32	NOTCH4	rs41270472-A	NR	8E-7		0.286	[0.17-0.4] unit decrease	Illumina [27700000] (imputed)	N
611	chr6_mann_hap4	3527196	3527197	rs404860	21804548	Hirota T	2011-07-31	Nat Genet	Genome-wide association study identifies three new susceptibility loci for adult asthma in the Japanese population.	Asthma	1,532 Japanese ancestry cases, 3,304 Japanese ancestry controls	5,639 Japanese ancestry cases, 24,608 Japanese ancestry controls	6p21.32	NOTCH4	rs404860-A	0.50	4E-23		1.21	[1.16-1.25]	Illumina [458847]	N
611	chr6_mann_hap4	3527555	3527556	rs3134798	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C4A;C4B	5,362 Icelandic ancestry individuals	NA	6p21.32		rs3134798-G	0.3666	1E-47		0.277923	[0.24-0.32] unit increase	Illumina [7506463] (imputed)	N
611	chr6_mann_hap4	3529095	3529096	rs438475	26503763	Song J	2015-10-27	Mol Psychiatry	Genome-wide association study identifies SESTD1 as a novel risk gene for lithium-responsive bipolar disorder.	Objective response to lithium treatment in bipolar disorder	323 European ancestry responder cases, 853 European ancestry non-responder cases	NA	6p21.32	NOTCH4	rs438475-A	0.12	2E-6		2.04	[NR]	Affymetrix, Illumina [> 8000000] (imputed)	N
611	chr6_mann_hap4	3529722	3529723	rs2256594	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (glucocorticoids)	13,102 East Asian ancestry cases, 165,624 East Asian ancestry controls	NA	6p21.32		rs2256594-G	0.381444507	1E-9		0.081218176	[0.055-0.107] unit decrease	Illumina [13429980] (imputed)	N
611	chr6_mann_hap4	3530487	3530488	rs8192589	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	NOTCH4	rs8192589-T	NR	7E-14		0.0321787	[0.024-0.041] unit increase	Affymetrix [323123] (imputed)	N
611	chr6_mann_hap4	3530572	3530573	rs431722	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Joint mobility (Beighton score)	64,143 European ancestry individuals	NA	6p21.32	NOTCH4	rs431722-?	NR	2E-12		0.08	[0.102-0.058] unit decrease	Illumina [12039492] (imputed)	N
611	chr6_mann_hap4	3530633	3530634	rs8192590	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	6p21.32	PRRC2A	rs8192590-C	0.8421	1E-8	(S1P d16:1)	0.1004	[0.066-0.135] unit increase	Illumina [~ 47000000] (imputed)	N
611	chr6_mann_hap4	3531233	3531234	rs422951	32771030	Tangtanatakul P	2020-08-08	Arthritis Res Ther	Meta-analysis of genome-wide association study identifies FBN2 as a novel locus associated with systemic lupus erythematosus in Thai population.	Systemic lupus erythematosus	487 Thai cases, 1,606 Thai controls	405 Thai cases, 1,590 Thai controls	6p21.32	NOTCH4	rs422951-G	0.36	7E-7		1.3345	[NR]	Illumina [421909] (imputed)	N
611	chr6_mann_hap4	3531233	3531234	rs422951	25802187	Jiang DK	2015-04-28	Hepatology	Genetic variants in five novel loci including CFB and CD40 predispose to chronic hepatitis B.	Chronic hepatitis B infection	2,514 Chinese ancestry cases, 1,130 Chinese ancestry controls	6,600 Chinese ancestry cases, 8,127 Chinese ancestry controls	6p21.32	NOTCH4	rs422951-G	0.81	5E-16		1.27	[1.20-1.35]	Illumina [3680900] (imputed)	N
611	chr6_mann_hap4	3531490	3531491	rs520692	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling worry	372,869 European ancestry individuals	NA	6p21.32	C4A	rs520692-T	0.289258	2E-10		6.342	unit decrease	NR [10847151] (imputed)	N
611	chr6_mann_hap4	3531673	3531674	rs8192585	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		NOTCH4	rs8192585-?	NR	3E-10	(male)	2.46406	[NR] unit decrease	Affymetrix [NR] (imputed)	N
611	chr6_mann_hap4	3531673	3531674	rs8192585	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		NOTCH4	rs8192585-?	NR	2E-15		2.03144	[NR] unit decrease	Affymetrix [NR] (imputed)	N
611	chr6_mann_hap4	3531882	3531883	rs415929	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.32		rs415929-T	0.711	3E-23				Affymetrix [10369434] (imputed)	N
611	chr6_mann_hap4	3531882	3531883	rs415929	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	6p21.32	C4A	rs415929-T	0.290043	4E-8		5.51	z score decrease	NR [10847151] (imputed)	N
611	chr6_mann_hap4	3532875	3532876	rs3132946	23583980	Fingerlin TE	2013-04-14	Nat Genet	Genome-wide association study identifies multiple susceptibility loci for pulmonary fibrosis.	Interstitial lung disease	1,161 European ancestry cases, 4,683 European ancestry controls	876 European ancestry cases, 1,890 European ancestry controls	6p21.32	NR	rs3132946-A	0.12	8E-6		1.38	[1.21-1.57]	Illumina [439828]	N
611	chr6_mann_hap4	3533253	3533254	rs443198	21779181	Gorlova O	2011-07-14	PLoS Genet	Identification of novel genetic markers associated with clinical phenotypes of systemic sclerosis through a genome-wide association strategy.	Systemic sclerosis	2,296 European ancestry cases, 5,172 European ancestry controls	3,175 European ancestry cases, 4,210 European ancestry controls	6p21.32	NOTCH4	rs443198-?	0.63	9E-21	(ACA positive)	1.82	[1.59-2.04]	Illumina [NR] (imputed)	N
611	chr6_mann_hap4	3533467	3533468	rs3134931	23620142	Reiner AP	2013-04-24	Hum Mol Genet	Genome-wide and gene-centric analyses of circulating myeloperoxidase levels in the charge and care consortia.	Circulating myeloperoxidase levels (serum)	9,305 European ancestry individuals		6p21.32	HLA, NOTCH4, C2	rs3134931-T	0.73	1E-8		0.05	[0.030-0.070] unit decrease	Affymetrix, Illumina [2397181]	N
611	chr6_mann_hap4	3533888	3533889	rs434841	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	NOTCH4	rs434841-A	NR	4E-8		0.0169017	[0.011-0.023] unit decrease	Affymetrix [319769] (imputed)	N
611	chr6_mann_hap4	3534010	3534011	rs149361718	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.32	NR	rs149361718-A	0.01394	1E-10	(KRT10)	0.7834	NR unit increase	Illumina [1671387] (imputed)	N
611	chr6_mann_hap4	3534186	3534187	rs3830041	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	150,068 East Asian ancestry individuals	NA	6p21.32		rs3830041-T	0.185228	9E-25		0.0457917	[0.037-0.055] unit increase	Illumina [13478956] (imputed)	N
611	chr6_mann_hap4	3534186	3534187	rs3830041	31826910	Lu Y	2019-12-11	Cancer Epidemiol Biomarkers Prev	Identification of novel loci and new risk variant in known loci for colorectal cancer risk in East Asians.	Colorectal cancer	23,572 East Asian ancestry cases, 48,700 East Asian ancestry controls	58,131 European ancestry cases, 67,347 European ancestry controls	6p21.32		rs3830041-T	0.14	4E-9	(East Asian)	1.15	[1.10-1.21]	Affymetrix, Illumina [up to 47000000] (imputed)	N
611	chr6_mann_hap4	3534186	3534187	rs3830041	30529582	Lu Y	2018-12-06	Gastroenterology	Large-scale Genome-wide Association Study of East Asians Identifies Loci Associated With Risk for Colorectal Cancer.	Colorectal cancer	22,775 East Asian ancestry cases, 47,731 East Asian ancestry controls	NA	6p21.32	NOTCH4	rs3830041-T	0.14	2E-8		1.16	[1.10-1.21]	Affymetrix, Illumina [up to 10700000] (imputed)	N
611	chr6_mann_hap4	3534304	3534305	rs375244	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p21.32	NOTCH4	rs375244-A	0.28	3E-6	(Turkish)	1.57	[1.30-1.90]	Illumina [up to 547389]	N
611	chr6_mann_hap4	3534574	3534575	rs367398	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p21.32		rs367398-G	0.694	2E-11				Affymetrix [10369434] (imputed)	N
611	chr6_mann_hap4	3535061	3535062	rs16869875	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	Systemic lupus erythematosus	1,639 East Asian ancestry cases, 2,410 East Asian ancestry controls	NA			rs16869875-T	NR	2E-16		0.4377	[0.33-0.54] unit increase	Illumina [NR] (imputed)	N
611	chr6_mann_hap4	3535175	3535176	rs3096702	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	6p21.32	NR	rs3096702-A	0.38	1E-11		1.06	[1.04-1.07]	Illumina [20370935] (imputed)	N
611	chr6_mann_hap4	3535175	3535176	rs3096702	23535732	Eeles RA	2013-04-01	Nat Genet	Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array.	Prostate cancer	11,085 European ancestry cases, 11,463 European ancestry controls	19,662 European ancestry cases, 19,715 European ancestry controls	6p21.32	CYP21A2, DOM3Z, FKBPL, HLA-DRB6, HCG23, LOC10029, ATF6B, LOC100293534, AGER, LOC100507547, MIR1236, PPT2, PPT2-EGF, HLA-DRA, PPT2-EGFL8, RNF5, RNF5P1, CFB, RDBP, TNXA, TNXB, HLA-DQB1, NOTCH4, SKIV2L, STK19, GPSM3, PBX2, LOC10050, EGFL8, AGPAT1, C2, C4A, PRRT1, BTNL2, C4B, HLA-DRB5, C6orf10, HLA-DRB1, CYP21A1P, HLA-DQA1	rs3096702-A	0.4	5E-9		1.07	[1.04-1.10]	Illumina [~ 2600000] (imputed)	N
611	chr6_mann_hap4	3537443	3537444	rs17208153	33941608	Khan A	2021-05-03	J Am Soc Nephrol	Medical Records-Based Genetic Studies of the Complement System.	Complement C4 levels	3,247 European ancestry individuals, 600 African ancestry individuals, 151 East Asian ancestry individuals	NA	6p21.32	C4	rs17208153-C	0.11	2E-11		0.24	[0.18-0.30] unit increase	NR [NR] (imputed)	N
611	chr6_mann_hap4	3537443	3537444	rs17208153	33941608	Khan A	2021-05-03	J Am Soc Nephrol	Medical Records-Based Genetic Studies of the Complement System.	Complement C4 levels	3,247 European ancestry individuals, 600 African ancestry individuals, 151 East Asian ancestry individuals	NA	6p21.32	C4	rs17208153-C	0.08	7E-11	(EA)	0.28	[0.20-0.35] unit increase	NR [NR] (imputed)	N
611	chr6_mann_hap4	3538099	3538100	rs9267853	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p21.32	NR	rs9267853-?	NR	3E-25		0.131	[0.11-0.16] unit increase	Illumina [at least 560000] (imputed)	N
612	chr6_mann_hap4	3540062	3540063	rs3132948	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Bronchiectasis	2,888 European ancestry cases, 440,263 European ancestry controls, 241 East Asian ancestry cases, 161,803 East Asian ancestry controls	NA	6p21.32		rs3132948-G	NR	7E-9		0.1526	[0.1-0.2] unit decrease	Affymetrix, Illumina [25839694] (imputed)	N
612	chr6_mann_hap4	3541993	3541994	rs377763	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Prostate cancer	7,438 White British ancestry cases, 118,206 White British ancestry controls	NA	6p21.32		rs377763-?	NR	9E-6		0.908716	[0.87-0.95]	NR [680312]	N
612	chr6_mann_hap4	3541993	3541994	rs377763	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling nervous	373,121 European ancestry individuals	NA	6p21.32	NR	rs377763-A	0.216145	1E-10		6.43	z score decrease	NR [10847151] (imputed)	N
612	chr6_mann_hap4	3544093	3544094	rs6941515	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on myeloid Dendritic Cell	2,872 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs6941515-T	0.5683199999999999	8E-12		0.2226	[0.16-0.29] unit decrease	Illumina [17926605] (imputed)	N
612	chr6_mann_hap4	3544368	3544369	rs3096692	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	NOTCH4	rs3096692-G	NR	3E-12		0.0293978	[0.021-0.038] unit decrease	Affymetrix [323858] (imputed)	N
612	chr6_mann_hap4	3544368	3544369	rs3096692	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	NOTCH4	rs3096692-G	NR	2E-10		0.0269591	[0.019-0.035] unit decrease	Affymetrix [127266] (imputed)	N
612	chr6_mann_hap4	3544432	3544433	rs443863	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.32	NR	rs443863-?	NR	6E-9				Affymetrix [~ 8270000] (imputed)	N
612	chr6_mann_hap4	3547634	3547635	rs9279532	31577861	Dai J	2019-10-31	Int J Cancer	Genome-wide association study of INDELs identified four novel susceptibility loci associated with lung cancer risk.	Lung cancer	20,871 European ancestry cases, 15,971 European ancestry controls, 2,331 Chinese ancestry cases, 3,077 Chinese ancestry controls	NA	6p21.32	NOTCH4	rs9279532-D	0.12	3E-7		1.11	[1.07-0.94]	Illumina [484196]	N
612	chr6_mann_hap4	3547696	3547697	rs28732180	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p21.32	NR	rs28732180-?	NR	1E-15		0.1765	[0.13-0.22] unit increase	Illumina [at least 560000] (imputed)	N
612	chr6_mann_hap4	3547859	3547860	rs549182	24837172	Juyal G	2014-05-16	Gut	Genome-wide association scan in north Indians reveals three novel HLA-independent risk loci for ulcerative colitis.	Ulcerative colitis	603 North Indian ancestry cases, 622 North Indian ancestry controls	733 North Indian ancestry cases, 1,148 North Indian ancestry controls	6p21.32	NOTCH4	rs549182-A	0.11	8E-10		1.59	[1.37-1.85]	Illumina [480391]	N
612	chr6_mann_hap4	3547924	3547925	rs9267911	23266558	Yamazaki K	2012-12-21	Gastroenterology	A genome-wide association study identifies 2 susceptibility Loci for Crohn's disease in a Japanese population.	Crohn's disease	372 Japanese ancestry cases,3,389 Japanese ancestry controls	Up to 1,151 Japanese ancestry cases, up to 15,800 Japanese ancestry controls	6p21.32	PBX2, NOTCH4	rs9267911-T	0.479	3E-7		1.5	[1.29-1.76]	Illumina [4929034] (imputed)	N
612	chr6_mann_hap4	3549293	3549294	rs3134938	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p21.32	NOTCH4	rs3134938-C	0.832	8E-7		0.076	[0.047-0.105] unit decrease	Affymetrix, Illumina [7374092] (imputed)	N
612	chr6_mann_hap4	3549344	3549345	rs3134937	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	NOTCH4	rs3134937-T	NR	7E-9		0.0212317	[0.014-0.028] unit decrease	Affymetrix [323858] (imputed)	N
612	chr6_mann_hap4	3549985	3549986	rs3130304	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	NOTCH4	rs3130304-A	NR	4E-8		0.0203511	[0.013-0.028] unit increase	Affymetrix [323123] (imputed)	N
612	chr6_mann_hap4	3550197	3550198	rs416352	30294719	Zeng Y	2018-08-24	JAMA Netw Open	Sex Differences in Genetic Associations With Longevity.	Longevity	564 Han Chinese ancestry male centenarian cases, 1,614 Han Chinese ancestry female centenarian cases, 773 Han Chinese ancestry male middle-aged controls, 1,526 Han Chinese ancestry female middle-aged controls	NA	6p21.32	NOTCH4	rs416352-?	0.51	8E-6	(female)	1.261	[1.14-1.40]	Illumina [5595657] (imputed)	N
612	chr6_mann_hap4	3551131	3551132	rs424232	23936387	Ostensson M	2013-08-02	PLoS One	A possible mechanism behind autoimmune disorders discovered by genome-wide linkage and association analysis in celiac disease.	Celiac disease	206 European ancestry trios	NA	6p21.32	HLA	rs424232-C		5E-21				Illumina [944512] (imputed)	N
612	chr6_mann_hap4	3552052	3552053	rs186298790	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	6p21.32	NR	rs186298790-?	NR	4E-11	(MIC-A)	3.61094	[2.54-4.68] unit increase	Illumina [11901634] (imputed)	N
612	chr6_mann_hap4	3552133	3552134	rs570559246	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Treatment or medication use - sulfasalazine (UKB data field 20003_1140909702)	866 European ancestry cases, 455,410 European ancestry controls	NA	6p21.32		rs570559246-C	0.003586	7E-10		3.33	[2.27-4.39] unit increase	NR [11842647] (imputed)	N
612	chr6_mann_hap4	3552258	3552259	rs380911	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.32	Intergenic	rs380911-?		9E-6		1.04	[1.02-1.06]	Illumina [7645193] (imputed)	N
612	chr6_mann_hap4	3552258	3552259	rs380911	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.32	Intergenic	rs380911-?		3E-6		1.51	[1.27-1.80]	Illumina [7645193] (imputed)	N
612	chr6_mann_hap4	3552579	3552581	rs28993469	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	6p21.32		rs28993469-C	0.261024	4E-12		0.019322034	[0.014-0.025] unit increase	Affymetrix [93095623] (imputed)	N
612	chr6_mann_hap4	3552666	3552667	rs507778	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	6p21.32	intergenic	rs507778-T	0.3256	1E-24		0.03915988	[0.032-0.047] unit decrease	Affymetrix [~ 2500000] (imputed)	N
612	chr6_mann_hap4	3552666	3552667	rs507778	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	6p21.32	intergenic	rs507778-T	0.3257	2E-29		0.04307319	[0.036-0.051] unit decrease	Affymetrix [~ 2500000] (imputed)	N
612	chr6_mann_hap4	3553161	3553162	rs28732181	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Strep throat	52,487 European ancestry cases, 22,017 European ancestry controls	NA	6p21.32	NR	rs28732181-?	NR	6E-6		0.0381	[0.022-0.055] unit decrease	Illumina [at least 560000] (imputed)	N
612	chr6_mann_hap4	3559913	3559914	rs6936204	25096241	Keller MF	2014-08-05	Hum Mol Genet	Trans-ethnic meta-analysis of white blood cell phenotypes.	Neutrophil count	9,802 Japanese ancestry individuals, 16,550 European ancestry individuals, 7,391 African American individuals	NA	6p21.32	AK123889	rs6936204-C	0.585	6E-6	(EA)	0.02	[0.012-0.028] unit increase	Illumina [NR] (imputed)	N
612	chr6_mann_hap4	3559913	3559914	rs6936204	25096241	Keller MF	2014-08-05	Hum Mol Genet	Trans-ethnic meta-analysis of white blood cell phenotypes.	Neutrophil count	9,802 Japanese ancestry individuals, 16,550 European ancestry individuals, 7,391 African American individuals	NA	6p21.32	AK123889	rs6936204-?	NR	3E-8		0.0196	[0.013-0.026] unit decrease	Illumina [NR] (imputed)	N
612	chr6_mann_hap4	3560053	3560054	rs9267972	24925725	Chung SA	2014-06-12	J Am Soc Nephrol	Lupus nephritis susceptibility loci in women with systemic lupus erythematosus.	Lupus nephritis in systemic lupus erythematosus	588 European ancestry cases, 1,412 European ancestry controls	NA	6p21.32	C6orf10, NOTCh4	rs9267972-A	NR	2E-6	(Dominant)	1.85	[1.46,2.33]	Affymetrix, Illumina [1621689] (imputed)	N
612	chr6_mann_hap4	3560234	3560235	rs3115574	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p21.32	NR	rs3115574-?	NR	2E-13		0.0942	[0.069-0.119] unit increase	Illumina [at least 560000] (imputed)	N
612	chr6_mann_hap4	3560667	3560668	rs2894240	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	XXbac-BPG154L12.4	rs2894240-A	NR	5E-12		0.0197637	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
612	chr6_mann_hap4	3560667	3560668	rs2894240	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	XXbac-BPG154L12.4	rs2894240-A	NR	2E-11		0.0191638	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
612	chr6_mann_hap4	3560667	3560668	rs2894240	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	XXbac-BPG154L12.4	rs2894240-A	NR	4E-11		0.0191969	[0.014-0.025] unit increase	Affymetrix [321169] (imputed)	N
612	chr6_mann_hap4	3561663	3561664	rs3115573	20595679	Feehally J	2010-07-01	J Am Soc Nephrol	HLA has strongest association with IgA nephropathy in genome-wide analysis.	Nephropathy	187 European ancestry child cases, 244 European ancestry cases, 4,980 European ancestry controls	NA	6p21.32	intergenic	rs3115573-?	NR	1E-9		1.62	[1.39-1.90]	Illumina [286200]	N
612	chr6_mann_hap4	3561809	3561810	rs9296015	21779181	Gorlova O	2011-07-14	PLoS Genet	Identification of novel genetic markers associated with clinical phenotypes of systemic sclerosis through a genome-wide association strategy.	Systemic sclerosis	2,296 European ancestry cases, 5,172 European ancestry controls	3,175 European ancestry cases, 4,210 European ancestry controls	6p21.32	NOTCH4	rs9296015-?	0.81	1E-8	(ATA positive)	1.85	[1.49-2.27]	Illumina [NR] (imputed)	N
612	chr6_mann_hap4	3561809	3561810	rs9296015	21505073	Terao C	2011-04-19	Hum Mol Genet	The human AIRE gene at chromosome 21q22 is a genetic determinant for the predisposition to rheumatoid arthritis in Japanese population.	Rheumatoid arthritis	1,247 Japanese ancestry cases, 1,486 Japanese ancestry controls	4,168 Japanese ancestry cases, 5,003 Japanese ancestry controls	6p21.32	HLA locus	rs9296015-?	NR	2E-38				Illumina [241523]	N
612	chr6_mann_hap4	3564370	3564371	rs9267995	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	XXbac-BPG154L12.4	rs9267995-G	NR	2E-9		0.0171285	[0.012-0.023] unit decrease	Affymetrix [321114] (imputed)	N
612	chr6_mann_hap4	3564370	3564371	rs9267995	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	XXbac-BPG154L12.4	rs9267995-G	NR	1E-21		0.027192	[0.022-0.033] unit decrease	Affymetrix [321169] (imputed)	N
612	chr6_mann_hap4	3564370	3564371	rs9267995	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	6p21.32	NR	rs9267995-A	0.548939	3E-14		0.0512585	[0.038-0.065] unit decrease	Affymetrix [17914406] (imputed)	N
612	chr6_mann_hap4	3564386	3564387	rs9296018	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.32		rs9296018-A	0.81	6E-10				Affymetrix [10369434] (imputed)	N
612	chr6_mann_hap4	3565369	3565370	rs139197261	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6p21.32	XXbac-BPG154L12.4	rs139197261-G	0.015037	2E-10		0.05895812	[0.041-0.077] unit decrease	Affymetrix [93095623] (imputed)	N
612	chr6_mann_hap4	3566111	3566112	rs3130320	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	XXbac-BPG154L12.4	rs3130320-T	NR	2E-25		0.030089	[0.024-0.036] unit decrease	Affymetrix [319769] (imputed)	N
612	chr6_mann_hap4	3566111	3566112	rs3130320	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	XXbac-BPG154L12.4	rs3130320-T	NR	1E-15		0.0257005	[0.019-0.032] unit decrease	Affymetrix [323858] (imputed)	N
612	chr6_mann_hap4	3566111	3566112	rs3130320	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	XXbac-BPG154L12.4	rs3130320-T	NR	5E-24		0.0292129	[0.024-0.035] unit decrease	Affymetrix [319769] (imputed)	N
612	chr6_mann_hap4	3566111	3566112	rs3130320	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	XXbac-BPG154L12.4	rs3130320-T	NR	6E-14		0.0240661	[0.018-0.03] unit decrease	Affymetrix [127266] (imputed)	N
612	chr6_mann_hap4	3566111	3566112	rs3130320	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	XXbac-BPG154L12.4	rs3130320-T	NR	7E-18		0.0248771	[0.019-0.031] unit increase	Affymetrix [321016] (imputed)	N
612	chr6_mann_hap4	3566111	3566112	rs3130320	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	XXbac-BPG154L12.4	rs3130320-T	NR	3E-23		0.0312285	[0.025-0.037] unit increase	Affymetrix [323123] (imputed)	N
612	chr6_mann_hap4	3566111	3566112	rs3130320	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.32	NOTCH4, C6orf10	rs3130320-C	0.6281	7E-8	(EA)	0.0224	[0.014-0.03] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
612	chr6_mann_hap4	3566111	3566112	rs3130320	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.32	BTNL2	rs3130320-C	0.6281	6E-6	(EA, men)	0.0276	[0.016-0.04] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
612	chr6_mann_hap4	3566111	3566112	rs3130320	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6p21.32	BTNL2	rs3130320-C	0.6281	6E-9	(EA)	0.0271	[0.018-0.036] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
612	chr6_mann_hap4	3566111	3566112	rs3130320	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6p21.32	BTNL2	rs3130320-C	0.6267	9E-6	(EA, men)	0.0304	[0.017-0.044] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
612	chr6_mann_hap4	3566111	3566112	rs3130320	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.32	NOTCH4, C6orf10	rs3130320-?	0.6281	5E-8	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
612	chr6_mann_hap4	3566111	3566112	rs3130320	21408207	Chung SA	2011-03-03	PLoS Genet	Differential genetic associations for systemic lupus erythematosus based on anti-dsDNA autoantibody production.	Systemic lupus erythematosus	811 anti-dsDNA positive European ancestry cases, 906 anti-dsDNA negative European ancestry cases, 4,813 European ancestry controls	NA	6p21.32	NOTCH4, C6orf10	rs3130320-T	0.39	3E-6	(case-only)	1.39	[1.21-1.60]	Illumina [421318] (imputed)	N
612	chr6_mann_hap4	3569207	3569208	rs112845108	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	XXbac-BPG154L12.4	rs112845108-T	NR	3E-8		0.0203101	[0.013-0.027] unit increase	Affymetrix [323123] (imputed)	N
612	chr6_mann_hap4	3569336	3569337	rs9268026	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IGF2R	5,361 Icelandic ancestry individuals	NA	6p21.32		rs9268026-G	0.07788	3E-13		0.252335	[0.18-0.32] unit increase	Illumina [7506463] (imputed)	N
612	chr6_mann_hap4	3572093	3572094	rs3132969	29534301	Nishida N	2018-03-13	Hepatology	Key HLA-DRB1-DQB1 haplotypes and role of the BTNL2 gene for response to a hepatitis B vaccine.	Response to hepatitis B vaccine	107 Japanese ancestry low responder individuals, 351 Japanese ancestry intermediate responder individuals, 735 Japanese ancestry high responder individuals	NA	6p21.32	OXA1L	rs3132969-?		2E-6		0.147	unit decrease	Affymetrix [427664]	N
612	chr6_mann_hap4	3573207	3573208	rs3132972	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Perceived unattractiveness to mosquitoes	16,576 European ancestry individuals	NA	6p21.32	intergenic	rs3132972-G	NR	2E-6		0.114743	[0.067-0.162] unit decrease	Illumina [7433384] (imputed)	N
612	chr6_mann_hap4	3573207	3573208	rs3132972	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.32	Intergenic	rs3132972-G	NR	8E-9		0.0190698	[0.013-0.026] unit decrease	Illumina [13520550] (imputed)	N
612	chr6_mann_hap4	3575505	3575506	rs9268072	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Hepatitis B	1,425 European ancestry cases, 218,180 European ancestry controls	NA	6p21.32	NR	rs9268072-?	NR	1E-6		0.2518	[0.15-0.36] unit increase	Illumina [at least 560000] (imputed)	N
612	chr6_mann_hap4	3586933	3586933	rs200663261	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cirrhosis	122 European ancestry cases, 347,284 European ancestry controls, 2,551 East Asian ancestry cases, 176,175 East Asian ancestry controls	NA	6p21.32		rs200663261-CTACA	NR	2E-11		0.1931	[0.14-0.25] unit increase	Affymetrix, Illumina [20457790] (imputed)	N
612	chr6_mann_hap4	3587459	3587460	rs3130340	18445777	Styrkarsdottir U	2008-04-29	N Engl J Med	Multiple genetic loci for bone mineral density and fractures.	Bone mineral density (spine)	5,861 European ancestry individuals	7,925 European ancestry individuals	6p21.32	MHC, C6orf10	rs3130340-T	0.79	1E-7		0.1	[0.06-0.13] s.d. decrease	Illumina [301019]	N
612	chr6_mann_hap4	3589877	3589878	rs145568234	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Ulcerative colitis	5,371 European ancestry cases, 412,561 European ancestry controls, 314 East Asian ancestry cases, 178,375 East Asian ancestry controls	NA	6p21.32		rs145568234-G	NR	5E-35		1.1793	[0.99-1.37] unit increase	Affymetrix, Illumina [25840981] (imputed)	N
612	chr6_mann_hap4	3597094	3597094	rs9281714	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs9281714-T	0.974	2E-6		1.419	[1.28-1.56]	Illumina [11270530] (imputed)	N
612	chr6_mann_hap4	3598347	3598348	rs184614409	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	6p21.32	NR	rs184614409-?	NR	8E-10		6.14	NR z score decrease	Illumina [at least 830937] (imputed)	N
612	chr6_mann_hap4	3600401	3600402	rs926070	24292274	Speedy HE	2013-12-01	Nat Genet	A genome-wide association study identifies multiple susceptibility loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	1,739 European ancestry cases, 5,199 European ancestry controls	1,144 European ancestry cases, 3,151 European ancestry controls	6p21.32	HLA	rs926070-A	0.66	4E-8		1.27	[NR]	Illumina [450000] (imputed)	N
612	chr6_mann_hap4	3604087	3604088	rs7775397	33909500	Moll M	2021-04-28	Am J Physiol Lung Cell Mol Physiol	A Systematic Analysis of Protein-altering Exonic Variants in Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease	up to 31,465 European ancestry cases, up to 203,688 European ancestry controls, up to 1,413 African ancestry cases, up to 6,080 African ancestry controls, up to 287 East Asian ancestry cases, up to 7,484 East Asian ancestry controls, up to 61 Hispanic cases, up to 613 Hispanic controls	NA	6p21.32	C6orf10	rs7775397-G	0.13	3E-13		1.12	[1.08 -1.15]	Illumina [at least 109036]	N
612	chr6_mann_hap4	3604087	3604088	rs7775397	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p21.32	C6orf10	rs7775397-G		1E-35		0.042	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
612	chr6_mann_hap4	3604087	3604088	rs7775397	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.32	c6orf10	rs7775397-G	0.1139	5E-71		3.83	[NR]	Illumina [242824]	N
612	chr6_mann_hap4	3608716	3608717	rs114355928	32534018	Liu X	2020-06-10	Brain Behav Immun	Genetic factors underlying the bidirectional relationship between autoimmune and mental disorders - findings from a Danish population-based study.	Autoimmune traits	1,383 Danish ancestry cases, 62,656 Danish ancestry controls	NA	6p21.32	NR	rs114355928-T	0.018	2E-8		2.02	[1.62-2.53]	NR [7721839] (imputed)	N
612	chr6_mann_hap4	3609145	3609146	rs9268155	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	6p21.32	NR	rs9268155-?	NR	1E-10		0.073	[0.051-0.095] unit decrease	Illumina [at least 560000] (imputed)	N
612	chr6_mann_hap4	3614990	3614991	rs56036302	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Sjogren's syndrome	303 East Asian ancestry cases, 175,599 East Asian ancestry controls	NA	6p21.32		rs56036302-T	0.200590293	6E-10		0.6675887	[0.46-0.88] unit increase	Illumina [13429612] (imputed)	N
612	chr6_mann_hap4	3614990	3614991	rs56036302	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Autoimmune hepatitis	85 East Asian ancestry cases, 166,529 East Asian ancestry controls	NA	6p21.32		rs56036302-T	0.200204228	7E-9		1.2431419	[0.82-1.66] unit increase	Illumina [13427809] (imputed)	N
612	chr6_mann_hap4	3616599	3616600	rs6457536	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs6457536-G	NR	5E-11		0.0222803	[0.016-0.029] unit decrease	Affymetrix [321169] (imputed)	N
612	chr6_mann_hap4	3619109	3619110	rs28366178	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	6p21.32	C6orf10	rs28366178-T	NR	9E-8		0.0353278	[0.022-0.048] unit increase	Illumina [13519193] (imputed)	N
612	chr6_mann_hap4	3621474	3621475	rs9268199	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	C6orf10	rs9268199-G	NR	2E-8		0.0203912	[0.013-0.028] unit decrease	Affymetrix [319769] (imputed)	N
612	chr6_mann_hap4	3621474	3621475	rs9268199	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs9268199-G	NR	3E-8		0.0201935	[0.013-0.027] unit decrease	Affymetrix [319769] (imputed)	N
612	chr6_mann_hap4	3621474	3621475	rs9268199	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs9268199-G	NR	2E-8		0.0207992	[0.014-0.028] unit decrease	Affymetrix [321169] (imputed)	N
612	chr6_mann_hap4	3621474	3621475	rs9268199	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.32	C6orf10	rs9268199-G	NR	2E-8	(women)	0.0327867	[0.021-0.044] unit increase	Illumina [13520550] (imputed)	N
612	chr6_mann_hap4	3621631	3621632	rs3864302	34116867	Tanaka N	2021-06-02	J Allergy Clin Immunol	Eight novel susceptibility loci and putative causal variants in atopic dermatitis.	Atopic dermatitis	2,597 Japanese ancestry cases, 110,504 Japanese ancestry controls	NA	6p21.32		rs3864302-?	NR	6E-17		0.77	[0.72-0.82]	Illumina [9900441] (imputed)	N
612	chr6_mann_hap4	3622179	3622180	rs9268202	29534301	Nishida N	2018-03-13	Hepatology	Key HLA-DRB1-DQB1 haplotypes and role of the BTNL2 gene for response to a hepatitis B vaccine.	Response to hepatitis B vaccine	107 Japanese ancestry low responder individuals, 351 Japanese ancestry intermediate responder individuals, 735 Japanese ancestry high responder individuals	NA	6p21.32	C6orf10	rs9268202-?		8E-8		0.168	unit decrease	Affymetrix [427664]	N
612	chr6_mann_hap4	3622461	3622462	rs6934429	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	C6orf10	rs6934429-T	NR	9E-14		0.0248579	[0.018-0.031] unit decrease	Affymetrix [319769] (imputed)	N
612	chr6_mann_hap4	3622461	3622462	rs6934429	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs6934429-T	NR	7E-13		0.0239747	[0.017-0.031] unit decrease	Affymetrix [319769] (imputed)	N
612	chr6_mann_hap4	3623855	3623856	rs74209703	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.32	NR	rs74209703-?	NR	5E-10				Affymetrix [~ 8270000] (imputed)	N
612	chr6_mann_hap4	3624251	3624252	rs28366179	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	6p21.32	C6orf10	rs28366179-A	0.1646	3E-21		0.04564547	[0.036-0.055] unit increase	Affymetrix [~ 2500000] (imputed)	N
612	chr6_mann_hap4	3624907	3624908	rs2395141	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs2395141-?	NR	3E-10				Affymetrix [~ 8270000] (imputed)	N
612	chr6_mann_hap4	3625693	3625694	rs6910071	20453842	Stahl EA	2010-05-09	Nat Genet	Genome-wide association study meta-analysis identifies seven new rheumatoid arthritis risk loci.	Rheumatoid arthritis	5,539 European ancestry cases, 20,169 European ancestry controls	6,768 European ancestry cases, 8,806 European ancestry controls	6p21.32	HLA-DRB1	rs6910071-G	0.22	1E-299		2.88	[2.73-3.03]	Affymetrix, Illumina [~ 2716259] (imputed)	N
612	chr6_mann_hap4	3629524	3629525	rs2022542	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	6p21.32	C6orf10	rs2022542-G	0.0582	2E-52		0.1169749	[0.1-0.13] unit increase	Affymetrix [~ 2500000] (imputed)	N
612	chr6_mann_hap4	3630167	3630168	rs2746115	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	6p21.32	NR	rs2746115-?	NR	8E-9				Affymetrix [~ 8270000] (imputed)	N
612	chr6_mann_hap4	3636416	3636417	rs2395143	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	C6orf10, HNRNPA1P2	rs2395143-G	NR	2E-10		0.0215226	[0.015-0.028] unit decrease	Affymetrix [323123] (imputed)	N
612	chr6_mann_hap4	3638267	3638270	rs759777208	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	C6orf10	rs759777208-CT	NR	3E-12		0.0275667	[0.02-0.035] unit decrease	Affymetrix [323858] (imputed)	N
612	chr6_mann_hap4	3638267	3638270	rs759777208	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	C6orf10	rs759777208-CT	NR	2E-11		0.0265095	[0.019-0.034] unit decrease	Affymetrix [127266] (imputed)	N
612	chr6_mann_hap4	3638267	3638270	rs759777208	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	C6orf10	rs759777208-CT	NR	4E-8		0.0212618	[0.014-0.029] unit increase	Affymetrix [323123] (imputed)	N
612	chr6_mann_hap4	3638267	3638270	rs759777208	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p21.32	C6orf10	rs759777208-CT	NR	2E-8		0.0218536	[0.014-0.03] unit decrease	Affymetrix [323858] (imputed)	N
612	chr6_mann_hap4	3638582	3638583	rs9268249	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	C6orf10	rs9268249-A	NR	5E-8		0.015398	[0.0099-0.0209] unit decrease	Affymetrix [321016] (imputed)	N
612	chr6_mann_hap4	3638582	3638583	rs9268249	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	C6orf10	rs9268249-A	NR	7E-15		0.0239145	[0.018-0.03] unit decrease	Affymetrix [323123] (imputed)	N
612	chr6_mann_hap4	3638712	3638713	rs6913664	34785669	Grosche S	2021-11-16	Nat Commun	Rare variant analysis in eczema identifies exonic variants in DUSP1, NOTCH4 and SLC9A4.	Eczema	20,016 European ancestry cases, 380,433 European ancestry controls	NA	6p21.32		rs6913664-T	0.4549	1E-15		0.91		Affymetrix, Illumina [9397031] (imputed)	N
612	chr6_mann_hap4	3638716	3638717	rs9268251	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	C6orf10	rs9268251-A	NR	7E-11		0.0216525	[0.015-0.028] unit decrease	Affymetrix [319769] (imputed)	N
612	chr6_mann_hap4	3638716	3638717	rs9268251	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs9268251-A	NR	3E-10		0.0208763	[0.014-0.027] unit decrease	Affymetrix [319769] (imputed)	N
612	chr6_mann_hap4	3638716	3638717	rs9268251	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs9268251-A	NR	5E-10		0.0208582	[0.014-0.027] unit decrease	Affymetrix [321169] (imputed)	N
612	chr6_mann_hap4	3642300	3642301	rs145396511	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs145396511-T	0.989	5E-9	(conditional)	1.574	[1.42-1.72]	Illumina [11270530] (imputed)	N
612	chr6_mann_hap4	3643651	3643652	rs3129960	33106546	Johnson TA	2020-10-26	J Hum Genet	Association of an IGHV3-66 gene variant with Kawasaki disease.	Kawasaki disease	1,276 East Asian ancestry cases, 5,086 East Asian ancestry controls	2,152 East Asian ancestry cases, 2,751 East Asian ancestry controls	6p21.32	C6orf10, LOC101929163	rs3129960-G	NR	7E-13		0.73	[0.67-0.80]	Affymetrix, Illumina [6265045] (imputed)	N
612	chr6_mann_hap4	3644269	3644270	rs115378818	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.32	C6orf10	rs115378818-T	0.0143760000000001	3E-49		0.16935384	[0.15-0.19] unit decrease	Affymetrix [93095623] (imputed)	N
612	chr6_mann_hap4	3645224	3645225	rs1265757	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p21.32	C6orf10	rs1265757-A	0.343	1E-33				Illumina [118177]	N
612	chr6_mann_hap4	3648080	3648081	rs78546106	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs78546106-?	NR	6E-11				Affymetrix [~ 8270000] (imputed)	N
612	chr6_mann_hap4	3648500	3648501	rs926592	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p21.32	TSBP1	rs926592-C	0.658	6E-6		0.059	[0.034-0.084] unit increase	Affymetrix, Illumina [7374092] (imputed)	N
612	chr6_mann_hap4	3648821	3648822	rs3129900	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (multivariate analysis)	477,968 European ancestry individuals	NA	6p21.32	C6orf10	rs3129900-G	0.171	7E-17		0.05	[0.038-0.062] unit decrease	NR [NR] (imputed)	N
612	chr6_mann_hap4	3648821	3648822	rs3129900	20639878	Singer JB	2010-07-18	Nat Genet	A genome-wide study identifies HLA alleles associated with lumiracoxib-related liver injury.	Lumiracoxib-related liver injury	31 European ancestry cases, 3 Hispanic cases, 1 case, 176 European, Hispanic and other ancestry controls	79 European ancestry cases, 16 Hispanic ancestry cases, 1 case, 405 European, Hispanic and other ancestry controls	6p21.32	HLA-DRB1	rs3129900-?	0.105	7E-25		7.5	[5.0-11.3]	Affymetrix [682386]	N
612	chr6_mann_hap4	3648932	3648933	rs9368716	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	C6orf10	rs9368716-A	NR	4E-17		0.0234977	[0.018-0.029] unit increase	Affymetrix [319769] (imputed)	N
612	chr6_mann_hap4	3648932	3648933	rs9368716	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs9368716-A	NR	1E-16		0.0231755	[0.018-0.029] unit increase	Affymetrix [319769] (imputed)	N
612	chr6_mann_hap4	3648932	3648933	rs9368716	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs9368716-A	NR	4E-9		0.0166452	[0.011-0.022] unit increase	Affymetrix [321114] (imputed)	N
612	chr6_mann_hap4	3648932	3648933	rs9368716	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs9368716-A	NR	4E-17		0.023828	[0.018-0.029] unit increase	Affymetrix [321169] (imputed)	N
612	chr6_mann_hap4	3651751	3651752	rs9469099	23042114	Hirota T	2012-10-07	Nat Genet	Genome-wide association study identifies eight new susceptibility loci for atopic dermatitis in the Japanese population.	Atopic dermatitis	1,472 Japanese ancestry cases, 7,971 Japanese ancestry controls	1,856 Japanese ancestry cases, 7,021 Japanese ancestry controls	6p21.32	C6orf10	rs9469099-G	0.909	5E-19		1.61	[1.44-1.80]	Illumina [606164]	N
612	chr6_mann_hap4	3653706	3653707	rs2849018	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Diastolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	6p21.32	C6orf10	rs2849018-C	0.6531	2E-17		0.3443	[0.26-0.42] mmHg increase	Affymetrix [NR] (imputed)	N
612	chr6_mann_hap4	3654302	3654303	rs3132954	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.32	NR	rs3132954-?	NR	3E-11				Affymetrix [~ 8270000] (imputed)	N
612	chr6_mann_hap4	3656504	3656505	rs1265764	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	C6orf10	rs1265764-A	NR	2E-8		0.0409576	[0.027-0.055] unit decrease	Affymetrix [323858] (imputed)	N
612	chr6_mann_hap4	3656504	3656505	rs1265764	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	C6orf10	rs1265764-A	NR	1E-8		0.0407492	[0.027-0.055] unit increase	Affymetrix [323123] (imputed)	N
612	chr6_mann_hap4	3656504	3656505	rs1265764	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.32	C6orf10, XXbac-BPG154L12.5	rs1265764-A	0.0414	7E-7		0.1177	[0.071-0.164] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
612	chr6_mann_hap4	3658099	3658100	rs78461719	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	6p21.32	NR	rs78461719-T	0.03388599999999997	1E-8		0.0314455	[0.022-0.041] unit increase	Affymetrix [16578495] (imputed)	N
612	chr6_mann_hap4	3658573	3658574	rs910049	23321320	Urabe Y	2013-01-12	J Hepatol	A genome-wide association study of HCV-induced liver cirrhosis in the Japanese population identifies novel susceptibility loci at the MHC region.	Hepatitis C induced liver cirrhosis	682 Japanese ancestry cases, 1,045 Japanese ancestry controls	936 Japanese ancestry cases, 3,809 Japanese ancestry controls	6p21.32	C6orf10	rs910049-A	0.142	9E-11		1.46	[1.28-1.62]	Illumina [431618]	N
612	chr6_mann_hap4	3662483	3662484	rs9268301	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6p21.32	C6orf10	rs9268301-A	0.438	2E-6	(Diet carbohydrate )	0.03	[NR] g/d increase	Illumina [899892]	N
612	chr6_mann_hap4	3664319	3664320	rs368529276	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs368529276-A	0.961	4E-19		2.522	[2.32-2.72]	Illumina [11270530] (imputed)	N
612	chr6_mann_hap4	3664400	3664401	rs2395148	18576341	Behrens EM	2008-06-24	Arthritis Rheum	Association of the TRAF1-C5 locus on chromosome 9 with juvenile idiopathic arthritis.	Arthritis (juvenile idiopathic)	67 European ancestry cases, 1,952 European ancestry controls, 63 cases	NA	6p21.32	HLA-DRB1	rs2395148-?	NR	2E-10		5.37	[3.02-9.56]	Illumina [524684]	N
612	chr6_mann_hap4	3668217	3668218	rs13196329	29196614	Sud A	2017-12-01	Nat Commun	Genome-wide association study of classical Hodgkin lymphoma identifies key regulators of disease susceptibility.	Mixed cellularity Hodgkin lymphoma	828 European ancestry cases, 14,315 European ancestry controls	135 cases, 3,069 controls	6p21.32	C6orf10	rs13196329-?	NR	3E-14	(conditioned on rs1633096)	5.88	[3.70-9.09]	Illumina [> 10000000] (imputed)	N
612	chr6_mann_hap4	3668217	3668218	rs13196329	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral fat	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	6p21.32	C6orf10	rs13196329-C	0.02	3E-6	(women)			Affymetrix, Illumina [2500000] (imputed)	N
612	chr6_mann_hap4	3669499	3669500	rs7775581	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.32		rs7775581-C	0.429	4E-12				Affymetrix [10369434] (imputed)	N
612	chr6_mann_hap4	3669767	3669768	rs9268310	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	Systemic lupus erythematosus	1,639 East Asian ancestry cases, 2,410 East Asian ancestry controls	NA			rs9268310-C	NR	7E-14		0.3626	[0.27-0.46] unit decrease	Illumina [NR] (imputed)	N
613	chr6_mann_hap4	3671994	3671995	rs137931178	26959717	Nicoletti P	2016-03-09	Pharmacogenet Genomics	HLA-DRB1*16: 01-DQB1*05: 02 is a novel genetic risk factor for flupirtine-induced liver injury.	Drug-induced liver injury	620 European ancestry cases, 10,588 European ancestry controls	NA	6p21.32	MHC	rs137931178-?	NR	7E-6		79.0	[11.72-533.7]	Illumina [NR] (imputed)	N
613	chr6_mann_hap4	3678046	3678047	rs2143462	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	C6orf10	rs2143462-A	NR	7E-12		0.0268233	[0.019-0.034] unit decrease	Affymetrix [323858] (imputed)	N
613	chr6_mann_hap4	3678046	3678047	rs2143462	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	C6orf10	rs2143462-A	NR	6E-11		0.0256594	[0.018-0.033] unit decrease	Affymetrix [127266] (imputed)	N
613	chr6_mann_hap4	3679029	3679030	rs3129934	22457343	Martinelli-Boneschi F	2012-03-28	Mult Scler	A genome-wide association study in progressive multiple sclerosis.	Multiple sclerosis	197 European ancestry cases, 234 European ancestry controls	379 European ancestry cases, 398 European ancestry controls	6p21.32	C6orf10	rs3129934-T	0.10	7E-16		2.34	[1.90-2.87]	Affymetrix [277866]	N
613	chr6_mann_hap4	3679029	3679030	rs3129934	18941528	Comabella M	2008-10-22	PLoS One	Identification of a novel risk locus for multiple sclerosis at 13q31.3 by a pooled genome-wide scan of 500,000 single nucleotide polymorphisms.	Multiple sclerosis	242 European ancestry cases, 242 European ancestry controls	553 European ancestry cases, 1,033 European ancestry controls	6p21.32	HLA-DRB1	rs3129934-T	NR	9E-11		3.3	[2.3-4.9]	Affymetrix [428867]	N
613	chr6_mann_hap4	3679387	3679388	rs113857285	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Celiac disease (PheCode 557.1)	1,036 European ancestry cases, 455,312 European ancestry controls	NA	6p21.32		rs113857285-A	0.002145	8E-10		4.04	[2.75-5.33] unit increase	NR [11842647] (imputed)	N
613	chr6_mann_hap4	3679608	3679609	rs3129939	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.32	c6orf10	rs3129939-G	0.1772	2E-40		2.6	[NR]	Illumina [242824]	N
613	chr6_mann_hap4	3680473	3680474	rs2273017	21900946	Nakabayashi K	2011-09-08	J Hum Genet	Identification of independent risk loci for Graves' disease within the MHC in the Japanese population.	Graves' disease	1,119 Japanese ancestry cases, 2,718 Japanese ancestry controls	432 Japanese ancestry cases, 1,157 Japanese ancestry controls	6p21.32	MHC	rs2273017-A	0.51	2E-22		1.53	[1.40-1.66]	Perlegen [268068]	N
613	chr6_mann_hap4	3680791	3680803	rs11275478	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atopic dermatitis	4,296 East Asian ancestry cases, 163,807 East Asian ancestry controls	NA	6p21.32		rs11275478-A	0.218070297	4E-17		0.25364324	[0.19-0.31] unit decrease	Illumina [13428180] (imputed)	N
613	chr6_mann_hap4	3681120	3681121	rs3129942	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	6p21.32	C6orf10	rs3129942-G	0.742436	3E-18		0.013944	[0.011-0.017] unit decrease	Affymetrix [12370749]	N
613	chr6_mann_hap4	3681533	3681534	rs3129943	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cirrhosis	2,551 East Asian ancestry cases, 176,175 East Asian ancestry controls	NA	6p21.32		rs3129943-G	0.365494247	2E-11		0.19759746	[0.14-0.26] unit increase	Illumina [13429980] (imputed)	N
613	chr6_mann_hap4	3681533	3681534	rs3129943	21804548	Hirota T	2011-07-31	Nat Genet	Genome-wide association study identifies three new susceptibility loci for adult asthma in the Japanese population.	Asthma	1,532 Japanese ancestry cases, 3,304 Japanese ancestry controls	5,639 Japanese ancestry cases, 24,608 Japanese ancestry controls	6p21.32	C6orf10	rs3129943-T	0.62	3E-15		1.17	[1.12-1.21]	Illumina [458847]	N
613	chr6_mann_hap4	3681824	3681825	rs2073044	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	C6orf10	rs2073044-T	NR	3E-16		0.0261214	[0.02-0.032] unit increase	Affymetrix [319769] (imputed)	N
613	chr6_mann_hap4	3681824	3681825	rs2073044	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs2073044-T	NR	5E-16		0.0258492	[0.02-0.032] unit increase	Affymetrix [319769] (imputed)	N
613	chr6_mann_hap4	3681824	3681825	rs2073044	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs2073044-T	NR	8E-14		0.0241214	[0.018-0.03] unit increase	Affymetrix [321169] (imputed)	N
613	chr6_mann_hap4	3681914	3681915	rs2050190	34116867	Tanaka N	2021-06-02	J Allergy Clin Immunol	Eight novel susceptibility loci and putative causal variants in atopic dermatitis.	Atopic dermatitis	2,597 Japanese ancestry cases, 110,504 Japanese ancestry controls, 25,685 European ancestry cases, 76,768 European ancestry controls	NA	6p21.32		rs2050190-?	NR	4E-13		0.8	[0.75-0.85]	Illumina [5170515] (imputed)	N
613	chr6_mann_hap4	3681914	3681915	rs2050190	22703881	Tang W	2012-06-14	Am J Hum Genet	Genetic associations for activated partial thromboplastin time and prothrombin time, their gene expression profiles, and risk of coronary artery disease.	Activated partial thromboplastin time	9,240 European ancestry individuals	2611 European ancestry individuals	6p21.32	C6orf10	rs2050190-A	NR	7E-7		0.2528	[0.17-0.34] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
613	chr6_mann_hap4	3682622	3682623	rs9501618	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs9501618-C	0.016	9E-26	(Complement C4, C4A.C4B.4481.34.2)	1.03	[0.83-1.23] unit increase	Affymetrix [10572788] (imputed)	N
613	chr6_mann_hap4	3682678	3682679	rs6913309	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Strep throat	52,487 European ancestry cases, 22,017 European ancestry controls	NA	6p21.32	NR	rs6913309-?	NR	5E-7		0.0308	[0.019-0.043] unit decrease	Illumina [at least 560000] (imputed)	N
613	chr6_mann_hap4	3682678	3682679	rs6913309	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.32	Intergenic	rs6913309-T	NR	4E-6	(men)	0.0229829	[0.013-0.033] unit increase	Illumina [13520550] (imputed)	N
613	chr6_mann_hap4	3682735	3682736	rs2050188	31375628	Tengvall K	2019-08-02	Proc Natl Acad Sci U S A	Molecular mimicry between Anoctamin 2 and Epstein-Barr virus nuclear antigen 1 associates with multiple sclerosis risk.	Anti-anoctamin 2 antibody levels	11,936 European ancestry individuals	NA	6p21.32	NR	rs2050188-G	NR	2E-14		0.07	[0.046-0.094] unit increase	Illumina [615763]	N
613	chr6_mann_hap4	3682735	3682736	rs2050188	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	6p21.32	HLA-DRB5, C6orf10	rs2050188-T	0.673	9E-6	(EA)	0.0509	[0.028-0.073] unit increase	Affymetrix, Illumina [NR] (imputed)	N
613	chr6_mann_hap4	3682735	3682736	rs2050188	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	6p21.32	HLA-DRB5, C6orf10	rs2050188-T	0.67	8E-9		1.06	[1.04-1.08]	Affymetrix, Illumina [NR] (imputed)	N
613	chr6_mann_hap4	3682763	3682764	rs6913471	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	C6orf10	rs6913471-A	NR	1E-8		0.0182835	[0.012-0.025] unit decrease	Affymetrix [323123] (imputed)	N
613	chr6_mann_hap4	3682944	3682945	rs2281276	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	C6orf10	rs2281276-G	NR	2E-11		0.0210706	[0.015-0.027] unit increase	Affymetrix [323858] (imputed)	N
613	chr6_mann_hap4	3682944	3682945	rs2281276	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	C6orf10	rs2281276-G	NR	2E-10		0.0199503	[0.014-0.026] unit increase	Affymetrix [127266] (imputed)	N
613	chr6_mann_hap4	3682944	3682945	rs2281276	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	C6orf10	rs2281276-G	NR	4E-15		0.0241531	[0.018-0.03] unit decrease	Affymetrix [323123] (imputed)	N
613	chr6_mann_hap4	3682944	3682945	rs2281276	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	6p21.32	C6orf10	rs2281276-G	0.472805	6E-12		0.01778208	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
613	chr6_mann_hap4	3683710	3683711	rs3129944	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs3129944-G	NR	4E-10		0.0217534	[0.015-0.029] unit decrease	Affymetrix [321169] (imputed)	N
613	chr6_mann_hap4	3684046	3684047	rs9378202	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	C6orf10	rs9378202-C	NR	3E-9		0.0239944	[0.016-0.032] unit decrease	Affymetrix [323123] (imputed)	N
613	chr6_mann_hap4	3684191	3684192	rs9268402	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	C6orf10	rs9268402-G	NR	2E-17		0.0239092	[0.018-0.029] unit decrease	Affymetrix [319769] (imputed)	N
613	chr6_mann_hap4	3684191	3684192	rs9268402	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs9268402-G	NR	4E-17		0.0236172	[0.018-0.029] unit decrease	Affymetrix [319769] (imputed)	N
613	chr6_mann_hap4	3684191	3684192	rs9268402	22751097	Lu X	2012-07-01	Nat Genet	Genome-wide association study in Han Chinese identifies four new susceptibility loci for coronary artery disease.	Coronary heart disease	1,515 Han Chinese ancestry cases, 5,019 Han Chinese ancestry controls	15,460 Han Chinese ancestry cases, 11,472 Han Chinese ancestry controls	6p21.32	BTNL2, C6orf10	rs9268402-G	0.59	3E-15		1.16	[1.12-1.20]	Affymetrix [~ 2200000] (imputed)	N
613	chr6_mann_hap4	3684236	3684237	rs9391858	31566214	Kulminski AM	2019-09-30	J Gerontol A Biol Sci Med Sci	Quantitative and qualitative role of antagonistic heterogeneity in genetics of blood lipids.	Total cholesterol levels	29,902 European ancestry individuals	NA			rs9391858-G	0.14	3E-8		2.4	[1.56-3.24] unit increase	Affymetrix, Illumina [up to 2500000] (imputed)	N
613	chr6_mann_hap4	3684947	3684948	rs73729220	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.32	NR	rs73729220-G	0.015	6E-7	(women)	0.670827	[0.41-0.93] unit increase	Affymetrix [up to 8900000] (imputed)	N
613	chr6_mann_hap4	3684947	3684948	rs73729220	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.32	NR	rs73729220-G	0.015	4E-9		0.429629	[0.29-0.57] unit increase	Affymetrix [up to 8900000] (imputed)	N
613	chr6_mann_hap4	3685365	3685366	rs3129945	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p21.32	NR	rs3129945-?	NR	3E-6		4.704	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
613	chr6_mann_hap4	3686197	3686198	rs3117106	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	C6orf10	rs3117106-C	NR	4E-11		0.0274536	[0.019-0.036] unit increase	Affymetrix [323123] (imputed)	N
613	chr6_mann_hap4	3687914	3687915	rs12528797	28107422	de Vries PS	2017-01-20	PLoS One	Comparison of HapMap and 1000 Genomes Reference Panels in a Large-Scale Genome-Wide Association Study.	Fibrinogen levels	91,953 European ancestry individuals (imputed to HapMap)		6p21.32	C6orf10, HCG23	rs12528797-?	NR	9E-9		0.0095	unit increase	Affymetrix, Illumina [2749429] (imputed)	N
613	chr6_mann_hap4	3688111	3688112	rs7758128	21326295	Jin Y	2011-02-17	J Invest Dermatol	Genome-wide analysis identifies a quantitative trait locus in the MHC class II region associated with generalized vitiligo age of onset.	Vitiligo	1,339 European ancestry cases	677 European ancestry cases	6p21.32	BTNL2, C6orf10	rs7758128-A	0.06	8E-11				Illumina [520460]	N
613	chr6_mann_hap4	3688423	3688424	rs2395153	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs2395153-G	NR	9E-12		0.0195615	[0.014-0.025] unit increase	Affymetrix [321114] (imputed)	N
613	chr6_mann_hap4	3688423	3688424	rs2395153	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs2395153-G	NR	3E-19		0.0258131	[0.02-0.031] unit increase	Affymetrix [321169] (imputed)	N
613	chr6_mann_hap4	3688517	3688518	rs2894254	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	6p21.32	C6orf10, BTNL2	rs2894254-T	NR	1E-13		0.238275	[0.18-0.3] unit increase	Illumina [at least 950000] (imputed)	N
613	chr6_mann_hap4	3688517	3688518	rs2894254	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.32	NOTCH4, C6orf10	rs2894254-T	0.8879	1E-7	(EA)	0.0337	[0.021-0.046] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
613	chr6_mann_hap4	3688517	3688518	rs2894254	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.32	BTNL2	rs2894254-T	0.8879	3E-9	(EA, men)	0.0557	[0.037-0.074] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
613	chr6_mann_hap4	3688517	3688518	rs2894254	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6p21.32	BTNL2	rs2894254-T	0.888	6E-8	(men)	0.058	[0.037-0.079] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
613	chr6_mann_hap4	3688517	3688518	rs2894254	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6p21.32	BTNL2	rs2894254-T	0.888	6E-8	(EA, men)	0.058	[0.037-0.079] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
613	chr6_mann_hap4	3688517	3688518	rs2894254	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6p21.32	BTNL2	rs2894254-T	0.8879	6E-7	(EA)	0.0363	[0.022-0.051] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
613	chr6_mann_hap4	3688517	3688518	rs2894254	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.32	NOTCH4, C6orf10	rs2894254-?	0.8879	5E-7	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
613	chr6_mann_hap4	3688517	3688518	rs2894254	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.32	BTNL2	rs2894254-?	0.8879	9E-9	(men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
613	chr6_mann_hap4	3688517	3688518	rs2894254	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.32	BTNL2	rs2894254-?	0.8879	9E-9	(EA, men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
613	chr6_mann_hap4	3689315	3689316	rs9268435	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Serum alkaline phosphatase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	6p21.32	LOC101929163	rs9268435-?		1E-10		0.0358	[0.025-0.047] unit decrease	Illumina [31500000] (imputed)	N
613	chr6_mann_hap4	3692385	3692386	rs3117103	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	6p21.32		rs3117103-A	0.859948	4E-9		0.0339726	[0.023-0.045] unit decrease	NR [11722792] (imputed)	N
613	chr6_mann_hap4	3693282	3693283	rs28732201	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p21.32	NR	rs28732201-?	NR	6E-16		0.1787	[0.14-0.22] unit decrease	Illumina [at least 560000] (imputed)	N
613	chr6_mann_hap4	3694394	3694395	rs6930777	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6p21.32		rs6930777-?	NR	5E-17		1.14262	[1.11-1.17]	NR [685523]	N
613	chr6_mann_hap4	3695445	3695446	rs9268465	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HCG23	rs9268465-T	NR	6E-10		0.0196001	[0.013-0.026] unit decrease	Affymetrix [319769] (imputed)	N
613	chr6_mann_hap4	3695445	3695446	rs9268465	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HCG23	rs9268465-T	NR	2E-8		0.0196784	[0.013-0.027] unit decrease	Affymetrix [323858] (imputed)	N
613	chr6_mann_hap4	3695445	3695446	rs9268465	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HCG23	rs9268465-T	NR	1E-9		0.0191769	[0.013-0.025] unit decrease	Affymetrix [319769] (imputed)	N
613	chr6_mann_hap4	3696749	3696750	rs9279623	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	6p21.32	HCG23	rs9279623-G	0.5081	7E-9		5.794	NR z score increase	Illumina [26237160] (imputed)	N
613	chr6_mann_hap4	3697260	3697261	rs4424066	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	6p21.32	NR	rs4424066-A	0.578029598622173	7E-14		0.024764335	units decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
613	chr6_mann_hap4	3700073	3700074	rs146003878	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs146003878-A	0.016	5E-11	(conditional)	1.678	[1.52-1.83]	Illumina [11270530] (imputed)	N
613	chr6_mann_hap4	3701035	3701036	rs3129950	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.32	BTNL2	rs3129950-G	0.8899	4E-9	(men)	0.0593	[0.04-0.079] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
613	chr6_mann_hap4	3701104	3701105	rs3117099	22688191	Bergen SE	2012-06-12	Mol Psychiatry	Genome-wide association study in a Swedish population yields support for greater CNV and MHC involvement in schizophrenia compared with bipolar disorder.	Bipolar disorder and schizophrenia	2,111 European ancestry schizophrenia cases, 836 European ancestry bipolar disorder cases, 2,535 European ancestry controls	NA	6p21.32	other genes, MHC	rs3117099-?	NR	3E-6		1.25	[NR]	Affymetrix [745006]	N
613	chr6_mann_hap4	3701348	3701349	rs3117098	21804548	Hirota T	2011-07-31	Nat Genet	Genome-wide association study identifies three new susceptibility loci for adult asthma in the Japanese population.	Asthma	1,532 Japanese ancestry cases, 3,304 Japanese ancestry controls	5,639 Japanese ancestry cases, 24,608 Japanese ancestry controls	6p21.32	BTNL2	rs3117098-G	0.25	5E-12		1.16	[1.11-1.21]	Illumina [458847]	N
613	chr6_mann_hap4	3701384	3701385	rs9348883	29903748	Debiec H	2018-06-14	J Am Soc Nephrol	Transethnic, Genome-Wide Analysis Reveals Immune-Related Risk Alleles and Phenotypic Correlates in Pediatric Steroid-Sensitive Nephrotic Syndrome.	Childhood steroid-sensitive nephrotic syndrome	244 European ancestry cases, 2,552 European ancestry controls, 56 African cases, 454 African controls, 85 Maghrebian cases, 261 Maghrebian controls	NA	6p21.32	LOC101929163, HCG23, BTNL2	rs9348883-T	0.94	9E-7	(conditioned on rs1063348 & rs28366266)	3.5	[2.13-5.83]	Illumina [at least 7529344] (imputed)	N
613	chr6_mann_hap4	3701524	3701525	rs3117097	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling nervous	373,121 European ancestry individuals	NA	6p21.32	PSORS1C1	rs3117097-A	0.164022	4E-10		6.26	z score increase	NR [10847151] (imputed)	N
613	chr6_mann_hap4	3702295	3702296	rs16870123	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	6p21.32	NR	rs16870123-?	NR	1E-10		6.408	NR z score decrease	Illumina [at least 830937] (imputed)	N
613	chr6_mann_hap4	3703968	3703969	rs3817971	34871226	Kim SY	2021-11-01	Medicine (Baltimore)	Genome-wide association study identifies BTNL2 associated with atopic asthma in children.	Atopic asthma	243 East Asian ancestry child cases, 134 East Asian ancestry child controls	NA	6p21.32		rs3817971-A	NR	6E-7		3.509	[2.09-5.889]	Affymetrix [423461]	N
613	chr6_mann_hap4	3703968	3703969	rs3817971	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p21.32	C6orf10, BTNL2	rs3817971-C	0.03	5E-6	(Turkish)	2.62	[1.71-4.01]	Illumina [up to 547389]	N
613	chr6_mann_hap4	3704320	3704321	rs17202393	33592630	Herrera-Rivero M	2021-02-16	Thromb Haemost	Single- and Multimarker Genome-Wide Scans Evidence Novel Genetic Risk Modifiers for Venous Thromboembolism.	Venous thromboembolism	964 European ancestry cases, 899 European ancestry controls	NA	6p21.32	BTNL2, HCG23	rs17202393-A	NR	4E-38		0.03743	[0.02273-0.06163]	Illumina [484621]	N
613	chr6_mann_hap4	3704846	3704847	rs114516436	27629369	Gao J	2016-09-15	Neuropsychopharmacology	Genome-Wide Association Study of Loneliness Demonstrates a Role for Common Variation.	Loneliness (multivariate analysis)	8,490 European ancestry individuals, 1,228 African American individuals, 867 Hispanic American individuals, 175 individuals	NA	6p21.32	BTNL2, HCG23, C6orf10	rs114516436-?	NR	2E-6	(EA)			Illumina [7205781] (imputed)	N
613	chr6_mann_hap4	3706050	3706051	rs1980493	25936594	Tomer Y	2015-04-27	J Autoimmun	Genome wide identification of new genes and pathways in patients with both autoimmune thyroiditis and type 1 diabetes.	Type 1 diabetes and autoimmune thyroid diseases	346 European ancestry cases, 727 European ancestry controls	185 European ancestry cases, 340 European ancestry controls	6p21.32	BTNL2	rs1980493-G	NR	2E-20		2.5034		Illumina [514008]	N
613	chr6_mann_hap4	3706050	3706051	rs1980493	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.32	BTNL2	rs1980493-G	0.1656	1E-48		2.87	[NR]	Illumina [242824]	N
613	chr6_mann_hap4	3706050	3706051	rs1980493	19287509	Cui J	2009-03-14	Mol Med	Genome-wide association study of determinants of anti-cyclic citrullinated peptide antibody titer in adults with rheumatoid arthritis.	Anti-cyclic Citrullinated Peptide Antibody	531 European ancestry cases	849 European ancestry cases	6p21.32	HLA-DRA, BTNL2	rs1980493-?	0.13	5E-7				Affymetrix [97248]	N
613	chr6_mann_hap4	3706651	3706652	rs2076530	22936702	Hofmann S	2012-08-30	Eur Respir J	Genome-wide association analysis reveals 12q13.3-q14.1 as new risk locus for sarcoidosis.	Sarcoidosis	637 European ancestry cases, 1,233 European ancestry controls	3,121 European ancestry cases, 4,284 European ancestry controls	6p21.32	BTNL2	rs2076530-?	NR	3E-11	(Chronic)			Affymetrix [677619]	N
613	chr6_mann_hap4	3706679	3706680	rs9268480	19915573	Asano K	2009-11-15	Nat Genet	A genome-wide association study identifies three new susceptibility loci for ulcerative colitis in the Japanese population.	Ulcerative colitis	376 Japanese ancestry cases, 934 Japanese ancestry controls	376 Japanese ancestry cases, 1,097 Japanese ancestry controls	6p21.32	BTNL2	rs9268480-G	0.91	3E-6		1.82	[1.43-2.33]	Illumina [513923]	N
613	chr6_mann_hap4	3706790	3706791	rs2076529	32766473	Yoshida K	2020-05-19	Hepatol Commun	Genome-Wide Association Study of Lean Nonalcoholic Fatty Liver Disease Suggests Human Leukocyte Antigen as a Novel Candidate Locus.	Lean nonalcoholic fatty liver disease	275 Japanese ancestry cases, 1,411 Japanese ancestry controls	NA	6p21.32	NR	rs2076529-?	NR	2E-7		1.66	[1.37-2.00]	Affymetrix [NR]	N
613	chr6_mann_hap4	3706790	3706791	rs2076529	20935629	Heid IM	2010-10-10	Nat Genet	Meta-analysis identifies 13 new loci associated with waist-hip ratio and reveals sexual dimorphism in the genetic basis of fat distribution.	Waist-hip ratio	Up to 77,167 European ancestry individuals	Up to 113,636 European ancestry individuals	6p21.32	BTNL2	rs2076529-C	0.43	4E-7		0.02	[NR] unit increase	Affymetrix, Illumina, Perlegen [up to 2850269] (imputed)	N
613	chr6_mann_hap4	3709253	3709254	rs4248166	29534301	Nishida N	2018-03-13	Hepatology	Key HLA-DRB1-DQB1 haplotypes and role of the BTNL2 gene for response to a hepatitis B vaccine.	Response to hepatitis B vaccine	107 Japanese ancestry low responder individuals, 351 Japanese ancestry intermediate responder individuals, 735 Japanese ancestry high responder individuals	NA	6p21.32	BTNL2	rs4248166-?		1E-12		0.124	unit decrease	Affymetrix [427664]	N
613	chr6_mann_hap4	3709253	3709254	rs4248166	26819262	Zhou Y	2016-01-27	Mult Scler	Genetic loci for Epstein-Barr virus nuclear antigen-1 are associated with risk of multiple sclerosis.	Epstein Barr virus nuclear antigen 1 IgG levels	1,243 parents and up to 2,356 children from 992 families, 1,956 Mexican American individuals		6p21.32	NR	rs4248166-T		9E-11	(Mexican American)	0.16	unit decrease	Illumina [up to 2428201] (imputed)	N
613	chr6_mann_hap4	3709253	3709254	rs4248166	26819262	Zhou Y	2016-01-27	Mult Scler	Genetic loci for Epstein-Barr virus nuclear antigen-1 are associated with risk of multiple sclerosis.	Epstein Barr virus nuclear antigen 1 IgG levels	1,243 parents and up to 2,356 children from 992 families, 1,956 Mexican American individuals		6p21.32	NR	rs4248166-T		1E-9		0.16	unit decrease	Illumina [up to 2428201] (imputed)	N
613	chr6_mann_hap4	3709851	3709852	rs3117116	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein BGLAP	5,367 Icelandic ancestry individuals	NA	6p21.32		rs3117116-G	0.2246	5E-20		0.208543	[0.16-0.25] unit decrease	Illumina [7506463] (imputed)	N
613	chr6_mann_hap4	3710921	3710922	rs3817963	27501781	Shiraishi K	2016-08-09	Nat Commun	Association of variations in HLA class II and other loci with susceptibility to EGFR-mutated lung adenocarcinoma.	EGFR mutation-positive lung adenocarcinoma	663 Japanese ancestry cases, 4,367 Japanese ancestry controls	2,510 Japanese ancestry cases, 10,791 Japanese ancestry controls	6p21.32	BTNL2	rs3817963-G	0.316	1E-16		1.29	[1.21-1.37]	Illumina [NR] (imputed)	N
613	chr6_mann_hap4	3710921	3710922	rs3817963	23472185	Mero IL	2013-03-05	PLoS One	Oligoclonal band status in Scandinavian multiple sclerosis patients is associated with specific genetic risk alleles.	Multiple sclerosis (OCB status)	1,367 European ancestry OCB positive cases, 161 European ancestry OCB negative cases, 428 European ancestry controls	NA	6p21.32	BTNL2	rs3817963-?	NR	8E-6	(OCB positive vs. controls)	1.52	[1.27-1.79]	Illumina [495970]	N
613	chr6_mann_hap4	3710921	3710922	rs3817963	23472185	Mero IL	2013-03-05	PLoS One	Oligoclonal band status in Scandinavian multiple sclerosis patients is associated with specific genetic risk alleles.	Multiple sclerosis (OCB status)	1,367 European ancestry OCB positive cases, 161 European ancestry OCB negative cases	3,029 European ancestry OCB positive cases, 374 European ancestry OCB negative cases	6p21.32	BTNL2	rs3817963-?	NR	6E-10		1.61	[1.38-1.87]	Illumina [495970]	N
613	chr6_mann_hap4	3710921	3710922	rs3817963	23321320	Urabe Y	2013-01-12	J Hepatol	A genome-wide association study of HCV-induced liver cirrhosis in the Japanese population identifies novel susceptibility loci at the MHC region.	Hepatitis C induced liver cirrhosis	682 Japanese ancestry cases, 1,045 Japanese ancestry controls	936 Japanese ancestry cases, 3,809 Japanese ancestry controls	6p21.32	BTNL2	rs3817963-A	0.315	1E-8		1.3	[1.18-1.42]	Illumina [431618]	N
613	chr6_mann_hap4	3710921	3710922	rs3817963	22797724	Shiraishi K	2012-07-15	Nat Genet	A genome-wide association study identifies two new susceptibility loci for lung adenocarcinoma in the Japanese population.	Lung adenocarcinoma	1,695 Japanese ancestry cases, 5,333 Japanese ancestry controls	4,334 Japanese ancestry cases, 8,202 Japanese ancestry controls	6p21.32	BTNL2	rs3817963-G	0.318	3E-10		1.18	[1.12-1.24]	Illumina [538166]	N
613	chr6_mann_hap4	3711403	3711404	rs9268485	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	BTNL2	rs9268485-C	NR	1E-22		0.0275591	[0.022-0.033] unit decrease	Affymetrix [319769] (imputed)	N
613	chr6_mann_hap4	3711403	3711404	rs9268485	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	BTNL2	rs9268485-C	NR	2E-12		0.0220667	[0.016-0.028] unit decrease	Affymetrix [323858] (imputed)	N
613	chr6_mann_hap4	3711403	3711404	rs9268485	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	BTNL2	rs9268485-C	NR	4E-22		0.0271651	[0.022-0.033] unit decrease	Affymetrix [319769] (imputed)	N
613	chr6_mann_hap4	3711403	3711404	rs9268485	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	BTNL2	rs9268485-C	NR	3E-11		0.0208559	[0.015-0.027] unit decrease	Affymetrix [127266] (imputed)	N
613	chr6_mann_hap4	3711403	3711404	rs9268485	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	BTNL2	rs9268485-C	NR	3E-13		0.0204722	[0.015-0.026] unit increase	Affymetrix [321016] (imputed)	N
613	chr6_mann_hap4	3711403	3711404	rs9268485	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	BTNL2	rs9268485-C	NR	2E-12		0.0216048	[0.016-0.028] unit increase	Affymetrix [323123] (imputed)	N
613	chr6_mann_hap4	3711405	3711406	rs9268486	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs9268486-T	0.248	8E-27	(conditional)	1.384	[1.33-1.44]	Illumina [11270530] (imputed)	N
613	chr6_mann_hap4	3712346	3712347	rs3763305	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	6p21.32		rs3763305-G	0.949	4E-9				Affymetrix [10369434] (imputed)	N
613	chr6_mann_hap4	3712346	3712347	rs3763305	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.32	BTNL2	rs3763305-A	0.051434	4E-15		0.041934814	[0.031-0.052] unit decrease	Affymetrix [93095623] (imputed)	N
613	chr6_mann_hap4	3713445	3713446	rs9461741	25569183	Vijai J	2015-01-08	Nat Commun	A genome-wide association study of marginal zone lymphoma shows association to the HLA region.	Marginal zone lymphoma	825 European ancestry cases, 6,221 European ancestry controls	456 European ancestry cases, 906 European ancestry controls	6p21.32	BTNL2	rs9461741-C	0.018	4E-15		2.66	[2.08-3.39]	Illumina [611856]	N
613	chr6_mann_hap4	3713474	3713475	rs2076525	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	BTNL2	rs2076525-C	NR	9E-15		0.0237827	[0.018-0.03] unit increase	Affymetrix [321169] (imputed)	N
613	chr6_mann_hap4	3713693	3713694	rs2076523	29903748	Debiec H	2018-06-14	J Am Soc Nephrol	Transethnic, Genome-Wide Analysis Reveals Immune-Related Risk Alleles and Phenotypic Correlates in Pediatric Steroid-Sensitive Nephrotic Syndrome.	Childhood steroid-sensitive nephrotic syndrome	56 African cases, 454 African controls	NA	6p21.32	BTNL2	rs2076523-?	NR	2E-9		4.8	[2.9-7.9]	Illumina [at least 7529344] (imputed)	N
613	chr6_mann_hap4	3716043	3716044	rs10947260	28369058	Folkersen L	2017-04-03	PLoS Genet	Mapping of 79 loci for 83 plasma protein biomarkers in cardiovascular disease.	Blood protein levels in cardiovascular risk	3,394 European ancestry individuals	2,639 individuals	6p21.32	NOTCH4, AGER, ATF6B	rs10947260-C	0.1	6E-9		0.25	unit increase	Illumina [5270624] (imputed)	N
613	chr6_mann_hap4	3716090	3716091	rs10947261	23850713	Yang SK	2013-07-14	Gut	Genome-wide association study of Crohn's disease in Koreans revealed three new susceptibility loci and common attributes of genetic susceptibility across ethnic populations.	Crohn's disease	532 Korean ancestry cases, 733 Korean ancestry controls	1,779 Korean ancestry cases, 1,709 Korean ancestry controls	6p21.32	HLA-DRA, HLA-DRB5, BTNL2, HLA-DRB1, HLA-DQA1	rs10947261-T	0.294	3E-12		1.36	[1.25-1.49]	Illumina [5664371] (imputed)	N
613	chr6_mann_hap4	3716170	3716171	rs10947262	20305777	Nakajima M	2010-03-18	PLoS One	New sequence variants in HLA class II/III region associated with susceptibility to knee osteoarthritis identified by genome-wide association study.	Knee osteoarthritis	899 Japanese ancestry cases, 3,396 Japanese ancestry controls	167 Japanese ancestry cases, 347 Japanese ancestry controls, 813 European ancestry  cases, 1,071 European ancestry controls,	6p21.32	HLA-DQA2, HLA-DQB1, BTNL2	rs10947262-T	0.42	5E-9		1.31	[1.20-1.44]	Illumina [459393]	N
613	chr6_mann_hap4	3716558	3716559	rs3806156	20410501	Jin Y	2010-04-21	N Engl J Med	Variant of TYR and autoimmunity susceptibility loci in generalized vitiligo.	Vitiligo	1,392 European ancestry cases, 2,629 European ancestry controls	647 European ancestry cases, 1,056 European ancestry controls, 183 European ancestry trios, 1,383 European ancestry individuals from 332 families	6p21.32	HLA-DRA, BTNL2, HLA-DQA1	rs3806156-T	0.37	7E-19		1.42	[1.32-1.54]	Illumina [520460]	N
613	chr6_mann_hap4	3716661	3716662	rs3806157	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	BTNL2	rs3806157-G	NR	4E-8		0.0162252	[0.01-0.022] unit increase	Affymetrix [321114] (imputed)	N
613	chr6_mann_hap4	3717454	3717455	rs2395158	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	6p21.32	BTNL2	rs2395158-A	0.830652	5E-40		0.0345684	[0.029-0.04] unit increase	Affymetrix [NR] (imputed)	N
613	chr6_mann_hap4	3718830	3718831	rs3763309	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls	NA	6p21.32	HLA-DRA, BTNL2	rs3763309-A	0.21	1E-18		0.13	[0.091-0.169] unit increase	Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
613	chr6_mann_hap4	3718830	3718831	rs3763309	24449572	Orozco G	2014-01-01	Arthritis Rheumatol	Novel rheumatoid arthritis susceptibility locus at 22q12 identified in an extended UK genome-wide association study.	Rheumatoid arthritis	3,034 European ancestry cases, 5,271 European ancestry controls	4,726 European ancestry cases, 2,625 European ancestry controls	6p21.32	HLA-DRB1	rs3763309-?		2E-124		2.3	[2.14-2.46]	Affymetrix, Illumina [1831729] (imputed)	N
613	chr6_mann_hap4	3719033	3719034	rs3763311	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Cancer	56,634 White British ancestry cases, 218,196 White British ancestry controls	NA	6p21.32		rs3763311-?	NR	1E-5		0.967842	[0.95-0.98]	NR [688737]	N
613	chr6_mann_hap4	3719205	3719206	rs3763312	26039976	Wei Z	2015-06-17	Sci Rep	Genome-Wide Association Studies of HIV-1 Host Control in Ethnically Diverse Chinese Populations.	HIV-1 viral setpoint	326 Han Chinese ancestry cases, 58 Dai Chinese ancestry cases, 40 Jingpo Chinese ancestry cases, 83 Uygur Chinese ancestry cases, 11 Hui Chinese ancestry cases, 20 East Asian cases	NA	6p21.32	BTNL2, HLA-DRA	rs3763312-A	0.15	6E-6	(Han)	0.4002	unit decrease	Illumina [up to 528294]	N
613	chr6_mann_hap4	3719217	3719218	rs17208853	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Skin reflectance (Melanin index)	720 South Asian ancestry individuals		6p21.32	NR	rs17208853-C	NR	8E-6		0.649209	[0.36-0.93] unit decrease	Affymetrix, Illumina [at least 398118] (imputed)	N
613	chr6_mann_hap4	3719328	3719329	rs3763313	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.32		rs3763313-C	0.17885300000000004	1E-26		1.0591807	[1.05-1.08]	Affymetrix, Illumina [9851866] (imputed)	N
613	chr6_mann_hap4	3719328	3719329	rs3763313	20041166	Fellay J	2009-12-24	PLoS Genet	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	6p21.32	NOTCH4, BTNL2	rs3763313-?	NR	2E-6	(progression)			Illumina [NR]	N
613	chr6_mann_hap4	3719374	3719375	rs9268500	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (drugs affecting bone structure and mineralization)	7,870 European ancestry cases, 207,798 European ancestry controls	NA	6p21.32	BTNL2	rs9268500-T	0.0508279	2E-8		0.20306516	[0.13-0.27] unit increase	Affymetrix [7288503] (imputed)	N
613	chr6_mann_hap4	3719645	3719646	rs3763317	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	BTNL2	rs3763317-T	NR	1E-12		0.0200715	[0.015-0.026] unit increase	Affymetrix [319769] (imputed)	N
613	chr6_mann_hap4	3719645	3719646	rs3763317	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	BTNL2	rs3763317-T	NR	1E-10		0.0202983	[0.014-0.026] unit increase	Affymetrix [323858] (imputed)	N
613	chr6_mann_hap4	3719645	3719646	rs3763317	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	BTNL2	rs3763317-T	NR	6E-12		0.0194272	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
613	chr6_mann_hap4	3719645	3719646	rs3763317	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	BTNL2	rs3763317-T	NR	2E-9		0.0188282	[0.013-0.025] unit increase	Affymetrix [127266] (imputed)	N
613	chr6_mann_hap4	3719645	3719646	rs3763317	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	BTNL2	rs3763317-T	NR	2E-14		0.0235125	[0.017-0.03] unit decrease	Affymetrix [323123] (imputed)	N
613	chr6_mann_hap4	3719645	3719646	rs3763317	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	BTNL2	rs3763317-T	NR	2E-13		0.0209669	[0.015-0.027] unit increase	Affymetrix [321169] (imputed)	N
613	chr6_mann_hap4	3719645	3719646	rs3763317	23028341	Yang X	2012-09-13	PLoS Genet	Genome-wide association study for serum complement C3 and C4 levels in healthy Chinese subjects.	Complement C3 and C4 levels	1,999 Han Chinese ancestry male individuals	1,496 Han Chinese ancestry male individuals	6p21.32	HLA-DRB	rs3763317-C	0.37	9E-66	(Serum level of C4)	0.12	[0.10-0.14] g/L increase	Illumina [1940245] (imputed)	N
613	chr6_mann_hap4	3719910	3719911	rs116835963	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs116835963-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
613	chr6_mann_hap4	3720265	3720266	rs9268505	33713768	Akenroye AT	2021-03-10	J Allergy Clin Immunol	Genome-wide Association study of Asthma, Total IgE, and Lung function in a Cohort of Peruvian Children.	Serum IgE levels	727 Peruvian individuals	NA	6p21.32		rs9268505-?	NR	6E-8		0.211	unit increase	Illumina [NR] (imputed)	N
613	chr6_mann_hap4	3721453	3721454	rs3129962	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	6p21.32	BTNL2	rs3129962-G	0.870649	8E-18		0.0243898	[0.019-0.03] unit increase	Affymetrix [NR] (imputed)	N
613	chr6_mann_hap4	3721559	3721560	rs9268516	33328473	Ahluwalia TS	2020-12-16	Nat Commun	FUT2-ABO epistasis increases the risk of early childhood asthma and Streptococcus pneumoniae respiratory illnesses.	Childhood asthma with severe exacerbations	2,866 European ancestry cases,  65,415 European ancestry controls	NA	6p21.32	NR	rs9268516-A	NR	5E-10		0.1936	[0.13-0.25] unit increase	Illumina [up to 525976] (imputed)	N
613	chr6_mann_hap4	3721559	3721560	rs9268516	23028483	Ramasamy A	2012-09-28	PLoS One	Genome-wide association studies of asthma in population-based cohorts confirm known and suggested loci and identify an additional association near HLA.	Asthma	1,716 European ancestry cases, 16,888 European ancestry controls	4,035 European ancestry cases, 11,251 European ancestry controls	6p21.32	HLA-DRA, BTNL2	rs9268516-T	0.24	1E-8		1.15	[1.10-1.21]	Affymetrix, Illumina [~ 2200000] (imputed)	N
613	chr6_mann_hap4	3721806	3721807	rs9405098	23321320	Urabe Y	2013-01-12	J Hepatol	A genome-wide association study of HCV-induced liver cirrhosis in the Japanese population identifies novel susceptibility loci at the MHC region.	Hepatitis C induced liver cirrhosis	682 Japanese ancestry cases, 1,045 Japanese ancestry controls	936 Japanese ancestry cases, 3,809 Japanese ancestry controls	6p21.32	intergenic	rs9405098-A	0.253	1E-10		1.37	[1.24-1.51]	Illumina [431618]	N
613	chr6_mann_hap4	3722977	3722978	rs9380294	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p21.32	BTNL2, HLA-DRA	rs9380294-C	0.01	7E-6	(EA)	4.76	[2.25-10.07]	Illumina [up to 547389]	N
613	chr6_mann_hap4	3723805	3723806	rs7759742	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI in non-smokers	75,379 European ancestry women, 45,811 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	6p21.32	BTNL2	rs7759742-A	0.5117	1E-7		0.0144	[0.0091-0.0197] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
613	chr6_mann_hap4	3723805	3723806	rs7759742	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (joint analysis main effects and smoking interaction)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	6p21.32	BTNL2	rs7759742-A	0.5117	1E-8				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
613	chr6_mann_hap4	3723805	3723806	rs7759742	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	6p21.32	BTNL2	rs7759742-A	0.5117	3E-6	(men)	0.0248	[0.014-0.035] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
613	chr6_mann_hap4	3723805	3723806	rs7759742	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	6p21.32	BTNL2	rs7759742-A	0.5117	1E-9		0.0217	[0.015-0.029] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
613	chr6_mann_hap4	3723805	3723806	rs7759742	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex x age interaction (4df test)	up to 43,776 European ancestry men aged <50, up to 50,526 European ancestry women aged <50, up to 69,944 European ancestry men aged >50, up to 88,129 European ancestry women aged >50	NA	6p21.32	NR	rs7759742-A	0.509001212874385	2E-12				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
613	chr6_mann_hap4	3723805	3723806	rs7759742	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p21.32	BTNL2	rs7759742-A	0.517	2E-11		0.0224	[0.016-0.029] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
613	chr6_mann_hap4	3723805	3723806	rs7759742	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p21.32	BTNL2	rs7759742-A	0.5158	5E-8	(women)	0.0241	[0.015-0.033] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
613	chr6_mann_hap4	3723805	3723806	rs7759742	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p21.32	BTNL2	rs7759742-A	0.5154	4E-6	(men)	0.0223	[0.013-0.032] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
613	chr6_mann_hap4	3723805	3723806	rs7759742	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p21.32	BTNL2	rs7759742-A	0.511	4E-11	(EA)	0.0226	[0.016-0.029] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
613	chr6_mann_hap4	3723805	3723806	rs7759742	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p21.32	BTNL2	rs7759742-A	0.5107	2E-7	(EA, women)	0.0237	[0.015-0.033] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
613	chr6_mann_hap4	3723805	3723806	rs7759742	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p21.32	BTNL2	rs7759742-A	0.5106	5E-6	(EA, men)	0.0226	[0.013-0.032] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
613	chr6_mann_hap4	3725127	3725128	rs4959027	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	Blood glucose levels	291,107 British ancestry individuals	NA	6p21.32	TBC1D22B	rs4959027-A	0.234405	5E-6		0.00399988	[0.0023-0.0057] unit decrease	Affymetrix [9463307] (imputed)	N
613	chr6_mann_hap4	3725127	3725128	rs4959027	23449627	Cousminer DL	2013-02-27	Hum Mol Genet	Genome-wide association and longitudinal analyses reveal genetic loci linking pubertal height growth, pubertal timing and childhood adiposity.	Pubertal anthropometrics	up to 5,043 European ancestry males, up to 5,756 European ancestry females	NA	6p21.32	TAP2, HLA-DRA	rs4959027-G	0.82	9E-7	(Pubertal growth)	0.09	[0.057-0.123] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
613	chr6_mann_hap4	3725215	3725216	rs4959028	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Effector Memory CD4+ T cell %CD4+ T cell	3,427 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs4959028-G	0.22877	3E-10		0.2111	[0.15-0.28] unit increase	Illumina [18349913] (imputed)	N
613	chr6_mann_hap4	3725285	3725286	rs6930571	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.32	BTNL2	rs6930571-T	0.1659	2E-8		0.0561	[0.037-0.076] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
613	chr6_mann_hap4	3725650	3725651	rs6912701	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.32	NR	rs6912701-T	0.014	6E-7	(women)	0.704901	[0.43-0.98] unit increase	Affymetrix [up to 8900000] (imputed)	N
613	chr6_mann_hap4	3725650	3725651	rs6912701	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.32	NR	rs6912701-T	0.014	3E-9		0.454746	[0.31-0.6] unit increase	Affymetrix [up to 8900000] (imputed)	N
613	chr6_mann_hap4	3726604	3726605	rs9268541	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6p21.32		rs9268541-C	0.054698	1E-10		0.03155108	[0.022-0.041] unit increase	Affymetrix [93095623] (imputed)	N
613	chr6_mann_hap4	3726969	3726970	rs72847996	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs72847996-A	0.19	4E-8		4.04	[3.10-5.28]	Illumina [NR] (imputed)	N
613	chr6_mann_hap4	3727010	3727011	rs80032720	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	IgA nephropathy	1,180 East Asian ancestry cases, 899 East Asian ancestry controls	NA			rs80032720-A	NR	9E-8		0.524129	[0.33-0.72] unit decrease	Illumina [NR] (imputed)	N
613	chr6_mann_hap4	3727476	3727477	rs3135377	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	BTNL2	rs3135377-A	NR	2E-8		0.0200714	[0.013-0.027] unit increase	Affymetrix [323123] (imputed)	N
613	chr6_mann_hap4	3729886	3729887	rs2395163	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	BTNL2	rs2395163-C	NR	7E-9		0.0197156	[0.013-0.026] unit increase	Affymetrix [321114] (imputed)	N
613	chr6_mann_hap4	3729886	3729887	rs2395163	22451204	Pankratz N	2012-03-01	Ann Neurol	Meta-analysis of Parkinson's disease: identification of a novel locus, RIT2.	Parkinson's disease	4,238 European ancestry cases, 4,239 European ancestry controls	3,738 European ancestry cases, 2,111 European ancestry controls	6p21.32	LOC642072	rs2395163-?	NR	3E-11		1.24	[NR]	Illumina [2500000] (imputed)	N
613	chr6_mann_hap4	3730352	3730353	rs2395166	33736632	Zeng Z	2021-03-18	BMC Med Genomics	Genome-wide association study identifies new loci associated with risk of HBV infection and disease progression.	Persistent hepatitis B virus infection	587 Chinese ancestry persistent cases, 275 Chinese ancestry clearance controls	NA	6p21.32	HLA-DRA	rs2395166-C	0.2182	1E-7		0.4534	NR	Affymetrix [607153]	N
613	chr6_mann_hap4	3730352	3730353	rs2395166	28424481	Sugiura-Ogasawara M	2017-04-20	J Hum Genet	The first genome-wide association study identifying new susceptibility loci for obstetric antiphospholipid syndrome.	Obstetric antiphospholipid syndrome	115 Japanese ancestry female cases, 419 Japanese ancestry male and female controls	NA	6p21.32	HLA-DRA	rs2395166-T	0.71	3E-6		2.564103	[1.69-3.85]	Affymetrix [426344]	N
613	chr6_mann_hap4	3730394	3730395	rs9461744	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4+ CD8dim T cell Absolute Count	3,652 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9461744-G	0.21272	7E-12		0.2434	[0.17-0.31] unit increase	Illumina [18427348] (imputed)	N
613	chr6_mann_hap4	3730394	3730395	rs9461744	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4+ CD8dim T cell %lymphocyte	3,668 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9461744-G	0.21247	8E-19		0.3015	[0.24-0.37] unit increase	Illumina [18430788] (imputed)	N
613	chr6_mann_hap4	3730394	3730395	rs9461744	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4+ CD8dim T cell %leukocyte	3,668 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9461744-G	0.21247	1E-16		0.2827	[0.22-0.35] unit increase	Illumina [18430788] (imputed)	N
613	chr6_mann_hap4	3730623	3730624	rs2213581	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	6p21.32	BTNL2	rs2213581-T	0.2346	2E-11		0.002	[0.0014-0.0026] unit increase	Affymetrix [15275733] (imputed)	N
613	chr6_mann_hap4	3731220	3731221	rs116869525	26151496	Chen PL	2015-07-07	Nat Commun	Genetic determinants of antithyroid drug-induced agranulocytosis by human leukocyte antigen genotyping and genome-wide association study.	Thionamide-induced agranulocytosis in Graves' disease	21 East Asian ancestry cases with agranulocytosis, 662 East Asian ancestry cases without agranulocytosis	21 East Asian ancestry cases with agranulocytosis, 546 East Asian ancestry cases without agranulocytosis	6p21.32	HLA-DRB1*08:03	rs116869525-T	0.083	1E-8	(trend)	4.16	[2.50-6.90] (allelic)	Affymetrix [522980]	N
613	chr6_mann_hap4	3731332	3731333	rs3135365	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PRTN3	5,361 Icelandic ancestry individuals	NA	6p21.32		rs3135365-C	0.2736	5E-56		0.319492	[0.28-0.36] unit decrease	Illumina [7506463] (imputed)	N
613	chr6_mann_hap4	3731332	3731333	rs3135365	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p21.32	BTNL2	rs3135365-C	0.022	9E-6		0.202	[0.11-0.29] unit increase	Affymetrix, Illumina [7374092] (imputed)	N
613	chr6_mann_hap4	3731382	3731383	rs9268557	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.32		rs9268557-T	0.525	2E-25				Affymetrix [10369434] (imputed)	N
613	chr6_mann_hap4	3731382	3731383	rs9268557	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.32		rs9268557-T	0.525	3E-16				Affymetrix [10369434] (imputed)	N
613	chr6_mann_hap4	3731382	3731383	rs9268557	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.32		rs9268557-T	0.525	1E-45				Affymetrix [10369434] (imputed)	N
613	chr6_mann_hap4	3731382	3731383	rs9268557	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	BTNL2	rs9268557-C	NR	1E-12		0.0202435	[0.015-0.026] unit increase	Affymetrix [321169] (imputed)	N
613	chr6_mann_hap4	3731382	3731383	rs9268557	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p21.32	NR	rs9268557-?	NR	4E-15		0.0947	[0.071-0.118] unit increase	Illumina [at least 560000] (imputed)	N
613	chr6_mann_hap4	3731382	3731383	rs9268557	26272072	Jiang X	2015-08-13	Rheumatology (Oxford)	An Immunochip-based interaction study of contrasting interaction effects with smoking in ACPA-positive versus ACPA-negative rheumatoid arthritis.	ACPA-positive rheumatoid arthritis (smoking interaction)	340 European ancestry never-smoker cases, 493 European ancestry ever-smoker cases, 746 European ancestry never-smoker controls, 994 European ancestry ever-smoker controls	187 European ancestry never-smoker cases, 421 European ancestry ever-smoker cases, 461 European ancestry never-smoker controls, 447 European ancestry ever-smoker controls	6p21.32	NR	rs9268557-?	NR	3E-10	(adjusted for HLA shared epitope)	2.5	[1.92-3.7]	Illumina [133648] (imputed)	N
613	chr6_mann_hap4	3731468	3731469	rs9268559	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	6p21.32		rs9268559-?	NR	5E-8				Affymetrix [NR] (imputed)	N
613	chr6_mann_hap4	3731468	3731469	rs9268559	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	6p21.32		rs9268559-G	0.023054	2E-12		0.054041814	[0.039-0.069] unit decrease	Affymetrix [93095623] (imputed)	N
613	chr6_mann_hap4	3731468	3731469	rs9268559	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.32	NR	rs9268559-G	0.013	4E-7	(women)	0.762177	[0.47-1.05] unit increase	Affymetrix [up to 8900000] (imputed)	N
613	chr6_mann_hap4	3731468	3731469	rs9268559	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.32	NR	rs9268559-G	0.013	2E-8		0.442409	[0.29-0.6] unit increase	Affymetrix [up to 8900000] (imputed)	N
613	chr6_mann_hap4	3731589	3731590	rs9268560	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	BTNL2	rs9268560-C	NR	5E-17		0.023445	[0.018-0.029] unit decrease	Affymetrix [319769] (imputed)	N
613	chr6_mann_hap4	3731589	3731590	rs9268560	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	BTNL2	rs9268560-C	NR	1E-10		0.0201058	[0.014-0.026] unit decrease	Affymetrix [323858] (imputed)	N
613	chr6_mann_hap4	3731589	3731590	rs9268560	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	BTNL2	rs9268560-C	NR	1E-15		0.0224411	[0.017-0.028] unit decrease	Affymetrix [319769] (imputed)	N
613	chr6_mann_hap4	3731589	3731590	rs9268560	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	BTNL2	rs9268560-C	NR	4E-9		0.0183123	[0.012-0.024] unit decrease	Affymetrix [127266] (imputed)	N
613	chr6_mann_hap4	3731589	3731590	rs9268560	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	BTNL2	rs9268560-C	NR	3E-15		0.0220981	[0.017-0.028] unit increase	Affymetrix [321016] (imputed)	N
613	chr6_mann_hap4	3731589	3731590	rs9268560	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	BTNL2	rs9268560-C	NR	1E-17		0.0260901	[0.02-0.032] unit increase	Affymetrix [323123] (imputed)	N
613	chr6_mann_hap4	3731620	3731621	rs28732209	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	334,468 European ancestry, NR ancestry individuals	NA	6p21.32		rs28732209-?	NR	5E-8				Affymetrix [NR] (imputed)	N
613	chr6_mann_hap4	3731622	3731623	rs3135364	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C4A;C4B	5,353 Icelandic ancestry individuals	NA	6p21.32		rs3135364-G	0.2232	3E-39		0.289407	[0.25-0.33] unit decrease	Illumina [7506463] (imputed)	N
613	chr6_mann_hap4	3731622	3731623	rs3135364	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	6p21.32	NR	rs3135364-G	0.221478	4E-13		0.0590942	[0.043-0.075] unit increase	Affymetrix [17914406] (imputed)	N
613	chr6_mann_hap4	3731725	3731726	rs3135363	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	BTNL2	rs3135363-G	NR	2E-11		0.0237256	[0.017-0.031] unit decrease	Affymetrix [323858] (imputed)	N
613	chr6_mann_hap4	3731725	3731726	rs3135363	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	BTNL2	rs3135363-G	NR	1E-10		0.022911	[0.016-0.03] unit decrease	Affymetrix [127266] (imputed)	N
613	chr6_mann_hap4	3731725	3731726	rs3135363	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on CD33- HLA DR+	1,635 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs3135363-G	0.17311	2E-13		0.3649	[0.27-0.46] unit increase	Illumina [16999305] (imputed)	N
613	chr6_mann_hap4	3731725	3731726	rs3135363	24282030	Pan L	2013-11-28	Hum Mol Genet	A genome-wide association study identifies polymorphisms in the HLA-DR region associated with non-response to hepatitis B vaccination in Chinese Han populations.	Hepatitis B vaccine response	108 Han Chinese ancestry high-responder cases, 77 Han Chinese ancestry non-responder controls	1,336 Han Chinese ancestry high-responder cases, 420 Han Chinese ancestry non-responder controls	6p21.32	HLA-DR	rs3135363-?	NR	8E-7		1.51	[1.28-1.78]	Illumina [588026]	N
613	chr6_mann_hap4	3731725	3731726	rs3135363	23321320	Urabe Y	2013-01-12	J Hepatol	A genome-wide association study of HCV-induced liver cirrhosis in the Japanese population identifies novel susceptibility loci at the MHC region.	Hepatitis C induced liver cirrhosis	682 Japanese ancestry cases, 1,045 Japanese ancestry controls	936 Japanese ancestry cases, 3,809 Japanese ancestry controls	6p21.32	intergenic	rs3135363-C	0.702	1E-10		1.37	[1.24-1.51]	Illumina [431618]	N
613	chr6_mann_hap4	3731725	3731726	rs3135363	21764829	Png E	2011-07-15	Hum Mol Genet	A genome-wide association study of hepatitis B vaccine response in an Indonesian population reveals multiple independent risk variants in the HLA region.	Hepatitis B vaccine response	1,683 Indonesian ancestry individuals	1,931 Indonesian ancestry individuals	6p21.32	HLA-DR	rs3135363-?	NR	7E-22		1.53	[1.35-1.74]	Illumina [455508]	N
613	chr6_mann_hap4	3732409	3732410	rs2894255	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	BTNL2	rs2894255-T	NR	2E-17		0.0362414	[0.028-0.045] unit decrease	Affymetrix [323858] (imputed)	N
613	chr6_mann_hap4	3732409	3732410	rs2894255	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	BTNL2	rs2894255-T	NR	7E-16		0.0344273	[0.026-0.043] unit decrease	Affymetrix [127266] (imputed)	N
613	chr6_mann_hap4	3732409	3732410	rs2894255	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p21.32	BTNL2	rs2894255-T	NR	2E-11		0.0284523	[0.02-0.037] unit decrease	Affymetrix [323858] (imputed)	N
613	chr6_mann_hap4	3732655	3732656	rs3135359	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p21.32	HLA-DRADQA1	rs3135359-C	0.71	9E-21		1.21	[1.18-1.24]	Illumina [at least 560000] (imputed)	N
613	chr6_mann_hap4	3734821	3734822	rs6935999	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.32	NR	rs6935999-A	0.011	8E-8	(women)	0.839311	[0.54-1.14] unit increase	Affymetrix [up to 8900000] (imputed)	N
613	chr6_mann_hap4	3734821	3734822	rs6935999	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.32	NR	rs6935999-A	0.011	3E-11		0.563282	[0.4-0.73] unit increase	Affymetrix [up to 8900000] (imputed)	N
613	chr6_mann_hap4	3734941	3734942	rs3135353	33941608	Khan A	2021-05-03	J Am Soc Nephrol	Medical Records-Based Genetic Studies of the Complement System.	Complement C4 levels	3,247 European ancestry individuals, 600 African ancestry individuals, 151 East Asian ancestry individuals	NA	6p21.32	C4	rs3135353-C	0.15	2E-33	(EA)	0.4	[0.34-0.45] unit increase	NR [NR] (imputed)	N
613	chr6_mann_hap4	3734941	3734942	rs3135353	33941608	Khan A	2021-05-03	J Am Soc Nephrol	Medical Records-Based Genetic Studies of the Complement System.	Complement C4 levels	3,247 European ancestry individuals, 600 African ancestry individuals, 151 East Asian ancestry individuals	NA	6p21.32	C4	rs3135353-C	0.12	5E-35		0.4	[0.34-0.45] unit increase	NR [NR] (imputed)	N
613	chr6_mann_hap4	3735045	3735046	rs3135350	24962563	Rubicz R	2014-07-01	Genet Epidemiol	Genome-wide genetic and transcriptomic investigation of variation in antibody response to dietary antigens.	Food antigen IgG levels	1,367 Mexican Americans from 63 families	NA	6p21.32	NOTCH4, HLA-DRA, BTNL2	rs3135350-G	0.046	9E-8	(Gliadin)	0.51	[NR] unit increase	Illumina [944565] (imputed)	N
613	chr6_mann_hap4	3737705	3737706	rs9268576	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p21.32	HLA-DRA	rs9268576-C	0.359	2E-8		0.111	[0.072-0.15] unit decrease	Affymetrix, Illumina [7374092] (imputed)	N
613	chr6_mann_hap4	3737705	3737706	rs9268576	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on CD33+ HLA DR+ CD14dim	1,578 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9268576-C	0.46709	3E-10		0.262	[0.18-0.34] unit decrease	Illumina [16958370] (imputed)	N
613	chr6_mann_hap4	3737705	3737706	rs9268576	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on CD33+ HLA DR+ CD14-	1,579 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9268576-C	0.46711	3E-20		0.3825	[0.3-0.46] unit decrease	Illumina [16961968] (imputed)	N
613	chr6_mann_hap4	3737720	3737721	rs2105903	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in diabetes	70,762 European ancestry individuals, 20,967 African American individuals	NA	6p21.32	HLA-DRA	rs2105903-A	0.838	4E-12		0.821	[0.59-1.05] unit increase	Affymetrix [NR] (imputed)	N
613	chr6_mann_hap4	3737790	3737791	rs3129843	26362759	Rothwell S	2015-09-11	Ann Rheum Dis	Dense genotyping of immune-related loci in idiopathic inflammatory myopathies confirms HLA alleles as the strongest genetic risk factor and suggests different genetic background for major clinical subgroups.	Idiopathic inflammatory myopathy	2,556 European ancestry cases, 15,651 European ancestry controls		6p21.32	HLA	rs3129843-G	0.11	9E-133		2.74	[2.53-2.97]	Illumina [90536]	N
613	chr6_mann_hap4	3737790	3737791	rs3129843	26362759	Rothwell S	2015-09-11	Ann Rheum Dis	Dense genotyping of immune-related loci in idiopathic inflammatory myopathies confirms HLA alleles as the strongest genetic risk factor and suggests different genetic background for major clinical subgroups.	Dermatomyositis or juvenile dermatomyositis	879 European dermatomyositis cases, 15,651 European juvenile dermatomyositis ancestry controls		6p21.32	HLA	rs3129843-G		2E-48		2.18	[1.97-2.42]	Illumina [90536]	N
613	chr6_mann_hap4	3738210	3738211	rs78566116	29782485	Rueger S	2018-05-21	PLoS Genet	Evaluation and application of summary statistic imputation to discover new height-associated loci.	Height	253,288 European ancestry individuals	336,474 European ancestry individuals	6p21.32	intergenic	rs78566116-T	0.0766992859032002	4E-12		0.011949114	unit decrease	NR [9276018] (imputed)	N
613	chr6_mann_hap4	3739373	3739374	rs3129849	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PRTN3	5,367 Icelandic ancestry individuals	NA	6p21.32		rs3129849-A	0.2684	2E-16		0.176044	[0.13-0.22] unit increase	Illumina [7506463] (imputed)	N
613	chr6_mann_hap4	3739848	3739849	rs3129852	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DRA	rs3129852-G	NR	3E-8		0.019398	[0.013-0.026] unit decrease	Affymetrix [319769] (imputed)	N
613	chr6_mann_hap4	3739927	3739928	rs17202717	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs17202717-T	0.2	9E-9		4.33	[3.31-5.67]	Illumina [NR] (imputed)	N
613	chr6_mann_hap4	3740712	3740713	rs3129853	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Prostate cancer	7,438 White British ancestry cases, 118,206 White British ancestry controls	NA	6p21.32		rs3129853-?	NR	2E-6		0.913903	[0.88-0.95]	NR [680312]	N
613	chr6_mann_hap4	3741251	3741252	rs4321864	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DRA	rs4321864-A	NR	1E-10		0.019351	[0.013-0.025] unit increase	Affymetrix [319769] (imputed)	N
613	chr6_mann_hap4	3741251	3741252	rs4321864	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DRA	rs4321864-A	NR	5E-10		0.0188026	[0.013-0.025] unit increase	Affymetrix [319769] (imputed)	N
613	chr6_mann_hap4	3741251	3741252	rs4321864	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DRA	rs4321864-A	NR	2E-11		0.0204042	[0.014-0.026] unit increase	Affymetrix [321169] (imputed)	N
613	chr6_mann_hap4	3741251	3741252	rs4321864	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on Hematopoietic Stem Cell	1,634 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs4321864-A	0.29062	4E-9		0.2523	[0.17-0.34] unit increase	Illumina [16999215] (imputed)	N
613	chr6_mann_hap4	3741251	3741252	rs4321864	26450422	DeLorenze GN	2015-10-08	J Infect Dis	Polymorphisms in HLA Class II Genes Are Associated With Susceptibility to Staphylococcus aureus Infection in a White Population.	Staphylococcus aureus infection	4,701 European ancestry cases, 45,344 European ancestry controls	NA	6p21.32	HLA-DRA	rs4321864-A	NR	9E-8		1.13	[NR]	Affymetrix [at least 584535] (imputed)	N
613	chr6_mann_hap4	3743003	3743004	rs3129859	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	6p21.32	NR	rs3129859-G	0.67	1E-12		1.06	[1.04-1.08]	Illumina [20370935] (imputed)	N
613	chr6_mann_hap4	3743003	3743004	rs3129859	28130311	Tan W	2017-01-27	Gut	Genome-wide association study identifies HLA-DR variants conferring risk of HBV-related acute-on-chronic liver failure.	Acute-on-chronic liver failure in hepatitis B	389 Chinese ancestry cases, 391 Chinese ancestry controls	901 Chinese ancestry cases,  1,686 Chinese ancestry controls	6p21.32	HLA-DQB1, HLA-DRA	rs3129859-C	0.15	7E-19		1.83	[1.60-2.09]	Affymetrix [654960]	N
613	chr6_mann_hap4	3743100	3743101	rs17496307	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs17496307-T	0.2	9E-9		4.33	[3.31-5.67]	Illumina [NR] (imputed)	N
613	chr6_mann_hap4	3743143	3743144	rs3129860	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CFTR	5,361 Icelandic ancestry individuals	NA	6p21.32		rs3129860-A	0.2255	1E-13		0.165583	[0.12-0.21] unit increase	Illumina [7506463] (imputed)	N
613	chr6_mann_hap4	3743143	3743144	rs3129860	23321320	Urabe Y	2013-01-12	J Hepatol	A genome-wide association study of HCV-induced liver cirrhosis in the Japanese population identifies novel susceptibility loci at the MHC region.	Hepatitis C induced liver cirrhosis	682 Japanese ancestry cases, 1,045 Japanese ancestry controls	936 Japanese ancestry cases, 3,809 Japanese ancestry controls	6p21.32	intergenic	rs3129860-A	0.231	1E-9		1.36	[1.22-1.49]	Illumina [431618]	N
613	chr6_mann_hap4	3743281	3743282	rs3135338	20159113	Jakkula E	2010-02-12	Am J Hum Genet	Genome-wide association study in a high-risk isolate for multiple sclerosis reveals associated variants in STAT3 gene.	Multiple sclerosis	68 Finland founder cases, 136 Finland founder controls	83 Finland founder cases, 365 Finland founder controls 3,285 European ancestry cases, 6,379 European ancestry controls, 1,202 cases, 3,399 controls	6p21.32	HLA	rs3135338-A	0.13	2E-25		3.43	[NR]	Illumina [297343]	N
613	chr6_mann_hap4	3743327	3743328	rs9268610	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on CD33dim HLA DR+ CD11b-	1,635 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9268610-C	0.23837	2E-14		0.3692	[0.28-0.46] unit decrease	Illumina [16999305] (imputed)	N
613	chr6_mann_hap4	3744953	3744954	rs9268615	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DRA	rs9268615-A	NR	5E-9		0.0185721	[0.012-0.025] unit decrease	Affymetrix [323123] (imputed)	N
613	chr6_mann_hap4	3745183	3745184	rs28732213	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs28732213-A	0.041	4E-80	(Ubiquitin carboxyl-terminal hydrolase 25, USP25.9215.117.3)	1.13	[1.01-1.25] unit increase	Affymetrix [10572788] (imputed)	N
613	chr6_mann_hap4	3746442	3746443	rs3129868	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	6p21.32	NR	rs3129868-?	NR	6E-10		0.077	[0.052-0.101] unit increase	Illumina [at least 560000] (imputed)	N
613	chr6_mann_hap4	3747930	3747931	rs9268628	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on HLA DR+ Natural Killer	2,971 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9268628-C	0.60641	2E-23		0.2999	[0.24-0.36] unit decrease	Illumina [17967059] (imputed)	N
613	chr6_mann_hap4	3748402	3748403	rs3129871	23472185	Mero IL	2013-03-05	PLoS One	Oligoclonal band status in Scandinavian multiple sclerosis patients is associated with specific genetic risk alleles.	Multiple sclerosis (OCB status)	1,367 European ancestry OCB positive cases, 161 European ancestry OCB negative cases, 428 European ancestry controls	NA	6p21.32	HLA-DRA	rs3129871-?	NR	1E-16	(OCB positive vs. controls)	1.98	[1.68-2.32]	Illumina [495970]	N
613	chr6_mann_hap4	3748402	3748403	rs3129871	23472185	Mero IL	2013-03-05	PLoS One	Oligoclonal band status in Scandinavian multiple sclerosis patients is associated with specific genetic risk alleles.	Multiple sclerosis (OCB status)	1,367 European ancestry OCB positive cases, 161 European ancestry OCB negative cases	3,029 European ancestry OCB positive cases, 374 European ancestry OCB negative cases	6p21.32	HLA-DRA	rs3129871-?	NR	6E-15		1.72	[1.59-1.86]	Illumina [495970]	N
613	chr6_mann_hap4	3748533	3748534	rs9268633	33143745	Andlauer TFM	2020-11-04	BMC Med	Treatment- and population-specific genetic risk factors for anti-drug antibodies against interferon-beta: a GWAS.	Neutralising antibody response to interferon beta therapy in multiple sclerosis (antibody titre; IFN?-1a subcutaneous and intramuscular)	up to 2,000 German and Swedish ancestry individuals	up to 757 German and Swedish ancestry individuals	6p21.32		rs9268633-A	0.39	1E-17		0.2	[-0.0392-0.0392] unit increase	Illumina [8550834] (imputed)	N
613	chr6_mann_hap4	3749361	3749362	rs2395179	29534301	Nishida N	2018-03-13	Hepatology	Key HLA-DRB1-DQB1 haplotypes and role of the BTNL2 gene for response to a hepatitis B vaccine.	Response to hepatitis B vaccine	107 Japanese ancestry low responder individuals, 351 Japanese ancestry intermediate responder individuals, 735 Japanese ancestry high responder individuals	NA	6p21.32	HLA-DRA	rs2395179-?		5E-14		0.221	unit decrease	Affymetrix [427664]	N
613	chr6_mann_hap4	3750103	3750104	rs9268644	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DRA	rs9268644-A	NR	4E-13		0.022277	[0.016-0.028] unit increase	Affymetrix [323123] (imputed)	N
613	chr6_mann_hap4	3750103	3750104	rs9268644	28425483	Qiu F	2017-04-20	Nat Commun	A genome-wide association study identifies six novel risk loci for primary biliary cholangitis.	Primary biliary cholangitis	1,122 Han Chinese ancestry cases, 4,036 Han Chinese ancestry controls	907 Han Chinese ancestry cases, 2,127 Han Chinese ancestry controls	6p21.32	HLA-DRA	rs9268644-?	0.823	8E-31		1.9607843	[1.75-2.22]	Illumina [776516]	N
613	chr6_mann_hap4	3750555	3750556	rs3135394	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p21.32	HLA-DRA	rs3135394-G	0.344	3E-33				Illumina [118177]	N
613	chr6_mann_hap4	3750555	3750556	rs3135394	24097067	Lessard CJ	2013-11-01	Nat Genet	Variants at multiple loci implicated in both innate and adaptive immune responses are associated with Sjogren's syndrome.	Sjogren's syndrome	395 European ancestry cases, 1,975 European ancestry controls	1,243 European ancestry cases, 4,779 European ancestry controls	6p21.32	HLA-DRA	rs3135394-G	0.11	5E-113		3.52	[3.02-4.10]	Illumina [648937]	N
613	chr6_mann_hap4	3750555	3750556	rs3135394	19838195	Gateva V	2009-11-01	Nat Genet	A large-scale replication study identifies TNIP1, PRDM1, JAZF1, UHRF1BP1 and IL10 as risk loci for systemic lupus erythematosus.	Systemic lupus erythematosus	1,310 European ancestry cases, 7,859 European ancestry controls	1,963 European ancestry cases, 4,329 European ancestry controls	6p21.32	HLA-DRB1	rs3135394-G	0.1	2E-60		1.98	[1.84-2.14]	Illumina [~ 2100000] (imputed)	N
613	chr6_mann_hap4	3750585	3750586	rs9268645	19430480	Barrett JC	2009-05-10	Nat Genet	Genome-wide association study and meta-analysis find that over 40 loci affect risk of type 1 diabetes.	Type 1 diabetes	7,514 European ancestry cases, 9,045 European ancestry controls	4,267 European ancestry cases, 4,670 European ancestry controls, 4,342 European ancestry trios from 2,319 families	6p21.32	MHC	rs9268645-?	NR	1E-100				Affymetrix, Illumina [841622] (imputed)	N
613	chr6_mann_hap4	3750965	3750966	rs3129879	34212547	An J	2021-07-01	Allergy Asthma Immunol Res	Genome-Wide Association Study of Korean Asthmatics: A Comparison With UK Asthmatics.	Adult asthma	1,386 Korean ancestry cases, 5,205 Korean ancestry controls	NA	6p21.32		rs3129879-A	0.34	3E-6		0.78	[0.71-0.87]	Affymetrix [4922160] (imputed)	N
613	chr6_mann_hap4	3751114	3751115	rs9268652	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Hepatitis B	1,425 European ancestry cases, 218,180 European ancestry controls	NA	6p21.32	HLA-DRA	rs9268652-G	0.74	3E-9		1.32	[1.25-1.38]	Illumina [at least 560000] (imputed)	N
613	chr6_mann_hap4	3751588	3751589	rs3129882	24511991	Hill-Burns EM	2014-02-10	BMC Genomics	Identification of a novel Parkinson's disease locus via stratified genome-wide association study.	Parkinson's disease	1,565 European ancestry sproadic Parkinson's disease cases, 435 European ancestry familial Parkinson's disease cases, 1,986 European ancestry controls	1,528 European ancestry sporadic Parkinson's disease cases, 707 European ancestry familial Parkinson's disease cases, 796 European ancestry controls	6p21.32	HLA	rs3129882-G	0.395	5E-10	(Sporadic)	1.38	[1.24-1.52]	Illumina [811597]	N
613	chr6_mann_hap4	3751588	3751589	rs3129882	24511991	Hill-Burns EM	2014-02-10	BMC Genomics	Identification of a novel Parkinson's disease locus via stratified genome-wide association study.	Parkinson's disease	1,565 European ancestry sproadic Parkinson's disease cases, 435 European ancestry familial Parkinson's disease cases, 1,986 European ancestry controls	1,528 European ancestry sporadic Parkinson's disease cases, 707 European ancestry familial Parkinson's disease cases, 796 European ancestry controls	6p21.32	HLA	rs3129882-G	0.395	3E-8		1.31	[1.19-1.43]	Illumina [811597]	N
613	chr6_mann_hap4	3751588	3751589	rs3129882	21779181	Gorlova O	2011-07-14	PLoS Genet	Identification of novel genetic markers associated with clinical phenotypes of systemic sclerosis through a genome-wide association strategy.	Systemic sclerosis	2,296 European ancestry cases, 5,172 European ancestry controls	3,175 European ancestry cases, 4,210 European ancestry controls	6p21.32	HLA-DRA	rs3129882-?	0.44	2E-27	(ATA positive)	2.17	[1.88-2.50]	Illumina [NR] (imputed)	N
613	chr6_mann_hap4	3751588	3751589	rs3129882	20711177	Hamza TH	2010-08-15	Nat Genet	Common genetic variation in the HLA region is associated with late-onset sporadic Parkinson's disease.	Parkinson's disease	2,000 European ancestry cases, 1,986 European ancestry controls	Up to 1,447 cases, 1,468 controls	6p21.32	HLA-DRA	rs3129882-G	0.40	2E-10		1.26	[1.17-1.35]	Illumina [811597]	N
613	chr6_mann_hap4	3751766	3751767	rs17496549	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs17496549-T	0.2	9E-9		4.33	[3.31-5.67]	Illumina [NR] (imputed)	N
613	chr6_mann_hap4	3752634	3752635	rs3129886	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Matrix metalloproteinase-10 levels	21,758 European ancestry individuals	9,173 individuals	6p21.32		rs3129886-T	0.25	6E-7		0.0572	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
613	chr6_mann_hap4	3752749	3752750	rs3129887	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DRA	rs3129887-A	NR	4E-11		0.0236955	[0.017-0.031] unit decrease	Affymetrix [319769] (imputed)	N
613	chr6_mann_hap4	3752749	3752750	rs3129887	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DRA	rs3129887-A	NR	2E-10		0.0226864	[0.016-0.03] unit decrease	Affymetrix [319769] (imputed)	N
613	chr6_mann_hap4	3752749	3752750	rs3129887	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DRA	rs3129887-A	NR	2E-12		0.0256	[0.019-0.033] unit decrease	Affymetrix [321169] (imputed)	N
613	chr6_mann_hap4	3752749	3752750	rs3129887	28062665	Kawashima M	2017-01-05	Hum Mol Genet	Genome-wide association studies identify PRKCB as a novel genetic susceptibility locus for primary biliary cholangitis in the Japanese population.	Primary biliary cholangitis	1,381 Japanese ancestry cases, 1,505 Japanese ancestry controls	512 Japanese ancestry cases, 6,512 Japanese ancestry controls	6p21.32	HLA-DRA, HLA-DRB1	rs3129887-?	NR	2E-29		3.13	[2.54-3.85]	Affymetrix [425290]	N
613	chr6_mann_hap4	3752999	3753000	rs9268659	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	HLA-DRA	rs9268659-T	NR	2E-9		0.0171616	[0.012-0.023] unit decrease	Affymetrix [321114] (imputed)	N
613	chr6_mann_hap4	3752999	3753000	rs9268659	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Perceived unattractiveness to mosquitoes	16,576 European ancestry individuals	NA	6p21.32	HLA-DRA	rs9268659-T	0.42	2E-9		0.139734	[0.094-0.186] unit increase	Illumina [7433384] (imputed)	N
613	chr6_mann_hap4	3753093	3753094	rs8084	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DRA	rs8084-A	NR	3E-21		0.027016	[0.021-0.033] unit decrease	Affymetrix [321169] (imputed)	N
613	chr6_mann_hap4	3753434	3753435	rs2239805	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.32	HLA-DRA, HLA-DRB9	rs2239805-G	0.169007	1E-12	(EA, Complement C4)	0.4079	[0.3-0.52] unit decrease	Affymetrix [509946]	N
613	chr6_mann_hap4	3753704	3753705	rs7192	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs7192-T	0.49	3E-9		0.15	[0.11-0.22]	Illumina [NR] (imputed)	N
613	chr6_mann_hap4	3753704	3753705	rs7192	22541561	Zhao H	2012-04-26	Am J Hum Genet	A genome-wide association study reveals that variants within the HLA region are associated with risk for nonobstructive azoospermia.	Non-obstructive azoospermia	802 Han Chinese ancestry cases, 1,863 Han Chinese ancestry controls	1,424 Han Chinese ancestry cases, 2,713 Han Chinese ancestry controls	6p21.32	HLA-DRA	rs7192-T	0.26	3E-6		1.29	[NR]	Affymetrix, Illumina [912924]	N
613	chr6_mann_hap4	3753904	3753905	rs2239802	28008999	Ostrowski J	2016-12-23	Sci Rep	Genetic architecture differences between pediatric and adult-onset inflammatory bowel diseases in the Polish population.	Ulcerative colitis	269 Polish ancestry child cases, 259 Polish ancestry adult cases, 582 Polish ancestry controls	121 Polish ancestry child cases, 85 Polish ancestry adult cases, 352 Polish ancestry controls	6p21.32	HLA-DRA	rs2239802-?		2E-7	(Adults)	1.7715251	[1.43-2.19]	Illumina [2612357]	N
613	chr6_mann_hap4	3754454	3754455	rs4935356	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	6p21.32	HLA-DRA	rs4935356-T	0.756088	8E-22		0.0245501	[0.02-0.03] unit decrease	Affymetrix [NR] (imputed)	N
613	chr6_mann_hap4	3754461	3754462	rs3135390	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DRA	rs3135390-C	NR	6E-9		0.0224213	[0.015-0.03] unit increase	Affymetrix [323123] (imputed)	N
613	chr6_mann_hap4	3754501	3754502	rs3177928	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs3177928-A	0.21	2E-8		4.13	[3.16-5.38]	Illumina [NR] (imputed)	N
613	chr6_mann_hap4	3754501	3754502	rs3177928	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.32	NR	rs3177928-G	NR	1E-9		0.033	unit decrease	Affymetrix [at least 7091467] (imputed)	N
613	chr6_mann_hap4	3754501	3754502	rs3177928	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.32	NR	rs3177928-G	0.856	5E-7	(EA)	0.03	unit decrease	Affymetrix [at least 7091467] (imputed)	N
613	chr6_mann_hap4	3754501	3754502	rs3177928	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.32	NR	rs3177928-G	NR	1E-15		0.049	unit decrease	Affymetrix [at least 7091467] (imputed)	N
613	chr6_mann_hap4	3754501	3754502	rs3177928	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.32	NR	rs3177928-G	0.856	5E-12	(EA)	0.045	unit decrease	Affymetrix [at least 7091467] (imputed)	N
613	chr6_mann_hap4	3754501	3754502	rs3177928	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.32	NR	rs3177928-G	NR	9E-10		0.038	unit decrease	Affymetrix [at least 7091467] (imputed)	N
613	chr6_mann_hap4	3754501	3754502	rs3177928	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.32	NR	rs3177928-G	0.856	2E-7	(EA)	0.035	unit decrease	Affymetrix [at least 7091467] (imputed)	N
613	chr6_mann_hap4	3754501	3754502	rs3177928	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Total cholesterol levels	32,576 East Asian ancestry individuals, 187,365 European ancestry individuals	10,855 Chinese ancestry individuals	6p21.32	HLA	rs3177928-A	0.181	5E-22	(Trans-ethnic initial)	0.0482	[0.038-0.058] unit increase (EA Beta values)	Affymetrix, Illumina [up to 1900000] (imputed)	N
613	chr6_mann_hap4	3754501	3754502	rs3177928	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	LDL cholesterol levels	32,285 East Asian ancestry individuals, 173,082 European ancestry individuals	8,478 Chinese ancestry individuals	6p21.32	HLA	rs3177928-A	0.181	5E-17	(Trans-ethnic initial)	0.0452	[0.035-0.055] unit increase (EA Beta value)	Affymetrix, Illumina [~ 1900000] (imputed)	N
613	chr6_mann_hap4	3754501	3754502	rs3177928	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	6p21.32	HLA	rs3177928-A	0.17	3E-17		0.045	[NR] unit increase	NR [NR] (imputed)	N
613	chr6_mann_hap4	3754501	3754502	rs3177928	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	6p21.32	HLA	rs3177928-A	0.17	1E-21		0.048	[NR] unit increase	NR [NR] (imputed)	N
613	chr6_mann_hap4	3754501	3754502	rs3177928	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	LDL cholesterol	95,454 European ancestry individuals	NA	6p21.32	HLA	rs3177928-A	0.16	2E-15		1.83	[1.36-2.3] mg/dL increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
613	chr6_mann_hap4	3754501	3754502	rs3177928	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	Cholesterol, total	100,184 European ancestry individuals	NA	6p21.32	HLA	rs3177928-A	0.16	4E-19		2.31	[1.78-2.84] mg/dL increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
613	chr6_mann_hap4	3754546	3754547	rs7194	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.32	HLA-DRA	rs7194-A	0.5927	6E-9		0.0221	[0.015-0.03] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
613	chr6_mann_hap4	3754546	3754547	rs7194	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6p21.32	BTNL2	rs7194-A	0.5927	5E-8		0.0247	[0.016-0.034] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
613	chr6_mann_hap4	3754546	3754547	rs7194	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.32	HLA-DRA	rs7194-?	0.5927	1E-7				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
613	chr6_mann_hap4	3754605	3754606	rs7195	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs7195-A	0.49	3E-9		0.15	[0.11-0.22]	Illumina [NR] (imputed)	N
613	chr6_mann_hap4	3754658	3754659	rs1051336	29857070	Gao J	2018-05-29	J Invest Dermatol	Association study and fine-mapping major histocompatibility complex analysis of pemphigus vulgaris in a Han Chinese population.	Pemphigus vulgaris	240 Han Chinese ancestry cases, 1,031 Han Chinese ancestry controls	252 Han Chinese ancestry cases, 1,852 Han Chinese ancestry controls	6p21.32	NR	rs1051336-?	NR	3E-6	(conditioned on HLA-DRB1*14:04 and rs7454108)	3.03	[NR]	Illumina [802980]	N
613	chr6_mann_hap4	3755117	3755118	rs3135388	19525953	De Jager PL	2009-06-14	Nat Genet	Meta-analysis of genome scans and replication identify CD6, IRF8 and TNFRSF1A as new multiple sclerosis susceptibility loci.	Multiple sclerosis	2,624 European ancestry cases, 7,220 European ancestry controls	2,215 European ancestry cases, 2,116 European ancestry controls		HLA-DRB1	rs3135388-A	0.22	4E-225		2.75	[2.46-3.07]	Affymetrix, Illumina [~ 2560000] (imputed)	N
613	chr6_mann_hap4	3755117	3755118	rs3135388	17660530	Hafler DA	2007-07-29	N Engl J Med	Risk alleles for multiple sclerosis identified by a genomewide study.	Multiple sclerosis	931 European ancestry trios, 2,431 European ancestry controls	609 European ancestry trios, 2,322 European ancestry cases, 2,987 European ancestry controls		HLA-DRA	rs3135388-A	0.23	9E-81		1.99	[1.84-2.15]	Affymetrix [334923]	N
613	chr6_mann_hap4	3755160	3755161	rs2213586	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs2213586-A	0.49	3E-9		0.15	[0.11-0.22]	Illumina [NR] (imputed)	N
613	chr6_mann_hap4	3755216	3755217	rs2213585	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs2213585-G	0.48	3E-9		0.15	[0.11-0.22]	Illumina [NR] (imputed)	N
613	chr6_mann_hap4	3755525	3755526	rs2227139	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs2227139-G	0.49	3E-9		0.15	[0.11-0.22]	Illumina [NR] (imputed)	N
613	chr6_mann_hap4	3755525	3755526	rs2227139	19820697	Soranzo N	2009-10-11	Nat Genet	A genome-wide meta-analysis identifies 22 loci associated with eight hematological parameters in the HaemGen consortium.	Hematological parameters	4,627 European ancestry individuals	9,316 European ancestry individuals	6p21.32	intergenic	rs2227139-G	NR	1E-7	(WBC)	0.02	[0.01-0.03] 10^9/l increase	Affymetrix, Illumina [~ 2110000] (imputed)	N
613	chr6_mann_hap4	3755611	3755612	rs3129889	22190364	Patsopoulos NA	2011-12-01	Ann Neurol	Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.	Multiple sclerosis	5,545 European ancestry cases, 12,153 European ancestry controls	NA	6p21.32	HLA-DRB1	rs3129889-G	0.20	1E-206		2.97	[NR]	Affymetrix, Illumina [2529394]	N
613	chr6_mann_hap4	3755623	3755624	rs3763326	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (mother's age at death or mother's attained age)	up to 699,000 individuals	NA	6p21.32	NR	rs3763326-A		5E-6				Illumina [458525]	N
613	chr6_mann_hap4	3755896	3755897	rs3763327	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs3763327-G	0.49	3E-9		0.15	[0.11-0.22]	Illumina [NR] (imputed)	N
613	chr6_mann_hap4	3756339	3756340	rs3129890	26272072	Jiang X	2015-08-13	Rheumatology (Oxford)	An Immunochip-based interaction study of contrasting interaction effects with smoking in ACPA-positive versus ACPA-negative rheumatoid arthritis.	ACPA-positive rheumatoid arthritis (smoking interaction)	340 European ancestry never-smoker cases, 493 European ancestry ever-smoker cases, 746 European ancestry never-smoker controls, 994 European ancestry ever-smoker controls	187 European ancestry never-smoker cases, 421 European ancestry ever-smoker cases, 461 European ancestry never-smoker controls, 447 European ancestry ever-smoker controls	6p21.32	NR	rs3129890-?	NR	1E-10	(adjusted for HLA shared epitope)	2.5	[1.89-3.57]	Illumina [133648] (imputed)	N
613	chr6_mann_hap4	3756339	3756340	rs3129890	21804548	Hirota T	2011-07-31	Nat Genet	Genome-wide association study identifies three new susceptibility loci for adult asthma in the Japanese population.	Asthma	1,532 Japanese ancestry cases, 3,304 Japanese ancestry controls	5,639 Japanese ancestry cases, 24,608 Japanese ancestry controls	6p21.32	HLA-DRA	rs3129890-T	0.61	5E-13		1.15	[1.11-1.20]	Illumina [458847]	N
613	chr6_mann_hap4	3756353	3756354	rs9268670	33768542	Liu Y	2021-03-26	Clin Pharmacol Ther	Class II HLA Variants Associate with Risk of Pegaspargase Hypersensitivity.	Asparaginase hypersensitivity in acute lymphoblastic leukemia	310 African ancestry individuals, 798 Native American individuals, 387 individuals	NA	6p21.32	NR	rs9268670-T	NR	7E-7		0.56	[NR]	Illumina [NR] (imputed)	N
613	chr6_mann_hap4	3756353	3756354	rs9268670	33768542	Liu Y	2021-03-26	Clin Pharmacol Ther	Class II HLA Variants Associate with Risk of Pegaspargase Hypersensitivity.	Asparaginase hypersensitivity in acute lymphoblastic leukemia	310 African ancestry individuals, 798 Native American individuals, 112 Asian ancestry individuals, 387 individuals	NA	6p21.32	HLA-DRA	rs9268670-T	NR	2E-7		0.55		Illumina [NR] (imputed)	N
613	chr6_mann_hap4	3756356	3756357	rs9268671	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs9268671-A	0.339438	4E-8		0.023014	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
613	chr6_mann_hap4	3756356	3756357	rs9268671	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DRA	rs9268671-A	NR	4E-19		0.0265032	[0.021-0.032] unit decrease	Affymetrix [319769] (imputed)	N
613	chr6_mann_hap4	3756356	3756357	rs9268671	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DRA	rs9268671-A	NR	1E-12		0.0233694	[0.017-0.03] unit decrease	Affymetrix [323858] (imputed)	N
613	chr6_mann_hap4	3756356	3756357	rs9268671	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DRA	rs9268671-A	NR	5E-18		0.0256545	[0.02-0.031] unit decrease	Affymetrix [319769] (imputed)	N
613	chr6_mann_hap4	3756356	3756357	rs9268671	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	HLA-DRA	rs9268671-A	NR	4E-11		0.0217286	[0.015-0.028] unit decrease	Affymetrix [127266] (imputed)	N
613	chr6_mann_hap4	3756356	3756357	rs9268671	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DRA	rs9268671-A	NR	2E-11		0.0199636	[0.014-0.026] unit increase	Affymetrix [321016] (imputed)	N
613	chr6_mann_hap4	3756356	3756357	rs9268671	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DRA	rs9268671-A	NR	3E-22		0.0312717	[0.025-0.038] unit increase	Affymetrix [323123] (imputed)	N
613	chr6_mann_hap4	3756356	3756357	rs9268671	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	6p21.32	HLA-DRA	rs9268671-G	0.661005	1E-11		0.018096138	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
613	chr6_mann_hap4	3756736	3756737	rs9268677	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DRA	rs9268677-A	NR	4E-15		0.0222453	[0.017-0.028] unit increase	Affymetrix [319769] (imputed)	N
613	chr6_mann_hap4	3756736	3756737	rs9268677	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DRA	rs9268677-A	NR	1E-14		0.0218771	[0.016-0.027] unit increase	Affymetrix [319769] (imputed)	N
613	chr6_mann_hap4	3757151	3757152	rs3129891	26272072	Jiang X	2015-08-13	Rheumatology (Oxford)	An Immunochip-based interaction study of contrasting interaction effects with smoking in ACPA-positive versus ACPA-negative rheumatoid arthritis.	ACPA-positive rheumatoid arthritis (smoking interaction)	340 European ancestry never-smoker cases, 493 European ancestry ever-smoker cases, 746 European ancestry never-smoker controls, 994 European ancestry ever-smoker controls	187 European ancestry never-smoker cases, 421 European ancestry ever-smoker cases, 461 European ancestry never-smoker controls, 447 European ancestry ever-smoker controls	6p21.32	NR	rs3129891-?	NR	2E-9	(adjusted for HLA shared epitope)	2.5	[1.89-3.7]	Illumina [133648] (imputed)	N
613	chr6_mann_hap4	3757224	3757225	rs9469112	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	6p21.32	HLA-DRA	rs9469112-T	0.1734	1E-10		6.4424515	NR z-unit increase	Affymetrix, Illumina [up to 10847151] (imputed)	N
613	chr6_mann_hap4	3757282	3757283	rs28895028	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs28895028-A	0.21	2E-8		4.13	[3.16-5.38]	Illumina [NR] (imputed)	N
613	chr6_mann_hap4	3757929	3757930	rs12529093	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs12529093-G	0.21	2E-8		4.13	[3.16-5.38]	Illumina [NR] (imputed)	N
613	chr6_mann_hap4	3758046	3758047	rs13209234	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs13209234-A	0.21	2E-8		4.13	[3.16-5.38]	Illumina [NR] (imputed)	N
613	chr6_mann_hap4	3758151	3758152	rs13209059	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs13209059-G	0.21	2E-8		4.13	[3.16-5.38]	Illumina [NR] (imputed)	N
613	chr6_mann_hap4	3759326	3759327	rs28895057	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs28895057-G	0.098	1E-15	(Ubiquitin carboxyl-terminal hydrolase 25, USP25.9215.117.3)	0.39	[0.29-0.49] unit increase	Affymetrix [10572788] (imputed)	N
613	chr6_mann_hap4	3759878	3759879	rs6937167	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.32	NR	rs6937167-AT	0.01	3E-9	(women)	1.02959	[0.7-1.36] unit increase	Affymetrix [up to 8900000] (imputed)	N
613	chr6_mann_hap4	3760115	3760116	rs6937545	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DRA	rs6937545-A	NR	3E-16		0.0268745	[0.02-0.033] unit decrease	Affymetrix [323858] (imputed)	N
613	chr6_mann_hap4	3760115	3760116	rs6937545	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	HLA-DRA	rs6937545-A	NR	4E-14		0.0248417	[0.018-0.031] unit decrease	Affymetrix [127266] (imputed)	N
613	chr6_mann_hap4	3761360	3761360	rs202087577	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	6p21.32	Intergenic	rs202087577-?	NR	3E-21		0.0536425	[0.043-0.065] unit increase	Illumina [13520550] (imputed)	N
613	chr6_mann_hap4	3761552	3761553	rs28895103	33649182	Penova M	2021-03-01	Proc Natl Acad Sci U S A	Genome wide association study of HTLV-1-associated myelopathy/tropical spastic paraparesis in the Japanese population.	HTLV-1 associated myelopathy	731 Japanese ancestry cases, 846 Japanese ancestry controls	NA	6p21.32		rs28895103-G	0.95	1E-8		0.44	[0.33-0.58]	Illumina [126394]	N
613	chr6_mann_hap4	3762047	3762048	rs3135384	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	Systemic lupus erythematosus	1,639 East Asian ancestry cases, 2,410 East Asian ancestry controls	NA			rs3135384-G	NR	7E-26		0.5329	[0.43-0.63] unit decrease	Illumina [NR] (imputed)	N
613	chr6_mann_hap4	3762267	3762268	rs7754768	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs7754768-C	0.49	7E-10		0.14	[0.10-0.20]	Illumina [NR] (imputed)	N
613	chr6_mann_hap4	3762287	3762288	rs9268775	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	6p21.32	HLA-DRA	rs9268775-T	0.0541	3E-6		0.0884	[0.052-0.125] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
613	chr6_mann_hap4	3762585	3762586	rs9268781	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DRB9	rs9268781-T	NR	5E-17		0.0247953	[0.019-0.031] unit increase	Affymetrix [321016] (imputed)	N
613	chr6_mann_hap4	3762944	3762945	rs9268786	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	6p21.32		rs9268786-C	NR	3E-28		0.0241	[0.02-0.028] unit increase	Affymetrix, Illumina [20529698] (imputed)	N
613	chr6_mann_hap4	3763032	3763033	rs111255178	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.32	HLA-DRB9	rs111255178-T	0.1435	3E-6		0.0558	[0.032-0.079] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
613	chr6_mann_hap4	3763162	3763163	rs9268791	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD25 on CD28+ CD4+ T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9268791-C	0.74777	1E-10		0.2077	[0.14-0.27] unit decrease	Illumina [17954496] (imputed)	N
613	chr6_mann_hap4	3763558	3763559	rs3129897	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	HLA-DRB9	rs3129897-A	0.156	2E-29	(Interleukin-21, IL21.7124.18.3)	0.37	[0.31-0.43] unit decrease	Affymetrix [10572788] (imputed)	N
613	chr6_mann_hap4	3763593	3763594	rs28895136	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs28895136-C	0.21	2E-8		4.13	[3.16-5.38]	Illumina [NR] (imputed)	N
613	chr6_mann_hap4	3764280	3764281	rs2097442	34642315	Ferreiro-Iglesias A	2021-10-12	Nat Commun	Germline determinants of humoral immune response to HPV-16 protect against oropharyngeal cancer.	Oropharynx cancer and human papilloma virus 16 negative oropharyngeal cancer	2,359 European ancestry cases, 565 European ancestry controls	NA	6p21.32		rs2097442-A	NR	1E-6		1.2355		Illumina [up to 7574753] (imputed)	N
613	chr6_mann_hap4	3764280	3764281	rs2097442	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Non-Hodgkin's lymphoma	2,400 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs2097442-A	NR	3E-19		1.3187393	NR	Affymetrix [7846216] (imputed)	N
613	chr6_mann_hap4	3765607	3765608	rs140302846	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	6p21.32	NR	rs140302846-?	NR	1E-15				Affymetrix [~ 8270000] (imputed)	N
613	chr6_mann_hap4	3765607	3765608	rs140302846	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs140302846-?	NR	7E-13				Affymetrix [~ 8270000] (imputed)	N
613	chr6_mann_hap4	3766006	3766007	rs9268807	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	HLA	rs9268807-C	0.208	5E-117		1.604	[1.56-1.65]	Illumina [11270530] (imputed)	N
613	chr6_mann_hap4	3766122	3766123	rs13220657	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs13220657-T	0.21	2E-8		4.13	[3.16-5.38]	Illumina [NR] (imputed)	N
613	chr6_mann_hap4	3766461	3766462	rs9268811	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DRB9	rs9268811-T	NR	1E-14		0.0222291	[0.017-0.028] unit increase	Affymetrix [321169] (imputed)	N
613	chr6_mann_hap4	3766685	3766686	rs9268813	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	6p21.32	NR	rs9268813-?	NR	8E-14				Affymetrix [~ 8270000] (imputed)	N
613	chr6_mann_hap4	3766685	3766686	rs9268813	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.32	NR	rs9268813-?	NR	8E-15				Affymetrix [~ 8270000] (imputed)	N
613	chr6_mann_hap4	3766685	3766686	rs9268813	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs9268813-?	NR	1E-17				Affymetrix [~ 8270000] (imputed)	N
613	chr6_mann_hap4	3766973	3766974	rs7763262	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	6p21.32	HLA-DQB1, HLA-DQA1, HLA-DRB1	rs7763262-C	0.72	1E-10	(East Asian)	1.3	[NR]	Illumina [> 1000000] (imputed)	N
613	chr6_mann_hap4	3766973	3766974	rs7763262	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	6p21.32	HLA-DQB1, HLA-DQA1, HLA-DRB1	rs7763262-C	0.69	2E-38		1.41	[NR]	Illumina [> 1000000] (imputed)	N
613	chr6_mann_hap4	3766973	3766974	rs7763262	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	6p21.32	HLA-DQB1, HLA-DQA1, HLA-DRB1	rs7763262-C	0.69	1E-30	(EA)	1.49	[NR]	Illumina [> 1000000] (imputed)	N
613	chr6_mann_hap4	3767396	3767397	rs28895205	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs28895205-G	0.21	2E-8		4.13	[3.16-5.38]	Illumina [NR] (imputed)	N
613	chr6_mann_hap4	3767579	3767580	rs7744304	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DRB9	rs7744304-G	NR	9E-27		0.0345924	[0.028-0.041] unit increase	Affymetrix [323123] (imputed)	N
613	chr6_mann_hap4	3767854	3767855	rs41291794	27927641	Ombrello MJ	2016-12-07	Ann Rheum Dis	Genetic architecture distinguishes systemic juvenile idiopathic arthritis from other forms of juvenile idiopathic arthritis: clinical and therapeutic implications.	Systemic juvenile idiopathic arthritis	178 European ancestry cases, 434 European ancestry controls, 81 Hispanic/Latin American cases, 177 Hispanic/Latin American controls, 511 cases, 6,336 controls	NA	6p21.32	HLA-DRA	rs41291794-?		4E-15	(Additive)	2.1	[1.80-2.60]	Illumina [5600610] (imputed)	N
613	chr6_mann_hap4	3768075	3768076	rs6457592	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DRB9	rs6457592-C	NR	2E-10		0.0179035	[0.012-0.023] unit decrease	Affymetrix [321016] (imputed)	N
613	chr6_mann_hap4	3769097	3769098	rs113164910	27668658	Iotchkova V	2016-11-01	Nat Genet	Discovery and refinement of genetic loci associated with cardiometabolic risk using dense imputation maps.	Cardiometabolic and hematological traits	up to 35,981 European ancestry individuals	up to 102,505 European ancestry individuals	6p21.32	HLA-DRA	rs113164910-AAC		4E-54	(WBC)	0.008	[0.008-0.008] unit increase	Affymetrix, Illumina [17000000] (imputed)	N
613	chr6_mann_hap4	3769193	3769194	rs1547422	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD45 on CD4+ T cell	3,113 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs1547422-G	0.77074	1E-9		0.204	[0.14-0.27] unit decrease	Illumina [18030777] (imputed)	N
613	chr6_mann_hap4	3769273	3769274	rs1548306	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycoprotein acetyls levels	115,082 European ancestry individuals	NA	6p21.32		rs1548306-A	0.337505	3E-30		0.0494261	[0.041-0.058] unit decrease	NR [11722792] (imputed)	N
613	chr6_mann_hap4	3769273	3769274	rs1548306	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA	6p21.32	NR	rs1548306-?	NR	9E-7		0.0374	[0.023-0.052] unit increase	Illumina [at least 560000] (imputed)	N
613	chr6_mann_hap4	3769273	3769274	rs1548306	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	6p21.32	Intergenic	rs1548306-T	NR	6E-10		0.0234279	[0.016-0.031] unit decrease	Illumina [13519193] (imputed)	N
613	chr6_mann_hap4	3769273	3769274	rs1548306	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.32	Intergenic	rs1548306-T	NR	1E-11	(women)	0.0332253	[0.024-0.043] unit decrease	Illumina [13520550] (imputed)	N
613	chr6_mann_hap4	3769273	3769274	rs1548306	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.32	HLA-DRA, HLA-DRB5	rs1548306-T	0.634	9E-14		0.0256004	[0.019-0.032] unit decrease	Illumina [13520550] (imputed)	N
613	chr6_mann_hap4	3769273	3769274	rs1548306	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	6p21.32	HLA-DRA, HLA-DRB5	rs1548306-T	0.634	5E-29		0.0446701	[0.037-0.052] unit decrease	Illumina [13520550] (imputed)	N
613	chr6_mann_hap4	3769475	3769476	rs28732229	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs28732229-T	0.21	2E-8		4.13	[3.16-5.38]	Illumina [NR] (imputed)	N
613	chr6_mann_hap4	3769842	3769843	rs9268831	33558538	Gebresilase T	2021-02-08	Sci Rep	Replication of HLA class II locus association with susceptibility to podoconiosis in three Ethiopian ethnic groups.	Podoconiosis	1,137 Ethiopian ancestry cases, 1,152 Ethiopian ancestry controls	NA	6p21.32	HLA-DRB9	rs9268831-T	0.46	2E-9				Illumina [2201695]	N
613	chr6_mann_hap4	3769842	3769843	rs9268831	29534301	Nishida N	2018-03-13	Hepatology	Key HLA-DRB1-DQB1 haplotypes and role of the BTNL2 gene for response to a hepatitis B vaccine.	Response to hepatitis B vaccine	107 Japanese ancestry low responder individuals, 351 Japanese ancestry intermediate responder individuals, 735 Japanese ancestry high responder individuals	NA	6p21.32	HLA-DRAB5	rs9268831-?		1E-13		0.192	unit decrease	Affymetrix [427664]	N
613	chr6_mann_hap4	3769883	3769884	rs9268832	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs9268832-T	0.49	7E-10		0.14	[0.10-0.20]	Illumina [NR] (imputed)	N
613	chr6_mann_hap4	3770209	3770210	rs9268835	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DRB9	rs9268835-A	NR	4E-20		0.0276383	[0.022-0.034] unit increase	Affymetrix [319769] (imputed)	N
613	chr6_mann_hap4	3770209	3770210	rs9268835	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DRB9	rs9268835-A	NR	4E-20		0.0276817	[0.022-0.034] unit increase	Affymetrix [319769] (imputed)	N
613	chr6_mann_hap4	3770209	3770210	rs9268835	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	HLA-DRB9	rs9268835-A	NR	7E-13		0.0218474	[0.016-0.028] unit increase	Affymetrix [321114] (imputed)	N
613	chr6_mann_hap4	3770379	3770380	rs6903608	24920014	Cozen W	2014-06-12	Nat Commun	A meta-analysis of Hodgkin lymphoma reveals 19p13.3 TCF3 as a novel susceptibility locus.	Hodgkin's lymphoma	1,816 European ancestry cases, 7,877 European ancestry controls	1,281 European ancestry cases, 3,218 European ancestry controls	6p21.32	HLA class II, HLA class I	rs6903608-C	0.30	7E-31		1.64	[1.51-1.78]	Affymetrix, Illumina [1004829] (imputed)	N
613	chr6_mann_hap4	3770379	3770380	rs6903608	24149102	Frampton M	2013-10-22	Nat Commun	Variation at 3p24.1 and 6q23.3 influences the risk of Hodgkin's lymphoma.	Hodgkin's lymphoma	1,465 European ancestry cases, 6,417 European ancestry controls	1,071 European ancestry cases, 953 cases, 1,853 controls	6p21.32	NR	rs6903608-G	0.27	5E-27		1.62	[NR]	Illumina [296129]	N
613	chr6_mann_hap4	3770379	3770380	rs6903608	21037568	Enciso-Mora V	2010-10-31	Nat Genet	A genome-wide association study of Hodgkin's lymphoma identifies new susceptibility loci at 2p16.1 (REL), 8q24.21 and 10p14 (GATA3).	Hodgkin's lymphoma	589 European ancestry cases, 5,199 European ancestry controls	2,057 European ancestry cases, 3,416 European ancestry controls	6p21.32	HLA-DRA	rs6903608-G	0.27	3E-50		1.7	[1.58-1.82]	Illumina [504374]	N
613	chr6_mann_hap4	3770866	3770867	rs9268839	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	6p21.32	HLA-DRB1	rs9268839-A	NR	1E-100		0.737171	[0.52-0.95] unit decrease	Illumina [8380626] (imputed)	N
613	chr6_mann_hap4	3770866	3770867	rs9268839	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	6p21.32	HLA-DRB1	rs9268839-A	0.750718391	3E-7	(AA)	0.623752	[0.39-0.86] unit decrease	Illumina [8380626] (imputed)	N
613	chr6_mann_hap4	3770866	3770867	rs9268839	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	6p21.32	HLA-DRB1	rs9268839-A	0.56	4E-134	(East Asian)	0.64731	[0.6-0.7] unit decrease	Illumina [8380626] (imputed)	N
613	chr6_mann_hap4	3770866	3770867	rs9268839	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	6p21.32	HLA-DRB1	rs9268839-A	0.55	1E-250	(EA)	0.90412	[0.87-0.94] unit decrease	Illumina [8380626] (imputed)	N
613	chr6_mann_hap4	3770866	3770867	rs9268839	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	6p21.32	HLA-DRB1	rs9268839-G	0.45	1E-250	(EA)	2.47	[2.39-2.55]	Affymetrix, Illumina [up to 9739303] (imputed)	N
613	chr6_mann_hap4	3770866	3770867	rs9268839	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	6p21.32	HLA-DRB1	rs9268839-G	0.45	1E-250		2.28	[2.22-2.34]	Affymetrix, Illumina [up to 9739303] (imputed)	N
613	chr6_mann_hap4	3770866	3770867	rs9268839	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	6p21.32	HLA-DRB1	rs9268839-G	0.44	2E-145	(East Asian)	1.9	[1.81-1.99]	Affymetrix, Illumina [up to 9739303] (imputed)	N
613	chr6_mann_hap4	3771298	3771299	rs9268845	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	HLA-DRB9	rs9268845-T	NR	1E-11		0.0248689	[0.018-0.032] unit decrease	Affymetrix [127266] (imputed)	N
613	chr6_mann_hap4	3771339	3771340	rs9268846	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DRB9	rs9268846-G	NR	5E-10		0.0201434	[0.014-0.026] unit increase	Affymetrix [323858] (imputed)	N
613	chr6_mann_hap4	3771339	3771340	rs9268846	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	HLA-DRB9	rs9268846-G	NR	2E-9		0.019558	[0.013-0.026] unit increase	Affymetrix [127266] (imputed)	N
613	chr6_mann_hap4	3771397	3771398	rs9268848	32890573	Yan Q	2020-09-02	J Allergy Clin Immunol	A genome-wide association study of asthma hospitalizations in adults.	Exacerbations requiring hospitalisation in asthma	1,658 British ancestry cases, 32,509 British ancestry controls	NA	6p21.32	NR	rs9268848-G	0.42	2E-6		0.84	[NR]	Affymetrix [87696888] (imputed)	N
613	chr6_mann_hap4	3771397	3771398	rs9268848	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	6p21.32	HLA-DRB9	rs9268848-A	0.551419	2E-25		0.025138251	[0.02-0.03] unit increase	Affymetrix [93095623] (imputed)	N
613	chr6_mann_hap4	3771397	3771398	rs9268848	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	6p21.32	NR	rs9268848-?	NR	3E-20				Affymetrix [~ 8270000] (imputed)	N
613	chr6_mann_hap4	3771397	3771398	rs9268848	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	6p21.32	HLA-DRA	rs9268848-A	0.6148	6E-9	(East Asian)	0.0347	[0.023-0.046] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
613	chr6_mann_hap4	3771676	3771677	rs9268851	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein H6PD	5,364 Icelandic ancestry individuals	NA	6p21.32		rs9268851-A	0.2209	1E-96		0.45447	[0.41-0.5] unit increase	Illumina [7506463] (imputed)	N
613	chr6_mann_hap4	3771737	3771738	rs9268853	30552108	Kawabata Y	2018-12-14	Diabetes	A genome-Wide Association Study Confirming a Strong Effect of HLA and Identifying Variants in CSAD/lnc-ITGB7-1 on Chromosome 12q13.13 Associated with Susceptibility to Fulminant Type 1 Diabetes.	Fulminant type 1 diabetes	257 Japanese ancestry cases, 419 Japanese ancestry controls	NA	6p21.32	HLA	rs9268853-?	NR	2E-23		3.18	[2.53-4.01]	Affymetrix [426851] (imputed)	N
613	chr6_mann_hap4	3771737	3771738	rs9268853	23511034	Yang SK	2013-04-01	Inflamm Bowel Dis	Genome-wide association study of ulcerative colitis in Koreans suggests extensive overlapping of genetic susceptibility with Caucasians.	Ulcerative colitis	388 Korean ancestry cases, 739 Korean ancestry controls	417 Korean ancestry cases, 732 Korean ancestry controls	6p21.32	MHC	rs9268853-T	0.64	3E-6		1.37	[1.20-1.56]	Illumina [581060]	N
613	chr6_mann_hap4	3771737	3771738	rs9268853	23349640	Vijai J	2013-01-17	PLoS Genet	Susceptibility loci associated with specific and shared subtypes of lymphoid malignancies.	Lymphoma	275 Follicular non-Hodgkin's Lymphoma cases, 269 diffuse large B-cell non-Hodgkin's Lymphoma cases, 198 other non-Hodgkin's Lymphoma cases, 202 Hodgkin's Lymphoma cases, 4,044 controls	202 European ancestry Follicular non-Hodgkin's Lymphoma cases, 367 European ancestry diffuse large B-cell non-Hodgkin's Lymphoma cases, 577 European ancestry other non-Hodgkin's Lymphoma cases, 99 European ancestry Hodgkin's Lymphoma cases, 2,596 European ancestry controls	6p21.32	BTLN2, HLA-DRA, HLA-DRB5, HLA-DRB1	rs9268853-C	NR	2E-10	(FL)	1.56	[NR]	Affymetrix [530583]	N
613	chr6_mann_hap4	3771737	3771738	rs9268853	21297633	Anderson CA	2011-02-06	Nat Genet	Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47.	Ulcerative colitis	6,687 European ancestry cases, 19,718 European ancestry controls	9,628 European ancestry cases, 12,917 European ancestry controls	6p21.32	HLA-DRA, HLA-DRB5, BTNL2, HLA-DRB1, HLA-DQA1	rs9268853-T	0.66	1E-55		1.4	[1.34-1.47]	Affymetrix, Illumina [~ 1100000] (imputed)	N
613	chr6_mann_hap4	3771813	3771814	rs9268856	24943344	Ferrari R	2014-07-01	Lancet Neurol	Frontotemporal dementia and its subtypes: a genome-wide association study.	Frontotemporal dementia	1,377 European ancestry behavioural variant cases, 308 European ancestry Semantic dementia cases, 269 European ancestry Progressive nonfluent aphasia cases, 200 European ancestry Frontotremporal dementia with motor neuron disease cases, up to 4,308 European ancestry controls	690 European ancestry behavioural variant cases, 190 European ancestry Semantic dementia cases, 221 European ancestry Progressive nonfluent aphasia cases, 94 European ancestry Frontotremporal dementia with motor neuron disease cases, 177 European ancestry Frontotemporal lobar degeneration cases, up to 5,094 European ancestry controls	6p21.32	HLA-DRA, HLA-DRB5, BTNL2	rs9268856-C	0.748	6E-9	(All Frontotemporal dementia)	1.24	[1.16-1.32]	Illumina [6026385] (imputed)	N
613	chr6_mann_hap4	3773238	3773239	rs9268877	29905830	Lee HS	2018-08-01	J Crohns Colitis	An Intergenic Variant rs9268877 Between HLA-DRA and HLA-DRB Contributes to the Clinical Course and Long-term Outcome of Ulcerative Colitis.	Poor prognosis in Crohn's disease	243 Korean ancestry poor prognosis cases, 364 Korean ancestry good prognosis controls	145 Korean ancestry poor prognosis cases, 129 Korean ancestry good prognosis controls	6p21.32	NA	rs9268877-A	0.35	1E-8		1.72	[1.43-2.07]	Illumina [up to 519662]	N
613	chr6_mann_hap4	3773238	3773239	rs9268877	19915572	Barrett JC	2009-11-15	Nat Genet	Genome-wide association study of ulcerative colitis identifies three new susceptibility loci, including the HNF4A region.	Ulcerative colitis	2,361 European ancestry cases, 5,417 European ancestry controls	2,321 European ancestry cases, 4,818 European ancestry controls	6p21.32	MHC	rs9268877-?	NR	4E-23				Affymetrix [NR]	N
613	chr6_mann_hap4	3773238	3773239	rs9268877	18836448	Franke A	2008-10-05	Nat Genet	Sequence variants in IL10, ARPC2 and multiple other loci contribute to ulcerative colitis susceptibility.	Ulcerative colitis	1,167 European ancestry cases, 777 European ancestry controls	1,855 European ancestry cases, 3,091 European ancestry controls	6p21.32	HLA-DRA, BTNL2	rs9268877-T	0.45	6E-18		1.45	[1.33-1.58]	Affymetrix [355262]	N
613	chr6_mann_hap4	3774059	3774060	rs9268896	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs9268896-A	0.232	3E-20	(Complement C4, C4A.C4B.4481.34.2)	0.28	[0.22-0.34] unit decrease	Affymetrix [10572788] (imputed)	N
613	chr6_mann_hap4	3774171	3774172	rs9268905	28041642	Carmona FD	2016-12-29	Am J Hum Genet	A Genome-wide Association Study Identifies Risk Alleles in Plasminogen and P4HA2 Associated with Giant Cell Arteritis.	Giant cell arteritis	2,134 European ancestry cases, 9,125 European ancestry controls	NA	6p21.32	HLA-DRA, HLA-DRB1	rs9268905-?	0.37	2E-54		1.79	[1.67-1.93]	Illumina [1844133] (imputed)	N
613	chr6_mann_hap4	3774171	3774172	rs9268905	21602797	Wright FA	2011-05-22	Nat Genet	Genome-wide association and linkage identify modifier loci of lung disease severity in cystic fibrosis at 11p13 and 20q13.2.	Cystic fibrosis severity	2,317 European ancestry cases, 177 cases	898 European ancestry sibling pair cases, 75 sibling pair cases	6p21.32	HLA-DRA	rs9268905-C	0.32	1E-7				Illumina [~ 2609000] (imputed)	N
613	chr6_mann_hap4	3774594	3774595	rs78218185	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Asthma	13,015 East Asian ancestry cases, 162,933 East Asian ancestry controls	NA	6p21.32		rs78218185-A	0.135952394	4E-43		0.27918372	[0.24-0.32] unit increase	Illumina [13429513] (imputed)	N
613	chr6_mann_hap4	3774929	3774930	rs9268923	26819262	Zhou Y	2016-01-27	Mult Scler	Genetic loci for Epstein-Barr virus nuclear antigen-1 are associated with risk of multiple sclerosis.	Epstein Barr virus nuclear antigen 1 IgG levels	1,243 parents and up to 2,356 children from 992 families, 1,956 Mexican American individuals		6p21.32	HLA-DRB5, HLA-DQA1, HLA-DRA, HLA-DRB1	rs9268923-C	0.552	1E-11	(non-Mexican American parents and children)	0.18	unit increase	Illumina [up to 2428201] (imputed)	N
613	chr6_mann_hap4	3774929	3774930	rs9268923	26819262	Zhou Y	2016-01-27	Mult Scler	Genetic loci for Epstein-Barr virus nuclear antigen-1 are associated with risk of multiple sclerosis.	Epstein Barr virus nuclear antigen 1 IgG levels	1,243 parents and up to 2,356 children from 992 families, 1,956 Mexican American individuals		6p21.32	HLA-DRA, HLA-DRB5, HLA-DQA1, HLA-DRB1	rs9268923-C	0.552	1E-13	(non-Mexican American parents)	0.252	unit increase	Illumina [up to 2428201] (imputed)	N
613	chr6_mann_hap4	3774929	3774930	rs9268923	26819262	Zhou Y	2016-01-27	Mult Scler	Genetic loci for Epstein-Barr virus nuclear antigen-1 are associated with risk of multiple sclerosis.	Epstein Barr virus nuclear antigen 1 IgG levels	1,243 parents and up to 2,356 children from 992 families, 1,956 Mexican American individuals		6p21.32	HLA-DRA, HLA-DRB5, HLA-DQA1, HLA-DRB1	rs9268923-C	0.552	1E-11	(non-Mexican American sero-positive children)	0.225	unit increase	Illumina [up to 2428201] (imputed)	N
613	chr6_mann_hap4	3774929	3774930	rs9268923	20228798	Franke A	2010-03-14	Nat Genet	Genome-wide association study for ulcerative colitis identifies risk loci at 7q22 and 22q13 (IL17REL).	Ulcerative colitis	1,043 European ancestry cases, 1,703 European ancestry controls	2,539 European ancestry cases, 5,428 European ancestry controls	6p21.32	HLA-DRA	rs9268923-C	0.67	4E-15		1.45	[1.33-1.59]	Affymetrix [1897764] (imputed)	N
613	chr6_mann_hap4	3775063	3775064	rs9268925	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	6p21.32	Intergenic	rs9268925-C	NR	1E-23		0.0788801	[0.063-0.094] unit increase	Illumina [13520550] (imputed)	N
613	chr6_mann_hap4	3775152	3775153	rs9469120	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Yeast infection	52,218 European ancestry cases, 10,235 European ancestry controls	NA	6p21.32	NR	rs9469120-?	NR	9E-8		0.0846	[0.054-0.116] unit decrease	Illumina [at least 560000] (imputed)	N
613	chr6_mann_hap4	3775220	3775221	rs113585425	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs113585425-C	0.19	4E-8		4.04	[3.10-5.28]	Illumina [NR] (imputed)	N
613	chr6_mann_hap4	3775262	3775263	rs2395185	25186300	Terao C	2014-09-03	Arthritis Rheumatol	Association between antinuclear antibodies and the HLA class II locus and heterogeneous characteristics of staining patterns: the Nagahama study.	Antinuclear antibody levels	3,185 Japanese ancestry individuals	3,963 Japanese ancestry individuals	6p21.32	HLA-DRA, HLA-DRB5	rs2395185-?	NR	1E-11		0.25	unit increase	Illumina [303506]	N
613	chr6_mann_hap4	3775262	3775263	rs2395185	23143601	Lan Q	2012-11-11	Nat Genet	Genome-wide association analysis identifies new lung cancer susceptibility loci in never-smoking women in Asia.	Lung cancer	5,510 East Asian ancestry cases, 4,544 East Asian ancestry controls	1,099 East Asian ancestry cases, 2,913 East Asian ancestry controls	6p21.32	HLA class II	rs2395185-T	0.35	1E-8		1.17	[1.11-1.23]	Illumina [596032]	N
613	chr6_mann_hap4	3775262	3775263	rs2395185	22286212	Urayama KY	2012-01-27	J Natl Cancer Inst	Genome-wide association study of classical Hodgkin lymphoma and Epstein-Barr virus status-defined subgroups.	Hodgkin's lymphoma	1,200 European ancestry cases, 6,417 European ancestry controls	563 European ancestry cases, 613 European ancestry controls	6p21.32	HLA-DRA	rs2395185-?	NR	4E-31	(Total cHL)	1.82	[1.67-2.00]	Illumina [502514]	N
613	chr6_mann_hap4	3775262	3775263	rs2395185	20228799	McGovern DP	2010-03-14	Nat Genet	Genome-wide association identifies multiple ulcerative colitis susceptibility loci.	Ulcerative colitis	2,693 European ancestry cases, 6,791 European ancestry controls	2,009 European ancestry cases, 1,580 European ancestry controls	6p21.32	C6orf10, BTNL2, HLA	rs2395185-G	NR	9E-23		1.49	[NR]	Illumina [266047]	N
613	chr6_mann_hap4	3775262	3775263	rs2395185	19915573	Asano K	2009-11-15	Nat Genet	A genome-wide association study identifies three new susceptibility loci for ulcerative colitis in the Japanese population.	Ulcerative colitis	376 Japanese ancestry cases, 934 Japanese ancestry controls	376 Japanese ancestry cases, 1,097 Japanese ancestry controls	6p21.32	intergenic	rs2395185-G	0.61	5E-22		1.92	[1.68-2.19]	Illumina [513923]	N
613	chr6_mann_hap4	3775262	3775263	rs2395185	19122664	Silverberg MS	2009-01-04	Nat Genet	Ulcerative colitis-risk loci on chromosomes 1p36 and 12q15 found by genome-wide association study.	Ulcerative colitis	1,022 European ancestry cases, 2,503 European ancestry controls	1,387 European ancestry cases, 1,115 European ancestry controls	6p21.32	HLA-DQB1, HLA-DRA, BTNL2, HLA-DRB5, HLA-DRB1, HLA-DQA1	rs2395185-?	0.67	1E-16		1.52		Illumina [280748]	N
613	chr6_mann_hap4	3775371	3775372	rs2894257	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p21.32	HLA-DRADQA2	rs2894257-C	0.53	8E-36		1.36	[1.33-1.39]	Illumina [at least 560000] (imputed)	N
613	chr6_mann_hap4	3775413	3775414	rs2395190	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic sinusitis	4,617 East Asian ancestry cases, 152,226 East Asian ancestry controls	NA	6p21.32		rs2395190-T	0.301110024	1E-29		0.26669198	[0.22-0.31] unit decrease	Illumina [13426486] (imputed)	N
613	chr6_mann_hap4	3775841	3775842	rs9268948	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DRB9	rs9268948-G	NR	2E-9		0.0189254	[0.013-0.025] unit decrease	Affymetrix [319769] (imputed)	N
613	chr6_mann_hap4	3775841	3775842	rs9268948	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DRB9	rs9268948-G	NR	2E-9		0.0190762	[0.013-0.025] unit decrease	Affymetrix [319769] (imputed)	N
613	chr6_mann_hap4	3775854	3775855	rs35880697	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6p21.32	NR	rs35880697-?	NR	7E-10				Affymetrix [~ 8270000] (imputed)	N
613	chr6_mann_hap4	3777433	3777434	rs4947340	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	6p21.32	HLA-DRB9	rs4947340-T	0.40103	1E-52		0.0369333	[0.032-0.042] unit decrease	Affymetrix [93095623] (imputed)	N
613	chr6_mann_hap4	3777446	3777447	rs4947257	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p21.32	NR	rs4947257-?	NR	1E-12		0.0988	[0.071-0.126] unit decrease	Illumina [at least 560000] (imputed)	N
613	chr6_mann_hap4	3777642	3777643	rs9268989	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs9268989-A	0.378	6E-14		0.856	[0.81-0.9]	Illumina [11270530] (imputed)	N
613	chr6_mann_hap4	3778332	3778333	rs9391782	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	6p21.32		rs9391782-C	0.36641	1E-6		0.033747	[0.02-0.047] unit increase	Affymetrix [15580782] (imputed)	N
613	chr6_mann_hap4	3779614	3779615	rs9269029	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs9269029-A	0.176	2E-8		0.866	[0.82-0.92]	Illumina [11270530] (imputed)	N
613	chr6_mann_hap4	3779684	3779685	rs9405038	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	High density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	6p21.32	HLA-DRA, HLA-DRB5	rs9405038-?		1E-13		0.0366	[0.027-0.046] unit decrease	Illumina [31500000] (imputed)	N
613	chr6_mann_hap4	3780313	3780314	rs9269041	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on Dendritic Cell	2,871 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9269041-A	0.60762	1E-9		0.2062	[0.14-0.27] unit decrease	Illumina [17926566] (imputed)	N
613	chr6_mann_hap4	3782392	3782394	rs145954018	30674883	Jin Y	2019-01-23	Nat Commun	Early-onset autoimmune vitiligo associated with an enhancer variant haplotype that upregulates class II HLA expression.	Vitiligo (early onset)	704 European ancestry cases, 9,031 European ancestry controls	375 European ancestry cases, 1,455 European ancestry controls	6p21.32	NR	rs145954018-?	NR	3E-54		4.62	[4.42-4.82]	NR [up to 494043] (imputed)	N
613	chr6_mann_hap4	3782814	3782815	rs9357149	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.32		rs9357149-C	0.982	4E-24				Affymetrix [10369434] (imputed)	N
613	chr6_mann_hap4	3783040	3783041	rs9269080	30578877	Dahlin A	2018-12-19	J Allergy Clin Immunol	Large-scale, multi-ethnic genome-wide association study identifies novel loci contributing to asthma susceptibility in adults.	Adult asthma	16,274 European ancestry cases, 38,269 European ancestry controls	10,365 European ancestry cases, 16,110 European ancestry controls, cases and controls (see Moffatt et al 2010)	6p21.32	HLA-DRB9	rs9269080-?	NR	1E-8		1.098901	[1.05-1.11]	Affymetrix [7230512] (imputed)	N
613	chr6_mann_hap4	3783171	3783172	rs9269081	29196614	Sud A	2017-12-01	Nat Commun	Genome-wide association study of classical Hodgkin lymphoma identifies key regulators of disease susceptibility.	Nodular sclerosis Hodgkin lymphoma	1,278 European ancestry cases, 14,325 European ancestry controls	1,586 cases, 3,069 controls	6p21.32	HLA-DRA	rs9269081-?	NR	2E-39		1.82	[1.67-2.00]	Illumina [> 10000000] (imputed)	N
613	chr6_mann_hap4	3783770	3783771	rs2071805	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Osteoporosis	8,520 European ancestry cases, 479,981 European ancestry controls, 9,794 East Asian ancestry cases, 168,932 East Asian ancestry controls	NA	6p21.32		rs2071805-T	NR	9E-10		0.144	[0.098-0.19] unit decrease	Affymetrix, Illumina [25844994] (imputed)	N
613	chr6_mann_hap4	3784193	3784194	rs34452045	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs34452045-G	0.145	3E-31		0.694	[0.63-0.75]	Illumina [11270530] (imputed)	N
613	chr6_mann_hap4	3785296	3785297	rs9269108	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p21.32	NR	rs9269108-?	NR	3E-6		4.641	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
613	chr6_mann_hap4	3785339	3785340	rs9269109	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8+ Natural Killer T Absolute Count	3,652 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9269109-C	0.36376	3E-8		0.1671	[0.11-0.23] unit increase	Illumina [18427348] (imputed)	N
613	chr6_mann_hap4	3785339	3785340	rs9269109	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28- CD25++ CD8+ T cell Absolute Count	3,130 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9269109-C	0.35879	1E-8		0.1597	[0.11-0.21] unit increase	Illumina [18189521] (imputed)	N
613	chr6_mann_hap4	3785872	3785873	rs28895243	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	6p21.32	HLA-DRB9	rs28895243-G	0.039859	5E-20		0.05294043	[0.042-0.064] unit decrease	Affymetrix [93095623] (imputed)	N
613	chr6_mann_hap4	3786141	3786142	rs116353692	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (adrenergics, inhalants)	5,880 East Asian ancestry cases, 172,846 East Asian ancestry controls	NA	6p21.32		rs116353692-C	0.139167381	2E-13		0.21394032	[0.16-0.27] unit increase	Illumina [13429980] (imputed)	N
613	chr6_mann_hap4	3786271	3786272	rs12194148	21156761	Padyukov L	2010-12-14	Ann Rheum Dis	A genome-wide association study suggests contrasting associations in ACPA-positive versus ACPA-negative rheumatoid arthritis.	Rheumatoid arthritis	1,147 European ancestry ACPA positive RA cases, 774 European ancestry ACPA negative RA cases, 1,079 European ancestry controls	887 European ancestry ACPA positive RA cases, 1,218 European ancestry controls	6p21.32	HLA	rs12194148-?	NR	5E-58	(ACPA-positive RA vs controls)			Illumina [1723056] (imputed)	N
613	chr6_mann_hap4	3786623	3786624	rs12195582	25279986	Skibola CF	2014-10-02	Am J Hum Genet	Genome-wide association study identifies five susceptibility loci for follicular lymphoma outside the HLA region.	Follicular lymphoma	2,728 European ancestry cases, 7,758 European ancestry controls	1,795 European ancestry cases, 5,586 European ancestry controls	6p21.32	HLA	rs12195582-T	0.465	5E-100		1.78	[1.69-1.88]	Illumina [up to 21554489]	N
613	chr6_mann_hap4	3787224	3787225	rs9269136	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DRB9	rs9269136-G	NR	1E-11		0.0239787	[0.017-0.031] unit decrease	Affymetrix [321169] (imputed)	N
613	chr6_mann_hap4	3787470	3787475	rs200093869	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Iron deficiency anemia	12,317 European ancestry cases, 468,624 European ancestry controls, 4,618 East Asian ancestry cases, 174,057 East Asian ancestry controls	NA	6p21.32		rs200093869-C	NR	1E-12		0.1142	[0.083-0.146] unit increase	Affymetrix, Illumina [25844780] (imputed)	N
613	chr6_mann_hap4	3787575	3787576	rs9269143	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DRB9	rs9269143-T	NR	2E-9		0.0207074	[0.014-0.027] unit decrease	Affymetrix [319769] (imputed)	N
613	chr6_mann_hap4	3787575	3787576	rs9269143	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DRB9	rs9269143-T	NR	1E-8		0.0198652	[0.013-0.027] unit decrease	Affymetrix [319769] (imputed)	N
613	chr6_mann_hap4	3787767	3787768	rs9378212	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	6p21.32	NR	rs9378212-T	0.469078	7E-211		0.059685	[0.056-0.063] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
613	chr6_mann_hap4	3787767	3787768	rs9378212	27286809	Ligthart S	2016-06-10	BMC Genomics	Bivariate genome-wide association study identifies novel pleiotropic loci for lipids and inflammation.	C-reactive protein levels or HDL-cholesterol levels (pleiotropy)	65,000 individuals (C-reactive protein), 99,900 individuals (HDL-cholesterol)	NA	6p21.32	HLA-DRA	rs9378212-T	NR	7E-10				NR [2501543] (imputed)	N
613	chr6_mann_hap4	3787992	3787993	rs28895267	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.32		rs28895267-C	0.518	1E-110				Affymetrix [10369434] (imputed)	N
613	chr6_mann_hap4	3787992	3787993	rs28895267	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DRB9	rs28895267-T	NR	9E-16		0.0253192	[0.019-0.031] unit increase	Affymetrix [323858] (imputed)	N
613	chr6_mann_hap4	3787992	3787993	rs28895267	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	HLA-DRB9	rs28895267-T	NR	4E-15		0.0247032	[0.019-0.031] unit increase	Affymetrix [127266] (imputed)	N
613	chr6_mann_hap4	3788068	3788069	rs17209866	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p21.32	NR	rs17209866-A	0.453955	2E-344				Affymetrix, Illumina [24649327] (imputed)	N
613	chr6_mann_hap4	3788532	3788533	rs17203563	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28- CD127- CD25++ CD8+ T cell Absolute Count	3,130 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs17203563-A	0.26383	5E-8		0.1789	[0.11-0.24] unit increase	Illumina [18189521] (imputed)	N
613	chr6_mann_hap4	3788790	3788791	rs7453498	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Dementia and core Alzheimer's disease neuropathologic changes	up to 3,887 cases, up to 1,027 controls	NA	6p21.32	intergenic	rs7453498-C	0.8656	3E-6	(Complete)	0.8142	[0.47-1.16] unit increase	Affymetrix, Illumina [NR] (imputed)	N
613	chr6_mann_hap4	3789157	3789158	rs2395191	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic obstructive pulmonary disease	13,530 European ancestry cases, 454,945 European ancestry controls, 4,017 East Asian ancestry cases, 162,653 East Asian ancestry controls	NA	6p21.32		rs2395191-C	NR	9E-10		0.077	[0.052-0.102] unit increase	Affymetrix, Illumina [25843162] (imputed)	N
613	chr6_mann_hap4	3789157	3789158	rs2395191	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8 on Natural Killer T	3,103 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs2395191-C	0.36584	2E-9		0.1751	[0.12-0.23] unit increase	Illumina [18027570] (imputed)	N
613	chr6_mann_hap4	3789157	3789158	rs2395191	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs2395191-C	NR	6E-10		1.1764705	[1.12-1.24]	Affymetrix [7846216] (imputed)	N
613	chr6_mann_hap4	3789715	3789716	rs2395192	33204752	Butler-Laporte G	2020-09-24	Open Forum Infect Dis	Genetic Determinants of Antibody-Mediated Immune Responses to Infectious Diseases Agents: A Genome-Wide and HLA Association Study.	Epstein-Barr virus EA-D antibody levels	7,763 White British ancestry individuals	NA	6p21.32	HLA-DRB9	rs2395192-C	0.440	3E-16		0.13	[0.099-0.161] unit decrease	NR [25472218] (imputed)	N
613	chr6_mann_hap4	3789715	3789716	rs2395192	31102405	Labreche K	2019-05-17	Neuro Oncol	A genome-wide association study identifies susceptibility loci for primary central nervous system lymphoma at 6p25.3 and 3p22.1: a LOC network study.	Primary central nervous system lymphoma	475 European ancestry cases, 1,134 European ancestry controls	NA	6p21.32	HLA-DRA	rs2395192-C	0.59	2E-7		1.51	[1.29-1.76]	Illumina [> 10000000] (imputed)	N
613	chr6_mann_hap4	3790220	3790221	rs4410767	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p21.32		rs4410767-T	0.526	5E-70				Affymetrix [10369434] (imputed)	N
613	chr6_mann_hap4	3790489	3790490	rs9378213	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR+ CD8+ T cell Absolute Count	3,579 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9378213-T	0.69391	5E-15		0.2434	[0.18-0.3] unit decrease	Illumina [18377359] (imputed)	N
613	chr6_mann_hap4	3790489	3790490	rs9378213	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR+ CD8+ T cell %T cell	3,595 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9378213-T	0.6942999999999999	4E-11		0.1984	[0.14-0.26] unit decrease	Illumina [18380839] (imputed)	N
613	chr6_mann_hap4	3790489	3790490	rs9378213	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.32	NOTCH4, C6orf10	rs9378213-G	0.41690000000000005	4E-8	(EA)	0.0227	[0.015-0.031] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
613	chr6_mann_hap4	3790489	3790490	rs9378213	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6p21.32	BTNL2	rs9378213-G	0.41690000000000005	6E-7	(EA)	0.0232	[0.014-0.032] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
613	chr6_mann_hap4	3790489	3790490	rs9378213	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.32	NOTCH4, C6orf10	rs9378213-?	0.41690000000000005	1E-7	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
613	chr6_mann_hap4	3790652	3790653	rs9391786	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Automobile speeding propensity	404,291 European ancestry individuals	NA	6p21.32	HLA-DRB5	rs9391786-A	0.5802	2E-9		0.013639976	[0.0092-0.0181] unit increase	Affymetrix [11514463] (imputed)	N
613	chr6_mann_hap4	3790691	3790692	rs7748270	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	6p21.32		rs7748270-?	NR	4E-12		0.00632062	[0.0045-0.0081] unit decrease	NR [NR]	N
613	chr6_mann_hap4	3790691	3790692	rs7748270	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.32		rs7748270-C	0.487	1E-35				Affymetrix [10369434] (imputed)	N
613	chr6_mann_hap4	3790691	3790692	rs7748270	24782177	Jiang L	2014-05-01	Arthritis Rheumatol	Novel risk loci for rheumatoid arthritis in Han Chinese and congruence with risk variants in Europeans.	Rheumatoid arthritis	433 Han Chinese ancestry ACPA positive cases, 519 Han Chinese ancestry ACPA negative cases, 943 Han Chinese ancestry controls	1,032 Han Chinese ancestry ACPA positive cases, 1,100 Han Chinese ancestry ACPA negative cases, 2,553 Han Chinese ancestry controls	6p21.32	MHC	rs7748270-T	0.525	4E-13	(all cases vs. all controls)	1.7361	[NR]	Affymetrix [3441843] (imputed)	N
613	chr6_mann_hap4	3790691	3790692	rs7748270	24782177	Jiang L	2014-05-01	Arthritis Rheumatol	Novel risk loci for rheumatoid arthritis in Han Chinese and congruence with risk variants in Europeans.	Rheumatoid arthritis	433 Han Chinese ancestry ACPA positive cases, 519 Han Chinese ancestry ACPA negative cases, 943 Han Chinese ancestry controls	1,032 Han Chinese ancestry ACPA positive cases, 1,100 Han Chinese ancestry ACPA negative cases, 2,553 Han Chinese ancestry controls	6p21.32	MHC	rs7748270-T	0.525	1E-16	(ACPA+ cases vs. all controls)	2.01	[NR]	Affymetrix [3441843] (imputed)	N
613	chr6_mann_hap4	3790822	3790823	rs116149201	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cervical cancer	6,563 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs116149201-G	NR	3E-9		3.5068	NR	Affymetrix [7846216] (imputed)	N
613	chr6_mann_hap4	3791080	3791081	rs7749223	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	6p21.32		rs7749223-G	0.167732	2E-9		0.02290938	[0.015-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
613	chr6_mann_hap4	3791503	3791504	rs1964995	31375628	Tengvall K	2019-08-02	Proc Natl Acad Sci U S A	Molecular mimicry between Anoctamin 2 and Epstein-Barr virus nuclear antigen 1 associates with multiple sclerosis risk.	Anti-anoctamin 2 antibody levels	11,936 European ancestry individuals	NA	6p21.32	NR	rs1964995-G	NR	2E-10		0.065	[0.041-0.089] unit decrease	Illumina [615763]	N
613	chr6_mann_hap4	3791503	3791504	rs1964995	31102405	Labreche K	2019-05-17	Neuro Oncol	A genome-wide association study identifies susceptibility loci for primary central nervous system lymphoma at 6p25.3 and 3p22.1: a LOC network study.	Primary central nervous system lymphoma	475 European ancestry cases, 1,134 European ancestry controls	NA	6p21.32	NR	rs1964995-?	NR	4E-6		1.44	[1.23-1.68]	Illumina [> 10000000] (imputed)	N
613	chr6_mann_hap4	3791503	3791504	rs1964995	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (non-Lofgren's syndrome)	568 Swedish ancestry cases, 2,025 Swedish ancestry controls	763 European ancestry cases, 4,901 European ancestry controls, 781 African American ancestry cases, 876 African American ancestry controls	6p21.32	HLA-DRA, HLA-DRB5	rs1964995-A	0.72	3E-32		1.67	[1.54-1.82]	Illumina [118177]	N
613	chr6_mann_hap4	3791503	3791504	rs1964995	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (non-Lofgren's syndrome without extrapulmonary manifestations)	451 Swedish ancestry cases, 2,086 Swedish ancestry controls	NA	6p21.32	HLA-DRA, HLA-DRB5, C6orf10, BTNL2	rs1964995-A	0.7	4E-15		1.8165305	[1.57-2.11]	Illumina [118177]	N
613	chr6_mann_hap4	3791615	3791616	rs9269202	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Nephrotic syndrome	1,314 East Asian ancestry cases, 177,412 East Asian ancestry controls	NA	6p21.32		rs9269202-C	0.823377102	5E-10		0.3571471	[0.24-0.47] unit decrease	Illumina [13429980] (imputed)	N
613	chr6_mann_hap4	3791988	3791989	rs9269207	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs9269207-T	0.622	6E-48		0.754	[0.72-0.79]	Illumina [11270530] (imputed)	N
613	chr6_mann_hap4	3792055	3792056	rs367607265	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.32	Intergenic	rs367607265-?		2E-7		1.74	[1.41-2.14]	Illumina [7645193] (imputed)	N
613	chr6_mann_hap4	3792181	3792182	rs5020946	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PIGA	5,367 Icelandic ancestry individuals	NA	6p21.32		rs5020946-T	0.3884	4E-13		0.140613	[0.1-0.18] unit increase	Illumina [7506463] (imputed)	N
613	chr6_mann_hap4	3792181	3792182	rs5020946	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	6p21.32	intergenic	rs5020946-T	0.4659	1E-94		0.07445833	[0.067-0.082] unit increase	Affymetrix [~ 2500000] (imputed)	N
613	chr6_mann_hap4	3792181	3792182	rs5020946	26785701	Wen W	2016-01-20	Sci Rep	Genome-wide association studies in East Asians identify new loci for waist-hip ratio and waist circumference.	Waist-to-hip ratio adjusted for body mass index	up to 39,869 East Asian individuals	up to 20,137 East Asian individuals, up to 209,947 individuals	6p21.32	HLA-DRB5	rs5020946-T	0.411	1E-9	(East Asian)	0.031	[0.021-0.041] unit increase	Affymetrix, Illumina [at least 1850000] (imputed)	N
613	chr6_mann_hap4	3792181	3792182	rs5020946	26785701	Wen W	2016-01-20	Sci Rep	Genome-wide association studies in East Asians identify new loci for waist-hip ratio and waist circumference.	Waist-to-hip ratio adjusted for body mass index	up to 39,869 East Asian individuals	up to 20,137 East Asian individuals, up to 209,947 individuals	6p21.32	HLA-DRB5	rs5020946-T	0.4108017315260166	4E-8	(East Asian women)	0.03568	[0.023-0.048] unit increase	Affymetrix, Illumina [at least 1850000] (imputed)	N
613	chr6_mann_hap4	3792226	3792227	rs5020945	33209044	Ahn Y	2020-11-12	Diabetes Metab Syndr Obes	Identification of Genetic Variants for Female Obesity and Evaluation of the Causal Role of Genetically Defined Obesity in Polycystic Ovarian Syndrome.	Waist-hip ratio	4,658 Korean ancestry females	5,295 Korean ancestry females	6p21.32	NR	rs5020945-C	0.49	3E-7		0.005	[0.003-0.007] unit increase	Affymetrix [NR] (imputed)	N
613	chr6_mann_hap4	3792666	3792667	rs35957722	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p21.32	NR	rs35957722-?	NR	4E-10		0.0687	[0.047-0.09] unit decrease	Illumina [at least 560000] (imputed)	N
613	chr6_mann_hap4	3797098	3797099	rs113103322	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on plasmacytoid Dendritic Cell	2,872 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs113103322-A	0.11666	2E-27		0.5638	[0.46-0.66] unit increase	Illumina [17926607] (imputed)	N
613	chr6_mann_hap4	3797220	3797221	rs28437337	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	6p21.32		rs28437337-T	0.36183	6E-8		0.038474	[0.025-0.052] unit increase	Affymetrix [15580782] (imputed)	N
613	chr6_mann_hap4	3797493	3797494	rs78279385	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	CAG-180 sp000432435 abundance in stool	5,959 Finnish ancestry individuals	NA	6p21.32		rs78279385-A	0.255984	3E-8		0.158067	[0.1-0.21] unit increase	Illumina [7980478] (imputed)	N
613	chr6_mann_hap4	3797493	3797494	rs78279385	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	74,970 East Asian ancestry individuals	NA	6p21.32		rs78279385-A	0.478006	1E-14		0.0379801	[0.028-0.048] unit increase	Illumina [13465896] (imputed)	N
613	chr6_mann_hap4	3797497	3797498	rs9269233	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs9269233-A	0.23	3E-11		1.17	[1.12-1.22]	Illumina [11270530] (imputed)	N
613	chr6_mann_hap4	3797523	3797524	rs9269234	28118524	Saxena R	2017-01-24	Arthritis Rheumatol	A Multinational Arab Genome-Wide Association Study Identifies New Genetic Associations for Rheumatoid Arthritis.	Rheumatoid arthritis (rheumatoid factor and/or anti-cyclic citrullinated peptide seropositive)	357 African admixed and non-African admixed Arab ancestry cases, 352 African admixed and non-African admixed Arab ancestry controls	234 Arab ancestry cases, 225 Arab ancestry controls	6p21.32	HLA-DRB1	rs9269234-G	0.65	6E-16		2.14	[1.78-2.57]	Illumina [7000653] (imputed)	N
613	chr6_mann_hap4	3797523	3797524	rs9269234	28118524	Saxena R	2017-01-24	Arthritis Rheumatol	A Multinational Arab Genome-Wide Association Study Identifies New Genetic Associations for Rheumatoid Arthritis.	Rheumatoid arthritis	97 African admixed Arab ancestry cases, 410 non-African admixed Arab ancestry cases, 4 Arab ancestry cases, 56 African admixed Arab ancestry controls, 290 non-African admixed Arab ancestry controls, 6 Arab ancestry controls	283 Arab ancestry cases, 221 Arab ancestry controls	6p21.32	HLA-DRB1	rs9269234-G	0.65	5E-11		1.75	[1.48-2.06]	Illumina [7000653] (imputed)	N
613	chr6_mann_hap4	3797569	3797570	rs62405562	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on naive-mature B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs62405562-G	0.45562	9E-11		0.1848	[0.13-0.24] unit increase	Illumina [18238311] (imputed)	N
613	chr6_mann_hap4	3797569	3797570	rs62405562	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on IgD+ CD38dim B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs62405562-G	0.45562	2E-15		0.2285	[0.17-0.28] unit increase	Illumina [18238311] (imputed)	N
613	chr6_mann_hap4	3797569	3797570	rs62405562	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on IgD+ CD24- B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs62405562-G	0.45562	1E-11		0.1942	[0.14-0.25] unit increase	Illumina [18238311] (imputed)	N
613	chr6_mann_hap4	3797569	3797570	rs62405562	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on IgD+ B cell	3,658 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs62405562-G	0.45576	2E-11		0.1921	[0.14-0.25] unit increase	Illumina [18238340] (imputed)	N
613	chr6_mann_hap4	3797632	3797633	rs2395201	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	6p21.32	NR	rs2395201-?	NR	6E-17	(CCL19)	0.579204	[0.44-0.71] unit increase	Illumina [11901634] (imputed)	N
613	chr6_mann_hap4	3797679	3797680	rs2395203	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on plasmacytoid Dendritic Cell	2,872 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs2395203-G	0.0565	3E-13		0.4964	[0.36-0.63] unit increase	Illumina [17926607] (imputed)	N
613	chr6_mann_hap4	3797853	3797854	rs1974459	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	6p21.32		rs1974459-G	0.068544	5E-19		0.040665817	[0.032-0.05] unit increase	Affymetrix [93095623] (imputed)	N
613	chr6_mann_hap4	3797913	3797914	rs1557550	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	6p21.32		rs1557550-T	0.0574940000000001	7E-28		0.0534048	[0.044-0.063] unit increase	Affymetrix [93095623] (imputed)	N
613	chr6_mann_hap4	3798118	3798119	rs2395209	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Receptor for advanced glycosylation end products levels	21,758 European ancestry individuals	9,173 individuals	6p21.32		rs2395209-T	0.16	1E-17		0.1071	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
613	chr6_mann_hap4	3798181	3798182	rs28599891	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	6p21.32	intergenic	rs28599891-G	0.7051	5E-14		0.03041702	[0.023-0.038] unit increase	Affymetrix [~ 2500000] (imputed)	N
613	chr6_mann_hap4	3798298	3798299	rs28368843	33119750	Vergara C	2020-10-29	J Infect Dis	A multi-ancestry sex stratified genome-wide association study of spontaneous clearance of hepatitis C virus.	Hepatitis C (spontaneous viral clearance)	239 African ancestry male cases, 1,184 African ancestry male controls, 206 African ancestry female cases, 572 African ancestry female controls, 489 European ancestry male cases, 703 European ancestry male controls, 212 European ancestry female cases, 332 European ancestry female controls, 91 Hispanic male cases, 197 Hispanic male controls, 82 Hispanic female cases, 116 Hispanic female controls	NA	6p21.32	NR	rs28368843-T	0.07	5E-7	(female)	2.38	[NR]	Illumina [5730693] (imputed)	N
613	chr6_mann_hap4	3798313	3798314	rs28453249	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	HLA-DRB9	rs28453249-T	NR	2E-13		0.021088	[0.015-0.027] unit increase	Affymetrix [321114] (imputed)	N
613	chr6_mann_hap4	3798337	3798338	rs28561769	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p21.32	NR	rs28561769-G	0.459185	3E-228				Affymetrix, Illumina [23114412] (imputed)	N
613	chr6_mann_hap4	3798903	3798904	rs6916742	26819262	Zhou Y	2016-01-27	Mult Scler	Genetic loci for Epstein-Barr virus nuclear antigen-1 are associated with risk of multiple sclerosis.	Epstein Barr virus nuclear antigen 1 IgG levels	1,243 parents and up to 2,356 children from 992 families, 1,956 Mexican American individuals		6p21.32	HLA-DRA, HLA-DRB5, HLA-DQA1, HLA-DRB1	rs6916742-C	0.569	6E-6	(non-Mexican American children)	0.16	unit decrease	Illumina [up to 2428201] (imputed)	N
613	chr6_mann_hap4	3798983	3798984	rs138024423	33589587	Sakaue S	2021-02-15	Nat Commun	Genetic determinants of risk in autoimmune pulmonary alveolar proteinosis.	Autoimmune pulmonary alveolar proteinosis	198 Japanese ancestry cases, 395 Japanese ancestry controls	NA	6p21.32		rs138024423-G	0.072	2E-12		5.2	[3.3-8.2]	Illumina [12153232] (imputed)	N
613	chr6_mann_hap4	3799302	3799303	rs76733997	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DRB9	rs76733997-A	NR	3E-13		0.0290897	[0.021-0.037] unit decrease	Affymetrix [323858] (imputed)	N
613	chr6_mann_hap4	3799565	3799566	rs112112734	31596875	Traylor M	2019-10-09	PLoS One	Genetic associations with radiological damage in rheumatoid arthritis: Meta-analysis of seven genome-wide association studies of 2,775 cases.	Joint damage in rheumatoid arthritis	2,527 European ancestry individuals, 196 African ancestry individuals, 52 individuals	NA	6p21.32	HLA-DRB5, HLA-DRB6, HLA-DRB1	rs112112734-?	NR	4E-8				Affymetrix, Illumina [4802696] (imputed)	N
613	chr6_mann_hap4	3799565	3799566	rs112112734	31596875	Traylor M	2019-10-09	PLoS One	Genetic associations with radiological damage in rheumatoid arthritis: Meta-analysis of seven genome-wide association studies of 2,775 cases.	Joint damage in rheumatoid arthritis	2,527 European ancestry individuals	NA	6p21.32	intergenic	rs112112734-?	NR	9E-8				Affymetrix, Illumina [2723488] (imputed)	N
613	chr6_mann_hap4	3799648	3799649	rs112062732	32723749	Kwon YC	2020-07-28	Ann Rheum Dis	Genome-wide association study in a Korean population identifies six novel susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis	4,068 Korean ancestry cases, 36,487 Korean ancestry controls	NA	6p21.32	HLA-DRB1	rs112062732-?		6E-227		2.44	[2.31-2.58]	Illumina [NR] (imputed)	N
613	chr6_mann_hap4	3799648	3799649	rs112062732	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	6p21.32	intergenic	rs112062732-C	0.4128	3E-30		0.04384147	[0.036-0.051] unit increase	Affymetrix [~ 2500000] (imputed)	N
614	chr6_mann_hap4	3826391	3826392	rs117317282	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.32	HLA-DRB5	rs117317282-T	0.03162	1E-12		0.058178984	[0.042-0.074] unit decrease	Affymetrix [93095623] (imputed)	N
614	chr6_mann_hap4	3827945	3827946	rs114812317	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.32	HLA-DRB5, HLA-DRB6	rs114812317-?		3E-10		1.1363636	[1.09-1.18]	Affymetrix, Illumina [NR]	N
614	chr6_mann_hap4	3828125	3828126	rs11967891	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	6p21.32	HLA-DRB5	rs11967891-A	0.816158	7E-30		0.0293508	[0.024-0.034] unit increase	Affymetrix [NR] (imputed)	N
614	chr6_mann_hap4	3828308	3828309	rs2157337	21156761	Padyukov L	2010-12-14	Ann Rheum Dis	A genome-wide association study suggests contrasting associations in ACPA-positive versus ACPA-negative rheumatoid arthritis.	Rheumatoid arthritis	1,147 European ancestry ACPA positive RA cases, 774 European ancestry ACPA negative RA cases, 1,079 European ancestry controls	887 European ancestry ACPA positive RA cases, 1,218 European ancestry controls	6p21.32	HLA	rs2157337-?	NR	9E-52	(ACPA-positive RA vs ACPA-negative RA)			Illumina [1723056] (imputed)	N
614	chr6_mann_hap4	3828409	3828410	rs112621731	34011352	Schwarm C	2021-05-19	Orphanet J Rare Dis	Identification of two novel bullous pemphigoid- associated alleles, HLA-DQA1*05:05 and -DRB1*07:01, in Germans.	Bullous pemphigoid	438 German cases, 417 German controls	NA	6p21.32	HLA-DRB5, HLA-DRB6	rs112621731-?	NR	6E-8		0.708733	[0.45-0.96] unit increase	Affymetrix [up to 386296] (imputed)	N
614	chr6_mann_hap4	3828511	3828512	rs67851010	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	TCRgd T cell Absolute Count	3,650 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs67851010-A	0.77135	2E-11		0.3066	[0.22-0.4] unit increase	Illumina [18427099] (imputed)	N
614	chr6_mann_hap4	3828557	3828558	rs72851020	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Naive CD8+ T cell Absolute Count	3,395 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs72851020-T	0.76839	4E-10		0.2077	[0.14-0.27] unit increase	Illumina [18332267] (imputed)	N
614	chr6_mann_hap4	3828791	3828792	rs115780495	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	SSC-A on myeloid Dendritic Cell	2,872 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs115780495-G	0.20794	4E-10		0.34	[0.23-0.45] unit increase	Illumina [17926605] (imputed)	N
614	chr6_mann_hap4	3828879	3828880	rs33997707	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	6p21.32		rs33997707-A	NR	1E-36		0.0422	[0.036-0.049] unit increase	Affymetrix, Illumina [20521447] (imputed)	N
614	chr6_mann_hap4	3829478	3829479	rs78533241	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DRB5	rs78533241-A	NR	2E-18		0.0263079	[0.02-0.032] unit decrease	Affymetrix [323123] (imputed)	N
614	chr6_mann_hap4	3829560	3829561	rs7747236	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6p21.32	HLA-DRB5	rs7747236-T	0.136236	2E-9		0.032500744	[0.022-0.043] unit increase	Affymetrix [93095623] (imputed)	N
614	chr6_mann_hap4	3830364	3830365	rs68174286	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR+ T cell Absolute Count	3,580 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs68174286-T	0.3045	7E-13		0.3263	[0.24-0.41] unit increase	Illumina [18377392] (imputed)	N
614	chr6_mann_hap4	3831001	3831002	rs541803504	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs541803504-T	0.176	4E-26	(Complement C4, C4A.C4B.4481.34.2)	0.38	[0.3-0.46] unit increase	Affymetrix [10572788] (imputed)	N
614	chr6_mann_hap4	3834082	3834083	rs568551048	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	6p21.32	HLA-DRB5	rs568551048-A	0.412962	1E-22		0.0205075	[0.016-0.025] unit decrease	Affymetrix [NR] (imputed)	N
614	chr6_mann_hap4	3834611	3834612	rs67382147	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Intraocular pressure	101,939 European ancestry cases	NA	6p21.32	NR	rs67382147-G		4E-8		0.11	[0.071-0.149] unit increase	NR [NR]	N
614	chr6_mann_hap4	3834867	3834868	rs78316776	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	6p21.32	intergenic	rs78316776-T	NR	2E-6				Illumina [up to 11995908] (imputed)	N
614	chr6_mann_hap4	3837241	3837242	rs72492309	30898391	Lawrenson K	2019-03-19	Gynecol Oncol	Genome-wide association studies identify susceptibility loci for epithelial ovarian cancer in east Asian women.	Epithelial ovarian cancer	3,238 East Asian ancestry cases, 4,083 East Asian ancestry controls	NA	6p21.32		rs72492309-?	NR	2E-6	(serous)	1.27		Illumina [11595112] (imputed)	N
614	chr6_mann_hap4	3837702	3837703	rs182908437	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.32	intergenic	rs182908437-?		3E-11		1.1494253	[1.1-1.2]	Affymetrix, Illumina [NR]	N
614	chr6_mann_hap4	3839312	3839313	rs28584364	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4 on naive CD4+ T cell	2,910 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs28584364-T	0.57221	1E-8		0.3238	[0.21-0.44] unit increase	Illumina [17945511] (imputed)	N
614	chr6_mann_hap4	3839312	3839313	rs28584364	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4 on Central Memory CD4+ T cell	2,912 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs28584364-T	0.57218	3E-10		0.3333	[0.23-0.44] unit increase	Illumina [17945888] (imputed)	N
614	chr6_mann_hap4	3839312	3839313	rs28584364	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4 on CD45RA+ CD4+ T cell	2,911 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs28584364-T	0.57219	2E-11		0.3526	[0.25-0.46] unit increase	Illumina [17945546] (imputed)	N
614	chr6_mann_hap4	3839312	3839313	rs28584364	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4 on CD4+ T cell	2,912 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs28584364-T	0.57218	5E-12		0.3639	[0.26-0.47] unit increase	Illumina [17945888] (imputed)	N
614	chr6_mann_hap4	3839406	3839407	rs562852671	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	RNU1-61P	rs562852671-T	NR	2E-11		0.0215915	[0.015-0.028] unit decrease	Affymetrix [323858] (imputed)	N
614	chr6_mann_hap4	3839406	3839407	rs562852671	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	RNU1-61P	rs562852671-T	NR	2E-11		0.0216706	[0.015-0.028] unit decrease	Affymetrix [127266] (imputed)	N
614	chr6_mann_hap4	3842595	3842596	rs111945767	26562150	Seldin MF	2015-10-10	Mol Med	Genome-wide Association Study of Late-Onset Myasthenia Gravis: Confirmation of TNFRSF11A, and Identification of ZBTB10 and Three Distinct HLA Associations.	Late-onset myasthenia gravis	532 European ancestry cases, 2,128 European ancestry controls	NA	6p21.32	MHC_Class II	rs111945767-G	0.38	3E-17		1.923077	[1.64-2.27]	Illumina [6175472] (imputed)	N
614	chr6_mann_hap4	3843983	3843984	rs138453460	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	6p21.32		rs138453460-G	0.942891	1E-8		0.0549043	[0.036-0.074] unit increase	NR [11722792] (imputed)	N
614	chr6_mann_hap4	3844558	3844559	rs28490179	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	RNU1-61P	rs28490179-C	NR	1E-9		0.0229135	[0.016-0.03] unit increase	Affymetrix [321016] (imputed)	N
614	chr6_mann_hap4	3846436	3846437	rs3828840	23472185	Mero IL	2013-03-05	PLoS One	Oligoclonal band status in Scandinavian multiple sclerosis patients is associated with specific genetic risk alleles.	Multiple sclerosis (OCB status)	1,367 European ancestry OCB positive cases, 161 European ancestry OCB negative cases, 428 European ancestry controls	NA	6p21.32	HLA-DRB1	rs3828840-?	NR	5E-15	(OCB positive vs. controls)	1.94	[1.64-2.29]	Illumina [495970]	N
614	chr6_mann_hap4	3847667	3847668	rs35467127	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DRB6	rs35467127-T	NR	1E-13		0.0263989	[0.019-0.033] unit increase	Affymetrix [319769] (imputed)	N
614	chr6_mann_hap4	3847667	3847668	rs35467127	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DRB6	rs35467127-T	NR	2E-13		0.0262282	[0.019-0.033] unit increase	Affymetrix [319769] (imputed)	N
614	chr6_mann_hap4	3847667	3847668	rs35467127	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DRB6	rs35467127-T	NR	1E-10		0.0232493	[0.016-0.03] unit increase	Affymetrix [321169] (imputed)	N
614	chr6_mann_hap4	3847667	3847668	rs35467127	33549134	Adolphe C	2021-02-06	Genome Med	Genetic and functional interaction network analysis reveals global enrichment of regulatory T cell genes influencing basal cell carcinoma susceptibility.	Basal cell carcinoma	17,416 European ancestry cases, 375,455 European ancestry controls	NA	6p21.32	HLA-DRB6	rs35467127-T	0.190482	7E-12		0.09424036	[0.067-0.121] unit increase	Affymetrix [7260263] (imputed)	N
614	chr6_mann_hap4	3850351	3850352	rs144660248	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.32	HLA-DRB1, HLA-DRB5, HLA-DRB6	rs144660248-?		6E-13		1.1764705	[1.12-1.23]	Affymetrix, Illumina [NR]	N
615	chr6_mann_hap4	4013042	4013043	rs28366255	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs28366255-T	0.284	1E-14	(Complement C4, C4A.C4B.4481.34.2)	0.24	[0.18-0.3] unit increase	Affymetrix [10572788] (imputed)	N
615	chr6_mann_hap4	4013233	4013234	rs34434863	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	6p21.32		rs34434863-G	NR	2E-30		0.0254	[0.021-0.03] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
615	chr6_mann_hap4	4013312	4013313	rs28366266	29903748	Debiec H	2018-06-14	J Am Soc Nephrol	Transethnic, Genome-Wide Analysis Reveals Immune-Related Risk Alleles and Phenotypic Correlates in Pediatric Steroid-Sensitive Nephrotic Syndrome.	Childhood steroid-sensitive nephrotic syndrome	244 European ancestry cases, 2,552 European ancestry controls, 56 African cases, 454 African controls, 85 Maghrebian cases, 261 Maghrebian controls	NA	6p21.32	HLA-DRB1	rs28366266-C	0.17	4E-20		3.03	[2.40-3.85]	Illumina [at least 7529344] (imputed)	N
615	chr6_mann_hap4	4013312	4013313	rs28366266	29903748	Debiec H	2018-06-14	J Am Soc Nephrol	Transethnic, Genome-Wide Analysis Reveals Immune-Related Risk Alleles and Phenotypic Correlates in Pediatric Steroid-Sensitive Nephrotic Syndrome.	Childhood steroid-sensitive nephrotic syndrome	132 European ancestry cases, 2,000 European ancestry controls	NA	6p21.32	HLA-DRB1	rs28366266-?	0.17	6E-6		2.25	[1.59-3.2]	Illumina [at least 7529344] (imputed)	N
615	chr6_mann_hap4	4013323	4013324	rs9270539	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	Systemic lupus erythematosus	1,639 East Asian ancestry cases, 2,410 East Asian ancestry controls	NA			rs9270539-C	NR	4E-36		0.5741	[0.48-0.66] unit decrease	Illumina [NR] (imputed)	N
615	chr6_mann_hap4	4013844	4013845	rs28366282	33766948	Zhu Z	2021-03-25	Eur Respir J	A large-scale genome-wide association analysis of lung function in the Chinese population identifies novel loci and highlights shared genetic etiology with obesity.	Lung function (FVC)	100,285 Chinese ancestry individuals	NA	6p21.32		rs28366282-C	0.76	3E-11		0.035	[0.025-0.045] L increase	Affymetrix [NR] (imputed)	N
615	chr6_mann_hap4	4014037	4014038	rs34415150	33510174	Jones G	2021-01-28	Nat Commun	Genome-wide meta-analysis of muscle weakness identifies 15 susceptibility loci in older men and women.	Low hand grip strength (60 years and older) (FNIH)	20,335 European ancestry cases, 236,188 European ancestry controls	NA	6p21.32	HLA-DRB1	rs34415150-G	0.18	6E-16		0.1158	unit increase	Affymetrix, Illumina [9465622] (imputed)	N
615	chr6_mann_hap4	4014037	4014038	rs34415150	33510174	Jones G	2021-01-28	Nat Commun	Genome-wide meta-analysis of muscle weakness identifies 15 susceptibility loci in older men and women.	Low hand grip strength (60 years and older) (EWGSOP)	48,596 European ancestry cases, 207,927 European ancestry controls	NA	6p21.32	HLA-DRB1	rs34415150-A	0.822	4E-17		0.0833	[0.064-0.103] unit decrease	Affymetrix, Illumina [9457422] (imputed)	N
615	chr6_mann_hap4	4014037	4014038	rs34415150	33510174	Jones G	2021-01-28	Nat Commun	Genome-wide meta-analysis of muscle weakness identifies 15 susceptibility loci in older men and women.	Low hand grip strength (60 years and older) (EWGSOP)	34,589 European ancestry female cases, 100,879 European ancestry female controls	NA	6p21.32	HLA-DRB1	rs34415150-G	0.18	1E-16		0.1001	unit increase	Affymetrix, Illumina [9449805] (imputed)	N
615	chr6_mann_hap4	4014037	4014038	rs34415150	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	6p21.32	NR	rs34415150-A	0.815874	2E-52		0.0399601	[0.035-0.045] unit decrease	NR [NR]	N
615	chr6_mann_hap4	4014190	4014191	rs35118762	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (immunosuppressants)	3,954 European ancestry cases, 268,648 European ancestry controls, 3,483 East Asian ancestry cases, 175,243 East Asian ancestry controls	NA	6p21.32		rs35118762-T	NR	1E-120		0.4878	[0.45-0.53] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
615	chr6_mann_hap4	4014311	4014312	rs7768875	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on IgD+ CD38+ B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs7768875-T	0.47719	3E-8		0.1706	[0.11-0.23] unit decrease	Illumina [18238311] (imputed)	N
615	chr6_mann_hap4	4014330	4014331	rs2760975	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	6p21.32	HLA-DRB1	rs2760975-A	0.168	5E-12		0.003	[0.0022-0.0038] unit decrease	Affymetrix [15275733] (imputed)	N
615	chr6_mann_hap4	4014330	4014331	rs2760975	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	223,215 British ancestry individuals	111,610 British ancestry individuals	6p21.32	HLA-DRB1	rs2760975-A	0.17	1E-9		0.003	[0.002-0.004] unit decrease	Affymetrix [15275733] (imputed)	N
615	chr6_mann_hap4	4014388	4014389	rs28366297	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	6p21.32		rs28366297-C	0.30822	1E-6		0.035757	[0.021-0.05] unit increase	Affymetrix [15580782] (imputed)	N
615	chr6_mann_hap4	4014429	4014430	rs28366299	33143745	Andlauer TFM	2020-11-04	BMC Med	Treatment- and population-specific genetic risk factors for anti-drug antibodies against interferon-beta: a GWAS.	Neutralising antibody response to interferon beta therapy in multiple sclerosis (presence of antibodies; IFN?-1b subcutaneous)	up to 2,000 German and Swedish ancestry individuals	up to 757 German and Swedish ancestry individuals	6p21.32		rs28366299-A	0.19	7E-19		1.27	[1.0-1.54] unit increase	Illumina [8550834] (imputed)	N
615	chr6_mann_hap4	4014442	4014443	rs28366301	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	High density lipoprotein cholesterol levels	70,657 Japanese ancestry individuals	NA	6p21.32	HLA-DRB1, HLA-DQA1	rs28366301-?	NR	8E-11		0.03687	[0.026-0.048] unit increase novel	Illumina [6108953] (imputed)	N
615	chr6_mann_hap4	4014626	4014627	rs9270576	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	78,744 East Asian ancestry individuals	NA	6p21.32	NR	rs9270576-C	0.620915	3E-28		0.071855	[0.059-0.085] SD units increase	Affymetrix, Illumina [16289093] (imputed)	N
615	chr6_mann_hap4	4014841	4014842	rs35525122	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on myeloid Dendritic Cell	2,872 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs35525122-A	0.10869	1E-65		0.8525	[0.76-0.95] unit increase	Illumina [17926605] (imputed)	N
615	chr6_mann_hap4	4014858	4014859	rs9270585	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on CD14+ monocyte	3,629 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9270585-T	0.5757300000000001	6E-92		0.5871	[0.53-0.64] unit decrease	Illumina [18218967] (imputed)	N
615	chr6_mann_hap4	4014858	4014859	rs9270585	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on CD14+ CD16- monocyte	3,629 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9270585-T	0.5757300000000001	3E-98		0.6054	[0.55-0.66] unit decrease	Illumina [18218967] (imputed)	N
615	chr6_mann_hap4	4014885	4014886	rs9270588	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on monocyte	3,629 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9270588-T	0.5771	3E-78		0.5388	[0.48-0.59] unit decrease	Illumina [18218967] (imputed)	N
615	chr6_mann_hap4	4014885	4014886	rs9270588	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on CD33+ HLA DR+ CD14dim	1,578 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9270588-T	0.43503	8E-26		0.4302	[0.35-0.51] unit decrease	Illumina [16958370] (imputed)	N
615	chr6_mann_hap4	4014885	4014886	rs9270588	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on CD33+ HLA DR+ CD14-	1,579 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9270588-T	0.43507	2E-49		0.5992	[0.52-0.68] unit decrease	Illumina [16961968] (imputed)	N
615	chr6_mann_hap4	4014928	4014929	rs35139284	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Rheumatoid arthritis	8,255 European ancestry cases, 409,001 European ancestry controls, 5,348 East Asian ancestry cases, 173,268 East Asian ancestry controls	NA	6p21.32		rs35139284-T	NR	4E-287		0.5387	[0.51-0.57] unit increase	Affymetrix, Illumina [25835038] (imputed)	N
615	chr6_mann_hap4	4014928	4014929	rs35139284	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DRB1	rs35139284-T	NR	4E-17		0.0253723	[0.019-0.031] unit increase	Affymetrix [319769] (imputed)	N
615	chr6_mann_hap4	4014928	4014929	rs35139284	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DRB1	rs35139284-T	NR	8E-11		0.0218487	[0.015-0.028] unit increase	Affymetrix [323858] (imputed)	N
615	chr6_mann_hap4	4014928	4014929	rs35139284	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DRB1	rs35139284-T	NR	1E-16		0.0250062	[0.019-0.031] unit increase	Affymetrix [319769] (imputed)	N
615	chr6_mann_hap4	4014928	4014929	rs35139284	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	HLA-DRB1	rs35139284-T	NR	4E-10		0.0210099	[0.014-0.028] unit increase	Affymetrix [127266] (imputed)	N
615	chr6_mann_hap4	4014928	4014929	rs35139284	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	HLA-DRB1	rs35139284-T	NR	1E-8		0.0174619	[0.011-0.023] unit increase	Affymetrix [321114] (imputed)	N
615	chr6_mann_hap4	4014928	4014929	rs35139284	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DRB1	rs35139284-T	NR	5E-16		0.0247016	[0.019-0.031] unit increase	Affymetrix [321169] (imputed)	N
615	chr6_mann_hap4	4014928	4014929	rs35139284	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	6p21.32	HLA-DRB1, HLA-DQA1	rs35139284-T	0.32	7E-23		9.85	z-score increase	Affymetrix [4311822] (imputed)	N
615	chr6_mann_hap4	4014928	4014929	rs35139284	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on B cell	3,660 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs35139284-T	0.40599	4E-10		0.183	[0.13-0.24] unit increase	Illumina [18238700] (imputed)	N
615	chr6_mann_hap4	4014933	4014934	rs201291779	34108613	Ivarsdottir EV	2021-06-09	Commun Biol	The genetic architecture of age-related hearing impairment revealed by genome-wide association analysis.	Age-related hearing impairment	121,934 European ancestry cases, 591,699 European ancestry controls	NA	6p21.32	HLA-DRB1	rs201291779-T	1.58	5E-14	(additive)	1.15	[NR]	Affymetrix, Illumina [46900000] (imputed)	N
615	chr6_mann_hap4	4014982	4014983	rs9270591	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Monocytic Myeloid-Derived Suppressor Cells Absolute Count	1,855 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9270591-T	0.43396	5E-26		0.4161	[0.34-0.49] unit increase	Illumina [17197940] (imputed)	N
615	chr6_mann_hap4	4014982	4014983	rs9270591	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR++ monocyte %leukocyte	3,595 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9270591-T	0.5705100000000001	7E-18		0.2715	[0.21-0.33] unit decrease	Illumina [18380843] (imputed)	N
615	chr6_mann_hap4	4014982	4014983	rs9270591	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on Hematopoietic Stem Cell	1,634 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9270591-T	0.43702	3E-48		0.5658	[0.49-0.64] unit decrease	Illumina [16999215] (imputed)	N
615	chr6_mann_hap4	4015214	4015215	rs9270599	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on B cell	3,060 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9270599-A	0.62618	3E-65		0.5573	[0.49-0.62] unit increase	Illumina [18012789] (imputed)	N
615	chr6_mann_hap4	4015818	4015819	rs28366348	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	6p21.32		rs28366348-A	0.728713	1E-9		0.0290399	[0.02-0.038] unit increase	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4015888	4015889	rs35372932	35023831	Chong M	2022-01-13	Elife	GWAS and ExWAS of blood Mitochondrial DNA copy number identifies 71 loci and highlights a potential causal role in dementia.	Mitochondrial DNA copy number	395,718 British, Irish, Other White, South Asian, African ancestry individuals	NA	6p21.32	NR	rs35372932-T	0.170327	4E-9		0.0251	[0.017-0.034] unit decrease	Affymetrix [23037915] (imputed)	N
615	chr6_mann_hap4	4016041	4016042	rs28366357	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DRB1	rs28366357-T	NR	4E-11		0.0208439	[0.015-0.027] unit decrease	Affymetrix [323123] (imputed)	N
615	chr6_mann_hap4	4016104	4016105	rs2760980	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on CD33- HLA DR+	1,635 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs2760980-A	0.10748	2E-60		1.049	[0.93-1.17] unit increase	Illumina [16999305] (imputed)	N
615	chr6_mann_hap4	4016116	4016117	rs28366362	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.32		rs28366362-C	0.409768	4E-26		0.029002981	[0.024-0.034] unit increase	Affymetrix [93095623] (imputed)	N
615	chr6_mann_hap4	4016369	4016370	rs2760981	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.32	BTNL2, C6orf10, HCG23, HLA-DQA1, HLA-DRA, HLA-DRB1, HLA-DRB5, HLA-DRB6	rs2760981-?		4E-11		1.0752687	[1.05-1.1]	Affymetrix, Illumina [NR]	N
615	chr6_mann_hap4	4016459	4016460	rs9270632	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.32		rs9270632-G	0.676	3E-48				Affymetrix [10369434] (imputed)	N
615	chr6_mann_hap4	4016576	4016577	rs9270637	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs9270637-G	0.293	9E-20	(Complement C4, C4A.C4B.4481.34.2)	0.24	[0.18-0.3] unit decrease	Affymetrix [10572788] (imputed)	N
615	chr6_mann_hap4	4016578	4016579	rs28383169	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	6p21.32		rs28383169-G	0.44037	4E-19		0.0246375	[0.019-0.03] unit decrease	Illumina [13479924] (imputed)	N
615	chr6_mann_hap4	4016691	4016692	rs117726495	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs affecting bone structure and mineralization)	7,870 European ancestry cases, 207,798 European ancestry controls, 6,143 East Asian ancestry cases, 172,583 East Asian ancestry controls	NA	6p21.32		rs117726495-A	NR	8E-16		0.2102	[0.16-0.26] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
615	chr6_mann_hap4	4016730	4016731	rs9270647	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DRB1	rs9270647-C	NR	9E-12		0.0207928	[0.015-0.027] unit decrease	Affymetrix [319769] (imputed)	N
615	chr6_mann_hap4	4016730	4016731	rs9270647	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DRB1	rs9270647-C	NR	2E-12		0.0216513	[0.016-0.028] unit decrease	Affymetrix [321169] (imputed)	N
615	chr6_mann_hap4	4016733	4016734	rs9270649	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DRB1	rs9270649-A	NR	2E-11		0.0205577	[0.015-0.027] unit decrease	Affymetrix [319769] (imputed)	N
615	chr6_mann_hap4	4017021	4017022	rs2647078	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs2647078-C	0.806	9E-21		0.803	[0.76-0.85]	Illumina [11270530] (imputed)	N
615	chr6_mann_hap4	4017498	4017499	rs4329147	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	6p21.32	HLA-DRB1	rs4329147-T	0.83	1E-11		1.11	[1.09-1.13]	Illumina [at least 560000] (imputed)	N
615	chr6_mann_hap4	4017498	4017499	rs4329147	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	6p21.32	HLA-DRB5, HLA-DQA1	rs4329147-?	NR	1E-11		1.111	[1.078-1.146]	Illumina [13754664] (imputed)	N
615	chr6_mann_hap4	4018179	4018180	rs687308	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (immunosuppressants)	3,954 European ancestry cases, 268,648 European ancestry controls	NA	6p21.32	HLA-DRB1	rs687308-T	0.191895	2E-84		0.5610923	[0.5-0.62] unit increase	Affymetrix [7288503] (imputed)	N
615	chr6_mann_hap4	4019059	4019060	rs7450706	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	6p21.32		rs7450706-T	0.046397	4E-13		0.040589344	[0.03-0.052] unit decrease	Affymetrix [93095623] (imputed)	N
615	chr6_mann_hap4	4019212	4019213	rs9270747	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)(bidirectional)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs9270747-A	NR	2E-32				Affymetrix [7846216] (imputed)	N
615	chr6_mann_hap4	4019266	4019267	rs9270750	26956414	Berndt SI	2016-03-09	Nat Commun	Meta-analysis of genome-wide association studies discovers multiple loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	3,100 European ancestry cases, 7,667 European ancestry controls	1,958 cases,  5,530 controls	6p21.32	HLA-DQB1, HLA-DRB1, HLA-DRB5	rs9270750-A	0.543	6E-16		1.32	[1.23-1.41]	Affymetrix, Illumina [~ 8500000] (imputed)	N
615	chr6_mann_hap4	4019964	4019965	rs9270779	29769521	Ramirez J	2018-05-16	Nat Commun	Thirty loci identified for heart rate response to exercise and recovery implicate autonomic nervous system.	Heart rate response to exercise	up to 35,455 European ancestry females, up to 31,802 European ancestry males	NA	6p21.32	HLA-DRB5, HLA-DRB1	rs9270779-T	0.323	1E-8	(females)	0.538	[0.35-0.72] bpm decrease	Affymetrix [~ 7800000] (imputed)	N
615	chr6_mann_hap4	4020210	4020211	rs9270798	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DRB1	rs9270798-A	NR	2E-8		0.0191935	[0.013-0.026] unit decrease	Affymetrix [319769] (imputed)	N
615	chr6_mann_hap4	4020361	4020362	rs140177540	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p21.32	HLA-DRB1	rs140177540-?	0.47	5E-15		1.06	[1.05-1.07]	Illumina [at least 560000] (imputed)	N
615	chr6_mann_hap4	4020599	4020600	rs477515	25817017	Carmona FD	2015-03-26	Am J Hum Genet	A large-scale genetic analysis reveals a strong contribution of the HLA class II region to giant cell arteritis susceptibility.	Giant cell arteritis	1,651 European ancestry cases, 15,306 European ancestry controls	NA	6p21.32	HLA-DRB1, HLA-DQA1	rs477515-?		4E-40		1.73	[1.59-1.87]	Illumina [95416]	N
615	chr6_mann_hap4	4020599	4020600	rs477515	24282030	Pan L	2013-11-28	Hum Mol Genet	A genome-wide association study identifies polymorphisms in the HLA-DR region associated with non-response to hepatitis B vaccination in Chinese Han populations.	Hepatitis B vaccine response	108 Han Chinese ancestry high-responder cases, 77 Han Chinese ancestry non-responder controls	1,336 Han Chinese ancestry high-responder cases, 420 Han Chinese ancestry non-responder controls	6p21.32	HLA-DRA, BTNL2, HLA-DRB1, C6orf10	rs477515-T	0.442	3E-19		2.05	[1.75-2.41]	Illumina [588026]	N
615	chr6_mann_hap4	4020599	4020600	rs477515	23326239	Rubicz R	2013-01-10	PLoS Genet	A genome-wide integrative genomic study localizes genetic factors influencing antibodies against Epstein-Barr virus nuclear antigen 1 (EBNA-1).	Epstein-Barr virus immune response (EBNA-1)	1,367 Mexican American indivduals	589 Mexican American indivduals	6p21.32	HLA-DRB1	rs477515-T	0.32	3E-13	(Quantitative)	0.28	[NR] unit decrease	Illumina [944565]	N
615	chr6_mann_hap4	4020599	4020600	rs477515	18758464	Kugathasan S	2008-08-31	Nat Genet	Loci on 20q13 and 21q22 are associated with pediatric-onset inflammatory bowel disease.	Inflammatory bowel disease	1,011 European ancestry cases, 4,250 European ancestry controls	1,922 European ancestry cases, 14,124 European ancestry controls	6p21.32	HLA-DQA1	rs477515-?	0.69	1E-8		1.38	[1.23-1.54]	Illumina [NR]	N
615	chr6_mann_hap4	4020838	4020839	rs116763083	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	HLA-DRB1	rs116763083-A	0.026	4E-16	(C-C motif chemokine 19, CCL19.4922.13.1)	0.63	[0.47-0.79] unit increase	Affymetrix [10572788] (imputed)	N
615	chr6_mann_hap4	4021213	4021214	rs34039593	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on plasmacytoid Dendritic Cell	2,872 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs34039593-G	0.11165	6E-146		1.217	[1.13-1.3] unit increase	Illumina [17926607] (imputed)	N
615	chr6_mann_hap4	4021213	4021214	rs34039593	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on Dendritic Cell	2,871 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs34039593-G	0.11169	4E-110		1.075	[0.98-1.17] unit increase	Illumina [17926566] (imputed)	N
615	chr6_mann_hap4	4021213	4021214	rs34039593	29534301	Nishida N	2018-03-13	Hepatology	Key HLA-DRB1-DQB1 haplotypes and role of the BTNL2 gene for response to a hepatitis B vaccine.	Response to hepatitis B vaccine	107 Japanese ancestry low responder individuals, 351 Japanese ancestry intermediate responder individuals, 735 Japanese ancestry high responder individuals	NA	6p21.32	HLA-DQA1	rs34039593-?		6E-12		0.2	unit increase	Affymetrix [427664]	N
615	chr6_mann_hap4	4021302	4021303	rs2516049	31596875	Traylor M	2019-10-09	PLoS One	Genetic associations with radiological damage in rheumatoid arthritis: Meta-analysis of seven genome-wide association studies of 2,775 cases.	Joint damage in rheumatoid arthritis	2,527 European ancestry individuals	NA	6p21.32	intergenic	rs2516049-?	NR	3E-6	(adjusted for rheumatoid factor)			Affymetrix, Illumina [2723488] (imputed)	N
615	chr6_mann_hap4	4021302	4021303	rs2516049	31375628	Tengvall K	2019-08-02	Proc Natl Acad Sci U S A	Molecular mimicry between Anoctamin 2 and Epstein-Barr virus nuclear antigen 1 associates with multiple sclerosis risk.	Anti-anoctamin 2 antibody levels	11,936 European ancestry individuals	NA	6p21.32	NR	rs2516049-G	NR	7E-15		0.092	[0.065-0.119] unit decrease	Illumina [615763]	N
615	chr6_mann_hap4	4021302	4021303	rs2516049	26819262	Zhou Y	2016-01-27	Mult Scler	Genetic loci for Epstein-Barr virus nuclear antigen-1 are associated with risk of multiple sclerosis.	Epstein Barr virus nuclear antigen 1 IgG levels	1,243 parents and up to 2,356 children from 992 families, 1,956 Mexican American individuals		6p21.32	NR	rs2516049-T		6E-14	(Mexican American)	0.204	unit increase	Illumina [up to 2428201] (imputed)	N
615	chr6_mann_hap4	4021302	4021303	rs2516049	26819262	Zhou Y	2016-01-27	Mult Scler	Genetic loci for Epstein-Barr virus nuclear antigen-1 are associated with risk of multiple sclerosis.	Epstein Barr virus nuclear antigen 1 IgG levels	1,243 parents and up to 2,356 children from 992 families, 1,956 Mexican American individuals		6p21.32	NR	rs2516049-T		4E-9	(non-Mexican American)	0.204	unit increase	Illumina [up to 2428201] (imputed)	N
615	chr6_mann_hap4	4021302	4021303	rs2516049	26819262	Zhou Y	2016-01-27	Mult Scler	Genetic loci for Epstein-Barr virus nuclear antigen-1 are associated with risk of multiple sclerosis.	Epstein Barr virus nuclear antigen 1 IgG levels	1,243 parents and up to 2,356 children from 992 families, 1,956 Mexican American individuals		6p21.32	NR	rs2516049-T		3E-20		0.204	unit increase	Illumina [up to 2428201] (imputed)	N
615	chr6_mann_hap4	4021303	4021304	rs2454138	29521573	Buck D	2018-03-01	Mult Scler	Effect of HLA-DRB1 alleles and genetic variants on the development of neutralizing antibodies to interferon beta in the BEYOND and BENEFIT trials.	Neutralising antibody response to interferon beta therapy in multiple sclerosis (mean antibody levels)	926 European ancestry individuals, 7 Hispanic individuals, 1 Asian ancestry individuals, 1 African ancestry individual, 4 other unknown ancestry individuals, 2 individuals	NA	6p21.32	intergenic	rs2454138-A	0.22	5E-19		0.41	[0.31-0.51] unit increase	Affymetrix [8671751] (imputed)	N
615	chr6_mann_hap4	4021303	4021304	rs2454138	29521573	Buck D	2018-03-01	Mult Scler	Effect of HLA-DRB1 alleles and genetic variants on the development of neutralizing antibodies to interferon beta in the BEYOND and BENEFIT trials.	Neutralising antibody response to interferon beta therapy in multiple sclerosis (maximum antibody levels)	926 European ancestry individuals, 7 Hispanic individuals, 1 Asian ancestry individuals, 1 African ancestry individual, 4 other unknown ancestry individuals, 2 individuals	NA	6p21.32	intergenic	rs2454138-A	0.22	1E-18		0.41	unit increase	Affymetrix [8671751] (imputed)	N
615	chr6_mann_hap4	4021303	4021304	rs2454138	29521573	Buck D	2018-03-01	Mult Scler	Effect of HLA-DRB1 alleles and genetic variants on the development of neutralizing antibodies to interferon beta in the BEYOND and BENEFIT trials.	Neutralising antibody response to interferon beta therapy in multiple sclerosis (area under the curve for the first two years)	926 European ancestry individuals, 7 Hispanic individuals, 1 Asian ancestry individuals, 1 African ancestry individual, 4 other unknown ancestry individuals, 2 individuals	NA	6p21.32	intergenic	rs2454138-A	0.22	8E-19		0.41	[0.31-0.51] unit increase	Affymetrix [8671751] (imputed)	N
615	chr6_mann_hap4	4021319	4021320	rs2647062	32201043	Smeland OB	2020-02-08	Biol Psychiatry	Genome-wide Association Analysis of Parkinson's Disease and Schizophrenia Reveals Shared Genetic Architecture and Identifies Novel Risk Loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	NA	6p21.32	HLA-DRB1	rs2647062-A		6E-12		0.143	[0.1-0.18] unit increase	Illumina [NR]	N
615	chr6_mann_hap4	4021319	4021320	rs2647062	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	148,164 European ancestry individuals	NA	6p21.32	HLA-DRB1	rs2647062-A	0.84	1E-11	(BMI-adjusted)	0.048	[0.034-0.062] unit decrease	Affymetrix, Illumina, Perlegen [10019203] (imputed)	N
615	chr6_mann_hap4	4021472	4021473	rs558721	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD64 on CD14- CD16-	3,622 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs558721-T	0.07623	2E-8		0.3331	[0.22-0.45] unit increase	Illumina [18215199] (imputed)	N
615	chr6_mann_hap4	4021765	4021766	rs556025	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	6p21.32		rs556025-T	0.35263	3E-8		0.039419	[0.025-0.053] unit increase	Affymetrix [15580782] (imputed)	N
615	chr6_mann_hap4	4021866	4021872	rs749637599	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hearing loss, difficulty in hearing	14,654 European ancestry cases, 474,839 European ancestry controls, 3,400 East Asian ancestry cases, 175,326 East Asian ancestry controls	NA	6p21.32		rs749637599-G	NR	3E-12		0.174	[0.13-0.22] unit increase	Affymetrix, Illumina [25845022] (imputed)	N
615	chr6_mann_hap4	4022206	4022207	rs9270878	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	HLA-DRB1	rs9270878-A	NR	9E-10		0.0181825	[0.012-0.024] unit decrease	Affymetrix [321114] (imputed)	N
615	chr6_mann_hap4	4022436	4022437	rs9270891	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs9270891-G	0.159	6E-35	(Ubiquitin carboxyl-terminal hydrolase 25, USP25.9215.117.3)	0.41	[0.35-0.47] unit increase	Affymetrix [10572788] (imputed)	N
615	chr6_mann_hap4	4022568	4022569	rs17425622	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PLXDC2	5,360 Icelandic ancestry individuals	NA	6p21.32		rs17425622-C	0.1783	1E-21		0.224277	[0.18-0.27] unit decrease	Illumina [7506463] (imputed)	N
615	chr6_mann_hap4	4022568	4022569	rs17425622	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Parkinson's disease	9,619 European ancestry cases, 324,522 European ancestry controls	NA	6p21.32	HLA-DQA1, HLA-DRB5	rs17425622-?	NR	4E-17		1.235	[1.174-1.298]	Illumina [12438219] (imputed)	N
615	chr6_mann_hap4	4022711	4022712	rs34102154	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Non-Hodgkin's lymphoma	2,400 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs34102154-G	NR	1E-14		1.431	NR	Affymetrix [7846216] (imputed)	N
615	chr6_mann_hap4	4022807	4022808	rs9270911	33558538	Gebresilase T	2021-02-08	Sci Rep	Replication of HLA class II locus association with susceptibility to podoconiosis in three Ethiopian ethnic groups.	Podoconiosis	1,137 Ethiopian ancestry cases, 1,152 Ethiopian ancestry controls	NA	6p21.32	intergenic	rs9270911-T	0.44	2E-12				Illumina [2201695]	N
615	chr6_mann_hap4	4022807	4022808	rs9270911	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs9270911-?	NR	1E-27				Affymetrix [~ 8270000] (imputed)	N
615	chr6_mann_hap4	4023778	4023779	rs601006	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	HLA-DRB1	rs601006-A	NR	9E-10		0.0179058	[0.012-0.024] unit increase	Affymetrix [321114] (imputed)	N
615	chr6_mann_hap4	4024012	4024013	rs601945	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	6p21.32	MHC	rs601945-G	0.1775	5E-8		1.06	[1.04-1.08]	Affymetrix, Illumina [~ 27000000] (imputed)	N
615	chr6_mann_hap4	4024068	4024069	rs9270965	24204295	Han F	2013-10-31	PLoS Genet	Genome wide analysis of narcolepsy in China implicates novel immune loci and reveals changes in association prior to versus after the 2009 H1N1 influenza pandemic.	Narcolepsy (onset before 2009 H1N1 influenza pandemic)	up to 893 Chinese ancestry cases with onset before the 2009 H1N1 influenza pandemic, up to 373 Chinese ancestry cases with onset after the 2009 H1N1 influenza pandemic	NA	6p21.32	NR	rs9270965-?	NR	5E-12		1.72	[NR]	Affymetrix [603382]	N
615	chr6_mann_hap4	4024171	4024172	rs9270970	32771030	Tangtanatakul P	2020-08-08	Arthritis Res Ther	Meta-analysis of genome-wide association study identifies FBN2 as a novel locus associated with systemic lupus erythematosus in Thai population.	Systemic lupus erythematosus	487 Thai cases, 1,606 Thai controls	405 Thai cases, 1,590 Thai controls	6p21.32	HLA-DRB1, HLA-DQA1	rs9270970-G	0.42	4E-26		1.8293	[NR]	Illumina [421909] (imputed)	N
615	chr6_mann_hap4	4024225	4024226	rs144123929	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in IDL	115,082 European ancestry individuals	NA	6p21.32		rs144123929-C	0.971917	1E-8		0.0862226	[0.057-0.116] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4024226	4024227	rs602875	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DRB1	rs602875-G	NR	1E-8		0.0188152	[0.012-0.025] unit decrease	Affymetrix [319769] (imputed)	N
615	chr6_mann_hap4	4024226	4024227	rs602875	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DRB1	rs602875-G	NR	3E-8		0.0183289	[0.012-0.025] unit decrease	Affymetrix [319769] (imputed)	N
615	chr6_mann_hap4	4024226	4024227	rs602875	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DRB1	rs602875-G	NR	4E-9		0.0196908	[0.013-0.026] unit decrease	Affymetrix [321169] (imputed)	N
615	chr6_mann_hap4	4024226	4024227	rs602875	20018961	Zhang FR	2009-12-16	N Engl J Med	Genomewide association study of leprosy.	Leprosy	706 Han Chinese ancestry cases, 1,225 Han Chinese ancestry controls	3,254 Chinese ancestry cases, 5,955 Chinese ancestry controls	6p21.32	HLA-DR-DQ	rs602875-A	0.68	5E-27		1.61	[1.39-1.61]	Illumina [491883]	N
615	chr6_mann_hap4	4024511	4024512	rs2647071	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DRB1	rs2647071-T	NR	2E-8		0.0181138	[0.012-0.024] unit increase	Affymetrix [321169] (imputed)	N
615	chr6_mann_hap4	4024593	4024594	rs9270984	23273568	Yang W	2012-12-27	Am J Hum Genet	Meta-analysis followed by replication identifies loci in or near CDKN1B, TET3, CD80, DRAM1, and ARID5B as associated with systemic lupus erythematosus in Asians.	Systemic lupus erythematosus	1,656 Han Chinese ancestry cases, 3,394 Han Chinese ancestry controls	3,256 Han Chinese ancestry cases, 5,667 Han Chinese ancestry controls, 453 Thai ancestry cases, 963 Thai ancestry controls	6p21.32	HLA-DRB1	rs9270984-T	0.18	5E-24		1.73		Illumina [2100739] (imputed)	N
615	chr6_mann_hap4	4024662	4024663	rs9270986	25643325	Renton AE	2015-04-01	JAMA Neurol	A genome-wide association study of myasthenia gravis.	Myasthenia gravis	972 European ancestry cases, 1,977 European ancestry controls	423 European ancestry cases, 467 European ancestry controls	6p21.32	HLA-DRB1, HLA-DQA1	rs9270986-A	0.15	6E-8		1.43	[NR]	Illumina [8114394] (imputed)	N
615	chr6_mann_hap4	4024773	4024774	rs615672	33736632	Zeng Z	2021-03-18	BMC Med Genomics	Genome-wide association study identifies new loci associated with risk of HBV infection and disease progression.	Persistent hepatitis B virus infection	587 Chinese ancestry persistent cases, 275 Chinese ancestry clearance controls	NA	6p21.32	HLA-DRB1	rs615672-G	0.5276	9E-7		0.5697	NR	Affymetrix [607153]	N
615	chr6_mann_hap4	4024773	4024774	rs615672	33736632	Zeng Z	2021-03-18	BMC Med Genomics	Genome-wide association study identifies new loci associated with risk of HBV infection and disease progression.	Hepatitis B	460 Chinese ancestry cases, 169 Chinese ancestry controls	NA	6p21.32	HLA-DRB1	rs615672-?	NR	1E-6				Affymetrix [607153]	N
615	chr6_mann_hap4	4024773	4024774	rs615672	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.32	HLA-DRB1	rs615672-G	0.6531	2E-8	(EA)	0.0253	[0.016-0.034] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
615	chr6_mann_hap4	4024773	4024774	rs615672	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.32	HLA-DRB1	rs615672-G	0.6427	1E-8		0.0242	[0.016-0.032] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
615	chr6_mann_hap4	4024773	4024774	rs615672	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6p21.32	HLA, DRB1	rs615672-G	0.6531	1E-6	(EA)	0.0244	[0.014-0.034] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
615	chr6_mann_hap4	4024773	4024774	rs615672	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6p21.32	HLA, DRB1	rs615672-G	0.6427	1E-6		0.0235	[0.014-0.033] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
615	chr6_mann_hap4	4024773	4024774	rs615672	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.32	HLA-DRB1	rs615672-?	0.6531	2E-7	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
615	chr6_mann_hap4	4024773	4024774	rs615672	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.32	HLA-DRB1	rs615672-?	0.6427	1E-7				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
615	chr6_mann_hap4	4024773	4024774	rs615672	17554300	Wellcome Trust Case Control Consortium	2007-06-07	Nature	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Rheumatoid arthritis	1,860 European ancestry cases, 2,938 European ancestry controls	NA	6p21.32	HLA-DRB1	rs615672-?	NR	8E-27				Affymetrix [469557]	N
615	chr6_mann_hap4	4024960	4024961	rs2760995	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	6p21.32	NR	rs2760995-?	NR	6E-11				Affymetrix [~ 8270000] (imputed)	N
615	chr6_mann_hap4	4024960	4024961	rs2760995	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals, 6,795 African American individuals, 6,324 East Asian ancestry individuals, 2,335 South Asian ancestry individuals, 1,442 Hispanic individuals	NA	6p21.32	HLA-DRB	rs2760995-A	NR	4E-8		0.014	[0.0091-0.0189] unit decrease	Affymetrix, Illumina [8034757] (imputed)	N
615	chr6_mann_hap4	4024960	4024961	rs2760995	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Microalbuminuria	51,861 European, African American, East Asian, South Asian or Hispanic ancestry cases, 297,093 European, African American, East Asian, South Asian or Hispanic ancestry controls	NA	6p21.32	HLA-DRB	rs2760995-G	NR	3E-7		1.0445645	[1.03-1.06]	Affymetrix, Illumina [8326000] (imputed)	N
615	chr6_mann_hap4	4024962	4024963	rs2647074	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (anti-inflammatory and antirheumatic products, non-steroids)	74,150 European ancestry cases, 90,370 European ancestry controls, 29,694 East Asian ancestry cases, 149,032 East Asian ancestry controls	NA	6p21.32		rs2647074-T	NR	3E-12		0.0772	[0.056-0.099] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
615	chr6_mann_hap4	4024962	4024963	rs2647074	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DRB1	rs2647074-T	NR	1E-8		0.0186096	[0.012-0.025] unit decrease	Affymetrix [323123] (imputed)	N
615	chr6_mann_hap4	4024962	4024963	rs2647074	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Aspartate aminotransferase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	6p21.32	HLA-DRB1, HLA-DQA1	rs2647074-?		1E-13		0.0387	[0.029-0.049] unit decrease	Illumina [31500000] (imputed)	N
615	chr6_mann_hap4	4024962	4024963	rs2647074	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs2647074-T	0.328	1E-34	(Complement C4, C4A.C4B.4481.34.2)	0.32	[0.26-0.38] unit increase	Affymetrix [10572788] (imputed)	N
615	chr6_mann_hap4	4024962	4024963	rs2647074	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Total bilirubin levels	110,207 Japanese ancestry individuals	NA	6p21.32	HLA-DRB1, HLA-DQA1	rs2647074-?	NR	3E-10		0.03828	[0.026-0.05] unit increase novel	Illumina [6108953] (imputed)	N
615	chr6_mann_hap4	4025160	4025161	rs539705259	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on CD33dim HLA DR+ CD11b+	1,634 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs539705259-G	0.03706	4E-12		0.8225	[0.59-1.05] unit increase	Illumina [16998734] (imputed)	N
615	chr6_mann_hap4	4025198	4025199	rs113315602	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	6p21.32	HLA-DRB1	rs113315602-A	0.9027	9E-12		0.003	[0.002-0.004] unit increase	Affymetrix [15275733] (imputed)	N
615	chr6_mann_hap4	4025488	4025489	rs7760841	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	6p21.32	HLA-DQA1, HLA-DQB1, HLA-DRA, HLA-DRB1, HLA-DRB5, HLA-DRB6	rs7760841-T	0.176847	1E-12		1.1059403	[1.08-1.13]	Affymetrix [8274727] (imputed)	N
615	chr6_mann_hap4	4025576	4025577	rs145945003	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Yeast infection	52,218 European ancestry cases, 10,235 European ancestry controls	NA	6p21.32	NR	rs145945003-?	NR	1E-7		0.0858	[0.054-0.117] unit decrease	Illumina [at least 560000] (imputed)	N
615	chr6_mann_hap4	4025610	4025611	rs9271025	34532061	Hodel F	2021-06-11	Virus Evol	Human genomics of the humoral immune response against polyomaviruses.	Anti-JC polyomavirus IgG seropositivity	8,567 European ancestry antibody-positive cases cases, up to 6,836 European ancestry antibody-negative controls	NA	6p21.32		rs9271025-?	NR	4E-46				Affymetrix [NR] (imputed)	N
615	chr6_mann_hap4	4025719	4025720	rs7761182	27864402	Harris SE	2017-06-01	Int J Epidemiol	Molecular genetic contributions to self-rated health.	Self-rated health	111,749 British ancestry individuals	NA	6p21.32	HLA	rs7761182-?	NR	2E-9		0.03	[NR] unit increase	Affymetrix [~ 17300000] (imputed)	N
615	chr6_mann_hap4	4025831	4025832	rs13193738	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Strep throat	52,487 European ancestry cases, 22,017 European ancestry controls	NA	6p21.32	NR	rs13193738-?	NR	1E-7		0.0467	[0.029-0.064] unit increase	Illumina [at least 560000] (imputed)	N
615	chr6_mann_hap4	4026046	4026047	rs113742050	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DRB1	rs113742050-T	NR	4E-12		0.0348298	[0.025-0.045] unit increase	Affymetrix [319769] (imputed)	N
615	chr6_mann_hap4	4026046	4026047	rs113742050	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DRB1	rs113742050-T	NR	2E-12		0.0353099	[0.025-0.045] unit increase	Affymetrix [319769] (imputed)	N
615	chr6_mann_hap4	4026127	4026128	rs9271060	26891255	Jung ES	2016-02-18	Inflamm Bowel Dis	HLA-C*01 is a Risk Factor for Crohn's Disease.	Crohn's disease	275 Korean ancestry cases, 2,369 Korean ancestry controls	242 Korean ancestry cases, 1,066 Korean ancestry controls	6p21.32	HLA-DQA1, HLA-DRB1	rs9271060-G	0.77	1E-22		2.857143	[2.33-3.57]	Affymetrix [3387207] (imputed)	N
615	chr6_mann_hap4	4026138	4026139	rs4713555	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs4713555-?	NR	7E-13				Affymetrix [~ 8270000] (imputed)	N
615	chr6_mann_hap4	4026138	4026139	rs4713555	26482879	Paternoster L	2015-10-19	Nat Genet	Multi-ancestry genome-wide association study of 21,000 cases and 95,000 controls identifies new risk loci for atopic dermatitis.	Atopic dermatitis	18,900 European ancestry cases, 1,472 Japanese ancestry cases, 422 African American cases, 300 Latino cases, 305 cases, 84,166 European ancestry controls, 7,966 Japanese ancestry controls, 844 African American controls, 1,592 Latino controls, 896 controls	30,588 European ancestry cases, 459 African American cases, 1,012 Chinese ancestry cases, 226,537 European ancestry controls, 729 African American controls, 1,362 Chinese ancestry controls	6p21.32	HLA-DRB1, HLA-DQA1	rs4713555-G	0.73	5E-9	(EA, fixed effects)	1.098901		Illumina [15539996] (imputed)	N
615	chr6_mann_hap4	4026245	4026246	rs9271066	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	683 Turkish ancestry cases, 1,721 Turkish ancestry controls	NA	6p21.32	HLA-DRB1	rs9271066-?	NR	2E-11	(conditional on rs2844678, rs9262437, rs61444472 and rs17193507)			Illumina [4495750] (imputed)	N
615	chr6_mann_hap4	4026272	4026273	rs3021304	25108386	Hou S	2014-08-10	Nat Genet	Genome-wide association analysis of Vogt-Koyanagi-Harada syndrome identifies two new susceptibility loci at 1p31.2 and 10q21.3.	Vogt-Koyanagi-Harada syndrome	774 Han Chinese ancestry cases, 2,009 Han Chinese ancestry controls	764 Han Chinese ancestry cases, 3594 Han Chinese ancestry controls	6p21.32	HLA-DRB1, HLA-DQA1	rs3021304-G	0.346	1E-118		2.97	[2.71-3.26]	Affymetrix, Illumina [2208258] (imputed)	N
615	chr6_mann_hap4	4026349	4026350	rs9461776	25030430	Zignego AL	2014-07-17	Genes Immun	Genome-wide association study of hepatitis C virus- and cryoglobulin-related vasculitis.	Mixed cryoglobulinemia vasculitis in chronic hepatitis C infection	356 European ancestry cases, 447 European ancestry controls	92 European ancestry cases, 179 European ancestry controls	6p21.32	HLA-DQA1, HLA-DRB1	rs9461776-G	0.29	7E-9		2.02	[NR]	Illumina [899641]	N
615	chr6_mann_hap4	4026597	4026598	rs12660719	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs12660719-A	0.961474	2E-15		0.0823824	[0.062-0.103] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4026700	4026701	rs9271082	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	IgA nephropathy	1,180 East Asian ancestry cases, 899 East Asian ancestry controls	NA			rs9271082-C	NR	8E-9		0.466252	[0.31-0.62] unit increase	Illumina [NR] (imputed)	N
615	chr6_mann_hap4	4027090	4027091	rs9271100	25642632	Liu H	2015-02-02	Nat Genet	Discovery of six new susceptibility loci and analysis of pleiotropic effects in leprosy.	Leprosy	1,548 Chinese ancestry cases, 2,150 Chinese ancestry controls, 4,362 Chinese ancestry controls with immune-related diseases	6,765 Chinese ancestry cases, 9,505 Chinese ancestry controls	6p21.32	HLA-DR-DQ	rs9271100-T	0.217	8E-95		1.68	[NR]	Illumina [4577171] (imputed)	N
615	chr6_mann_hap4	4027090	4027091	rs9271100	19838193	Han JW	2009-10-18	Nat Genet	Genome-wide association study in a Chinese Han population identifies nine new susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	1,047 Han Chinese ancestry cases, 1,205 Han Chinese ancestry controls	3,152 Han Chinese ancestry cases, 7,050 Han Chinese ancestry controls	6p21.32	HLA-DRB1	rs9271100-?	NR	1E-12		1.9	[1.59-2.27]	Illumina [493955]	N
615	chr6_mann_hap4	4027407	4027408	rs9271117	24204295	Han F	2013-10-31	PLoS Genet	Genome wide analysis of narcolepsy in China implicates novel immune loci and reveals changes in association prior to versus after the 2009 H1N1 influenza pandemic.	Narcolepsy (onset before 2009 H1N1 influenza pandemic)	up to 893 Chinese ancestry cases with onset before the 2009 H1N1 influenza pandemic, up to 373 Chinese ancestry cases with onset after the 2009 H1N1 influenza pandemic	NA	6p21.32	NR	rs9271117-?	NR	6E-14		1.75	[NR]	Affymetrix [603382]	N
615	chr6_mann_hap4	4027990	4027991	rs660895	33517400	Ahluwalia TS	2021-01-30	Hum Mol Genet	Genome-Wide Association Study of Circulating Interleukin 6 Levels Identifies Novel Loci.	Interleukin-6 levels	52,654 European ancestry individuals	14,774 European ancestry individuals	6p21.32	HLADRB1, HLADQA1	rs660895-G	0.186447	2E-10		0.035794	[0.024-0.047] unit increase	Affymetrix, Illumina, Perlegen [2454025] (imputed)	N
615	chr6_mann_hap4	4027990	4027991	rs660895	32912934	Li M	2020-09-10	J Am Soc Nephrol	Genome-Wide Meta-Analysis Identifies Three Novel Susceptibility Loci and Reveals Ethnic Heterogeneity of Genetic Susceptibility for IgA Nephropathy.	IgA nephropathy	2,628 Chinese ancestry cases, 11,563 Chinese ancestry controls	6,879 Han Chinese ancestry cases, 9,019 Han Chinese ancestry controls, 1,039 Italian ancestry cases, 1,289 Italian ancestry controls	6p21.32	DQB1.DRB1	rs660895-G	0.2533255867854363	1E-14	(East Asian)	1.3539767	[1.25335647918749-1.46267487262285]	NR [3611808] (imputed)	N
615	chr6_mann_hap4	4027990	4027991	rs660895	26028593	Li M	2015-06-01	Nat Commun	Identification of new susceptibility loci for IgA nephropathy in Han Chinese.	IgA nephropathy	1,434 Han Chinese ancestry cases, 10,661 Han Chinese ancestry controls	6,879 Han Chinese ancestry cases, 9,019 Han Chinese ancestry controls	6p21.32	NR	rs660895-G	0.259	1E-10		1.289	[1.184-1.402]	Illumina [3792949] (imputed)	N
615	chr6_mann_hap4	4027990	4027991	rs660895	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis (ACPA-positive)	up to 9,585 European ancestry cases, up to 33,742 European ancestry controls	NA	6p21.32	HLA	rs660895-G	NR	1E-300		3.0299		Illumina [129464] (imputed)	N
615	chr6_mann_hap4	4027990	4027991	rs660895	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis (ACPA-negative)	3,297 European ancestry cases, 15,870 European ancestry controls	NA	6p21.32	HLA	rs660895-G	NR	2E-8		1.2083		Illumina [129464]	N
615	chr6_mann_hap4	4027990	4027991	rs660895	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis	up to 13,838 European ancestry cases, up to 33,742 European ancestry controls	NA	6p21.32	HLA	rs660895-G	NR	1E-300		2.265		Illumina [129464] (imputed)	N
615	chr6_mann_hap4	4027990	4027991	rs660895	22197929	Yu XQ	2011-12-25	Nat Genet	A genome-wide association study in Han Chinese identifies multiple susceptibility loci for IgA nephropathy.	IgA nephropathy	1,434 Han Chinese ancestry cases, 4,270 Han Chinese ancestry controls	2,703 Han Chinese ancestry cases, 3,464 Han Chinese ancestry controls	6p21.32	HLA-DRB1	rs660895-G	0.24	4E-20		1.34	[1.26-1.42]	Illumina [444882]	N
615	chr6_mann_hap4	4027990	4027991	rs660895	17804836	Plenge RM	2007-09-05	N Engl J Med	TRAF1-C5 as a risk locus for rheumatoid arthritis--a genomewide study.	Rheumatoid arthritis	1,522 European ancestry cases, 1,850 European ancestry controls	1,053 European ancestry cases, 1,858 European ancestry controls	6p21.32	HLA-DRB1	rs660895-?	0.21	1E-108		3.62	[NR]	Illumina [297086]	N
615	chr6_mann_hap4	4027997	4027998	rs36022506	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.32	Intergenic	rs36022506-?		2E-6		1.06	[1.03-1.08]	Illumina [7645193] (imputed)	N
615	chr6_mann_hap4	4028243	4028244	rs535777	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)(bidirectional)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs535777-G	NR	4E-12				Affymetrix [7846216] (imputed)	N
615	chr6_mann_hap4	4028243	4028244	rs535777	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Help-seeking from a psychiatrist	36,286 British ancestry cases, 297,126 British ancestry controls	NA	6p21.32	NR	rs535777-G	0.862	1E-9		1.0752687	NR	NR [5276842] (imputed)	N
615	chr6_mann_hap4	4028243	4028244	rs535777	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Help-seeking from a GP	113,262 British ancestry cases, 219,360 British ancestry controls	NA	6p21.32	NR	rs535777-?	NR	5E-6		1.0362694	[1.02-1.05]	NR [5276842] (imputed)	N
615	chr6_mann_hap4	4028498	4028499	rs9271170	31766143	Ortega-Azorin C	2019-11-13	Nutrients	Candidate Gene and Genome-Wide Association Studies for Circulating Leptin Levels Reveal Population and Sex-Specific Associations in High Cardiovascular Risk Mediterranean Subjects.	Circulating leptin levels in high cardiovascular risk	351 Spanish mediterranean ancestry men, 615 Spanish mediterranean ancestry women	NA	6p21.32	intergenic	rs9271170-?	0.24	8E-6	(model 2)	0.161	NR unit increase	Illumina [628376]	N
615	chr6_mann_hap4	4028691	4028692	rs674313	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	6p21.32	NR	rs674313-?	NR	2E-10	(MIC-A)	0.503744	[0.35-0.66] unit increase	Illumina [11901634] (imputed)	N
615	chr6_mann_hap4	4028691	4028692	rs674313	21131588	Slager SL	2010-12-03	Blood	Genome-wide association study identifies a novel susceptibility locus at 6p21.3 among familial CLL.	Chronic lymphocytic leukemia	407 European ancestry cases, 296 European ancestry controls	252 European ancestry cases, 965 European ancestry controls	6p21.32	HLA-DRB5	rs674313-T	0.26	7E-9		1.69	[1.41-2.01]	Affymetrix [827777]	N
615	chr6_mann_hap4	4028736	4028737	rs9271176	28165464	Law PJ	2017-02-06	Nat Commun	Genome-wide association analysis implicates dysregulation of immunity genes in chronic lymphocytic leukaemia.	Chronic lymphocytic leukemia	4,478 European ancestry cases and 13,213 European ancestry controls.	1,722 European ancestry cases and 4,385 European ancestry controls.	6p21.32	HLA	rs9271176-G	NR	3E-20		1.29	[1.22-1.36]	Affymetrix, Illumina [> 10000000] (imputed)	N
615	chr6_mann_hap4	4028887	4028888	rs2858863	31235810	Fung K	2019-06-24	Sci Rep	Genome-wide association study identifies loci for arterial stiffness index in 127,121 UK Biobank participants.	Arterial stiffness index	127,121 European ancestry individuals	NA	6p21.32	HLA-DRB1	rs2858863-C	0.796	5E-6		0.023	[0.013-0.033] unit increase	Affymetrix [~ 10446505] (imputed)	N
615	chr6_mann_hap4	4029139	4029140	rs9271192	31473137	Moreno-Grau S	2019-08-13	Alzheimers Dement	Genome-wide association analysis of dementia and its clinical endophenotypes reveal novel loci associated with Alzheimer's disease and three causality networks: The GR@ACE project.	Alzheimer's disease	4,120 Spanish ancestry cases, 17,008 cases, 3,289 Spanish ancestry controls, 37,154 controls	1,943 Spanish ancestry cases, 8,572 cases, 3,016 Spanish ancestry controls, 11,312 controls	6p21.32	HLA-DRB5	rs9271192-?	NR	5E-7		1.09	[1.13-1.05]	Affymetrix [up to 7055881] (imputed)	N
615	chr6_mann_hap4	4029139	4029140	rs9271192	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	6p21.32	HLA-DRB5, HLA-DRB1	rs9271192-C	0.2751	4E-8		5.49	NR z-unit increase	Affymetrix, Illumina [up to 10847151] (imputed)	N
615	chr6_mann_hap4	4029139	4029140	rs9271192	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease (late onset)	24,087 European ancestry cases, 55,058 European ancestry controls	NA	6p21.32	HLA-DRB5, HLA-DRB1	rs9271192-C	NR	5E-7		5.02	NR z-score increase	Illumina [up to 9862738] (imputed)	N
615	chr6_mann_hap4	4029139	4029140	rs9271192	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	6p21.32	NR	rs9271192-?	NR	7E-10		1.0530598		Affymetrix [7795605] (imputed)	N
615	chr6_mann_hap4	4029139	4029140	rs9271192	24162737	Lambert JC	2013-10-27	Nat Genet	Meta-analysis of 74,046 individuals identifies 11 new susceptibility loci for Alzheimer's disease.	Alzheimer's disease (late onset)	17,008 European ancestry cases, 37,154 European ancestry controls	8,572 European ancestry cases, 11,312 European ancestry controls	6p21.32	HLA-DRB5, HLA-DRB1	rs9271192-C	0.276	3E-12		1.11	[1.08-1.18]	Illumina [7055881] (imputed)	N
615	chr6_mann_hap4	4029199	4029200	rs3997868	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.32	NR	rs3997868-?	NR	1E-13				Affymetrix [~ 8270000] (imputed)	N
615	chr6_mann_hap4	4029242	4029243	rs5021727	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs5021727-A	0.540791	2E-9		0.0240273	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4029242	4029243	rs5021727	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs5021727-A	0.540791	4E-8		0.0219961	[0.014-0.03] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4029242	4029243	rs5021727	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs5021727-A	0.540791	1E-8		0.0228075	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4029242	4029243	rs5021727	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	6p21.32		rs5021727-?	NR	3E-9		0.00542275	[0.0036-0.0072] unit decrease	NR [NR]	N
615	chr6_mann_hap4	4029242	4029243	rs5021727	31589552	Lind L	2019-10-07	Metab Syndr Relat Disord	Genome-Wide Association Study of the Metabolic Syndrome in UK Biobank.	Metabolic syndrome	291,107 European ancestry individuals	NA	6p21.32	HLA-DRB1	rs5021727-G	0.461566	2E-8		0.0371336	[0.024-0.05] unit increase	Affymetrix [9463307] (imputed)	N
615	chr6_mann_hap4	4029644	4029645	rs9271209	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	6p21.32	NR	rs9271209-?	NR	2E-85	(EA)			Affymetrix, Illumina [~ 9000000] (imputed)	N
615	chr6_mann_hap4	4030227	4030228	rs28752509	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs28752509-C	0.542361	3E-18		0.0343946	[0.027-0.042] unit increase	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4030227	4030228	rs28752509	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs28752509-C	0.542361	1E-17		0.0336941	[0.026-0.041] unit increase	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4030230	4030231	rs28752510	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs28752510-G	0.542559	5E-23		0.0388531	[0.031-0.047] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4030230	4030231	rs28752510	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6p21.32		rs28752510-G	0.542559	2E-17		0.033878	[0.026-0.042] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4030230	4030231	rs28752510	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	6p21.32		rs28752510-G	0.542559	5E-9		0.0230374	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4030230	4030231	rs28752510	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	6p21.32		rs28752510-G	0.542559	3E-13		0.0296091	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4030230	4030231	rs28752510	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	6p21.32		rs28752510-G	0.542559	3E-13		0.0294341	[0.022-0.037] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4030230	4030231	rs28752510	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	6p21.32		rs28752510-G	0.542559	4E-17		0.0335623	[0.026-0.041] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4030230	4030231	rs28752510	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs28752510-G	0.542559	4E-14		0.0312145	[0.023-0.039] unit increase	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4030230	4030231	rs28752510	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	6p21.32		rs28752510-G	0.542559	5E-10		0.0257222	[0.018-0.034] unit increase	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4030230	4030231	rs28752510	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs28752510-G	0.542559	1E-19		0.035402	[0.028-0.043] unit increase	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4030230	4030231	rs28752510	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	6p21.32		rs28752510-G	0.542559	2E-9		0.0240001	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4030230	4030231	rs28752510	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	6p21.32		rs28752510-G	0.542559	3E-14		0.030005	[0.022-0.038] unit increase	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4030230	4030231	rs28752510	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs28752510-G	0.542559	2E-20		0.0362502	[0.029-0.044] unit increase	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4030230	4030231	rs28752510	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	6p21.32		rs28752510-G	0.542559	2E-11		0.027339	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4030230	4030231	rs28752510	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	6p21.32		rs28752510-G	0.542559	2E-15		0.0309552	[0.023-0.039] unit increase	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4030275	4030276	rs13191975	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs13191975-T	NR	4E-12		0.0198638	[0.014-0.025] unit increase	Affymetrix [321169] (imputed)	N
615	chr6_mann_hap4	4031104	4031105	rs9368730	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	6p21.32	HLA-DRB1, HLA-DQA1	rs9368730-G	0.876	2E-8		1.403	[0.74-2.07] ml/min/1.73m2 decrease	Affymetrix, Illumina [at least 5248638] (imputed)	N
615	chr6_mann_hap4	4032105	4032106	rs9271296	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR++ monocyte %monocyte	3,595 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9271296-G	0.55558	4E-23		0.3033	[0.24-0.36] unit decrease	Illumina [18380843] (imputed)	N
615	chr6_mann_hap4	4032287	4032288	rs1966002	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs1966002-T	0.454	8E-31		1.337	[1.29-1.39]	Illumina [11270530] (imputed)	N
615	chr6_mann_hap4	4032343	4032345	rs776111176	30552067	Shrine N	2018-12-11	Lancet Respir Med	Moderate-to-severe asthma in individuals of European ancestry: a genome-wide association study.	Asthma (moderate or severe)	5,135 European ancestry cases, 25,675 European ancestry controls	5,414 European ancestry cases, 21,471 European ancestry controls	6p21.32	HLA-DQA1	rs776111176-A	0.1485	3E-16		1.1904762	[1.14-1.23]	Affymetrix [33771858] (imputed)	N
615	chr6_mann_hap4	4032493	4032494	rs4530903	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6p21.32		rs4530903-?	NR	9E-20		1.15592	[1.12-1.19]	NR [685523]	N
615	chr6_mann_hap4	4032493	4032494	rs4530903	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs4530903-T	0.19	2E-8		4.08	[3.13-5.32]	Illumina [NR] (imputed)	N
615	chr6_mann_hap4	4032493	4032494	rs4530903	23349640	Vijai J	2013-01-17	PLoS Genet	Susceptibility loci associated with specific and shared subtypes of lymphoid malignancies.	Lymphoma	275 Follicular non-Hodgkin's Lymphoma cases, 269 diffuse large B-cell non-Hodgkin's Lymphoma cases, 198 other non-Hodgkin's Lymphoma cases, 202 Hodgkin's Lymphoma cases, 4,044 controls	202 European ancestry Follicular non-Hodgkin's Lymphoma cases, 367 European ancestry diffuse large B-cell non-Hodgkin's Lymphoma cases, 577 European ancestry other non-Hodgkin's Lymphoma cases, 99 European ancestry Hodgkin's Lymphoma cases, 2,596 European ancestry controls	6p21.32	HLA-DRB5, HLA-DQA1	rs4530903-T	NR	3E-6	(LYM)	1.29	[1.16-1.43]	Affymetrix [530583]	N
615	chr6_mann_hap4	4032493	4032494	rs4530903	23349640	Vijai J	2013-01-17	PLoS Genet	Susceptibility loci associated with specific and shared subtypes of lymphoid malignancies.	Lymphoma	275 Follicular non-Hodgkin's Lymphoma cases, 269 diffuse large B-cell non-Hodgkin's Lymphoma cases, 198 other non-Hodgkin's Lymphoma cases, 202 Hodgkin's Lymphoma cases, 4,044 controls	202 European ancestry Follicular non-Hodgkin's Lymphoma cases, 367 European ancestry diffuse large B-cell non-Hodgkin's Lymphoma cases, 577 European ancestry other non-Hodgkin's Lymphoma cases, 99 European ancestry Hodgkin's Lymphoma cases, 2,596 European ancestry controls	6p21.32	HLA-DRB5, HLA-DQA1	rs4530903-T	NR	3E-12	(FL)	1.93	[NR]	Affymetrix [530583]	N
615	chr6_mann_hap4	4032493	4032494	rs4530903	23349640	Vijai J	2013-01-17	PLoS Genet	Susceptibility loci associated with specific and shared subtypes of lymphoid malignancies.	Lymphoma	275 Follicular non-Hodgkin's Lymphoma cases, 269 diffuse large B-cell non-Hodgkin's Lymphoma cases, 198 other non-Hodgkin's Lymphoma cases, 202 Hodgkin's Lymphoma cases, 4,044 controls	202 European ancestry Follicular non-Hodgkin's Lymphoma cases, 367 European ancestry diffuse large B-cell non-Hodgkin's Lymphoma cases, 577 European ancestry other non-Hodgkin's Lymphoma cases, 99 European ancestry Hodgkin's Lymphoma cases, 2,596 European ancestry controls	6p21.32	HLA-DRB5, HLA-DQA1	rs4530903-T	NR	2E-8	(NHL)	1.37	[1.23-1.54]	Affymetrix [530583]	N
615	chr6_mann_hap4	4032493	4032494	rs4530903	23212062	Fanous AH	2012-12-01	Am J Psychiatry	Genome-wide association study of clinical dimensions of schizophrenia: polygenic effect on disorganized symptoms.	Schizophrenia	2,454 European ancestry cases	NA	6p21.32	HLA-DRB1, HLA-DQA1	rs4530903-?	NR	5E-6	(Negative/disorganized symptoms)	0.0919	[NR] unit increase	Affymetrix [696491]	N
615	chr6_mann_hap4	4032526	4032527	rs522308	29521573	Buck D	2018-03-01	Mult Scler	Effect of HLA-DRB1 alleles and genetic variants on the development of neutralizing antibodies to interferon beta in the BEYOND and BENEFIT trials.	Neutralising antibody response to interferon beta therapy in multiple sclerosis (presence of antibodies)	361 European, Hispanic, Asian, African or unknown ancestry cases, 580 European, Hispanic, Asian, African or unknown ancestry controls	NA	6p21.32	intergenic	rs522308-T	0.25	2E-15		2.6	[2.05-3.29]	Affymetrix [8671751] (imputed)	N
615	chr6_mann_hap4	4033085	4033086	rs9271324	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	Composite immunoglobulin trait (IgA x IgG x IgM)	14,183 Icelandic ancestry individuals	2,146 Swedish ancestry individuals	6p21.32	HLA-DQA1	rs9271324-G	0.2804	4E-19		0.11	NR SD units decrease	Illumina [21568490] (imputed)	N
615	chr6_mann_hap4	4033116	4033117	rs9271325	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	6p21.32		rs9271325-?	NR	2E-8		0.00512579	[0.0033-0.0069] unit increase	NR [NR]	N
615	chr6_mann_hap4	4033204	4033205	rs34656207	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	6p21.32		rs34656207-T	NR	1E-126		0.0477	[0.044-0.052] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
615	chr6_mann_hap4	4033204	4033205	rs34656207	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	6p21.32	HLA-DRB1, HLA-DQA1	rs34656207-T	0.36	1E-111		22.4	z-score increase	Affymetrix [4314223] (imputed)	N
615	chr6_mann_hap4	4033215	4033216	rs3104414	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DQA1	rs3104414-A	NR	9E-13		0.0232695	[0.017-0.03] unit decrease	Affymetrix [323123] (imputed)	N
615	chr6_mann_hap4	4033215	4033216	rs3104414	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR+ T cell%T cell	3,596 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs3104414-A	0.35131	9E-9		0.1693	[0.11-0.23] unit increase	Illumina [18380873] (imputed)	N
615	chr6_mann_hap4	4033215	4033216	rs3104414	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Chronic sinus infection	5,291 European ancestry cases, 79,622 European ancestry controls	NA	6p21.32	NR	rs3104414-?	NR	2E-6		0.104	[0.061-0.147] unit decrease	Illumina [at least 560000] (imputed)	N
615	chr6_mann_hap4	4033253	4033254	rs3104413	26272072	Jiang X	2015-08-13	Rheumatology (Oxford)	An Immunochip-based interaction study of contrasting interaction effects with smoking in ACPA-positive versus ACPA-negative rheumatoid arthritis.	ACPA-positive rheumatoid arthritis (smoking interaction)	340 European ancestry never-smoker cases, 493 European ancestry ever-smoker cases, 746 European ancestry never-smoker controls, 994 European ancestry ever-smoker controls	187 European ancestry never-smoker cases, 421 European ancestry ever-smoker cases, 461 European ancestry never-smoker controls, 447 European ancestry ever-smoker controls	6p21.32	NR	rs3104413-?	NR	2E-10	(adjusted for HLA shared epitope)	1.7857143	[1.35-2.56]	Illumina [133648] (imputed)	N
615	chr6_mann_hap4	4033253	4033254	rs3104413	25014791	Govind N	2014-08-14	Mol Med	Immunochip identifies novel, and replicates known, genetic risk loci for rheumatoid arthritis in black South Africans.	Rheumatoid arthritis	263 South African Black cases and 374 South African Black controls	NA	6p21.32	HLA-DRB1	rs3104413-?	NR	5E-21		3.88		Illumina [103770]	N
615	chr6_mann_hap4	4033500	4033501	rs117356394	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PRSS8	5,356 Icelandic ancestry individuals	NA	6p21.32		rs117356394-G	0.01954	5E-13		0.472302	[0.34-0.6] unit increase	Illumina [7506463] (imputed)	N
615	chr6_mann_hap4	4033500	4033501	rs117356394	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein BAGE3	5,360 Icelandic ancestry individuals	NA	6p21.32		rs117356394-G	0.01954	5E-13		0.48146	[0.35-0.61] unit increase	Illumina [7506463] (imputed)	N
615	chr6_mann_hap4	4033608	4033609	rs6917212	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on CD33dim HLA DR+ CD11b-	1,635 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs6917212-G	0.76363	2E-23		0.4456	[0.36-0.53] unit decrease	Illumina [16999305] (imputed)	N
615	chr6_mann_hap4	4033608	4033609	rs6917212	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on CD33dim HLA DR+ CD11b+	1,634 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs6917212-G	0.23621	2E-26		0.4813	[0.39-0.57] unit decrease	Illumina [16998734] (imputed)	N
615	chr6_mann_hap4	4033608	4033609	rs6917212	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on CD14- CD16+ monocyte	3,621 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs6917212-G	0.77661	1E-48		0.476	[0.41-0.54] unit decrease	Illumina [18212658] (imputed)	N
615	chr6_mann_hap4	4033608	4033609	rs6917212	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on CD14+ CD16+ monocyte	3,618 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs6917212-G	0.77656	4E-58		0.5221	[0.46-0.58] unit decrease	Illumina [18213821] (imputed)	N
615	chr6_mann_hap4	4033649	4033650	rs3129754	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs3129754-G	NR	8E-13		0.020445	[0.015-0.026] unit increase	Affymetrix [319769] (imputed)	N
615	chr6_mann_hap4	4033649	4033650	rs3129754	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs3129754-G	NR	2E-12		0.0200088	[0.014-0.026] unit increase	Affymetrix [319769] (imputed)	N
615	chr6_mann_hap4	4033660	4033661	rs3129755	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs3129755-A	0.434675	3E-21		0.0380258	[0.03-0.046] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4033660	4033661	rs3129755	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	6p21.32		rs3129755-A	0.434675	1E-20		0.037327	[0.029-0.045] unit increase	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4033660	4033661	rs3129755	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	6p21.32		rs3129755-A	0.434675	2E-23		0.0397462	[0.032-0.048] unit increase	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4033762	4033763	rs4959106	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Interleukin-6 levels	21,758 European ancestry individuals	9,173 individuals	6p21.32		rs4959106-T	0.54	7E-13		0.0741	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
615	chr6_mann_hap4	4033877	4033878	rs13208697	34785669	Grosche S	2021-11-16	Nat Commun	Rare variant analysis in eczema identifies exonic variants in DUSP1, NOTCH4 and SLC9A4.	Eczema	20,016 European ancestry cases, 380,433 European ancestry controls	NA	6p21.32		rs13208697-T	0.1461	7E-18		0.86		Affymetrix, Illumina [9397031] (imputed)	N
615	chr6_mann_hap4	4033960	4033961	rs6931277	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Family history of Alzheimer's disease	47,793 European ancestry cases, 328,320 European ancestry controls	NA	6p21.32	HLA-DRB1	rs6931277-T	NR	2E-7		5.22	NR z-score decrease	Affymetrix [10847151] (imputed)	N
615	chr6_mann_hap4	4033960	4033961	rs6931277	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	6p21.32	HLA-DRB1	rs6931277-T	0.153	8E-11		6.49	NR z-unit decrease	Affymetrix, Illumina [up to 10847151] (imputed)	N
615	chr6_mann_hap4	4033960	4033961	rs6931277	26272072	Jiang X	2015-08-13	Rheumatology (Oxford)	An Immunochip-based interaction study of contrasting interaction effects with smoking in ACPA-positive versus ACPA-negative rheumatoid arthritis.	ACPA-positive rheumatoid arthritis (smoking interaction)	340 European ancestry never-smoker cases, 493 European ancestry ever-smoker cases, 746 European ancestry never-smoker controls, 994 European ancestry ever-smoker controls	187 European ancestry never-smoker cases, 421 European ancestry ever-smoker cases, 461 European ancestry never-smoker controls, 447 European ancestry ever-smoker controls	6p21.32	NR	rs6931277-?	NR	2E-10	(adjusted for HLA shared epitope)	1.7857143	[1.35-2.56]	Illumina [133648] (imputed)	N
615	chr6_mann_hap4	4034004	4034005	rs7760731	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p21.32	HLA-DQA1	rs7760731-C	0.642	6E-11		0.087	[0.062-0.112] unit increase	Affymetrix, Illumina [7374092] (imputed)	N
615	chr6_mann_hap4	4034080	4034081	rs28383223	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	6p21.32	HLA-DRB1, HLA-DQA1	rs28383223-T	0.58	7E-38		12.9	z-score increase	Affymetrix [4312306] (imputed)	N
615	chr6_mann_hap4	4034107	4034108	rs114991247	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Growth-regulated protein alpha levels	3,505 Finnish ancestry individuals	NA	6p21.32	NR	rs114991247-C		8E-6		0.2092	[0.12-0.3] SD units increase	NR [10700000] (imputed)	N
615	chr6_mann_hap4	4034256	4034257	rs28383224	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs28383224-A	NR	4E-20		0.0262329	[0.021-0.032] unit decrease	Affymetrix [319769] (imputed)	N
615	chr6_mann_hap4	4034256	4034257	rs28383224	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs28383224-A	NR	1E-19		0.0258764	[0.02-0.031] unit decrease	Affymetrix [319769] (imputed)	N
615	chr6_mann_hap4	4034256	4034257	rs28383224	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs28383224-A	NR	9E-10		0.0176752	[0.012-0.023] unit decrease	Affymetrix [321114] (imputed)	N
615	chr6_mann_hap4	4034256	4034257	rs28383224	29769526	Estrada K	2018-05-16	Nat Commun	A whole-genome sequence study identifies genetic risk factors for neuromyelitis optica.	Neuromyelitis optica (AQP4-IgG-positive)	66 European ancestry cases, 784 European ancestry controls	66 European ancestry cases, 460 European ancestry controls	6p21.32	HLA-DQA1	rs28383224-A	0.42	8E-11		2.66	[1.98-3.56]	Affymetrix [6804788] (imputed)	N
615	chr6_mann_hap4	4034256	4034257	rs28383224	29769526	Estrada K	2018-05-16	Nat Commun	A whole-genome sequence study identifies genetic risk factors for neuromyelitis optica.	Neuromyelitis optica	66 European ancestry AQP4-IgG antibody seropositive cases, 63 European ancestry AQP4-IgG antibody seronegative cases, 784 European ancestry controls	66 European ancestry AQP4-IgG antibody seropositive cases, 20 European ancestry AQP4-IgG antibody seronegative cases, 460 European ancestry controls	6p21.32	HLA-DQA1	rs28383224-A	0.42	6E-12		2.24	[1.78-2.82]	Affymetrix [6804788] (imputed)	N
615	chr6_mann_hap4	4034345	4034346	rs9271348	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein KCNE2	5,364 Icelandic ancestry individuals	NA	6p21.32		rs9271348-G	0.3219	7E-13		0.143439	[0.1-0.18] unit decrease	Illumina [7506463] (imputed)	N
615	chr6_mann_hap4	4034345	4034346	rs9271348	24532677	Bossini-Castillo L	2014-02-14	Ann Rheum Dis	A genome-wide association study of rheumatoid arthritis without antibodies against citrullinated peptides.	Rheumatoid arthritis (ACPA-negative)	1,148 European ancestry cases, 6,008 European ancestry controls	774 European ancestry cases, 1,079 European ancestry controls	6p21.32	HLA-DRB1, HLA-DQA1	rs9271348-?		5E-7		1.2821	[NR]	Illumina [452367]	N
615	chr6_mann_hap4	4034416	4034417	rs1846190	34493870	Wightman DP	2021-09-07	Nat Genet	A genome-wide association study with 1,126,563 individuals identifies new risk loci for Alzheimer's disease.	Late-onset Alzheimer's disease	90,338 cases, 1,036,225 controls	NA	6p21.32		rs1846190-?	NR	3E-14				Illumina [NR] (imputed)	N
615	chr6_mann_hap4	4034433	4034434	rs9271349	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs9271349-A	NR	4E-9		0.0217606	[0.015-0.029] unit decrease	Affymetrix [321169] (imputed)	N
615	chr6_mann_hap4	4034483	4034484	rs112430285	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	6p21.32	NR	rs112430285-?	NR	8E-12				Affymetrix [~ 8270000] (imputed)	N
615	chr6_mann_hap4	4034586	4034587	rs33915496	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	89,266 East Asian ancestry individuals	NA	6p21.32	NR	rs33915496-A	0.543315	1E-16		0.039594	[0.03-0.049] SD units increase	Affymetrix, Illumina [16289068] (imputed)	N
615	chr6_mann_hap4	4034600	4034601	rs28383228	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs28383228-A	0.135	4E-18	(Interleukin-21, IL21.7124.18.3)	0.34	[0.26-0.42] unit increase	Affymetrix [10572788] (imputed)	N
615	chr6_mann_hap4	4034600	4034601	rs28383228	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs28383228-A	0.135	3E-35	(Ubiquitin carboxyl-terminal hydrolase 25, USP25.9215.117.3)	0.48	[0.4-0.56] unit increase	Affymetrix [10572788] (imputed)	N
615	chr6_mann_hap4	4034600	4034601	rs28383228	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs28383228-A	0.135	2E-16	(MHC class I polypeptide-related sequence B, MICB.5102.55.3)	0.32	[0.24-0.4] unit increase	Affymetrix [10572788] (imputed)	N
615	chr6_mann_hap4	4034760	4034761	rs28383233	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	6p21.32		rs28383233-G	0.418462	4E-14		0.029595	[0.022-0.037] unit increase	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4034798	4034799	rs34077986	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs34077986-C	NR	5E-11		0.0189538	[0.013-0.025] unit increase	Affymetrix [321169] (imputed)	N
615	chr6_mann_hap4	4034919	4034920	rs33932178	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	95,717 East Asian ancestry individuals	NA	6p21.32		rs33932178-G	0.449956	3E-22		0.0431265	[0.034-0.052] unit decrease	Illumina [13471431] (imputed)	N
615	chr6_mann_hap4	4034925	4034926	rs28383241	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	6p21.32		rs28383241-A	NR	9E-40		0.0249	[0.021-0.029] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
615	chr6_mann_hap4	4034976	4034977	rs34694416	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Basal cell carcinoma	31,787 European ancestry cases, 619,351 European ancestry controls	NA	6p21.32	HLA-DQA1	rs34694416-T	0.116415	8E-23		1.14	[1.11-1.16]	Affymetrix, Illumina [up to 9061544] (imputed)	N
615	chr6_mann_hap4	4035184	4035185	rs73730372	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR++ monocyte %monocyte	3,595 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs73730372-T	0.20013	2E-10		0.2818	[0.2-0.37] unit decrease	Illumina [18380843] (imputed)	N
615	chr6_mann_hap4	4035184	4035185	rs73730372	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs73730372-?	NR	9E-26				Affymetrix [~ 8270000] (imputed)	N
615	chr6_mann_hap4	4035184	4035185	rs73730372	27285765	Chen D	2016-06-07	Oncotarget	Pooled analysis of genome-wide association studies of cervical intraepithelial neoplasia 3 (CIN3) identifies a new susceptibility locus.	Cervical cancer	1,553 Swedish ancestry cervical intraepithelial neoplasia grade 3 cases, 81 Swedish ancestry cervical cancer cases,  4,442 Swedish ancestry controls	827 Swedish ancestry cervical intraepithelial neoplasia grade 3 cases, 123 Swedish ancestry cervical cancer cases, 1,715 European ancestry controls	6p21.32	intergenic	rs73730372-?		3E-19		1.67	[1.49-1.85]	Illumina [5471179]	N
615	chr6_mann_hap4	4035212	4035213	rs3129757	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Cathepsin L1 levels	21,758 European ancestry individuals	9,173 individuals	6p21.32		rs3129757-A	0.15	9E-17		0.0997	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
615	chr6_mann_hap4	4035342	4035343	rs28752520	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs28752520-C	0.227	4E-23	(Complement C4, C4A.C4B.4481.34.2)	0.31	[0.25-0.37] unit increase	Affymetrix [10572788] (imputed)	N
615	chr6_mann_hap4	4035375	4035376	rs28752523	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	6p21.32		rs28752523-C	0.806174	2E-12		0.0353026	[0.025-0.045] unit increase	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4035375	4035376	rs28752523	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to omega-3 fatty acids	115,006 European ancestry individuals	NA	6p21.32		rs28752523-C	0.806174	4E-8		0.0275581	[0.018-0.037] unit increase	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4035375	4035376	rs28752523	33204752	Butler-Laporte G	2020-09-24	Open Forum Infect Dis	Genetic Determinants of Antibody-Mediated Immune Responses to Infectious Diseases Agents: A Genome-Wide and HLA Association Study.	Human herpes virus 6 IE1A antibody levels	6,968 White British ancestry individuals	NA	6p21.32	HLA-DQA1	rs28752523-C	0.806	8E-9		0.12	[0.079-0.161] unit decrease	NR [25472218] (imputed)	N
615	chr6_mann_hap4	4035483	4035484	rs73730377	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FAS	5,367 Icelandic ancestry individuals	NA	6p21.32		rs73730377-G	0.179	9E-13		0.172154	[0.12-0.22] unit increase	Illumina [7506463] (imputed)	N
615	chr6_mann_hap4	4035483	4035484	rs73730377	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.32	NR	rs73730377-?	NR	2E-23				Affymetrix [~ 8270000] (imputed)	N
615	chr6_mann_hap4	4035675	4035676	rs28752534	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	6p21.32		rs28752534-T	0.699585	3E-10		0.0269354	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4035675	4035676	rs28752534	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	6p21.32		rs28752534-T	0.699588	5E-10		0.0255499	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4035675	4035676	rs28752534	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p21.32	HLA-DRB3	rs28752534-T	0.64	2E-30		1.11	[1.1-1.13] unit increase	Illumina [at least 560000] (imputed)	N
615	chr6_mann_hap4	4035893	4035894	rs28383254	29903748	Debiec H	2018-06-14	J Am Soc Nephrol	Transethnic, Genome-Wide Analysis Reveals Immune-Related Risk Alleles and Phenotypic Correlates in Pediatric Steroid-Sensitive Nephrotic Syndrome.	Childhood steroid-sensitive nephrotic syndrome	85 Maghrebian cases, 261 Maghrebian controls	NA	6p21.32	HLA-DRB1, HLA-DQA1	rs28383254-?	NR	3E-8		5.7	[3.1-10.6]	Illumina [at least 7529344] (imputed)	N
615	chr6_mann_hap4	4036157	4036158	rs28383264	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs28383264-T	0.201	1E-12	(Hepatocyte nuclear factor 4-alpha, HNF4A.10041.3.3)	0.24	[0.18-0.3] unit increase	Affymetrix [10572788] (imputed)	N
615	chr6_mann_hap4	4036220	4036221	rs3104412	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	6p21.32	NR	rs3104412-?	NR	1E-142	(conditional)			Affymetrix [15688218] (imputed)	N
615	chr6_mann_hap4	4036272	4036273	rs3135005	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	6p21.32	NR	rs3135005-?	NR	2E-9		5.995	NR z score decrease	Illumina [at least 830937] (imputed)	N
615	chr6_mann_hap4	4036413	4036414	rs70993900	30230522	Zhang S	2018-09-19	Br J Dermatol	Subtype-Specific Inherited Predisposition to Pemphigus in Chinese Population.	Pemphigus vulgaris	255 Chinese ancestry cases, 501 Chinese ancestry controls	110 Chinese ancestry cases, 604 Chinese ancestry controls	6p21.32	NR	rs70993900-?	0.09	1E-45		18.57	NR	Affymetrix [416397]	N
615	chr6_mann_hap4	4036413	4036414	rs70993900	30230522	Zhang S	2018-09-19	Br J Dermatol	Subtype-Specific Inherited Predisposition to Pemphigus in Chinese Population.	Pemphigus	350 Chinese ancestry cases, 501 Chinese ancestry controls	146 Chinese ancestry cases, 604 Chinese ancestry controls	6p21.32	NR	rs70993900-?	0.09	1E-43		10.92	NR	Affymetrix [416397]	N
615	chr6_mann_hap4	4036491	4036492	rs11751024	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	6p21.32		rs11751024-C	0.601399	2E-18		0.0366905	[0.028-0.045] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4036491	4036492	rs11751024	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	CAG-882 sp003486385 abundance in stool	5,959 Finnish ancestry individuals	NA	6p21.32		rs11751024-A	0.400705	5E-8		0.104999	[0.067-0.143] unit increase	Illumina [7980478] (imputed)	N
615	chr6_mann_hap4	4036491	4036492	rs11751024	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TGM3	5,368 Icelandic ancestry individuals	NA	6p21.32		rs11751024-A	0.3876	6E-13		0.141161	[0.1-0.18] unit decrease	Illumina [7506463] (imputed)	N
615	chr6_mann_hap4	4036491	4036492	rs11751024	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.32	NR	rs11751024-?	NR	5E-24				Affymetrix [~ 8270000] (imputed)	N
615	chr6_mann_hap4	4036491	4036492	rs11751024	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs11751024-?	NR	9E-35				Affymetrix [~ 8270000] (imputed)	N
615	chr6_mann_hap4	4036631	4036632	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	VLDL cholesterol levels	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	7E-27		0.0483058	[0.039-0.057] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4036631	4036632	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total phospholipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	3E-13		0.0313476	[0.023-0.04] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4036631	4036632	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small LDL	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	9E-20		0.0410279	[0.032-0.05] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4036631	4036632	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium VLDL	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	2E-27		0.0484871	[0.04-0.057] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4036631	4036632	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium LDL	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	8E-20		0.0412131	[0.032-0.05] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4036631	4036632	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	2E-19		0.0399601	[0.031-0.049] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4036631	4036632	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in LDL	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	9E-17		0.0374103	[0.029-0.046] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4036631	4036632	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total free cholesterol levels	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	8E-17		0.036746	[0.028-0.045] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4036631	4036632	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol minus HDL-C levels	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	4E-18		0.038935	[0.03-0.048] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4036631	4036632	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Polyunsaturated fatty acid levels	115,006 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665908	4E-22		0.0423547	[0.034-0.051] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4036631	4036632	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	2E-28		0.0496534	[0.041-0.058] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4036631	4036632	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small LDL	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	1E-16		0.0372035	[0.028-0.046] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4036631	4036632	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium VLDL	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	4E-27		0.0485352	[0.04-0.057] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4036631	4036632	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium LDL	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	2E-18		0.0396392	[0.031-0.048] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4036631	4036632	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-6 fatty acid levels	115,006 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665908	3E-21		0.0416405	[0.033-0.05] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4036631	4036632	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Linoleic acid levels	115,006 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665908	1E-22		0.0433006	[0.035-0.052] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4036631	4036632	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	9E-26		0.0473496	[0.039-0.056] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4036631	4036632	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	8E-26		0.0473724	[0.039-0.056] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4036631	4036632	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small LDL particles	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	2E-20		0.0419422	[0.033-0.051] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4036631	4036632	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium VLDL particles	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	4E-27		0.0485075	[0.04-0.057] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4036631	4036632	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium LDL particles	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	6E-19		0.0402296	[0.031-0.049] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4036631	4036632	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of VLDL particles	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	7E-27		0.0480395	[0.039-0.057] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4036631	4036632	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	8E-28		0.0491721	[0.04-0.058] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4036631	4036632	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small LDL	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	6E-22		0.043478	[0.035-0.052] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4036631	4036632	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium LDL	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	2E-21		0.0430313	[0.034-0.052] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4036631	4036632	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in LDL	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	6E-18		0.0389019	[0.03-0.048] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4036631	4036632	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	2E-27		0.0488991	[0.04-0.058] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4036631	4036632	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small LDL	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	6E-19		0.0401589	[0.031-0.049] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4036631	4036632	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	3E-19		0.0405703	[0.032-0.049] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4036637	4036638	rs61126090	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Terminally Differentiated CD4-CD8- T cell Absolute Count	3,395 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs61126090-G	0.19907	1E-12		0.2671	[0.19-0.34] unit decrease	Illumina [18332267] (imputed)	N
615	chr6_mann_hap4	4036639	4036640	rs28383283	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Terminally Differentiated CD4-CD8- T cell %T cell	3,427 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs28383283-T	0.2651	1E-9		0.2109	[0.14-0.28] unit decrease	Illumina [18349913] (imputed)	N
615	chr6_mann_hap4	4037010	4037011	rs28383307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large HDL	115,082 European ancestry individuals	NA	6p21.32		rs28383307-C	0.805689	2E-9		0.0282931	[0.019-0.037] unit increase	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4037010	4037011	rs28383307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large HDL	115,082 European ancestry individuals	NA	6p21.32		rs28383307-C	0.805689	3E-9		0.0277214	[0.019-0.037] unit increase	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4037010	4037011	rs28383307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	6p21.32		rs28383307-C	0.805689	8E-11		0.0304025	[0.021-0.04] unit increase	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4037010	4037011	rs28383307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	6p21.32		rs28383307-C	0.805689	6E-9		0.026858	[0.018-0.036] unit increase	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4037010	4037011	rs28383307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	6p21.32		rs28383307-C	0.805689	2E-11		0.0315135	[0.022-0.041] unit increase	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4037037	4037038	rs28383308	33768542	Liu Y	2021-03-26	Clin Pharmacol Ther	Class II HLA Variants Associate with Risk of Pegaspargase Hypersensitivity.	Asparaginase hypersensitivity in acute lymphoblastic leukemia	2,290 European ancestry individuals, 310 African ancestry individuals, 798 Native American individuals, 112 Asian ancestry individuals, 387 individuals	NA	6p21.32	HLA-DQA1	rs28383308-T	NR	5E-14		1.95	[NR]	Affymetrix, Illumina [NR] (imputed)	N
615	chr6_mann_hap4	4037049	4037050	rs9271365	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hypothyroidism	30,155 European ancestry cases, 379,986 European ancestry controls, 1,114 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	6p21.32		rs9271365-G	NR	5E-123		0.2484	[0.23-0.27] unit increase	Affymetrix, Illumina [25801083] (imputed)	N
615	chr6_mann_hap4	4037049	4037050	rs9271365	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hashimoto thyroiditis	15,654 European ancestry cases, 379,986 European ancestry controls, 537 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	6p21.32		rs9271365-G	NR	1E-39		0.2531	[0.22-0.29] unit increase	Affymetrix, Illumina [25797652] (imputed)	N
615	chr6_mann_hap4	4037049	4037050	rs9271365	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	6p21.32	NR	rs9271365-?	NR	7E-35				Affymetrix [~ 8270000] (imputed)	N
615	chr6_mann_hap4	4037086	4037087	rs13191810	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium VLDL	115,082 European ancestry individuals	NA	6p21.32		rs13191810-C	0.687691	5E-25		0.0445033	[0.036-0.053] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4037086	4037087	rs13191810	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs13191810-C	0.687691	2E-21		0.040583	[0.032-0.049] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4037086	4037087	rs13191810	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs13191810-C	0.687691	3E-22		0.0414982	[0.033-0.05] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4037086	4037087	rs13191810	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs13191810-C	0.687691	5E-24		0.0433674	[0.035-0.052] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4037086	4037087	rs13191810	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs13191810-C	0.687691	3E-16		0.0350026	[0.027-0.043] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4037086	4037087	rs13191810	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	6p21.32		rs13191810-C	0.687723	6E-17		0.0344759	[0.026-0.043] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4037086	4037087	rs13191810	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs13191810-C	0.687691	1E-22		0.0419227	[0.034-0.05] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4037086	4037087	rs13191810	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs13191810-C	0.687691	3E-24		0.0434772	[0.035-0.052] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4037086	4037087	rs13191810	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs13191810-C	0.687691	7E-17		0.0354956	[0.027-0.044] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4037086	4037087	rs13191810	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-3 fatty acid levels	115,006 European ancestry individuals	NA	6p21.32		rs13191810-C	0.687723	5E-14		0.0321812	[0.024-0.041] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4037086	4037087	rs13191810	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs13191810-C	0.687691	5E-25		0.0444045	[0.036-0.053] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4037086	4037087	rs13191810	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large VLDL particles	115,082 European ancestry individuals	NA	6p21.32		rs13191810-C	0.687691	2E-22		0.0414621	[0.033-0.05] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4037086	4037087	rs13191810	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large VLDL particles	115,082 European ancestry individuals	NA	6p21.32		rs13191810-C	0.687691	9E-24		0.0430671	[0.035-0.051] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4037086	4037087	rs13191810	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of chylomicrons and extremely large VLDL particles	115,082 European ancestry individuals	NA	6p21.32		rs13191810-C	0.687691	2E-16		0.0351965	[0.027-0.044] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4037086	4037087	rs13191810	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	6p21.32		rs13191810-C	0.687691	1E-8		0.0223672	[0.015-0.03] unit increase	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4037086	4037087	rs13191810	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for VLDL particles	115,082 European ancestry individuals	NA	6p21.32		rs13191810-C	0.687691	4E-18		0.0359074	[0.028-0.044] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4037086	4037087	rs13191810	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.32	Intergenic	rs13191810-T	NR	1E-6	(men)	0.0240553	[0.014-0.034] unit decrease	Illumina [13520550] (imputed)	N
615	chr6_mann_hap4	4037109	4037110	rs9271366	26278503	Huang C	2015-11-01	Gastroenterology	Characterization of genetic loci that affect susceptibility to inflammatory bowel diseases in African Americans.	Ulcerative colitis	361 African American cases, 1,797 African American controls	NA	6p21.32	HLA-DQA1	rs9271366-A	NR	7E-6		1.627	[1.315-2.013]	Illumina [130241]	N
615	chr6_mann_hap4	4037109	4037110	rs9271366	23850713	Yang SK	2013-07-14	Gut	Genome-wide association study of Crohn's disease in Koreans revealed three new susceptibility loci and common attributes of genetic susceptibility across ethnic populations.	Crohn's disease	532 Korean ancestry cases, 733 Korean ancestry controls	1,779 Korean ancestry cases, 1,709 Korean ancestry controls	6p21.32	HLA-DRA, HLA-DRB5, BTNL2, HLA-DRB1, HLA-DQA1	rs9271366-A	0.888	5E-12		1.66	[1.44-1.92]	Illumina [5664371] (imputed)	N
615	chr6_mann_hap4	4037109	4037110	rs9271366	23511034	Yang SK	2013-04-01	Inflamm Bowel Dis	Genome-wide association study of ulcerative colitis in Koreans suggests extensive overlapping of genetic susceptibility with Caucasians.	Ulcerative colitis	388 Korean ancestry cases, 739 Korean ancestry controls	417 Korean ancestry cases, 732 Korean ancestry controls	6p21.32	HLA-DRB1, HLA-DQA1	rs9271366-G	0.11	1E-18		2.1	[1.78-2.48]	Illumina [581060]	N
615	chr6_mann_hap4	4037109	4037110	rs9271366	21699788	Okada Y	2011-06-20	Gastroenterology	HLA-Cw*1202-B*5201-DRB1*1502 haplotype increases risk for ulcerative colitis but reduces risk for Crohn's disease.	Ulcerative colitis or Crohn's disease	372 Japanese ancestry Crohn's disease cases, 372 Japanese ancestry ulcerative colitis cases	607 Japanese ancestry Crohn's disease cases, 376 Japanese ancestry ulcerative colitis cases	6p21.32	MHC, HLA-DRB1	rs9271366-C	0.21	2E-70	(UC vs. CD)	4.44	[3.74-5.27]	Illumina [461368]	N
615	chr6_mann_hap4	4037109	4037110	rs9271366	20694011	Ferreira RC	2010-08-08	Nat Genet	Association of IFIH1 and other autoimmunity risk alleles with selective IgA deficiency.	Immunoglobulin A	430 European ancestry cases, 1,090 European ancestry controls	342 European ancestry cases, 886 European ancestry controls	6p21.32	HLA-DRB1	rs9271366-?	0.85	3E-33		7.69	[5.26-11.11]	Illumina [2057134] (imputed)	N
615	chr6_mann_hap4	4037109	4037110	rs9271366	20598377	Nischwitz S	2010-06-30	J Neuroimmunol	Evidence for VAV2 and ZNF433 as susceptibility genes for multiple sclerosis.	Multiple sclerosis	590 European ancestry cases, 825 European ancestry controls	NA	6p21.32	DQA1	rs9271366-G	NR	4E-17		2.62	[2.09-3.28]	Illumina [~ 300000]	N
615	chr6_mann_hap4	4037109	4037110	rs9271366	19838195	Gateva V	2009-11-01	Nat Genet	A large-scale replication study identifies TNIP1, PRDM1, JAZF1, UHRF1BP1 and IL10 as risk loci for systemic lupus erythematosus.	Systemic lupus erythematosus	1,310 European ancestry cases, 7,859 European ancestry controls	1,963 European ancestry cases, 4,329 European ancestry controls	6p21.32	HLA-DRB1	rs9271366-G	0.16	1E-7		1.26	[1.18-1.36]	Illumina [~ 2100000] (imputed)	N
615	chr6_mann_hap4	4037109	4037110	rs9271366	19525955	Bahlo M	2009-06-14	Nat Genet	Genome-wide association study identifies new multiple sclerosis susceptibility loci on chromosomes 12 and 20.	Multiple sclerosis	1,618 European ancestry cases, 3,413 European ancestry controls	2,256 European ancestry cases, 2,310 European ancestry controls	6p21.32	HLA-DRB1	rs9271366-G	0.15	7E-184		2.78	[NR]	Illumina [302098]	N
615	chr6_mann_hap4	4037163	4037164	rs9271367	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on plasmacytoid Dendritic Cell	2,872 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9271367-A	0.85909	2E-29		0.5463	[0.45-0.64] unit decrease	Illumina [17926607] (imputed)	N
615	chr6_mann_hap4	4037163	4037164	rs9271367	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on myeloid Dendritic Cell	2,872 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9271367-A	0.85909	3E-35		0.5882	[0.5-0.68] unit decrease	Illumina [17926605] (imputed)	N
615	chr6_mann_hap4	4037163	4037164	rs9271367	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on Dendritic Cell	2,871 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9271367-A	0.85909	4E-32		0.5586	[0.47-0.65] unit decrease	Illumina [17926566] (imputed)	N
615	chr6_mann_hap4	4037163	4037164	rs9271367	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on CD33- HLA DR+	1,635 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9271367-A	0.85909	2E-12		0.4146	[0.3-0.53] unit decrease	Illumina [16999305] (imputed)	N
615	chr6_mann_hap4	4037253	4037254	rs607929	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	6p21.32	intergenic	rs607929-G	0.4428	4E-9		0.02092051	[0.014-0.028] unit increase	Affymetrix [~ 2500000] (imputed)	N
615	chr6_mann_hap4	4037322	4037323	rs9271375	35074870	Chia R	2022-02-01	Proc Natl Acad Sci U S A	Identification of genetic risk loci and prioritization of genes and pathways for myasthenia gravis: a genome-wide association study.	Late-onset myasthenia gravis	1,278 European ancestry cases, 33,652 European ancestry controls	308 European ancestry cases, 7,056 European ancestry controls	6p21.32		rs9271375-A	0.481	2E-19		0.66	[0.6-0.72]	Illumina [24006246] (imputed)	N
615	chr6_mann_hap4	4037322	4037323	rs9271375	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Urolithiasis	6,223 European ancestry cases, 482,123 European ancestry controls, 11,699 East Asian ancestry cases, 167,027 East Asian ancestry controls	NA	6p21.32		rs9271375-A	NR	5E-11		0.0785	[0.055-0.102] unit decrease	Affymetrix, Illumina [25845211] (imputed)	N
615	chr6_mann_hap4	4037412	4037413	rs28688825	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	6p21.32	NR	rs28688825-?	NR	1E-28				Affymetrix [~ 8270000] (imputed)	N
615	chr6_mann_hap4	4037412	4037413	rs28688825	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs28688825-?	NR	9E-24				Affymetrix [~ 8270000] (imputed)	N
615	chr6_mann_hap4	4037412	4037413	rs28688825	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	6p21.32	AGER, AGPAT1, BRD2, BTNL2, C6orf10, EGFL8, GPSM3, HCG23, HLA-DMA, HLA-DMB, HLA-DOB, HLA-DQA1, HLA-DQA2, HLA-DQB1, HLA-DQB2, HLA-DRA, HLA-DRB1, HLA-DRB5, HLA-DRB6, LOC100294145, MIR6721, MIR6833, NOTCH4, PBX2, PPT2-EGFL8, PSMB8, PSMB9, RNF5, RNF5P1, TAP1, TAP2, TAPSAR1	rs28688825-A	0.883307	5E-31		1.1379826	[1.12-1.16]	Affymetrix [8274727] (imputed)	N
615	chr6_mann_hap4	4037468	4037469	rs28383314	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	6p21.32		rs28383314-T	0.377043	8E-21		0.0374324	[0.03-0.045] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4037468	4037469	rs28383314	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	6p21.32		rs28383314-T	0.377036	7E-12		0.0274798	[0.02-0.035] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4037468	4037469	rs28383314	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs28383314-T	0.377036	2E-25		0.043251	[0.035-0.051] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4037468	4037469	rs28383314	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large HDL	115,082 European ancestry individuals	NA	6p21.32		rs28383314-T	0.377036	6E-13		0.0298794	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4037468	4037469	rs28383314	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs28383314-T	0.377036	2E-27		0.0445853	[0.037-0.053] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4037468	4037469	rs28383314	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small HDL	115,082 European ancestry individuals	NA	6p21.32		rs28383314-T	0.377036	4E-24		0.0415957	[0.034-0.05] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4037468	4037469	rs28383314	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium HDL	115,082 European ancestry individuals	NA	6p21.32		rs28383314-T	0.377036	2E-21		0.0397131	[0.032-0.048] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4037468	4037469	rs28383314	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large HDL	115,082 European ancestry individuals	NA	6p21.32		rs28383314-T	0.377036	4E-8		0.0221728	[0.014-0.03] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4037468	4037469	rs28383314	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in VLDL	115,082 European ancestry individuals	NA	6p21.32		rs28383314-T	0.377036	9E-23		0.0401294	[0.032-0.048] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4037468	4037469	rs28383314	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in HDL	115,082 European ancestry individuals	NA	6p21.32		rs28383314-T	0.377036	8E-21		0.0389843	[0.031-0.047] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4037468	4037469	rs28383314	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total triglycerides levels	115,082 European ancestry individuals	NA	6p21.32		rs28383314-T	0.377036	8E-24		0.0412963	[0.033-0.049] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4037468	4037469	rs28383314	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small HDL	115,082 European ancestry individuals	NA	6p21.32		rs28383314-T	0.377036	5E-22		0.0409595	[0.033-0.049] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4037468	4037469	rs28383314	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total fatty acid levels	115,006 European ancestry individuals	NA	6p21.32		rs28383314-T	0.377051	4E-25		0.0434702	[0.035-0.052] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4037468	4037469	rs28383314	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Saturated fatty acid levels	115,006 European ancestry individuals	NA	6p21.32		rs28383314-T	0.377051	4E-20		0.0385885	[0.03-0.047] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4037468	4037469	rs28383314	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6p21.32		rs28383314-T	0.377036	9E-13		0.0304107	[0.022-0.039] unit increase	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4037468	4037469	rs28383314	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	6p21.32		rs28383314-T	0.377036	1E-11		0.0288571	[0.021-0.037] unit increase	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4037468	4037469	rs28383314	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small HDL	115,082 European ancestry individuals	NA	6p21.32		rs28383314-T	0.377036	8E-22		0.0405037	[0.032-0.049] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4037468	4037469	rs28383314	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6p21.32		rs28383314-T	0.377036	6E-17		0.0342966	[0.026-0.042] unit increase	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4037468	4037469	rs28383314	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	6p21.32		rs28383314-C	NR	4E-59		0.0343	[0.03-0.038] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
615	chr6_mann_hap4	4037468	4037469	rs28383314	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	6p21.32		rs28383314-C	NR	9E-101		0.0363	[0.033-0.04] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
615	chr6_mann_hap4	4037468	4037469	rs28383314	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.32		rs28383314-T	0.375	6E-103				Affymetrix [10369434] (imputed)	N
615	chr6_mann_hap4	4037468	4037469	rs28383314	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DQA1	rs28383314-T	NR	2E-12		0.0225613	[0.016-0.029] unit decrease	Affymetrix [323858] (imputed)	N
615	chr6_mann_hap4	4037468	4037469	rs28383314	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	HLA-DQA1	rs28383314-T	NR	4E-11		0.0212936	[0.015-0.028] unit decrease	Affymetrix [127266] (imputed)	N
615	chr6_mann_hap4	4037468	4037469	rs28383314	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DQA1	rs28383314-T	NR	5E-19		0.0281171	[0.022-0.034] unit increase	Affymetrix [323123] (imputed)	N
615	chr6_mann_hap4	4037468	4037469	rs28383314	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs28383314-T	NR	1E-20		0.027344	[0.022-0.033] unit decrease	Affymetrix [321169] (imputed)	N
615	chr6_mann_hap4	4037468	4037469	rs28383314	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p21.32	NR	rs28383314-C	0.637389	2E-194				Affymetrix, Illumina [19872809] (imputed)	N
615	chr6_mann_hap4	4037468	4037469	rs28383314	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	6p21.32	NR	rs28383314-C	0.624131	6E-199		0.061635	[0.058-0.066] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
615	chr6_mann_hap4	4037468	4037469	rs28383314	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	6p21.32	HLA-DQA1	rs28383314-T	0.375891	4E-76		0.0378536	[0.034-0.042] unit decrease	Affymetrix [NR] (imputed)	N
615	chr6_mann_hap4	4037468	4037469	rs28383314	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	6p21.32	LINC00336	rs28383314-?	NR	4E-49		0.0398	[0.035-0.045] unit decrease	Affymetrix [5701386] (imputed)	N
615	chr6_mann_hap4	4037468	4037469	rs28383314	30643255	Kristjansson RP	2019-01-14	Nat Genet	A loss-of-function variant in ALOX15 protects against nasal polyps and chronic rhinosinusitis.	Nasal polyps	86 European ancestry whole-genome sequenced cases, 4,280 European ancestry cases, 13,941 European ancestry whole-genome sequenced controls, 700,740 European ancestry controls	NA	6p21.32	intergenic	rs28383314-C	0.630	5E-8		1.14	[1.09-1.19]	Affymetrix, Illumina [up to 37123566] (imputed)	N
615	chr6_mann_hap4	4037468	4037469	rs28383314	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	6p21.32	HLA-DQA1	rs28383314-T	0.377	3E-9		0.086	[0.059-0.113] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
615	chr6_mann_hap4	4037468	4037469	rs28383314	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	6p21.32	intergenic	rs28383314-C	0.6172	9E-64		0.06028895	[0.053-0.067] unit increase	Affymetrix [~ 2500000] (imputed)	N
615	chr6_mann_hap4	4037468	4037469	rs28383314	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	6p21.32	intergenic	rs28383314-C	0.6171	7E-27		0.03829286	[0.031-0.045] unit increase	Affymetrix [~ 2500000] (imputed)	N
615	chr6_mann_hap4	4037468	4037469	rs28383314	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	6p21.32	intergenic	rs28383314-C	0.6172	1E-60		0.05870737	[0.052-0.066] unit increase	Affymetrix [~ 2500000] (imputed)	N
615	chr6_mann_hap4	4037534	4037535	rs144934262	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on CD33+ HLA DR+ CD14-	1,579 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs144934262-T	0.05991	2E-10		0.5304	[0.37-0.69] unit increase	Illumina [16961968] (imputed)	N
615	chr6_mann_hap4	4037712	4037713	rs9271393	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Peripheral artery disease	7,114 European ancestry cases, 475,964 European ancestry controls, 4,112 East Asian ancestry cases, 173,601 East Asian ancestry controls	NA	6p21.32		rs9271393-C	NR	2E-8		0.116	[0.075-0.157] unit increase	Affymetrix, Illumina [25844651] (imputed)	N
615	chr6_mann_hap4	4037775	4037776	rs9271401	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs9271401-G	0.245	9E-21	(Complement C4, C4A.C4B.4481.34.2)	0.28	[0.22-0.34] unit decrease	Affymetrix [10572788] (imputed)	N
615	chr6_mann_hap4	4037775	4037776	rs9271401	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs9271401-G	0.245	5E-21	(cAMP-specific 3',5'-cyclic phosphodiesterase 4D, PDE4D.5255.22.3)	0.28	[0.22-0.34] unit decrease	Affymetrix [10572788] (imputed)	N
615	chr6_mann_hap4	4037775	4037776	rs9271401	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs9271401-G	0.245	1E-24	(Glutamate receptor 4, GRIA4.10760.107.3)	0.3	[0.24-0.36] unit decrease	Affymetrix [10572788] (imputed)	N
615	chr6_mann_hap4	4037838	4037839	rs9271406	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RPL30	5,357 Icelandic ancestry individuals	NA	6p21.32		rs9271406-G	0.4339	4E-12		0.126569	[0.091-0.162] unit increase	Illumina [7506463] (imputed)	N
615	chr6_mann_hap4	4037838	4037839	rs9271406	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	6p21.32		rs9271406-?	NR	2E-8		0.00512675	[0.0033-0.0069] unit decrease	NR [NR]	N
615	chr6_mann_hap4	4037838	4037839	rs9271406	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs9271406-A	NR	2E-24		0.0290677	[0.023-0.035] unit decrease	Affymetrix [321169] (imputed)	N
615	chr6_mann_hap4	4037838	4037839	rs9271406	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6p21.32	NR	rs9271406-G	0.497785	7E-25		0.024019469	[0.019-0.029] unit increase	Affymetrix [93095623] (imputed)	N
615	chr6_mann_hap4	4038109	4038110	rs9271421	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	HLA-DQA1	rs9271421-C	0.861	5E-29	(GDH/6PGL endoplasmic bifunctional protein, H6PD.7161.25.3)	0.39	[0.31-0.47] unit decrease	Affymetrix [10572788] (imputed)	N
615	chr6_mann_hap4	4038235	4038236	rs9271429	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	Systemic lupus erythematosus	1,639 East Asian ancestry cases, 2,410 East Asian ancestry controls	NA			rs9271429-G	NR	2E-11		0.2667	[0.19-0.34] unit decrease	Illumina [NR] (imputed)	N
615	chr6_mann_hap4	4038281	4038282	rs9271431	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs9271431-A	NR	2E-14		0.0217731	[0.016-0.027] unit increase	Affymetrix [319769] (imputed)	N
615	chr6_mann_hap4	4038281	4038282	rs9271431	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs9271431-A	NR	8E-14		0.0213218	[0.016-0.027] unit increase	Affymetrix [319769] (imputed)	N
615	chr6_mann_hap4	4038878	4038879	rs9271469	34212547	An J	2021-07-01	Allergy Asthma Immunol Res	Genome-Wide Association Study of Korean Asthmatics: A Comparison With UK Asthmatics.	Adult asthma	1,386 Korean ancestry cases, 5,205 Korean ancestry controls	NA	6p21.32		rs9271469-C	0.28	4E-8		1.33	[1.2-1.48]	Affymetrix [4922160] (imputed)	N
615	chr6_mann_hap4	4038961	4038962	rs76815088	35074870	Chia R	2022-02-01	Proc Natl Acad Sci U S A	Identification of genetic risk loci and prioritization of genes and pathways for myasthenia gravis: a genome-wide association study.	Myasthenia gravis	1,873 European ancestry cases, 36,370 European ancestry controls	7,412 European ancestry individuals	6p21.32		rs76815088-C	0.061	6E-16		0.42	[0.34-0.52]	Illumina [24006246] (imputed)	N
615	chr6_mann_hap4	4039469	4039470	rs34104805	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.32	NR	rs34104805-?	NR	1E-13				Affymetrix [~ 8270000] (imputed)	N
615	chr6_mann_hap4	4039469	4039470	rs34104805	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs34104805-?	NR	4E-17				Affymetrix [~ 8270000] (imputed)	N
615	chr6_mann_hap4	4039518	4039519	rs35597309	25129146	Wu C	2014-08-17	Nat Genet	Joint analysis of three genome-wide association studies of esophageal squamous cell carcinoma in Chinese populations.	Esophageal squamous cell carcinoma	5,337 Han Chinese ancestry cases, 5,787 Han Chinese ancestry controls	9,654 Han Chinese ancestry cases, 10,058 Han Chinese ancestry  controls	6p21.32	HLA	rs35597309-A	0.072	1E-7		1.19	[1.12-1.27]	Affymetrix, Illumina [7556215] (imputed)	N
615	chr6_mann_hap4	4039552	4039553	rs9271500	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	6p21.32		rs9271500-C	0.54239	1E-9		0.0250109	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4039615	4039616	rs73728611	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs73728611-A	0.878781	2E-8		0.0350323	[0.023-0.047] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4039615	4039616	rs73728611	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs73728611-A	0.878781	2E-8		0.0353342	[0.023-0.048] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4039615	4039616	rs73728611	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs73728611-A	0.878781	5E-9		0.0365405	[0.024-0.049] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4039615	4039616	rs73728611	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	6p21.32		rs73728611-A	0.878767	4E-9		0.0354428	[0.024-0.047] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4039615	4039616	rs73728611	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs73728611-A	0.878781	5E-8		0.0343432	[0.022-0.047] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4039615	4039616	rs73728611	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs73728611-A	0.878781	3E-8		0.0346994	[0.022-0.047] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4039615	4039616	rs73728611	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large VLDL particles	115,082 European ancestry individuals	NA	6p21.32		rs73728611-A	0.878781	3E-8		0.0346989	[0.022-0.047] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4039615	4039616	rs73728611	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large VLDL particles	115,082 European ancestry individuals	NA	6p21.32		rs73728611-A	0.878781	5E-8		0.0343334	[0.022-0.047] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4039615	4039616	rs73728611	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of chylomicrons and extremely large VLDL particles	115,082 European ancestry individuals	NA	6p21.32		rs73728611-A	0.878781	2E-8		0.0352602	[0.023-0.048] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4039615	4039616	rs73728611	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	6p21.32	HLA-DQA1	rs73728611-A	0.8765	1E-9		0.003	[0.0022-0.0038] unit increase	Affymetrix [15275733] (imputed)	N
615	chr6_mann_hap4	4046279	4046280	rs9271536	33204752	Butler-Laporte G	2020-09-24	Open Forum Infect Dis	Genetic Determinants of Antibody-Mediated Immune Responses to Infectious Diseases Agents: A Genome-Wide and HLA Association Study.	Epstein-Barr virus VCA p18 antibody levels	8,518 White British ancestry individuals	NA	6p21.32	HLA-DQA1	rs9271536-A	0.180	7E-21		0.19	[0.15-0.23] unit increase	NR [25472218] (imputed)	N
615	chr6_mann_hap4	4046279	4046280	rs9271536	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Terminally Differentiated CD4+ T cell %T cell	3,427 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9271536-T	0.77188	3E-18		0.291	[0.23-0.36] unit decrease	Illumina [18349913] (imputed)	N
615	chr6_mann_hap4	4046279	4046280	rs9271536	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Terminally Differentiated CD4+ T cell %CD4+ T cell	3,427 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9271536-T	0.77188	8E-17		0.2806	[0.21-0.35] unit decrease	Illumina [18349913] (imputed)	N
615	chr6_mann_hap4	4046279	4046280	rs9271536	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	SSC-A on CD4+ T cell	3,113 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9271536-T	0.76919	9E-14		0.2591	[0.19-0.33] unit decrease	Illumina [18030777] (imputed)	N
615	chr6_mann_hap4	4046279	4046280	rs9271536	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Naive CD4+ T cell %CD4+ T cell	3,427 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9271536-T	0.77188	4E-12		0.2324	[0.17-0.3] unit increase	Illumina [18349913] (imputed)	N
615	chr6_mann_hap4	4046279	4046280	rs9271536	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Effector Memory CD4+ T cell %T cell	3,427 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9271536-T	0.77188	3E-12		0.2368	[0.17-0.3] unit decrease	Illumina [18349913] (imputed)	N
615	chr6_mann_hap4	4046283	4046284	rs9271537	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Terminally Differentiated CD4+ T cell Absolute Count	3,395 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9271537-T	0.6246700000000001	2E-9		0.1866	[0.13-0.25] unit decrease	Illumina [18332267] (imputed)	N
615	chr6_mann_hap4	4046329	4046330	rs9271539	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p21.32	HLA-DRB1, HLA-DQA1	rs9271539-?	0.56	2E-7	(Turkish)	1.6393442	[1.35-1.96]	Illumina [up to 547389]	N
615	chr6_mann_hap4	4046459	4046460	rs9271547	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	HLA-DQA2	rs9271547-A	0.551	6E-80	(HLA class II histocompatibility antigen, DQ alpha 2 chain, HLA.DQA2.7757.5.3)	0.45	[0.41-0.49] unit increase	Affymetrix [10572788] (imputed)	N
615	chr6_mann_hap4	4046540	4046541	rs74995702	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs affecting bone structure and mineralization)	6,143 East Asian ancestry cases, 172,583 East Asian ancestry controls	NA	6p21.32		rs74995702-G	0.152630075	8E-16		0.21422668	[0.16-0.27] unit increase	Illumina [13429980] (imputed)	N
615	chr6_mann_hap4	4046621	4046622	rs9271556	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	6p21.32		rs9271556-T	0.355911	1E-10		0.0285997	[0.02-0.037] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4046797	4046798	rs9271573	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small LDL	115,082 European ancestry individuals	NA	6p21.32		rs9271573-A	0.406337	9E-24		0.0408933	[0.033-0.049] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4046797	4046798	rs9271573	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium LDL	115,082 European ancestry individuals	NA	6p21.32		rs9271573-A	0.406337	6E-23		0.0404102	[0.032-0.048] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4046797	4046798	rs9271573	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large LDL	115,082 European ancestry individuals	NA	6p21.32		rs9271573-A	0.406337	6E-20		0.0376072	[0.03-0.046] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4046797	4046798	rs9271573	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in LDL	115,082 European ancestry individuals	NA	6p21.32		rs9271573-A	0.406337	1E-21		0.0393213	[0.031-0.047] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4046797	4046798	rs9271573	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to monounsaturated fatty acids	115,006 European ancestry individuals	NA	6p21.32		rs9271573-A	0.406357	1E-12		0.0285962	[0.021-0.036] unit increase	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4046797	4046798	rs9271573	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Monounsaturated fatty acid levels	115,006 European ancestry individuals	NA	6p21.32		rs9271573-A	0.406357	4E-25		0.0428694	[0.035-0.051] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4046797	4046798	rs9271573	32231244	Xie J	2020-03-30	Nat Commun	The genetic architecture of membranous nephropathy and its potential to improve non-invasive diagnosis.	Membranous nephropathy	2,150 European ancestry cases, 5,829 European ancestry controls, 1,612 East Asian ancestry cases, 1,970 East Asian ancestry controls	826 Chinese ancestry cases, 1,239 Chinese ancestry controls	6p21.32	HLA	rs9271573-A	NR	3E-154		2.41	[2.26-2.57]	Illumina [~ 7000000] (imputed)	N
615	chr6_mann_hap4	4046797	4046798	rs9271573	32231244	Xie J	2020-03-30	Nat Commun	The genetic architecture of membranous nephropathy and its potential to improve non-invasive diagnosis.	Membranous nephropathy	2,150 European ancestry cases, 5,829 European ancestry controls	NA	6p21.32	HLA	rs9271573-A	0.44	2E-60		2.06	[1.89-2.25]	Illumina [~ 7000000] (imputed)	N
615	chr6_mann_hap4	4046797	4046798	rs9271573	32231244	Xie J	2020-03-30	Nat Commun	The genetic architecture of membranous nephropathy and its potential to improve non-invasive diagnosis.	Membranous nephropathy	1,612 East Asian ancestry cases, 1,970 East Asian ancestry controls	NA	6p21.32	HLA	rs9271573-A	0.35	4E-102		2.97	[2.69-3.28]	Illumina [~ 7000000] (imputed)	N
615	chr6_mann_hap4	4046797	4046798	rs9271573	28076899	Taylor KE	2017-01-11	Arthritis Rheumatol	Genome-Wide Association Analysis Reveals Genetic Heterogeneity of Sjogren's Syndrome According to Ancestry.	Sjogren's syndrome	585 European ancestry cases, up to 51 African ancestry cases, up to 164 Hispanic/Native american cases, up to 570 Asian ancestry cases, up to 59 cases, 1,546 European ancestry controls, 495 African ancestry controls, 237 Hispanic/Native American controls, 306 Asian ancestry controls, 148 controls.	NA	6p21.32	HLA-DQA1, HLA-DQB1, HLA-DRB1	rs9271573-?		3E-42		2.02	[1.82-2.23]	Illumina [1444884]	N
615	chr6_mann_hap4	4046797	4046798	rs9271573	28076899	Taylor KE	2017-01-11	Arthritis Rheumatol	Genome-Wide Association Analysis Reveals Genetic Heterogeneity of Sjogren's Syndrome According to Ancestry.	Sjogren's syndrome	585 European ancestry cases, 1,546 European ancestry controls	NA	6p21.32	HLA-DQA1, HLA-DQB1, HLA-DRB1, HLA-DQA2	rs9271573-?		3E-34		2.29	[2.01-2.62]	Illumina [1444884]	N
615	chr6_mann_hap4	4046919	4046920	rs2395225	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs2395225-C	NR	3E-11		0.0204906	[0.014-0.027] unit decrease	Affymetrix [321169] (imputed)	N
615	chr6_mann_hap4	4046930	4046931	rs9271578	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs9271578-A	NR	2E-24		0.0287397	[0.023-0.034] unit decrease	Affymetrix [319769] (imputed)	N
615	chr6_mann_hap4	4046930	4046931	rs9271578	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs9271578-A	NR	3E-23		0.0280541	[0.023-0.034] unit decrease	Affymetrix [319769] (imputed)	N
615	chr6_mann_hap4	4046930	4046931	rs9271578	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	6p21.32		rs9271578-T	0.501806	3E-49		0.037933793	[0.033-0.043] unit increase	Affymetrix [93095623] (imputed)	N
615	chr6_mann_hap4	4046932	4046933	rs9271579	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic sinusitis	7,529 European ancestry cases, 444,966 European ancestry controls, 4,617 East Asian ancestry cases, 152,226 East Asian ancestry controls	NA	6p21.32		rs9271579-A	NR	4E-36		0.1984	[0.17-0.23] unit increase	Affymetrix, Illumina [25838895] (imputed)	N
615	chr6_mann_hap4	4046936	4046937	rs9271580	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Nasal polyps	5,093 European ancestry cases, 444,966 European ancestry controls, 160 East Asian ancestry cases, 151,846 East Asian ancestry controls	NA	6p21.32		rs9271580-G	NR	2E-40		0.352	[0.3-0.4] unit increase	Affymetrix, Illumina [25837843] (imputed)	N
615	chr6_mann_hap4	4047017	4047018	rs17533090	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs17533090-T	0.22	5E-9		4.5	[3.42-5.91]	Illumina [NR] (imputed)	N
615	chr6_mann_hap4	4047030	4047031	rs35062987	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	6p21.32	intergenic	rs35062987-T	0.2102	2E-39		0.0418	[0.036-0.048] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
615	chr6_mann_hap4	4047063	4047064	rs34831921	32678081	Timmers PRHJ	2020-07-16	Nat Commun	Multivariate genomic scan implicates novel loci and haem metabolism in human ageing.	Aging traits (healthspan, parental lifespan or longevity) (multivariate analysis)	at least 837,415 European ancestry individuals	NA	6p21.32	HLA-DRB1, HLA-DQA1	rs34831921-A	0.1	6E-13				NR [7320282]	N
615	chr6_mann_hap4	4047063	4047064	rs34831921	29030599	Joshi PK	2017-10-13	Nat Commun	Genome-wide meta-analysis associates HLA-DQA1/DRB1 and LPA and lifestyle factors with human longevity.	Parental lifespan	up to 586,626 European ancestry individuals, up to 19,433 African ancestry individuals	NA	6p21.32	HLA-DQA1, HLA-DRB1	rs34831921-A	0.09	4E-8	(EA)	0.6	years increase	Affymetrix, Illumina [at least 13643373] (imputed)	N
615	chr6_mann_hap4	4047178	4047179	rs9271585	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	6p21.32	HLA-DQA1	rs9271585-A	0.4121	3E-7	(East Asian)	0.03	[0.019-0.041] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
615	chr6_mann_hap4	4047178	4047179	rs9271585	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	6p21.32	HLA-DQA1	rs9271585-A	0.3329	7E-12		0.0249	[0.018-0.032] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
615	chr6_mann_hap4	4047178	4047179	rs9271585	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	6p21.32	NR	rs9271585-A	0.3502	8E-8	(men)	0.0311	[0.02-0.042] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
615	chr6_mann_hap4	4047198	4047199	rs9271586	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.32		rs9271586-G	0.495	6E-115				Affymetrix [10369434] (imputed)	N
615	chr6_mann_hap4	4047224	4047225	rs3129763	21779181	Gorlova O	2011-07-14	PLoS Genet	Identification of novel genetic markers associated with clinical phenotypes of systemic sclerosis through a genome-wide association strategy.	Systemic sclerosis	2,296 European ancestry cases, 5,172 European ancestry controls	3,175 European ancestry cases, 4,210 European ancestry controls	6p21.32	HLA-DRB1, HLA-DQA1	rs3129763-?	0.25	1E-11	(ATA positive)	1.65	[1.42-1.91]	Illumina [NR] (imputed)	N
615	chr6_mann_hap4	4047252	4047253	rs9271588	31879220	Lin GW	2019-12-23	Lancet Oncol	Genetic risk of extranodal natural killer T-cell lymphoma: a genome-wide association study in multiple populations.	Extranodal natural killer T-cell lymphoma (nasal type)	700 Han Chinese ancestry cases, 7,752 Han Chinese ancestry controls	717 East Asian ancestry cases, 12,650 East Asian ancestry controls	6p21.32	HLA-DRB1	rs9271588-C	0.4	9E-26		1.53	[1.41-1.65]	Illumina [3892410] (imputed)	N
615	chr6_mann_hap4	4047252	4047253	rs9271588	31301374	Noguchi E	2019-07-10	J Allergy Clin Immunol	HLA-DQ and RBFOX1 as susceptibility genes for an outbreak of hydrolyzed wheat allergy.	Hydrolysed wheat protein allergy	452 Japanese ancestry cases, 2,700 Japaneses ancestry controls	45 Japanese ancestry cases, 326 Japaneses ancestry controls	6p21.32	NR	rs9271588-G	0.523	1E-26		2.3	[1.98-2.70]	Illumina [6575663] (imputed)	N
615	chr6_mann_hap4	4047252	4047253	rs9271588	31102405	Labreche K	2019-05-17	Neuro Oncol	A genome-wide association study identifies susceptibility loci for primary central nervous system lymphoma at 6p25.3 and 3p22.1: a LOC network study.	Primary central nervous system lymphoma	475 European ancestry cases, 1,134 European ancestry controls	NA	6p21.32	NR	rs9271588-?	NR	2E-6		1.45	[1.25-1.68]	Illumina [> 10000000] (imputed)	N
615	chr6_mann_hap4	4047252	4047253	rs9271588	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	6p21.32	intergenic	rs9271588-C	0.5051	4E-66		0.06142442	[0.054-0.068] unit increase	Affymetrix [~ 2500000] (imputed)	N
615	chr6_mann_hap4	4047252	4047253	rs9271588	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	6p21.32	intergenic	rs9271588-C	0.5051	2E-58		0.0576552	[0.051-0.065] unit increase	Affymetrix [~ 2500000] (imputed)	N
615	chr6_mann_hap4	4047252	4047253	rs9271588	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	6p21.32	intergenic	rs9271588-C	0.5051	1E-58		0.05764791	[0.051-0.065] unit increase	Affymetrix [~ 2500000] (imputed)	N
615	chr6_mann_hap4	4047252	4047253	rs9271588	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	6p21.32	intergenic	rs9271588-C	0.5051	9E-68		0.06247162	[0.055-0.07] unit increase	Affymetrix [~ 2500000] (imputed)	N
615	chr6_mann_hap4	4047252	4047253	rs9271588	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	6p21.32	intergenic	rs9271588-C	0.5051	2E-66		0.06164672	[0.055-0.069] unit increase	Affymetrix [~ 2500000] (imputed)	N
615	chr6_mann_hap4	4047252	4047253	rs9271588	24097066	Li Y	2013-10-06	Nat Genet	A genome-wide association study in Han Chinese identifies a susceptibility locus for primary Sjogren's syndrome at 7q11.23.	Sjogren's syndrome	542 Han Chinese ancestry cases, 1,050 Han Chinese ancestry controls	1,303 Han Chinese ancestry cases, 2,727 Han Chinese ancestry controls	6p21.32	HLA-DRB1, HLA-DQA1, c6orf10, BTNL2, HLA-DRA, HLA-DRB5, HLA-DRB6	rs9271588-T	0.532	9E-37		1.75	[1.59-1.89]	Affymetrix [556134]	N
615	chr6_mann_hap4	4047357	4047358	rs17599077	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs17599077-C	0.19	2E-8		4.08	[3.13-5.32]	Illumina [NR] (imputed)	N
615	chr6_mann_hap4	4047497	4047498	rs9271593	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs9271593-C	NR	4E-12		0.0198725	[0.014-0.025] unit increase	Affymetrix [321016] (imputed)	N
615	chr6_mann_hap4	4047547	4047548	rs34967069	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Tumor necrosis factor receptor superfamily member 6 levels	21,758 European ancestry individuals	9,173 individuals	6p21.32		rs34967069-T	0.12	3E-20		0.1381	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
615	chr6_mann_hap4	4047547	4047548	rs34967069	30642433	Timmers PR	2019-01-15	Elife	Genomics of 1 million parent lifespans implicates novel pathways and common diseases and distinguishes survival chances.	Parental lifespan	at least 500,193 European ancestry offspring	NA	6p21.32	HLA-DQA1	rs34967069-T	0.07	4E-9		0.5613	[0.37-0.75] years increase	NR [up to 9000000] (imputed)	N
615	chr6_mann_hap4	4047590	4047591	rs9271597	30674883	Jin Y	2019-01-23	Nat Commun	Early-onset autoimmune vitiligo associated with an enhancer variant haplotype that upregulates class II HLA expression.	Vitiligo (late onset)	1,467 European ancestry cases, 19,156 European ancestry controls	977 European ancestry cases, 727 European ancestry controls	6p21.32	NR	rs9271597-A	NR	4E-34		1.63	[1.55-1.71]	NR [up to 494043] (imputed)	N
615	chr6_mann_hap4	4047590	4047591	rs9271597	30674883	Jin Y	2019-01-23	Nat Commun	Early-onset autoimmune vitiligo associated with an enhancer variant haplotype that upregulates class II HLA expression.	Vitiligo (early onset)	704 European ancestry cases, 9,031 European ancestry controls	375 European ancestry cases, 1,455 European ancestry controls	6p21.32	NR	rs9271597-A	NR	2E-40		2.23	[2.11-2.35]	NR [up to 494043] (imputed)	N
615	chr6_mann_hap4	4047590	4047591	rs9271597	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	Factor VIII levels	25,897 European ancestry individuals, 4,500 African American individuals, 773 Asian ancestry individuals, 1,440 Hispanic individuals	NA	6p21.32	HLA-DQA1	rs9271597-A	0.42	6E-6	(EA)	0.0137	[0.0084-0.019] unit decrease	Affymetrix, Illumina [13887196] (imputed)	N
615	chr6_mann_hap4	4047590	4047591	rs9271597	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	Factor VIII levels	25,897 European ancestry individuals, 4,500 African American individuals, 773 Asian ancestry individuals, 1,440 Hispanic individuals	NA	6p21.32	HLA-DQA1	rs9271597-A	0.41	1E-8		0.0152	[0.0099-0.0205] unit decrease	Affymetrix, Illumina [13887196] (imputed)	N
615	chr6_mann_hap4	4047590	4047591	rs9271597	27723757	Jin Y	2016-11-01	Nat Genet	Genome-wide association studies of autoimmune vitiligo identify 23 new risk loci and highlight key pathways and regulatory variants.	Vitiligo	2,853 European ancestry cases and 37,405 European ancestry controls	1,827 European ancestry cases and 2,181 European ancestry controls	6p21.32	HLA-DRB1, HLA-DQA1	rs9271597-A	0.4269	3E-89		1.772	NR	Illumina [8966411] (imputed)	N
615	chr6_mann_hap4	4047730	4047731	rs3129765	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	FSC-A on CD4+ T cell	3,113 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs3129765-G	0.75653	1E-10		0.2158	[0.15-0.28] unit decrease	Illumina [18030777] (imputed)	N
615	chr6_mann_hap4	4047750	4047751	rs9271605	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	6p21.32		rs9271605-A	0.35118	1E-6		0.034564	[0.021-0.049] unit increase	Affymetrix [15580782] (imputed)	N
615	chr6_mann_hap4	4047771	4047772	rs112396255	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs112396255-G	0.22	5E-9		4.5	[3.42-5.91]	Illumina [NR] (imputed)	N
615	chr6_mann_hap4	4047869	4047870	rs73728618	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs73728618-T	NR	6E-33		1.481	[1.389-1.58]	Affymetrix [7846216] (imputed)	N
615	chr6_mann_hap4	4047890	4047891	rs9271608	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	up to 92,771 European ancestry males, up to 113,387 European ancestry females	NA	6p21.32	HLA-DQA1	rs9271608-G	0.22	2E-17		0.042	[0.032-0.052] unit increase	Affymetrix, Illumina, Perlegen [2437193] (imputed)	N
615	chr6_mann_hap4	4047911	4047912	rs9271611	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	6p21.32	NR	rs9271611-G	0.41	5E-19		1.16	[1.12-1.2]	Illumina [8468885] (imputed)	N
615	chr6_mann_hap4	4047911	4047912	rs9271611	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Keratinocyte cancer (MTAG)	at least 18,538 European ancestry cases, at least 340,302 European ancestry controls	NA	6p21.32	HLA-DQA1	rs9271611-G	0.379011	2E-22		1.09	[1.07-1.11]	Affymetrix [7600000] (imputed)	N
615	chr6_mann_hap4	4048276	4048277	rs9271629	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Lymphocyte Absolute Count	3,653 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9271629-A	0.71717	2E-8		0.1945	[0.13-0.26] unit increase	Illumina [18427377] (imputed)	N
615	chr6_mann_hap4	4048483	4048484	rs9271640	25616667	Goris A	2015-01-22	Brain	Genetic variants are major determinants of CSF antibody levels in multiple sclerosis.	Oligoclonal band status in multiple sclerosis	2,232 European ancestry OCB positive individuals, 275 European ancestry OCB negative individuals, 439 OCB positive individuals, 80 OCB negative individuals	3,026 OCB positive individuals, 452 OCB negative individuals	6p21.32	HLA-DRB1	rs9271640-A	NR	5E-12		1.56	[1.38-1.77]	NR [485522]	N
615	chr6_mann_hap4	4048483	4048484	rs9271640	23472185	Mero IL	2013-03-05	PLoS One	Oligoclonal band status in Scandinavian multiple sclerosis patients is associated with specific genetic risk alleles.	Multiple sclerosis (OCB status)	1,367 European ancestry OCB positive cases, 161 European ancestry OCB negative cases, 428 European ancestry controls	NA	6p21.32	HLA-DQA1	rs9271640-?	NR	2E-20	(OCB positive vs. controls)	2.37	[1.97-2.84]	Illumina [495970]	N
615	chr6_mann_hap4	4048502	4048503	rs9271642	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in IDL	115,082 European ancestry individuals	NA	6p21.32		rs9271642-A	0.407279	2E-21		0.0389581	[0.031-0.047] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4048502	4048503	rs9271642	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	6p21.32		rs9271642-A	0.407279	9E-12		0.028651	[0.02-0.037] unit increase	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4048502	4048503	rs9271642	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6p21.32	HLA-DQA1	rs9271642-G	0.59407	9E-33		0.032831848	[0.027-0.038] unit increase	Affymetrix [93095623] (imputed)	N
615	chr6_mann_hap4	4048893	4048894	rs28421666	27436580	Cui Q	2016-07-19	Hum Mol Genet	An extended genome-wide association study identifies novel susceptibility loci for nasopharyngeal carcinoma.	Nasopharyngeal carcinoma	1,583 Southern Chinese ancestry cases, 2,979 Southern Chinese ancestry controls	5,463 Southern Chinese ancestry cases, 5,591 Southern Chinese ancestry controls	6p21.32	NR	rs28421666-?	0.87	1E-10		1.64	[1.43-1.92]	Illumina [463250]	N
615	chr6_mann_hap4	4048893	4048894	rs28421666	20512145	Bei JX	2010-05-30	Nat Genet	A genome-wide association study of nasopharyngeal carcinoma identifies three new susceptibility loci.	Nasopharyngeal carcinoma	1,583 Chinese ancestry cases, 1,894 Chinese ancestry controls	3,507 Chinese ancestry cases, 3,063 Chinese ancestry controls, 284  Chinese ancestry trios	6p21.32	HLA-DQ, HLA-DR	rs28421666-?	0.88	2E-18		1.49	[1.37-1.64]	Illumina [464328]	N
615	chr6_mann_hap4	4048949	4048950	rs566952760	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs566952760-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
615	chr6_mann_hap4	4048952	4048953	rs28383322	29227965	Pilling LC	2017-12-01	Aging (Albany NY)	Human longevity: 25 genetic loci associated in 389,166 UK biobank participants.	Parental longevity (mother's attained age)	412,937 British ancestry individuals	NA	6p21.32	HLA-DQA1, HLA-DRB1	rs28383322-C	NR	4E-9				Affymetrix [11535925] (imputed)	N
615	chr6_mann_hap4	4048952	4048953	rs28383322	29227965	Pilling LC	2017-12-01	Aging (Albany NY)	Human longevity: 25 genetic loci associated in 389,166 UK biobank participants.	Parental longevity (combined parental attained age, Martingale residuals)	389,166 British ancestry individuals	NA	6p21.32	HLA-DRB1, HLA-DQA1	rs28383322-C	0.783	5E-11		0.0182	[0.013-0.024] unit increase	Affymetrix [11535925] (imputed)	N
615	chr6_mann_hap4	4048989	4048990	rs9271673	33143745	Andlauer TFM	2020-11-04	BMC Med	Treatment- and population-specific genetic risk factors for anti-drug antibodies against interferon-beta: a GWAS.	Neutralising antibody response to interferon beta therapy in multiple sclerosis (antibody titre; IFN?-1a subcutaneous)	up to 2,000 German and Swedish ancestry individuals	up to 757 German and Swedish ancestry individuals	6p21.32		rs9271673-C	NR	2E-28		0.37	[0.31-0.43] unit increase	Illumina [8550834] (imputed)	N
615	chr6_mann_hap4	4049237	4049238	rs9271695	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	6p21.32	NR	rs9271695-G	0.8044	1E-13		1.09	[1.07-1.12]	Affymetrix, Illumina [16900397] (imputed)	N
615	chr6_mann_hap4	4049301	4049302	rs35508382	31605138	Avitabile M	2019-09-07	Carcinogenesis	Neural crest-derived tumor neuroblastoma and melanoma share 1p13.2 as susceptibility locus that shows a long-range interaction with the SLC16A1 gene.	Neuroblastoma or malignant cutaneous melanoma	2,101 European ancestry neuroblastoma cases, 12,874 European ancestry malignant cutaneous melanoma cases, 27,405 European ancestry controls	2,039 European ancestry neuroblastoma cases, 508 European ancestry malignant cutaneous melanoma cases, 3,469 European ancestry controls	6p21.32	HLA-DRB1, HLA-DQA1	rs35508382-G	0.09124	2E-6		1.1408801	[1.08-1.20]	NR [NR] (imputed)	N
615	chr6_mann_hap4	4049355	4049356	rs9271700	33143745	Andlauer TFM	2020-11-04	BMC Med	Treatment- and population-specific genetic risk factors for anti-drug antibodies against interferon-beta: a GWAS.	Neutralising antibody response to interferon beta therapy in multiple sclerosis (presence of antibodies; IFN?-1a subcutaneous)	up to 2,000 German and Swedish ancestry individuals	up to 757 German and Swedish ancestry individuals	6p21.32		rs9271700-G	0.42	5E-27		1.25	[1.01-1.49] unit increase	Illumina [8550834] (imputed)	N
615	chr6_mann_hap4	4049356	4049357	rs9271701	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6p21.32	NR	rs9271701-T	0.1795	2E-17		1.067	[1.051-1.082]	Affymetrix [15688218] (imputed)	N
615	chr6_mann_hap4	4049401	4049402	rs35324266	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Squamous cell carcinoma	9,674 European ancestry cases, 625,657 European ancestry controls	NA	6p21.32	HLA-DQA1	rs35324266-T	0.041654	4E-9		1.14	[1.10-1.18]	Affymetrix, Illumina [up to 9061544] (imputed)	N
615	chr6_mann_hap4	4049622	4049623	rs9271718	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs9271718-T	NR	1E-18		0.0262825	[0.02-0.032] unit increase	Affymetrix [321169] (imputed)	N
615	chr6_mann_hap4	4049676	4049677	rs9271721	33143745	Andlauer TFM	2020-11-04	BMC Med	Treatment- and population-specific genetic risk factors for anti-drug antibodies against interferon-beta: a GWAS.	Binding antibody response to interferon beta therapy in multiple sclerosis (antibody levels; IFN?-1a subcutaneous and intramuscular)	up to 2,000 German and Swedish ancestry individuals	up to 757 German and Swedish ancestry individuals	6p21.32		rs9271721-G	NR	5E-22		0.32949224	[0.26-0.4] unit increase	Illumina [8550834] (imputed)	N
615	chr6_mann_hap4	4049765	4049766	rs9271730	33766948	Zhu Z	2021-03-25	Eur Respir J	A large-scale genome-wide association analysis of lung function in the Chinese population identifies novel loci and highlights shared genetic etiology with obesity.	Lung function (FVC) and body mass index	up to 100,285 Chinese ancestry individuals	up to 457,756 European ancestry individuals	6p21.32		rs9271730-G	NR	2E-14	(East Asian)			Affymetrix [NR] (imputed)	N
615	chr6_mann_hap4	4049765	4049766	rs9271730	33766948	Zhu Z	2021-03-25	Eur Respir J	A large-scale genome-wide association analysis of lung function in the Chinese population identifies novel loci and highlights shared genetic etiology with obesity.	Lung function (FEV1) and body mass index	up to 100,285 Chinese ancestry individuals	up to 457,756 European ancestry individuals	6p21.32		rs9271730-G	NR	8E-15	(East Asian)			Affymetrix [NR] (imputed)	N
615	chr6_mann_hap4	4049784	4049785	rs9271732	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs9271732-G	NR	3E-8		0.0190926	[0.012-0.026] unit decrease	Affymetrix [321169] (imputed)	N
615	chr6_mann_hap4	4049834	4049835	rs116189786	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	6p21.32	HLA-DRB1, HLA-DQA1	rs116189786-A	NR	5E-33		1.26	[1.22-1.3]	Affymetrix [9000000] (imputed)	N
615	chr6_mann_hap4	4049847	4049848	rs9271737	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p21.32	HLA-DQA1	rs9271737-C	0.503238	2E-34		0.036497757	[0.031-0.042] unit increase	Affymetrix [93095623] (imputed)	N
615	chr6_mann_hap4	4050185	4050186	rs9271762	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs9271762-G	0.304	9E-18	(Complement C4, C4A.C4B.4481.34.2)	0.25	[0.19-0.31] unit increase	Affymetrix [10572788] (imputed)	N
615	chr6_mann_hap4	4050196	4050197	rs28383323	34454985	Sliz E	2021-08-26	J Allergy Clin Immunol	Uniting biobank resources reveals novel genetic pathways modulating susceptibility for atopic dermatitis.	Atopic dermatitis	22,474 European ancestry cases, 774,187 European ancestry controls	NA	6p21.32	NR	rs28383323-a	0.2381	1E-13		0.89	[0.86-0.92]	Affymetrix, Illumina [16201029] (imputed)	N
615	chr6_mann_hap4	4050260	4050261	rs34518860	32276964	Shete S	2020-04-10	Cancer Res	A genome-wide association study identifies two novel susceptible regions for squamous cell carcinoma of the head and neck.	Oropharynx cancer	1,144 European ancestry cases, 4,493 European ancestry controls	2,328 European ancestry cases, 3,232 European ancestry controls	6p21.32	HLA-DQA1	rs34518860-G	0.89	3E-17		1.6393442	[1.47-1.85]	Illumina [7858089] (imputed)	N
615	chr6_mann_hap4	4050312	4050313	rs532322163	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Rheumatoid arthritis	5,348 East Asian ancestry cases, 173,268 East Asian ancestry controls	NA	6p21.32		rs532322163-T	0.133495442	2E-152		0.8641147	[0.8-0.93] unit increase	Illumina [13429970] (imputed)	N
615	chr6_mann_hap4	4050345	4050346	rs9271768	33766948	Zhu Z	2021-03-25	Eur Respir J	A large-scale genome-wide association analysis of lung function in the Chinese population identifies novel loci and highlights shared genetic etiology with obesity.	Lung function (FEV1)	100,285 Chinese ancestry individuals	NA	6p21.32		rs9271768-A	0.61	4E-12		0.032	L increase	Affymetrix [NR] (imputed)	N
615	chr6_mann_hap4	4050405	4050406	rs9271770	31089142	Law PJ	2019-05-14	Nat Commun	Association analyses identify 31 new risk loci for colorectal cancer susceptibility.	Colorectal cancer	31,197 European ancestry cases, 61,770 European ancestry controls	NA	6p21.32	NR	rs9271770-A	0.81	4E-8		1.08	[1.05-1.11]	Affymetrix, Illumina [> 10000000] (imputed)	N
615	chr6_mann_hap4	4050432	4050433	rs9271772	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Naive CD4+ T cell Absolute Count	3,395 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9271772-A	0.75528	3E-13		0.2514	[0.18-0.32] unit increase	Illumina [18332267] (imputed)	N
615	chr6_mann_hap4	4050432	4050433	rs9271772	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD127 on CD45RA+ CD4+ T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9271772-A	0.75569	2E-13		0.2608	[0.19-0.33] unit increase	Illumina [17954496] (imputed)	N
615	chr6_mann_hap4	4050466	4050467	rs9271774	28566273	Scott RA	2017-05-31	Diabetes	An Expanded Genome-Wide Association Study of Type 2 Diabetes in Europeans.	Type 2 diabetes	up to 26,676 European ancestry cases, up to 132,532 European ancestry controls	14,545 European ancestry cases, 38,994 European ancestry controls	6p21.32	HLA-DQA1	rs9271774-C	0.74	1E-9		1.09	[1.06-1.12]	Affymetrix, Illumina [at least 11579618] (imputed)	N
615	chr6_mann_hap4	4050541	4050542	rs114741460	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	6p21.32		rs114741460-C	0.953428	2E-13		0.0731865	[0.054-0.093] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4050541	4050542	rs114741460	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	6p21.32		rs114741460-C	0.953428	3E-8		0.051812	[0.034-0.07] unit increase	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4050541	4050542	rs114741460	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in IDL	115,082 European ancestry individuals	NA	6p21.32		rs114741460-C	0.953428	6E-14		0.0768716	[0.057-0.097] unit increase	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4050541	4050542	rs114741460	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	6p21.32		rs114741460-C	0.953428	4E-13		0.0724454	[0.053-0.092] unit increase	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4050541	4050542	rs114741460	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	6p21.32		rs114741460-C	0.953428	1E-14		0.078791	[0.059-0.099] unit increase	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4050762	4050762	rs9281962	33143745	Andlauer TFM	2020-11-04	BMC Med	Treatment- and population-specific genetic risk factors for anti-drug antibodies against interferon-beta: a GWAS.	Binding antibody response to interferon beta therapy in multiple sclerosis (antibody levels; IFN?-1a subcutaneous)	up to 2,000 German and Swedish ancestry individuals	up to 757 German and Swedish ancestry individuals	6p21.32		rs9281962-T	0.44	5E-32		0.5091026	[0.42-0.59] unit increase	Illumina [8550834] (imputed)	N
615	chr6_mann_hap4	4050820	4050821	rs116352702	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs116352702-A	0.954	8E-18	(conditional)	0.543	[0.4-0.68]	Illumina [11270530] (imputed)	N
615	chr6_mann_hap4	4051259	4051260	rs3104389	32769997	Zhou W	2020-08-07	Nat Commun	GWAS of thyroid stimulating hormone highlights pleiotropic effects and inverse association with thyroid cancer.	Thyroid stimulating hormone levels	119,715 European ancestry individuals	NA	6p21.32	HLA-DRB1, HLA-DQA1	rs3104389-A	0.424293733420786	6E-12		0.0623	[0.045-0.08] SD increase	Illumina [22400000] (imputed)	N
615	chr6_mann_hap4	4051279	4051280	rs9271853	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C11orf87	5,363 Icelandic ancestry individuals	NA	6p21.32		rs9271853-T	0.3105	7E-12		0.135762	[0.097-0.175] unit decrease	Illumina [7506463] (imputed)	N
615	chr6_mann_hap4	4051385	4051386	rs9271858	23291585	Fakiola M	2013-01-06	Nat Genet	Common variants in the HLA-DRB1-HLA-DQA1 HLA class II region are associated with susceptibility to visceral leishmaniasis.	Leishmaniasis (visceral)	989 Indian ancestry cases, 1,089 Indian ancestry controls, 357 Brazilian ancestry cases, 1,613 Brazilian ancestry unaffected relatives	951 Indian ancestry cases, 990 Indian ancestry controls	6p21.32	HLA, HLA-DRB1, HLA-DQA1	rs9271858-G	0.39	3E-17		1.41	[1.30-1.52]	Illumina [521134]	N
615	chr6_mann_hap4	4051438	4051439	rs28362132	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CCL19	5,367 Icelandic ancestry individuals	NA	6p21.32		rs28362132-T	0.0511	8E-36		0.540362	[0.46-0.63] unit increase	Illumina [7506463] (imputed)	N
615	chr6_mann_hap4	4051760	4051761	rs9271880	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs9271880-C	NR	2E-10		0.0194381	[0.013-0.025] unit decrease	Affymetrix [319769] (imputed)	N
615	chr6_mann_hap4	4051760	4051761	rs9271880	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs9271880-C	NR	5E-10		0.0190783	[0.013-0.025] unit decrease	Affymetrix [319769] (imputed)	N
615	chr6_mann_hap4	4052704	4052705	rs9271925	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	6p21.32	HLA-DQA1	rs9271925-G	0.3014	3E-9		0.0266219	[0.018-0.035] unit decrease	Affymetrix [~ 2500000] (imputed)	N
615	chr6_mann_hap4	4052888	4052888	rs9281971	33143745	Andlauer TFM	2020-11-04	BMC Med	Treatment- and population-specific genetic risk factors for anti-drug antibodies against interferon-beta: a GWAS.	Neutralising antibody response to interferon beta therapy in multiple sclerosis (presence of antibodies; all treatment preparations)	up to 2,000 German and Swedish ancestry individuals	up to 757 German and Swedish ancestry individuals	6p21.32		rs9281971-TTTTTTT	0.36	2E-17		0.6	[-0.46--0.74] unit decrease	Illumina [8550834] (imputed)	N
615	chr6_mann_hap4	4052888	4052888	rs9281971	33143745	Andlauer TFM	2020-11-04	BMC Med	Treatment- and population-specific genetic risk factors for anti-drug antibodies against interferon-beta: a GWAS.	Neutralising antibody response to interferon beta therapy in multiple sclerosis (antibody titre; all treatment preparations)	up to 2,000 German and Swedish ancestry individuals	up to 757 German and Swedish ancestry individuals	6p21.32		rs9281971-TTTTTTT	NR	2E-17		0.16	[-0.12--0.2] unit decrease	Illumina [8550834] (imputed)	N
615	chr6_mann_hap4	4053183	4053184	rs3129769	26272072	Jiang X	2015-08-13	Rheumatology (Oxford)	An Immunochip-based interaction study of contrasting interaction effects with smoking in ACPA-positive versus ACPA-negative rheumatoid arthritis.	ACPA-positive rheumatoid arthritis (smoking interaction)	340 European ancestry never-smoker cases, 493 European ancestry ever-smoker cases, 746 European ancestry never-smoker controls, 994 European ancestry ever-smoker controls	187 European ancestry never-smoker cases, 421 European ancestry ever-smoker cases, 461 European ancestry never-smoker controls, 447 European ancestry ever-smoker controls	6p21.32	NR	rs3129769-?	NR	3E-11	(adjusted for HLA shared epitope)	1.724138	[1.33-2.44]	Illumina [133648] (imputed)	N
615	chr6_mann_hap4	4053249	4053250	rs13211653	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total esterified cholesterol levels	115,082 European ancestry individuals	NA	6p21.32		rs13211653-A	0.854201	3E-14		0.0430803	[0.032-0.054] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4053249	4053250	rs13211653	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol levels	115,082 European ancestry individuals	NA	6p21.32		rs13211653-A	0.854201	4E-15		0.0445562	[0.033-0.056] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4053249	4053250	rs13211653	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Sphingomyelin levels	115,006 European ancestry individuals	NA	6p21.32		rs13211653-A	0.854236	6E-9		0.0319032	[0.021-0.043] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4053256	4053257	rs9271947	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	6p21.32		rs9271947-T	NR	5E-12		0.0142	[0.01-0.018] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
615	chr6_mann_hap4	4053501	4053502	rs114798579	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	6p21.32	NR	rs114798579-?	NR	7E-19	(conditional)			Affymetrix [15688218] (imputed)	N
615	chr6_mann_hap4	4053595	4053596	rs140145058	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large LDL	115,082 European ancestry individuals	NA	6p21.32		rs140145058-A	0.864668	1E-15		0.0486929	[0.037-0.061] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4053595	4053596	rs140145058	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	LDL cholesterol levels	115,082 European ancestry individuals	NA	6p21.32		rs140145058-A	0.864668	7E-16		0.0494415	[0.037-0.061] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4053595	4053596	rs140145058	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large LDL	115,082 European ancestry individuals	NA	6p21.32		rs140145058-A	0.864668	1E-15		0.048909	[0.037-0.061] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4053595	4053596	rs140145058	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large LDL	115,082 European ancestry individuals	NA	6p21.32		rs140145058-A	0.864668	2E-15		0.0482138	[0.036-0.06] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4054188	4054189	rs146668528	29785011	Zhu Z	2018-05-21	Nat Genet	A genome-wide cross-trait analysis from UK Biobank highlights the shared genetic architecture of asthma and allergic diseases.	Allergic disease (asthma, hay fever or eczema)	25,685 European ancestry allergic diseases cases, 76,768 European ancestry controls	NA	6p21.32	HLA-DQA1	rs146668528-?	NR	5E-12		1.1904762	[1.12-1.25]	Affymetrix [74888535] (imputed)	N
615	chr6_mann_hap4	4054250	4054251	rs1281943	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs1281943-C	NR	2E-10		0.0328506	[0.023-0.043] unit increase	Affymetrix [321169] (imputed)	N
615	chr6_mann_hap4	4055221	4055222	rs9461780	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	6p21.32	HLA-DQA1	rs9461780-T	0.075286	3E-15		0.033892684	[0.025-0.042] unit increase	Affymetrix [93095623] (imputed)	N
615	chr6_mann_hap4	4055231	4055232	rs9272050	33794208	Bowden SJ	2021-04-01	Lancet Oncol	Genetic variation in cervical preinvasive and invasive disease: a genome-wide association study.	Cervical intraepithelial neoplasia grade 3 and invasive cervical cancer	764 European ancestry invasive cervical cancer cases, 4,005 European ancestry cervical intraepithelial neoplasia grade 3 cases, 145,545 European ancestry controls	NA	6p21.32	HLA-DQA1	rs9272050-?	NR	3E-28		1.27	[1.21-1.32]	Affymetrix [9600464] (imputed)	N
615	chr6_mann_hap4	4055231	4055232	rs9272050	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cervical cancer	6,563 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs9272050-G	NR	1E-39		1.267	NR	Affymetrix [7846216] (imputed)	N
615	chr6_mann_hap4	4055231	4055232	rs9272050	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p21.32	HLA-DRB1	rs9272050-G	0.38	1E-30		1.19	[1.17-1.21] unit increase	Illumina [at least 560000] (imputed)	N
615	chr6_mann_hap4	4055647	4055648	rs9272071	33143745	Andlauer TFM	2020-11-04	BMC Med	Treatment- and population-specific genetic risk factors for anti-drug antibodies against interferon-beta: a GWAS.	Binding antibody response to interferon beta therapy in multiple sclerosis (antibody levels; all treatment preparations)	up to 2,000 German and Swedish ancestry individuals	up to 757 German and Swedish ancestry individuals	6p21.32		rs9272071-C	0.32	5E-18		0.22615278	[-0.17--0.28] unit decrease	Illumina [8550834] (imputed)	N
615	chr6_mann_hap4	4055670	4055671	rs77559661	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	6p21.32		rs77559661-T	NR	4E-30		0.0301	[0.025-0.035] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
615	chr6_mann_hap4	4056153	4056154	rs9272105	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	6p21.32	NR	rs9272105-?	NR	5E-12				Affymetrix [~ 8270000] (imputed)	N
615	chr6_mann_hap4	4056153	4056154	rs9272105	22807686	Li S	2012-07-12	PLoS Genet	GWAS identifies novel susceptibility loci on 6p21.32 and 21q21.3 for hepatocellular carcinoma in chronic hepatitis B virus carriers.	Hepatocellular carcinoma	1,538 Han Chinese ancestry HBV-positive HCC cases, 1,465 Han Chinese ancestry chronic HBV carriers	4,431 Han Chinese ancestry HBV-positive HCC cases, 4,725 Han Chinese ancestry chronic HBV carriers	6p21.32	HLA-DRB1, HLA-DQA1	rs9272105-A	0.45	5E-22		1.28	[1.22-1.35]	NR [523663]	N
615	chr6_mann_hap4	4056153	4056154	rs9272105	21502966	Weber F	2011-04-19	Pharmacogenomics J	Single-nucleotide polymorphisms in HLA- and non-HLA genes associated with the development of antibodies to interferon-? therapy in multiple sclerosis patients.	Response to interferon beta therapy	178 European ancestry antibody-positive individuals, 184 European ancestry antibody-negative individuals	350 European ancestry antibody-positive individuals, 468 European ancestry antibody-negative individuals	6p21.32	HLA-DRB1, HLA-DQA1	rs9272105-A	0.44	4E-10		0.26	[NR] unit increase	Illumina [~ 317000]	N
615	chr6_mann_hap4	4056157	4056158	rs3104376	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	6p21.32	Intergenic	rs3104376-T	NR	2E-28		0.0514741	[0.042-0.061] unit increase	Illumina [13520550] (imputed)	N
615	chr6_mann_hap4	4056211	4056212	rs35242582	28029757	Merkel PA	2016-12-28	Arthritis Rheumatol	Identification of Functional and Expression Polymorphisms Associated With Risk for Antineutrophil Cytoplasmic Autoantibody-Associated Vasculitis.	Antineutrophil cytoplasmic antibody-associated vasculitis	1,015 European ancestry granulomatosis with polyangiitis cases, 206 European ancestry microscopic polyangiitis cases, 3,258 European ancestry controls.	541 European ancestry granulomatosis with polyangiitis cases, 30 European ancestry microscopic polyangiitis cases, 1,465 European ancestry controls.	6p21.32	HLA-DQA1	rs35242582-A	0.74	6E-23		1.6	1.46-1.76	Affymetrix [at least 333035] (imputed)	N
615	chr6_mann_hap4	4056529	4056530	rs3104373	27386562	Andlauer TF	2016-06-17	Sci Adv	Novel multiple sclerosis susceptibility loci implicated in epigenetic regulation.	Multiple sclerosis	4,888 German ancestry cases, 10,395 German ancestry controls	2,903 Sardinian ancestry cases, 3,323 Sardinian ancestry controls	6p21.32	HLA-DRB1	rs3104373-T		1E-234		2.9	[2.72-3.09]	Illumina [at least 8143088] (imputed)	N
615	chr6_mann_hap4	4056558	4056559	rs9272116	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Creatinine levels	110,051 European ancestry individuals	NA	6p21.32		rs9272116-T	0.506915	1E-15		0.0282801	[0.021-0.035] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4056739	4056740	rs13214992	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	6p21.32	intergenic	rs13214992-A	0.0562	3E-29		0.1055	[0.087-0.124] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
615	chr6_mann_hap4	4056825	4056826	rs9272131	30450575	Hojfeldt SG	2018-11-18	Br J Haematol	Genetic predisposition to PEG-asparaginase hypersensitivity in children treated according to NOPHO ALL2008.	PEG-asparaginase hypersensitivity without enzyme activity in childhood acute lymphoblastic leukaemia	59 European ancestry cases, 772 European ancestry controls	NA	6p21.32	HLA-DQA1, HLA-DQB1, HLA-DRB1	rs9272131-T	0.11	9E-6		3.01	[1.85-4.91]	Illumina [NR]	N
615	chr6_mann_hap4	4056957	4056958	rs9272143	28806749	Leo PJ	2017-08-14	PLoS Genet	Defining the genetic susceptibility to cervical neoplasia-A genome-wide association study.	Cervical cancer	2,866 European ancestry cases, 6,481 European ancestry controls	NA	6p21.32	HLA-DRB1	rs9272143-?	NR	5E-15		1.3513513	[NR]	Illumina [10863230] (imputed)	N
615	chr6_mann_hap4	4056957	4056958	rs9272143	23482656	Chen D	2013-03-12	J Natl Cancer Inst	Genome-wide association study of susceptibility loci for cervical cancer.	Cervical cancer	1,034 European ancestry cases, 3,948 European ancestry controls	1,140 European ancestry cases, 1,058 European ancestry controls	6p21.32	HLA-DRB1, HLA-DQA1	rs9272143-?	NR	3E-22		1.49	[1.37-1.61]	Illumina [632668]	N
615	chr6_mann_hap4	4057173	4057174	rs9272154	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p21.32	NR	rs9272154-?	NR	9E-12		0.0937	[0.067-0.121] unit increase	Illumina [at least 560000] (imputed)	N
615	chr6_mann_hap4	4057441	4057442	rs72848251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs72848251-G	0.805325	4E-21		0.0493811	[0.039-0.06] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4057441	4057442	rs72848251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Remnant cholesterol (non-HDL, non-LDL -cholesterol)	115,082 European ancestry individuals	NA	6p21.32		rs72848251-G	0.805325	8E-20		0.0484938	[0.038-0.059] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4057441	4057442	rs72848251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of apolipoprotein B to apolipoprotein A1 levels	115,082 European ancestry individuals	NA	6p21.32		rs72848251-G	0.805325	6E-19		0.0468108	[0.036-0.057] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4057441	4057442	rs72848251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs72848251-G	0.805325	1E-22		0.0513513	[0.041-0.062] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4057441	4057442	rs72848251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs72848251-G	0.805325	2E-21		0.0496998	[0.039-0.06] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4057441	4057442	rs72848251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very small VLDL particles	115,082 European ancestry individuals	NA	6p21.32		rs72848251-G	0.805325	2E-20		0.048766	[0.038-0.059] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4057441	4057442	rs72848251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large LDL particles	115,082 European ancestry individuals	NA	6p21.32		rs72848251-G	0.805325	2E-23		0.0532642	[0.043-0.064] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4057441	4057442	rs72848251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of LDL particles	115,082 European ancestry individuals	NA	6p21.32		rs72848251-G	0.805325	2E-22		0.0522239	[0.042-0.063] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4057441	4057442	rs72848251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in VLDL	115,082 European ancestry individuals	NA	6p21.32		rs72848251-G	0.805325	4E-26		0.0566218	[0.046-0.067] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4057441	4057442	rs72848251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs72848251-G	0.805325	1E-17		0.0444632	[0.034-0.055] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4057441	4057442	rs72848251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	6p21.32		rs72848251-G	0.805325	4E-24		0.0541049	[0.044-0.065] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4057441	4057442	rs72848251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein B levels	115,082 European ancestry individuals	NA	6p21.32		rs72848251-G	0.805325	4E-22		0.0517157	[0.041-0.062] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4057441	4057442	rs72848251	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	6p21.32	HLA-DQA1	rs72848251-G	0.804518	1E-38		0.0349134	[0.03-0.04] unit decrease	Affymetrix [NR] (imputed)	N
615	chr6_mann_hap4	4057960	4057961	rs147841808	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in IDL	115,082 European ancestry individuals	NA	6p21.32		rs147841808-C	0.867699	2E-14		0.0459272	[0.034-0.058] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4057960	4057961	rs147841808	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large LDL	115,082 European ancestry individuals	NA	6p21.32		rs147841808-C	0.867699	2E-15		0.0492534	[0.037-0.061] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4057960	4057961	rs147841808	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in IDL	115,082 European ancestry individuals	NA	6p21.32		rs147841808-C	0.867699	8E-17		0.0499703	[0.038-0.062] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4057960	4057961	rs147841808	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small LDL	115,082 European ancestry individuals	NA	6p21.32		rs147841808-C	0.867699	2E-13		0.0454527	[0.033-0.058] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4057960	4057961	rs147841808	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large LDL	115,082 European ancestry individuals	NA	6p21.32		rs147841808-C	0.867699	3E-14		0.0463596	[0.034-0.058] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4057960	4057961	rs147841808	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in LDL	115,082 European ancestry individuals	NA	6p21.32		rs147841808-C	0.867699	3E-14		0.0468543	[0.035-0.059] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4057960	4057961	rs147841808	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in IDL	115,082 European ancestry individuals	NA	6p21.32		rs147841808-C	0.867699	4E-14		0.0455951	[0.034-0.057] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4057960	4057961	rs147841808	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Clinical LDL cholesterol levels	115,082 European ancestry individuals	NA	6p21.32		rs147841808-C	0.867699	4E-16		0.0503325	[0.038-0.062] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4057960	4057961	rs147841808	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium VLDL	115,082 European ancestry individuals	NA	6p21.32		rs147841808-C	0.867699	7E-22		0.0592176	[0.047-0.071] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4057960	4057961	rs147841808	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in IDL	115,082 European ancestry individuals	NA	6p21.32		rs147841808-C	0.867699	2E-12		0.0422918	[0.031-0.054] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4057960	4057961	rs147841808	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in IDL	115,082 European ancestry individuals	NA	6p21.32		rs147841808-C	0.867699	5E-13		0.0434275	[0.032-0.055] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4058106	4058107	rs553685714	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	6p21.32	HLA-DQA1	rs553685714-G	0.00566900000000004	5E-30		0.24839339	[0.21-0.29] unit increase	Affymetrix [93095623] (imputed)	N
615	chr6_mann_hap4	4058106	4058107	rs553685714	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	6p21.32	HLA-DQA1	rs553685714-G	0.005664	1E-34		0.2682929	[0.23-0.31] unit decrease	Affymetrix [93095623] (imputed)	N
615	chr6_mann_hap4	4058292	4058293	rs3104371	34536413	Daya M	2021-09-15	J Allergy Clin Immunol	Multi-ethnic genome-wide and HLA association study of total serum IgE.	IgE levels	5,008 African American individuals, 12,908 European ancestry individuals, 3,985 Hispanic individuals	NA	6p21.32		rs3104371-G	0.17	4E-18				Affymetrix, Illumina [NR] (imputed)	N
615	chr6_mann_hap4	4058424	4058425	rs9272219	32792643	Romero-Hidalgo S	2020-08-13	Sci Rep	Native American ancestry significantly contributes to neuromyelitis optica susceptibility in the admixed Mexican population.	Neuromyelitis optica	164 Mexican cases, 1,208 Mexican controls	NA	6p21.32	HLA-DQA1	rs9272219-A	0.42	8E-10		2.48	[1.86-3.32]	Illumina [252805]	N
615	chr6_mann_hap4	4058424	4058425	rs9272219	19571809	Shi J	2009-07-01	Nature	Common variants on chromosome 6p22.1 are associated with schizophrenia.	Schizophrenia	2,681 European ancestry cases, 2,653 European ancestry controls, 1,286 African American cases, 973 African American controls	5,327 European ancestry cases, 16,424 European ancestry controls	6p21.32	HLA-DQA1	rs9272219-G	0.72	7E-8	(EA)	1.14	[NR]	Affymetrix [up to 843798]	N
615	chr6_mann_hap4	4058551	4058552	rs9272226	34212547	An J	2021-07-01	Allergy Asthma Immunol Res	Genome-Wide Association Study of Korean Asthmatics: A Comparison With UK Asthmatics.	Adult asthma	1,386 Korean ancestry cases, 5,205 Korean ancestry controls	NA	6p21.32		rs9272226-C	0.43	6E-7		1.27	[1.16-1.4]	Affymetrix [4922160] (imputed)	N
615	chr6_mann_hap4	4058637	4058638	rs3104369	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CXCL2;CXCL3	5,366 Icelandic ancestry individuals	NA	6p21.32		rs3104369-T	0.3681	6E-26		0.203573	[0.17-0.24] unit increase	Illumina [7506463] (imputed)	N
615	chr6_mann_hap4	4058637	4058638	rs3104369	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD45RA+ CD8+ T cell Absolute Count	3,395 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs3104369-C	0.7732	1E-9		0.1747	[0.12-0.23] unit increase	Illumina [18332267] (imputed)	N
615	chr6_mann_hap4	4058637	4058638	rs3104369	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs3104369-?	NR	1E-11				Affymetrix [~ 8270000] (imputed)	N
615	chr6_mann_hap4	4058637	4058638	rs3104369	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Adult onset asthma or type 2 diabetes	33,418 European ancestry asthma cases, 393,186 European ancestry asthma controls, 159,208 European ancestry diabetes cases and controls	NA	6p21.32	NR	rs3104369-?	NR	9E-15				Affymetrix [up to 8270000] (imputed)	N
615	chr6_mann_hap4	4058638	4058639	rs17205170	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	6p21.32	HLA-DQA1	rs17205170-?	NR	1E-44		0.0464	[0.041-0.052] unit increase	Affymetrix [5701386] (imputed)	N
615	chr6_mann_hap4	4058786	4058787	rs17205212	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	334,468 European ancestry, NR ancestry individuals	NA	6p21.32		rs17205212-?	NR	5E-8				Affymetrix [NR] (imputed)	N
615	chr6_mann_hap4	4058821	4058821	rs139299944	33204752	Butler-Laporte G	2020-09-24	Open Forum Infect Dis	Genetic Determinants of Antibody-Mediated Immune Responses to Infectious Diseases Agents: A Genome-Wide and HLA Association Study.	Human herpes virus 7 U14 antibody levels	8,528 White British ancestry individuals	NA	6p21.32	HLA-DQA1	rs139299944-C	0.658	4E-12		0.11	[0.079-0.141] unit increase	NR [25472218] (imputed)	N
615	chr6_mann_hap4	4058945	4058946	rs9272242	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4 on Effector Memory CD4+ T cell	2,912 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9272242-C	0.6302	4E-12		0.2215	[0.16-0.28] unit increase	Illumina [17945888] (imputed)	N
615	chr6_mann_hap4	4059027	4059028	rs9272245	33794208	Bowden SJ	2021-04-01	Lancet Oncol	Genetic variation in cervical preinvasive and invasive disease: a genome-wide association study.	Cervical intraepithelial neoplasia grade 3	4,005 European ancestry cases, 145,545 European ancestry controls	NA	6p21.32	HLA-DQA1	rs9272245-?	NR	5E-12		1.44	[1.30-1.60]	Affymetrix [9600464] (imputed)	N
615	chr6_mann_hap4	4059162	4059163	rs2040406	20453840	Sanna S	2010-05-09	Nat Genet	Variants within the immunoregulatory CBLB gene are associated with multiple sclerosis.	Multiple sclerosis	882 Sardinian cases, 872 Sardinian controls	1,775 Sardinian cases, 2,005 Sardinian controls	6p21.32	HLA-DQB1, HLA-DRB	rs2040406-G	0.26	1E-20		2.05	[NR]	Affymetrix [6607266] (imputed)	N
615	chr6_mann_hap4	4059332	4059333	rs28393315	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	6p21.32		rs28393315-A	0.739	9E-22				Affymetrix [10369434] (imputed)	N
615	chr6_mann_hap4	4059450	4059451	rs9272263	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DQA1	rs9272263-C	NR	2E-12		0.0278269	[0.02-0.036] unit decrease	Affymetrix [323858] (imputed)	N
615	chr6_mann_hap4	4059450	4059451	rs9272263	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	HLA-DQA1	rs9272263-A	NR	6E-10		0.0226602	[0.015-0.03] unit decrease	Affymetrix [127266] (imputed)	N
615	chr6_mann_hap4	4059450	4059451	rs9272263	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p21.32	HLA-DQA1	rs9272263-C	NR	2E-8		0.0221565	[0.014-0.03] unit decrease	Affymetrix [323858] (imputed)	N
615	chr6_mann_hap4	4059476	4059477	rs62404084	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antihistamines for systemic use)	13,984 European ancestry cases, 137,652 European ancestry controls, 10,163 East Asian ancestry cases, 168,563 East Asian ancestry controls	NA	6p21.32		rs62404084-T	NR	5E-11		0.0852	[0.06-0.11] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
615	chr6_mann_hap4	4059476	4059477	rs62404084	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6p21.32	NR	rs62404084-C	0.8069	1E-43		1.1116052	[1.1-1.13]	Affymetrix [15688218] (imputed)	N
615	chr6_mann_hap4	4059640	4059641	rs3104367	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Asthma	28,399 European ancestry cases, 128,843 European ancestry controls	NA	6p21.32	HLA-DRB5, HLA-DQA1	rs3104367-?	NR	1E-40		1.1467891	[1.12-1.17]	Illumina [13747813] (imputed)	N
615	chr6_mann_hap4	4059813	4059814	rs1391373	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs1391373-C	NR	2E-10		0.0185525	[0.013-0.024] unit decrease	Affymetrix [321016] (imputed)	N
615	chr6_mann_hap4	4059948	4059949	rs1391371	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (glucocorticoids)	17,352 European ancestry cases, 188,348 European ancestry controls, 13,102 East Asian ancestry cases, 165,624 East Asian ancestry controls	NA	6p21.32		rs1391371-T	NR	1E-37		0.1229	[0.1-0.14] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
615	chr6_mann_hap4	4059948	4059949	rs1391371	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (glucocorticoids)	17,352 European ancestry cases, 188,348 European ancestry controls	NA	6p21.32	HLA-DQA1	rs1391371-T	0.202145	2E-48		0.20412196	[0.18-0.23] unit increase	Affymetrix [7288503] (imputed)	N
615	chr6_mann_hap4	4059948	4059949	rs1391371	30643255	Kristjansson RP	2019-01-14	Nat Genet	A loss-of-function variant in ALOX15 protects against nasal polyps and chronic rhinosinusitis.	Nasal polyps	86 European ancestry whole-genome sequenced cases, 4,280 European ancestry cases, 13,941 European ancestry whole-genome sequenced controls, 700,740 European ancestry controls	NA	6p21.32	HLA-DQA1	rs1391371-T	0.195	7E-49		1.47	[1.39-1.54]	Affymetrix, Illumina [up to 37123566] (imputed)	N
615	chr6_mann_hap4	4059948	4059949	rs1391371	30643255	Kristjansson RP	2019-01-14	Nat Genet	A loss-of-function variant in ALOX15 protects against nasal polyps and chronic rhinosinusitis.	Chronic rhinosinusitis	251 European ancestry whole-genome sequenced cases, 5,357 European ancestry cases, 13,957 European ancestry whole-genome sequenced controls, 746,129 European ancestry controls	NA	6p21.32	HLA-DQA1	rs1391371-T	0.195	4E-15		1.22	(1.16-1.28)	Affymetrix, Illumina [up to 37123566] (imputed)	N
615	chr6_mann_hap4	4059975	4059976	rs3129774	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	6p21.32		rs3129774-C	0.559887	9E-21		0.0390299	[0.031-0.047] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4059975	4059976	rs3129774	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs3129774-C	0.55995	2E-20		0.0386367	[0.03-0.047] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4059975	4059976	rs3129774	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6p21.32		rs3129774-C	0.55995	2E-20		0.0377974	[0.03-0.046] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4059975	4059976	rs3129774	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6p21.32		rs3129774-C	0.55995	7E-20		0.0378012	[0.03-0.046] unit increase	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4059975	4059976	rs3129774	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	6p21.32		rs3129774-C	0.559887	2E-21		0.0397338	[0.032-0.048] unit increase	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4059975	4059976	rs3129774	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6p21.32		rs3129774-C	0.55995	1E-18		0.0363057	[0.028-0.044] unit increase	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4059975	4059976	rs3129774	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	6p21.32		rs3129774-C	0.559887	1E-16		0.0342504	[0.026-0.042] unit increase	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4059975	4059976	rs3129774	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs3129774-C	0.55995	8E-20		0.0387931	[0.03-0.047] unit increase	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4059975	4059976	rs3129774	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6p21.32		rs3129774-C	0.55995	1E-19		0.0366269	[0.029-0.045] unit increase	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4059975	4059976	rs3129774	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	6p21.32		rs3129774-C	0.559954	9E-20		0.0375502	[0.029-0.046] unit increase	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4059975	4059976	rs3129774	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	6p21.32		rs3129774-C	0.559887	6E-19		0.0366323	[0.029-0.045] unit increase	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4059975	4059976	rs3129774	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs3129774-C	0.55995	8E-21		0.0392074	[0.031-0.047] unit increase	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4059975	4059976	rs3129774	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6p21.32		rs3129774-C	0.55995	6E-20		0.0370631	[0.029-0.045] unit increase	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4059975	4059976	rs3129774	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	6p21.32		rs3129774-C	0.559954	3E-17		0.0356128	[0.027-0.044] unit increase	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4060086	4060087	rs9272309	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	6p21.32	NR	rs9272309-A	0.620099	1E-19		0.0128993	[0.01-0.016] unit increase	Affymetrix [16578495] (imputed)	N
615	chr6_mann_hap4	4060527	4060528	rs9272346	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	6p21.32	HLA-DQA1	rs9272346-A	0.61	2E-156				NR [> 9500000] (imputed)	N
615	chr6_mann_hap4	4060527	4060528	rs9272346	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (childhood onset)	9,433 British ancestry cases, 318,237 British ancestry controls	NA	6p21.32	NR	rs9272346-A	0.59	4E-37		1.13		Affymetrix [10894596] (imputed)	N
615	chr6_mann_hap4	4060527	4060528	rs9272346	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (age of onset)	37,846 British ancestry individuals	NA	6p21.32	NR	rs9272346-A	0.59	7E-8				Affymetrix [10894596] (imputed)	N
615	chr6_mann_hap4	4060527	4060528	rs9272346	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (adult onset)	21,564 British ancestry cases, 318,237 British ancestry controls	NA	6p21.32	NR	rs9272346-A	0.59	2E-47		1.13		Affymetrix [10894596] (imputed)	N
615	chr6_mann_hap4	4060527	4060528	rs9272346	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls, 2,149 African ancestry cases, 6,055 African ancestry controls, 1,239 Japanese ancestry cases, 3,976 Japanese ancestry controls, 606 Latino cases, 792 Latino controls	NA	6p21.32	HLA-DRB1, HLA-DQA1	rs9272346-A	0.56	6E-24		1.16	[1.12-1.19]	Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
615	chr6_mann_hap4	4060527	4060528	rs9272346	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls	NA	6p21.32	HLA-DRB1, HLA-DQA1	rs9272346-A	0.56	2E-28		0.15	[0.13-0.17] unit increase	Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
615	chr6_mann_hap4	4060527	4060528	rs9272346	27130862	Sarnowski C	2016-04-06	J Allergy Clin Immunol	Identification of a new locus at 16q12 associated with time to asthma onset.	Asthma (time to onset)	5,462 European ancestry cases, 8,424 European ancestry controls	NA	6p21.32	HLA-DQA1	rs9272346-A	0.59	2E-8		1.13	[1.08-1.17]	Illumina [2387926] (imputed)	N
615	chr6_mann_hap4	4060527	4060528	rs9272346	23181788	Lasky-Su J	2012-12-04	Clin Exp Allergy	HLA-DQ strikes again: genome-wide association study further confirms HLA-DQ in the diagnosis of asthma among adults.	Asthma	Up to 1,238 European ancestry cases, up to 2,617 European ancestry controls	Up to 1,837 European ancestry cases, up to 3,803 European ancestry controls, up to 2,806 cases, up to 2,150 controls, up to 603 Costa Rican ancestry cases and their parents	6p21.32	HLA-DQA1	rs9272346-?	NR	2E-8	(Adult)			Affymetrix [455089]	N
615	chr6_mann_hap4	4060527	4060528	rs9272346	18978792	Cooper JD	2008-11-02	Nat Genet	Meta-analysis of genome-wide association study data identifies additional type 1 diabetes risk loci.	Type 1 diabetes	3,561 European ancestry cases, 4,646 European ancestry controls	6,225 European ancestry cases, 6,946 European ancestry controls, 3,064 European ancestry trios from 2,828 families	6p21.32	HLA	rs9272346-G	NR	6E-129				Affymetrix [up to 335565]	N
615	chr6_mann_hap4	4060527	4060528	rs9272346	17554300	Wellcome Trust Case Control Consortium	2007-06-07	Nature	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Type 1 diabetes	1,963 European ancestry cases, 2,938 European ancestry controls	(see Todd 2007)	6p21.32	MHC	rs9272346-G	0.61	5E-134		5.49	[4.83-6.24]	Affymetrix [469557]	N
615	chr6_mann_hap4	4060809	4060810	rs9272371	32737300	Sallah N	2020-07-31	Nat Commun	Distinct genetic architectures and environmental factors associate with host response to the ?2-herpesvirus infections.	Anti-Epstein-Barr virus nuclear antigen (EBNA) IgG levels	4,365 Ugandan ancestry individuals	2,162  European ancestry individuals	6p21.32	HLA-DQA1	rs9272371-C	0.3	4E-44	(Ugandan)	0.36	[0.32-0.40] unit decrease	Illumina [14929118] (imputed)	N
615	chr6_mann_hap4	4060809	4060810	rs9272371	29868224	Sallah N	2017-11-27	Glob Health Epidemiol Genom	Whole-genome association study of antibody response to Epstein-Barr virus in an African population: a pilot.	Epstein-Barr virus immune response (multivariate analysis)	1,473 Ugandan ancestry individuals	NA	6p21.32	HLA-DQA1	rs9272371-C	0.305	6E-21		0.36	[0.27-0.44] unit decrease	Illumina [~ 17000000] (imputed)	N
615	chr6_mann_hap4	4060809	4060810	rs9272371	29868224	Sallah N	2017-11-27	Glob Health Epidemiol Genom	Whole-genome association study of antibody response to Epstein-Barr virus in an African population: a pilot.	Epstein Barr virus nuclear antigen 1 IgG seropositivity	1,201 Ugandan ancestry cases, 361 Ugandan ancestry controls	NA	6p21.32	HLA-DQA1	rs9272371-?	0.695	4E-10		1.12	[1.08-1.16]	Illumina [~ 17000000] (imputed)	N
615	chr6_mann_hap4	4060809	4060810	rs9272371	29868224	Sallah N	2017-11-27	Glob Health Epidemiol Genom	Whole-genome association study of antibody response to Epstein-Barr virus in an African population: a pilot.	Epstein Barr virus nuclear antigen 1 IgG levels	1,473 Ugandan ancestry individuals, 2,162 European ancestry individuals	NA	6p21.32	HLA-DQA1	rs9272371-C	0.305	3E-17	(AA)	0.36	[0.26-0.42] unit decrease	Illumina [up to 17000000] (imputed)	N
615	chr6_mann_hap4	4061660	4061661	rs9272451	33549134	Adolphe C	2021-02-06	Genome Med	Genetic and functional interaction network analysis reveals global enrichment of regulatory T cell genes influencing basal cell carcinoma susceptibility.	Basal cell carcinoma	17,416 European ancestry cases, 375,455 European ancestry controls	NA	6p21.32	HLA-DQA1	rs9272451-G	0.386296	4E-21		0.10671105	[0.085-0.129] unit decrease	Affymetrix [7260263] (imputed)	N
615	chr6_mann_hap4	4061667	4061668	rs2213287	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	6p21.32		rs2213287-?	NR	5E-9		0.00544481	[0.0036-0.0073] unit decrease	NR [NR]	N
615	chr6_mann_hap4	4062043	4062044	rs2187668	28008999	Ostrowski J	2016-12-23	Sci Rep	Genetic architecture differences between pediatric and adult-onset inflammatory bowel diseases in the Polish population.	Ulcerative colitis	269 Polish ancestry child cases, 259 Polish ancestry adult cases, 582 Polish ancestry controls	121 Polish ancestry child cases, 85 Polish ancestry adult cases, 352 Polish ancestry controls	6p21.32	HLA-DQA1	rs2187668-?		4E-6	(Adults)	2.21266	[1.54-3.12]	Illumina [2612357]	N
615	chr6_mann_hap4	4062043	4062044	rs2187668	28008999	Ostrowski J	2016-12-23	Sci Rep	Genetic architecture differences between pediatric and adult-onset inflammatory bowel diseases in the Polish population.	Inflammatory bowel disease	622 Polish ancestry child cases, 496 Polish ancestry adult cases, 582 Polish ancestry controls	192 Polish ancestry child cases, 185 Polish ancestry adult cases, 352 Polish ancestry controls	6p21.32	HLA-DQA1	rs2187668-?	NR	2E-7	(Adult)	1.9647566	[1.52-2.56]	Illumina [2612357]	N
615	chr6_mann_hap4	4062043	4062044	rs2187668	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Diastolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	6p21.32	BAT2, BAT5	rs2187668-T	0.126	4E-11		0.372	[0.26-0.48] mm Hg decrease	Affymetrix, Illumina, Perlegen [128272]	N
615	chr6_mann_hap4	4062043	4062044	rs2187668	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Diastolic blood pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	6p21.32	HLA-DQB1	rs2187668-T	0.1281	8E-6		0.0258	unit decrease	Illumina [242296]	N
615	chr6_mann_hap4	4062043	4062044	rs2187668	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p21.32	HLA-DQA1	rs2187668-A	0.359	5E-36		3.4	[2.24-5.17]	Illumina [118177]	N
615	chr6_mann_hap4	4062043	4062044	rs2187668	26525574	Westerlind H	2015-11-02	Gut	Dense genotyping of immune-related loci identifies HLA variants associated with increased risk of collagenous colitis.	Collagenous colitis	247 European ancestry cases, 3969 European ancestry controls	67 European ancestry cases, 330 European ancestry controls	6p21.32	HLA	rs2187668-?	0.126	2E-11		2.06	[1.67-2.55]	Illumina [110634]	N
615	chr6_mann_hap4	4062043	4062044	rs2187668	26316170	Demirci FY	2015-08-28	Arthritis Rheumatol	Identification of a New Susceptibility Locus for Systemic Lupus Erythematosus on Chromosome 12 in Individuals of European Ancestry.	Systemic lupus erythematosus	661 European ancestry cases, 487 European ancestry controls	4,467 European ancestry cases, 9,114 European ancestry controls	6p21.32	HLA-DQA1	rs2187668-?	NR	1E-9				Affymetrix [up to 700598]	N
615	chr6_mann_hap4	4062043	4062044	rs2187668	25827949	Kunz M	2015-05-04	Exp Dermatol	Genome-wide association study identifies new susceptibility loci for cutaneous lupus erythematosus.	Cutaneous lupus erythematosus	151 European ancestry cases, 1,288 European ancestry controls	219 European ancestry cases, 262 European ancestry controls	6p21.32	HLA-DQA1	rs2187668-T	0.107	4E-10		2.93	[2.18-3.95]	Affymetrix [906600]	N
615	chr6_mann_hap4	4062043	4062044	rs2187668	24768677	de Boer YS	2014-04-23	Gastroenterology	Genome-wide association study identifies variants associated with autoimmune hepatitis type 1.	Autoimmune hepatitis type-1	649 European ancestry cases, 13,436 European ancestry controls	451 European ancestry cases, 4,103 European ancestry controls	6p21.32	HLA-DQA1	rs2187668-?	0.15	2E-78		2.9	[2.60-3.40]	Illumina [254006]	N
615	chr6_mann_hap4	4062043	4062044	rs2187668	21408207	Chung SA	2011-03-03	PLoS Genet	Differential genetic associations for systemic lupus erythematosus based on anti-dsDNA autoantibody production.	Systemic lupus erythematosus	811 anti-dsDNA positive European ancestry cases, 906 anti-dsDNA negative European ancestry cases, 4,813 European ancestry controls	NA	6p21.32	HLA-DR3	rs2187668-A	0.12	6E-28	(anti-dsDNA +)	2.23	[1.94-2.57]	Illumina [421318] (imputed)	N
615	chr6_mann_hap4	4062043	4062044	rs2187668	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.32	HLA-DQA1	rs2187668-A	0.1297	8E-93		4.32	[NR]	Illumina [242824]	N
615	chr6_mann_hap4	4062043	4062044	rs2187668	20694011	Ferreira RC	2010-08-08	Nat Genet	Association of IFIH1 and other autoimmunity risk alleles with selective IgA deficiency.	Immunoglobulin A	430 European ancestry cases, 1,090 European ancestry controls	342 European ancestry cases, 886 European ancestry controls	6p21.32	HLA-DRB1	rs2187668-A	0.13	2E-33		2.53	[2.17-2.95]	Illumina [2057134] (imputed)	N
615	chr6_mann_hap4	4062043	4062044	rs2187668	20190752	Dubois PC	2010-02-28	Nat Genet	Multiple common variants for celiac disease influencing immune gene expression.	Celiac disease	4,533 European ancestry cases, 10,750 European ancestry controls	4,918 European ancestry cases, 5,684 European ancestry controls	6p21.32	HLA-DQB1, HLA-DQA1	rs2187668-A	0.26	1E-50		6.23	[5.95-6.52]	Illumina [292387]	N
615	chr6_mann_hap4	4062043	4062044	rs2187668	18204098	Hom G	2008-01-20	N Engl J Med	Association of systemic lupus erythematosus with C8orf13-BLK and ITGAM-ITGAX.	Systemic lupus erythematosus	1,311 European ancestry cases, 3,340 European ancestry controls	793 European ancestry cases, 857 European ancestry controls	6p21.32	HLA-DQA1	rs2187668-A	0.11	3E-21				Illumina [502033]	N
615	chr6_mann_hap4	4062043	4062044	rs2187668	17558408	van Heel DA	2007-06-10	Nat Genet	A genome-wide association study for celiac disease identifies risk variants in the region harboring IL2 and IL21.	Celiac disease	778 European ancestry cases, 1,422 European ancestry controls	991 European ancestry cases, 1,489 European ancestry controls	6p21.32	HLA-DQA1	rs2187668-A	0.14	1E-19		7.04	[6.08-8.15]	Illumina [310605]	N
615	chr6_mann_hap4	4062403	4062404	rs9272502	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Asthma	38,369 European ancestry cases, 411,131 European ancestry controls, 13,015 East Asian ancestry cases, 162,933 East Asian ancestry controls	NA	6p21.32		rs9272502-T	NR	2E-70		0.1424	[0.13-0.16] unit increase	Affymetrix, Illumina [25837673] (imputed)	N
615	chr6_mann_hap4	4062472	4062473	rs9272505	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	334,944 European ancestry, NR ancestry individuals	NA	6p21.32		rs9272505-?	NR	5E-8				Affymetrix [NR] (imputed)	N
615	chr6_mann_hap4	4062637	4062638	rs9272521	33893285	Guindo-Martinez M	2021-04-23	Nat Commun	The impact of non-additive genetic associations on age-related complex diseases.	Asthma	9,209 European ancestry cases, 47,428 European ancestry controls	NA	6p21.32		rs9272521-A	0.436944	6E-15		1.15		Affymetrix [15607971] (imputed)	N
615	chr6_mann_hap4	4062718	4062719	rs28680981	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.32		rs28680981-G	0.738	3E-67				Affymetrix [10369434] (imputed)	N
615	chr6_mann_hap4	4062778	4062779	rs9272532	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.32		rs9272532-C	0.77	2E-33				Affymetrix [10369434] (imputed)	N
615	chr6_mann_hap4	4062890	4062891	rs9272535	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	6p21.32	HLA-DQA1	rs9272535-A	0.2454	6E-30		0.04727792	[0.039-0.055] unit decrease	Affymetrix [~ 2500000] (imputed)	N
615	chr6_mann_hap4	4062890	4062891	rs9272535	21131588	Slager SL	2010-12-03	Blood	Genome-wide association study identifies a novel susceptibility locus at 6p21.3 among familial CLL.	Chronic lymphocytic leukemia	407 European ancestry cases, 296 European ancestry controls	252 European ancestry cases, 965 European ancestry controls	6p21.32	HLA-DQA1	rs9272535-A	0.27	9E-8		1.61	[1.35-1.92]	Affymetrix [827777]	N
615	chr6_mann_hap4	4063012	4063013	rs9272544	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	6p21.32	HLA-DQA1	rs9272544-A	0.4858	8E-11		0.02325084	[0.016-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
615	chr6_mann_hap4	4063019	4063020	rs9272545	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6p21.32	NR	rs9272545-T	0.6122	1E-8		1.0357327	[1.02-1.05]	Affymetrix [15688218] (imputed)	N
615	chr6_mann_hap4	4063019	4063020	rs9272545	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	6p21.32	NR	rs9272545-?	NR	7E-288	(conditional)			Affymetrix [15688218] (imputed)	N
615	chr6_mann_hap4	4063046	4063047	rs28383364	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	6p21.32	BTNL2, C6orf10, HCG23, HLA-DOB, HLA-DQA1, HLA-DQA2, HLA-DQB1, HLA-DQB2, HLA-DRA, HLA-DRB1, HLA-DRB5, HLA-DRB6, TAP2	rs28383364-A	0.802222	3E-17		1.0942891	[1.07-1.12]	Affymetrix [8274727] (imputed)	N
615	chr6_mann_hap4	4063075	4063076	rs9272546	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	6p21.32		rs9272546-T	0.341931	9E-18		0.0373707	[0.029-0.046] unit decrease	NR [11722792] (imputed)	N
615	chr6_mann_hap4	4063153	4063154	rs28802989	29036319	Qi H	2017-09-26	Hum Mol Genet	Discovery of susceptibility loci associated with tuberculosis in Han Chinese.	Tuberculosis	972 Chinese ancestry cases, 1,316 Gambian ancestry cases, 1,537 Chinese ancestry controls, 1,382 Gambian ancestry controls	NA	6p21.32	NR	rs28802989-?	NR	2E-6				Illumina [7333833] (imputed)	N
616	chr6_mann_hap4	4063308	4063309	rs9272566	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic glomerulonephritis	566 European ancestry cases, 475,255 European ancestry controls, 210 East Asian ancestry cases, 174,345 East Asian ancestry controls	NA	6p21.32		rs9272566-A	NR	3E-11		0.6694	[0.47-0.87] unit increase	Affymetrix, Illumina [25844108] (imputed)	N
616	chr6_mann_hap4	4063308	4063309	rs9272566	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.32		rs9272566-G	0.715	3E-45				Affymetrix [10369434] (imputed)	N
616	chr6_mann_hap4	4063372	4063373	rs28383378	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.32		rs28383378-C	0.653	3E-62				Affymetrix [10369434] (imputed)	N
616	chr6_mann_hap4	4063386	4063387	rs28383380	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.32		rs28383380-C	0.652	2E-29				Affymetrix [10369434] (imputed)	N
616	chr6_mann_hap4	4063503	4063504	rs35248896	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs35248896-T	NR	7E-13		0.0255337	[0.019-0.033] unit increase	Affymetrix [319769] (imputed)	N
616	chr6_mann_hap4	4063503	4063504	rs35248896	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs35248896-T	NR	2E-12		0.0251292	[0.018-0.032] unit increase	Affymetrix [319769] (imputed)	N
616	chr6_mann_hap4	4063503	4063504	rs35248896	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs35248896-T	NR	7E-12		0.0246503	[0.018-0.032] unit increase	Affymetrix [321169] (imputed)	N
616	chr6_mann_hap4	4063658	4063659	rs9272594	32141793	Garman L	2020-03-06	Ocul Immunol Inflamm	Genome-Wide Association Study of Ocular Sarcoidosis Confirms HLA Associations and Implicates Barrier Function and Autoimmunity in African Americans.	Ocular sarcoidosis	260 African American cases, 1,551 African American controls	NA	6p21.32	NR	rs9272594-C	NR	2E-6		1.612	[1.33-1.96]	Illumina [13976150] (imputed)	N
616	chr6_mann_hap4	4064091	4064092	rs9272624	34532061	Hodel F	2021-06-11	Virus Evol	Human genomics of the humoral immune response against polyomaviruses.	Human polyomavirus 6 VP1 antibody levels	5,094 European ancestry individuals	NA	6p21.32		rs9272624-?	NR	1E-13				Affymetrix [NR] (imputed)	N
616	chr6_mann_hap4	4064138	4064139	rs9272626	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	6p21.32		rs9272626-C	NR	7E-51		0.0361	[0.031-0.041] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
616	chr6_mann_hap4	4064346	4064347	rs117441922	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (immunosuppressants)	3,483 East Asian ancestry cases, 175,243 East Asian ancestry controls	NA	6p21.32		rs117441922-C	0.127734413	9E-73		0.7531444	[0.67-0.83] unit increase	Illumina [13134967] (imputed)	N
616	chr6_mann_hap4	4064855	4064856	rs4452681	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in LDL	115,082 European ancestry individuals	NA	6p21.32		rs4452681-C	0.85737	8E-16		0.0477326	[0.036-0.059] unit decrease	NR [11722792] (imputed)	N
616	chr6_mann_hap4	4064855	4064856	rs4452681	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	6p21.32		rs4452681-C	0.85737	4E-14		0.0448685	[0.033-0.057] unit decrease	NR [11722792] (imputed)	N
616	chr6_mann_hap4	4064855	4064856	rs4452681	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of IDL particles	115,082 European ancestry individuals	NA	6p21.32		rs4452681-C	0.85737	2E-15		0.0465836	[0.035-0.058] unit decrease	NR [11722792] (imputed)	N
616	chr6_mann_hap4	4064943	4064944	rs4455710	32041948	Sarin KY	2020-02-10	Nat Commun	Genome-wide meta-analysis identifies eight new susceptibility loci for cutaneous squamous cell carcinoma.	Cutaneous squamous cell carcinoma	19,149 European ancestry cases, 680,049 European ancestry controls	NA	6p21.32	HLA-DQA1	rs4455710-T	0.368	6E-21		0.14	[0.1-0.18] unit increase	NR [13607369] (imputed)	N
616	chr6_mann_hap4	4064943	4064944	rs4455710	26829030	Asgari MM	2016-01-29	J Invest Dermatol	Identification of Susceptibility Loci for Cutaneous Squamous Cell Carcinoma.	Squamous cell carcinoma	6,891 European ancestry cases, 54,566 European ancestry controls	810 European ancestry cases,  5,600 European ancestry controls	6p21.32	HLA-DQA1	rs4455710-T	0.38	2E-18		1.17	[1.13-1.21]	Affymetrix [9610468] (imputed)	N
616	chr6_mann_hap4	4065189	4065190	rs1129740	33909500	Moll M	2021-04-28	Am J Physiol Lung Cell Mol Physiol	A Systematic Analysis of Protein-altering Exonic Variants in Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease	up to 31,465 European ancestry cases, up to 203,688 European ancestry controls, up to 1,413 African ancestry cases, up to 6,080 African ancestry controls, up to 287 East Asian ancestry cases, up to 7,484 East Asian ancestry controls, up to 61 Hispanic cases, up to 613 Hispanic controls	NA	6p21.32	HLA-DQA1	rs1129740-A	0.59	1E-9		1.07	[1.04 -1.09]	Illumina [at least 109036]	N
616	chr6_mann_hap4	4065210	4065211	rs1071630	33328473	Ahluwalia TS	2020-12-16	Nat Commun	FUT2-ABO epistasis increases the risk of early childhood asthma and Streptococcus pneumoniae respiratory illnesses.	Childhood asthma with severe exacerbations	2,866 European ancestry cases,  65,415 European ancestry controls	NA	6p21.32	HLA-DQA1	rs1071630-C	NR	8E-14		1.25	[1.18-1.32]	Illumina [up to 525976] (imputed)	N
616	chr6_mann_hap4	4065276	4065277	rs1142323	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p21.32	HLA-DQA1	rs1142323-G		8E-51		0.036	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
616	chr6_mann_hap4	4065313	4065314	rs9272699	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	6p21.32		rs9272699-?	NR	2E-8		0.00587135	[0.0038-0.0079] unit increase	NR [NR]	N
616	chr6_mann_hap4	4065674	4065675	rs9272729	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	6p21.32	HLA-DQA1	rs9272729-G	NR	3E-13		0.221651	[0.16-0.28] unit increase	Illumina [at least 950000] (imputed)	N
616	chr6_mann_hap4	4065674	4065675	rs9272729	27333618	Sekula P	2016-02-04	Nephrol Dial Transplant	Genetic risk variants for membranous nephropathy: extension of and association with other chronic kidney disease aetiologies.	Membranous nephropathy	323 European ancestry cases, 345 European ancestry controls	137 European ancestry cases, 379 European ancestry controls	6p21.32	HLA-DQA1	rs9272729-A	0.20	2E-39		7.07	[5.28-9.47]	Illumina [8968426] (imputed)	N
616	chr6_mann_hap4	4065893	4065894	rs707951	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:0_[M+H]1+/Phosphatidylethanolamine_35:0_[M+H]1+/Phosphatidate_37:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	6p21.32		rs707951-T	NR	4E-10		0.0768107	[0.053-0.101] unit decrease	Affymetrix [87696910] (imputed)	N
616	chr6_mann_hap4	4066222	4066222	rs748519761	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	6p21.32		rs748519761-T	0.35406	4E-6		0.033083	[0.019-0.047] unit increase	Affymetrix [15580782] (imputed)	N
616	chr6_mann_hap4	4066333	4066334	rs9272775	33143745	Andlauer TFM	2020-11-04	BMC Med	Treatment- and population-specific genetic risk factors for anti-drug antibodies against interferon-beta: a GWAS.	Neutralising antibody response to interferon beta therapy in multiple sclerosis (antibody titre; IFN?-1b subcutaneous)	up to 2,000 German and Swedish ancestry individuals	up to 757 German and Swedish ancestry individuals	6p21.32		rs9272775-C	0.23	3E-24		0.41	[0.33-0.49] unit increase	Illumina [8550834] (imputed)	N
616	chr6_mann_hap4	4066333	4066334	rs9272775	33143745	Andlauer TFM	2020-11-04	BMC Med	Treatment- and population-specific genetic risk factors for anti-drug antibodies against interferon-beta: a GWAS.	Binding antibody response to interferon beta therapy in multiple sclerosis (antibody levels; IFN?-1b subcutaneous)	up to 2,000 German and Swedish ancestry individuals	up to 757 German and Swedish ancestry individuals	6p21.32		rs9272775-C	NR	2E-19		0.40715143	[0.32-0.5] unit increase	Illumina [8550834] (imputed)	N
616	chr6_mann_hap4	4066357	4066358	rs9272777	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	6p21.32	NR	rs9272777-T	0.410563	3E-15		0.0181515	[0.014-0.022] unit increase	Affymetrix [16583148] (imputed)	N
616	chr6_mann_hap4	4066425	4066426	rs9272780	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs9272780-A	NR	7E-11		0.0186986	[0.013-0.024] unit decrease	Affymetrix [321016] (imputed)	N
616	chr6_mann_hap4	4066425	4066426	rs9272780	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DQA1	rs9272780-A	NR	3E-14		0.0237876	[0.018-0.03] unit decrease	Affymetrix [323123] (imputed)	N
616	chr6_mann_hap4	4066425	4066426	rs9272780	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p21.32	HLA-DQA1	rs9272780-A	0.400343	1E-21		0.02813841	[0.022-0.034] unit increase	Affymetrix [93095623] (imputed)	N
616	chr6_mann_hap4	4066512	4066513	rs1048372	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	HLA-DQA1	rs1048372-C	0.609	5E-12	(Amelogenin, X isoform, AMELX.8578.45.3)	0.18	[0.12-0.24] unit increase	Affymetrix [10572788] (imputed)	N
616	chr6_mann_hap4	4066521	4066522	rs1048381	33204752	Butler-Laporte G	2020-09-24	Open Forum Infect Dis	Genetic Determinants of Antibody-Mediated Immune Responses to Infectious Diseases Agents: A Genome-Wide and HLA Association Study.	Varicella zoster virus glycoproteins E and I antibody levels	7,595 White British ancestry individuals	NA	6p21.32	HLA-DQA1	rs1048381-G		6E-25		0.22	[0.18-0.26] unit decrease	NR [25472218] (imputed)	N
616	chr6_mann_hap4	4066537	4066538	rs9260	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DQA1	rs9260-A	NR	8E-14		0.0290366	[0.021-0.037] unit increase	Affymetrix [323123] (imputed)	N
616	chr6_mann_hap4	4067173	4067174	rs28538060	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.32		rs28538060-G	0.858	1E-17				Affymetrix [10369434] (imputed)	N
616	chr6_mann_hap4	4067395	4067396	rs9272975	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs9272975-A	0.217	1E-55	(HLA class II histocompatibility antigen, DQ alpha 2 chain, HLA.DQA2.7757.5.3)	0.52	[0.46-0.58] unit decrease	Affymetrix [10572788] (imputed)	N
616	chr6_mann_hap4	4067492	4067493	rs9272989	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	6p21.32		rs9272989-C	0.30783	5E-6		0.033104	[0.019-0.047] unit increase	Affymetrix [15580782] (imputed)	N
616	chr6_mann_hap4	4067718	4067719	rs9273012	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs9273012-?	NR	3E-16				Affymetrix [~ 8270000] (imputed)	N
616	chr6_mann_hap4	4067771	4067772	rs4526236	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hepatic cancer	2,122 East Asian ancestry cases, 159,201 East Asian ancestry controls	NA	6p21.32		rs4526236-A	0.174389152	5E-9		0.24874051	[0.17-0.33] unit decrease	Illumina [13427386] (imputed)	N
616	chr6_mann_hap4	4068041	4068042	rs9273039	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	6p21.32	HLA-DQA1	rs9273039-T	0.2667	1E-25		0.04249746	[0.035-0.05] unit decrease	Affymetrix [~ 2500000] (imputed)	N
616	chr6_mann_hap4	4068250	4068251	rs9273062	29534301	Nishida N	2018-03-13	Hepatology	Key HLA-DRB1-DQB1 haplotypes and role of the BTNL2 gene for response to a hepatitis B vaccine.	Response to hepatitis B vaccine	107 Japanese ancestry low responder individuals, 351 Japanese ancestry intermediate responder individuals, 735 Japanese ancestry high responder individuals	NA	6p21.32	HLA-DQB1	rs9273062-?		2E-10		0.165	unit increase	Affymetrix [427664]	N
616	chr6_mann_hap4	4068390	4068391	rs9273076	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	NA	6p21.32	HLA-DQ1	rs9273076-T		8E-13	(conditional)	1.3	[NR]	Illumina [> 644674] (imputed)	N
616	chr6_mann_hap4	4068486	4068487	rs6927022	33204752	Butler-Laporte G	2020-09-24	Open Forum Infect Dis	Genetic Determinants of Antibody-Mediated Immune Responses to Infectious Diseases Agents: A Genome-Wide and HLA Association Study.	Epstein-Barr virus EBNA-1 antibody levels	7,972 White British ancestry individuals	NA	6p21.32	HLA-DQA1	rs6927022-A	0.505	2E-76		0.3	[0.27-0.33] unit increase	NR [25472218] (imputed)	N
616	chr6_mann_hap4	4068486	4068487	rs6927022	32737300	Sallah N	2020-07-31	Nat Commun	Distinct genetic architectures and environmental factors associate with host response to the ?2-herpesvirus infections.	Anti-Epstein-Barr virus nuclear antigen (EBNA) IgG levels	4,365 Ugandan ancestry individuals	2,162  European ancestry individuals	6p21.32	HLA-DRB1	rs6927022-A	0.73	1E-21	(Ugandan)	0.26	[0.22-0.30] unit increase	Illumina [14929118] (imputed)	N
616	chr6_mann_hap4	4068486	4068487	rs6927022	32737300	Sallah N	2020-07-31	Nat Commun	Distinct genetic architectures and environmental factors associate with host response to the ?2-herpesvirus infections.	Anti-Epstein-Barr virus nuclear antigen (EBNA) IgG levels	4,365 Ugandan ancestry individuals	2,162  European ancestry individuals	6p21.32	HLA-DRB1	rs6927022-A	0.59	7E-26	(EA)	0.16	[0.16-0.16] unit increase	Illumina [14929118] (imputed)	N
616	chr6_mann_hap4	4068486	4068487	rs6927022	29868224	Sallah N	2017-11-27	Glob Health Epidemiol Genom	Whole-genome association study of antibody response to Epstein-Barr virus in an African population: a pilot.	Epstein Barr virus nuclear antigen 1 IgG levels	1,473 Ugandan ancestry individuals, 2,162 European ancestry individuals	NA	6p21.32	HLA-DRB1	rs6927022-A	0.59	7E-26	(EA)	0.16	[0.13-0.19] unit increase	Illumina [up to 17000000] (imputed)	N
616	chr6_mann_hap4	4068486	4068487	rs6927022	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Ulcerative colitis	12,366 European and unknown ancestry cases, 33,609 European and unknown ancestry controls	NA	6p21.32	C6orf15, CDSN, PSORS1C2, HCG27, HLA-C, HLA-B, MCCD1, ATP6V1G2, LTA, TNF, LTB, NCR3, AIF1, BAG6, C6orf47, GPANK1, LY6G5B, LY6G5C, LY6G6F, MEGT1, LY6G6E, LY6G6D, DDAH2, SAPCD1, HSPA1L, HSPA1B, C6orf48, NEU1, ZBTB12, NELFE, DXO, AL645922.1, CYP21A2, FKBPL, PRRT1, EGFL8, RNF5, AGER, PBX2, HLA-DRA, HLA-DQB1, HLA-DQA2, HLA-DQB2, PSORS1C1, CCHCR1, TCF19, POU5F1, MICA, MICB, DDX39B, ATP6V1G2-DDX39B, NFKBIL1, LST1, PRRC2A, APOM, CSNK2B, CSNK2B-LY6G5B-1181, ABHD16A, XXbac-BPG32J3.20, C6orf25, LY6G6C, CLIC1, VWA7, VARS, LSM2, HSPA1A, SLC44A4, C2, CFB, SKIV2L, STK19, C4A, C4B, TNXB, ATF6B, PPT2, PPT2-EGFL8, AGPAT1, GPSM3, NOTCH4, C6orf10, HLA-DRB5, HLA-DRB1, HLA-DQA1, MSH5, MSH5-SAPCD1, EHMT2, BTNL2	rs6927022-?		5E-65				Illumina [9578670] (imputed)	N
616	chr6_mann_hap4	4068486	4068487	rs6927022	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	6p21.32	C6orf15, CDSN, PSORS1C2, HCG27, HLA-C, HLA-B, MCCD1, ATP6V1G2, LTA, TNF, LTB, NCR3, AIF1, BAG6, C6orf47, GPANK1, LY6G5B, LY6G5C, LY6G6F, MEGT1, LY6G6E, LY6G6D, DDAH2, SAPCD1, HSPA1L, HSPA1B, C6orf48, NEU1, ZBTB12, NELFE, DXO, AL645922.1, CYP21A2, FKBPL, PRRT1, EGFL8, RNF5, AGER, PBX2, HLA-DRA, HLA-DQB1, HLA-DQA2, HLA-DQB2, PSORS1C1, CCHCR1, TCF19, POU5F1, MICA, MICB, DDX39B, ATP6V1G2-DDX39B, NFKBIL1, LST1, PRRC2A, APOM, CSNK2B, CSNK2B-LY6G5B-1181, ABHD16A, XXbac-BPG32J3.20, C6orf25, LY6G6C, CLIC1, VWA7, VARS, LSM2, HSPA1A, SLC44A4, C2, CFB, SKIV2L, STK19, C4A, C4B, TNXB, ATF6B, PPT2, PPT2-EGFL8, AGPAT1, GPSM3, NOTCH4, C6orf10, HLA-DRB5, HLA-DRB1, HLA-DQA1, MSH5, MSH5-SAPCD1, EHMT2, BTNL2	rs6927022-?		2E-31				Illumina [9725440] (imputed)	N
616	chr6_mann_hap4	4068486	4068487	rs6927022	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Ulcerative colitis	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls	6p21.32	HLA-DQB1, HLA-DRA, HLA-DRB1, HLA-DQA1	rs6927022-A	0.535	5E-133		1.444	[1.387-1.503]	Affymetrix, Illumina [1230000] (imputed)	N
616	chr6_mann_hap4	4068519	4068520	rs6926894	31959851	Olafsdottir TA	2020-01-20	Nat Commun	Eighty-eight variants highlight the role of T cell regulation and airway remodeling in asthma pathogenesis.	Asthma	16,247 European ancestry cases, 346,486 European ancestry controls, 52,942 cases, 355,713 controls	NA	6p21.32	HLA-DQA1, HLA-DQB1, HLA-DRB1, HLA-DRB6, HLA-DQA2, MIR3135B	rs6926894-C	0.59076	2E-126		1.16642	[1.15-1.18]	Affymetrix [32463443] (imputed)	N
616	chr6_mann_hap4	4068519	4068520	rs6926894	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	6p21.32	HLA-DQA1, HLA-DQB1	rs6926894-T	0.4094	2E-100				Affymetrix [15688218] (imputed)	N
616	chr6_mann_hap4	4068551	4068552	rs200930495	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs200930495-A	0.148	5E-31	(Complement C4, C4A.C4B.4481.34.2)	0.45	[0.37-0.53] unit increase	Affymetrix [10572788] (imputed)	N
616	chr6_mann_hap4	4068745	4068746	rs9273113	32141793	Garman L	2020-03-06	Ocul Immunol Inflamm	Genome-Wide Association Study of Ocular Sarcoidosis Confirms HLA Associations and Implicates Barrier Function and Autoimmunity in African Americans.	Ocular sarcoidosis	260 African American cases, 1,551 African American controls	NA	6p21.32	NR	rs9273113-A	NR	6E-6		1.57	[1.29-1.91]	Illumina [13976150] (imputed)	N
616	chr6_mann_hap4	4068823	4068824	rs9273123	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	6p21.32	HLA-DQA1	rs9273123-A	NR	4E-105		1.187	[1.17-1.2]	Affymetrix [9000000] (imputed)	N
616	chr6_mann_hap4	4069388	4069389	rs9273177	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.32	HLA-DQA1, HLA-DQB1	rs9273177-?		1E-13		1.1363636	[1.1-1.16]	Affymetrix, Illumina [NR]	N
616	chr6_mann_hap4	4078943	4078944	rs9273349	20860503	Moffatt MF	2010-09-23	N Engl J Med	A large-scale, consortium-based genomewide association study of asthma.	Asthma	10,365 cases, 16,110 controls	NA	6p21.32	HLA-DQ	rs9273349-C	0.58	7E-14		1.18	[1.13-1.24]	Illumina [582892]	N
616	chr6_mann_hap4	4079041	4079042	rs2858856	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	HLA-DQB1	rs2858856-A	NR	4E-9		0.0185689	[0.012-0.025] unit increase	Affymetrix [321114] (imputed)	N
616	chr6_mann_hap4	4079089	4079090	rs6905282	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (multivariate analysis)	477,968 European ancestry individuals	NA	6p21.32	HLA, DQA1, DQB1	rs6905282-A	0.466	5E-28		0.05	[0.04-0.06] unit decrease	NR [NR] (imputed)	N
616	chr6_mann_hap4	4079089	4079090	rs6905282	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (age of onset)	117,130 European ancestry individuals	NA	6p21.32	HLA-DQA1, HLA-DQB1	rs6905282-A	0.466	1E-23		0.042	[0.034-0.05] unit decrease	NR [7647814] (imputed)	N
616	chr6_mann_hap4	4079114	4079115	rs4713570	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Malignant lymphoma	3,546 European ancestry cases, 487,257 European ancestry controls, 335 East Asian ancestry cases, 177,342 East Asian ancestry controls	NA	6p21.32		rs4713570-T	NR	1E-16		0.2256	[0.17-0.28] unit increase	Affymetrix, Illumina [25845276] (imputed)	N
616	chr6_mann_hap4	4079204	4079205	rs7744020	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic rhinitis	18,915 European ancestry cases, 239,773 European ancestry controls	NA	6p21.32	HLA-DQB1	rs7744020-A	0.3071	4E-25		1.131	[1.106-1.157]	Affymetrix [15688218] (imputed)	N
616	chr6_mann_hap4	4079204	4079205	rs7744020	24204295	Han F	2013-10-31	PLoS Genet	Genome wide analysis of narcolepsy in China implicates novel immune loci and reveals changes in association prior to versus after the 2009 H1N1 influenza pandemic.	Narcolepsy (age of onset)	at least 1,000 Chinese ancestry cases	NA	6p21.32	NR	rs7744020-A	0.272	8E-9		1.9	year decrease	Affymetrix [603382]	N
616	chr6_mann_hap4	4079279	4079280	rs6905837	32390946	Liu L	2020-04-22	Front Endocrinol (Lausanne)	Twelve New Genomic Loci Associated With Bone Mineral Density.	Total body bone mineral density (MTAG)	66,628 individuals	NA	6p21.32	NR	rs6905837-C	0.95	3E-6		0.05	[0.03-0.07] unit decrease	Affymetrix, Illumina [7369691] (imputed)	N
616	chr6_mann_hap4	4079279	4079280	rs6905837	32390946	Liu L	2020-04-22	Front Endocrinol (Lausanne)	Twelve New Genomic Loci Associated With Bone Mineral Density.	Heel bone mineral density (MTAG)	426,824 individuals	NA	6p21.32	NR	rs6905837-C	0.95	3E-8		0.03	[0.018-0.042] unit decrease	NR [7369691] (imputed)	N
616	chr6_mann_hap4	4079323	4079324	rs6928482	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals, at least 88,461 European ancestry individuals	NA	6p21.32	HLA-DQB1	rs6928482-T	0.542	1E-6	(EA)	0.018571429	[0.011-0.026] unit increase	Illumina [1986983] (imputed)	N
616	chr6_mann_hap4	4079346	4079347	rs9273363	30659077	Onengut-Gumuscu S	2019-01-18	Diabetes Care	Type 1 Diabetes Risk in African-Ancestry Participants and Utility of an Ancestry-Specific Genetic Risk Score.	Type 1 diabetes	1,021 African American cases, 2,928 African American controls	NA	6p21.32	MHC	rs9273363-A	0.13	5E-138		5.48	[4.80-6.27]	Illumina [114874]	N
616	chr6_mann_hap4	4079346	4079347	rs9273363	23770605	Berndt SI	2013-06-16	Nat Genet	Genome-wide association study identifies multiple risk loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	2,179 European ancestry cases, 6,221 European ancestry controls	1,709 European ancestry cases, 6,318 European ancestry controls	6p21.32	HLA	rs9273363-A	0.27	2E-10		1.24	[NR]	Illumina [549934]	N
616	chr6_mann_hap4	4079376	4079377	rs9273364	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Carpal tunnel syndrome	18,855 European ancestry cases, 461,346 European ancestry controls, 192 East Asian ancestry cases, 178,534 East Asian ancestry controls	NA	6p21.32		rs9273364-G	NR	1E-8		0.0702	[0.046-0.094] unit increase	Affymetrix, Illumina [25844227] (imputed)	N
616	chr6_mann_hap4	4079376	4079377	rs9273364	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 29,0641 European ancestry controls	NA	6p21.32	HLA-DQB1	rs9273364-G	0.302909	3E-75		0.23193699	[0.21-0.26] unit increase	Affymetrix [7288503] (imputed)	N
616	chr6_mann_hap4	4079385	4079386	rs6906021	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Angiopoietin-1 receptor levels	21,758 European ancestry individuals	9,173 individuals	6p21.32		rs6906021-T	0.56	8E-14		0.0626	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
616	chr6_mann_hap4	4079385	4079386	rs6906021	23817571	Bonnelykke K	2013-06-30	Nat Genet	Meta-analysis of genome-wide association studies identifies ten loci influencing allergic sensitization.	Allergic sensitization	5,789 European ancestry cases, 10,056 European ancestry controls	6,114 European ancestry cases, 9,920 European ancestry controls	6p21.32	HLA-DQB1, HLA-DQA1	rs6906021-C	0.45	2E-12		1.15	[1.11-1.2]	Affymetrix, Illumina [~ 2500000] (imputed)	N
616	chr6_mann_hap4	4079385	4079386	rs6906021	23817569	Hinds DA	2013-06-30	Nat Genet	A genome-wide association meta-analysis of self-reported allergy identifies shared and allergy-specific susceptibility loci.	Self-reported allergy	53,862 European ancestry individuals	NA	6p21.32	HLA-DQB1, HLA-DQA1	rs6906021-C	0.4749	7E-15		0.0945	[0.071-0.118] unit increase	Illumina [2400000] (imputed)	N
616	chr6_mann_hap4	4079422	4079423	rs28407950	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6p21.32	NR	rs28407950-C	0.7564	7E-45		1.1032656	[1.09-1.12]	Affymetrix [15688218] (imputed)	N
616	chr6_mann_hap4	4079422	4079423	rs28407950	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic disease (asthma, hay fever or eczema)	106,772 European ancestry cases, 239,773 European ancestry controls	83,335 cases, 34,934 controls	6p21.32	NR	rs28407950-C	0.7564	7E-70		1.1201972	[1.11-1.13]	Affymetrix [15688218] (imputed)	N
616	chr6_mann_hap4	4079422	4079423	rs28407950	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (childhood onset)	9,433 British ancestry cases, 318,237 British ancestry controls	NA	6p21.32	HLA-DQA1, HLA-DQB	rs28407950-C	0.756	1E-59		1.354	[1.306-1.405]	Affymetrix [10894596] (imputed)	N
616	chr6_mann_hap4	4079422	4079423	rs28407950	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (adult onset)	21,564 British ancestry cases, 318,237 British ancestry controls	NA	6p21.32	HLA-DQA1, HLA-DQB	rs28407950-C	0.756	8E-31		1.148	[1.121-1.175]	Affymetrix [10894596] (imputed)	N
616	chr6_mann_hap4	4079422	4079423	rs28407950	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (antihistamines for systemic use)	13,984 European ancestry cases, 137,652 European ancestry controls	NA	6p21.32	HLA-DQB1	rs28407950-T	0.243266	1E-10		0.094664484	[0.066-0.123] unit decrease	Affymetrix [7288503] (imputed)	N
616	chr6_mann_hap4	4079477	4079478	rs34004019	30013184	Waage J	2018-07-16	Nat Genet	Genome-wide association and HLA fine-mapping studies identify risk loci and genetic pathways underlying allergic rhinitis.	Allergic rhinitis	59,762 European and unknown ancestry cases, 152,358 European and unknown ancestry controls	60,720 European ancestry cases, 618,527 European ancestry controls	6p21.32	HLA-DQB1, HLA-DQA1	rs34004019-A	0.7331	1E-30		1.1235955	[1.11-1.15]	Affymetrix, Illumina, Perlegen [16531985] (imputed)	N
616	chr6_mann_hap4	4079477	4079478	rs34004019	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	6p21.32	HLA-DQA1, HLA-DQB1	rs34004019-A	0.7	4E-52		1.101	[1.09-1.11]	Affymetrix, Illumina [8307659] (imputed)	N
616	chr6_mann_hap4	4079477	4079478	rs34004019	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Allergy	66,973 European ancestry cases, 113,768 European ancestry controls	NA	6p21.32	HLA-DQB1, HLA-DQA1	rs34004019-?	NR	3E-24		1.1086475	[1.09-1.13]	Illumina [12845910] (imputed)	N
616	chr6_mann_hap4	4079512	4079513	rs9273367	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 1 diabetes	6,447 European ancestry cases, 451,248 European ancestry controls, 1,219 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	6p21.32		rs9273367-T	NR	6E-306		0.7272	[0.69-0.77] unit increase	Affymetrix, Illumina [25837106] (imputed)	N
616	chr6_mann_hap4	4079525	4079526	rs28414666	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	6p21.32		rs28414666-A	0.134651377	2E-27		0.1486309	[0.12-0.18] unit increase	Illumina [13429980] (imputed)	N
616	chr6_mann_hap4	4079549	4079550	rs9273368	34737425	Mansour Aly D	2021-11-04	Nat Genet	Genome-wide association analyses highlight etiological differences underlying newly defined subtypes of diabetes.	Severe autoimmune type 2 diabetes	452 Scandinavian ancestry cases, 2,744 Scandinavian ancestry controls	NA	6p21.32	HLA-DQA1, HLA-DQB1	rs9273368-A	0.350323	7E-40		2.678	[2.314 - 3.1]	Illumina [5396854] (imputed)	N
616	chr6_mann_hap4	4079549	4079550	rs9273368	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	6p21.32		rs9273368-A	NR	2E-49		0.1157	[0.1-0.13] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
616	chr6_mann_hap4	4079549	4079550	rs9273368	30254083	Cousminer DL	2018-09-25	Diabetes Care	First Genome-Wide Association Study of Latent Autoimmune Diabetes in Adults Reveals Novel Insights Linking Immune and Metabolic Diabetes.	Latent autoimmune diabetes vs. type 2 diabetes	2,779 European ancestry latent autoimmune diabetes cases, 10,396 European ancestry type 2 diabetes cases	NA	6p21.32	HLA-DQB1	rs9273368-?	0.301	3E-78		2.439	[2.222-2.676]	Affymetrix, Illumina [8328843] (imputed)	N
616	chr6_mann_hap4	4079549	4079550	rs9273368	30254083	Cousminer DL	2018-09-25	Diabetes Care	First Genome-Wide Association Study of Latent Autoimmune Diabetes in Adults Reveals Novel Insights Linking Immune and Metabolic Diabetes.	Latent autoimmune diabetes vs. type 1 diabetes	2,454 European ancestry latent autoimmune diabetes cases, 968 European ancestry type 1 diabetes cases	NA	6p21.32	HLA-DQB1	rs9273368-G	0.35	8E-40		2.99	[2.60-3.91]	Affymetrix, Illumina [8465706] (imputed)	N
616	chr6_mann_hap4	4079566	4079567	rs9273370	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Hypothyroidism	17,558 European ancestry cases, 117,083 European ancestry controls	NA	6p21.32	HLA-DQA1, HLA-DQB1	rs9273370-?	NR	5E-34		1.1737089	[1.14-1.20]	Illumina [13676411] (imputed)	N
616	chr6_mann_hap4	4079648	4079649	rs28539606	33731350	Nandakumar P	2021-03-17	Sci Adv	Nuclear genome-wide associations with mitochondrial heteroplasmy.	Mitochondrial heteroplasmy measurement	982,072 European ancestry individuals	NA	6p21.32	HLA-DQB1	rs28539606-G	0.147	4E-23		0.02	[0.016-0.024] unit increase	NR [57525634] (imputed)	N
616	chr6_mann_hap4	4079673	4079674	rs9273373	24388013	Ferreira MA	2013-12-30	J Allergy Clin Immunol	Genome-wide association analysis identifies 11 risk variants associated with the asthma with hay fever phenotype.	Asthma and hay fever	6,685 European ancestry cases, 14,091 European ancestry controls	878 European ancestry cases, 2,455 European ancestry controls	6p21.32	HLA-DQB1	rs9273373-G	0.54	4E-14		1.24	[1.17-1.30]	Illumina [up to 4972397] (imputed)	N
616	chr6_mann_hap4	4079686	4079687	rs9273374	29785011	Zhu Z	2018-05-21	Nat Genet	A genome-wide cross-trait analysis from UK Biobank highlights the shared genetic architecture of asthma and allergic diseases.	Asthma or allergic disease (pleiotropy)	14,085 European asthma cases, 25,685 European ancestry allergic diseases cases, 76,768 European ancestry controls	NA	6p21.32	HLA-DOB, HLA-DQA1, HLA-DQA2, HLA-DQB1, HLA-DQB2, HLA-DRB1, HLA-DRB6, TAP2	rs9273374-?	NR	8E-35		1.1904762		NR [74888535] (imputed)	N
616	chr6_mann_hap4	4079811	4079812	rs12055445	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQB1	rs12055445-A	NR	2E-8		0.0159074	[0.01-0.021] unit increase	Affymetrix [321016] (imputed)	N
616	chr6_mann_hap4	4079811	4079812	rs12055445	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DQB1	rs12055445-G	NR	1E-12		0.0218742	[0.016-0.028] unit decrease	Affymetrix [323123] (imputed)	N
616	chr6_mann_hap4	4079811	4079812	rs12055445	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	6p21.32	NR	rs12055445-A	0.500659	5E-18		0.0175207	[0.014-0.021] unit decrease	NR [NR]	N
616	chr6_mann_hap4	4079811	4079812	rs12055445	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling worry	372,869 European ancestry individuals	NA	6p21.32	HLA-DRA	rs12055445-A	0.498063	3E-12		6.996	unit decrease	NR [10847151] (imputed)	N
616	chr6_mann_hap4	4079811	4079812	rs12055445	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	6p21.32	HLA-DQA1, HLA-DQB1	rs12055445-G	0.513	6E-11		0.0247074	[0.017-0.032] unit decrease	Illumina [13519193] (imputed)	N
616	chr6_mann_hap4	4079858	4079859	rs9273375	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DQB1	rs9273375-G	NR	9E-11		0.0262281	[0.018-0.034] unit increase	Affymetrix [323123] (imputed)	N
616	chr6_mann_hap4	4079955	4079956	rs9273379	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Alanine aminotransferase levels in excessive alcohol consumption	951 individuals	NA	6p21.32	NR	rs9273379-?	NR	2E-6		0.0267	[0.016-0.038] unit decrease	Illumina [~ 7800000] (imputed)	N
616	chr6_mann_hap4	4080042	4080043	rs4713572	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs4713572-C	0.411	2E-15	(Rac GTPase-activating protein 1, RACGAP1.13587.10.3)	0.21	[0.15-0.27] unit increase	Affymetrix [10572788] (imputed)	N
616	chr6_mann_hap4	4082267	4082268	rs9273386	34103634	Valette K	2021-06-08	Commun Biol	Prioritization of candidate causal genes for asthma in susceptibility loci derived from UK Biobank.	Asthma	56,167 White-British ancestry cases, 352,255 White-British ancestry controls	NA	6p21.32	HLA-DQA1, HLA-DQB1	rs9273386-C	0.588625259859572	2E-48		0.13383532	[0.12-0.15] unit increase	Affymetrix [35186738] (imputed)	N
616	chr6_mann_hap4	4082274	4082275	rs4713573	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Juvenile rheumatoid arthritis	216 European ancestry cases, 409,001 European ancestry controls, 110 East Asian ancestry cases, 173,268 East Asian ancestry controls	NA	6p21.32		rs4713573-C	NR	3E-9		0.5903	[0.39-0.79] unit increase	Affymetrix, Illumina [25833140] (imputed)	N
616	chr6_mann_hap4	4082383	4082384	rs28724231	30552173	Aterido A	2018-12-14	Ann Rheum Dis	Genetic variation at the glycosaminoglycan metabolism pathway contributes to the risk of psoriatic arthritis but not psoriasis.	Psoriatic arthritis	744 Spanish ancestry cases, 1,454 Spanish ancestry controls	1,430 cases, 1,417 controls	6p21.32	NR	rs28724231-?	NR	4E-11		6.62	[NR] z-score decrease	Illumina [1387382] (imputed)	N
616	chr6_mann_hap4	4082419	4082420	rs9273401	27189021	Cook JP	2016-05-18	Eur J Hum Genet	Multi-ethnic genome-wide association study identifies novel locus for type 2 diabetes susceptibility.	Type 2 diabetes	746 African American cases, 2,825 African American controls, 743 East Asian ancestry cases, 3,992 East Asian ancestry controls, 7,111 European ancestry cases, 49,688 European ancestry controls, 1,147 Latino cases, 5,352 Latino controls	12,171 European ancestry cases, 56,862 European ancestry controls	6p21.32	MHC	rs9273401-G	0.112	2E-9		1.16	[1.11-1.22]	NR [at least 8497425] (imputed)	N
616	chr6_mann_hap4	4082452	4082453	rs9273404	31816047	Boutin TS	2019-12-09	Hum Mol Genet	Insights into the genetic basis of retinal detachment.	Cataracts (operation)	21,679 British ancestry cases, 387,283 British ancestry controls	NA	6p21.32	HLA-DQB1	rs9273404-?	0.469	3E-8		1.0600239	[1.04-1.08]	Affymetrix [NR] (imputed)	N
616	chr6_mann_hap4	4082452	4082453	rs9273404	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	6p21.32	HLA-DQB1	rs9273404-G	0.47	2E-11	(conditional on rs2070600)	1.08	[NR]	Affymetrix, Illumina [6224355] (imputed)	N
616	chr6_mann_hap4	4082542	4082543	rs9273410	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p21.32	NR	rs9273410-A	0.44	7E-16		1.15	[1.11-1.19]	Affymetrix [9886854] (imputed)	N
616	chr6_mann_hap4	4082542	4082543	rs9273410	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p21.32	NR	rs9273410-A	0.44	3E-22			[NR]	Affymetrix [9886854] (imputed)	N
616	chr6_mann_hap4	4082542	4082543	rs9273410	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p21.32	NR	rs9273410-A	0.44	2E-21		1.13	[1.1-1.16]	Affymetrix [9886854] (imputed)	N
616	chr6_mann_hap4	4082542	4082543	rs9273410	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p21.32	NR	rs9273410-A	0.44	7E-22			[NR]	Affymetrix [9886854] (imputed)	N
616	chr6_mann_hap4	4082542	4082543	rs9273410	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in non-current smokers	16,488 European ancestry cases, 169,688 European ancestry controls	NA	6p21.32	NR	rs9273410-A	0.44	3E-21		1.13	[1.1-1.16]	Affymetrix [9886854] (imputed)	N
616	chr6_mann_hap4	4082542	4082543	rs9273410	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in never smokers	8,631 European ancestry cases, 120,544 European ancestry controls	NA	6p21.32	NR	rs9273410-A	0.44	9E-16		1.15	[1.11-1.19]	Affymetrix [9886854] (imputed)	N
616	chr6_mann_hap4	4082542	4082543	rs9273410	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in ever smokers	12,446 European ancestry cases, 59,145 European ancestry controls	NA	6p21.32	NR	rs9273410-A	0.44	3E-9		1.1	[1.06-1.13]	Affymetrix [9886854] (imputed)	N
616	chr6_mann_hap4	4082542	4082543	rs9273410	30552067	Shrine N	2018-12-11	Lancet Respir Med	Moderate-to-severe asthma in individuals of European ancestry: a genome-wide association study.	Asthma (moderate or severe)	5,135 European ancestry cases, 25,675 European ancestry controls	5,414 European ancestry cases, 21,471 European ancestry controls	6p21.32	HLA-DQB1	rs9273410-A	0.5529999999999999	6E-32		1.21	[1.17-1.25]	Affymetrix [33771858] (imputed)	N
616	chr6_mann_hap4	4082748	4082749	rs9273429	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQB1	rs9273429-G	NR	6E-9		0.0188118	[0.012-0.025] unit decrease	Affymetrix [319769] (imputed)	N
616	chr6_mann_hap4	4082772	4082773	rs1064173	32534018	Liu X	2020-06-10	Brain Behav Immun	Genetic factors underlying the bidirectional relationship between autoimmune and mental disorders - findings from a Danish population-based study.	Autoimmune traits	1,383 Danish ancestry cases, 62,656 Danish ancestry controls	NA	6p21.32	NR	rs1064173-A	0.25	3E-36		1.8	[1.64-1.96]	NR [7721839] (imputed)	N
616	chr6_mann_hap4	4082992	4082993	rs6689	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	6p21.32		rs6689-G	NR	1E-44		0.0349	[0.03-0.04] unit increase	Affymetrix, Illumina [20536134] (imputed)	N
616	chr6_mann_hap4	4082992	4082993	rs6689	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	135,808 East Asian ancestry individuals	NA	6p21.32		rs6689-G	0.191232	2E-10		0.0291023	[0.02-0.038] unit increase	Illumina [13476599] (imputed)	N
616	chr6_mann_hap4	4082992	4082993	rs6689	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	6p21.32	NR	rs6689-?	NR	7E-11				Affymetrix [~ 8270000] (imputed)	N
616	chr6_mann_hap4	4082992	4082993	rs6689	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs6689-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
616	chr6_mann_hap4	4083087	4083088	rs1766	33204752	Butler-Laporte G	2020-09-24	Open Forum Infect Dis	Genetic Determinants of Antibody-Mediated Immune Responses to Infectious Diseases Agents: A Genome-Wide and HLA Association Study.	Anti-varicella zoster virus IgG seropositivity	8,735 White British ancestry individuals	NA	6p21.32	HLA-DQB1	rs1766-A	0.53	1E-11		0.04	unit decrease	NR [25472218] (imputed)	N
616	chr6_mann_hap4	4083125	4083126	rs1770	34212547	An J	2021-07-01	Allergy Asthma Immunol Res	Genome-Wide Association Study of Korean Asthmatics: A Comparison With UK Asthmatics.	Adult asthma	1,386 Korean ancestry cases, 5,205 Korean ancestry controls	NA	6p21.32		rs1770-G	0.17	5E-10		1.41	[1.27-1.58]	Affymetrix [4922160] (imputed)	N
616	chr6_mann_hap4	4083125	4083126	rs1770	31152121	Zhu M	2019-05-31	Diabetes Care	Identification of Novel T1D Risk Loci and Their Association With Age and Islet Function at Diagnosis in Autoantibody-Positive T1D Individuals: Based on a Two-Stage Genome-Wide Association Study.	Type 1 diabetes	1,005 Han Chinese ancestry cases, 1,257 Han Chinese ancestry controls	1,378 Han Chinese ancestry cases, 3,774 Han Chinese ancestry controls	6p21.32	HLA-DQB1	rs1770-G	0.46	2E-232		4.28	[3.92-4.68]	Illumina [787224] (imputed)	N
616	chr6_mann_hap4	4083216	4083217	rs1063348	29903748	Debiec H	2018-06-14	J Am Soc Nephrol	Transethnic, Genome-Wide Analysis Reveals Immune-Related Risk Alleles and Phenotypic Correlates in Pediatric Steroid-Sensitive Nephrotic Syndrome.	Childhood steroid-sensitive nephrotic syndrome	56 African cases, 454 African controls	NA	6p21.32	HLA-DQB1	rs1063348-?	0.48	3E-7		3.24	[1.93-5.45]	Illumina [at least 7529344] (imputed)	N
616	chr6_mann_hap4	4083216	4083217	rs1063348	29903748	Debiec H	2018-06-14	J Am Soc Nephrol	Transethnic, Genome-Wide Analysis Reveals Immune-Related Risk Alleles and Phenotypic Correlates in Pediatric Steroid-Sensitive Nephrotic Syndrome.	Childhood steroid-sensitive nephrotic syndrome	244 European ancestry cases, 2,552 European ancestry controls, 56 African cases, 454 African controls, 85 Maghrebian cases, 261 Maghrebian controls	NA	6p21.32	HLA-DQB1	rs1063348-G	0.60	9E-23		3.33	[2.62-4.23]	Illumina [at least 7529344] (imputed)	N
616	chr6_mann_hap4	4083216	4083217	rs1063348	29903748	Debiec H	2018-06-14	J Am Soc Nephrol	Transethnic, Genome-Wide Analysis Reveals Immune-Related Risk Alleles and Phenotypic Correlates in Pediatric Steroid-Sensitive Nephrotic Syndrome.	Childhood steroid-sensitive nephrotic syndrome	132 European ancestry cases, 2,000 European ancestry controls	NA	6p21.32	HLA-DQB1	rs1063348-?	0.61	1E-8		2.96	[2.04-4.29]	Illumina [at least 7529344] (imputed)	N
616	chr6_mann_hap4	4083231	4083232	rs36205178	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Scarlet fever	6,812 European ancestry cases, 113,837 European ancestry controls	NA	6p21.32	HLA-DQB1	rs36205178-C	0.81	9E-14		1.24	[1.21-1.28]	Illumina [at least 560000] (imputed)	N
616	chr6_mann_hap4	4083377	4083378	rs2854277	29899525	Klimentidis YC	2018-06-13	Int J Obes (Lond)	Genome-wide association study of habitual physical activity in over 377,000 UK Biobank participants identifies multiple variants including CADM2 and APOE.	Moderate to vigorous physical activity levels	377,234 European ancestry individuals	NA	6p21.32	HLA-DQB1	rs2854277-C	0.92	3E-10		0.032	unit increase	Affymetrix [11800000] (imputed)	N
616	chr6_mann_hap4	4083432	4083433	rs9273484	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Agathobacter sp000434275 abundance in stool	5,959 Finnish ancestry individuals	NA	6p21.32		rs9273484-A	0.26703	4E-9		0.114715	[0.077-0.153] unit decrease	Illumina [7980478] (imputed)	N
616	chr6_mann_hap4	4083442	4083443	rs9273487	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.32		rs9273487-A	0.824	4E-20				Affymetrix [10369434] (imputed)	N
616	chr6_mann_hap4	4083636	4083637	rs9273500	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DQB1, HLA-DQB1-AS1, XXbac-BPG254F23.6	rs9273500-T	NR	2E-9		0.0229852	[0.015-0.031] unit increase	Affymetrix [323123] (imputed)	N
616	chr6_mann_hap4	4083655	4083656	rs9273501	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs9273501-A	NR	9E-16		1.1098778	[1.08-1.14]	Affymetrix [7846216] (imputed)	N
616	chr6_mann_hap4	4083722	4083723	rs2854275	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma and major depressive disorder	46,802 European ancestry asthma cases, 59,851 European ancestry major depressive disorder cases, 460,635 European ancestry controls	NA	6p21.32	HLA-DOB, HLA-DQA1, HLA-DQA2, HLA-DQB1, HLA-DQB2, TAP2	rs2854275-?	NR	3E-13				Affymetrix [up to 13554551] (imputed)	N
616	chr6_mann_hap4	4083722	4083723	rs2854275	23326239	Rubicz R	2013-01-10	PLoS Genet	A genome-wide integrative genomic study localizes genetic factors influencing antibodies against Epstein-Barr virus nuclear antigen 1 (EBNA-1).	Epstein-Barr virus immune response (EBNA-1)	1,367 Mexican American indivduals	589 Mexican American indivduals	6p21.32	PSORS1C1, BAT2, EHMT2, HLA-DQB1, C6orf15, BAT4, NOTCH4, PRRT1, HLA-B	rs2854275-T	0.064	2E-10	(Conditional on rs477515 - Quantitative)	0.45	[NR] unit decrease	Illumina [944565]	N
616	chr6_mann_hap4	4083832	4083834	rs201043192	26423011	Wain LV	2015-09-27	Lancet Respir Med	Novel insights into the genetics of smoking behaviour, lung function, and chronic obstructive pulmonary disease (UK BiLEVE): a genetic association study in UK Biobank.	Lung function (low FEV1 vs high FEV1)	19,493 European ancestry individuals with low FEV1 measurements, 9,808 European ancestry individuals with high FEV1 measurements	NA	6p21.32	HLA-DQB1	rs201043192-A	NR	5E-9		0.114	[0.077-0.151] unit increase	Affymetrix [28509962] (imputed)	N
616	chr6_mann_hap4	4083955	4083956	rs28688207	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Sarcoidosis	1,718 European ancestry cases, 484,955 European ancestry controls, 220 East Asian ancestry cases, 177,667 East Asian ancestry controls	NA	6p21.32		rs28688207-C	NR	1E-15		0.7435	[0.56-0.93] unit increase	Affymetrix, Illumina [25845061] (imputed)	N
616	chr6_mann_hap4	4084111	4084112	rs9273542	31263063	Dufek S	2019-07-01	J Am Soc Nephrol	Genetic Identification of Two Novel Loci Associated with Steroid-Sensitive Nephrotic Syndrome.	Childhood steroid-sensitive nephrotic syndrome	422 European ancestry cases, 5,642 European ancestry controls	NA	6p21.32	HLA-DQB1	rs9273542-T	0.24	2E-43		3.39	[2.86-4.03]	Illumina [5216266] (imputed)	N
616	chr6_mann_hap4	4084206	4084207	rs3828785	27560520	Shaffer JR	2016-08-25	PLoS Genet	Genome-Wide Association Study Reveals Multiple Loci Influencing Normal Human Facial Morphology.	Eye morphology	2,447 European ancestry individuals	671 European ancestry individuals	6p21.32	Intergenic	rs3828785-A	0.03169	2E-7	(Outercanthal width)	1.449	[0.91-1.99] unit decrease	Illumina [34985077] (imputed)	N
616	chr6_mann_hap4	4084214	4084215	rs28724235	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.32		rs28724235-T	0.934	1E-16				Affymetrix [10369434] (imputed)	N
616	chr6_mann_hap4	4084215	4084216	rs9273552	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs9273552-A	0.07	2E-31	(Ubiquitin carboxyl-terminal hydrolase 25, USP25.9215.117.3)	0.62	[0.52-0.72] unit increase	Affymetrix [10572788] (imputed)	N
616	chr6_mann_hap4	4084382	4084383	rs28724238	32488134	Auckland K	2020-06-02	Sci Rep	The Human Leukocyte Antigen Locus and Rheumatic Heart Disease Susceptibility in South Asians and Europeans.	Rheumatic heart disease	510 Northern Indian cases, 344 Northern Indian controls, 162 Fijian Indian cases, 147 Fijian Indian controls	150 European ancestry cases, 1,309 European ancestry controls	6p21.32	HLA-DQB1	rs28724238-?		2E-7		1.75	[1.42-2.15]	Illumina [6925553] (imputed)	N
616	chr6_mann_hap4	4084648	4084649	rs28724242	32589924	Bi W	2020-06-23	Am J Hum Genet	A Fast and Accurate Method for Genome-Wide Time-to-Event Data Analysis and Its Application to UK Biobank.	Essential hypertension (time to event)	76,566 British ancestry cases, 206,305 British ancestry controls	NA	6p21.32	HLA-DQB142	rs28724242-?	NR	4E-8				NR [~ 24000000] (imputed)	N
616	chr6_mann_hap4	4085182	4085183	rs1049130	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQB1, XXbac-BPG254F23.6	rs1049130-A	NR	1E-11		0.0190514	[0.014-0.025] unit increase	Affymetrix [321016] (imputed)	N
616	chr6_mann_hap4	4085212	4085213	rs1049087	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hypothyroidism	1,114 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	6p21.32		rs1049087-A	0.609286629	4E-8		0.24121252	[0.16-0.33] unit increase	Illumina [13429045] (imputed)	N
616	chr6_mann_hap4	4085212	4085213	rs1049087	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Lymphocytic leukemia	852 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs1049087-A	NR	7E-7		1.2743725	NR	Affymetrix [7846216] (imputed)	N
616	chr6_mann_hap4	4085482	4085483	rs9274096	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.32		rs9274096-A	0.604	1E-14				Affymetrix [10369434] (imputed)	N
616	chr6_mann_hap4	4087624	4087625	rs9274299	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.32	HLA-DQA1, HLA-DQA2, HLA-DQB1, HLA-DQB2, MIR3135B	rs9274299-?		4E-13		1.1111112	[1.08-1.14]	Affymetrix, Illumina [NR]	N
616	chr6_mann_hap4	4087881	4087882	rs71542462	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	6p21.32		rs71542462-G	0.738074	2E-9		0.0306313	[0.021-0.041] unit decrease	NR [11722792] (imputed)	N
616	chr6_mann_hap4	4088033	4088034	rs9274346	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	6p21.32	HLA-DQB1	rs9274346-C	0.607966	3E-14		0.0152666	[0.011-0.019] unit decrease	Affymetrix [NR] (imputed)	N
616	chr6_mann_hap4	4088052	4088053	rs67842782	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p21.32		rs67842782-C	0.852	5E-9				Affymetrix [10369434] (imputed)	N
616	chr6_mann_hap4	4088114	4088115	rs41263822	33893285	Guindo-Martinez M	2021-04-23	Nat Commun	The impact of non-additive genetic associations on age-related complex diseases.	Cancer	17,131 European ancestry cases, 39,506 European ancestry controls	NA	6p21.32		rs41263822-A	0.420574	2E-10		1.1		Affymetrix [15611556] (imputed)	N
616	chr6_mann_hap4	4088150	4088151	rs9274361	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DQB1	rs9274361-A	NR	7E-10		0.020516	[0.014-0.027] unit decrease	Affymetrix [321169] (imputed)	N
616	chr6_mann_hap4	4088247	4088248	rs1130397	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	6p21.32		rs1130397-A	0.81619	7E-22		0.0518638	[0.041-0.062] unit decrease	NR [11722792] (imputed)	N
616	chr6_mann_hap4	4088247	4088248	rs1130397	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.32		rs1130397-A	0.816	8E-23				Affymetrix [10369434] (imputed)	N
616	chr6_mann_hap4	4088258	4088259	rs17412833	26838040	Kristjansson RP	2016-02-03	Nat Commun	Common and rare variants associating with serum levels of creatine kinase and lactate dehydrogenase.	Lactate dehydrogenase levels	98,585 Icelandic ancestry individuals	NA	6p21.32		rs17412833-T	0.1376	2E-22		0.07	unit increase	Illumina [28300000] (imputed)	N
616	chr6_mann_hap4	4088295	4088296	rs9274384	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs9274384-A	0.727	5E-31	(conditional)	1.415	[1.36-1.47]	Illumina [11270530] (imputed)	N
616	chr6_mann_hap4	4088349	4088350	rs41552812	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	6p21.32	HLA-DQB1	rs41552812-C	0.92962	3E-29		0.0565596	[0.047-0.066] unit increase	Affymetrix [NR] (imputed)	N
616	chr6_mann_hap4	4088443	4088444	rs1140310	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pollinosis	18,593 East Asian ancestry cases, 153,666 East Asian ancestry controls	NA	6p21.32		rs1140310-C	0.301582347	8E-13		0.09507005	[0.069-0.121] unit decrease	Illumina [13429010] (imputed)	N
616	chr6_mann_hap4	4088492	4088493	rs9274407	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQB1	rs9274407-A	NR	3E-9		0.0226345	[0.015-0.03] unit decrease	Affymetrix [319769] (imputed)	N
616	chr6_mann_hap4	4088492	4088493	rs9274407	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DQB1	rs9274407-A	NR	5E-9		0.0222139	[0.015-0.03] unit decrease	Affymetrix [319769] (imputed)	N
616	chr6_mann_hap4	4088492	4088493	rs9274407	21570397	Lucena MI	2011-04-12	Gastroenterology	Susceptibility to amoxicillin-clavulanate-induced liver injury is influenced by multiple HLA class I and II alleles.	Drug-induced liver injury (amoxicillin-clavulanate)	201 European ancestry cases, 532 European ancestry controls	NA	6p21.32	HLA-DRB1-DQB1	rs9274407-?	NR	5E-14		3.1	[2.30-4.20]	Illumina [822927]	N
616	chr6_mann_hap4	4088546	4088547	rs201184533	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	6p21.32	HLA-DQB1	rs201184533-C	NR	9E-17		1.263	[1.21-1.32]	Affymetrix [9000000] (imputed)	N
616	chr6_mann_hap4	4088549	4088550	rs281862010	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6p21.32		rs281862010-C	0.902103	9E-10		0.048298	[0.033-0.064] unit decrease	NR [11722792] (imputed)	N
616	chr6_mann_hap4	4088549	4088550	rs281862010	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs281862010-G	0.103	4E-21	(HLA class II histocompatibility antigen, DQ alpha 2 chain, HLA.DQA2.7757.5.3)	0.44	[0.34-0.54] unit increase	Affymetrix [10572788] (imputed)	N
616	chr6_mann_hap4	4088654	4088655	rs41263828	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.32	NR	rs41263828-?	NR	1E-10				Affymetrix [~ 8270000] (imputed)	N
616	chr6_mann_hap4	4088724	4088725	rs28746806	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DQB1	rs28746806-C	NR	1E-14		0.0253727	[0.019-0.032] unit decrease	Affymetrix [323123] (imputed)	N
616	chr6_mann_hap4	4088890	4088891	rs9274442	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	6p21.32		rs9274442-C	NR	8E-142		0.0773	[0.071-0.083] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
616	chr6_mann_hap4	4088906	4088907	rs28746814	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	6p21.32	HLA-DQB1	rs28746814-T	0.325337	9E-16		0.022020848	[0.017-0.027] unit increase	Affymetrix [93095623] (imputed)	N
616	chr6_mann_hap4	4089090	4089091	rs9274461	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.32		rs9274461-T	0.575	1E-14				Affymetrix [10369434] (imputed)	N
616	chr6_mann_hap4	4089380	4089381	rs9274477	24204295	Han F	2013-10-31	PLoS Genet	Genome wide analysis of narcolepsy in China implicates novel immune loci and reveals changes in association prior to versus after the 2009 H1N1 influenza pandemic.	Narcolepsy (age of onset)	at least 1,000 Chinese ancestry cases	NA	6p21.32	NR	rs9274477-G	0.292	2E-8		1.82	year decrease	Affymetrix [603382]	N
616	chr6_mann_hap4	4089503	4089504	rs41264352	34011352	Schwarm C	2021-05-19	Orphanet J Rare Dis	Identification of two novel bullous pemphigoid- associated alleles, HLA-DQA1*05:05 and -DRB1*07:01, in Germans.	Bullous pemphigoid	438 German cases, 417 German controls	NA	6p21.32	HLA-DQB1	rs41264352-?	NR	4E-10		0.798564	[0.55-1.05] unit increase	Affymetrix [up to 386296] (imputed)	N
616	chr6_mann_hap4	4089893	4089894	rs68033958	32141793	Garman L	2020-03-06	Ocul Immunol Inflamm	Genome-Wide Association Study of Ocular Sarcoidosis Confirms HLA Associations and Implicates Barrier Function and Autoimmunity in African Americans.	Ocular sarcoidosis	260 African American cases, 1,551 African American controls	NA	6p21.32	NR	rs68033958-A	NR	1E-6		1.685	[1.36-2.08]	Illumina [13976150] (imputed)	N
616	chr6_mann_hap4	4090040	4090041	rs9274522	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 62)	3,566 European ancestry individuals	4,680 European ancestry individuals	6p21.32		rs9274522-T	0.322654941	2E-8				Illumina [7417619] (imputed)	N
616	chr6_mann_hap4	4090054	4090055	rs1049055	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TGM3	5,368 Icelandic ancestry individuals	NA	6p21.32		rs1049055-C	0.3996	4E-56		0.302704	[0.27-0.34] unit increase	Illumina [7506463] (imputed)	N
616	chr6_mann_hap4	4090054	4090055	rs1049055	32276964	Shete S	2020-04-10	Cancer Res	A genome-wide association study identifies two novel susceptible regions for squamous cell carcinoma of the head and neck.	Oral cavity cancer	631 European ancestry cases, 4,493 European ancestry controls	2,568 European ancestry cases, 3,232 European ancestry controls	6p21.32	HLA-DQB1	rs1049055-T	0.78	3E-9		1.2820514	[1.18-1.39]	Illumina [7858089] (imputed)	N
616	chr6_mann_hap4	4090131	4090132	rs3891175	28779025	Alberts R	2017-08-04	Gut	Genetic association analysis identifies variants associated with disease progression in primary sclerosing cholangitis.	Autoimmune hepatitis in primary sclerosing cholangitis	107 European ancestry cases, 3,159 European ancestry controls	NA	6p21.32	HLA-DQB1	rs3891175-?	NR	5E-11		2.41		Illumina [130422] (imputed)	N
616	chr6_mann_hap4	4090339	4090340	rs3891173	33893285	Guindo-Martinez M	2021-04-23	Nat Commun	The impact of non-additive genetic associations on age-related complex diseases.	Type 2 diabetes	6,967 European ancestry cases, 49,670 European ancestry controls	NA	6p21.32		rs3891173-T	0.2870184	5E-8		1.14		Affymetrix [15533686] (imputed)	N
616	chr6_mann_hap4	4090341	4090342	rs71542467	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	6p21.32		rs71542467-G	0.8462	8E-13		0.0407075	[0.03-0.052] unit decrease	NR [11722792] (imputed)	N
616	chr6_mann_hap4	4090341	4090342	rs71542467	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs71542467-G	0.846206	3E-16		0.0452701	[0.034-0.056] unit decrease	NR [11722792] (imputed)	N
616	chr6_mann_hap4	4090428	4090429	rs41316204	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs41316204-?	NR	2E-12				Affymetrix [~ 8270000] (imputed)	N
616	chr6_mann_hap4	4090668	4090669	rs4993140	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQB1	rs4993140-C	NR	5E-9		0.0217004	[0.014-0.029] unit increase	Affymetrix [319769] (imputed)	N
616	chr6_mann_hap4	4090668	4090669	rs4993140	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DQB1	rs4993140-C	NR	6E-9		0.0215826	[0.014-0.029] unit increase	Affymetrix [319769] (imputed)	N
616	chr6_mann_hap4	4090668	4090669	rs4993140	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DQB1	rs4993140-C	NR	7E-10		0.0231343	[0.016-0.03] unit increase	Affymetrix [321169] (imputed)	N
616	chr6_mann_hap4	4091262	4091263	rs9274600	26423011	Wain LV	2015-09-27	Lancet Respir Med	Novel insights into the genetics of smoking behaviour, lung function, and chronic obstructive pulmonary disease (UK BiLEVE): a genetic association study in UK Biobank.	Lung function in never smokers (low FEV1 vs high FEV1)	9,745 European ancestry individuals with low FEV1 measurements, 4,902 European ancestry individuals with high FEV1 measurements	NA	6p21.32	HLA-DQB1, HLA-DQA2	rs9274600-G	0.472	1E-10		1.18	[1.13-1.25]	Affymetrix [28509962] (imputed)	N
616	chr6_mann_hap4	4091573	4091574	rs3828794	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6p21.32	NR	rs3828794-G	0.5206	1E-9		1.0380982	[1.03-1.05]	Affymetrix [15688218] (imputed)	N
616	chr6_mann_hap4	4091619	4091620	rs2647025	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	6p21.32	NR	rs2647025-?	NR	4E-99	(conditional)			Affymetrix [15688218] (imputed)	N
616	chr6_mann_hap4	4091668	4091669	rs9274623	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	6p21.32	NR	rs9274623-G	NR	6E-19		1.1363636	[NR]	Illumina [7158791] (imputed)	N
616	chr6_mann_hap4	4091733	4091734	rs3828800	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DQB1	rs3828800-A	NR	1E-8		0.0236155	[0.016-0.032] unit decrease	Affymetrix [323123] (imputed)	N
616	chr6_mann_hap4	4091790	4091791	rs3828805	34642315	Ferreiro-Iglesias A	2021-10-12	Nat Commun	Germline determinants of humoral immune response to HPV-16 protect against oropharyngeal cancer.	Oropharynx cancer and human papilloma virus 16 negative oropharyngeal cancer	2,359 European ancestry cases, 565 European ancestry controls	NA	6p21.32		rs3828805-C	NR	3E-9		1.2999		Illumina [up to 7574753] (imputed)	N
616	chr6_mann_hap4	4091790	4091791	rs3828805	27749845	Lesseur C	2016-10-17	Nat Genet	Genome-wide association analyses identify new susceptibility loci for oral cavity and pharyngeal cancer.	Oropharynx cancer	2,506 European ancestry cases, 135 cases, 5,984 European ancestry controls, 601 controls	NA	6p21.32	HLA-DQB1	rs3828805-C	0.720208999141883	2E-12		1.3699		Illumina [7574753] (imputed)	N
616	chr6_mann_hap4	4091790	4091791	rs3828805	27749845	Lesseur C	2016-10-17	Nat Genet	Genome-wide association analyses identify new susceptibility loci for oral cavity and pharyngeal cancer.	Oral cavity and pharyngeal cancer	2,717 European ancestry oral cavity cancer cases, 273 oral cavity cancer cases, 2,506 European ancestry oropharynx cancer cases, 135 oropharynx cancer cases, 305 European and unknown ancestry hypopharynx cancer cases, 73 European and unknown ancestry overlapping cases, 25 European and unknown ancestry cases, 5,984 European ancestry controls, 601 controls	NA	6p21.32	HLA-DQB1	rs3828805-C	0.72	3E-13		1.2759		Illumina [7574753] (imputed)	N
616	chr6_mann_hap4	4092034	4092035	rs9274657	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.32	HLA-DQA1, HLA-DQB1, HLA-DRB1, HLA-DRB6	rs9274657-A		1E-8		1.07	[1.04-1.09]	Affymetrix, Illumina [NR]	N
616	chr6_mann_hap4	4092046	4092047	rs2856698	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	6p21.32		rs2856698-G	NR	1E-158		0.2523	[0.23-0.27] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
616	chr6_mann_hap4	4092046	4092047	rs2856698	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	6p21.32	HLA-DQB1	rs2856698-G	0.328285	3E-170		0.2688451	[0.25-0.29] unit increase	Affymetrix [7288503] (imputed)	N
616	chr6_mann_hap4	4092055	4092056	rs9274659	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (age of onset)	37,846 British ancestry individuals	NA	6p21.32	NR	rs9274659-A	0.67	7E-18		1.249	[0.96-1.53] unit decrease	Affymetrix [10894596] (imputed)	N
616	chr6_mann_hap4	4092165	4092166	rs9461792	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DQB1	rs9461792-A	NR	2E-14		0.0240826	[0.018-0.03] unit increase	Affymetrix [321169] (imputed)	N
616	chr6_mann_hap4	4092188	4092189	rs9461793	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	6p21.32	NR	rs9461793-A	0.721618	2E-16		0.0108832	[0.0081-0.0136] unit increase	Affymetrix [16585854] (imputed)	N
616	chr6_mann_hap4	4092188	4092189	rs9461793	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	6p21.32	NR	rs9461793-A	0.721618	3E-9		0.0092307	[0.0061-0.0124] unit increase	Affymetrix [16585866] (imputed)	N
616	chr6_mann_hap4	4092310	4092311	rs17205409	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.32		rs17205409-T	0.71	8E-19				Affymetrix [10369434] (imputed)	N
616	chr6_mann_hap4	4092316	4092317	rs9274678	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	6p21.32	HLA-DQB1	rs9274678-G	0.153747	3E-39		0.0256517	[0.02-0.031] unit increase	Affymetrix [93095623] (imputed)	N
616	chr6_mann_hap4	4092369	4092370	rs28371206	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQB1	rs28371206-A	NR	4E-13		0.022406	[0.016-0.028] unit increase	Affymetrix [319769] (imputed)	N
616	chr6_mann_hap4	4092369	4092370	rs28371206	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DQB1	rs28371206-A	NR	3E-13		0.0226484	[0.017-0.029] unit increase	Affymetrix [319769] (imputed)	N
616	chr6_mann_hap4	4092401	4092402	rs184950714	32581322	Kakuta Y	2020-06-24	Sci Rep	An Integrated Genomic and Transcriptomic Analysis Reveals Candidates of Susceptibility Genes for Crohn's Disease in Japanese Populations.	Crohn's disease	713 Japanese ancestry cases, 2,063 Japanese ancestry controls	NA	6p21.32	HLA	rs184950714-?	NR	1E-17		1.16	[1.12-1.19]	NR [7424691] (imputed)	N
616	chr6_mann_hap4	4092401	4092402	rs184950714	30500874	Kakuta Y	2018-11-29	J Crohns Colitis	A genome-wide association study identifying RAP1A as a novel susceptibility gene for Crohn's disease in Japanese individuals.	Crohn's disease	713 Japanese ancestry cases, 2,083 Japanese ancestry controls	770 Japanese ancestry cases, 852 Japanese ancestry controls	6p21.32	HLA-DQB1	rs184950714-?	0.156	4E-19		2.05	NR	NR [4335144] (imputed)	N
616	chr6_mann_hap4	4092670	4092671	rs9274695	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQB1	rs9274695-T	NR	5E-9		0.0173565	[0.012-0.023] unit increase	Affymetrix [319769] (imputed)	N
616	chr6_mann_hap4	4092670	4092671	rs9274695	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DQB1	rs9274695-T	NR	3E-8		0.0165442	[0.011-0.022] unit increase	Affymetrix [319769] (imputed)	N
616	chr6_mann_hap4	4092670	4092671	rs9274695	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DQB1	rs9274695-T	NR	1E-11		0.021862	[0.016-0.028] unit decrease	Affymetrix [323123] (imputed)	N
616	chr6_mann_hap4	4092831	4092832	rs17205528	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p21.32	NR	rs17205528-?	NR	3E-12		0.1232	[0.088-0.158] unit increase	Illumina [at least 560000] (imputed)	N
616	chr6_mann_hap4	4092886	4092887	rs9274704	31719529	Lyons PA	2019-11-12	Nat Commun	Genome-wide association study of eosinophilic granulomatosis with polyangiitis reveals genomic loci stratified by ANCA status.	Eosinophilic granulomatosis with polyangiitis	534 European ancestry cases, 6,688 European ancestry controls	142 European and unknown ancestry cases, 121 European and unknown ancestry controls	6p21.32	HLA-DQ	rs9274704-?	NR	1E-20		0.7	NR unit increase	Affymetrix [9246221] (imputed)	N
616	chr6_mann_hap4	4093082	4093083	rs17205640	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	150,708 East Asian ancestry individuals	NA	6p21.32	NR	rs17205640-T	0.456457	2E-22		0.047325	[0.038-0.057] SD units increase	Affymetrix, Illumina [16709798] (imputed)	N
616	chr6_mann_hap4	4093082	4093083	rs17205640	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	149,861 East Asian ancestry individuals	NA	6p21.32	NR	rs17205640-T	0.456482	8E-17		0.040531	[0.031-0.05] SD units increase	Affymetrix, Illumina [16709126] (imputed)	N
616	chr6_mann_hap4	4093082	4093083	rs17205640	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	142,940 East Asian ancestry individuals	NA	6p21.32	NR	rs17205640-T	0.455611	1E-14		0.038007	[0.028-0.048] SD units increase	Affymetrix, Illumina [16289021] (imputed)	N
616	chr6_mann_hap4	4093140	4093141	rs9274719	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	81,042 East Asian ancestry individuals	NA	6p21.32	NR	rs9274719-T	0.330615	3E-10		0.040123	[0.028-0.053] SD units increase	Affymetrix, Illumina [16286709] (imputed)	N
616	chr6_mann_hap4	4093166	4093167	rs3997832	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQB1	rs3997832-C	NR	3E-15		0.022848	[0.017-0.029] unit increase	Affymetrix [319769] (imputed)	N
616	chr6_mann_hap4	4093166	4093167	rs3997832	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DQB1	rs3997832-C	NR	5E-15		0.0226927	[0.017-0.028] unit increase	Affymetrix [319769] (imputed)	N
616	chr6_mann_hap4	4093242	4093243	rs9274725	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DQB1	rs9274725-T	NR	8E-18		0.0244981	[0.019-0.03] unit increase	Affymetrix [321169] (imputed)	N
616	chr6_mann_hap4	4093412	4093413	rs1694129	33768542	Liu Y	2021-03-26	Clin Pharmacol Ther	Class II HLA Variants Associate with Risk of Pegaspargase Hypersensitivity.	Asparaginase hypersensitivity in acute lymphoblastic leukemia	2,168 European ancestry individuals	NA	6p21.32	HLA-DQB1	rs1694129-T	NR	1E-8		2.03	[NR]	Illumina [NR] (imputed)	N
616	chr6_mann_hap4	4093844	4093845	rs28746882	33143745	Andlauer TFM	2020-11-04	BMC Med	Treatment- and population-specific genetic risk factors for anti-drug antibodies against interferon-beta: a GWAS.	Binding antibody response to interferon beta therapy in multiple sclerosis (antibody levels; all treatment preparations)	up to 2,000 German and Swedish ancestry individuals	up to 757 German and Swedish ancestry individuals	6p21.32		rs28746882-A	0.08	5E-11	(conditional on rs9272071)	0.27678168	[0.19-0.36] unit increase	Illumina [8550834] (imputed)	N
616	chr6_mann_hap4	4093868	4093869	rs11751495	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in IDL	115,082 European ancestry individuals	NA	6p21.32		rs11751495-C	0.972783	2E-10		0.082651	[0.057-0.108] unit decrease	NR [11722792] (imputed)	N
616	chr6_mann_hap4	4093868	4093869	rs11751495	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	6p21.32	HLA-DQB1	rs11751495-G	0.027062	6E-16		0.05776946	[0.044-0.072] unit decrease	Affymetrix [93095623] (imputed)	N
616	chr6_mann_hap4	4095797	4095798	rs9274845	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium HDL	115,082 European ancestry individuals	NA	6p21.32		rs9274845-C	0.579977	1E-11		0.0273653	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
616	chr6_mann_hap4	4095797	4095798	rs9274845	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium HDL	115,082 European ancestry individuals	NA	6p21.32		rs9274845-C	0.579977	6E-13		0.0292315	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
616	chr6_mann_hap4	4095797	4095798	rs9274845	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in HDL	115,082 European ancestry individuals	NA	6p21.32		rs9274845-C	0.579977	6E-9		0.0228022	[0.015-0.03] unit decrease	NR [11722792] (imputed)	N
616	chr6_mann_hap4	4095797	4095798	rs9274845	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	6p21.32		rs9274845-C	0.579977	1E-8		0.022675	[0.015-0.03] unit decrease	NR [11722792] (imputed)	N
616	chr6_mann_hap4	4095797	4095798	rs9274845	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein A1 levels	115,082 European ancestry individuals	NA	6p21.32		rs9274845-C	0.579977	1E-8		0.0226077	[0.015-0.03] unit decrease	NR [11722792] (imputed)	N
616	chr6_mann_hap4	4095805	4095806	rs9274846	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium HDL particles	115,082 European ancestry individuals	NA	6p21.32		rs9274846-C	0.579991	3E-10		0.0251988	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
616	chr6_mann_hap4	4095805	4095806	rs9274846	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium HDL	115,082 European ancestry individuals	NA	6p21.32		rs9274846-C	0.579991	9E-9		0.0230622	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
616	chr6_mann_hap4	4095805	4095806	rs9274846	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	6p21.32		rs9274846-C	0.579991	7E-9		0.023128	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
616	chr6_mann_hap4	4096812	4096813	rs9274890	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs9274890-A	0.257	2E-12	(Complement C4, C4A.C4B.4481.34.2)	0.22	[0.16-0.28] unit increase	Affymetrix [10572788] (imputed)	N
616	chr6_mann_hap4	4096885	4096886	rs9274903	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs9274903-A	0.266	4E-14	(Complement C4, C4A.C4B.4481.34.2)	0.22	[0.16-0.28] unit increase	Affymetrix [10572788] (imputed)	N
616	chr6_mann_hap4	4097542	4097543	rs9274954	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	HLA-DQB1	rs9274954-T	0.366	5E-13	(PAX-interacting protein 1, PAXIP1.12894.3.3)	0.22	[0.16-0.28] unit increase	Affymetrix [10572788] (imputed)	N
616	chr6_mann_hap4	4098145	4098146	rs1794484	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lung cancer	4,444 East Asian ancestry cases, 174,282 East Asian ancestry controls	NA	6p21.32		rs1794484-C	0.340651021	5E-10		0.1469222	[0.1-0.19] unit increase	Illumina [13429980] (imputed)	N
616	chr6_mann_hap4	4098419	4098420	rs1694123	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	HLA-DQB1	rs1694123-G	0.157	8E-13	(Zinc fingers and homeoboxes protein 3, ZHX3.10036.201.3)	0.27	[0.19-0.35] unit increase	Affymetrix [10572788] (imputed)	N
616	chr6_mann_hap4	4101188	4101189	rs3134986	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	6p21.32	NA	rs3134986-T	0.2899	9E-9		0.002	[0.0014-0.0026] unit decrease	Affymetrix [15275733] (imputed)	N
616	chr6_mann_hap4	4105524	4105525	rs9275052	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.32	NR	rs9275052-G	NR	1E-10		0.028	unit decrease	Affymetrix [at least 7091467] (imputed)	N
616	chr6_mann_hap4	4105524	4105525	rs9275052	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.32	NR	rs9275052-G	0.404	5E-9	(EA)	0.027	unit decrease	Affymetrix [at least 7091467] (imputed)	N
616	chr6_mann_hap4	4105524	4105525	rs9275052	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.32	NR	rs9275052-G	NR	2E-6		0.021	unit decrease	Affymetrix [at least 7091467] (imputed)	N
616	chr6_mann_hap4	4106317	4106318	rs545072519	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	HLA-DQB1	rs545072519-C	NR	2E-9		0.0333434	[0.022-0.044] unit increase	Affymetrix [321114] (imputed)	N
616	chr6_mann_hap4	4107036	4107037	rs1694112	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	6p21.32	NR	rs1694112-?	NR	8E-41	(conditional)			Affymetrix [15688218] (imputed)	N
616	chr6_mann_hap4	4107048	4107049	rs9275109	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	HLA-DQB1	rs9275109-G	NR	2E-9		0.0176049	[0.012-0.023] unit decrease	Affymetrix [321114] (imputed)	N
616	chr6_mann_hap4	4107989	4107990	rs9275134	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Cancer	56,634 White British ancestry cases, 218,196 White British ancestry controls	NA	6p21.32		rs9275134-?	NR	6E-6		0.964671	[0.95-0.98]	NR [688737]	N
616	chr6_mann_hap4	4108138	4108139	rs17205731	33143745	Andlauer TFM	2020-11-04	BMC Med	Treatment- and population-specific genetic risk factors for anti-drug antibodies against interferon-beta: a GWAS.	Binding antibody response to interferon beta therapy in multiple sclerosis (antibody levels; IFN?-1b subcutaneous)	up to 2,000 German and Swedish ancestry individuals	up to 757 German and Swedish ancestry individuals	6p21.32		rs17205731-T	0.05	2E-11	(conditional on HLA-DRB1*04:01)	0.62026006	[0.44-0.8] unit increase	Illumina [8550834] (imputed)	N
616	chr6_mann_hap4	4108456	4108457	rs17212146	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	6p21.32		rs17212146-A	0.01175	2E-14		0.08258159	[0.061-0.104] unit increase	Affymetrix [93095623] (imputed)	N
616	chr6_mann_hap4	4108456	4108457	rs17212146	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6p21.32		rs17212146-A	0.01175	3E-25		0.11182327	[0.091-0.133] unit increase	Affymetrix [93095623] (imputed)	N
616	chr6_mann_hap4	4108917	4108918	rs17212223	24204295	Han F	2013-10-31	PLoS Genet	Genome wide analysis of narcolepsy in China implicates novel immune loci and reveals changes in association prior to versus after the 2009 H1N1 influenza pandemic.	Narcolepsy (age of onset)	at least 1,000 Chinese ancestry cases	NA	6p21.32	NR	rs17212223-T	0.191	3E-8		1.95	year decrease	Affymetrix [603382]	N
616	chr6_mann_hap4	4109572	4109573	rs9275152	31660654	Bandres-Ciga S	2019-10-29	Mov Disord	The Genetic Architecture of Parkinson Disease in Spain: Characterizing Population-Specific Risk, Differential Haplotype Structures, and Providing Etiologic Insight.	Parkinson's disease	4,639 Spanish ancestry cases, 2,949 Spanish ancestry controls	NA	6p21.32	HLA-DQB1	rs9275152-C	0.08263	2E-8		0.376551	[0.25-0.51] unit decrease	Illumina [9911207] (imputed)	N
616	chr6_mann_hap4	4109654	4109655	rs3104361	33204752	Butler-Laporte G	2020-09-24	Open Forum Infect Dis	Genetic Determinants of Antibody-Mediated Immune Responses to Infectious Diseases Agents: A Genome-Wide and HLA Association Study.	Helicobacter pylori OMP antibody levels	2,640 White British ancestry individuals	NA	6p21.32	HLA-DQB1	rs3104361-T	0.418	7E-10		0.18	[0.12-0.24] unit decrease	NR [25472218] (imputed)	N
616	chr6_mann_hap4	4109693	4109694	rs7755224	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	6p21.32	NR	rs7755224-?	NR	5E-138	(conditional)			Affymetrix [15688218] (imputed)	N
616	chr6_mann_hap4	4109735	4109736	rs3021058	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Automobile speeding propensity	404,291 European ancestry individuals	NA	6p21.32	HLA-DQB1	rs3021058-A	0.5386	4E-8		0.012403218	[0.008-0.0168] unit increase	Affymetrix [11514463] (imputed)	N
616	chr6_mann_hap4	4109845	4109846	rs3021176	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hepatic cancer	379 European ancestry cases, 475,259 European ancestry controls, 2,122 East Asian ancestry cases, 159,201 East Asian ancestry controls	NA	6p21.32		rs3021176-A	NR	2E-9		0.2342	[0.16-0.31] unit increase	Affymetrix, Illumina [25843189] (imputed)	N
616	chr6_mann_hap4	4109996	4109997	rs9275160	34431594	Atkins JL	2021-08-25	Aging Cell	A genome-wide association study of the frailty index highlights brain pathways in ageing.	Frailty index	175,226 European ancestry individuals	NA	6p21.32	HLA-DQB1, HLA-DQA2	rs9275160-A	0.3397	7E-28		0.0382	[0.031-0.045] unit increase	Affymetrix, Illumina [7666890] (imputed)	N
616	chr6_mann_hap4	4109996	4109997	rs9275160	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	6p21.32	NR	rs9275160-A	NR	9E-8		1.044	[1.03-1.06]	Affymetrix, Illumina [29235255] (imputed)	N
616	chr6_mann_hap4	4110161	4110162	rs28746950	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs28746950-A	0.172	4E-13	(Ubiquitin carboxyl-terminal hydrolase 25, USP25.9215.117.3)	0.27	[0.19-0.35] unit increase	Affymetrix [10572788] (imputed)	N
616	chr6_mann_hap4	4110323	4110324	rs115712830	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28- CD4-CD8- T cell Absolute Count	3,408 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs115712830-C	0.15817	5E-8		0.2914	[0.19-0.4] unit decrease	Illumina [18340221] (imputed)	N
616	chr6_mann_hap4	4111347	4111348	rs9275171	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	2,495 East Asian ancestry cases, 4,283 East Asian ancestry controls	NA	6p21.32		rs9275171-G	NR	5E-29		0.446594	[0.37-0.52] unit increase	NR [5275424] (imputed)	N
616	chr6_mann_hap4	4111550	4111551	rs9275177	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	IgA nephropathy	1,180 East Asian ancestry cases, 899 East Asian ancestry controls	NA			rs9275177-T	NR	2E-6		0.362916	[0.21-0.51] unit increase	Illumina [NR] (imputed)	N
616	chr6_mann_hap4	4112089	4112090	rs9275184	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	6p21.32	NR	rs9275184-C	0.1106	6E-24		0.0981	[0.079-0.117] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
616	chr6_mann_hap4	4112197	4112198	rs2856687	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	6p21.32	NR	rs2856687-C	0.588689	2E-12		0.0486468	[0.035-0.062] unit decrease	Affymetrix [17914406] (imputed)	N
616	chr6_mann_hap4	4112352	4112353	rs28747027	32573827	Huang YH	2020-06-23	Aliment Pharmacol Ther	Large-scale genome-wide association study identifies HLA class II variants associated with chronic HBV infection: a study from Taiwan Biobank.	Chronic hepatitis B infection	1,810 East Asian cases, 9,002 East Asian seropositive controls	648 East Asian cases, 3,190 East Asian seropositive controls	6p21.32	NR	rs28747027-G	0.4639	7E-21		1.41	[1.32-1.52]	Affymetrix [583383]	N
616	chr6_mann_hap4	4112922	4112923	rs13194877	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs13194877-A	0.2	6E-9		4.48	[3.41-5.89]	Illumina [NR] (imputed)	N
616	chr6_mann_hap4	4113104	4113105	rs3129783	33143745	Andlauer TFM	2020-11-04	BMC Med	Treatment- and population-specific genetic risk factors for anti-drug antibodies against interferon-beta: a GWAS.	Binding antibody response to interferon beta therapy in multiple sclerosis (antibody levels; IFN?-1a subcutaneous and intramuscular)	up to 2,000 German and Swedish ancestry individuals	up to 757 German and Swedish ancestry individuals	6p21.32		rs3129783-G	0.44	4E-19		0.3	[-0.24--0.36] unit decrease	Illumina [8550834] (imputed)	N
616	chr6_mann_hap4	4113290	4113291	rs189311301	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs189311301-C	0.991	3E-10		2.233	[1.98-2.48]	Illumina [11270530] (imputed)	N
616	chr6_mann_hap4	4113440	4113440	rs201452941	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.32	HLA-DQB1, HLA-DQA2	rs201452941-?	0.611	7E-12	(women)	0.0399317	[0.029-0.051] unit decrease	Illumina [13520550] (imputed)	N
616	chr6_mann_hap4	4113442	4113442	rs111626885	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.32	Intergenic	rs111626885-?	NR	7E-12	(women)	0.0399302	[0.029-0.051] unit decrease	Illumina [13520550] (imputed)	N
616	chr6_mann_hap4	4114823	4114824	rs3129716	26316170	Demirci FY	2015-08-28	Arthritis Rheumatol	Identification of a New Susceptibility Locus for Systemic Lupus Erythematosus on Chromosome 12 in Individuals of European Ancestry.	Systemic lupus erythematosus	661 European ancestry cases, 487 European ancestry controls	4,467 European ancestry cases, 9,114 European ancestry controls	6p21.32	HLA-DQB1	rs3129716-?	NR	4E-9				Affymetrix [up to 700598]	N
616	chr6_mann_hap4	4114931	4114932	rs4642516	30012571	Jia X	2018-07-16	J Am Soc Nephrol	Strong Association of the HLA-DR/DQ Locus with Childhood Steroid-Sensitive Nephrotic Syndrome in the Japanese Population.	Childhood steroid-sensitive nephrotic syndrome	224 Japanese ancestry cases, 412 Japanese ancestry controls	216 Japanese ancestry cases, 719 Japanese ancestry controls	6p21.32	HLA-DR, HLA-DQ	rs4642516-T	0.73	7E-13		3.030303	[2.44-3.85]	Affymetrix [4105543] (imputed)	N
616	chr6_mann_hap4	4114966	4114967	rs7774434	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	8,021 European ancestry cases, 16,489 European ancestry controls, 2,495 East Asian ancestry cases, 4,283 East Asian ancestry controls	NA	6p21.32		rs7774434-C	NR	3E-116		0.462101	[0.42-0.5] unit increase	NR [2787054] (imputed)	N
616	chr6_mann_hap4	4114966	4114967	rs7774434	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	8,021 European ancestry cases, 16,489 European ancestry controls	NA	6p21.32		rs7774434-C	NR	4E-104		0.470454	[0.43-0.51] unit increase	NR [5054572] (imputed)	N
616	chr6_mann_hap4	4114966	4114967	rs7774434	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	MTCO3P1	rs7774434-C	NR	6E-9		0.0168538	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
616	chr6_mann_hap4	4114966	4114967	rs7774434	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	MTCO3P1	rs7774434-C	NR	2E-8		0.0162768	[0.011-0.022] unit increase	Affymetrix [319769] (imputed)	N
616	chr6_mann_hap4	4114966	4114967	rs7774434	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	MTCO3P1	rs7774434-C	NR	2E-10		0.0201596	[0.014-0.026] unit decrease	Affymetrix [323123] (imputed)	N
616	chr6_mann_hap4	4114966	4114967	rs7774434	26394269	Cordell HJ	2015-09-22	Nat Commun	International genome-wide meta-analysis identifies new primary biliary cirrhosis risk loci and targetable pathogenic pathways.	Primary biliary cholangitis	2,764 European ancestry cases, 10,475 European ancestry controls	3,716 European ancestry cases,  4,261 European ancestry controls	6p21.32	MHC	rs7774434-C	0.47	2E-56		1.68	NR	Illumina [1143634] (imputed)	N
616	chr6_mann_hap4	4114966	4114967	rs7774434	22961000	Liu JZ	2012-10-01	Nat Genet	Dense fine-mapping study identifies new susceptibility loci for primary biliary cirrhosis.	Primary biliary cirrhosis	2,861 British and Irish ancestry cases, 8,514 British and Irish ancestry controls	NA	6p21.32	HLA	rs7774434-C	0.38	1E-48		1.57		Illumina [237619] (imputed)	N
616	chr6_mann_hap4	4114966	4114967	rs7774434	21399635	Mells GF	2011-03-13	Nat Genet	Genome-wide association study identifies 12 new susceptibility loci for primary biliary cirrhosis.	Primary biliary cholangitis	1,840 European ancestry cases, 5,163 European ancestry controls and (Liu et al)	620 European ancestry cases, 2,514 European ancestry controls	6p21.32	MHC	rs7774434-C	0.38	4E-34		1.6	[1.48-1.73]	Illumina [507467]	N
616	chr6_mann_hap4	4114966	4114967	rs7774434	20639880	Liu X	2010-07-18	Nat Genet	Genome-wide meta-analyses identify three loci associated with primary biliary cirrhosis.	Primary biliary cholangitis	453 European ancestry cases, 945 European ancestry controls,	481 European ancestry cases, 3,706 European ancestry controls	6p21.32	HLA-DQB1	rs7774434-C	0.371	3E-26		1.75	[NR]	Illumina [276459]	N
616	chr6_mann_hap4	4115208	4115209	rs9275210	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	MTCO3P1	rs9275210-T	NR	9E-9		0.0164099	[0.011-0.022] unit increase	Affymetrix [321114] (imputed)	N
616	chr6_mann_hap4	4115307	4115308	rs7775055	23603761	Hinks A	2013-04-21	Nat Genet	Dense genotyping of immune-related disease regions identifies 14 new susceptibility loci for juvenile idiopathic arthritis.	Juvenile idiopathic arthritis (oligoarticular or rheumatoid factor-negative polyarticular)	2,816 European ancestry cases, 13,056 European ancestry controls	NA	6p21.32	HLA-DQA2, HLA-DQB1	rs7775055-G	0.02	3E-174	(dominant model)	6.01	[5.30-6.81]	Illumina [123003]	N
616	chr6_mann_hap4	4115307	4115308	rs7775055	22936693	Juran BD	2012-08-29	Hum Mol Genet	Immunochip analyses identify a novel risk locus for primary biliary cirrhosis at 13q14, multiple independent associations at four established risk loci and epistasis between 1p31 and 7q32 risk variants.	Primary biliary cirrhosis	2,216 European ancestry cases, 5,594 Europen ancestry controls	NA	6p21.32	NR	rs7775055-C		1E-33		3.71	[3.00-4.59]	Illumina [109812]	N
616	chr6_mann_hap4	4115784	4115785	rs7775228	33106546	Johnson TA	2020-10-26	J Hum Genet	Association of an IGHV3-66 gene variant with Kawasaki disease.	Kawasaki disease	1,276 East Asian ancestry cases, 5,086 East Asian ancestry controls	2,152 East Asian ancestry cases, 2,751 East Asian ancestry controls	6p21.32	HLA-DQB1	rs7775228-C	NR	7E-13		1.26	[1.19-1.35]	Affymetrix, Illumina [6265045] (imputed)	N
616	chr6_mann_hap4	4115784	4115785	rs7775228	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.32	NR	rs7775228-?	NR	3E-6	(EA, C-C motif chemokine 19)			Affymetrix [509946]	N
616	chr6_mann_hap4	4115784	4115785	rs7775228	25147954	Enroth S	2014-08-22	Nat Commun	Strong effects of genetic and lifestyle factors on biomarker variation and use of personalized cutoffs.	CCL19 levels	up to 653 individuals	up to 317 individuals	6p21.32	HLA-DQB1	rs7775228-C	0.16731	3E-13		0.51	[0.37-0.65] unit increase	Illumina [4840842] (imputed)	N
616	chr6_mann_hap4	4115784	4115785	rs7775228	22036096	Ramasamy A	2011-11-01	J Allergy Clin Immunol	A genome-wide meta-analysis of genetic variants associated with allergic rhinitis and grass sensitization and their interaction with birth order.	IgE grass sensitization	2,315 European ancestry cases, 10,032 European ancestry controls	NA	6p21.32	HLA region	rs7775228-C	0.13	2E-9		1.33	[1.21-1.45]	Affymetrix, Illumina [2217510] (imputed)	N
616	chr6_mann_hap4	4115784	4115785	rs7775228	21804548	Hirota T	2011-07-31	Nat Genet	Genome-wide association study identifies three new susceptibility loci for adult asthma in the Japanese population.	Asthma	1,532 Japanese ancestry cases, 3,304 Japanese ancestry controls	5,639 Japanese ancestry cases, 24,608 Japanese ancestry controls	6p21.32	HLA-DQB1	rs7775228-A	0.63	5E-15		1.17	[1.12-1.21]	Illumina [458847]	N
616	chr6_mann_hap4	4116015	4116016	rs9469220	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	MTCO3P1	rs9469220-A	NR	5E-16		0.0228026	[0.017-0.028] unit increase	Affymetrix [319769] (imputed)	N
616	chr6_mann_hap4	4116015	4116016	rs9469220	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	MTCO3P1	rs9469220-A	NR	9E-16		0.0226045	[0.017-0.028] unit increase	Affymetrix [319769] (imputed)	N
616	chr6_mann_hap4	4116015	4116016	rs9469220	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	MTCO3P1	rs9469220-A	NR	5E-18		0.0246439	[0.019-0.03] unit increase	Affymetrix [321169] (imputed)	N
616	chr6_mann_hap4	4116015	4116016	rs9469220	30230522	Zhang S	2018-09-19	Br J Dermatol	Subtype-Specific Inherited Predisposition to Pemphigus in Chinese Population.	Pemphigus vulgaris	255 Chinese ancestry cases, 501 Chinese ancestry controls	110 Chinese ancestry cases, 604 Chinese ancestry controls	6p21.32	NR	rs9469220-G	0.33	4E-19		3.36	NR	Affymetrix [416397]	N
616	chr6_mann_hap4	4116015	4116016	rs9469220	30230522	Zhang S	2018-09-19	Br J Dermatol	Subtype-Specific Inherited Predisposition to Pemphigus in Chinese Population.	Pemphigus	350 Chinese ancestry cases, 501 Chinese ancestry controls	146 Chinese ancestry cases, 604 Chinese ancestry controls	6p21.32	NR	rs9469220-G	0.33	7E-22		3.2	NR	Affymetrix [416397]	N
616	chr6_mann_hap4	4116015	4116016	rs9469220	23146381	Levin AM	2012-11-10	J Allergy Clin Immunol	A meta-analysis of genome-wide association studies for serum total IgE in diverse study populations.	IgE levels	2,469 African American individuals, 259 Latino individuals, 1,564 European ancestry individuals	2,961 African American individuals, 1,477 Latino individuals, 649 European ancestry individuals, 680 Hutterite individuals	6p21.32	HLA-DQB1	rs9469220-G	NR	2E-7		0.09	[0.05-0.12] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
616	chr6_mann_hap4	4116015	4116016	rs9469220	17554300	Wellcome Trust Case Control Consortium	2007-06-07	Nature	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Crohn's disease	1,748 European ancestry cases, 2,938 European ancestry controls	(see Parkes 2007)	6p21.32	NR	rs9469220-A	0.48	2E-6		1.14	[0.98-1.32]	Affymetrix [469557]	N
616	chr6_mann_hap4	4116390	4116391	rs34723256	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs34723256-A	0.059	4E-68	(conditional)	2.282	[2.19-2.37]	Illumina [11270530] (imputed)	N
616	chr6_mann_hap4	4116411	4116412	rs2858330	31985003	Boocock J	2020-01-27	Hum Mol Genet	Genomic dissection of 43 serum urate-associated loci provides multiple insights into molecular mechanisms of urate control.	Urate levels	110,238 European ancestry individuals, 21,471 East Asian individuals	NA	6p21.32	HLA-DQB1	rs2858330-T		4E-8		0.027	[0.017-0.037] mg/dl increase	NR [NR] (imputed)	N
616	chr6_mann_hap4	4116624	4116625	rs9275218	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	MTCO3P1	rs9275218-G	NR	1E-11		0.0205042	[0.015-0.026] unit increase	Affymetrix [321169] (imputed)	N
616	chr6_mann_hap4	4117131	4117132	rs140068907	26891255	Jung ES	2016-02-18	Inflamm Bowel Dis	HLA-C*01 is a Risk Factor for Crohn's Disease.	Crohn's disease	275 Korean ancestry cases, 2,369 Korean ancestry controls	242 Korean ancestry cases, 1,066 Korean ancestry controls	6p21.32	HLA-DQB1, HLA-DQA2	rs140068907-C	0.08	1E-11		1.98	[1.62-2.41]	Affymetrix [3387207] (imputed)	N
616	chr6_mann_hap4	4117204	4117205	rs9275222	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	MTCO3P1	rs9275222-T	NR	7E-11		0.0204278	[0.014-0.027] unit increase	Affymetrix [323858] (imputed)	N
616	chr6_mann_hap4	4117204	4117205	rs9275222	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	MTCO3P1	rs9275222-T	NR	1E-9		0.0190432	[0.013-0.025] unit increase	Affymetrix [127266] (imputed)	N
616	chr6_mann_hap4	4117333	4117334	rs2856674	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	MTCO3P1	rs2856674-G	NR	7E-14		0.0297899	[0.022-0.038] unit decrease	Affymetrix [321169] (imputed)	N
616	chr6_mann_hap4	4117333	4117334	rs2856674	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling nervous	373,121 European ancestry individuals	NA	6p21.32	BRD2	rs2856674-A	0.144331	2E-10		6.41	z score increase	NR [10847151] (imputed)	N
616	chr6_mann_hap4	4117333	4117334	rs2856674	23603763	Liu JZ	2013-06-01	Nat Genet	Dense genotyping of immune-related disease regions identifies nine new risk loci for primary sclerosing cholangitis.	Primary sclerosing cholangitis	3,789 European ancestry cases, 25,079 European ancestry controls	NA	6p21.32	HLA-DQA	rs2856674-?	NR	1E-6	(conditioned on rs4143332 + HLA-DQA*01:03 + rs532098 +rs1794282 + rs9263964)			Illumina [140322] (imputed)	N
616	chr6_mann_hap4	4117526	4117527	rs3129718	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Hepatitis B	1,425 European ancestry cases, 218,180 European ancestry controls	NA	6p21.32	NR	rs3129718-?	NR	6E-6		0.3099	[0.17-0.45] unit decrease	Illumina [at least 560000] (imputed)	N
616	chr6_mann_hap4	4117566	4117567	rs9275224	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	MTCO3P1	rs9275224-G	NR	1E-13		0.0208122	[0.015-0.026] unit increase	Affymetrix [319769] (imputed)	N
616	chr6_mann_hap4	4117566	4117567	rs9275224	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	MTCO3P1	rs9275224-G	NR	1E-12		0.0199507	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
616	chr6_mann_hap4	4117566	4117567	rs9275224	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	MTCO3P1	rs9275224-G	NR	5E-16		0.023055	[0.017-0.029] unit increase	Affymetrix [321169] (imputed)	N
616	chr6_mann_hap4	4117566	4117567	rs9275224	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	6p21.32	HLA-DQB1, HLA-DQA1, HLA-DRB1	rs9275224-G	0.59	8E-14	(East Asian)	1.38		Illumina [> 1000000] (imputed)	N
616	chr6_mann_hap4	4117566	4117567	rs9275224	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	6p21.32	HLA-DQB1, HLA-DQA1, HLA-DRB1	rs9275224-G	0.51	6E-30		1.36	[NR]	Illumina [> 1000000] (imputed)	N
616	chr6_mann_hap4	4117566	4117567	rs9275224	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	6p21.32	HLA-DQB1, HLA-DQA1, HLA-DRB1	rs9275224-G	0.51	6E-18	(EA)	1.38	[NR]	Illumina [> 1000000] (imputed)	N
616	chr6_mann_hap4	4117585	4117586	rs35472814	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs35472814-C	0.2	1E-8		4.23	[3.24-5.52]	Illumina [NR] (imputed)	N
616	chr6_mann_hap4	4118270	4118271	rs2647006	30593799	Vergara C	2018-12-26	Gastroenterology	Multi-Ancestry Genome-Wide Association Study of Spontaneous Clearance of Hepatitis C Virus.	Hepatitis C (spontaneous viral clearance)	701 European ancestry cases, 1,035 European ancestry controls, 445 African American cases, 1,756 African American controls, 173 Hispanic ancestry cases, 313 Hispanic ancestry controls	NA	6p21.32	HLA-DQB1, HLA-DQA2	rs2647006-C	0.62	1E-21		1.79	NR (AA)	Illumina [15704341] (imputed)	N
616	chr6_mann_hap4	4118405	4118406	rs9275239	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	MTCO3P1	rs9275239-A	NR	2E-20		0.0286392	[0.023-0.035] unit decrease	Affymetrix [323123] (imputed)	N
616	chr6_mann_hap4	4118429	4118430	rs9275241	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs9275241-?	NR	2E-13				Affymetrix [~ 8270000] (imputed)	N
616	chr6_mann_hap4	4118631	4118632	rs9275245	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (mother's age at death or mother's attained age)	up to 699,000 individuals	NA	6p21.32	NR	rs9275245-A		3E-6				Illumina [458525]	N
616	chr6_mann_hap4	4118981	4118982	rs2858320	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	MTCO3P1	rs2858320-A	NR	9E-24		0.0285816	[0.023-0.034] unit decrease	Affymetrix [319769] (imputed)	N
616	chr6_mann_hap4	4118981	4118982	rs2858320	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	MTCO3P1	rs2858320-A	NR	8E-23		0.0279496	[0.022-0.034] unit decrease	Affymetrix [319769] (imputed)	N
616	chr6_mann_hap4	4118981	4118982	rs2858320	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	MTCO3P1	rs2858320-A	NR	9E-27		0.0308142	[0.025-0.036] unit decrease	Affymetrix [321169] (imputed)	N
616	chr6_mann_hap4	4118981	4118982	rs2858320	33119750	Vergara C	2020-10-29	J Infect Dis	A multi-ancestry sex stratified genome-wide association study of spontaneous clearance of hepatitis C virus.	Hepatitis C (spontaneous viral clearance)	239 African ancestry male cases, 1,184 African ancestry male controls, 206 African ancestry female cases, 572 African ancestry female controls, 489 European ancestry male cases, 703 European ancestry male controls, 212 European ancestry female cases, 332 European ancestry female controls, 91 Hispanic male cases, 197 Hispanic male controls, 82 Hispanic female cases, 116 Hispanic female controls	NA	6p21.32	NR	rs2858320-G	0.58	2E-12	(female)	1.96	[NR]	Illumina [5730693] (imputed)	N
616	chr6_mann_hap4	4119263	4119264	rs9275260	28698626	Lopez-Mejias R	2017-07-11	Sci Rep	A genome-wide association study suggests the HLA Class II region as the major susceptibility locus for IgA vasculitis.	Immunoglobulin A vasculitis	285 European ancestry cases, 1,006 European ancestry controls	NA	6p21.32	HLA-DQA1, HLA-DQB1	rs9275260-?		3E-9		1.7857143	[1.47-2.17]	Illumina [1909910] (imputed)	N
616	chr6_mann_hap4	4119684	4119685	rs79870097	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	6p21.32	NR	rs79870097-?	NR	6E-30	(conditional)			Affymetrix [15688218] (imputed)	N
616	chr6_mann_hap4	4119958	4119959	rs558121619	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Polyunsaturated fatty acid levels	115,006 European ancestry individuals	NA	6p21.32		rs558121619-A	0.542695	8E-10		0.0254897	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
616	chr6_mann_hap4	4119958	4119959	rs558121619	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-6 fatty acid levels	115,006 European ancestry individuals	NA	6p21.32		rs558121619-A	0.542695	3E-10		0.0262771	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
616	chr6_mann_hap4	4119958	4119959	rs558121619	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Linoleic acid levels	115,006 European ancestry individuals	NA	6p21.32		rs558121619-A	0.542695	2E-8		0.0235541	[0.015-0.032] unit decrease	NR [11722792] (imputed)	N
616	chr6_mann_hap4	4119969	4119970	rs2858317	33119750	Vergara C	2020-10-29	J Infect Dis	A multi-ancestry sex stratified genome-wide association study of spontaneous clearance of hepatitis C virus.	Hepatitis C (spontaneous viral clearance)	239 African ancestry male cases, 1,184 African ancestry male controls, 206 African ancestry female cases, 572 African ancestry female controls, 489 European ancestry male cases, 703 European ancestry male controls, 212 European ancestry female cases, 332 European ancestry female controls, 91 Hispanic male cases, 197 Hispanic male controls, 82 Hispanic female cases, 116 Hispanic female controls	NA	6p21.32	NR	rs2858317-A	0.63	1E-11	(male)	1.73	[NR]	Illumina [5730693] (imputed)	N
616	chr6_mann_hap4	4119969	4119970	rs2858317	31263063	Dufek S	2019-07-01	J Am Soc Nephrol	Genetic Identification of Two Novel Loci Associated with Steroid-Sensitive Nephrotic Syndrome.	Childhood steroid-sensitive nephrotic syndrome	422 European ancestry cases, 5,642 European ancestry controls	NA	6p21.32	HLA-DQB1	rs2858317-?	NR	4E-31	(conditioned on rs9273542)			Illumina [5216266] (imputed)	N
616	chr6_mann_hap4	4120033	4120034	rs9275263	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic hepatitis C infection	273 European ancestry cases, 351,740 European ancestry controls, 7,110 East Asian ancestry cases, 169,588 East Asian ancestry controls	NA	6p21.32		rs9275263-G	NR	2E-12		0.1228	[0.088-0.157] unit decrease	Affymetrix, Illumina [20457788] (imputed)	N
616	chr6_mann_hap4	4120114	4120115	rs9275267	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic hepatitis C infection	7,110 East Asian ancestry cases, 169,588 East Asian ancestry controls	NA	6p21.32		rs9275267-G	0.623579949	3E-12		0.1242382	[0.089-0.159] unit decrease	Illumina [13429570] (imputed)	N
616	chr6_mann_hap4	4120222	4120223	rs9275271	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR++ monocyte Absolute Count	3,579 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9275271-C	0.62317	2E-14		0.2356	[0.18-0.3] unit increase	Illumina [18377365] (imputed)	N
616	chr6_mann_hap4	4120235	4120236	rs9275272	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Prostate cancer	10,792 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs9275272-C	NR	2E-7		1.0948106	NR	Affymetrix [7846216] (imputed)	N
616	chr6_mann_hap4	4120609	4120610	rs9275281	28373541	Yang J	2017-04-03	Proc Natl Acad Sci U S A	Genetic signatures of high-altitude adaptation in Tibetans.	High altitude adaptation	3,008 Tibetan (founder/genetic isolate) individuals and 7,287 East Asian individuals	NA	6p21.32	HLA-DQB1	rs9275281-G	0.365	1E-10				Illumina [7300000] (imputed)	N
616	chr6_mann_hap4	4120610	4120611	rs114169440	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs114169440-A	0.2	2E-8		4.08	[3.13-5.31]	Illumina [NR] (imputed)	N
616	chr6_mann_hap4	4120663	4120664	rs9275282	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs9275282-?	NR	1E-14				Affymetrix [~ 8270000] (imputed)	N
616	chr6_mann_hap4	4120847	4120848	rs113523948	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs113523948-C	0.063	3E-21	(conditional)	0.578	[0.46-0.69]	Illumina [11270530] (imputed)	N
616	chr6_mann_hap4	4120948	4120949	rs112927854	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Low density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	6p21.32	HLA-DQB1, HLA-DQA2	rs112927854-?		4E-9		0.0728	[0.049-0.097] unit decrease	Illumina [31500000] (imputed)	N
616	chr6_mann_hap4	4120978	4120979	rs9275292	27286809	Ligthart S	2016-06-10	BMC Genomics	Bivariate genome-wide association study identifies novel pleiotropic loci for lipids and inflammation.	C-reactive protein levels or LDL-cholesterol levels (pleiotropy)	65,000 individuals (C-reactive protein), 95,454 individuals (LDL-cholesterol)	NA	6p21.32	HLA-DQB1	rs9275292-A	NR	3E-8				NR [2501749] (imputed)	N
616	chr6_mann_hap4	4121086	4121087	rs13205804	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	6p21.32	intergenic	rs13205804-A	0.8815	3E-21		0.0391	[0.031-0.047] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
616	chr6_mann_hap4	4121319	4121320	rs3129720	23472185	Mero IL	2013-03-05	PLoS One	Oligoclonal band status in Scandinavian multiple sclerosis patients is associated with specific genetic risk alleles.	Multiple sclerosis (OCB status)	1,367 European ancestry OCB positive cases, 161 European ancestry OCB negative cases, 428 European ancestry controls	NA	6p21.32	HLA-DQB1	rs3129720-?	NR	5E-15	(OCB positive vs. controls)	1.91	[1.62-2.24]	Illumina [495970]	N
616	chr6_mann_hap4	4121319	4121320	rs3129720	22493691	Eriksson N	2012-04-06	PLoS One	Novel associations for hypothyroidism include known autoimmune risk loci.	Hypothyroidism	3,736 European ancestry cases, 35,546 European ancestry controls	NA	6p21.32	HLA-DQA2, HLA-DQB1, HLA-DRB9, HLA-DRB5, HLA-DRB1, HLA-DQA1	rs3129720-C	0.764	5E-7		1.16	(1.10-1.23)	Illumina [870065]	N
616	chr6_mann_hap4	4121452	4121453	rs17427445	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs17427445-A	0.2	1E-8		4.23	[3.24-5.52]	Illumina [NR] (imputed)	N
616	chr6_mann_hap4	4121540	4121541	rs6457617	31050781	Zhao SX	2019-05-03	JAMA Netw Open	Assessment of Molecular Subtypes in Thyrotoxic Periodic Paralysis and Graves Disease Among Chinese Han Adults: A Population-Based Genome-Wide Association Study.	Thyrotoxic hypokalemic periodic paralysis and Graves disease	171 Han Chinese ancestry cases, 2,160 Han Chinese ancestry controls	362 Han Chinese ancestry cases, 1,089 Han Chinese ancestry controls	6p21.32	HLA-DQB1, HLA-DQA2	rs6457617-?	0.47	2E-17		1.74	[1.53-1.97]	Illumina [2752055] (imputed)	N
616	chr6_mann_hap4	4121540	4121541	rs6457617	25616667	Goris A	2015-01-22	Brain	Genetic variants are major determinants of CSF antibody levels in multiple sclerosis.	Immunoglobulin G index levels in multiple sclerosis	773 European ancestry Individuals, 165 Individuals	2,072 Individuals	6p21.32	HLA-DQA1	rs6457617-A	NR	7E-17		0.127	[NR] unit decrease	NR [485236]	N
616	chr6_mann_hap4	4121540	4121541	rs6457617	21841780	Chu X	2011-08-14	Nat Genet	A genome-wide association study identifies two new risk loci for Graves' disease.	Graves' disease	1,468 Chinese ancestry cases, 1,490 Chinese ancestry controls	3,994 Chinese ancestry cases, 3,510 Chinese ancestry controls	6p21.32	HLA, DRB1, DQA1, DQB1	rs6457617-T	0.45	7E-33		1.4	[1.32-1.48]	Illumina [486049]	N
616	chr6_mann_hap4	4121540	4121541	rs6457617	21750679	Allanore Y	2011-07-07	PLoS Genet	Genome-wide scan identifies TNIP1, PSORS1C1, and RHOB as novel risk loci for systemic sclerosis.	Systemic sclerosis	564 European ancestry cases, 1,776 European ancestry controls	1,682 European ancestry cases, 3,926 European ancestry controls	6p21.32	HLA, DQB1	rs6457617-T	0.50	2E-37		1.61	[1.49-1.72]	Illumina [489814]	N
616	chr6_mann_hap4	4121540	4121541	rs6457617	20383147	Radstake TR	2010-04-11	Nat Genet	Genome-wide association study of systemic sclerosis identifies CD247 as a new susceptibility locus.	Systemic sclerosis	2,296 European ancestry cases, 5,171 European ancestry controls	2,753 European ancestry cases, 4,569 European ancestry controls	6p21.32	HLA-DQB1	rs6457617-?	0.53	4E-17		1.37	[1.28-1.47]	Illumina [279621]	N
616	chr6_mann_hap4	4121540	4121541	rs6457617	18668548	Julia A	2008-08-01	Arthritis Rheum	Genome-wide association study of rheumatoid arthritis in the Spanish population: KLF12 as a risk locus for rheumatoid arthritis susceptibility.	Rheumatoid arthritis	400 European ancestry cases, 400 European ancestry controls	410 European ancestry cases, 394 European ancestry controls	6p21.32	HLA-DQA2, HLA-DQA1	rs6457617-?	NR	1E-9				Illumina [299918]	N
616	chr6_mann_hap4	4121540	4121541	rs6457617	17554300	Wellcome Trust Case Control Consortium	2007-06-07	Nature	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Rheumatoid arthritis	1,860 European ancestry cases, 2,938 European ancestry controls	NA	6p21.32	MHC	rs6457617-T	0.49	5E-75		2.36	[1.97-2.84]	Affymetrix [469557]	N
616	chr6_mann_hap4	4121625	4121626	rs34677551	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs34677551-C	0.2	1E-8		4.23	[3.24-5.52]	Illumina [NR] (imputed)	N
616	chr6_mann_hap4	4121643	4121644	rs34392107	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	6p21.32	HLA-DQB1	rs34392107-G	0.883508	6E-45		0.0459707	[0.04-0.052] unit decrease	Affymetrix [NR] (imputed)	N
616	chr6_mann_hap4	4121688	4121689	rs6457620	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	6p21.32	HLA locus	rs6457620-C	0.51	2E-16		0.029	[NR] unit decrease	Affymetrix, Illumina [2834208] (imputed)	N
616	chr6_mann_hap4	4121688	4121689	rs6457620	18794853	Raychaudhuri S	2008-09-14	Nat Genet	Common variants at CD40 and other loci confer risk of rheumatoid arthritis.	Rheumatoid arthritis	3,393 European ancestry cases, 12,460 European ancestry controls	3,929 European ancestry cases, 5,807 European ancestry controls	6p21.32	HLA-DRB1	rs6457620-?	0.50	4E-186		2.55	[2.40-2.71]	Affymetrix, Illumina [at least 315971] (imputed)	N
616	chr6_mann_hap4	4121727	4121728	rs35900855	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs35900855-G	0.2	1E-8		4.23	[3.24-5.52]	Illumina [NR] (imputed)	N
616	chr6_mann_hap4	4122021	4122022	rs7745040	29534301	Nishida N	2018-03-13	Hepatology	Key HLA-DRB1-DQB1 haplotypes and role of the BTNL2 gene for response to a hepatitis B vaccine.	Response to hepatitis B vaccine	107 Japanese ancestry low responder individuals, 351 Japanese ancestry intermediate responder individuals, 735 Japanese ancestry high responder individuals	NA	6p21.32	HLA-DQA2	rs7745040-?		2E-10		0.162	unit decrease	Affymetrix [427664]	N
616	chr6_mann_hap4	4122147	4122148	rs2647012	33649182	Penova M	2021-03-01	Proc Natl Acad Sci U S A	Genome wide association study of HTLV-1-associated myelopathy/tropical spastic paraparesis in the Japanese population.	HTLV-1 associated myelopathy	731 Japanese ancestry cases, 846 Japanese ancestry controls	NA	6p21.32		rs2647012-T	0.17	5E-7		0.56	[0.45-0.7]	Illumina [126394]	N
616	chr6_mann_hap4	4122147	4122148	rs2647012	24925725	Chung SA	2014-06-12	J Am Soc Nephrol	Lupus nephritis susceptibility loci in women with systemic lupus erythematosus.	Lupus nephritis in systemic lupus erythematosus	588 European ancestry cases, 1,412 European ancestry controls	NA	6p21.32	intergenic	rs2647012-?	NR	3E-7	(Additive)	1.52	[1.3-1.75]	Affymetrix, Illumina [1621689] (imputed)	N
616	chr6_mann_hap4	4122147	4122148	rs2647012	21533074	Smedby KE	2011-04-21	PLoS Genet	GWAS of follicular lymphoma reveals allelic heterogeneity at 6p21.32 and suggests shared genetic susceptibility with diffuse large B-cell lymphoma.	Follicular lymphoma	379 European ancestry cases, 791 European ancestry controls	1,049 European ancestry cases, 3,952 European ancestry controls	6p21.32	HLA-DQB1	rs2647012-G	0.56	2E-21		1.56	[1.43-1.72]	Illumina [298168]	N
616	chr6_mann_hap4	4122147	4122148	rs2647012	21408207	Chung SA	2011-03-03	PLoS Genet	Differential genetic associations for systemic lupus erythematosus based on anti-dsDNA autoantibody production.	Systemic lupus erythematosus	811 anti-dsDNA positive European ancestry cases, 906 anti-dsDNA negative European ancestry cases, 4,813 European ancestry controls	NA	6p21.32	HLA-DQA2, HLA-DQA1	rs2647012-A	0.44	8E-6	(case-only)	1.38	[1.20-1.59]	Illumina [421318] (imputed)	N
616	chr6_mann_hap4	4122317	4122318	rs115255544	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs115255544-G	0.2	1E-8		4.23	[3.24-5.52]	Illumina [NR] (imputed)	N
616	chr6_mann_hap4	4122480	4122481	rs116303320	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Total cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	6p21.32	HLA-DQB1, HLA-DQA2	rs116303320-?		5E-13		0.0603	[0.044-0.077] unit decrease	Illumina [31500000] (imputed)	N
616	chr6_mann_hap4	4122569	4122570	rs2647003	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.32	NR	rs2647003-?	NR	3E-13				Affymetrix [~ 8270000] (imputed)	N
616	chr6_mann_hap4	4122649	4122650	rs9357152	21896673	Chen D	2011-09-10	Hum Mol Genet	Genome-wide association study of HPV seropositivity.	HPV seropositivity	1,286 European ancestry lung cancer cases, 679 European ancestry head and neck cancer cases, 811 European ancestry kidney cancer cases, 2,035 European ancestry controls	1,307 Hispanic head and neck cancer cases, 1,037 Hispanic controls		HLA-DQB1	rs9357152-G	0.33	1E-14				Illumina [316015]	N
616	chr6_mann_hap4	4122804	4122805	rs17206126	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs17206126-T	0.972723	3E-12		0.087804	[0.063-0.112] unit decrease	NR [11722792] (imputed)	N
616	chr6_mann_hap4	4122814	4122815	rs17212462	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs17212462-T	0.2	1E-8		4.23	[3.24-5.52]	Illumina [NR] (imputed)	N
616	chr6_mann_hap4	4122939	4122940	rs17212483	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs17212483-T	0.2	9E-9		4.27	[3.27-5.58]	Illumina [NR] (imputed)	N
616	chr6_mann_hap4	4123109	4123110	rs10484561	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs10484561-G	0.2	2E-8		4.22	[3.22-5.52]	Illumina [NR] (imputed)	N
616	chr6_mann_hap4	4123109	4123110	rs10484561	20639881	Conde L	2010-07-18	Nat Genet	Genome-wide association study of follicular lymphoma identifies a risk locus at 6p21.32.	Follicular lymphoma	681 European ancestry cases, 750 European ancestry controls	up to 3,164 European ancestry cases, 6,208 European ancestry controls	6p21.32	HLA-DQB1	rs10484561-G	0.11	1E-29	(FL)	1.95	[1.72-2.22]	Illumina [312768]	N
616	chr6_mann_hap4	4123376	4123377	rs17212553	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs17212553-T	0.2	1E-8		4.23	[3.24-5.52]	Illumina [NR] (imputed)	N
616	chr6_mann_hap4	4123989	4123990	rs9275319	23242368	Jiang DK	2012-12-16	Nat Genet	Genetic variants in STAT4 and HLA-DQ genes confer risk of hepatitis B virus-related hepatocellular carcinoma.	Hepatocellular carcinoma in hepatitis B infection	1,161 Chinese ancestry cases, 1,353 Chinese ancestry controls	4,319 Chinese ancestry cases, 4,966 Chinese ancestry controls	6p21.32	HLA-DQ	rs9275319-A	0.88	3E-17		1.49	[1.36-1.63]	Illumina [1672517] (imputed)	N
616	chr6_mann_hap4	4124220	4124221	rs1794282	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.32	BTNL2, XXbac-BPG246D15.9, XXbac-BPG154L12.5, XXbac-BPG154L12.4, C6orf10, HNRNPA1P2, RNU6-603P, HLA-DRA, HLA-DRB9, HLA-DOB	rs1794282-T	0.08080808	3E-19	(EA, MHC class I polypeptide-related sequence B)	0.7066	[0.56-0.86] unit decrease	Affymetrix [509946]	N
616	chr6_mann_hap4	4124354	4124355	rs9275326	28892059	Chang D	2017-09-11	Nat Genet	A meta-analysis of genome-wide association studies identifies 17 new Parkinson's disease risk loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	5,851 European ancestry cases, 5,866 European ancestry controls	6p21.32	HLA-DRB6, HLA-DQA1	rs9275326-C	0.895	1E-13		1.1764705	[1.12-1.22]	Illumina [11933700] (imputed)	N
616	chr6_mann_hap4	4124354	4124355	rs9275326	25064009	Nalls MA	2014-07-27	Nat Genet	Large-scale meta-analysis of genome-wide association data identifies six new risk loci for Parkinson's disease.	Parkinson's disease	13,708 European ancestry cases, 95,282 European ancestry controls	5,353 European ancestry cases, 5,551 European ancestry controls	6p21.32	HLA-DQB	rs9275326-C	0.906	1E-12		1.21	[1.16-1.26]	Illumina [7893274] (imputed)	N
616	chr6_mann_hap4	4124761	4124762	rs17427564	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs17427564-C	0.2	1E-8		4.23	[3.24-5.52]	Illumina [NR] (imputed)	N
616	chr6_mann_hap4	4124801	4124802	rs9275334	26272072	Jiang X	2015-08-13	Rheumatology (Oxford)	An Immunochip-based interaction study of contrasting interaction effects with smoking in ACPA-positive versus ACPA-negative rheumatoid arthritis.	ACPA-positive rheumatoid arthritis (smoking interaction)	340 European ancestry never-smoker cases, 493 European ancestry ever-smoker cases, 746 European ancestry never-smoker controls, 994 European ancestry ever-smoker controls	187 European ancestry never-smoker cases, 421 European ancestry ever-smoker cases, 461 European ancestry never-smoker controls, 447 European ancestry ever-smoker controls	6p21.32	NR	rs9275334-?	NR	2E-6	(adjusted for HLA shared epitope)	1.724138	[1.22-2.94]	Illumina [133648] (imputed)	N
616	chr6_mann_hap4	4124865	4124866	rs1794280	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hyperthyroidism	3,557 European ancestry cases, 456,942 European ancestry controls, 994 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	6p21.32		rs1794280-T	NR	2E-44		0.5463	[0.47-0.62] unit increase	Affymetrix, Illumina [25841580] (imputed)	N
616	chr6_mann_hap4	4124865	4124866	rs1794280	30854688	Wang C	2019-03-10	Hepatology	Genome Wide Association Studies of Specific Antinuclear Autoantibody Sub-phenotypes in Primary Biliary Cholangitis.	Anti-sp100 seropositivity in primary biliary cholangitis	211 Han Chinese ancestry cases, 711 Han Chinese ancestry controls	234 Han Chinese ancestry cases, 1,018 Han Chinese ancestry controls	6p21.32	NR	rs1794280-T	0.181	6E-28		3.89	[3.05-4.96]	Illumina [794531]	N
616	chr6_mann_hap4	4125058	4125059	rs17427599	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (anti-inflammatory and antirheumatic products, non-steroids)	29,694 East Asian ancestry cases, 149,032 East Asian ancestry controls	NA	6p21.32		rs17427599-T	0.278563857	1E-13		0.07483624	[0.055-0.095] unit increase	Illumina [13429980] (imputed)	N
616	chr6_mann_hap4	4125167	4125168	rs1794514	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Autoimmune hepatitis	821 European ancestry cases, 484,413 European ancestry controls, 85 East Asian ancestry cases, 166,529 East Asian ancestry controls	NA	6p21.32		rs1794514-C	NR	6E-14		0.5013	[0.37-0.63] unit increase	Affymetrix, Illumina [25843756] (imputed)	N
616	chr6_mann_hap4	4125200	4125201	rs188230545	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	124,341 East Asian ancestry individuals	NA	6p21.32		rs188230545-T	0.154874	1E-8		0.0301327	[0.02-0.04] unit increase	Illumina [13476323] (imputed)	N
616	chr6_mann_hap4	4125214	4125215	rs3104394	32534018	Liu X	2020-06-10	Brain Behav Immun	Genetic factors underlying the bidirectional relationship between autoimmune and mental disorders - findings from a Danish population-based study.	Autoimmune traits	1,383 Danish ancestry cases, 62,656 Danish ancestry controls	NA	6p21.32	NR	rs3104394-G	0.16	3E-20		0.57	[0.50-0.65]	NR [7721839] (imputed)	N
616	chr6_mann_hap4	4125289	4125290	rs2133037	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	IgG levels	15,536 Icelandic ancestry individuals	2,158 Swedish ancestry individuals	6p21.32	HLA-DQB1	rs2133037-A	0.0524	2E-14		0.19	NR SD units decrease	Illumina [21568490] (imputed)	N
616	chr6_mann_hap4	4125356	4125357	rs9275349	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	Systemic lupus erythematosus	1,639 East Asian ancestry cases, 2,410 East Asian ancestry controls	NA			rs9275349-C	NR	5E-25		0.5726	[0.46-0.68] unit decrease	Illumina [NR] (imputed)	N
616	chr6_mann_hap4	4125430	4125431	rs2856723	28921602	Lee MH	2017-09-16	Hepatology	Human leukocyte antigen variants and risk of hepatocellular carcinoma modified by hepatitis C virus genotypes: A genome-wide association study.	Hepatocellular carcinoma in hepatitis C infection	502 Chinese ancestry cases, 749 Chinese ancestry controls	669 Chinese ancestry cases, 429 Chinese ancestry controls	6p21.32	HLA-DQB1	rs2856723-?		3E-43		2.68	[2.32-3.09]	Affymetrix [576032]	N
616	chr6_mann_hap4	4125563	4125564	rs9275358	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p21.32	HLA-DQB1	rs9275358-G	0.475	3E-7		0.083	[0.052-0.114] unit decrease	Affymetrix, Illumina [7374092] (imputed)	N
616	chr6_mann_hap4	4125578	4125579	rs2647044	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	6p21.32	BRD2, BTNL2, C6orf10, HCG23, HLA-DMA, HLA-DMB, HLA-DOA, HLA-DOB, HLA-DPA1, HLA-DQA1, HLA-DQA2, HLA-DQB1, HLA-DQB2, HLA-DRA, HLA-DRB1, HLA-DRB5, HLA-DRB6, LOC100294145, NOTCH4, PSMB8, PSMB9, TAP1, TAP2, TAPSAR1	rs2647044-A	0.14736	4E-15		1.1522182	[1.12-1.19]	Affymetrix [8274727] (imputed)	N
616	chr6_mann_hap4	4125578	4125579	rs2647044	21946350	Soler Artigas M	2011-09-25	Nat Genet	Genome-wide association and large-scale follow up identifies 16 new loci influencing lung function.	Pulmonary function	48,201 European ancestry individuals	46,411 European ancestry individuals	6p21.32	HLA-DQB1	rs2647044-G	NR	6E-6	(FEV1/FVC)	0.044	[0.024-0.064] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
616	chr6_mann_hap4	4125578	4125579	rs2647044	17632545	Hakonarson H	2007-07-15	Nature	A genome-wide association study identifies KIAA0350 as a type 1 diabetes gene.	Type 1 diabetes	467 European ancestry trios, 561 European ancestry cases, 1,143 European ancestry controls	390 European ancestry trios, 1,333 European ancestry cases from 549 families	6p21.32	HLA-DRB1	rs2647044-A	0.13	1E-16		8.3	[6.97-9.89]	Illumina [543071]	N
616	chr6_mann_hap4	4125632	4125633	rs36030018	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs36030018-C	0.109	3E-36	(conditional)	1.586	[1.51-1.66]	Illumina [11270530] (imputed)	N
616	chr6_mann_hap4	4125699	4125700	rs2856721	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	6p21.32		rs2856721-C	0.467255784	1E-9		0.056245904	[0.038-0.074] unit decrease	Illumina [13429769] (imputed)	N
616	chr6_mann_hap4	4125699	4125700	rs2856721	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	46,511 Asian ancestry cases, 169,776 Asian ancestry controls	NA	6p21.32	NR	rs2856721-C	0.4659	5E-10		0.0572	[0.039-0.075] unit decrease	Affymetrix, Illumina [1077427] (imputed)	N
616	chr6_mann_hap4	4125769	4125770	rs2647045	23349640	Vijai J	2013-01-17	PLoS Genet	Susceptibility loci associated with specific and shared subtypes of lymphoid malignancies.	Lymphoma	275 Follicular non-Hodgkin's Lymphoma cases, 269 diffuse large B-cell non-Hodgkin's Lymphoma cases, 198 other non-Hodgkin's Lymphoma cases, 202 Hodgkin's Lymphoma cases, 4,044 controls	202 European ancestry Follicular non-Hodgkin's Lymphoma cases, 367 European ancestry diffuse large B-cell non-Hodgkin's Lymphoma cases, 577 European ancestry other non-Hodgkin's Lymphoma cases, 99 European ancestry Hodgkin's Lymphoma cases, 2,596 European ancestry controls	6p21.32	HLA-DQA2, HLA-DQB1	rs2647045-?	NR	4E-10	(FL)	1.69	[NR]	Affymetrix [530583]	N
616	chr6_mann_hap4	4125992	4125993	rs2858310	27286809	Ligthart S	2016-06-10	BMC Genomics	Bivariate genome-wide association study identifies novel pleiotropic loci for lipids and inflammation.	C-reactive protein levels or total cholesterol levels (pleiotropy)	65,000 individuals (C-reactive protein), 100,184 individuals (total cholesterol)	NA	6p21.32	HLA-DQB1	rs2858310-A	NR	4E-12				NR [2501549] (imputed)	N
616	chr6_mann_hap4	4126005	4126006	rs2647046	23349640	Vijai J	2013-01-17	PLoS Genet	Susceptibility loci associated with specific and shared subtypes of lymphoid malignancies.	Lymphoma	275 Follicular non-Hodgkin's Lymphoma cases, 269 diffuse large B-cell non-Hodgkin's Lymphoma cases, 198 other non-Hodgkin's Lymphoma cases, 202 Hodgkin's Lymphoma cases, 4,044 controls	202 European ancestry Follicular non-Hodgkin's Lymphoma cases, 367 European ancestry diffuse large B-cell non-Hodgkin's Lymphoma cases, 577 European ancestry other non-Hodgkin's Lymphoma cases, 99 European ancestry Hodgkin's Lymphoma cases, 2,596 European ancestry controls	6p21.32	HLA-DQA2, HLA-DQB1	rs2647046-?	NR	2E-6	(NHL)	1.25	[1.14-1.37]	Affymetrix [530583]	N
616	chr6_mann_hap4	4126108	4126109	rs3135002	29404672	Roshandel D	2018-02-05	Diabetologia	Meta-genome-wide association studies identify a locus on chromosome 1 and multiple variants in the MHC region for serum C-peptide in type 1 diabetes.	Random C-peptide levels in type I diabetes	1,497 European ancestry individuals	NA	6p21.32	MHC	rs3135002-A	0.03	3E-8				Illumina [8320327] (imputed)	N
616	chr6_mann_hap4	4126108	4126109	rs3135002	29404672	Roshandel D	2018-02-05	Diabetologia	Meta-genome-wide association studies identify a locus on chromosome 1 and multiple variants in the MHC region for serum C-peptide in type 1 diabetes.	C-peptide levels in type I diabetes	3,479 European ancestry individuals	NA	6p21.32	MHC	rs3135002-A	0.03	7E-8				Illumina [7988630] (imputed)	N
616	chr6_mann_hap4	4126687	4126688	rs1612904	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of HDL particles	115,082 European ancestry individuals	NA	6p21.32		rs1612904-C	0.38135	1E-10		0.0256884	[0.018-0.033] unit decrease	NR [11722792] (imputed)	N
616	chr6_mann_hap4	4126687	4126688	rs1612904	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Perceived unattractiveness to mosquitoes	16,576 European ancestry individuals	NA	6p21.32	intergenic	rs1612904-C	NR	1E-8		0.136111	[0.089-0.183] unit increase	Illumina [7433384] (imputed)	N
616	chr6_mann_hap4	4126687	4126688	rs1612904	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.32	Intergenic	rs1612904-C	NR	1E-13		0.0245272	[0.018-0.031] unit increase	Illumina [13520550] (imputed)	N
616	chr6_mann_hap4	4126826	4126827	rs9275390	21779181	Gorlova O	2011-07-14	PLoS Genet	Identification of novel genetic markers associated with clinical phenotypes of systemic sclerosis through a genome-wide association strategy.	Systemic sclerosis	2,296 European ancestry cases, 5,172 European ancestry controls	3,175 European ancestry cases, 4,210 European ancestry controls	6p21.32	HLA-DQB1	rs9275390-?	0.75	1E-7	(ATA positive)	1.61	[1.35-1.92]	Illumina [NR] (imputed)	N
616	chr6_mann_hap4	4126826	4126827	rs9275390	21779181	Gorlova O	2011-07-14	PLoS Genet	Identification of novel genetic markers associated with clinical phenotypes of systemic sclerosis through a genome-wide association strategy.	Systemic sclerosis	2,296 European ancestry cases, 5,172 European ancestry controls	3,175 European ancestry cases, 4,210 European ancestry controls	6p21.32	HLA-DQB1	rs9275390-?	0.25	3E-54	(ACA positive)	2.38	[2.13-2.67]	Illumina [NR] (imputed)	N
616	chr6_mann_hap4	4127043	4127044	rs11752643	31213470	Moon JY	2019-06-18	Diabetes Care	A Genome-Wide Association Study Identifies Blood Disorder-Related Variants Influencing Hemoglobin A1c With Implications for Glycemic Status in U.S. Hispanics/Latinos.	Glycated hemoglobin levels	9,636 Hispanic/Latino individuals	4,777 Hispanic/Latino individuals	6p21.32	HLA-DQA2	rs11752643-T	0.017	2E-6		0.096	[0.061-0.131] % increase	Illumina [11510031] (imputed)	N
616	chr6_mann_hap4	4127043	4127044	rs11752643	21971053	Takeuchi F	2011-10-05	Eur J Hum Genet	Genome-wide association study of coronary artery disease in the Japanese.	Coronary heart disease	806 Japanese ancestry cases, 1,337 Japanese ancestry controls	3,593 Japanese ancestry cases, 6,335 Japanese ancestry controls	6p21.32	HLA, DRB-DQB	rs11752643-T	0.06	5E-7		1.26	[1.15-1.38]	Illumina [451382]	N
616	chr6_mann_hap4	4127437	4127438	rs2647050	26030696	Cho MH	2015-06-01	Am J Respir Crit Care Med	A Genome-Wide Association Study of Emphysema and Airway Quantitative Imaging Phenotypes.	Emphysema imaging phenotypes	5,385 European ancestry chronic obstructive pulmonary disease cases, 901 African American chronic obstructive pulmonary disease cases, 3,613 European ancestry controls, 2,132 African American controls	NA	6p21.32	HLA-DQB1	rs2647050-T	NR	1E-6	(Perc15, All)	1.6	[0.66-2.54] unit increase	Illumina [7600000] (imputed)	N
616	chr6_mann_hap4	4127625	4127626	rs9275406	23918589	Negi S	2013-12-01	Arthritis Rheum	A genome-wide association study reveals ARL15, a novel non-HLA susceptibility gene for rheumatoid arthritis in North Indians.	Rheumatoid arthritis	706 North Indian ancestry cases, 761 North Indian ancestry controls	927 North Indian ancestry cases, 1,148 North Indian ancestry controls	6p21.32	HLA-DQA2, HLA-DQB1, C6orf10, HLA-DQA1	rs9275406-T	0.17	3E-12		2.1	[1.72-2.68]	Illumina [559348]	N
616	chr6_mann_hap4	4127806	4127807	rs3135001	32276964	Shete S	2020-04-10	Cancer Res	A genome-wide association study identifies two novel susceptible regions for squamous cell carcinoma of the head and neck.	Head and neck squamous cell carcinoma	2,171 European ancestry cases, 4,493 European ancestry controls	5,205 European ancestry cases, 3,232 European ancestry controls	6p21.32	HLA-DQB1	rs3135001-C	0.79	1E-16		1.2987013	[1.22-1.37]	Illumina [7858089] (imputed)	N
616	chr6_mann_hap4	4127917	4127918	rs2856718	25802187	Jiang DK	2015-04-28	Hepatology	Genetic variants in five novel loci including CFB and CD40 predispose to chronic hepatitis B.	Chronic hepatitis B infection	2,514 Chinese ancestry cases, 1,130 Chinese ancestry controls	6,600 Chinese ancestry cases, 8,127 Chinese ancestry controls	6p21.32	HLA-DQB1	rs2856718-C	0.55	7E-28		1.28	[1.22-1.33]	Illumina [3680900] (imputed)	N
616	chr6_mann_hap4	4127917	4127918	rs2856718	23760081	Kim YJ	2013-06-10	Hum Mol Genet	A genome-wide association study identified new variants associated with the risk of chronic hepatitis B.	Chronic hepatitis B infection	400 Korean ancestry cases, 1,000 Korean ancestry controls	971 Korean ancestry cases, 1,938 Korean ancestry controls	6p21.32	HLA-DQ	rs2856718-?	NR	2E-24		1.6	[1.46-1.75]	Illumina [719265]	N
616	chr6_mann_hap4	4127917	4127918	rs2856718	21750111	Mbarek H	2011-07-12	Hum Mol Genet	A genome-wide association study of chronic hepatitis B identified novel risk locus in a Japanese population.	Hepatitis B	458 Japanese ancestry cases, 2,056 Japanese ancestry controls	2,209 Japanese ancestry cases, 4,440 Japanese ancestry controls	6p21.32	HLA-DQB1	rs2856718-A	0.48	4E-37		1.56	[1.45-1.67]	Illumina [423627]	N
616	chr6_mann_hap4	4127970	4127971	rs2856717	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	6p21.32	HLA-DQB1, HLA-DQA1, HLA-DRB1	rs2856717-G	0.77	5E-10	(East Asian)	1.38	[NR]	Illumina [> 1000000] (imputed)	N
616	chr6_mann_hap4	4127970	4127971	rs2856717	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	6p21.32	HLA-DQB1, HLA-DQA1, HLA-DRB1	rs2856717-G	0.62	5E-8	(EA)	1.21	[NR]	Illumina [> 1000000] (imputed)	N
616	chr6_mann_hap4	4127970	4127971	rs2856717	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	6p21.32	HLA-DQB1, HLA-DQA1, HLA-DRB1	rs2856717-G	0.62	1E-15		1.27	[NR]	Illumina [> 1000000] (imputed)	N
616	chr6_mann_hap4	4128495	4128496	rs34492195	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs34492195-A	0.2	1E-8		4.23	[3.24-5.52]	Illumina [NR] (imputed)	N
616	chr6_mann_hap4	4128559	4128560	rs2647051	30593799	Vergara C	2018-12-26	Gastroenterology	Multi-Ancestry Genome-Wide Association Study of Spontaneous Clearance of Hepatitis C Virus.	Hepatitis C (spontaneous viral clearance)	701 European ancestry cases, 1,035 European ancestry controls	NA	6p21.32	HLA-DQB1, HLA-DQA2	rs2647051-C	0.64	1E-9		1.79	NR	Illumina [8968220] (imputed)	N
616	chr6_mann_hap4	4128640	4128641	rs9275428	28706201	Wei WH	2017-07-13	Sci Rep	Genotypic variability based association identifies novel non-additive loci DHCR7 and IRF4 in sero-negative rheumatoid arthritis.	Sero-negative rheumatoid arthritis	3,323 European ancestry cases, 15,785 European ancestry controls	NA	6p21.32	HLA-DQB1	rs9275428-?	NR	2E-24				Illumina [107144]	N
616	chr6_mann_hap4	4128765	4128766	rs13192471	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Non-melanoma skin cancer	5,912 European ancestry cases, 181,740 European ancestry controls		6p21.32	NR	rs13192471-T	NR	7E-8		1.1493434	[1.09-1.21]	Affymetrix [5734850] (imputed)	N
616	chr6_mann_hap4	4128765	4128766	rs13192471	20453841	Kochi Y	2010-05-09	Nat Genet	A regulatory variant in CCR6 is associated with rheumatoid arthritis susceptibility.	Rheumatoid arthritis	2,303 Japanese ancestry cases, 3,380 Japanese ancestry controls	4,768 Japanese ancestry cases, 17,359 Japanese ancestry controls	6p21.32	HLA-DRB1	rs13192471-G	0.22	2E-58		1.97	[1.82-2.14]	Illumina [393217]	N
616	chr6_mann_hap4	4128869	4128870	rs1794511	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	IgD on IgD+ CD24+ B cell	3,656 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs1794511-G	0.25863	7E-13		0.2439	[0.18-0.31] unit decrease	Illumina [18238197] (imputed)	N
616	chr6_mann_hap4	4128910	4128911	rs1794275	22197929	Yu XQ	2011-12-25	Nat Genet	A genome-wide association study in Han Chinese identifies multiple susceptibility loci for IgA nephropathy.	IgA nephropathy	1,434 Han Chinese ancestry cases, 4,270 Han Chinese ancestry controls	2,703 Han Chinese ancestry cases, 3,464 Han Chinese ancestry controls	6p21.32	HLA-DQA/B	rs1794275-A	0.15	3E-13		1.3	[1.21-1.39]	Illumina [444882]	N
616	chr6_mann_hap4	4129634	4129635	rs6907732	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on CD33dim HLA DR+ CD11b+	1,634 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs6907732-G	0.45576	3E-8		0.2461	[0.16-0.33] unit increase	Illumina [16998734] (imputed)	N
616	chr6_mann_hap4	4129740	4129741	rs3134995	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	6p21.32	HLA-DQB1, HLA-DQA2	rs3134995-T	0.242	4E-26		0.0648904	[0.053-0.077] unit decrease	Illumina [13520550] (imputed)	N
616	chr6_mann_hap4	4130291	4130292	rs9275477	34873335	van Rheenen W	2021-12-06	Nat Genet	Common and rare variant association analyses in amyotrophic lateral sclerosis identify 15 risk loci with distinct genetic architectures and neuron-specific biology.	Amyotrophic lateral sclerosis	27,205 European ancestry cases, 110,881 European ancestry controls, 2,407 East Asian ancestry cases, 11,775 East Asian ancestry controls	NA			rs9275477-C	NR	4E-12		0.142	[0.1-0.18] unit decrease	Illumina [10461755] (imputed)	N
616	chr6_mann_hap4	4130291	4130292	rs9275477	34873335	van Rheenen W	2021-12-06	Nat Genet	Common and rare variant association analyses in amyotrophic lateral sclerosis identify 15 risk loci with distinct genetic architectures and neuron-specific biology.	Amyotrophic lateral sclerosis	27,205 European ancestry cases, 110,881 European ancestry controls	NA	6p21.32		rs9275477-C	0.096	6E-12		0.143	[0.1-0.18] unit decrease	Illumina [10461755] (imputed)	N
616	chr6_mann_hap4	4131224	4131225	rs9275495	26272072	Jiang X	2015-08-13	Rheumatology (Oxford)	An Immunochip-based interaction study of contrasting interaction effects with smoking in ACPA-positive versus ACPA-negative rheumatoid arthritis.	ACPA-positive rheumatoid arthritis (smoking interaction)	340 European ancestry never-smoker cases, 493 European ancestry ever-smoker cases, 746 European ancestry never-smoker controls, 994 European ancestry ever-smoker controls	187 European ancestry never-smoker cases, 421 European ancestry ever-smoker cases, 461 European ancestry never-smoker controls, 447 European ancestry ever-smoker controls	6p21.32	NR	rs9275495-?	NR	2E-6	(adjusted for HLA shared epitope)	1.724138	[1.22-2.94]	Illumina [133648] (imputed)	N
616	chr6_mann_hap4	4131376	4131377	rs9275497	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6p21.32	MTCO3P1	rs9275497-G	0.239038	1E-18		0.025688766	[0.02-0.031] unit increase	Affymetrix [93095623] (imputed)	N
616	chr6_mann_hap4	4131875	4131876	rs35332745	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs35332745-C	0.2	2E-8		4.11	[3.16-5.35]	Illumina [NR] (imputed)	N
616	chr6_mann_hap4	4131978	4131979	rs9275511	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Adult onset asthma or type 2 diabetes	33,418 European ancestry asthma cases, 393,186 European ancestry asthma controls, 159,208 European ancestry diabetes cases and controls	NA	6p21.32	NR	rs9275511-?	NR	4E-18				Affymetrix [up to 8270000] (imputed)	N
616	chr6_mann_hap4	4132292	4132293	rs9275516	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs9275516-A	0.48	1E-8		0.18	[0.13-0.25]	Illumina [NR] (imputed)	N
616	chr6_mann_hap4	4132374	4132375	rs17206287	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs17206287-A	0.858	2E-12		1.2	[1.15-1.25]	Illumina [11270530] (imputed)	N
616	chr6_mann_hap4	4132386	4132387	rs1794265	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	NR	rs1794265-C	0.945894807901907	8E-6	(IGP1)	0.3014	[0.17-0.43] unit decrease	Illumina [~ 2500000] (imputed)	N
616	chr6_mann_hap4	4132386	4132387	rs1794265	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	NR	rs1794265-C	0.945736455079007	1E-6	(IGP19)	0.3272	[0.2-0.46] unit decrease	Illumina [~ 2500000] (imputed)	N
616	chr6_mann_hap4	4132386	4132387	rs1794265	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	NR	rs1794265-C	0.945425811930783	3E-7	(IGP41)	0.3448	[0.21-0.48] unit decrease	Illumina [~ 2500000] (imputed)	N
616	chr6_mann_hap4	4132715	4132716	rs17206350	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	MTCO3P1	rs17206350-C	NR	9E-9		0.0179759	[0.012-0.024] unit increase	Affymetrix [323858] (imputed)	N
616	chr6_mann_hap4	4132715	4132716	rs17206350	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	MTCO3P1	rs17206350-C	NR	4E-8		0.0171917	[0.011-0.023] unit increase	Affymetrix [127266] (imputed)	N
616	chr6_mann_hap4	4132715	4132716	rs17206350	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	MTCO3P1	rs17206350-C	NR	2E-8		0.0159877	[0.01-0.022] unit increase	Affymetrix [321114] (imputed)	N
616	chr6_mann_hap4	4132757	4132758	rs9275524	25608926	Betz RC	2015-01-22	Nat Commun	Genome-wide meta-analysis in alopecia areata resolves HLA associations and reveals two new susceptibility loci.	Alopecia areata	2,332 European ancestry cases and 5,233 European ancestry controls	764 European ancestry cases and 2,256 European ancestry controls	6p21.32	HLA-DQB1	rs9275524-C	NR	2E-60		1.92		Illumina [1233578] (imputed)	N
616	chr6_mann_hap4	4132757	4132758	rs9275524	23453885	Smoller JW	2013-02-27	Lancet	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NA	6p21.32	intergenic	rs9275524-T		2E-7	(Modelling analysis)	1.07	[1.04-1.09]	NR [1252901] (imputed)	N
616	chr6_mann_hap4	4133118	4133119	rs12525220	24782177	Jiang L	2014-05-01	Arthritis Rheumatol	Novel risk loci for rheumatoid arthritis in Han Chinese and congruence with risk variants in Europeans.	Rheumatoid arthritis	433 Han Chinese ancestry ACPA positive cases, 519 Han Chinese ancestry ACPA negative cases, 943 Han Chinese ancestry controls	1,032 Han Chinese ancestry ACPA positive cases, 1,100 Han Chinese ancestry ACPA negative cases, 2,553 Han Chinese ancestry controls	6p21.32	HLA-DQA2, MHC, HLA-DQB1	rs12525220-A	0.057	7E-14	(ACPA+ cases vs. all controls)	3.015	[NR]	Affymetrix [3441843] (imputed)	N
616	chr6_mann_hap4	4133118	4133119	rs12525220	24782177	Jiang L	2014-05-01	Arthritis Rheumatol	Novel risk loci for rheumatoid arthritis in Han Chinese and congruence with risk variants in Europeans.	Rheumatoid arthritis	433 Han Chinese ancestry ACPA positive cases, 519 Han Chinese ancestry ACPA negative cases, 943 Han Chinese ancestry controls	1,032 Han Chinese ancestry ACPA positive cases, 1,100 Han Chinese ancestry ACPA negative cases, 2,553 Han Chinese ancestry controls	6p21.32	HLA-DQA2, MHC, HLA-DQB1	rs12525220-A	0.057	3E-12	(all cases vs. all controls)	2.608	[NR]	Affymetrix [3441843] (imputed)	N
616	chr6_mann_hap4	4133118	4133119	rs12525220	24782177	Jiang L	2014-05-01	Arthritis Rheumatol	Novel risk loci for rheumatoid arthritis in Han Chinese and congruence with risk variants in Europeans.	Rheumatoid arthritis	433 Han Chinese ancestry ACPA positive cases, 519 Han Chinese ancestry ACPA negative cases, 943 Han Chinese ancestry controls	1,032 Han Chinese ancestry ACPA positive cases, 1,100 Han Chinese ancestry ACPA negative cases, 2,553 Han Chinese ancestry controls	6p21.32	HLA-DQA2, MHC, HLA-DQB1	rs12525220-A	0.057	2E-13	(ACPA- cases vs. all controls)	2.869	[NR]	Affymetrix [3441843] (imputed)	N
616	chr6_mann_hap4	4133171	4133172	rs9275530	26272072	Jiang X	2015-08-13	Rheumatology (Oxford)	An Immunochip-based interaction study of contrasting interaction effects with smoking in ACPA-positive versus ACPA-negative rheumatoid arthritis.	ACPA-positive rheumatoid arthritis (smoking interaction)	340 European ancestry never-smoker cases, 493 European ancestry ever-smoker cases, 746 European ancestry never-smoker controls, 994 European ancestry ever-smoker controls	187 European ancestry never-smoker cases, 421 European ancestry ever-smoker cases, 461 European ancestry never-smoker controls, 447 European ancestry ever-smoker controls	6p21.32	NR	rs9275530-?	NR	2E-6	(adjusted for HLA shared epitope)	1.724138	[1.23-2.94]	Illumina [133648] (imputed)	N
616	chr6_mann_hap4	4133282	4133283	rs9275532	26272072	Jiang X	2015-08-13	Rheumatology (Oxford)	An Immunochip-based interaction study of contrasting interaction effects with smoking in ACPA-positive versus ACPA-negative rheumatoid arthritis.	ACPA-positive rheumatoid arthritis (smoking interaction)	340 European ancestry never-smoker cases, 493 European ancestry ever-smoker cases, 746 European ancestry never-smoker controls, 994 European ancestry ever-smoker controls	187 European ancestry never-smoker cases, 421 European ancestry ever-smoker cases, 461 European ancestry never-smoker controls, 447 European ancestry ever-smoker controls	6p21.32	NR	rs9275532-?	NR	5E-6	(adjusted for HLA shared epitope)	1.754386	[1.23-3.12]	Illumina [133648] (imputed)	N
616	chr6_mann_hap4	4133899	4133900	rs3129721	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	IgA nephropathy	1,180 East Asian ancestry cases, 899 East Asian ancestry controls	NA			rs3129721-A	NR	6E-10		0.530478	[0.36-0.7] unit increase	Illumina [NR] (imputed)	N
616	chr6_mann_hap4	4133899	4133900	rs3129721	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA		NR	rs3129721-?	NR	7E-7		0.0367	[0.022-0.051] unit decrease	Illumina [at least 560000] (imputed)	N
616	chr6_mann_hap4	4134609	4134610	rs17615220	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	6p21.32	MTCO3P1	rs17615220-G	0.055013	3E-10		0.035653602	[0.025-0.047] unit decrease	Affymetrix [93095623] (imputed)	N
616	chr6_mann_hap4	4134975	4134976	rs4947344	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	MTCO3P1	rs4947344-T	NR	6E-9		0.0183059	[0.012-0.024] unit decrease	Affymetrix [319769] (imputed)	N
616	chr6_mann_hap4	4134975	4134976	rs4947344	31375628	Tengvall K	2019-08-02	Proc Natl Acad Sci U S A	Molecular mimicry between Anoctamin 2 and Epstein-Barr virus nuclear antigen 1 associates with multiple sclerosis risk.	Anti-anoctamin 2 antibody levels	11,936 European ancestry individuals	NA	6p21.32	NR	rs4947344-A	NR	1E-9		0.056	[0.032-0.080] unit increase	Illumina [615763]	N
616	chr6_mann_hap4	4134975	4134976	rs4947344	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p21.32	NR	rs4947344-?	NR	1E-24		0.2606	[0.21-0.31] unit decrease	Illumina [at least 560000] (imputed)	N
616	chr6_mann_hap4	4135037	4135038	rs9275563	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	MTCO3P1	rs9275563-T	NR	4E-11		0.0202974	[0.014-0.026] unit decrease	Affymetrix [323123] (imputed)	N
616	chr6_mann_hap4	4135037	4135038	rs9275563	23472185	Mero IL	2013-03-05	PLoS One	Oligoclonal band status in Scandinavian multiple sclerosis patients is associated with specific genetic risk alleles.	Multiple sclerosis (OCB status)	1,367 European ancestry OCB positive cases, 161 European ancestry OCB negative cases, 428 European ancestry controls	NA	6p21.32	HLA-DQA2	rs9275563-?	NR	6E-11	(OCB positive vs. controls)	1.75	[1.47-2.04]	Illumina [495970]	N
616	chr6_mann_hap4	4135315	4135316	rs6932517	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs6932517-C	0.48	2E-8		0.19	[0.14-0.27]	Illumina [NR] (imputed)	N
616	chr6_mann_hap4	4135332	4135333	rs9275570	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma and/or BMI	28,862 European ancestry cases, 422,048 European ancestry controls, 6,912 European ancestry individuals	NA	6p21.32	NR	rs9275570-G	NR	2E-19				Affymetrix [~ 8270000] (imputed)	N
616	chr6_mann_hap4	4135332	4135333	rs9275570	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	6p21.32	NR	rs9275570-?	NR	3E-18				Affymetrix [~ 8270000] (imputed)	N
616	chr6_mann_hap4	4135729	4135730	rs4273729	23420232	Duggal P	2013-02-19	Ann Intern Med	Genome-wide association study of spontaneous resolution of hepatitis C virus infection: data from multiple cohorts.	Chronic hepatitis C infection	1,482 chronic HCV cases, 919 spontaneously cleared HCV cases	461 chronic HCV cases, 284 spontaneously cleared HCV cases	6p21.32	HLA	rs4273729-?	NR	5E-17		1.59		Illumina [792721] (imputed)	N
616	chr6_mann_hap4	4136139	4136140	rs9275572	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs9275572-A	0.48	8E-9		0.17	[0.12-0.24]	Illumina [NR] (imputed)	N
616	chr6_mann_hap4	4136139	4136140	rs9275572	24871463	Armstrong DL	2014-05-29	Genes Immun	GWAS identifies novel SLE susceptibility genes and explains the association of the HLA region.	Systemic lupus erythematosus	725 European ancestry cases, 2,438 European ancestry controls	NA	6p21.32	HLA-DQA2	rs9275572-A	0.4	5E-16		1.74	[1.64-1.85]	Illumina [NR]	N
616	chr6_mann_hap4	4136139	4136140	rs9275572	24376798	Miki D	2013-12-20	PLoS One	HLA-DQB1*03 confers susceptibility to chronic hepatitis C in Japanese: a genome-wide association study.	Chronic hepatitis C infection	481 Japanese ancestry cases, 2,963 Japanese ancestry controls	5,737 Japanese ancestry cases, 26,931 Japanese ancestry controls	6p21.32	HLA-DQB1, HLA-DQA1	rs9275572-T	0.359	4E-16		1.27	[1.19-1.33]	Illumina [458207]	N
616	chr6_mann_hap4	4136139	4136140	rs9275572	21499248	Kumar V	2011-04-17	Nat Genet	Genome-wide association study identifies a susceptibility locus for HCV-induced hepatocellular carcinoma.	Hepatocellular carcinoma	721 Japanese ancestry cases, 2,890 Japanese ancestry controls	673 Japanese ancestry cases, 2,596 Japanese ancestry controls	6p21.32	HLA-DQ, HLA-DR	rs9275572-A	0.36	6E-9		1.3	[1.19-1.42]	Illumina [432703]	N
616	chr6_mann_hap4	4136139	4136140	rs9275572	20596022	Petukhova L	2010-07-01	Nature	Genome-wide association study in alopecia areata implicates both innate and adaptive immunity.	Alopecia areata	Up to 1,054 European ancestry cases, 3,278 European ancestry controls	NA	6p21.32	HLA-DQA2	rs9275572-G	0.59	1E-35		2.21	[1.98-2.47]	Illumina [463301]	N
616	chr6_mann_hap4	4136465	4136466	rs9275576	31837886	Kennedy OJ	2019-12-02	Am J Kidney Dis	Coffee Consumption and Kidney Function: A Mendelian Randomization Study.	Coffee consumption (cups per day)	227,666 British ancestry individuals	NA	6p21.32	HLA-DQA2	rs9275576-T	0.146	6E-9		0.048	NR cups per day increase	NR [NR]	N
616	chr6_mann_hap4	4136523	4136524	rs9275578	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs9275578-T	0.31	1E-9		4.62	[3.51-6.10]	Illumina [NR] (imputed)	N
616	chr6_mann_hap4	4136598	4136599	rs9275579	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	MTCO3P1	rs9275579-A	NR	2E-11		0.0245816	[0.017-0.032] unit decrease	Affymetrix [323123] (imputed)	N
616	chr6_mann_hap4	4136601	4136602	rs9275580	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs9275580-G	0.33	3E-8		3.96	[3.03-5.19]	Illumina [NR] (imputed)	N
616	chr6_mann_hap4	4137209	4137210	rs9275582	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs9275582-T	0.31	1E-9		4.54	[3.45-5.98]	Illumina [NR] (imputed)	N
616	chr6_mann_hap4	4137209	4137210	rs9275582	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (non-Lofgren's syndrome without extrapulmonary manifestations)	451 Swedish ancestry cases, 2,086 Swedish ancestry controls	NA	6p21.32	HLA-DQB1, HLA-DQA2, HLA-DQA1	rs9275582-G	0.83	2E-11		1.8705574	[1.57-2.24]	Illumina [118177]	N
616	chr6_mann_hap4	4137261	4137262	rs3135461	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs3135461-A	0.841	2E-39		0.726	[0.68-0.77]	Illumina [11270530] (imputed)	N
616	chr6_mann_hap4	4137261	4137262	rs3135461	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.32		rs3135461-A	0.773542	8E-36		1.0648913	[1.05-1.08]	Affymetrix, Illumina [9851866] (imputed)	N
616	chr6_mann_hap4	4137522	4137523	rs9275587	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	XXbac-BPG254F23.7	rs9275587-C	NR	5E-9		0.0184889	[0.012-0.025] unit increase	Affymetrix [323858] (imputed)	N
616	chr6_mann_hap4	4137522	4137523	rs9275587	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	XXbac-BPG254F23.7	rs9275587-C	NR	2E-8		0.0178049	[0.012-0.024] unit increase	Affymetrix [127266] (imputed)	N
616	chr6_mann_hap4	4137719	4137720	rs7764819	23284291	Hancock DB	2012-12-20	PLoS Genet	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (smoking interaction)	50,047 European ancestry individuals	NA	6p21.32	HLA-DQA2, HLA-DQB1	rs7764819-T	0.89	4E-9	(FEV1/FVC, Pack-years)	1.0E-4	[-0.00014-0.00025] unit decrease	NR [~ 2500000] (imputed)	N
616	chr6_mann_hap4	4137719	4137720	rs7764819	23284291	Hancock DB	2012-12-20	PLoS Genet	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (smoking interaction)	50,047 European ancestry individuals	NA	6p21.32	HLA-DQA2, HLA-DQB1	rs7764819-T	0.89	4E-9	(FEV1/FVC, Ever-smoking)	0.001	[-0.04016-0.04216] unit decrease	NR [~ 2500000] (imputed)	N
616	chr6_mann_hap4	4137763	4137764	rs9275592	28041642	Carmona FD	2016-12-29	Am J Hum Genet	A Genome-wide Association Study Identifies Risk Alleles in Plasminogen and P4HA2 Associated with Giant Cell Arteritis.	Giant cell arteritis	2,134 European ancestry cases, 9,125 European ancestry controls	NA	6p21.32	HLA-DQA1, HLA-DQA2	rs9275592-?	0.11	1E-40		2.08	[1.87-2.32]	Illumina [1844133] (imputed)	N
616	chr6_mann_hap4	4138073	4138074	rs7765379	25383971	Dunstan SJ	2014-11-10	Nat Genet	Variation at HLA-DRB1 is associated with resistance to enteric fever.	Enteric fever	432 Vietnamese ancestry cases, 2,011 Vietnamese ancestry controls	151 Vietnamese ancestry cases,  668 Vietnamese ancestry controls, 595 Nepalese ancestry cases, 386 Nepalese ancestry controls	6p21.32	HLA-DRB1, HLA-DQB1	rs7765379-A	0.945	2E-13		4.55	[2.94-6.67]	Illumina [709725]	N
616	chr6_mann_hap4	4138073	4138074	rs7765379	23266558	Yamazaki K	2012-12-21	Gastroenterology	A genome-wide association study identifies 2 susceptibility Loci for Crohn's disease in a Japanese population.	Crohn's disease	372 Japanese ancestry cases,3,389 Japanese ancestry controls	Up to 1,151 Japanese ancestry cases, up to 15,800 Japanese ancestry controls	6p21.32	HLA-DQA2, HLA-DOB, HLA-DQB1, PSMB9, HLA-DRB1, HLA-DQA1	rs7765379-G	NR	9E-59		1.93	[1.78-2.09]	Illumina [4929034] (imputed)	N
616	chr6_mann_hap4	4138073	4138074	rs7765379	21452313	Freudenberg J	2011-04-01	Arthritis Rheum	Genome-wide association study of rheumatoid arthritis in Koreans: population-specific loci as well as overlap with European susceptibility loci.	Rheumatoid arthritis	801 Korean ancestry cases, 757 Korean ancestry controls	718 Korean ancestry cases, 719 Korean ancestry controls	6p21.32	HLA-DRB1	rs7765379-?		5E-23		2.51	[NR]	Illumina [441398]	N
616	chr6_mann_hap4	4138306	4138307	rs2858332	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	XXbac-BPG254F23.7	rs2858332-T	NR	7E-18		0.0263625	[0.02-0.032] unit decrease	Affymetrix [323123] (imputed)	N
616	chr6_mann_hap4	4138306	4138307	rs2858332	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	6p21.32	HLA-DQA2	rs2858332-T	0.50665382076412	7E-7	(G_Clostridium_sensu_stricto_RNT)	0.129415	[0.078-0.181] unit decrease	Illumina [7711310] (imputed)	N
616	chr6_mann_hap4	4138422	4138423	rs2858331	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs2858331-G	0.33	4E-8		3.82	[2.93-4.97]	Illumina [NR] (imputed)	N
616	chr6_mann_hap4	4138422	4138423	rs2858331	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Non-Hodgkin's lymphoma	2,400 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs2858331-G	NR	3E-7		1.1625204	NR	Affymetrix [7846216] (imputed)	N
616	chr6_mann_hap4	4138422	4138423	rs2858331	23146381	Levin AM	2012-11-10	J Allergy Clin Immunol	A meta-analysis of genome-wide association studies for serum total IgE in diverse study populations.	IgE levels	2,469 African American individuals, 259 Latino individuals, 1,564 European ancestry individuals	2,961 African American individuals, 1,477 Latino individuals, 649 European ancestry individuals, 680 Hutterite individuals	6p21.32	HLA-DQA2	rs2858331-G	NR	6E-6				Affymetrix, Illumina [NR] (imputed)	N
616	chr6_mann_hap4	4138422	4138423	rs2858331	22075330	Granada M	2011-11-08	J Allergy Clin Immunol	A genome-wide association study of plasma total IgE concentrations in the Framingham Heart Study.	IgE levels	6,819 European ancestry individuals	7,809 European ancestry indivduals	6p21.32	HLA-DQA2	rs2858331-G	NR	1E-8		0.04	[NR] unit decrease	Affymetrix [2540223] (imputed)	N
616	chr6_mann_hap4	4138500	4138501	rs9275595	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	6p21.32	HLA-DQA2	rs9275595-T	0.763	6E-6		0.016	[0.0089-0.0227] kg/m2 increase	Affymetrix, Illumina [2550021]	N
616	chr6_mann_hap4	4138500	4138501	rs9275595	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	6p21.32	HLA-DQA2	rs9275595-T	0.76	9E-6	(EA)	0.016	[0.009-0.0232] kg/m2 increase	Affymetrix, Illumina [2550021]	N
616	chr6_mann_hap4	4138628	4138629	rs7454108	29857070	Gao J	2018-05-29	J Invest Dermatol	Association study and fine-mapping major histocompatibility complex analysis of pemphigus vulgaris in a Han Chinese population.	Pemphigus vulgaris	240 Han Chinese ancestry cases, 1,031 Han Chinese ancestry controls	252 Han Chinese ancestry cases, 1,852 Han Chinese ancestry controls	6p21.32	NR	rs7454108-?	NR	3E-12	(conditioned on HLA-DRB1*14:04)	3.25	[NR]	Illumina [802980]	N
616	chr6_mann_hap4	4138628	4138629	rs7454108	28029757	Merkel PA	2016-12-28	Arthritis Rheumatol	Identification of Functional and Expression Polymorphisms Associated With Risk for Antineutrophil Cytoplasmic Autoantibody-Associated Vasculitis.	Vasculitis associated with antineutrophil cytoplasmic antibody reactive to myeloperoxidase	324 European ancestry cases and 3258 European ancestry controls.	54 European ancestry cases and 1465 European ancestry controls.	6p21.32	HLA-DQA2	rs7454108-C	0.10	5E-25		2.73	2.25-3.24	Affymetrix [at least 333035] (imputed)	N
616	chr6_mann_hap4	4138628	4138629	rs7454108	26272072	Jiang X	2015-08-13	Rheumatology (Oxford)	An Immunochip-based interaction study of contrasting interaction effects with smoking in ACPA-positive versus ACPA-negative rheumatoid arthritis.	ACPA-positive rheumatoid arthritis (smoking interaction)	340 European ancestry never-smoker cases, 493 European ancestry ever-smoker cases, 746 European ancestry never-smoker controls, 994 European ancestry ever-smoker controls	187 European ancestry never-smoker cases, 421 European ancestry ever-smoker cases, 461 European ancestry never-smoker controls, 447 European ancestry ever-smoker controls	6p21.32	NR	rs7454108-?	NR	2E-6	(adjusted for HLA shared epitope)	1.724138	[1.22-2.94]	Illumina [133648] (imputed)	N
616	chr6_mann_hap4	4138675	4138676	rs3957146	26272072	Jiang X	2015-08-13	Rheumatology (Oxford)	An Immunochip-based interaction study of contrasting interaction effects with smoking in ACPA-positive versus ACPA-negative rheumatoid arthritis.	ACPA-positive rheumatoid arthritis (smoking interaction)	340 European ancestry never-smoker cases, 493 European ancestry ever-smoker cases, 746 European ancestry never-smoker controls, 994 European ancestry ever-smoker controls	187 European ancestry never-smoker cases, 421 European ancestry ever-smoker cases, 461 European ancestry never-smoker controls, 447 European ancestry ever-smoker controls	6p21.32	NR	rs3957146-?	NR	1E-6	(adjusted for HLA shared epitope)	1.724138	[1.22-2.86]	Illumina [133648] (imputed)	N
616	chr6_mann_hap4	4138776	4138777	rs9275596	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	IgA nephropathy	1,180 East Asian ancestry cases, 899 East Asian ancestry controls	NA	6p21.32	NR	rs9275596-T	NR	6E-10				Illumina [NR] (imputed)	N
616	chr6_mann_hap4	4138776	4138777	rs9275596	32912934	Li M	2020-09-10	J Am Soc Nephrol	Genome-Wide Meta-Analysis Identifies Three Novel Susceptibility Loci and Reveals Ethnic Heterogeneity of Genetic Susceptibility for IgA Nephropathy.	IgA nephropathy	2,628 Chinese ancestry cases, 11,563 Chinese ancestry controls	6,879 Han Chinese ancestry cases, 9,019 Han Chinese ancestry controls, 1,039 Italian ancestry cases, 1,289 Italian ancestry controls	6p21.32	DQB1.DRB1	rs9275596-T	0.8466025166479287	2E-13	(East Asian)	1.4409347	[1.3070519220741-1.58853123859263]	NR [3611808] (imputed)	N
616	chr6_mann_hap4	4138776	4138777	rs9275596	25710614	Hong X	2015-02-24	Nat Commun	Genome-wide association study identifies peanut allergy-specific loci and evidence of epigenetic mediation in US children.	Peanut allergy	316 European ancestry child cases, 144 European ancestry non-allergic non-sensitized normal child controls, 589 European ancestry uncertain phenotype child controls, 1,148 European ancestry uncertain phenotype adult controls	62 European ancestry child cases, 69 European ancestry child controls, 24 child cases, 58 child controls	6p21.32	HLA-DRB1, HLA-DQA1, HLA-DQB1, HLA-DQA2	rs9275596-C	0.35	6E-11	(EA)	1.7	[1.40-2.10]	Illumina [6459842] (imputed)	N
616	chr6_mann_hap4	4138776	4138777	rs9275596	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	6p21.32	HLA-DQB1, HLA-DQA1, HLA-DRB1	rs9275596-T	0.8	1E-19	(East Asian)	1.69	[NR]	Illumina [> 1000000] (imputed)	N
616	chr6_mann_hap4	4138776	4138777	rs9275596	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	6p21.32	HLA-DQB1, HLA-DQA1, HLA-DRB1	rs9275596-T	0.65	3E-31		1.44	[NR]	Illumina [> 1000000] (imputed)	N
616	chr6_mann_hap4	4138776	4138777	rs9275596	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	6p21.32	HLA-DQB1, HLA-DQA1, HLA-DRB1	rs9275596-T	0.65	2E-15	(EA)	1.35		Illumina [> 1000000] (imputed)	N
616	chr6_mann_hap4	4138776	4138777	rs9275596	21399633	Gharavi AG	2011-03-13	Nat Genet	Genome-wide association study identifies susceptibility loci for IgA nephropathy.	Nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls	712 Han Chinese ancestry cases, 748 Han Chinese ancestry controls, 1,238 European ancestry cases, 1,172 European ancestry controls	6p21.32	HLA-DQB1, HLA-DRB1, HLA-DQA1	rs9275596-?	0.73 (EA)	2E-26		1.59	[NR]	Illumina [498322]	N
616	chr6_mann_hap4	4138814	4138815	rs6935723	25217962	Heap GA	2014-09-14	Nat Genet	HLA-DQA1-HLA-DRB1 variants confer susceptibility to pancreatitis induced by thiopurine immunosuppressants.	Response to thiopurine immunosuppressants in inflammatory bowel disease (pancreatitis) (azathioprine and mercaptopurine)	172 European ancestry cases, 2,035 European ancestry controls	78 European ancestry cases, 472 controls	6p21.32	HLA region	rs6935723-C	0.27	1E-21		2.46	[2.04-2.98]	Affymetrix, Illumina [2819700] (imputed)	N
616	chr6_mann_hap4	4138821	4138822	rs3104402	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	XXbac-BPG254F23.7	rs3104402-T	NR	3E-10		0.035252	[0.024-0.046] unit increase	Affymetrix [323123] (imputed)	N
616	chr6_mann_hap4	4138821	4138822	rs3104402	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	6p21.32	NR	rs3104402-?	NR	1E-8		0.1164	[0.076-0.157] unit decrease	Illumina [at least 560000] (imputed)	N
616	chr6_mann_hap4	4138821	4138822	rs3104402	22658931	Pajewski NM	2012-05-30	Vaccine	A genome-wide association study of host genetic determinants of the antibody response to Anthrax Vaccine Adsorbed.	Immune response to anthrax vaccine	726 European ancestry individuals	NA	6p21.32	HLA-DRB1, HLA-DQA1	rs3104402-A	NR	6E-6		0.165	[0.094-0.236] unit decrease	Affymetrix [736996]	N
616	chr6_mann_hap4	4139138	4139139	rs3998158	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs3998158-C	0.3	4E-9		4.39	[3.33-5.79]	Illumina [NR] (imputed)	N
616	chr6_mann_hap4	4139165	4139166	rs3998159	26272072	Jiang X	2015-08-13	Rheumatology (Oxford)	An Immunochip-based interaction study of contrasting interaction effects with smoking in ACPA-positive versus ACPA-negative rheumatoid arthritis.	ACPA-positive rheumatoid arthritis (smoking interaction)	340 European ancestry never-smoker cases, 493 European ancestry ever-smoker cases, 746 European ancestry never-smoker controls, 994 European ancestry ever-smoker controls	187 European ancestry never-smoker cases, 421 European ancestry ever-smoker cases, 461 European ancestry never-smoker controls, 447 European ancestry ever-smoker controls	6p21.32	NR	rs3998159-?	NR	2E-6	(adjusted for HLA shared epitope)	1.724138	[1.22-2.94]	Illumina [133648] (imputed)	N
616	chr6_mann_hap4	4139281	4139282	rs3957147	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	XXbac-BPG254F23.7	rs3957147-T	NR	5E-9		0.0232882	[0.015-0.031] unit increase	Affymetrix [323123] (imputed)	N
616	chr6_mann_hap4	4139281	4139282	rs3957147	32534018	Liu X	2020-06-10	Brain Behav Immun	Genetic factors underlying the bidirectional relationship between autoimmune and mental disorders - findings from a Danish population-based study.	Autoimmune traits	1,383 Danish ancestry cases, 62,656 Danish ancestry controls	NA	6p21.32	NR	rs3957147-T	0.21	9E-9		1.34	[1.21-1.48]	NR [7721839] (imputed)	N
616	chr6_mann_hap4	4139320	4139321	rs3104404	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	150,545 East Asian ancestry individuals	NA	6p21.32		rs3104404-A	0.356773	3E-10		0.0227	[0.016-0.03] unit decrease	Illumina [13478866] (imputed)	N
616	chr6_mann_hap4	4139345	4139346	rs35122968	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p21.32	HLA-DQA2	rs35122968-C	0.043	4E-11		0.2	[0.14-0.26] unit increase	Affymetrix, Illumina [7374092] (imputed)	N
616	chr6_mann_hap4	4139353	4139354	rs3129731	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	6p21.32		rs3129731-G	0.795841844	3E-12		0.07240271	[0.052-0.093] unit decrease	Illumina [13134967] (imputed)	N
616	chr6_mann_hap4	4139374	4139375	rs2894381	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	6p21.32		rs2894381-A	0.422035	4E-8		0.0201838	[0.013-0.027] unit increase	Illumina [13476266] (imputed)	N
616	chr6_mann_hap4	4139374	4139375	rs2894381	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	121,047 East Asian ancestry individuals	NA	6p21.32	NR	rs2894381-G	0.566792	3E-10		0.026702	[0.018-0.035] SD units decrease	Affymetrix, Illumina [16286195] (imputed)	N
616	chr6_mann_hap4	4139374	4139375	rs2894381	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p21.32		rs2894381-?	NR	6E-9		0.0142926	[0.0092-0.0194] unit decrease	Affymetrix [20259828] (imputed)	N
616	chr6_mann_hap4	4139540	4139541	rs3997848	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.32		rs3997848-T	0.676	4E-17				Affymetrix [10369434] (imputed)	N
616	chr6_mann_hap4	4139540	4139541	rs3997848	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	XXbac-BPG254F23.7	rs3997848-G	NR	2E-8		0.0168279	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
616	chr6_mann_hap4	4139540	4139541	rs3997848	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	XXbac-BPG254F23.7	rs3997848-G	NR	1E-8		0.0171568	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
616	chr6_mann_hap4	4139540	4139541	rs3997848	33545615	Hsu LA	2021-01-19	Atherosclerosis	Circulating chemerin levels are determined through circulating platelet counts in nondiabetic Taiwanese people: A bidirectional Mendelian randomization study.	Chemerin levels	3,887 Han Chinese ancestry individuals	NA	6p21.32	HLA	rs3997848-?	NR	5E-8		0.017	[0.012-0.022] unit increase (adjusted)	Affymetrix [610203]	N
616	chr6_mann_hap4	4139540	4139541	rs3997848	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p21.32	HLA-DQA2	rs3997848-G	0.117	2E-14		0.135	[0.1-0.17] unit increase	Affymetrix, Illumina [7374092] (imputed)	N
616	chr6_mann_hap4	4139548	4139549	rs3997849	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p21.32	NR	rs3997849-T	0.262	3E-6	(IFNAR2_of_CD8p_T)			Illumina [5084123] (imputed)	N
616	chr6_mann_hap4	4139575	4139576	rs9275599	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs9275599-T	0.032	2E-16	(conditional)	1.585	[1.48-1.69]	Illumina [11270530] (imputed)	N
616	chr6_mann_hap4	4139733	4139734	rs113721192	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.32	Intergenic	rs113721192-?		1E-6		1.06	[1.03-1.08]	Illumina [7645193] (imputed)	N
616	chr6_mann_hap4	4139733	4139734	rs113721192	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.32	Intergenic	rs113721192-?		3E-7		1.76	[1.42-2.18]	Illumina [7645193] (imputed)	N
616	chr6_mann_hap4	4139807	4139808	rs9275601	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.32		rs9275601-C	0.559	2E-19				Affymetrix [10369434] (imputed)	N
616	chr6_mann_hap4	4139807	4139808	rs9275601	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.32		rs9275601-C	0.559	1E-20				Affymetrix [10369434] (imputed)	N
616	chr6_mann_hap4	4139955	4139956	rs9275602	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	XXbac-BPG254F23.7	rs9275602-A	NR	1E-8		0.0219542	[0.014-0.029] unit increase	Affymetrix [323123] (imputed)	N
616	chr6_mann_hap4	4139955	4139956	rs9275602	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs9275602-?	NR	8E-10				Affymetrix [~ 8270000] (imputed)	N
616	chr6_mann_hap4	4139955	4139956	rs9275602	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	6p21.32	NR	rs9275602-?	NR	5E-29	(conditional)			Affymetrix [15688218] (imputed)	N
616	chr6_mann_hap4	4140707	4140708	rs200025476	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.32	NR	rs200025476-T	0.011	3E-9		0.507765	[0.34-0.67] unit increase	Affymetrix [up to 8900000] (imputed)	N
616	chr6_mann_hap4	4140707	4140708	rs200025476	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.32	NR	rs200025476-T	0.011	2E-6	(women)	0.688868	[0.41-0.97] unit increase	Affymetrix [up to 8900000] (imputed)	N
616	chr6_mann_hap4	4140823	4140824	rs9391746	33961016	Moksnes MR	2021-05-07	Hum Mol Genet	Genome-wide association study of cardiac troponin I in the general population.	High-sensitivity cardiac troponin I concentration	48,115 European ancestry individuals	NA	6p21.32		rs9391746-T	0.0718	1E-8		0.08	[0.06-0.1] unit increase	Illumina [26711992] (imputed)	N
616	chr6_mann_hap4	4141487	4141488	rs5024431	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6p21.32		rs5024431-?	NR	6E-17		0.897905	[0.87-0.92]	NR [685523]	N
616	chr6_mann_hap4	4142080	4142081	rs9275642	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Skin cancer	25,928 European ancestry cases, 466,275 European ancestry controls, 154 East Asian ancestry cases, 178,572 East Asian ancestry controls	NA	6p21.32		rs9275642-T	NR	4E-21		0.1097	[0.087-0.132] unit decrease	Affymetrix, Illumina [25845421] (imputed)	N
616	chr6_mann_hap4	4142080	4142081	rs9275642	27539887	Chahal HS	2016-08-19	Nat Commun	Genome-wide association study identifies 14 novel risk alleles associated with basal cell carcinoma.	Basal cell carcinoma	12.945 European ancestry cases, 274,252 European ancestry controls	4,242 European ancestry cases, 12,802 European ancestry controls	6p21.32	HLA-DQA2	rs9275642-C	0.79	2E-12		1.1235955	[NR]	Illumina [at least 560000] (imputed)	N
616	chr6_mann_hap4	4142343	4142344	rs41288885	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.32	XXbac-BPG254F23.7	rs41288885-G	0.058676	5E-9		0.028841805	[0.019-0.039] unit increase	Affymetrix [93095623] (imputed)	N
616	chr6_mann_hap4	4142343	4142344	rs41288885	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.32	NR	rs41288885-?	NR	9E-10				Affymetrix [~ 8270000] (imputed)	N
616	chr6_mann_hap4	4142525	4142526	rs3998154	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.32		rs3998154-G	0.585	9E-27				Affymetrix [10369434] (imputed)	N
616	chr6_mann_hap4	4142525	4142526	rs3998154	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p21.32		rs3998154-G	0.585	1E-22				Affymetrix [10369434] (imputed)	N
616	chr6_mann_hap4	4142695	4142696	rs3916765	34716350	Lin WY	2021-10-29	Nat Commun	Genome-wide association study identifies susceptibility loci for acute myeloid leukemia.	Acute myeloid leukemia (normal cytogenetics)	3,041 European ancestry cases, 6,760 European ancestry controls	977 European ancestry cases, 3,728 European ancestry controls	6p21.32		rs3916765-G	NR	2E-10		1.72	[1.46-2.03]	Affymetrix, Illumina [6496414] (imputed)	N
616	chr6_mann_hap4	4142695	4142696	rs3916765	22693455	Perry JR	2012-05-31	PLoS Genet	Stratifying type 2 diabetes cases by BMI identifies genetic risk variants in LAMA1 and enrichment for risk variants in lean compared to obese cases.	Type 2 diabetes	2,112 lean type 2 diabetes cases, 4,123 obese type 2 diabetes cases, 54,412 controls	2,881 lean type 2 diabetes cases, 8,702 obese type 2 diabetes cases, 18,957 controls	6p21.32	HLA-DQA2	rs3916765-A	0.12	1E-6	(Lean)	1.21	[1.12-1.31]	NR [NR]	N
616	chr6_mann_hap4	4143774	4143775	rs9275667	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	XXbac-BPG254F23.7	rs9275667-T	NR	1E-15		0.0312755	[0.024-0.039] unit decrease	Affymetrix [323858] (imputed)	N
616	chr6_mann_hap4	4143774	4143775	rs9275667	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	XXbac-BPG254F23.7	rs9275667-T	NR	6E-15		0.0304364	[0.023-0.038] unit decrease	Affymetrix [127266] (imputed)	N
616	chr6_mann_hap4	4145100	4145101	rs9275698	21804548	Hirota T	2011-07-31	Nat Genet	Genome-wide association study identifies three new susceptibility loci for adult asthma in the Japanese population.	Asthma	1,532 Japanese ancestry cases, 3,304 Japanese ancestry controls	5,639 Japanese ancestry cases, 24,608 Japanese ancestry controls	6p21.32	HLA-DQA2	rs9275698-T	0.79	5E-12		1.18	[1.12-1.24]	Illumina [458847]	N
616	chr6_mann_hap4	4145347	4145348	rs9275710	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	XXbac-BPG254F23.7	rs9275710-T	NR	1E-9		0.0190333	[0.013-0.025] unit decrease	Affymetrix [323858] (imputed)	N
616	chr6_mann_hap4	4145347	4145348	rs9275710	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	XXbac-BPG254F23.7	rs9275710-T	NR	9E-9		0.018054	[0.012-0.024] unit decrease	Affymetrix [127266] (imputed)	N
616	chr6_mann_hap4	4147024	4147025	rs117522574	32771030	Tangtanatakul P	2020-08-08	Arthritis Res Ther	Meta-analysis of genome-wide association study identifies FBN2 as a novel locus associated with systemic lupus erythematosus in Thai population.	Systemic lupus erythematosus	487 Thai cases, 1,606 Thai controls	405 Thai cases, 1,590 Thai controls	6p21.32	XXbac-BPG254F23.7, HLA-DQB3	rs117522574-G	0.19	3E-8		1.5082	[NR]	Illumina [421909] (imputed)	N
616	chr6_mann_hap4	4148169	4148170	rs9275844	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	XXbac-BPG254F23.7	rs9275844-T	NR	2E-8		0.0217782	[0.014-0.029] unit increase	Affymetrix [323123] (imputed)	N
616	chr6_mann_hap4	4150393	4150394	rs2858892	30657218	Park SY	2019-01-18	Clin Exp Allergy	Longitudinal analysis to better characterize Asthma-COPD Overlap Syndrome (ACOS): Findings from an adult asthma cohort in Korea (COREA).	Adult asthma	731 Korean ancestry cases, 5,915 Korean ancestry controls	NA	6p21.32	NR	rs2858892-?	NR	4E-7		1.34		NR [267429]	N
616	chr6_mann_hap4	4151154	4151155	rs114803904	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs114803904-C	0.474	1E-24	(cAMP-specific 3',5'-cyclic phosphodiesterase 4D, PDE4D.5255.22.3)	0.29	[0.23-0.35] unit increase	Affymetrix [10572788] (imputed)	N
616	chr6_mann_hap4	4152226	4152227	rs73732611	33558538	Gebresilase T	2021-02-08	Sci Rep	Replication of HLA class II locus association with susceptibility to podoconiosis in three Ethiopian ethnic groups.	Podoconiosis	1,137 Ethiopian ancestry cases, 1,152 Ethiopian ancestry controls	NA	6p21.32	HLA-DQB3	rs73732611-C	0.07	5E-9				Illumina [2201695]	N
616	chr6_mann_hap4	4154935	4154936	rs2859113	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	NR	rs2859113-C	0.378328302013423	6E-8	(IGP59)	0.1817	[0.12-0.25] unit decrease	Illumina [~ 2500000] (imputed)	N
616	chr6_mann_hap4	4157230	4157231	rs2858884	20711174	Hor H	2010-08-15	Nat Genet	Genome-wide association study identifies new HLA class II haplotypes strongly protective against narcolepsy.	Narcolepsy	562 European ancestry cases, 702 European ancestry controls	370 cases, 495 controls	6p21.32	HLA-DQA2	rs2858884-A	0.81	3E-8		1.79	[1.45-2.17]	Affymetrix [392949]	N
616	chr6_mann_hap4	4158363	4158364	rs9276244	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	IgA levels	16,883 Icelandic ancestry individuals	2,151 Swedish ancestry individuals	6p21.32	HLA-DQA2	rs9276244-G	0.328	3E-14		0.09	NR SD units increase	Illumina [21568490] (imputed)	N
616	chr6_mann_hap4	4159117	4159118	rs9276263	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p21.32	NR	rs9276263-?	NR	7E-16		0.1146	[0.087-0.142] unit increase	Illumina [at least 560000] (imputed)	N
616	chr6_mann_hap4	4164450	4164451	rs9276370	32004448	Savage SA	2020-01-30	Am J Hum Genet	Genome-wide Association Study Identifies HLA-DPB1 as a Significant Risk Factor for Severe Aplastic Anemia.	Severe aplastic anemia	359 European ancestry cases, 1,396 European ancestry controls	175 European ancestry cases, 1,059 European ancestry controls	6p21.32	HLA-DQA2, HLA-DQB2	rs9276370-?	NR	5E-7		1.41	[1.23-1.62]	Illumina [688067]	N
616	chr6_mann_hap4	4164450	4164451	rs9276370	24940741	Chang SW	2014-06-18	PLoS One	A genome-wide association study on chronic HBV infection and its clinical progression in male Han-Taiwanese.	Chronic hepatitis B infection	321 Chinese ancestry cases, 304 Chinese ancestry controls	1,302 Chinese ancestry cases, 761 Chinese ancestry controls	6p21.32	HLA-DQA2	rs9276370-T	0.076	2E-12		1.95	[1.62-2.34]	Illumina [456262]	N
616	chr6_mann_hap4	4165522	4165522	rs11426605	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs11426605-T	0.966	3E-15	(conditional)	0.648	[0.54-0.76]	Illumina [11270530] (imputed)	N
616	chr6_mann_hap4	4167379	4167380	rs9461806	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.32		rs9461806-C	0.595	2E-17				Affymetrix [10369434] (imputed)	N
616	chr6_mann_hap4	4167379	4167380	rs9461806	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.32		rs9461806-C	0.595	1E-25				Affymetrix [10369434] (imputed)	N
616	chr6_mann_hap4	4167565	4167566	rs115018313	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	6p21.32		rs115018313-C	NR	7E-33		0.284	[0.24-0.33] unit increase	Affymetrix, Illumina [25845091] (imputed)	N
616	chr6_mann_hap4	4168012	4168013	rs9276423	26379185	Garcia-Etxebarria K	2015-09-17	PLoS One	No Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity.	Mild influenza (H1N1) infection	107 European ancestry mild cases, 549 European ancestry population controls	NA	6p21.32	HLA-DQA2	rs9276423-?	0.0	3E-8				Affymetrix [547296]	N
616	chr6_mann_hap4	4169017	4169018	rs9276427	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first birth	542,901 European ancestry individuals	NA	6p21.32	HLA-DQA2	rs9276427-T	0.5217	3E-8		0.0532	[0.034-0.072] unit increase	NR [9744772] (imputed)	N
616	chr6_mann_hap4	4169017	4169018	rs9276427	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQA2	rs9276427-C	NR	6E-9		0.0164173	[0.011-0.022] unit increase	Affymetrix [319769] (imputed)	N
616	chr6_mann_hap4	4169017	4169018	rs9276427	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DQA2	rs9276427-C	NR	1E-8		0.0160937	[0.011-0.022] unit increase	Affymetrix [319769] (imputed)	N
616	chr6_mann_hap4	4169017	4169018	rs9276427	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DQA2	rs9276427-C	NR	3E-8		0.0158296	[0.01-0.021] unit increase	Affymetrix [321169] (imputed)	N
616	chr6_mann_hap4	4169017	4169018	rs9276427	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.32		rs9276427-C	0.49390500000000004	2E-10		1.0275491	[1.02-1.03]	Affymetrix, Illumina [9851866] (imputed)	N
616	chr6_mann_hap4	4169169	4169170	rs41288889	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs41288889-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
616	chr6_mann_hap4	4169834	4169835	rs9276434	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	6p21.32	HLA-DQA2	rs9276434-T	NR	4E-17		0.0479129	[0.037-0.059] unit decrease	Illumina [13520550] (imputed)	N
616	chr6_mann_hap4	4171035	4171036	rs9276435	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cervical cancer	6,563 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs9276435-C	NR	2E-10		1.1631	NR	Affymetrix [7846216] (imputed)	N
616	chr6_mann_hap4	4178611	4178612	rs2077046	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQB2	rs2077046-C	NR	2E-8		0.0159433	[0.01-0.021] unit increase	Affymetrix [319769] (imputed)	N
616	chr6_mann_hap4	4182389	4182390	rs2301271	21408207	Chung SA	2011-03-03	PLoS Genet	Differential genetic associations for systemic lupus erythematosus based on anti-dsDNA autoantibody production.	Systemic lupus erythematosus	811 anti-dsDNA positive European ancestry cases, 906 anti-dsDNA negative European ancestry cases, 4,813 European ancestry controls	NA	6p21.32	HLA-DQA2	rs2301271-T	0.40	2E-12	(anti-dsDNA -)	1.47	[1.32-1.63]	Illumina [421318] (imputed)	N
616	chr6_mann_hap4	4183472	4183473	rs9276578	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p21.32	HLA-DQB2	rs9276578-G	NR	2E-9		0.0231702	[0.016-0.031] unit decrease	Affymetrix [323858] (imputed)	N
616	chr6_mann_hap4	4184001	4184002	rs1049110	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	HLA-DQA2, HLA-DQB2	rs1049110-C	0.346381764494382	2E-8	(IGP42)	0.1909	[0.12-0.26] unit increase	Illumina [~ 2500000] (imputed)	N
616	chr6_mann_hap4	4184001	4184002	rs1049110	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	HLA-DQA2, HLA-DQB2	rs1049110-C	0.34601888034188	4E-8	(IGP2)	0.1853	[0.12-0.25] unit increase	Illumina [~ 2500000] (imputed)	N
616	chr6_mann_hap4	4184407	4184408	rs9276580	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.32		rs9276580-T	0.46	8E-18				Affymetrix [10369434] (imputed)	N
616	chr6_mann_hap4	4184523	4184524	rs7753017	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs7753017-A	0.237	5E-43		0.745	[0.7-0.79]	Illumina [11270530] (imputed)	N
616	chr6_mann_hap4	4185840	4185841	rs2395258	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	6p21.32	HLA-DQB2	rs2395258-T	NR	6E-9		0.0205128	[0.014-0.027] unit increase	Illumina [13519193] (imputed)	N
616	chr6_mann_hap4	4186256	4186257	rs2006163	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.32		rs2006163-A	0.462	4E-35				Affymetrix [10369434] (imputed)	N
616	chr6_mann_hap4	4186931	4186932	rs2008560	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQB2	rs2008560-G	NR	3E-12		0.0196979	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
616	chr6_mann_hap4	4186931	4186932	rs2008560	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DQB2	rs2008560-G	NR	2E-11		0.0189439	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
616	chr6_mann_hap4	4186931	4186932	rs2008560	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DQB2	rs2008560-G	NR	1E-10		0.0183237	[0.013-0.024] unit increase	Affymetrix [321169] (imputed)	N
616	chr6_mann_hap4	4186931	4186932	rs2008560	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling worry	372,869 European ancestry individuals	NA	6p21.32	C4B	rs2008560-C	0.496591	3E-8		5.56	unit decrease	NR [10847151] (imputed)	N
616	chr6_mann_hap4	4187209	4187210	rs7453920	27244555	Li Y	2016-05-31	Nat Commun	Genome-wide association study identifies 8p21.3 associated with persistent hepatitis B virus infection among Chinese.	Persistent hepatitis B virus infection	1,251 Chinese ancestry persistently infected cases, 1,057 Chinese ancestry spontaneously recovered controls	3,905 Chinese ancestry persistently infected cases, 3,356 Chinese ancestry spontaneously recovered controls	6p21.32	HLA-DQB2	rs7453920-A		6E-6		2.0	[1.47-2.78]	Affymetrix, Illumina [up to 4494311] (imputed)	N
616	chr6_mann_hap4	4187209	4187210	rs7453920	25802187	Jiang DK	2015-04-28	Hepatology	Genetic variants in five novel loci including CFB and CD40 predispose to chronic hepatitis B.	Chronic hepatitis B infection	2,514 Chinese ancestry cases, 1,130 Chinese ancestry controls	6,600 Chinese ancestry cases, 8,127 Chinese ancestry controls	6p21.32	HLA-DQB2	rs7453920-A	0.88	1E-60		2.0	[1.82-2.17]	Illumina [3680900] (imputed)	N
616	chr6_mann_hap4	4187209	4187210	rs7453920	24940741	Chang SW	2014-06-18	PLoS One	A genome-wide association study on chronic HBV infection and its clinical progression in male Han-Taiwanese.	Chronic hepatitis B infection	321 Chinese ancestry cases, 304 Chinese ancestry controls	1,302 Chinese ancestry cases, 761 Chinese ancestry controls	6p21.32	HLA-DQB2	rs7453920-G	0.051	7E-15		2.31	[1.87-2.85]	Illumina [456262]	N
616	chr6_mann_hap4	4187209	4187210	rs7453920	24162738	Hu Z	2013-10-27	Nat Genet	New loci associated with chronic hepatitis B virus infection in Han Chinese.	Hepatitis B	951 Han Chinese ancestry HBV carrier cases, 937 Han Chinese ancestry HBV cleared controls	4,230 Chinese ancestry HBV carrier cases, 3,051 Chinese ancestry HBV cleared controls, 2,622 Chinese ancestry controls	6p21.32	HLA-DQB2	rs7453920-G	0.87	5E-37		1.8868	[1.69-2.08]	Illumina [490610]	N
616	chr6_mann_hap4	4187209	4187210	rs7453920	23760081	Kim YJ	2013-06-10	Hum Mol Genet	A genome-wide association study identified new variants associated with the risk of chronic hepatitis B.	Chronic hepatitis B infection	400 Korean ancestry cases, 1,000 Korean ancestry controls	971 Korean ancestry cases, 1,938 Korean ancestry controls	6p21.32	HLA-DQ	rs7453920-?	NR	7E-26		2.0	[1.72-2.27]	Illumina [719265]	N
616	chr6_mann_hap4	4187209	4187210	rs7453920	23349640	Vijai J	2013-01-17	PLoS Genet	Susceptibility loci associated with specific and shared subtypes of lymphoid malignancies.	Lymphoma	275 Follicular non-Hodgkin's Lymphoma cases, 269 diffuse large B-cell non-Hodgkin's Lymphoma cases, 198 other non-Hodgkin's Lymphoma cases, 202 Hodgkin's Lymphoma cases, 4,044 controls	202 European ancestry Follicular non-Hodgkin's Lymphoma cases, 367 European ancestry diffuse large B-cell non-Hodgkin's Lymphoma cases, 577 European ancestry other non-Hodgkin's Lymphoma cases, 99 European ancestry Hodgkin's Lymphoma cases, 2,596 European ancestry controls	6p21.32	HLA-DQB2	rs7453920-?	NR	5E-6	(LYM)	1.19	[1.11-1.3]	Affymetrix [530583]	N
616	chr6_mann_hap4	4187209	4187210	rs7453920	21750111	Mbarek H	2011-07-12	Hum Mol Genet	A genome-wide association study of chronic hepatitis B identified novel risk locus in a Japanese population.	Hepatitis B	458 Japanese ancestry cases, 2,056 Japanese ancestry controls	2,209 Japanese ancestry cases, 4,440 Japanese ancestry controls	6p21.32	HAL-DQB2	rs7453920-G	0.83	6E-28		1.81	[1.62-2.01]	Illumina [423627]	N
616	chr6_mann_hap4	4187283	4187284	rs2051549	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DQB2	rs2051549-G	NR	4E-9		0.0181006	[0.012-0.024] unit increase	Affymetrix [323123] (imputed)	N
616	chr6_mann_hap4	4187283	4187284	rs2051549	23053960	Lee YH	2012-10-07	Mol Biol Rep	Genome-wide pathway analysis of genome-wide association studies on systemic lupus erythematosus and rheumatoid arthritis.	Systemic lupus erythematosus	1,527 European ancestry cases, 3,421 European ancestry controls,	NA	6p21.32	HLA-DQA2	rs2051549-?	NR	3E-22				Illumina [737984]	N
616	chr6_mann_hap4	4188137	4188138	rs2071550	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	6p21.32	SLC44A4, EHMT2, HLA-DQB2, STK19, CYP21A2, TNXB	rs2071550-?	NR	7E-6				Affymetrix, Illumina [18800000] (imputed)	N
616	chr6_mann_hap4	4188137	4188138	rs2071550	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	6p21.32	SLC44A4, EHMT2, HLA-DQB2, STK19, CYP21A2, TNXB	rs2071550-?	NR	1E-9	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
616	chr6_mann_hap4	4188137	4188138	rs2071550	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	6p21.32	SLC44A4, EHMT2, HLA-DQB2, STK19, CYP21A2, TNXB	rs2071550-?	NR	5E-8	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
616	chr6_mann_hap4	4190825	4190826	rs33998906	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQB2	rs33998906-T	NR	5E-8		0.0304833	[0.02-0.041] unit increase	Affymetrix [319769] (imputed)	N
616	chr6_mann_hap4	4190825	4190826	rs33998906	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DQB2	rs33998906-T	NR	2E-8		0.0314602	[0.021-0.042] unit increase	Affymetrix [319769] (imputed)	N
616	chr6_mann_hap4	4191501	4191502	rs9276601	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQB2	rs9276601-G	NR	4E-8		0.0202269	[0.013-0.027] unit decrease	Affymetrix [319769] (imputed)	N
616	chr6_mann_hap4	4193197	4193198	rs9296042	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Scarlet fever	6,812 European ancestry cases, 113,837 European ancestry controls	NA	6p21.32	NR	rs9296042-?	NR	3E-6		0.0873	[0.051-0.124] unit decrease	Illumina [at least 560000] (imputed)	N
616	chr6_mann_hap4	4193887	4193888	rs9276606	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DQB2	rs9276606-T	NR	1E-9		0.021091	[0.014-0.028] unit decrease	Affymetrix [323858] (imputed)	N
616	chr6_mann_hap4	4193887	4193888	rs9276606	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	HLA-DQB2	rs9276606-T	NR	2E-9		0.0208414	[0.014-0.028] unit decrease	Affymetrix [127266] (imputed)	N
616	chr6_mann_hap4	4193887	4193888	rs9276606	23028341	Yang X	2012-09-13	PLoS Genet	Genome-wide association study for serum complement C3 and C4 levels in healthy Chinese subjects.	Complement C3 and C4 levels	1,999 Han Chinese ancestry male individuals	1,496 Han Chinese ancestry male individuals	6p21.32	HLA-DQB	rs9276606-T	0.15	3E-22	(Serum level of C4)	0.09	[0.070-0.110] g/L decrease	Illumina [1940245] (imputed)	N
617	chr6_mann_hap4	4197599	4197600	rs2857212	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.32		rs2857212-A	0.635	2E-33				Affymetrix [10369434] (imputed)	N
617	chr6_mann_hap4	4197599	4197600	rs2857212	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.32		rs2857212-A	0.635	2E-31				Affymetrix [10369434] (imputed)	N
617	chr6_mann_hap4	4197599	4197600	rs2857212	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.32		rs2857212-A	0.635	2E-57				Affymetrix [10369434] (imputed)	N
617	chr6_mann_hap4	4198194	4198195	rs2621419	33235445	Lee YJ	2020-11-17	Int J Chron Obstruct Pulmon Dis	A Genome-Wide Association Study in Early COPD: Identification of One Major Susceptibility Loci.	Early chronic obstructive pulmonary disease in never smokers	38 Korean ancestry cases, 1,778 Korean ancestry controls	NA	6p21.32	HLA-DQB2	rs2621419-?	NR	9E-6		0.68	NR	Affymetrix [345072]	N
617	chr6_mann_hap4	4199056	4199057	rs2621416	23349640	Vijai J	2013-01-17	PLoS Genet	Susceptibility loci associated with specific and shared subtypes of lymphoid malignancies.	Lymphoma	275 Follicular non-Hodgkin's Lymphoma cases, 269 diffuse large B-cell non-Hodgkin's Lymphoma cases, 198 other non-Hodgkin's Lymphoma cases, 202 Hodgkin's Lymphoma cases, 4,044 controls	202 European ancestry Follicular non-Hodgkin's Lymphoma cases, 367 European ancestry diffuse large B-cell non-Hodgkin's Lymphoma cases, 577 European ancestry other non-Hodgkin's Lymphoma cases, 99 European ancestry Hodgkin's Lymphoma cases, 2,596 European ancestry controls	6p21.32	HLA-DQB2, TAP2	rs2621416-G	NR	2E-9	(FL)	1.57	[NR]	Affymetrix [530583]	N
617	chr6_mann_hap4	4199283	4199284	rs9276610	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DQB2	rs9276610-A	NR	1E-9		0.0272626	[0.018-0.036] unit increase	Affymetrix [323123] (imputed)	N
617	chr6_mann_hap4	4200015	4200016	rs12663317	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	6p21.32	NR	rs12663317-?	NR	6E-12				Affymetrix [~ 8270000] (imputed)	N
617	chr6_mann_hap4	4201535	4201536	rs2857204	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	6p21.32	intergenic	rs2857204-T	0.327	9E-19		0.03378215	[0.026-0.041] unit decrease	Affymetrix [~ 2500000] (imputed)	N
617	chr6_mann_hap4	4201628	4201629	rs28724893	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQB2	rs28724893-T	NR	2E-8		0.0157586	[0.01-0.021] unit decrease	Affymetrix [319769] (imputed)	N
617	chr6_mann_hap4	4201628	4201629	rs28724893	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DQB2	rs28724893-T	NR	4E-11		0.0202278	[0.014-0.026] unit increase	Affymetrix [323123] (imputed)	N
617	chr6_mann_hap4	4202022	4202023	rs9276643	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6p21.32	NR	rs9276643-C	0.6647	8E-12		1.0858942	[1.06-1.11]	Affymetrix [15688218] (imputed)	N
617	chr6_mann_hap4	4202022	4202023	rs9276643	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	6p21.32	NR	rs9276643-?	NR	7E-105	(conditional)			Affymetrix [15688218] (imputed)	N
617	chr6_mann_hap4	4202715	4202716	rs12661352	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs12661352-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
617	chr6_mann_hap4	4203517	4203518	rs9501203	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.32		rs9501203-T	0.677	8E-12				Affymetrix [10369434] (imputed)	N
617	chr6_mann_hap4	4206141	4206142	rs28986343	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous malignant melanoma	36,760 European ancestry cases, 375,188 European ancestry controls	NA	6p21.32	HLA-DQB2	rs28986343-C	0.952	2E-8		1.1531	NR	Affymetrix, Illumina [NR] (imputed)	N
617	chr6_mann_hap4	4206677	4206678	rs574879686	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs574879686-A	0.018	1E-6		0.701	[0.56-0.84]	Illumina [11270530] (imputed)	N
617	chr6_mann_hap4	4208604	4208605	rs7749543	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6p21.32	NR	rs7749543-G	0.6269	8E-10		1.0775862	[1.05-1.1]	Affymetrix [15688218] (imputed)	N
617	chr6_mann_hap4	4208604	4208605	rs7749543	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	6p21.32	NR	rs7749543-?	NR	8E-115	(conditional)			Affymetrix [15688218] (imputed)	N
617	chr6_mann_hap4	4208604	4208605	rs7749543	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p21.32	NR	rs7749543-?	NR	3E-6		0.0596	[0.035-0.085] unit increase	Illumina [at least 560000] (imputed)	N
617	chr6_mann_hap4	4215582	4215583	rs7758736	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DOB	rs7758736-A	NR	1E-9		0.02222	[0.015-0.029] unit decrease	Affymetrix [321169] (imputed)	N
617	chr6_mann_hap4	4218698	4218699	rs4318925	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DOB	rs4318925-T	NR	3E-9		0.0220014	[0.015-0.029] unit decrease	Affymetrix [321169] (imputed)	N
617	chr6_mann_hap4	4220706	4220707	rs2857151	22446962	Onouchi Y	2012-03-25	Nat Genet	A genome-wide association study identifies three new risk loci for Kawasaki disease.	Kawasaki disease	428 Japanese ancestry cases, 3,379 Japanese ancestry controls	754 Japanese ancestry cases, 947 Japanese ancestry controls	6p21.32	HLA-DOB, HLA-DQB2	rs2857151-G	0.76	5E-11		1.47	[1.23-1.77]	Illumina [463793]	N
617	chr6_mann_hap4	4221727	4221728	rs62398467	34011352	Schwarm C	2021-05-19	Orphanet J Rare Dis	Identification of two novel bullous pemphigoid- associated alleles, HLA-DQA1*05:05 and -DRB1*07:01, in Germans.	Bullous pemphigoid	438 German cases, 417 German controls	NA	6p21.32	HLA-DQB2, HLA-DOB	rs62398467-?	NR	7E-6		0.520158	[0.29-0.75] unit increase	Affymetrix [up to 386296] (imputed)	N
617	chr6_mann_hap4	4222777	4222778	rs9276731	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DOB	rs9276731-T	NR	1E-15		0.0382096	[0.029-0.048] unit decrease	Affymetrix [323858] (imputed)	N
617	chr6_mann_hap4	4222777	4222778	rs9276731	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	HLA-DOB	rs9276731-T	NR	3E-14		0.0364203	[0.027-0.046] unit decrease	Affymetrix [127266] (imputed)	N
617	chr6_mann_hap4	4222777	4222778	rs9276731	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p21.32	HLA-DOB	rs9276731-T	NR	1E-8		0.0269325	[0.018-0.036] unit decrease	Affymetrix [323858] (imputed)	N
617	chr6_mann_hap4	4226584	4226585	rs2621363	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6p21.32	NR	rs2621363-T	0.7091	8E-13		1.0481081	[1.04-1.06]	Affymetrix [15688218] (imputed)	N
617	chr6_mann_hap4	4226584	4226585	rs2621363	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	6p21.32	NR	rs2621363-?	NR	7E-31	(conditional)			Affymetrix [15688218] (imputed)	N
617	chr6_mann_hap4	4227674	4227675	rs151165576	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Treatment or medication use - insulin product (UKB data field 20003_1140883066)	4,469 European ancestry cases, 451,807 European ancestry controls	NA	6p21.32		rs151165576-A	0.003916	2E-15		1.58	[1.19-1.97] unit increase	NR [11842647] (imputed)	N
617	chr6_mann_hap4	4228536	4228537	rs2621355	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.32	Intergenic	rs2621355-G	NR	5E-8		0.0202164	[0.013-0.028] unit increase	Illumina [13520550] (imputed)	N
617	chr6_mann_hap4	4230051	4230052	rs9276757	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.32		rs9276757-A	0.772	8E-30				Affymetrix [10369434] (imputed)	N
617	chr6_mann_hap4	4234116	4234117	rs1054684	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DOB	rs1054684-C	NR	2E-10		0.0303692	[0.021-0.04] unit increase	Affymetrix [323123] (imputed)	N
617	chr6_mann_hap4	4234116	4234117	rs1054684	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.32	TAP2, HLA-DOB	rs1054684-C	0.115598	1E-11		0.03328803	[0.024-0.043] unit increase	Affymetrix [93095623] (imputed)	N
617	chr6_mann_hap4	4234116	4234117	rs1054684	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	6p21.32	NR	rs1054684-C	0.114999	1E-8		0.0591419	[0.038-0.08] unit increase	Affymetrix [17914406] (imputed)	N
617	chr6_mann_hap4	4235111	4235114	rs144227975	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs144227975-CTTT	0.665	4E-15	(conditional)	0.864	[0.83-0.9]	Illumina [11270530] (imputed)	N
617	chr6_mann_hap4	4235617	4235618	rs9276796	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6p21.32	NR	rs9276796-G	0.3953	1E-20		1.058	[1.046-1.07]	Affymetrix [15688218] (imputed)	N
617	chr6_mann_hap4	4235851	4235852	rs1812006	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.32	Intergenic	rs1812006-G	NR	1E-7	(women)	0.0361932	[0.023-0.05] unit decrease	Illumina [13520550] (imputed)	N
617	chr6_mann_hap4	4245907	4245908	rs2621322	30552173	Aterido A	2018-12-14	Ann Rheum Dis	Genetic variation at the glycosaminoglycan metabolism pathway contributes to the risk of psoriatic arthritis but not psoriasis.	Psoriatic arthritis	744 Spanish ancestry cases, 1,454 Spanish ancestry controls	1,430 cases, 1,417 controls	6p21.32	NR	rs2621322-?	NR	2E-8		5.6	[NR] z-score decrease	Illumina [1387382] (imputed)	N
617	chr6_mann_hap4	4246595	4246596	rs151027268	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.32	NR	rs151027268-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
617	chr6_mann_hap4	4250717	4250718	rs13501	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	TAP2	rs13501-A	NR	3E-9		0.0199818	[0.013-0.027] unit decrease	Affymetrix [323123] (imputed)	N
617	chr6_mann_hap4	4252226	4252227	rs10484565	26272072	Jiang X	2015-08-13	Rheumatology (Oxford)	An Immunochip-based interaction study of contrasting interaction effects with smoking in ACPA-positive versus ACPA-negative rheumatoid arthritis.	ACPA-positive rheumatoid arthritis (smoking interaction)	340 European ancestry never-smoker cases, 493 European ancestry ever-smoker cases, 746 European ancestry never-smoker controls, 994 European ancestry ever-smoker controls	187 European ancestry never-smoker cases, 421 European ancestry ever-smoker cases, 461 European ancestry never-smoker controls, 447 European ancestry ever-smoker controls	6p21.32	NR	rs10484565-?	NR	7E-10	(adjusted for HLA shared epitope)	1.4285715	[1.09-2.13]	Illumina [133648] (imputed)	N
617	chr6_mann_hap4	4253420	4253421	rs241453	32492067	Ruffieux H	2020-06-03	PLoS Comput Biol	A fully joint Bayesian quantitative trait locus mapping of human protein abundance in plasma.	Protein quantitative trait loci	376 European ancestry individuals	400 European ancestry individuals	6p21.32	NR	rs241453-?	NR	2E-6	(C4a)			Illumina [~ 4000000] (imputed)	N
617	chr6_mann_hap4	4254309	4254310	rs241443	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	6p21.32	TAP2	rs241443-G	0.294917	2E-19		0.022992264	[0.018-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
617	chr6_mann_hap4	4254967	4254968	rs2228391	26151496	Chen PL	2015-07-07	Nat Commun	Genetic determinants of antithyroid drug-induced agranulocytosis by human leukocyte antigen genotyping and genome-wide association study.	Thionamide-induced agranulocytosis in Graves' disease	21 East Asian ancestry cases with agranulocytosis, 662 East Asian ancestry cases without agranulocytosis	21 East Asian ancestry cases with agranulocytosis, 546 East Asian ancestry cases without agranulocytosis	6p21.32	HLA	rs2228391-C	0.108	4E-7	(trend)	3.32	[2.02-5.46] (allelic)	Affymetrix [522980]	N
617	chr6_mann_hap4	4255070	4255071	rs241436	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6p21.32		rs241436-?	NR	7E-9		1.06498	[1.04-1.09]	NR [685523]	N
617	chr6_mann_hap4	4255070	4255071	rs241436	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in lean individuals	up to 5,529 European ancestry male individuals, up to 9,753 European ancestry female individuals	NA	6p21.32	TAP2	rs241436-G	0.49	8E-6	(men)	0.089	[0.05-0.128] kg/m2 increase	Affymetrix, Illumina [at least 188473] (imputed)	N
617	chr6_mann_hap4	4257039	4257040	rs60045856	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	6p21.32	NR	rs60045856-G	0.11004825178496	5E-12		0.0101193655	[0.0072-0.013] unit decrease	NR [NR]	N
617	chr6_mann_hap4	4257039	4257040	rs60045856	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p21.32	NR	rs60045856-?	NR	3E-8		0.0829	[0.054-0.112] unit increase	Illumina [at least 560000] (imputed)	N
617	chr6_mann_hap4	4259656	4259657	rs62397688	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	IgA nephropathy	1,180 East Asian ancestry cases, 899 East Asian ancestry controls	NA			rs62397688-A	NR	4E-6		0.58857	[0.34-0.84] unit decrease	Illumina [NR] (imputed)	N
617	chr6_mann_hap4	4260001	4260002	rs4148872	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Diastolic blood pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	6p21.32	HLA	rs4148872-T	0.148057452	2E-7		0.2012	[0.13-0.28] unit increase	Affymetrix [~ 9800000] (imputed)	N
617	chr6_mann_hap4	4260602	4260603	rs28724898	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p21.32	NR	rs28724898-?	NR	4E-13		0.1556	[0.11-0.2] unit decrease	Illumina [at least 560000] (imputed)	N
617	chr6_mann_hap4	4261034	4261035	rs241429	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	TAP2	rs241429-A	NR	3E-8		0.0169285	[0.011-0.023] unit increase	Affymetrix [323123] (imputed)	N
617	chr6_mann_hap4	4261264	4261265	rs241428	23028341	Yang X	2012-09-13	PLoS Genet	Genome-wide association study for serum complement C3 and C4 levels in healthy Chinese subjects.	Complement C3 and C4 levels	1,999 Han Chinese ancestry male individuals	1,496 Han Chinese ancestry male individuals	6p21.32	HLA-DQB	rs241428-G	0.08	9E-83	(Serum level of C4)	0.23	[0.21-0.25] g/L increase	Illumina [1940245] (imputed)	N
617	chr6_mann_hap4	4261413	4261414	rs3819715	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (mother's age at death or mother's attained age)	up to 699,000 individuals	NA	6p21.32	NR	rs3819715-C		7E-6				Illumina [458525]	N
617	chr6_mann_hap4	4261493	4261494	rs3819717	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (non-Lofgren's syndrome without extrapulmonary manifestations)	451 Swedish ancestry cases, 2,086 Swedish ancestry controls	NA	6p21.32	TAP2, PSMB9, HLA-DMB, HLA-DPB1	rs3819717-G	0.515	2E-6		1.434	[1.249-1.648]	Illumina [118177]	N
617	chr6_mann_hap4	4261608	4261609	rs241427	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p21.32	TAP2	rs241427-G	0.797	4E-6		0.062	[0.035-0.089] unit decrease	Affymetrix, Illumina [7374092] (imputed)	N
617	chr6_mann_hap4	4261764	4261765	rs3819720	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.32	NR	rs3819720-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
617	chr6_mann_hap4	4261764	4261765	rs3819720	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs3819720-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
617	chr6_mann_hap4	4261764	4261765	rs3819720	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p21.32	NR	rs3819720-?	NR	1E-12		0.1645	[0.12-0.21] unit decrease	Illumina [at least 560000] (imputed)	N
617	chr6_mann_hap4	4262073	4262074	rs1871665	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.32		rs1871665-T	0.55322	1E-12		1.0307605	[1.02-1.04]	Affymetrix, Illumina [9851866] (imputed)	N
617	chr6_mann_hap4	4262243	4262244	rs2239701	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	Composite immunoglobulin trait (IgA/IgG)	14,183 Icelandic ancestry individuals	2,146 Swedish ancestry individuals	6p21.32	TAP2	rs2239701-C	0.368	3E-10		0.08	NR SD units decrease	Illumina [21568490] (imputed)	N
617	chr6_mann_hap4	4262501	4262502	rs2071466	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.32		rs2071466-C	0.704	1E-10				Affymetrix [10369434] (imputed)	N
617	chr6_mann_hap4	4262501	4262502	rs2071466	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p21.32	TAP2	rs2071466-T		1E-24		0.024	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
617	chr6_mann_hap4	4263587	4263588	rs4148870	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p21.32	TAP2	rs4148870-C	0.402	2E-6		0.053	[0.031-0.075] unit increase	Affymetrix, Illumina [7374092] (imputed)	N
617	chr6_mann_hap4	4263749	4263750	rs74365910	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Ulcerative colitis (PheCode 555.2)	2,569 European ancestry cases, 453,779 European ancestry controls	NA	6p21.32		rs74365910-A	0.009189	9E-10		0.97	[0.66-1.28] unit increase	NR [11842647] (imputed)	N
617	chr6_mann_hap4	4263749	4263750	rs74365910	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Treatment or medication use - levothyroxine sodium (UKB data field 20003_1141191044)	18,688 European ancestry cases, 437,588 European ancestry controls	NA	6p21.32		rs74365910-A	0.009068	2E-15		0.46	[0.35-0.57] unit increase	NR [11842647] (imputed)	N
617	chr6_mann_hap4	4264685	4264686	rs114595701	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	6p21.32	NR	rs114595701-T	0.0925422107617213	2E-9		0.012502657	[0.0084-0.0166] unit decrease	NR [NR]	N
617	chr6_mann_hap4	4264685	4264686	rs114595701	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	6p21.32	NR	rs114595701-T	0.0925422107617213	6E-9		0.013367118	[0.0089-0.0179] unit decrease	NR [NR]	N
617	chr6_mann_hap4	4264685	4264686	rs114595701	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	6p21.32	NR	rs114595701-T	0.0925422107617213	2E-9		0.010604257	[0.0071-0.0141] unit decrease	NR [NR]	N
617	chr6_mann_hap4	4265494	4265495	rs45506201	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	6p21.32	NR	rs45506201-A	0.0926176111889165	4E-9		0.015973978	[0.011-0.021] unit decrease	NR [NR]	N
617	chr6_mann_hap4	4267043	4267044	rs9357155	21399633	Gharavi AG	2011-03-13	Nat Genet	Genome-wide association study identifies susceptibility loci for IgA nephropathy.	Nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls	712 Han Chinese ancestry cases, 748 Han Chinese ancestry controls, 1,238 European ancestry cases, 1,172 European ancestry controls	6p21.32	TAP2, TAP1, PSMB8, PSMB9	rs9357155-?	0.87 (EA)	2E-12		1.41	[NR]	Illumina [498322]	N
617	chr6_mann_hap4	4268824	4268825	rs2071543	32912934	Li M	2020-09-10	J Am Soc Nephrol	Genome-Wide Meta-Analysis Identifies Three Novel Susceptibility Loci and Reveals Ethnic Heterogeneity of Genetic Susceptibility for IgA Nephropathy.	IgA nephropathy	2,628 Chinese ancestry cases, 11,563 Chinese ancestry controls	6,879 Han Chinese ancestry cases, 9,019 Han Chinese ancestry controls, 1,039 Italian ancestry cases, 1,289 Italian ancestry controls	6p21.32	PSMB8	rs2071543-G	0.8187836227622588	1E-6	(East Asian)	1.2505606	[1.14305470436016-1.36817776509077]	NR [3611808] (imputed)	N
617	chr6_mann_hap4	4268824	4268825	rs2071543	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	6p21.32	PSMB9, TAP1, TAP2, PSMB8	rs2071543-G	0.80	2E-9	(East Asian)	1.41	[NR]	Illumina [> 1000000] (imputed)	N
617	chr6_mann_hap4	4269723	4269724	rs2071463	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	6p21.32		rs2071463-?	NR	5E-8				Affymetrix [NR] (imputed)	N
617	chr6_mann_hap4	4275225	4275226	rs113206908	32771030	Tangtanatakul P	2020-08-08	Arthritis Res Ther	Meta-analysis of genome-wide association study identifies FBN2 as a novel locus associated with systemic lupus erythematosus in Thai population.	Systemic lupus erythematosus	487 Thai cases, 1,606 Thai controls	405 Thai cases, 1,590 Thai controls	6p21.32	PSMB9	rs113206908-G	0.21	4E-7		1.4327	[NR]	Illumina [421909] (imputed)	N
617	chr6_mann_hap4	4275873	4275874	rs2071538	32534018	Liu X	2020-06-10	Brain Behav Immun	Genetic factors underlying the bidirectional relationship between autoimmune and mental disorders - findings from a Danish population-based study.	Autoimmune traits	1,383 Danish ancestry cases, 62,656 Danish ancestry controls	NA	6p21.32	NR	rs2071538-A	0.24	8E-10		0.74	[0.67-0.82]	NR [7721839] (imputed)	N
617	chr6_mann_hap4	4278642	4278643	rs2071536	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	PSMB9, TAP1	rs2071536-T	NR	5E-8		0.0260034	[0.017-0.035] unit decrease	Affymetrix [323123] (imputed)	N
617	chr6_mann_hap4	4278642	4278643	rs2071536	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.32		rs2071536-T	0.111873	8E-10		1.0421276	[1.03-1.05]	Affymetrix, Illumina [9851866] (imputed)	N
617	chr6_mann_hap4	4279439	4279440	rs17220241	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.32	HLA-Z, TAP2, PSMB9, PSMB8-AS1, XXbac-BPG246D15.9, TAP1, PSMB8	rs17220241-T	0.02156469	1E-21	(EA, Alpha-2-macroglobulin receptor-associated protein)	1.387	[1.11-1.66] unit increase	Affymetrix [509946]	N
617	chr6_mann_hap4	4287208	4287209	rs7767288	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	6p21.32	PSMB9	rs7767288-A	0.4112	1E-11		0.02464776	[0.018-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
617	chr6_mann_hap4	4289979	4289980	rs1055559	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	6p21.32	NR	rs1055559-?	NR	9E-7		0.079	[0.047-0.111] unit increase	Illumina [at least 560000] (imputed)	N
617	chr6_mann_hap4	4289979	4289980	rs1055559	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	6p21.32	Intergenic	rs1055559-T	NR	4E-9		0.039613	[0.026-0.053] unit decrease	Illumina [13520550] (imputed)	N
617	chr6_mann_hap4	4300168	4300169	rs6903433	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.32		rs6903433-C	0.87	7E-9				Affymetrix [10369434] (imputed)	N
617	chr6_mann_hap4	4309842	4309843	rs2187689	22993228	Williams FM	2012-09-19	Ann Rheum Dis	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NA	6p21.32	PSMB9	rs2187689-C	0.08	3E-8		0.23	[0.15-0.31] unit increase	Affymetrix, Illumina [2552511] (imputed)	N
617	chr6_mann_hap4	4310417	4310417	rs11459466	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	PPP1R2P1	rs11459466-GT	NR	4E-8		0.0204679	[0.013-0.028] unit increase	Affymetrix [323858] (imputed)	N
617	chr6_mann_hap4	4310472	4310473	rs7767732	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.32		rs7767732-C	0.822	3E-21				Affymetrix [10369434] (imputed)	N
617	chr6_mann_hap4	4311888	4311889	rs10046257	22993228	Williams FM	2012-09-19	Ann Rheum Dis	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NA	6p21.32	intergenic	rs10046257-A	0.10	3E-7		0.19	[0.12-0.26] unit increase	Affymetrix, Illumina [2552511] (imputed)	N
617	chr6_mann_hap4	4312908	4312909	rs6457690	22993228	Williams FM	2012-09-19	Ann Rheum Dis	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NA	6p21.32	intergenic	rs6457690-A	0.10	9E-8		0.19	[0.12-0.26] unit increase	Affymetrix, Illumina [2552511] (imputed)	N
617	chr6_mann_hap4	4313572	4313573	rs1029296	22993228	Williams FM	2012-09-19	Ann Rheum Dis	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NA	6p21.32	intergenic	rs1029296-C	0.10	9E-8		0.19	[0.12-0.26] unit increase	Affymetrix, Illumina [2552511] (imputed)	N
617	chr6_mann_hap4	4313673	4313674	rs1029295	22993228	Williams FM	2012-09-19	Ann Rheum Dis	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NA	6p21.32	intergenic	rs1029295-C	0.10	5E-7		0.19	[0.12-0.26] unit increase	Affymetrix, Illumina [2552511] (imputed)	N
617	chr6_mann_hap4	4314125	4314126	rs6936004	22993228	Williams FM	2012-09-19	Ann Rheum Dis	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NA	6p21.32	intergenic	rs6936004-C	0.10	1E-7		0.19	[0.12-0.26] unit increase	Affymetrix, Illumina [2552511] (imputed)	N
617	chr6_mann_hap4	4314610	4314611	rs10214886	22993228	Williams FM	2012-09-19	Ann Rheum Dis	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NA	6p21.32	intergenic	rs10214886-A	0.10	2E-7		0.19	[0.12-0.26] unit increase	Affymetrix, Illumina [2552511] (imputed)	N
617	chr6_mann_hap4	4314727	4314728	rs10214760	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6p21.32	TAP1	rs10214760-?	NR	3E-6	(dimethylglycine)	0.3002602	[0.17-0.43] unit decrease	Affymetrix [at least 2500000] (imputed)	N
617	chr6_mann_hap4	4316903	4316904	rs7744666	22993228	Williams FM	2012-09-19	Ann Rheum Dis	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NA	6p21.32	intergenic	rs7744666-C	0.10	6E-8		0.2	[0.13-0.27] unit increase	Affymetrix, Illumina [2552511] (imputed)	N
617	chr6_mann_hap4	4316939	4316940	rs11969002	22993228	Williams FM	2012-09-19	Ann Rheum Dis	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NA	6p21.32	intergenic	rs11969002-A	0.10	6E-8		0.2	[0.13-0.27] unit increase	Affymetrix, Illumina [2552511] (imputed)	N
617	chr6_mann_hap4	4317943	4317944	rs9469300	22993228	Williams FM	2012-09-19	Ann Rheum Dis	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NA	6p21.32	intergenic	rs9469300-A	0.10	1E-7		0.19	[0.12-0.26] unit increase	Affymetrix, Illumina [2552511] (imputed)	N
617	chr6_mann_hap4	4319798	4319799	rs3749982	22993228	Williams FM	2012-09-19	Ann Rheum Dis	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NA	6p21.32	intergenic	rs3749982-A	0.10	1E-7		0.19	[0.12-0.26] unit increase	Affymetrix, Illumina [2552511] (imputed)	N
617	chr6_mann_hap4	4323286	4323287	rs9276916	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	Systemic lupus erythematosus	1,639 East Asian ancestry cases, 2,410 East Asian ancestry controls	NA			rs9276916-G	NR	2E-8		0.2244	[0.15-0.3] unit increase	Illumina [NR] (imputed)	N
618	chr6_mann_hap4	4327248	4327249	rs3101942	26297903	Fabbri C	2015-08-20	Prog Neuropsychopharmacol Biol Psychiatry	Genetics of long-term treatment outcome in bipolar disorder.	Manic episodes in bipolar disorder	706 European ancestry cases	NA	6p21.32	LOC100294145	rs3101942-?	NR	7E-6		1.733	[1.365-2.201]	Affymetrix [329806] (imputed)	N
618	chr6_mann_hap4	4330110	4330111	rs574560492	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs574560492-?	NR	5E-8				Affymetrix [~ 8270000] (imputed)	N
618	chr6_mann_hap4	4345445	4345446	rs117231810	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.32	Intergenic	rs117231810-?		4E-6		1.06	[1.03-1.08]	Illumina [7645193] (imputed)	N
618	chr6_mann_hap4	4345445	4345446	rs117231810	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.32	Intergenic	rs117231810-?		1E-6		1.69	[1.37-2.09]	Illumina [7645193] (imputed)	N
618	chr6_mann_hap4	4348547	4348548	rs194679	32534018	Liu X	2020-06-10	Brain Behav Immun	Genetic factors underlying the bidirectional relationship between autoimmune and mental disorders - findings from a Danish population-based study.	Autoimmune traits	1,383 Danish ancestry cases, 62,656 Danish ancestry controls	NA	6p21.32	NR	rs194679-T	0.047	1E-9		1.62	[1.4-1.87]	NR [7721839] (imputed)	N
618	chr6_mann_hap4	4357592	4357594	rs57390839	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	6p21.32	PSMB9, HLA-DMB	rs57390839-?	NR	2E-15		0.303437	[0.23-0.38] unit increase	Illumina [at least 950000] (imputed)	N
618	chr6_mann_hap4	4357592	4357594	rs57390839	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p21.32	NR	rs57390839-?	NR	1E-7		0.0931	[0.058-0.128] unit increase	Illumina [at least 560000] (imputed)	N
618	chr6_mann_hap4	4361249	4361250	rs77318243	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DMB	rs77318243-A	NR	3E-11		0.0352508	[0.025-0.046] unit decrease	Affymetrix [323858] (imputed)	N
618	chr6_mann_hap4	4361249	4361250	rs77318243	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	HLA-DMB	rs77318243-A	NR	2E-10		0.0339654	[0.024-0.044] unit decrease	Affymetrix [127266] (imputed)	N
618	chr6_mann_hap4	4365183	4365184	rs147725790	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6p21.32	NR	rs147725790-T	0.98229	2E-12		1.1804981	[1.13-1.23]	Affymetrix [15688218] (imputed)	N
618	chr6_mann_hap4	4368540	4368541	rs116560929	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.32	NR	rs116560929-A	0.01045	3E-9	(FHL1)	0.008308	NR unit increase	Illumina [1671387] (imputed)	N
618	chr6_mann_hap4	4368540	4368541	rs116560929	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.32	NR	rs116560929-A	0.01045	3E-10	(TAGLN)	0.4341	NR unit increase	Illumina [1671387] (imputed)	N
618	chr6_mann_hap4	4368540	4368541	rs116560929	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.32	NR	rs116560929-A	0.01045	2E-8	(CNN2)	0.01914	NR unit increase	Illumina [1671387] (imputed)	N
618	chr6_mann_hap4	4369024	4369025	rs2395296	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs2395296-A	NR	9E-8		1.089	[1.055-1.124]	Affymetrix [7846216] (imputed)	N
618	chr6_mann_hap4	4370456	4370457	rs1480380	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p21.32	HLA-DMB, HLA-DMA	rs1480380-A	0.252	6E-23				Illumina [118177]	N
618	chr6_mann_hap4	4370456	4370457	rs1480380	23453885	Smoller JW	2013-02-27	Lancet	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NA	6p21.32	NR	rs1480380-C	0.908	6E-7	(Modelling analysis)			NR [1252901] (imputed)	N
618	chr6_mann_hap4	4370456	4370457	rs1480380	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.32	intergenic	rs1480380-T	0.0877	4E-39		3.05	[NR]	Illumina [242824]	N
618	chr6_mann_hap4	4371936	4371937	rs73396800	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	6p21.32	NR	rs73396800-G	NR	4E-16		1.1904762	[NR]	Illumina [7158791] (imputed)	N
618	chr6_mann_hap4	4373061	4373062	rs16871226	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	NR	rs16871226-G	0.0244821228239845	2E-6	(IGP67)	0.5182	[0.3-0.73] unit increase	Illumina [~ 2500000] (imputed)	N
618	chr6_mann_hap4	4376786	4376787	rs146693865	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.32	NR	rs146693865-G	0.01045	3E-9	(FHL1)	0.008308	NR unit increase	Illumina [1671387] (imputed)	N
618	chr6_mann_hap4	4376786	4376787	rs146693865	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.32	NR	rs146693865-G	0.01045	3E-10	(TAGLN)	0.4341	NR unit increase	Illumina [1671387] (imputed)	N
618	chr6_mann_hap4	4376786	4376787	rs146693865	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.32	NR	rs146693865-G	0.01045	2E-8	(CNN2)	0.01914	NR unit increase	Illumina [1671387] (imputed)	N
618	chr6_mann_hap4	4381794	4381795	rs209474	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.32		rs209474-A	0.623	4E-15				Affymetrix [10369434] (imputed)	N
618	chr6_mann_hap4	4381794	4381795	rs209474	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	6p21.32	HLA-DMA	rs209474-G	0.377123	1E-12		0.016615335	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
618	chr6_mann_hap4	4381794	4381795	rs209474	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	6p21.32	HLA-DMA	rs209474-G	0.377106	6E-15		0.018046945	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
618	chr6_mann_hap4	4381794	4381795	rs209474	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	6p21.32	NR	rs209474-A	0.624456	7E-9		0.0127924	[0.0085-0.0171] unit decrease	NR [NR]	N
618	chr6_mann_hap4	4381794	4381795	rs209474	29121268	Amare AT	2017-11-09	JAMA Psychiatry	Association of Polygenic Score for Schizophrenia and HLA Antigen and Inflammation Genes With Response to Lithium in Bipolar Affective Disorder: A Genome-Wide Association Study.	Bipolar disorder lithium response (continuous) or schizophrenia	2,366 European ancestry lithium treated bipolar disorder cases, 220 Asian ancestry lithium treated bipolar disorder cases, 36,989 schizophrenia cases, controls (see Ripke et al 2014 PMID:25056061)	NA	6p21.32	HLA, DMA	rs209474-A		2E-8				NR [NR] (imputed)	N
618	chr6_mann_hap4	4385527	4385528	rs209476	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.32		rs209476-G	0.683	9E-16				Affymetrix [10369434] (imputed)	N
618	chr6_mann_hap4	4386203	4386204	rs9276931	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	6p21.32	HLA-DMA	rs9276931-A	0.8852	5E-23		0.0292	[0.023-0.035] unit decrease	Affymetrix [18391927] (imputed)	N
618	chr6_mann_hap4	4392374	4392375	rs115249787	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.32	NR	rs115249787-A	0.01045	3E-9	(FHL1)	0.008308	NR unit increase	Illumina [1671387] (imputed)	N
618	chr6_mann_hap4	4392374	4392375	rs115249787	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.32	NR	rs115249787-A	0.01045	3E-10	(TAGLN)	0.4341	NR unit increase	Illumina [1671387] (imputed)	N
618	chr6_mann_hap4	4392374	4392375	rs115249787	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.32	NR	rs115249787-A	0.01045	2E-8	(CNN2)	0.01914	NR unit increase	Illumina [1671387] (imputed)	N
618	chr6_mann_hap4	4402752	4402753	rs3097644	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p21.32	BRD2	rs3097644-G		2E-8		0.02	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
618	chr6_mann_hap4	4402921	4402924	rs3918142	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p21.32	NR	rs3918142-?	NR	4E-7		0.117	[0.072-0.162] unit decrease	Illumina [at least 560000] (imputed)	N
618	chr6_mann_hap4	4403251	4403252	rs34530779	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.32	NR	rs34530779-A	0.01045	3E-9	(FHL1)	0.008308	NR unit increase	Illumina [1671387] (imputed)	N
618	chr6_mann_hap4	4403251	4403252	rs34530779	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.32	NR	rs34530779-A	0.01045	3E-10	(TAGLN)	0.4341	NR unit increase	Illumina [1671387] (imputed)	N
618	chr6_mann_hap4	4403251	4403252	rs34530779	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.32	NR	rs34530779-A	0.01045	2E-8	(CNN2)	0.01914	NR unit increase	Illumina [1671387] (imputed)	N
618	chr6_mann_hap4	4403544	4403545	rs76088152	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p21.32	NR	rs76088152-?	NR	8E-9		0.2377	[0.16-0.32] unit decrease	Illumina [at least 560000] (imputed)	N
618	chr6_mann_hap4	4406024	4406025	rs1049526	28008999	Ostrowski J	2016-12-23	Sci Rep	Genetic architecture differences between pediatric and adult-onset inflammatory bowel diseases in the Polish population.	Ulcerative colitis	269 Polish ancestry child cases, 259 Polish ancestry adult cases, 582 Polish ancestry controls	121 Polish ancestry child cases, 85 Polish ancestry adult cases, 352 Polish ancestry controls	6p21.32	BRD2	rs1049526-?		3E-7	(Adults)	2.697503	[1.87-3.90]	Illumina [2612357]	N
618	chr6_mann_hap4	4406024	4406025	rs1049526	28008999	Ostrowski J	2016-12-23	Sci Rep	Genetic architecture differences between pediatric and adult-onset inflammatory bowel diseases in the Polish population.	Ulcerative colitis	269 Polish ancestry child cases, 259 Polish ancestry adult cases, 582 Polish ancestry controls	121 Polish ancestry child cases, 85 Polish ancestry adult cases, 352 Polish ancestry controls	6p21.32	BRD2	rs1049526-?		2E-8		2.3810558	[1.74-3.26]	Illumina [2612357]	N
618	chr6_mann_hap4	4406024	4406025	rs1049526	28008999	Ostrowski J	2016-12-23	Sci Rep	Genetic architecture differences between pediatric and adult-onset inflammatory bowel diseases in the Polish population.	Inflammatory bowel disease	622 Polish ancestry child cases, 496 Polish ancestry adult cases, 582 Polish ancestry controls	192 Polish ancestry child cases, 185 Polish ancestry adult cases, 352 Polish ancestry controls	6p21.32	BRD2	rs1049526-?	NR	9E-10	(Adult)	2.659634	[1.93-3.66]	Illumina [2612357]	N
618	chr6_mann_hap4	4406024	4406025	rs1049526	28008999	Ostrowski J	2016-12-23	Sci Rep	Genetic architecture differences between pediatric and adult-onset inflammatory bowel diseases in the Polish population.	Inflammatory bowel disease	622 Polish ancestry child cases, 496 Polish ancestry adult cases, 582 Polish ancestry controls	192 Polish ancestry child cases, 185 Polish ancestry adult cases, 352 Polish ancestry controls	6p21.32	BRD2	rs1049526-?	NR	5E-11		2.434453	[1.83-3.24]	Illumina [2612357]	N
618	chr6_mann_hap4	4406024	4406025	rs1049526	28008999	Ostrowski J	2016-12-23	Sci Rep	Genetic architecture differences between pediatric and adult-onset inflammatory bowel diseases in the Polish population.	Inflammatory bowel disease	622 Polish ancestry child cases, 496 Polish ancestry adult cases, 582 Polish ancestry controls	192 Polish ancestry child cases, 185 Polish ancestry adult cases, 352 Polish ancestry controls	6p21.32	BRD2	rs1049526-?	NR	2E-8	(Children)	2.3504539	[1.73-3.19]	Illumina [2612357]	N
618	chr6_mann_hap4	4406024	4406025	rs1049526	28008999	Ostrowski J	2016-12-23	Sci Rep	Genetic architecture differences between pediatric and adult-onset inflammatory bowel diseases in the Polish population.	Crohn's disease	353 Polish ancestry child cases, 237 Polish ancestry adult cases, 582 Polish ancestry controls	71 Polish ancestry child cases, 100 Polish ancestry adult cases, 352 Polish ancestry controls	6p21.32	BRD2	rs1049526-?	NR	5E-9		2.4428785	[1.79-3.33]	Illumina [2612357]	N
618	chr6_mann_hap4	4406024	4406025	rs1049526	28008999	Ostrowski J	2016-12-23	Sci Rep	Genetic architecture differences between pediatric and adult-onset inflammatory bowel diseases in the Polish population.	Crohn's disease	353 Polish ancestry child cases, 237 Polish ancestry adult cases, 582 Polish ancestry controls	71 Polish ancestry child cases, 100 Polish ancestry adult cases, 352 Polish ancestry controls	6p21.32	BRD2	rs1049526-?	NR	3E-7	(Children)	2.4273632	[1.72-3.42]	Illumina [2612357]	N
618	chr6_mann_hap4	4406024	4406025	rs1049526	28008999	Ostrowski J	2016-12-23	Sci Rep	Genetic architecture differences between pediatric and adult-onset inflammatory bowel diseases in the Polish population.	Crohn's disease	353 Polish ancestry child cases, 237 Polish ancestry adult cases, 582 Polish ancestry controls	71 Polish ancestry child cases, 100 Polish ancestry adult cases, 352 Polish ancestry controls	6p21.32	BRD2	rs1049526-?	NR	3E-6	(Adults)	2.530363	[1.73-3.70]	Illumina [2612357]	N
618	chr6_mann_hap4	4410496	4410497	rs3097645	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	NR	rs3097645-C	0.87438328769575	7E-6	(IGP59)	0.2057	[0.12-0.3] unit increase	Illumina [~ 2500000] (imputed)	N
618	chr6_mann_hap4	4410496	4410497	rs3097645	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	NR	rs3097645-C	0.874270331235955	2E-6	(IGP42)	0.2151	[0.13-0.3] unit decrease	Illumina [~ 2500000] (imputed)	N
618	chr6_mann_hap4	4410496	4410497	rs3097645	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	NR	rs3097645-C	0.874157767431399	5E-6	(IGP2)	0.2092	[0.12-0.3] unit decrease	Illumina [~ 2500000] (imputed)	N
618	chr6_mann_hap4	4410496	4410497	rs3097645	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	NR	rs3097645-C	0.873857556055831	6E-6	(IGP16)	0.2057	[0.12-0.29] unit decrease	Illumina [~ 2500000] (imputed)	N
618	chr6_mann_hap4	4410496	4410497	rs3097645	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	NR	rs3097645-C	0.873550828800713	6E-6	(IGP61)	0.206	[0.12-0.3] unit increase	Illumina [~ 2500000] (imputed)	N
618	chr6_mann_hap4	4410496	4410497	rs3097645	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	NR	rs3097645-C	0.873514573726542	3E-6	(IGP58)	0.2131	[0.12-0.3] unit increase	Illumina [~ 2500000] (imputed)	N
618	chr6_mann_hap4	4410496	4410497	rs3097645	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	NR	rs3097645-C	0.872971129118433	6E-7	(IGP65)	0.2253	[0.14-0.31] unit increase	Illumina [~ 2500000] (imputed)	N
618	chr6_mann_hap4	4417248	4417249	rs3130600	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	6p21.32	NR	rs3130600-?	NR	2E-6		0.079	[0.046-0.112] unit increase	Illumina [at least 560000] (imputed)	N
618	chr6_mann_hap4	4417713	4417714	rs140545087	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	6p21.32	NR	rs140545087-?	NR	3E-10				Affymetrix [~ 8270000] (imputed)	N
618	chr6_mann_hap4	4417713	4417714	rs140545087	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs140545087-?	NR	5E-9				Affymetrix [~ 8270000] (imputed)	N
618	chr6_mann_hap4	4418580	4418581	rs9500927	21804548	Hirota T	2011-07-31	Nat Genet	Genome-wide association study identifies three new susceptibility loci for adult asthma in the Japanese population.	Asthma	1,532 Japanese ancestry cases, 3,304 Japanese ancestry controls	5,639 Japanese ancestry cases, 24,608 Japanese ancestry controls	6p21.32	HLA-DOA	rs9500927-T	0.26	4E-9		1.13	[1.09-1.18]	Illumina [458847]	N
618	chr6_mann_hap4	4418840	4418841	rs172275	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	334,944 European ancestry, NR ancestry individuals	NA	6p21.32		rs172275-?	NR	5E-8				Affymetrix [NR] (imputed)	N
618	chr6_mann_hap4	4420086	4420087	rs11757367	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.32		rs11757367-G	0.832	3E-15				Affymetrix [10369434] (imputed)	N
618	chr6_mann_hap4	4423899	4423900	rs35520555	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.32		rs35520555-A	0.886	3E-8				Affymetrix [10369434] (imputed)	N
618	chr6_mann_hap4	4429595	4429596	rs3128935	24024966	Teumer A	2013-08-14	J Clin Periodontol	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (CDC/AAP)	up to 3,915 European ancestry individuals	NA	6p21.32	HLA-DOA	rs3128935-T	0.97	9E-6	(Age 20-60 years)	2.28	[1.59-3.28]	Affymetrix, Illumina [up to 17585496] (imputed)	N
618	chr6_mann_hap4	4430790	4430791	rs9276975	25758996	Pirastu N	2015-03-11	Eur J Hum Genet	Genome-wide association analysis on five isolated populations identifies variants of the HLA-DOA gene associated with white wine liking.	White wine liking	381 Carlantino (founder/genetic isolated) individuals, 744 Friuli Venezia Giulia (founder/genetic isolated) individuals, 1,115 Val Borbera (founder/genetic isolated) individuals	1,261 Erasmus Rucphen (founder/genetic isolated) individuals, 335 Silk Road individuals	6p21.32	HLA-DOA	rs9276975-T	0.15	2E-8		0.0539	[NR] unit increase	Illumina [9969492] (imputed)	N
618	chr6_mann_hap4	4430790	4430791	rs9276975	25758996	Pirastu N	2015-03-11	Eur J Hum Genet	Genome-wide association analysis on five isolated populations identifies variants of the HLA-DOA gene associated with white wine liking.	Red wine liking	398 Carlantino (founder/genetic isolated) individuals, 751 Friuli Venezia Giulia (founder/genetic isolated) individuals, 1,122 Val Borbera (founder/genetic isolated) individuals	1,246 Erasmus Rucphen (founder/genetic isolated) individuals, 353 Silk Road individuals	6p21.32	HLA-DOA	rs9276975-T	0.15	8E-6		0.0419	[NR] unit increase	Illumina [6967159] (imputed)	N
618	chr6_mann_hap4	4432124	4432125	rs378352	25802187	Jiang DK	2015-04-28	Hepatology	Genetic variants in five novel loci including CFB and CD40 predispose to chronic hepatitis B.	Chronic hepatitis B infection	2,514 Chinese ancestry cases, 1,130 Chinese ancestry controls	6,600 Chinese ancestry cases, 8,127 Chinese ancestry controls	6p21.32	HLA-DOA	rs378352-T	0.39	1E-23		1.26	[1.20-1.31]	Illumina [3680900] (imputed)	N
618	chr6_mann_hap4	4432204	4432205	rs399604	22139419	Gieger C	2011-11-30	Nature	New gene functions in megakaryopoiesis and platelet formation.	Platelet count	38,891 European ancestry individuals, 1,661 Val Borbera (founder/genetic isolate) individuals, 521 Carlantino (founder/genetic isolate) individuals, 1,198 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,213 South Tyrolean (founder/genetic isolate) individuals, 890 Sorbian (founder/genetic isolate) individuals, 4,292 Sardinian (founder/genetic isolate) individuals	Up to 16,949 European ancestry individuals, 854 Cliento (founder/genetic isolate) individuals, 1,035 Talana (founder/genetic isolate) individuals	6p21.32	HLA-DOA	rs399604-C	NR	1E-10		2.346	[1.63-3.06] 10^9/l increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
618	chr6_mann_hap4	4432701	4432702	rs2267647	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.32		rs2267647-A	0.331	4E-13				Affymetrix [10369434] (imputed)	N
618	chr6_mann_hap4	4434610	4434611	rs381218	32534018	Liu X	2020-06-10	Brain Behav Immun	Genetic factors underlying the bidirectional relationship between autoimmune and mental disorders - findings from a Danish population-based study.	Autoimmune traits	1,383 Danish ancestry cases, 62,656 Danish ancestry controls	NA	6p21.32	NR	rs381218-T	0.29	1E-10		1.31	[1.21-1.42]	NR [7721839] (imputed)	N
618	chr6_mann_hap4	4440937	4440938	rs11964504	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	6p21.32	NR	rs11964504-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
619	chr6_mann_hap4	4483140	4483141	rs6457709	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6p21.32		rs6457709-?	NR	2E-6		0.94528	[0.92-0.97]	NR [685523]	N
619	chr6_mann_hap4	4483140	4483141	rs6457709	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Hepatitis B	1,425 European ancestry cases, 218,180 European ancestry controls	NA	6p21.32	NR	rs6457709-?	NR	8E-6		0.1819	[0.1-0.26] unit increase	Illumina [at least 560000] (imputed)	N
619	chr6_mann_hap4	4483297	4483298	rs422544	32771030	Tangtanatakul P	2020-08-08	Arthritis Res Ther	Meta-analysis of genome-wide association study identifies FBN2 as a novel locus associated with systemic lupus erythematosus in Thai population.	Systemic lupus erythematosus	487 Thai cases, 1,606 Thai controls	405 Thai cases, 1,590 Thai controls	6p21.32	HLA-DOA, HLA-DPA1	rs422544-C	0.15	5E-8		0.6232	[NR]	Illumina [421909] (imputed)	N
619	chr6_mann_hap4	4486174	4486175	rs9277332	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Keratinocyte cancer (MTAG)	at least 18,538 European ancestry cases, at least 340,302 European ancestry controls	NA	6p21.32	HLA-DPA1	rs9277332-G	0.744531	2E-9		1.06	[1.04-1.08]	Affymetrix [7600000] (imputed)	N
619	chr6_mann_hap4	4486253	4486254	rs588997	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	6p21.32	NR	rs588997-A	NR	4E-6	(female)	0.1185	[0.068-0.169] unit decrease	Illumina [11133794] (imputed)	N
619	chr6_mann_hap4	4486974	4486975	rs6457710	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	6p21.32	HLA-DPA1	rs6457710-G	0.268971	2E-11		0.017609773	[0.012-0.023] unit increase	Affymetrix [93095623] (imputed)	N
619	chr6_mann_hap4	4489151	4489152	rs35449774	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.32	NR	rs35449774-?	NR	3E-11				Affymetrix [~ 8270000] (imputed)	N
619	chr6_mann_hap4	4489151	4489152	rs35449774	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs35449774-?	NR	2E-16				Affymetrix [~ 8270000] (imputed)	N
619	chr6_mann_hap4	4489151	4489152	rs35449774	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	6p21.32	HLA-DPA1, HLA-DPB1, HLA-DPB2	rs35449774-T	0.142188	7E-11		1.0714098	[1.05-1.09]	Affymetrix [8274727] (imputed)	N
619	chr6_mann_hap4	4490404	4490405	rs1042901	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	6p21.32	HLA-DPA1	rs1042901-C	0.119144	1E-14		0.029356208	[0.022-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
619	chr6_mann_hap4	4490561	4490562	rs3077	33736632	Zeng Z	2021-03-18	BMC Med Genomics	Genome-wide association study identifies new loci associated with risk of HBV infection and disease progression.	Persistent hepatitis B virus infection	587 Chinese ancestry persistent cases, 275 Chinese ancestry clearance controls	NA	6p21.32	HLA-DPA1	rs3077-A	0.4145	7E-9		0.5007	NR	Affymetrix [607153]	N
619	chr6_mann_hap4	4490561	4490562	rs3077	25802187	Jiang DK	2015-04-28	Hepatology	Genetic variants in five novel loci including CFB and CD40 predispose to chronic hepatitis B.	Chronic hepatitis B infection	2,514 Chinese ancestry cases, 1,130 Chinese ancestry controls	6,600 Chinese ancestry cases, 8,127 Chinese ancestry controls	6p21.32	HLA-DPA1	rs3077-A	0.66	1E-53		1.45	[1.39-1.52]	Illumina [3680900] (imputed)	N
619	chr6_mann_hap4	4490561	4490562	rs3077	23760081	Kim YJ	2013-06-10	Hum Mol Genet	A genome-wide association study identified new variants associated with the risk of chronic hepatitis B.	Chronic hepatitis B infection	400 Korean ancestry cases, 1,000 Korean ancestry controls	971 Korean ancestry cases, 1,938 Korean ancestry controls	6p21.32	HLA-DP	rs3077-?	NR	5E-39		1.89	[1.69-2.08]	Illumina [719265]	N
619	chr6_mann_hap4	4490561	4490562	rs3077	22737229	Nishida N	2012-06-21	PLoS One	Genome-wide association study confirming association of HLA-DP with protection against chronic hepatitis B and viral clearance in Japanese and Korean.	Hepatitis B (viral clearance)	181 East Asian ancestry HBV carriers, 184 East Asian ancestry controls, 185 East Asian ancestry spontaneously HBV-resolved individuals	Up to 8,045 East Asian ancestry HBV carriers, up to 9,003 East Asian ancestry controls, up to 3,995 East Asian ancestry spontaneously HBV-resolved individuals	6p21.32	HLA-DPA1	rs3077-C	0.60	4E-45	(Protective effects against CHB)	1.82	[1.67-1.96]	Affymetrix [597789]	N
619	chr6_mann_hap4	4490561	4490562	rs3077	22737229	Nishida N	2012-06-21	PLoS One	Genome-wide association study confirming association of HLA-DP with protection against chronic hepatitis B and viral clearance in Japanese and Korean.	Hepatitis B (viral clearance)	181 East Asian ancestry HBV carriers, 184 East Asian ancestry controls, 185 East Asian ancestry spontaneously HBV-resolved individuals	Up to 8,045 East Asian ancestry HBV carriers, up to 9,003 East Asian ancestry controls, up to 3,995 East Asian ancestry spontaneously HBV-resolved individuals	6p21.32	HLA-DPA1	rs3077-C	0.60	1E-9	(Clearance of HBV)	1.67	[1.43-2.0]	Affymetrix [597789]	N
619	chr6_mann_hap4	4490561	4490562	rs3077	21750111	Mbarek H	2011-07-12	Hum Mol Genet	A genome-wide association study of chronic hepatitis B identified novel risk locus in a Japanese population.	Hepatitis B	458 Japanese ancestry cases, 2,056 Japanese ancestry controls	2,209 Japanese ancestry cases, 4,440 Japanese ancestry controls	6p21.32	HLA-DPA1	rs3077-G	0.60	2E-61		1.87	[1.73-2.01]	Illumina [423627]	N
619	chr6_mann_hap4	4490959	4490960	rs79341334	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	6p21.32	NR	rs79341334-?	NR	4E-9	(MIC-A)	1.11932	[0.75-1.49] unit increase	Illumina [11901634] (imputed)	N
619	chr6_mann_hap4	4491249	4491250	rs73739621	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (multivariate analysis)	477,968 European ancestry individuals	NA	6p21.32	HLA, DPA1	rs73739621-C	0.096	2E-10		0.05	[0.034-0.066] unit decrease	NR [NR] (imputed)	N
619	chr6_mann_hap4	4491249	4491250	rs73739621	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (age of onset)	117,130 European ancestry individuals	NA	6p21.32	HLA-DPA1	rs73739621-C	0.096	4E-11		0.051	[0.035-0.067] unit decrease	NR [7647814] (imputed)	N
619	chr6_mann_hap4	4491353	4491354	rs2301227	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	6p21.32	NR	rs2301227-A	NR	5E-6	(female)	0.1072	[0.061-0.153] unit decrease	Illumina [11133794] (imputed)	N
619	chr6_mann_hap4	4491363	4491364	rs111789468	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	6p21.32	HLA-DPA1	rs111789468-?	NR	2E-13		1.092	[1.07-1.12]	Affymetrix [9000000] (imputed)	N
619	chr6_mann_hap4	4491363	4491364	rs111789468	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	6p21.32	HLA-DPA1	rs111789468-T	NR	4E-6		1.082	[1.05-1.12]	Affymetrix [9000000] (imputed)	N
619	chr6_mann_hap4	4492116	4492117	rs34596699	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	Systemic lupus erythematosus	1,639 East Asian ancestry cases, 2,410 East Asian ancestry controls	NA			rs34596699-T	NR	2E-8		0.2177	[0.14-0.29] unit increase	Illumina [NR] (imputed)	N
619	chr6_mann_hap4	4492854	4492855	rs74292032	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6p21.32	HLA-DPA1	rs74292032-G	0.014974	1E-15		0.07435001	[0.056-0.093] unit decrease	Affymetrix [93095623] (imputed)	N
619	chr6_mann_hap4	4497164	4497165	rs9277341	28029757	Merkel PA	2016-12-28	Arthritis Rheumatol	Identification of Functional and Expression Polymorphisms Associated With Risk for Antineutrophil Cytoplasmic Autoantibody-Associated Vasculitis.	Antineutrophil cytoplasmic antibody-associated vasculitis	1,015 European ancestry granulomatosis with polyangiitis cases, 206 European ancestry microscopic polyangiitis cases, 3,258 European ancestry controls.	541 European ancestry granulomatosis with polyangiitis cases, 30 European ancestry microscopic polyangiitis cases, 1,465 European ancestry controls.	6p21.32	HLA-DPA1	rs9277341-T	0.70	6E-71		2.44	2.21-2.69	Affymetrix [at least 333035] (imputed)	N
619	chr6_mann_hap4	4497343	4497344	rs9277342	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	6p21.32	HLA-DPA1	rs9277342-T	0.21017	8E-10		0.017251292	[0.012-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
619	chr6_mann_hap4	4497637	4497638	rs4345439	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Graves' disease	2,809 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	6p21.32		rs4345439-T	0.47048229	2E-67		0.48648387	[0.43-0.54] unit increase	Illumina [13429311] (imputed)	N
619	chr6_mann_hap4	4498612	4498613	rs9357156	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Graves' disease	1,678 European ancestry cases, 456,942 European ancestry controls, 2,809 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	6p21.32		rs9357156-C	NR	1E-68		0.4396	[0.39-0.49] unit increase	Affymetrix, Illumina [25841587] (imputed)	N
619	chr6_mann_hap4	4499273	4499274	rs2856830	30527956	Rhodes CJ	2018-12-05	Lancet Respir Med	Genetic determinants of risk in pulmonary arterial hypertension: international genome-wide association studies and meta-analysis.	Pulmonary arterial hypertension	2,085 European ancestry cases, 9,659 European ancestry controls	NA	6p21.32	HLA-DPA1, HLA-DPB1	rs2856830-C	0.12	8E-20		1.56	[1.42-1.71]	Illumina [~ 7727590] (imputed)	N
619	chr6_mann_hap4	4500419	4500420	rs987870	21814517	Noguchi E	2011-07-21	PLoS Genet	Genome-wide association study identifies HLA-DP as a susceptibility gene for pediatric asthma in Asian populations.	Asthma	938 Japanese ancestry cases, 2,376 Japanese ancestry controls	1653 East Asian ancestry cases, 1453 East Asian ancestry controls	6p21.32	HLA, DPB1	rs987870-C	0.14	2E-10		1.4	[1.26-1.55]	Illumina [450326]	N
619	chr6_mann_hap4	4500419	4500420	rs987870	21779181	Gorlova O	2011-07-14	PLoS Genet	Identification of novel genetic markers associated with clinical phenotypes of systemic sclerosis through a genome-wide association strategy.	Systemic sclerosis	2,296 European ancestry cases, 5,172 European ancestry controls	3,175 European ancestry cases, 4,210 European ancestry controls	6p21.32	HLA-DPA1, HLA-DPB1	rs987870-?	0.15	2E-20	(ATA positive)	2.09	[1.78-2.45]	Illumina [NR] (imputed)	N
619	chr6_mann_hap4	4501554	4501555	rs115910061	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs115910061-T	0.059	5E-12		0.721	[0.63-0.81]	Illumina [11270530] (imputed)	N
619	chr6_mann_hap4	4502532	4502533	rs6415133	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p21.32	NR	rs6415133-?	NR	6E-16		0.0994	[0.075-0.124] unit decrease	Illumina [at least 560000] (imputed)	N
619	chr6_mann_hap4	4502800	4502801	rs2213309	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	6p21.32	NR	rs2213309-T	0.55	8E-7	(female)	0.1155	[0.07-0.161] unit increase	Illumina [11133794] (imputed)	N
619	chr6_mann_hap4	4503045	4503046	rs2856816	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.32		rs2856816-T	0.908	5E-23				Affymetrix [10369434] (imputed)	N
619	chr6_mann_hap4	4503045	4503046	rs2856816	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	6p21.32	HLA-DPB1, HLA-DPA1	rs2856816-C	0.092	2E-17		0.0523189	[0.04-0.064] unit decrease	Affymetrix [~ 2500000] (imputed)	N
619	chr6_mann_hap4	4503045	4503046	rs2856816	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	6p21.32	HLA-DPB1, HLA-DPA1	rs2856816-C	0.092	7E-15		0.04810228	[0.036-0.06] unit decrease	Affymetrix [~ 2500000] (imputed)	N
619	chr6_mann_hap4	4503243	4503244	rs7750458	27153935	Zhang CE	2016-05-06	J Dermatol	Variation at HLA-DPB1 is associated with dermatomyositis in Chinese population.	Dermatomyositis	127 Han Chinese ancestry case, 1,566 Han Chinese ancestry controls	NA	6p21.32	HLA-DPB1, HLA-DMB	rs7750458-A	0.09	1E-9		2.5	[1.80-3.44]	Illumina [812602]	N
619	chr6_mann_hap4	4503244	4503245	rs56934772	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	6p21.32	HLA-DPB1	rs56934772-T	NR	5E-8		0.259632	[0.17-0.35] unit increase	Illumina [at least 950000] (imputed)	N
619	chr6_mann_hap4	4503511	4503512	rs3135022	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	6p21.32	NR	rs3135022-A	NR	3E-6	(female)	0.1098	[0.064-0.156] unit decrease	Illumina [11133794] (imputed)	N
619	chr6_mann_hap4	4504271	4504272	rs2021408	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.32		rs2021408-T	0.833	1E-17				Affymetrix [10369434] (imputed)	N
619	chr6_mann_hap4	4504271	4504272	rs2021408	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.32		rs2021408-C	0.840557	3E-7		1.0296161	[1.02-1.04]	Affymetrix, Illumina [9851866] (imputed)	N
619	chr6_mann_hap4	4504287	4504288	rs2856821	34450027	Boer CG	2021-08-24	Cell	Deciphering osteoarthritis genetics across 826,690 individuals from 9 populations.	Osteoarthritis of the hip or knee	88,842 European ancestry cases, 397,208 European ancestry controls, 899 Japanese ancestry cases, 3,396 Japanese ancestry controls	NA	6p21.32		rs2856821-T	0.7896	6E-9		1.0471791	[1.031089783-1.063519526]	Affymetrix, Illumina [NR] (imputed)	N
619	chr6_mann_hap4	4504287	4504288	rs2856821	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Osteoarthritis	77,052 European ancestry cases, 378,169 European ancestry controls	NA	6p21.32	NR	rs2856821-T	0.79	1E-9		1.04	[1.03-1.06]	Affymetrix, Illumina [up to 17000000] (imputed)	N
619	chr6_mann_hap4	4504297	4504298	rs3097670	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	6p21.32	HLA-DPA1	rs3097670-G	0.88	8E-12		1.064	[1.05-1.08]	Affymetrix, Illumina [8307659] (imputed)	N
619	chr6_mann_hap4	4504576	4504577	rs1431403	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs1431403-T	0.39	1E-22		0.848	[0.81-0.88]	Illumina [11270530] (imputed)	N
619	chr6_mann_hap4	4505011	4505012	rs3135024	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Aspartate aminotransferase levels	386,570 British ancestry individuals, 10,617 Asian or Asian British individuals, 7,426 Black or Black British individuals, 2,321 Chinese ancestry individuals	NA	6p21.32	HLA-DPB1	rs3135024-?	NR	8E-24		0.0034	[0.0028-0.004] unit increase	Affymetrix [21347608] (imputed)	N
619	chr6_mann_hap4	4505011	4505012	rs3135024	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Alanine aminotransferase levels	387,859 British ancestry individuals, 10,635 Asian or Asian British individuals, 7,468 Black or Black British individuals, 2,338 Chinese ancestry individuals	NA	6p21.32	HLA-DPB1	rs3135024-?	NR	3E-10		0.0034	[0.0024-0.0044] unit increase	Affymetrix [21347608] (imputed)	N
619	chr6_mann_hap4	4505011	4505012	rs3135024	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DPA1, HLA-DPB1, RPL32P1	rs3135024-C	NR	2E-8		0.0184048	[0.012-0.025] unit decrease	Affymetrix [321016] (imputed)	N
619	chr6_mann_hap4	4505157	4505158	rs3097671	34197731	Li Q	2021-06-23	Am J Hum Genet	Whole-exome sequencing reveals common and rare variants in immunologic and neurological genes implicated in achalasia.	Idiopathic achalasia	280 Chinese Han ancestry cases, 1,121 Chinese Han ancestry controls	NA	6p21.32		rs3097671-C	0.102	3E-7		2.29	[1.67-3.15]	Illumina [476650] (imputed)	N
619	chr6_mann_hap4	4505647	4505648	rs3130169	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs3130169-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
619	chr6_mann_hap4	4506005	4506006	rs12722013	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	HLA-DPB1	rs12722013-C	0.049	1E-15	(C-C motif chemokine 21, CCL21.2516.57.3)	0.45	[0.33-0.57] unit increase	Affymetrix [10572788] (imputed)	N
619	chr6_mann_hap4	4506011	4506012	rs1126511	34197731	Li Q	2021-06-23	Am J Hum Genet	Whole-exome sequencing reveals common and rare variants in immunologic and neurological genes implicated in achalasia.	Idiopathic achalasia	100 Chinese Han ancestry cases, 313 Chinese Han ancestry controls	230 Chinese Han ancestry cases, 1,760 Chinese Han ancestry controls	6p21.32		rs1126511-T	0.181	2E-9		1.83		Illumina [192329]	N
619	chr6_mann_hap4	4506083	4506084	rs9277348	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hypothyroidism	1,114 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	6p21.32		rs9277348-C	0.428105722	8E-16		0.3692923	[0.28-0.46] unit increase	Illumina [13429045] (imputed)	N
619	chr6_mann_hap4	4506151	4506152	rs1042133	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	6p21.32	HLA-DPB1	rs1042133-C	0.15836	8E-32		0.036145743	[0.03-0.042] unit increase	Affymetrix [93095623] (imputed)	N
619	chr6_mann_hap4	4506151	4506152	rs1042133	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	6p21.32	HLA-DPB1	rs1042133-C	0.1567	3E-12		0.03465061	[0.025-0.044] unit increase	Affymetrix [~ 2500000] (imputed)	N
619	chr6_mann_hap4	4506206	4506207	rs1042151	32004448	Savage SA	2020-01-30	Am J Hum Genet	Genome-wide Association Study Identifies HLA-DPB1 as a Significant Risk Factor for Severe Aplastic Anemia.	Severe aplastic anemia	359 European ancestry cases, 1,396 European ancestry controls	175 European ancestry cases, 1,059 European ancestry controls	6p21.32	HLA-DPB1	rs1042151-?	NR	2E-13		1.75	[1.50-2.03]	Illumina [688067]	N
619	chr6_mann_hap4	4506206	4506207	rs1042151	23180272	Park BL	2012-11-21	Hum Genet	Genome-wide association study of aspirin-exacerbated respiratory disease in a Korean population.	Aspirin exacerbated respiratory disease in asthmatics	117 Korean ancestry cases, 685 Korean ancestry controls	142 Korean ancestry cases, 996 Korean ancestry controls	6p21.32	HLA-DPB1	rs1042151-G	0.083	5E-7		2.4	[1.68-3.42]	Illumina [430486]	N
619	chr6_mann_hap4	4506234	4506234	rs141530233	28029757	Merkel PA	2016-12-28	Arthritis Rheumatol	Identification of Functional and Expression Polymorphisms Associated With Risk for Antineutrophil Cytoplasmic Autoantibody-Associated Vasculitis.	Antineutrophil cytoplasmic antibody-associated vasculitis	1,015 European ancestry granulomatosis with polyangiitis cases, 206 European ancestry microscopic polyangiitis cases, 3,258 European ancestry controls.	541 European ancestry granulomatosis with polyangiitis cases, 30 European ancestry microscopic polyangiitis cases, 1,465 European ancestry controls.	6p21.32	HLA-DPB1	rs141530233-?	0.7	1E-89		2.99	[2.69-3.33]	Affymetrix [at least 333035] (imputed)	N
619	chr6_mann_hap4	4506239	4506240	rs9277356	31243853	Chung S	2019-06-27	J Viral Hepat	GWAS identifying HLA-DPB1 gene variants associated with responsiveness to hepatitis B virus vaccination in Koreans: Independent association of HLA-DPB1*04:02 possessing rs1042169 G - rs9277355 C - rs9277356 A.	Response to hepatitis B vaccine	1,760 Korean ancestry non-responder adults, 5,107 Korean ancestry responder adults	2,327 Korean ancestry adults, 49 Korean ancestry non-responder infants, 234 Korean ancestry responder infants	6p21.32	HLA-DPB1	rs9277356-A	0.4716	7E-31	(Adults)	1.474164	[1.38-1.574]	Affymetrix [345072]	N
619	chr6_mann_hap4	4506466	4506467	rs7770370	32573827	Huang YH	2020-06-23	Aliment Pharmacol Ther	Large-scale genome-wide association study identifies HLA class II variants associated with chronic HBV infection: a study from Taiwan Biobank.	Chronic hepatitis B infection	1,810 East Asian cases, 9,002 East Asian seropositive controls	648 East Asian cases, 3,190 East Asian seropositive controls	6p21.32	NR	rs7770370-G	0.5739	3E-35		1.6393442	[1.52-1.79]	Affymetrix [583383]	N
619	chr6_mann_hap4	4506819	4506820	rs2856827	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip	15 Asian ancestry cases, 13 European ancestry cases, 15 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	6p21.32	NR	rs2856827-?	NR	4E-6		3.87	[2.88-5.2]	Illumina [539000] (imputed)	N
619	chr6_mann_hap4	4507208	4507209	rs9501251	28425483	Qiu F	2017-04-20	Nat Commun	A genome-wide association study identifies six novel risk loci for primary biliary cholangitis.	Primary biliary cholangitis	1,122 Han Chinese ancestry cases, 4,036 Han Chinese ancestry controls	907 Han Chinese ancestry cases, 2,127 Han Chinese ancestry controls	6p21.32	HLA-DPB1	rs9501251-G	0.044	2E-22		2.01	[1.76-2.32]	Illumina [776516]	N
619	chr6_mann_hap4	4507271	4507272	rs7772134	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.32		rs7772134-G	0.899	5E-45				Affymetrix [10369434] (imputed)	N
619	chr6_mann_hap4	4507824	4507825	rs9277378	27595289	Goyal RK	2016-09-05	Bone Marrow Transplant	Novel HLA-DP region susceptibility loci associated with severe acute GvHD.	Acute graft versus host disease in bone marrow transplantation (recipient effect)	291 European ancestry recipients with acute graft versus host disease, 288 European ancestry recipients without acute graft versus host disease	NA	6p21.32	HLA-DPB1	rs9277378-?		2E-9				Affymetrix [905761]	N
619	chr6_mann_hap4	4507824	4507825	rs9277378	27470079	Li Z	2016-07-25	Lancet Oncol	Genetic risk of extranodal natural killer T-cell lymphoma: a genome-wide association study.	Extranodal natural killer T-cell lymphoma (nasal type)	189 East Asian ancestry cases, 957 East Asian ancestry controls	514 East Asian ancestry cases, 5,822 East Asian ancestry controls	6p21.32	HLA-DPB1	rs9277378-A	0.29	4E-19		1.84	[1.61-2.11]	Illumina [477644] (imputed)	N
619	chr6_mann_hap4	4509442	4509442	rs142975055	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic hepatitis B infection	145 European ancestry cases, 351,740 European ancestry controls, 2,234 East Asian ancestry cases, 169,588 East Asian ancestry controls	NA	6p21.32		rs142975055-GAAATA	NR	1E-44		0.4385	[0.38-0.5] unit increase	Affymetrix, Illumina [20457334] (imputed)	N
619	chr6_mann_hap4	4510897	4510898	rs9277464	29534301	Nishida N	2018-03-13	Hepatology	Key HLA-DRB1-DQB1 haplotypes and role of the BTNL2 gene for response to a hepatitis B vaccine.	Response to hepatitis B vaccine	107 Japanese ancestry low responder individuals, 351 Japanese ancestry intermediate responder individuals, 735 Japanese ancestry high responder individuals	NA	6p21.32	HLA-DPB1	rs9277464-?		7E-11		0.175	unit decrease	Affymetrix [427664]	N
619	chr6_mann_hap4	4512406	4512407	rs9277535	27244555	Li Y	2016-05-31	Nat Commun	Genome-wide association study identifies 8p21.3 associated with persistent hepatitis B virus infection among Chinese.	Persistent hepatitis B virus infection	1,251 Chinese ancestry persistently infected cases, 1,057 Chinese ancestry spontaneously recovered controls	3,905 Chinese ancestry persistently infected cases, 3,356 Chinese ancestry spontaneously recovered controls	6p21.32	HLA-DPB1	rs9277535-A		4E-6		1.45	[1.23-1.69]	Affymetrix, Illumina [up to 4494311] (imputed)	N
619	chr6_mann_hap4	4512406	4512407	rs9277535	25802187	Jiang DK	2015-04-28	Hepatology	Genetic variants in five novel loci including CFB and CD40 predispose to chronic hepatitis B.	Chronic hepatitis B infection	2,514 Chinese ancestry cases, 1,130 Chinese ancestry controls	6,600 Chinese ancestry cases, 8,127 Chinese ancestry controls	6p21.32	HLA-DPB1	rs9277535-A	0.58	1E-70		1.52	[1.45-1.59]	Illumina [3680900] (imputed)	N
619	chr6_mann_hap4	4512406	4512407	rs9277535	24940741	Chang SW	2014-06-18	PLoS One	A genome-wide association study on chronic HBV infection and its clinical progression in male Han-Taiwanese.	Chronic hepatitis B infection	321 Chinese ancestry cases, 304 Chinese ancestry controls	1,302 Chinese ancestry cases, 761 Chinese ancestry controls	6p21.32	HLA-DPB1	rs9277535-G	0.251	5E-14		1.59	[1.41-1.79]	Illumina [456262]	N
619	chr6_mann_hap4	4512406	4512407	rs9277535	23760081	Kim YJ	2013-06-10	Hum Mol Genet	A genome-wide association study identified new variants associated with the risk of chronic hepatitis B.	Chronic hepatitis B infection	400 Korean ancestry cases, 1,000 Korean ancestry controls	971 Korean ancestry cases, 1,938 Korean ancestry controls	6p21.32	HLA-DP	rs9277535-?	NR	4E-40		1.89	[1.72-2.08]	Illumina [719265]	N
619	chr6_mann_hap4	4512406	4512407	rs9277535	22737229	Nishida N	2012-06-21	PLoS One	Genome-wide association study confirming association of HLA-DP with protection against chronic hepatitis B and viral clearance in Japanese and Korean.	Hepatitis B (viral clearance)	181 East Asian ancestry HBV carriers, 184 East Asian ancestry controls, 185 East Asian ancestry spontaneously HBV-resolved individuals	Up to 8,045 East Asian ancestry HBV carriers, up to 9,003 East Asian ancestry controls, up to 3,995 East Asian ancestry spontaneously HBV-resolved individuals	6p21.32	HLA-DPB1	rs9277535-G	0.57	2E-21	(Protective effects against CHB)	1.64	[1.47-1.82]	Affymetrix [597789]	N
619	chr6_mann_hap4	4512406	4512407	rs9277535	22737229	Nishida N	2012-06-21	PLoS One	Genome-wide association study confirming association of HLA-DP with protection against chronic hepatitis B and viral clearance in Japanese and Korean.	Hepatitis B (viral clearance)	181 East Asian ancestry HBV carriers, 184 East Asian ancestry controls, 185 East Asian ancestry spontaneously HBV-resolved individuals	Up to 8,045 East Asian ancestry HBV carriers, up to 9,003 East Asian ancestry controls, up to 3,995 East Asian ancestry spontaneously HBV-resolved individuals	6p21.32	HLA-DPB1	rs9277535-G	0.57	2E-17	(Clearance of HBV)	1.52	[1.37-1.67]	Affymetrix [597789]	N
619	chr6_mann_hap4	4512406	4512407	rs9277535	21764829	Png E	2011-07-15	Hum Mol Genet	A genome-wide association study of hepatitis B vaccine response in an Indonesian population reveals multiple independent risk variants in the HLA region.	Hepatitis B vaccine response	1,683 Indonesian ancestry individuals	1,931 Indonesian ancestry individuals	6p21.32	HLA-DPB1	rs9277535-?	NR	3E-12		1.39	[1.23-1.59]	Illumina [455508]	N
619	chr6_mann_hap4	4512406	4512407	rs9277535	21750111	Mbarek H	2011-07-12	Hum Mol Genet	A genome-wide association study of chronic hepatitis B identified novel risk locus in a Japanese population.	Hepatitis B	458 Japanese ancestry cases, 2,056 Japanese ancestry controls	2,209 Japanese ancestry cases, 4,440 Japanese ancestry controls	6p21.32	HLA-DPB1	rs9277535-G	0.57	3E-54		1.77	[1.65-1.91]	Illumina [423627]	N
619	chr6_mann_hap4	4512406	4512407	rs9277535	19349983	Kamatani Y	2009-04-06	Nat Genet	A genome-wide association study identifies variants in the HLA-DP locus associated with chronic hepatitis B in Asians.	Hepatitis B	179 Japanese ancestry cases, 934 Japanese ancestry controls	1,599 Japanese ancestry cases, 2,821 Japanese ancestry controls, 308 Thai ancestry cases, 546 Thai ancestry controls	6p21.32	HLA-DPB1	rs9277535-G		6E-39		1.75	[1.61-1.92]	Illumina [499544]	N
619	chr6_mann_hap4	4512643	4512644	rs9501255	28077804	Ben-Avraham D	2017-01-10	Aging (Albany NY)	The complex genetics of gait speed: genome-wide meta-analysis approach.	Gait speed in old age	31,478 European ancestry older adults	2,588 European ancestry older adults	6p21.32	HLA-DPB1	rs9501255-T	NR	3E-7		0.0244	[0.015-0.034] m/sec increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
619	chr6_mann_hap4	4512792	4512793	rs9277542	33736632	Zeng Z	2021-03-18	BMC Med Genomics	Genome-wide association study identifies new loci associated with risk of HBV infection and disease progression.	Persistent hepatitis B virus infection	587 Chinese ancestry persistent cases, 275 Chinese ancestry clearance controls	NA	6p21.32	HLA-DPB1	rs9277542-T	0.5347	2E-8		0.5353	NR	Affymetrix [607153]	N
619	chr6_mann_hap4	4512792	4512793	rs9277542	33736632	Zeng Z	2021-03-18	BMC Med Genomics	Genome-wide association study identifies new loci associated with risk of HBV infection and disease progression.	Hepatitis B	460 Chinese ancestry cases, 169 Chinese ancestry controls	NA	6p21.32	HLA-DPB1	rs9277542-?	NR	2E-9				Affymetrix [607153]	N
619	chr6_mann_hap4	4512964	4512965	rs9277549	29534301	Nishida N	2018-03-13	Hepatology	Key HLA-DRB1-DQB1 haplotypes and role of the BTNL2 gene for response to a hepatitis B vaccine.	Response to hepatitis B vaccine	107 Japanese ancestry low responder individuals, 351 Japanese ancestry intermediate responder individuals, 735 Japanese ancestry high responder individuals	NA	6p21.32	HLA-DPB2	rs9277549-?		6E-11		0.175	unit decrease	Affymetrix [427664]	N
619	chr6_mann_hap4	4513046	4513047	rs9277552	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Osteoarthritis of the hip or knee	39,427 European ancestry cases, 378,169 European ancestry controls	NA	6p21.32	NR	rs9277552-C	0.79	2E-10		1.06	[1.04-1.08]	Affymetrix, Illumina [up to 17000000] (imputed)	N
619	chr6_mann_hap4	4513046	4513047	rs9277552	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Knee osteoarthritis	24,955 European ancestry cases, 378,169 European ancestry controls	NA	6p21.32	NR	rs9277552-C	0.79	2E-8		1.07	[1.04-1.09]	Affymetrix, Illumina [up to 17000000] (imputed)	N
619	chr6_mann_hap4	4513083	4513084	rs9277554	28076899	Taylor KE	2017-01-11	Arthritis Rheumatol	Genome-Wide Association Analysis Reveals Genetic Heterogeneity of Sjogren's Syndrome According to Ancestry.	Sjogren's syndrome	460 Asian ancestry cases, 1125 Asian ancestry controls	NA	6p21.32	HLA-DPB1	rs9277554-?		3E-7		1.65	[1.37-2.00]	Illumina [302688]	N
619	chr6_mann_hap4	4513083	4513084	rs9277554	23740775	Xie G	2013-09-01	Arthritis Rheum	Association of granulomatosis with polyangiitis (Wegener's) with HLA-DPB1*04 and SEMA6A gene variants: evidence from genome-wide analysis.	Wegener's granulomatosis	459 European ancestry cases, 1,503 European ancestry controls	291 European ancestry cases, 317 European ancestry controls	6p21.32	HLA-DOA, HSD17B8, RING1, COL11A2, RXRB, HLA-DPB1*04, HLA-DPB1, HLA-DPB2	rs9277554-C	0.708	2E-50		4.17	[3.33-5.00]	Illumina [287802]	N
619	chr6_mann_hap4	4513150	4513151	rs9277555	24586183	Medici M	2014-02-27	PLoS Genet	Identification of novel genetic Loci associated with thyroid peroxidase antibodies and clinical thyroid disease.	Thyroid peroxidase antibody levels	12,353 European ancestry individuals	8,159 European ancestry individuals	6p21.32	NR	rs9277555-G		6E-7		0.0199	[0.010-0.030] unit increase	Affymetrix, Illumina [up to 3437411] (imputed)	N
619	chr6_mann_hap4	4513210	4513213	rs148969528	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p21.32	HLA-DPB1, HLA-DPA2	rs148969528-A	0.178395	3E-15		0.022868847	[0.017-0.029] unit increase	Affymetrix [93095623] (imputed)	N
619	chr6_mann_hap4	4513210	4513213	rs148969528	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	6p21.32	HLA-DPB1, HLA-DPA2	rs148969528-A	0.178377	1E-17		0.024778191	[0.019-0.03] unit increase	Affymetrix [93095623] (imputed)	N
619	chr6_mann_hap4	4513642	4513643	rs3128967	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6p21.32	NR	rs3128967-T	0.90959	2E-12		1.0504202	[1.04-1.06]	Affymetrix [15688218] (imputed)	N
619	chr6_mann_hap4	4514307	4514308	rs9277562	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic hepatitis B infection	2,234 East Asian ancestry cases, 169,588 East Asian ancestry controls	NA	6p21.32		rs9277562-T	0.575524651	5E-45		0.44033504	[0.38-0.5] unit increase	Illumina [13428705] (imputed)	N
619	chr6_mann_hap4	4516419	4516420	rs2179920	27501781	Shiraishi K	2016-08-09	Nat Commun	Association of variations in HLA class II and other loci with susceptibility to EGFR-mutated lung adenocarcinoma.	EGFR mutation-positive lung adenocarcinoma	663 Japanese ancestry cases, 4,367 Japanese ancestry controls	2,510 Japanese ancestry cases, 10,791 Japanese ancestry controls	6p21.32	HLA-DPB1	rs2179920-A	0.165	5E-17		1.36	[1.27-1.47]	Illumina [NR] (imputed)	N
619	chr6_mann_hap4	4517663	4517664	rs2281388	31050781	Zhao SX	2019-05-03	JAMA Netw Open	Assessment of Molecular Subtypes in Thyrotoxic Periodic Paralysis and Graves Disease Among Chinese Han Adults: A Population-Based Genome-Wide Association Study.	Thyrotoxic hypokalemic periodic paralysis and Graves disease	171 Han Chinese ancestry cases, 2,160 Han Chinese ancestry controls	362 Han Chinese ancestry cases, 1,089 Han Chinese ancestry controls	6p21.32	HLA-DPB1, COL11A2	rs2281388-?	0.33	2E-18		1.74	[1.54-1.98]	Illumina [2752055] (imputed)	N
619	chr6_mann_hap4	4517663	4517664	rs2281388	21841780	Chu X	2011-08-14	Nat Genet	A genome-wide association study identifies two new risk loci for Graves' disease.	Graves' disease	1,468 Chinese ancestry cases, 1,490 Chinese ancestry controls	3,994 Chinese ancestry cases, 3,510 Chinese ancestry controls	6p21.32	HLA, DPB1	rs2281388-T	0.32	2E-65		1.64	[1.55-1.74]	Illumina [486049]	N
619	chr6_mann_hap4	4518367	4518368	rs6928954	20639394	Kang TW	2010-07-16	Hum Mol Genet	Genome-wide association of serum bilirubin levels in Korean population.	Bilirubin levels	8,841 Korean ancestry individuals	1,096 Korean ancestry individuals	6p21.32	intergenic	rs6928954-?	0.023	1E-6		0.075	[NR] bilirubin level increase	Affymetrix [1227049] (imputed)	N
619	chr6_mann_hap4	4518415	4518416	rs2295119	32912934	Li M	2020-09-10	J Am Soc Nephrol	Genome-Wide Meta-Analysis Identifies Three Novel Susceptibility Loci and Reveals Ethnic Heterogeneity of Genetic Susceptibility for IgA Nephropathy.	IgA nephropathy	2,628 Chinese ancestry cases, 11,563 Chinese ancestry controls	6,879 Han Chinese ancestry cases, 9,019 Han Chinese ancestry controls, 1,039 Italian ancestry cases, 1,289 Italian ancestry controls	6p21.32	DPA1.DPB2	rs2295119-T	0.22960427086396265	3E-14	(East Asian)	1.3605813	[1.25664462393162-1.47311444258073]	NR [3611808] (imputed)	N
619	chr6_mann_hap4	4518415	4518416	rs2295119	29784950	Sawai H	2018-05-21	Sci Rep	Genome-wide association study identified new susceptible genetic variants in HLA class I region for hepatitis B virus-related hepatocellular carcinoma.	Hepatocellular carcinoma in hepatitis B infection	473 Japanese ancestry chronic hepatitis and hepatocellular carcinoma cases, 516 Japanese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma	153 Japanese ancestry chronic hepatitis and hepatocellular carcinoma cases, 614 Japanese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma, 94 Chinese ancestry chronic hepatitis and hepatocellular carcinoma cases, 187 Chinese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma, 185 Thai ancestry chronic hepatitis and hepatocellular carcinoma cases, 198 Thai ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma	6p21.32	HLA	rs2295119-?	NR	6E-7	(Japanese)	1.59	[1.32-1.89]	Affymetrix [447830]	N
619	chr6_mann_hap4	4518415	4518416	rs2295119	29784950	Sawai H	2018-05-21	Sci Rep	Genome-wide association study identified new susceptible genetic variants in HLA class I region for hepatitis B virus-related hepatocellular carcinoma.	Hepatocellular carcinoma in hepatitis B infection	473 Japanese ancestry chronic hepatitis and hepatocellular carcinoma cases, 516 Japanese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma	153 Japanese ancestry chronic hepatitis and hepatocellular carcinoma cases, 614 Japanese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma, 94 Chinese ancestry chronic hepatitis and hepatocellular carcinoma cases, 187 Chinese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma, 185 Thai ancestry chronic hepatitis and hepatocellular carcinoma cases, 198 Thai ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma	6p21.32	HLA	rs2295119-?	NR	5E-7		1.5873016	[1.32-1.89] Japanese	Affymetrix [447830]	N
619	chr6_mann_hap4	4518774	4518775	rs3130189	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.32		rs3130189-T	0.829	9E-13				Affymetrix [10369434] (imputed)	N
619	chr6_mann_hap4	4527112	4527113	rs3117245	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs3117245-C	NR	8E-9		1.174	[1.112-1.24]	Affymetrix [7846216] (imputed)	N
619	chr6_mann_hap4	4527438	4527439	rs3117242	22808956	Lyons PA	2012-07-19	N Engl J Med	Genetically distinct subsets within ANCA-associated vasculitis.	Antineutrophil cytoplasmic antibody-associated vasculitis	914 European ancestry cases, 5,259 European ancestry controls	1,454 European ancestry cases, 1,666 European ancestry controls	6p21.32	HLA-DP, COL11A2	rs3117242-?	NR	1E-71		3.67	[NR]	Affymetrix [NR]	N
619	chr6_mann_hap4	4528575	4528575	rs559242105	33143745	Andlauer TFM	2020-11-04	BMC Med	Treatment- and population-specific genetic risk factors for anti-drug antibodies against interferon-beta: a GWAS.	Neutralising antibody response to interferon beta therapy in multiple sclerosis (presence of antibodies; IFN?-1b subcutaneous)	up to 2,000 German and Swedish ancestry individuals	up to 757 German and Swedish ancestry individuals	6p21.32		rs559242105-TA	0.18	1E-8	(conditional on rs28366299)	0.85	[-0.56--1.14] unit decrease	Illumina [8550834] (imputed)	N
619	chr6_mann_hap4	4528575	4528575	rs559242105	33143745	Andlauer TFM	2020-11-04	BMC Med	Treatment- and population-specific genetic risk factors for anti-drug antibodies against interferon-beta: a GWAS.	Neutralising antibody response to interferon beta therapy in multiple sclerosis (antibody titre; IFN?-1b subcutaneous)	up to 2,000 German and Swedish ancestry individuals	up to 757 German and Swedish ancestry individuals	6p21.32		rs559242105-TA	0.18	5E-10	(conditional on rs9272775)	0.28	[-0.18--0.38] unit decrease	Illumina [8550834] (imputed)	N
619	chr6_mann_hap4	4528869	4528870	rs3128923	33736632	Zeng Z	2021-03-18	BMC Med Genomics	Genome-wide association study identifies new loci associated with risk of HBV infection and disease progression.	Hepatitis B	460 Chinese ancestry cases, 169 Chinese ancestry controls	NA	6p21.32	HLA-DPA2	rs3128923-?	NR	2E-6				Affymetrix [607153]	N
619	chr6_mann_hap4	4529719	4529720	rs4282438	24097066	Li Y	2013-10-06	Nat Genet	A genome-wide association study in Han Chinese identifies a susceptibility locus for primary Sjogren's syndrome at 7q11.23.	Sjogren's syndrome	542 Han Chinese ancestry cases, 1,050 Han Chinese ancestry controls	1,303 Han Chinese ancestry cases, 2,727 Han Chinese ancestry controls	6p21.32	COL11A2, HLA-DPB1, HLA-DPA1	rs4282438-G	0.3546	9E-25		1.58	[1.45-1.72]	Affymetrix [556134]	N
619	chr6_mann_hap4	4529719	4529720	rs4282438	23817570	Shi Y	2013-06-30	Nat Genet	A genome-wide association study identifies two new cervical cancer susceptibility loci at 4q12 and 17q12.	Cervical cancer	Up to 1,364 Han Chinese ancestry cases, up to 3,028 Han Chinese ancestry controls	4,167 Han Chinese ancestry cases, 7,196 Han Chinese ancestry controls	6p21.32	HLA-DPB2	rs4282438-?	0.56	5E-27	(Stringently Matched)	1.35	[1.27-1.41]	Affymetrix [563339]	N
619	chr6_mann_hap4	4529787	4529788	rs2064479	31044621	Rimpela JM	2019-05-02	Blood Press	Genome-wide association study of white-coat effect in hypertensive patients.	White coat effect (clinic diastolic blood pressure minus ambulatory diastolic blood pressure)	206 Finnish ancestry individuals	NA	6p21.32	HLA-DPB1	rs2064479-A	0.26	5E-6		2.4	[1.42-3.38] unit increase	Illumina [629414]	N
619	chr6_mann_hap4	4532990	4532991	rs910320	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.32	Intergenic	rs910320-?		8E-8		1.05	[1.03-1.07]	Illumina [7645193] (imputed)	N
619	chr6_mann_hap4	4533213	4533214	rs3128930	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p21.32	HLA-DPA1	rs3128930-C	0.683	7E-6		0.053	[0.029-0.077] unit increase	Affymetrix, Illumina [7374092] (imputed)	N
619	chr6_mann_hap4	4533637	4533638	rs872956	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.32	Intergenic	rs872956-?		8E-8		1.58	[1.34-1.86]	Illumina [7645193] (imputed)	N
619	chr6_mann_hap4	4533699	4533702	rs57746686	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cervical cancer	967 East Asian ancestry cases, 60,614 East Asian ancestry controls	NA	6p21.32		rs57746686-G	0.159023897	1E-9		0.38955024	[0.26-0.52] unit increase	Illumina [13381745] (imputed)	N
619	chr6_mann_hap4	4535710	4535711	rs3130218	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cervical cancer	6,563 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs3130218-A	NR	5E-9		1.16171	NR	Affymetrix [7846216] (imputed)	N
619	chr6_mann_hap4	4539813	4539814	rs9277630	34246321	Fukunaga K	2021-07-10	Am J Hum Genet	Genome-wide association study reveals an association between the HLA-DPB1<sup>*</sup>02:01:02 allele and wheat-dependent exercise-induced anaphylaxis.	Wheat-dependent exercise-induced anaphylaxis	77 Japanese ancestry cases, 924 Japanese ancestry controls	91 Japanese ancestry cases, 435 Japanese ancestry controls	6p21.32		rs9277630-A	0.26	1E-11		3.53	[2.45-5.09]	Illumina [3891096] (imputed)	N
619	chr6_mann_hap4	4539854	4539855	rs733208	24722205	Kwak SH	2014-04-17	Hum Mol Genet	A genome-wide association study on thyroid function and anti-thyroid peroxidase antibodies in Koreans.	Thyroid peroxidase antibody positivity	377 Korean ancestry cases, 3,019 Korean ancestry anti-TPO controls	108 Korean ancestry cases, 734 Korean ancestry controls	6p21.32	HLA-DPB2	rs733208-A	0.30	4E-7		1.435	[1.30-1.57]	Affymetrix [1418709] (imputed)	N
619	chr6_mann_hap4	4540058	4540059	rs9277636	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	6p21.32	NR	rs9277636-G	0.153	3E-8		0.0105227	[0.0068-0.0143] unit increase	NR [~ 9732723] (imputed)	N
619	chr6_mann_hap4	4543004	4543005	rs139394070	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	6p21.32		rs139394070-?	NR	5E-8				Affymetrix [NR] (imputed)	N
619	chr6_mann_hap4	4543833	4543834	rs3117035	20031603	Marroni F	2009-08-01	Circ Cardiovasc Genet	A genome-wide association scan of RR and QT interval duration in 3 European genetically isolated populations: the EUROSPAN project.	RR interval (heart rate)	2,325 European ancestry individuals	NA	6p21.32	intergenic	rs3117035-A	0.48	1E-6		0.14	[0.08-0.20] unit decrease	Illumina [~ 318327]	N
619	chr6_mann_hap4	4544032	4544033	rs1883414	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	6p21.32	HLA-DPB2, HLA-DPB1, HLA-DPA1	rs1883414-G	0.68	2E-11		1.22	[NR]	Illumina [> 1000000] (imputed)	N
619	chr6_mann_hap4	4544032	4544033	rs1883414	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	6p21.32	HLA-DPB1, HLA-DPA1, HLA-DPB2	rs1883414-G	0.68	5E-7	(EA)	1.2	[NR]	Illumina [> 1000000] (imputed)	N
619	chr6_mann_hap4	4544032	4544033	rs1883414	21399633	Gharavi AG	2011-03-13	Nat Genet	Genome-wide association study identifies susceptibility loci for IgA nephropathy.	Nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls	712 Han Chinese ancestry cases, 748 Han Chinese ancestry controls, 1,238 European ancestry cases, 1,172 European ancestry controls	6p21.32	HLA-DPA1, HLA-DPB1, HLA-DPB2	rs1883414-?	0.67 (EA)	5E-9		1.28	[NR]	Illumina [498322]	N
619	chr6_mann_hap4	4545679	4545680	rs115311892	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein COL11A2	5,366 Icelandic ancestry individuals	NA	6p21.32		rs115311892-T	0.01149	1E-16		0.748771	[0.57-0.93] unit increase	Illumina [7506463] (imputed)	N
619	chr6_mann_hap4	4547219	4547220	rs3117027	23482656	Chen D	2013-03-12	J Natl Cancer Inst	Genome-wide association study of susceptibility loci for cervical cancer.	Cervical cancer	1,034 European ancestry cases, 3,948 European ancestry controls	1,140 European ancestry cases, 1,058 European ancestry controls	6p21.32	HLA-DPB2	rs3117027-?	NR	1E-7		1.25	[1.15-1.36]	Illumina [632668]	N
619	chr6_mann_hap4	4553969	4553970	rs117232140	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	6p21.32	HLA-DPB2	rs117232140-?	NR	7E-9		0.096564196	[0.064-0.129] unit decrease	Illumina [27896057] (imputed)	N
619	chr6_mann_hap4	4553970	4553971	rs3117006	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma and attention deficit hyperactivity disorder	46,802 European ancestry asthma cases, 19,099 European ancestry attention deficit hyperactivity disorder cases, 381,675 European ancestry controls	NA	6p21.32	HLA-DPB2	rs3117006-?	NR	3E-8				Affymetrix [up to 8274727] (imputed)	N
619	chr6_mann_hap4	4553970	4553971	rs3117006	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma (childhood onset)	9,676 European ancestry cases, 347,481 European ancestry controls	NA	6p21.32	HLA-DPB2	rs3117006-?	NR	2E-6		0.0766984	[0.044-0.109] unit increase	Affymetrix [8274727] (imputed)	N
619	chr6_mann_hap4	4554684	4554685	rs3129270	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs3129270-T	NR	1E-7		1.1494253	[1.09-1.21]	Affymetrix [7846216] (imputed)	N
619	chr6_mann_hap4	4554875	4554876	rs3129269	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	6p21.32	HLA-DPB2, HLA-DPB1, HLA-DPA1	rs3129269-C	NR	5E-7	(East Asian)	1.29	[NR]	Illumina [> 1000000] (imputed)	N
619	chr6_mann_hap4	4555312	4555313	rs3116995	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.32	NR	rs3116995-?	NR	6E-9				Affymetrix [~ 8270000] (imputed)	N
619	chr6_mann_hap4	4555605	4555606	rs6901830	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	6p21.32	HCG24	rs6901830-G	0.847121	1E-19		1.0788485	[1.0613158162383-1.09667081279089]	NR [9572556] (imputed)	N
619	chr6_mann_hap4	4555830	4555831	rs9277768	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hashimoto thyroiditis	537 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	6p21.32		rs9277768-T	0.335380575	4E-10		0.4089919	[0.28-0.54] unit increase	Illumina [13428945] (imputed)	N
619	chr6_mann_hap4	4555857	4555858	rs9277769	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.32		rs9277769-C	0.368	4E-12				Affymetrix [10369434] (imputed)	N
619	chr6_mann_hap4	4556058	4556059	rs3116994	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.32		rs3116994-G	0.461	2E-9				Affymetrix [10369434] (imputed)	N
619	chr6_mann_hap4	4556058	4556059	rs3116994	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs3116994-A	0.548	6E-12	(Collagen alpha-2(XI) chain, COL11A2.11278.4.3)	0.17	[0.13-0.21] unit increase	Affymetrix [10572788] (imputed)	N
619	chr6_mann_hap4	4556799	4556800	rs3116989	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma onset (childhood vs adult)	13,962 European ancestry childhood onset cases, 14,873 European ancestry adult onset cases	31,002 European ancestry childhood onset cases, 16,297 European ancestry adult onset cases	6p21.32	COL11A2, HLA-DPB2	rs3116989-G	0.867	4E-6		1.073	[1.04-1.1]	Affymetrix [9000000] (imputed)	N
619	chr6_mann_hap4	4556799	4556800	rs3116989	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	6p21.32	HLA-DPB2, COL11A2	rs3116989-?	NR	3E-17		1.096	[1.07-1.12]	Affymetrix [9000000] (imputed)	N
619	chr6_mann_hap4	4556799	4556800	rs3116989	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	6p21.32	HLA-DPB2, COL11A2	rs3116989-G	NR	4E-14		1.078	[1.06-1.1]	Affymetrix [9000000] (imputed)	N
619	chr6_mann_hap4	4561444	4561445	rs9366816	24940741	Chang SW	2014-06-18	PLoS One	A genome-wide association study on chronic HBV infection and its clinical progression in male Han-Taiwanese.	Chronic hepatitis B infection	321 Chinese ancestry cases, 304 Chinese ancestry controls	1,302 Chinese ancestry cases, 761 Chinese ancestry controls		HLA-DPA3	rs9366816-C	0.414	3E-10		1.43	[1.28-1.60]	Illumina [456262]	N
619	chr6_mann_hap4	4561941	4561942	rs9277841	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6p21.32	HLA-DPA3	rs9277841-A	0.43233	1E-12		0.015864564	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
619	chr6_mann_hap4	4582243	4582244	rs9277914	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	COL11A2	rs9277914-A	NR	8E-9		0.0222494	[0.015-0.03] unit increase	Affymetrix [321016] (imputed)	N
619	chr6_mann_hap4	4582286	4582287	rs3130160	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.32	NR	rs3130160-?	NR	9E-11				Affymetrix [~ 8270000] (imputed)	N
619	chr6_mann_hap4	4583173	4583174	rs3129205	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	COL11A2	rs3129205-T	0.348	3E-25	(Collagen alpha-2(XI) chain, COL11A2.11278.4.3)	0.27	[0.21-0.33] unit increase	Affymetrix [10572788] (imputed)	N
620	chr6_mann_hap4	4589545	4589546	rs2229790	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	6p21.32	COL11A2	rs2229790-?	NR	3E-13		0.313	[0.23-0.4] unit decrease	Illumina [34656550] (imputed)	N
620	chr6_mann_hap4	4593376	4593377	rs73741509	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.32		rs73741509-C	0.971	2E-14				Affymetrix [10369434] (imputed)	N
620	chr6_mann_hap4	4593953	4593954	rs2855446	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6p21.32	Intergenic	rs2855446-A	0.6847	4E-9	(MTAG)	0.0083	[0.0056-0.011] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
620	chr6_mann_hap4	4595814	4595815	rs2855440	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein COL11A2	5,366 Icelandic ancestry individuals	NA	6p21.32		rs2855440-T	0.3577	4E-31		0.229242	[0.19-0.27] unit decrease	Illumina [7506463] (imputed)	N
620	chr6_mann_hap4	4596950	4596951	rs73741526	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.32		rs73741526-A	0.971	3E-13				Affymetrix [10369434] (imputed)	N
620	chr6_mann_hap4	4598993	4598994	rs147927477	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Height	458,235 European ancestry individuals	NA	6p21.32		rs147927477-?	NR	9E-12		0.215425	[0.15-0.28] unit decrease	NR [9800000] (imputed)	N
620	chr6_mann_hap4	4601263	4601264	rs2254287	18193043	Willer CJ	2008-01-13	Nat Genet	Newly identified loci that influence lipid concentrations and risk of coronary artery disease.	LDL cholesterol	8,589 European ancestry individuals	12,981 European ancestry individuals	6p21.32	B3GALT4	rs2254287-G	0.38	5E-8		1.91	[NR] mg/dl increase	Affymetrix, Illumina [~ 2261000] (imputed)	N
620	chr6_mann_hap4	4601558	4601559	rs1799908	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	COL11A2	rs1799908-A	NR	5E-10		0.0178819	[0.012-0.024] unit decrease	Affymetrix [321016] (imputed)	N
620	chr6_mann_hap4	4609194	4609195	rs41317102	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	6p21.32	COL11A2	rs41317102-C	NR	2E-7		0.247907	[0.15-0.34] unit increase	Illumina [at least 950000] (imputed)	N
620	chr6_mann_hap4	4610842	4610843	rs9277934	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	COL11A2	rs9277934-T	NR	2E-10		0.0194123	[0.013-0.025] unit increase	Affymetrix [321016] (imputed)	N
620	chr6_mann_hap4	4617531	4617532	rs144092339	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein COL11A2	5,366 Icelandic ancestry individuals	NA	6p21.32		rs144092339-T	0.02245	3E-20		0.580629	[0.46-0.7] unit increase	Illumina [7506463] (imputed)	N
620	chr6_mann_hap4	4617531	4617532	rs144092339	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs144092339-T	0.037	1E-22	(Collagen alpha-2(XI) chain, COL11A2.11278.4.3)	0.63	[0.51-0.75] unit increase	Affymetrix [10572788] (imputed)	N
620	chr6_mann_hap4	4618975	4618976	rs1050673	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.32	NR	rs1050673-G	0.64734375	4E-21	(COL11A2, 11278_4_3)	0.24454433	[0.19-0.29] unit increase	Illumina [> 1000000] (imputed)	N
620	chr6_mann_hap4	4618975	4618976	rs1050673	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.32	NR	rs1050673-G	0.64734375	3E-9	(MICA, 2730_58_2)	0.15462574	[0.1-0.21] unit increase	Illumina [> 1000000] (imputed)	N
620	chr6_mann_hap4	4626707	4626708	rs35690712	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs35690712-C	0.03	6E-22	(Collagen alpha-2(XI) chain, COL11A2.11278.4.3)	0.69	[0.55-0.83] unit increase	Affymetrix [10572788] (imputed)	N
620	chr6_mann_hap4	4632102	4632103	rs421446	27244555	Li Y	2016-05-31	Nat Commun	Genome-wide association study identifies 8p21.3 associated with persistent hepatitis B virus infection among Chinese.	Persistent hepatitis B virus infection	1,251 Chinese ancestry persistently infected cases, 1,057 Chinese ancestry spontaneously recovered controls	3,905 Chinese ancestry persistently infected cases, 3,356 Chinese ancestry spontaneously recovered controls	6p21.32	MIR219A1	rs421446-G		3E-6		1.47	[1.25-1.72]	Affymetrix, Illumina [up to 4494311] (imputed)	N
620	chr6_mann_hap4	4649740	4649741	rs146306986	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.32	TAPBP	rs146306986-C	0.99	3E-96	(TAPBP, 12378_71_3)	2.5151718	[2.29-2.74] unit decrease	Illumina [> 1000000] (imputed)	N
620	chr6_mann_hap4	4650242	4650243	rs1705001	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	6p21.32	intergenic	rs1705001-A	0.2413	4E-11		0.0133	[0.0094-0.0172] unit increase	Affymetrix [18391927] (imputed)	N
620	chr6_mann_hap4	4651802	4651803	rs411919	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	6p21.32	RING1	rs411919-G	0.73	8E-14				NR [> 9500000] (imputed)	N
620	chr6_mann_hap4	4654940	4654941	rs77206300	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PDIA3	5,363 Icelandic ancestry individuals	NA	6p21.32		rs77206300-A	0.01105	6E-12		0.630021	[0.45-0.81] unit increase	Illumina [7506463] (imputed)	N
620	chr6_mann_hap4	4661601	4661602	rs9277952	23817570	Shi Y	2013-06-30	Nat Genet	A genome-wide association study identifies two new cervical cancer susceptibility loci at 4q12 and 17q12.	Cervical cancer	Up to 1,364 Han Chinese ancestry cases, up to 3,028 Han Chinese ancestry controls	4,167 Han Chinese ancestry cases, 7,196 Han Chinese ancestry controls	6p21.32	intergenic	rs9277952-?	0.53	2E-9	(Matched)	1.18	[1.12-1.23]	Affymetrix [563339]	N
585	chr6_mcf_hap5	168	169	rs150814685	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma and major depressive disorder	46,802 European ancestry asthma cases, 59,851 European ancestry major depressive disorder cases, 460,635 European ancestry controls	NA	6p22.1	C6orf100, GPX5, GPX6, HCG14, LOC401242, NKAPL, OR2B3, OR2J2, OR2J3, OR2W1, TRIM27, ZBED9, ZKSCAN3, ZKSCAN4, ZNF311, ZSCAN12, ZSCAN23, ZSCAN26, ZSCAN31, LOC100129636, PGBD1	rs150814685-?	NR	2E-11				Affymetrix [up to 13554551] (imputed)	N
585	chr6_mcf_hap5	1363	1364	rs16894234	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6p22.1	NR	rs16894234-?	NR	3E-12				Affymetrix [~ 8270000] (imputed)	N
585	chr6_mcf_hap5	15647	15648	rs1233578	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	RPSAP2	rs1233578-G	NR	2E-8		0.0228089	[0.015-0.031] unit decrease	Affymetrix [323858] (imputed)	N
585	chr6_mcf_hap5	15647	15648	rs1233578	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p22.1	NR	rs1233578-G	0.18	4E-9		1.13	[1.08-1.18]	Affymetrix [9886854] (imputed)	N
585	chr6_mcf_hap5	15647	15648	rs1233578	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p22.1	NR	rs1233578-G	0.18	4E-14			[NR]	Affymetrix [9886854] (imputed)	N
585	chr6_mcf_hap5	15647	15648	rs1233578	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p22.1	NR	rs1233578-G	0.18	2E-11		1.11	[1.08-1.14]	Affymetrix [9886854] (imputed)	N
585	chr6_mcf_hap5	15647	15648	rs1233578	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p22.1	NR	rs1233578-G	0.18	8E-14			[NR]	Affymetrix [9886854] (imputed)	N
585	chr6_mcf_hap5	15647	15648	rs1233578	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in non-current smokers	16,488 European ancestry cases, 169,688 European ancestry controls	NA	6p22.1	NR	rs1233578-G	0.18	2E-11		1.11	[1.08-1.14]	Affymetrix [9886854] (imputed)	N
585	chr6_mcf_hap5	15647	15648	rs1233578	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in never smokers	8,631 European ancestry cases, 120,544 European ancestry controls	NA	6p22.1	NR	rs1233578-G	0.18	3E-9		1.13	[1.09-1.18]	Affymetrix [9886854] (imputed)	N
585	chr6_mcf_hap5	15647	15648	rs1233578	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in ever smokers	12,446 European ancestry cases, 59,145 European ancestry controls	NA	6p22.1	NR	rs1233578-G	0.18	3E-7		1.1	[1.06-1.15]	Affymetrix [9886854] (imputed)	N
585	chr6_mcf_hap5	15647	15648	rs1233578	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	6p22.1	TRIM27	rs1233578-G	0.18	2E-17				NR [> 9500000] (imputed)	N
585	chr6_mcf_hap5	15647	15648	rs1233578	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	6p22.1	TRIM27	rs1233578-G	0.17936300000000005	4E-12		1.0560242	[1.03991341766738-1.07238465256811]	NR [9572556] (imputed)	N
585	chr6_mcf_hap5	15647	15648	rs1233578	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	6p22.1	NR	rs1233578-A	NR	1E-9		6.098	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
585	chr6_mcf_hap5	15647	15648	rs1233578	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	RPSAP2	rs1233578-A	NR	5E-12		6.899	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
585	chr6_mcf_hap5	15647	15648	rs1233578	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls, 2,149 African ancestry cases, 6,055 African ancestry controls, 1,239 Japanese ancestry cases, 3,976 Japanese ancestry controls, 606 Latino cases, 792 Latino controls	NA	6p22.1	GPX5, TRIM27	rs1233578-G	0.13	6E-7		1.09	[1.05-1.12]	Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
585	chr6_mcf_hap5	15647	15648	rs1233578	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls	NA	6p22.1	GPX5, TRIM27	rs1233578-G	0.13	5E-9		0.1	[0.061-0.139] unit increase	Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
585	chr6_mcf_hap5	17351	17353	rs372002372	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs372002372-?		2E-10	(Posterior corona radiata )			NR [8955960] (imputed)	N
585	chr6_mcf_hap5	17351	17353	rs372002372	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs372002372-?		1E-11	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
585	chr6_mcf_hap5	17351	17353	rs372002372	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs372002372-?		1E-11	(Superior corona radiata)			NR [8955960] (imputed)	N
585	chr6_mcf_hap5	17351	17353	rs372002372	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs372002372-?		5E-8	(Average across all tracts)			NR [8955960] (imputed)	N
585	chr6_mcf_hap5	17351	17353	rs372002372	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs372002372-?		2E-11	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
585	chr6_mcf_hap5	17351	17353	rs372002372	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs372002372-?		2E-10	(Posterior corona radiata )			NR [8955960] (imputed)	N
585	chr6_mcf_hap5	18161	18162	rs7763390	33740410	Warrier V	2021-03-16	Lancet Psychiatry	Gene-environment correlations and causal effects of childhood maltreatment on physical and mental health: a genetically informed approach.	Childhood maltreatment	185,414 European ancestry individuals	NA	6p22.1	NR	rs7763390-A	0.84	7E-9		0.027	[0.017-0.037] unit decrease	Affymetrix, Illumina [at least 500527] (imputed)	N
585	chr6_mcf_hap5	23155	23156	rs1233587	32358547	Persyn E	2020-05-01	Nat Commun	Genome-wide association study of MRI markers of cerebral small vessel disease in 42,310 participants.	White matter integrity (mean diffusivity)	17,467 European ancestry individuals	NA	6p22.1	ZFP57	rs1233587-T	0.295257	6E-12		0.325855	[0.23-0.42] unit decrease	Affymetrix [NR] (imputed)	N
585	chr6_mcf_hap5	23155	23156	rs1233587	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs1233587-?		2E-8	(Anterior corona radiata)			NR [8955960] (imputed)	N
585	chr6_mcf_hap5	24934	24935	rs1742741	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs1742741-?		4E-9	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
585	chr6_mcf_hap5	24934	24935	rs1742741	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs1742741-?		8E-9	(Retrolenticular part of internal capsule)			NR [8955960] (imputed)	N
585	chr6_mcf_hap5	24934	24935	rs1742741	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	6p22.1	NR	rs1742741-?		2E-8	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
585	chr6_mcf_hap5	24934	24935	rs1742741	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	6p22.1	NR	rs1742741-?		2E-8	(Average across all tracts)			NR [8955960] (imputed)	N
585	chr6_mcf_hap5	27088	27089	rs568609045	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium HDL	115,082 European ancestry individuals	NA	6p22.1		rs568609045-G	0.908816	1E-8		0.0550229	[0.036-0.074] unit increase	NR [11722792] (imputed)	N
585	chr6_mcf_hap5	27088	27089	rs568609045	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large HDL	115,082 European ancestry individuals	NA	6p22.1		rs568609045-G	0.908816	4E-9		0.0550531	[0.037-0.073] unit increase	NR [11722792] (imputed)	N
585	chr6_mcf_hap5	27088	27089	rs568609045	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in HDL	115,082 European ancestry individuals	NA	6p22.1		rs568609045-G	0.908816	4E-8		0.052683	[0.034-0.071] unit increase	NR [11722792] (imputed)	N
585	chr6_mcf_hap5	28400	28400	rs71548373	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	6p22.1	intergenic	rs71548373-?	NR	6E-13		0.0283	[0.021-0.035] unit decrease	Affymetrix [5701386] (imputed)	N
585	chr6_mcf_hap5	30993	30994	rs1233595	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs1233595-?		2E-9	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
585	chr6_mcf_hap5	30993	30994	rs1233595	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs1233595-?		1E-9	(Average across all tracts)			NR [8955960] (imputed)	N
585	chr6_mcf_hap5	30993	30994	rs1233595	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs1233595-?		4E-9	(Average across all tracts)			NR [8955960] (imputed)	N
585	chr6_mcf_hap5	30993	30994	rs1233595	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs1233595-?		3E-9	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
585	chr6_mcf_hap5	38076	38077	rs1233604	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p22.1	AL662890.1	rs1233604-A	NR	4E-8		0.0237945	[0.015-0.032] unit decrease	Affymetrix [319769] (imputed)	N
585	chr6_mcf_hap5	40373	40374	rs9257158	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p22.1	AL662890.1	rs9257158-G	NR	1E-8		0.0194989	[0.013-0.026] unit decrease	Affymetrix [323123] (imputed)	N
585	chr6_mcf_hap5	68374	68375	rs9257190	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p22.1	AL662890.3	rs9257190-G	NR	2E-10		0.0253484	[0.018-0.033] unit decrease	Affymetrix [323858] (imputed)	N
585	chr6_mcf_hap5	69760	69760	rs202065757	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p22.1	NR	rs202065757-?	NR	3E-6		0.1767	[0.1-0.25] unit increase	Illumina [at least 560000] (imputed)	N
585	chr6_mcf_hap5	71527	71528	rs141456208	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs141456208-?		4E-6		1.75	[1.38-2.23]	Illumina [7645193] (imputed)	N
585	chr6_mcf_hap5	74083	74084	rs7739915	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p22.1		rs7739915-G	0.829881	3E-8		0.0298334	[0.019-0.04] unit decrease	NR [11722792] (imputed)	N
585	chr6_mcf_hap5	74598	74599	rs2013652	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p22.1		rs2013652-T	0.605	3E-27				Affymetrix [10369434] (imputed)	N
585	chr6_mcf_hap5	79517	79518	rs4324798	19836008	Landi MT	2009-10-15	Am J Hum Genet	A genome-wide association study of lung cancer identifies a region of chromosome 5p15 associated with risk for adenocarcinoma.	Lung adenocarcinoma	5,739 European ancestry cases, 5,848 European ancestry controls	7,561 European ancestry cases, 13,818 European ancestry controls	6p22.1	TRNAA-UGC	rs4324798-A	0.09	2E-8		1.16	[1.09-1.24]	Illumina [515922]	N
585	chr6_mcf_hap5	82319	82319	rs142204688	32227112	Lee MA	2020-03-30	Hum Mol Genet	Common variation at 16p11.2 is associated with glycosuria in pregnancy: Findings from a genome-wide association study in European women.	Glycosuria in pregnancy (offspring genotype effect)	747 European ancestry cases, 2,991 European ancestry controls	NA	6p22.1	NR	rs142204688-ATTT	0.024554775	2E-9		3.1145043	[2.74466796-3.4843406]	Illumina [9873828] (imputed)	N
585	chr6_mcf_hap5	90593	90594	rs9257226	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6p22.1	XXbac-BPG308K3.5	rs9257226-G	NR	2E-9		0.0237897	[0.016-0.032] unit decrease	Affymetrix [321114] (imputed)	N
585	chr6_mcf_hap5	95075	95076	rs67662386	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	6p22.1	NR	rs67662386-?	NR	5E-7		0.135361	[0.082-0.188] unit increase	NR [13958389] (imputed)	N
585	chr6_mcf_hap5	95472	95473	rs187766969	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p22.1	NR	rs187766969-?	NR	3E-10		0.1907	[0.13-0.25] unit decrease	Illumina [at least 560000] (imputed)	N
585	chr6_mcf_hap5	95877	95878	rs209181	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	XXbac-BPG308K3.5	rs209181-A	NR	3E-15		0.032556	[0.024-0.041] unit decrease	Affymetrix [323858] (imputed)	N
585	chr6_mcf_hap5	95877	95878	rs209181	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	XXbac-BPG308K3.5	rs209181-A	NR	4E-15		0.0325128	[0.024-0.041] unit decrease	Affymetrix [127266] (imputed)	N
585	chr6_mcf_hap5	97304	97305	rs3118359	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	6p22.1	intergenic	rs3118359-T	0.0838	3E-13		0.0378	[0.028-0.048] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
585	chr6_mcf_hap5	99260	99261	rs3135296	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Neuroticism	274,107 British ancestry individuals	NA	6p22.1	NR	rs3135296-?	NR	6E-6		1.0090817	[1.01-1.01]	NR [8968716] (imputed)	N
585	chr6_mcf_hap5	99260	99261	rs3135296	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Major depressive disorder (lifetime)	16,301 British ancestry cases, 50,870 British ancestry controls	NA	6p22.1	NR	rs3135296-?	NR	5E-7		1.1049724	[1.06-1.15]	NR [5276842] (imputed)	N
585	chr6_mcf_hap5	99260	99261	rs3135296	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Help-seeking from a GP (without major depressive disorder symptoms)	8,632 British ancestry cases, 49,493 British ancestry controls	NA	6p22.1	NR	rs3135296-?	NR	1E-6		1.1350738	[1.08-1.19]	NR [5276842] (imputed)	N
585	chr6_mcf_hap5	99260	99261	rs3135296	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Help-seeking from a GP	113,262 British ancestry cases, 219,360 British ancestry controls	NA	6p22.1	NR	rs3135296-A	0.88	4E-12		1.0570824	[1.04-1.07]	NR [5276842] (imputed)	N
585	chr6_mcf_hap5	99475	99476	rs3131337	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	6p22.1	TRIM27	rs3131337-G	0.871891	1E-14		0.0229188	[0.017-0.029] unit increase	Affymetrix [NR] (imputed)	N
585	chr6_mcf_hap5	99475	99476	rs3131337	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	6p22.1	NR	rs3131337-?	NR	7E-6		0.0811	[0.046-0.116] unit decrease	Illumina [at least 560000] (imputed)	N
585	chr6_mcf_hap5	99864	99865	rs3132379	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	XXbac-BPG308K3.5	rs3132379-T	NR	1E-8		0.0232897	[0.015-0.031] unit decrease	Affymetrix [323858] (imputed)	N
585	chr6_mcf_hap5	99864	99865	rs3132379	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	XXbac-BPG308K3.5	rs3132379-T	NR	2E-8		0.0229592	[0.015-0.031] unit decrease	Affymetrix [127266] (imputed)	N
585	chr6_mcf_hap5	103414	103415	rs9278091	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA	6p22.1	NR	rs9278091-?	NR	6E-7		0.0586	[0.036-0.082] unit increase	Illumina [at least 560000] (imputed)	N
585	chr6_mcf_hap5	103685	103686	rs150548387	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Daytime sleep phenotypes	874 European ancestry individuals	NA	6p22.1	RPL13P, ZNF90P2, HCG14, TRIM27	rs150548387-G	NR	7E-7	(daytime resting)	2.54	[1.54-3.54] unit decrease	Affymetrix [7141204] (imputed)	N
585	chr6_mcf_hap5	106697	106698	rs9257248	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p22.1	NR	rs9257248-T	0.114	4E-11		0.0123	[0.0086-0.016] unit decrease	NR [7666894] (imputed)	N
585	chr6_mcf_hap5	106697	106698	rs9257248	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p22.1	LOC442181, LOC401242	rs9257248-A	0.217	7E-20				Illumina [118177]	N
585	chr6_mcf_hap5	120124	120125	rs561122079	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	6p22.1	XXbac-BPG308K3.5	rs561122079-T	0.0012	5E-6		1.4759	[0.84-2.11] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
585	chr6_mcf_hap5	124498	124499	rs9257270	32592749	Butler-Laporte G	2020-06-24	Clin Microbiol Infect	Elevated body-mass index is associated with an increased risk of infectious disease admissions and mortality: a mendelian randomization study.	Sepsis (hospital admission)	4,403 European ancestry cases, 17,612 European ancestry controls	NA	6p22.1	ZFP57	rs9257270-A	0.8	2E-8		0.018	[0.012-0.024] unit increase	NR [NR]	N
586	chr6_mcf_hap5	134245	134254	rs71554969	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p22.1	XXbac-BPG308K3.6	rs71554969-C	NR	8E-12		0.0218335	[0.016-0.028] unit decrease	Affymetrix [323123] (imputed)	N
586	chr6_mcf_hap5	135012	135013	rs3131336	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	6p22.1	TRIM27	rs3131336-C	0.882895	2E-18		0.019064	[0.015-0.023] unit decrease	Affymetrix [12370749]	N
586	chr6_mcf_hap5	143304	143305	rs3118365	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	6p22.1	LINC01623	rs3118365-A	0.0924	6E-12		0.0459	[0.033-0.059] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
586	chr6_mcf_hap5	143335	143336	rs4484511	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6p22.1	NR	rs4484511-?	NR	7E-14				Affymetrix [~ 8270000] (imputed)	N
586	chr6_mcf_hap5	143806	143807	rs113317416	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	XXbac-BPG308K3.6	rs113317416-T	NR	5E-10		0.0278345	[0.019-0.037] unit decrease	Affymetrix [321016] (imputed)	N
586	chr6_mcf_hap5	151752	151753	rs146347028	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Fibroblast growth factor basic levels	7,565 Finnish ancestry individuals	NA	6p22.1	NR	rs146347028-C		3E-6		0.2123	[0.12-0.3] SD units decrease	NR [10700000] (imputed)	N
586	chr6_mcf_hap5	157626	157627	rs7755875	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	6p22.1	TRIM27	rs7755875-A	0.3193	3E-11		0.002	[0.0014-0.0026] unit increase	Affymetrix [15275733] (imputed)	N
586	chr6_mcf_hap5	169180	169180	rs71548400	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6p22.1	HCG14	rs71548400-ATT	NR	4E-9		0.0184951	[0.012-0.025] unit decrease	Affymetrix [321114] (imputed)	N
586	chr6_mcf_hap5	169772	169776	rs150164120	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs150164120-?		4E-10	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
586	chr6_mcf_hap5	169772	169776	rs150164120	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs150164120-?		2E-10	(Average across all tracts)			NR [8955960] (imputed)	N
586	chr6_mcf_hap5	169772	169776	rs150164120	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs150164120-?		1E-9	(Sagittal stratum)			NR [8955960] (imputed)	N
586	chr6_mcf_hap5	169931	169931	rs147662640	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs147662640-?		4E-8	(Average across all tracts)			NR [8955960] (imputed)	N
586	chr6_mcf_hap5	169931	169931	rs147662640	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs147662640-?		2E-8	(Cingulate gyrus)			NR [8955960] (imputed)	N
586	chr6_mcf_hap5	172056	172057	rs3132374	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in diabetes	70,762 European ancestry individuals, 20,967 African American individuals	NA	6p22.1	TRIM27	rs3132374-C	0.916	3E-9		0.959	[0.64-1.27] unit increase	Affymetrix [NR] (imputed)	N
586	chr6_mcf_hap5	176008	176009	rs209126	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p22.1	TRIM27	rs209126-T		6E-27		0.023	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
586	chr6_mcf_hap5	187712	187713	rs3131099	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Liver iron content	32,858 European ancestry individuals	NA	6p22.1	TRIM27	rs3131099-?	NR	9E-18	(conditional)	0.0654	NR mg/g decrease	Affymetrix [9390170] (imputed)	N
586	chr6_mcf_hap5	192977	192978	rs144996521	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	6p22.1	TRIM27	rs144996521-G	0.999717	5E-10		0.148497	[0.1-0.2] unit increase	NR [13737936] (imputed)	N
586	chr6_mcf_hap5	197094	197095	rs3131103	31219150	Ekenberg C	2019-06-13	J Infect Dis	Single nucleotide polymorphisms in HLA alleles are associated with HIV-1 viral load in demographically diverse, ART-naive participants from the START trial.	Pre-treatment viral load in HIV-1 infection	1,398 European ancestry individuals, 572 Black individuals, 418 Hispanic individuals, 13 Asian ancestry individuals, 39 individuals	NA	6p22.1	TRIM27	rs3131103-G	0.07	9E-16		0.37	[0.28-0.46] unit decrease	Affymetrix [339439]	N
586	chr6_mcf_hap5	198359	198360	rs28400872	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	6p22.1		rs28400872-C	0.340661	5E-11		0.0196364	[0.014-0.025] unit decrease	Illumina [13479924] (imputed)	N
586	chr6_mcf_hap5	200337	200338	rs9468445	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p22.1	NR	rs9468445-?	NR	4E-9		0.1617	[0.11-0.21] unit increase	Illumina [at least 560000] (imputed)	N
586	chr6_mcf_hap5	200476	200477	rs2015436	26087016	Pappa I	2015-06-18	Am J Med Genet B Neuropsychiatr Genet	A genome-wide approach to children's aggressive behavior: The EAGLE consortium.	Childhood and early adolescence aggressive behavior	18,988 European ancestry individuals	NA	6p22.1	TRIM27	rs2015436-T	0.73	2E-6				Affymetrix, Illumina [up to 3856236] (imputed)	N
586	chr6_mcf_hap5	201194	201195	rs1233508	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	6p22.1	TRIM27	rs1233508-T	0.463	2E-16		0.0098	[0.0074-0.0122] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
586	chr6_mcf_hap5	201418	201421	rs200822404	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	6p22.1	NR	rs200822404-?	NR	4E-6		0.1076	[0.062-0.153] unit decrease	Illumina [at least 560000] (imputed)	N
586	chr6_mcf_hap5	208270	208271	rs144965899	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6p22.1	Intergenic	rs144965899-C	0.0463	8E-11	(MTAG)	0.0206	[0.014-0.027] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
586	chr6_mcf_hap5	209351	209352	rs3130895	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p22.1	TRIM27, C6orf100	rs3130895-A	0.218	4E-19				Illumina [118177]	N
586	chr6_mcf_hap5	215961	215962	rs140736187	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p22.1	NR	rs140736187-?	NR	2E-7		0.2249	[0.14-0.31] unit increase	Illumina [at least 560000] (imputed)	N
586	chr6_mcf_hap5	218295	218296	rs111469561	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p22.1	NR	rs111469561-?	NR	1E-6		0.29	[0.17-0.41] unit increase	Illumina [at least 560000] (imputed)	N
586	chr6_mcf_hap5	218662	218663	rs763009	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	6p22.1	LINC01556, ZNF311	rs763009-?	NR	7E-7		0.014226723	[0.0086-0.0199] unit decrease	Illumina [27896057] (imputed)	N
586	chr6_mcf_hap5	219807	219808	rs4947339	20526338	Johnson AD	2010-06-06	Nat Genet	Genome-wide meta-analyses identifies seven loci associated with platelet aggregation in response to agonists.	Platelet aggregation	Up to 3,991 European ancestry individuals	Up to 840 African American individuals	6p22.1	TRIM27	rs4947339-T	0.438	2E-6	(epinehprine)			Affymetrix, Illumina [~ 2330000] (imputed)	N
586	chr6_mcf_hap5	220146	220147	rs3130844	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA	6p22.1	NR	rs3130844-?	NR	7E-6		0.0564	[0.032-0.081] unit increase	Illumina [at least 560000] (imputed)	N
586	chr6_mcf_hap5	220387	220388	rs114683528	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Daytime sleep phenotypes	874 European ancestry individuals	NA	6p22.1	C6orf100, KRT18P1, TRIM27, HCG15, HCG16, ZNF311	rs114683528-T	NR	1E-6	(daytime resting)	2.435	[1.46-3.41] unit decrease	Affymetrix [7141204] (imputed)	N
587	chr6_mcf_hap5	284256	284257	rs3130893	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium HDL	115,082 European ancestry individuals	NA	6p22.1		rs3130893-A	0.880989	2E-10		0.037629	[0.026-0.049] unit increase	NR [11722792] (imputed)	N
587	chr6_mcf_hap5	284256	284257	rs3130893	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-6 fatty acid levels	115,006 European ancestry individuals	NA	6p22.1		rs3130893-A	0.880993	9E-9		0.0356831	[0.024-0.048] unit increase	NR [11722792] (imputed)	N
587	chr6_mcf_hap5	284256	284257	rs3130893	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Linoleic acid levels	115,006 European ancestry individuals	NA	6p22.1		rs3130893-A	0.880993	5E-9		0.0364876	[0.024-0.049] unit increase	NR [11722792] (imputed)	N
587	chr6_mcf_hap5	286823	286824	rs3131082	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p22.1	NR	rs3131082-?	NR	2E-7		0.1949	[0.12-0.27] unit decrease	Illumina [at least 560000] (imputed)	N
587	chr6_mcf_hap5	288305	288306	rs3129795	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs3129795-?		8E-6		1.0526316	[1.03-1.08]	Illumina [7645193] (imputed)	N
587	chr6_mcf_hap5	288305	288306	rs3129795	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs3129795-?		2E-6		1.6129031	[1.32-1.96]	Illumina [7645193] (imputed)	N
587	chr6_mcf_hap5	295711	295712	rs3129797	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	6p22.1	ZNF311	rs3129797-C	0.882471	2E-20		0.0273248	[0.022-0.033] unit increase	Affymetrix [NR] (imputed)	N
587	chr6_mcf_hap5	330137	330138	rs114631266	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p22.1	OR2W1	rs114631266-C	0.974	2E-6		0.284	[0.17-0.4] unit increase	Affymetrix, Illumina [7374092] (imputed)	N
587	chr6_mcf_hap5	331479	331480	rs114415956	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	OR2P1P	rs114415956-T	NR	3E-10		0.0401608	[0.028-0.053] unit decrease	Affymetrix [321016] (imputed)	N
587	chr6_mcf_hap5	334493	334493	rs559462124	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs559462124-?		5E-9	(Average across all tracts)			NR [8955960] (imputed)	N
587	chr6_mcf_hap5	334493	334493	rs559462124	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs559462124-?		3E-9	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
587	chr6_mcf_hap5	334493	334493	rs559462124	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs559462124-?		2E-9	(Posterior corona radiata )			NR [8955960] (imputed)	N
587	chr6_mcf_hap5	334493	334493	rs559462124	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs559462124-?		2E-8	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
587	chr6_mcf_hap5	334493	334493	rs559462124	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs559462124-?		2E-8	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
587	chr6_mcf_hap5	334493	334493	rs559462124	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs559462124-?		2E-8	(Cingulate gyrus)			NR [8955960] (imputed)	N
587	chr6_mcf_hap5	334493	334493	rs559462124	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs559462124-?		6E-11	(Posterior corona radiata )			NR [8955960] (imputed)	N
587	chr6_mcf_hap5	334493	334493	rs559462124	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs559462124-?		4E-8	(Cingulate gyrus)			NR [8955960] (imputed)	N
587	chr6_mcf_hap5	334493	334493	rs559462124	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs559462124-?		4E-11	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
587	chr6_mcf_hap5	334493	334493	rs559462124	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs559462124-?		2E-8	(Average across all tracts)			NR [8955960] (imputed)	N
587	chr6_mcf_hap5	334493	334493	rs559462124	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs559462124-?		2E-10	(Superior corona radiata)			NR [8955960] (imputed)	N
587	chr6_mcf_hap5	334493	334493	rs559462124	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	6p22.1	NR	rs559462124-?		2E-8	(Average across all tracts)			NR [8955960] (imputed)	N
587	chr6_mcf_hap5	334493	334493	rs559462124	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs559462124-?		4E-8	(Posterior corona radiata )			NR [8955960] (imputed)	N
587	chr6_mcf_hap5	334493	334493	rs559462124	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs559462124-?		3E-8	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
587	chr6_mcf_hap5	348250	348251	rs3131085	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p22.1	GABBR1, OR12D3, XXbac-BPG308K3.5, TRIM27, AL662791.1, OR2AD1P, OR2P1P, OR2B3, XXbac-BCX196D17.5, OR2N1P, OR2H4P, OR2B4P, XXbac-BPG308K3.6, RPL13P, ZNF90P2, HCG14, RNU6-930P, LINC01556, KRT18P1, RN7SL471P, HCG15, HCG16, ZNF311, XXbac-BPG258E24.10, OR2W1, SAR1P1, OR2J3, OR2J4P, OR2J2, AL645937.1, XXbac-BPG308J9.3, OR2U2P, OR14J1, OR5V1, OR10C1, OR11A1, XXbac-BPG13B8.11, OR2H1, UBDP1, MAS1LP1, MAS1L, RPS17P1, XXbac-BPG13B8.10, OR2I1P, UBD	rs3131085-A	0.07580321	1E-9	(EA, MHC class I polypeptide-related sequence A)	0.5111	[0.35-0.67] unit increase	Affymetrix [509946]	N
587	chr6_mcf_hap5	352238	352239	rs3129787	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129787-?		6E-11	(Posterior corona radiata )			NR [8955960] (imputed)	N
587	chr6_mcf_hap5	352238	352239	rs3129787	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129787-?		4E-11	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
587	chr6_mcf_hap5	352238	352239	rs3129787	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129787-?		3E-8	(Cingulate gyrus)			NR [8955960] (imputed)	N
587	chr6_mcf_hap5	352238	352239	rs3129787	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129787-?		5E-9	(Cingulate gyrus)			NR [8955960] (imputed)	N
587	chr6_mcf_hap5	352238	352239	rs3129787	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129787-?		5E-12	(Posterior corona radiata )			NR [8955960] (imputed)	N
587	chr6_mcf_hap5	352238	352239	rs3129787	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129787-?		2E-8	(Anterior corona radiata)			NR [8955960] (imputed)	N
587	chr6_mcf_hap5	352238	352239	rs3129787	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129787-?		2E-12	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
587	chr6_mcf_hap5	352238	352239	rs3129787	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129787-?		3E-9	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
587	chr6_mcf_hap5	352238	352239	rs3129787	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129787-?		5E-8	(Posterior corona radiata )			NR [8955960] (imputed)	N
587	chr6_mcf_hap5	355801	355801	rs11275996	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs11275996-?		4E-8	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
587	chr6_mcf_hap5	355801	355801	rs11275996	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs11275996-?		7E-9	(Superior corona radiata)			NR [8955960] (imputed)	N
587	chr6_mcf_hap5	361176	361177	rs3129788	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p22.1	OR2B3P, OR2J3	rs3129788-A	0.217	7E-19				Illumina [118177]	N
587	chr6_mcf_hap5	366088	366089	rs115166140	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p22.1	NR	rs115166140-?	NR	1E-9		0.1623	[0.11-0.21] unit increase	Illumina [at least 560000] (imputed)	N
587	chr6_mcf_hap5	368529	368530	rs4463283	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p22.1	OR2B3, OR2J3	rs4463283-A	0.06	1E-6	(EA)	2.61	[1.74-3.90]	Illumina [up to 547389]	N
587	chr6_mcf_hap5	378642	378643	rs3129178	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p22.1	NR	rs3129178-A	0.0951	6E-9	(EA)	0.0669	[0.044-0.089] unit decrease	Illumina [~ 11800000] (imputed)	N
588	chr6_mcf_hap5	406407	406408	rs3129119	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129119-?		3E-11	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
588	chr6_mcf_hap5	406407	406408	rs3129119	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129119-?		2E-8	(Superior corona radiata)			NR [8955960] (imputed)	N
588	chr6_mcf_hap5	406407	406408	rs3129119	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129119-?		2E-11	(Superior corona radiata)			NR [8955960] (imputed)	N
588	chr6_mcf_hap5	406407	406408	rs3129119	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129119-?		1E-9	(Retrolenticular part of internal capsule)			NR [8955960] (imputed)	N
588	chr6_mcf_hap5	415323	415324	rs3129120	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Major depressive disorder (lifetime)	16,301 British ancestry cases, 50,870 British ancestry controls	NA	6p22.1	NR	rs3129120-?	NR	4E-7		1.1049724	[1.06-1.15]	NR [5276842] (imputed)	N
588	chr6_mcf_hap5	415323	415324	rs3129120	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Help-seeking from a psychiatrist	36,286 British ancestry cases, 297,126 British ancestry controls	NA	6p22.1	NR	rs3129120-T	0.876	1E-10		1.081081	NR	NR [5276842] (imputed)	N
588	chr6_mcf_hap5	422295	422296	rs3130725	27668658	Iotchkova V	2016-11-01	Nat Genet	Discovery and refinement of genetic loci associated with cardiometabolic risk using dense imputation maps.	Cardiometabolic and hematological traits	up to 35,981 European ancestry individuals	up to 102,505 European ancestry individuals	6p22.1	ZNF311	rs3130725-G		3E-26	(WBC)	0.008	[0.006-0.01] unit decrease	Affymetrix, Illumina [17000000] (imputed)	N
588	chr6_mcf_hap5	430039	430040	rs62405961	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	OR2J2	rs62405961-A	NR	2E-8		0.0707669	[0.046-0.095] unit decrease	Affymetrix [321016] (imputed)	N
588	chr6_mcf_hap5	433820	433821	rs3129137	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129137-?		3E-8	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
588	chr6_mcf_hap5	437186	437187	rs4947263	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p22.1	NR	rs4947263-T	0.1178	3E-12		0.0127	[0.0092-0.0162] unit decrease	NR [7666894] (imputed)	N
588	chr6_mcf_hap5	439341	439346	rs369812099	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	6p22.1		rs369812099-T	NR	3E-8		0.0145	[0.0094-0.0196] unit increase	Affymetrix, Illumina [20535873] (imputed)	N
588	chr6_mcf_hap5	441859	441860	rs3129151	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	NR	rs3129151-?	NR	7E-8		5.388	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
588	chr6_mcf_hap5	442493	442494	rs3130740	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3130740-?		4E-9	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
588	chr6_mcf_hap5	445287	445288	rs3129157	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p22.1	OR2J2	rs3129157-A		3E-33		0.068	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
588	chr6_mcf_hap5	448080	448081	rs9257566	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	6p22.1	NR	rs9257566-?	NR	7E-30		1.2277772	[1.19-1.26]	Affymetrix, Illumina [12447948] (imputed)	N
588	chr6_mcf_hap5	449171	449172	rs9295795	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	6p22.1		rs9295795-T	0.94311	2E-8		0.026	[0.016-0.036] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
588	chr6_mcf_hap5	451253	451254	rs186983332	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p22.1	NR	rs186983332-?	NR	7E-6		0.2003	[0.11-0.29] unit decrease	Illumina [at least 560000] (imputed)	N
588	chr6_mcf_hap5	451953	451954	rs114503016	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p22.1		rs114503016-C	0.986	4E-13				Affymetrix [10369434] (imputed)	N
588	chr6_mcf_hap5	451953	451954	rs114503016	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p22.1		rs114503016-C	0.986	3E-16				Affymetrix [10369434] (imputed)	N
588	chr6_mcf_hap5	452990	452991	rs3116816	32595297	Kweon K	2018-04-01	Soa Chongsonyon Chongsin Uihak	Genome-Wide Analysis Reveals Four Novel Loci for Attention-Deficit Hyperactivity Disorder in Korean Youths.	Attention deficit hyperactivity disorder (inattention symptoms)	27 Korean ancestry child sibling pairs	NA	6p22.1	OR2J2, OR14J1	rs3116816-A	0.398	2E-7				Affymetrix [432921]	N
588	chr6_mcf_hap5	456709	456710	rs3130746	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p22.1	NR	rs3130746-?	NR	3E-6		0.1783	[0.1-0.25] unit increase	Illumina [at least 560000] (imputed)	N
588	chr6_mcf_hap5	459303	459304	rs3129171	32358547	Persyn E	2020-05-01	Nat Commun	Genome-wide association study of MRI markers of cerebral small vessel disease in 42,310 participants.	White matter integrity (fractional anisotropy)	17,663 European ancestry individuals	NA	6p22.1	ZFP57a, OR2J2, OR2H4P, XXbac-BPG308J9.3	rs3129171-A	0.242404	2E-9		0.294752	[0.2-0.39] unit increase	Affymetrix [NR] (imputed)	N
588	chr6_mcf_hap5	459303	459304	rs3129171	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129171-?		3E-9	(Retrolenticular part of internal capsule)			NR [8955960] (imputed)	N
588	chr6_mcf_hap5	459303	459304	rs3129171	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129171-?		3E-9	(Anterior corona radiata)			NR [8955960] (imputed)	N
588	chr6_mcf_hap5	459303	459304	rs3129171	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129171-?		2E-11	(Average across all tracts)			NR [8955960] (imputed)	N
588	chr6_mcf_hap5	459303	459304	rs3129171	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129171-?		9E-9	(Anterior corona radiata)			NR [8955960] (imputed)	N
588	chr6_mcf_hap5	459303	459304	rs3129171	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129171-?		4E-10	(Average across all tracts)			NR [8955960] (imputed)	N
588	chr6_mcf_hap5	459303	459304	rs3129171	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129171-?		2E-8	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
588	chr6_mcf_hap5	462138	462139	rs185008237	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	6p22.1	NR	rs185008237-?	NR	4E-6		0.0077326	[0.0045-0.011] unit increase	Affymetrix [805426] (imputed)	N
588	chr6_mcf_hap5	468591	468592	rs114224598	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling miserable	376,097 European ancestry individuals	NA	6p22.1	NR	rs114224598-A	0.0456381	3E-8		5.52	z score increase	NR [10847151] (imputed)	N
588	chr6_mcf_hap5	468591	468592	rs114224598	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p22.1	NR	rs114224598-?	NR	6E-9		0.175	[0.12-0.23] unit decrease	Illumina [at least 560000] (imputed)	N
588	chr6_mcf_hap5	483618	483619	rs139598127	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p22.1	NR	rs139598127-A	0.01045	2E-8	(SBDS)	0.06239	NR unit increase	Illumina [1671387] (imputed)	N
588	chr6_mcf_hap5	484277	484278	rs9257616	24047820	St Pourcain B	2013-09-18	Mol Autism	Common variation contributes to the genetic architecture of social communication traits.	Social communication problems	5,584 European ancestry children	1,364 European ancestry children	6p22.1	OR2J2, TRIM27, ZNF311, OR2W1, OR2B3, LOC651503, OR214J1, OR5V1, OR12D3, OR2J3	rs9257616-G	0.56	3E-7		0.093	[0.058-0.128] unit increase	Illumina [~ 2500000] (imputed)	N
589	chr6_mcf_hap5	561523	561524	rs1033568	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA		NR	rs1033568-A	0.429	1E-6		1.081	[1.05-1.11]	Illumina [11270530] (imputed)	N
589	chr6_mcf_hap5	563987	563988	rs3117425	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	6p22.1	NR	rs3117425-T	NR	2E-8		0.02019	[0.013-0.027] unit decrease	Affymetrix [10847151] (imputed)	N
589	chr6_mcf_hap5	563987	563988	rs3117425	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling nervous	373,121 European ancestry individuals	NA	6p22.1	ZNF391	rs3117425-T	0.119369	5E-8		5.47	z score decrease	NR [10847151] (imputed)	N
589	chr6_mcf_hap5	575643	575644	rs3117426	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3117426-?		4E-10	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
589	chr6_mcf_hap5	575643	575644	rs3117426	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3117426-?		2E-8	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
589	chr6_mcf_hap5	575643	575644	rs3117426	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3117426-?		1E-9	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
589	chr6_mcf_hap5	575643	575644	rs3117426	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3117426-?		4E-8	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
589	chr6_mcf_hap5	577766	577767	rs3117427	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Receptor for advanced glycosylation end products levels	21,758 European ancestry individuals	9,173 individuals	6p22.1		rs3117427-T	0.9	2E-11		0.0988	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
589	chr6_mcf_hap5	578858	578859	rs61735224	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p22.1	NR	rs61735224-T	0.01045	2E-8	(SBDS)	0.06239	NR unit increase	Illumina [1671387] (imputed)	N
589	chr6_mcf_hap5	587303	587304	rs3129682	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p22.1	GABBR1, OR12D3, XXbac-BPG308K3.5, TRIM27, AL662791.1, OR2AD1P, OR2P1P, OR2B3, XXbac-BCX196D17.5, OR2N1P, OR2H4P, OR2B4P, XXbac-BPG308K3.6, RPL13P, ZNF90P2, HCG14, RNU6-930P, LINC01556, KRT18P1, RN7SL471P, HCG15, HCG16, ZNF311, XXbac-BPG258E24.10, OR2W1, SAR1P1, OR2J3, OR2J4P, OR2J2, AL645937.1, XXbac-BPG308J9.3, OR2U2P, OR14J1, OR5V1, OR10C1, OR11A1, XXbac-BPG13B8.11, OR2H1, UBDP1, MAS1LP1, MAS1L, RPS17P1, XXbac-BPG13B8.10, OR2I1P, UBD	rs3129682-T	0.07742915	1E-19	(EA, MHC class I polypeptide-related sequence B)	0.7369	[0.58-0.89] unit decrease	Affymetrix [509946]	N
589	chr6_mcf_hap5	587592	587592	rs201452814	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-17 levels	7,760 Finnish ancestry individuals	NA	6p22.1	NR	rs201452814-GT		4E-6		0.2398	[0.14-0.34] SD units increase	NR [10700000] (imputed)	N
589	chr6_mcf_hap5	587592	587592	rs201452814	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Fibroblast growth factor basic levels	7,565 Finnish ancestry individuals	NA	6p22.1	NR	rs201452814-GT		4E-6		0.242	[0.14-0.34] SD units increase	NR [10700000] (imputed)	N
589	chr6_mcf_hap5	603905	603906	rs146977025	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p22.1	NR	rs146977025-T	0.01045	2E-8	(SBDS)	0.06239	NR unit increase	Illumina [1671387] (imputed)	N
589	chr6_mcf_hap5	605661	605662	rs6903989	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	6p22.1	NR	rs6903989-C		2E-8		0.07	[0.05-0.09] unit increase	NR [NR]	N
589	chr6_mcf_hap5	610287	610288	rs9257745	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	DDX6P1	rs9257745-T	NR	8E-10		0.0256365	[0.017-0.034] unit decrease	Affymetrix [321016] (imputed)	N
589	chr6_mcf_hap5	618597	618598	rs7745768	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	6p22.1	NR	rs7745768-?	NR	8E-7		0.131782	[0.08-0.184] unit increase	NR [13958389] (imputed)	N
589	chr6_mcf_hap5	620810	620811	rs148466862	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	6p22.1		rs148466862-?	NR	5E-12		0.0507	unit increase	NR [NR]	N
589	chr6_mcf_hap5	620810	620811	rs148466862	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Subjective well-being (MTAG)	388,538 European ancestry individuals	NA	6p22.1	NR	rs148466862-T	0.0411	8E-12		0.0324	[0.023-0.042] unit decrease	Illumina [NR] (imputed)	N
589	chr6_mcf_hap5	620810	620811	rs148466862	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Neuroticism (MTAG)	168,105 European ancestry individuals	NA	6p22.1	NR	rs148466862-T	0.0463	5E-10		0.0438	[0.03-0.058] unit increase	Illumina [NR] (imputed)	N
589	chr6_mcf_hap5	620810	620811	rs148466862	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms (MTAG)	354,862 European ancestry individuals	NA	6p22.1	NR	rs148466862-T	0.0425	1E-10		0.0343	[0.024-0.045] unit increase	Illumina [NR] (imputed)	N
589	chr6_mcf_hap5	626499	626500	rs9357080	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6p22.1	NR	rs9357080-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
589	chr6_mcf_hap5	627288	627289	rs7761746	30108155	Hebbar P	2018-08-14	J Lipid Res	Genome-wide association study identifies novel recessive genetic variants for high TGs in an Arab population.	Triglyceride levels	1,353 Kuwaiti ancestry individuals	1,176 Kuwaiti ancestry individuals	6p22.1	OR5V1	rs7761746-A	NR	1E-9		6.066	z-score increase	Illumina [632375]	N
589	chr6_mcf_hap5	630676	630677	rs9257774	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	6p22.1		rs9257774-?	NR	5E-8				Affymetrix [NR] (imputed)	N
589	chr6_mcf_hap5	630676	630677	rs9257774	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p22.1		rs9257774-G	0.499	5E-24				Affymetrix [10369434] (imputed)	N
589	chr6_mcf_hap5	632467	632468	rs7754402	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs7754402-?		2E-8	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
589	chr6_mcf_hap5	635449	635450	rs2207699	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6p22.1	OR5V1	rs2207699-T	NR	2E-10		0.0197089	[0.014-0.026] unit increase	Affymetrix [321114] (imputed)	N
589	chr6_mcf_hap5	638979	638980	rs9257794	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6p22.1		rs9257794-?	NR	7E-6		1.05596	[1.03-1.08]	NR [685523]	N
589	chr6_mcf_hap5	638979	638980	rs9257794	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	OR5V1	rs9257794-T	NR	1E-10		0.0227562	[0.016-0.03] unit decrease	Affymetrix [323858] (imputed)	N
589	chr6_mcf_hap5	638979	638980	rs9257794	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	OR5V1	rs9257794-T	NR	9E-11		0.022922	[0.016-0.03] unit decrease	Affymetrix [127266] (imputed)	N
589	chr6_mcf_hap5	638979	638980	rs9257794	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6p22.1	OR5V1	rs9257794-T	NR	3E-9		0.0207731	[0.014-0.028] unit decrease	Affymetrix [321114] (imputed)	N
589	chr6_mcf_hap5	640393	640394	rs3930883	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p22.1		rs3930883-G	0.357	7E-41				Affymetrix [10369434] (imputed)	N
589	chr6_mcf_hap5	644063	644064	rs9257800	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Pork consumption	335,576 European ancestry individuals	NA	6p22.1	LRRC16A, SCGN, SLC17A4, SLC17A1	rs9257800-?	NR	7E-11		0.0040428	[-0.00326-0.01135] unit decrease	Affymetrix [25921788] (imputed)	N
589	chr6_mcf_hap5	644063	644064	rs9257800	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Oily fish consumption	335,576 European ancestry individuals	NA	6p22.1	LRRC16A, SCGN, SLC17A4, SLC17A1, SLC17A3, SLC17A2	rs9257800-?	NR	7E-11		0.0241753	[0.017-0.031] unit increase	Affymetrix [25921788] (imputed)	N
589	chr6_mcf_hap5	644327	644328	rs7772982	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	OR5V1	rs7772982-C	NR	7E-9		0.0217566	[0.014-0.029] unit decrease	Affymetrix [321016] (imputed)	N
589	chr6_mcf_hap5	646095	646096	rs3749971	33909500	Moll M	2021-04-28	Am J Physiol Lung Cell Mol Physiol	A Systematic Analysis of Protein-altering Exonic Variants in Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease	up to 31,465 European ancestry cases, up to 203,688 European ancestry controls, up to 1,413 African ancestry cases, up to 6,080 African ancestry controls, up to 287 East Asian ancestry cases, up to 7,484 East Asian ancestry controls, up to 61 Hispanic cases, up to 613 Hispanic controls	NA	6p22.1	OR12D3	rs3749971-A	0.12	3E-11		1.11	[1.08 -1.14]	Illumina [at least 109036]	N
589	chr6_mcf_hap5	646095	646096	rs3749971	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p22.1	OR12D3	rs3749971-A		2E-38		0.045	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
589	chr6_mcf_hap5	646095	646096	rs3749971	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	6p22.1	NR	rs3749971-A	NR	3E-9		5.929	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
589	chr6_mcf_hap5	646675	646676	rs9257802	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	OR5V1	rs9257802-T	NR	6E-12		0.026998	[0.019-0.035] unit decrease	Affymetrix [323858] (imputed)	N
589	chr6_mcf_hap5	646675	646676	rs9257802	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	OR5V1	rs9257802-T	NR	2E-11		0.0261971	[0.019-0.034] unit decrease	Affymetrix [127266] (imputed)	N
589	chr6_mcf_hap5	646675	646676	rs9257802	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p22.1	OR5V1	rs9257802-T	NR	7E-9		0.0225586	[0.015-0.03] unit decrease	Affymetrix [323858] (imputed)	N
589	chr6_mcf_hap5	646675	646676	rs9257802	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	6p22.1	NR	rs9257802-?		3E-8	(Anterior corona radiata)			NR [8955960] (imputed)	N
589	chr6_mcf_hap5	646675	646676	rs9257802	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	OR5V1	rs9257802-T	NR	7E-11		6.531	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
589	chr6_mcf_hap5	649547	649548	rs238883	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p22.1	OR5V1	rs238883-G	NR	7E-10		0.0202353	[0.014-0.027] unit decrease	Affymetrix [323123] (imputed)	N
589	chr6_mcf_hap5	649547	649548	rs238883	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Non-Hodgkin's lymphoma	2,400 European ancestry cases, 410,350 European ancestry controls	NA	6p22.1		rs238883-A	NR	3E-7		1.177995	NR	Affymetrix [7846216] (imputed)	N
589	chr6_mcf_hap5	649547	649548	rs238883	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p22.1	OR5V1	rs238883-A	0.6771	1E-7		0.0371	[0.023-0.051] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
589	chr6_mcf_hap5	654582	654583	rs576800986	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	6p22.1	OR5V1	rs576800986-A	0.0016	8E-6		0.994	[0.56-1.43] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
589	chr6_mcf_hap5	655105	655106	rs9378134	23393555	Jensen RA	2013-02-05	PLoS One	Genome-wide association study of retinopathy in individuals without diabetes.	Retinopathy in non-diabetics	19,411 European ancestry individuals	NA	6p22.1	OR12D3	rs9378134-A	0.04	3E-6		0.49	[0.29-0.69] unit increase	Illumina [2675979] (imputed)	N
590	chr6_mcf_hap5	658432	658433	rs238869	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	OR5V1	rs238869-C	NR	4E-8		0.0177413	[0.011-0.024] unit decrease	Affymetrix [323858] (imputed)	N
590	chr6_mcf_hap5	658432	658433	rs238869	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	OR5V1	rs238869-C	NR	2E-8		0.0181435	[0.012-0.024] unit decrease	Affymetrix [127266] (imputed)	N
590	chr6_mcf_hap5	658432	658433	rs238869	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6p22.1	OR5V1	rs238869-C	NR	2E-9		0.0190121	[0.013-0.025] unit decrease	Affymetrix [321114] (imputed)	N
590	chr6_mcf_hap5	658432	658433	rs238869	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	6p22.1	NR	rs238869-C	0.3771	3E-8		1.0341262	[1.02-1.05]	Affymetrix, Illumina [NR] (imputed)	N
590	chr6_mcf_hap5	658467	658468	rs3094549	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	OR5V1	rs3094549-C	NR	9E-18		0.0266542	[0.021-0.033] unit decrease	Affymetrix [321016] (imputed)	N
590	chr6_mcf_hap5	658467	658468	rs3094549	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p22.1	OR5V1	rs3094549-C	NR	3E-10		0.0212798	[0.015-0.028] unit decrease	Affymetrix [323123] (imputed)	N
590	chr6_mcf_hap5	658521	658522	rs3094548	21946350	Soler Artigas M	2011-09-25	Nat Genet	Genome-wide association and large-scale follow up identifies 16 new loci influencing lung function.	Pulmonary function	48,201 European ancestry individuals	46,411 European ancestry individuals	6p22.1	OR12D2	rs3094548-G	NR	1E-7	(FEV1)	0.029	[0.019-0.039] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
590	chr6_mcf_hap5	658537	658539	rs34671475	32227112	Lee MA	2020-03-30	Hum Mol Genet	Common variation at 16p11.2 is associated with glycosuria in pregnancy: Findings from a genome-wide association study in European women.	Glycosuria in pregnancy (offspring genotype effect)	747 European ancestry cases, 2,991 European ancestry controls	NA	6p22.1	NR	rs34671475-C	0.03003544	3E-8		2.608679	[2.269056177-2.948302017]	Illumina [9873828] (imputed)	N
590	chr6_mcf_hap5	658596	658597	rs74294664	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	150,266 East Asian ancestry individuals	NA	6p22.1		rs74294664-A	0.075018	4E-26		0.0570823	[0.046-0.068] unit increase	Illumina [13478778] (imputed)	N
590	chr6_mcf_hap5	659650	659651	rs9257809	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p22.1	NR	rs9257809-G	0.1004	3E-8	(EA)	0.0627	[0.041-0.085] unit decrease	Illumina [~ 11800000] (imputed)	N
590	chr6_mcf_hap5	659650	659651	rs9257809	27527254	Gharahkhani P	2016-08-12	Lancet Oncol	Genome-wide association studies in oesophageal adenocarcinoma and Barrett's oesophagus: a large-scale meta-analysis.	Barrett's esophagus  or Esophageal adenocarcinoma	6,167 European ancestry Barrett's oesophagus cases, 4,112 European ancestry esophageal adenocarcinoma cases, 17,159 European ancestry controls	NA	6p22.1	MHC	rs9257809-A		6E-9		1.23	[1.14-1.31]	Illumina [11951684] (imputed)	N
590	chr6_mcf_hap5	659650	659651	rs9257809	27527254	Gharahkhani P	2016-08-12	Lancet Oncol	Genome-wide association studies in oesophageal adenocarcinoma and Barrett's oesophagus: a large-scale meta-analysis.	Barrett's esophagus	6,167 European ancestry cases, 17,159 European ancestry controls	NA	6p22.1	MHC	rs9257809-A		6E-9		1.2634	[1.18-1.34]	Illumina [11942825] (imputed)	N
590	chr6_mcf_hap5	659650	659651	rs9257809	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p22.1	OR12D3, OR12D2	rs9257809-G	0.233	1E-20				Illumina [118177]	N
590	chr6_mcf_hap5	659650	659651	rs9257809	22961001	Su Z	2012-09-09	Nat Genet	Common variants at the MHC locus and at chromosome 16q24.1 predispose to Barrett's esophagus.	Barrett's esophagus	Up to 1,852 European ancestry cases, 5,172 European ancestry controls	5,986 European ancestry cases, 12,825 European ancestry controls	6p22.1	OR2D12, OR2D13, MHC	rs9257809-A	0.87	4E-9		1.21	[1.13-1.28]	Illumina [521744]	N
590	chr6_mcf_hap5	659906	659907	rs379157	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6p22.1	OR5V1	rs379157-G	NR	5E-8		0.0168887	[0.011-0.023] unit decrease	Affymetrix [321114] (imputed)	N
590	chr6_mcf_hap5	659906	659907	rs379157	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	6p22.1	NR	rs379157-?	NR	2E-9	(MIC-A)	0.426671	[0.29-0.57] unit decrease	Illumina [11901634] (imputed)	N
590	chr6_mcf_hap5	668604	668605	rs2073149	35215271	Almandil NB	2022-01-27	Pharmaceuticals (Basel)	Integration of Transcriptome and Exome Genotyping Identifies Significant Variants with Autism Spectrum Disorder.	Autism spectrum disorder	70 Arab ancestry cases, 132 Arab ancestry controls	NA	6p22.1	NA	rs2073149-A	0.5795	9E-9		0.2367	[0.143-0.3918]	Illumina [243345]	N
590	chr6_mcf_hap5	669287	669288	rs7775217	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Treatment or medication use - levothyroxine sodium (UKB data field 20003_1141191044)	18,688 European ancestry cases, 437,588 European ancestry controls	NA	6p22.1		rs7775217-A	0.007711	3E-13		0.46	[0.33-0.59] unit increase	NR [11842647] (imputed)	N
590	chr6_mcf_hap5	675498	675499	rs429479	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	6p22.1	OR12D2	rs429479-A	0.9041	2E-12		0.0471	[0.034-0.06] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
590	chr6_mcf_hap5	675498	675499	rs429479	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	OR5V1	rs429479-A	NR	5E-15		7.818	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
590	chr6_mcf_hap5	690151	690152	rs202217993	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Gynecologic disease	7,975 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs202217993-?		1E-8		1.18	[1.11-1.25]	Illumina [7645193] (imputed)	N
590	chr6_mcf_hap5	690151	690152	rs202217993	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Gynecologic disease	7,315 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs202217993-?		2E-9				Illumina [7645193] (imputed)	N
590	chr6_mcf_hap5	690178	690179	rs16894878	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	6p22.1	OR12D1P, OR11A1	rs16894878-A	0.001	1E-6		34.08	[3.52-329.69]	Illumina [1556551]	N
590	chr6_mcf_hap5	700050	700051	rs3128851	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	OR5V1, OR11A1	rs3128851-T	NR	9E-12		0.0207103	[0.015-0.027] unit decrease	Affymetrix [321016] (imputed)	N
590	chr6_mcf_hap5	702114	702115	rs3117191	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	6p22.1	Intergenic	rs3117191-T	NR	2E-6		0.022413	[0.013-0.032] unit decrease	Illumina [13520550] (imputed)	N
590	chr6_mcf_hap5	709064	709065	rs55740552	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p22.1	NR	rs55740552-?	NR	1E-10		0.1637	[0.11-0.21] unit decrease	Illumina [at least 560000] (imputed)	N
590	chr6_mcf_hap5	711266	711267	rs17177632	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	6p22.1		rs17177632-?	NR	5E-8				Affymetrix [NR] (imputed)	N
590	chr6_mcf_hap5	711266	711267	rs17177632	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p22.1		rs17177632-A	0.988	2E-8				Affymetrix [10369434] (imputed)	N
590	chr6_mcf_hap5	716179	716180	rs2023463	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in diabetes	70,762 European ancestry individuals, 20,967 African American individuals	NA	6p22.1	6M1-18	rs2023463-T	0.092	1E-11		1.01	[0.72-1.3] unit decrease	Affymetrix [NR] (imputed)	N
590	chr6_mcf_hap5	718640	718641	rs2523443	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p22.1	NR	rs2523443-A	0.1188	1E-12		0.013	[0.0095-0.0165] unit decrease	NR [7666894] (imputed)	N
590	chr6_mcf_hap5	735354	735355	rs2143668	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	6p22.1	OR2H1	rs2143668-A	0.8962	1E-7	(EA)	0.0033	[0.0021-0.0045] unit increase	Affymetrix [NR] (imputed)	N
590	chr6_mcf_hap5	735354	735355	rs2143668	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	6p22.1	OR2H1	rs2143668-A	0.896	1E-9		0.0033	[0.0021-0.0045] unit increase	Affymetrix [NR] (imputed)	N
590	chr6_mcf_hap5	737595	737596	rs4713226	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	UBDP1	rs4713226-A	NR	5E-10		0.0303439	[0.021-0.04] unit decrease	Affymetrix [321016] (imputed)	N
590	chr6_mcf_hap5	737595	737596	rs4713226	22610502	Kennedy RB	2012-05-19	Hum Genet	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IFN-alpha)	Up to 512 European ancestry individuals, up to 199 African American individuals	NA	6p22.1	OR2H1	rs4713226-A		2E-8	(AA)			Illumina [NR]	N
590	chr6_mcf_hap5	746156	746157	rs77454196	33002439	Jin G	2020-10-01	Lancet Oncol	Genetic risk, incident gastric cancer, and healthy lifestyle: a meta-analysis of genome-wide association studies and prospective cohort study.	Gastric cancer	10,254 Han Chinese ancestry cases, 10,914 Han Chinese ancestry controls	NA	6p22.1	NR	rs77454196-A	0.05	3E-6		0.78	NR	Affymetrix, Illumina [6957974] (imputed)	N
590	chr6_mcf_hap5	748883	748884	rs72500877	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	349,856 European ancestry individuals, 91,908 East Asian ancestry individuals	NA	6p22.1		rs72500877-T	NR	2E-9		0.0296	[0.02-0.039] unit increase	Affymetrix, Illumina [20529536] (imputed)	N
590	chr6_mcf_hap5	761422	761423	rs1233493	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs1233493-?		1E-8	(Superior corona radiata)			NR [8955960] (imputed)	N
590	chr6_mcf_hap5	761422	761423	rs1233493	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs1233493-?		3E-9	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
590	chr6_mcf_hap5	761422	761423	rs1233493	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in non-diabetics	152,624 European ancestry individuals, 36,369 African American individuals	NA	6p22.1	MAS1L	rs1233493-A	0.89	9E-9		0.481	[0.32-0.65] unit increase	Affymetrix [NR] (imputed)	N
590	chr6_mcf_hap5	764911	764912	rs1233491	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p22.1	MAS1L, LOC729653	rs1233491-C	0.23	1E-20				Illumina [118177]	N
590	chr6_mcf_hap5	764911	764912	rs1233491	25827949	Kunz M	2015-05-04	Exp Dermatol	Genome-wide association study identifies new susceptibility loci for cutaneous lupus erythematosus.	Cutaneous lupus erythematosus	151 European ancestry cases, 1,288 European ancestry controls	219 European ancestry cases, 262 European ancestry controls	6p22.1	MAS1L	rs1233491-C	0.088	8E-10		2.2	[1.58-3.08]	Affymetrix [906600]	N
590	chr6_mcf_hap5	773390	773391	rs1233485	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p22.1		rs1233485-T	0.731	7E-12				Affymetrix [10369434] (imputed)	N
590	chr6_mcf_hap5	774167	774168	rs3131019	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	6p22.1		rs3131019-?	NR	5E-8				Affymetrix [NR] (imputed)	N
590	chr6_mcf_hap5	780596	780597	rs1233480	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p22.1	NR	rs1233480-T	0.1095	5E-8	(EA)	0.0586	[0.037-0.08] unit decrease	Illumina [~ 11800000] (imputed)	N
590	chr6_mcf_hap5	783406	783407	rs385816	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p22.1	NR	rs385816-?	NR	5E-7		0.0742	[0.045-0.103] unit increase	Illumina [at least 560000] (imputed)	N
591	chr6_mcf_hap5	790471	790472	rs2523430	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p22.1		rs2523430-G	0.513	3E-9				Affymetrix [10369434] (imputed)	N
591	chr6_mcf_hap5	791157	791158	rs12210150	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	153,512 East Asian ancestry individuals	NA	6p22.1		rs12210150-T	0.038389	1E-12		0.0584816	[0.042-0.075] unit increase	Illumina [13479135] (imputed)	N
591	chr6_mcf_hap5	813819	813820	rs362538	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	6p22.1		rs362538-G	0.902	2E-109		0.4	[-0.44--0.36] % decrease	Affymetrix [NR] (imputed)	N
591	chr6_mcf_hap5	813819	813820	rs362538	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular hemoglobin	20,714 Amish, White ancestry individuals, 447 Asian ancestry individuals, 11,246 Black individuals, 13,834 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	6p22.1		rs362538-C	NR	3E-10		0.2	[0.14-0.26] unit increase	Illumina [94681438]	N
591	chr6_mcf_hap5	818991	818992	rs3094575	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	OR2I1P	rs3094575-T	NR	2E-8		0.0185304	[0.012-0.025] unit decrease	Affymetrix [321016] (imputed)	N
591	chr6_mcf_hap5	823037	823038	rs453658	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	121,047 East Asian ancestry individuals	NA	6p22.1	NR	rs453658-G	0.306783	4E-12		0.030549	[0.022-0.039] SD units decrease	Affymetrix, Illumina [16286195] (imputed)	N
591	chr6_mcf_hap5	824088	824089	rs16895057	23456168	Hao Y	2013-03-03	Hum Genet	Genome-wide association study in Han Chinese identifies three novel loci for human height.	Height	6,534 Han Chinese ancestry individuals	1,881 Han Chinese ancestry individuals from 637 families	6p22.1	OR2I1P	rs16895057-T	0.95	3E-6		0.153	[0.088-0.218] unit increase	Affymetrix [1532051] (imputed)	N
591	chr6_mcf_hap5	824530	824531	rs11724	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	6p22.1		rs11724-G	0.692447	2E-8		0.0220867	[0.014-0.03] unit increase	Illumina [13476299] (imputed)	N
591	chr6_mcf_hap5	826887	826888	rs8337	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p22.1	UBD	rs8337-C		1E-19		0.022	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
591	chr6_mcf_hap5	829588	829589	rs11970475	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	6p22.1	UBD	rs11970475-A	0.19	2E-24		0.07	[0.054-0.086] unit increase	Affymetrix, Illumina [2704730] (imputed)	N
591	chr6_mcf_hap5	834155	834156	rs422878	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	GABBR1	rs422878-T	NR	1E-8		0.0205792	[0.014-0.028] unit decrease	Affymetrix [321016] (imputed)	N
591	chr6_mcf_hap5	834155	834156	rs422878	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	6p22.1	UBD, OR2H2	rs422878-C	0.81	1E-8		5.72	z-score increase	Affymetrix [4311822] (imputed)	N
591	chr6_mcf_hap5	834185	834186	rs115070292	27922604	Yu H	2016-12-06	Mol Psychiatry	Common variants on 2p16.1, 6p22.1 and 10q24.32 are associated with schizophrenia in Han Chinese population.	Schizophrenia	4,384 Han Chinese ancestry cases and 5,770 Han Chinese ancestry controls	4,339 Han Chinese ancestry cases and 7,043 Han Chinese ancestry controls	6p22.1	GABBR1	rs115070292-?		5E-10		1.3	[1.22-1.38]	Illumina [at least 473583] (imputed)	N
591	chr6_mcf_hap5	837822	837823	rs413082	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	GABBR1	rs413082-A	NR	3E-8		0.0199613	[0.013-0.027] unit decrease	Affymetrix [321016] (imputed)	N
591	chr6_mcf_hap5	841409	841410	rs142818680	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mumps	31,227 European ancestry cases, 54,153 European ancestry controls	NA	6p22.1	NR	rs142818680-?	NR	7E-12		0.5892	[0.42-0.76] unit decrease	Illumina [at least 560000] (imputed)	N
591	chr6_mcf_hap5	842965	842966	rs3025652	31272903	Sunadome H	2019-07-01	Allergol Int	Correlation between eosinophil count, its genetic background and body mass index: The Nagahama Study.	Eosinophil counts	4,650 East Asian ancestry individuals	NA	6p22.1	NR	rs3025652-A	0.23	4E-7		0.1237	NR unit increase	Illumina [103680] (imputed)	N
591	chr6_mcf_hap5	850000	850001	rs1233396	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in HDL	115,082 European ancestry individuals	NA	6p22.1		rs1233396-G	0.861673	7E-10		0.0329165	[0.022-0.043] unit increase	NR [11722792] (imputed)	N
591	chr6_mcf_hap5	850000	850001	rs1233396	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium HDL	115,082 European ancestry individuals	NA	6p22.1		rs1233396-G	0.861673	3E-9		0.0327783	[0.022-0.044] unit increase	NR [11722792] (imputed)	N
591	chr6_mcf_hap5	851290	851291	rs926552	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	6p22.1	NA	rs926552-G		4E-10		0.0184243	[0.013-0.024] unit increase	Illumina [13288253] (imputed)	N
591	chr6_mcf_hap5	851290	851291	rs926552	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Major depressive disorder (lifetime)	16,301 British ancestry cases, 50,870 British ancestry controls	NA	6p22.1	NR	rs926552-G	0.86	4E-8		1.1074197	[1.07-1.14]	NR [5276842] (imputed)	N
591	chr6_mcf_hap5	851290	851291	rs926552	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking initiation (ever regular vs never regular)	up to 433,216 European ancestry individuals	NA	6p22.1	SNORD32B	rs926552-A	0.134	1E-8		0.0181	[0.012-0.024] unit decrease	Illumina [~ 250000] (imputed)	N
591	chr6_mcf_hap5	851290	851291	rs926552	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Diastolic blood pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	154,543 European ancestry individuals, 26,183 South Asian ancestry individuals	6p22.1	SNORD32B	rs926552-T	0.111	7E-8		0.26	[0.16-0.36] unit decrease	Illumina [247039]	N
591	chr6_mcf_hap5	852855	852856	rs1233393	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p22.1	NR	rs1233393-G	0.12	3E-7		1.13	[1.08-1.18]	Affymetrix [9886854] (imputed)	N
591	chr6_mcf_hap5	852855	852856	rs1233393	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p22.1	NR	rs1233393-G	0.12	2E-11			[NR]	Affymetrix [9886854] (imputed)	N
591	chr6_mcf_hap5	852855	852856	rs1233393	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p22.1	NR	rs1233393-G	0.12	2E-9		1.11	[1.07-1.15]	Affymetrix [9886854] (imputed)	N
591	chr6_mcf_hap5	852855	852856	rs1233393	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p22.1	NR	rs1233393-G	0.12	3E-11			[NR]	Affymetrix [9886854] (imputed)	N
591	chr6_mcf_hap5	852855	852856	rs1233393	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in non-current smokers	16,488 European ancestry cases, 169,688 European ancestry controls	NA	6p22.1	NR	rs1233393-G	0.12	2E-9		1.11	[1.07-1.15]	Affymetrix [9886854] (imputed)	N
591	chr6_mcf_hap5	852855	852856	rs1233393	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in never smokers	8,631 European ancestry cases, 120,544 European ancestry controls	NA	6p22.1	NR	rs1233393-G	0.12	2E-7		1.13	[1.08-1.18]	Affymetrix [9886854] (imputed)	N
591	chr6_mcf_hap5	852855	852856	rs1233393	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in ever smokers	12,446 European ancestry cases, 59,145 European ancestry controls	NA	6p22.1	NR	rs1233393-G	0.12	3E-6		1.11	[1.06-1.16]	Affymetrix [9886854] (imputed)	N
591	chr6_mcf_hap5	852855	852856	rs1233393	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p22.1	NR	rs1233393-G	0.1223	8E-13		0.0129	[0.0094-0.0164] unit decrease	NR [7666894] (imputed)	N
591	chr6_mcf_hap5	854618	854619	rs12524535	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Experiencing mood swings	373,733 European ancestry individuals	NA	6p22.1	TRIM27	rs12524535-A	0.0690112	8E-9		5.77	z score decrease	NR [10847151] (imputed)	N
591	chr6_mcf_hap5	858980	858981	rs2235698	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6p22.1		rs2235698-?	NR	2E-7		0.935071	[0.91-0.96]	NR [685523]	N
591	chr6_mcf_hap5	858980	858981	rs2235698	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	6p22.1	OR2H2	rs2235698-G	0.23	2E-10		6.36	z-score increase	Affymetrix [4312306] (imputed)	N
591	chr6_mcf_hap5	863682	863683	rs3095274	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p22.1		rs3095274-A	0.295	1E-10				Affymetrix [10369434] (imputed)	N
591	chr6_mcf_hap5	866269	866270	rs17508548	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	6p22.1	NR	rs17508548-?	NR	1E-8		0.02016	[0.013-0.027] unit increase	Affymetrix [10847151] (imputed)	N
591	chr6_mcf_hap5	867964	867965	rs56020557	28440896	Yin X	2017-04-25	Am J Med Genet B Neuropsychiatr Genet	Genome-wide meta-analysis identifies a novel susceptibility signal at CACNA2D3 for nicotine dependence.	Nicotine dependence	7,297 European ancestry cases, 5,577 European ancestry controls, 918 European ancestry whole genome sequenced cases, 921 European ancestry whole genome sequenced controls, African American cases, 1,500 African American controls	NA	6p22.1	GABBR1	rs56020557-T		5E-6	(EA)	0.05	[0.03-0.07] unit increase	Illumina [at least 3251541] (imputed)	N
591	chr6_mcf_hap5	868575	868576	rs28893517	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	6p22.1	NR	rs28893517-G	NR	5E-10		0.02848	[0.019-0.037] unit increase	Affymetrix [10847151] (imputed)	N
591	chr6_mcf_hap5	869284	869285	rs28986304	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	6p22.1	NR	rs28986304-T	NR	3E-9		5.932	z score decrease	Affymetrix [10847151] (imputed)	N
591	chr6_mcf_hap5	869284	869285	rs28986304	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	6p22.1	TRIM27	rs28986304-T	0.126444	8E-10		6.14	z score decrease	NR [10847151] (imputed)	N
591	chr6_mcf_hap5	870517	870518	rs28986306	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Depression	at least 5,919 European ancestry cases, at least 130,691 European ancestry controls	634,037 European ancestry cases, 1,308,690 European ancestry controls	6p22.1	GABBR1	rs28986306-C	0.0507	2E-9		0.02608803	[0.016-0.036] unit decrease	NR [9417325] (imputed)	N
591	chr6_mcf_hap5	872247	872248	rs362517	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	GABBR1	rs362517-A	NR	1E-10		0.0398451	[0.028-0.052] unit decrease	Affymetrix [321016] (imputed)	N
591	chr6_mcf_hap5	873518	873519	rs3025642	30172743	Liang X	2018-08-30	Bone	Assessing the genetic correlations between early growth parameters and bone mineral density: A polygenic risk score analysis.	Ulna and radius bone mineral density	2,286 European ancestry individuals	NA	6p22.1	GABBR1	rs3025642-?	NR	8E-7				Affymetrix [753382]	N
591	chr6_mcf_hap5	874043	874044	rs2267633	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	6p22.1	intergenic	rs2267633-A	0.87355	1E-9		6.079	z score decrease	Illumina [18485882] (imputed)	N
591	chr6_mcf_hap5	878607	878608	rs740883	30804558	Grove J	2019-02-25	Nat Genet	Identification of common genetic risk variants for autism spectrum disorder.	Autism spectrum disorder	18,381 European ancestry cases, 27,969 European ancestry controls	2,119 European ancestry cases, 142,379 European ancestry controls	6p22.1	Intergenic	rs740883-T	0.088	1E-6		1.1160713	[NR]	Illumina [9112387] (imputed)	N
591	chr6_mcf_hap5	883193	883194	rs41286287	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	6p22.1	NR	rs41286287-A	NR	2E-8		5.59	z score increase	Affymetrix [10847151] (imputed)	N
591	chr6_mcf_hap5	883193	883194	rs41286287	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling miserable	376,097 European ancestry individuals	NA	6p22.1	TRIM27	rs41286287-A	0.0707157	1E-8		5.72	z score increase	NR [10847151] (imputed)	N
591	chr6_mcf_hap5	883638	883639	rs29253	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	GABBR1	rs29253-G	NR	3E-12		0.0329464	[0.024-0.042] unit decrease	Affymetrix [321016] (imputed)	N
591	chr6_mcf_hap5	897466	897467	rs41291770	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	145,648 East Asian ancestry individuals	NA	6p22.1	NR	rs41291770-T	0.792877	4E-11		0.030339	[0.021-0.039] SD units decrease	Affymetrix, Illumina [16710488] (imputed)	N
591	chr6_mcf_hap5	899443	899444	rs143229677	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	6p22.1	GABBR1	rs143229677-A	0.0035	3E-13		0.2309051	[0.17-0.29] unit increase	Affymetrix [~ 2500000] (imputed)	N
591	chr6_mcf_hap5	905132	905133	rs62392942	28440896	Yin X	2017-04-25	Am J Med Genet B Neuropsychiatr Genet	Genome-wide meta-analysis identifies a novel susceptibility signal at CACNA2D3 for nicotine dependence.	Nicotine dependence	7,297 European ancestry cases, 5,577 European ancestry controls, 918 European ancestry whole genome sequenced cases, 921 European ancestry whole genome sequenced controls, African American cases, 1,500 African American controls	NA	6p22.1	GABBR1	rs62392942-T		1E-6		0.06	[0.04-0.08] unit decrease	Illumina [at least 3251541] (imputed)	N
591	chr6_mcf_hap5	906708	906709	rs111508444	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p22.1	NR	rs111508444-A	0.945	2E-19		1.522	[1.43-1.61]	Illumina [11270530] (imputed)	N
591	chr6_mcf_hap5	910243	910244	rs3095267	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine without aura	7,107 European ancestry cases, 69,427 European ancestry controls	NA	6p22.1	intergenic	rs3095267-?	0.81	9E-6		1.12	[1.06-1.18]	Affymetrix, Illumina [~ 2300000] (imputed)	N
591	chr6_mcf_hap5	910298	910299	rs3131856	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical thickness (MOSTest)	26,502 European ancestry individuals	NA	6p22.1	RALGPS2, ANGPTL1	rs3131856-?		2E-10				NR [7428630] (imputed)	N
591	chr6_mcf_hap5	910298	910299	rs3131856	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	6p22.1	LRRC16A, SCGN, SLC17A4, SLC17A1, SLC17A3, SLC17A2, TRIM38, HIST1H1A, HIST1H3A, HIST1H4A, HIST1H4B, HIST1H3B, HIST1H2AB, HIST1H2BB, HIST1H3C, HIST1H1C, HFE, HIST1H2BC, HIST1H2AC, HIST1H2BD, HIST1H2BE, HIST1H4D, HIST1H3D, HIST1H2AD, HIST1H2BF, HIST1H4E, HIST1H3G, HIST1H2BI, BTN3A2, BTN2A2, BTN3A1, BTN3A3, BTN2A1, BTN1A1, HMGN4, ABT1, ZNF322, HIST1H2BJ, HIST1H2AG, HIST1H2BK, HIST1H4I, HIST1H2AH, POM121L2, ZNF391, ZNF184, HIST1H2BL, HIST1H2AI, HIST1H3H, HIST1H2AJ, HIST1H2BM, HIST1H4J, HIST1H4K, HIST1H2AK, HIST1H2BN, HIST1H2AL, HIST1H1B, HIST1H3I, HIST1H4L, HIST1H3J, HIST1H2AM, HIST1H2BO, OR2B2, OR2B6, ZNF165, ZSCAN16, ZKSCAN8, ZSCAN9, ZKSCAN4, NKAPL, PGBD1, ZSCAN31, ZKSCAN3, ZSCAN12, ZSCAN23, GPX6, SCAND3, TRIM27, C6orf100, ZNF311, OR2W1, OR2B3, OR2J1, OR2J3, OR2J2, OR14J1, OR5V1, OR12D3, OR12D2, OR11A1, OR10C1, OR2H1, MAS1L, UBD, GABBR1, OR2H2	rs3131856-?		7E-16				NR [7428630] (imputed)	N
591	chr6_mcf_hap5	910298	910299	rs3131856	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p22.1	NR	rs3131856-?	NR	1E-7		0.1953	[0.12-0.27] unit decrease	Illumina [at least 560000] (imputed)	N
591	chr6_mcf_hap5	912894	912895	rs9257927	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs9257927-?		1E-8		1.66	[1.39-1.97]	Illumina [7645193] (imputed)	N
591	chr6_mcf_hap5	914630	914631	rs29232	19664746	Tse KP	2009-08-05	Am J Hum Genet	Genome-wide association study reveals multiple nasopharyngeal carcinoma-associated loci within the HLA region at chromosome 6p21.3.	Nasopharyngeal carcinoma	277 Han Chinese ancestry cases, 285 Han Chinese ancestry controls	635 Han Chinese ancestry cases, 1,640 Han Chinese ancestry controls	6p22.1	GABBR1	rs29232-A	0.46	9E-17		1.67	[1.48-1.88]	Illumina [480365]	N
591	chr6_mcf_hap5	914972	914973	rs3117318	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fish- and plant-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	6p22.1	LRRC16A, SCGN, SLC17A4, SLC17A1, SLC17A3, SLC17A2, TRIM38, HIST1H1A, HIST1H3A, HIST1H4A, HIST1H4B, HIST1H3B, HIST1H2AB, HIST1H2BB, HIST1H3C, HIST1H1C, HFE, HIST1H4C, HIST1H1T, HIST1H2BC, HIST1H2AC, HIST1H2BD, HIST1H2BE, HIST1H4D, HIST1H3D, HIST1H2AD, HIST1H2BF, HIST1H4E, HIST1H3G, HIST1H2BI, BTN3A2, BTN2A2, BTN3A1, BTN3A3, BTN2A1, BTN1A1, HMGN4, ABT1, ZNF322, HIST1H2BJ, HIST1H2AG, HIST1H2BK, HIST1H4I, HIST1H2AH, PRSS16, POM121L2, ZNF391, ZNF184, HIST1H2BL, HIST1H2AI, HIST1H3H, HIST1H2AJ, HIST1H2BM, HIST1H4J, HIST1H4K, HIST1H2AK, HIST1H2BN, HIST1H2AL, HIST1H1B, HIST1H3I, HIST1H4L, HIST1H3J, HIST1H2AM, HIST1H2BO, OR2B2, OR2B6, ZNF165, ZSCAN16, ZKSCAN8, ZSCAN9, ZKSCAN4, NKAPL, PGBD1, ZSCAN31, ZKSCAN3, ZSCAN12, ZSCAN23, GPX6, SCAND3, TRIM27, C6orf100, ZNF311, OR2W1, OR2B3, OR2J1, OR2J3, OR2J2, OR14J1, OR5V1, OR12D3, OR12D2, OR11A1, OR10C1, OR2H1, MAS1L, UBD, GABBR1, OR2H2	rs3117318-?	NR	7E-9		0.0168393	[0.011-0.023] unit increase	Affymetrix [25921788] (imputed)	N
591	chr6_mcf_hap5	915076	915077	rs3131854	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p22.1		rs3131854-T	0.213	6E-18				Affymetrix [10369434] (imputed)	N
592	chr6_mcf_hap5	922142	922143	rs188289856	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p22.1	NR	rs188289856-?	NR	6E-8		0.2325	[0.15-0.32] unit increase	Illumina [at least 560000] (imputed)	N
592	chr6_mcf_hap5	925408	925409	rs1233367	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6p22.1	MOG	rs1233367-G	NR	3E-8		0.0181448	[0.012-0.025] unit decrease	Affymetrix [321114] (imputed)	N
592	chr6_mcf_hap5	926503	926504	rs9468569	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p22.1	MOG, ZFP57, ZDHHC20P1	rs9468569-A	0.01203611	1E-16	(EA, Alpha-2-macroglobulin receptor-associated protein)	1.631	[1.25-2.01] unit increase	Affymetrix [509946]	N
592	chr6_mcf_hap5	927300	927301	rs29234	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	6p22.1	Intergenic	rs29234-?	NR	2E-8		2.219	[NR]	Affymetrix [492217] (imputed)	N
592	chr6_mcf_hap5	929508	929509	rs2252711	23284291	Hancock DB	2012-12-20	PLoS Genet	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (smoking interaction)	50,047 European ancestry individuals	NA	6p22.1	MOG	rs2252711-T	NR	4E-7	(FEV1/FVC, Ever-smoking)			NR [~ 2500000] (imputed)	N
592	chr6_mcf_hap5	930136	930137	rs16895223	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	MOG	rs16895223-G	NR	4E-10		0.0263599	[0.018-0.035] unit decrease	Affymetrix [321016] (imputed)	N
592	chr6_mcf_hap5	931346	931347	rs182971160	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p22.1	NR	rs182971160-?	NR	2E-7		0.3024	[0.19-0.42] unit increase	Illumina [at least 560000] (imputed)	N
592	chr6_mcf_hap5	937197	937198	rs3130253	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p22.1	MOG	rs3130253-A		1E-44		0.053	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
592	chr6_mcf_hap5	947513	947514	rs28367493	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p22.1		rs28367493-?	NR	2E-11		0.0217788	[0.016-0.028] unit decrease	Affymetrix [20259828] (imputed)	N
592	chr6_mcf_hap5	948727	948728	rs75834742	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	NR	rs75834742-?	NR	6E-7		4.996	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
592	chr6_mcf_hap5	949343	949344	rs396660	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	6p22.1	NR	rs396660-?	NR	3E-10	(MIC-A)	0.504823	[0.35-0.66] unit increase	Illumina [11901634] (imputed)	N
592	chr6_mcf_hap5	950043	950044	rs9257953	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	91,908 East Asian ancestry individuals	NA	6p22.1		rs9257953-A	0.223075	3E-9		0.0321111	[0.022-0.043] unit increase	Illumina [13469940] (imputed)	N
592	chr6_mcf_hap5	950893	950894	rs17369215	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	6p22.1	Intergenic	rs17369215-T	0.2278	2E-11	(MTAG)	0.0183	[0.013-0.024] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
592	chr6_mcf_hap5	951298	951299	rs17184549	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	6p22.1	Intergenic	rs17184549-A	0.2165	1E-8	(MTAG)	0.0124	[0.0081-0.0167] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
592	chr6_mcf_hap5	951298	951299	rs17184549	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	6p22.1	Intergenic	rs17184549-A	0.2168	4E-11	(MTAG)	0.0133	[0.0094-0.0172] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
592	chr6_mcf_hap5	952725	952726	rs385492	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Uterine fibroids (MTAG)	5,236 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs385492-?		5E-6		1.0309278	[1.02-1.04]	Illumina [7645193] (imputed)	N
592	chr6_mcf_hap5	952725	952726	rs385492	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p22.1	HCG4, HCG4B, HCG8, HCG9, HLA-A, HLA-F, HLA-F-AS1, HLA-G, HLA-H, HLA-J, IFITM4P, LOC554223, MOG, PPP1R11, RNF39, ZFP57, ZNRD1, ZNRD1-AS1	rs385492-T		4E-9		1.06	[1.04-1.08]	Affymetrix, Illumina [NR]	N
592	chr6_mcf_hap5	952725	952726	rs385492	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	6p22.1	NR	rs385492-T	NR	1E-8		1.06	[NR]	Illumina [7158791] (imputed)	N
592	chr6_mcf_hap5	955380	955381	rs3117292	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	ZFP57	rs3117292-G	NR	4E-12		0.0204333	[0.015-0.026] unit decrease	Affymetrix [321016] (imputed)	N
592	chr6_mcf_hap5	955434	955435	rs9257985	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Gynecologic disease (multivariate analysis)	up to 7,975 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs9257985-?		2E-8	(uterine fibroid, uterine cervical cancer)			Illumina [7645193] (imputed)	N
592	chr6_mcf_hap5	963987	963988	rs3116813	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p22.1	NR	rs3116813-A	0.1026	6E-7	(EA)	0.0553	[0.034-0.077] unit decrease	Illumina [~ 11800000] (imputed)	N
592	chr6_mcf_hap5	964110	964111	rs3116812	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8 on Central Memory CD8+ T cell	2,910 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p22.1		rs3116812-G	0.2977	1E-8		0.1871	[0.12-0.25] unit decrease	Illumina [17945467] (imputed)	N
592	chr6_mcf_hap5	967059	967060	rs3131888	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	1,505 Ashkenazi Jewish founder cases, 2,553 Ashkenazi Jewish founder controls	NA	6p22.1	NR	rs3131888-C	NR	7E-6		1.2820514	[NR]	Illumina [up to 9792010] (imputed)	N
592	chr6_mcf_hap5	968531	968532	rs7764829	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p22.1		rs7764829-A	0.612	4E-25				Affymetrix [10369434] (imputed)	N
592	chr6_mcf_hap5	968881	968882	rs9278250	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6p22.1		rs9278250-C	0.247045	7E-12		0.019422151	[0.014-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
592	chr6_mcf_hap5	972108	972108	rs143539749	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	ZDHHC20P1	rs143539749-ATATATATTC	NR	3E-9		0.0217332	[0.015-0.029] unit decrease	Affymetrix [323858] (imputed)	N
592	chr6_mcf_hap5	972108	972108	rs143539749	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	ZDHHC20P1	rs143539749-ATATATATTC	NR	6E-9		0.0213619	[0.014-0.029] unit decrease	Affymetrix [127266] (imputed)	N
592	chr6_mcf_hap5	972158	972159	rs3116800	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	ZDHHC20P1	rs3116800-T	NR	2E-8		0.01833	[0.012-0.025] unit increase	Affymetrix [321016] (imputed)	N
592	chr6_mcf_hap5	973425	973426	rs3129055	19664746	Tse KP	2009-08-05	Am J Hum Genet	Genome-wide association study reveals multiple nasopharyngeal carcinoma-associated loci within the HLA region at chromosome 6p21.3.	Nasopharyngeal carcinoma	277 Han Chinese ancestry cases, 285 Han Chinese ancestry controls	635 Han Chinese ancestry cases, 1,640 Han Chinese ancestry controls	6p22.1	HLA-F	rs3129055-G	0.31	7E-11		1.51	[1.34-1.71]	Illumina [480365]	N
592	chr6_mcf_hap5	974194	974195	rs9258116	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p22.1		rs9258116-T	0.714	3E-9				Affymetrix [10369434] (imputed)	N
592	chr6_mcf_hap5	974231	974232	rs113510833	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	6p22.1	HLA-F, ZFP57	rs113510833-T	0.10919500000000004	3E-8		0.028025	[0.018-0.038] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
592	chr6_mcf_hap5	983173	983174	rs1611371	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p22.1		rs1611371-C	0.228	2E-20				Affymetrix [10369434] (imputed)	N
592	chr6_mcf_hap5	989032	989033	rs2517910	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	HLA-F	rs2517910-A	NR	3E-14		0.0214991	[0.016-0.027] unit increase	Affymetrix [321016] (imputed)	N
592	chr6_mcf_hap5	991061	991062	rs9258177	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	HLA-F	rs9258177-A	NR	3E-10		0.0194677	[0.013-0.026] unit decrease	Affymetrix [321016] (imputed)	N
592	chr6_mcf_hap5	991202	991203	rs9258183	33002439	Jin G	2020-10-01	Lancet Oncol	Genetic risk, incident gastric cancer, and healthy lifestyle: a meta-analysis of genome-wide association studies and prospective cohort study.	Gastric cancer	10,254 Han Chinese ancestry cases, 10,914 Han Chinese ancestry controls	NA	6p22.1	NR	rs9258183-A	0.47	1E-5		1.1	NR	Affymetrix, Illumina [6957974] (imputed)	N
592	chr6_mcf_hap5	991552	991553	rs1362126	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal cancer	978 Austrian ancestry colorectal cancer cases, 636 Austrian ancestry advanced colorectal adenoma cases, 4,294 European ancestry controls	NA	6p22.1	Intergenic	rs1362126-?		1E-7		1.3338668	[NR]	Affymetrix [492217] (imputed)	N
592	chr6_mcf_hap5	991552	991553	rs1362126	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal cancer	978 Austrian ancestry cases, 4,294 European ancestry controls	NA	6p22.1	Intergenic	rs1362126-?		3E-7		1.3908206	[NR]	Affymetrix [492217] (imputed)	N
592	chr6_mcf_hap5	992390	992391	rs2072895	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	6p22.1	Intergenic	rs2072895-C	0.5626	5E-9		0.0168	[0.011-0.022] unit increase	Affymetrix, Illumina [10100000] (imputed)	N
592	chr6_mcf_hap5	993155	993156	rs2072899	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p22.1	NR	rs2072899-?	NR	7E-18		0.1076	[0.083-0.132] unit increase	Illumina [at least 560000] (imputed)	N
592	chr6_mcf_hap5	1009442	1009443	rs374787445	31577861	Dai J	2019-10-31	Int J Cancer	Genome-wide association study of INDELs identified four novel susceptibility loci associated with lung cancer risk.	Lung cancer	20,871 European ancestry cases, 15,971 European ancestry controls, 2,331 Chinese ancestry cases, 3,077 Chinese ancestry controls	NA	6p22.1	HLA-F, AS1	rs374787445-D	0.18	7E-9		1.11	[1.07-1.15]	Illumina [484196]	N
592	chr6_mcf_hap5	1012788	1012789	rs9258224	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	HLA-F-AS1, MICE	rs9258224-A	NR	2E-8		0.0282221	[0.018-0.038] unit decrease	Affymetrix [321016] (imputed)	N
592	chr6_mcf_hap5	1023689	1023690	rs9258260	22412388	Kenny EE	2012-03-08	PLoS Genet	A genome-wide scan of Ashkenazi Jewish Crohn's disease suggests novel susceptibility loci.	Crohn's disease	737 Ashkenazi Jewish cases, 2,257  Ashkenazi Jewish controls	971 Ashkenazi Jewish cases, 2,124 Ashkenazi Jewish controls	6p22.1	UBD, HLA-A, HLA-G, HLA-F, MOG, GABBR1, HLA-H	rs9258260-T	0.104	2E-10		1.45	[1.21-1.68]	Affymetrix, Illumina [1060934] (imputed)	N
592	chr6_mcf_hap5	1026527	1026528	rs1633063	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Sleep duration	384,317 European ancestry individuals	NA	6p22.1		rs1633063-T	0.246	3E-9		0.01681	[0.011-0.022] unit decrease	Affymetrix, Illumina [10862567] (imputed)	N
592	chr6_mcf_hap5	1030663	1030664	rs1610633	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p22.1		rs1610633-G	0.752	5E-94				Affymetrix [10369434] (imputed)	N
592	chr6_mcf_hap5	1031326	1031327	rs1611284	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p22.1	XXbac-BPG170G13.31	rs1611284-G	NR	2E-9		0.0170381	[0.011-0.023] unit decrease	Affymetrix [319769] (imputed)	N
592	chr6_mcf_hap5	1031326	1031327	rs1611284	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p22.1	XXbac-BPG170G13.31	rs1611284-G	NR	2E-8		0.015981	[0.01-0.022] unit decrease	Affymetrix [319769] (imputed)	N
592	chr6_mcf_hap5	1033073	1033074	rs1737062	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p22.1		rs1737062-C	0.472	8E-23				Affymetrix [10369434] (imputed)	N
592	chr6_mcf_hap5	1035401	1035402	rs35794939	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antithrombotic agents)	67,653 European ancestry cases, 85,986 European ancestry controls, 54,220 East Asian ancestry cases, 124,506 East Asian ancestry controls	NA	6p22.1		rs35794939-G	NR	2E-11		0.086	[0.061-0.111] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
592	chr6_mcf_hap5	1036021	1036022	rs115635848	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	XXbac-BPG170G13.31	rs115635848-A	NR	9E-11		0.0221196	[0.015-0.029] unit decrease	Affymetrix [323858] (imputed)	N
592	chr6_mcf_hap5	1036021	1036022	rs115635848	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	XXbac-BPG170G13.31	rs115635848-A	NR	8E-11		0.0222067	[0.016-0.029] unit decrease	Affymetrix [127266] (imputed)	N
592	chr6_mcf_hap5	1036268	1036269	rs28986310	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	6p22.1	NR	rs28986310-T	0.0618266	2E-8		5.66	z score increase	NR [10847151] (imputed)	N
592	chr6_mcf_hap5	1036268	1036269	rs28986310	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	6p22.1	intergenic	rs28986310-T	0.061827	1E-7		5.292	z score increase	Illumina [18485882] (imputed)	N
592	chr6_mcf_hap5	1038033	1038034	rs1737030	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mononucleosis	17,457 European ancestry cases, 68,446 European ancestry controls	NA	6p22.1	NR	rs1737030-?	NR	8E-7		0.0636	[0.038-0.089] unit decrease	Illumina [at least 560000] (imputed)	N
592	chr6_mcf_hap5	1039151	1039152	rs1815741	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Non-small cell lung cancer	27,120 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	6p22.1	NR	rs1815741-C	0.92	3E-7		0.86	[0.81-0.91]	NR [NR] (imputed)	N
592	chr6_mcf_hap5	1039151	1039152	rs1815741	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Lung adenocarcinoma	15,581 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	6p22.1	NR	rs1815741-C	0.92	2E-7		0.84	[0.78-0.89]	NR [NR] (imputed)	N
592	chr6_mcf_hap5	1039455	1039456	rs3888722	30169916	Sun Y	2018-08-31	J Eur Acad Dermatol Venereol	Investigation of the Predisposing Factor of Pemphigus and its clinical subtype through a Genome-wide association and next generation sequence analysis.	Pemphigus foliaceus	65 Chinese ancestry cases, 844 Chinese ancestry controls	at least 49 Chinese ancestry cases, up to 996 Chinese ancestry controls	6p22.1	NR	rs3888722-?	NR	7E-9		2.74		Illumina [5546030] (imputed)	N
592	chr6_mcf_hap5	1048193	1048194	rs116603789	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p22.1	NR	rs116603789-?	NR	1E-6		0.2936	[0.17-0.41] unit increase	Illumina [at least 560000] (imputed)	N
593	chr6_mcf_hap5	1049149	1049150	rs1611236	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p22.1		rs1611236-A	0.678	4E-29				Affymetrix [10369434] (imputed)	N
593	chr6_mcf_hap5	1049149	1049150	rs1611236	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p22.1		rs1611236-A	0.678	6E-22				Affymetrix [10369434] (imputed)	N
593	chr6_mcf_hap5	1049149	1049150	rs1611236	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p22.1		rs1611236-A	0.678	7E-31				Affymetrix [10369434] (imputed)	N
593	chr6_mcf_hap5	1049149	1049150	rs1611236	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p22.1		rs1611236-A	0.678	4E-48				Affymetrix [10369434] (imputed)	N
593	chr6_mcf_hap5	1049149	1049150	rs1611236	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p22.1		rs1611236-A	0.678	8E-38				Affymetrix [10369434] (imputed)	N
593	chr6_mcf_hap5	1049149	1049150	rs1611236	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p22.1		rs1611236-A	0.678	1E-16				Affymetrix [10369434] (imputed)	N
593	chr6_mcf_hap5	1051587	1051588	rs9258357	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p22.1		rs9258357-T	0.163	4E-16				Affymetrix [10369434] (imputed)	N
593	chr6_mcf_hap5	1051587	1051588	rs9258357	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	6p22.1		rs9258357-T	0.163	3E-15				Affymetrix [10369434] (imputed)	N
593	chr6_mcf_hap5	1051587	1051588	rs9258357	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p22.1		rs9258357-T	0.163	3E-10				Affymetrix [10369434] (imputed)	N
593	chr6_mcf_hap5	1053266	1053267	rs9258375	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p22.1	NR	rs9258375-G	0.122	1E-12		0.0131	[0.0094-0.0168] unit decrease	NR [7666894] (imputed)	N
593	chr6_mcf_hap5	1053266	1053267	rs9258375	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA	6p22.1	NR	rs9258375-?	NR	8E-6		0.0571	[0.032-0.082] unit decrease	Illumina [at least 560000] (imputed)	N
593	chr6_mcf_hap5	1054851	1054852	rs114802991	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	6p22.1	HLA-G	rs114802991-G	0.993211	8E-9		0.072933	[0.048-0.098] unit decrease	Affymetrix [NR] (imputed)	N
593	chr6_mcf_hap5	1060334	1060335	rs1611207	32752121	Nedoszytko B	2020-07-31	Int J Mol Sci	Results from a Genome-Wide Association Study (GWAS) in Mastocytosis Reveal New Gene Polymorphisms Associated with WHO Subgroups.	Mastocytosis	234 European ancestry cases, 5,606 European ancestry controls	NA	6p22.1	HLA-V	rs1611207-A	0.3807	3E-13		2.105	[1.9-2.31]	Illumina [281811]	N
593	chr6_mcf_hap5	1060334	1060335	rs1611207	32752121	Nedoszytko B	2020-07-31	Int J Mol Sci	Results from a Genome-Wide Association Study (GWAS) in Mastocytosis Reveal New Gene Polymorphisms Associated with WHO Subgroups.	Cutaneous mastocytosis	141 European ancestry cases, 5,606 European ancestry controls	NA	6p22.1	HLA-V	rs1611207-A	0.3807	1E-8		2.01	[-18.0604-22.0804]	Illumina [281811]	N
593	chr6_mcf_hap5	1060487	1060488	rs45479291	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	229 European ancestry cases, 1,088 European ancestry controls	NA	6p22.1	HLA-V	rs45479291-?	NR	2E-16	(conditional on rs12524487and rs62392216)			Illumina [4388215] (imputed)	N
593	chr6_mcf_hap5	1063360	1063361	rs1737002	32771030	Tangtanatakul P	2020-08-08	Arthritis Res Ther	Meta-analysis of genome-wide association study identifies FBN2 as a novel locus associated with systemic lupus erythematosus in Thai population.	Systemic lupus erythematosus	487 Thai cases, 1,606 Thai controls	405 Thai cases, 1,590 Thai controls	6p22.1	HLA-V	rs1737002-A	0.08	2E-6		1.6334	[NR]	Illumina [421909] (imputed)	N
593	chr6_mcf_hap5	1064751	1064752	rs1633005	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p22.1	HCG4, HLA-G	rs1633005-A	0.282	7E-16				Illumina [118177]	N
593	chr6_mcf_hap5	1065366	1065367	rs2523414	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	6p22.1	NR	rs2523414-?	NR	6E-14		7.508	NR z score increase	Illumina [at least 830937] (imputed)	N
593	chr6_mcf_hap5	1068623	1068624	rs1611185	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	HLA-P	rs1611185-C	NR	2E-9		0.0171984	[0.012-0.023] unit decrease	Affymetrix [321016] (imputed)	N
593	chr6_mcf_hap5	1071900	1071901	rs1610660	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	6p22.1	RPL7AP7	rs1610660-G	0.19782	5E-16		0.036476128	[0.028-0.045] unit decrease	Affymetrix [93095623] (imputed)	N
593	chr6_mcf_hap5	1077955	1077956	rs9380141	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p22.1	HCG4, HLA-G	rs9380141-C	0.29	1E-6	(EA)	1.94	[1.48-2.55]	Illumina [up to 547389]	N
593	chr6_mcf_hap5	1081330	1081331	rs1611182	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	6p22.1	MICG	rs1611182-T	NR	4E-9		0.017276	[0.012-0.023] unit increase	Affymetrix [321788] (imputed)	N
593	chr6_mcf_hap5	1082329	1082330	rs1610707	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	6p22.1	MICG	rs1610707-A	0.359635	1E-13		0.02435493	[0.018-0.031] unit increase	Affymetrix [93095623] (imputed)	N
593	chr6_mcf_hap5	1087050	1087051	rs56221809	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	6p22.1		rs56221809-G	0.863227	8E-9		0.033593	[0.022-0.045] unit decrease	NR [11722792] (imputed)	N
593	chr6_mcf_hap5	1089235	1089236	rs201604542	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p22.1		rs201604542-?	NR	6E-13		0.105892	[0.076-0.135] unit increase	Affymetrix [20259828] (imputed)	N
593	chr6_mcf_hap5	1096963	1096964	rs1632941	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	6p22.1	NR	rs1632941-C	0.46	7E-10	(Conditioned on chr6:28129789)	0.015807396	[0.011-0.021] unit decrease	NR [~ 10000000] (imputed)	N
593	chr6_mcf_hap5	1097321	1097322	rs145023077	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs145023077-?		7E-8		1.06	[1.04-1.09]	Illumina [7645193] (imputed)	N
593	chr6_mcf_hap5	1097321	1097322	rs145023077	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs145023077-?		8E-9		1.83	[1.49-2.25]	Illumina [7645193] (imputed)	N
593	chr6_mcf_hap5	1097698	1097699	rs12722482	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p22.1	NR	rs12722482-?	NR	5E-7		0.0966	[0.059-0.134] unit increase	Illumina [at least 560000] (imputed)	N
593	chr6_mcf_hap5	1099072	1099073	rs9380142	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	6p22.1	HLA-G	rs9380142-G	0.310253	5E-11		0.0409033	[0.029-0.053] unit decrease	Affymetrix [93095623] (imputed)	N
593	chr6_mcf_hap5	1099571	1099572	rs1611141	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	6p22.1	HCG4P8	rs1611141-G	0.499184	2E-24		0.031040031	[0.025-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
593	chr6_mcf_hap5	1100516	1100517	rs12662618	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	6p22.1	HCG4P8	rs12662618-C	0.1014	5E-15		0.04632551	[0.035-0.058] unit increase	Affymetrix [~ 2500000] (imputed)	N
593	chr6_mcf_hap5	1100516	1100517	rs12662618	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	6p22.1	HCG4P8	rs12662618-C	0.1014	5E-16		0.04778197	[0.036-0.059] unit decrease	Affymetrix [~ 2500000] (imputed)	N
593	chr6_mcf_hap5	1100516	1100517	rs12662618	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	6p22.1	HCG4P8	rs12662618-C	0.1015	1E-17		0.05062162	[0.039-0.062] unit decrease	Affymetrix [~ 2500000] (imputed)	N
593	chr6_mcf_hap5	1102995	1102996	rs9380145	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p22.1	NR	rs9380145-C	0.361	2E-21	(IFNAR2_of_CD20p)			Illumina [5084123] (imputed)	N
593	chr6_mcf_hap5	1107204	1107205	rs407238	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p22.1	HLA-G	rs407238-C	NR	4E-9		0.0168935	[0.011-0.023] unit decrease	Affymetrix [319769] (imputed)	N
593	chr6_mcf_hap5	1107204	1107205	rs407238	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p22.1	HLA-G	rs407238-C	NR	2E-8		0.0162062	[0.011-0.022] unit decrease	Affymetrix [319769] (imputed)	N
593	chr6_mcf_hap5	1107204	1107205	rs407238	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	HLA-G	rs407238-C	NR	7E-12		0.0196596	[0.014-0.025] unit increase	Affymetrix [321016] (imputed)	N
593	chr6_mcf_hap5	1107204	1107205	rs407238	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	23,963 European ancestry cases, 306,942 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	43,254 European ancestry cases, 1,471,118 European ancestry controls	6p22.1	HLA-G	rs407238-C	NR	4E-6		0.0336	unit decrease	Illumina [15409056] (imputed)	N
593	chr6_mcf_hap5	1107696	1107697	rs2517887	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	6p22.1	HLA-G	rs2517887-G	0.793716	2E-9		0.0146864	[0.0099-0.0195] unit decrease	Affymetrix [NR] (imputed)	N
593	chr6_mcf_hap5	1110088	1110090	rs34590927	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	6p22.1	NR	rs34590927-?	NR	4E-7		0.062	[0.038-0.086] unit decrease	Illumina [at least 560000] (imputed)	N
593	chr6_mcf_hap5	1110088	1110090	rs34590927	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	6p22.1	HLA-G, HLA-H	rs34590927-?	NR	4E-7		1.0638298	[1.04-1.09]	Illumina [13754664] (imputed)	N
593	chr6_mcf_hap5	1110161	1110162	rs1476570	30529582	Lu Y	2018-12-06	Gastroenterology	Large-scale Genome-wide Association Study of East Asians Identifies Loci Associated With Risk for Colorectal Cancer.	Colorectal cancer	22,775 East Asian ancestry cases, 47,731 East Asian ancestry controls	NA	6p22.1	HLA-G	rs1476570-A	0.376	7E-9		1.12	[1.08-1.16]	Affymetrix, Illumina [up to 10700000] (imputed)	N
593	chr6_mcf_hap5	1113197	1113198	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small LDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	1E-8		0.0338512	[0.022-0.046] unit decrease	NR [11722792] (imputed)	N
593	chr6_mcf_hap5	1113197	1113198	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium LDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	4E-8		0.0327944	[0.021-0.044] unit decrease	NR [11722792] (imputed)	N
593	chr6_mcf_hap5	1113197	1113198	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large LDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	3E-10		0.0370981	[0.026-0.049] unit decrease	NR [11722792] (imputed)	N
593	chr6_mcf_hap5	1113197	1113198	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in LDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	1E-9		0.0361295	[0.024-0.048] unit decrease	NR [11722792] (imputed)	N
593	chr6_mcf_hap5	1113197	1113198	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in IDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	2E-9		0.0345436	[0.023-0.046] unit decrease	NR [11722792] (imputed)	N
593	chr6_mcf_hap5	1113197	1113198	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol minus HDL-C levels	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	5E-10		0.0368197	[0.025-0.048] unit decrease	NR [11722792] (imputed)	N
593	chr6_mcf_hap5	1113197	1113198	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Remnant cholesterol (non-HDL, non-LDL -cholesterol)	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	3E-9		0.0352589	[0.024-0.047] unit decrease	NR [11722792] (imputed)	N
593	chr6_mcf_hap5	1113197	1113198	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium LDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	1E-8		0.0342027	[0.023-0.046] unit decrease	NR [11722792] (imputed)	N
593	chr6_mcf_hap5	1113197	1113198	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large LDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	4E-10		0.0369858	[0.025-0.049] unit decrease	NR [11722792] (imputed)	N
593	chr6_mcf_hap5	1113197	1113198	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in LDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	9E-10		0.036396	[0.025-0.048] unit decrease	NR [11722792] (imputed)	N
593	chr6_mcf_hap5	1113197	1113198	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in IDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	3E-10		0.0361572	[0.025-0.047] unit decrease	NR [11722792] (imputed)	N
593	chr6_mcf_hap5	1113197	1113198	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	LDL cholesterol levels	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	4E-10		0.0370623	[0.025-0.049] unit decrease	NR [11722792] (imputed)	N
593	chr6_mcf_hap5	1113197	1113198	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	5E-9		0.0347629	[0.023-0.046] unit decrease	NR [11722792] (imputed)	N
593	chr6_mcf_hap5	1113197	1113198	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	1E-8		0.0339143	[0.022-0.046] unit decrease	NR [11722792] (imputed)	N
593	chr6_mcf_hap5	1113197	1113198	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	4E-10		0.0372639	[0.026-0.049] unit decrease	NR [11722792] (imputed)	N
593	chr6_mcf_hap5	1113197	1113198	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large LDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	1E-10		0.0378589	[0.026-0.049] unit decrease	NR [11722792] (imputed)	N
593	chr6_mcf_hap5	1113197	1113198	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in LDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	1E-10		0.0379624	[0.026-0.05] unit decrease	NR [11722792] (imputed)	N
593	chr6_mcf_hap5	1113197	1113198	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small LDL particles	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	3E-8		0.0330855	[0.021-0.045] unit decrease	NR [11722792] (imputed)	N
593	chr6_mcf_hap5	1113197	1113198	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large LDL particles	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	7E-11		0.038717	[0.027-0.05] unit decrease	NR [11722792] (imputed)	N
593	chr6_mcf_hap5	1113197	1113198	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of LDL particles	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	5E-10		0.0371209	[0.025-0.049] unit decrease	NR [11722792] (imputed)	N
593	chr6_mcf_hap5	1113197	1113198	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Clinical LDL cholesterol levels	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	2E-10		0.0378905	[0.026-0.05] unit decrease	NR [11722792] (imputed)	N
593	chr6_mcf_hap5	1113197	1113198	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small LDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	2E-8		0.033257	[0.022-0.045] unit decrease	NR [11722792] (imputed)	N
593	chr6_mcf_hap5	1113197	1113198	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium VLDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	1E-11		0.0401155	[0.029-0.052] unit decrease	NR [11722792] (imputed)	N
593	chr6_mcf_hap5	1113197	1113198	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large LDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	2E-10		0.0376083	[0.026-0.049] unit decrease	NR [11722792] (imputed)	N
593	chr6_mcf_hap5	1113197	1113198	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in VLDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	4E-8		0.0327951	[0.021-0.044] unit decrease	NR [11722792] (imputed)	N
593	chr6_mcf_hap5	1113197	1113198	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in LDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	1E-9		0.0361619	[0.025-0.048] unit decrease	NR [11722792] (imputed)	N
593	chr6_mcf_hap5	1113197	1113198	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in IDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	3E-9		0.0342481	[0.023-0.046] unit decrease	NR [11722792] (imputed)	N
593	chr6_mcf_hap5	1113197	1113198	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	1E-8		0.0330288	[0.022-0.044] unit decrease	NR [11722792] (imputed)	N
593	chr6_mcf_hap5	1113197	1113198	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small LDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	4E-9		0.0352069	[0.024-0.047] unit decrease	NR [11722792] (imputed)	N
593	chr6_mcf_hap5	1113197	1113198	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	8E-11		0.0386497	[0.027-0.05] unit decrease	NR [11722792] (imputed)	N
593	chr6_mcf_hap5	1113197	1113198	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	2E-8		0.0333427	[0.022-0.045] unit decrease	NR [11722792] (imputed)	N
593	chr6_mcf_hap5	1113197	1113198	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large LDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	1E-10		0.0379659	[0.026-0.05] unit decrease	NR [11722792] (imputed)	N
593	chr6_mcf_hap5	1113197	1113198	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in IDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	2E-9		0.0344785	[0.023-0.046] unit decrease	NR [11722792] (imputed)	N
593	chr6_mcf_hap5	1113197	1113198	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein B levels	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	9E-10		0.0364076	[0.025-0.048] unit decrease	NR [11722792] (imputed)	N
593	chr6_mcf_hap5	1116351	1116352	rs2394186	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	6p22.1	NR	rs2394186-G	0.2192	2E-8		0.0271	[0.018-0.037] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
593	chr6_mcf_hap5	1116472	1116473	rs28724990	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total free cholesterol levels	115,082 European ancestry individuals	NA	6p22.1		rs28724990-T	0.844316	4E-9		0.0325566	[0.022-0.043] unit decrease	NR [11722792] (imputed)	N
593	chr6_mcf_hap5	1116472	1116473	rs28724990	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total esterified cholesterol levels	115,082 European ancestry individuals	NA	6p22.1		rs28724990-T	0.844316	2E-8		0.0309173	[0.02-0.042] unit decrease	NR [11722792] (imputed)	N
593	chr6_mcf_hap5	1116472	1116473	rs28724990	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol levels	115,082 European ancestry individuals	NA	6p22.1		rs28724990-T	0.844316	1E-8		0.031549	[0.021-0.042] unit decrease	NR [11722792] (imputed)	N
593	chr6_mcf_hap5	1117765	1117765	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	2E-12		0.0298616	[0.022-0.038] unit increase	NR [11722792] (imputed)	N
593	chr6_mcf_hap5	1117765	1117765	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	2E-12		0.0298616	[0.022-0.038] unit increase	NR [11722792] (imputed)	N
593	chr6_mcf_hap5	1117765	1117765	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	1E-13		0.0318981	[0.023-0.04] unit increase	NR [11722792] (imputed)	N
593	chr6_mcf_hap5	1117765	1117765	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	1E-13		0.0318981	[0.023-0.04] unit increase	NR [11722792] (imputed)	N
593	chr6_mcf_hap5	1117765	1117765	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	2E-11		0.0287582	[0.02-0.037] unit increase	NR [11722792] (imputed)	N
593	chr6_mcf_hap5	1117765	1117765	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	2E-11		0.0287582	[0.02-0.037] unit increase	NR [11722792] (imputed)	N
593	chr6_mcf_hap5	1117765	1117765	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	6E-12		0.0290211	[0.021-0.037] unit increase	NR [11722792] (imputed)	N
593	chr6_mcf_hap5	1117765	1117765	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	6E-12		0.0290211	[0.021-0.037] unit increase	NR [11722792] (imputed)	N
593	chr6_mcf_hap5	1117765	1117765	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of apolipoprotein B to apolipoprotein A1 levels	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	9E-12		0.0295387	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
593	chr6_mcf_hap5	1117765	1117765	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of apolipoprotein B to apolipoprotein A1 levels	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	9E-12		0.0295387	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
593	chr6_mcf_hap5	1117765	1117765	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	2E-12		0.0296171	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
593	chr6_mcf_hap5	1117765	1117765	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	2E-12		0.0296171	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
593	chr6_mcf_hap5	1117765	1117765	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	9E-11		0.0275259	[0.019-0.036] unit increase	NR [11722792] (imputed)	N
593	chr6_mcf_hap5	1117765	1117765	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	9E-11		0.0275259	[0.019-0.036] unit increase	NR [11722792] (imputed)	N
593	chr6_mcf_hap5	1117765	1117765	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	2E-13		0.0307478	[0.023-0.039] unit decrease	NR [11722792] (imputed)	N
593	chr6_mcf_hap5	1117765	1117765	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	2E-13		0.0307478	[0.023-0.039] unit decrease	NR [11722792] (imputed)	N
593	chr6_mcf_hap5	1117765	1117765	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	2E-9		0.0253353	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
593	chr6_mcf_hap5	1117765	1117765	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	2E-9		0.0253353	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
593	chr6_mcf_hap5	1117765	1117765	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small LDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	5E-12		0.0303335	[0.022-0.039] unit decrease	NR [11722792] (imputed)	N
593	chr6_mcf_hap5	1117765	1117765	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small LDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	5E-12		0.0303335	[0.022-0.039] unit decrease	NR [11722792] (imputed)	N
593	chr6_mcf_hap5	1117765	1117765	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in IDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	2E-9		0.0257238	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
593	chr6_mcf_hap5	1117765	1117765	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in IDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	2E-9		0.0257238	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
593	chr6_mcf_hap5	1117765	1117765	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of IDL particles	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	7E-10		0.0268846	[0.018-0.035] unit decrease	NR [11722792] (imputed)	N
593	chr6_mcf_hap5	1117765	1117765	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of IDL particles	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	7E-10		0.0268846	[0.018-0.035] unit decrease	NR [11722792] (imputed)	N
593	chr6_mcf_hap5	1117765	1117765	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	4E-12		0.0285378	[0.02-0.037] unit decrease	NR [11722792] (imputed)	N
593	chr6_mcf_hap5	1117765	1117765	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	4E-12		0.0285378	[0.02-0.037] unit decrease	NR [11722792] (imputed)	N
593	chr6_mcf_hap5	1117765	1117765	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	4E-13		0.0301476	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
593	chr6_mcf_hap5	1117765	1117765	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	4E-13		0.0301476	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
593	chr6_mcf_hap5	1118095	1118096	rs28728979	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	MICF	rs28728979-A	NR	3E-8		0.0362437	[0.023-0.049] unit decrease	Affymetrix [321016] (imputed)	N
593	chr6_mcf_hap5	1118656	1118657	rs2523761	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	NR	rs2523761-?	NR	6E-8		5.432	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
593	chr6_mcf_hap5	1119850	1119851	rs9258593	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6p22.1		rs9258593-?	NR	9E-6		1.05543	[1.03-1.08]	NR [685523]	N
593	chr6_mcf_hap5	1121591	1121592	rs17179234	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MRPL55	5,367 Icelandic ancestry individuals	NA	6p22.1		rs17179234-A	0.1077	3E-55		0.466688	[0.41-0.53] unit increase	Illumina [7506463] (imputed)	N
593	chr6_mcf_hap5	1121857	1121858	rs17185657	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	6p22.1	MICF	rs17185657-T	0.076717	2E-15		0.032850858	[0.025-0.041] unit increase	Affymetrix [93095623] (imputed)	N
593	chr6_mcf_hap5	1122333	1122334	rs9258644	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p22.1		rs9258644-?	NR	3E-17		0.0268138	[0.021-0.033] unit decrease	Affymetrix [20259828] (imputed)	N
593	chr6_mcf_hap5	1122683	1122684	rs58005484	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	6p22.1	MICF	rs58005484-T	0.140864	8E-28		0.035311565	[0.029-0.042] unit increase	Affymetrix [93095623] (imputed)	N
593	chr6_mcf_hap5	1122683	1122684	rs58005484	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	6p22.1	MICF	rs58005484-T	0.140853	1E-24		0.033428524	[0.027-0.04] unit decrease	Affymetrix [93095623] (imputed)	N
593	chr6_mcf_hap5	1122683	1122684	rs58005484	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	6p22.1	MICF	rs58005484-T	0.1409	2E-20		0.04769708	[0.038-0.058] unit increase	Affymetrix [~ 2500000] (imputed)	N
593	chr6_mcf_hap5	1128898	1128899	rs2523822	21570397	Lucena MI	2011-04-12	Gastroenterology	Susceptibility to amoxicillin-clavulanate-induced liver injury is influenced by multiple HLA class I and II alleles.	Drug-induced liver injury (amoxicillin-clavulanate)	201 European ancestry cases, 532 European ancestry controls	NA	6p22.1	HLA-A	rs2523822-?	NR	2E-10		2.3	[1.80-2.90]	Illumina [822927]	N
593	chr6_mcf_hap5	1129210	1129211	rs9258750	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6p22.1		rs9258750-G	0.176259	2E-14		0.023563657	[0.018-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
593	chr6_mcf_hap5	1129489	1129490	rs1611713	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p22.1		rs1611713-A	0.712	2E-64				Affymetrix [10369434] (imputed)	N
593	chr6_mcf_hap5	1129874	1129875	rs1611719	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	6p22.1	HLA-G	rs1611719-G	0.79027	5E-13		0.0174799	[0.013-0.022] unit increase	Affymetrix [NR] (imputed)	N
593	chr6_mcf_hap5	1129874	1129875	rs1611719	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	6p22.1	HLA-G	rs1611719-G	0.790195	1E-14		0.019154	[0.014-0.024] unit increase	Affymetrix [NR] (imputed)	N
593	chr6_mcf_hap5	1132573	1132574	rs2524035	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	6p22.1	intergenic	rs2524035-G	0.8188	3E-23		0.04626543	[0.037-0.055] unit decrease	Affymetrix [~ 2500000] (imputed)	N
593	chr6_mcf_hap5	1132936	1132937	rs1611747	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small LDL	115,082 European ancestry individuals	NA	6p22.1		rs1611747-T	0.604397	4E-10		0.0262493	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
593	chr6_mcf_hap5	1132936	1132937	rs1611747	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p22.1		rs1611747-T	0.604	9E-22				Affymetrix [10369434] (imputed)	N
593	chr6_mcf_hap5	1133087	1133088	rs2517827	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	MICF	rs2517827-A	NR	2E-10		0.0215463	[0.015-0.028] unit decrease	Affymetrix [323858] (imputed)	N
593	chr6_mcf_hap5	1133087	1133088	rs2517827	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	MICF	rs2517827-A	NR	8E-11		0.0219247	[0.015-0.029] unit decrease	Affymetrix [127266] (imputed)	N
593	chr6_mcf_hap5	1133233	1133234	rs34832458	31577861	Dai J	2019-10-31	Int J Cancer	Genome-wide association study of INDELs identified four novel susceptibility loci associated with lung cancer risk.	Lung cancer	20,871 European ancestry cases, 15,971 European ancestry controls, 2,331 Chinese ancestry cases, 3,077 Chinese ancestry controls	NA	6p22.1	HLA-G	rs34832458-T	0.39	1E-9		0.92	[0.89-0.94]	Illumina [484196]	N
593	chr6_mcf_hap5	1133297	1133298	rs3128900	33269293	Kannambath S	2020-10-16	Open Forum Infect Dis	Genome-Wide Association Study Identifies Novel Colony Stimulating Factor 1 Locus Conferring Susceptibility to Cryptococcosis in Human Immunodeficiency Virus-Infected South Africans.	Cryptococcosis in HIV infection	319 South African ancestry cases, 399 South African ancestry controls	NA	6p22.1	HLA-H	rs3128900-?	NR	5E-6		0.9658	[NR]	Illumina [2686126] (imputed)	N
593	chr6_mcf_hap5	1133297	1133298	rs3128900	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6p22.1		rs3128900-T	0.845434	2E-21		0.032471824	[0.026-0.039] unit decrease	Affymetrix [93095623] (imputed)	N
593	chr6_mcf_hap5	1133712	1133713	rs7760545	33574277	Kawai Y	2021-02-11	NPJ Genom Med	Mapping of susceptible variants for cold medicine-related Stevens-Johnson syndrome by whole-genome resequencing.	Cold medicine-related Stevens-Johnson syndrome/toxic epidermal necrolysis (SJS/TEN) with severe ocular complications	133 Japanese ancestry cases, 418 Japanese ancestry controls	NA	6p22.1		rs7760545-A	0.2594	4E-16		4.373		Illumina [7608150]	N
593	chr6_mcf_hap5	1136977	1136978	rs1611637	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	IgM levels	14,442 Icelandic ancestry individuals	2,157 Swedish ancestry individuals	6p22.1	HLA-G	rs1611637-A	0.4554	1E-21		0.11	NR SD units increase	Illumina [21568490] (imputed)	N
593	chr6_mcf_hap5	1137743	1137744	rs885932	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p22.1	NR	rs885932-A	0.190644	2E-12		0.026577342	[0.019-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
593	chr6_mcf_hap5	1140478	1140479	rs2523815	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p22.1	HLA-A	rs2523815-A	0.64	2E-22		1.12	[1.11-1.14]	Illumina [at least 560000] (imputed)	N
593	chr6_mcf_hap5	1140973	1140974	rs3132713	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	6p22.1		rs3132713-A	0.181	2E-27				Affymetrix [10369434] (imputed)	N
593	chr6_mcf_hap5	1141450	1141451	rs56213322	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	6p22.1		rs56213322-A	0.819527	5E-23		0.029193865	[0.023-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
593	chr6_mcf_hap5	1142774	1142775	rs2734963	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Oral cavity and pharyngeal cancer	1,223 European ancestry cases, 410,350 European ancestry controls	NA	6p22.1		rs2734963-T	0.193283	6E-7		1.2753475	NR	Affymetrix [7846216] (imputed)	N
593	chr6_mcf_hap5	1144168	1144169	rs3094650	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	6p22.1	NR	rs3094650-C	0.722493	3E-16		0.023382017	[0.018-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
593	chr6_mcf_hap5	1144168	1144169	rs3094650	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6p22.1	NR	rs3094650-C	0.72248	3E-29		0.031621024	[0.026-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
593	chr6_mcf_hap5	1144168	1144169	rs3094650	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	6p22.1		rs3094650-C	0.722504	9E-32		0.032617964	[0.027-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
593	chr6_mcf_hap5	1144256	1144257	rs2523809	22075330	Granada M	2011-11-08	J Allergy Clin Immunol	A genome-wide association study of plasma total IgE concentrations in the Framingham Heart Study.	IgE levels	6,819 European ancestry individuals	7,809 European ancestry indivduals	6p22.1	HLA-G	rs2523809-T	NR	4E-8		0.06	[NR] unit increase	Affymetrix [2540223] (imputed)	N
593	chr6_mcf_hap5	1145371	1145372	rs1611579	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6p22.1	HLA-H	rs1611579-C	0.122264	4E-17		0.051560964	[0.04-0.064] unit increase	Affymetrix [93095623] (imputed)	N
593	chr6_mcf_hap5	1145371	1145372	rs1611579	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p22.1	NR	rs1611579-C	0.098	8E-7	(EA)	0.058	[0.035-0.081] unit decrease	Illumina [~ 11800000] (imputed)	N
593	chr6_mcf_hap5	1145478	1145479	rs1611581	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	6p22.1	NR	rs1611581-C	0.682015	5E-8		0.0185265	[0.012-0.025] unit increase	Affymetrix [16577424] (imputed)	N
593	chr6_mcf_hap5	1148090	1148091	rs2523802	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	6p22.1	NR	rs2523802-?	NR	2E-8		0.088	[0.057-0.119] unit decrease	Illumina [at least 560000] (imputed)	N
593	chr6_mcf_hap5	1149222	1149223	rs2734950	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	6p22.1	HLA-H	rs2734950-T	0.402539	6E-12		0.01625928	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
593	chr6_mcf_hap5	1167057	1167058	rs189370103	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	6p22.1	NR	rs189370103-?	NR	8E-6	(Native Hawaiian)	1.0607	[NR] unit increase	Illumina [up to 11892802] (imputed)	N
593	chr6_mcf_hap5	1170629	1170630	rs2517873	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Squamous cell lung carcinoma	8,350 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	6p22.1	NR	rs2517873-A	NR	2E-10		1.23	[1.15-1.31]	NR [NR] (imputed)	N
593	chr6_mcf_hap5	1170629	1170630	rs2517873	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Non-small cell lung cancer	27,120 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	6p22.1	NR	rs2517873-A	NR	5E-11		1.16	[1.11-1.21]	NR [NR] (imputed)	N
593	chr6_mcf_hap5	1170629	1170630	rs2517873	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Lung adenocarcinoma	15,581 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	6p22.1	NR	rs2517873-A	NR	3E-6		1.13	[1.08-1.20]	NR [NR] (imputed)	N
593	chr6_mcf_hap5	1170629	1170630	rs2517873	31326317	Dai J	2019-07-17	Lancet Respir Med	Identification of risk loci and a polygenic risk score for lung cancer: a large-scale prospective cohort study in Chinese populations.	Non-small cell lung cancer	13,327 Chinese ancestry cases, 13,793 European ancestry cases, 13,328 Chinese ancestry controls, 14,027 European ancestry controls	NA	6p22.1	MHC	rs2517873-A	0.145	5E-11		1.16	[1.11-1.21]	Illumina [~ 11000000] (imputed)	N
594	chr6_mcf_hap5	1295788	1295789	rs34941730	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p22.1	HLA-A	rs34941730-G	0.119	2E-9		0.102	[0.069-0.135] unit decrease	Affymetrix, Illumina [7374092] (imputed)	N
594	chr6_mcf_hap5	1296435	1296436	rs376253	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6p22.1	HLA-A	rs376253-A	NR	3E-10		0.0221166	[0.015-0.029] unit decrease	Affymetrix [321114] (imputed)	N
594	chr6_mcf_hap5	1296675	1296676	rs17179564	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	82,810 East Asian ancestry individuals	NA	6p22.1		rs17179564-A	0.36573	6E-10		0.0301926	[0.021-0.04] unit increase	Illumina [13467171] (imputed)	N
594	chr6_mcf_hap5	1296730	1296731	rs2735099	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p22.1	NR	rs2735099-T	0.417	3E-26	(IFNAR2_of_CD20p)			Illumina [5084123] (imputed)	N
594	chr6_mcf_hap5	1296963	1296964	rs2248162	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	HLA-A	rs2248162-T	NR	3E-8		0.0179351	[0.012-0.024] unit decrease	Affymetrix [323858] (imputed)	N
594	chr6_mcf_hap5	1297789	1297790	rs2517720	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6p22.1	HLA-A	rs2517720-C	0.555569	1E-14		0.022822132	[0.017-0.029] unit increase	Affymetrix [93095623] (imputed)	N
594	chr6_mcf_hap5	1298704	1298705	rs1655901	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	6p22.1	HLA-A	rs1655901-C	0.557583	3E-22		0.02534704	[0.02-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
594	chr6_mcf_hap5	1298785	1298786	rs9260313	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p22.1	HLA-A	rs9260313-C		5E-24		0.02	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
594	chr6_mcf_hap5	1298785	1298786	rs9260313	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	6p22.1	HLA-A	rs9260313-C	0.2875	1E-15		0.03200038	[0.024-0.04] unit increase	Affymetrix [~ 2500000] (imputed)	N
594	chr6_mcf_hap5	1298785	1298786	rs9260313	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	6p22.1	HLA-A	rs9260313-C	0.2876	1E-15		0.03178619	[0.024-0.04] unit increase	Affymetrix [~ 2500000] (imputed)	N
594	chr6_mcf_hap5	1300011	1300012	rs2517713	19664746	Tse KP	2009-08-05	Am J Hum Genet	Genome-wide association study reveals multiple nasopharyngeal carcinoma-associated loci within the HLA region at chromosome 6p21.3.	Nasopharyngeal carcinoma	277 Han Chinese ancestry cases, 285 Han Chinese ancestry controls	635 Han Chinese ancestry cases, 1,640 Han Chinese ancestry controls	6p22.1	HLA-A	rs2517713-A	0.62	4E-20		1.88	[1.65-2.15]	Illumina [480365]	N
594	chr6_mcf_hap5	1301022	1301023	rs9260426	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p22.1		rs9260426-?	NR	6E-27		0.0229231	[0.019-0.027] unit increase	Affymetrix [20259828] (imputed)	N
594	chr6_mcf_hap5	1301022	1301023	rs9260426	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	6p22.1	HLA-A	rs9260426-A	0.498682	2E-8	(women)	0.0236393	[0.015-0.033] unit increase	NR [17166351] (imputed)	N
594	chr6_mcf_hap5	1301022	1301023	rs9260426	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	6p22.1	HLA-A	rs9260426-A	0.498488	3E-11		0.020854	[0.014-0.027] unit increase	NR [17166351] (imputed)	N
594	chr6_mcf_hap5	1301692	1301693	rs7747253	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	6p22.1	HLA-A	rs7747253-C	0.499099	1E-33		0.022146	[0.019-0.026] unit increase	NR [13737936] (imputed)	N
594	chr6_mcf_hap5	1302245	1302246	rs9260489	23417110	Tin A	2013-02-16	Hum Genet	Genome-wide association study identified the human leukocyte antigen region as a novel locus for plasma beta-2 microglobulin.	Beta-2 microglubulin plasma levels	6,728 European ancestry individuals		6p22.1	HLA-A	rs9260489-G	0.58	2E-22		0.04	[0.032-0.048] unit decrease	Affymetrix [2500000] (imputed)	N
594	chr6_mcf_hap5	1302245	1302246	rs9260489	22190364	Patsopoulos NA	2011-12-01	Ann Neurol	Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.	Multiple sclerosis	5,545 European ancestry cases, 12,153 European ancestry controls	NA	6p22.1	HLA-B	rs9260489-T	0.45	1E-11		1.21	[NR]	Affymetrix, Illumina [2529394]	N
594	chr6_mcf_hap5	1302334	1302335	rs9260492	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p22.1		rs9260492-T	0.5	3E-19				Affymetrix [10369434] (imputed)	N
594	chr6_mcf_hap5	1302620	1302621	rs9260500	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p22.1		rs9260500-T	0.5	2E-56				Affymetrix [10369434] (imputed)	N
594	chr6_mcf_hap5	1302949	1302950	rs28749167	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	286 European ancestry cases, 2,652 European ancestry controls, 76 Han Chinese ancestry cases, 889 Han Chinese ancestry controls, 46 South Asian ancestry cases, 501 South Asian ancestry controls, 683 Turkish ancestry cases, 1,721 Turkish ancestry controls	NA	6p22.1	HLA-G	rs28749167-?	NR	2E-9	(conditional on rs2844678, rs12524487, rs17193507 and rs12526858)	1.43	NR	Illumina [up to 4495750] (imputed)	N
594	chr6_mcf_hap5	1303088	1303089	rs9260526	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (underestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	6p22.1	NR	rs9260526-?	NR	5E-9		5.864	NR z score increase	Illumina [at least 830937] (imputed)	N
594	chr6_mcf_hap5	1303375	1303376	rs137886986	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6p22.1	HLA-W	rs137886986-A	0.09576	8E-24		0.039658234	[0.032-0.047] unit increase	Affymetrix [93095623] (imputed)	N
594	chr6_mcf_hap5	1304564	1304565	rs28780071	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	Intrinsic epigenetic age acceleration	34,461 European ancestry individuals	NA	6p22.1	NR	rs28780071-T	0.3313	4E-9		0.2035	[0.14-0.27] unit increase	Affymetrix, Illumina [7567980] (imputed)	N
594	chr6_mcf_hap5	1304637	1304638	rs16896742	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NPTX1	5,365 Icelandic ancestry individuals	NA	6p22.1		rs16896742-G	0.4238	6E-28		0.206363	[0.17-0.24] unit decrease	Illumina [7506463] (imputed)	N
594	chr6_mcf_hap5	1304637	1304638	rs16896742	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	6p22.1	HLA-A	rs16896742-G	0.38	3E-10		0.04	[0.028-0.052] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
594	chr6_mcf_hap5	1304651	1304652	rs9260603	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p22.1	HLA-W	rs9260603-T	NR	2E-8		0.0159518	[0.01-0.021] unit increase	Affymetrix [319769] (imputed)	N
594	chr6_mcf_hap5	1304651	1304652	rs9260603	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p22.1	HLA-W	rs9260603-T	NR	4E-8		0.0156092	[0.01-0.021] unit increase	Affymetrix [319769] (imputed)	N
594	chr6_mcf_hap5	1304977	1304978	rs9260619	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p22.1	NR	rs9260619-?	NR	3E-11		0.2395	[0.17-0.31] unit increase	Illumina [at least 560000] (imputed)	N
594	chr6_mcf_hap5	1304982	1304983	rs9260620	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	6p22.1	HLA-W	rs9260620-G	0.3359	2E-74		0.06971236	[0.062-0.077] unit decrease	Affymetrix [~ 2500000] (imputed)	N
594	chr6_mcf_hap5	1304982	1304983	rs9260620	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	6p22.1	HLA-W	rs9260620-G	0.3358	2E-44		0.05337227	[0.046-0.061] unit decrease	Affymetrix [~ 2500000] (imputed)	N
594	chr6_mcf_hap5	1304982	1304983	rs9260620	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	6p22.1	HLA-W	rs9260620-G	0.3358	4E-40		0.05070884	[0.043-0.058] unit decrease	Affymetrix [~ 2500000] (imputed)	N
594	chr6_mcf_hap5	1304982	1304983	rs9260620	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	6p22.1	HLA-W	rs9260620-G	0.3358	2E-39		0.05008696	[0.043-0.058] unit decrease	Affymetrix [~ 2500000] (imputed)	N
594	chr6_mcf_hap5	1304982	1304983	rs9260620	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	6p22.1	HLA-W	rs9260620-G	0.3358	6E-51		0.05759035	[0.05-0.065] unit decrease	Affymetrix [~ 2500000] (imputed)	N
594	chr6_mcf_hap5	1304982	1304983	rs9260620	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	6p22.1	HLA-W	rs9260620-G	0.3357	4E-53		0.05836372	[0.051-0.066] unit decrease	Affymetrix [~ 2500000] (imputed)	N
594	chr6_mcf_hap5	1304982	1304983	rs9260620	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	6p22.1	HLA-W	rs9260620-G	0.3358	7E-45		0.05377813	[0.046-0.061] unit decrease	Affymetrix [~ 2500000] (imputed)	N
594	chr6_mcf_hap5	1305139	1305140	rs7768235	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p22.1	HLA-W	rs7768235-C	0.514186	1E-16		0.022017317	[0.017-0.027] unit increase	Affymetrix [93095623] (imputed)	N
594	chr6_mcf_hap5	1305139	1305140	rs7768235	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	6p22.1	HLA-W	rs7768235-C	0.514229	5E-14		0.02060967	[0.015-0.026] unit increase	Affymetrix [93095623] (imputed)	N
594	chr6_mcf_hap5	1305139	1305140	rs7768235	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p22.1		rs7768235-?	NR	7E-25		0.0219262	[0.018-0.026] unit increase	Affymetrix [20259828] (imputed)	N
594	chr6_mcf_hap5	1305242	1305243	rs2904758	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	6p22.1	HLA-W	rs2904758-A	0.7187	6E-17		0.03315845	[0.025-0.041] unit decrease	Affymetrix [~ 2500000] (imputed)	N
594	chr6_mcf_hap5	1305314	1305315	rs9260639	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	6p22.1	HLA-W	rs9260639-T	0.1389	2E-14		0.03938988	[0.029-0.05] unit increase	Affymetrix [~ 2500000] (imputed)	N
594	chr6_mcf_hap5	1305394	1305395	rs2571389	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p22.1		rs2571389-T	0.5	1E-30				Affymetrix [10369434] (imputed)	N
594	chr6_mcf_hap5	1305445	1305446	rs2571390	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8 on Effector Memory CD8+ T cell	2,912 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p22.1		rs2571390-C	0.82253	6E-22		0.3643	[0.29-0.44] unit increase	Illumina [17945888] (imputed)	N
594	chr6_mcf_hap5	1305733	1305734	rs2571391	22075330	Granada M	2011-11-08	J Allergy Clin Immunol	A genome-wide association study of plasma total IgE concentrations in the Framingham Heart Study.	IgE levels	6,819 European ancestry individuals	7,809 European ancestry indivduals	6p22.1	HLA-A	rs2571391-C	NR	1E-15		0.06	[NR] unit increase	Affymetrix [2540223] (imputed)	N
594	chr6_mcf_hap5	1306115	1306116	rs2571392	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	6p22.1	HLA-W	rs2571392-A	0.314446	4E-11		0.023026897	[0.016-0.03] unit increase	Affymetrix [93095623] (imputed)	N
594	chr6_mcf_hap5	1306263	1306264	rs2571394	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TAPBPL	5,368 Icelandic ancestry individuals	NA	6p22.1		rs2571394-G	0.3722	1E-15		0.160938	[0.12-0.2] unit decrease	Illumina [7506463] (imputed)	N
594	chr6_mcf_hap5	1306314	1306315	rs17179851	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Gynecologic disease	7,975 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs17179851-?		7E-8		1.11	[1.07-1.15]	Illumina [7645193] (imputed)	N
594	chr6_mcf_hap5	1306314	1306315	rs17179851	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Gynecologic disease	7,315 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs17179851-?		7E-7				Illumina [7645193] (imputed)	N
594	chr6_mcf_hap5	1306416	1306417	rs1808199	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	6p22.1	HLA-W	rs1808199-T	0.092214	4E-22		0.03959165	[0.032-0.048] unit decrease	Affymetrix [93095623] (imputed)	N
594	chr6_mcf_hap5	1306977	1306978	rs114193679	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mumps	31,227 European ancestry cases, 54,153 European ancestry controls	NA	6p22.1	HLA-A	rs114193679-G	0.99	2E-17		1.72	[1.62-1.84]	Illumina [at least 560000] (imputed)	N
594	chr6_mcf_hap5	1307143	1307144	rs17186335	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p22.1	NR	rs17186335-?	NR	3E-8		0.0898	[0.058-0.122] unit decrease	Illumina [at least 560000] (imputed)	N
594	chr6_mcf_hap5	1307753	1307754	rs62392216	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	57 Italian ancestry cases, 931 Italian ancestry controls	NA	6p22.1	HLA-B	rs62392216-?	NR	1E-11				Illumina [4425173] (imputed)	N
594	chr6_mcf_hap5	1307753	1307754	rs62392216	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	229 European ancestry cases, 1,088 European ancestry controls	NA	6p22.1	HLA-G	rs62392216-?	NR	3E-11	(conditional on rs12524487)			Illumina [4388215] (imputed)	N
594	chr6_mcf_hap5	1308238	1308239	rs9260679	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	6p22.1	NR	rs9260679-?	NR	9E-90		20.092	NR z score increase	Illumina [at least 830937] (imputed)	N
594	chr6_mcf_hap5	1308956	1308957	rs2735085	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	HLA-W	rs2735085-A	NR	5E-8		0.0198962	[0.013-0.027] unit decrease	Affymetrix [321016] (imputed)	N
594	chr6_mcf_hap5	1309143	1309144	rs114577328	28043905	Nicoletti P	2016-12-30	Gastroenterology	Association of Liver Injury From Specific Drugs, or Groups of Drugs, With Polymorphisms in HLA and Other Genes in a Genome-Wide Association Study.	Drug-induced liver injury	862 European ancestry cases and 10,588 European ancestry controls	NA	6p22.1	MHC	rs114577328-?	0.01	2E-8		2.7	1.9-3.8	Illumina [505740] (imputed)	N
594	chr6_mcf_hap5	1309583	1309584	rs2571400	34642315	Ferreiro-Iglesias A	2021-10-12	Nat Commun	Germline determinants of humoral immune response to HPV-16 protect against oropharyngeal cancer.	Human papilloma virus 16 positive oropharyngeal cancer	1,078 European ancestry cases, 5,256 European ancestry controls	NA	6p22.1		rs2571400-G	NR	3E-6		1.2905		Illumina [7574753] (imputed)	N
594	chr6_mcf_hap5	1309583	1309584	rs2571400	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	HLA-W	rs2571400-C	NR	5E-8		5.453	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
595	chr6_mcf_hap5	1310935	1310936	rs2517690	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p22.1	NR	rs2517690-?	NR	7E-9				Affymetrix [~ 8270000] (imputed)	N
595	chr6_mcf_hap5	1312796	1312797	rs56262516	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8 on CD28- CD8+ T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p22.1		rs56262516-A	0.27456	1E-11		0.23	[0.16-0.3] unit increase	Illumina [17954496] (imputed)	N
595	chr6_mcf_hap5	1312796	1312797	rs56262516	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8 on CD28+ CD45RA- CD8+ T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p22.1		rs56262516-A	0.27456	7E-13		0.2531	[0.18-0.32] unit increase	Illumina [17954496] (imputed)	N
595	chr6_mcf_hap5	1313202	1313203	rs192543598	31066027	Nicoletti P	2019-05-07	Clin Pharmacol Ther	Shared genetic risk factors across carbamazepine-induced hypersensitivity reactions.	Carbamazepine-induced serious cutaneous adverse reaction	43 European ancestry cases, 10,701 European ancestry controls	NA	6p22.1	NR	rs192543598-G	0.01	2E-12		18.11	[8.03-40.88]	Illumina [5271349] (imputed)	N
595	chr6_mcf_hap5	1313754	1313755	rs2517683	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	6p22.1	HLA-W	rs2517683-C	NR	5E-10		0.0183528	[0.013-0.024] unit decrease	Affymetrix [321788] (imputed)	N
595	chr6_mcf_hap5	1314141	1314142	rs2523933	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	HLA-W	rs2523933-T	NR	2E-9		6.01	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
595	chr6_mcf_hap5	1315076	1315077	rs2517678	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	6p22.1	intergenic	rs2517678-T	0.3811	2E-9		0.02249725	[0.015-0.03] unit increase	Affymetrix [~ 2500000] (imputed)	N
595	chr6_mcf_hap5	1315112	1315113	rs6457109	33574277	Kawai Y	2021-02-11	NPJ Genom Med	Mapping of susceptible variants for cold medicine-related Stevens-Johnson syndrome by whole-genome resequencing.	Cold medicine-related Stevens-Johnson syndrome/toxic epidermal necrolysis (SJS/TEN) with severe ocular complications	133 Japanese ancestry cases, 418 Japanese ancestry controls	NA	6p22.1		rs6457109-C	0.2519	3E-16		4.516		Illumina [7608150]	N
595	chr6_mcf_hap5	1315885	1315886	rs6914699	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	MICD	rs6914699-T	NR	3E-8		5.569	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
595	chr6_mcf_hap5	1316027	1316028	rs6935053	23511034	Yang SK	2013-04-01	Inflamm Bowel Dis	Genome-wide association study of ulcerative colitis in Koreans suggests extensive overlapping of genetic susceptibility with Caucasians.	Ulcerative colitis	388 Korean ancestry cases, 739 Korean ancestry controls	417 Korean ancestry cases, 732 Korean ancestry controls	6p22.1	HCG9	rs6935053-?	NR	2E-6	(Conditioned on rs9271366)			Illumina [581060]	N
595	chr6_mcf_hap5	1317113	1317114	rs3893464	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p22.1		rs3893464-G	0.514	7E-43				Affymetrix [10369434] (imputed)	N
595	chr6_mcf_hap5	1317113	1317114	rs3893464	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	6p22.1	MICD	rs3893464-A	0.4884	7E-54		0.05503962	[0.048-0.062] unit decrease	Affymetrix [~ 2500000] (imputed)	N
595	chr6_mcf_hap5	1317113	1317114	rs3893464	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	6p22.1	MICD	rs3893464-A	0.4883	8E-55		0.05548136	[0.049-0.062] unit decrease	Affymetrix [~ 2500000] (imputed)	N
595	chr6_mcf_hap5	1317113	1317114	rs3893464	21900946	Nakabayashi K	2011-09-08	J Hum Genet	Identification of independent risk loci for Graves' disease within the MHC in the Japanese population.	Graves' disease	1,119 Japanese ancestry cases, 2,718 Japanese ancestry controls	432 Japanese ancestry cases, 1,157 Japanese ancestry controls	6p22.1	MHC	rs3893464-G	0.36	2E-20		1.53	[1.39-1.67]	Perlegen [268068]	N
595	chr6_mcf_hap5	1317268	1317269	rs3893463	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	MICD	rs3893463-T	NR	2E-8		5.65	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
595	chr6_mcf_hap5	1317584	1317585	rs56402621	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	6p22.1	HLA-A, ZNRD1-AS1	rs56402621-T	0.0181	2E-7		0.0330166	[0.021-0.045] unit increase	Affymetrix [11880941] (imputed)	N
595	chr6_mcf_hap5	1318495	1318496	rs9260765	33143745	Andlauer TFM	2020-11-04	BMC Med	Treatment- and population-specific genetic risk factors for anti-drug antibodies against interferon-beta: a GWAS.	Binding antibody response to interferon beta therapy in multiple sclerosis (antibody levels; all treatment preparations)	up to 2,000 German and Swedish ancestry individuals	up to 757 German and Swedish ancestry individuals	6p22.1		rs9260765-C	0.45	5E-11		0.17372645	[0.12-0.23] unit increase	Illumina [8550834] (imputed)	N
595	chr6_mcf_hap5	1319408	1319409	rs1061539	30566020	Fukaya E	2018-12-01	Circulation	Clinical and Genetic Determinants of Varicose Veins.	Varicose veins	9,577 British ancestry cases, 327,959 British ancestry controls	NA	6p22.1	NR	rs1061539-C	0.83	2E-9		0.113	[0.076-0.15] unit decrease	Affymetrix [10972371] (imputed)	N
595	chr6_mcf_hap5	1319634	1319635	rs2523972	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p22.1	MICD	rs2523972-C	NR	1E-11		0.0191491	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
595	chr6_mcf_hap5	1319634	1319635	rs2523972	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p22.1	MICD	rs2523972-C	NR	1E-10		0.0182302	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
595	chr6_mcf_hap5	1319634	1319635	rs2523972	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	MICD	rs2523972-C	NR	1E-12		0.0200168	[0.014-0.026] unit decrease	Affymetrix [321016] (imputed)	N
595	chr6_mcf_hap5	1319774	1319775	rs1061535	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	6p22.1	NR	rs1061535-?	NR	1E-6		0.0535	[0.032-0.075] unit decrease	Illumina [at least 560000] (imputed)	N
595	chr6_mcf_hap5	1319827	1319828	rs2517671	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	6p22.1	HCG9	rs2517671-G	0.419267	3E-22		0.023432834	[0.019-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
595	chr6_mcf_hap5	1320998	1320999	rs2523968	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p22.1	NR	rs2523968-A	0.429	4E-12	(conditional)	1.132	[1.1-1.17]	Illumina [11270530] (imputed)	N
595	chr6_mcf_hap5	1321430	1321431	rs2523961	29784950	Sawai H	2018-05-21	Sci Rep	Genome-wide association study identified new susceptible genetic variants in HLA class I region for hepatitis B virus-related hepatocellular carcinoma.	Hepatocellular carcinoma in hepatitis B infection	473 Japanese ancestry chronic hepatitis and hepatocellular carcinoma cases, 516 Japanese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma	153 Japanese ancestry chronic hepatitis and hepatocellular carcinoma cases, 614 Japanese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma, 94 Chinese ancestry chronic hepatitis and hepatocellular carcinoma cases, 187 Chinese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma, 185 Thai ancestry chronic hepatitis and hepatocellular carcinoma cases, 198 Thai ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma	6p22.1	HLA	rs2523961-?	NR	6E-11		1.91	[1.56-2.37] Japanese	Affymetrix [447830]	N
595	chr6_mcf_hap5	1321430	1321431	rs2523961	29784950	Sawai H	2018-05-21	Sci Rep	Genome-wide association study identified new susceptible genetic variants in HLA class I region for hepatitis B virus-related hepatocellular carcinoma.	Hepatocellular carcinoma in hepatitis B infection	473 Japanese ancestry chronic hepatitis and hepatocellular carcinoma cases, 516 Japanese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma	153 Japanese ancestry chronic hepatitis and hepatocellular carcinoma cases, 614 Japanese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma, 94 Chinese ancestry chronic hepatitis and hepatocellular carcinoma cases, 187 Chinese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma, 185 Thai ancestry chronic hepatitis and hepatocellular carcinoma cases, 198 Thai ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma	6p22.1	HLA	rs2523961-?	NR	6E-10	(Japanese)	1.91	[1.56-2.37]	Affymetrix [447830]	N
595	chr6_mcf_hap5	1323285	1323286	rs9295825	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p22.1	NR	rs9295825-?	NR	3E-18		0.1197	[0.092-0.147] unit increase	Illumina [at least 560000] (imputed)	N
595	chr6_mcf_hap5	1323667	1323668	rs444252	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Strep throat	52,487 European ancestry cases, 22,017 European ancestry controls	NA	6p22.1	NR	rs444252-?	NR	1E-6		0.0267	[0.016-0.037] unit increase	Illumina [at least 560000] (imputed)	N
595	chr6_mcf_hap5	1323797	1323798	rs2523946	32912934	Li M	2020-09-10	J Am Soc Nephrol	Genome-Wide Meta-Analysis Identifies Three Novel Susceptibility Loci and Reveals Ethnic Heterogeneity of Genetic Susceptibility for IgA Nephropathy.	IgA nephropathy	2,628 Chinese ancestry cases, 11,563 Chinese ancestry controls	6,879 Han Chinese ancestry cases, 9,019 Han Chinese ancestry controls, 1,039 Italian ancestry cases, 1,289 Italian ancestry controls	6p22.1	HLA-A	rs2523946-C	0.5077594888869671	2E-8	(East Asian)	1.2170416	[1.13667796674979-1.3030869883916]	NR [3611808] (imputed)	N
595	chr6_mcf_hap5	1323797	1323798	rs2523946	26028593	Li M	2015-06-01	Nat Commun	Identification of new susceptibility loci for IgA nephropathy in Han Chinese.	IgA nephropathy	1,434 Han Chinese ancestry cases, 10,661 Han Chinese ancestry controls	6,879 Han Chinese ancestry cases, 9,019 Han Chinese ancestry controls	6p22.1	NR	rs2523946-C	0.511	5E-11		1.317	[1.217-1.426]	Illumina [3792949] (imputed)	N
595	chr6_mcf_hap5	1323797	1323798	rs2523946	22197929	Yu XQ	2011-12-25	Nat Genet	A genome-wide association study in Han Chinese identifies multiple susceptibility loci for IgA nephropathy.	IgA nephropathy	1,434 Han Chinese ancestry cases, 4,270 Han Chinese ancestry controls	2,703 Han Chinese ancestry cases, 3,464 Han Chinese ancestry controls	6p22.1	HLA-A	rs2523946-C	0.50	2E-11		1.21	[1.15-1.28]	Illumina [444882]	N
595	chr6_mcf_hap5	1323937	1323938	rs3823355	20410501	Jin Y	2010-04-21	N Engl J Med	Variant of TYR and autoimmunity susceptibility loci in generalized vitiligo.	Vitiligo	1,392 European ancestry cases, 2,629 European ancestry controls	647 European ancestry cases, 1,056 European ancestry controls, 183 European ancestry trios, 1,383 European ancestry individuals from 332 families	6p22.1	HLA-A, HCG9	rs3823355-T	0.29	9E-23		1.5	[1.39-1.63]	Illumina [520460]	N
595	chr6_mcf_hap5	1324239	1324240	rs35835721	33574277	Kawai Y	2021-02-11	NPJ Genom Med	Mapping of susceptible variants for cold medicine-related Stevens-Johnson syndrome by whole-genome resequencing.	Cold medicine-related Stevens-Johnson syndrome/toxic epidermal necrolysis (SJS/TEN) with severe ocular complications	133 Japanese ancestry cases, 418 Japanese ancestry controls	NA	6p22.1		rs35835721-G	0.4624	8E-15		3.091		Illumina [7608150]	N
595	chr6_mcf_hap5	1324524	1324525	rs1960063	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	HCG9	rs1960063-A	NR	4E-10		0.0213735	[0.015-0.028] unit decrease	Affymetrix [323858] (imputed)	N
595	chr6_mcf_hap5	1324524	1324525	rs1960063	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	HCG9	rs1960063-A	NR	4E-10		0.0213569	[0.015-0.028] unit decrease	Affymetrix [127266] (imputed)	N
595	chr6_mcf_hap5	1324927	1324928	rs6904029	24939585	Fransen E	2014-06-18	Eur J Hum Genet	Genome-wide association analysis demonstrates the highly polygenic character of age-related hearing impairment.	Age-related hearing impairment	1,489 European ancestry individuals	NA	6p22.1	HLA-A29.1, HCG9	rs6904029-?		3E-6	(PC3)	0.0464	[NR] unit decrease	Illumina [4167292] (imputed)	N
595	chr6_mcf_hap5	1325514	1325515	rs2394250	23749187	Cortes A	2013-07-01	Nat Genet	Identification of multiple risk variants for ankylosing spondylitis through high-density genotyping of immune-related loci.	Ankylosing spondylitis	9,069 European ancestry cases, 1,550 East Asian ancestry cases, 13,578 European ancestry controls, 1,567 East Asian ancestry controls	NA	6p22.1	HLA-A*0201	rs2394250-?	0.421	8E-51	(EA)	1.541		Illumina [128935]	N
595	chr6_mcf_hap5	1325546	1325547	rs2394251	33269293	Kannambath S	2020-10-16	Open Forum Infect Dis	Genome-Wide Association Study Identifies Novel Colony Stimulating Factor 1 Locus Conferring Susceptibility to Cryptococcosis in Human Immunodeficiency Virus-Infected South Africans.	Cryptococcosis in HIV infection	319 South African ancestry cases, 399 South African ancestry controls	NA	6p22.1	HLA-H	rs2394251-?	NR	9E-6		0.7439	[NR]	Illumina [2686126] (imputed)	N
595	chr6_mcf_hap5	1325573	1325574	rs3823363	34642315	Ferreiro-Iglesias A	2021-10-12	Nat Commun	Germline determinants of humoral immune response to HPV-16 protect against oropharyngeal cancer.	Oropharynx cancer and human papilloma virus 16 negative oropharyngeal cancer	2,359 European ancestry cases, 565 European ancestry controls	NA	6p22.1		rs3823363-A	NR	1E-7		0.8222		Illumina [up to 7574753] (imputed)	N
595	chr6_mcf_hap5	1326319	1326320	rs3823379	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	6p22.1	HLA-A	rs3823379-T	0.487762	1E-16		0.0171763	[0.013-0.021] unit decrease	Affymetrix [NR] (imputed)	N
595	chr6_mcf_hap5	1326404	1326405	rs2735075	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p22.1		rs2735075-T	0.592	2E-18				Affymetrix [10369434] (imputed)	N
595	chr6_mcf_hap5	1327810	1327811	rs3132685	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small HDL	115,082 European ancestry individuals	NA	6p22.1		rs3132685-G	0.865719	1E-10		0.0393348	[0.027-0.051] unit increase	NR [11722792] (imputed)	N
595	chr6_mcf_hap5	1327810	1327811	rs3132685	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	6p22.1		rs3132685-G	0.865719	6E-9		0.0355211	[0.024-0.047] unit decrease	NR [11722792] (imputed)	N
595	chr6_mcf_hap5	1327810	1327811	rs3132685	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small HDL	115,082 European ancestry individuals	NA	6p22.1		rs3132685-G	0.865719	5E-12		0.0418299	[0.03-0.054] unit increase	NR [11722792] (imputed)	N
595	chr6_mcf_hap5	1327810	1327811	rs3132685	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-3 fatty acid levels	115,006 European ancestry individuals	NA	6p22.1		rs3132685-G	0.865725	2E-11		0.0394662	[0.028-0.051] unit increase	NR [11722792] (imputed)	N
595	chr6_mcf_hap5	1327810	1327811	rs3132685	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Monounsaturated fatty acid levels	115,006 European ancestry individuals	NA	6p22.1		rs3132685-G	0.865725	2E-8		0.033954	[0.022-0.046] unit increase	NR [11722792] (imputed)	N
595	chr6_mcf_hap5	1327810	1327811	rs3132685	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small HDL	115,082 European ancestry individuals	NA	6p22.1		rs3132685-G	0.865719	5E-10		0.0372621	[0.026-0.049] unit increase	NR [11722792] (imputed)	N
595	chr6_mcf_hap5	1327810	1327811	rs3132685	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p22.1	NR	rs3132685-A	0.1302	2E-13		0.0131	[0.0096-0.0166] unit decrease	NR [7666894] (imputed)	N
595	chr6_mcf_hap5	1336964	1336965	rs17180647	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p22.1	NR	rs17180647-?	NR	4E-7		0.3884	[0.24-0.54] unit decrease	Illumina [at least 560000] (imputed)	N
595	chr6_mcf_hap5	1341863	1341864	rs7749944	30850646	Tziotzios C	2019-03-08	Nat Commun	Genome-wide association study in frontal fibrosing alopecia identifies four susceptibility loci including HLA-B*07:02.	Frontal fibrosing alopecia	1,016 European ancestry cases, 4,145 European ancestry controls		6p22.1	NR	rs7749944-?	0.006	8E-42		10.06	[7.2-14.1]	Illumina [~ 8000000] (imputed)	N
595	chr6_mcf_hap5	1346692	1346693	rs12110437	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	76 Han Chinese ancestry cases, 889 Han Chinese ancestry controls	NA	6p22.1	HLA-G	rs12110437-?	NR	2E-10				Illumina [3403929] (imputed)	N
595	chr6_mcf_hap5	1352452	1352453	rs7758512	20041166	Fellay J	2009-12-24	PLoS Genet	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	6p22.1	HLA-A, ZNRD1, RNF39	rs7758512-?	NR	2E-8	(progression)			Illumina [NR]	N
595	chr6_mcf_hap5	1352823	1352824	rs3094146	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total concentration of lipoprotein particles	115,082 European ancestry individuals	NA	6p22.1		rs3094146-G	0.871463	2E-9		0.0352048	[0.024-0.047] unit increase	NR [11722792] (imputed)	N
595	chr6_mcf_hap5	1352823	1352824	rs3094146	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Polyunsaturated fatty acid levels	115,006 European ancestry individuals	NA	6p22.1		rs3094146-G	0.871472	2E-13		0.0443955	[0.033-0.056] unit increase	NR [11722792] (imputed)	N
595	chr6_mcf_hap5	1352823	1352824	rs3094146	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6p22.1		rs3094146-G	0.871463	1E-8		0.0355971	[0.023-0.048] unit decrease	NR [11722792] (imputed)	N
595	chr6_mcf_hap5	1352823	1352824	rs3094146	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphoglycerides levels	115,006 European ancestry individuals	NA	6p22.1		rs3094146-G	0.871472	3E-10		0.0370038	[0.026-0.049] unit increase	NR [11722792] (imputed)	N
595	chr6_mcf_hap5	1352823	1352824	rs3094146	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphatidylcholine levels	115,006 European ancestry individuals	NA	6p22.1		rs3094146-G	0.871472	3E-9		0.0343894	[0.023-0.046] unit increase	NR [11722792] (imputed)	N
595	chr6_mcf_hap5	1352823	1352824	rs3094146	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	6p22.1		rs3094146-G	0.871463	5E-10		0.0351913	[0.024-0.046] unit increase	NR [11722792] (imputed)	N
595	chr6_mcf_hap5	1352823	1352824	rs3094146	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium HDL particles	115,082 European ancestry individuals	NA	6p22.1		rs3094146-G	0.871463	2E-11		0.0384568	[0.027-0.05] unit increase	NR [11722792] (imputed)	N
595	chr6_mcf_hap5	1352823	1352824	rs3094146	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of HDL particles	115,082 European ancestry individuals	NA	6p22.1		rs3094146-G	0.871463	4E-10		0.0365016	[0.025-0.048] unit increase	NR [11722792] (imputed)	N
595	chr6_mcf_hap5	1352823	1352824	rs3094146	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	6p22.1		rs3094146-G	0.871463	2E-9		0.034562	[0.023-0.046] unit increase	NR [11722792] (imputed)	N
595	chr6_mcf_hap5	1352823	1352824	rs3094146	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein A1 levels	115,082 European ancestry individuals	NA	6p22.1		rs3094146-G	0.871463	9E-11		0.036855	[0.026-0.048] unit increase	NR [11722792] (imputed)	N
595	chr6_mcf_hap5	1352823	1352824	rs3094146	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p22.1	ZNRD1-AS1	rs3094146-C	NR	4E-10		0.0289428	[0.02-0.038] unit decrease	Affymetrix [323858] (imputed)	N
595	chr6_mcf_hap5	1352823	1352824	rs3094146	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Help-seeking from a GP (without major depressive disorder symptoms)	8,632 British ancestry cases, 49,493 British ancestry controls	NA	6p22.1	NR	rs3094146-G	0.87	5E-8		1.1494253	[1.10-1.20]	NR [5276842] (imputed)	N
595	chr6_mcf_hap5	1352823	1352824	rs3094146	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p22.1	NR	rs3094146-C	0.1057	7E-7	(EA)	0.0543	[0.033-0.076] unit decrease	Illumina [~ 11800000] (imputed)	N
595	chr6_mcf_hap5	1355788	1355789	rs4313034	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p22.1		rs4313034-T	0.825373	2E-18		1.048594	[1.04-1.06]	Affymetrix, Illumina [9851866] (imputed)	N
595	chr6_mcf_hap5	1355788	1355789	rs4313034	21900946	Nakabayashi K	2011-09-08	J Hum Genet	Identification of independent risk loci for Graves' disease within the MHC in the Japanese population.	Graves' disease	1,119 Japanese ancestry cases, 2,718 Japanese ancestry controls	432 Japanese ancestry cases, 1,157 Japanese ancestry controls	6p22.1	MHC	rs4313034-T	0.83	2E-15		1.67	[1.47-1.90]	Perlegen [268068]	N
595	chr6_mcf_hap5	1359732	1359733	rs886997	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Asthma	13,015 East Asian ancestry cases, 162,933 East Asian ancestry controls	NA	6p22.1		rs886997-T	0.201391947	2E-10		0.10704092	[0.074-0.14] unit increase	Illumina [13429513] (imputed)	N
595	chr6_mcf_hap5	1360215	1360216	rs4713281	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p22.1	HLA-J, NCRNA00171	rs4713281-A	0.28	1E-6	(EA)	1.97	[1.49-2.59]	Illumina [up to 547389]	N
595	chr6_mcf_hap5	1368205	1368206	rs3115631	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	ZNRD1-AS1	rs3115631-A	NR	4E-17		0.0400652	[0.031-0.049] unit decrease	Affymetrix [323858] (imputed)	N
595	chr6_mcf_hap5	1368205	1368206	rs3115631	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	ZNRD1-AS1	rs3115631-A	NR	2E-16		0.0390685	[0.03-0.048] unit decrease	Affymetrix [127266] (imputed)	N
595	chr6_mcf_hap5	1368205	1368206	rs3115631	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Major depressive disorder (lifetime)	16,301 British ancestry cases, 50,870 British ancestry controls	NA	6p22.1	NR	rs3115631-?	NR	4E-7		1.1037527	[1.06-1.15]	NR [5276842] (imputed)	N
595	chr6_mcf_hap5	1368205	1368206	rs3115631	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Help-seeking from a GP	113,262 British ancestry cases, 219,360 British ancestry controls	NA	6p22.1	NR	rs3115631-T	0.874	3E-13		1.059322	[1.04-1.08]	NR [5276842] (imputed)	N
595	chr6_mcf_hap5	1383584	1383585	rs62388754	30850646	Tziotzios C	2019-03-08	Nat Commun	Genome-wide association study in frontal fibrosing alopecia identifies four susceptibility loci including HLA-B*07:02.	Frontal fibrosing alopecia	1,016 European ancestry cases, 4,145 European ancestry controls		6p22.1	NR	rs62388754-?	0.058	5E-32		2.76	[2.33-3.27]	Illumina [~ 8000000] (imputed)	N
595	chr6_mcf_hap5	1387634	1387635	rs4711207	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Allergic rhinitis	4,387 European ancestry cases, 471,273 European ancestry controls, 7,897 East Asian ancestry cases, 153,666 East Asian ancestry controls	NA	6p22.1		rs4711207-A	NR	2E-8		0.087	[0.057-0.117] unit decrease	Affymetrix, Illumina [25843170] (imputed)	N
595	chr6_mcf_hap5	1387634	1387635	rs4711207	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p22.1	NR	rs4711207-A	0.366	3E-19	(IFNAR2_of_CD20p)			Illumina [5084123] (imputed)	N
595	chr6_mcf_hap5	1390626	1390627	rs3910312	35232999	Garcia-Etxebarria K	2022-03-01	Sci Rep	Local genetic variation of inflammatory bowel disease in Basque population and its effect in risk prediction.	Ulcerative colitis	208 European ancestry cases, 935 European ancestry controls	NA	6p22.1		rs3910312-C	0.255	7E-7		1.8		Illumina [5409651] (imputed)	N
595	chr6_mcf_hap5	1395766	1395767	rs9261224	31217265	Sliz E	2019-06-19	J Med Genet	Genome-wide association study identifies seven novel loci associating with circulating cytokines and cell adhesion molecules in Finns.	Interleukin-1-beta levels	13,577 Finnish ancestry individuals	NA	6p22.1	HLA	rs9261224-T	0.035	1E-9		0.261	unit increase	Illumina [NR] (imputed)	N
595	chr6_mcf_hap5	1398963	1398964	rs6917603	31217265	Sliz E	2019-06-19	J Med Genet	Genome-wide association study identifies seven novel loci associating with circulating cytokines and cell adhesion molecules in Finns.	Interleukin-1-beta levels	13,577 Finnish ancestry individuals	NA	6p22.1	HLA	rs6917603-C	0.251	2E-12		0.163	unit decrease	Illumina [NR] (imputed)	N
595	chr6_mcf_hap5	1398963	1398964	rs6917603	22286219	Kettunen J	2012-01-29	Nat Genet	Genome-wide association study identifies multiple loci influencing human serum metabolite levels.	Lipid metabolism phenotypes	8,330 European ancestry individuals	NA	6p22.1	PPP1R11	rs6917603-?	NR	3E-29	(XXL-VLDL-P)	0.24	[0.2-0.28] unit decrease	Illumina [~ 7700000] (imputed)	N
595	chr6_mcf_hap5	1404979	1404980	rs9261259	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	ZNRD1-AS1	rs9261259-C	NR	2E-16		0.0319539	[0.024-0.04] unit decrease	Affymetrix [127266] (imputed)	N
595	chr6_mcf_hap5	1407403	1407404	rs259919	32276964	Shete S	2020-04-10	Cancer Res	A genome-wide association study identifies two novel susceptible regions for squamous cell carcinoma of the head and neck.	Head and neck squamous cell carcinoma	2,171 European ancestry cases, 4,493 European ancestry controls	5,205 European ancestry cases, 3,232 European ancestry controls	6p22.1	ZNRD1-AS1	rs259919-A	0.28	3E-9		1.17	[1.11-1.24]	Illumina [7858089] (imputed)	N
595	chr6_mcf_hap5	1407403	1407404	rs259919	20041166	Fellay J	2009-12-24	PLoS Genet	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	6p22.1	ZNRD1, C6orf12	rs259919-?	NR	3E-7	(setpoint)			Illumina [NR]	N
595	chr6_mcf_hap5	1412014	1412015	rs9261269	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p22.1	ZintergenicD1	rs9261269-A		4E-32		0.038	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
595	chr6_mcf_hap5	1414419	1414420	rs8321	23453885	Smoller JW	2013-02-27	Lancet	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NA	6p22.1	MHC region	rs8321-?	NR	8E-9	(5 degree of freedom test)	1.081	[1.04-1.12]	NR [1252901] (imputed)	N
595	chr6_mcf_hap5	1414419	1414420	rs8321	19115949	Limou S	2009-01-01	J Infect Dis	Genomewide association study of an AIDS-nonprogression cohort emphasizes the role played by HLA genes (ANRS Genomewide Association Study 02).	AIDS progression	275 European ancestry seropositive non-progressors, 86 European ancestry seropositive rapid progressors, 1,352 European ancestry seronegative controls	(see Fellay 2007)	6p22.1	ZNRD1, RNF39	rs8321-G	NR	5E-7				Illumina [291119]	N
595	chr6_mcf_hap5	1417238	1417239	rs9261281	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p22.1		rs9261281-?	NR	1E-9		0.0377761	[0.026-0.05] unit increase	Affymetrix [20259828] (imputed)	N
595	chr6_mcf_hap5	1419887	1419888	rs6539	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	6p22.1	NR	rs6539-?	NR	3E-6		0.0618	[0.036-0.088] unit increase	Illumina [at least 560000] (imputed)	N
595	chr6_mcf_hap5	1421137	1421138	rs2301753	26534935	Weng L	2015-11-03	Physiol Genomics	Genetic loci associated with nonobstructive coronary artery disease in Caucasian women.	Nonobstructive coronary artery disease	332 European ancestry female cases, 1,003 European ancestry female controls	NA	6p22.1	RNF39	rs2301753-?	0.883	7E-7		2.5	[1.75-3.57]	Illumina [52371]	N
595	chr6_mcf_hap5	1422188	1422189	rs10947050	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Chickenpox	107,769 European ancestry cases, 15,982 European ancestry controls	NA	6p22.1	NR	rs10947050-?	NR	1E-10		0.0904	[0.063-0.118] unit decrease	Illumina [at least 560000] (imputed)	N
595	chr6_mcf_hap5	1424897	1424898	rs142979264	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs142979264-?		6E-8		1.06	[1.04-1.09]	Illumina [7645193] (imputed)	N
595	chr6_mcf_hap5	1424897	1424898	rs142979264	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs142979264-?		7E-9		1.84	[1.50-2.26]	Illumina [7645193] (imputed)	N
595	chr6_mcf_hap5	1426285	1426286	rs3132682	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	6p22.1	RNF39	rs3132682-C	0.5898	2E-30		0.04162196	[0.035-0.049] unit increase	Affymetrix [~ 2500000] (imputed)	N
595	chr6_mcf_hap5	1427096	1427097	rs1150735	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	RNF39	rs1150735-A	NR	5E-8		5.462	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
595	chr6_mcf_hap5	1427895	1427896	rs1245372	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of linoleic acid to total fatty acids	115,006 European ancestry individuals	NA	6p22.1		rs1245372-A	0.830801	3E-8		0.029543	[0.019-0.04] unit decrease	NR [11722792] (imputed)	N
595	chr6_mcf_hap5	1434839	1434840	rs1264712	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	AL669914.1	rs1264712-A	NR	9E-17		0.0323321	[0.025-0.04] unit decrease	Affymetrix [323858] (imputed)	N
595	chr6_mcf_hap5	1434839	1434840	rs1264712	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p22.1	AL669914.1	rs1264712-A	NR	4E-10		0.0241409	[0.017-0.032] unit decrease	Affymetrix [323858] (imputed)	N
595	chr6_mcf_hap5	1437710	1437711	rs142292417	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	6p22.1		rs142292417-T	0.984003	1E-8		0.0906224	[0.059-0.122] unit increase	NR [11722792] (imputed)	N
596	chr6_mcf_hap5	1441938	1441939	rs3132681	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p22.1		rs3132681-C	0.603	1E-38				Affymetrix [10369434] (imputed)	N
596	chr6_mcf_hap5	1441938	1441939	rs3132681	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	ENSG00000252901	rs3132681-A	NR	2E-8		5.598	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
596	chr6_mcf_hap5	1443258	1443259	rs9261387	28394258	Wild PS	2017-04-10	J Clin Invest	Large-scale genome-wide analysis identifies genetic variants associated with cardiac structure and function.	Isovolumetric relaxation time	21,852 European ancestry individuals	14,787 European ancestry individuals	6p22.1	TRIM31	rs9261387-C	0.92	7E-7		0.003	[0.001-0.005] unit increase	Affymetrix, Illumina [at least 283291] (imputed)	N
596	chr6_mcf_hap5	1445568	1445569	rs1264705	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium HDL	115,082 European ancestry individuals	NA	6p22.1		rs1264705-G	0.868792	2E-12		0.0396576	[0.029-0.051] unit increase	NR [11722792] (imputed)	N
596	chr6_mcf_hap5	1447043	1447044	rs1156533	33888516	Zheng T	2021-04-22	Gut	Genome-wide analysis of 944 133 individuals provides insights into the etiology of haemorrhoidal disease.	Haemorrhoidal disease	218,920 European ancestry cases, 725,213 European ancestry controls	NA	6p22.1	TRIM31	rs1156533-?	0.2952	2E-8		0.98	[0.97-0.98]	Affymetrix, Illumina [8494288] (imputed)	N
596	chr6_mcf_hap5	1447437	1447438	rs17187854	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	6p22.1	intergenic	rs17187854-T	0.0032	3E-12		0.2201749	[0.16-0.28] unit decrease	Affymetrix [~ 2500000] (imputed)	N
596	chr6_mcf_hap5	1447925	1447926	rs916570	31272903	Sunadome H	2019-07-01	Allergol Int	Correlation between eosinophil count, its genetic background and body mass index: The Nagahama Study.	Eosinophil counts	4,650 East Asian ancestry individuals	NA	6p22.1	NR	rs916570-G	0.19	1E-7		0.1384	NR unit increase	Illumina [103680] (imputed)	N
596	chr6_mcf_hap5	1447925	1447926	rs916570	31272903	Sunadome H	2019-07-01	Allergol Int	Correlation between eosinophil count, its genetic background and body mass index: The Nagahama Study.	Eosinophil counts	4,206 East Asian ancestry individuals	NA	6p22.1	NR	rs916570-G	0.19	3E-7		0.1428	NR unit increase	Illumina [103680] (imputed)	N
596	chr6_mcf_hap5	1448876	1448878	rs143211693	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	6p22.1	Intergenic	rs143211693-?	NR	5E-6		0.0195207	[0.011-0.028] unit increase	Illumina [13519193] (imputed)	N
596	chr6_mcf_hap5	1448876	1448878	rs143211693	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p22.1	Intergenic	rs143211693-?	NR	2E-6		0.0186889	[0.011-0.026] unit increase	Illumina [13520550] (imputed)	N
596	chr6_mcf_hap5	1448876	1448878	rs143211693	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	6p22.1	Intergenic	rs143211693-?	NR	4E-9		0.026814	[0.018-0.036] unit increase	Illumina [13520550] (imputed)	N
596	chr6_mcf_hap5	1449450	1449451	rs1264697	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	76 Han Chinese ancestry cases, 889 Han Chinese ancestry controls	NA	6p22.1	TRIM31	rs1264697-?	NR	1E-8	(conditional on rs12110437)			Illumina [3403929] (imputed)	N
596	chr6_mcf_hap5	1450495	1450496	rs13214608	33831438	Williams JE	2021-04-05	Genomics	Key genetic variants associated with variation of milk oligosaccharides from diverse human populations.	Human milk oligosaccharide concentration (lacto-N-fucopentaose III) in non-secretors	90 European, Sub-Saharan African, Hispanic or unknown ancestry individuals	NA	6p22.1		rs13214608-?	NR	3E-11				Illumina [1128286]	N
596	chr6_mcf_hap5	1451864	1451865	rs1111180	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	6p22.1	TRIM31-AS1	rs1111180-C	0.5667	4E-37		0.04561007	[0.039-0.053] unit decrease	Affymetrix [~ 2500000] (imputed)	N
596	chr6_mcf_hap5	1451864	1451865	rs1111180	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	6p22.1	TRIM31-AS1	rs1111180-C	0.5666	2E-35		0.04474978	[0.038-0.052] unit decrease	Affymetrix [~ 2500000] (imputed)	N
596	chr6_mcf_hap5	1452819	1452820	rs1110446	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6p22.1		rs1110446-?	NR	3E-6		1.05914	[1.04-1.08]	NR [685523]	N
596	chr6_mcf_hap5	1452819	1452820	rs1110446	29784950	Sawai H	2018-05-21	Sci Rep	Genome-wide association study identified new susceptible genetic variants in HLA class I region for hepatitis B virus-related hepatocellular carcinoma.	Hepatocellular carcinoma in hepatitis B infection	473 Japanese ancestry chronic hepatitis and hepatocellular carcinoma cases, 516 Japanese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma	153 Japanese ancestry chronic hepatitis and hepatocellular carcinoma cases, 614 Japanese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma, 94 Chinese ancestry chronic hepatitis and hepatocellular carcinoma cases, 187 Chinese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma, 185 Thai ancestry chronic hepatitis and hepatocellular carcinoma cases, 198 Thai ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma	6p22.1	HLA	rs1110446-?	NR	9E-13		1.93	[1.57-2.37] Japanese	Affymetrix [447830]	N
596	chr6_mcf_hap5	1452819	1452820	rs1110446	29784950	Sawai H	2018-05-21	Sci Rep	Genome-wide association study identified new susceptible genetic variants in HLA class I region for hepatitis B virus-related hepatocellular carcinoma.	Hepatocellular carcinoma in hepatitis B infection	473 Japanese ancestry chronic hepatitis and hepatocellular carcinoma cases, 516 Japanese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma	153 Japanese ancestry chronic hepatitis and hepatocellular carcinoma cases, 614 Japanese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma, 94 Chinese ancestry chronic hepatitis and hepatocellular carcinoma cases, 187 Chinese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma, 185 Thai ancestry chronic hepatitis and hepatocellular carcinoma cases, 198 Thai ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma	6p22.1	HLA	rs1110446-?	NR	3E-10	(Japanese)	1.93	[1.57-2.37]	Affymetrix [447830]	N
596	chr6_mcf_hap5	1453212	1453213	rs1116221	32771030	Tangtanatakul P	2020-08-08	Arthritis Res Ther	Meta-analysis of genome-wide association study identifies FBN2 as a novel locus associated with systemic lupus erythematosus in Thai population.	Systemic lupus erythematosus	487 Thai cases, 1,606 Thai controls	405 Thai cases, 1,590 Thai controls	6p22.1	TRIM31	rs1116221-A	0.08	3E-6		1.594	[NR]	Illumina [421909] (imputed)	N
596	chr6_mcf_hap5	1454507	1454508	rs3094136	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p22.1	NR	rs3094136-C	0.44	2E-6	(IFNAR2_of_CD4p_T)			Illumina [5084123] (imputed)	N
596	chr6_mcf_hap5	1454690	1454691	rs111537560	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mumps	31,227 European ancestry cases, 54,153 European ancestry controls	NA	6p22.1	NR	rs111537560-?	NR	5E-16		0.5917	[0.45-0.74] unit increase	Illumina [at least 560000] (imputed)	N
596	chr6_mcf_hap5	1455077	1455078	rs3132680	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6p22.1	RNF39	rs3132680-?	NR	7E-6	(SM 18:0)	0.17183183	[0.097-0.247] unit decrease	Affymetrix [at least 2500000] (imputed)	N
596	chr6_mcf_hap5	1455141	1455142	rs2517664	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p22.1		rs2517664-T	0.816537	9E-13		1.0407012	[1.03-1.05]	Affymetrix, Illumina [9851866] (imputed)	N
596	chr6_mcf_hap5	1455141	1455142	rs2517664	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	TRIM31-AS1	rs2517664-T	NR	1E-8		5.707	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
596	chr6_mcf_hap5	1455312	1455313	rs6915823	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	6p22.1	NR	rs6915823-?	NR	1E-23		10.046	NR z score decrease	Illumina [at least 830937] (imputed)	N
596	chr6_mcf_hap5	1455658	1455659	rs7767188	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	6p22.1	NR	rs7767188-A	0.21	2E-8		1.06	[1.04-1.08]	Illumina [20370935] (imputed)	N
596	chr6_mcf_hap5	1455729	1455730	rs2844795	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total phospholipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	6p22.1		rs2844795-C	0.480583	2E-9		0.0234643	[0.016-0.031] unit decrease	NR [11722792] (imputed)	N
596	chr6_mcf_hap5	1455729	1455730	rs2844795	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	6p22.1		rs2844795-C	0.480583	2E-9		0.0242799	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
596	chr6_mcf_hap5	1455729	1455730	rs2844795	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total fatty acid levels	115,006 European ancestry individuals	NA	6p22.1		rs2844795-C	0.480588	2E-9		0.0242374	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
596	chr6_mcf_hap5	1455729	1455730	rs2844795	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholines levels	115,006 European ancestry individuals	NA	6p22.1		rs2844795-C	0.480588	6E-9		0.0224748	[0.015-0.03] unit decrease	NR [11722792] (imputed)	N
596	chr6_mcf_hap5	1455729	1455730	rs2844795	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-6 fatty acid levels	115,006 European ancestry individuals	NA	6p22.1		rs2844795-C	0.480588	5E-13		0.0289827	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
596	chr6_mcf_hap5	1455729	1455730	rs2844795	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Linoleic acid levels	115,006 European ancestry individuals	NA	6p22.1		rs2844795-C	0.480588	4E-14		0.0305085	[0.023-0.038] unit decrease	NR [11722792] (imputed)	N
596	chr6_mcf_hap5	1455729	1455730	rs2844795	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	6p22.1		rs2844795-C	0.480583	3E-8		0.0227871	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
596	chr6_mcf_hap5	1455954	1455955	rs2517601	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in diabetes	70,762 European ancestry individuals, 20,967 African American individuals	NA	6p22.1	TRIM31	rs2517601-C	0.115	4E-12		0.956	[0.69-1.23] unit decrease	Affymetrix [NR] (imputed)	N
596	chr6_mcf_hap5	1455954	1455955	rs2517601	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p22.1	NR	rs2517601-C	0.1326	5E-13		0.0126	[0.0093-0.0159] unit decrease	NR [7666894] (imputed)	N
596	chr6_mcf_hap5	1456192	1456193	rs78026509	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	6p22.1	TRIM31, TRIM31-AS1	rs78026509-G	0.0759	2E-9		0.04028003	[0.027-0.053] unit decrease	Affymetrix [~ 2500000] (imputed)	N
596	chr6_mcf_hap5	1456985	1456986	rs2523992	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p22.1	NR	rs2523992-G	0.1571	2E-7	(EA)	0.0468	[0.029-0.064] unit decrease	Illumina [~ 11800000] (imputed)	N
596	chr6_mcf_hap5	1457747	1457748	rs2023472	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p22.1		rs2023472-A	0.411	6E-25				Affymetrix [10369434] (imputed)	N
596	chr6_mcf_hap5	1457747	1457748	rs2023472	23417110	Tin A	2013-02-16	Hum Genet	Genome-wide association study identified the human leukocyte antigen region as a novel locus for plasma beta-2 microglobulin.	Beta-2 microglubulin plasma levels	6,728 European ancestry individuals		6p22.1	TRIM31	rs2023472-A	0.38	3E-15		0.03	[0.022-0.038] unit increase	Affymetrix [2500000] (imputed)	N
596	chr6_mcf_hap5	1458000	1458001	rs11961190	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	6p22.1	TRIM31, TRIM31-AS1	rs11961190-T	0.00312500000000004	2E-22		0.19694449	[0.16-0.24] unit decrease	Affymetrix [93095623] (imputed)	N
596	chr6_mcf_hap5	1458000	1458001	rs11961190	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6p22.1	TRIM31, TRIM31-AS1	rs11961190-T	0.00312500000000004	1E-23		0.20271449	[0.16-0.24] unit decrease	Affymetrix [93095623] (imputed)	N
596	chr6_mcf_hap5	1458000	1458001	rs11961190	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	6p22.1	TRIM31, TRIM31-AS1	rs11961190-T	0.00311799999999995	3E-29		0.22552978	[0.19-0.26] unit decrease	Affymetrix [93095623] (imputed)	N
596	chr6_mcf_hap5	1458000	1458001	rs11961190	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6p22.1	TRIM31, TRIM31-AS1	rs11961190-T	0.00311700000000004	4E-27		0.21662813	[0.18-0.26] unit decrease	Affymetrix [93095623] (imputed)	N
596	chr6_mcf_hap5	1458539	1458540	rs9261418	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	6p22.1	TRIM15	rs9261418-A	0.144604	2E-8		5.61	z score increase	NR [10847151] (imputed)	N
596	chr6_mcf_hap5	1459014	1459015	rs9378220	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	6p22.1	TRIM31	rs9378220-?	NR	4E-18		0.0309	[0.025-0.037] unit increase	Affymetrix [5701386] (imputed)	N
596	chr6_mcf_hap5	1459108	1459109	rs2523990	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	6p22.1	TRIM31, TRIM31-AS1	rs2523990-G	0.538375	2E-32		0.029605733	[0.025-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
596	chr6_mcf_hap5	1459108	1459109	rs2523990	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6p22.1	TRIM31, TRIM31-AS1	rs2523990-G	0.538376	5E-71		0.044279587	[0.039-0.049] unit decrease	Affymetrix [93095623] (imputed)	N
596	chr6_mcf_hap5	1460156	1460157	rs2523989	33909500	Moll M	2021-04-28	Am J Physiol Lung Cell Mol Physiol	A Systematic Analysis of Protein-altering Exonic Variants in Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease	up to 31,465 European ancestry cases, up to 203,688 European ancestry controls, up to 1,413 African ancestry cases, up to 6,080 African ancestry controls, up to 287 East Asian ancestry cases, up to 7,484 East Asian ancestry controls, up to 61 Hispanic cases, up to 613 Hispanic controls	NA	6p22.1	TRIM31	rs2523989-T	0.17	1E-10		1.09	[1.06 -1.12]	Illumina [at least 109036]	N
596	chr6_mcf_hap5	1460156	1460157	rs2523989	25936594	Tomer Y	2015-04-27	J Autoimmun	Genome wide identification of new genes and pathways in patients with both autoimmune thyroiditis and type 1 diabetes.	Type 1 diabetes and autoimmune thyroid diseases	346 European ancestry cases, 727 European ancestry controls	185 European ancestry cases, 340 European ancestry controls	6p22.1	TRIM31	rs2523989-A	NR	2E-8		1.7499		Illumina [514008]	N
596	chr6_mcf_hap5	1461873	1461874	rs2523987	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p22.1	TRIM31, TRIM31-AS1, TRIM40, SNORA48	rs2523987-C	0.1149598	2E-13	(EA, MHC class I polypeptide-related sequence A)	0.4957	[0.36-0.63] unit increase	Affymetrix [509946]	N
596	chr6_mcf_hap5	1462988	1462989	rs9261425	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	6p22.1	NR	rs9261425-?	NR	6E-7		0.0545	[0.033-0.076] unit increase	Illumina [at least 560000] (imputed)	N
596	chr6_mcf_hap5	1463622	1463623	rs28780084	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p22.1	NR	rs28780084-?	NR	9E-8		0.0841	[0.053-0.115] unit decrease	Illumina [at least 560000] (imputed)	N
596	chr6_mcf_hap5	1465589	1465590	rs2523978	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	6p22.1	TRIM31	rs2523978-C	0.869967	4E-24		0.0286531	[0.023-0.034] unit increase	Affymetrix [NR] (imputed)	N
596	chr6_mcf_hap5	1465589	1465590	rs2523978	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	6p22.1	TRIM31	rs2523978-C	0.869885	7E-28		0.031888	[0.026-0.038] unit increase	Affymetrix [NR] (imputed)	N
596	chr6_mcf_hap5	1468303	1468304	rs9261431	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p22.1	NR	rs9261431-?	NR	2E-19		0.1221	[0.095-0.149] unit increase	Illumina [at least 560000] (imputed)	N
596	chr6_mcf_hap5	1469490	1469491	rs115254023	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6p22.1		rs115254023-T	0.018886	8E-29		0.092888236	[0.077-0.109] unit increase	Affymetrix [93095623] (imputed)	N
596	chr6_mcf_hap5	1474819	1474820	rs1419674	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p22.1	NR	rs1419674-T	0.02787	7E-9	(SBDS)	0.03953	NR unit increase	Illumina [1671387] (imputed)	N
596	chr6_mcf_hap5	1475021	1475022	rs2517592	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	SNORA48	rs2517592-T	NR	5E-8		5.465	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
596	chr6_mcf_hap5	1475248	1475249	rs10947055	21348951	Parsa A	2011-02-01	Clin Transl Sci	Hypertrophy-associated polymorphisms ascertained in a founder cohort applied to heart failure risk and mortality.	Cardiac hypertrophy	851 Old Order Amish individuals	NA	6p22.1	TRIM38	rs10947055-?	NR	2E-7	(additive, recessive)			Affymetrix [361034]	N
596	chr6_mcf_hap5	1475997	1475998	rs2844790	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	SNORA48	rs2844790-C	NR	4E-10		6.271	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
596	chr6_mcf_hap5	1475997	1475998	rs2844790	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p22.1	NR	rs2844790-?	NR	1E-8		0.1888	[0.12-0.25] unit increase	Illumina [at least 560000] (imputed)	N
596	chr6_mcf_hap5	1482873	1482874	rs61211515	29404672	Roshandel D	2018-02-05	Diabetologia	Meta-genome-wide association studies identify a locus on chromosome 1 and multiple variants in the MHC region for serum C-peptide in type 1 diabetes.	Stimulated C-peptide levels in type I diabetes	1,303 European ancestry individuals	NA	6p22.1	MHC	rs61211515-?	0.16	1E-7		0.39	[0.25-0.53] unit decrease	Illumina [8978838] (imputed)	N
596	chr6_mcf_hap5	1482873	1482874	rs61211515	29404672	Roshandel D	2018-02-05	Diabetologia	Meta-genome-wide association studies identify a locus on chromosome 1 and multiple variants in the MHC region for serum C-peptide in type 1 diabetes.	C-peptide levels in type I diabetes	3,479 European ancestry individuals	NA	6p22.1	MHC	rs61211515-?	0.16	2E-6				Illumina [7988630] (imputed)	N
596	chr6_mcf_hap5	1483462	1483463	rs115333019	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	6p22.1	SNORA48, TRIM40	rs115333019-G	0.00916799999999995	8E-43		0.1634603	[0.14-0.19] unit decrease	Affymetrix [93095623] (imputed)	N
596	chr6_mcf_hap5	1483553	1483554	rs1362104	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	SNORA48	rs1362104-A	NR	2E-10		6.398	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
596	chr6_mcf_hap5	1487050	1487051	rs28780086	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	6p22.1	TRIM40	rs28780086-G	0.023328	1E-25		0.078185886	[0.064-0.093] unit increase	Affymetrix [93095623] (imputed)	N
596	chr6_mcf_hap5	1487050	1487051	rs28780086	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	6p22.1	TRIM40	rs28780086-G	0.023332	8E-30		0.093978085	[0.078-0.11] unit decrease	Affymetrix [93095623] (imputed)	N
596	chr6_mcf_hap5	1490571	1490572	rs9261484	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	6p22.1	TRIM40	rs9261484-T	0.2451	2E-8		0.0635	[0.042-0.085] unit decrease	NR [7784415] (imputed)	N
596	chr6_mcf_hap5	1492747	1492747	rs146464922	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	6p22.1	TRIM40	rs146464922-CTT	0.014425	8E-11		0.05988576	[0.042-0.078] unit increase	Affymetrix [93095623] (imputed)	N
596	chr6_mcf_hap5	1492959	1492960	rs117432766	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6p22.1	TRIM40	rs117432766-A	0.016714	1E-25		0.09170394	[0.075-0.109] unit increase	Affymetrix [93095623] (imputed)	N
596	chr6_mcf_hap5	1495439	1495440	rs12202131	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6p22.1	TRIM40	rs12202131-A	0.052983	2E-12		0.06297606	[0.045-0.081] unit increase	Affymetrix [93095623] (imputed)	N
596	chr6_mcf_hap5	1495844	1495845	rs3815082	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p22.1	NR	rs3815082-G	0.295	9E-12	(IFNAR2_of_CD20p)			Illumina [5084123] (imputed)	N
596	chr6_mcf_hap5	1496196	1496197	rs2256146	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p22.1	NR	rs2256146-C	0.02787	7E-9	(SBDS)	0.03953	NR unit increase	Illumina [1671387] (imputed)	N
596	chr6_mcf_hap5	1501772	1501773	rs9468692	20041166	Fellay J	2009-12-24	PLoS Genet	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	6p22.1	TRIM10	rs9468692-?	NR	1E-6	(setpoint)			Illumina [NR]	N
596	chr6_mcf_hap5	1502522	1502523	rs9468693	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	6p22.1	TRIM10	rs9468693-C	0.071694	2E-29		0.0510031	[0.043-0.059] unit decrease	Affymetrix [93095623] (imputed)	N
596	chr6_mcf_hap5	1503345	1503346	rs2022065	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	6p22.1	TRIM10	rs2022065-T	0.296544	2E-49		0.041531093	[0.036-0.047] unit decrease	Affymetrix [93095623] (imputed)	N
596	chr6_mcf_hap5	1503345	1503346	rs2022065	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6p22.1	TRIM10	rs2022065-T	0.296544	4E-41		0.041549113	[0.035-0.048] unit decrease	Affymetrix [93095623] (imputed)	N
596	chr6_mcf_hap5	1503345	1503346	rs2022065	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	6p22.1	TRIM10	rs2022065-T	0.296537	4E-62		0.05393633	[0.048-0.06] unit decrease	Affymetrix [93095623] (imputed)	N
596	chr6_mcf_hap5	1503345	1503346	rs2022065	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	6p22.1	TRIM10	rs2022065-T	0.2963	3E-25		0.04064069	[0.033-0.048] unit decrease	Affymetrix [~ 2500000] (imputed)	N
596	chr6_mcf_hap5	1503345	1503346	rs2022065	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	6p22.1	TRIM10	rs2022065-T	0.2963	1E-23		0.03931364	[0.032-0.047] unit decrease	Affymetrix [~ 2500000] (imputed)	N
596	chr6_mcf_hap5	1503345	1503346	rs2022065	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	6p22.1	TRIM10	rs2022065-T	0.2963	3E-30		0.04433495	[0.037-0.052] unit decrease	Affymetrix [~ 2500000] (imputed)	N
596	chr6_mcf_hap5	1503345	1503346	rs2022065	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	6p22.1	TRIM10	rs2022065-T	0.2962	2E-35		0.04860256	[0.041-0.056] unit decrease	Affymetrix [~ 2500000] (imputed)	N
596	chr6_mcf_hap5	1503345	1503346	rs2022065	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	6p22.1	TRIM10	rs2022065-T	0.2962	1E-34		0.04804721	[0.04-0.056] unit decrease	Affymetrix [~ 2500000] (imputed)	N
596	chr6_mcf_hap5	1504278	1504279	rs116596081	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	6p22.1	TRIM10	rs116596081-A	0.011844	3E-46		0.14981039	[0.13-0.17] unit decrease	Affymetrix [93095623] (imputed)	N
596	chr6_mcf_hap5	1504278	1504279	rs116596081	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6p22.1	TRIM10	rs116596081-A	0.0118470000000001	6E-38		0.13759963	[0.12-0.16] unit decrease	Affymetrix [93095623] (imputed)	N
596	chr6_mcf_hap5	1506696	1506697	rs144731721	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Red cell distribution width	441,263 European ancestry individuals	NA	6p22.1		rs144731721-?	NR	1E-14		0.080611	[0.059-0.102] unit increase	NR [9800000] (imputed)	N
596	chr6_mcf_hap5	1506696	1506697	rs144731721	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean reticulocyte volume	436,944 European ancestry individuals	NA	6p22.1		rs144731721-?	NR	1E-42		0.142474	[0.12-0.16] unit increase	NR [9800000] (imputed)	N
596	chr6_mcf_hap5	1506696	1506697	rs144731721	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	6p22.1	TRIM10	rs144731721-T	0.00866500000000004	5E-16		0.096417926	[0.073-0.12] unit increase	Affymetrix [93095623] (imputed)	N
596	chr6_mcf_hap5	1506696	1506697	rs144731721	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	6p22.1	TRIM10	rs144731721-T	0.00867700000000005	2E-39		0.15744652	[0.13-0.18] unit increase	Affymetrix [93095623] (imputed)	N
596	chr6_mcf_hap5	1506696	1506697	rs144731721	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	6p22.1	TRIM10	rs144731721-T	0.00866699999999998	6E-12		0.083550446	[0.06-0.107] unit increase	Affymetrix [93095623] (imputed)	N
596	chr6_mcf_hap5	1506696	1506697	rs144731721	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	6p22.1	TRIM10	rs144731721-T	0.0068	4E-11		0.1617919	[0.11-0.21] unit increase	Affymetrix [~ 2500000] (imputed)	N
596	chr6_mcf_hap5	1508506	1508507	rs116113631	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	6p22.1	TRIM10	rs116113631-T	0.010294	3E-68		0.19197759	[0.17-0.21] unit decrease	Affymetrix [93095623] (imputed)	N
596	chr6_mcf_hap5	1508506	1508507	rs116113631	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6p22.1	TRIM10	rs116113631-T	0.010297	3E-66		0.19043158	[0.17-0.21] unit decrease	Affymetrix [93095623] (imputed)	N
596	chr6_mcf_hap5	1509443	1509443	rs148280884	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	6p22.1	TRIM10	rs148280884-CAT	0.0122	4E-25		0.1718773	[0.14-0.2] unit decrease	Affymetrix [~ 2500000] (imputed)	N
596	chr6_mcf_hap5	1509443	1509443	rs148280884	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	6p22.1	TRIM10	rs148280884-CAT	0.0122	2E-27		0.1797411	[0.15-0.21] unit decrease	Affymetrix [~ 2500000] (imputed)	N
596	chr6_mcf_hap5	1509443	1509443	rs148280884	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	6p22.1	TRIM10	rs148280884-CAT	0.0122	2E-23		0.1655507	[0.13-0.2] unit decrease	Affymetrix [~ 2500000] (imputed)	N
596	chr6_mcf_hap5	1509443	1509443	rs148280884	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	6p22.1	TRIM10	rs148280884-CAT	0.0122	6E-25		0.1707215	[0.14-0.2] unit decrease	Affymetrix [~ 2500000] (imputed)	N
596	chr6_mcf_hap5	1509689	1509690	rs1573296	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	6p22.1	TRIM10	rs1573296-G	0.1349	2E-11		0.03526502	[0.025-0.046] unit decrease	Affymetrix [~ 2500000] (imputed)	N
596	chr6_mcf_hap5	1509689	1509690	rs1573296	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	6p22.1	TRIM10	rs1573296-G	0.1349	1E-14		0.04046172	[0.03-0.051] unit decrease	Affymetrix [~ 2500000] (imputed)	N
596	chr6_mcf_hap5	1509757	1509758	rs1318638	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	6p22.1	TRIM10	rs1318638-T	0.0648	3E-9		0.04268956	[0.029-0.057] unit increase	Affymetrix [~ 2500000] (imputed)	N
596	chr6_mcf_hap5	1509757	1509758	rs1318638	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin concentration	172,851 European ancestry individuals	NA	6p22.1	TRIM10	rs1318638-T	0.0649	1E-20		0.06542649	[0.052-0.079] unit decrease	Affymetrix [~ 2500000] (imputed)	N
596	chr6_mcf_hap5	1509987	1509988	rs142460927	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	6p22.1	TRIM10	rs142460927-C	0.00303299999999995	5E-25		0.21333578	[0.17-0.25] unit decrease	Affymetrix [93095623] (imputed)	N
596	chr6_mcf_hap5	1510326	1510327	rs12212092	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	6p22.1	TRIM10	rs12212092-T	0.0644400000000001	6E-20		0.043098915	[0.034-0.052] unit decrease	Affymetrix [93095623] (imputed)	N
596	chr6_mcf_hap5	1510326	1510327	rs12212092	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	6p22.1	TRIM10	rs12212092-T	0.06443	7E-84		0.096261576	[0.087-0.106] unit decrease	Affymetrix [93095623] (imputed)	N
596	chr6_mcf_hap5	1510326	1510327	rs12212092	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	6p22.1	TRIM10	rs12212092-T	0.064469	1E-29		0.051481474	[0.043-0.06] unit decrease	Affymetrix [93095623] (imputed)	N
596	chr6_mcf_hap5	1510326	1510327	rs12212092	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6p22.1	TRIM10	rs12212092-T	0.064468	1E-30		0.09085926	[0.075-0.106] unit decrease	Affymetrix [93095623] (imputed)	N
596	chr6_mcf_hap5	1510326	1510327	rs12212092	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	6p22.1	TRIM10	rs12212092-T	0.0648	1E-24		0.07379727	[0.06-0.088] unit decrease	Affymetrix [~ 2500000] (imputed)	N
596	chr6_mcf_hap5	1510326	1510327	rs12212092	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	6p22.1	TRIM10	rs12212092-T	0.0648	8E-24		0.07307307	[0.059-0.087] unit decrease	Affymetrix [~ 2500000] (imputed)	N
596	chr6_mcf_hap5	1510326	1510327	rs12212092	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	6p22.1	TRIM10	rs12212092-T	0.0648	3E-24		0.07368067	[0.059-0.088] unit decrease	Affymetrix [~ 2500000] (imputed)	N
596	chr6_mcf_hap5	1513003	1513004	rs17188113	29562276	Venkateswaran S	2018-03-01	Inflamm Bowel Dis	Enhanced Contribution of HLA in Pediatric Onset Ulcerative Colitis.	Childhood onset ulcerative colitis	466 European ancestry cases, 2,099 European ancestry controls	NA	6p22.1	HLA	rs17188113-?		9E-7		1.8086454	[1.57-2.05]	Affymetrix [3996700] (imputed)	N
596	chr6_mcf_hap5	1513591	1513592	rs17194474	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	6p22.1	TRIM15	rs17194474-C	0.028724	4E-18		0.055055395	[0.043-0.067] unit decrease	Affymetrix [93095623] (imputed)	N
596	chr6_mcf_hap5	1517857	1517858	rs9368624	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p22.1	TRIM15, TRIM10, TRIM40, TRIM31-AS1, TRIM31, TRIM26, PAIP1P1	rs9368624-A	0.1996982	3E-11	(EA, MHC class I polypeptide-related sequence A)	0.3704	[0.26-0.48] unit decrease	Affymetrix [509946]	N
596	chr6_mcf_hap5	1519529	1519530	rs1018846	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	6p22.1	TRIM15	rs1018846-A	0.064503	4E-25		0.046360865	[0.038-0.055] unit increase	Affymetrix [93095623] (imputed)	N
596	chr6_mcf_hap5	1519746	1519747	rs2107195	30037793	Haapasalo K	2018-09-21	Infect Immun	The Psoriasis Risk Allele <i>HLA-C*06:02</i> Shows Evidence of Association with Chronic or Recurrent Streptococcal Tonsillitis.	Tonsillitis	95 Finnish cases, 504 Finnish controls	NA	6p22.1	TRIM10, TRIM15	rs2107195-?		5E-6		3.7		Illumina [100000]	N
596	chr6_mcf_hap5	1520042	1520043	rs1029239	34642315	Ferreiro-Iglesias A	2021-10-12	Nat Commun	Germline determinants of humoral immune response to HPV-16 protect against oropharyngeal cancer.	Human papilloma virus 16 positive oropharyngeal cancer	1,078 European ancestry cases, 5,256 European ancestry controls	NA	6p22.1		rs1029239-G	NR	3E-6		1.2904		Illumina [7574753] (imputed)	N
596	chr6_mcf_hap5	1520525	1520526	rs1029238	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	6p22.1	TRIM15	rs1029238-A	0.089377	4E-11		0.025450304	[0.018-0.033] unit increase	Affymetrix [93095623] (imputed)	N
596	chr6_mcf_hap5	1521579	1521580	rs929156	33909500	Moll M	2021-04-28	Am J Physiol Lung Cell Mol Physiol	A Systematic Analysis of Protein-altering Exonic Variants in Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease	up to 31,465 European ancestry cases, up to 203,688 European ancestry controls, up to 1,413 African ancestry cases, up to 6,080 African ancestry controls, up to 287 East Asian ancestry cases, up to 7,484 East Asian ancestry controls, up to 61 Hispanic cases, up to 613 Hispanic controls	NA	6p22.1	TRIM15	rs929156-G	0.76	8E-8		1.06	[1.04 -1.09]	Illumina [at least 109036]	N
596	chr6_mcf_hap5	1535199	1535200	rs2106072	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p22.1	NR	rs2106072-A	0.13	3E-10		1.11	[1.08-1.15]	Affymetrix [9886854] (imputed)	N
596	chr6_mcf_hap5	1535199	1535200	rs2106072	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p22.1	NR	rs2106072-A	0.13	9E-13			[NR]	Affymetrix [9886854] (imputed)	N
596	chr6_mcf_hap5	1535199	1535200	rs2106072	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in non-current smokers	16,488 European ancestry cases, 169,688 European ancestry controls	NA	6p22.1	NR	rs2106072-A	0.13	3E-10		1.12	[1.08-1.15]	Affymetrix [9886854] (imputed)	N
596	chr6_mcf_hap5	1536987	1536988	rs2517622	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Proheparin-binding EGF-like growth factor levels	21,758 European ancestry individuals	9,173 individuals	6p22.1		rs2517622-C	0.11	1E-9		0.0845	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
596	chr6_mcf_hap5	1536987	1536988	rs2517622	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Help-seeking from a psychiatrist	36,286 British ancestry cases, 297,126 British ancestry controls	NA	6p22.1	NR	rs2517622-G	0.863	4E-11		1.0799136	NR	NR [5276842] (imputed)	N
596	chr6_mcf_hap5	1536987	1536988	rs2517622	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Help-seeking from a GP (without major depressive disorder symptoms)	8,632 British ancestry cases, 49,493 British ancestry controls	NA	6p22.1	NR	rs2517622-?	NR	3E-6		1.1223345	[1.07-1.18]	NR [5276842] (imputed)	N
596	chr6_mcf_hap5	1547107	1547108	rs2523722	22883433	Irish Schizophrenia Genomics Consortium and the Wellcome Trust Case Control Consortium 2	2012-08-07	Biol Psychiatry	Genome-wide association study implicates HLA-C*01:02 as a risk factor at the major histocompatibility complex locus in schizophrenia.	Schizophrenia	1,606 European ancestry cases, 1,794 European ancestry controls	13,195 European ancestry cases, 31,021 European ancestry controls	6p22.1	MHC, TRIM26	rs2523722-G	0.737	1E-16		1.25	[1.12-1.39]	Affymetrix [6212339]	N
596	chr6_mcf_hap5	1548720	1548721	rs2523720	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p22.1		rs2523720-C	0.836	9E-50				Affymetrix [10369434] (imputed)	N
596	chr6_mcf_hap5	1549669	1549670	rs2428503	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	TRIM26	rs2428503-T	NR	2E-9		0.0221273	[0.015-0.029] unit decrease	Affymetrix [127266] (imputed)	N
596	chr6_mcf_hap5	1550153	1550154	rs2523719	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	6p22.1	TRIM26	rs2523719-G	0.830078	2E-21		0.0245541	[0.019-0.03] unit increase	Affymetrix [NR] (imputed)	N
596	chr6_mcf_hap5	1551161	1551162	rs2517611	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (anti-inflammatory and antirheumatic products, non-steroids)	74,150 European ancestry cases, 90,370 European ancestry controls, 29,694 East Asian ancestry cases, 149,032 East Asian ancestry controls	NA	6p22.1		rs2517611-G	NR	2E-9		0.0422	[0.028-0.056] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
596	chr6_mcf_hap5	1551161	1551162	rs2517611	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Asthma	38,369 European ancestry cases, 411,131 European ancestry controls, 13,015 East Asian ancestry cases, 162,933 East Asian ancestry controls	NA	6p22.1		rs2517611-G	NR	3E-11		0.0613	[0.043-0.079] unit increase	Affymetrix, Illumina [25837673] (imputed)	N
596	chr6_mcf_hap5	1551161	1551162	rs2517611	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (anti-inflammatory and antirheumatic products, non-steroids)	74,150 European ancestry cases, 90,370 European ancestry controls	NA	6p22.1	TRIM26	rs2517611-G	0.229963	7E-10		0.050484303	[0.034-0.067] unit decrease	Affymetrix [7288503] (imputed)	N
596	chr6_mcf_hap5	1552344	1552345	rs1117490	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (childhood onset)	9,433 British ancestry cases, 318,237 British ancestry controls	NA	6p22.1	TRIM26, TRIM15, TRIM39	rs1117490-C	0.234	3E-8		1.1	[1.063-1.137]	Affymetrix [10894596] (imputed)	N
596	chr6_mcf_hap5	1552344	1552345	rs1117490	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (adult onset)	21,564 British ancestry cases, 318,237 British ancestry controls	NA	6p22.1	TRIM26, TRIM15, TRIM39	rs1117490-C	0.234	7E-7		1.059	[1.036-1.084]	Affymetrix [10894596] (imputed)	N
596	chr6_mcf_hap5	1555966	1555967	rs2021722	23453885	Smoller JW	2013-02-27	Lancet	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NA	6p22.1	MHC region	rs2021722-?	0.789	2E-12	(Modelling analysis)			NR [1252901] (imputed)	N
596	chr6_mcf_hap5	1555966	1555967	rs2021722	21926974	Ripke S	2011-09-18	Nat Genet	Genome-wide association study identifies five new schizophrenia loci.	Schizophrenia	9,394 European ancestry cases, 12,462 European ancestry controls	8,442 European ancestry cases, 21,397 European ancestry controls	6p22.1	TRIM26	rs2021722-C	0.78	2E-12		1.15	[1.11-1.19]	Affymetrix, Illumina [1252901] (imputed)	N
596	chr6_mcf_hap5	1561262	1561263	rs2844775	24489884	Mick E	2014-01-01	PLoS One	Genome-wide association study of proneness to anger.	Anger	8,747 European ancestry individuals	NA	6p22.1	TRIM31, TRIM10, PPP1R11, TRIM40, TRIM15, HLA-A29.1, TRIM26, HCG9, ZNRD1, RNF39	rs2844775-A	0.25	8E-7	(Temperament)	0.15	[NR] unit decrease	Affymetrix [677643]	N
598	chr6_mcf_hap5	1729160	1729161	rs970270	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Prostate cancer	10,792 European ancestry cases, 410,350 European ancestry controls	NA	6p22.1		rs970270-A	NR	3E-7		1.0985389	NR	Affymetrix [7846216] (imputed)	N
598	chr6_mcf_hap5	1729574	1729575	rs3132625	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Peripheral artery disease	7,114 European ancestry cases, 475,964 European ancestry controls, 4,112 East Asian ancestry cases, 173,601 East Asian ancestry controls	NA	6p22.1		rs3132625-G	NR	2E-8		0.165	[0.11-0.22] unit increase	Affymetrix, Illumina [25844651] (imputed)	N
598	chr6_mcf_hap5	1741554	1741555	rs2524204	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	6p22.1	intergenic	rs2524204-C	0.1322	6E-15		0.04113655	[0.031-0.051] unit decrease	Affymetrix [~ 2500000] (imputed)	N
598	chr6_mcf_hap5	1741554	1741555	rs2524204	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	6p22.1	intergenic	rs2524204-C	0.1322	7E-14		0.03948169	[0.029-0.05] unit decrease	Affymetrix [~ 2500000] (imputed)	N
598	chr6_mcf_hap5	1743215	1743216	rs9391683	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p22.1		rs9391683-G	0.689	2E-33				Affymetrix [10369434] (imputed)	N
598	chr6_mcf_hap5	1743280	1743281	rs2516686	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	6p22.1	intergenic	rs2516686-G	0.1322	1E-13		0.03934043	[0.029-0.05] unit decrease	Affymetrix [~ 2500000] (imputed)	N
598	chr6_mcf_hap5	1743280	1743281	rs2516686	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	6p22.1	intergenic	rs2516686-G	0.1322	6E-12		0.03638258	[0.026-0.047] unit decrease	Affymetrix [~ 2500000] (imputed)	N
598	chr6_mcf_hap5	1743664	1743665	rs9391684	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p22.1		rs9391684-G	0.688	7E-19				Affymetrix [10369434] (imputed)	N
598	chr6_mcf_hap5	1747305	1747306	rs3130116	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p22.1	NR	rs3130116-C	0.1391	6E-13		0.0124	[0.0091-0.0157] unit decrease	NR [7666894] (imputed)	N
598	chr6_mcf_hap5	1748868	1748869	rs1264565	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	6p22.1		rs1264565-T	0.618	8E-15		0.01	[0.008-0.012] unit increase	NR [NR] (imputed)	N
598	chr6_mcf_hap5	1755733	1755734	rs28780100	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p22.1	NR	rs28780100-?	NR	3E-9		0.1143	[0.077-0.152] unit increase	Illumina [at least 560000] (imputed)	N
598	chr6_mcf_hap5	1757732	1757733	rs34874107	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	6p22.1		rs34874107-C	0.182865	4E-10		0.019685585	[0.014-0.026] unit increase	Affymetrix [93095623] (imputed)	N
598	chr6_mcf_hap5	1762210	1762211	rs78860372	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lung cancer	4,444 East Asian ancestry cases, 174,282 East Asian ancestry controls	NA	6p22.1		rs78860372-T	0.236112602	5E-9		0.14972878	[0.099-0.2] unit increase	Illumina [13429980] (imputed)	N
598	chr6_mcf_hap5	1764013	1764014	rs1264544	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	334,944 European ancestry, NR ancestry individuals	NA	6p22.1		rs1264544-?	NR	5E-8				Affymetrix [NR] (imputed)	N
598	chr6_mcf_hap5	1764013	1764014	rs1264544	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	6p22.1		rs1264544-C	0.667	1E-12				Affymetrix [10369434] (imputed)	N
598	chr6_mcf_hap5	1767591	1767592	rs3094717	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p22.1	NR	rs3094717-?	NR	6E-7		0.0733	[0.044-0.102] unit decrease	Illumina [at least 560000] (imputed)	N
598	chr6_mcf_hap5	1769087	1769088	rs139215104	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mumps	31,227 European ancestry cases, 54,153 European ancestry controls	NA	6p22.1	NR	rs139215104-?	NR	6E-11		0.5908	[0.41-0.77] unit increase	Illumina [at least 560000] (imputed)	N
598	chr6_mcf_hap5	1772025	1772026	rs9261899	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	6p22.1	NR	rs9261899-?	NR	9E-33		11.926	NR z score increase	Illumina [at least 830937] (imputed)	N
598	chr6_mcf_hap5	1773435	1773436	rs76241157	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lung cancer	3,791 European ancestry cases, 489,012 European ancestry controls, 4,444 East Asian ancestry cases, 174,282 East Asian ancestry controls	NA	6p22.1		rs76241157-T	NR	1E-8		0.1454	[0.095-0.196] unit increase	Affymetrix, Illumina [25845450] (imputed)	N
598	chr6_mcf_hap5	1773819	1773820	rs3130127	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	MICC	rs3130127-A	NR	8E-10		6.154	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
598	chr6_mcf_hap5	1780233	1780234	rs114810763	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6p22.1		rs114810763-A	0.1549	2E-9		0.0121	[0.0082-0.016] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
598	chr6_mcf_hap5	1780233	1780234	rs114810763	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6p22.1	Intergenic	rs114810763-A	0.1549	6E-12	(MTAG)	0.0129	[0.0092-0.0166] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
598	chr6_mcf_hap5	1782605	1782606	rs149543464	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms (MTAG)	354,862 European ancestry individuals	NA	6p22.1	NR	rs149543464-G	0.8838	1E-10		0.0217	[0.015-0.028] unit increase	Illumina [NR] (imputed)	N
598	chr6_mcf_hap5	1782605	1782606	rs149543464	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms	354,862 European ancestry individuals	NA	6p22.1	NR	rs149543464-G	0.8838	8E-9		0.0213	[0.014-0.029] unit increase	Illumina [NR] (imputed)	N
598	chr6_mcf_hap5	1790637	1790638	rs1269556	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	6p22.1	NR	rs1269556-?	NR	2E-6		0.0083093	[0.0049-0.0117] unit decrease	Affymetrix [805426] (imputed)	N
598	chr6_mcf_hap5	1791099	1791100	rs3132645	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p22.1	RNF39, TRIM31, FLOT1, PPP1R18, HLA-J, ZNRD1-AS1_3, ZNRD1, TRIM26, HCG17, TRIM26BP, HLA-L, TRIM39-RPP21, RPP21, HCG19P, ATAT1, NRM, IER3, HCG20, LINC00243, ZNRD1-AS1, HCG4P3, PPP1R11, TRIM31-AS1, TRIM40, TRIM10, TRIM15, PAIP1P1, XXbac-BPG283O16.9, HCG18, TRIM39, HLA-N, UBQLN1P1, MICC, SUCLA2P1, GNL1, ABCF1, PPP1R10, PTMAP1, MRPS18B, C6orf136, AL662800.2, DHX16, AL662797.1, XXbac-BPG252P9.9, TUBB, MDC1, Y_RNA, XXbac-BPG252P9.10, RN7SL353P	rs3132645-C	0.09428285	4E-22	(EA, MHC class I polypeptide-related sequence B)	0.7147	[0.57-0.86] unit decrease	Affymetrix [509946]	N
598	chr6_mcf_hap5	1793753	1793754	rs1264516	33106546	Johnson TA	2020-10-26	J Hum Genet	Association of an IGHV3-66 gene variant with Kawasaki disease.	Kawasaki disease	1,276 East Asian ancestry cases, 5,086 East Asian ancestry controls	2,152 East Asian ancestry cases, 2,751 East Asian ancestry controls	6p22.1	LOC105375012	rs1264516-A	NR	4E-11		1.24	[1.16-1.32]	Affymetrix, Illumina [6265045] (imputed)	N
598	chr6_mcf_hap5	1814040	1814041	rs3130141	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p22.1	RPP21, HLA-E	rs3130141-A	0.283	4E-23				Illumina [118177]	N
599	chr6_mcf_hap5	1839927	1839928	rs1264457	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	6p22.1	HLA-E	rs1264457-A	0.60324	8E-24		0.02398372	[0.019-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
599	chr6_mcf_hap5	1839927	1839928	rs1264457	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p22.1	HLA-E	rs1264457-G		4E-11		0.015	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
599	chr6_mcf_hap5	1850650	1850651	rs3131115	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder	29,475 European ancestry cases, 63,482 European ancestry controls	NA	6p21.33	NR	rs3131115-C	0.671942	1E-7		1.0845987	[1.05-1.12]	Affymetrix [7791636] (imputed)	N
599	chr6_mcf_hap5	1850650	1850651	rs3131115	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	6p21.33	HLA-E, GNL1	rs3131115-T	NR	2E-6		0.0966506	[0.057-0.136] unit decrease	Illumina [at least 950000] (imputed)	N
599	chr6_mcf_hap5	1853379	1853380	rs2429657	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.33		rs2429657-G	0.21809299999999998	2E-8		1.0286343	[1.02-1.04]	Affymetrix, Illumina [9851866] (imputed)	N
599	chr6_mcf_hap5	1861772	1861773	rs140668832	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs140668832-?		2E-9		1.07	[1.05-1.09]	Illumina [7645193] (imputed)	N
599	chr6_mcf_hap5	1861772	1861773	rs140668832	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs140668832-?		3E-10		1.92	[1.57-2.35]	Illumina [7645193] (imputed)	N
599	chr6_mcf_hap5	1864334	1864335	rs28894081	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p21.33	NR	rs28894081-A	0.0655	1E-7		0.0126	[0.0079-0.0173] unit increase	NR [7666894] (imputed)	N
599	chr6_mcf_hap5	1865347	1865348	rs181383036	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p21.33	NR	rs181383036-?	NR	2E-12		0.3665	[0.27-0.47] unit increase	Illumina [at least 560000] (imputed)	N
599	chr6_mcf_hap5	1865886	1865887	rs10484552	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p21.33	NR	rs10484552-?	NR	8E-10		0.0986	[0.067-0.13] unit decrease	Illumina [at least 560000] (imputed)	N
599	chr6_mcf_hap5	1869154	1869155	rs143654430	30111768	Yao C	2018-08-15	Nat Commun	Genome-wide mapping of plasma protein QTLs identifies putatively causal genes and pathways for cardiovascular disease.	Blood protein levels	6861 European ancestry individuals	4298 European ancestry individuals	6p21.33		rs143654430-T	0.981	7E-18	(C2)	0.639	unit increase	Affymetrix, Illumina [8509364] (imputed)	N
599	chr6_mcf_hap5	1874884	1874885	rs139629463	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mumps	31,227 European ancestry cases, 54,153 European ancestry controls	NA	6p21.33	NR	rs139629463-?	NR	4E-6		0.3	[0.17-0.43] unit increase	Illumina [at least 560000] (imputed)	N
599	chr6_mcf_hap5	1876315	1876316	rs149608588	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p21.33	NR	rs149608588-?	NR	1E-6		0.2523	[0.15-0.36] unit decrease	Illumina [at least 560000] (imputed)	N
599	chr6_mcf_hap5	1877531	1877532	rs41265607	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.33		rs41265607-C	0.801	3E-28				Affymetrix [10369434] (imputed)	N
599	chr6_mcf_hap5	1877531	1877532	rs41265607	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs41265607-C	0.801	4E-34				Affymetrix [10369434] (imputed)	N
599	chr6_mcf_hap5	1877589	1877590	rs147537141	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	6p21.33		rs147537141-G	0.014219	2E-16		0.08431184	[0.064-0.104] unit increase	Affymetrix [93095623] (imputed)	N
599	chr6_mcf_hap5	1890809	1890810	rs3130117	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p21.33	NR	rs3130117-?	NR	2E-7		0.0742	[0.046-0.102] unit increase	Illumina [at least 560000] (imputed)	N
599	chr6_mcf_hap5	1893023	1893024	rs2524222	27479909	Hyde CL	2016-08-01	Nat Genet	Identification of 15 genetic loci associated with risk of major depression in individuals of European descent.	Major depressive disorder	84,847 European ancestry cases, 241,266 European ancestry controls	45,773 European ancestry cases, 106,354 European ancestry controls	6p21.33	GNL1	rs2524222-T	0.219809	1E-6		0.0335	[0.02-0.047] unit increase	Illumina [1220000] (imputed)	N
599	chr6_mcf_hap5	1910507	1910508	rs3130040	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	6p21.33	PRR3	rs3130040-T	NR	2E-8		0.0366187	[0.024-0.049] unit increase	Illumina [13520550] (imputed)	N
599	chr6_mcf_hap5	1919459	1919460	rs3132613	21900946	Nakabayashi K	2011-09-08	J Hum Genet	Identification of independent risk loci for Graves' disease within the MHC in the Japanese population.	Graves' disease	1,119 Japanese ancestry cases, 2,718 Japanese ancestry controls	432 Japanese ancestry cases, 1,157 Japanese ancestry controls	6p21.33	MHC	rs3132613-C	0.25	1E-13		1.43	[1.30-1.57]	Perlegen [268068]	N
599	chr6_mcf_hap5	1921058	1921059	rs4148247	26379185	Garcia-Etxebarria K	2015-09-17	PLoS One	No Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity.	Mild influenza (H1N1) infection	107 European ancestry mild cases, 549 European ancestry population controls	NA	6p21.33	GCN20, ABCF1	rs4148247-?	0.0167	1E-8		5.963	[5.27-6.66]	Affymetrix [547296]	N
599	chr6_mcf_hap5	1921805	1921806	rs2269710	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	IgM levels	14,442 Icelandic ancestry individuals	2,157 Swedish ancestry individuals	6p21.33	ABCF1	rs2269710-C	0.3579	3E-20		0.11	NR SD units increase	Illumina [21568490] (imputed)	N
599	chr6_mcf_hap5	1926254	1926255	rs3132610	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p21.33	NR	rs3132610-G	0.1198	1E-6	(EA)	0.0499	[0.03-0.07] unit decrease	Illumina [~ 11800000] (imputed)	N
599	chr6_mcf_hap5	1947708	1947709	rs9262120	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p21.33	ABCF1	rs9262120-A	NR	3E-8		5.562	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
599	chr6_mcf_hap5	1948262	1948263	rs3095276	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	6p21.33	NR	rs3095276-?	NR	5E-6		0.0784	[0.045-0.112] unit increase	Illumina [at least 560000] (imputed)	N
599	chr6_mcf_hap5	1953325	1953326	rs1264423	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.33		rs1264423-T	0.489	1E-18				Affymetrix [10369434] (imputed)	N
599	chr6_mcf_hap5	1953325	1953326	rs1264423	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	6p21.33	PPP1R10	rs1264423-C	0.5121	6E-16		0.02836222	[0.021-0.035] unit decrease	Affymetrix [~ 2500000] (imputed)	N
599	chr6_mcf_hap5	1955696	1955697	rs9262122	30169916	Sun Y	2018-08-31	J Eur Acad Dermatol Venereol	Investigation of the Predisposing Factor of Pemphigus and its clinical subtype through a Genome-wide association and next generation sequence analysis.	Pemphigus vulgaris	101 Chinese ancestry cases, 844 Chinese ancestry controls	at least 56 Chinese ancestry cases, up to 996 Chinese ancestry controls	6p21.33	NR	rs9262122-?	NR	5E-6	(adjusted for HLA-DRB1*14)	2.73		Illumina [5546030] (imputed)	N
599	chr6_mcf_hap5	1958635	1958636	rs1264419	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	6p21.33	NR	rs1264419-C	0.5128	9E-10		1.037	[1.03-1.05]	Affymetrix, Illumina [NR] (imputed)	N
599	chr6_mcf_hap5	1960189	1960190	rs2267637	33002439	Jin G	2020-10-01	Lancet Oncol	Genetic risk, incident gastric cancer, and healthy lifestyle: a meta-analysis of genome-wide association studies and prospective cohort study.	Gastric cancer	10,254 Han Chinese ancestry cases, 10,914 Han Chinese ancestry controls	NA	6p21.33	NR	rs2267637-T	0.31	3E-6		1.11	NR	Affymetrix, Illumina [6957974] (imputed)	N
599	chr6_mcf_hap5	1965988	1965989	rs55777621	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6p21.33	NR	rs55777621-?	NR	4E-12				Affymetrix [~ 8270000] (imputed)	N
600	chr6_mcf_hap5	1971241	1971242	rs111296996	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	6p21.33	MRPS18B	rs111296996-A	0.9872	5E-6		0.2039	[0.12-0.29] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
600	chr6_mcf_hap5	1975383	1975384	rs148828689	32599975	Bae JS	2020-06-30	Cancer Res Treat	Genome-Wide Association Study for the Identification of Novel Genetic Variants Associated with the Risk of Neuroblastoma in Korean Children.	Neuroblastoma (pediatric)	296 Korean ancestry child cases, 1,000 Korean ancestry adult controls	NA	6p21.33	MRPS18B	rs148828689-?		4E-18		7.8	[4.7-12.9]	Illumina [NR] (imputed)	N
600	chr6_mcf_hap5	1983087	1983088	rs12665339	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.33		rs12665339-A	0.85	3E-28				Affymetrix [10369434] (imputed)	N
600	chr6_mcf_hap5	1983087	1983088	rs12665339	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	6p21.33	ATAT1	rs12665339-G	0.17	6E-9		1.06	[1.04-1.08]	Illumina [20370935] (imputed)	N
600	chr6_mcf_hap5	2009101	2009102	rs1076829	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	DHX16	rs1076829-C	NR	4E-8		0.0176091	[0.011-0.024] unit decrease	Affymetrix [127266] (imputed)	N
600	chr6_mcf_hap5	2010137	2010138	rs1076828	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	DHX16	rs1076828-A	NR	2E-8		0.0180204	[0.012-0.024] unit decrease	Affymetrix [323858] (imputed)	N
600	chr6_mcf_hap5	2010842	2010843	rs74917683	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p21.33	NR	rs74917683-?	NR	2E-11		0.1491	[0.1-0.19] unit increase	Illumina [at least 560000] (imputed)	N
600	chr6_mcf_hap5	2015477	2015478	rs55740398	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	6p21.33		rs55740398-A	0.0027098	6E-6		0.29793	[0.17-0.43] unit increase	Affymetrix [15580782] (imputed)	N
600	chr6_mcf_hap5	2015760	2015761	rs3094097	31272903	Sunadome H	2019-07-01	Allergol Int	Correlation between eosinophil count, its genetic background and body mass index: The Nagahama Study.	Eosinophil counts	4,206 East Asian ancestry individuals	NA	6p21.33	NR	rs3094097-G	0.22	2E-9		0.1545	NR unit increase	Illumina [103680] (imputed)	N
600	chr6_mcf_hap5	2031910	2031911	rs9262142	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p21.33	NR	rs9262142-A	0.1166	3E-6	(EA)	0.0489	[0.028-0.069] unit decrease	Illumina [~ 11800000] (imputed)	N
600	chr6_mcf_hap5	2032202	2032203	rs2394392	31272903	Sunadome H	2019-07-01	Allergol Int	Correlation between eosinophil count, its genetic background and body mass index: The Nagahama Study.	Eosinophil counts	4,650 East Asian ancestry individuals	NA	6p21.33	NR	rs2394392-G	0.18	2E-8		0.1481	NR unit increase	Illumina [103680] (imputed)	N
600	chr6_mcf_hap5	2034665	2034666	rs9262143	33909500	Moll M	2021-04-28	Am J Physiol Lung Cell Mol Physiol	A Systematic Analysis of Protein-altering Exonic Variants in Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease	up to 31,465 European ancestry cases, up to 203,688 European ancestry controls, up to 1,413 African ancestry cases, up to 6,080 African ancestry controls, up to 287 East Asian ancestry cases, up to 7,484 East Asian ancestry controls, up to 61 Hispanic cases, up to 613 Hispanic controls	NA	6p21.33	PPP1R18	rs9262143-T	0.14	1E-13		1.11	[1.08 -1.15]	Illumina [at least 109036]	N
600	chr6_mcf_hap5	2034665	2034666	rs9262143	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p21.33	PPP1R18	rs9262143-T		3E-28		0.036	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
600	chr6_mcf_hap5	2034666	2034667	rs138394556	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	6p21.33	NRM	rs138394556-A	0.1475	2E-8		0.018794373	[0.012-0.025] unit decrease	Affymetrix [11515109] (imputed)	N
600	chr6_mcf_hap5	2038731	2038732	rs2269705	27151647	Chen G	2016-05-05	Addict Biol	An association study revealed substantial effects of dominance, epistasis and substance dependence co-morbidity on alcohol dependence symptom count.	Alcohol dependence symptom count	2,605 European ancestry individuals, 1,233 African American individuals	NA	6p21.33	NRM	rs2269705-?		3E-10	(additive)	0.266	[0.18-0.35] unit decrease	Illumina [974863]	N
600	chr6_mcf_hap5	2038899	2038900	rs3094092	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	6p21.33	NRM	rs3094092-T	NR	2E-8		0.036598	[0.024-0.049] unit increase	Illumina [13520550] (imputed)	N
600	chr6_mcf_hap5	2044949	2044950	rs137934746	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p21.33	NR	rs137934746-?	NR	1E-6		0.2471	[0.15-0.35] unit decrease	Illumina [at least 560000] (imputed)	N
600	chr6_mcf_hap5	2046334	2046335	rs370462350	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	6p21.33	NRM	rs370462350-?	NR	2E-9		0.375	[0.25-0.5] unit decrease	Illumina [34656550] (imputed)	N
600	chr6_mcf_hap5	2047408	2047409	rs149856401	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Stable angina pectoris	17,894 European ancestry cases, 325,132 European ancestry controls, 18,833 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	6p21.33		rs149856401-G	NR	1E-13		0.1724	[0.13-0.22] unit increase	Affymetrix, Illumina [20456336] (imputed)	N
600	chr6_mcf_hap5	2048329	2048331	rs147637345	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p21.33	NR	rs147637345-?	NR	1E-7		0.0819	[0.052-0.112] unit increase	Illumina [at least 560000] (imputed)	N
600	chr6_mcf_hap5	2048329	2048331	rs147637345	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	6p21.33	NR	rs147637345-?	NR	4E-6		0.0842	[0.048-0.12] unit decrease	Illumina [at least 560000] (imputed)	N
600	chr6_mcf_hap5	2048552	2048553	rs9468811	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs9468811-C	0.937946818961625	6E-7	(IGP19)	0.3471	[0.21-0.48] unit decrease	Illumina [~ 2500000] (imputed)	N
600	chr6_mcf_hap5	2048552	2048553	rs9468811	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs9468811-C	0.937725588025022	3E-6	(IGP74)	0.3262	[0.19-0.46] unit decrease	Illumina [~ 2500000] (imputed)	N
600	chr6_mcf_hap5	2048552	2048553	rs9468811	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs9468811-C	0.937641317877842	2E-6	(IGP75)	0.3304	[0.19-0.47] unit decrease	Illumina [~ 2500000] (imputed)	N
600	chr6_mcf_hap5	2048552	2048553	rs9468811	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs9468811-C	0.937418950958538	3E-6	(IGP69)	0.3228	[0.19-0.46] unit decrease	Illumina [~ 2500000] (imputed)	N
600	chr6_mcf_hap5	2048552	2048553	rs9468811	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs9468811-C	0.937308425901202	5E-7	(IGP76)	0.3469	[0.21-0.48] unit increase	Illumina [~ 2500000] (imputed)	N
600	chr6_mcf_hap5	2051151	2051152	rs115448006	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.33	NR	rs115448006-T	0.01	5E-11		0.599756	[0.42-0.78] unit increase	Affymetrix [up to 8900000] (imputed)	N
600	chr6_mcf_hap5	2061510	2061511	rs3094093	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs3094093-T	0.107712365538735	8E-6	(IGP65)	0.2214	[0.12-0.32] unit decrease	Illumina [~ 2500000] (imputed)	N
600	chr6_mcf_hap5	2061510	2061511	rs3094093	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs3094093-T	0.107418420152946	8E-6	(IGP2)	0.2231	[0.13-0.32] unit increase	Illumina [~ 2500000] (imputed)	N
600	chr6_mcf_hap5	2061510	2061511	rs3094093	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs3094093-T	0.107325880449438	3E-6	(IGP42)	0.2336	[0.14-0.33] unit increase	Illumina [~ 2500000] (imputed)	N
600	chr6_mcf_hap5	2067302	2067303	rs4713354	31272903	Sunadome H	2019-07-01	Allergol Int	Correlation between eosinophil count, its genetic background and body mass index: The Nagahama Study.	Eosinophil counts	4,650 East Asian ancestry individuals	NA	6p21.33	MDC1	rs4713354-C	0.216	2E-8		0.14	NR unit increase	Illumina [103680] (imputed)	N
600	chr6_mcf_hap5	2069354	2069355	rs117670375	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Gynecologic disease (multivariate analysis)	up to 7,975 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs117670375-?		1E-8	(uterine cervical cancer)			Illumina [7645193] (imputed)	N
600	chr6_mcf_hap5	2069354	2069355	rs117670375	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Gynecologic disease	7,975 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs117670375-?		1E-7		1.16	[1.10-1.22]	Illumina [7645193] (imputed)	N
600	chr6_mcf_hap5	2069354	2069355	rs117670375	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Gynecologic disease	7,315 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs117670375-?		2E-10				Illumina [7645193] (imputed)	N
600	chr6_mcf_hap5	2069354	2069355	rs117670375	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs117670375-?		2E-9		1.07	[1.05-1.09]	Illumina [7645193] (imputed)	N
600	chr6_mcf_hap5	2069354	2069355	rs117670375	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs117670375-?		3E-10		1.92	[1.57-2.35]	Illumina [7645193] (imputed)	N
600	chr6_mcf_hap5	2070309	2070310	rs3132584	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	TUBB	rs3132584-T	NR	1E-8		0.021321	[0.014-0.029] unit decrease	Affymetrix [323858] (imputed)	N
600	chr6_mcf_hap5	2070309	2070310	rs3132584	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	TUBB	rs3132584-T	NR	3E-8		0.0206734	[0.013-0.028] unit decrease	Affymetrix [127266] (imputed)	N
600	chr6_mcf_hap5	2070309	2070310	rs3132584	32989287	Cuellar-Partida G	2020-09-28	Nat Hum Behav	Genome-wide association study identifies 48 common genetic variants associated with handedness.	Left-handedness	1,766,671 European ancestry individuals	NA	6p21.33	TUBB	rs3132584-T	0.2056	6E-25		0.95483845	[NR]	Illumina [12493444] (imputed)	N
600	chr6_mcf_hap5	2075003	2075004	rs7781	33723403	Sha Z	2021-03-15	Nat Hum Behav	The genetic architecture of structural left-right asymmetry of the human brain.	Left-right brain asymmetry	32,256 European ancestry individuals	NA	6p21.33	TUBB	rs7781-G	0.24	2E-10				NR [9312144] (imputed)	N
600	chr6_mcf_hap5	2076256	2076257	rs3094128	31504236	Wiberg A	2019-09-05	Brain	Handedness, language areas and neuropsychiatric diseases: insights from brain imaging and genetics.	Handedness (non-right-handed vs right-handed)	44,631 European ancestry non-right-handed individuals, 356,567 European ancestry right-handed individuals	NA	6p21.33	TUBB, MICB, FLOT1	rs3094128-?	0.789	3E-8		1.0526316	[1.03-1.06]	NR [~ 11000000] (imputed)	N
600	chr6_mcf_hap5	2079329	2079330	rs3094127	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p21.33	FLOT1	rs3094127-A	NR	2E-8		5.644	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
600	chr6_mcf_hap5	2080423	2080424	rs1064627	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	FLOT1	rs1064627-G	NR	2E-8		0.0196765	[0.013-0.027] unit increase	Affymetrix [321016] (imputed)	N
600	chr6_mcf_hap5	2080423	2080424	rs1064627	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p21.33	NR	rs1064627-G	0.2	3E-13		1.15	[1.11-1.2]	Affymetrix [9886854] (imputed)	N
600	chr6_mcf_hap5	2080423	2080424	rs1064627	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p21.33	NR	rs1064627-G	0.2	1E-18			[NR]	Affymetrix [9886854] (imputed)	N
600	chr6_mcf_hap5	2080423	2080424	rs1064627	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p21.33	NR	rs1064627-G	0.2	2E-16		1.13	[1.1-1.16]	Affymetrix [9886854] (imputed)	N
600	chr6_mcf_hap5	2080423	2080424	rs1064627	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p21.33	NR	rs1064627-G	0.2	2E-17			[NR]	Affymetrix [9886854] (imputed)	N
600	chr6_mcf_hap5	2080423	2080424	rs1064627	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in non-current smokers	16,488 European ancestry cases, 169,688 European ancestry controls	NA	6p21.33	NR	rs1064627-G	0.2	2E-16		1.13	[1.1-1.16]	Affymetrix [9886854] (imputed)	N
600	chr6_mcf_hap5	2080423	2080424	rs1064627	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in never smokers	8,631 European ancestry cases, 120,544 European ancestry controls	NA	6p21.33	NR	rs1064627-G	0.2	1E-13		1.16	[1.11-1.2]	Affymetrix [9886854] (imputed)	N
600	chr6_mcf_hap5	2080423	2080424	rs1064627	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in ever smokers	12,446 European ancestry cases, 59,145 European ancestry controls	NA	6p21.33	NR	rs1064627-G	0.2	1E-7		1.1	[1.06-1.14]	Affymetrix [9886854] (imputed)	N
601	chr6_mcf_hap5	2190649	2190650	rs2517582	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG27H4.8	rs2517582-T	NR	3E-11		0.019246	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
601	chr6_mcf_hap5	2190649	2190650	rs2517582	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG27H4.8	rs2517582-T	NR	8E-11		0.0187782	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
601	chr6_mcf_hap5	2190649	2190650	rs2517582	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG27H4.8	rs2517582-T	NR	4E-9		0.0185153	[0.012-0.025] unit decrease	Affymetrix [323123] (imputed)	N
601	chr6_mcf_hap5	2190649	2190650	rs2517582	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG27H4.8	rs2517582-T	NR	3E-9		0.0173144	[0.012-0.023] unit increase	Affymetrix [321169] (imputed)	N
601	chr6_mcf_hap5	2190649	2190650	rs2517582	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	6p21.33	NR	rs2517582-T	0.383721	5E-18		0.0135974	[0.011-0.016] unit increase	Affymetrix [16578495] (imputed)	N
601	chr6_mcf_hap5	2190649	2190650	rs2517582	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	6p21.33	NR	rs2517582-T	0.38430299999999995	2E-18		0.0277124	[0.022-0.033] unit increase	Affymetrix [16580851] (imputed)	N
601	chr6_mcf_hap5	2190649	2190650	rs2517582	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.33	XXbac-BPG27H4.8	rs2517582-T	0.4084	4E-6		0.0319	[0.018-0.045] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
601	chr6_mcf_hap5	2190649	2190650	rs2517582	28468790	Agopian AJ	2017-06-01	Circ Cardiovasc Genet	Genome-Wide Association Studies and Meta-Analyses for Congenital Heart Defects.	Conotruncal heart defects (maternal effects)	up to 838 European ancestry trios	NA	6p21.33	GTF2H4, VARS2	rs2517582-?	NR	3E-7		1.174787	[1.104793-1.249214]	Illumina [at least 4756722] (imputed)	N
601	chr6_mcf_hap5	2191943	2191944	rs2517580	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG27H4.8	rs2517580-A	NR	4E-8		0.0175646	[0.011-0.024] unit increase	Affymetrix [319769] (imputed)	N
601	chr6_mcf_hap5	2199765	2199766	rs2844662	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.33		rs2844662-C	0.624	2E-43				Affymetrix [10369434] (imputed)	N
601	chr6_mcf_hap5	2200234	2200235	rs139507938	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1a levels	3,522 Finnish ancestry individuals	NA	6p21.33	NR	rs139507938-G	NR	7E-6		0.907	[0.51-1.3] SD units increase	NR [10700000] (imputed)	N
601	chr6_mcf_hap5	2202259	2202260	rs2263298	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p21.33	NR	rs2263298-?	NR	3E-9		0.0842	[0.056-0.112] unit decrease	Illumina [at least 560000] (imputed)	N
601	chr6_mcf_hap5	2205722	2205723	rs2844660	28468790	Agopian AJ	2017-06-01	Circ Cardiovasc Genet	Genome-Wide Association Studies and Meta-Analyses for Congenital Heart Defects.	Congenital heart disease (maternal effect)	1,119 European ancestry trios	NA	6p21.33	intergenic	rs2844660-?	NR	1E-6		1.365322	[1.204119-1.548106]	Illumina [at least 4756722] (imputed)	N
601	chr6_mcf_hap5	2206093	2206094	rs11759095	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	6p21.33	NR	rs11759095-?	NR	1E-14		7.7	NR z score decrease	Illumina [at least 830937] (imputed)	N
601	chr6_mcf_hap5	2206413	2206414	rs758778	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.33		rs758778-T	0.759	4E-32				Affymetrix [10369434] (imputed)	N
601	chr6_mcf_hap5	2206413	2206414	rs758778	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p21.33		rs758778-T	0.759	3E-25				Affymetrix [10369434] (imputed)	N
601	chr6_mcf_hap5	2214028	2214029	rs2535326	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	RN7SKP186	rs2535326-T	NR	1E-10		0.0207397	[0.014-0.027] unit increase	Affymetrix [323858] (imputed)	N
601	chr6_mcf_hap5	2214028	2214029	rs2535326	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	RN7SKP186	rs2535326-T	NR	3E-9		0.019109	[0.013-0.025] unit increase	Affymetrix [127266] (imputed)	N
601	chr6_mcf_hap5	2214084	2214085	rs3130792	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DDR1	5,364 Icelandic ancestry individuals	NA	6p21.33		rs3130792-T	0.4372	7E-54		0.279081	[0.24-0.31] unit increase	Illumina [7506463] (imputed)	N
601	chr6_mcf_hap5	2220001	2220002	rs2535341	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p21.33	DDR1-AS1	rs2535341-C	NR	2E-8		0.0208511	[0.014-0.028] unit decrease	Affymetrix [323858] (imputed)	N
601	chr6_mcf_hap5	2227522	2227523	rs1264332	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	6p21.33	NR	rs1264332-C	0.35264300000000004	2E-22		0.0233666	[0.019-0.027] unit increase	Affymetrix [16583148] (imputed)	N
602	chr6_mcf_hap5	2230209	2230210	rs7756521	20041166	Fellay J	2009-12-24	PLoS Genet	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA		VARS2, DDR1, DPCR1	rs7756521-?	NR	1E-6	(progression)			Illumina [NR]	N
602	chr6_mcf_hap5	2231080	2231081	rs885910	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	DDR1	rs885910-T	NR	9E-9		0.0184374	[0.012-0.025] unit decrease	Affymetrix [323858] (imputed)	N
602	chr6_mcf_hap5	2231080	2231081	rs885910	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	DDR1	rs885910-T	NR	4E-8		0.0176635	[0.011-0.024] unit decrease	Affymetrix [127266] (imputed)	N
602	chr6_mcf_hap5	2239850	2239851	rs1264322	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking initiation (ever regular vs never regular)	up to 433,216 European ancestry individuals	NA	6p21.33	DDR1	rs1264322-A	0.146	2E-8		0.0171	[0.011-0.023] unit decrease	Illumina [~ 250000] (imputed)	N
602	chr6_mcf_hap5	2240210	2240211	rs7743661	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p21.33	DDR1	rs7743661-C	0.25	1E-6	(Turkish)	1.62	[1.33-1.97]	Illumina [up to 547389]	N
602	chr6_mcf_hap5	2255457	2255458	rs111782145	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	6p21.33	CDSN, DPCR1, GTF2H4	rs111782145-C	NR	2E-8	(Chinese)	1.2300123	[1.16-1.3]	Affymetrix, Illumina [up to 5107227] (imputed)	N
602	chr6_mcf_hap5	2258106	2258107	rs1052693	23028341	Yang X	2012-09-13	PLoS Genet	Genome-wide association study for serum complement C3 and C4 levels in healthy Chinese subjects.	Complement C3 and C4 levels	1,999 Han Chinese ancestry male individuals	1,496 Han Chinese ancestry male individuals	6p21.33	HLA-A	rs1052693-G	0.36	3E-48	(Serum level of C4)	0.1	[0.080-0.120] g/L increase	Illumina [1940245] (imputed)	N
602	chr6_mcf_hap5	2261590	2261591	rs886420	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p21.33	GTF2H4	rs886420-A	0.311	2E-24				Illumina [118177]	N
602	chr6_mcf_hap5	2261941	2261942	rs1264308	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Squamous cell lung carcinoma	8,350 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	6p21.33	NR	rs1264308-T	NR	6E-10		1.29	[1.19-1.40]	NR [NR] (imputed)	N
602	chr6_mcf_hap5	2261941	2261942	rs1264308	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Non-small cell lung cancer	27,120 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	6p21.33	NR	rs1264308-T	NR	2E-7		1.16	[1.1-1.23]	NR [NR] (imputed)	N
602	chr6_mcf_hap5	2266146	2266147	rs146114215	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.33		rs146114215-G	0.995	1E-22				Affymetrix [10369434] (imputed)	N
602	chr6_mcf_hap5	2266146	2266147	rs146114215	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	6p21.33		rs146114215-G	0.995	9E-15				Affymetrix [10369434] (imputed)	N
602	chr6_mcf_hap5	2266146	2266147	rs146114215	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	6p21.33		rs146114215-G	0.995	1E-16				Affymetrix [10369434] (imputed)	N
602	chr6_mcf_hap5	2266146	2266147	rs146114215	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs146114215-G	0.995	5E-26				Affymetrix [10369434] (imputed)	N
602	chr6_mcf_hap5	2269406	2269407	rs118124843	31537649	Salem RM	2019-09-19	J Am Soc Nephrol	Genome-Wide Association Study of Diabetic Kidney Disease Highlights Biology Involved in Glomerular Basement Membrane Collagen.	Microalbuminuria in type 1 diabetes	2,447 European ancestry cases, 12,113 European ancestry controls	NA	6p21.33	DDR1, VARS2	rs118124843-T	0.011	4E-8		3.79	[NR]	Illumina [up to 49000000] (imputed)	N
602	chr6_mcf_hap5	2272441	2272442	rs2074506	33909500	Moll M	2021-04-28	Am J Physiol Lung Cell Mol Physiol	A Systematic Analysis of Protein-altering Exonic Variants in Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease	up to 31,465 European ancestry cases, up to 203,688 European ancestry controls, up to 1,413 African ancestry cases, up to 6,080 African ancestry controls, up to 287 East Asian ancestry cases, up to 7,484 East Asian ancestry controls, up to 61 Hispanic cases, up to 613 Hispanic controls	NA	6p21.33	VARS2	rs2074506-G	0.65	3E-7		1.06	[1.03 -1.08]	Illumina [at least 109036]	N
602	chr6_mcf_hap5	2272829	2272830	rs753725	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	6p21.33	VARS2	rs753725-T	0.4062	1E-9		0.0205	[0.014-0.027] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
602	chr6_mcf_hap5	2272829	2272830	rs753725	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	6p21.33	VARS2	rs753725-T	0.4562	3E-7		0.020761	[0.013-0.029] mg/dL increase	Affymetrix, Illumina [8217339] (imputed)	N
602	chr6_mcf_hap5	2279712	2279713	rs2532929	28877031	Zhang G	2017-09-07	N Engl J Med	Genetic Associations with Gestational Duration and Spontaneous Preterm Birth.	Gestational age at birth (maternal effect)	43,568 European ancestry mothers	8,643 European ancestry mothers	6p21.33	SFTA2, VARS2, DPCR1	rs2532929-G	0.397	2E-6		0.622	[NR] unit decrease	Illumina [15635593] (imputed)	N
602	chr6_mcf_hap5	2281588	2281589	rs3095152	32771030	Tangtanatakul P	2020-08-08	Arthritis Res Ther	Meta-analysis of genome-wide association study identifies FBN2 as a novel locus associated with systemic lupus erythematosus in Thai population.	Systemic lupus erythematosus	487 Thai cases, 1,606 Thai controls	405 Thai cases, 1,590 Thai controls	6p21.33	SFTA2	rs3095152-A	0.03	6E-7		2.4584	[NR]	Illumina [421909] (imputed)	N
602	chr6_mcf_hap5	2282032	2282033	rs2253705	35215271	Almandil NB	2022-01-27	Pharmaceuticals (Basel)	Integration of Transcriptome and Exome Genotyping Identifies Significant Variants with Autism Spectrum Disorder.	Autism spectrum disorder	70 Arab ancestry cases, 132 Arab ancestry controls	NA	6p21.33	NA	rs2253705-A	0.125	4E-6		3.706	[2.086-6.583]	Illumina [243345]	N
602	chr6_mcf_hap5	2282366	2282367	rs2253718	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	Y_RNA	rs2253718-T	NR	3E-11		0.019062	[0.013-0.025] unit decrease	Affymetrix [319769] (imputed)	N
602	chr6_mcf_hap5	2282366	2282367	rs2253718	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	Y_RNA	rs2253718-T	NR	8E-10		0.0195334	[0.013-0.026] unit decrease	Affymetrix [323858] (imputed)	N
602	chr6_mcf_hap5	2282366	2282367	rs2253718	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	Y_RNA	rs2253718-T	NR	3E-10		0.0180687	[0.012-0.024] unit decrease	Affymetrix [319769] (imputed)	N
602	chr6_mcf_hap5	2282366	2282367	rs2253718	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	Y_RNA	rs2253718-T	NR	3E-8		0.0176831	[0.011-0.024] unit decrease	Affymetrix [127266] (imputed)	N
602	chr6_mcf_hap5	2282366	2282367	rs2253718	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	Y_RNA	rs2253718-T	NR	5E-11		0.0204362	[0.014-0.027] unit increase	Affymetrix [323123] (imputed)	N
602	chr6_mcf_hap5	2282366	2282367	rs2253718	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	Y_RNA	rs2253718-T	NR	3E-11		0.0191888	[0.014-0.025] unit decrease	Affymetrix [321169] (imputed)	N
602	chr6_mcf_hap5	2285384	2285384	rs539017487	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	6p21.33	NR	rs539017487-GT	0.365568	4E-26		0.0391332	[0.033-0.045] unit increase	Affymetrix [16577424] (imputed)	N
602	chr6_mcf_hap5	2286211	2286212	rs2844649	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	Y_RNA	rs2844649-A	NR	1E-10		0.0311282	[0.022-0.041] unit increase	Affymetrix [323123] (imputed)	N
602	chr6_mcf_hap5	2286211	2286212	rs2844649	32589924	Bi W	2020-06-23	Am J Hum Genet	A Fast and Accurate Method for Genome-Wide Time-to-Event Data Analysis and Its Application to UK Biobank.	Asthma (time to event)	25,240 British ancestry cases, 257,631 British ancestry controls	NA	6p21.33	SFTA2, DPCR149	rs2844649-?	NR	4E-8				NR [~ 24000000] (imputed)	N
602	chr6_mcf_hap5	2287252	2287253	rs3132571	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs3132571-A	0.623	3E-58				Affymetrix [10369434] (imputed)	N
602	chr6_mcf_hap5	2291348	2291349	rs2243739	33602968	Skuladottir AT	2021-02-18	Sci Rep	A meta-analysis uncovers the first sequence variant conferring risk of Bell's palsy.	Bell's palsy	4,714 European ancestry cases, 1,011,520 European ancestry controls	NA	6p21.33	DPCR1	rs2243739-C	0.3504	5E-6		0.90366	NR	Affymetrix, Illumina [30341632] (imputed)	N
602	chr6_mcf_hap5	2295399	2295400	rs3132581	23453885	Smoller JW	2013-02-27	Lancet	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NA	6p21.33	NR	rs3132581-G		2E-7	(Modelling analysis)			NR [1252901] (imputed)	N
602	chr6_mcf_hap5	2296493	2296494	rs3130781	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	DPCR1, HCG21	rs3130781-C	NR	3E-10		0.0233694	[0.016-0.031] unit increase	Affymetrix [323123] (imputed)	N
602	chr6_mcf_hap5	2296692	2296693	rs2517451	33649182	Penova M	2021-03-01	Proc Natl Acad Sci U S A	Genome wide association study of HTLV-1-associated myelopathy/tropical spastic paraparesis in the Japanese population.	HTLV-1 associated myelopathy	731 Japanese ancestry cases, 846 Japanese ancestry controls	NA	6p21.33		rs2517451-C	0.04	2E-9		2.69	[1.95-3.71]	Illumina [126394]	N
602	chr6_mcf_hap5	2305870	2305871	rs9368648	33766035	Wakim V	2021-03-25	BMC Med Genomics	New susceptibility alleles associated with severe coronary artery stenosis in the Lebanese population.	Severe coronary stenosis (family history of CAD interaction)	1,734 Middle Eastern ancestry cases, 757 Middle Eastern ancestry controls	NA	6p21.33	intergenic	rs9368648-T	NR	1E-9				Illumina [NR]	N
602	chr6_mcf_hap5	2305870	2305871	rs9368648	33766035	Wakim V	2021-03-25	BMC Med Genomics	New susceptibility alleles associated with severe coronary artery stenosis in the Lebanese population.	Severe coronary stenosis	1,734 Middle Eastern ancestry cases, 757 Middle Eastern ancestry controls	NA	6p21.33	intergenic	rs9368648-T	NR	3E-9				Illumina [NR]	N
602	chr6_mcf_hap5	2308460	2308461	rs3095156	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA	6p21.33	NR	rs3095156-?	NR	7E-6		0.0497	[0.028-0.071] unit decrease	Illumina [at least 560000] (imputed)	N
602	chr6_mcf_hap5	2313790	2313791	rs3131934	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p21.33	NR	rs3131934-?	NR	6E-8		5.421	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
602	chr6_mcf_hap5	2314169	2314170	rs138678612	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	6p21.33	NR	rs138678612-G	0.0217	1E-8		1.1235955	[1.08-1.16]	Affymetrix, Illumina [NR] (imputed)	N
602	chr6_mcf_hap5	2315740	2315741	rs3095089	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCG21	rs3095089-T	NR	3E-13		0.0287765	[0.021-0.036] unit decrease	Affymetrix [323858] (imputed)	N
602	chr6_mcf_hap5	2315740	2315741	rs3095089	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HCG21	rs3095089-T	NR	4E-12		0.0272715	[0.02-0.035] unit decrease	Affymetrix [127266] (imputed)	N
602	chr6_mcf_hap5	2315740	2315741	rs3095089	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p21.33	NR	rs3095089-?	NR	8E-13		0.0835	[0.061-0.106] unit decrease	Illumina [at least 560000] (imputed)	N
602	chr6_mcf_hap5	2315810	2315811	rs3131933	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.33		rs3131933-T	0.474	5E-17				Affymetrix [10369434] (imputed)	N
602	chr6_mcf_hap5	2315810	2315811	rs3131933	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.33	NR	rs3131933-T	0.808	7E-9	(conditional)	0.891	[0.85-0.93]	Illumina [11270530] (imputed)	N
602	chr6_mcf_hap5	2318608	2318609	rs3095086	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCG21	rs3095086-A	NR	1E-10		0.0225432	[0.016-0.029] unit decrease	Affymetrix [323858] (imputed)	N
602	chr6_mcf_hap5	2318608	2318609	rs3095086	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HCG21	rs3095086-A	NR	6E-10		0.0216316	[0.015-0.028] unit decrease	Affymetrix [127266] (imputed)	N
602	chr6_mcf_hap5	2319677	2319678	rs3131781	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p21.33	NR	rs3131781-G	0.1445	9E-9		0.0097	[0.0064-0.013] unit decrease	NR [7666894] (imputed)	N
602	chr6_mcf_hap5	2320828	2320829	rs9368649	30626913	Amare AT	2019-01-09	Mol Psychiatry	Bivariate genome-wide association analyses of the broad depression phenotype combined with major depressive disorder, bipolar disorder or schizophrenia reveal eight novel genetic loci for depression.	Broad depression or major depressive disorder (self-reported)	9,240 European ancestry broad depression cases, 9,519 European ancestry broad depression controls, 51,258 European ancestry individuals, 75,607 European ancestry self-reported major depressive disorder cases, 231,747 European ancestry self-reported major depressive disorder controls	322,580 individuals	6p21.33	MUC21	rs9368649-A	0.14	1E-8				Affymetrix, Illumina [at least 918921] (imputed)	N
602	chr6_mcf_hap5	2320828	2320829	rs9368649	23284291	Hancock DB	2012-12-20	PLoS Genet	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (smoking interaction)	50,047 European ancestry individuals	NA	6p21.33	MUC21, DPCR1	rs9368649-A	NR	1E-7	(FEV1/FVC, Pack-years)			NR [~ 2500000] (imputed)	N
602	chr6_mcf_hap5	2320828	2320829	rs9368649	23284291	Hancock DB	2012-12-20	PLoS Genet	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (smoking interaction)	50,047 European ancestry individuals	NA	6p21.33	MUC21, DPCR1	rs9368649-A	NR	1E-7	(FEV1/FVC, Ever-smoking)			NR [~ 2500000] (imputed)	N
602	chr6_mcf_hap5	2322332	2322333	rs2530710	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs2530710-?		4E-7		1.0416667	[1.03-1.06]	Illumina [7645193] (imputed)	N
602	chr6_mcf_hap5	2322332	2322333	rs2530710	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs2530710-?		1E-7		1.5151515	[1.3-1.75]	Illumina [7645193] (imputed)	N
602	chr6_mcf_hap5	2327570	2327571	rs34853064	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.33	NR	rs34853064-?	NR	6E-9				Affymetrix [~ 8270000] (imputed)	N
602	chr6_mcf_hap5	2329454	2329455	rs3094084	25827949	Kunz M	2015-05-04	Exp Dermatol	Genome-wide association study identifies new susceptibility loci for cutaneous lupus erythematosus.	Cutaneous lupus erythematosus	151 European ancestry cases, 1,288 European ancestry controls	219 European ancestry cases, 262 European ancestry controls	6p21.33	MUC21, TRIM39, RPP21	rs3094084-T	0.154	2E-11		2.3	[1.76-3.01]	Affymetrix [906600]	N
602	chr6_mcf_hap5	2331995	2331996	rs2844678	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	683 Turkish ancestry cases, 1,721 Turkish ancestry controls	NA	6p21.33	MUC21	rs2844678-?	NR	2E-42				Illumina [4495750] (imputed)	N
602	chr6_mcf_hap5	2331995	2331996	rs2844678	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	286 European ancestry cases, 2,652 European ancestry controls, 76 Han Chinese ancestry cases, 889 Han Chinese ancestry controls, 46 South Asian ancestry cases, 501 South Asian ancestry controls, 683 Turkish ancestry cases, 1,721 Turkish ancestry controls	NA	6p21.33	MUC21	rs2844678-?	NR	6E-47		2.71	NR	Illumina [up to 4495750] (imputed)	N
602	chr6_mcf_hap5	2337077	2337078	rs9262397	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Unilateral cleft lip and palate	205 Asian ancestry cases, 315 European ancestry cases, 692 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	6p21.33	NR	rs9262397-?	NR	1E-6		1.75	[1.6-1.91]	Illumina [539000] (imputed)	N
602	chr6_mcf_hap5	2340951	2340952	rs13211972	32276964	Shete S	2020-04-10	Cancer Res	A genome-wide association study identifies two novel susceptible regions for squamous cell carcinoma of the head and neck.	Oropharynx cancer	1,144 European ancestry cases, 4,493 European ancestry controls	2,328 European ancestry cases, 3,232 European ancestry controls	6p21.33	MUC21	rs13211972-A	0.05	1E-10		1.55	[1.36-1.77]	Illumina [7858089] (imputed)	N
602	chr6_mcf_hap5	2342882	2342883	rs150184132	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs150184132-C	0.961	1E-9				Affymetrix [10369434] (imputed)	N
602	chr6_mcf_hap5	2350951	2350952	rs1632862	26379185	Garcia-Etxebarria K	2015-09-17	PLoS One	No Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity.	Severe influenza A (H1N1) infection	49 European ancestry severe cases, 549 European ancestry population controls	NA	6p21.33	MUC21, MUC22	rs1632862-?	0.009311	2E-14		15.2	[6.123-37.73]	Affymetrix [547296]	N
602	chr6_mcf_hap5	2351133	2351134	rs9262437	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	683 Turkish ancestry cases, 1,721 Turkish ancestry controls	NA	6p21.33	MUC22	rs9262437-?	NR	5E-31	(conditional on rs2844678)			Illumina [4495750] (imputed)	N
602	chr6_mcf_hap5	2351884	2351885	rs6920820	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p21.33		rs6920820-?	NR	2E-9		0.0557301	[0.037-0.074] unit increase	Affymetrix [20259828] (imputed)	N
602	chr6_mcf_hap5	2354811	2354812	rs1634718	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	MUC22, MUC21	rs1634718-G	0.2540161	7E-11	(EA, Complement C4)	0.3291	[0.23-0.43] unit decrease	Affymetrix [509946]	N
602	chr6_mcf_hap5	2355111	2355112	rs1634719	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs1634719-A	0.697	1E-33				Affymetrix [10369434] (imputed)	N
602	chr6_mcf_hap5	2358165	2358166	rs28360974	23551011	Zhao L	2013-04-02	Ann Hum Genet	Genome-wide association study of pre-eclampsia detects novel maternal single nucleotide polymorphisms and copy-number variants in subsets of the Hyperglycemia and Adverse Pregnancy Outcome (HAPO) study cohort.	Preeclampsia	21 Afro-Caribbean cases, 1,010 Afro-Caribbean controls, 50 European ancestry cases, 1,202 European ancestry controls, 62 Hispanic cases, 658 Hispanic controls	NA	6p21.33	MUC21	rs28360974-?	NR	3E-6	(Afro-Caribbean)	10.13	[3.85-26.67]	Illumina [2485249] (imputed)	N
602	chr6_mcf_hap5	2358295	2358296	rs149405105	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MUC22	rs149405105-A	NR	2E-8		0.0337227	[0.022-0.045] unit increase	Affymetrix [319769] (imputed)	N
602	chr6_mcf_hap5	2358295	2358296	rs149405105	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	MUC22	rs149405105-A	NR	1E-8		0.0343316	[0.023-0.046] unit increase	Affymetrix [319769] (imputed)	N
602	chr6_mcf_hap5	2358295	2358296	rs149405105	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.33	MUC22	rs149405105-A	NR	3E-10		0.0380088	[0.026-0.05] unit increase	Affymetrix [321114] (imputed)	N
602	chr6_mcf_hap5	2358295	2358296	rs149405105	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	MUC22	rs149405105-A	NR	2E-9		0.0364062	[0.025-0.048] unit increase	Affymetrix [321169] (imputed)	N
603	chr6_mcf_hap5	2364037	2364039	rs71757905	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Chickenpox	107,769 European ancestry cases, 15,982 European ancestry controls	NA	6p21.33	NR	rs71757905-?	NR	9E-6		0.1098	[0.062-0.158] unit increase	Illumina [at least 560000] (imputed)	N
603	chr6_mcf_hap5	2364490	2364491	rs9394026	29031612	Hirata J	2017-10-12	J Invest Dermatol	Variants at HLA-A, HLA-C, and HLA-DQB1 Confer Risk of Psoriasis Vulgaris in Japanese.	Psoriasis vulgaris	282 Japanese ancestry cases, 426 Japanese ancestry controls	320 Japanese ancestry cases, 1,622 Japanese ancestry controls	6p21.33	HLA	rs9394026-G	0.197	7E-15		1.86	[1.59-2.18]	Illumina [6369185] (imputed)	N
603	chr6_mcf_hap5	2366416	2366417	rs3869097	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.33		rs3869097-T	0.32183300000000004	2E-7		1.0237832	[1.01-1.03]	Affymetrix, Illumina [9851866] (imputed)	N
603	chr6_mcf_hap5	2367774	2367775	rs1634726	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental longevity (mother's age at death)	52,776 middle-aged British individuals	NA	6p21.33	NR	rs1634726-?	NR	6E-6		0.032105	[0.018-0.046] unit increase	Affymetrix [9658292] (imputed)	N
603	chr6_mcf_hap5	2369933	2369934	rs1632870	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MUC22	rs1632870-T	NR	5E-8		0.0227309	[0.015-0.031] unit increase	Affymetrix [323123] (imputed)	N
603	chr6_mcf_hap5	2370967	2370968	rs139141104	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 142,336 Japanese ancestry controls	NA	6p21.33	MUC22	rs139141104-?	NR	1E-18		0.16637	[0.13-0.2] unit increase	Illumina [19707525] (imputed)	N
603	chr6_mcf_hap5	2371638	2371639	rs114115115	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.33		rs114115115-T	0.937	4E-16				Affymetrix [10369434] (imputed)	N
603	chr6_mcf_hap5	2371638	2371639	rs114115115	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cervical cancer	6,563 European ancestry cases, 410,350 European ancestry controls	NA	6p21.33		rs114115115-T	NR	6E-13		1.3463	NR	Affymetrix [7846216] (imputed)	N
603	chr6_mcf_hap5	2371965	2371966	rs9380210	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.33		rs9380210-A	0.72	1E-24				Affymetrix [10369434] (imputed)	N
603	chr6_mcf_hap5	2371965	2371966	rs9380210	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.33		rs9380210-A	0.72	7E-16				Affymetrix [10369434] (imputed)	N
603	chr6_mcf_hap5	2371965	2371966	rs9380210	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p21.33		rs9380210-A	0.72	5E-18				Affymetrix [10369434] (imputed)	N
603	chr6_mcf_hap5	2372001	2372002	rs1634729	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	118,886 East Asian ancestry individuals	NA	6p21.33		rs1634729-C	0.950931	3E-9		0.0534033	[0.036-0.071] unit decrease	Illumina [13474352] (imputed)	N
603	chr6_mcf_hap5	2372001	2372002	rs1634729	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MUC22	rs1634729-T	NR	3E-9		0.0248876	[0.017-0.033] unit decrease	Affymetrix [319769] (imputed)	N
603	chr6_mcf_hap5	2372001	2372002	rs1634729	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	MUC22	rs1634729-T	NR	6E-9		0.0242344	[0.016-0.032] unit decrease	Affymetrix [319769] (imputed)	N
603	chr6_mcf_hap5	2372027	2372028	rs116071718	31066027	Nicoletti P	2019-05-07	Clin Pharmacol Ther	Shared genetic risk factors across carbamazepine-induced hypersensitivity reactions.	Carbamazepine-induced serious cutaneous adverse reaction	43 European ancestry cases, 10,701 European ancestry controls	NA	6p21.33	MUC22	rs116071718-?	NR	2E-6	(conditioned on rs192543598)	3.99	[2.25-7.05]	Illumina [5271349] (imputed)	N
603	chr6_mcf_hap5	2372722	2372723	rs9394030	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	MUC22	rs9394030-A	NR	7E-9		0.0193287	[0.013-0.026] unit increase	Affymetrix [321169] (imputed)	N
603	chr6_mcf_hap5	2374670	2374671	rs1632865	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.33		rs1632865-T	0.584	6E-30				Affymetrix [10369434] (imputed)	N
603	chr6_mcf_hap5	2375445	2375446	rs2517554	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.33		rs2517554-C	0.386	7E-33				Affymetrix [10369434] (imputed)	N
603	chr6_mcf_hap5	2375759	2375760	rs62399429	33531474	Burton CL	2021-02-02	Transl Psychiatry	Genome-wide association study of pediatric obsessive-compulsive traits: shared genetic risk between traits and disorder.	Obsessive-compulsive traits	5,018 European ancestry children and adolescents	NA	6p21.33	MUC22	rs62399429-?	NR	5E-6		0.131	[0.074-0.188] unit increase	Illumina [7870334] (imputed)	N
603	chr6_mcf_hap5	2376835	2376836	rs566731348	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.33	NR	rs566731348-A	0.951	4E-12		1.889	[1.71-2.07]	Illumina [11270530] (imputed)	N
603	chr6_mcf_hap5	2379638	2379639	rs9262549	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MUC22	rs9262549-G	NR	2E-14		0.0228763	[0.017-0.029] unit increase	Affymetrix [321016] (imputed)	N
603	chr6_mcf_hap5	2379638	2379639	rs9262549	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MUC22	rs9262549-G	NR	4E-18		0.0282059	[0.022-0.035] unit increase	Affymetrix [323123] (imputed)	N
603	chr6_mcf_hap5	2380260	2380261	rs12110481	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MUC22	rs12110481-T	NR	2E-14		0.0246712	[0.018-0.031] unit decrease	Affymetrix [323123] (imputed)	N
603	chr6_mcf_hap5	2383367	2383368	rs3909113	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Sutterella)	1,068 Japanese ancestry individuals	NA	6p21.33	MUC22	rs3909113-G	0.29	3E-6		0.03	[0.017-0.043] unit decrease	Illumina [6380737] (imputed)	N
603	chr6_mcf_hap5	2383442	2383443	rs10947124	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	MUC22	rs10947124-T	NR	2E-9		0.0181143	[0.012-0.024] unit increase	Affymetrix [321169] (imputed)	N
603	chr6_mcf_hap5	2383625	2383626	rs59356242	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LRPAP1	5,365 Icelandic ancestry individuals	NA	6p21.33		rs59356242-A	0.0137	2E-11		0.546071	[0.39-0.7] unit increase	Illumina [7506463] (imputed)	N
603	chr6_mcf_hap5	2383959	2383960	rs6933349	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6p21.33		rs6933349-?	NR	1E-8		0.926525	[0.9-0.95]	NR [685523]	N
603	chr6_mcf_hap5	2384047	2384048	rs7768644	26151496	Chen PL	2015-07-07	Nat Commun	Genetic determinants of antithyroid drug-induced agranulocytosis by human leukocyte antigen genotyping and genome-wide association study.	Thionamide-induced agranulocytosis in Graves' disease	21 East Asian ancestry cases with agranulocytosis, 662 East Asian ancestry cases without agranulocytosis	21 East Asian ancestry cases with agranulocytosis, 546 East Asian ancestry cases without agranulocytosis	6p21.33	HLA	rs7768644-A	0.091	3E-13	(trend)	5.01	[3.1-8.1] (allelic)	Affymetrix [522980]	N
603	chr6_mcf_hap5	2384289	2384290	rs28732081	30037793	Haapasalo K	2018-09-21	Infect Immun	The Psoriasis Risk Allele <i>HLA-C*06:02</i> Shows Evidence of Association with Chronic or Recurrent Streptococcal Tonsillitis.	Tonsillitis	95 Finnish cases, 504 Finnish controls	NA	6p21.33	HLA-C, HLA-B	rs28732081-?		6E-6		4.7		Illumina [100000]	N
603	chr6_mcf_hap5	2384398	2384399	rs3869098	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs3869098-A	0.528	2E-32				Affymetrix [10369434] (imputed)	N
603	chr6_mcf_hap5	2384398	2384399	rs3869098	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MUC22	rs3869098-G	NR	6E-19		0.0251596	[0.02-0.031] unit increase	Affymetrix [319769] (imputed)	N
603	chr6_mcf_hap5	2384398	2384399	rs3869098	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MUC22	rs3869098-G	NR	4E-11		0.0207579	[0.015-0.027] unit increase	Affymetrix [323858] (imputed)	N
603	chr6_mcf_hap5	2384398	2384399	rs3869098	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	MUC22	rs3869098-G	NR	6E-18		0.0244083	[0.019-0.03] unit increase	Affymetrix [319769] (imputed)	N
603	chr6_mcf_hap5	2384398	2384399	rs3869098	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	MUC22	rs3869098-G	NR	6E-10		0.0194883	[0.013-0.026] unit increase	Affymetrix [127266] (imputed)	N
603	chr6_mcf_hap5	2384398	2384399	rs3869098	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MUC22	rs3869098-G	NR	1E-13		0.0208831	[0.015-0.026] unit decrease	Affymetrix [321016] (imputed)	N
603	chr6_mcf_hap5	2384398	2384399	rs3869098	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MUC22	rs3869098-G	NR	3E-16		0.0252592	[0.019-0.031] unit decrease	Affymetrix [323123] (imputed)	N
603	chr6_mcf_hap5	2384398	2384399	rs3869098	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	MUC22	rs3869098-G	NR	2E-15		0.0228249	[0.017-0.028] unit increase	Affymetrix [321169] (imputed)	N
603	chr6_mcf_hap5	2384473	2384474	rs4248153	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MUC22	rs4248153-G	NR	3E-11		0.0193381	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
603	chr6_mcf_hap5	2384473	2384474	rs4248153	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	MUC22	rs4248153-G	NR	2E-10		0.018489	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
603	chr6_mcf_hap5	2384473	2384474	rs4248153	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MUC22	rs4248153-G	NR	2E-15		0.0230515	[0.017-0.029] unit decrease	Affymetrix [321016] (imputed)	N
603	chr6_mcf_hap5	2384562	2384563	rs4248154	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.33		rs4248154-C	0.831	5E-19				Affymetrix [10369434] (imputed)	N
603	chr6_mcf_hap5	2384562	2384563	rs4248154	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Prostate cancer	10,792 European ancestry cases, 410,350 European ancestry controls	NA	6p21.33		rs4248154-T	NR	4E-8		1.1076651	NR	Affymetrix [7846216] (imputed)	N
603	chr6_mcf_hap5	2384562	2384563	rs4248154	21900946	Nakabayashi K	2011-09-08	J Hum Genet	Identification of independent risk loci for Graves' disease within the MHC in the Japanese population.	Graves' disease	1,119 Japanese ancestry cases, 2,718 Japanese ancestry controls	432 Japanese ancestry cases, 1,157 Japanese ancestry controls	6p21.33	MHC	rs4248154-C	0.54	1E-13		1.38	[1.27-1.50]	Perlegen [268068]	N
603	chr6_mcf_hap5	2385415	2385416	rs34416364	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6p21.33	NR	rs34416364-G	0.90442	8E-9		1.0608954	[1.04-1.08]	Affymetrix [15688218] (imputed)	N
603	chr6_mcf_hap5	2385415	2385416	rs34416364	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	6p21.33	NR	rs34416364-?	NR	4E-6		0.0711	[0.041-0.101] unit decrease	Illumina [at least 560000] (imputed)	N
603	chr6_mcf_hap5	2387378	2387379	rs11753208	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	MUC22	rs11753208-T	0.08492462	2E-13	(EA, MHC class I polypeptide-related sequence A)	0.5826	[0.43-0.74] unit decrease	Affymetrix [509946]	N
603	chr6_mcf_hap5	2387410	2387411	rs9262555	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	6p21.33	NR	rs9262555-?	NR	6E-13		7.194	NR z score decrease	Illumina [at least 830937] (imputed)	N
603	chr6_mcf_hap5	2387436	2387437	rs141397370	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LRPAP1	5,361 Icelandic ancestry individuals	NA	6p21.33		rs141397370-T	0.01079	3E-25		0.911048	[0.74-1.08] unit increase	Illumina [7506463] (imputed)	N
603	chr6_mcf_hap5	2387672	2387673	rs2844670	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MUC22	rs2844670-G	NR	2E-9		0.0247626	[0.017-0.033] unit increase	Affymetrix [323123] (imputed)	N
603	chr6_mcf_hap5	2388801	2388802	rs2844665	21801394	Genin E	2011-07-29	Orphanet J Rare Dis	Genome-wide association study of Stevens-Johnson Syndrome and Toxic Epidermal Necrolysis in Europe.	Drug-induced Stevens-Johnson syndrome or toxic epidermal necrolysis (SJS/TEN)	424 European ancestry cases, 1,881 European ancestry controls	NA	6p21.33	C6orf205	rs2844665-C	0.62	3E-7		1.54	[1.30-1.82]	Illumina [268914]	N
603	chr6_mcf_hap5	2388940	2388941	rs9262558	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Osteoporosis	8,520 European ancestry cases, 479,981 European ancestry controls, 9,794 East Asian ancestry cases, 168,932 East Asian ancestry controls	NA	6p21.33		rs9262558-T	NR	3E-8		0.1429	[0.092-0.194] unit decrease	Affymetrix, Illumina [25844994] (imputed)	N
603	chr6_mcf_hap5	2389070	2389071	rs115730672	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Treatment or medication use - insulin product (UKB data field 20003_1140883066)	4,469 European ancestry cases, 451,807 European ancestry controls	NA	6p21.33		rs115730672-C	0.005712	3E-11		1.05	[0.74-1.36] unit increase	NR [11842647] (imputed)	N
603	chr6_mcf_hap5	2391993	2391994	rs150180633	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p21.33	NR	rs150180633-?	NR	4E-14		0.3518	[0.26-0.44] unit increase	Illumina [at least 560000] (imputed)	N
603	chr6_mcf_hap5	2392131	2392132	rs116353863	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	6p21.33	MHC	rs116353863-C	0.0165	9E-9		1.2	[1.13-1.27]	Affymetrix, Illumina [16900397] (imputed)	N
603	chr6_mcf_hap5	2393853	2393853	rs770655224	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.33	MUC22	rs770655224-G	0.8871	4E-7		0.0673	[0.041-0.093] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
603	chr6_mcf_hap5	2393872	2393873	rs12528596	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	6p21.33	Intergenic	rs12528596-T	NR	1E-7		0.0242361	[0.015-0.033] unit decrease	Illumina [13519193] (imputed)	N
603	chr6_mcf_hap5	2394126	2394127	rs10456389	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MUC22	rs10456389-T	NR	2E-9		0.0238148	[0.016-0.032] unit decrease	Affymetrix [321016] (imputed)	N
603	chr6_mcf_hap5	2395297	2395298	rs17190106	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)(bidirectional)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.33		rs17190106-G	NR	2E-10				Affymetrix [7846216] (imputed)	N
603	chr6_mcf_hap5	2398132	2398133	rs73727186	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	6p21.33	HCG22, MUC22, MUC21, C6orf15, PSORS1C1, CDSN, PSORS1C2, CCHCR1, DPCR1, TCF19, POU5F1, SFTA2, VARS2, PSORS1C3, GTF2H4, DDR1, HCG27, MIR4640	rs73727186-?		6E-6	(heterogeneous)	0.235	[0.13-0.34] unit increase	Illumina [1492601] (imputed)	N
603	chr6_mcf_hap5	2398132	2398133	rs73727186	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	6p21.33	HCG22, MUC22, MUC21, C6orf15, PSORS1C1, CDSN, PSORS1C2, CCHCR1, DPCR1, TCF19, POU5F1, SFTA2, VARS2, PSORS1C3, GTF2H4, DDR1, HCG27, MIR4640	rs73727186-?		5E-6	(dominant)	0.233	[-0.43732-0.90332] unit increase	Illumina [1492601] (imputed)	N
603	chr6_mcf_hap5	2398924	2398925	rs2251830	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	6p21.33	HCG22	rs2251830-A	0.36	5E-22		0.053	[0.041-0.065] unit increase	Affymetrix, Illumina [2704730] (imputed)	N
603	chr6_mcf_hap5	2400354	2400355	rs2517532	22493691	Eriksson N	2012-04-06	PLoS One	Novel associations for hypothyroidism include known autoimmune risk loci.	Hypothyroidism	3,736 European ancestry cases, 35,546 European ancestry controls	NA	6p21.33	HLA-C, LOC729792, HCG22, C6orf15, DHFRP2, HCP5, HLA-B	rs2517532-G	0.597	1E-8		1.16	[1.10-1.22]	Illumina [870065]	N
603	chr6_mcf_hap5	2400493	2400494	rs2523864	25813999	Jeong S	2015-04-01	Invest Ophthalmol Vis Sci	Identification of a Novel Mucin Gene HCG22 Associated With Steroid-Induced Ocular Hypertension.	Change in intraocular pressure in response to steroid treatment (triamcinolone acetonide)	64 European ancestry individuals	49 European ancestry individuals	6p21.33	HCG22, HLA-A, HLA-B, MUC22	rs2523864-T	0.412	5E-9				Illumina [1545328]	N
603	chr6_mcf_hap5	2402219	2402220	rs9262602	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p21.33	NR	rs9262602-G	0.132	2E-8	(IFNAR2_of_CD20p)			Illumina [5084123] (imputed)	N
603	chr6_mcf_hap5	2402476	2402477	rs77203474	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Antisaccade task score	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	6p21.33	HCG22	rs77203474-A	NR	3E-6		0.1378235	[0.079-0.197] unit decrease	Illumina [> 6200000] (imputed)	N
603	chr6_mcf_hap5	2402865	2402866	rs4713428	26584805	Dorajoo R	2015-11-19	Genes Nutr	A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.	Plasma omega-3 polyunsaturated fatty acid level (eicosapentaenoic acid)	717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls	NA	6p21.33	NR	rs4713428-G	0.294	7E-6		0.0854	[0.048-0.123] unit decrease	Illumina [up to 1980188] (imputed)	N
603	chr6_mcf_hap5	2404090	2404091	rs2523855	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCG22	rs2523855-C	NR	2E-10		0.0207136	[0.014-0.027] unit decrease	Affymetrix [323123] (imputed)	N
603	chr6_mcf_hap5	2404751	2404752	rs2905757	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCG22	rs2905757-T	NR	5E-12		0.0207441	[0.015-0.027] unit increase	Affymetrix [319769] (imputed)	N
603	chr6_mcf_hap5	2404751	2404752	rs2905757	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HCG22	rs2905757-T	NR	3E-11		0.0199898	[0.014-0.026] unit increase	Affymetrix [319769] (imputed)	N
603	chr6_mcf_hap5	2404751	2404752	rs2905757	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCG22	rs2905757-T	NR	3E-8		0.0166947	[0.011-0.023] unit decrease	Affymetrix [321016] (imputed)	N
603	chr6_mcf_hap5	2406524	2406525	rs9262631	26151496	Chen PL	2015-07-07	Nat Commun	Genetic determinants of antithyroid drug-induced agranulocytosis by human leukocyte antigen genotyping and genome-wide association study.	Thionamide-induced agranulocytosis in Graves' disease	21 East Asian ancestry cases with agranulocytosis, 662 East Asian ancestry cases without agranulocytosis	21 East Asian ancestry cases with agranulocytosis, 546 East Asian ancestry cases without agranulocytosis	6p21.33	HLA	rs9262631-A	0.063	6E-19	(trend)	7.09	[4.32-11.63] (allelic)	Affymetrix [522980]	N
603	chr6_mcf_hap5	2406731	2406732	rs9262632	21051598	Pereyra F	2010-11-04	Science	The major genetic determinants of HIV-1 control affect HLA class I peptide presentation.	HIV-1 control	516 European cases, 1,196 European controls, 341 African American cases, 892 African American controls, 117 Hispanic cases, 560 Hispanic controls	NA	6p21.33	intergenic	rs9262632-G	0.10	1E-8	(AA)	3.1	[NR]	Illumina [1384048] (imputed)	N
603	chr6_mcf_hap5	2408159	2408160	rs76541615	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	6p21.33	MHC-region	rs76541615-T	0.796	1E-17		1.08	[1.06-1.09]	Affymetrix, Illumina [11800000] (imputed)	N
603	chr6_mcf_hap5	2409259	2409260	rs2517521	32589924	Bi W	2020-06-23	Am J Hum Genet	A Fast and Accurate Method for Genome-Wide Time-to-Event Data Analysis and Its Application to UK Biobank.	Hyperlipidemia (time to event)	35,623 British ancestry cases, 247,248 British ancestry controls	NA	6p21.33	HCG22	rs2517521-?	NR	3E-8				NR [~ 24000000] (imputed)	N
603	chr6_mcf_hap5	2409259	2409260	rs2517521	32589924	Bi W	2020-06-23	Am J Hum Genet	A Fast and Accurate Method for Genome-Wide Time-to-Event Data Analysis and Its Application to UK Biobank.	Essential hypertension (time to event)	76,566 British ancestry cases, 206,305 British ancestry controls	NA	6p21.33	HCG2248	rs2517521-?	NR	4E-8				NR [~ 24000000] (imputed)	N
603	chr6_mcf_hap5	2409492	2409493	rs78725346	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.33	NR	rs78725346-A	0.01045	3E-8	(CKB)	0.03173	NR unit increase	Illumina [1671387] (imputed)	N
603	chr6_mcf_hap5	2411205	2411206	rs2523842	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCG22	rs2523842-A	NR	2E-9		0.0493584	[0.033-0.066] unit decrease	Affymetrix [321016] (imputed)	N
603	chr6_mcf_hap5	2411378	2411379	rs9262651	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HCG22	rs9262651-T	NR	3E-11		0.0220473	[0.016-0.029] unit increase	Affymetrix [321169] (imputed)	N
603	chr6_mcf_hap5	2412045	2412046	rs2517510	21738480	Nalls MA	2011-07-01	PLoS Genet	Multiple loci are associated with white blood cell phenotypes.	White blood cell count	19,509 European ancestry individuals	11,823 European ancestry individuals	6p21.33	PSORS1C1, MUC21, HCG22, C6orf15, CCHCR1, CDSN, PSORS1C2	rs2517510-T		4E-13	(WBC)	0.0129	[0.0094-0.0164] unit decrease	Affymetrix, Illumina [> 2400000] (imputed)	N
603	chr6_mcf_hap5	2415566	2415567	rs149917912	33841421	Li J	2021-03-25	Front Immunol	Variants at the MHC Region Associate With Susceptibility to <i>Clostridioides difficile</i> Infection: A Genome-Wide Association Study Using Comprehensive Electronic Health Records.	Clostridioides difficle infection	1,160 European ancestry cases, 14,144 European ancestry controls	NA	6p21.33	NR	rs149917912-C	0.0242	5E-6		1.67	[1.37-2]	Illumina [64973696] (imputed)	N
603	chr6_mcf_hap5	2416254	2416255	rs75056122	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.33	NR	rs75056122-T	0.01045	3E-8	(CKB)	0.03173	NR unit increase	Illumina [1671387] (imputed)	N
603	chr6_mcf_hap5	2416518	2416519	rs3094089	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCG22	rs3094089-C	NR	1E-9		0.021023	[0.014-0.028] unit decrease	Affymetrix [323858] (imputed)	N
603	chr6_mcf_hap5	2416518	2416519	rs3094089	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HCG22	rs3094089-C	NR	7E-9		0.0200851	[0.013-0.027] unit decrease	Affymetrix [127266] (imputed)	N
603	chr6_mcf_hap5	2417114	2417115	rs3132567	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HCG22	rs3132567-T	NR	3E-8		0.0202317	[0.013-0.027] unit decrease	Affymetrix [319769] (imputed)	N
603	chr6_mcf_hap5	2417475	2417476	rs192064582	32141793	Garman L	2020-03-06	Ocul Immunol Inflamm	Genome-Wide Association Study of Ocular Sarcoidosis Confirms HLA Associations and Implicates Barrier Function and Autoimmunity in African Americans.	Ocular sarcoidosis	260 African American cases, 1,551 African American controls	NA	6p21.33	NR	rs192064582-T	NR	8E-6		1.747	[1.37-2.23]	Illumina [13976150] (imputed)	N
603	chr6_mcf_hap5	2417495	2417496	rs184099286	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	QRS duration	3,274 African American individuals, 13,420 Hispanic/Latino individuals, 126 Asian ancestry individuals, 226 Native American ancestry individuals	NA	6p21.33	HCG22	rs184099286-?	NR	5E-9	(Hispanic/Latino)	1.17582	[0.78-1.57] unit decrease	Illumina [26566045] (imputed)	N
603	chr6_mcf_hap5	2422579	2422579	rs145214406	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.33	NR	rs145214406-CAA	0.012	1E-12		0.593265	[0.43-0.76] unit increase	Affymetrix [up to 8900000] (imputed)	N
603	chr6_mcf_hap5	2425854	2425855	rs2517481	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Growth differentiation factor-15 levels	21,758 European ancestry individuals	9,173 individuals	6p21.33		rs2517481-C	0.41	3E-9		0.0481	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
603	chr6_mcf_hap5	2428417	2428418	rs2517474	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small LDL	115,082 European ancestry individuals	NA	6p21.33		rs2517474-G	0.542926	2E-8		0.023198	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
603	chr6_mcf_hap5	2428417	2428418	rs2517474	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium LDL	115,082 European ancestry individuals	NA	6p21.33		rs2517474-G	0.542926	1E-9		0.0250618	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
603	chr6_mcf_hap5	2428417	2428418	rs2517474	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium LDL	115,082 European ancestry individuals	NA	6p21.33		rs2517474-G	0.542926	7E-9		0.0240182	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
603	chr6_mcf_hap5	2428417	2428418	rs2517474	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small LDL	115,082 European ancestry individuals	NA	6p21.33		rs2517474-G	0.542926	3E-8		0.0228734	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
603	chr6_mcf_hap5	2428417	2428418	rs2517474	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	6p21.33		rs2517474-G	0.542926	2E-9		0.0247017	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
603	chr6_mcf_hap5	2428417	2428418	rs2517474	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	RNU6-1133P	rs2517474-A	NR	8E-10		0.0173534	[0.012-0.023] unit increase	Affymetrix [319769] (imputed)	N
603	chr6_mcf_hap5	2428417	2428418	rs2517474	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	RNU6-1133P	rs2517474-A	NR	9E-9		0.0162462	[0.011-0.022] unit increase	Affymetrix [319769] (imputed)	N
603	chr6_mcf_hap5	2428417	2428418	rs2517474	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	RNU6-1133P	rs2517474-A	NR	7E-9		0.0163369	[0.011-0.022] unit decrease	Affymetrix [321016] (imputed)	N
603	chr6_mcf_hap5	2428417	2428418	rs2517474	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	RNU6-1133P	rs2517474-A	NR	3E-9		0.0169233	[0.011-0.023] unit increase	Affymetrix [321169] (imputed)	N
603	chr6_mcf_hap5	2430138	2430139	rs373537558	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	6p21.33	RNU6-1133P	rs373537558-A	0.9873	1E-12		0.0855	[0.062-0.109] unit increase	Affymetrix [18391927] (imputed)	N
603	chr6_mcf_hap5	2432272	2432273	rs9263475	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4 on CD39+ secreting CD4 regulatory T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs9263475-G	0.51353	1E-12		0.2076	[0.15-0.26] unit increase	Illumina [17954496] (imputed)	N
603	chr6_mcf_hap5	2432272	2432273	rs9263475	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.33	Intergenic	rs9263475-G	NR	6E-9	(women)	0.0308596	[0.02-0.041] unit decrease	Illumina [13520550] (imputed)	N
603	chr6_mcf_hap5	2432272	2432273	rs9263475	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.33	Intergenic	rs9263475-G	NR	2E-9		0.0221293	[0.015-0.029] unit decrease	Illumina [13520550] (imputed)	N
603	chr6_mcf_hap5	2434556	2434557	rs28732092	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p21.33	NR	rs28732092-T	0.0787	5E-7		0.011	[0.0067-0.0153] unit increase	NR [7666894] (imputed)	N
603	chr6_mcf_hap5	2435665	2435666	rs2535307	28132517	Xie W	2017-01-28	AIDS Res Hum Retroviruses	Genome-Wide Analyses Reveal Gene Influence on HIV Disease Progression and HIV-1C Acquisition in Southern Africa.	HIV progression (CD4 and viral load)	556 Motswana ancestry cases	NA	6p21.33	HCG22	rs2535307-C	0.48	4E-7				Illumina [NR]	N
603	chr6_mcf_hap5	2436305	2436306	rs2535305	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	RNU6-1133P	rs2535305-G	NR	8E-10		0.0178493	[0.012-0.024] unit increase	Affymetrix [321169] (imputed)	N
603	chr6_mcf_hap5	2436942	2436943	rs12527394	29534301	Nishida N	2018-03-13	Hepatology	Key HLA-DRB1-DQB1 haplotypes and role of the BTNL2 gene for response to a hepatitis B vaccine.	Response to hepatitis B vaccine	107 Japanese ancestry low responder individuals, 351 Japanese ancestry intermediate responder individuals, 735 Japanese ancestry high responder individuals	NA	6p21.33	C6orf15	rs12527394-?		5E-8		0.174	unit decrease	Affymetrix [427664]	N
603	chr6_mcf_hap5	2440099	2440100	rs4947296	31050781	Zhao SX	2019-05-03	JAMA Netw Open	Assessment of Molecular Subtypes in Thyrotoxic Periodic Paralysis and Graves Disease Among Chinese Han Adults: A Population-Based Genome-Wide Association Study.	Thyrotoxic hypokalemic periodic paralysis and Graves disease	171 Han Chinese ancestry cases, 2,160 Han Chinese ancestry controls	362 Han Chinese ancestry cases, 1,089 Han Chinese ancestry controls	6p21.33	C6orf15	rs4947296-?	0.14	3E-22		2.06	[1.77-2.39]	Illumina [2752055] (imputed)	N
603	chr6_mcf_hap5	2440099	2440100	rs4947296	23001997	Hou S	2012-12-06	Arthritis Rheum	Identification of a susceptibility locus in STAT4 for Behcet's disease in Han Chinese in a genome-wide association study.	Behcet's disease	147 Han Chinese ancestry cases, 951 Han Chinese ancestry controls	554 Han Chinese ancestry cases, 1,159 Han Chinese ancestry controls	6p21.33	HCG22	rs4947296-?	NR	1E-11		2.57	[1.96-3.37]	Affymetrix [661736]	N
603	chr6_mcf_hap5	2440099	2440100	rs4947296	21841780	Chu X	2011-08-14	Nat Genet	A genome-wide association study identifies two new risk loci for Graves' disease.	Graves' disease	1,468 Chinese ancestry cases, 1,490 Chinese ancestry controls	3,994 Chinese ancestry cases, 3,510 Chinese ancestry controls	6p21.33	MUC21, C6orf15	rs4947296-C	0.14	4E-51		1.77	[1.65-1.91]	Illumina [486049]	N
603	chr6_mcf_hap5	2440261	2440262	rs3130544	23263863	Li J	2012-12-20	Hum Mol Genet	GWAS of blood cell traits identifies novel associated loci and epistatic interactions in Caucasian and African-American children.	Hematology traits	7,943 African American children, 6,234 European ancestry children	NA	6p21.33	PSORS1C1, MUC21, HCG22, C6orf15, CCHCR1, CDSN, PSORS1C2	rs3130544-A	NR	5E-7	(WBC)	0.0189	[0.011-0.026] unit decrease	Illumina [544917]	N
603	chr6_mcf_hap5	2440261	2440262	rs3130544	23055271	Gregersen PK	2012-07-16	Ann Neurol	Risk for myasthenia gravis maps to a (151) Pro->Ala change in TNIP1 and to human leukocyte antigen-B*08.	Myasthenia gravis	400 European ancestry cases, 5,505 European ancestry controls	249 European ancestry cases, 3,415 European ancestry controls	6p21.33	NR	rs3130544-A	0.13	2E-90		5.64	[4.77-6.67]	Illumina [274256]	N
603	chr6_mcf_hap5	2440261	2440262	rs3130544	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.33	intergenic	rs3130544-A	0.1238	9E-58		3.34	[NR]	Illumina [242824]	N
603	chr6_mcf_hap5	2441383	2441384	rs2535298	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p21.33	NR	rs2535298-?	NR	1E-6		0.0761	[0.046-0.107] unit increase	Illumina [at least 560000] (imputed)	N
603	chr6_mcf_hap5	2442140	2442141	rs2535296	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p21.33	NR	rs2535296-?	NR	3E-12		0.0858	[0.062-0.11] unit decrease	Illumina [at least 560000] (imputed)	N
603	chr6_mcf_hap5	2443482	2443483	rs3094087	33227023	Wang Y	2020-11-23	PLoS Genet	Genome-wide association study identifies 16 genomic regions associated with circulating cytokines at birth.	IgA levels	8,318 European ancestry individuals	NA	6p21.33	HLA	rs3094087-T	0.15	2E-10		0.1	[0.080-0.120] unit increase	Illumina [~ 9000000] (imputed)	N
603	chr6_mcf_hap5	2445334	2445335	rs3130967	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	RNU6-1133P	rs3130967-T	NR	2E-9		0.0334393	[0.023-0.044] unit increase	Affymetrix [323123] (imputed)	N
603	chr6_mcf_hap5	2446958	2446959	rs146508039	33841421	Li J	2021-03-25	Front Immunol	Variants at the MHC Region Associate With Susceptibility to <i>Clostridioides difficile</i> Infection: A Genome-Wide Association Study Using Comprehensive Electronic Health Records.	Clostridioides difficle infection in antibiotics-users	587 European ancestry cases, 3,166 European ancestry controls	NA	6p21.33	NR	rs146508039-T	0.025	5E-7		2.24	[1.7-2.88]	Illumina [64973696] (imputed)	N
603	chr6_mcf_hap5	2446992	2446993	rs3130968	34601942	van Zuydam NR	2021-10-04	Circ Genom Precis Med	Genome-Wide Association Study of Peripheral Artery Disease.	Peripheral artery disease	12,086 European ancestry cases, 449,548 European ancestry controls	31,307 cases, 211,753 controls, 3,164 East Asian ancestry cases, 20,134 East Asian ancestry controls	6p21.33		rs3130968-T	0.19	3E-12		1.07	[1.05-1.09]	Affymetrix, Illumina [NR] (imputed)	N
603	chr6_mcf_hap5	2446992	2446993	rs3130968	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	C6orf15	rs3130968-T	NR	4E-9		0.0219861	[0.015-0.029] unit decrease	Affymetrix [319769] (imputed)	N
603	chr6_mcf_hap5	2446992	2446993	rs3130968	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	C6orf15	rs3130968-T	NR	4E-8		0.0204516	[0.013-0.028] unit decrease	Affymetrix [319769] (imputed)	N
603	chr6_mcf_hap5	2446992	2446993	rs3130968	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	C6orf15	rs3130968-T	NR	7E-9		0.0218317	[0.014-0.029] unit decrease	Affymetrix [321169] (imputed)	N
603	chr6_mcf_hap5	2446992	2446993	rs3130968	31285632	Klarin D	2019-07-08	Nat Med	Genome-wide association study of peripheral artery disease in the Million Veteran Program.	Peripheral artery disease	24,009 European ancestry cases, 150,983 European ancestry controls, 5,373 African ancestry cases, 42,485 African ancestry controls, 1,925 Hispanic cases, 18,285 Hispanic controls	5,117 European ancestry cases, 389,291 European ancestry controls	6p21.33	HLA-B	rs3130968-T	0.1371	3E-10		1.07	[1.05-1.10]	Affymetrix [at least 20323458] (imputed)	N
603	chr6_mcf_hap5	2447038	2447039	rs149396823	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	6p21.33		rs149396823-A	0.00992199999999999	1E-11		0.07646505	[0.054-0.099] unit increase	Affymetrix [93095623] (imputed)	N
603	chr6_mcf_hap5	2448554	2448555	rs144846110	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p21.33	C6orf15	rs144846110-G	NR	1E-10		0.0272233	[0.019-0.036] unit decrease	Affymetrix [323858] (imputed)	N
603	chr6_mcf_hap5	2449185	2449186	rs9263523	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Prostate cancer	11,599 European ancestry cases, 199,628 European ancestry controls, 5,672 East Asian ancestry cases, 84,660 East Asian ancestry controls	NA	6p21.33		rs9263523-T	NR	1E-10		0.0949	[0.066-0.124] unit decrease	Affymetrix, Illumina [25775424] (imputed)	N
603	chr6_mcf_hap5	2449471	2449472	rs4371876	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4 on HLA DR+ CD4+ T cell	3,060 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs4371876-A	0.51058	2E-10		0.1831	[0.13-0.24] unit increase	Illumina [18012714] (imputed)	N
603	chr6_mcf_hap5	2449914	2449914	rs200788140	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4 on activated CD4 regulatory T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs200788140-AT	0.35258	7E-11		0.2109	[0.15-0.27] unit increase	Illumina [17954496] (imputed)	N
603	chr6_mcf_hap5	2449914	2449914	rs200788140	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4 on CD39+ activated CD4 regulatory T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs200788140-AT	0.35258	8E-15		0.2502	[0.19-0.31] unit increase	Illumina [17954496] (imputed)	N
603	chr6_mcf_hap5	2451448	2451449	rs9263567	21844884	Wheeler HE	2011-08-16	Pharmacogenomics J	Genome-wide meta-analysis identifies variants associated with platinating agent susceptibility across populations.	Response to platinum-based chemotherapy (cisplatin)	176 Sub-Saharan African ancestry lymphoblastoid cell lines, 83 African ancestry lymphoblastoid cell lines, 175 East Asian ancestry lymphoblastoid cell lines, 174 European ancestry lymphoblastoid cell lines	NA	6p21.33	intergenic	rs9263567-?		5E-6				NR [~ 3000000] (imputed)	N
603	chr6_mcf_hap5	2451448	2451449	rs9263567	21844884	Wheeler HE	2011-08-16	Pharmacogenomics J	Genome-wide meta-analysis identifies variants associated with platinating agent susceptibility across populations.	Response to platinum-based chemotherapy (carboplatin)	176 Sub-Saharan African ancestry lymphoblastoid cell lines, 83 African ancestry lymphoblastoid cell lines, 175 East Asian ancestry lymphoblastoid cell lines, 174 European ancestry lymphoblastoid cell lines	NA	6p21.33	intergenic	rs9263567-?		2E-6				NR [~ 3000000] (imputed)	N
603	chr6_mcf_hap5	2455014	2455015	rs9263622	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.33		rs9263622-T	0.603	5E-29				Affymetrix [10369434] (imputed)	N
603	chr6_mcf_hap5	2455954	2455955	rs6457327	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Prostate cancer	7,438 White British ancestry cases, 118,206 White British ancestry controls	NA	6p21.33		rs6457327-?	NR	5E-8		1.1003	[1.07-1.13]	NR [680312]	N
603	chr6_mcf_hap5	2455954	2455955	rs6457327	20639881	Conde L	2010-07-18	Nat Genet	Genome-wide association study of follicular lymphoma identifies a risk locus at 6p21.32.	Follicular lymphoma	681 European ancestry cases, 750 European ancestry controls	up to 3,164 European ancestry cases, 6,208 European ancestry controls	6p21.33	C6orf15	rs6457327-C	0.56	7E-6	(FL)	1.47	[1.27-1.72]	Illumina [312768]	N
603	chr6_mcf_hap5	2455954	2455955	rs6457327	19620980	Skibola CF	2009-07-20	Nat Genet	Genetic variants at 6p21.33 are associated with susceptibility to follicular lymphoma.	Follicular lymphoma	189 European ancestry cases, 592 European controls	456 European ancestry cases, 2,785 European ancestry controls	6p21.33	STG, PSORS1	rs6457327-C	0.62	5E-11		1.69	[1.43-2.00]	Illumina [~ 500000]	N
603	chr6_mcf_hap5	2457526	2457529	rs141232332	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	C6orf15	rs141232332-G	0.439	2E-17	(Leukocyte immunoglobulin-like receptor subfamily B member 1, LILRB1.5090.49.2)	0.21	[0.17-0.25] unit increase	Affymetrix [10572788] (imputed)	N
603	chr6_mcf_hap5	2459163	2459164	rs2517473	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	6p21.33	C6orf15	rs2517473-C	0.92125	2E-8		0.0215969	[0.014-0.029] unit decrease	Affymetrix [NR] (imputed)	N
603	chr6_mcf_hap5	2460539	2460540	rs1265057	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p21.33	C6orf15	rs1265057-C	0.491	2E-6		0.053	[0.031-0.075] unit decrease	Affymetrix, Illumina [7374092] (imputed)	N
603	chr6_mcf_hap5	2460733	2460734	rs3132556	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	6p21.33	NR	rs3132556-A	0.150099	4E-8		0.048321012	[0.031-0.066] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
603	chr6_mcf_hap5	2460733	2460734	rs3132556	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	6p21.33	NR	rs3132556-T	0.184341545793891	8E-15		0.012361368	[0.0092-0.0155] unit decrease	NR [NR]	N
603	chr6_mcf_hap5	2460733	2460734	rs3132556	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	6p21.33	NR	rs3132556-T	0.184341545793891	2E-14		0.015899843	[0.012-0.02] unit decrease	NR [NR]	N
603	chr6_mcf_hap5	2460733	2460734	rs3132556	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	6p21.33	NR	rs3132556-T	0.184341545793891	9E-15		0.010477979	[0.0078-0.0131] unit decrease	NR [NR]	N
603	chr6_mcf_hap5	2460733	2460734	rs3132556	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.33	ATP6V1G2, ATP6V1G2-DDX39B, C6orf15, CCHCR1, CDSN, DDR1, DDX39B, DPCR1, FLOT1, GTF2H4, HCG22, HCG26, HCG27, HCP5, HLA-B, HLA-C, IER3, LINC00243, LTA, MCCD1, MICA, MICB, MIR4640, MIR6891, MUC21, MUC22, NFKBIL1, POU5F1, PSORS1C1, PSORS1C2, PSORS1C3, SFTA2, SNORD117, SNORD84, TCF19, TNF, TUBB, VARS2	rs3132556-A		1E-9		1.08	[1.05-1.11]	Affymetrix, Illumina [NR]	N
603	chr6_mcf_hap5	2461568	2461569	rs2233980	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	6p21.33	NR	rs2233980-A	0.130672432110858	1E-18		0.01198786	[0.0093-0.0147] unit decrease	NR [NR]	N
603	chr6_mcf_hap5	2461940	2461941	rs2233974	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	C6orf15	rs2233974-G	NR	3E-9		0.020957	[0.014-0.028] unit increase	Affymetrix [321016] (imputed)	N
603	chr6_mcf_hap5	2461940	2461941	rs2233974	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p21.33	C6orf15	rs2233974-C	0.377	8E-27				Illumina [118177]	N
603	chr6_mcf_hap5	2462628	2462629	rs1265051	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	C6orf15	rs1265051-G	NR	2E-8		0.0200002	[0.013-0.027] unit increase	Affymetrix [319769] (imputed)	N
603	chr6_mcf_hap5	2462628	2462629	rs1265051	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	C6orf15	rs1265051-G	NR	4E-8		0.0193546	[0.012-0.026] unit increase	Affymetrix [319769] (imputed)	N
603	chr6_mcf_hap5	2463129	2463130	rs2233956	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	C6orf15	rs2233956-C	NR	9E-13		0.0241887	[0.018-0.031] unit decrease	Affymetrix [319769] (imputed)	N
603	chr6_mcf_hap5	2463129	2463130	rs2233956	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	C6orf15	rs2233956-C	NR	3E-18		0.0327829	[0.025-0.04] unit decrease	Affymetrix [323858] (imputed)	N
603	chr6_mcf_hap5	2463129	2463130	rs2233956	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	C6orf15	rs2233956-C	NR	8E-12		0.0231628	[0.017-0.03] unit decrease	Affymetrix [319769] (imputed)	N
603	chr6_mcf_hap5	2463129	2463130	rs2233956	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	C6orf15	rs2233956-C	NR	2E-17		0.0319326	[0.025-0.039] unit decrease	Affymetrix [127266] (imputed)	N
603	chr6_mcf_hap5	2463129	2463130	rs2233956	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	C6orf15	rs2233956-C	NR	9E-10		0.0207055	[0.014-0.027] unit increase	Affymetrix [321016] (imputed)	N
603	chr6_mcf_hap5	2463129	2463130	rs2233956	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	C6orf15	rs2233956-C	NR	6E-9		0.0214605	[0.014-0.029] unit increase	Affymetrix [323123] (imputed)	N
603	chr6_mcf_hap5	2463129	2463130	rs2233956	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	C6orf15	rs2233956-C	NR	3E-9		0.0203515	[0.014-0.027] unit decrease	Affymetrix [321169] (imputed)	N
603	chr6_mcf_hap5	2463129	2463130	rs2233956	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in ever smokers	23,223 European ancestry cases,  16,964 European ancestry controls	NA	6p21.33	C6orf15	rs2233956-C	0.167124691	5E-16		1.1730286	[1.128692308-1.219106364]	Illumina [10439017] (imputed)	N
603	chr6_mcf_hap5	2463129	2463130	rs2233956	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.33	intergenic	rs2233956-G	0.1813	6E-48		2.77	[NR]	Illumina [242824]	N
603	chr6_mcf_hap5	2463175	2463176	rs2233955	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	C6orf15	rs2233955-A	NR	1E-9		0.0215169	[0.015-0.028] unit increase	Affymetrix [319769] (imputed)	N
603	chr6_mcf_hap5	2463175	2463176	rs2233955	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	C6orf15	rs2233955-A	NR	4E-9		0.0208588	[0.014-0.028] unit increase	Affymetrix [319769] (imputed)	N
603	chr6_mcf_hap5	2463333	2463334	rs1265048	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	C6orf15	rs1265048-C	NR	1E-8		0.0172428	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
603	chr6_mcf_hap5	2463333	2463334	rs1265048	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	C6orf15	rs1265048-C	NR	2E-9		0.0182055	[0.012-0.024] unit decrease	Affymetrix [321016] (imputed)	N
603	chr6_mcf_hap5	2463333	2463334	rs1265048	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	C6orf15	rs1265048-C	NR	4E-10		0.0206963	[0.014-0.027] unit decrease	Affymetrix [323123] (imputed)	N
603	chr6_mcf_hap5	2463333	2463334	rs1265048	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	C6orf15	rs1265048-C	NR	4E-8		0.0167663	[0.011-0.023] unit increase	Affymetrix [321169] (imputed)	N
603	chr6_mcf_hap5	2463333	2463334	rs1265048	32421744	Gzara C	2020-05-18	PLoS Pathog	Family-based genome-wide association study of leprosy in Vietnam.	Leprosy	1,749 Vietnamese ancestry cases	1,181 Vietnamese ancestry cases, 688 Vietnamese ancestry controls	6p21.33	C6orf15	rs1265048-T	0.51	6E-11		1.4492754	[1.25-1.72]	Illumina [5607170] (imputed)	N
603	chr6_mcf_hap5	2463333	2463334	rs1265048	30013184	Waage J	2018-07-16	Nat Genet	Genome-wide association and HLA fine-mapping studies identify risk loci and genetic pathways underlying allergic rhinitis.	Allergic sensitization	8,040 European ancestry cases, 16,441 European ancestry controls	NA	6p21.33	C5orf15, PSORS1C1	rs1265048-T	0.64	1E-7		1.1235955	[1.08-1.18]	Affymetrix, Illumina [16531985] (imputed)	N
603	chr6_mcf_hap5	2463358	2463359	rs3094222	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Waist-hip ratio and HDL-C (pairwise)	402,477 European ancestry individuals, 11,333 East Asian, South Asian, Hispanic and African American ancestry individuals	NA	6p21.33	C6orf15-PSORS1C1	rs3094222-A	0.9135	1E-11				Affymetrix, Illumina [2331072] (imputed)	N
603	chr6_mcf_hap5	2463358	2463359	rs3094222	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	6p21.33	C6orf15, PSORS1C1	rs3094222-G	0.108346341	9E-17		1.1642892	[1.123294727-1.206779842]	Illumina [10439017] (imputed)	N
603	chr6_mcf_hap5	2463388	2463389	rs1265047	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	Intergenic	rs1265047-G	0.3485915	2E-17	(EA, MHC class I polypeptide-related sequence A)	0.3847	[0.3-0.47] unit increase	Affymetrix [509946]	N
603	chr6_mcf_hap5	2463864	2463865	rs3130976	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	PSORS1C1	rs3130976-C	NR	1E-8		0.0197052	[0.013-0.026] unit decrease	Affymetrix [323858] (imputed)	N
603	chr6_mcf_hap5	2463864	2463865	rs3130976	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	PSORS1C1	rs3130976-C	NR	3E-8		0.0190506	[0.012-0.026] unit decrease	Affymetrix [127266] (imputed)	N
603	chr6_mcf_hap5	2463864	2463865	rs3130976	32814899	Meyer HV	2020-08-19	Nature	Genetic and functional insights into the fractal structure of the heart.	Myocardial fractal dimension (slice 8)	18,096 European individuals		6p21.33	NR	rs3130976-C	0.28549	3E-8		0.064606	[0.042-0.087] unit increase	Affymetrix [14134301] (imputed)	N
603	chr6_mcf_hap5	2463864	2463865	rs3130976	32814899	Meyer HV	2020-08-19	Nature	Genetic and functional insights into the fractal structure of the heart.	Myocardial fractal dimension (slice 7)	18,096 European individuals		6p21.33	NR	rs3130976-C	0.28549	4E-7		0.059143	[0.036-0.082] unit increase	Affymetrix [14134301] (imputed)	N
603	chr6_mcf_hap5	2463864	2463865	rs3130976	32814899	Meyer HV	2020-08-19	Nature	Genetic and functional insights into the fractal structure of the heart.	Myocardial fractal dimension (slice 6)	18,096 European individuals		6p21.33	NR	rs3130976-C	0.28549	4E-8		0.064023	[0.041-0.087] unit increase	Affymetrix [14134301] (imputed)	N
603	chr6_mcf_hap5	2463864	2463865	rs3130976	32814899	Meyer HV	2020-08-19	Nature	Genetic and functional insights into the fractal structure of the heart.	Myocardial fractal dimension (slice 5)	18,096 European individuals		6p21.33	NR	rs3130976-C	0.28549	1E-8		0.066545	[0.044-0.089] unit increase	Affymetrix [14134301] (imputed)	N
603	chr6_mcf_hap5	2463864	2463865	rs3130976	32814899	Meyer HV	2020-08-19	Nature	Genetic and functional insights into the fractal structure of the heart.	Myocardial fractal dimension (slice 4)	18,096 European individuals		6p21.33	NR	rs3130976-C	0.28549	2E-6		0.055881	[0.033-0.079] unit increase	Affymetrix [14134301] (imputed)	N
603	chr6_mcf_hap5	2463864	2463865	rs3130976	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	6p21.33	C6orf15, PSORS1C1	rs3130976-T	NR	5E-8		0.124739	[0.08-0.169] unit increase	Illumina [at least 950000] (imputed)	N
603	chr6_mcf_hap5	2464121	2464122	rs3130979	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	6p21.33		rs3130979-G	0.655198	1E-8		0.0238702	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
603	chr6_mcf_hap5	2464328	2464329	rs3130980	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PSORS1C1	rs3130980-T	NR	1E-8		0.0171125	[0.011-0.023] unit decrease	Affymetrix [321016] (imputed)	N
603	chr6_mcf_hap5	2464328	2464329	rs3130980	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	PSORS1C1	rs3130980-T	NR	2E-9		0.01962	[0.013-0.026] unit decrease	Affymetrix [323123] (imputed)	N
603	chr6_mcf_hap5	2465210	2465211	rs3094219	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PSORS1C1, CDSN	rs3094219-A	NR	1E-8		0.0159832	[0.01-0.022] unit decrease	Affymetrix [321016] (imputed)	N
603	chr6_mcf_hap5	2466864	2466867	rs34182778	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p21.33	CDSN	rs34182778-G		5E-44		0.035	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
603	chr6_mcf_hap5	2467303	2467304	rs3094214	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	PSORS1C1, CDSN	rs3094214-A	NR	8E-11		0.0199471	[0.014-0.026] unit decrease	Affymetrix [323123] (imputed)	N
603	chr6_mcf_hap5	2467691	2467692	rs3094212	20139978	Kamatani Y	2010-02-07	Nat Genet	Genome-wide association study of hematological and biochemical traits in a Japanese population.	White blood cell count	14,677 Japanese ancestry individuals	NA	6p21.33	PSORS1C1, CDSN	rs3094212-C	0.35	7E-9		0.07	[0.046-0.094] unit increase	Illumina [561583]	N
603	chr6_mcf_hap5	2467745	2467746	rs3819686	29534301	Nishida N	2018-03-13	Hepatology	Key HLA-DRB1-DQB1 haplotypes and role of the BTNL2 gene for response to a hepatitis B vaccine.	Response to hepatitis B vaccine	107 Japanese ancestry low responder individuals, 351 Japanese ancestry intermediate responder individuals, 735 Japanese ancestry high responder individuals	NA	6p21.33	PSORS1C1	rs3819686-?		7E-6		0.15	unit decrease	Affymetrix [427664]	N
603	chr6_mcf_hap5	2468345	2468346	rs78479381	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.33		rs78479381-T	0.109186	3E-20		1.0718842	[1.05-1.09]	Affymetrix, Illumina [9851866] (imputed)	N
603	chr6_mcf_hap5	2469275	2469276	rs3130991	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	C6orf15, PSORS1C1, CDSN	rs3130991-T	0.3442211	4E-15	(EA, MHC class I polypeptide-related sequence B)	0.3612	[0.27-0.45] unit increase	Affymetrix [509946]	N
603	chr6_mcf_hap5	2470065	2470066	rs3095318	27611488	Almoguera B	2016-09-09	Am J Respir Crit Care Med	Identification of Four Novel Loci in Asthma in European American and African American Populations.	Adult asthma	337 African American allergic asthma cases, 321 African American non-allergic asthma cases, 1,367 African American controls, 466 European American allergic asthma cases, 626 European American non-allergic asthma cases, 7,878 European American controls	NA	6p21.33	PSORS1C1	rs3095318-?	NR	7E-8	(EA)			Affymetrix, Illumina [NR] (imputed)	N
603	chr6_mcf_hap5	2470065	2470066	rs3095318	27611488	Almoguera B	2016-09-09	Am J Respir Crit Care Med	Identification of Four Novel Loci in Asthma in European American and African American Populations.	Adult asthma	337 African American allergic asthma cases, 321 African American non-allergic asthma cases, 1,367 African American controls, 466 European American allergic asthma cases, 626 European American non-allergic asthma cases, 7,878 European American controls	NA	6p21.33	PSORS1C1	rs3095318-?	NR	2E-11		0.351	[0.25-0.45] unit increase	Affymetrix, Illumina [NR] (imputed)	N
603	chr6_mcf_hap5	2470152	2470153	rs2302398	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	152,447 East Asian ancestry individuals	NA	6p21.33		rs2302398-G	0.773065	4E-13		0.026479	[0.019-0.034] unit decrease	Illumina [13478948] (imputed)	N
603	chr6_mcf_hap5	2470152	2470153	rs2302398	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	153,015 East Asian ancestry individuals	NA	6p21.33		rs2302398-G	0.773485	9E-11		0.0240481	[0.017-0.031] unit decrease	Illumina [13478961] (imputed)	N
603	chr6_mcf_hap5	2470903	2470904	rs6927322	26503584	Litchfield K	2015-10-27	Nat Commun	Identification of four new susceptibility loci for testicular germ cell tumour.	Testicular germ cell tumor	986 European ancestry cases, 4,946 European ancestry controls	4,009 cases, 4,066 controls	6p21.33	NR	rs6927322-T	0.04	6E-6		1.24	[1.08-1.43]	Illumina [~ 8900000] (imputed)	N
603	chr6_mcf_hap5	2471630	2471631	rs4410768	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p21.33	CDSN, PSORS1C1	rs4410768-G	0.03	2E-10	(Turkish)	3.52	[2.34-5.30]	Illumina [up to 547389]	N
603	chr6_mcf_hap5	2473888	2473889	rs9263688	26151496	Chen PL	2015-07-07	Nat Commun	Genetic determinants of antithyroid drug-induced agranulocytosis by human leukocyte antigen genotyping and genome-wide association study.	Thionamide-induced agranulocytosis in Graves' disease	21 East Asian ancestry cases with agranulocytosis, 662 East Asian ancestry cases without agranulocytosis	21 East Asian ancestry cases with agranulocytosis, 546 East Asian ancestry cases without agranulocytosis	6p21.33	HLA	rs9263688-G	0.053	5E-21	(trend)	8.06	[4.86-13.37] (allelic)	Affymetrix [522980]	N
603	chr6_mcf_hap5	2473913	2473914	rs3094204	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PSORS1C1	rs3094204-A	NR	2E-9		0.0169554	[0.011-0.022] unit decrease	Affymetrix [319769] (imputed)	N
603	chr6_mcf_hap5	2473913	2473914	rs3094204	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	PSORS1C1	rs3094204-A	NR	6E-9		0.0163675	[0.011-0.022] unit decrease	Affymetrix [319769] (imputed)	N
603	chr6_mcf_hap5	2473913	2473914	rs3094204	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	PSORS1C1	rs3094204-A	NR	3E-8		0.0157756	[0.01-0.021] unit decrease	Affymetrix [321169] (imputed)	N
603	chr6_mcf_hap5	2473970	2473971	rs3095307	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	PSORS1C1	rs3095307-C	NR	3E-9		0.0181221	[0.012-0.024] unit decrease	Affymetrix [323123] (imputed)	N
603	chr6_mcf_hap5	2474689	2474690	rs3095304	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PSORS1C1	rs3095304-T	NR	8E-9		0.0205624	[0.014-0.028] unit decrease	Affymetrix [319769] (imputed)	N
603	chr6_mcf_hap5	2475015	2475016	rs9263692	32492067	Ruffieux H	2020-06-03	PLoS Comput Biol	A fully joint Bayesian quantitative trait locus mapping of human protein abundance in plasma.	Protein quantitative trait loci	394 European ancestry individuals	548 European ancestry individuals	6p21.33	NR	rs9263692-?	NR	5E-7	(MICA)			Illumina [~ 4000000] (imputed)	N
603	chr6_mcf_hap5	2475509	2475510	rs3815087	21801394	Genin E	2011-07-29	Orphanet J Rare Dis	Genome-wide association study of Stevens-Johnson Syndrome and Toxic Epidermal Necrolysis in Europe.	Drug-induced Stevens-Johnson syndrome or toxic epidermal necrolysis (SJS/TEN)	424 European ancestry cases, 1,881 European ancestry controls	NA	6p21.33	PSORS1C1	rs3815087-A	0.21	3E-7		1.53	[1.29-1.80]	Illumina [268914]	N
603	chr6_mcf_hap5	2475509	2475510	rs3815087	20041166	Fellay J	2009-12-24	PLoS Genet	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	6p21.33	CDSN	rs3815087-?	NR	8E-8	(progression)			Illumina [NR]	N
603	chr6_mcf_hap5	2475869	2475870	rs3094196	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	PSORS1C1	rs3094196-G	NR	9E-10		0.0228214	[0.016-0.03] unit decrease	Affymetrix [323123] (imputed)	N
603	chr6_mcf_hap5	2476121	2476122	rs13209303	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6p21.33	PSORS1C2	rs13209303-?	NR	7E-6	(TAG 52:6)	0.4081859	[0.23-0.59] unit increase	Affymetrix [at least 2500000] (imputed)	N
603	chr6_mcf_hap5	2476925	2476926	rs6931921	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Strep throat	52,487 European ancestry cases, 22,017 European ancestry controls	NA	6p21.33	NR	rs6931921-?	NR	5E-7		0.045	[0.027-0.063] unit decrease	Illumina [at least 560000] (imputed)	N
603	chr6_mcf_hap5	2477216	2477217	rs3131004	34075027	Gonda X	2021-06-01	Transl Psychiatry	Genetic underpinnings of affective temperaments: a pilot GWAS investigation identifies a new genome-wide significant SNP for anxious temperament in ADGRB3 gene.	Hyperthymic temperament	775 European ancestry individuals	NA	6p21.33		rs3131004-G	NR	9E-7		0.04087	unit decrease	Illumina [2550710] (imputed)	N
603	chr6_mcf_hap5	2477744	2477745	rs9263715	32771030	Tangtanatakul P	2020-08-08	Arthritis Res Ther	Meta-analysis of genome-wide association study identifies FBN2 as a novel locus associated with systemic lupus erythematosus in Thai population.	Systemic lupus erythematosus	487 Thai cases, 1,606 Thai controls	405 Thai cases, 1,590 Thai controls	6p21.33	PSORS1C1	rs9263715-A	0.32	2E-9		1.4329	[NR]	Illumina [421909] (imputed)	N
603	chr6_mcf_hap5	2478968	2478969	rs74375290	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Epithelial ovarian cancer	1,112 White British ancestry cases, 147,944 White British ancestry controls	NA	6p21.33		rs74375290-?	NR	6E-6		2.32386	[1.96-2.69]	NR [666300]	N
603	chr6_mcf_hap5	2479244	2479245	rs3130559	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PSORS1C1	rs3130559-T	NR	2E-8		0.0192616	[0.013-0.026] unit increase	Affymetrix [319769] (imputed)	N
603	chr6_mcf_hap5	2479244	2479245	rs3130559	23144326	Kim DK	2012-11-09	Am J Respir Crit Care Med	Genome-wide association analysis of blood biomarkers in chronic obstructive pulmonary disease.	Chronic obstructive pulmonary disease-related biomarkers	Up to 1,951 European ancestry smokers	NA	6p21.33	PSORS1C1	rs3130559-T	0.2	8E-9	(SP-D)			Illumina [588352]	N
603	chr6_mcf_hap5	2479757	2479758	rs6906565	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	6p21.33	NR	rs6906565-T	0.0994448200117359	2E-12		0.01719559	[0.012-0.022] unit increase	NR [NR]	N
603	chr6_mcf_hap5	2479757	2479758	rs6906565	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	6p21.33	NR	rs6906565-T	0.0994448200117359	2E-12		0.011002761	[0.0079-0.0141] unit increase	NR [NR]	N
603	chr6_mcf_hap5	2480077	2480078	rs3131006	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mononucleosis	17,457 European ancestry cases, 68,446 European ancestry controls	NA	6p21.33	NR	rs3131006-?	NR	3E-6		0.0727	[0.042-0.103] unit decrease	Illumina [at least 560000] (imputed)	N
603	chr6_mcf_hap5	2480676	2480677	rs3132541	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental longevity (mother's age at death)	52,776 middle-aged British individuals	NA	6p21.33	NR	rs3132541-?	NR	5E-6		0.032324	[0.018-0.046] unit increase	Affymetrix [9658292] (imputed)	N
603	chr6_mcf_hap5	2481181	2481182	rs143933372	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Creatinine levels	142,097 Japanese ancestry individuals	NA	6p21.33	PSORS1C1	rs143933372-?	NR	2E-8		0.03607	[0.024-0.049] unit decrease novel	Illumina [6108953] (imputed)	N
603	chr6_mcf_hap5	2481520	2481521	rs4959053	23001997	Hou S	2012-12-06	Arthritis Rheum	Identification of a susceptibility locus in STAT4 for Behcet's disease in Han Chinese in a genome-wide association study.	Behcet's disease	147 Han Chinese ancestry cases, 951 Han Chinese ancestry controls	554 Han Chinese ancestry cases, 1,159 Han Chinese ancestry controls	6p21.33	PSORS1C1	rs4959053-?	.11	2E-20		4.38	[3.20-5.99]	Affymetrix [661736]	N
603	chr6_mcf_hap5	2482569	2482569	rs548139121	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	PSORS1C1	rs548139121-TAA	NR	4E-8		0.0196747	[0.013-0.027] unit increase	Affymetrix [323123] (imputed)	N
603	chr6_mcf_hap5	2482885	2482886	rs3823418	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals, at least 88,461 European ancestry individuals	NA	6p21.33	PSORS1C1	rs3823418-A	0.1032	2E-7	(Japanese)	0.0338	[0.021-0.047] unit decrease	Illumina [1986983] (imputed)	N
603	chr6_mcf_hap5	2482885	2482886	rs3823418	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	6p21.33	PSORS1C1	rs3823418-A	0.15	2E-7		0.026	[0.0084-0.0436] unit increase	Affymetrix, Illumina [2704730] (imputed)	N
603	chr6_mcf_hap5	2483369	2483370	rs3132569	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PSORS1C1	rs3132569-A	NR	2E-10		0.022581	[0.016-0.03] unit decrease	Affymetrix [321016] (imputed)	N
603	chr6_mcf_hap5	2483526	2483527	rs4294047	33841421	Li J	2021-03-25	Front Immunol	Variants at the MHC Region Associate With Susceptibility to <i>Clostridioides difficile</i> Infection: A Genome-Wide Association Study Using Comprehensive Electronic Health Records.	Clostridioides difficle infection in antibiotics-users	587 European ancestry cases, 3,166 European ancestry controls	NA	6p21.33	PSORS1C2	rs4294047-A	0.103	8E-6		1.53	[1.28-1.8]	Illumina [64973696] (imputed)	N
603	chr6_mcf_hap5	2483617	2483618	rs3130564	25827949	Kunz M	2015-05-04	Exp Dermatol	Genome-wide association study identifies new susceptibility loci for cutaneous lupus erythematosus.	Cutaneous lupus erythematosus	151 European ancestry cases, 1,288 European ancestry controls	219 European ancestry cases, 262 European ancestry controls	6p21.33	PSORS1C1	rs3130564-T	0.163	4E-10		2.05	[1.56-2.70]	Affymetrix [906600]	N
603	chr6_mcf_hap5	2483617	2483618	rs3130564	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.33	PSORS1C1	rs3130564-T	0.1934	1E-42		2.62	[NR]	Illumina [242824]	N
603	chr6_mcf_hap5	2484216	2484217	rs75881311	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.33	NR	rs75881311-A	0.082	3E-13	(conditional)	1.279	[1.21-1.35]	Illumina [11270530] (imputed)	N
603	chr6_mcf_hap5	2484248	2484249	rs61444472	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	683 Turkish ancestry cases, 1,721 Turkish ancestry controls	NA	6p21.33	PSORSIC1	rs61444472-?	NR	2E-17	(conditional on rs2844678 and rs9262437)			Illumina [4495750] (imputed)	N
603	chr6_mcf_hap5	2484907	2484908	rs3132565	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	6p21.33	NR	rs3132565-A	NR	1E-9		1.07	[NR]	Illumina [7158791] (imputed)	N
603	chr6_mcf_hap5	2485138	2485139	rs3094669	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	6p21.33	NR	rs3094669-G	0.135689518720733	6E-9		0.015982522	[0.011-0.021] unit decrease	NR [NR]	N
603	chr6_mcf_hap5	2485532	2485533	rs13198298	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	6p21.33	NR	rs13198298-T	0.101343027086662	2E-12		0.010678657	[0.0077-0.0137] unit increase	NR [NR]	N
603	chr6_mcf_hap5	2485532	2485533	rs13198298	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	6p21.33	NR	rs13198298-T	0.101343027086662	3E-12		0.01306148	[0.0094-0.0167] unit increase	NR [NR]	N
603	chr6_mcf_hap5	2485532	2485533	rs13198298	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	6p21.33	NR	rs13198298-T	0.101343027086662	6E-12		0.013910175	[0.0099-0.0179] unit increase	NR [NR]	N
603	chr6_mcf_hap5	2486004	2486005	rs1265101	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PSORS1C1	rs1265101-A	NR	5E-12		0.058179	[0.042-0.075] unit decrease	Affymetrix [321016] (imputed)	N
603	chr6_mcf_hap5	2486537	2486538	rs28732100	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Subjective well-being (MTAG)	388,538 European ancestry individuals	NA	6p21.33	NR	rs28732100-C	0.9494	2E-8		0.0245	[0.016-0.033] unit increase	Illumina [NR] (imputed)	N
603	chr6_mcf_hap5	2486537	2486538	rs28732100	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Neuroticism (MTAG)	168,105 European ancestry individuals	NA	6p21.33	NR	rs28732100-C	0.9458	2E-8		0.037	[0.024-0.05] unit decrease	Illumina [NR] (imputed)	N
603	chr6_mcf_hap5	2486537	2486538	rs28732100	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms (MTAG)	354,862 European ancestry individuals	NA	6p21.33	NR	rs28732100-C	0.9481	2E-9		0.0293	[0.02-0.039] unit decrease	Illumina [NR] (imputed)	N
603	chr6_mcf_hap5	2486799	2486800	rs3094665	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	PSORS1C1	rs3094665-C	NR	1E-8		0.020395	[0.013-0.027] unit decrease	Affymetrix [323123] (imputed)	N
603	chr6_mcf_hap5	2487209	2487210	rs3132559	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PSORS1C1	rs3132559-G	NR	2E-8		0.0159183	[0.01-0.021] unit decrease	Affymetrix [321016] (imputed)	N
603	chr6_mcf_hap5	2487209	2487210	rs3132559	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	PSORS1C1	rs3132559-G	NR	2E-9		0.0185127	[0.012-0.025] unit decrease	Affymetrix [323123] (imputed)	N
603	chr6_mcf_hap5	2487254	2487255	rs1265100	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6p21.33		rs1265100-?	NR	8E-13		0.894617	[0.86-0.93]	NR [685523]	N
603	chr6_mcf_hap5	2487357	2487358	rs1265099	30626913	Amare AT	2019-01-09	Mol Psychiatry	Bivariate genome-wide association analyses of the broad depression phenotype combined with major depressive disorder, bipolar disorder or schizophrenia reveal eight novel genetic loci for depression.	Broad depression or schizophrenia	9,240 European ancestry broad depression cases, 9,519 European ancestry broad depression controls, 51,258 European ancestry individuals, 36,989 European and East Asian ancestry schizophrenia cases, 113,075 European and East Asian ancestry schizophrenia controls	322,580 individuals	6p21.33	PSORS1C2	rs1265099-A	0.41	2E-10				Affymetrix, Illumina [at least 918921] (imputed)	N
603	chr6_mcf_hap5	2487577	2487578	rs2074478	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.33		rs2074478-T	0.809793	4E-16		1.0453895	[1.03-1.05]	Affymetrix, Illumina [9851866] (imputed)	N
603	chr6_mcf_hap5	2488212	2488213	rs3130573	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	PSORS1C1, PSORS1C2	rs3130573-G	NR	1E-9		0.0200379	[0.014-0.026] unit decrease	Affymetrix [323858] (imputed)	N
603	chr6_mcf_hap5	2488212	2488213	rs3130573	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	PSORS1C1, PSORS1C2	rs3130573-G	NR	3E-9		0.0196118	[0.013-0.026] unit decrease	Affymetrix [127266] (imputed)	N
603	chr6_mcf_hap5	2488212	2488213	rs3130573	21750679	Allanore Y	2011-07-07	PLoS Genet	Genome-wide scan identifies TNIP1, PSORS1C1, and RHOB as novel risk loci for systemic sclerosis.	Systemic sclerosis	564 European ancestry cases, 1,776 European ancestry controls	1,682 European ancestry cases, 3,926 European ancestry controls	6p21.33	PSORS1C1	rs3130573-G	0.32	6E-10		1.25	[1.17-1.35]	Illumina [489814]	N
603	chr6_mcf_hap5	2488403	2488404	rs1265097	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PSORS1C1, PSORS1C2	rs1265097-A	NR	3E-9		0.0309409	[0.021-0.041] unit increase	Affymetrix [319769] (imputed)	N
603	chr6_mcf_hap5	2488403	2488404	rs1265097	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	PSORS1C1, PSORS1C2	rs1265097-A	NR	4E-8		0.0285098	[0.018-0.039] unit increase	Affymetrix [319769] (imputed)	N
603	chr6_mcf_hap5	2488403	2488404	rs1265097	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PSORS1C1, PSORS1C2	rs1265097-A	NR	3E-15		0.0410297	[0.031-0.051] unit decrease	Affymetrix [321016] (imputed)	N
603	chr6_mcf_hap5	2488403	2488404	rs1265097	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	PSORS1C1, PSORS1C2	rs1265097-A	NR	7E-10		0.0349645	[0.024-0.046] unit decrease	Affymetrix [323123] (imputed)	N
603	chr6_mcf_hap5	2488403	2488404	rs1265097	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	6p21.33	PSORS1C1	rs1265097-C	0.917203	7E-18		0.0323248	[0.025-0.04] unit decrease	Affymetrix [NR] (imputed)	N
603	chr6_mcf_hap5	2488403	2488404	rs1265097	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	6p21.33	NR	rs1265097-?	NR	8E-7		0.04125219	[0.025-0.058] unit decrease	Illumina [34656550] (imputed)	N
603	chr6_mcf_hap5	2488403	2488404	rs1265097	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.33	PSORS1C2, PSORS1C1	rs1265097-A	0.1234	1E-10		0.072	[0.05-0.094] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
603	chr6_mcf_hap5	2488403	2488404	rs1265097	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	6p21.33	PSORS1C1, PSORS1C2	rs1265097-A	0.115	2E-32		0.059	[0.049-0.069] unit decrease	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
603	chr6_mcf_hap5	2488433	2488434	rs1265096	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	6p21.33	NR	rs1265096-?		7E-9	(SFTPD)	0.3365	[NR] unit increase	Illumina [NR]	N
603	chr6_mcf_hap5	2488550	2488551	rs16898823	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals	at least 101,293 European ancestry individuals	6p21.33	PSORS1C1, PSORS1C2	rs16898823-A	0.9	3E-8	(Japanese)	0.037	[0.023-0.051] unit increase	Illumina [5864938] (imputed)	N
603	chr6_mcf_hap5	2489131	2489132	rs1265093	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PSORS1C1	rs1265093-A	NR	2E-11		0.0205689	[0.015-0.027] unit increase	Affymetrix [319769] (imputed)	N
603	chr6_mcf_hap5	2489131	2489132	rs1265093	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	PSORS1C1	rs1265093-A	NR	1E-10		0.0198483	[0.014-0.026] unit increase	Affymetrix [319769] (imputed)	N
603	chr6_mcf_hap5	2489131	2489132	rs1265093	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	PSORS1C1	rs1265093-A	NR	2E-11		0.0223747	[0.016-0.029] unit decrease	Affymetrix [323123] (imputed)	N
603	chr6_mcf_hap5	2489131	2489132	rs1265093	23144326	Kim DK	2012-11-09	Am J Respir Crit Care Med	Genome-wide association analysis of blood biomarkers in chronic obstructive pulmonary disease.	Chronic obstructive pulmonary disease-related biomarkers	Up to 1,951 European ancestry smokers	NA	6p21.33	PSORS1C1, CCHCR1	rs1265093-A	0.26	6E-9	(SP-D)			Illumina [588352]	N
603	chr6_mcf_hap5	2489202	2489203	rs2285803	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PSORS1C1	rs2285803-T	NR	3E-8		0.0173578	[0.011-0.023] unit decrease	Affymetrix [319769] (imputed)	N
603	chr6_mcf_hap5	2489202	2489203	rs2285803	33875642	Duran-Lozano L	2021-04-19	Blood Cancer J	Germline variants at SOHLH2 influence multiple myeloma risk.	Multiple myeloma	4,376 European ancestry cases, 345,887 European ancestry controls	5,598 European ancestry cases, 15,261 European ancestry controls	6p21.33	PSORS1C2	rs2285803-T	0.26	1E-11		1.17	[NR]	Illumina [33000000] (imputed)	N
603	chr6_mcf_hap5	2489202	2489203	rs2285803	23955597	Chubb D	2013-08-18	Nat Genet	Common variation at 3q26.2, 6p21.33, 17p11.2 and 22q13.1 influences multiple myeloma risk.	Multiple myeloma	2,335 European ancestry cases, 7,306 European ancestry controls	2,357 European ancestry cases, 3,684 European ancestry controls	6p21.33	PSORS1C1, CCHCR1, TCF19, POU5F1, CDSN	rs2285803-A	0.32	1E-10		1.192	[1.13-1.26]	Illumina [414804]	N
603	chr6_mcf_hap5	2490073	2490074	rs1265091	32769997	Zhou W	2020-08-07	Nat Commun	GWAS of thyroid stimulating hormone highlights pleiotropic effects and inverse association with thyroid cancer.	Thyroid stimulating hormone levels	119,715 European ancestry individuals	NA	6p21.33	PSORS1C1	rs1265091-T	0.187386210350798	5E-15		0.0553	[0.041-0.069] SD increase	Illumina [22400000] (imputed)	N
603	chr6_mcf_hap5	2490073	2490074	rs1265091	30367059	Teumer A	2018-10-26	Nat Commun	Genome-wide analyses identify a role for SLC17A4 and AADAT in thyroid hormone regulation.	Thyroid stimulating hormone levels	54,288 European ancestry individuals	up to 22,383 European ancestry individuals	6p21.33	PSORS1C1	rs1265091-T	0.2	5E-15		0.058	[0.044-0.072] unit increase	Affymetrix, Illumina [8048941] (imputed)	N
604	chr6_mcf_hap5	2491480	2491481	rs9263737	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Lymphocyte counts	62,076 Japanese ancestry individuals	NA	6p21.33	NR	rs9263737-?	NR	4E-8		0.03399	[0.022-0.046] unit decrease novel	Illumina [6108953] (imputed)	N
604	chr6_mcf_hap5	2491817	2491818	rs1265086	33143745	Andlauer TFM	2020-11-04	BMC Med	Treatment- and population-specific genetic risk factors for anti-drug antibodies against interferon-beta: a GWAS.	Binding antibody response to interferon beta therapy in multiple sclerosis (antibody levels; all treatment preparations)	up to 2,000 German and Swedish ancestry individuals	up to 757 German and Swedish ancestry individuals	6p21.33		rs1265086-T	0.38	5E-9	(conditional on rs9272071 + rs28746882)	0.15234222	[-0.1--0.2] unit decrease	Illumina [8550834] (imputed)	N
604	chr6_mcf_hap5	2493291	2493292	rs9263739	19915573	Asano K	2009-11-15	Nat Genet	A genome-wide association study identifies three new susceptibility loci for ulcerative colitis in the Japanese population.	Ulcerative colitis	376 Japanese ancestry cases, 934 Japanese ancestry controls	376 Japanese ancestry cases, 1,097 Japanese ancestry controls	6p21.33	HLA	rs9263739-T	0.15	4E-67		2.73	[2.43-3.07]	Illumina [513923]	N
604	chr6_mcf_hap5	2493610	2493611	rs1265081	32276964	Shete S	2020-04-10	Cancer Res	A genome-wide association study identifies two novel susceptible regions for squamous cell carcinoma of the head and neck.	Head and neck squamous cell carcinoma	2,171 European ancestry cases, 4,493 European ancestry controls	5,205 European ancestry cases, 3,232 European ancestry controls	6p21.33	CCHCR1	rs1265081-A	0.52	4E-10		1.1764705	[1.11-1.23]	Illumina [7858089] (imputed)	N
604	chr6_mcf_hap5	2494010	2494011	rs1265080	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Non-Hodgkin's lymphoma	2,400 European ancestry cases, 410,350 European ancestry controls	NA	6p21.33		rs1265080-A	NR	2E-8		1.1785504	NR	Affymetrix [7846216] (imputed)	N
604	chr6_mcf_hap5	2495048	2495049	rs1265075	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6p21.33	CCHCR1	rs1265075-A	0.076201	5E-17		0.037481945	[0.029-0.046] unit increase	Affymetrix [93095623] (imputed)	N
604	chr6_mcf_hap5	2495048	2495049	rs1265075	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	6p21.33	CCHCR1	rs1265075-A	0.076277	4E-25		0.04465471	[0.036-0.053] unit decrease	Affymetrix [93095623] (imputed)	N
604	chr6_mcf_hap5	2495048	2495049	rs1265075	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6p21.33	CCHCR1	rs1265075-A	0.076136	8E-24		0.044859033	[0.036-0.054] unit decrease	Affymetrix [93095623] (imputed)	N
604	chr6_mcf_hap5	2495048	2495049	rs1265075	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	6p21.33	CCHCR1	rs1265075-A	0.07622	8E-10		0.026229646	[0.018-0.035] unit increase	Affymetrix [93095623] (imputed)	N
604	chr6_mcf_hap5	2495210	2495211	rs886401	33143745	Andlauer TFM	2020-11-04	BMC Med	Treatment- and population-specific genetic risk factors for anti-drug antibodies against interferon-beta: a GWAS.	Binding antibody response to interferon beta therapy in multiple sclerosis (antibody levels; IFN?-1a subcutaneous and intramuscular)	up to 2,000 German and Swedish ancestry individuals	up to 757 German and Swedish ancestry individuals	6p21.33		rs886401-A	NR	4E-12		0.24661802	[0.18-0.32] unit increase	Illumina [8550834] (imputed)	N
604	chr6_mcf_hap5	2496835	2496836	rs2240060	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals, 6,795 African American individuals, 6,324 East Asian ancestry individuals, 2,335 South Asian ancestry individuals, 1,442 Hispanic individuals	NA	6p21.33	CCHCR1	rs2240060-A	NR	3E-10		0.0137	[0.0094-0.018] unit increase	Affymetrix, Illumina [8034757] (imputed)	N
604	chr6_mcf_hap5	2496835	2496836	rs2240060	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals	NA	6p21.33	CCHCR1	rs2240060-A	0.2881	6E-10		0.0136336	[0.0093-0.018] unit increase	Affymetrix, Illumina [8603712] (imputed)	N
604	chr6_mcf_hap5	2496835	2496836	rs2240060	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Microalbuminuria	51,861 European, African American, East Asian, South Asian or Hispanic ancestry cases, 297,093 European, African American, East Asian, South Asian or Hispanic ancestry controls	NA	6p21.33	CCHCR1	rs2240060-A	NR	4E-7		1.0380044	[1.02-1.05]	Affymetrix, Illumina [8326000] (imputed)	N
604	chr6_mcf_hap5	2498137	2498138	rs130071	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.33		rs130071-A	NR	3E-11		1.1198208	[1.08-1.16]	Affymetrix [7846216] (imputed)	N
604	chr6_mcf_hap5	2498137	2498138	rs130071	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6p21.33	NR	rs130071-G	0.7038	3E-16		1.0548522	[1.04-1.07]	Affymetrix [15688218] (imputed)	N
604	chr6_mcf_hap5	2498453	2498454	rs3132535	27363682	Mitchell JS	2016-07-01	Nat Commun	Genome-wide association study identifies multiple susceptibility loci for multiple myeloma.	Multiple myeloma	7,319 European ancestry cases, 234,385 European ancestry controls	2,547 European ancestry cases, 4,803 European ancestry controls	6p21.33	NR	rs3132535-A		3E-17		1.2	[1.15-1.25]	Illumina [at least 7182761] (imputed)	N
604	chr6_mcf_hap5	2498554	2498555	rs3131014	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	CCHCR1	rs3131014-A	NR	1E-8		0.0188268	[0.012-0.025] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_mcf_hap5	2498554	2498555	rs3131014	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	CCHCR1	rs3131014-A	NR	2E-11		0.0223184	[0.016-0.029] unit decrease	Affymetrix [321016] (imputed)	N
604	chr6_mcf_hap5	2498554	2498555	rs3131014	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	CCHCR1	rs3131014-A	NR	7E-15		0.0280938	[0.021-0.035] unit decrease	Affymetrix [323123] (imputed)	N
604	chr6_mcf_hap5	2498666	2498667	rs9263761	33239696	Steinthorsdottir V	2020-11-25	Nat Commun	Genetic predisposition to hypertension is associated with preeclampsia in European and Central Asian women.	Preeclampsia (maternal genotype effect)	2,296 Central Asian ancestry cases, 2,059 Central Asian ancestry controls, 7,219 European ancestry cases, 155,660 European ancestry controls	592 Kazakh ancestry cases, 361 Kazakh ancestry controls, 2,043 European ancestry cases, 6,018 European ancestry controls	6p21.33		rs9263761-G	0.76	2E-6		1.11	[1.06-1.16]	Illumina [11796347] (imputed)	N
604	chr6_mcf_hap5	2499003	2499004	rs1265115	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	CCHCR1	rs1265115-A	NR	6E-9		0.0193434	[0.013-0.026] unit decrease	Affymetrix [323123] (imputed)	N
604	chr6_mcf_hap5	2499947	2499948	rs1265112	21810746	Chantarangsu S	2011-08-01	Clin Infect Dis	Genome-wide association study identifies variations in 6p21.3 associated with nevirapine-induced rash.	Nevirapine-induced rash	72 Thai ancestry nevirapine-induced rash HIV cases, 77 Thai ancestry nevirapine-tolerant rash HIV cases	88 Thai ancestry nevirapine-induced rash HIV cases, 145 Thai ancestry nevirapine-tolerant HIV cases		CCHCR1	rs1265112-G	0.06	1E-8		4.36	[2.58-7.36]	Illumina [499730]	N
604	chr6_mcf_hap5	2500439	2500440	rs130067	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	6p21.33	NR	rs130067-G	0.2	2E-7		1.05	[1.03-1.07]	Illumina [20370935] (imputed)	N
604	chr6_mcf_hap5	2500439	2500440	rs130067	21743467	Kote-Jarai Z	2011-07-10	Nat Genet	Seven prostate cancer susceptibility loci identified by a multi-stage genome-wide association study.	Prostate cancer	6,621 European ancestry cases, 6,939 European ancestry controls	22,957 European ancestry cases, 23,234 European ancestry controls, 420 East Asian ancestry cases, 433 East Asian ancestry controls, 112 African American cases, 298 African American controls, 7,140 cases, 5,455 controls	6p21.33	CCHCR1	rs130067-G	0.21	3E-8		1.05	[1.02-1.09]	NR [2600000] (imputed)	N
604	chr6_mcf_hap5	2501797	2501798	rs1265108	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	CCHCR1	rs1265108-T	NR	1E-8		0.0172707	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_mcf_hap5	2501797	2501798	rs1265108	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	CCHCR1	rs1265108-T	NR	1E-12		0.0213867	[0.015-0.027] unit decrease	Affymetrix [321016] (imputed)	N
604	chr6_mcf_hap5	2501797	2501798	rs1265108	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	CCHCR1	rs1265108-T	NR	8E-15		0.0255848	[0.019-0.032] unit decrease	Affymetrix [323123] (imputed)	N
604	chr6_mcf_hap5	2503366	2503367	rs143334143	33307546	Pairo-Castineira E	2020-12-11	Nature	Genetic mechanisms of critical illness in Covid-19.	COVID-19 (critical illness vs population)	2,804 European ancestry cases, 2,415 European, South Asian and Hispanic or Latin American ancestry cases, 687,911 European ancestry controls, 477,741 European, South Asian and Hispanic or Latin American ancestry controls	NA	6p21.33		rs143334143-A	NR	2E-10		1.3	[1.27-1.48]	Illumina [NR] (imputed)	N
604	chr6_mcf_hap5	2504438	2504439	rs130065	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8 on CD28+ CD45RA+ CD8+ T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs130065-A	0.16421	1E-14		0.3127	[0.23-0.39] unit decrease	Illumina [17954496] (imputed)	N
604	chr6_mcf_hap5	2510285	2510286	rs9263789	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	TCF19	rs9263789-A	NR	3E-9		0.0228494	[0.015-0.03] unit increase	Affymetrix [321169] (imputed)	N
604	chr6_mcf_hap5	2510508	2510509	rs3130934	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	6p21.33		rs3130934-A	0.315939	3E-10		0.028368	[0.02-0.037] unit increase	NR [11722792] (imputed)	N
604	chr6_mcf_hap5	2510508	2510509	rs3130934	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	6p21.33		rs3130934-A	0.315939	3E-9		0.0263765	[0.018-0.035] unit increase	NR [11722792] (imputed)	N
604	chr6_mcf_hap5	2511231	2511232	rs7750641	33909500	Moll M	2021-04-28	Am J Physiol Lung Cell Mol Physiol	A Systematic Analysis of Protein-altering Exonic Variants in Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease	up to 31,465 European ancestry cases, up to 203,688 European ancestry controls, up to 1,413 African ancestry cases, up to 6,080 African ancestry controls, up to 287 East Asian ancestry cases, up to 7,484 East Asian ancestry controls, up to 61 Hispanic cases, up to 613 Hispanic controls	NA	6p21.33	TCF19	rs7750641-T	0.15	1E-12		1.11	[1.08 -1.14]	Illumina [at least 109036]	N
604	chr6_mcf_hap5	2511231	2511232	rs7750641	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.33	TCF19	rs7750641-T	0.1263	3E-58		3.35	[NR]	Illumina [242824]	N
604	chr6_mcf_hap5	2511537	2511538	rs2073721	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes (adjusted for BMI)	up to 48,286 European ancestry cases, up to 250,671 European ancestry controls	NA	6p21.33	MHC	rs2073721-G	0.742	6E-10		1.04	[1.03-1.06]	Affymetrix, Illumina [247470]	N
604	chr6_mcf_hap5	2511537	2511538	rs2073721	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes (adjusted for BMI)	48,286 European ancestry cases, 250,671 European ancestry controls, 33,126 African American, East Asian, Hispanic/Latino or South Asian cases, 120,161 African American, East Asian, Hispanic/Latino or South Asian controls	NA	6p21.33	MHC	rs2073721-G	0.749	2E-9		1.04	[1.02-1.05]	Affymetrix, Illumina [247470]	N
604	chr6_mcf_hap5	2511537	2511538	rs2073721	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes	up to 48,286 European ancestry cases, up to 250,671 European ancestry controls	NA	6p21.33	MHC	rs2073721-G	0.742	6E-9		1.04	[1.02-1.06]	Affymetrix, Illumina [247470]	N
604	chr6_mcf_hap5	2511537	2511538	rs2073721	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes	48,286 European ancestry cases, 250,671 European ancestry controls, 33,126 African American, East Asian, Hispanic/Latino or South Asian cases, 120,161 African American, East Asian, Hispanic/Latino or South Asian controls	NA	6p21.33	MHC	rs2073721-G	0.749	2E-10		1.04	[1.02-1.05]	Affymetrix, Illumina [247470]	N
604	chr6_mcf_hap5	2512514	2512515	rs1419881	25802187	Jiang DK	2015-04-28	Hepatology	Genetic variants in five novel loci including CFB and CD40 predispose to chronic hepatitis B.	Chronic hepatitis B infection	2,514 Chinese ancestry cases, 1,130 Chinese ancestry controls	6,600 Chinese ancestry cases, 8,127 Chinese ancestry controls	6p21.33	TCF19	rs1419881-G	0.55	3E-7		1.12	[1.08-1.18]	Illumina [3680900] (imputed)	N
604	chr6_mcf_hap5	2512514	2512515	rs1419881	23760081	Kim YJ	2013-06-10	Hum Mol Genet	A genome-wide association study identified new variants associated with the risk of chronic hepatitis B.	Chronic hepatitis B infection	400 Korean ancestry cases, 1,000 Korean ancestry controls	971 Korean ancestry cases, 1,938 Korean ancestry controls	6p21.33	TCF19	rs1419881-?	NR	1E-18		1.37	[1.23-1.52]	Illumina [719265]	N
604	chr6_mcf_hap5	2513366	2513367	rs182661945	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	6p21.33	NR	rs182661945-?	NR	2E-9		5.977	NR z score increase	Illumina [at least 830937] (imputed)	N
604	chr6_mcf_hap5	2514007	2514008	rs3130933	33649182	Penova M	2021-03-01	Proc Natl Acad Sci U S A	Genome wide association study of HTLV-1-associated myelopathy/tropical spastic paraparesis in the Japanese population.	HTLV-1 associated myelopathy	731 Japanese ancestry cases, 846 Japanese ancestry controls	NA	6p21.33		rs3130933-T	0.04	5E-9		2.44	[1.81-3.29]	Illumina [126394]	N
604	chr6_mcf_hap5	2516825	2516826	rs3130931	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	6p21.33	NR	rs3130931-C	0.6765	2E-32		0.0482	[0.04-0.056] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
604	chr6_mcf_hap5	2516825	2516826	rs3130931	21801394	Genin E	2011-07-29	Orphanet J Rare Dis	Genome-wide association study of Stevens-Johnson Syndrome and Toxic Epidermal Necrolysis in Europe.	Drug-induced Stevens-Johnson syndrome or toxic epidermal necrolysis (SJS/TEN)	424 European ancestry cases, 1,881 European ancestry controls	NA	6p21.33	POU5F1	rs3130931-C	0.69	8E-7		1.54	[1.29-1.84]	Illumina [268914]	N
604	chr6_mcf_hap5	2517927	2517928	rs185402687	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	6p21.33	POU5F1	rs185402687-C	0.0157	6E-14		0.1102721	[0.081-0.139] unit decrease	Affymetrix [~ 2500000] (imputed)	N
604	chr6_mcf_hap5	2518390	2518391	rs3130501	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	6p21.33	POU5F1	rs3130501-G	0.7833	6E-9	(EA)	0.0693	[0.046-0.093] unit increase	Affymetrix, Illumina [NR] (imputed)	N
604	chr6_mcf_hap5	2518390	2518391	rs3130501	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	6p21.33	POU5F1	rs3130501-G	0.7833	4E-12		0.063	[0.045-0.081] unit increase	Affymetrix, Illumina [NR] (imputed)	N
604	chr6_mcf_hap5	2518390	2518391	rs3130501	21801394	Genin E	2011-07-29	Orphanet J Rare Dis	Genome-wide association study of Stevens-Johnson Syndrome and Toxic Epidermal Necrolysis in Europe.	Drug-induced Stevens-Johnson syndrome or toxic epidermal necrolysis (SJS/TEN)	424 European ancestry cases, 1,881 European ancestry controls	NA	6p21.33	POU5F1	rs3130501-G	0.74	2E-8		1.74	[1.43-2.13]	Illumina [268914]	N
604	chr6_mcf_hap5	2518651	2518652	rs3132524	24509480	Mahajan A	2014-02-09	Nat Genet	Genome-wide trans-ancestry meta-analysis provides insight into the genetic architecture of type 2 diabetes susceptibility.	Type 2 diabetes	12,171 European ancestry cases, 56,862 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls	21,491 European ancestry cases, 55,647 European ancestry controls	6p21.33	TCF19, POU5F1	rs3132524-G		4E-9		1.07	[1.04-1.09]	Affymetrix, Illumina [2500000] (imputed)	N
604	chr6_mcf_hap5	2520048	2520049	rs1062630	28654678	Mandage R	2017-06-27	PLoS One	Genetic factors affecting EBV copy number in lymphoblastoid cell lines derived from the 1000 Genome Project samples.	Epstein-Barr virus copy number in lymphoblastoid cell lines	389 East Asian ancestry individuals, 189 South Asian ancestry individuals, 492 European ancestry individuals, 467 Sub-Saharan African ancestry individuals, 59 African American individuals, 157 Hispanic/Latino individuals	NA	6p21.33	POU5F1	rs1062630-?	NR	1E-6				NR [at least 880000]	N
604	chr6_mcf_hap5	2521392	2521393	rs879882	31935283	Du Z	2020-01-01	Blood Adv	A meta-analysis of genome-wide association studies of multiple myeloma among men and women of African ancestry.	Multiple myeloma	1,813 African American and African ancestry cases, 8,871 African American and African ancestry controls	NA	6p21.33	NR	rs879882-T	0.45	1E-6		1.2	[1.12-1.29]	Illumina [12683648] (imputed)	N
604	chr6_mcf_hap5	2521392	2521393	rs879882	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	6p21.33	MICA	rs879882-?	NR	2E-7	(Conditioned on rs2256183)		[NR]	Affymetrix, Illumina [2834208] (imputed)	N
604	chr6_mcf_hap5	2521987	2521988	rs1265159	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.33	intergenic	rs1265159-T	0.2191	4E-37		2.42	[NR]	Illumina [242824]	N
604	chr6_mcf_hap5	2522092	2522093	rs885950	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	6p21.33	POU5F1, HCG27, HLA	rs885950-C	0.42	7E-13		1.08	[1.07-1.09]	Illumina [at least 560000] (imputed)	N
604	chr6_mcf_hap5	2522681	2522682	rs1265158	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	POU5F1	rs1265158-G	NR	1E-8		0.0185854	[0.012-0.025] unit decrease	Affymetrix [323858] (imputed)	N
604	chr6_mcf_hap5	2522681	2522682	rs1265158	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	POU5F1	rs1265158-G	NR	3E-8		0.0179118	[0.012-0.024] unit decrease	Affymetrix [127266] (imputed)	N
604	chr6_mcf_hap5	2522681	2522682	rs1265158	28087736	Ludwig KU	2017-01-13	Hum Mol Genet	Imputation of orofacial clefting data identifies novel risk loci and sheds light on the genetic background of cleft lip ? cleft palate and cleft palate only.	Nonsyndromic cleft lip with or without cleft palate	399 European ancestry cases, 1,318 European ancestry controls, 666 European ancestry trios, 795 Asian trios	224 European ancestry cases, 921 European ancestry controls, 152 Mayan cases, 323 Mayan controls, 198 Middle Eastern cases, 391 Middle Eastern controls	6p21.33	NR	rs1265158-?		5E-6	(EA)			NR [8012124] (imputed)	N
604	chr6_mcf_hap5	2522681	2522682	rs1265158	28087736	Ludwig KU	2017-01-13	Hum Mol Genet	Imputation of orofacial clefting data identifies novel risk loci and sheds light on the genetic background of cleft lip ? cleft palate and cleft palate only.	Nonsyndromic cleft lip with or without cleft palate	399 European ancestry cases, 1,318 European ancestry controls, 666 European ancestry trios, 795 Asian trios	224 European ancestry cases, 921 European ancestry controls, 152 Mayan cases, 323 Mayan controls, 198 Middle Eastern cases, 391 Middle Eastern controls	6p21.33	NR	rs1265158-?		3E-6	(All)			NR [8012124] (imputed)	N
604	chr6_mcf_hap5	2523149	2523150	rs2269712	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.33		rs2269712-A	0.249	1E-10				Affymetrix [10369434] (imputed)	N
604	chr6_mcf_hap5	2523149	2523150	rs2269712	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	POU5F1	rs2269712-A	NR	2E-8		0.0181335	[0.012-0.024] unit decrease	Affymetrix [319769] (imputed)	N
604	chr6_mcf_hap5	2523422	2523423	rs116763857	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p21.33	PSORS1C3	rs116763857-G	0.027	1E-14		0.295	[0.22-0.37] unit decrease	Affymetrix, Illumina [7374092] (imputed)	N
604	chr6_mcf_hap5	2524185	2524186	rs3094188	23266558	Yamazaki K	2012-12-21	Gastroenterology	A genome-wide association study identifies 2 susceptibility Loci for Crohn's disease in a Japanese population.	Crohn's disease	372 Japanese ancestry cases,3,389 Japanese ancestry controls	Up to 1,151 Japanese ancestry cases, up to 15,800 Japanese ancestry controls	6p21.33	PSORS1C3	rs3094188-C	0.280	7E-7		1.61	[1.33-1.94]	Illumina [4929034] (imputed)	N
604	chr6_mcf_hap5	2524185	2524186	rs3094188	21801394	Genin E	2011-07-29	Orphanet J Rare Dis	Genome-wide association study of Stevens-Johnson Syndrome and Toxic Epidermal Necrolysis in Europe.	Drug-induced Stevens-Johnson syndrome or toxic epidermal necrolysis (SJS/TEN)	424 European ancestry cases, 1,881 European ancestry controls	NA	6p21.33	POU5F1	rs3094188-A	0.63	3E-8		1.59	[1.34-1.88]	Illumina [268914]	N
604	chr6_mcf_hap5	2525451	2525452	rs887466	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation GrimAge acceleration	34,467 European ancestry individuals	NA	6p21.33	NR	rs887466-A	0.3815	5E-10		0.1928	[0.13-0.25] unit decrease	Affymetrix, Illumina [7568149] (imputed)	N
604	chr6_mcf_hap5	2525522	2525523	rs3131018	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.33		rs3131018-A	0.369	3E-21				Affymetrix [10369434] (imputed)	N
604	chr6_mcf_hap5	2525522	2525523	rs3131018	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p21.33		rs3131018-A	0.369	2E-16				Affymetrix [10369434] (imputed)	N
604	chr6_mcf_hap5	2525522	2525523	rs3131018	21051598	Pereyra F	2010-11-04	Science	The major genetic determinants of HIV-1 control affect HLA class I peptide presentation.	HIV-1 control	516 European cases, 1,196 European controls, 341 African American cases, 892 African American controls, 117 Hispanic cases, 560 Hispanic controls	NA	6p21.33	PSORS1C3	rs3131018-C	0.625	4E-16	(EA)	2.1	[NR]	Illumina [1384048] (imputed)	N
604	chr6_mcf_hap5	2526575	2526576	rs9404937	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	POU5F1, PSORS1C3	rs9404937-A	NR	7E-13		0.0235486	[0.017-0.03] unit decrease	Affymetrix [323123] (imputed)	N
604	chr6_mcf_hap5	2529426	2529427	rs3130507	29227965	Pilling LC	2017-12-01	Aging (Albany NY)	Human longevity: 25 genetic loci associated in 389,166 UK biobank participants.	Parental longevity (mother's attained age)	412,937 British ancestry individuals	NA	6p21.33	PSORS1C3	rs3130507-G	0.72	2E-10		0.0155	[0.011-0.02] unit decrease	Affymetrix [11535925] (imputed)	N
604	chr6_mcf_hap5	2529426	2529427	rs3130507	29227965	Pilling LC	2017-12-01	Aging (Albany NY)	Human longevity: 25 genetic loci associated in 389,166 UK biobank participants.	Parental longevity (combined parental attained age, Martingale residuals)	389,166 British ancestry individuals	NA	6p21.33	PSORS1C3	rs3130507-G	NR	4E-6			[NR]	Affymetrix [11535925] (imputed)	N
604	chr6_mcf_hap5	2536213	2536214	rs7753892	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GNLY	5,366 Icelandic ancestry individuals	NA	6p21.33		rs7753892-C	0.3652	5E-15		0.154032	[0.12-0.19] unit increase	Illumina [7506463] (imputed)	N
604	chr6_mcf_hap5	2536213	2536214	rs7753892	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GNLY	5,366 Icelandic ancestry individuals	NA	6p21.33		rs7753892-C	0.3652	2E-14		0.15056	[0.11-0.19] unit increase	Illumina [7506463] (imputed)	N
604	chr6_mcf_hap5	2536313	2536314	rs13203101	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p21.33	NR	rs13203101-?	NR	3E-15		0.1435	[0.11-0.18] unit decrease	Illumina [at least 560000] (imputed)	N
604	chr6_mcf_hap5	2536385	2536386	rs3130458	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	POU5F1	rs3130458-T	NR	6E-12		0.0238773	[0.017-0.031] unit decrease	Affymetrix [323858] (imputed)	N
604	chr6_mcf_hap5	2536385	2536386	rs3130458	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	POU5F1	rs3130458-T	NR	3E-11		0.0230527	[0.016-0.03] unit decrease	Affymetrix [127266] (imputed)	N
604	chr6_mcf_hap5	2536771	2536772	rs6922051	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	POU5F1	rs6922051-C	NR	7E-12		0.0225553	[0.016-0.029] unit decrease	Affymetrix [323123] (imputed)	N
604	chr6_mcf_hap5	2537739	2537740	rs1265181	30921485	Bejaoui Y	2019-03-28	Exp Dermatol	Genome-wide association study of psoriasis in an Egyptian population.	Psoriasis	215 Egyptian ancestry cases, 416 Egyptian ancestry controls	321 Egyptian ancestry cases, 253 Egyptian ancestry controls	6p21.33	HCG27	rs1265181-?	NR	1E-10		2.0	[1.62-2.45]	Illumina [312245]	N
604	chr6_mcf_hap5	2537739	2537740	rs1265181	19169255	Zhang XJ	2009-01-25	Nat Genet	Psoriasis genome-wide association study identifies susceptibility variants within LCE gene cluster at 1q21.	Psoriasis	1,139 Han Chinese ancestry cases, 1,132 Han Chinese ancestry controls	5,721 Chinese ancestry cases, 7,340 Chinese ancestry controls	6p21.33	MHC	rs1265181-?	NR	2E-208		22.62		Illumina [494902]	N
604	chr6_mcf_hap5	2537995	2537996	rs9368661	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	6p21.33	NR	rs9368661-T	0.258577	1E-19		0.02376896	[0.019-0.029] unit increase	Affymetrix [93095623] (imputed)	N
604	chr6_mcf_hap5	2538140	2538141	rs9263850	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG299F13.17	rs9263850-G	NR	1E-9		0.0190638	[0.013-0.025] unit decrease	Affymetrix [321016] (imputed)	N
604	chr6_mcf_hap5	2538140	2538141	rs9263850	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG299F13.17	rs9263850-G	NR	5E-16		0.0275644	[0.021-0.034] unit decrease	Affymetrix [323123] (imputed)	N
604	chr6_mcf_hap5	2540140	2540141	rs9295958	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG299F13.17	rs9295958-A	NR	1E-10		0.0250366	[0.017-0.033] unit decrease	Affymetrix [323123] (imputed)	N
604	chr6_mcf_hap5	2540517	2540517	rs145171179	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	6p21.33	XXbac-BPG299F13.17	rs145171179-GA	0.212169	4E-9		0.020656763	[0.014-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
604	chr6_mcf_hap5	2540590	2540591	rs9263861	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	6p21.33	HLA region	rs9263861-?	NR	3E-8	(EA)			Affymetrix, Illumina [10537485] (imputed)	N
604	chr6_mcf_hap5	2540590	2540591	rs9263861	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	6p21.33	HLA region	rs9263861-?	NR	3E-8				Affymetrix, Illumina [10537485] (imputed)	N
604	chr6_mcf_hap5	2540789	2540790	rs7741829	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	6p21.33	XXbac-BPG299F13.17	rs7741829-C	0.289979	2E-13		0.019235091	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
604	chr6_mcf_hap5	2540977	2540978	rs7742179	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG299F13.17	rs7742179-A	NR	3E-13		0.0215095	[0.016-0.027] unit decrease	Affymetrix [321016] (imputed)	N
604	chr6_mcf_hap5	2540977	2540978	rs7742179	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG299F13.17	rs7742179-A	NR	9E-21		0.0299448	[0.024-0.036] unit decrease	Affymetrix [323123] (imputed)	N
604	chr6_mcf_hap5	2541769	2541771	rs550239034	31577861	Dai J	2019-10-31	Int J Cancer	Genome-wide association study of INDELs identified four novel susceptibility loci associated with lung cancer risk.	Lung cancer	20,871 European ancestry cases, 15,971 European ancestry controls, 2,331 Chinese ancestry cases, 3,077 Chinese ancestry controls	NA	6p21.33	POU5F1	rs550239034-D	0.25	2E-7		0.92	[0.89-0.95]	Illumina [484196]	N
604	chr6_mcf_hap5	2545928	2545929	rs28749551	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	6p21.33	XXbac-BPG299F13.17	rs28749551-C	0.189749	9E-23		0.029464645	[0.024-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
604	chr6_mcf_hap5	2545928	2545929	rs28749551	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	6p21.33	XXbac-BPG299F13.17	rs28749551-C	0.1902	8E-18		0.03930922	[0.03-0.048] unit decrease	Affymetrix [~ 2500000] (imputed)	N
604	chr6_mcf_hap5	2546735	2546736	rs28362333	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	6p21.33		rs28362333-C	0.530396419	7E-20		0.08448383	[0.066-0.103] unit increase	Illumina [13429769] (imputed)	N
604	chr6_mcf_hap5	2547801	2547802	rs28362345	31935283	Du Z	2020-01-01	Blood Adv	A meta-analysis of genome-wide association studies of multiple myeloma among men and women of African ancestry.	Multiple myeloma	1,813 African American and African ancestry cases, 8,871 African American and African ancestry controls	NA	6p21.33	NR	rs28362345-T	0.7	6E-7		1.24	[1.14-1.34]	Illumina [12683648] (imputed)	N
604	chr6_mcf_hap5	2549999	2550000	rs6903896	20585627	Eriksson N	2010-06-24	PLoS Genet	Web-based, participant-driven studies yield novel genetic associations for common traits.	Common traits (Other)	9,126 European ancestry individuals	NA	6p21.33	NR	rs6903896-?	NR	6E-7	(sneeze)			Illumina [535076]	N
604	chr6_mcf_hap5	2550367	2550368	rs9263868	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p21.33	NR	rs9263868-?	NR	4E-21		0.1525	[0.12-0.18] unit increase	Illumina [at least 560000] (imputed)	N
604	chr6_mcf_hap5	2550672	2550673	rs138864366	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs138864366-C	0.027	4E-32	(Cyclic AMP-responsive element-binding protein 3-like protein 4, CREB3L4.11308.8.3)	1.03	[0.85-1.21] unit increase	Affymetrix [10572788] (imputed)	N
604	chr6_mcf_hap5	2551585	2551586	rs28362359	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs28362359-C	0.875	4E-34				Affymetrix [10369434] (imputed)	N
604	chr6_mcf_hap5	2552029	2552030	rs9263869	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCG27	rs9263869-C	NR	1E-8		0.0173241	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_mcf_hap5	2552029	2552030	rs9263869	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HCG27	rs9263869-C	NR	3E-8		0.0168281	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_mcf_hap5	2552029	2552030	rs9263869	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCG27	rs9263869-C	NR	3E-10		0.0208071	[0.014-0.027] unit decrease	Affymetrix [323123] (imputed)	N
604	chr6_mcf_hap5	2552144	2552145	rs1793899	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCG27	rs1793899-A	NR	2E-14		0.0870835	[0.065-0.109] unit decrease	Affymetrix [321016] (imputed)	N
604	chr6_mcf_hap5	2552241	2552242	rs9366770	30980028	de Kovel CGF	2019-04-12	Sci Rep	The molecular genetics of hand preference revisited.	Handedness (Right-handed vs. non-right-handed)	293,857 British ancestry cases, 37,180 British ancestry controls	NA	6p21.33	HCG27	rs9366770-?	NR	2E-9				Affymetrix [~ 15000000] (imputed)	N
604	chr6_mcf_hap5	2552541	2552542	rs9263871	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	6p21.33	NR	rs9263871-?		2E-14	(MICA)			Illumina [NR]	N
604	chr6_mcf_hap5	2552541	2552542	rs9263871	24925725	Chung SA	2014-06-12	J Am Soc Nephrol	Lupus nephritis susceptibility loci in women with systemic lupus erythematosus.	Lupus nephritis in systemic lupus erythematosus	588 European ancestry cases, 1,412 European ancestry controls	NA	6p21.33	HCG27	rs9263871-G	NR	9E-6	(Dominant)	1.7	[1.35-2.13]	Affymetrix, Illumina [1621689] (imputed)	N
604	chr6_mcf_hap5	2552927	2552928	rs9263875	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HCG27	rs9263875-G	NR	6E-11		0.0190363	[0.013-0.025] unit increase	Affymetrix [321169] (imputed)	N
604	chr6_mcf_hap5	2553955	2553955	rs146660653	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCG27	rs146660653-ATCTAT	NR	4E-8		0.0193068	[0.012-0.026] unit decrease	Affymetrix [323123] (imputed)	N
604	chr6_mcf_hap5	2554164	2554165	rs3132510	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Diastolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	6p21.33	HCG27	rs3132510-C	0.6478	3E-14		0.3056	[0.23-0.38] mmHg increase	Affymetrix [NR] (imputed)	N
604	chr6_mcf_hap5	2554164	2554165	rs3132510	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p21.33	NR	rs3132510-?	NR	1E-7		5.296	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
604	chr6_mcf_hap5	2554164	2554165	rs3132510	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p21.33	NR	rs3132510-?	NR	4E-14		0.2588	[0.19-0.32] unit decrease	Illumina [at least 560000] (imputed)	N
604	chr6_mcf_hap5	2554384	2554385	rs3887381	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCG27	rs3887381-T	NR	8E-14		0.0210107	[0.015-0.027] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_mcf_hap5	2554384	2554385	rs3887381	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HCG27	rs3887381-T	NR	2E-12		0.0197787	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_mcf_hap5	2554384	2554385	rs3887381	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCG27	rs3887381-T	NR	3E-20		0.0282671	[0.022-0.034] unit decrease	Affymetrix [323123] (imputed)	N
604	chr6_mcf_hap5	2556568	2556569	rs2894181	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCG27	rs2894181-G	NR	5E-9		0.0164875	[0.011-0.022] unit decrease	Affymetrix [321016] (imputed)	N
604	chr6_mcf_hap5	2556799	2556800	rs28744239	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p21.33	NR	rs28744239-C	0.147	5E-9	(IFNAR2_of_CD20p)			Illumina [5084123] (imputed)	N
604	chr6_mcf_hap5	2556970	2556971	rs185386680	26599303	Cheung CL	2016-01-12	Clin Pharmacol Ther	HLA-B*38:02:01 predicts carbimazole/methimazole-induced agranulocytosis.	Antithyroid drug-induced agranulocytosis	20 Southern Chinese ancestry cases, 775 East Asian ancestry controls	4 Southern Chinese ancestry cases, 387 East Asian ancestry controls	6p21.33	HLA-B*38:02:01	rs185386680-?	NR	4E-29		24.7	9.2-66.3	Illumina [5339940] (imputed)	N
604	chr6_mcf_hap5	2557990	2557991	rs1619179	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs for peptic ulcer and gastro-oesophageal reflux disease)	53,137 European ancestry cases, 79,230 European ancestry controls, 53,363 East Asian ancestry cases, 125,363 East Asian ancestry controls	NA	6p21.33		rs1619179-C	NR	4E-11		0.0701	[0.049-0.091] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
604	chr6_mcf_hap5	2557990	2557991	rs1619179	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (drugs for peptic ulcer and gastro-oesophageal reflux disease)	53,137 European ancestry cases, 79,230 European ancestry controls	NA	6p21.33	HCG27	rs1619179-C	0.154861	4E-11		0.07005687	[0.049-0.091] unit decrease	Affymetrix [7288503] (imputed)	N
604	chr6_mcf_hap5	2557990	2557991	rs1619179	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p21.33	NR	rs1619179-?	NR	3E-10		0.0882	[0.061-0.116] unit decrease	Illumina [at least 560000] (imputed)	N
604	chr6_mcf_hap5	2558290	2558291	rs4410769	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCG27	rs4410769-T	NR	2E-9		0.0188767	[0.013-0.025] unit increase	Affymetrix [323858] (imputed)	N
604	chr6_mcf_hap5	2558290	2558291	rs4410769	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HCG27	rs4410769-T	NR	3E-8		0.0173066	[0.011-0.023] unit increase	Affymetrix [127266] (imputed)	N
604	chr6_mcf_hap5	2559557	2559558	rs9501519	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCG27	rs9501519-T	NR	3E-11		0.0187496	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_mcf_hap5	2559557	2559558	rs9501519	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HCG27	rs9501519-T	NR	1E-10		0.0181428	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_mcf_hap5	2559705	2559706	rs9501520	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCG27	rs9501520-C	NR	2E-10		0.0200324	[0.014-0.026] unit increase	Affymetrix [323858] (imputed)	N
604	chr6_mcf_hap5	2559705	2559706	rs9501520	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HCG27	rs9501520-C	NR	6E-10		0.0194184	[0.013-0.026] unit increase	Affymetrix [127266] (imputed)	N
604	chr6_mcf_hap5	2560243	2560244	rs17191272	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCG27	rs17191272-C	NR	3E-11		0.020396	[0.014-0.026] unit decrease	Affymetrix [323123] (imputed)	N
604	chr6_mcf_hap5	2561015	2561016	rs36039697	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.33		rs36039697-G	0.748	2E-17				Affymetrix [10369434] (imputed)	N
604	chr6_mcf_hap5	2566224	2566225	rs3869109	22319020	Davies RW	2012-02-07	Circ Cardiovasc Genet	A genome-wide association study for coronary artery disease identifies a novel susceptibility locus in the major histocompatibility complex.	Coronary heart disease	7,123 European ancestry cases, 6,826 European ancestry controls	5,211 European ancestry cases, 5,821 European ancestry controls	6p21.33	HCG27, HLA-C	rs3869109-G	NR	1E-9		1.14	[NR]	Affymetrix [~ 5000000] (imputed)	N
604	chr6_mcf_hap5	2568053	2568054	rs9263963	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs9263963-T	0.113293342563644	1E-6	(IGP23)	0.2567	[0.15-0.36] unit increase	Illumina [~ 2500000] (imputed)	N
604	chr6_mcf_hap5	2569104	2569105	rs3130467	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (mother's age at death or mother's attained age)	up to 699,000 individuals	NA	6p21.33	NR	rs3130467-G		3E-7				Illumina [458525]	N
604	chr6_mcf_hap5	2573327	2573328	rs9263988	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.33		rs9263988-C	0.937	6E-19				Affymetrix [10369434] (imputed)	N
604	chr6_mcf_hap5	2574807	2574808	rs9263993	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	6p21.33	HLA region	rs9263993-?	NR	9E-9	(EA)			Affymetrix, Illumina [10537485] (imputed)	N
604	chr6_mcf_hap5	2574807	2574808	rs9263993	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	6p21.33	HLA region	rs9263993-?	NR	2E-7				Affymetrix, Illumina [10537485] (imputed)	N
604	chr6_mcf_hap5	2574838	2574839	rs6904670	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28- CD8+ T cell %CD8+ T cell	3,440 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs6904670-G	0.64142	3E-8		0.1458	[0.094-0.197] unit decrease	Illumina [18357815] (imputed)	N
604	chr6_mcf_hap5	2577253	2577254	rs6928399	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG299F13.16	rs6928399-T	NR	7E-12		0.0204256	[0.015-0.026] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_mcf_hap5	2577253	2577254	rs6928399	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG299F13.16	rs6928399-T	NR	9E-11		0.0193191	[0.013-0.025] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_mcf_hap5	2577253	2577254	rs6928399	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG299F13.16	rs6928399-T	NR	7E-11		0.0196879	[0.014-0.026] unit increase	Affymetrix [321169] (imputed)	N
604	chr6_mcf_hap5	2578030	2578031	rs7769059	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	6p21.33	HCG27	rs7769059-G	0.716625	1E-12		0.0150833	[0.011-0.019] unit increase	Affymetrix [NR] (imputed)	N
604	chr6_mcf_hap5	2579303	2579304	rs3134783	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Sarcoidosis	1,718 European ancestry cases, 484,955 European ancestry controls, 220 East Asian ancestry cases, 177,667 East Asian ancestry controls	NA	6p21.33		rs3134783-A	NR	6E-9		0.2583	[0.17-0.35] unit increase	Affymetrix, Illumina [25845061] (imputed)	N
604	chr6_mcf_hap5	2579554	2579555	rs3130941	24324648	Yatagai Y	2013-12-04	PLoS One	Genome-wide association study for levels of total serum IgE identifies HLA-C in a Japanese population.	IgE levels	967 Japanese ancestry individuals, 213 Japanese ancestry asthmatic individuals	1,894 Japanese ancestry individuals, 580 Japanese ancestry asthmatic individuals	6p21.33	HCG27, HLA-C	rs3130941-C	0.25	1E-10		0.098	unit increase	Illumina [479940]	N
604	chr6_mcf_hap5	2581245	2581246	rs3130473	29534301	Nishida N	2018-03-13	Hepatology	Key HLA-DRB1-DQB1 haplotypes and role of the BTNL2 gene for response to a hepatitis B vaccine.	Response to hepatitis B vaccine	107 Japanese ancestry low responder individuals, 351 Japanese ancestry intermediate responder individuals, 735 Japanese ancestry high responder individuals	NA	6p21.33	HLA-C	rs3130473-?		8E-6		0.128	unit decrease	Affymetrix [427664]	N
604	chr6_mcf_hap5	2581502	2581503	rs3869114	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.33		rs3869114-G	NR	2E-7		1.204	[1.122-1.292]	Affymetrix [7846216] (imputed)	N
604	chr6_mcf_hap5	2581802	2581803	rs11967684	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	6p21.33	intergenic	rs11967684-A	0.3428	2E-24		0.03858957	[0.031-0.046] unit increase	Affymetrix [~ 2500000] (imputed)	N
604	chr6_mcf_hap5	2581802	2581803	rs11967684	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	6p21.33	intergenic	rs11967684-A	0.3428	1E-29		0.04284561	[0.035-0.05] unit increase	Affymetrix [~ 2500000] (imputed)	N
604	chr6_mcf_hap5	2582800	2582801	rs7757622	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG299F13.16	rs7757622-C	NR	2E-16		0.023531	[0.018-0.029] unit decrease	Affymetrix [321169] (imputed)	N
604	chr6_mcf_hap5	2586706	2586707	rs3869115	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	46,511 Asian ancestry cases, 169,776 Asian ancestry controls	NA	6p21.33	NR	rs3869115-G	0.1981	1E-17		0.1004	[0.077-0.123] unit decrease	Affymetrix, Illumina [1077427] (imputed)	N
604	chr6_mcf_hap5	2586706	2586707	rs3869115	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p21.33	HCG27, HLA-C	rs3869115-C	0.06	6E-7	(Turkish)	2.23	[1.62-3.08]	Illumina [up to 547389]	N
604	chr6_mcf_hap5	2586998	2586999	rs3134770	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p21.33	NR	rs3134770-?	NR	8E-8		0.0723	[0.046-0.099] unit increase	Illumina [at least 560000] (imputed)	N
604	chr6_mcf_hap5	2588217	2588218	rs3130685	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Effector Memory CD8+ T cell Absolute Count	3,395 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs3130685-T	0.34389	2E-8		0.1803	[0.12-0.24] unit increase	Illumina [18332267] (imputed)	N
604	chr6_mcf_hap5	2588217	2588218	rs3130685	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8+ T cell Absolute Count	3,652 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs3130685-T	0.34283	4E-11		0.1887	[0.13-0.24] unit increase	Illumina [18427348] (imputed)	N
604	chr6_mcf_hap5	2588217	2588218	rs3130685	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8+ T cell %leukocyte	3,668 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs3130685-T	0.34283	1E-9		0.1801	[0.12-0.24] unit increase	Illumina [18430788] (imputed)	N
604	chr6_mcf_hap5	2588217	2588218	rs3130685	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28- CD8+ T cell Absolute Count	3,408 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs3130685-T	0.3439	3E-10		0.1894	[0.13-0.25] unit increase	Illumina [18340221] (imputed)	N
604	chr6_mcf_hap5	2588217	2588218	rs3130685	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD127- CD8+ T cell Absolute Count	3,371 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs3130685-T	0.34485	9E-10		0.1905	[0.13-0.25] unit increase	Illumina [18321960] (imputed)	N
604	chr6_mcf_hap5	2589766	2589767	rs9461666	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6p21.33		rs9461666-G	0.021815	7E-10		0.0478569	[0.033-0.063] unit increase	Affymetrix [93095623] (imputed)	N
604	chr6_mcf_hap5	2590055	2590056	rs5875302	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	349,856 European ancestry individuals, 91,908 East Asian ancestry individuals	NA	6p21.33		rs5875302-C	NR	9E-24		0.046	[0.037-0.055] unit decrease	Affymetrix, Illumina [20529536] (imputed)	N
604	chr6_mcf_hap5	2590587	2590588	rs3132497	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG299F13.16	rs3132497-G	NR	3E-9		0.0221455	[0.015-0.029] unit increase	Affymetrix [323123] (imputed)	N
604	chr6_mcf_hap5	2593752	2593753	rs117506082	32072174	Okamoto D	2020-02-19	Inflamm Bowel Dis	Genetic Analysis of Ulcerative Colitis in Japanese Individuals Using Population-specific SNP Array.	Ulcerative colitis	601 Japanese ancestry cases, 1,962 Japanese ancestry controls	1,075 Japanese ancestry cases, 419 Japanese ancestry controls	6p21.33	HLA	rs117506082-G	NR	4E-88		3.39	[2.99-3.83]	NR [4760823] (imputed)	N
604	chr6_mcf_hap5	2593844	2593845	rs1639106	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG299F13.16	rs1639106-T	NR	9E-12		0.0601547	[0.043-0.077] unit decrease	Affymetrix [321016] (imputed)	N
604	chr6_mcf_hap5	2594057	2594058	rs117759870	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs117759870-?		6E-8		1.06	[1.04-1.09]	Illumina [7645193] (imputed)	N
604	chr6_mcf_hap5	2599516	2599517	rs3130427	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	6p21.33		rs3130427-G	0.594789	2E-27		0.029043514	[0.024-0.034] unit increase	Affymetrix [93095623] (imputed)	N
604	chr6_mcf_hap5	2600490	2600491	rs55839536	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs55839536-A	NR	2E-8		0.023416	[0.015-0.032] unit decrease	Affymetrix [321016] (imputed)	N
604	chr6_mcf_hap5	2600772	2600773	rs7449932	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	6p21.33		rs7449932-C	0.223006	2E-9		0.0272642	[0.018-0.036] unit increase	NR [11722792] (imputed)	N
604	chr6_mcf_hap5	2601318	2601319	rs3130436	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	6p21.33	NR	rs3130436-?	NR	4E-7		0.0523	[0.032-0.072] unit decrease	Illumina [at least 560000] (imputed)	N
604	chr6_mcf_hap5	2601318	2601319	rs3130436	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	6p21.33	HCG27, HLA-C	rs3130436-?	NR	4E-7		1.0537407	[1.03-1.08]	Illumina [13754664] (imputed)	N
604	chr6_mcf_hap5	2601558	2601559	rs3130439	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LILRB1	5,363 Icelandic ancestry individuals	NA	6p21.33		rs3130439-G	0.4964	8E-23		0.179906	[0.14-0.22] unit decrease	Illumina [7506463] (imputed)	N
604	chr6_mcf_hap5	2601834	2601835	rs17197839	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-C	rs17197839-A	NR	1E-8		0.0267548	[0.018-0.036] unit decrease	Affymetrix [323123] (imputed)	N
604	chr6_mcf_hap5	2601834	2601835	rs17197839	33549134	Adolphe C	2021-02-06	Genome Med	Genetic and functional interaction network analysis reveals global enrichment of regulatory T cell genes influencing basal cell carcinoma susceptibility.	Basal cell carcinoma	17,416 European ancestry cases, 375,455 European ancestry controls	NA	6p21.33	HLA-C	rs17197839-A	0.118172	3E-11		0.1165139	[0.082-0.151] unit decrease	Affymetrix [7260263] (imputed)	N
604	chr6_mcf_hap5	2601886	2601887	rs1793892	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs1793892-C	NR	2E-9		0.0258258	[0.017-0.034] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_mcf_hap5	2601886	2601887	rs1793892	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-C	rs1793892-C	NR	3E-9		0.0256321	[0.017-0.034] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_mcf_hap5	2601904	2601905	rs17191538	33574277	Kawai Y	2021-02-11	NPJ Genom Med	Mapping of susceptible variants for cold medicine-related Stevens-Johnson syndrome by whole-genome resequencing.	Cold medicine-related Stevens-Johnson syndrome/toxic epidermal necrolysis (SJS/TEN) with severe ocular complications	133 Japanese ancestry cases, 418 Japanese ancestry controls	NA	6p21.33		rs17191538-G	0.2231	7E-7		2.483		Illumina [7608150]	N
604	chr6_mcf_hap5	2602203	2602204	rs3095254	25096241	Keller MF	2014-08-05	Hum Mol Genet	Trans-ethnic meta-analysis of white blood cell phenotypes.	Monocyte count	9,810 Japanese ancestry individuals, 16,550 European ancestry individuals, 7,369 African American individuals	NA	6p21.33	MHC	rs3095254-C	0.461	8E-9	(Japanese)	0.035	[0.023-0.047] unit increase	Illumina [NR] (imputed)	N
604	chr6_mcf_hap5	2602203	2602204	rs3095254	21738478	Okada Y	2011-06-30	PLoS Genet	Identification of nine novel loci associated with white blood cell subtypes in a Japanese population.	White blood cell types	8,794 Japanese ancestry individuals	5,998 Japanese ancestry individuals	6p21.33	MHC	rs3095254-C	0.46	6E-11	(monocyte count)	0.074	[0.05-0.09] unit increase	Illumina [2178645] (imputed)	N
604	chr6_mcf_hap5	2602717	2602718	rs1793889	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.33	CCHCR1, CDSN, HCG27, HLA-C, POU5F1, PSORS1C1, PSORS1C2, PSORS1C3, TCF19	rs1793889-?		1E-11		1.0869565	[1.06-1.11]	Affymetrix, Illumina [NR]	N
604	chr6_mcf_hap5	2605192	2605193	rs9264277	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.33		rs9264277-T	0.367	2E-13				Affymetrix [10369434] (imputed)	N
604	chr6_mcf_hap5	2605192	2605193	rs9264277	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.33		rs9264277-T	0.367	4E-8				Affymetrix [10369434] (imputed)	N
604	chr6_mcf_hap5	2605192	2605193	rs9264277	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.33		rs9264277-T	0.367	2E-36				Affymetrix [10369434] (imputed)	N
604	chr6_mcf_hap5	2605192	2605193	rs9264277	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	6p21.33		rs9264277-T	0.367	1E-9				Affymetrix [10369434] (imputed)	N
604	chr6_mcf_hap5	2605192	2605193	rs9264277	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs9264277-T	0.367	6E-12				Affymetrix [10369434] (imputed)	N
604	chr6_mcf_hap5	2605242	2605243	rs201871433	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	6p21.33		rs201871433-C	0.598843295	3E-14		0.080714226	[0.06-0.101] unit increase	Illumina [13134967] (imputed)	N
604	chr6_mcf_hap5	2607294	2607295	rs2440367	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs2440367-T	NR	4E-8		0.0177003	[0.011-0.024] unit increase	Affymetrix [321016] (imputed)	N
604	chr6_mcf_hap5	2607761	2607762	rs150543164	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	6p21.33	NR	rs150543164-C	0.971256	7E-11		0.0420252	[0.029-0.055] unit decrease	NR [NR]	N
604	chr6_mcf_hap5	2608710	2608711	rs9264354	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	6p21.33		rs9264354-T	0.225	2E-41				Affymetrix [10369434] (imputed)	N
604	chr6_mcf_hap5	2608711	2608712	rs9264355	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs9264355-T	NR	2E-11		0.0253701	[0.018-0.033] unit increase	Affymetrix [321016] (imputed)	N
604	chr6_mcf_hap5	2608882	2608883	rs6939900	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	6p21.33		rs6939900-C	0.644363	2E-13		0.0298309	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
604	chr6_mcf_hap5	2608882	2608883	rs6939900	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	6p21.33		rs6939900-C	0.644357	3E-11		0.0278375	[0.02-0.036] unit decrease	NR [11722792] (imputed)	N
604	chr6_mcf_hap5	2608882	2608883	rs6939900	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.33		rs6939900-T	0.35467	3E-26		0.03356077	[0.027-0.04] unit increase	Affymetrix [93095623] (imputed)	N
604	chr6_mcf_hap5	2609065	2609066	rs17191797	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	6p21.33	intergenic	rs17191797-G	0.0881	1E-10		0.04047984	[0.028-0.053] unit decrease	Affymetrix [~ 2500000] (imputed)	N
604	chr6_mcf_hap5	2610076	2610077	rs2844626	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Varicose veins	22,037 European ancestry cases, 437,665 European ancestry controls, 474 East Asian ancestry cases, 178,252 East Asian ancestry controls	NA	6p21.33		rs2844626-T	NR	1E-10		0.0734	[0.051-0.096] unit decrease	Affymetrix, Illumina [25842955] (imputed)	N
604	chr6_mcf_hap5	2610247	2610248	rs9264408	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs9264408-G	NR	5E-13		0.0253984	[0.019-0.032] unit decrease	Affymetrix [319769] (imputed)	N
604	chr6_mcf_hap5	2610247	2610248	rs9264408	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-C	rs9264408-G	NR	3E-12		0.0245478	[0.018-0.031] unit decrease	Affymetrix [319769] (imputed)	N
604	chr6_mcf_hap5	2610457	2610458	rs9264413	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	6p21.33	intergenic	rs9264413-T	0.8098	4E-40		0.0600596	[0.051-0.069] unit decrease	Affymetrix [~ 2500000] (imputed)	N
604	chr6_mcf_hap5	2610520	2610521	rs17192134	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	6p21.33		rs17192134-G	0.916	3E-52				Affymetrix [10369434] (imputed)	N
604	chr6_mcf_hap5	2610520	2610521	rs17192134	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p21.33	NR	rs17192134-T	0.084521	2E-25		0.048713	[0.04-0.058] unit increase	Affymetrix [93095623] (imputed)	N
604	chr6_mcf_hap5	2610964	2610965	rs17192225	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Prostate cancer	7,438 White British ancestry cases, 118,206 White British ancestry controls	NA	6p21.33		rs17192225-?	NR	2E-6		1.12175	[1.07-1.17]	NR [680312]	N
604	chr6_mcf_hap5	2611243	2611244	rs9357120	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	91,908 East Asian ancestry individuals	NA	6p21.33		rs9357120-A	0.563923	1E-31		0.0533207	[0.044-0.062] unit decrease	Illumina [13469940] (imputed)	N
604	chr6_mcf_hap5	2611243	2611244	rs9357120	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	81,042 East Asian ancestry individuals	NA	6p21.33	NR	rs9357120-T	0.42999	6E-32		0.058958	[0.049-0.069] SD units increase	Affymetrix, Illumina [16286709] (imputed)	N
604	chr6_mcf_hap5	2612514	2612515	rs2853961	31080455	Fatumo S	2019-04-26	Front Genet	Complimentary Methods for Multivariate Genome-Wide Association Study Identify New Susceptibility Genes for Blood Cell Traits.	Blood cell traits (multivariate analysis)	up to 6,407 Sub-Saharan African ancestry individuals	NA	6p21.33	HLA-C	rs2853961-?	NR	4E-8				Illumina [20594536] (imputed)	N
604	chr6_mcf_hap5	2612636	2612637	rs3130542	25802187	Jiang DK	2015-04-28	Hepatology	Genetic variants in five novel loci including CFB and CD40 predispose to chronic hepatitis B.	Chronic hepatitis B infection	2,514 Chinese ancestry cases, 1,130 Chinese ancestry controls	6,600 Chinese ancestry cases, 8,127 Chinese ancestry controls	6p21.33	HLA-C	rs3130542-A	0.16	9E-7		1.17	[1.10-1.24]	Illumina [3680900] (imputed)	N
604	chr6_mcf_hap5	2612636	2612637	rs3130542	24162738	Hu Z	2013-10-27	Nat Genet	New loci associated with chronic hepatitis B virus infection in Han Chinese.	Hepatitis B	951 Han Chinese ancestry HBV carrier cases, 937 Han Chinese ancestry HBV cleared controls	4,230 Chinese ancestry HBV carrier cases, 3,051 Chinese ancestry HBV cleared controls, 2,622 Chinese ancestry controls	6p21.33	HLA-C	rs3130542-A	0.13	9E-14		1.33	[1.23-1.44]	Illumina [490610]	N
604	chr6_mcf_hap5	2612976	2612977	rs2524108	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs2524108-G	NR	1E-9		0.0191519	[0.013-0.025] unit decrease	Affymetrix [319769] (imputed)	N
604	chr6_mcf_hap5	2612976	2612977	rs2524108	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-C	rs2524108-G	NR	4E-9		0.0186193	[0.012-0.025] unit decrease	Affymetrix [319769] (imputed)	N
604	chr6_mcf_hap5	2612976	2612977	rs2524108	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.33	HLA-C	rs2524108-G	0.273435	6E-44		0.050841797	[0.044-0.058] unit decrease	Affymetrix [93095623] (imputed)	N
604	chr6_mcf_hap5	2613096	2613097	rs2844623	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	6p21.33	POU5F1, TCF19	rs2844623-C	0.78	1E-17		1.1	1.08-1.12	Illumina [12557761] (imputed)	N
604	chr6_mcf_hap5	2613377	2613378	rs2524106	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs2524106-A	NR	1E-8		0.0194959	[0.013-0.026] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_mcf_hap5	2613377	2613378	rs2524106	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-C	rs2524106-A	NR	4E-8		0.0188058	[0.012-0.026] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_mcf_hap5	2613463	2613464	rs2524105	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	86,890 East Asian ancestry individuals	NA	6p21.33	NR	rs2524105-G	0.317247	4E-41		0.06908	[0.059-0.079] SD units increase	Affymetrix, Illumina [16279099] (imputed)	N
604	chr6_mcf_hap5	2615033	2615034	rs9264533	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	6p21.33	HLA-C	rs9264533-C	0.8091	4E-33		0.05433897	[0.045-0.063] unit increase	Affymetrix [~ 2500000] (imputed)	N
604	chr6_mcf_hap5	2615180	2615181	rs185207145	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin	108,054 Japanese ancestry individuals	NA	6p21.33	HCG27, HLA-C	rs185207145-?	NR	1E-8		0.05419	[0.036-0.073] unit increase novel	Illumina [6108953] (imputed)	N
604	chr6_mcf_hap5	2615730	2615731	rs113509869	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	6p21.33	HLA-C	rs113509869-A	0.123764	9E-21		0.036061548	[0.029-0.044] unit decrease	Affymetrix [93095623] (imputed)	N
604	chr6_mcf_hap5	2615798	2615799	rs2395470	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs2395470-A	NR	5E-15		0.0233443	[0.017-0.029] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_mcf_hap5	2615798	2615799	rs2395470	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-C	rs2395470-A	NR	5E-14		0.0224589	[0.017-0.028] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_mcf_hap5	2615890	2615890	rs139175860	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	6p21.33		rs139175860-TC	0.201723	2E-12		0.0316515	[0.023-0.04] unit increase	Illumina [13476299] (imputed)	N
604	chr6_mcf_hap5	2616040	2616041	rs2853953	25802187	Jiang DK	2015-04-28	Hepatology	Genetic variants in five novel loci including CFB and CD40 predispose to chronic hepatitis B.	Chronic hepatitis B infection	2,514 Chinese ancestry cases, 1,130 Chinese ancestry controls	6,600 Chinese ancestry cases, 8,127 Chinese ancestry controls	6p21.33	HLA-C	rs2853953-A	0.9	5E-20		1.47	[1.35-1.59]	Illumina [3680900] (imputed)	N
604	chr6_mcf_hap5	2616281	2616282	rs9264579	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	6p21.33		rs9264579-A	0.344224	5E-18		0.0325012	[0.025-0.04] unit increase	Illumina [13476266] (imputed)	N
604	chr6_mcf_hap5	2616650	2616651	rs2853951	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-C	rs2853951-C	NR	3E-19		0.0279053	[0.022-0.034] unit increase	Affymetrix [323123] (imputed)	N
604	chr6_mcf_hap5	2616710	2616711	rs2853950	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs2853950-T	NR	1E-10		0.0182212	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_mcf_hap5	2616710	2616711	rs2853950	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-C	rs2853950-T	NR	4E-10		0.0177105	[0.012-0.023] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_mcf_hap5	2616710	2616711	rs2853950	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HLA-C	rs2853950-T	NR	2E-9		0.0171726	[0.012-0.023] unit increase	Affymetrix [321169] (imputed)	N
604	chr6_mcf_hap5	2616945	2616946	rs34131062	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	6p21.33	MICB	rs34131062-?	NR	3E-10	(S_VLDL_TG)	0.07202289	NR unit increase	Illumina [609262]	N
604	chr6_mcf_hap5	2616945	2616946	rs34131062	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	6p21.33	MICB	rs34131062-?	NR	1E-9	(VLDL_TG)	0.071520545	NR unit increase	Illumina [609262]	N
604	chr6_mcf_hap5	2616945	2616946	rs34131062	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	6p21.33	MICB	rs34131062-?	NR	8E-9	(S_VLDL_TG)	0.07218766	NR unit increase	Illumina [609262]	N
604	chr6_mcf_hap5	2616945	2616946	rs34131062	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	6p21.33	MICB	rs34131062-?	NR	1E-8	(VLDL_TG)	0.0707539	NR unit increase	Illumina [609262]	N
604	chr6_mcf_hap5	2617003	2617004	rs2524096	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TXNDC15	5,352 Icelandic ancestry individuals	NA	6p21.33		rs2524096-T	0.3782	1E-49		0.267181	[0.23-0.3] unit decrease	Illumina [7506463] (imputed)	N
604	chr6_mcf_hap5	2617103	2617104	rs1049281	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI in non-smokers	75,379 European ancestry women, 45,811 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	6p21.33	HLA-C	rs1049281-C	0.653	2E-8		0.027	[0.017-0.037] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
604	chr6_mcf_hap5	2617103	2617104	rs1049281	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (joint analysis main effects and smoking interaction)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	6p21.33	HLA-C	rs1049281-C	0.652	2E-10				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
604	chr6_mcf_hap5	2617103	2617104	rs1049281	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	6p21.33	HLA-C	rs1049281-C	0.652	1E-18		0.026	[0.02-0.032] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
604	chr6_mcf_hap5	2617221	2617222	rs3207561	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.33		rs3207561-A	0.623	4E-27				Affymetrix [10369434] (imputed)	N
604	chr6_mcf_hap5	2617223	2617224	rs3207555	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	6p21.33	HLA-C	rs3207555-A	0.34675	4E-12		0.017413307	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
604	chr6_mcf_hap5	2617596	2617597	rs2894204	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	6p21.33	NA	rs2894204-T	0.6383	8E-25		0.0209	[0.017-0.025] unit increase	NR [~ 27400000] (imputed)	N
604	chr6_mcf_hap5	2617596	2617597	rs2894204	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	6p21.33	NR	rs2894204-T	0.6383	8E-25		0.0209	[0.017-0.025] unit increase	NR [~ 27400000] (imputed)	N
604	chr6_mcf_hap5	2618237	2618238	rs17886880	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs17886880-A	NR	1E-10		0.0204376	[0.014-0.027] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_mcf_hap5	2618237	2618238	rs17886880	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-C	rs17886880-A	NR	1E-9		0.0194517	[0.013-0.026] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_mcf_hap5	2618237	2618238	rs17886880	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs17886880-A	NR	2E-11		0.0214244	[0.015-0.028] unit decrease	Affymetrix [321016] (imputed)	N
604	chr6_mcf_hap5	2618310	2618311	rs1050118	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	121,047 East Asian ancestry individuals	NA	6p21.33	NR	rs1050118-C	0.759821	5E-17		0.039726	[0.03-0.049] SD units decrease	Affymetrix, Illumina [16286195] (imputed)	N
604	chr6_mcf_hap5	2618392	2618393	rs34794906	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-C	rs34794906-C	NR	7E-15		0.027207	[0.02-0.034] unit decrease	Affymetrix [323123] (imputed)	N
604	chr6_mcf_hap5	2618392	2618393	rs34794906	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	6p21.33	HLA-C	rs34794906-C	0.2643	2E-23		0.04089973	[0.033-0.049] unit increase	Affymetrix [~ 2500000] (imputed)	N
604	chr6_mcf_hap5	2618849	2618850	rs9264638	23417110	Tin A	2013-02-16	Hum Genet	Genome-wide association study identified the human leukocyte antigen region as a novel locus for plasma beta-2 microglobulin.	Beta-2 microglubulin plasma levels	6,728 European ancestry individuals		6p21.33	HLA-C	rs9264638-A	0.58	2E-23		0.04	[0.032-0.048] unit decrease	Affymetrix [2500000] (imputed)	N
604	chr6_mcf_hap5	2618853	2618854	rs9264639	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	6p21.33	HLA-C	rs9264639-C	0.8898	2E-8		5.601	NR z score decrease	Illumina [26237160] (imputed)	N
604	chr6_mcf_hap5	2619021	2619022	rs9264642	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-C	rs9264642-T	NR	7E-14		0.0238148	[0.018-0.03] unit decrease	Affymetrix [323858] (imputed)	N
604	chr6_mcf_hap5	2619021	2619022	rs9264642	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HLA-C	rs9264642-T	NR	4E-12		0.0220978	[0.016-0.028] unit decrease	Affymetrix [127266] (imputed)	N
604	chr6_mcf_hap5	2619580	2619581	rs1065406	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	6p21.33	HLA-C	rs1065406-T	0.026891	1E-10		0.048755113	[0.034-0.064] unit increase	Affymetrix [93095623] (imputed)	N
604	chr6_mcf_hap5	2619588	2619589	rs2308575	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	6p21.33		rs2308575-T	NR	1E-224		0.0839	[0.079-0.089] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
604	chr6_mcf_hap5	2619588	2619589	rs2308575	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	White blood cell count	8,825 African American individuals, 18,251 Hispanic/Latino individuals, 543 Asian ancestry individuals, 606 Native American ancestry individuals, 383 individuals	NA	6p21.33	NR	rs2308575-?	NR	9E-7		0.01349677	[0.0081-0.0189] unit increase	Illumina [30613845] (imputed)	N
604	chr6_mcf_hap5	2619758	2619759	rs9264664	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Adrenomedullin levels	21,758 European ancestry individuals	9,173 individuals	6p21.33		rs9264664-T	0.67	2E-12		0.0668	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
604	chr6_mcf_hap5	2619822	2619823	rs9264666	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs9264666-G	NR	6E-11		0.0183937	[0.013-0.024] unit increase	Affymetrix [321016] (imputed)	N
604	chr6_mcf_hap5	2619956	2619957	rs41543814	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-C	rs41543814-T	NR	7E-11		0.0205232	[0.014-0.027] unit increase	Affymetrix [323858] (imputed)	N
604	chr6_mcf_hap5	2619956	2619957	rs41543814	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HLA-C	rs41543814-T	NR	7E-10		0.0194382	[0.013-0.026] unit increase	Affymetrix [127266] (imputed)	N
604	chr6_mcf_hap5	2619975	2619976	rs28626310	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs28626310-G	NR	4E-12		0.0245555	[0.018-0.031] unit decrease	Affymetrix [319769] (imputed)	N
604	chr6_mcf_hap5	2619975	2619976	rs28626310	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-C	rs28626310-G	NR	3E-11		0.0236059	[0.017-0.031] unit decrease	Affymetrix [319769] (imputed)	N
604	chr6_mcf_hap5	2619975	2619976	rs28626310	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HLA-C	rs28626310-G	NR	3E-10		0.0226589	[0.016-0.03] unit decrease	Affymetrix [321169] (imputed)	N
604	chr6_mcf_hap5	2620032	2620033	rs1050414	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Psoriasis vulgaris	206 East Asian ancestry cases, 172,289 East Asian ancestry controls	NA	6p21.33		rs1050414-G	0.029861158	6E-14		3.1940312	[2.36-4.03] unit increase	Illumina [13429050] (imputed)	N
604	chr6_mcf_hap5	2620044	2620045	rs1050420	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs1050420-T	NR	1E-11		0.0196904	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_mcf_hap5	2620044	2620045	rs1050420	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-C	rs1050420-T	NR	1E-10		0.0188138	[0.013-0.025] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_mcf_hap5	2620044	2620045	rs1050420	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs1050420-T	NR	2E-8		0.016265	[0.011-0.022] unit decrease	Affymetrix [321016] (imputed)	N
604	chr6_mcf_hap5	2620044	2620045	rs1050420	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8 on CD8+ T cell	3,113 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs1050420-T	0.57866	2E-15		0.2317	[0.18-0.29] unit increase	Illumina [18030777] (imputed)	N
604	chr6_mcf_hap5	2620044	2620045	rs1050420	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	6p21.33	HLA-C	rs1050420-T	0.371904	2E-15		0.020388147	[0.015-0.025] unit increase	Affymetrix [93095623] (imputed)	N
604	chr6_mcf_hap5	2620103	2620104	rs707911	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-C	rs707911-A	NR	1E-10		0.0201335	[0.014-0.026] unit decrease	Affymetrix [323858] (imputed)	N
604	chr6_mcf_hap5	2620103	2620104	rs707911	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HLA-C	rs707911-A	NR	2E-9		0.0186456	[0.013-0.025] unit decrease	Affymetrix [127266] (imputed)	N
604	chr6_mcf_hap5	2620103	2620104	rs707911	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-C	rs707911-A	NR	4E-19		0.027395	[0.021-0.033] unit increase	Affymetrix [323123] (imputed)	N
604	chr6_mcf_hap5	2620111	2620112	rs1050437	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gastric cancer	7,921 East Asian ancestry cases, 159,201 East Asian ancestry controls	NA	6p21.33		rs1050437-T	0.367701676	2E-10		0.1113395	[0.077-0.145] unit decrease	Illumina [13428249] (imputed)	N
604	chr6_mcf_hap5	2620347	2620348	rs2308527	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-C	rs2308527-G	NR	1E-10		0.0203077	[0.014-0.027] unit decrease	Affymetrix [323858] (imputed)	N
604	chr6_mcf_hap5	2620347	2620348	rs2308527	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HLA-C	rs2308527-G	NR	5E-9		0.0185054	[0.012-0.025] unit decrease	Affymetrix [127266] (imputed)	N
604	chr6_mcf_hap5	2620570	2620571	rs2524094	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GZMA	5,361 Icelandic ancestry individuals	NA	6p21.33		rs2524094-C	0.3792	4E-35		0.236005	[0.2-0.27] unit decrease	Illumina [7506463] (imputed)	N
604	chr6_mcf_hap5	2620570	2620571	rs2524094	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-C	rs2524094-C	NR	6E-17		0.0258625	[0.02-0.032] unit increase	Affymetrix [323123] (imputed)	N
604	chr6_mcf_hap5	2620589	2620590	rs2844622	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs2844622-A	NR	4E-23		0.0292963	[0.024-0.035] unit increase	Affymetrix [321016] (imputed)	N
604	chr6_mcf_hap5	2620952	2620953	rs2074488	23144326	Kim DK	2012-11-09	Am J Respir Crit Care Med	Genome-wide association analysis of blood biomarkers in chronic obstructive pulmonary disease.	Chronic obstructive pulmonary disease-related biomarkers	Up to 1,951 European ancestry smokers	NA	6p21.33	HLA-C	rs2074488-T	0.13	2E-10	(SP-D)			Illumina [588352]	N
604	chr6_mcf_hap5	2621000	2621001	rs9357121	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.33		rs9357121-T	0.966	9E-15				Affymetrix [10369434] (imputed)	N
604	chr6_mcf_hap5	2621000	2621001	rs9357121	26582766	Lu X	2015-11-18	Circ Cardiovasc Genet	Genetic Susceptibility to Lipid Levels and Lipid Change Over Time and Risk of Incident Hyperlipidemia in Chinese Populations.	LDL cholesterol	8,344 Han Chinese ancestry individuals	14,739 Han Chinese ancestry individuals	6p21.33	HLA-C	rs9357121-T	0.85	3E-10		1.842	[1.25-2.43] unit increase	Affymetrix, Illumina [2573667] (imputed)	N
604	chr6_mcf_hap5	2621000	2621001	rs9357121	26582766	Lu X	2015-11-18	Circ Cardiovasc Genet	Genetic Susceptibility to Lipid Levels and Lipid Change Over Time and Risk of Incident Hyperlipidemia in Chinese Populations.	Cholesterol, total	8,344 Han Chinese ancestry individuals	14,739 Han Chinese ancestry individuals	6p21.33	HLA-C	rs9357121-T	0.85	2E-10		2.062	[1.42-2.71] unit increase	Affymetrix, Illumina [2573667] (imputed)	N
604	chr6_mcf_hap5	2621156	2621157	rs4361609	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	6p21.33	HLA-C, USP8P1	rs4361609-C	0.120687	1E-47		0.05005804	[0.043-0.057] unit decrease	Affymetrix [93095623] (imputed)	N
604	chr6_mcf_hap5	2621233	2621234	rs2249741	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs2249741-A	NR	1E-14		0.0216601	[0.016-0.027] unit decrease	Affymetrix [319769] (imputed)	N
604	chr6_mcf_hap5	2621233	2621234	rs2249741	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-C	rs2249741-A	NR	3E-13		0.0205289	[0.015-0.026] unit decrease	Affymetrix [319769] (imputed)	N
604	chr6_mcf_hap5	2621233	2621234	rs2249741	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs2249741-A	NR	1E-11		0.0190915	[0.014-0.025] unit increase	Affymetrix [321016] (imputed)	N
604	chr6_mcf_hap5	2621233	2621234	rs2249741	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HLA-C	rs2249741-A	NR	4E-13		0.0206435	[0.015-0.026] unit decrease	Affymetrix [321169] (imputed)	N
604	chr6_mcf_hap5	2621242	2621243	rs2249742	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large LDL	115,082 European ancestry individuals	NA	6p21.33		rs2249742-C	0.555622	3E-9		0.0244495	[0.016-0.033] unit decrease	NR [11722792] (imputed)	N
604	chr6_mcf_hap5	2621242	2621243	rs2249742	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in LDL	115,082 European ancestry individuals	NA	6p21.33		rs2249742-C	0.555622	2E-9		0.0247133	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
604	chr6_mcf_hap5	2621242	2621243	rs2249742	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large LDL	115,082 European ancestry individuals	NA	6p21.33		rs2249742-C	0.555622	2E-8		0.0230779	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
604	chr6_mcf_hap5	2621242	2621243	rs2249742	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in LDL	115,082 European ancestry individuals	NA	6p21.33		rs2249742-C	0.555622	2E-8		0.0234686	[0.015-0.032] unit decrease	NR [11722792] (imputed)	N
604	chr6_mcf_hap5	2621242	2621243	rs2249742	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	LDL cholesterol levels	115,082 European ancestry individuals	NA	6p21.33		rs2249742-C	0.555622	3E-9		0.0245814	[0.016-0.033] unit decrease	NR [11722792] (imputed)	N
604	chr6_mcf_hap5	2621242	2621243	rs2249742	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large LDL	115,082 European ancestry individuals	NA	6p21.33		rs2249742-C	0.555622	8E-10		0.025273	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
604	chr6_mcf_hap5	2621242	2621243	rs2249742	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large LDL	115,082 European ancestry individuals	NA	6p21.33		rs2249742-C	0.555622	4E-9		0.0242248	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
604	chr6_mcf_hap5	2621242	2621243	rs2249742	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs2249742-C	0.559	5E-180				Affymetrix [10369434] (imputed)	N
604	chr6_mcf_hap5	2621242	2621243	rs2249742	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p21.33	HLA-C, USP8P1	rs2249742-T	0.441322	3E-27		0.03629834	[0.03-0.043] unit increase	Affymetrix [93095623] (imputed)	N
604	chr6_mcf_hap5	2621242	2621243	rs2249742	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	6p21.33	HLA-C, USP8P1	rs2249742-T	0.441347	6E-25		0.026632145	[0.022-0.032] unit increase	Affymetrix [93095623] (imputed)	N
604	chr6_mcf_hap5	2621242	2621243	rs2249742	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.33	HLA-C, USP8P1	rs2249742-T	0.441398	2E-70		0.049990416	[0.044-0.056] unit increase	Affymetrix [93095623] (imputed)	N
604	chr6_mcf_hap5	2621242	2621243	rs2249742	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	6p21.33	NR	rs2249742-T	0.448909	4E-405		0.079592	[0.076-0.083] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
604	chr6_mcf_hap5	2621242	2621243	rs2249742	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p21.33	NR	rs2249742-T	0.465758	6E-421				Affymetrix, Illumina [23472807] (imputed)	N
604	chr6_mcf_hap5	2621242	2621243	rs2249742	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	White blood cell count	8,825 African American individuals, 18,251 Hispanic/Latino individuals, 543 Asian ancestry individuals, 606 Native American ancestry individuals, 383 individuals	NA	6p21.33	NR	rs2249742-?	NR	2E-7		0.01238585	[0.0077-0.0171] unit increase	Illumina [30613845] (imputed)	N
604	chr6_mcf_hap5	2621242	2621243	rs2249742	28158719	Jain D	2017-02-01	Hum Mol Genet	Genome-wide association of white blood cell counts in Hispanic/Latino Americans: the Hispanic Community Health Study/Study of Latinos.	White blood cell count (lymphocyte)	up to 11,809 Hispanic/Latino American individuals	up to 7,200 Hispanic/Latino American individuals	6p21.33	HLA-C	rs2249742-C	0.486	4E-8		0.0219	[0.014-0.03] unit decrease	Illumina [27887661] (imputed)	N
604	chr6_mcf_hap5	2621242	2621243	rs2249742	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	6p21.33	HLA-C, USP8P1	rs2249742-T	0.4405	5E-71		0.06448932	[0.057-0.072] unit increase	Affymetrix [~ 2500000] (imputed)	N
604	chr6_mcf_hap5	2621393	2621394	rs9264681	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs9264681-C	NR	1E-13		0.0225581	[0.017-0.029] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_mcf_hap5	2621393	2621394	rs9264681	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-C	rs9264681-C	NR	3E-13		0.0223033	[0.016-0.028] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_mcf_hap5	2621393	2621394	rs9264681	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-C	rs9264681-C	NR	2E-11		0.0221737	[0.016-0.029] unit decrease	Affymetrix [323123] (imputed)	N
604	chr6_mcf_hap5	2621393	2621394	rs9264681	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HLA-C	rs9264681-C	NR	4E-10		0.0192801	[0.013-0.025] unit increase	Affymetrix [321169] (imputed)	N
605	chr6_mcf_hap5	2621553	2621554	rs5010528	28062682	Carr DF	2017-01-05	J Antimicrob Chemother	Genome-wide association study of nevirapine hypersensitivity in a sub-Saharan African HIV-infected population.	Nevirapine-induced hypersensitivity in HIV (Stevens-Johnson syndrome or toxic epidermal necrosis)	51 Sub-saharan African ancestry cases, 182 Sub-saharan African ancestry controls	11 Sub-Saharan African ancestry cases, 27 African ancestry cases, 60 Sub-Saharan African ancestry controls, 8 African ancestry controls	6p21.33	HLA-C	rs5010528-G	0.14	8E-8		4.84	[2.71-8.61]	Illumina [14218511] (imputed)	N
605	chr6_mcf_hap5	2621613	2621614	rs2523599	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs2523599-C	NR	1E-21		0.0275701	[0.022-0.033] unit decrease	Affymetrix [319769] (imputed)	N
605	chr6_mcf_hap5	2621613	2621614	rs2523599	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-C	rs2523599-C	NR	7E-20		0.0263436	[0.021-0.032] unit decrease	Affymetrix [319769] (imputed)	N
605	chr6_mcf_hap5	2621613	2621614	rs2523599	33608531	Wu Y	2021-02-19	Nat Commun	GWAS of peptic ulcer disease implicates Helicobacter pylori infection, other gastrointestinal disorders and depression.	Irritable bowel syndrome	28,518 European ancestry cases, 426,803 European ancestry controls	NA	6p21.33	HLA-C	rs2523599-C	0.39	4E-8		0.95		NR [8546065] (imputed)	N
605	chr6_mcf_hap5	2621630	2621631	rs13191343	20953186	Huffmeier U	2010-10-17	Nat Genet	Common variants at TRAF3IP2 are associated with susceptibility to psoriatic arthritis and psoriasis.	Psoriatic arthritis	572 European ancestry cases, 888 European ancestry controls	Up to 1,761 European ancestry cases, 3,727 European ancestry controls	6p21.33	HLA-C	rs13191343-T	0.13	2E-72		2.37	[2.16-2.61]	Affymetrix [1585307] (imputed)	N
605	chr6_mcf_hap5	2621703	2621704	rs6900444	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs6900444-T	NR	4E-11		0.0186301	[0.013-0.024] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_mcf_hap5	2621703	2621704	rs6900444	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-C	rs6900444-T	NR	2E-15		0.0243915	[0.018-0.03] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_mcf_hap5	2621703	2621704	rs6900444	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	6p21.33	RNU6-283P	rs6900444-?	NR	1E-38		0.0342	[0.029-0.039] unit increase	Affymetrix [5701386] (imputed)	N
605	chr6_mcf_hap5	2621791	2621792	rs6900323	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs6900323-G	NR	3E-10		0.022084	[0.015-0.029] unit decrease	Affymetrix [319769] (imputed)	N
605	chr6_mcf_hap5	2621791	2621792	rs6900323	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-C	rs6900323-G	NR	2E-9		0.0211782	[0.014-0.028] unit decrease	Affymetrix [319769] (imputed)	N
605	chr6_mcf_hap5	2621791	2621792	rs6900323	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-C	rs6900323-G	NR	2E-8		0.0215495	[0.014-0.029] unit increase	Affymetrix [323123] (imputed)	N
605	chr6_mcf_hap5	2622160	2622161	rs2524084	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	151,807 East Asian ancestry individuals	NA	6p21.33	NR	rs2524084-A	0.427051	1E-53		0.056526	[0.049-0.064] SD units increase	Affymetrix, Illumina [16710636] (imputed)	N
605	chr6_mcf_hap5	2622160	2622161	rs2524084	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	88,929 East Asian ancestry individuals	NA	6p21.33	NR	rs2524084-A	0.42316	2E-35		0.059309	[0.05-0.069] SD units increase	Affymetrix, Illumina [16289044] (imputed)	N
605	chr6_mcf_hap5	2622160	2622161	rs2524084	31375628	Tengvall K	2019-08-02	Proc Natl Acad Sci U S A	Molecular mimicry between Anoctamin 2 and Epstein-Barr virus nuclear antigen 1 associates with multiple sclerosis risk.	Anti-anoctamin 2 antibody levels	11,936 European ancestry individuals	NA	6p21.33	NR	rs2524084-G	NR	3E-6		0.048	[0.024-0.072] unit decrease	Illumina [615763]	N
605	chr6_mcf_hap5	2622282	2622283	rs2524082	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	6p21.33	HLA-C, USP8P1	rs2524082-T	0.56	4E-65		0.06130488	[0.054-0.068] unit decrease	Affymetrix [~ 2500000] (imputed)	N
605	chr6_mcf_hap5	2622594	2622595	rs7764413	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	USP8P1	rs7764413-C	NR	8E-11		0.0182807	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_mcf_hap5	2622594	2622595	rs7764413	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	USP8P1	rs7764413-C	NR	1E-9		0.0172073	[0.012-0.023] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_mcf_hap5	2622594	2622595	rs7764413	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p21.33	NR	rs7764413-C	0.463	2E-6	(IFNalpha_STAT1_of_CD8p_T)			Illumina [5084123] (imputed)	N
605	chr6_mcf_hap5	2622595	2622596	rs2524081	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p21.33	HLA-C	rs2524081-C		2E-19		0.03	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
605	chr6_mcf_hap5	2622595	2622596	rs2524081	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	6p21.33	HLA-C, USP8P1	rs2524081-C	0.1374	5E-11		0.03378154	[0.024-0.044] unit decrease	Affymetrix [~ 2500000] (imputed)	N
605	chr6_mcf_hap5	2622663	2622664	rs2844620	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	USP8P1	rs2844620-C	NR	4E-19		0.0254568	[0.02-0.031] unit decrease	Affymetrix [319769] (imputed)	N
605	chr6_mcf_hap5	2622663	2622664	rs2844620	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	USP8P1	rs2844620-C	NR	4E-11		0.0208679	[0.015-0.027] unit decrease	Affymetrix [323858] (imputed)	N
605	chr6_mcf_hap5	2622663	2622664	rs2844620	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	USP8P1	rs2844620-C	NR	3E-18		0.0247749	[0.019-0.03] unit decrease	Affymetrix [319769] (imputed)	N
605	chr6_mcf_hap5	2622663	2622664	rs2844620	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	USP8P1	rs2844620-C	NR	5E-10		0.0196514	[0.013-0.026] unit decrease	Affymetrix [127266] (imputed)	N
605	chr6_mcf_hap5	2622663	2622664	rs2844620	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	USP8P1	rs2844620-C	NR	9E-17		0.0239546	[0.018-0.03] unit decrease	Affymetrix [321169] (imputed)	N
605	chr6_mcf_hap5	2622686	2622687	rs2524079	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	6p21.33		rs2524079-A	NR	9E-270		0.0717	[0.068-0.076] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
605	chr6_mcf_hap5	2622686	2622687	rs2524079	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	82,810 East Asian ancestry individuals	NA	6p21.33		rs2524079-A	0.271529	6E-32		0.0612891	[0.051-0.072] unit increase	Illumina [13467171] (imputed)	N
605	chr6_mcf_hap5	2622686	2622687	rs2524079	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	6p21.33		rs2524079-A	NR	3E-162		0.0594	[0.055-0.064] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
605	chr6_mcf_hap5	2622686	2622687	rs2524079	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.33		rs2524079-G	0.583	4E-109				Affymetrix [10369434] (imputed)	N
605	chr6_mcf_hap5	2622686	2622687	rs2524079	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p21.33		rs2524079-G	0.583	2E-76				Affymetrix [10369434] (imputed)	N
605	chr6_mcf_hap5	2622686	2622687	rs2524079	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (lymphocyte)	21,347 Hispanic or Latin American individuals	NA	6p21.33		rs2524079-A	0.5566	1E-8		0.0648	[0.042-0.087] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
605	chr6_mcf_hap5	2622686	2622687	rs2524079	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	21,347 Hispanic or Latin American individuals	NA	6p21.33		rs2524079-A	0.5537	3E-10		0.0627	[0.043-0.082] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
605	chr6_mcf_hap5	2622686	2622687	rs2524079	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	USP8P1	rs2524079-A	NR	6E-11		0.0186395	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_mcf_hap5	2622686	2622687	rs2524079	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	USP8P1	rs2524079-A	NR	4E-10		0.0178594	[0.012-0.023] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_mcf_hap5	2622686	2622687	rs2524079	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	USP8P1	rs2524079-A	NR	7E-9		0.0164819	[0.011-0.022] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_mcf_hap5	2622686	2622687	rs2524079	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	USP8P1	rs2524079-A	NR	1E-9		0.0175752	[0.012-0.023] unit increase	Affymetrix [321169] (imputed)	N
605	chr6_mcf_hap5	2622686	2622687	rs2524079	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	6p21.33	HLA-C, USP8P1	rs2524079-A	0.417269	1E-31		0.027049404	[0.023-0.032] unit increase	Affymetrix [93095623] (imputed)	N
605	chr6_mcf_hap5	2622686	2622687	rs2524079	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p21.33	NR	rs2524079-A	0.398304	1E-51				Affymetrix, Illumina [19905671] (imputed)	N
605	chr6_mcf_hap5	2622686	2622687	rs2524079	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	6p21.33	NR	rs2524079-A	0.419059	5E-51		0.031209	[0.027-0.035] SD unit increase	Affymetrix, Illumina [50036608] (imputed)	N
605	chr6_mcf_hap5	2622686	2622687	rs2524079	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	White blood cell count	8,825 African American individuals, 18,251 Hispanic/Latino individuals, 543 Asian ancestry individuals, 606 Native American ancestry individuals, 383 individuals	NA	6p21.33	NR	rs2524079-?	NR	1E-9		0.01475699	[0.01-0.019] unit increase	Illumina [30613845] (imputed)	N
605	chr6_mcf_hap5	2622686	2622687	rs2524079	28158719	Jain D	2017-02-01	Hum Mol Genet	Genome-wide association of white blood cell counts in Hispanic/Latino Americans: the Hispanic Community Health Study/Study of Latinos.	White blood cell count (lymphocyte)	up to 11,809 Hispanic/Latino American individuals	up to 7,200 Hispanic/Latino American individuals	6p21.33	NR	rs2524079-A	0.56	2E-8		0.016	[0.01-0.022] unit increase	Illumina [27887661] (imputed)	N
605	chr6_mcf_hap5	2622686	2622687	rs2524079	28158719	Jain D	2017-02-01	Hum Mol Genet	Genome-wide association of white blood cell counts in Hispanic/Latino Americans: the Hispanic Community Health Study/Study of Latinos.	White blood cell count	up to 11,809 Hispanic/Latino American individuals	up to 7,200 Hispanic/Latino American individuals	6p21.33	HLA-C	rs2524079-G	0.556	2E-8		0.213	[0.21-0.22] unit decrease	Illumina [27887661] (imputed)	N
605	chr6_mcf_hap5	2622686	2622687	rs2524079	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	6p21.33	HLA-C, USP8P1	rs2524079-A	0.4171	2E-126		0.08687249	[0.08-0.094] unit increase	Affymetrix [~ 2500000] (imputed)	N
605	chr6_mcf_hap5	2622686	2622687	rs2524079	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	6p21.33	HLA-C, USP8P1	rs2524079-A	0.4168	6E-68		0.06325533	[0.056-0.07] unit increase	Affymetrix [~ 2500000] (imputed)	N
605	chr6_mcf_hap5	2622686	2622687	rs2524079	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	6p21.33	HLA-C, USP8P1	rs2524079-A	0.4168	2E-68		0.06352314	[0.056-0.071] unit increase	Affymetrix [~ 2500000] (imputed)	N
605	chr6_mcf_hap5	2622686	2622687	rs2524079	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	6p21.33	HLA-C, USP8P1	rs2524079-A	0.4168	1E-67		0.0630379	[0.056-0.07] unit increase	Affymetrix [~ 2500000] (imputed)	N
605	chr6_mcf_hap5	2622686	2622687	rs2524079	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	6p21.33	HLA-C, USP8P1	rs2524079-A	0.4168	9E-69		0.06375719	[0.057-0.071] unit increase	Affymetrix [~ 2500000] (imputed)	N
605	chr6_mcf_hap5	2622686	2622687	rs2524079	21738480	Nalls MA	2011-07-01	PLoS Genet	Multiple loci are associated with white blood cell phenotypes.	White blood cell count	19,509 European ancestry individuals	11,823 European ancestry individuals	6p21.33	PSORS1C3, HCG27, HLA-C, HLA-B	rs2524079-A		1E-11	(Lymphocytes)	0.0148	[0.010-0.019] unit increase	Affymetrix, Illumina [> 2400000] (imputed)	N
605	chr6_mcf_hap5	2622703	2622704	rs12111032	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p21.33	HLA-C, HLA-B	rs12111032-G	0.24	1E-9	(EA)	2.32	[1.76-3.06]	Illumina [up to 547389]	N
605	chr6_mcf_hap5	2622735	2622736	rs2844619	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	USP8P1	rs2844619-C	NR	4E-24		0.0293712	[0.024-0.035] unit decrease	Affymetrix [319769] (imputed)	N
605	chr6_mcf_hap5	2622735	2622736	rs2844619	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	USP8P1	rs2844619-C	NR	8E-22		0.0278547	[0.022-0.034] unit decrease	Affymetrix [319769] (imputed)	N
605	chr6_mcf_hap5	2622735	2622736	rs2844619	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	USP8P1	rs2844619-C	NR	7E-20		0.0267656	[0.021-0.033] unit decrease	Affymetrix [321169] (imputed)	N
605	chr6_mcf_hap5	2623021	2623022	rs35989257	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	USP8P1	rs35989257-T	NR	6E-9		0.0198497	[0.013-0.027] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_mcf_hap5	2623021	2623022	rs35989257	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	USP8P1	rs35989257-T	NR	3E-9		0.0189318	[0.013-0.025] unit increase	Affymetrix [321169] (imputed)	N
605	chr6_mcf_hap5	2623151	2623152	rs2844616	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	USP8P1	rs2844616-C	NR	5E-17		0.0240156	[0.018-0.03] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_mcf_hap5	2623151	2623152	rs2844616	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	USP8P1	rs2844616-C	NR	3E-16		0.0233918	[0.018-0.029] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_mcf_hap5	2623151	2623152	rs2844616	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	6p21.33	USP8P1	rs2844616-C	NR	2E-9		0.0194652	[0.013-0.026] unit decrease	Affymetrix [323858] (imputed)	N
605	chr6_mcf_hap5	2623151	2623152	rs2844616	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	USP8P1	rs2844616-C	NR	7E-18		0.0267883	[0.021-0.033] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_mcf_hap5	2623243	2623244	rs12199223	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CD8A	5,365 Icelandic ancestry individuals	NA	6p21.33		rs12199223-A	0.08655	2E-61		0.542037	[0.48-0.61] unit increase	Illumina [7506463] (imputed)	N
605	chr6_mcf_hap5	2623243	2623244	rs12199223	30921485	Bejaoui Y	2019-03-28	Exp Dermatol	Genome-wide association study of psoriasis in an Egyptian population.	Psoriasis	215 Egyptian ancestry cases, 416 Egyptian ancestry controls	321 Egyptian ancestry cases, 253 Egyptian ancestry controls	6p21.33	HLA-C	rs12199223-?	NR	7E-18		2.49	[2.01-3.1]	Illumina [312245]	N
605	chr6_mcf_hap5	2623274	2623275	rs3134745	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	6p21.33	HLA-C, USP8P1	rs3134745-T	0.325625	5E-10		0.01714023	[0.012-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
605	chr6_mcf_hap5	2623859	2623860	rs9461680	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6p21.33		rs9461680-C	0.825202	3E-9		0.0310951	[0.021-0.041] unit increase	NR [11722792] (imputed)	N
605	chr6_mcf_hap5	2623859	2623860	rs9461680	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	6p21.33		rs9461680-C	0.825202	9E-11		0.032856	[0.023-0.043] unit increase	NR [11722792] (imputed)	N
605	chr6_mcf_hap5	2623871	2623872	rs9468911	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6p21.33		rs9468911-G	0.825215	1E-11		0.0349605	[0.025-0.045] unit decrease	NR [11722792] (imputed)	N
605	chr6_mcf_hap5	2623871	2623872	rs9468911	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6p21.33		rs9468911-G	0.825215	8E-12		0.0354702	[0.025-0.046] unit increase	NR [11722792] (imputed)	N
605	chr6_mcf_hap5	2624090	2624091	rs73390981	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	6p21.33		rs73390981-G	0.922	1E-33				Affymetrix [10369434] (imputed)	N
605	chr6_mcf_hap5	2624090	2624091	rs73390981	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	6p21.33	USP8P1	rs73390981-A	0.078064	3E-29		0.049712982	[0.041-0.058] unit increase	Affymetrix [93095623] (imputed)	N
605	chr6_mcf_hap5	2624127	2624128	rs13200569	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	6p21.33	USP8P1	rs13200569-A	0.285539	7E-13		0.01938597	[0.014-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
605	chr6_mcf_hap5	2624341	2624342	rs4141168	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	6p21.33		rs4141168-A	0.786459	2E-8		0.0267074	[0.017-0.036] unit increase	NR [11722792] (imputed)	N
605	chr6_mcf_hap5	2624396	2624397	rs3130696	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	6p21.33	MICB	rs3130696-?	NR	5E-10	(XS_VLDL_TG)	0.06374044	NR unit decrease	Illumina [609262]	N
605	chr6_mcf_hap5	2624396	2624397	rs3130696	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	6p21.33	MICB	rs3130696-?	NR	3E-6	(XS_VLDL_TG)	0.059096735	NR unit decrease	Illumina [609262]	N
605	chr6_mcf_hap5	2624407	2624408	rs3094680	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	6p21.33	HLA	rs3094680-T	0.601913	1E-8		1.05	[1.03-1.06]	NR [8126035] (imputed)	N
605	chr6_mcf_hap5	2625302	2625303	rs2524069	27327535	Laville V	2016-06-21	Pigment Cell Melanoma Res	A genome-wide association study in Caucasian women suggests the involvement of HLA genes in the severity of facial solar lentigines.	Severity of facial solar lentigines	502 French ancestry individuals		6p21.33	USP8P1, HLA-C	rs2524069-T	0.13	3E-7				Illumina [795063]	N
605	chr6_mcf_hap5	2625473	2625474	rs6919908	26007630	Swaminathan B	2015-05-26	Nat Commun	Variants in ELL2 influencing immunoglobulin levels associate with multiple myeloma.	Multiple myeloma and monoclonal gammopathy	2,194 European ancestry multiple myeloma cases, 251 European ancestry monoclonal gammopathy cases, 294,390 European ancestry controls	586 European ancestry multiple myeloma cases, 2,111 European ancestry controls	6p21.33	PSORS1C2, HLA	rs6919908-T	0.23	6E-10		0.23	[NR] unit increase	Illumina [12100000] (imputed)	N
605	chr6_mcf_hap5	2625473	2625474	rs6919908	26007630	Swaminathan B	2015-05-26	Nat Commun	Variants in ELL2 influencing immunoglobulin levels associate with multiple myeloma.	Multiple myeloma	2,194 European ancestry cases, 222,555 European ancestry controls	586 European ancestry cases, 2,111 European ancestry controls	6p21.33	PSORS1C2, HLA	rs6919908-T	0.23	4E-10		0.25	[NR] unit increase	Illumina [12100000] (imputed)	N
605	chr6_mcf_hap5	2626323	2626324	rs2524067	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p21.33	HLA-C, HLA-B	rs2524067-G	0.353	1E-25				Illumina [118177]	N
605	chr6_mcf_hap5	2627325	2627326	rs7383388	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6p21.33	RPL3P2	rs7383388-T	0.404081	1E-10		0.01745803	[0.012-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
605	chr6_mcf_hap5	2627705	2627706	rs2853946	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	USP8P1	rs2853946-T	NR	2E-9		0.0200045	[0.014-0.026] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_mcf_hap5	2627705	2627706	rs2853946	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	USP8P1	rs2853946-T	NR	5E-11		0.0201772	[0.014-0.026] unit increase	Affymetrix [321169] (imputed)	N
605	chr6_mcf_hap5	2627705	2627706	rs2853946	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	119,629 East Asian ancestry individuals	NA	6p21.33	NR	rs2853946-A	0.728288	8E-12		0.03126	[0.022-0.04] SD units decrease	Affymetrix, Illumina [16286228] (imputed)	N
605	chr6_mcf_hap5	2627705	2627706	rs2853946	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	White blood cell count	8,825 African American individuals, 18,251 Hispanic/Latino individuals, 543 Asian ancestry individuals, 606 Native American ancestry individuals, 383 individuals	NA	6p21.33	NR	rs2853946-?	NR	8E-7		0.0119414	[0.0072-0.0167] unit increase	Illumina [30613845] (imputed)	N
605	chr6_mcf_hap5	2627705	2627706	rs2853946	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.33	USP8P1	rs2853946-A	0.6837	8E-12		0.0519	[0.037-0.067] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
605	chr6_mcf_hap5	2627705	2627706	rs2853946	25096241	Keller MF	2014-08-05	Hum Mol Genet	Trans-ethnic meta-analysis of white blood cell phenotypes.	White blood cell count	16,843 Japanese ancestry individuals, 19,509 European ancestry individuals, 16,388 African American individuals	NA	6p21.33	HLA-B	rs2853946-A	0.717	8E-6	(Japanese)	0.013	[0.0071-0.0189] unit decrease	Illumina [NR] (imputed)	N
605	chr6_mcf_hap5	2627705	2627706	rs2853946	25096241	Keller MF	2014-08-05	Hum Mol Genet	Trans-ethnic meta-analysis of white blood cell phenotypes.	White blood cell count	16,843 Japanese ancestry individuals, 19,509 European ancestry individuals, 16,388 African American individuals	NA	6p21.33	HLA-B	rs2853946-A	0.348	1E-8	(EA)	0.017	[0.011-0.023] unit decrease	Illumina [NR] (imputed)	N
605	chr6_mcf_hap5	2627705	2627706	rs2853946	25096241	Keller MF	2014-08-05	Hum Mol Genet	Trans-ethnic meta-analysis of white blood cell phenotypes.	White blood cell count	16,843 Japanese ancestry individuals, 19,509 European ancestry individuals, 16,388 African American individuals	NA	6p21.33	HLA-B	rs2853946-?	NR	3E-14		0.0139	[0.010-0.017] unit decrease	Illumina [NR] (imputed)	N
605	chr6_mcf_hap5	2627908	2627909	rs112262437	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.33	NR	rs112262437-C	0.994	2E-27	(conditional)	6.006	[5.68-6.33]	Illumina [11270530] (imputed)	N
605	chr6_mcf_hap5	2627916	2627917	rs2844608	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	RPL3P2	rs2844608-T	NR	3E-19		0.0260453	[0.02-0.032] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_mcf_hap5	2627916	2627917	rs2844608	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	RPL3P2	rs2844608-T	NR	2E-18		0.0254038	[0.02-0.031] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_mcf_hap5	2627916	2627917	rs2844608	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4 on CD28+ CD4+ T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs2844608-T	0.45698	9E-10		0.1884	[0.13-0.25] unit increase	Illumina [17954496] (imputed)	N
605	chr6_mcf_hap5	2628373	2628374	rs2853943	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	RPL3P2	rs2853943-C	NR	2E-12		0.0232178	[0.017-0.03] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_mcf_hap5	2628373	2628374	rs2853943	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	RPL3P2	rs2853943-C	NR	3E-12		0.0229712	[0.017-0.029] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_mcf_hap5	2628934	2628935	rs2844606	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	RPL3P2	rs2844606-G	NR	2E-9		0.0190067	[0.013-0.025] unit increase	Affymetrix [323858] (imputed)	N
605	chr6_mcf_hap5	2628934	2628935	rs2844606	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	RPL3P2	rs2844606-G	NR	5E-8		0.017266	[0.011-0.023] unit increase	Affymetrix [127266] (imputed)	N
605	chr6_mcf_hap5	2628934	2628935	rs2844606	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	RPL3P2	rs2844606-G	NR	1E-13		0.021298	[0.016-0.027] unit increase	Affymetrix [321169] (imputed)	N
605	chr6_mcf_hap5	2628934	2628935	rs2844606	33204752	Butler-Laporte G	2020-09-24	Open Forum Infect Dis	Genetic Determinants of Antibody-Mediated Immune Responses to Infectious Diseases Agents: A Genome-Wide and HLA Association Study.	Anti-human herpes virus 6 IE1A IgG seropositivity	8,735 White British ancestry individuals	NA	6p21.33	RPL3P2	rs2844606-A	0.584	1E-8		0.1	unit decrease	NR [25472218] (imputed)	N
605	chr6_mcf_hap5	2628934	2628935	rs2844606	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	6p21.33	RPL3P2	rs2844606-G	0.417187	3E-23		0.025892606	[0.021-0.031] unit increase	Affymetrix [93095623] (imputed)	N
605	chr6_mcf_hap5	2628936	2628937	rs9264758	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p21.33	HLA-C	rs9264758-G	0.866	3E-7		0.082	[0.051-0.113] unit increase	Affymetrix, Illumina [7374092] (imputed)	N
605	chr6_mcf_hap5	2629093	2629094	rs2844605	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	RPL3P2	rs2844605-C	NR	7E-16		0.0250208	[0.019-0.031] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_mcf_hap5	2629180	2629181	rs9264759	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	93,063 East Asian ancestry individuals	NA	6p21.33		rs9264759-C	0.695944	2E-40		0.0639223	[0.055-0.073] unit decrease	Illumina [13470073] (imputed)	N
605	chr6_mcf_hap5	2629728	2629729	rs2853941	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	RPL3P2	rs2853941-C	NR	1E-9		0.0174735	[0.012-0.023] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_mcf_hap5	2629897	2629898	rs9264764	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	RPL3P2	rs9264764-C	NR	4E-9		0.0168291	[0.011-0.022] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_mcf_hap5	2630092	2630093	rs7766089	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	RPL3P2	rs7766089-G	NR	5E-19		0.0281143	[0.022-0.034] unit increase	Affymetrix [323123] (imputed)	N
605	chr6_mcf_hap5	2630092	2630093	rs7766089	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	RPL3P2	rs7766089-G	NR	2E-20		0.0271218	[0.021-0.033] unit decrease	Affymetrix [321169] (imputed)	N
605	chr6_mcf_hap5	2630226	2630227	rs2853940	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gastric cancer	1,029 European ancestry cases, 475,087 European ancestry controls, 7,921 East Asian ancestry cases, 159,201 East Asian ancestry controls	NA	6p21.33		rs2853940-C	NR	8E-12		0.1087	[0.078-0.14] unit increase	Affymetrix, Illumina [25843697] (imputed)	N
605	chr6_mcf_hap5	2630226	2630227	rs2853940	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	RPL3P2	rs2853940-C	NR	3E-17		0.0246751	[0.019-0.03] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_mcf_hap5	2630226	2630227	rs2853940	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	RPL3P2	rs2853940-C	NR	4E-16		0.0237957	[0.018-0.03] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_mcf_hap5	2631135	2631136	rs2853939	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	RPL3P2	rs2853939-T	NR	2E-28		0.033269	[0.027-0.039] unit increase	Affymetrix [323123] (imputed)	N
605	chr6_mcf_hap5	2632888	2632889	rs2524054	20045101	Ferreira MA	2009-12-31	Am J Hum Genet	Quantitative trait loci for CD4:CD8 lymphocyte ratio are associated with risk of type 1 diabetes and HIV-1 immune control.	CD8-positive T-lymphocyte count	2,538 European ancestry twins from 1,089 families	988 individuals from 550 families	6p21.33	HLA-B	rs2524054-A	0.32	6E-21		0.37	[0.31-0.43] SD increase	Illumina [529721]	N
605	chr6_mcf_hap5	2632888	2632889	rs2524054	20045101	Ferreira MA	2009-12-31	Am J Hum Genet	Quantitative trait loci for CD4:CD8 lymphocyte ratio are associated with risk of type 1 diabetes and HIV-1 immune control.	CD4:CD8 lymphocyte ratio	2,538 European ancestry twins from 1,089 families	988 individuals from 550 families	6p21.33	HLA-B	rs2524054-A	0.32	2E-28		0.37	[0.31-0.43] SD increase	Illumina [529721]	N
605	chr6_mcf_hap5	2633417	2633418	rs12191877	26626624	Stuart PE	2015-11-28	Am J Hum Genet	Genome-wide Association Analysis of Psoriatic Arthritis and Cutaneous Psoriasis Reveals Differences in Their Genetic Architecture.	Psoriatic arthritis	1,946 European ancestry cases, 4,934 European ancestry controls	up to 2,883 European ancestry cases, up to 14,179 European ancestry controls		HLA-C, HLA-B, HLA, MHC	rs12191877-T	NR	2E-99		2.416	NR	Illumina [11532644] (imputed)	N
605	chr6_mcf_hap5	2633417	2633418	rs12191877	20953188	Ellinghaus E	2010-10-17	Nat Genet	Genome-wide association study identifies a psoriasis susceptibility locus at TRAF3IP2.	Psoriasis	472 European ancestry cases, 1,146 European ancestry controls	2,668, European ancestry cases, 762 French Canadian founder population cases, 2,585 cases, 3,485 European ancestry controls, 994 French Canadian founder population controls, 2,412 controls		HLA-C	rs12191877-?	NR	4E-32		2.79	[2.35-3.33]	Illumina [2339118] (imputed)	N
605	chr6_mcf_hap5	2633417	2633418	rs12191877	19169254	Nair RP	2009-01-25	Nat Genet	Genome-wide scan reveals association of psoriasis with IL-23 and NF-kappaB pathways.	Psoriasis	1,359 European ancestry cases, 1,400 European ancestry controls	5,048 European ancestry cases, 5,041 European ancestry controls		HLA-C	rs12191877-T	0.15	1E-100		2.64	[NR]	Perlegen [~ 2500000] (imputed)	N
605	chr6_mcf_hap5	2634579	2634580	rs2853933	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	WASF5P	rs2853933-T	NR	5E-17		0.0264491	[0.02-0.033] unit decrease	Affymetrix [323858] (imputed)	N
605	chr6_mcf_hap5	2634579	2634580	rs2853933	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	WASF5P	rs2853933-T	NR	5E-15		0.0246973	[0.019-0.031] unit decrease	Affymetrix [127266] (imputed)	N
605	chr6_mcf_hap5	2635499	2635500	rs13214872	33385400	Patrick MT	2020-12-29	J Invest Dermatol	Causal relationship and shared genetic loci between psoriasis and type 2 diabetes through trans-disease meta-analysis.	Psoriasis or type 2 diabetes (trans-disease meta-analysis)	11,024 European ancestry psoriasis cases, 74,124 European ancestry diabetes cases, 840,342 European ancestry controls	NA		NR	rs13214872-G	NR	2E-302		1.67	NR	NR [8016731] (imputed)	N
605	chr6_mcf_hap5	2635933	2635934	rs114598080	32421744	Gzara C	2020-05-18	PLoS Pathog	Family-based genome-wide association study of leprosy in Vietnam.	Leprosy	1,749 Vietnamese ancestry cases	1,181 Vietnamese ancestry cases, 688 Vietnamese ancestry controls	6p21.33	HLA-C	rs114598080-A	0.1	9E-13		1.47	[1.46-1.48]	Illumina [5607170] (imputed)	N
605	chr6_mcf_hap5	2638002	2638003	rs2853928	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for VLDL particles	115,082 European ancestry individuals	NA	6p21.33		rs2853928-A	0.298678	8E-11		0.0272348	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
605	chr6_mcf_hap5	2638002	2638003	rs2853928	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	HLA-C, WASF5P, XXbac-BPG248L24.13, HLA-B, XXbac-BPG248L24.12, USP8P1, RPL3P2, XXbac-BPG248L24.10, MIR6891	rs2853928-A	0.2253521	3E-12	(EA, Granzyme A)	0.3627	[0.26-0.46] unit decrease	Affymetrix [509946]	N
605	chr6_mcf_hap5	2638884	2638885	rs2844594	34785669	Grosche S	2021-11-16	Nat Commun	Rare variant analysis in eczema identifies exonic variants in DUSP1, NOTCH4 and SLC9A4.	Eczema	20,016 European ancestry cases, 380,433 European ancestry controls	NA	6p21.33		rs2844594-A	0.1766	3E-14		1.12		Affymetrix, Illumina [9397031] (imputed)	N
605	chr6_mcf_hap5	2638884	2638885	rs2844594	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HVEM on naive CD8+ T cell	1,247 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs2844594-A	0.38517	2E-10		0.276	[0.19-0.36] unit decrease	Illumina [16410374] (imputed)	N
605	chr6_mcf_hap5	2639328	2639329	rs9468925	20526339	Quan C	2010-06-06	Nat Genet	Genome-wide association study for vitiligo identifies susceptibility loci at 6q27 and the MHC.	Vitiligo	1,117 Han Chinese ancestry cases, 1,429 Han Chinese ancestry controls	6,623 East Asian ancestry cases, 10,740 East Asian ancestry controls	6p21.33	HLA	rs9468925-?	0.617	2E-33		1.35	[1.28-1.41]	Illumina [493909]	N
605	chr6_mcf_hap5	2640074	2640075	rs2524163	27286809	Ligthart S	2016-06-10	BMC Genomics	Bivariate genome-wide association study identifies novel pleiotropic loci for lipids and inflammation.	C-reactive protein levels or triglyceride levels (pleiotropy)	65,000 individuals (C-reactive protein), 96,598 individuals (triglycerides)	NA	6p21.33	HLA-C	rs2524163-T	NR	8E-10				NR [25015711] (imputed)	N
605	chr6_mcf_hap5	2640623	2640624	rs115464798	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	6p21.33	WASF5P	rs115464798-A	0.056192	5E-21		0.049840536	[0.039-0.06] unit decrease	Affymetrix [93095623] (imputed)	N
605	chr6_mcf_hap5	2643276	2643277	rs2524147	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs2524147-G	0.814	8E-65				Affymetrix [10369434] (imputed)	N
605	chr6_mcf_hap5	2644005	2644006	rs2524143	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs2524143-C	0.736	2E-52	(Killer cell immunoglobulin-like receptor 2DS2, KIR2DS2.10428.1.3)	0.43	[0.37-0.49] unit decrease	Affymetrix [10572788] (imputed)	N
605	chr6_mcf_hap5	2644017	2644018	rs2524142	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	6p21.33		rs2524142-C	0.299755	1E-8		0.0256476	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
605	chr6_mcf_hap5	2644017	2644018	rs2524142	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	6p21.33		rs2524142-C	0.299755	8E-10		0.02748	[0.019-0.036] unit decrease	NR [11722792] (imputed)	N
605	chr6_mcf_hap5	2644017	2644018	rs2524142	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs2524142-G	0.734	3E-22	(cAMP-specific 3',5'-cyclic phosphodiesterase 4D, PDE4D.5255.22.3)	0.28	[0.22-0.34] unit increase	Affymetrix [10572788] (imputed)	N
605	chr6_mcf_hap5	2644246	2644247	rs2894207	27436580	Cui Q	2016-07-19	Hum Mol Genet	An extended genome-wide association study identifies novel susceptibility loci for nasopharyngeal carcinoma.	Nasopharyngeal carcinoma	1,583 Southern Chinese ancestry cases, 2,979 Southern Chinese ancestry controls	5,463 Southern Chinese ancestry cases, 5,591 Southern Chinese ancestry controls	6p21.33	NR	rs2894207-?	0.84	2E-19		1.96	[1.69-2.27]	Illumina [463250]	N
605	chr6_mcf_hap5	2644246	2644247	rs2894207	20512145	Bei JX	2010-05-30	Nat Genet	A genome-wide association study of nasopharyngeal carcinoma identifies three new susceptibility loci.	Nasopharyngeal carcinoma	1,583 Chinese ancestry cases, 1,894 Chinese ancestry controls	3,507 Chinese ancestry cases, 3,063 Chinese ancestry controls, 284  Chinese ancestry trios	6p21.33	HLA-C, HLA-B	rs2894207-?	0.82	3E-33		1.64	[1.52-1.75]	Illumina [464328]	N
605	chr6_mcf_hap5	2644296	2644297	rs114583506	33483693	Clements CC	2021-01-22	Mol Psychiatry	Genome-wide association study of patients with a severe major depressive episode treated with electroconvulsive therapy.	Major depressive episode treated with electroconvulsive therapy	2,725 European ancestry cases, 3,290 European ancestry controls	NA	6p21.33	HLA-C	rs114583506-?	NR	4E-8		0.5992	[0.42-0.78]	Illumina [NR] (imputed)	N
605	chr6_mcf_hap5	2644296	2644297	rs114583506	33483693	Clements CC	2021-01-22	Mol Psychiatry	Genome-wide association study of patients with a severe major depressive episode treated with electroconvulsive therapy.	Major depressive disorder and major depressive episode treated with electroconvulsive therapy	1,796 European ancestry cases, 3,290 European ancestry controls	NA	6p21.33	HLA-C	rs114583506-?	NR	1E-7		0.5845	[0.39-0.78]	Illumina [NR] (imputed)	N
605	chr6_mcf_hap5	2644637	2644638	rs2524139	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	XXbac-BPG248L24.13	rs2524139-C	0.734	2E-52	(Killer cell immunoglobulin-like receptor 2DS2, KIR2DS2.10428.1.3)	0.43	[0.37-0.49] unit decrease	Affymetrix [10572788] (imputed)	N
605	chr6_mcf_hap5	2644896	2644897	rs9380237	32558222	Okamura K	2020-06-18	Pigment Cell Melanoma Res	Genome-wide association study identifies CDH13 as a susceptibility gene for rhododendrol-induced leukoderma.	Leukoderma in response to rhododendrol	147 Japanese ancestry cases, 112 Japanese ancestry controls	NA	6p21.33	HLA-B, HLA-C	rs9380237-?	NR	8E-6		3.5714285	[1.96-6.25]	Illumina [1057565]	N
605	chr6_mcf_hap5	2644965	2644966	rs3094682	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	6p21.33	NR	rs3094682-C	0.8056	2E-23		0.0598	[0.048-0.072] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
605	chr6_mcf_hap5	2645627	2645628	rs55745121	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	6p21.33	XXbac-BPG248L24.13	rs55745121-C	0.00771999999999995	2E-12		0.103537746	[0.075-0.132] unit increase	Affymetrix [93095623] (imputed)	N
605	chr6_mcf_hap5	2645639	2645640	rs2524129	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2524129-C	0.298408	4E-18		0.0377033	[0.029-0.046] unit decrease	NR [11722792] (imputed)	N
605	chr6_mcf_hap5	2645639	2645640	rs2524129	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small LDL	115,082 European ancestry individuals	NA	6p21.33		rs2524129-C	0.298408	2E-16		0.0359658	[0.027-0.045] unit decrease	NR [11722792] (imputed)	N
605	chr6_mcf_hap5	2645639	2645640	rs2524129	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2524129-C	0.298408	5E-15		0.0341259	[0.026-0.043] unit decrease	NR [11722792] (imputed)	N
605	chr6_mcf_hap5	2645639	2645640	rs2524129	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium LDL	115,082 European ancestry individuals	NA	6p21.33		rs2524129-C	0.298408	5E-17		0.036788	[0.028-0.045] unit decrease	NR [11722792] (imputed)	N
605	chr6_mcf_hap5	2645639	2645640	rs2524129	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2524129-C	0.298408	3E-14		0.0327886	[0.024-0.041] unit decrease	NR [11722792] (imputed)	N
605	chr6_mcf_hap5	2645639	2645640	rs2524129	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total triglycerides levels	115,082 European ancestry individuals	NA	6p21.33		rs2524129-C	0.298408	3E-15		0.0342705	[0.026-0.043] unit decrease	NR [11722792] (imputed)	N
605	chr6_mcf_hap5	2645639	2645640	rs2524129	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2524129-C	0.298408	2E-11		0.0290519	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
605	chr6_mcf_hap5	2645766	2645767	rs2246954	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.13	rs2246954-A	NR	2E-8		0.0159083	[0.01-0.021] unit decrease	Affymetrix [321114] (imputed)	N
605	chr6_mcf_hap5	2645766	2645767	rs2246954	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.13	rs2246954-A	NR	1E-9		0.0195845	[0.013-0.026] unit increase	Affymetrix [323858] (imputed)	N
605	chr6_mcf_hap5	2645994	2645995	rs2247056	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-3 fatty acid levels	115,006 European ancestry individuals	NA	6p21.33		rs2247056-T	0.296693	2E-16		0.0356403	[0.027-0.044] unit decrease	NR [11722792] (imputed)	N
605	chr6_mcf_hap5	2645994	2645995	rs2247056	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2247056-T	0.296684	6E-12		0.0298649	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
605	chr6_mcf_hap5	2645994	2645995	rs2247056	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.33	NR	rs2247056-T	NR	2E-14		0.034	unit decrease	Affymetrix [at least 7091467] (imputed)	N
605	chr6_mcf_hap5	2645994	2645995	rs2247056	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.33	NR	rs2247056-T	0.249	1E-12	(EA)	0.034	unit decrease	Affymetrix [at least 7091467] (imputed)	N
605	chr6_mcf_hap5	2645994	2645995	rs2247056	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.33	NR	rs2247056-T	NR	2E-18		0.043	unit decrease	Affymetrix [at least 7091467] (imputed)	N
605	chr6_mcf_hap5	2645994	2645995	rs2247056	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.33	NR	rs2247056-T	0.249	2E-17	(EA)	0.045	unit decrease	Affymetrix [at least 7091467] (imputed)	N
605	chr6_mcf_hap5	2645994	2645995	rs2247056	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.33	NR	rs2247056-T	NR	2E-8		0.028	unit decrease	Affymetrix [at least 7091467] (imputed)	N
605	chr6_mcf_hap5	2645994	2645995	rs2247056	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.33	NR	rs2247056-T	0.249	6E-8	(EA)	0.029	unit decrease	Affymetrix [at least 7091467] (imputed)	N
605	chr6_mcf_hap5	2645994	2645995	rs2247056	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	6p21.33	HLA-C, HLA-B	rs2247056-T	0.27	4E-12		1.18	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
605	chr6_mcf_hap5	2645994	2645995	rs2247056	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	Triglycerides	96,598 European ancestry individuals	NA	6p21.33	HLA	rs2247056-T	0.25	2E-15		2.99	[2.17-3.81] mg/dL decrease	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
605	chr6_mcf_hap5	2646241	2646242	rs2853923	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.13	rs2853923-G	NR	4E-8		0.0175506	[0.011-0.024] unit decrease	Affymetrix [323858] (imputed)	N
605	chr6_mcf_hap5	2646545	2646546	rs17192526	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.13	rs17192526-C	NR	1E-9		0.0195758	[0.013-0.026] unit increase	Affymetrix [323858] (imputed)	N
605	chr6_mcf_hap5	2646545	2646546	rs17192526	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.13	rs17192526-C	NR	8E-9		0.0185107	[0.012-0.025] unit increase	Affymetrix [127266] (imputed)	N
605	chr6_mcf_hap5	2646545	2646546	rs17192526	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.13	rs17192526-C	NR	2E-18		0.0275913	[0.021-0.034] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_mcf_hap5	2646594	2646595	rs4406273	26626624	Stuart PE	2015-11-28	Am J Hum Genet	Genome-wide Association Analysis of Psoriatic Arthritis and Cutaneous Psoriasis Reveals Differences in Their Genetic Architecture.	Psoriasis vulgaris	4,007 European ancestry cases, 4,934 European ancestry controls	up to 9,075 European ancestry cases, up to European ancestry 12,726 controls	6p21.33	HLA-B, HLA-C	rs4406273-A	NR	2E-312		3.38	NR	Illumina [up to 11532644] (imputed)	N
605	chr6_mcf_hap5	2646594	2646595	rs4406273	23143594	Tsoi LC	2012-12-01	Nat Genet	Identification of 15 new psoriasis susceptibility loci highlights the role of innate immunity.	Psoriasis	10,588 European ancestry cases, 22,806 European ancestry controls	NA	6p21.33	HLA-B, HLA-C	rs4406273-A	0.092	5E-723		4.32		Illumina [111236] (imputed)	N
605	chr6_mcf_hap5	2646621	2646622	rs2524095	31879980	German CA	2019-12-26	Genet Epidemiol	Ordered multinomial regression for genetic association analysis of ordinal phenotypes at Biobank scale.	Hypertension	30,822 British ancestry normal blood pressure individuals, 25,242 British ancestry elevated blood pressure individuals, 50,461 British ancestry stage 1 hypertension individuals, 75,286 British ancestry stage 2 hypertension individuals, 3,754 British ancestry hypertension crisis individuals	NA	6p21.33	LINC02571	rs2524095-?	NR	1E-9		0.03838402	NR unit increase	Affymetrix [464137]	N
605	chr6_mcf_hap5	2648436	2648437	rs28367631	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	WASF5P, HLA-C, XXbac-BPG248L24.10, USP8P1, RPL3P2, XXbac-BPG248L24.13	rs28367631-T	0.3457286	1E-15	(EA, MHC class I polypeptide-related sequence A)	0.3635	[0.28-0.45] unit decrease	Affymetrix [509946]	N
605	chr6_mcf_hap5	2648614	2648615	rs2524046	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.13	rs2524046-T	NR	1E-10		0.0223645	[0.016-0.029] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_mcf_hap5	2648615	2648616	rs2524045	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.13	rs2524045-G	NR	7E-11		0.022607	[0.016-0.029] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_mcf_hap5	2649142	2649143	rs28367657	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.13	rs28367657-A	NR	1E-12		0.0243391	[0.018-0.031] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_mcf_hap5	2649674	2649675	rs9366778	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR		HLA-C	rs9366778-G	0.626619	3E-11		0.018043	[0.013-0.023] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
605	chr6_mcf_hap5	2649987	2649988	rs2844592	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gastric polyp	6,155 European ancestry cases, 341,871 European ancestry controls, 1,337 East Asian ancestry cases, 158,249 East Asian ancestry controls	NA	6p21.33		rs2844592-G	NR	4E-8		0.0998	[0.064-0.135] unit increase	Affymetrix, Illumina [20456140] (imputed)	N
605	chr6_mcf_hap5	2650190	2650191	rs114985235	26891255	Jung ES	2016-02-18	Inflamm Bowel Dis	HLA-C*01 is a Risk Factor for Crohn's Disease.	Crohn's disease	275 Korean ancestry cases, 2,369 Korean ancestry controls	242 Korean ancestry cases, 1,066 Korean ancestry controls	6p21.33	HLA-B, HLA-C	rs114985235-C	0.12	9E-23		2.25	[1.91-2.66]	Affymetrix [3387207] (imputed)	N
605	chr6_mcf_hap5	2650443	2650444	rs12211087	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Depression	at least 5,919 European ancestry cases, at least 130,691 European ancestry controls	634,037 European ancestry cases, 1,308,690 European ancestry controls	6p21.33	XXbac, BPG248L24.13	rs12211087-T	0.09841	2E-6		0.018283794	[0.0097-0.0269] unit decrease	NR [9417325] (imputed)	N
605	chr6_mcf_hap5	2650680	2650681	rs9468939	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.13	rs9468939-C	NR	6E-9		0.0177651	[0.012-0.024] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_mcf_hap5	2650853	2650854	rs9264798	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p21.33		rs9264798-C	0.826	9E-36				Affymetrix [10369434] (imputed)	N
605	chr6_mcf_hap5	2650901	2650902	rs9264801	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.33		rs9264801-C	0.826	5E-63				Affymetrix [10369434] (imputed)	N
605	chr6_mcf_hap5	2651292	2651293	rs142628781	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.33		rs142628781-T	0.070905	3E-14		1.080437	[1.06-1.1]	Affymetrix, Illumina [9851866] (imputed)	N
605	chr6_mcf_hap5	2651570	2651571	rs9264845	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs9264845-C	0.258	3E-16	(MHC class I polypeptide-related sequence B, MICB.5102.55.3)	0.26	[0.2-0.32] unit decrease	Affymetrix [10572788] (imputed)	N
605	chr6_mcf_hap5	2652061	2652062	rs7750963	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large VLDL	115,082 European ancestry individuals	NA	6p21.33		rs7750963-A	0.298149	7E-13		0.0308157	[0.022-0.039] unit decrease	NR [11722792] (imputed)	N
605	chr6_mcf_hap5	2652061	2652062	rs7750963	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large VLDL	115,082 European ancestry individuals	NA	6p21.33		rs7750963-A	0.298149	3E-12		0.0302555	[0.022-0.039] unit decrease	NR [11722792] (imputed)	N
605	chr6_mcf_hap5	2652061	2652062	rs7750963	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6p21.33		rs7750963-A	0.298149	7E-9		0.0250346	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
605	chr6_mcf_hap5	2652061	2652062	rs7750963	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs7750963-G	0.882	8E-43	(Killer cell immunoglobulin-like receptor 2DS2, KIR2DS2.10428.1.3)	0.59	[0.51-0.67] unit decrease	Affymetrix [10572788] (imputed)	N
605	chr6_mcf_hap5	2652210	2652211	rs9461688	18464913	Melzer D	2008-05-09	PLoS Genet	A genome-wide association study identifies protein quantitative trait loci (pQTLs).	Protein quantitative trait loci	1,200 European ancestry individuals	up to 4,590 European ancestry individuals	6p21.33	HLA-C	rs9461688-?	0.31	4E-6	(IL18)			Illumina [496032]	N
605	chr6_mcf_hap5	2652229	2652230	rs9264875	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Lectin-like oxidized LDL receptor 1 levels	21,758 European ancestry individuals	9,173 individuals	6p21.33		rs9264875-C	0.12	2E-9		0.092	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
605	chr6_mcf_hap5	2652695	2652696	rs556990455	32534018	Liu X	2020-06-10	Brain Behav Immun	Genetic factors underlying the bidirectional relationship between autoimmune and mental disorders - findings from a Danish population-based study.	Autoimmune traits	1,383 Danish ancestry cases, 62,656 Danish ancestry controls	NA	6p21.33	NR	rs556990455-T	0.016	7E-11		2.23	[1.79-2.77]	NR [7721839] (imputed)	N
605	chr6_mcf_hap5	2652755	2652756	rs6457374	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs6457374-T	0.753	2E-34	(MHC class I polypeptide-related sequence B, MICB.5102.55.3)	0.39	[0.33-0.45] unit increase	Affymetrix [10572788] (imputed)	N
605	chr6_mcf_hap5	2652755	2652756	rs6457374	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	6p21.33	HLA-C	rs6457374-T	0.73	8E-35		0.041	[0.035-0.047] unit decrease	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
605	chr6_mcf_hap5	2652815	2652816	rs9368677	23042114	Hirota T	2012-10-07	Nat Genet	Genome-wide association study identifies eight new susceptibility loci for atopic dermatitis in the Japanese population.	Atopic dermatitis	1,472 Japanese ancestry cases, 7,971 Japanese ancestry controls	1,856 Japanese ancestry cases, 7,021 Japanese ancestry controls	6p21.33	HLA-C	rs9368677-G	0.798	1E-17		1.36	[1.27-1.46]	Illumina [606164]	N
605	chr6_mcf_hap5	2653047	2653048	rs9264904	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.33		rs9264904-G	0.739	4E-158				Affymetrix [10369434] (imputed)	N
605	chr6_mcf_hap5	2653047	2653048	rs9264904	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.10	rs9264904-A	NR	3E-11		0.0214122	[0.015-0.028] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_mcf_hap5	2653047	2653048	rs9264904	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.10	rs9264904-A	NR	8E-11		0.0209999	[0.015-0.027] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_mcf_hap5	2653047	2653048	rs9264904	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.10	rs9264904-A	NR	8E-9		0.0188102	[0.012-0.025] unit increase	Affymetrix [321169] (imputed)	N
605	chr6_mcf_hap5	2653047	2653048	rs9264904	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	6p21.33	XXbac-BPG248L24.13	rs9264904-A	0.260825	6E-13		0.019344117	[0.014-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
605	chr6_mcf_hap5	2653047	2653048	rs9264904	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	6p21.33	NR	rs9264904-A	0.262119	3E-387		0.091059	[0.087-0.095] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
605	chr6_mcf_hap5	2653991	2653992	rs2508008	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p21.33	NR	rs2508008-G	0.119	3E-6	(IFNAR2_of_CD8p_T)			Illumina [5084123] (imputed)	N
605	chr6_mcf_hap5	2654239	2654240	rs3873386	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.10	rs3873386-C	NR	9E-11		0.0189406	[0.013-0.025] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_mcf_hap5	2654521	2654522	rs1634761	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.10	rs1634761-T	NR	6E-12		0.0193034	[0.014-0.025] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_mcf_hap5	2654521	2654522	rs1634761	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.10	rs1634761-T	NR	1E-13		0.0211552	[0.016-0.027] unit increase	Affymetrix [321169] (imputed)	N
605	chr6_mcf_hap5	2654792	2654793	rs9264941	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	6p21.33	XXbac-BPG248L24.13	rs9264941-A	0.167	6E-44		0.066809	[0.057-0.076] unit increase	Affymetrix [~ 2500000] (imputed)	N
605	chr6_mcf_hap5	2654874	2654875	rs9264942	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	6p21.33	NR	rs9264942-?	NR	5E-25	(EA)			Affymetrix, Illumina [~ 9000000] (imputed)	N
605	chr6_mcf_hap5	2654874	2654875	rs9264942	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Crohn's disease	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls	6p21.33	PSORS1C1, NFKBIL1, HLA-C, MICB	rs9264942-C	0.378	5E-28		1.145	[1.107-1.184]	Affymetrix, Illumina [1230000] (imputed)	N
605	chr6_mcf_hap5	2654874	2654875	rs9264942	21051598	Pereyra F	2010-11-04	Science	The major genetic determinants of HIV-1 control affect HLA class I peptide presentation.	HIV-1 control	516 European cases, 1,196 European controls, 341 African American cases, 892 African American controls, 117 Hispanic cases, 560 Hispanic controls	NA	6p21.33	HLA-C	rs9264942-C	0.34	3E-35	(EA)	2.9	[NR]	Illumina [1384048] (imputed)	N
605	chr6_mcf_hap5	2654874	2654875	rs9264942	20041166	Fellay J	2009-12-24	PLoS Genet	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	6p21.33	HLA-C	rs9264942-C	0.412	6E-32	(setpoint)	5.3	[NR] % increase	Illumina [NR]	N
605	chr6_mcf_hap5	2654874	2654875	rs9264942	20041166	Fellay J	2009-12-24	PLoS Genet	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	6p21.33	HLA-C	rs9264942-?	NR	6E-12	(progression)			Illumina [NR]	N
605	chr6_mcf_hap5	2655068	2655069	rs10484554	33385400	Patrick MT	2020-12-29	J Invest Dermatol	Causal relationship and shared genetic loci between psoriasis and type 2 diabetes through trans-disease meta-analysis.	Psoriasis or type 2 diabetes (trans-disease meta-analysis)(opposite effect)	11,024 European ancestry psoriasis cases, 74,124 European ancestry diabetes cases, 840,342 European ancestry controls	NA	6p21.33	NR	rs10484554-T		2E-302		1.67		NR [8016731] (imputed)	N
605	chr6_mcf_hap5	2655068	2655069	rs10484554	26626624	Stuart PE	2015-11-28	Am J Hum Genet	Genome-wide Association Analysis of Psoriatic Arthritis and Cutaneous Psoriasis Reveals Differences in Their Genetic Architecture.	Cutaneous psoriasis	1,363 European ancestry cases, 4,934 European ancestry controls	up to 2,969 European ancestry cases, up to European ancestry 14,384 controls	6p21.33	HLA, HLA-C	rs10484554-T	NR	4E-207		3.304	NR	Illumina [11532644] (imputed)	N
605	chr6_mcf_hap5	2655068	2655069	rs10484554	20953190	Strange A	2010-10-17	Nat Genet	A genome-wide association study identifies new psoriasis susceptibility loci and an interaction between HLA-C and ERAP1.	Psoriasis	2,178 European ancestry cases, 5,175 European ancestry controls	3,174 European ancestry cases, 5,464 European ancestry controls	6p21.33	HLA-C	rs10484554-?	NR	4E-214		4.66	[4.23-5.13]	Illumina [535475]	N
605	chr6_mcf_hap5	2655068	2655069	rs10484554	19115949	Limou S	2009-01-01	J Infect Dis	Genomewide association study of an AIDS-nonprogression cohort emphasizes the role played by HLA genes (ANRS Genomewide Association Study 02).	AIDS progression	275 European ancestry seropositive non-progressors, 86 European ancestry seropositive rapid progressors, 1,352 European ancestry seronegative controls	(see Fellay 2007)	6p21.33	HLA-C	rs10484554-T	0.13	6E-8				Illumina [291119]	N
605	chr6_mcf_hap5	2655068	2655069	rs10484554	18369459	Liu Y	2008-04-04	PLoS Genet	A genome-wide association study of psoriasis and psoriatic arthritis identifies new disease loci.	Psoriasis	218 European ancestry cases, 519 European ancestry controls	1,153 European ancestry cases, 1,217 European ancestry controls	6p21.33	HLA-C	rs10484554-T	0.15	2E-39		2.8	[2.40-3.30]	Illumina [305983]	N
605	chr6_mcf_hap5	2655099	2655100	rs9348865	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.10	rs9348865-G	NR	4E-10		0.0204625	[0.014-0.027] unit increase	Affymetrix [323858] (imputed)	N
605	chr6_mcf_hap5	2655099	2655100	rs9348865	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.10	rs9348865-G	NR	3E-9		0.0194694	[0.013-0.026] unit increase	Affymetrix [127266] (imputed)	N
605	chr6_mcf_hap5	2655099	2655100	rs9348865	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6p21.33	XXbac-BPG248L24.10	rs9348865-G	0.351828	2E-14		0.024740536	[0.018-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
605	chr6_mcf_hap5	2655140	2655141	rs9264945	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	6p21.33	XXbac-BPG248L24.10	rs9264945-A	0.133478	2E-29		0.0345332	[0.028-0.041] unit increase	Affymetrix [93095623] (imputed)	N
605	chr6_mcf_hap5	2655206	2655207	rs3094691	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.10	rs3094691-A	NR	1E-9		0.0192715	[0.013-0.025] unit increase	Affymetrix [323858] (imputed)	N
605	chr6_mcf_hap5	2655206	2655207	rs3094691	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.10	rs3094691-A	NR	2E-8		0.0178577	[0.012-0.024] unit increase	Affymetrix [127266] (imputed)	N
605	chr6_mcf_hap5	2655206	2655207	rs3094691	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.10	rs3094691-A	NR	4E-15		0.0225202	[0.017-0.028] unit increase	Affymetrix [321169] (imputed)	N
605	chr6_mcf_hap5	2655265	2655266	rs3132479	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.10	rs3132479-G	NR	2E-12		0.019918	[0.014-0.025] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_mcf_hap5	2655265	2655266	rs3132479	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.10	rs3132479-G	NR	3E-14		0.0234978	[0.017-0.03] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_mcf_hap5	2655265	2655266	rs3132479	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	6p21.33	XXbac-BPG248L24.10	rs3132479-A	0.5388	2E-7		0.0369	[0.023-0.051] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
605	chr6_mcf_hap5	2655265	2655266	rs3132479	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Perceived unattractiveness to mosquitoes	16,576 European ancestry individuals	NA	6p21.33	HLA-C, MICA	rs3132479-G	0.466	6E-7		0.11555	[0.07-0.161] unit decrease	Illumina [7433384] (imputed)	N
605	chr6_mcf_hap5	2655307	2655307	rs540653847	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6p21.33	XXbac-BPG248L24.10	rs540653847-GC	0.00672899999999999	3E-18		0.12216329	[0.095-0.15] unit increase	Affymetrix [93095623] (imputed)	N
605	chr6_mcf_hap5	2655307	2655307	rs540653847	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	6p21.33	XXbac-BPG248L24.10	rs540653847-GC	0.0064	8E-9		0.1328338	[0.088-0.178] unit increase	Affymetrix [~ 2500000] (imputed)	N
605	chr6_mcf_hap5	2655307	2655307	rs540653847	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	6p21.33	XXbac-BPG248L24.10	rs540653847-GC	0.0064	6E-10		0.1418412	[0.097-0.187] unit increase	Affymetrix [~ 2500000] (imputed)	N
605	chr6_mcf_hap5	2655332	2655332	rs5875308	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.33	XXbac-BPG248L24.10	rs5875308-CA	0.2653	7E-6		0.0365	[0.021-0.052] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
605	chr6_mcf_hap5	2656173	2656174	rs3873387	29532581	Hallfors J	2018-03-13	Addict Biol	Genome-wide association study in Finnish twins highlights the connection between nicotine addiction and neurotrophin signaling pathway.	Smoking behaviour (maximum cigarettes in a 24 hour period)	1,711 Finnish ancestry ever smoker individuals from up to 739 families	NA	6p21.33	NR	rs3873387-A	0.24743	1E-6		2.706126	[1.61-3.80] unit decrease	Illumina [9469131] (imputed)	N
605	chr6_mcf_hap5	2656337	2656338	rs3873388	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.10	rs3873388-G	NR	8E-10		0.0213529	[0.015-0.028] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_mcf_hap5	2656824	2656825	rs1634794	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.33	Intergenic	rs1634794-T	NR	7E-10	(women)	0.0287016	[0.02-0.038] unit decrease	Illumina [13520550] (imputed)	N
605	chr6_mcf_hap5	2656945	2656946	rs9264962	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.33	Intergenic	rs9264962-G	NR	8E-13		0.0264842	[0.019-0.034] unit increase	Illumina [13520550] (imputed)	N
605	chr6_mcf_hap5	2656957	2656958	rs1005599	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small HDL	115,082 European ancestry individuals	NA	6p21.33		rs1005599-G	0.289198	3E-16		0.0361878	[0.028-0.045] unit decrease	NR [11722792] (imputed)	N
605	chr6_mcf_hap5	2656957	2656958	rs1005599	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium HDL	115,082 European ancestry individuals	NA	6p21.33		rs1005599-G	0.289198	5E-16		0.0364668	[0.028-0.045] unit decrease	NR [11722792] (imputed)	N
605	chr6_mcf_hap5	2656957	2656958	rs1005599	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in HDL	115,082 European ancestry individuals	NA	6p21.33		rs1005599-G	0.289198	2E-15		0.0354759	[0.027-0.044] unit decrease	NR [11722792] (imputed)	N
605	chr6_mcf_hap5	2656957	2656958	rs1005599	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small HDL	115,082 European ancestry individuals	NA	6p21.33		rs1005599-G	0.289198	1E-19		0.0413294	[0.032-0.05] unit decrease	NR [11722792] (imputed)	N
605	chr6_mcf_hap5	2656957	2656958	rs1005599	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total fatty acid levels	115,006 European ancestry individuals	NA	6p21.33		rs1005599-G	0.289208	7E-21		0.0423272	[0.033-0.051] unit decrease	NR [11722792] (imputed)	N
605	chr6_mcf_hap5	2656957	2656958	rs1005599	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Saturated fatty acid levels	115,006 European ancestry individuals	NA	6p21.33		rs1005599-G	0.289208	7E-16		0.0364401	[0.028-0.045] unit decrease	NR [11722792] (imputed)	N
605	chr6_mcf_hap5	2656957	2656958	rs1005599	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small HDL	115,082 European ancestry individuals	NA	6p21.33		rs1005599-G	0.289198	8E-20		0.0413457	[0.032-0.05] unit decrease	NR [11722792] (imputed)	N
605	chr6_mcf_hap5	2656957	2656958	rs1005599	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Monounsaturated fatty acid levels	115,006 European ancestry individuals	NA	6p21.33		rs1005599-G	0.289208	4E-19		0.040361	[0.032-0.049] unit decrease	NR [11722792] (imputed)	N
605	chr6_mcf_hap5	2656957	2656958	rs1005599	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycoprotein acetyls levels	115,082 European ancestry individuals	NA	6p21.33		rs1005599-G	0.289198	4E-32		0.0533982	[0.045-0.062] unit decrease	NR [11722792] (imputed)	N
605	chr6_mcf_hap5	2657287	2657288	rs1634791	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total free cholesterol levels	115,082 European ancestry individuals	NA	6p21.33		rs1634791-A	0.450407	2E-10		0.0263105	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
605	chr6_mcf_hap5	2657287	2657288	rs1634791	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total esterified cholesterol levels	115,082 European ancestry individuals	NA	6p21.33		rs1634791-A	0.450407	6E-11		0.0267294	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
605	chr6_mcf_hap5	2657287	2657288	rs1634791	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol levels	115,082 European ancestry individuals	NA	6p21.33		rs1634791-A	0.450407	7E-11		0.0267605	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
605	chr6_mcf_hap5	2657287	2657288	rs1634791	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Sphingomyelin levels	115,006 European ancestry individuals	NA	6p21.33		rs1634791-A	0.450416	2E-11		0.0265776	[0.019-0.034] unit decrease	NR [11722792] (imputed)	N
605	chr6_mcf_hap5	2657287	2657288	rs1634791	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in LDL	115,082 European ancestry individuals	NA	6p21.33		rs1634791-A	0.450407	7E-10		0.0260256	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
605	chr6_mcf_hap5	2657287	2657288	rs1634791	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	6p21.33	NR	rs1634791-A	0.455909	8E-23		0.011832	[0.0093-0.0143] unit increase	Affymetrix [16585854] (imputed)	N
605	chr6_mcf_hap5	2657287	2657288	rs1634791	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	6p21.33	NR	rs1634791-A	0.455909	1E-12		0.0102161	[0.0074-0.0131] unit increase	Affymetrix [16585866] (imputed)	N
605	chr6_mcf_hap5	2660722	2660723	rs117298325	30498034	Terao C	2018-11-29	Proc Natl Acad Sci U S A	Genetic determinants and an epistasis of LILRA3 and HLA-B*52 in Takayasu arteritis.	Takayasu arteritis	411 Japanese ancestry cases, 2,158 Japanese ancestry controls	219 Japanese ancestry cases, 3,770 Japanese ancestry controls	6p21.33	HLA-B	rs117298325-C	NR	4E-34				Illumina [5878075] (imputed)	N
605	chr6_mcf_hap5	2664103	2664104	rs1634783	31738830	McGraw KL	2019-11-01	Blood Adv	Non-del(5q) myelodysplastic syndromes-associated loci detected by SNP-array genome-wide association meta-analysis.	Non-del(5q) myelodysplastic syndromes	907 European ancestry cases, 5,605 European ancestry controls	NA	6p21.33	intergenic	rs1634783-G	0.5	8E-7		1.3157895	[1.19-1.49]	Affymetrix [7515136] (imputed)	N
605	chr6_mcf_hap5	2664566	2664567	rs1634738	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs1634738-A	0.276	1E-14	(alpha-2-macroglobulin receptor-associated protein, LRPAP1.8829.4.3)	0.22	[0.16-0.28] unit increase	Affymetrix [10572788] (imputed)	N
605	chr6_mcf_hap5	2666559	2666560	rs28367727	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	6p21.33	NR	rs28367727-G	0.229348	1E-9		0.0520093	[0.035-0.069] unit decrease	Affymetrix [17914406] (imputed)	N
605	chr6_mcf_hap5	2667956	2667957	rs9265113	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	6p21.33		rs9265113-C	0.592366	4E-13		0.0285779	[0.021-0.036] unit increase	NR [11722792] (imputed)	N
605	chr6_mcf_hap5	2667956	2667957	rs9265113	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large HDL	115,082 European ancestry individuals	NA	6p21.33		rs9265113-C	0.592366	3E-13		0.0287846	[0.021-0.037] unit increase	NR [11722792] (imputed)	N
605	chr6_mcf_hap5	2667956	2667957	rs9265113	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	6p21.33		rs9265113-C	0.592366	2E-12		0.0277589	[0.02-0.035] unit increase	NR [11722792] (imputed)	N
605	chr6_mcf_hap5	2667956	2667957	rs9265113	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	6p21.33		rs9265113-C	0.592366	8E-13		0.0281895	[0.02-0.036] unit increase	NR [11722792] (imputed)	N
605	chr6_mcf_hap5	2667956	2667957	rs9265113	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	6p21.33		rs9265113-C	0.592366	2E-12		0.0281201	[0.02-0.036] unit increase	NR [11722792] (imputed)	N
605	chr6_mcf_hap5	2667956	2667957	rs9265113	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	6p21.33		rs9265113-C	0.592366	3E-13		0.0295629	[0.022-0.037] unit increase	NR [11722792] (imputed)	N
605	chr6_mcf_hap5	2667956	2667957	rs9265113	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	6p21.33		rs9265113-C	0.592366	1E-12		0.0281506	[0.02-0.036] unit increase	NR [11722792] (imputed)	N
605	chr6_mcf_hap5	2667956	2667957	rs9265113	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	6p21.33		rs9265113-C	0.592366	1E-11		0.0270795	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
605	chr6_mcf_hap5	2668491	2668492	rs9265143	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p21.33	NR	rs9265143-A	0.408	6E-6	(IFNalpha_STAT1_of_CD4p_T)			Illumina [5084123] (imputed)	N
605	chr6_mcf_hap5	2668702	2668703	rs4445093	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (vasodilators used in cardiac diseases)	5,546 European ancestry cases, 237,113 European ancestry controls, 17,050 East Asian ancestry cases, 161,676 East Asian ancestry controls	NA	6p21.33		rs4445093-T	NR	3E-8		0.0768	[0.05-0.104] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
605	chr6_mcf_hap5	2669339	2669340	rs9265153	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Angiopoietin-1 receptor levels	21,758 European ancestry individuals	9,173 individuals	6p21.33		rs9265153-C	0.37	1E-10		0.0638	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
605	chr6_mcf_hap5	2669403	2669404	rs7748141	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PDIA5	5,366 Icelandic ancestry individuals	NA	6p21.33		rs7748141-C	0.07983	2E-47		0.504487	[0.44-0.57] unit increase	Illumina [7506463] (imputed)	N
605	chr6_mcf_hap5	2678470	2678471	rs28895001	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.33		rs28895001-T	0.163489	8E-27		0.045384236	[0.037-0.054] unit decrease	Affymetrix [93095623] (imputed)	N
605	chr6_mcf_hap5	2679028	2679029	rs7772894	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on memory B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs7772894-T	0.10721	3E-9		0.2956	[0.2-0.39] unit increase	Illumina [18238311] (imputed)	N
605	chr6_mcf_hap5	2679028	2679029	rs7772894	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on CD24+ CD27+ B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs7772894-T	0.10721	3E-9		0.2945	[0.2-0.39] unit increase	Illumina [18238311] (imputed)	N
605	chr6_mcf_hap5	2679392	2679393	rs17192757	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling miserable	376,097 European ancestry individuals	NA	6p21.33	PSORS1C1	rs17192757-A	0.132647	5E-8		5.46	z score increase	NR [10847151] (imputed)	N
605	chr6_mcf_hap5	2679424	2679424	rs111743557	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-B	rs111743557-TTG	NR	5E-9		0.0221507	[0.015-0.03] unit decrease	Affymetrix [323858] (imputed)	N
605	chr6_mcf_hap5	2679424	2679424	rs111743557	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HLA-B	rs111743557-TTG	NR	2E-8		0.0212612	[0.014-0.029] unit decrease	Affymetrix [127266] (imputed)	N
605	chr6_mcf_hap5	2679424	2679424	rs111743557	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.33	NR	rs111743557-T	0.888	2E-18	(conditional)	0.729	[0.66-0.8]	Illumina [11270530] (imputed)	N
605	chr6_mcf_hap5	2679611	2679612	rs9265620	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	6p21.33		rs9265620-T	0.629786	1E-11		0.0263927	[0.019-0.034] unit decrease	NR [11722792] (imputed)	N
605	chr6_mcf_hap5	2679611	2679612	rs9265620	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	6p21.33		rs9265620-T	0.629787	7E-13		0.0279211	[0.02-0.036] unit increase	NR [11722792] (imputed)	N
605	chr6_mcf_hap5	2680210	2680211	rs6902116	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	6p21.33	HLA-B	rs6902116-A	0.677972	2E-40		0.0274179	[0.023-0.031] unit increase	Affymetrix [NR] (imputed)	N
605	chr6_mcf_hap5	2680743	2680744	rs12212594	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Psoriasis vulgaris	5,072 European ancestry cases, 478,102 European ancestry controls, 206 East Asian ancestry cases, 172,289 East Asian ancestry controls	NA	6p21.33		rs12212594-C	NR	5E-209		1.4454	[1.35-1.54] unit increase	Affymetrix, Illumina [25844455] (imputed)	N
605	chr6_mcf_hap5	2681263	2681264	rs6908001	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	6p21.33		rs6908001-C	NR	4E-36		0.0278	[0.023-0.032] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
605	chr6_mcf_hap5	2681566	2681567	rs28752871	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	76 Han Chinese ancestry cases, 889 Han Chinese ancestry controls	NA	6p21.33	HLA-B	rs28752871-?	NR	5E-8	(conditional on rs12110437 and rs1264697)			Illumina [3403929] (imputed)	N
605	chr6_mcf_hap5	2682455	2682456	rs9265742	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CPXM1	5,363 Icelandic ancestry individuals	NA	6p21.33		rs9265742-A	0.2045	4E-12		0.162501	[0.12-0.21] unit decrease	Illumina [7506463] (imputed)	N
605	chr6_mcf_hap5	2682572	2682573	rs11968046	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	6p21.33		rs11968046-C	0.772833	5E-11		0.0309702	[0.022-0.04] unit decrease	NR [11722792] (imputed)	N
605	chr6_mcf_hap5	2682572	2682573	rs11968046	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	6p21.33		rs11968046-C	0.772833	2E-10		0.0301683	[0.021-0.04] unit decrease	NR [11722792] (imputed)	N
605	chr6_mcf_hap5	2682572	2682573	rs11968046	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	6p21.33		rs11968046-C	0.772833	2E-10		0.030047	[0.021-0.039] unit decrease	NR [11722792] (imputed)	N
605	chr6_mcf_hap5	2682572	2682573	rs11968046	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Triglyceride levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	6p21.33	HLA-C, HLA-B	rs11968046-?		2E-11		0.0605	[0.043-0.078] unit decrease	Illumina [31500000] (imputed)	N
605	chr6_mcf_hap5	2682648	2682649	rs9265745	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.33		rs9265745-A	0.591	7E-36				Affymetrix [10369434] (imputed)	N
605	chr6_mcf_hap5	2683206	2683207	rs1634774	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.33		rs1634774-A	0.68	1E-34				Affymetrix [10369434] (imputed)	N
605	chr6_mcf_hap5	2683210	2683211	rs28752890	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs28752890-A	NR	2E-12		0.0210684	[0.015-0.027] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_mcf_hap5	2683210	2683211	rs28752890	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs28752890-A	NR	1E-11		0.0202141	[0.014-0.026] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_mcf_hap5	2683210	2683211	rs28752890	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs28752890-A	NR	4E-11		0.0198841	[0.014-0.026] unit increase	Affymetrix [321169] (imputed)	N
605	chr6_mcf_hap5	2683255	2683256	rs114444221	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	6p21.33	HLA-B	rs114444221-?	NR	9E-18		1.133	[1.1-1.16]	Affymetrix [9000000] (imputed)	N
605	chr6_mcf_hap5	2683255	2683256	rs114444221	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	6p21.33	HLA-B	rs114444221-A	NR	9E-16		1.134	[1.1-1.17]	Affymetrix [9000000] (imputed)	N
605	chr6_mcf_hap5	2683811	2683812	rs28752923	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6p21.33		rs28752923-?	NR	4E-10		0.9344	[0.91-0.96]	NR [685523]	N
605	chr6_mcf_hap5	2683854	2683855	rs28752924	34454985	Sliz E	2021-08-26	J Allergy Clin Immunol	Uniting biobank resources reveals novel genetic pathways modulating susceptibility for atopic dermatitis.	Atopic dermatitis	22,474 European ancestry cases, 774,187 European ancestry controls	NA	6p21.33	NR	rs28752924-t	0.6336	5E-11		1.1	[1.07-1.14]	Affymetrix, Illumina [16201029] (imputed)	N
605	chr6_mcf_hap5	2684224	2684225	rs28752936	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs28752936-A	NR	5E-11		0.0187215	[0.013-0.024] unit increase	Affymetrix [321169] (imputed)	N
605	chr6_mcf_hap5	2684328	2684329	rs1634769	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p21.33	NR	rs1634769-A	0.649245	2E-13		0.026251458	[0.019-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
605	chr6_mcf_hap5	2684421	2684422	rs380852	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6p21.33	NR	rs380852-T	0.05472	7E-15		1.107	[1.08-1.135]	Affymetrix [15688218] (imputed)	N
605	chr6_mcf_hap5	2684567	2684568	rs28752949	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs28752949-A	NR	3E-9		0.0170482	[0.011-0.023] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_mcf_hap5	2685563	2685564	rs1631951	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p21.33	NR	rs1631951-T	0.18	4E-12		1.15	[1.11-1.2]	Affymetrix [9886854] (imputed)	N
605	chr6_mcf_hap5	2685563	2685564	rs1631951	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p21.33	NR	rs1631951-T	0.18	6E-17			[NR]	Affymetrix [9886854] (imputed)	N
605	chr6_mcf_hap5	2685563	2685564	rs1631951	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p21.33	NR	rs1631951-T	0.18	2E-15		1.13	[1.1-1.16]	Affymetrix [9886854] (imputed)	N
605	chr6_mcf_hap5	2685563	2685564	rs1631951	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p21.33	NR	rs1631951-T	0.18	3E-16			[NR]	Affymetrix [9886854] (imputed)	N
605	chr6_mcf_hap5	2685563	2685564	rs1631951	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in non-current smokers	16,488 European ancestry cases, 169,688 European ancestry controls	NA	6p21.33	NR	rs1631951-T	0.18	2E-15		1.13	[1.1-1.16]	Affymetrix [9886854] (imputed)	N
605	chr6_mcf_hap5	2685563	2685564	rs1631951	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in never smokers	8,631 European ancestry cases, 120,544 European ancestry controls	NA	6p21.33	NR	rs1631951-T	0.18	3E-12		1.15	[1.11-1.2]	Affymetrix [9886854] (imputed)	N
605	chr6_mcf_hap5	2685563	2685564	rs1631951	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in ever smokers	12,446 European ancestry cases, 59,145 European ancestry controls	NA	6p21.33	NR	rs1631951-T	0.18	4E-7		1.1	[1.06-1.14]	Affymetrix [9886854] (imputed)	N
605	chr6_mcf_hap5	2685653	2685654	rs28367832	32004448	Savage SA	2020-01-30	Am J Hum Genet	Genome-wide Association Study Identifies HLA-DPB1 as a Significant Risk Factor for Severe Aplastic Anemia.	Severe aplastic anemia	359 European ancestry cases, 1,396 European ancestry controls	175 European ancestry cases, 1,059 European ancestry controls	6p21.33	HLA-B	rs28367832-?	NR	7E-9		1.49	[1.22-1.78]	Illumina [688067]	N
605	chr6_mcf_hap5	2686342	2686343	rs1625792	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Help-seeking from a GP	113,262 British ancestry cases, 219,360 British ancestry controls	NA	6p21.33	NR	rs1625792-G	0.853	5E-8		1.0405828	[1.03-1.05]	NR [5276842] (imputed)	N
605	chr6_mcf_hap5	2686342	2686343	rs1625792	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p21.33	NR	rs1625792-?	NR	1E-7		5.298	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
605	chr6_mcf_hap5	2688790	2688791	rs1622406	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	HLA-B, HLA-C, XXbac-BPG248L24.12, MICB, USP8P1, RPL3P2, MIR6891, PPIAP9, XXbac-BPG16N22.5	rs1622406-T	0.03009027	7E-63	(EA, Alpha-2-macroglobulin receptor-associated protein)	2.011	[1.79-2.23] unit increase	Affymetrix [509946]	N
605	chr6_mcf_hap5	2689185	2689186	rs34872474	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.33		rs34872474-G	0.0764200000000001	2E-15		0.042707935	[0.032-0.053] unit decrease	Affymetrix [93095623] (imputed)	N
605	chr6_mcf_hap5	2689374	2689375	rs113021938	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	6p21.33		rs113021938-G	0.027345	2E-14		0.052308656	[0.039-0.066] unit decrease	Affymetrix [93095623] (imputed)	N
605	chr6_mcf_hap5	2690949	2690950	rs2854011	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.33		rs2854011-G	0.848	4E-80				Affymetrix [10369434] (imputed)	N
605	chr6_mcf_hap5	2690949	2690950	rs2854011	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p21.33		rs2854011-G	0.848	4E-55				Affymetrix [10369434] (imputed)	N
605	chr6_mcf_hap5	2691033	2691034	rs28380833	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs28380833-?		8E-9		1.8	[1.47-2.20]	Illumina [7645193] (imputed)	N
605	chr6_mcf_hap5	2691093	2691094	rs9265828	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6p21.33		rs9265828-G	0.569472	1E-13		0.026239738	[0.019-0.033] unit increase	Affymetrix [93095623] (imputed)	N
605	chr6_mcf_hap5	2691114	2691115	rs9265830	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs9265830-A	NR	5E-28		0.0333407	[0.027-0.039] unit decrease	Affymetrix [319769] (imputed)	N
605	chr6_mcf_hap5	2691114	2691115	rs9265830	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs9265830-A	NR	3E-26		0.0322127	[0.026-0.038] unit decrease	Affymetrix [319769] (imputed)	N
605	chr6_mcf_hap5	2691114	2691115	rs9265830	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs9265830-A	NR	1E-8		0.0174211	[0.011-0.023] unit decrease	Affymetrix [321114] (imputed)	N
605	chr6_mcf_hap5	2691114	2691115	rs9265830	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs9265830-A	NR	4E-25		0.0318177	[0.026-0.038] unit decrease	Affymetrix [321169] (imputed)	N
605	chr6_mcf_hap5	2691650	2691651	rs2394976	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to omega-3 fatty acids	115,006 European ancestry individuals	NA	6p21.33		rs2394976-G	0.838358	5E-9		0.0315075	[0.021-0.042] unit decrease	NR [11722792] (imputed)	N
605	chr6_mcf_hap5	2691797	2691798	rs2394977	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-B	rs2394977-G	NR	2E-12		0.0222252	[0.016-0.028] unit increase	Affymetrix [323858] (imputed)	N
605	chr6_mcf_hap5	2691797	2691798	rs2394977	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HLA-B	rs2394977-G	NR	4E-11		0.0207721	[0.015-0.027] unit increase	Affymetrix [127266] (imputed)	N
605	chr6_mcf_hap5	2691797	2691798	rs2394977	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-B	rs2394977-G	NR	6E-20		0.028162	[0.022-0.034] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_mcf_hap5	2691798	2691799	rs2256752	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	6p21.33	intergenic	rs2256752-C	0.3515	2E-13		0.02753249	[0.02-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
605	chr6_mcf_hap5	2692032	2692033	rs4521636	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-B	rs4521636-T	NR	2E-9		0.0186949	[0.013-0.025] unit decrease	Affymetrix [323858] (imputed)	N
605	chr6_mcf_hap5	2692032	2692033	rs4521636	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HLA-B	rs4521636-T	NR	2E-8		0.0174949	[0.011-0.024] unit decrease	Affymetrix [127266] (imputed)	N
605	chr6_mcf_hap5	2692032	2692033	rs4521636	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-B	rs4521636-T	NR	2E-16		0.0251493	[0.019-0.031] unit increase	Affymetrix [323123] (imputed)	N
605	chr6_mcf_hap5	2692065	2692066	rs3134792	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.33	intergenic	rs3134792-C	0.114	6E-72		3.93	[NR]	Illumina [242824]	N
605	chr6_mcf_hap5	2692065	2692066	rs3134792	18364390	Capon F	2008-03-25	Hum Mol Genet	Identification of ZNF313/RNF114 as a novel psoriasis susceptibility gene.	Psoriasis	318 European ancestry cases, 288 European ancestry controls	2,361 European ancestry cases, 1,927 European ancestry controls	6p21.33	HLA-C	rs3134792-?	NR	1E-9				Illumina [~ 408000]	N
605	chr6_mcf_hap5	2692278	2692279	rs2854008	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p21.33	NR	rs2854008-A	0.274988	5E-92				Affymetrix, Illumina [24332387] (imputed)	N
605	chr6_mcf_hap5	2692278	2692279	rs2854008	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	6p21.33	NR	rs2854008-A	0.293344	2E-97		0.04242	[0.038-0.046] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
605	chr6_mcf_hap5	2692769	2692770	rs2394982	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	6p21.33	intergenic	rs2394982-T	0.3056	8E-9		0.02209588	[0.015-0.03] unit increase	Affymetrix [~ 2500000] (imputed)	N
605	chr6_mcf_hap5	2692772	2692773	rs9265878	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs9265878-G	0.732	2E-102				Affymetrix [10369434] (imputed)	N
605	chr6_mcf_hap5	2692959	2692960	rs9265885	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	120,539 East Asian ancestry individuals	NA	6p21.33		rs9265885-C	0.425161	1E-20		0.0356702	[0.028-0.043] unit decrease	Illumina [13474682] (imputed)	N
605	chr6_mcf_hap5	2692997	2692998	rs9265888	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs9265888-T	NR	2E-8		0.0163341	[0.011-0.022] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_mcf_hap5	2693208	2693209	rs9265902	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.33		rs9265902-G	0.721	5E-33				Affymetrix [10369434] (imputed)	N
605	chr6_mcf_hap5	2693208	2693209	rs9265902	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-B	rs9265902-A	NR	1E-9		0.0207461	[0.014-0.027] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_mcf_hap5	2693208	2693209	rs9265902	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs9265902-A	NR	1E-8		0.0181136	[0.012-0.024] unit increase	Affymetrix [321169] (imputed)	N
605	chr6_mcf_hap5	2693341	2693342	rs9265906	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-B	rs9265906-C	NR	5E-8		0.0168982	[0.011-0.023] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_mcf_hap5	2693341	2693342	rs9265906	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs9265906-C	NR	4E-8		0.0157447	[0.01-0.021] unit increase	Affymetrix [321169] (imputed)	N
605	chr6_mcf_hap5	2693805	2693806	rs12175330	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-B	rs12175330-T	NR	1E-13		0.0240282	[0.018-0.03] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_mcf_hap5	2693805	2693806	rs12175330	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs12175330-T	NR	1E-8		0.0170347	[0.011-0.023] unit increase	Affymetrix [321169] (imputed)	N
605	chr6_mcf_hap5	2693845	2693846	rs3016018	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.33		rs3016018-C	NR	2E-14		1.132	[1.097-1.169]	Affymetrix [7846216] (imputed)	N
605	chr6_mcf_hap5	2694385	2694386	rs2507999	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Keratinocyte cancer (MTAG)	at least 18,538 European ancestry cases, at least 340,302 European ancestry controls	NA	6p21.33	HLA-B	rs2507999-A	0.328281	1E-10		1.0638298	[1.04-1.08]	Affymetrix [7600000] (imputed)	N
605	chr6_mcf_hap5	2694772	2694773	rs9265940	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs9265940-G	NR	3E-19		0.0271089	[0.021-0.033] unit increase	Affymetrix [321016] (imputed)	N
605	chr6_mcf_hap5	2694797	2694798	rs9265942	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	6p21.33		rs9265942-C	0.871684	4E-12		0.0455219	[0.033-0.058] unit decrease	NR [11722792] (imputed)	N
605	chr6_mcf_hap5	2694839	2694839	rs150481781	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	6p21.33		rs150481781-AGAGCTTCCCAATTGCT	NR	1E-30		0.0258	[0.021-0.03] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
605	chr6_mcf_hap5	2694959	2694960	rs28771425	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	CX3CL1 levels	21,758 European ancestry individuals	9,173 individuals	6p21.33		rs28771425-A	0.43	5E-19		0.099	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
605	chr6_mcf_hap5	2695079	2695080	rs9265954	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	6p21.33	HLA-B	rs9265954-T	0.0497	2E-18		0.0604	[0.047-0.074] unit increase	Affymetrix [18391927] (imputed)	N
605	chr6_mcf_hap5	2695103	2695104	rs9265956	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.33		rs9265956-T	0.324	2E-45				Affymetrix [10369434] (imputed)	N
605	chr6_mcf_hap5	2695148	2695148	rs111721712	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6p21.33		rs111721712-C	0.530439	2E-12		0.0293352	[0.021-0.037] unit increase	NR [11722792] (imputed)	N
605	chr6_mcf_hap5	2695148	2695148	rs111721712	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6p21.33		rs111721712-C	0.530439	1E-12		0.0294594	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
605	chr6_mcf_hap5	2695148	2695148	rs111721712	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	6p21.33		rs111721712-C	0.534	9E-42		0.15	[0.13-0.17] % increase	Affymetrix [NR] (imputed)	N
605	chr6_mcf_hap5	2695148	2695148	rs111721712	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs111721712-CT	NR	8E-10		0.0174035	[0.012-0.023] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_mcf_hap5	2695148	2695148	rs111721712	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	6p21.33	intergenic	rs111721712-CT	0.4708	1E-26		0.03814722	[0.031-0.045] unit increase	Affymetrix [~ 2500000] (imputed)	N
605	chr6_mcf_hap5	2695253	2695254	rs116685461	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	6p21.33	MHC	rs116685461-G	0.8755	3E-6		1.06	[1.04-1.09]	Affymetrix, Illumina [16900397] (imputed)	N
605	chr6_mcf_hap5	2695253	2695254	rs116685461	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	6p21.33	intergenic	rs116685461-A	0.098	5E-11		0.04047215	[0.028-0.053] unit decrease	Affymetrix [~ 2500000] (imputed)	N
605	chr6_mcf_hap5	2695370	2695371	rs9265965	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium HDL	115,082 European ancestry individuals	NA	6p21.33		rs9265965-T	0.867699	1E-14		0.0453236	[0.034-0.057] unit increase	NR [11722792] (imputed)	N
605	chr6_mcf_hap5	2695389	2695390	rs2523625	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Body fat percentage variance	341,632 European ancestry individuals	NA	6p21.33	HLA-B	rs2523625-?	NR	3E-10				NR [5554549] (imputed)	N
605	chr6_mcf_hap5	2695404	2695405	rs9265968	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	6p21.33	HLA-B	rs9265968-A	0.866272	1E-21		0.0201268	[0.016-0.024] unit decrease	Affymetrix [12370749]	N
605	chr6_mcf_hap5	2696201	2696202	rs116438126	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	6p21.33	intergenic	rs116438126-T	0.0084	6E-18		0.1721088	[0.13-0.21] unit increase	Affymetrix [~ 2500000] (imputed)	N
605	chr6_mcf_hap5	2696312	2696313	rs200291258	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atopic dermatitis	4,296 East Asian ancestry cases, 163,807 East Asian ancestry controls	NA	6p21.33		rs200291258-A	0.179174296	6E-15		0.25656497	[0.19-0.32] unit decrease	Illumina [13428180] (imputed)	N
605	chr6_mcf_hap5	2696501	2696502	rs5014819	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs5014819-T	NR	3E-15		0.0226584	[0.017-0.028] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_mcf_hap5	2696652	2696653	rs2923008	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in diabetes	70,762 European ancestry individuals, 20,967 African American individuals	NA	6p21.33	HLA-B	rs2923008-T	0.106	2E-12		1.017	[0.73-1.3] unit decrease	Affymetrix [NR] (imputed)	N
605	chr6_mcf_hap5	2698357	2698358	rs34213790	28062682	Carr DF	2017-01-05	J Antimicrob Chemother	Genome-wide association study of nevirapine hypersensitivity in a sub-Saharan African HIV-infected population.	Nevirapine-induced hypersensitivity in HIV	151 Sub-saharan African ancestry cases, 182 Sub-saharan African ancestry controls	62 Sub-Saharan African ancestry cases, 60 Sub-Saharan African ancestry controls	6p21.33	HLA-B	rs34213790-A	0.37	7E-7		2.06	[1.55-2.74]	Illumina [14218511] (imputed)	N
605	chr6_mcf_hap5	2698408	2698409	rs9266043	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-B	rs9266043-A	NR	8E-29		0.035895	[0.03-0.042] unit increase	Affymetrix [323123] (imputed)	N
605	chr6_mcf_hap5	2698563	2698564	rs2596505	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p21.33	NR	rs2596505-T	0.1681	1E-8		0.009	[0.0059-0.0121] unit decrease	NR [7666894] (imputed)	N
605	chr6_mcf_hap5	2698750	2698751	rs9391774	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	6p21.33	HLA-B	rs9391774-A	0.070171	8E-17		0.03854895	[0.029-0.048] unit decrease	Affymetrix [93095623] (imputed)	N
605	chr6_mcf_hap5	2698857	2698858	rs73728881	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.33		rs73728881-C	0.408	8E-101				Affymetrix [10369434] (imputed)	N
605	chr6_mcf_hap5	2698934	2698935	rs2442730	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	6p21.33	HLA-B	rs2442730-A	0.723193	2E-43		0.03767923	[0.032-0.043] unit decrease	Affymetrix [93095623] (imputed)	N
605	chr6_mcf_hap5	2698999	2699000	rs9266059	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs9266059-C	NR	7E-15		0.0219789	[0.016-0.028] unit decrease	Affymetrix [319769] (imputed)	N
605	chr6_mcf_hap5	2698999	2699000	rs9266059	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs9266059-C	NR	1E-13		0.0210357	[0.015-0.027] unit decrease	Affymetrix [319769] (imputed)	N
605	chr6_mcf_hap5	2698999	2699000	rs9266059	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs9266059-C	NR	3E-12		0.0197526	[0.014-0.025] unit increase	Affymetrix [321016] (imputed)	N
605	chr6_mcf_hap5	2698999	2699000	rs9266059	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-B	rs9266059-C	NR	2E-12		0.0216682	[0.016-0.028] unit increase	Affymetrix [323123] (imputed)	N
605	chr6_mcf_hap5	2698999	2699000	rs9266059	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs9266059-C	NR	3E-12		0.0199124	[0.014-0.026] unit decrease	Affymetrix [321169] (imputed)	N
605	chr6_mcf_hap5	2699168	2699169	rs9266063	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs9266063-A	NR	1E-9		0.017108	[0.012-0.023] unit increase	Affymetrix [321016] (imputed)	N
605	chr6_mcf_hap5	2699174	2699175	rs34429926	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	6p21.33	HLA-C, HLA-B	rs34429926-?	NR	3E-29		0.04099494	[0.034-0.048] unit increase	Illumina [27896057] (imputed)	N
605	chr6_mcf_hap5	2699266	2699267	rs9405083	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-B	rs9405083-T	NR	5E-10		0.0221393	[0.015-0.029] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_mcf_hap5	2699363	2699364	rs4644106	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs4644106-C	NR	9E-14		0.0259517	[0.019-0.033] unit decrease	Affymetrix [319769] (imputed)	N
605	chr6_mcf_hap5	2699363	2699364	rs4644106	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs4644106-C	NR	9E-14		0.0259699	[0.019-0.033] unit decrease	Affymetrix [319769] (imputed)	N
605	chr6_mcf_hap5	2699363	2699364	rs4644106	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-B	rs4644106-C	NR	5E-10		0.0235741	[0.016-0.031] unit increase	Affymetrix [323123] (imputed)	N
605	chr6_mcf_hap5	2699380	2699381	rs28380929	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pneumonia	7,423 East Asian ancestry cases, 171,303 East Asian ancestry controls	NA	6p21.33		rs28380929-T	0.015924804	5E-22		0.70876914	[0.56-0.85] unit increase	Illumina [13429980] (imputed)	N
605	chr6_mcf_hap5	2699659	2699660	rs9266077	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p21.33	XXbac-BPG248L24.12	rs9266077-G	0.149984	4E-50		0.05959745	[0.052-0.067] unit increase	Affymetrix [93095623] (imputed)	N
605	chr6_mcf_hap5	2699676	2699677	rs2442725	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs2442725-T	NR	5E-8		0.0167286	[0.011-0.023] unit decrease	Affymetrix [319769] (imputed)	N
605	chr6_mcf_hap5	2699676	2699677	rs2442725	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs2442725-T	NR	4E-8		0.0167925	[0.011-0.023] unit decrease	Affymetrix [319769] (imputed)	N
605	chr6_mcf_hap5	2699703	2699704	rs36057735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium HDL	115,082 European ancestry individuals	NA	6p21.33		rs36057735-C	0.80097	9E-14		0.0357792	[0.026-0.045] unit increase	NR [11722792] (imputed)	N
605	chr6_mcf_hap5	2699703	2699704	rs36057735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in HDL	115,082 European ancestry individuals	NA	6p21.33		rs36057735-C	0.80097	8E-14		0.0346386	[0.026-0.044] unit increase	NR [11722792] (imputed)	N
605	chr6_mcf_hap5	2699703	2699704	rs36057735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in HDL	115,082 European ancestry individuals	NA	6p21.33		rs36057735-C	0.80097	2E-13		0.0344232	[0.025-0.044] unit increase	NR [11722792] (imputed)	N
605	chr6_mcf_hap5	2699703	2699704	rs36057735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	6p21.33		rs36057735-C	0.80097	5E-14		0.035387	[0.026-0.045] unit increase	NR [11722792] (imputed)	N
605	chr6_mcf_hap5	2699703	2699704	rs36057735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium HDL particles	115,082 European ancestry individuals	NA	6p21.33		rs36057735-C	0.80097	9E-14		0.0354958	[0.026-0.045] unit increase	NR [11722792] (imputed)	N
605	chr6_mcf_hap5	2699703	2699704	rs36057735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium HDL	115,082 European ancestry individuals	NA	6p21.33		rs36057735-C	0.80097	3E-12		0.0333993	[0.024-0.043] unit increase	NR [11722792] (imputed)	N
605	chr6_mcf_hap5	2699703	2699704	rs36057735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	6p21.33		rs36057735-C	0.80097	9E-13		0.0339999	[0.025-0.043] unit increase	NR [11722792] (imputed)	N
605	chr6_mcf_hap5	2699703	2699704	rs36057735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein A1 levels	115,082 European ancestry individuals	NA	6p21.33		rs36057735-C	0.80097	4E-14		0.0357836	[0.027-0.045] unit increase	NR [11722792] (imputed)	N
605	chr6_mcf_hap5	2699703	2699704	rs36057735	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	6p21.33	HLA-B	rs36057735-C	0.800848	3E-35		0.0304388	[0.026-0.035] unit increase	Affymetrix [NR] (imputed)	N
605	chr6_mcf_hap5	2699703	2699704	rs36057735	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling nervous	373,121 European ancestry individuals	NA	6p21.33	NR	rs36057735-C	0.195566	1E-8		5.69	z score increase	NR [10847151] (imputed)	N
605	chr6_mcf_hap5	2699703	2699704	rs36057735	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.33	C6orf15, CCHCR1, CDSN, HCG22, HCG26, HCG27, HCP5, HLA-B, HLA-C, MICA, MIR6891, POU5F1, PSORS1C1, PSORS1C2, PSORS1C3, TCF19	rs36057735-C		2E-12		1.1	[1.07-1.13]	Affymetrix, Illumina [NR]	N
605	chr6_mcf_hap5	2700088	2700089	rs2507993	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large HDL	115,082 European ancestry individuals	NA	6p21.33		rs2507993-C	0.51967	4E-10		0.0257964	[0.018-0.034] unit increase	NR [11722792] (imputed)	N
605	chr6_mcf_hap5	2700088	2700089	rs2507993	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large HDL	115,082 European ancestry individuals	NA	6p21.33		rs2507993-C	0.51967	2E-9		0.0247775	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
605	chr6_mcf_hap5	2700088	2700089	rs2507993	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large HDL particles	115,082 European ancestry individuals	NA	6p21.33		rs2507993-C	0.51967	9E-10		0.0253075	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
605	chr6_mcf_hap5	2700088	2700089	rs2507993	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	6p21.33		rs2507993-C	0.51967	4E-11		0.0271386	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
605	chr6_mcf_hap5	2700088	2700089	rs2507993	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	6p21.33		rs2507993-C	0.51967	4E-11		0.0272976	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
605	chr6_mcf_hap5	2700288	2700289	rs9266089	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Chickenpox	107,769 European ancestry cases, 15,982 European ancestry controls	NA	6p21.33	HLA-B	rs9266089-G	0.85	1E-10		1.12	[1.1-1.14]	Illumina [at least 560000] (imputed)	N
605	chr6_mcf_hap5	2700317	2700318	rs2442719	26039976	Wei Z	2015-06-17	Sci Rep	Genome-Wide Association Studies of HIV-1 Host Control in Ethnically Diverse Chinese Populations.	HIV-1 viral setpoint	326 Han Chinese ancestry cases, 58 Dai Chinese ancestry cases, 40 Jingpo Chinese ancestry cases, 83 Uygur Chinese ancestry cases, 11 Hui Chinese ancestry cases, 20 East Asian cases	NA	6p21.33	HLA-C, HLA-B	rs2442719-A	0.4161	8E-7	(Han)	0.3298	unit decrease	Illumina [up to 528294]	N
605	chr6_mcf_hap5	2700341	2700342	rs2523616	30850646	Tziotzios C	2019-03-08	Nat Commun	Genome-wide association study in frontal fibrosing alopecia identifies four susceptibility loci including HLA-B*07:02.	Frontal fibrosing alopecia	1,016 European ancestry cases, 4,145 European ancestry controls		6p21.33	HLA-B	rs2523616-T	0.19	8E-119		4.73	[4.15-5.39]	Illumina [~ 8000000] (imputed)	N
605	chr6_mcf_hap5	2700400	2700401	rs117598591	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	20,917 European ancestry cases, 440,906 European ancestry controls, 14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	6p21.33		rs117598591-A	NR	3E-20		0.2416	[0.19-0.29] unit increase	Affymetrix, Illumina [25841367] (imputed)	N
605	chr6_mcf_hap5	2700424	2700425	rs11753309	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Non-albumin protein levels	98,538 Japanese ancestry individuals	NA	6p21.33	HLA-C, HLA-B	rs11753309-?	NR	1E-12		0.07675	[0.056-0.098] unit increase novel	Illumina [6108953] (imputed)	N
605	chr6_mcf_hap5	2700424	2700425	rs11753309	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Albumin-globulin ratio	98,626 Japanese ancestry individuals	NA	6p21.33	HLA-C, HLA-B	rs11753309-?	NR	4E-14		0.08157	[0.06-0.103] unit decrease novel	Illumina [6108953] (imputed)	N
605	chr6_mcf_hap5	2700433	2700434	rs2523614	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Naive CD4-CD8- T cell %T cell	3,427 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs2523614-C	0.26364	6E-9		0.1522	[0.1-0.2] unit decrease	Illumina [18349913] (imputed)	N
605	chr6_mcf_hap5	2700433	2700434	rs2523614	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	6p21.33	HLA-C, MICA	rs2523614-T	0.689	6E-10		0.0237097	[0.016-0.031] unit increase	Illumina [13519193] (imputed)	N
605	chr6_mcf_hap5	2700433	2700434	rs2523614	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.33	HLA-C, MICA	rs2523614-T	0.689	2E-7	(men)	0.0253993	[0.016-0.035] unit increase	Illumina [13520550] (imputed)	N
605	chr6_mcf_hap5	2700441	2700442	rs62396264	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs62396264-G	NR	1E-8		0.042766	[0.028-0.057] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_mcf_hap5	2700628	2700629	rs35735140	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	6p21.33	XXbac-BPG248L24.12	rs35735140-C	0.0632	9E-33		0.08825474	[0.074-0.103] unit increase	Affymetrix [~ 2500000] (imputed)	N
605	chr6_mcf_hap5	2700650	2700650	rs35506574	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs35506574-CTGA	NR	6E-13		0.0203427	[0.015-0.026] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_mcf_hap5	2700650	2700650	rs35506574	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-B	rs35506574-CTGA	NR	6E-10		0.0194754	[0.013-0.026] unit increase	Affymetrix [323858] (imputed)	N
605	chr6_mcf_hap5	2700650	2700650	rs35506574	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs35506574-CTGA	NR	2E-12		0.0198288	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_mcf_hap5	2700650	2700650	rs35506574	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HLA-B	rs35506574-CTGA	NR	6E-9		0.0183276	[0.012-0.024] unit increase	Affymetrix [127266] (imputed)	N
605	chr6_mcf_hap5	2700650	2700650	rs35506574	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs35506574-CTGA	NR	2E-15		0.0226739	[0.017-0.028] unit increase	Affymetrix [321169] (imputed)	N
605	chr6_mcf_hap5	2700990	2700991	rs2596501	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs2596501-T	NR	2E-16		0.0231594	[0.018-0.029] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_mcf_hap5	2700990	2700991	rs2596501	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs2596501-T	NR	3E-15		0.0222583	[0.017-0.028] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_mcf_hap5	2700990	2700991	rs2596501	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs2596501-T	NR	7E-10		0.0173579	[0.012-0.023] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_mcf_hap5	2700990	2700991	rs2596501	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-B	rs2596501-T	NR	5E-11		0.0201678	[0.014-0.026] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_mcf_hap5	2700990	2700991	rs2596501	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs2596501-T	NR	1E-14		0.0219866	[0.016-0.028] unit increase	Affymetrix [321169] (imputed)	N
605	chr6_mcf_hap5	2701046	2701047	rs2596500	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in ever smokers	23,223 European ancestry cases,  16,964 European ancestry controls	NA	6p21.33	HLA-B	rs2596500-C	0.110809826	2E-15		1.2094321	[1.153908741-1.267627282]	Illumina [10439017] (imputed)	N
605	chr6_mcf_hap5	2701046	2701047	rs2596500	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	6p21.33	NR	rs2596500-A	NR	8E-20		1.18	[NR]	Illumina [7158791] (imputed)	N
605	chr6_mcf_hap5	2701106	2701107	rs9266095	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs9266095-G	NR	1E-9		0.0211771	[0.014-0.028] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_mcf_hap5	2701186	2701187	rs12196740	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.33	NR	rs12196740-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
605	chr6_mcf_hap5	2701204	2701205	rs9378247	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-B	rs9378247-A	NR	3E-11		0.0265014	[0.019-0.034] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_mcf_hap5	2701303	2701304	rs2844584	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	6p21.33	NR	rs2844584-?	NR	2E-21	(conditional)			Affymetrix [15688218] (imputed)	N
605	chr6_mcf_hap5	2701436	2701437	rs3177747	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PRSS57	5,358 Icelandic ancestry individuals	NA	6p21.33		rs3177747-A	0.01609	7E-71		1.26085	[1.12-1.4] unit increase	Illumina [7506463] (imputed)	N
605	chr6_mcf_hap5	2703569	2703569	rs5875313	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	6p21.33	HLA-B	rs5875313-?	NR	2E-22		0.039188	[0.031-0.047] unit decrease	Illumina [13520550] (imputed)	N
605	chr6_mcf_hap5	2703997	2703997	rs760342210	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	74,970 East Asian ancestry individuals	NA	6p21.33		rs760342210-GCC	0.376979	5E-8		0.0270505	[0.017-0.037] unit increase	Illumina [13465896] (imputed)	N
605	chr6_mcf_hap5	2704164	2704165	rs4999718	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	6p21.33	HLA-B	rs4999718-A	0.630768	4E-11		0.0144802	[0.01-0.019] unit decrease	Affymetrix [NR] (imputed)	N
605	chr6_mcf_hap5	2705113	2705114	rs9266229	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.33	NR	rs9266229-C	NR	4E-9		0.023	unit decrease	Affymetrix [at least 7091467] (imputed)	N
605	chr6_mcf_hap5	2705113	2705114	rs9266229	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.33	NR	rs9266229-C	0.53	1E-9	(EA)	0.026	unit decrease	Affymetrix [at least 7091467] (imputed)	N
605	chr6_mcf_hap5	2705113	2705114	rs9266229	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.33	NR	rs9266229-C	NR	3E-10		0.027	unit decrease	Affymetrix [at least 7091467] (imputed)	N
605	chr6_mcf_hap5	2705113	2705114	rs9266229	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.33	NR	rs9266229-C	0.53	2E-10	(EA)	0.03	unit decrease	Affymetrix [at least 7091467] (imputed)	N
605	chr6_mcf_hap5	2705113	2705114	rs9266229	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.33	NR	rs9266229-C	NR	1E-6		0.021	unit decrease	Affymetrix [at least 7091467] (imputed)	N
605	chr6_mcf_hap5	2705113	2705114	rs9266229	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.33	NR	rs9266229-C	0.53	1E-6	(EA)	0.023	unit decrease	Affymetrix [at least 7091467] (imputed)	N
605	chr6_mcf_hap5	2705132	2705133	rs9266230	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	6p21.33	NR	rs9266230-G	0.359851	1E-35		0.0263621	[0.022-0.031] unit decrease	NR [NR]	N
605	chr6_mcf_hap5	2705233	2705234	rs114777460	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mumps	31,227 European ancestry cases, 54,153 European ancestry controls	NA	6p21.33	NR	rs114777460-?	NR	4E-6		0.1022	[0.058-0.146] unit decrease	Illumina [at least 560000] (imputed)	N
605	chr6_mcf_hap5	2705311	2705312	rs9266237	31527586	An J	2019-09-16	Nat Commun	Gastroesophageal reflux GWAS identifies risk loci that also associate with subsequent severe esophageal diseases.	Gastroesophageal reflux disease	80,265 European and unknown ancestry cases, 305,011 European and unknown ancestry controls	NA	6p21.33	MICA, HLA-B	rs9266237-C	NR	2E-11		1.0409149	[1.03-1.05]	Affymetrix, Illumina [up to 7600000] (imputed)	N
605	chr6_mcf_hap5	2705482	2705483	rs9266244	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs9266244-G	NR	2E-20		0.0316292	[0.025-0.038] unit decrease	Affymetrix [323858] (imputed)	N
605	chr6_mcf_hap5	2705482	2705483	rs9266244	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	6p21.33	HLA-B	rs9266244-A	0.7077	1E-94		0.0427	[0.039-0.047] unit decrease	Affymetrix [18391927] (imputed)	N
605	chr6_mcf_hap5	2705492	2705493	rs9266245	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs9266245-A	NR	1E-17		0.0293064	[0.023-0.036] unit decrease	Affymetrix [127266] (imputed)	N
605	chr6_mcf_hap5	2705492	2705493	rs9266245	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs9266245-A	NR	4E-9		0.0199304	[0.013-0.027] unit decrease	Affymetrix [323858] (imputed)	N
605	chr6_mcf_hap5	2705492	2705493	rs9266245	30003630	Minica CC	2018-07-13	Addiction	GENOME-WIDE ASSOCIATION META-ANALYSIS OF AGE AT FIRST CANNABIS USE.	Cannabis use (age at onset)	24,953 European ancestry individuals	3,735 European ancestry individuals	6p21.33	NR	rs9266245-A	0.2655	5E-6		0.06	[0.033-0.087] unit decrease	Affymetrix, Illumina, Perlegen [6163759] (imputed)	N
605	chr6_mcf_hap5	2705535	2705536	rs74618856	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs74618856-T	NR	3E-13		0.0210177	[0.015-0.027] unit decrease	Affymetrix [321169] (imputed)	N
605	chr6_mcf_hap5	2705548	2705549	rs9266248	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs9266248-G	NR	5E-11		0.0206568	[0.014-0.027] unit decrease	Affymetrix [323858] (imputed)	N
605	chr6_mcf_hap5	2705548	2705549	rs9266248	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs9266248-G	NR	6E-10		0.0194387	[0.013-0.026] unit decrease	Affymetrix [127266] (imputed)	N
605	chr6_mcf_hap5	2705637	2705638	rs9266253	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs9266253-G	NR	8E-10		0.021803	[0.015-0.029] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_mcf_hap5	2705637	2705638	rs9266253	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs9266253-G	NR	6E-10		0.0219864	[0.015-0.029] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_mcf_hap5	2705641	2705642	rs28694041	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs28694041-G	NR	4E-17		0.0237224	[0.018-0.029] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_mcf_hap5	2705671	2705672	rs9266255	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6p21.33		rs9266255-G	0.51289	7E-12		0.0273638	[0.02-0.035] unit increase	NR [11722792] (imputed)	N
605	chr6_mcf_hap5	2705671	2705672	rs9266255	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs9266255-A	NR	1E-9		0.0189485	[0.013-0.025] unit increase	Affymetrix [323858] (imputed)	N
605	chr6_mcf_hap5	2705671	2705672	rs9266255	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs9266255-A	NR	2E-20		0.0284303	[0.022-0.034] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_mcf_hap5	2705671	2705672	rs9266255	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	6p21.33	HLA-B	rs9266255-A	0.485918	3E-10		0.015893243	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
605	chr6_mcf_hap5	2705676	2705677	rs9266257	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	6p21.33		rs9266257-G	0.332679	3E-14		0.0320363	[0.024-0.04] unit increase	NR [11722792] (imputed)	N
605	chr6_mcf_hap5	2705676	2705677	rs9266257	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	6p21.33		rs9266257-G	0.332679	2E-18		0.036957	[0.029-0.045] unit increase	NR [11722792] (imputed)	N
605	chr6_mcf_hap5	2705676	2705677	rs9266257	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	6p21.33	Intergenic	rs9266257-G	0.2867	3E-10		0.0158	[0.011-0.021] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
605	chr6_mcf_hap5	2705676	2705677	rs9266257	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	6p21.33	Intergenic	rs9266257-C	0.6642	1E-12	(MTAG)	0.0175	[0.013-0.022] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
605	chr6_mcf_hap5	2705871	2705872	rs9266271	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.33		rs9266271-T	0.645	8E-27				Affymetrix [10369434] (imputed)	N
605	chr6_mcf_hap5	2705871	2705872	rs9266271	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs9266271-C	NR	6E-18		0.0254246	[0.02-0.031] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_mcf_hap5	2705871	2705872	rs9266271	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs9266271-C	NR	6E-17		0.0246745	[0.019-0.03] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_mcf_hap5	2705871	2705872	rs9266271	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs9266271-C	NR	1E-12		0.0209457	[0.015-0.027] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_mcf_hap5	2705871	2705872	rs9266271	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs9266271-C	NR	3E-8		0.0177807	[0.011-0.024] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_mcf_hap5	2705871	2705872	rs9266271	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs9266271-C	NR	2E-13		0.0220232	[0.016-0.028] unit increase	Affymetrix [321169] (imputed)	N
605	chr6_mcf_hap5	2705872	2705873	rs62396273	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs62396273-T	NR	1E-15		0.0313037	[0.024-0.039] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_mcf_hap5	2705872	2705873	rs62396273	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs62396273-T	NR	2E-8		0.023758	[0.015-0.032] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_mcf_hap5	2705920	2705921	rs73390208	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	6p21.33		rs73390208-C	0.728652	1E-9		0.028278	[0.019-0.037] unit decrease	NR [11722792] (imputed)	N
605	chr6_mcf_hap5	2705920	2705921	rs73390208	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs73390208-T	NR	2E-8		0.0177817	[0.012-0.024] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_mcf_hap5	2705954	2705955	rs4947311	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hypothyroidism	1,114 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	6p21.33		rs4947311-T	0.840267659	5E-8		0.32545814	[0.21-0.44] unit increase	Illumina [13429045] (imputed)	N
605	chr6_mcf_hap5	2705954	2705955	rs4947311	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs4947311-T	NR	3E-8		0.0173305	[0.011-0.023] unit increase	Affymetrix [127266] (imputed)	N
605	chr6_mcf_hap5	2705954	2705955	rs4947311	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	6p21.33	HLA-B	rs4947311-T	0.491335	1E-26		0.023138076	[0.019-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
605	chr6_mcf_hap5	2705954	2705955	rs4947311	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	6p21.33	HLA-B	rs4947311-T	0.4917	6E-26		0.03719869	[0.03-0.044] unit decrease	Affymetrix [~ 2500000] (imputed)	N
605	chr6_mcf_hap5	2705975	2705975	rs112261624	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p21.33	HLA-B	rs112261624-ATTG	0.126731	3E-11		0.025527913	[0.018-0.033] unit increase	Affymetrix [93095623] (imputed)	N
605	chr6_mcf_hap5	2706011	2706012	rs2596474	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs2596474-G	NR	1E-8		0.0167607	[0.011-0.023] unit increase	Affymetrix [321169] (imputed)	N
605	chr6_mcf_hap5	2706039	2706040	rs9405084	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs9405084-T	NR	1E-13		0.0243425	[0.018-0.031] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_mcf_hap5	2706039	2706040	rs9405084	32488134	Auckland K	2020-06-02	Sci Rep	The Human Leukocyte Antigen Locus and Rheumatic Heart Disease Susceptibility in South Asians and Europeans.	Rheumatic heart disease	510 Northern Indian cases, 344 Northern Indian controls, 162 Fijian Indian cases, 147 Fijian Indian controls	150 European ancestry cases, 1,309 European ancestry controls	6p21.33	HLA-B	rs9405084-?		3E-6		1.36	[1.19-1.55]	Illumina [6925553] (imputed)	N
605	chr6_mcf_hap5	2706039	2706040	rs9405084	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	Composite immunoglobulin trait (IgA/IgM)	14,183 Icelandic ancestry individuals	2,146 Swedish ancestry individuals	6p21.33	HLA-B	rs9405084-T	0.3546	8E-13		0.09	NR SD units decrease	Illumina [21568490] (imputed)	N
605	chr6_mcf_hap5	2706060	2706061	rs9266276	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	6p21.33	NR	rs9266276-?	NR	1E-10		0.0815	[0.057-0.106] unit decrease	Illumina [at least 560000] (imputed)	N
605	chr6_mcf_hap5	2706077	2706078	rs9378248	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6p21.33		rs9378248-G	0.658186	5E-12		0.0289275	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
605	chr6_mcf_hap5	2706077	2706078	rs9378248	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to monounsaturated fatty acids	115,006 European ancestry individuals	NA	6p21.33		rs9378248-G	0.658178	1E-9		0.0253981	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
605	chr6_mcf_hap5	2706077	2706078	rs9378248	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of monounsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	6p21.33		rs9378248-G	0.658178	5E-12		0.0287948	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
605	chr6_mcf_hap5	2706077	2706078	rs9378248	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	6p21.33		rs9378248-G	0.658186	6E-9		0.0251651	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
605	chr6_mcf_hap5	2706077	2706078	rs9378248	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6p21.33		rs9378248-G	0.658186	2E-15		0.0323775	[0.024-0.04] unit increase	NR [11722792] (imputed)	N
605	chr6_mcf_hap5	2706077	2706078	rs9378248	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6p21.33		rs9378248-G	0.658186	3E-12		0.0285178	[0.021-0.036] unit increase	NR [11722792] (imputed)	N
605	chr6_mcf_hap5	2706077	2706078	rs9378248	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6p21.33		rs9378248-G	0.658186	2E-15		0.0327076	[0.025-0.041] unit increase	NR [11722792] (imputed)	N
605	chr6_mcf_hap5	2706077	2706078	rs9378248	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6p21.33		rs9378248-G	0.658186	5E-12		0.028241	[0.02-0.036] unit increase	NR [11722792] (imputed)	N
605	chr6_mcf_hap5	2706077	2706078	rs9378248	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs9378248-A	NR	3E-12		0.0207417	[0.015-0.027] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_mcf_hap5	2706077	2706078	rs9378248	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	6p21.33	HLA-B	rs9378248-G	0.657666	3E-54		0.0324826	[0.028-0.037] unit decrease	Affymetrix [NR] (imputed)	N
605	chr6_mcf_hap5	2706077	2706078	rs9378248	31589552	Lind L	2019-10-07	Metab Syndr Relat Disord	Genome-Wide Association Study of the Metabolic Syndrome in UK Biobank.	Metabolic syndrome	291,107 European ancestry individuals	NA	6p21.33	HLA-B	rs9378248-A	0.339668	2E-10		0.0440684	[0.031-0.058] unit increase	Affymetrix [9463307] (imputed)	N
605	chr6_mcf_hap5	2706077	2706078	rs9378248	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	6p21.33	Intergenic	rs9378248-A	0.386	7E-10	(MTAG)	0.0105	[0.0072-0.0138] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
605	chr6_mcf_hap5	2706077	2706078	rs9378248	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6p21.33	Intergenic	rs9378248-A	0.3659	8E-10	(MTAG)	0.0086	[0.0059-0.0113] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
605	chr6_mcf_hap5	2706711	2706712	rs2395475	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs2395475-G	NR	1E-18		0.0259014	[0.02-0.032] unit decrease	Affymetrix [321169] (imputed)	N
605	chr6_mcf_hap5	2706751	2706752	rs2523591	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p21.33	HLA-B	rs2523591-G	0.58	2E-27		1.14	[1.13-1.16]	Illumina [at least 560000] (imputed)	N
605	chr6_mcf_hap5	2706825	2706826	rs116666910	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	6p21.33	HLA-B	rs116666910-A	0.042838	3E-36		0.07363684	[0.062-0.085] unit increase	Affymetrix [93095623] (imputed)	N
605	chr6_mcf_hap5	2706855	2706856	rs2523590	35215271	Almandil NB	2022-01-27	Pharmaceuticals (Basel)	Integration of Transcriptome and Exome Genotyping Identifies Significant Variants with Autism Spectrum Disorder.	Autism spectrum disorder	70 Arab ancestry cases, 132 Arab ancestry controls	NA	6p21.33	NA	rs2523590-G	0.4059	2E-6		0.2661	[0.1511-0.4689]	Illumina [243345]	N
605	chr6_mcf_hap5	2706855	2706856	rs2523590	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Anxiety	at least 23,606 European ancestry cases, at least 113,351 European ancestry controls	624,615 European ancestry cases, 1,310,854 European ancestry controls	6p21.33	XXbac, BPG248L24.12	rs2523590-T	0.3002	2E-17		0.020998826	[0.015-0.027] unit decrease	NR [9417325] (imputed)	N
605	chr6_mcf_hap5	2706855	2706856	rs2523590	21051598	Pereyra F	2010-11-04	Science	The major genetic determinants of HIV-1 control affect HLA class I peptide presentation.	HIV-1 control	516 European cases, 1,196 European controls, 341 African American cases, 892 African American controls, 117 Hispanic cases, 560 Hispanic controls	NA	6p21.33	HLA-B	rs2523590-C	0.164	2E-13	(AA)	2.4	[NR]	Illumina [1384048] (imputed)	N
605	chr6_mcf_hap5	2706969	2706970	rs2249935	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs2249935-A	NR	2E-11		0.02495	[0.018-0.032] unit decrease	Affymetrix [323858] (imputed)	N
605	chr6_mcf_hap5	2706969	2706970	rs2249935	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs2249935-A	NR	2E-10		0.0236711	[0.016-0.031] unit decrease	Affymetrix [127266] (imputed)	N
605	chr6_mcf_hap5	2706969	2706970	rs2249935	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs2249935-A	NR	6E-9		0.0213066	[0.014-0.028] unit increase	Affymetrix [323123] (imputed)	N
605	chr6_mcf_hap5	2706969	2706970	rs2249935	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	6p21.33	HLA-B	rs2249935-A	0.226813	5E-14		0.022285966	[0.016-0.028] unit increase	Affymetrix [93095623] (imputed)	N
605	chr6_mcf_hap5	2707125	2707126	rs2523589	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2523589-G	0.504575	7E-11		0.0266546	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
605	chr6_mcf_hap5	2707125	2707126	rs2523589	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CDH7	5,355 Icelandic ancestry individuals	NA	6p21.33		rs2523589-G	0.4994	3E-12		0.128281	[0.092-0.164] unit increase	Illumina [7506463] (imputed)	N
605	chr6_mcf_hap5	2707125	2707126	rs2523589	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs2523589-T	NR	4E-15		0.0220143	[0.017-0.028] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_mcf_hap5	2707125	2707126	rs2523589	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs2523589-T	NR	5E-9		0.0182205	[0.012-0.024] unit increase	Affymetrix [323858] (imputed)	N
605	chr6_mcf_hap5	2707125	2707126	rs2523589	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs2523589-T	NR	8E-14		0.0209932	[0.015-0.026] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_mcf_hap5	2707125	2707126	rs2523589	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs2523589-T	NR	3E-10		0.0176998	[0.012-0.023] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_mcf_hap5	2707125	2707126	rs2523589	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs2523589-T	NR	2E-15		0.0225538	[0.017-0.028] unit increase	Affymetrix [321169] (imputed)	N
605	chr6_mcf_hap5	2707125	2707126	rs2523589	33608531	Wu Y	2021-02-19	Nat Commun	GWAS of peptic ulcer disease implicates Helicobacter pylori infection, other gastrointestinal disorders and depression.	Gastroesophageal reflux disease	54,854 European ancestry cases, 401,473 European ancestry controls	NA	6p21.33	NR	rs2523589-G	0.5	5E-13		0.95	[NR]	NR [8546065] (imputed)	N
605	chr6_mcf_hap5	2707125	2707126	rs2523589	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (salicylic acid and derivatives)	61,583 European ancestry cases, 50,427 European ancestry controls	NA	6p21.33	HLA-B	rs2523589-T	0.495166	2E-8		0.044395193	[0.029-0.06] unit increase	Affymetrix [7288503] (imputed)	N
605	chr6_mcf_hap5	2707125	2707126	rs2523589	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.33		rs2523589-T	0.5109049999999999	2E-54		1.0677866	[1.06-1.08]	Affymetrix, Illumina [9851866] (imputed)	N
605	chr6_mcf_hap5	2707191	2707192	rs2523587	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	6p21.33	Intergenic	rs2523587-T	0.3377	3E-8	(MTAG)	0.0105	[0.0068-0.0142] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
605	chr6_mcf_hap5	2707451	2707452	rs1811197	27157822	Hallberg P	2016-05-03	Lancet Diabetes Endocrinol	Genetic variants associated with antithyroid drug-induced agranulocytosis: a genome-wide association study in a European population.	Non-chemotherapy drug induced agranulocytosis	222 European ancestry cases, 12 cases, 5,170 European ancestry controls	NA	6p21.33	NR	rs1811197-?	NR	9E-13	(adjusted for rs114291795)	2.4	[1.89-3.06]	Illumina [9380034] (imputed)	N
605	chr6_mcf_hap5	2707460	2707461	rs116812356	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	6p21.33	HLA-B	rs116812356-C	0.084787	1E-13		0.029957736	[0.022-0.038] unit increase	Affymetrix [93095623] (imputed)	N
605	chr6_mcf_hap5	2707492	2707493	rs9378249	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p21.33	NR	rs9378249-T	0.936677	4E-192				Affymetrix, Illumina [17210439] (imputed)	N
605	chr6_mcf_hap5	2707492	2707493	rs9378249	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	6p21.33	NR	rs9378249-T	0.935134	6E-196		0.116523	[0.11-0.12] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
605	chr6_mcf_hap5	2707492	2707493	rs9378249	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	6p21.33	HLA-B	rs9378249-G	0.0655	1E-53		0.112675	[0.098-0.127] unit decrease	Affymetrix [~ 2500000] (imputed)	N
605	chr6_mcf_hap5	2707492	2707493	rs9378249	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	6p21.33	HLA-B	rs9378249-G	0.0649	7E-35		0.08896168	[0.075-0.103] unit increase	Affymetrix [~ 2500000] (imputed)	N
605	chr6_mcf_hap5	2707492	2707493	rs9378249	21254220	Jiang Y	2011-02-01	Genet Epidemiol	Propensity score-based nonparametric test revealing genetic variants underlying bipolar disorder.	Bipolar disorder	1,868 European ancestry cases, 2,938 European ancestry controls	NA	6p21.33	NR	rs9378249-?	NR	1E-8	(addtive)			Affymetrix [NR]	N
605	chr6_mcf_hap5	2707514	2707515	rs2596477	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p21.33	NR	rs2596477-A	0.124	2E-14	(IFNAR2_of_CD20p)			Illumina [5084123] (imputed)	N
605	chr6_mcf_hap5	2707533	2707534	rs116010992	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in IDL	115,082 European ancestry individuals	NA	6p21.33		rs116010992-G	0.944836	2E-8		0.0511498	[0.033-0.069] unit increase	NR [11722792] (imputed)	N
605	chr6_mcf_hap5	2707533	2707534	rs116010992	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in IDL	115,082 European ancestry individuals	NA	6p21.33		rs116010992-G	0.944836	7E-9		0.0521223	[0.034-0.07] unit increase	NR [11722792] (imputed)	N
605	chr6_mcf_hap5	2707533	2707534	rs116010992	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in IDL	115,082 European ancestry individuals	NA	6p21.33		rs116010992-G	0.944836	7E-9		0.0521034	[0.034-0.07] unit increase	NR [11722792] (imputed)	N
605	chr6_mcf_hap5	2707548	2707549	rs28695590	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs28695590-C	NR	1E-9		0.0254929	[0.017-0.034] unit increase	Affymetrix [323858] (imputed)	N
605	chr6_mcf_hap5	2707548	2707549	rs28695590	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs28695590-C	NR	2E-9		0.0254506	[0.017-0.034] unit increase	Affymetrix [127266] (imputed)	N
605	chr6_mcf_hap5	2707686	2707687	rs2523583	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	6p21.33	XXbac-BPG248L24.12	rs2523583-A	0.7315	5E-7		0.0528	[0.032-0.073] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
605	chr6_mcf_hap5	2707696	2707697	rs7767033	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p21.33		rs7767033-C	0.911783	6E-11		0.0460216	[0.032-0.06] unit decrease	NR [11722792] (imputed)	N
605	chr6_mcf_hap5	2707696	2707697	rs7767033	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p21.33		rs7767033-C	0.911783	3E-10		0.0446058	[0.031-0.058] unit increase	NR [11722792] (imputed)	N
605	chr6_mcf_hap5	2708308	2708309	rs2523579	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs2523579-T	NR	5E-20		0.0268404	[0.021-0.033] unit increase	Affymetrix [321016] (imputed)	N
605	chr6_mcf_hap5	2708308	2708309	rs2523579	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs2523579-T	NR	6E-23		0.0313944	[0.025-0.038] unit increase	Affymetrix [323123] (imputed)	N
605	chr6_mcf_hap5	2708333	2708334	rs2523578	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.33	XXbac-BPG248L24.12	rs2523578-A	0.735	6E-12		0.0561	[0.04-0.072] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
605	chr6_mcf_hap5	2708547	2708548	rs9266289	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.33	NR	rs9266289-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
605	chr6_mcf_hap5	2708677	2708678	rs7772305	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs7772305-G	NR	1E-17		0.0277083	[0.021-0.034] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_mcf_hap5	2708677	2708678	rs7772305	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs7772305-G	NR	4E-10		0.0221253	[0.015-0.029] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_mcf_hap5	2708779	2708780	rs2523573	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	6p21.33	NR	rs2523573-C	0.083499	2E-9		0.077368595	[0.052-0.103] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
605	chr6_mcf_hap5	2708779	2708780	rs2523573	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	6p21.33	NR	rs2523573-C	0.083499	3E-11		0.07532035	[0.053-0.098] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
605	chr6_mcf_hap5	2708820	2708821	rs114029601	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p21.33		rs114029601-?	NR	2E-13		0.0823935	[0.06-0.104] unit increase	Affymetrix [20259828] (imputed)	N
605	chr6_mcf_hap5	2708820	2708821	rs114029601	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs114029601-T	0.024	1E-175	(alpha-2-macroglobulin receptor-associated protein, LRPAP1.3640.14.3)	2.11	[1.97-2.25] unit increase	Affymetrix [10572788] (imputed)	N
605	chr6_mcf_hap5	2708820	2708821	rs114029601	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs114029601-T	0.024	1E-132	(alpha-2-macroglobulin receptor-associated protein, LRPAP1.8829.4.3)	1.88	[1.72-2.04] unit increase	Affymetrix [10572788] (imputed)	N
605	chr6_mcf_hap5	2708883	2708884	rs7772614	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs7772614-A	NR	2E-17		0.0245966	[0.019-0.03] unit decrease	Affymetrix [319769] (imputed)	N
605	chr6_mcf_hap5	2708883	2708884	rs7772614	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs7772614-A	NR	4E-16		0.0235888	[0.018-0.029] unit decrease	Affymetrix [319769] (imputed)	N
605	chr6_mcf_hap5	2708883	2708884	rs7772614	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs7772614-A	NR	9E-15		0.0224619	[0.017-0.028] unit increase	Affymetrix [321016] (imputed)	N
605	chr6_mcf_hap5	2708883	2708884	rs7772614	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs7772614-A	NR	3E-22		0.0306127	[0.024-0.037] unit increase	Affymetrix [323123] (imputed)	N
605	chr6_mcf_hap5	2708883	2708884	rs7772614	32358547	Persyn E	2020-05-01	Nat Commun	Genome-wide association study of MRI markers of cerebral small vessel disease in 42,310 participants.	White matter integrity (mean diffusivity)	17,467 European ancestry individuals	NA	6p21.33	HLA-B, HLA-S	rs7772614-A	0.379354	8E-10		0.272022	[0.19-0.36] unit decrease	Affymetrix [NR] (imputed)	N
605	chr6_mcf_hap5	2708926	2708927	rs2428493	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.33		rs2428493-C	0.59	3E-29				Affymetrix [10369434] (imputed)	N
605	chr6_mcf_hap5	2708926	2708927	rs2428493	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p21.33		rs2428493-C	0.59	2E-11				Affymetrix [10369434] (imputed)	N
605	chr6_mcf_hap5	2708926	2708927	rs2428493	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs2428493-A	NR	1E-8		0.0162701	[0.011-0.022] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_mcf_hap5	2708926	2708927	rs2428493	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs2428493-A	NR	2E-8		0.0160422	[0.01-0.022] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_mcf_hap5	2708926	2708927	rs2428493	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs2428493-A	NR	3E-8		0.0172826	[0.011-0.023] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_mcf_hap5	2708926	2708927	rs2428493	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs2428493-A	NR	4E-8		0.0158728	[0.01-0.022] unit increase	Affymetrix [321169] (imputed)	N
605	chr6_mcf_hap5	2709082	2709083	rs2596544	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs2596544-A	NR	4E-11		0.0250182	[0.018-0.032] unit decrease	Affymetrix [323858] (imputed)	N
605	chr6_mcf_hap5	2709082	2709083	rs2596544	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs2596544-A	NR	2E-10		0.0239529	[0.017-0.031] unit decrease	Affymetrix [127266] (imputed)	N
605	chr6_mcf_hap5	2709082	2709083	rs2596544	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.33	NR	rs2596544-?	NR	7E-14				Affymetrix [~ 8270000] (imputed)	N
605	chr6_mcf_hap5	2709156	2709157	rs2428491	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs2428491-T	NR	7E-9		0.018086	[0.012-0.024] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_mcf_hap5	2709156	2709157	rs2428491	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs2428491-T	NR	3E-8		0.0160184	[0.01-0.022] unit increase	Affymetrix [321169] (imputed)	N
605	chr6_mcf_hap5	2709257	2709258	rs76518703	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.33		rs76518703-G	0.051012999999999975	4E-21		1.0960608	[1.08-1.11]	Affymetrix, Illumina [9851866] (imputed)	N
605	chr6_mcf_hap5	2709269	2709270	rs62396280	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p21.33		rs62396280-G	0.938983	7E-13		0.0589889	[0.043-0.075] unit increase	NR [11722792] (imputed)	N
605	chr6_mcf_hap5	2709269	2709270	rs62396280	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p21.33		rs62396280-G	0.938983	3E-13		0.0597272	[0.044-0.076] unit increase	NR [11722792] (imputed)	N
605	chr6_mcf_hap5	2709269	2709270	rs62396280	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	6p21.33		rs62396280-G	0.938983	5E-13		0.0604292	[0.044-0.077] unit increase	NR [11722792] (imputed)	N
605	chr6_mcf_hap5	2709433	2709434	rs2596547	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MICB	5,339 Icelandic ancestry individuals	NA	6p21.33		rs2596547-T	0.08274	1E-46		0.447301	[0.39-0.51] unit decrease	Illumina [7506463] (imputed)	N
605	chr6_mcf_hap5	2709482	2709483	rs2523571	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Sjogren's syndrome	1,296 European ancestry cases, 482,717 European ancestry controls, 303 East Asian ancestry cases, 175,599 East Asian ancestry controls	NA	6p21.33		rs2523571-A	NR	6E-28		0.709	[0.58-0.84] unit increase	Affymetrix, Illumina [25844664] (imputed)	N
605	chr6_mcf_hap5	2709525	2709526	rs2523570	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs2523570-T	NR	1E-9		0.0207915	[0.014-0.027] unit increase	Affymetrix [321114] (imputed)	N
605	chr6_mcf_hap5	2709525	2709526	rs2523570	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	HLA-B, XXbac-BPG248L24.12, HLA-C, DHFRP2, RNU6-283P	rs2523570-T	0.1732125	3E-22	(EA, MHC class I polypeptide-related sequence A)	0.5698	[0.46-0.68] unit increase	Affymetrix [509946]	N
605	chr6_mcf_hap5	2709806	2709807	rs2523567	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	DHFRP2	rs2523567-G	NR	1E-8		0.019102	[0.013-0.026] unit decrease	Affymetrix [321169] (imputed)	N
605	chr6_mcf_hap5	2710409	2710410	rs2523562	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	6p21.33		rs2523562-C	0.75	5E-23				Affymetrix [10369434] (imputed)	N
605	chr6_mcf_hap5	2710409	2710410	rs2523562	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	6p21.33	DHFRP2	rs2523562-T	0.248438	2E-53		0.043959104	[0.038-0.05] unit decrease	Affymetrix [93095623] (imputed)	N
605	chr6_mcf_hap5	2710409	2710410	rs2523562	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p21.33	NR	rs2523562-T	0.231793	1E-216				Affymetrix, Illumina [23467995] (imputed)	N
605	chr6_mcf_hap5	2710409	2710410	rs2523562	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	6p21.33	NR	rs2523562-T	0.245752	2E-218		0.068474	[0.064-0.073] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
605	chr6_mcf_hap5	2710488	2710489	rs2523561	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	6p21.33		rs2523561-T	0.0841863	4E-21		0.22455621	[0.18-0.27] unit increase	Illumina [13427135] (imputed)	N
605	chr6_mcf_hap5	2710580	2710581	rs9266329	34642315	Ferreiro-Iglesias A	2021-10-12	Nat Commun	Germline determinants of humoral immune response to HPV-16 protect against oropharyngeal cancer.	Human papilloma virus 16 positive oropharyngeal cancer	1,078 European ancestry cases, 5,256 European ancestry controls	NA	6p21.33		rs9266329-A	NR	1E-12		0.6064		Illumina [7574753] (imputed)	N
605	chr6_mcf_hap5	2710761	2710762	rs2523559	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	145,505 East Asian ancestry individuals	NA	6p21.33		rs2523559-A	0.856226	1E-8		0.0270292	[0.018-0.036] unit decrease	Illumina [13477770] (imputed)	N
605	chr6_mcf_hap5	2710829	2710830	rs2523558	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	DHFRP2	rs2523558-G	NR	5E-17		0.0239075	[0.018-0.029] unit decrease	Affymetrix [319769] (imputed)	N
605	chr6_mcf_hap5	2710829	2710830	rs2523558	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	DHFRP2	rs2523558-G	NR	1E-15		0.022827	[0.017-0.028] unit decrease	Affymetrix [319769] (imputed)	N
605	chr6_mcf_hap5	2710829	2710830	rs2523558	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	DHFRP2	rs2523558-G	NR	2E-18		0.025264	[0.02-0.031] unit decrease	Affymetrix [321169] (imputed)	N
605	chr6_mcf_hap5	2711041	2711042	rs2523557	26190474	Dai Y	2015-07-20	Sci Rep	Performance of genetic risk factors in prediction of trichloroethylene induced hypersensitivity syndrome.	Trichloroethylene-induced hypersensitivity syndrome	98 Han Chinese ancestry cases, 98 Han Chinese ancestry trichloroethylene-tolerant controls	Up to 74 Han Chinese ancestry cases, up to 1,661 Han Chinese ancestry trichloroethylene-tolerant controls	6p21.33	HLA-B, MICA	rs2523557-C	0.13	9E-35		7.33	[5.34-10.07]	Illumina [1392644]	N
605	chr6_mcf_hap5	2711284	2711285	rs4959062	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	DHFRP2	rs4959062-G	NR	7E-12		0.0197814	[0.014-0.025] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_mcf_hap5	2711300	2711301	rs9266344	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antithrombotic agents)	67,653 European ancestry cases, 85,986 European ancestry controls, 54,220 East Asian ancestry cases, 124,506 East Asian ancestry controls	NA	6p21.33		rs9266344-C	NR	1E-15		0.0792	[0.06-0.099] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
605	chr6_mcf_hap5	2711481	2711482	rs4959063	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol minus HDL-C levels	115,082 European ancestry individuals	NA	6p21.33		rs4959063-C	0.79261	4E-9		0.0298904	[0.02-0.04] unit decrease	NR [11722792] (imputed)	N
605	chr6_mcf_hap5	2711481	2711482	rs4959063	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Remnant cholesterol (non-HDL, non-LDL -cholesterol)	115,082 European ancestry individuals	NA	6p21.33		rs4959063-C	0.79261	8E-10		0.0312509	[0.021-0.041] unit decrease	NR [11722792] (imputed)	N
605	chr6_mcf_hap5	2711481	2711482	rs4959063	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in IDL	115,082 European ancestry individuals	NA	6p21.33		rs4959063-C	0.79261	2E-8		0.0277784	[0.018-0.037] unit decrease	NR [11722792] (imputed)	N
605	chr6_mcf_hap5	2711481	2711482	rs4959063	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	6p21.33		rs4959063-C	0.79261	1E-9		0.0304695	[0.021-0.04] unit decrease	NR [11722792] (imputed)	N
605	chr6_mcf_hap5	2711481	2711482	rs4959063	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	6p21.33		rs4959063-C	0.79261	2E-10		0.0327736	[0.023-0.043] unit decrease	NR [11722792] (imputed)	N
605	chr6_mcf_hap5	2711481	2711482	rs4959063	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	6p21.33		rs4959063-C	0.79261	2E-10		0.0324692	[0.022-0.042] unit decrease	NR [11722792] (imputed)	N
605	chr6_mcf_hap5	2711481	2711482	rs4959063	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small LDL particles	115,082 European ancestry individuals	NA	6p21.33		rs4959063-C	0.79261	1E-8		0.0290147	[0.019-0.039] unit decrease	NR [11722792] (imputed)	N
605	chr6_mcf_hap5	2711481	2711482	rs4959063	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium LDL particles	115,082 European ancestry individuals	NA	6p21.33		rs4959063-C	0.79261	2E-8		0.0287151	[0.019-0.039] unit decrease	NR [11722792] (imputed)	N
605	chr6_mcf_hap5	2711481	2711482	rs4959063	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large LDL particles	115,082 European ancestry individuals	NA	6p21.33		rs4959063-C	0.79261	6E-10		0.0315332	[0.022-0.042] unit decrease	NR [11722792] (imputed)	N
605	chr6_mcf_hap5	2711481	2711482	rs4959063	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of LDL particles	115,082 European ancestry individuals	NA	6p21.33		rs4959063-C	0.79261	1E-9		0.0312676	[0.021-0.041] unit decrease	NR [11722792] (imputed)	N
605	chr6_mcf_hap5	2711481	2711482	rs4959063	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium VLDL	115,082 European ancestry individuals	NA	6p21.33		rs4959063-C	0.79261	2E-9		0.0304401	[0.021-0.04] unit decrease	NR [11722792] (imputed)	N
605	chr6_mcf_hap5	2711481	2711482	rs4959063	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in VLDL	115,082 European ancestry individuals	NA	6p21.33		rs4959063-C	0.79261	7E-11		0.0332965	[0.023-0.043] unit decrease	NR [11722792] (imputed)	N
605	chr6_mcf_hap5	2711481	2711482	rs4959063	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	6p21.33		rs4959063-C	0.79261	1E-8		0.0281437	[0.018-0.038] unit decrease	NR [11722792] (imputed)	N
605	chr6_mcf_hap5	2711481	2711482	rs4959063	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	6p21.33		rs4959063-C	0.79261	2E-10		0.0323143	[0.022-0.042] unit decrease	NR [11722792] (imputed)	N
605	chr6_mcf_hap5	2711481	2711482	rs4959063	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein B levels	115,082 European ancestry individuals	NA	6p21.33		rs4959063-C	0.79261	1E-9		0.0311161	[0.021-0.041] unit decrease	NR [11722792] (imputed)	N
605	chr6_mcf_hap5	2711612	2711613	rs2523554	33649182	Penova M	2021-03-01	Proc Natl Acad Sci U S A	Genome wide association study of HTLV-1-associated myelopathy/tropical spastic paraparesis in the Japanese population.	HTLV-1 associated myelopathy	731 Japanese ancestry cases, 846 Japanese ancestry controls	NA	6p21.33		rs2523554-C	0.11	3E-8		1.83	[1.48-2.27]	Illumina [126394]	N
605	chr6_mcf_hap5	2711668	2711670	rs9279167	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	6p21.33	DHFRP2	rs9279167-G	0.2829	2E-24		0.04621161	[0.037-0.055] unit decrease	Affymetrix [~ 2500000] (imputed)	N
605	chr6_mcf_hap5	2711735	2711736	rs2523552	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	6p21.33	DHFRP2	rs2523552-T	0.2263	1E-75		0.07846555	[0.07-0.087] unit decrease	Affymetrix [~ 2500000] (imputed)	N
605	chr6_mcf_hap5	2711758	2711759	rs2844583	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	High density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	6p21.33	HLA-B, MICA	rs2844583-?		9E-10		0.0428	[0.029-0.057] unit increase	Illumina [31500000] (imputed)	N
605	chr6_mcf_hap5	2712306	2712307	rs2844582	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	DHFRP2	rs2844582-T	NR	2E-10		0.022422	[0.016-0.029] unit increase	Affymetrix [321169] (imputed)	N
605	chr6_mcf_hap5	2712307	2712308	rs2523548	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6p21.33	DHFRP2	rs2523548-A	0.433296	1E-28		0.029001132	[0.024-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
606	chr6_mcf_hap5	2811905	2811906	rs2284178	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCP5	rs2284178-T	NR	2E-11		0.0209034	[0.015-0.027] unit increase	Affymetrix [323858] (imputed)	N
606	chr6_mcf_hap5	2811905	2811906	rs2284178	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HCP5	rs2284178-T	NR	1E-10		0.0200657	[0.014-0.026] unit increase	Affymetrix [127266] (imputed)	N
606	chr6_mcf_hap5	2811905	2811906	rs2284178	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCP5	rs2284178-T	NR	5E-15		0.0239755	[0.018-0.03] unit decrease	Affymetrix [323123] (imputed)	N
606	chr6_mcf_hap5	2811905	2811906	rs2284178	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	HCP5, XXbac-BPG181B23.6	rs2284178-T	0.4743202	1E-14	(EA, MHC class I polypeptide-related sequence B)	0.3444	[0.26-0.43] unit increase	Affymetrix [509946]	N
606	chr6_mcf_hap5	2813338	2813339	rs3094014	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCP5	rs3094014-A	NR	1E-14		0.0276264	[0.021-0.035] unit decrease	Affymetrix [319769] (imputed)	N
606	chr6_mcf_hap5	2813338	2813339	rs3094014	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HCP5	rs3094014-A	NR	1E-13		0.0265479	[0.02-0.034] unit decrease	Affymetrix [319769] (imputed)	N
606	chr6_mcf_hap5	2813338	2813339	rs3094014	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HCP5	rs3094014-A	NR	1E-14		0.0279942	[0.021-0.035] unit decrease	Affymetrix [321169] (imputed)	N
606	chr6_mcf_hap5	2813346	2813347	rs75640364	30298529	Stanaway IB	2018-10-08	Genet Epidemiol	The eMERGE genotype set of 83,717 subjects imputed to ~40 million variants genome wide and association with the herpes zoster medical record phenotype.	Shingles	3,201 European ancestry cases, 34,960 European ancestry controls, 398 African American cases, 5,922 African American controls, 756 Asian ancestry individuals	NA	6p21.33	HCP5	rs75640364-G	0.91	8E-9	(EA)	1.36	NR	Affymetrix, Illumina [39127678] (imputed)	N
606	chr6_mcf_hap5	2813492	2813493	rs79022003	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	6p21.33	HCP5	rs79022003-C	0.0275	3E-9		0.06434919	[0.043-0.086] unit decrease	Affymetrix [~ 2500000] (imputed)	N
606	chr6_mcf_hap5	2813589	2813590	rs112723370	33105104	Hoi-Yee Li G	2020-12-01	Eur J Endocrinol	Genome-wide meta-analysis reveals novel susceptibility loci for thyrotoxic periodic paralysis.	Thyrotoxic periodic paralysis	319 Chinese ancestry cases, 3,516 Chinese ancestry controls	NA	6p21.33	HCP5	rs112723370-T	0.7932	8E-10		2.569985	2.26932083985339-2.87064883985339	Illumina [7077246] (imputed)	N
606	chr6_mcf_hap5	2813589	2813590	rs112723370	33105104	Hoi-Yee Li G	2020-12-01	Eur J Endocrinol	Genome-wide meta-analysis reveals novel susceptibility loci for thyrotoxic periodic paralysis.	Thyrotoxic periodic paralysis	306 Chinese ancestry male cases, 3,516 Chinese ancestry controls	NA	6p21.33	HCP5	rs112723370-T	0.7925	5E-10		2.634254	1.94219737574364-3.57290860725441	Illumina [7076963] (imputed)	N
606	chr6_mcf_hap5	2813891	2813892	rs3094604	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p21.33	HCP5	rs3094604-G	NR	8E-9		0.0229124	[0.015-0.031] unit decrease	Affymetrix [323858] (imputed)	N
606	chr6_mcf_hap5	2813891	2813892	rs3094604	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Squamous cell lung carcinoma	8,350 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	6p21.33	NR	rs3094604-G	NR	2E-8		0.86	[0.82-0.91]	NR [NR] (imputed)	N
606	chr6_mcf_hap5	2813891	2813892	rs3094604	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6p21.33	HCP5	rs3094604-G	0.184684	2E-12		0.02776865	[0.02-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
606	chr6_mcf_hap5	2813891	2813892	rs3094604	25344690	Feenstra B	2014-10-26	Nat Genet	Common variants associated with general and MMR vaccine-related febrile seizures.	Febrile seizures (MMR vaccine-related)	929 European ancestry cases, 4,118 European ancestry controls	Up to 408 European ancestry cases, Up to 1,645 European ancestry controls	6p21.33	intergenic	rs3094604-A	0.833	1E-7		1.39	[1.23-1.57]	Illumina [8129524] (imputed)	N
606	chr6_mcf_hap5	2814114	2814115	rs2523679	34642315	Ferreiro-Iglesias A	2021-10-12	Nat Commun	Germline determinants of humoral immune response to HPV-16 protect against oropharyngeal cancer.	Human papilloma virus 16 positive oropharyngeal cancer	1,078 European ancestry cases, 5,256 European ancestry controls	NA	6p21.33		rs2523679-T	NR	3E-9		0.5079		Illumina [7574753] (imputed)	N
606	chr6_mcf_hap5	2814146	2814147	rs3094013	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.33	TCF19	rs3094013-G	0.8714999999999999	5E-8	(EA, men)	0.0494	[0.032-0.067] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
606	chr6_mcf_hap5	2814146	2814147	rs3094013	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6p21.33	TCF19	rs3094013-G	0.8733	2E-6	(EA, men)	0.0486	[0.028-0.069] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
606	chr6_mcf_hap5	2814146	2814147	rs3094013	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.33	TCF19	rs3094013-?	0.8714999999999999	8E-7	(EA, men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
606	chr6_mcf_hap5	2814146	2814147	rs3094013	26362759	Rothwell S	2015-09-11	Ann Rheum Dis	Dense genotyping of immune-related loci in idiopathic inflammatory myopathies confirms HLA alleles as the strongest genetic risk factor and suggests different genetic background for major clinical subgroups.	Polymyositis	931 European ancestry cases, 15,651 European ancestry controls		6p21.33	HLA	rs3094013-T	0.12	6E-76		2.97	[2.64-3.33]	Illumina [90536]	N
606	chr6_mcf_hap5	2814581	2814582	rs2523677	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	6p21.33	HCP5	rs2523677-T	0.079494	1E-12		0.033747673	[0.024-0.043] unit increase	Affymetrix [93095623] (imputed)	N
606	chr6_mcf_hap5	2815649	2815650	rs4713466	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCP5	rs4713466-T	NR	4E-8		0.0226314	[0.015-0.031] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_mcf_hap5	2815649	2815650	rs4713466	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HCP5	rs4713466-T	NR	3E-8		0.0227762	[0.015-0.031] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_mcf_hap5	2815812	2815813	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	VLDL cholesterol levels	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	3E-11		0.0291124	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
606	chr6_mcf_hap5	2815812	2815813	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very small VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	2E-19		0.0385398	[0.03-0.047] unit decrease	NR [11722792] (imputed)	N
606	chr6_mcf_hap5	2815812	2815813	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large LDL	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	2E-16		0.0354641	[0.027-0.044] unit decrease	NR [11722792] (imputed)	N
606	chr6_mcf_hap5	2815812	2815813	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in LDL	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	7E-17		0.035861	[0.027-0.044] unit decrease	NR [11722792] (imputed)	N
606	chr6_mcf_hap5	2815812	2815813	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in IDL	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	4E-18		0.0372214	[0.029-0.046] unit decrease	NR [11722792] (imputed)	N
606	chr6_mcf_hap5	2815812	2815813	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very small VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	6E-11		0.0281413	[0.02-0.037] unit decrease	NR [11722792] (imputed)	N
606	chr6_mcf_hap5	2815812	2815813	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	8E-13		0.0302194	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
606	chr6_mcf_hap5	2815812	2815813	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	1E-15		0.0347493	[0.026-0.043] unit decrease	NR [11722792] (imputed)	N
606	chr6_mcf_hap5	2815812	2815813	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	2E-12		0.0299561	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
606	chr6_mcf_hap5	2815812	2815813	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	2E-10		0.026718	[0.018-0.035] unit decrease	NR [11722792] (imputed)	N
606	chr6_mcf_hap5	2815812	2815813	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	6E-14		0.0322744	[0.024-0.041] unit decrease	NR [11722792] (imputed)	N
606	chr6_mcf_hap5	2815812	2815813	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very small VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	8E-12		0.0294512	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
606	chr6_mcf_hap5	2815812	2815813	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	2E-12		0.0299045	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
606	chr6_mcf_hap5	2815812	2815813	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	2E-12		0.0308819	[0.022-0.039] unit decrease	NR [11722792] (imputed)	N
606	chr6_mcf_hap5	2815812	2815813	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	3E-13		0.0308617	[0.023-0.039] unit decrease	NR [11722792] (imputed)	N
606	chr6_mcf_hap5	2815812	2815813	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	7E-14		0.0323789	[0.024-0.041] unit decrease	NR [11722792] (imputed)	N
606	chr6_mcf_hap5	2815812	2815813	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	1E-12		0.03014	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
606	chr6_mcf_hap5	2815812	2815813	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	4E-13		0.0307696	[0.022-0.039] unit decrease	NR [11722792] (imputed)	N
606	chr6_mcf_hap5	2815812	2815813	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	8E-13		0.0311502	[0.023-0.04] unit decrease	NR [11722792] (imputed)	N
606	chr6_mcf_hap5	2815812	2815813	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very small VLDL particles	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	9E-10		0.0264832	[0.018-0.035] unit decrease	NR [11722792] (imputed)	N
606	chr6_mcf_hap5	2815812	2815813	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large VLDL particles	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	8E-13		0.0301814	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
606	chr6_mcf_hap5	2815812	2815813	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small VLDL particles	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	1E-15		0.0345389	[0.026-0.043] unit decrease	NR [11722792] (imputed)	N
606	chr6_mcf_hap5	2815812	2815813	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large VLDL particles	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	7E-13		0.0303598	[0.022-0.039] unit decrease	NR [11722792] (imputed)	N
606	chr6_mcf_hap5	2815812	2815813	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of chylomicrons and extremely large VLDL particles	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	8E-11		0.0273614	[0.019-0.036] unit decrease	NR [11722792] (imputed)	N
606	chr6_mcf_hap5	2815812	2815813	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of VLDL particles	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	2E-13		0.0320006	[0.023-0.041] unit decrease	NR [11722792] (imputed)	N
606	chr6_mcf_hap5	2815812	2815813	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	4E-9		0.0250628	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
606	chr6_mcf_hap5	2815812	2815813	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	6E-12		0.0296805	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
606	chr6_mcf_hap5	2815812	2815813	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	1E-11		0.0297703	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
606	chr6_mcf_hap5	2815812	2815813	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	2E-12		0.030433	[0.022-0.039] unit decrease	NR [11722792] (imputed)	N
606	chr6_mcf_hap5	2815812	2815813	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	5E-12		0.0292494	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
606	chr6_mcf_hap5	2815812	2815813	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	1E-12		0.0304211	[0.022-0.039] unit decrease	NR [11722792] (imputed)	N
606	chr6_mcf_hap5	2815812	2815813	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	7E-11		0.0286405	[0.02-0.037] unit decrease	NR [11722792] (imputed)	N
606	chr6_mcf_hap5	2815812	2815813	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	6E-13		0.0309269	[0.023-0.039] unit decrease	NR [11722792] (imputed)	N
606	chr6_mcf_hap5	2815812	2815813	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	2E-12		0.0297343	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
606	chr6_mcf_hap5	2816244	2816245	rs77523206	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	6p21.33	NR	rs77523206-?	NR	1E-93		20.529	NR z score increase	Illumina [at least 830937] (imputed)	N
606	chr6_mcf_hap5	2816774	2816775	rs2523673	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.33		rs2523673-T	0.539	1E-32				Affymetrix [10369434] (imputed)	N
606	chr6_mcf_hap5	2816774	2816775	rs2523673	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.33		rs2523673-T	0.539	4E-28				Affymetrix [10369434] (imputed)	N
606	chr6_mcf_hap5	2816774	2816775	rs2523673	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	6p21.33	HCP5	rs2523673-C	0.4598	2E-30		0.04180668	[0.035-0.049] unit decrease	Affymetrix [~ 2500000] (imputed)	N
606	chr6_mcf_hap5	2817472	2817475	rs139043330	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	133,336 East Asian ancestry individuals	NA	6p21.33		rs139043330-G	0.154197	1E-10		0.0313843	[0.022-0.041] unit decrease	Illumina [13476509] (imputed)	N
606	chr6_mcf_hap5	2818022	2818023	rs2596450	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	6p21.33	NR	rs2596450-?	NR	8E-6		0.0425	[0.024-0.061] unit decrease	Illumina [at least 560000] (imputed)	N
606	chr6_mcf_hap5	2818147	2818148	rs2244839	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCP5	rs2244839-A	NR	8E-12		0.0228771	[0.016-0.029] unit decrease	Affymetrix [321016] (imputed)	N
606	chr6_mcf_hap5	2818169	2818170	rs2596449	26151496	Chen PL	2015-07-07	Nat Commun	Genetic determinants of antithyroid drug-induced agranulocytosis by human leukocyte antigen genotyping and genome-wide association study.	Thionamide-induced agranulocytosis in Graves' disease	21 East Asian ancestry cases with agranulocytosis, 662 East Asian ancestry cases without agranulocytosis	21 East Asian ancestry cases with agranulocytosis, 546 East Asian ancestry cases without agranulocytosis	6p21.33	HLA	rs2596449-A	0.047	2E-13	(trend)	6.35	[3.68-10.96] (allelic)	Affymetrix [522980]	N
606	chr6_mcf_hap5	2819438	2819439	rs9688839	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MICB	5,365 Icelandic ancestry individuals	NA	6p21.33		rs9688839-G	0.06745	2E-66		0.633901	[0.56-0.71] unit increase	Illumina [7506463] (imputed)	N
606	chr6_mcf_hap5	2819625	2819626	rs3094603	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	6p21.33		rs3094603-G	0.704515	7E-9		0.0251235	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
606	chr6_mcf_hap5	2819793	2819794	rs14597	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	6p21.33	NR	rs14597-A	0.433533	3E-9		0.0405708	[0.027-0.054] unit increase	Affymetrix [17914406] (imputed)	N
606	chr6_mcf_hap5	2819861	2819862	rs1055569	25897833	Thompson AG	2015-04-21	Transl Psychiatry	Genome-wide association study of behavioural and psychiatric features in human prion disease.	Psychotic symptoms and prion disease	Up to 170 cases, 5,200 controls	NA	6p21.33	HCG26	rs1055569-?	0.291	3E-6		2.36	[1.66-3.35]	Illumina [518938]	N
606	chr6_mcf_hap5	2820088	2820089	rs2523659	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large HDL	115,082 European ancestry individuals	NA	6p21.33		rs2523659-T	0.698051	3E-11		0.0290837	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
606	chr6_mcf_hap5	2820088	2820089	rs2523659	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCP5	rs2523659-G	NR	4E-8		0.0169129	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_mcf_hap5	2820430	2820431	rs3828889	30833571	Wiberg A	2019-03-04	Nat Commun	A genome-wide association analysis identifies 16 novel susceptibility loci for carpal tunnel syndrome.	Carpal tunnel syndrome	12,312 European ancestry cases, 389,344 European ancestry controls	NA	6p21.33	Intergenic	rs3828889-C	0.732	2E-8		1.09	[1.06-1.12]	Affymetrix [84000000] (imputed)	N
606	chr6_mcf_hap5	2820448	2820449	rs3828890	22797727	Okada Y	2012-07-15	Nat Genet	Meta-analysis identifies multiple loci associated with kidney function-related traits in east Asian populations.	Renal function-related traits (sCR)	42,257 East Asian, South Asian, and South East Asian ancestry individuals	19,662 East Asian ancestry individuals	6p21.33	MHC	rs3828890-G	0.11	3E-9		0.0069	[0.0046-0.0092] mg/dl increase	Affymetrix, Illumina [2353587] (imputed)	N
606	chr6_mcf_hap5	2820448	2820449	rs3828890	22797727	Okada Y	2012-07-15	Nat Genet	Meta-analysis identifies multiple loci associated with kidney function-related traits in east Asian populations.	Renal function-related traits (eGRFcrea)	42,451 East Asian, South Asian, and South East Asian ancestry individuals	19,636 East Asian ancestry individuals	6p21.33	MHC	rs3828890-G	0.11	1E-9		0.0079	[0.0054-0.0105] ml/min/1.73m2 decrease	Affymetrix, Illumina [2353587] (imputed)	N
606	chr6_mcf_hap5	2820748	2820748	rs9281492	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.33	HCP5	rs9281492-A	0.7482	1E-6		0.041	[0.024-0.058] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
606	chr6_mcf_hap5	2821128	2821129	rs4413654	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCP5	rs4413654-A	NR	2E-9		0.0202622	[0.014-0.027] unit decrease	Affymetrix [321016] (imputed)	N
606	chr6_mcf_hap5	2821462	2821463	rs145038238	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Treatment or medication use - levothyroxine sodium (UKB data field 20003_1141191044)	18,688 European ancestry cases, 437,588 European ancestry controls	NA	6p21.33		rs145038238-A	0.003929	1E-9		0.54	[0.36-0.72] unit increase	NR [11842647] (imputed)	N
606	chr6_mcf_hap5	2822510	2822511	rs2844503	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCP5	rs2844503-A	NR	2E-11		0.0191544	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_mcf_hap5	2822510	2822511	rs2844503	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HCP5	rs2844503-A	NR	6E-11		0.0185817	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_mcf_hap5	2822510	2822511	rs2844503	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCP5	rs2844503-A	NR	2E-11		0.0189754	[0.013-0.025] unit decrease	Affymetrix [321016] (imputed)	N
606	chr6_mcf_hap5	2822510	2822511	rs2844503	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCP5	rs2844503-A	NR	4E-10		0.0193246	[0.013-0.025] unit decrease	Affymetrix [323123] (imputed)	N
606	chr6_mcf_hap5	2822510	2822511	rs2844503	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HCP5	rs2844503-A	NR	3E-10		0.018057	[0.012-0.024] unit increase	Affymetrix [321169] (imputed)	N
606	chr6_mcf_hap5	2822561	2822562	rs3131643	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Creatinine levels	110,051 European ancestry individuals	NA	6p21.33		rs3131643-G	0.840442	8E-10		0.0296468	[0.02-0.039] unit decrease	NR [11722792] (imputed)	N
606	chr6_mcf_hap5	2822561	2822562	rs3131643	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.33		rs3131643-G	0.84	2E-102				Affymetrix [10369434] (imputed)	N
606	chr6_mcf_hap5	2822561	2822562	rs3131643	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p21.33	HCP5	rs3131643-A	0.158883	4E-12		0.027895512	[0.02-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
606	chr6_mcf_hap5	2822561	2822562	rs3131643	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.33	HCP5	rs3131643-A	0.15885	1E-15		0.04733108	[0.036-0.059] unit decrease	Affymetrix [93095623] (imputed)	N
606	chr6_mcf_hap5	2822561	2822562	rs3131643	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count (basophil)	171,846 European ancestry individuals	NA	6p21.33	HCP5	rs3131643-A	0.1597	2E-24		0.04853096	[0.039-0.058] unit decrease	Affymetrix [~ 2500000] (imputed)	N
606	chr6_mcf_hap5	2822561	2822562	rs3131643	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	6p21.33	HCP5	rs3131643-A	0.1597	4E-107		0.1077558	[0.098-0.117] unit decrease	Affymetrix [~ 2500000] (imputed)	N
606	chr6_mcf_hap5	2822691	2822692	rs79501286	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Chickenpox	107,769 European ancestry cases, 15,982 European ancestry controls	NA	6p21.33	NR	rs79501286-?	NR	2E-9		0.13	[0.088-0.172] unit increase	Illumina [at least 560000] (imputed)	N
606	chr6_mcf_hap5	2824383	2824384	rs2523655	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	150,545 East Asian ancestry individuals	NA	6p21.33		rs2523655-G	0.870322	1E-8		0.0292114	[0.019-0.039] unit decrease	Illumina [13478866] (imputed)	N
606	chr6_mcf_hap5	2825293	2825294	rs2523653	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Angina pectoris	14,007 East Asian ancestry cases, 145,158 East Asian ancestry controls	NA	6p21.33		rs2523653-G	0.805782921	3E-12		0.12027492	[0.087-0.154] unit decrease	Illumina [13426705] (imputed)	N
606	chr6_mcf_hap5	2825343	2825344	rs17206973	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p21.33	NR	rs17206973-?	NR	2E-22		0.2134	[0.17-0.26] unit decrease	Illumina [at least 560000] (imputed)	N
606	chr6_mcf_hap5	2826249	2826250	rs2248372	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCP5	rs2248372-A	NR	4E-8		0.0185638	[0.012-0.025] unit increase	Affymetrix [323858] (imputed)	N
606	chr6_mcf_hap5	2826249	2826250	rs2248372	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	HCP5	rs2248372-A	0.3318273	1E-19	(MHC class I polypeptide-related sequence B)	0.4168	[0.33-0.5] unit increase	Affymetrix [509946]	N
606	chr6_mcf_hap5	2826579	2826580	rs2248462	22286212	Urayama KY	2012-01-27	J Natl Cancer Inst	Genome-wide association study of classical Hodgkin lymphoma and Epstein-Barr virus status-defined subgroups.	Hodgkin's lymphoma	1,200 European ancestry cases, 6,417 European ancestry controls	563 European ancestry cases, 613 European ancestry controls	6p21.33	MICB	rs2248462-?	NR	7E-16	(Total cHL)	1.64	[1.45-1.85]	Illumina [502514]	N
606	chr6_mcf_hap5	2827371	2827372	rs2516513	32376702	Shen J	2020-05-06	mSphere	Genetic Association Reveals Protection against Recurrence of Clostridium difficile Infection with Bezlotoxumab Treatment.	Recurrence of Clostridium difficile infection x bezlotuxumab treatment interaction (2df test)	704 European, African American and Asian ancestry individuals	NA	6p21.33	NR	rs2516513-T	0.41	3E-8				Affymetrix [7570264] (imputed)	N
606	chr6_mcf_hap5	2828435	2828436	rs116518228	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCP5	rs116518228-T	NR	2E-8		0.032993	[0.022-0.044] unit decrease	Affymetrix [323123] (imputed)	N
606	chr6_mcf_hap5	2828645	2828646	rs3749946	24837172	Juyal G	2014-05-16	Gut	Genome-wide association scan in north Indians reveals three novel HLA-independent risk loci for ulcerative colitis.	Ulcerative colitis	603 North Indian ancestry cases, 622 North Indian ancestry controls	733 North Indian ancestry cases, 1,148 North Indian ancestry controls	6p21.33	3.8-1, HCG26	rs3749946-A	0.07	2E-15		1.97	[1.66-2.33]	Illumina [480391]	N
606	chr6_mcf_hap5	2828759	2828760	rs3099844	22399527	Kristiansson K	2012-03-07	Circ Cardiovasc Genet	Genome-wide screen for metabolic syndrome susceptibility Loci reveals strong lipid gene contribution but no evidence for common genetic basis for clustering of metabolic syndrome traits.	Metabolic syndrome	2,637 European ancestry cases, 7,927 European ancestry controls	NA	6p21.33	HCG26, MICB	rs3099844-A	0.08	2E-8	(HDL)	0.15	[NR] mmol/l decrease	Illumina [1257079] (imputed)	N
606	chr6_mcf_hap5	2828759	2828760	rs3099844	20662065	Clancy RM	2010-07-26	Arthritis Rheum	Identification of candidate loci at 6p21 and 21q22 in a genome-wide association study of cardiac manifestations of neonatal lupus.	Neonatal lupus	116 European ancestry cases, 3,351 European ancestry controls	NA	6p21.33	NFKBIL1, LTA, AIF1, TNF, LTB	rs3099844-?	0.11	5E-10		3.34	[2.29-4.89]	Illumina [346110]	N
606	chr6_mcf_hap5	2828805	2828806	rs2523650	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	6p21.33	HCG26, MICB, HCP5, MCCD1, ATP6V1G2-DDX39B, DDX39B, SNORD117, SNORD84, DDX39B-AS1, ATP6V1G2, NFKBIL1, MICA, LTA, TNF, LTB, LST1, NCR3, HLA-B, AIF1, PRRC2A, SNORA38, MIR6832, BAG6, APOM, C6orf47, GPANK1, CSNK2B, LY6G5B, LY6G5C, ABHD16A, MIR4646, LY6G6F, LY6G6E, LY6G6D, LY6G6C, C6orf25, DDAH2	rs2523650-?		5E-7	(recessive)	0.167	[0.1-0.23] unit decrease	Illumina [1492601] (imputed)	N
606	chr6_mcf_hap5	2828805	2828806	rs2523650	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	6p21.33	HCG26, MICB, HCP5, MCCD1, ATP6V1G2-DDX39B, DDX39B, SNORD117, SNORD84, DDX39B-AS1, ATP6V1G2, NFKBIL1, MICA, LTA, TNF, LTB, LST1, NCR3, HLA-B, AIF1, PRRC2A, SNORA38, MIR6832, BAG6, APOM, C6orf47, GPANK1, CSNK2B, LY6G5B, LY6G5C, ABHD16A, MIR4646, LY6G6F, LY6G6E, LY6G6D, LY6G6C, C6orf25, DDAH2	rs2523650-?		3E-6	(additive)	0.121	[0.07-0.172] unit decrease	Illumina [1492601] (imputed)	N
606	chr6_mcf_hap5	2828805	2828806	rs2523650	31189108	O'Connor D	2019-06-01	Cell Rep	Common Genetic Variations Associated with the Persistence of Immunity following Childhood Immunization.	Tetanus toxoid IgG concentrations post childhood immunization	549 European ancestry children and adolescents	1,303 European ancestry children and adolescents	6p21.33	NR	rs2523650-?	NR	1E-9		0.1117	[0.076-0.147] unit increase	Illumina [~ 6700000] (imputed)	N
606	chr6_mcf_hap5	2829401	2829402	rs2516420	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	6p21.33	MHC	rs2516420-C	0.9263	1E-7		1.1	[1.06-1.13]	Affymetrix, Illumina [16900397] (imputed)	N
606	chr6_mcf_hap5	2829423	2829424	rs2523648	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCP5	rs2523648-A	NR	4E-8		0.0208118	[0.013-0.028] unit increase	Affymetrix [323858] (imputed)	N
606	chr6_mcf_hap5	2829423	2829424	rs2523648	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HCP5	rs2523648-A	NR	5E-8		0.0207421	[0.013-0.028] unit increase	Affymetrix [127266] (imputed)	N
606	chr6_mcf_hap5	2830497	2830498	rs2905752	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	6p21.33	Intergenic	rs2905752-G	NR	2E-7		0.0193848	[0.012-0.027] unit decrease	Illumina [13519193] (imputed)	N
606	chr6_mcf_hap5	2830696	2830697	rs2523710	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	Intergenic	rs2523710-A	0.2052314	6E-15	(EA, MHC class I polypeptide-related sequence A)	0.4247	[0.32-0.53] unit decrease	Affymetrix [509946]	N
606	chr6_mcf_hap5	2831634	2831635	rs2904602	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCP5	rs2904602-A	NR	1E-9		0.0273048	[0.019-0.036] unit decrease	Affymetrix [321016] (imputed)	N
606	chr6_mcf_hap5	2831827	2831828	rs143439747	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs143439747-A	0.049	9E-14	(Natural cytotoxicity triggering receptor 3, NCR3.3003.29.2)	0.42	[0.3-0.54] unit decrease	Affymetrix [10572788] (imputed)	N
606	chr6_mcf_hap5	2831827	2831828	rs143439747	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mumps	31,227 European ancestry cases, 54,153 European ancestry controls	NA	6p21.33	NR	rs143439747-?	NR	4E-6		0.1204	[0.069-0.171] unit increase	Illumina [at least 560000] (imputed)	N
606	chr6_mcf_hap5	2831891	2831892	rs28525417	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCP5	rs28525417-G	NR	3E-8		0.0185461	[0.012-0.025] unit decrease	Affymetrix [323123] (imputed)	N
606	chr6_mcf_hap5	2831891	2831892	rs28525417	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HCP5	rs28525417-G	NR	4E-8		0.0171664	[0.011-0.023] unit increase	Affymetrix [321169] (imputed)	N
606	chr6_mcf_hap5	2832080	2832081	rs2905741	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (underestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	6p21.33	NR	rs2905741-?	NR	1E-8		5.689	NR z score increase	Illumina [at least 830937] (imputed)	N
606	chr6_mcf_hap5	2832198	2832202	rs144801046	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls, 20,367 East Asian ancestry cases, 158,359 East Asian ancestry controls	NA	6p21.33		rs144801046-C	NR	2E-13		0.1571	[0.12-0.2] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
606	chr6_mcf_hap5	2832198	2832202	rs144801046	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (beta blocking agents)	20,367 East Asian ancestry cases, 158,359 East Asian ancestry controls	NA	6p21.33		rs144801046-C	0.072674614	2E-13		0.15705363	[0.12-0.2] unit increase	Illumina [13134967] (imputed)	N
606	chr6_mcf_hap5	2832220	2832221	rs2904789	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.33	NR	rs2904789-?	NR	5E-11				Affymetrix [~ 8270000] (imputed)	N
606	chr6_mcf_hap5	2833078	2833079	rs2905736	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MICB	5,365 Icelandic ancestry individuals	NA	6p21.33		rs2905736-A	0.0328	1E-193		1.45308	[1.36-1.55] unit increase	Illumina [7506463] (imputed)	N
606	chr6_mcf_hap5	2833078	2833079	rs2905736	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	MICB, LST1, HCP5, XXbac-BPG181B23.6, XXbac-BPG16N22.5, DDX39B, ATP6V1G2, TNF, NCR3, PRRC2A, CSNK2B, GPANK1, LY6G5B, CLIC1, MSH5, VARS, Y_RNA, PPIAP9, RPL15P4, MCCD1, SNORD117, ATP6V1G2-DDX39B, AL662801.1, DDX39B-AS1, SNORD84, NFKBIL1, LTB, LTA, SNORA38, BAG6, CSNK2B-LY6G5B--991, C6orf47-AS1, C6orf47, MSH5-SAPCD1	rs2905736-A	0.03109328	2E-27	(EA, MHC class I polypeptide-related sequence B)	1.367	[1.13-1.61] unit increase	Affymetrix [509946]	N
606	chr6_mcf_hap5	2833335	2833336	rs2428501	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.33	Intergenic	rs2428501-G	NR	1E-6	(men)	0.0231006	[0.014-0.032] unit decrease	Illumina [13520550] (imputed)	N
606	chr6_mcf_hap5	2834150	2834151	rs144596166	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MICB	rs144596166-G	NR	4E-8		0.0340564	[0.022-0.046] unit decrease	Affymetrix [321016] (imputed)	N
606	chr6_mcf_hap5	2835314	2835315	rs9267235	31235810	Fung K	2019-06-24	Sci Rep	Genome-wide association study identifies loci for arterial stiffness index in 127,121 UK Biobank participants.	Arterial stiffness index	127,121 European ancestry individuals	NA	6p21.33	MICB	rs9267235-T	0.954	7E-6		0.044	[0.024-0.064] unit increase	Affymetrix [~ 10446505] (imputed)	N
606	chr6_mcf_hap5	2835897	2835898	rs28664826	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs28664826-A	0.396	1E-46	(MHC class I polypeptide-related sequence B, MICB.5102.55.3)	0.38	[0.32-0.44] unit decrease	Affymetrix [10572788] (imputed)	N
606	chr6_mcf_hap5	2836051	2836052	rs9267257	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p21.33	NR	rs9267257-?	NR	2E-9		0.0961	[0.065-0.127] unit decrease	Illumina [at least 560000] (imputed)	N
606	chr6_mcf_hap5	2837275	2837276	rs150971914	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MICB	rs150971914-T	NR	2E-15		0.0653082	[0.049-0.081] unit decrease	Affymetrix [321016] (imputed)	N
606	chr6_mcf_hap5	2837275	2837276	rs150971914	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MICB	rs150971914-T	NR	7E-9		0.0517554	[0.034-0.069] unit decrease	Affymetrix [323123] (imputed)	N
606	chr6_mcf_hap5	2839123	2839124	rs12192123	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol use disorder	57,564 European ancestry cases, 256,395 European ancestry controls	NA	6p21.33	NR	rs12192123-A	0.2321	2E-8		5.593	[NR] unit decrease	Affymetrix [7003540] (imputed)	N
606	chr6_mcf_hap5	2839734	2839735	rs2904783	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p21.33	NR	rs2904783-C	0.402	9E-6	(IFNalpha_STAT1_of_CD4p_T)			Illumina [5084123] (imputed)	N
606	chr6_mcf_hap5	2840805	2840806	rs12195665	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MICB	rs12195665-A	NR	3E-10		0.0197044	[0.014-0.026] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_mcf_hap5	2840805	2840806	rs12195665	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	MICB	rs12195665-A	NR	4E-10		0.0195546	[0.013-0.026] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_mcf_hap5	2840805	2840806	rs12195665	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	MICB	rs12195665-A	NR	2E-12		0.0223504	[0.016-0.029] unit increase	Affymetrix [321169] (imputed)	N
606	chr6_mcf_hap5	2840815	2840816	rs12202667	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MICB	rs12202667-C	NR	4E-8		0.018764	[0.012-0.025] unit decrease	Affymetrix [323123] (imputed)	N
606	chr6_mcf_hap5	2840894	2840895	rs2904597	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MICB	rs2904597-G	NR	3E-10		0.0229697	[0.016-0.03] unit increase	Affymetrix [323858] (imputed)	N
606	chr6_mcf_hap5	2840894	2840895	rs2904597	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	MICB	rs2904597-G	NR	4E-10		0.0228883	[0.016-0.03] unit increase	Affymetrix [127266] (imputed)	N
606	chr6_mcf_hap5	2840894	2840895	rs2904597	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.33	MICB	rs2904597-G	NR	4E-11		0.0218802	[0.015-0.028] unit increase	Affymetrix [321114] (imputed)	N
606	chr6_mcf_hap5	2841134	2841135	rs2507971	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	6p21.33	MICB	rs2507971-A	0.382584	8E-17		0.022113472	[0.017-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
606	chr6_mcf_hap5	2841134	2841135	rs2507971	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	6p21.33	MICB	rs2507971-T	0.6165	3E-49		0.05419588	[0.047-0.061] unit decrease	Affymetrix [~ 2500000] (imputed)	N
606	chr6_mcf_hap5	2841254	2841255	rs9267325	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	MICB	rs9267325-C	NR	2E-8		0.0226374	[0.015-0.031] unit increase	Affymetrix [321169] (imputed)	N
606	chr6_mcf_hap5	2841320	2841321	rs3094006	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	6p21.33	MICB	rs3094006-C	0.726	1E-12		0.02938566	[0.021-0.037] unit decrease	Affymetrix [~ 2500000] (imputed)	N
606	chr6_mcf_hap5	2841473	2841474	rs2395040	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs2395040-A	0.535	6E-23				Affymetrix [10369434] (imputed)	N
606	chr6_mcf_hap5	2841473	2841474	rs2395040	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	6p21.33	NR	rs2395040-?	NR	9E-7				Illumina [at least 7383741] (imputed)	N
606	chr6_mcf_hap5	2841718	2841719	rs113239947	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	MICB	rs113239947-T	NR	5E-10		0.0206455	[0.014-0.027] unit increase	Affymetrix [321169] (imputed)	N
606	chr6_mcf_hap5	2842086	2842087	rs2516411	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MICB	5,339 Icelandic ancestry individuals	NA	6p21.33		rs2516411-A	0.1051	9E-72		0.494444	[0.44-0.55] unit increase	Illumina [7506463] (imputed)	N
606	chr6_mcf_hap5	2842368	2842368	rs10661543	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MICB	rs10661543-CAAAA	NR	7E-9		0.0186799	[0.012-0.025] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_mcf_hap5	2842368	2842368	rs10661543	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MICB	rs10661543-CAAAA	NR	2E-9		0.0215387	[0.015-0.029] unit increase	Affymetrix [323858] (imputed)	N
606	chr6_mcf_hap5	2842368	2842368	rs10661543	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	MICB	rs10661543-CAAAA	NR	1E-8		0.0183279	[0.012-0.025] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_mcf_hap5	2842368	2842368	rs10661543	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	MICB	rs10661543-CAAAA	NR	2E-8		0.0201129	[0.013-0.027] unit increase	Affymetrix [127266] (imputed)	N
606	chr6_mcf_hap5	2842368	2842368	rs10661543	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MICB	rs10661543-CAAAA	NR	4E-8		0.017737	[0.011-0.024] unit decrease	Affymetrix [321016] (imputed)	N
606	chr6_mcf_hap5	2842506	2842506	rs557297301	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	MICB	rs557297301-CGAGGA	NR	4E-8		0.0173075	[0.011-0.023] unit increase	Affymetrix [321169] (imputed)	N
606	chr6_mcf_hap5	2842693	2842694	rs2534681	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MICB	rs2534681-A	NR	6E-11		0.0184043	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_mcf_hap5	2842693	2842694	rs2534681	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	MICB	rs2534681-A	NR	1E-10		0.0181502	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_mcf_hap5	2842693	2842694	rs2534681	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	MICB	rs2534681-A	NR	1E-11		0.0192736	[0.014-0.025] unit increase	Affymetrix [321169] (imputed)	N
606	chr6_mcf_hap5	2842693	2842694	rs2534681	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	6p21.33	Intergenic	rs2534681-A	0.4679	1E-10	(MTAG)	0.0106	[0.0073-0.0139] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
606	chr6_mcf_hap5	2843142	2843143	rs72844762	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.33		rs72844762-G	0.967	3E-22				Affymetrix [10369434] (imputed)	N
606	chr6_mcf_hap5	2843142	2843143	rs72844762	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	6p21.33	MICB	rs72844762-A	0.034026	3E-11		0.042991024	[0.03-0.056] unit increase	Affymetrix [93095623] (imputed)	N
606	chr6_mcf_hap5	2843253	2843254	rs2516408	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	MICB	rs2516408-A	NR	1E-10		0.0219255	[0.015-0.029] unit decrease	Affymetrix [127266] (imputed)	N
606	chr6_mcf_hap5	2844810	2844811	rs3094005	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	HLA-B, MICB, DDX39B, HCG22, HLA-C, XXbac-BPG248L24.12, ZDHHC20P2, MICA, HCP5, SNORD84, LTB, LTA, LST1, NCR3, HCG27, XXbac-BPG299F13.14, XXbac-BPG299F13.15, XXbac-BPG299F13.16, MIR6891, DHFRP2, RNU6-283P, AL671883.1, FGFR3P1, HLA-S, XXbac-BPG181B23.7, LINC01149, XXbac-BPG181B23.6, Y_RNA, XXbac-BPG16N22.5, PPIAP9, DDX39B-AS1, SNORD117, ATP6V1G2-DDX39B, AL662801.1, ATP6V1G2, NFKBIL1, TNF	rs3094005-T	0.09437751	4E-38	(MHC class I polypeptide-related sequence B)	0.9308	[0.8-1.07] unit decrease	Affymetrix [509946]	N
606	chr6_mcf_hap5	2844866	2844867	rs2534674	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	MICB, Y_RNA	rs2534674-T	0.3517588	7E-16	(EA, MHC class I polypeptide-related sequence B)	0.3579	[0.27-0.44] unit increase	Affymetrix [509946]	N
606	chr6_mcf_hap5	2845818	2845819	rs3828919	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	6p21.33	MICB	rs3828919-A	0.044243	9E-12		0.038664818	[0.028-0.05] unit increase	Affymetrix [93095623] (imputed)	N
606	chr6_mcf_hap5	2845978	2845979	rs41293864	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Strep throat	52,487 European ancestry cases, 22,017 European ancestry controls	NA	6p21.33	NR	rs41293864-?	NR	2E-8		0.0446	[0.029-0.06] unit increase	Illumina [at least 560000] (imputed)	N
606	chr6_mcf_hap5	2846033	2846034	rs9267374	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MICB	rs9267374-C	NR	1E-11		0.0224498	[0.016-0.029] unit decrease	Affymetrix [323123] (imputed)	N
606	chr6_mcf_hap5	2847739	2847740	rs9378160	30940813	Kranzler HR	2019-04-02	Nat Commun	Genome-wide association study of alcohol consumption and use disorder in 274,424 individuals from multiple populations.	Alcohol use disorder	34,658 European American cases, 167,346 European American controls, 17,267 African American cases, 39,381 African American controls, 3,449 Latino American cases, 10,726 Latino American controls, 164 East Asian American cases, 1,210 East Asian American controls, 46 South Asian American cases, 144 South Asian American controls	NA	6p21.33	MICB	rs9378160-C	0.719	2E-8	(Latino)	1.1890606	[1.13-1.25]	Affymetrix [up to 12500000] (imputed)	N
606	chr6_mcf_hap5	2847958	2847959	rs188935761	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 142,336 Japanese ancestry controls	NA	6p21.33	MICB	rs188935761-?	NR	5E-6		0.613998	[0.35-0.88] unit increase	Illumina [19707525] (imputed)	N
606	chr6_mcf_hap5	2849338	2849339	rs2534664	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MICB	rs2534664-A	NR	2E-13		0.0226003	[0.017-0.029] unit decrease	Affymetrix [323123] (imputed)	N
606	chr6_mcf_hap5	2851556	2851557	rs2855811	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.33	NR	rs2855811-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
606	chr6_mcf_hap5	2852476	2852477	rs2855812	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.33	NR	rs2855812-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
606	chr6_mcf_hap5	2852476	2852477	rs2855812	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma and major depressive disorder	46,802 European ancestry asthma cases, 59,851 European ancestry major depressive disorder cases, 460,635 European ancestry controls	NA	6p21.33	AIF1, APOM, ATP6V1G2, BAG6, C6orf15, C6orf25, C6orf47, C6orf48, CDSN, CLIC1, CSNK2B, DDAH2, DDX39B, HCG26, HCG27, HCP5, HLA-B, HSPA1A, HSPA1B, HSPA1L, LSM2, LST1, LTA, LTB, LY6G5B, LY6G5C, LY6G6C, LY6G6D, LY6G6E, LY6G6F, MCCD1, MICA, MICB, MIR4646, MIR6832, MIR6891, MSH5, MSH5-SAPCD1, NCR3, NEU1, NFKBIL1, POU5F1, PRRC2A, PSORS1C1, PSORS1C2, PSORS1C3, SAPCD1, SLC44A4, SNORA38, SNORD48, SNORD52, SNORD84, SNORD117, TCF19, TNF, VARS, VWA7, HLA-C, CCHCR1, GPANK1, ABHD16A	rs2855812-?	NR	2E-16				Affymetrix [up to 13554551] (imputed)	N
606	chr6_mcf_hap5	2852476	2852477	rs2855812	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma (childhood onset)	9,676 European ancestry cases, 347,481 European ancestry controls	NA	6p21.33	ABHD16A, AIF1, APOM, ATP6V1G2, ATP6V1G2-DDX39B, BAG6, C6orf15, C6orf25, C6orf47, C6orf48, CCHCR1, CDSN, CLIC1, CSNK2B, DDAH2, DDX39B, GPANK1, HCG26, HCG27, HCP5, HLA-B, HLA-C, HSPA1A, HSPA1B, HSPA1L, LSM2, LST1, LTA, LTB, LY6G5B, LY6G5C, LY6G6C, LY6G6D, LY6G6E, LY6G6F, MCCD1, MICA, MICB, MIR4646, MIR6832, MIR6891, MSH5, MSH5-SAPCD1, NCR3, NEU1, NFKBIL1, POU5F1, PRRC2A, PSORS1C1, PSORS1C2, PSORS1C3, SAPCD1, SLC44A4, SNORA38, SNORD48, SNORD52, SNORD84, SNORD117, TCF19, TNF, VARS, VWA7	rs2855812-?	NR	4E-7		0.118096	[0.071-0.165] unit decrease	Affymetrix [8274727] (imputed)	N
606	chr6_mcf_hap5	2852476	2852477	rs2855812	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs2855812-G	0.7990625	8E-9	(PDIA5, 5593_11_3)	0.1749456	[0.12-0.23] unit decrease	Illumina [> 1000000] (imputed)	N
606	chr6_mcf_hap5	2852476	2852477	rs2855812	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs2855812-G	0.7990625	8E-14	(C4A C4B, 4481_34_2)	0.23044567	[0.17-0.29] unit increase	Illumina [> 1000000] (imputed)	N
606	chr6_mcf_hap5	2852476	2852477	rs2855812	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs2855812-G	0.7990625	7E-11	(C2, 3186_2_2)	0.20260093	[0.14-0.26] unit decrease	Illumina [> 1000000] (imputed)	N
606	chr6_mcf_hap5	2852476	2852477	rs2855812	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs2855812-G	0.7990625	5E-9	(PILRA, 8683_119_3)	0.17610262	[0.12-0.24] unit decrease	Illumina [> 1000000] (imputed)	N
606	chr6_mcf_hap5	2852476	2852477	rs2855812	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs2855812-G	0.7990625	3E-25	(ISG15, 14148_2_3)	0.31585807	[0.26-0.37] unit decrease	Illumina [> 1000000] (imputed)	N
606	chr6_mcf_hap5	2852476	2852477	rs2855812	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs2855812-G	0.7990625	2E-9	(RACGAP1, 13587_10_3)	0.18150227	[0.12-0.24] unit decrease	Illumina [> 1000000] (imputed)	N
606	chr6_mcf_hap5	2852476	2852477	rs2855812	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs2855812-G	0.7990625	2E-25	(MICB, 9328_55_3)	0.31198063	[0.25-0.37] unit increase	Illumina [> 1000000] (imputed)	N
606	chr6_mcf_hap5	2852476	2852477	rs2855812	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs2855812-G	0.7990625	2E-19	(FTMT, 8048_9_3)	0.27116117	[0.21-0.33] unit increase	Illumina [> 1000000] (imputed)	N
606	chr6_mcf_hap5	2852476	2852477	rs2855812	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs2855812-G	0.7990625	2E-126	(MICB, 5102_55_3)	0.69572484	[0.64-0.75] unit increase	Illumina [> 1000000] (imputed)	N
606	chr6_mcf_hap5	2852476	2852477	rs2855812	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs2855812-G	0.7990625	1E-10	(CREB3L4, 11308_8_3)	0.18975821	[0.13-0.25] unit decrease	Illumina [> 1000000] (imputed)	N
606	chr6_mcf_hap5	2852476	2852477	rs2855812	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls, 2,149 African ancestry cases, 6,055 African ancestry controls, 1,239 Japanese ancestry cases, 3,976 Japanese ancestry controls, 606 Latino cases, 792 Latino controls	NA	6p21.33	MICB, HCP5, MCCD1	rs2855812-T	0.23	9E-12		1.1	[1.07-1.13]	Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
606	chr6_mcf_hap5	2852476	2852477	rs2855812	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls	NA	6p21.33	MICB, MICA, MCCD1	rs2855812-T	0.23	3E-10		0.09	[0.07-0.11] unit increase	Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
606	chr6_mcf_hap5	2852476	2852477	rs2855812	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p21.33	NR	rs2855812-?	NR	1E-16		0.213	[0.16-0.26] unit increase	Illumina [at least 560000] (imputed)	N
606	chr6_mcf_hap5	2852476	2852477	rs2855812	28235828	Traglia M	2017-04-03	G3 (Bethesda)	Independent Maternal and Fetal Genetic Effects on Midgestational Circulating Levels of Environmental Pollutants.	Midgestational circulating levels of PBDEs	329 Hispanic mothers, 273 European ancestry mothers, 122 Asian ancestry mothers, 23 South Asian ancestry mothers, 21 African American mothers, 22 other ancestry mothers	NA	6p21.33	MICB	rs2855812-?		8E-7	(BDE-47)	0.33	[0.19-0.47] unit decrease	Affymetrix [629686]	N
606	chr6_mcf_hap5	2852476	2852477	rs2855812	28235828	Traglia M	2017-04-03	G3 (Bethesda)	Independent Maternal and Fetal Genetic Effects on Midgestational Circulating Levels of Environmental Pollutants.	Midgestational circulating levels of PBDEs	329 Hispanic mothers, 273 European ancestry mothers, 122 Asian ancestry mothers, 23 South Asian ancestry mothers, 21 African American mothers, 22 other ancestry mothers	NA	6p21.33	MICB	rs2855812-?		3E-7	(BDE-100)	0.35	[0.21-0.49] unit decrease	Affymetrix [629686]	N
606	chr6_mcf_hap5	2852476	2852477	rs2855812	28235828	Traglia M	2017-04-03	G3 (Bethesda)	Independent Maternal and Fetal Genetic Effects on Midgestational Circulating Levels of Environmental Pollutants.	Midgestational circulating levels of PBDEs	329 Hispanic mothers, 273 European ancestry mothers, 122 Asian ancestry mothers, 23 South Asian ancestry mothers, 21 African American mothers, 22 other ancestry mothers	NA	6p21.33	MICB	rs2855812-?		2E-6	(Sum PBDE)	0.29	[0.17-0.41] unit decrease	Affymetrix [629686]	N
606	chr6_mcf_hap5	2852476	2852477	rs2855812	21946350	Soler Artigas M	2011-09-25	Nat Genet	Genome-wide association and large-scale follow up identifies 16 new loci influencing lung function.	Pulmonary function	48,201 European ancestry individuals	46,411 European ancestry individuals	6p21.33	MICB	rs2855812-T	NR	2E-7	(FEV1)	0.03	[0.018-0.042] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
606	chr6_mcf_hap5	2853713	2853714	rs3134900	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MICB	5,365 Icelandic ancestry individuals	NA	6p21.33		rs3134900-G	0.08239	7E-220		1.01394	[0.95-1.08] unit decrease	Illumina [7506463] (imputed)	N
606	chr6_mcf_hap5	2853713	2853714	rs3134900	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	MICB	rs3134900-G	0.14	3E-101	(MHC class I polypeptide-related sequence B, MICB.5102.55.3)	0.71	[0.65-0.77] unit decrease	Affymetrix [10572788] (imputed)	N
606	chr6_mcf_hap5	2854576	2854577	rs41293883	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Eczema	7,884 European ancestry cases, 239,773 European ancestry controls	21,000 cases, 96,000 controls	6p21.33	HLA-DQB1	rs41293883-?	0.95847	2E-14		1.4541224	[1.33-1.6]	Affymetrix [15688218] (imputed)	N
606	chr6_mcf_hap5	2854812	2854813	rs41273040	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	6p21.33	MICB	rs41273040-G	0.976386	4E-18		0.0571663	[0.044-0.07] unit decrease	Affymetrix [NR] (imputed)	N
606	chr6_mcf_hap5	2854812	2854813	rs41273040	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.33	NR	rs41273040-?	NR	6E-9				Affymetrix [~ 8270000] (imputed)	N
606	chr6_mcf_hap5	2854883	2854884	rs3131638	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	6p21.33	NR	rs3131638-G	0.7739	8E-10		1.0449321	[1.03-1.06]	Affymetrix, Illumina [NR] (imputed)	N
606	chr6_mcf_hap5	2855242	2855243	rs3132468	22001756	Khor CC	2011-10-16	Nat Genet	Genome-wide association study identifies susceptibility loci for dengue shock syndrome at MICB and PLCE1.	Dengue shock syndrome	2,008 Vietnamese ancestry child cases, 2,018 Vietnamese ancestry child controls	1,737 Vietnamese ancestry child cases, 2,934 Vietnamese ancestry child controls	6p21.33	MICB	rs3132468-?	0.13	4E-11		1.34	[1.23-1.46]	Illumina [481342]	N
606	chr6_mcf_hap5	2855411	2855412	rs9380260	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MICB	rs9380260-A	NR	1E-12		0.0271773	[0.02-0.035] unit decrease	Affymetrix [323123] (imputed)	N
606	chr6_mcf_hap5	2856053	2856054	rs62395355	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.33		rs62395355-C	0.821	9E-12				Affymetrix [10369434] (imputed)	N
606	chr6_mcf_hap5	2856053	2856054	rs62395355	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MICB	rs62395355-A	NR	4E-12		0.0253688	[0.018-0.033] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_mcf_hap5	2856053	2856054	rs62395355	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	MICB	rs62395355-A	NR	8E-12		0.0250776	[0.018-0.032] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_mcf_hap5	2856053	2856054	rs62395355	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	MICB	rs62395355-A	NR	3E-10		0.0233476	[0.016-0.031] unit increase	Affymetrix [321169] (imputed)	N
606	chr6_mcf_hap5	2856214	2856215	rs3130614	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	6p21.33	NR	rs3130614-A	0.119161214504899	1E-11		0.013812465	[0.0098-0.0178] unit decrease	NR [NR]	N
606	chr6_mcf_hap5	2856214	2856215	rs3130614	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	6p21.33	NR	rs3130614-A	0.119161214504899	9E-11		0.017454144	[0.012-0.023] unit decrease	NR [NR]	N
606	chr6_mcf_hap5	2856214	2856215	rs3130614	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	6p21.33	NR	rs3130614-A	0.119161214504899	1E-10		0.014875911	[0.01-0.019] unit decrease	NR [NR]	N
606	chr6_mcf_hap5	2856214	2856215	rs3130614	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	6p21.33	NR	rs3130614-A	0.119161214504899	1E-11		0.011892368	[0.0085-0.0153] unit decrease	NR [NR]	N
606	chr6_mcf_hap5	2856214	2856215	rs3130614	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	6p21.33	MICB	rs3130614-T	NR	3E-10		0.19759	[0.14-0.26] unit increase	Illumina [at least 950000] (imputed)	N
606	chr6_mcf_hap5	2856214	2856215	rs3130614	26291516	Miller FW	2015-08-20	Genes Immun	Genome-wide association study identifies HLA 8.1 ancestral haplotype alleles as major genetic risk factors for myositis phenotypes.	Myositis	1,710 European ancestry cases, 4,724 European ancestry controls	NA	6p21.33	MICB	rs3130614-A	NR	4E-48		2.31	[NR]	Illumina [NR] (imputed)	N
606	chr6_mcf_hap5	2856610	2856611	rs2844498	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MICB	rs2844498-T	NR	7E-13		0.0226459	[0.016-0.029] unit increase	Affymetrix [323858] (imputed)	N
606	chr6_mcf_hap5	2856610	2856611	rs2844498	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	MICB	rs2844498-T	NR	8E-12		0.0215973	[0.015-0.028] unit increase	Affymetrix [127266] (imputed)	N
606	chr6_mcf_hap5	2858705	2858706	rs9267431	33692975	Buda P	2021-02-22	Front Pediatr	Association Between rs12037447, rs146732504, rs151078858, rs55723436, and rs6094136 Polymorphisms and Kawasaki Disease in the Population of Polish Children.	Kawasaki disease	119 European ancestry cases, 6,071 European ancestry controls	NA	6p21.33	MICB	rs9267431-A	0.1194	2E-6		2.113	1.547-2.886	Illumina [164395]	N
606	chr6_mcf_hap5	2858740	2858741	rs2246618	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MICB	rs2246618-T	NR	2E-11		0.0226591	[0.016-0.029] unit decrease	Affymetrix [323858] (imputed)	N
606	chr6_mcf_hap5	2858740	2858741	rs2246618	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume (adjusted for hypertension)	46,055 European ancestry individuals, 2,469 African American individuals	NA	6p21.33	MICB	rs2246618-C	0.3118	7E-6		0.0286	[0.016-0.041] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
606	chr6_mcf_hap5	2858740	2858741	rs2246618	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume (adjusted for hypertension)	46,055 European ancestry individuals	NA	6p21.33	MICB	rs2246618-C	0.3118	4E-6		0.029	[0.017-0.041] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
606	chr6_mcf_hap5	2858740	2858741	rs2246618	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	48,454 European ancestry individuals	NA	6p21.33	MICB	rs2246618-C	0.3118	7E-7		0.0307	[0.019-0.043] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
606	chr6_mcf_hap5	2858740	2858741	rs2246618	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	2,516 African American individuals, 48,454 European ancestry individuals	NA	6p21.33	MICB	rs2246618-C	0.3118	2E-6		0.03	[0.018-0.042] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
606	chr6_mcf_hap5	2859399	2859400	rs3132463	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MICB	rs3132463-T	NR	5E-9		0.0213533	[0.014-0.028] unit increase	Affymetrix [323123] (imputed)	N
606	chr6_mcf_hap5	2860424	2860425	rs3132461	28806749	Leo PJ	2017-08-14	PLoS Genet	Defining the genetic susceptibility to cervical neoplasia-A genome-wide association study.	Cervical cancer	2,866 European ancestry cases, 6,481 European ancestry controls	NA	6p21.33	MICB, MCCD1	rs3132461-G	NR	2E-13		1.358	[NR]	Illumina [10863230] (imputed)	N
606	chr6_mcf_hap5	2860848	2860849	rs3132459	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MICB	rs3132459-C	NR	4E-8		0.0179194	[0.012-0.024] unit increase	Affymetrix [321016] (imputed)	N
606	chr6_mcf_hap5	2861026	2861026	rs5875324	30787463	Escala-Garcia M	2019-02-21	Br J Cancer	Genome-wide association study of germline variants and breast cancer-specific mortality.	Breast cancer specific mortality in breast cancer	7,697 European ancestry cases, 88,964 European ancestry controls	NA	6p21.33	NR	rs5875324-?	NR	2E-6		0.8744475	[0.83-0.92]	Affymetrix, Illumina [~ 10400000] (imputed)	N
606	chr6_mcf_hap5	2861055	2861056	rs2516399	21738478	Okada Y	2011-06-30	PLoS Genet	Identification of nine novel loci associated with white blood cell subtypes in a Japanese population.	White blood cell types	8,794 Japanese ancestry individuals	5,998 Japanese ancestry individuals	6p21.33	MHC	rs2516399-A	0.81	2E-12	(eosinophil count)	0.105	[0.08-0.14] unit increase	Illumina [2178645] (imputed)	N
606	chr6_mcf_hap5	2862897	2862898	rs2844495	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG16N22.5	rs2844495-G	NR	2E-18		0.0261655	[0.02-0.032] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_mcf_hap5	2862897	2862898	rs2844495	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG16N22.5	rs2844495-G	NR	2E-18		0.0261197	[0.02-0.032] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_mcf_hap5	2862897	2862898	rs2844495	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG16N22.5	rs2844495-G	NR	1E-10		0.0210221	[0.015-0.027] unit decrease	Affymetrix [323123] (imputed)	N
606	chr6_mcf_hap5	2862897	2862898	rs2844495	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG16N22.5	rs2844495-G	NR	3E-16		0.024738	[0.019-0.031] unit increase	Affymetrix [321169] (imputed)	N
606	chr6_mcf_hap5	2862967	2862968	rs62397979	31320639	Hillary RF	2019-07-18	Nat Commun	Genome and epigenome wide studies of neurological protein biomarkers in the Lothian Birth Cohort 1936.	Neurological blood protein biomarker levels	750 European ancestry individuals	NA	6p21.33	XXbac-BPG16N22.5	rs62397979-G	0.0469	1E-26	(Alpha-2-MRAP)	1.36939	[1.12-1.62] unit increase	Illumina [8683751] (imputed)	N
606	chr6_mcf_hap5	2863461	2863462	rs17200698	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	Y_RNA, MICB, PPIAP9, XXbac-BPG16N22.5, RPL15P4, MCCD1, ATP6V1G2, ATP6V1G2-DDX39B, NFKBIL1, LST1, NCR3	rs17200698-T	0.0361809	1E-11	(EA, MHC class I polypeptide-related sequence A)	0.813	[0.58-1.04] unit increase	Affymetrix [509946]	N
606	chr6_mcf_hap5	2864278	2864279	rs2395045	28031287	Sasayama D	2016-11-26	Hum Mol Genet	Genome-wide quantitative trait loci mapping of the human cerebrospinal fluid proteome.	Cerebrospinal fluid biomarker levels	133 Japanese ancestry individuals.	NA	6p21.33	NR	rs2395045-?	NR	6E-9	(MHC class I polypeptide-related sequence B)			Illumina [514227]	N
606	chr6_mcf_hap5	2864444	2864445	rs3131631	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cervical cancer	6,563 European ancestry cases, 410,350 European ancestry controls	NA	6p21.33		rs3131631-G	NR	5E-10		1.1332	NR	Affymetrix [7846216] (imputed)	N
606	chr6_mcf_hap5	2864856	2864857	rs2516491	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG16N22.5	rs2516491-C	NR	1E-8		0.0197328	[0.013-0.027] unit decrease	Affymetrix [323858] (imputed)	N
606	chr6_mcf_hap5	2865109	2865110	rs3131630	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG16N22.5	rs3131630-G	NR	1E-9		0.0197999	[0.013-0.026] unit decrease	Affymetrix [319769] (imputed)	N
606	chr6_mcf_hap5	2865109	2865110	rs3131630	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG16N22.5	rs3131630-G	NR	3E-9		0.019409	[0.013-0.026] unit decrease	Affymetrix [319769] (imputed)	N
606	chr6_mcf_hap5	2866159	2866160	rs149066340	30111768	Yao C	2018-08-15	Nat Commun	Genome-wide mapping of plasma protein QTLs identifies putatively causal genes and pathways for cardiovascular disease.	Blood protein levels	6861 European ancestry individuals	4298 European ancestry individuals	6p21.33		rs149066340-C	0.979	1E-36	(C2)	0.92	unit increase	Affymetrix, Illumina [8509364] (imputed)	N
606	chr6_mcf_hap5	2867213	2867214	rs34451538	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs34451538-G	0.971	6E-20				Affymetrix [10369434] (imputed)	N
606	chr6_mcf_hap5	2867213	2867214	rs34451538	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.33	PPIAP9	rs34451538-A	0.028767	2E-9		0.044486254	[0.03-0.059] unit decrease	Affymetrix [93095623] (imputed)	N
606	chr6_mcf_hap5	2867713	2867714	rs3132455	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large HDL	115,082 European ancestry individuals	NA	6p21.33		rs3132455-G	0.653225	3E-10		0.0260764	[0.018-0.034] unit increase	NR [11722792] (imputed)	N
606	chr6_mcf_hap5	2869406	2869407	rs3132454	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PPIAP9	rs3132454-G	NR	2E-8		0.0168062	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_mcf_hap5	2869406	2869407	rs3132454	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PPIAP9	rs3132454-G	NR	4E-12		0.0205728	[0.015-0.026] unit decrease	Affymetrix [321016] (imputed)	N
606	chr6_mcf_hap5	2869406	2869407	rs3132454	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	PPIAP9	rs3132454-G	NR	2E-8		0.0183183	[0.012-0.025] unit decrease	Affymetrix [323123] (imputed)	N
606	chr6_mcf_hap5	2870896	2870897	rs3093992	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	PPIAP9	rs3093992-C	NR	3E-8		0.0191109	[0.012-0.026] unit increase	Affymetrix [323123] (imputed)	N
606	chr6_mcf_hap5	2871780	2871781	rs114060326	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)(bidirectional)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.33		rs114060326-G	NR	3E-10				Affymetrix [7846216] (imputed)	N
606	chr6_mcf_hap5	2872217	2872218	rs3093988	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	RPL15P4	rs3093988-A	NR	8E-12		0.0266126	[0.019-0.034] unit increase	Affymetrix [323123] (imputed)	N
606	chr6_mcf_hap5	2872217	2872218	rs3093988	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	316,772 European ancestry male individuals	NA	6p21.33	NR	rs3093988-A	0.1856	8E-20		0.0203	[0.016-0.025] unit decrease	NR [~ 27400000] (imputed)	N
606	chr6_mcf_hap5	2875373	2875374	rs2734580	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	RPL15P4	rs2734580-T	NR	8E-16		0.0360498	[0.027-0.045] unit decrease	Affymetrix [323123] (imputed)	N
606	chr6_mcf_hap5	2876319	2876320	rs2516482	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.33	MCCD1	rs2516482-G	0.195446	1E-15		0.038059197	[0.029-0.047] unit increase	Affymetrix [93095623] (imputed)	N
606	chr6_mcf_hap5	2876675	2876676	rs3093983	33649182	Penova M	2021-03-01	Proc Natl Acad Sci U S A	Genome wide association study of HTLV-1-associated myelopathy/tropical spastic paraparesis in the Japanese population.	HTLV-1 associated myelopathy	731 Japanese ancestry cases, 846 Japanese ancestry controls	NA	6p21.33		rs3093983-G	0.08	4E-7		1.86	[1.47-2.37]	Illumina [126394]	N
606	chr6_mcf_hap5	2879352	2879353	rs3853601	22197932	Paternoster L	2011-12-25	Nat Genet	Meta-analysis of genome-wide association studies identifies three new risk loci for atopic dermatitis.	Atopic dermatitis	5,606 European ancestry cases, 20,565 European ancestry controls	5,419 European ancestry cases, 19,833 European ancestry controls	6p21.33	BAT1	rs3853601-G	0.12	2E-6		1.13	[1.08-1.19]	Affymetrix, Illumina [~ 2500000] (imputed)	N
607	chr6_mcf_hap5	2883943	2883944	rs114751021	33841421	Li J	2021-03-25	Front Immunol	Variants at the MHC Region Associate With Susceptibility to <i>Clostridioides difficile</i> Infection: A Genome-Wide Association Study Using Comprehensive Electronic Health Records.	Clostridioides difficle infection in antibiotics-users	587 European ancestry cases, 3,166 European ancestry controls	NA	6p21.33	SNORD117	rs114751021-G	0.024	5E-8		2.41	[1.84-3.09]	Illumina [64973696] (imputed)	N
607	chr6_mcf_hap5	2885229	2885230	rs2734583	21912425	Tohkin M	2011-09-13	Pharmacogenomics J	A whole-genome association study of major determinants for allopurinol-related Stevens-Johnson syndrome and toxic epidermal necrolysis in Japanese patients.	Stevens-Johnson syndrome and toxic epidermal necrolysis (SJS-TEN)	14 Japanese ancestry cases, 991 Japanese ancestry controls	NA	6p21.33	PSORS1C1, PSORS1C3, BAT1, HLA-C, MICC, PPIAP9, POLR2LP, CCHCR1, TCF19, HLA-B*5801, HCP5, POU5F1	rs2734583-?	0.0055	2E-8		66.8	[19.8-225.0]	Illumina [890321]	N
607	chr6_mcf_hap5	2885539	2885540	rs9267485	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	6p21.33	DDX39B	rs9267485-G	NR	2E-17		0.0531442	[0.041-0.065] unit decrease	Illumina [13520550] (imputed)	N
607	chr6_mcf_hap5	2886440	2886441	rs2071596	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	6p21.33	DDX39B	rs2071596-A	0.163229	1E-42		0.04289182	[0.037-0.049] unit increase	Affymetrix [93095623] (imputed)	N
607	chr6_mcf_hap5	2886440	2886441	rs2071596	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6p21.33	DDX39B	rs2071596-A	0.163228	9E-50		0.046432465	[0.04-0.053] unit increase	Affymetrix [93095623] (imputed)	N
607	chr6_mcf_hap5	2886440	2886441	rs2071596	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6p21.33	DDX39B	rs2071596-A	0.163185	2E-27		0.03458288	[0.028-0.041] unit decrease	Affymetrix [93095623] (imputed)	N
607	chr6_mcf_hap5	2886440	2886441	rs2071596	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6p21.33	DDX39B	rs2071596-A	0.163195	5E-24		0.030947343	[0.025-0.037] unit increase	Affymetrix [93095623] (imputed)	N
607	chr6_mcf_hap5	2887685	2887686	rs2269476	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	6p21.33	DDX39B, ATP6V1G2-DDX39B	rs2269476-A	0.179	2E-24		0.04806173	[0.039-0.057] unit increase	Affymetrix [~ 2500000] (imputed)	N
607	chr6_mcf_hap5	2890670	2890671	rs2844509	35023831	Chong M	2022-01-13	Elife	GWAS and ExWAS of blood Mitochondrial DNA copy number identifies 71 loci and highlights a potential causal role in dementia.	Mitochondrial DNA copy number	395,718 British, Irish, Other White, South Asian, African ancestry individuals	NA	6p21.33	NR	rs2844509-G	0.242812	3E-8		0.014	[0.0091-0.0189] unit increase	Affymetrix [23037915] (imputed)	N
607	chr6_mcf_hap5	2893148	2893149	rs2239705	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	6p21.33	NR	rs2239705-?		8E-9	(MICA)			Illumina [NR]	N
607	chr6_mcf_hap5	2893989	2893990	rs9267488	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p21.33	NR	rs9267488-?	NR	3E-6		4.68	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
607	chr6_mcf_hap5	2893989	2893990	rs9267488	26291516	Miller FW	2015-08-20	Genes Immun	Genome-wide association study identifies HLA 8.1 ancestral haplotype alleles as major genetic risk factors for myositis phenotypes.	Myositis	1,710 European ancestry cases, 4,724 European ancestry controls	NA	6p21.33	ATP6V1G2, DDX39B	rs9267488-G	NR	6E-49		2.32	[NR]	Illumina [NR] (imputed)	N
607	chr6_mcf_hap5	2894190	2894191	rs34568880	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	6p21.33	ATP6V1G2	rs34568880-C	0.986687	6E-10		0.0562557	[0.038-0.074] unit decrease	Affymetrix [NR] (imputed)	N
607	chr6_mcf_hap5	2895504	2895505	rs2239708	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	6p21.33	ATP6V1G2, NFKBIL1	rs2239708-T	0.033249	2E-12		0.04410994	[0.032-0.056] unit increase	Affymetrix [93095623] (imputed)	N
607	chr6_mcf_hap5	2895540	2895541	rs2071591	26562150	Seldin MF	2015-10-10	Mol Med	Genome-wide Association Study of Late-Onset Myasthenia Gravis: Confirmation of TNFRSF11A, and Identification of ZBTB10 and Three Distinct HLA Associations.	Late-onset myasthenia gravis	532 European ancestry cases, 2,128 European ancestry controls	NA	6p21.33	MHC_Class III	rs2071591-?	NR	4E-12				Illumina [6175472] (imputed)	N
607	chr6_mcf_hap5	2897644	2897645	rs2523501	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (multivariate analysis)	477,968 European ancestry individuals	NA	6p21.33	NFKBIL1	rs2523501-C	0.152	8E-10		0.036	[0.024-0.048] unit decrease	NR [NR] (imputed)	N
607	chr6_mcf_hap5	2899394	2899395	rs2516383	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	NFKBIL1	rs2516383-C	NR	3E-9		0.0206882	[0.014-0.027] unit increase	Affymetrix [323123] (imputed)	N
607	chr6_mcf_hap5	2900162	2900163	rs6916921	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	LST1, NCR3, ATP6V1G2, TNF, NFKBIL1, LTA, LTB	rs6916921-T	0.1330321	2E-23	(Natural cytotoxicity triggering receptor 3)	0.6188	[0.5-0.74] unit decrease	Affymetrix [509946]	N
607	chr6_mcf_hap5	2900393	2900394	rs34492353	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.33	NR	rs34492353-?	NR	1E-13				Affymetrix [~ 8270000] (imputed)	N
607	chr6_mcf_hap5	2900393	2900394	rs34492353	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.33	NR	rs34492353-?	NR	6E-12				Affymetrix [~ 8270000] (imputed)	N
607	chr6_mcf_hap5	2901330	2901331	rs34268928	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	6p21.33	NFKBIL1	rs34268928-T	0.02077	2E-9		0.04651516	[0.031-0.062] unit decrease	Affymetrix [93095623] (imputed)	N
607	chr6_mcf_hap5	2902404	2902405	rs6929796	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	6p21.33	NFKBIL1	rs6929796-A	0.172	3E-8		0.0092	[0.0059-0.0125] unit decrease	Affymetrix, Illumina [33811881] (imputed)	N
607	chr6_mcf_hap5	2902404	2902405	rs6929796	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	6p21.33	NFKBIL1	rs6929796-A	0.163327	3E-33		0.036523763	[0.031-0.042] unit increase	Affymetrix [93095623] (imputed)	N
607	chr6_mcf_hap5	2902404	2902405	rs6929796	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6p21.33	NFKBIL1	rs6929796-A	0.163358	2E-18		0.030205907	[0.023-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
607	chr6_mcf_hap5	2902404	2902405	rs6929796	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	6p21.33	NFKBIL1	rs6929796-A	0.1634	8E-16		0.03895272	[0.029-0.048] unit increase	Affymetrix [~ 2500000] (imputed)	N
607	chr6_mcf_hap5	2902404	2902405	rs6929796	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	6p21.33	NFKBIL1	rs6929796-A	0.1635	5E-17		0.04056459	[0.031-0.05] unit increase	Affymetrix [~ 2500000] (imputed)	N
607	chr6_mcf_hap5	2902404	2902405	rs6929796	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	6p21.33	NFKBIL1	rs6929796-A	0.1635	7E-11		0.03154443	[0.022-0.041] unit increase	Affymetrix [~ 2500000] (imputed)	N
607	chr6_mcf_hap5	2902404	2902405	rs6929796	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	6p21.33	NFKBIL1	rs6929796-A	0.1635	7E-12		0.03316401	[0.024-0.043] unit increase	Affymetrix [~ 2500000] (imputed)	N
607	chr6_mcf_hap5	2903406	2903407	rs35597084	32592749	Butler-Laporte G	2020-06-24	Clin Microbiol Infect	Elevated body-mass index is associated with an increased risk of infectious disease admissions and mortality: a mendelian randomization study.	Sepsis (90-day mortality)	341 European ancestry cases, 1,696 European ancestry controls	NA	6p21.33	NFKBIL1	rs35597084-C	0.96	4E-8		0.17	[0.11-0.23] unit decrease	NR [NR]	N
607	chr6_mcf_hap5	2904585	2904586	rs2857605	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	6p21.33	NFKBIL1	rs2857605-C	0.21061104132454	6E-14		0.0672	[0.05-0.085] unit decrease	NR [5035015] (imputed)	N
607	chr6_mcf_hap5	2905181	2905182	rs2230365	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.33		rs2230365-C	0.859	7E-16				Affymetrix [10369434] (imputed)	N
607	chr6_mcf_hap5	2905181	2905182	rs2230365	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	NFKBIL1	rs2230365-T	NR	1E-12		0.0288606	[0.021-0.037] unit decrease	Affymetrix [321016] (imputed)	N
607	chr6_mcf_hap5	2905181	2905182	rs2230365	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	NFKBIL1	rs2230365-T	NR	1E-11		0.0299572	[0.021-0.039] unit decrease	Affymetrix [323123] (imputed)	N
607	chr6_mcf_hap5	2905181	2905182	rs2230365	26414677	Day FR	2015-11-01	Nat Genet	Large-scale genomic analyses link reproductive aging to hypothalamic signaling, breast cancer susceptibility and BRCA1-mediated DNA repair.	Menopause (age at onset)	up to 69,626 European ancestry women	NA	6p21.33	MSH5, HLA	rs2230365-C	0.84	8E-10		0.17	[0.11-0.23] years decrease	Affymetrix, Illumina [~ 2600000] (imputed)	N
607	chr6_mcf_hap5	2907862	2907863	rs4947324	33235445	Lee YJ	2020-11-17	Int J Chron Obstruct Pulmon Dis	A Genome-Wide Association Study in Early COPD: Identification of One Major Susceptibility Loci.	Early chronic obstructive pulmonary disease in never smokers	38 Korean ancestry cases, 1,778 Korean ancestry controls	NA	6p21.33	NFKBIL1	rs4947324-?	NR	8E-6	(PS matching analysis)	4.16	NR	Affymetrix [345072]	N
607	chr6_mcf_hap5	2909066	2909067	rs2516392	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.33		rs2516392-G	0.6215470000000001	7E-47		1.0639546	[1.05-1.08]	Affymetrix, Illumina [9851866] (imputed)	N
607	chr6_mcf_hap5	2910403	2910404	rs138885312	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs138885312-?		2E-8		1.8	[1.47-2.20]	Illumina [7645193] (imputed)	N
607	chr6_mcf_hap5	2910540	2910541	rs28732143	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs28732143-A	0.041	1E-64	(MHC class I polypeptide-related sequence B, MICB.5102.55.3)	1.02	[0.9-1.14] unit increase	Affymetrix [10572788] (imputed)	N
607	chr6_mcf_hap5	2912250	2912251	rs111584145	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	6p21.33		rs111584145-G	0.615516	1E-9		0.01450694	[0.0098-0.0192] unit increase	Affymetrix [93095623] (imputed)	N
607	chr6_mcf_hap5	2912250	2912251	rs111584145	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6p21.33		rs111584145-G	0.615476	1E-15		0.022145554	[0.017-0.028] unit increase	Affymetrix [93095623] (imputed)	N
607	chr6_mcf_hap5	2912543	2912544	rs2857709	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	NFKBIL1	rs2857709-A	NR	5E-10		0.0243153	[0.017-0.032] unit decrease	Affymetrix [319769] (imputed)	N
607	chr6_mcf_hap5	2912543	2912544	rs2857709	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	NFKBIL1	rs2857709-A	NR	1E-9		0.0236953	[0.016-0.031] unit decrease	Affymetrix [319769] (imputed)	N
607	chr6_mcf_hap5	2913107	2913108	rs2857602	33106546	Johnson TA	2020-10-26	J Hum Genet	Association of an IGHV3-66 gene variant with Kawasaki disease.	Kawasaki disease	1,276 East Asian ancestry cases, 5,086 East Asian ancestry controls	2,152 East Asian ancestry cases, 2,751 East Asian ancestry controls	6p21.33	LTA	rs2857602-A	NR	3E-15		0.78	[0.73-0.83]	Affymetrix, Illumina [6265045] (imputed)	N
607	chr6_mcf_hap5	2913107	2913108	rs2857602	32805626	Yuan S	2020-08-14	EBioMedicine	Effects of tumour necrosis factor on cardiovascular disease and cancer: A two-sample Mendelian randomization study.	Tumor necrosis factor levels	30,912 European ancestry individuals	NA	6p21.33	LTA	rs2857602-G	0.38	3E-12		0.032	[0.02-0.044] unit increase	NR [NR]	N
607	chr6_mcf_hap5	2914861	2914862	rs190775951	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs190775951-A	0.017	8E-16	(MHC class I polypeptide-related sequence B, MICB.5102.55.3)	0.86	[0.64-1.08] unit increase	Affymetrix [10572788] (imputed)	N
607	chr6_mcf_hap5	2917982	2917983	rs3093539	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	6p21.33	ABHD16A, AIF1, APOM, ATP6V1G2, ATP6V1G2-DDX39B, BAG6, C2, C4A, C4B, C4B_2, C6orf25, C6orf47, C6orf48, CFB, CLIC1, CSNK2B, CYP21A1P, CYP21A2, DDAH2, DDX39B, DXO, EHMT2, GPANK1, HSPA1A, HSPA1B, HSPA1L, LOC102060414, LSM2, LST1, LTA, LTB, LY6G5B, LY6G5C, LY6G6C, LY6G6D, LY6G6E, LY6G6F, MCCD1, MICB, MIR1236, MIR4646, MIR6832, MSH5, MSH5-SAPCD1, NCR3, NELFE, NEU1, NFKBIL1, PRRC2A, SAPCD1, SKIV2L, SLC44A4, SNORA38, SNORD48, SNORD52, SNORD84, SNORD117, STK19, TNF, TNXA, TNXB, VARS, VWA7, ZBTB12	rs3093539-G	0.9841	1E-9		1.189845	[1.14-1.24]	Affymetrix [8274727] (imputed)	N
607	chr6_mcf_hap5	2918201	2918203	rs736160	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	LTA	rs736160-A	NR	1E-13		0.0220518	[0.016-0.028] unit increase	Affymetrix [319769] (imputed)	N
607	chr6_mcf_hap5	2918201	2918203	rs736160	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	LTA	rs736160-A	NR	1E-12		0.0211835	[0.015-0.027] unit increase	Affymetrix [319769] (imputed)	N
607	chr6_mcf_hap5	2918201	2918203	rs736160	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	LTA	rs736160-A	NR	7E-14		0.0222905	[0.016-0.028] unit decrease	Affymetrix [321016] (imputed)	N
607	chr6_mcf_hap5	2918201	2918203	rs736160	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	LTA	rs736160-A	NR	1E-21		0.0310209	[0.025-0.037] unit decrease	Affymetrix [323123] (imputed)	N
607	chr6_mcf_hap5	2918201	2918203	rs736160	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	LTA	rs736160-A	NR	3E-11		0.0199683	[0.014-0.026] unit increase	Affymetrix [321169] (imputed)	N
607	chr6_mcf_hap5	2919470	2919471	rs2844482	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	6p21.33	ABHD16A, AIF1, APOM, ATP6V1G2, ATP6V1G2-DDX39B, BAG6, C6orf25, C6orf47, CSNK2B, DDAH2, DDX39B, GPANK1, LST1, LTA, LTB, LY6G5B, LY6G5C, LY6G6C, LY6G6D, LY6G6E, LY6G6F, MCCD1, MICB, MIR4646, MIR6832, NCR3, NFKBIL1, PRRC2A, SNORA38, SNORD84, SNORD117, TNF	rs2844482-T	0.152664	1E-9		1.0639137	[1.04-1.08]	Affymetrix [8274727] (imputed)	N
607	chr6_mcf_hap5	2919470	2919471	rs2844482	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Perceived unattractiveness to mosquitoes	16,576 European ancestry individuals	NA	6p21.33	intergenic	rs2844482-T	NR	8E-6		0.145906	[0.082-0.21] unit decrease	Illumina [7433384] (imputed)	N
607	chr6_mcf_hap5	2919471	2919472	rs2071590	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	6p21.33	NR	rs2071590-A	0.363817	4E-9		0.042927716	[0.029-0.057] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
607	chr6_mcf_hap5	2919471	2919472	rs2071590	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	6p21.33	Intergenic	rs2071590-A	0.378	1E-8		0.0133	[0.0088-0.0178] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
607	chr6_mcf_hap5	2919844	2919845	rs2239704	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	6p21.33	LTA	rs2239704-A	0.385621	2E-12		0.01774556	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
607	chr6_mcf_hap5	2919844	2919845	rs2239704	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	6p21.33	NR	rs2239704-A	0.384392	1E-14		0.0163675	[0.012-0.021] unit decrease	NR [NR]	N
607	chr6_mcf_hap5	2919844	2919845	rs2239704	28806749	Leo PJ	2017-08-14	PLoS Genet	Defining the genetic susceptibility to cervical neoplasia-A genome-wide association study.	Cervical cancer	2,866 European ancestry cases, 6,481 European ancestry controls	NA	6p21.33	TNF	rs2239704-A	NR	6E-9		1.23	[NR]	Illumina [10863230] (imputed)	N
607	chr6_mcf_hap5	2920261	2920262	rs2229094	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.33		rs2229094-T	0.746	4E-60				Affymetrix [10369434] (imputed)	N
607	chr6_mcf_hap5	2920261	2920262	rs2229094	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	6p21.33		rs2229094-T	0.746	9E-34				Affymetrix [10369434] (imputed)	N
607	chr6_mcf_hap5	2920261	2920262	rs2229094	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.33		rs2229094-T	0.746	3E-36				Affymetrix [10369434] (imputed)	N
607	chr6_mcf_hap5	2920261	2920262	rs2229094	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	6p21.33		rs2229094-T	0.746	2E-47				Affymetrix [10369434] (imputed)	N
607	chr6_mcf_hap5	2920261	2920262	rs2229094	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs2229094-T	0.746	6E-107				Affymetrix [10369434] (imputed)	N
607	chr6_mcf_hap5	2920261	2920262	rs2229094	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p21.33		rs2229094-T	0.746	4E-37				Affymetrix [10369434] (imputed)	N
607	chr6_mcf_hap5	2920261	2920262	rs2229094	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	6p21.33	LTA	rs2229094-C	0.254265	6E-29		0.029798461	[0.025-0.035] unit increase	Affymetrix [93095623] (imputed)	N
607	chr6_mcf_hap5	2920261	2920262	rs2229094	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.33	LTA	rs2229094-C	0.254251	7E-45		0.040826518	[0.035-0.047] unit increase	Affymetrix [93095623] (imputed)	N
607	chr6_mcf_hap5	2920261	2920262	rs2229094	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.33	NR	rs2229094-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
607	chr6_mcf_hap5	2920261	2920262	rs2229094	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	White blood cell count	8,825 African American individuals, 18,251 Hispanic/Latino individuals, 543 Asian ancestry individuals, 606 Native American ancestry individuals, 383 individuals	NA	6p21.33	NR	rs2229094-?	NR	4E-6		0.01256537	[0.0072-0.0179] unit increase	Illumina [30613845] (imputed)	N
607	chr6_mcf_hap5	2920261	2920262	rs2229094	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	6p21.33	LTA	rs2229094-C	0.2537	8E-43		0.0564668	[0.048-0.065] unit increase	Affymetrix [~ 2500000] (imputed)	N
607	chr6_mcf_hap5	2920261	2920262	rs2229094	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	6p21.33	LTA	rs2229094-C	0.2536	4E-15		0.03213321	[0.024-0.04] unit increase	Affymetrix [~ 2500000] (imputed)	N
607	chr6_mcf_hap5	2920261	2920262	rs2229094	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	6p21.33	LTA	rs2229094-C	0.2535	6E-72		0.07418746	[0.066-0.082] unit increase	Affymetrix [~ 2500000] (imputed)	N
607	chr6_mcf_hap5	2920462	2920463	rs2229092	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	LTA	rs2229092-C	NR	5E-9		0.0338477	[0.022-0.045] unit decrease	Affymetrix [321016] (imputed)	N
607	chr6_mcf_hap5	2920462	2920463	rs2229092	32641083	Hillary RF	2020-07-08	Genome Med	Multi-method genome- and epigenome-wide studies of inflammatory protein levels in healthy older adults.	Tumor necrosis factor beta levels	982 Scottish ancestry individuals	NA	6p21.33	NR	rs2229092-C	0.05477	5E-31		1.15038	[0.96-1.35] unit decrease	Illumina [7903493] (imputed)	N
607	chr6_mcf_hap5	2920662	2920663	rs4647195	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.33	NR	rs4647195-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
607	chr6_mcf_hap5	2922013	2922014	rs1799964	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	89,266 East Asian ancestry individuals	NA	6p21.33	NR	rs1799964-T	0.827369	7E-15		0.048854	[0.037-0.061] SD units decrease	Affymetrix, Illumina [16289068] (imputed)	N
607	chr6_mcf_hap5	2922013	2922014	rs1799964	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.33	NR	rs1799964-?	NR	1E-11				Affymetrix [~ 8270000] (imputed)	N
607	chr6_mcf_hap5	2922013	2922014	rs1799964	21102463	Franke A	2010-11-21	Nat Genet	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry trios	6p21.33	HLA-DQA2, LTA, TNF, LST1, LTB	rs1799964-C	0.209	4E-11		1.19	[1.13-1.25]	Affymetrix, Illumina [953241] (imputed)	N
607	chr6_mcf_hap5	2922736	2922737	rs1800629	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	TNF	rs1800629-A	NR	3E-12		0.0274188	[0.02-0.035] unit decrease	Affymetrix [323858] (imputed)	N
607	chr6_mcf_hap5	2922736	2922737	rs1800629	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	6p21.33	TNF	rs1800629-A	0.166	8E-19		0.2902	[0.23-0.35] mmHg increase	Affymetrix [NR] (imputed)	N
607	chr6_mcf_hap5	2923532	2923533	rs1800610	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NCR3	5,364 Icelandic ancestry individuals	NA	6p21.33		rs1800610-A	0.05852	5E-49		0.548141	[0.48-0.62] unit decrease	Illumina [7506463] (imputed)	N
607	chr6_mcf_hap5	2923894	2923895	rs3093662	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	6p21.33	NR	rs3093662-A	0.92	2E-10		0.0223	[0.015-0.029] unit increase	NR [NR]	N
607	chr6_mcf_hap5	2924347	2924348	rs3093664	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MICB	5,339 Icelandic ancestry individuals	NA	6p21.33		rs3093664-G	0.08964	1E-117		0.671593	[0.61-0.73] unit increase	Illumina [7506463] (imputed)	N
607	chr6_mcf_hap5	2924347	2924348	rs3093664	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p21.33	TNF	rs3093664-G	0.048	3E-7		0.13	[0.081-0.179] unit increase	Affymetrix, Illumina [7374092] (imputed)	N
607	chr6_mcf_hap5	2924347	2924348	rs3093664	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs3093664-A	0.916875	8E-64	(MICB, 9328_55_3)	0.73897094	[0.66-0.82] unit decrease	Illumina [> 1000000] (imputed)	N
607	chr6_mcf_hap5	2924347	2924348	rs3093664	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs3093664-A	0.916875	8E-11	(C4A C4B, 2182_54_1)	0.29393905	[0.21-0.38] unit increase	Illumina [> 1000000] (imputed)	N
607	chr6_mcf_hap5	2924347	2924348	rs3093664	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs3093664-A	0.916875	3E-14	(IL36A, 14150_7_3)	0.34182286	[0.25-0.43] unit increase	Illumina [> 1000000] (imputed)	N
607	chr6_mcf_hap5	2924347	2924348	rs3093664	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs3093664-A	0.916875	1E-111	(MICB, 5102_55_3)	0.9721669	[0.89-1.05] unit decrease	Illumina [> 1000000] (imputed)	N
607	chr6_mcf_hap5	2924347	2924348	rs3093664	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs3093664-A	0.916875	1E-10	(USP25, 9215_117_3)	0.28181827	[0.2-0.37] unit decrease	Illumina [> 1000000] (imputed)	N
607	chr6_mcf_hap5	2926555	2926556	rs1800628	27749845	Lesseur C	2016-10-17	Nat Genet	Genome-wide association analyses identify new susceptibility loci for oral cavity and pharyngeal cancer.	Oral cavity cancer	2,717 European ancestry cases, 273 cases, 5,984 European ancestry controls, 601 controls	NA	6p21.33	MICB, AIF1	rs1800628-A	0.07	7E-8		1.3962	NR	Illumina [7574753] (imputed)	N
607	chr6_mcf_hap5	2927219	2927220	rs769178	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs769178-G	0.94078125	8E-31	(NCR3, 3003_29_2)	0.5867702	[0.49-0.69] unit increase	Illumina [> 1000000] (imputed)	N
607	chr6_mcf_hap5	2927219	2927220	rs769178	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs769178-G	0.94078125	4E-26	(ISG15, 14148_2_3)	0.54343	[0.44-0.64] unit increase	Illumina [> 1000000] (imputed)	N
607	chr6_mcf_hap5	2927219	2927220	rs769178	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs769178-G	0.94078125	3E-10	(TNXB, 5698_60_3)	0.32249722	[0.22-0.42] unit increase	Illumina [> 1000000] (imputed)	N
607	chr6_mcf_hap5	2927219	2927220	rs769178	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs769178-G	0.94078125	1E-40	(MICA, 2730_58_2)	0.67921454	[0.58-0.78] unit increase	Illumina [> 1000000] (imputed)	N
607	chr6_mcf_hap5	2927219	2927220	rs769178	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs769178-G	0.94078125	1E-33	(C2, 3186_2_2)	0.63008285	[0.53-0.73] unit increase	Illumina [> 1000000] (imputed)	N
607	chr6_mcf_hap5	2927316	2927317	rs769177	30226566	Yamada Y	2018-09-04	Int J Mol Med	Identification of 13 novel susceptibility loci for early-onset myocardial infarction, hypertension, or chronic kidney disease.	Hypertension	3,444 Japanese ancestry cases, 4,636 Japanese ancestry controls	NA	6p21.33	Intergenic	rs769177-G	0.8280000000000001	1E-6		1.2345679		Illumina [31276]	N
607	chr6_mcf_hap5	2932555	2932556	rs7758790	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.33		rs7758790-T	0.774	1E-27				Affymetrix [10369434] (imputed)	N
607	chr6_mcf_hap5	2934832	2934833	rs2256965	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6p21.33		rs2256965-A	0.4188	2E-13		0.0106	[0.0079-0.0133] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
607	chr6_mcf_hap5	2935094	2935095	rs2256974	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.33	NR	rs2256974-A	0.375	2E-25		0.842	[0.81-0.88]	Illumina [11270530] (imputed)	N
607	chr6_mcf_hap5	2935094	2935095	rs2256974	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Tumor necrosis factor receptor 2 levels	21,758 European ancestry individuals	9,173 individuals	6p21.33		rs2256974-A	0.18	3E-10		0.0632	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
607	chr6_mcf_hap5	2935094	2935095	rs2256974	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p21.33	LST1	rs2256974-A	0.173581	3E-16		0.026160087	[0.02-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
607	chr6_mcf_hap5	2935094	2935095	rs2256974	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	6p21.33	LST1	rs2256974-A	0.17355	5E-37		0.039224777	[0.033-0.045] unit increase	Affymetrix [93095623] (imputed)	N
607	chr6_mcf_hap5	2935182	2935183	rs200801362	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	6p21.33	LST1	rs200801362-T	0.839907	4E-13		0.0188461	[0.014-0.024] unit decrease	Affymetrix [12370749]	N
607	chr6_mcf_hap5	2935857	2935857	rs28986170	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FEV1/FVC)	48,943 European ancestry individuals	57,176 European ancestry individuals, 38,199 individuals.	6p21.33	LST1	rs28986170-?	0.752	2E-10	(conditioned on rs2070600, rs9272528)	0.063	[0.043-0.083] unit increase	Affymetrix [27624732] (imputed)	N
607	chr6_mcf_hap5	2936281	2936282	rs1052248	33768542	Liu Y	2021-03-26	Clin Pharmacol Ther	Class II HLA Variants Associate with Risk of Pegaspargase Hypersensitivity.	Asparaginase hypersensitivity in acute lymphoblastic leukemia	798 Native American individuals	NA	6p21.33	NR	rs1052248-A	NR	4E-7		2.31	[NR]	Illumina [NR] (imputed)	N
607	chr6_mcf_hap5	2936281	2936282	rs1052248	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	6p21.33	Intergenic	rs1052248-A	0.2609	2E-8	(MTAG)	0.0146	[0.0095-0.0197] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
607	chr6_mcf_hap5	2936281	2936282	rs1052248	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p21.33	LST1	rs1052248-A	0.28	3E-17		1.05	[1.04-1.06]	Illumina [at least 560000] (imputed)	N
607	chr6_mcf_hap5	2936409	2936410	rs986475	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NCR3	rs986475-G	0.071	1E-31	(Natural cytotoxicity triggering receptor 3, NCR3.3003.29.2)	0.55	[0.45-0.65] unit decrease	Affymetrix [10572788] (imputed)	N
607	chr6_mcf_hap5	2937191	2937192	rs11575841	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	6p21.33	NR	rs11575841-?	NR	5E-20		9.163	NR z score decrease	Illumina [at least 830937] (imputed)	N
607	chr6_mcf_hap5	2937491	2937492	rs11575839	23028341	Yang X	2012-09-13	PLoS Genet	Genome-wide association study for serum complement C3 and C4 levels in healthy Chinese subjects.	Complement C3 and C4 levels	1,999 Han Chinese ancestry male individuals	1,496 Han Chinese ancestry male individuals	6p21.33	HLA-C	rs11575839-A	0.05	1E-54	(Serum level of C4)	0.23	[0.21-0.25] g/L decrease	Illumina [1940245] (imputed)	N
607	chr6_mcf_hap5	2937875	2937876	rs148533164	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.33		rs148533164-G	0.952	3E-15				Affymetrix [10369434] (imputed)	N
607	chr6_mcf_hap5	2937964	2937965	rs28732145	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p21.33	NR	rs28732145-?	NR	2E-11		0.2045	[0.15-0.26] unit increase	Illumina [at least 560000] (imputed)	N
607	chr6_mcf_hap5	2940370	2940371	rs11575837	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6p21.33		rs11575837-?	NR	5E-8		1.20533	[1.14-1.27]	NR [685523]	N
607	chr6_mcf_hap5	2940370	2940371	rs11575837	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.33	NR	rs11575837-T	0.012	8E-13		0.58141	[0.42-0.74] unit increase	Affymetrix [up to 8900000] (imputed)	N
607	chr6_mcf_hap5	2941051	2941052	rs28732146	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	NCR3	rs28732146-A	NR	1E-11		0.0239586	[0.017-0.031] unit decrease	Affymetrix [321016] (imputed)	N
607	chr6_mcf_hap5	2941051	2941052	rs28732146	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	NCR3	rs28732146-A	NR	2E-17		0.0326707	[0.025-0.04] unit decrease	Affymetrix [323123] (imputed)	N
607	chr6_mcf_hap5	2941213	2941214	rs9357135	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	6p21.33		rs9357135-T	0.046397421	1E-19		0.60996497	[0.48-0.74] unit increase	Illumina [13429980] (imputed)	N
607	chr6_mcf_hap5	2941848	2941849	rs2857599	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	NCR3	rs2857599-A	NR	1E-19		0.0348769	[0.027-0.042] unit decrease	Affymetrix [321016] (imputed)	N
607	chr6_mcf_hap5	2941848	2941849	rs2857599	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	6p21.33	Intergenic	rs2857599-G	NR	3E-8		0.0262207	[0.017-0.036] unit increase	Illumina [13519193] (imputed)	N
607	chr6_mcf_hap5	2941863	2941864	rs536378929	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	6p21.33	NCR3	rs536378929-T	0.9236	9E-26		0.0494	[0.04-0.059] unit decrease	Affymetrix [18391927] (imputed)	N
607	chr6_mcf_hap5	2942313	2942314	rs2515920	30226566	Yamada Y	2018-09-04	Int J Mol Med	Identification of 13 novel susceptibility loci for early-onset myocardial infarction, hypertension, or chronic kidney disease.	Hypertension	3,444 Japanese ancestry cases, 4,636 Japanese ancestry controls	NA	6p21.33	NCR3	rs2515920-T	0.827	5E-7		1.2345679		Illumina [31276]	N
607	chr6_mcf_hap5	2942462	2942463	rs3130632	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	NCR3	rs3130632-T	NR	1E-10		0.022096	[0.015-0.029] unit decrease	Affymetrix [319769] (imputed)	N
607	chr6_mcf_hap5	2942462	2942463	rs3130632	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	NCR3	rs3130632-T	NR	9E-10		0.0210507	[0.014-0.028] unit decrease	Affymetrix [319769] (imputed)	N
607	chr6_mcf_hap5	2942462	2942463	rs3130632	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	NCR3	rs3130632-T	NR	7E-11		0.0226077	[0.016-0.029] unit decrease	Affymetrix [321169] (imputed)	N
607	chr6_mcf_hap5	2942465	2942466	rs34744948	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.33	NR	rs34744948-?	NR	4E-11				Affymetrix [~ 8270000] (imputed)	N
607	chr6_mcf_hap5	2942926	2942927	rs2857598	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	NCR3	rs2857598-A	NR	4E-15		0.0338966	[0.025-0.042] unit increase	Affymetrix [323123] (imputed)	N
607	chr6_mcf_hap5	2942926	2942927	rs2857598	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.33	Intergenic	rs2857598-C	NR	7E-8	(women)	0.0362414	[0.023-0.049] unit decrease	Illumina [13520550] (imputed)	N
607	chr6_mcf_hap5	2942926	2942927	rs2857598	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.33	Intergenic	rs2857598-C	NR	5E-11		0.0308295	[0.022-0.04] unit decrease	Illumina [13520550] (imputed)	N
607	chr6_mcf_hap5	2942926	2942927	rs2857598	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	6p21.33	Intergenic	rs2857598-C	NR	9E-20		0.0496215	[0.039-0.06] unit decrease	Illumina [13520550] (imputed)	N
607	chr6_mcf_hap5	2942938	2942939	rs3132452	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	6p21.33	NR	rs3132452-?	NR	2E-7		0.095	[0.059-0.131] unit increase	Illumina [at least 560000] (imputed)	N
607	chr6_mcf_hap5	2943865	2943866	rs2515919	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	NCR3	rs2515919-G	NR	5E-12		0.020055	[0.014-0.026] unit increase	Affymetrix [319769] (imputed)	N
607	chr6_mcf_hap5	2943865	2943866	rs2515919	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	NCR3	rs2515919-G	NR	2E-8		0.0182636	[0.012-0.025] unit increase	Affymetrix [323858] (imputed)	N
607	chr6_mcf_hap5	2943865	2943866	rs2515919	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	NCR3	rs2515919-G	NR	7E-11		0.0189369	[0.013-0.025] unit increase	Affymetrix [319769] (imputed)	N
607	chr6_mcf_hap5	2943865	2943866	rs2515919	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	NCR3	rs2515919-G	NR	2E-10		0.0184288	[0.013-0.024] unit decrease	Affymetrix [321016] (imputed)	N
607	chr6_mcf_hap5	2943865	2943866	rs2515919	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	NCR3	rs2515919-G	NR	1E-28		0.0351117	[0.029-0.041] unit decrease	Affymetrix [323123] (imputed)	N
607	chr6_mcf_hap5	2943865	2943866	rs2515919	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	NCR3	rs2515919-G	NR	8E-13		0.0210432	[0.015-0.027] unit increase	Affymetrix [321169] (imputed)	N
607	chr6_mcf_hap5	2943865	2943866	rs2515919	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	6p21.33	Intergenic	rs2515919-A	0.6258	1E-10	(MTAG)	0.0119	[0.0082-0.0156] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
607	chr6_mcf_hap5	2943865	2943866	rs2515919	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	6p21.33	Intergenic	rs2515919-A	0.6255	3E-16	(MTAG)	0.0139	[0.011-0.017] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
607	chr6_mcf_hap5	2943865	2943866	rs2515919	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6p21.33	Intergenic	rs2515919-A	0.63	3E-16	(MTAG)	0.0111	[0.0084-0.0138] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
607	chr6_mcf_hap5	2944519	2944520	rs2844480	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p21.33	NR	rs2844480-?	NR	2E-18		0.0887	[0.069-0.108] unit increase	Illumina [at least 560000] (imputed)	N
607	chr6_mcf_hap5	2945008	2945009	rs150379130	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	NCR3	rs150379130-T	NR	4E-9		0.0270941	[0.018-0.036] unit decrease	Affymetrix [323123] (imputed)	N
607	chr6_mcf_hap5	2945235	2945236	rs111728624	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	NCR3	rs111728624-C	NR	3E-11		0.0281508	[0.02-0.036] unit increase	Affymetrix [319769] (imputed)	N
607	chr6_mcf_hap5	2945235	2945236	rs111728624	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.33	NCR3	rs111728624-C	NR	2E-8		0.0241088	[0.016-0.032] unit increase	Affymetrix [321114] (imputed)	N
607	chr6_mcf_hap5	2945235	2945236	rs111728624	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	NCR3	rs111728624-C	NR	1E-11		0.0289838	[0.021-0.037] unit increase	Affymetrix [321169] (imputed)	N
607	chr6_mcf_hap5	2945867	2945868	rs3130631	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p21.33	NR	rs3130631-?	NR	2E-9		0.0861	[0.058-0.115] unit decrease	Illumina [at least 560000] (imputed)	N
607	chr6_mcf_hap5	2946539	2946540	rs17200816	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	NCR3	rs17200816-T	NR	2E-11		0.0283425	[0.02-0.037] unit increase	Affymetrix [319769] (imputed)	N
607	chr6_mcf_hap5	2947120	2947121	rs2857596	32752121	Nedoszytko B	2020-07-31	Int J Mol Sci	Results from a Genome-Wide Association Study (GWAS) in Mastocytosis Reveal New Gene Polymorphisms Associated with WHO Subgroups.	Systemic mastocytosis	93 European ancestry cases, 5,606 European ancestry controls	NA	6p21.33	NRC3	rs2857596-C	0.2394	2E-10		2.582	[2.28-2.88]	Illumina [281811]	N
607	chr6_mcf_hap5	2960205	2960206	rs3993747	31263887	Adams MJ	2019-07-01	Int J Epidemiol	Factors associated with sharing e-mail information and mental health survey participation in large population cohorts.	Mental health study participation (completed survey)	122,647 British ancestry cases, 248,781 British ancestry controls	NA	6p21.33	NR	rs3993747-A	0.65	1E-9		1.0319917	[1.02-1.04]	NR [16367095] (imputed)	N
607	chr6_mcf_hap5	2960237	2960238	rs2471960	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Non-Hodgkin's lymphoma	2,400 European ancestry cases, 410,350 European ancestry controls	NA	6p21.33		rs2471960-A	NR	1E-11		1.2300123	NR	Affymetrix [7846216] (imputed)	N
607	chr6_mcf_hap5	2960735	2960736	rs542914466	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.33	NR	rs542914466-A	0.009	2E-37	(conditional)	18.321	[17.88-18.77]	Illumina [11270530] (imputed)	N
607	chr6_mcf_hap5	2961718	2961719	rs3132451	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	AIF1	rs3132451-C	NR	3E-14		0.0290333	[0.022-0.037] unit decrease	Affymetrix [323858] (imputed)	N
607	chr6_mcf_hap5	2961718	2961719	rs3132451	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	AIF1	rs3132451-C	NR	1E-12		0.0272438	[0.02-0.035] unit decrease	Affymetrix [127266] (imputed)	N
607	chr6_mcf_hap5	2961718	2961719	rs3132451	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	AIF1	rs3132451-C	NR	3E-15		0.029579	[0.022-0.037] unit increase	Affymetrix [323123] (imputed)	N
607	chr6_mcf_hap5	2961718	2961719	rs3132451	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	AIF1	rs3132451-C	0.217	7E-56	(cAMP-specific 3',5'-cyclic phosphodiesterase 4D, PDE4D.5255.22.3)	0.46	[0.4-0.52] unit decrease	Affymetrix [10572788] (imputed)	N
607	chr6_mcf_hap5	2961718	2961719	rs3132451	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	AIF1	rs3132451-C	0.217	4E-34	(T-cell surface protein tactile, CD96.9735.44.3)	0.36	[0.3-0.42] unit decrease	Affymetrix [10572788] (imputed)	N
607	chr6_mcf_hap5	2961718	2961719	rs3132451	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	AIF1	rs3132451-C	0.217	2E-55	(Glutamate receptor 4, GRIA4.10760.107.3)	0.46	[0.4-0.52] unit decrease	Affymetrix [10572788] (imputed)	N
607	chr6_mcf_hap5	2961718	2961719	rs3132451	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	6p21.33	NCR3, AIF1	rs3132451-G	NR	3E-12		0.171592	[0.12-0.22] unit decrease	Illumina [at least 950000] (imputed)	N
607	chr6_mcf_hap5	2962848	2962849	rs2844475	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	AIF1	rs2844475-A	NR	2E-8		0.0183217	[0.012-0.025] unit increase	Affymetrix [323858] (imputed)	N
607	chr6_mcf_hap5	2962848	2962849	rs2844475	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	AIF1	rs2844475-A	NR	5E-13		0.0229918	[0.017-0.029] unit decrease	Affymetrix [323123] (imputed)	N
607	chr6_mcf_hap5	2963005	2963006	rs2736182	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	6p21.33	AIF1	rs2736182-A	0.019095	6E-9		0.0493347	[0.033-0.066] unit increase	Affymetrix [93095623] (imputed)	N
607	chr6_mcf_hap5	2963005	2963006	rs2736182	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	6p21.33	AIF1	rs2736182-A	0.019095	2E-13		0.06039303	[0.044-0.077] unit decrease	Affymetrix [93095623] (imputed)	N
607	chr6_mcf_hap5	2963534	2963535	rs34451818	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.33		rs34451818-G	NR	1E-9		1.2642225	[1.17-1.36]	Affymetrix [7846216] (imputed)	N
607	chr6_mcf_hap5	2965438	2965439	rs144309021	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	6p21.33	PRRC2A	rs144309021-T	0.1234	1E-9	(S1P d16:1)	0.1184	[0.08-0.156] unit decrease	Illumina [~ 47000000] (imputed)	N
607	chr6_mcf_hap5	2966153	2966154	rs2857695	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	AIF1	rs2857695-C	NR	2E-15		0.0312768	[0.024-0.039] unit increase	Affymetrix [323123] (imputed)	N
607	chr6_mcf_hap5	2966735	2966736	rs140054334	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.33	NR	rs140054334-T	0.017	7E-11		0.45969	[0.32-0.6] unit increase	Affymetrix [up to 8900000] (imputed)	N
607	chr6_mcf_hap5	2966735	2966736	rs140054334	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.33	NR	rs140054334-T	0.017	3E-6	(men)	0.387194	[0.23-0.55] unit increase	Affymetrix [up to 8900000] (imputed)	N
607	chr6_mcf_hap5	2967254	2967255	rs2736176	32109421	Li C	2020-02-20	Am J Hum Genet	Genome-Wide Association Analysis in Humans Links Nucleotide Metabolism to Leukocyte Telomere Length.	Leukocyte telomere length	78,592 European ancestry individuals	NA	6p21.33	PRRC2A	rs2736176-C	0.31	4E-10		0.035	[0.023-0.047] unit increase	Affymetrix, Illumina, Perlegen [up to 30071938] (imputed)	N
607	chr6_mcf_hap5	2967563	2967564	rs2857694	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PRRC2A	rs2857694-T	NR	2E-9		0.0174435	[0.012-0.023] unit increase	Affymetrix [319769] (imputed)	N
607	chr6_mcf_hap5	2967563	2967564	rs2857694	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	PRRC2A	rs2857694-T	NR	4E-8		0.0161057	[0.01-0.022] unit increase	Affymetrix [319769] (imputed)	N
607	chr6_mcf_hap5	2968073	2968074	rs2857693	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	PRRC2A	rs2857693-T	NR	2E-11		0.019953	[0.014-0.026] unit increase	Affymetrix [321169] (imputed)	N
607	chr6_mcf_hap5	2968073	2968074	rs2857693	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	6p21.33	BAT2	rs2857693-T	0.38	3E-29		0.034	[0.028-0.04] unit decrease	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
607	chr6_mcf_hap5	2968956	2968957	rs3115665	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic glomerulonephritis	566 European ancestry cases, 475,255 European ancestry controls, 210 East Asian ancestry cases, 174,345 East Asian ancestry controls	NA	6p21.33		rs3115665-G	NR	3E-8		0.929	[0.6-1.26] unit increase	Affymetrix, Illumina [25844108] (imputed)	N
607	chr6_mcf_hap5	2969368	2969369	rs2844472	33563987	Tyrrell J	2021-02-09	Nat Commun	Genetic predictors of participation in optional components of UK Biobank.	Acceptance of an invitation to participate in a mental health questionnaire	146,074 European ancestry cases, 148,713 European ancestry controls	NA	6p21.33	NR	rs2844472-A	0.65	2E-9		1.03	[1.02, 1.04]	Affymetrix [39302896] (imputed)	N
607	chr6_mcf_hap5	2969427	2969428	rs2736173	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p21.33	BAT2	rs2736173-A	0.03	2E-7	(EA)	3.58	[2.14-5.98]	Illumina [up to 547389]	N
607	chr6_mcf_hap5	2970590	2970591	rs2736172	24132900	Kanazawa T	2013-10-01	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of atypical psychosis.	Psychosis (atypical)	47 Japanese ancestry cases, 882 Japanese ancestry controls	NA	6p21.33	TNF, MICB	rs2736172-?		4E-6				Affymetrix [545513]	N
607	chr6_mcf_hap5	2971605	2971606	rs2260051	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		6p21.33	PRRC2A	rs2260051-A	0.438452	2E-17		0.011743	[0.009-0.0144] unit decrease	Affymetrix [12370749]	N
607	chr6_mcf_hap5	2971605	2971606	rs2260051	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	Waist circumference	291,107 British ancestry individuals	NA	6p21.33	PRRC2A	rs2260051-A	0.44273999	2E-13		0.230643	[0.17-0.29] unit decrease	Affymetrix [9463307] (imputed)	N
607	chr6_mcf_hap5	2971605	2971606	rs2260051	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	6p21.33	NR	rs2260051-A	0.4422	8E-15		0.019329904	[0.014-0.024] unit decrease	Affymetrix [10549349] (imputed)	N
607	chr6_mcf_hap5	2971605	2971606	rs2260051	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	6p21.33	PRRC2A	rs2260051-A	0.4425	1E-15		0.002	[0.0014-0.0026] unit increase	Affymetrix [15275733] (imputed)	N
607	chr6_mcf_hap5	2971605	2971606	rs2260051	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	223,215 British ancestry individuals	111,610 British ancestry individuals	6p21.33	PRRC2A	rs2260051-T	0.56	7E-12		0.002	[0.0014-0.0026] unit decrease	Affymetrix [15275733] (imputed)	N
607	chr6_mcf_hap5	2972507	2972508	rs3135044	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	6p21.33	NR	rs3135044-?		9E-11		0.0145909	[0.01-0.019] unit decrease	Affymetrix [19400418] (imputed)	N
607	chr6_mcf_hap5	2975174	2975175	rs2736171	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PRRC2A	rs2736171-G	NR	3E-9		0.0173452	[0.012-0.023] unit decrease	Affymetrix [321016] (imputed)	N
607	chr6_mcf_hap5	2975569	2975570	rs1046080	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Sex hormone-binding globulin levels	389,354 European ancestry individuals	NA	6p21.33		rs1046080-A	0.72	4E-8		0.013	nmol/L decrease	NR [NR] (imputed)	N
607	chr6_mcf_hap5	2975569	2975570	rs1046080	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	6p21.33		rs1046080-A	0.72	2E-18				NR [NR] (imputed)	N
607	chr6_mcf_hap5	2975569	2975570	rs1046080	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	6p21.33		rs1046080-A	0.72	4E-22		0.016	% increase	NR [NR] (imputed)	N
607	chr6_mcf_hap5	2975569	2975570	rs1046080	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Aspartate aminotransferase levels	424,778 European ancestry individuals	NA	6p21.33		rs1046080-A	0.72	2E-7		0.011	U/L decrease	NR [NR] (imputed)	N
607	chr6_mcf_hap5	2975569	2975570	rs1046080	32534018	Liu X	2020-06-10	Brain Behav Immun	Genetic factors underlying the bidirectional relationship between autoimmune and mental disorders - findings from a Danish population-based study.	Autoimmune traits	1,383 Danish ancestry cases, 62,656 Danish ancestry controls	NA	6p21.33	NR	rs1046080-C	0.26	2E-12		0.72	[0.65-0.79]	NR [7721839] (imputed)	N
607	chr6_mcf_hap5	2975569	2975570	rs1046080	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	6p21.33	NR	rs1046080-?	NR	5E-8		0.12785	[0.082-0.174] unit increase	Affymetrix [7794483] (imputed)	N
607	chr6_mcf_hap5	2975569	2975570	rs1046080	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	6p21.33	NR	rs1046080-?	NR	3E-6	(male)	0.13448	[0.078-0.191] unit increase	Affymetrix [7794483] (imputed)	N
607	chr6_mcf_hap5	2975569	2975570	rs1046080	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite ratios	Up to 5,591 European ancestry individuals	Up to 1,767 European ancestry individuals	6p21.33	PRRC2A	rs1046080-A	0.74	1E-14	(X-11444/X-11470)	0.027	[0.019-0.035] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
607	chr6_mcf_hap5	2975825	2975826	rs3132450	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PRRC2A	rs3132450-G	NR	7E-11		0.0268129	[0.019-0.035] unit decrease	Affymetrix [319769] (imputed)	N
607	chr6_mcf_hap5	2975825	2975826	rs3132450	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	PRRC2A	rs3132450-G	NR	8E-12		0.0285009	[0.02-0.037] unit decrease	Affymetrix [321169] (imputed)	N
607	chr6_mcf_hap5	2977387	2977388	rs3130623	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	6p21.33		rs3130623-T	NR	8E-24		0.0277	[0.022-0.033] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
607	chr6_mcf_hap5	2977395	2977396	rs2736163	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein APOM	5,364 Icelandic ancestry individuals	NA	6p21.33		rs2736163-T	0.03403	2E-15		0.413547	[0.31-0.52] unit decrease	Illumina [7506463] (imputed)	N
607	chr6_mcf_hap5	2977440	2977441	rs2242660	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cervical cancer	6,563 European ancestry cases, 410,350 European ancestry controls	NA	6p21.33		rs2242660-G	NR	2E-7		1.1015	NR	Affymetrix [7846216] (imputed)	N
607	chr6_mcf_hap5	2981530	2981531	rs3115663	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.33	BAT2	rs3115663-G	0.1812	7E-57		3.04	[NR]	Illumina [242824]	N
607	chr6_mcf_hap5	2982654	2982655	rs1046089	23894747	Aberg KA	2013-02-01	JAMA Psychiatry	A comprehensive family-based replication study of schizophrenia genes.	Schizophrenia	11,185 European ancestry cases, 10,768 European ancestry controls	1,262 African American ancestry individuals, 2,740 European ancestry individuals, 2,296 Asian ancestry individuals	6p21.33	PRRC2A, BAG6	rs1046089-G	0.34	4E-6	(EA)	1.3	[NR]	NR [1085772] (imputed)	N
607	chr6_mcf_hap5	2982654	2982655	rs1046089	23307926	Perry JR	2013-01-09	Hum Mol Genet	A genome-wide association study of early menopause and the combined impact of identified variants.	Menopause (age at onset)	3,493 European ancestry cases, 13,598 European ancestry controls	3,412 European ancestry cases, 4,928 European ancestry controls	6p21.33	NR	rs1046089-A	0.3492	4E-11		0.1919	[0.13-0.25] years increase	NR [NR]	N
607	chr6_mcf_hap5	2982654	2982655	rs1046089	22267201	Stolk L	2012-01-22	Nat Genet	Meta-analyses identify 13 loci associated with age at menopause and highlight DNA repair and immune pathways.	Menopause (age at onset)	38,968 European ancestry female individuals	Up to 14,435 European ancestry female individuals	6p21.33	PRRC2A	rs1046089-A	0.353	2E-16		0.213	[0.16-0.26] years decrease	Affymetrix, Illumina [2551160] (imputed)	N
607	chr6_mcf_hap5	2983278	2983279	rs2261033	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PRRC2A	rs2261033-G	NR	3E-12		0.0196963	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
607	chr6_mcf_hap5	2983278	2983279	rs2261033	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	PRRC2A	rs2261033-G	NR	2E-12		0.0222106	[0.016-0.028] unit increase	Affymetrix [323858] (imputed)	N
607	chr6_mcf_hap5	2983278	2983279	rs2261033	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	PRRC2A	rs2261033-G	NR	5E-11		0.0185935	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
607	chr6_mcf_hap5	2983278	2983279	rs2261033	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	PRRC2A	rs2261033-G	NR	2E-10		0.0200207	[0.014-0.026] unit increase	Affymetrix [127266] (imputed)	N
607	chr6_mcf_hap5	2983278	2983279	rs2261033	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PRRC2A	rs2261033-G	NR	2E-11		0.0189094	[0.013-0.024] unit decrease	Affymetrix [321016] (imputed)	N
607	chr6_mcf_hap5	2983278	2983279	rs2261033	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	PRRC2A	rs2261033-G	NR	3E-24		0.0314057	[0.025-0.037] unit decrease	Affymetrix [323123] (imputed)	N
607	chr6_mcf_hap5	2983278	2983279	rs2261033	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	PRRC2A	rs2261033-G	NR	2E-12		0.0202126	[0.015-0.026] unit increase	Affymetrix [321169] (imputed)	N
607	chr6_mcf_hap5	2983278	2983279	rs2261033	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.33	PRRC2A	rs2261033-A	0.5235	9E-11		0.0461	[0.032-0.06] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
607	chr6_mcf_hap5	2984042	2984043	rs35502919	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	PRRC2A	rs35502919-A	NR	5E-11		0.0387702	[0.027-0.05] unit increase	Affymetrix [321169] (imputed)	N
607	chr6_mcf_hap5	2984042	2984043	rs35502919	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	6p21.33	NR	rs35502919-?		9E-14	(AGER)	0.631	[NR] unit decrease	Illumina [NR]	N
607	chr6_mcf_hap5	2984278	2984279	rs10885	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p21.33	PRRC2A	rs10885-T		2E-36		0.035	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
607	chr6_mcf_hap5	2984581	2984582	rs34137317	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first birth	542,901 European ancestry individuals	NA	6p21.33	PRRC2A	rs34137317-T	0.0277	6E-10		0.2473	[0.17-0.33] unit increase	NR [9744772] (imputed)	N
607	chr6_mcf_hap5	2984886	2984887	rs2736155	34741163	Eijsbouts C	2021-11-05	Nat Genet	Genome-wide analysis of 53,400 people with irritable bowel syndrome highlights shared genetic pathways with mood and anxiety disorders.	Irritable bowel syndrome	53,400 European ancestry cases, 433,201 European ancestry controls	205,252 European ancestry cases, 1,384,055 European ancestry controls	6p21.33	NR	rs2736155-C	0.4758	3E-12		0.022300169	[0.016-0.029] unit increase	Illumina [9885498] (imputed)	N
607	chr6_mcf_hap5	2984886	2984887	rs2736155	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	PRRC2A	rs2736155-C	NR	6E-10		0.0194264	[0.013-0.026] unit increase	Affymetrix [323858] (imputed)	N
607	chr6_mcf_hap5	2984886	2984887	rs2736155	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	PRRC2A	rs2736155-C	NR	8E-9		0.0180894	[0.012-0.024] unit increase	Affymetrix [127266] (imputed)	N
607	chr6_mcf_hap5	2984886	2984887	rs2736155	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Anxiety	at least 23,606 European ancestry cases, at least 113,351 European ancestry controls	624,615 European ancestry cases, 1,310,854 European ancestry controls	6p21.33	PRRC2A	rs2736155-G	0.4811	5E-18		0.019583363	[0.015-0.025] unit decrease	NR [9417325] (imputed)	N
607	chr6_mcf_hap5	2984886	2984887	rs2736155	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p21.33	NR	rs2736155-C	0.478	6E-7		0.0059	[0.0035-0.0083] unit increase	NR [7666894] (imputed)	N
607	chr6_mcf_hap5	2985135	2985136	rs7889	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	6p21.33	BAG6	rs7889-C	0.3609	3E-8		0.012577614	[0.0082-0.017] unit increase	Affymetrix [11514654] (imputed)	N
607	chr6_mcf_hap5	2985135	2985136	rs7889	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	6p21.33	PRRC2A	rs7889-C	0.3904	4E-14		0.2499	[0.19-0.31] mmHg decrease	Affymetrix [NR] (imputed)	N
607	chr6_mcf_hap5	2986062	2986063	rs2077491	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	BAG6	rs2077491-C	NR	8E-13		0.0219509	[0.016-0.028] unit decrease	Affymetrix [323123] (imputed)	N
607	chr6_mcf_hap5	2986062	2986063	rs2077491	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	BAG6	rs2077491-C	NR	2E-15		0.0226711	[0.017-0.028] unit increase	Affymetrix [321169] (imputed)	N
607	chr6_mcf_hap5	2986062	2986063	rs2077491	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA	6p21.33	NR	rs2077491-?	NR	5E-6		0.0322	[0.018-0.046] unit decrease	Illumina [at least 560000] (imputed)	N
607	chr6_mcf_hap5	2986353	2986357	rs757744062	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.33	BAG6	rs757744062-CAAAA	0.8204	4E-8		0.0522	[0.034-0.071] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
607	chr6_mcf_hap5	2986442	2986443	rs2178899	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	6p21.33	NA	rs2178899-A	0.8833	5E-23		0.0243	[0.019-0.029] unit increase	NR [~ 27400000] (imputed)	N
607	chr6_mcf_hap5	2986736	2986737	rs750332	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls	NA	6p21.33	BAG6	rs750332-C	0.180658	4E-14		0.055028614	[0.041-0.069] unit decrease	Affymetrix [7288503] (imputed)	N
607	chr6_mcf_hap5	2990211	2990212	rs1077393	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	6p21.33	HLA-C	rs1077393-A	0.477302	2E-8		5.65	z score decrease	NR [10847151] (imputed)	N
607	chr6_mcf_hap5	2990211	2990212	rs1077393	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling worry	372,869 European ancestry individuals	NA	6p21.33	HLA-C	rs1077393-A	0.477302	4E-10		6.267	unit decrease	NR [10847151] (imputed)	N
607	chr6_mcf_hap5	2993411	2993412	rs3130048	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6p21.33	NR	rs3130048-?	NR	1E-11				Affymetrix [~ 8270000] (imputed)	N
607	chr6_mcf_hap5	2993411	2993412	rs3130048	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	6p21.33	NA	rs3130048-T	0.7315	2E-20		0.0169	[0.013-0.02] unit decrease	NR [~ 27400000] (imputed)	N
607	chr6_mcf_hap5	2996039	2996040	rs805303	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Systolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	6p21.33	BAT2, BAT5	rs805303-A	0.382	6E-6	(EA, initial)	0.368	[0.21-0.53] unit decrease	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
607	chr6_mcf_hap5	2996039	2996040	rs805303	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Diastolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	6p21.33	BAT2, BAT5	rs805303-A	0.382	4E-6	(EA, initial)	0.23	[0.13-0.33] unit decrease	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
607	chr6_mcf_hap5	2996039	2996040	rs805303	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Systolic blood pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	6p21.33	BAT2, BAT5	rs805303-A	0.3958	3E-6	(EA)	0.0174	unit decrease	Illumina [242296]	N
607	chr6_mcf_hap5	2996039	2996040	rs805303	21909115	Ehret GB	2011-09-11	Nature	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Systolic blood pressure	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	6p21.33	BAT2, BAT5	rs805303-G	0.61	2E-11		0.376	[NR] mmHg increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
607	chr6_mcf_hap5	2996039	2996040	rs805303	21909115	Ehret GB	2011-09-11	Nature	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Hypertension	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	6p21.33	BAT2, BAT5	rs805303-G	0.61	1E-10		0.054	[NR] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
607	chr6_mcf_hap5	2996039	2996040	rs805303	21909115	Ehret GB	2011-09-11	Nature	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Diastolic blood pressure	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	6p21.33	BAT2, BAT5	rs805303-G	0.61	3E-11		0.228	[NR] mmHg increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
607	chr6_mcf_hap5	2999807	2999808	rs2736201	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6p21.33	BAG6	rs2736201-C	0.156392	7E-12		0.036189657	[0.026-0.047] unit increase	Affymetrix [93095623] (imputed)	N
607	chr6_mcf_hap5	2999807	2999808	rs2736201	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	6p21.33	BAG6	rs2736201-C	0.156492	3E-71		0.06142095	[0.055-0.068] unit increase	Affymetrix [93095623] (imputed)	N
607	chr6_mcf_hap5	3000199	3000200	rs3117582	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Squamous cell lung carcinoma	8,350 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	6p21.33	NR	rs3117582-G	NR	2E-9		0.77	[0.71-0.84]	NR [NR] (imputed)	N
607	chr6_mcf_hap5	3000199	3000200	rs3117582	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Non-small cell lung cancer	27,120 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	6p21.33	NR	rs3117582-G	NR	2E-6		0.87	[0.82-0.92]	NR [NR] (imputed)	N
607	chr6_mcf_hap5	3000199	3000200	rs3117582	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p21.33	BAT3, APOM	rs3117582-C	0.34	1E-30				Illumina [118177]	N
607	chr6_mcf_hap5	3000199	3000200	rs3117582	19836008	Landi MT	2009-10-15	Am J Hum Genet	A genome-wide association study of lung cancer identifies a region of chromosome 5p15 associated with risk for adenocarcinoma.	Lung adenocarcinoma	5,739 European ancestry cases, 5,848 European ancestry controls	7,561 European ancestry cases, 13,818 European ancestry controls	6p21.33	APOM, BAT3	rs3117582-C	0.10	5E-12		1.22	[1.15-1.29]	Illumina [515922]	N
607	chr6_mcf_hap5	3000199	3000200	rs3117582	19654303	Broderick P	2009-08-04	Cancer Res	Deciphering the impact of common genetic variation on lung cancer risk: a genome-wide association study.	Lung cancer	1,952 European ancestry cases, 1,438 European ancestry controls	2,465 European ancestry cases, 3,005 European ancestry controls, 3,143 individuals, 3,762 individuals	6p21.33	BAT3	rs3117582-?	NR	4E-10		1.24	[1.16-1.33]	Illumina [511919]	N
607	chr6_mcf_hap5	3000199	3000200	rs3117582	18978787	Wang Y	2008-11-02	Nat Genet	Common 5p15.33 and 6p21.33 variants influence lung cancer risk.	Lung cancer	5,095 European ancestry cases, 5,200 European ancestry controls	2,448 European ancestry cases, 2,983 European ancestry controls	6p21.33	BAT3, MSH5	rs3117582-C	NR	5E-10		1.24	[1.16-1.33]	Illumina [223891]	N
607	chr6_mcf_hap5	3001722	3001723	rs1266078	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	APOM	rs1266078-G	0.032	3E-12	(Apolipoprotein M, APOM.10445.20.3)	0.49	[0.35-0.63] unit decrease	Affymetrix [10572788] (imputed)	N
607	chr6_mcf_hap5	3002285	3002286	rs805297	21844665	Hu HJ	2011-08-16	Exp Mol Med	Common variants at the promoter region of the APOM confer a risk of rheumatoid arthritis.	Rheumatoid arthritis	100 Korean ancestry cases, 600 Korean ancestry controls	578 Korean ancestry cases, 711 Korean ancestry controls	6p21.33	APOM	rs805297-A	0.36	3E-10		1.56	[1.36-1.80]	Affymetrix [300909]	N
607	chr6_mcf_hap5	3004144	3004145	rs113947529	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ISG15	5,349 Icelandic ancestry individuals	NA	6p21.33		rs113947529-T	0.01503	5E-16		0.622819	[0.47-0.77] unit decrease	Illumina [7506463] (imputed)	N
607	chr6_mcf_hap5	3007792	3007793	rs805263	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p21.33	C6orf47	rs805263-C	0.026972	3E-12		0.049836818	[0.036-0.064] unit increase	Affymetrix [93095623] (imputed)	N
607	chr6_mcf_hap5	3008076	3008077	rs148844907	33608531	Wu Y	2021-02-19	Nat Commun	GWAS of peptic ulcer disease implicates Helicobacter pylori infection, other gastrointestinal disorders and depression.	Inflammatory bowel disease	7,045 European ancestry cases, 449,282 European ancestry controls	NA	6p21.33	NR	rs148844907-T	0.99	1E-40		0.47	[NR]	NR [8546065] (imputed)	N
607	chr6_mcf_hap5	3008076	3008077	rs148844907	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p21.33	C6orf47	rs148844907-A	0.01	2E-12		1.92	[1.74-2.12]	Illumina [at least 560000] (imputed)	N
607	chr6_mcf_hap5	3008412	3008413	rs805262	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (mother's age at death or mother's attained age)	up to 699,000 individuals	NA	6p21.33	NR	rs805262-G		7E-7				Illumina [458525]	N
607	chr6_mcf_hap5	3010510	3010511	rs805260	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	GPANK1	rs805260-G	NR	8E-13		0.0307796	[0.022-0.039] unit decrease	Affymetrix [323123] (imputed)	N
607	chr6_mcf_hap5	3011013	3011014	rs76072474	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	6p21.33	NR	rs76072474-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
607	chr6_mcf_hap5	3011013	3011014	rs76072474	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	6p21.33	NR	rs76072474-?	NR	1E-11				Affymetrix [~ 8270000] (imputed)	N
607	chr6_mcf_hap5	3011813	3011814	rs3130618	25344690	Feenstra B	2014-10-26	Nat Genet	Common variants associated with general and MMR vaccine-related febrile seizures.	Febrile seizures (MMR vaccine-related)	929 European ancestry cases, 4,118 European ancestry controls	Up to 408 European ancestry cases, Up to 1,645 European ancestry controls	6p21.33	GPANK1	rs3130618-C	0.79	2E-7		1.34	[1.20-1.49]	Illumina [8129524] (imputed)	N
607	chr6_mcf_hap5	3011813	3011814	rs3130618	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.33	BAT4	rs3130618-A	0.1811	2E-56		3.03	[NR]	Illumina [242824]	N
608	chr6_mcf_hap5	3015622	3015623	rs115820082	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	CSNK2B, CSNK2B-LY6G5B-1181	rs115820082-G	NR	4E-12		0.0902636	[0.065-0.116] unit decrease	Affymetrix [321016] (imputed)	N
608	chr6_mcf_hap5	3015710	3015711	rs3117578	31375628	Tengvall K	2019-08-02	Proc Natl Acad Sci U S A	Molecular mimicry between Anoctamin 2 and Epstein-Barr virus nuclear antigen 1 associates with multiple sclerosis risk.	Anti-anoctamin 2 antibody levels	11,936 European ancestry individuals	NA	6p21.33	NR	rs3117578-A	NR	2E-7		0.063	[0.034-0.092] unit increase	Illumina [615763]	N
608	chr6_mcf_hap5	3016421	3016422	rs9267531	26316170	Demirci FY	2015-08-28	Arthritis Rheumatol	Identification of a New Susceptibility Locus for Systemic Lupus Erythematosus on Chromosome 12 in Individuals of European Ancestry.	Systemic lupus erythematosus	661 European ancestry cases, 487 European ancestry controls	4,467 European ancestry cases, 9,114 European ancestry controls	6p21.33	CSNK2B	rs9267531-?	NR	8E-8				Affymetrix [up to 700598]	N
608	chr6_mcf_hap5	3016421	3016422	rs9267531	25827949	Kunz M	2015-05-04	Exp Dermatol	Genome-wide association study identifies new susceptibility loci for cutaneous lupus erythematosus.	Cutaneous lupus erythematosus	151 European ancestry cases, 1,288 European ancestry controls	219 European ancestry cases, 262 European ancestry controls	6p21.33	CSNK2B, MSH5, MICA, MICB	rs9267531-G	0.1	3E-14		2.62	[1.93-3.54]	Affymetrix [906600]	N
608	chr6_mcf_hap5	3017857	3017858	rs805268	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p21.33		rs805268-A	0.969	9E-19				Affymetrix [10369434] (imputed)	N
608	chr6_mcf_hap5	3030873	3030874	rs9267536	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6p21.33	BAT5	rs9267536-?	NR	6E-6	(TAG 52:6)	0.34227857	[0.19-0.49] unit increase	Affymetrix [at least 2500000] (imputed)	N
608	chr6_mcf_hap5	3045130	3045131	rs805273	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	ABHD16A, XXbac-BPG32J3.20, MIR4646	rs805273-A	0.06820461	5E-16	(Complement C4)	0.699	[0.53-0.87] unit increase	Affymetrix [509946]	N
608	chr6_mcf_hap5	3049176	3049177	rs1266071	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	6p21.33	ABHD16A, XXbac-BPG32J3.20	rs1266071-T	0.107214	4E-14		0.027769113	[0.021-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
608	chr6_mcf_hap5	3051948	3051949	rs34406901	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	6p21.33	XXbac-BPG32J3.20	rs34406901-G	0.0566	7E-15		0.039119102	[0.029-0.049] unit increase	Affymetrix [93095623] (imputed)	N
608	chr6_mcf_hap5	3053116	3053117	rs9267546	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LIPA	5,367 Icelandic ancestry individuals	NA	6p21.33		rs9267546-A	0.08009	2E-15		0.274526	[0.21-0.34] unit increase	Illumina [7506463] (imputed)	N
608	chr6_mcf_hap5	3055445	3055446	rs2242653	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	6p21.33	NR	rs2242653-?	NR	3E-10	(MIC-A)	0.545677	[0.38-0.71] unit decrease	Illumina [11901634] (imputed)	N
608	chr6_mcf_hap5	3055665	3055666	rs9267548	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p21.33	NR	rs9267548-?	NR	5E-9		0.1189	[0.079-0.159] unit decrease	Illumina [at least 560000] (imputed)	N
608	chr6_mcf_hap5	3059145	3059146	rs805285	33941608	Khan A	2021-05-03	J Am Soc Nephrol	Medical Records-Based Genetic Studies of the Complement System.	Complement C4 levels	3,247 European ancestry individuals, 600 African ancestry individuals, 151 East Asian ancestry individuals	NA	6p21.33	C4	rs805285-C	0.32	1E-14		0.19	[0.15-0.22] unit increase	NR [NR] (imputed)	N
608	chr6_mcf_hap5	3059145	3059146	rs805285	33941608	Khan A	2021-05-03	J Am Soc Nephrol	Medical Records-Based Genetic Studies of the Complement System.	Complement C4 levels	3,247 European ancestry individuals, 600 African ancestry individuals, 151 East Asian ancestry individuals	NA	6p21.33	C4	rs805285-C	0.25	2E-10	(EA)	0.18	[0.14-0.22] unit increase	NR [NR] (imputed)	N
608	chr6_mcf_hap5	3066179	3066180	rs15574	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking initiation (ever regular vs never regular)	up to 433,216 European ancestry individuals	NA	6p21.33	LY6G6C	rs15574-A	0.194	7E-9		0.0159	[0.011-0.021] unit increase	Illumina [~ 250000] (imputed)	N
608	chr6_mcf_hap5	3067899	3067900	rs805294	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.33		rs805294-A	0.644	4E-13				Affymetrix [10369434] (imputed)	N
608	chr6_mcf_hap5	3068200	3068201	rs805293	31879980	German CA	2019-12-26	Genet Epidemiol	Ordered multinomial regression for genetic association analysis of ordinal phenotypes at Biobank scale.	Hypertension	30,822 British ancestry normal blood pressure individuals, 25,242 British ancestry elevated blood pressure individuals, 50,461 British ancestry stage 1 hypertension individuals, 75,286 British ancestry stage 2 hypertension individuals, 3,754 British ancestry hypertension crisis individuals	NA	6p21.33	MPIG6B	rs805293-?	NR	3E-12		0.0433015	NR unit decrease	Affymetrix [464137]	N
608	chr6_mcf_hap5	3068200	3068201	rs805293	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	6p21.33	NR	rs805293-A	0.46	8E-9		0.00643097	[0.0042-0.0086] unit decrease	NR [9732723] (imputed)	N
608	chr6_mcf_hap5	3071339	3071340	rs453098	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SEMA6C	5,362 Icelandic ancestry individuals	NA	6p21.33		rs453098-A	0.07505	1E-13		0.264219	[0.19-0.33] unit increase	Illumina [7506463] (imputed)	N
608	chr6_mcf_hap5	3071339	3071340	rs453098	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PCDHGA11	5,360 Icelandic ancestry individuals	NA	6p21.33		rs453098-A	0.07505	4E-12		0.237269	[0.17-0.3] unit increase	Illumina [7506463] (imputed)	N
608	chr6_mcf_hap5	3071339	3071340	rs453098	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HSPA1A	5,360 Icelandic ancestry individuals	NA	6p21.33		rs453098-A	0.07505	8E-15		0.272702	[0.2-0.34] unit increase	Illumina [7506463] (imputed)	N
608	chr6_mcf_hap5	3072068	3072069	rs11575845	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C6orf25	5,363 Icelandic ancestry individuals	NA	6p21.33		rs11575845-G	0.03386	7E-46		0.736966	[0.64-0.84] unit decrease	Illumina [7506463] (imputed)	N
608	chr6_mcf_hap5	3072068	3072069	rs11575845	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6p21.33		rs11575845-?	NR	4E-7		0.890554	[0.85-0.94]	NR [685523]	N
608	chr6_mcf_hap5	3072068	3072069	rs11575845	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	6p21.33	C6orf25	rs11575845-G	0.06333	6E-27		0.05543542	[0.045-0.066] unit increase	Affymetrix [93095623] (imputed)	N
608	chr6_mcf_hap5	3077069	3077070	rs805305	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C6orf25	5,363 Icelandic ancestry individuals	NA	6p21.33		rs805305-G	0.32	4E-22		0.196057	[0.16-0.24] unit increase	Illumina [7506463] (imputed)	N
608	chr6_mcf_hap5	3077240	3077241	rs707916	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling nervous	373,121 European ancestry individuals	NA	6p21.33	CCHCR1	rs707916-A	0.365563	2E-13		7.35	z score decrease	NR [10847151] (imputed)	N
608	chr6_mcf_hap5	3084097	3084098	rs115204832	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ISG15	5,349 Icelandic ancestry individuals	NA	6p21.33		rs115204832-G	0.01432	1E-183		2.1193	[1.98-2.26] unit decrease	Illumina [7506463] (imputed)	N
608	chr6_mcf_hap5	3084097	3084098	rs115204832	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C2	5,363 Icelandic ancestry individuals	NA	6p21.33		rs115204832-G	0.01432	1E-282		2.53186	[2.39-2.67] unit decrease	Illumina [7506463] (imputed)	N
608	chr6_mcf_hap5	3084812	3084813	rs145269503	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	6p21.33	CLIC1	rs145269503-A	0.0221	3E-36		0.1547004	[0.13-0.18] unit decrease	Affymetrix [~ 2500000] (imputed)	N
608	chr6_mcf_hap5	3086535	3086536	rs2736154	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		6p21.33	CLIC1	rs2736154-A	0.790274	4E-8		0.0109563	[0.007-0.0149] unit increase	Affymetrix [12370749]	N
608	chr6_mcf_hap5	3086537	3086538	rs396369	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	6p21.33		rs396369-T	NR	2E-15		0.0202	[0.015-0.025] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
608	chr6_mcf_hap5	3087209	3087210	rs28381344	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	6p21.33	NR	rs28381344-A	0.0438845616860758	1E-8		0.020618176	[0.014-0.028] unit increase	NR [NR]	N
608	chr6_mcf_hap5	3087209	3087210	rs28381344	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	6p21.33	NR	rs28381344-A	0.0438845616860758	1E-8		0.013281214	[0.0087-0.0179] unit increase	NR [NR]	N
608	chr6_mcf_hap5	3087209	3087210	rs28381344	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Strep throat	52,487 European ancestry cases, 22,017 European ancestry controls	NA	6p21.33	NR	rs28381344-?	NR	1E-6		0.0694	[0.041-0.098] unit decrease	Illumina [at least 560000] (imputed)	N
608	chr6_mcf_hap5	3087413	3087414	rs3131382	32752121	Nedoszytko B	2020-07-31	Int J Mol Sci	Results from a Genome-Wide Association Study (GWAS) in Mastocytosis Reveal New Gene Polymorphisms Associated with WHO Subgroups.	Systemic mastocytosis	93 European ancestry cases, 5,606 European ancestry controls	NA	6p21.33	MSH5	rs3131382-A	0.03194	9E-7		3.247	[2.75-3.74]	Illumina [281811]	N
608	chr6_mcf_hap5	3087413	3087414	rs3131382	32752121	Nedoszytko B	2020-07-31	Int J Mol Sci	Results from a Genome-Wide Association Study (GWAS) in Mastocytosis Reveal New Gene Polymorphisms Associated with WHO Subgroups.	Mastocytosis	234 European ancestry cases, 5,606 European ancestry controls	NA	6p21.33	MSH5	rs3131382-A	0.03194	3E-8		2.602	[2.25-2.95]	Illumina [281811]	N
608	chr6_mcf_hap5	3087830	3087831	rs409558	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	CLIC1, MSH5-SAPCD1, MSH5, SAPCD1-AS1, RNU6-850P, SAPCD1, VARS, VWA7	rs409558-C	0.1591365	1E-10	(EA, Complement C4)	0.3861	[0.27-0.5] unit increase	Affymetrix [509946]	N
608	chr6_mcf_hap5	3087830	3087831	rs409558	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Systolic blood pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	154,543 European ancestry individuals, 26,183 South Asian ancestry individuals	6p21.33	MSH5, SAPCD1	rs409558-G	0.176	6E-8		0.33	[0.21-0.45] unit decrease	Illumina [247039]	N
608	chr6_mcf_hap5	3087830	3087831	rs409558	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Pulse pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	154,543 European ancestry individuals, 26,183 South Asian ancestry individuals	6p21.33	MSH5, SAPCD1	rs409558-G	0.176	3E-9		0.26	[0.18-0.34] unit decrease	Illumina [247039]	N
608	chr6_mcf_hap5	3088593	3088594	rs28381348	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p21.33	MSH5	rs28381348-C	0.04	5E-6	(EA)	2.81	[1.77-4.47]	Illumina [up to 547389]	N
608	chr6_mcf_hap5	3089028	3089029	rs1144709	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	6p21.33	Intergenic	rs1144709-T	0.2281	3E-10	(MTAG)	0.0134	[0.0093-0.0175] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
608	chr6_mcf_hap5	3089028	3089029	rs1144709	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	6p21.33	Intergenic	rs1144709-C	0.7719	6E-9		0.0135	[0.009-0.018] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
608	chr6_mcf_hap5	3089028	3089029	rs1144709	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	6p21.33	Intergenic	rs1144709-C	0.7725	3E-10		0.017	[0.012-0.022] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
608	chr6_mcf_hap5	3089783	3089784	rs28381350	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	6p21.33	PRRC2A	rs28381350-A	0.1297	5E-9	(S1P d16:1)	0.1104	[0.073-0.147] unit decrease	Illumina [~ 47000000] (imputed)	N
608	chr6_mcf_hap5	3093133	3093134	rs3828922	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	CLIC1, MSH5-SAPCD1, MSH5, SAPCD1-AS1, RNU6-850P, SAPCD1, VARS, VWA7	rs3828922-T	0.1584754	2E-19	(EA, MHC class I polypeptide-related sequence A)	0.5315	[0.42-0.64] unit decrease	Affymetrix [509946]	N
608	chr6_mcf_hap5	3097381	3097382	rs3117572	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MSH5, MSH5-SAPCD1	rs3117572-A	NR	2E-9		0.023199	[0.016-0.031] unit increase	Affymetrix [323123] (imputed)	N
608	chr6_mcf_hap5	3097381	3097382	rs3117572	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	MSH5, MSH5-SAPCD1	rs3117572-A	NR	7E-10		0.0221723	[0.015-0.029] unit decrease	Affymetrix [321169] (imputed)	N
608	chr6_mcf_hap5	3100721	3100722	rs3131379	26316170	Demirci FY	2015-08-28	Arthritis Rheumatol	Identification of a New Susceptibility Locus for Systemic Lupus Erythematosus on Chromosome 12 in Individuals of European Ancestry.	Systemic lupus erythematosus	661 European ancestry cases, 487 European ancestry controls	4,467 European ancestry cases, 9,114 European ancestry controls	6p21.33	MSH5	rs3131379-?	NR	8E-8				Affymetrix [up to 700598]	N
608	chr6_mcf_hap5	3100721	3100722	rs3131379	18204446	Harley JB	2008-01-20	Nat Genet	Genome-wide association scan in women with systemic lupus erythematosus identifies susceptibility variants in ITGAM, PXK, KIAA1542 and other loci.	Systemic lupus erythematosus	720 European ancestry female cases, 2,337 European ancestry female controls	1,846 European ancestry female cases, 1,825 European ancestry female controls	6p21.33	HLA region	rs3131379-A	0.1	2E-52		2.36	[2.11-2.64]	Illumina [317501]	N
608	chr6_mcf_hap5	3102468	3102469	rs3130486	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (anilides)	83,218 European ancestry cases, 96,592 European ancestry controls	NA	6p21.33	MSH5	rs3130486-T	0.265164	1E-13		0.05492751	[0.04-0.069] unit decrease	Affymetrix [7288503] (imputed)	N
608	chr6_mcf_hap5	3104981	3104982	rs3131378	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	6p21.33	MSH5-SAPCD1	rs3131378-G	0.098896646	3E-18		1.1810031	[1.137601617-1.226060343]	Illumina [10439017] (imputed)	N
608	chr6_mcf_hap5	3106384	3106385	rs707939	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MSH5, MSH5-SAPCD1	rs707939-A	NR	4E-10		0.0204551	[0.014-0.027] unit decrease	Affymetrix [323123] (imputed)	N
608	chr6_mcf_hap5	3106384	3106385	rs707939	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.33	ABHD16A, AIF1, APOM, BAG6, C2, C2-AS1, C4A, C4B, C4B_2, C6orf25, C6orf47, C6orf48, CFB, CLIC1, CSNK2B, CYP21A1P, CYP21A2, DDAH2, DXO, EHMT2, GPANK1, HSPA1A, HSPA1B, HSPA1L, LSM2, LY6G5B, LY6G5C, LY6G6C, LY6G6D, LY6G6E, LY6G6F, MIR1236, MIR4646, MIR6832, MSH5, MSH5-SAPCD1, NELFE, NEU1, PRRC2A, SAPCD1, SAPCD1-AS1, SKIV2L, SLC44A4, SNORA38, SNORD48, SNORD52, STK19, TNXA, TNXB, VARS, VWA7, ZBTB12	rs707939-A		4E-12		1.07	[1.05-1.09]	Affymetrix, Illumina [NR]	N
608	chr6_mcf_hap5	3106546	3106547	rs17207524	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	6p21.33	MSH5	rs17207524-T	0.06447	3E-8		1.09	NR	Affymetrix [9154080] (imputed)	N
608	chr6_mcf_hap5	3106546	3106547	rs17207524	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs17207524-G	0.96171875	3E-9	(TGM3, 4471_50_2)	0.3747752	[0.25-0.5] unit increase	Illumina [> 1000000] (imputed)	N
608	chr6_mcf_hap5	3106546	3106547	rs17207524	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs17207524-G	0.96171875	1E-31	(G6B, 7065_1_4)	0.7349115	[0.61-0.86] unit increase	Illumina [> 1000000] (imputed)	N
608	chr6_mcf_hap5	3106546	3106547	rs17207524	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs17207524-G	0.96171875	1E-14	(C4A C4B, 4481_34_2)	0.5052215	[0.38-0.63] unit decrease	Illumina [> 1000000] (imputed)	N
608	chr6_mcf_hap5	3107593	3107594	rs3115672	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Squamous cell lung carcinoma	8,350 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	6p21.33	NR	rs3115672-T	NR	2E-8		1.28	[1.17-1.39]	NR [NR] (imputed)	N
608	chr6_mcf_hap5	3107593	3107594	rs3115672	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Non-small cell lung cancer	27,120 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	6p21.33	NR	rs3115672-T	NR	4E-6		1.15	[1.08-1.22]	NR [NR] (imputed)	N
608	chr6_mcf_hap5	3107593	3107594	rs3115672	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	6p21.33	NR	rs3115672-T	0.113634053654599	4E-15		0.014519162	[0.011-0.018] unit decrease	NR [NR]	N
608	chr6_mcf_hap5	3107593	3107594	rs3115672	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	6p21.33	NR	rs3115672-T	0.113634053654599	6E-15		0.018733539	[0.014-0.023] unit decrease	NR [NR]	N
608	chr6_mcf_hap5	3107593	3107594	rs3115672	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	6p21.33	NR	rs3115672-T	0.113634053654599	5E-14		0.015431175	[0.011-0.019] unit decrease	NR [NR]	N
608	chr6_mcf_hap5	3107593	3107594	rs3115672	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	6p21.33	NR	rs3115672-T	0.113634053654599	2E-15		0.0121121025	[0.0091-0.0151] unit decrease	NR [NR]	N
608	chr6_mcf_hap5	3107685	3107686	rs61748589	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C4A;C4B	5,362 Icelandic ancestry individuals	NA	6p21.33		rs61748589-G	0.01635	1E-9		0.440324	[0.3-0.58] unit decrease	Illumina [7506463] (imputed)	N
608	chr6_mcf_hap5	3107963	3107964	rs2075801	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	CLIC1, MSH5-SAPCD1, MSH5, SAPCD1-AS1, RNU6-850P, SAPCD1, VARS, VWA7	rs2075801-A	0.1582915	8E-15	(EA, gp41 C34 peptide, HIV)	0.4506	[0.34-0.56] unit increase	Affymetrix [509946]	N
608	chr6_mcf_hap5	3109055	3109056	rs707938	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	6p21.33	NR	rs707938-A	0.319085	5E-9		0.039337814	[0.026-0.053] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
608	chr6_mcf_hap5	3109055	3109056	rs707938	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	6p21.33	Intergenic	rs707938-A	0.6802	4E-9		0.018	[0.012-0.024] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
608	chr6_mcf_hap5	3109055	3109056	rs707938	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p21.33	NR	rs707938-?	NR	9E-7		4.905	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
608	chr6_mcf_hap5	3109055	3109056	rs707938	29773799	Horikoshi M	2018-05-17	Nat Commun	Elucidating the genetic architecture of reproductive ageing in the Japanese population.	Menarche (age at onset)	67,029 Japanese ancestry women	73,397 European ancestry women	6p21.33	NR	rs707938-A	0.5873	1E-12	(japanese)	0.189	[0.14-0.24] year increase	Illumina [at least 532488] (imputed)	N
608	chr6_mcf_hap5	3109055	3109056	rs707938	26414677	Day FR	2015-11-01	Nat Genet	Large-scale genomic analyses link reproductive aging to hypothalamic signaling, breast cancer susceptibility and BRCA1-mediated DNA repair.	Menopause (age at onset)	up to 69,626 European ancestry women	NA	6p21.33	MSH5, HLA	rs707938-G	0.32	7E-15		0.17	[0.13-0.21] years decrease	Affymetrix, Illumina [~ 2600000] (imputed)	N
608	chr6_mcf_hap5	3109621	3109622	rs1802127	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.33	NR	rs1802127-T	0.016	3E-6	(women)	0.571389	[0.33-0.81] unit increase	Affymetrix [up to 8900000] (imputed)	N
608	chr6_mcf_hap5	3109621	3109622	rs1802127	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.33	NR	rs1802127-T	0.016	1E-10		0.461925	[0.32-0.6] unit increase	Affymetrix [up to 8900000] (imputed)	N
608	chr6_mcf_hap5	3110447	3110448	rs28399987	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs28399987-?		7E-8		1.06	[1.04-1.09]	Illumina [7645193] (imputed)	N
608	chr6_mcf_hap5	3110447	3110448	rs28399987	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p21.33	MSH5, C6orf26	rs28399987-A	0.02	8E-8	(Turkish)	3.55	[2.17-5.79]	Illumina [up to 547389]	N
608	chr6_mcf_hap5	3113162	3113163	rs3101017	33909500	Moll M	2021-04-28	Am J Physiol Lung Cell Mol Physiol	A Systematic Analysis of Protein-altering Exonic Variants in Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease	up to 31,465 European ancestry cases, up to 203,688 European ancestry controls, up to 1,413 African ancestry cases, up to 6,080 African ancestry controls, up to 287 East Asian ancestry cases, up to 7,484 East Asian ancestry controls, up to 61 Hispanic cases, up to 613 Hispanic controls	NA	6p21.33	VWA7	rs3101017-C	0.13	2E-14		1.12	[1.09 -1.15]	Illumina [at least 109036]	N
608	chr6_mcf_hap5	3113162	3113163	rs3101017	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p21.33	VWA7	rs3101017-C		2E-35		0.041	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
608	chr6_mcf_hap5	3113647	3113649	rs9279411	28067912	Lee JC	2017-01-09	Nat Genet	Genome-wide association study identifies distinct genetic contributions to prognosis and susceptibility in Crohn's disease.	Poor prognosis in Crohn's disease	1,762 Northern European ancestry poor prognosis cases, 972 Northern European ancestry good prognosis controls.		6p21.33	MHC	rs9279411-?	NR	5E-9		1.67	[1.41-2.00]	Affymetrix, Illumina [at least 7000000] (imputed)	N
608	chr6_mcf_hap5	3118104	3118105	rs9461721	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.33		rs9461721-A	0.972	3E-27				Affymetrix [10369434] (imputed)	N
608	chr6_mcf_hap5	3118816	3118817	rs3130490	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	6p21.33	NR	rs3130490-?	NR	5E-10				Affymetrix [~ 8270000] (imputed)	N
608	chr6_mcf_hap5	3118816	3118817	rs3130490	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	6p21.33	NR	rs3130490-?	NR	2E-14				Affymetrix [~ 8270000] (imputed)	N
608	chr6_mcf_hap5	3119194	3119195	rs143029752	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs143029752-?		3E-8		1.78	[1.45-2.19]	Illumina [7645193] (imputed)	N
608	chr6_mcf_hap5	3119380	3119381	rs191306205	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	6p21.33	NR	rs191306205-?	NR	1E-9	(CCL19)	0.542377	[0.37-0.72] unit increase	Illumina [11901634] (imputed)	N
608	chr6_mcf_hap5	3119426	3119427	rs527960948	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on switched memory B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs527960948-C	0.09002	2E-9		0.3289	[0.22-0.44] unit increase	Illumina [18238311] (imputed)	N
608	chr6_mcf_hap5	3119426	3119427	rs527960948	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on IgD- CD38- B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs527960948-C	0.09002	4E-8		0.2922	[0.19-0.4] unit increase	Illumina [18238311] (imputed)	N
608	chr6_mcf_hap5	3120150	3120151	rs805825	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.33		rs805825-G	0.561	1E-14				Affymetrix [10369434] (imputed)	N
608	chr6_mcf_hap5	3120150	3120151	rs805825	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p21.33		rs805825-G	0.561	2E-10				Affymetrix [10369434] (imputed)	N
608	chr6_mcf_hap5	3121355	3121356	rs707930	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	6p21.33	NR	rs707930-T	0.477089	4E-14		0.0517342	[0.038-0.065] unit decrease	Affymetrix [17914406] (imputed)	N
608	chr6_mcf_hap5	3121938	3121939	rs6914412	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Mean platelet volume	21,347 Hispanic or Latin American individuals	NA	6p21.33		rs6914412-T	0.1345	4E-7		0.1401	[0.086-0.194] unit increase	Affymetrix, Illumina [NR] (imputed)	N
608	chr6_mcf_hap5	3121938	3121939	rs6914412	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	6p21.33	VWA7	rs6914412-C	0.0959	9E-11		0.03949006	[0.028-0.051] unit increase	Affymetrix [~ 2500000] (imputed)	N
608	chr6_mcf_hap5	3122286	3122287	rs707928	33563987	Tyrrell J	2021-02-09	Nat Commun	Genetic predictors of participation in optional components of UK Biobank.	Percentage of invited food questionnaires completed	300,639 European ancestry individuals	NA	6p21.33	NR	rs707928-A	0.66	8E-9		0.54	[0.36-0.72] unit decrease	Affymetrix [39302896] (imputed)	N
608	chr6_mcf_hap5	3122286	3122287	rs707928	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling worry	372,869 European ancestry individuals	NA	6p21.33	SAPCD1	rs707928-A	0.346873	2E-8		5.643	unit increase	NR [10847151] (imputed)	N
608	chr6_mcf_hap5	3125160	3125161	rs3130491	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Diastolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	6p21.33	VARS	rs3130491-A	0.3561	4E-14		0.317	[0.23-0.4] mmHg decrease	Affymetrix [NR] (imputed)	N
608	chr6_mcf_hap5	3125214	3125215	rs707927	31932636	Hebbar P	2020-01-13	Sci Rep	Genome-wide association study identifies novel risk variants from RPS6KA1, CADPS, VARS, and DHX58 for fasting plasma glucose in Arab population.	Fasting plasma glucose	1,353 Arab ancestry individuals	1,176 Arab ancestry individuals	6p21.33	VARS, VWA7	rs707927-G	NR	3E-9		5.928	[NR] unit increase	Illumina [632375]	N
608	chr6_mcf_hap5	3126244	3126245	rs909267	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	VARS	rs909267-C	NR	2E-8		0.0322466	[0.021-0.043] unit decrease	Affymetrix [321016] (imputed)	N
608	chr6_mcf_hap5	3128838	3128839	rs915652	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p21.33	VARS	rs915652-A	0.337	4E-32				Illumina [118177]	N
608	chr6_mcf_hap5	3135473	3135474	rs9469053	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on IgD- CD38dim B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs9469053-G	0.18398	1E-10		0.2372	[0.16-0.31] unit increase	Illumina [18238311] (imputed)	N
608	chr6_mcf_hap5	3138627	3138628	rs6899983	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Aspartate aminotransferase levels in low alcohol consumption	8,716 individuals	NA	6p21.33	NR	rs6899983-?	NR	2E-7		0.1467	[0.092-0.202] unit increase	Illumina [~ 7800000] (imputed)	N
608	chr6_mcf_hap5	3140759	3140760	rs9469054	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	6p21.33	VARS	rs9469054-A	0.0247	1E-20		0.1068719	[0.084-0.129] unit increase	Affymetrix [~ 2500000] (imputed)	N
608	chr6_mcf_hap5	3141561	3141562	rs3115670	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	6p21.33	VARS	rs3115670-T	NR	1E-19		0.0626938	[0.049-0.076] unit decrease	Illumina [13520550] (imputed)	N
608	chr6_mcf_hap5	3142539	3142540	rs2607015	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	VARS	rs2607015-C	NR	5E-12		0.0196764	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
608	chr6_mcf_hap5	3142539	3142540	rs2607015	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	VARS	rs2607015-C	NR	3E-8		0.0175576	[0.011-0.024] unit increase	Affymetrix [323858] (imputed)	N
608	chr6_mcf_hap5	3142539	3142540	rs2607015	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	VARS	rs2607015-C	NR	4E-11		0.0188809	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
608	chr6_mcf_hap5	3142540	3142541	rs2753960	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	VARS	rs2753960-T	NR	1E-8		0.0161747	[0.011-0.022] unit decrease	Affymetrix [321016] (imputed)	N
608	chr6_mcf_hap5	3142540	3142541	rs2753960	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	VARS	rs2753960-T	NR	3E-11		0.0207398	[0.015-0.027] unit decrease	Affymetrix [323123] (imputed)	N
608	chr6_mcf_hap5	3142540	3142541	rs2753960	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	VARS	rs2753960-T	NR	3E-14		0.0219625	[0.016-0.028] unit increase	Affymetrix [321169] (imputed)	N
608	chr6_mcf_hap5	3142540	3142541	rs2753960	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	6p21.33	VARS	rs2753960-T	0.4128	2E-14		0.02776258	[0.021-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
608	chr6_mcf_hap5	3145560	3145561	rs1144710	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	6p21.33	LSM2	rs1144710-T	NR	2E-11		0.192529	[0.14-0.25] unit increase	Illumina [at least 950000] (imputed)	N
608	chr6_mcf_hap5	3145560	3145561	rs1144710	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA	6p21.33	NR	rs1144710-?	NR	6E-6		0.0474	[0.027-0.068] unit increase	Illumina [at least 560000] (imputed)	N
608	chr6_mcf_hap5	3145560	3145561	rs1144710	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p21.33	NR	rs1144710-?	NR	2E-10		0.0847	[0.059-0.111] unit increase	Illumina [at least 560000] (imputed)	N
609	chr6_mcf_hap5	3189814	3189817	rs74887990	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	6p21.33	C6orf48	rs74887990-T	0.0231	6E-16		0.063891105	[0.048-0.079] unit increase	Affymetrix [93095623] (imputed)	N
609	chr6_mcf_hap5	3191260	3191261	rs3130479	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	C6orf48	rs3130479-A	NR	2E-10		0.0294674	[0.02-0.038] unit increase	Affymetrix [321169] (imputed)	N
609	chr6_mcf_hap5	3191735	3191736	rs9267576	31375628	Tengvall K	2019-08-02	Proc Natl Acad Sci U S A	Molecular mimicry between Anoctamin 2 and Epstein-Barr virus nuclear antigen 1 associates with multiple sclerosis risk.	Anti-anoctamin 2 antibody levels	11,936 European ancestry individuals	NA	6p21.33	NR	rs9267576-A	NR	2E-8		0.07	[0.041-0.099] unit increase	Illumina [615763]	N
609	chr6_mcf_hap5	3192667	3192668	rs144527861	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	6p21.33	PRRC2A	rs144527861-A	0.1297	2E-9	(S1P d16:1)	0.115	[0.078-0.152] unit decrease	Illumina [~ 47000000] (imputed)	N
609	chr6_mcf_hap5	3195754	3195755	rs28732162	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p21.33	NR	rs28732162-?	NR	7E-17		0.1769	[0.14-0.22] unit increase	Illumina [at least 560000] (imputed)	N
609	chr6_mcf_hap5	3197803	3197804	rs9267578	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	NEU1	rs9267578-T	NR	6E-10		0.025611	[0.018-0.034] unit decrease	Affymetrix [319769] (imputed)	N
609	chr6_mcf_hap5	3200340	3200341	rs2736429	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling nervous	373,121 European ancestry individuals	NA	6p21.33	NR	rs2736429-A	0.384863	6E-12		6.89	z score increase	NR [10847151] (imputed)	N
609	chr6_mcf_hap5	3200881	3200882	rs370025470	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	6p21.33	NEU1	rs370025470-C	0.030144	3E-16		0.056601908	[0.043-0.07] unit increase	Affymetrix [93095623] (imputed)	N
609	chr6_mcf_hap5	3201816	3201817	rs35745547	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	NEU1	rs35745547-A	NR	1E-9		0.0190063	[0.013-0.025] unit increase	Affymetrix [321169] (imputed)	N
609	chr6_mcf_hap5	3202492	3202493	rs9267647	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	6p21.33	NEU1	rs9267647-T	0.132946	4E-11		0.022519508	[0.016-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
609	chr6_mcf_hap5	3203133	3203134	rs115310850	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.33	NR	rs115310850-A	0.01	2E-11		0.616842	[0.44-0.8] unit increase	Affymetrix [up to 8900000] (imputed)	N
609	chr6_mcf_hap5	3204789	3204790	rs9267650	27539887	Chahal HS	2016-08-19	Nat Commun	Genome-wide association study identifies 14 novel risk alleles associated with basal cell carcinoma.	Basal cell carcinoma	12.945 European ancestry cases, 274,252 European ancestry controls	4,242 European ancestry cases, 12,802 European ancestry controls	6p21.33	NEU1	rs9267650-T	0.05	1E-8		1.17	[NR]	Illumina [at least 560000] (imputed)	N
609	chr6_mcf_hap5	3206582	3206583	rs622076	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C2	5,363 Icelandic ancestry individuals	NA	6p21.33		rs622076-A	0.1077	2E-23		0.300008	[0.24-0.36] unit increase	Illumina [7506463] (imputed)	N
609	chr6_mcf_hap5	3206582	3206583	rs622076	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	6p21.33	NEU1	rs622076-A	0.1361	3E-14	(discovery)	0.0035	[0.0025-0.0045] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
609	chr6_mcf_hap5	3207163	3207164	rs13118	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6p21.33	SLC44A4	rs13118-?	NR	5E-6	(TAG 52:6)	0.3502205	[0.2-0.5] unit increase	Affymetrix [at least 2500000] (imputed)	N
609	chr6_mcf_hap5	3215039	3215040	rs74290525	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	NA	6p21.33	SLC44A4	rs74290525-G		1E-12	(conditional)	2.06	[NR]	Illumina [> 644674] (imputed)	N
609	chr6_mcf_hap5	3215041	3215042	rs693906	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	6p21.33		rs693906-C	NR	2E-33		0.029	[0.024-0.034] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
609	chr6_mcf_hap5	3215041	3215042	rs693906	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Scarlet fever	6,812 European ancestry cases, 113,837 European ancestry controls	NA	6p21.33	NR	rs693906-?	NR	7E-6		0.1149	[0.065-0.164] unit decrease	Illumina [at least 560000] (imputed)	N
609	chr6_mcf_hap5	3216319	3216320	rs542418	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.33	NR	rs542418-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
609	chr6_mcf_hap5	3216319	3216320	rs542418	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	6p21.33	NR	rs542418-?	NR	3E-6		0.0552	[0.032-0.078] unit increase	Illumina [at least 560000] (imputed)	N
609	chr6_mcf_hap5	3216700	3216701	rs521977	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	SLC44A4	rs521977-T	NR	9E-19		0.0294152	[0.023-0.036] unit decrease	Affymetrix [323858] (imputed)	N
609	chr6_mcf_hap5	3216700	3216701	rs521977	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	SLC44A4	rs521977-T	NR	3E-16		0.0271844	[0.021-0.034] unit decrease	Affymetrix [127266] (imputed)	N
609	chr6_mcf_hap5	3216700	3216701	rs521977	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Perceived unattractiveness to mosquitoes	16,576 European ancestry individuals	NA	6p21.33	SLC44A4	rs521977-T	0.276	4E-7		0.131107	[0.08-0.182] unit increase	Illumina [7433384] (imputed)	N
609	chr6_mcf_hap5	3216700	3216701	rs521977	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	6p21.33	SLC44A4	rs521977-T	NR	9E-7		0.0192183	[0.012-0.027] unit increase	Illumina [13519193] (imputed)	N
609	chr6_mcf_hap5	3216700	3216701	rs521977	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	6p21.33	SLC44A4	rs521977-T	NR	4E-20		0.0380858	[0.03-0.046] unit increase	Illumina [13520550] (imputed)	N
609	chr6_mcf_hap5	3216939	3216940	rs11966200	20526339	Quan C	2010-06-06	Nat Genet	Genome-wide association study for vitiligo identifies susceptibility loci at 6q27 and the MHC.	Vitiligo	1,117 Han Chinese ancestry cases, 1,429 Han Chinese ancestry controls	6,623 East Asian ancestry cases, 10,740 East Asian ancestry controls	6p21.33	HLA-C, HLA-B	rs11966200-A	0.06	1E-48		1.9	[1.74-2.07]	Illumina [493909]	N
609	chr6_mcf_hap5	3217150	3217151	rs660550	31837886	Kennedy OJ	2019-12-02	Am J Kidney Dis	Coffee Consumption and Kidney Function: A Mendelian Randomization Study.	Coffee consumption (cups per day)	227,666 British ancestry individuals	NA	6p21.33	SLC44A4	rs660550-A	0.525	8E-9		0.034	NR cups per day decrease	NR [NR]	N
609	chr6_mcf_hap5	3217834	3217835	rs577272	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs577272-G	NR	6E-9		0.0164512	[0.011-0.022] unit decrease	Affymetrix [321114] (imputed)	N
609	chr6_mcf_hap5	3217834	3217835	rs577272	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs577272-G	NR	1E-21		0.0272058	[0.022-0.033] unit decrease	Affymetrix [321169] (imputed)	N
609	chr6_mcf_hap5	3217834	3217835	rs577272	27286809	Ligthart S	2016-06-10	BMC Genomics	Bivariate genome-wide association study identifies novel pleiotropic loci for lipids and inflammation.	C-reactive protein levels or total cholesterol levels (pleiotropy)	65,000 individuals (C-reactive protein), 100,184 individuals (total cholesterol)	NA	6p21.33	SLC44A4	rs577272-A	NR	2E-8				NR [2501549] (imputed)	N
609	chr6_mcf_hap5	3218361	3218362	rs644774	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs644774-C	NR	4E-22		0.0271946	[0.022-0.033] unit decrease	Affymetrix [319769] (imputed)	N
609	chr6_mcf_hap5	3218361	3218362	rs644774	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs644774-C	NR	6E-21		0.0263821	[0.021-0.032] unit decrease	Affymetrix [319769] (imputed)	N
609	chr6_mcf_hap5	3218361	3218362	rs644774	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs644774-C	NR	2E-13		0.0206859	[0.015-0.026] unit increase	Affymetrix [321016] (imputed)	N
609	chr6_mcf_hap5	3218584	3218585	rs494620	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs494620-A	NR	1E-13		0.0214886	[0.016-0.027] unit increase	Affymetrix [319769] (imputed)	N
609	chr6_mcf_hap5	3218584	3218585	rs494620	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	SLC44A4	rs494620-A	NR	4E-10		0.0201809	[0.014-0.026] unit increase	Affymetrix [323858] (imputed)	N
609	chr6_mcf_hap5	3218584	3218585	rs494620	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs494620-A	NR	6E-13		0.0208264	[0.015-0.027] unit increase	Affymetrix [319769] (imputed)	N
609	chr6_mcf_hap5	3218584	3218585	rs494620	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	SLC44A4	rs494620-A	NR	6E-9		0.0187173	[0.012-0.025] unit increase	Affymetrix [127266] (imputed)	N
609	chr6_mcf_hap5	3218584	3218585	rs494620	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs494620-A	NR	7E-16		0.0236685	[0.018-0.029] unit increase	Affymetrix [321169] (imputed)	N
609	chr6_mcf_hap5	3218584	3218585	rs494620	19448619	Stolk L	2009-05-15	Nat Genet	Loci at chromosomes 13, 19 and 20 influence age at natural menopause.	Menopause (age at onset)	2,979 European ancestry female individuals	2,560 European ancestry female individuals	6p21.33	NR	rs494620-?	NR	5E-7		0.3	[0.18-0.42] years increase	Illumina [315418]	N
609	chr6_mcf_hap5	3219653	3219654	rs3130482	31879980	German CA	2019-12-26	Genet Epidemiol	Ordered multinomial regression for genetic association analysis of ordinal phenotypes at Biobank scale.	Hypertension	30,822 British ancestry normal blood pressure individuals, 25,242 British ancestry elevated blood pressure individuals, 50,461 British ancestry stage 1 hypertension individuals, 75,286 British ancestry stage 2 hypertension individuals, 3,754 British ancestry hypertension crisis individuals	NA	6p21.33	SLC44A4	rs3130482-?	NR	1E-10		0.03993774	NR unit increase	Affymetrix [464137]	N
609	chr6_mcf_hap5	3219892	3219893	rs2763981	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs2763981-T	NR	6E-27		0.0318493	[0.026-0.038] unit decrease	Affymetrix [319769] (imputed)	N
609	chr6_mcf_hap5	3219892	3219893	rs2763981	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs2763981-T	NR	3E-25		0.0308309	[0.025-0.037] unit decrease	Affymetrix [319769] (imputed)	N
609	chr6_mcf_hap5	3219892	3219893	rs2763981	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs2763981-T	NR	3E-8		0.0165328	[0.011-0.022] unit decrease	Affymetrix [321114] (imputed)	N
609	chr6_mcf_hap5	3219892	3219893	rs2763981	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	SLC44A4	rs2763981-T	NR	2E-27		0.0349933	[0.029-0.041] unit increase	Affymetrix [323123] (imputed)	N
609	chr6_mcf_hap5	3219892	3219893	rs2763981	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs2763981-T	NR	1E-24		0.0307655	[0.025-0.037] unit decrease	Affymetrix [321169] (imputed)	N
609	chr6_mcf_hap5	3219892	3219893	rs2763981	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	6p21.33	SLC44A4	rs2763981-A	NR	8E-14				Affymetrix, Illumina [NR] (imputed)	N
609	chr6_mcf_hap5	3219892	3219893	rs2763981	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	6p21.33	SLC44A4	rs2763981-A	NR	1E-18	(EA)			Affymetrix, Illumina [NR] (imputed)	N
609	chr6_mcf_hap5	3219892	3219893	rs2763981	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	6p21.33	SLC44A4	rs2763981-A	NR	3E-19	(EA)			Affymetrix, Illumina [NR] (imputed)	N
609	chr6_mcf_hap5	3219892	3219893	rs2763981	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	6p21.33	SLC44A4	rs2763981-A	NR	1E-14				Affymetrix, Illumina [NR] (imputed)	N
609	chr6_mcf_hap5	3219892	3219893	rs2763981	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	6p21.33	SLC44A4	rs2763981-A	NR	6E-14	(EA)	0.021	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
609	chr6_mcf_hap5	3219892	3219893	rs2763981	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	6p21.33	SLC44A4	rs2763981-A	NR	1E-10		0.015	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
609	chr6_mcf_hap5	3219892	3219893	rs2763981	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	6p21.33	SLC44A4	rs2763981-A	NR	4E-6		0.012	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
609	chr6_mcf_hap5	3219892	3219893	rs2763981	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	6p21.33	SLC44A4	rs2763981-A	NR	2E-8	(EA)	0.021	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
609	chr6_mcf_hap5	3219892	3219893	rs2763981	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	6p21.33	SLC44A4	rs2763981-A	NR	5E-11				Affymetrix, Illumina [NR] (imputed)	N
609	chr6_mcf_hap5	3219892	3219893	rs2763981	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	6p21.33	SLC44A4	rs2763981-A	NR	3E-11	(EA)			Affymetrix, Illumina [NR] (imputed)	N
609	chr6_mcf_hap5	3219892	3219893	rs2763981	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	6p21.33	SLC44A4	rs2763981-A	NR	7E-12				Affymetrix, Illumina [NR] (imputed)	N
609	chr6_mcf_hap5	3219892	3219893	rs2763981	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	6p21.33	SLC44A4	rs2763981-A	NR	4E-12	(EA)			Affymetrix, Illumina [NR] (imputed)	N
609	chr6_mcf_hap5	3219892	3219893	rs2763981	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	6p21.33	SLC44A4	rs2763981-A	NR	6E-9	(EA)	1.145	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
609	chr6_mcf_hap5	3219892	3219893	rs2763981	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	6p21.33	SLC44A4	rs2763981-A	NR	3E-9		1.01	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
609	chr6_mcf_hap5	3219892	3219893	rs2763981	30670697	Kilpelainen TO	2019-01-22	Nat Commun	Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity.	Triglycerides x physical activity interaction (2df test)	7,294 African American inactive individuals, 12,832 African American active individuals, 1,352 Asian ancestry inactive individuals, 3,049 Asian ancestry active individuals, 20,622 European ancestry inactive individuals, 51,480 European ancestry active individuals, 2,166 Hispanic or Latin American inactive individuals, 3,486 Hispanic or Latin American active individuals	580 African American inactive individuals, 1,540 African American active individuals, 1,217 South African Black ancestry inactive individuals, 389 South African Black ancestry active individuals, 765 East Asian ancestry inactive individuals, 1,814 East Asian ancestry active individuals,  724 South Asian ancestry inactive individuals, 1,424 South Asian ancestry active individuals, 32,456 European ancestry inactive individuals, 49,510 European ancestry active individuals, 2,619 Hispanic inactive individuals, 8,803 Hispanic active individuals	6p21.33	NR	rs2763981-A	0.7045	4E-14	(EA)			Affymetrix, Illumina [at least 2500000] (imputed)	N
609	chr6_mcf_hap5	3219892	3219893	rs2763981	28334935	Raffield LM	2017-05-15	Hum Mol Genet	Genome-wide association study of iron traits and relation to diabetes in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL): potential genomic intersection of iron and glucose regulation?	Iron status biomarkers (total iron binding capacity)	12,586 Hispanic/Latino individuals	NA	6p21.33	SLC44A4	rs2763981-T	NR	8E-7		0.124	[0.075-0.173] unit decrease	Illumina [27700000] (imputed)	N
609	chr6_mcf_hap5	3220286	3220287	rs9267653	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs9267653-T	NR	9E-9		0.0178718	[0.012-0.024] unit decrease	Affymetrix [319769] (imputed)	N
609	chr6_mcf_hap5	3220286	3220287	rs9267653	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs9267653-T	NR	1E-8		0.0176946	[0.012-0.024] unit decrease	Affymetrix [319769] (imputed)	N
609	chr6_mcf_hap5	3220286	3220287	rs9267653	26423011	Wain LV	2015-09-27	Lancet Respir Med	Novel insights into the genetics of smoking behaviour, lung function, and chronic obstructive pulmonary disease (UK BiLEVE): a genetic association study in UK Biobank.	Lung function (low FEV1 vs high FEV1)	19,493 European ancestry individuals with low FEV1 measurements, 9,808 European ancestry individuals with high FEV1 measurements	NA	6p21.33	SLC44A4	rs9267653-C	NR	4E-9		0.124	[0.083-0.165] unit increase	Affymetrix [28509962] (imputed)	N
609	chr6_mcf_hap5	3220326	3220327	rs553108	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls	NA	6p21.33	SLC44A4	rs553108-A	0.418103	2E-10		0.0516698	[0.036-0.068] unit decrease	Affymetrix [7288503] (imputed)	N
609	chr6_mcf_hap5	3220326	3220327	rs553108	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Ease of getting up in the morning	385,949 European ancestry individuals	NA	6p21.33	NR	rs553108-A	0.4159	3E-8		0.0097	[0.0062-0.0132] unit increase	Affymetrix, Illumina [10862568] (imputed)	N
609	chr6_mcf_hap5	3220348	3220349	rs501942	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	6p21.33	NR	rs501942-T	0.09	3E-19		1.26	[1.2-1.32]	Illumina [8468885] (imputed)	N
609	chr6_mcf_hap5	3220348	3220349	rs501942	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in ever smokers	23,223 European ancestry cases,  16,964 European ancestry controls	NA	6p21.33	SLC44A4	rs501942-T	0.101035865	3E-14		1.2034894	[1.147434239-1.262282973]	Illumina [10439017] (imputed)	N
609	chr6_mcf_hap5	3220348	3220349	rs501942	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	6p21.33	SLC44A4	rs501942-T	0.098642093	8E-19		1.1851386	[1.141406179-1.230546538]	Illumina [10439017] (imputed)	N
609	chr6_mcf_hap5	3220880	3220881	rs9267654	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs9267654-A	NR	2E-12		0.0251845	[0.018-0.032] unit decrease	Affymetrix [319769] (imputed)	N
609	chr6_mcf_hap5	3220880	3220881	rs9267654	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs9267654-A	NR	3E-12		0.0249577	[0.018-0.032] unit decrease	Affymetrix [319769] (imputed)	N
609	chr6_mcf_hap5	3220880	3220881	rs9267654	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs9267654-A	NR	4E-10		0.0223343	[0.015-0.029] unit increase	Affymetrix [321016] (imputed)	N
609	chr6_mcf_hap5	3221762	3221763	rs573098	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs573098-A	NR	2E-20		0.0279205	[0.022-0.034] unit increase	Affymetrix [321016] (imputed)	N
609	chr6_mcf_hap5	3221762	3221763	rs573098	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p21.33	SLC44A4	rs573098-A	NR	1E-9		0.0200634	[0.014-0.027] unit decrease	Affymetrix [323858] (imputed)	N
609	chr6_mcf_hap5	3221762	3221763	rs573098	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	6p21.33	NR	rs573098-T	0.679422	2E-12		0.0509102	[0.037-0.065] unit decrease	Affymetrix [17914406] (imputed)	N
609	chr6_mcf_hap5	3222470	3222471	rs12661281	25629512	Cheng CY	2015-01-28	Nat Commun	New loci and coding variants confer risk for age-related macular degeneration in East Asians.	Exudative age-related macular degeneration	2,119 East Asian ancestry cases, 5,691 East Asian ancestry controls	4,226 East Asian ancestry cases, 10,289 East Asian ancestry controls	6p21.33	SLC44A4	rs12661281-?	NR	1E-11		1.27	[NR]	Illumina [4471719] (imputed)	N
609	chr6_mcf_hap5	3223796	3223797	rs2736428	20421499	Levy D	2010-04-26	Proc Natl Acad Sci U S A	Genome-wide association identifies OBFC1 as a locus involved in human leukocyte telomere biology.	Telomere length	3,417 European ancestry individuals	1,893 African American and European ancestry individuals, 2,876 European ancestry individuals	6p21.33	SLC44A4	rs2736428-T	NR	3E-6		0.05	[0.03-0.07] kb increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
609	chr6_mcf_hap5	3225857	3225858	rs9267658	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6p21.33		rs9267658-T	0.1428	5E-12		0.0138	[0.0099-0.0177] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
609	chr6_mcf_hap5	3225945	3225946	rs114400264	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		SLC44A4	rs114400264-?	NR	5E-9	(male)	2.81252	[NR] unit decrease	Affymetrix [NR] (imputed)	N
609	chr6_mcf_hap5	3226106	3226107	rs9267659	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	6p21.33	SLC44A4	rs9267659-A	0.2004	4E-11		0.079	[0.056-0.102] unit increase	NR [7784415] (imputed)	N
609	chr6_mcf_hap5	3226772	3226773	rs114951054	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		EHMT2-AS1	rs114951054-?	NR	2E-9	(male)	2.96479	[NR] unit decrease	Affymetrix [NR] (imputed)	N
609	chr6_mcf_hap5	3226884	3226885	rs605203	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	6p21.33	NR	rs605203-A	0.62	4E-43		0.025	[0.021-0.029] unit increase	Affymetrix [2446094] (imputed)	N
609	chr6_mcf_hap5	3226884	3226885	rs605203	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	6p21.33	NR	rs605203-A	0.62	5E-8				Affymetrix [2446094] (imputed)	N
609	chr6_mcf_hap5	3227290	3227291	rs116369005	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	6p21.33	SLC44A4, EHMT2-AS1	rs116369005-C	0.021645	3E-10		0.052029066	[0.036-0.068] unit increase	Affymetrix [93095623] (imputed)	N
609	chr6_mcf_hap5	3227508	3227509	rs41267086	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C4A;C4B	5,353 Icelandic ancestry individuals	NA	6p21.33		rs41267086-A	0.09194	2E-44		0.435404	[0.37-0.5] unit decrease	Illumina [7506463] (imputed)	N
609	chr6_mcf_hap5	3227508	3227509	rs41267086	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.33	NR	rs41267086-?	NR	6E-12				Affymetrix [~ 8270000] (imputed)	N
609	chr6_mcf_hap5	3228092	3228093	rs589428	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI in non-smokers	75,379 European ancestry women, 45,811 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	6p21.33	EHMT2	rs589428-G	0.651	2E-10	(EA)	0.016	[0.01-0.022] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
609	chr6_mcf_hap5	3228092	3228093	rs589428	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	6p21.33	EHMT2	rs589428-G	0.65	1E-17	(EA)	0.024	[0.018-0.03] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
609	chr6_mcf_hap5	3228312	3228313	rs41267090	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p21.33	EHMT2	rs41267090-T	0.05	8E-7	(EA)	2.82	[1.84-4.33]	Illumina [up to 547389]	N
609	chr6_mcf_hap5	3230180	3230181	rs74434374	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NCR3	5,364 Icelandic ancestry individuals	NA	6p21.33		rs74434374-A	0.07046	4E-24		0.354873	[0.29-0.42] unit decrease	Illumina [7506463] (imputed)	N
609	chr6_mcf_hap5	3231106	3231107	rs652888	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	EHMT2	rs652888-G	NR	3E-10		0.0207108	[0.014-0.027] unit decrease	Affymetrix [319769] (imputed)	N
609	chr6_mcf_hap5	3231106	3231107	rs652888	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	EHMT2	rs652888-G	NR	1E-9		0.0200442	[0.014-0.027] unit decrease	Affymetrix [319769] (imputed)	N
609	chr6_mcf_hap5	3231106	3231107	rs652888	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	EHMT2	rs652888-G	NR	1E-9		0.02033	[0.014-0.027] unit decrease	Affymetrix [321169] (imputed)	N
609	chr6_mcf_hap5	3231106	3231107	rs652888	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p21.33	EHMT2	rs652888-G	NR	2E-8		0.0206131	[0.013-0.028] unit decrease	Affymetrix [323858] (imputed)	N
609	chr6_mcf_hap5	3231106	3231107	rs652888	27157822	Hallberg P	2016-05-03	Lancet Diabetes Endocrinol	Genetic variants associated with antithyroid drug-induced agranulocytosis: a genome-wide association study in a European population.	Anti-thyroid drug induced agranulocytosis	38 European ancestry cases, 1 case, 5,170 European ancestry controls	NA	6p21.33	EHMT2	rs652888-?	NR	2E-11		4.73	[3.00-7.44]	Illumina [9380034] (imputed)	N
609	chr6_mcf_hap5	3231106	3231107	rs652888	25802187	Jiang DK	2015-04-28	Hepatology	Genetic variants in five novel loci including CFB and CD40 predispose to chronic hepatitis B.	Chronic hepatitis B infection	2,514 Chinese ancestry cases, 1,130 Chinese ancestry controls	6,600 Chinese ancestry cases, 8,127 Chinese ancestry controls	6p21.33	EHMT2	rs652888-G	0.24	1E-6		1.14	[1.08-1.19]	Illumina [3680900] (imputed)	N
609	chr6_mcf_hap5	3231106	3231107	rs652888	23760081	Kim YJ	2013-06-10	Hum Mol Genet	A genome-wide association study identified new variants associated with the risk of chronic hepatitis B.	Chronic hepatitis B infection	400 Korean ancestry cases, 1,000 Korean ancestry controls	971 Korean ancestry cases, 1,938 Korean ancestry controls	6p21.33	EHMT2	rs652888-?	NR	7E-13		1.38	[1.22-1.57]	Illumina [719265]	N
609	chr6_mcf_hap5	3231106	3231107	rs652888	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.33	EHMT2	rs652888-C	0.2021	3E-46		2.71	[NR]	Illumina [242824]	N
609	chr6_mcf_hap5	3231341	3231342	rs2844458	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	EHMT2	rs2844458-A	NR	5E-9		0.0178304	[0.012-0.024] unit increase	Affymetrix [319769] (imputed)	N
609	chr6_mcf_hap5	3231341	3231342	rs2844458	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	EHMT2	rs2844458-A	NR	3E-8		0.0170038	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
609	chr6_mcf_hap5	3235942	3235943	rs486416	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	6p21.33		rs486416-A	0.6376	6E-9		0.013	[0.0091-0.0169] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
609	chr6_mcf_hap5	3235942	3235943	rs486416	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	6p21.33	EHMT2	rs486416-G	0.34730000000000005	1E-9		1.0203034		Affymetrix [11880941] (imputed)	N
609	chr6_mcf_hap5	3238402	3238403	rs34929649	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	EHMT2	rs34929649-C	NR	3E-13		0.0219327	[0.016-0.028] unit increase	Affymetrix [321169] (imputed)	N
609	chr6_mcf_hap5	3240708	3240709	rs115699278	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p21.33	EHMT2	rs115699278-T	0.011501	2E-9		0.06559309	[0.044-0.087] unit decrease	Affymetrix [93095623] (imputed)	N
609	chr6_mcf_hap5	3242755	3242756	rs115062572	33841421	Li J	2021-03-25	Front Immunol	Variants at the MHC Region Associate With Susceptibility to <i>Clostridioides difficile</i> Infection: A Genome-Wide Association Study Using Comprehensive Electronic Health Records.	Clostridioides difficle infection in antibiotics-users	587 European ancestry cases, 3,166 European ancestry controls	NA	6p21.33	ZBTB12	rs115062572-T	0.022	1E-6		2.29	[1.7-2.98]	Illumina [64973696] (imputed)	N
609	chr6_mcf_hap5	3242755	3242756	rs115062572	33841421	Li J	2021-03-25	Front Immunol	Variants at the MHC Region Associate With Susceptibility to <i>Clostridioides difficile</i> Infection: A Genome-Wide Association Study Using Comprehensive Electronic Health Records.	Clostridioides difficle infection	1,160 European ancestry cases, 14,144 European ancestry controls	NA	6p21.33	ZBTB12, EHMT2, C2, CYP21A2	rs115062572-T	0.0203	4E-6		1.74	[1.41-2.08]	Illumina [64973696] (imputed)	N
609	chr6_mcf_hap5	3242755	3242756	rs115062572	32641083	Hillary RF	2020-07-08	Genome Med	Multi-method genome- and epigenome-wide studies of inflammatory protein levels in healthy older adults.	Tumor necrosis factor beta levels	982 Scottish ancestry individuals	NA	6p21.33	NR	rs115062572-T	0.01979	5E-10		1.23251	[0.84-1.62] unit decrease	Illumina [7903493] (imputed)	N
609	chr6_mcf_hap5	3242755	3242756	rs115062572	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.33		rs115062572-T	0.02316600000000002	2E-8		1.0846895	[1.05-1.11]	Affymetrix, Illumina [9851866] (imputed)	N
609	chr6_mcf_hap5	3243047	3243048	rs17207748	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		EHMT2	rs17207748-?	NR	6E-9	(male)	2.35655	[NR] unit decrease	Affymetrix [NR] (imputed)	N
609	chr6_mcf_hap5	3243312	3243313	rs2243873	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	6p21.33	SLC44A4, EHMT2, STK19, CYP21A2, TNXB	rs2243873-?	NR	4E-11				Affymetrix, Illumina [18800000] (imputed)	N
609	chr6_mcf_hap5	3243312	3243313	rs2243873	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	6p21.33	SLC44A4, EHMT2, STK19, CYP21A2, TNXB	rs2243873-?	NR	3E-14	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
609	chr6_mcf_hap5	3243312	3243313	rs2243873	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	6p21.33	SLC44A4, EHMT2, STK19, CYP21A2, TNXB	rs2243873-?	NR	6E-10				Affymetrix, Illumina [18800000] (imputed)	N
609	chr6_mcf_hap5	3243312	3243313	rs2243873	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	6p21.33	SLC44A4, EHMT2, STK19, CYP21A2, TNXB	rs2243873-?		7E-13	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
609	chr6_mcf_hap5	3243312	3243313	rs2243873	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	6p21.33	SLC44A4, EHMT2, STK19, CYP21A2, TNXB	rs2243873-?	NR	4E-10				Affymetrix, Illumina [18800000] (imputed)	N
609	chr6_mcf_hap5	3243312	3243313	rs2243873	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	6p21.33	SLC44A4, EHMT2, STK19, CYP21A2, TNXB	rs2243873-?	NR	1E-10	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
609	chr6_mcf_hap5	3243312	3243313	rs2243873	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	6p21.33	SLC44A4, EHMT2, STK19, CYP21A2, TNXB	rs2243873-?	NR	6E-9				Affymetrix, Illumina [18800000] (imputed)	N
609	chr6_mcf_hap5	3243312	3243313	rs2243873	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	6p21.33	SLC44A4, EHMT2, STK19, CYP21A2, TNXB	rs2243873-?	NR	3E-9	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
609	chr6_mcf_hap5	3244417	3244418	rs115884658	32534018	Liu X	2020-06-10	Brain Behav Immun	Genetic factors underlying the bidirectional relationship between autoimmune and mental disorders - findings from a Danish population-based study.	Autoimmune traits	1,383 Danish ancestry cases, 62,656 Danish ancestry controls	NA	6p21.33	NR	rs115884658-A	0.047	2E-15		1.83	[1.6-2.1]	NR [7721839] (imputed)	N
609	chr6_mcf_hap5	3244417	3244418	rs115884658	29358691	Bonas-Guarch S	2018-01-22	Nat Commun	Re-analysis of public genetic data reveals a rare X-chromosomal variant associated with type 2 diabetes.	Type 2 diabetes	7,522 European ancestry cases, 50,446 European ancestry controls	35,789 African-American, East Asian, South Asian, European or Hispanic cases, 56,738 African-American, East Asian, South Asian, European or Hispanic controls	6p21.33	EHMT2	rs115884658-A	NR	3E-10		1.21	[1.14-1.29]	Affymetrix, Illumina [1918233] (imputed)	N
609	chr6_mcf_hap5	3244426	3244427	rs7887	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein EEF2K	5,361 Icelandic ancestry individuals	NA	6p21.33		rs7887-T	0.3571	6E-30		0.225707	[0.19-0.26] unit decrease	Illumina [7506463] (imputed)	N
609	chr6_mcf_hap5	3244426	3244427	rs7887	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C4A;C4B	5,362 Icelandic ancestry individuals	NA	6p21.33		rs7887-T	0.3571	8E-212		0.572662	[0.54-0.61] unit decrease	Illumina [7506463] (imputed)	N
609	chr6_mcf_hap5	3244553	3244554	rs2844456	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p21.33	NR	rs2844456-C	0.06	7E-13		0.82	[0.78-0.87]	Affymetrix [9886854] (imputed)	N
609	chr6_mcf_hap5	3244553	3244554	rs2844456	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p21.33	NR	rs2844456-C	0.06	9E-13			[NR]	Affymetrix [9886854] (imputed)	N
609	chr6_mcf_hap5	3244553	3244554	rs2844456	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in non-current smokers	16,488 European ancestry cases, 169,688 European ancestry controls	NA	6p21.33	NR	rs2844456-C	0.06	9E-13		0.82	[0.78-0.87]	Affymetrix [9886854] (imputed)	N
609	chr6_mcf_hap5	3244553	3244554	rs2844456	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	6p21.33	NR	rs2844456-?		4E-16	(AGER)	0.6356	[NR] unit decrease	Illumina [NR]	N
609	chr6_mcf_hap5	3246012	3246013	rs118097312	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Red blood cell count	108,794 Japanese ancestry individuals	NA	6p21.33	NR	rs118097312-?	NR	1E-10		0.05623	[0.039-0.073] unit decrease novel	Illumina [6108953] (imputed)	N
609	chr6_mcf_hap5	3247135	3247136	rs9267663	22566634	Benjamin DJ	2012-05-07	Proc Natl Acad Sci U S A	The genetic architecture of economic and political preferences.	Economic and political preferences (environmentalism)	9,617 European ancestry individuals	NA	6p21.33	EHMT2	rs9267663-T	NR	6E-6		0.29	[0.16-0.42] unit decrease	Illumina [628922]	N
609	chr6_mcf_hap5	3248647	3248648	rs114508013	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs114508013-G	0.9640625	5E-41	(CFB, 4129_72_1)	0.89926857	[0.77-1.03] unit increase	Illumina [> 1000000] (imputed)	N
609	chr6_mcf_hap5	3248647	3248648	rs114508013	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs114508013-G	0.9640625	4E-14	(FTMT, 8048_9_3)	0.51218635	[0.38-0.64] unit decrease	Illumina [> 1000000] (imputed)	N
609	chr6_mcf_hap5	3248647	3248648	rs114508013	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs114508013-G	0.9640625	3E-16	(DEFB119, 13455_10_3)	0.5455914	[0.42-0.68] unit decrease	Illumina [> 1000000] (imputed)	N
609	chr6_mcf_hap5	3248647	3248648	rs114508013	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs114508013-G	0.9640625	3E-11	(MICA, 2730_58_2)	0.45406085	[0.32-0.59] unit increase	Illumina [> 1000000] (imputed)	N
609	chr6_mcf_hap5	3248647	3248648	rs114508013	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs114508013-G	0.9640625	2E-129	(TNXB, 5698_60_3)	1.5771569	[1.46-1.7] unit increase	Illumina [> 1000000] (imputed)	N
609	chr6_mcf_hap5	3248647	3248648	rs114508013	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs114508013-G	0.9640625	1E-66	(C2, 3186_2_2)	1.1762669	[1.05-1.31] unit increase	Illumina [> 1000000] (imputed)	N
609	chr6_mcf_hap5	3248647	3248648	rs114508013	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs114508013-G	0.9640625	1E-60	(ISG15, 14148_2_3)	1.1050375	[0.98-1.23] unit increase	Illumina [> 1000000] (imputed)	N
609	chr6_mcf_hap5	3249004	3249005	rs45462992	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6p21.33		rs45462992-?	NR	4E-6		0.86602	[0.8-0.93]	NR [685523]	N
609	chr6_mcf_hap5	3249555	3249556	rs2844455	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	C2, ZBTB12	rs2844455-T	NR	2E-11		0.0245279	[0.017-0.032] unit increase	Affymetrix [319769] (imputed)	N
609	chr6_mcf_hap5	3249555	3249556	rs2844455	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	C2, ZBTB12	rs2844455-T	NR	5E-11		0.0238761	[0.017-0.031] unit increase	Affymetrix [319769] (imputed)	N
609	chr6_mcf_hap5	3249555	3249556	rs2844455	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	C2, ZBTB12	rs2844455-T	NR	2E-11		0.0246589	[0.017-0.032] unit increase	Affymetrix [321169] (imputed)	N
609	chr6_mcf_hap5	3250208	3250209	rs558702	24871463	Armstrong DL	2014-05-29	Genes Immun	GWAS identifies novel SLE susceptibility genes and explains the association of the HLA region.	Systemic lupus erythematosus	725 European ancestry cases, 2,438 European ancestry controls	NA	6p21.33	C2	rs558702-A	0.1	8E-21		2.276	[2.097-2.47]	Illumina [NR]	N
609	chr6_mcf_hap5	3250738	3250739	rs9267665	21764829	Png E	2011-07-15	Hum Mol Genet	A genome-wide association study of hepatitis B vaccine response in an Indonesian population reveals multiple independent risk variants in the HLA region.	Hepatitis B vaccine response	1,683 Indonesian ancestry individuals	1,931 Indonesian ancestry individuals	6p21.33	HLA	rs9267665-?	NR	1E-17		2.05	[1.64-2.57]	Illumina [455508]	N
609	chr6_mcf_hap5	3255588	3255589	rs586346	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Coffee consumption	335,909 European ancestry individuals	39,924 European ancestry individuals	6p21.33	C2	rs586346-T	0.3648	7E-10		0.0095	[0.0066-0.0124] unit increase	Affymetrix [~ 7740000] (imputed)	N
609	chr6_mcf_hap5	3255918	3255919	rs1313996	32339537	Roberts V	2020-04-24	J Invest Dermatol	Genome wide association study identifies genetic associations with perceived age.	Youthful appearance (self-reported)	423,992 European ancestry individuals	NA	6p21.33	C2	rs1313996-T	0.363603	4E-11		0.970678	NR	Affymetrix [~ 9600000] (imputed)	N
609	chr6_mcf_hap5	3255918	3255919	rs1313996	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p21.33	NR	rs1313996-?	NR	7E-17		0.1086	[0.083-0.134] unit increase	Illumina [at least 560000] (imputed)	N
609	chr6_mcf_hap5	3257334	3257335	rs116508221	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		C2	rs116508221-?	NR	8E-10	(male)	3.05228	[NR] unit decrease	Affymetrix [NR] (imputed)	N
609	chr6_mcf_hap5	3258309	3258310	rs519417	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p21.33	NR	rs519417-?	NR	1E-6		4.887	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
609	chr6_mcf_hap5	3258309	3258310	rs519417	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	6p21.33	ZBTB12, CFB	rs519417-G	NR	7E-11		0.207694	[0.15-0.27] unit increase	Illumina [at least 950000] (imputed)	N
609	chr6_mcf_hap5	3258309	3258310	rs519417	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p21.33	NR	rs519417-?	NR	3E-9		0.0882	[0.059-0.117] unit increase	Illumina [at least 560000] (imputed)	N
609	chr6_mcf_hap5	3258371	3258372	rs622871	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	6p21.33	NR	rs622871-?	NR	7E-18	(male)	0.32361	[0.25-0.4] unit decrease	Affymetrix [7794483] (imputed)	N
609	chr6_mcf_hap5	3258371	3258372	rs622871	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	6p21.33	NR	rs622871-?	NR	6E-19	(female)	0.23136	[0.18-0.28] unit decrease	Affymetrix [7794483] (imputed)	N
609	chr6_mcf_hap5	3258371	3258372	rs622871	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	6p21.33	NR	rs622871-?	NR	5E-32		0.28011	[0.23-0.33] unit decrease	Affymetrix [7794483] (imputed)	N
609	chr6_mcf_hap5	3258371	3258372	rs622871	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA	6p21.33	NR	rs622871-?	NR	2E-6		0.0384	[0.023-0.054] unit increase	Illumina [at least 560000] (imputed)	N
609	chr6_mcf_hap5	3258371	3258372	rs622871	28762467	Wadelius M	2017-08-01	Clin Pharmacol Ther	Sulfasalazine-Induced Agranulocytosis Is Associated With the Human Leukocyte Antigen Locus.	Sulfasalazine-induced agranulocytosis	36 European ancestry cases, 5,170 European ancestry untreated controls	NA	6p21.33	C2	rs622871-?	NR	7E-7		3.29	[2.06-5.27]	Illumina [9380034] (imputed)	N
609	chr6_mcf_hap5	3258371	3258372	rs622871	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.33	C2	rs622871-G	NR	4E-9	(women)	0.0303318	[0.02-0.04] unit decrease	Illumina [13520550] (imputed)	N
609	chr6_mcf_hap5	3258371	3258372	rs622871	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.33	C2	rs622871-G	NR	1E-10		0.0232703	[0.016-0.03] unit decrease	Illumina [13520550] (imputed)	N
609	chr6_mcf_hap5	3259034	3259035	rs3128761	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)(bidirectional)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.33		rs3128761-A	NR	4E-7				Affymetrix [7846216] (imputed)	N
609	chr6_mcf_hap5	3260687	3260688	rs561312719	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs561312719-C	0.067	6E-73	(Ubiquitin carboxyl-terminal hydrolase 25, USP25.9215.117.3)	0.94	[0.84-1.04] unit increase	Affymetrix [10572788] (imputed)	N
609	chr6_mcf_hap5	3261188	3261189	rs532086	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	C2	rs532086-C	NR	2E-14		0.0323897	[0.024-0.041] unit decrease	Affymetrix [323858] (imputed)	N
609	chr6_mcf_hap5	3261188	3261189	rs532086	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	C2	rs532086-C	NR	1E-12		0.0302037	[0.022-0.039] unit decrease	Affymetrix [127266] (imputed)	N
609	chr6_mcf_hap5	3261188	3261189	rs532086	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	C2	rs532086-C	NR	9E-10		0.0255355	[0.017-0.034] unit increase	Affymetrix [323123] (imputed)	N
609	chr6_mcf_hap5	3261188	3261189	rs532086	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	6p21.33	C2	rs532086-T	0.859	3E-6		0.0016	[0.00062-0.00258] unit increase	Affymetrix [NR] (imputed)	N
609	chr6_mcf_hap5	3261611	3261612	rs685031	30104761	Zhou W	2018-08-13	Nat Genet	Efficiently controlling for case-control imbalance and sample relatedness in large-scale genetic association studies.	Coronary artery disease	31,355 European ancestry cases, 377,103 European ancestry controls	NA	6p21.33	C2	rs685031-A	0.389	9E-9				Affymetrix [28000000] (imputed)	N
609	chr6_mcf_hap5	3261611	3261612	rs685031	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	6p21.33	C2	rs685031-A	0.646	5E-10		0.043	[0.029-0.057] unit increase	Affymetrix [7947838] (imputed)	N
609	chr6_mcf_hap5	3261904	3261905	rs2844452	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	C2	rs2844452-G	NR	6E-12		0.0195783	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
609	chr6_mcf_hap5	3261904	3261905	rs2844452	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	C2	rs2844452-G	NR	6E-11		0.0206929	[0.015-0.027] unit increase	Affymetrix [323858] (imputed)	N
609	chr6_mcf_hap5	3261904	3261905	rs2844452	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	C2	rs2844452-G	NR	4E-11		0.0187691	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
609	chr6_mcf_hap5	3261904	3261905	rs2844452	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	C2	rs2844452-G	NR	2E-9		0.0190129	[0.013-0.025] unit increase	Affymetrix [127266] (imputed)	N
609	chr6_mcf_hap5	3263572	3263573	rs9267673	29185836	Chen MH	2017-11-29	Platelets	Exome-chip meta-analysis identifies association between variation in ANKRD26 and platelet aggregation.	Platelet aggregation	3,664 European ancestry individuals, 549 Old Order Amish (founder/genetic isolate) individuals	1,184 European ancestry individuals, 613 African American individuals	6p21.33	C2	rs9267673-T	0.114	7E-6	(collagen 1)	0.173	[0.097-0.249] unit decrease	Illumina [129094]	N
609	chr6_mcf_hap5	3263572	3263573	rs9267673	21105107	Clifford RJ	2010-12-01	Hepatology	Genetic variations at loci involved in the immune response are risk factors for hepatocellular carcinoma.	Hepatocellular carcinoma	180 Korean ancestry cases, 271 Korean ancestry controls	206 Korean ancestry cases, 416 East Asian ancestry controls,	6p21.33	C2	rs9267673-?	0.08	2E-6		1.97	[1.47-2.64]	Affymetrix [658897]	N
609	chr6_mcf_hap5	3263850	3263851	rs644045	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	6p21.33	C2	rs644045-A	0.3528	3E-13		0.0413	[0.03-0.052] unit decrease	Affymetrix [at least 7947838] (imputed)	N
609	chr6_mcf_hap5	3263850	3263851	rs644045	28881265	Sobalska-Kwapis M	2017-09-01	Eur J Obstet Gynecol Reprod Biol	New variants near RHOJ and C2, HLA-DRA region and susceptibility to endometriosis in the Polish population-The genome-wide association study.	Endometriosis	171 European ancestry cases, 2,934 European ancestry controls	NA	6p21.33	C2, LOC101929163, HLA-DRA	rs644045-T	0.2853	2E-8		1.955	[1.541-2.48]	Illumina [274400]	N
609	chr6_mcf_hap5	3264715	3264716	rs3130682	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	6p21.33	C2	rs3130682-T	NR	1E-16		0.0630215	[0.048-0.078] unit decrease	Illumina [13520550] (imputed)	N
609	chr6_mcf_hap5	3265822	3265823	rs3128759	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	153,512 East Asian ancestry individuals	NA	6p21.33		rs3128759-T	0.915106	7E-17		0.0465594	[0.036-0.058] unit increase	Illumina [13479135] (imputed)	N
609	chr6_mcf_hap5	3267152	3267153	rs115009784	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL15	5,365 Icelandic ancestry individuals	NA	6p21.33		rs115009784-A	0.04844	1E-13		0.324224	[0.24-0.41] unit decrease	Illumina [7506463] (imputed)	N
609	chr6_mcf_hap5	3268260	3268261	rs3130683	28714975	Nelson CP	2017-07-17	Nat Genet	Association analyses based on false discovery rate implicate new loci for coronary artery disease.	Coronary artery disease (myocardial infarction, percutaneous transluminal coronary angioplasty, coronary artery bypass grafting, angina or chromic ischemic heart disease)	18,467 European and unknown ancestry cases, 45,264 European and unknown ancestry controls	57,347 European and unknown ancestry cases, 219,521 European and unknown ancestry controls	6p21.33	C2	rs3130683-T	0.86	3E-8		1.08	[1.05-1.11]	Affymetrix [9149595] (imputed)	N
609	chr6_mcf_hap5	3272377	3272378	rs497309	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in diabetes	70,762 European ancestry individuals, 20,967 African American individuals	NA	6p21.33	C2	rs497309-A	0.902	5E-12		1.009	[0.72-1.3] unit increase	Affymetrix [NR] (imputed)	N
609	chr6_mcf_hap5	3272534	3272535	rs9267677	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	6p21.33	Intergenic	rs9267677-T	0.8962	7E-16	(MTAG)	0.0218	[0.017-0.027] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
609	chr6_mcf_hap5	3272534	3272535	rs9267677	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6p21.33		rs9267677-T	0.9029	4E-14		0.018	[0.013-0.023] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
609	chr6_mcf_hap5	3272534	3272535	rs9267677	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6p21.33	Intergenic	rs9267677-T	0.9029	8E-18	(MTAG)	0.0191	[0.015-0.023] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
609	chr6_mcf_hap5	3272534	3272535	rs9267677	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	6p21.33	Intergenic	rs9267677-T	0.9038	2E-9	(MTAG)	0.0233	[0.016-0.031] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
609	chr6_mcf_hap5	3273837	3273838	rs2734335	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	C2	rs2734335-A	NR	2E-8		0.0157901	[0.01-0.021] unit decrease	Affymetrix [321016] (imputed)	N
609	chr6_mcf_hap5	3274249	3274250	rs556679	33893285	Guindo-Martinez M	2021-04-23	Nat Commun	The impact of non-additive genetic associations on age-related complex diseases.	Age-related macular degeneration	3,685 European ancestry cases, 52,952 European ancestry controls	NA	6p21.33		rs556679-T	0.1113519	5E-21		0.66		Affymetrix [15377238] (imputed)	N
609	chr6_mcf_hap5	3275867	3275868	rs7746553	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	6p21.33	C2	rs7746553-C	0.848517	5E-8		0.0160902	[0.01-0.022] unit increase	NR [16516521] (imputed)	N
610	chr6_mcf_hap5	3277113	3277114	rs9283893	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	SKIV2L, C2, XXbac-BPG116M5.17, NELFE, MIR1236, DXO, STK19	rs9283893-A	0.0446339	1E-32	(Neutrophil collagenase)	1.199	[1.01-1.39] unit increase	Affymetrix [509946]	N
610	chr6_mcf_hap5	3280597	3280598	rs184265581	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	6p21.33	NR	rs184265581-C	0.012356999999999951	6E-27		0.132322	[0.11-0.16] unit increase	Affymetrix [16580851] (imputed)	N
610	chr6_mcf_hap5	3283647	3283648	rs9332739	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CFB	5,365 Icelandic ancestry individuals	NA	6p21.33		rs9332739-C	0.0495	8E-121		0.960939	[0.88-1.04] unit decrease	Illumina [7506463] (imputed)	N
610	chr6_mcf_hap5	3283647	3283648	rs9332739	22705344	Sobrin L	2012-06-15	Ophthalmology	Heritability and genome-wide association study to assess genetic differences between advanced age-related macular degeneration subtypes.	Age-related macular degeneration (geographic atrophy)	819 European ancestry geographic atrophy cases, 4,134 European ancestry controls	NA	6p21.33	C2	rs9332739-?	0.955	1E-6		2.63	[1.79-3.85]	Affymetrix, Illumina [6036699] (imputed)	N
610	chr6_mcf_hap5	3283647	3283648	rs9332739	22705344	Sobrin L	2012-06-15	Ophthalmology	Heritability and genome-wide association study to assess genetic differences between advanced age-related macular degeneration subtypes.	Age-related macular degeneration (choroidal neovascularisation)	1,775 European ancestry choroidal neovascularization cases, 4,134 European ancestry controls	4,515 European and unknown ancestry choroidal neovascularization cases, 15,240 European and unknown ancestry controls	6p21.33	C2	rs9332739-?	0.955	2E-8		2.08	[1.61-2.7]	Affymetrix, Illumina [6036699] (imputed)	N
610	chr6_mcf_hap5	3283647	3283648	rs9332739	21665990	Yu Y	2011-06-10	Hum Mol Genet	Common variants near FRK/COL10A1 and VEGFA are associated with advanced age-related macular degeneration.	Age-related macular degeneration	2,594 European ancestry cases, 4,134 European ancestry controls	5,640 European ancestry cases, 52,174 European ancestry controls	6p21.33	C2	rs9332739-?	0.96	2E-23		2.17	[NR]	Affymetrix [6036699] (imputed)	N
610	chr6_mcf_hap5	3284972	3284973	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ZNF276	5,363 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	6E-17		0.263299	[0.2-0.32] unit increase	Illumina [7506463] (imputed)	N
610	chr6_mcf_hap5	3284972	3284973	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ZAP70	5,357 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	2E-20		0.28156	[0.22-0.34] unit increase	Illumina [7506463] (imputed)	N
610	chr6_mcf_hap5	3284972	3284973	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein WIF1	5,349 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	4E-12		0.207313	[0.15-0.27] unit increase	Illumina [7506463] (imputed)	N
610	chr6_mcf_hap5	3284972	3284973	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein UTS2	5,348 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	2E-13		0.213721	[0.16-0.27] unit increase	Illumina [7506463] (imputed)	N
610	chr6_mcf_hap5	3284972	3284973	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TPM2	5,353 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	6E-19		0.271948	[0.21-0.33] unit increase	Illumina [7506463] (imputed)	N
610	chr6_mcf_hap5	3284972	3284973	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TMCC3	5,355 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	6E-19		0.272099	[0.21-0.33] unit increase	Illumina [7506463] (imputed)	N
610	chr6_mcf_hap5	3284972	3284973	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SYNCRIP	5,354 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	3E-16		0.244214	[0.19-0.3] unit increase	Illumina [7506463] (imputed)	N
610	chr6_mcf_hap5	3284972	3284973	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RPS10	5,348 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	8E-14		0.223731	[0.16-0.28] unit increase	Illumina [7506463] (imputed)	N
610	chr6_mcf_hap5	3284972	3284973	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RNF43	5,340 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	2E-12		0.20687	[0.15-0.26] unit increase	Illumina [7506463] (imputed)	N
610	chr6_mcf_hap5	3284972	3284973	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RGS8	5,356 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	5E-18		0.263545	[0.2-0.32] unit increase	Illumina [7506463] (imputed)	N
610	chr6_mcf_hap5	3284972	3284973	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RAD51	5,354 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	2E-17		0.254863	[0.2-0.31] unit increase	Illumina [7506463] (imputed)	N
610	chr6_mcf_hap5	3284972	3284973	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RAB5C	5,347 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	8E-15		0.22726	[0.17-0.28] unit increase	Illumina [7506463] (imputed)	N
610	chr6_mcf_hap5	3284972	3284973	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RAB17	5,352 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	2E-16		0.244122	[0.19-0.3] unit increase	Illumina [7506463] (imputed)	N
610	chr6_mcf_hap5	3284972	3284973	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PTPN1	5,343 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	2E-12		0.199884	[0.14-0.26] unit increase	Illumina [7506463] (imputed)	N
610	chr6_mcf_hap5	3284972	3284973	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein POLR1C	5,352 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	4E-15		0.236472	[0.18-0.3] unit increase	Illumina [7506463] (imputed)	N
610	chr6_mcf_hap5	3284972	3284973	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PIK3CG	5,349 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	3E-18		0.254662	[0.2-0.31] unit increase	Illumina [7506463] (imputed)	N
610	chr6_mcf_hap5	3284972	3284973	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PCDHB4	5,352 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	1E-14		0.230172	[0.17-0.29] unit increase	Illumina [7506463] (imputed)	N
610	chr6_mcf_hap5	3284972	3284973	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PCDHB14	5,352 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	9E-17		0.252266	[0.19-0.31] unit increase	Illumina [7506463] (imputed)	N
610	chr6_mcf_hap5	3284972	3284973	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NRXN3	5,346 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	3E-14		0.227034	[0.17-0.29] unit increase	Illumina [7506463] (imputed)	N
610	chr6_mcf_hap5	3284972	3284973	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NDUFB4	5,364 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	9E-14		0.235159	[0.17-0.3] unit increase	Illumina [7506463] (imputed)	N
610	chr6_mcf_hap5	3284972	3284973	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MST1R	5,341 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	7E-16		0.227077	[0.17-0.28] unit increase	Illumina [7506463] (imputed)	N
610	chr6_mcf_hap5	3284972	3284973	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MOCS3	5,351 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	8E-15		0.232526	[0.17-0.29] unit increase	Illumina [7506463] (imputed)	N
610	chr6_mcf_hap5	3284972	3284973	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein KLK6	5,348 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	1E-15		0.225461	[0.17-0.28] unit increase	Illumina [7506463] (imputed)	N
610	chr6_mcf_hap5	3284972	3284973	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein KLK12	5,359 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	1E-19		0.280976	[0.22-0.34] unit increase	Illumina [7506463] (imputed)	N
610	chr6_mcf_hap5	3284972	3284973	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL18R1	5,351 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	5E-12		0.21193	[0.15-0.27] unit increase	Illumina [7506463] (imputed)	N
610	chr6_mcf_hap5	3284972	3284973	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL10RA	5,353 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	1E-13		0.230011	[0.17-0.29] unit increase	Illumina [7506463] (imputed)	N
610	chr6_mcf_hap5	3284972	3284973	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IGFL3	5,350 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	5E-15		0.237003	[0.18-0.3] unit increase	Illumina [7506463] (imputed)	N
610	chr6_mcf_hap5	3284972	3284973	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GBP6	5,348 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	5E-12		0.206328	[0.15-0.26] unit increase	Illumina [7506463] (imputed)	N
610	chr6_mcf_hap5	3284972	3284973	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FRZB	5,350 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	5E-13		0.207917	[0.15-0.26] unit increase	Illumina [7506463] (imputed)	N
610	chr6_mcf_hap5	3284972	3284973	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FCER1A	5,348 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	1E-19		0.272221	[0.21-0.33] unit increase	Illumina [7506463] (imputed)	N
610	chr6_mcf_hap5	3284972	3284973	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DSG1	5,349 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	4E-16		0.242273	[0.18-0.3] unit increase	Illumina [7506463] (imputed)	N
610	chr6_mcf_hap5	3284972	3284973	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DCUN1D5	5,344 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	2E-13		0.212735	[0.16-0.27] unit increase	Illumina [7506463] (imputed)	N
610	chr6_mcf_hap5	3284972	3284973	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CRABP1	5,340 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	4E-13		0.209239	[0.15-0.27] unit increase	Illumina [7506463] (imputed)	N
610	chr6_mcf_hap5	3284972	3284973	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CLEC12B	5,357 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	4E-18		0.267882	[0.21-0.33] unit increase	Illumina [7506463] (imputed)	N
610	chr6_mcf_hap5	3284972	3284973	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CDK5;CDK5R1	5,339 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	2E-15		0.225529	[0.17-0.28] unit increase	Illumina [7506463] (imputed)	N
610	chr6_mcf_hap5	3284972	3284973	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CCL1	5,354 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	1E-15		0.242251	[0.18-0.3] unit increase	Illumina [7506463] (imputed)	N
610	chr6_mcf_hap5	3284972	3284973	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CA4	5,356 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	2E-13		0.225651	[0.17-0.29] unit increase	Illumina [7506463] (imputed)	N
610	chr6_mcf_hap5	3284972	3284973	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C2orf40	5,353 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	3E-12		0.217148	[0.16-0.28] unit increase	Illumina [7506463] (imputed)	N
610	chr6_mcf_hap5	3284972	3284973	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein BCL2L10	5,355 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	9E-14		0.231319	[0.17-0.29] unit increase	Illumina [7506463] (imputed)	N
610	chr6_mcf_hap5	3284972	3284973	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein BCL2L1	5,350 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	1E-17		0.257737	[0.2-0.32] unit increase	Illumina [7506463] (imputed)	N
610	chr6_mcf_hap5	3284972	3284973	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein AZGP1	5,362 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	1E-19		0.281057	[0.22-0.34] unit increase	Illumina [7506463] (imputed)	N
610	chr6_mcf_hap5	3284972	3284973	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ANXA10	5,345 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	6E-13		0.218401	[0.16-0.28] unit increase	Illumina [7506463] (imputed)	N
610	chr6_mcf_hap5	3284972	3284973	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein AKT3	5,346 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	2E-14		0.217044	[0.16-0.27] unit increase	Illumina [7506463] (imputed)	N
610	chr6_mcf_hap5	3284972	3284973	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein AHSA1	5,351 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	2E-15		0.242628	[0.18-0.3] unit increase	Illumina [7506463] (imputed)	N
610	chr6_mcf_hap5	3284972	3284973	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ADGRE5	5,359 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	3E-18		0.271861	[0.21-0.33] unit increase	Illumina [7506463] (imputed)	N
610	chr6_mcf_hap5	3284972	3284973	rs1042663	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs1042663-A	0.095	5E-18	(ER membrane protein complex subunit 4, EMC4.13516.46.3)	0.36	[0.28-0.44] unit decrease	Affymetrix [10572788] (imputed)	N
610	chr6_mcf_hap5	3285852	3285853	rs9380272	20385819	Chen W	2010-04-12	Proc Natl Acad Sci U S A	Genetic variants near TIMP3 and high-density lipoprotein-associated loci influence susceptibility to age-related macular degeneration.	Age-related macular degeneration	2,157 European ancestry cases, 1,150 European ancestry controls	7,892 European ancestry cases, 5,998 European ancestry controls, 678 Japanese ancestry cases, 336 Japanese ancestry controls	6p21.33	CFB, C2	rs9380272-A	0.012	2E-8		4.31	[2.76-6.87]	Illumina [~ 2500000] (imputed)	N
610	chr6_mcf_hap5	3286670	3286671	rs78593564	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PSMD11	5,350 Icelandic ancestry individuals	NA	6p21.33		rs78593564-A	0.05083	8E-12		0.281426	[0.2-0.36] unit decrease	Illumina [7506463] (imputed)	N
610	chr6_mcf_hap5	3286670	3286671	rs78593564	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL36A	5,364 Icelandic ancestry individuals	NA	6p21.33		rs78593564-A	0.05083	2E-64		0.72184	[0.64-0.81] unit decrease	Illumina [7506463] (imputed)	N
610	chr6_mcf_hap5	3286670	3286671	rs78593564	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL21	5,363 Icelandic ancestry individuals	NA	6p21.33		rs78593564-A	0.05083	3E-50		0.636403	[0.55-0.72] unit decrease	Illumina [7506463] (imputed)	N
610	chr6_mcf_hap5	3286670	3286671	rs78593564	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	6p21.33	HLA region	rs78593564-?	NR	3E-8	(EA)			Affymetrix, Illumina [10537485] (imputed)	N
610	chr6_mcf_hap5	3286670	3286671	rs78593564	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	6p21.33	HLA region	rs78593564-?	NR	1E-8				Affymetrix, Illumina [10537485] (imputed)	N
610	chr6_mcf_hap5	3287679	3287680	rs2293751	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	C2, CFB	rs2293751-A	NR	2E-15		0.0227001	[0.017-0.028] unit increase	Affymetrix [321169] (imputed)	N
610	chr6_mcf_hap5	3287679	3287680	rs2293751	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.33	C2, C2-AS1, CFB, DXO, EHMT2, MIR1236, NELFE, NEU1, SKIV2L, SLC44A4, STK19, ZBTB12	rs2293751-A		3E-8		1.06	[1.04-1.08]	Affymetrix, Illumina [NR]	N
610	chr6_mcf_hap5	3288603	3288604	rs497239	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ZAP70	5,359 Icelandic ancestry individuals	NA	6p21.33		rs497239-C	0.09998	3E-12		0.217124	[0.16-0.28] unit increase	Illumina [7506463] (imputed)	N
610	chr6_mcf_hap5	3288603	3288604	rs497239	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein KLRC3	5,354 Icelandic ancestry individuals	NA	6p21.33		rs497239-C	0.09998	1E-32		0.360834	[0.3-0.42] unit increase	Illumina [7506463] (imputed)	N
610	chr6_mcf_hap5	3288603	3288604	rs497239	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ENTPD3	5,332 Icelandic ancestry individuals	NA	6p21.33		rs497239-C	0.09998	3E-13		0.205425	[0.15-0.26] unit increase	Illumina [7506463] (imputed)	N
610	chr6_mcf_hap5	3290781	3290782	rs547154	32843070	Winkler TW	2020-08-26	BMC Med Genomics	Genome-wide association meta-analysis for early age-related macular degeneration highlights novel loci and insights for advanced disease.	Early age-related macular degeneration	14,034 European ancestry cases, 91,214 European ancestry controls	NA	6p21.33	C2	rs547154-G	0.91	1E-18		1.24	[1.19-1.29]	Affymetrix, Illumina [11702853] (imputed)	N
610	chr6_mcf_hap5	3293867	3293868	rs4151667	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	CFB	rs4151667-A	0.042	6E-53	(Complement factor B, CFB.4129.72.1)	0.91	[0.79-1.03] unit decrease	Affymetrix [10572788] (imputed)	N
610	chr6_mcf_hap5	3294022	3294023	rs12614	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CFB	5,365 Icelandic ancestry individuals	NA	6p21.33		rs12614-T	0.07594	2E-11		0.239951	[0.17-0.31] unit decrease	Illumina [7506463] (imputed)	N
610	chr6_mcf_hap5	3294022	3294023	rs12614	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	CFB	rs12614-T	0.087	7E-25	(Gremlin-1, GREM1.4449.67.3)	0.44	[0.36-0.52] unit increase	Affymetrix [10572788] (imputed)	N
610	chr6_mcf_hap5	3294022	3294023	rs12614	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	CFB	rs12614-T	0.087	1E-283	(Neutrophil collagenase, MMP8.2954.56.2)	1.33	[1.25-1.41] unit increase	Affymetrix [10572788] (imputed)	N
610	chr6_mcf_hap5	3294022	3294023	rs12614	25802187	Jiang DK	2015-04-28	Hepatology	Genetic variants in five novel loci including CFB and CD40 predispose to chronic hepatitis B.	Chronic hepatitis B infection	2,514 Chinese ancestry cases, 1,130 Chinese ancestry controls	6,600 Chinese ancestry cases, 8,127 Chinese ancestry controls	6p21.33	CFB	rs12614-T	0.92	1E-34		1.89	[1.69-2.08]	Illumina [3680900] (imputed)	N
610	chr6_mcf_hap5	3294023	3294024	rs641153	32492067	Ruffieux H	2020-06-03	PLoS Comput Biol	A fully joint Bayesian quantitative trait locus mapping of human protein abundance in plasma.	Protein quantitative trait loci	394 European ancestry individuals	548 European ancestry individuals	6p21.33	NR	rs641153-?	NR	4E-12	(Factor B)			Illumina [~ 4000000] (imputed)	N
610	chr6_mcf_hap5	3294023	3294024	rs641153	22705344	Sobrin L	2012-06-15	Ophthalmology	Heritability and genome-wide association study to assess genetic differences between advanced age-related macular degeneration subtypes.	Age-related macular degeneration (geographic atrophy)	819 European ancestry geographic atrophy cases, 4,134 European ancestry controls	NA	6p21.33	CFB	rs641153-?	0.899	2E-9		2.13	[1.69-2.7]	Affymetrix, Illumina [6036699] (imputed)	N
610	chr6_mcf_hap5	3294023	3294024	rs641153	22705344	Sobrin L	2012-06-15	Ophthalmology	Heritability and genome-wide association study to assess genetic differences between advanced age-related macular degeneration subtypes.	Age-related macular degeneration (choroidal neovascularisation)	1,775 European ancestry choroidal neovascularization cases, 4,134 European ancestry controls	4,515 European and unknown ancestry choroidal neovascularization cases, 15,240 European and unknown ancestry controls	6p21.33	CFB	rs641153-?	0.899	1E-17		2.22	[1.85-2.63]	Affymetrix, Illumina [6036699] (imputed)	N
610	chr6_mcf_hap5	3294023	3294024	rs641153	21665990	Yu Y	2011-06-10	Hum Mol Genet	Common variants near FRK/COL10A1 and VEGFA are associated with advanced age-related macular degeneration.	Age-related macular degeneration	2,594 European ancestry cases, 4,134 European ancestry controls	5,640 European ancestry cases, 52,174 European ancestry controls	6p21.33	CFB	rs641153-?	0.90	6E-31		1.85	[NR]	Affymetrix [6036699] (imputed)	N
610	chr6_mcf_hap5	3294023	3294024	rs641153	20385826	Neale BM	2010-04-12	Proc Natl Acad Sci U S A	Genome-wide association study of advanced age-related macular degeneration identifies a role of the hepatic lipase gene (LIPC).	Age-related macular degeneration	979 cases, 1,709 controls	868 European ancestry cases, 410 European ancestry controls, 4,921 cases, 3,824 controls	6p21.33	CFB, C2	rs641153-?	NR	2E-20				Affymetrix [632932]	N
610	chr6_mcf_hap5	3294778	3294779	rs1048709	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CFB	5,365 Icelandic ancestry individuals	NA	6p21.33		rs1048709-A	0.2856	2E-16		0.172241	[0.13-0.21] unit decrease	Illumina [7506463] (imputed)	N
610	chr6_mcf_hap5	3294778	3294779	rs1048709	31375628	Tengvall K	2019-08-02	Proc Natl Acad Sci U S A	Molecular mimicry between Anoctamin 2 and Epstein-Barr virus nuclear antigen 1 associates with multiple sclerosis risk.	Anti-anoctamin 2 antibody levels	11,936 European ancestry individuals	NA	6p21.33	NR	rs1048709-A	NR	3E-7		0.054	[0.029-0.079] unit increase	Illumina [615763]	N
610	chr6_mcf_hap5	3294987	3294988	rs4151669	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	DXO, C2, CFB, EHMT2, SLC44A4, EHMT2-AS1, ZBTB12, XXbac-BPG116M5.17, C2-AS1, NELFE, MIR1236, STK19, C4A	rs4151669-A	0.04112337	6E-28	(EA, Complement factor B)	1.17	[0.97-1.37] unit decrease	Affymetrix [509946]	N
610	chr6_mcf_hap5	3296243	3296244	rs537160	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p21.33	NR	rs537160-G	0.6394	3E-7		0.0063	[0.0039-0.0087] unit increase	NR [7666894] (imputed)	N
610	chr6_mcf_hap5	3296243	3296244	rs537160	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.33	XXbac-BPG116M5.17, CFB	rs537160-A	0.3352	9E-11		0.0478	[0.033-0.062] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
610	chr6_mcf_hap5	3296550	3296551	rs45600936	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	6p21.33	CFB	rs45600936-T	0.00839800000000002	4E-10		0.07604781	[0.052-0.1] unit decrease	Affymetrix [93095623] (imputed)	N
610	chr6_mcf_hap5	3296794	3296795	rs541862	29234017	Carayol J	2017-12-12	Nat Commun	Protein quantitative trait locus study in obesity during weight-loss identifies a leptin regulator.	Protein levels in obesity	494 European ancestry individuals	NA	6p21.33	NR	rs541862-?	NR	3E-11	(Factor B)	0.15	[0.1-0.2] unit increase	Illumina [4020654] (imputed)	N
610	chr6_mcf_hap5	3296794	3296795	rs541862	22694956	Cipriani V	2012-06-13	Hum Mol Genet	Genome-wide association study of age-related macular degeneration identifies associated variants in the TNXB-FKBPL-NOTCH4 region of chromosome 6p21.3.	Age-related macular degeneration	893 European ancestry cases, 2,199 European ancestry controls	1,411 European ancestry cases, 1,431 European ancestry controls	6p21.33	CFB	rs541862-T	0.99	9E-17		1.89	[1.61-2.17]	Illumina [2272849] (imputed)	N
610	chr6_mcf_hap5	3297383	3297384	rs4151657	24837172	Juyal G	2014-05-16	Gut	Genome-wide association scan in north Indians reveals three novel HLA-independent risk loci for ulcerative colitis.	Ulcerative colitis	603 North Indian ancestry cases, 622 North Indian ancestry controls	733 North Indian ancestry cases, 1,148 North Indian ancestry controls	6p21.33	CFB, BAT2, MSH5, HSPA1L, SLC44A4	rs4151657-G	0.29	5E-14		1.54	[1.38-1.73]	Illumina [480391]	N
610	chr6_mcf_hap5	3298307	3298308	rs4151659	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	CFB	rs4151659-G	0.013	2E-18	(ER membrane protein complex subunit 4, EMC4.13516.46.3)	0.94	[0.72-1.16] unit decrease	Affymetrix [10572788] (imputed)	N
610	chr6_mcf_hap5	3298703	3298704	rs1270942	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	2,018 European ancestry cases, 6,925 European ancestry controls	6p21.33	MHC class III	rs1270942-C		2E-165		2.28	[2.15-2.42]	Illumina [644674]	N
610	chr6_mcf_hap5	3298703	3298704	rs1270942	25936594	Tomer Y	2015-04-27	J Autoimmun	Genome wide identification of new genes and pathways in patients with both autoimmune thyroiditis and type 1 diabetes.	Type 1 diabetes and autoimmune thyroid diseases	346 European ancestry cases, 727 European ancestry controls	185 European ancestry cases, 340 European ancestry controls	6p21.33	BAT2, HSPA1L, CFB, TNXB, NOTCH4	rs1270942-C	NR	5E-25		3.0494		Illumina [514008]	N
610	chr6_mcf_hap5	3298746	3298747	rs4151671	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		AL645922.1	rs4151671-?	NR	2E-8	(male)	2.99493	[NR] unit decrease	Affymetrix [NR] (imputed)	N
610	chr6_mcf_hap5	3298746	3298747	rs4151671	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA		NR	rs4151671-C	0.94890625	7E-10	(IFNAR1, 6055_53_3)	0.3487593	[0.24-0.46] unit increase	Illumina [> 1000000] (imputed)	N
610	chr6_mcf_hap5	3298746	3298747	rs4151671	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA		NR	rs4151671-C	0.94890625	6E-23	(FTMT, 8048_9_3)	0.5590734	[0.45-0.67] unit decrease	Illumina [> 1000000] (imputed)	N
610	chr6_mcf_hap5	3298746	3298747	rs4151671	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA		NR	rs4151671-C	0.94890625	2E-49	(ISG15, 14148_2_3)	0.84025466	[0.73-0.95] unit increase	Illumina [> 1000000] (imputed)	N
610	chr6_mcf_hap5	3298746	3298747	rs4151671	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA		NR	rs4151671-C	0.94890625	2E-23	(DEFB119, 13455_10_3)	0.5583053	[0.45-0.67] unit decrease	Illumina [> 1000000] (imputed)	N
610	chr6_mcf_hap5	3298746	3298747	rs4151671	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA		NR	rs4151671-C	0.94890625	2E-14	(MICA, 2730_58_2)	0.4376745	[0.33-0.55] unit increase	Illumina [> 1000000] (imputed)	N
610	chr6_mcf_hap5	3298746	3298747	rs4151671	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA		NR	rs4151671-C	0.94890625	2E-126	(TNXB, 5698_60_3)	1.3120593	[1.21-1.41] unit increase	Illumina [> 1000000] (imputed)	N
610	chr6_mcf_hap5	3298746	3298747	rs4151671	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA		NR	rs4151671-C	0.94890625	1E-9	(IL15, 10795_32_3)	0.34537017	[0.23-0.46] unit increase	Illumina [> 1000000] (imputed)	N
610	chr6_mcf_hap5	3298746	3298747	rs4151671	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA		NR	rs4151671-C	0.94890625	1E-66	(CFB, 4129_72_1)	0.96344995	[0.86-1.07] unit increase	Illumina [> 1000000] (imputed)	N
610	chr6_mcf_hap5	3298746	3298747	rs4151671	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA		NR	rs4151671-C	0.94890625	1E-41	(C2, 3186_2_2)	0.78192717	[0.67-0.89] unit increase	Illumina [> 1000000] (imputed)	N
610	chr6_mcf_hap5	3299421	3299422	rs2072633	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	CFB	rs2072633-A	NR	2E-10		0.0180815	[0.013-0.024] unit decrease	Affymetrix [321169] (imputed)	N
610	chr6_mcf_hap5	3299421	3299422	rs2072633	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	6p21.33	C2, CFB, MIR1236, NELFE, SKIV2L	rs2072633-A	0.443	6E-13		0.0411	[0.03-0.052] unit decrease	NR [8041861] (imputed)	N
610	chr6_mcf_hap5	3299673	3299674	rs4151672	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		CFB	rs4151672-?	NR	2E-8	(male)	2.99497	[NR] unit decrease	Affymetrix [NR] (imputed)	N
610	chr6_mcf_hap5	3299760	3299761	rs522162	23577725	Naj AC	2013-05-01	Ann Hum Genet	Genetic factors in nonsmokers with age-related macular degeneration revealed through genome-wide gene-environment interaction analysis.	Age-related macular degeneration (extreme sampling)	720 European ancestry grade 5 cases, 513 European ancestry grade 1 controls	70 European ancestry grade 5 cases, 73 European ancestry grade 1 controls	6p21.33	RDBP, CFB, DKFZp779M0311	rs522162-?	0.93	3E-7		2.38	[1.69-3.33]	Affymetrix [2543887] (imputed)	N
610	chr6_mcf_hap5	3299760	3299761	rs522162	23577725	Naj AC	2013-05-01	Ann Hum Genet	Genetic factors in nonsmokers with age-related macular degeneration revealed through genome-wide gene-environment interaction analysis.	Age-related macular degeneration	1,207 European ancestry cases, 686 European ancestry controls	122 European ancestry cases, 86 European ancestry controls	6p21.33	RDBP, CFB, ATF6B, STK19	rs522162-?	0.93	2E-10		2.33	[1.82-3.03]	Affymetrix [2543887] (imputed)	N
610	chr6_mcf_hap5	3300530	3300531	rs550513	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	SKIV2L, CFB, NELFE, C2, C2-AS1, XXbac-BPG116M5.17, MIR1236	rs550513-T	0.07981928	1E-19	(Complement factor B)	0.702	[0.55-0.85] unit increase	Affymetrix [509946]	N
610	chr6_mcf_hap5	3300909	3300910	rs4151665	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs4151665-C	0.06	7E-15	(Beta-defensin 119, DEFB119.13455.10.3)	0.4	[0.3-0.5] unit increase	Affymetrix [10572788] (imputed)	N
610	chr6_mcf_hap5	3301318	3301319	rs2072632	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SPAG11B	5,366 Icelandic ancestry individuals	NA	6p21.33		rs2072632-A	0.2866	3E-45		0.290078	[0.25-0.33] unit decrease	Illumina [7506463] (imputed)	N
610	chr6_mcf_hap5	3302097	3302098	rs630379	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	NELFE	rs630379-A	NR	1E-14		0.0231756	[0.017-0.029] unit decrease	Affymetrix [319769] (imputed)	N
610	chr6_mcf_hap5	3302097	3302098	rs630379	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	NELFE	rs630379-A	NR	2E-13		0.0221378	[0.016-0.028] unit decrease	Affymetrix [319769] (imputed)	N
610	chr6_mcf_hap5	3302097	3302098	rs630379	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	NELFE	rs630379-A	NR	2E-23		0.0325922	[0.026-0.039] unit increase	Affymetrix [323123] (imputed)	N
610	chr6_mcf_hap5	3302097	3302098	rs630379	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	NELFE	rs630379-A	NR	5E-17		0.0254771	[0.02-0.031] unit decrease	Affymetrix [321169] (imputed)	N
610	chr6_mcf_hap5	3303557	3303557	rs35917342	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs35917342-AT	0.101	1E-203	(Neutrophil collagenase, MMP8.2954.56.2)	1.18	[1.1-1.26] unit increase	Affymetrix [10572788] (imputed)	N
610	chr6_mcf_hap5	3304170	3304171	rs9501161	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs9501161-A	0.086	1E-11	(Complement factor B, CFB.4129.72.1)	0.29	[0.21-0.37] unit decrease	Affymetrix [10572788] (imputed)	N
610	chr6_mcf_hap5	3305691	3305692	rs80082277	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	6p21.33	SKIV2L, NELFE, MIR1236	rs80082277-C	0.02	3E-8	(EA)	0.0536	[0.035-0.073] unit decrease	Affymetrix, Illumina [10537485] (imputed)	N
610	chr6_mcf_hap5	3307185	3307186	rs440454	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	6p21.33		rs440454-?	NR	5E-9		0.0056767	[0.0038-0.0076] unit decrease	NR [NR]	N
610	chr6_mcf_hap5	3307185	3307186	rs440454	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p21.33	SKIV2L	rs440454-A	NR	2E-10		0.0210807	[0.015-0.028] unit decrease	Affymetrix [323858] (imputed)	N
610	chr6_mcf_hap5	3308534	3308535	rs2280774	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	CYP21A2, NELFE, DXO, TNXB, C2, C2-AS1, XXbac-BPG116M5.17, CFB, MIR1236, SKIV2L, STK19, C4A, C4B, C4B-AS1, RNA5SP206	rs2280774-A	0.3705942	8E-29	(Complement C4b)	0.5048	[0.42-0.59] unit decrease	Affymetrix [509946]	N
610	chr6_mcf_hap5	3308534	3308535	rs2280774	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	CYP21A2, NELFE, DXO, TNXB, C2, C2-AS1, XXbac-BPG116M5.17, CFB, MIR1236, SKIV2L, STK19, C4A, C4B, C4B-AS1, RNA5SP206	rs2280774-A	0.3705942	8E-12	(EA, gp41 C34 peptide, HIV)	0.3064	[0.22-0.39] unit decrease	Affymetrix [509946]	N
610	chr6_mcf_hap5	3308642	3308643	rs419788	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	SKIV2L	rs419788-T	NR	3E-19		0.0298384	[0.023-0.036] unit decrease	Affymetrix [323858] (imputed)	N
610	chr6_mcf_hap5	3308642	3308643	rs419788	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	SKIV2L	rs419788-T	NR	1E-16		0.0274934	[0.021-0.034] unit decrease	Affymetrix [127266] (imputed)	N
610	chr6_mcf_hap5	3309651	3309652	rs35664695	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p21.33	NR	rs35664695-?	NR	6E-17		0.1764	[0.14-0.22] unit increase	Illumina [at least 560000] (imputed)	N
610	chr6_mcf_hap5	3310194	3310195	rs2734331	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	6p21.33	SKIV2L	rs2734331-A	0.97	7E-13	(X-11470)	0.073	[0.053-0.093] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
610	chr6_mcf_hap5	3310284	3310285	rs592229	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	6p21.33		rs592229-G	0.486	2E-28		0.12	[0.1-0.14] % increase	Affymetrix [NR] (imputed)	N
610	chr6_mcf_hap5	3310284	3310285	rs592229	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	SKIV2L	rs592229-G	NR	3E-9		0.0166622	[0.011-0.022] unit decrease	Affymetrix [319769] (imputed)	N
610	chr6_mcf_hap5	3310284	3310285	rs592229	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	SKIV2L	rs592229-G	NR	6E-18		0.0269889	[0.021-0.033] unit decrease	Affymetrix [323858] (imputed)	N
610	chr6_mcf_hap5	3310284	3310285	rs592229	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	SKIV2L	rs592229-G	NR	2E-8		0.0157493	[0.01-0.021] unit decrease	Affymetrix [319769] (imputed)	N
610	chr6_mcf_hap5	3310284	3310285	rs592229	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	SKIV2L	rs592229-G	NR	1E-15		0.0250227	[0.019-0.031] unit decrease	Affymetrix [127266] (imputed)	N
610	chr6_mcf_hap5	3310284	3310285	rs592229	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	SKIV2L	rs592229-G	NR	5E-15		0.023966	[0.018-0.03] unit increase	Affymetrix [323123] (imputed)	N
610	chr6_mcf_hap5	3310284	3310285	rs592229	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p21.33	SKIV2L	rs592229-G	NR	5E-12		0.0214232	[0.015-0.027] unit decrease	Affymetrix [323858] (imputed)	N
610	chr6_mcf_hap5	3310284	3310285	rs592229	25281659	van der Valk RJ	2014-10-03	Hum Mol Genet	A novel common variant in DCST2 is associated with length in early life and height in adulthood.	Infant length	28,238 European ancestry individuals	NA	6p21.33	HLA	rs592229-G	0.43	2E-8		0.048	[0.030-0.066] unit increase	Affymetrix, Illumina [2193675] (imputed)	N
610	chr6_mcf_hap5	3310284	3310285	rs592229	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs592229-G	0.370399655280899	4E-6	(IGP42)	0.1536	[0.088-0.219] unit increase	Illumina [~ 2500000] (imputed)	N
610	chr6_mcf_hap5	3310284	3310285	rs592229	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs592229-G	0.370283129554656	9E-6	(IGP2)	0.1479	[0.083-0.213] unit increase	Illumina [~ 2500000] (imputed)	N
610	chr6_mcf_hap5	3310305	3310306	rs429608	23455636	Fritsche LG	2013-03-03	Nat Genet	Seven new loci associated with age-related macular degeneration.	Age-related macular degeneration	6,713 European ancestry cases, 48,402 European ancestry contols, 110 Southern Indian ancestry cases, 119 Southern Indian ancestry controls, 827 Japanese ancestry cases, 3,323 Japanese ancestry controls	9,070 European ancestry cases, 7,683 European ancestry contols, 461 East Asian ancestry cases, 547 East Asian ancestry controls	6p21.33	CFB, C2	rs429608-G	0.86	4E-89		1.74	[1.68-1.79]	Affymetrix, Illumina [2442884] (imputed)	N
610	chr6_mcf_hap5	3310305	3310306	rs429608	20861866	Kopplin LJ	2010-09-23	Genes Immun	Genome-wide association identifies SKIV2L and MYRIP as protective factors for age-related macular degeneration.	Age-related macular degeneration	684 European ancestry cases, 188 European ancestry controls	1,896 European ancestry cases, 1,866 European ancestry controls	6p21.33	BF, SKIV2L	rs429608-?	NR	5E-15		1.85	[NR]	Affymetrix [> 361556] (imputed)	N
610	chr6_mcf_hap5	3310305	3310306	rs429608	20385819	Chen W	2010-04-12	Proc Natl Acad Sci U S A	Genetic variants near TIMP3 and high-density lipoprotein-associated loci influence susceptibility to age-related macular degeneration.	Age-related macular degeneration	2,157 European ancestry cases, 1,150 European ancestry controls	7,892 European ancestry cases, 5,998 European ancestry controls, 678 Japanese ancestry cases, 336 Japanese ancestry controls	6p21.33	CFB, C2	rs429608-G	0.842	3E-21		2.16	[1.84-2.53]	Illumina [~ 2500000] (imputed)	N
610	chr6_mcf_hap5	3310980	3310981	rs401775	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p21.33	NR	rs401775-?	NR	3E-12		0.1102	[0.079-0.141] unit increase	Illumina [at least 560000] (imputed)	N
610	chr6_mcf_hap5	3313004	3313005	rs406936	23577725	Naj AC	2013-05-01	Ann Hum Genet	Genetic factors in nonsmokers with age-related macular degeneration revealed through genome-wide gene-environment interaction analysis.	Age-related macular degeneration	1,207 European ancestry cases, 686 European ancestry controls	122 European ancestry cases, 86 European ancestry controls	6p21.33	SKIV2L	rs406936-?	0.10	7E-7		1.75	[1.41-2.17]	Affymetrix [2543887] (imputed)	N
610	chr6_mcf_hap5	3313361	3313362	rs492899	31241743	Jaeger M	2019-04-24	J Infect Dis	A Genome-Wide Functional Genomics Approach Identifies Susceptibility Pathways to Fungal Bloodstream Infection in Humans.	Candidemia	161 European ancestry cases, 152 European ancestry controls	NA	6p21.33	NR	rs492899-?	NR	2E-6		5.5555553	[NR]	Illumina [5326313] (imputed)	N
610	chr6_mcf_hap5	3313361	3313362	rs492899	30854688	Wang C	2019-03-10	Hepatology	Genome Wide Association Studies of Specific Antinuclear Autoantibody Sub-phenotypes in Primary Biliary Cholangitis.	Anti-sp100 seropositivity in primary biliary cholangitis	211 Han Chinese ancestry cases, 711 Han Chinese ancestry controls	234 Han Chinese ancestry cases, 1,018 Han Chinese ancestry controls	6p21.33	NR	rs492899-G	0.193	3E-22		2.9	[2.34-3.66]	Illumina [794531]	N
610	chr6_mcf_hap5	3313820	3313821	rs9296004	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TYK2	5,361 Icelandic ancestry individuals	NA	6p21.33		rs9296004-C	0.09963	6E-11		0.203156	[0.14-0.26] unit increase	Illumina [7506463] (imputed)	N
610	chr6_mcf_hap5	3313820	3313821	rs9296004	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LDLRAD4	5,362 Icelandic ancestry individuals	NA	6p21.33		rs9296004-C	0.09963	7E-11		0.200339	[0.14-0.26] unit increase	Illumina [7506463] (imputed)	N
610	chr6_mcf_hap5	3313820	3313821	rs9296004	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ISG15	5,349 Icelandic ancestry individuals	NA	6p21.33		rs9296004-C	0.09963	8E-62		0.488305	[0.43-0.55] unit decrease	Illumina [7506463] (imputed)	N
610	chr6_mcf_hap5	3313820	3313821	rs9296004	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL18RAP	5,360 Icelandic ancestry individuals	NA	6p21.33		rs9296004-C	0.09963	6E-30		0.350014	[0.29-0.41] unit decrease	Illumina [7506463] (imputed)	N
610	chr6_mcf_hap5	3313820	3313821	rs9296004	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FTMT	5,365 Icelandic ancestry individuals	NA	6p21.33		rs9296004-C	0.09963	4E-81		0.580682	[0.52-0.64] unit increase	Illumina [7506463] (imputed)	N
610	chr6_mcf_hap5	3313820	3313821	rs9296004	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DEFB119	5,366 Icelandic ancestry individuals	NA	6p21.33		rs9296004-C	0.09963	3E-94		0.623132	[0.56-0.68] unit increase	Illumina [7506463] (imputed)	N
610	chr6_mcf_hap5	3313820	3313821	rs9296004	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C4A;C4B	5,353 Icelandic ancestry individuals	NA	6p21.33		rs9296004-C	0.09963	1E-39		0.393378	[0.33-0.45] unit increase	Illumina [7506463] (imputed)	N
610	chr6_mcf_hap5	3313820	3313821	rs9296004	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	SKIV2L	rs9296004-C	0.082	3E-40	(Beta-defensin 119, DEFB119.13455.10.3)	0.61	[0.51-0.71] unit increase	Affymetrix [10572788] (imputed)	N
610	chr6_mcf_hap5	3315410	3315411	rs3911893	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DEFB119	5,366 Icelandic ancestry individuals	NA	6p21.33		rs3911893-A	0.0572	2E-35		0.507255	[0.43-0.59] unit increase	Illumina [7506463] (imputed)	N
610	chr6_mcf_hap5	3315593	3315594	rs106287	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	6p21.33	SKIV2L	rs106287-A	0.0424830000000001	8E-12		0.03863092	[0.028-0.05] unit decrease	Affymetrix [93095623] (imputed)	N
610	chr6_mcf_hap5	3315900	3315901	rs34241101	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6p21.33	NR	rs34241101-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
610	chr6_mcf_hap5	3315900	3315901	rs34241101	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Strep throat	52,487 European ancestry cases, 22,017 European ancestry controls	NA	6p21.33	NR	rs34241101-?	NR	2E-7		0.0548	[0.034-0.076] unit increase	Illumina [at least 560000] (imputed)	N
610	chr6_mcf_hap5	3316511	3316512	rs410851	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	6p21.33		rs410851-C	NR	1E-16		0.0169	[0.013-0.021] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
610	chr6_mcf_hap5	3316511	3316512	rs410851	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	6p21.33		rs410851-C	NR	3E-21		0.02	[0.016-0.024] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
610	chr6_mcf_hap5	3316511	3316512	rs410851	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	SKIV2L	rs410851-T	NR	5E-12		0.0206765	[0.015-0.027] unit increase	Affymetrix [321016] (imputed)	N
610	chr6_mcf_hap5	3317963	3317964	rs45531831	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	TNXB	rs45531831-T	0.023	3E-116	(Tenascin-X, TNXB.5698.60.3)	1.75	[1.59-1.91] unit decrease	Affymetrix [10572788] (imputed)	N
610	chr6_mcf_hap5	3319188	3319189	rs41267118	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL18RAP	5,360 Icelandic ancestry individuals	NA	6p21.33		rs41267118-A	0.04712	9E-9		0.259513	[0.17-0.35] unit decrease	Illumina [7506463] (imputed)	N
610	chr6_mcf_hap5	3319367	3319368	rs115085021	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CFB	5,365 Icelandic ancestry individuals	NA	6p21.33		rs115085021-C	0.03863	6E-25		0.502999	[0.41-0.6] unit increase	Illumina [7506463] (imputed)	N
610	chr6_mcf_hap5	3320061	3320062	rs75393409	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs75393409-?		2E-7		1.06	[1.04-1.09]	Illumina [7645193] (imputed)	N
610	chr6_mcf_hap5	3320061	3320062	rs75393409	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs75393409-?		4E-8		1.78	[1.45-2.18]	Illumina [7645193] (imputed)	N
610	chr6_mcf_hap5	3320740	3320741	rs389884	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FTMT	5,365 Icelandic ancestry individuals	NA	6p21.33		rs389884-G	0.08177	6E-137		0.828667	[0.76-0.89] unit decrease	Illumina [7506463] (imputed)	N
610	chr6_mcf_hap5	3320740	3320741	rs389884	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p21.33	STK19	rs389884-G	0.342	1E-32				Illumina [118177]	N
610	chr6_mcf_hap5	3320740	3320741	rs389884	23263863	Li J	2012-12-20	Hum Mol Genet	GWAS of blood cell traits identifies novel associated loci and epistatic interactions in Caucasian and African-American children.	Hematology traits	7,943 African American children, 6,234 European ancestry children	NA	6p21.33	CFB, STK19, ZBTB12	rs389884-C	0.0953	2E-8	(EA, WBC)	0.0254	[0.017-0.034] unit decrease	Illumina [544917]	N
610	chr6_mcf_hap5	3320740	3320741	rs389884	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.33	intergenic	rs389884-C	0.1148	8E-66		3.65	[NR]	Illumina [242824]	N
610	chr6_mcf_hap5	3321400	3321401	rs387608	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SIGLEC8	5,359 Icelandic ancestry individuals	NA	6p21.33		rs387608-A	0.1429	6E-12		0.181754	[0.13-0.23] unit increase	Illumina [7506463] (imputed)	N
610	chr6_mcf_hap5	3321400	3321401	rs387608	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PCDHGB4	5,352 Icelandic ancestry individuals	NA	6p21.33		rs387608-A	0.1429	2E-12		0.184372	[0.13-0.24] unit increase	Illumina [7506463] (imputed)	N
610	chr6_mcf_hap5	3321400	3321401	rs387608	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein OSM	5,348 Icelandic ancestry individuals	NA	6p21.33		rs387608-A	0.1429	4E-12		0.174055	[0.12-0.22] unit increase	Illumina [7506463] (imputed)	N
610	chr6_mcf_hap5	3321400	3321401	rs387608	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DES	5,344 Icelandic ancestry individuals	NA	6p21.33		rs387608-A	0.1429	5E-14		0.190553	[0.14-0.24] unit increase	Illumina [7506463] (imputed)	N
610	chr6_mcf_hap5	3321400	3321401	rs387608	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CFP	5,352 Icelandic ancestry individuals	NA	6p21.33		rs387608-A	0.1429	1E-15		0.207744	[0.16-0.26] unit decrease	Illumina [7506463] (imputed)	N
610	chr6_mcf_hap5	3321400	3321401	rs387608	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	SKIV2L, C4B, TNXB, DXO, STK19, C4A, C4A-AS1, CYP21A1P, TNXA, AL645922.1, STK19B, CYP21A2, C4B-AS1	rs387608-A	0.1214859	3E-25	(gp41 C34 peptide, HIV)	0.6703	[0.55-0.79] unit increase	Affymetrix [509946]	N
610	chr6_mcf_hap5	3321472	3321473	rs116420479	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	6p21.33	HLA region	rs116420479-?	NR	3E-8	(EA)			Affymetrix, Illumina [10537485] (imputed)	N
610	chr6_mcf_hap5	3321472	3321473	rs116420479	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	6p21.33	HLA region	rs116420479-?	NR	1E-8				Affymetrix, Illumina [10537485] (imputed)	N
610	chr6_mcf_hap5	3323076	3323077	rs41315812	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein USP25	5,360 Icelandic ancestry individuals	NA	6p21.33		rs41315812-T	0.0381	4E-157		1.22583	[1.14-1.32] unit increase	Illumina [7506463] (imputed)	N
610	chr6_mcf_hap5	3323880	3323881	rs1738434	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.33		rs1738434-G	0.595	1E-62				Affymetrix [10369434] (imputed)	N
610	chr6_mcf_hap5	3323880	3323881	rs1738434	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	STK19	rs1738434-T	NR	7E-11		0.0207324	[0.014-0.027] unit increase	Affymetrix [323858] (imputed)	N
610	chr6_mcf_hap5	3323880	3323881	rs1738434	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	STK19	rs1738434-T	NR	3E-9		0.0189414	[0.013-0.025] unit increase	Affymetrix [127266] (imputed)	N
610	chr6_mcf_hap5	3323880	3323881	rs1738434	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	STK19	rs1738434-T	NR	2E-10		0.0197638	[0.014-0.026] unit decrease	Affymetrix [323123] (imputed)	N
610	chr6_mcf_hap5	3323880	3323881	rs1738434	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p21.33	STK19	rs1738434-T	NR	4E-9		0.0185989	[0.012-0.025] unit increase	Affymetrix [323858] (imputed)	N
610	chr6_mcf_hap5	3323880	3323881	rs1738434	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	STK19	rs1738434-T	0.412	4E-34	(Trypsin-3, PRSS3.3479.71.2)	0.3	[0.26-0.34] unit decrease	Affymetrix [10572788] (imputed)	N
610	chr6_mcf_hap5	3325074	3325075	rs12524149	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs12524149-C	0.677	9E-49				Affymetrix [10369434] (imputed)	N
610	chr6_mcf_hap5	3325490	3325491	rs2734325	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	6p21.33	STK19	rs2734325-T	NR	3E-7	(EA)	1.0615711	[1.04-1.08]	Illumina [6627481] (imputed)	N
610	chr6_mcf_hap5	3326458	3326459	rs6941112	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	STK19	rs6941112-A	NR	3E-9		0.019993	[0.013-0.027] unit decrease	Affymetrix [323123] (imputed)	N
610	chr6_mcf_hap5	3326458	3326459	rs6941112	34011352	Schwarm C	2021-05-19	Orphanet J Rare Dis	Identification of two novel bullous pemphigoid- associated alleles, HLA-DQA1*05:05 and -DRB1*07:01, in Germans.	Bullous pemphigoid	438 German cases, 417 German controls	NA	6p21.33	STK19	rs6941112-?	NR	7E-6		0.498031	[0.28-0.71] unit increase	Affymetrix [up to 386296] (imputed)	N
610	chr6_mcf_hap5	3326458	3326459	rs6941112	31972866	Nagel M	2020-01-23	Acta Psychiatr Scand	Genome-wide association study of the sensitivity to environmental stress and adversity (SESA) neuroticism cluster.	Sensitivity to environmental stress and adversity	351,827 European ancestry individuals	NA	6p21.33	NR	rs6941112-A	NR	6E-12		0.01765	NR unit increase	NR [7259579]	N
610	chr6_mcf_hap5	3326818	3326819	rs77143442	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs77143442-C	0.023	3E-27	(Interleukin-21, IL21.7124.18.3)	0.9	[0.74-1.06] unit decrease	Affymetrix [10572788] (imputed)	N
610	chr6_mcf_hap5	3326871	3326872	rs181705462	26691988	Fritsche LG	2015-12-21	Nat Genet	A large genome-wide association study of age-related macular degeneration highlights contributions of rare and common variants.	Advanced age-related macular degeneration	16,144 European ancestry cases, 17,832 European ancestry controls	473 Asian ancestry cases, 1,099 Asian ancestry controls, 52 African ancestry cases, 361 African ancestry cases, 254 other non-European ancestry cases, 694 other non-European ancestry controls	6p21.33	C2, CFB, SKIV2L	rs181705462-?	NR	3E-10	(EA)	1.55		Illumina [12023830] (imputed)	N
610	chr6_mcf_hap5	3327304	3327305	rs389883	30626913	Amare AT	2019-01-09	Mol Psychiatry	Bivariate genome-wide association analyses of the broad depression phenotype combined with major depressive disorder, bipolar disorder or schizophrenia reveal eight novel genetic loci for depression.	Broad depression or schizophrenia	9,240 European ancestry broad depression cases, 9,519 European ancestry broad depression controls, 51,258 European ancestry individuals, 36,989 European and East Asian ancestry schizophrenia cases, 113,075 European and East Asian ancestry schizophrenia controls	322,580 individuals	6p21.33	STK19	rs389883-T	0.68	1E-12				Affymetrix, Illumina [at least 918921] (imputed)	N
610	chr6_mcf_hap5	3327761	3327762	rs114632474	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		STK19	rs114632474-?	NR	3E-10		1.8011	[NR] unit decrease	Affymetrix [NR] (imputed)	N
610	chr6_mcf_hap5	3360989	3360990	rs4959021	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	6p21.33	Intergenic	rs4959021-T	NR	2E-6		0.0232941	[0.014-0.033] unit increase	Illumina [13519193] (imputed)	N
610	chr6_mcf_hap5	3360989	3360990	rs4959021	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.33	Intergenic	rs4959021-T	NR	5E-7	(women)	0.0322206	[0.02-0.045] unit increase	Illumina [13520550] (imputed)	N
610	chr6_mcf_hap5	3360989	3360990	rs4959021	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.33	Intergenic	rs4959021-T	NR	2E-9		0.0268709	[0.018-0.036] unit increase	Illumina [13520550] (imputed)	N
610	chr6_mcf_hap5	3360989	3360990	rs4959021	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	6p21.33	Intergenic	rs4959021-T	NR	3E-19		0.0468195	[0.037-0.057] unit increase	Illumina [13520550] (imputed)	N
610	chr6_mcf_hap5	3374566	3374567	rs200283861	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.33	NR	rs200283861-A	0.277	3E-23		1.203	[1.17-1.24]	Illumina [11270530] (imputed)	N
610	chr6_mcf_hap5	3374625	3374626	rs451637	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs451637-T	0.308	2E-22	(Beta-defensin 119, DEFB119.13455.10.3)	0.28	[0.22-0.34] unit decrease	Affymetrix [10572788] (imputed)	N
610	chr6_mcf_hap5	3376367	3376368	rs406658	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LDLRAD4	5,362 Icelandic ancestry individuals	NA	6p21.33		rs406658-A	0.1189	3E-18		0.250928	[0.19-0.31] unit increase	Illumina [7506463] (imputed)	N
610	chr6_mcf_hap5	3376367	3376368	rs406658	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HNF4A	5,363 Icelandic ancestry individuals	NA	6p21.33		rs406658-A	0.1189	5E-14		0.217282	[0.16-0.27] unit increase	Illumina [7506463] (imputed)	N
610	chr6_mcf_hap5	3376367	3376368	rs406658	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6p21.33	C4B	rs406658-A	0.110604	2E-10		0.024302784	[0.017-0.032] unit increase	Affymetrix [93095623] (imputed)	N
610	chr6_mcf_hap5	3376367	3376368	rs406658	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	C4A, C4B	rs406658-A	0.119	3E-52	(Complement C4, C4A.C4B.4481.34.2)	0.56	[0.48-0.64] unit increase	Affymetrix [10572788] (imputed)	N
610	chr6_mcf_hap5	3385111	3385112	rs431204	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p21.33	NR	rs431204-?	NR	1E-6		4.868	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
610	chr6_mcf_hap5	3385148	3385149	rs4713496	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.33		rs4713496-A	0.981	1E-36				Affymetrix [10369434] (imputed)	N
610	chr6_mcf_hap5	3385148	3385149	rs4713496	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs4713496-A	0.981	3E-36				Affymetrix [10369434] (imputed)	N
610	chr6_mcf_hap5	3385199	3385200	rs113720465	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.33	NR	rs113720465-A	0.052	6E-30	(conditional)	0.447	[0.31-0.59]	Illumina [11270530] (imputed)	N
610	chr6_mcf_hap5	3385493	3385494	rs396458	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein UBC	5,349 Icelandic ancestry individuals	NA	6p21.33		rs396458-G	0.1452	4E-20		0.229839	[0.18-0.28] unit increase	Illumina [7506463] (imputed)	N
610	chr6_mcf_hap5	3385493	3385494	rs396458	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TRIL	5,360 Icelandic ancestry individuals	NA	6p21.33		rs396458-G	0.1452	7E-12		0.183406	[0.13-0.24] unit increase	Illumina [7506463] (imputed)	N
610	chr6_mcf_hap5	3385493	3385494	rs396458	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LAYN	5,339 Icelandic ancestry individuals	NA	6p21.33		rs396458-G	0.1452	3E-15		0.189442	[0.14-0.24] unit increase	Illumina [7506463] (imputed)	N
610	chr6_mcf_hap5	3385493	3385494	rs396458	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL34	5,345 Icelandic ancestry individuals	NA	6p21.33		rs396458-G	0.1452	4E-20		0.227625	[0.18-0.28] unit increase	Illumina [7506463] (imputed)	N
610	chr6_mcf_hap5	3385493	3385494	rs396458	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GCNT4	5,342 Icelandic ancestry individuals	NA	6p21.33		rs396458-G	0.1452	3E-12		0.175139	[0.13-0.22] unit increase	Illumina [7506463] (imputed)	N
610	chr6_mcf_hap5	3386438	3386439	rs6462	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	CYP21A2	rs6462-C	NR	2E-9		0.0206131	[0.014-0.027] unit increase	Affymetrix [323123] (imputed)	N
610	chr6_mcf_hap5	3386726	3386727	rs6474	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	CYP21A2	rs6474-A	NR	4E-9		0.0198676	[0.013-0.026] unit increase	Affymetrix [323858] (imputed)	N
610	chr6_mcf_hap5	3386736	3386737	rs6455	26385043	Kertai MD	2015-06-17	Am Heart J	Genome-wide association study of new-onset atrial fibrillation after coronary artery bypass grafting surgery.	Postoperative atrial fibrillation in coronary artery bypass grafting surgery	620 European ancestry cases, 257 European ancestry controls	220 cases, 84 controls	6p21.33	CYP21A2	rs6455-G	0.015	3E-6		1.96	[0.51-7.58]	Illumina [524975]	N
610	chr6_mcf_hap5	3386903	3386904	rs6466	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Scarlet fever	6,812 European ancestry cases, 113,837 European ancestry controls	NA	6p21.33	NR	rs6466-?	NR	3E-6		0.0939	[0.055-0.133] unit increase	Illumina [at least 560000] (imputed)	N
610	chr6_mcf_hap5	3387464	3387465	rs6458	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TMEM52B	5,359 Icelandic ancestry individuals	NA	6p21.33		rs6458-G	0.119	2E-13		0.212277	[0.16-0.27] unit increase	Illumina [7506463] (imputed)	N
610	chr6_mcf_hap5	3387464	3387465	rs6458	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ISG15	5,349 Icelandic ancestry individuals	NA	6p21.33		rs6458-G	0.119	8E-28		0.307651	[0.25-0.36] unit decrease	Illumina [7506463] (imputed)	N
610	chr6_mcf_hap5	3387464	3387465	rs6458	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ERP29	5,363 Icelandic ancestry individuals	NA	6p21.33		rs6458-G	0.119	1E-12		0.209088	[0.15-0.27] unit increase	Illumina [7506463] (imputed)	N
610	chr6_mcf_hap5	3387464	3387465	rs6458	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CMPK1	5,365 Icelandic ancestry individuals	NA	6p21.33		rs6458-G	0.119	6E-14		0.220731	[0.16-0.28] unit increase	Illumina [7506463] (imputed)	N
610	chr6_mcf_hap5	3387464	3387465	rs6458	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C4A;C4B	5,362 Icelandic ancestry individuals	NA	6p21.33		rs6458-G	0.119	8E-56		0.450845	[0.39-0.51] unit increase	Illumina [7506463] (imputed)	N
610	chr6_mcf_hap5	3387465	3387466	rs6459	33941608	Khan A	2021-05-03	J Am Soc Nephrol	Medical Records-Based Genetic Studies of the Complement System.	Complement C4 levels	3,247 European ancestry individuals, 600 African ancestry individuals, 151 East Asian ancestry individuals	NA	6p21.33	C4	rs6459-T	0.12	8E-29		0.38	[0.32-0.43] unit increase	NR [NR] (imputed)	N
610	chr6_mcf_hap5	3387465	3387466	rs6459	33941608	Khan A	2021-05-03	J Am Soc Nephrol	Medical Records-Based Genetic Studies of the Complement System.	Complement C4 levels	3,247 European ancestry individuals, 600 African ancestry individuals, 151 East Asian ancestry individuals	NA	6p21.33	C4	rs6459-T	0.1	8E-30	(EA)	0.45	[0.39-0.50] unit increase	NR [NR] (imputed)	N
610	chr6_mcf_hap5	3388764	3388765	rs6447	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C4A;C4B	5,353 Icelandic ancestry individuals	NA	6p21.33		rs6447-A	0.01467	1E-18		0.67965	[0.53-0.83] unit decrease	Illumina [7506463] (imputed)	N
610	chr6_mcf_hap5	3389119	3389120	rs415620	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.33		rs415620-T	0.943	2E-17				Affymetrix [10369434] (imputed)	N
610	chr6_mcf_hap5	3389141	3389142	rs7774739	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.33	NR	rs7774739-A	0.993	1E-10	(conditional)	0.483	[0.26-0.7]	Illumina [11270530] (imputed)	N
610	chr6_mcf_hap5	3389215	3389216	rs7756934	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6p21.33	TNXB	rs7756934-?	NR	9E-6	(TAG 58:9)	0.2544521	[0.14-0.37] unit increase	Affymetrix [at least 2500000] (imputed)	N
610	chr6_mcf_hap5	3390572	3390573	rs1135809	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	TNXB	rs1135809-G	NR	1E-11		0.0213697	[0.015-0.028] unit decrease	Affymetrix [323123] (imputed)	N
610	chr6_mcf_hap5	3391044	3391045	rs2734313	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	TNXB	rs2734313-C	NR	9E-10		0.0195186	[0.013-0.026] unit increase	Affymetrix [323858] (imputed)	N
610	chr6_mcf_hap5	3391044	3391045	rs2734313	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	TNXB	rs2734313-C	NR	3E-8		0.0176763	[0.011-0.024] unit increase	Affymetrix [127266] (imputed)	N
610	chr6_mcf_hap5	3391044	3391045	rs2734313	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	TNXB	rs2734313-C	NR	5E-9		0.0169883	[0.011-0.023] unit increase	Affymetrix [321169] (imputed)	N
610	chr6_mcf_hap5	3391198	3391199	rs2856451	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	TNXB	rs2856451-A	NR	8E-12		0.0193125	[0.014-0.025] unit decrease	Affymetrix [319769] (imputed)	N
610	chr6_mcf_hap5	3391198	3391199	rs2856451	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	TNXB	rs2856451-A	NR	2E-13		0.0230817	[0.017-0.029] unit decrease	Affymetrix [323858] (imputed)	N
610	chr6_mcf_hap5	3391198	3391199	rs2856451	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	TNXB	rs2856451-A	NR	6E-11		0.0185015	[0.013-0.024] unit decrease	Affymetrix [319769] (imputed)	N
610	chr6_mcf_hap5	3391198	3391199	rs2856451	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	TNXB	rs2856451-A	NR	2E-11		0.0210983	[0.015-0.027] unit decrease	Affymetrix [127266] (imputed)	N
610	chr6_mcf_hap5	3391198	3391199	rs2856451	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	TNXB	rs2856451-A	NR	2E-15		0.0227758	[0.017-0.028] unit decrease	Affymetrix [321169] (imputed)	N
610	chr6_mcf_hap5	3391198	3391199	rs2856451	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p21.33	TNXB	rs2856451-G	0.518309	2E-11		0.017992081	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
610	chr6_mcf_hap5	3391198	3391199	rs2856451	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	6p21.33	TNXB	rs2856451-G	0.518312	6E-11		0.017482799	[0.012-0.023] unit increase	Affymetrix [93095623] (imputed)	N
610	chr6_mcf_hap5	3391198	3391199	rs2856451	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	6p21.33	NR	rs2856451-G	0.519311	4E-14		0.0506538	[0.037-0.064] unit decrease	Affymetrix [17914406] (imputed)	N
610	chr6_mcf_hap5	3391198	3391199	rs2856451	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	White blood cell count	8,825 African American individuals, 18,251 Hispanic/Latino individuals, 543 Asian ancestry individuals, 606 Native American ancestry individuals, 383 individuals	NA	6p21.33	NR	rs2856451-?	NR	7E-6		0.01116211	[0.0063-0.016] unit increase	Illumina [30613845] (imputed)	N
610	chr6_mcf_hap5	3391198	3391199	rs2856451	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	6p21.33	TNXB	rs2856451-G	0.5174	3E-95		0.07491311	[0.068-0.082] unit increase	Affymetrix [~ 2500000] (imputed)	N
610	chr6_mcf_hap5	3391198	3391199	rs2856451	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	6p21.33	TNXB	rs2856451-G	0.5175	5E-57		0.05732686	[0.05-0.064] unit increase	Affymetrix [~ 2500000] (imputed)	N
610	chr6_mcf_hap5	3391198	3391199	rs2856451	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	6p21.33	TNXB	rs2856451-G	0.5175	8E-50		0.05341342	[0.046-0.06] unit increase	Affymetrix [~ 2500000] (imputed)	N
610	chr6_mcf_hap5	3394296	3394297	rs34214527	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	6p21.33	Intergenic	rs34214527-C	0.9156	4E-10		0.0256	[0.018-0.034] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
610	chr6_mcf_hap5	3394415	3394416	rs2856448	35264221	Caron B	2022-03-09	Genome Med	Integrative genetic and immune cell analysis of plasma proteins in healthy donors identifies novel associations involving primary immune deficiency genes.	TN X plasma levels	400 French ancestry individuals	NA	6p21.33		rs2856448-G	NR	1E-38		0.685	[0.64-0.73] ng/mL increase	Illumina [5201092] (imputed)	N
610	chr6_mcf_hap5	3394668	3394669	rs433061	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	6p21.33	NR	rs433061-A	0.111550236715686	4E-17		0.012269953	[0.0094-0.0151] unit decrease	NR [NR]	N
610	chr6_mcf_hap5	3394668	3394669	rs433061	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	6p21.33	NR	rs433061-?	NR	8E-6		0.0786	[0.044-0.113] unit decrease	Illumina [at least 560000] (imputed)	N
610	chr6_mcf_hap5	3397447	3397448	rs146280229	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.33	NR	rs146280229-C	0.007	1E-11	(conditional)	1.815	[1.64-1.99]	Illumina [11270530] (imputed)	N
610	chr6_mcf_hap5	3399222	3399223	rs115521560	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL18RAP	5,360 Icelandic ancestry individuals	NA	6p21.33		rs115521560-C	0.07408	4E-6		0.168353	[0.097-0.24] unit decrease	Illumina [7506463] (imputed)	N
610	chr6_mcf_hap5	3399222	3399223	rs115521560	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C4A;C4B	5,353 Icelandic ancestry individuals	NA	6p21.33		rs115521560-C	0.07408	6E-20		0.322359	[0.25-0.39] unit decrease	Illumina [7506463] (imputed)	N
610	chr6_mcf_hap5	3399352	3399353	rs41316748	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	6p21.33	NR	rs41316748-C	0.0430592148955273	1E-8		0.012935713	[0.0085-0.0174] unit increase	NR [NR]	N
610	chr6_mcf_hap5	3399352	3399353	rs41316748	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	6p21.33	NR	rs41316748-C	0.0430592148955273	2E-8		0.021394862	[0.014-0.029] unit increase	NR [NR]	N
610	chr6_mcf_hap5	3399352	3399353	rs41316748	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	6p21.33	NR	rs41316748-C	0.0430592148955273	2E-8		0.0137647055	[0.0089-0.0186] unit increase	NR [NR]	N
610	chr6_mcf_hap5	3399352	3399353	rs41316748	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	TNXB	rs41316748-C	0.042	2E-114	(Ubiquitin carboxyl-terminal hydrolase 25, USP25.9215.117.3)	1.31	[1.19-1.43] unit increase	Affymetrix [10572788] (imputed)	N
610	chr6_mcf_hap5	3399352	3399353	rs41316748	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p21.33	TNXB	rs41316748-C	0.04	1E-12		1.19	[1.15-1.23]	Illumina [at least 560000] (imputed)	N
610	chr6_mcf_hap5	3399586	3399587	rs2857009	23028341	Yang X	2012-09-13	PLoS Genet	Genome-wide association study for serum complement C3 and C4 levels in healthy Chinese subjects.	Complement C3 and C4 levels	1,999 Han Chinese ancestry male individuals	1,496 Han Chinese ancestry male individuals	6p21.33	C4	rs2857009-G	0.20	1E-22	(Serum level of C4)	0.08	[0.060-0.100] g/L increase	Illumina [1940245] (imputed)	N
610	chr6_mcf_hap5	3400801	3400802	rs34562262	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RACGAP1	5,360 Icelandic ancestry individuals	NA	6p21.33		rs34562262-C	0.04252	7E-83		0.878733	[0.79-0.97] unit decrease	Illumina [7506463] (imputed)	N
610	chr6_mcf_hap5	3400801	3400802	rs34562262	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL18RAP	5,360 Icelandic ancestry individuals	NA	6p21.33		rs34562262-C	0.04252	3E-89		0.913858	[0.82-1] unit decrease	Illumina [7506463] (imputed)	N
610	chr6_mcf_hap5	3400801	3400802	rs34562262	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	6p21.33	TNXB	rs34562262-C	0.059314	9E-12		0.03548271	[0.025-0.046] unit increase	Affymetrix [93095623] (imputed)	N
610	chr6_mcf_hap5	3400801	3400802	rs34562262	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	6p21.33	NR	rs34562262-?		2E-15	(AGER)	0.6405	[NR] unit decrease	Illumina [NR]	N
610	chr6_mcf_hap5	3400970	3400971	rs11969759	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RACGAP1	5,360 Icelandic ancestry individuals	NA	6p21.33		rs11969759-T	0.03907	1E-34		0.606915	[0.51-0.7] unit decrease	Illumina [7506463] (imputed)	N
610	chr6_mcf_hap5	3400970	3400971	rs11969759	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL18RAP	5,360 Icelandic ancestry individuals	NA	6p21.33		rs11969759-T	0.03907	2E-51		0.736692	[0.64-0.83] unit decrease	Illumina [7506463] (imputed)	N
610	chr6_mcf_hap5	3400970	3400971	rs11969759	30636644	Nazarian A	2019-01-12	Alzheimers Res Ther	Genome-wide analysis of genetic predisposition to Alzheimer's disease and related sex disparities.	Alzheimer's disease	952 European ancestry male cases, 1,789 European ancestry female cases, 6,337 European ancestry male controls, 8,402 European ancestry female controls	NA	6p21.33	TNXB	rs11969759-?	NR	2E-6	(females)	1.6222337		Affymetrix, Illumina [2928658] (imputed)	N
610	chr6_mcf_hap5	3404672	3404673	rs6937318	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	TNXB	rs6937318-T	NR	9E-16		0.0245113	[0.019-0.03] unit increase	Affymetrix [323123] (imputed)	N
610	chr6_mcf_hap5	3404672	3404673	rs6937318	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.33		rs6937318-C	0.513236	2E-15		1.0343082	[1.03-1.04]	Affymetrix, Illumina [9851866] (imputed)	N
610	chr6_mcf_hap5	3405703	3405704	rs369637	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	TNXB	rs369637-T	NR	9E-9		0.0231685	[0.015-0.031] unit increase	Affymetrix [323123] (imputed)	N
610	chr6_mcf_hap5	3405703	3405704	rs369637	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.33	ABHD16A, AGER, AGPAT1, AIF1, APOM, ATF6B, ATP6V1G2, ATP6V1G2-DDX39B, BAG6, BTNL2, C2, C2-AS1, C4A, C4B, C4B_2, C6orf10, C6orf15, C6orf25, C6orf47, C6orf48, CCHCR1, CDSN, CFB, CLIC1, CSNK2B, CYP21A1P, CYP21A2, DDAH2, DDX39B, DXO, EGFL8, EHMT2, FKBPL, GPANK1, GPSM3, HCG23, HCG26, HCG27, HCP5, HLA-B, HLA-C, HLA-DOB, HLA-DQA1, HLA-DQA2, HLA-DQB1, HLA-DQB2, HLA-DRA, HLA-DRB1, HLA-DRB5, HLA-DRB6, HSPA1A, HSPA1B, HSPA1L, LOC100507547, LSM2, LST1, LTA, LTB, LY6G5B, LY6G5C, LY6G6C, LY6G6D, LY6G6E, LY6G6F, MCCD1, MICA, MICB, MIR1236, MIR3135B, MIR4646, MIR6721, MIR6832, MIR6833, MIR6891, MSH5, MSH5-SAPCD1, NCR3, NELFE, NEU1, NFKBIL1, NOTCH4, PBX2, POU5F1, PPT2, PPT2-EGFL8, PRRC2A, PRRT1, PSMB8, PSMB8-AS1, PSMB9, PSORS1C1, PSORS1C2, PSORS1C3, RNF5, RNF5P1, SAPCD1, SAPCD1-AS1, SKIV2L, SLC44A4, SNORA38, SNORD117, SNORD48, SNORD52, SNORD84, STK19, TAP1, TAP2, TCF19, TNF, TNXA, TNXB, VARS, VWA7, ZBTB12	rs369637-?		2E-10		1.098901	[1.06-1.12]	Affymetrix, Illumina [NR]	N
610	chr6_mcf_hap5	3405947	3405948	rs1009382	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:0_[M+H]1+/Phosphatidylethanolamine_35:0_[M+H]1+/Phosphatidate_37:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	6p21.33		rs1009382-C	NR	4E-10		0.0841202	[0.058-0.111] unit decrease	Affymetrix [87696910] (imputed)	N
610	chr6_mcf_hap5	3406648	3406649	rs12198173	20041166	Fellay J	2009-12-24	PLoS Genet	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	6p21.33	TNXB	rs12198173-?	NR	3E-6	(progression)			Illumina [NR]	N
611	chr6_mcf_hap5	3407989	3407990	rs1150758	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p21.33	TNXB	rs1150758-C	NR	1E-10		0.0261542	[0.018-0.034] unit decrease	Affymetrix [323858] (imputed)	N
611	chr6_mcf_hap5	3409045	3409046	rs1150757	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	6p21.33	NR	rs1150757-A	0.111940064634901	1E-14		0.014838932	[0.011-0.019] unit decrease	NR [NR]	N
611	chr6_mcf_hap5	3409045	3409046	rs1150757	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	6p21.33	NR	rs1150757-A	0.111940064634901	3E-14		0.019090127	[0.014-0.024] unit decrease	NR [NR]	N
611	chr6_mcf_hap5	3409045	3409046	rs1150757	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	6p21.33	NR	rs1150757-A	0.111940064634901	1E-14		0.012505894	[0.0093-0.0157] unit decrease	NR [NR]	N
611	chr6_mcf_hap5	3409045	3409046	rs1150757	29769526	Estrada K	2018-05-16	Nat Commun	A whole-genome sequence study identifies genetic risk factors for neuromyelitis optica.	Neuromyelitis optica (AQP4-IgG-positive)	66 European ancestry cases, 784 European ancestry controls	66 European ancestry cases, 460 European ancestry controls	6p21.33	C4A, C4B	rs1150757-A	0.1	3E-16		4.66	[3.22-6.74]	Affymetrix [6804788] (imputed)	N
611	chr6_mcf_hap5	3409045	3409046	rs1150757	29769526	Estrada K	2018-05-16	Nat Commun	A whole-genome sequence study identifies genetic risk factors for neuromyelitis optica.	Neuromyelitis optica	66 European ancestry AQP4-IgG antibody seropositive cases, 63 European ancestry AQP4-IgG antibody seronegative cases, 784 European ancestry controls	66 European ancestry AQP4-IgG antibody seropositive cases, 20 European ancestry AQP4-IgG antibody seronegative cases, 460 European ancestry controls	6p21.33	C4A, C4B	rs1150757-A	0.10	7E-12		2.86	[1.98-4.14]	Affymetrix [6804788] (imputed)	N
611	chr6_mcf_hap5	3409045	3409046	rs1150757	27399966	Morris DL	2016-07-11	Nat Genet	Genome-wide association meta-analysis in Chinese and European individuals identifies ten new loci associated with systemic lupus erythematosus.	Systemic lupus erythematosus	1,659 Chinese ancestry cases, 3,398 Chinese ancestry controls, 4,036 European ancestry cases, 6,959 European ancestry controls	3,043 Chinese ancestry cases, 5,074 Chinese ancestry controls, 2,643 European ancestry cases, 9,032 European ancestry controls	6p21.33	MHC class III	rs1150757-?	0.092	2E-101	(EA)	2.53	[NR]	NR [6344733] (imputed)	N
611	chr6_mcf_hap5	3409045	3409046	rs1150757	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	NA	6p21.33	TNXB	rs1150757-A		6E-107		2.33	[NR]	Illumina [> 644674] (imputed)	N
611	chr6_mcf_hap5	3410540	3410541	rs9267797	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs9267797-T	0.015	7E-94	(Tenascin-X, TNXB.5698.60.3)	1.97	[1.77-2.17] unit increase	Affymetrix [10572788] (imputed)	N
611	chr6_mcf_hap5	3412583	3412584	rs204883	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SURF1	5,347 Icelandic ancestry individuals	NA	6p21.33		rs204883-A	0.3642	4E-14		0.138805	[0.1-0.17] unit decrease	Illumina [7506463] (imputed)	N
611	chr6_mcf_hap5	3412583	3412584	rs204883	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	6p21.33	NR	rs204883-A	0.404749301755246	2E-9		0.005591649	[0.0038-0.0074] unit increase	NR [NR]	N
611	chr6_mcf_hap5	3412583	3412584	rs204883	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	6p21.33	Intergenic	rs204883-A	0.414	1E-8	(MTAG)	0.0096	[0.0063-0.0129] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
611	chr6_mcf_hap5	3412583	3412584	rs204883	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	6p21.33	Intergenic	rs204883-A	0.3876	1E-10	(MTAG)	0.0151	[0.01-0.02] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
611	chr6_mcf_hap5	3412583	3412584	rs204883	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	6p21.33	Intergenic	rs204883-A	0.3876	7E-9		0.017	[0.011-0.023] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
611	chr6_mcf_hap5	3413456	3413457	rs1265889	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Nephrotic syndrome	775 European ancestry cases, 475,255 European ancestry controls, 1,314 East Asian ancestry cases, 177,412 East Asian ancestry controls	NA	6p21.33		rs1265889-A	NR	2E-16		0.524	[0.4-0.65] unit increase	Affymetrix, Illumina [25844401] (imputed)	N
611	chr6_mcf_hap5	3413784	3413785	rs3117189	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FTMT	5,365 Icelandic ancestry individuals	NA	6p21.33		rs3117189-A	0.2078	7E-41		0.308372	[0.26-0.35] unit decrease	Illumina [7506463] (imputed)	N
611	chr6_mcf_hap5	3418403	3418404	rs1150755	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	6p21.33	TNXB	rs1150755-?	NR	6E-117		1.3	[1.19-1.41]	Illumina [at least 5000000] (imputed)	N
611	chr6_mcf_hap5	3420459	3420460	rs204881	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p21.33	NR	rs204881-?	NR	5E-14		0.1561	[0.12-0.2] unit increase	Illumina [at least 560000] (imputed)	N
611	chr6_mcf_hap5	3424706	3424707	rs2021783	25249183	Lu X	2014-09-23	Hum Mol Genet	Genome-wide association study in Chinese identifies novel loci for blood pressure and hypertension.	Systolic blood pressure	11,816 Han Chinese ancestry individuals	69,146 Han Chinese ancestry individuals	6p21.33	CYP21A2	rs2021783-C	0.79	3E-9		0.68	[0.44-0.92] unit increase	Affymetrix, Illumina [2485448] (imputed)	N
611	chr6_mcf_hap5	3424706	3424707	rs2021783	25249183	Lu X	2014-09-23	Hum Mol Genet	Genome-wide association study in Chinese identifies novel loci for blood pressure and hypertension.	Hypertension	5,065 Han Chinese ancestry cases, 4,404 Han Chinese ancestry controls	29,799 Han Chinese ancestry cases, 39,347 Han Chinese ancestry controls	6p21.33	CYP21A2	rs2021783-C	0.79	4E-11				Affymetrix, Illumina [2485448] (imputed)	N
611	chr6_mcf_hap5	3424706	3424707	rs2021783	25249183	Lu X	2014-09-23	Hum Mol Genet	Genome-wide association study in Chinese identifies novel loci for blood pressure and hypertension.	Diastolic blood pressure	11,816 Han Chinese ancestry individuals	69,146 Han Chinese ancestry individuals	6p21.33	CYP21A2	rs2021783-C	0.79	2E-12		0.49	[0.35-0.63] unit increase	Affymetrix, Illumina [2485448] (imputed)	N
611	chr6_mcf_hap5	3427107	3427108	rs17201560	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		TNXB	rs17201560-?	NR	3E-10		1.80132	[NR] unit decrease	Affymetrix [NR] (imputed)	N
611	chr6_mcf_hap5	3429261	3429262	rs12211410	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6p21.33		rs12211410-T	0.085	2E-13	(conditional-joint)	0.0185	[0.014-0.023] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
611	chr6_mcf_hap5	3429905	3429906	rs185819	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.33		rs185819-T	0.533	5E-83				Affymetrix [10369434] (imputed)	N
611	chr6_mcf_hap5	3429905	3429906	rs185819	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p21.33		rs185819-T	0.533	1E-58				Affymetrix [10369434] (imputed)	N
611	chr6_mcf_hap5	3429905	3429906	rs185819	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Automobile speeding propensity	404,291 European ancestry individuals	NA	6p21.33	ATF6B	rs185819-T	0.5357	2E-12		0.01581973	[0.011-0.02] unit increase	Affymetrix [11514463] (imputed)	N
611	chr6_mcf_hap5	3429905	3429906	rs185819	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Systolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	6p21.33	TNXB	rs185819-C	0.513	2E-13	(EA, initial)	0.534	[0.39-0.68] unit increase	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
611	chr6_mcf_hap5	3429905	3429906	rs185819	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Systolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	6p21.33	TNXB	rs185819-C	0.513	1E-17		0.365	[0.28-0.45] unit increase	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
611	chr6_mcf_hap5	3429905	3429906	rs185819	18391951	Gudbjartsson DF	2008-04-06	Nat Genet	Many sequence variants affecting diversity of adult human height.	Height	30,968 European ancestry individuals	8,541 European ancestry individuals	6p21.33	HLA class III	rs185819-T	0.52	3E-8		5.2	[3.44-6.96] % s.d. increase	Affymetrix, Illumina [up to 304226]	N
611	chr6_mcf_hap5	3430596	3430597	rs1150754	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	TNXB	rs1150754-T	NR	9E-16		0.0330216	[0.025-0.041] unit decrease	Affymetrix [323858] (imputed)	N
611	chr6_mcf_hap5	3430596	3430597	rs1150754	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	TNXB	rs1150754-T	NR	3E-14		0.0312441	[0.023-0.039] unit decrease	Affymetrix [127266] (imputed)	N
611	chr6_mcf_hap5	3430596	3430597	rs1150754	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Myeloperoxidase levels	21,758 European ancestry individuals	9,173 individuals	6p21.33		rs1150754-T	0.15	7E-9		0.0636	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
611	chr6_mcf_hap5	3430596	3430597	rs1150754	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	6p21.33	TNXB	rs1150754-C	NR	3E-12	(EA)	1.117	[1.09-1.15]	Illumina [6627481] (imputed)	N
611	chr6_mcf_hap5	3430596	3430597	rs1150754	21408207	Chung SA	2011-03-03	PLoS Genet	Differential genetic associations for systemic lupus erythematosus based on anti-dsDNA autoantibody production.	Systemic lupus erythematosus	811 anti-dsDNA positive European ancestry cases, 906 anti-dsDNA negative European ancestry cases, 4,813 European ancestry controls	NA	6p21.33	TNXB	rs1150754-A	0.13	6E-29	(anti-dsDNA +)	2.21	[1.93-2.53]	Illumina [421318] (imputed)	N
611	chr6_mcf_hap5	3439702	3439703	rs1150753	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	6p21.33	NR	rs1150753-G	0.09	6E-19		1.25	[1.19-1.31]	Illumina [8468885] (imputed)	N
611	chr6_mcf_hap5	3439702	3439703	rs1150753	26316170	Demirci FY	2015-08-28	Arthritis Rheumatol	Identification of a New Susceptibility Locus for Systemic Lupus Erythematosus on Chromosome 12 in Individuals of European Ancestry.	Systemic lupus erythematosus	661 European ancestry cases, 487 European ancestry controls	4,467 European ancestry cases, 9,114 European ancestry controls	6p21.33	TNXB	rs1150753-?	NR	6E-9				Affymetrix [up to 700598]	N
611	chr6_mcf_hap5	3440302	3440303	rs774873925	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	TNXB	rs774873925-CA	NR	3E-8		0.0192957	[0.012-0.026] unit increase	Affymetrix [323123] (imputed)	N
611	chr6_mcf_hap5	3441173	3441174	rs57079996	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs57079996-?		1E-7		1.06	[1.04-1.09]	Illumina [7645193] (imputed)	N
611	chr6_mcf_hap5	3441173	3441174	rs57079996	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs57079996-?		4E-8		1.77	[1.45-2.18]	Illumina [7645193] (imputed)	N
611	chr6_mcf_hap5	3443729	3443730	rs41270458	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RACGAP1	5,360 Icelandic ancestry individuals	NA	6p21.33		rs41270458-A	0.02122	1E-45		0.927486	[0.8-1.06] unit decrease	Illumina [7506463] (imputed)	N
611	chr6_mcf_hap5	3443729	3443730	rs41270458	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL18RAP	5,360 Icelandic ancestry individuals	NA	6p21.33		rs41270458-A	0.02122	2E-37		0.831007	[0.7-0.96] unit decrease	Illumina [7506463] (imputed)	N
611	chr6_mcf_hap5	3444559	3444560	rs1150752	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p21.33	TNXB	rs1150752-C		7E-35		0.041	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
611	chr6_mcf_hap5	3444559	3444560	rs1150752	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	6p21.33	NR	rs1150752-C	0.112114488054202	6E-13		0.01584757	[0.012-0.02] unit decrease	NR [NR]	N
611	chr6_mcf_hap5	3446598	3446599	rs13199524	30552173	Aterido A	2018-12-14	Ann Rheum Dis	Genetic variation at the glycosaminoglycan metabolism pathway contributes to the risk of psoriatic arthritis but not psoriasis.	Psoriatic arthritis	744 Spanish ancestry cases, 1,454 Spanish ancestry controls	1,430 cases, 1,417 controls	6p21.33	NR	rs13199524-?	NR	6E-10		6.2	[NR] z-score increase	Illumina [1387382] (imputed)	N
611	chr6_mcf_hap5	3448326	3448327	rs116298992	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TNXB	5,363 Icelandic ancestry individuals	NA	6p21.32		rs116298992-T	0.03624	6E-299		1.674	[1.59-1.76] unit decrease	Illumina [7506463] (imputed)	N
611	chr6_mcf_hap5	3448326	3448327	rs116298992	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.32	NR	rs116298992-C	0.96390625	8E-63	(C2, 3186_2_2)	1.129958	[1-1.26] unit increase	Illumina [> 1000000] (imputed)	N
611	chr6_mcf_hap5	3448326	3448327	rs116298992	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.32	NR	rs116298992-C	0.96390625	6E-141	(TNXB, 5698_60_3)	1.6212647	[1.5-1.74] unit increase	Illumina [> 1000000] (imputed)	N
611	chr6_mcf_hap5	3448326	3448327	rs116298992	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.32	NR	rs116298992-C	0.96390625	5E-58	(ISG15, 14148_2_3)	1.0691733	[0.94-1.2] unit increase	Illumina [> 1000000] (imputed)	N
611	chr6_mcf_hap5	3448326	3448327	rs116298992	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.32	NR	rs116298992-C	0.96390625	3E-16	(DEFB119, 13455_10_3)	0.5401916	[0.41-0.67] unit decrease	Illumina [> 1000000] (imputed)	N
611	chr6_mcf_hap5	3448326	3448327	rs116298992	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.32	NR	rs116298992-C	0.96390625	3E-12	(MICA, 2730_58_2)	0.47020385	[0.34-0.6] unit increase	Illumina [> 1000000] (imputed)	N
611	chr6_mcf_hap5	3448326	3448327	rs116298992	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.32	NR	rs116298992-C	0.96390625	2E-42	(CFB, 4129_72_1)	0.90520996	[0.78-1.03] unit increase	Illumina [> 1000000] (imputed)	N
611	chr6_mcf_hap5	3448326	3448327	rs116298992	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.32	NR	rs116298992-C	0.96390625	1E-14	(FTMT, 8048_9_3)	0.51547647	[0.39-0.65] unit decrease	Illumina [> 1000000] (imputed)	N
611	chr6_mcf_hap5	3449902	3449903	rs41268896	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Atopic dermatitis	2,079 European ancestry cases, 3,867 European ancestry controls	NA	6p21.32	c6orf10	rs41268896-A	NR	4E-8		1.298	[1.238-1.361]	Affymetrix, Illumina, Perlegen [up to 5493100] (imputed)	N
611	chr6_mcf_hap5	3449907	3449908	rs41268899	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	TNXB, ATF6B	rs41268899-A	NR	4E-8		0.0257754	[0.017-0.035] unit increase	Affymetrix [321114] (imputed)	N
611	chr6_mcf_hap5	3450834	3450835	rs41268902	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	6p21.32	NR	rs41268902-A	NR	5E-6		1.09	[NR]	Illumina [7158791] (imputed)	N
611	chr6_mcf_hap5	3450836	3450837	rs28732173	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p21.32	NR	rs28732173-?	NR	4E-16		0.166	[0.13-0.21] unit decrease	Illumina [at least 560000] (imputed)	N
611	chr6_mcf_hap5	3450843	3450844	rs3117181	21829377	Lemaitre RN	2011-07-28	PLoS Genet	Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Plasma omega-3 polyunsaturated fatty acid levels (docosapentaenoic acid)	8,866 European ancestry individuals	NA	6p21.32	TNXB	rs3117181-C	NR	5E-7		0.02	[NR] % increase	Affymetrix, Illumina [NR]	N
611	chr6_mcf_hap5	3451720	3451721	rs3134954	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Intraocular pressure	133,492 European ancestry individuals	NA	6p21.32	TNXB	rs3134954-?	NR	3E-9		0.1058	[0.071-0.141] unit increase	Affymetrix, Illumina [up to 40000000] (imputed)	N
611	chr6_mcf_hap5	3454631	3454632	rs12153855	23886662	Weidinger S	2013-07-25	Hum Mol Genet	A genome-wide association study of atopic dermatitis identifies loci with overlapping effects on asthma and psoriasis.	Atopic dermatitis	1563 European ancestry cases, 4,054 European ancestry controls	2,286 European ancestry cases, 3,160 European ancestry controls	6p21.32	TNXB, CREBL1	rs12153855-T	NR	3E-14		1.581	[1.405-1.779]	Illumina [2406139] (imputed)	N
611	chr6_mcf_hap5	3454631	3454632	rs12153855	22694956	Cipriani V	2012-06-13	Hum Mol Genet	Genome-wide association study of age-related macular degeneration identifies associated variants in the TNXB-FKBPL-NOTCH4 region of chromosome 6p21.3.	Age-related macular degeneration	893 European ancestry cases, 2,199 European ancestry controls	1,411 European ancestry cases, 1,431 European ancestry controls	6p21.32	TNXB	rs12153855-C	0.011	1E-9		1.44	[1.28-1.63]	Illumina [2272849] (imputed)	N
611	chr6_mcf_hap5	3455390	3455391	rs429150	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	TNXB, ATF6B	rs429150-C	NR	3E-8		0.0158143	[0.01-0.021] unit increase	Affymetrix [321169] (imputed)	N
611	chr6_mcf_hap5	3455390	3455391	rs429150	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6p21.32	ATF6B, TNXB	rs429150-C	0.445264	8E-12		0.016466303	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
611	chr6_mcf_hap5	3455390	3455391	rs429150	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6p21.32		rs429150-T	0.5292	2E-9		0.0085	[0.0058-0.0112] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
611	chr6_mcf_hap5	3455390	3455391	rs429150	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6p21.32	Intergenic	rs429150-T	0.5292	1E-11	(MTAG)	0.0089	[0.0064-0.0114] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
611	chr6_mcf_hap5	3455390	3455391	rs429150	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	6p21.32	TNXB, ATF6B	rs429150-C	0.4446	3E-13		0.02583585	[0.019-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
611	chr6_mcf_hap5	3456326	3456327	rs2269426	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Neuroticism	274,107 British ancestry individuals	NA	6p21.32	NR	rs2269426-A	0.3594	3E-12		0.01334	[0.0096-0.0171] unit increase	NR [8968716] (imputed)	N
611	chr6_mcf_hap5	3456326	3456327	rs2269426	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	6p21.32	NR	rs2269426-A	0.37783192572683	3E-11		0.010916309	[0.0077-0.0141] unit increase	NR [NR]	N
611	chr6_mcf_hap5	3456326	3456327	rs2269426	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	6p21.32	NR	rs2269426-A	0.37783192572683	4E-11		0.006849158	[0.0048-0.0089] unit increase	NR [NR]	N
611	chr6_mcf_hap5	3456326	3456327	rs2269426	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	6p21.32	HLA-C	rs2269426-A	0.359398	1E-14		7.71	z score increase	NR [10847151] (imputed)	N
611	chr6_mcf_hap5	3456326	3456327	rs2269426	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling worry	372,869 European ancestry individuals	NA	6p21.32	HLA-C	rs2269426-A	0.359398	4E-15		7.868	unit increase	NR [10847151] (imputed)	N
611	chr6_mcf_hap5	3456326	3456327	rs2269426	19198610	Gudbjartsson DF	2009-02-08	Nat Genet	Sequence variants affecting eosinophil numbers associate with asthma and myocardial infarction.	Eosinophil counts	9,392 European ancestry individuals	12,118 European ancestry individuals, 5,212 East Asian ancestry individuals	6p21.32	MHC	rs2269426-T	0.76	3E-6	(EA)	4.6	[2.7-6.6] % standard unit increase	Illumina [312179]	N
611	chr6_mcf_hap5	3459394	3459395	rs17207986	20848476	Haritunians T	2010-11-01	Inflamm Bowel Dis	Genetic predictors of medically refractory ulcerative colitis.	Ulcerative colitis	324 European ancestry medically refractory ulcerative colitis cases, 537 European ancestry non-medically refractory ulcerative colitis cases, 2,601 European ancestry controls	NA	6p21.32	MHC	rs17207986-G	NR	1E-16	(Analysis III)	3.95	[NR]	Illumina [313720]	N
611	chr6_mcf_hap5	3459973	3459974	rs3130342	32469254	Matsunaga H	2020-05-29	Circ Genom Precis Med	Transethnic Meta-analysis of Genome-wide Association Studies Identifies Three New Loci and Characterizes Population-specific Differences for Coronary Artery Disease.	Coronary artery disease	15,302 Japanese ancestry cases, 76,014 European and East Asian ancestry cases, 36,140 Japanese ancestry controls, 264,785 European and East Asian ancestry controls	NA	6p21.32	TNXB, ATF6B	rs3130342-C	0.83	3E-9		1.08	[1.06-1.09]	Illumina [5167567] (imputed)	N
611	chr6_mcf_hap5	3459973	3459974	rs3130342	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	6p21.32	TNXB, ATF6B	rs3130342-A	0.149	5E-10		0.126	[0.087-0.165] unit decrease	Affymetrix [~ 11900000] (imputed)	N
611	chr6_mcf_hap5	3460018	3460019	rs1269852	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ISG15	5,349 Icelandic ancestry individuals	NA	6p21.32		rs1269852-C	0.08142	2E-98		0.682855	[0.62-0.75] unit increase	Illumina [7506463] (imputed)	N
611	chr6_mcf_hap5	3460018	3460019	rs1269852	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	6p21.32	NR	rs1269852-G	0.0755467	2E-8		0.067160755	[0.044-0.09] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
611	chr6_mcf_hap5	3460210	3460211	rs9469084	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	6p21.32	ATF6B, TNXB	rs9469084-T	0.065593	5E-11		0.0346535	[0.027-0.043] unit decrease	Affymetrix [93095623] (imputed)	N
611	chr6_mcf_hap5	3463002	3463003	rs8111	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ATF6B	5,359 Icelandic ancestry individuals	NA	6p21.32		rs8111-T	0.2409	7E-30		0.245233	[0.2-0.29] unit increase	Illumina [7506463] (imputed)	N
611	chr6_mcf_hap5	3463002	3463003	rs8111	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	ATF6B	rs8111-T	0.266	1E-15	(Cyclic AMP-dependent transcription factor ATF-6 alpha, ATF6.11277.23.3)	0.22	[0.16-0.28] unit decrease	Affymetrix [10572788] (imputed)	N
611	chr6_mcf_hap5	3463002	3463003	rs8111	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling hurt	372,047 European ancestry individuals	NA	6p21.32	HLA-C	rs8111-T	0.251639	1E-8		5.73	z score increase	NR [10847151] (imputed)	N
611	chr6_mcf_hap5	3463002	3463003	rs8111	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p21.32	ATF6B	rs8111-?	0.6	1E-6	(Turkish)	1.5873016	[1.32-1.92]	Illumina [up to 547389]	N
611	chr6_mcf_hap5	3463127	3463128	rs8283	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TYK2	5,361 Icelandic ancestry individuals	NA	6p21.32		rs8283-G	0.1925	3E-11		0.158998	[0.11-0.21] unit increase	Illumina [7506463] (imputed)	N
611	chr6_mcf_hap5	3463127	3463128	rs8283	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL21	5,363 Icelandic ancestry individuals	NA	6p21.32		rs8283-G	0.1925	1E-29		0.268365	[0.22-0.31] unit increase	Illumina [7506463] (imputed)	N
611	chr6_mcf_hap5	3463127	3463128	rs8283	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FTMT	5,365 Icelandic ancestry individuals	NA	6p21.32		rs8283-G	0.1925	1E-46		0.339863	[0.29-0.39] unit increase	Illumina [7506463] (imputed)	N
611	chr6_mcf_hap5	3463127	3463128	rs8283	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C4A;C4B	5,353 Icelandic ancestry individuals	NA	6p21.32		rs8283-G	0.1925	4E-102		0.479658	[0.44-0.52] unit increase	Illumina [7506463] (imputed)	N
611	chr6_mcf_hap5	3463127	3463128	rs8283	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.32	ATF6B, TNXB	rs8283-G	0.1906439	2E-17	(Complement C4)	0.487	[0.38-0.6] unit increase	Affymetrix [509946]	N
611	chr6_mcf_hap5	3468681	3468682	rs2228628	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ATF6	5,363 Icelandic ancestry individuals	NA	6p21.32		rs2228628-C	0.25	4E-19		0.190713	[0.15-0.23] unit decrease	Illumina [7506463] (imputed)	N
611	chr6_mcf_hap5	3468969	3468970	rs204888	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.32	TNXB, ATF6B, FKBPL	rs204888-T	0.09628887	2E-12	(EA, Complement C4b)	0.5278	[0.38-0.67] unit increase	Affymetrix [509946]	N
611	chr6_mcf_hap5	3474420	3474421	rs204893	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.32		rs204893-T	0.566	3E-36				Affymetrix [10369434] (imputed)	N
611	chr6_mcf_hap5	3474420	3474421	rs204893	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.32		rs204893-T	0.566	1E-56				Affymetrix [10369434] (imputed)	N
611	chr6_mcf_hap5	3474420	3474421	rs204893	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling nervous	373,121 European ancestry individuals	NA	6p21.32	HLA-C	rs204893-T	0.441671	8E-11		6.5	z score decrease	NR [10847151] (imputed)	N
611	chr6_mcf_hap5	3474420	3474421	rs204893	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	6p21.32	intergenic	rs204893-T	0.55833	1E-12		7.076	z score decrease	Illumina [18485882] (imputed)	N
611	chr6_mcf_hap5	3475828	3475829	rs3130288	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p21.32	NR	rs3130288-A	0.12	5E-11		1.16	[1.11-1.22]	Affymetrix [9886854] (imputed)	N
611	chr6_mcf_hap5	3475828	3475829	rs3130288	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p21.32	NR	rs3130288-A	0.12	5E-14			[NR]	Affymetrix [9886854] (imputed)	N
611	chr6_mcf_hap5	3475828	3475829	rs3130288	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in never smokers	8,631 European ancestry cases, 120,544 European ancestry controls	NA	6p21.32	NR	rs3130288-A	0.12	2E-11		1.17	[1.12-1.23]	Affymetrix [9886854] (imputed)	N
611	chr6_mcf_hap5	3475828	3475829	rs3130288	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome)	345 Swedish ancestry cases, 2,025 Swedish ancestry controls	251 European ancestry cases, 4,901 European ancestry controls	6p21.32	CREBL1	rs3130288-A	0.345	4E-66		4.16	[3.54-4.90]	Illumina [118177]	N
611	chr6_mcf_hap5	3475828	3475829	rs3130288	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p21.32	CREBL1	rs3130288-A	0.345	3E-33				Illumina [118177]	N
611	chr6_mcf_hap5	3477438	3477439	rs41268905	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	6p21.32	FKBPL	rs41268905-A	0.1048	4E-11		0.003	[0.002-0.004] unit decrease	Affymetrix [15275733] (imputed)	N
611	chr6_mcf_hap5	3482128	3482129	rs3134963	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	6p21.32	FKBPL, PRRT1	rs3134963-T	0.149	3E-10		0.128	[0.089-0.167] unit decrease	Affymetrix [~ 11900000] (imputed)	N
611	chr6_mcf_hap5	3482504	3482505	rs13211318	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Strep throat	52,487 European ancestry cases, 22,017 European ancestry controls	NA	6p21.32	NR	rs13211318-?	NR	3E-7		0.051	[0.031-0.071] unit increase	Illumina [at least 560000] (imputed)	N
611	chr6_mcf_hap5	3483573	3483574	rs145827824	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.32	NR	rs145827824-G	0.011	2E-16		0.699809	[0.53-0.87] unit increase	Affymetrix [up to 8900000] (imputed)	N
611	chr6_mcf_hap5	3483573	3483574	rs145827824	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.32	NR	rs145827824-G	0.011	1E-8	(women)	0.797658	[0.53-1.07] unit increase	Affymetrix [up to 8900000] (imputed)	N
611	chr6_mcf_hap5	3483573	3483574	rs145827824	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.32	NR	rs145827824-G	0.011	1E-7	(men)	0.57225	[0.36-0.78] unit increase	Affymetrix [up to 8900000] (imputed)	N
611	chr6_mcf_hap5	3486963	3486964	rs3096698	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL18RAP	5,360 Icelandic ancestry individuals	NA	6p21.32		rs3096698-T	0.4309	1E-12		0.134973	[0.098-0.172] unit decrease	Illumina [7506463] (imputed)	N
611	chr6_mcf_hap5	3486963	3486964	rs3096698	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	6p21.32	PRRT1	rs3096698-T	0.3668	6E-15		0.2611	[0.2-0.33] mmHg decrease	Affymetrix [NR] (imputed)	N
611	chr6_mcf_hap5	3489802	3489803	rs204999	23022100	Franceschini N	2012-09-26	Am J Hum Genet	Discovery and fine mapping of serum protein loci through transethnic meta-analysis.	Serum total protein level	Up to 25,539 European ancestry individuals, 10,168 Japanese ancestry individuals	NA		intergenic	rs204999-A	0.74	4E-11		0.0266	[0.019-0.034] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
611	chr6_mcf_hap5	3489802	3489803	rs204999	23022100	Franceschini N	2012-09-26	Am J Hum Genet	Discovery and fine mapping of serum protein loci through transethnic meta-analysis.	Serum total protein level	Up to 25,539 European ancestry individuals, 10,168 Japanese ancestry individuals	NA		intergenic	rs204999-A	0.74	3E-9	(EA)	0.025	[0.017-0.033] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
611	chr6_mcf_hap5	3489802	3489803	rs204999	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA		intergenic	rs204999-G	0.2643	9E-40		2.44	[NR]	Illumina [242824]	N
611	chr6_mcf_hap5	3490337	3490338	rs77619009	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.32		rs77619009-A	0.944	4E-16				Affymetrix [10369434] (imputed)	N
611	chr6_mcf_hap5	3490406	3490407	rs3130277	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	PRRT1	rs3130277-C	NR	2E-8		0.0208014	[0.014-0.028] unit decrease	Affymetrix [323858] (imputed)	N
611	chr6_mcf_hap5	3490846	3490847	rs565981183	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs565981183-CA	0.876	1E-11		1.192	[1.14-1.24]	Illumina [11270530] (imputed)	N
611	chr6_mcf_hap5	3492448	3492449	rs3130279	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL21	5,363 Icelandic ancestry individuals	NA	6p21.32		rs3130279-A	0.207	5E-14		0.174333	[0.13-0.22] unit increase	Illumina [7506463] (imputed)	N
611	chr6_mcf_hap5	3494337	3494338	rs9296009	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	PRRT1	rs9296009-T	0.216	7E-13	(UDP-N-acetylhexosamine pyrophosphorylase, UAP1.13580.2.3)	0.21	[0.15-0.27] unit decrease	Affymetrix [10572788] (imputed)	N
611	chr6_mcf_hap5	3494337	3494338	rs9296009	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	PRRT1	rs9296009-T	0.216	3E-37	(Rac GTPase-activating protein 1, RACGAP1.13587.10.3)	0.37	[0.31-0.43] unit decrease	Affymetrix [10572788] (imputed)	N
611	chr6_mcf_hap5	3494337	3494338	rs9296009	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	PRRT1	rs9296009-T	0.196796488164359	4E-6	(IGP18)	0.1779	[0.1-0.25] unit decrease	Illumina [~ 2500000] (imputed)	N
611	chr6_mcf_hap5	3494337	3494338	rs9296009	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	PRRT1	rs9296009-T	0.19676420855615	4E-6	(IGP25)	0.1773	[0.1-0.25] unit decrease	Illumina [~ 2500000] (imputed)	N
611	chr6_mcf_hap5	3494337	3494338	rs9296009	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	PRRT1	rs9296009-T	0.196432337204109	4E-8	(IGP23)	0.2111	[0.14-0.29] unit decrease	Illumina [~ 2500000] (imputed)	N
611	chr6_mcf_hap5	3495044	3495045	rs28732178	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	6p21.32	NR	rs28732178-?	NR	8E-11		6.496	NR z score decrease	Illumina [at least 830937] (imputed)	N
611	chr6_mcf_hap5	3499720	3499721	rs3131283	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	PRRT1	rs3131283-T	NR	4E-16		0.0353753	[0.027-0.044] unit increase	Affymetrix [323123] (imputed)	N
611	chr6_mcf_hap5	3500537	3500538	rs1053924	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:0_[M+H]1+/Phosphatidylethanolamine_35:0_[M+H]1+/Phosphatidate_37:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	6p21.32		rs1053924-T	NR	3E-10		0.0786544	[0.054-0.103] unit decrease	Affymetrix [87696910] (imputed)	N
611	chr6_mcf_hap5	3502294	3502295	rs3096696	25987655	Fernandez CA	2015-05-18	Blood	Genome-wide analysis links NFATC2 with asparaginase hypersensitivity.	Asparaginase hypersensitivity in acute lymphoblastic leukemia	3,126 child cases	182 child cases	6p21.32	PPT2	rs3096696-A		4E-6		1.478		Affymetrix [NR]	N
611	chr6_mcf_hap5	3507305	3507306	rs3134950	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:0_[M+H]1+/Phosphatidylethanolamine_35:0_[M+H]1+/Phosphatidate_37:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	6p21.32		rs3134950-C	NR	3E-16		0.100569	[0.076-0.125] unit decrease	Affymetrix [87696910] (imputed)	N
611	chr6_mcf_hap5	3507305	3507306	rs3134950	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	6p21.32	EGFL8	rs3134950-A	0.622	1E-8		0.01510972	[0.0099-0.0203] unit decrease	Affymetrix [~ 11515000] (imputed)	N
611	chr6_mcf_hap5	3507305	3507306	rs3134950	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	6p21.32	PPT2	rs3134950-A	0.624	1E-10		0.0079	[0.0055-0.0103] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
611	chr6_mcf_hap5	3507305	3507306	rs3134950	24823311	Guan W	2014-05-13	Circ Cardiovasc Genet	Genome-wide association study of plasma N6 polyunsaturated fatty acids within the cohorts for heart and aging research in genomic epidemiology consortium.	Plasma omega-6 polyunsaturated fatty acid levels (adrenic acid)	8,631 European ancestry individuals	NA	6p21.32	AGPAT1, PPT2	rs3134950-A	0.625	6E-6		0.01	[NR] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
611	chr6_mcf_hap5	3507305	3507306	rs3134950	23362303	Wu JH	2013-01-29	Circ Cardiovasc Genet	Genome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortium.	Oleic acid (18:1n-9) levels	8,961 European ancestry individuals		6p21.32	EGFL8, AGPAT1, PPT2	rs3134950-A	NR	1E-6		0.0945	unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
611	chr6_mcf_hap5	3508222	3508223	rs9267812	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.32		rs9267812-C	0.865	1E-35				Affymetrix [10369434] (imputed)	N
611	chr6_mcf_hap5	3508222	3508223	rs9267812	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.32		rs9267812-C	0.865	2E-29				Affymetrix [10369434] (imputed)	N
611	chr6_mcf_hap5	3508222	3508223	rs9267812	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.32		rs9267812-C	0.865	7E-20				Affymetrix [10369434] (imputed)	N
611	chr6_mcf_hap5	3508222	3508223	rs9267812	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.32		rs9267812-C	0.865	9E-41				Affymetrix [10369434] (imputed)	N
611	chr6_mcf_hap5	3508222	3508223	rs9267812	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p21.32		rs9267812-C	0.865	8E-22				Affymetrix [10369434] (imputed)	N
611	chr6_mcf_hap5	3508222	3508223	rs9267812	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	6p21.32	PPT2	rs9267812-T	0.135386	2E-6		0.021886	[0.013-0.031] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
611	chr6_mcf_hap5	3508222	3508223	rs9267812	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	6p21.32	PPT2	rs9267812-T	0.132705	3E-9		0.022969	[0.015-0.031] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
611	chr6_mcf_hap5	3508222	3508223	rs9267812	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs9267812-T	0.136	1E-30	(Rac GTPase-activating protein 1, RACGAP1.13587.10.3)	0.4	[0.32-0.48] unit decrease	Affymetrix [10572788] (imputed)	N
611	chr6_mcf_hap5	3514338	3514339	rs3096697	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.32	EGFL8	rs3096697-T	0.2054	1E-41		2.58	[NR]	Illumina [242824]	N
611	chr6_mcf_hap5	3516375	3516376	rs1061808	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for LDL particles	115,082 European ancestry individuals	NA	6p21.32		rs1061808-T	0.3719	6E-9		0.0242981	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
611	chr6_mcf_hap5	3516375	3516376	rs1061808	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	6p21.32		rs1061808-G	NR	1E-22		0.0181	[0.015-0.022] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
611	chr6_mcf_hap5	3516375	3516376	rs1061808	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:0_[M+H]1+/Phosphatidylethanolamine_35:0_[M+H]1+/Phosphatidate_37:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	6p21.32		rs1061808-T	NR	1E-15		0.0960224	[0.072-0.12] unit decrease	Affymetrix [87696910] (imputed)	N
611	chr6_mcf_hap5	3516375	3516376	rs1061808	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	6p21.32	AGPAT1	rs1061808-T	0.3698	1E-23		0.25	[0.2-0.3] mmHg decrease	Affymetrix [NR] (imputed)	N
611	chr6_mcf_hap5	3516375	3516376	rs1061808	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs1061808-G	0.631	8E-37	(Tenascin-X, TNXB.5698.60.3)	0.32	[0.28-0.36] unit increase	Affymetrix [10572788] (imputed)	N
611	chr6_mcf_hap5	3516375	3516376	rs1061808	22359512	Demirkan A	2012-02-16	PLoS Genet	Genome-wide association study identifies novel loci associated with circulating phospho- and sphingolipid concentrations.	Phospholipid levels (plasma)	4,034 European ancestry individuals	NA	6p21.32	AGPAT1	rs1061808-?	NR	8E-10	(proportions)	0.9	[NR] % increase	Illumina [NR] (imputed)	N
611	chr6_mcf_hap5	3518373	3518374	rs3130283	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Angina pectoris	30,025 European ancestry cases, 440,906 European ancestry controls, 14,007 East Asian ancestry cases, 145,158 East Asian ancestry controls	NA	6p21.32		rs3130283-C	NR	3E-11		0.0776	[0.055-0.101] unit increase	Affymetrix, Illumina [25842036] (imputed)	N
611	chr6_mcf_hap5	3518373	3518374	rs3130283	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	6p21.32	NR	rs3130283-C	0.8533	6E-27		0.0617	[0.051-0.073] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
611	chr6_mcf_hap5	3518445	3518446	rs114004994	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IFNAR1	5,357 Icelandic ancestry individuals	NA	6p21.32		rs114004994-C	0.04783	3E-14		0.323386	[0.24-0.41] unit decrease	Illumina [7506463] (imputed)	N
611	chr6_mcf_hap5	3518445	3518446	rs114004994	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA	6p21.32	PPT2-EGFL8	rs114004994-?	NR	5E-9		1.80656	[NR] unit decrease	Affymetrix [NR] (imputed)	N
611	chr6_mcf_hap5	3520315	3520316	rs3130284	25987655	Fernandez CA	2015-05-18	Blood	Genome-wide analysis links NFATC2 with asparaginase hypersensitivity.	Asparaginase hypersensitivity in acute lymphoblastic leukemia	3,126 child cases	182 child cases	6p21.32	AGPAT1	rs3130284-C	NR	7E-6		1.464		Affymetrix [NR]	N
611	chr6_mcf_hap5	3525535	3525536	rs2269423	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:0_[M+H]1+/Phosphatidylethanolamine_35:0_[M+H]1+/Phosphatidate_37:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	6p21.32		rs2269423-A	NR	9E-17		0.0987433	[0.075-0.122] unit decrease	Affymetrix [87696910] (imputed)	N
611	chr6_mcf_hap5	3526320	3526321	rs3134945	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.32	RNF5	rs3134945-T	0.2049	2E-40		2.54	[NR]	Illumina [242824]	N
611	chr6_mcf_hap5	3526875	3526877	rs41315238	34782693	Yamada M	2021-11-15	Commun Biol	Genetic loci for lung function in Japanese adults with adjustment for exhaled nitric oxide levels as airway inflammation indicator.	Lung function (FEV1/FVC)	14,061 Japanese ancestry individuals	5,661 Japanese ancestry individuals	6p21.32		rs41315238-A	0.1513	7E-24		0.1542	[0.12-0.18] unit increase	Affymetrix [8587571] (imputed)	N
611	chr6_mcf_hap5	3526983	3526984	rs41268928	26083729	Maruthur NM	2015-06-17	PLoS One	Genetics of Plasma Soluble Receptor for Advanced Glycation End-Products and Cardiovascular Outcomes in a Community-based Population: Results from the Atherosclerosis Risk in Communities Study.	Advanced glycation end-product levels	581 Black individuals, 1,737 European ancestry individuals	NA	6p21.32	RNF5, NOTCH4, AGER	rs41268928-C	0.04	3E-16	(EA)	0.69	unit decrease	Affymetrix [up to 9100000] (imputed)	N
611	chr6_mcf_hap5	3527587	3527588	rs3134943	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.32	RNF5	rs3134943-T	NR	2E-7	(women)	0.0338184	[0.021-0.047] unit increase	Illumina [13520550] (imputed)	N
611	chr6_mcf_hap5	3527857	3527858	rs1062070	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Waist circumference variance	347,158 European ancestry individuals	NA	6p21.32	RNF5	rs1062070-?	NR	7E-12				NR [5554549] (imputed)	N
611	chr6_mcf_hap5	3527857	3527858	rs1062070	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Waist circumference	347,158 European ancestry individuals	NA	6p21.32	RNF5	rs1062070-?	NR	6E-10				NR [5554549] (imputed)	N
611	chr6_mcf_hap5	3529086	3529087	rs2071288	26083729	Maruthur NM	2015-06-17	PLoS One	Genetics of Plasma Soluble Receptor for Advanced Glycation End-Products and Cardiovascular Outcomes in a Community-based Population: Results from the Atherosclerosis Risk in Communities Study.	Advanced glycation end-product levels	581 Black individuals, 1,737 European ancestry individuals	NA	6p21.32	AGER, RNF5, NOTCH4	rs2071288-T	0.1	2E-8	(Blacks)	0.56	unit decrease	Affymetrix [up to 9100000] (imputed)	N
611	chr6_mcf_hap5	3529627	3529628	rs9391855	33766948	Zhu Z	2021-03-25	Eur Respir J	A large-scale genome-wide association analysis of lung function in the Chinese population identifies novel loci and highlights shared genetic etiology with obesity.	Lung function (FEV1/FVC)	100,285 Chinese ancestry individuals	NA	6p21.32		rs9391855-C	0.78	2E-22		0.053	unit decrease	Affymetrix [NR] (imputed)	N
611	chr6_mcf_hap5	3531269	3531270	rs2070600	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein AGER	5,368 Icelandic ancestry individuals	NA	6p21.32		rs2070600-T	0.04774	1E-31		0.516865	[0.43-0.6] unit decrease	Illumina [7506463] (imputed)	N
611	chr6_mcf_hap5	3531269	3531270	rs2070600	33909500	Moll M	2021-04-28	Am J Physiol Lung Cell Mol Physiol	A Systematic Analysis of Protein-altering Exonic Variants in Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease	up to 31,465 European ancestry cases, up to 203,688 European ancestry controls, up to 1,413 African ancestry cases, up to 6,080 African ancestry controls, up to 287 East Asian ancestry cases, up to 7,484 East Asian ancestry controls, up to 61 Hispanic cases, up to 613 Hispanic controls	NA	6p21.32	AGER	rs2070600-C	0.94	1E-16		1.19	[1.15 -1.25]	Illumina [at least 109036]	N
611	chr6_mcf_hap5	3531269	3531270	rs2070600	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs2070600-T	NR	9E-12		1.2804097	[1.19-1.38]	Affymetrix [7846216] (imputed)	N
611	chr6_mcf_hap5	3531269	3531270	rs2070600	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	6p21.32	AGER	rs2070600-C	0.94	1E-17		1.21	[1.15-1.26]	Affymetrix, Illumina [6224355] (imputed)	N
611	chr6_mcf_hap5	3531269	3531270	rs2070600	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	6p21.32	AGER	rs2070600-T	0.0629	2E-45		0.073	[0.063-0.083] unit increase	Affymetrix [19819130] (imputed)	N
611	chr6_mcf_hap5	3531269	3531270	rs2070600	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	6p21.32	AGER	rs2070600-T	0.0629	8E-15		0.0379	[0.028-0.048] unit decrease	Affymetrix [19819130] (imputed)	N
611	chr6_mcf_hap5	3531269	3531270	rs2070600	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	6p21.32	AGER	rs2070600-T	0.0629	3E-189		0.1452	[0.14-0.15] unit increase	Affymetrix [19819130] (imputed)	N
611	chr6_mcf_hap5	3531269	3531270	rs2070600	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	6p21.32	AGER	rs2070600-T	0.0629	5E-11		0.0318	[0.022-0.041] unit increase	Affymetrix [19819130] (imputed)	N
611	chr6_mcf_hap5	3531269	3531270	rs2070600	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	AGER	rs2070600-T	0.067	4E-33	(Advanced glycosylation end product-specific receptor, soluble, AGER.4125.52.2)	0.57	[0.47-0.67] unit decrease	Affymetrix [10572788] (imputed)	N
611	chr6_mcf_hap5	3531269	3531270	rs2070600	28369058	Folkersen L	2017-04-03	PLoS Genet	Mapping of 79 loci for 83 plasma protein biomarkers in cardiovascular disease.	Blood protein levels in cardiovascular risk	3,394 European ancestry individuals	2,639 individuals	6p21.32	AGER	rs2070600-T	0.04	5E-12		0.37	unit decrease	Illumina [5270624] (imputed)	N
611	chr6_mcf_hap5	3531269	3531270	rs2070600	28166215	Hobbs BD	2017-02-06	Nat Genet	Genetic loci associated with chronic obstructive pulmonary disease overlap with loci for lung function and pulmonary fibrosis.	Chronic obstructive pulmonary disease	11,157 European ancestry cases, 36,699 European ancestry controls, 1,142 African American cases, 2,380 African American controls, 199 Korean ancestry cases, 6,741 Korean ancestry controls, 52 Hispanic cases, 548 Hispanic controls.	12,051 European ancestry cases, 11,111 European ancestry controls, 153 Korean ancestry cases, 205 Korean ancestry controls.	6p21.32	AGER	rs2070600-C	0.95	6E-10		1.24	[1.16-1.32]	Affymetrix, Illumina [NR] (imputed)	N
611	chr6_mcf_hap5	3531269	3531270	rs2070600	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FEV1/FVC)	48,943 European ancestry individuals	57,176 European ancestry individuals, 38,199 individuals.	6p21.32	AGER	rs2070600-T	0.0634	3E-25		0.14	[0.11-0.17] unit increase	Affymetrix [27624732] (imputed)	N
611	chr6_mcf_hap5	3531269	3531270	rs2070600	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	6p21.32	NR	rs2070600-?		3E-22	(AGER)	0.7091	[NR] unit decrease	Illumina [NR]	N
611	chr6_mcf_hap5	3531269	3531270	rs2070600	26030696	Cho MH	2015-06-01	Am J Respir Crit Care Med	A Genome-Wide Association Study of Emphysema and Airway Quantitative Imaging Phenotypes.	Percentage gas trapping	3,243 European ancestry chronic obstructive pulmonary disease cases, 901 African American chronic obstructive pulmonary disease cases,  3,062 European ancestry controls, 2,132 African American controls	NA	6p21.32	AGER	rs2070600-T	NR	4E-9	(All)	0.23	[0.15-0.31] unit decrease	Illumina [6900000] (imputed)	N
611	chr6_mcf_hap5	3531269	3531270	rs2070600	26030696	Cho MH	2015-06-01	Am J Respir Crit Care Med	A Genome-Wide Association Study of Emphysema and Airway Quantitative Imaging Phenotypes.	Emphysema imaging phenotypes	5,385 European ancestry chronic obstructive pulmonary disease cases, 901 African American chronic obstructive pulmonary disease cases, 3,613 European ancestry controls, 2,132 African American controls	NA	6p21.32	AGER	rs2070600-T	NR	5E-9	(%LAA-950, All)	0.14	[-0.07560-0.35560] unit decrease	Illumina [7600000] (imputed)	N
611	chr6_mcf_hap5	3531269	3531270	rs2070600	23284291	Hancock DB	2012-12-20	PLoS Genet	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (smoking interaction)	50,047 European ancestry individuals	NA	6p21.32	AGER	rs2070600-?	NR	1E-21	(FEV1/FVC, Pack-years)			NR [~ 2500000] (imputed)	N
611	chr6_mcf_hap5	3531269	3531270	rs2070600	20010835	Hancock DB	2009-12-13	Nat Genet	Meta-analyses of genome-wide association studies identify multiple loci associated with pulmonary function.	Pulmonary function	20,890 European ancestry individuals	16,178 European ancestry individuals	6p21.32	AGER, PPT2	rs2070600-T	0.04	3E-14	(FEV1/FVC)	1.0	[NR] % increase	Affymetrix, Illumina [2534500] (imputed)	N
611	chr6_mcf_hap5	3531269	3531270	rs2070600	20010834	Repapi E	2009-12-13	Nat Genet	Genome-wide association study identifies five loci associated with lung function.	Pulmonary function	20,288 European ancestry individuals	up to 54,276 European ancestry individuals	6p21.32	AGER	rs2070600-T	0.06	3E-15	(FEV1/FVC)	0.088	[0.066-0.110] s.d. increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
611	chr6_mcf_hap5	3532213	3532214	rs1800624	33766948	Zhu Z	2021-03-25	Eur Respir J	A large-scale genome-wide association analysis of lung function in the Chinese population identifies novel loci and highlights shared genetic etiology with obesity.	Lung function (FEV1/FVC)	100,285 Chinese ancestry individuals	NA	6p21.32		rs1800624-A	0.87	3E-9		0.039	unit increase	Affymetrix [NR] (imputed)	N
611	chr6_mcf_hap5	3532268	3532269	rs1800625	26876947	Saito T	2016-02-11	Biol Psychiatry	Pharmacogenomic Study of Clozapine-Induced Agranulocytosis/Granulocytopenia in a Japanese Population.	Clozapine-induced agranulocytosis/granulocytopenia in treatment-resistant schizophrenia	50 Japanese ancestry cases, 2905 Japanese ancestry controls	NA	6p21.32	ZDHHC20P2, HCG25, HCG26, LST1, MICA, FKBPL, AGPAT1, PBX2, NOTCH4, C6orf10, MHC, HLA-X, HCP5, MSH5, C6orf26	rs1800625-G	0.084	3E-9		3.78	[3.34-4.22]	Illumina [522694]	N
611	chr6_mcf_hap5	3532268	3532269	rs1800625	26546620	Xu CF	2015-11-06	Clin Cancer Res	HLA-B*57:01 Confers Susceptibility to Pazopanib-Associated Liver Injury in Patients with Cancer.	Response to Pazopanib in cancer (hepatotoxicity)	Up to 844 European ancestry cases, up to 325 Asian ancestry cases, up to 19 cases	Up to 811 European ancestry cases, up to 114 Asian ancestry cases, up to 77 cases	6p21.32	AGER	rs1800625-G	NR	8E-9	(Time to ALT>3 x upper limit of normal event)	1.8	[1.5-2.1]	Illumina [6736730] (imputed)	N
611	chr6_mcf_hap5	3533164	3533165	rs201026476	32488134	Auckland K	2020-06-02	Sci Rep	The Human Leukocyte Antigen Locus and Rheumatic Heart Disease Susceptibility in South Asians and Europeans.	Rheumatic heart disease	510 Northern Indian cases, 344 Northern Indian controls, 162 Fijian Indian cases, 147 Fijian Indian controls	150 European ancestry cases, 1,309 European ancestry controls	6p21.32	PBX2	rs201026476-?		3E-10		1.81	[1.51-2.18]	Illumina [6925553] (imputed)	N
611	chr6_mcf_hap5	3533229	3533230	rs169504	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	PBX2, XXbac-BPG300A18.13	rs169504-A	NR	4E-9		0.0216001	[0.014-0.029] unit decrease	Affymetrix [319769] (imputed)	N
611	chr6_mcf_hap5	3533229	3533230	rs169504	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	PBX2, XXbac-BPG300A18.13	rs169504-A	NR	3E-12		0.0279533	[0.02-0.036] unit increase	Affymetrix [323123] (imputed)	N
611	chr6_mcf_hap5	3533229	3533230	rs169504	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Anxiety	at least 23,606 European ancestry cases, at least 113,351 European ancestry controls	624,615 European ancestry cases, 1,310,854 European ancestry controls	6p21.32	PBX2, XXbac, BPG300A18.13	rs169504-C	0.1481	5E-28		0.03352553	[0.027-0.04] unit increase	NR [9417325] (imputed)	N
611	chr6_mcf_hap5	3533229	3533230	rs169504	29899525	Klimentidis YC	2018-06-13	Int J Obes (Lond)	Genome-wide association study of habitual physical activity in over 377,000 UK Biobank participants identifies multiple variants including CADM2 and APOE.	Moderate to vigorous physical activity levels	377,234 European ancestry individuals	NA	6p21.32	PBX2	rs169504-C	0.81	5E-11	(model 2)	0.018	unit increase	Affymetrix [11800000] (imputed)	N
611	chr6_mcf_hap5	3533229	3533230	rs169504	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p21.32	NR	rs169504-?	NR	5E-9		0.0694	[0.046-0.093] unit increase	Illumina [at least 560000] (imputed)	N
611	chr6_mcf_hap5	3534108	3534109	rs204995	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	6p21.32	NR	rs204995-A	0.736056	3E-13		0.0272612	[0.02-0.034] unit increase	Affymetrix [16577424] (imputed)	N
611	chr6_mcf_hap5	3534821	3534822	rs204994	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RACGAP1	5,360 Icelandic ancestry individuals	NA	6p21.32		rs204994-T	0.1627	4E-63		0.423554	[0.37-0.47] unit increase	Illumina [7506463] (imputed)	N
611	chr6_mcf_hap5	3535404	3535405	rs204993	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Receptor for advanced glycosylation end products levels	21,758 European ancestry individuals	9,173 individuals	6p21.32		rs204993-A	0.74	1E-48		0.1449	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
611	chr6_mcf_hap5	3535404	3535405	rs204993	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 142,336 Japanese ancestry controls	NA	6p21.32	PBX2	rs204993-?	NR	6E-9		0.0600478	[0.04-0.08] unit decrease	Illumina [19707525] (imputed)	N
611	chr6_mcf_hap5	3535404	3535405	rs204993	21804548	Hirota T	2011-07-31	Nat Genet	Genome-wide association study identifies three new susceptibility loci for adult asthma in the Japanese population.	Asthma	1,532 Japanese ancestry cases, 3,304 Japanese ancestry controls	5,639 Japanese ancestry cases, 24,608 Japanese ancestry controls	6p21.32	PBX2	rs204993-A	0.58	2E-15		1.17	[1.12-1.21]	Illumina [458847]	N
611	chr6_mcf_hap5	3537187	3537188	rs2856437	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cervical cancer	6,563 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs2856437-A	0.063203	1E-15		1.3032712	NR	Affymetrix [7846216] (imputed)	N
611	chr6_mcf_hap5	3538142	3538143	rs176095	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Atopic dermatitis	2,079 European ancestry cases, 3,867 European ancestry controls	NA	6p21.32	GPSM3	rs176095-G	NR	3E-7		1.3020833	[1.18-1.44]	Affymetrix, Illumina, Perlegen [up to 5493100] (imputed)	N
611	chr6_mcf_hap5	3538142	3538143	rs176095	23042114	Hirota T	2012-10-07	Nat Genet	Genome-wide association study identifies eight new susceptibility loci for atopic dermatitis in the Japanese population.	Atopic dermatitis	1,472 Japanese ancestry cases, 7,971 Japanese ancestry controls	1,856 Japanese ancestry cases, 7,021 Japanese ancestry controls	6p21.32	GPSM3	rs176095-T	0.81	8E-20		1.4	[1.30-1.51]	Illumina [606164]	N
612	chr6_mcf_hap5	3539779	3539780	rs3134605	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	GPSM3	rs3134605-C	NR	8E-9		0.0195758	[0.013-0.026] unit decrease	Affymetrix [319769] (imputed)	N
612	chr6_mcf_hap5	3539779	3539780	rs3134605	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	GPSM3	rs3134605-C	NR	3E-8		0.0188346	[0.012-0.025] unit decrease	Affymetrix [319769] (imputed)	N
612	chr6_mcf_hap5	3539779	3539780	rs3134605	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	GPSM3	rs3134605-C	NR	1E-8		0.0196385	[0.013-0.026] unit decrease	Affymetrix [321169] (imputed)	N
612	chr6_mcf_hap5	3539779	3539780	rs3134605	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	6p21.32	GPSM3	rs3134605-T	0.7974	7E-17		0.0033	[0.0025-0.0041] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
612	chr6_mcf_hap5	3539976	3539977	rs2269420	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Pancreatic cancer	768 White British ancestry cases, 264,559 White British ancestry controls	NA	6p21.32		rs2269420-?	NR	5E-6		550.195	[547.48-552.91]	NR [663102]	N
612	chr6_mcf_hap5	3539976	3539977	rs2269420	28031287	Sasayama D	2016-11-26	Hum Mol Genet	Genome-wide quantitative trait loci mapping of the human cerebrospinal fluid proteome.	Cerebrospinal fluid biomarker levels	133 Japanese ancestry individuals.	NA	6p21.32	NR	rs2269420-?	NR	3E-9	(Complement factor B)			Illumina [514227]	N
612	chr6_mcf_hap5	3541219	3541220	rs3132940	32534018	Liu X	2020-06-10	Brain Behav Immun	Genetic factors underlying the bidirectional relationship between autoimmune and mental disorders - findings from a Danish population-based study.	Autoimmune traits	1,383 Danish ancestry cases, 62,656 Danish ancestry controls	NA	6p21.32	NR	rs3132940-T	0.15	1E-15		0.62	[0.55-0.70]	NR [7721839] (imputed)	N
612	chr6_mcf_hap5	3541219	3541220	rs3132940	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (non-Lofgren's syndrome without extrapulmonary manifestations)	451 Swedish ancestry cases, 2,086 Swedish ancestry controls	NA	6p21.32	GPSM3, NOTCH4, AGER, MICB, NFKBIL1, LTA, NCR3, AIF1, TNXB, CREBL1, FKBPL, PRRT1	rs3132940-A	0.203	7E-6		1.531	[1.282-1.829]	Illumina [118177]	N
612	chr6_mcf_hap5	3541253	3541254	rs204990	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Scarlet fever	6,812 European ancestry cases, 113,837 European ancestry controls	NA	6p21.32	NR	rs204990-?	NR	7E-9		0.1298	[0.086-0.173] unit decrease	Illumina [at least 560000] (imputed)	N
612	chr6_mcf_hap5	3543571	3543572	rs13215567	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6p21.32	GPSM3, NOTCH4	rs13215567-A	0.049	1E-6	(IGFBP-3 )	0.03	[NR] ng/mL increase	Illumina [899892]	N
612	chr6_mcf_hap5	3545267	3545268	rs2071278	23028341	Yang X	2012-09-13	PLoS Genet	Genome-wide association study for serum complement C3 and C4 levels in healthy Chinese subjects.	Complement C3 and C4 levels	1,999 Han Chinese ancestry male individuals	1,496 Han Chinese ancestry male individuals	6p21.32	HLA-DRA	rs2071278-G	0.27	4E-72	(Serum level of C4)	0.13	[0.11-0.15] g/L decrease	Illumina [1940245] (imputed)	N
612	chr6_mcf_hap5	3546207	3546208	rs8192575	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	NOTCH4	rs8192575-G	NR	3E-14		0.0413468	[0.031-0.052] unit increase	Affymetrix [319769] (imputed)	N
612	chr6_mcf_hap5	3546207	3546208	rs8192575	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	NOTCH4	rs8192575-G	NR	1E-14		0.0418274	[0.031-0.052] unit increase	Affymetrix [319769] (imputed)	N
612	chr6_mcf_hap5	3548604	3548605	rs3134942	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.32	NOTCH4, GPSM3	rs3134942-T	0.1076459	1E-16	(EA, MHC class I polypeptide-related sequence A)	0.5791	[0.44-0.71] unit increase	Affymetrix [509946]	N
612	chr6_mcf_hap5	3550240	3550241	rs9267822	33941608	Khan A	2021-05-03	J Am Soc Nephrol	Medical Records-Based Genetic Studies of the Complement System.	Complement C4 levels	3,247 European ancestry individuals, 600 African ancestry individuals, 151 East Asian ancestry individuals	NA	6p21.32	C4	rs9267822-C	0.05	6E-7	(AA)	0.64	[0.40-0.87] unit increase	NR [NR] (imputed)	N
612	chr6_mcf_hap5	3550240	3550241	rs9267822	33941608	Khan A	2021-05-03	J Am Soc Nephrol	Medical Records-Based Genetic Studies of the Complement System.	Complement C4 levels	3,247 European ancestry individuals, 600 African ancestry individuals, 151 East Asian ancestry individuals	NA	6p21.32	C4	rs9267822-C	0.02	6E-17		0.65	[0.51-0.78] unit increase	NR [NR] (imputed)	N
612	chr6_mcf_hap5	3550240	3550241	rs9267822	33941608	Khan A	2021-05-03	J Am Soc Nephrol	Medical Records-Based Genetic Studies of the Complement System.	Complement C4 levels	3,247 European ancestry individuals, 600 African ancestry individuals, 151 East Asian ancestry individuals	NA	6p21.32	C4	rs9267822-C	0.01	7E-9	(EA)	0.61	[0.41-0.80] unit increase	NR [NR] (imputed)	N
612	chr6_mcf_hap5	3550908	3550909	rs3132935	23894747	Aberg KA	2013-02-01	JAMA Psychiatry	A comprehensive family-based replication study of schizophrenia genes.	Schizophrenia	11,185 European ancestry cases, 10,768 European ancestry controls	1,262 African American ancestry individuals, 2,740 European ancestry individuals, 2,296 Asian ancestry individuals	6p21.32	NOTCH4	rs3132935-?	0.82	5E-7	(EA)	1.25	[NR]	NR [1085772] (imputed)	N
612	chr6_mcf_hap5	3550908	3550909	rs3132935	23894747	Aberg KA	2013-02-01	JAMA Psychiatry	A comprehensive family-based replication study of schizophrenia genes.	Schizophrenia	11,185 European ancestry cases, 10,768 European ancestry controls	1,262 African American ancestry individuals, 2,740 European ancestry individuals, 2,296 Asian ancestry individuals	6p21.32	NOTCH4	rs3132935-?	0.82	3E-7		1.25	[NR]	NR [1085772] (imputed)	N
612	chr6_mcf_hap5	3551516	3551517	rs2071277	22694956	Cipriani V	2012-06-13	Hum Mol Genet	Genome-wide association study of age-related macular degeneration identifies associated variants in the TNXB-FKBPL-NOTCH4 region of chromosome 6p21.3.	Age-related macular degeneration	893 European ancestry cases, 2,199 European ancestry controls	1,411 European ancestry cases, 1,431 European ancestry controls	6p21.32	NOTCH4	rs2071277-C	0.219	2E-11		1.3	[1.20-1.41]	Illumina [2272849] (imputed)	N
612	chr6_mcf_hap5	3552826	3552827	rs3131296	19571808	Stefansson H	2009-07-01	Nature	Common variants conferring risk of schizophrenia.	Schizophrenia	2,663 European ancestry cases, 13,498 European ancestry controls	10,282 European ancestry cases, 21,093 European ancestry controls	6p21.32	MHC, NOTCH4	rs3131296-G	0.87	2E-10		1.19	[NR]	Illumina [314868]	N
612	chr6_mcf_hap5	3553071	3553072	rs9267823	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6p21.32	NOTCH4	rs9267823-C	0.252	3E-12		0.018297182	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
612	chr6_mcf_hap5	3553433	3553434	rs138753323	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.32		rs138753323-C	0.02776400000000001	7E-13		1.0961492	[1.06-1.12]	Affymetrix, Illumina [9851866] (imputed)	N
612	chr6_mcf_hap5	3553882	3553883	rs2849017	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	6p21.32	NOTCH4	rs2849017-G	0.0713240000000001	2E-10		0.027348002	[0.019-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
612	chr6_mcf_hap5	3553882	3553883	rs2849017	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	6p21.32	NOTCH4	rs2849017-G	0.071334	5E-15		0.033472747	[0.025-0.042] unit decrease	Affymetrix [93095623] (imputed)	N
612	chr6_mcf_hap5	3554791	3554792	rs3130290	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of saturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	6p21.32		rs3130290-T	0.396568	2E-14		0.0317416	[0.024-0.04] unit decrease	NR [11722792] (imputed)	N
612	chr6_mcf_hap5	3556042	3556043	rs206017	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:0_[M+H]1+/Phosphatidylethanolamine_35:0_[M+H]1+/Phosphatidate_37:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	6p21.32		rs206017-G	NR	2E-10		0.0746241	[0.052-0.098] unit decrease	Affymetrix [87696910] (imputed)	N
612	chr6_mcf_hap5	3556613	3556614	rs3132947	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Hip circumference variance	346,781 European ancestry individuals	NA	6p21.32	GPSM3	rs3132947-?	NR	5E-11				NR [5554549] (imputed)	N
612	chr6_mcf_hap5	3556613	3556614	rs3132947	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Hip circumference	346,781 European ancestry individuals	NA	6p21.32	GPSM3	rs3132947-?	NR	3E-24				NR [5554549] (imputed)	N
612	chr6_mcf_hap5	3556613	3556614	rs3132947	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Body mass index variance	346,393 European ancestry individuals	NA	6p21.32	GPSM3	rs3132947-?	NR	2E-13				NR [5554549] (imputed)	N
612	chr6_mcf_hap5	3556613	3556614	rs3132947	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Body mass index	346,393 European ancestry individuals	NA	6p21.32	GPSM3	rs3132947-?	NR	9E-15				NR [5554549] (imputed)	N
612	chr6_mcf_hap5	3559537	3559538	rs16869834	33941608	Khan A	2021-05-03	J Am Soc Nephrol	Medical Records-Based Genetic Studies of the Complement System.	Complement C4 levels	3,247 European ancestry individuals, 600 African ancestry individuals, 151 East Asian ancestry individuals	NA	6p21.32	C4	rs16869834-A	0.05	8E-20		0.44	[0.36-0.51] unit increase	NR [NR] (imputed)	N
612	chr6_mcf_hap5	3559537	3559538	rs16869834	33941608	Khan A	2021-05-03	J Am Soc Nephrol	Medical Records-Based Genetic Studies of the Complement System.	Complement C4 levels	3,247 European ancestry individuals, 600 African ancestry individuals, 151 East Asian ancestry individuals	NA	6p21.32	C4	rs16869834-A	0.05	2E-18	(EA)	0.47	[0.37-0.56] unit increase	NR [NR] (imputed)	N
612	chr6_mcf_hap5	3559537	3559538	rs16869834	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs16869834-G	0.047	5E-27	(Complement C4, C4A.C4B.4481.34.2)	0.62	[0.5-0.74] unit decrease	Affymetrix [10572788] (imputed)	N
612	chr6_mcf_hap5	3559724	3559725	rs2071286	25030430	Zignego AL	2014-07-17	Genes Immun	Genome-wide association study of hepatitis C virus- and cryoglobulin-related vasculitis.	Mixed cryoglobulinemia vasculitis in chronic hepatitis C infection	356 European ancestry cases, 447 European ancestry controls	92 European ancestry cases, 179 European ancestry controls	6p21.32	NOTCH4	rs2071286-?	0.29	2E-8		2.15	[NR]	Illumina [899641]	N
612	chr6_mcf_hap5	3559974	3559975	rs3131294	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	NOTCH4	rs3131294-A	NR	1E-10		0.025777	[0.018-0.034] unit increase	Affymetrix [321016] (imputed)	N
612	chr6_mcf_hap5	3560069	3560070	rs206019	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	NOTCH4	rs206019-T	NR	5E-13		0.0300963	[0.022-0.038] unit increase	Affymetrix [319769] (imputed)	N
612	chr6_mcf_hap5	3560069	3560070	rs206019	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	NOTCH4	rs206019-T	NR	2E-8		0.0236482	[0.015-0.032] unit increase	Affymetrix [321114] (imputed)	N
612	chr6_mcf_hap5	3560069	3560070	rs206019	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	NOTCH4	rs206019-T	NR	2E-9		0.0253993	[0.017-0.034] unit increase	Affymetrix [321169] (imputed)	N
612	chr6_mcf_hap5	3561010	3561011	rs206016	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	NOTCH4	rs206016-A	NR	2E-13		0.030587	[0.022-0.039] unit increase	Affymetrix [319769] (imputed)	N
612	chr6_mcf_hap5	3561345	3561346	rs41270472	28334935	Raffield LM	2017-05-15	Hum Mol Genet	Genome-wide association study of iron traits and relation to diabetes in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL): potential genomic intersection of iron and glucose regulation?	Iron status biomarkers (iron levels)	12,580 Hispanic/Latino individuals	NA	6p21.32	NOTCH4	rs41270472-A	NR	8E-7		0.286	[0.17-0.4] unit decrease	Illumina [27700000] (imputed)	N
612	chr6_mcf_hap5	3564194	3564195	rs404860	21804548	Hirota T	2011-07-31	Nat Genet	Genome-wide association study identifies three new susceptibility loci for adult asthma in the Japanese population.	Asthma	1,532 Japanese ancestry cases, 3,304 Japanese ancestry controls	5,639 Japanese ancestry cases, 24,608 Japanese ancestry controls	6p21.32	NOTCH4	rs404860-A	0.50	4E-23		1.21	[1.16-1.25]	Illumina [458847]	N
612	chr6_mcf_hap5	3564554	3564555	rs3134798	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C4A;C4B	5,362 Icelandic ancestry individuals	NA	6p21.32		rs3134798-G	0.3666	1E-47		0.277923	[0.24-0.32] unit increase	Illumina [7506463] (imputed)	N
612	chr6_mcf_hap5	3566094	3566095	rs438475	26503763	Song J	2015-10-27	Mol Psychiatry	Genome-wide association study identifies SESTD1 as a novel risk gene for lithium-responsive bipolar disorder.	Objective response to lithium treatment in bipolar disorder	323 European ancestry responder cases, 853 European ancestry non-responder cases	NA	6p21.32	NOTCH4	rs438475-A	0.12	2E-6		2.04	[NR]	Affymetrix, Illumina [> 8000000] (imputed)	N
612	chr6_mcf_hap5	3566721	3566722	rs2256594	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (glucocorticoids)	13,102 East Asian ancestry cases, 165,624 East Asian ancestry controls	NA	6p21.32		rs2256594-G	0.381444507	1E-9		0.081218176	[0.055-0.107] unit decrease	Illumina [13429980] (imputed)	N
612	chr6_mcf_hap5	3567486	3567487	rs8192589	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	NOTCH4	rs8192589-T	NR	7E-14		0.0321787	[0.024-0.041] unit increase	Affymetrix [323123] (imputed)	N
612	chr6_mcf_hap5	3567571	3567572	rs431722	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Joint mobility (Beighton score)	64,143 European ancestry individuals	NA	6p21.32	NOTCH4	rs431722-?	NR	2E-12		0.08	[0.102-0.058] unit decrease	Illumina [12039492] (imputed)	N
612	chr6_mcf_hap5	3567632	3567633	rs8192590	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	6p21.32	PRRC2A	rs8192590-C	0.8421	1E-8	(S1P d16:1)	0.1004	[0.066-0.135] unit increase	Illumina [~ 47000000] (imputed)	N
612	chr6_mcf_hap5	3568232	3568233	rs422951	32771030	Tangtanatakul P	2020-08-08	Arthritis Res Ther	Meta-analysis of genome-wide association study identifies FBN2 as a novel locus associated with systemic lupus erythematosus in Thai population.	Systemic lupus erythematosus	487 Thai cases, 1,606 Thai controls	405 Thai cases, 1,590 Thai controls	6p21.32	NOTCH4	rs422951-G	0.36	7E-7		1.3345	[NR]	Illumina [421909] (imputed)	N
612	chr6_mcf_hap5	3568232	3568233	rs422951	25802187	Jiang DK	2015-04-28	Hepatology	Genetic variants in five novel loci including CFB and CD40 predispose to chronic hepatitis B.	Chronic hepatitis B infection	2,514 Chinese ancestry cases, 1,130 Chinese ancestry controls	6,600 Chinese ancestry cases, 8,127 Chinese ancestry controls	6p21.32	NOTCH4	rs422951-G	0.81	5E-16		1.27	[1.20-1.35]	Illumina [3680900] (imputed)	N
612	chr6_mcf_hap5	3568489	3568490	rs520692	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling worry	372,869 European ancestry individuals	NA	6p21.32	C4A	rs520692-T	0.289258	2E-10		6.342	unit decrease	NR [10847151] (imputed)	N
612	chr6_mcf_hap5	3568672	3568673	rs8192585	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		NOTCH4	rs8192585-?	NR	3E-10	(male)	2.46406	[NR] unit decrease	Affymetrix [NR] (imputed)	N
612	chr6_mcf_hap5	3568672	3568673	rs8192585	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		NOTCH4	rs8192585-?	NR	2E-15		2.03144	[NR] unit decrease	Affymetrix [NR] (imputed)	N
612	chr6_mcf_hap5	3568881	3568882	rs415929	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.32		rs415929-T	0.711	3E-23				Affymetrix [10369434] (imputed)	N
612	chr6_mcf_hap5	3568881	3568882	rs415929	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	6p21.32	C4A	rs415929-T	0.290043	4E-8		5.51	z score decrease	NR [10847151] (imputed)	N
612	chr6_mcf_hap5	3569874	3569875	rs3132946	23583980	Fingerlin TE	2013-04-14	Nat Genet	Genome-wide association study identifies multiple susceptibility loci for pulmonary fibrosis.	Interstitial lung disease	1,161 European ancestry cases, 4,683 European ancestry controls	876 European ancestry cases, 1,890 European ancestry controls	6p21.32	NR	rs3132946-A	0.12	8E-6		1.38	[1.21-1.57]	Illumina [439828]	N
612	chr6_mcf_hap5	3570252	3570253	rs443198	21779181	Gorlova O	2011-07-14	PLoS Genet	Identification of novel genetic markers associated with clinical phenotypes of systemic sclerosis through a genome-wide association strategy.	Systemic sclerosis	2,296 European ancestry cases, 5,172 European ancestry controls	3,175 European ancestry cases, 4,210 European ancestry controls	6p21.32	NOTCH4	rs443198-?	0.63	9E-21	(ACA positive)	1.82	[1.59-2.04]	Illumina [NR] (imputed)	N
612	chr6_mcf_hap5	3570466	3570467	rs3134931	23620142	Reiner AP	2013-04-24	Hum Mol Genet	Genome-wide and gene-centric analyses of circulating myeloperoxidase levels in the charge and care consortia.	Circulating myeloperoxidase levels (serum)	9,305 European ancestry individuals		6p21.32	HLA, NOTCH4, C2	rs3134931-T	0.73	1E-8		0.05	[0.030-0.070] unit decrease	Affymetrix, Illumina [2397181]	N
612	chr6_mcf_hap5	3570887	3570888	rs434841	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	NOTCH4	rs434841-A	NR	4E-8		0.0169017	[0.011-0.023] unit decrease	Affymetrix [319769] (imputed)	N
612	chr6_mcf_hap5	3571009	3571010	rs149361718	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.32	NR	rs149361718-A	0.01394	1E-10	(KRT10)	0.7834	NR unit increase	Illumina [1671387] (imputed)	N
612	chr6_mcf_hap5	3571185	3571186	rs3830041	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	150,068 East Asian ancestry individuals	NA	6p21.32		rs3830041-T	0.185228	9E-25		0.0457917	[0.037-0.055] unit increase	Illumina [13478956] (imputed)	N
612	chr6_mcf_hap5	3571185	3571186	rs3830041	31826910	Lu Y	2019-12-11	Cancer Epidemiol Biomarkers Prev	Identification of novel loci and new risk variant in known loci for colorectal cancer risk in East Asians.	Colorectal cancer	23,572 East Asian ancestry cases, 48,700 East Asian ancestry controls	58,131 European ancestry cases, 67,347 European ancestry controls	6p21.32		rs3830041-T	0.14	4E-9	(East Asian)	1.15	[1.10-1.21]	Affymetrix, Illumina [up to 47000000] (imputed)	N
612	chr6_mcf_hap5	3571185	3571186	rs3830041	30529582	Lu Y	2018-12-06	Gastroenterology	Large-scale Genome-wide Association Study of East Asians Identifies Loci Associated With Risk for Colorectal Cancer.	Colorectal cancer	22,775 East Asian ancestry cases, 47,731 East Asian ancestry controls	NA	6p21.32	NOTCH4	rs3830041-T	0.14	2E-8		1.16	[1.10-1.21]	Affymetrix, Illumina [up to 10700000] (imputed)	N
612	chr6_mcf_hap5	3571303	3571304	rs375244	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p21.32	NOTCH4	rs375244-A	0.28	3E-6	(Turkish)	1.57	[1.30-1.90]	Illumina [up to 547389]	N
612	chr6_mcf_hap5	3571576	3571577	rs367398	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p21.32		rs367398-G	0.694	2E-11				Affymetrix [10369434] (imputed)	N
612	chr6_mcf_hap5	3572063	3572064	rs16869875	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	Systemic lupus erythematosus	1,639 East Asian ancestry cases, 2,410 East Asian ancestry controls	NA			rs16869875-T	NR	2E-16		0.4377	[0.33-0.54] unit increase	Illumina [NR] (imputed)	N
612	chr6_mcf_hap5	3572177	3572178	rs3096702	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	6p21.32	NR	rs3096702-A	0.38	1E-11		1.06	[1.04-1.07]	Illumina [20370935] (imputed)	N
612	chr6_mcf_hap5	3572177	3572178	rs3096702	23535732	Eeles RA	2013-04-01	Nat Genet	Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array.	Prostate cancer	11,085 European ancestry cases, 11,463 European ancestry controls	19,662 European ancestry cases, 19,715 European ancestry controls	6p21.32	CYP21A2, DOM3Z, FKBPL, HLA-DRB6, HCG23, LOC10029, ATF6B, LOC100293534, AGER, LOC100507547, MIR1236, PPT2, PPT2-EGF, HLA-DRA, PPT2-EGFL8, RNF5, RNF5P1, CFB, RDBP, TNXA, TNXB, HLA-DQB1, NOTCH4, SKIV2L, STK19, GPSM3, PBX2, LOC10050, EGFL8, AGPAT1, C2, C4A, PRRT1, BTNL2, C4B, HLA-DRB5, C6orf10, HLA-DRB1, CYP21A1P, HLA-DQA1	rs3096702-A	0.4	5E-9		1.07	[1.04-1.10]	Illumina [~ 2600000] (imputed)	N
612	chr6_mcf_hap5	3574441	3574442	rs17208153	33941608	Khan A	2021-05-03	J Am Soc Nephrol	Medical Records-Based Genetic Studies of the Complement System.	Complement C4 levels	3,247 European ancestry individuals, 600 African ancestry individuals, 151 East Asian ancestry individuals	NA	6p21.32	C4	rs17208153-C	0.11	2E-11		0.24	[0.18-0.30] unit increase	NR [NR] (imputed)	N
612	chr6_mcf_hap5	3574441	3574442	rs17208153	33941608	Khan A	2021-05-03	J Am Soc Nephrol	Medical Records-Based Genetic Studies of the Complement System.	Complement C4 levels	3,247 European ancestry individuals, 600 African ancestry individuals, 151 East Asian ancestry individuals	NA	6p21.32	C4	rs17208153-C	0.08	7E-11	(EA)	0.28	[0.20-0.35] unit increase	NR [NR] (imputed)	N
612	chr6_mcf_hap5	3575097	3575098	rs9267853	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p21.32	NR	rs9267853-?	NR	3E-25		0.131	[0.11-0.16] unit increase	Illumina [at least 560000] (imputed)	N
612	chr6_mcf_hap5	3577066	3577067	rs3132948	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Bronchiectasis	2,888 European ancestry cases, 440,263 European ancestry controls, 241 East Asian ancestry cases, 161,803 East Asian ancestry controls	NA	6p21.32		rs3132948-G	NR	7E-9		0.1526	[0.1-0.2] unit decrease	Affymetrix, Illumina [25839694] (imputed)	N
612	chr6_mcf_hap5	3578991	3578992	rs377763	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Prostate cancer	7,438 White British ancestry cases, 118,206 White British ancestry controls	NA	6p21.32		rs377763-?	NR	9E-6		0.908716	[0.87-0.95]	NR [680312]	N
612	chr6_mcf_hap5	3578991	3578992	rs377763	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling nervous	373,121 European ancestry individuals	NA	6p21.32	NR	rs377763-A	0.216145	1E-10		6.43	z score decrease	NR [10847151] (imputed)	N
612	chr6_mcf_hap5	3581098	3581099	rs6941515	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on myeloid Dendritic Cell	2,872 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs6941515-T	0.5683199999999999	8E-12		0.2226	[0.16-0.29] unit decrease	Illumina [17926605] (imputed)	N
612	chr6_mcf_hap5	3581373	3581374	rs3096692	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	NOTCH4	rs3096692-G	NR	3E-12		0.0293978	[0.021-0.038] unit decrease	Affymetrix [323858] (imputed)	N
612	chr6_mcf_hap5	3581373	3581374	rs3096692	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	NOTCH4	rs3096692-G	NR	2E-10		0.0269591	[0.019-0.035] unit decrease	Affymetrix [127266] (imputed)	N
612	chr6_mcf_hap5	3581437	3581438	rs443863	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.32	NR	rs443863-?	NR	6E-9				Affymetrix [~ 8270000] (imputed)	N
612	chr6_mcf_hap5	3584665	3584666	rs9279532	31577861	Dai J	2019-10-31	Int J Cancer	Genome-wide association study of INDELs identified four novel susceptibility loci associated with lung cancer risk.	Lung cancer	20,871 European ancestry cases, 15,971 European ancestry controls, 2,331 Chinese ancestry cases, 3,077 Chinese ancestry controls	NA	6p21.32	NOTCH4	rs9279532-D	0.12	3E-7		1.11	[1.07-0.94]	Illumina [484196]	N
612	chr6_mcf_hap5	3584727	3584728	rs28732180	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p21.32	NR	rs28732180-?	NR	1E-15		0.1765	[0.13-0.22] unit increase	Illumina [at least 560000] (imputed)	N
612	chr6_mcf_hap5	3584890	3584891	rs549182	24837172	Juyal G	2014-05-16	Gut	Genome-wide association scan in north Indians reveals three novel HLA-independent risk loci for ulcerative colitis.	Ulcerative colitis	603 North Indian ancestry cases, 622 North Indian ancestry controls	733 North Indian ancestry cases, 1,148 North Indian ancestry controls	6p21.32	NOTCH4	rs549182-A	0.11	8E-10		1.59	[1.37-1.85]	Illumina [480391]	N
612	chr6_mcf_hap5	3584955	3584956	rs9267911	23266558	Yamazaki K	2012-12-21	Gastroenterology	A genome-wide association study identifies 2 susceptibility Loci for Crohn's disease in a Japanese population.	Crohn's disease	372 Japanese ancestry cases,3,389 Japanese ancestry controls	Up to 1,151 Japanese ancestry cases, up to 15,800 Japanese ancestry controls	6p21.32	PBX2, NOTCH4	rs9267911-T	0.479	3E-7		1.5	[1.29-1.76]	Illumina [4929034] (imputed)	N
612	chr6_mcf_hap5	3586333	3586334	rs3134938	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p21.32	NOTCH4	rs3134938-C	0.832	8E-7		0.076	[0.047-0.105] unit decrease	Affymetrix, Illumina [7374092] (imputed)	N
612	chr6_mcf_hap5	3586384	3586385	rs3134937	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	NOTCH4	rs3134937-T	NR	7E-9		0.0212317	[0.014-0.028] unit decrease	Affymetrix [323858] (imputed)	N
612	chr6_mcf_hap5	3587026	3587027	rs3130304	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	NOTCH4	rs3130304-A	NR	4E-8		0.0203511	[0.013-0.028] unit increase	Affymetrix [323123] (imputed)	N
612	chr6_mcf_hap5	3587238	3587239	rs416352	30294719	Zeng Y	2018-08-24	JAMA Netw Open	Sex Differences in Genetic Associations With Longevity.	Longevity	564 Han Chinese ancestry male centenarian cases, 1,614 Han Chinese ancestry female centenarian cases, 773 Han Chinese ancestry male middle-aged controls, 1,526 Han Chinese ancestry female middle-aged controls	NA	6p21.32	NOTCH4	rs416352-?	0.51	8E-6	(female)	1.261	[1.14-1.40]	Illumina [5595657] (imputed)	N
612	chr6_mcf_hap5	3588169	3588170	rs424232	23936387	Ostensson M	2013-08-02	PLoS One	A possible mechanism behind autoimmune disorders discovered by genome-wide linkage and association analysis in celiac disease.	Celiac disease	206 European ancestry trios	NA	6p21.32	HLA	rs424232-C		5E-21				Illumina [944512] (imputed)	N
612	chr6_mcf_hap5	3589090	3589091	rs186298790	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	6p21.32	NR	rs186298790-?	NR	4E-11	(MIC-A)	3.61094	[2.54-4.68] unit increase	Illumina [11901634] (imputed)	N
612	chr6_mcf_hap5	3589171	3589172	rs570559246	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Treatment or medication use - sulfasalazine (UKB data field 20003_1140909702)	866 European ancestry cases, 455,410 European ancestry controls	NA	6p21.32		rs570559246-C	0.003586	7E-10		3.33	[2.27-4.39] unit increase	NR [11842647] (imputed)	N
612	chr6_mcf_hap5	3589296	3589297	rs380911	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.32	Intergenic	rs380911-?		9E-6		1.04	[1.02-1.06]	Illumina [7645193] (imputed)	N
612	chr6_mcf_hap5	3589296	3589297	rs380911	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.32	Intergenic	rs380911-?		3E-6		1.51	[1.27-1.80]	Illumina [7645193] (imputed)	N
612	chr6_mcf_hap5	3589617	3589619	rs28993469	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	6p21.32		rs28993469-C	0.261024	4E-12		0.019322034	[0.014-0.025] unit increase	Affymetrix [93095623] (imputed)	N
612	chr6_mcf_hap5	3589706	3589707	rs507778	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	6p21.32	intergenic	rs507778-T	0.3256	1E-24		0.03915988	[0.032-0.047] unit decrease	Affymetrix [~ 2500000] (imputed)	N
612	chr6_mcf_hap5	3589706	3589707	rs507778	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	6p21.32	intergenic	rs507778-T	0.3257	2E-29		0.04307319	[0.036-0.051] unit decrease	Affymetrix [~ 2500000] (imputed)	N
612	chr6_mcf_hap5	3590196	3590197	rs28732181	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Strep throat	52,487 European ancestry cases, 22,017 European ancestry controls	NA	6p21.32	NR	rs28732181-?	NR	6E-6		0.0381	[0.022-0.055] unit decrease	Illumina [at least 560000] (imputed)	N
612	chr6_mcf_hap5	3590644	3590645	rs419132	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	Triglycerides	up to 62,166 European ancestry individuals	NA	6p21.32	HLA-area	rs419132-G	0.2	5E-12		0.056	[0.04-0.072] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
612	chr6_mcf_hap5	3590930	3590931	rs412657	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6p21.32		rs412657-G	0.377896	3E-19		0.021442138	[0.017-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
612	chr6_mcf_hap5	3591162	3591163	rs411326	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	6p21.32		rs411326-C	0.728	4E-13				Affymetrix [10369434] (imputed)	N
612	chr6_mcf_hap5	3592500	3592501	rs9267951	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.32		rs9267951-C	0.729	9E-29				Affymetrix [10369434] (imputed)	N
612	chr6_mcf_hap5	3592500	3592501	rs9267951	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p21.32		rs9267951-C	0.729	5E-17				Affymetrix [10369434] (imputed)	N
612	chr6_mcf_hap5	3592539	3592540	rs9267952	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.32		rs9267952-G	0.573	6E-23				Affymetrix [10369434] (imputed)	N
612	chr6_mcf_hap5	3592539	3592540	rs9267952	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	XXbac-BPG154L12.4	rs9267952-A	NR	5E-14		0.0214967	[0.016-0.027] unit increase	Affymetrix [319769] (imputed)	N
612	chr6_mcf_hap5	3592539	3592540	rs9267952	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	XXbac-BPG154L12.4	rs9267952-A	NR	2E-13		0.0209537	[0.015-0.027] unit increase	Affymetrix [319769] (imputed)	N
612	chr6_mcf_hap5	3592539	3592540	rs9267952	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	XXbac-BPG154L12.4	rs9267952-A	NR	5E-12		0.0199663	[0.014-0.026] unit increase	Affymetrix [321169] (imputed)	N
612	chr6_mcf_hap5	3592551	3592551	rs35161164	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	XXbac-BPG154L12.4	rs35161164-CG	NR	1E-11		0.0195502	[0.014-0.025] unit decrease	Affymetrix [321016] (imputed)	N
612	chr6_mcf_hap5	3592551	3592551	rs35161164	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	XXbac-BPG154L12.4	rs35161164-CG	NR	5E-15		0.0245369	[0.018-0.031] unit decrease	Affymetrix [323123] (imputed)	N
612	chr6_mcf_hap5	3592703	3592704	rs10456404	33119750	Vergara C	2020-10-29	J Infect Dis	A multi-ancestry sex stratified genome-wide association study of spontaneous clearance of hepatitis C virus.	Hepatitis C (spontaneous viral clearance)	239 African ancestry male cases, 1,184 African ancestry male controls, 206 African ancestry female cases, 572 African ancestry female controls, 489 European ancestry male cases, 703 European ancestry male controls, 212 European ancestry female cases, 332 European ancestry female controls, 91 Hispanic male cases, 197 Hispanic male controls, 82 Hispanic female cases, 116 Hispanic female controls	NA	6p21.32	NR	rs10456404-C	0.13	2E-7	(female)	1.89	[NR]	Illumina [5730693] (imputed)	N
612	chr6_mcf_hap5	3592898	3592899	rs9267954	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	XXbac-BPG154L12.4	rs9267954-T	NR	2E-12		0.022421	[0.016-0.029] unit increase	Affymetrix [319769] (imputed)	N
612	chr6_mcf_hap5	3592898	3592899	rs9267954	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	XXbac-BPG154L12.4	rs9267954-T	NR	3E-12		0.0221835	[0.016-0.028] unit increase	Affymetrix [319769] (imputed)	N
612	chr6_mcf_hap5	3592898	3592899	rs9267954	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	XXbac-BPG154L12.4	rs9267954-T	NR	2E-11		0.0234019	[0.017-0.03] unit decrease	Affymetrix [323123] (imputed)	N
612	chr6_mcf_hap5	3592898	3592899	rs9267954	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	XXbac-BPG154L12.4	rs9267954-T	NR	1E-11		0.0218043	[0.015-0.028] unit increase	Affymetrix [321169] (imputed)	N
612	chr6_mcf_hap5	3593056	3593057	rs454748	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	XXbac-BPG154L12.4	rs454748-A	NR	3E-11		0.0188397	[0.013-0.024] unit decrease	Affymetrix [321016] (imputed)	N
612	chr6_mcf_hap5	3593056	3593057	rs454748	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	XXbac-BPG154L12.4	rs454748-A	NR	5E-15		0.0242475	[0.018-0.03] unit decrease	Affymetrix [323123] (imputed)	N
612	chr6_mcf_hap5	3596938	3596939	rs6936204	25096241	Keller MF	2014-08-05	Hum Mol Genet	Trans-ethnic meta-analysis of white blood cell phenotypes.	Neutrophil count	9,802 Japanese ancestry individuals, 16,550 European ancestry individuals, 7,391 African American individuals	NA	6p21.32	AK123889	rs6936204-C	0.585	6E-6	(EA)	0.02	[0.012-0.028] unit increase	Illumina [NR] (imputed)	N
612	chr6_mcf_hap5	3596938	3596939	rs6936204	25096241	Keller MF	2014-08-05	Hum Mol Genet	Trans-ethnic meta-analysis of white blood cell phenotypes.	Neutrophil count	9,802 Japanese ancestry individuals, 16,550 European ancestry individuals, 7,391 African American individuals	NA	6p21.32	AK123889	rs6936204-?	NR	3E-8		0.0196	[0.013-0.026] unit decrease	Illumina [NR] (imputed)	N
612	chr6_mcf_hap5	3597078	3597079	rs9267972	24925725	Chung SA	2014-06-12	J Am Soc Nephrol	Lupus nephritis susceptibility loci in women with systemic lupus erythematosus.	Lupus nephritis in systemic lupus erythematosus	588 European ancestry cases, 1,412 European ancestry controls	NA	6p21.32	C6orf10, NOTCh4	rs9267972-A	NR	2E-6	(Dominant)	1.85	[1.46,2.33]	Affymetrix, Illumina [1621689] (imputed)	N
612	chr6_mcf_hap5	3597259	3597260	rs3115574	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p21.32	NR	rs3115574-?	NR	2E-13		0.0942	[0.069-0.119] unit increase	Illumina [at least 560000] (imputed)	N
612	chr6_mcf_hap5	3597692	3597693	rs2894240	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	XXbac-BPG154L12.4	rs2894240-A	NR	5E-12		0.0197637	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
612	chr6_mcf_hap5	3597692	3597693	rs2894240	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	XXbac-BPG154L12.4	rs2894240-A	NR	2E-11		0.0191638	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
612	chr6_mcf_hap5	3597692	3597693	rs2894240	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	XXbac-BPG154L12.4	rs2894240-A	NR	4E-11		0.0191969	[0.014-0.025] unit increase	Affymetrix [321169] (imputed)	N
612	chr6_mcf_hap5	3598689	3598690	rs3115573	20595679	Feehally J	2010-07-01	J Am Soc Nephrol	HLA has strongest association with IgA nephropathy in genome-wide analysis.	Nephropathy	187 European ancestry child cases, 244 European ancestry cases, 4,980 European ancestry controls	NA	6p21.32	intergenic	rs3115573-?	NR	1E-9		1.62	[1.39-1.90]	Illumina [286200]	N
612	chr6_mcf_hap5	3598835	3598836	rs9296015	21779181	Gorlova O	2011-07-14	PLoS Genet	Identification of novel genetic markers associated with clinical phenotypes of systemic sclerosis through a genome-wide association strategy.	Systemic sclerosis	2,296 European ancestry cases, 5,172 European ancestry controls	3,175 European ancestry cases, 4,210 European ancestry controls	6p21.32	NOTCH4	rs9296015-?	0.81	1E-8	(ATA positive)	1.85	[1.49-2.27]	Illumina [NR] (imputed)	N
612	chr6_mcf_hap5	3598835	3598836	rs9296015	21505073	Terao C	2011-04-19	Hum Mol Genet	The human AIRE gene at chromosome 21q22 is a genetic determinant for the predisposition to rheumatoid arthritis in Japanese population.	Rheumatoid arthritis	1,247 Japanese ancestry cases, 1,486 Japanese ancestry controls	4,168 Japanese ancestry cases, 5,003 Japanese ancestry controls	6p21.32	HLA locus	rs9296015-?	NR	2E-38				Illumina [241523]	N
612	chr6_mcf_hap5	3601430	3601431	rs9267995	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	XXbac-BPG154L12.4	rs9267995-G	NR	2E-9		0.0171285	[0.012-0.023] unit decrease	Affymetrix [321114] (imputed)	N
612	chr6_mcf_hap5	3601430	3601431	rs9267995	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	XXbac-BPG154L12.4	rs9267995-G	NR	1E-21		0.027192	[0.022-0.033] unit decrease	Affymetrix [321169] (imputed)	N
612	chr6_mcf_hap5	3601430	3601431	rs9267995	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	6p21.32	NR	rs9267995-A	0.548939	3E-14		0.0512585	[0.038-0.065] unit decrease	Affymetrix [17914406] (imputed)	N
612	chr6_mcf_hap5	3601446	3601447	rs9296018	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.32		rs9296018-A	0.81	6E-10				Affymetrix [10369434] (imputed)	N
612	chr6_mcf_hap5	3602422	3602423	rs139197261	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6p21.32	XXbac-BPG154L12.4	rs139197261-G	0.015037	2E-10		0.05895812	[0.041-0.077] unit decrease	Affymetrix [93095623] (imputed)	N
612	chr6_mcf_hap5	3659543	3659544	rs6934429	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	C6orf10	rs6934429-T	NR	9E-14		0.0248579	[0.018-0.031] unit decrease	Affymetrix [319769] (imputed)	N
612	chr6_mcf_hap5	3659543	3659544	rs6934429	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs6934429-T	NR	7E-13		0.0239747	[0.017-0.031] unit decrease	Affymetrix [319769] (imputed)	N
612	chr6_mcf_hap5	3660512	3660513	rs9268208	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	C6orf10	rs9268208-C	NR	8E-9		0.0246281	[0.016-0.033] unit increase	Affymetrix [321016] (imputed)	N
612	chr6_mcf_hap5	3660937	3660938	rs74209703	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.32	NR	rs74209703-?	NR	5E-10				Affymetrix [~ 8270000] (imputed)	N
612	chr6_mcf_hap5	3661333	3661334	rs28366179	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	6p21.32	C6orf10	rs28366179-A	0.1646	3E-21		0.04564547	[0.036-0.055] unit increase	Affymetrix [~ 2500000] (imputed)	N
612	chr6_mcf_hap5	3661989	3661990	rs2395141	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs2395141-?	NR	3E-10				Affymetrix [~ 8270000] (imputed)	N
612	chr6_mcf_hap5	3662754	3662755	rs6910071	20453842	Stahl EA	2010-05-09	Nat Genet	Genome-wide association study meta-analysis identifies seven new rheumatoid arthritis risk loci.	Rheumatoid arthritis	5,539 European ancestry cases, 20,169 European ancestry controls	6,768 European ancestry cases, 8,806 European ancestry controls	6p21.32	HLA-DRB1	rs6910071-G	0.22	1E-299		2.88	[2.73-3.03]	Affymetrix, Illumina [~ 2716259] (imputed)	N
612	chr6_mcf_hap5	3666585	3666586	rs2022542	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	6p21.32	C6orf10	rs2022542-G	0.0582	2E-52		0.1169749	[0.1-0.13] unit increase	Affymetrix [~ 2500000] (imputed)	N
612	chr6_mcf_hap5	3667228	3667229	rs2746115	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	6p21.32	NR	rs2746115-?	NR	8E-9				Affymetrix [~ 8270000] (imputed)	N
613	chr6_mcf_hap5	3673484	3673485	rs2395143	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	C6orf10, HNRNPA1P2	rs2395143-G	NR	2E-10		0.0215226	[0.015-0.028] unit decrease	Affymetrix [323123] (imputed)	N
613	chr6_mcf_hap5	3675353	3675356	rs759777208	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	C6orf10	rs759777208-CT	NR	3E-12		0.0275667	[0.02-0.035] unit decrease	Affymetrix [323858] (imputed)	N
613	chr6_mcf_hap5	3675353	3675356	rs759777208	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	C6orf10	rs759777208-CT	NR	2E-11		0.0265095	[0.019-0.034] unit decrease	Affymetrix [127266] (imputed)	N
613	chr6_mcf_hap5	3675353	3675356	rs759777208	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	C6orf10	rs759777208-CT	NR	4E-8		0.0212618	[0.014-0.029] unit increase	Affymetrix [323123] (imputed)	N
613	chr6_mcf_hap5	3675353	3675356	rs759777208	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p21.32	C6orf10	rs759777208-CT	NR	2E-8		0.0218536	[0.014-0.03] unit decrease	Affymetrix [323858] (imputed)	N
613	chr6_mcf_hap5	3675672	3675673	rs9268249	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	C6orf10	rs9268249-A	NR	5E-8		0.015398	[0.0099-0.0209] unit decrease	Affymetrix [321016] (imputed)	N
613	chr6_mcf_hap5	3675672	3675673	rs9268249	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	C6orf10	rs9268249-A	NR	7E-15		0.0239145	[0.018-0.03] unit decrease	Affymetrix [323123] (imputed)	N
613	chr6_mcf_hap5	3675802	3675803	rs6913664	34785669	Grosche S	2021-11-16	Nat Commun	Rare variant analysis in eczema identifies exonic variants in DUSP1, NOTCH4 and SLC9A4.	Eczema	20,016 European ancestry cases, 380,433 European ancestry controls	NA	6p21.32		rs6913664-T	0.4549	1E-15		0.91		Affymetrix, Illumina [9397031] (imputed)	N
613	chr6_mcf_hap5	3675806	3675807	rs9268251	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	C6orf10	rs9268251-A	NR	7E-11		0.0216525	[0.015-0.028] unit decrease	Affymetrix [319769] (imputed)	N
613	chr6_mcf_hap5	3675806	3675807	rs9268251	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs9268251-A	NR	3E-10		0.0208763	[0.014-0.027] unit decrease	Affymetrix [319769] (imputed)	N
613	chr6_mcf_hap5	3675806	3675807	rs9268251	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs9268251-A	NR	5E-10		0.0208582	[0.014-0.027] unit decrease	Affymetrix [321169] (imputed)	N
613	chr6_mcf_hap5	3679372	3679373	rs145396511	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs145396511-T	0.989	5E-9	(conditional)	1.574	[1.42-1.72]	Illumina [11270530] (imputed)	N
613	chr6_mcf_hap5	3680723	3680724	rs3129960	33106546	Johnson TA	2020-10-26	J Hum Genet	Association of an IGHV3-66 gene variant with Kawasaki disease.	Kawasaki disease	1,276 East Asian ancestry cases, 5,086 East Asian ancestry controls	2,152 East Asian ancestry cases, 2,751 East Asian ancestry controls	6p21.32	C6orf10, LOC101929163	rs3129960-G	NR	7E-13		0.73	[0.67-0.80]	Affymetrix, Illumina [6265045] (imputed)	N
613	chr6_mcf_hap5	3681340	3681341	rs115378818	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.32	C6orf10	rs115378818-T	0.0143760000000001	3E-49		0.16935384	[0.15-0.19] unit decrease	Affymetrix [93095623] (imputed)	N
613	chr6_mcf_hap5	3682295	3682296	rs1265757	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p21.32	C6orf10	rs1265757-A	0.343	1E-33				Illumina [118177]	N
613	chr6_mcf_hap5	3685150	3685151	rs78546106	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs78546106-?	NR	6E-11				Affymetrix [~ 8270000] (imputed)	N
613	chr6_mcf_hap5	3685570	3685571	rs926592	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p21.32	TSBP1	rs926592-C	0.658	6E-6		0.059	[0.034-0.084] unit increase	Affymetrix, Illumina [7374092] (imputed)	N
613	chr6_mcf_hap5	3685891	3685892	rs3129900	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (multivariate analysis)	477,968 European ancestry individuals	NA	6p21.32	C6orf10	rs3129900-G	0.171	7E-17		0.05	[0.038-0.062] unit decrease	NR [NR] (imputed)	N
613	chr6_mcf_hap5	3685891	3685892	rs3129900	20639878	Singer JB	2010-07-18	Nat Genet	A genome-wide study identifies HLA alleles associated with lumiracoxib-related liver injury.	Lumiracoxib-related liver injury	31 European ancestry cases, 3 Hispanic cases, 1 case, 176 European, Hispanic and other ancestry controls	79 European ancestry cases, 16 Hispanic ancestry cases, 1 case, 405 European, Hispanic and other ancestry controls	6p21.32	HLA-DRB1	rs3129900-?	0.105	7E-25		7.5	[5.0-11.3]	Affymetrix [682386]	N
613	chr6_mcf_hap5	3686002	3686003	rs9368716	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	C6orf10	rs9368716-A	NR	4E-17		0.0234977	[0.018-0.029] unit increase	Affymetrix [319769] (imputed)	N
613	chr6_mcf_hap5	3686002	3686003	rs9368716	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs9368716-A	NR	1E-16		0.0231755	[0.018-0.029] unit increase	Affymetrix [319769] (imputed)	N
613	chr6_mcf_hap5	3686002	3686003	rs9368716	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs9368716-A	NR	4E-9		0.0166452	[0.011-0.022] unit increase	Affymetrix [321114] (imputed)	N
613	chr6_mcf_hap5	3686002	3686003	rs9368716	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs9368716-A	NR	4E-17		0.023828	[0.018-0.029] unit increase	Affymetrix [321169] (imputed)	N
613	chr6_mcf_hap5	3688822	3688823	rs9469099	23042114	Hirota T	2012-10-07	Nat Genet	Genome-wide association study identifies eight new susceptibility loci for atopic dermatitis in the Japanese population.	Atopic dermatitis	1,472 Japanese ancestry cases, 7,971 Japanese ancestry controls	1,856 Japanese ancestry cases, 7,021 Japanese ancestry controls	6p21.32	C6orf10	rs9469099-G	0.909	5E-19		1.61	[1.44-1.80]	Illumina [606164]	N
613	chr6_mcf_hap5	3690778	3690779	rs2849018	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Diastolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	6p21.32	C6orf10	rs2849018-C	0.6531	2E-17		0.3443	[0.26-0.42] mmHg increase	Affymetrix [NR] (imputed)	N
613	chr6_mcf_hap5	3691374	3691375	rs3132954	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.32	NR	rs3132954-?	NR	3E-11				Affymetrix [~ 8270000] (imputed)	N
613	chr6_mcf_hap5	3693550	3693551	rs1265764	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	C6orf10	rs1265764-A	NR	2E-8		0.0409576	[0.027-0.055] unit decrease	Affymetrix [323858] (imputed)	N
613	chr6_mcf_hap5	3693550	3693551	rs1265764	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	C6orf10	rs1265764-A	NR	1E-8		0.0407492	[0.027-0.055] unit increase	Affymetrix [323123] (imputed)	N
613	chr6_mcf_hap5	3693550	3693551	rs1265764	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.32	C6orf10, XXbac-BPG154L12.5	rs1265764-A	0.0414	7E-7		0.1177	[0.071-0.164] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
613	chr6_mcf_hap5	3694818	3694819	rs78461719	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	6p21.32	NR	rs78461719-T	0.03388599999999997	1E-8		0.0314455	[0.022-0.041] unit increase	Affymetrix [16578495] (imputed)	N
613	chr6_mcf_hap5	3695292	3695293	rs910049	23321320	Urabe Y	2013-01-12	J Hepatol	A genome-wide association study of HCV-induced liver cirrhosis in the Japanese population identifies novel susceptibility loci at the MHC region.	Hepatitis C induced liver cirrhosis	682 Japanese ancestry cases, 1,045 Japanese ancestry controls	936 Japanese ancestry cases, 3,809 Japanese ancestry controls	6p21.32	C6orf10	rs910049-A	0.142	9E-11		1.46	[1.28-1.62]	Illumina [431618]	N
613	chr6_mcf_hap5	3699198	3699199	rs9268301	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6p21.32	C6orf10	rs9268301-A	0.438	2E-6	(Diet carbohydrate )	0.03	[NR] g/d increase	Illumina [899892]	N
613	chr6_mcf_hap5	3701030	3701031	rs368529276	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs368529276-A	0.961	4E-19		2.522	[2.32-2.72]	Illumina [11270530] (imputed)	N
613	chr6_mcf_hap5	3701111	3701112	rs2395148	18576341	Behrens EM	2008-06-24	Arthritis Rheum	Association of the TRAF1-C5 locus on chromosome 9 with juvenile idiopathic arthritis.	Arthritis (juvenile idiopathic)	67 European ancestry cases, 1,952 European ancestry controls, 63 cases	NA	6p21.32	HLA-DRB1	rs2395148-?	NR	2E-10		5.37	[3.02-9.56]	Illumina [524684]	N
613	chr6_mcf_hap5	3704928	3704929	rs13196329	29196614	Sud A	2017-12-01	Nat Commun	Genome-wide association study of classical Hodgkin lymphoma identifies key regulators of disease susceptibility.	Mixed cellularity Hodgkin lymphoma	828 European ancestry cases, 14,315 European ancestry controls	135 cases, 3,069 controls	6p21.32	C6orf10	rs13196329-?	NR	3E-14	(conditioned on rs1633096)	5.88	[3.70-9.09]	Illumina [> 10000000] (imputed)	N
613	chr6_mcf_hap5	3704928	3704929	rs13196329	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral fat	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	6p21.32	C6orf10	rs13196329-C	0.02	3E-6	(women)			Affymetrix, Illumina [2500000] (imputed)	N
613	chr6_mcf_hap5	3706214	3706215	rs7775581	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.32		rs7775581-C	0.429	4E-12				Affymetrix [10369434] (imputed)	N
613	chr6_mcf_hap5	3706476	3706477	rs9268310	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	Systemic lupus erythematosus	1,639 East Asian ancestry cases, 2,410 East Asian ancestry controls	NA			rs9268310-C	NR	7E-14		0.3626	[0.27-0.46] unit decrease	Illumina [NR] (imputed)	N
613	chr6_mcf_hap5	3708704	3708705	rs137931178	26959717	Nicoletti P	2016-03-09	Pharmacogenet Genomics	HLA-DRB1*16: 01-DQB1*05: 02 is a novel genetic risk factor for flupirtine-induced liver injury.	Drug-induced liver injury	620 European ancestry cases, 10,588 European ancestry controls	NA	6p21.32	MHC	rs137931178-?	NR	7E-6		79.0	[11.72-533.7]	Illumina [NR] (imputed)	N
613	chr6_mcf_hap5	3714774	3714775	rs2143462	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	C6orf10	rs2143462-A	NR	7E-12		0.0268233	[0.019-0.034] unit decrease	Affymetrix [323858] (imputed)	N
613	chr6_mcf_hap5	3714774	3714775	rs2143462	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	C6orf10	rs2143462-A	NR	6E-11		0.0256594	[0.018-0.033] unit decrease	Affymetrix [127266] (imputed)	N
613	chr6_mcf_hap5	3715760	3715761	rs3129934	22457343	Martinelli-Boneschi F	2012-03-28	Mult Scler	A genome-wide association study in progressive multiple sclerosis.	Multiple sclerosis	197 European ancestry cases, 234 European ancestry controls	379 European ancestry cases, 398 European ancestry controls	6p21.32	C6orf10	rs3129934-T	0.10	7E-16		2.34	[1.90-2.87]	Affymetrix [277866]	N
613	chr6_mcf_hap5	3715760	3715761	rs3129934	18941528	Comabella M	2008-10-22	PLoS One	Identification of a novel risk locus for multiple sclerosis at 13q31.3 by a pooled genome-wide scan of 500,000 single nucleotide polymorphisms.	Multiple sclerosis	242 European ancestry cases, 242 European ancestry controls	553 European ancestry cases, 1,033 European ancestry controls	6p21.32	HLA-DRB1	rs3129934-T	NR	9E-11		3.3	[2.3-4.9]	Affymetrix [428867]	N
613	chr6_mcf_hap5	3716117	3716118	rs113857285	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Celiac disease (PheCode 557.1)	1,036 European ancestry cases, 455,312 European ancestry controls	NA	6p21.32		rs113857285-A	0.002145	8E-10		4.04	[2.75-5.33] unit increase	NR [11842647] (imputed)	N
613	chr6_mcf_hap5	3716338	3716339	rs3129939	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.32	c6orf10	rs3129939-G	0.1772	2E-40		2.6	[NR]	Illumina [242824]	N
613	chr6_mcf_hap5	3716724	3716724	rs543236673	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	C6orf10	rs543236673-A	NR	2E-9		0.0175479	[0.012-0.023] unit decrease	Affymetrix [319769] (imputed)	N
613	chr6_mcf_hap5	3716724	3716724	rs543236673	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	C6orf10	rs543236673-A	NR	1E-12		0.0231806	[0.017-0.03] unit decrease	Affymetrix [323858] (imputed)	N
613	chr6_mcf_hap5	3716724	3716724	rs543236673	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs543236673-A	NR	3E-8		0.0162709	[0.011-0.022] unit decrease	Affymetrix [319769] (imputed)	N
613	chr6_mcf_hap5	3716724	3716724	rs543236673	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	C6orf10	rs543236673-A	NR	1E-10		0.0209276	[0.015-0.027] unit decrease	Affymetrix [127266] (imputed)	N
613	chr6_mcf_hap5	3716724	3716724	rs543236673	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	C6orf10	rs543236673-A	NR	2E-12		0.0205605	[0.015-0.026] unit increase	Affymetrix [321016] (imputed)	N
613	chr6_mcf_hap5	3716724	3716724	rs543236673	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	C6orf10	rs543236673-A	NR	1E-22		0.0312248	[0.025-0.037] unit increase	Affymetrix [323123] (imputed)	N
613	chr6_mcf_hap5	3716724	3716724	rs543236673	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs543236673-A	NR	4E-10		0.0185214	[0.013-0.024] unit decrease	Affymetrix [321169] (imputed)	N
613	chr6_mcf_hap5	3717205	3717206	rs2273017	21900946	Nakabayashi K	2011-09-08	J Hum Genet	Identification of independent risk loci for Graves' disease within the MHC in the Japanese population.	Graves' disease	1,119 Japanese ancestry cases, 2,718 Japanese ancestry controls	432 Japanese ancestry cases, 1,157 Japanese ancestry controls	6p21.32	MHC	rs2273017-A	0.51	2E-22		1.53	[1.40-1.66]	Perlegen [268068]	N
613	chr6_mcf_hap5	3717524	3717536	rs11275478	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atopic dermatitis	4,296 East Asian ancestry cases, 163,807 East Asian ancestry controls	NA	6p21.32		rs11275478-A	0.218070297	4E-17		0.25364324	[0.19-0.31] unit decrease	Illumina [13428180] (imputed)	N
613	chr6_mcf_hap5	3717865	3717866	rs3129942	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	6p21.32	C6orf10	rs3129942-G	0.742436	3E-18		0.013944	[0.011-0.017] unit decrease	Affymetrix [12370749]	N
613	chr6_mcf_hap5	3718280	3718281	rs3129943	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cirrhosis	2,551 East Asian ancestry cases, 176,175 East Asian ancestry controls	NA	6p21.32		rs3129943-G	0.365494247	2E-11		0.19759746	[0.14-0.26] unit increase	Illumina [13429980] (imputed)	N
613	chr6_mcf_hap5	3718280	3718281	rs3129943	21804548	Hirota T	2011-07-31	Nat Genet	Genome-wide association study identifies three new susceptibility loci for adult asthma in the Japanese population.	Asthma	1,532 Japanese ancestry cases, 3,304 Japanese ancestry controls	5,639 Japanese ancestry cases, 24,608 Japanese ancestry controls	6p21.32	C6orf10	rs3129943-T	0.62	3E-15		1.17	[1.12-1.21]	Illumina [458847]	N
613	chr6_mcf_hap5	3718570	3718571	rs2073044	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	C6orf10	rs2073044-T	NR	3E-16		0.0261214	[0.02-0.032] unit increase	Affymetrix [319769] (imputed)	N
613	chr6_mcf_hap5	3718570	3718571	rs2073044	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs2073044-T	NR	5E-16		0.0258492	[0.02-0.032] unit increase	Affymetrix [319769] (imputed)	N
613	chr6_mcf_hap5	3718570	3718571	rs2073044	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs2073044-T	NR	8E-14		0.0241214	[0.018-0.03] unit increase	Affymetrix [321169] (imputed)	N
613	chr6_mcf_hap5	3718660	3718661	rs2050190	34116867	Tanaka N	2021-06-02	J Allergy Clin Immunol	Eight novel susceptibility loci and putative causal variants in atopic dermatitis.	Atopic dermatitis	2,597 Japanese ancestry cases, 110,504 Japanese ancestry controls, 25,685 European ancestry cases, 76,768 European ancestry controls	NA	6p21.32		rs2050190-?	NR	4E-13		0.8	[0.75-0.85]	Illumina [5170515] (imputed)	N
613	chr6_mcf_hap5	3718660	3718661	rs2050190	22703881	Tang W	2012-06-14	Am J Hum Genet	Genetic associations for activated partial thromboplastin time and prothrombin time, their gene expression profiles, and risk of coronary artery disease.	Activated partial thromboplastin time	9,240 European ancestry individuals	2611 European ancestry individuals	6p21.32	C6orf10	rs2050190-A	NR	7E-7		0.2528	[0.17-0.34] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
613	chr6_mcf_hap5	3719231	3719232	rs2050189	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	C6orf10	rs2050189-C	NR	2E-8		0.0208018	[0.014-0.028] unit decrease	Affymetrix [323858] (imputed)	N
613	chr6_mcf_hap5	3719368	3719369	rs9501618	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs9501618-C	0.016	9E-26	(Complement C4, C4A.C4B.4481.34.2)	1.03	[0.83-1.23] unit increase	Affymetrix [10572788] (imputed)	N
613	chr6_mcf_hap5	3719424	3719425	rs6913309	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Strep throat	52,487 European ancestry cases, 22,017 European ancestry controls	NA	6p21.32	NR	rs6913309-?	NR	5E-7		0.0308	[0.019-0.043] unit decrease	Illumina [at least 560000] (imputed)	N
613	chr6_mcf_hap5	3719424	3719425	rs6913309	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.32	Intergenic	rs6913309-T	NR	4E-6	(men)	0.0229829	[0.013-0.033] unit increase	Illumina [13520550] (imputed)	N
613	chr6_mcf_hap5	3719481	3719482	rs2050188	31375628	Tengvall K	2019-08-02	Proc Natl Acad Sci U S A	Molecular mimicry between Anoctamin 2 and Epstein-Barr virus nuclear antigen 1 associates with multiple sclerosis risk.	Anti-anoctamin 2 antibody levels	11,936 European ancestry individuals	NA	6p21.32	NR	rs2050188-G	NR	2E-14		0.07	[0.046-0.094] unit increase	Illumina [615763]	N
613	chr6_mcf_hap5	3719481	3719482	rs2050188	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	6p21.32	HLA-DRB5, C6orf10	rs2050188-T	0.673	9E-6	(EA)	0.0509	[0.028-0.073] unit increase	Affymetrix, Illumina [NR] (imputed)	N
613	chr6_mcf_hap5	3719481	3719482	rs2050188	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	6p21.32	HLA-DRB5, C6orf10	rs2050188-T	0.67	8E-9		1.06	[1.04-1.08]	Affymetrix, Illumina [NR] (imputed)	N
613	chr6_mcf_hap5	3719509	3719510	rs6913471	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	C6orf10	rs6913471-A	NR	1E-8		0.0182835	[0.012-0.025] unit decrease	Affymetrix [323123] (imputed)	N
613	chr6_mcf_hap5	3719690	3719691	rs2281276	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	C6orf10	rs2281276-G	NR	2E-11		0.0210706	[0.015-0.027] unit increase	Affymetrix [323858] (imputed)	N
613	chr6_mcf_hap5	3719690	3719691	rs2281276	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	C6orf10	rs2281276-G	NR	2E-10		0.0199503	[0.014-0.026] unit increase	Affymetrix [127266] (imputed)	N
613	chr6_mcf_hap5	3719690	3719691	rs2281276	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	C6orf10	rs2281276-G	NR	4E-15		0.0241531	[0.018-0.03] unit decrease	Affymetrix [323123] (imputed)	N
613	chr6_mcf_hap5	3719690	3719691	rs2281276	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	6p21.32	C6orf10	rs2281276-G	0.472805	6E-12		0.01778208	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
613	chr6_mcf_hap5	3720456	3720457	rs3129944	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs3129944-G	NR	4E-10		0.0217534	[0.015-0.029] unit decrease	Affymetrix [321169] (imputed)	N
613	chr6_mcf_hap5	3720792	3720793	rs9378202	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	C6orf10	rs9378202-C	NR	3E-9		0.0239944	[0.016-0.032] unit decrease	Affymetrix [323123] (imputed)	N
613	chr6_mcf_hap5	3720937	3720938	rs9268402	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	C6orf10	rs9268402-G	NR	2E-17		0.0239092	[0.018-0.029] unit decrease	Affymetrix [319769] (imputed)	N
613	chr6_mcf_hap5	3720937	3720938	rs9268402	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs9268402-G	NR	4E-17		0.0236172	[0.018-0.029] unit decrease	Affymetrix [319769] (imputed)	N
613	chr6_mcf_hap5	3720937	3720938	rs9268402	22751097	Lu X	2012-07-01	Nat Genet	Genome-wide association study in Han Chinese identifies four new susceptibility loci for coronary artery disease.	Coronary heart disease	1,515 Han Chinese ancestry cases, 5,019 Han Chinese ancestry controls	15,460 Han Chinese ancestry cases, 11,472 Han Chinese ancestry controls	6p21.32	BTNL2, C6orf10	rs9268402-G	0.59	3E-15		1.16	[1.12-1.20]	Affymetrix [~ 2200000] (imputed)	N
613	chr6_mcf_hap5	3720982	3720983	rs9391858	31566214	Kulminski AM	2019-09-30	J Gerontol A Biol Sci Med Sci	Quantitative and qualitative role of antagonistic heterogeneity in genetics of blood lipids.	Total cholesterol levels	29,902 European ancestry individuals	NA			rs9391858-G	0.14	3E-8		2.4	[1.56-3.24] unit increase	Affymetrix, Illumina [up to 2500000] (imputed)	N
613	chr6_mcf_hap5	3721701	3721702	rs73729220	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.32	NR	rs73729220-G	0.015	6E-7	(women)	0.670827	[0.41-0.93] unit increase	Affymetrix [up to 8900000] (imputed)	N
613	chr6_mcf_hap5	3721701	3721702	rs73729220	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.32	NR	rs73729220-G	0.015	4E-9		0.429629	[0.29-0.57] unit increase	Affymetrix [up to 8900000] (imputed)	N
613	chr6_mcf_hap5	3722119	3722120	rs3129945	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p21.32	NR	rs3129945-?	NR	3E-6		4.704	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
613	chr6_mcf_hap5	3722951	3722952	rs3117106	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	C6orf10	rs3117106-C	NR	4E-11		0.0274536	[0.019-0.036] unit increase	Affymetrix [323123] (imputed)	N
613	chr6_mcf_hap5	3724665	3724666	rs12528797	28107422	de Vries PS	2017-01-20	PLoS One	Comparison of HapMap and 1000 Genomes Reference Panels in a Large-Scale Genome-Wide Association Study.	Fibrinogen levels	91,953 European ancestry individuals (imputed to HapMap)		6p21.32	C6orf10, HCG23	rs12528797-?	NR	9E-9		0.0095	unit increase	Affymetrix, Illumina [2749429] (imputed)	N
613	chr6_mcf_hap5	3724862	3724863	rs7758128	21326295	Jin Y	2011-02-17	J Invest Dermatol	Genome-wide analysis identifies a quantitative trait locus in the MHC class II region associated with generalized vitiligo age of onset.	Vitiligo	1,339 European ancestry cases	677 European ancestry cases	6p21.32	BTNL2, C6orf10	rs7758128-A	0.06	8E-11				Illumina [520460]	N
613	chr6_mcf_hap5	3725174	3725175	rs2395153	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs2395153-G	NR	9E-12		0.0195615	[0.014-0.025] unit increase	Affymetrix [321114] (imputed)	N
613	chr6_mcf_hap5	3725174	3725175	rs2395153	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs2395153-G	NR	3E-19		0.0258131	[0.02-0.031] unit increase	Affymetrix [321169] (imputed)	N
613	chr6_mcf_hap5	3725268	3725269	rs2894254	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	6p21.32	C6orf10, BTNL2	rs2894254-T	NR	1E-13		0.238275	[0.18-0.3] unit increase	Illumina [at least 950000] (imputed)	N
613	chr6_mcf_hap5	3725268	3725269	rs2894254	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.32	NOTCH4, C6orf10	rs2894254-T	0.8879	1E-7	(EA)	0.0337	[0.021-0.046] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
613	chr6_mcf_hap5	3725268	3725269	rs2894254	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.32	BTNL2	rs2894254-T	0.8879	3E-9	(EA, men)	0.0557	[0.037-0.074] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
613	chr6_mcf_hap5	3725268	3725269	rs2894254	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6p21.32	BTNL2	rs2894254-T	0.888	6E-8	(men)	0.058	[0.037-0.079] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
613	chr6_mcf_hap5	3725268	3725269	rs2894254	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6p21.32	BTNL2	rs2894254-T	0.888	6E-8	(EA, men)	0.058	[0.037-0.079] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
613	chr6_mcf_hap5	3725268	3725269	rs2894254	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6p21.32	BTNL2	rs2894254-T	0.8879	6E-7	(EA)	0.0363	[0.022-0.051] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
613	chr6_mcf_hap5	3725268	3725269	rs2894254	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.32	NOTCH4, C6orf10	rs2894254-?	0.8879	5E-7	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
613	chr6_mcf_hap5	3725268	3725269	rs2894254	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.32	BTNL2	rs2894254-?	0.8879	9E-9	(men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
613	chr6_mcf_hap5	3725268	3725269	rs2894254	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.32	BTNL2	rs2894254-?	0.8879	9E-9	(EA, men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
613	chr6_mcf_hap5	3726066	3726067	rs9268435	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Serum alkaline phosphatase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	6p21.32	LOC101929163	rs9268435-?		1E-10		0.0358	[0.025-0.047] unit decrease	Illumina [31500000] (imputed)	N
613	chr6_mcf_hap5	3729136	3729137	rs3117103	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	6p21.32		rs3117103-A	0.859948	4E-9		0.0339726	[0.023-0.045] unit decrease	NR [11722792] (imputed)	N
613	chr6_mcf_hap5	3730033	3730034	rs28732201	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p21.32	NR	rs28732201-?	NR	6E-16		0.1787	[0.14-0.22] unit decrease	Illumina [at least 560000] (imputed)	N
613	chr6_mcf_hap5	3731145	3731146	rs6930777	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6p21.32		rs6930777-?	NR	5E-17		1.14262	[1.11-1.17]	NR [685523]	N
613	chr6_mcf_hap5	3732196	3732197	rs9268465	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HCG23	rs9268465-T	NR	6E-10		0.0196001	[0.013-0.026] unit decrease	Affymetrix [319769] (imputed)	N
613	chr6_mcf_hap5	3732196	3732197	rs9268465	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HCG23	rs9268465-T	NR	2E-8		0.0196784	[0.013-0.027] unit decrease	Affymetrix [323858] (imputed)	N
613	chr6_mcf_hap5	3732196	3732197	rs9268465	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HCG23	rs9268465-T	NR	1E-9		0.0191769	[0.013-0.025] unit decrease	Affymetrix [319769] (imputed)	N
613	chr6_mcf_hap5	3733491	3733492	rs9279623	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	6p21.32	HCG23	rs9279623-G	0.5081	7E-9		5.794	NR z score increase	Illumina [26237160] (imputed)	N
613	chr6_mcf_hap5	3733982	3733983	rs4424066	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	6p21.32	NR	rs4424066-A	0.578029598622173	7E-14		0.024764335	units decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
613	chr6_mcf_hap5	3736795	3736796	rs146003878	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs146003878-A	0.016	5E-11	(conditional)	1.678	[1.52-1.83]	Illumina [11270530] (imputed)	N
613	chr6_mcf_hap5	3737757	3737758	rs3129950	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.32	BTNL2	rs3129950-G	0.8899	4E-9	(men)	0.0593	[0.04-0.079] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
613	chr6_mcf_hap5	3737826	3737827	rs3117099	22688191	Bergen SE	2012-06-12	Mol Psychiatry	Genome-wide association study in a Swedish population yields support for greater CNV and MHC involvement in schizophrenia compared with bipolar disorder.	Bipolar disorder and schizophrenia	2,111 European ancestry schizophrenia cases, 836 European ancestry bipolar disorder cases, 2,535 European ancestry controls	NA	6p21.32	other genes, MHC	rs3117099-?	NR	3E-6		1.25	[NR]	Affymetrix [745006]	N
613	chr6_mcf_hap5	3738070	3738071	rs3117098	21804548	Hirota T	2011-07-31	Nat Genet	Genome-wide association study identifies three new susceptibility loci for adult asthma in the Japanese population.	Asthma	1,532 Japanese ancestry cases, 3,304 Japanese ancestry controls	5,639 Japanese ancestry cases, 24,608 Japanese ancestry controls	6p21.32	BTNL2	rs3117098-G	0.25	5E-12		1.16	[1.11-1.21]	Illumina [458847]	N
613	chr6_mcf_hap5	3738106	3738107	rs9348883	29903748	Debiec H	2018-06-14	J Am Soc Nephrol	Transethnic, Genome-Wide Analysis Reveals Immune-Related Risk Alleles and Phenotypic Correlates in Pediatric Steroid-Sensitive Nephrotic Syndrome.	Childhood steroid-sensitive nephrotic syndrome	244 European ancestry cases, 2,552 European ancestry controls, 56 African cases, 454 African controls, 85 Maghrebian cases, 261 Maghrebian controls	NA	6p21.32	LOC101929163, HCG23, BTNL2	rs9348883-T	0.94	9E-7	(conditioned on rs1063348 & rs28366266)	3.5	[2.13-5.83]	Illumina [at least 7529344] (imputed)	N
613	chr6_mcf_hap5	3738246	3738247	rs3117097	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling nervous	373,121 European ancestry individuals	NA	6p21.32	PSORS1C1	rs3117097-A	0.164022	4E-10		6.26	z score increase	NR [10847151] (imputed)	N
613	chr6_mcf_hap5	3739017	3739018	rs16870123	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	6p21.32	NR	rs16870123-?	NR	1E-10		6.408	NR z score decrease	Illumina [at least 830937] (imputed)	N
613	chr6_mcf_hap5	3740690	3740691	rs3817971	34871226	Kim SY	2021-11-01	Medicine (Baltimore)	Genome-wide association study identifies BTNL2 associated with atopic asthma in children.	Atopic asthma	243 East Asian ancestry child cases, 134 East Asian ancestry child controls	NA	6p21.32		rs3817971-A	NR	6E-7		3.509	[2.09-5.889]	Affymetrix [423461]	N
613	chr6_mcf_hap5	3740690	3740691	rs3817971	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p21.32	C6orf10, BTNL2	rs3817971-C	0.03	5E-6	(Turkish)	2.62	[1.71-4.01]	Illumina [up to 547389]	N
613	chr6_mcf_hap5	3741042	3741043	rs17202393	33592630	Herrera-Rivero M	2021-02-16	Thromb Haemost	Single- and Multimarker Genome-Wide Scans Evidence Novel Genetic Risk Modifiers for Venous Thromboembolism.	Venous thromboembolism	964 European ancestry cases, 899 European ancestry controls	NA	6p21.32	BTNL2, HCG23	rs17202393-A	NR	4E-38		0.03743	[0.02273-0.06163]	Illumina [484621]	N
613	chr6_mcf_hap5	3741568	3741569	rs114516436	27629369	Gao J	2016-09-15	Neuropsychopharmacology	Genome-Wide Association Study of Loneliness Demonstrates a Role for Common Variation.	Loneliness (multivariate analysis)	8,490 European ancestry individuals, 1,228 African American individuals, 867 Hispanic American individuals, 175 individuals	NA	6p21.32	BTNL2, HCG23, C6orf10	rs114516436-?	NR	2E-6	(EA)			Illumina [7205781] (imputed)	N
613	chr6_mcf_hap5	3742772	3742773	rs1980493	25936594	Tomer Y	2015-04-27	J Autoimmun	Genome wide identification of new genes and pathways in patients with both autoimmune thyroiditis and type 1 diabetes.	Type 1 diabetes and autoimmune thyroid diseases	346 European ancestry cases, 727 European ancestry controls	185 European ancestry cases, 340 European ancestry controls	6p21.32	BTNL2	rs1980493-G	NR	2E-20		2.5034		Illumina [514008]	N
613	chr6_mcf_hap5	3742772	3742773	rs1980493	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.32	BTNL2	rs1980493-G	0.1656	1E-48		2.87	[NR]	Illumina [242824]	N
613	chr6_mcf_hap5	3742772	3742773	rs1980493	19287509	Cui J	2009-03-14	Mol Med	Genome-wide association study of determinants of anti-cyclic citrullinated peptide antibody titer in adults with rheumatoid arthritis.	Anti-cyclic Citrullinated Peptide Antibody	531 European ancestry cases	849 European ancestry cases	6p21.32	HLA-DRA, BTNL2	rs1980493-?	0.13	5E-7				Affymetrix [97248]	N
613	chr6_mcf_hap5	3743373	3743374	rs2076530	22936702	Hofmann S	2012-08-30	Eur Respir J	Genome-wide association analysis reveals 12q13.3-q14.1 as new risk locus for sarcoidosis.	Sarcoidosis	637 European ancestry cases, 1,233 European ancestry controls	3,121 European ancestry cases, 4,284 European ancestry controls	6p21.32	BTNL2	rs2076530-?	NR	3E-11	(Chronic)			Affymetrix [677619]	N
613	chr6_mcf_hap5	3743401	3743402	rs9268480	19915573	Asano K	2009-11-15	Nat Genet	A genome-wide association study identifies three new susceptibility loci for ulcerative colitis in the Japanese population.	Ulcerative colitis	376 Japanese ancestry cases, 934 Japanese ancestry controls	376 Japanese ancestry cases, 1,097 Japanese ancestry controls	6p21.32	BTNL2	rs9268480-G	0.91	3E-6		1.82	[1.43-2.33]	Illumina [513923]	N
613	chr6_mcf_hap5	3743512	3743513	rs2076529	32766473	Yoshida K	2020-05-19	Hepatol Commun	Genome-Wide Association Study of Lean Nonalcoholic Fatty Liver Disease Suggests Human Leukocyte Antigen as a Novel Candidate Locus.	Lean nonalcoholic fatty liver disease	275 Japanese ancestry cases, 1,411 Japanese ancestry controls	NA	6p21.32	NR	rs2076529-?	NR	2E-7		1.66	[1.37-2.00]	Affymetrix [NR]	N
613	chr6_mcf_hap5	3743512	3743513	rs2076529	20935629	Heid IM	2010-10-10	Nat Genet	Meta-analysis identifies 13 new loci associated with waist-hip ratio and reveals sexual dimorphism in the genetic basis of fat distribution.	Waist-hip ratio	Up to 77,167 European ancestry individuals	Up to 113,636 European ancestry individuals	6p21.32	BTNL2	rs2076529-C	0.43	4E-7		0.02	[NR] unit increase	Affymetrix, Illumina, Perlegen [up to 2850269] (imputed)	N
613	chr6_mcf_hap5	3745976	3745977	rs4248166	29534301	Nishida N	2018-03-13	Hepatology	Key HLA-DRB1-DQB1 haplotypes and role of the BTNL2 gene for response to a hepatitis B vaccine.	Response to hepatitis B vaccine	107 Japanese ancestry low responder individuals, 351 Japanese ancestry intermediate responder individuals, 735 Japanese ancestry high responder individuals	NA	6p21.32	BTNL2	rs4248166-?		1E-12		0.124	unit decrease	Affymetrix [427664]	N
613	chr6_mcf_hap5	3745976	3745977	rs4248166	26819262	Zhou Y	2016-01-27	Mult Scler	Genetic loci for Epstein-Barr virus nuclear antigen-1 are associated with risk of multiple sclerosis.	Epstein Barr virus nuclear antigen 1 IgG levels	1,243 parents and up to 2,356 children from 992 families, 1,956 Mexican American individuals		6p21.32	NR	rs4248166-T		9E-11	(Mexican American)	0.16	unit decrease	Illumina [up to 2428201] (imputed)	N
613	chr6_mcf_hap5	3745976	3745977	rs4248166	26819262	Zhou Y	2016-01-27	Mult Scler	Genetic loci for Epstein-Barr virus nuclear antigen-1 are associated with risk of multiple sclerosis.	Epstein Barr virus nuclear antigen 1 IgG levels	1,243 parents and up to 2,356 children from 992 families, 1,956 Mexican American individuals		6p21.32	NR	rs4248166-T		1E-9		0.16	unit decrease	Illumina [up to 2428201] (imputed)	N
613	chr6_mcf_hap5	3746574	3746575	rs3117116	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein BGLAP	5,367 Icelandic ancestry individuals	NA	6p21.32		rs3117116-G	0.2246	5E-20		0.208543	[0.16-0.25] unit decrease	Illumina [7506463] (imputed)	N
613	chr6_mcf_hap5	3747644	3747645	rs3817963	27501781	Shiraishi K	2016-08-09	Nat Commun	Association of variations in HLA class II and other loci with susceptibility to EGFR-mutated lung adenocarcinoma.	EGFR mutation-positive lung adenocarcinoma	663 Japanese ancestry cases, 4,367 Japanese ancestry controls	2,510 Japanese ancestry cases, 10,791 Japanese ancestry controls	6p21.32	BTNL2	rs3817963-G	0.316	1E-16		1.29	[1.21-1.37]	Illumina [NR] (imputed)	N
613	chr6_mcf_hap5	3747644	3747645	rs3817963	23472185	Mero IL	2013-03-05	PLoS One	Oligoclonal band status in Scandinavian multiple sclerosis patients is associated with specific genetic risk alleles.	Multiple sclerosis (OCB status)	1,367 European ancestry OCB positive cases, 161 European ancestry OCB negative cases, 428 European ancestry controls	NA	6p21.32	BTNL2	rs3817963-?	NR	8E-6	(OCB positive vs. controls)	1.52	[1.27-1.79]	Illumina [495970]	N
613	chr6_mcf_hap5	3747644	3747645	rs3817963	23472185	Mero IL	2013-03-05	PLoS One	Oligoclonal band status in Scandinavian multiple sclerosis patients is associated with specific genetic risk alleles.	Multiple sclerosis (OCB status)	1,367 European ancestry OCB positive cases, 161 European ancestry OCB negative cases	3,029 European ancestry OCB positive cases, 374 European ancestry OCB negative cases	6p21.32	BTNL2	rs3817963-?	NR	6E-10		1.61	[1.38-1.87]	Illumina [495970]	N
613	chr6_mcf_hap5	3747644	3747645	rs3817963	23321320	Urabe Y	2013-01-12	J Hepatol	A genome-wide association study of HCV-induced liver cirrhosis in the Japanese population identifies novel susceptibility loci at the MHC region.	Hepatitis C induced liver cirrhosis	682 Japanese ancestry cases, 1,045 Japanese ancestry controls	936 Japanese ancestry cases, 3,809 Japanese ancestry controls	6p21.32	BTNL2	rs3817963-A	0.315	1E-8		1.3	[1.18-1.42]	Illumina [431618]	N
613	chr6_mcf_hap5	3747644	3747645	rs3817963	22797724	Shiraishi K	2012-07-15	Nat Genet	A genome-wide association study identifies two new susceptibility loci for lung adenocarcinoma in the Japanese population.	Lung adenocarcinoma	1,695 Japanese ancestry cases, 5,333 Japanese ancestry controls	4,334 Japanese ancestry cases, 8,202 Japanese ancestry controls	6p21.32	BTNL2	rs3817963-G	0.318	3E-10		1.18	[1.12-1.24]	Illumina [538166]	N
613	chr6_mcf_hap5	3748126	3748127	rs9268485	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	BTNL2	rs9268485-C	NR	1E-22		0.0275591	[0.022-0.033] unit decrease	Affymetrix [319769] (imputed)	N
613	chr6_mcf_hap5	3748126	3748127	rs9268485	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	BTNL2	rs9268485-C	NR	2E-12		0.0220667	[0.016-0.028] unit decrease	Affymetrix [323858] (imputed)	N
613	chr6_mcf_hap5	3748126	3748127	rs9268485	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	BTNL2	rs9268485-C	NR	4E-22		0.0271651	[0.022-0.033] unit decrease	Affymetrix [319769] (imputed)	N
613	chr6_mcf_hap5	3748126	3748127	rs9268485	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	BTNL2	rs9268485-C	NR	3E-11		0.0208559	[0.015-0.027] unit decrease	Affymetrix [127266] (imputed)	N
613	chr6_mcf_hap5	3748126	3748127	rs9268485	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	BTNL2	rs9268485-C	NR	3E-13		0.0204722	[0.015-0.026] unit increase	Affymetrix [321016] (imputed)	N
613	chr6_mcf_hap5	3748126	3748127	rs9268485	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	BTNL2	rs9268485-C	NR	2E-12		0.0216048	[0.016-0.028] unit increase	Affymetrix [323123] (imputed)	N
613	chr6_mcf_hap5	3748128	3748129	rs9268486	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs9268486-T	0.248	8E-27	(conditional)	1.384	[1.33-1.44]	Illumina [11270530] (imputed)	N
613	chr6_mcf_hap5	3749049	3749050	rs3763305	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	6p21.32		rs3763305-G	0.949	4E-9				Affymetrix [10369434] (imputed)	N
613	chr6_mcf_hap5	3749049	3749050	rs3763305	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.32	BTNL2	rs3763305-A	0.051434	4E-15		0.041934814	[0.031-0.052] unit decrease	Affymetrix [93095623] (imputed)	N
613	chr6_mcf_hap5	3750148	3750149	rs9461741	25569183	Vijai J	2015-01-08	Nat Commun	A genome-wide association study of marginal zone lymphoma shows association to the HLA region.	Marginal zone lymphoma	825 European ancestry cases, 6,221 European ancestry controls	456 European ancestry cases, 906 European ancestry controls	6p21.32	BTNL2	rs9461741-C	0.018	4E-15		2.66	[2.08-3.39]	Illumina [611856]	N
613	chr6_mcf_hap5	3750177	3750178	rs2076525	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	BTNL2	rs2076525-C	NR	9E-15		0.0237827	[0.018-0.03] unit increase	Affymetrix [321169] (imputed)	N
613	chr6_mcf_hap5	3750396	3750397	rs2076523	29903748	Debiec H	2018-06-14	J Am Soc Nephrol	Transethnic, Genome-Wide Analysis Reveals Immune-Related Risk Alleles and Phenotypic Correlates in Pediatric Steroid-Sensitive Nephrotic Syndrome.	Childhood steroid-sensitive nephrotic syndrome	56 African cases, 454 African controls	NA	6p21.32	BTNL2	rs2076523-?	NR	2E-9		4.8	[2.9-7.9]	Illumina [at least 7529344] (imputed)	N
613	chr6_mcf_hap5	3752746	3752747	rs10947260	28369058	Folkersen L	2017-04-03	PLoS Genet	Mapping of 79 loci for 83 plasma protein biomarkers in cardiovascular disease.	Blood protein levels in cardiovascular risk	3,394 European ancestry individuals	2,639 individuals	6p21.32	NOTCH4, AGER, ATF6B	rs10947260-C	0.1	6E-9		0.25	unit increase	Illumina [5270624] (imputed)	N
613	chr6_mcf_hap5	3752793	3752794	rs10947261	23850713	Yang SK	2013-07-14	Gut	Genome-wide association study of Crohn's disease in Koreans revealed three new susceptibility loci and common attributes of genetic susceptibility across ethnic populations.	Crohn's disease	532 Korean ancestry cases, 733 Korean ancestry controls	1,779 Korean ancestry cases, 1,709 Korean ancestry controls	6p21.32	HLA-DRA, HLA-DRB5, BTNL2, HLA-DRB1, HLA-DQA1	rs10947261-T	0.294	3E-12		1.36	[1.25-1.49]	Illumina [5664371] (imputed)	N
613	chr6_mcf_hap5	3752873	3752874	rs10947262	20305777	Nakajima M	2010-03-18	PLoS One	New sequence variants in HLA class II/III region associated with susceptibility to knee osteoarthritis identified by genome-wide association study.	Knee osteoarthritis	899 Japanese ancestry cases, 3,396 Japanese ancestry controls	167 Japanese ancestry cases, 347 Japanese ancestry controls, 813 European ancestry  cases, 1,071 European ancestry controls,	6p21.32	HLA-DQA2, HLA-DQB1, BTNL2	rs10947262-T	0.42	5E-9		1.31	[1.20-1.44]	Illumina [459393]	N
613	chr6_mcf_hap5	3753261	3753262	rs3806156	20410501	Jin Y	2010-04-21	N Engl J Med	Variant of TYR and autoimmunity susceptibility loci in generalized vitiligo.	Vitiligo	1,392 European ancestry cases, 2,629 European ancestry controls	647 European ancestry cases, 1,056 European ancestry controls, 183 European ancestry trios, 1,383 European ancestry individuals from 332 families	6p21.32	HLA-DRA, BTNL2, HLA-DQA1	rs3806156-T	0.37	7E-19		1.42	[1.32-1.54]	Illumina [520460]	N
613	chr6_mcf_hap5	3753364	3753365	rs3806157	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	BTNL2	rs3806157-G	NR	4E-8		0.0162252	[0.01-0.022] unit increase	Affymetrix [321114] (imputed)	N
613	chr6_mcf_hap5	3754157	3754158	rs2395158	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	6p21.32	BTNL2	rs2395158-A	0.830652	5E-40		0.0345684	[0.029-0.04] unit increase	Affymetrix [NR] (imputed)	N
613	chr6_mcf_hap5	3755533	3755534	rs3763309	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls	NA	6p21.32	HLA-DRA, BTNL2	rs3763309-A	0.21	1E-18		0.13	[0.091-0.169] unit increase	Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
613	chr6_mcf_hap5	3755533	3755534	rs3763309	24449572	Orozco G	2014-01-01	Arthritis Rheumatol	Novel rheumatoid arthritis susceptibility locus at 22q12 identified in an extended UK genome-wide association study.	Rheumatoid arthritis	3,034 European ancestry cases, 5,271 European ancestry controls	4,726 European ancestry cases, 2,625 European ancestry controls	6p21.32	HLA-DRB1	rs3763309-?		2E-124		2.3	[2.14-2.46]	Affymetrix, Illumina [1831729] (imputed)	N
613	chr6_mcf_hap5	3755736	3755737	rs3763311	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Cancer	56,634 White British ancestry cases, 218,196 White British ancestry controls	NA	6p21.32		rs3763311-?	NR	1E-5		0.967842	[0.95-0.98]	NR [688737]	N
613	chr6_mcf_hap5	3755908	3755909	rs3763312	26039976	Wei Z	2015-06-17	Sci Rep	Genome-Wide Association Studies of HIV-1 Host Control in Ethnically Diverse Chinese Populations.	HIV-1 viral setpoint	326 Han Chinese ancestry cases, 58 Dai Chinese ancestry cases, 40 Jingpo Chinese ancestry cases, 83 Uygur Chinese ancestry cases, 11 Hui Chinese ancestry cases, 20 East Asian cases	NA	6p21.32	BTNL2, HLA-DRA	rs3763312-A	0.15	6E-6	(Han)	0.4002	unit decrease	Illumina [up to 528294]	N
613	chr6_mcf_hap5	3755920	3755921	rs17208853	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Skin reflectance (Melanin index)	720 South Asian ancestry individuals		6p21.32	NR	rs17208853-C	NR	8E-6		0.649209	[0.36-0.93] unit decrease	Affymetrix, Illumina [at least 398118] (imputed)	N
613	chr6_mcf_hap5	3756031	3756032	rs3763313	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.32		rs3763313-C	0.17885300000000004	1E-26		1.0591807	[1.05-1.08]	Affymetrix, Illumina [9851866] (imputed)	N
613	chr6_mcf_hap5	3756031	3756032	rs3763313	20041166	Fellay J	2009-12-24	PLoS Genet	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	6p21.32	NOTCH4, BTNL2	rs3763313-?	NR	2E-6	(progression)			Illumina [NR]	N
613	chr6_mcf_hap5	3756077	3756078	rs9268500	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (drugs affecting bone structure and mineralization)	7,870 European ancestry cases, 207,798 European ancestry controls	NA	6p21.32	BTNL2	rs9268500-T	0.0508279	2E-8		0.20306516	[0.13-0.27] unit increase	Affymetrix [7288503] (imputed)	N
613	chr6_mcf_hap5	3756348	3756349	rs3763317	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	BTNL2	rs3763317-T	NR	1E-12		0.0200715	[0.015-0.026] unit increase	Affymetrix [319769] (imputed)	N
613	chr6_mcf_hap5	3756348	3756349	rs3763317	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	BTNL2	rs3763317-T	NR	1E-10		0.0202983	[0.014-0.026] unit increase	Affymetrix [323858] (imputed)	N
613	chr6_mcf_hap5	3756348	3756349	rs3763317	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	BTNL2	rs3763317-T	NR	6E-12		0.0194272	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
613	chr6_mcf_hap5	3756348	3756349	rs3763317	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	BTNL2	rs3763317-T	NR	2E-9		0.0188282	[0.013-0.025] unit increase	Affymetrix [127266] (imputed)	N
613	chr6_mcf_hap5	3756348	3756349	rs3763317	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	BTNL2	rs3763317-T	NR	2E-14		0.0235125	[0.017-0.03] unit decrease	Affymetrix [323123] (imputed)	N
613	chr6_mcf_hap5	3756348	3756349	rs3763317	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	BTNL2	rs3763317-T	NR	2E-13		0.0209669	[0.015-0.027] unit increase	Affymetrix [321169] (imputed)	N
613	chr6_mcf_hap5	3756348	3756349	rs3763317	23028341	Yang X	2012-09-13	PLoS Genet	Genome-wide association study for serum complement C3 and C4 levels in healthy Chinese subjects.	Complement C3 and C4 levels	1,999 Han Chinese ancestry male individuals	1,496 Han Chinese ancestry male individuals	6p21.32	HLA-DRB	rs3763317-C	0.37	9E-66	(Serum level of C4)	0.12	[0.10-0.14] g/L increase	Illumina [1940245] (imputed)	N
613	chr6_mcf_hap5	3756613	3756614	rs116835963	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs116835963-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
613	chr6_mcf_hap5	3756968	3756969	rs9268505	33713768	Akenroye AT	2021-03-10	J Allergy Clin Immunol	Genome-wide Association study of Asthma, Total IgE, and Lung function in a Cohort of Peruvian Children.	Serum IgE levels	727 Peruvian individuals	NA	6p21.32		rs9268505-?	NR	6E-8		0.211	unit increase	Illumina [NR] (imputed)	N
613	chr6_mcf_hap5	3758156	3758157	rs3129962	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	6p21.32	BTNL2	rs3129962-G	0.870649	8E-18		0.0243898	[0.019-0.03] unit increase	Affymetrix [NR] (imputed)	N
613	chr6_mcf_hap5	3758262	3758263	rs9268516	33328473	Ahluwalia TS	2020-12-16	Nat Commun	FUT2-ABO epistasis increases the risk of early childhood asthma and Streptococcus pneumoniae respiratory illnesses.	Childhood asthma with severe exacerbations	2,866 European ancestry cases,  65,415 European ancestry controls	NA	6p21.32	NR	rs9268516-A	NR	5E-10		0.1936	[0.13-0.25] unit increase	Illumina [up to 525976] (imputed)	N
613	chr6_mcf_hap5	3758262	3758263	rs9268516	23028483	Ramasamy A	2012-09-28	PLoS One	Genome-wide association studies of asthma in population-based cohorts confirm known and suggested loci and identify an additional association near HLA.	Asthma	1,716 European ancestry cases, 16,888 European ancestry controls	4,035 European ancestry cases, 11,251 European ancestry controls	6p21.32	HLA-DRA, BTNL2	rs9268516-T	0.24	1E-8		1.15	[1.10-1.21]	Affymetrix, Illumina [~ 2200000] (imputed)	N
613	chr6_mcf_hap5	3758509	3758510	rs9405098	23321320	Urabe Y	2013-01-12	J Hepatol	A genome-wide association study of HCV-induced liver cirrhosis in the Japanese population identifies novel susceptibility loci at the MHC region.	Hepatitis C induced liver cirrhosis	682 Japanese ancestry cases, 1,045 Japanese ancestry controls	936 Japanese ancestry cases, 3,809 Japanese ancestry controls	6p21.32	intergenic	rs9405098-A	0.253	1E-10		1.37	[1.24-1.51]	Illumina [431618]	N
613	chr6_mcf_hap5	3759680	3759681	rs9380294	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p21.32	BTNL2, HLA-DRA	rs9380294-C	0.01	7E-6	(EA)	4.76	[2.25-10.07]	Illumina [up to 547389]	N
613	chr6_mcf_hap5	3760508	3760509	rs7759742	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI in non-smokers	75,379 European ancestry women, 45,811 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	6p21.32	BTNL2	rs7759742-A	0.5117	1E-7		0.0144	[0.0091-0.0197] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
613	chr6_mcf_hap5	3760508	3760509	rs7759742	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (joint analysis main effects and smoking interaction)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	6p21.32	BTNL2	rs7759742-A	0.5117	1E-8				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
613	chr6_mcf_hap5	3760508	3760509	rs7759742	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	6p21.32	BTNL2	rs7759742-A	0.5117	3E-6	(men)	0.0248	[0.014-0.035] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
613	chr6_mcf_hap5	3760508	3760509	rs7759742	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	6p21.32	BTNL2	rs7759742-A	0.5117	1E-9		0.0217	[0.015-0.029] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
613	chr6_mcf_hap5	3760508	3760509	rs7759742	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex x age interaction (4df test)	up to 43,776 European ancestry men aged <50, up to 50,526 European ancestry women aged <50, up to 69,944 European ancestry men aged >50, up to 88,129 European ancestry women aged >50	NA	6p21.32	NR	rs7759742-A	0.509001212874385	2E-12				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
613	chr6_mcf_hap5	3760508	3760509	rs7759742	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p21.32	BTNL2	rs7759742-A	0.517	2E-11		0.0224	[0.016-0.029] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
613	chr6_mcf_hap5	3760508	3760509	rs7759742	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p21.32	BTNL2	rs7759742-A	0.5158	5E-8	(women)	0.0241	[0.015-0.033] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
613	chr6_mcf_hap5	3760508	3760509	rs7759742	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p21.32	BTNL2	rs7759742-A	0.5154	4E-6	(men)	0.0223	[0.013-0.032] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
613	chr6_mcf_hap5	3760508	3760509	rs7759742	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p21.32	BTNL2	rs7759742-A	0.511	4E-11	(EA)	0.0226	[0.016-0.029] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
613	chr6_mcf_hap5	3760508	3760509	rs7759742	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p21.32	BTNL2	rs7759742-A	0.5107	2E-7	(EA, women)	0.0237	[0.015-0.033] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
613	chr6_mcf_hap5	3760508	3760509	rs7759742	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p21.32	BTNL2	rs7759742-A	0.5106	5E-6	(EA, men)	0.0226	[0.013-0.032] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
613	chr6_mcf_hap5	3761045	3761045	rs143325653	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Scarlet fever	6,812 European ancestry cases, 113,837 European ancestry controls	NA	6p21.32	NR	rs143325653-?	NR	6E-7		0.0908	[0.055-0.126] unit increase	Illumina [at least 560000] (imputed)	N
613	chr6_mcf_hap5	3761045	3761045	rs143325653	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p21.32	NR	rs143325653-?	NR	3E-20		0.1121	[0.088-0.136] unit decrease	Illumina [at least 560000] (imputed)	N
613	chr6_mcf_hap5	3761827	3761828	rs4959027	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	Blood glucose levels	291,107 British ancestry individuals	NA	6p21.32	TBC1D22B	rs4959027-A	0.234405	5E-6		0.00399988	[0.0023-0.0057] unit decrease	Affymetrix [9463307] (imputed)	N
613	chr6_mcf_hap5	3761827	3761828	rs4959027	23449627	Cousminer DL	2013-02-27	Hum Mol Genet	Genome-wide association and longitudinal analyses reveal genetic loci linking pubertal height growth, pubertal timing and childhood adiposity.	Pubertal anthropometrics	up to 5,043 European ancestry males, up to 5,756 European ancestry females	NA	6p21.32	TAP2, HLA-DRA	rs4959027-G	0.82	9E-7	(Pubertal growth)	0.09	[0.057-0.123] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
613	chr6_mcf_hap5	3761915	3761916	rs4959028	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Effector Memory CD4+ T cell %CD4+ T cell	3,427 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs4959028-G	0.22877	3E-10		0.2111	[0.15-0.28] unit increase	Illumina [18349913] (imputed)	N
613	chr6_mcf_hap5	3761985	3761986	rs6930571	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.32	BTNL2	rs6930571-T	0.1659	2E-8		0.0561	[0.037-0.076] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
613	chr6_mcf_hap5	3762350	3762351	rs6912701	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.32	NR	rs6912701-T	0.014	6E-7	(women)	0.704901	[0.43-0.98] unit increase	Affymetrix [up to 8900000] (imputed)	N
613	chr6_mcf_hap5	3762350	3762351	rs6912701	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.32	NR	rs6912701-T	0.014	3E-9		0.454746	[0.31-0.6] unit increase	Affymetrix [up to 8900000] (imputed)	N
613	chr6_mcf_hap5	3763304	3763305	rs9268541	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6p21.32		rs9268541-C	0.054698	1E-10		0.03155108	[0.022-0.041] unit increase	Affymetrix [93095623] (imputed)	N
613	chr6_mcf_hap5	3763669	3763670	rs72847996	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs72847996-A	0.19	4E-8		4.04	[3.10-5.28]	Illumina [NR] (imputed)	N
613	chr6_mcf_hap5	3763710	3763711	rs80032720	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	IgA nephropathy	1,180 East Asian ancestry cases, 899 East Asian ancestry controls	NA			rs80032720-A	NR	9E-8		0.524129	[0.33-0.72] unit decrease	Illumina [NR] (imputed)	N
613	chr6_mcf_hap5	3764176	3764177	rs3135377	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	BTNL2	rs3135377-A	NR	2E-8		0.0200714	[0.013-0.027] unit increase	Affymetrix [323123] (imputed)	N
613	chr6_mcf_hap5	3766582	3766583	rs2395163	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	BTNL2	rs2395163-C	NR	7E-9		0.0197156	[0.013-0.026] unit increase	Affymetrix [321114] (imputed)	N
613	chr6_mcf_hap5	3766582	3766583	rs2395163	22451204	Pankratz N	2012-03-01	Ann Neurol	Meta-analysis of Parkinson's disease: identification of a novel locus, RIT2.	Parkinson's disease	4,238 European ancestry cases, 4,239 European ancestry controls	3,738 European ancestry cases, 2,111 European ancestry controls	6p21.32	LOC642072	rs2395163-?	NR	3E-11		1.24	[NR]	Illumina [2500000] (imputed)	N
613	chr6_mcf_hap5	3767048	3767049	rs2395166	33736632	Zeng Z	2021-03-18	BMC Med Genomics	Genome-wide association study identifies new loci associated with risk of HBV infection and disease progression.	Persistent hepatitis B virus infection	587 Chinese ancestry persistent cases, 275 Chinese ancestry clearance controls	NA	6p21.32	HLA-DRA	rs2395166-C	0.2182	1E-7		0.4534	NR	Affymetrix [607153]	N
613	chr6_mcf_hap5	3767048	3767049	rs2395166	28424481	Sugiura-Ogasawara M	2017-04-20	J Hum Genet	The first genome-wide association study identifying new susceptibility loci for obstetric antiphospholipid syndrome.	Obstetric antiphospholipid syndrome	115 Japanese ancestry female cases, 419 Japanese ancestry male and female controls	NA	6p21.32	HLA-DRA	rs2395166-T	0.71	3E-6		2.564103	[1.69-3.85]	Affymetrix [426344]	N
613	chr6_mcf_hap5	3767090	3767091	rs9461744	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4+ CD8dim T cell Absolute Count	3,652 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9461744-G	0.21272	7E-12		0.2434	[0.17-0.31] unit increase	Illumina [18427348] (imputed)	N
613	chr6_mcf_hap5	3767090	3767091	rs9461744	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4+ CD8dim T cell %lymphocyte	3,668 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9461744-G	0.21247	8E-19		0.3015	[0.24-0.37] unit increase	Illumina [18430788] (imputed)	N
613	chr6_mcf_hap5	3767090	3767091	rs9461744	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4+ CD8dim T cell %leukocyte	3,668 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9461744-G	0.21247	1E-16		0.2827	[0.22-0.35] unit increase	Illumina [18430788] (imputed)	N
613	chr6_mcf_hap5	3767319	3767320	rs2213581	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	6p21.32	BTNL2	rs2213581-T	0.2346	2E-11		0.002	[0.0014-0.0026] unit increase	Affymetrix [15275733] (imputed)	N
613	chr6_mcf_hap5	3767916	3767917	rs116869525	26151496	Chen PL	2015-07-07	Nat Commun	Genetic determinants of antithyroid drug-induced agranulocytosis by human leukocyte antigen genotyping and genome-wide association study.	Thionamide-induced agranulocytosis in Graves' disease	21 East Asian ancestry cases with agranulocytosis, 662 East Asian ancestry cases without agranulocytosis	21 East Asian ancestry cases with agranulocytosis, 546 East Asian ancestry cases without agranulocytosis	6p21.32	HLA-DRB1*08:03	rs116869525-T	0.083	1E-8	(trend)	4.16	[2.50-6.90] (allelic)	Affymetrix [522980]	N
613	chr6_mcf_hap5	3768028	3768029	rs3135365	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PRTN3	5,361 Icelandic ancestry individuals	NA	6p21.32		rs3135365-C	0.2736	5E-56		0.319492	[0.28-0.36] unit decrease	Illumina [7506463] (imputed)	N
613	chr6_mcf_hap5	3768028	3768029	rs3135365	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p21.32	BTNL2	rs3135365-C	0.022	9E-6		0.202	[0.11-0.29] unit increase	Affymetrix, Illumina [7374092] (imputed)	N
613	chr6_mcf_hap5	3768078	3768079	rs9268557	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.32		rs9268557-T	0.525	2E-25				Affymetrix [10369434] (imputed)	N
613	chr6_mcf_hap5	3768078	3768079	rs9268557	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.32		rs9268557-T	0.525	3E-16				Affymetrix [10369434] (imputed)	N
613	chr6_mcf_hap5	3768078	3768079	rs9268557	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.32		rs9268557-T	0.525	1E-45				Affymetrix [10369434] (imputed)	N
613	chr6_mcf_hap5	3768078	3768079	rs9268557	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	BTNL2	rs9268557-C	NR	1E-12		0.0202435	[0.015-0.026] unit increase	Affymetrix [321169] (imputed)	N
613	chr6_mcf_hap5	3768078	3768079	rs9268557	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p21.32	NR	rs9268557-?	NR	4E-15		0.0947	[0.071-0.118] unit increase	Illumina [at least 560000] (imputed)	N
613	chr6_mcf_hap5	3768078	3768079	rs9268557	26272072	Jiang X	2015-08-13	Rheumatology (Oxford)	An Immunochip-based interaction study of contrasting interaction effects with smoking in ACPA-positive versus ACPA-negative rheumatoid arthritis.	ACPA-positive rheumatoid arthritis (smoking interaction)	340 European ancestry never-smoker cases, 493 European ancestry ever-smoker cases, 746 European ancestry never-smoker controls, 994 European ancestry ever-smoker controls	187 European ancestry never-smoker cases, 421 European ancestry ever-smoker cases, 461 European ancestry never-smoker controls, 447 European ancestry ever-smoker controls	6p21.32	NR	rs9268557-?	NR	3E-10	(adjusted for HLA shared epitope)	2.5	[1.92-3.7]	Illumina [133648] (imputed)	N
613	chr6_mcf_hap5	3768164	3768165	rs9268559	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	6p21.32		rs9268559-?	NR	5E-8				Affymetrix [NR] (imputed)	N
613	chr6_mcf_hap5	3768164	3768165	rs9268559	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	6p21.32		rs9268559-G	0.023054	2E-12		0.054041814	[0.039-0.069] unit decrease	Affymetrix [93095623] (imputed)	N
613	chr6_mcf_hap5	3768164	3768165	rs9268559	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.32	NR	rs9268559-G	0.013	4E-7	(women)	0.762177	[0.47-1.05] unit increase	Affymetrix [up to 8900000] (imputed)	N
613	chr6_mcf_hap5	3768164	3768165	rs9268559	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.32	NR	rs9268559-G	0.013	2E-8		0.442409	[0.29-0.6] unit increase	Affymetrix [up to 8900000] (imputed)	N
613	chr6_mcf_hap5	3768285	3768286	rs9268560	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	BTNL2	rs9268560-C	NR	5E-17		0.023445	[0.018-0.029] unit decrease	Affymetrix [319769] (imputed)	N
613	chr6_mcf_hap5	3768285	3768286	rs9268560	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	BTNL2	rs9268560-C	NR	1E-10		0.0201058	[0.014-0.026] unit decrease	Affymetrix [323858] (imputed)	N
613	chr6_mcf_hap5	3768285	3768286	rs9268560	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	BTNL2	rs9268560-C	NR	1E-15		0.0224411	[0.017-0.028] unit decrease	Affymetrix [319769] (imputed)	N
613	chr6_mcf_hap5	3768285	3768286	rs9268560	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	BTNL2	rs9268560-C	NR	4E-9		0.0183123	[0.012-0.024] unit decrease	Affymetrix [127266] (imputed)	N
613	chr6_mcf_hap5	3768285	3768286	rs9268560	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	BTNL2	rs9268560-C	NR	3E-15		0.0220981	[0.017-0.028] unit increase	Affymetrix [321016] (imputed)	N
613	chr6_mcf_hap5	3768285	3768286	rs9268560	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	BTNL2	rs9268560-C	NR	1E-17		0.0260901	[0.02-0.032] unit increase	Affymetrix [323123] (imputed)	N
613	chr6_mcf_hap5	3768316	3768317	rs28732209	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	334,468 European ancestry, NR ancestry individuals	NA	6p21.32		rs28732209-?	NR	5E-8				Affymetrix [NR] (imputed)	N
613	chr6_mcf_hap5	3768318	3768319	rs3135364	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C4A;C4B	5,353 Icelandic ancestry individuals	NA	6p21.32		rs3135364-G	0.2232	3E-39		0.289407	[0.25-0.33] unit decrease	Illumina [7506463] (imputed)	N
613	chr6_mcf_hap5	3768318	3768319	rs3135364	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	6p21.32	NR	rs3135364-G	0.221478	4E-13		0.0590942	[0.043-0.075] unit increase	Affymetrix [17914406] (imputed)	N
613	chr6_mcf_hap5	3768421	3768422	rs3135363	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	BTNL2	rs3135363-G	NR	2E-11		0.0237256	[0.017-0.031] unit decrease	Affymetrix [323858] (imputed)	N
613	chr6_mcf_hap5	3768421	3768422	rs3135363	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	BTNL2	rs3135363-G	NR	1E-10		0.022911	[0.016-0.03] unit decrease	Affymetrix [127266] (imputed)	N
613	chr6_mcf_hap5	3768421	3768422	rs3135363	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on CD33- HLA DR+	1,635 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs3135363-G	0.17311	2E-13		0.3649	[0.27-0.46] unit increase	Illumina [16999305] (imputed)	N
613	chr6_mcf_hap5	3768421	3768422	rs3135363	24282030	Pan L	2013-11-28	Hum Mol Genet	A genome-wide association study identifies polymorphisms in the HLA-DR region associated with non-response to hepatitis B vaccination in Chinese Han populations.	Hepatitis B vaccine response	108 Han Chinese ancestry high-responder cases, 77 Han Chinese ancestry non-responder controls	1,336 Han Chinese ancestry high-responder cases, 420 Han Chinese ancestry non-responder controls	6p21.32	HLA-DR	rs3135363-?	NR	8E-7		1.51	[1.28-1.78]	Illumina [588026]	N
613	chr6_mcf_hap5	3768421	3768422	rs3135363	23321320	Urabe Y	2013-01-12	J Hepatol	A genome-wide association study of HCV-induced liver cirrhosis in the Japanese population identifies novel susceptibility loci at the MHC region.	Hepatitis C induced liver cirrhosis	682 Japanese ancestry cases, 1,045 Japanese ancestry controls	936 Japanese ancestry cases, 3,809 Japanese ancestry controls	6p21.32	intergenic	rs3135363-C	0.702	1E-10		1.37	[1.24-1.51]	Illumina [431618]	N
613	chr6_mcf_hap5	3768421	3768422	rs3135363	21764829	Png E	2011-07-15	Hum Mol Genet	A genome-wide association study of hepatitis B vaccine response in an Indonesian population reveals multiple independent risk variants in the HLA region.	Hepatitis B vaccine response	1,683 Indonesian ancestry individuals	1,931 Indonesian ancestry individuals	6p21.32	HLA-DR	rs3135363-?	NR	7E-22		1.53	[1.35-1.74]	Illumina [455508]	N
613	chr6_mcf_hap5	3769105	3769106	rs2894255	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	BTNL2	rs2894255-T	NR	2E-17		0.0362414	[0.028-0.045] unit decrease	Affymetrix [323858] (imputed)	N
613	chr6_mcf_hap5	3769105	3769106	rs2894255	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	BTNL2	rs2894255-T	NR	7E-16		0.0344273	[0.026-0.043] unit decrease	Affymetrix [127266] (imputed)	N
613	chr6_mcf_hap5	3769105	3769106	rs2894255	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p21.32	BTNL2	rs2894255-T	NR	2E-11		0.0284523	[0.02-0.037] unit decrease	Affymetrix [323858] (imputed)	N
613	chr6_mcf_hap5	3769362	3769363	rs3135359	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p21.32	HLA-DRADQA1	rs3135359-C	0.71	9E-21		1.21	[1.18-1.24]	Illumina [at least 560000] (imputed)	N
613	chr6_mcf_hap5	3771514	3771515	rs6935999	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.32	NR	rs6935999-A	0.011	8E-8	(women)	0.839311	[0.54-1.14] unit increase	Affymetrix [up to 8900000] (imputed)	N
613	chr6_mcf_hap5	3771514	3771515	rs6935999	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.32	NR	rs6935999-A	0.011	3E-11		0.563282	[0.4-0.73] unit increase	Affymetrix [up to 8900000] (imputed)	N
613	chr6_mcf_hap5	3771634	3771635	rs3135353	33941608	Khan A	2021-05-03	J Am Soc Nephrol	Medical Records-Based Genetic Studies of the Complement System.	Complement C4 levels	3,247 European ancestry individuals, 600 African ancestry individuals, 151 East Asian ancestry individuals	NA	6p21.32	C4	rs3135353-C	0.15	2E-33	(EA)	0.4	[0.34-0.45] unit increase	NR [NR] (imputed)	N
613	chr6_mcf_hap5	3771634	3771635	rs3135353	33941608	Khan A	2021-05-03	J Am Soc Nephrol	Medical Records-Based Genetic Studies of the Complement System.	Complement C4 levels	3,247 European ancestry individuals, 600 African ancestry individuals, 151 East Asian ancestry individuals	NA	6p21.32	C4	rs3135353-C	0.12	5E-35		0.4	[0.34-0.45] unit increase	NR [NR] (imputed)	N
613	chr6_mcf_hap5	3771738	3771739	rs3135350	24962563	Rubicz R	2014-07-01	Genet Epidemiol	Genome-wide genetic and transcriptomic investigation of variation in antibody response to dietary antigens.	Food antigen IgG levels	1,367 Mexican Americans from 63 families	NA	6p21.32	NOTCH4, HLA-DRA, BTNL2	rs3135350-G	0.046	9E-8	(Gliadin)	0.51	[NR] unit increase	Illumina [944565] (imputed)	N
613	chr6_mcf_hap5	3774400	3774401	rs9268576	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p21.32	HLA-DRA	rs9268576-C	0.359	2E-8		0.111	[0.072-0.15] unit decrease	Affymetrix, Illumina [7374092] (imputed)	N
613	chr6_mcf_hap5	3774400	3774401	rs9268576	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on CD33+ HLA DR+ CD14dim	1,578 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9268576-C	0.46709	3E-10		0.262	[0.18-0.34] unit decrease	Illumina [16958370] (imputed)	N
613	chr6_mcf_hap5	3774400	3774401	rs9268576	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on CD33+ HLA DR+ CD14-	1,579 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9268576-C	0.46711	3E-20		0.3825	[0.3-0.46] unit decrease	Illumina [16961968] (imputed)	N
613	chr6_mcf_hap5	3774415	3774416	rs2105903	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in diabetes	70,762 European ancestry individuals, 20,967 African American individuals	NA	6p21.32	HLA-DRA	rs2105903-A	0.838	4E-12		0.821	[0.59-1.05] unit increase	Affymetrix [NR] (imputed)	N
613	chr6_mcf_hap5	3774485	3774486	rs3129843	26362759	Rothwell S	2015-09-11	Ann Rheum Dis	Dense genotyping of immune-related loci in idiopathic inflammatory myopathies confirms HLA alleles as the strongest genetic risk factor and suggests different genetic background for major clinical subgroups.	Idiopathic inflammatory myopathy	2,556 European ancestry cases, 15,651 European ancestry controls		6p21.32	HLA	rs3129843-G	0.11	9E-133		2.74	[2.53-2.97]	Illumina [90536]	N
613	chr6_mcf_hap5	3774485	3774486	rs3129843	26362759	Rothwell S	2015-09-11	Ann Rheum Dis	Dense genotyping of immune-related loci in idiopathic inflammatory myopathies confirms HLA alleles as the strongest genetic risk factor and suggests different genetic background for major clinical subgroups.	Dermatomyositis or juvenile dermatomyositis	879 European dermatomyositis cases, 15,651 European juvenile dermatomyositis ancestry controls		6p21.32	HLA	rs3129843-G		2E-48		2.18	[1.97-2.42]	Illumina [90536]	N
613	chr6_mcf_hap5	3774904	3774905	rs78566116	29782485	Rueger S	2018-05-21	PLoS Genet	Evaluation and application of summary statistic imputation to discover new height-associated loci.	Height	253,288 European ancestry individuals	336,474 European ancestry individuals	6p21.32	intergenic	rs78566116-T	0.0766992859032002	4E-12		0.011949114	unit decrease	NR [9276018] (imputed)	N
613	chr6_mcf_hap5	3776059	3776060	rs3129849	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PRTN3	5,367 Icelandic ancestry individuals	NA	6p21.32		rs3129849-A	0.2684	2E-16		0.176044	[0.13-0.22] unit increase	Illumina [7506463] (imputed)	N
613	chr6_mcf_hap5	3776558	3776559	rs3129852	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DRA	rs3129852-G	NR	3E-8		0.019398	[0.013-0.026] unit decrease	Affymetrix [319769] (imputed)	N
613	chr6_mcf_hap5	3776637	3776638	rs17202717	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs17202717-T	0.2	9E-9		4.33	[3.31-5.67]	Illumina [NR] (imputed)	N
613	chr6_mcf_hap5	3777422	3777423	rs3129853	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Prostate cancer	7,438 White British ancestry cases, 118,206 White British ancestry controls	NA	6p21.32		rs3129853-?	NR	2E-6		0.913903	[0.88-0.95]	NR [680312]	N
613	chr6_mcf_hap5	3777958	3777959	rs4321864	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DRA	rs4321864-A	NR	1E-10		0.019351	[0.013-0.025] unit increase	Affymetrix [319769] (imputed)	N
613	chr6_mcf_hap5	3777958	3777959	rs4321864	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DRA	rs4321864-A	NR	5E-10		0.0188026	[0.013-0.025] unit increase	Affymetrix [319769] (imputed)	N
613	chr6_mcf_hap5	3777958	3777959	rs4321864	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DRA	rs4321864-A	NR	2E-11		0.0204042	[0.014-0.026] unit increase	Affymetrix [321169] (imputed)	N
613	chr6_mcf_hap5	3777958	3777959	rs4321864	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on Hematopoietic Stem Cell	1,634 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs4321864-A	0.29062	4E-9		0.2523	[0.17-0.34] unit increase	Illumina [16999215] (imputed)	N
613	chr6_mcf_hap5	3777958	3777959	rs4321864	26450422	DeLorenze GN	2015-10-08	J Infect Dis	Polymorphisms in HLA Class II Genes Are Associated With Susceptibility to Staphylococcus aureus Infection in a White Population.	Staphylococcus aureus infection	4,701 European ancestry cases, 45,344 European ancestry controls	NA	6p21.32	HLA-DRA	rs4321864-A	NR	9E-8		1.13	[NR]	Affymetrix [at least 584535] (imputed)	N
613	chr6_mcf_hap5	3779709	3779710	rs3129859	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	6p21.32	NR	rs3129859-G	0.67	1E-12		1.06	[1.04-1.08]	Illumina [20370935] (imputed)	N
613	chr6_mcf_hap5	3779709	3779710	rs3129859	28130311	Tan W	2017-01-27	Gut	Genome-wide association study identifies HLA-DR variants conferring risk of HBV-related acute-on-chronic liver failure.	Acute-on-chronic liver failure in hepatitis B	389 Chinese ancestry cases, 391 Chinese ancestry controls	901 Chinese ancestry cases,  1,686 Chinese ancestry controls	6p21.32	HLA-DQB1, HLA-DRA	rs3129859-C	0.15	7E-19		1.83	[1.60-2.09]	Affymetrix [654960]	N
613	chr6_mcf_hap5	3779806	3779807	rs17496307	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs17496307-T	0.2	9E-9		4.33	[3.31-5.67]	Illumina [NR] (imputed)	N
613	chr6_mcf_hap5	3779849	3779850	rs3129860	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CFTR	5,361 Icelandic ancestry individuals	NA	6p21.32		rs3129860-A	0.2255	1E-13		0.165583	[0.12-0.21] unit increase	Illumina [7506463] (imputed)	N
613	chr6_mcf_hap5	3779849	3779850	rs3129860	23321320	Urabe Y	2013-01-12	J Hepatol	A genome-wide association study of HCV-induced liver cirrhosis in the Japanese population identifies novel susceptibility loci at the MHC region.	Hepatitis C induced liver cirrhosis	682 Japanese ancestry cases, 1,045 Japanese ancestry controls	936 Japanese ancestry cases, 3,809 Japanese ancestry controls	6p21.32	intergenic	rs3129860-A	0.231	1E-9		1.36	[1.22-1.49]	Illumina [431618]	N
613	chr6_mcf_hap5	3779987	3779988	rs3135338	20159113	Jakkula E	2010-02-12	Am J Hum Genet	Genome-wide association study in a high-risk isolate for multiple sclerosis reveals associated variants in STAT3 gene.	Multiple sclerosis	68 Finland founder cases, 136 Finland founder controls	83 Finland founder cases, 365 Finland founder controls 3,285 European ancestry cases, 6,379 European ancestry controls, 1,202 cases, 3,399 controls	6p21.32	HLA	rs3135338-A	0.13	2E-25		3.43	[NR]	Illumina [297343]	N
613	chr6_mcf_hap5	3780033	3780034	rs9268610	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on CD33dim HLA DR+ CD11b-	1,635 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9268610-C	0.23837	2E-14		0.3692	[0.28-0.46] unit decrease	Illumina [16999305] (imputed)	N
613	chr6_mcf_hap5	3781660	3781661	rs9268615	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DRA	rs9268615-A	NR	5E-9		0.0185721	[0.012-0.025] unit decrease	Affymetrix [323123] (imputed)	N
613	chr6_mcf_hap5	3781890	3781891	rs28732213	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs28732213-A	0.041	4E-80	(Ubiquitin carboxyl-terminal hydrolase 25, USP25.9215.117.3)	1.13	[1.01-1.25] unit increase	Affymetrix [10572788] (imputed)	N
613	chr6_mcf_hap5	3783165	3783166	rs3129868	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	6p21.32	NR	rs3129868-?	NR	6E-10		0.077	[0.052-0.101] unit increase	Illumina [at least 560000] (imputed)	N
613	chr6_mcf_hap5	3784652	3784653	rs9268628	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on HLA DR+ Natural Killer	2,971 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9268628-C	0.60641	2E-23		0.2999	[0.24-0.36] unit decrease	Illumina [17967059] (imputed)	N
613	chr6_mcf_hap5	3785118	3785119	rs3129871	23472185	Mero IL	2013-03-05	PLoS One	Oligoclonal band status in Scandinavian multiple sclerosis patients is associated with specific genetic risk alleles.	Multiple sclerosis (OCB status)	1,367 European ancestry OCB positive cases, 161 European ancestry OCB negative cases, 428 European ancestry controls	NA	6p21.32	HLA-DRA	rs3129871-?	NR	1E-16	(OCB positive vs. controls)	1.98	[1.68-2.32]	Illumina [495970]	N
613	chr6_mcf_hap5	3785118	3785119	rs3129871	23472185	Mero IL	2013-03-05	PLoS One	Oligoclonal band status in Scandinavian multiple sclerosis patients is associated with specific genetic risk alleles.	Multiple sclerosis (OCB status)	1,367 European ancestry OCB positive cases, 161 European ancestry OCB negative cases	3,029 European ancestry OCB positive cases, 374 European ancestry OCB negative cases	6p21.32	HLA-DRA	rs3129871-?	NR	6E-15		1.72	[1.59-1.86]	Illumina [495970]	N
613	chr6_mcf_hap5	3785249	3785250	rs9268633	33143745	Andlauer TFM	2020-11-04	BMC Med	Treatment- and population-specific genetic risk factors for anti-drug antibodies against interferon-beta: a GWAS.	Neutralising antibody response to interferon beta therapy in multiple sclerosis (antibody titre; IFN?-1a subcutaneous and intramuscular)	up to 2,000 German and Swedish ancestry individuals	up to 757 German and Swedish ancestry individuals	6p21.32		rs9268633-A	0.39	1E-17		0.2	[-0.0392-0.0392] unit increase	Illumina [8550834] (imputed)	N
613	chr6_mcf_hap5	3786075	3786076	rs2395179	29534301	Nishida N	2018-03-13	Hepatology	Key HLA-DRB1-DQB1 haplotypes and role of the BTNL2 gene for response to a hepatitis B vaccine.	Response to hepatitis B vaccine	107 Japanese ancestry low responder individuals, 351 Japanese ancestry intermediate responder individuals, 735 Japanese ancestry high responder individuals	NA	6p21.32	HLA-DRA	rs2395179-?		5E-14		0.221	unit decrease	Affymetrix [427664]	N
613	chr6_mcf_hap5	3786817	3786818	rs9268644	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DRA	rs9268644-A	NR	4E-13		0.022277	[0.016-0.028] unit increase	Affymetrix [323123] (imputed)	N
613	chr6_mcf_hap5	3786817	3786818	rs9268644	28425483	Qiu F	2017-04-20	Nat Commun	A genome-wide association study identifies six novel risk loci for primary biliary cholangitis.	Primary biliary cholangitis	1,122 Han Chinese ancestry cases, 4,036 Han Chinese ancestry controls	907 Han Chinese ancestry cases, 2,127 Han Chinese ancestry controls	6p21.32	HLA-DRA	rs9268644-?	0.823	8E-31		1.9607843	[1.75-2.22]	Illumina [776516]	N
613	chr6_mcf_hap5	3787268	3787269	rs3135394	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p21.32	HLA-DRA	rs3135394-G	0.344	3E-33				Illumina [118177]	N
613	chr6_mcf_hap5	3787268	3787269	rs3135394	24097067	Lessard CJ	2013-11-01	Nat Genet	Variants at multiple loci implicated in both innate and adaptive immune responses are associated with Sjogren's syndrome.	Sjogren's syndrome	395 European ancestry cases, 1,975 European ancestry controls	1,243 European ancestry cases, 4,779 European ancestry controls	6p21.32	HLA-DRA	rs3135394-G	0.11	5E-113		3.52	[3.02-4.10]	Illumina [648937]	N
613	chr6_mcf_hap5	3787268	3787269	rs3135394	19838195	Gateva V	2009-11-01	Nat Genet	A large-scale replication study identifies TNIP1, PRDM1, JAZF1, UHRF1BP1 and IL10 as risk loci for systemic lupus erythematosus.	Systemic lupus erythematosus	1,310 European ancestry cases, 7,859 European ancestry controls	1,963 European ancestry cases, 4,329 European ancestry controls	6p21.32	HLA-DRB1	rs3135394-G	0.1	2E-60		1.98	[1.84-2.14]	Illumina [~ 2100000] (imputed)	N
613	chr6_mcf_hap5	3787298	3787299	rs9268645	19430480	Barrett JC	2009-05-10	Nat Genet	Genome-wide association study and meta-analysis find that over 40 loci affect risk of type 1 diabetes.	Type 1 diabetes	7,514 European ancestry cases, 9,045 European ancestry controls	4,267 European ancestry cases, 4,670 European ancestry controls, 4,342 European ancestry trios from 2,319 families	6p21.32	MHC	rs9268645-?	NR	1E-100				Affymetrix, Illumina [841622] (imputed)	N
613	chr6_mcf_hap5	3787678	3787679	rs3129879	34212547	An J	2021-07-01	Allergy Asthma Immunol Res	Genome-Wide Association Study of Korean Asthmatics: A Comparison With UK Asthmatics.	Adult asthma	1,386 Korean ancestry cases, 5,205 Korean ancestry controls	NA	6p21.32		rs3129879-A	0.34	3E-6		0.78	[0.71-0.87]	Affymetrix [4922160] (imputed)	N
613	chr6_mcf_hap5	3787827	3787828	rs9268652	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Hepatitis B	1,425 European ancestry cases, 218,180 European ancestry controls	NA	6p21.32	HLA-DRA	rs9268652-G	0.74	3E-9		1.32	[1.25-1.38]	Illumina [at least 560000] (imputed)	N
613	chr6_mcf_hap5	3788301	3788302	rs3129882	24511991	Hill-Burns EM	2014-02-10	BMC Genomics	Identification of a novel Parkinson's disease locus via stratified genome-wide association study.	Parkinson's disease	1,565 European ancestry sproadic Parkinson's disease cases, 435 European ancestry familial Parkinson's disease cases, 1,986 European ancestry controls	1,528 European ancestry sporadic Parkinson's disease cases, 707 European ancestry familial Parkinson's disease cases, 796 European ancestry controls	6p21.32	HLA	rs3129882-G	0.395	5E-10	(Sporadic)	1.38	[1.24-1.52]	Illumina [811597]	N
613	chr6_mcf_hap5	3788301	3788302	rs3129882	24511991	Hill-Burns EM	2014-02-10	BMC Genomics	Identification of a novel Parkinson's disease locus via stratified genome-wide association study.	Parkinson's disease	1,565 European ancestry sproadic Parkinson's disease cases, 435 European ancestry familial Parkinson's disease cases, 1,986 European ancestry controls	1,528 European ancestry sporadic Parkinson's disease cases, 707 European ancestry familial Parkinson's disease cases, 796 European ancestry controls	6p21.32	HLA	rs3129882-G	0.395	3E-8		1.31	[1.19-1.43]	Illumina [811597]	N
613	chr6_mcf_hap5	3788301	3788302	rs3129882	21779181	Gorlova O	2011-07-14	PLoS Genet	Identification of novel genetic markers associated with clinical phenotypes of systemic sclerosis through a genome-wide association strategy.	Systemic sclerosis	2,296 European ancestry cases, 5,172 European ancestry controls	3,175 European ancestry cases, 4,210 European ancestry controls	6p21.32	HLA-DRA	rs3129882-?	0.44	2E-27	(ATA positive)	2.17	[1.88-2.50]	Illumina [NR] (imputed)	N
613	chr6_mcf_hap5	3788301	3788302	rs3129882	20711177	Hamza TH	2010-08-15	Nat Genet	Common genetic variation in the HLA region is associated with late-onset sporadic Parkinson's disease.	Parkinson's disease	2,000 European ancestry cases, 1,986 European ancestry controls	Up to 1,447 cases, 1,468 controls	6p21.32	HLA-DRA	rs3129882-G	0.40	2E-10		1.26	[1.17-1.35]	Illumina [811597]	N
613	chr6_mcf_hap5	3788479	3788480	rs17496549	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs17496549-T	0.2	9E-9		4.33	[3.31-5.67]	Illumina [NR] (imputed)	N
613	chr6_mcf_hap5	3789347	3789348	rs3129886	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Matrix metalloproteinase-10 levels	21,758 European ancestry individuals	9,173 individuals	6p21.32		rs3129886-T	0.25	6E-7		0.0572	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
613	chr6_mcf_hap5	3789462	3789463	rs3129887	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DRA	rs3129887-A	NR	4E-11		0.0236955	[0.017-0.031] unit decrease	Affymetrix [319769] (imputed)	N
613	chr6_mcf_hap5	3789462	3789463	rs3129887	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DRA	rs3129887-A	NR	2E-10		0.0226864	[0.016-0.03] unit decrease	Affymetrix [319769] (imputed)	N
613	chr6_mcf_hap5	3789462	3789463	rs3129887	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DRA	rs3129887-A	NR	2E-12		0.0256	[0.019-0.033] unit decrease	Affymetrix [321169] (imputed)	N
613	chr6_mcf_hap5	3789462	3789463	rs3129887	28062665	Kawashima M	2017-01-05	Hum Mol Genet	Genome-wide association studies identify PRKCB as a novel genetic susceptibility locus for primary biliary cholangitis in the Japanese population.	Primary biliary cholangitis	1,381 Japanese ancestry cases, 1,505 Japanese ancestry controls	512 Japanese ancestry cases, 6,512 Japanese ancestry controls	6p21.32	HLA-DRA, HLA-DRB1	rs3129887-?	NR	2E-29		3.13	[2.54-3.85]	Affymetrix [425290]	N
613	chr6_mcf_hap5	3789712	3789713	rs9268659	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	HLA-DRA	rs9268659-T	NR	2E-9		0.0171616	[0.012-0.023] unit decrease	Affymetrix [321114] (imputed)	N
613	chr6_mcf_hap5	3789712	3789713	rs9268659	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Perceived unattractiveness to mosquitoes	16,576 European ancestry individuals	NA	6p21.32	HLA-DRA	rs9268659-T	0.42	2E-9		0.139734	[0.094-0.186] unit increase	Illumina [7433384] (imputed)	N
613	chr6_mcf_hap5	3789806	3789807	rs8084	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DRA	rs8084-A	NR	3E-21		0.027016	[0.021-0.033] unit decrease	Affymetrix [321169] (imputed)	N
613	chr6_mcf_hap5	3790147	3790148	rs2239805	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.32	HLA-DRA, HLA-DRB9	rs2239805-G	0.169007	1E-12	(EA, Complement C4)	0.4079	[0.3-0.52] unit decrease	Affymetrix [509946]	N
613	chr6_mcf_hap5	3790417	3790418	rs7192	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs7192-T	0.49	3E-9		0.15	[0.11-0.22]	Illumina [NR] (imputed)	N
613	chr6_mcf_hap5	3790417	3790418	rs7192	22541561	Zhao H	2012-04-26	Am J Hum Genet	A genome-wide association study reveals that variants within the HLA region are associated with risk for nonobstructive azoospermia.	Non-obstructive azoospermia	802 Han Chinese ancestry cases, 1,863 Han Chinese ancestry controls	1,424 Han Chinese ancestry cases, 2,713 Han Chinese ancestry controls	6p21.32	HLA-DRA	rs7192-T	0.26	3E-6		1.29	[NR]	Affymetrix, Illumina [912924]	N
613	chr6_mcf_hap5	3790617	3790618	rs2239802	28008999	Ostrowski J	2016-12-23	Sci Rep	Genetic architecture differences between pediatric and adult-onset inflammatory bowel diseases in the Polish population.	Ulcerative colitis	269 Polish ancestry child cases, 259 Polish ancestry adult cases, 582 Polish ancestry controls	121 Polish ancestry child cases, 85 Polish ancestry adult cases, 352 Polish ancestry controls	6p21.32	HLA-DRA	rs2239802-?		2E-7	(Adults)	1.7715251	[1.43-2.19]	Illumina [2612357]	N
613	chr6_mcf_hap5	3791167	3791168	rs4935356	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	6p21.32	HLA-DRA	rs4935356-T	0.756088	8E-22		0.0245501	[0.02-0.03] unit decrease	Affymetrix [NR] (imputed)	N
613	chr6_mcf_hap5	3791174	3791175	rs3135390	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DRA	rs3135390-C	NR	6E-9		0.0224213	[0.015-0.03] unit increase	Affymetrix [323123] (imputed)	N
613	chr6_mcf_hap5	3791214	3791215	rs3177928	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs3177928-A	0.21	2E-8		4.13	[3.16-5.38]	Illumina [NR] (imputed)	N
613	chr6_mcf_hap5	3791214	3791215	rs3177928	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.32	NR	rs3177928-G	NR	1E-9		0.033	unit decrease	Affymetrix [at least 7091467] (imputed)	N
613	chr6_mcf_hap5	3791214	3791215	rs3177928	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.32	NR	rs3177928-G	0.856	5E-7	(EA)	0.03	unit decrease	Affymetrix [at least 7091467] (imputed)	N
613	chr6_mcf_hap5	3791214	3791215	rs3177928	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.32	NR	rs3177928-G	NR	1E-15		0.049	unit decrease	Affymetrix [at least 7091467] (imputed)	N
613	chr6_mcf_hap5	3791214	3791215	rs3177928	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.32	NR	rs3177928-G	0.856	5E-12	(EA)	0.045	unit decrease	Affymetrix [at least 7091467] (imputed)	N
613	chr6_mcf_hap5	3791214	3791215	rs3177928	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.32	NR	rs3177928-G	NR	9E-10		0.038	unit decrease	Affymetrix [at least 7091467] (imputed)	N
613	chr6_mcf_hap5	3791214	3791215	rs3177928	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.32	NR	rs3177928-G	0.856	2E-7	(EA)	0.035	unit decrease	Affymetrix [at least 7091467] (imputed)	N
613	chr6_mcf_hap5	3791214	3791215	rs3177928	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Total cholesterol levels	32,576 East Asian ancestry individuals, 187,365 European ancestry individuals	10,855 Chinese ancestry individuals	6p21.32	HLA	rs3177928-A	0.181	5E-22	(Trans-ethnic initial)	0.0482	[0.038-0.058] unit increase (EA Beta values)	Affymetrix, Illumina [up to 1900000] (imputed)	N
613	chr6_mcf_hap5	3791214	3791215	rs3177928	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	LDL cholesterol levels	32,285 East Asian ancestry individuals, 173,082 European ancestry individuals	8,478 Chinese ancestry individuals	6p21.32	HLA	rs3177928-A	0.181	5E-17	(Trans-ethnic initial)	0.0452	[0.035-0.055] unit increase (EA Beta value)	Affymetrix, Illumina [~ 1900000] (imputed)	N
613	chr6_mcf_hap5	3791214	3791215	rs3177928	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	6p21.32	HLA	rs3177928-A	0.17	3E-17		0.045	[NR] unit increase	NR [NR] (imputed)	N
613	chr6_mcf_hap5	3791214	3791215	rs3177928	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	6p21.32	HLA	rs3177928-A	0.17	1E-21		0.048	[NR] unit increase	NR [NR] (imputed)	N
613	chr6_mcf_hap5	3791214	3791215	rs3177928	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	LDL cholesterol	95,454 European ancestry individuals	NA	6p21.32	HLA	rs3177928-A	0.16	2E-15		1.83	[1.36-2.3] mg/dL increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
613	chr6_mcf_hap5	3791214	3791215	rs3177928	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	Cholesterol, total	100,184 European ancestry individuals	NA	6p21.32	HLA	rs3177928-A	0.16	4E-19		2.31	[1.78-2.84] mg/dL increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
613	chr6_mcf_hap5	3791259	3791260	rs7194	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.32	HLA-DRA	rs7194-A	0.5927	6E-9		0.0221	[0.015-0.03] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
613	chr6_mcf_hap5	3791259	3791260	rs7194	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6p21.32	BTNL2	rs7194-A	0.5927	5E-8		0.0247	[0.016-0.034] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
613	chr6_mcf_hap5	3791259	3791260	rs7194	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.32	HLA-DRA	rs7194-?	0.5927	1E-7				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
613	chr6_mcf_hap5	3791318	3791319	rs7195	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs7195-A	0.49	3E-9		0.15	[0.11-0.22]	Illumina [NR] (imputed)	N
613	chr6_mcf_hap5	3791371	3791372	rs1051336	29857070	Gao J	2018-05-29	J Invest Dermatol	Association study and fine-mapping major histocompatibility complex analysis of pemphigus vulgaris in a Han Chinese population.	Pemphigus vulgaris	240 Han Chinese ancestry cases, 1,031 Han Chinese ancestry controls	252 Han Chinese ancestry cases, 1,852 Han Chinese ancestry controls	6p21.32	NR	rs1051336-?	NR	3E-6	(conditioned on HLA-DRB1*14:04 and rs7454108)	3.03	[NR]	Illumina [802980]	N
613	chr6_mcf_hap5	3791830	3791831	rs3135388	19525953	De Jager PL	2009-06-14	Nat Genet	Meta-analysis of genome scans and replication identify CD6, IRF8 and TNFRSF1A as new multiple sclerosis susceptibility loci.	Multiple sclerosis	2,624 European ancestry cases, 7,220 European ancestry controls	2,215 European ancestry cases, 2,116 European ancestry controls		HLA-DRB1	rs3135388-A	0.22	4E-225		2.75	[2.46-3.07]	Affymetrix, Illumina [~ 2560000] (imputed)	N
613	chr6_mcf_hap5	3791830	3791831	rs3135388	17660530	Hafler DA	2007-07-29	N Engl J Med	Risk alleles for multiple sclerosis identified by a genomewide study.	Multiple sclerosis	931 European ancestry trios, 2,431 European ancestry controls	609 European ancestry trios, 2,322 European ancestry cases, 2,987 European ancestry controls		HLA-DRA	rs3135388-A	0.23	9E-81		1.99	[1.84-2.15]	Affymetrix [334923]	N
613	chr6_mcf_hap5	3791873	3791874	rs2213586	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs2213586-A	0.49	3E-9		0.15	[0.11-0.22]	Illumina [NR] (imputed)	N
613	chr6_mcf_hap5	3791929	3791930	rs2213585	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs2213585-G	0.48	3E-9		0.15	[0.11-0.22]	Illumina [NR] (imputed)	N
613	chr6_mcf_hap5	3792238	3792239	rs2227139	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs2227139-G	0.49	3E-9		0.15	[0.11-0.22]	Illumina [NR] (imputed)	N
613	chr6_mcf_hap5	3792238	3792239	rs2227139	19820697	Soranzo N	2009-10-11	Nat Genet	A genome-wide meta-analysis identifies 22 loci associated with eight hematological parameters in the HaemGen consortium.	Hematological parameters	4,627 European ancestry individuals	9,316 European ancestry individuals	6p21.32	intergenic	rs2227139-G	NR	1E-7	(WBC)	0.02	[0.01-0.03] 10^9/l increase	Affymetrix, Illumina [~ 2110000] (imputed)	N
613	chr6_mcf_hap5	3792324	3792325	rs3129889	22190364	Patsopoulos NA	2011-12-01	Ann Neurol	Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.	Multiple sclerosis	5,545 European ancestry cases, 12,153 European ancestry controls	NA	6p21.32	HLA-DRB1	rs3129889-G	0.20	1E-206		2.97	[NR]	Affymetrix, Illumina [2529394]	N
613	chr6_mcf_hap5	3792336	3792337	rs3763326	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (mother's age at death or mother's attained age)	up to 699,000 individuals	NA	6p21.32	NR	rs3763326-A		5E-6				Illumina [458525]	N
613	chr6_mcf_hap5	3792609	3792610	rs3763327	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs3763327-G	0.49	3E-9		0.15	[0.11-0.22]	Illumina [NR] (imputed)	N
613	chr6_mcf_hap5	3793050	3793051	rs3129890	26272072	Jiang X	2015-08-13	Rheumatology (Oxford)	An Immunochip-based interaction study of contrasting interaction effects with smoking in ACPA-positive versus ACPA-negative rheumatoid arthritis.	ACPA-positive rheumatoid arthritis (smoking interaction)	340 European ancestry never-smoker cases, 493 European ancestry ever-smoker cases, 746 European ancestry never-smoker controls, 994 European ancestry ever-smoker controls	187 European ancestry never-smoker cases, 421 European ancestry ever-smoker cases, 461 European ancestry never-smoker controls, 447 European ancestry ever-smoker controls	6p21.32	NR	rs3129890-?	NR	1E-10	(adjusted for HLA shared epitope)	2.5	[1.89-3.57]	Illumina [133648] (imputed)	N
613	chr6_mcf_hap5	3793050	3793051	rs3129890	21804548	Hirota T	2011-07-31	Nat Genet	Genome-wide association study identifies three new susceptibility loci for adult asthma in the Japanese population.	Asthma	1,532 Japanese ancestry cases, 3,304 Japanese ancestry controls	5,639 Japanese ancestry cases, 24,608 Japanese ancestry controls	6p21.32	HLA-DRA	rs3129890-T	0.61	5E-13		1.15	[1.11-1.20]	Illumina [458847]	N
613	chr6_mcf_hap5	3793064	3793065	rs9268670	33768542	Liu Y	2021-03-26	Clin Pharmacol Ther	Class II HLA Variants Associate with Risk of Pegaspargase Hypersensitivity.	Asparaginase hypersensitivity in acute lymphoblastic leukemia	310 African ancestry individuals, 798 Native American individuals, 387 individuals	NA	6p21.32	NR	rs9268670-T	NR	7E-7		0.56	[NR]	Illumina [NR] (imputed)	N
613	chr6_mcf_hap5	3793064	3793065	rs9268670	33768542	Liu Y	2021-03-26	Clin Pharmacol Ther	Class II HLA Variants Associate with Risk of Pegaspargase Hypersensitivity.	Asparaginase hypersensitivity in acute lymphoblastic leukemia	310 African ancestry individuals, 798 Native American individuals, 112 Asian ancestry individuals, 387 individuals	NA	6p21.32	HLA-DRA	rs9268670-T	NR	2E-7		0.55		Illumina [NR] (imputed)	N
613	chr6_mcf_hap5	3793067	3793068	rs9268671	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs9268671-A	0.339438	4E-8		0.023014	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
613	chr6_mcf_hap5	3793067	3793068	rs9268671	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DRA	rs9268671-A	NR	4E-19		0.0265032	[0.021-0.032] unit decrease	Affymetrix [319769] (imputed)	N
613	chr6_mcf_hap5	3793067	3793068	rs9268671	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DRA	rs9268671-A	NR	1E-12		0.0233694	[0.017-0.03] unit decrease	Affymetrix [323858] (imputed)	N
613	chr6_mcf_hap5	3793067	3793068	rs9268671	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DRA	rs9268671-A	NR	5E-18		0.0256545	[0.02-0.031] unit decrease	Affymetrix [319769] (imputed)	N
613	chr6_mcf_hap5	3793067	3793068	rs9268671	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	HLA-DRA	rs9268671-A	NR	4E-11		0.0217286	[0.015-0.028] unit decrease	Affymetrix [127266] (imputed)	N
613	chr6_mcf_hap5	3793067	3793068	rs9268671	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DRA	rs9268671-A	NR	2E-11		0.0199636	[0.014-0.026] unit increase	Affymetrix [321016] (imputed)	N
613	chr6_mcf_hap5	3793067	3793068	rs9268671	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DRA	rs9268671-A	NR	3E-22		0.0312717	[0.025-0.038] unit increase	Affymetrix [323123] (imputed)	N
613	chr6_mcf_hap5	3793067	3793068	rs9268671	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	6p21.32	HLA-DRA	rs9268671-G	0.661005	1E-11		0.018096138	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
613	chr6_mcf_hap5	3793446	3793447	rs9268677	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DRA	rs9268677-A	NR	4E-15		0.0222453	[0.017-0.028] unit increase	Affymetrix [319769] (imputed)	N
613	chr6_mcf_hap5	3793446	3793447	rs9268677	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DRA	rs9268677-A	NR	1E-14		0.0218771	[0.016-0.027] unit increase	Affymetrix [319769] (imputed)	N
613	chr6_mcf_hap5	3793855	3793856	rs3129891	26272072	Jiang X	2015-08-13	Rheumatology (Oxford)	An Immunochip-based interaction study of contrasting interaction effects with smoking in ACPA-positive versus ACPA-negative rheumatoid arthritis.	ACPA-positive rheumatoid arthritis (smoking interaction)	340 European ancestry never-smoker cases, 493 European ancestry ever-smoker cases, 746 European ancestry never-smoker controls, 994 European ancestry ever-smoker controls	187 European ancestry never-smoker cases, 421 European ancestry ever-smoker cases, 461 European ancestry never-smoker controls, 447 European ancestry ever-smoker controls	6p21.32	NR	rs3129891-?	NR	2E-9	(adjusted for HLA shared epitope)	2.5	[1.89-3.7]	Illumina [133648] (imputed)	N
613	chr6_mcf_hap5	3793928	3793929	rs9469112	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	6p21.32	HLA-DRA	rs9469112-T	0.1734	1E-10		6.4424515	NR z-unit increase	Affymetrix, Illumina [up to 10847151] (imputed)	N
613	chr6_mcf_hap5	3793986	3793987	rs28895028	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs28895028-A	0.21	2E-8		4.13	[3.16-5.38]	Illumina [NR] (imputed)	N
613	chr6_mcf_hap5	3794633	3794634	rs12529093	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs12529093-G	0.21	2E-8		4.13	[3.16-5.38]	Illumina [NR] (imputed)	N
613	chr6_mcf_hap5	3794750	3794751	rs13209234	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs13209234-A	0.21	2E-8		4.13	[3.16-5.38]	Illumina [NR] (imputed)	N
613	chr6_mcf_hap5	3794855	3794856	rs13209059	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs13209059-G	0.21	2E-8		4.13	[3.16-5.38]	Illumina [NR] (imputed)	N
613	chr6_mcf_hap5	3796005	3796006	rs28895057	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs28895057-G	0.098	1E-15	(Ubiquitin carboxyl-terminal hydrolase 25, USP25.9215.117.3)	0.39	[0.29-0.49] unit increase	Affymetrix [10572788] (imputed)	N
613	chr6_mcf_hap5	3796469	3796470	rs6937167	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.32	NR	rs6937167-AT	0.01	3E-9	(women)	1.02959	[0.7-1.36] unit increase	Affymetrix [up to 8900000] (imputed)	N
613	chr6_mcf_hap5	3796706	3796707	rs6937545	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DRA	rs6937545-A	NR	3E-16		0.0268745	[0.02-0.033] unit decrease	Affymetrix [323858] (imputed)	N
613	chr6_mcf_hap5	3796706	3796707	rs6937545	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	HLA-DRA	rs6937545-A	NR	4E-14		0.0248417	[0.018-0.031] unit decrease	Affymetrix [127266] (imputed)	N
613	chr6_mcf_hap5	3798143	3798144	rs28895103	33649182	Penova M	2021-03-01	Proc Natl Acad Sci U S A	Genome wide association study of HTLV-1-associated myelopathy/tropical spastic paraparesis in the Japanese population.	HTLV-1 associated myelopathy	731 Japanese ancestry cases, 846 Japanese ancestry controls	NA	6p21.32		rs28895103-G	0.95	1E-8		0.44	[0.33-0.58]	Illumina [126394]	N
613	chr6_mcf_hap5	3798638	3798639	rs3135384	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	Systemic lupus erythematosus	1,639 East Asian ancestry cases, 2,410 East Asian ancestry controls	NA			rs3135384-G	NR	7E-26		0.5329	[0.43-0.63] unit decrease	Illumina [NR] (imputed)	N
613	chr6_mcf_hap5	3798858	3798859	rs7754768	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs7754768-C	0.49	7E-10		0.14	[0.10-0.20]	Illumina [NR] (imputed)	N
613	chr6_mcf_hap5	3798878	3798879	rs9268775	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	6p21.32	HLA-DRA	rs9268775-T	0.0541	3E-6		0.0884	[0.052-0.125] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
613	chr6_mcf_hap5	3799176	3799177	rs9268781	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DRB9	rs9268781-T	NR	5E-17		0.0247953	[0.019-0.031] unit increase	Affymetrix [321016] (imputed)	N
613	chr6_mcf_hap5	3799534	3799535	rs9268786	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	6p21.32		rs9268786-C	NR	3E-28		0.0241	[0.02-0.028] unit increase	Affymetrix, Illumina [20529698] (imputed)	N
613	chr6_mcf_hap5	3799622	3799623	rs111255178	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.32	HLA-DRB9	rs111255178-T	0.1435	3E-6		0.0558	[0.032-0.079] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
613	chr6_mcf_hap5	3799752	3799753	rs9268791	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD25 on CD28+ CD4+ T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9268791-C	0.74777	1E-10		0.2077	[0.14-0.27] unit decrease	Illumina [17954496] (imputed)	N
613	chr6_mcf_hap5	3800148	3800149	rs3129897	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	HLA-DRB9	rs3129897-A	0.156	2E-29	(Interleukin-21, IL21.7124.18.3)	0.37	[0.31-0.43] unit decrease	Affymetrix [10572788] (imputed)	N
613	chr6_mcf_hap5	3800183	3800184	rs28895136	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs28895136-C	0.21	2E-8		4.13	[3.16-5.38]	Illumina [NR] (imputed)	N
613	chr6_mcf_hap5	3800870	3800871	rs2097442	34642315	Ferreiro-Iglesias A	2021-10-12	Nat Commun	Germline determinants of humoral immune response to HPV-16 protect against oropharyngeal cancer.	Oropharynx cancer and human papilloma virus 16 negative oropharyngeal cancer	2,359 European ancestry cases, 565 European ancestry controls	NA	6p21.32		rs2097442-A	NR	1E-6		1.2355		Illumina [up to 7574753] (imputed)	N
613	chr6_mcf_hap5	3800870	3800871	rs2097442	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Non-Hodgkin's lymphoma	2,400 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs2097442-A	NR	3E-19		1.3187393	NR	Affymetrix [7846216] (imputed)	N
614	chr6_mcf_hap5	3802196	3802197	rs140302846	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	6p21.32	NR	rs140302846-?	NR	1E-15				Affymetrix [~ 8270000] (imputed)	N
614	chr6_mcf_hap5	3802196	3802197	rs140302846	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs140302846-?	NR	7E-13				Affymetrix [~ 8270000] (imputed)	N
614	chr6_mcf_hap5	3802603	3802604	rs9268807	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	HLA	rs9268807-C	0.208	5E-117		1.604	[1.56-1.65]	Illumina [11270530] (imputed)	N
614	chr6_mcf_hap5	3802719	3802720	rs13220657	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs13220657-T	0.21	2E-8		4.13	[3.16-5.38]	Illumina [NR] (imputed)	N
614	chr6_mcf_hap5	3803058	3803059	rs9268811	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DRB9	rs9268811-T	NR	1E-14		0.0222291	[0.017-0.028] unit increase	Affymetrix [321169] (imputed)	N
614	chr6_mcf_hap5	3803282	3803283	rs9268813	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	6p21.32	NR	rs9268813-?	NR	8E-14				Affymetrix [~ 8270000] (imputed)	N
614	chr6_mcf_hap5	3803282	3803283	rs9268813	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.32	NR	rs9268813-?	NR	8E-15				Affymetrix [~ 8270000] (imputed)	N
614	chr6_mcf_hap5	3803282	3803283	rs9268813	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs9268813-?	NR	1E-17				Affymetrix [~ 8270000] (imputed)	N
614	chr6_mcf_hap5	3803570	3803571	rs7763262	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	6p21.32	HLA-DQB1, HLA-DQA1, HLA-DRB1	rs7763262-C	0.72	1E-10	(East Asian)	1.3	[NR]	Illumina [> 1000000] (imputed)	N
614	chr6_mcf_hap5	3803570	3803571	rs7763262	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	6p21.32	HLA-DQB1, HLA-DQA1, HLA-DRB1	rs7763262-C	0.69	2E-38		1.41	[NR]	Illumina [> 1000000] (imputed)	N
614	chr6_mcf_hap5	3803570	3803571	rs7763262	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	6p21.32	HLA-DQB1, HLA-DQA1, HLA-DRB1	rs7763262-C	0.69	1E-30	(EA)	1.49	[NR]	Illumina [> 1000000] (imputed)	N
614	chr6_mcf_hap5	3803993	3803994	rs28895205	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs28895205-G	0.21	2E-8		4.13	[3.16-5.38]	Illumina [NR] (imputed)	N
614	chr6_mcf_hap5	3804176	3804177	rs7744304	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DRB9	rs7744304-G	NR	9E-27		0.0345924	[0.028-0.041] unit increase	Affymetrix [323123] (imputed)	N
614	chr6_mcf_hap5	3804451	3804452	rs41291794	27927641	Ombrello MJ	2016-12-07	Ann Rheum Dis	Genetic architecture distinguishes systemic juvenile idiopathic arthritis from other forms of juvenile idiopathic arthritis: clinical and therapeutic implications.	Systemic juvenile idiopathic arthritis	178 European ancestry cases, 434 European ancestry controls, 81 Hispanic/Latin American cases, 177 Hispanic/Latin American controls, 511 cases, 6,336 controls	NA	6p21.32	HLA-DRA	rs41291794-?		4E-15	(Additive)	2.1	[1.80-2.60]	Illumina [5600610] (imputed)	N
614	chr6_mcf_hap5	3804672	3804673	rs6457592	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DRB9	rs6457592-C	NR	2E-10		0.0179035	[0.012-0.023] unit decrease	Affymetrix [321016] (imputed)	N
614	chr6_mcf_hap5	3805695	3805696	rs113164910	27668658	Iotchkova V	2016-11-01	Nat Genet	Discovery and refinement of genetic loci associated with cardiometabolic risk using dense imputation maps.	Cardiometabolic and hematological traits	up to 35,981 European ancestry individuals	up to 102,505 European ancestry individuals	6p21.32	HLA-DRA	rs113164910-AAC		4E-54	(WBC)	0.008	[0.008-0.008] unit increase	Affymetrix, Illumina [17000000] (imputed)	N
614	chr6_mcf_hap5	3805790	3805791	rs1547422	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD45 on CD4+ T cell	3,113 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs1547422-G	0.77074	1E-9		0.204	[0.14-0.27] unit decrease	Illumina [18030777] (imputed)	N
614	chr6_mcf_hap5	3805870	3805871	rs1548306	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycoprotein acetyls levels	115,082 European ancestry individuals	NA	6p21.32		rs1548306-A	0.337505	3E-30		0.0494261	[0.041-0.058] unit decrease	NR [11722792] (imputed)	N
614	chr6_mcf_hap5	3805870	3805871	rs1548306	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA	6p21.32	NR	rs1548306-?	NR	9E-7		0.0374	[0.023-0.052] unit increase	Illumina [at least 560000] (imputed)	N
614	chr6_mcf_hap5	3805870	3805871	rs1548306	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	6p21.32	Intergenic	rs1548306-T	NR	6E-10		0.0234279	[0.016-0.031] unit decrease	Illumina [13519193] (imputed)	N
614	chr6_mcf_hap5	3805870	3805871	rs1548306	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.32	Intergenic	rs1548306-T	NR	1E-11	(women)	0.0332253	[0.024-0.043] unit decrease	Illumina [13520550] (imputed)	N
614	chr6_mcf_hap5	3805870	3805871	rs1548306	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.32	HLA-DRA, HLA-DRB5	rs1548306-T	0.634	9E-14		0.0256004	[0.019-0.032] unit decrease	Illumina [13520550] (imputed)	N
614	chr6_mcf_hap5	3805870	3805871	rs1548306	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	6p21.32	HLA-DRA, HLA-DRB5	rs1548306-T	0.634	5E-29		0.0446701	[0.037-0.052] unit decrease	Illumina [13520550] (imputed)	N
614	chr6_mcf_hap5	3806072	3806073	rs28732229	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs28732229-T	0.21	2E-8		4.13	[3.16-5.38]	Illumina [NR] (imputed)	N
614	chr6_mcf_hap5	3806439	3806440	rs9268831	33558538	Gebresilase T	2021-02-08	Sci Rep	Replication of HLA class II locus association with susceptibility to podoconiosis in three Ethiopian ethnic groups.	Podoconiosis	1,137 Ethiopian ancestry cases, 1,152 Ethiopian ancestry controls	NA	6p21.32	HLA-DRB9	rs9268831-T	0.46	2E-9				Illumina [2201695]	N
614	chr6_mcf_hap5	3806439	3806440	rs9268831	29534301	Nishida N	2018-03-13	Hepatology	Key HLA-DRB1-DQB1 haplotypes and role of the BTNL2 gene for response to a hepatitis B vaccine.	Response to hepatitis B vaccine	107 Japanese ancestry low responder individuals, 351 Japanese ancestry intermediate responder individuals, 735 Japanese ancestry high responder individuals	NA	6p21.32	HLA-DRAB5	rs9268831-?		1E-13		0.192	unit decrease	Affymetrix [427664]	N
614	chr6_mcf_hap5	3806480	3806481	rs9268832	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs9268832-T	0.49	7E-10		0.14	[0.10-0.20]	Illumina [NR] (imputed)	N
614	chr6_mcf_hap5	3806806	3806807	rs9268835	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DRB9	rs9268835-A	NR	4E-20		0.0276383	[0.022-0.034] unit increase	Affymetrix [319769] (imputed)	N
614	chr6_mcf_hap5	3806806	3806807	rs9268835	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DRB9	rs9268835-A	NR	4E-20		0.0276817	[0.022-0.034] unit increase	Affymetrix [319769] (imputed)	N
614	chr6_mcf_hap5	3806806	3806807	rs9268835	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	HLA-DRB9	rs9268835-A	NR	7E-13		0.0218474	[0.016-0.028] unit increase	Affymetrix [321114] (imputed)	N
614	chr6_mcf_hap5	3806976	3806977	rs6903608	24920014	Cozen W	2014-06-12	Nat Commun	A meta-analysis of Hodgkin lymphoma reveals 19p13.3 TCF3 as a novel susceptibility locus.	Hodgkin's lymphoma	1,816 European ancestry cases, 7,877 European ancestry controls	1,281 European ancestry cases, 3,218 European ancestry controls	6p21.32	HLA class II, HLA class I	rs6903608-C	0.30	7E-31		1.64	[1.51-1.78]	Affymetrix, Illumina [1004829] (imputed)	N
614	chr6_mcf_hap5	3806976	3806977	rs6903608	24149102	Frampton M	2013-10-22	Nat Commun	Variation at 3p24.1 and 6q23.3 influences the risk of Hodgkin's lymphoma.	Hodgkin's lymphoma	1,465 European ancestry cases, 6,417 European ancestry controls	1,071 European ancestry cases, 953 cases, 1,853 controls	6p21.32	NR	rs6903608-G	0.27	5E-27		1.62	[NR]	Illumina [296129]	N
614	chr6_mcf_hap5	3806976	3806977	rs6903608	21037568	Enciso-Mora V	2010-10-31	Nat Genet	A genome-wide association study of Hodgkin's lymphoma identifies new susceptibility loci at 2p16.1 (REL), 8q24.21 and 10p14 (GATA3).	Hodgkin's lymphoma	589 European ancestry cases, 5,199 European ancestry controls	2,057 European ancestry cases, 3,416 European ancestry controls	6p21.32	HLA-DRA	rs6903608-G	0.27	3E-50		1.7	[1.58-1.82]	Illumina [504374]	N
614	chr6_mcf_hap5	3807463	3807464	rs9268839	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	6p21.32	HLA-DRB1	rs9268839-A	NR	1E-100		0.737171	[0.52-0.95] unit decrease	Illumina [8380626] (imputed)	N
614	chr6_mcf_hap5	3807463	3807464	rs9268839	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	6p21.32	HLA-DRB1	rs9268839-A	0.750718391	3E-7	(AA)	0.623752	[0.39-0.86] unit decrease	Illumina [8380626] (imputed)	N
614	chr6_mcf_hap5	3807463	3807464	rs9268839	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	6p21.32	HLA-DRB1	rs9268839-A	0.56	4E-134	(East Asian)	0.64731	[0.6-0.7] unit decrease	Illumina [8380626] (imputed)	N
614	chr6_mcf_hap5	3807463	3807464	rs9268839	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	6p21.32	HLA-DRB1	rs9268839-A	0.55	1E-250	(EA)	0.90412	[0.87-0.94] unit decrease	Illumina [8380626] (imputed)	N
614	chr6_mcf_hap5	3807463	3807464	rs9268839	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	6p21.32	HLA-DRB1	rs9268839-G	0.45	1E-250	(EA)	2.47	[2.39-2.55]	Affymetrix, Illumina [up to 9739303] (imputed)	N
614	chr6_mcf_hap5	3807463	3807464	rs9268839	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	6p21.32	HLA-DRB1	rs9268839-G	0.45	1E-250		2.28	[2.22-2.34]	Affymetrix, Illumina [up to 9739303] (imputed)	N
614	chr6_mcf_hap5	3807463	3807464	rs9268839	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	6p21.32	HLA-DRB1	rs9268839-G	0.44	2E-145	(East Asian)	1.9	[1.81-1.99]	Affymetrix, Illumina [up to 9739303] (imputed)	N
614	chr6_mcf_hap5	3807895	3807896	rs9268845	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	HLA-DRB9	rs9268845-T	NR	1E-11		0.0248689	[0.018-0.032] unit decrease	Affymetrix [127266] (imputed)	N
614	chr6_mcf_hap5	3807936	3807937	rs9268846	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DRB9	rs9268846-G	NR	5E-10		0.0201434	[0.014-0.026] unit increase	Affymetrix [323858] (imputed)	N
614	chr6_mcf_hap5	3807936	3807937	rs9268846	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	HLA-DRB9	rs9268846-G	NR	2E-9		0.019558	[0.013-0.026] unit increase	Affymetrix [127266] (imputed)	N
614	chr6_mcf_hap5	3807994	3807995	rs9268848	32890573	Yan Q	2020-09-02	J Allergy Clin Immunol	A genome-wide association study of asthma hospitalizations in adults.	Exacerbations requiring hospitalisation in asthma	1,658 British ancestry cases, 32,509 British ancestry controls	NA	6p21.32	NR	rs9268848-G	0.42	2E-6		0.84	[NR]	Affymetrix [87696888] (imputed)	N
614	chr6_mcf_hap5	3807994	3807995	rs9268848	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	6p21.32	HLA-DRB9	rs9268848-A	0.551419	2E-25		0.025138251	[0.02-0.03] unit increase	Affymetrix [93095623] (imputed)	N
614	chr6_mcf_hap5	3807994	3807995	rs9268848	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	6p21.32	NR	rs9268848-?	NR	3E-20				Affymetrix [~ 8270000] (imputed)	N
614	chr6_mcf_hap5	3807994	3807995	rs9268848	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	6p21.32	HLA-DRA	rs9268848-A	0.6148	6E-9	(East Asian)	0.0347	[0.023-0.046] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
614	chr6_mcf_hap5	3808273	3808274	rs9268851	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein H6PD	5,364 Icelandic ancestry individuals	NA	6p21.32		rs9268851-A	0.2209	1E-96		0.45447	[0.41-0.5] unit increase	Illumina [7506463] (imputed)	N
614	chr6_mcf_hap5	3808334	3808335	rs9268853	30552108	Kawabata Y	2018-12-14	Diabetes	A genome-Wide Association Study Confirming a Strong Effect of HLA and Identifying Variants in CSAD/lnc-ITGB7-1 on Chromosome 12q13.13 Associated with Susceptibility to Fulminant Type 1 Diabetes.	Fulminant type 1 diabetes	257 Japanese ancestry cases, 419 Japanese ancestry controls	NA	6p21.32	HLA	rs9268853-?	NR	2E-23		3.18	[2.53-4.01]	Affymetrix [426851] (imputed)	N
614	chr6_mcf_hap5	3808334	3808335	rs9268853	23511034	Yang SK	2013-04-01	Inflamm Bowel Dis	Genome-wide association study of ulcerative colitis in Koreans suggests extensive overlapping of genetic susceptibility with Caucasians.	Ulcerative colitis	388 Korean ancestry cases, 739 Korean ancestry controls	417 Korean ancestry cases, 732 Korean ancestry controls	6p21.32	MHC	rs9268853-T	0.64	3E-6		1.37	[1.20-1.56]	Illumina [581060]	N
614	chr6_mcf_hap5	3808334	3808335	rs9268853	23349640	Vijai J	2013-01-17	PLoS Genet	Susceptibility loci associated with specific and shared subtypes of lymphoid malignancies.	Lymphoma	275 Follicular non-Hodgkin's Lymphoma cases, 269 diffuse large B-cell non-Hodgkin's Lymphoma cases, 198 other non-Hodgkin's Lymphoma cases, 202 Hodgkin's Lymphoma cases, 4,044 controls	202 European ancestry Follicular non-Hodgkin's Lymphoma cases, 367 European ancestry diffuse large B-cell non-Hodgkin's Lymphoma cases, 577 European ancestry other non-Hodgkin's Lymphoma cases, 99 European ancestry Hodgkin's Lymphoma cases, 2,596 European ancestry controls	6p21.32	BTLN2, HLA-DRA, HLA-DRB5, HLA-DRB1	rs9268853-C	NR	2E-10	(FL)	1.56	[NR]	Affymetrix [530583]	N
614	chr6_mcf_hap5	3808334	3808335	rs9268853	21297633	Anderson CA	2011-02-06	Nat Genet	Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47.	Ulcerative colitis	6,687 European ancestry cases, 19,718 European ancestry controls	9,628 European ancestry cases, 12,917 European ancestry controls	6p21.32	HLA-DRA, HLA-DRB5, BTNL2, HLA-DRB1, HLA-DQA1	rs9268853-T	0.66	1E-55		1.4	[1.34-1.47]	Affymetrix, Illumina [~ 1100000] (imputed)	N
614	chr6_mcf_hap5	3808410	3808411	rs9268856	24943344	Ferrari R	2014-07-01	Lancet Neurol	Frontotemporal dementia and its subtypes: a genome-wide association study.	Frontotemporal dementia	1,377 European ancestry behavioural variant cases, 308 European ancestry Semantic dementia cases, 269 European ancestry Progressive nonfluent aphasia cases, 200 European ancestry Frontotremporal dementia with motor neuron disease cases, up to 4,308 European ancestry controls	690 European ancestry behavioural variant cases, 190 European ancestry Semantic dementia cases, 221 European ancestry Progressive nonfluent aphasia cases, 94 European ancestry Frontotremporal dementia with motor neuron disease cases, 177 European ancestry Frontotemporal lobar degeneration cases, up to 5,094 European ancestry controls	6p21.32	HLA-DRA, HLA-DRB5, BTNL2	rs9268856-C	0.748	6E-9	(All Frontotemporal dementia)	1.24	[1.16-1.32]	Illumina [6026385] (imputed)	N
614	chr6_mcf_hap5	3809835	3809836	rs9268877	29905830	Lee HS	2018-08-01	J Crohns Colitis	An Intergenic Variant rs9268877 Between HLA-DRA and HLA-DRB Contributes to the Clinical Course and Long-term Outcome of Ulcerative Colitis.	Poor prognosis in Crohn's disease	243 Korean ancestry poor prognosis cases, 364 Korean ancestry good prognosis controls	145 Korean ancestry poor prognosis cases, 129 Korean ancestry good prognosis controls	6p21.32	NA	rs9268877-A	0.35	1E-8		1.72	[1.43-2.07]	Illumina [up to 519662]	N
614	chr6_mcf_hap5	3809835	3809836	rs9268877	19915572	Barrett JC	2009-11-15	Nat Genet	Genome-wide association study of ulcerative colitis identifies three new susceptibility loci, including the HNF4A region.	Ulcerative colitis	2,361 European ancestry cases, 5,417 European ancestry controls	2,321 European ancestry cases, 4,818 European ancestry controls	6p21.32	MHC	rs9268877-?	NR	4E-23				Affymetrix [NR]	N
614	chr6_mcf_hap5	3809835	3809836	rs9268877	18836448	Franke A	2008-10-05	Nat Genet	Sequence variants in IL10, ARPC2 and multiple other loci contribute to ulcerative colitis susceptibility.	Ulcerative colitis	1,167 European ancestry cases, 777 European ancestry controls	1,855 European ancestry cases, 3,091 European ancestry controls	6p21.32	HLA-DRA, BTNL2	rs9268877-T	0.45	6E-18		1.45	[1.33-1.58]	Affymetrix [355262]	N
614	chr6_mcf_hap5	3810656	3810657	rs9268896	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs9268896-A	0.232	3E-20	(Complement C4, C4A.C4B.4481.34.2)	0.28	[0.22-0.34] unit decrease	Affymetrix [10572788] (imputed)	N
614	chr6_mcf_hap5	3810768	3810769	rs9268905	28041642	Carmona FD	2016-12-29	Am J Hum Genet	A Genome-wide Association Study Identifies Risk Alleles in Plasminogen and P4HA2 Associated with Giant Cell Arteritis.	Giant cell arteritis	2,134 European ancestry cases, 9,125 European ancestry controls	NA	6p21.32	HLA-DRA, HLA-DRB1	rs9268905-?	0.37	2E-54		1.79	[1.67-1.93]	Illumina [1844133] (imputed)	N
614	chr6_mcf_hap5	3810768	3810769	rs9268905	21602797	Wright FA	2011-05-22	Nat Genet	Genome-wide association and linkage identify modifier loci of lung disease severity in cystic fibrosis at 11p13 and 20q13.2.	Cystic fibrosis severity	2,317 European ancestry cases, 177 cases	898 European ancestry sibling pair cases, 75 sibling pair cases	6p21.32	HLA-DRA	rs9268905-C	0.32	1E-7				Illumina [~ 2609000] (imputed)	N
614	chr6_mcf_hap5	3811191	3811192	rs78218185	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Asthma	13,015 East Asian ancestry cases, 162,933 East Asian ancestry controls	NA	6p21.32		rs78218185-A	0.135952394	4E-43		0.27918372	[0.24-0.32] unit increase	Illumina [13429513] (imputed)	N
614	chr6_mcf_hap5	3811526	3811527	rs9268923	26819262	Zhou Y	2016-01-27	Mult Scler	Genetic loci for Epstein-Barr virus nuclear antigen-1 are associated with risk of multiple sclerosis.	Epstein Barr virus nuclear antigen 1 IgG levels	1,243 parents and up to 2,356 children from 992 families, 1,956 Mexican American individuals		6p21.32	HLA-DRB5, HLA-DQA1, HLA-DRA, HLA-DRB1	rs9268923-C	0.552	1E-11	(non-Mexican American parents and children)	0.18	unit increase	Illumina [up to 2428201] (imputed)	N
614	chr6_mcf_hap5	3811526	3811527	rs9268923	26819262	Zhou Y	2016-01-27	Mult Scler	Genetic loci for Epstein-Barr virus nuclear antigen-1 are associated with risk of multiple sclerosis.	Epstein Barr virus nuclear antigen 1 IgG levels	1,243 parents and up to 2,356 children from 992 families, 1,956 Mexican American individuals		6p21.32	HLA-DRA, HLA-DRB5, HLA-DQA1, HLA-DRB1	rs9268923-C	0.552	1E-13	(non-Mexican American parents)	0.252	unit increase	Illumina [up to 2428201] (imputed)	N
614	chr6_mcf_hap5	3811526	3811527	rs9268923	26819262	Zhou Y	2016-01-27	Mult Scler	Genetic loci for Epstein-Barr virus nuclear antigen-1 are associated with risk of multiple sclerosis.	Epstein Barr virus nuclear antigen 1 IgG levels	1,243 parents and up to 2,356 children from 992 families, 1,956 Mexican American individuals		6p21.32	HLA-DRA, HLA-DRB5, HLA-DQA1, HLA-DRB1	rs9268923-C	0.552	1E-11	(non-Mexican American sero-positive children)	0.225	unit increase	Illumina [up to 2428201] (imputed)	N
614	chr6_mcf_hap5	3811526	3811527	rs9268923	20228798	Franke A	2010-03-14	Nat Genet	Genome-wide association study for ulcerative colitis identifies risk loci at 7q22 and 22q13 (IL17REL).	Ulcerative colitis	1,043 European ancestry cases, 1,703 European ancestry controls	2,539 European ancestry cases, 5,428 European ancestry controls	6p21.32	HLA-DRA	rs9268923-C	0.67	4E-15		1.45	[1.33-1.59]	Affymetrix [1897764] (imputed)	N
614	chr6_mcf_hap5	3811660	3811661	rs9268925	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	6p21.32	Intergenic	rs9268925-C	NR	1E-23		0.0788801	[0.063-0.094] unit increase	Illumina [13520550] (imputed)	N
614	chr6_mcf_hap5	3811749	3811750	rs9469120	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Yeast infection	52,218 European ancestry cases, 10,235 European ancestry controls	NA	6p21.32	NR	rs9469120-?	NR	9E-8		0.0846	[0.054-0.116] unit decrease	Illumina [at least 560000] (imputed)	N
614	chr6_mcf_hap5	3811817	3811818	rs113585425	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs113585425-C	0.19	4E-8		4.04	[3.10-5.28]	Illumina [NR] (imputed)	N
614	chr6_mcf_hap5	3811859	3811860	rs2395185	25186300	Terao C	2014-09-03	Arthritis Rheumatol	Association between antinuclear antibodies and the HLA class II locus and heterogeneous characteristics of staining patterns: the Nagahama study.	Antinuclear antibody levels	3,185 Japanese ancestry individuals	3,963 Japanese ancestry individuals	6p21.32	HLA-DRA, HLA-DRB5	rs2395185-?	NR	1E-11		0.25	unit increase	Illumina [303506]	N
614	chr6_mcf_hap5	3811859	3811860	rs2395185	23143601	Lan Q	2012-11-11	Nat Genet	Genome-wide association analysis identifies new lung cancer susceptibility loci in never-smoking women in Asia.	Lung cancer	5,510 East Asian ancestry cases, 4,544 East Asian ancestry controls	1,099 East Asian ancestry cases, 2,913 East Asian ancestry controls	6p21.32	HLA class II	rs2395185-T	0.35	1E-8		1.17	[1.11-1.23]	Illumina [596032]	N
614	chr6_mcf_hap5	3811859	3811860	rs2395185	22286212	Urayama KY	2012-01-27	J Natl Cancer Inst	Genome-wide association study of classical Hodgkin lymphoma and Epstein-Barr virus status-defined subgroups.	Hodgkin's lymphoma	1,200 European ancestry cases, 6,417 European ancestry controls	563 European ancestry cases, 613 European ancestry controls	6p21.32	HLA-DRA	rs2395185-?	NR	4E-31	(Total cHL)	1.82	[1.67-2.00]	Illumina [502514]	N
614	chr6_mcf_hap5	3811859	3811860	rs2395185	20228799	McGovern DP	2010-03-14	Nat Genet	Genome-wide association identifies multiple ulcerative colitis susceptibility loci.	Ulcerative colitis	2,693 European ancestry cases, 6,791 European ancestry controls	2,009 European ancestry cases, 1,580 European ancestry controls	6p21.32	C6orf10, BTNL2, HLA	rs2395185-G	NR	9E-23		1.49	[NR]	Illumina [266047]	N
614	chr6_mcf_hap5	3811859	3811860	rs2395185	19915573	Asano K	2009-11-15	Nat Genet	A genome-wide association study identifies three new susceptibility loci for ulcerative colitis in the Japanese population.	Ulcerative colitis	376 Japanese ancestry cases, 934 Japanese ancestry controls	376 Japanese ancestry cases, 1,097 Japanese ancestry controls	6p21.32	intergenic	rs2395185-G	0.61	5E-22		1.92	[1.68-2.19]	Illumina [513923]	N
614	chr6_mcf_hap5	3811859	3811860	rs2395185	19122664	Silverberg MS	2009-01-04	Nat Genet	Ulcerative colitis-risk loci on chromosomes 1p36 and 12q15 found by genome-wide association study.	Ulcerative colitis	1,022 European ancestry cases, 2,503 European ancestry controls	1,387 European ancestry cases, 1,115 European ancestry controls	6p21.32	HLA-DQB1, HLA-DRA, BTNL2, HLA-DRB5, HLA-DRB1, HLA-DQA1	rs2395185-?	0.67	1E-16		1.52		Illumina [280748]	N
614	chr6_mcf_hap5	3811968	3811969	rs2894257	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p21.32	HLA-DRADQA2	rs2894257-C	0.53	8E-36		1.36	[1.33-1.39]	Illumina [at least 560000] (imputed)	N
614	chr6_mcf_hap5	3812010	3812011	rs2395190	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic sinusitis	4,617 East Asian ancestry cases, 152,226 East Asian ancestry controls	NA	6p21.32		rs2395190-T	0.301110024	1E-29		0.26669198	[0.22-0.31] unit decrease	Illumina [13426486] (imputed)	N
614	chr6_mcf_hap5	3812438	3812439	rs9268948	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DRB9	rs9268948-G	NR	2E-9		0.0189254	[0.013-0.025] unit decrease	Affymetrix [319769] (imputed)	N
614	chr6_mcf_hap5	3812438	3812439	rs9268948	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DRB9	rs9268948-G	NR	2E-9		0.0190762	[0.013-0.025] unit decrease	Affymetrix [319769] (imputed)	N
614	chr6_mcf_hap5	3812451	3812452	rs35880697	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6p21.32	NR	rs35880697-?	NR	7E-10				Affymetrix [~ 8270000] (imputed)	N
614	chr6_mcf_hap5	3814030	3814031	rs4947340	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	6p21.32	HLA-DRB9	rs4947340-T	0.40103	1E-52		0.0369333	[0.032-0.042] unit decrease	Affymetrix [93095623] (imputed)	N
614	chr6_mcf_hap5	3814043	3814044	rs4947257	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p21.32	NR	rs4947257-?	NR	1E-12		0.0988	[0.071-0.126] unit decrease	Illumina [at least 560000] (imputed)	N
614	chr6_mcf_hap5	3814238	3814239	rs9268989	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs9268989-A	0.378	6E-14		0.856	[0.81-0.9]	Illumina [11270530] (imputed)	N
614	chr6_mcf_hap5	3814928	3814929	rs9391782	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	6p21.32		rs9391782-C	0.36641	1E-6		0.033747	[0.02-0.047] unit increase	Affymetrix [15580782] (imputed)	N
614	chr6_mcf_hap5	3816210	3816211	rs9269029	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs9269029-A	0.176	2E-8		0.866	[0.82-0.92]	Illumina [11270530] (imputed)	N
614	chr6_mcf_hap5	3816280	3816281	rs9405038	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	High density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	6p21.32	HLA-DRA, HLA-DRB5	rs9405038-?		1E-13		0.0366	[0.027-0.046] unit decrease	Illumina [31500000] (imputed)	N
614	chr6_mcf_hap5	3816909	3816910	rs9269041	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on Dendritic Cell	2,871 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9269041-A	0.60762	1E-9		0.2062	[0.14-0.27] unit decrease	Illumina [17926566] (imputed)	N
614	chr6_mcf_hap5	3818988	3818990	rs145954018	30674883	Jin Y	2019-01-23	Nat Commun	Early-onset autoimmune vitiligo associated with an enhancer variant haplotype that upregulates class II HLA expression.	Vitiligo (early onset)	704 European ancestry cases, 9,031 European ancestry controls	375 European ancestry cases, 1,455 European ancestry controls	6p21.32	NR	rs145954018-?	NR	3E-54		4.62	[4.42-4.82]	NR [up to 494043] (imputed)	N
614	chr6_mcf_hap5	3819410	3819411	rs9357149	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.32		rs9357149-C	0.982	4E-24				Affymetrix [10369434] (imputed)	N
614	chr6_mcf_hap5	3819636	3819637	rs9269080	30578877	Dahlin A	2018-12-19	J Allergy Clin Immunol	Large-scale, multi-ethnic genome-wide association study identifies novel loci contributing to asthma susceptibility in adults.	Adult asthma	16,274 European ancestry cases, 38,269 European ancestry controls	10,365 European ancestry cases, 16,110 European ancestry controls, cases and controls (see Moffatt et al 2010)	6p21.32	HLA-DRB9	rs9269080-?	NR	1E-8		1.098901	[1.05-1.11]	Affymetrix [7230512] (imputed)	N
614	chr6_mcf_hap5	3819767	3819768	rs9269081	29196614	Sud A	2017-12-01	Nat Commun	Genome-wide association study of classical Hodgkin lymphoma identifies key regulators of disease susceptibility.	Nodular sclerosis Hodgkin lymphoma	1,278 European ancestry cases, 14,325 European ancestry controls	1,586 cases, 3,069 controls	6p21.32	HLA-DRA	rs9269081-?	NR	2E-39		1.82	[1.67-2.00]	Illumina [> 10000000] (imputed)	N
614	chr6_mcf_hap5	3820366	3820367	rs2071805	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Osteoporosis	8,520 European ancestry cases, 479,981 European ancestry controls, 9,794 East Asian ancestry cases, 168,932 East Asian ancestry controls	NA	6p21.32		rs2071805-T	NR	9E-10		0.144	[0.098-0.19] unit decrease	Affymetrix, Illumina [25844994] (imputed)	N
614	chr6_mcf_hap5	3820789	3820790	rs34452045	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs34452045-G	0.145	3E-31		0.694	[0.63-0.75]	Illumina [11270530] (imputed)	N
614	chr6_mcf_hap5	3821892	3821893	rs9269108	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p21.32	NR	rs9269108-?	NR	3E-6		4.641	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
614	chr6_mcf_hap5	3821935	3821936	rs9269109	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8+ Natural Killer T Absolute Count	3,652 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9269109-C	0.36376	3E-8		0.1671	[0.11-0.23] unit increase	Illumina [18427348] (imputed)	N
614	chr6_mcf_hap5	3821935	3821936	rs9269109	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28- CD25++ CD8+ T cell Absolute Count	3,130 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9269109-C	0.35879	1E-8		0.1597	[0.11-0.21] unit increase	Illumina [18189521] (imputed)	N
614	chr6_mcf_hap5	3822468	3822469	rs28895243	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	6p21.32	HLA-DRB9	rs28895243-G	0.039859	5E-20		0.05294043	[0.042-0.064] unit decrease	Affymetrix [93095623] (imputed)	N
614	chr6_mcf_hap5	3822737	3822738	rs116353692	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (adrenergics, inhalants)	5,880 East Asian ancestry cases, 172,846 East Asian ancestry controls	NA	6p21.32		rs116353692-C	0.139167381	2E-13		0.21394032	[0.16-0.27] unit increase	Illumina [13429980] (imputed)	N
614	chr6_mcf_hap5	3822867	3822868	rs12194148	21156761	Padyukov L	2010-12-14	Ann Rheum Dis	A genome-wide association study suggests contrasting associations in ACPA-positive versus ACPA-negative rheumatoid arthritis.	Rheumatoid arthritis	1,147 European ancestry ACPA positive RA cases, 774 European ancestry ACPA negative RA cases, 1,079 European ancestry controls	887 European ancestry ACPA positive RA cases, 1,218 European ancestry controls	6p21.32	HLA	rs12194148-?	NR	5E-58	(ACPA-positive RA vs controls)			Illumina [1723056] (imputed)	N
614	chr6_mcf_hap5	3823219	3823220	rs12195582	25279986	Skibola CF	2014-10-02	Am J Hum Genet	Genome-wide association study identifies five susceptibility loci for follicular lymphoma outside the HLA region.	Follicular lymphoma	2,728 European ancestry cases, 7,758 European ancestry controls	1,795 European ancestry cases, 5,586 European ancestry controls	6p21.32	HLA	rs12195582-T	0.465	5E-100		1.78	[1.69-1.88]	Illumina [up to 21554489]	N
614	chr6_mcf_hap5	3823819	3823820	rs9269136	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DRB9	rs9269136-G	NR	1E-11		0.0239787	[0.017-0.031] unit decrease	Affymetrix [321169] (imputed)	N
614	chr6_mcf_hap5	3824063	3824068	rs200093869	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Iron deficiency anemia	12,317 European ancestry cases, 468,624 European ancestry controls, 4,618 East Asian ancestry cases, 174,057 East Asian ancestry controls	NA	6p21.32		rs200093869-C	NR	1E-12		0.1142	[0.083-0.146] unit increase	Affymetrix, Illumina [25844780] (imputed)	N
614	chr6_mcf_hap5	3824170	3824171	rs9269143	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DRB9	rs9269143-T	NR	2E-9		0.0207074	[0.014-0.027] unit decrease	Affymetrix [319769] (imputed)	N
614	chr6_mcf_hap5	3824170	3824171	rs9269143	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DRB9	rs9269143-T	NR	1E-8		0.0198652	[0.013-0.027] unit decrease	Affymetrix [319769] (imputed)	N
614	chr6_mcf_hap5	3824362	3824363	rs9378212	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	6p21.32	NR	rs9378212-T	0.469078	7E-211		0.059685	[0.056-0.063] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
614	chr6_mcf_hap5	3824362	3824363	rs9378212	27286809	Ligthart S	2016-06-10	BMC Genomics	Bivariate genome-wide association study identifies novel pleiotropic loci for lipids and inflammation.	C-reactive protein levels or HDL-cholesterol levels (pleiotropy)	65,000 individuals (C-reactive protein), 99,900 individuals (HDL-cholesterol)	NA	6p21.32	HLA-DRA	rs9378212-T	NR	7E-10				NR [2501543] (imputed)	N
614	chr6_mcf_hap5	3824587	3824588	rs28895267	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.32		rs28895267-C	0.518	1E-110				Affymetrix [10369434] (imputed)	N
614	chr6_mcf_hap5	3824587	3824588	rs28895267	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DRB9	rs28895267-T	NR	9E-16		0.0253192	[0.019-0.031] unit increase	Affymetrix [323858] (imputed)	N
614	chr6_mcf_hap5	3824587	3824588	rs28895267	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	HLA-DRB9	rs28895267-T	NR	4E-15		0.0247032	[0.019-0.031] unit increase	Affymetrix [127266] (imputed)	N
614	chr6_mcf_hap5	3824663	3824664	rs17209866	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p21.32	NR	rs17209866-A	0.453955	2E-344				Affymetrix, Illumina [24649327] (imputed)	N
614	chr6_mcf_hap5	3825127	3825128	rs17203563	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28- CD127- CD25++ CD8+ T cell Absolute Count	3,130 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs17203563-A	0.26383	5E-8		0.1789	[0.11-0.24] unit increase	Illumina [18189521] (imputed)	N
614	chr6_mcf_hap5	3825385	3825386	rs7453498	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Dementia and core Alzheimer's disease neuropathologic changes	up to 3,887 cases, up to 1,027 controls	NA	6p21.32	intergenic	rs7453498-C	0.8656	3E-6	(Complete)	0.8142	[0.47-1.16] unit increase	Affymetrix, Illumina [NR] (imputed)	N
614	chr6_mcf_hap5	3825753	3825754	rs2395191	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic obstructive pulmonary disease	13,530 European ancestry cases, 454,945 European ancestry controls, 4,017 East Asian ancestry cases, 162,653 East Asian ancestry controls	NA	6p21.32		rs2395191-C	NR	9E-10		0.077	[0.052-0.102] unit increase	Affymetrix, Illumina [25843162] (imputed)	N
614	chr6_mcf_hap5	3825753	3825754	rs2395191	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8 on Natural Killer T	3,103 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs2395191-C	0.36584	2E-9		0.1751	[0.12-0.23] unit increase	Illumina [18027570] (imputed)	N
614	chr6_mcf_hap5	3825753	3825754	rs2395191	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs2395191-C	NR	6E-10		1.1764705	[1.12-1.24]	Affymetrix [7846216] (imputed)	N
614	chr6_mcf_hap5	3826311	3826312	rs2395192	33204752	Butler-Laporte G	2020-09-24	Open Forum Infect Dis	Genetic Determinants of Antibody-Mediated Immune Responses to Infectious Diseases Agents: A Genome-Wide and HLA Association Study.	Epstein-Barr virus EA-D antibody levels	7,763 White British ancestry individuals	NA	6p21.32	HLA-DRB9	rs2395192-C	0.440	3E-16		0.13	[0.099-0.161] unit decrease	NR [25472218] (imputed)	N
614	chr6_mcf_hap5	3826311	3826312	rs2395192	31102405	Labreche K	2019-05-17	Neuro Oncol	A genome-wide association study identifies susceptibility loci for primary central nervous system lymphoma at 6p25.3 and 3p22.1: a LOC network study.	Primary central nervous system lymphoma	475 European ancestry cases, 1,134 European ancestry controls	NA	6p21.32	HLA-DRA	rs2395192-C	0.59	2E-7		1.51	[1.29-1.76]	Illumina [> 10000000] (imputed)	N
614	chr6_mcf_hap5	3833700	3833701	rs113103322	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on plasmacytoid Dendritic Cell	2,872 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs113103322-A	0.11666	2E-27		0.5638	[0.46-0.66] unit increase	Illumina [17926607] (imputed)	N
614	chr6_mcf_hap5	3833822	3833823	rs28437337	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	6p21.32		rs28437337-T	0.36183	6E-8		0.038474	[0.025-0.052] unit increase	Affymetrix [15580782] (imputed)	N
614	chr6_mcf_hap5	3834095	3834096	rs78279385	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	CAG-180 sp000432435 abundance in stool	5,959 Finnish ancestry individuals	NA	6p21.32		rs78279385-A	0.255984	3E-8		0.158067	[0.1-0.21] unit increase	Illumina [7980478] (imputed)	N
614	chr6_mcf_hap5	3834095	3834096	rs78279385	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	74,970 East Asian ancestry individuals	NA	6p21.32		rs78279385-A	0.478006	1E-14		0.0379801	[0.028-0.048] unit increase	Illumina [13465896] (imputed)	N
614	chr6_mcf_hap5	3834099	3834100	rs9269233	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs9269233-A	0.23	3E-11		1.17	[1.12-1.22]	Illumina [11270530] (imputed)	N
614	chr6_mcf_hap5	3834125	3834126	rs9269234	28118524	Saxena R	2017-01-24	Arthritis Rheumatol	A Multinational Arab Genome-Wide Association Study Identifies New Genetic Associations for Rheumatoid Arthritis.	Rheumatoid arthritis (rheumatoid factor and/or anti-cyclic citrullinated peptide seropositive)	357 African admixed and non-African admixed Arab ancestry cases, 352 African admixed and non-African admixed Arab ancestry controls	234 Arab ancestry cases, 225 Arab ancestry controls	6p21.32	HLA-DRB1	rs9269234-G	0.65	6E-16		2.14	[1.78-2.57]	Illumina [7000653] (imputed)	N
614	chr6_mcf_hap5	3834125	3834126	rs9269234	28118524	Saxena R	2017-01-24	Arthritis Rheumatol	A Multinational Arab Genome-Wide Association Study Identifies New Genetic Associations for Rheumatoid Arthritis.	Rheumatoid arthritis	97 African admixed Arab ancestry cases, 410 non-African admixed Arab ancestry cases, 4 Arab ancestry cases, 56 African admixed Arab ancestry controls, 290 non-African admixed Arab ancestry controls, 6 Arab ancestry controls	283 Arab ancestry cases, 221 Arab ancestry controls	6p21.32	HLA-DRB1	rs9269234-G	0.65	5E-11		1.75	[1.48-2.06]	Illumina [7000653] (imputed)	N
614	chr6_mcf_hap5	3834171	3834172	rs62405562	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on naive-mature B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs62405562-G	0.45562	9E-11		0.1848	[0.13-0.24] unit increase	Illumina [18238311] (imputed)	N
614	chr6_mcf_hap5	3834171	3834172	rs62405562	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on IgD+ CD38dim B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs62405562-G	0.45562	2E-15		0.2285	[0.17-0.28] unit increase	Illumina [18238311] (imputed)	N
614	chr6_mcf_hap5	3834171	3834172	rs62405562	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on IgD+ CD24- B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs62405562-G	0.45562	1E-11		0.1942	[0.14-0.25] unit increase	Illumina [18238311] (imputed)	N
614	chr6_mcf_hap5	3834171	3834172	rs62405562	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on IgD+ B cell	3,658 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs62405562-G	0.45576	2E-11		0.1921	[0.14-0.25] unit increase	Illumina [18238340] (imputed)	N
614	chr6_mcf_hap5	3834234	3834235	rs2395201	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	6p21.32	NR	rs2395201-?	NR	6E-17	(CCL19)	0.579204	[0.44-0.71] unit increase	Illumina [11901634] (imputed)	N
614	chr6_mcf_hap5	3834281	3834282	rs2395203	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on plasmacytoid Dendritic Cell	2,872 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs2395203-G	0.0565	3E-13		0.4964	[0.36-0.63] unit increase	Illumina [17926607] (imputed)	N
614	chr6_mcf_hap5	3834455	3834456	rs1974459	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	6p21.32		rs1974459-G	0.068544	5E-19		0.040665817	[0.032-0.05] unit increase	Affymetrix [93095623] (imputed)	N
614	chr6_mcf_hap5	3834515	3834516	rs1557550	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	6p21.32		rs1557550-T	0.0574940000000001	7E-28		0.0534048	[0.044-0.063] unit increase	Affymetrix [93095623] (imputed)	N
614	chr6_mcf_hap5	3834720	3834721	rs2395209	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Receptor for advanced glycosylation end products levels	21,758 European ancestry individuals	9,173 individuals	6p21.32		rs2395209-T	0.16	1E-17		0.1071	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
614	chr6_mcf_hap5	3834783	3834784	rs28599891	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	6p21.32	intergenic	rs28599891-G	0.7051	5E-14		0.03041702	[0.023-0.038] unit increase	Affymetrix [~ 2500000] (imputed)	N
614	chr6_mcf_hap5	3834900	3834901	rs28368843	33119750	Vergara C	2020-10-29	J Infect Dis	A multi-ancestry sex stratified genome-wide association study of spontaneous clearance of hepatitis C virus.	Hepatitis C (spontaneous viral clearance)	239 African ancestry male cases, 1,184 African ancestry male controls, 206 African ancestry female cases, 572 African ancestry female controls, 489 European ancestry male cases, 703 European ancestry male controls, 212 European ancestry female cases, 332 European ancestry female controls, 91 Hispanic male cases, 197 Hispanic male controls, 82 Hispanic female cases, 116 Hispanic female controls	NA	6p21.32	NR	rs28368843-T	0.07	5E-7	(female)	2.38	[NR]	Illumina [5730693] (imputed)	N
614	chr6_mcf_hap5	3834915	3834916	rs28453249	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	HLA-DRB9	rs28453249-T	NR	2E-13		0.021088	[0.015-0.027] unit increase	Affymetrix [321114] (imputed)	N
614	chr6_mcf_hap5	3834939	3834940	rs28561769	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p21.32	NR	rs28561769-G	0.459185	3E-228				Affymetrix, Illumina [23114412] (imputed)	N
614	chr6_mcf_hap5	3835505	3835506	rs6916742	26819262	Zhou Y	2016-01-27	Mult Scler	Genetic loci for Epstein-Barr virus nuclear antigen-1 are associated with risk of multiple sclerosis.	Epstein Barr virus nuclear antigen 1 IgG levels	1,243 parents and up to 2,356 children from 992 families, 1,956 Mexican American individuals		6p21.32	HLA-DRA, HLA-DRB5, HLA-DQA1, HLA-DRB1	rs6916742-C	0.569	6E-6	(non-Mexican American children)	0.16	unit decrease	Illumina [up to 2428201] (imputed)	N
614	chr6_mcf_hap5	3835585	3835586	rs138024423	33589587	Sakaue S	2021-02-15	Nat Commun	Genetic determinants of risk in autoimmune pulmonary alveolar proteinosis.	Autoimmune pulmonary alveolar proteinosis	198 Japanese ancestry cases, 395 Japanese ancestry controls	NA	6p21.32		rs138024423-G	0.072	2E-12		5.2	[3.3-8.2]	Illumina [12153232] (imputed)	N
614	chr6_mcf_hap5	3835904	3835905	rs76733997	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DRB9	rs76733997-A	NR	3E-13		0.0290897	[0.021-0.037] unit decrease	Affymetrix [323858] (imputed)	N
614	chr6_mcf_hap5	3836168	3836169	rs112112734	31596875	Traylor M	2019-10-09	PLoS One	Genetic associations with radiological damage in rheumatoid arthritis: Meta-analysis of seven genome-wide association studies of 2,775 cases.	Joint damage in rheumatoid arthritis	2,527 European ancestry individuals, 196 African ancestry individuals, 52 individuals	NA	6p21.32	HLA-DRB5, HLA-DRB6, HLA-DRB1	rs112112734-?	NR	4E-8				Affymetrix, Illumina [4802696] (imputed)	N
614	chr6_mcf_hap5	3836168	3836169	rs112112734	31596875	Traylor M	2019-10-09	PLoS One	Genetic associations with radiological damage in rheumatoid arthritis: Meta-analysis of seven genome-wide association studies of 2,775 cases.	Joint damage in rheumatoid arthritis	2,527 European ancestry individuals	NA	6p21.32	intergenic	rs112112734-?	NR	9E-8				Affymetrix, Illumina [2723488] (imputed)	N
614	chr6_mcf_hap5	3836251	3836252	rs112062732	32723749	Kwon YC	2020-07-28	Ann Rheum Dis	Genome-wide association study in a Korean population identifies six novel susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis	4,068 Korean ancestry cases, 36,487 Korean ancestry controls	NA	6p21.32	HLA-DRB1	rs112062732-?		6E-227		2.44	[2.31-2.58]	Illumina [NR] (imputed)	N
614	chr6_mcf_hap5	3836251	3836252	rs112062732	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	6p21.32	intergenic	rs112062732-C	0.4128	3E-30		0.04384147	[0.036-0.051] unit increase	Affymetrix [~ 2500000] (imputed)	N
614	chr6_mcf_hap5	3862988	3862989	rs117317282	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.32	HLA-DRB5	rs117317282-T	0.03162	1E-12		0.058178984	[0.042-0.074] unit decrease	Affymetrix [93095623] (imputed)	N
614	chr6_mcf_hap5	3864542	3864543	rs114812317	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.32	HLA-DRB5, HLA-DRB6	rs114812317-?		3E-10		1.1363636	[1.09-1.18]	Affymetrix, Illumina [NR]	N
614	chr6_mcf_hap5	3864722	3864723	rs11967891	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	6p21.32	HLA-DRB5	rs11967891-A	0.816158	7E-30		0.0293508	[0.024-0.034] unit increase	Affymetrix [NR] (imputed)	N
614	chr6_mcf_hap5	3864905	3864906	rs2157337	21156761	Padyukov L	2010-12-14	Ann Rheum Dis	A genome-wide association study suggests contrasting associations in ACPA-positive versus ACPA-negative rheumatoid arthritis.	Rheumatoid arthritis	1,147 European ancestry ACPA positive RA cases, 774 European ancestry ACPA negative RA cases, 1,079 European ancestry controls	887 European ancestry ACPA positive RA cases, 1,218 European ancestry controls	6p21.32	HLA	rs2157337-?	NR	9E-52	(ACPA-positive RA vs ACPA-negative RA)			Illumina [1723056] (imputed)	N
614	chr6_mcf_hap5	3865006	3865007	rs112621731	34011352	Schwarm C	2021-05-19	Orphanet J Rare Dis	Identification of two novel bullous pemphigoid- associated alleles, HLA-DQA1*05:05 and -DRB1*07:01, in Germans.	Bullous pemphigoid	438 German cases, 417 German controls	NA	6p21.32	HLA-DRB5, HLA-DRB6	rs112621731-?	NR	6E-8		0.708733	[0.45-0.96] unit increase	Affymetrix [up to 386296] (imputed)	N
614	chr6_mcf_hap5	3865108	3865109	rs67851010	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	TCRgd T cell Absolute Count	3,650 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs67851010-A	0.77135	2E-11		0.3066	[0.22-0.4] unit increase	Illumina [18427099] (imputed)	N
614	chr6_mcf_hap5	3865154	3865155	rs72851020	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Naive CD8+ T cell Absolute Count	3,395 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs72851020-T	0.76839	4E-10		0.2077	[0.14-0.27] unit increase	Illumina [18332267] (imputed)	N
614	chr6_mcf_hap5	3865388	3865389	rs115780495	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	SSC-A on myeloid Dendritic Cell	2,872 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs115780495-G	0.20794	4E-10		0.34	[0.23-0.45] unit increase	Illumina [17926605] (imputed)	N
614	chr6_mcf_hap5	3865476	3865477	rs33997707	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	6p21.32		rs33997707-A	NR	1E-36		0.0422	[0.036-0.049] unit increase	Affymetrix, Illumina [20521447] (imputed)	N
614	chr6_mcf_hap5	3866078	3866079	rs78533241	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DRB5	rs78533241-A	NR	2E-18		0.0263079	[0.02-0.032] unit decrease	Affymetrix [323123] (imputed)	N
614	chr6_mcf_hap5	3866160	3866161	rs7747236	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6p21.32	HLA-DRB5	rs7747236-T	0.136236	2E-9		0.032500744	[0.022-0.043] unit increase	Affymetrix [93095623] (imputed)	N
614	chr6_mcf_hap5	3866964	3866965	rs68174286	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR+ T cell Absolute Count	3,580 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs68174286-T	0.3045	7E-13		0.3263	[0.24-0.41] unit increase	Illumina [18377392] (imputed)	N
614	chr6_mcf_hap5	3867601	3867602	rs541803504	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs541803504-T	0.176	4E-26	(Complement C4, C4A.C4B.4481.34.2)	0.38	[0.3-0.46] unit increase	Affymetrix [10572788] (imputed)	N
614	chr6_mcf_hap5	3873518	3873519	rs72492309	30898391	Lawrenson K	2019-03-19	Gynecol Oncol	Genome-wide association studies identify susceptibility loci for epithelial ovarian cancer in east Asian women.	Epithelial ovarian cancer	3,238 East Asian ancestry cases, 4,083 East Asian ancestry controls	NA	6p21.32		rs72492309-?	NR	2E-6	(serous)	1.27		Illumina [11595112] (imputed)	N
614	chr6_mcf_hap5	3873979	3873980	rs182908437	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.32	intergenic	rs182908437-?		3E-11		1.1494253	[1.1-1.2]	Affymetrix, Illumina [NR]	N
614	chr6_mcf_hap5	3875584	3875585	rs28584364	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4 on naive CD4+ T cell	2,910 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs28584364-T	0.57221	1E-8		0.3238	[0.21-0.44] unit increase	Illumina [17945511] (imputed)	N
614	chr6_mcf_hap5	3875584	3875585	rs28584364	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4 on Central Memory CD4+ T cell	2,912 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs28584364-T	0.57218	3E-10		0.3333	[0.23-0.44] unit increase	Illumina [17945888] (imputed)	N
614	chr6_mcf_hap5	3875584	3875585	rs28584364	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4 on CD45RA+ CD4+ T cell	2,911 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs28584364-T	0.57219	2E-11		0.3526	[0.25-0.46] unit increase	Illumina [17945546] (imputed)	N
614	chr6_mcf_hap5	3875584	3875585	rs28584364	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4 on CD4+ T cell	2,912 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs28584364-T	0.57218	5E-12		0.3639	[0.26-0.47] unit increase	Illumina [17945888] (imputed)	N
614	chr6_mcf_hap5	3875678	3875679	rs562852671	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	RNU1-61P	rs562852671-T	NR	2E-11		0.0215915	[0.015-0.028] unit decrease	Affymetrix [323858] (imputed)	N
614	chr6_mcf_hap5	3875678	3875679	rs562852671	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	RNU1-61P	rs562852671-T	NR	2E-11		0.0216706	[0.015-0.028] unit decrease	Affymetrix [127266] (imputed)	N
614	chr6_mcf_hap5	3878869	3878870	rs111945767	26562150	Seldin MF	2015-10-10	Mol Med	Genome-wide Association Study of Late-Onset Myasthenia Gravis: Confirmation of TNFRSF11A, and Identification of ZBTB10 and Three Distinct HLA Associations.	Late-onset myasthenia gravis	532 European ancestry cases, 2,128 European ancestry controls	NA	6p21.32	MHC_Class II	rs111945767-G	0.38	3E-17		1.923077	[1.64-2.27]	Illumina [6175472] (imputed)	N
614	chr6_mcf_hap5	3880257	3880258	rs138453460	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	6p21.32		rs138453460-G	0.942891	1E-8		0.0549043	[0.036-0.074] unit increase	NR [11722792] (imputed)	N
614	chr6_mcf_hap5	3880832	3880833	rs28490179	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	RNU1-61P	rs28490179-C	NR	1E-9		0.0229135	[0.016-0.03] unit increase	Affymetrix [321016] (imputed)	N
614	chr6_mcf_hap5	3882710	3882711	rs3828840	23472185	Mero IL	2013-03-05	PLoS One	Oligoclonal band status in Scandinavian multiple sclerosis patients is associated with specific genetic risk alleles.	Multiple sclerosis (OCB status)	1,367 European ancestry OCB positive cases, 161 European ancestry OCB negative cases, 428 European ancestry controls	NA	6p21.32	HLA-DRB1	rs3828840-?	NR	5E-15	(OCB positive vs. controls)	1.94	[1.64-2.29]	Illumina [495970]	N
614	chr6_mcf_hap5	3883941	3883942	rs35467127	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DRB6	rs35467127-T	NR	1E-13		0.0263989	[0.019-0.033] unit increase	Affymetrix [319769] (imputed)	N
614	chr6_mcf_hap5	3883941	3883942	rs35467127	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DRB6	rs35467127-T	NR	2E-13		0.0262282	[0.019-0.033] unit increase	Affymetrix [319769] (imputed)	N
614	chr6_mcf_hap5	3883941	3883942	rs35467127	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DRB6	rs35467127-T	NR	1E-10		0.0232493	[0.016-0.03] unit increase	Affymetrix [321169] (imputed)	N
614	chr6_mcf_hap5	3883941	3883942	rs35467127	33549134	Adolphe C	2021-02-06	Genome Med	Genetic and functional interaction network analysis reveals global enrichment of regulatory T cell genes influencing basal cell carcinoma susceptibility.	Basal cell carcinoma	17,416 European ancestry cases, 375,455 European ancestry controls	NA	6p21.32	HLA-DRB6	rs35467127-T	0.190482	7E-12		0.09424036	[0.067-0.121] unit increase	Affymetrix [7260263] (imputed)	N
614	chr6_mcf_hap5	3886627	3886628	rs144660248	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.32	HLA-DRB1, HLA-DRB5, HLA-DRB6	rs144660248-?		6E-13		1.1764705	[1.12-1.23]	Affymetrix, Illumina [NR]	N
614	chr6_mcf_hap5	3929892	3929893	rs9271585	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	6p21.32	HLA-DQA1	rs9271585-A	0.4121	3E-7	(East Asian)	0.03	[0.019-0.041] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
614	chr6_mcf_hap5	3929892	3929893	rs9271585	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	6p21.32	HLA-DQA1	rs9271585-A	0.3329	7E-12		0.0249	[0.018-0.032] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
614	chr6_mcf_hap5	3929892	3929893	rs9271585	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	6p21.32	NR	rs9271585-A	0.3502	8E-8	(men)	0.0311	[0.02-0.042] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
614	chr6_mcf_hap5	3929912	3929913	rs9271586	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.32		rs9271586-G	0.495	6E-115				Affymetrix [10369434] (imputed)	N
614	chr6_mcf_hap5	3929938	3929939	rs3129763	21779181	Gorlova O	2011-07-14	PLoS Genet	Identification of novel genetic markers associated with clinical phenotypes of systemic sclerosis through a genome-wide association strategy.	Systemic sclerosis	2,296 European ancestry cases, 5,172 European ancestry controls	3,175 European ancestry cases, 4,210 European ancestry controls	6p21.32	HLA-DRB1, HLA-DQA1	rs3129763-?	0.25	1E-11	(ATA positive)	1.65	[1.42-1.91]	Illumina [NR] (imputed)	N
614	chr6_mcf_hap5	3929966	3929967	rs9271588	31879220	Lin GW	2019-12-23	Lancet Oncol	Genetic risk of extranodal natural killer T-cell lymphoma: a genome-wide association study in multiple populations.	Extranodal natural killer T-cell lymphoma (nasal type)	700 Han Chinese ancestry cases, 7,752 Han Chinese ancestry controls	717 East Asian ancestry cases, 12,650 East Asian ancestry controls	6p21.32	HLA-DRB1	rs9271588-C	0.4	9E-26		1.53	[1.41-1.65]	Illumina [3892410] (imputed)	N
614	chr6_mcf_hap5	3929966	3929967	rs9271588	31301374	Noguchi E	2019-07-10	J Allergy Clin Immunol	HLA-DQ and RBFOX1 as susceptibility genes for an outbreak of hydrolyzed wheat allergy.	Hydrolysed wheat protein allergy	452 Japanese ancestry cases, 2,700 Japaneses ancestry controls	45 Japanese ancestry cases, 326 Japaneses ancestry controls	6p21.32	NR	rs9271588-G	0.523	1E-26		2.3	[1.98-2.70]	Illumina [6575663] (imputed)	N
614	chr6_mcf_hap5	3929966	3929967	rs9271588	31102405	Labreche K	2019-05-17	Neuro Oncol	A genome-wide association study identifies susceptibility loci for primary central nervous system lymphoma at 6p25.3 and 3p22.1: a LOC network study.	Primary central nervous system lymphoma	475 European ancestry cases, 1,134 European ancestry controls	NA	6p21.32	NR	rs9271588-?	NR	2E-6		1.45	[1.25-1.68]	Illumina [> 10000000] (imputed)	N
614	chr6_mcf_hap5	3929966	3929967	rs9271588	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	6p21.32	intergenic	rs9271588-C	0.5051	4E-66		0.06142442	[0.054-0.068] unit increase	Affymetrix [~ 2500000] (imputed)	N
614	chr6_mcf_hap5	3929966	3929967	rs9271588	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	6p21.32	intergenic	rs9271588-C	0.5051	2E-58		0.0576552	[0.051-0.065] unit increase	Affymetrix [~ 2500000] (imputed)	N
614	chr6_mcf_hap5	3929966	3929967	rs9271588	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	6p21.32	intergenic	rs9271588-C	0.5051	1E-58		0.05764791	[0.051-0.065] unit increase	Affymetrix [~ 2500000] (imputed)	N
614	chr6_mcf_hap5	3929966	3929967	rs9271588	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	6p21.32	intergenic	rs9271588-C	0.5051	9E-68		0.06247162	[0.055-0.07] unit increase	Affymetrix [~ 2500000] (imputed)	N
614	chr6_mcf_hap5	3929966	3929967	rs9271588	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	6p21.32	intergenic	rs9271588-C	0.5051	2E-66		0.06164672	[0.055-0.069] unit increase	Affymetrix [~ 2500000] (imputed)	N
614	chr6_mcf_hap5	3929966	3929967	rs9271588	24097066	Li Y	2013-10-06	Nat Genet	A genome-wide association study in Han Chinese identifies a susceptibility locus for primary Sjogren's syndrome at 7q11.23.	Sjogren's syndrome	542 Han Chinese ancestry cases, 1,050 Han Chinese ancestry controls	1,303 Han Chinese ancestry cases, 2,727 Han Chinese ancestry controls	6p21.32	HLA-DRB1, HLA-DQA1, c6orf10, BTNL2, HLA-DRA, HLA-DRB5, HLA-DRB6	rs9271588-T	0.532	9E-37		1.75	[1.59-1.89]	Affymetrix [556134]	N
614	chr6_mcf_hap5	3930071	3930072	rs17599077	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs17599077-C	0.19	2E-8		4.08	[3.13-5.32]	Illumina [NR] (imputed)	N
614	chr6_mcf_hap5	3930211	3930212	rs9271593	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs9271593-C	NR	4E-12		0.0198725	[0.014-0.025] unit increase	Affymetrix [321016] (imputed)	N
614	chr6_mcf_hap5	3930261	3930262	rs34967069	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Tumor necrosis factor receptor superfamily member 6 levels	21,758 European ancestry individuals	9,173 individuals	6p21.32		rs34967069-T	0.12	3E-20		0.1381	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
614	chr6_mcf_hap5	3930261	3930262	rs34967069	30642433	Timmers PR	2019-01-15	Elife	Genomics of 1 million parent lifespans implicates novel pathways and common diseases and distinguishes survival chances.	Parental lifespan	at least 500,193 European ancestry offspring	NA	6p21.32	HLA-DQA1	rs34967069-T	0.07	4E-9		0.5613	[0.37-0.75] years increase	NR [up to 9000000] (imputed)	N
614	chr6_mcf_hap5	3930304	3930305	rs9271597	30674883	Jin Y	2019-01-23	Nat Commun	Early-onset autoimmune vitiligo associated with an enhancer variant haplotype that upregulates class II HLA expression.	Vitiligo (late onset)	1,467 European ancestry cases, 19,156 European ancestry controls	977 European ancestry cases, 727 European ancestry controls	6p21.32	NR	rs9271597-A	NR	4E-34		1.63	[1.55-1.71]	NR [up to 494043] (imputed)	N
614	chr6_mcf_hap5	3930304	3930305	rs9271597	30674883	Jin Y	2019-01-23	Nat Commun	Early-onset autoimmune vitiligo associated with an enhancer variant haplotype that upregulates class II HLA expression.	Vitiligo (early onset)	704 European ancestry cases, 9,031 European ancestry controls	375 European ancestry cases, 1,455 European ancestry controls	6p21.32	NR	rs9271597-A	NR	2E-40		2.23	[2.11-2.35]	NR [up to 494043] (imputed)	N
614	chr6_mcf_hap5	3930304	3930305	rs9271597	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	Factor VIII levels	25,897 European ancestry individuals, 4,500 African American individuals, 773 Asian ancestry individuals, 1,440 Hispanic individuals	NA	6p21.32	HLA-DQA1	rs9271597-A	0.42	6E-6	(EA)	0.0137	[0.0084-0.019] unit decrease	Affymetrix, Illumina [13887196] (imputed)	N
614	chr6_mcf_hap5	3930304	3930305	rs9271597	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	Factor VIII levels	25,897 European ancestry individuals, 4,500 African American individuals, 773 Asian ancestry individuals, 1,440 Hispanic individuals	NA	6p21.32	HLA-DQA1	rs9271597-A	0.41	1E-8		0.0152	[0.0099-0.0205] unit decrease	Affymetrix, Illumina [13887196] (imputed)	N
614	chr6_mcf_hap5	3930304	3930305	rs9271597	27723757	Jin Y	2016-11-01	Nat Genet	Genome-wide association studies of autoimmune vitiligo identify 23 new risk loci and highlight key pathways and regulatory variants.	Vitiligo	2,853 European ancestry cases and 37,405 European ancestry controls	1,827 European ancestry cases and 2,181 European ancestry controls	6p21.32	HLA-DRB1, HLA-DQA1	rs9271597-A	0.4269	3E-89		1.772	NR	Illumina [8966411] (imputed)	N
614	chr6_mcf_hap5	3930444	3930445	rs3129765	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	FSC-A on CD4+ T cell	3,113 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs3129765-G	0.75653	1E-10		0.2158	[0.15-0.28] unit decrease	Illumina [18030777] (imputed)	N
614	chr6_mcf_hap5	3930464	3930465	rs9271605	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	6p21.32		rs9271605-A	0.35118	1E-6		0.034564	[0.021-0.049] unit increase	Affymetrix [15580782] (imputed)	N
614	chr6_mcf_hap5	3930485	3930486	rs112396255	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs112396255-G	0.22	5E-9		4.5	[3.42-5.91]	Illumina [NR] (imputed)	N
614	chr6_mcf_hap5	3930583	3930584	rs73728618	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs73728618-T	NR	6E-33		1.481	[1.389-1.58]	Affymetrix [7846216] (imputed)	N
614	chr6_mcf_hap5	3930604	3930605	rs9271608	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	up to 92,771 European ancestry males, up to 113,387 European ancestry females	NA	6p21.32	HLA-DQA1	rs9271608-G	0.22	2E-17		0.042	[0.032-0.052] unit increase	Affymetrix, Illumina, Perlegen [2437193] (imputed)	N
614	chr6_mcf_hap5	3930625	3930626	rs9271611	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	6p21.32	NR	rs9271611-G	0.41	5E-19		1.16	[1.12-1.2]	Illumina [8468885] (imputed)	N
614	chr6_mcf_hap5	3930625	3930626	rs9271611	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Keratinocyte cancer (MTAG)	at least 18,538 European ancestry cases, at least 340,302 European ancestry controls	NA	6p21.32	HLA-DQA1	rs9271611-G	0.379011	2E-22		1.09	[1.07-1.11]	Affymetrix [7600000] (imputed)	N
614	chr6_mcf_hap5	3930990	3930991	rs9271629	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Lymphocyte Absolute Count	3,653 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9271629-A	0.71717	2E-8		0.1945	[0.13-0.26] unit increase	Illumina [18427377] (imputed)	N
614	chr6_mcf_hap5	3931198	3931199	rs9271640	25616667	Goris A	2015-01-22	Brain	Genetic variants are major determinants of CSF antibody levels in multiple sclerosis.	Oligoclonal band status in multiple sclerosis	2,232 European ancestry OCB positive individuals, 275 European ancestry OCB negative individuals, 439 OCB positive individuals, 80 OCB negative individuals	3,026 OCB positive individuals, 452 OCB negative individuals	6p21.32	HLA-DRB1	rs9271640-A	NR	5E-12		1.56	[1.38-1.77]	NR [485522]	N
614	chr6_mcf_hap5	3931198	3931199	rs9271640	23472185	Mero IL	2013-03-05	PLoS One	Oligoclonal band status in Scandinavian multiple sclerosis patients is associated with specific genetic risk alleles.	Multiple sclerosis (OCB status)	1,367 European ancestry OCB positive cases, 161 European ancestry OCB negative cases, 428 European ancestry controls	NA	6p21.32	HLA-DQA1	rs9271640-?	NR	2E-20	(OCB positive vs. controls)	2.37	[1.97-2.84]	Illumina [495970]	N
614	chr6_mcf_hap5	3931217	3931218	rs9271642	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in IDL	115,082 European ancestry individuals	NA	6p21.32		rs9271642-A	0.407279	2E-21		0.0389581	[0.031-0.047] unit decrease	NR [11722792] (imputed)	N
614	chr6_mcf_hap5	3931217	3931218	rs9271642	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	6p21.32		rs9271642-A	0.407279	9E-12		0.028651	[0.02-0.037] unit increase	NR [11722792] (imputed)	N
614	chr6_mcf_hap5	3931217	3931218	rs9271642	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6p21.32	HLA-DQA1	rs9271642-G	0.59407	9E-33		0.032831848	[0.027-0.038] unit increase	Affymetrix [93095623] (imputed)	N
614	chr6_mcf_hap5	3931609	3931610	rs28421666	27436580	Cui Q	2016-07-19	Hum Mol Genet	An extended genome-wide association study identifies novel susceptibility loci for nasopharyngeal carcinoma.	Nasopharyngeal carcinoma	1,583 Southern Chinese ancestry cases, 2,979 Southern Chinese ancestry controls	5,463 Southern Chinese ancestry cases, 5,591 Southern Chinese ancestry controls	6p21.32	NR	rs28421666-?	0.87	1E-10		1.64	[1.43-1.92]	Illumina [463250]	N
614	chr6_mcf_hap5	3931609	3931610	rs28421666	20512145	Bei JX	2010-05-30	Nat Genet	A genome-wide association study of nasopharyngeal carcinoma identifies three new susceptibility loci.	Nasopharyngeal carcinoma	1,583 Chinese ancestry cases, 1,894 Chinese ancestry controls	3,507 Chinese ancestry cases, 3,063 Chinese ancestry controls, 284  Chinese ancestry trios	6p21.32	HLA-DQ, HLA-DR	rs28421666-?	0.88	2E-18		1.49	[1.37-1.64]	Illumina [464328]	N
614	chr6_mcf_hap5	3931665	3931666	rs566952760	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs566952760-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
614	chr6_mcf_hap5	3931668	3931669	rs28383322	29227965	Pilling LC	2017-12-01	Aging (Albany NY)	Human longevity: 25 genetic loci associated in 389,166 UK biobank participants.	Parental longevity (mother's attained age)	412,937 British ancestry individuals	NA	6p21.32	HLA-DQA1, HLA-DRB1	rs28383322-C	NR	4E-9				Affymetrix [11535925] (imputed)	N
614	chr6_mcf_hap5	3931668	3931669	rs28383322	29227965	Pilling LC	2017-12-01	Aging (Albany NY)	Human longevity: 25 genetic loci associated in 389,166 UK biobank participants.	Parental longevity (combined parental attained age, Martingale residuals)	389,166 British ancestry individuals	NA	6p21.32	HLA-DRB1, HLA-DQA1	rs28383322-C	0.783	5E-11		0.0182	[0.013-0.024] unit increase	Affymetrix [11535925] (imputed)	N
614	chr6_mcf_hap5	3931705	3931706	rs9271673	33143745	Andlauer TFM	2020-11-04	BMC Med	Treatment- and population-specific genetic risk factors for anti-drug antibodies against interferon-beta: a GWAS.	Neutralising antibody response to interferon beta therapy in multiple sclerosis (antibody titre; IFN?-1a subcutaneous)	up to 2,000 German and Swedish ancestry individuals	up to 757 German and Swedish ancestry individuals	6p21.32		rs9271673-C	NR	2E-28		0.37	[0.31-0.43] unit increase	Illumina [8550834] (imputed)	N
614	chr6_mcf_hap5	3931953	3931954	rs9271695	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	6p21.32	NR	rs9271695-G	0.8044	1E-13		1.09	[1.07-1.12]	Affymetrix, Illumina [16900397] (imputed)	N
614	chr6_mcf_hap5	3932017	3932018	rs35508382	31605138	Avitabile M	2019-09-07	Carcinogenesis	Neural crest-derived tumor neuroblastoma and melanoma share 1p13.2 as susceptibility locus that shows a long-range interaction with the SLC16A1 gene.	Neuroblastoma or malignant cutaneous melanoma	2,101 European ancestry neuroblastoma cases, 12,874 European ancestry malignant cutaneous melanoma cases, 27,405 European ancestry controls	2,039 European ancestry neuroblastoma cases, 508 European ancestry malignant cutaneous melanoma cases, 3,469 European ancestry controls	6p21.32	HLA-DRB1, HLA-DQA1	rs35508382-G	0.09124	2E-6		1.1408801	[1.08-1.20]	NR [NR] (imputed)	N
614	chr6_mcf_hap5	3932071	3932072	rs9271700	33143745	Andlauer TFM	2020-11-04	BMC Med	Treatment- and population-specific genetic risk factors for anti-drug antibodies against interferon-beta: a GWAS.	Neutralising antibody response to interferon beta therapy in multiple sclerosis (presence of antibodies; IFN?-1a subcutaneous)	up to 2,000 German and Swedish ancestry individuals	up to 757 German and Swedish ancestry individuals	6p21.32		rs9271700-G	0.42	5E-27		1.25	[1.01-1.49] unit increase	Illumina [8550834] (imputed)	N
614	chr6_mcf_hap5	3932072	3932073	rs9271701	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6p21.32	NR	rs9271701-T	0.1795	2E-17		1.067	[1.051-1.082]	Affymetrix [15688218] (imputed)	N
614	chr6_mcf_hap5	3932117	3932118	rs35324266	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Squamous cell carcinoma	9,674 European ancestry cases, 625,657 European ancestry controls	NA	6p21.32	HLA-DQA1	rs35324266-T	0.041654	4E-9		1.14	[1.10-1.18]	Affymetrix, Illumina [up to 9061544] (imputed)	N
615	chr6_mcf_hap5	3932338	3932339	rs9271718	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs9271718-T	NR	1E-18		0.0262825	[0.02-0.032] unit increase	Affymetrix [321169] (imputed)	N
615	chr6_mcf_hap5	3932392	3932393	rs9271721	33143745	Andlauer TFM	2020-11-04	BMC Med	Treatment- and population-specific genetic risk factors for anti-drug antibodies against interferon-beta: a GWAS.	Binding antibody response to interferon beta therapy in multiple sclerosis (antibody levels; IFN?-1a subcutaneous and intramuscular)	up to 2,000 German and Swedish ancestry individuals	up to 757 German and Swedish ancestry individuals	6p21.32		rs9271721-G	NR	5E-22		0.32949224	[0.26-0.4] unit increase	Illumina [8550834] (imputed)	N
615	chr6_mcf_hap5	3932481	3932482	rs9271730	33766948	Zhu Z	2021-03-25	Eur Respir J	A large-scale genome-wide association analysis of lung function in the Chinese population identifies novel loci and highlights shared genetic etiology with obesity.	Lung function (FVC) and body mass index	up to 100,285 Chinese ancestry individuals	up to 457,756 European ancestry individuals	6p21.32		rs9271730-G	NR	2E-14	(East Asian)			Affymetrix [NR] (imputed)	N
615	chr6_mcf_hap5	3932481	3932482	rs9271730	33766948	Zhu Z	2021-03-25	Eur Respir J	A large-scale genome-wide association analysis of lung function in the Chinese population identifies novel loci and highlights shared genetic etiology with obesity.	Lung function (FEV1) and body mass index	up to 100,285 Chinese ancestry individuals	up to 457,756 European ancestry individuals	6p21.32		rs9271730-G	NR	8E-15	(East Asian)			Affymetrix [NR] (imputed)	N
615	chr6_mcf_hap5	3932500	3932501	rs9271732	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs9271732-G	NR	3E-8		0.0190926	[0.012-0.026] unit decrease	Affymetrix [321169] (imputed)	N
615	chr6_mcf_hap5	3932550	3932551	rs116189786	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	6p21.32	HLA-DRB1, HLA-DQA1	rs116189786-A	NR	5E-33		1.26	[1.22-1.3]	Affymetrix [9000000] (imputed)	N
615	chr6_mcf_hap5	3932563	3932564	rs9271737	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p21.32	HLA-DQA1	rs9271737-C	0.503238	2E-34		0.036497757	[0.031-0.042] unit increase	Affymetrix [93095623] (imputed)	N
615	chr6_mcf_hap5	3932900	3932901	rs9271762	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs9271762-G	0.304	9E-18	(Complement C4, C4A.C4B.4481.34.2)	0.25	[0.19-0.31] unit increase	Affymetrix [10572788] (imputed)	N
615	chr6_mcf_hap5	3932911	3932912	rs28383323	34454985	Sliz E	2021-08-26	J Allergy Clin Immunol	Uniting biobank resources reveals novel genetic pathways modulating susceptibility for atopic dermatitis.	Atopic dermatitis	22,474 European ancestry cases, 774,187 European ancestry controls	NA	6p21.32	NR	rs28383323-a	0.2381	1E-13		0.89	[0.86-0.92]	Affymetrix, Illumina [16201029] (imputed)	N
615	chr6_mcf_hap5	3932975	3932976	rs34518860	32276964	Shete S	2020-04-10	Cancer Res	A genome-wide association study identifies two novel susceptible regions for squamous cell carcinoma of the head and neck.	Oropharynx cancer	1,144 European ancestry cases, 4,493 European ancestry controls	2,328 European ancestry cases, 3,232 European ancestry controls	6p21.32	HLA-DQA1	rs34518860-G	0.89	3E-17		1.6393442	[1.47-1.85]	Illumina [7858089] (imputed)	N
615	chr6_mcf_hap5	3933027	3933028	rs532322163	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Rheumatoid arthritis	5,348 East Asian ancestry cases, 173,268 East Asian ancestry controls	NA	6p21.32		rs532322163-T	0.133495442	2E-152		0.8641147	[0.8-0.93] unit increase	Illumina [13429970] (imputed)	N
615	chr6_mcf_hap5	3933060	3933061	rs9271768	33766948	Zhu Z	2021-03-25	Eur Respir J	A large-scale genome-wide association analysis of lung function in the Chinese population identifies novel loci and highlights shared genetic etiology with obesity.	Lung function (FEV1)	100,285 Chinese ancestry individuals	NA	6p21.32		rs9271768-A	0.61	4E-12		0.032	L increase	Affymetrix [NR] (imputed)	N
615	chr6_mcf_hap5	3933120	3933121	rs9271770	31089142	Law PJ	2019-05-14	Nat Commun	Association analyses identify 31 new risk loci for colorectal cancer susceptibility.	Colorectal cancer	31,197 European ancestry cases, 61,770 European ancestry controls	NA	6p21.32	NR	rs9271770-A	0.81	4E-8		1.08	[1.05-1.11]	Affymetrix, Illumina [> 10000000] (imputed)	N
615	chr6_mcf_hap5	3933147	3933148	rs9271772	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Naive CD4+ T cell Absolute Count	3,395 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9271772-A	0.75528	3E-13		0.2514	[0.18-0.32] unit increase	Illumina [18332267] (imputed)	N
615	chr6_mcf_hap5	3933147	3933148	rs9271772	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD127 on CD45RA+ CD4+ T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9271772-A	0.75569	2E-13		0.2608	[0.19-0.33] unit increase	Illumina [17954496] (imputed)	N
615	chr6_mcf_hap5	3933181	3933182	rs9271774	28566273	Scott RA	2017-05-31	Diabetes	An Expanded Genome-Wide Association Study of Type 2 Diabetes in Europeans.	Type 2 diabetes	up to 26,676 European ancestry cases, up to 132,532 European ancestry controls	14,545 European ancestry cases, 38,994 European ancestry controls	6p21.32	HLA-DQA1	rs9271774-C	0.74	1E-9		1.09	[1.06-1.12]	Affymetrix, Illumina [at least 11579618] (imputed)	N
615	chr6_mcf_hap5	3933256	3933257	rs114741460	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	6p21.32		rs114741460-C	0.953428	2E-13		0.0731865	[0.054-0.093] unit decrease	NR [11722792] (imputed)	N
615	chr6_mcf_hap5	3933256	3933257	rs114741460	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	6p21.32		rs114741460-C	0.953428	3E-8		0.051812	[0.034-0.07] unit increase	NR [11722792] (imputed)	N
615	chr6_mcf_hap5	3933256	3933257	rs114741460	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in IDL	115,082 European ancestry individuals	NA	6p21.32		rs114741460-C	0.953428	6E-14		0.0768716	[0.057-0.097] unit increase	NR [11722792] (imputed)	N
615	chr6_mcf_hap5	3933256	3933257	rs114741460	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	6p21.32		rs114741460-C	0.953428	4E-13		0.0724454	[0.053-0.092] unit increase	NR [11722792] (imputed)	N
615	chr6_mcf_hap5	3933256	3933257	rs114741460	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	6p21.32		rs114741460-C	0.953428	1E-14		0.078791	[0.059-0.099] unit increase	NR [11722792] (imputed)	N
615	chr6_mcf_hap5	3933477	3933477	rs9281962	33143745	Andlauer TFM	2020-11-04	BMC Med	Treatment- and population-specific genetic risk factors for anti-drug antibodies against interferon-beta: a GWAS.	Binding antibody response to interferon beta therapy in multiple sclerosis (antibody levels; IFN?-1a subcutaneous)	up to 2,000 German and Swedish ancestry individuals	up to 757 German and Swedish ancestry individuals	6p21.32		rs9281962-T	0.44	5E-32		0.5091026	[0.42-0.59] unit increase	Illumina [8550834] (imputed)	N
615	chr6_mcf_hap5	3933535	3933536	rs116352702	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs116352702-A	0.954	8E-18	(conditional)	0.543	[0.4-0.68]	Illumina [11270530] (imputed)	N
615	chr6_mcf_hap5	3933974	3933975	rs3104389	32769997	Zhou W	2020-08-07	Nat Commun	GWAS of thyroid stimulating hormone highlights pleiotropic effects and inverse association with thyroid cancer.	Thyroid stimulating hormone levels	119,715 European ancestry individuals	NA	6p21.32	HLA-DRB1, HLA-DQA1	rs3104389-A	0.424293733420786	6E-12		0.0623	[0.045-0.08] SD increase	Illumina [22400000] (imputed)	N
615	chr6_mcf_hap5	3933994	3933995	rs9271853	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C11orf87	5,363 Icelandic ancestry individuals	NA	6p21.32		rs9271853-T	0.3105	7E-12		0.135762	[0.097-0.175] unit decrease	Illumina [7506463] (imputed)	N
615	chr6_mcf_hap5	3934100	3934101	rs9271858	23291585	Fakiola M	2013-01-06	Nat Genet	Common variants in the HLA-DRB1-HLA-DQA1 HLA class II region are associated with susceptibility to visceral leishmaniasis.	Leishmaniasis (visceral)	989 Indian ancestry cases, 1,089 Indian ancestry controls, 357 Brazilian ancestry cases, 1,613 Brazilian ancestry unaffected relatives	951 Indian ancestry cases, 990 Indian ancestry controls	6p21.32	HLA, HLA-DRB1, HLA-DQA1	rs9271858-G	0.39	3E-17		1.41	[1.30-1.52]	Illumina [521134]	N
615	chr6_mcf_hap5	3934153	3934154	rs28362132	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CCL19	5,367 Icelandic ancestry individuals	NA	6p21.32		rs28362132-T	0.0511	8E-36		0.540362	[0.46-0.63] unit increase	Illumina [7506463] (imputed)	N
615	chr6_mcf_hap5	3934475	3934476	rs9271880	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs9271880-C	NR	2E-10		0.0194381	[0.013-0.025] unit decrease	Affymetrix [319769] (imputed)	N
615	chr6_mcf_hap5	3934475	3934476	rs9271880	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs9271880-C	NR	5E-10		0.0190783	[0.013-0.025] unit decrease	Affymetrix [319769] (imputed)	N
615	chr6_mcf_hap5	3935419	3935420	rs9271925	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	6p21.32	HLA-DQA1	rs9271925-G	0.3014	3E-9		0.0266219	[0.018-0.035] unit decrease	Affymetrix [~ 2500000] (imputed)	N
615	chr6_mcf_hap5	3935603	3935603	rs9281971	33143745	Andlauer TFM	2020-11-04	BMC Med	Treatment- and population-specific genetic risk factors for anti-drug antibodies against interferon-beta: a GWAS.	Neutralising antibody response to interferon beta therapy in multiple sclerosis (presence of antibodies; all treatment preparations)	up to 2,000 German and Swedish ancestry individuals	up to 757 German and Swedish ancestry individuals	6p21.32		rs9281971-TTTTTTT	0.36	2E-17		0.6	[-0.46--0.74] unit decrease	Illumina [8550834] (imputed)	N
615	chr6_mcf_hap5	3935603	3935603	rs9281971	33143745	Andlauer TFM	2020-11-04	BMC Med	Treatment- and population-specific genetic risk factors for anti-drug antibodies against interferon-beta: a GWAS.	Neutralising antibody response to interferon beta therapy in multiple sclerosis (antibody titre; all treatment preparations)	up to 2,000 German and Swedish ancestry individuals	up to 757 German and Swedish ancestry individuals	6p21.32		rs9281971-TTTTTTT	NR	2E-17		0.16	[-0.12--0.2] unit decrease	Illumina [8550834] (imputed)	N
615	chr6_mcf_hap5	3935898	3935899	rs3129769	26272072	Jiang X	2015-08-13	Rheumatology (Oxford)	An Immunochip-based interaction study of contrasting interaction effects with smoking in ACPA-positive versus ACPA-negative rheumatoid arthritis.	ACPA-positive rheumatoid arthritis (smoking interaction)	340 European ancestry never-smoker cases, 493 European ancestry ever-smoker cases, 746 European ancestry never-smoker controls, 994 European ancestry ever-smoker controls	187 European ancestry never-smoker cases, 421 European ancestry ever-smoker cases, 461 European ancestry never-smoker controls, 447 European ancestry ever-smoker controls	6p21.32	NR	rs3129769-?	NR	3E-11	(adjusted for HLA shared epitope)	1.724138	[1.33-2.44]	Illumina [133648] (imputed)	N
615	chr6_mcf_hap5	3935970	3935971	rs9271947	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	6p21.32		rs9271947-T	NR	5E-12		0.0142	[0.01-0.018] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
615	chr6_mcf_hap5	3936216	3936217	rs114798579	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	6p21.32	NR	rs114798579-?	NR	7E-19	(conditional)			Affymetrix [15688218] (imputed)	N
615	chr6_mcf_hap5	3936310	3936311	rs140145058	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large LDL	115,082 European ancestry individuals	NA	6p21.32		rs140145058-A	0.864668	1E-15		0.0486929	[0.037-0.061] unit decrease	NR [11722792] (imputed)	N
615	chr6_mcf_hap5	3936310	3936311	rs140145058	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	LDL cholesterol levels	115,082 European ancestry individuals	NA	6p21.32		rs140145058-A	0.864668	7E-16		0.0494415	[0.037-0.061] unit decrease	NR [11722792] (imputed)	N
615	chr6_mcf_hap5	3936310	3936311	rs140145058	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large LDL	115,082 European ancestry individuals	NA	6p21.32		rs140145058-A	0.864668	1E-15		0.048909	[0.037-0.061] unit decrease	NR [11722792] (imputed)	N
615	chr6_mcf_hap5	3936310	3936311	rs140145058	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large LDL	115,082 European ancestry individuals	NA	6p21.32		rs140145058-A	0.864668	2E-15		0.0482138	[0.036-0.06] unit decrease	NR [11722792] (imputed)	N
615	chr6_mcf_hap5	3936903	3936904	rs146668528	29785011	Zhu Z	2018-05-21	Nat Genet	A genome-wide cross-trait analysis from UK Biobank highlights the shared genetic architecture of asthma and allergic diseases.	Allergic disease (asthma, hay fever or eczema)	25,685 European ancestry allergic diseases cases, 76,768 European ancestry controls	NA	6p21.32	HLA-DQA1	rs146668528-?	NR	5E-12		1.1904762	[1.12-1.25]	Affymetrix [74888535] (imputed)	N
615	chr6_mcf_hap5	3936965	3936966	rs1281943	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs1281943-C	NR	2E-10		0.0328506	[0.023-0.043] unit increase	Affymetrix [321169] (imputed)	N
615	chr6_mcf_hap5	3937936	3937937	rs9461780	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	6p21.32	HLA-DQA1	rs9461780-T	0.075286	3E-15		0.033892684	[0.025-0.042] unit increase	Affymetrix [93095623] (imputed)	N
615	chr6_mcf_hap5	3937946	3937947	rs9272050	33794208	Bowden SJ	2021-04-01	Lancet Oncol	Genetic variation in cervical preinvasive and invasive disease: a genome-wide association study.	Cervical intraepithelial neoplasia grade 3 and invasive cervical cancer	764 European ancestry invasive cervical cancer cases, 4,005 European ancestry cervical intraepithelial neoplasia grade 3 cases, 145,545 European ancestry controls	NA	6p21.32	HLA-DQA1	rs9272050-?	NR	3E-28		1.27	[1.21-1.32]	Affymetrix [9600464] (imputed)	N
615	chr6_mcf_hap5	3937946	3937947	rs9272050	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cervical cancer	6,563 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs9272050-G	NR	1E-39		1.267	NR	Affymetrix [7846216] (imputed)	N
615	chr6_mcf_hap5	3937946	3937947	rs9272050	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p21.32	HLA-DRB1	rs9272050-G	0.38	1E-30		1.19	[1.17-1.21] unit increase	Illumina [at least 560000] (imputed)	N
615	chr6_mcf_hap5	3938362	3938363	rs9272071	33143745	Andlauer TFM	2020-11-04	BMC Med	Treatment- and population-specific genetic risk factors for anti-drug antibodies against interferon-beta: a GWAS.	Binding antibody response to interferon beta therapy in multiple sclerosis (antibody levels; all treatment preparations)	up to 2,000 German and Swedish ancestry individuals	up to 757 German and Swedish ancestry individuals	6p21.32		rs9272071-C	0.32	5E-18		0.22615278	[-0.17--0.28] unit decrease	Illumina [8550834] (imputed)	N
615	chr6_mcf_hap5	3938862	3938863	rs9272105	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	6p21.32	NR	rs9272105-?	NR	5E-12				Affymetrix [~ 8270000] (imputed)	N
615	chr6_mcf_hap5	3938862	3938863	rs9272105	22807686	Li S	2012-07-12	PLoS Genet	GWAS identifies novel susceptibility loci on 6p21.32 and 21q21.3 for hepatocellular carcinoma in chronic hepatitis B virus carriers.	Hepatocellular carcinoma	1,538 Han Chinese ancestry HBV-positive HCC cases, 1,465 Han Chinese ancestry chronic HBV carriers	4,431 Han Chinese ancestry HBV-positive HCC cases, 4,725 Han Chinese ancestry chronic HBV carriers	6p21.32	HLA-DRB1, HLA-DQA1	rs9272105-A	0.45	5E-22		1.28	[1.22-1.35]	NR [523663]	N
615	chr6_mcf_hap5	3938862	3938863	rs9272105	21502966	Weber F	2011-04-19	Pharmacogenomics J	Single-nucleotide polymorphisms in HLA- and non-HLA genes associated with the development of antibodies to interferon-? therapy in multiple sclerosis patients.	Response to interferon beta therapy	178 European ancestry antibody-positive individuals, 184 European ancestry antibody-negative individuals	350 European ancestry antibody-positive individuals, 468 European ancestry antibody-negative individuals	6p21.32	HLA-DRB1, HLA-DQA1	rs9272105-A	0.44	4E-10		0.26	[NR] unit increase	Illumina [~ 317000]	N
615	chr6_mcf_hap5	3938866	3938867	rs3104376	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	6p21.32	Intergenic	rs3104376-T	NR	2E-28		0.0514741	[0.042-0.061] unit increase	Illumina [13520550] (imputed)	N
615	chr6_mcf_hap5	3938920	3938921	rs35242582	28029757	Merkel PA	2016-12-28	Arthritis Rheumatol	Identification of Functional and Expression Polymorphisms Associated With Risk for Antineutrophil Cytoplasmic Autoantibody-Associated Vasculitis.	Antineutrophil cytoplasmic antibody-associated vasculitis	1,015 European ancestry granulomatosis with polyangiitis cases, 206 European ancestry microscopic polyangiitis cases, 3,258 European ancestry controls.	541 European ancestry granulomatosis with polyangiitis cases, 30 European ancestry microscopic polyangiitis cases, 1,465 European ancestry controls.	6p21.32	HLA-DQA1	rs35242582-A	0.74	6E-23		1.6	1.46-1.76	Affymetrix [at least 333035] (imputed)	N
615	chr6_mcf_hap5	3939237	3939238	rs3104373	27386562	Andlauer TF	2016-06-17	Sci Adv	Novel multiple sclerosis susceptibility loci implicated in epigenetic regulation.	Multiple sclerosis	4,888 German ancestry cases, 10,395 German ancestry controls	2,903 Sardinian ancestry cases, 3,323 Sardinian ancestry controls	6p21.32	HLA-DRB1	rs3104373-T		1E-234		2.9	[2.72-3.09]	Illumina [at least 8143088] (imputed)	N
615	chr6_mcf_hap5	3939266	3939267	rs9272116	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Creatinine levels	110,051 European ancestry individuals	NA	6p21.32		rs9272116-T	0.506915	1E-15		0.0282801	[0.021-0.035] unit decrease	NR [11722792] (imputed)	N
615	chr6_mcf_hap5	3939447	3939448	rs13214992	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	6p21.32	intergenic	rs13214992-A	0.0562	3E-29		0.1055	[0.087-0.124] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
615	chr6_mcf_hap5	3939533	3939534	rs9272131	30450575	Hojfeldt SG	2018-11-18	Br J Haematol	Genetic predisposition to PEG-asparaginase hypersensitivity in children treated according to NOPHO ALL2008.	PEG-asparaginase hypersensitivity without enzyme activity in childhood acute lymphoblastic leukaemia	59 European ancestry cases, 772 European ancestry controls	NA	6p21.32	HLA-DQA1, HLA-DQB1, HLA-DRB1	rs9272131-T	0.11	9E-6		3.01	[1.85-4.91]	Illumina [NR]	N
615	chr6_mcf_hap5	3939665	3939666	rs9272143	28806749	Leo PJ	2017-08-14	PLoS Genet	Defining the genetic susceptibility to cervical neoplasia-A genome-wide association study.	Cervical cancer	2,866 European ancestry cases, 6,481 European ancestry controls	NA	6p21.32	HLA-DRB1	rs9272143-?	NR	5E-15		1.3513513	[NR]	Illumina [10863230] (imputed)	N
615	chr6_mcf_hap5	3939665	3939666	rs9272143	23482656	Chen D	2013-03-12	J Natl Cancer Inst	Genome-wide association study of susceptibility loci for cervical cancer.	Cervical cancer	1,034 European ancestry cases, 3,948 European ancestry controls	1,140 European ancestry cases, 1,058 European ancestry controls	6p21.32	HLA-DRB1, HLA-DQA1	rs9272143-?	NR	3E-22		1.49	[1.37-1.61]	Illumina [632668]	N
615	chr6_mcf_hap5	3939881	3939882	rs9272154	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p21.32	NR	rs9272154-?	NR	9E-12		0.0937	[0.067-0.121] unit increase	Illumina [at least 560000] (imputed)	N
615	chr6_mcf_hap5	3940150	3940151	rs72848251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs72848251-G	0.805325	4E-21		0.0493811	[0.039-0.06] unit decrease	NR [11722792] (imputed)	N
615	chr6_mcf_hap5	3940150	3940151	rs72848251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Remnant cholesterol (non-HDL, non-LDL -cholesterol)	115,082 European ancestry individuals	NA	6p21.32		rs72848251-G	0.805325	8E-20		0.0484938	[0.038-0.059] unit decrease	NR [11722792] (imputed)	N
615	chr6_mcf_hap5	3940150	3940151	rs72848251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of apolipoprotein B to apolipoprotein A1 levels	115,082 European ancestry individuals	NA	6p21.32		rs72848251-G	0.805325	6E-19		0.0468108	[0.036-0.057] unit decrease	NR [11722792] (imputed)	N
615	chr6_mcf_hap5	3940150	3940151	rs72848251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs72848251-G	0.805325	1E-22		0.0513513	[0.041-0.062] unit decrease	NR [11722792] (imputed)	N
615	chr6_mcf_hap5	3940150	3940151	rs72848251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs72848251-G	0.805325	2E-21		0.0496998	[0.039-0.06] unit decrease	NR [11722792] (imputed)	N
615	chr6_mcf_hap5	3940150	3940151	rs72848251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very small VLDL particles	115,082 European ancestry individuals	NA	6p21.32		rs72848251-G	0.805325	2E-20		0.048766	[0.038-0.059] unit decrease	NR [11722792] (imputed)	N
615	chr6_mcf_hap5	3940150	3940151	rs72848251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large LDL particles	115,082 European ancestry individuals	NA	6p21.32		rs72848251-G	0.805325	2E-23		0.0532642	[0.043-0.064] unit decrease	NR [11722792] (imputed)	N
615	chr6_mcf_hap5	3940150	3940151	rs72848251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of LDL particles	115,082 European ancestry individuals	NA	6p21.32		rs72848251-G	0.805325	2E-22		0.0522239	[0.042-0.063] unit decrease	NR [11722792] (imputed)	N
615	chr6_mcf_hap5	3940150	3940151	rs72848251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in VLDL	115,082 European ancestry individuals	NA	6p21.32		rs72848251-G	0.805325	4E-26		0.0566218	[0.046-0.067] unit decrease	NR [11722792] (imputed)	N
615	chr6_mcf_hap5	3940150	3940151	rs72848251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs72848251-G	0.805325	1E-17		0.0444632	[0.034-0.055] unit decrease	NR [11722792] (imputed)	N
615	chr6_mcf_hap5	3940150	3940151	rs72848251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	6p21.32		rs72848251-G	0.805325	4E-24		0.0541049	[0.044-0.065] unit decrease	NR [11722792] (imputed)	N
615	chr6_mcf_hap5	3940150	3940151	rs72848251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein B levels	115,082 European ancestry individuals	NA	6p21.32		rs72848251-G	0.805325	4E-22		0.0517157	[0.041-0.062] unit decrease	NR [11722792] (imputed)	N
615	chr6_mcf_hap5	3940150	3940151	rs72848251	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	6p21.32	HLA-DQA1	rs72848251-G	0.804518	1E-38		0.0349134	[0.03-0.04] unit decrease	Affymetrix [NR] (imputed)	N
615	chr6_mcf_hap5	3940669	3940670	rs147841808	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in IDL	115,082 European ancestry individuals	NA	6p21.32		rs147841808-C	0.867699	2E-14		0.0459272	[0.034-0.058] unit decrease	NR [11722792] (imputed)	N
615	chr6_mcf_hap5	3940669	3940670	rs147841808	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large LDL	115,082 European ancestry individuals	NA	6p21.32		rs147841808-C	0.867699	2E-15		0.0492534	[0.037-0.061] unit decrease	NR [11722792] (imputed)	N
615	chr6_mcf_hap5	3940669	3940670	rs147841808	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in IDL	115,082 European ancestry individuals	NA	6p21.32		rs147841808-C	0.867699	8E-17		0.0499703	[0.038-0.062] unit decrease	NR [11722792] (imputed)	N
615	chr6_mcf_hap5	3940669	3940670	rs147841808	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small LDL	115,082 European ancestry individuals	NA	6p21.32		rs147841808-C	0.867699	2E-13		0.0454527	[0.033-0.058] unit decrease	NR [11722792] (imputed)	N
615	chr6_mcf_hap5	3940669	3940670	rs147841808	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large LDL	115,082 European ancestry individuals	NA	6p21.32		rs147841808-C	0.867699	3E-14		0.0463596	[0.034-0.058] unit decrease	NR [11722792] (imputed)	N
615	chr6_mcf_hap5	3940669	3940670	rs147841808	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in LDL	115,082 European ancestry individuals	NA	6p21.32		rs147841808-C	0.867699	3E-14		0.0468543	[0.035-0.059] unit decrease	NR [11722792] (imputed)	N
615	chr6_mcf_hap5	3940669	3940670	rs147841808	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in IDL	115,082 European ancestry individuals	NA	6p21.32		rs147841808-C	0.867699	4E-14		0.0455951	[0.034-0.057] unit decrease	NR [11722792] (imputed)	N
615	chr6_mcf_hap5	3940669	3940670	rs147841808	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Clinical LDL cholesterol levels	115,082 European ancestry individuals	NA	6p21.32		rs147841808-C	0.867699	4E-16		0.0503325	[0.038-0.062] unit decrease	NR [11722792] (imputed)	N
615	chr6_mcf_hap5	3940669	3940670	rs147841808	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium VLDL	115,082 European ancestry individuals	NA	6p21.32		rs147841808-C	0.867699	7E-22		0.0592176	[0.047-0.071] unit decrease	NR [11722792] (imputed)	N
615	chr6_mcf_hap5	3940669	3940670	rs147841808	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in IDL	115,082 European ancestry individuals	NA	6p21.32		rs147841808-C	0.867699	2E-12		0.0422918	[0.031-0.054] unit decrease	NR [11722792] (imputed)	N
615	chr6_mcf_hap5	3940669	3940670	rs147841808	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in IDL	115,082 European ancestry individuals	NA	6p21.32		rs147841808-C	0.867699	5E-13		0.0434275	[0.032-0.055] unit decrease	NR [11722792] (imputed)	N
615	chr6_mcf_hap5	3940815	3940816	rs553685714	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	6p21.32	HLA-DQA1	rs553685714-G	0.00566900000000004	5E-30		0.24839339	[0.21-0.29] unit increase	Affymetrix [93095623] (imputed)	N
615	chr6_mcf_hap5	3940815	3940816	rs553685714	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	6p21.32	HLA-DQA1	rs553685714-G	0.005664	1E-34		0.2682929	[0.23-0.31] unit decrease	Affymetrix [93095623] (imputed)	N
615	chr6_mcf_hap5	3940999	3941000	rs3104371	34536413	Daya M	2021-09-15	J Allergy Clin Immunol	Multi-ethnic genome-wide and HLA association study of total serum IgE.	IgE levels	5,008 African American individuals, 12,908 European ancestry individuals, 3,985 Hispanic individuals	NA	6p21.32		rs3104371-G	0.17	4E-18				Affymetrix, Illumina [NR] (imputed)	N
615	chr6_mcf_hap5	3941131	3941132	rs9272219	32792643	Romero-Hidalgo S	2020-08-13	Sci Rep	Native American ancestry significantly contributes to neuromyelitis optica susceptibility in the admixed Mexican population.	Neuromyelitis optica	164 Mexican cases, 1,208 Mexican controls	NA	6p21.32	HLA-DQA1	rs9272219-A	0.42	8E-10		2.48	[1.86-3.32]	Illumina [252805]	N
615	chr6_mcf_hap5	3941131	3941132	rs9272219	19571809	Shi J	2009-07-01	Nature	Common variants on chromosome 6p22.1 are associated with schizophrenia.	Schizophrenia	2,681 European ancestry cases, 2,653 European ancestry controls, 1,286 African American cases, 973 African American controls	5,327 European ancestry cases, 16,424 European ancestry controls	6p21.32	HLA-DQA1	rs9272219-G	0.72	7E-8	(EA)	1.14	[NR]	Affymetrix [up to 843798]	N
615	chr6_mcf_hap5	3941258	3941259	rs9272226	34212547	An J	2021-07-01	Allergy Asthma Immunol Res	Genome-Wide Association Study of Korean Asthmatics: A Comparison With UK Asthmatics.	Adult asthma	1,386 Korean ancestry cases, 5,205 Korean ancestry controls	NA	6p21.32		rs9272226-C	0.43	6E-7		1.27	[1.16-1.4]	Affymetrix [4922160] (imputed)	N
615	chr6_mcf_hap5	3941344	3941345	rs3104369	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CXCL2;CXCL3	5,366 Icelandic ancestry individuals	NA	6p21.32		rs3104369-T	0.3681	6E-26		0.203573	[0.17-0.24] unit increase	Illumina [7506463] (imputed)	N
615	chr6_mcf_hap5	3941344	3941345	rs3104369	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD45RA+ CD8+ T cell Absolute Count	3,395 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs3104369-C	0.7732	1E-9		0.1747	[0.12-0.23] unit increase	Illumina [18332267] (imputed)	N
615	chr6_mcf_hap5	3941344	3941345	rs3104369	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs3104369-?	NR	1E-11				Affymetrix [~ 8270000] (imputed)	N
615	chr6_mcf_hap5	3941344	3941345	rs3104369	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Adult onset asthma or type 2 diabetes	33,418 European ancestry asthma cases, 393,186 European ancestry asthma controls, 159,208 European ancestry diabetes cases and controls	NA	6p21.32	NR	rs3104369-?	NR	9E-15				Affymetrix [up to 8270000] (imputed)	N
615	chr6_mcf_hap5	3941345	3941346	rs17205170	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	6p21.32	HLA-DQA1	rs17205170-?	NR	1E-44		0.0464	[0.041-0.052] unit increase	Affymetrix [5701386] (imputed)	N
615	chr6_mcf_hap5	3941493	3941494	rs17205212	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	334,468 European ancestry, NR ancestry individuals	NA	6p21.32		rs17205212-?	NR	5E-8				Affymetrix [NR] (imputed)	N
615	chr6_mcf_hap5	3941528	3941528	rs139299944	33204752	Butler-Laporte G	2020-09-24	Open Forum Infect Dis	Genetic Determinants of Antibody-Mediated Immune Responses to Infectious Diseases Agents: A Genome-Wide and HLA Association Study.	Human herpes virus 7 U14 antibody levels	8,528 White British ancestry individuals	NA	6p21.32	HLA-DQA1	rs139299944-C	0.658	4E-12		0.11	[0.079-0.141] unit increase	NR [25472218] (imputed)	N
615	chr6_mcf_hap5	3941652	3941653	rs9272242	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4 on Effector Memory CD4+ T cell	2,912 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9272242-C	0.6302	4E-12		0.2215	[0.16-0.28] unit increase	Illumina [17945888] (imputed)	N
615	chr6_mcf_hap5	3941734	3941735	rs9272245	33794208	Bowden SJ	2021-04-01	Lancet Oncol	Genetic variation in cervical preinvasive and invasive disease: a genome-wide association study.	Cervical intraepithelial neoplasia grade 3	4,005 European ancestry cases, 145,545 European ancestry controls	NA	6p21.32	HLA-DQA1	rs9272245-?	NR	5E-12		1.44	[1.30-1.60]	Affymetrix [9600464] (imputed)	N
615	chr6_mcf_hap5	3941869	3941870	rs2040406	20453840	Sanna S	2010-05-09	Nat Genet	Variants within the immunoregulatory CBLB gene are associated with multiple sclerosis.	Multiple sclerosis	882 Sardinian cases, 872 Sardinian controls	1,775 Sardinian cases, 2,005 Sardinian controls	6p21.32	HLA-DQB1, HLA-DRB	rs2040406-G	0.26	1E-20		2.05	[NR]	Affymetrix [6607266] (imputed)	N
615	chr6_mcf_hap5	3942039	3942040	rs28393315	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	6p21.32		rs28393315-A	0.739	9E-22				Affymetrix [10369434] (imputed)	N
615	chr6_mcf_hap5	3942157	3942158	rs9272263	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DQA1	rs9272263-C	NR	2E-12		0.0278269	[0.02-0.036] unit decrease	Affymetrix [323858] (imputed)	N
615	chr6_mcf_hap5	3942157	3942158	rs9272263	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	HLA-DQA1	rs9272263-A	NR	6E-10		0.0226602	[0.015-0.03] unit decrease	Affymetrix [127266] (imputed)	N
615	chr6_mcf_hap5	3942157	3942158	rs9272263	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p21.32	HLA-DQA1	rs9272263-C	NR	2E-8		0.0221565	[0.014-0.03] unit decrease	Affymetrix [323858] (imputed)	N
615	chr6_mcf_hap5	3942183	3942184	rs62404084	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antihistamines for systemic use)	13,984 European ancestry cases, 137,652 European ancestry controls, 10,163 East Asian ancestry cases, 168,563 East Asian ancestry controls	NA	6p21.32		rs62404084-T	NR	5E-11		0.0852	[0.06-0.11] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
615	chr6_mcf_hap5	3942183	3942184	rs62404084	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6p21.32	NR	rs62404084-C	0.8069	1E-43		1.1116052	[1.1-1.13]	Affymetrix [15688218] (imputed)	N
615	chr6_mcf_hap5	3942349	3942350	rs3104367	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Asthma	28,399 European ancestry cases, 128,843 European ancestry controls	NA	6p21.32	HLA-DRB5, HLA-DQA1	rs3104367-?	NR	1E-40		1.1467891	[1.12-1.17]	Illumina [13747813] (imputed)	N
615	chr6_mcf_hap5	3942522	3942523	rs1391373	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs1391373-C	NR	2E-10		0.0185525	[0.013-0.024] unit decrease	Affymetrix [321016] (imputed)	N
615	chr6_mcf_hap5	3942658	3942659	rs1391371	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (glucocorticoids)	17,352 European ancestry cases, 188,348 European ancestry controls, 13,102 East Asian ancestry cases, 165,624 East Asian ancestry controls	NA	6p21.32		rs1391371-T	NR	1E-37		0.1229	[0.1-0.14] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
615	chr6_mcf_hap5	3942658	3942659	rs1391371	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (glucocorticoids)	17,352 European ancestry cases, 188,348 European ancestry controls	NA	6p21.32	HLA-DQA1	rs1391371-T	0.202145	2E-48		0.20412196	[0.18-0.23] unit increase	Affymetrix [7288503] (imputed)	N
615	chr6_mcf_hap5	3942658	3942659	rs1391371	30643255	Kristjansson RP	2019-01-14	Nat Genet	A loss-of-function variant in ALOX15 protects against nasal polyps and chronic rhinosinusitis.	Nasal polyps	86 European ancestry whole-genome sequenced cases, 4,280 European ancestry cases, 13,941 European ancestry whole-genome sequenced controls, 700,740 European ancestry controls	NA	6p21.32	HLA-DQA1	rs1391371-T	0.195	7E-49		1.47	[1.39-1.54]	Affymetrix, Illumina [up to 37123566] (imputed)	N
615	chr6_mcf_hap5	3942658	3942659	rs1391371	30643255	Kristjansson RP	2019-01-14	Nat Genet	A loss-of-function variant in ALOX15 protects against nasal polyps and chronic rhinosinusitis.	Chronic rhinosinusitis	251 European ancestry whole-genome sequenced cases, 5,357 European ancestry cases, 13,957 European ancestry whole-genome sequenced controls, 746,129 European ancestry controls	NA	6p21.32	HLA-DQA1	rs1391371-T	0.195	4E-15		1.22	(1.16-1.28)	Affymetrix, Illumina [up to 37123566] (imputed)	N
615	chr6_mcf_hap5	3942685	3942686	rs3129774	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	6p21.32		rs3129774-C	0.559887	9E-21		0.0390299	[0.031-0.047] unit decrease	NR [11722792] (imputed)	N
615	chr6_mcf_hap5	3942685	3942686	rs3129774	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs3129774-C	0.55995	2E-20		0.0386367	[0.03-0.047] unit decrease	NR [11722792] (imputed)	N
615	chr6_mcf_hap5	3942685	3942686	rs3129774	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6p21.32		rs3129774-C	0.55995	2E-20		0.0377974	[0.03-0.046] unit decrease	NR [11722792] (imputed)	N
615	chr6_mcf_hap5	3942685	3942686	rs3129774	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6p21.32		rs3129774-C	0.55995	7E-20		0.0378012	[0.03-0.046] unit increase	NR [11722792] (imputed)	N
615	chr6_mcf_hap5	3942685	3942686	rs3129774	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	6p21.32		rs3129774-C	0.559887	2E-21		0.0397338	[0.032-0.048] unit increase	NR [11722792] (imputed)	N
615	chr6_mcf_hap5	3942685	3942686	rs3129774	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6p21.32		rs3129774-C	0.55995	1E-18		0.0363057	[0.028-0.044] unit increase	NR [11722792] (imputed)	N
615	chr6_mcf_hap5	3942685	3942686	rs3129774	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	6p21.32		rs3129774-C	0.559887	1E-16		0.0342504	[0.026-0.042] unit increase	NR [11722792] (imputed)	N
615	chr6_mcf_hap5	3942685	3942686	rs3129774	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs3129774-C	0.55995	8E-20		0.0387931	[0.03-0.047] unit increase	NR [11722792] (imputed)	N
615	chr6_mcf_hap5	3942685	3942686	rs3129774	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6p21.32		rs3129774-C	0.55995	1E-19		0.0366269	[0.029-0.045] unit increase	NR [11722792] (imputed)	N
615	chr6_mcf_hap5	3942685	3942686	rs3129774	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	6p21.32		rs3129774-C	0.559954	9E-20		0.0375502	[0.029-0.046] unit increase	NR [11722792] (imputed)	N
615	chr6_mcf_hap5	3942685	3942686	rs3129774	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	6p21.32		rs3129774-C	0.559887	6E-19		0.0366323	[0.029-0.045] unit increase	NR [11722792] (imputed)	N
615	chr6_mcf_hap5	3942685	3942686	rs3129774	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs3129774-C	0.55995	8E-21		0.0392074	[0.031-0.047] unit increase	NR [11722792] (imputed)	N
615	chr6_mcf_hap5	3942685	3942686	rs3129774	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6p21.32		rs3129774-C	0.55995	6E-20		0.0370631	[0.029-0.045] unit increase	NR [11722792] (imputed)	N
615	chr6_mcf_hap5	3942685	3942686	rs3129774	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	6p21.32		rs3129774-C	0.559954	3E-17		0.0356128	[0.027-0.044] unit increase	NR [11722792] (imputed)	N
615	chr6_mcf_hap5	3942796	3942797	rs9272309	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	6p21.32	NR	rs9272309-A	0.620099	1E-19		0.0128993	[0.01-0.016] unit increase	Affymetrix [16578495] (imputed)	N
615	chr6_mcf_hap5	3943237	3943238	rs9272346	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	6p21.32	HLA-DQA1	rs9272346-A	0.61	2E-156				NR [> 9500000] (imputed)	N
615	chr6_mcf_hap5	3943237	3943238	rs9272346	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (childhood onset)	9,433 British ancestry cases, 318,237 British ancestry controls	NA	6p21.32	NR	rs9272346-A	0.59	4E-37		1.13		Affymetrix [10894596] (imputed)	N
615	chr6_mcf_hap5	3943237	3943238	rs9272346	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (age of onset)	37,846 British ancestry individuals	NA	6p21.32	NR	rs9272346-A	0.59	7E-8				Affymetrix [10894596] (imputed)	N
615	chr6_mcf_hap5	3943237	3943238	rs9272346	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (adult onset)	21,564 British ancestry cases, 318,237 British ancestry controls	NA	6p21.32	NR	rs9272346-A	0.59	2E-47		1.13		Affymetrix [10894596] (imputed)	N
615	chr6_mcf_hap5	3943237	3943238	rs9272346	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls, 2,149 African ancestry cases, 6,055 African ancestry controls, 1,239 Japanese ancestry cases, 3,976 Japanese ancestry controls, 606 Latino cases, 792 Latino controls	NA	6p21.32	HLA-DRB1, HLA-DQA1	rs9272346-A	0.56	6E-24		1.16	[1.12-1.19]	Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
615	chr6_mcf_hap5	3943237	3943238	rs9272346	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls	NA	6p21.32	HLA-DRB1, HLA-DQA1	rs9272346-A	0.56	2E-28		0.15	[0.13-0.17] unit increase	Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
615	chr6_mcf_hap5	3943237	3943238	rs9272346	27130862	Sarnowski C	2016-04-06	J Allergy Clin Immunol	Identification of a new locus at 16q12 associated with time to asthma onset.	Asthma (time to onset)	5,462 European ancestry cases, 8,424 European ancestry controls	NA	6p21.32	HLA-DQA1	rs9272346-A	0.59	2E-8		1.13	[1.08-1.17]	Illumina [2387926] (imputed)	N
615	chr6_mcf_hap5	3943237	3943238	rs9272346	23181788	Lasky-Su J	2012-12-04	Clin Exp Allergy	HLA-DQ strikes again: genome-wide association study further confirms HLA-DQ in the diagnosis of asthma among adults.	Asthma	Up to 1,238 European ancestry cases, up to 2,617 European ancestry controls	Up to 1,837 European ancestry cases, up to 3,803 European ancestry controls, up to 2,806 cases, up to 2,150 controls, up to 603 Costa Rican ancestry cases and their parents	6p21.32	HLA-DQA1	rs9272346-?	NR	2E-8	(Adult)			Affymetrix [455089]	N
615	chr6_mcf_hap5	3943237	3943238	rs9272346	18978792	Cooper JD	2008-11-02	Nat Genet	Meta-analysis of genome-wide association study data identifies additional type 1 diabetes risk loci.	Type 1 diabetes	3,561 European ancestry cases, 4,646 European ancestry controls	6,225 European ancestry cases, 6,946 European ancestry controls, 3,064 European ancestry trios from 2,828 families	6p21.32	HLA	rs9272346-G	NR	6E-129				Affymetrix [up to 335565]	N
615	chr6_mcf_hap5	3943237	3943238	rs9272346	17554300	Wellcome Trust Case Control Consortium	2007-06-07	Nature	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Type 1 diabetes	1,963 European ancestry cases, 2,938 European ancestry controls	(see Todd 2007)	6p21.32	MHC	rs9272346-G	0.61	5E-134		5.49	[4.83-6.24]	Affymetrix [469557]	N
615	chr6_mcf_hap5	3943519	3943520	rs9272371	32737300	Sallah N	2020-07-31	Nat Commun	Distinct genetic architectures and environmental factors associate with host response to the ?2-herpesvirus infections.	Anti-Epstein-Barr virus nuclear antigen (EBNA) IgG levels	4,365 Ugandan ancestry individuals	2,162  European ancestry individuals	6p21.32	HLA-DQA1	rs9272371-C	0.3	4E-44	(Ugandan)	0.36	[0.32-0.40] unit decrease	Illumina [14929118] (imputed)	N
615	chr6_mcf_hap5	3943519	3943520	rs9272371	29868224	Sallah N	2017-11-27	Glob Health Epidemiol Genom	Whole-genome association study of antibody response to Epstein-Barr virus in an African population: a pilot.	Epstein-Barr virus immune response (multivariate analysis)	1,473 Ugandan ancestry individuals	NA	6p21.32	HLA-DQA1	rs9272371-C	0.305	6E-21		0.36	[0.27-0.44] unit decrease	Illumina [~ 17000000] (imputed)	N
615	chr6_mcf_hap5	3943519	3943520	rs9272371	29868224	Sallah N	2017-11-27	Glob Health Epidemiol Genom	Whole-genome association study of antibody response to Epstein-Barr virus in an African population: a pilot.	Epstein Barr virus nuclear antigen 1 IgG seropositivity	1,201 Ugandan ancestry cases, 361 Ugandan ancestry controls	NA	6p21.32	HLA-DQA1	rs9272371-?	0.695	4E-10		1.12	[1.08-1.16]	Illumina [~ 17000000] (imputed)	N
615	chr6_mcf_hap5	3943519	3943520	rs9272371	29868224	Sallah N	2017-11-27	Glob Health Epidemiol Genom	Whole-genome association study of antibody response to Epstein-Barr virus in an African population: a pilot.	Epstein Barr virus nuclear antigen 1 IgG levels	1,473 Ugandan ancestry individuals, 2,162 European ancestry individuals	NA	6p21.32	HLA-DQA1	rs9272371-C	0.305	3E-17	(AA)	0.36	[0.26-0.42] unit decrease	Illumina [up to 17000000] (imputed)	N
615	chr6_mcf_hap5	3944370	3944371	rs9272451	33549134	Adolphe C	2021-02-06	Genome Med	Genetic and functional interaction network analysis reveals global enrichment of regulatory T cell genes influencing basal cell carcinoma susceptibility.	Basal cell carcinoma	17,416 European ancestry cases, 375,455 European ancestry controls	NA	6p21.32	HLA-DQA1	rs9272451-G	0.386296	4E-21		0.10671105	[0.085-0.129] unit decrease	Affymetrix [7260263] (imputed)	N
615	chr6_mcf_hap5	3944377	3944378	rs2213287	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	6p21.32		rs2213287-?	NR	5E-9		0.00544481	[0.0036-0.0073] unit decrease	NR [NR]	N
615	chr6_mcf_hap5	3944753	3944754	rs2187668	28008999	Ostrowski J	2016-12-23	Sci Rep	Genetic architecture differences between pediatric and adult-onset inflammatory bowel diseases in the Polish population.	Ulcerative colitis	269 Polish ancestry child cases, 259 Polish ancestry adult cases, 582 Polish ancestry controls	121 Polish ancestry child cases, 85 Polish ancestry adult cases, 352 Polish ancestry controls	6p21.32	HLA-DQA1	rs2187668-?		4E-6	(Adults)	2.21266	[1.54-3.12]	Illumina [2612357]	N
615	chr6_mcf_hap5	3944753	3944754	rs2187668	28008999	Ostrowski J	2016-12-23	Sci Rep	Genetic architecture differences between pediatric and adult-onset inflammatory bowel diseases in the Polish population.	Inflammatory bowel disease	622 Polish ancestry child cases, 496 Polish ancestry adult cases, 582 Polish ancestry controls	192 Polish ancestry child cases, 185 Polish ancestry adult cases, 352 Polish ancestry controls	6p21.32	HLA-DQA1	rs2187668-?	NR	2E-7	(Adult)	1.9647566	[1.52-2.56]	Illumina [2612357]	N
615	chr6_mcf_hap5	3944753	3944754	rs2187668	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Diastolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	6p21.32	BAT2, BAT5	rs2187668-T	0.126	4E-11		0.372	[0.26-0.48] mm Hg decrease	Affymetrix, Illumina, Perlegen [128272]	N
615	chr6_mcf_hap5	3944753	3944754	rs2187668	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Diastolic blood pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	6p21.32	HLA-DQB1	rs2187668-T	0.1281	8E-6		0.0258	unit decrease	Illumina [242296]	N
615	chr6_mcf_hap5	3944753	3944754	rs2187668	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p21.32	HLA-DQA1	rs2187668-A	0.359	5E-36		3.4	[2.24-5.17]	Illumina [118177]	N
615	chr6_mcf_hap5	3944753	3944754	rs2187668	26525574	Westerlind H	2015-11-02	Gut	Dense genotyping of immune-related loci identifies HLA variants associated with increased risk of collagenous colitis.	Collagenous colitis	247 European ancestry cases, 3969 European ancestry controls	67 European ancestry cases, 330 European ancestry controls	6p21.32	HLA	rs2187668-?	0.126	2E-11		2.06	[1.67-2.55]	Illumina [110634]	N
615	chr6_mcf_hap5	3944753	3944754	rs2187668	26316170	Demirci FY	2015-08-28	Arthritis Rheumatol	Identification of a New Susceptibility Locus for Systemic Lupus Erythematosus on Chromosome 12 in Individuals of European Ancestry.	Systemic lupus erythematosus	661 European ancestry cases, 487 European ancestry controls	4,467 European ancestry cases, 9,114 European ancestry controls	6p21.32	HLA-DQA1	rs2187668-?	NR	1E-9				Affymetrix [up to 700598]	N
615	chr6_mcf_hap5	3944753	3944754	rs2187668	25827949	Kunz M	2015-05-04	Exp Dermatol	Genome-wide association study identifies new susceptibility loci for cutaneous lupus erythematosus.	Cutaneous lupus erythematosus	151 European ancestry cases, 1,288 European ancestry controls	219 European ancestry cases, 262 European ancestry controls	6p21.32	HLA-DQA1	rs2187668-T	0.107	4E-10		2.93	[2.18-3.95]	Affymetrix [906600]	N
615	chr6_mcf_hap5	3944753	3944754	rs2187668	24768677	de Boer YS	2014-04-23	Gastroenterology	Genome-wide association study identifies variants associated with autoimmune hepatitis type 1.	Autoimmune hepatitis type-1	649 European ancestry cases, 13,436 European ancestry controls	451 European ancestry cases, 4,103 European ancestry controls	6p21.32	HLA-DQA1	rs2187668-?	0.15	2E-78		2.9	[2.60-3.40]	Illumina [254006]	N
615	chr6_mcf_hap5	3944753	3944754	rs2187668	21408207	Chung SA	2011-03-03	PLoS Genet	Differential genetic associations for systemic lupus erythematosus based on anti-dsDNA autoantibody production.	Systemic lupus erythematosus	811 anti-dsDNA positive European ancestry cases, 906 anti-dsDNA negative European ancestry cases, 4,813 European ancestry controls	NA	6p21.32	HLA-DR3	rs2187668-A	0.12	6E-28	(anti-dsDNA +)	2.23	[1.94-2.57]	Illumina [421318] (imputed)	N
615	chr6_mcf_hap5	3944753	3944754	rs2187668	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.32	HLA-DQA1	rs2187668-A	0.1297	8E-93		4.32	[NR]	Illumina [242824]	N
615	chr6_mcf_hap5	3944753	3944754	rs2187668	20694011	Ferreira RC	2010-08-08	Nat Genet	Association of IFIH1 and other autoimmunity risk alleles with selective IgA deficiency.	Immunoglobulin A	430 European ancestry cases, 1,090 European ancestry controls	342 European ancestry cases, 886 European ancestry controls	6p21.32	HLA-DRB1	rs2187668-A	0.13	2E-33		2.53	[2.17-2.95]	Illumina [2057134] (imputed)	N
615	chr6_mcf_hap5	3944753	3944754	rs2187668	20190752	Dubois PC	2010-02-28	Nat Genet	Multiple common variants for celiac disease influencing immune gene expression.	Celiac disease	4,533 European ancestry cases, 10,750 European ancestry controls	4,918 European ancestry cases, 5,684 European ancestry controls	6p21.32	HLA-DQB1, HLA-DQA1	rs2187668-A	0.26	1E-50		6.23	[5.95-6.52]	Illumina [292387]	N
615	chr6_mcf_hap5	3944753	3944754	rs2187668	18204098	Hom G	2008-01-20	N Engl J Med	Association of systemic lupus erythematosus with C8orf13-BLK and ITGAM-ITGAX.	Systemic lupus erythematosus	1,311 European ancestry cases, 3,340 European ancestry controls	793 European ancestry cases, 857 European ancestry controls	6p21.32	HLA-DQA1	rs2187668-A	0.11	3E-21				Illumina [502033]	N
615	chr6_mcf_hap5	3944753	3944754	rs2187668	17558408	van Heel DA	2007-06-10	Nat Genet	A genome-wide association study for celiac disease identifies risk variants in the region harboring IL2 and IL21.	Celiac disease	778 European ancestry cases, 1,422 European ancestry controls	991 European ancestry cases, 1,489 European ancestry controls	6p21.32	HLA-DQA1	rs2187668-A	0.14	1E-19		7.04	[6.08-8.15]	Illumina [310605]	N
615	chr6_mcf_hap5	3945110	3945111	rs9272502	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Asthma	38,369 European ancestry cases, 411,131 European ancestry controls, 13,015 East Asian ancestry cases, 162,933 East Asian ancestry controls	NA	6p21.32		rs9272502-T	NR	2E-70		0.1424	[0.13-0.16] unit increase	Affymetrix, Illumina [25837673] (imputed)	N
615	chr6_mcf_hap5	3945179	3945180	rs9272505	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	334,944 European ancestry, NR ancestry individuals	NA	6p21.32		rs9272505-?	NR	5E-8				Affymetrix [NR] (imputed)	N
615	chr6_mcf_hap5	3945344	3945345	rs9272521	33893285	Guindo-Martinez M	2021-04-23	Nat Commun	The impact of non-additive genetic associations on age-related complex diseases.	Asthma	9,209 European ancestry cases, 47,428 European ancestry controls	NA	6p21.32		rs9272521-A	0.436944	6E-15		1.15		Affymetrix [15607971] (imputed)	N
615	chr6_mcf_hap5	3945429	3945430	rs28680981	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.32		rs28680981-G	0.738	3E-67				Affymetrix [10369434] (imputed)	N
615	chr6_mcf_hap5	3945489	3945490	rs9272532	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.32		rs9272532-C	0.77	2E-33				Affymetrix [10369434] (imputed)	N
615	chr6_mcf_hap5	3945602	3945603	rs9272535	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	6p21.32	HLA-DQA1	rs9272535-A	0.2454	6E-30		0.04727792	[0.039-0.055] unit decrease	Affymetrix [~ 2500000] (imputed)	N
615	chr6_mcf_hap5	3945602	3945603	rs9272535	21131588	Slager SL	2010-12-03	Blood	Genome-wide association study identifies a novel susceptibility locus at 6p21.3 among familial CLL.	Chronic lymphocytic leukemia	407 European ancestry cases, 296 European ancestry controls	252 European ancestry cases, 965 European ancestry controls	6p21.32	HLA-DQA1	rs9272535-A	0.27	9E-8		1.61	[1.35-1.92]	Affymetrix [827777]	N
615	chr6_mcf_hap5	3945724	3945725	rs9272544	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	6p21.32	HLA-DQA1	rs9272544-A	0.4858	8E-11		0.02325084	[0.016-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
615	chr6_mcf_hap5	3945731	3945732	rs9272545	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6p21.32	NR	rs9272545-T	0.6122	1E-8		1.0357327	[1.02-1.05]	Affymetrix [15688218] (imputed)	N
615	chr6_mcf_hap5	3945731	3945732	rs9272545	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	6p21.32	NR	rs9272545-?	NR	7E-288	(conditional)			Affymetrix [15688218] (imputed)	N
615	chr6_mcf_hap5	3945758	3945759	rs28383364	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	6p21.32	BTNL2, C6orf10, HCG23, HLA-DOB, HLA-DQA1, HLA-DQA2, HLA-DQB1, HLA-DQB2, HLA-DRA, HLA-DRB1, HLA-DRB5, HLA-DRB6, TAP2	rs28383364-A	0.802222	3E-17		1.0942891	[1.07-1.12]	Affymetrix [8274727] (imputed)	N
615	chr6_mcf_hap5	3945787	3945788	rs9272546	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	6p21.32		rs9272546-T	0.341931	9E-18		0.0373707	[0.029-0.046] unit decrease	NR [11722792] (imputed)	N
615	chr6_mcf_hap5	3945865	3945866	rs28802989	29036319	Qi H	2017-09-26	Hum Mol Genet	Discovery of susceptibility loci associated with tuberculosis in Han Chinese.	Tuberculosis	972 Chinese ancestry cases, 1,316 Gambian ancestry cases, 1,537 Chinese ancestry controls, 1,382 Gambian ancestry controls	NA	6p21.32	NR	rs28802989-?	NR	2E-6				Illumina [7333833] (imputed)	N
615	chr6_mcf_hap5	3946020	3946021	rs9272566	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic glomerulonephritis	566 European ancestry cases, 475,255 European ancestry controls, 210 East Asian ancestry cases, 174,345 East Asian ancestry controls	NA	6p21.32		rs9272566-A	NR	3E-11		0.6694	[0.47-0.87] unit increase	Affymetrix, Illumina [25844108] (imputed)	N
615	chr6_mcf_hap5	3946020	3946021	rs9272566	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.32		rs9272566-G	0.715	3E-45				Affymetrix [10369434] (imputed)	N
615	chr6_mcf_hap5	3946084	3946085	rs28383378	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.32		rs28383378-C	0.653	3E-62				Affymetrix [10369434] (imputed)	N
615	chr6_mcf_hap5	3946098	3946099	rs28383380	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.32		rs28383380-C	0.652	2E-29				Affymetrix [10369434] (imputed)	N
615	chr6_mcf_hap5	3946214	3946215	rs35248896	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs35248896-T	NR	7E-13		0.0255337	[0.019-0.033] unit increase	Affymetrix [319769] (imputed)	N
615	chr6_mcf_hap5	3946214	3946215	rs35248896	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs35248896-T	NR	2E-12		0.0251292	[0.018-0.032] unit increase	Affymetrix [319769] (imputed)	N
615	chr6_mcf_hap5	3946214	3946215	rs35248896	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs35248896-T	NR	7E-12		0.0246503	[0.018-0.032] unit increase	Affymetrix [321169] (imputed)	N
615	chr6_mcf_hap5	3960029	3960030	rs9273349	20860503	Moffatt MF	2010-09-23	N Engl J Med	A large-scale, consortium-based genomewide association study of asthma.	Asthma	10,365 cases, 16,110 controls	NA	6p21.32	HLA-DQ	rs9273349-C	0.58	7E-14		1.18	[1.13-1.24]	Illumina [582892]	N
615	chr6_mcf_hap5	3960127	3960128	rs2858856	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	HLA-DQB1	rs2858856-A	NR	4E-9		0.0185689	[0.012-0.025] unit increase	Affymetrix [321114] (imputed)	N
615	chr6_mcf_hap5	3960175	3960176	rs6905282	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (multivariate analysis)	477,968 European ancestry individuals	NA	6p21.32	HLA, DQA1, DQB1	rs6905282-A	0.466	5E-28		0.05	[0.04-0.06] unit decrease	NR [NR] (imputed)	N
615	chr6_mcf_hap5	3960175	3960176	rs6905282	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (age of onset)	117,130 European ancestry individuals	NA	6p21.32	HLA-DQA1, HLA-DQB1	rs6905282-A	0.466	1E-23		0.042	[0.034-0.05] unit decrease	NR [7647814] (imputed)	N
615	chr6_mcf_hap5	3960200	3960201	rs4713570	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Malignant lymphoma	3,546 European ancestry cases, 487,257 European ancestry controls, 335 East Asian ancestry cases, 177,342 East Asian ancestry controls	NA	6p21.32		rs4713570-T	NR	1E-16		0.2256	[0.17-0.28] unit increase	Affymetrix, Illumina [25845276] (imputed)	N
615	chr6_mcf_hap5	3960290	3960291	rs7744020	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic rhinitis	18,915 European ancestry cases, 239,773 European ancestry controls	NA	6p21.32	HLA-DQB1	rs7744020-A	0.3071	4E-25		1.131	[1.106-1.157]	Affymetrix [15688218] (imputed)	N
615	chr6_mcf_hap5	3960290	3960291	rs7744020	24204295	Han F	2013-10-31	PLoS Genet	Genome wide analysis of narcolepsy in China implicates novel immune loci and reveals changes in association prior to versus after the 2009 H1N1 influenza pandemic.	Narcolepsy (age of onset)	at least 1,000 Chinese ancestry cases	NA	6p21.32	NR	rs7744020-A	0.272	8E-9		1.9	year decrease	Affymetrix [603382]	N
615	chr6_mcf_hap5	3960365	3960366	rs6905837	32390946	Liu L	2020-04-22	Front Endocrinol (Lausanne)	Twelve New Genomic Loci Associated With Bone Mineral Density.	Total body bone mineral density (MTAG)	66,628 individuals	NA	6p21.32	NR	rs6905837-C	0.95	3E-6		0.05	[0.03-0.07] unit decrease	Affymetrix, Illumina [7369691] (imputed)	N
615	chr6_mcf_hap5	3960365	3960366	rs6905837	32390946	Liu L	2020-04-22	Front Endocrinol (Lausanne)	Twelve New Genomic Loci Associated With Bone Mineral Density.	Heel bone mineral density (MTAG)	426,824 individuals	NA	6p21.32	NR	rs6905837-C	0.95	3E-8		0.03	[0.018-0.042] unit decrease	NR [7369691] (imputed)	N
615	chr6_mcf_hap5	3960409	3960410	rs6928482	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals, at least 88,461 European ancestry individuals	NA	6p21.32	HLA-DQB1	rs6928482-T	0.542	1E-6	(EA)	0.018571429	[0.011-0.026] unit increase	Illumina [1986983] (imputed)	N
615	chr6_mcf_hap5	3960432	3960433	rs9273363	30659077	Onengut-Gumuscu S	2019-01-18	Diabetes Care	Type 1 Diabetes Risk in African-Ancestry Participants and Utility of an Ancestry-Specific Genetic Risk Score.	Type 1 diabetes	1,021 African American cases, 2,928 African American controls	NA	6p21.32	MHC	rs9273363-A	0.13	5E-138		5.48	[4.80-6.27]	Illumina [114874]	N
615	chr6_mcf_hap5	3960432	3960433	rs9273363	23770605	Berndt SI	2013-06-16	Nat Genet	Genome-wide association study identifies multiple risk loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	2,179 European ancestry cases, 6,221 European ancestry controls	1,709 European ancestry cases, 6,318 European ancestry controls	6p21.32	HLA	rs9273363-A	0.27	2E-10		1.24	[NR]	Illumina [549934]	N
615	chr6_mcf_hap5	3960462	3960463	rs9273364	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Carpal tunnel syndrome	18,855 European ancestry cases, 461,346 European ancestry controls, 192 East Asian ancestry cases, 178,534 East Asian ancestry controls	NA	6p21.32		rs9273364-G	NR	1E-8		0.0702	[0.046-0.094] unit increase	Affymetrix, Illumina [25844227] (imputed)	N
615	chr6_mcf_hap5	3960462	3960463	rs9273364	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 29,0641 European ancestry controls	NA	6p21.32	HLA-DQB1	rs9273364-G	0.302909	3E-75		0.23193699	[0.21-0.26] unit increase	Affymetrix [7288503] (imputed)	N
615	chr6_mcf_hap5	3960471	3960472	rs6906021	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Angiopoietin-1 receptor levels	21,758 European ancestry individuals	9,173 individuals	6p21.32		rs6906021-T	0.56	8E-14		0.0626	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
615	chr6_mcf_hap5	3960471	3960472	rs6906021	23817571	Bonnelykke K	2013-06-30	Nat Genet	Meta-analysis of genome-wide association studies identifies ten loci influencing allergic sensitization.	Allergic sensitization	5,789 European ancestry cases, 10,056 European ancestry controls	6,114 European ancestry cases, 9,920 European ancestry controls	6p21.32	HLA-DQB1, HLA-DQA1	rs6906021-C	0.45	2E-12		1.15	[1.11-1.2]	Affymetrix, Illumina [~ 2500000] (imputed)	N
615	chr6_mcf_hap5	3960471	3960472	rs6906021	23817569	Hinds DA	2013-06-30	Nat Genet	A genome-wide association meta-analysis of self-reported allergy identifies shared and allergy-specific susceptibility loci.	Self-reported allergy	53,862 European ancestry individuals	NA	6p21.32	HLA-DQB1, HLA-DQA1	rs6906021-C	0.4749	7E-15		0.0945	[0.071-0.118] unit increase	Illumina [2400000] (imputed)	N
615	chr6_mcf_hap5	3960508	3960509	rs28407950	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6p21.32	NR	rs28407950-C	0.7564	7E-45		1.1032656	[1.09-1.12]	Affymetrix [15688218] (imputed)	N
615	chr6_mcf_hap5	3960508	3960509	rs28407950	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic disease (asthma, hay fever or eczema)	106,772 European ancestry cases, 239,773 European ancestry controls	83,335 cases, 34,934 controls	6p21.32	NR	rs28407950-C	0.7564	7E-70		1.1201972	[1.11-1.13]	Affymetrix [15688218] (imputed)	N
615	chr6_mcf_hap5	3960508	3960509	rs28407950	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (childhood onset)	9,433 British ancestry cases, 318,237 British ancestry controls	NA	6p21.32	HLA-DQA1, HLA-DQB	rs28407950-C	0.756	1E-59		1.354	[1.306-1.405]	Affymetrix [10894596] (imputed)	N
615	chr6_mcf_hap5	3960508	3960509	rs28407950	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (adult onset)	21,564 British ancestry cases, 318,237 British ancestry controls	NA	6p21.32	HLA-DQA1, HLA-DQB	rs28407950-C	0.756	8E-31		1.148	[1.121-1.175]	Affymetrix [10894596] (imputed)	N
615	chr6_mcf_hap5	3960508	3960509	rs28407950	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (antihistamines for systemic use)	13,984 European ancestry cases, 137,652 European ancestry controls	NA	6p21.32	HLA-DQB1	rs28407950-T	0.243266	1E-10		0.094664484	[0.066-0.123] unit decrease	Affymetrix [7288503] (imputed)	N
615	chr6_mcf_hap5	3960563	3960564	rs34004019	30013184	Waage J	2018-07-16	Nat Genet	Genome-wide association and HLA fine-mapping studies identify risk loci and genetic pathways underlying allergic rhinitis.	Allergic rhinitis	59,762 European and unknown ancestry cases, 152,358 European and unknown ancestry controls	60,720 European ancestry cases, 618,527 European ancestry controls	6p21.32	HLA-DQB1, HLA-DQA1	rs34004019-A	0.7331	1E-30		1.1235955	[1.11-1.15]	Affymetrix, Illumina, Perlegen [16531985] (imputed)	N
615	chr6_mcf_hap5	3960563	3960564	rs34004019	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	6p21.32	HLA-DQA1, HLA-DQB1	rs34004019-A	0.7	4E-52		1.101	[1.09-1.11]	Affymetrix, Illumina [8307659] (imputed)	N
615	chr6_mcf_hap5	3960563	3960564	rs34004019	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Allergy	66,973 European ancestry cases, 113,768 European ancestry controls	NA	6p21.32	HLA-DQB1, HLA-DQA1	rs34004019-?	NR	3E-24		1.1086475	[1.09-1.13]	Illumina [12845910] (imputed)	N
615	chr6_mcf_hap5	3960598	3960599	rs9273367	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 1 diabetes	6,447 European ancestry cases, 451,248 European ancestry controls, 1,219 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	6p21.32		rs9273367-T	NR	6E-306		0.7272	[0.69-0.77] unit increase	Affymetrix, Illumina [25837106] (imputed)	N
615	chr6_mcf_hap5	3960611	3960612	rs28414666	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	6p21.32		rs28414666-A	0.134651377	2E-27		0.1486309	[0.12-0.18] unit increase	Illumina [13429980] (imputed)	N
615	chr6_mcf_hap5	3960635	3960636	rs9273368	34737425	Mansour Aly D	2021-11-04	Nat Genet	Genome-wide association analyses highlight etiological differences underlying newly defined subtypes of diabetes.	Severe autoimmune type 2 diabetes	452 Scandinavian ancestry cases, 2,744 Scandinavian ancestry controls	NA	6p21.32	HLA-DQA1, HLA-DQB1	rs9273368-A	0.350323	7E-40		2.678	[2.314 - 3.1]	Illumina [5396854] (imputed)	N
615	chr6_mcf_hap5	3960635	3960636	rs9273368	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	6p21.32		rs9273368-A	NR	2E-49		0.1157	[0.1-0.13] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
615	chr6_mcf_hap5	3960635	3960636	rs9273368	30254083	Cousminer DL	2018-09-25	Diabetes Care	First Genome-Wide Association Study of Latent Autoimmune Diabetes in Adults Reveals Novel Insights Linking Immune and Metabolic Diabetes.	Latent autoimmune diabetes vs. type 2 diabetes	2,779 European ancestry latent autoimmune diabetes cases, 10,396 European ancestry type 2 diabetes cases	NA	6p21.32	HLA-DQB1	rs9273368-?	0.301	3E-78		2.439	[2.222-2.676]	Affymetrix, Illumina [8328843] (imputed)	N
615	chr6_mcf_hap5	3960635	3960636	rs9273368	30254083	Cousminer DL	2018-09-25	Diabetes Care	First Genome-Wide Association Study of Latent Autoimmune Diabetes in Adults Reveals Novel Insights Linking Immune and Metabolic Diabetes.	Latent autoimmune diabetes vs. type 1 diabetes	2,454 European ancestry latent autoimmune diabetes cases, 968 European ancestry type 1 diabetes cases	NA	6p21.32	HLA-DQB1	rs9273368-G	0.35	8E-40		2.99	[2.60-3.91]	Affymetrix, Illumina [8465706] (imputed)	N
615	chr6_mcf_hap5	3960652	3960653	rs9273370	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Hypothyroidism	17,558 European ancestry cases, 117,083 European ancestry controls	NA	6p21.32	HLA-DQA1, HLA-DQB1	rs9273370-?	NR	5E-34		1.1737089	[1.14-1.20]	Illumina [13676411] (imputed)	N
615	chr6_mcf_hap5	3960734	3960735	rs28539606	33731350	Nandakumar P	2021-03-17	Sci Adv	Nuclear genome-wide associations with mitochondrial heteroplasmy.	Mitochondrial heteroplasmy measurement	982,072 European ancestry individuals	NA	6p21.32	HLA-DQB1	rs28539606-G	0.147	4E-23		0.02	[0.016-0.024] unit increase	NR [57525634] (imputed)	N
615	chr6_mcf_hap5	3960759	3960760	rs9273373	24388013	Ferreira MA	2013-12-30	J Allergy Clin Immunol	Genome-wide association analysis identifies 11 risk variants associated with the asthma with hay fever phenotype.	Asthma and hay fever	6,685 European ancestry cases, 14,091 European ancestry controls	878 European ancestry cases, 2,455 European ancestry controls	6p21.32	HLA-DQB1	rs9273373-G	0.54	4E-14		1.24	[1.17-1.30]	Illumina [up to 4972397] (imputed)	N
615	chr6_mcf_hap5	3960772	3960773	rs9273374	29785011	Zhu Z	2018-05-21	Nat Genet	A genome-wide cross-trait analysis from UK Biobank highlights the shared genetic architecture of asthma and allergic diseases.	Asthma or allergic disease (pleiotropy)	14,085 European asthma cases, 25,685 European ancestry allergic diseases cases, 76,768 European ancestry controls	NA	6p21.32	HLA-DOB, HLA-DQA1, HLA-DQA2, HLA-DQB1, HLA-DQB2, HLA-DRB1, HLA-DRB6, TAP2	rs9273374-?	NR	8E-35		1.1904762		NR [74888535] (imputed)	N
615	chr6_mcf_hap5	3960897	3960898	rs12055445	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQB1	rs12055445-A	NR	2E-8		0.0159074	[0.01-0.021] unit increase	Affymetrix [321016] (imputed)	N
615	chr6_mcf_hap5	3960897	3960898	rs12055445	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DQB1	rs12055445-G	NR	1E-12		0.0218742	[0.016-0.028] unit decrease	Affymetrix [323123] (imputed)	N
615	chr6_mcf_hap5	3960897	3960898	rs12055445	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	6p21.32	NR	rs12055445-A	0.500659	5E-18		0.0175207	[0.014-0.021] unit decrease	NR [NR]	N
615	chr6_mcf_hap5	3960897	3960898	rs12055445	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling worry	372,869 European ancestry individuals	NA	6p21.32	HLA-DRA	rs12055445-A	0.498063	3E-12		6.996	unit decrease	NR [10847151] (imputed)	N
615	chr6_mcf_hap5	3960897	3960898	rs12055445	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	6p21.32	HLA-DQA1, HLA-DQB1	rs12055445-G	0.513	6E-11		0.0247074	[0.017-0.032] unit decrease	Illumina [13519193] (imputed)	N
615	chr6_mcf_hap5	3960944	3960945	rs9273375	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DQB1	rs9273375-G	NR	9E-11		0.0262281	[0.018-0.034] unit increase	Affymetrix [323123] (imputed)	N
615	chr6_mcf_hap5	3961050	3961051	rs9273379	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Alanine aminotransferase levels in excessive alcohol consumption	951 individuals	NA	6p21.32	NR	rs9273379-?	NR	2E-6		0.0267	[0.016-0.038] unit decrease	Illumina [~ 7800000] (imputed)	N
615	chr6_mcf_hap5	3961124	3961125	rs4713572	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs4713572-C	0.411	2E-15	(Rac GTPase-activating protein 1, RACGAP1.13587.10.3)	0.21	[0.15-0.27] unit increase	Affymetrix [10572788] (imputed)	N
615	chr6_mcf_hap5	3961149	3961150	rs9273386	34103634	Valette K	2021-06-08	Commun Biol	Prioritization of candidate causal genes for asthma in susceptibility loci derived from UK Biobank.	Asthma	56,167 White-British ancestry cases, 352,255 White-British ancestry controls	NA	6p21.32	HLA-DQA1, HLA-DQB1	rs9273386-C	0.588625259859572	2E-48		0.13383532	[0.12-0.15] unit increase	Affymetrix [35186738] (imputed)	N
615	chr6_mcf_hap5	3961156	3961157	rs4713573	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Juvenile rheumatoid arthritis	216 European ancestry cases, 409,001 European ancestry controls, 110 East Asian ancestry cases, 173,268 East Asian ancestry controls	NA	6p21.32		rs4713573-C	NR	3E-9		0.5903	[0.39-0.79] unit increase	Affymetrix, Illumina [25833140] (imputed)	N
615	chr6_mcf_hap5	3961263	3961264	rs28724231	30552173	Aterido A	2018-12-14	Ann Rheum Dis	Genetic variation at the glycosaminoglycan metabolism pathway contributes to the risk of psoriatic arthritis but not psoriasis.	Psoriatic arthritis	744 Spanish ancestry cases, 1,454 Spanish ancestry controls	1,430 cases, 1,417 controls	6p21.32	NR	rs28724231-?	NR	4E-11		6.62	[NR] z-score decrease	Illumina [1387382] (imputed)	N
615	chr6_mcf_hap5	3961301	3961302	rs9273401	27189021	Cook JP	2016-05-18	Eur J Hum Genet	Multi-ethnic genome-wide association study identifies novel locus for type 2 diabetes susceptibility.	Type 2 diabetes	746 African American cases, 2,825 African American controls, 743 East Asian ancestry cases, 3,992 East Asian ancestry controls, 7,111 European ancestry cases, 49,688 European ancestry controls, 1,147 Latino cases, 5,352 Latino controls	12,171 European ancestry cases, 56,862 European ancestry controls	6p21.32	MHC	rs9273401-G	0.112	2E-9		1.16	[1.11-1.22]	NR [at least 8497425] (imputed)	N
615	chr6_mcf_hap5	3961334	3961335	rs9273404	31816047	Boutin TS	2019-12-09	Hum Mol Genet	Insights into the genetic basis of retinal detachment.	Cataracts (operation)	21,679 British ancestry cases, 387,283 British ancestry controls	NA	6p21.32	HLA-DQB1	rs9273404-?	0.469	3E-8		1.0600239	[1.04-1.08]	Affymetrix [NR] (imputed)	N
615	chr6_mcf_hap5	3961334	3961335	rs9273404	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	6p21.32	HLA-DQB1	rs9273404-G	0.47	2E-11	(conditional on rs2070600)	1.08	[NR]	Affymetrix, Illumina [6224355] (imputed)	N
615	chr6_mcf_hap5	3961424	3961425	rs9273410	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p21.32	NR	rs9273410-A	0.44	7E-16		1.15	[1.11-1.19]	Affymetrix [9886854] (imputed)	N
615	chr6_mcf_hap5	3961424	3961425	rs9273410	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p21.32	NR	rs9273410-A	0.44	3E-22			[NR]	Affymetrix [9886854] (imputed)	N
615	chr6_mcf_hap5	3961424	3961425	rs9273410	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p21.32	NR	rs9273410-A	0.44	2E-21		1.13	[1.1-1.16]	Affymetrix [9886854] (imputed)	N
615	chr6_mcf_hap5	3961424	3961425	rs9273410	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p21.32	NR	rs9273410-A	0.44	7E-22			[NR]	Affymetrix [9886854] (imputed)	N
615	chr6_mcf_hap5	3961424	3961425	rs9273410	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in non-current smokers	16,488 European ancestry cases, 169,688 European ancestry controls	NA	6p21.32	NR	rs9273410-A	0.44	3E-21		1.13	[1.1-1.16]	Affymetrix [9886854] (imputed)	N
615	chr6_mcf_hap5	3961424	3961425	rs9273410	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in never smokers	8,631 European ancestry cases, 120,544 European ancestry controls	NA	6p21.32	NR	rs9273410-A	0.44	9E-16		1.15	[1.11-1.19]	Affymetrix [9886854] (imputed)	N
615	chr6_mcf_hap5	3961424	3961425	rs9273410	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in ever smokers	12,446 European ancestry cases, 59,145 European ancestry controls	NA	6p21.32	NR	rs9273410-A	0.44	3E-9		1.1	[1.06-1.13]	Affymetrix [9886854] (imputed)	N
615	chr6_mcf_hap5	3961424	3961425	rs9273410	30552067	Shrine N	2018-12-11	Lancet Respir Med	Moderate-to-severe asthma in individuals of European ancestry: a genome-wide association study.	Asthma (moderate or severe)	5,135 European ancestry cases, 25,675 European ancestry controls	5,414 European ancestry cases, 21,471 European ancestry controls	6p21.32	HLA-DQB1	rs9273410-A	0.5529999999999999	6E-32		1.21	[1.17-1.25]	Affymetrix [33771858] (imputed)	N
615	chr6_mcf_hap5	3961630	3961631	rs9273429	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQB1	rs9273429-G	NR	6E-9		0.0188118	[0.012-0.025] unit decrease	Affymetrix [319769] (imputed)	N
615	chr6_mcf_hap5	3961654	3961655	rs1064173	32534018	Liu X	2020-06-10	Brain Behav Immun	Genetic factors underlying the bidirectional relationship between autoimmune and mental disorders - findings from a Danish population-based study.	Autoimmune traits	1,383 Danish ancestry cases, 62,656 Danish ancestry controls	NA	6p21.32	NR	rs1064173-A	0.25	3E-36		1.8	[1.64-1.96]	NR [7721839] (imputed)	N
615	chr6_mcf_hap5	3961874	3961875	rs6689	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	6p21.32		rs6689-G	NR	1E-44		0.0349	[0.03-0.04] unit increase	Affymetrix, Illumina [20536134] (imputed)	N
615	chr6_mcf_hap5	3961874	3961875	rs6689	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	135,808 East Asian ancestry individuals	NA	6p21.32		rs6689-G	0.191232	2E-10		0.0291023	[0.02-0.038] unit increase	Illumina [13476599] (imputed)	N
615	chr6_mcf_hap5	3961874	3961875	rs6689	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	6p21.32	NR	rs6689-?	NR	7E-11				Affymetrix [~ 8270000] (imputed)	N
615	chr6_mcf_hap5	3961874	3961875	rs6689	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs6689-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
615	chr6_mcf_hap5	3961888	3961889	rs1063355	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	6p21.32	HLA-DQB1	rs1063355-T	0.397563657636028	4E-19		0.0709	[0.055-0.086] unit decrease	NR [5035015] (imputed)	N
615	chr6_mcf_hap5	3961888	3961889	rs1063355	24837172	Juyal G	2014-05-16	Gut	Genome-wide association scan in north Indians reveals three novel HLA-independent risk loci for ulcerative colitis.	Ulcerative colitis	603 North Indian ancestry cases, 622 North Indian ancestry controls	733 North Indian ancestry cases, 1,148 North Indian ancestry controls	6p21.32	HLA-DQB1, HLA-DRA, HLA-DQA1	rs1063355-A	NR	2E-6		1.43	[1.23-1.66]	Illumina [480391]	N
615	chr6_mcf_hap5	3961969	3961970	rs1766	33204752	Butler-Laporte G	2020-09-24	Open Forum Infect Dis	Genetic Determinants of Antibody-Mediated Immune Responses to Infectious Diseases Agents: A Genome-Wide and HLA Association Study.	Anti-varicella zoster virus IgG seropositivity	8,735 White British ancestry individuals	NA	6p21.32	HLA-DQB1	rs1766-A	0.53	1E-11		0.04	unit decrease	NR [25472218] (imputed)	N
615	chr6_mcf_hap5	3962007	3962008	rs1770	34212547	An J	2021-07-01	Allergy Asthma Immunol Res	Genome-Wide Association Study of Korean Asthmatics: A Comparison With UK Asthmatics.	Adult asthma	1,386 Korean ancestry cases, 5,205 Korean ancestry controls	NA	6p21.32		rs1770-G	0.17	5E-10		1.41	[1.27-1.58]	Affymetrix [4922160] (imputed)	N
615	chr6_mcf_hap5	3962007	3962008	rs1770	31152121	Zhu M	2019-05-31	Diabetes Care	Identification of Novel T1D Risk Loci and Their Association With Age and Islet Function at Diagnosis in Autoantibody-Positive T1D Individuals: Based on a Two-Stage Genome-Wide Association Study.	Type 1 diabetes	1,005 Han Chinese ancestry cases, 1,257 Han Chinese ancestry controls	1,378 Han Chinese ancestry cases, 3,774 Han Chinese ancestry controls	6p21.32	HLA-DQB1	rs1770-G	0.46	2E-232		4.28	[3.92-4.68]	Illumina [787224] (imputed)	N
615	chr6_mcf_hap5	3962097	3962098	rs1063348	29903748	Debiec H	2018-06-14	J Am Soc Nephrol	Transethnic, Genome-Wide Analysis Reveals Immune-Related Risk Alleles and Phenotypic Correlates in Pediatric Steroid-Sensitive Nephrotic Syndrome.	Childhood steroid-sensitive nephrotic syndrome	56 African cases, 454 African controls	NA	6p21.32	HLA-DQB1	rs1063348-?	0.48	3E-7		3.24	[1.93-5.45]	Illumina [at least 7529344] (imputed)	N
615	chr6_mcf_hap5	3962097	3962098	rs1063348	29903748	Debiec H	2018-06-14	J Am Soc Nephrol	Transethnic, Genome-Wide Analysis Reveals Immune-Related Risk Alleles and Phenotypic Correlates in Pediatric Steroid-Sensitive Nephrotic Syndrome.	Childhood steroid-sensitive nephrotic syndrome	244 European ancestry cases, 2,552 European ancestry controls, 56 African cases, 454 African controls, 85 Maghrebian cases, 261 Maghrebian controls	NA	6p21.32	HLA-DQB1	rs1063348-G	0.60	9E-23		3.33	[2.62-4.23]	Illumina [at least 7529344] (imputed)	N
615	chr6_mcf_hap5	3962097	3962098	rs1063348	29903748	Debiec H	2018-06-14	J Am Soc Nephrol	Transethnic, Genome-Wide Analysis Reveals Immune-Related Risk Alleles and Phenotypic Correlates in Pediatric Steroid-Sensitive Nephrotic Syndrome.	Childhood steroid-sensitive nephrotic syndrome	132 European ancestry cases, 2,000 European ancestry controls	NA	6p21.32	HLA-DQB1	rs1063348-?	0.61	1E-8		2.96	[2.04-4.29]	Illumina [at least 7529344] (imputed)	N
615	chr6_mcf_hap5	3962112	3962113	rs36205178	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Scarlet fever	6,812 European ancestry cases, 113,837 European ancestry controls	NA	6p21.32	HLA-DQB1	rs36205178-C	0.81	9E-14		1.24	[1.21-1.28]	Illumina [at least 560000] (imputed)	N
615	chr6_mcf_hap5	3962258	3962259	rs2854277	29899525	Klimentidis YC	2018-06-13	Int J Obes (Lond)	Genome-wide association study of habitual physical activity in over 377,000 UK Biobank participants identifies multiple variants including CADM2 and APOE.	Moderate to vigorous physical activity levels	377,234 European ancestry individuals	NA	6p21.32	HLA-DQB1	rs2854277-C	0.92	3E-10		0.032	unit increase	Affymetrix [11800000] (imputed)	N
615	chr6_mcf_hap5	3962313	3962314	rs9273484	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Agathobacter sp000434275 abundance in stool	5,959 Finnish ancestry individuals	NA	6p21.32		rs9273484-A	0.26703	4E-9		0.114715	[0.077-0.153] unit decrease	Illumina [7980478] (imputed)	N
615	chr6_mcf_hap5	3962323	3962324	rs9273487	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.32		rs9273487-A	0.824	4E-20				Affymetrix [10369434] (imputed)	N
615	chr6_mcf_hap5	3962517	3962518	rs9273500	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DQB1, HLA-DQB1-AS1, XXbac-BPG254F23.6	rs9273500-T	NR	2E-9		0.0229852	[0.015-0.031] unit increase	Affymetrix [323123] (imputed)	N
615	chr6_mcf_hap5	3962536	3962537	rs9273501	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs9273501-A	NR	9E-16		1.1098778	[1.08-1.14]	Affymetrix [7846216] (imputed)	N
615	chr6_mcf_hap5	3962603	3962604	rs2854275	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma and major depressive disorder	46,802 European ancestry asthma cases, 59,851 European ancestry major depressive disorder cases, 460,635 European ancestry controls	NA	6p21.32	HLA-DOB, HLA-DQA1, HLA-DQA2, HLA-DQB1, HLA-DQB2, TAP2	rs2854275-?	NR	3E-13				Affymetrix [up to 13554551] (imputed)	N
615	chr6_mcf_hap5	3962603	3962604	rs2854275	23326239	Rubicz R	2013-01-10	PLoS Genet	A genome-wide integrative genomic study localizes genetic factors influencing antibodies against Epstein-Barr virus nuclear antigen 1 (EBNA-1).	Epstein-Barr virus immune response (EBNA-1)	1,367 Mexican American indivduals	589 Mexican American indivduals	6p21.32	PSORS1C1, BAT2, EHMT2, HLA-DQB1, C6orf15, BAT4, NOTCH4, PRRT1, HLA-B	rs2854275-T	0.064	2E-10	(Conditional on rs477515 - Quantitative)	0.45	[NR] unit decrease	Illumina [944565]	N
615	chr6_mcf_hap5	3962713	3962715	rs201043192	26423011	Wain LV	2015-09-27	Lancet Respir Med	Novel insights into the genetics of smoking behaviour, lung function, and chronic obstructive pulmonary disease (UK BiLEVE): a genetic association study in UK Biobank.	Lung function (low FEV1 vs high FEV1)	19,493 European ancestry individuals with low FEV1 measurements, 9,808 European ancestry individuals with high FEV1 measurements	NA	6p21.32	HLA-DQB1	rs201043192-A	NR	5E-9		0.114	[0.077-0.151] unit increase	Affymetrix [28509962] (imputed)	N
615	chr6_mcf_hap5	3962836	3962837	rs28688207	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Sarcoidosis	1,718 European ancestry cases, 484,955 European ancestry controls, 220 East Asian ancestry cases, 177,667 East Asian ancestry controls	NA	6p21.32		rs28688207-C	NR	1E-15		0.7435	[0.56-0.93] unit increase	Affymetrix, Illumina [25845061] (imputed)	N
615	chr6_mcf_hap5	3962992	3962993	rs9273542	31263063	Dufek S	2019-07-01	J Am Soc Nephrol	Genetic Identification of Two Novel Loci Associated with Steroid-Sensitive Nephrotic Syndrome.	Childhood steroid-sensitive nephrotic syndrome	422 European ancestry cases, 5,642 European ancestry controls	NA	6p21.32	HLA-DQB1	rs9273542-T	0.24	2E-43		3.39	[2.86-4.03]	Illumina [5216266] (imputed)	N
615	chr6_mcf_hap5	3963087	3963088	rs3828785	27560520	Shaffer JR	2016-08-25	PLoS Genet	Genome-Wide Association Study Reveals Multiple Loci Influencing Normal Human Facial Morphology.	Eye morphology	2,447 European ancestry individuals	671 European ancestry individuals	6p21.32	Intergenic	rs3828785-A	0.03169	2E-7	(Outercanthal width)	1.449	[0.91-1.99] unit decrease	Illumina [34985077] (imputed)	N
615	chr6_mcf_hap5	3963095	3963096	rs28724235	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.32		rs28724235-T	0.934	1E-16				Affymetrix [10369434] (imputed)	N
615	chr6_mcf_hap5	3963096	3963097	rs9273552	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs9273552-A	0.07	2E-31	(Ubiquitin carboxyl-terminal hydrolase 25, USP25.9215.117.3)	0.62	[0.52-0.72] unit increase	Affymetrix [10572788] (imputed)	N
615	chr6_mcf_hap5	3963263	3963264	rs28724238	32488134	Auckland K	2020-06-02	Sci Rep	The Human Leukocyte Antigen Locus and Rheumatic Heart Disease Susceptibility in South Asians and Europeans.	Rheumatic heart disease	510 Northern Indian cases, 344 Northern Indian controls, 162 Fijian Indian cases, 147 Fijian Indian controls	150 European ancestry cases, 1,309 European ancestry controls	6p21.32	HLA-DQB1	rs28724238-?		2E-7		1.75	[1.42-2.15]	Illumina [6925553] (imputed)	N
615	chr6_mcf_hap5	3963529	3963530	rs28724242	32589924	Bi W	2020-06-23	Am J Hum Genet	A Fast and Accurate Method for Genome-Wide Time-to-Event Data Analysis and Its Application to UK Biobank.	Essential hypertension (time to event)	76,566 British ancestry cases, 206,305 British ancestry controls	NA	6p21.32	HLA-DQB142	rs28724242-?	NR	4E-8				NR [~ 24000000] (imputed)	N
615	chr6_mcf_hap5	3964064	3964065	rs1049130	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQB1, XXbac-BPG254F23.6	rs1049130-A	NR	1E-11		0.0190514	[0.014-0.025] unit increase	Affymetrix [321016] (imputed)	N
615	chr6_mcf_hap5	3964094	3964095	rs1049087	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hypothyroidism	1,114 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	6p21.32		rs1049087-A	0.609286629	4E-8		0.24121252	[0.16-0.33] unit increase	Illumina [13429045] (imputed)	N
615	chr6_mcf_hap5	3964094	3964095	rs1049087	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Lymphocytic leukemia	852 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs1049087-A	NR	7E-7		1.2743725	NR	Affymetrix [7846216] (imputed)	N
615	chr6_mcf_hap5	3964364	3964365	rs9274096	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.32		rs9274096-A	0.604	1E-14				Affymetrix [10369434] (imputed)	N
615	chr6_mcf_hap5	3965154	3965155	rs191548708	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Sarcoidosis	220 East Asian ancestry cases, 177,667 East Asian ancestry controls	NA	6p21.32		rs191548708-C	0.185964776	4E-9		0.78615963	[0.53-1.05] unit increase	Illumina [13429855] (imputed)	N
615	chr6_mcf_hap5	3965300	3965301	rs9274220	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p21.32		rs9274220-G	0.832	6E-16				Affymetrix [10369434] (imputed)	N
615	chr6_mcf_hap5	3965491	3965492	rs9274235	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	6p21.32	HLA-DQB1	rs9274235-T	0.3487	4E-9		0.02287324	[0.015-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
615	chr6_mcf_hap5	3965579	3965580	rs9274247	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	6p21.32	HLA-DQB1	rs9274247-A	0.3212	3E-35		0.0372	[0.031-0.043] unit decrease	Affymetrix [19819130] (imputed)	N
615	chr6_mcf_hap5	3965579	3965580	rs9274247	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	6p21.32	HLA-DQB1	rs9274247-A	0.3212	1E-56		0.0469	[0.041-0.053] unit decrease	Affymetrix [19819130] (imputed)	N
615	chr6_mcf_hap5	3965579	3965580	rs9274247	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	6p21.32	HLA-DQB1	rs9274247-A	0.3212	7E-28		0.0316	[0.026-0.037] unit decrease	Affymetrix [19819130] (imputed)	N
615	chr6_mcf_hap5	3965667	3965675	rs142471762	28334935	Raffield LM	2017-05-15	Hum Mol Genet	Genome-wide association study of iron traits and relation to diabetes in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL): potential genomic intersection of iron and glucose regulation?	Iron status biomarkers (iron levels)	12,580 Hispanic/Latino individuals	NA	6p21.32	HLA-DQB1	rs142471762-AATATTAGG	NR	4E-7		0.29	[0.18-0.4] unit decrease	Illumina [27700000] (imputed)	N
615	chr6_mcf_hap5	3966246	3966247	rs9274299	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.32	HLA-DQA1, HLA-DQA2, HLA-DQB1, HLA-DQB2, MIR3135B	rs9274299-?		4E-13		1.1111112	[1.08-1.14]	Affymetrix, Illumina [NR]	N
615	chr6_mcf_hap5	3966499	3966500	rs71542462	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	6p21.32		rs71542462-G	0.738074	2E-9		0.0306313	[0.021-0.041] unit decrease	NR [11722792] (imputed)	N
615	chr6_mcf_hap5	3966651	3966652	rs9274346	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	6p21.32	HLA-DQB1	rs9274346-C	0.607966	3E-14		0.0152666	[0.011-0.019] unit decrease	Affymetrix [NR] (imputed)	N
615	chr6_mcf_hap5	3966670	3966671	rs67842782	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p21.32		rs67842782-C	0.852	5E-9				Affymetrix [10369434] (imputed)	N
615	chr6_mcf_hap5	3966732	3966733	rs41263822	33893285	Guindo-Martinez M	2021-04-23	Nat Commun	The impact of non-additive genetic associations on age-related complex diseases.	Cancer	17,131 European ancestry cases, 39,506 European ancestry controls	NA	6p21.32		rs41263822-A	0.420574	2E-10		1.1		Affymetrix [15611556] (imputed)	N
615	chr6_mcf_hap5	3966768	3966769	rs9274361	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DQB1	rs9274361-A	NR	7E-10		0.020516	[0.014-0.027] unit decrease	Affymetrix [321169] (imputed)	N
615	chr6_mcf_hap5	3966872	3966873	rs1130397	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	6p21.32		rs1130397-A	0.81619	7E-22		0.0518638	[0.041-0.062] unit decrease	NR [11722792] (imputed)	N
615	chr6_mcf_hap5	3966872	3966873	rs1130397	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.32		rs1130397-A	0.816	8E-23				Affymetrix [10369434] (imputed)	N
615	chr6_mcf_hap5	3966883	3966884	rs17412833	26838040	Kristjansson RP	2016-02-03	Nat Commun	Common and rare variants associating with serum levels of creatine kinase and lactate dehydrogenase.	Lactate dehydrogenase levels	98,585 Icelandic ancestry individuals	NA	6p21.32		rs17412833-T	0.1376	2E-22		0.07	unit increase	Illumina [28300000] (imputed)	N
615	chr6_mcf_hap5	3966920	3966921	rs9274384	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs9274384-A	0.727	5E-31	(conditional)	1.415	[1.36-1.47]	Illumina [11270530] (imputed)	N
615	chr6_mcf_hap5	3966944	3966945	rs9274390	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	6p21.32	HLA-DQB1	rs9274390-C	0.855414	1E-18		0.030104	[0.023-0.037] unit increase	Affymetrix [NR] (imputed)	N
615	chr6_mcf_hap5	3966944	3966945	rs9274390	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.32	HLA-DQB1	rs9274390-T		2E-14		1.13	[1.09-1.16]	Affymetrix, Illumina [NR]	N
615	chr6_mcf_hap5	3966974	3966975	rs41552812	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	6p21.32	HLA-DQB1	rs41552812-C	0.92962	3E-29		0.0565596	[0.047-0.066] unit increase	Affymetrix [NR] (imputed)	N
615	chr6_mcf_hap5	3967068	3967069	rs1140310	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pollinosis	18,593 East Asian ancestry cases, 153,666 East Asian ancestry controls	NA	6p21.32		rs1140310-C	0.301582347	8E-13		0.09507005	[0.069-0.121] unit decrease	Illumina [13429010] (imputed)	N
615	chr6_mcf_hap5	3967117	3967118	rs9274407	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQB1	rs9274407-A	NR	3E-9		0.0226345	[0.015-0.03] unit decrease	Affymetrix [319769] (imputed)	N
615	chr6_mcf_hap5	3967117	3967118	rs9274407	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DQB1	rs9274407-A	NR	5E-9		0.0222139	[0.015-0.03] unit decrease	Affymetrix [319769] (imputed)	N
615	chr6_mcf_hap5	3967117	3967118	rs9274407	21570397	Lucena MI	2011-04-12	Gastroenterology	Susceptibility to amoxicillin-clavulanate-induced liver injury is influenced by multiple HLA class I and II alleles.	Drug-induced liver injury (amoxicillin-clavulanate)	201 European ancestry cases, 532 European ancestry controls	NA	6p21.32	HLA-DRB1-DQB1	rs9274407-?	NR	5E-14		3.1	[2.30-4.20]	Illumina [822927]	N
615	chr6_mcf_hap5	3967179	3967180	rs201184533	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	6p21.32	HLA-DQB1	rs201184533-C	NR	9E-17		1.263	[1.21-1.32]	Affymetrix [9000000] (imputed)	N
615	chr6_mcf_hap5	3967185	3967186	rs281862010	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6p21.32		rs281862010-C	0.902103	9E-10		0.048298	[0.033-0.064] unit decrease	NR [11722792] (imputed)	N
615	chr6_mcf_hap5	3967185	3967186	rs281862010	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs281862010-G	0.103	4E-21	(HLA class II histocompatibility antigen, DQ alpha 2 chain, HLA.DQA2.7757.5.3)	0.44	[0.34-0.54] unit increase	Affymetrix [10572788] (imputed)	N
615	chr6_mcf_hap5	3967290	3967291	rs41263828	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.32	NR	rs41263828-?	NR	1E-10				Affymetrix [~ 8270000] (imputed)	N
615	chr6_mcf_hap5	3967360	3967361	rs28746806	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DQB1	rs28746806-C	NR	1E-14		0.0253727	[0.019-0.032] unit decrease	Affymetrix [323123] (imputed)	N
615	chr6_mcf_hap5	3967530	3967531	rs9274442	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	6p21.32		rs9274442-C	NR	8E-142		0.0773	[0.071-0.083] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
615	chr6_mcf_hap5	3967546	3967547	rs28746814	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	6p21.32	HLA-DQB1	rs28746814-T	0.325337	9E-16		0.022020848	[0.017-0.027] unit increase	Affymetrix [93095623] (imputed)	N
615	chr6_mcf_hap5	3967731	3967732	rs9274461	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.32		rs9274461-T	0.575	1E-14				Affymetrix [10369434] (imputed)	N
615	chr6_mcf_hap5	3968020	3968021	rs9274477	24204295	Han F	2013-10-31	PLoS Genet	Genome wide analysis of narcolepsy in China implicates novel immune loci and reveals changes in association prior to versus after the 2009 H1N1 influenza pandemic.	Narcolepsy (age of onset)	at least 1,000 Chinese ancestry cases	NA	6p21.32	NR	rs9274477-G	0.292	2E-8		1.82	year decrease	Affymetrix [603382]	N
615	chr6_mcf_hap5	3968143	3968144	rs41264352	34011352	Schwarm C	2021-05-19	Orphanet J Rare Dis	Identification of two novel bullous pemphigoid- associated alleles, HLA-DQA1*05:05 and -DRB1*07:01, in Germans.	Bullous pemphigoid	438 German cases, 417 German controls	NA	6p21.32	HLA-DQB1	rs41264352-?	NR	4E-10		0.798564	[0.55-1.05] unit increase	Affymetrix [up to 386296] (imputed)	N
615	chr6_mcf_hap5	3968528	3968529	rs68033958	32141793	Garman L	2020-03-06	Ocul Immunol Inflamm	Genome-Wide Association Study of Ocular Sarcoidosis Confirms HLA Associations and Implicates Barrier Function and Autoimmunity in African Americans.	Ocular sarcoidosis	260 African American cases, 1,551 African American controls	NA	6p21.32	NR	rs68033958-A	NR	1E-6		1.685	[1.36-2.08]	Illumina [13976150] (imputed)	N
615	chr6_mcf_hap5	3968675	3968676	rs9274522	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 62)	3,566 European ancestry individuals	4,680 European ancestry individuals	6p21.32		rs9274522-T	0.322654941	2E-8				Illumina [7417619] (imputed)	N
615	chr6_mcf_hap5	3968689	3968690	rs1049055	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TGM3	5,368 Icelandic ancestry individuals	NA	6p21.32		rs1049055-C	0.3996	4E-56		0.302704	[0.27-0.34] unit increase	Illumina [7506463] (imputed)	N
615	chr6_mcf_hap5	3968689	3968690	rs1049055	32276964	Shete S	2020-04-10	Cancer Res	A genome-wide association study identifies two novel susceptible regions for squamous cell carcinoma of the head and neck.	Oral cavity cancer	631 European ancestry cases, 4,493 European ancestry controls	2,568 European ancestry cases, 3,232 European ancestry controls	6p21.32	HLA-DQB1	rs1049055-T	0.78	3E-9		1.2820514	[1.18-1.39]	Illumina [7858089] (imputed)	N
615	chr6_mcf_hap5	3968769	3968770	rs3891175	28779025	Alberts R	2017-08-04	Gut	Genetic association analysis identifies variants associated with disease progression in primary sclerosing cholangitis.	Autoimmune hepatitis in primary sclerosing cholangitis	107 European ancestry cases, 3,159 European ancestry controls	NA	6p21.32	HLA-DQB1	rs3891175-?	NR	5E-11		2.41		Illumina [130422] (imputed)	N
615	chr6_mcf_hap5	3968975	3968976	rs3891173	33893285	Guindo-Martinez M	2021-04-23	Nat Commun	The impact of non-additive genetic associations on age-related complex diseases.	Type 2 diabetes	6,967 European ancestry cases, 49,670 European ancestry controls	NA	6p21.32		rs3891173-T	0.2870184	5E-8		1.14		Affymetrix [15533686] (imputed)	N
615	chr6_mcf_hap5	3968978	3968979	rs71542467	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	6p21.32		rs71542467-G	0.8462	8E-13		0.0407075	[0.03-0.052] unit decrease	NR [11722792] (imputed)	N
615	chr6_mcf_hap5	3968978	3968979	rs71542467	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs71542467-G	0.846206	3E-16		0.0452701	[0.034-0.056] unit decrease	NR [11722792] (imputed)	N
615	chr6_mcf_hap5	3969063	3969064	rs41316204	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs41316204-?	NR	2E-12				Affymetrix [~ 8270000] (imputed)	N
615	chr6_mcf_hap5	3969304	3969305	rs4993140	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQB1	rs4993140-C	NR	5E-9		0.0217004	[0.014-0.029] unit increase	Affymetrix [319769] (imputed)	N
615	chr6_mcf_hap5	3969304	3969305	rs4993140	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DQB1	rs4993140-C	NR	6E-9		0.0215826	[0.014-0.029] unit increase	Affymetrix [319769] (imputed)	N
615	chr6_mcf_hap5	3969304	3969305	rs4993140	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DQB1	rs4993140-C	NR	7E-10		0.0231343	[0.016-0.03] unit increase	Affymetrix [321169] (imputed)	N
615	chr6_mcf_hap5	3969899	3969900	rs9274600	26423011	Wain LV	2015-09-27	Lancet Respir Med	Novel insights into the genetics of smoking behaviour, lung function, and chronic obstructive pulmonary disease (UK BiLEVE): a genetic association study in UK Biobank.	Lung function in never smokers (low FEV1 vs high FEV1)	9,745 European ancestry individuals with low FEV1 measurements, 4,902 European ancestry individuals with high FEV1 measurements	NA	6p21.32	HLA-DQB1, HLA-DQA2	rs9274600-G	0.472	1E-10		1.18	[1.13-1.25]	Affymetrix [28509962] (imputed)	N
615	chr6_mcf_hap5	3970209	3970210	rs3828794	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6p21.32	NR	rs3828794-G	0.5206	1E-9		1.0380982	[1.03-1.05]	Affymetrix [15688218] (imputed)	N
615	chr6_mcf_hap5	3970255	3970256	rs2647025	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	6p21.32	NR	rs2647025-?	NR	4E-99	(conditional)			Affymetrix [15688218] (imputed)	N
615	chr6_mcf_hap5	3970304	3970305	rs9274623	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	6p21.32	NR	rs9274623-G	NR	6E-19		1.1363636	[NR]	Illumina [7158791] (imputed)	N
615	chr6_mcf_hap5	3970369	3970370	rs3828800	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DQB1	rs3828800-A	NR	1E-8		0.0236155	[0.016-0.032] unit decrease	Affymetrix [323123] (imputed)	N
615	chr6_mcf_hap5	3970426	3970427	rs3828805	34642315	Ferreiro-Iglesias A	2021-10-12	Nat Commun	Germline determinants of humoral immune response to HPV-16 protect against oropharyngeal cancer.	Oropharynx cancer and human papilloma virus 16 negative oropharyngeal cancer	2,359 European ancestry cases, 565 European ancestry controls	NA	6p21.32		rs3828805-C	NR	3E-9		1.2999		Illumina [up to 7574753] (imputed)	N
615	chr6_mcf_hap5	3970426	3970427	rs3828805	27749845	Lesseur C	2016-10-17	Nat Genet	Genome-wide association analyses identify new susceptibility loci for oral cavity and pharyngeal cancer.	Oropharynx cancer	2,506 European ancestry cases, 135 cases, 5,984 European ancestry controls, 601 controls	NA	6p21.32	HLA-DQB1	rs3828805-C	0.720208999141883	2E-12		1.3699		Illumina [7574753] (imputed)	N
615	chr6_mcf_hap5	3970426	3970427	rs3828805	27749845	Lesseur C	2016-10-17	Nat Genet	Genome-wide association analyses identify new susceptibility loci for oral cavity and pharyngeal cancer.	Oral cavity and pharyngeal cancer	2,717 European ancestry oral cavity cancer cases, 273 oral cavity cancer cases, 2,506 European ancestry oropharynx cancer cases, 135 oropharynx cancer cases, 305 European and unknown ancestry hypopharynx cancer cases, 73 European and unknown ancestry overlapping cases, 25 European and unknown ancestry cases, 5,984 European ancestry controls, 601 controls	NA	6p21.32	HLA-DQB1	rs3828805-C	0.72	3E-13		1.2759		Illumina [7574753] (imputed)	N
615	chr6_mcf_hap5	3970670	3970671	rs9274657	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.32	HLA-DQA1, HLA-DQB1, HLA-DRB1, HLA-DRB6	rs9274657-A		1E-8		1.07	[1.04-1.09]	Affymetrix, Illumina [NR]	N
615	chr6_mcf_hap5	3970682	3970683	rs2856698	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	6p21.32		rs2856698-G	NR	1E-158		0.2523	[0.23-0.27] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
615	chr6_mcf_hap5	3970682	3970683	rs2856698	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	6p21.32	HLA-DQB1	rs2856698-G	0.328285	3E-170		0.2688451	[0.25-0.29] unit increase	Affymetrix [7288503] (imputed)	N
615	chr6_mcf_hap5	3970691	3970692	rs9274659	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (age of onset)	37,846 British ancestry individuals	NA	6p21.32	NR	rs9274659-A	0.67	7E-18		1.249	[0.96-1.53] unit decrease	Affymetrix [10894596] (imputed)	N
615	chr6_mcf_hap5	3970801	3970802	rs9461792	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DQB1	rs9461792-A	NR	2E-14		0.0240826	[0.018-0.03] unit increase	Affymetrix [321169] (imputed)	N
615	chr6_mcf_hap5	3970824	3970825	rs9461793	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	6p21.32	NR	rs9461793-A	0.721618	2E-16		0.0108832	[0.0081-0.0136] unit increase	Affymetrix [16585854] (imputed)	N
615	chr6_mcf_hap5	3970824	3970825	rs9461793	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	6p21.32	NR	rs9461793-A	0.721618	3E-9		0.0092307	[0.0061-0.0124] unit increase	Affymetrix [16585866] (imputed)	N
615	chr6_mcf_hap5	3970946	3970947	rs17205409	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.32		rs17205409-T	0.71	8E-19				Affymetrix [10369434] (imputed)	N
615	chr6_mcf_hap5	3970952	3970953	rs9274678	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	6p21.32	HLA-DQB1	rs9274678-G	0.153747	3E-39		0.0256517	[0.02-0.031] unit increase	Affymetrix [93095623] (imputed)	N
615	chr6_mcf_hap5	3971005	3971006	rs28371206	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQB1	rs28371206-A	NR	4E-13		0.022406	[0.016-0.028] unit increase	Affymetrix [319769] (imputed)	N
615	chr6_mcf_hap5	3971005	3971006	rs28371206	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DQB1	rs28371206-A	NR	3E-13		0.0226484	[0.017-0.029] unit increase	Affymetrix [319769] (imputed)	N
615	chr6_mcf_hap5	3971037	3971038	rs184950714	32581322	Kakuta Y	2020-06-24	Sci Rep	An Integrated Genomic and Transcriptomic Analysis Reveals Candidates of Susceptibility Genes for Crohn's Disease in Japanese Populations.	Crohn's disease	713 Japanese ancestry cases, 2,063 Japanese ancestry controls	NA	6p21.32	HLA	rs184950714-?	NR	1E-17		1.16	[1.12-1.19]	NR [7424691] (imputed)	N
615	chr6_mcf_hap5	3971037	3971038	rs184950714	30500874	Kakuta Y	2018-11-29	J Crohns Colitis	A genome-wide association study identifying RAP1A as a novel susceptibility gene for Crohn's disease in Japanese individuals.	Crohn's disease	713 Japanese ancestry cases, 2,083 Japanese ancestry controls	770 Japanese ancestry cases, 852 Japanese ancestry controls	6p21.32	HLA-DQB1	rs184950714-?	0.156	4E-19		2.05	NR	NR [4335144] (imputed)	N
615	chr6_mcf_hap5	3971306	3971307	rs9274695	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQB1	rs9274695-T	NR	5E-9		0.0173565	[0.012-0.023] unit increase	Affymetrix [319769] (imputed)	N
615	chr6_mcf_hap5	3971306	3971307	rs9274695	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DQB1	rs9274695-T	NR	3E-8		0.0165442	[0.011-0.022] unit increase	Affymetrix [319769] (imputed)	N
615	chr6_mcf_hap5	3971306	3971307	rs9274695	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DQB1	rs9274695-T	NR	1E-11		0.021862	[0.016-0.028] unit decrease	Affymetrix [323123] (imputed)	N
615	chr6_mcf_hap5	3971467	3971468	rs17205528	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p21.32	NR	rs17205528-?	NR	3E-12		0.1232	[0.088-0.158] unit increase	Illumina [at least 560000] (imputed)	N
615	chr6_mcf_hap5	3971522	3971523	rs9274704	31719529	Lyons PA	2019-11-12	Nat Commun	Genome-wide association study of eosinophilic granulomatosis with polyangiitis reveals genomic loci stratified by ANCA status.	Eosinophilic granulomatosis with polyangiitis	534 European ancestry cases, 6,688 European ancestry controls	142 European and unknown ancestry cases, 121 European and unknown ancestry controls	6p21.32	HLA-DQ	rs9274704-?	NR	1E-20		0.7	NR unit increase	Affymetrix [9246221] (imputed)	N
615	chr6_mcf_hap5	3971718	3971719	rs17205640	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	150,708 East Asian ancestry individuals	NA	6p21.32	NR	rs17205640-T	0.456457	2E-22		0.047325	[0.038-0.057] SD units increase	Affymetrix, Illumina [16709798] (imputed)	N
615	chr6_mcf_hap5	3971718	3971719	rs17205640	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	149,861 East Asian ancestry individuals	NA	6p21.32	NR	rs17205640-T	0.456482	8E-17		0.040531	[0.031-0.05] SD units increase	Affymetrix, Illumina [16709126] (imputed)	N
615	chr6_mcf_hap5	3971718	3971719	rs17205640	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	142,940 East Asian ancestry individuals	NA	6p21.32	NR	rs17205640-T	0.455611	1E-14		0.038007	[0.028-0.048] SD units increase	Affymetrix, Illumina [16289021] (imputed)	N
615	chr6_mcf_hap5	3971775	3971776	rs9274719	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	81,042 East Asian ancestry individuals	NA	6p21.32	NR	rs9274719-T	0.330615	3E-10		0.040123	[0.028-0.053] SD units increase	Affymetrix, Illumina [16286709] (imputed)	N
615	chr6_mcf_hap5	3971777	3971778	rs17212014	31719529	Lyons PA	2019-11-12	Nat Commun	Genome-wide association study of eosinophilic granulomatosis with polyangiitis reveals genomic loci stratified by ANCA status.	Eosinophilic granulomatosis with polyangiitis (MPO-ANCA positive)	159 European ancestry cases, 6,688 European ancestry controls	43 European and unknown ancestry cases, 121 European and unknown ancestry controls	6p21.32	HLA-DQ	rs17212014-?	NR	1E-41		2.0	NR unit increase	Affymetrix [9246221] (imputed)	N
615	chr6_mcf_hap5	3971802	3971803	rs3997832	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQB1	rs3997832-C	NR	3E-15		0.022848	[0.017-0.029] unit increase	Affymetrix [319769] (imputed)	N
615	chr6_mcf_hap5	3971802	3971803	rs3997832	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DQB1	rs3997832-C	NR	5E-15		0.0226927	[0.017-0.028] unit increase	Affymetrix [319769] (imputed)	N
615	chr6_mcf_hap5	3971878	3971879	rs9274725	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DQB1	rs9274725-T	NR	8E-18		0.0244981	[0.019-0.03] unit increase	Affymetrix [321169] (imputed)	N
615	chr6_mcf_hap5	3972048	3972049	rs1694129	33768542	Liu Y	2021-03-26	Clin Pharmacol Ther	Class II HLA Variants Associate with Risk of Pegaspargase Hypersensitivity.	Asparaginase hypersensitivity in acute lymphoblastic leukemia	2,168 European ancestry individuals	NA	6p21.32	HLA-DQB1	rs1694129-T	NR	1E-8		2.03	[NR]	Illumina [NR] (imputed)	N
615	chr6_mcf_hap5	3972480	3972481	rs28746882	33143745	Andlauer TFM	2020-11-04	BMC Med	Treatment- and population-specific genetic risk factors for anti-drug antibodies against interferon-beta: a GWAS.	Binding antibody response to interferon beta therapy in multiple sclerosis (antibody levels; all treatment preparations)	up to 2,000 German and Swedish ancestry individuals	up to 757 German and Swedish ancestry individuals	6p21.32		rs28746882-A	0.08	5E-11	(conditional on rs9272071)	0.27678168	[0.19-0.36] unit increase	Illumina [8550834] (imputed)	N
615	chr6_mcf_hap5	3972504	3972505	rs11751495	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in IDL	115,082 European ancestry individuals	NA	6p21.32		rs11751495-C	0.972783	2E-10		0.082651	[0.057-0.108] unit decrease	NR [11722792] (imputed)	N
615	chr6_mcf_hap5	3972504	3972505	rs11751495	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	6p21.32	HLA-DQB1	rs11751495-G	0.027062	6E-16		0.05776946	[0.044-0.072] unit decrease	Affymetrix [93095623] (imputed)	N
615	chr6_mcf_hap5	3974707	3974708	rs9274845	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium HDL	115,082 European ancestry individuals	NA	6p21.32		rs9274845-C	0.579977	1E-11		0.0273653	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
615	chr6_mcf_hap5	3974707	3974708	rs9274845	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium HDL	115,082 European ancestry individuals	NA	6p21.32		rs9274845-C	0.579977	6E-13		0.0292315	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
615	chr6_mcf_hap5	3974707	3974708	rs9274845	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in HDL	115,082 European ancestry individuals	NA	6p21.32		rs9274845-C	0.579977	6E-9		0.0228022	[0.015-0.03] unit decrease	NR [11722792] (imputed)	N
615	chr6_mcf_hap5	3974707	3974708	rs9274845	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	6p21.32		rs9274845-C	0.579977	1E-8		0.022675	[0.015-0.03] unit decrease	NR [11722792] (imputed)	N
615	chr6_mcf_hap5	3974707	3974708	rs9274845	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein A1 levels	115,082 European ancestry individuals	NA	6p21.32		rs9274845-C	0.579977	1E-8		0.0226077	[0.015-0.03] unit decrease	NR [11722792] (imputed)	N
615	chr6_mcf_hap5	3974715	3974716	rs9274846	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium HDL particles	115,082 European ancestry individuals	NA	6p21.32		rs9274846-C	0.579991	3E-10		0.0251988	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
615	chr6_mcf_hap5	3974715	3974716	rs9274846	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium HDL	115,082 European ancestry individuals	NA	6p21.32		rs9274846-C	0.579991	9E-9		0.0230622	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
615	chr6_mcf_hap5	3974715	3974716	rs9274846	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	6p21.32		rs9274846-C	0.579991	7E-9		0.023128	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
615	chr6_mcf_hap5	3975722	3975723	rs9274890	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs9274890-A	0.257	2E-12	(Complement C4, C4A.C4B.4481.34.2)	0.22	[0.16-0.28] unit increase	Affymetrix [10572788] (imputed)	N
615	chr6_mcf_hap5	3975795	3975796	rs9274903	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs9274903-A	0.266	4E-14	(Complement C4, C4A.C4B.4481.34.2)	0.22	[0.16-0.28] unit increase	Affymetrix [10572788] (imputed)	N
615	chr6_mcf_hap5	3976445	3976446	rs9274954	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	HLA-DQB1	rs9274954-T	0.366	5E-13	(PAX-interacting protein 1, PAXIP1.12894.3.3)	0.22	[0.16-0.28] unit increase	Affymetrix [10572788] (imputed)	N
615	chr6_mcf_hap5	3977050	3977051	rs1794484	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lung cancer	4,444 East Asian ancestry cases, 174,282 East Asian ancestry controls	NA	6p21.32		rs1794484-C	0.340651021	5E-10		0.1469222	[0.1-0.19] unit increase	Illumina [13429980] (imputed)	N
615	chr6_mcf_hap5	3977326	3977327	rs1694123	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	HLA-DQB1	rs1694123-G	0.157	8E-13	(Zinc fingers and homeoboxes protein 3, ZHX3.10036.201.3)	0.27	[0.19-0.35] unit increase	Affymetrix [10572788] (imputed)	N
615	chr6_mcf_hap5	3977821	3977822	rs9275052	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.32	NR	rs9275052-G	NR	1E-10		0.028	unit decrease	Affymetrix [at least 7091467] (imputed)	N
615	chr6_mcf_hap5	3977821	3977822	rs9275052	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.32	NR	rs9275052-G	0.404	5E-9	(EA)	0.027	unit decrease	Affymetrix [at least 7091467] (imputed)	N
615	chr6_mcf_hap5	3977821	3977822	rs9275052	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.32	NR	rs9275052-G	NR	2E-6		0.021	unit decrease	Affymetrix [at least 7091467] (imputed)	N
615	chr6_mcf_hap5	3978613	3978614	rs545072519	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	HLA-DQB1	rs545072519-C	NR	2E-9		0.0333434	[0.022-0.044] unit increase	Affymetrix [321114] (imputed)	N
615	chr6_mcf_hap5	3979328	3979329	rs1694112	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	6p21.32	NR	rs1694112-?	NR	8E-41	(conditional)			Affymetrix [15688218] (imputed)	N
615	chr6_mcf_hap5	3979340	3979341	rs9275109	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	HLA-DQB1	rs9275109-G	NR	2E-9		0.0176049	[0.012-0.023] unit decrease	Affymetrix [321114] (imputed)	N
615	chr6_mcf_hap5	3980280	3980281	rs9275134	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Cancer	56,634 White British ancestry cases, 218,196 White British ancestry controls	NA	6p21.32		rs9275134-?	NR	6E-6		0.964671	[0.95-0.98]	NR [688737]	N
615	chr6_mcf_hap5	3980429	3980430	rs17205731	33143745	Andlauer TFM	2020-11-04	BMC Med	Treatment- and population-specific genetic risk factors for anti-drug antibodies against interferon-beta: a GWAS.	Binding antibody response to interferon beta therapy in multiple sclerosis (antibody levels; IFN?-1b subcutaneous)	up to 2,000 German and Swedish ancestry individuals	up to 757 German and Swedish ancestry individuals	6p21.32		rs17205731-T	0.05	2E-11	(conditional on HLA-DRB1*04:01)	0.62026006	[0.44-0.8] unit increase	Illumina [8550834] (imputed)	N
615	chr6_mcf_hap5	3980747	3980748	rs17212146	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	6p21.32		rs17212146-A	0.01175	2E-14		0.08258159	[0.061-0.104] unit increase	Affymetrix [93095623] (imputed)	N
615	chr6_mcf_hap5	3980747	3980748	rs17212146	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6p21.32		rs17212146-A	0.01175	3E-25		0.11182327	[0.091-0.133] unit increase	Affymetrix [93095623] (imputed)	N
615	chr6_mcf_hap5	3981211	3981212	rs17212223	24204295	Han F	2013-10-31	PLoS Genet	Genome wide analysis of narcolepsy in China implicates novel immune loci and reveals changes in association prior to versus after the 2009 H1N1 influenza pandemic.	Narcolepsy (age of onset)	at least 1,000 Chinese ancestry cases	NA	6p21.32	NR	rs17212223-T	0.191	3E-8		1.95	year decrease	Affymetrix [603382]	N
615	chr6_mcf_hap5	3981871	3981872	rs9275152	31660654	Bandres-Ciga S	2019-10-29	Mov Disord	The Genetic Architecture of Parkinson Disease in Spain: Characterizing Population-Specific Risk, Differential Haplotype Structures, and Providing Etiologic Insight.	Parkinson's disease	4,639 Spanish ancestry cases, 2,949 Spanish ancestry controls	NA	6p21.32	HLA-DQB1	rs9275152-C	0.08263	2E-8		0.376551	[0.25-0.51] unit decrease	Illumina [9911207] (imputed)	N
615	chr6_mcf_hap5	3981949	3981950	rs3104361	33204752	Butler-Laporte G	2020-09-24	Open Forum Infect Dis	Genetic Determinants of Antibody-Mediated Immune Responses to Infectious Diseases Agents: A Genome-Wide and HLA Association Study.	Helicobacter pylori OMP antibody levels	2,640 White British ancestry individuals	NA	6p21.32	HLA-DQB1	rs3104361-T	0.418	7E-10		0.18	[0.12-0.24] unit decrease	NR [25472218] (imputed)	N
615	chr6_mcf_hap5	3981995	3981996	rs7755224	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	6p21.32	NR	rs7755224-?	NR	5E-138	(conditional)			Affymetrix [15688218] (imputed)	N
615	chr6_mcf_hap5	3982037	3982038	rs3021058	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Automobile speeding propensity	404,291 European ancestry individuals	NA	6p21.32	HLA-DQB1	rs3021058-A	0.5386	4E-8		0.012403218	[0.008-0.0168] unit increase	Affymetrix [11514463] (imputed)	N
615	chr6_mcf_hap5	3982150	3982151	rs3021176	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hepatic cancer	379 European ancestry cases, 475,259 European ancestry controls, 2,122 East Asian ancestry cases, 159,201 East Asian ancestry controls	NA	6p21.32		rs3021176-A	NR	2E-9		0.2342	[0.16-0.31] unit increase	Affymetrix, Illumina [25843189] (imputed)	N
615	chr6_mcf_hap5	3982303	3982304	rs9275160	34431594	Atkins JL	2021-08-25	Aging Cell	A genome-wide association study of the frailty index highlights brain pathways in ageing.	Frailty index	175,226 European ancestry individuals	NA	6p21.32	HLA-DQB1, HLA-DQA2	rs9275160-A	0.3397	7E-28		0.0382	[0.031-0.045] unit increase	Affymetrix, Illumina [7666890] (imputed)	N
615	chr6_mcf_hap5	3982303	3982304	rs9275160	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	6p21.32	NR	rs9275160-A	NR	9E-8		1.044	[1.03-1.06]	Affymetrix, Illumina [29235255] (imputed)	N
615	chr6_mcf_hap5	3982469	3982470	rs28746950	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs28746950-A	0.172	4E-13	(Ubiquitin carboxyl-terminal hydrolase 25, USP25.9215.117.3)	0.27	[0.19-0.35] unit increase	Affymetrix [10572788] (imputed)	N
615	chr6_mcf_hap5	3982631	3982632	rs115712830	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28- CD4-CD8- T cell Absolute Count	3,408 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs115712830-C	0.15817	5E-8		0.2914	[0.19-0.4] unit decrease	Illumina [18340221] (imputed)	N
615	chr6_mcf_hap5	3983645	3983646	rs9275171	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	2,495 East Asian ancestry cases, 4,283 East Asian ancestry controls	NA	6p21.32		rs9275171-G	NR	5E-29		0.446594	[0.37-0.52] unit increase	NR [5275424] (imputed)	N
615	chr6_mcf_hap5	3983853	3983854	rs9275177	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	IgA nephropathy	1,180 East Asian ancestry cases, 899 East Asian ancestry controls	NA			rs9275177-T	NR	2E-6		0.362916	[0.21-0.51] unit increase	Illumina [NR] (imputed)	N
615	chr6_mcf_hap5	3984396	3984397	rs9275184	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	6p21.32	NR	rs9275184-C	0.1106	6E-24		0.0981	[0.079-0.117] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
615	chr6_mcf_hap5	3984504	3984505	rs2856687	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	6p21.32	NR	rs2856687-C	0.588689	2E-12		0.0486468	[0.035-0.062] unit decrease	Affymetrix [17914406] (imputed)	N
615	chr6_mcf_hap5	3984659	3984660	rs28747027	32573827	Huang YH	2020-06-23	Aliment Pharmacol Ther	Large-scale genome-wide association study identifies HLA class II variants associated with chronic HBV infection: a study from Taiwan Biobank.	Chronic hepatitis B infection	1,810 East Asian cases, 9,002 East Asian seropositive controls	648 East Asian cases, 3,190 East Asian seropositive controls	6p21.32	NR	rs28747027-G	0.4639	7E-21		1.41	[1.32-1.52]	Affymetrix [583383]	N
615	chr6_mcf_hap5	3985230	3985231	rs13194877	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs13194877-A	0.2	6E-9		4.48	[3.41-5.89]	Illumina [NR] (imputed)	N
615	chr6_mcf_hap5	3985412	3985413	rs3129783	33143745	Andlauer TFM	2020-11-04	BMC Med	Treatment- and population-specific genetic risk factors for anti-drug antibodies against interferon-beta: a GWAS.	Binding antibody response to interferon beta therapy in multiple sclerosis (antibody levels; IFN?-1a subcutaneous and intramuscular)	up to 2,000 German and Swedish ancestry individuals	up to 757 German and Swedish ancestry individuals	6p21.32		rs3129783-G	0.44	4E-19		0.3	[-0.24--0.36] unit decrease	Illumina [8550834] (imputed)	N
615	chr6_mcf_hap5	3993828	3993829	rs3129716	26316170	Demirci FY	2015-08-28	Arthritis Rheumatol	Identification of a New Susceptibility Locus for Systemic Lupus Erythematosus on Chromosome 12 in Individuals of European Ancestry.	Systemic lupus erythematosus	661 European ancestry cases, 487 European ancestry controls	4,467 European ancestry cases, 9,114 European ancestry controls	6p21.32	HLA-DQB1	rs3129716-?	NR	4E-9				Affymetrix [up to 700598]	N
615	chr6_mcf_hap5	3993936	3993937	rs4642516	30012571	Jia X	2018-07-16	J Am Soc Nephrol	Strong Association of the HLA-DR/DQ Locus with Childhood Steroid-Sensitive Nephrotic Syndrome in the Japanese Population.	Childhood steroid-sensitive nephrotic syndrome	224 Japanese ancestry cases, 412 Japanese ancestry controls	216 Japanese ancestry cases, 719 Japanese ancestry controls	6p21.32	HLA-DR, HLA-DQ	rs4642516-T	0.73	7E-13		3.030303	[2.44-3.85]	Affymetrix [4105543] (imputed)	N
615	chr6_mcf_hap5	3993971	3993972	rs7774434	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	8,021 European ancestry cases, 16,489 European ancestry controls, 2,495 East Asian ancestry cases, 4,283 East Asian ancestry controls	NA	6p21.32		rs7774434-C	NR	3E-116		0.462101	[0.42-0.5] unit increase	NR [2787054] (imputed)	N
615	chr6_mcf_hap5	3993971	3993972	rs7774434	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	8,021 European ancestry cases, 16,489 European ancestry controls	NA	6p21.32		rs7774434-C	NR	4E-104		0.470454	[0.43-0.51] unit increase	NR [5054572] (imputed)	N
615	chr6_mcf_hap5	3993971	3993972	rs7774434	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	MTCO3P1	rs7774434-C	NR	6E-9		0.0168538	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
615	chr6_mcf_hap5	3993971	3993972	rs7774434	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	MTCO3P1	rs7774434-C	NR	2E-8		0.0162768	[0.011-0.022] unit increase	Affymetrix [319769] (imputed)	N
615	chr6_mcf_hap5	3993971	3993972	rs7774434	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	MTCO3P1	rs7774434-C	NR	2E-10		0.0201596	[0.014-0.026] unit decrease	Affymetrix [323123] (imputed)	N
615	chr6_mcf_hap5	3993971	3993972	rs7774434	26394269	Cordell HJ	2015-09-22	Nat Commun	International genome-wide meta-analysis identifies new primary biliary cirrhosis risk loci and targetable pathogenic pathways.	Primary biliary cholangitis	2,764 European ancestry cases, 10,475 European ancestry controls	3,716 European ancestry cases,  4,261 European ancestry controls	6p21.32	MHC	rs7774434-C	0.47	2E-56		1.68	NR	Illumina [1143634] (imputed)	N
615	chr6_mcf_hap5	3993971	3993972	rs7774434	22961000	Liu JZ	2012-10-01	Nat Genet	Dense fine-mapping study identifies new susceptibility loci for primary biliary cirrhosis.	Primary biliary cirrhosis	2,861 British and Irish ancestry cases, 8,514 British and Irish ancestry controls	NA	6p21.32	HLA	rs7774434-C	0.38	1E-48		1.57		Illumina [237619] (imputed)	N
615	chr6_mcf_hap5	3993971	3993972	rs7774434	21399635	Mells GF	2011-03-13	Nat Genet	Genome-wide association study identifies 12 new susceptibility loci for primary biliary cirrhosis.	Primary biliary cholangitis	1,840 European ancestry cases, 5,163 European ancestry controls and (Liu et al)	620 European ancestry cases, 2,514 European ancestry controls	6p21.32	MHC	rs7774434-C	0.38	4E-34		1.6	[1.48-1.73]	Illumina [507467]	N
615	chr6_mcf_hap5	3993971	3993972	rs7774434	20639880	Liu X	2010-07-18	Nat Genet	Genome-wide meta-analyses identify three loci associated with primary biliary cirrhosis.	Primary biliary cholangitis	453 European ancestry cases, 945 European ancestry controls,	481 European ancestry cases, 3,706 European ancestry controls	6p21.32	HLA-DQB1	rs7774434-C	0.371	3E-26		1.75	[NR]	Illumina [276459]	N
615	chr6_mcf_hap5	3994213	3994214	rs9275210	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	MTCO3P1	rs9275210-T	NR	9E-9		0.0164099	[0.011-0.022] unit increase	Affymetrix [321114] (imputed)	N
615	chr6_mcf_hap5	3994310	3994311	rs7775055	23603761	Hinks A	2013-04-21	Nat Genet	Dense genotyping of immune-related disease regions identifies 14 new susceptibility loci for juvenile idiopathic arthritis.	Juvenile idiopathic arthritis (oligoarticular or rheumatoid factor-negative polyarticular)	2,816 European ancestry cases, 13,056 European ancestry controls	NA	6p21.32	HLA-DQA2, HLA-DQB1	rs7775055-G	0.02	3E-174	(dominant model)	6.01	[5.30-6.81]	Illumina [123003]	N
615	chr6_mcf_hap5	3994310	3994311	rs7775055	22936693	Juran BD	2012-08-29	Hum Mol Genet	Immunochip analyses identify a novel risk locus for primary biliary cirrhosis at 13q14, multiple independent associations at four established risk loci and epistasis between 1p31 and 7q32 risk variants.	Primary biliary cirrhosis	2,216 European ancestry cases, 5,594 Europen ancestry controls	NA	6p21.32	NR	rs7775055-C		1E-33		3.71	[3.00-4.59]	Illumina [109812]	N
615	chr6_mcf_hap5	3994473	3994474	rs7775228	33106546	Johnson TA	2020-10-26	J Hum Genet	Association of an IGHV3-66 gene variant with Kawasaki disease.	Kawasaki disease	1,276 East Asian ancestry cases, 5,086 East Asian ancestry controls	2,152 East Asian ancestry cases, 2,751 East Asian ancestry controls	6p21.32	HLA-DQB1	rs7775228-C	NR	7E-13		1.26	[1.19-1.35]	Affymetrix, Illumina [6265045] (imputed)	N
615	chr6_mcf_hap5	3994473	3994474	rs7775228	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.32	NR	rs7775228-?	NR	3E-6	(EA, C-C motif chemokine 19)			Affymetrix [509946]	N
615	chr6_mcf_hap5	3994473	3994474	rs7775228	25147954	Enroth S	2014-08-22	Nat Commun	Strong effects of genetic and lifestyle factors on biomarker variation and use of personalized cutoffs.	CCL19 levels	up to 653 individuals	up to 317 individuals	6p21.32	HLA-DQB1	rs7775228-C	0.16731	3E-13		0.51	[0.37-0.65] unit increase	Illumina [4840842] (imputed)	N
615	chr6_mcf_hap5	3994473	3994474	rs7775228	22036096	Ramasamy A	2011-11-01	J Allergy Clin Immunol	A genome-wide meta-analysis of genetic variants associated with allergic rhinitis and grass sensitization and their interaction with birth order.	IgE grass sensitization	2,315 European ancestry cases, 10,032 European ancestry controls	NA	6p21.32	HLA region	rs7775228-C	0.13	2E-9		1.33	[1.21-1.45]	Affymetrix, Illumina [2217510] (imputed)	N
615	chr6_mcf_hap5	3994473	3994474	rs7775228	21804548	Hirota T	2011-07-31	Nat Genet	Genome-wide association study identifies three new susceptibility loci for adult asthma in the Japanese population.	Asthma	1,532 Japanese ancestry cases, 3,304 Japanese ancestry controls	5,639 Japanese ancestry cases, 24,608 Japanese ancestry controls	6p21.32	HLA-DQB1	rs7775228-A	0.63	5E-15		1.17	[1.12-1.21]	Illumina [458847]	N
615	chr6_mcf_hap5	3994704	3994705	rs9469220	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	MTCO3P1	rs9469220-A	NR	5E-16		0.0228026	[0.017-0.028] unit increase	Affymetrix [319769] (imputed)	N
615	chr6_mcf_hap5	3994704	3994705	rs9469220	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	MTCO3P1	rs9469220-A	NR	9E-16		0.0226045	[0.017-0.028] unit increase	Affymetrix [319769] (imputed)	N
615	chr6_mcf_hap5	3994704	3994705	rs9469220	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	MTCO3P1	rs9469220-A	NR	5E-18		0.0246439	[0.019-0.03] unit increase	Affymetrix [321169] (imputed)	N
615	chr6_mcf_hap5	3994704	3994705	rs9469220	30230522	Zhang S	2018-09-19	Br J Dermatol	Subtype-Specific Inherited Predisposition to Pemphigus in Chinese Population.	Pemphigus vulgaris	255 Chinese ancestry cases, 501 Chinese ancestry controls	110 Chinese ancestry cases, 604 Chinese ancestry controls	6p21.32	NR	rs9469220-G	0.33	4E-19		3.36	NR	Affymetrix [416397]	N
615	chr6_mcf_hap5	3994704	3994705	rs9469220	30230522	Zhang S	2018-09-19	Br J Dermatol	Subtype-Specific Inherited Predisposition to Pemphigus in Chinese Population.	Pemphigus	350 Chinese ancestry cases, 501 Chinese ancestry controls	146 Chinese ancestry cases, 604 Chinese ancestry controls	6p21.32	NR	rs9469220-G	0.33	7E-22		3.2	NR	Affymetrix [416397]	N
615	chr6_mcf_hap5	3994704	3994705	rs9469220	23146381	Levin AM	2012-11-10	J Allergy Clin Immunol	A meta-analysis of genome-wide association studies for serum total IgE in diverse study populations.	IgE levels	2,469 African American individuals, 259 Latino individuals, 1,564 European ancestry individuals	2,961 African American individuals, 1,477 Latino individuals, 649 European ancestry individuals, 680 Hutterite individuals	6p21.32	HLA-DQB1	rs9469220-G	NR	2E-7		0.09	[0.05-0.12] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
615	chr6_mcf_hap5	3994704	3994705	rs9469220	17554300	Wellcome Trust Case Control Consortium	2007-06-07	Nature	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Crohn's disease	1,748 European ancestry cases, 2,938 European ancestry controls	(see Parkes 2007)	6p21.32	NR	rs9469220-A	0.48	2E-6		1.14	[0.98-1.32]	Affymetrix [469557]	N
615	chr6_mcf_hap5	3995083	3995084	rs34723256	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs34723256-A	0.059	4E-68	(conditional)	2.282	[2.19-2.37]	Illumina [11270530] (imputed)	N
615	chr6_mcf_hap5	3995103	3995104	rs2858330	31985003	Boocock J	2020-01-27	Hum Mol Genet	Genomic dissection of 43 serum urate-associated loci provides multiple insights into molecular mechanisms of urate control.	Urate levels	110,238 European ancestry individuals, 21,471 East Asian individuals	NA	6p21.32	HLA-DQB1	rs2858330-T		4E-8		0.027	[0.017-0.037] mg/dl increase	NR [NR] (imputed)	N
615	chr6_mcf_hap5	3995321	3995322	rs9275218	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	MTCO3P1	rs9275218-G	NR	1E-11		0.0205042	[0.015-0.026] unit increase	Affymetrix [321169] (imputed)	N
615	chr6_mcf_hap5	3995828	3995829	rs140068907	26891255	Jung ES	2016-02-18	Inflamm Bowel Dis	HLA-C*01 is a Risk Factor for Crohn's Disease.	Crohn's disease	275 Korean ancestry cases, 2,369 Korean ancestry controls	242 Korean ancestry cases, 1,066 Korean ancestry controls	6p21.32	HLA-DQB1, HLA-DQA2	rs140068907-C	0.08	1E-11		1.98	[1.62-2.41]	Affymetrix [3387207] (imputed)	N
615	chr6_mcf_hap5	3995901	3995902	rs9275222	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	MTCO3P1	rs9275222-T	NR	7E-11		0.0204278	[0.014-0.027] unit increase	Affymetrix [323858] (imputed)	N
615	chr6_mcf_hap5	3995901	3995902	rs9275222	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	MTCO3P1	rs9275222-T	NR	1E-9		0.0190432	[0.013-0.025] unit increase	Affymetrix [127266] (imputed)	N
615	chr6_mcf_hap5	3996030	3996031	rs2856674	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	MTCO3P1	rs2856674-G	NR	7E-14		0.0297899	[0.022-0.038] unit decrease	Affymetrix [321169] (imputed)	N
615	chr6_mcf_hap5	3996030	3996031	rs2856674	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling nervous	373,121 European ancestry individuals	NA	6p21.32	BRD2	rs2856674-A	0.144331	2E-10		6.41	z score increase	NR [10847151] (imputed)	N
615	chr6_mcf_hap5	3996030	3996031	rs2856674	23603763	Liu JZ	2013-06-01	Nat Genet	Dense genotyping of immune-related disease regions identifies nine new risk loci for primary sclerosing cholangitis.	Primary sclerosing cholangitis	3,789 European ancestry cases, 25,079 European ancestry controls	NA	6p21.32	HLA-DQA	rs2856674-?	NR	1E-6	(conditioned on rs4143332 + HLA-DQA*01:03 + rs532098 +rs1794282 + rs9263964)			Illumina [140322] (imputed)	N
615	chr6_mcf_hap5	3996215	3996216	rs3129718	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Hepatitis B	1,425 European ancestry cases, 218,180 European ancestry controls	NA	6p21.32	NR	rs3129718-?	NR	6E-6		0.3099	[0.17-0.45] unit decrease	Illumina [at least 560000] (imputed)	N
615	chr6_mcf_hap5	3996255	3996256	rs9275224	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	MTCO3P1	rs9275224-G	NR	1E-13		0.0208122	[0.015-0.026] unit increase	Affymetrix [319769] (imputed)	N
615	chr6_mcf_hap5	3996255	3996256	rs9275224	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	MTCO3P1	rs9275224-G	NR	1E-12		0.0199507	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
615	chr6_mcf_hap5	3996255	3996256	rs9275224	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	MTCO3P1	rs9275224-G	NR	5E-16		0.023055	[0.017-0.029] unit increase	Affymetrix [321169] (imputed)	N
615	chr6_mcf_hap5	3996255	3996256	rs9275224	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	6p21.32	HLA-DQB1, HLA-DQA1, HLA-DRB1	rs9275224-G	0.59	8E-14	(East Asian)	1.38		Illumina [> 1000000] (imputed)	N
615	chr6_mcf_hap5	3996255	3996256	rs9275224	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	6p21.32	HLA-DQB1, HLA-DQA1, HLA-DRB1	rs9275224-G	0.51	6E-30		1.36	[NR]	Illumina [> 1000000] (imputed)	N
615	chr6_mcf_hap5	3996255	3996256	rs9275224	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	6p21.32	HLA-DQB1, HLA-DQA1, HLA-DRB1	rs9275224-G	0.51	6E-18	(EA)	1.38	[NR]	Illumina [> 1000000] (imputed)	N
615	chr6_mcf_hap5	3996274	3996275	rs35472814	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs35472814-C	0.2	1E-8		4.23	[3.24-5.52]	Illumina [NR] (imputed)	N
615	chr6_mcf_hap5	3996959	3996960	rs2647006	30593799	Vergara C	2018-12-26	Gastroenterology	Multi-Ancestry Genome-Wide Association Study of Spontaneous Clearance of Hepatitis C Virus.	Hepatitis C (spontaneous viral clearance)	701 European ancestry cases, 1,035 European ancestry controls, 445 African American cases, 1,756 African American controls, 173 Hispanic ancestry cases, 313 Hispanic ancestry controls	NA	6p21.32	HLA-DQB1, HLA-DQA2	rs2647006-C	0.62	1E-21		1.79	NR (AA)	Illumina [15704341] (imputed)	N
615	chr6_mcf_hap5	3997094	3997095	rs9275239	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	MTCO3P1	rs9275239-A	NR	2E-20		0.0286392	[0.023-0.035] unit decrease	Affymetrix [323123] (imputed)	N
615	chr6_mcf_hap5	3997118	3997119	rs9275241	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs9275241-?	NR	2E-13				Affymetrix [~ 8270000] (imputed)	N
615	chr6_mcf_hap5	3997324	3997325	rs9275245	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (mother's age at death or mother's attained age)	up to 699,000 individuals	NA	6p21.32	NR	rs9275245-A		3E-6				Illumina [458525]	N
615	chr6_mcf_hap5	3997679	3997680	rs2858320	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	MTCO3P1	rs2858320-A	NR	9E-24		0.0285816	[0.023-0.034] unit decrease	Affymetrix [319769] (imputed)	N
615	chr6_mcf_hap5	3997679	3997680	rs2858320	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	MTCO3P1	rs2858320-A	NR	8E-23		0.0279496	[0.022-0.034] unit decrease	Affymetrix [319769] (imputed)	N
615	chr6_mcf_hap5	3997679	3997680	rs2858320	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	MTCO3P1	rs2858320-A	NR	9E-27		0.0308142	[0.025-0.036] unit decrease	Affymetrix [321169] (imputed)	N
615	chr6_mcf_hap5	3997679	3997680	rs2858320	33119750	Vergara C	2020-10-29	J Infect Dis	A multi-ancestry sex stratified genome-wide association study of spontaneous clearance of hepatitis C virus.	Hepatitis C (spontaneous viral clearance)	239 African ancestry male cases, 1,184 African ancestry male controls, 206 African ancestry female cases, 572 African ancestry female controls, 489 European ancestry male cases, 703 European ancestry male controls, 212 European ancestry female cases, 332 European ancestry female controls, 91 Hispanic male cases, 197 Hispanic male controls, 82 Hispanic female cases, 116 Hispanic female controls	NA	6p21.32	NR	rs2858320-G	0.58	2E-12	(female)	1.96	[NR]	Illumina [5730693] (imputed)	N
615	chr6_mcf_hap5	3997961	3997962	rs9275260	28698626	Lopez-Mejias R	2017-07-11	Sci Rep	A genome-wide association study suggests the HLA Class II region as the major susceptibility locus for IgA vasculitis.	Immunoglobulin A vasculitis	285 European ancestry cases, 1,006 European ancestry controls	NA	6p21.32	HLA-DQA1, HLA-DQB1	rs9275260-?		3E-9		1.7857143	[1.47-2.17]	Illumina [1909910] (imputed)	N
615	chr6_mcf_hap5	3999413	3999414	rs9275263	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic hepatitis C infection	273 European ancestry cases, 351,740 European ancestry controls, 7,110 East Asian ancestry cases, 169,588 East Asian ancestry controls	NA	6p21.32		rs9275263-G	NR	2E-12		0.1228	[0.088-0.157] unit decrease	Affymetrix, Illumina [20457788] (imputed)	N
615	chr6_mcf_hap5	3999494	3999495	rs9275267	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic hepatitis C infection	7,110 East Asian ancestry cases, 169,588 East Asian ancestry controls	NA	6p21.32		rs9275267-G	0.623579949	3E-12		0.1242382	[0.089-0.159] unit decrease	Illumina [13429570] (imputed)	N
615	chr6_mcf_hap5	3999602	3999603	rs9275271	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR++ monocyte Absolute Count	3,579 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9275271-C	0.62317	2E-14		0.2356	[0.18-0.3] unit increase	Illumina [18377365] (imputed)	N
615	chr6_mcf_hap5	3999615	3999616	rs9275272	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Prostate cancer	10,792 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs9275272-C	NR	2E-7		1.0948106	NR	Affymetrix [7846216] (imputed)	N
615	chr6_mcf_hap5	3999997	3999998	rs9275281	28373541	Yang J	2017-04-03	Proc Natl Acad Sci U S A	Genetic signatures of high-altitude adaptation in Tibetans.	High altitude adaptation	3,008 Tibetan (founder/genetic isolate) individuals and 7,287 East Asian individuals	NA	6p21.32	HLA-DQB1	rs9275281-G	0.365	1E-10				Illumina [7300000] (imputed)	N
615	chr6_mcf_hap5	3999998	3999999	rs114169440	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs114169440-A	0.2	2E-8		4.08	[3.13-5.31]	Illumina [NR] (imputed)	N
615	chr6_mcf_hap5	4000051	4000052	rs9275282	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs9275282-?	NR	1E-14				Affymetrix [~ 8270000] (imputed)	N
615	chr6_mcf_hap5	4000235	4000236	rs113523948	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs113523948-C	0.063	3E-21	(conditional)	0.578	[0.46-0.69]	Illumina [11270530] (imputed)	N
615	chr6_mcf_hap5	4000336	4000337	rs112927854	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Low density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	6p21.32	HLA-DQB1, HLA-DQA2	rs112927854-?		4E-9		0.0728	[0.049-0.097] unit decrease	Illumina [31500000] (imputed)	N
615	chr6_mcf_hap5	4000366	4000367	rs9275292	27286809	Ligthart S	2016-06-10	BMC Genomics	Bivariate genome-wide association study identifies novel pleiotropic loci for lipids and inflammation.	C-reactive protein levels or LDL-cholesterol levels (pleiotropy)	65,000 individuals (C-reactive protein), 95,454 individuals (LDL-cholesterol)	NA	6p21.32	HLA-DQB1	rs9275292-A	NR	3E-8				NR [2501749] (imputed)	N
615	chr6_mcf_hap5	4000474	4000475	rs13205804	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	6p21.32	intergenic	rs13205804-A	0.8815	3E-21		0.0391	[0.031-0.047] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
615	chr6_mcf_hap5	4000708	4000709	rs3129720	23472185	Mero IL	2013-03-05	PLoS One	Oligoclonal band status in Scandinavian multiple sclerosis patients is associated with specific genetic risk alleles.	Multiple sclerosis (OCB status)	1,367 European ancestry OCB positive cases, 161 European ancestry OCB negative cases, 428 European ancestry controls	NA	6p21.32	HLA-DQB1	rs3129720-?	NR	5E-15	(OCB positive vs. controls)	1.91	[1.62-2.24]	Illumina [495970]	N
615	chr6_mcf_hap5	4000708	4000709	rs3129720	22493691	Eriksson N	2012-04-06	PLoS One	Novel associations for hypothyroidism include known autoimmune risk loci.	Hypothyroidism	3,736 European ancestry cases, 35,546 European ancestry controls	NA	6p21.32	HLA-DQA2, HLA-DQB1, HLA-DRB9, HLA-DRB5, HLA-DRB1, HLA-DQA1	rs3129720-C	0.764	5E-7		1.16	(1.10-1.23)	Illumina [870065]	N
615	chr6_mcf_hap5	4000841	4000842	rs17427445	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs17427445-A	0.2	1E-8		4.23	[3.24-5.52]	Illumina [NR] (imputed)	N
615	chr6_mcf_hap5	4000929	4000930	rs6457617	31050781	Zhao SX	2019-05-03	JAMA Netw Open	Assessment of Molecular Subtypes in Thyrotoxic Periodic Paralysis and Graves Disease Among Chinese Han Adults: A Population-Based Genome-Wide Association Study.	Thyrotoxic hypokalemic periodic paralysis and Graves disease	171 Han Chinese ancestry cases, 2,160 Han Chinese ancestry controls	362 Han Chinese ancestry cases, 1,089 Han Chinese ancestry controls	6p21.32	HLA-DQB1, HLA-DQA2	rs6457617-?	0.47	2E-17		1.74	[1.53-1.97]	Illumina [2752055] (imputed)	N
615	chr6_mcf_hap5	4000929	4000930	rs6457617	25616667	Goris A	2015-01-22	Brain	Genetic variants are major determinants of CSF antibody levels in multiple sclerosis.	Immunoglobulin G index levels in multiple sclerosis	773 European ancestry Individuals, 165 Individuals	2,072 Individuals	6p21.32	HLA-DQA1	rs6457617-A	NR	7E-17		0.127	[NR] unit decrease	NR [485236]	N
615	chr6_mcf_hap5	4000929	4000930	rs6457617	21841780	Chu X	2011-08-14	Nat Genet	A genome-wide association study identifies two new risk loci for Graves' disease.	Graves' disease	1,468 Chinese ancestry cases, 1,490 Chinese ancestry controls	3,994 Chinese ancestry cases, 3,510 Chinese ancestry controls	6p21.32	HLA, DRB1, DQA1, DQB1	rs6457617-T	0.45	7E-33		1.4	[1.32-1.48]	Illumina [486049]	N
615	chr6_mcf_hap5	4000929	4000930	rs6457617	21750679	Allanore Y	2011-07-07	PLoS Genet	Genome-wide scan identifies TNIP1, PSORS1C1, and RHOB as novel risk loci for systemic sclerosis.	Systemic sclerosis	564 European ancestry cases, 1,776 European ancestry controls	1,682 European ancestry cases, 3,926 European ancestry controls	6p21.32	HLA, DQB1	rs6457617-T	0.50	2E-37		1.61	[1.49-1.72]	Illumina [489814]	N
615	chr6_mcf_hap5	4000929	4000930	rs6457617	20383147	Radstake TR	2010-04-11	Nat Genet	Genome-wide association study of systemic sclerosis identifies CD247 as a new susceptibility locus.	Systemic sclerosis	2,296 European ancestry cases, 5,171 European ancestry controls	2,753 European ancestry cases, 4,569 European ancestry controls	6p21.32	HLA-DQB1	rs6457617-?	0.53	4E-17		1.37	[1.28-1.47]	Illumina [279621]	N
615	chr6_mcf_hap5	4000929	4000930	rs6457617	18668548	Julia A	2008-08-01	Arthritis Rheum	Genome-wide association study of rheumatoid arthritis in the Spanish population: KLF12 as a risk locus for rheumatoid arthritis susceptibility.	Rheumatoid arthritis	400 European ancestry cases, 400 European ancestry controls	410 European ancestry cases, 394 European ancestry controls	6p21.32	HLA-DQA2, HLA-DQA1	rs6457617-?	NR	1E-9				Illumina [299918]	N
615	chr6_mcf_hap5	4000929	4000930	rs6457617	17554300	Wellcome Trust Case Control Consortium	2007-06-07	Nature	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Rheumatoid arthritis	1,860 European ancestry cases, 2,938 European ancestry controls	NA	6p21.32	MHC	rs6457617-T	0.49	5E-75		2.36	[1.97-2.84]	Affymetrix [469557]	N
615	chr6_mcf_hap5	4001014	4001015	rs34677551	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs34677551-C	0.2	1E-8		4.23	[3.24-5.52]	Illumina [NR] (imputed)	N
615	chr6_mcf_hap5	4001032	4001033	rs34392107	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	6p21.32	HLA-DQB1	rs34392107-G	0.883508	6E-45		0.0459707	[0.04-0.052] unit decrease	Affymetrix [NR] (imputed)	N
615	chr6_mcf_hap5	4001077	4001078	rs6457620	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	6p21.32	HLA locus	rs6457620-C	0.51	2E-16		0.029	[NR] unit decrease	Affymetrix, Illumina [2834208] (imputed)	N
615	chr6_mcf_hap5	4001077	4001078	rs6457620	18794853	Raychaudhuri S	2008-09-14	Nat Genet	Common variants at CD40 and other loci confer risk of rheumatoid arthritis.	Rheumatoid arthritis	3,393 European ancestry cases, 12,460 European ancestry controls	3,929 European ancestry cases, 5,807 European ancestry controls	6p21.32	HLA-DRB1	rs6457620-?	0.50	4E-186		2.55	[2.40-2.71]	Affymetrix, Illumina [at least 315971] (imputed)	N
615	chr6_mcf_hap5	4001116	4001117	rs35900855	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs35900855-G	0.2	1E-8		4.23	[3.24-5.52]	Illumina [NR] (imputed)	N
615	chr6_mcf_hap5	4001410	4001411	rs7745040	29534301	Nishida N	2018-03-13	Hepatology	Key HLA-DRB1-DQB1 haplotypes and role of the BTNL2 gene for response to a hepatitis B vaccine.	Response to hepatitis B vaccine	107 Japanese ancestry low responder individuals, 351 Japanese ancestry intermediate responder individuals, 735 Japanese ancestry high responder individuals	NA	6p21.32	HLA-DQA2	rs7745040-?		2E-10		0.162	unit decrease	Affymetrix [427664]	N
615	chr6_mcf_hap5	4001536	4001537	rs2647012	33649182	Penova M	2021-03-01	Proc Natl Acad Sci U S A	Genome wide association study of HTLV-1-associated myelopathy/tropical spastic paraparesis in the Japanese population.	HTLV-1 associated myelopathy	731 Japanese ancestry cases, 846 Japanese ancestry controls	NA	6p21.32		rs2647012-T	0.17	5E-7		0.56	[0.45-0.7]	Illumina [126394]	N
615	chr6_mcf_hap5	4001536	4001537	rs2647012	24925725	Chung SA	2014-06-12	J Am Soc Nephrol	Lupus nephritis susceptibility loci in women with systemic lupus erythematosus.	Lupus nephritis in systemic lupus erythematosus	588 European ancestry cases, 1,412 European ancestry controls	NA	6p21.32	intergenic	rs2647012-?	NR	3E-7	(Additive)	1.52	[1.3-1.75]	Affymetrix, Illumina [1621689] (imputed)	N
615	chr6_mcf_hap5	4001536	4001537	rs2647012	21533074	Smedby KE	2011-04-21	PLoS Genet	GWAS of follicular lymphoma reveals allelic heterogeneity at 6p21.32 and suggests shared genetic susceptibility with diffuse large B-cell lymphoma.	Follicular lymphoma	379 European ancestry cases, 791 European ancestry controls	1,049 European ancestry cases, 3,952 European ancestry controls	6p21.32	HLA-DQB1	rs2647012-G	0.56	2E-21		1.56	[1.43-1.72]	Illumina [298168]	N
615	chr6_mcf_hap5	4001536	4001537	rs2647012	21408207	Chung SA	2011-03-03	PLoS Genet	Differential genetic associations for systemic lupus erythematosus based on anti-dsDNA autoantibody production.	Systemic lupus erythematosus	811 anti-dsDNA positive European ancestry cases, 906 anti-dsDNA negative European ancestry cases, 4,813 European ancestry controls	NA	6p21.32	HLA-DQA2, HLA-DQA1	rs2647012-A	0.44	8E-6	(case-only)	1.38	[1.20-1.59]	Illumina [421318] (imputed)	N
615	chr6_mcf_hap5	4001706	4001707	rs115255544	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs115255544-G	0.2	1E-8		4.23	[3.24-5.52]	Illumina [NR] (imputed)	N
615	chr6_mcf_hap5	4001869	4001870	rs116303320	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Total cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	6p21.32	HLA-DQB1, HLA-DQA2	rs116303320-?		5E-13		0.0603	[0.044-0.077] unit decrease	Illumina [31500000] (imputed)	N
615	chr6_mcf_hap5	4001958	4001959	rs2647003	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.32	NR	rs2647003-?	NR	3E-13				Affymetrix [~ 8270000] (imputed)	N
615	chr6_mcf_hap5	4002038	4002039	rs9357152	21896673	Chen D	2011-09-10	Hum Mol Genet	Genome-wide association study of HPV seropositivity.	HPV seropositivity	1,286 European ancestry lung cancer cases, 679 European ancestry head and neck cancer cases, 811 European ancestry kidney cancer cases, 2,035 European ancestry controls	1,307 Hispanic head and neck cancer cases, 1,037 Hispanic controls		HLA-DQB1	rs9357152-G	0.33	1E-14				Illumina [316015]	N
615	chr6_mcf_hap5	4002193	4002194	rs17206126	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs17206126-T	0.972723	3E-12		0.087804	[0.063-0.112] unit decrease	NR [11722792] (imputed)	N
615	chr6_mcf_hap5	4002203	4002204	rs17212462	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs17212462-T	0.2	1E-8		4.23	[3.24-5.52]	Illumina [NR] (imputed)	N
615	chr6_mcf_hap5	4002328	4002329	rs17212483	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs17212483-T	0.2	9E-9		4.27	[3.27-5.58]	Illumina [NR] (imputed)	N
615	chr6_mcf_hap5	4002498	4002499	rs10484561	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs10484561-G	0.2	2E-8		4.22	[3.22-5.52]	Illumina [NR] (imputed)	N
615	chr6_mcf_hap5	4002498	4002499	rs10484561	20639881	Conde L	2010-07-18	Nat Genet	Genome-wide association study of follicular lymphoma identifies a risk locus at 6p21.32.	Follicular lymphoma	681 European ancestry cases, 750 European ancestry controls	up to 3,164 European ancestry cases, 6,208 European ancestry controls	6p21.32	HLA-DQB1	rs10484561-G	0.11	1E-29	(FL)	1.95	[1.72-2.22]	Illumina [312768]	N
615	chr6_mcf_hap5	4002765	4002766	rs17212553	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs17212553-T	0.2	1E-8		4.23	[3.24-5.52]	Illumina [NR] (imputed)	N
615	chr6_mcf_hap5	4003374	4003375	rs9275319	23242368	Jiang DK	2012-12-16	Nat Genet	Genetic variants in STAT4 and HLA-DQ genes confer risk of hepatitis B virus-related hepatocellular carcinoma.	Hepatocellular carcinoma in hepatitis B infection	1,161 Chinese ancestry cases, 1,353 Chinese ancestry controls	4,319 Chinese ancestry cases, 4,966 Chinese ancestry controls	6p21.32	HLA-DQ	rs9275319-A	0.88	3E-17		1.49	[1.36-1.63]	Illumina [1672517] (imputed)	N
615	chr6_mcf_hap5	4003605	4003606	rs1794282	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.32	BTNL2, XXbac-BPG246D15.9, XXbac-BPG154L12.5, XXbac-BPG154L12.4, C6orf10, HNRNPA1P2, RNU6-603P, HLA-DRA, HLA-DRB9, HLA-DOB	rs1794282-T	0.08080808	3E-19	(EA, MHC class I polypeptide-related sequence B)	0.7066	[0.56-0.86] unit decrease	Affymetrix [509946]	N
615	chr6_mcf_hap5	4003739	4003740	rs9275326	28892059	Chang D	2017-09-11	Nat Genet	A meta-analysis of genome-wide association studies identifies 17 new Parkinson's disease risk loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	5,851 European ancestry cases, 5,866 European ancestry controls	6p21.32	HLA-DRB6, HLA-DQA1	rs9275326-C	0.895	1E-13		1.1764705	[1.12-1.22]	Illumina [11933700] (imputed)	N
615	chr6_mcf_hap5	4003739	4003740	rs9275326	25064009	Nalls MA	2014-07-27	Nat Genet	Large-scale meta-analysis of genome-wide association data identifies six new risk loci for Parkinson's disease.	Parkinson's disease	13,708 European ancestry cases, 95,282 European ancestry controls	5,353 European ancestry cases, 5,551 European ancestry controls	6p21.32	HLA-DQB	rs9275326-C	0.906	1E-12		1.21	[1.16-1.26]	Illumina [7893274] (imputed)	N
615	chr6_mcf_hap5	4004146	4004147	rs17427564	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs17427564-C	0.2	1E-8		4.23	[3.24-5.52]	Illumina [NR] (imputed)	N
615	chr6_mcf_hap5	4004186	4004187	rs9275334	26272072	Jiang X	2015-08-13	Rheumatology (Oxford)	An Immunochip-based interaction study of contrasting interaction effects with smoking in ACPA-positive versus ACPA-negative rheumatoid arthritis.	ACPA-positive rheumatoid arthritis (smoking interaction)	340 European ancestry never-smoker cases, 493 European ancestry ever-smoker cases, 746 European ancestry never-smoker controls, 994 European ancestry ever-smoker controls	187 European ancestry never-smoker cases, 421 European ancestry ever-smoker cases, 461 European ancestry never-smoker controls, 447 European ancestry ever-smoker controls	6p21.32	NR	rs9275334-?	NR	2E-6	(adjusted for HLA shared epitope)	1.724138	[1.22-2.94]	Illumina [133648] (imputed)	N
615	chr6_mcf_hap5	4004250	4004251	rs1794280	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hyperthyroidism	3,557 European ancestry cases, 456,942 European ancestry controls, 994 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	6p21.32		rs1794280-T	NR	2E-44		0.5463	[0.47-0.62] unit increase	Affymetrix, Illumina [25841580] (imputed)	N
615	chr6_mcf_hap5	4004250	4004251	rs1794280	30854688	Wang C	2019-03-10	Hepatology	Genome Wide Association Studies of Specific Antinuclear Autoantibody Sub-phenotypes in Primary Biliary Cholangitis.	Anti-sp100 seropositivity in primary biliary cholangitis	211 Han Chinese ancestry cases, 711 Han Chinese ancestry controls	234 Han Chinese ancestry cases, 1,018 Han Chinese ancestry controls	6p21.32	NR	rs1794280-T	0.181	6E-28		3.89	[3.05-4.96]	Illumina [794531]	N
615	chr6_mcf_hap5	4004443	4004444	rs17427599	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (anti-inflammatory and antirheumatic products, non-steroids)	29,694 East Asian ancestry cases, 149,032 East Asian ancestry controls	NA	6p21.32		rs17427599-T	0.278563857	1E-13		0.07483624	[0.055-0.095] unit increase	Illumina [13429980] (imputed)	N
615	chr6_mcf_hap5	4004552	4004553	rs1794514	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Autoimmune hepatitis	821 European ancestry cases, 484,413 European ancestry controls, 85 East Asian ancestry cases, 166,529 East Asian ancestry controls	NA	6p21.32		rs1794514-C	NR	6E-14		0.5013	[0.37-0.63] unit increase	Affymetrix, Illumina [25843756] (imputed)	N
615	chr6_mcf_hap5	4004585	4004586	rs188230545	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	124,341 East Asian ancestry individuals	NA	6p21.32		rs188230545-T	0.154874	1E-8		0.0301327	[0.02-0.04] unit increase	Illumina [13476323] (imputed)	N
615	chr6_mcf_hap5	4004599	4004600	rs3104394	32534018	Liu X	2020-06-10	Brain Behav Immun	Genetic factors underlying the bidirectional relationship between autoimmune and mental disorders - findings from a Danish population-based study.	Autoimmune traits	1,383 Danish ancestry cases, 62,656 Danish ancestry controls	NA	6p21.32	NR	rs3104394-G	0.16	3E-20		0.57	[0.50-0.65]	NR [7721839] (imputed)	N
615	chr6_mcf_hap5	4004674	4004675	rs2133037	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	IgG levels	15,536 Icelandic ancestry individuals	2,158 Swedish ancestry individuals	6p21.32	HLA-DQB1	rs2133037-A	0.0524	2E-14		0.19	NR SD units decrease	Illumina [21568490] (imputed)	N
615	chr6_mcf_hap5	4004741	4004742	rs9275349	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	Systemic lupus erythematosus	1,639 East Asian ancestry cases, 2,410 East Asian ancestry controls	NA			rs9275349-C	NR	5E-25		0.5726	[0.46-0.68] unit decrease	Illumina [NR] (imputed)	N
615	chr6_mcf_hap5	4004819	4004820	rs2856723	28921602	Lee MH	2017-09-16	Hepatology	Human leukocyte antigen variants and risk of hepatocellular carcinoma modified by hepatitis C virus genotypes: A genome-wide association study.	Hepatocellular carcinoma in hepatitis C infection	502 Chinese ancestry cases, 749 Chinese ancestry controls	669 Chinese ancestry cases, 429 Chinese ancestry controls	6p21.32	HLA-DQB1	rs2856723-?		3E-43		2.68	[2.32-3.09]	Affymetrix [576032]	N
615	chr6_mcf_hap5	4004952	4004953	rs9275358	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p21.32	HLA-DQB1	rs9275358-G	0.475	3E-7		0.083	[0.052-0.114] unit decrease	Affymetrix, Illumina [7374092] (imputed)	N
615	chr6_mcf_hap5	4004967	4004968	rs2647044	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	6p21.32	BRD2, BTNL2, C6orf10, HCG23, HLA-DMA, HLA-DMB, HLA-DOA, HLA-DOB, HLA-DPA1, HLA-DQA1, HLA-DQA2, HLA-DQB1, HLA-DQB2, HLA-DRA, HLA-DRB1, HLA-DRB5, HLA-DRB6, LOC100294145, NOTCH4, PSMB8, PSMB9, TAP1, TAP2, TAPSAR1	rs2647044-A	0.14736	4E-15		1.1522182	[1.12-1.19]	Affymetrix [8274727] (imputed)	N
615	chr6_mcf_hap5	4004967	4004968	rs2647044	21946350	Soler Artigas M	2011-09-25	Nat Genet	Genome-wide association and large-scale follow up identifies 16 new loci influencing lung function.	Pulmonary function	48,201 European ancestry individuals	46,411 European ancestry individuals	6p21.32	HLA-DQB1	rs2647044-G	NR	6E-6	(FEV1/FVC)	0.044	[0.024-0.064] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
615	chr6_mcf_hap5	4004967	4004968	rs2647044	17632545	Hakonarson H	2007-07-15	Nature	A genome-wide association study identifies KIAA0350 as a type 1 diabetes gene.	Type 1 diabetes	467 European ancestry trios, 561 European ancestry cases, 1,143 European ancestry controls	390 European ancestry trios, 1,333 European ancestry cases from 549 families	6p21.32	HLA-DRB1	rs2647044-A	0.13	1E-16		8.3	[6.97-9.89]	Illumina [543071]	N
615	chr6_mcf_hap5	4005021	4005022	rs36030018	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs36030018-C	0.109	3E-36	(conditional)	1.586	[1.51-1.66]	Illumina [11270530] (imputed)	N
615	chr6_mcf_hap5	4005088	4005089	rs2856721	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	6p21.32		rs2856721-C	0.467255784	1E-9		0.056245904	[0.038-0.074] unit decrease	Illumina [13429769] (imputed)	N
615	chr6_mcf_hap5	4005088	4005089	rs2856721	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	46,511 Asian ancestry cases, 169,776 Asian ancestry controls	NA	6p21.32	NR	rs2856721-C	0.4659	5E-10		0.0572	[0.039-0.075] unit decrease	Affymetrix, Illumina [1077427] (imputed)	N
615	chr6_mcf_hap5	4005158	4005159	rs2647045	23349640	Vijai J	2013-01-17	PLoS Genet	Susceptibility loci associated with specific and shared subtypes of lymphoid malignancies.	Lymphoma	275 Follicular non-Hodgkin's Lymphoma cases, 269 diffuse large B-cell non-Hodgkin's Lymphoma cases, 198 other non-Hodgkin's Lymphoma cases, 202 Hodgkin's Lymphoma cases, 4,044 controls	202 European ancestry Follicular non-Hodgkin's Lymphoma cases, 367 European ancestry diffuse large B-cell non-Hodgkin's Lymphoma cases, 577 European ancestry other non-Hodgkin's Lymphoma cases, 99 European ancestry Hodgkin's Lymphoma cases, 2,596 European ancestry controls	6p21.32	HLA-DQA2, HLA-DQB1	rs2647045-?	NR	4E-10	(FL)	1.69	[NR]	Affymetrix [530583]	N
615	chr6_mcf_hap5	4005381	4005382	rs2858310	27286809	Ligthart S	2016-06-10	BMC Genomics	Bivariate genome-wide association study identifies novel pleiotropic loci for lipids and inflammation.	C-reactive protein levels or total cholesterol levels (pleiotropy)	65,000 individuals (C-reactive protein), 100,184 individuals (total cholesterol)	NA	6p21.32	HLA-DQB1	rs2858310-A	NR	4E-12				NR [2501549] (imputed)	N
615	chr6_mcf_hap5	4005394	4005395	rs2647046	23349640	Vijai J	2013-01-17	PLoS Genet	Susceptibility loci associated with specific and shared subtypes of lymphoid malignancies.	Lymphoma	275 Follicular non-Hodgkin's Lymphoma cases, 269 diffuse large B-cell non-Hodgkin's Lymphoma cases, 198 other non-Hodgkin's Lymphoma cases, 202 Hodgkin's Lymphoma cases, 4,044 controls	202 European ancestry Follicular non-Hodgkin's Lymphoma cases, 367 European ancestry diffuse large B-cell non-Hodgkin's Lymphoma cases, 577 European ancestry other non-Hodgkin's Lymphoma cases, 99 European ancestry Hodgkin's Lymphoma cases, 2,596 European ancestry controls	6p21.32	HLA-DQA2, HLA-DQB1	rs2647046-?	NR	2E-6	(NHL)	1.25	[1.14-1.37]	Affymetrix [530583]	N
615	chr6_mcf_hap5	4005497	4005498	rs3135002	29404672	Roshandel D	2018-02-05	Diabetologia	Meta-genome-wide association studies identify a locus on chromosome 1 and multiple variants in the MHC region for serum C-peptide in type 1 diabetes.	Random C-peptide levels in type I diabetes	1,497 European ancestry individuals	NA	6p21.32	MHC	rs3135002-A	0.03	3E-8				Illumina [8320327] (imputed)	N
615	chr6_mcf_hap5	4005497	4005498	rs3135002	29404672	Roshandel D	2018-02-05	Diabetologia	Meta-genome-wide association studies identify a locus on chromosome 1 and multiple variants in the MHC region for serum C-peptide in type 1 diabetes.	C-peptide levels in type I diabetes	3,479 European ancestry individuals	NA	6p21.32	MHC	rs3135002-A	0.03	7E-8				Illumina [7988630] (imputed)	N
615	chr6_mcf_hap5	4006076	4006077	rs1612904	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of HDL particles	115,082 European ancestry individuals	NA	6p21.32		rs1612904-C	0.38135	1E-10		0.0256884	[0.018-0.033] unit decrease	NR [11722792] (imputed)	N
615	chr6_mcf_hap5	4006076	4006077	rs1612904	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Perceived unattractiveness to mosquitoes	16,576 European ancestry individuals	NA	6p21.32	intergenic	rs1612904-C	NR	1E-8		0.136111	[0.089-0.183] unit increase	Illumina [7433384] (imputed)	N
615	chr6_mcf_hap5	4006076	4006077	rs1612904	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.32	Intergenic	rs1612904-C	NR	1E-13		0.0245272	[0.018-0.031] unit increase	Illumina [13520550] (imputed)	N
615	chr6_mcf_hap5	4006214	4006215	rs9275390	21779181	Gorlova O	2011-07-14	PLoS Genet	Identification of novel genetic markers associated with clinical phenotypes of systemic sclerosis through a genome-wide association strategy.	Systemic sclerosis	2,296 European ancestry cases, 5,172 European ancestry controls	3,175 European ancestry cases, 4,210 European ancestry controls	6p21.32	HLA-DQB1	rs9275390-?	0.75	1E-7	(ATA positive)	1.61	[1.35-1.92]	Illumina [NR] (imputed)	N
615	chr6_mcf_hap5	4006214	4006215	rs9275390	21779181	Gorlova O	2011-07-14	PLoS Genet	Identification of novel genetic markers associated with clinical phenotypes of systemic sclerosis through a genome-wide association strategy.	Systemic sclerosis	2,296 European ancestry cases, 5,172 European ancestry controls	3,175 European ancestry cases, 4,210 European ancestry controls	6p21.32	HLA-DQB1	rs9275390-?	0.25	3E-54	(ACA positive)	2.38	[2.13-2.67]	Illumina [NR] (imputed)	N
615	chr6_mcf_hap5	4006430	4006431	rs11752643	31213470	Moon JY	2019-06-18	Diabetes Care	A Genome-Wide Association Study Identifies Blood Disorder-Related Variants Influencing Hemoglobin A1c With Implications for Glycemic Status in U.S. Hispanics/Latinos.	Glycated hemoglobin levels	9,636 Hispanic/Latino individuals	4,777 Hispanic/Latino individuals	6p21.32	HLA-DQA2	rs11752643-T	0.017	2E-6		0.096	[0.061-0.131] % increase	Illumina [11510031] (imputed)	N
615	chr6_mcf_hap5	4006430	4006431	rs11752643	21971053	Takeuchi F	2011-10-05	Eur J Hum Genet	Genome-wide association study of coronary artery disease in the Japanese.	Coronary heart disease	806 Japanese ancestry cases, 1,337 Japanese ancestry controls	3,593 Japanese ancestry cases, 6,335 Japanese ancestry controls	6p21.32	HLA, DRB-DQB	rs11752643-T	0.06	5E-7		1.26	[1.15-1.38]	Illumina [451382]	N
615	chr6_mcf_hap5	4006824	4006825	rs2647050	26030696	Cho MH	2015-06-01	Am J Respir Crit Care Med	A Genome-Wide Association Study of Emphysema and Airway Quantitative Imaging Phenotypes.	Emphysema imaging phenotypes	5,385 European ancestry chronic obstructive pulmonary disease cases, 901 African American chronic obstructive pulmonary disease cases, 3,613 European ancestry controls, 2,132 African American controls	NA	6p21.32	HLA-DQB1	rs2647050-T	NR	1E-6	(Perc15, All)	1.6	[0.66-2.54] unit increase	Illumina [7600000] (imputed)	N
615	chr6_mcf_hap5	4007012	4007013	rs9275406	23918589	Negi S	2013-12-01	Arthritis Rheum	A genome-wide association study reveals ARL15, a novel non-HLA susceptibility gene for rheumatoid arthritis in North Indians.	Rheumatoid arthritis	706 North Indian ancestry cases, 761 North Indian ancestry controls	927 North Indian ancestry cases, 1,148 North Indian ancestry controls	6p21.32	HLA-DQA2, HLA-DQB1, C6orf10, HLA-DQA1	rs9275406-T	0.17	3E-12		2.1	[1.72-2.68]	Illumina [559348]	N
615	chr6_mcf_hap5	4007193	4007194	rs3135001	32276964	Shete S	2020-04-10	Cancer Res	A genome-wide association study identifies two novel susceptible regions for squamous cell carcinoma of the head and neck.	Head and neck squamous cell carcinoma	2,171 European ancestry cases, 4,493 European ancestry controls	5,205 European ancestry cases, 3,232 European ancestry controls	6p21.32	HLA-DQB1	rs3135001-C	0.79	1E-16		1.2987013	[1.22-1.37]	Illumina [7858089] (imputed)	N
615	chr6_mcf_hap5	4007304	4007305	rs2856718	25802187	Jiang DK	2015-04-28	Hepatology	Genetic variants in five novel loci including CFB and CD40 predispose to chronic hepatitis B.	Chronic hepatitis B infection	2,514 Chinese ancestry cases, 1,130 Chinese ancestry controls	6,600 Chinese ancestry cases, 8,127 Chinese ancestry controls	6p21.32	HLA-DQB1	rs2856718-C	0.55	7E-28		1.28	[1.22-1.33]	Illumina [3680900] (imputed)	N
615	chr6_mcf_hap5	4007304	4007305	rs2856718	23760081	Kim YJ	2013-06-10	Hum Mol Genet	A genome-wide association study identified new variants associated with the risk of chronic hepatitis B.	Chronic hepatitis B infection	400 Korean ancestry cases, 1,000 Korean ancestry controls	971 Korean ancestry cases, 1,938 Korean ancestry controls	6p21.32	HLA-DQ	rs2856718-?	NR	2E-24		1.6	[1.46-1.75]	Illumina [719265]	N
615	chr6_mcf_hap5	4007304	4007305	rs2856718	21750111	Mbarek H	2011-07-12	Hum Mol Genet	A genome-wide association study of chronic hepatitis B identified novel risk locus in a Japanese population.	Hepatitis B	458 Japanese ancestry cases, 2,056 Japanese ancestry controls	2,209 Japanese ancestry cases, 4,440 Japanese ancestry controls	6p21.32	HLA-DQB1	rs2856718-A	0.48	4E-37		1.56	[1.45-1.67]	Illumina [423627]	N
615	chr6_mcf_hap5	4007357	4007358	rs2856717	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	6p21.32	HLA-DQB1, HLA-DQA1, HLA-DRB1	rs2856717-G	0.77	5E-10	(East Asian)	1.38	[NR]	Illumina [> 1000000] (imputed)	N
615	chr6_mcf_hap5	4007357	4007358	rs2856717	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	6p21.32	HLA-DQB1, HLA-DQA1, HLA-DRB1	rs2856717-G	0.62	5E-8	(EA)	1.21	[NR]	Illumina [> 1000000] (imputed)	N
615	chr6_mcf_hap5	4007357	4007358	rs2856717	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	6p21.32	HLA-DQB1, HLA-DQA1, HLA-DRB1	rs2856717-G	0.62	1E-15		1.27	[NR]	Illumina [> 1000000] (imputed)	N
615	chr6_mcf_hap5	4007882	4007883	rs34492195	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs34492195-A	0.2	1E-8		4.23	[3.24-5.52]	Illumina [NR] (imputed)	N
615	chr6_mcf_hap5	4007946	4007947	rs2647051	30593799	Vergara C	2018-12-26	Gastroenterology	Multi-Ancestry Genome-Wide Association Study of Spontaneous Clearance of Hepatitis C Virus.	Hepatitis C (spontaneous viral clearance)	701 European ancestry cases, 1,035 European ancestry controls	NA	6p21.32	HLA-DQB1, HLA-DQA2	rs2647051-C	0.64	1E-9		1.79	NR	Illumina [8968220] (imputed)	N
615	chr6_mcf_hap5	4008027	4008028	rs9275428	28706201	Wei WH	2017-07-13	Sci Rep	Genotypic variability based association identifies novel non-additive loci DHCR7 and IRF4 in sero-negative rheumatoid arthritis.	Sero-negative rheumatoid arthritis	3,323 European ancestry cases, 15,785 European ancestry controls	NA	6p21.32	HLA-DQB1	rs9275428-?	NR	2E-24				Illumina [107144]	N
615	chr6_mcf_hap5	4008152	4008153	rs13192471	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Non-melanoma skin cancer	5,912 European ancestry cases, 181,740 European ancestry controls		6p21.32	NR	rs13192471-T	NR	7E-8		1.1493434	[1.09-1.21]	Affymetrix [5734850] (imputed)	N
615	chr6_mcf_hap5	4008152	4008153	rs13192471	20453841	Kochi Y	2010-05-09	Nat Genet	A regulatory variant in CCR6 is associated with rheumatoid arthritis susceptibility.	Rheumatoid arthritis	2,303 Japanese ancestry cases, 3,380 Japanese ancestry controls	4,768 Japanese ancestry cases, 17,359 Japanese ancestry controls	6p21.32	HLA-DRB1	rs13192471-G	0.22	2E-58		1.97	[1.82-2.14]	Illumina [393217]	N
615	chr6_mcf_hap5	4008256	4008257	rs1794511	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	IgD on IgD+ CD24+ B cell	3,656 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs1794511-G	0.25863	7E-13		0.2439	[0.18-0.31] unit decrease	Illumina [18238197] (imputed)	N
615	chr6_mcf_hap5	4008297	4008298	rs1794275	22197929	Yu XQ	2011-12-25	Nat Genet	A genome-wide association study in Han Chinese identifies multiple susceptibility loci for IgA nephropathy.	IgA nephropathy	1,434 Han Chinese ancestry cases, 4,270 Han Chinese ancestry controls	2,703 Han Chinese ancestry cases, 3,464 Han Chinese ancestry controls	6p21.32	HLA-DQA/B	rs1794275-A	0.15	3E-13		1.3	[1.21-1.39]	Illumina [444882]	N
615	chr6_mcf_hap5	4009021	4009022	rs6907732	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on CD33dim HLA DR+ CD11b+	1,634 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs6907732-G	0.45576	3E-8		0.2461	[0.16-0.33] unit increase	Illumina [16998734] (imputed)	N
615	chr6_mcf_hap5	4009136	4009137	rs3134995	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	6p21.32	HLA-DQB1, HLA-DQA2	rs3134995-T	0.242	4E-26		0.0648904	[0.053-0.077] unit decrease	Illumina [13520550] (imputed)	N
615	chr6_mcf_hap5	4009686	4009687	rs9275477	34873335	van Rheenen W	2021-12-06	Nat Genet	Common and rare variant association analyses in amyotrophic lateral sclerosis identify 15 risk loci with distinct genetic architectures and neuron-specific biology.	Amyotrophic lateral sclerosis	27,205 European ancestry cases, 110,881 European ancestry controls, 2,407 East Asian ancestry cases, 11,775 East Asian ancestry controls	NA			rs9275477-C	NR	4E-12		0.142	[0.1-0.18] unit decrease	Illumina [10461755] (imputed)	N
615	chr6_mcf_hap5	4009686	4009687	rs9275477	34873335	van Rheenen W	2021-12-06	Nat Genet	Common and rare variant association analyses in amyotrophic lateral sclerosis identify 15 risk loci with distinct genetic architectures and neuron-specific biology.	Amyotrophic lateral sclerosis	27,205 European ancestry cases, 110,881 European ancestry controls	NA	6p21.32		rs9275477-C	0.096	6E-12		0.143	[0.1-0.18] unit decrease	Illumina [10461755] (imputed)	N
615	chr6_mcf_hap5	4010619	4010620	rs9275495	26272072	Jiang X	2015-08-13	Rheumatology (Oxford)	An Immunochip-based interaction study of contrasting interaction effects with smoking in ACPA-positive versus ACPA-negative rheumatoid arthritis.	ACPA-positive rheumatoid arthritis (smoking interaction)	340 European ancestry never-smoker cases, 493 European ancestry ever-smoker cases, 746 European ancestry never-smoker controls, 994 European ancestry ever-smoker controls	187 European ancestry never-smoker cases, 421 European ancestry ever-smoker cases, 461 European ancestry never-smoker controls, 447 European ancestry ever-smoker controls	6p21.32	NR	rs9275495-?	NR	2E-6	(adjusted for HLA shared epitope)	1.724138	[1.22-2.94]	Illumina [133648] (imputed)	N
615	chr6_mcf_hap5	4010771	4010772	rs9275497	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6p21.32	MTCO3P1	rs9275497-G	0.239038	1E-18		0.025688766	[0.02-0.031] unit increase	Affymetrix [93095623] (imputed)	N
615	chr6_mcf_hap5	4011271	4011272	rs35332745	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs35332745-C	0.2	2E-8		4.11	[3.16-5.35]	Illumina [NR] (imputed)	N
615	chr6_mcf_hap5	4011375	4011376	rs9275511	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Adult onset asthma or type 2 diabetes	33,418 European ancestry asthma cases, 393,186 European ancestry asthma controls, 159,208 European ancestry diabetes cases and controls	NA	6p21.32	NR	rs9275511-?	NR	4E-18				Affymetrix [up to 8270000] (imputed)	N
615	chr6_mcf_hap5	4011689	4011690	rs9275516	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs9275516-A	0.48	1E-8		0.18	[0.13-0.25]	Illumina [NR] (imputed)	N
615	chr6_mcf_hap5	4011771	4011772	rs17206287	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs17206287-A	0.858	2E-12		1.2	[1.15-1.25]	Illumina [11270530] (imputed)	N
615	chr6_mcf_hap5	4011783	4011784	rs1794265	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	NR	rs1794265-C	0.945894807901907	8E-6	(IGP1)	0.3014	[0.17-0.43] unit decrease	Illumina [~ 2500000] (imputed)	N
615	chr6_mcf_hap5	4011783	4011784	rs1794265	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	NR	rs1794265-C	0.945736455079007	1E-6	(IGP19)	0.3272	[0.2-0.46] unit decrease	Illumina [~ 2500000] (imputed)	N
615	chr6_mcf_hap5	4011783	4011784	rs1794265	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	NR	rs1794265-C	0.945425811930783	3E-7	(IGP41)	0.3448	[0.21-0.48] unit decrease	Illumina [~ 2500000] (imputed)	N
615	chr6_mcf_hap5	4012112	4012113	rs17206350	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	MTCO3P1	rs17206350-C	NR	9E-9		0.0179759	[0.012-0.024] unit increase	Affymetrix [323858] (imputed)	N
615	chr6_mcf_hap5	4012112	4012113	rs17206350	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	MTCO3P1	rs17206350-C	NR	4E-8		0.0171917	[0.011-0.023] unit increase	Affymetrix [127266] (imputed)	N
615	chr6_mcf_hap5	4012112	4012113	rs17206350	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	MTCO3P1	rs17206350-C	NR	2E-8		0.0159877	[0.01-0.022] unit increase	Affymetrix [321114] (imputed)	N
615	chr6_mcf_hap5	4012154	4012155	rs9275524	25608926	Betz RC	2015-01-22	Nat Commun	Genome-wide meta-analysis in alopecia areata resolves HLA associations and reveals two new susceptibility loci.	Alopecia areata	2,332 European ancestry cases and 5,233 European ancestry controls	764 European ancestry cases and 2,256 European ancestry controls	6p21.32	HLA-DQB1	rs9275524-C	NR	2E-60		1.92		Illumina [1233578] (imputed)	N
615	chr6_mcf_hap5	4012154	4012155	rs9275524	23453885	Smoller JW	2013-02-27	Lancet	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NA	6p21.32	intergenic	rs9275524-T		2E-7	(Modelling analysis)	1.07	[1.04-1.09]	NR [1252901] (imputed)	N
615	chr6_mcf_hap5	4012515	4012516	rs12525220	24782177	Jiang L	2014-05-01	Arthritis Rheumatol	Novel risk loci for rheumatoid arthritis in Han Chinese and congruence with risk variants in Europeans.	Rheumatoid arthritis	433 Han Chinese ancestry ACPA positive cases, 519 Han Chinese ancestry ACPA negative cases, 943 Han Chinese ancestry controls	1,032 Han Chinese ancestry ACPA positive cases, 1,100 Han Chinese ancestry ACPA negative cases, 2,553 Han Chinese ancestry controls	6p21.32	HLA-DQA2, MHC, HLA-DQB1	rs12525220-A	0.057	7E-14	(ACPA+ cases vs. all controls)	3.015	[NR]	Affymetrix [3441843] (imputed)	N
615	chr6_mcf_hap5	4012515	4012516	rs12525220	24782177	Jiang L	2014-05-01	Arthritis Rheumatol	Novel risk loci for rheumatoid arthritis in Han Chinese and congruence with risk variants in Europeans.	Rheumatoid arthritis	433 Han Chinese ancestry ACPA positive cases, 519 Han Chinese ancestry ACPA negative cases, 943 Han Chinese ancestry controls	1,032 Han Chinese ancestry ACPA positive cases, 1,100 Han Chinese ancestry ACPA negative cases, 2,553 Han Chinese ancestry controls	6p21.32	HLA-DQA2, MHC, HLA-DQB1	rs12525220-A	0.057	3E-12	(all cases vs. all controls)	2.608	[NR]	Affymetrix [3441843] (imputed)	N
615	chr6_mcf_hap5	4012515	4012516	rs12525220	24782177	Jiang L	2014-05-01	Arthritis Rheumatol	Novel risk loci for rheumatoid arthritis in Han Chinese and congruence with risk variants in Europeans.	Rheumatoid arthritis	433 Han Chinese ancestry ACPA positive cases, 519 Han Chinese ancestry ACPA negative cases, 943 Han Chinese ancestry controls	1,032 Han Chinese ancestry ACPA positive cases, 1,100 Han Chinese ancestry ACPA negative cases, 2,553 Han Chinese ancestry controls	6p21.32	HLA-DQA2, MHC, HLA-DQB1	rs12525220-A	0.057	2E-13	(ACPA- cases vs. all controls)	2.869	[NR]	Affymetrix [3441843] (imputed)	N
615	chr6_mcf_hap5	4012568	4012569	rs9275530	26272072	Jiang X	2015-08-13	Rheumatology (Oxford)	An Immunochip-based interaction study of contrasting interaction effects with smoking in ACPA-positive versus ACPA-negative rheumatoid arthritis.	ACPA-positive rheumatoid arthritis (smoking interaction)	340 European ancestry never-smoker cases, 493 European ancestry ever-smoker cases, 746 European ancestry never-smoker controls, 994 European ancestry ever-smoker controls	187 European ancestry never-smoker cases, 421 European ancestry ever-smoker cases, 461 European ancestry never-smoker controls, 447 European ancestry ever-smoker controls	6p21.32	NR	rs9275530-?	NR	2E-6	(adjusted for HLA shared epitope)	1.724138	[1.23-2.94]	Illumina [133648] (imputed)	N
615	chr6_mcf_hap5	4012679	4012680	rs9275532	26272072	Jiang X	2015-08-13	Rheumatology (Oxford)	An Immunochip-based interaction study of contrasting interaction effects with smoking in ACPA-positive versus ACPA-negative rheumatoid arthritis.	ACPA-positive rheumatoid arthritis (smoking interaction)	340 European ancestry never-smoker cases, 493 European ancestry ever-smoker cases, 746 European ancestry never-smoker controls, 994 European ancestry ever-smoker controls	187 European ancestry never-smoker cases, 421 European ancestry ever-smoker cases, 461 European ancestry never-smoker controls, 447 European ancestry ever-smoker controls	6p21.32	NR	rs9275532-?	NR	5E-6	(adjusted for HLA shared epitope)	1.754386	[1.23-3.12]	Illumina [133648] (imputed)	N
615	chr6_mcf_hap5	4013296	4013297	rs3129721	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	IgA nephropathy	1,180 East Asian ancestry cases, 899 East Asian ancestry controls	NA			rs3129721-A	NR	6E-10		0.530478	[0.36-0.7] unit increase	Illumina [NR] (imputed)	N
615	chr6_mcf_hap5	4013296	4013297	rs3129721	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA		NR	rs3129721-?	NR	7E-7		0.0367	[0.022-0.051] unit decrease	Illumina [at least 560000] (imputed)	N
615	chr6_mcf_hap5	4014374	4014375	rs4947344	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	MTCO3P1	rs4947344-T	NR	6E-9		0.0183059	[0.012-0.024] unit decrease	Affymetrix [319769] (imputed)	N
615	chr6_mcf_hap5	4014374	4014375	rs4947344	31375628	Tengvall K	2019-08-02	Proc Natl Acad Sci U S A	Molecular mimicry between Anoctamin 2 and Epstein-Barr virus nuclear antigen 1 associates with multiple sclerosis risk.	Anti-anoctamin 2 antibody levels	11,936 European ancestry individuals	NA	6p21.32	NR	rs4947344-A	NR	1E-9		0.056	[0.032-0.080] unit increase	Illumina [615763]	N
615	chr6_mcf_hap5	4014374	4014375	rs4947344	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p21.32	NR	rs4947344-?	NR	1E-24		0.2606	[0.21-0.31] unit decrease	Illumina [at least 560000] (imputed)	N
615	chr6_mcf_hap5	4014436	4014437	rs9275563	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	MTCO3P1	rs9275563-T	NR	4E-11		0.0202974	[0.014-0.026] unit decrease	Affymetrix [323123] (imputed)	N
615	chr6_mcf_hap5	4014436	4014437	rs9275563	23472185	Mero IL	2013-03-05	PLoS One	Oligoclonal band status in Scandinavian multiple sclerosis patients is associated with specific genetic risk alleles.	Multiple sclerosis (OCB status)	1,367 European ancestry OCB positive cases, 161 European ancestry OCB negative cases, 428 European ancestry controls	NA	6p21.32	HLA-DQA2	rs9275563-?	NR	6E-11	(OCB positive vs. controls)	1.75	[1.47-2.04]	Illumina [495970]	N
615	chr6_mcf_hap5	4014714	4014715	rs6932517	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs6932517-C	0.48	2E-8		0.19	[0.14-0.27]	Illumina [NR] (imputed)	N
615	chr6_mcf_hap5	4014731	4014732	rs9275570	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma and/or BMI	28,862 European ancestry cases, 422,048 European ancestry controls, 6,912 European ancestry individuals	NA	6p21.32	NR	rs9275570-G	NR	2E-19				Affymetrix [~ 8270000] (imputed)	N
615	chr6_mcf_hap5	4014731	4014732	rs9275570	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	6p21.32	NR	rs9275570-?	NR	3E-18				Affymetrix [~ 8270000] (imputed)	N
615	chr6_mcf_hap5	4015128	4015129	rs4273729	23420232	Duggal P	2013-02-19	Ann Intern Med	Genome-wide association study of spontaneous resolution of hepatitis C virus infection: data from multiple cohorts.	Chronic hepatitis C infection	1,482 chronic HCV cases, 919 spontaneously cleared HCV cases	461 chronic HCV cases, 284 spontaneously cleared HCV cases	6p21.32	HLA	rs4273729-?	NR	5E-17		1.59		Illumina [792721] (imputed)	N
615	chr6_mcf_hap5	4015538	4015539	rs9275572	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs9275572-A	0.48	8E-9		0.17	[0.12-0.24]	Illumina [NR] (imputed)	N
615	chr6_mcf_hap5	4015538	4015539	rs9275572	24871463	Armstrong DL	2014-05-29	Genes Immun	GWAS identifies novel SLE susceptibility genes and explains the association of the HLA region.	Systemic lupus erythematosus	725 European ancestry cases, 2,438 European ancestry controls	NA	6p21.32	HLA-DQA2	rs9275572-A	0.4	5E-16		1.74	[1.64-1.85]	Illumina [NR]	N
615	chr6_mcf_hap5	4015538	4015539	rs9275572	24376798	Miki D	2013-12-20	PLoS One	HLA-DQB1*03 confers susceptibility to chronic hepatitis C in Japanese: a genome-wide association study.	Chronic hepatitis C infection	481 Japanese ancestry cases, 2,963 Japanese ancestry controls	5,737 Japanese ancestry cases, 26,931 Japanese ancestry controls	6p21.32	HLA-DQB1, HLA-DQA1	rs9275572-T	0.359	4E-16		1.27	[1.19-1.33]	Illumina [458207]	N
615	chr6_mcf_hap5	4015538	4015539	rs9275572	21499248	Kumar V	2011-04-17	Nat Genet	Genome-wide association study identifies a susceptibility locus for HCV-induced hepatocellular carcinoma.	Hepatocellular carcinoma	721 Japanese ancestry cases, 2,890 Japanese ancestry controls	673 Japanese ancestry cases, 2,596 Japanese ancestry controls	6p21.32	HLA-DQ, HLA-DR	rs9275572-A	0.36	6E-9		1.3	[1.19-1.42]	Illumina [432703]	N
615	chr6_mcf_hap5	4015538	4015539	rs9275572	20596022	Petukhova L	2010-07-01	Nature	Genome-wide association study in alopecia areata implicates both innate and adaptive immunity.	Alopecia areata	Up to 1,054 European ancestry cases, 3,278 European ancestry controls	NA	6p21.32	HLA-DQA2	rs9275572-G	0.59	1E-35		2.21	[1.98-2.47]	Illumina [463301]	N
615	chr6_mcf_hap5	4015864	4015865	rs9275576	31837886	Kennedy OJ	2019-12-02	Am J Kidney Dis	Coffee Consumption and Kidney Function: A Mendelian Randomization Study.	Coffee consumption (cups per day)	227,666 British ancestry individuals	NA	6p21.32	HLA-DQA2	rs9275576-T	0.146	6E-9		0.048	NR cups per day increase	NR [NR]	N
615	chr6_mcf_hap5	4015922	4015923	rs9275578	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs9275578-T	0.31	1E-9		4.62	[3.51-6.10]	Illumina [NR] (imputed)	N
615	chr6_mcf_hap5	4015997	4015998	rs9275579	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	MTCO3P1	rs9275579-A	NR	2E-11		0.0245816	[0.017-0.032] unit decrease	Affymetrix [323123] (imputed)	N
615	chr6_mcf_hap5	4016000	4016001	rs9275580	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs9275580-G	0.33	3E-8		3.96	[3.03-5.19]	Illumina [NR] (imputed)	N
615	chr6_mcf_hap5	4016611	4016612	rs9275582	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs9275582-T	0.31	1E-9		4.54	[3.45-5.98]	Illumina [NR] (imputed)	N
615	chr6_mcf_hap5	4016611	4016612	rs9275582	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (non-Lofgren's syndrome without extrapulmonary manifestations)	451 Swedish ancestry cases, 2,086 Swedish ancestry controls	NA	6p21.32	HLA-DQB1, HLA-DQA2, HLA-DQA1	rs9275582-G	0.83	2E-11		1.8705574	[1.57-2.24]	Illumina [118177]	N
615	chr6_mcf_hap5	4016663	4016664	rs3135461	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs3135461-A	0.841	2E-39		0.726	[0.68-0.77]	Illumina [11270530] (imputed)	N
615	chr6_mcf_hap5	4016663	4016664	rs3135461	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.32		rs3135461-A	0.773542	8E-36		1.0648913	[1.05-1.08]	Affymetrix, Illumina [9851866] (imputed)	N
615	chr6_mcf_hap5	4016920	4016921	rs9275587	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	XXbac-BPG254F23.7	rs9275587-C	NR	5E-9		0.0184889	[0.012-0.025] unit increase	Affymetrix [323858] (imputed)	N
615	chr6_mcf_hap5	4016920	4016921	rs9275587	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	XXbac-BPG254F23.7	rs9275587-C	NR	2E-8		0.0178049	[0.012-0.024] unit increase	Affymetrix [127266] (imputed)	N
615	chr6_mcf_hap5	4017117	4017118	rs7764819	23284291	Hancock DB	2012-12-20	PLoS Genet	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (smoking interaction)	50,047 European ancestry individuals	NA	6p21.32	HLA-DQA2, HLA-DQB1	rs7764819-T	0.89	4E-9	(FEV1/FVC, Pack-years)	1.0E-4	[-0.00014-0.00025] unit decrease	NR [~ 2500000] (imputed)	N
615	chr6_mcf_hap5	4017117	4017118	rs7764819	23284291	Hancock DB	2012-12-20	PLoS Genet	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (smoking interaction)	50,047 European ancestry individuals	NA	6p21.32	HLA-DQA2, HLA-DQB1	rs7764819-T	0.89	4E-9	(FEV1/FVC, Ever-smoking)	0.001	[-0.04016-0.04216] unit decrease	NR [~ 2500000] (imputed)	N
615	chr6_mcf_hap5	4017161	4017162	rs9275592	28041642	Carmona FD	2016-12-29	Am J Hum Genet	A Genome-wide Association Study Identifies Risk Alleles in Plasminogen and P4HA2 Associated with Giant Cell Arteritis.	Giant cell arteritis	2,134 European ancestry cases, 9,125 European ancestry controls	NA	6p21.32	HLA-DQA1, HLA-DQA2	rs9275592-?	0.11	1E-40		2.08	[1.87-2.32]	Illumina [1844133] (imputed)	N
615	chr6_mcf_hap5	4017469	4017470	rs7765379	25383971	Dunstan SJ	2014-11-10	Nat Genet	Variation at HLA-DRB1 is associated with resistance to enteric fever.	Enteric fever	432 Vietnamese ancestry cases, 2,011 Vietnamese ancestry controls	151 Vietnamese ancestry cases,  668 Vietnamese ancestry controls, 595 Nepalese ancestry cases, 386 Nepalese ancestry controls	6p21.32	HLA-DRB1, HLA-DQB1	rs7765379-A	0.945	2E-13		4.55	[2.94-6.67]	Illumina [709725]	N
615	chr6_mcf_hap5	4017469	4017470	rs7765379	23266558	Yamazaki K	2012-12-21	Gastroenterology	A genome-wide association study identifies 2 susceptibility Loci for Crohn's disease in a Japanese population.	Crohn's disease	372 Japanese ancestry cases,3,389 Japanese ancestry controls	Up to 1,151 Japanese ancestry cases, up to 15,800 Japanese ancestry controls	6p21.32	HLA-DQA2, HLA-DOB, HLA-DQB1, PSMB9, HLA-DRB1, HLA-DQA1	rs7765379-G	NR	9E-59		1.93	[1.78-2.09]	Illumina [4929034] (imputed)	N
615	chr6_mcf_hap5	4017469	4017470	rs7765379	21452313	Freudenberg J	2011-04-01	Arthritis Rheum	Genome-wide association study of rheumatoid arthritis in Koreans: population-specific loci as well as overlap with European susceptibility loci.	Rheumatoid arthritis	801 Korean ancestry cases, 757 Korean ancestry controls	718 Korean ancestry cases, 719 Korean ancestry controls	6p21.32	HLA-DRB1	rs7765379-?		5E-23		2.51	[NR]	Illumina [441398]	N
615	chr6_mcf_hap5	4017702	4017703	rs2858332	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	XXbac-BPG254F23.7	rs2858332-T	NR	7E-18		0.0263625	[0.02-0.032] unit decrease	Affymetrix [323123] (imputed)	N
615	chr6_mcf_hap5	4017702	4017703	rs2858332	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	6p21.32	HLA-DQA2	rs2858332-T	0.50665382076412	7E-7	(G_Clostridium_sensu_stricto_RNT)	0.129415	[0.078-0.181] unit decrease	Illumina [7711310] (imputed)	N
615	chr6_mcf_hap5	4017818	4017819	rs2858331	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs2858331-G	0.33	4E-8		3.82	[2.93-4.97]	Illumina [NR] (imputed)	N
615	chr6_mcf_hap5	4017818	4017819	rs2858331	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Non-Hodgkin's lymphoma	2,400 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs2858331-G	NR	3E-7		1.1625204	NR	Affymetrix [7846216] (imputed)	N
615	chr6_mcf_hap5	4017818	4017819	rs2858331	23146381	Levin AM	2012-11-10	J Allergy Clin Immunol	A meta-analysis of genome-wide association studies for serum total IgE in diverse study populations.	IgE levels	2,469 African American individuals, 259 Latino individuals, 1,564 European ancestry individuals	2,961 African American individuals, 1,477 Latino individuals, 649 European ancestry individuals, 680 Hutterite individuals	6p21.32	HLA-DQA2	rs2858331-G	NR	6E-6				Affymetrix, Illumina [NR] (imputed)	N
615	chr6_mcf_hap5	4017818	4017819	rs2858331	22075330	Granada M	2011-11-08	J Allergy Clin Immunol	A genome-wide association study of plasma total IgE concentrations in the Framingham Heart Study.	IgE levels	6,819 European ancestry individuals	7,809 European ancestry indivduals	6p21.32	HLA-DQA2	rs2858331-G	NR	1E-8		0.04	[NR] unit decrease	Affymetrix [2540223] (imputed)	N
615	chr6_mcf_hap5	4017896	4017897	rs9275595	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	6p21.32	HLA-DQA2	rs9275595-T	0.763	6E-6		0.016	[0.0089-0.0227] kg/m2 increase	Affymetrix, Illumina [2550021]	N
615	chr6_mcf_hap5	4017896	4017897	rs9275595	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	6p21.32	HLA-DQA2	rs9275595-T	0.76	9E-6	(EA)	0.016	[0.009-0.0232] kg/m2 increase	Affymetrix, Illumina [2550021]	N
615	chr6_mcf_hap5	4018024	4018025	rs7454108	29857070	Gao J	2018-05-29	J Invest Dermatol	Association study and fine-mapping major histocompatibility complex analysis of pemphigus vulgaris in a Han Chinese population.	Pemphigus vulgaris	240 Han Chinese ancestry cases, 1,031 Han Chinese ancestry controls	252 Han Chinese ancestry cases, 1,852 Han Chinese ancestry controls	6p21.32	NR	rs7454108-?	NR	3E-12	(conditioned on HLA-DRB1*14:04)	3.25	[NR]	Illumina [802980]	N
615	chr6_mcf_hap5	4018024	4018025	rs7454108	28029757	Merkel PA	2016-12-28	Arthritis Rheumatol	Identification of Functional and Expression Polymorphisms Associated With Risk for Antineutrophil Cytoplasmic Autoantibody-Associated Vasculitis.	Vasculitis associated with antineutrophil cytoplasmic antibody reactive to myeloperoxidase	324 European ancestry cases and 3258 European ancestry controls.	54 European ancestry cases and 1465 European ancestry controls.	6p21.32	HLA-DQA2	rs7454108-C	0.10	5E-25		2.73	2.25-3.24	Affymetrix [at least 333035] (imputed)	N
615	chr6_mcf_hap5	4018024	4018025	rs7454108	26272072	Jiang X	2015-08-13	Rheumatology (Oxford)	An Immunochip-based interaction study of contrasting interaction effects with smoking in ACPA-positive versus ACPA-negative rheumatoid arthritis.	ACPA-positive rheumatoid arthritis (smoking interaction)	340 European ancestry never-smoker cases, 493 European ancestry ever-smoker cases, 746 European ancestry never-smoker controls, 994 European ancestry ever-smoker controls	187 European ancestry never-smoker cases, 421 European ancestry ever-smoker cases, 461 European ancestry never-smoker controls, 447 European ancestry ever-smoker controls	6p21.32	NR	rs7454108-?	NR	2E-6	(adjusted for HLA shared epitope)	1.724138	[1.22-2.94]	Illumina [133648] (imputed)	N
615	chr6_mcf_hap5	4018071	4018072	rs3957146	26272072	Jiang X	2015-08-13	Rheumatology (Oxford)	An Immunochip-based interaction study of contrasting interaction effects with smoking in ACPA-positive versus ACPA-negative rheumatoid arthritis.	ACPA-positive rheumatoid arthritis (smoking interaction)	340 European ancestry never-smoker cases, 493 European ancestry ever-smoker cases, 746 European ancestry never-smoker controls, 994 European ancestry ever-smoker controls	187 European ancestry never-smoker cases, 421 European ancestry ever-smoker cases, 461 European ancestry never-smoker controls, 447 European ancestry ever-smoker controls	6p21.32	NR	rs3957146-?	NR	1E-6	(adjusted for HLA shared epitope)	1.724138	[1.22-2.86]	Illumina [133648] (imputed)	N
615	chr6_mcf_hap5	4018172	4018173	rs9275596	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	IgA nephropathy	1,180 East Asian ancestry cases, 899 East Asian ancestry controls	NA	6p21.32	NR	rs9275596-T	NR	6E-10				Illumina [NR] (imputed)	N
615	chr6_mcf_hap5	4018172	4018173	rs9275596	32912934	Li M	2020-09-10	J Am Soc Nephrol	Genome-Wide Meta-Analysis Identifies Three Novel Susceptibility Loci and Reveals Ethnic Heterogeneity of Genetic Susceptibility for IgA Nephropathy.	IgA nephropathy	2,628 Chinese ancestry cases, 11,563 Chinese ancestry controls	6,879 Han Chinese ancestry cases, 9,019 Han Chinese ancestry controls, 1,039 Italian ancestry cases, 1,289 Italian ancestry controls	6p21.32	DQB1.DRB1	rs9275596-T	0.8466025166479287	2E-13	(East Asian)	1.4409347	[1.3070519220741-1.58853123859263]	NR [3611808] (imputed)	N
615	chr6_mcf_hap5	4018172	4018173	rs9275596	25710614	Hong X	2015-02-24	Nat Commun	Genome-wide association study identifies peanut allergy-specific loci and evidence of epigenetic mediation in US children.	Peanut allergy	316 European ancestry child cases, 144 European ancestry non-allergic non-sensitized normal child controls, 589 European ancestry uncertain phenotype child controls, 1,148 European ancestry uncertain phenotype adult controls	62 European ancestry child cases, 69 European ancestry child controls, 24 child cases, 58 child controls	6p21.32	HLA-DRB1, HLA-DQA1, HLA-DQB1, HLA-DQA2	rs9275596-C	0.35	6E-11	(EA)	1.7	[1.40-2.10]	Illumina [6459842] (imputed)	N
615	chr6_mcf_hap5	4018172	4018173	rs9275596	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	6p21.32	HLA-DQB1, HLA-DQA1, HLA-DRB1	rs9275596-T	0.8	1E-19	(East Asian)	1.69	[NR]	Illumina [> 1000000] (imputed)	N
615	chr6_mcf_hap5	4018172	4018173	rs9275596	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	6p21.32	HLA-DQB1, HLA-DQA1, HLA-DRB1	rs9275596-T	0.65	3E-31		1.44	[NR]	Illumina [> 1000000] (imputed)	N
615	chr6_mcf_hap5	4018172	4018173	rs9275596	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	6p21.32	HLA-DQB1, HLA-DQA1, HLA-DRB1	rs9275596-T	0.65	2E-15	(EA)	1.35		Illumina [> 1000000] (imputed)	N
615	chr6_mcf_hap5	4018172	4018173	rs9275596	21399633	Gharavi AG	2011-03-13	Nat Genet	Genome-wide association study identifies susceptibility loci for IgA nephropathy.	Nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls	712 Han Chinese ancestry cases, 748 Han Chinese ancestry controls, 1,238 European ancestry cases, 1,172 European ancestry controls	6p21.32	HLA-DQB1, HLA-DRB1, HLA-DQA1	rs9275596-?	0.73 (EA)	2E-26		1.59	[NR]	Illumina [498322]	N
615	chr6_mcf_hap5	4018210	4018211	rs6935723	25217962	Heap GA	2014-09-14	Nat Genet	HLA-DQA1-HLA-DRB1 variants confer susceptibility to pancreatitis induced by thiopurine immunosuppressants.	Response to thiopurine immunosuppressants in inflammatory bowel disease (pancreatitis) (azathioprine and mercaptopurine)	172 European ancestry cases, 2,035 European ancestry controls	78 European ancestry cases, 472 controls	6p21.32	HLA region	rs6935723-C	0.27	1E-21		2.46	[2.04-2.98]	Affymetrix, Illumina [2819700] (imputed)	N
615	chr6_mcf_hap5	4018217	4018218	rs3104402	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	XXbac-BPG254F23.7	rs3104402-T	NR	3E-10		0.035252	[0.024-0.046] unit increase	Affymetrix [323123] (imputed)	N
615	chr6_mcf_hap5	4018217	4018218	rs3104402	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	6p21.32	NR	rs3104402-?	NR	1E-8		0.1164	[0.076-0.157] unit decrease	Illumina [at least 560000] (imputed)	N
615	chr6_mcf_hap5	4018217	4018218	rs3104402	22658931	Pajewski NM	2012-05-30	Vaccine	A genome-wide association study of host genetic determinants of the antibody response to Anthrax Vaccine Adsorbed.	Immune response to anthrax vaccine	726 European ancestry individuals	NA	6p21.32	HLA-DRB1, HLA-DQA1	rs3104402-A	NR	6E-6		0.165	[0.094-0.236] unit decrease	Affymetrix [736996]	N
615	chr6_mcf_hap5	4018533	4018534	rs3998158	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs3998158-C	0.3	4E-9		4.39	[3.33-5.79]	Illumina [NR] (imputed)	N
615	chr6_mcf_hap5	4018560	4018561	rs3998159	26272072	Jiang X	2015-08-13	Rheumatology (Oxford)	An Immunochip-based interaction study of contrasting interaction effects with smoking in ACPA-positive versus ACPA-negative rheumatoid arthritis.	ACPA-positive rheumatoid arthritis (smoking interaction)	340 European ancestry never-smoker cases, 493 European ancestry ever-smoker cases, 746 European ancestry never-smoker controls, 994 European ancestry ever-smoker controls	187 European ancestry never-smoker cases, 421 European ancestry ever-smoker cases, 461 European ancestry never-smoker controls, 447 European ancestry ever-smoker controls	6p21.32	NR	rs3998159-?	NR	2E-6	(adjusted for HLA shared epitope)	1.724138	[1.22-2.94]	Illumina [133648] (imputed)	N
615	chr6_mcf_hap5	4018676	4018677	rs3957147	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	XXbac-BPG254F23.7	rs3957147-T	NR	5E-9		0.0232882	[0.015-0.031] unit increase	Affymetrix [323123] (imputed)	N
615	chr6_mcf_hap5	4018676	4018677	rs3957147	32534018	Liu X	2020-06-10	Brain Behav Immun	Genetic factors underlying the bidirectional relationship between autoimmune and mental disorders - findings from a Danish population-based study.	Autoimmune traits	1,383 Danish ancestry cases, 62,656 Danish ancestry controls	NA	6p21.32	NR	rs3957147-T	0.21	9E-9		1.34	[1.21-1.48]	NR [7721839] (imputed)	N
615	chr6_mcf_hap5	4018715	4018716	rs3104404	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	150,545 East Asian ancestry individuals	NA	6p21.32		rs3104404-A	0.356773	3E-10		0.0227	[0.016-0.03] unit decrease	Illumina [13478866] (imputed)	N
615	chr6_mcf_hap5	4018740	4018741	rs35122968	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p21.32	HLA-DQA2	rs35122968-C	0.043	4E-11		0.2	[0.14-0.26] unit increase	Affymetrix, Illumina [7374092] (imputed)	N
615	chr6_mcf_hap5	4018748	4018749	rs3129731	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	6p21.32		rs3129731-G	0.795841844	3E-12		0.07240271	[0.052-0.093] unit decrease	Illumina [13134967] (imputed)	N
615	chr6_mcf_hap5	4018769	4018770	rs2894381	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	6p21.32		rs2894381-A	0.422035	4E-8		0.0201838	[0.013-0.027] unit increase	Illumina [13476266] (imputed)	N
615	chr6_mcf_hap5	4018769	4018770	rs2894381	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	121,047 East Asian ancestry individuals	NA	6p21.32	NR	rs2894381-G	0.566792	3E-10		0.026702	[0.018-0.035] SD units decrease	Affymetrix, Illumina [16286195] (imputed)	N
615	chr6_mcf_hap5	4018769	4018770	rs2894381	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p21.32		rs2894381-?	NR	6E-9		0.0142926	[0.0092-0.0194] unit decrease	Affymetrix [20259828] (imputed)	N
615	chr6_mcf_hap5	4018935	4018936	rs3997848	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.32		rs3997848-T	0.676	4E-17				Affymetrix [10369434] (imputed)	N
615	chr6_mcf_hap5	4018935	4018936	rs3997848	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	XXbac-BPG254F23.7	rs3997848-G	NR	2E-8		0.0168279	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
615	chr6_mcf_hap5	4018935	4018936	rs3997848	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	XXbac-BPG254F23.7	rs3997848-G	NR	1E-8		0.0171568	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
615	chr6_mcf_hap5	4018935	4018936	rs3997848	33545615	Hsu LA	2021-01-19	Atherosclerosis	Circulating chemerin levels are determined through circulating platelet counts in nondiabetic Taiwanese people: A bidirectional Mendelian randomization study.	Chemerin levels	3,887 Han Chinese ancestry individuals	NA	6p21.32	HLA	rs3997848-?	NR	5E-8		0.017	[0.012-0.022] unit increase (adjusted)	Affymetrix [610203]	N
615	chr6_mcf_hap5	4018935	4018936	rs3997848	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p21.32	HLA-DQA2	rs3997848-G	0.117	2E-14		0.135	[0.1-0.17] unit increase	Affymetrix, Illumina [7374092] (imputed)	N
615	chr6_mcf_hap5	4018943	4018944	rs3997849	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p21.32	NR	rs3997849-T	0.262	3E-6	(IFNAR2_of_CD8p_T)			Illumina [5084123] (imputed)	N
615	chr6_mcf_hap5	4018970	4018971	rs9275599	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs9275599-T	0.032	2E-16	(conditional)	1.585	[1.48-1.69]	Illumina [11270530] (imputed)	N
615	chr6_mcf_hap5	4019131	4019132	rs113721192	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.32	Intergenic	rs113721192-?		1E-6		1.06	[1.03-1.08]	Illumina [7645193] (imputed)	N
615	chr6_mcf_hap5	4019131	4019132	rs113721192	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.32	Intergenic	rs113721192-?		3E-7		1.76	[1.42-2.18]	Illumina [7645193] (imputed)	N
615	chr6_mcf_hap5	4019205	4019206	rs9275601	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.32		rs9275601-C	0.559	2E-19				Affymetrix [10369434] (imputed)	N
615	chr6_mcf_hap5	4019205	4019206	rs9275601	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.32		rs9275601-C	0.559	1E-20				Affymetrix [10369434] (imputed)	N
615	chr6_mcf_hap5	4019353	4019354	rs9275602	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	XXbac-BPG254F23.7	rs9275602-A	NR	1E-8		0.0219542	[0.014-0.029] unit increase	Affymetrix [323123] (imputed)	N
615	chr6_mcf_hap5	4019353	4019354	rs9275602	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs9275602-?	NR	8E-10				Affymetrix [~ 8270000] (imputed)	N
615	chr6_mcf_hap5	4019353	4019354	rs9275602	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	6p21.32	NR	rs9275602-?	NR	5E-29	(conditional)			Affymetrix [15688218] (imputed)	N
615	chr6_mcf_hap5	4020105	4020106	rs200025476	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.32	NR	rs200025476-T	0.011	3E-9		0.507765	[0.34-0.67] unit increase	Affymetrix [up to 8900000] (imputed)	N
615	chr6_mcf_hap5	4020105	4020106	rs200025476	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.32	NR	rs200025476-T	0.011	2E-6	(women)	0.688868	[0.41-0.97] unit increase	Affymetrix [up to 8900000] (imputed)	N
615	chr6_mcf_hap5	4020221	4020222	rs9391746	33961016	Moksnes MR	2021-05-07	Hum Mol Genet	Genome-wide association study of cardiac troponin I in the general population.	High-sensitivity cardiac troponin I concentration	48,115 European ancestry individuals	NA	6p21.32		rs9391746-T	0.0718	1E-8		0.08	[0.06-0.1] unit increase	Illumina [26711992] (imputed)	N
615	chr6_mcf_hap5	4020885	4020886	rs5024431	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6p21.32		rs5024431-?	NR	6E-17		0.897905	[0.87-0.92]	NR [685523]	N
615	chr6_mcf_hap5	4021055	4021056	rs6457637	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on plasmacytoid Dendritic Cell	2,872 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs6457637-G	0.07647	9E-15		0.4484	[0.34-0.56] unit decrease	Illumina [17926607] (imputed)	N
615	chr6_mcf_hap5	4021476	4021477	rs9275642	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Skin cancer	25,928 European ancestry cases, 466,275 European ancestry controls, 154 East Asian ancestry cases, 178,572 East Asian ancestry controls	NA	6p21.32		rs9275642-T	NR	4E-21		0.1097	[0.087-0.132] unit decrease	Affymetrix, Illumina [25845421] (imputed)	N
615	chr6_mcf_hap5	4021476	4021477	rs9275642	27539887	Chahal HS	2016-08-19	Nat Commun	Genome-wide association study identifies 14 novel risk alleles associated with basal cell carcinoma.	Basal cell carcinoma	12.945 European ancestry cases, 274,252 European ancestry controls	4,242 European ancestry cases, 12,802 European ancestry controls	6p21.32	HLA-DQA2	rs9275642-C	0.79	2E-12		1.1235955	[NR]	Illumina [at least 560000] (imputed)	N
615	chr6_mcf_hap5	4021739	4021740	rs41288885	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.32	XXbac-BPG254F23.7	rs41288885-G	0.058676	5E-9		0.028841805	[0.019-0.039] unit increase	Affymetrix [93095623] (imputed)	N
615	chr6_mcf_hap5	4021739	4021740	rs41288885	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.32	NR	rs41288885-?	NR	9E-10				Affymetrix [~ 8270000] (imputed)	N
615	chr6_mcf_hap5	4021921	4021922	rs3998154	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.32		rs3998154-G	0.585	9E-27				Affymetrix [10369434] (imputed)	N
615	chr6_mcf_hap5	4021921	4021922	rs3998154	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p21.32		rs3998154-G	0.585	1E-22				Affymetrix [10369434] (imputed)	N
615	chr6_mcf_hap5	4022091	4022092	rs3916765	34716350	Lin WY	2021-10-29	Nat Commun	Genome-wide association study identifies susceptibility loci for acute myeloid leukemia.	Acute myeloid leukemia (normal cytogenetics)	3,041 European ancestry cases, 6,760 European ancestry controls	977 European ancestry cases, 3,728 European ancestry controls	6p21.32		rs3916765-G	NR	2E-10		1.72	[1.46-2.03]	Affymetrix, Illumina [6496414] (imputed)	N
615	chr6_mcf_hap5	4022091	4022092	rs3916765	22693455	Perry JR	2012-05-31	PLoS Genet	Stratifying type 2 diabetes cases by BMI identifies genetic risk variants in LAMA1 and enrichment for risk variants in lean compared to obese cases.	Type 2 diabetes	2,112 lean type 2 diabetes cases, 4,123 obese type 2 diabetes cases, 54,412 controls	2,881 lean type 2 diabetes cases, 8,702 obese type 2 diabetes cases, 18,957 controls	6p21.32	HLA-DQA2	rs3916765-A	0.12	1E-6	(Lean)	1.21	[1.12-1.31]	NR [NR]	N
615	chr6_mcf_hap5	4023174	4023175	rs9275667	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	XXbac-BPG254F23.7	rs9275667-T	NR	1E-15		0.0312755	[0.024-0.039] unit decrease	Affymetrix [323858] (imputed)	N
615	chr6_mcf_hap5	4023174	4023175	rs9275667	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	XXbac-BPG254F23.7	rs9275667-T	NR	6E-15		0.0304364	[0.023-0.038] unit decrease	Affymetrix [127266] (imputed)	N
615	chr6_mcf_hap5	4024808	4024809	rs9275698	21804548	Hirota T	2011-07-31	Nat Genet	Genome-wide association study identifies three new susceptibility loci for adult asthma in the Japanese population.	Asthma	1,532 Japanese ancestry cases, 3,304 Japanese ancestry controls	5,639 Japanese ancestry cases, 24,608 Japanese ancestry controls	6p21.32	HLA-DQA2	rs9275698-T	0.79	5E-12		1.18	[1.12-1.24]	Illumina [458847]	N
615	chr6_mcf_hap5	4025056	4025057	rs9275710	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	XXbac-BPG254F23.7	rs9275710-T	NR	1E-9		0.0190333	[0.013-0.025] unit decrease	Affymetrix [323858] (imputed)	N
615	chr6_mcf_hap5	4025056	4025057	rs9275710	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	XXbac-BPG254F23.7	rs9275710-T	NR	9E-9		0.018054	[0.012-0.024] unit decrease	Affymetrix [127266] (imputed)	N
615	chr6_mcf_hap5	4027073	4027074	rs117522574	32771030	Tangtanatakul P	2020-08-08	Arthritis Res Ther	Meta-analysis of genome-wide association study identifies FBN2 as a novel locus associated with systemic lupus erythematosus in Thai population.	Systemic lupus erythematosus	487 Thai cases, 1,606 Thai controls	405 Thai cases, 1,590 Thai controls	6p21.32	XXbac-BPG254F23.7, HLA-DQB3	rs117522574-G	0.19	3E-8		1.5082	[NR]	Illumina [421909] (imputed)	N
615	chr6_mcf_hap5	4028213	4028214	rs9275844	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	XXbac-BPG254F23.7	rs9275844-T	NR	2E-8		0.0217782	[0.014-0.029] unit increase	Affymetrix [323123] (imputed)	N
615	chr6_mcf_hap5	4030435	4030436	rs2858892	30657218	Park SY	2019-01-18	Clin Exp Allergy	Longitudinal analysis to better characterize Asthma-COPD Overlap Syndrome (ACOS): Findings from an adult asthma cohort in Korea (COREA).	Adult asthma	731 Korean ancestry cases, 5,915 Korean ancestry controls	NA	6p21.32	NR	rs2858892-?	NR	4E-7		1.34		NR [267429]	N
615	chr6_mcf_hap5	4031192	4031193	rs114803904	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs114803904-C	0.474	1E-24	(cAMP-specific 3',5'-cyclic phosphodiesterase 4D, PDE4D.5255.22.3)	0.29	[0.23-0.35] unit increase	Affymetrix [10572788] (imputed)	N
615	chr6_mcf_hap5	4032264	4032265	rs73732611	33558538	Gebresilase T	2021-02-08	Sci Rep	Replication of HLA class II locus association with susceptibility to podoconiosis in three Ethiopian ethnic groups.	Podoconiosis	1,137 Ethiopian ancestry cases, 1,152 Ethiopian ancestry controls	NA	6p21.32	HLA-DQB3	rs73732611-C	0.07	5E-9				Illumina [2201695]	N
615	chr6_mcf_hap5	4034973	4034974	rs2859113	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	NR	rs2859113-C	0.378328302013423	6E-8	(IGP59)	0.1817	[0.12-0.25] unit decrease	Illumina [~ 2500000] (imputed)	N
615	chr6_mcf_hap5	4037279	4037280	rs2858884	20711174	Hor H	2010-08-15	Nat Genet	Genome-wide association study identifies new HLA class II haplotypes strongly protective against narcolepsy.	Narcolepsy	562 European ancestry cases, 702 European ancestry controls	370 cases, 495 controls	6p21.32	HLA-DQA2	rs2858884-A	0.81	3E-8		1.79	[1.45-2.17]	Affymetrix [392949]	N
615	chr6_mcf_hap5	4038409	4038410	rs9276244	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	IgA levels	16,883 Icelandic ancestry individuals	2,151 Swedish ancestry individuals	6p21.32	HLA-DQA2	rs9276244-G	0.328	3E-14		0.09	NR SD units increase	Illumina [21568490] (imputed)	N
615	chr6_mcf_hap5	4039163	4039164	rs9276263	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p21.32	NR	rs9276263-?	NR	7E-16		0.1146	[0.087-0.142] unit increase	Illumina [at least 560000] (imputed)	N
615	chr6_mcf_hap5	4044475	4044476	rs9276370	32004448	Savage SA	2020-01-30	Am J Hum Genet	Genome-wide Association Study Identifies HLA-DPB1 as a Significant Risk Factor for Severe Aplastic Anemia.	Severe aplastic anemia	359 European ancestry cases, 1,396 European ancestry controls	175 European ancestry cases, 1,059 European ancestry controls	6p21.32	HLA-DQA2, HLA-DQB2	rs9276370-?	NR	5E-7		1.41	[1.23-1.62]	Illumina [688067]	N
615	chr6_mcf_hap5	4044475	4044476	rs9276370	24940741	Chang SW	2014-06-18	PLoS One	A genome-wide association study on chronic HBV infection and its clinical progression in male Han-Taiwanese.	Chronic hepatitis B infection	321 Chinese ancestry cases, 304 Chinese ancestry controls	1,302 Chinese ancestry cases, 761 Chinese ancestry controls	6p21.32	HLA-DQA2	rs9276370-T	0.076	2E-12		1.95	[1.62-2.34]	Illumina [456262]	N
615	chr6_mcf_hap5	4045546	4045546	rs11426605	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs11426605-T	0.966	3E-15	(conditional)	0.648	[0.54-0.76]	Illumina [11270530] (imputed)	N
615	chr6_mcf_hap5	4047399	4047400	rs9461806	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.32		rs9461806-C	0.595	2E-17				Affymetrix [10369434] (imputed)	N
615	chr6_mcf_hap5	4047399	4047400	rs9461806	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.32		rs9461806-C	0.595	1E-25				Affymetrix [10369434] (imputed)	N
615	chr6_mcf_hap5	4047585	4047586	rs115018313	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	6p21.32		rs115018313-C	NR	7E-33		0.284	[0.24-0.33] unit increase	Affymetrix, Illumina [25845091] (imputed)	N
615	chr6_mcf_hap5	4048031	4048032	rs9276423	26379185	Garcia-Etxebarria K	2015-09-17	PLoS One	No Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity.	Mild influenza (H1N1) infection	107 European ancestry mild cases, 549 European ancestry population controls	NA	6p21.32	HLA-DQA2	rs9276423-?	0.0	3E-8				Affymetrix [547296]	N
615	chr6_mcf_hap5	4049036	4049037	rs9276427	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first birth	542,901 European ancestry individuals	NA	6p21.32	HLA-DQA2	rs9276427-T	0.5217	3E-8		0.0532	[0.034-0.072] unit increase	NR [9744772] (imputed)	N
615	chr6_mcf_hap5	4049036	4049037	rs9276427	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQA2	rs9276427-C	NR	6E-9		0.0164173	[0.011-0.022] unit increase	Affymetrix [319769] (imputed)	N
615	chr6_mcf_hap5	4049036	4049037	rs9276427	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DQA2	rs9276427-C	NR	1E-8		0.0160937	[0.011-0.022] unit increase	Affymetrix [319769] (imputed)	N
615	chr6_mcf_hap5	4049036	4049037	rs9276427	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DQA2	rs9276427-C	NR	3E-8		0.0158296	[0.01-0.021] unit increase	Affymetrix [321169] (imputed)	N
615	chr6_mcf_hap5	4049036	4049037	rs9276427	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.32		rs9276427-C	0.49390500000000004	2E-10		1.0275491	[1.02-1.03]	Affymetrix, Illumina [9851866] (imputed)	N
615	chr6_mcf_hap5	4049188	4049189	rs41288889	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs41288889-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
615	chr6_mcf_hap5	4049849	4049850	rs9276434	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	6p21.32	HLA-DQA2	rs9276434-T	NR	4E-17		0.0479129	[0.037-0.059] unit decrease	Illumina [13520550] (imputed)	N
615	chr6_mcf_hap5	4051050	4051051	rs9276435	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cervical cancer	6,563 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs9276435-C	NR	2E-10		1.1631	NR	Affymetrix [7846216] (imputed)	N
615	chr6_mcf_hap5	4058601	4058602	rs2077046	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQB2	rs2077046-C	NR	2E-8		0.0159433	[0.01-0.021] unit increase	Affymetrix [319769] (imputed)	N
615	chr6_mcf_hap5	4062377	4062378	rs2301271	21408207	Chung SA	2011-03-03	PLoS Genet	Differential genetic associations for systemic lupus erythematosus based on anti-dsDNA autoantibody production.	Systemic lupus erythematosus	811 anti-dsDNA positive European ancestry cases, 906 anti-dsDNA negative European ancestry cases, 4,813 European ancestry controls	NA	6p21.32	HLA-DQA2	rs2301271-T	0.40	2E-12	(anti-dsDNA -)	1.47	[1.32-1.63]	Illumina [421318] (imputed)	N
616	chr6_mcf_hap5	4063460	4063461	rs9276578	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p21.32	HLA-DQB2	rs9276578-G	NR	2E-9		0.0231702	[0.016-0.031] unit decrease	Affymetrix [323858] (imputed)	N
616	chr6_mcf_hap5	4063989	4063990	rs1049110	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	HLA-DQA2, HLA-DQB2	rs1049110-C	0.346381764494382	2E-8	(IGP42)	0.1909	[0.12-0.26] unit increase	Illumina [~ 2500000] (imputed)	N
616	chr6_mcf_hap5	4063989	4063990	rs1049110	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	HLA-DQA2, HLA-DQB2	rs1049110-C	0.34601888034188	4E-8	(IGP2)	0.1853	[0.12-0.25] unit increase	Illumina [~ 2500000] (imputed)	N
616	chr6_mcf_hap5	4064395	4064396	rs9276580	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.32		rs9276580-T	0.46	8E-18				Affymetrix [10369434] (imputed)	N
616	chr6_mcf_hap5	4064511	4064512	rs7753017	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs7753017-A	0.237	5E-43		0.745	[0.7-0.79]	Illumina [11270530] (imputed)	N
616	chr6_mcf_hap5	4065828	4065829	rs2395258	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	6p21.32	HLA-DQB2	rs2395258-T	NR	6E-9		0.0205128	[0.014-0.027] unit increase	Illumina [13519193] (imputed)	N
616	chr6_mcf_hap5	4066244	4066245	rs2006163	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.32		rs2006163-A	0.462	4E-35				Affymetrix [10369434] (imputed)	N
616	chr6_mcf_hap5	4066919	4066920	rs2008560	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQB2	rs2008560-G	NR	3E-12		0.0196979	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
616	chr6_mcf_hap5	4066919	4066920	rs2008560	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DQB2	rs2008560-G	NR	2E-11		0.0189439	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
616	chr6_mcf_hap5	4066919	4066920	rs2008560	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DQB2	rs2008560-G	NR	1E-10		0.0183237	[0.013-0.024] unit increase	Affymetrix [321169] (imputed)	N
616	chr6_mcf_hap5	4066919	4066920	rs2008560	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling worry	372,869 European ancestry individuals	NA	6p21.32	C4B	rs2008560-C	0.496591	3E-8		5.56	unit decrease	NR [10847151] (imputed)	N
616	chr6_mcf_hap5	4067197	4067198	rs7453920	27244555	Li Y	2016-05-31	Nat Commun	Genome-wide association study identifies 8p21.3 associated with persistent hepatitis B virus infection among Chinese.	Persistent hepatitis B virus infection	1,251 Chinese ancestry persistently infected cases, 1,057 Chinese ancestry spontaneously recovered controls	3,905 Chinese ancestry persistently infected cases, 3,356 Chinese ancestry spontaneously recovered controls	6p21.32	HLA-DQB2	rs7453920-A		6E-6		2.0	[1.47-2.78]	Affymetrix, Illumina [up to 4494311] (imputed)	N
616	chr6_mcf_hap5	4067197	4067198	rs7453920	25802187	Jiang DK	2015-04-28	Hepatology	Genetic variants in five novel loci including CFB and CD40 predispose to chronic hepatitis B.	Chronic hepatitis B infection	2,514 Chinese ancestry cases, 1,130 Chinese ancestry controls	6,600 Chinese ancestry cases, 8,127 Chinese ancestry controls	6p21.32	HLA-DQB2	rs7453920-A	0.88	1E-60		2.0	[1.82-2.17]	Illumina [3680900] (imputed)	N
616	chr6_mcf_hap5	4067197	4067198	rs7453920	24940741	Chang SW	2014-06-18	PLoS One	A genome-wide association study on chronic HBV infection and its clinical progression in male Han-Taiwanese.	Chronic hepatitis B infection	321 Chinese ancestry cases, 304 Chinese ancestry controls	1,302 Chinese ancestry cases, 761 Chinese ancestry controls	6p21.32	HLA-DQB2	rs7453920-G	0.051	7E-15		2.31	[1.87-2.85]	Illumina [456262]	N
616	chr6_mcf_hap5	4067197	4067198	rs7453920	24162738	Hu Z	2013-10-27	Nat Genet	New loci associated with chronic hepatitis B virus infection in Han Chinese.	Hepatitis B	951 Han Chinese ancestry HBV carrier cases, 937 Han Chinese ancestry HBV cleared controls	4,230 Chinese ancestry HBV carrier cases, 3,051 Chinese ancestry HBV cleared controls, 2,622 Chinese ancestry controls	6p21.32	HLA-DQB2	rs7453920-G	0.87	5E-37		1.8868	[1.69-2.08]	Illumina [490610]	N
616	chr6_mcf_hap5	4067197	4067198	rs7453920	23760081	Kim YJ	2013-06-10	Hum Mol Genet	A genome-wide association study identified new variants associated with the risk of chronic hepatitis B.	Chronic hepatitis B infection	400 Korean ancestry cases, 1,000 Korean ancestry controls	971 Korean ancestry cases, 1,938 Korean ancestry controls	6p21.32	HLA-DQ	rs7453920-?	NR	7E-26		2.0	[1.72-2.27]	Illumina [719265]	N
616	chr6_mcf_hap5	4067197	4067198	rs7453920	23349640	Vijai J	2013-01-17	PLoS Genet	Susceptibility loci associated with specific and shared subtypes of lymphoid malignancies.	Lymphoma	275 Follicular non-Hodgkin's Lymphoma cases, 269 diffuse large B-cell non-Hodgkin's Lymphoma cases, 198 other non-Hodgkin's Lymphoma cases, 202 Hodgkin's Lymphoma cases, 4,044 controls	202 European ancestry Follicular non-Hodgkin's Lymphoma cases, 367 European ancestry diffuse large B-cell non-Hodgkin's Lymphoma cases, 577 European ancestry other non-Hodgkin's Lymphoma cases, 99 European ancestry Hodgkin's Lymphoma cases, 2,596 European ancestry controls	6p21.32	HLA-DQB2	rs7453920-?	NR	5E-6	(LYM)	1.19	[1.11-1.3]	Affymetrix [530583]	N
616	chr6_mcf_hap5	4067197	4067198	rs7453920	21750111	Mbarek H	2011-07-12	Hum Mol Genet	A genome-wide association study of chronic hepatitis B identified novel risk locus in a Japanese population.	Hepatitis B	458 Japanese ancestry cases, 2,056 Japanese ancestry controls	2,209 Japanese ancestry cases, 4,440 Japanese ancestry controls	6p21.32	HAL-DQB2	rs7453920-G	0.83	6E-28		1.81	[1.62-2.01]	Illumina [423627]	N
616	chr6_mcf_hap5	4067271	4067272	rs2051549	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DQB2	rs2051549-G	NR	4E-9		0.0181006	[0.012-0.024] unit increase	Affymetrix [323123] (imputed)	N
616	chr6_mcf_hap5	4067271	4067272	rs2051549	23053960	Lee YH	2012-10-07	Mol Biol Rep	Genome-wide pathway analysis of genome-wide association studies on systemic lupus erythematosus and rheumatoid arthritis.	Systemic lupus erythematosus	1,527 European ancestry cases, 3,421 European ancestry controls,	NA	6p21.32	HLA-DQA2	rs2051549-?	NR	3E-22				Illumina [737984]	N
616	chr6_mcf_hap5	4068125	4068126	rs2071550	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	6p21.32	SLC44A4, EHMT2, HLA-DQB2, STK19, CYP21A2, TNXB	rs2071550-?	NR	7E-6				Affymetrix, Illumina [18800000] (imputed)	N
616	chr6_mcf_hap5	4068125	4068126	rs2071550	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	6p21.32	SLC44A4, EHMT2, HLA-DQB2, STK19, CYP21A2, TNXB	rs2071550-?	NR	1E-9	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
616	chr6_mcf_hap5	4068125	4068126	rs2071550	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	6p21.32	SLC44A4, EHMT2, HLA-DQB2, STK19, CYP21A2, TNXB	rs2071550-?	NR	5E-8	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
616	chr6_mcf_hap5	4070813	4070814	rs33998906	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQB2	rs33998906-T	NR	5E-8		0.0304833	[0.02-0.041] unit increase	Affymetrix [319769] (imputed)	N
616	chr6_mcf_hap5	4070813	4070814	rs33998906	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DQB2	rs33998906-T	NR	2E-8		0.0314602	[0.021-0.042] unit increase	Affymetrix [319769] (imputed)	N
616	chr6_mcf_hap5	4071489	4071490	rs9276601	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQB2	rs9276601-G	NR	4E-8		0.0202269	[0.013-0.027] unit decrease	Affymetrix [319769] (imputed)	N
616	chr6_mcf_hap5	4073181	4073182	rs9296042	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Scarlet fever	6,812 European ancestry cases, 113,837 European ancestry controls	NA	6p21.32	NR	rs9296042-?	NR	3E-6		0.0873	[0.051-0.124] unit decrease	Illumina [at least 560000] (imputed)	N
616	chr6_mcf_hap5	4073871	4073872	rs9276606	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DQB2	rs9276606-T	NR	1E-9		0.021091	[0.014-0.028] unit decrease	Affymetrix [323858] (imputed)	N
616	chr6_mcf_hap5	4073871	4073872	rs9276606	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	HLA-DQB2	rs9276606-T	NR	2E-9		0.0208414	[0.014-0.028] unit decrease	Affymetrix [127266] (imputed)	N
616	chr6_mcf_hap5	4073871	4073872	rs9276606	23028341	Yang X	2012-09-13	PLoS Genet	Genome-wide association study for serum complement C3 and C4 levels in healthy Chinese subjects.	Complement C3 and C4 levels	1,999 Han Chinese ancestry male individuals	1,496 Han Chinese ancestry male individuals	6p21.32	HLA-DQB	rs9276606-T	0.15	3E-22	(Serum level of C4)	0.09	[0.070-0.110] g/L decrease	Illumina [1940245] (imputed)	N
616	chr6_mcf_hap5	4077590	4077591	rs2857212	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.32		rs2857212-A	0.635	2E-33				Affymetrix [10369434] (imputed)	N
616	chr6_mcf_hap5	4077590	4077591	rs2857212	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.32		rs2857212-A	0.635	2E-31				Affymetrix [10369434] (imputed)	N
616	chr6_mcf_hap5	4077590	4077591	rs2857212	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.32		rs2857212-A	0.635	2E-57				Affymetrix [10369434] (imputed)	N
616	chr6_mcf_hap5	4078185	4078186	rs2621419	33235445	Lee YJ	2020-11-17	Int J Chron Obstruct Pulmon Dis	A Genome-Wide Association Study in Early COPD: Identification of One Major Susceptibility Loci.	Early chronic obstructive pulmonary disease in never smokers	38 Korean ancestry cases, 1,778 Korean ancestry controls	NA	6p21.32	HLA-DQB2	rs2621419-?	NR	9E-6		0.68	NR	Affymetrix [345072]	N
616	chr6_mcf_hap5	4079047	4079048	rs2621416	23349640	Vijai J	2013-01-17	PLoS Genet	Susceptibility loci associated with specific and shared subtypes of lymphoid malignancies.	Lymphoma	275 Follicular non-Hodgkin's Lymphoma cases, 269 diffuse large B-cell non-Hodgkin's Lymphoma cases, 198 other non-Hodgkin's Lymphoma cases, 202 Hodgkin's Lymphoma cases, 4,044 controls	202 European ancestry Follicular non-Hodgkin's Lymphoma cases, 367 European ancestry diffuse large B-cell non-Hodgkin's Lymphoma cases, 577 European ancestry other non-Hodgkin's Lymphoma cases, 99 European ancestry Hodgkin's Lymphoma cases, 2,596 European ancestry controls	6p21.32	HLA-DQB2, TAP2	rs2621416-G	NR	2E-9	(FL)	1.57	[NR]	Affymetrix [530583]	N
616	chr6_mcf_hap5	4079274	4079275	rs9276610	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DQB2	rs9276610-A	NR	1E-9		0.0272626	[0.018-0.036] unit increase	Affymetrix [323123] (imputed)	N
616	chr6_mcf_hap5	4080006	4080007	rs12663317	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	6p21.32	NR	rs12663317-?	NR	6E-12				Affymetrix [~ 8270000] (imputed)	N
616	chr6_mcf_hap5	4081540	4081541	rs2857204	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	6p21.32	intergenic	rs2857204-T	0.327	9E-19		0.03378215	[0.026-0.041] unit decrease	Affymetrix [~ 2500000] (imputed)	N
616	chr6_mcf_hap5	4081633	4081634	rs28724893	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQB2	rs28724893-T	NR	2E-8		0.0157586	[0.01-0.021] unit decrease	Affymetrix [319769] (imputed)	N
616	chr6_mcf_hap5	4081633	4081634	rs28724893	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DQB2	rs28724893-T	NR	4E-11		0.0202278	[0.014-0.026] unit increase	Affymetrix [323123] (imputed)	N
616	chr6_mcf_hap5	4082029	4082030	rs9276643	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6p21.32	NR	rs9276643-C	0.6647	8E-12		1.0858942	[1.06-1.11]	Affymetrix [15688218] (imputed)	N
616	chr6_mcf_hap5	4082029	4082030	rs9276643	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	6p21.32	NR	rs9276643-?	NR	7E-105	(conditional)			Affymetrix [15688218] (imputed)	N
616	chr6_mcf_hap5	4082722	4082723	rs12661352	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs12661352-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
616	chr6_mcf_hap5	4083524	4083525	rs9501203	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.32		rs9501203-T	0.677	8E-12				Affymetrix [10369434] (imputed)	N
616	chr6_mcf_hap5	4086147	4086148	rs28986343	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous malignant melanoma	36,760 European ancestry cases, 375,188 European ancestry controls	NA	6p21.32	HLA-DQB2	rs28986343-C	0.952	2E-8		1.1531	NR	Affymetrix, Illumina [NR] (imputed)	N
616	chr6_mcf_hap5	4088300	4088301	rs7749543	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6p21.32	NR	rs7749543-G	0.6269	8E-10		1.0775862	[1.05-1.1]	Affymetrix [15688218] (imputed)	N
616	chr6_mcf_hap5	4088300	4088301	rs7749543	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	6p21.32	NR	rs7749543-?	NR	8E-115	(conditional)			Affymetrix [15688218] (imputed)	N
616	chr6_mcf_hap5	4088300	4088301	rs7749543	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p21.32	NR	rs7749543-?	NR	3E-6		0.0596	[0.035-0.085] unit increase	Illumina [at least 560000] (imputed)	N
616	chr6_mcf_hap5	4095280	4095281	rs7758736	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DOB	rs7758736-A	NR	1E-9		0.02222	[0.015-0.029] unit decrease	Affymetrix [321169] (imputed)	N
616	chr6_mcf_hap5	4098401	4098402	rs4318925	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DOB	rs4318925-T	NR	3E-9		0.0220014	[0.015-0.029] unit decrease	Affymetrix [321169] (imputed)	N
616	chr6_mcf_hap5	4100409	4100410	rs2857151	22446962	Onouchi Y	2012-03-25	Nat Genet	A genome-wide association study identifies three new risk loci for Kawasaki disease.	Kawasaki disease	428 Japanese ancestry cases, 3,379 Japanese ancestry controls	754 Japanese ancestry cases, 947 Japanese ancestry controls	6p21.32	HLA-DOB, HLA-DQB2	rs2857151-G	0.76	5E-11		1.47	[1.23-1.77]	Illumina [463793]	N
616	chr6_mcf_hap5	4101430	4101431	rs62398467	34011352	Schwarm C	2021-05-19	Orphanet J Rare Dis	Identification of two novel bullous pemphigoid- associated alleles, HLA-DQA1*05:05 and -DRB1*07:01, in Germans.	Bullous pemphigoid	438 German cases, 417 German controls	NA	6p21.32	HLA-DQB2, HLA-DOB	rs62398467-?	NR	7E-6		0.520158	[0.29-0.75] unit increase	Affymetrix [up to 386296] (imputed)	N
616	chr6_mcf_hap5	4102480	4102481	rs9276731	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DOB	rs9276731-T	NR	1E-15		0.0382096	[0.029-0.048] unit decrease	Affymetrix [323858] (imputed)	N
616	chr6_mcf_hap5	4102480	4102481	rs9276731	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	HLA-DOB	rs9276731-T	NR	3E-14		0.0364203	[0.027-0.046] unit decrease	Affymetrix [127266] (imputed)	N
616	chr6_mcf_hap5	4102480	4102481	rs9276731	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p21.32	HLA-DOB	rs9276731-T	NR	1E-8		0.0269325	[0.018-0.036] unit decrease	Affymetrix [323858] (imputed)	N
616	chr6_mcf_hap5	4106287	4106288	rs2621363	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6p21.32	NR	rs2621363-T	0.7091	8E-13		1.0481081	[1.04-1.06]	Affymetrix [15688218] (imputed)	N
616	chr6_mcf_hap5	4106287	4106288	rs2621363	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	6p21.32	NR	rs2621363-?	NR	7E-31	(conditional)			Affymetrix [15688218] (imputed)	N
616	chr6_mcf_hap5	4107378	4107379	rs151165576	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Treatment or medication use - insulin product (UKB data field 20003_1140883066)	4,469 European ancestry cases, 451,807 European ancestry controls	NA	6p21.32		rs151165576-A	0.003916	2E-15		1.58	[1.19-1.97] unit increase	NR [11842647] (imputed)	N
616	chr6_mcf_hap5	4108240	4108241	rs2621355	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.32	Intergenic	rs2621355-G	NR	5E-8		0.0202164	[0.013-0.028] unit increase	Illumina [13520550] (imputed)	N
616	chr6_mcf_hap5	4109755	4109756	rs9276757	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.32		rs9276757-A	0.772	8E-30				Affymetrix [10369434] (imputed)	N
616	chr6_mcf_hap5	4113820	4113821	rs1054684	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DOB	rs1054684-C	NR	2E-10		0.0303692	[0.021-0.04] unit increase	Affymetrix [323123] (imputed)	N
616	chr6_mcf_hap5	4113820	4113821	rs1054684	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.32	TAP2, HLA-DOB	rs1054684-C	0.115598	1E-11		0.03328803	[0.024-0.043] unit increase	Affymetrix [93095623] (imputed)	N
616	chr6_mcf_hap5	4113820	4113821	rs1054684	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	6p21.32	NR	rs1054684-C	0.114999	1E-8		0.0591419	[0.038-0.08] unit increase	Affymetrix [17914406] (imputed)	N
616	chr6_mcf_hap5	4114815	4114818	rs144227975	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs144227975-CTTT	0.665	4E-15	(conditional)	0.864	[0.83-0.9]	Illumina [11270530] (imputed)	N
616	chr6_mcf_hap5	4115322	4115323	rs9276796	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6p21.32	NR	rs9276796-G	0.3953	1E-20		1.058	[1.046-1.07]	Affymetrix [15688218] (imputed)	N
616	chr6_mcf_hap5	4115556	4115557	rs1812006	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.32	Intergenic	rs1812006-G	NR	1E-7	(women)	0.0361932	[0.023-0.05] unit decrease	Illumina [13520550] (imputed)	N
616	chr6_mcf_hap5	4117624	4117625	rs11244	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p21.32	HLA-DOB	rs11244-A	0.43	4E-11				Illumina [118177]	N
616	chr6_mcf_hap5	4118012	4118013	rs2071479	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	6p21.32	HLA-DOB	rs2071479-T	0.0273617407137154	7E-11		0.1473	[0.1-0.19] unit increase	NR [5035015] (imputed)	N
616	chr6_mcf_hap5	4118676	4118677	rs2856997	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DOB, TAP2	rs2856997-A	NR	9E-9		0.0165451	[0.011-0.022] unit decrease	Affymetrix [321016] (imputed)	N
616	chr6_mcf_hap5	4119482	4119483	rs2071474	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Strep throat	52,487 European ancestry cases, 22,017 European ancestry controls	NA	6p21.32	NR	rs2071474-?	NR	6E-6		0.027	[0.015-0.039] unit increase	Illumina [at least 560000] (imputed)	N
616	chr6_mcf_hap5	4119505	4119506	rs2071473	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.32		rs2071473-C	0.671	2E-23				Affymetrix [10369434] (imputed)	N
616	chr6_mcf_hap5	4119505	4119506	rs2071473	33106546	Johnson TA	2020-10-26	J Hum Genet	Association of an IGHV3-66 gene variant with Kawasaki disease.	Kawasaki disease	1,276 East Asian ancestry cases, 5,086 East Asian ancestry controls	2,152 East Asian ancestry cases, 2,751 East Asian ancestry controls	6p21.32	HLA-DOB	rs2071473-T	NR	7E-13		1.26	[1.18-1.34]	Affymetrix, Illumina [6265045] (imputed)	N
616	chr6_mcf_hap5	4119986	4119987	rs7383287	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in ever smokers	23,223 European ancestry cases,  16,964 European ancestry controls	NA	6p21.32	HLA-DOB	rs7383287-G	0.224903192	1E-10		1.1205634	[1.082275651-1.160205575]	Illumina [10439017] (imputed)	N
616	chr6_mcf_hap5	4119986	4119987	rs7383287	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	6p21.32	NR	rs7383287-A	NR	1E-7		1.07	[NR]	Illumina [7158791] (imputed)	N
616	chr6_mcf_hap5	4120305	4120306	rs1383258	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p21.32	HLA-DOB	rs1383258-A	0.04	2E-10	(EA)	3.68	[2.40-5.64]	Illumina [up to 547389]	N
616	chr6_mcf_hap5	4121683	4121684	rs2071469	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Chronic lymphocytic leukemia	764 White British ancestry cases, 272,079 White British ancestry controls	NA	6p21.32		rs2071469-?	NR	7E-6		0.775782	[0.67-0.89]	NR [663083]	N
616	chr6_mcf_hap5	4123812	4123813	rs3763354	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	6p21.32	Intergenic	rs3763354-G	NR	4E-12		0.0433868	[0.031-0.056] unit decrease	Illumina [13520550] (imputed)	N
616	chr6_mcf_hap5	4123931	4123932	rs1894407	24586183	Medici M	2014-02-27	PLoS Genet	Identification of novel genetic Loci associated with thyroid peroxidase antibodies and clinical thyroid disease.	Thyroid peroxidase antibody positivity	1,769 European ancestry cases, 16,528 European ancestry controls	922 European ancestry cases, 8,068 European ancestry controls	6p21.32	NR	rs1894407-C		1E-7		1.17	[1.11-1.24]	Affymetrix, Illumina [up to 3437411] (imputed)	N
616	chr6_mcf_hap5	4124070	4124071	rs9784858	26272072	Jiang X	2015-08-13	Rheumatology (Oxford)	An Immunochip-based interaction study of contrasting interaction effects with smoking in ACPA-positive versus ACPA-negative rheumatoid arthritis.	ACPA-positive rheumatoid arthritis (smoking interaction)	340 European ancestry never-smoker cases, 493 European ancestry ever-smoker cases, 746 European ancestry never-smoker controls, 994 European ancestry ever-smoker controls	187 European ancestry never-smoker cases, 421 European ancestry ever-smoker cases, 461 European ancestry never-smoker controls, 447 European ancestry ever-smoker controls	6p21.32	NR	rs9784858-?	NR	9E-12	(adjusted for HLA shared epitope)	1.4084507	[1.09-1.96]	Illumina [133648] (imputed)	N
616	chr6_mcf_hap5	4125607	4125608	rs2621322	30552173	Aterido A	2018-12-14	Ann Rheum Dis	Genetic variation at the glycosaminoglycan metabolism pathway contributes to the risk of psoriatic arthritis but not psoriasis.	Psoriatic arthritis	744 Spanish ancestry cases, 1,454 Spanish ancestry controls	1,430 cases, 1,417 controls	6p21.32	NR	rs2621322-?	NR	2E-8		5.6	[NR] z-score decrease	Illumina [1387382] (imputed)	N
616	chr6_mcf_hap5	4126295	4126296	rs151027268	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.32	NR	rs151027268-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
616	chr6_mcf_hap5	4130410	4130411	rs13501	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	TAP2	rs13501-A	NR	3E-9		0.0199818	[0.013-0.027] unit decrease	Affymetrix [323123] (imputed)	N
616	chr6_mcf_hap5	4131919	4131920	rs10484565	26272072	Jiang X	2015-08-13	Rheumatology (Oxford)	An Immunochip-based interaction study of contrasting interaction effects with smoking in ACPA-positive versus ACPA-negative rheumatoid arthritis.	ACPA-positive rheumatoid arthritis (smoking interaction)	340 European ancestry never-smoker cases, 493 European ancestry ever-smoker cases, 746 European ancestry never-smoker controls, 994 European ancestry ever-smoker controls	187 European ancestry never-smoker cases, 421 European ancestry ever-smoker cases, 461 European ancestry never-smoker controls, 447 European ancestry ever-smoker controls	6p21.32	NR	rs10484565-?	NR	7E-10	(adjusted for HLA shared epitope)	1.4285715	[1.09-2.13]	Illumina [133648] (imputed)	N
616	chr6_mcf_hap5	4133113	4133114	rs241453	32492067	Ruffieux H	2020-06-03	PLoS Comput Biol	A fully joint Bayesian quantitative trait locus mapping of human protein abundance in plasma.	Protein quantitative trait loci	376 European ancestry individuals	400 European ancestry individuals	6p21.32	NR	rs241453-?	NR	2E-6	(C4a)			Illumina [~ 4000000] (imputed)	N
616	chr6_mcf_hap5	4134002	4134003	rs241443	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	6p21.32	TAP2	rs241443-G	0.294917	2E-19		0.022992264	[0.018-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
616	chr6_mcf_hap5	4134660	4134661	rs2228391	26151496	Chen PL	2015-07-07	Nat Commun	Genetic determinants of antithyroid drug-induced agranulocytosis by human leukocyte antigen genotyping and genome-wide association study.	Thionamide-induced agranulocytosis in Graves' disease	21 East Asian ancestry cases with agranulocytosis, 662 East Asian ancestry cases without agranulocytosis	21 East Asian ancestry cases with agranulocytosis, 546 East Asian ancestry cases without agranulocytosis	6p21.32	HLA	rs2228391-C	0.108	4E-7	(trend)	3.32	[2.02-5.46] (allelic)	Affymetrix [522980]	N
616	chr6_mcf_hap5	4134763	4134764	rs241436	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6p21.32		rs241436-?	NR	7E-9		1.06498	[1.04-1.09]	NR [685523]	N
616	chr6_mcf_hap5	4134763	4134764	rs241436	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in lean individuals	up to 5,529 European ancestry male individuals, up to 9,753 European ancestry female individuals	NA	6p21.32	TAP2	rs241436-G	0.49	8E-6	(men)	0.089	[0.05-0.128] kg/m2 increase	Affymetrix, Illumina [at least 188473] (imputed)	N
616	chr6_mcf_hap5	4135618	4135619	rs1015166	29534301	Nishida N	2018-03-13	Hepatology	Key HLA-DRB1-DQB1 haplotypes and role of the BTNL2 gene for response to a hepatitis B vaccine.	Response to hepatitis B vaccine	107 Japanese ancestry low responder individuals, 351 Japanese ancestry intermediate responder individuals, 735 Japanese ancestry high responder individuals	NA	6p21.32	TAP2	rs1015166-?		1E-8		0.16	unit decrease	Affymetrix [427664]	N
616	chr6_mcf_hap5	4135618	4135619	rs1015166	25936594	Tomer Y	2015-04-27	J Autoimmun	Genome wide identification of new genes and pathways in patients with both autoimmune thyroiditis and type 1 diabetes.	Type 1 diabetes and autoimmune thyroid diseases	346 European ancestry cases, 727 European ancestry controls	185 European ancestry cases, 340 European ancestry controls	6p21.32	TAP2	rs1015166-T	NR	4E-22		2.1428		Illumina [514008]	N
616	chr6_mcf_hap5	4136732	4136733	rs60045856	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	6p21.32	NR	rs60045856-G	0.11004825178496	5E-12		0.0101193655	[0.0072-0.013] unit decrease	NR [NR]	N
616	chr6_mcf_hap5	4136732	4136733	rs60045856	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p21.32	NR	rs60045856-?	NR	3E-8		0.0829	[0.054-0.112] unit increase	Illumina [at least 560000] (imputed)	N
616	chr6_mcf_hap5	4139339	4139340	rs62397688	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	IgA nephropathy	1,180 East Asian ancestry cases, 899 East Asian ancestry controls	NA			rs62397688-A	NR	4E-6		0.58857	[0.34-0.84] unit decrease	Illumina [NR] (imputed)	N
616	chr6_mcf_hap5	4139684	4139685	rs4148872	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Diastolic blood pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	6p21.32	HLA	rs4148872-T	0.148057452	2E-7		0.2012	[0.13-0.28] unit increase	Affymetrix [~ 9800000] (imputed)	N
616	chr6_mcf_hap5	4140285	4140286	rs28724898	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p21.32	NR	rs28724898-?	NR	4E-13		0.1556	[0.11-0.2] unit decrease	Illumina [at least 560000] (imputed)	N
616	chr6_mcf_hap5	4140717	4140718	rs241429	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	TAP2	rs241429-A	NR	3E-8		0.0169285	[0.011-0.023] unit increase	Affymetrix [323123] (imputed)	N
616	chr6_mcf_hap5	4140947	4140948	rs241428	23028341	Yang X	2012-09-13	PLoS Genet	Genome-wide association study for serum complement C3 and C4 levels in healthy Chinese subjects.	Complement C3 and C4 levels	1,999 Han Chinese ancestry male individuals	1,496 Han Chinese ancestry male individuals	6p21.32	HLA-DQB	rs241428-G	0.08	9E-83	(Serum level of C4)	0.23	[0.21-0.25] g/L increase	Illumina [1940245] (imputed)	N
616	chr6_mcf_hap5	4141096	4141097	rs3819715	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (mother's age at death or mother's attained age)	up to 699,000 individuals	NA	6p21.32	NR	rs3819715-C		7E-6				Illumina [458525]	N
616	chr6_mcf_hap5	4141176	4141177	rs3819717	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (non-Lofgren's syndrome without extrapulmonary manifestations)	451 Swedish ancestry cases, 2,086 Swedish ancestry controls	NA	6p21.32	TAP2, PSMB9, HLA-DMB, HLA-DPB1	rs3819717-G	0.515	2E-6		1.434	[1.249-1.648]	Illumina [118177]	N
616	chr6_mcf_hap5	4141291	4141292	rs241427	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p21.32	TAP2	rs241427-G	0.797	4E-6		0.062	[0.035-0.089] unit decrease	Affymetrix, Illumina [7374092] (imputed)	N
616	chr6_mcf_hap5	4141447	4141448	rs3819720	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.32	NR	rs3819720-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
616	chr6_mcf_hap5	4141447	4141448	rs3819720	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs3819720-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
616	chr6_mcf_hap5	4141447	4141448	rs3819720	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p21.32	NR	rs3819720-?	NR	1E-12		0.1645	[0.12-0.21] unit decrease	Illumina [at least 560000] (imputed)	N
616	chr6_mcf_hap5	4141756	4141757	rs1871665	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.32		rs1871665-T	0.55322	1E-12		1.0307605	[1.02-1.04]	Affymetrix, Illumina [9851866] (imputed)	N
616	chr6_mcf_hap5	4141926	4141927	rs2239701	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	Composite immunoglobulin trait (IgA/IgG)	14,183 Icelandic ancestry individuals	2,146 Swedish ancestry individuals	6p21.32	TAP2	rs2239701-C	0.368	3E-10		0.08	NR SD units decrease	Illumina [21568490] (imputed)	N
616	chr6_mcf_hap5	4142184	4142185	rs2071466	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.32		rs2071466-C	0.704	1E-10				Affymetrix [10369434] (imputed)	N
616	chr6_mcf_hap5	4142184	4142185	rs2071466	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p21.32	TAP2	rs2071466-T		1E-24		0.024	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
616	chr6_mcf_hap5	4143265	4143266	rs4148870	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p21.32	TAP2	rs4148870-C	0.402	2E-6		0.053	[0.031-0.075] unit increase	Affymetrix, Illumina [7374092] (imputed)	N
616	chr6_mcf_hap5	4143427	4143428	rs74365910	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Ulcerative colitis (PheCode 555.2)	2,569 European ancestry cases, 453,779 European ancestry controls	NA	6p21.32		rs74365910-A	0.009189	9E-10		0.97	[0.66-1.28] unit increase	NR [11842647] (imputed)	N
616	chr6_mcf_hap5	4143427	4143428	rs74365910	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Treatment or medication use - levothyroxine sodium (UKB data field 20003_1141191044)	18,688 European ancestry cases, 437,588 European ancestry controls	NA	6p21.32		rs74365910-A	0.009068	2E-15		0.46	[0.35-0.57] unit increase	NR [11842647] (imputed)	N
616	chr6_mcf_hap5	4144366	4144367	rs114595701	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	6p21.32	NR	rs114595701-T	0.0925422107617213	2E-9		0.012502657	[0.0084-0.0166] unit decrease	NR [NR]	N
616	chr6_mcf_hap5	4144366	4144367	rs114595701	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	6p21.32	NR	rs114595701-T	0.0925422107617213	6E-9		0.013367118	[0.0089-0.0179] unit decrease	NR [NR]	N
616	chr6_mcf_hap5	4144366	4144367	rs114595701	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	6p21.32	NR	rs114595701-T	0.0925422107617213	2E-9		0.010604257	[0.0071-0.0141] unit decrease	NR [NR]	N
616	chr6_mcf_hap5	4145175	4145176	rs45506201	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	6p21.32	NR	rs45506201-A	0.0926176111889165	4E-9		0.015973978	[0.011-0.021] unit decrease	NR [NR]	N
616	chr6_mcf_hap5	4146724	4146725	rs9357155	21399633	Gharavi AG	2011-03-13	Nat Genet	Genome-wide association study identifies susceptibility loci for IgA nephropathy.	Nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls	712 Han Chinese ancestry cases, 748 Han Chinese ancestry controls, 1,238 European ancestry cases, 1,172 European ancestry controls	6p21.32	TAP2, TAP1, PSMB8, PSMB9	rs9357155-?	0.87 (EA)	2E-12		1.41	[NR]	Illumina [498322]	N
616	chr6_mcf_hap5	4148505	4148506	rs2071543	32912934	Li M	2020-09-10	J Am Soc Nephrol	Genome-Wide Meta-Analysis Identifies Three Novel Susceptibility Loci and Reveals Ethnic Heterogeneity of Genetic Susceptibility for IgA Nephropathy.	IgA nephropathy	2,628 Chinese ancestry cases, 11,563 Chinese ancestry controls	6,879 Han Chinese ancestry cases, 9,019 Han Chinese ancestry controls, 1,039 Italian ancestry cases, 1,289 Italian ancestry controls	6p21.32	PSMB8	rs2071543-G	0.8187836227622588	1E-6	(East Asian)	1.2505606	[1.14305470436016-1.36817776509077]	NR [3611808] (imputed)	N
616	chr6_mcf_hap5	4148505	4148506	rs2071543	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	6p21.32	PSMB9, TAP1, TAP2, PSMB8	rs2071543-G	0.80	2E-9	(East Asian)	1.41	[NR]	Illumina [> 1000000] (imputed)	N
616	chr6_mcf_hap5	4149404	4149405	rs2071463	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	6p21.32		rs2071463-?	NR	5E-8				Affymetrix [NR] (imputed)	N
616	chr6_mcf_hap5	4154904	4154905	rs113206908	32771030	Tangtanatakul P	2020-08-08	Arthritis Res Ther	Meta-analysis of genome-wide association study identifies FBN2 as a novel locus associated with systemic lupus erythematosus in Thai population.	Systemic lupus erythematosus	487 Thai cases, 1,606 Thai controls	405 Thai cases, 1,590 Thai controls	6p21.32	PSMB9	rs113206908-G	0.21	4E-7		1.4327	[NR]	Illumina [421909] (imputed)	N
616	chr6_mcf_hap5	4155552	4155553	rs2071538	32534018	Liu X	2020-06-10	Brain Behav Immun	Genetic factors underlying the bidirectional relationship between autoimmune and mental disorders - findings from a Danish population-based study.	Autoimmune traits	1,383 Danish ancestry cases, 62,656 Danish ancestry controls	NA	6p21.32	NR	rs2071538-A	0.24	8E-10		0.74	[0.67-0.82]	NR [7721839] (imputed)	N
616	chr6_mcf_hap5	4158323	4158324	rs2071536	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	PSMB9, TAP1	rs2071536-T	NR	5E-8		0.0260034	[0.017-0.035] unit decrease	Affymetrix [323123] (imputed)	N
616	chr6_mcf_hap5	4158323	4158324	rs2071536	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.32		rs2071536-T	0.111873	8E-10		1.0421276	[1.03-1.05]	Affymetrix, Illumina [9851866] (imputed)	N
616	chr6_mcf_hap5	4159120	4159121	rs17220241	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.32	HLA-Z, TAP2, PSMB9, PSMB8-AS1, XXbac-BPG246D15.9, TAP1, PSMB8	rs17220241-T	0.02156469	1E-21	(EA, Alpha-2-macroglobulin receptor-associated protein)	1.387	[1.11-1.66] unit increase	Affymetrix [509946]	N
616	chr6_mcf_hap5	4166886	4166887	rs7767288	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	6p21.32	PSMB9	rs7767288-A	0.4112	1E-11		0.02464776	[0.018-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
616	chr6_mcf_hap5	4169651	4169652	rs1055559	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	6p21.32	NR	rs1055559-?	NR	9E-7		0.079	[0.047-0.111] unit increase	Illumina [at least 560000] (imputed)	N
616	chr6_mcf_hap5	4169651	4169652	rs1055559	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	6p21.32	Intergenic	rs1055559-T	NR	4E-9		0.039613	[0.026-0.053] unit decrease	Illumina [13520550] (imputed)	N
616	chr6_mcf_hap5	4179843	4179844	rs6903433	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.32		rs6903433-C	0.87	7E-9				Affymetrix [10369434] (imputed)	N
616	chr6_mcf_hap5	4189481	4189482	rs2187689	22993228	Williams FM	2012-09-19	Ann Rheum Dis	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NA	6p21.32	PSMB9	rs2187689-C	0.08	3E-8		0.23	[0.15-0.31] unit increase	Affymetrix, Illumina [2552511] (imputed)	N
616	chr6_mcf_hap5	4190111	4190112	rs7767732	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.32		rs7767732-C	0.822	3E-21				Affymetrix [10369434] (imputed)	N
616	chr6_mcf_hap5	4191527	4191528	rs10046257	22993228	Williams FM	2012-09-19	Ann Rheum Dis	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NA	6p21.32	intergenic	rs10046257-A	0.10	3E-7		0.19	[0.12-0.26] unit increase	Affymetrix, Illumina [2552511] (imputed)	N
616	chr6_mcf_hap5	4192547	4192548	rs6457690	22993228	Williams FM	2012-09-19	Ann Rheum Dis	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NA	6p21.32	intergenic	rs6457690-A	0.10	9E-8		0.19	[0.12-0.26] unit increase	Affymetrix, Illumina [2552511] (imputed)	N
616	chr6_mcf_hap5	4193216	4193217	rs1029296	22993228	Williams FM	2012-09-19	Ann Rheum Dis	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NA	6p21.32	intergenic	rs1029296-C	0.10	9E-8		0.19	[0.12-0.26] unit increase	Affymetrix, Illumina [2552511] (imputed)	N
616	chr6_mcf_hap5	4193317	4193318	rs1029295	22993228	Williams FM	2012-09-19	Ann Rheum Dis	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NA	6p21.32	intergenic	rs1029295-C	0.10	5E-7		0.19	[0.12-0.26] unit increase	Affymetrix, Illumina [2552511] (imputed)	N
616	chr6_mcf_hap5	4193769	4193770	rs6936004	22993228	Williams FM	2012-09-19	Ann Rheum Dis	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NA	6p21.32	intergenic	rs6936004-C	0.10	1E-7		0.19	[0.12-0.26] unit increase	Affymetrix, Illumina [2552511] (imputed)	N
616	chr6_mcf_hap5	4194252	4194253	rs10214886	22993228	Williams FM	2012-09-19	Ann Rheum Dis	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NA	6p21.32	intergenic	rs10214886-A	0.10	2E-7		0.19	[0.12-0.26] unit increase	Affymetrix, Illumina [2552511] (imputed)	N
617	chr6_mcf_hap5	4194369	4194370	rs10214760	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6p21.32	TAP1	rs10214760-?	NR	3E-6	(dimethylglycine)	0.3002602	[0.17-0.43] unit decrease	Affymetrix [at least 2500000] (imputed)	N
617	chr6_mcf_hap5	4196545	4196546	rs7744666	22993228	Williams FM	2012-09-19	Ann Rheum Dis	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NA	6p21.32	intergenic	rs7744666-C	0.10	6E-8		0.2	[0.13-0.27] unit increase	Affymetrix, Illumina [2552511] (imputed)	N
617	chr6_mcf_hap5	4196581	4196582	rs11969002	22993228	Williams FM	2012-09-19	Ann Rheum Dis	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NA	6p21.32	intergenic	rs11969002-A	0.10	6E-8		0.2	[0.13-0.27] unit increase	Affymetrix, Illumina [2552511] (imputed)	N
617	chr6_mcf_hap5	4197585	4197586	rs9469300	22993228	Williams FM	2012-09-19	Ann Rheum Dis	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NA	6p21.32	intergenic	rs9469300-A	0.10	1E-7		0.19	[0.12-0.26] unit increase	Affymetrix, Illumina [2552511] (imputed)	N
617	chr6_mcf_hap5	4199440	4199441	rs3749982	22993228	Williams FM	2012-09-19	Ann Rheum Dis	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NA	6p21.32	intergenic	rs3749982-A	0.10	1E-7		0.19	[0.12-0.26] unit increase	Affymetrix, Illumina [2552511] (imputed)	N
617	chr6_mcf_hap5	4202928	4202929	rs9276916	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	Systemic lupus erythematosus	1,639 East Asian ancestry cases, 2,410 East Asian ancestry controls	NA			rs9276916-G	NR	2E-8		0.2244	[0.15-0.3] unit increase	Illumina [NR] (imputed)	N
617	chr6_mcf_hap5	4206897	4206898	rs3101942	26297903	Fabbri C	2015-08-20	Prog Neuropsychopharmacol Biol Psychiatry	Genetics of long-term treatment outcome in bipolar disorder.	Manic episodes in bipolar disorder	706 European ancestry cases	NA	6p21.32	LOC100294145	rs3101942-?	NR	7E-6		1.733	[1.365-2.201]	Affymetrix [329806] (imputed)	N
617	chr6_mcf_hap5	4209758	4209759	rs574560492	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs574560492-?	NR	5E-8				Affymetrix [~ 8270000] (imputed)	N
617	chr6_mcf_hap5	4225088	4225089	rs117231810	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.32	Intergenic	rs117231810-?		4E-6		1.06	[1.03-1.08]	Illumina [7645193] (imputed)	N
617	chr6_mcf_hap5	4225088	4225089	rs117231810	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.32	Intergenic	rs117231810-?		1E-6		1.69	[1.37-2.09]	Illumina [7645193] (imputed)	N
617	chr6_mcf_hap5	4228186	4228187	rs194679	32534018	Liu X	2020-06-10	Brain Behav Immun	Genetic factors underlying the bidirectional relationship between autoimmune and mental disorders - findings from a Danish population-based study.	Autoimmune traits	1,383 Danish ancestry cases, 62,656 Danish ancestry controls	NA	6p21.32	NR	rs194679-T	0.047	1E-9		1.62	[1.4-1.87]	NR [7721839] (imputed)	N
617	chr6_mcf_hap5	4237232	4237234	rs57390839	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	6p21.32	PSMB9, HLA-DMB	rs57390839-?	NR	2E-15		0.303437	[0.23-0.38] unit increase	Illumina [at least 950000] (imputed)	N
617	chr6_mcf_hap5	4237232	4237234	rs57390839	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p21.32	NR	rs57390839-?	NR	1E-7		0.0931	[0.058-0.128] unit increase	Illumina [at least 560000] (imputed)	N
617	chr6_mcf_hap5	4240889	4240890	rs77318243	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DMB	rs77318243-A	NR	3E-11		0.0352508	[0.025-0.046] unit decrease	Affymetrix [323858] (imputed)	N
617	chr6_mcf_hap5	4240889	4240890	rs77318243	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	HLA-DMB	rs77318243-A	NR	2E-10		0.0339654	[0.024-0.044] unit decrease	Affymetrix [127266] (imputed)	N
617	chr6_mcf_hap5	4244823	4244824	rs147725790	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6p21.32	NR	rs147725790-T	0.98229	2E-12		1.1804981	[1.13-1.23]	Affymetrix [15688218] (imputed)	N
617	chr6_mcf_hap5	4248180	4248181	rs116560929	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.32	NR	rs116560929-A	0.01045	3E-9	(FHL1)	0.008308	NR unit increase	Illumina [1671387] (imputed)	N
617	chr6_mcf_hap5	4248180	4248181	rs116560929	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.32	NR	rs116560929-A	0.01045	3E-10	(TAGLN)	0.4341	NR unit increase	Illumina [1671387] (imputed)	N
617	chr6_mcf_hap5	4248180	4248181	rs116560929	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.32	NR	rs116560929-A	0.01045	2E-8	(CNN2)	0.01914	NR unit increase	Illumina [1671387] (imputed)	N
617	chr6_mcf_hap5	4248666	4248667	rs2395296	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs2395296-A	NR	9E-8		1.089	[1.055-1.124]	Affymetrix [7846216] (imputed)	N
617	chr6_mcf_hap5	4250098	4250099	rs1480380	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p21.32	HLA-DMB, HLA-DMA	rs1480380-A	0.252	6E-23				Illumina [118177]	N
617	chr6_mcf_hap5	4250098	4250099	rs1480380	23453885	Smoller JW	2013-02-27	Lancet	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NA	6p21.32	NR	rs1480380-C	0.908	6E-7	(Modelling analysis)			NR [1252901] (imputed)	N
617	chr6_mcf_hap5	4250098	4250099	rs1480380	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.32	intergenic	rs1480380-T	0.0877	4E-39		3.05	[NR]	Illumina [242824]	N
617	chr6_mcf_hap5	4251578	4251579	rs73396800	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	6p21.32	NR	rs73396800-G	NR	4E-16		1.1904762	[NR]	Illumina [7158791] (imputed)	N
617	chr6_mcf_hap5	4252703	4252704	rs16871226	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	NR	rs16871226-G	0.0244821228239845	2E-6	(IGP67)	0.5182	[0.3-0.73] unit increase	Illumina [~ 2500000] (imputed)	N
617	chr6_mcf_hap5	4255311	4255312	rs12153970	26584805	Dorajoo R	2015-11-19	Genes Nutr	A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.	Plasma omega-3 polyunsaturated fatty acid levels (docosahexaenoic acid)	717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls	NA	6p21.32	NR	rs12153970-G	0.9496	4E-6		0.2241	[0.13-0.32] unit increase	Illumina [up to 1980188] (imputed)	N
617	chr6_mcf_hap5	4256430	4256431	rs146693865	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.32	NR	rs146693865-G	0.01045	3E-9	(FHL1)	0.008308	NR unit increase	Illumina [1671387] (imputed)	N
617	chr6_mcf_hap5	4256430	4256431	rs146693865	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.32	NR	rs146693865-G	0.01045	3E-10	(TAGLN)	0.4341	NR unit increase	Illumina [1671387] (imputed)	N
617	chr6_mcf_hap5	4256430	4256431	rs146693865	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.32	NR	rs146693865-G	0.01045	2E-8	(CNN2)	0.01914	NR unit increase	Illumina [1671387] (imputed)	N
617	chr6_mcf_hap5	4259314	4259315	rs9378127	30552173	Aterido A	2018-12-14	Ann Rheum Dis	Genetic variation at the glycosaminoglycan metabolism pathway contributes to the risk of psoriatic arthritis but not psoriasis.	Psoriatic arthritis	744 Spanish ancestry cases, 1,454 Spanish ancestry controls	1,430 cases, 1,417 controls	6p21.32	NR	rs9378127-?	NR	4E-7		5.07	[NR] z-score increase	Illumina [1387382] (imputed)	N
617	chr6_mcf_hap5	4261440	4261441	rs209474	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.32		rs209474-A	0.623	4E-15				Affymetrix [10369434] (imputed)	N
617	chr6_mcf_hap5	4261440	4261441	rs209474	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	6p21.32	HLA-DMA	rs209474-G	0.377123	1E-12		0.016615335	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
617	chr6_mcf_hap5	4261440	4261441	rs209474	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	6p21.32	HLA-DMA	rs209474-G	0.377106	6E-15		0.018046945	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
617	chr6_mcf_hap5	4261440	4261441	rs209474	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	6p21.32	NR	rs209474-A	0.624456	7E-9		0.0127924	[0.0085-0.0171] unit decrease	NR [NR]	N
617	chr6_mcf_hap5	4261440	4261441	rs209474	29121268	Amare AT	2017-11-09	JAMA Psychiatry	Association of Polygenic Score for Schizophrenia and HLA Antigen and Inflammation Genes With Response to Lithium in Bipolar Affective Disorder: A Genome-Wide Association Study.	Bipolar disorder lithium response (continuous) or schizophrenia	2,366 European ancestry lithium treated bipolar disorder cases, 220 Asian ancestry lithium treated bipolar disorder cases, 36,989 schizophrenia cases, controls (see Ripke et al 2014 PMID:25056061)	NA	6p21.32	HLA, DMA	rs209474-A		2E-8				NR [NR] (imputed)	N
617	chr6_mcf_hap5	4262555	4262556	rs580962	35215271	Almandil NB	2022-01-27	Pharmaceuticals (Basel)	Integration of Transcriptome and Exome Genotyping Identifies Significant Variants with Autism Spectrum Disorder.	Autism spectrum disorder	70 Arab ancestry cases, 132 Arab ancestry controls	NA	6p21.32	NA	rs580962-G	0.5852	6E-6		0.3383	[0.2105-0.5436]	Illumina [243345]	N
617	chr6_mcf_hap5	4265173	4265174	rs209476	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.32		rs209476-G	0.683	9E-16				Affymetrix [10369434] (imputed)	N
617	chr6_mcf_hap5	4265848	4265849	rs9276931	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	6p21.32	HLA-DMA	rs9276931-A	0.8852	5E-23		0.0292	[0.023-0.035] unit decrease	Affymetrix [18391927] (imputed)	N
617	chr6_mcf_hap5	4272012	4272013	rs115249787	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.32	NR	rs115249787-A	0.01045	3E-9	(FHL1)	0.008308	NR unit increase	Illumina [1671387] (imputed)	N
617	chr6_mcf_hap5	4272012	4272013	rs115249787	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.32	NR	rs115249787-A	0.01045	3E-10	(TAGLN)	0.4341	NR unit increase	Illumina [1671387] (imputed)	N
617	chr6_mcf_hap5	4272012	4272013	rs115249787	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.32	NR	rs115249787-A	0.01045	2E-8	(CNN2)	0.01914	NR unit increase	Illumina [1671387] (imputed)	N
617	chr6_mcf_hap5	4282396	4282397	rs3097644	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p21.32	BRD2	rs3097644-G		2E-8		0.02	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
617	chr6_mcf_hap5	4282565	4282568	rs3918142	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p21.32	NR	rs3918142-?	NR	4E-7		0.117	[0.072-0.162] unit decrease	Illumina [at least 560000] (imputed)	N
617	chr6_mcf_hap5	4282895	4282896	rs34530779	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.32	NR	rs34530779-A	0.01045	3E-9	(FHL1)	0.008308	NR unit increase	Illumina [1671387] (imputed)	N
617	chr6_mcf_hap5	4282895	4282896	rs34530779	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.32	NR	rs34530779-A	0.01045	3E-10	(TAGLN)	0.4341	NR unit increase	Illumina [1671387] (imputed)	N
617	chr6_mcf_hap5	4282895	4282896	rs34530779	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.32	NR	rs34530779-A	0.01045	2E-8	(CNN2)	0.01914	NR unit increase	Illumina [1671387] (imputed)	N
617	chr6_mcf_hap5	4283188	4283189	rs76088152	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p21.32	NR	rs76088152-?	NR	8E-9		0.2377	[0.16-0.32] unit decrease	Illumina [at least 560000] (imputed)	N
617	chr6_mcf_hap5	4303572	4303573	rs35520555	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.32		rs35520555-A	0.886	3E-8				Affymetrix [10369434] (imputed)	N
617	chr6_mcf_hap5	4309266	4309267	rs3128935	24024966	Teumer A	2013-08-14	J Clin Periodontol	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (CDC/AAP)	up to 3,915 European ancestry individuals	NA	6p21.32	HLA-DOA	rs3128935-T	0.97	9E-6	(Age 20-60 years)	2.28	[1.59-3.28]	Affymetrix, Illumina [up to 17585496] (imputed)	N
617	chr6_mcf_hap5	4310461	4310462	rs9276975	25758996	Pirastu N	2015-03-11	Eur J Hum Genet	Genome-wide association analysis on five isolated populations identifies variants of the HLA-DOA gene associated with white wine liking.	White wine liking	381 Carlantino (founder/genetic isolated) individuals, 744 Friuli Venezia Giulia (founder/genetic isolated) individuals, 1,115 Val Borbera (founder/genetic isolated) individuals	1,261 Erasmus Rucphen (founder/genetic isolated) individuals, 335 Silk Road individuals	6p21.32	HLA-DOA	rs9276975-T	0.15	2E-8		0.0539	[NR] unit increase	Illumina [9969492] (imputed)	N
617	chr6_mcf_hap5	4310461	4310462	rs9276975	25758996	Pirastu N	2015-03-11	Eur J Hum Genet	Genome-wide association analysis on five isolated populations identifies variants of the HLA-DOA gene associated with white wine liking.	Red wine liking	398 Carlantino (founder/genetic isolated) individuals, 751 Friuli Venezia Giulia (founder/genetic isolated) individuals, 1,122 Val Borbera (founder/genetic isolated) individuals	1,246 Erasmus Rucphen (founder/genetic isolated) individuals, 353 Silk Road individuals	6p21.32	HLA-DOA	rs9276975-T	0.15	8E-6		0.0419	[NR] unit increase	Illumina [6967159] (imputed)	N
617	chr6_mcf_hap5	4311796	4311797	rs378352	25802187	Jiang DK	2015-04-28	Hepatology	Genetic variants in five novel loci including CFB and CD40 predispose to chronic hepatitis B.	Chronic hepatitis B infection	2,514 Chinese ancestry cases, 1,130 Chinese ancestry controls	6,600 Chinese ancestry cases, 8,127 Chinese ancestry controls	6p21.32	HLA-DOA	rs378352-T	0.39	1E-23		1.26	[1.20-1.31]	Illumina [3680900] (imputed)	N
617	chr6_mcf_hap5	4311876	4311877	rs399604	22139419	Gieger C	2011-11-30	Nature	New gene functions in megakaryopoiesis and platelet formation.	Platelet count	38,891 European ancestry individuals, 1,661 Val Borbera (founder/genetic isolate) individuals, 521 Carlantino (founder/genetic isolate) individuals, 1,198 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,213 South Tyrolean (founder/genetic isolate) individuals, 890 Sorbian (founder/genetic isolate) individuals, 4,292 Sardinian (founder/genetic isolate) individuals	Up to 16,949 European ancestry individuals, 854 Cliento (founder/genetic isolate) individuals, 1,035 Talana (founder/genetic isolate) individuals	6p21.32	HLA-DOA	rs399604-C	NR	1E-10		2.346	[1.63-3.06] 10^9/l increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
617	chr6_mcf_hap5	4312373	4312374	rs2267647	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.32		rs2267647-A	0.331	4E-13				Affymetrix [10369434] (imputed)	N
617	chr6_mcf_hap5	4314282	4314283	rs381218	32534018	Liu X	2020-06-10	Brain Behav Immun	Genetic factors underlying the bidirectional relationship between autoimmune and mental disorders - findings from a Danish population-based study.	Autoimmune traits	1,383 Danish ancestry cases, 62,656 Danish ancestry controls	NA	6p21.32	NR	rs381218-T	0.29	1E-10		1.31	[1.21-1.42]	NR [7721839] (imputed)	N
617	chr6_mcf_hap5	4320610	4320611	rs11964504	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	6p21.32	NR	rs11964504-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
618	chr6_mcf_hap5	4325557	4325558	rs9296068	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	6p21.32	HLA-DOA	rs9296068-T	0.65	1E-8		1.05	[1.03-1.07]	Illumina [20370935] (imputed)	N
618	chr6_mcf_hap5	4326384	4326385	rs56042736	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	133,321 East Asian ancestry individuals	NA	6p21.32		rs56042736-G	0.049558	3E-17		0.0728205	[0.056-0.09] unit decrease	Illumina [13477433] (imputed)	N
618	chr6_mcf_hap5	4342296	4342297	rs150480104	32141793	Garman L	2020-03-06	Ocul Immunol Inflamm	Genome-Wide Association Study of Ocular Sarcoidosis Confirms HLA Associations and Implicates Barrier Function and Autoimmunity in African Americans.	Ocular sarcoidosis	260 African American cases, 1,551 African American controls	NA	6p21.32	NR	rs150480104-A	NR	8E-6		3.855	[2.13-6.98]	Illumina [13976150] (imputed)	N
618	chr6_mcf_hap5	4346185	4346186	rs78331658	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Measles	38,219 European ancestry cases, 47,279 European ancestry controls	NA	6p21.32	NR	rs78331658-?	NR	1E-7		1.7845	[1.12-2.45] unit increase	Illumina [at least 560000] (imputed)	N
618	chr6_mcf_hap5	4355825	4355826	rs9296069	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.32		rs9296069-C	0.749	5E-33				Affymetrix [10369434] (imputed)	N
618	chr6_mcf_hap5	4357220	4357221	rs3130582	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p21.32	HLA-DPA1	rs3130582-T	0.202102	3E-8	(-24 ms)	0.0369729	[0.023-0.051] unit increase	Affymetrix [10000000] (imputed)	N
618	chr6_mcf_hap5	4360018	4360019	rs9277176	29534301	Nishida N	2018-03-13	Hepatology	Key HLA-DRB1-DQB1 haplotypes and role of the BTNL2 gene for response to a hepatitis B vaccine.	Response to hepatitis B vaccine	107 Japanese ancestry low responder individuals, 351 Japanese ancestry intermediate responder individuals, 735 Japanese ancestry high responder individuals	NA	6p21.32	HLA-DPA1	rs9277176-?		1E-7		0.219	unit decrease	Affymetrix [427664]	N
618	chr6_mcf_hap5	4362822	4362823	rs6457709	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6p21.32		rs6457709-?	NR	2E-6		0.94528	[0.92-0.97]	NR [685523]	N
618	chr6_mcf_hap5	4362822	4362823	rs6457709	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Hepatitis B	1,425 European ancestry cases, 218,180 European ancestry controls	NA	6p21.32	NR	rs6457709-?	NR	8E-6		0.1819	[0.1-0.26] unit increase	Illumina [at least 560000] (imputed)	N
618	chr6_mcf_hap5	4362979	4362980	rs422544	32771030	Tangtanatakul P	2020-08-08	Arthritis Res Ther	Meta-analysis of genome-wide association study identifies FBN2 as a novel locus associated with systemic lupus erythematosus in Thai population.	Systemic lupus erythematosus	487 Thai cases, 1,606 Thai controls	405 Thai cases, 1,590 Thai controls	6p21.32	HLA-DOA, HLA-DPA1	rs422544-C	0.15	5E-8		0.6232	[NR]	Illumina [421909] (imputed)	N
618	chr6_mcf_hap5	4365508	4365509	rs9277332	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Keratinocyte cancer (MTAG)	at least 18,538 European ancestry cases, at least 340,302 European ancestry controls	NA	6p21.32	HLA-DPA1	rs9277332-G	0.744531	2E-9		1.06	[1.04-1.08]	Affymetrix [7600000] (imputed)	N
618	chr6_mcf_hap5	4365587	4365588	rs588997	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	6p21.32	NR	rs588997-A	NR	4E-6	(female)	0.1185	[0.068-0.169] unit decrease	Illumina [11133794] (imputed)	N
618	chr6_mcf_hap5	4366308	4366309	rs6457710	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	6p21.32	HLA-DPA1	rs6457710-G	0.268971	2E-11		0.017609773	[0.012-0.023] unit increase	Affymetrix [93095623] (imputed)	N
618	chr6_mcf_hap5	4368484	4368485	rs35449774	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.32	NR	rs35449774-?	NR	3E-11				Affymetrix [~ 8270000] (imputed)	N
618	chr6_mcf_hap5	4368484	4368485	rs35449774	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs35449774-?	NR	2E-16				Affymetrix [~ 8270000] (imputed)	N
618	chr6_mcf_hap5	4368484	4368485	rs35449774	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	6p21.32	HLA-DPA1, HLA-DPB1, HLA-DPB2	rs35449774-T	0.142188	7E-11		1.0714098	[1.05-1.09]	Affymetrix [8274727] (imputed)	N
618	chr6_mcf_hap5	4369737	4369738	rs1042901	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	6p21.32	HLA-DPA1	rs1042901-C	0.119144	1E-14		0.029356208	[0.022-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
618	chr6_mcf_hap5	4369894	4369895	rs3077	33736632	Zeng Z	2021-03-18	BMC Med Genomics	Genome-wide association study identifies new loci associated with risk of HBV infection and disease progression.	Persistent hepatitis B virus infection	587 Chinese ancestry persistent cases, 275 Chinese ancestry clearance controls	NA	6p21.32	HLA-DPA1	rs3077-A	0.4145	7E-9		0.5007	NR	Affymetrix [607153]	N
618	chr6_mcf_hap5	4369894	4369895	rs3077	25802187	Jiang DK	2015-04-28	Hepatology	Genetic variants in five novel loci including CFB and CD40 predispose to chronic hepatitis B.	Chronic hepatitis B infection	2,514 Chinese ancestry cases, 1,130 Chinese ancestry controls	6,600 Chinese ancestry cases, 8,127 Chinese ancestry controls	6p21.32	HLA-DPA1	rs3077-A	0.66	1E-53		1.45	[1.39-1.52]	Illumina [3680900] (imputed)	N
618	chr6_mcf_hap5	4369894	4369895	rs3077	23760081	Kim YJ	2013-06-10	Hum Mol Genet	A genome-wide association study identified new variants associated with the risk of chronic hepatitis B.	Chronic hepatitis B infection	400 Korean ancestry cases, 1,000 Korean ancestry controls	971 Korean ancestry cases, 1,938 Korean ancestry controls	6p21.32	HLA-DP	rs3077-?	NR	5E-39		1.89	[1.69-2.08]	Illumina [719265]	N
618	chr6_mcf_hap5	4369894	4369895	rs3077	22737229	Nishida N	2012-06-21	PLoS One	Genome-wide association study confirming association of HLA-DP with protection against chronic hepatitis B and viral clearance in Japanese and Korean.	Hepatitis B (viral clearance)	181 East Asian ancestry HBV carriers, 184 East Asian ancestry controls, 185 East Asian ancestry spontaneously HBV-resolved individuals	Up to 8,045 East Asian ancestry HBV carriers, up to 9,003 East Asian ancestry controls, up to 3,995 East Asian ancestry spontaneously HBV-resolved individuals	6p21.32	HLA-DPA1	rs3077-C	0.60	4E-45	(Protective effects against CHB)	1.82	[1.67-1.96]	Affymetrix [597789]	N
618	chr6_mcf_hap5	4369894	4369895	rs3077	22737229	Nishida N	2012-06-21	PLoS One	Genome-wide association study confirming association of HLA-DP with protection against chronic hepatitis B and viral clearance in Japanese and Korean.	Hepatitis B (viral clearance)	181 East Asian ancestry HBV carriers, 184 East Asian ancestry controls, 185 East Asian ancestry spontaneously HBV-resolved individuals	Up to 8,045 East Asian ancestry HBV carriers, up to 9,003 East Asian ancestry controls, up to 3,995 East Asian ancestry spontaneously HBV-resolved individuals	6p21.32	HLA-DPA1	rs3077-C	0.60	1E-9	(Clearance of HBV)	1.67	[1.43-2.0]	Affymetrix [597789]	N
618	chr6_mcf_hap5	4369894	4369895	rs3077	21750111	Mbarek H	2011-07-12	Hum Mol Genet	A genome-wide association study of chronic hepatitis B identified novel risk locus in a Japanese population.	Hepatitis B	458 Japanese ancestry cases, 2,056 Japanese ancestry controls	2,209 Japanese ancestry cases, 4,440 Japanese ancestry controls	6p21.32	HLA-DPA1	rs3077-G	0.60	2E-61		1.87	[1.73-2.01]	Illumina [423627]	N
618	chr6_mcf_hap5	4370292	4370293	rs79341334	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	6p21.32	NR	rs79341334-?	NR	4E-9	(MIC-A)	1.11932	[0.75-1.49] unit increase	Illumina [11901634] (imputed)	N
618	chr6_mcf_hap5	4370582	4370583	rs73739621	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (multivariate analysis)	477,968 European ancestry individuals	NA	6p21.32	HLA, DPA1	rs73739621-C	0.096	2E-10		0.05	[0.034-0.066] unit decrease	NR [NR] (imputed)	N
618	chr6_mcf_hap5	4370582	4370583	rs73739621	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (age of onset)	117,130 European ancestry individuals	NA	6p21.32	HLA-DPA1	rs73739621-C	0.096	4E-11		0.051	[0.035-0.067] unit decrease	NR [7647814] (imputed)	N
618	chr6_mcf_hap5	4370686	4370687	rs2301227	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	6p21.32	NR	rs2301227-A	NR	5E-6	(female)	0.1072	[0.061-0.153] unit decrease	Illumina [11133794] (imputed)	N
618	chr6_mcf_hap5	4370696	4370697	rs111789468	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	6p21.32	HLA-DPA1	rs111789468-?	NR	2E-13		1.092	[1.07-1.12]	Affymetrix [9000000] (imputed)	N
618	chr6_mcf_hap5	4370696	4370697	rs111789468	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	6p21.32	HLA-DPA1	rs111789468-T	NR	4E-6		1.082	[1.05-1.12]	Affymetrix [9000000] (imputed)	N
618	chr6_mcf_hap5	4371449	4371450	rs34596699	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	Systemic lupus erythematosus	1,639 East Asian ancestry cases, 2,410 East Asian ancestry controls	NA			rs34596699-T	NR	2E-8		0.2177	[0.14-0.29] unit increase	Illumina [NR] (imputed)	N
618	chr6_mcf_hap5	4372187	4372188	rs74292032	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6p21.32	HLA-DPA1	rs74292032-G	0.014974	1E-15		0.07435001	[0.056-0.093] unit decrease	Affymetrix [93095623] (imputed)	N
618	chr6_mcf_hap5	4376497	4376498	rs9277341	28029757	Merkel PA	2016-12-28	Arthritis Rheumatol	Identification of Functional and Expression Polymorphisms Associated With Risk for Antineutrophil Cytoplasmic Autoantibody-Associated Vasculitis.	Antineutrophil cytoplasmic antibody-associated vasculitis	1,015 European ancestry granulomatosis with polyangiitis cases, 206 European ancestry microscopic polyangiitis cases, 3,258 European ancestry controls.	541 European ancestry granulomatosis with polyangiitis cases, 30 European ancestry microscopic polyangiitis cases, 1,465 European ancestry controls.	6p21.32	HLA-DPA1	rs9277341-T	0.70	6E-71		2.44	2.21-2.69	Affymetrix [at least 333035] (imputed)	N
618	chr6_mcf_hap5	4376676	4376677	rs9277342	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	6p21.32	HLA-DPA1	rs9277342-T	0.21017	8E-10		0.017251292	[0.012-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
618	chr6_mcf_hap5	4376970	4376971	rs4345439	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Graves' disease	2,809 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	6p21.32		rs4345439-T	0.47048229	2E-67		0.48648387	[0.43-0.54] unit increase	Illumina [13429311] (imputed)	N
618	chr6_mcf_hap5	4377945	4377946	rs9357156	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Graves' disease	1,678 European ancestry cases, 456,942 European ancestry controls, 2,809 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	6p21.32		rs9357156-C	NR	1E-68		0.4396	[0.39-0.49] unit increase	Affymetrix, Illumina [25841587] (imputed)	N
618	chr6_mcf_hap5	4378588	4378589	rs2856830	30527956	Rhodes CJ	2018-12-05	Lancet Respir Med	Genetic determinants of risk in pulmonary arterial hypertension: international genome-wide association studies and meta-analysis.	Pulmonary arterial hypertension	2,085 European ancestry cases, 9,659 European ancestry controls	NA	6p21.32	HLA-DPA1, HLA-DPB1	rs2856830-C	0.12	8E-20		1.56	[1.42-1.71]	Illumina [~ 7727590] (imputed)	N
618	chr6_mcf_hap5	4379734	4379735	rs987870	21814517	Noguchi E	2011-07-21	PLoS Genet	Genome-wide association study identifies HLA-DP as a susceptibility gene for pediatric asthma in Asian populations.	Asthma	938 Japanese ancestry cases, 2,376 Japanese ancestry controls	1653 East Asian ancestry cases, 1453 East Asian ancestry controls	6p21.32	HLA, DPB1	rs987870-C	0.14	2E-10		1.4	[1.26-1.55]	Illumina [450326]	N
618	chr6_mcf_hap5	4379734	4379735	rs987870	21779181	Gorlova O	2011-07-14	PLoS Genet	Identification of novel genetic markers associated with clinical phenotypes of systemic sclerosis through a genome-wide association strategy.	Systemic sclerosis	2,296 European ancestry cases, 5,172 European ancestry controls	3,175 European ancestry cases, 4,210 European ancestry controls	6p21.32	HLA-DPA1, HLA-DPB1	rs987870-?	0.15	2E-20	(ATA positive)	2.09	[1.78-2.45]	Illumina [NR] (imputed)	N
618	chr6_mcf_hap5	4380869	4380870	rs115910061	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs115910061-T	0.059	5E-12		0.721	[0.63-0.81]	Illumina [11270530] (imputed)	N
618	chr6_mcf_hap5	4381847	4381848	rs6415133	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p21.32	NR	rs6415133-?	NR	6E-16		0.0994	[0.075-0.124] unit decrease	Illumina [at least 560000] (imputed)	N
618	chr6_mcf_hap5	4382115	4382116	rs2213309	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	6p21.32	NR	rs2213309-T	0.55	8E-7	(female)	0.1155	[0.07-0.161] unit increase	Illumina [11133794] (imputed)	N
618	chr6_mcf_hap5	4382360	4382361	rs2856816	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.32		rs2856816-T	0.908	5E-23				Affymetrix [10369434] (imputed)	N
618	chr6_mcf_hap5	4382360	4382361	rs2856816	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	6p21.32	HLA-DPB1, HLA-DPA1	rs2856816-C	0.092	2E-17		0.0523189	[0.04-0.064] unit decrease	Affymetrix [~ 2500000] (imputed)	N
618	chr6_mcf_hap5	4382360	4382361	rs2856816	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	6p21.32	HLA-DPB1, HLA-DPA1	rs2856816-C	0.092	7E-15		0.04810228	[0.036-0.06] unit decrease	Affymetrix [~ 2500000] (imputed)	N
618	chr6_mcf_hap5	4382558	4382559	rs7750458	27153935	Zhang CE	2016-05-06	J Dermatol	Variation at HLA-DPB1 is associated with dermatomyositis in Chinese population.	Dermatomyositis	127 Han Chinese ancestry case, 1,566 Han Chinese ancestry controls	NA	6p21.32	HLA-DPB1, HLA-DMB	rs7750458-A	0.09	1E-9		2.5	[1.80-3.44]	Illumina [812602]	N
618	chr6_mcf_hap5	4382559	4382560	rs56934772	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	6p21.32	HLA-DPB1	rs56934772-T	NR	5E-8		0.259632	[0.17-0.35] unit increase	Illumina [at least 950000] (imputed)	N
618	chr6_mcf_hap5	4382826	4382827	rs3135022	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	6p21.32	NR	rs3135022-A	NR	3E-6	(female)	0.1098	[0.064-0.156] unit decrease	Illumina [11133794] (imputed)	N
618	chr6_mcf_hap5	4383586	4383587	rs2021408	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.32		rs2021408-T	0.833	1E-17				Affymetrix [10369434] (imputed)	N
618	chr6_mcf_hap5	4383586	4383587	rs2021408	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.32		rs2021408-C	0.840557	3E-7		1.0296161	[1.02-1.04]	Affymetrix, Illumina [9851866] (imputed)	N
618	chr6_mcf_hap5	4383602	4383603	rs2856821	34450027	Boer CG	2021-08-24	Cell	Deciphering osteoarthritis genetics across 826,690 individuals from 9 populations.	Osteoarthritis of the hip or knee	88,842 European ancestry cases, 397,208 European ancestry controls, 899 Japanese ancestry cases, 3,396 Japanese ancestry controls	NA	6p21.32		rs2856821-T	0.7896	6E-9		1.0471791	[1.031089783-1.063519526]	Affymetrix, Illumina [NR] (imputed)	N
618	chr6_mcf_hap5	4383602	4383603	rs2856821	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Osteoarthritis	77,052 European ancestry cases, 378,169 European ancestry controls	NA	6p21.32	NR	rs2856821-T	0.79	1E-9		1.04	[1.03-1.06]	Affymetrix, Illumina [up to 17000000] (imputed)	N
618	chr6_mcf_hap5	4383612	4383613	rs3097670	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	6p21.32	HLA-DPA1	rs3097670-G	0.88	8E-12		1.064	[1.05-1.08]	Affymetrix, Illumina [8307659] (imputed)	N
618	chr6_mcf_hap5	4383891	4383892	rs1431403	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs1431403-T	0.39	1E-22		0.848	[0.81-0.88]	Illumina [11270530] (imputed)	N
618	chr6_mcf_hap5	4384326	4384327	rs3135024	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Aspartate aminotransferase levels	386,570 British ancestry individuals, 10,617 Asian or Asian British individuals, 7,426 Black or Black British individuals, 2,321 Chinese ancestry individuals	NA	6p21.32	HLA-DPB1	rs3135024-?	NR	8E-24		0.0034	[0.0028-0.004] unit increase	Affymetrix [21347608] (imputed)	N
618	chr6_mcf_hap5	4384326	4384327	rs3135024	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Alanine aminotransferase levels	387,859 British ancestry individuals, 10,635 Asian or Asian British individuals, 7,468 Black or Black British individuals, 2,338 Chinese ancestry individuals	NA	6p21.32	HLA-DPB1	rs3135024-?	NR	3E-10		0.0034	[0.0024-0.0044] unit increase	Affymetrix [21347608] (imputed)	N
618	chr6_mcf_hap5	4384326	4384327	rs3135024	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DPA1, HLA-DPB1, RPL32P1	rs3135024-C	NR	2E-8		0.0184048	[0.012-0.025] unit decrease	Affymetrix [321016] (imputed)	N
618	chr6_mcf_hap5	4384472	4384473	rs3097671	34197731	Li Q	2021-06-23	Am J Hum Genet	Whole-exome sequencing reveals common and rare variants in immunologic and neurological genes implicated in achalasia.	Idiopathic achalasia	280 Chinese Han ancestry cases, 1,121 Chinese Han ancestry controls	NA	6p21.32		rs3097671-C	0.102	3E-7		2.29	[1.67-3.15]	Illumina [476650] (imputed)	N
618	chr6_mcf_hap5	4384962	4384963	rs3130169	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs3130169-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
618	chr6_mcf_hap5	4385320	4385321	rs12722013	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	HLA-DPB1	rs12722013-C	0.049	1E-15	(C-C motif chemokine 21, CCL21.2516.57.3)	0.45	[0.33-0.57] unit increase	Affymetrix [10572788] (imputed)	N
618	chr6_mcf_hap5	4385326	4385327	rs1126511	34197731	Li Q	2021-06-23	Am J Hum Genet	Whole-exome sequencing reveals common and rare variants in immunologic and neurological genes implicated in achalasia.	Idiopathic achalasia	100 Chinese Han ancestry cases, 313 Chinese Han ancestry controls	230 Chinese Han ancestry cases, 1,760 Chinese Han ancestry controls	6p21.32		rs1126511-T	0.181	2E-9		1.83		Illumina [192329]	N
618	chr6_mcf_hap5	4385398	4385399	rs9277348	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hypothyroidism	1,114 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	6p21.32		rs9277348-C	0.428105722	8E-16		0.3692923	[0.28-0.46] unit increase	Illumina [13429045] (imputed)	N
618	chr6_mcf_hap5	4385466	4385467	rs1042133	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	6p21.32	HLA-DPB1	rs1042133-C	0.15836	8E-32		0.036145743	[0.03-0.042] unit increase	Affymetrix [93095623] (imputed)	N
618	chr6_mcf_hap5	4385466	4385467	rs1042133	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	6p21.32	HLA-DPB1	rs1042133-C	0.1567	3E-12		0.03465061	[0.025-0.044] unit increase	Affymetrix [~ 2500000] (imputed)	N
618	chr6_mcf_hap5	4385521	4385522	rs1042151	32004448	Savage SA	2020-01-30	Am J Hum Genet	Genome-wide Association Study Identifies HLA-DPB1 as a Significant Risk Factor for Severe Aplastic Anemia.	Severe aplastic anemia	359 European ancestry cases, 1,396 European ancestry controls	175 European ancestry cases, 1,059 European ancestry controls	6p21.32	HLA-DPB1	rs1042151-?	NR	2E-13		1.75	[1.50-2.03]	Illumina [688067]	N
618	chr6_mcf_hap5	4385521	4385522	rs1042151	23180272	Park BL	2012-11-21	Hum Genet	Genome-wide association study of aspirin-exacerbated respiratory disease in a Korean population.	Aspirin exacerbated respiratory disease in asthmatics	117 Korean ancestry cases, 685 Korean ancestry controls	142 Korean ancestry cases, 996 Korean ancestry controls	6p21.32	HLA-DPB1	rs1042151-G	0.083	5E-7		2.4	[1.68-3.42]	Illumina [430486]	N
618	chr6_mcf_hap5	4385549	4385549	rs141530233	28029757	Merkel PA	2016-12-28	Arthritis Rheumatol	Identification of Functional and Expression Polymorphisms Associated With Risk for Antineutrophil Cytoplasmic Autoantibody-Associated Vasculitis.	Antineutrophil cytoplasmic antibody-associated vasculitis	1,015 European ancestry granulomatosis with polyangiitis cases, 206 European ancestry microscopic polyangiitis cases, 3,258 European ancestry controls.	541 European ancestry granulomatosis with polyangiitis cases, 30 European ancestry microscopic polyangiitis cases, 1,465 European ancestry controls.	6p21.32	HLA-DPB1	rs141530233-?	0.7	1E-89		2.99	[2.69-3.33]	Affymetrix [at least 333035] (imputed)	N
618	chr6_mcf_hap5	4385554	4385555	rs9277356	31243853	Chung S	2019-06-27	J Viral Hepat	GWAS identifying HLA-DPB1 gene variants associated with responsiveness to hepatitis B virus vaccination in Koreans: Independent association of HLA-DPB1*04:02 possessing rs1042169 G - rs9277355 C - rs9277356 A.	Response to hepatitis B vaccine	1,760 Korean ancestry non-responder adults, 5,107 Korean ancestry responder adults	2,327 Korean ancestry adults, 49 Korean ancestry non-responder infants, 234 Korean ancestry responder infants	6p21.32	HLA-DPB1	rs9277356-A	0.4716	7E-31	(Adults)	1.474164	[1.38-1.574]	Affymetrix [345072]	N
618	chr6_mcf_hap5	4385781	4385782	rs7770370	32573827	Huang YH	2020-06-23	Aliment Pharmacol Ther	Large-scale genome-wide association study identifies HLA class II variants associated with chronic HBV infection: a study from Taiwan Biobank.	Chronic hepatitis B infection	1,810 East Asian cases, 9,002 East Asian seropositive controls	648 East Asian cases, 3,190 East Asian seropositive controls	6p21.32	NR	rs7770370-G	0.5739	3E-35		1.6393442	[1.52-1.79]	Affymetrix [583383]	N
618	chr6_mcf_hap5	4386134	4386135	rs2856827	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip	15 Asian ancestry cases, 13 European ancestry cases, 15 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	6p21.32	NR	rs2856827-?	NR	4E-6		3.87	[2.88-5.2]	Illumina [539000] (imputed)	N
618	chr6_mcf_hap5	4386523	4386524	rs9501251	28425483	Qiu F	2017-04-20	Nat Commun	A genome-wide association study identifies six novel risk loci for primary biliary cholangitis.	Primary biliary cholangitis	1,122 Han Chinese ancestry cases, 4,036 Han Chinese ancestry controls	907 Han Chinese ancestry cases, 2,127 Han Chinese ancestry controls	6p21.32	HLA-DPB1	rs9501251-G	0.044	2E-22		2.01	[1.76-2.32]	Illumina [776516]	N
618	chr6_mcf_hap5	4386586	4386587	rs7772134	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.32		rs7772134-G	0.899	5E-45				Affymetrix [10369434] (imputed)	N
618	chr6_mcf_hap5	4387139	4387140	rs9277378	27595289	Goyal RK	2016-09-05	Bone Marrow Transplant	Novel HLA-DP region susceptibility loci associated with severe acute GvHD.	Acute graft versus host disease in bone marrow transplantation (recipient effect)	291 European ancestry recipients with acute graft versus host disease, 288 European ancestry recipients without acute graft versus host disease	NA	6p21.32	HLA-DPB1	rs9277378-?		2E-9				Affymetrix [905761]	N
618	chr6_mcf_hap5	4387139	4387140	rs9277378	27470079	Li Z	2016-07-25	Lancet Oncol	Genetic risk of extranodal natural killer T-cell lymphoma: a genome-wide association study.	Extranodal natural killer T-cell lymphoma (nasal type)	189 East Asian ancestry cases, 957 East Asian ancestry controls	514 East Asian ancestry cases, 5,822 East Asian ancestry controls	6p21.32	HLA-DPB1	rs9277378-A	0.29	4E-19		1.84	[1.61-2.11]	Illumina [477644] (imputed)	N
618	chr6_mcf_hap5	4388757	4388757	rs142975055	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic hepatitis B infection	145 European ancestry cases, 351,740 European ancestry controls, 2,234 East Asian ancestry cases, 169,588 East Asian ancestry controls	NA	6p21.32		rs142975055-GAAATA	NR	1E-44		0.4385	[0.38-0.5] unit increase	Affymetrix, Illumina [20457334] (imputed)	N
618	chr6_mcf_hap5	4390196	4390197	rs9277464	29534301	Nishida N	2018-03-13	Hepatology	Key HLA-DRB1-DQB1 haplotypes and role of the BTNL2 gene for response to a hepatitis B vaccine.	Response to hepatitis B vaccine	107 Japanese ancestry low responder individuals, 351 Japanese ancestry intermediate responder individuals, 735 Japanese ancestry high responder individuals	NA	6p21.32	HLA-DPB1	rs9277464-?		7E-11		0.175	unit decrease	Affymetrix [427664]	N
618	chr6_mcf_hap5	4391705	4391706	rs9277535	27244555	Li Y	2016-05-31	Nat Commun	Genome-wide association study identifies 8p21.3 associated with persistent hepatitis B virus infection among Chinese.	Persistent hepatitis B virus infection	1,251 Chinese ancestry persistently infected cases, 1,057 Chinese ancestry spontaneously recovered controls	3,905 Chinese ancestry persistently infected cases, 3,356 Chinese ancestry spontaneously recovered controls	6p21.32	HLA-DPB1	rs9277535-A		4E-6		1.45	[1.23-1.69]	Affymetrix, Illumina [up to 4494311] (imputed)	N
618	chr6_mcf_hap5	4391705	4391706	rs9277535	25802187	Jiang DK	2015-04-28	Hepatology	Genetic variants in five novel loci including CFB and CD40 predispose to chronic hepatitis B.	Chronic hepatitis B infection	2,514 Chinese ancestry cases, 1,130 Chinese ancestry controls	6,600 Chinese ancestry cases, 8,127 Chinese ancestry controls	6p21.32	HLA-DPB1	rs9277535-A	0.58	1E-70		1.52	[1.45-1.59]	Illumina [3680900] (imputed)	N
618	chr6_mcf_hap5	4391705	4391706	rs9277535	24940741	Chang SW	2014-06-18	PLoS One	A genome-wide association study on chronic HBV infection and its clinical progression in male Han-Taiwanese.	Chronic hepatitis B infection	321 Chinese ancestry cases, 304 Chinese ancestry controls	1,302 Chinese ancestry cases, 761 Chinese ancestry controls	6p21.32	HLA-DPB1	rs9277535-G	0.251	5E-14		1.59	[1.41-1.79]	Illumina [456262]	N
618	chr6_mcf_hap5	4391705	4391706	rs9277535	23760081	Kim YJ	2013-06-10	Hum Mol Genet	A genome-wide association study identified new variants associated with the risk of chronic hepatitis B.	Chronic hepatitis B infection	400 Korean ancestry cases, 1,000 Korean ancestry controls	971 Korean ancestry cases, 1,938 Korean ancestry controls	6p21.32	HLA-DP	rs9277535-?	NR	4E-40		1.89	[1.72-2.08]	Illumina [719265]	N
618	chr6_mcf_hap5	4391705	4391706	rs9277535	22737229	Nishida N	2012-06-21	PLoS One	Genome-wide association study confirming association of HLA-DP with protection against chronic hepatitis B and viral clearance in Japanese and Korean.	Hepatitis B (viral clearance)	181 East Asian ancestry HBV carriers, 184 East Asian ancestry controls, 185 East Asian ancestry spontaneously HBV-resolved individuals	Up to 8,045 East Asian ancestry HBV carriers, up to 9,003 East Asian ancestry controls, up to 3,995 East Asian ancestry spontaneously HBV-resolved individuals	6p21.32	HLA-DPB1	rs9277535-G	0.57	2E-21	(Protective effects against CHB)	1.64	[1.47-1.82]	Affymetrix [597789]	N
618	chr6_mcf_hap5	4391705	4391706	rs9277535	22737229	Nishida N	2012-06-21	PLoS One	Genome-wide association study confirming association of HLA-DP with protection against chronic hepatitis B and viral clearance in Japanese and Korean.	Hepatitis B (viral clearance)	181 East Asian ancestry HBV carriers, 184 East Asian ancestry controls, 185 East Asian ancestry spontaneously HBV-resolved individuals	Up to 8,045 East Asian ancestry HBV carriers, up to 9,003 East Asian ancestry controls, up to 3,995 East Asian ancestry spontaneously HBV-resolved individuals	6p21.32	HLA-DPB1	rs9277535-G	0.57	2E-17	(Clearance of HBV)	1.52	[1.37-1.67]	Affymetrix [597789]	N
618	chr6_mcf_hap5	4391705	4391706	rs9277535	21764829	Png E	2011-07-15	Hum Mol Genet	A genome-wide association study of hepatitis B vaccine response in an Indonesian population reveals multiple independent risk variants in the HLA region.	Hepatitis B vaccine response	1,683 Indonesian ancestry individuals	1,931 Indonesian ancestry individuals	6p21.32	HLA-DPB1	rs9277535-?	NR	3E-12		1.39	[1.23-1.59]	Illumina [455508]	N
618	chr6_mcf_hap5	4391705	4391706	rs9277535	21750111	Mbarek H	2011-07-12	Hum Mol Genet	A genome-wide association study of chronic hepatitis B identified novel risk locus in a Japanese population.	Hepatitis B	458 Japanese ancestry cases, 2,056 Japanese ancestry controls	2,209 Japanese ancestry cases, 4,440 Japanese ancestry controls	6p21.32	HLA-DPB1	rs9277535-G	0.57	3E-54		1.77	[1.65-1.91]	Illumina [423627]	N
618	chr6_mcf_hap5	4391705	4391706	rs9277535	19349983	Kamatani Y	2009-04-06	Nat Genet	A genome-wide association study identifies variants in the HLA-DP locus associated with chronic hepatitis B in Asians.	Hepatitis B	179 Japanese ancestry cases, 934 Japanese ancestry controls	1,599 Japanese ancestry cases, 2,821 Japanese ancestry controls, 308 Thai ancestry cases, 546 Thai ancestry controls	6p21.32	HLA-DPB1	rs9277535-G		6E-39		1.75	[1.61-1.92]	Illumina [499544]	N
618	chr6_mcf_hap5	4391942	4391943	rs9501255	28077804	Ben-Avraham D	2017-01-10	Aging (Albany NY)	The complex genetics of gait speed: genome-wide meta-analysis approach.	Gait speed in old age	31,478 European ancestry older adults	2,588 European ancestry older adults	6p21.32	HLA-DPB1	rs9501255-T	NR	3E-7		0.0244	[0.015-0.034] m/sec increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
618	chr6_mcf_hap5	4392091	4392092	rs9277542	33736632	Zeng Z	2021-03-18	BMC Med Genomics	Genome-wide association study identifies new loci associated with risk of HBV infection and disease progression.	Persistent hepatitis B virus infection	587 Chinese ancestry persistent cases, 275 Chinese ancestry clearance controls	NA	6p21.32	HLA-DPB1	rs9277542-T	0.5347	2E-8		0.5353	NR	Affymetrix [607153]	N
618	chr6_mcf_hap5	4392091	4392092	rs9277542	33736632	Zeng Z	2021-03-18	BMC Med Genomics	Genome-wide association study identifies new loci associated with risk of HBV infection and disease progression.	Hepatitis B	460 Chinese ancestry cases, 169 Chinese ancestry controls	NA	6p21.32	HLA-DPB1	rs9277542-?	NR	2E-9				Affymetrix [607153]	N
618	chr6_mcf_hap5	4392263	4392264	rs9277549	29534301	Nishida N	2018-03-13	Hepatology	Key HLA-DRB1-DQB1 haplotypes and role of the BTNL2 gene for response to a hepatitis B vaccine.	Response to hepatitis B vaccine	107 Japanese ancestry low responder individuals, 351 Japanese ancestry intermediate responder individuals, 735 Japanese ancestry high responder individuals	NA	6p21.32	HLA-DPB2	rs9277549-?		6E-11		0.175	unit decrease	Affymetrix [427664]	N
618	chr6_mcf_hap5	4392345	4392346	rs9277552	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Osteoarthritis of the hip or knee	39,427 European ancestry cases, 378,169 European ancestry controls	NA	6p21.32	NR	rs9277552-C	0.79	2E-10		1.06	[1.04-1.08]	Affymetrix, Illumina [up to 17000000] (imputed)	N
618	chr6_mcf_hap5	4392345	4392346	rs9277552	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Knee osteoarthritis	24,955 European ancestry cases, 378,169 European ancestry controls	NA	6p21.32	NR	rs9277552-C	0.79	2E-8		1.07	[1.04-1.09]	Affymetrix, Illumina [up to 17000000] (imputed)	N
618	chr6_mcf_hap5	4392382	4392383	rs9277554	28076899	Taylor KE	2017-01-11	Arthritis Rheumatol	Genome-Wide Association Analysis Reveals Genetic Heterogeneity of Sjogren's Syndrome According to Ancestry.	Sjogren's syndrome	460 Asian ancestry cases, 1125 Asian ancestry controls	NA	6p21.32	HLA-DPB1	rs9277554-?		3E-7		1.65	[1.37-2.00]	Illumina [302688]	N
618	chr6_mcf_hap5	4392382	4392383	rs9277554	23740775	Xie G	2013-09-01	Arthritis Rheum	Association of granulomatosis with polyangiitis (Wegener's) with HLA-DPB1*04 and SEMA6A gene variants: evidence from genome-wide analysis.	Wegener's granulomatosis	459 European ancestry cases, 1,503 European ancestry controls	291 European ancestry cases, 317 European ancestry controls	6p21.32	HLA-DOA, HSD17B8, RING1, COL11A2, RXRB, HLA-DPB1*04, HLA-DPB1, HLA-DPB2	rs9277554-C	0.708	2E-50		4.17	[3.33-5.00]	Illumina [287802]	N
618	chr6_mcf_hap5	4392449	4392450	rs9277555	24586183	Medici M	2014-02-27	PLoS Genet	Identification of novel genetic Loci associated with thyroid peroxidase antibodies and clinical thyroid disease.	Thyroid peroxidase antibody levels	12,353 European ancestry individuals	8,159 European ancestry individuals	6p21.32	NR	rs9277555-G		6E-7		0.0199	[0.010-0.030] unit increase	Affymetrix, Illumina [up to 3437411] (imputed)	N
618	chr6_mcf_hap5	4392509	4392512	rs148969528	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p21.32	HLA-DPB1, HLA-DPA2	rs148969528-A	0.178395	3E-15		0.022868847	[0.017-0.029] unit increase	Affymetrix [93095623] (imputed)	N
618	chr6_mcf_hap5	4392509	4392512	rs148969528	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	6p21.32	HLA-DPB1, HLA-DPA2	rs148969528-A	0.178377	1E-17		0.024778191	[0.019-0.03] unit increase	Affymetrix [93095623] (imputed)	N
618	chr6_mcf_hap5	4392941	4392942	rs3128967	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6p21.32	NR	rs3128967-T	0.90959	2E-12		1.0504202	[1.04-1.06]	Affymetrix [15688218] (imputed)	N
618	chr6_mcf_hap5	4393606	4393607	rs9277562	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic hepatitis B infection	2,234 East Asian ancestry cases, 169,588 East Asian ancestry controls	NA	6p21.32		rs9277562-T	0.575524651	5E-45		0.44033504	[0.38-0.5] unit increase	Illumina [13428705] (imputed)	N
618	chr6_mcf_hap5	4395718	4395719	rs2179920	27501781	Shiraishi K	2016-08-09	Nat Commun	Association of variations in HLA class II and other loci with susceptibility to EGFR-mutated lung adenocarcinoma.	EGFR mutation-positive lung adenocarcinoma	663 Japanese ancestry cases, 4,367 Japanese ancestry controls	2,510 Japanese ancestry cases, 10,791 Japanese ancestry controls	6p21.32	HLA-DPB1	rs2179920-A	0.165	5E-17		1.36	[1.27-1.47]	Illumina [NR] (imputed)	N
618	chr6_mcf_hap5	4396962	4396963	rs2281388	31050781	Zhao SX	2019-05-03	JAMA Netw Open	Assessment of Molecular Subtypes in Thyrotoxic Periodic Paralysis and Graves Disease Among Chinese Han Adults: A Population-Based Genome-Wide Association Study.	Thyrotoxic hypokalemic periodic paralysis and Graves disease	171 Han Chinese ancestry cases, 2,160 Han Chinese ancestry controls	362 Han Chinese ancestry cases, 1,089 Han Chinese ancestry controls	6p21.32	HLA-DPB1, COL11A2	rs2281388-?	0.33	2E-18		1.74	[1.54-1.98]	Illumina [2752055] (imputed)	N
618	chr6_mcf_hap5	4396962	4396963	rs2281388	21841780	Chu X	2011-08-14	Nat Genet	A genome-wide association study identifies two new risk loci for Graves' disease.	Graves' disease	1,468 Chinese ancestry cases, 1,490 Chinese ancestry controls	3,994 Chinese ancestry cases, 3,510 Chinese ancestry controls	6p21.32	HLA, DPB1	rs2281388-T	0.32	2E-65		1.64	[1.55-1.74]	Illumina [486049]	N
618	chr6_mcf_hap5	4397666	4397667	rs6928954	20639394	Kang TW	2010-07-16	Hum Mol Genet	Genome-wide association of serum bilirubin levels in Korean population.	Bilirubin levels	8,841 Korean ancestry individuals	1,096 Korean ancestry individuals	6p21.32	intergenic	rs6928954-?	0.023	1E-6		0.075	[NR] bilirubin level increase	Affymetrix [1227049] (imputed)	N
618	chr6_mcf_hap5	4397714	4397715	rs2295119	32912934	Li M	2020-09-10	J Am Soc Nephrol	Genome-Wide Meta-Analysis Identifies Three Novel Susceptibility Loci and Reveals Ethnic Heterogeneity of Genetic Susceptibility for IgA Nephropathy.	IgA nephropathy	2,628 Chinese ancestry cases, 11,563 Chinese ancestry controls	6,879 Han Chinese ancestry cases, 9,019 Han Chinese ancestry controls, 1,039 Italian ancestry cases, 1,289 Italian ancestry controls	6p21.32	DPA1.DPB2	rs2295119-T	0.22960427086396265	3E-14	(East Asian)	1.3605813	[1.25664462393162-1.47311444258073]	NR [3611808] (imputed)	N
618	chr6_mcf_hap5	4397714	4397715	rs2295119	29784950	Sawai H	2018-05-21	Sci Rep	Genome-wide association study identified new susceptible genetic variants in HLA class I region for hepatitis B virus-related hepatocellular carcinoma.	Hepatocellular carcinoma in hepatitis B infection	473 Japanese ancestry chronic hepatitis and hepatocellular carcinoma cases, 516 Japanese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma	153 Japanese ancestry chronic hepatitis and hepatocellular carcinoma cases, 614 Japanese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma, 94 Chinese ancestry chronic hepatitis and hepatocellular carcinoma cases, 187 Chinese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma, 185 Thai ancestry chronic hepatitis and hepatocellular carcinoma cases, 198 Thai ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma	6p21.32	HLA	rs2295119-?	NR	6E-7	(Japanese)	1.59	[1.32-1.89]	Affymetrix [447830]	N
618	chr6_mcf_hap5	4397714	4397715	rs2295119	29784950	Sawai H	2018-05-21	Sci Rep	Genome-wide association study identified new susceptible genetic variants in HLA class I region for hepatitis B virus-related hepatocellular carcinoma.	Hepatocellular carcinoma in hepatitis B infection	473 Japanese ancestry chronic hepatitis and hepatocellular carcinoma cases, 516 Japanese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma	153 Japanese ancestry chronic hepatitis and hepatocellular carcinoma cases, 614 Japanese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma, 94 Chinese ancestry chronic hepatitis and hepatocellular carcinoma cases, 187 Chinese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma, 185 Thai ancestry chronic hepatitis and hepatocellular carcinoma cases, 198 Thai ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma	6p21.32	HLA	rs2295119-?	NR	5E-7		1.5873016	[1.32-1.89] Japanese	Affymetrix [447830]	N
618	chr6_mcf_hap5	4398073	4398074	rs3130189	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.32		rs3130189-T	0.829	9E-13				Affymetrix [10369434] (imputed)	N
618	chr6_mcf_hap5	4406411	4406412	rs3117245	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs3117245-C	NR	8E-9		1.174	[1.112-1.24]	Affymetrix [7846216] (imputed)	N
618	chr6_mcf_hap5	4406737	4406738	rs3117242	22808956	Lyons PA	2012-07-19	N Engl J Med	Genetically distinct subsets within ANCA-associated vasculitis.	Antineutrophil cytoplasmic antibody-associated vasculitis	914 European ancestry cases, 5,259 European ancestry controls	1,454 European ancestry cases, 1,666 European ancestry controls	6p21.32	HLA-DP, COL11A2	rs3117242-?	NR	1E-71		3.67	[NR]	Affymetrix [NR]	N
618	chr6_mcf_hap5	4408139	4408140	rs3128923	33736632	Zeng Z	2021-03-18	BMC Med Genomics	Genome-wide association study identifies new loci associated with risk of HBV infection and disease progression.	Hepatitis B	460 Chinese ancestry cases, 169 Chinese ancestry controls	NA	6p21.32	HLA-DPA2	rs3128923-?	NR	2E-6				Affymetrix [607153]	N
618	chr6_mcf_hap5	4408989	4408990	rs4282438	24097066	Li Y	2013-10-06	Nat Genet	A genome-wide association study in Han Chinese identifies a susceptibility locus for primary Sjogren's syndrome at 7q11.23.	Sjogren's syndrome	542 Han Chinese ancestry cases, 1,050 Han Chinese ancestry controls	1,303 Han Chinese ancestry cases, 2,727 Han Chinese ancestry controls	6p21.32	COL11A2, HLA-DPB1, HLA-DPA1	rs4282438-G	0.3546	9E-25		1.58	[1.45-1.72]	Affymetrix [556134]	N
618	chr6_mcf_hap5	4408989	4408990	rs4282438	23817570	Shi Y	2013-06-30	Nat Genet	A genome-wide association study identifies two new cervical cancer susceptibility loci at 4q12 and 17q12.	Cervical cancer	Up to 1,364 Han Chinese ancestry cases, up to 3,028 Han Chinese ancestry controls	4,167 Han Chinese ancestry cases, 7,196 Han Chinese ancestry controls	6p21.32	HLA-DPB2	rs4282438-?	0.56	5E-27	(Stringently Matched)	1.35	[1.27-1.41]	Affymetrix [563339]	N
618	chr6_mcf_hap5	4409057	4409058	rs2064479	31044621	Rimpela JM	2019-05-02	Blood Press	Genome-wide association study of white-coat effect in hypertensive patients.	White coat effect (clinic diastolic blood pressure minus ambulatory diastolic blood pressure)	206 Finnish ancestry individuals	NA	6p21.32	HLA-DPB1	rs2064479-A	0.26	5E-6		2.4	[1.42-3.38] unit increase	Illumina [629414]	N
618	chr6_mcf_hap5	4412260	4412261	rs910320	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.32	Intergenic	rs910320-?		8E-8		1.05	[1.03-1.07]	Illumina [7645193] (imputed)	N
618	chr6_mcf_hap5	4412483	4412484	rs3128930	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p21.32	HLA-DPA1	rs3128930-C	0.683	7E-6		0.053	[0.029-0.077] unit increase	Affymetrix, Illumina [7374092] (imputed)	N
618	chr6_mcf_hap5	4412907	4412908	rs872956	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.32	Intergenic	rs872956-?		8E-8		1.58	[1.34-1.86]	Illumina [7645193] (imputed)	N
618	chr6_mcf_hap5	4412969	4412972	rs57746686	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cervical cancer	967 East Asian ancestry cases, 60,614 East Asian ancestry controls	NA	6p21.32		rs57746686-G	0.159023897	1E-9		0.38955024	[0.26-0.52] unit increase	Illumina [13381745] (imputed)	N
618	chr6_mcf_hap5	4414980	4414981	rs3130218	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cervical cancer	6,563 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs3130218-A	NR	5E-9		1.16171	NR	Affymetrix [7846216] (imputed)	N
618	chr6_mcf_hap5	4419083	4419084	rs9277630	34246321	Fukunaga K	2021-07-10	Am J Hum Genet	Genome-wide association study reveals an association between the HLA-DPB1<sup>*</sup>02:01:02 allele and wheat-dependent exercise-induced anaphylaxis.	Wheat-dependent exercise-induced anaphylaxis	77 Japanese ancestry cases, 924 Japanese ancestry controls	91 Japanese ancestry cases, 435 Japanese ancestry controls	6p21.32		rs9277630-A	0.26	1E-11		3.53	[2.45-5.09]	Illumina [3891096] (imputed)	N
618	chr6_mcf_hap5	4419124	4419125	rs733208	24722205	Kwak SH	2014-04-17	Hum Mol Genet	A genome-wide association study on thyroid function and anti-thyroid peroxidase antibodies in Koreans.	Thyroid peroxidase antibody positivity	377 Korean ancestry cases, 3,019 Korean ancestry anti-TPO controls	108 Korean ancestry cases, 734 Korean ancestry controls	6p21.32	HLA-DPB2	rs733208-A	0.30	4E-7		1.435	[1.30-1.57]	Affymetrix [1418709] (imputed)	N
618	chr6_mcf_hap5	4419328	4419329	rs9277636	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	6p21.32	NR	rs9277636-G	0.153	3E-8		0.0105227	[0.0068-0.0143] unit increase	NR [~ 9732723] (imputed)	N
620	chr6_mcf_hap5	4599615	4599616	rs9277914	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	COL11A2	rs9277914-A	NR	8E-9		0.0222494	[0.015-0.03] unit increase	Affymetrix [321016] (imputed)	N
620	chr6_mcf_hap5	4599658	4599659	rs3130160	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.32	NR	rs3130160-?	NR	9E-11				Affymetrix [~ 8270000] (imputed)	N
620	chr6_mcf_hap5	4600545	4600546	rs3129205	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	COL11A2	rs3129205-T	0.348	3E-25	(Collagen alpha-2(XI) chain, COL11A2.11278.4.3)	0.27	[0.21-0.33] unit increase	Affymetrix [10572788] (imputed)	N
620	chr6_mcf_hap5	4605995	4605996	rs2229790	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	6p21.32	COL11A2	rs2229790-?	NR	3E-13		0.313	[0.23-0.4] unit decrease	Illumina [34656550] (imputed)	N
620	chr6_mcf_hap5	4609826	4609827	rs73741509	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.32		rs73741509-C	0.971	2E-14				Affymetrix [10369434] (imputed)	N
620	chr6_mcf_hap5	4610403	4610404	rs2855446	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6p21.32	Intergenic	rs2855446-A	0.6847	4E-9	(MTAG)	0.0083	[0.0056-0.011] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
620	chr6_mcf_hap5	4612263	4612264	rs2855440	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein COL11A2	5,366 Icelandic ancestry individuals	NA	6p21.32		rs2855440-T	0.3577	4E-31		0.229242	[0.19-0.27] unit decrease	Illumina [7506463] (imputed)	N
620	chr6_mcf_hap5	4613399	4613400	rs73741526	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.32		rs73741526-A	0.971	3E-13				Affymetrix [10369434] (imputed)	N
620	chr6_mcf_hap5	4615442	4615443	rs147927477	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Height	458,235 European ancestry individuals	NA	6p21.32		rs147927477-?	NR	9E-12		0.215425	[0.15-0.28] unit decrease	NR [9800000] (imputed)	N
620	chr6_mcf_hap5	4617712	4617713	rs2254287	18193043	Willer CJ	2008-01-13	Nat Genet	Newly identified loci that influence lipid concentrations and risk of coronary artery disease.	LDL cholesterol	8,589 European ancestry individuals	12,981 European ancestry individuals	6p21.32	B3GALT4	rs2254287-G	0.38	5E-8		1.91	[NR] mg/dl increase	Affymetrix, Illumina [~ 2261000] (imputed)	N
620	chr6_mcf_hap5	4618007	4618008	rs1799908	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	COL11A2	rs1799908-A	NR	5E-10		0.0178819	[0.012-0.024] unit decrease	Affymetrix [321016] (imputed)	N
620	chr6_mcf_hap5	4625643	4625644	rs41317102	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	6p21.32	COL11A2	rs41317102-C	NR	2E-7		0.247907	[0.15-0.34] unit increase	Illumina [at least 950000] (imputed)	N
620	chr6_mcf_hap5	4627291	4627292	rs9277934	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	COL11A2	rs9277934-T	NR	2E-10		0.0194123	[0.013-0.025] unit increase	Affymetrix [321016] (imputed)	N
620	chr6_mcf_hap5	4633980	4633981	rs144092339	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein COL11A2	5,366 Icelandic ancestry individuals	NA	6p21.32		rs144092339-T	0.02245	3E-20		0.580629	[0.46-0.7] unit increase	Illumina [7506463] (imputed)	N
620	chr6_mcf_hap5	4633980	4633981	rs144092339	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs144092339-T	0.037	1E-22	(Collagen alpha-2(XI) chain, COL11A2.11278.4.3)	0.63	[0.51-0.75] unit increase	Affymetrix [10572788] (imputed)	N
620	chr6_mcf_hap5	4635424	4635425	rs1050673	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.32	NR	rs1050673-G	0.64734375	4E-21	(COL11A2, 11278_4_3)	0.24454433	[0.19-0.29] unit increase	Illumina [> 1000000] (imputed)	N
620	chr6_mcf_hap5	4635424	4635425	rs1050673	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.32	NR	rs1050673-G	0.64734375	3E-9	(MICA, 2730_58_2)	0.15462574	[0.1-0.21] unit increase	Illumina [> 1000000] (imputed)	N
620	chr6_mcf_hap5	4643152	4643153	rs35690712	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs35690712-C	0.03	6E-22	(Collagen alpha-2(XI) chain, COL11A2.11278.4.3)	0.69	[0.55-0.83] unit increase	Affymetrix [10572788] (imputed)	N
620	chr6_mcf_hap5	4648543	4648544	rs421446	27244555	Li Y	2016-05-31	Nat Commun	Genome-wide association study identifies 8p21.3 associated with persistent hepatitis B virus infection among Chinese.	Persistent hepatitis B virus infection	1,251 Chinese ancestry persistently infected cases, 1,057 Chinese ancestry spontaneously recovered controls	3,905 Chinese ancestry persistently infected cases, 3,356 Chinese ancestry spontaneously recovered controls	6p21.32	MIR219A1	rs421446-G		3E-6		1.47	[1.25-1.72]	Affymetrix, Illumina [up to 4494311] (imputed)	N
620	chr6_mcf_hap5	4666178	4666179	rs146306986	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.32	TAPBP	rs146306986-C	0.99	3E-96	(TAPBP, 12378_71_3)	2.5151718	[2.29-2.74] unit decrease	Illumina [> 1000000] (imputed)	N
620	chr6_mcf_hap5	4666680	4666681	rs1705001	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	6p21.32	intergenic	rs1705001-A	0.2413	4E-11		0.0133	[0.0094-0.0172] unit increase	Affymetrix [18391927] (imputed)	N
620	chr6_mcf_hap5	4668243	4668244	rs411919	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	6p21.32	RING1	rs411919-G	0.73	8E-14				NR [> 9500000] (imputed)	N
620	chr6_mcf_hap5	4671381	4671382	rs77206300	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PDIA3	5,363 Icelandic ancestry individuals	NA	6p21.32		rs77206300-A	0.01105	6E-12		0.630021	[0.45-0.81] unit increase	Illumina [7506463] (imputed)	N
620	chr6_mcf_hap5	4678015	4678016	rs9277952	23817570	Shi Y	2013-06-30	Nat Genet	A genome-wide association study identifies two new cervical cancer susceptibility loci at 4q12 and 17q12.	Cervical cancer	Up to 1,364 Han Chinese ancestry cases, up to 3,028 Han Chinese ancestry controls	4,167 Han Chinese ancestry cases, 7,196 Han Chinese ancestry controls	6p21.32	intergenic	rs9277952-?	0.53	2E-9	(Matched)	1.18	[1.12-1.23]	Affymetrix [563339]	N
620	chr6_mcf_hap5	4713638	4713639	rs17215231	32424353	Zhang H	2020-05-18	Nat Genet	Genome-wide association study identifies 32 novel breast cancer susceptibility loci from overall and subtype-specific analyses.	Breast cancer (estrogen-receptor negative, progesterone-receptor negative, and human epidermal growth factor-receptor negative)	8,602 European ancestry triple negative cases, 9,414 European ancestry BRCA1 mutation carrier cases, 100,971 European ancestry controls	NA	6p21.32	NR	rs17215231-C	0.92	9E-13		1.1764705	[1.12-1.23]	Illumina [~ 9700000] (imputed)	N
621	chr6_mcf_hap5	4720291	4720292	rs3445	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	6p21.32	NR	rs3445-A	0.156	1E-9		0.00933656	[0.0063-0.0123] unit increase	NR [9732723] (imputed)	N
621	chr6_mcf_hap5	4724219	4724220	rs469064	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TAPBP	5,359 Icelandic ancestry individuals	NA	6p21.32		rs469064-C	0.4368	9E-113		0.401004	[0.37-0.44] unit increase	Illumina [7506463] (imputed)	N
621	chr6_mcf_hap5	4745696	4745697	rs144706539	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TAPBP	5,359 Icelandic ancestry individuals	NA	6p21.32		rs144706539-A	0.0122	6E-205		2.36433	[2.21-2.52] unit increase	Illumina [7506463] (imputed)	N
621	chr6_mcf_hap5	4745696	4745697	rs144706539	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	TAPBP	rs144706539-A	0.015	5E-94	(Tapasin, TAPBP.12378.71.3)	1.98	[1.78-2.18] unit increase	Affymetrix [10572788] (imputed)	N
621	chr6_mcf_hap5	4750514	4750515	rs9277972	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	6p21.32	NA	rs9277972-A	0.8069	5E-15		0.017	[0.013-0.021] unit decrease	NR [~ 27400000] (imputed)	N
621	chr6_mcf_hap5	4754050	4754051	rs2282851	34050765	Zhang L	2021-05-29	J Clin Endocrinol Metab	Joint genome-wide association analyses identified 49 novel loci for age at natural menopause.	Age at menopause	181,219 European ancestry individuals, 43,861 East Asian ancestry individuals	NA	6p21.32		rs2282851-T	0.28	1E-9		0.08	unit increase	Illumina [2093892] (imputed)	N
621	chr6_mcf_hap5	4754050	4754051	rs2282851	34050765	Zhang L	2021-05-29	J Clin Endocrinol Metab	Joint genome-wide association analyses identified 49 novel loci for age at natural menopause.	Age at menopause	181,219 European ancestry individuals	NA	6p21.32		rs2282851-T	0.28	2E-9		0.09	unit increase	Illumina [2398641] (imputed)	N
621	chr6_mcf_hap5	4756079	4756080	rs1061801	33128006	Timmins IR	2020-10-30	Commun Biol	Genome-wide association study of self-reported walking pace suggests beneficial effects of brisk walking on health and survival.	Walking pace	450,967 European ancestry individuals	NA	6p21.32	ZBTB22	rs1061801-G	NR	5E-8		0.00866168	[0.0055-0.0118] unit increase	Affymetrix [10061374] (imputed)	N
621	chr6_mcf_hap5	4756079	4756080	rs1061801	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (father's age at death)	309,383 European ancestry individuals	NA	6p21.32	NR	rs1061801-A	NR	3E-6		0.01574	[0.0091-0.0224] unit decrease	Illumina [541614]	N
621	chr6_mcf_hap5	4756079	4756080	rs1061801	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (father's age at death or father's attained age)	up to 699,000 European ancestry individuals	NA	6p21.32	NR	rs1061801-G		2E-6				Illumina [458865]	N
621	chr6_mcf_hap5	4756079	4756080	rs1061801	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6p21.32		rs1061801-A	0.187	1E-9		0.011	[0.0075-0.0145] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
621	chr6_mcf_hap5	4756079	4756080	rs1061801	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6p21.32	Intergenic	rs1061801-A	0.187	2E-10	(MTAG)	0.0108	[0.0075-0.0141] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
621	chr6_mcf_hap5	4767838	4767839	rs9277979	30120083	Ferguson A	2018-08-14	EBioMedicine	Genome-Wide Association Study of Circadian Rhythmicity in 71,500 UK Biobank Participants and Polygenic Association with Mood Instability.	Disrupted circadian rhythm (low relative amplitude of rest-activity cycles)	at least 2,700 European ancestry cases, at least 68,300 European ancestry controls	NA	6p21.32	DAXX	rs9277979-T	NR	2E-6		0.167	unit increase	Affymetrix [7969123] (imputed)	N
621	chr6_mcf_hap5	4779980	4779981	rs9277988	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6p21.32	NR	rs9277988-?	NR	3E-13				Affymetrix [~ 8270000] (imputed)	N
621	chr6_mcf_hap5	4779980	4779981	rs9277988	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	6p21.32	NR	rs9277988-C	0.1959	7E-14		0.023318363	[0.017-0.029] unit increase	Affymetrix [10549349] (imputed)	N
621	chr6_mcf_hap5	4779980	4779981	rs9277988	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	6p21.32	NR	rs9277988-C	0.188	7E-8		0.0104018	[0.0066-0.0142] unit decrease	NR [9732723] (imputed)	N
621	chr6_mcf_hap5	4781875	4781876	rs3130269	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs3130269-A	0.514	3E-63	(Tapasin, TAPBP.12378.71.3)	0.39	[0.35-0.43] unit decrease	Affymetrix [10572788] (imputed)	N
621	chr6_mcf_hap5	4782857	4782858	rs184722928	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	Systemic lupus erythematosus	1,639 East Asian ancestry cases, 2,410 East Asian ancestry controls	NA			rs184722928-A	NR	7E-6		0.6037	[0.34-0.87] unit decrease	Illumina [NR] (imputed)	N
621	chr6_mcf_hap5	4786199	4786200	rs9277992	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		6p21.32	DAXX	rs9277992-G	0.810445	6E-14		0.0132109	[0.0098-0.0167] unit decrease	Affymetrix [12370749]	N
621	chr6_mcf_hap5	4790194	4790195	rs187208364	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	6p21.32		rs187208364-?	NR	5E-8				Affymetrix [NR] (imputed)	N
621	chr6_mcf_hap5	4793557	4793558	rs9278004	34197731	Li Q	2021-06-23	Am J Hum Genet	Whole-exome sequencing reveals common and rare variants in immunologic and neurological genes implicated in achalasia.	Idiopathic achalasia	280 Chinese Han ancestry cases, 1,121 Chinese Han ancestry controls	NA	6p21.32		rs9278004-A	0.045	6E-6		2.9	[1.83-4.6]	Illumina [476650] (imputed)	N
621	chr6_mcf_hap5	4800444	4800445	rs9278020	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	6p21.32	NR	rs9278020-A	0.1012	4E-8				NR [9056863] (imputed)	N
621	chr6_mcf_hap5	4802449	4802450	rs114984535	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	6p21.32	DAXX, KIFC1	rs114984535-T	0.985403356	2E-6		1.2639532	[1.15-1.39]	Illumina [10439017] (imputed)	N
621	chr6_mcf_hap5	4819348	4819349	rs118109745	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	6p21.32		rs118109745-?	NR	7E-10		0.0811	unit decrease	NR [NR]	N
621	chr6_mcf_hap5	4828856	4828857	rs9278039	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.32		rs9278039-T	0.855	4E-12				Affymetrix [10369434] (imputed)	N
585	chr6_qbl_hap6	168	169	rs150814685	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma and major depressive disorder	46,802 European ancestry asthma cases, 59,851 European ancestry major depressive disorder cases, 460,635 European ancestry controls	NA	6p22.1	C6orf100, GPX5, GPX6, HCG14, LOC401242, NKAPL, OR2B3, OR2J2, OR2J3, OR2W1, TRIM27, ZBED9, ZKSCAN3, ZKSCAN4, ZNF311, ZSCAN12, ZSCAN23, ZSCAN26, ZSCAN31, LOC100129636, PGBD1	rs150814685-?	NR	2E-11				Affymetrix [up to 13554551] (imputed)	N
585	chr6_qbl_hap6	1363	1364	rs16894234	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6p22.1	NR	rs16894234-?	NR	3E-12				Affymetrix [~ 8270000] (imputed)	N
585	chr6_qbl_hap6	15647	15648	rs1233578	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	RPSAP2	rs1233578-G	NR	2E-8		0.0228089	[0.015-0.031] unit decrease	Affymetrix [323858] (imputed)	N
585	chr6_qbl_hap6	15647	15648	rs1233578	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p22.1	NR	rs1233578-G	0.18	4E-9		1.13	[1.08-1.18]	Affymetrix [9886854] (imputed)	N
585	chr6_qbl_hap6	15647	15648	rs1233578	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p22.1	NR	rs1233578-G	0.18	4E-14			[NR]	Affymetrix [9886854] (imputed)	N
585	chr6_qbl_hap6	15647	15648	rs1233578	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p22.1	NR	rs1233578-G	0.18	2E-11		1.11	[1.08-1.14]	Affymetrix [9886854] (imputed)	N
585	chr6_qbl_hap6	15647	15648	rs1233578	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p22.1	NR	rs1233578-G	0.18	8E-14			[NR]	Affymetrix [9886854] (imputed)	N
585	chr6_qbl_hap6	15647	15648	rs1233578	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in non-current smokers	16,488 European ancestry cases, 169,688 European ancestry controls	NA	6p22.1	NR	rs1233578-G	0.18	2E-11		1.11	[1.08-1.14]	Affymetrix [9886854] (imputed)	N
585	chr6_qbl_hap6	15647	15648	rs1233578	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in never smokers	8,631 European ancestry cases, 120,544 European ancestry controls	NA	6p22.1	NR	rs1233578-G	0.18	3E-9		1.13	[1.09-1.18]	Affymetrix [9886854] (imputed)	N
585	chr6_qbl_hap6	15647	15648	rs1233578	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in ever smokers	12,446 European ancestry cases, 59,145 European ancestry controls	NA	6p22.1	NR	rs1233578-G	0.18	3E-7		1.1	[1.06-1.15]	Affymetrix [9886854] (imputed)	N
585	chr6_qbl_hap6	15647	15648	rs1233578	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	6p22.1	TRIM27	rs1233578-G	0.18	2E-17				NR [> 9500000] (imputed)	N
585	chr6_qbl_hap6	15647	15648	rs1233578	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	6p22.1	TRIM27	rs1233578-G	0.17936300000000005	4E-12		1.0560242	[1.03991341766738-1.07238465256811]	NR [9572556] (imputed)	N
585	chr6_qbl_hap6	15647	15648	rs1233578	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	6p22.1	NR	rs1233578-A	NR	1E-9		6.098	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
585	chr6_qbl_hap6	15647	15648	rs1233578	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	RPSAP2	rs1233578-A	NR	5E-12		6.899	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
585	chr6_qbl_hap6	15647	15648	rs1233578	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls, 2,149 African ancestry cases, 6,055 African ancestry controls, 1,239 Japanese ancestry cases, 3,976 Japanese ancestry controls, 606 Latino cases, 792 Latino controls	NA	6p22.1	GPX5, TRIM27	rs1233578-G	0.13	6E-7		1.09	[1.05-1.12]	Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
585	chr6_qbl_hap6	15647	15648	rs1233578	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls	NA	6p22.1	GPX5, TRIM27	rs1233578-G	0.13	5E-9		0.1	[0.061-0.139] unit increase	Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
585	chr6_qbl_hap6	17351	17353	rs372002372	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs372002372-?		2E-10	(Posterior corona radiata )			NR [8955960] (imputed)	N
585	chr6_qbl_hap6	17351	17353	rs372002372	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs372002372-?		1E-11	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
585	chr6_qbl_hap6	17351	17353	rs372002372	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs372002372-?		1E-11	(Superior corona radiata)			NR [8955960] (imputed)	N
585	chr6_qbl_hap6	17351	17353	rs372002372	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs372002372-?		5E-8	(Average across all tracts)			NR [8955960] (imputed)	N
585	chr6_qbl_hap6	17351	17353	rs372002372	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs372002372-?		2E-11	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
585	chr6_qbl_hap6	17351	17353	rs372002372	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs372002372-?		2E-10	(Posterior corona radiata )			NR [8955960] (imputed)	N
585	chr6_qbl_hap6	18161	18162	rs7763390	33740410	Warrier V	2021-03-16	Lancet Psychiatry	Gene-environment correlations and causal effects of childhood maltreatment on physical and mental health: a genetically informed approach.	Childhood maltreatment	185,414 European ancestry individuals	NA	6p22.1	NR	rs7763390-A	0.84	7E-9		0.027	[0.017-0.037] unit decrease	Affymetrix, Illumina [at least 500527] (imputed)	N
585	chr6_qbl_hap6	23155	23156	rs1233587	32358547	Persyn E	2020-05-01	Nat Commun	Genome-wide association study of MRI markers of cerebral small vessel disease in 42,310 participants.	White matter integrity (mean diffusivity)	17,467 European ancestry individuals	NA	6p22.1	ZFP57	rs1233587-T	0.295257	6E-12		0.325855	[0.23-0.42] unit decrease	Affymetrix [NR] (imputed)	N
585	chr6_qbl_hap6	23155	23156	rs1233587	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs1233587-?		2E-8	(Anterior corona radiata)			NR [8955960] (imputed)	N
585	chr6_qbl_hap6	24934	24935	rs1742741	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs1742741-?		4E-9	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
585	chr6_qbl_hap6	24934	24935	rs1742741	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs1742741-?		8E-9	(Retrolenticular part of internal capsule)			NR [8955960] (imputed)	N
585	chr6_qbl_hap6	24934	24935	rs1742741	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	6p22.1	NR	rs1742741-?		2E-8	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
585	chr6_qbl_hap6	24934	24935	rs1742741	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	6p22.1	NR	rs1742741-?		2E-8	(Average across all tracts)			NR [8955960] (imputed)	N
585	chr6_qbl_hap6	27088	27089	rs568609045	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium HDL	115,082 European ancestry individuals	NA	6p22.1		rs568609045-G	0.908816	1E-8		0.0550229	[0.036-0.074] unit increase	NR [11722792] (imputed)	N
585	chr6_qbl_hap6	27088	27089	rs568609045	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large HDL	115,082 European ancestry individuals	NA	6p22.1		rs568609045-G	0.908816	4E-9		0.0550531	[0.037-0.073] unit increase	NR [11722792] (imputed)	N
585	chr6_qbl_hap6	27088	27089	rs568609045	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in HDL	115,082 European ancestry individuals	NA	6p22.1		rs568609045-G	0.908816	4E-8		0.052683	[0.034-0.071] unit increase	NR [11722792] (imputed)	N
585	chr6_qbl_hap6	28400	28400	rs71548373	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	6p22.1	intergenic	rs71548373-?	NR	6E-13		0.0283	[0.021-0.035] unit decrease	Affymetrix [5701386] (imputed)	N
585	chr6_qbl_hap6	30993	30994	rs1233595	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs1233595-?		2E-9	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
585	chr6_qbl_hap6	30993	30994	rs1233595	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs1233595-?		1E-9	(Average across all tracts)			NR [8955960] (imputed)	N
585	chr6_qbl_hap6	30993	30994	rs1233595	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs1233595-?		4E-9	(Average across all tracts)			NR [8955960] (imputed)	N
585	chr6_qbl_hap6	30993	30994	rs1233595	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs1233595-?		3E-9	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
585	chr6_qbl_hap6	38076	38077	rs1233604	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p22.1	AL662890.1	rs1233604-A	NR	4E-8		0.0237945	[0.015-0.032] unit decrease	Affymetrix [319769] (imputed)	N
585	chr6_qbl_hap6	40373	40374	rs9257158	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p22.1	AL662890.1	rs9257158-G	NR	1E-8		0.0194989	[0.013-0.026] unit decrease	Affymetrix [323123] (imputed)	N
585	chr6_qbl_hap6	68374	68375	rs9257190	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p22.1	AL662890.3	rs9257190-G	NR	2E-10		0.0253484	[0.018-0.033] unit decrease	Affymetrix [323858] (imputed)	N
585	chr6_qbl_hap6	69760	69760	rs202065757	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p22.1	NR	rs202065757-?	NR	3E-6		0.1767	[0.1-0.25] unit increase	Illumina [at least 560000] (imputed)	N
585	chr6_qbl_hap6	71527	71528	rs141456208	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs141456208-?		4E-6		1.75	[1.38-2.23]	Illumina [7645193] (imputed)	N
585	chr6_qbl_hap6	74083	74084	rs7739915	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p22.1		rs7739915-G	0.829881	3E-8		0.0298334	[0.019-0.04] unit decrease	NR [11722792] (imputed)	N
585	chr6_qbl_hap6	74598	74599	rs2013652	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p22.1		rs2013652-T	0.605	3E-27				Affymetrix [10369434] (imputed)	N
585	chr6_qbl_hap6	79517	79518	rs4324798	19836008	Landi MT	2009-10-15	Am J Hum Genet	A genome-wide association study of lung cancer identifies a region of chromosome 5p15 associated with risk for adenocarcinoma.	Lung adenocarcinoma	5,739 European ancestry cases, 5,848 European ancestry controls	7,561 European ancestry cases, 13,818 European ancestry controls	6p22.1	TRNAA-UGC	rs4324798-A	0.09	2E-8		1.16	[1.09-1.24]	Illumina [515922]	N
585	chr6_qbl_hap6	82319	82319	rs142204688	32227112	Lee MA	2020-03-30	Hum Mol Genet	Common variation at 16p11.2 is associated with glycosuria in pregnancy: Findings from a genome-wide association study in European women.	Glycosuria in pregnancy (offspring genotype effect)	747 European ancestry cases, 2,991 European ancestry controls	NA	6p22.1	NR	rs142204688-ATTT	0.024554775	2E-9		3.1145043	[2.74466796-3.4843406]	Illumina [9873828] (imputed)	N
585	chr6_qbl_hap6	90593	90594	rs9257226	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6p22.1	XXbac-BPG308K3.5	rs9257226-G	NR	2E-9		0.0237897	[0.016-0.032] unit decrease	Affymetrix [321114] (imputed)	N
585	chr6_qbl_hap6	95081	95082	rs67662386	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	6p22.1	NR	rs67662386-?	NR	5E-7		0.135361	[0.082-0.188] unit increase	NR [13958389] (imputed)	N
585	chr6_qbl_hap6	95478	95479	rs187766969	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p22.1	NR	rs187766969-?	NR	3E-10		0.1907	[0.13-0.25] unit decrease	Illumina [at least 560000] (imputed)	N
585	chr6_qbl_hap6	95877	95878	rs209181	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	XXbac-BPG308K3.5	rs209181-A	NR	3E-15		0.032556	[0.024-0.041] unit decrease	Affymetrix [323858] (imputed)	N
585	chr6_qbl_hap6	95877	95878	rs209181	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	XXbac-BPG308K3.5	rs209181-A	NR	4E-15		0.0325128	[0.024-0.041] unit decrease	Affymetrix [127266] (imputed)	N
585	chr6_qbl_hap6	97304	97305	rs3118359	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	6p22.1	intergenic	rs3118359-T	0.0838	3E-13		0.0378	[0.028-0.048] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
585	chr6_qbl_hap6	99256	99257	rs3135296	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Neuroticism	274,107 British ancestry individuals	NA	6p22.1	NR	rs3135296-?	NR	6E-6		1.0090817	[1.01-1.01]	NR [8968716] (imputed)	N
585	chr6_qbl_hap6	99256	99257	rs3135296	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Major depressive disorder (lifetime)	16,301 British ancestry cases, 50,870 British ancestry controls	NA	6p22.1	NR	rs3135296-?	NR	5E-7		1.1049724	[1.06-1.15]	NR [5276842] (imputed)	N
585	chr6_qbl_hap6	99256	99257	rs3135296	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Help-seeking from a GP (without major depressive disorder symptoms)	8,632 British ancestry cases, 49,493 British ancestry controls	NA	6p22.1	NR	rs3135296-?	NR	1E-6		1.1350738	[1.08-1.19]	NR [5276842] (imputed)	N
585	chr6_qbl_hap6	99256	99257	rs3135296	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Help-seeking from a GP	113,262 British ancestry cases, 219,360 British ancestry controls	NA	6p22.1	NR	rs3135296-A	0.88	4E-12		1.0570824	[1.04-1.07]	NR [5276842] (imputed)	N
585	chr6_qbl_hap6	99471	99472	rs3131337	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	6p22.1	TRIM27	rs3131337-G	0.871891	1E-14		0.0229188	[0.017-0.029] unit increase	Affymetrix [NR] (imputed)	N
585	chr6_qbl_hap6	99471	99472	rs3131337	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	6p22.1	NR	rs3131337-?	NR	7E-6		0.0811	[0.046-0.116] unit decrease	Illumina [at least 560000] (imputed)	N
585	chr6_qbl_hap6	99860	99861	rs3132379	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	XXbac-BPG308K3.5	rs3132379-T	NR	1E-8		0.0232897	[0.015-0.031] unit decrease	Affymetrix [323858] (imputed)	N
585	chr6_qbl_hap6	99860	99861	rs3132379	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	XXbac-BPG308K3.5	rs3132379-T	NR	2E-8		0.0229592	[0.015-0.031] unit decrease	Affymetrix [127266] (imputed)	N
585	chr6_qbl_hap6	103410	103411	rs9278091	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA	6p22.1	NR	rs9278091-?	NR	6E-7		0.0586	[0.036-0.082] unit increase	Illumina [at least 560000] (imputed)	N
585	chr6_qbl_hap6	103681	103682	rs150548387	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Daytime sleep phenotypes	874 European ancestry individuals	NA	6p22.1	RPL13P, ZNF90P2, HCG14, TRIM27	rs150548387-G	NR	7E-7	(daytime resting)	2.54	[1.54-3.54] unit decrease	Affymetrix [7141204] (imputed)	N
585	chr6_qbl_hap6	106691	106692	rs9257248	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p22.1	NR	rs9257248-T	0.114	4E-11		0.0123	[0.0086-0.016] unit decrease	NR [7666894] (imputed)	N
585	chr6_qbl_hap6	106691	106692	rs9257248	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p22.1	LOC442181, LOC401242	rs9257248-A	0.217	7E-20				Illumina [118177]	N
585	chr6_qbl_hap6	120121	120122	rs561122079	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	6p22.1	XXbac-BPG308K3.5	rs561122079-T	0.0012	5E-6		1.4759	[0.84-2.11] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
585	chr6_qbl_hap6	124495	124496	rs9257270	32592749	Butler-Laporte G	2020-06-24	Clin Microbiol Infect	Elevated body-mass index is associated with an increased risk of infectious disease admissions and mortality: a mendelian randomization study.	Sepsis (hospital admission)	4,403 European ancestry cases, 17,612 European ancestry controls	NA	6p22.1	ZFP57	rs9257270-A	0.8	2E-8		0.018	[0.012-0.024] unit increase	NR [NR]	N
586	chr6_qbl_hap6	134241	134250	rs71554969	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p22.1	XXbac-BPG308K3.6	rs71554969-C	NR	8E-12		0.0218335	[0.016-0.028] unit decrease	Affymetrix [323123] (imputed)	N
586	chr6_qbl_hap6	135011	135012	rs3131336	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	6p22.1	TRIM27	rs3131336-C	0.882895	2E-18		0.019064	[0.015-0.023] unit decrease	Affymetrix [12370749]	N
586	chr6_qbl_hap6	136544	136548	rs138792987	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Inguinal hernia	16,725 European ancestry cases, 428,356 European ancestry controls, 1,664 East Asian ancestry cases, 177,062 East Asian ancestry controls	NA	6p22.1		rs138792987-G	NR	8E-11		0.1283	[0.09-0.167] unit decrease	Affymetrix, Illumina [25841416] (imputed)	N
586	chr6_qbl_hap6	143308	143309	rs3118365	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	6p22.1	LINC01623	rs3118365-A	0.0924	6E-12		0.0459	[0.033-0.059] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
586	chr6_qbl_hap6	143339	143340	rs4484511	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6p22.1	NR	rs4484511-?	NR	7E-14				Affymetrix [~ 8270000] (imputed)	N
586	chr6_qbl_hap6	143650	143651	rs113317416	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	XXbac-BPG308K3.6	rs113317416-T	NR	5E-10		0.0278345	[0.019-0.037] unit decrease	Affymetrix [321016] (imputed)	N
586	chr6_qbl_hap6	151595	151596	rs146347028	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Fibroblast growth factor basic levels	7,565 Finnish ancestry individuals	NA	6p22.1	NR	rs146347028-C		3E-6		0.2123	[0.12-0.3] SD units decrease	NR [10700000] (imputed)	N
586	chr6_qbl_hap6	157459	157460	rs7755875	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	6p22.1	TRIM27	rs7755875-A	0.3193	3E-11		0.002	[0.0014-0.0026] unit increase	Affymetrix [15275733] (imputed)	N
586	chr6_qbl_hap6	169019	169019	rs71548400	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6p22.1	HCG14	rs71548400-ATT	NR	4E-9		0.0184951	[0.012-0.025] unit decrease	Affymetrix [321114] (imputed)	N
586	chr6_qbl_hap6	169610	169614	rs150164120	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs150164120-?		4E-10	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
586	chr6_qbl_hap6	169610	169614	rs150164120	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs150164120-?		2E-10	(Average across all tracts)			NR [8955960] (imputed)	N
586	chr6_qbl_hap6	169610	169614	rs150164120	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs150164120-?		1E-9	(Sagittal stratum)			NR [8955960] (imputed)	N
586	chr6_qbl_hap6	169769	169769	rs147662640	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs147662640-?		4E-8	(Average across all tracts)			NR [8955960] (imputed)	N
586	chr6_qbl_hap6	169769	169769	rs147662640	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs147662640-?		2E-8	(Cingulate gyrus)			NR [8955960] (imputed)	N
586	chr6_qbl_hap6	171894	171895	rs3132374	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in diabetes	70,762 European ancestry individuals, 20,967 African American individuals	NA	6p22.1	TRIM27	rs3132374-C	0.916	3E-9		0.959	[0.64-1.27] unit increase	Affymetrix [NR] (imputed)	N
586	chr6_qbl_hap6	175846	175847	rs209126	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p22.1	TRIM27	rs209126-T		6E-27		0.023	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
586	chr6_qbl_hap6	180647	180648	rs3135293	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hyperthyroidism	3,557 European ancestry cases, 456,942 European ancestry controls, 994 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	6p22.1		rs3135293-C	NR	1E-13		0.329	[0.24-0.42] unit increase	Affymetrix, Illumina [25841580] (imputed)	N
586	chr6_qbl_hap6	187550	187551	rs3131099	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Liver iron content	32,858 European ancestry individuals	NA	6p22.1	TRIM27	rs3131099-?	NR	9E-18	(conditional)	0.0654	NR mg/g decrease	Affymetrix [9390170] (imputed)	N
586	chr6_qbl_hap6	192815	192816	rs144996521	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	6p22.1	TRIM27	rs144996521-G	0.999717	5E-10		0.148497	[0.1-0.2] unit increase	NR [13737936] (imputed)	N
586	chr6_qbl_hap6	196934	196935	rs3131103	31219150	Ekenberg C	2019-06-13	J Infect Dis	Single nucleotide polymorphisms in HLA alleles are associated with HIV-1 viral load in demographically diverse, ART-naive participants from the START trial.	Pre-treatment viral load in HIV-1 infection	1,398 European ancestry individuals, 572 Black individuals, 418 Hispanic individuals, 13 Asian ancestry individuals, 39 individuals	NA	6p22.1	TRIM27	rs3131103-G	0.07	9E-16		0.37	[0.28-0.46] unit decrease	Affymetrix [339439]	N
586	chr6_qbl_hap6	198199	198200	rs28400872	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	6p22.1		rs28400872-C	0.340661	5E-11		0.0196364	[0.014-0.025] unit decrease	Illumina [13479924] (imputed)	N
586	chr6_qbl_hap6	200175	200176	rs9468445	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p22.1	NR	rs9468445-?	NR	4E-9		0.1617	[0.11-0.21] unit increase	Illumina [at least 560000] (imputed)	N
586	chr6_qbl_hap6	200314	200315	rs2015436	26087016	Pappa I	2015-06-18	Am J Med Genet B Neuropsychiatr Genet	A genome-wide approach to children's aggressive behavior: The EAGLE consortium.	Childhood and early adolescence aggressive behavior	18,988 European ancestry individuals	NA	6p22.1	TRIM27	rs2015436-T	0.73	2E-6				Affymetrix, Illumina [up to 3856236] (imputed)	N
586	chr6_qbl_hap6	201033	201034	rs1233508	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	6p22.1	TRIM27	rs1233508-T	0.463	2E-16		0.0098	[0.0074-0.0122] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
586	chr6_qbl_hap6	201257	201260	rs200822404	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	6p22.1	NR	rs200822404-?	NR	4E-6		0.1076	[0.062-0.153] unit decrease	Illumina [at least 560000] (imputed)	N
586	chr6_qbl_hap6	208110	208111	rs144965899	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6p22.1	Intergenic	rs144965899-C	0.0463	8E-11	(MTAG)	0.0206	[0.014-0.027] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
586	chr6_qbl_hap6	209191	209192	rs3130895	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p22.1	TRIM27, C6orf100	rs3130895-A	0.218	4E-19				Illumina [118177]	N
586	chr6_qbl_hap6	215798	215799	rs140736187	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p22.1	NR	rs140736187-?	NR	2E-7		0.2249	[0.14-0.31] unit increase	Illumina [at least 560000] (imputed)	N
586	chr6_qbl_hap6	218140	218141	rs111469561	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p22.1	NR	rs111469561-?	NR	1E-6		0.29	[0.17-0.41] unit increase	Illumina [at least 560000] (imputed)	N
586	chr6_qbl_hap6	218507	218508	rs763009	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	6p22.1	LINC01556, ZNF311	rs763009-?	NR	7E-7		0.014226723	[0.0086-0.0199] unit decrease	Illumina [27896057] (imputed)	N
586	chr6_qbl_hap6	219651	219652	rs4947339	20526338	Johnson AD	2010-06-06	Nat Genet	Genome-wide meta-analyses identifies seven loci associated with platelet aggregation in response to agonists.	Platelet aggregation	Up to 3,991 European ancestry individuals	Up to 840 African American individuals	6p22.1	TRIM27	rs4947339-T	0.438	2E-6	(epinehprine)			Affymetrix, Illumina [~ 2330000] (imputed)	N
586	chr6_qbl_hap6	219993	219994	rs3130844	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA	6p22.1	NR	rs3130844-?	NR	7E-6		0.0564	[0.032-0.081] unit increase	Illumina [at least 560000] (imputed)	N
586	chr6_qbl_hap6	220234	220235	rs114683528	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Daytime sleep phenotypes	874 European ancestry individuals	NA	6p22.1	C6orf100, KRT18P1, TRIM27, HCG15, HCG16, ZNF311	rs114683528-T	NR	1E-6	(daytime resting)	2.435	[1.46-3.41] unit decrease	Affymetrix [7141204] (imputed)	N
586	chr6_qbl_hap6	229618	229619	rs9257408	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	6p22.1	NR	rs9257408-G	0.4934	2E-10		0.0314	[0.022-0.041] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
586	chr6_qbl_hap6	229618	229619	rs9257408	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	6p22.1		rs9257408-C	NR	3E-7		1.03	[1.02-1.04]	Affymetrix, Illumina [NR] (imputed)	N
586	chr6_qbl_hap6	229618	229619	rs9257408	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p22.1	intergenic	rs9257408-C	0.41	7E-8	(EA)	1.02	[1-1.04] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
586	chr6_qbl_hap6	229618	229619	rs9257408	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	46,785 European ancestry cases, 42,892 European ancestry controls	NA	6p22.1	intergenic	rs9257408-C	0.38	5E-7		1.05	[1.03-1.08]	Affymetrix, Illumina [~ 14000000] (imputed)	N
586	chr6_qbl_hap6	229618	229619	rs9257408	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	15,748 European ancestry cases, 18,084 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls	6p22.1	Intergenic	rs9257408-C	0.38	5E-8		1.05	[1.03-1.08]	Affymetrix, Illumina [~ 11600000] (imputed)	N
586	chr6_qbl_hap6	237751	237752	rs148696809	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	6p22.1		rs148696809-?	NR	7E-9				NR [NR]	N
586	chr6_qbl_hap6	237751	237752	rs148696809	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma and major depressive disorder	46,802 European ancestry asthma cases, 59,851 European ancestry major depressive disorder cases, 460,635 European ancestry controls	NA	6p22.1	Intergenic	rs148696809-?	NR	5E-9				Affymetrix [up to 13554551] (imputed)	N
586	chr6_qbl_hap6	237751	237752	rs148696809	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	6p22.1	Intergenic	rs148696809-T	0.8828	8E-20		0.0406	[0.032-0.049] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
586	chr6_qbl_hap6	237751	237752	rs148696809	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Squamous cell lung carcinoma	7,426 European ancestry cases, 55,627 European ancestry controls	NA	6p22.1	LINC01556, ZNF311	rs148696809-C	0.086719155	4E-11		1.2477136	[1.168498995-1.332298319]	Illumina [10439017] (imputed)	N
586	chr6_qbl_hap6	237751	237752	rs148696809	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	6p22.1	LINC01556, ZNF311	rs148696809-C	0.086604881	3E-12		1.1571189	[1.11078617-1.205384399]	Illumina [10439017] (imputed)	N
586	chr6_qbl_hap6	247483	247484	rs3130887	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Polyunsaturated fatty acid levels	115,006 European ancestry individuals	NA	6p22.1		rs3130887-G	0.881305	8E-10		0.0379668	[0.026-0.05] unit increase	NR [11722792] (imputed)	N
586	chr6_qbl_hap6	257689	257690	rs3129791	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p22.1	NR	rs3129791-A	0.1148	2E-11		0.0125	[0.0088-0.0162] unit decrease	NR [7666894] (imputed)	N
587	chr6_qbl_hap6	268908	268909	rs114357009	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	6p22.1	C6orf100, HCG14, LOC401242, LOC100129636, OR2B3, OR2H1, OR2J2, OR2J3, OR2W1, OR5V1, OR10C1, OR11A1, OR12D2, OR12D3, OR14J1, TRIM27, ZNF311	rs114357009-A	0.049997	2E-10		1.1579555	[1.11-1.2]	Affymetrix [8274727] (imputed)	N
587	chr6_qbl_hap6	276894	276895	rs77514138	32227112	Lee MA	2020-03-30	Hum Mol Genet	Common variation at 16p11.2 is associated with glycosuria in pregnancy: Findings from a genome-wide association study in European women.	Glycosuria in pregnancy (offspring genotype effect)	747 European ancestry cases, 2,991 European ancestry controls	NA	6p22.1	NR	rs77514138-T	0.01849013	2E-9		3.6386764	[3.217150999-4.060201879]	Illumina [9873828] (imputed)	N
587	chr6_qbl_hap6	284103	284104	rs3130893	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium HDL	115,082 European ancestry individuals	NA	6p22.1		rs3130893-A	0.880989	2E-10		0.037629	[0.026-0.049] unit increase	NR [11722792] (imputed)	N
587	chr6_qbl_hap6	284103	284104	rs3130893	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-6 fatty acid levels	115,006 European ancestry individuals	NA	6p22.1		rs3130893-A	0.880993	9E-9		0.0356831	[0.024-0.048] unit increase	NR [11722792] (imputed)	N
587	chr6_qbl_hap6	284103	284104	rs3130893	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Linoleic acid levels	115,006 European ancestry individuals	NA	6p22.1		rs3130893-A	0.880993	5E-9		0.0364876	[0.024-0.049] unit increase	NR [11722792] (imputed)	N
587	chr6_qbl_hap6	286670	286671	rs3131082	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p22.1	NR	rs3131082-?	NR	2E-7		0.1949	[0.12-0.27] unit decrease	Illumina [at least 560000] (imputed)	N
587	chr6_qbl_hap6	288151	288152	rs3129795	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs3129795-?		8E-6		1.0526316	[1.03-1.08]	Illumina [7645193] (imputed)	N
587	chr6_qbl_hap6	288151	288152	rs3129795	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs3129795-?		2E-6		1.6129031	[1.32-1.96]	Illumina [7645193] (imputed)	N
587	chr6_qbl_hap6	295555	295556	rs3129797	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	6p22.1	ZNF311	rs3129797-C	0.882471	2E-20		0.0273248	[0.022-0.033] unit increase	Affymetrix [NR] (imputed)	N
587	chr6_qbl_hap6	329985	329986	rs114631266	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p22.1	OR2W1	rs114631266-C	0.974	2E-6		0.284	[0.17-0.4] unit increase	Affymetrix, Illumina [7374092] (imputed)	N
587	chr6_qbl_hap6	331327	331328	rs114415956	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	OR2P1P	rs114415956-T	NR	3E-10		0.0401608	[0.028-0.053] unit decrease	Affymetrix [321016] (imputed)	N
587	chr6_qbl_hap6	334341	334341	rs559462124	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs559462124-?		5E-9	(Average across all tracts)			NR [8955960] (imputed)	N
587	chr6_qbl_hap6	334341	334341	rs559462124	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs559462124-?		3E-9	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
587	chr6_qbl_hap6	334341	334341	rs559462124	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs559462124-?		2E-9	(Posterior corona radiata )			NR [8955960] (imputed)	N
587	chr6_qbl_hap6	334341	334341	rs559462124	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs559462124-?		2E-8	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
587	chr6_qbl_hap6	334341	334341	rs559462124	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs559462124-?		2E-8	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
587	chr6_qbl_hap6	334341	334341	rs559462124	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs559462124-?		2E-8	(Cingulate gyrus)			NR [8955960] (imputed)	N
587	chr6_qbl_hap6	334341	334341	rs559462124	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs559462124-?		6E-11	(Posterior corona radiata )			NR [8955960] (imputed)	N
587	chr6_qbl_hap6	334341	334341	rs559462124	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs559462124-?		4E-8	(Cingulate gyrus)			NR [8955960] (imputed)	N
587	chr6_qbl_hap6	334341	334341	rs559462124	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs559462124-?		4E-11	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
587	chr6_qbl_hap6	334341	334341	rs559462124	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs559462124-?		2E-8	(Average across all tracts)			NR [8955960] (imputed)	N
587	chr6_qbl_hap6	334341	334341	rs559462124	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs559462124-?		2E-10	(Superior corona radiata)			NR [8955960] (imputed)	N
587	chr6_qbl_hap6	334341	334341	rs559462124	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	6p22.1	NR	rs559462124-?		2E-8	(Average across all tracts)			NR [8955960] (imputed)	N
587	chr6_qbl_hap6	334341	334341	rs559462124	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs559462124-?		4E-8	(Posterior corona radiata )			NR [8955960] (imputed)	N
587	chr6_qbl_hap6	334341	334341	rs559462124	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs559462124-?		3E-8	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
587	chr6_qbl_hap6	348099	348100	rs3131085	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p22.1	GABBR1, OR12D3, XXbac-BPG308K3.5, TRIM27, AL662791.1, OR2AD1P, OR2P1P, OR2B3, XXbac-BCX196D17.5, OR2N1P, OR2H4P, OR2B4P, XXbac-BPG308K3.6, RPL13P, ZNF90P2, HCG14, RNU6-930P, LINC01556, KRT18P1, RN7SL471P, HCG15, HCG16, ZNF311, XXbac-BPG258E24.10, OR2W1, SAR1P1, OR2J3, OR2J4P, OR2J2, AL645937.1, XXbac-BPG308J9.3, OR2U2P, OR14J1, OR5V1, OR10C1, OR11A1, XXbac-BPG13B8.11, OR2H1, UBDP1, MAS1LP1, MAS1L, RPS17P1, XXbac-BPG13B8.10, OR2I1P, UBD	rs3131085-A	0.07580321	1E-9	(EA, MHC class I polypeptide-related sequence A)	0.5111	[0.35-0.67] unit increase	Affymetrix [509946]	N
587	chr6_qbl_hap6	352087	352088	rs3129787	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129787-?		6E-11	(Posterior corona radiata )			NR [8955960] (imputed)	N
587	chr6_qbl_hap6	352087	352088	rs3129787	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129787-?		4E-11	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
587	chr6_qbl_hap6	352087	352088	rs3129787	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129787-?		3E-8	(Cingulate gyrus)			NR [8955960] (imputed)	N
587	chr6_qbl_hap6	352087	352088	rs3129787	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129787-?		5E-9	(Cingulate gyrus)			NR [8955960] (imputed)	N
587	chr6_qbl_hap6	352087	352088	rs3129787	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129787-?		5E-12	(Posterior corona radiata )			NR [8955960] (imputed)	N
587	chr6_qbl_hap6	352087	352088	rs3129787	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129787-?		2E-8	(Anterior corona radiata)			NR [8955960] (imputed)	N
587	chr6_qbl_hap6	352087	352088	rs3129787	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129787-?		2E-12	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
587	chr6_qbl_hap6	352087	352088	rs3129787	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129787-?		3E-9	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
587	chr6_qbl_hap6	352087	352088	rs3129787	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129787-?		5E-8	(Posterior corona radiata )			NR [8955960] (imputed)	N
587	chr6_qbl_hap6	355656	355656	rs11275996	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs11275996-?		4E-8	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
587	chr6_qbl_hap6	355656	355656	rs11275996	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs11275996-?		7E-9	(Superior corona radiata)			NR [8955960] (imputed)	N
587	chr6_qbl_hap6	361037	361038	rs3129788	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p22.1	OR2B3P, OR2J3	rs3129788-A	0.217	7E-19				Illumina [118177]	N
587	chr6_qbl_hap6	365949	365950	rs115166140	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p22.1	NR	rs115166140-?	NR	1E-9		0.1623	[0.11-0.21] unit increase	Illumina [at least 560000] (imputed)	N
587	chr6_qbl_hap6	368390	368391	rs4463283	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p22.1	OR2B3, OR2J3	rs4463283-A	0.06	1E-6	(EA)	2.61	[1.74-3.90]	Illumina [up to 547389]	N
587	chr6_qbl_hap6	378491	378492	rs3129178	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p22.1	NR	rs3129178-A	0.0951	6E-9	(EA)	0.0669	[0.044-0.089] unit decrease	Illumina [~ 11800000] (imputed)	N
587	chr6_qbl_hap6	384564	384565	rs3129106	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p22.1	NR	rs3129106-?	NR	7E-6		0.0757	[0.043-0.109] unit decrease	Illumina [at least 560000] (imputed)	N
587	chr6_qbl_hap6	385625	385626	rs115328582	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	OR2J3	rs115328582-G	NR	4E-14		0.033147	[0.025-0.042] unit decrease	Affymetrix [321016] (imputed)	N
587	chr6_qbl_hap6	387634	387635	rs3129109	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	6p22.1	OR2J3	rs3129109-T	0.39	2E-17		0.032	[NR] unit decrease	Affymetrix, Illumina [2834208] (imputed)	N
588	chr6_qbl_hap6	406262	406263	rs3129119	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129119-?		3E-11	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
588	chr6_qbl_hap6	406262	406263	rs3129119	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129119-?		2E-8	(Superior corona radiata)			NR [8955960] (imputed)	N
588	chr6_qbl_hap6	406262	406263	rs3129119	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129119-?		2E-11	(Superior corona radiata)			NR [8955960] (imputed)	N
588	chr6_qbl_hap6	406262	406263	rs3129119	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129119-?		1E-9	(Retrolenticular part of internal capsule)			NR [8955960] (imputed)	N
588	chr6_qbl_hap6	415180	415181	rs3129120	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Major depressive disorder (lifetime)	16,301 British ancestry cases, 50,870 British ancestry controls	NA	6p22.1	NR	rs3129120-?	NR	4E-7		1.1049724	[1.06-1.15]	NR [5276842] (imputed)	N
588	chr6_qbl_hap6	415180	415181	rs3129120	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Help-seeking from a psychiatrist	36,286 British ancestry cases, 297,126 British ancestry controls	NA	6p22.1	NR	rs3129120-T	0.876	1E-10		1.081081	NR	NR [5276842] (imputed)	N
588	chr6_qbl_hap6	422151	422152	rs3130725	27668658	Iotchkova V	2016-11-01	Nat Genet	Discovery and refinement of genetic loci associated with cardiometabolic risk using dense imputation maps.	Cardiometabolic and hematological traits	up to 35,981 European ancestry individuals	up to 102,505 European ancestry individuals	6p22.1	ZNF311	rs3130725-G		3E-26	(WBC)	0.008	[0.006-0.01] unit decrease	Affymetrix, Illumina [17000000] (imputed)	N
588	chr6_qbl_hap6	429903	429904	rs62405961	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	OR2J2	rs62405961-A	NR	2E-8		0.0707669	[0.046-0.095] unit decrease	Affymetrix [321016] (imputed)	N
588	chr6_qbl_hap6	433684	433685	rs3129137	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129137-?		3E-8	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
588	chr6_qbl_hap6	437050	437051	rs4947263	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p22.1	NR	rs4947263-T	0.1178	3E-12		0.0127	[0.0092-0.0162] unit decrease	NR [7666894] (imputed)	N
588	chr6_qbl_hap6	439205	439210	rs369812099	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	6p22.1		rs369812099-T	NR	3E-8		0.0145	[0.0094-0.0196] unit increase	Affymetrix, Illumina [20535873] (imputed)	N
588	chr6_qbl_hap6	441723	441724	rs3129151	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	NR	rs3129151-?	NR	7E-8		5.388	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
588	chr6_qbl_hap6	442357	442358	rs3130740	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3130740-?		4E-9	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
588	chr6_qbl_hap6	445151	445152	rs3129157	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p22.1	OR2J2	rs3129157-A		3E-33		0.068	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
588	chr6_qbl_hap6	447948	447949	rs9257566	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	6p22.1	NR	rs9257566-?	NR	7E-30		1.2277772	[1.19-1.26]	Affymetrix, Illumina [12447948] (imputed)	N
588	chr6_qbl_hap6	449039	449040	rs9295795	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	6p22.1		rs9295795-T	0.94311	2E-8		0.026	[0.016-0.036] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
588	chr6_qbl_hap6	451121	451122	rs186983332	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p22.1	NR	rs186983332-?	NR	7E-6		0.2003	[0.11-0.29] unit decrease	Illumina [at least 560000] (imputed)	N
588	chr6_qbl_hap6	451821	451822	rs114503016	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p22.1		rs114503016-C	0.986	4E-13				Affymetrix [10369434] (imputed)	N
588	chr6_qbl_hap6	451821	451822	rs114503016	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p22.1		rs114503016-C	0.986	3E-16				Affymetrix [10369434] (imputed)	N
588	chr6_qbl_hap6	452858	452859	rs3116816	32595297	Kweon K	2018-04-01	Soa Chongsonyon Chongsin Uihak	Genome-Wide Analysis Reveals Four Novel Loci for Attention-Deficit Hyperactivity Disorder in Korean Youths.	Attention deficit hyperactivity disorder (inattention symptoms)	27 Korean ancestry child sibling pairs	NA	6p22.1	OR2J2, OR14J1	rs3116816-A	0.398	2E-7				Affymetrix [432921]	N
588	chr6_qbl_hap6	456575	456576	rs3130746	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p22.1	NR	rs3130746-?	NR	3E-6		0.1783	[0.1-0.25] unit increase	Illumina [at least 560000] (imputed)	N
588	chr6_qbl_hap6	459169	459170	rs3129171	32358547	Persyn E	2020-05-01	Nat Commun	Genome-wide association study of MRI markers of cerebral small vessel disease in 42,310 participants.	White matter integrity (fractional anisotropy)	17,663 European ancestry individuals	NA	6p22.1	ZFP57a, OR2J2, OR2H4P, XXbac-BPG308J9.3	rs3129171-A	0.242404	2E-9		0.294752	[0.2-0.39] unit increase	Affymetrix [NR] (imputed)	N
588	chr6_qbl_hap6	459169	459170	rs3129171	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129171-?		3E-9	(Retrolenticular part of internal capsule)			NR [8955960] (imputed)	N
588	chr6_qbl_hap6	459169	459170	rs3129171	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129171-?		3E-9	(Anterior corona radiata)			NR [8955960] (imputed)	N
588	chr6_qbl_hap6	459169	459170	rs3129171	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129171-?		2E-11	(Average across all tracts)			NR [8955960] (imputed)	N
588	chr6_qbl_hap6	459169	459170	rs3129171	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129171-?		9E-9	(Anterior corona radiata)			NR [8955960] (imputed)	N
588	chr6_qbl_hap6	459169	459170	rs3129171	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129171-?		4E-10	(Average across all tracts)			NR [8955960] (imputed)	N
588	chr6_qbl_hap6	459169	459170	rs3129171	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129171-?		2E-8	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
588	chr6_qbl_hap6	462003	462004	rs185008237	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	6p22.1	NR	rs185008237-?	NR	4E-6		0.0077326	[0.0045-0.011] unit increase	Affymetrix [805426] (imputed)	N
588	chr6_qbl_hap6	468479	468480	rs114224598	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling miserable	376,097 European ancestry individuals	NA	6p22.1	NR	rs114224598-A	0.0456381	3E-8		5.52	z score increase	NR [10847151] (imputed)	N
588	chr6_qbl_hap6	468479	468480	rs114224598	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p22.1	NR	rs114224598-?	NR	6E-9		0.175	[0.12-0.23] unit decrease	Illumina [at least 560000] (imputed)	N
588	chr6_qbl_hap6	483503	483504	rs139598127	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p22.1	NR	rs139598127-A	0.01045	2E-8	(SBDS)	0.06239	NR unit increase	Illumina [1671387] (imputed)	N
588	chr6_qbl_hap6	484162	484163	rs9257616	24047820	St Pourcain B	2013-09-18	Mol Autism	Common variation contributes to the genetic architecture of social communication traits.	Social communication problems	5,584 European ancestry children	1,364 European ancestry children	6p22.1	OR2J2, TRIM27, ZNF311, OR2W1, OR2B3, LOC651503, OR214J1, OR5V1, OR12D3, OR2J3	rs9257616-G	0.56	3E-7		0.093	[0.058-0.128] unit increase	Illumina [~ 2500000] (imputed)	N
588	chr6_qbl_hap6	509695	509696	rs3117342	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Cognitive traits (MTAG)	331,679 British ancestry individuals	NA	6p22.1		rs3117342-?	NR	2E-12				NR [7857346] (imputed)	N
588	chr6_qbl_hap6	510121	510122	rs3130820	29483656	Pardinas AF	2018-02-26	Nat Genet	Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.	Schizophrenia	40,675 European ancestry cases, 64,643 European ancestry controls	1,651 European ancestry cases, 4,111 cases, 142,717 European ancestry controls, 11,507 controls	6p22.1	xMHC	rs3130820-?	NR	2E-44		1.281	[1.25-1.32]	Illumina [8000000] (imputed)	N
588	chr6_qbl_hap6	514008	514009	rs3117340	30271922	Clifton EAD	2018-05-03	Commun Biol	Genome-wide association study for risk taking propensity indicates shared pathways with body mass index.	Smoking status (ever vs never smokers)	207,229 European ancestry ever smoker cases, 243,177 European ancestry never smoker controls	NA	6p22.1	NR	rs3117340-G	0.622344	9E-7		0.0051953	[0.0031-0.0073] unit increase	Affymetrix [7736308] (imputed)	N
588	chr6_qbl_hap6	514008	514009	rs3117340	30271922	Clifton EAD	2018-05-03	Commun Biol	Genome-wide association study for risk taking propensity indicates shared pathways with body mass index.	Self-reported risk-taking behaviour	113,882 European ancestry cases, 322,354 European ancestry controls	NA	6p22.1	OR14J1	rs3117340-G	0.62	7E-9		1.024	[1.016-1.033]	Affymetrix [7736308] (imputed)	N
588	chr6_qbl_hap6	514008	514009	rs3117340	30181555	Strawbridge RJ	2018-09-04	Transl Psychiatry	Genetics of self-reported risk-taking behaviour, trans-ethnic consistency and relevance to brain gene expression.	Self-reported risk-taking behaviour	83,677 British ancestry cases, 244,662 British ancestry controls	2,764 South Asian ancestry cases, 3,139 African Caribbean ancestry cases, 16,169 European ancestry cases, 3,866 mixed ancestry cases, 4,267 South Asian ancestry controls, 4,341 African Caribbean ancestry controls, 31,814 European ancestry controls, 5,988 mixed ancestry controls	6p22.1	NR	rs3117340-T	0.38	1E-8		0.03	[0.02-0.04] unit decrease	Affymetrix [NR] (imputed)	N
588	chr6_qbl_hap6	516047	516048	rs113711385	32227112	Lee MA	2020-03-30	Hum Mol Genet	Common variation at 16p11.2 is associated with glycosuria in pregnancy: Findings from a genome-wide association study in European women.	Glycosuria in pregnancy (offspring genotype effect)	747 European ancestry cases, 2,991 European ancestry controls	NA	6p22.1	NR	rs113711385-C	0.018433461	2E-9		3.6226652	[3.201361247-4.043969167]	Illumina [9873828] (imputed)	N
588	chr6_qbl_hap6	520926	520927	rs3117334	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	6p22.1	NR	rs3117334-T	0.501	7E-9		0.00785988	[0.0052-0.0105] unit increase	NR [~ 9732723] (imputed)	N
590	chr6_qbl_hap6	690266	690267	rs202217993	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Gynecologic disease	7,975 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs202217993-?		1E-8		1.18	[1.11-1.25]	Illumina [7645193] (imputed)	N
590	chr6_qbl_hap6	690266	690267	rs202217993	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Gynecologic disease	7,315 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs202217993-?		2E-9				Illumina [7645193] (imputed)	N
590	chr6_qbl_hap6	690293	690294	rs16894878	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	6p22.1	OR12D1P, OR11A1	rs16894878-A	0.001	1E-6		34.08	[3.52-329.69]	Illumina [1556551]	N
590	chr6_qbl_hap6	700161	700162	rs3128851	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	OR5V1, OR11A1	rs3128851-T	NR	9E-12		0.0207103	[0.015-0.027] unit decrease	Affymetrix [321016] (imputed)	N
590	chr6_qbl_hap6	702225	702226	rs3117191	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	6p22.1	Intergenic	rs3117191-T	NR	2E-6		0.022413	[0.013-0.032] unit decrease	Illumina [13520550] (imputed)	N
590	chr6_qbl_hap6	709175	709176	rs55740552	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p22.1	NR	rs55740552-?	NR	1E-10		0.1637	[0.11-0.21] unit decrease	Illumina [at least 560000] (imputed)	N
590	chr6_qbl_hap6	711377	711378	rs17177632	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	6p22.1		rs17177632-?	NR	5E-8				Affymetrix [NR] (imputed)	N
590	chr6_qbl_hap6	711377	711378	rs17177632	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p22.1		rs17177632-A	0.988	2E-8				Affymetrix [10369434] (imputed)	N
590	chr6_qbl_hap6	716290	716291	rs2023463	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in diabetes	70,762 European ancestry individuals, 20,967 African American individuals	NA	6p22.1	6M1-18	rs2023463-T	0.092	1E-11		1.01	[0.72-1.3] unit decrease	Affymetrix [NR] (imputed)	N
590	chr6_qbl_hap6	718751	718752	rs2523443	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p22.1	NR	rs2523443-A	0.1188	1E-12		0.013	[0.0095-0.0165] unit decrease	NR [7666894] (imputed)	N
590	chr6_qbl_hap6	735457	735458	rs2143668	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	6p22.1	OR2H1	rs2143668-A	0.8962	1E-7	(EA)	0.0033	[0.0021-0.0045] unit increase	Affymetrix [NR] (imputed)	N
590	chr6_qbl_hap6	735457	735458	rs2143668	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	6p22.1	OR2H1	rs2143668-A	0.896	1E-9		0.0033	[0.0021-0.0045] unit increase	Affymetrix [NR] (imputed)	N
590	chr6_qbl_hap6	737698	737699	rs4713226	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	UBDP1	rs4713226-A	NR	5E-10		0.0303439	[0.021-0.04] unit decrease	Affymetrix [321016] (imputed)	N
590	chr6_qbl_hap6	737698	737699	rs4713226	22610502	Kennedy RB	2012-05-19	Hum Genet	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IFN-alpha)	Up to 512 European ancestry individuals, up to 199 African American individuals	NA	6p22.1	OR2H1	rs4713226-A		2E-8	(AA)			Illumina [NR]	N
590	chr6_qbl_hap6	746259	746260	rs77454196	33002439	Jin G	2020-10-01	Lancet Oncol	Genetic risk, incident gastric cancer, and healthy lifestyle: a meta-analysis of genome-wide association studies and prospective cohort study.	Gastric cancer	10,254 Han Chinese ancestry cases, 10,914 Han Chinese ancestry controls	NA	6p22.1	NR	rs77454196-A	0.05	3E-6		0.78	NR	Affymetrix, Illumina [6957974] (imputed)	N
590	chr6_qbl_hap6	748986	748987	rs72500877	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	349,856 European ancestry individuals, 91,908 East Asian ancestry individuals	NA	6p22.1		rs72500877-T	NR	2E-9		0.0296	[0.02-0.039] unit increase	Affymetrix, Illumina [20529536] (imputed)	N
590	chr6_qbl_hap6	761526	761527	rs1233493	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs1233493-?		1E-8	(Superior corona radiata)			NR [8955960] (imputed)	N
590	chr6_qbl_hap6	761526	761527	rs1233493	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs1233493-?		3E-9	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
590	chr6_qbl_hap6	761526	761527	rs1233493	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in non-diabetics	152,624 European ancestry individuals, 36,369 African American individuals	NA	6p22.1	MAS1L	rs1233493-A	0.89	9E-9		0.481	[0.32-0.65] unit increase	Affymetrix [NR] (imputed)	N
590	chr6_qbl_hap6	765015	765016	rs1233491	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p22.1	MAS1L, LOC729653	rs1233491-C	0.23	1E-20				Illumina [118177]	N
590	chr6_qbl_hap6	765015	765016	rs1233491	25827949	Kunz M	2015-05-04	Exp Dermatol	Genome-wide association study identifies new susceptibility loci for cutaneous lupus erythematosus.	Cutaneous lupus erythematosus	151 European ancestry cases, 1,288 European ancestry controls	219 European ancestry cases, 262 European ancestry controls	6p22.1	MAS1L	rs1233491-C	0.088	8E-10		2.2	[1.58-3.08]	Affymetrix [906600]	N
590	chr6_qbl_hap6	773492	773493	rs1233485	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p22.1		rs1233485-T	0.731	7E-12				Affymetrix [10369434] (imputed)	N
590	chr6_qbl_hap6	774269	774270	rs3131019	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	6p22.1		rs3131019-?	NR	5E-8				Affymetrix [NR] (imputed)	N
590	chr6_qbl_hap6	780698	780699	rs1233480	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p22.1	NR	rs1233480-T	0.1095	5E-8	(EA)	0.0586	[0.037-0.08] unit decrease	Illumina [~ 11800000] (imputed)	N
590	chr6_qbl_hap6	783508	783509	rs385816	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p22.1	NR	rs385816-?	NR	5E-7		0.0742	[0.045-0.103] unit increase	Illumina [at least 560000] (imputed)	N
591	chr6_qbl_hap6	790573	790574	rs2523430	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p22.1		rs2523430-G	0.513	3E-9				Affymetrix [10369434] (imputed)	N
591	chr6_qbl_hap6	791259	791260	rs12210150	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	153,512 East Asian ancestry individuals	NA	6p22.1		rs12210150-T	0.038389	1E-12		0.0584816	[0.042-0.075] unit increase	Illumina [13479135] (imputed)	N
591	chr6_qbl_hap6	813920	813921	rs362538	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	6p22.1		rs362538-G	0.902	2E-109		0.4	[-0.44--0.36] % decrease	Affymetrix [NR] (imputed)	N
591	chr6_qbl_hap6	813920	813921	rs362538	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular hemoglobin	20,714 Amish, White ancestry individuals, 447 Asian ancestry individuals, 11,246 Black individuals, 13,834 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	6p22.1		rs362538-C	NR	3E-10		0.2	[0.14-0.26] unit increase	Illumina [94681438]	N
591	chr6_qbl_hap6	819094	819095	rs3094575	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	OR2I1P	rs3094575-T	NR	2E-8		0.0185304	[0.012-0.025] unit decrease	Affymetrix [321016] (imputed)	N
591	chr6_qbl_hap6	823142	823143	rs453658	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	121,047 East Asian ancestry individuals	NA	6p22.1	NR	rs453658-G	0.306783	4E-12		0.030549	[0.022-0.039] SD units decrease	Affymetrix, Illumina [16286195] (imputed)	N
591	chr6_qbl_hap6	824193	824194	rs16895057	23456168	Hao Y	2013-03-03	Hum Genet	Genome-wide association study in Han Chinese identifies three novel loci for human height.	Height	6,534 Han Chinese ancestry individuals	1,881 Han Chinese ancestry individuals from 637 families	6p22.1	OR2I1P	rs16895057-T	0.95	3E-6		0.153	[0.088-0.218] unit increase	Affymetrix [1532051] (imputed)	N
591	chr6_qbl_hap6	824635	824636	rs11724	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	6p22.1		rs11724-G	0.692447	2E-8		0.0220867	[0.014-0.03] unit increase	Illumina [13476299] (imputed)	N
591	chr6_qbl_hap6	826993	826994	rs8337	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p22.1	UBD	rs8337-C		1E-19		0.022	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
591	chr6_qbl_hap6	829695	829696	rs11970475	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	6p22.1	UBD	rs11970475-A	0.19	2E-24		0.07	[0.054-0.086] unit increase	Affymetrix, Illumina [2704730] (imputed)	N
591	chr6_qbl_hap6	834262	834263	rs422878	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	GABBR1	rs422878-T	NR	1E-8		0.0205792	[0.014-0.028] unit decrease	Affymetrix [321016] (imputed)	N
591	chr6_qbl_hap6	834262	834263	rs422878	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	6p22.1	UBD, OR2H2	rs422878-C	0.81	1E-8		5.72	z-score increase	Affymetrix [4311822] (imputed)	N
591	chr6_qbl_hap6	834292	834293	rs115070292	27922604	Yu H	2016-12-06	Mol Psychiatry	Common variants on 2p16.1, 6p22.1 and 10q24.32 are associated with schizophrenia in Han Chinese population.	Schizophrenia	4,384 Han Chinese ancestry cases and 5,770 Han Chinese ancestry controls	4,339 Han Chinese ancestry cases and 7,043 Han Chinese ancestry controls	6p22.1	GABBR1	rs115070292-?		5E-10		1.3	[1.22-1.38]	Illumina [at least 473583] (imputed)	N
591	chr6_qbl_hap6	837933	837934	rs413082	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	GABBR1	rs413082-A	NR	3E-8		0.0199613	[0.013-0.027] unit decrease	Affymetrix [321016] (imputed)	N
591	chr6_qbl_hap6	841539	841540	rs142818680	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mumps	31,227 European ancestry cases, 54,153 European ancestry controls	NA	6p22.1	NR	rs142818680-?	NR	7E-12		0.5892	[0.42-0.76] unit decrease	Illumina [at least 560000] (imputed)	N
591	chr6_qbl_hap6	843095	843096	rs3025652	31272903	Sunadome H	2019-07-01	Allergol Int	Correlation between eosinophil count, its genetic background and body mass index: The Nagahama Study.	Eosinophil counts	4,650 East Asian ancestry individuals	NA	6p22.1	NR	rs3025652-A	0.23	4E-7		0.1237	NR unit increase	Illumina [103680] (imputed)	N
591	chr6_qbl_hap6	850129	850130	rs1233396	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in HDL	115,082 European ancestry individuals	NA	6p22.1		rs1233396-G	0.861673	7E-10		0.0329165	[0.022-0.043] unit increase	NR [11722792] (imputed)	N
591	chr6_qbl_hap6	850129	850130	rs1233396	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium HDL	115,082 European ancestry individuals	NA	6p22.1		rs1233396-G	0.861673	3E-9		0.0327783	[0.022-0.044] unit increase	NR [11722792] (imputed)	N
591	chr6_qbl_hap6	851419	851420	rs926552	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	6p22.1	NA	rs926552-G		4E-10		0.0184243	[0.013-0.024] unit increase	Illumina [13288253] (imputed)	N
591	chr6_qbl_hap6	851419	851420	rs926552	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Major depressive disorder (lifetime)	16,301 British ancestry cases, 50,870 British ancestry controls	NA	6p22.1	NR	rs926552-G	0.86	4E-8		1.1074197	[1.07-1.14]	NR [5276842] (imputed)	N
591	chr6_qbl_hap6	851419	851420	rs926552	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking initiation (ever regular vs never regular)	up to 433,216 European ancestry individuals	NA	6p22.1	SNORD32B	rs926552-A	0.134	1E-8		0.0181	[0.012-0.024] unit decrease	Illumina [~ 250000] (imputed)	N
591	chr6_qbl_hap6	851419	851420	rs926552	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Diastolic blood pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	154,543 European ancestry individuals, 26,183 South Asian ancestry individuals	6p22.1	SNORD32B	rs926552-T	0.111	7E-8		0.26	[0.16-0.36] unit decrease	Illumina [247039]	N
591	chr6_qbl_hap6	852983	852984	rs1233393	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p22.1	NR	rs1233393-G	0.12	3E-7		1.13	[1.08-1.18]	Affymetrix [9886854] (imputed)	N
591	chr6_qbl_hap6	852983	852984	rs1233393	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p22.1	NR	rs1233393-G	0.12	2E-11			[NR]	Affymetrix [9886854] (imputed)	N
591	chr6_qbl_hap6	852983	852984	rs1233393	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p22.1	NR	rs1233393-G	0.12	2E-9		1.11	[1.07-1.15]	Affymetrix [9886854] (imputed)	N
591	chr6_qbl_hap6	852983	852984	rs1233393	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p22.1	NR	rs1233393-G	0.12	3E-11			[NR]	Affymetrix [9886854] (imputed)	N
591	chr6_qbl_hap6	852983	852984	rs1233393	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in non-current smokers	16,488 European ancestry cases, 169,688 European ancestry controls	NA	6p22.1	NR	rs1233393-G	0.12	2E-9		1.11	[1.07-1.15]	Affymetrix [9886854] (imputed)	N
591	chr6_qbl_hap6	852983	852984	rs1233393	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in never smokers	8,631 European ancestry cases, 120,544 European ancestry controls	NA	6p22.1	NR	rs1233393-G	0.12	2E-7		1.13	[1.08-1.18]	Affymetrix [9886854] (imputed)	N
591	chr6_qbl_hap6	852983	852984	rs1233393	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in ever smokers	12,446 European ancestry cases, 59,145 European ancestry controls	NA	6p22.1	NR	rs1233393-G	0.12	3E-6		1.11	[1.06-1.16]	Affymetrix [9886854] (imputed)	N
591	chr6_qbl_hap6	852983	852984	rs1233393	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p22.1	NR	rs1233393-G	0.1223	8E-13		0.0129	[0.0094-0.0164] unit decrease	NR [7666894] (imputed)	N
591	chr6_qbl_hap6	854746	854747	rs12524535	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Experiencing mood swings	373,733 European ancestry individuals	NA	6p22.1	TRIM27	rs12524535-A	0.0690112	8E-9		5.77	z score decrease	NR [10847151] (imputed)	N
591	chr6_qbl_hap6	859108	859109	rs2235698	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6p22.1		rs2235698-?	NR	2E-7		0.935071	[0.91-0.96]	NR [685523]	N
591	chr6_qbl_hap6	859108	859109	rs2235698	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	6p22.1	OR2H2	rs2235698-G	0.23	2E-10		6.36	z-score increase	Affymetrix [4312306] (imputed)	N
591	chr6_qbl_hap6	863810	863811	rs3095274	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p22.1		rs3095274-A	0.295	1E-10				Affymetrix [10369434] (imputed)	N
591	chr6_qbl_hap6	866397	866398	rs17508548	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	6p22.1	NR	rs17508548-?	NR	1E-8		0.02016	[0.013-0.027] unit increase	Affymetrix [10847151] (imputed)	N
591	chr6_qbl_hap6	868092	868093	rs56020557	28440896	Yin X	2017-04-25	Am J Med Genet B Neuropsychiatr Genet	Genome-wide meta-analysis identifies a novel susceptibility signal at CACNA2D3 for nicotine dependence.	Nicotine dependence	7,297 European ancestry cases, 5,577 European ancestry controls, 918 European ancestry whole genome sequenced cases, 921 European ancestry whole genome sequenced controls, African American cases, 1,500 African American controls	NA	6p22.1	GABBR1	rs56020557-T		5E-6	(EA)	0.05	[0.03-0.07] unit increase	Illumina [at least 3251541] (imputed)	N
591	chr6_qbl_hap6	868703	868704	rs28893517	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	6p22.1	NR	rs28893517-G	NR	5E-10		0.02848	[0.019-0.037] unit increase	Affymetrix [10847151] (imputed)	N
591	chr6_qbl_hap6	869412	869413	rs28986304	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	6p22.1	NR	rs28986304-T	NR	3E-9		5.932	z score decrease	Affymetrix [10847151] (imputed)	N
591	chr6_qbl_hap6	869412	869413	rs28986304	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	6p22.1	TRIM27	rs28986304-T	0.126444	8E-10		6.14	z score decrease	NR [10847151] (imputed)	N
591	chr6_qbl_hap6	870645	870646	rs28986306	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Depression	at least 5,919 European ancestry cases, at least 130,691 European ancestry controls	634,037 European ancestry cases, 1,308,690 European ancestry controls	6p22.1	GABBR1	rs28986306-C	0.0507	2E-9		0.02608803	[0.016-0.036] unit decrease	NR [9417325] (imputed)	N
591	chr6_qbl_hap6	872375	872376	rs362517	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	GABBR1	rs362517-A	NR	1E-10		0.0398451	[0.028-0.052] unit decrease	Affymetrix [321016] (imputed)	N
591	chr6_qbl_hap6	873646	873647	rs3025642	30172743	Liang X	2018-08-30	Bone	Assessing the genetic correlations between early growth parameters and bone mineral density: A polygenic risk score analysis.	Ulna and radius bone mineral density	2,286 European ancestry individuals	NA	6p22.1	GABBR1	rs3025642-?	NR	8E-7				Affymetrix [753382]	N
591	chr6_qbl_hap6	874171	874172	rs2267633	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	6p22.1	intergenic	rs2267633-A	0.87355	1E-9		6.079	z score decrease	Illumina [18485882] (imputed)	N
591	chr6_qbl_hap6	878735	878736	rs740883	30804558	Grove J	2019-02-25	Nat Genet	Identification of common genetic risk variants for autism spectrum disorder.	Autism spectrum disorder	18,381 European ancestry cases, 27,969 European ancestry controls	2,119 European ancestry cases, 142,379 European ancestry controls	6p22.1	Intergenic	rs740883-T	0.088	1E-6		1.1160713	[NR]	Illumina [9112387] (imputed)	N
591	chr6_qbl_hap6	883321	883322	rs41286287	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	6p22.1	NR	rs41286287-A	NR	2E-8		5.59	z score increase	Affymetrix [10847151] (imputed)	N
591	chr6_qbl_hap6	883321	883322	rs41286287	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling miserable	376,097 European ancestry individuals	NA	6p22.1	TRIM27	rs41286287-A	0.0707157	1E-8		5.72	z score increase	NR [10847151] (imputed)	N
591	chr6_qbl_hap6	883766	883767	rs29253	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	GABBR1	rs29253-G	NR	3E-12		0.0329464	[0.024-0.042] unit decrease	Affymetrix [321016] (imputed)	N
591	chr6_qbl_hap6	897596	897597	rs41291770	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	145,648 East Asian ancestry individuals	NA	6p22.1	NR	rs41291770-T	0.792877	4E-11		0.030339	[0.021-0.039] SD units decrease	Affymetrix, Illumina [16710488] (imputed)	N
591	chr6_qbl_hap6	899573	899574	rs143229677	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	6p22.1	GABBR1	rs143229677-A	0.0035	3E-13		0.2309051	[0.17-0.29] unit increase	Affymetrix [~ 2500000] (imputed)	N
591	chr6_qbl_hap6	905259	905260	rs62392942	28440896	Yin X	2017-04-25	Am J Med Genet B Neuropsychiatr Genet	Genome-wide meta-analysis identifies a novel susceptibility signal at CACNA2D3 for nicotine dependence.	Nicotine dependence	7,297 European ancestry cases, 5,577 European ancestry controls, 918 European ancestry whole genome sequenced cases, 921 European ancestry whole genome sequenced controls, African American cases, 1,500 African American controls	NA	6p22.1	GABBR1	rs62392942-T		1E-6		0.06	[0.04-0.08] unit decrease	Illumina [at least 3251541] (imputed)	N
591	chr6_qbl_hap6	906833	906834	rs111508444	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p22.1	NR	rs111508444-A	0.945	2E-19		1.522	[1.43-1.61]	Illumina [11270530] (imputed)	N
591	chr6_qbl_hap6	910366	910367	rs3095267	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine without aura	7,107 European ancestry cases, 69,427 European ancestry controls	NA	6p22.1	intergenic	rs3095267-?	0.81	9E-6		1.12	[1.06-1.18]	Affymetrix, Illumina [~ 2300000] (imputed)	N
591	chr6_qbl_hap6	910421	910422	rs3131856	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical thickness (MOSTest)	26,502 European ancestry individuals	NA	6p22.1	RALGPS2, ANGPTL1	rs3131856-?		2E-10				NR [7428630] (imputed)	N
591	chr6_qbl_hap6	910421	910422	rs3131856	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	6p22.1	LRRC16A, SCGN, SLC17A4, SLC17A1, SLC17A3, SLC17A2, TRIM38, HIST1H1A, HIST1H3A, HIST1H4A, HIST1H4B, HIST1H3B, HIST1H2AB, HIST1H2BB, HIST1H3C, HIST1H1C, HFE, HIST1H2BC, HIST1H2AC, HIST1H2BD, HIST1H2BE, HIST1H4D, HIST1H3D, HIST1H2AD, HIST1H2BF, HIST1H4E, HIST1H3G, HIST1H2BI, BTN3A2, BTN2A2, BTN3A1, BTN3A3, BTN2A1, BTN1A1, HMGN4, ABT1, ZNF322, HIST1H2BJ, HIST1H2AG, HIST1H2BK, HIST1H4I, HIST1H2AH, POM121L2, ZNF391, ZNF184, HIST1H2BL, HIST1H2AI, HIST1H3H, HIST1H2AJ, HIST1H2BM, HIST1H4J, HIST1H4K, HIST1H2AK, HIST1H2BN, HIST1H2AL, HIST1H1B, HIST1H3I, HIST1H4L, HIST1H3J, HIST1H2AM, HIST1H2BO, OR2B2, OR2B6, ZNF165, ZSCAN16, ZKSCAN8, ZSCAN9, ZKSCAN4, NKAPL, PGBD1, ZSCAN31, ZKSCAN3, ZSCAN12, ZSCAN23, GPX6, SCAND3, TRIM27, C6orf100, ZNF311, OR2W1, OR2B3, OR2J1, OR2J3, OR2J2, OR14J1, OR5V1, OR12D3, OR12D2, OR11A1, OR10C1, OR2H1, MAS1L, UBD, GABBR1, OR2H2	rs3131856-?		7E-16				NR [7428630] (imputed)	N
591	chr6_qbl_hap6	910421	910422	rs3131856	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p22.1	NR	rs3131856-?	NR	1E-7		0.1953	[0.12-0.27] unit decrease	Illumina [at least 560000] (imputed)	N
591	chr6_qbl_hap6	911505	911505	rs75140056	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Platelet count	8,850 African American individuals, 18,949 Hispanic/Latino individuals, 541 Asian ancestry individuals, 603 Native American ancestry individuals, 385 individuals	NA	6p22.1	NR	rs75140056-?	NR	6E-6		2.374875	[1.35-3.4] unit increase	Illumina [30743395] (imputed)	N
591	chr6_qbl_hap6	911505	911505	rs75140056	26805783	Schick UM	2016-01-21	Am J Hum Genet	Genome-wide Association Study of Platelet Count Identifies Ancestry-Specific Loci in Hispanic/Latino Americans.	Platelet count	12,491 Hispanic/Latin American individuals	7,170 Hispanic/Latin American individuals	6p22.1	MOG, GABBR1	rs75140056-C	0.39	1E-9		0.151	[0.10-0.20] unit decrease	Illumina [2232944] (imputed)	N
591	chr6_qbl_hap6	913006	913007	rs9257927	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs9257927-?		1E-8		1.66	[1.39-1.97]	Illumina [7645193] (imputed)	N
591	chr6_qbl_hap6	914742	914743	rs29232	19664746	Tse KP	2009-08-05	Am J Hum Genet	Genome-wide association study reveals multiple nasopharyngeal carcinoma-associated loci within the HLA region at chromosome 6p21.3.	Nasopharyngeal carcinoma	277 Han Chinese ancestry cases, 285 Han Chinese ancestry controls	635 Han Chinese ancestry cases, 1,640 Han Chinese ancestry controls	6p22.1	GABBR1	rs29232-A	0.46	9E-17		1.67	[1.48-1.88]	Illumina [480365]	N
591	chr6_qbl_hap6	915088	915089	rs3117318	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fish- and plant-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	6p22.1	LRRC16A, SCGN, SLC17A4, SLC17A1, SLC17A3, SLC17A2, TRIM38, HIST1H1A, HIST1H3A, HIST1H4A, HIST1H4B, HIST1H3B, HIST1H2AB, HIST1H2BB, HIST1H3C, HIST1H1C, HFE, HIST1H4C, HIST1H1T, HIST1H2BC, HIST1H2AC, HIST1H2BD, HIST1H2BE, HIST1H4D, HIST1H3D, HIST1H2AD, HIST1H2BF, HIST1H4E, HIST1H3G, HIST1H2BI, BTN3A2, BTN2A2, BTN3A1, BTN3A3, BTN2A1, BTN1A1, HMGN4, ABT1, ZNF322, HIST1H2BJ, HIST1H2AG, HIST1H2BK, HIST1H4I, HIST1H2AH, PRSS16, POM121L2, ZNF391, ZNF184, HIST1H2BL, HIST1H2AI, HIST1H3H, HIST1H2AJ, HIST1H2BM, HIST1H4J, HIST1H4K, HIST1H2AK, HIST1H2BN, HIST1H2AL, HIST1H1B, HIST1H3I, HIST1H4L, HIST1H3J, HIST1H2AM, HIST1H2BO, OR2B2, OR2B6, ZNF165, ZSCAN16, ZKSCAN8, ZSCAN9, ZKSCAN4, NKAPL, PGBD1, ZSCAN31, ZKSCAN3, ZSCAN12, ZSCAN23, GPX6, SCAND3, TRIM27, C6orf100, ZNF311, OR2W1, OR2B3, OR2J1, OR2J3, OR2J2, OR14J1, OR5V1, OR12D3, OR12D2, OR11A1, OR10C1, OR2H1, MAS1L, UBD, GABBR1, OR2H2	rs3117318-?	NR	7E-9		0.0168393	[0.011-0.023] unit increase	Affymetrix [25921788] (imputed)	N
591	chr6_qbl_hap6	915192	915193	rs3131854	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p22.1		rs3131854-T	0.213	6E-18				Affymetrix [10369434] (imputed)	N
592	chr6_qbl_hap6	922273	922274	rs188289856	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p22.1	NR	rs188289856-?	NR	6E-8		0.2325	[0.15-0.32] unit increase	Illumina [at least 560000] (imputed)	N
592	chr6_qbl_hap6	925538	925539	rs1233367	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6p22.1	MOG	rs1233367-G	NR	3E-8		0.0181448	[0.012-0.025] unit decrease	Affymetrix [321114] (imputed)	N
592	chr6_qbl_hap6	926633	926634	rs9468569	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p22.1	MOG, ZFP57, ZDHHC20P1	rs9468569-A	0.01203611	1E-16	(EA, Alpha-2-macroglobulin receptor-associated protein)	1.631	[1.25-2.01] unit increase	Affymetrix [509946]	N
592	chr6_qbl_hap6	927430	927431	rs29234	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	6p22.1	Intergenic	rs29234-?	NR	2E-8		2.219	[NR]	Affymetrix [492217] (imputed)	N
592	chr6_qbl_hap6	929638	929639	rs2252711	23284291	Hancock DB	2012-12-20	PLoS Genet	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (smoking interaction)	50,047 European ancestry individuals	NA	6p22.1	MOG	rs2252711-T	NR	4E-7	(FEV1/FVC, Ever-smoking)			NR [~ 2500000] (imputed)	N
592	chr6_qbl_hap6	930266	930267	rs16895223	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	MOG	rs16895223-G	NR	4E-10		0.0263599	[0.018-0.035] unit decrease	Affymetrix [321016] (imputed)	N
592	chr6_qbl_hap6	931476	931477	rs182971160	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p22.1	NR	rs182971160-?	NR	2E-7		0.3024	[0.19-0.42] unit increase	Illumina [at least 560000] (imputed)	N
592	chr6_qbl_hap6	937326	937327	rs3130253	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p22.1	MOG	rs3130253-A		1E-44		0.053	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
592	chr6_qbl_hap6	947658	947659	rs28367493	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p22.1		rs28367493-?	NR	2E-11		0.0217788	[0.016-0.028] unit decrease	Affymetrix [20259828] (imputed)	N
592	chr6_qbl_hap6	949478	949479	rs396660	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	6p22.1	NR	rs396660-?	NR	3E-10	(MIC-A)	0.504823	[0.35-0.66] unit increase	Illumina [11901634] (imputed)	N
592	chr6_qbl_hap6	950178	950179	rs9257953	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	91,908 East Asian ancestry individuals	NA	6p22.1		rs9257953-A	0.223075	3E-9		0.0321111	[0.022-0.043] unit increase	Illumina [13469940] (imputed)	N
592	chr6_qbl_hap6	951027	951028	rs17369215	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	6p22.1	Intergenic	rs17369215-T	0.2278	2E-11	(MTAG)	0.0183	[0.013-0.024] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
592	chr6_qbl_hap6	951432	951433	rs17184549	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	6p22.1	Intergenic	rs17184549-A	0.2165	1E-8	(MTAG)	0.0124	[0.0081-0.0167] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
592	chr6_qbl_hap6	951432	951433	rs17184549	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	6p22.1	Intergenic	rs17184549-A	0.2168	4E-11	(MTAG)	0.0133	[0.0094-0.0172] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
592	chr6_qbl_hap6	952860	952861	rs385492	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Uterine fibroids (MTAG)	5,236 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs385492-?		5E-6		1.0309278	[1.02-1.04]	Illumina [7645193] (imputed)	N
592	chr6_qbl_hap6	952860	952861	rs385492	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p22.1	HCG4, HCG4B, HCG8, HCG9, HLA-A, HLA-F, HLA-F-AS1, HLA-G, HLA-H, HLA-J, IFITM4P, LOC554223, MOG, PPP1R11, RNF39, ZFP57, ZNRD1, ZNRD1-AS1	rs385492-T		4E-9		1.06	[1.04-1.08]	Affymetrix, Illumina [NR]	N
592	chr6_qbl_hap6	952860	952861	rs385492	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	6p22.1	NR	rs385492-T	NR	1E-8		1.06	[NR]	Illumina [7158791] (imputed)	N
592	chr6_qbl_hap6	955514	955515	rs3117292	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	ZFP57	rs3117292-G	NR	4E-12		0.0204333	[0.015-0.026] unit decrease	Affymetrix [321016] (imputed)	N
592	chr6_qbl_hap6	955568	955569	rs9257985	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Gynecologic disease (multivariate analysis)	up to 7,975 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs9257985-?		2E-8	(uterine fibroid, uterine cervical cancer)			Illumina [7645193] (imputed)	N
592	chr6_qbl_hap6	964103	964104	rs3116813	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p22.1	NR	rs3116813-A	0.1026	6E-7	(EA)	0.0553	[0.034-0.077] unit decrease	Illumina [~ 11800000] (imputed)	N
592	chr6_qbl_hap6	964232	964233	rs3116812	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8 on Central Memory CD8+ T cell	2,910 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p22.1		rs3116812-G	0.2977	1E-8		0.1871	[0.12-0.25] unit decrease	Illumina [17945467] (imputed)	N
592	chr6_qbl_hap6	967184	967185	rs3131888	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	1,505 Ashkenazi Jewish founder cases, 2,553 Ashkenazi Jewish founder controls	NA	6p22.1	NR	rs3131888-C	NR	7E-6		1.2820514	[NR]	Illumina [up to 9792010] (imputed)	N
592	chr6_qbl_hap6	968656	968657	rs7764829	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p22.1		rs7764829-A	0.612	4E-25				Affymetrix [10369434] (imputed)	N
592	chr6_qbl_hap6	969006	969007	rs9278250	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6p22.1		rs9278250-C	0.247045	7E-12		0.019422151	[0.014-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
592	chr6_qbl_hap6	972252	972252	rs143539749	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	ZDHHC20P1	rs143539749-ATATATATTC	NR	3E-9		0.0217332	[0.015-0.029] unit decrease	Affymetrix [323858] (imputed)	N
592	chr6_qbl_hap6	972252	972252	rs143539749	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	ZDHHC20P1	rs143539749-ATATATATTC	NR	6E-9		0.0213619	[0.014-0.029] unit decrease	Affymetrix [127266] (imputed)	N
592	chr6_qbl_hap6	972302	972303	rs3116800	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	ZDHHC20P1	rs3116800-T	NR	2E-8		0.01833	[0.012-0.025] unit increase	Affymetrix [321016] (imputed)	N
592	chr6_qbl_hap6	973571	973572	rs3129055	19664746	Tse KP	2009-08-05	Am J Hum Genet	Genome-wide association study reveals multiple nasopharyngeal carcinoma-associated loci within the HLA region at chromosome 6p21.3.	Nasopharyngeal carcinoma	277 Han Chinese ancestry cases, 285 Han Chinese ancestry controls	635 Han Chinese ancestry cases, 1,640 Han Chinese ancestry controls	6p22.1	HLA-F	rs3129055-G	0.31	7E-11		1.51	[1.34-1.71]	Illumina [480365]	N
592	chr6_qbl_hap6	974340	974341	rs9258116	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p22.1		rs9258116-T	0.714	3E-9				Affymetrix [10369434] (imputed)	N
592	chr6_qbl_hap6	974377	974378	rs113510833	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	6p22.1	HLA-F, ZFP57	rs113510833-T	0.10919500000000004	3E-8		0.028025	[0.018-0.038] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
592	chr6_qbl_hap6	975380	975380	rs11276222	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	6p22.1	ZDHHC20P1	rs11276222-A	NR	5E-8		0.0161712	[0.01-0.022] unit increase	Affymetrix [321788] (imputed)	N
592	chr6_qbl_hap6	983324	983325	rs1611371	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p22.1		rs1611371-C	0.228	2E-20				Affymetrix [10369434] (imputed)	N
592	chr6_qbl_hap6	989338	989339	rs2517910	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	HLA-F	rs2517910-A	NR	3E-14		0.0214991	[0.016-0.027] unit increase	Affymetrix [321016] (imputed)	N
592	chr6_qbl_hap6	991389	991390	rs9258177	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	HLA-F	rs9258177-A	NR	3E-10		0.0194677	[0.013-0.026] unit decrease	Affymetrix [321016] (imputed)	N
592	chr6_qbl_hap6	991527	991528	rs9258183	33002439	Jin G	2020-10-01	Lancet Oncol	Genetic risk, incident gastric cancer, and healthy lifestyle: a meta-analysis of genome-wide association studies and prospective cohort study.	Gastric cancer	10,254 Han Chinese ancestry cases, 10,914 Han Chinese ancestry controls	NA	6p22.1	NR	rs9258183-A	0.47	1E-5		1.1	NR	Affymetrix, Illumina [6957974] (imputed)	N
592	chr6_qbl_hap6	991877	991878	rs1362126	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal cancer	978 Austrian ancestry colorectal cancer cases, 636 Austrian ancestry advanced colorectal adenoma cases, 4,294 European ancestry controls	NA	6p22.1	Intergenic	rs1362126-?		1E-7		1.3338668	[NR]	Affymetrix [492217] (imputed)	N
592	chr6_qbl_hap6	991877	991878	rs1362126	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal cancer	978 Austrian ancestry cases, 4,294 European ancestry controls	NA	6p22.1	Intergenic	rs1362126-?		3E-7		1.3908206	[NR]	Affymetrix [492217] (imputed)	N
592	chr6_qbl_hap6	993480	993481	rs2072899	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p22.1	NR	rs2072899-?	NR	7E-18		0.1076	[0.083-0.132] unit increase	Illumina [at least 560000] (imputed)	N
592	chr6_qbl_hap6	996362	996363	rs1628578	34050765	Zhang L	2021-05-29	J Clin Endocrinol Metab	Joint genome-wide association analyses identified 49 novel loci for age at natural menopause.	Age at menopause	181,219 European ancestry individuals, 43,861 East Asian ancestry individuals	NA	6p22.1		rs1628578-A	0.71	3E-13		0.1	unit increase	Illumina [2093892] (imputed)	N
592	chr6_qbl_hap6	996362	996363	rs1628578	34050765	Zhang L	2021-05-29	J Clin Endocrinol Metab	Joint genome-wide association analyses identified 49 novel loci for age at natural menopause.	Age at menopause	181,219 European ancestry individuals	NA	6p22.1		rs1628578-A	0.71	2E-11		0.1	unit increase	Illumina [2398641] (imputed)	N
592	chr6_qbl_hap6	996714	996715	rs2735059	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	6p22.1	NR	rs2735059-A	0.43	3E-13		0.0136	[0.0099-0.0173] unit decrease	NR [NR]	N
592	chr6_qbl_hap6	997517	997518	rs885946	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	6p22.1	NR	rs885946-T	0.186879	3E-10		0.05062379	[0.035-0.066] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
592	chr6_qbl_hap6	998174	998175	rs60581484	33574277	Kawai Y	2021-02-11	NPJ Genom Med	Mapping of susceptible variants for cold medicine-related Stevens-Johnson syndrome by whole-genome resequencing.	Cold medicine-related Stevens-Johnson syndrome/toxic epidermal necrolysis (SJS/TEN) with severe ocular complications	133 Japanese ancestry cases, 418 Japanese ancestry controls	NA	6p22.1		rs60581484-A	0.218	2E-13		4.204		Illumina [7608150]	N
592	chr6_qbl_hap6	1001474	1001475	rs2735054	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p22.1	NR	rs2735054-G	0.413	3E-11	(IFNAR2_of_CD20p)			Illumina [5084123] (imputed)	N
592	chr6_qbl_hap6	1006520	1006521	rs2523393	19525953	De Jager PL	2009-06-14	Nat Genet	Meta-analysis of genome scans and replication identify CD6, IRF8 and TNFRSF1A as new multiple sclerosis susceptibility loci.	Multiple sclerosis	2,624 European ancestry cases, 7,220 European ancestry controls	2,215 European ancestry cases, 2,116 European ancestry controls	6p22.1	HLA-B	rs2523393-A	0.59	1E-17		1.28	[1.18-1.39]	Affymetrix, Illumina [~ 2560000] (imputed)	N
592	chr6_qbl_hap6	1008128	1008129	rs1633096	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	HLA-F-AS1	rs1633096-T	NR	2E-10		0.0225267	[0.016-0.029] unit decrease	Affymetrix [323858] (imputed)	N
592	chr6_qbl_hap6	1008128	1008129	rs1633096	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	HLA-F-AS1	rs1633096-T	NR	3E-10		0.0224137	[0.015-0.029] unit decrease	Affymetrix [127266] (imputed)	N
592	chr6_qbl_hap6	1008128	1008129	rs1633096	29196614	Sud A	2017-12-01	Nat Commun	Genome-wide association study of classical Hodgkin lymphoma identifies key regulators of disease susceptibility.	Mixed cellularity Hodgkin lymphoma	828 European ancestry cases, 14,315 European ancestry controls	135 cases, 3,069 controls	6p22.1	HLA-F	rs1633096-?	NR	3E-23		1.79	[1.59-2.00]	Illumina [> 10000000] (imputed)	N
592	chr6_qbl_hap6	1009770	1009771	rs374787445	31577861	Dai J	2019-10-31	Int J Cancer	Genome-wide association study of INDELs identified four novel susceptibility loci associated with lung cancer risk.	Lung cancer	20,871 European ancestry cases, 15,971 European ancestry controls, 2,331 Chinese ancestry cases, 3,077 Chinese ancestry controls	NA	6p22.1	HLA-F, AS1	rs374787445-D	0.18	7E-9		1.11	[1.07-1.15]	Illumina [484196]	N
592	chr6_qbl_hap6	1013116	1013117	rs9258224	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	HLA-F-AS1, MICE	rs9258224-A	NR	2E-8		0.0282221	[0.018-0.038] unit decrease	Affymetrix [321016] (imputed)	N
592	chr6_qbl_hap6	1024011	1024012	rs9258260	22412388	Kenny EE	2012-03-08	PLoS Genet	A genome-wide scan of Ashkenazi Jewish Crohn's disease suggests novel susceptibility loci.	Crohn's disease	737 Ashkenazi Jewish cases, 2,257  Ashkenazi Jewish controls	971 Ashkenazi Jewish cases, 2,124 Ashkenazi Jewish controls	6p22.1	UBD, HLA-A, HLA-G, HLA-F, MOG, GABBR1, HLA-H	rs9258260-T	0.104	2E-10		1.45	[1.21-1.68]	Affymetrix, Illumina [1060934] (imputed)	N
592	chr6_qbl_hap6	1026846	1026847	rs1633063	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Sleep duration	384,317 European ancestry individuals	NA	6p22.1		rs1633063-T	0.246	3E-9		0.01681	[0.011-0.022] unit decrease	Affymetrix, Illumina [10862567] (imputed)	N
592	chr6_qbl_hap6	1030982	1030983	rs1610633	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p22.1		rs1610633-G	0.752	5E-94				Affymetrix [10369434] (imputed)	N
592	chr6_qbl_hap6	1031645	1031646	rs1611284	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p22.1	XXbac-BPG170G13.31	rs1611284-G	NR	2E-9		0.0170381	[0.011-0.023] unit decrease	Affymetrix [319769] (imputed)	N
592	chr6_qbl_hap6	1031645	1031646	rs1611284	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p22.1	XXbac-BPG170G13.31	rs1611284-G	NR	2E-8		0.015981	[0.01-0.022] unit decrease	Affymetrix [319769] (imputed)	N
592	chr6_qbl_hap6	1033392	1033393	rs1737062	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p22.1		rs1737062-C	0.472	8E-23				Affymetrix [10369434] (imputed)	N
592	chr6_qbl_hap6	1035720	1035721	rs35794939	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antithrombotic agents)	67,653 European ancestry cases, 85,986 European ancestry controls, 54,220 East Asian ancestry cases, 124,506 East Asian ancestry controls	NA	6p22.1		rs35794939-G	NR	2E-11		0.086	[0.061-0.111] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
592	chr6_qbl_hap6	1036339	1036340	rs115635848	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	XXbac-BPG170G13.31	rs115635848-A	NR	9E-11		0.0221196	[0.015-0.029] unit decrease	Affymetrix [323858] (imputed)	N
592	chr6_qbl_hap6	1036339	1036340	rs115635848	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	XXbac-BPG170G13.31	rs115635848-A	NR	8E-11		0.0222067	[0.016-0.029] unit decrease	Affymetrix [127266] (imputed)	N
592	chr6_qbl_hap6	1036586	1036587	rs28986310	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	6p22.1	NR	rs28986310-T	0.0618266	2E-8		5.66	z score increase	NR [10847151] (imputed)	N
592	chr6_qbl_hap6	1036586	1036587	rs28986310	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	6p22.1	intergenic	rs28986310-T	0.061827	1E-7		5.292	z score increase	Illumina [18485882] (imputed)	N
592	chr6_qbl_hap6	1038352	1038353	rs1737030	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mononucleosis	17,457 European ancestry cases, 68,446 European ancestry controls	NA	6p22.1	NR	rs1737030-?	NR	8E-7		0.0636	[0.038-0.089] unit decrease	Illumina [at least 560000] (imputed)	N
592	chr6_qbl_hap6	1039477	1039478	rs1815741	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Non-small cell lung cancer	27,120 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	6p22.1	NR	rs1815741-C	0.92	3E-7		0.86	[0.81-0.91]	NR [NR] (imputed)	N
592	chr6_qbl_hap6	1039477	1039478	rs1815741	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Lung adenocarcinoma	15,581 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	6p22.1	NR	rs1815741-C	0.92	2E-7		0.84	[0.78-0.89]	NR [NR] (imputed)	N
592	chr6_qbl_hap6	1039787	1039788	rs3888722	30169916	Sun Y	2018-08-31	J Eur Acad Dermatol Venereol	Investigation of the Predisposing Factor of Pemphigus and its clinical subtype through a Genome-wide association and next generation sequence analysis.	Pemphigus foliaceus	65 Chinese ancestry cases, 844 Chinese ancestry controls	at least 49 Chinese ancestry cases, up to 996 Chinese ancestry controls	6p22.1	NR	rs3888722-?	NR	7E-9		2.74		Illumina [5546030] (imputed)	N
592	chr6_qbl_hap6	1048539	1048540	rs116603789	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p22.1	NR	rs116603789-?	NR	1E-6		0.2936	[0.17-0.41] unit increase	Illumina [at least 560000] (imputed)	N
593	chr6_qbl_hap6	1049494	1049495	rs1611236	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p22.1		rs1611236-A	0.678	4E-29				Affymetrix [10369434] (imputed)	N
593	chr6_qbl_hap6	1049494	1049495	rs1611236	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p22.1		rs1611236-A	0.678	6E-22				Affymetrix [10369434] (imputed)	N
593	chr6_qbl_hap6	1049494	1049495	rs1611236	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p22.1		rs1611236-A	0.678	7E-31				Affymetrix [10369434] (imputed)	N
593	chr6_qbl_hap6	1049494	1049495	rs1611236	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p22.1		rs1611236-A	0.678	4E-48				Affymetrix [10369434] (imputed)	N
593	chr6_qbl_hap6	1049494	1049495	rs1611236	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p22.1		rs1611236-A	0.678	8E-38				Affymetrix [10369434] (imputed)	N
593	chr6_qbl_hap6	1049494	1049495	rs1611236	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p22.1		rs1611236-A	0.678	1E-16				Affymetrix [10369434] (imputed)	N
593	chr6_qbl_hap6	1051933	1051934	rs9258357	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p22.1		rs9258357-T	0.163	4E-16				Affymetrix [10369434] (imputed)	N
593	chr6_qbl_hap6	1051933	1051934	rs9258357	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	6p22.1		rs9258357-T	0.163	3E-15				Affymetrix [10369434] (imputed)	N
593	chr6_qbl_hap6	1051933	1051934	rs9258357	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p22.1		rs9258357-T	0.163	3E-10				Affymetrix [10369434] (imputed)	N
593	chr6_qbl_hap6	1053612	1053613	rs9258375	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p22.1	NR	rs9258375-G	0.122	1E-12		0.0131	[0.0094-0.0168] unit decrease	NR [7666894] (imputed)	N
593	chr6_qbl_hap6	1053612	1053613	rs9258375	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA	6p22.1	NR	rs9258375-?	NR	8E-6		0.0571	[0.032-0.082] unit decrease	Illumina [at least 560000] (imputed)	N
593	chr6_qbl_hap6	1055198	1055199	rs114802991	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	6p22.1	HLA-G	rs114802991-G	0.993211	8E-9		0.072933	[0.048-0.098] unit decrease	Affymetrix [NR] (imputed)	N
593	chr6_qbl_hap6	1060677	1060678	rs1611207	32752121	Nedoszytko B	2020-07-31	Int J Mol Sci	Results from a Genome-Wide Association Study (GWAS) in Mastocytosis Reveal New Gene Polymorphisms Associated with WHO Subgroups.	Mastocytosis	234 European ancestry cases, 5,606 European ancestry controls	NA	6p22.1	HLA-V	rs1611207-A	0.3807	3E-13		2.105	[1.9-2.31]	Illumina [281811]	N
593	chr6_qbl_hap6	1060677	1060678	rs1611207	32752121	Nedoszytko B	2020-07-31	Int J Mol Sci	Results from a Genome-Wide Association Study (GWAS) in Mastocytosis Reveal New Gene Polymorphisms Associated with WHO Subgroups.	Cutaneous mastocytosis	141 European ancestry cases, 5,606 European ancestry controls	NA	6p22.1	HLA-V	rs1611207-A	0.3807	1E-8		2.01	[-18.0604-22.0804]	Illumina [281811]	N
593	chr6_qbl_hap6	1060830	1060831	rs45479291	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	229 European ancestry cases, 1,088 European ancestry controls	NA	6p22.1	HLA-V	rs45479291-?	NR	2E-16	(conditional on rs12524487and rs62392216)			Illumina [4388215] (imputed)	N
593	chr6_qbl_hap6	1063686	1063687	rs1737002	32771030	Tangtanatakul P	2020-08-08	Arthritis Res Ther	Meta-analysis of genome-wide association study identifies FBN2 as a novel locus associated with systemic lupus erythematosus in Thai population.	Systemic lupus erythematosus	487 Thai cases, 1,606 Thai controls	405 Thai cases, 1,590 Thai controls	6p22.1	HLA-V	rs1737002-A	0.08	2E-6		1.6334	[NR]	Illumina [421909] (imputed)	N
593	chr6_qbl_hap6	1065043	1065044	rs1633005	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p22.1	HCG4, HLA-G	rs1633005-A	0.282	7E-16				Illumina [118177]	N
593	chr6_qbl_hap6	1065658	1065659	rs2523414	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	6p22.1	NR	rs2523414-?	NR	6E-14		7.508	NR z score increase	Illumina [at least 830937] (imputed)	N
593	chr6_qbl_hap6	1068940	1068941	rs1611185	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	HLA-P	rs1611185-C	NR	2E-9		0.0171984	[0.012-0.023] unit decrease	Affymetrix [321016] (imputed)	N
593	chr6_qbl_hap6	1072213	1072214	rs1610660	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	6p22.1	RPL7AP7	rs1610660-G	0.19782	5E-16		0.036476128	[0.028-0.045] unit decrease	Affymetrix [93095623] (imputed)	N
593	chr6_qbl_hap6	1078264	1078265	rs9380141	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p22.1	HCG4, HLA-G	rs9380141-C	0.29	1E-6	(EA)	1.94	[1.48-2.55]	Illumina [up to 547389]	N
593	chr6_qbl_hap6	1081636	1081637	rs1611182	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	6p22.1	MICG	rs1611182-T	NR	4E-9		0.017276	[0.012-0.023] unit increase	Affymetrix [321788] (imputed)	N
593	chr6_qbl_hap6	1082636	1082637	rs1610707	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	6p22.1	MICG	rs1610707-A	0.359635	1E-13		0.02435493	[0.018-0.031] unit increase	Affymetrix [93095623] (imputed)	N
593	chr6_qbl_hap6	1087355	1087356	rs56221809	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	6p22.1		rs56221809-G	0.863227	8E-9		0.033593	[0.022-0.045] unit decrease	NR [11722792] (imputed)	N
593	chr6_qbl_hap6	1089540	1089541	rs201604542	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p22.1		rs201604542-?	NR	6E-13		0.105892	[0.076-0.135] unit increase	Affymetrix [20259828] (imputed)	N
593	chr6_qbl_hap6	1097269	1097270	rs1632941	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	6p22.1	NR	rs1632941-C	0.46	7E-10	(Conditioned on chr6:28129789)	0.015807396	[0.011-0.021] unit decrease	NR [~ 10000000] (imputed)	N
593	chr6_qbl_hap6	1097627	1097628	rs145023077	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs145023077-?		7E-8		1.06	[1.04-1.09]	Illumina [7645193] (imputed)	N
593	chr6_qbl_hap6	1097627	1097628	rs145023077	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs145023077-?		8E-9		1.83	[1.49-2.25]	Illumina [7645193] (imputed)	N
593	chr6_qbl_hap6	1099392	1099393	rs9380142	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	6p22.1	HLA-G	rs9380142-G	0.310253	5E-11		0.0409033	[0.029-0.053] unit decrease	Affymetrix [93095623] (imputed)	N
593	chr6_qbl_hap6	1099879	1099880	rs1611141	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	6p22.1	HCG4P8	rs1611141-G	0.499184	2E-24		0.031040031	[0.025-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
593	chr6_qbl_hap6	1100821	1100822	rs12662618	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	6p22.1	HCG4P8	rs12662618-C	0.1014	5E-15		0.04632551	[0.035-0.058] unit increase	Affymetrix [~ 2500000] (imputed)	N
593	chr6_qbl_hap6	1100821	1100822	rs12662618	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	6p22.1	HCG4P8	rs12662618-C	0.1014	5E-16		0.04778197	[0.036-0.059] unit decrease	Affymetrix [~ 2500000] (imputed)	N
593	chr6_qbl_hap6	1100821	1100822	rs12662618	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	6p22.1	HCG4P8	rs12662618-C	0.1015	1E-17		0.05062162	[0.039-0.062] unit decrease	Affymetrix [~ 2500000] (imputed)	N
593	chr6_qbl_hap6	1103300	1103301	rs9380145	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p22.1	NR	rs9380145-C	0.361	2E-21	(IFNAR2_of_CD20p)			Illumina [5084123] (imputed)	N
593	chr6_qbl_hap6	1107506	1107507	rs407238	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p22.1	HLA-G	rs407238-C	NR	4E-9		0.0168935	[0.011-0.023] unit decrease	Affymetrix [319769] (imputed)	N
593	chr6_qbl_hap6	1107506	1107507	rs407238	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p22.1	HLA-G	rs407238-C	NR	2E-8		0.0162062	[0.011-0.022] unit decrease	Affymetrix [319769] (imputed)	N
593	chr6_qbl_hap6	1107506	1107507	rs407238	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	HLA-G	rs407238-C	NR	7E-12		0.0196596	[0.014-0.025] unit increase	Affymetrix [321016] (imputed)	N
593	chr6_qbl_hap6	1107506	1107507	rs407238	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	23,963 European ancestry cases, 306,942 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	43,254 European ancestry cases, 1,471,118 European ancestry controls	6p22.1	HLA-G	rs407238-C	NR	4E-6		0.0336	unit decrease	Illumina [15409056] (imputed)	N
593	chr6_qbl_hap6	1107998	1107999	rs2517887	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	6p22.1	HLA-G	rs2517887-G	0.793716	2E-9		0.0146864	[0.0099-0.0195] unit decrease	Affymetrix [NR] (imputed)	N
593	chr6_qbl_hap6	1110390	1110392	rs34590927	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	6p22.1	NR	rs34590927-?	NR	4E-7		0.062	[0.038-0.086] unit decrease	Illumina [at least 560000] (imputed)	N
593	chr6_qbl_hap6	1110390	1110392	rs34590927	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	6p22.1	HLA-G, HLA-H	rs34590927-?	NR	4E-7		1.0638298	[1.04-1.09]	Illumina [13754664] (imputed)	N
593	chr6_qbl_hap6	1110463	1110464	rs1476570	30529582	Lu Y	2018-12-06	Gastroenterology	Large-scale Genome-wide Association Study of East Asians Identifies Loci Associated With Risk for Colorectal Cancer.	Colorectal cancer	22,775 East Asian ancestry cases, 47,731 East Asian ancestry controls	NA	6p22.1	HLA-G	rs1476570-A	0.376	7E-9		1.12	[1.08-1.16]	Affymetrix, Illumina [up to 10700000] (imputed)	N
593	chr6_qbl_hap6	1113500	1113501	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small LDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	1E-8		0.0338512	[0.022-0.046] unit decrease	NR [11722792] (imputed)	N
593	chr6_qbl_hap6	1113500	1113501	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium LDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	4E-8		0.0327944	[0.021-0.044] unit decrease	NR [11722792] (imputed)	N
593	chr6_qbl_hap6	1113500	1113501	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large LDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	3E-10		0.0370981	[0.026-0.049] unit decrease	NR [11722792] (imputed)	N
593	chr6_qbl_hap6	1113500	1113501	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in LDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	1E-9		0.0361295	[0.024-0.048] unit decrease	NR [11722792] (imputed)	N
593	chr6_qbl_hap6	1113500	1113501	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in IDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	2E-9		0.0345436	[0.023-0.046] unit decrease	NR [11722792] (imputed)	N
593	chr6_qbl_hap6	1113500	1113501	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol minus HDL-C levels	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	5E-10		0.0368197	[0.025-0.048] unit decrease	NR [11722792] (imputed)	N
593	chr6_qbl_hap6	1113500	1113501	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Remnant cholesterol (non-HDL, non-LDL -cholesterol)	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	3E-9		0.0352589	[0.024-0.047] unit decrease	NR [11722792] (imputed)	N
593	chr6_qbl_hap6	1113500	1113501	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium LDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	1E-8		0.0342027	[0.023-0.046] unit decrease	NR [11722792] (imputed)	N
593	chr6_qbl_hap6	1113500	1113501	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large LDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	4E-10		0.0369858	[0.025-0.049] unit decrease	NR [11722792] (imputed)	N
593	chr6_qbl_hap6	1113500	1113501	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in LDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	9E-10		0.036396	[0.025-0.048] unit decrease	NR [11722792] (imputed)	N
593	chr6_qbl_hap6	1113500	1113501	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in IDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	3E-10		0.0361572	[0.025-0.047] unit decrease	NR [11722792] (imputed)	N
593	chr6_qbl_hap6	1113500	1113501	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	LDL cholesterol levels	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	4E-10		0.0370623	[0.025-0.049] unit decrease	NR [11722792] (imputed)	N
593	chr6_qbl_hap6	1113500	1113501	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	5E-9		0.0347629	[0.023-0.046] unit decrease	NR [11722792] (imputed)	N
593	chr6_qbl_hap6	1113500	1113501	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	1E-8		0.0339143	[0.022-0.046] unit decrease	NR [11722792] (imputed)	N
593	chr6_qbl_hap6	1113500	1113501	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	4E-10		0.0372639	[0.026-0.049] unit decrease	NR [11722792] (imputed)	N
593	chr6_qbl_hap6	1113500	1113501	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large LDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	1E-10		0.0378589	[0.026-0.049] unit decrease	NR [11722792] (imputed)	N
593	chr6_qbl_hap6	1113500	1113501	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in LDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	1E-10		0.0379624	[0.026-0.05] unit decrease	NR [11722792] (imputed)	N
593	chr6_qbl_hap6	1113500	1113501	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small LDL particles	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	3E-8		0.0330855	[0.021-0.045] unit decrease	NR [11722792] (imputed)	N
593	chr6_qbl_hap6	1113500	1113501	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large LDL particles	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	7E-11		0.038717	[0.027-0.05] unit decrease	NR [11722792] (imputed)	N
593	chr6_qbl_hap6	1113500	1113501	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of LDL particles	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	5E-10		0.0371209	[0.025-0.049] unit decrease	NR [11722792] (imputed)	N
593	chr6_qbl_hap6	1113500	1113501	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Clinical LDL cholesterol levels	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	2E-10		0.0378905	[0.026-0.05] unit decrease	NR [11722792] (imputed)	N
593	chr6_qbl_hap6	1113500	1113501	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small LDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	2E-8		0.033257	[0.022-0.045] unit decrease	NR [11722792] (imputed)	N
593	chr6_qbl_hap6	1113500	1113501	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium VLDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	1E-11		0.0401155	[0.029-0.052] unit decrease	NR [11722792] (imputed)	N
593	chr6_qbl_hap6	1113500	1113501	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large LDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	2E-10		0.0376083	[0.026-0.049] unit decrease	NR [11722792] (imputed)	N
593	chr6_qbl_hap6	1113500	1113501	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in VLDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	4E-8		0.0327951	[0.021-0.044] unit decrease	NR [11722792] (imputed)	N
593	chr6_qbl_hap6	1113500	1113501	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in LDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	1E-9		0.0361619	[0.025-0.048] unit decrease	NR [11722792] (imputed)	N
593	chr6_qbl_hap6	1113500	1113501	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in IDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	3E-9		0.0342481	[0.023-0.046] unit decrease	NR [11722792] (imputed)	N
593	chr6_qbl_hap6	1113500	1113501	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	1E-8		0.0330288	[0.022-0.044] unit decrease	NR [11722792] (imputed)	N
593	chr6_qbl_hap6	1113500	1113501	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small LDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	4E-9		0.0352069	[0.024-0.047] unit decrease	NR [11722792] (imputed)	N
593	chr6_qbl_hap6	1113500	1113501	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	8E-11		0.0386497	[0.027-0.05] unit decrease	NR [11722792] (imputed)	N
593	chr6_qbl_hap6	1113500	1113501	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	2E-8		0.0333427	[0.022-0.045] unit decrease	NR [11722792] (imputed)	N
593	chr6_qbl_hap6	1113500	1113501	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large LDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	1E-10		0.0379659	[0.026-0.05] unit decrease	NR [11722792] (imputed)	N
593	chr6_qbl_hap6	1113500	1113501	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in IDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	2E-9		0.0344785	[0.023-0.046] unit decrease	NR [11722792] (imputed)	N
593	chr6_qbl_hap6	1113500	1113501	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein B levels	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	9E-10		0.0364076	[0.025-0.048] unit decrease	NR [11722792] (imputed)	N
593	chr6_qbl_hap6	1116778	1116779	rs2394186	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	6p22.1	NR	rs2394186-G	0.2192	2E-8		0.0271	[0.018-0.037] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
593	chr6_qbl_hap6	1116899	1116900	rs28724990	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total free cholesterol levels	115,082 European ancestry individuals	NA	6p22.1		rs28724990-T	0.844316	4E-9		0.0325566	[0.022-0.043] unit decrease	NR [11722792] (imputed)	N
593	chr6_qbl_hap6	1116899	1116900	rs28724990	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total esterified cholesterol levels	115,082 European ancestry individuals	NA	6p22.1		rs28724990-T	0.844316	2E-8		0.0309173	[0.02-0.042] unit decrease	NR [11722792] (imputed)	N
593	chr6_qbl_hap6	1116899	1116900	rs28724990	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol levels	115,082 European ancestry individuals	NA	6p22.1		rs28724990-T	0.844316	1E-8		0.031549	[0.021-0.042] unit decrease	NR [11722792] (imputed)	N
593	chr6_qbl_hap6	1118192	1118192	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	2E-12		0.0298616	[0.022-0.038] unit increase	NR [11722792] (imputed)	N
593	chr6_qbl_hap6	1118192	1118192	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	2E-12		0.0298616	[0.022-0.038] unit increase	NR [11722792] (imputed)	N
593	chr6_qbl_hap6	1118192	1118192	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	1E-13		0.0318981	[0.023-0.04] unit increase	NR [11722792] (imputed)	N
593	chr6_qbl_hap6	1118192	1118192	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	1E-13		0.0318981	[0.023-0.04] unit increase	NR [11722792] (imputed)	N
593	chr6_qbl_hap6	1118192	1118192	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	2E-11		0.0287582	[0.02-0.037] unit increase	NR [11722792] (imputed)	N
593	chr6_qbl_hap6	1118192	1118192	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	2E-11		0.0287582	[0.02-0.037] unit increase	NR [11722792] (imputed)	N
593	chr6_qbl_hap6	1118192	1118192	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	6E-12		0.0290211	[0.021-0.037] unit increase	NR [11722792] (imputed)	N
593	chr6_qbl_hap6	1118192	1118192	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	6E-12		0.0290211	[0.021-0.037] unit increase	NR [11722792] (imputed)	N
593	chr6_qbl_hap6	1118192	1118192	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of apolipoprotein B to apolipoprotein A1 levels	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	9E-12		0.0295387	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
593	chr6_qbl_hap6	1118192	1118192	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of apolipoprotein B to apolipoprotein A1 levels	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	9E-12		0.0295387	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
593	chr6_qbl_hap6	1118192	1118192	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	2E-12		0.0296171	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
593	chr6_qbl_hap6	1118192	1118192	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	2E-12		0.0296171	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
593	chr6_qbl_hap6	1118192	1118192	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	9E-11		0.0275259	[0.019-0.036] unit increase	NR [11722792] (imputed)	N
593	chr6_qbl_hap6	1118192	1118192	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	9E-11		0.0275259	[0.019-0.036] unit increase	NR [11722792] (imputed)	N
593	chr6_qbl_hap6	1118192	1118192	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	2E-13		0.0307478	[0.023-0.039] unit decrease	NR [11722792] (imputed)	N
593	chr6_qbl_hap6	1118192	1118192	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	2E-13		0.0307478	[0.023-0.039] unit decrease	NR [11722792] (imputed)	N
593	chr6_qbl_hap6	1118192	1118192	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	2E-9		0.0253353	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
593	chr6_qbl_hap6	1118192	1118192	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	2E-9		0.0253353	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
593	chr6_qbl_hap6	1118192	1118192	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small LDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	5E-12		0.0303335	[0.022-0.039] unit decrease	NR [11722792] (imputed)	N
593	chr6_qbl_hap6	1118192	1118192	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small LDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	5E-12		0.0303335	[0.022-0.039] unit decrease	NR [11722792] (imputed)	N
593	chr6_qbl_hap6	1118192	1118192	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in IDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	2E-9		0.0257238	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
593	chr6_qbl_hap6	1118192	1118192	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in IDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	2E-9		0.0257238	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
593	chr6_qbl_hap6	1118192	1118192	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of IDL particles	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	7E-10		0.0268846	[0.018-0.035] unit decrease	NR [11722792] (imputed)	N
593	chr6_qbl_hap6	1118192	1118192	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of IDL particles	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	7E-10		0.0268846	[0.018-0.035] unit decrease	NR [11722792] (imputed)	N
593	chr6_qbl_hap6	1118192	1118192	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	4E-12		0.0285378	[0.02-0.037] unit decrease	NR [11722792] (imputed)	N
593	chr6_qbl_hap6	1118192	1118192	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	4E-12		0.0285378	[0.02-0.037] unit decrease	NR [11722792] (imputed)	N
593	chr6_qbl_hap6	1118192	1118192	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	4E-13		0.0301476	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
593	chr6_qbl_hap6	1118192	1118192	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	4E-13		0.0301476	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
593	chr6_qbl_hap6	1118522	1118523	rs28728979	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	MICF	rs28728979-A	NR	3E-8		0.0362437	[0.023-0.049] unit decrease	Affymetrix [321016] (imputed)	N
593	chr6_qbl_hap6	1119083	1119084	rs2523761	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	NR	rs2523761-?	NR	6E-8		5.432	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
593	chr6_qbl_hap6	1119956	1119957	rs9258593	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6p22.1		rs9258593-?	NR	9E-6		1.05543	[1.03-1.08]	NR [685523]	N
593	chr6_qbl_hap6	1121697	1121698	rs17179234	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MRPL55	5,367 Icelandic ancestry individuals	NA	6p22.1		rs17179234-A	0.1077	3E-55		0.466688	[0.41-0.53] unit increase	Illumina [7506463] (imputed)	N
593	chr6_qbl_hap6	1121963	1121964	rs17185657	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	6p22.1	MICF	rs17185657-T	0.076717	2E-15		0.032850858	[0.025-0.041] unit increase	Affymetrix [93095623] (imputed)	N
593	chr6_qbl_hap6	1122439	1122440	rs9258644	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p22.1		rs9258644-?	NR	3E-17		0.0268138	[0.021-0.033] unit decrease	Affymetrix [20259828] (imputed)	N
593	chr6_qbl_hap6	1122789	1122790	rs58005484	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	6p22.1	MICF	rs58005484-T	0.140864	8E-28		0.035311565	[0.029-0.042] unit increase	Affymetrix [93095623] (imputed)	N
593	chr6_qbl_hap6	1122789	1122790	rs58005484	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	6p22.1	MICF	rs58005484-T	0.140853	1E-24		0.033428524	[0.027-0.04] unit decrease	Affymetrix [93095623] (imputed)	N
593	chr6_qbl_hap6	1122789	1122790	rs58005484	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	6p22.1	MICF	rs58005484-T	0.1409	2E-20		0.04769708	[0.038-0.058] unit increase	Affymetrix [~ 2500000] (imputed)	N
593	chr6_qbl_hap6	1129014	1129015	rs2523822	21570397	Lucena MI	2011-04-12	Gastroenterology	Susceptibility to amoxicillin-clavulanate-induced liver injury is influenced by multiple HLA class I and II alleles.	Drug-induced liver injury (amoxicillin-clavulanate)	201 European ancestry cases, 532 European ancestry controls	NA	6p22.1	HLA-A	rs2523822-?	NR	2E-10		2.3	[1.80-2.90]	Illumina [822927]	N
593	chr6_qbl_hap6	1129326	1129327	rs9258750	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6p22.1		rs9258750-G	0.176259	2E-14		0.023563657	[0.018-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
593	chr6_qbl_hap6	1129607	1129608	rs1611713	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p22.1		rs1611713-A	0.712	2E-64				Affymetrix [10369434] (imputed)	N
593	chr6_qbl_hap6	1129992	1129993	rs1611719	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	6p22.1	HLA-G	rs1611719-G	0.79027	5E-13		0.0174799	[0.013-0.022] unit increase	Affymetrix [NR] (imputed)	N
593	chr6_qbl_hap6	1129992	1129993	rs1611719	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	6p22.1	HLA-G	rs1611719-G	0.790195	1E-14		0.019154	[0.014-0.024] unit increase	Affymetrix [NR] (imputed)	N
593	chr6_qbl_hap6	1132693	1132694	rs2524035	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	6p22.1	intergenic	rs2524035-G	0.8188	3E-23		0.04626543	[0.037-0.055] unit decrease	Affymetrix [~ 2500000] (imputed)	N
593	chr6_qbl_hap6	1133056	1133057	rs1611747	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small LDL	115,082 European ancestry individuals	NA	6p22.1		rs1611747-T	0.604397	4E-10		0.0262493	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
593	chr6_qbl_hap6	1133056	1133057	rs1611747	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p22.1		rs1611747-T	0.604	9E-22				Affymetrix [10369434] (imputed)	N
593	chr6_qbl_hap6	1133207	1133208	rs2517827	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	MICF	rs2517827-A	NR	2E-10		0.0215463	[0.015-0.028] unit decrease	Affymetrix [323858] (imputed)	N
593	chr6_qbl_hap6	1133207	1133208	rs2517827	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	MICF	rs2517827-A	NR	8E-11		0.0219247	[0.015-0.029] unit decrease	Affymetrix [127266] (imputed)	N
593	chr6_qbl_hap6	1133353	1133354	rs34832458	31577861	Dai J	2019-10-31	Int J Cancer	Genome-wide association study of INDELs identified four novel susceptibility loci associated with lung cancer risk.	Lung cancer	20,871 European ancestry cases, 15,971 European ancestry controls, 2,331 Chinese ancestry cases, 3,077 Chinese ancestry controls	NA	6p22.1	HLA-G	rs34832458-T	0.39	1E-9		0.92	[0.89-0.94]	Illumina [484196]	N
593	chr6_qbl_hap6	1133417	1133418	rs3128900	33269293	Kannambath S	2020-10-16	Open Forum Infect Dis	Genome-Wide Association Study Identifies Novel Colony Stimulating Factor 1 Locus Conferring Susceptibility to Cryptococcosis in Human Immunodeficiency Virus-Infected South Africans.	Cryptococcosis in HIV infection	319 South African ancestry cases, 399 South African ancestry controls	NA	6p22.1	HLA-H	rs3128900-?	NR	5E-6		0.9658	[NR]	Illumina [2686126] (imputed)	N
593	chr6_qbl_hap6	1133417	1133418	rs3128900	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6p22.1		rs3128900-T	0.845434	2E-21		0.032471824	[0.026-0.039] unit decrease	Affymetrix [93095623] (imputed)	N
593	chr6_qbl_hap6	1133832	1133833	rs7760545	33574277	Kawai Y	2021-02-11	NPJ Genom Med	Mapping of susceptible variants for cold medicine-related Stevens-Johnson syndrome by whole-genome resequencing.	Cold medicine-related Stevens-Johnson syndrome/toxic epidermal necrolysis (SJS/TEN) with severe ocular complications	133 Japanese ancestry cases, 418 Japanese ancestry controls	NA	6p22.1		rs7760545-A	0.2594	4E-16		4.373		Illumina [7608150]	N
593	chr6_qbl_hap6	1137098	1137099	rs1611637	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	IgM levels	14,442 Icelandic ancestry individuals	2,157 Swedish ancestry individuals	6p22.1	HLA-G	rs1611637-A	0.4554	1E-21		0.11	NR SD units increase	Illumina [21568490] (imputed)	N
593	chr6_qbl_hap6	1137864	1137865	rs885932	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p22.1	NR	rs885932-A	0.190644	2E-12		0.026577342	[0.019-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
593	chr6_qbl_hap6	1140600	1140601	rs2523815	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p22.1	HLA-A	rs2523815-A	0.64	2E-22		1.12	[1.11-1.14]	Illumina [at least 560000] (imputed)	N
593	chr6_qbl_hap6	1141095	1141096	rs3132713	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	6p22.1		rs3132713-A	0.181	2E-27				Affymetrix [10369434] (imputed)	N
593	chr6_qbl_hap6	1141572	1141573	rs56213322	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	6p22.1		rs56213322-A	0.819527	5E-23		0.029193865	[0.023-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
593	chr6_qbl_hap6	1142897	1142898	rs2734963	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Oral cavity and pharyngeal cancer	1,223 European ancestry cases, 410,350 European ancestry controls	NA	6p22.1		rs2734963-T	0.193283	6E-7		1.2753475	NR	Affymetrix [7846216] (imputed)	N
593	chr6_qbl_hap6	1144296	1144297	rs2523809	22075330	Granada M	2011-11-08	J Allergy Clin Immunol	A genome-wide association study of plasma total IgE concentrations in the Framingham Heart Study.	IgE levels	6,819 European ancestry individuals	7,809 European ancestry indivduals	6p22.1	HLA-G	rs2523809-T	NR	4E-8		0.06	[NR] unit increase	Affymetrix [2540223] (imputed)	N
593	chr6_qbl_hap6	1145411	1145412	rs1611579	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6p22.1	HLA-H	rs1611579-C	0.122264	4E-17		0.051560964	[0.04-0.064] unit increase	Affymetrix [93095623] (imputed)	N
593	chr6_qbl_hap6	1145411	1145412	rs1611579	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p22.1	NR	rs1611579-C	0.098	8E-7	(EA)	0.058	[0.035-0.081] unit decrease	Illumina [~ 11800000] (imputed)	N
593	chr6_qbl_hap6	1145518	1145519	rs1611581	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	6p22.1	NR	rs1611581-C	0.682015	5E-8		0.0185265	[0.012-0.025] unit increase	Affymetrix [16577424] (imputed)	N
593	chr6_qbl_hap6	1148128	1148129	rs2523802	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	6p22.1	NR	rs2523802-?	NR	2E-8		0.088	[0.057-0.119] unit decrease	Illumina [at least 560000] (imputed)	N
593	chr6_qbl_hap6	1149260	1149261	rs2734950	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	6p22.1	HLA-H	rs2734950-T	0.402539	6E-12		0.01625928	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
593	chr6_qbl_hap6	1167076	1167077	rs189370103	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	6p22.1	NR	rs189370103-?	NR	8E-6	(Native Hawaiian)	1.0607	[NR] unit increase	Illumina [up to 11892802] (imputed)	N
593	chr6_qbl_hap6	1170648	1170649	rs2517873	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Squamous cell lung carcinoma	8,350 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	6p22.1	NR	rs2517873-A	NR	2E-10		1.23	[1.15-1.31]	NR [NR] (imputed)	N
593	chr6_qbl_hap6	1170648	1170649	rs2517873	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Non-small cell lung cancer	27,120 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	6p22.1	NR	rs2517873-A	NR	5E-11		1.16	[1.11-1.21]	NR [NR] (imputed)	N
593	chr6_qbl_hap6	1170648	1170649	rs2517873	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Lung adenocarcinoma	15,581 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	6p22.1	NR	rs2517873-A	NR	3E-6		1.13	[1.08-1.20]	NR [NR] (imputed)	N
593	chr6_qbl_hap6	1170648	1170649	rs2517873	31326317	Dai J	2019-07-17	Lancet Respir Med	Identification of risk loci and a polygenic risk score for lung cancer: a large-scale prospective cohort study in Chinese populations.	Non-small cell lung cancer	13,327 Chinese ancestry cases, 13,793 European ancestry cases, 13,328 Chinese ancestry controls, 14,027 European ancestry controls	NA	6p22.1	MHC	rs2517873-A	0.145	5E-11		1.16	[1.11-1.21]	Illumina [~ 11000000] (imputed)	N
594	chr6_qbl_hap6	1183897	1183898	rs75460055	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p22.1	NR	rs75460055-T	0.039	5E-18	(conditional)	0.47	[0.3-0.64]	Illumina [11270530] (imputed)	N
594	chr6_qbl_hap6	1185395	1185396	rs1611399	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	HCG4B	rs1611399-C	NR	5E-8		0.0192493	[0.012-0.026] unit decrease	Affymetrix [323858] (imputed)	N
594	chr6_qbl_hap6	1185395	1185396	rs1611399	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	HCG4B	rs1611399-C	NR	4E-8		0.0194622	[0.013-0.026] unit decrease	Affymetrix [127266] (imputed)	N
594	chr6_qbl_hap6	1188220	1188221	rs9259819	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	6p22.1	HLA-J	rs9259819-G	0.5	2E-9		1.036	[1.02-1.05]	Affymetrix, Illumina [8307659] (imputed)	N
594	chr6_qbl_hap6	1190271	1190273	rs148228730	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1b levels	8,243 Finnish ancestry individuals	NA	6p22.1	NR	rs148228730-AAT	NR	9E-6		0.074	[0.041-0.107] SD units increase	NR [10700000] (imputed)	N
594	chr6_qbl_hap6	1191738	1191739	rs389725	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	6p22.1	HCG4B, HLA-U	rs389725-T	0.78328	3E-30		0.03487705	[0.029-0.041] unit decrease	Affymetrix [93095623] (imputed)	N
594	chr6_qbl_hap6	1192725	1192726	rs2975009	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	6p22.1	HCG4B, HLA-U	rs2975009-T	0.4651	7E-24		0.0380916	[0.031-0.046] unit increase	Affymetrix [~ 2500000] (imputed)	N
594	chr6_qbl_hap6	1194235	1194236	rs2471863	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p22.1	HLA-A	rs2471863-C	0.526	8E-7		0.057	[0.033-0.081] unit increase	Affymetrix, Illumina [7374092] (imputed)	N
594	chr6_qbl_hap6	1194285	1194286	rs2524005	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Varicose veins	22,037 European ancestry cases, 437,665 European ancestry controls, 474 East Asian ancestry cases, 178,252 East Asian ancestry controls	NA	6p22.1		rs2524005-A	NR	1E-12		0.0995	[0.072-0.127] unit decrease	Affymetrix, Illumina [25842955] (imputed)	N
594	chr6_qbl_hap6	1194285	1194286	rs2524005	22688191	Bergen SE	2012-06-12	Mol Psychiatry	Genome-wide association study in a Swedish population yields support for greater CNV and MHC involvement in schizophrenia compared with bipolar disorder.	Bipolar disorder and schizophrenia	2,111 European ancestry schizophrenia cases, 836 European ancestry bipolar disorder cases, 2,535 European ancestry controls	NA	6p22.1	other genes, MHC	rs2524005-?	NR	5E-7		1.32	[NR]	Affymetrix [745006]	N
594	chr6_qbl_hap6	1195301	1195302	rs72498354	32339537	Roberts V	2020-04-24	J Invest Dermatol	Genome wide association study identifies genetic associations with perceived age.	Youthful appearance (self-reported)	423,992 European ancestry individuals	NA	6p22.1	HLA-A	rs72498354-C	0.960927	4E-9		0.933287	NR	Affymetrix [~ 9600000] (imputed)	N
594	chr6_qbl_hap6	1196243	1196244	rs410930	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	6p22.1		rs410930-G	0.437235	1E-8		0.024544	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
594	chr6_qbl_hap6	1196484	1196485	rs1611337	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6p22.1		rs1611337-G	0.437603	2E-14		0.0312596	[0.023-0.039] unit decrease	NR [11722792] (imputed)	N
594	chr6_qbl_hap6	1196484	1196485	rs1611337	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	6p22.1		rs1611337-G	0.437688	8E-10		0.0255967	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
594	chr6_qbl_hap6	1196484	1196485	rs1611337	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p22.1		rs1611337-G	0.437603	8E-16		0.0334002	[0.025-0.042] unit decrease	NR [11722792] (imputed)	N
594	chr6_qbl_hap6	1196484	1196485	rs1611337	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6p22.1		rs1611337-G	0.437603	9E-12		0.0276947	[0.02-0.036] unit decrease	NR [11722792] (imputed)	N
594	chr6_qbl_hap6	1196484	1196485	rs1611337	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6p22.1		rs1611337-G	0.437603	1E-13		0.0306584	[0.023-0.039] unit increase	NR [11722792] (imputed)	N
594	chr6_qbl_hap6	1196484	1196485	rs1611337	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	6p22.1		rs1611337-G	0.437688	4E-9		0.0245909	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
594	chr6_qbl_hap6	1196484	1196485	rs1611337	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	6p22.1		rs1611337-G	0.437603	2E-9		0.0245327	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
594	chr6_qbl_hap6	1196484	1196485	rs1611337	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p22.1		rs1611337-G	0.437603	5E-18		0.036723	[0.028-0.045] unit increase	NR [11722792] (imputed)	N
594	chr6_qbl_hap6	1196484	1196485	rs1611337	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6p22.1		rs1611337-G	0.437603	5E-10		0.0250212	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
594	chr6_qbl_hap6	1196484	1196485	rs1611337	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	6p22.1		rs1611337-G	0.437688	5E-8		0.0224294	[0.014-0.03] unit increase	NR [11722792] (imputed)	N
594	chr6_qbl_hap6	1196484	1196485	rs1611337	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p22.1		rs1611337-G	0.437603	4E-17		0.0351407	[0.027-0.043] unit increase	NR [11722792] (imputed)	N
594	chr6_qbl_hap6	1196484	1196485	rs1611337	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6p22.1		rs1611337-G	0.437603	7E-11		0.02633	[0.018-0.034] unit increase	NR [11722792] (imputed)	N
594	chr6_qbl_hap6	1196749	1196750	rs9259970	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6p22.1		rs9259970-G	0.717498	4E-15		0.0371322	[0.028-0.046] unit decrease	NR [11722792] (imputed)	N
594	chr6_qbl_hap6	1196749	1196750	rs9259970	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	6p22.1		rs9259970-G	0.717498	5E-8		0.0259759	[0.017-0.035] unit decrease	NR [11722792] (imputed)	N
594	chr6_qbl_hap6	1196749	1196750	rs9259970	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	6p22.1		rs9259970-G	0.717498	6E-10		0.0286546	[0.02-0.038] unit decrease	NR [11722792] (imputed)	N
594	chr6_qbl_hap6	1198201	1198202	rs3098023	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium HDL	115,082 European ancestry individuals	NA	6p22.1		rs3098023-A	0.863945	3E-9		0.0367615	[0.025-0.049] unit increase	NR [11722792] (imputed)	N
594	chr6_qbl_hap6	1198201	1198202	rs3098023	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large HDL	115,082 European ancestry individuals	NA	6p22.1		rs3098023-A	0.863945	6E-9		0.0349811	[0.023-0.047] unit increase	NR [11722792] (imputed)	N
594	chr6_qbl_hap6	1198201	1198202	rs3098023	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in HDL	115,082 European ancestry individuals	NA	6p22.1		rs3098023-A	0.863945	2E-8		0.0348764	[0.023-0.047] unit increase	NR [11722792] (imputed)	N
594	chr6_qbl_hap6	1198201	1198202	rs3098023	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium HDL	115,082 European ancestry individuals	NA	6p22.1		rs3098023-A	0.863945	3E-13		0.0429887	[0.031-0.055] unit increase	NR [11722792] (imputed)	N
594	chr6_qbl_hap6	1198201	1198202	rs3098023	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in HDL	115,082 European ancestry individuals	NA	6p22.1		rs3098023-A	0.863945	9E-11		0.0369227	[0.026-0.048] unit increase	NR [11722792] (imputed)	N
594	chr6_qbl_hap6	1198217	1198218	rs28749114	33002439	Jin G	2020-10-01	Lancet Oncol	Genetic risk, incident gastric cancer, and healthy lifestyle: a meta-analysis of genome-wide association studies and prospective cohort study.	Gastric cancer	10,254 Han Chinese ancestry cases, 10,914 Han Chinese ancestry controls	NA	6p22.1	NR	rs28749114-A	0.6	5E-9		1.14	NR	Affymetrix, Illumina [6957974] (imputed)	N
594	chr6_qbl_hap6	1198217	1198218	rs28749114	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p22.1	HLA-A	rs28749114-G	0.359	4E-17	(Tapasin-related protein, TAPBPL.6364.7.3)	0.22	[0.16-0.28] unit decrease	Affymetrix [10572788] (imputed)	N
594	chr6_qbl_hap6	1198476	1198477	rs112580141	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HVEM on naive CD8+ T cell	1,247 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p22.1		rs112580141-C	0.37079	2E-8		0.2622	[0.17-0.35] unit increase	Illumina [16410374] (imputed)	N
594	chr6_qbl_hap6	1198711	1198712	rs9260013	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8 on Central Memory CD8+ T cell	2,910 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p22.1		rs9260013-T	0.19942	5E-11		0.2579	[0.18-0.33] unit increase	Illumina [17945467] (imputed)	N
594	chr6_qbl_hap6	1199079	1199080	rs453325	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	6p22.1	HLA-A	rs453325-A	0.7549	2E-8		0.002	[0.0014-0.0026] unit decrease	Affymetrix [15275733] (imputed)	N
594	chr6_qbl_hap6	1199455	1199456	rs2860580	27436580	Cui Q	2016-07-19	Hum Mol Genet	An extended genome-wide association study identifies novel susceptibility loci for nasopharyngeal carcinoma.	Nasopharyngeal carcinoma	1,583 Southern Chinese ancestry cases, 2,979 Southern Chinese ancestry controls	5,463 Southern Chinese ancestry cases, 5,591 Southern Chinese ancestry controls	6p22.1	NR	rs2860580-?	0.62	3E-31		1.89	[1.69-2.13]	Illumina [463250]	N
594	chr6_qbl_hap6	1199455	1199456	rs2860580	20512145	Bei JX	2010-05-30	Nat Genet	A genome-wide association study of nasopharyngeal carcinoma identifies three new susceptibility loci.	Nasopharyngeal carcinoma	1,583 Chinese ancestry cases, 1,894 Chinese ancestry controls	3,507 Chinese ancestry cases, 3,063 Chinese ancestry controls, 284  Chinese ancestry trios	6p22.1	HLA-A	rs2860580-?	0.62	5E-67		1.72	[1.61-1.82]	Illumina [464328]	N
594	chr6_qbl_hap6	1199540	1199541	rs3916500	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p22.1	HLA-A	rs3916500-A	0.94	7E-6		0.0619	[0.035-0.089] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
594	chr6_qbl_hap6	1200601	1200602	rs28749130	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	6p22.1	HLA-A	rs28749130-A	0.290175	2E-20		0.05423409	[0.043-0.066] unit increase	Affymetrix [93095623] (imputed)	N
594	chr6_qbl_hap6	1200661	1200662	rs28749131	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6p22.1	NR	rs28749131-G	0.6706	2E-10		1.041016	[1.03-1.05]	Affymetrix [15688218] (imputed)	N
594	chr6_qbl_hap6	1201580	1201581	rs13203830	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p22.1	NR	rs13203830-?	NR	8E-10				Affymetrix [~ 8270000] (imputed)	N
594	chr6_qbl_hap6	1201809	1201810	rs9260078	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein B2M	5,353 Icelandic ancestry individuals	NA	6p22.1		rs9260078-A	0.3408	3E-12		0.126365	[0.091-0.162] unit increase	Illumina [7506463] (imputed)	N
594	chr6_qbl_hap6	1201993	1201994	rs1632887	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		6p22.1	HLA-A	rs1632887-T	0.725853	2E-12		0.0110934	[0.008-0.0142] unit decrease	Affymetrix [12370749]	N
594	chr6_qbl_hap6	1202056	1202057	rs138847126	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental extreme longevity (95 years and older)	1,339 middle-aged British cases, 40,934 middle-aged British controls	NA	6p22.1	NR	rs138847126-?	NR	7E-6		0.01176	[0.0066-0.0169] unit decrease	Affymetrix [9658292] (imputed)	N
594	chr6_qbl_hap6	1202600	1202601	rs534723171	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p22.1	NR	rs534723171-T	0.061	2E-30	(conditional)	2.735	[2.56-2.91]	Illumina [11270530] (imputed)	N
594	chr6_qbl_hap6	1203135	1203136	rs1143146	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	6p22.1	HLA-A	rs1143146-G	0.462795	8E-17		0.019093748	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
594	chr6_qbl_hap6	1203155	1203156	rs41546314	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p22.1		rs41546314-T	0.309983	5E-23		1.0479736	[1.04-1.05]	Affymetrix, Illumina [9851866] (imputed)	N
594	chr6_qbl_hap6	1203255	1203256	rs9260127	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Triglycerides	429,011 European ancestry individuals	NA	6p22.1		rs9260127-G	0.45	7E-14		0.015	mmol/L decrease	NR [NR] (imputed)	N
594	chr6_qbl_hap6	1203255	1203256	rs9260127	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	6p22.1		rs9260127-G	0.45	3E-20				NR [NR] (imputed)	N
594	chr6_qbl_hap6	1203255	1203256	rs9260127	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	High density lipoprotein cholesterol levels	392,965 European ancestry individuals	NA	6p22.1		rs9260127-G	0.45	4E-13		0.013	mmol/L decrease	NR [NR] (imputed)	N
594	chr6_qbl_hap6	1203255	1203256	rs9260127	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	6p22.1		rs9260127-G	0.45	8E-12		0.01	% increase	NR [NR] (imputed)	N
594	chr6_qbl_hap6	1203255	1203256	rs9260127	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Aspartate aminotransferase levels	424,778 European ancestry individuals	NA	6p22.1		rs9260127-G	0.45	4E-17		0.016	U/L decrease	NR [NR] (imputed)	N
594	chr6_qbl_hap6	1203255	1203256	rs9260127	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	6p22.1	HCG4P5	rs9260127-C	0.554534	6E-12		0.01662031	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
594	chr6_qbl_hap6	1203508	1203509	rs79361534	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p22.1	HLA-A	rs79361534-A		1E-36		0.036	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
594	chr6_qbl_hap6	1203536	1203537	rs1071742	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p22.1		rs1071742-?	NR	2E-17		0.0224179	[0.018-0.027] unit decrease	Affymetrix [20259828] (imputed)	N
594	chr6_qbl_hap6	1203544	1203545	rs1136689	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	6p22.1	HLA-A	rs1136689-C	0.145613	8E-12		0.022252768	[0.016-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
594	chr6_qbl_hap6	1203578	1203579	rs1136692	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	HLA-A, HCG4P5	rs1136692-A	NR	1E-9		0.0207185	[0.014-0.027] unit decrease	Affymetrix [323858] (imputed)	N
594	chr6_qbl_hap6	1203578	1203579	rs1136692	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	HLA-A, HCG4P5	rs1136692-A	NR	1E-9		0.0208558	[0.014-0.028] unit decrease	Affymetrix [127266] (imputed)	N
594	chr6_qbl_hap6	1203807	1203808	rs9260151	29404672	Roshandel D	2018-02-05	Diabetologia	Meta-genome-wide association studies identify a locus on chromosome 1 and multiple variants in the MHC region for serum C-peptide in type 1 diabetes.	C-peptide levels in type I diabetes	3,479 European ancestry individuals	NA	6p22.1	MHC, HLA-A	rs9260151-T	0.09	8E-8				Illumina [7988630] (imputed)	N
594	chr6_qbl_hap6	1203891	1203892	rs3173420	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	6p22.1	HLA-A	rs3173420-A	0.525347	1E-30		0.02624179	[0.022-0.031] unit increase	Affymetrix [93095623] (imputed)	N
594	chr6_qbl_hap6	1204005	1204006	rs9256983	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p22.1	NR	rs9256983-?	NR	5E-6		0.0485	[0.028-0.069] unit increase	Illumina [at least 560000] (imputed)	N
594	chr6_qbl_hap6	1204016	1204017	rs9260155	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p22.1	HLA-A	rs9260155-C	0.420482	2E-24		0.027366111	[0.022-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
594	chr6_qbl_hap6	1204133	1204134	rs3132687	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	6p22.1	NR	rs3132687-?	NR	2E-11	(MIC-A)	0.664201	[0.47-0.86] unit increase	Illumina [11901634] (imputed)	N
594	chr6_qbl_hap6	1204466	1204467	rs9260164	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	6p22.1	HLA-A	rs9260164-C	0.737668	6E-21		0.0151662	[0.012-0.018] unit decrease	Affymetrix [12370749]	N
594	chr6_qbl_hap6	1205252	1205253	rs9260194	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycoprotein acetyls levels	115,082 European ancestry individuals	NA	6p22.1		rs9260194-C	0.511331	5E-17		0.0344827	[0.026-0.043] unit decrease	NR [11722792] (imputed)	N
594	chr6_qbl_hap6	1205289	1205290	rs2975059	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p22.1		rs2975059-T	0.673	3E-55				Affymetrix [10369434] (imputed)	N
594	chr6_qbl_hap6	1205289	1205290	rs2975059	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6p22.1	HLA-A	rs2975059-C	0.327132	2E-74		0.04847726	[0.043-0.054] unit increase	Affymetrix [93095623] (imputed)	N
594	chr6_qbl_hap6	1205389	1205390	rs17882753	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	6p22.1	HLA-A	rs17882753-T	0.1254	6E-21		0.05153304	[0.041-0.062] unit increase	Affymetrix [~ 2500000] (imputed)	N
594	chr6_qbl_hap6	1206090	1206091	rs1061235	21428769	McCormack M	2011-03-24	N Engl J Med	HLA-A*3101 and carbamazepine-induced hypersensitivity reactions in Europeans.	Adverse response to carbamazepine	65 European ancestry cases, 3,987 European ancestry controls	80 European ancestry cases, 257 European ancestry controls	6p22.1	HLA-A*3101	rs1061235-?	NR	1E-7		9.12	[4.03-20.65]	Illumina [~ 1200000] (imputed)	N
594	chr6_qbl_hap6	1206678	1206679	rs34941730	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p22.1	HLA-A	rs34941730-G	0.119	2E-9		0.102	[0.069-0.135] unit decrease	Affymetrix, Illumina [7374092] (imputed)	N
594	chr6_qbl_hap6	1207325	1207326	rs376253	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6p22.1	HLA-A	rs376253-A	NR	3E-10		0.0221166	[0.015-0.029] unit decrease	Affymetrix [321114] (imputed)	N
594	chr6_qbl_hap6	1207565	1207566	rs17179564	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	82,810 East Asian ancestry individuals	NA	6p22.1		rs17179564-A	0.36573	6E-10		0.0301926	[0.021-0.04] unit increase	Illumina [13467171] (imputed)	N
594	chr6_qbl_hap6	1207620	1207621	rs2735099	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p22.1	NR	rs2735099-T	0.417	3E-26	(IFNAR2_of_CD20p)			Illumina [5084123] (imputed)	N
594	chr6_qbl_hap6	1207853	1207854	rs2248162	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	HLA-A	rs2248162-T	NR	3E-8		0.0179351	[0.012-0.024] unit decrease	Affymetrix [323858] (imputed)	N
594	chr6_qbl_hap6	1208679	1208680	rs2517720	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6p22.1	HLA-A	rs2517720-C	0.555569	1E-14		0.022822132	[0.017-0.029] unit increase	Affymetrix [93095623] (imputed)	N
594	chr6_qbl_hap6	1209606	1209607	rs1655901	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	6p22.1	HLA-A	rs1655901-C	0.557583	3E-22		0.02534704	[0.02-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
594	chr6_qbl_hap6	1209687	1209688	rs9260313	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p22.1	HLA-A	rs9260313-C		5E-24		0.02	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
594	chr6_qbl_hap6	1209687	1209688	rs9260313	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	6p22.1	HLA-A	rs9260313-C	0.2875	1E-15		0.03200038	[0.024-0.04] unit increase	Affymetrix [~ 2500000] (imputed)	N
594	chr6_qbl_hap6	1209687	1209688	rs9260313	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	6p22.1	HLA-A	rs9260313-C	0.2876	1E-15		0.03178619	[0.024-0.04] unit increase	Affymetrix [~ 2500000] (imputed)	N
594	chr6_qbl_hap6	1210909	1210910	rs2517713	19664746	Tse KP	2009-08-05	Am J Hum Genet	Genome-wide association study reveals multiple nasopharyngeal carcinoma-associated loci within the HLA region at chromosome 6p21.3.	Nasopharyngeal carcinoma	277 Han Chinese ancestry cases, 285 Han Chinese ancestry controls	635 Han Chinese ancestry cases, 1,640 Han Chinese ancestry controls	6p22.1	HLA-A	rs2517713-A	0.62	4E-20		1.88	[1.65-2.15]	Illumina [480365]	N
594	chr6_qbl_hap6	1211919	1211920	rs9260426	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p22.1		rs9260426-?	NR	6E-27		0.0229231	[0.019-0.027] unit increase	Affymetrix [20259828] (imputed)	N
594	chr6_qbl_hap6	1211919	1211920	rs9260426	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	6p22.1	HLA-A	rs9260426-A	0.498682	2E-8	(women)	0.0236393	[0.015-0.033] unit increase	NR [17166351] (imputed)	N
594	chr6_qbl_hap6	1211919	1211920	rs9260426	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	6p22.1	HLA-A	rs9260426-A	0.498488	3E-11		0.020854	[0.014-0.027] unit increase	NR [17166351] (imputed)	N
594	chr6_qbl_hap6	1212635	1212636	rs7747253	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	6p22.1	HLA-A	rs7747253-C	0.499099	1E-33		0.022146	[0.019-0.026] unit increase	NR [13737936] (imputed)	N
594	chr6_qbl_hap6	1213188	1213189	rs9260489	23417110	Tin A	2013-02-16	Hum Genet	Genome-wide association study identified the human leukocyte antigen region as a novel locus for plasma beta-2 microglobulin.	Beta-2 microglubulin plasma levels	6,728 European ancestry individuals		6p22.1	HLA-A	rs9260489-G	0.58	2E-22		0.04	[0.032-0.048] unit decrease	Affymetrix [2500000] (imputed)	N
594	chr6_qbl_hap6	1213188	1213189	rs9260489	22190364	Patsopoulos NA	2011-12-01	Ann Neurol	Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.	Multiple sclerosis	5,545 European ancestry cases, 12,153 European ancestry controls	NA	6p22.1	HLA-B	rs9260489-T	0.45	1E-11		1.21	[NR]	Affymetrix, Illumina [2529394]	N
594	chr6_qbl_hap6	1213279	1213280	rs9260492	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p22.1		rs9260492-T	0.5	3E-19				Affymetrix [10369434] (imputed)	N
594	chr6_qbl_hap6	1213565	1213566	rs9260500	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p22.1		rs9260500-T	0.5	2E-56				Affymetrix [10369434] (imputed)	N
594	chr6_qbl_hap6	1213882	1213883	rs28749167	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	286 European ancestry cases, 2,652 European ancestry controls, 76 Han Chinese ancestry cases, 889 Han Chinese ancestry controls, 46 South Asian ancestry cases, 501 South Asian ancestry controls, 683 Turkish ancestry cases, 1,721 Turkish ancestry controls	NA	6p22.1	HLA-G	rs28749167-?	NR	2E-9	(conditional on rs2844678, rs12524487, rs17193507 and rs12526858)	1.43	NR	Illumina [up to 4495750] (imputed)	N
594	chr6_qbl_hap6	1214021	1214022	rs9260526	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (underestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	6p22.1	NR	rs9260526-?	NR	5E-9		5.864	NR z score increase	Illumina [at least 830937] (imputed)	N
594	chr6_qbl_hap6	1214308	1214309	rs137886986	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6p22.1	HLA-W	rs137886986-A	0.09576	8E-24		0.039658234	[0.032-0.047] unit increase	Affymetrix [93095623] (imputed)	N
594	chr6_qbl_hap6	1215492	1215493	rs28780071	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	Intrinsic epigenetic age acceleration	34,461 European ancestry individuals	NA	6p22.1	NR	rs28780071-T	0.3313	4E-9		0.2035	[0.14-0.27] unit increase	Affymetrix, Illumina [7567980] (imputed)	N
594	chr6_qbl_hap6	1215565	1215566	rs16896742	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NPTX1	5,365 Icelandic ancestry individuals	NA	6p22.1		rs16896742-G	0.4238	6E-28		0.206363	[0.17-0.24] unit decrease	Illumina [7506463] (imputed)	N
594	chr6_qbl_hap6	1215565	1215566	rs16896742	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	6p22.1	HLA-A	rs16896742-G	0.38	3E-10		0.04	[0.028-0.052] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
594	chr6_qbl_hap6	1215579	1215580	rs9260603	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p22.1	HLA-W	rs9260603-T	NR	2E-8		0.0159518	[0.01-0.021] unit increase	Affymetrix [319769] (imputed)	N
594	chr6_qbl_hap6	1215579	1215580	rs9260603	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p22.1	HLA-W	rs9260603-T	NR	4E-8		0.0156092	[0.01-0.021] unit increase	Affymetrix [319769] (imputed)	N
594	chr6_qbl_hap6	1215905	1215906	rs9260619	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p22.1	NR	rs9260619-?	NR	3E-11		0.2395	[0.17-0.31] unit increase	Illumina [at least 560000] (imputed)	N
594	chr6_qbl_hap6	1215910	1215911	rs9260620	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	6p22.1	HLA-W	rs9260620-G	0.3359	2E-74		0.06971236	[0.062-0.077] unit decrease	Affymetrix [~ 2500000] (imputed)	N
594	chr6_qbl_hap6	1215910	1215911	rs9260620	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	6p22.1	HLA-W	rs9260620-G	0.3358	2E-44		0.05337227	[0.046-0.061] unit decrease	Affymetrix [~ 2500000] (imputed)	N
594	chr6_qbl_hap6	1215910	1215911	rs9260620	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	6p22.1	HLA-W	rs9260620-G	0.3358	4E-40		0.05070884	[0.043-0.058] unit decrease	Affymetrix [~ 2500000] (imputed)	N
594	chr6_qbl_hap6	1215910	1215911	rs9260620	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	6p22.1	HLA-W	rs9260620-G	0.3358	2E-39		0.05008696	[0.043-0.058] unit decrease	Affymetrix [~ 2500000] (imputed)	N
594	chr6_qbl_hap6	1215910	1215911	rs9260620	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	6p22.1	HLA-W	rs9260620-G	0.3358	6E-51		0.05759035	[0.05-0.065] unit decrease	Affymetrix [~ 2500000] (imputed)	N
594	chr6_qbl_hap6	1215910	1215911	rs9260620	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	6p22.1	HLA-W	rs9260620-G	0.3357	4E-53		0.05836372	[0.051-0.066] unit decrease	Affymetrix [~ 2500000] (imputed)	N
594	chr6_qbl_hap6	1215910	1215911	rs9260620	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	6p22.1	HLA-W	rs9260620-G	0.3358	7E-45		0.05377813	[0.046-0.061] unit decrease	Affymetrix [~ 2500000] (imputed)	N
594	chr6_qbl_hap6	1216067	1216068	rs7768235	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p22.1	HLA-W	rs7768235-C	0.514186	1E-16		0.022017317	[0.017-0.027] unit increase	Affymetrix [93095623] (imputed)	N
594	chr6_qbl_hap6	1216067	1216068	rs7768235	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	6p22.1	HLA-W	rs7768235-C	0.514229	5E-14		0.02060967	[0.015-0.026] unit increase	Affymetrix [93095623] (imputed)	N
594	chr6_qbl_hap6	1216067	1216068	rs7768235	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p22.1		rs7768235-?	NR	7E-25		0.0219262	[0.018-0.026] unit increase	Affymetrix [20259828] (imputed)	N
594	chr6_qbl_hap6	1216170	1216171	rs2904758	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	6p22.1	HLA-W	rs2904758-A	0.7187	6E-17		0.03315845	[0.025-0.041] unit decrease	Affymetrix [~ 2500000] (imputed)	N
594	chr6_qbl_hap6	1216242	1216243	rs9260639	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	6p22.1	HLA-W	rs9260639-T	0.1389	2E-14		0.03938988	[0.029-0.05] unit increase	Affymetrix [~ 2500000] (imputed)	N
594	chr6_qbl_hap6	1216322	1216323	rs2571389	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p22.1		rs2571389-T	0.5	1E-30				Affymetrix [10369434] (imputed)	N
594	chr6_qbl_hap6	1216373	1216374	rs2571390	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8 on Effector Memory CD8+ T cell	2,912 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p22.1		rs2571390-C	0.82253	6E-22		0.3643	[0.29-0.44] unit increase	Illumina [17945888] (imputed)	N
594	chr6_qbl_hap6	1216661	1216662	rs2571391	22075330	Granada M	2011-11-08	J Allergy Clin Immunol	A genome-wide association study of plasma total IgE concentrations in the Framingham Heart Study.	IgE levels	6,819 European ancestry individuals	7,809 European ancestry indivduals	6p22.1	HLA-A	rs2571391-C	NR	1E-15		0.06	[NR] unit increase	Affymetrix [2540223] (imputed)	N
594	chr6_qbl_hap6	1217043	1217044	rs2571392	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	6p22.1	HLA-W	rs2571392-A	0.314446	4E-11		0.023026897	[0.016-0.03] unit increase	Affymetrix [93095623] (imputed)	N
594	chr6_qbl_hap6	1217117	1217118	rs73725598	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	6p22.1	HLA-W	rs73725598-C	0.0934	2E-9		0.03755279	[0.025-0.05] unit decrease	Affymetrix [~ 2500000] (imputed)	N
594	chr6_qbl_hap6	1217190	1217191	rs2571394	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TAPBPL	5,368 Icelandic ancestry individuals	NA	6p22.1		rs2571394-G	0.3722	1E-15		0.160938	[0.12-0.2] unit decrease	Illumina [7506463] (imputed)	N
594	chr6_qbl_hap6	1217241	1217242	rs17179851	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Gynecologic disease	7,975 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs17179851-?		7E-8		1.11	[1.07-1.15]	Illumina [7645193] (imputed)	N
594	chr6_qbl_hap6	1217241	1217242	rs17179851	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Gynecologic disease	7,315 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs17179851-?		7E-7				Illumina [7645193] (imputed)	N
594	chr6_qbl_hap6	1217343	1217344	rs1808199	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	6p22.1	HLA-W	rs1808199-T	0.092214	4E-22		0.03959165	[0.032-0.048] unit decrease	Affymetrix [93095623] (imputed)	N
594	chr6_qbl_hap6	1217904	1217905	rs114193679	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mumps	31,227 European ancestry cases, 54,153 European ancestry controls	NA	6p22.1	HLA-A	rs114193679-G	0.99	2E-17		1.72	[1.62-1.84]	Illumina [at least 560000] (imputed)	N
594	chr6_qbl_hap6	1218069	1218070	rs17186335	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p22.1	NR	rs17186335-?	NR	3E-8		0.0898	[0.058-0.122] unit decrease	Illumina [at least 560000] (imputed)	N
594	chr6_qbl_hap6	1218678	1218679	rs62392216	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	57 Italian ancestry cases, 931 Italian ancestry controls	NA	6p22.1	HLA-B	rs62392216-?	NR	1E-11				Illumina [4425173] (imputed)	N
594	chr6_qbl_hap6	1218678	1218679	rs62392216	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	229 European ancestry cases, 1,088 European ancestry controls	NA	6p22.1	HLA-G	rs62392216-?	NR	3E-11	(conditional on rs12524487)			Illumina [4388215] (imputed)	N
594	chr6_qbl_hap6	1219178	1219179	rs9260679	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	6p22.1	NR	rs9260679-?	NR	9E-90		20.092	NR z score increase	Illumina [at least 830937] (imputed)	N
594	chr6_qbl_hap6	1219896	1219897	rs2735085	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	HLA-W	rs2735085-A	NR	5E-8		0.0198962	[0.013-0.027] unit decrease	Affymetrix [321016] (imputed)	N
594	chr6_qbl_hap6	1220083	1220084	rs114577328	28043905	Nicoletti P	2016-12-30	Gastroenterology	Association of Liver Injury From Specific Drugs, or Groups of Drugs, With Polymorphisms in HLA and Other Genes in a Genome-Wide Association Study.	Drug-induced liver injury	862 European ancestry cases and 10,588 European ancestry controls	NA	6p22.1	MHC	rs114577328-?	0.01	2E-8		2.7	1.9-3.8	Illumina [505740] (imputed)	N
594	chr6_qbl_hap6	1220523	1220524	rs2571400	34642315	Ferreiro-Iglesias A	2021-10-12	Nat Commun	Germline determinants of humoral immune response to HPV-16 protect against oropharyngeal cancer.	Human papilloma virus 16 positive oropharyngeal cancer	1,078 European ancestry cases, 5,256 European ancestry controls	NA	6p22.1		rs2571400-G	NR	3E-6		1.2905		Illumina [7574753] (imputed)	N
594	chr6_qbl_hap6	1220523	1220524	rs2571400	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	HLA-W	rs2571400-C	NR	5E-8		5.453	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
594	chr6_qbl_hap6	1221875	1221876	rs2517690	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p22.1	NR	rs2517690-?	NR	7E-9				Affymetrix [~ 8270000] (imputed)	N
594	chr6_qbl_hap6	1223741	1223742	rs56262516	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8 on CD28- CD8+ T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p22.1		rs56262516-A	0.27456	1E-11		0.23	[0.16-0.3] unit increase	Illumina [17954496] (imputed)	N
594	chr6_qbl_hap6	1223741	1223742	rs56262516	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8 on CD28+ CD45RA- CD8+ T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p22.1		rs56262516-A	0.27456	7E-13		0.2531	[0.18-0.32] unit increase	Illumina [17954496] (imputed)	N
594	chr6_qbl_hap6	1224147	1224148	rs192543598	31066027	Nicoletti P	2019-05-07	Clin Pharmacol Ther	Shared genetic risk factors across carbamazepine-induced hypersensitivity reactions.	Carbamazepine-induced serious cutaneous adverse reaction	43 European ancestry cases, 10,701 European ancestry controls	NA	6p22.1	NR	rs192543598-G	0.01	2E-12		18.11	[8.03-40.88]	Illumina [5271349] (imputed)	N
594	chr6_qbl_hap6	1224707	1224708	rs2517683	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	6p22.1	HLA-W	rs2517683-C	NR	5E-10		0.0183528	[0.013-0.024] unit decrease	Affymetrix [321788] (imputed)	N
594	chr6_qbl_hap6	1225094	1225095	rs2523933	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	HLA-W	rs2523933-T	NR	2E-9		6.01	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
594	chr6_qbl_hap6	1226027	1226028	rs2517678	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	6p22.1	intergenic	rs2517678-T	0.3811	2E-9		0.02249725	[0.015-0.03] unit increase	Affymetrix [~ 2500000] (imputed)	N
594	chr6_qbl_hap6	1226063	1226064	rs6457109	33574277	Kawai Y	2021-02-11	NPJ Genom Med	Mapping of susceptible variants for cold medicine-related Stevens-Johnson syndrome by whole-genome resequencing.	Cold medicine-related Stevens-Johnson syndrome/toxic epidermal necrolysis (SJS/TEN) with severe ocular complications	133 Japanese ancestry cases, 418 Japanese ancestry controls	NA	6p22.1		rs6457109-C	0.2519	3E-16		4.516		Illumina [7608150]	N
594	chr6_qbl_hap6	1226820	1226821	rs6914699	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	MICD	rs6914699-T	NR	3E-8		5.569	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
594	chr6_qbl_hap6	1226962	1226963	rs6935053	23511034	Yang SK	2013-04-01	Inflamm Bowel Dis	Genome-wide association study of ulcerative colitis in Koreans suggests extensive overlapping of genetic susceptibility with Caucasians.	Ulcerative colitis	388 Korean ancestry cases, 739 Korean ancestry controls	417 Korean ancestry cases, 732 Korean ancestry controls	6p22.1	HCG9	rs6935053-?	NR	2E-6	(Conditioned on rs9271366)			Illumina [581060]	N
594	chr6_qbl_hap6	1228049	1228050	rs3893464	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p22.1		rs3893464-G	0.514	7E-43				Affymetrix [10369434] (imputed)	N
594	chr6_qbl_hap6	1228049	1228050	rs3893464	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	6p22.1	MICD	rs3893464-A	0.4884	7E-54		0.05503962	[0.048-0.062] unit decrease	Affymetrix [~ 2500000] (imputed)	N
594	chr6_qbl_hap6	1228049	1228050	rs3893464	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	6p22.1	MICD	rs3893464-A	0.4883	8E-55		0.05548136	[0.049-0.062] unit decrease	Affymetrix [~ 2500000] (imputed)	N
594	chr6_qbl_hap6	1228049	1228050	rs3893464	21900946	Nakabayashi K	2011-09-08	J Hum Genet	Identification of independent risk loci for Graves' disease within the MHC in the Japanese population.	Graves' disease	1,119 Japanese ancestry cases, 2,718 Japanese ancestry controls	432 Japanese ancestry cases, 1,157 Japanese ancestry controls	6p22.1	MHC	rs3893464-G	0.36	2E-20		1.53	[1.39-1.67]	Perlegen [268068]	N
594	chr6_qbl_hap6	1228204	1228205	rs3893463	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	MICD	rs3893463-T	NR	2E-8		5.65	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
594	chr6_qbl_hap6	1228520	1228521	rs56402621	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	6p22.1	HLA-A, ZNRD1-AS1	rs56402621-T	0.0181	2E-7		0.0330166	[0.021-0.045] unit increase	Affymetrix [11880941] (imputed)	N
594	chr6_qbl_hap6	1229435	1229436	rs9260765	33143745	Andlauer TFM	2020-11-04	BMC Med	Treatment- and population-specific genetic risk factors for anti-drug antibodies against interferon-beta: a GWAS.	Binding antibody response to interferon beta therapy in multiple sclerosis (antibody levels; all treatment preparations)	up to 2,000 German and Swedish ancestry individuals	up to 757 German and Swedish ancestry individuals	6p22.1		rs9260765-C	0.45	5E-11		0.17372645	[0.12-0.23] unit increase	Illumina [8550834] (imputed)	N
594	chr6_qbl_hap6	1230137	1230141	rs60131261	27723757	Jin Y	2016-11-01	Nat Genet	Genome-wide association studies of autoimmune vitiligo identify 23 new risk loci and highlight key pathways and regulatory variants.	Vitiligo	2,853 European ancestry cases and 37,405 European ancestry controls	1,827 European ancestry cases and 2,181 European ancestry controls	6p22.1	HLA-A	rs60131261-?	NR	2E-66		1.535	NR	Illumina [8966411] (imputed)	N
594	chr6_qbl_hap6	1230356	1230357	rs1061539	30566020	Fukaya E	2018-12-01	Circulation	Clinical and Genetic Determinants of Varicose Veins.	Varicose veins	9,577 British ancestry cases, 327,959 British ancestry controls	NA	6p22.1	NR	rs1061539-C	0.83	2E-9		0.113	[0.076-0.15] unit decrease	Affymetrix [10972371] (imputed)	N
594	chr6_qbl_hap6	1230585	1230586	rs2523972	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p22.1	MICD	rs2523972-C	NR	1E-11		0.0191491	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
594	chr6_qbl_hap6	1230585	1230586	rs2523972	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p22.1	MICD	rs2523972-C	NR	1E-10		0.0182302	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
594	chr6_qbl_hap6	1230585	1230586	rs2523972	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	MICD	rs2523972-C	NR	1E-12		0.0200168	[0.014-0.026] unit decrease	Affymetrix [321016] (imputed)	N
594	chr6_qbl_hap6	1230725	1230726	rs1061535	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	6p22.1	NR	rs1061535-?	NR	1E-6		0.0535	[0.032-0.075] unit decrease	Illumina [at least 560000] (imputed)	N
594	chr6_qbl_hap6	1230778	1230779	rs2517671	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	6p22.1	HCG9	rs2517671-G	0.419267	3E-22		0.023432834	[0.019-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
594	chr6_qbl_hap6	1231949	1231950	rs2523968	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p22.1	NR	rs2523968-A	0.429	4E-12	(conditional)	1.132	[1.1-1.17]	Illumina [11270530] (imputed)	N
594	chr6_qbl_hap6	1232381	1232382	rs2523961	29784950	Sawai H	2018-05-21	Sci Rep	Genome-wide association study identified new susceptible genetic variants in HLA class I region for hepatitis B virus-related hepatocellular carcinoma.	Hepatocellular carcinoma in hepatitis B infection	473 Japanese ancestry chronic hepatitis and hepatocellular carcinoma cases, 516 Japanese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma	153 Japanese ancestry chronic hepatitis and hepatocellular carcinoma cases, 614 Japanese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma, 94 Chinese ancestry chronic hepatitis and hepatocellular carcinoma cases, 187 Chinese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma, 185 Thai ancestry chronic hepatitis and hepatocellular carcinoma cases, 198 Thai ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma	6p22.1	HLA	rs2523961-?	NR	6E-11		1.91	[1.56-2.37] Japanese	Affymetrix [447830]	N
594	chr6_qbl_hap6	1232381	1232382	rs2523961	29784950	Sawai H	2018-05-21	Sci Rep	Genome-wide association study identified new susceptible genetic variants in HLA class I region for hepatitis B virus-related hepatocellular carcinoma.	Hepatocellular carcinoma in hepatitis B infection	473 Japanese ancestry chronic hepatitis and hepatocellular carcinoma cases, 516 Japanese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma	153 Japanese ancestry chronic hepatitis and hepatocellular carcinoma cases, 614 Japanese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma, 94 Chinese ancestry chronic hepatitis and hepatocellular carcinoma cases, 187 Chinese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma, 185 Thai ancestry chronic hepatitis and hepatocellular carcinoma cases, 198 Thai ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma	6p22.1	HLA	rs2523961-?	NR	6E-10	(Japanese)	1.91	[1.56-2.37]	Affymetrix [447830]	N
594	chr6_qbl_hap6	1234226	1234227	rs9295825	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p22.1	NR	rs9295825-?	NR	3E-18		0.1197	[0.092-0.147] unit increase	Illumina [at least 560000] (imputed)	N
594	chr6_qbl_hap6	1234604	1234605	rs444252	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Strep throat	52,487 European ancestry cases, 22,017 European ancestry controls	NA	6p22.1	NR	rs444252-?	NR	1E-6		0.0267	[0.016-0.037] unit increase	Illumina [at least 560000] (imputed)	N
594	chr6_qbl_hap6	1234734	1234735	rs2523946	32912934	Li M	2020-09-10	J Am Soc Nephrol	Genome-Wide Meta-Analysis Identifies Three Novel Susceptibility Loci and Reveals Ethnic Heterogeneity of Genetic Susceptibility for IgA Nephropathy.	IgA nephropathy	2,628 Chinese ancestry cases, 11,563 Chinese ancestry controls	6,879 Han Chinese ancestry cases, 9,019 Han Chinese ancestry controls, 1,039 Italian ancestry cases, 1,289 Italian ancestry controls	6p22.1	HLA-A	rs2523946-C	0.5077594888869671	2E-8	(East Asian)	1.2170416	[1.13667796674979-1.3030869883916]	NR [3611808] (imputed)	N
594	chr6_qbl_hap6	1234734	1234735	rs2523946	26028593	Li M	2015-06-01	Nat Commun	Identification of new susceptibility loci for IgA nephropathy in Han Chinese.	IgA nephropathy	1,434 Han Chinese ancestry cases, 10,661 Han Chinese ancestry controls	6,879 Han Chinese ancestry cases, 9,019 Han Chinese ancestry controls	6p22.1	NR	rs2523946-C	0.511	5E-11		1.317	[1.217-1.426]	Illumina [3792949] (imputed)	N
594	chr6_qbl_hap6	1234734	1234735	rs2523946	22197929	Yu XQ	2011-12-25	Nat Genet	A genome-wide association study in Han Chinese identifies multiple susceptibility loci for IgA nephropathy.	IgA nephropathy	1,434 Han Chinese ancestry cases, 4,270 Han Chinese ancestry controls	2,703 Han Chinese ancestry cases, 3,464 Han Chinese ancestry controls	6p22.1	HLA-A	rs2523946-C	0.50	2E-11		1.21	[1.15-1.28]	Illumina [444882]	N
594	chr6_qbl_hap6	1234874	1234875	rs3823355	20410501	Jin Y	2010-04-21	N Engl J Med	Variant of TYR and autoimmunity susceptibility loci in generalized vitiligo.	Vitiligo	1,392 European ancestry cases, 2,629 European ancestry controls	647 European ancestry cases, 1,056 European ancestry controls, 183 European ancestry trios, 1,383 European ancestry individuals from 332 families	6p22.1	HLA-A, HCG9	rs3823355-T	0.29	9E-23		1.5	[1.39-1.63]	Illumina [520460]	N
594	chr6_qbl_hap6	1235177	1235178	rs35835721	33574277	Kawai Y	2021-02-11	NPJ Genom Med	Mapping of susceptible variants for cold medicine-related Stevens-Johnson syndrome by whole-genome resequencing.	Cold medicine-related Stevens-Johnson syndrome/toxic epidermal necrolysis (SJS/TEN) with severe ocular complications	133 Japanese ancestry cases, 418 Japanese ancestry controls	NA	6p22.1		rs35835721-G	0.4624	8E-15		3.091		Illumina [7608150]	N
594	chr6_qbl_hap6	1235465	1235466	rs1960063	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	HCG9	rs1960063-A	NR	4E-10		0.0213735	[0.015-0.028] unit decrease	Affymetrix [323858] (imputed)	N
594	chr6_qbl_hap6	1235465	1235466	rs1960063	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	HCG9	rs1960063-A	NR	4E-10		0.0213569	[0.015-0.028] unit decrease	Affymetrix [127266] (imputed)	N
594	chr6_qbl_hap6	1235858	1235859	rs6904029	24939585	Fransen E	2014-06-18	Eur J Hum Genet	Genome-wide association analysis demonstrates the highly polygenic character of age-related hearing impairment.	Age-related hearing impairment	1,489 European ancestry individuals	NA	6p22.1	HLA-A29.1, HCG9	rs6904029-?		3E-6	(PC3)	0.0464	[NR] unit decrease	Illumina [4167292] (imputed)	N
594	chr6_qbl_hap6	1236445	1236446	rs2394250	23749187	Cortes A	2013-07-01	Nat Genet	Identification of multiple risk variants for ankylosing spondylitis through high-density genotyping of immune-related loci.	Ankylosing spondylitis	9,069 European ancestry cases, 1,550 East Asian ancestry cases, 13,578 European ancestry controls, 1,567 East Asian ancestry controls	NA	6p22.1	HLA-A*0201	rs2394250-?	0.421	8E-51	(EA)	1.541		Illumina [128935]	N
594	chr6_qbl_hap6	1236477	1236478	rs2394251	33269293	Kannambath S	2020-10-16	Open Forum Infect Dis	Genome-Wide Association Study Identifies Novel Colony Stimulating Factor 1 Locus Conferring Susceptibility to Cryptococcosis in Human Immunodeficiency Virus-Infected South Africans.	Cryptococcosis in HIV infection	319 South African ancestry cases, 399 South African ancestry controls	NA	6p22.1	HLA-H	rs2394251-?	NR	9E-6		0.7439	[NR]	Illumina [2686126] (imputed)	N
594	chr6_qbl_hap6	1236506	1236507	rs3823363	34642315	Ferreiro-Iglesias A	2021-10-12	Nat Commun	Germline determinants of humoral immune response to HPV-16 protect against oropharyngeal cancer.	Oropharynx cancer and human papilloma virus 16 negative oropharyngeal cancer	2,359 European ancestry cases, 565 European ancestry controls	NA	6p22.1		rs3823363-A	NR	1E-7		0.8222		Illumina [up to 7574753] (imputed)	N
594	chr6_qbl_hap6	1237252	1237253	rs3823379	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	6p22.1	HLA-A	rs3823379-T	0.487762	1E-16		0.0171763	[0.013-0.021] unit decrease	Affymetrix [NR] (imputed)	N
594	chr6_qbl_hap6	1237337	1237338	rs2735075	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p22.1		rs2735075-T	0.592	2E-18				Affymetrix [10369434] (imputed)	N
594	chr6_qbl_hap6	1238743	1238744	rs3132685	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small HDL	115,082 European ancestry individuals	NA	6p22.1		rs3132685-G	0.865719	1E-10		0.0393348	[0.027-0.051] unit increase	NR [11722792] (imputed)	N
594	chr6_qbl_hap6	1238743	1238744	rs3132685	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	6p22.1		rs3132685-G	0.865719	6E-9		0.0355211	[0.024-0.047] unit decrease	NR [11722792] (imputed)	N
594	chr6_qbl_hap6	1238743	1238744	rs3132685	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small HDL	115,082 European ancestry individuals	NA	6p22.1		rs3132685-G	0.865719	5E-12		0.0418299	[0.03-0.054] unit increase	NR [11722792] (imputed)	N
594	chr6_qbl_hap6	1238743	1238744	rs3132685	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-3 fatty acid levels	115,006 European ancestry individuals	NA	6p22.1		rs3132685-G	0.865725	2E-11		0.0394662	[0.028-0.051] unit increase	NR [11722792] (imputed)	N
594	chr6_qbl_hap6	1238743	1238744	rs3132685	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Monounsaturated fatty acid levels	115,006 European ancestry individuals	NA	6p22.1		rs3132685-G	0.865725	2E-8		0.033954	[0.022-0.046] unit increase	NR [11722792] (imputed)	N
594	chr6_qbl_hap6	1238743	1238744	rs3132685	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small HDL	115,082 European ancestry individuals	NA	6p22.1		rs3132685-G	0.865719	5E-10		0.0372621	[0.026-0.049] unit increase	NR [11722792] (imputed)	N
594	chr6_qbl_hap6	1238743	1238744	rs3132685	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p22.1	NR	rs3132685-A	0.1302	2E-13		0.0131	[0.0096-0.0166] unit decrease	NR [7666894] (imputed)	N
594	chr6_qbl_hap6	1247908	1247909	rs17180647	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p22.1	NR	rs17180647-?	NR	4E-7		0.3884	[0.24-0.54] unit decrease	Illumina [at least 560000] (imputed)	N
594	chr6_qbl_hap6	1252818	1252819	rs7749944	30850646	Tziotzios C	2019-03-08	Nat Commun	Genome-wide association study in frontal fibrosing alopecia identifies four susceptibility loci including HLA-B*07:02.	Frontal fibrosing alopecia	1,016 European ancestry cases, 4,145 European ancestry controls		6p22.1	NR	rs7749944-?	0.006	8E-42		10.06	[7.2-14.1]	Illumina [~ 8000000] (imputed)	N
594	chr6_qbl_hap6	1257647	1257648	rs12110437	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	76 Han Chinese ancestry cases, 889 Han Chinese ancestry controls	NA	6p22.1	HLA-G	rs12110437-?	NR	2E-10				Illumina [3403929] (imputed)	N
594	chr6_qbl_hap6	1263503	1263504	rs7758512	20041166	Fellay J	2009-12-24	PLoS Genet	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	6p22.1	HLA-A, ZNRD1, RNF39	rs7758512-?	NR	2E-8	(progression)			Illumina [NR]	N
594	chr6_qbl_hap6	1263875	1263876	rs3094146	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total concentration of lipoprotein particles	115,082 European ancestry individuals	NA	6p22.1		rs3094146-G	0.871463	2E-9		0.0352048	[0.024-0.047] unit increase	NR [11722792] (imputed)	N
594	chr6_qbl_hap6	1263875	1263876	rs3094146	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Polyunsaturated fatty acid levels	115,006 European ancestry individuals	NA	6p22.1		rs3094146-G	0.871472	2E-13		0.0443955	[0.033-0.056] unit increase	NR [11722792] (imputed)	N
594	chr6_qbl_hap6	1263875	1263876	rs3094146	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6p22.1		rs3094146-G	0.871463	1E-8		0.0355971	[0.023-0.048] unit decrease	NR [11722792] (imputed)	N
594	chr6_qbl_hap6	1263875	1263876	rs3094146	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphoglycerides levels	115,006 European ancestry individuals	NA	6p22.1		rs3094146-G	0.871472	3E-10		0.0370038	[0.026-0.049] unit increase	NR [11722792] (imputed)	N
594	chr6_qbl_hap6	1263875	1263876	rs3094146	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphatidylcholine levels	115,006 European ancestry individuals	NA	6p22.1		rs3094146-G	0.871472	3E-9		0.0343894	[0.023-0.046] unit increase	NR [11722792] (imputed)	N
594	chr6_qbl_hap6	1263875	1263876	rs3094146	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	6p22.1		rs3094146-G	0.871463	5E-10		0.0351913	[0.024-0.046] unit increase	NR [11722792] (imputed)	N
594	chr6_qbl_hap6	1263875	1263876	rs3094146	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium HDL particles	115,082 European ancestry individuals	NA	6p22.1		rs3094146-G	0.871463	2E-11		0.0384568	[0.027-0.05] unit increase	NR [11722792] (imputed)	N
594	chr6_qbl_hap6	1263875	1263876	rs3094146	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of HDL particles	115,082 European ancestry individuals	NA	6p22.1		rs3094146-G	0.871463	4E-10		0.0365016	[0.025-0.048] unit increase	NR [11722792] (imputed)	N
594	chr6_qbl_hap6	1263875	1263876	rs3094146	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	6p22.1		rs3094146-G	0.871463	2E-9		0.034562	[0.023-0.046] unit increase	NR [11722792] (imputed)	N
594	chr6_qbl_hap6	1263875	1263876	rs3094146	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein A1 levels	115,082 European ancestry individuals	NA	6p22.1		rs3094146-G	0.871463	9E-11		0.036855	[0.026-0.048] unit increase	NR [11722792] (imputed)	N
594	chr6_qbl_hap6	1263875	1263876	rs3094146	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p22.1	ZNRD1-AS1	rs3094146-C	NR	4E-10		0.0289428	[0.02-0.038] unit decrease	Affymetrix [323858] (imputed)	N
594	chr6_qbl_hap6	1263875	1263876	rs3094146	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Help-seeking from a GP (without major depressive disorder symptoms)	8,632 British ancestry cases, 49,493 British ancestry controls	NA	6p22.1	NR	rs3094146-G	0.87	5E-8		1.1494253	[1.10-1.20]	NR [5276842] (imputed)	N
594	chr6_qbl_hap6	1263875	1263876	rs3094146	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p22.1	NR	rs3094146-C	0.1057	7E-7	(EA)	0.0543	[0.033-0.076] unit decrease	Illumina [~ 11800000] (imputed)	N
594	chr6_qbl_hap6	1266840	1266841	rs4313034	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p22.1		rs4313034-T	0.825373	2E-18		1.048594	[1.04-1.06]	Affymetrix, Illumina [9851866] (imputed)	N
594	chr6_qbl_hap6	1266840	1266841	rs4313034	21900946	Nakabayashi K	2011-09-08	J Hum Genet	Identification of independent risk loci for Graves' disease within the MHC in the Japanese population.	Graves' disease	1,119 Japanese ancestry cases, 2,718 Japanese ancestry controls	432 Japanese ancestry cases, 1,157 Japanese ancestry controls	6p22.1	MHC	rs4313034-T	0.83	2E-15		1.67	[1.47-1.90]	Perlegen [268068]	N
594	chr6_qbl_hap6	1270771	1270772	rs886997	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Asthma	13,015 East Asian ancestry cases, 162,933 East Asian ancestry controls	NA	6p22.1		rs886997-T	0.201391947	2E-10		0.10704092	[0.074-0.14] unit increase	Illumina [13429513] (imputed)	N
594	chr6_qbl_hap6	1271254	1271255	rs4713281	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p22.1	HLA-J, NCRNA00171	rs4713281-A	0.28	1E-6	(EA)	1.97	[1.49-2.59]	Illumina [up to 547389]	N
594	chr6_qbl_hap6	1279247	1279248	rs3115631	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	ZNRD1-AS1	rs3115631-A	NR	4E-17		0.0400652	[0.031-0.049] unit decrease	Affymetrix [323858] (imputed)	N
594	chr6_qbl_hap6	1279247	1279248	rs3115631	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	ZNRD1-AS1	rs3115631-A	NR	2E-16		0.0390685	[0.03-0.048] unit decrease	Affymetrix [127266] (imputed)	N
594	chr6_qbl_hap6	1279247	1279248	rs3115631	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Major depressive disorder (lifetime)	16,301 British ancestry cases, 50,870 British ancestry controls	NA	6p22.1	NR	rs3115631-?	NR	4E-7		1.1037527	[1.06-1.15]	NR [5276842] (imputed)	N
594	chr6_qbl_hap6	1279247	1279248	rs3115631	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Help-seeking from a GP	113,262 British ancestry cases, 219,360 British ancestry controls	NA	6p22.1	NR	rs3115631-T	0.874	3E-13		1.059322	[1.04-1.08]	NR [5276842] (imputed)	N
594	chr6_qbl_hap6	1294646	1294647	rs62388754	30850646	Tziotzios C	2019-03-08	Nat Commun	Genome-wide association study in frontal fibrosing alopecia identifies four susceptibility loci including HLA-B*07:02.	Frontal fibrosing alopecia	1,016 European ancestry cases, 4,145 European ancestry controls		6p22.1	NR	rs62388754-?	0.058	5E-32		2.76	[2.33-3.27]	Illumina [~ 8000000] (imputed)	N
594	chr6_qbl_hap6	1298705	1298706	rs4711207	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Allergic rhinitis	4,387 European ancestry cases, 471,273 European ancestry controls, 7,897 East Asian ancestry cases, 153,666 East Asian ancestry controls	NA	6p22.1		rs4711207-A	NR	2E-8		0.087	[0.057-0.117] unit decrease	Affymetrix, Illumina [25843170] (imputed)	N
594	chr6_qbl_hap6	1298705	1298706	rs4711207	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p22.1	NR	rs4711207-A	0.366	3E-19	(IFNAR2_of_CD20p)			Illumina [5084123] (imputed)	N
594	chr6_qbl_hap6	1301702	1301703	rs3910312	35232999	Garcia-Etxebarria K	2022-03-01	Sci Rep	Local genetic variation of inflammatory bowel disease in Basque population and its effect in risk prediction.	Ulcerative colitis	208 European ancestry cases, 935 European ancestry controls	NA	6p22.1		rs3910312-C	0.255	7E-7		1.8		Illumina [5409651] (imputed)	N
594	chr6_qbl_hap6	1306829	1306830	rs9261224	31217265	Sliz E	2019-06-19	J Med Genet	Genome-wide association study identifies seven novel loci associating with circulating cytokines and cell adhesion molecules in Finns.	Interleukin-1-beta levels	13,577 Finnish ancestry individuals	NA	6p22.1	HLA	rs9261224-T	0.035	1E-9		0.261	unit increase	Illumina [NR] (imputed)	N
594	chr6_qbl_hap6	1310027	1310028	rs6917603	31217265	Sliz E	2019-06-19	J Med Genet	Genome-wide association study identifies seven novel loci associating with circulating cytokines and cell adhesion molecules in Finns.	Interleukin-1-beta levels	13,577 Finnish ancestry individuals	NA	6p22.1	HLA	rs6917603-C	0.251	2E-12		0.163	unit decrease	Illumina [NR] (imputed)	N
594	chr6_qbl_hap6	1310027	1310028	rs6917603	22286219	Kettunen J	2012-01-29	Nat Genet	Genome-wide association study identifies multiple loci influencing human serum metabolite levels.	Lipid metabolism phenotypes	8,330 European ancestry individuals	NA	6p22.1	PPP1R11	rs6917603-?	NR	3E-29	(XXL-VLDL-P)	0.24	[0.2-0.28] unit decrease	Illumina [~ 7700000] (imputed)	N
595	chr6_qbl_hap6	1316073	1316074	rs9261259	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	ZNRD1-AS1	rs9261259-C	NR	2E-16		0.0319539	[0.024-0.04] unit decrease	Affymetrix [127266] (imputed)	N
595	chr6_qbl_hap6	1318499	1318500	rs259919	32276964	Shete S	2020-04-10	Cancer Res	A genome-wide association study identifies two novel susceptible regions for squamous cell carcinoma of the head and neck.	Head and neck squamous cell carcinoma	2,171 European ancestry cases, 4,493 European ancestry controls	5,205 European ancestry cases, 3,232 European ancestry controls	6p22.1	ZNRD1-AS1	rs259919-A	0.28	3E-9		1.17	[1.11-1.24]	Illumina [7858089] (imputed)	N
595	chr6_qbl_hap6	1318499	1318500	rs259919	20041166	Fellay J	2009-12-24	PLoS Genet	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	6p22.1	ZNRD1, C6orf12	rs259919-?	NR	3E-7	(setpoint)			Illumina [NR]	N
595	chr6_qbl_hap6	1323115	1323116	rs9261269	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p22.1	ZintergenicD1	rs9261269-A		4E-32		0.038	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
595	chr6_qbl_hap6	1325501	1325502	rs8321	23453885	Smoller JW	2013-02-27	Lancet	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NA	6p22.1	MHC region	rs8321-?	NR	8E-9	(5 degree of freedom test)	1.081	[1.04-1.12]	NR [1252901] (imputed)	N
595	chr6_qbl_hap6	1325501	1325502	rs8321	19115949	Limou S	2009-01-01	J Infect Dis	Genomewide association study of an AIDS-nonprogression cohort emphasizes the role played by HLA genes (ANRS Genomewide Association Study 02).	AIDS progression	275 European ancestry seropositive non-progressors, 86 European ancestry seropositive rapid progressors, 1,352 European ancestry seronegative controls	(see Fellay 2007)	6p22.1	ZNRD1, RNF39	rs8321-G	NR	5E-7				Illumina [291119]	N
595	chr6_qbl_hap6	1328319	1328320	rs9261281	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p22.1		rs9261281-?	NR	1E-9		0.0377761	[0.026-0.05] unit increase	Affymetrix [20259828] (imputed)	N
595	chr6_qbl_hap6	1330968	1330969	rs6539	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	6p22.1	NR	rs6539-?	NR	3E-6		0.0618	[0.036-0.088] unit increase	Illumina [at least 560000] (imputed)	N
595	chr6_qbl_hap6	1332213	1332214	rs2301753	26534935	Weng L	2015-11-03	Physiol Genomics	Genetic loci associated with nonobstructive coronary artery disease in Caucasian women.	Nonobstructive coronary artery disease	332 European ancestry female cases, 1,003 European ancestry female controls	NA	6p22.1	RNF39	rs2301753-?	0.883	7E-7		2.5	[1.75-3.57]	Illumina [52371]	N
595	chr6_qbl_hap6	1333264	1333265	rs10947050	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Chickenpox	107,769 European ancestry cases, 15,982 European ancestry controls	NA	6p22.1	NR	rs10947050-?	NR	1E-10		0.0904	[0.063-0.118] unit decrease	Illumina [at least 560000] (imputed)	N
595	chr6_qbl_hap6	1335973	1335974	rs142979264	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs142979264-?		6E-8		1.06	[1.04-1.09]	Illumina [7645193] (imputed)	N
595	chr6_qbl_hap6	1335973	1335974	rs142979264	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs142979264-?		7E-9		1.84	[1.50-2.26]	Illumina [7645193] (imputed)	N
595	chr6_qbl_hap6	1337358	1337359	rs3132682	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	6p22.1	RNF39	rs3132682-C	0.5898	2E-30		0.04162196	[0.035-0.049] unit increase	Affymetrix [~ 2500000] (imputed)	N
595	chr6_qbl_hap6	1338169	1338170	rs1150735	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	RNF39	rs1150735-A	NR	5E-8		5.462	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
595	chr6_qbl_hap6	1338968	1338969	rs1245372	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of linoleic acid to total fatty acids	115,006 European ancestry individuals	NA	6p22.1		rs1245372-A	0.830801	3E-8		0.029543	[0.019-0.04] unit decrease	NR [11722792] (imputed)	N
595	chr6_qbl_hap6	1345911	1345912	rs1264712	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	AL669914.1	rs1264712-A	NR	9E-17		0.0323321	[0.025-0.04] unit decrease	Affymetrix [323858] (imputed)	N
595	chr6_qbl_hap6	1345911	1345912	rs1264712	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p22.1	AL669914.1	rs1264712-A	NR	4E-10		0.0241409	[0.017-0.032] unit decrease	Affymetrix [323858] (imputed)	N
595	chr6_qbl_hap6	1348780	1348781	rs142292417	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	6p22.1		rs142292417-T	0.984003	1E-8		0.0906224	[0.059-0.122] unit increase	NR [11722792] (imputed)	N
595	chr6_qbl_hap6	1353013	1353014	rs3132681	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p22.1		rs3132681-C	0.603	1E-38				Affymetrix [10369434] (imputed)	N
595	chr6_qbl_hap6	1353013	1353014	rs3132681	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	ENSG00000252901	rs3132681-A	NR	2E-8		5.598	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
595	chr6_qbl_hap6	1354317	1354318	rs9261387	28394258	Wild PS	2017-04-10	J Clin Invest	Large-scale genome-wide analysis identifies genetic variants associated with cardiac structure and function.	Isovolumetric relaxation time	21,852 European ancestry individuals	14,787 European ancestry individuals	6p22.1	TRIM31	rs9261387-C	0.92	7E-7		0.003	[0.001-0.005] unit increase	Affymetrix, Illumina [at least 283291] (imputed)	N
595	chr6_qbl_hap6	1356625	1356626	rs1264705	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium HDL	115,082 European ancestry individuals	NA	6p22.1		rs1264705-G	0.868792	2E-12		0.0396576	[0.029-0.051] unit increase	NR [11722792] (imputed)	N
595	chr6_qbl_hap6	1358099	1358100	rs1156533	33888516	Zheng T	2021-04-22	Gut	Genome-wide analysis of 944 133 individuals provides insights into the etiology of haemorrhoidal disease.	Haemorrhoidal disease	218,920 European ancestry cases, 725,213 European ancestry controls	NA	6p22.1	TRIM31	rs1156533-?	0.2952	2E-8		0.98	[0.97-0.98]	Affymetrix, Illumina [8494288] (imputed)	N
595	chr6_qbl_hap6	1358493	1358494	rs17187854	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	6p22.1	intergenic	rs17187854-T	0.0032	3E-12		0.2201749	[0.16-0.28] unit decrease	Affymetrix [~ 2500000] (imputed)	N
595	chr6_qbl_hap6	1358981	1358982	rs916570	31272903	Sunadome H	2019-07-01	Allergol Int	Correlation between eosinophil count, its genetic background and body mass index: The Nagahama Study.	Eosinophil counts	4,650 East Asian ancestry individuals	NA	6p22.1	NR	rs916570-G	0.19	1E-7		0.1384	NR unit increase	Illumina [103680] (imputed)	N
595	chr6_qbl_hap6	1358981	1358982	rs916570	31272903	Sunadome H	2019-07-01	Allergol Int	Correlation between eosinophil count, its genetic background and body mass index: The Nagahama Study.	Eosinophil counts	4,206 East Asian ancestry individuals	NA	6p22.1	NR	rs916570-G	0.19	3E-7		0.1428	NR unit increase	Illumina [103680] (imputed)	N
595	chr6_qbl_hap6	1359960	1359962	rs143211693	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	6p22.1	Intergenic	rs143211693-?	NR	5E-6		0.0195207	[0.011-0.028] unit increase	Illumina [13519193] (imputed)	N
595	chr6_qbl_hap6	1359960	1359962	rs143211693	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p22.1	Intergenic	rs143211693-?	NR	2E-6		0.0186889	[0.011-0.026] unit increase	Illumina [13520550] (imputed)	N
595	chr6_qbl_hap6	1359960	1359962	rs143211693	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	6p22.1	Intergenic	rs143211693-?	NR	4E-9		0.026814	[0.018-0.036] unit increase	Illumina [13520550] (imputed)	N
595	chr6_qbl_hap6	1360534	1360535	rs1264697	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	76 Han Chinese ancestry cases, 889 Han Chinese ancestry controls	NA	6p22.1	TRIM31	rs1264697-?	NR	1E-8	(conditional on rs12110437)			Illumina [3403929] (imputed)	N
595	chr6_qbl_hap6	1361579	1361580	rs13214608	33831438	Williams JE	2021-04-05	Genomics	Key genetic variants associated with variation of milk oligosaccharides from diverse human populations.	Human milk oligosaccharide concentration (lacto-N-fucopentaose III) in non-secretors	90 European, Sub-Saharan African, Hispanic or unknown ancestry individuals	NA	6p22.1		rs13214608-?	NR	3E-11				Illumina [1128286]	N
595	chr6_qbl_hap6	1362947	1362948	rs1111180	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	6p22.1	TRIM31-AS1	rs1111180-C	0.5667	4E-37		0.04561007	[0.039-0.053] unit decrease	Affymetrix [~ 2500000] (imputed)	N
595	chr6_qbl_hap6	1362947	1362948	rs1111180	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	6p22.1	TRIM31-AS1	rs1111180-C	0.5666	2E-35		0.04474978	[0.038-0.052] unit decrease	Affymetrix [~ 2500000] (imputed)	N
595	chr6_qbl_hap6	1363902	1363903	rs1110446	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6p22.1		rs1110446-?	NR	3E-6		1.05914	[1.04-1.08]	NR [685523]	N
595	chr6_qbl_hap6	1363902	1363903	rs1110446	29784950	Sawai H	2018-05-21	Sci Rep	Genome-wide association study identified new susceptible genetic variants in HLA class I region for hepatitis B virus-related hepatocellular carcinoma.	Hepatocellular carcinoma in hepatitis B infection	473 Japanese ancestry chronic hepatitis and hepatocellular carcinoma cases, 516 Japanese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma	153 Japanese ancestry chronic hepatitis and hepatocellular carcinoma cases, 614 Japanese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma, 94 Chinese ancestry chronic hepatitis and hepatocellular carcinoma cases, 187 Chinese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma, 185 Thai ancestry chronic hepatitis and hepatocellular carcinoma cases, 198 Thai ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma	6p22.1	HLA	rs1110446-?	NR	9E-13		1.93	[1.57-2.37] Japanese	Affymetrix [447830]	N
595	chr6_qbl_hap6	1363902	1363903	rs1110446	29784950	Sawai H	2018-05-21	Sci Rep	Genome-wide association study identified new susceptible genetic variants in HLA class I region for hepatitis B virus-related hepatocellular carcinoma.	Hepatocellular carcinoma in hepatitis B infection	473 Japanese ancestry chronic hepatitis and hepatocellular carcinoma cases, 516 Japanese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma	153 Japanese ancestry chronic hepatitis and hepatocellular carcinoma cases, 614 Japanese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma, 94 Chinese ancestry chronic hepatitis and hepatocellular carcinoma cases, 187 Chinese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma, 185 Thai ancestry chronic hepatitis and hepatocellular carcinoma cases, 198 Thai ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma	6p22.1	HLA	rs1110446-?	NR	3E-10	(Japanese)	1.93	[1.57-2.37]	Affymetrix [447830]	N
595	chr6_qbl_hap6	1364295	1364296	rs1116221	32771030	Tangtanatakul P	2020-08-08	Arthritis Res Ther	Meta-analysis of genome-wide association study identifies FBN2 as a novel locus associated with systemic lupus erythematosus in Thai population.	Systemic lupus erythematosus	487 Thai cases, 1,606 Thai controls	405 Thai cases, 1,590 Thai controls	6p22.1	TRIM31	rs1116221-A	0.08	3E-6		1.594	[NR]	Illumina [421909] (imputed)	N
595	chr6_qbl_hap6	1365590	1365591	rs3094136	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p22.1	NR	rs3094136-C	0.44	2E-6	(IFNAR2_of_CD4p_T)			Illumina [5084123] (imputed)	N
595	chr6_qbl_hap6	1365773	1365774	rs111537560	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mumps	31,227 European ancestry cases, 54,153 European ancestry controls	NA	6p22.1	NR	rs111537560-?	NR	5E-16		0.5917	[0.45-0.74] unit increase	Illumina [at least 560000] (imputed)	N
595	chr6_qbl_hap6	1366160	1366161	rs3132680	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6p22.1	RNF39	rs3132680-?	NR	7E-6	(SM 18:0)	0.17183183	[0.097-0.247] unit decrease	Affymetrix [at least 2500000] (imputed)	N
595	chr6_qbl_hap6	1366224	1366225	rs2517664	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p22.1		rs2517664-T	0.816537	9E-13		1.0407012	[1.03-1.05]	Affymetrix, Illumina [9851866] (imputed)	N
595	chr6_qbl_hap6	1366224	1366225	rs2517664	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	TRIM31-AS1	rs2517664-T	NR	1E-8		5.707	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
595	chr6_qbl_hap6	1366395	1366396	rs6915823	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	6p22.1	NR	rs6915823-?	NR	1E-23		10.046	NR z score decrease	Illumina [at least 830937] (imputed)	N
595	chr6_qbl_hap6	1366741	1366742	rs7767188	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	6p22.1	NR	rs7767188-A	0.21	2E-8		1.06	[1.04-1.08]	Illumina [20370935] (imputed)	N
595	chr6_qbl_hap6	1366812	1366813	rs2844795	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total phospholipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	6p22.1		rs2844795-C	0.480583	2E-9		0.0234643	[0.016-0.031] unit decrease	NR [11722792] (imputed)	N
595	chr6_qbl_hap6	1366812	1366813	rs2844795	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	6p22.1		rs2844795-C	0.480583	2E-9		0.0242799	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
595	chr6_qbl_hap6	1366812	1366813	rs2844795	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total fatty acid levels	115,006 European ancestry individuals	NA	6p22.1		rs2844795-C	0.480588	2E-9		0.0242374	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
595	chr6_qbl_hap6	1366812	1366813	rs2844795	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholines levels	115,006 European ancestry individuals	NA	6p22.1		rs2844795-C	0.480588	6E-9		0.0224748	[0.015-0.03] unit decrease	NR [11722792] (imputed)	N
595	chr6_qbl_hap6	1366812	1366813	rs2844795	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-6 fatty acid levels	115,006 European ancestry individuals	NA	6p22.1		rs2844795-C	0.480588	5E-13		0.0289827	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
595	chr6_qbl_hap6	1366812	1366813	rs2844795	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Linoleic acid levels	115,006 European ancestry individuals	NA	6p22.1		rs2844795-C	0.480588	4E-14		0.0305085	[0.023-0.038] unit decrease	NR [11722792] (imputed)	N
595	chr6_qbl_hap6	1366812	1366813	rs2844795	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	6p22.1		rs2844795-C	0.480583	3E-8		0.0227871	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
595	chr6_qbl_hap6	1367037	1367038	rs2517601	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in diabetes	70,762 European ancestry individuals, 20,967 African American individuals	NA	6p22.1	TRIM31	rs2517601-C	0.115	4E-12		0.956	[0.69-1.23] unit decrease	Affymetrix [NR] (imputed)	N
595	chr6_qbl_hap6	1367037	1367038	rs2517601	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p22.1	NR	rs2517601-C	0.1326	5E-13		0.0126	[0.0093-0.0159] unit decrease	NR [7666894] (imputed)	N
595	chr6_qbl_hap6	1367275	1367276	rs78026509	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	6p22.1	TRIM31, TRIM31-AS1	rs78026509-G	0.0759	2E-9		0.04028003	[0.027-0.053] unit decrease	Affymetrix [~ 2500000] (imputed)	N
595	chr6_qbl_hap6	1368067	1368068	rs2523992	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p22.1	NR	rs2523992-G	0.1571	2E-7	(EA)	0.0468	[0.029-0.064] unit decrease	Illumina [~ 11800000] (imputed)	N
595	chr6_qbl_hap6	1368829	1368830	rs2023472	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p22.1		rs2023472-A	0.411	6E-25				Affymetrix [10369434] (imputed)	N
595	chr6_qbl_hap6	1368829	1368830	rs2023472	23417110	Tin A	2013-02-16	Hum Genet	Genome-wide association study identified the human leukocyte antigen region as a novel locus for plasma beta-2 microglobulin.	Beta-2 microglubulin plasma levels	6,728 European ancestry individuals		6p22.1	TRIM31	rs2023472-A	0.38	3E-15		0.03	[0.022-0.038] unit increase	Affymetrix [2500000] (imputed)	N
595	chr6_qbl_hap6	1369082	1369083	rs11961190	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	6p22.1	TRIM31, TRIM31-AS1	rs11961190-T	0.00312500000000004	2E-22		0.19694449	[0.16-0.24] unit decrease	Affymetrix [93095623] (imputed)	N
595	chr6_qbl_hap6	1369082	1369083	rs11961190	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6p22.1	TRIM31, TRIM31-AS1	rs11961190-T	0.00312500000000004	1E-23		0.20271449	[0.16-0.24] unit decrease	Affymetrix [93095623] (imputed)	N
595	chr6_qbl_hap6	1369082	1369083	rs11961190	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	6p22.1	TRIM31, TRIM31-AS1	rs11961190-T	0.00311799999999995	3E-29		0.22552978	[0.19-0.26] unit decrease	Affymetrix [93095623] (imputed)	N
595	chr6_qbl_hap6	1369082	1369083	rs11961190	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6p22.1	TRIM31, TRIM31-AS1	rs11961190-T	0.00311700000000004	4E-27		0.21662813	[0.18-0.26] unit decrease	Affymetrix [93095623] (imputed)	N
595	chr6_qbl_hap6	1369619	1369620	rs9261418	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	6p22.1	TRIM15	rs9261418-A	0.144604	2E-8		5.61	z score increase	NR [10847151] (imputed)	N
595	chr6_qbl_hap6	1370095	1370096	rs9378220	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	6p22.1	TRIM31	rs9378220-?	NR	4E-18		0.0309	[0.025-0.037] unit increase	Affymetrix [5701386] (imputed)	N
595	chr6_qbl_hap6	1370189	1370190	rs2523990	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	6p22.1	TRIM31, TRIM31-AS1	rs2523990-G	0.538375	2E-32		0.029605733	[0.025-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
595	chr6_qbl_hap6	1370189	1370190	rs2523990	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6p22.1	TRIM31, TRIM31-AS1	rs2523990-G	0.538376	5E-71		0.044279587	[0.039-0.049] unit decrease	Affymetrix [93095623] (imputed)	N
595	chr6_qbl_hap6	1371236	1371237	rs2523989	33909500	Moll M	2021-04-28	Am J Physiol Lung Cell Mol Physiol	A Systematic Analysis of Protein-altering Exonic Variants in Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease	up to 31,465 European ancestry cases, up to 203,688 European ancestry controls, up to 1,413 African ancestry cases, up to 6,080 African ancestry controls, up to 287 East Asian ancestry cases, up to 7,484 East Asian ancestry controls, up to 61 Hispanic cases, up to 613 Hispanic controls	NA	6p22.1	TRIM31	rs2523989-T	0.17	1E-10		1.09	[1.06 -1.12]	Illumina [at least 109036]	N
595	chr6_qbl_hap6	1371236	1371237	rs2523989	25936594	Tomer Y	2015-04-27	J Autoimmun	Genome wide identification of new genes and pathways in patients with both autoimmune thyroiditis and type 1 diabetes.	Type 1 diabetes and autoimmune thyroid diseases	346 European ancestry cases, 727 European ancestry controls	185 European ancestry cases, 340 European ancestry controls	6p22.1	TRIM31	rs2523989-A	NR	2E-8		1.7499		Illumina [514008]	N
595	chr6_qbl_hap6	1372952	1372953	rs2523987	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p22.1	TRIM31, TRIM31-AS1, TRIM40, SNORA48	rs2523987-C	0.1149598	2E-13	(EA, MHC class I polypeptide-related sequence A)	0.4957	[0.36-0.63] unit increase	Affymetrix [509946]	N
595	chr6_qbl_hap6	1374067	1374068	rs9261425	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	6p22.1	NR	rs9261425-?	NR	6E-7		0.0545	[0.033-0.076] unit increase	Illumina [at least 560000] (imputed)	N
595	chr6_qbl_hap6	1374701	1374702	rs28780084	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p22.1	NR	rs28780084-?	NR	9E-8		0.0841	[0.053-0.115] unit decrease	Illumina [at least 560000] (imputed)	N
595	chr6_qbl_hap6	1376667	1376668	rs2523978	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	6p22.1	TRIM31	rs2523978-C	0.869967	4E-24		0.0286531	[0.023-0.034] unit increase	Affymetrix [NR] (imputed)	N
595	chr6_qbl_hap6	1376667	1376668	rs2523978	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	6p22.1	TRIM31	rs2523978-C	0.869885	7E-28		0.031888	[0.026-0.038] unit increase	Affymetrix [NR] (imputed)	N
595	chr6_qbl_hap6	1379381	1379382	rs9261431	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p22.1	NR	rs9261431-?	NR	2E-19		0.1221	[0.095-0.149] unit increase	Illumina [at least 560000] (imputed)	N
595	chr6_qbl_hap6	1380564	1380565	rs115254023	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6p22.1		rs115254023-T	0.018886	8E-29		0.092888236	[0.077-0.109] unit increase	Affymetrix [93095623] (imputed)	N
595	chr6_qbl_hap6	1385892	1385893	rs1419674	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p22.1	NR	rs1419674-T	0.02787	7E-9	(SBDS)	0.03953	NR unit increase	Illumina [1671387] (imputed)	N
595	chr6_qbl_hap6	1386094	1386095	rs2517592	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	SNORA48	rs2517592-T	NR	5E-8		5.465	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
595	chr6_qbl_hap6	1386321	1386322	rs10947055	21348951	Parsa A	2011-02-01	Clin Transl Sci	Hypertrophy-associated polymorphisms ascertained in a founder cohort applied to heart failure risk and mortality.	Cardiac hypertrophy	851 Old Order Amish individuals	NA	6p22.1	TRIM38	rs10947055-?	NR	2E-7	(additive, recessive)			Affymetrix [361034]	N
595	chr6_qbl_hap6	1387070	1387071	rs2844790	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	SNORA48	rs2844790-C	NR	4E-10		6.271	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
595	chr6_qbl_hap6	1387070	1387071	rs2844790	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p22.1	NR	rs2844790-?	NR	1E-8		0.1888	[0.12-0.25] unit increase	Illumina [at least 560000] (imputed)	N
595	chr6_qbl_hap6	1393932	1393933	rs61211515	29404672	Roshandel D	2018-02-05	Diabetologia	Meta-genome-wide association studies identify a locus on chromosome 1 and multiple variants in the MHC region for serum C-peptide in type 1 diabetes.	Stimulated C-peptide levels in type I diabetes	1,303 European ancestry individuals	NA	6p22.1	MHC	rs61211515-?	0.16	1E-7		0.39	[0.25-0.53] unit decrease	Illumina [8978838] (imputed)	N
595	chr6_qbl_hap6	1393932	1393933	rs61211515	29404672	Roshandel D	2018-02-05	Diabetologia	Meta-genome-wide association studies identify a locus on chromosome 1 and multiple variants in the MHC region for serum C-peptide in type 1 diabetes.	C-peptide levels in type I diabetes	3,479 European ancestry individuals	NA	6p22.1	MHC	rs61211515-?	0.16	2E-6				Illumina [7988630] (imputed)	N
595	chr6_qbl_hap6	1394521	1394522	rs115333019	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	6p22.1	SNORA48, TRIM40	rs115333019-G	0.00916799999999995	8E-43		0.1634603	[0.14-0.19] unit decrease	Affymetrix [93095623] (imputed)	N
595	chr6_qbl_hap6	1394612	1394613	rs1362104	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	SNORA48	rs1362104-A	NR	2E-10		6.398	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
595	chr6_qbl_hap6	1398100	1398101	rs28780086	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	6p22.1	TRIM40	rs28780086-G	0.023328	1E-25		0.078185886	[0.064-0.093] unit increase	Affymetrix [93095623] (imputed)	N
595	chr6_qbl_hap6	1398100	1398101	rs28780086	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	6p22.1	TRIM40	rs28780086-G	0.023332	8E-30		0.093978085	[0.078-0.11] unit decrease	Affymetrix [93095623] (imputed)	N
595	chr6_qbl_hap6	1401629	1401630	rs9261484	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	6p22.1	TRIM40	rs9261484-T	0.2451	2E-8		0.0635	[0.042-0.085] unit decrease	NR [7784415] (imputed)	N
595	chr6_qbl_hap6	1403805	1403805	rs146464922	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	6p22.1	TRIM40	rs146464922-CTT	0.014425	8E-11		0.05988576	[0.042-0.078] unit increase	Affymetrix [93095623] (imputed)	N
595	chr6_qbl_hap6	1404017	1404018	rs117432766	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6p22.1	TRIM40	rs117432766-A	0.016714	1E-25		0.09170394	[0.075-0.109] unit increase	Affymetrix [93095623] (imputed)	N
595	chr6_qbl_hap6	1406497	1406498	rs12202131	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6p22.1	TRIM40	rs12202131-A	0.052983	2E-12		0.06297606	[0.045-0.081] unit increase	Affymetrix [93095623] (imputed)	N
595	chr6_qbl_hap6	1406902	1406903	rs3815082	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p22.1	NR	rs3815082-G	0.295	9E-12	(IFNAR2_of_CD20p)			Illumina [5084123] (imputed)	N
595	chr6_qbl_hap6	1407254	1407255	rs2256146	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p22.1	NR	rs2256146-C	0.02787	7E-9	(SBDS)	0.03953	NR unit increase	Illumina [1671387] (imputed)	N
595	chr6_qbl_hap6	1408267	1408268	rs115651142	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p22.1	NR	rs115651142-?	NR	6E-7		0.324	[0.19-0.45] unit decrease	Illumina [at least 560000] (imputed)	N
595	chr6_qbl_hap6	1412837	1412838	rs9468692	20041166	Fellay J	2009-12-24	PLoS Genet	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	6p22.1	TRIM10	rs9468692-?	NR	1E-6	(setpoint)			Illumina [NR]	N
595	chr6_qbl_hap6	1413584	1413585	rs9468693	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	6p22.1	TRIM10	rs9468693-C	0.071694	2E-29		0.0510031	[0.043-0.059] unit decrease	Affymetrix [93095623] (imputed)	N
595	chr6_qbl_hap6	1414407	1414408	rs2022065	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	6p22.1	TRIM10	rs2022065-T	0.296544	2E-49		0.041531093	[0.036-0.047] unit decrease	Affymetrix [93095623] (imputed)	N
595	chr6_qbl_hap6	1414407	1414408	rs2022065	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6p22.1	TRIM10	rs2022065-T	0.296544	4E-41		0.041549113	[0.035-0.048] unit decrease	Affymetrix [93095623] (imputed)	N
595	chr6_qbl_hap6	1414407	1414408	rs2022065	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	6p22.1	TRIM10	rs2022065-T	0.296537	4E-62		0.05393633	[0.048-0.06] unit decrease	Affymetrix [93095623] (imputed)	N
595	chr6_qbl_hap6	1414407	1414408	rs2022065	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	6p22.1	TRIM10	rs2022065-T	0.2963	3E-25		0.04064069	[0.033-0.048] unit decrease	Affymetrix [~ 2500000] (imputed)	N
595	chr6_qbl_hap6	1414407	1414408	rs2022065	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	6p22.1	TRIM10	rs2022065-T	0.2963	1E-23		0.03931364	[0.032-0.047] unit decrease	Affymetrix [~ 2500000] (imputed)	N
595	chr6_qbl_hap6	1414407	1414408	rs2022065	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	6p22.1	TRIM10	rs2022065-T	0.2963	3E-30		0.04433495	[0.037-0.052] unit decrease	Affymetrix [~ 2500000] (imputed)	N
595	chr6_qbl_hap6	1414407	1414408	rs2022065	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	6p22.1	TRIM10	rs2022065-T	0.2962	2E-35		0.04860256	[0.041-0.056] unit decrease	Affymetrix [~ 2500000] (imputed)	N
595	chr6_qbl_hap6	1414407	1414408	rs2022065	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	6p22.1	TRIM10	rs2022065-T	0.2962	1E-34		0.04804721	[0.04-0.056] unit decrease	Affymetrix [~ 2500000] (imputed)	N
595	chr6_qbl_hap6	1415340	1415341	rs116596081	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	6p22.1	TRIM10	rs116596081-A	0.011844	3E-46		0.14981039	[0.13-0.17] unit decrease	Affymetrix [93095623] (imputed)	N
595	chr6_qbl_hap6	1415340	1415341	rs116596081	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6p22.1	TRIM10	rs116596081-A	0.0118470000000001	6E-38		0.13759963	[0.12-0.16] unit decrease	Affymetrix [93095623] (imputed)	N
595	chr6_qbl_hap6	1417758	1417759	rs144731721	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Red cell distribution width	441,263 European ancestry individuals	NA	6p22.1		rs144731721-?	NR	1E-14		0.080611	[0.059-0.102] unit increase	NR [9800000] (imputed)	N
595	chr6_qbl_hap6	1417758	1417759	rs144731721	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean reticulocyte volume	436,944 European ancestry individuals	NA	6p22.1		rs144731721-?	NR	1E-42		0.142474	[0.12-0.16] unit increase	NR [9800000] (imputed)	N
595	chr6_qbl_hap6	1417758	1417759	rs144731721	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	6p22.1	TRIM10	rs144731721-T	0.00866500000000004	5E-16		0.096417926	[0.073-0.12] unit increase	Affymetrix [93095623] (imputed)	N
595	chr6_qbl_hap6	1417758	1417759	rs144731721	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	6p22.1	TRIM10	rs144731721-T	0.00867700000000005	2E-39		0.15744652	[0.13-0.18] unit increase	Affymetrix [93095623] (imputed)	N
595	chr6_qbl_hap6	1417758	1417759	rs144731721	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	6p22.1	TRIM10	rs144731721-T	0.00866699999999998	6E-12		0.083550446	[0.06-0.107] unit increase	Affymetrix [93095623] (imputed)	N
595	chr6_qbl_hap6	1417758	1417759	rs144731721	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	6p22.1	TRIM10	rs144731721-T	0.0068	4E-11		0.1617919	[0.11-0.21] unit increase	Affymetrix [~ 2500000] (imputed)	N
595	chr6_qbl_hap6	1419568	1419569	rs116113631	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	6p22.1	TRIM10	rs116113631-T	0.010294	3E-68		0.19197759	[0.17-0.21] unit decrease	Affymetrix [93095623] (imputed)	N
595	chr6_qbl_hap6	1419568	1419569	rs116113631	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6p22.1	TRIM10	rs116113631-T	0.010297	3E-66		0.19043158	[0.17-0.21] unit decrease	Affymetrix [93095623] (imputed)	N
595	chr6_qbl_hap6	1420505	1420505	rs148280884	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	6p22.1	TRIM10	rs148280884-CAT	0.0122	4E-25		0.1718773	[0.14-0.2] unit decrease	Affymetrix [~ 2500000] (imputed)	N
595	chr6_qbl_hap6	1420505	1420505	rs148280884	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	6p22.1	TRIM10	rs148280884-CAT	0.0122	2E-27		0.1797411	[0.15-0.21] unit decrease	Affymetrix [~ 2500000] (imputed)	N
595	chr6_qbl_hap6	1420505	1420505	rs148280884	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	6p22.1	TRIM10	rs148280884-CAT	0.0122	2E-23		0.1655507	[0.13-0.2] unit decrease	Affymetrix [~ 2500000] (imputed)	N
595	chr6_qbl_hap6	1420505	1420505	rs148280884	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	6p22.1	TRIM10	rs148280884-CAT	0.0122	6E-25		0.1707215	[0.14-0.2] unit decrease	Affymetrix [~ 2500000] (imputed)	N
595	chr6_qbl_hap6	1420751	1420752	rs1573296	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	6p22.1	TRIM10	rs1573296-G	0.1349	2E-11		0.03526502	[0.025-0.046] unit decrease	Affymetrix [~ 2500000] (imputed)	N
595	chr6_qbl_hap6	1420751	1420752	rs1573296	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	6p22.1	TRIM10	rs1573296-G	0.1349	1E-14		0.04046172	[0.03-0.051] unit decrease	Affymetrix [~ 2500000] (imputed)	N
595	chr6_qbl_hap6	1420819	1420820	rs1318638	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	6p22.1	TRIM10	rs1318638-T	0.0648	3E-9		0.04268956	[0.029-0.057] unit increase	Affymetrix [~ 2500000] (imputed)	N
595	chr6_qbl_hap6	1420819	1420820	rs1318638	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin concentration	172,851 European ancestry individuals	NA	6p22.1	TRIM10	rs1318638-T	0.0649	1E-20		0.06542649	[0.052-0.079] unit decrease	Affymetrix [~ 2500000] (imputed)	N
595	chr6_qbl_hap6	1421049	1421050	rs142460927	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	6p22.1	TRIM10	rs142460927-C	0.00303299999999995	5E-25		0.21333578	[0.17-0.25] unit decrease	Affymetrix [93095623] (imputed)	N
595	chr6_qbl_hap6	1421388	1421389	rs12212092	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	6p22.1	TRIM10	rs12212092-T	0.0644400000000001	6E-20		0.043098915	[0.034-0.052] unit decrease	Affymetrix [93095623] (imputed)	N
595	chr6_qbl_hap6	1421388	1421389	rs12212092	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	6p22.1	TRIM10	rs12212092-T	0.06443	7E-84		0.096261576	[0.087-0.106] unit decrease	Affymetrix [93095623] (imputed)	N
595	chr6_qbl_hap6	1421388	1421389	rs12212092	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	6p22.1	TRIM10	rs12212092-T	0.064469	1E-29		0.051481474	[0.043-0.06] unit decrease	Affymetrix [93095623] (imputed)	N
595	chr6_qbl_hap6	1421388	1421389	rs12212092	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6p22.1	TRIM10	rs12212092-T	0.064468	1E-30		0.09085926	[0.075-0.106] unit decrease	Affymetrix [93095623] (imputed)	N
595	chr6_qbl_hap6	1421388	1421389	rs12212092	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	6p22.1	TRIM10	rs12212092-T	0.0648	1E-24		0.07379727	[0.06-0.088] unit decrease	Affymetrix [~ 2500000] (imputed)	N
595	chr6_qbl_hap6	1421388	1421389	rs12212092	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	6p22.1	TRIM10	rs12212092-T	0.0648	8E-24		0.07307307	[0.059-0.087] unit decrease	Affymetrix [~ 2500000] (imputed)	N
595	chr6_qbl_hap6	1421388	1421389	rs12212092	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	6p22.1	TRIM10	rs12212092-T	0.0648	3E-24		0.07368067	[0.059-0.088] unit decrease	Affymetrix [~ 2500000] (imputed)	N
595	chr6_qbl_hap6	1424069	1424070	rs17188113	29562276	Venkateswaran S	2018-03-01	Inflamm Bowel Dis	Enhanced Contribution of HLA in Pediatric Onset Ulcerative Colitis.	Childhood onset ulcerative colitis	466 European ancestry cases, 2,099 European ancestry controls	NA	6p22.1	HLA	rs17188113-?		9E-7		1.8086454	[1.57-2.05]	Affymetrix [3996700] (imputed)	N
595	chr6_qbl_hap6	1424657	1424658	rs17194474	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	6p22.1	TRIM15	rs17194474-C	0.028724	4E-18		0.055055395	[0.043-0.067] unit decrease	Affymetrix [93095623] (imputed)	N
595	chr6_qbl_hap6	1428923	1428924	rs9368624	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p22.1	TRIM15, TRIM10, TRIM40, TRIM31-AS1, TRIM31, TRIM26, PAIP1P1	rs9368624-A	0.1996982	3E-11	(EA, MHC class I polypeptide-related sequence A)	0.3704	[0.26-0.48] unit decrease	Affymetrix [509946]	N
595	chr6_qbl_hap6	1430595	1430596	rs1018846	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	6p22.1	TRIM15	rs1018846-A	0.064503	4E-25		0.046360865	[0.038-0.055] unit increase	Affymetrix [93095623] (imputed)	N
595	chr6_qbl_hap6	1430812	1430813	rs2107195	30037793	Haapasalo K	2018-09-21	Infect Immun	The Psoriasis Risk Allele <i>HLA-C*06:02</i> Shows Evidence of Association with Chronic or Recurrent Streptococcal Tonsillitis.	Tonsillitis	95 Finnish cases, 504 Finnish controls	NA	6p22.1	TRIM10, TRIM15	rs2107195-?		5E-6		3.7		Illumina [100000]	N
595	chr6_qbl_hap6	1431108	1431109	rs1029239	34642315	Ferreiro-Iglesias A	2021-10-12	Nat Commun	Germline determinants of humoral immune response to HPV-16 protect against oropharyngeal cancer.	Human papilloma virus 16 positive oropharyngeal cancer	1,078 European ancestry cases, 5,256 European ancestry controls	NA	6p22.1		rs1029239-G	NR	3E-6		1.2904		Illumina [7574753] (imputed)	N
595	chr6_qbl_hap6	1431591	1431592	rs1029238	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	6p22.1	TRIM15	rs1029238-A	0.089377	4E-11		0.025450304	[0.018-0.033] unit increase	Affymetrix [93095623] (imputed)	N
595	chr6_qbl_hap6	1432645	1432646	rs929156	33909500	Moll M	2021-04-28	Am J Physiol Lung Cell Mol Physiol	A Systematic Analysis of Protein-altering Exonic Variants in Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease	up to 31,465 European ancestry cases, up to 203,688 European ancestry controls, up to 1,413 African ancestry cases, up to 6,080 African ancestry controls, up to 287 East Asian ancestry cases, up to 7,484 East Asian ancestry controls, up to 61 Hispanic cases, up to 613 Hispanic controls	NA	6p22.1	TRIM15	rs929156-G	0.76	8E-8		1.06	[1.04 -1.09]	Illumina [at least 109036]	N
596	chr6_qbl_hap6	1446277	1446278	rs2106072	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p22.1	NR	rs2106072-A	0.13	3E-10		1.11	[1.08-1.15]	Affymetrix [9886854] (imputed)	N
596	chr6_qbl_hap6	1446277	1446278	rs2106072	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p22.1	NR	rs2106072-A	0.13	9E-13			[NR]	Affymetrix [9886854] (imputed)	N
596	chr6_qbl_hap6	1446277	1446278	rs2106072	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in non-current smokers	16,488 European ancestry cases, 169,688 European ancestry controls	NA	6p22.1	NR	rs2106072-A	0.13	3E-10		1.12	[1.08-1.15]	Affymetrix [9886854] (imputed)	N
596	chr6_qbl_hap6	1448063	1448064	rs2517622	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Proheparin-binding EGF-like growth factor levels	21,758 European ancestry individuals	9,173 individuals	6p22.1		rs2517622-C	0.11	1E-9		0.0845	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
596	chr6_qbl_hap6	1448063	1448064	rs2517622	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Help-seeking from a psychiatrist	36,286 British ancestry cases, 297,126 British ancestry controls	NA	6p22.1	NR	rs2517622-G	0.863	4E-11		1.0799136	NR	NR [5276842] (imputed)	N
596	chr6_qbl_hap6	1448063	1448064	rs2517622	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Help-seeking from a GP (without major depressive disorder symptoms)	8,632 British ancestry cases, 49,493 British ancestry controls	NA	6p22.1	NR	rs2517622-?	NR	3E-6		1.1223345	[1.07-1.18]	NR [5276842] (imputed)	N
596	chr6_qbl_hap6	1458199	1458200	rs2523722	22883433	Irish Schizophrenia Genomics Consortium and the Wellcome Trust Case Control Consortium 2	2012-08-07	Biol Psychiatry	Genome-wide association study implicates HLA-C*01:02 as a risk factor at the major histocompatibility complex locus in schizophrenia.	Schizophrenia	1,606 European ancestry cases, 1,794 European ancestry controls	13,195 European ancestry cases, 31,021 European ancestry controls	6p22.1	MHC, TRIM26	rs2523722-G	0.737	1E-16		1.25	[1.12-1.39]	Affymetrix [6212339]	N
596	chr6_qbl_hap6	1459812	1459813	rs2523720	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p22.1		rs2523720-C	0.836	9E-50				Affymetrix [10369434] (imputed)	N
596	chr6_qbl_hap6	1460761	1460762	rs2428503	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	TRIM26	rs2428503-T	NR	2E-9		0.0221273	[0.015-0.029] unit decrease	Affymetrix [127266] (imputed)	N
596	chr6_qbl_hap6	1461245	1461246	rs2523719	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	6p22.1	TRIM26	rs2523719-G	0.830078	2E-21		0.0245541	[0.019-0.03] unit increase	Affymetrix [NR] (imputed)	N
596	chr6_qbl_hap6	1462253	1462254	rs2517611	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (anti-inflammatory and antirheumatic products, non-steroids)	74,150 European ancestry cases, 90,370 European ancestry controls, 29,694 East Asian ancestry cases, 149,032 East Asian ancestry controls	NA	6p22.1		rs2517611-G	NR	2E-9		0.0422	[0.028-0.056] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
596	chr6_qbl_hap6	1462253	1462254	rs2517611	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Asthma	38,369 European ancestry cases, 411,131 European ancestry controls, 13,015 East Asian ancestry cases, 162,933 East Asian ancestry controls	NA	6p22.1		rs2517611-G	NR	3E-11		0.0613	[0.043-0.079] unit increase	Affymetrix, Illumina [25837673] (imputed)	N
596	chr6_qbl_hap6	1462253	1462254	rs2517611	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (anti-inflammatory and antirheumatic products, non-steroids)	74,150 European ancestry cases, 90,370 European ancestry controls	NA	6p22.1	TRIM26	rs2517611-G	0.229963	7E-10		0.050484303	[0.034-0.067] unit decrease	Affymetrix [7288503] (imputed)	N
596	chr6_qbl_hap6	1463436	1463437	rs1117490	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (childhood onset)	9,433 British ancestry cases, 318,237 British ancestry controls	NA	6p22.1	TRIM26, TRIM15, TRIM39	rs1117490-C	0.234	3E-8		1.1	[1.063-1.137]	Affymetrix [10894596] (imputed)	N
596	chr6_qbl_hap6	1463436	1463437	rs1117490	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (adult onset)	21,564 British ancestry cases, 318,237 British ancestry controls	NA	6p22.1	TRIM26, TRIM15, TRIM39	rs1117490-C	0.234	7E-7		1.059	[1.036-1.084]	Affymetrix [10894596] (imputed)	N
596	chr6_qbl_hap6	1472342	1472343	rs2844775	24489884	Mick E	2014-01-01	PLoS One	Genome-wide association study of proneness to anger.	Anger	8,747 European ancestry individuals	NA	6p22.1	TRIM31, TRIM10, PPP1R11, TRIM40, TRIM15, HLA-A29.1, TRIM26, HCG9, ZNRD1, RNF39	rs2844775-A	0.25	8E-7	(Temperament)	0.15	[NR] unit decrease	Affymetrix [677643]	N
596	chr6_qbl_hap6	1474803	1474804	rs2188100	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p22.1	NR	rs2188100-A	0.16	5E-11		1.15	[1.1-1.2]	Affymetrix [9886854] (imputed)	N
596	chr6_qbl_hap6	1474803	1474804	rs2188100	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p22.1	NR	rs2188100-A	0.16	5E-14			[NR]	Affymetrix [9886854] (imputed)	N
596	chr6_qbl_hap6	1474803	1474804	rs2188100	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in never smokers	8,631 European ancestry cases, 120,544 European ancestry controls	NA	6p22.1	NR	rs2188100-A	0.16	2E-11		1.15	[1.11-1.2]	Affymetrix [9886854] (imputed)	N
596	chr6_qbl_hap6	1475315	1475316	rs1345229	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	6p22.1	TRIM26	rs1345229-A	0.085649	1E-9		0.023856346	[0.016-0.032] unit increase	Affymetrix [93095623] (imputed)	N
596	chr6_qbl_hap6	1479601	1479602	rs9380159	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p22.1	NR	rs9380159-?	NR	8E-13		0.1064	[0.077-0.136] unit decrease	Illumina [at least 560000] (imputed)	N
596	chr6_qbl_hap6	1482957	1482958	rs2517602	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	TRIM26	rs2517602-T	NR	1E-9		6.068	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
596	chr6_qbl_hap6	1484048	1484048	rs72031595	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	6p22.1		rs72031595-CT	0.551943	5E-9		0.014966801	[0.01-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
596	chr6_qbl_hap6	1493353	1493354	rs5875247	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	6p22.1	HCG17	rs5875247-C	0.465286	6E-14		0.017951211	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
596	chr6_qbl_hap6	1493787	1493788	rs3094137	29784950	Sawai H	2018-05-21	Sci Rep	Genome-wide association study identified new susceptible genetic variants in HLA class I region for hepatitis B virus-related hepatocellular carcinoma.	Hepatocellular carcinoma in hepatitis B infection	473 Japanese ancestry chronic hepatitis and hepatocellular carcinoma cases, 516 Japanese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma	153 Japanese ancestry chronic hepatitis and hepatocellular carcinoma cases, 614 Japanese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma, 94 Chinese ancestry chronic hepatitis and hepatocellular carcinoma cases, 187 Chinese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma, 185 Thai ancestry chronic hepatitis and hepatocellular carcinoma cases, 198 Thai ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma	6p22.1	HLA	rs3094137-?	NR	4E-7	(Japanese)	1.76	[1.41-2.19]	Affymetrix [447830]	N
596	chr6_qbl_hap6	1495485	1495486	rs885916	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	HCG17	rs885916-T	NR	1E-11		6.793	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
596	chr6_qbl_hap6	1500843	1500844	rs3129693	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p22.1	HCG17, TRIM26BP	rs3129693-T	NR	2E-9		0.0239683	[0.016-0.032] unit increase	Affymetrix [323123] (imputed)	N
596	chr6_qbl_hap6	1508289	1508290	rs9391803	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	6p22.1	TRIM26	rs9391803-T	0.852467	2E-19		0.0266262	[0.021-0.032] unit decrease	Affymetrix [NR] (imputed)	N
596	chr6_qbl_hap6	1510263	1510264	rs9261608	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6p22.1		rs9261608-T	0.858197	3E-8		0.0330532	[0.021-0.045] unit increase	NR [11722792] (imputed)	N
596	chr6_qbl_hap6	1516340	1516341	rs2189373	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	HCG17	rs2189373-T	NR	8E-10		0.0232455	[0.016-0.031] unit decrease	Affymetrix [323858] (imputed)	N
596	chr6_qbl_hap6	1516340	1516341	rs2189373	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	HCG17	rs2189373-T	NR	5E-9		5.835	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
596	chr6_qbl_hap6	1516425	1516426	rs2187980	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	6p22.1		rs2187980-A	0.855994	2E-8		0.0328244	[0.021-0.044] unit increase	NR [11722792] (imputed)	N
596	chr6_qbl_hap6	1517883	1517884	rs3094078	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	6p22.1	HCG17	rs3094078-?	NR	2E-15		0.0305	[0.024-0.037] unit decrease	Affymetrix [5701386] (imputed)	N
596	chr6_qbl_hap6	1517883	1517884	rs3094078	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA	6p22.1	NR	rs3094078-?	NR	8E-6		0.0526	[0.029-0.076] unit increase	Illumina [at least 560000] (imputed)	N
596	chr6_qbl_hap6	1520056	1520057	rs185780876	32185793	Yan J	2020-03-17	Clin Genet	A genome-wide association study identifies FSHR rs2300441 associated with follicle-stimulating hormone levels.	Luteinizing hormone levels in healthy women	720 Han Chinese ancestry individuals	NA	6p22.1	NR	rs185780876-?	NR	4E-7				Affymetrix [3101376] (imputed)	N
596	chr6_qbl_hap6	1522219	1522220	rs2428507	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	HLA-L, HCG17	rs2428507-A	NR	4E-9		5.893	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
596	chr6_qbl_hap6	1522835	1522836	rs2516703	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p22.1	HCG17	rs2516703-G	NR	1E-6		0.0184109	[0.011-0.026] unit decrease	Illumina [13520550] (imputed)	N
596	chr6_qbl_hap6	1522835	1522836	rs2516703	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	6p22.1	HCG17	rs2516703-G	NR	1E-10		0.0283809	[0.02-0.037] unit decrease	Illumina [13520550] (imputed)	N
596	chr6_qbl_hap6	1523435	1523435	rs201471471	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	6p22.1	NR	rs201471471-?	NR	3E-7		0.0808	[0.05-0.112] unit increase	Illumina [at least 560000] (imputed)	N
596	chr6_qbl_hap6	1525427	1525428	rs2516697	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	HCG17, HLA-L	rs2516697-A	NR	1E-8		0.0194794	[0.013-0.026] unit decrease	Affymetrix [321016] (imputed)	N
596	chr6_qbl_hap6	1534449	1534450	rs28894080	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p22.1	NR	rs28894080-?	NR	1E-8		0.1082	[0.071-0.145] unit increase	Illumina [at least 560000] (imputed)	N
596	chr6_qbl_hap6	1540605	1540608	rs141219707	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	6p22.1	HCG17, HLA-L	rs141219707-G	0.064428	9E-12		0.0670612	[0.059-0.075] unit increase	Affymetrix [93095623] (imputed)	N
596	chr6_qbl_hap6	1540606	1540608	rs368679067	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hashimoto thyroiditis	537 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	6p22.1		rs368679067-G	0.221880434	3E-13		0.64336747	[0.47-0.82] unit increase	Illumina [13428945] (imputed)	N
596	chr6_qbl_hap6	1549847	1549848	rs1264622	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	HCG17, HLA-L, HCG18	rs1264622-T	NR	2E-12		0.0273215	[0.02-0.035] unit decrease	Affymetrix [323858] (imputed)	N
596	chr6_qbl_hap6	1549847	1549848	rs1264622	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	HCG17, HLA-L, HCG18	rs1264622-T	NR	2E-11		0.0260716	[0.018-0.034] unit decrease	Affymetrix [127266] (imputed)	N
596	chr6_qbl_hap6	1549847	1549848	rs1264622	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6p22.1	HCG18	rs1264622-T	0.200945	1E-26		0.045548007	[0.037-0.054] unit decrease	Affymetrix [93095623] (imputed)	N
596	chr6_qbl_hap6	1549847	1549848	rs1264622	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p22.1	HLA-L, HCG17, HCG18	rs1264622-T	0.1901	2E-7		0.0455	[0.028-0.063] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
596	chr6_qbl_hap6	1549847	1549848	rs1264622	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	6p22.1	HCG18	rs1264622-T	0.2019	4E-13		0.03202955	[0.023-0.041] unit decrease	Affymetrix [~ 2500000] (imputed)	N
596	chr6_qbl_hap6	1566657	1566657	rs11380688	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p22.1	HCG17, HCG18	rs11380688-CT	0.2755	1E-9		0.0469	[0.032-0.062] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
596	chr6_qbl_hap6	1569274	1569275	rs139419536	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	6p22.1	HCG18	rs139419536-G	0.5266	1E-22		0.0193	[0.015-0.023] unit decrease	Affymetrix [18391927] (imputed)	N
596	chr6_qbl_hap6	1569571	1569572	rs577217250	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	6p22.1	HCG18, HCG17	rs577217250-C	0.6248	8E-56		0.06073397	[0.053-0.068] unit decrease	Affymetrix [~ 2500000] (imputed)	N
596	chr6_qbl_hap6	1569571	1569572	rs577217250	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	6p22.1	HCG18, HCG17	rs577217250-C	0.6248	5E-58		0.0619973	[0.054-0.07] unit decrease	Affymetrix [~ 2500000] (imputed)	N
596	chr6_qbl_hap6	1571964	1571965	rs1264587	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p22.1	HCG17, HCG18	rs1264587-G	NR	7E-10		0.0215064	[0.015-0.028] unit decrease	Affymetrix [319769] (imputed)	N
596	chr6_qbl_hap6	1571964	1571965	rs1264587	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p22.1	HCG17, HCG18	rs1264587-G	NR	5E-9		0.0203583	[0.014-0.027] unit decrease	Affymetrix [319769] (imputed)	N
596	chr6_qbl_hap6	1571964	1571965	rs1264587	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p22.1	HCG17, HCG18	rs1264587-G	NR	4E-8		0.0194219	[0.013-0.026] unit decrease	Affymetrix [321169] (imputed)	N
597	chr6_qbl_hap6	1573977	1573978	rs6926097	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mumps	31,227 European ancestry cases, 54,153 European ancestry controls	NA	6p22.1	NR	rs6926097-?	NR	2E-13		0.5671	[0.41-0.72] unit decrease	Illumina [at least 560000] (imputed)	N
597	chr6_qbl_hap6	1578011	1578012	rs9357097	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8 on CD39+ CD8+ T cell	2,915 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p22.1		rs9357097-T	0.47616	8E-12		0.1925	[0.14-0.25] unit increase	Illumina [17951463] (imputed)	N
597	chr6_qbl_hap6	1578540	1578541	rs1264585	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p22.1	NR	rs1264585-A	0.233	1E-13	(conditional)	1.206	[1.16-1.25]	Illumina [11270530] (imputed)	N
597	chr6_qbl_hap6	1581175	1581176	rs9261655	33563987	Tyrrell J	2021-02-09	Nat Commun	Genetic predictors of participation in optional components of UK Biobank.	Percentage of invited food questionnaires completed	300,639 European ancestry individuals	NA	6p22.1	NR	rs9261655-G	0.89	4E-9		0.86	[0.57-1.15] unit increase	Affymetrix [39302896] (imputed)	N
597	chr6_qbl_hap6	1583554	1583555	rs1264584	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	334,944 European ancestry, NR ancestry individuals	NA	6p22.1		rs1264584-?	NR	5E-8				Affymetrix [NR] (imputed)	N
597	chr6_qbl_hap6	1588964	1588965	rs1110464	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	6p22.1	TRIM39-RPP21	rs1110464-T	0.5706	3E-9		0.015407745	[0.01-0.021] unit decrease	Affymetrix [~ 11515000] (imputed)	N
597	chr6_qbl_hap6	1592142	1592143	rs3094067	25827949	Kunz M	2015-05-04	Exp Dermatol	Genome-wide association study identifies new susceptibility loci for cutaneous lupus erythematosus.	Cutaneous lupus erythematosus	151 European ancestry cases, 1,288 European ancestry controls	219 European ancestry cases, 262 European ancestry controls	6p22.1	TRIM39, RPP21	rs3094067-G	0.096	2E-11		2.32	[1.68-3.20]	Affymetrix [906600]	N
597	chr6_qbl_hap6	1595500	1595501	rs3778624	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	6p22.1	NR	rs3778624-?		7E-7	(MICA)			Illumina [NR]	N
597	chr6_qbl_hap6	1598853	1598854	rs9261659	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p22.1	NR	rs9261659-G	0.12	1E-10	(IFNAR2_of_CD20p)			Illumina [5084123] (imputed)	N
597	chr6_qbl_hap6	1598853	1598854	rs9261659	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p22.1	NR	rs9261659-?	NR	3E-13		0.1554	[0.11-0.2] unit decrease	Illumina [at least 560000] (imputed)	N
597	chr6_qbl_hap6	1605929	1605930	rs45626136	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p22.1	RPP21	rs45626136-C	0.939	1E-6		0.111	[0.066-0.156] unit increase	Affymetrix, Illumina [7374092] (imputed)	N
597	chr6_qbl_hap6	1606240	1606241	rs6986	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Anxiety	at least 23,606 European ancestry cases, at least 113,351 European ancestry controls	624,615 European ancestry cases, 1,310,854 European ancestry controls	6p22.1	TRIM39, RPP21	rs6986-G	0.2545	1E-12		0.018671134	[0.013-0.025] unit decrease	NR [9417325] (imputed)	N
597	chr6_qbl_hap6	1606240	1606241	rs6986	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	6p22.1	RPP21	rs6986-C	0.223335	7E-10		6.16	z score increase	NR [10847151] (imputed)	N
597	chr6_qbl_hap6	1606240	1606241	rs6986	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling guilty	373,380 European ancestry individuals	NA	6p22.1	TRIM39-RPP21	rs6986-C	0.223335	4E-13		7.25	z score increase	NR [10847151] (imputed)	N
597	chr6_qbl_hap6	1606240	1606241	rs6986	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	6p22.1	GNL1, HLA-E, PRR3, RPP21, TRIM10, TRIM15, TRIM26, TRIM31, TRIM39, TRIM39-RPP21, TRIM40	rs6986-C	0.22334	8E-9		5.76	z score increase	Illumina [18485882] (imputed)	N
597	chr6_qbl_hap6	1606240	1606241	rs6986	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	6p22.1	NR	rs6986-C	0.2277	5E-6	(Trans-16:1n-7, EA)	0.0079	[0.0046-0.0112] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
597	chr6_qbl_hap6	1613957	1613958	rs3132649	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	6p22.1	TRIM39-RPP21, HLA-E	rs3132649-G	NR	4E-7		0.152484	[0.093-0.211] unit increase	Illumina [at least 950000] (imputed)	N
597	chr6_qbl_hap6	1616876	1616876	rs9280949	31577861	Dai J	2019-10-31	Int J Cancer	Genome-wide association study of INDELs identified four novel susceptibility loci associated with lung cancer risk.	Lung cancer	20,871 European ancestry cases, 15,971 European ancestry controls, 2,331 Chinese ancestry cases, 3,077 Chinese ancestry controls	NA	6p22.1	RPP21	rs9280949-T	0.09	3E-10		1.16	[1.11-1.22]	Illumina [484196]	N
597	chr6_qbl_hap6	1618430	1618431	rs3130379	31272903	Sunadome H	2019-07-01	Allergol Int	Correlation between eosinophil count, its genetic background and body mass index: The Nagahama Study.	Eosinophil counts	4,650 East Asian ancestry individuals	NA	6p22.1	NR	rs3130379-T	0.11	2E-7		0.1677	NR unit increase	Illumina [103680] (imputed)	N
597	chr6_qbl_hap6	1618430	1618431	rs3130379	31272903	Sunadome H	2019-07-01	Allergol Int	Correlation between eosinophil count, its genetic background and body mass index: The Nagahama Study.	Eosinophil counts	4,206 East Asian ancestry individuals	NA	6p22.1	NR	rs3130379-T	0.11	4E-10		0.2134	NR unit increase	Illumina [103680] (imputed)	N
597	chr6_qbl_hap6	1619428	1619428	rs202005918	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	95,717 East Asian ancestry individuals	NA	6p22.1		rs202005918-CA	0.233019	1E-8		0.0295853	[0.019-0.04] unit increase	Illumina [13471431] (imputed)	N
597	chr6_qbl_hap6	1620852	1620853	rs3094622	29899525	Klimentidis YC	2018-06-13	Int J Obes (Lond)	Genome-wide association study of habitual physical activity in over 377,000 UK Biobank participants identifies multiple variants including CADM2 and APOE.	Moderate to vigorous physical activity levels	377,234 European ancestry individuals	NA	6p22.1	RPP21	rs3094622-A	0.86	1E-9		0.02	unit increase	Affymetrix [11800000] (imputed)	N
597	chr6_qbl_hap6	1622091	1622092	rs116470386	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p22.1	NR	rs116470386-?	NR	5E-7		0.2768	[0.17-0.39] unit decrease	Illumina [at least 560000] (imputed)	N
597	chr6_qbl_hap6	1626404	1626405	rs3094054	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p22.1	NR	rs3094054-T	0.1132	1E-7	(EA)	0.056	[0.035-0.077] unit decrease	Illumina [~ 11800000] (imputed)	N
597	chr6_qbl_hap6	1628248	1628249	rs2057726	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	6p22.1		rs2057726-C	0.143	2E-91		0.31	[0.28-0.34] % increase	Affymetrix [NR] (imputed)	N
597	chr6_qbl_hap6	1632835	1632835	rs139568388	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	UBQLN1P1	rs139568388-CT	NR	2E-8		0.0220953	[0.014-0.03] unit decrease	Affymetrix [323858] (imputed)	N
597	chr6_qbl_hap6	1632835	1632835	rs139568388	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	UBQLN1P1	rs139568388-CT	NR	3E-8		0.0218212	[0.014-0.03] unit decrease	Affymetrix [127266] (imputed)	N
597	chr6_qbl_hap6	1635648	1635649	rs3129817	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p22.1	UBQLN1P1	rs3129817-A	NR	1E-9		0.0241213	[0.016-0.032] unit decrease	Affymetrix [319769] (imputed)	N
597	chr6_qbl_hap6	1635648	1635649	rs3129817	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p22.1	UBQLN1P1	rs3129817-A	NR	1E-8		0.0225242	[0.015-0.03] unit decrease	Affymetrix [319769] (imputed)	N
597	chr6_qbl_hap6	1635648	1635649	rs3129817	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p22.1	UBQLN1P1	rs3129817-A	NR	5E-8		0.0218736	[0.014-0.03] unit decrease	Affymetrix [321169] (imputed)	N
597	chr6_qbl_hap6	1635648	1635649	rs3129817	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Anxiety	at least 23,606 European ancestry cases, at least 113,351 European ancestry controls	624,615 European ancestry cases, 1,310,854 European ancestry controls	6p22.1	UBQLN1P1	rs3129817-G	0.1083	2E-48		0.052231386	[0.044-0.06] unit increase	NR [9417325] (imputed)	N
597	chr6_qbl_hap6	1635648	1635649	rs3129817	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	UBQLN1P1	rs3129817-A	NR	1E-8		5.695	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
597	chr6_qbl_hap6	1640213	1640214	rs970270	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Prostate cancer	10,792 European ancestry cases, 410,350 European ancestry controls	NA	6p22.1		rs970270-A	NR	3E-7		1.0985389	NR	Affymetrix [7846216] (imputed)	N
597	chr6_qbl_hap6	1640627	1640628	rs3132625	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Peripheral artery disease	7,114 European ancestry cases, 475,964 European ancestry controls, 4,112 East Asian ancestry cases, 173,601 East Asian ancestry controls	NA	6p22.1		rs3132625-G	NR	2E-8		0.165	[0.11-0.22] unit increase	Affymetrix, Illumina [25844651] (imputed)	N
597	chr6_qbl_hap6	1652600	1652601	rs2524204	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	6p22.1	intergenic	rs2524204-C	0.1322	6E-15		0.04113655	[0.031-0.051] unit decrease	Affymetrix [~ 2500000] (imputed)	N
597	chr6_qbl_hap6	1652600	1652601	rs2524204	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	6p22.1	intergenic	rs2524204-C	0.1322	7E-14		0.03948169	[0.029-0.05] unit decrease	Affymetrix [~ 2500000] (imputed)	N
597	chr6_qbl_hap6	1654261	1654262	rs9391683	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p22.1		rs9391683-G	0.689	2E-33				Affymetrix [10369434] (imputed)	N
597	chr6_qbl_hap6	1654326	1654327	rs2516686	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	6p22.1	intergenic	rs2516686-G	0.1322	1E-13		0.03934043	[0.029-0.05] unit decrease	Affymetrix [~ 2500000] (imputed)	N
597	chr6_qbl_hap6	1654326	1654327	rs2516686	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	6p22.1	intergenic	rs2516686-G	0.1322	6E-12		0.03638258	[0.026-0.047] unit decrease	Affymetrix [~ 2500000] (imputed)	N
597	chr6_qbl_hap6	1654710	1654711	rs9391684	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p22.1		rs9391684-G	0.688	7E-19				Affymetrix [10369434] (imputed)	N
597	chr6_qbl_hap6	1658351	1658352	rs3130116	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p22.1	NR	rs3130116-C	0.1391	6E-13		0.0124	[0.0091-0.0157] unit decrease	NR [7666894] (imputed)	N
597	chr6_qbl_hap6	1659914	1659915	rs1264565	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	6p22.1		rs1264565-T	0.618	8E-15		0.01	[0.008-0.012] unit increase	NR [NR] (imputed)	N
597	chr6_qbl_hap6	1666789	1666790	rs28780100	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p22.1	NR	rs28780100-?	NR	3E-9		0.1143	[0.077-0.152] unit increase	Illumina [at least 560000] (imputed)	N
597	chr6_qbl_hap6	1668788	1668789	rs34874107	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	6p22.1		rs34874107-C	0.182865	4E-10		0.019685585	[0.014-0.026] unit increase	Affymetrix [93095623] (imputed)	N
597	chr6_qbl_hap6	1673269	1673270	rs78860372	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lung cancer	4,444 East Asian ancestry cases, 174,282 East Asian ancestry controls	NA	6p22.1		rs78860372-T	0.236112602	5E-9		0.14972878	[0.099-0.2] unit increase	Illumina [13429980] (imputed)	N
597	chr6_qbl_hap6	1675071	1675072	rs1264544	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	334,944 European ancestry, NR ancestry individuals	NA	6p22.1		rs1264544-?	NR	5E-8				Affymetrix [NR] (imputed)	N
597	chr6_qbl_hap6	1675071	1675072	rs1264544	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	6p22.1		rs1264544-C	0.667	1E-12				Affymetrix [10369434] (imputed)	N
597	chr6_qbl_hap6	1678650	1678651	rs3094717	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p22.1	NR	rs3094717-?	NR	6E-7		0.0733	[0.044-0.102] unit decrease	Illumina [at least 560000] (imputed)	N
597	chr6_qbl_hap6	1680146	1680147	rs139215104	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mumps	31,227 European ancestry cases, 54,153 European ancestry controls	NA	6p22.1	NR	rs139215104-?	NR	6E-11		0.5908	[0.41-0.77] unit increase	Illumina [at least 560000] (imputed)	N
597	chr6_qbl_hap6	1683085	1683086	rs9261899	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	6p22.1	NR	rs9261899-?	NR	9E-33		11.926	NR z score increase	Illumina [at least 830937] (imputed)	N
597	chr6_qbl_hap6	1684496	1684497	rs76241157	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lung cancer	3,791 European ancestry cases, 489,012 European ancestry controls, 4,444 East Asian ancestry cases, 174,282 East Asian ancestry controls	NA	6p22.1		rs76241157-T	NR	1E-8		0.1454	[0.095-0.196] unit increase	Affymetrix, Illumina [25845450] (imputed)	N
597	chr6_qbl_hap6	1684880	1684881	rs3130127	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	MICC	rs3130127-A	NR	8E-10		6.154	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
597	chr6_qbl_hap6	1691291	1691292	rs114810763	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6p22.1		rs114810763-A	0.1549	2E-9		0.0121	[0.0082-0.016] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
597	chr6_qbl_hap6	1691291	1691292	rs114810763	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6p22.1	Intergenic	rs114810763-A	0.1549	6E-12	(MTAG)	0.0129	[0.0092-0.0166] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
597	chr6_qbl_hap6	1693664	1693665	rs149543464	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms (MTAG)	354,862 European ancestry individuals	NA	6p22.1	NR	rs149543464-G	0.8838	1E-10		0.0217	[0.015-0.028] unit increase	Illumina [NR] (imputed)	N
597	chr6_qbl_hap6	1693664	1693665	rs149543464	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms	354,862 European ancestry individuals	NA	6p22.1	NR	rs149543464-G	0.8838	8E-9		0.0213	[0.014-0.029] unit increase	Illumina [NR] (imputed)	N
597	chr6_qbl_hap6	1701701	1701702	rs1269556	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	6p22.1	NR	rs1269556-?	NR	2E-6		0.0083093	[0.0049-0.0117] unit decrease	Affymetrix [805426] (imputed)	N
597	chr6_qbl_hap6	1702163	1702164	rs3132645	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p22.1	RNF39, TRIM31, FLOT1, PPP1R18, HLA-J, ZNRD1-AS1_3, ZNRD1, TRIM26, HCG17, TRIM26BP, HLA-L, TRIM39-RPP21, RPP21, HCG19P, ATAT1, NRM, IER3, HCG20, LINC00243, ZNRD1-AS1, HCG4P3, PPP1R11, TRIM31-AS1, TRIM40, TRIM10, TRIM15, PAIP1P1, XXbac-BPG283O16.9, HCG18, TRIM39, HLA-N, UBQLN1P1, MICC, SUCLA2P1, GNL1, ABCF1, PPP1R10, PTMAP1, MRPS18B, C6orf136, AL662800.2, DHX16, AL662797.1, XXbac-BPG252P9.9, TUBB, MDC1, Y_RNA, XXbac-BPG252P9.10, RN7SL353P	rs3132645-C	0.09428285	4E-22	(EA, MHC class I polypeptide-related sequence B)	0.7147	[0.57-0.86] unit decrease	Affymetrix [509946]	N
598	chr6_qbl_hap6	1704819	1704820	rs1264516	33106546	Johnson TA	2020-10-26	J Hum Genet	Association of an IGHV3-66 gene variant with Kawasaki disease.	Kawasaki disease	1,276 East Asian ancestry cases, 5,086 East Asian ancestry controls	2,152 East Asian ancestry cases, 2,751 East Asian ancestry controls	6p22.1	LOC105375012	rs1264516-A	NR	4E-11		1.24	[1.16-1.32]	Affymetrix, Illumina [6265045] (imputed)	N
598	chr6_qbl_hap6	1725177	1725178	rs3130141	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p22.1	RPP21, HLA-E	rs3130141-A	0.283	4E-23				Illumina [118177]	N
598	chr6_qbl_hap6	1734121	1734122	rs2516667	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p22.1	NR	rs2516667-?	NR	5E-10		0.0889	[0.061-0.117] unit decrease	Illumina [at least 560000] (imputed)	N
598	chr6_qbl_hap6	1734220	1734221	rs3132615	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p22.1	NR	rs3132615-T	0.1154	2E-6	(EA)	0.0507	[0.03-0.071] unit decrease	Illumina [~ 11800000] (imputed)	N
598	chr6_qbl_hap6	1745880	1745881	rs9380180	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p22.1	RANP1	rs9380180-A	NR	6E-9		0.0171541	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
598	chr6_qbl_hap6	1745880	1745881	rs9380180	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p22.1	RANP1	rs9380180-A	NR	1E-8		0.0168134	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
598	chr6_qbl_hap6	1748209	1748210	rs12207974	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (age of onset)	37,846 British ancestry individuals	NA	6p22.1	NR	rs12207974-C	0.776	9E-11		1.066	[0.74-1.39] unit decrease	Affymetrix [10894596] (imputed)	N
598	chr6_qbl_hap6	1748236	1748237	rs17875360	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	6p22.1	NR	rs17875360-?	NR	1E-6		0.0925	[0.055-0.13] unit increase	Illumina [at least 560000] (imputed)	N
598	chr6_qbl_hap6	1748835	1748836	rs1264459	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	6p22.1	HLA-E	rs1264459-A	0.826302	3E-10		0.019164842	[0.013-0.025] unit increase	Affymetrix [93095623] (imputed)	N
598	chr6_qbl_hap6	1750978	1750979	rs1264457	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	6p22.1	HLA-E	rs1264457-A	0.60324	8E-24		0.02398372	[0.019-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
598	chr6_qbl_hap6	1750978	1750979	rs1264457	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p22.1	HLA-E	rs1264457-G		4E-11		0.015	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
598	chr6_qbl_hap6	1761709	1761710	rs3131115	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder	29,475 European ancestry cases, 63,482 European ancestry controls	NA	6p21.33	NR	rs3131115-C	0.671942	1E-7		1.0845987	[1.05-1.12]	Affymetrix [7791636] (imputed)	N
598	chr6_qbl_hap6	1761709	1761710	rs3131115	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	6p21.33	HLA-E, GNL1	rs3131115-T	NR	2E-6		0.0966506	[0.057-0.136] unit decrease	Illumina [at least 950000] (imputed)	N
598	chr6_qbl_hap6	1764435	1764436	rs2429657	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.33		rs2429657-G	0.21809299999999998	2E-8		1.0286343	[1.02-1.04]	Affymetrix, Illumina [9851866] (imputed)	N
598	chr6_qbl_hap6	1772824	1772825	rs140668832	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs140668832-?		2E-9		1.07	[1.05-1.09]	Illumina [7645193] (imputed)	N
598	chr6_qbl_hap6	1772824	1772825	rs140668832	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs140668832-?		3E-10		1.92	[1.57-2.35]	Illumina [7645193] (imputed)	N
598	chr6_qbl_hap6	1775383	1775384	rs28894081	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p21.33	NR	rs28894081-A	0.0655	1E-7		0.0126	[0.0079-0.0173] unit increase	NR [7666894] (imputed)	N
598	chr6_qbl_hap6	1776941	1776942	rs10484552	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p21.33	NR	rs10484552-?	NR	8E-10		0.0986	[0.067-0.13] unit decrease	Illumina [at least 560000] (imputed)	N
598	chr6_qbl_hap6	1780212	1780213	rs143654430	30111768	Yao C	2018-08-15	Nat Commun	Genome-wide mapping of plasma protein QTLs identifies putatively causal genes and pathways for cardiovascular disease.	Blood protein levels	6861 European ancestry individuals	4298 European ancestry individuals	6p21.33		rs143654430-T	0.981	7E-18	(C2)	0.639	unit increase	Affymetrix, Illumina [8509364] (imputed)	N
598	chr6_qbl_hap6	1785941	1785942	rs139629463	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mumps	31,227 European ancestry cases, 54,153 European ancestry controls	NA	6p21.33	NR	rs139629463-?	NR	4E-6		0.3	[0.17-0.43] unit increase	Illumina [at least 560000] (imputed)	N
598	chr6_qbl_hap6	1787369	1787370	rs149608588	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p21.33	NR	rs149608588-?	NR	1E-6		0.2523	[0.15-0.36] unit decrease	Illumina [at least 560000] (imputed)	N
598	chr6_qbl_hap6	1788585	1788586	rs41265607	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.33		rs41265607-C	0.801	3E-28				Affymetrix [10369434] (imputed)	N
598	chr6_qbl_hap6	1788585	1788586	rs41265607	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs41265607-C	0.801	4E-34				Affymetrix [10369434] (imputed)	N
598	chr6_qbl_hap6	1788642	1788643	rs147537141	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	6p21.33		rs147537141-G	0.014219	2E-16		0.08431184	[0.064-0.104] unit increase	Affymetrix [93095623] (imputed)	N
598	chr6_qbl_hap6	1801858	1801859	rs3130117	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p21.33	NR	rs3130117-?	NR	2E-7		0.0742	[0.046-0.102] unit increase	Illumina [at least 560000] (imputed)	N
598	chr6_qbl_hap6	1804072	1804073	rs2524222	27479909	Hyde CL	2016-08-01	Nat Genet	Identification of 15 genetic loci associated with risk of major depression in individuals of European descent.	Major depressive disorder	84,847 European ancestry cases, 241,266 European ancestry controls	45,773 European ancestry cases, 106,354 European ancestry controls	6p21.33	GNL1	rs2524222-T	0.219809	1E-6		0.0335	[0.02-0.047] unit increase	Illumina [1220000] (imputed)	N
598	chr6_qbl_hap6	1821557	1821558	rs3130040	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	6p21.33	PRR3	rs3130040-T	NR	2E-8		0.0366187	[0.024-0.049] unit increase	Illumina [13520550] (imputed)	N
598	chr6_qbl_hap6	1830511	1830512	rs3132613	21900946	Nakabayashi K	2011-09-08	J Hum Genet	Identification of independent risk loci for Graves' disease within the MHC in the Japanese population.	Graves' disease	1,119 Japanese ancestry cases, 2,718 Japanese ancestry controls	432 Japanese ancestry cases, 1,157 Japanese ancestry controls	6p21.33	MHC	rs3132613-C	0.25	1E-13		1.43	[1.30-1.57]	Perlegen [268068]	N
598	chr6_qbl_hap6	1832110	1832111	rs4148247	26379185	Garcia-Etxebarria K	2015-09-17	PLoS One	No Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity.	Mild influenza (H1N1) infection	107 European ancestry mild cases, 549 European ancestry population controls	NA	6p21.33	GCN20, ABCF1	rs4148247-?	0.0167	1E-8		5.963	[5.27-6.66]	Affymetrix [547296]	N
598	chr6_qbl_hap6	1832857	1832858	rs2269710	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	IgM levels	14,442 Icelandic ancestry individuals	2,157 Swedish ancestry individuals	6p21.33	ABCF1	rs2269710-C	0.3579	3E-20		0.11	NR SD units increase	Illumina [21568490] (imputed)	N
599	chr6_qbl_hap6	1837308	1837309	rs3132610	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p21.33	NR	rs3132610-G	0.1198	1E-6	(EA)	0.0499	[0.03-0.07] unit decrease	Illumina [~ 11800000] (imputed)	N
599	chr6_qbl_hap6	1858759	1858760	rs9262120	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p21.33	ABCF1	rs9262120-A	NR	3E-8		5.562	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
599	chr6_qbl_hap6	1859312	1859313	rs3095276	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	6p21.33	NR	rs3095276-?	NR	5E-6		0.0784	[0.045-0.112] unit increase	Illumina [at least 560000] (imputed)	N
599	chr6_qbl_hap6	1864378	1864379	rs1264423	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.33		rs1264423-T	0.489	1E-18				Affymetrix [10369434] (imputed)	N
599	chr6_qbl_hap6	1864378	1864379	rs1264423	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	6p21.33	PPP1R10	rs1264423-C	0.5121	6E-16		0.02836222	[0.021-0.035] unit decrease	Affymetrix [~ 2500000] (imputed)	N
599	chr6_qbl_hap6	1866748	1866749	rs9262122	30169916	Sun Y	2018-08-31	J Eur Acad Dermatol Venereol	Investigation of the Predisposing Factor of Pemphigus and its clinical subtype through a Genome-wide association and next generation sequence analysis.	Pemphigus vulgaris	101 Chinese ancestry cases, 844 Chinese ancestry controls	at least 56 Chinese ancestry cases, up to 996 Chinese ancestry controls	6p21.33	NR	rs9262122-?	NR	5E-6	(adjusted for HLA-DRB1*14)	2.73		Illumina [5546030] (imputed)	N
599	chr6_qbl_hap6	1869687	1869688	rs1264419	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	6p21.33	NR	rs1264419-C	0.5128	9E-10		1.037	[1.03-1.05]	Affymetrix, Illumina [NR] (imputed)	N
599	chr6_qbl_hap6	1871241	1871242	rs2267637	33002439	Jin G	2020-10-01	Lancet Oncol	Genetic risk, incident gastric cancer, and healthy lifestyle: a meta-analysis of genome-wide association studies and prospective cohort study.	Gastric cancer	10,254 Han Chinese ancestry cases, 10,914 Han Chinese ancestry controls	NA	6p21.33	NR	rs2267637-T	0.31	3E-6		1.11	NR	Affymetrix, Illumina [6957974] (imputed)	N
599	chr6_qbl_hap6	1877039	1877040	rs55777621	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6p21.33	NR	rs55777621-?	NR	4E-12				Affymetrix [~ 8270000] (imputed)	N
599	chr6_qbl_hap6	1882292	1882293	rs111296996	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	6p21.33	MRPS18B	rs111296996-A	0.9872	5E-6		0.2039	[0.12-0.29] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
599	chr6_qbl_hap6	1886434	1886435	rs148828689	32599975	Bae JS	2020-06-30	Cancer Res Treat	Genome-Wide Association Study for the Identification of Novel Genetic Variants Associated with the Risk of Neuroblastoma in Korean Children.	Neuroblastoma (pediatric)	296 Korean ancestry child cases, 1,000 Korean ancestry adult controls	NA	6p21.33	MRPS18B	rs148828689-?		4E-18		7.8	[4.7-12.9]	Illumina [NR] (imputed)	N
599	chr6_qbl_hap6	1894138	1894139	rs12665339	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.33		rs12665339-A	0.85	3E-28				Affymetrix [10369434] (imputed)	N
599	chr6_qbl_hap6	1894138	1894139	rs12665339	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	6p21.33	ATAT1	rs12665339-G	0.17	6E-9		1.06	[1.04-1.08]	Illumina [20370935] (imputed)	N
599	chr6_qbl_hap6	1920147	1920148	rs1076829	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	DHX16	rs1076829-C	NR	4E-8		0.0176091	[0.011-0.024] unit decrease	Affymetrix [127266] (imputed)	N
599	chr6_qbl_hap6	1921183	1921184	rs1076828	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	DHX16	rs1076828-A	NR	2E-8		0.0180204	[0.012-0.024] unit decrease	Affymetrix [323858] (imputed)	N
599	chr6_qbl_hap6	1921888	1921889	rs74917683	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p21.33	NR	rs74917683-?	NR	2E-11		0.1491	[0.1-0.19] unit increase	Illumina [at least 560000] (imputed)	N
599	chr6_qbl_hap6	1926523	1926524	rs55740398	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	6p21.33		rs55740398-A	0.0027098	6E-6		0.29793	[0.17-0.43] unit increase	Affymetrix [15580782] (imputed)	N
599	chr6_qbl_hap6	1926806	1926807	rs3094097	31272903	Sunadome H	2019-07-01	Allergol Int	Correlation between eosinophil count, its genetic background and body mass index: The Nagahama Study.	Eosinophil counts	4,206 East Asian ancestry individuals	NA	6p21.33	NR	rs3094097-G	0.22	2E-9		0.1545	NR unit increase	Illumina [103680] (imputed)	N
599	chr6_qbl_hap6	1942958	1942959	rs9262142	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p21.33	NR	rs9262142-A	0.1166	3E-6	(EA)	0.0489	[0.028-0.069] unit decrease	Illumina [~ 11800000] (imputed)	N
599	chr6_qbl_hap6	1943250	1943251	rs2394392	31272903	Sunadome H	2019-07-01	Allergol Int	Correlation between eosinophil count, its genetic background and body mass index: The Nagahama Study.	Eosinophil counts	4,650 East Asian ancestry individuals	NA	6p21.33	NR	rs2394392-G	0.18	2E-8		0.1481	NR unit increase	Illumina [103680] (imputed)	N
599	chr6_qbl_hap6	1945713	1945714	rs9262143	33909500	Moll M	2021-04-28	Am J Physiol Lung Cell Mol Physiol	A Systematic Analysis of Protein-altering Exonic Variants in Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease	up to 31,465 European ancestry cases, up to 203,688 European ancestry controls, up to 1,413 African ancestry cases, up to 6,080 African ancestry controls, up to 287 East Asian ancestry cases, up to 7,484 East Asian ancestry controls, up to 61 Hispanic cases, up to 613 Hispanic controls	NA	6p21.33	PPP1R18	rs9262143-T	0.14	1E-13		1.11	[1.08 -1.15]	Illumina [at least 109036]	N
599	chr6_qbl_hap6	1945713	1945714	rs9262143	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p21.33	PPP1R18	rs9262143-T		3E-28		0.036	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
599	chr6_qbl_hap6	1945714	1945715	rs138394556	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	6p21.33	NRM	rs138394556-A	0.1475	2E-8		0.018794373	[0.012-0.025] unit decrease	Affymetrix [11515109] (imputed)	N
599	chr6_qbl_hap6	1949779	1949780	rs2269705	27151647	Chen G	2016-05-05	Addict Biol	An association study revealed substantial effects of dominance, epistasis and substance dependence co-morbidity on alcohol dependence symptom count.	Alcohol dependence symptom count	2,605 European ancestry individuals, 1,233 African American individuals	NA	6p21.33	NRM	rs2269705-?		3E-10	(additive)	0.266	[0.18-0.35] unit decrease	Illumina [974863]	N
599	chr6_qbl_hap6	1949947	1949948	rs3094092	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	6p21.33	NRM	rs3094092-T	NR	2E-8		0.036598	[0.024-0.049] unit increase	Illumina [13520550] (imputed)	N
599	chr6_qbl_hap6	1955997	1955998	rs137934746	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p21.33	NR	rs137934746-?	NR	1E-6		0.2471	[0.15-0.35] unit decrease	Illumina [at least 560000] (imputed)	N
599	chr6_qbl_hap6	1957382	1957383	rs370462350	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	6p21.33	NRM	rs370462350-?	NR	2E-9		0.375	[0.25-0.5] unit decrease	Illumina [34656550] (imputed)	N
599	chr6_qbl_hap6	1958456	1958457	rs149856401	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Stable angina pectoris	17,894 European ancestry cases, 325,132 European ancestry controls, 18,833 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	6p21.33		rs149856401-G	NR	1E-13		0.1724	[0.13-0.22] unit increase	Affymetrix, Illumina [20456336] (imputed)	N
599	chr6_qbl_hap6	1959377	1959379	rs147637345	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p21.33	NR	rs147637345-?	NR	1E-7		0.0819	[0.052-0.112] unit increase	Illumina [at least 560000] (imputed)	N
599	chr6_qbl_hap6	1959377	1959379	rs147637345	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	6p21.33	NR	rs147637345-?	NR	4E-6		0.0842	[0.048-0.12] unit decrease	Illumina [at least 560000] (imputed)	N
599	chr6_qbl_hap6	1959600	1959601	rs9468811	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs9468811-C	0.937946818961625	6E-7	(IGP19)	0.3471	[0.21-0.48] unit decrease	Illumina [~ 2500000] (imputed)	N
599	chr6_qbl_hap6	1959600	1959601	rs9468811	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs9468811-C	0.937725588025022	3E-6	(IGP74)	0.3262	[0.19-0.46] unit decrease	Illumina [~ 2500000] (imputed)	N
599	chr6_qbl_hap6	1959600	1959601	rs9468811	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs9468811-C	0.937641317877842	2E-6	(IGP75)	0.3304	[0.19-0.47] unit decrease	Illumina [~ 2500000] (imputed)	N
599	chr6_qbl_hap6	1959600	1959601	rs9468811	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs9468811-C	0.937418950958538	3E-6	(IGP69)	0.3228	[0.19-0.46] unit decrease	Illumina [~ 2500000] (imputed)	N
599	chr6_qbl_hap6	1959600	1959601	rs9468811	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs9468811-C	0.937308425901202	5E-7	(IGP76)	0.3469	[0.21-0.48] unit increase	Illumina [~ 2500000] (imputed)	N
599	chr6_qbl_hap6	1962200	1962201	rs115448006	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.33	NR	rs115448006-T	0.01	5E-11		0.599756	[0.42-0.78] unit increase	Affymetrix [up to 8900000] (imputed)	N
600	chr6_qbl_hap6	1972558	1972559	rs3094093	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs3094093-T	0.107712365538735	8E-6	(IGP65)	0.2214	[0.12-0.32] unit decrease	Illumina [~ 2500000] (imputed)	N
600	chr6_qbl_hap6	1972558	1972559	rs3094093	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs3094093-T	0.107418420152946	8E-6	(IGP2)	0.2231	[0.13-0.32] unit increase	Illumina [~ 2500000] (imputed)	N
600	chr6_qbl_hap6	1972558	1972559	rs3094093	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs3094093-T	0.107325880449438	3E-6	(IGP42)	0.2336	[0.14-0.33] unit increase	Illumina [~ 2500000] (imputed)	N
600	chr6_qbl_hap6	1978350	1978351	rs4713354	31272903	Sunadome H	2019-07-01	Allergol Int	Correlation between eosinophil count, its genetic background and body mass index: The Nagahama Study.	Eosinophil counts	4,650 East Asian ancestry individuals	NA	6p21.33	MDC1	rs4713354-C	0.216	2E-8		0.14	NR unit increase	Illumina [103680] (imputed)	N
600	chr6_qbl_hap6	1980402	1980403	rs117670375	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Gynecologic disease (multivariate analysis)	up to 7,975 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs117670375-?		1E-8	(uterine cervical cancer)			Illumina [7645193] (imputed)	N
600	chr6_qbl_hap6	1980402	1980403	rs117670375	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Gynecologic disease	7,975 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs117670375-?		1E-7		1.16	[1.10-1.22]	Illumina [7645193] (imputed)	N
600	chr6_qbl_hap6	1980402	1980403	rs117670375	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Gynecologic disease	7,315 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs117670375-?		2E-10				Illumina [7645193] (imputed)	N
600	chr6_qbl_hap6	1980402	1980403	rs117670375	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs117670375-?		2E-9		1.07	[1.05-1.09]	Illumina [7645193] (imputed)	N
600	chr6_qbl_hap6	1980402	1980403	rs117670375	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs117670375-?		3E-10		1.92	[1.57-2.35]	Illumina [7645193] (imputed)	N
600	chr6_qbl_hap6	1981357	1981358	rs3132584	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	TUBB	rs3132584-T	NR	1E-8		0.021321	[0.014-0.029] unit decrease	Affymetrix [323858] (imputed)	N
600	chr6_qbl_hap6	1981357	1981358	rs3132584	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	TUBB	rs3132584-T	NR	3E-8		0.0206734	[0.013-0.028] unit decrease	Affymetrix [127266] (imputed)	N
600	chr6_qbl_hap6	1981357	1981358	rs3132584	32989287	Cuellar-Partida G	2020-09-28	Nat Hum Behav	Genome-wide association study identifies 48 common genetic variants associated with handedness.	Left-handedness	1,766,671 European ancestry individuals	NA	6p21.33	TUBB	rs3132584-T	0.2056	6E-25		0.95483845	[NR]	Illumina [12493444] (imputed)	N
600	chr6_qbl_hap6	1986052	1986053	rs7781	33723403	Sha Z	2021-03-15	Nat Hum Behav	The genetic architecture of structural left-right asymmetry of the human brain.	Left-right brain asymmetry	32,256 European ancestry individuals	NA	6p21.33	TUBB	rs7781-G	0.24	2E-10				NR [9312144] (imputed)	N
600	chr6_qbl_hap6	1987305	1987306	rs3094128	31504236	Wiberg A	2019-09-05	Brain	Handedness, language areas and neuropsychiatric diseases: insights from brain imaging and genetics.	Handedness (non-right-handed vs right-handed)	44,631 European ancestry non-right-handed individuals, 356,567 European ancestry right-handed individuals	NA	6p21.33	TUBB, MICB, FLOT1	rs3094128-?	0.789	3E-8		1.0526316	[1.03-1.06]	NR [~ 11000000] (imputed)	N
600	chr6_qbl_hap6	1990379	1990380	rs3094127	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p21.33	FLOT1	rs3094127-A	NR	2E-8		5.644	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
600	chr6_qbl_hap6	1991473	1991474	rs1064627	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	FLOT1	rs1064627-G	NR	2E-8		0.0196765	[0.013-0.027] unit increase	Affymetrix [321016] (imputed)	N
600	chr6_qbl_hap6	1991473	1991474	rs1064627	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p21.33	NR	rs1064627-G	0.2	3E-13		1.15	[1.11-1.2]	Affymetrix [9886854] (imputed)	N
600	chr6_qbl_hap6	1991473	1991474	rs1064627	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p21.33	NR	rs1064627-G	0.2	1E-18			[NR]	Affymetrix [9886854] (imputed)	N
600	chr6_qbl_hap6	1991473	1991474	rs1064627	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p21.33	NR	rs1064627-G	0.2	2E-16		1.13	[1.1-1.16]	Affymetrix [9886854] (imputed)	N
600	chr6_qbl_hap6	1991473	1991474	rs1064627	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p21.33	NR	rs1064627-G	0.2	2E-17			[NR]	Affymetrix [9886854] (imputed)	N
600	chr6_qbl_hap6	1991473	1991474	rs1064627	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in non-current smokers	16,488 European ancestry cases, 169,688 European ancestry controls	NA	6p21.33	NR	rs1064627-G	0.2	2E-16		1.13	[1.1-1.16]	Affymetrix [9886854] (imputed)	N
600	chr6_qbl_hap6	1991473	1991474	rs1064627	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in never smokers	8,631 European ancestry cases, 120,544 European ancestry controls	NA	6p21.33	NR	rs1064627-G	0.2	1E-13		1.16	[1.11-1.2]	Affymetrix [9886854] (imputed)	N
600	chr6_qbl_hap6	1991473	1991474	rs1064627	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in ever smokers	12,446 European ancestry cases, 59,145 European ancestry controls	NA	6p21.33	NR	rs1064627-G	0.2	1E-7		1.1	[1.06-1.14]	Affymetrix [9886854] (imputed)	N
600	chr6_qbl_hap6	2006508	2006509	rs2284174	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	6p21.33	IER3	rs2284174-C	0.22	2E-21		1.12	[1.10-1.15]	Affymetrix, Illumina [6224355] (imputed)	N
600	chr6_qbl_hap6	2006508	2006509	rs2284174	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p21.33	NR	rs2284174-C	0.2189	1E-12		0.0102	[0.0075-0.0129] unit decrease	NR [7666894] (imputed)	N
600	chr6_qbl_hap6	2006736	2006737	rs3130662	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p21.33	IER3, DDR1	rs3130662-A	0.334	1E-25				Illumina [118177]	N
600	chr6_qbl_hap6	2010168	2010169	rs3129972	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of saturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	6p21.33		rs3129972-C	0.858209	1E-8		0.0336102	[0.022-0.045] unit decrease	NR [11722792] (imputed)	N
600	chr6_qbl_hap6	2010945	2010946	rs2535324	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	RN7SL353P	rs2535324-C	NR	2E-9		0.0198337	[0.013-0.026] unit decrease	Affymetrix [127266] (imputed)	N
600	chr6_qbl_hap6	2013221	2013222	rs28780111	30552173	Aterido A	2018-12-14	Ann Rheum Dis	Genetic variation at the glycosaminoglycan metabolism pathway contributes to the risk of psoriatic arthritis but not psoriasis.	Psoriatic arthritis	744 Spanish ancestry cases, 1,454 Spanish ancestry controls	1,430 cases, 1,417 controls	6p21.33	NR	rs28780111-?	NR	7E-11		6.51	[NR] z-score increase	Illumina [1387382] (imputed)	N
600	chr6_qbl_hap6	2016953	2016954	rs12213680	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	6p21.33	RN7SL353P	rs12213680-A	0.171261	4E-17		0.0263628	[0.02-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
600	chr6_qbl_hap6	2019850	2019851	rs3095340	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p21.33	HCG20	rs3095340-A	NR	4E-8		5.51	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
600	chr6_qbl_hap6	2020696	2020697	rs3131035	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCG20	rs3131035-G	NR	4E-11		0.024688	[0.017-0.032] unit decrease	Affymetrix [323858] (imputed)	N
600	chr6_qbl_hap6	2020696	2020697	rs3131035	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HCG20	rs3131035-G	NR	4E-10		0.0233656	[0.016-0.031] unit decrease	Affymetrix [127266] (imputed)	N
600	chr6_qbl_hap6	2023251	2023252	rs9262172	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.33		rs9262172-T	0.742	1E-26				Affymetrix [10369434] (imputed)	N
600	chr6_qbl_hap6	2023873	2023874	rs3094121	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCG20	rs3094121-T	NR	3E-8		0.0199067	[0.013-0.027] unit increase	Affymetrix [323123] (imputed)	N
600	chr6_qbl_hap6	2029058	2029059	rs12526186	19721433	McClay JL	2009-09-01	Mol Psychiatry	Genome-wide pharmacogenomic analysis of response to treatment with antipsychotics.	Response to antipsychotic treatment	494 European ancestry cases, 244 African American and other ancestry cases	NA	6p21.33	intergenic	rs12526186-?	NR	3E-6	(risperidone)	9.0	[NR] % variance	Affymetrix, Perlegen [492900]	N
600	chr6_qbl_hap6	2030393	2030394	rs3094117	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine without aura	7,107 European ancestry cases, 69,427 European ancestry controls	NA	6p21.33	intergenic	rs3094117-?	0.77	2E-6		1.12	[1.06-1.18]	Affymetrix, Illumina [~ 2300000] (imputed)	N
600	chr6_qbl_hap6	2038705	2038706	rs3129977	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p21.33	HCG20	rs3129977-A	NR	8E-11		6.498	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
600	chr6_qbl_hap6	2045830	2045831	rs147206302	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	6p21.33	HCG20	rs147206302-T	0.0032	7E-9		0.1843882	[0.12-0.25] unit decrease	Affymetrix [~ 2500000] (imputed)	N
600	chr6_qbl_hap6	2051368	2051369	rs3131043	31089142	Law PJ	2019-05-14	Nat Commun	Association analyses identify 31 new risk loci for colorectal cancer susceptibility.	Colorectal cancer	31,197 European ancestry cases, 61,770 European ancestry controls	NA	6p21.33	NR	rs3131043-G	0.43	3E-8		1.07	[1.05-1.1]	Affymetrix, Illumina [> 10000000] (imputed)	N
600	chr6_qbl_hap6	2051759	2051760	rs3129981	31358989	Gelernter J	2019-07-29	Nat Neurosci	Genome-wide association study of post-traumatic stress disorder reexperiencing symptoms in >165,000 US veterans.	Post-traumatic stress disorder (re-experiencing symptoms)	146,660 European ancestry individuals, 19,983 African American individuals	117,900 European ancestry individuals	6p21.33	NR	rs3129981-?	NR	2E-7	(AA)	0.347197	[NR] unit increase	Affymetrix [49134253] (imputed)	N
600	chr6_qbl_hap6	2054474	2054475	rs3129984	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p21.33	NR	rs3129984-T	0.1179	8E-6	(EA)	0.0465	[0.026-0.067] unit decrease	Illumina [~ 11800000] (imputed)	N
600	chr6_qbl_hap6	2054995	2054996	rs3131057	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	6p21.33	HCG20, LINC00243	rs3131057-C	0.6028	8E-17		0.03073045	[0.024-0.038] unit decrease	Affymetrix [~ 2500000] (imputed)	N
600	chr6_qbl_hap6	2055036	2055037	rs11961980	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	6p21.33	HCG20, LINC00243	rs11961980-T	0.0038	2E-12		0.2133187	[0.15-0.27] unit decrease	Affymetrix [~ 2500000] (imputed)	N
600	chr6_qbl_hap6	2055036	2055037	rs11961980	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	6p21.33	HCG20, LINC00243	rs11961980-T	0.0038	1E-11		0.206328	[0.15-0.27] unit decrease	Affymetrix [~ 2500000] (imputed)	N
600	chr6_qbl_hap6	2056193	2056194	rs3131060	25827949	Kunz M	2015-05-04	Exp Dermatol	Genome-wide association study identifies new susceptibility loci for cutaneous lupus erythematosus.	Cutaneous lupus erythematosus	151 European ancestry cases, 1,288 European ancestry controls	219 European ancestry cases, 262 European ancestry controls	6p21.33	FLOT1	rs3131060-A	0.112	1E-13		2.3	[1.71-3.11]	Affymetrix [906600]	N
600	chr6_qbl_hap6	2056795	2056796	rs3131064	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p21.33	LINC00243	rs3131064-T	NR	2E-9		5.983	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
600	chr6_qbl_hap6	2057377	2057377	rs368739359	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	LINC00243	rs368739359-TAATG	NR	3E-8		0.0252092	[0.016-0.034] unit increase	Affymetrix [323123] (imputed)	N
600	chr6_qbl_hap6	2058483	2058484	rs1264376	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	LINC00243	rs1264376-A	NR	2E-13		0.0302583	[0.022-0.038] unit decrease	Affymetrix [323858] (imputed)	N
600	chr6_qbl_hap6	2058483	2058484	rs1264376	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	LINC00243	rs1264376-A	NR	3E-12		0.0288183	[0.021-0.037] unit decrease	Affymetrix [127266] (imputed)	N
600	chr6_qbl_hap6	2058799	2058800	rs10947096	29534301	Nishida N	2018-03-13	Hepatology	Key HLA-DRB1-DQB1 haplotypes and role of the BTNL2 gene for response to a hepatitis B vaccine.	Response to hepatitis B vaccine	107 Japanese ancestry low responder individuals, 351 Japanese ancestry intermediate responder individuals, 735 Japanese ancestry high responder individuals	NA	6p21.33	DDR1	rs10947096-?		2E-6		0.197	unit increase	Affymetrix [427664]	N
600	chr6_qbl_hap6	2059108	2059109	rs3129987	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Stable angina pectoris	18,833 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	6p21.33		rs3129987-C	0.884926231	3E-14		0.14236389	[0.11-0.18] unit decrease	Illumina [13427711] (imputed)	N
600	chr6_qbl_hap6	2059115	2059116	rs1264375	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	LINC00243	rs1264375-C	NR	1E-9		0.0209768	[0.014-0.028] unit decrease	Affymetrix [323858] (imputed)	N
600	chr6_qbl_hap6	2059849	2059850	rs4587207	25469926	Gottlieb DJ	2014-12-02	Mol Psychiatry	Novel loci associated with usual sleep duration: the CHARGE Consortium Genome-Wide Association Study.	Sleep duration	47,180 European ancestry individuals	4,771 African American individuals	6p21.33	FLOT1, LINC00243, IER3	rs4587207-G	0.20	2E-8	(EA)	3.14	[2.04-4.24] unit decrease	Affymetrix, Illumina [2033301]	N
600	chr6_qbl_hap6	2063191	2063192	rs1264371	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p21.33	NR	rs1264371-T	0.352	2E-8	(IFNAR2_of_CD20p)			Illumina [5084123] (imputed)	N
600	chr6_qbl_hap6	2063610	2063611	rs114376405	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p21.33	NR	rs114376405-?	NR	2E-6		0.2339	[0.14-0.33] unit increase	Illumina [at least 560000] (imputed)	N
600	chr6_qbl_hap6	2066231	2066232	rs4713376	30958311	Tao F	2019-04-03	J Neuromuscul Dis	Modifier Gene Candidates in Charcot-Marie-Tooth Disease Type 1A: A Case-Only Genome-Wide Association Study.	Decreased fine motor function in Charcot-Marie-Tooth disease 1A (eating with utensils)	132 European ancestry severe cases, 288 European ancestry mild cases	NA	6p21.33	HCG20, LINC00243, TUBB, FLOT1, IER3	rs4713376-C	0.174	1E-6		3.288	[2.041-5.297]	Illumina [600000]	N
600	chr6_qbl_hap6	2067275	2067276	rs3130783	23455636	Fritsche LG	2013-03-03	Nat Genet	Seven new loci associated with age-related macular degeneration.	Age-related macular degeneration	6,713 European ancestry cases, 48,402 European ancestry contols, 110 Southern Indian ancestry cases, 119 Southern Indian ancestry controls, 827 Japanese ancestry cases, 3,323 Japanese ancestry controls	9,070 European ancestry cases, 7,683 European ancestry contols, 461 East Asian ancestry cases, 547 East Asian ancestry controls	6p21.33	IER3, DDR1	rs3130783-A	0.79	2E-11		1.16	[1.11-1.20]	Affymetrix, Illumina [2442884] (imputed)	N
600	chr6_qbl_hap6	2068049	2068050	rs151302046	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.33	NR	rs151302046-A	0.011	6E-12		0.591132	[0.42-0.76] unit increase	Affymetrix [up to 8900000] (imputed)	N
600	chr6_qbl_hap6	2068519	2068520	rs1264363	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p21.33	NR	rs1264363-?	NR	8E-16		0.1077	[0.081-0.134] unit decrease	Illumina [at least 560000] (imputed)	N
600	chr6_qbl_hap6	2071203	2071204	rs73437885	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	6p21.33	NR	rs73437885-?	NR	8E-6		0.0081424	[0.0046-0.0117] unit increase	Affymetrix [805426] (imputed)	N
600	chr6_qbl_hap6	2073208	2073208	rs36091944	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	LINC00243	rs36091944-C	NR	3E-8		0.0230514	[0.015-0.031] unit decrease	Affymetrix [321016] (imputed)	N
600	chr6_qbl_hap6	2074925	2074926	rs886424	25936594	Tomer Y	2015-04-27	J Autoimmun	Genome wide identification of new genes and pathways in patients with both autoimmune thyroiditis and type 1 diabetes.	Type 1 diabetes and autoimmune thyroid diseases	346 European ancestry cases, 727 European ancestry controls	185 European ancestry cases, 340 European ancestry controls	6p21.33	IER3, DDR1	rs886424-A	NR	3E-14		2.2107		Illumina [514008]	N
600	chr6_qbl_hap6	2074925	2074926	rs886424	22688191	Bergen SE	2012-06-12	Mol Psychiatry	Genome-wide association study in a Swedish population yields support for greater CNV and MHC involvement in schizophrenia compared with bipolar disorder.	Bipolar disorder and schizophrenia	2,111 European ancestry schizophrenia cases, 836 European ancestry bipolar disorder cases, 2,535 European ancestry controls	NA	6p21.33	other genes, MHC	rs886424-?	NR	9E-7		1.37	[NR]	Affymetrix [745006]	N
600	chr6_qbl_hap6	2076162	2076163	rs9501489	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	LINC00243	rs9501489-A	NR	2E-10		0.0672114	[0.047-0.088] unit decrease	Affymetrix [321016] (imputed)	N
600	chr6_qbl_hap6	2076162	2076163	rs9501489	31235810	Fung K	2019-06-24	Sci Rep	Genome-wide association study identifies loci for arterial stiffness index in 127,121 UK Biobank participants.	Arterial stiffness index	127,121 European ancestry individuals	NA	6p21.33	DDR1	rs9501489-G	0.981	4E-6		0.067	[0.04-0.094] unit increase	Affymetrix [~ 10446505] (imputed)	N
600	chr6_qbl_hap6	2076407	2076408	rs142090224	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Chickenpox	107,769 European ancestry cases, 15,982 European ancestry controls	NA	6p21.33	NR	rs142090224-?	NR	3E-6		0.1169	[0.068-0.166] unit decrease	Illumina [at least 560000] (imputed)	N
600	chr6_qbl_hap6	2077113	2077114	rs1264355	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	6p21.33	NR	rs1264355-?	NR	2E-7		0.0847	[0.053-0.117] unit decrease	Illumina [at least 560000] (imputed)	N
600	chr6_qbl_hap6	2077264	2077265	rs574050376	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	LINC00243	rs574050376-T	NR	5E-9		0.082304	[0.055-0.11] unit decrease	Affymetrix [321016] (imputed)	N
600	chr6_qbl_hap6	2077264	2077265	rs574050376	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.33	NR	rs574050376-T	0.02613	2E-8	(AFMID)	0.0124	NR unit increase	Illumina [1671387] (imputed)	N
600	chr6_qbl_hap6	2080686	2080687	rs1264353	27659466	van der Harst P	2016-09-27	J Am Coll Cardiol	52 Genetic Loci Influencing Myocardial Mass.	QRS complex (Cornell)	up to 58,172 European ancestry individuals, up to 690 Orcadian (founder/genetic isolate) individuals	13,263 European ancestry individuals, 3,603 African American individuals, 4,619 Indian ancestry individuals	6p21.33	NR	rs1264353-?	NR	7E-6	(EA)			Affymetrix, Illumina, Perlegen [2766983] (imputed)	N
600	chr6_qbl_hap6	2084118	2084119	rs13208886	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p21.33	NR	rs13208886-?	NR	9E-12		0.1216	[0.087-0.156] unit decrease	Illumina [at least 560000] (imputed)	N
600	chr6_qbl_hap6	2085042	2085043	rs1264351	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	6p21.33	AK098012	rs1264351-C	0.1265	2E-8	(EA)	0.0032	[0.002-0.0044] unit decrease	Affymetrix [NR] (imputed)	N
600	chr6_qbl_hap6	2085042	2085043	rs1264351	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	6p21.33	AK098012	rs1264351-C	0.126	9E-10		0.0033	[0.0021-0.0045] unit decrease	Affymetrix [NR] (imputed)	N
600	chr6_qbl_hap6	2087272	2087273	rs4248151	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.33		rs4248151-T	0.722	2E-11				Affymetrix [10369434] (imputed)	N
600	chr6_qbl_hap6	2088097	2088098	rs7772131	22566498	Turner ST	2012-05-07	Hypertension	Genomic association analysis identifies multiple loci influencing antihypertensive response to an angiotensin II receptor blocker.	Response to angiotensin II receptor blocker therapy	198 European ancestry hypertensive individuals, 193 African American hypertensive individuals	NA	6p21.33	C6orf214	rs7772131-?	NR	3E-6	(AA)	6.73	[0.89-12.57] unit decrease	Affymetrix [~ 2300000] (imputed)	N
600	chr6_qbl_hap6	2089471	2089472	rs1264350	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	6p21.33	IER3, DDR1	rs1264350-T	NR	1E-7		0.151743	[0.096-0.208] unit increase	Illumina [at least 950000] (imputed)	N
600	chr6_qbl_hap6	2089585	2089586	rs1264349	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA	6p21.33	NR	rs1264349-?	NR	4E-6		0.0514	[0.03-0.073] unit decrease	Illumina [at least 560000] (imputed)	N
600	chr6_qbl_hap6	2090917	2090918	rs7749924	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs7749924-C	0.851598582628062	8E-6	(IGP32)	0.2204	[0.12-0.32] unit increase	Illumina [~ 2500000] (imputed)	N
600	chr6_qbl_hap6	2091201	2091202	rs78868683	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs78868683-?		3E-7		1.05	[1.03-1.08]	Illumina [7645193] (imputed)	N
600	chr6_qbl_hap6	2091201	2091202	rs78868683	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs78868683-?		1E-7		1.68	[1.39-2.04]	Illumina [7645193] (imputed)	N
600	chr6_qbl_hap6	2091248	2091249	rs3130646	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.33	Intergenic	rs3130646-G	NR	3E-6		0.0231949	[0.013-0.033] unit decrease	Illumina [13520550] (imputed)	N
600	chr6_qbl_hap6	2091621	2091622	rs1264347	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in diabetes	70,762 European ancestry individuals, 20,967 African American individuals	NA	6p21.33	AK098012	rs1264347-T	0.109	1E-12		1.01	[0.73-1.29] unit decrease	Affymetrix [NR] (imputed)	N
600	chr6_qbl_hap6	2091621	2091622	rs1264347	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.33	LINC00243	rs1264347-T	0.1326	5E-7		0.0552	[0.034-0.077] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
600	chr6_qbl_hap6	2092321	2092322	rs9501030	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	6p21.33	IER3, DDR1	rs9501030-A	0.16	4E-10		6.27	z-score increase	Affymetrix [4311822] (imputed)	N
600	chr6_qbl_hap6	2092321	2092322	rs9501030	20848476	Haritunians T	2010-11-01	Inflamm Bowel Dis	Genetic predictors of medically refractory ulcerative colitis.	Ulcerative colitis	324 European ancestry medically refractory ulcerative colitis cases, 537 European ancestry non-medically refractory ulcerative colitis cases, 2,601 European ancestry controls	NA	6p21.33	IER3, GTF2H4, FLOT1, VARS2, MIR588, DDR1	rs9501030-A	NR	4E-6	(Analysis II)			Illumina [313720]	N
601	chr6_qbl_hap6	2101684	2101685	rs2517582	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG27H4.8	rs2517582-T	NR	3E-11		0.019246	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
601	chr6_qbl_hap6	2101684	2101685	rs2517582	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG27H4.8	rs2517582-T	NR	8E-11		0.0187782	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
601	chr6_qbl_hap6	2101684	2101685	rs2517582	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG27H4.8	rs2517582-T	NR	4E-9		0.0185153	[0.012-0.025] unit decrease	Affymetrix [323123] (imputed)	N
601	chr6_qbl_hap6	2101684	2101685	rs2517582	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG27H4.8	rs2517582-T	NR	3E-9		0.0173144	[0.012-0.023] unit increase	Affymetrix [321169] (imputed)	N
601	chr6_qbl_hap6	2101684	2101685	rs2517582	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	6p21.33	NR	rs2517582-T	0.383721	5E-18		0.0135974	[0.011-0.016] unit increase	Affymetrix [16578495] (imputed)	N
601	chr6_qbl_hap6	2101684	2101685	rs2517582	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	6p21.33	NR	rs2517582-T	0.38430299999999995	2E-18		0.0277124	[0.022-0.033] unit increase	Affymetrix [16580851] (imputed)	N
601	chr6_qbl_hap6	2101684	2101685	rs2517582	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.33	XXbac-BPG27H4.8	rs2517582-T	0.4084	4E-6		0.0319	[0.018-0.045] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
601	chr6_qbl_hap6	2101684	2101685	rs2517582	28468790	Agopian AJ	2017-06-01	Circ Cardiovasc Genet	Genome-Wide Association Studies and Meta-Analyses for Congenital Heart Defects.	Conotruncal heart defects (maternal effects)	up to 838 European ancestry trios	NA	6p21.33	GTF2H4, VARS2	rs2517582-?	NR	3E-7		1.174787	[1.104793-1.249214]	Illumina [at least 4756722] (imputed)	N
601	chr6_qbl_hap6	2102978	2102979	rs2517580	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG27H4.8	rs2517580-A	NR	4E-8		0.0175646	[0.011-0.024] unit increase	Affymetrix [319769] (imputed)	N
601	chr6_qbl_hap6	2110801	2110802	rs2844662	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.33		rs2844662-C	0.624	2E-43				Affymetrix [10369434] (imputed)	N
601	chr6_qbl_hap6	2111270	2111271	rs139507938	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1a levels	3,522 Finnish ancestry individuals	NA	6p21.33	NR	rs139507938-G	NR	7E-6		0.907	[0.51-1.3] SD units increase	NR [10700000] (imputed)	N
601	chr6_qbl_hap6	2113295	2113296	rs2263298	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p21.33	NR	rs2263298-?	NR	3E-9		0.0842	[0.056-0.112] unit decrease	Illumina [at least 560000] (imputed)	N
601	chr6_qbl_hap6	2116751	2116752	rs2844660	28468790	Agopian AJ	2017-06-01	Circ Cardiovasc Genet	Genome-Wide Association Studies and Meta-Analyses for Congenital Heart Defects.	Congenital heart disease (maternal effect)	1,119 European ancestry trios	NA	6p21.33	intergenic	rs2844660-?	NR	1E-6		1.365322	[1.204119-1.548106]	Illumina [at least 4756722] (imputed)	N
601	chr6_qbl_hap6	2117122	2117123	rs11759095	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	6p21.33	NR	rs11759095-?	NR	1E-14		7.7	NR z score decrease	Illumina [at least 830937] (imputed)	N
601	chr6_qbl_hap6	2117442	2117443	rs758778	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.33		rs758778-T	0.759	4E-32				Affymetrix [10369434] (imputed)	N
601	chr6_qbl_hap6	2117442	2117443	rs758778	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p21.33		rs758778-T	0.759	3E-25				Affymetrix [10369434] (imputed)	N
601	chr6_qbl_hap6	2125057	2125058	rs2535326	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	RN7SKP186	rs2535326-T	NR	1E-10		0.0207397	[0.014-0.027] unit increase	Affymetrix [323858] (imputed)	N
601	chr6_qbl_hap6	2125057	2125058	rs2535326	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	RN7SKP186	rs2535326-T	NR	3E-9		0.019109	[0.013-0.025] unit increase	Affymetrix [127266] (imputed)	N
601	chr6_qbl_hap6	2125113	2125114	rs3130792	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DDR1	5,364 Icelandic ancestry individuals	NA	6p21.33		rs3130792-T	0.4372	7E-54		0.279081	[0.24-0.31] unit increase	Illumina [7506463] (imputed)	N
601	chr6_qbl_hap6	2131029	2131030	rs2535341	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p21.33	DDR1-AS1	rs2535341-C	NR	2E-8		0.0208511	[0.014-0.028] unit decrease	Affymetrix [323858] (imputed)	N
601	chr6_qbl_hap6	2138552	2138553	rs1264332	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	6p21.33	NR	rs1264332-C	0.35264300000000004	2E-22		0.0233666	[0.019-0.027] unit increase	Affymetrix [16583148] (imputed)	N
601	chr6_qbl_hap6	2141239	2141240	rs7756521	20041166	Fellay J	2009-12-24	PLoS Genet	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA		VARS2, DDR1, DPCR1	rs7756521-?	NR	1E-6	(progression)			Illumina [NR]	N
601	chr6_qbl_hap6	2142110	2142111	rs885910	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	DDR1	rs885910-T	NR	9E-9		0.0184374	[0.012-0.025] unit decrease	Affymetrix [323858] (imputed)	N
601	chr6_qbl_hap6	2142110	2142111	rs885910	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	DDR1	rs885910-T	NR	4E-8		0.0176635	[0.011-0.024] unit decrease	Affymetrix [127266] (imputed)	N
601	chr6_qbl_hap6	2150880	2150881	rs1264322	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking initiation (ever regular vs never regular)	up to 433,216 European ancestry individuals	NA	6p21.33	DDR1	rs1264322-A	0.146	2E-8		0.0171	[0.011-0.023] unit decrease	Illumina [~ 250000] (imputed)	N
601	chr6_qbl_hap6	2151240	2151241	rs7743661	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p21.33	DDR1	rs7743661-C	0.25	1E-6	(Turkish)	1.62	[1.33-1.97]	Illumina [up to 547389]	N
601	chr6_qbl_hap6	2159330	2159331	rs2524236	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	QRS duration	3,274 African American individuals, 13,420 Hispanic/Latino individuals, 126 Asian ancestry individuals, 226 Native American ancestry individuals	NA	6p21.33	HCG22	rs2524236-?	NR	1E-10		0.6324871	[0.44-0.83] unit decrease	Illumina [26566045] (imputed)	N
601	chr6_qbl_hap6	2166487	2166488	rs111782145	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	6p21.33	CDSN, DPCR1, GTF2H4	rs111782145-C	NR	2E-8	(Chinese)	1.2300123	[1.16-1.3]	Affymetrix, Illumina [up to 5107227] (imputed)	N
601	chr6_qbl_hap6	2169136	2169137	rs1052693	23028341	Yang X	2012-09-13	PLoS Genet	Genome-wide association study for serum complement C3 and C4 levels in healthy Chinese subjects.	Complement C3 and C4 levels	1,999 Han Chinese ancestry male individuals	1,496 Han Chinese ancestry male individuals	6p21.33	HLA-A	rs1052693-G	0.36	3E-48	(Serum level of C4)	0.1	[0.080-0.120] g/L increase	Illumina [1940245] (imputed)	N
601	chr6_qbl_hap6	2172620	2172621	rs886420	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p21.33	GTF2H4	rs886420-A	0.311	2E-24				Illumina [118177]	N
601	chr6_qbl_hap6	2172971	2172972	rs1264308	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Squamous cell lung carcinoma	8,350 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	6p21.33	NR	rs1264308-T	NR	6E-10		1.29	[1.19-1.40]	NR [NR] (imputed)	N
601	chr6_qbl_hap6	2172971	2172972	rs1264308	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Non-small cell lung cancer	27,120 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	6p21.33	NR	rs1264308-T	NR	2E-7		1.16	[1.1-1.23]	NR [NR] (imputed)	N
601	chr6_qbl_hap6	2177176	2177177	rs146114215	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.33		rs146114215-G	0.995	1E-22				Affymetrix [10369434] (imputed)	N
601	chr6_qbl_hap6	2177176	2177177	rs146114215	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	6p21.33		rs146114215-G	0.995	9E-15				Affymetrix [10369434] (imputed)	N
601	chr6_qbl_hap6	2177176	2177177	rs146114215	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	6p21.33		rs146114215-G	0.995	1E-16				Affymetrix [10369434] (imputed)	N
601	chr6_qbl_hap6	2177176	2177177	rs146114215	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs146114215-G	0.995	5E-26				Affymetrix [10369434] (imputed)	N
601	chr6_qbl_hap6	2180438	2180439	rs118124843	31537649	Salem RM	2019-09-19	J Am Soc Nephrol	Genome-Wide Association Study of Diabetic Kidney Disease Highlights Biology Involved in Glomerular Basement Membrane Collagen.	Microalbuminuria in type 1 diabetes	2,447 European ancestry cases, 12,113 European ancestry controls	NA	6p21.33	DDR1, VARS2	rs118124843-T	0.011	4E-8		3.79	[NR]	Illumina [up to 49000000] (imputed)	N
601	chr6_qbl_hap6	2183473	2183474	rs2074506	33909500	Moll M	2021-04-28	Am J Physiol Lung Cell Mol Physiol	A Systematic Analysis of Protein-altering Exonic Variants in Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease	up to 31,465 European ancestry cases, up to 203,688 European ancestry controls, up to 1,413 African ancestry cases, up to 6,080 African ancestry controls, up to 287 East Asian ancestry cases, up to 7,484 East Asian ancestry controls, up to 61 Hispanic cases, up to 613 Hispanic controls	NA	6p21.33	VARS2	rs2074506-G	0.65	3E-7		1.06	[1.03 -1.08]	Illumina [at least 109036]	N
601	chr6_qbl_hap6	2183861	2183862	rs753725	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	6p21.33	VARS2	rs753725-T	0.4062	1E-9		0.0205	[0.014-0.027] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
601	chr6_qbl_hap6	2183861	2183862	rs753725	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	6p21.33	VARS2	rs753725-T	0.4562	3E-7		0.020761	[0.013-0.029] mg/dL increase	Affymetrix, Illumina [8217339] (imputed)	N
601	chr6_qbl_hap6	2190744	2190745	rs2532929	28877031	Zhang G	2017-09-07	N Engl J Med	Genetic Associations with Gestational Duration and Spontaneous Preterm Birth.	Gestational age at birth (maternal effect)	43,568 European ancestry mothers	8,643 European ancestry mothers	6p21.33	SFTA2, VARS2, DPCR1	rs2532929-G	0.397	2E-6		0.622	[NR] unit decrease	Illumina [15635593] (imputed)	N
601	chr6_qbl_hap6	2192620	2192621	rs3095152	32771030	Tangtanatakul P	2020-08-08	Arthritis Res Ther	Meta-analysis of genome-wide association study identifies FBN2 as a novel locus associated with systemic lupus erythematosus in Thai population.	Systemic lupus erythematosus	487 Thai cases, 1,606 Thai controls	405 Thai cases, 1,590 Thai controls	6p21.33	SFTA2	rs3095152-A	0.03	6E-7		2.4584	[NR]	Illumina [421909] (imputed)	N
601	chr6_qbl_hap6	2193064	2193065	rs2253705	35215271	Almandil NB	2022-01-27	Pharmaceuticals (Basel)	Integration of Transcriptome and Exome Genotyping Identifies Significant Variants with Autism Spectrum Disorder.	Autism spectrum disorder	70 Arab ancestry cases, 132 Arab ancestry controls	NA	6p21.33	NA	rs2253705-A	0.125	4E-6		3.706	[2.086-6.583]	Illumina [243345]	N
601	chr6_qbl_hap6	2193398	2193399	rs2253718	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	Y_RNA	rs2253718-T	NR	3E-11		0.019062	[0.013-0.025] unit decrease	Affymetrix [319769] (imputed)	N
601	chr6_qbl_hap6	2193398	2193399	rs2253718	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	Y_RNA	rs2253718-T	NR	8E-10		0.0195334	[0.013-0.026] unit decrease	Affymetrix [323858] (imputed)	N
601	chr6_qbl_hap6	2193398	2193399	rs2253718	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	Y_RNA	rs2253718-T	NR	3E-10		0.0180687	[0.012-0.024] unit decrease	Affymetrix [319769] (imputed)	N
601	chr6_qbl_hap6	2193398	2193399	rs2253718	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	Y_RNA	rs2253718-T	NR	3E-8		0.0176831	[0.011-0.024] unit decrease	Affymetrix [127266] (imputed)	N
601	chr6_qbl_hap6	2193398	2193399	rs2253718	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	Y_RNA	rs2253718-T	NR	5E-11		0.0204362	[0.014-0.027] unit increase	Affymetrix [323123] (imputed)	N
601	chr6_qbl_hap6	2193398	2193399	rs2253718	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	Y_RNA	rs2253718-T	NR	3E-11		0.0191888	[0.014-0.025] unit decrease	Affymetrix [321169] (imputed)	N
601	chr6_qbl_hap6	2196416	2196416	rs539017487	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	6p21.33	NR	rs539017487-GT	0.365568	4E-26		0.0391332	[0.033-0.045] unit increase	Affymetrix [16577424] (imputed)	N
601	chr6_qbl_hap6	2197243	2197244	rs2844649	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	Y_RNA	rs2844649-A	NR	1E-10		0.0311282	[0.022-0.041] unit increase	Affymetrix [323123] (imputed)	N
601	chr6_qbl_hap6	2197243	2197244	rs2844649	32589924	Bi W	2020-06-23	Am J Hum Genet	A Fast and Accurate Method for Genome-Wide Time-to-Event Data Analysis and Its Application to UK Biobank.	Asthma (time to event)	25,240 British ancestry cases, 257,631 British ancestry controls	NA	6p21.33	SFTA2, DPCR149	rs2844649-?	NR	4E-8				NR [~ 24000000] (imputed)	N
601	chr6_qbl_hap6	2198284	2198285	rs3132571	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs3132571-A	0.623	3E-58				Affymetrix [10369434] (imputed)	N
601	chr6_qbl_hap6	2202379	2202380	rs2243739	33602968	Skuladottir AT	2021-02-18	Sci Rep	A meta-analysis uncovers the first sequence variant conferring risk of Bell's palsy.	Bell's palsy	4,714 European ancestry cases, 1,011,520 European ancestry controls	NA	6p21.33	DPCR1	rs2243739-C	0.3504	5E-6		0.90366	NR	Affymetrix, Illumina [30341632] (imputed)	N
601	chr6_qbl_hap6	2206429	2206430	rs3132581	23453885	Smoller JW	2013-02-27	Lancet	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NA	6p21.33	NR	rs3132581-G		2E-7	(Modelling analysis)			NR [1252901] (imputed)	N
601	chr6_qbl_hap6	2207523	2207524	rs3130781	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	DPCR1, HCG21	rs3130781-C	NR	3E-10		0.0233694	[0.016-0.031] unit increase	Affymetrix [323123] (imputed)	N
601	chr6_qbl_hap6	2207722	2207723	rs2517451	33649182	Penova M	2021-03-01	Proc Natl Acad Sci U S A	Genome wide association study of HTLV-1-associated myelopathy/tropical spastic paraparesis in the Japanese population.	HTLV-1 associated myelopathy	731 Japanese ancestry cases, 846 Japanese ancestry controls	NA	6p21.33		rs2517451-C	0.04	2E-9		2.69	[1.95-3.71]	Illumina [126394]	N
601	chr6_qbl_hap6	2212112	2212113	rs11969476	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	6p21.33	NR	rs11969476-?	NR	1E-10	(MIC-A)	1.10404	[0.77-1.44] unit increase	Illumina [11901634] (imputed)	N
601	chr6_qbl_hap6	2213095	2213096	rs3132580	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p21.33	DPCR1	rs3132580-A		3E-34		0.037	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
601	chr6_qbl_hap6	2213095	2213096	rs3132580	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	6p21.33	DPCR1	rs3132580-G	NR	2E-7		0.149993	[0.094-0.206] unit increase	Illumina [at least 950000] (imputed)	N
601	chr6_qbl_hap6	2213095	2213096	rs3132580	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.33	DPCR1	rs3132580-T	0.1379	3E-40		2.74	[NR]	Illumina [242824]	N
601	chr6_qbl_hap6	2215502	2215503	rs116020851	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p21.33	HCG21	rs116020851-C	0.971	3E-7		0.182	[0.11-0.25] unit increase	Affymetrix, Illumina [7374092] (imputed)	N
601	chr6_qbl_hap6	2216497	2216498	rs17189763	28468790	Agopian AJ	2017-06-01	Circ Cardiovasc Genet	Genome-Wide Association Studies and Meta-Analyses for Congenital Heart Defects.	Conotruncal heart defects (maternal effects)	up to 838 European ancestry trios	NA	6p21.33	GTF2H4, VARS2	rs17189763-?	NR	8E-7		1.041635	[1.024871-1.058673]	Illumina [at least 4756722] (imputed)	N
601	chr6_qbl_hap6	2216899	2216900	rs9368648	33766035	Wakim V	2021-03-25	BMC Med Genomics	New susceptibility alleles associated with severe coronary artery stenosis in the Lebanese population.	Severe coronary stenosis (family history of CAD interaction)	1,734 Middle Eastern ancestry cases, 757 Middle Eastern ancestry controls	NA	6p21.33	intergenic	rs9368648-T	NR	1E-9				Illumina [NR]	N
601	chr6_qbl_hap6	2216899	2216900	rs9368648	33766035	Wakim V	2021-03-25	BMC Med Genomics	New susceptibility alleles associated with severe coronary artery stenosis in the Lebanese population.	Severe coronary stenosis	1,734 Middle Eastern ancestry cases, 757 Middle Eastern ancestry controls	NA	6p21.33	intergenic	rs9368648-T	NR	3E-9				Illumina [NR]	N
601	chr6_qbl_hap6	2219489	2219490	rs3095156	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA	6p21.33	NR	rs3095156-?	NR	7E-6		0.0497	[0.028-0.071] unit decrease	Illumina [at least 560000] (imputed)	N
601	chr6_qbl_hap6	2224815	2224816	rs3131934	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p21.33	NR	rs3131934-?	NR	6E-8		5.421	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
601	chr6_qbl_hap6	2225194	2225195	rs138678612	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	6p21.33	NR	rs138678612-G	0.0217	1E-8		1.1235955	[1.08-1.16]	Affymetrix, Illumina [NR] (imputed)	N
601	chr6_qbl_hap6	2226765	2226766	rs3095089	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCG21	rs3095089-T	NR	3E-13		0.0287765	[0.021-0.036] unit decrease	Affymetrix [323858] (imputed)	N
601	chr6_qbl_hap6	2226765	2226766	rs3095089	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HCG21	rs3095089-T	NR	4E-12		0.0272715	[0.02-0.035] unit decrease	Affymetrix [127266] (imputed)	N
601	chr6_qbl_hap6	2226765	2226766	rs3095089	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p21.33	NR	rs3095089-?	NR	8E-13		0.0835	[0.061-0.106] unit decrease	Illumina [at least 560000] (imputed)	N
601	chr6_qbl_hap6	2226835	2226836	rs3131933	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.33		rs3131933-T	0.474	5E-17				Affymetrix [10369434] (imputed)	N
601	chr6_qbl_hap6	2226835	2226836	rs3131933	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.33	NR	rs3131933-T	0.808	7E-9	(conditional)	0.891	[0.85-0.93]	Illumina [11270530] (imputed)	N
602	chr6_qbl_hap6	2229631	2229632	rs3095086	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCG21	rs3095086-A	NR	1E-10		0.0225432	[0.016-0.029] unit decrease	Affymetrix [323858] (imputed)	N
602	chr6_qbl_hap6	2229631	2229632	rs3095086	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HCG21	rs3095086-A	NR	6E-10		0.0216316	[0.015-0.028] unit decrease	Affymetrix [127266] (imputed)	N
602	chr6_qbl_hap6	2230700	2230701	rs3131781	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p21.33	NR	rs3131781-G	0.1445	9E-9		0.0097	[0.0064-0.013] unit decrease	NR [7666894] (imputed)	N
602	chr6_qbl_hap6	2231851	2231852	rs9368649	30626913	Amare AT	2019-01-09	Mol Psychiatry	Bivariate genome-wide association analyses of the broad depression phenotype combined with major depressive disorder, bipolar disorder or schizophrenia reveal eight novel genetic loci for depression.	Broad depression or major depressive disorder (self-reported)	9,240 European ancestry broad depression cases, 9,519 European ancestry broad depression controls, 51,258 European ancestry individuals, 75,607 European ancestry self-reported major depressive disorder cases, 231,747 European ancestry self-reported major depressive disorder controls	322,580 individuals	6p21.33	MUC21	rs9368649-A	0.14	1E-8				Affymetrix, Illumina [at least 918921] (imputed)	N
602	chr6_qbl_hap6	2231851	2231852	rs9368649	23284291	Hancock DB	2012-12-20	PLoS Genet	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (smoking interaction)	50,047 European ancestry individuals	NA	6p21.33	MUC21, DPCR1	rs9368649-A	NR	1E-7	(FEV1/FVC, Pack-years)			NR [~ 2500000] (imputed)	N
602	chr6_qbl_hap6	2231851	2231852	rs9368649	23284291	Hancock DB	2012-12-20	PLoS Genet	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (smoking interaction)	50,047 European ancestry individuals	NA	6p21.33	MUC21, DPCR1	rs9368649-A	NR	1E-7	(FEV1/FVC, Ever-smoking)			NR [~ 2500000] (imputed)	N
602	chr6_qbl_hap6	2233355	2233356	rs2530710	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs2530710-?		4E-7		1.0416667	[1.03-1.06]	Illumina [7645193] (imputed)	N
602	chr6_qbl_hap6	2233355	2233356	rs2530710	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs2530710-?		1E-7		1.5151515	[1.3-1.75]	Illumina [7645193] (imputed)	N
602	chr6_qbl_hap6	2238592	2238593	rs34853064	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.33	NR	rs34853064-?	NR	6E-9				Affymetrix [~ 8270000] (imputed)	N
602	chr6_qbl_hap6	2240479	2240480	rs3094084	25827949	Kunz M	2015-05-04	Exp Dermatol	Genome-wide association study identifies new susceptibility loci for cutaneous lupus erythematosus.	Cutaneous lupus erythematosus	151 European ancestry cases, 1,288 European ancestry controls	219 European ancestry cases, 262 European ancestry controls	6p21.33	MUC21, TRIM39, RPP21	rs3094084-T	0.154	2E-11		2.3	[1.76-3.01]	Affymetrix [906600]	N
602	chr6_qbl_hap6	2243034	2243035	rs2844678	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	683 Turkish ancestry cases, 1,721 Turkish ancestry controls	NA	6p21.33	MUC21	rs2844678-?	NR	2E-42				Illumina [4495750] (imputed)	N
602	chr6_qbl_hap6	2243034	2243035	rs2844678	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	286 European ancestry cases, 2,652 European ancestry controls, 76 Han Chinese ancestry cases, 889 Han Chinese ancestry controls, 46 South Asian ancestry cases, 501 South Asian ancestry controls, 683 Turkish ancestry cases, 1,721 Turkish ancestry controls	NA	6p21.33	MUC21	rs2844678-?	NR	6E-47		2.71	NR	Illumina [up to 4495750] (imputed)	N
602	chr6_qbl_hap6	2248131	2248132	rs9262397	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Unilateral cleft lip and palate	205 Asian ancestry cases, 315 European ancestry cases, 692 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	6p21.33	NR	rs9262397-?	NR	1E-6		1.75	[1.6-1.91]	Illumina [539000] (imputed)	N
602	chr6_qbl_hap6	2252005	2252006	rs13211972	32276964	Shete S	2020-04-10	Cancer Res	A genome-wide association study identifies two novel susceptible regions for squamous cell carcinoma of the head and neck.	Oropharynx cancer	1,144 European ancestry cases, 4,493 European ancestry controls	2,328 European ancestry cases, 3,232 European ancestry controls	6p21.33	MUC21	rs13211972-A	0.05	1E-10		1.55	[1.36-1.77]	Illumina [7858089] (imputed)	N
602	chr6_qbl_hap6	2254127	2254128	rs150184132	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs150184132-C	0.961	1E-9				Affymetrix [10369434] (imputed)	N
602	chr6_qbl_hap6	2262130	2262131	rs1632862	26379185	Garcia-Etxebarria K	2015-09-17	PLoS One	No Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity.	Severe influenza A (H1N1) infection	49 European ancestry severe cases, 549 European ancestry population controls	NA	6p21.33	MUC21, MUC22	rs1632862-?	0.009311	2E-14		15.2	[6.123-37.73]	Affymetrix [547296]	N
602	chr6_qbl_hap6	2262311	2262312	rs9262437	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	683 Turkish ancestry cases, 1,721 Turkish ancestry controls	NA	6p21.33	MUC22	rs9262437-?	NR	5E-31	(conditional on rs2844678)			Illumina [4495750] (imputed)	N
602	chr6_qbl_hap6	2263064	2263065	rs6920820	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p21.33		rs6920820-?	NR	2E-9		0.0557301	[0.037-0.074] unit increase	Affymetrix [20259828] (imputed)	N
602	chr6_qbl_hap6	2266279	2266280	rs1634718	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	MUC22, MUC21	rs1634718-G	0.2540161	7E-11	(EA, Complement C4)	0.3291	[0.23-0.43] unit decrease	Affymetrix [509946]	N
602	chr6_qbl_hap6	2266591	2266592	rs1634719	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs1634719-A	0.697	1E-33				Affymetrix [10369434] (imputed)	N
602	chr6_qbl_hap6	2269648	2269649	rs28360974	23551011	Zhao L	2013-04-02	Ann Hum Genet	Genome-wide association study of pre-eclampsia detects novel maternal single nucleotide polymorphisms and copy-number variants in subsets of the Hyperglycemia and Adverse Pregnancy Outcome (HAPO) study cohort.	Preeclampsia	21 Afro-Caribbean cases, 1,010 Afro-Caribbean controls, 50 European ancestry cases, 1,202 European ancestry controls, 62 Hispanic cases, 658 Hispanic controls	NA	6p21.33	MUC21	rs28360974-?	NR	3E-6	(Afro-Caribbean)	10.13	[3.85-26.67]	Illumina [2485249] (imputed)	N
602	chr6_qbl_hap6	2269780	2269781	rs149405105	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MUC22	rs149405105-A	NR	2E-8		0.0337227	[0.022-0.045] unit increase	Affymetrix [319769] (imputed)	N
602	chr6_qbl_hap6	2269780	2269781	rs149405105	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	MUC22	rs149405105-A	NR	1E-8		0.0343316	[0.023-0.046] unit increase	Affymetrix [319769] (imputed)	N
602	chr6_qbl_hap6	2269780	2269781	rs149405105	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.33	MUC22	rs149405105-A	NR	3E-10		0.0380088	[0.026-0.05] unit increase	Affymetrix [321114] (imputed)	N
602	chr6_qbl_hap6	2269780	2269781	rs149405105	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	MUC22	rs149405105-A	NR	2E-9		0.0364062	[0.025-0.048] unit increase	Affymetrix [321169] (imputed)	N
602	chr6_qbl_hap6	2275520	2275522	rs71757905	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Chickenpox	107,769 European ancestry cases, 15,982 European ancestry controls	NA	6p21.33	NR	rs71757905-?	NR	9E-6		0.1098	[0.062-0.158] unit increase	Illumina [at least 560000] (imputed)	N
602	chr6_qbl_hap6	2275973	2275974	rs9394026	29031612	Hirata J	2017-10-12	J Invest Dermatol	Variants at HLA-A, HLA-C, and HLA-DQB1 Confer Risk of Psoriasis Vulgaris in Japanese.	Psoriasis vulgaris	282 Japanese ancestry cases, 426 Japanese ancestry controls	320 Japanese ancestry cases, 1,622 Japanese ancestry controls	6p21.33	HLA	rs9394026-G	0.197	7E-15		1.86	[1.59-2.18]	Illumina [6369185] (imputed)	N
602	chr6_qbl_hap6	2277896	2277897	rs3869097	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.33		rs3869097-T	0.32183300000000004	2E-7		1.0237832	[1.01-1.03]	Affymetrix, Illumina [9851866] (imputed)	N
602	chr6_qbl_hap6	2279258	2279259	rs1634726	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental longevity (mother's age at death)	52,776 middle-aged British individuals	NA	6p21.33	NR	rs1634726-?	NR	6E-6		0.032105	[0.018-0.046] unit increase	Affymetrix [9658292] (imputed)	N
602	chr6_qbl_hap6	2281406	2281407	rs1632870	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MUC22	rs1632870-T	NR	5E-8		0.0227309	[0.015-0.031] unit increase	Affymetrix [323123] (imputed)	N
602	chr6_qbl_hap6	2282429	2282430	rs139141104	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 142,336 Japanese ancestry controls	NA	6p21.33	MUC22	rs139141104-?	NR	1E-18		0.16637	[0.13-0.2] unit increase	Illumina [19707525] (imputed)	N
602	chr6_qbl_hap6	2283100	2283101	rs114115115	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.33		rs114115115-T	0.937	4E-16				Affymetrix [10369434] (imputed)	N
602	chr6_qbl_hap6	2283100	2283101	rs114115115	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cervical cancer	6,563 European ancestry cases, 410,350 European ancestry controls	NA	6p21.33		rs114115115-T	NR	6E-13		1.3463	NR	Affymetrix [7846216] (imputed)	N
602	chr6_qbl_hap6	2283427	2283428	rs9380210	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.33		rs9380210-A	0.72	1E-24				Affymetrix [10369434] (imputed)	N
602	chr6_qbl_hap6	2283427	2283428	rs9380210	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.33		rs9380210-A	0.72	7E-16				Affymetrix [10369434] (imputed)	N
602	chr6_qbl_hap6	2283427	2283428	rs9380210	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p21.33		rs9380210-A	0.72	5E-18				Affymetrix [10369434] (imputed)	N
602	chr6_qbl_hap6	2283463	2283464	rs1634729	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	118,886 East Asian ancestry individuals	NA	6p21.33		rs1634729-C	0.950931	3E-9		0.0534033	[0.036-0.071] unit decrease	Illumina [13474352] (imputed)	N
602	chr6_qbl_hap6	2283463	2283464	rs1634729	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MUC22	rs1634729-T	NR	3E-9		0.0248876	[0.017-0.033] unit decrease	Affymetrix [319769] (imputed)	N
602	chr6_qbl_hap6	2283463	2283464	rs1634729	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	MUC22	rs1634729-T	NR	6E-9		0.0242344	[0.016-0.032] unit decrease	Affymetrix [319769] (imputed)	N
602	chr6_qbl_hap6	2283489	2283490	rs116071718	31066027	Nicoletti P	2019-05-07	Clin Pharmacol Ther	Shared genetic risk factors across carbamazepine-induced hypersensitivity reactions.	Carbamazepine-induced serious cutaneous adverse reaction	43 European ancestry cases, 10,701 European ancestry controls	NA	6p21.33	MUC22	rs116071718-?	NR	2E-6	(conditioned on rs192543598)	3.99	[2.25-7.05]	Illumina [5271349] (imputed)	N
602	chr6_qbl_hap6	2284182	2284183	rs9394030	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	MUC22	rs9394030-A	NR	7E-9		0.0193287	[0.013-0.026] unit increase	Affymetrix [321169] (imputed)	N
602	chr6_qbl_hap6	2286156	2286157	rs1632865	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.33		rs1632865-T	0.584	6E-30				Affymetrix [10369434] (imputed)	N
602	chr6_qbl_hap6	2286953	2286954	rs2517554	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.33		rs2517554-C	0.386	7E-33				Affymetrix [10369434] (imputed)	N
602	chr6_qbl_hap6	2287267	2287268	rs62399429	33531474	Burton CL	2021-02-02	Transl Psychiatry	Genome-wide association study of pediatric obsessive-compulsive traits: shared genetic risk between traits and disorder.	Obsessive-compulsive traits	5,018 European ancestry children and adolescents	NA	6p21.33	MUC22	rs62399429-?	NR	5E-6		0.131	[0.074-0.188] unit increase	Illumina [7870334] (imputed)	N
602	chr6_qbl_hap6	2288343	2288344	rs566731348	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.33	NR	rs566731348-A	0.951	4E-12		1.889	[1.71-2.07]	Illumina [11270530] (imputed)	N
602	chr6_qbl_hap6	2291146	2291147	rs9262549	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MUC22	rs9262549-G	NR	2E-14		0.0228763	[0.017-0.029] unit increase	Affymetrix [321016] (imputed)	N
602	chr6_qbl_hap6	2291146	2291147	rs9262549	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MUC22	rs9262549-G	NR	4E-18		0.0282059	[0.022-0.035] unit increase	Affymetrix [323123] (imputed)	N
602	chr6_qbl_hap6	2291767	2291768	rs12110481	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MUC22	rs12110481-T	NR	2E-14		0.0246712	[0.018-0.031] unit decrease	Affymetrix [323123] (imputed)	N
602	chr6_qbl_hap6	2294876	2294877	rs3909113	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Sutterella)	1,068 Japanese ancestry individuals	NA	6p21.33	MUC22	rs3909113-G	0.29	3E-6		0.03	[0.017-0.043] unit decrease	Illumina [6380737] (imputed)	N
602	chr6_qbl_hap6	2294951	2294952	rs10947124	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	MUC22	rs10947124-T	NR	2E-9		0.0181143	[0.012-0.024] unit increase	Affymetrix [321169] (imputed)	N
602	chr6_qbl_hap6	2295134	2295135	rs59356242	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LRPAP1	5,365 Icelandic ancestry individuals	NA	6p21.33		rs59356242-A	0.0137	2E-11		0.546071	[0.39-0.7] unit increase	Illumina [7506463] (imputed)	N
602	chr6_qbl_hap6	2295468	2295469	rs6933349	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6p21.33		rs6933349-?	NR	1E-8		0.926525	[0.9-0.95]	NR [685523]	N
602	chr6_qbl_hap6	2295556	2295557	rs7768644	26151496	Chen PL	2015-07-07	Nat Commun	Genetic determinants of antithyroid drug-induced agranulocytosis by human leukocyte antigen genotyping and genome-wide association study.	Thionamide-induced agranulocytosis in Graves' disease	21 East Asian ancestry cases with agranulocytosis, 662 East Asian ancestry cases without agranulocytosis	21 East Asian ancestry cases with agranulocytosis, 546 East Asian ancestry cases without agranulocytosis	6p21.33	HLA	rs7768644-A	0.091	3E-13	(trend)	5.01	[3.1-8.1] (allelic)	Affymetrix [522980]	N
602	chr6_qbl_hap6	2295798	2295799	rs28732081	30037793	Haapasalo K	2018-09-21	Infect Immun	The Psoriasis Risk Allele <i>HLA-C*06:02</i> Shows Evidence of Association with Chronic or Recurrent Streptococcal Tonsillitis.	Tonsillitis	95 Finnish cases, 504 Finnish controls	NA	6p21.33	HLA-C, HLA-B	rs28732081-?		6E-6		4.7		Illumina [100000]	N
602	chr6_qbl_hap6	2295907	2295908	rs3869098	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs3869098-A	0.528	2E-32				Affymetrix [10369434] (imputed)	N
602	chr6_qbl_hap6	2295907	2295908	rs3869098	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MUC22	rs3869098-G	NR	6E-19		0.0251596	[0.02-0.031] unit increase	Affymetrix [319769] (imputed)	N
602	chr6_qbl_hap6	2295907	2295908	rs3869098	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MUC22	rs3869098-G	NR	4E-11		0.0207579	[0.015-0.027] unit increase	Affymetrix [323858] (imputed)	N
602	chr6_qbl_hap6	2295907	2295908	rs3869098	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	MUC22	rs3869098-G	NR	6E-18		0.0244083	[0.019-0.03] unit increase	Affymetrix [319769] (imputed)	N
602	chr6_qbl_hap6	2295907	2295908	rs3869098	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	MUC22	rs3869098-G	NR	6E-10		0.0194883	[0.013-0.026] unit increase	Affymetrix [127266] (imputed)	N
602	chr6_qbl_hap6	2295907	2295908	rs3869098	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MUC22	rs3869098-G	NR	1E-13		0.0208831	[0.015-0.026] unit decrease	Affymetrix [321016] (imputed)	N
602	chr6_qbl_hap6	2295907	2295908	rs3869098	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MUC22	rs3869098-G	NR	3E-16		0.0252592	[0.019-0.031] unit decrease	Affymetrix [323123] (imputed)	N
602	chr6_qbl_hap6	2295907	2295908	rs3869098	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	MUC22	rs3869098-G	NR	2E-15		0.0228249	[0.017-0.028] unit increase	Affymetrix [321169] (imputed)	N
602	chr6_qbl_hap6	2295982	2295983	rs4248153	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MUC22	rs4248153-G	NR	3E-11		0.0193381	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
602	chr6_qbl_hap6	2295982	2295983	rs4248153	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	MUC22	rs4248153-G	NR	2E-10		0.018489	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
602	chr6_qbl_hap6	2295982	2295983	rs4248153	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MUC22	rs4248153-G	NR	2E-15		0.0230515	[0.017-0.029] unit decrease	Affymetrix [321016] (imputed)	N
602	chr6_qbl_hap6	2296071	2296072	rs4248154	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.33		rs4248154-C	0.831	5E-19				Affymetrix [10369434] (imputed)	N
602	chr6_qbl_hap6	2296071	2296072	rs4248154	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Prostate cancer	10,792 European ancestry cases, 410,350 European ancestry controls	NA	6p21.33		rs4248154-T	NR	4E-8		1.1076651	NR	Affymetrix [7846216] (imputed)	N
602	chr6_qbl_hap6	2296071	2296072	rs4248154	21900946	Nakabayashi K	2011-09-08	J Hum Genet	Identification of independent risk loci for Graves' disease within the MHC in the Japanese population.	Graves' disease	1,119 Japanese ancestry cases, 2,718 Japanese ancestry controls	432 Japanese ancestry cases, 1,157 Japanese ancestry controls	6p21.33	MHC	rs4248154-C	0.54	1E-13		1.38	[1.27-1.50]	Perlegen [268068]	N
602	chr6_qbl_hap6	2296922	2296923	rs34416364	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6p21.33	NR	rs34416364-G	0.90442	8E-9		1.0608954	[1.04-1.08]	Affymetrix [15688218] (imputed)	N
602	chr6_qbl_hap6	2296922	2296923	rs34416364	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	6p21.33	NR	rs34416364-?	NR	4E-6		0.0711	[0.041-0.101] unit decrease	Illumina [at least 560000] (imputed)	N
602	chr6_qbl_hap6	2298885	2298886	rs11753208	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	MUC22	rs11753208-T	0.08492462	2E-13	(EA, MHC class I polypeptide-related sequence A)	0.5826	[0.43-0.74] unit decrease	Affymetrix [509946]	N
602	chr6_qbl_hap6	2298917	2298918	rs9262555	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	6p21.33	NR	rs9262555-?	NR	6E-13		7.194	NR z score decrease	Illumina [at least 830937] (imputed)	N
602	chr6_qbl_hap6	2298943	2298944	rs141397370	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LRPAP1	5,361 Icelandic ancestry individuals	NA	6p21.33		rs141397370-T	0.01079	3E-25		0.911048	[0.74-1.08] unit increase	Illumina [7506463] (imputed)	N
602	chr6_qbl_hap6	2299179	2299180	rs2844670	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MUC22	rs2844670-G	NR	2E-9		0.0247626	[0.017-0.033] unit increase	Affymetrix [323123] (imputed)	N
602	chr6_qbl_hap6	2300308	2300309	rs2844665	21801394	Genin E	2011-07-29	Orphanet J Rare Dis	Genome-wide association study of Stevens-Johnson Syndrome and Toxic Epidermal Necrolysis in Europe.	Drug-induced Stevens-Johnson syndrome or toxic epidermal necrolysis (SJS/TEN)	424 European ancestry cases, 1,881 European ancestry controls	NA	6p21.33	C6orf205	rs2844665-C	0.62	3E-7		1.54	[1.30-1.82]	Illumina [268914]	N
602	chr6_qbl_hap6	2300447	2300448	rs9262558	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Osteoporosis	8,520 European ancestry cases, 479,981 European ancestry controls, 9,794 East Asian ancestry cases, 168,932 East Asian ancestry controls	NA	6p21.33		rs9262558-T	NR	3E-8		0.1429	[0.092-0.194] unit decrease	Affymetrix, Illumina [25844994] (imputed)	N
602	chr6_qbl_hap6	2300577	2300578	rs115730672	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Treatment or medication use - insulin product (UKB data field 20003_1140883066)	4,469 European ancestry cases, 451,807 European ancestry controls	NA	6p21.33		rs115730672-C	0.005712	3E-11		1.05	[0.74-1.36] unit increase	NR [11842647] (imputed)	N
602	chr6_qbl_hap6	2306453	2306454	rs116353863	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	6p21.33	MHC	rs116353863-C	0.0165	9E-9		1.2	[1.13-1.27]	Affymetrix, Illumina [16900397] (imputed)	N
602	chr6_qbl_hap6	2308177	2308177	rs770655224	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.33	MUC22	rs770655224-G	0.8871	4E-7		0.0673	[0.041-0.093] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
602	chr6_qbl_hap6	2308196	2308197	rs12528596	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	6p21.33	Intergenic	rs12528596-T	NR	1E-7		0.0242361	[0.015-0.033] unit decrease	Illumina [13519193] (imputed)	N
602	chr6_qbl_hap6	2308450	2308451	rs10456389	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MUC22	rs10456389-T	NR	2E-9		0.0238148	[0.016-0.032] unit decrease	Affymetrix [321016] (imputed)	N
602	chr6_qbl_hap6	2309532	2309533	rs17190106	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)(bidirectional)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.33		rs17190106-G	NR	2E-10				Affymetrix [7846216] (imputed)	N
602	chr6_qbl_hap6	2312361	2312362	rs73727186	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	6p21.33	HCG22, MUC22, MUC21, C6orf15, PSORS1C1, CDSN, PSORS1C2, CCHCR1, DPCR1, TCF19, POU5F1, SFTA2, VARS2, PSORS1C3, GTF2H4, DDR1, HCG27, MIR4640	rs73727186-?		6E-6	(heterogeneous)	0.235	[0.13-0.34] unit increase	Illumina [1492601] (imputed)	N
602	chr6_qbl_hap6	2312361	2312362	rs73727186	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	6p21.33	HCG22, MUC22, MUC21, C6orf15, PSORS1C1, CDSN, PSORS1C2, CCHCR1, DPCR1, TCF19, POU5F1, SFTA2, VARS2, PSORS1C3, GTF2H4, DDR1, HCG27, MIR4640	rs73727186-?		5E-6	(dominant)	0.233	[-0.43732-0.90332] unit increase	Illumina [1492601] (imputed)	N
602	chr6_qbl_hap6	2313148	2313149	rs2251830	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	6p21.33	HCG22	rs2251830-A	0.36	5E-22		0.053	[0.041-0.065] unit increase	Affymetrix, Illumina [2704730] (imputed)	N
602	chr6_qbl_hap6	2314578	2314579	rs2517532	22493691	Eriksson N	2012-04-06	PLoS One	Novel associations for hypothyroidism include known autoimmune risk loci.	Hypothyroidism	3,736 European ancestry cases, 35,546 European ancestry controls	NA	6p21.33	HLA-C, LOC729792, HCG22, C6orf15, DHFRP2, HCP5, HLA-B	rs2517532-G	0.597	1E-8		1.16	[1.10-1.22]	Illumina [870065]	N
602	chr6_qbl_hap6	2314717	2314718	rs2523864	25813999	Jeong S	2015-04-01	Invest Ophthalmol Vis Sci	Identification of a Novel Mucin Gene HCG22 Associated With Steroid-Induced Ocular Hypertension.	Change in intraocular pressure in response to steroid treatment (triamcinolone acetonide)	64 European ancestry individuals	49 European ancestry individuals	6p21.33	HCG22, HLA-A, HLA-B, MUC22	rs2523864-T	0.412	5E-9				Illumina [1545328]	N
602	chr6_qbl_hap6	2316443	2316444	rs9262602	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p21.33	NR	rs9262602-G	0.132	2E-8	(IFNAR2_of_CD20p)			Illumina [5084123] (imputed)	N
602	chr6_qbl_hap6	2316700	2316701	rs77203474	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Antisaccade task score	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	6p21.33	HCG22	rs77203474-A	NR	3E-6		0.1378235	[0.079-0.197] unit decrease	Illumina [> 6200000] (imputed)	N
602	chr6_qbl_hap6	2317083	2317084	rs4713428	26584805	Dorajoo R	2015-11-19	Genes Nutr	A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.	Plasma omega-3 polyunsaturated fatty acid level (eicosapentaenoic acid)	717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls	NA	6p21.33	NR	rs4713428-G	0.294	7E-6		0.0854	[0.048-0.123] unit decrease	Illumina [up to 1980188] (imputed)	N
602	chr6_qbl_hap6	2318308	2318309	rs2523855	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCG22	rs2523855-C	NR	2E-10		0.0207136	[0.014-0.027] unit decrease	Affymetrix [323123] (imputed)	N
602	chr6_qbl_hap6	2318980	2318981	rs2905757	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCG22	rs2905757-T	NR	5E-12		0.0207441	[0.015-0.027] unit increase	Affymetrix [319769] (imputed)	N
602	chr6_qbl_hap6	2318980	2318981	rs2905757	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HCG22	rs2905757-T	NR	3E-11		0.0199898	[0.014-0.026] unit increase	Affymetrix [319769] (imputed)	N
602	chr6_qbl_hap6	2318980	2318981	rs2905757	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCG22	rs2905757-T	NR	3E-8		0.0166947	[0.011-0.023] unit decrease	Affymetrix [321016] (imputed)	N
602	chr6_qbl_hap6	2320384	2320385	rs9262631	26151496	Chen PL	2015-07-07	Nat Commun	Genetic determinants of antithyroid drug-induced agranulocytosis by human leukocyte antigen genotyping and genome-wide association study.	Thionamide-induced agranulocytosis in Graves' disease	21 East Asian ancestry cases with agranulocytosis, 662 East Asian ancestry cases without agranulocytosis	21 East Asian ancestry cases with agranulocytosis, 546 East Asian ancestry cases without agranulocytosis	6p21.33	HLA	rs9262631-A	0.063	6E-19	(trend)	7.09	[4.32-11.63] (allelic)	Affymetrix [522980]	N
602	chr6_qbl_hap6	2320591	2320592	rs9262632	21051598	Pereyra F	2010-11-04	Science	The major genetic determinants of HIV-1 control affect HLA class I peptide presentation.	HIV-1 control	516 European cases, 1,196 European controls, 341 African American cases, 892 African American controls, 117 Hispanic cases, 560 Hispanic controls	NA	6p21.33	intergenic	rs9262632-G	0.10	1E-8	(AA)	3.1	[NR]	Illumina [1384048] (imputed)	N
602	chr6_qbl_hap6	2322019	2322020	rs76541615	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	6p21.33	MHC-region	rs76541615-T	0.796	1E-17		1.08	[1.06-1.09]	Affymetrix, Illumina [11800000] (imputed)	N
602	chr6_qbl_hap6	2323117	2323118	rs2517521	32589924	Bi W	2020-06-23	Am J Hum Genet	A Fast and Accurate Method for Genome-Wide Time-to-Event Data Analysis and Its Application to UK Biobank.	Hyperlipidemia (time to event)	35,623 British ancestry cases, 247,248 British ancestry controls	NA	6p21.33	HCG22	rs2517521-?	NR	3E-8				NR [~ 24000000] (imputed)	N
602	chr6_qbl_hap6	2323117	2323118	rs2517521	32589924	Bi W	2020-06-23	Am J Hum Genet	A Fast and Accurate Method for Genome-Wide Time-to-Event Data Analysis and Its Application to UK Biobank.	Essential hypertension (time to event)	76,566 British ancestry cases, 206,305 British ancestry controls	NA	6p21.33	HCG2248	rs2517521-?	NR	4E-8				NR [~ 24000000] (imputed)	N
602	chr6_qbl_hap6	2323350	2323351	rs78725346	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.33	NR	rs78725346-A	0.01045	3E-8	(CKB)	0.03173	NR unit increase	Illumina [1671387] (imputed)	N
602	chr6_qbl_hap6	2325064	2325065	rs2523842	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCG22	rs2523842-A	NR	2E-9		0.0493584	[0.033-0.066] unit decrease	Affymetrix [321016] (imputed)	N
602	chr6_qbl_hap6	2325237	2325238	rs9262651	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HCG22	rs9262651-T	NR	3E-11		0.0220473	[0.016-0.029] unit increase	Affymetrix [321169] (imputed)	N
602	chr6_qbl_hap6	2325904	2325905	rs2517510	21738480	Nalls MA	2011-07-01	PLoS Genet	Multiple loci are associated with white blood cell phenotypes.	White blood cell count	19,509 European ancestry individuals	11,823 European ancestry individuals	6p21.33	PSORS1C1, MUC21, HCG22, C6orf15, CCHCR1, CDSN, PSORS1C2	rs2517510-T		4E-13	(WBC)	0.0129	[0.0094-0.0164] unit decrease	Affymetrix, Illumina [> 2400000] (imputed)	N
602	chr6_qbl_hap6	2329447	2329448	rs149917912	33841421	Li J	2021-03-25	Front Immunol	Variants at the MHC Region Associate With Susceptibility to <i>Clostridioides difficile</i> Infection: A Genome-Wide Association Study Using Comprehensive Electronic Health Records.	Clostridioides difficle infection	1,160 European ancestry cases, 14,144 European ancestry controls	NA	6p21.33	NR	rs149917912-C	0.0242	5E-6		1.67	[1.37-2]	Illumina [64973696] (imputed)	N
602	chr6_qbl_hap6	2330135	2330136	rs75056122	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.33	NR	rs75056122-T	0.01045	3E-8	(CKB)	0.03173	NR unit increase	Illumina [1671387] (imputed)	N
602	chr6_qbl_hap6	2330400	2330401	rs3094089	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCG22	rs3094089-C	NR	1E-9		0.021023	[0.014-0.028] unit decrease	Affymetrix [323858] (imputed)	N
602	chr6_qbl_hap6	2330400	2330401	rs3094089	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HCG22	rs3094089-C	NR	7E-9		0.0200851	[0.013-0.027] unit decrease	Affymetrix [127266] (imputed)	N
602	chr6_qbl_hap6	2330996	2330997	rs3132567	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HCG22	rs3132567-T	NR	3E-8		0.0202317	[0.013-0.027] unit decrease	Affymetrix [319769] (imputed)	N
602	chr6_qbl_hap6	2331357	2331358	rs192064582	32141793	Garman L	2020-03-06	Ocul Immunol Inflamm	Genome-Wide Association Study of Ocular Sarcoidosis Confirms HLA Associations and Implicates Barrier Function and Autoimmunity in African Americans.	Ocular sarcoidosis	260 African American cases, 1,551 African American controls	NA	6p21.33	NR	rs192064582-T	NR	8E-6		1.747	[1.37-2.23]	Illumina [13976150] (imputed)	N
602	chr6_qbl_hap6	2331377	2331378	rs184099286	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	QRS duration	3,274 African American individuals, 13,420 Hispanic/Latino individuals, 126 Asian ancestry individuals, 226 Native American ancestry individuals	NA	6p21.33	HCG22	rs184099286-?	NR	5E-9	(Hispanic/Latino)	1.17582	[0.78-1.57] unit decrease	Illumina [26566045] (imputed)	N
602	chr6_qbl_hap6	2336474	2336474	rs145214406	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.33	NR	rs145214406-CAA	0.012	1E-12		0.593265	[0.43-0.76] unit increase	Affymetrix [up to 8900000] (imputed)	N
602	chr6_qbl_hap6	2339748	2339749	rs2517481	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Growth differentiation factor-15 levels	21,758 European ancestry individuals	9,173 individuals	6p21.33		rs2517481-C	0.41	3E-9		0.0481	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
602	chr6_qbl_hap6	2342332	2342333	rs2517474	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small LDL	115,082 European ancestry individuals	NA	6p21.33		rs2517474-G	0.542926	2E-8		0.023198	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
602	chr6_qbl_hap6	2342332	2342333	rs2517474	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium LDL	115,082 European ancestry individuals	NA	6p21.33		rs2517474-G	0.542926	1E-9		0.0250618	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
602	chr6_qbl_hap6	2342332	2342333	rs2517474	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium LDL	115,082 European ancestry individuals	NA	6p21.33		rs2517474-G	0.542926	7E-9		0.0240182	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
602	chr6_qbl_hap6	2342332	2342333	rs2517474	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small LDL	115,082 European ancestry individuals	NA	6p21.33		rs2517474-G	0.542926	3E-8		0.0228734	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
602	chr6_qbl_hap6	2342332	2342333	rs2517474	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	6p21.33		rs2517474-G	0.542926	2E-9		0.0247017	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
602	chr6_qbl_hap6	2342332	2342333	rs2517474	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	RNU6-1133P	rs2517474-A	NR	8E-10		0.0173534	[0.012-0.023] unit increase	Affymetrix [319769] (imputed)	N
602	chr6_qbl_hap6	2342332	2342333	rs2517474	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	RNU6-1133P	rs2517474-A	NR	9E-9		0.0162462	[0.011-0.022] unit increase	Affymetrix [319769] (imputed)	N
602	chr6_qbl_hap6	2342332	2342333	rs2517474	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	RNU6-1133P	rs2517474-A	NR	7E-9		0.0163369	[0.011-0.022] unit decrease	Affymetrix [321016] (imputed)	N
602	chr6_qbl_hap6	2342332	2342333	rs2517474	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	RNU6-1133P	rs2517474-A	NR	3E-9		0.0169233	[0.011-0.023] unit increase	Affymetrix [321169] (imputed)	N
602	chr6_qbl_hap6	2344044	2344045	rs373537558	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	6p21.33	RNU6-1133P	rs373537558-A	0.9873	1E-12		0.0855	[0.062-0.109] unit increase	Affymetrix [18391927] (imputed)	N
602	chr6_qbl_hap6	2346173	2346174	rs9263475	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4 on CD39+ secreting CD4 regulatory T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs9263475-G	0.51353	1E-12		0.2076	[0.15-0.26] unit increase	Illumina [17954496] (imputed)	N
602	chr6_qbl_hap6	2346173	2346174	rs9263475	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.33	Intergenic	rs9263475-G	NR	6E-9	(women)	0.0308596	[0.02-0.041] unit decrease	Illumina [13520550] (imputed)	N
602	chr6_qbl_hap6	2346173	2346174	rs9263475	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.33	Intergenic	rs9263475-G	NR	2E-9		0.0221293	[0.015-0.029] unit decrease	Illumina [13520550] (imputed)	N
602	chr6_qbl_hap6	2348457	2348458	rs28732092	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p21.33	NR	rs28732092-T	0.0787	5E-7		0.011	[0.0067-0.0153] unit increase	NR [7666894] (imputed)	N
602	chr6_qbl_hap6	2349566	2349567	rs2535307	28132517	Xie W	2017-01-28	AIDS Res Hum Retroviruses	Genome-Wide Analyses Reveal Gene Influence on HIV Disease Progression and HIV-1C Acquisition in Southern Africa.	HIV progression (CD4 and viral load)	556 Motswana ancestry cases	NA	6p21.33	HCG22	rs2535307-C	0.48	4E-7				Illumina [NR]	N
602	chr6_qbl_hap6	2350206	2350207	rs2535305	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	RNU6-1133P	rs2535305-G	NR	8E-10		0.0178493	[0.012-0.024] unit increase	Affymetrix [321169] (imputed)	N
602	chr6_qbl_hap6	2350843	2350844	rs12527394	29534301	Nishida N	2018-03-13	Hepatology	Key HLA-DRB1-DQB1 haplotypes and role of the BTNL2 gene for response to a hepatitis B vaccine.	Response to hepatitis B vaccine	107 Japanese ancestry low responder individuals, 351 Japanese ancestry intermediate responder individuals, 735 Japanese ancestry high responder individuals	NA	6p21.33	C6orf15	rs12527394-?		5E-8		0.174	unit decrease	Affymetrix [427664]	N
602	chr6_qbl_hap6	2353987	2353988	rs4947296	31050781	Zhao SX	2019-05-03	JAMA Netw Open	Assessment of Molecular Subtypes in Thyrotoxic Periodic Paralysis and Graves Disease Among Chinese Han Adults: A Population-Based Genome-Wide Association Study.	Thyrotoxic hypokalemic periodic paralysis and Graves disease	171 Han Chinese ancestry cases, 2,160 Han Chinese ancestry controls	362 Han Chinese ancestry cases, 1,089 Han Chinese ancestry controls	6p21.33	C6orf15	rs4947296-?	0.14	3E-22		2.06	[1.77-2.39]	Illumina [2752055] (imputed)	N
602	chr6_qbl_hap6	2353987	2353988	rs4947296	23001997	Hou S	2012-12-06	Arthritis Rheum	Identification of a susceptibility locus in STAT4 for Behcet's disease in Han Chinese in a genome-wide association study.	Behcet's disease	147 Han Chinese ancestry cases, 951 Han Chinese ancestry controls	554 Han Chinese ancestry cases, 1,159 Han Chinese ancestry controls	6p21.33	HCG22	rs4947296-?	NR	1E-11		2.57	[1.96-3.37]	Affymetrix [661736]	N
602	chr6_qbl_hap6	2353987	2353988	rs4947296	21841780	Chu X	2011-08-14	Nat Genet	A genome-wide association study identifies two new risk loci for Graves' disease.	Graves' disease	1,468 Chinese ancestry cases, 1,490 Chinese ancestry controls	3,994 Chinese ancestry cases, 3,510 Chinese ancestry controls	6p21.33	MUC21, C6orf15	rs4947296-C	0.14	4E-51		1.77	[1.65-1.91]	Illumina [486049]	N
602	chr6_qbl_hap6	2354149	2354150	rs3130544	23263863	Li J	2012-12-20	Hum Mol Genet	GWAS of blood cell traits identifies novel associated loci and epistatic interactions in Caucasian and African-American children.	Hematology traits	7,943 African American children, 6,234 European ancestry children	NA	6p21.33	PSORS1C1, MUC21, HCG22, C6orf15, CCHCR1, CDSN, PSORS1C2	rs3130544-A	NR	5E-7	(WBC)	0.0189	[0.011-0.026] unit decrease	Illumina [544917]	N
602	chr6_qbl_hap6	2354149	2354150	rs3130544	23055271	Gregersen PK	2012-07-16	Ann Neurol	Risk for myasthenia gravis maps to a (151) Pro->Ala change in TNIP1 and to human leukocyte antigen-B*08.	Myasthenia gravis	400 European ancestry cases, 5,505 European ancestry controls	249 European ancestry cases, 3,415 European ancestry controls	6p21.33	NR	rs3130544-A	0.13	2E-90		5.64	[4.77-6.67]	Illumina [274256]	N
602	chr6_qbl_hap6	2354149	2354150	rs3130544	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.33	intergenic	rs3130544-A	0.1238	9E-58		3.34	[NR]	Illumina [242824]	N
602	chr6_qbl_hap6	2355271	2355272	rs2535298	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p21.33	NR	rs2535298-?	NR	1E-6		0.0761	[0.046-0.107] unit increase	Illumina [at least 560000] (imputed)	N
602	chr6_qbl_hap6	2356028	2356029	rs2535296	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p21.33	NR	rs2535296-?	NR	3E-12		0.0858	[0.062-0.11] unit decrease	Illumina [at least 560000] (imputed)	N
602	chr6_qbl_hap6	2357377	2357378	rs3094087	33227023	Wang Y	2020-11-23	PLoS Genet	Genome-wide association study identifies 16 genomic regions associated with circulating cytokines at birth.	IgA levels	8,318 European ancestry individuals	NA	6p21.33	HLA	rs3094087-T	0.15	2E-10		0.1	[0.080-0.120] unit increase	Illumina [~ 9000000] (imputed)	N
602	chr6_qbl_hap6	2359248	2359249	rs3130967	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	RNU6-1133P	rs3130967-T	NR	2E-9		0.0334393	[0.023-0.044] unit increase	Affymetrix [323123] (imputed)	N
603	chr6_qbl_hap6	2360874	2360875	rs146508039	33841421	Li J	2021-03-25	Front Immunol	Variants at the MHC Region Associate With Susceptibility to <i>Clostridioides difficile</i> Infection: A Genome-Wide Association Study Using Comprehensive Electronic Health Records.	Clostridioides difficle infection in antibiotics-users	587 European ancestry cases, 3,166 European ancestry controls	NA	6p21.33	NR	rs146508039-T	0.025	5E-7		2.24	[1.7-2.88]	Illumina [64973696] (imputed)	N
603	chr6_qbl_hap6	2360908	2360909	rs3130968	34601942	van Zuydam NR	2021-10-04	Circ Genom Precis Med	Genome-Wide Association Study of Peripheral Artery Disease.	Peripheral artery disease	12,086 European ancestry cases, 449,548 European ancestry controls	31,307 cases, 211,753 controls, 3,164 East Asian ancestry cases, 20,134 East Asian ancestry controls	6p21.33		rs3130968-T	0.19	3E-12		1.07	[1.05-1.09]	Affymetrix, Illumina [NR] (imputed)	N
603	chr6_qbl_hap6	2360908	2360909	rs3130968	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	C6orf15	rs3130968-T	NR	4E-9		0.0219861	[0.015-0.029] unit decrease	Affymetrix [319769] (imputed)	N
603	chr6_qbl_hap6	2360908	2360909	rs3130968	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	C6orf15	rs3130968-T	NR	4E-8		0.0204516	[0.013-0.028] unit decrease	Affymetrix [319769] (imputed)	N
603	chr6_qbl_hap6	2360908	2360909	rs3130968	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	C6orf15	rs3130968-T	NR	7E-9		0.0218317	[0.014-0.029] unit decrease	Affymetrix [321169] (imputed)	N
603	chr6_qbl_hap6	2360908	2360909	rs3130968	31285632	Klarin D	2019-07-08	Nat Med	Genome-wide association study of peripheral artery disease in the Million Veteran Program.	Peripheral artery disease	24,009 European ancestry cases, 150,983 European ancestry controls, 5,373 African ancestry cases, 42,485 African ancestry controls, 1,925 Hispanic cases, 18,285 Hispanic controls	5,117 European ancestry cases, 389,291 European ancestry controls	6p21.33	HLA-B	rs3130968-T	0.1371	3E-10		1.07	[1.05-1.10]	Affymetrix [at least 20323458] (imputed)	N
603	chr6_qbl_hap6	2360954	2360955	rs149396823	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	6p21.33		rs149396823-A	0.00992199999999999	1E-11		0.07646505	[0.054-0.099] unit increase	Affymetrix [93095623] (imputed)	N
603	chr6_qbl_hap6	2362477	2362478	rs144846110	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p21.33	C6orf15	rs144846110-G	NR	1E-10		0.0272233	[0.019-0.036] unit decrease	Affymetrix [323858] (imputed)	N
603	chr6_qbl_hap6	2363104	2363105	rs9263523	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Prostate cancer	11,599 European ancestry cases, 199,628 European ancestry controls, 5,672 East Asian ancestry cases, 84,660 East Asian ancestry controls	NA	6p21.33		rs9263523-T	NR	1E-10		0.0949	[0.066-0.124] unit decrease	Affymetrix, Illumina [25775424] (imputed)	N
603	chr6_qbl_hap6	2363390	2363391	rs4371876	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4 on HLA DR+ CD4+ T cell	3,060 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs4371876-A	0.51058	2E-10		0.1831	[0.13-0.24] unit increase	Illumina [18012714] (imputed)	N
603	chr6_qbl_hap6	2365354	2365355	rs9263567	21844884	Wheeler HE	2011-08-16	Pharmacogenomics J	Genome-wide meta-analysis identifies variants associated with platinating agent susceptibility across populations.	Response to platinum-based chemotherapy (cisplatin)	176 Sub-Saharan African ancestry lymphoblastoid cell lines, 83 African ancestry lymphoblastoid cell lines, 175 East Asian ancestry lymphoblastoid cell lines, 174 European ancestry lymphoblastoid cell lines	NA	6p21.33	intergenic	rs9263567-?		5E-6				NR [~ 3000000] (imputed)	N
603	chr6_qbl_hap6	2365354	2365355	rs9263567	21844884	Wheeler HE	2011-08-16	Pharmacogenomics J	Genome-wide meta-analysis identifies variants associated with platinating agent susceptibility across populations.	Response to platinum-based chemotherapy (carboplatin)	176 Sub-Saharan African ancestry lymphoblastoid cell lines, 83 African ancestry lymphoblastoid cell lines, 175 East Asian ancestry lymphoblastoid cell lines, 174 European ancestry lymphoblastoid cell lines	NA	6p21.33	intergenic	rs9263567-?		2E-6				NR [~ 3000000] (imputed)	N
603	chr6_qbl_hap6	2368924	2368925	rs9263622	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.33		rs9263622-T	0.603	5E-29				Affymetrix [10369434] (imputed)	N
603	chr6_qbl_hap6	2369856	2369857	rs6457327	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Prostate cancer	7,438 White British ancestry cases, 118,206 White British ancestry controls	NA	6p21.33		rs6457327-?	NR	5E-8		1.1003	[1.07-1.13]	NR [680312]	N
603	chr6_qbl_hap6	2369856	2369857	rs6457327	20639881	Conde L	2010-07-18	Nat Genet	Genome-wide association study of follicular lymphoma identifies a risk locus at 6p21.32.	Follicular lymphoma	681 European ancestry cases, 750 European ancestry controls	up to 3,164 European ancestry cases, 6,208 European ancestry controls	6p21.33	C6orf15	rs6457327-C	0.56	7E-6	(FL)	1.47	[1.27-1.72]	Illumina [312768]	N
603	chr6_qbl_hap6	2369856	2369857	rs6457327	19620980	Skibola CF	2009-07-20	Nat Genet	Genetic variants at 6p21.33 are associated with susceptibility to follicular lymphoma.	Follicular lymphoma	189 European ancestry cases, 592 European controls	456 European ancestry cases, 2,785 European ancestry controls	6p21.33	STG, PSORS1	rs6457327-C	0.62	5E-11		1.69	[1.43-2.00]	Illumina [~ 500000]	N
603	chr6_qbl_hap6	2373056	2373057	rs2517473	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	6p21.33	C6orf15	rs2517473-C	0.92125	2E-8		0.0215969	[0.014-0.029] unit decrease	Affymetrix [NR] (imputed)	N
603	chr6_qbl_hap6	2374432	2374433	rs1265057	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p21.33	C6orf15	rs1265057-C	0.491	2E-6		0.053	[0.031-0.075] unit decrease	Affymetrix, Illumina [7374092] (imputed)	N
603	chr6_qbl_hap6	2374626	2374627	rs3132556	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	6p21.33	NR	rs3132556-A	0.150099	4E-8		0.048321012	[0.031-0.066] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
603	chr6_qbl_hap6	2374626	2374627	rs3132556	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	6p21.33	NR	rs3132556-T	0.184341545793891	8E-15		0.012361368	[0.0092-0.0155] unit decrease	NR [NR]	N
603	chr6_qbl_hap6	2374626	2374627	rs3132556	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	6p21.33	NR	rs3132556-T	0.184341545793891	2E-14		0.015899843	[0.012-0.02] unit decrease	NR [NR]	N
603	chr6_qbl_hap6	2374626	2374627	rs3132556	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	6p21.33	NR	rs3132556-T	0.184341545793891	9E-15		0.010477979	[0.0078-0.0131] unit decrease	NR [NR]	N
603	chr6_qbl_hap6	2374626	2374627	rs3132556	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.33	ATP6V1G2, ATP6V1G2-DDX39B, C6orf15, CCHCR1, CDSN, DDR1, DDX39B, DPCR1, FLOT1, GTF2H4, HCG22, HCG26, HCG27, HCP5, HLA-B, HLA-C, IER3, LINC00243, LTA, MCCD1, MICA, MICB, MIR4640, MIR6891, MUC21, MUC22, NFKBIL1, POU5F1, PSORS1C1, PSORS1C2, PSORS1C3, SFTA2, SNORD117, SNORD84, TCF19, TNF, TUBB, VARS2	rs3132556-A		1E-9		1.08	[1.05-1.11]	Affymetrix, Illumina [NR]	N
603	chr6_qbl_hap6	2375461	2375462	rs2233980	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	6p21.33	NR	rs2233980-A	0.130672432110858	1E-18		0.01198786	[0.0093-0.0147] unit decrease	NR [NR]	N
603	chr6_qbl_hap6	2375833	2375834	rs2233974	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	C6orf15	rs2233974-G	NR	3E-9		0.020957	[0.014-0.028] unit increase	Affymetrix [321016] (imputed)	N
603	chr6_qbl_hap6	2375833	2375834	rs2233974	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p21.33	C6orf15	rs2233974-C	0.377	8E-27				Illumina [118177]	N
603	chr6_qbl_hap6	2376521	2376522	rs1265051	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	C6orf15	rs1265051-G	NR	2E-8		0.0200002	[0.013-0.027] unit increase	Affymetrix [319769] (imputed)	N
603	chr6_qbl_hap6	2376521	2376522	rs1265051	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	C6orf15	rs1265051-G	NR	4E-8		0.0193546	[0.012-0.026] unit increase	Affymetrix [319769] (imputed)	N
603	chr6_qbl_hap6	2377022	2377023	rs2233956	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	C6orf15	rs2233956-C	NR	9E-13		0.0241887	[0.018-0.031] unit decrease	Affymetrix [319769] (imputed)	N
603	chr6_qbl_hap6	2377022	2377023	rs2233956	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	C6orf15	rs2233956-C	NR	3E-18		0.0327829	[0.025-0.04] unit decrease	Affymetrix [323858] (imputed)	N
603	chr6_qbl_hap6	2377022	2377023	rs2233956	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	C6orf15	rs2233956-C	NR	8E-12		0.0231628	[0.017-0.03] unit decrease	Affymetrix [319769] (imputed)	N
603	chr6_qbl_hap6	2377022	2377023	rs2233956	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	C6orf15	rs2233956-C	NR	2E-17		0.0319326	[0.025-0.039] unit decrease	Affymetrix [127266] (imputed)	N
603	chr6_qbl_hap6	2377022	2377023	rs2233956	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	C6orf15	rs2233956-C	NR	9E-10		0.0207055	[0.014-0.027] unit increase	Affymetrix [321016] (imputed)	N
603	chr6_qbl_hap6	2377022	2377023	rs2233956	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	C6orf15	rs2233956-C	NR	6E-9		0.0214605	[0.014-0.029] unit increase	Affymetrix [323123] (imputed)	N
603	chr6_qbl_hap6	2377022	2377023	rs2233956	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	C6orf15	rs2233956-C	NR	3E-9		0.0203515	[0.014-0.027] unit decrease	Affymetrix [321169] (imputed)	N
603	chr6_qbl_hap6	2377022	2377023	rs2233956	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in ever smokers	23,223 European ancestry cases,  16,964 European ancestry controls	NA	6p21.33	C6orf15	rs2233956-C	0.167124691	5E-16		1.1730286	[1.128692308-1.219106364]	Illumina [10439017] (imputed)	N
603	chr6_qbl_hap6	2377022	2377023	rs2233956	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.33	intergenic	rs2233956-G	0.1813	6E-48		2.77	[NR]	Illumina [242824]	N
603	chr6_qbl_hap6	2377068	2377069	rs2233955	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	C6orf15	rs2233955-A	NR	1E-9		0.0215169	[0.015-0.028] unit increase	Affymetrix [319769] (imputed)	N
603	chr6_qbl_hap6	2377068	2377069	rs2233955	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	C6orf15	rs2233955-A	NR	4E-9		0.0208588	[0.014-0.028] unit increase	Affymetrix [319769] (imputed)	N
603	chr6_qbl_hap6	2377226	2377227	rs1265048	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	C6orf15	rs1265048-C	NR	1E-8		0.0172428	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
603	chr6_qbl_hap6	2377226	2377227	rs1265048	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	C6orf15	rs1265048-C	NR	2E-9		0.0182055	[0.012-0.024] unit decrease	Affymetrix [321016] (imputed)	N
603	chr6_qbl_hap6	2377226	2377227	rs1265048	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	C6orf15	rs1265048-C	NR	4E-10		0.0206963	[0.014-0.027] unit decrease	Affymetrix [323123] (imputed)	N
603	chr6_qbl_hap6	2377226	2377227	rs1265048	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	C6orf15	rs1265048-C	NR	4E-8		0.0167663	[0.011-0.023] unit increase	Affymetrix [321169] (imputed)	N
603	chr6_qbl_hap6	2377226	2377227	rs1265048	32421744	Gzara C	2020-05-18	PLoS Pathog	Family-based genome-wide association study of leprosy in Vietnam.	Leprosy	1,749 Vietnamese ancestry cases	1,181 Vietnamese ancestry cases, 688 Vietnamese ancestry controls	6p21.33	C6orf15	rs1265048-T	0.51	6E-11		1.4492754	[1.25-1.72]	Illumina [5607170] (imputed)	N
603	chr6_qbl_hap6	2377226	2377227	rs1265048	30013184	Waage J	2018-07-16	Nat Genet	Genome-wide association and HLA fine-mapping studies identify risk loci and genetic pathways underlying allergic rhinitis.	Allergic sensitization	8,040 European ancestry cases, 16,441 European ancestry controls	NA	6p21.33	C5orf15, PSORS1C1	rs1265048-T	0.64	1E-7		1.1235955	[1.08-1.18]	Affymetrix, Illumina [16531985] (imputed)	N
603	chr6_qbl_hap6	2377251	2377252	rs3094222	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Waist-hip ratio and HDL-C (pairwise)	402,477 European ancestry individuals, 11,333 East Asian, South Asian, Hispanic and African American ancestry individuals	NA	6p21.33	C6orf15-PSORS1C1	rs3094222-A	0.9135	1E-11				Affymetrix, Illumina [2331072] (imputed)	N
603	chr6_qbl_hap6	2377251	2377252	rs3094222	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	6p21.33	C6orf15, PSORS1C1	rs3094222-G	0.108346341	9E-17		1.1642892	[1.123294727-1.206779842]	Illumina [10439017] (imputed)	N
603	chr6_qbl_hap6	2377281	2377282	rs1265047	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	Intergenic	rs1265047-G	0.3485915	2E-17	(EA, MHC class I polypeptide-related sequence A)	0.3847	[0.3-0.47] unit increase	Affymetrix [509946]	N
603	chr6_qbl_hap6	2377757	2377758	rs3130976	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	PSORS1C1	rs3130976-C	NR	1E-8		0.0197052	[0.013-0.026] unit decrease	Affymetrix [323858] (imputed)	N
603	chr6_qbl_hap6	2377757	2377758	rs3130976	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	PSORS1C1	rs3130976-C	NR	3E-8		0.0190506	[0.012-0.026] unit decrease	Affymetrix [127266] (imputed)	N
603	chr6_qbl_hap6	2377757	2377758	rs3130976	32814899	Meyer HV	2020-08-19	Nature	Genetic and functional insights into the fractal structure of the heart.	Myocardial fractal dimension (slice 8)	18,096 European individuals		6p21.33	NR	rs3130976-C	0.28549	3E-8		0.064606	[0.042-0.087] unit increase	Affymetrix [14134301] (imputed)	N
603	chr6_qbl_hap6	2377757	2377758	rs3130976	32814899	Meyer HV	2020-08-19	Nature	Genetic and functional insights into the fractal structure of the heart.	Myocardial fractal dimension (slice 7)	18,096 European individuals		6p21.33	NR	rs3130976-C	0.28549	4E-7		0.059143	[0.036-0.082] unit increase	Affymetrix [14134301] (imputed)	N
603	chr6_qbl_hap6	2377757	2377758	rs3130976	32814899	Meyer HV	2020-08-19	Nature	Genetic and functional insights into the fractal structure of the heart.	Myocardial fractal dimension (slice 6)	18,096 European individuals		6p21.33	NR	rs3130976-C	0.28549	4E-8		0.064023	[0.041-0.087] unit increase	Affymetrix [14134301] (imputed)	N
603	chr6_qbl_hap6	2377757	2377758	rs3130976	32814899	Meyer HV	2020-08-19	Nature	Genetic and functional insights into the fractal structure of the heart.	Myocardial fractal dimension (slice 5)	18,096 European individuals		6p21.33	NR	rs3130976-C	0.28549	1E-8		0.066545	[0.044-0.089] unit increase	Affymetrix [14134301] (imputed)	N
603	chr6_qbl_hap6	2377757	2377758	rs3130976	32814899	Meyer HV	2020-08-19	Nature	Genetic and functional insights into the fractal structure of the heart.	Myocardial fractal dimension (slice 4)	18,096 European individuals		6p21.33	NR	rs3130976-C	0.28549	2E-6		0.055881	[0.033-0.079] unit increase	Affymetrix [14134301] (imputed)	N
603	chr6_qbl_hap6	2377757	2377758	rs3130976	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	6p21.33	C6orf15, PSORS1C1	rs3130976-T	NR	5E-8		0.124739	[0.08-0.169] unit increase	Illumina [at least 950000] (imputed)	N
603	chr6_qbl_hap6	2378014	2378015	rs3130979	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	6p21.33		rs3130979-G	0.655198	1E-8		0.0238702	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
603	chr6_qbl_hap6	2378221	2378222	rs3130980	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PSORS1C1	rs3130980-T	NR	1E-8		0.0171125	[0.011-0.023] unit decrease	Affymetrix [321016] (imputed)	N
603	chr6_qbl_hap6	2378221	2378222	rs3130980	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	PSORS1C1	rs3130980-T	NR	2E-9		0.01962	[0.013-0.026] unit decrease	Affymetrix [323123] (imputed)	N
603	chr6_qbl_hap6	2379103	2379104	rs3094219	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PSORS1C1, CDSN	rs3094219-A	NR	1E-8		0.0159832	[0.01-0.022] unit decrease	Affymetrix [321016] (imputed)	N
603	chr6_qbl_hap6	2380757	2380760	rs34182778	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p21.33	CDSN	rs34182778-G		5E-44		0.035	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
603	chr6_qbl_hap6	2381196	2381197	rs3094214	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	PSORS1C1, CDSN	rs3094214-A	NR	8E-11		0.0199471	[0.014-0.026] unit decrease	Affymetrix [323123] (imputed)	N
603	chr6_qbl_hap6	2381584	2381585	rs3094212	20139978	Kamatani Y	2010-02-07	Nat Genet	Genome-wide association study of hematological and biochemical traits in a Japanese population.	White blood cell count	14,677 Japanese ancestry individuals	NA	6p21.33	PSORS1C1, CDSN	rs3094212-C	0.35	7E-9		0.07	[0.046-0.094] unit increase	Illumina [561583]	N
603	chr6_qbl_hap6	2381638	2381639	rs3819686	29534301	Nishida N	2018-03-13	Hepatology	Key HLA-DRB1-DQB1 haplotypes and role of the BTNL2 gene for response to a hepatitis B vaccine.	Response to hepatitis B vaccine	107 Japanese ancestry low responder individuals, 351 Japanese ancestry intermediate responder individuals, 735 Japanese ancestry high responder individuals	NA	6p21.33	PSORS1C1	rs3819686-?		7E-6		0.15	unit decrease	Affymetrix [427664]	N
603	chr6_qbl_hap6	2382238	2382239	rs78479381	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.33		rs78479381-T	0.109186	3E-20		1.0718842	[1.05-1.09]	Affymetrix, Illumina [9851866] (imputed)	N
603	chr6_qbl_hap6	2383174	2383175	rs3130991	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	C6orf15, PSORS1C1, CDSN	rs3130991-T	0.3442211	4E-15	(EA, MHC class I polypeptide-related sequence B)	0.3612	[0.27-0.45] unit increase	Affymetrix [509946]	N
603	chr6_qbl_hap6	2383965	2383966	rs3095318	27611488	Almoguera B	2016-09-09	Am J Respir Crit Care Med	Identification of Four Novel Loci in Asthma in European American and African American Populations.	Adult asthma	337 African American allergic asthma cases, 321 African American non-allergic asthma cases, 1,367 African American controls, 466 European American allergic asthma cases, 626 European American non-allergic asthma cases, 7,878 European American controls	NA	6p21.33	PSORS1C1	rs3095318-?	NR	7E-8	(EA)			Affymetrix, Illumina [NR] (imputed)	N
603	chr6_qbl_hap6	2383965	2383966	rs3095318	27611488	Almoguera B	2016-09-09	Am J Respir Crit Care Med	Identification of Four Novel Loci in Asthma in European American and African American Populations.	Adult asthma	337 African American allergic asthma cases, 321 African American non-allergic asthma cases, 1,367 African American controls, 466 European American allergic asthma cases, 626 European American non-allergic asthma cases, 7,878 European American controls	NA	6p21.33	PSORS1C1	rs3095318-?	NR	2E-11		0.351	[0.25-0.45] unit increase	Affymetrix, Illumina [NR] (imputed)	N
603	chr6_qbl_hap6	2384052	2384053	rs2302398	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	152,447 East Asian ancestry individuals	NA	6p21.33		rs2302398-G	0.773065	4E-13		0.026479	[0.019-0.034] unit decrease	Illumina [13478948] (imputed)	N
603	chr6_qbl_hap6	2384052	2384053	rs2302398	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	153,015 East Asian ancestry individuals	NA	6p21.33		rs2302398-G	0.773485	9E-11		0.0240481	[0.017-0.031] unit decrease	Illumina [13478961] (imputed)	N
603	chr6_qbl_hap6	2384801	2384802	rs6927322	26503584	Litchfield K	2015-10-27	Nat Commun	Identification of four new susceptibility loci for testicular germ cell tumour.	Testicular germ cell tumor	986 European ancestry cases, 4,946 European ancestry controls	4,009 cases, 4,066 controls	6p21.33	NR	rs6927322-T	0.04	6E-6		1.24	[1.08-1.43]	Illumina [~ 8900000] (imputed)	N
603	chr6_qbl_hap6	2385529	2385530	rs4410768	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p21.33	CDSN, PSORS1C1	rs4410768-G	0.03	2E-10	(Turkish)	3.52	[2.34-5.30]	Illumina [up to 547389]	N
603	chr6_qbl_hap6	2387788	2387789	rs9263688	26151496	Chen PL	2015-07-07	Nat Commun	Genetic determinants of antithyroid drug-induced agranulocytosis by human leukocyte antigen genotyping and genome-wide association study.	Thionamide-induced agranulocytosis in Graves' disease	21 East Asian ancestry cases with agranulocytosis, 662 East Asian ancestry cases without agranulocytosis	21 East Asian ancestry cases with agranulocytosis, 546 East Asian ancestry cases without agranulocytosis	6p21.33	HLA	rs9263688-G	0.053	5E-21	(trend)	8.06	[4.86-13.37] (allelic)	Affymetrix [522980]	N
603	chr6_qbl_hap6	2387813	2387814	rs3094204	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PSORS1C1	rs3094204-A	NR	2E-9		0.0169554	[0.011-0.022] unit decrease	Affymetrix [319769] (imputed)	N
603	chr6_qbl_hap6	2387813	2387814	rs3094204	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	PSORS1C1	rs3094204-A	NR	6E-9		0.0163675	[0.011-0.022] unit decrease	Affymetrix [319769] (imputed)	N
603	chr6_qbl_hap6	2387813	2387814	rs3094204	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	PSORS1C1	rs3094204-A	NR	3E-8		0.0157756	[0.01-0.021] unit decrease	Affymetrix [321169] (imputed)	N
603	chr6_qbl_hap6	2387870	2387871	rs3095307	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	PSORS1C1	rs3095307-C	NR	3E-9		0.0181221	[0.012-0.024] unit decrease	Affymetrix [323123] (imputed)	N
603	chr6_qbl_hap6	2388589	2388590	rs3095304	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PSORS1C1	rs3095304-T	NR	8E-9		0.0205624	[0.014-0.028] unit decrease	Affymetrix [319769] (imputed)	N
603	chr6_qbl_hap6	2388915	2388916	rs9263692	32492067	Ruffieux H	2020-06-03	PLoS Comput Biol	A fully joint Bayesian quantitative trait locus mapping of human protein abundance in plasma.	Protein quantitative trait loci	394 European ancestry individuals	548 European ancestry individuals	6p21.33	NR	rs9263692-?	NR	5E-7	(MICA)			Illumina [~ 4000000] (imputed)	N
603	chr6_qbl_hap6	2389409	2389410	rs3815087	21801394	Genin E	2011-07-29	Orphanet J Rare Dis	Genome-wide association study of Stevens-Johnson Syndrome and Toxic Epidermal Necrolysis in Europe.	Drug-induced Stevens-Johnson syndrome or toxic epidermal necrolysis (SJS/TEN)	424 European ancestry cases, 1,881 European ancestry controls	NA	6p21.33	PSORS1C1	rs3815087-A	0.21	3E-7		1.53	[1.29-1.80]	Illumina [268914]	N
603	chr6_qbl_hap6	2389409	2389410	rs3815087	20041166	Fellay J	2009-12-24	PLoS Genet	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	6p21.33	CDSN	rs3815087-?	NR	8E-8	(progression)			Illumina [NR]	N
603	chr6_qbl_hap6	2389769	2389770	rs3094196	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	PSORS1C1	rs3094196-G	NR	9E-10		0.0228214	[0.016-0.03] unit decrease	Affymetrix [323123] (imputed)	N
603	chr6_qbl_hap6	2390021	2390022	rs13209303	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6p21.33	PSORS1C2	rs13209303-?	NR	7E-6	(TAG 52:6)	0.4081859	[0.23-0.59] unit increase	Affymetrix [at least 2500000] (imputed)	N
603	chr6_qbl_hap6	2390825	2390826	rs6931921	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Strep throat	52,487 European ancestry cases, 22,017 European ancestry controls	NA	6p21.33	NR	rs6931921-?	NR	5E-7		0.045	[0.027-0.063] unit decrease	Illumina [at least 560000] (imputed)	N
603	chr6_qbl_hap6	2391116	2391117	rs3131004	34075027	Gonda X	2021-06-01	Transl Psychiatry	Genetic underpinnings of affective temperaments: a pilot GWAS investigation identifies a new genome-wide significant SNP for anxious temperament in ADGRB3 gene.	Hyperthymic temperament	775 European ancestry individuals	NA	6p21.33		rs3131004-G	NR	9E-7		0.04087	unit decrease	Illumina [2550710] (imputed)	N
603	chr6_qbl_hap6	2391643	2391644	rs9263715	32771030	Tangtanatakul P	2020-08-08	Arthritis Res Ther	Meta-analysis of genome-wide association study identifies FBN2 as a novel locus associated with systemic lupus erythematosus in Thai population.	Systemic lupus erythematosus	487 Thai cases, 1,606 Thai controls	405 Thai cases, 1,590 Thai controls	6p21.33	PSORS1C1	rs9263715-A	0.32	2E-9		1.4329	[NR]	Illumina [421909] (imputed)	N
603	chr6_qbl_hap6	2392867	2392868	rs74375290	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Epithelial ovarian cancer	1,112 White British ancestry cases, 147,944 White British ancestry controls	NA	6p21.33		rs74375290-?	NR	6E-6		2.32386	[1.96-2.69]	NR [666300]	N
603	chr6_qbl_hap6	2393143	2393144	rs3130559	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PSORS1C1	rs3130559-T	NR	2E-8		0.0192616	[0.013-0.026] unit increase	Affymetrix [319769] (imputed)	N
603	chr6_qbl_hap6	2393143	2393144	rs3130559	23144326	Kim DK	2012-11-09	Am J Respir Crit Care Med	Genome-wide association analysis of blood biomarkers in chronic obstructive pulmonary disease.	Chronic obstructive pulmonary disease-related biomarkers	Up to 1,951 European ancestry smokers	NA	6p21.33	PSORS1C1	rs3130559-T	0.2	8E-9	(SP-D)			Illumina [588352]	N
603	chr6_qbl_hap6	2393656	2393657	rs6906565	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	6p21.33	NR	rs6906565-T	0.0994448200117359	2E-12		0.01719559	[0.012-0.022] unit increase	NR [NR]	N
603	chr6_qbl_hap6	2393656	2393657	rs6906565	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	6p21.33	NR	rs6906565-T	0.0994448200117359	2E-12		0.011002761	[0.0079-0.0141] unit increase	NR [NR]	N
603	chr6_qbl_hap6	2393977	2393978	rs3131006	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mononucleosis	17,457 European ancestry cases, 68,446 European ancestry controls	NA	6p21.33	NR	rs3131006-?	NR	3E-6		0.0727	[0.042-0.103] unit decrease	Illumina [at least 560000] (imputed)	N
603	chr6_qbl_hap6	2394577	2394578	rs3132541	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental longevity (mother's age at death)	52,776 middle-aged British individuals	NA	6p21.33	NR	rs3132541-?	NR	5E-6		0.032324	[0.018-0.046] unit increase	Affymetrix [9658292] (imputed)	N
603	chr6_qbl_hap6	2395082	2395083	rs143933372	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Creatinine levels	142,097 Japanese ancestry individuals	NA	6p21.33	PSORS1C1	rs143933372-?	NR	2E-8		0.03607	[0.024-0.049] unit decrease novel	Illumina [6108953] (imputed)	N
603	chr6_qbl_hap6	2395420	2395421	rs4959053	23001997	Hou S	2012-12-06	Arthritis Rheum	Identification of a susceptibility locus in STAT4 for Behcet's disease in Han Chinese in a genome-wide association study.	Behcet's disease	147 Han Chinese ancestry cases, 951 Han Chinese ancestry controls	554 Han Chinese ancestry cases, 1,159 Han Chinese ancestry controls	6p21.33	PSORS1C1	rs4959053-?	.11	2E-20		4.38	[3.20-5.99]	Affymetrix [661736]	N
603	chr6_qbl_hap6	2396473	2396473	rs548139121	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	PSORS1C1	rs548139121-TAA	NR	4E-8		0.0196747	[0.013-0.027] unit increase	Affymetrix [323123] (imputed)	N
603	chr6_qbl_hap6	2396789	2396790	rs3823418	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals, at least 88,461 European ancestry individuals	NA	6p21.33	PSORS1C1	rs3823418-A	0.1032	2E-7	(Japanese)	0.0338	[0.021-0.047] unit decrease	Illumina [1986983] (imputed)	N
603	chr6_qbl_hap6	2396789	2396790	rs3823418	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	6p21.33	PSORS1C1	rs3823418-A	0.15	2E-7		0.026	[0.0084-0.0436] unit increase	Affymetrix, Illumina [2704730] (imputed)	N
603	chr6_qbl_hap6	2397273	2397274	rs3132569	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PSORS1C1	rs3132569-A	NR	2E-10		0.022581	[0.016-0.03] unit decrease	Affymetrix [321016] (imputed)	N
603	chr6_qbl_hap6	2397430	2397431	rs4294047	33841421	Li J	2021-03-25	Front Immunol	Variants at the MHC Region Associate With Susceptibility to <i>Clostridioides difficile</i> Infection: A Genome-Wide Association Study Using Comprehensive Electronic Health Records.	Clostridioides difficle infection in antibiotics-users	587 European ancestry cases, 3,166 European ancestry controls	NA	6p21.33	PSORS1C2	rs4294047-A	0.103	8E-6		1.53	[1.28-1.8]	Illumina [64973696] (imputed)	N
603	chr6_qbl_hap6	2397521	2397522	rs3130564	25827949	Kunz M	2015-05-04	Exp Dermatol	Genome-wide association study identifies new susceptibility loci for cutaneous lupus erythematosus.	Cutaneous lupus erythematosus	151 European ancestry cases, 1,288 European ancestry controls	219 European ancestry cases, 262 European ancestry controls	6p21.33	PSORS1C1	rs3130564-T	0.163	4E-10		2.05	[1.56-2.70]	Affymetrix [906600]	N
603	chr6_qbl_hap6	2397521	2397522	rs3130564	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.33	PSORS1C1	rs3130564-T	0.1934	1E-42		2.62	[NR]	Illumina [242824]	N
603	chr6_qbl_hap6	2398119	2398120	rs75881311	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.33	NR	rs75881311-A	0.082	3E-13	(conditional)	1.279	[1.21-1.35]	Illumina [11270530] (imputed)	N
603	chr6_qbl_hap6	2398151	2398152	rs61444472	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	683 Turkish ancestry cases, 1,721 Turkish ancestry controls	NA	6p21.33	PSORSIC1	rs61444472-?	NR	2E-17	(conditional on rs2844678 and rs9262437)			Illumina [4495750] (imputed)	N
603	chr6_qbl_hap6	2398810	2398811	rs3132565	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	6p21.33	NR	rs3132565-A	NR	1E-9		1.07	[NR]	Illumina [7158791] (imputed)	N
603	chr6_qbl_hap6	2399041	2399042	rs3094669	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	6p21.33	NR	rs3094669-G	0.135689518720733	6E-9		0.015982522	[0.011-0.021] unit decrease	NR [NR]	N
603	chr6_qbl_hap6	2399435	2399436	rs13198298	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	6p21.33	NR	rs13198298-T	0.101343027086662	2E-12		0.010678657	[0.0077-0.0137] unit increase	NR [NR]	N
603	chr6_qbl_hap6	2399435	2399436	rs13198298	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	6p21.33	NR	rs13198298-T	0.101343027086662	3E-12		0.01306148	[0.0094-0.0167] unit increase	NR [NR]	N
603	chr6_qbl_hap6	2399435	2399436	rs13198298	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	6p21.33	NR	rs13198298-T	0.101343027086662	6E-12		0.013910175	[0.0099-0.0179] unit increase	NR [NR]	N
603	chr6_qbl_hap6	2399907	2399908	rs1265101	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PSORS1C1	rs1265101-A	NR	5E-12		0.058179	[0.042-0.075] unit decrease	Affymetrix [321016] (imputed)	N
603	chr6_qbl_hap6	2400439	2400440	rs28732100	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Subjective well-being (MTAG)	388,538 European ancestry individuals	NA	6p21.33	NR	rs28732100-C	0.9494	2E-8		0.0245	[0.016-0.033] unit increase	Illumina [NR] (imputed)	N
603	chr6_qbl_hap6	2400439	2400440	rs28732100	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Neuroticism (MTAG)	168,105 European ancestry individuals	NA	6p21.33	NR	rs28732100-C	0.9458	2E-8		0.037	[0.024-0.05] unit decrease	Illumina [NR] (imputed)	N
603	chr6_qbl_hap6	2400439	2400440	rs28732100	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms (MTAG)	354,862 European ancestry individuals	NA	6p21.33	NR	rs28732100-C	0.9481	2E-9		0.0293	[0.02-0.039] unit decrease	Illumina [NR] (imputed)	N
603	chr6_qbl_hap6	2400701	2400702	rs3094665	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	PSORS1C1	rs3094665-C	NR	1E-8		0.020395	[0.013-0.027] unit decrease	Affymetrix [323123] (imputed)	N
603	chr6_qbl_hap6	2401111	2401112	rs3132559	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PSORS1C1	rs3132559-G	NR	2E-8		0.0159183	[0.01-0.021] unit decrease	Affymetrix [321016] (imputed)	N
603	chr6_qbl_hap6	2401111	2401112	rs3132559	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	PSORS1C1	rs3132559-G	NR	2E-9		0.0185127	[0.012-0.025] unit decrease	Affymetrix [323123] (imputed)	N
603	chr6_qbl_hap6	2401156	2401157	rs1265100	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6p21.33		rs1265100-?	NR	8E-13		0.894617	[0.86-0.93]	NR [685523]	N
603	chr6_qbl_hap6	2401258	2401259	rs1265099	30626913	Amare AT	2019-01-09	Mol Psychiatry	Bivariate genome-wide association analyses of the broad depression phenotype combined with major depressive disorder, bipolar disorder or schizophrenia reveal eight novel genetic loci for depression.	Broad depression or schizophrenia	9,240 European ancestry broad depression cases, 9,519 European ancestry broad depression controls, 51,258 European ancestry individuals, 36,989 European and East Asian ancestry schizophrenia cases, 113,075 European and East Asian ancestry schizophrenia controls	322,580 individuals	6p21.33	PSORS1C2	rs1265099-A	0.41	2E-10				Affymetrix, Illumina [at least 918921] (imputed)	N
603	chr6_qbl_hap6	2401478	2401479	rs2074478	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.33		rs2074478-T	0.809793	4E-16		1.0453895	[1.03-1.05]	Affymetrix, Illumina [9851866] (imputed)	N
603	chr6_qbl_hap6	2402113	2402114	rs3130573	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	PSORS1C1, PSORS1C2	rs3130573-G	NR	1E-9		0.0200379	[0.014-0.026] unit decrease	Affymetrix [323858] (imputed)	N
603	chr6_qbl_hap6	2402113	2402114	rs3130573	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	PSORS1C1, PSORS1C2	rs3130573-G	NR	3E-9		0.0196118	[0.013-0.026] unit decrease	Affymetrix [127266] (imputed)	N
603	chr6_qbl_hap6	2402113	2402114	rs3130573	21750679	Allanore Y	2011-07-07	PLoS Genet	Genome-wide scan identifies TNIP1, PSORS1C1, and RHOB as novel risk loci for systemic sclerosis.	Systemic sclerosis	564 European ancestry cases, 1,776 European ancestry controls	1,682 European ancestry cases, 3,926 European ancestry controls	6p21.33	PSORS1C1	rs3130573-G	0.32	6E-10		1.25	[1.17-1.35]	Illumina [489814]	N
603	chr6_qbl_hap6	2402304	2402305	rs1265097	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PSORS1C1, PSORS1C2	rs1265097-A	NR	3E-9		0.0309409	[0.021-0.041] unit increase	Affymetrix [319769] (imputed)	N
603	chr6_qbl_hap6	2402304	2402305	rs1265097	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	PSORS1C1, PSORS1C2	rs1265097-A	NR	4E-8		0.0285098	[0.018-0.039] unit increase	Affymetrix [319769] (imputed)	N
603	chr6_qbl_hap6	2402304	2402305	rs1265097	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PSORS1C1, PSORS1C2	rs1265097-A	NR	3E-15		0.0410297	[0.031-0.051] unit decrease	Affymetrix [321016] (imputed)	N
603	chr6_qbl_hap6	2402304	2402305	rs1265097	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	PSORS1C1, PSORS1C2	rs1265097-A	NR	7E-10		0.0349645	[0.024-0.046] unit decrease	Affymetrix [323123] (imputed)	N
603	chr6_qbl_hap6	2402304	2402305	rs1265097	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	6p21.33	PSORS1C1	rs1265097-C	0.917203	7E-18		0.0323248	[0.025-0.04] unit decrease	Affymetrix [NR] (imputed)	N
603	chr6_qbl_hap6	2402304	2402305	rs1265097	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	6p21.33	NR	rs1265097-?	NR	8E-7		0.04125219	[0.025-0.058] unit decrease	Illumina [34656550] (imputed)	N
603	chr6_qbl_hap6	2402304	2402305	rs1265097	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.33	PSORS1C2, PSORS1C1	rs1265097-A	0.1234	1E-10		0.072	[0.05-0.094] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
603	chr6_qbl_hap6	2402304	2402305	rs1265097	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	6p21.33	PSORS1C1, PSORS1C2	rs1265097-A	0.115	2E-32		0.059	[0.049-0.069] unit decrease	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
603	chr6_qbl_hap6	2402334	2402335	rs1265096	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	6p21.33	NR	rs1265096-?		7E-9	(SFTPD)	0.3365	[NR] unit increase	Illumina [NR]	N
603	chr6_qbl_hap6	2402450	2402451	rs16898823	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals	at least 101,293 European ancestry individuals	6p21.33	PSORS1C1, PSORS1C2	rs16898823-A	0.9	3E-8	(Japanese)	0.037	[0.023-0.051] unit increase	Illumina [5864938] (imputed)	N
603	chr6_qbl_hap6	2403031	2403032	rs1265093	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PSORS1C1	rs1265093-A	NR	2E-11		0.0205689	[0.015-0.027] unit increase	Affymetrix [319769] (imputed)	N
603	chr6_qbl_hap6	2403031	2403032	rs1265093	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	PSORS1C1	rs1265093-A	NR	1E-10		0.0198483	[0.014-0.026] unit increase	Affymetrix [319769] (imputed)	N
603	chr6_qbl_hap6	2403031	2403032	rs1265093	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	PSORS1C1	rs1265093-A	NR	2E-11		0.0223747	[0.016-0.029] unit decrease	Affymetrix [323123] (imputed)	N
603	chr6_qbl_hap6	2403031	2403032	rs1265093	23144326	Kim DK	2012-11-09	Am J Respir Crit Care Med	Genome-wide association analysis of blood biomarkers in chronic obstructive pulmonary disease.	Chronic obstructive pulmonary disease-related biomarkers	Up to 1,951 European ancestry smokers	NA	6p21.33	PSORS1C1, CCHCR1	rs1265093-A	0.26	6E-9	(SP-D)			Illumina [588352]	N
603	chr6_qbl_hap6	2403102	2403103	rs2285803	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PSORS1C1	rs2285803-T	NR	3E-8		0.0173578	[0.011-0.023] unit decrease	Affymetrix [319769] (imputed)	N
603	chr6_qbl_hap6	2403102	2403103	rs2285803	33875642	Duran-Lozano L	2021-04-19	Blood Cancer J	Germline variants at SOHLH2 influence multiple myeloma risk.	Multiple myeloma	4,376 European ancestry cases, 345,887 European ancestry controls	5,598 European ancestry cases, 15,261 European ancestry controls	6p21.33	PSORS1C2	rs2285803-T	0.26	1E-11		1.17	[NR]	Illumina [33000000] (imputed)	N
603	chr6_qbl_hap6	2403102	2403103	rs2285803	23955597	Chubb D	2013-08-18	Nat Genet	Common variation at 3q26.2, 6p21.33, 17p11.2 and 22q13.1 influences multiple myeloma risk.	Multiple myeloma	2,335 European ancestry cases, 7,306 European ancestry controls	2,357 European ancestry cases, 3,684 European ancestry controls	6p21.33	PSORS1C1, CCHCR1, TCF19, POU5F1, CDSN	rs2285803-A	0.32	1E-10		1.192	[1.13-1.26]	Illumina [414804]	N
603	chr6_qbl_hap6	2403972	2403973	rs1265091	32769997	Zhou W	2020-08-07	Nat Commun	GWAS of thyroid stimulating hormone highlights pleiotropic effects and inverse association with thyroid cancer.	Thyroid stimulating hormone levels	119,715 European ancestry individuals	NA	6p21.33	PSORS1C1	rs1265091-T	0.187386210350798	5E-15		0.0553	[0.041-0.069] SD increase	Illumina [22400000] (imputed)	N
603	chr6_qbl_hap6	2403972	2403973	rs1265091	30367059	Teumer A	2018-10-26	Nat Commun	Genome-wide analyses identify a role for SLC17A4 and AADAT in thyroid hormone regulation.	Thyroid stimulating hormone levels	54,288 European ancestry individuals	up to 22,383 European ancestry individuals	6p21.33	PSORS1C1	rs1265091-T	0.2	5E-15		0.058	[0.044-0.072] unit increase	Affymetrix, Illumina [8048941] (imputed)	N
603	chr6_qbl_hap6	2405385	2405386	rs9263737	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Lymphocyte counts	62,076 Japanese ancestry individuals	NA	6p21.33	NR	rs9263737-?	NR	4E-8		0.03399	[0.022-0.046] unit decrease novel	Illumina [6108953] (imputed)	N
603	chr6_qbl_hap6	2405715	2405716	rs1265086	33143745	Andlauer TFM	2020-11-04	BMC Med	Treatment- and population-specific genetic risk factors for anti-drug antibodies against interferon-beta: a GWAS.	Binding antibody response to interferon beta therapy in multiple sclerosis (antibody levels; all treatment preparations)	up to 2,000 German and Swedish ancestry individuals	up to 757 German and Swedish ancestry individuals	6p21.33		rs1265086-T	0.38	5E-9	(conditional on rs9272071 + rs28746882)	0.15234222	[-0.1--0.2] unit decrease	Illumina [8550834] (imputed)	N
603	chr6_qbl_hap6	2407189	2407190	rs9263739	19915573	Asano K	2009-11-15	Nat Genet	A genome-wide association study identifies three new susceptibility loci for ulcerative colitis in the Japanese population.	Ulcerative colitis	376 Japanese ancestry cases, 934 Japanese ancestry controls	376 Japanese ancestry cases, 1,097 Japanese ancestry controls	6p21.33	HLA	rs9263739-T	0.15	4E-67		2.73	[2.43-3.07]	Illumina [513923]	N
603	chr6_qbl_hap6	2407508	2407509	rs1265081	32276964	Shete S	2020-04-10	Cancer Res	A genome-wide association study identifies two novel susceptible regions for squamous cell carcinoma of the head and neck.	Head and neck squamous cell carcinoma	2,171 European ancestry cases, 4,493 European ancestry controls	5,205 European ancestry cases, 3,232 European ancestry controls	6p21.33	CCHCR1	rs1265081-A	0.52	4E-10		1.1764705	[1.11-1.23]	Illumina [7858089] (imputed)	N
603	chr6_qbl_hap6	2407911	2407912	rs1265080	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Non-Hodgkin's lymphoma	2,400 European ancestry cases, 410,350 European ancestry controls	NA	6p21.33		rs1265080-A	NR	2E-8		1.1785504	NR	Affymetrix [7846216] (imputed)	N
603	chr6_qbl_hap6	2408949	2408950	rs1265075	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6p21.33	CCHCR1	rs1265075-A	0.076201	5E-17		0.037481945	[0.029-0.046] unit increase	Affymetrix [93095623] (imputed)	N
603	chr6_qbl_hap6	2408949	2408950	rs1265075	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	6p21.33	CCHCR1	rs1265075-A	0.076277	4E-25		0.04465471	[0.036-0.053] unit decrease	Affymetrix [93095623] (imputed)	N
603	chr6_qbl_hap6	2408949	2408950	rs1265075	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6p21.33	CCHCR1	rs1265075-A	0.076136	8E-24		0.044859033	[0.036-0.054] unit decrease	Affymetrix [93095623] (imputed)	N
603	chr6_qbl_hap6	2408949	2408950	rs1265075	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	6p21.33	CCHCR1	rs1265075-A	0.07622	8E-10		0.026229646	[0.018-0.035] unit increase	Affymetrix [93095623] (imputed)	N
603	chr6_qbl_hap6	2409112	2409113	rs886401	33143745	Andlauer TFM	2020-11-04	BMC Med	Treatment- and population-specific genetic risk factors for anti-drug antibodies against interferon-beta: a GWAS.	Binding antibody response to interferon beta therapy in multiple sclerosis (antibody levels; IFN?-1a subcutaneous and intramuscular)	up to 2,000 German and Swedish ancestry individuals	up to 757 German and Swedish ancestry individuals	6p21.33		rs886401-A	NR	4E-12		0.24661802	[0.18-0.32] unit increase	Illumina [8550834] (imputed)	N
603	chr6_qbl_hap6	2410736	2410737	rs2240060	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals, 6,795 African American individuals, 6,324 East Asian ancestry individuals, 2,335 South Asian ancestry individuals, 1,442 Hispanic individuals	NA	6p21.33	CCHCR1	rs2240060-A	NR	3E-10		0.0137	[0.0094-0.018] unit increase	Affymetrix, Illumina [8034757] (imputed)	N
603	chr6_qbl_hap6	2410736	2410737	rs2240060	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals	NA	6p21.33	CCHCR1	rs2240060-A	0.2881	6E-10		0.0136336	[0.0093-0.018] unit increase	Affymetrix, Illumina [8603712] (imputed)	N
603	chr6_qbl_hap6	2410736	2410737	rs2240060	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Microalbuminuria	51,861 European, African American, East Asian, South Asian or Hispanic ancestry cases, 297,093 European, African American, East Asian, South Asian or Hispanic ancestry controls	NA	6p21.33	CCHCR1	rs2240060-A	NR	4E-7		1.0380044	[1.02-1.05]	Affymetrix, Illumina [8326000] (imputed)	N
603	chr6_qbl_hap6	2412044	2412045	rs130071	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.33		rs130071-A	NR	3E-11		1.1198208	[1.08-1.16]	Affymetrix [7846216] (imputed)	N
603	chr6_qbl_hap6	2412044	2412045	rs130071	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6p21.33	NR	rs130071-G	0.7038	3E-16		1.0548522	[1.04-1.07]	Affymetrix [15688218] (imputed)	N
603	chr6_qbl_hap6	2412360	2412361	rs3132535	27363682	Mitchell JS	2016-07-01	Nat Commun	Genome-wide association study identifies multiple susceptibility loci for multiple myeloma.	Multiple myeloma	7,319 European ancestry cases, 234,385 European ancestry controls	2,547 European ancestry cases, 4,803 European ancestry controls	6p21.33	NR	rs3132535-A		3E-17		1.2	[1.15-1.25]	Illumina [at least 7182761] (imputed)	N
603	chr6_qbl_hap6	2412461	2412462	rs3131014	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	CCHCR1	rs3131014-A	NR	1E-8		0.0188268	[0.012-0.025] unit increase	Affymetrix [319769] (imputed)	N
603	chr6_qbl_hap6	2412461	2412462	rs3131014	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	CCHCR1	rs3131014-A	NR	2E-11		0.0223184	[0.016-0.029] unit decrease	Affymetrix [321016] (imputed)	N
603	chr6_qbl_hap6	2412461	2412462	rs3131014	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	CCHCR1	rs3131014-A	NR	7E-15		0.0280938	[0.021-0.035] unit decrease	Affymetrix [323123] (imputed)	N
603	chr6_qbl_hap6	2412573	2412574	rs9263761	33239696	Steinthorsdottir V	2020-11-25	Nat Commun	Genetic predisposition to hypertension is associated with preeclampsia in European and Central Asian women.	Preeclampsia (maternal genotype effect)	2,296 Central Asian ancestry cases, 2,059 Central Asian ancestry controls, 7,219 European ancestry cases, 155,660 European ancestry controls	592 Kazakh ancestry cases, 361 Kazakh ancestry controls, 2,043 European ancestry cases, 6,018 European ancestry controls	6p21.33		rs9263761-G	0.76	2E-6		1.11	[1.06-1.16]	Illumina [11796347] (imputed)	N
603	chr6_qbl_hap6	2412910	2412911	rs1265115	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	CCHCR1	rs1265115-A	NR	6E-9		0.0193434	[0.013-0.026] unit decrease	Affymetrix [323123] (imputed)	N
603	chr6_qbl_hap6	2413851	2413852	rs1265112	21810746	Chantarangsu S	2011-08-01	Clin Infect Dis	Genome-wide association study identifies variations in 6p21.3 associated with nevirapine-induced rash.	Nevirapine-induced rash	72 Thai ancestry nevirapine-induced rash HIV cases, 77 Thai ancestry nevirapine-tolerant rash HIV cases	88 Thai ancestry nevirapine-induced rash HIV cases, 145 Thai ancestry nevirapine-tolerant HIV cases		CCHCR1	rs1265112-G	0.06	1E-8		4.36	[2.58-7.36]	Illumina [499730]	N
603	chr6_qbl_hap6	2414343	2414344	rs130067	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	6p21.33	NR	rs130067-G	0.2	2E-7		1.05	[1.03-1.07]	Illumina [20370935] (imputed)	N
603	chr6_qbl_hap6	2414343	2414344	rs130067	21743467	Kote-Jarai Z	2011-07-10	Nat Genet	Seven prostate cancer susceptibility loci identified by a multi-stage genome-wide association study.	Prostate cancer	6,621 European ancestry cases, 6,939 European ancestry controls	22,957 European ancestry cases, 23,234 European ancestry controls, 420 East Asian ancestry cases, 433 East Asian ancestry controls, 112 African American cases, 298 African American controls, 7,140 cases, 5,455 controls	6p21.33	CCHCR1	rs130067-G	0.21	3E-8		1.05	[1.02-1.09]	NR [2600000] (imputed)	N
603	chr6_qbl_hap6	2415701	2415702	rs1265108	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	CCHCR1	rs1265108-T	NR	1E-8		0.0172707	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
603	chr6_qbl_hap6	2415701	2415702	rs1265108	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	CCHCR1	rs1265108-T	NR	1E-12		0.0213867	[0.015-0.027] unit decrease	Affymetrix [321016] (imputed)	N
603	chr6_qbl_hap6	2415701	2415702	rs1265108	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	CCHCR1	rs1265108-T	NR	8E-15		0.0255848	[0.019-0.032] unit decrease	Affymetrix [323123] (imputed)	N
603	chr6_qbl_hap6	2417259	2417260	rs143334143	33307546	Pairo-Castineira E	2020-12-11	Nature	Genetic mechanisms of critical illness in Covid-19.	COVID-19 (critical illness vs population)	2,804 European ancestry cases, 2,415 European, South Asian and Hispanic or Latin American ancestry cases, 687,911 European ancestry controls, 477,741 European, South Asian and Hispanic or Latin American ancestry controls	NA	6p21.33		rs143334143-A	NR	2E-10		1.3	[1.27-1.48]	Illumina [NR] (imputed)	N
603	chr6_qbl_hap6	2418333	2418334	rs130065	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8 on CD28+ CD45RA+ CD8+ T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs130065-A	0.16421	1E-14		0.3127	[0.23-0.39] unit decrease	Illumina [17954496] (imputed)	N
603	chr6_qbl_hap6	2424179	2424180	rs9263789	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	TCF19	rs9263789-A	NR	3E-9		0.0228494	[0.015-0.03] unit increase	Affymetrix [321169] (imputed)	N
603	chr6_qbl_hap6	2424402	2424403	rs3130934	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	6p21.33		rs3130934-A	0.315939	3E-10		0.028368	[0.02-0.037] unit increase	NR [11722792] (imputed)	N
603	chr6_qbl_hap6	2424402	2424403	rs3130934	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	6p21.33		rs3130934-A	0.315939	3E-9		0.0263765	[0.018-0.035] unit increase	NR [11722792] (imputed)	N
603	chr6_qbl_hap6	2425160	2425161	rs7750641	33909500	Moll M	2021-04-28	Am J Physiol Lung Cell Mol Physiol	A Systematic Analysis of Protein-altering Exonic Variants in Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease	up to 31,465 European ancestry cases, up to 203,688 European ancestry controls, up to 1,413 African ancestry cases, up to 6,080 African ancestry controls, up to 287 East Asian ancestry cases, up to 7,484 East Asian ancestry controls, up to 61 Hispanic cases, up to 613 Hispanic controls	NA	6p21.33	TCF19	rs7750641-T	0.15	1E-12		1.11	[1.08 -1.14]	Illumina [at least 109036]	N
603	chr6_qbl_hap6	2425160	2425161	rs7750641	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.33	TCF19	rs7750641-T	0.1263	3E-58		3.35	[NR]	Illumina [242824]	N
603	chr6_qbl_hap6	2425466	2425467	rs2073721	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes (adjusted for BMI)	up to 48,286 European ancestry cases, up to 250,671 European ancestry controls	NA	6p21.33	MHC	rs2073721-G	0.742	6E-10		1.04	[1.03-1.06]	Affymetrix, Illumina [247470]	N
603	chr6_qbl_hap6	2425466	2425467	rs2073721	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes (adjusted for BMI)	48,286 European ancestry cases, 250,671 European ancestry controls, 33,126 African American, East Asian, Hispanic/Latino or South Asian cases, 120,161 African American, East Asian, Hispanic/Latino or South Asian controls	NA	6p21.33	MHC	rs2073721-G	0.749	2E-9		1.04	[1.02-1.05]	Affymetrix, Illumina [247470]	N
603	chr6_qbl_hap6	2425466	2425467	rs2073721	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes	up to 48,286 European ancestry cases, up to 250,671 European ancestry controls	NA	6p21.33	MHC	rs2073721-G	0.742	6E-9		1.04	[1.02-1.06]	Affymetrix, Illumina [247470]	N
603	chr6_qbl_hap6	2425466	2425467	rs2073721	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes	48,286 European ancestry cases, 250,671 European ancestry controls, 33,126 African American, East Asian, Hispanic/Latino or South Asian cases, 120,161 African American, East Asian, Hispanic/Latino or South Asian controls	NA	6p21.33	MHC	rs2073721-G	0.749	2E-10		1.04	[1.02-1.05]	Affymetrix, Illumina [247470]	N
603	chr6_qbl_hap6	2426443	2426444	rs1419881	25802187	Jiang DK	2015-04-28	Hepatology	Genetic variants in five novel loci including CFB and CD40 predispose to chronic hepatitis B.	Chronic hepatitis B infection	2,514 Chinese ancestry cases, 1,130 Chinese ancestry controls	6,600 Chinese ancestry cases, 8,127 Chinese ancestry controls	6p21.33	TCF19	rs1419881-G	0.55	3E-7		1.12	[1.08-1.18]	Illumina [3680900] (imputed)	N
603	chr6_qbl_hap6	2426443	2426444	rs1419881	23760081	Kim YJ	2013-06-10	Hum Mol Genet	A genome-wide association study identified new variants associated with the risk of chronic hepatitis B.	Chronic hepatitis B infection	400 Korean ancestry cases, 1,000 Korean ancestry controls	971 Korean ancestry cases, 1,938 Korean ancestry controls	6p21.33	TCF19	rs1419881-?	NR	1E-18		1.37	[1.23-1.52]	Illumina [719265]	N
603	chr6_qbl_hap6	2427295	2427296	rs182661945	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	6p21.33	NR	rs182661945-?	NR	2E-9		5.977	NR z score increase	Illumina [at least 830937] (imputed)	N
603	chr6_qbl_hap6	2427936	2427937	rs3130933	33649182	Penova M	2021-03-01	Proc Natl Acad Sci U S A	Genome wide association study of HTLV-1-associated myelopathy/tropical spastic paraparesis in the Japanese population.	HTLV-1 associated myelopathy	731 Japanese ancestry cases, 846 Japanese ancestry controls	NA	6p21.33		rs3130933-T	0.04	5E-9		2.44	[1.81-3.29]	Illumina [126394]	N
603	chr6_qbl_hap6	2430754	2430755	rs3130931	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	6p21.33	NR	rs3130931-C	0.6765	2E-32		0.0482	[0.04-0.056] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
603	chr6_qbl_hap6	2430754	2430755	rs3130931	21801394	Genin E	2011-07-29	Orphanet J Rare Dis	Genome-wide association study of Stevens-Johnson Syndrome and Toxic Epidermal Necrolysis in Europe.	Drug-induced Stevens-Johnson syndrome or toxic epidermal necrolysis (SJS/TEN)	424 European ancestry cases, 1,881 European ancestry controls	NA	6p21.33	POU5F1	rs3130931-C	0.69	8E-7		1.54	[1.29-1.84]	Illumina [268914]	N
603	chr6_qbl_hap6	2431856	2431857	rs185402687	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	6p21.33	POU5F1	rs185402687-C	0.0157	6E-14		0.1102721	[0.081-0.139] unit decrease	Affymetrix [~ 2500000] (imputed)	N
603	chr6_qbl_hap6	2432321	2432322	rs3130501	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	6p21.33	POU5F1	rs3130501-G	0.7833	6E-9	(EA)	0.0693	[0.046-0.093] unit increase	Affymetrix, Illumina [NR] (imputed)	N
603	chr6_qbl_hap6	2432321	2432322	rs3130501	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	6p21.33	POU5F1	rs3130501-G	0.7833	4E-12		0.063	[0.045-0.081] unit increase	Affymetrix, Illumina [NR] (imputed)	N
603	chr6_qbl_hap6	2432321	2432322	rs3130501	21801394	Genin E	2011-07-29	Orphanet J Rare Dis	Genome-wide association study of Stevens-Johnson Syndrome and Toxic Epidermal Necrolysis in Europe.	Drug-induced Stevens-Johnson syndrome or toxic epidermal necrolysis (SJS/TEN)	424 European ancestry cases, 1,881 European ancestry controls	NA	6p21.33	POU5F1	rs3130501-G	0.74	2E-8		1.74	[1.43-2.13]	Illumina [268914]	N
603	chr6_qbl_hap6	2432582	2432583	rs3132524	24509480	Mahajan A	2014-02-09	Nat Genet	Genome-wide trans-ancestry meta-analysis provides insight into the genetic architecture of type 2 diabetes susceptibility.	Type 2 diabetes	12,171 European ancestry cases, 56,862 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls	21,491 European ancestry cases, 55,647 European ancestry controls	6p21.33	TCF19, POU5F1	rs3132524-G		4E-9		1.07	[1.04-1.09]	Affymetrix, Illumina [2500000] (imputed)	N
603	chr6_qbl_hap6	2433975	2433976	rs1062630	28654678	Mandage R	2017-06-27	PLoS One	Genetic factors affecting EBV copy number in lymphoblastoid cell lines derived from the 1000 Genome Project samples.	Epstein-Barr virus copy number in lymphoblastoid cell lines	389 East Asian ancestry individuals, 189 South Asian ancestry individuals, 492 European ancestry individuals, 467 Sub-Saharan African ancestry individuals, 59 African American individuals, 157 Hispanic/Latino individuals	NA	6p21.33	POU5F1	rs1062630-?	NR	1E-6				NR [at least 880000]	N
603	chr6_qbl_hap6	2435320	2435321	rs879882	31935283	Du Z	2020-01-01	Blood Adv	A meta-analysis of genome-wide association studies of multiple myeloma among men and women of African ancestry.	Multiple myeloma	1,813 African American and African ancestry cases, 8,871 African American and African ancestry controls	NA	6p21.33	NR	rs879882-T	0.45	1E-6		1.2	[1.12-1.29]	Illumina [12683648] (imputed)	N
603	chr6_qbl_hap6	2435320	2435321	rs879882	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	6p21.33	MICA	rs879882-?	NR	2E-7	(Conditioned on rs2256183)		[NR]	Affymetrix, Illumina [2834208] (imputed)	N
603	chr6_qbl_hap6	2435915	2435916	rs1265159	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.33	intergenic	rs1265159-T	0.2191	4E-37		2.42	[NR]	Illumina [242824]	N
603	chr6_qbl_hap6	2436020	2436021	rs885950	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	6p21.33	POU5F1, HCG27, HLA	rs885950-C	0.42	7E-13		1.08	[1.07-1.09]	Illumina [at least 560000] (imputed)	N
603	chr6_qbl_hap6	2436609	2436610	rs1265158	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	POU5F1	rs1265158-G	NR	1E-8		0.0185854	[0.012-0.025] unit decrease	Affymetrix [323858] (imputed)	N
603	chr6_qbl_hap6	2436609	2436610	rs1265158	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	POU5F1	rs1265158-G	NR	3E-8		0.0179118	[0.012-0.024] unit decrease	Affymetrix [127266] (imputed)	N
603	chr6_qbl_hap6	2436609	2436610	rs1265158	28087736	Ludwig KU	2017-01-13	Hum Mol Genet	Imputation of orofacial clefting data identifies novel risk loci and sheds light on the genetic background of cleft lip ? cleft palate and cleft palate only.	Nonsyndromic cleft lip with or without cleft palate	399 European ancestry cases, 1,318 European ancestry controls, 666 European ancestry trios, 795 Asian trios	224 European ancestry cases, 921 European ancestry controls, 152 Mayan cases, 323 Mayan controls, 198 Middle Eastern cases, 391 Middle Eastern controls	6p21.33	NR	rs1265158-?		5E-6	(EA)			NR [8012124] (imputed)	N
603	chr6_qbl_hap6	2436609	2436610	rs1265158	28087736	Ludwig KU	2017-01-13	Hum Mol Genet	Imputation of orofacial clefting data identifies novel risk loci and sheds light on the genetic background of cleft lip ? cleft palate and cleft palate only.	Nonsyndromic cleft lip with or without cleft palate	399 European ancestry cases, 1,318 European ancestry controls, 666 European ancestry trios, 795 Asian trios	224 European ancestry cases, 921 European ancestry controls, 152 Mayan cases, 323 Mayan controls, 198 Middle Eastern cases, 391 Middle Eastern controls	6p21.33	NR	rs1265158-?		3E-6	(All)			NR [8012124] (imputed)	N
603	chr6_qbl_hap6	2437077	2437078	rs2269712	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.33		rs2269712-A	0.249	1E-10				Affymetrix [10369434] (imputed)	N
603	chr6_qbl_hap6	2437077	2437078	rs2269712	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	POU5F1	rs2269712-A	NR	2E-8		0.0181335	[0.012-0.024] unit decrease	Affymetrix [319769] (imputed)	N
603	chr6_qbl_hap6	2437350	2437351	rs116763857	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p21.33	PSORS1C3	rs116763857-G	0.027	1E-14		0.295	[0.22-0.37] unit decrease	Affymetrix, Illumina [7374092] (imputed)	N
603	chr6_qbl_hap6	2438113	2438114	rs3094188	23266558	Yamazaki K	2012-12-21	Gastroenterology	A genome-wide association study identifies 2 susceptibility Loci for Crohn's disease in a Japanese population.	Crohn's disease	372 Japanese ancestry cases,3,389 Japanese ancestry controls	Up to 1,151 Japanese ancestry cases, up to 15,800 Japanese ancestry controls	6p21.33	PSORS1C3	rs3094188-C	0.280	7E-7		1.61	[1.33-1.94]	Illumina [4929034] (imputed)	N
603	chr6_qbl_hap6	2438113	2438114	rs3094188	21801394	Genin E	2011-07-29	Orphanet J Rare Dis	Genome-wide association study of Stevens-Johnson Syndrome and Toxic Epidermal Necrolysis in Europe.	Drug-induced Stevens-Johnson syndrome or toxic epidermal necrolysis (SJS/TEN)	424 European ancestry cases, 1,881 European ancestry controls	NA	6p21.33	POU5F1	rs3094188-A	0.63	3E-8		1.59	[1.34-1.88]	Illumina [268914]	N
603	chr6_qbl_hap6	2439379	2439380	rs887466	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation GrimAge acceleration	34,467 European ancestry individuals	NA	6p21.33	NR	rs887466-A	0.3815	5E-10		0.1928	[0.13-0.25] unit decrease	Affymetrix, Illumina [7568149] (imputed)	N
603	chr6_qbl_hap6	2439450	2439451	rs3131018	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.33		rs3131018-A	0.369	3E-21				Affymetrix [10369434] (imputed)	N
603	chr6_qbl_hap6	2439450	2439451	rs3131018	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p21.33		rs3131018-A	0.369	2E-16				Affymetrix [10369434] (imputed)	N
603	chr6_qbl_hap6	2439450	2439451	rs3131018	21051598	Pereyra F	2010-11-04	Science	The major genetic determinants of HIV-1 control affect HLA class I peptide presentation.	HIV-1 control	516 European cases, 1,196 European controls, 341 African American cases, 892 African American controls, 117 Hispanic cases, 560 Hispanic controls	NA	6p21.33	PSORS1C3	rs3131018-C	0.625	4E-16	(EA)	2.1	[NR]	Illumina [1384048] (imputed)	N
603	chr6_qbl_hap6	2440505	2440506	rs9404937	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	POU5F1, PSORS1C3	rs9404937-A	NR	7E-13		0.0235486	[0.017-0.03] unit decrease	Affymetrix [323123] (imputed)	N
603	chr6_qbl_hap6	2443345	2443346	rs3130507	29227965	Pilling LC	2017-12-01	Aging (Albany NY)	Human longevity: 25 genetic loci associated in 389,166 UK biobank participants.	Parental longevity (mother's attained age)	412,937 British ancestry individuals	NA	6p21.33	PSORS1C3	rs3130507-G	0.72	2E-10		0.0155	[0.011-0.02] unit decrease	Affymetrix [11535925] (imputed)	N
603	chr6_qbl_hap6	2443345	2443346	rs3130507	29227965	Pilling LC	2017-12-01	Aging (Albany NY)	Human longevity: 25 genetic loci associated in 389,166 UK biobank participants.	Parental longevity (combined parental attained age, Martingale residuals)	389,166 British ancestry individuals	NA	6p21.33	PSORS1C3	rs3130507-G	NR	4E-6			[NR]	Affymetrix [11535925] (imputed)	N
603	chr6_qbl_hap6	2450125	2450126	rs7753892	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GNLY	5,366 Icelandic ancestry individuals	NA	6p21.33		rs7753892-C	0.3652	5E-15		0.154032	[0.12-0.19] unit increase	Illumina [7506463] (imputed)	N
603	chr6_qbl_hap6	2450125	2450126	rs7753892	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GNLY	5,366 Icelandic ancestry individuals	NA	6p21.33		rs7753892-C	0.3652	2E-14		0.15056	[0.11-0.19] unit increase	Illumina [7506463] (imputed)	N
603	chr6_qbl_hap6	2450225	2450226	rs13203101	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p21.33	NR	rs13203101-?	NR	3E-15		0.1435	[0.11-0.18] unit decrease	Illumina [at least 560000] (imputed)	N
603	chr6_qbl_hap6	2450297	2450298	rs3130458	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	POU5F1	rs3130458-T	NR	6E-12		0.0238773	[0.017-0.031] unit decrease	Affymetrix [323858] (imputed)	N
603	chr6_qbl_hap6	2450297	2450298	rs3130458	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	POU5F1	rs3130458-T	NR	3E-11		0.0230527	[0.016-0.03] unit decrease	Affymetrix [127266] (imputed)	N
603	chr6_qbl_hap6	2450683	2450684	rs6922051	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	POU5F1	rs6922051-C	NR	7E-12		0.0225553	[0.016-0.029] unit decrease	Affymetrix [323123] (imputed)	N
603	chr6_qbl_hap6	2451642	2451643	rs1265181	30921485	Bejaoui Y	2019-03-28	Exp Dermatol	Genome-wide association study of psoriasis in an Egyptian population.	Psoriasis	215 Egyptian ancestry cases, 416 Egyptian ancestry controls	321 Egyptian ancestry cases, 253 Egyptian ancestry controls	6p21.33	HCG27	rs1265181-?	NR	1E-10		2.0	[1.62-2.45]	Illumina [312245]	N
603	chr6_qbl_hap6	2451642	2451643	rs1265181	19169255	Zhang XJ	2009-01-25	Nat Genet	Psoriasis genome-wide association study identifies susceptibility variants within LCE gene cluster at 1q21.	Psoriasis	1,139 Han Chinese ancestry cases, 1,132 Han Chinese ancestry controls	5,721 Chinese ancestry cases, 7,340 Chinese ancestry controls	6p21.33	MHC	rs1265181-?	NR	2E-208		22.62		Illumina [494902]	N
603	chr6_qbl_hap6	2451895	2451896	rs9368661	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	6p21.33	NR	rs9368661-T	0.258577	1E-19		0.02376896	[0.019-0.029] unit increase	Affymetrix [93095623] (imputed)	N
603	chr6_qbl_hap6	2452043	2452044	rs9263850	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG299F13.17	rs9263850-G	NR	1E-9		0.0190638	[0.013-0.025] unit decrease	Affymetrix [321016] (imputed)	N
603	chr6_qbl_hap6	2452043	2452044	rs9263850	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG299F13.17	rs9263850-G	NR	5E-16		0.0275644	[0.021-0.034] unit decrease	Affymetrix [323123] (imputed)	N
603	chr6_qbl_hap6	2454040	2454041	rs9295958	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG299F13.17	rs9295958-A	NR	1E-10		0.0250366	[0.017-0.033] unit decrease	Affymetrix [323123] (imputed)	N
603	chr6_qbl_hap6	2454417	2454417	rs145171179	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	6p21.33	XXbac-BPG299F13.17	rs145171179-GA	0.212169	4E-9		0.020656763	[0.014-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
603	chr6_qbl_hap6	2454490	2454491	rs9263861	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	6p21.33	HLA region	rs9263861-?	NR	3E-8	(EA)			Affymetrix, Illumina [10537485] (imputed)	N
603	chr6_qbl_hap6	2454490	2454491	rs9263861	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	6p21.33	HLA region	rs9263861-?	NR	3E-8				Affymetrix, Illumina [10537485] (imputed)	N
603	chr6_qbl_hap6	2454689	2454690	rs7741829	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	6p21.33	XXbac-BPG299F13.17	rs7741829-C	0.289979	2E-13		0.019235091	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
603	chr6_qbl_hap6	2454877	2454878	rs7742179	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG299F13.17	rs7742179-A	NR	3E-13		0.0215095	[0.016-0.027] unit decrease	Affymetrix [321016] (imputed)	N
603	chr6_qbl_hap6	2454877	2454878	rs7742179	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG299F13.17	rs7742179-A	NR	9E-21		0.0299448	[0.024-0.036] unit decrease	Affymetrix [323123] (imputed)	N
603	chr6_qbl_hap6	2455667	2455669	rs550239034	31577861	Dai J	2019-10-31	Int J Cancer	Genome-wide association study of INDELs identified four novel susceptibility loci associated with lung cancer risk.	Lung cancer	20,871 European ancestry cases, 15,971 European ancestry controls, 2,331 Chinese ancestry cases, 3,077 Chinese ancestry controls	NA	6p21.33	POU5F1	rs550239034-D	0.25	2E-7		0.92	[0.89-0.95]	Illumina [484196]	N
603	chr6_qbl_hap6	2459816	2459817	rs28749551	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	6p21.33	XXbac-BPG299F13.17	rs28749551-C	0.189749	9E-23		0.029464645	[0.024-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
603	chr6_qbl_hap6	2459816	2459817	rs28749551	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	6p21.33	XXbac-BPG299F13.17	rs28749551-C	0.1902	8E-18		0.03930922	[0.03-0.048] unit decrease	Affymetrix [~ 2500000] (imputed)	N
603	chr6_qbl_hap6	2460619	2460620	rs28362333	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	6p21.33		rs28362333-C	0.530396419	7E-20		0.08448383	[0.066-0.103] unit increase	Illumina [13429769] (imputed)	N
603	chr6_qbl_hap6	2461677	2461678	rs28362345	31935283	Du Z	2020-01-01	Blood Adv	A meta-analysis of genome-wide association studies of multiple myeloma among men and women of African ancestry.	Multiple myeloma	1,813 African American and African ancestry cases, 8,871 African American and African ancestry controls	NA	6p21.33	NR	rs28362345-T	0.7	6E-7		1.24	[1.14-1.34]	Illumina [12683648] (imputed)	N
603	chr6_qbl_hap6	2463877	2463878	rs6903896	20585627	Eriksson N	2010-06-24	PLoS Genet	Web-based, participant-driven studies yield novel genetic associations for common traits.	Common traits (Other)	9,126 European ancestry individuals	NA	6p21.33	NR	rs6903896-?	NR	6E-7	(sneeze)			Illumina [535076]	N
603	chr6_qbl_hap6	2464245	2464246	rs9263868	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p21.33	NR	rs9263868-?	NR	4E-21		0.1525	[0.12-0.18] unit increase	Illumina [at least 560000] (imputed)	N
603	chr6_qbl_hap6	2464550	2464551	rs138864366	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs138864366-C	0.027	4E-32	(Cyclic AMP-responsive element-binding protein 3-like protein 4, CREB3L4.11308.8.3)	1.03	[0.85-1.21] unit increase	Affymetrix [10572788] (imputed)	N
603	chr6_qbl_hap6	2465426	2465427	rs28362359	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs28362359-C	0.875	4E-34				Affymetrix [10369434] (imputed)	N
603	chr6_qbl_hap6	2465866	2465867	rs9263869	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCG27	rs9263869-C	NR	1E-8		0.0173241	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
603	chr6_qbl_hap6	2465866	2465867	rs9263869	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HCG27	rs9263869-C	NR	3E-8		0.0168281	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
603	chr6_qbl_hap6	2465866	2465867	rs9263869	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCG27	rs9263869-C	NR	3E-10		0.0208071	[0.014-0.027] unit decrease	Affymetrix [323123] (imputed)	N
603	chr6_qbl_hap6	2465977	2465978	rs1793899	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCG27	rs1793899-A	NR	2E-14		0.0870835	[0.065-0.109] unit decrease	Affymetrix [321016] (imputed)	N
603	chr6_qbl_hap6	2466074	2466075	rs9366770	30980028	de Kovel CGF	2019-04-12	Sci Rep	The molecular genetics of hand preference revisited.	Handedness (Right-handed vs. non-right-handed)	293,857 British ancestry cases, 37,180 British ancestry controls	NA	6p21.33	HCG27	rs9366770-?	NR	2E-9				Affymetrix [~ 15000000] (imputed)	N
603	chr6_qbl_hap6	2466374	2466375	rs9263871	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	6p21.33	NR	rs9263871-?		2E-14	(MICA)			Illumina [NR]	N
603	chr6_qbl_hap6	2466374	2466375	rs9263871	24925725	Chung SA	2014-06-12	J Am Soc Nephrol	Lupus nephritis susceptibility loci in women with systemic lupus erythematosus.	Lupus nephritis in systemic lupus erythematosus	588 European ancestry cases, 1,412 European ancestry controls	NA	6p21.33	HCG27	rs9263871-G	NR	9E-6	(Dominant)	1.7	[1.35-2.13]	Affymetrix, Illumina [1621689] (imputed)	N
603	chr6_qbl_hap6	2466760	2466761	rs9263875	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HCG27	rs9263875-G	NR	6E-11		0.0190363	[0.013-0.025] unit increase	Affymetrix [321169] (imputed)	N
603	chr6_qbl_hap6	2467788	2467788	rs146660653	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCG27	rs146660653-ATCTAT	NR	4E-8		0.0193068	[0.012-0.026] unit decrease	Affymetrix [323123] (imputed)	N
603	chr6_qbl_hap6	2468002	2468003	rs3132510	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Diastolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	6p21.33	HCG27	rs3132510-C	0.6478	3E-14		0.3056	[0.23-0.38] mmHg increase	Affymetrix [NR] (imputed)	N
603	chr6_qbl_hap6	2468002	2468003	rs3132510	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p21.33	NR	rs3132510-?	NR	1E-7		5.296	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
603	chr6_qbl_hap6	2468002	2468003	rs3132510	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p21.33	NR	rs3132510-?	NR	4E-14		0.2588	[0.19-0.32] unit decrease	Illumina [at least 560000] (imputed)	N
603	chr6_qbl_hap6	2468200	2468201	rs3887381	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCG27	rs3887381-T	NR	8E-14		0.0210107	[0.015-0.027] unit increase	Affymetrix [319769] (imputed)	N
603	chr6_qbl_hap6	2468200	2468201	rs3887381	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HCG27	rs3887381-T	NR	2E-12		0.0197787	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
603	chr6_qbl_hap6	2468200	2468201	rs3887381	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCG27	rs3887381-T	NR	3E-20		0.0282671	[0.022-0.034] unit decrease	Affymetrix [323123] (imputed)	N
603	chr6_qbl_hap6	2470377	2470378	rs2894181	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCG27	rs2894181-G	NR	5E-9		0.0164875	[0.011-0.022] unit decrease	Affymetrix [321016] (imputed)	N
603	chr6_qbl_hap6	2470608	2470609	rs28744239	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p21.33	NR	rs28744239-C	0.147	5E-9	(IFNAR2_of_CD20p)			Illumina [5084123] (imputed)	N
603	chr6_qbl_hap6	2470790	2470791	rs185386680	26599303	Cheung CL	2016-01-12	Clin Pharmacol Ther	HLA-B*38:02:01 predicts carbimazole/methimazole-induced agranulocytosis.	Antithyroid drug-induced agranulocytosis	20 Southern Chinese ancestry cases, 775 East Asian ancestry controls	4 Southern Chinese ancestry cases, 387 East Asian ancestry controls	6p21.33	HLA-B*38:02:01	rs185386680-?	NR	4E-29		24.7	9.2-66.3	Illumina [5339940] (imputed)	N
603	chr6_qbl_hap6	2471807	2471808	rs1619179	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs for peptic ulcer and gastro-oesophageal reflux disease)	53,137 European ancestry cases, 79,230 European ancestry controls, 53,363 East Asian ancestry cases, 125,363 East Asian ancestry controls	NA	6p21.33		rs1619179-C	NR	4E-11		0.0701	[0.049-0.091] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
603	chr6_qbl_hap6	2471807	2471808	rs1619179	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (drugs for peptic ulcer and gastro-oesophageal reflux disease)	53,137 European ancestry cases, 79,230 European ancestry controls	NA	6p21.33	HCG27	rs1619179-C	0.154861	4E-11		0.07005687	[0.049-0.091] unit decrease	Affymetrix [7288503] (imputed)	N
603	chr6_qbl_hap6	2471807	2471808	rs1619179	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p21.33	NR	rs1619179-?	NR	3E-10		0.0882	[0.061-0.116] unit decrease	Illumina [at least 560000] (imputed)	N
603	chr6_qbl_hap6	2472107	2472108	rs4410769	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCG27	rs4410769-T	NR	2E-9		0.0188767	[0.013-0.025] unit increase	Affymetrix [323858] (imputed)	N
603	chr6_qbl_hap6	2472107	2472108	rs4410769	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HCG27	rs4410769-T	NR	3E-8		0.0173066	[0.011-0.023] unit increase	Affymetrix [127266] (imputed)	N
603	chr6_qbl_hap6	2473371	2473372	rs9501519	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCG27	rs9501519-T	NR	3E-11		0.0187496	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
603	chr6_qbl_hap6	2473371	2473372	rs9501519	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HCG27	rs9501519-T	NR	1E-10		0.0181428	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
603	chr6_qbl_hap6	2473519	2473520	rs9501520	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCG27	rs9501520-C	NR	2E-10		0.0200324	[0.014-0.026] unit increase	Affymetrix [323858] (imputed)	N
603	chr6_qbl_hap6	2473519	2473520	rs9501520	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HCG27	rs9501520-C	NR	6E-10		0.0194184	[0.013-0.026] unit increase	Affymetrix [127266] (imputed)	N
603	chr6_qbl_hap6	2474062	2474063	rs17191272	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCG27	rs17191272-C	NR	3E-11		0.020396	[0.014-0.026] unit decrease	Affymetrix [323123] (imputed)	N
603	chr6_qbl_hap6	2474831	2474832	rs36039697	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.33		rs36039697-G	0.748	2E-17				Affymetrix [10369434] (imputed)	N
603	chr6_qbl_hap6	2480051	2480052	rs3869109	22319020	Davies RW	2012-02-07	Circ Cardiovasc Genet	A genome-wide association study for coronary artery disease identifies a novel susceptibility locus in the major histocompatibility complex.	Coronary heart disease	7,123 European ancestry cases, 6,826 European ancestry controls	5,211 European ancestry cases, 5,821 European ancestry controls	6p21.33	HCG27, HLA-C	rs3869109-G	NR	1E-9		1.14	[NR]	Affymetrix [~ 5000000] (imputed)	N
603	chr6_qbl_hap6	2481905	2481906	rs9263963	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs9263963-T	0.113293342563644	1E-6	(IGP23)	0.2567	[0.15-0.36] unit increase	Illumina [~ 2500000] (imputed)	N
603	chr6_qbl_hap6	2482957	2482958	rs3130467	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (mother's age at death or mother's attained age)	up to 699,000 individuals	NA	6p21.33	NR	rs3130467-G		3E-7				Illumina [458525]	N
603	chr6_qbl_hap6	2487195	2487196	rs9263988	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.33		rs9263988-C	0.937	6E-19				Affymetrix [10369434] (imputed)	N
603	chr6_qbl_hap6	2488675	2488676	rs9263993	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	6p21.33	HLA region	rs9263993-?	NR	9E-9	(EA)			Affymetrix, Illumina [10537485] (imputed)	N
603	chr6_qbl_hap6	2488675	2488676	rs9263993	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	6p21.33	HLA region	rs9263993-?	NR	2E-7				Affymetrix, Illumina [10537485] (imputed)	N
603	chr6_qbl_hap6	2488706	2488707	rs6904670	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28- CD8+ T cell %CD8+ T cell	3,440 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs6904670-G	0.64142	3E-8		0.1458	[0.094-0.197] unit decrease	Illumina [18357815] (imputed)	N
603	chr6_qbl_hap6	2489982	2489983	rs6928399	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG299F13.16	rs6928399-T	NR	7E-12		0.0204256	[0.015-0.026] unit increase	Affymetrix [319769] (imputed)	N
603	chr6_qbl_hap6	2489982	2489983	rs6928399	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG299F13.16	rs6928399-T	NR	9E-11		0.0193191	[0.013-0.025] unit increase	Affymetrix [319769] (imputed)	N
603	chr6_qbl_hap6	2489982	2489983	rs6928399	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG299F13.16	rs6928399-T	NR	7E-11		0.0196879	[0.014-0.026] unit increase	Affymetrix [321169] (imputed)	N
604	chr6_qbl_hap6	2490752	2490753	rs7769059	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	6p21.33	HCG27	rs7769059-G	0.716625	1E-12		0.0150833	[0.011-0.019] unit increase	Affymetrix [NR] (imputed)	N
604	chr6_qbl_hap6	2492019	2492020	rs3134783	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Sarcoidosis	1,718 European ancestry cases, 484,955 European ancestry controls, 220 East Asian ancestry cases, 177,667 East Asian ancestry controls	NA	6p21.33		rs3134783-A	NR	6E-9		0.2583	[0.17-0.35] unit increase	Affymetrix, Illumina [25845061] (imputed)	N
604	chr6_qbl_hap6	2492270	2492271	rs3130941	24324648	Yatagai Y	2013-12-04	PLoS One	Genome-wide association study for levels of total serum IgE identifies HLA-C in a Japanese population.	IgE levels	967 Japanese ancestry individuals, 213 Japanese ancestry asthmatic individuals	1,894 Japanese ancestry individuals, 580 Japanese ancestry asthmatic individuals	6p21.33	HCG27, HLA-C	rs3130941-C	0.25	1E-10		0.098	unit increase	Illumina [479940]	N
604	chr6_qbl_hap6	2493960	2493961	rs3130473	29534301	Nishida N	2018-03-13	Hepatology	Key HLA-DRB1-DQB1 haplotypes and role of the BTNL2 gene for response to a hepatitis B vaccine.	Response to hepatitis B vaccine	107 Japanese ancestry low responder individuals, 351 Japanese ancestry intermediate responder individuals, 735 Japanese ancestry high responder individuals	NA	6p21.33	HLA-C	rs3130473-?		8E-6		0.128	unit decrease	Affymetrix [427664]	N
604	chr6_qbl_hap6	2494216	2494217	rs3869114	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.33		rs3869114-G	NR	2E-7		1.204	[1.122-1.292]	Affymetrix [7846216] (imputed)	N
604	chr6_qbl_hap6	2494516	2494517	rs11967684	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	6p21.33	intergenic	rs11967684-A	0.3428	2E-24		0.03858957	[0.031-0.046] unit increase	Affymetrix [~ 2500000] (imputed)	N
604	chr6_qbl_hap6	2494516	2494517	rs11967684	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	6p21.33	intergenic	rs11967684-A	0.3428	1E-29		0.04284561	[0.035-0.05] unit increase	Affymetrix [~ 2500000] (imputed)	N
604	chr6_qbl_hap6	2495520	2495521	rs7757622	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG299F13.16	rs7757622-C	NR	2E-16		0.023531	[0.018-0.029] unit decrease	Affymetrix [321169] (imputed)	N
604	chr6_qbl_hap6	2499426	2499427	rs3869115	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	46,511 Asian ancestry cases, 169,776 Asian ancestry controls	NA	6p21.33	NR	rs3869115-G	0.1981	1E-17		0.1004	[0.077-0.123] unit decrease	Affymetrix, Illumina [1077427] (imputed)	N
604	chr6_qbl_hap6	2499426	2499427	rs3869115	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p21.33	HCG27, HLA-C	rs3869115-C	0.06	6E-7	(Turkish)	2.23	[1.62-3.08]	Illumina [up to 547389]	N
604	chr6_qbl_hap6	2499718	2499719	rs3134770	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p21.33	NR	rs3134770-?	NR	8E-8		0.0723	[0.046-0.099] unit increase	Illumina [at least 560000] (imputed)	N
604	chr6_qbl_hap6	2500939	2500940	rs3130685	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Effector Memory CD8+ T cell Absolute Count	3,395 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs3130685-T	0.34389	2E-8		0.1803	[0.12-0.24] unit increase	Illumina [18332267] (imputed)	N
604	chr6_qbl_hap6	2500939	2500940	rs3130685	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8+ T cell Absolute Count	3,652 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs3130685-T	0.34283	4E-11		0.1887	[0.13-0.24] unit increase	Illumina [18427348] (imputed)	N
604	chr6_qbl_hap6	2500939	2500940	rs3130685	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8+ T cell %leukocyte	3,668 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs3130685-T	0.34283	1E-9		0.1801	[0.12-0.24] unit increase	Illumina [18430788] (imputed)	N
604	chr6_qbl_hap6	2500939	2500940	rs3130685	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28- CD8+ T cell Absolute Count	3,408 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs3130685-T	0.3439	3E-10		0.1894	[0.13-0.25] unit increase	Illumina [18340221] (imputed)	N
604	chr6_qbl_hap6	2500939	2500940	rs3130685	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD127- CD8+ T cell Absolute Count	3,371 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs3130685-T	0.34485	9E-10		0.1905	[0.13-0.25] unit increase	Illumina [18321960] (imputed)	N
604	chr6_qbl_hap6	2502500	2502501	rs9461666	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6p21.33		rs9461666-G	0.021815	7E-10		0.0478569	[0.033-0.063] unit increase	Affymetrix [93095623] (imputed)	N
604	chr6_qbl_hap6	2502792	2502793	rs5875302	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	349,856 European ancestry individuals, 91,908 East Asian ancestry individuals	NA	6p21.33		rs5875302-C	NR	9E-24		0.046	[0.037-0.055] unit decrease	Affymetrix, Illumina [20529536] (imputed)	N
604	chr6_qbl_hap6	2503328	2503329	rs3132497	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG299F13.16	rs3132497-G	NR	3E-9		0.0221455	[0.015-0.029] unit increase	Affymetrix [323123] (imputed)	N
604	chr6_qbl_hap6	2506474	2506475	rs117506082	32072174	Okamoto D	2020-02-19	Inflamm Bowel Dis	Genetic Analysis of Ulcerative Colitis in Japanese Individuals Using Population-specific SNP Array.	Ulcerative colitis	601 Japanese ancestry cases, 1,962 Japanese ancestry controls	1,075 Japanese ancestry cases, 419 Japanese ancestry controls	6p21.33	HLA	rs117506082-G	NR	4E-88		3.39	[2.99-3.83]	NR [4760823] (imputed)	N
604	chr6_qbl_hap6	2506566	2506567	rs1639106	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG299F13.16	rs1639106-T	NR	9E-12		0.0601547	[0.043-0.077] unit decrease	Affymetrix [321016] (imputed)	N
604	chr6_qbl_hap6	2506779	2506780	rs117759870	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs117759870-?		6E-8		1.06	[1.04-1.09]	Illumina [7645193] (imputed)	N
604	chr6_qbl_hap6	2512243	2512244	rs3130427	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	6p21.33		rs3130427-G	0.594789	2E-27		0.029043514	[0.024-0.034] unit increase	Affymetrix [93095623] (imputed)	N
604	chr6_qbl_hap6	2513217	2513218	rs55839536	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs55839536-A	NR	2E-8		0.023416	[0.015-0.032] unit decrease	Affymetrix [321016] (imputed)	N
604	chr6_qbl_hap6	2513501	2513502	rs7449932	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	6p21.33		rs7449932-C	0.223006	2E-9		0.0272642	[0.018-0.036] unit increase	NR [11722792] (imputed)	N
604	chr6_qbl_hap6	2514040	2514041	rs3130436	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	6p21.33	NR	rs3130436-?	NR	4E-7		0.0523	[0.032-0.072] unit decrease	Illumina [at least 560000] (imputed)	N
604	chr6_qbl_hap6	2514040	2514041	rs3130436	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	6p21.33	HCG27, HLA-C	rs3130436-?	NR	4E-7		1.0537407	[1.03-1.08]	Illumina [13754664] (imputed)	N
604	chr6_qbl_hap6	2514280	2514281	rs3130439	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LILRB1	5,363 Icelandic ancestry individuals	NA	6p21.33		rs3130439-G	0.4964	8E-23		0.179906	[0.14-0.22] unit decrease	Illumina [7506463] (imputed)	N
604	chr6_qbl_hap6	2514556	2514557	rs17197839	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-C	rs17197839-A	NR	1E-8		0.0267548	[0.018-0.036] unit decrease	Affymetrix [323123] (imputed)	N
604	chr6_qbl_hap6	2514556	2514557	rs17197839	33549134	Adolphe C	2021-02-06	Genome Med	Genetic and functional interaction network analysis reveals global enrichment of regulatory T cell genes influencing basal cell carcinoma susceptibility.	Basal cell carcinoma	17,416 European ancestry cases, 375,455 European ancestry controls	NA	6p21.33	HLA-C	rs17197839-A	0.118172	3E-11		0.1165139	[0.082-0.151] unit decrease	Affymetrix [7260263] (imputed)	N
604	chr6_qbl_hap6	2514608	2514609	rs1793892	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs1793892-C	NR	2E-9		0.0258258	[0.017-0.034] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_qbl_hap6	2514608	2514609	rs1793892	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-C	rs1793892-C	NR	3E-9		0.0256321	[0.017-0.034] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_qbl_hap6	2514626	2514627	rs17191538	33574277	Kawai Y	2021-02-11	NPJ Genom Med	Mapping of susceptible variants for cold medicine-related Stevens-Johnson syndrome by whole-genome resequencing.	Cold medicine-related Stevens-Johnson syndrome/toxic epidermal necrolysis (SJS/TEN) with severe ocular complications	133 Japanese ancestry cases, 418 Japanese ancestry controls	NA	6p21.33		rs17191538-G	0.2231	7E-7		2.483		Illumina [7608150]	N
604	chr6_qbl_hap6	2514925	2514926	rs3095254	25096241	Keller MF	2014-08-05	Hum Mol Genet	Trans-ethnic meta-analysis of white blood cell phenotypes.	Monocyte count	9,810 Japanese ancestry individuals, 16,550 European ancestry individuals, 7,369 African American individuals	NA	6p21.33	MHC	rs3095254-C	0.461	8E-9	(Japanese)	0.035	[0.023-0.047] unit increase	Illumina [NR] (imputed)	N
604	chr6_qbl_hap6	2514925	2514926	rs3095254	21738478	Okada Y	2011-06-30	PLoS Genet	Identification of nine novel loci associated with white blood cell subtypes in a Japanese population.	White blood cell types	8,794 Japanese ancestry individuals	5,998 Japanese ancestry individuals	6p21.33	MHC	rs3095254-C	0.46	6E-11	(monocyte count)	0.074	[0.05-0.09] unit increase	Illumina [2178645] (imputed)	N
604	chr6_qbl_hap6	2515439	2515440	rs1793889	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.33	CCHCR1, CDSN, HCG27, HLA-C, POU5F1, PSORS1C1, PSORS1C2, PSORS1C3, TCF19	rs1793889-?		1E-11		1.0869565	[1.06-1.11]	Affymetrix, Illumina [NR]	N
604	chr6_qbl_hap6	2517914	2517915	rs9264277	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.33		rs9264277-T	0.367	2E-13				Affymetrix [10369434] (imputed)	N
604	chr6_qbl_hap6	2517914	2517915	rs9264277	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.33		rs9264277-T	0.367	4E-8				Affymetrix [10369434] (imputed)	N
604	chr6_qbl_hap6	2517914	2517915	rs9264277	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.33		rs9264277-T	0.367	2E-36				Affymetrix [10369434] (imputed)	N
604	chr6_qbl_hap6	2517914	2517915	rs9264277	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	6p21.33		rs9264277-T	0.367	1E-9				Affymetrix [10369434] (imputed)	N
604	chr6_qbl_hap6	2517914	2517915	rs9264277	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs9264277-T	0.367	6E-12				Affymetrix [10369434] (imputed)	N
604	chr6_qbl_hap6	2517964	2517965	rs201871433	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	6p21.33		rs201871433-C	0.598843295	3E-14		0.080714226	[0.06-0.101] unit increase	Illumina [13134967] (imputed)	N
604	chr6_qbl_hap6	2520014	2520015	rs2440367	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs2440367-T	NR	4E-8		0.0177003	[0.011-0.024] unit increase	Affymetrix [321016] (imputed)	N
604	chr6_qbl_hap6	2520481	2520482	rs150543164	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	6p21.33	NR	rs150543164-C	0.971256	7E-11		0.0420252	[0.029-0.055] unit decrease	NR [NR]	N
604	chr6_qbl_hap6	2521430	2521431	rs9264354	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	6p21.33		rs9264354-T	0.225	2E-41				Affymetrix [10369434] (imputed)	N
604	chr6_qbl_hap6	2521431	2521432	rs9264355	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs9264355-T	NR	2E-11		0.0253701	[0.018-0.033] unit increase	Affymetrix [321016] (imputed)	N
604	chr6_qbl_hap6	2521602	2521603	rs6939900	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	6p21.33		rs6939900-C	0.644363	2E-13		0.0298309	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
604	chr6_qbl_hap6	2521602	2521603	rs6939900	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	6p21.33		rs6939900-C	0.644357	3E-11		0.0278375	[0.02-0.036] unit decrease	NR [11722792] (imputed)	N
604	chr6_qbl_hap6	2521602	2521603	rs6939900	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.33		rs6939900-T	0.35467	3E-26		0.03356077	[0.027-0.04] unit increase	Affymetrix [93095623] (imputed)	N
604	chr6_qbl_hap6	2521785	2521786	rs17191797	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	6p21.33	intergenic	rs17191797-G	0.0881	1E-10		0.04047984	[0.028-0.053] unit decrease	Affymetrix [~ 2500000] (imputed)	N
604	chr6_qbl_hap6	2522796	2522797	rs2844626	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Varicose veins	22,037 European ancestry cases, 437,665 European ancestry controls, 474 East Asian ancestry cases, 178,252 East Asian ancestry controls	NA	6p21.33		rs2844626-T	NR	1E-10		0.0734	[0.051-0.096] unit decrease	Affymetrix, Illumina [25842955] (imputed)	N
604	chr6_qbl_hap6	2522967	2522968	rs9264408	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs9264408-G	NR	5E-13		0.0253984	[0.019-0.032] unit decrease	Affymetrix [319769] (imputed)	N
604	chr6_qbl_hap6	2522967	2522968	rs9264408	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-C	rs9264408-G	NR	3E-12		0.0245478	[0.018-0.031] unit decrease	Affymetrix [319769] (imputed)	N
604	chr6_qbl_hap6	2523177	2523178	rs9264413	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	6p21.33	intergenic	rs9264413-T	0.8098	4E-40		0.0600596	[0.051-0.069] unit decrease	Affymetrix [~ 2500000] (imputed)	N
604	chr6_qbl_hap6	2523240	2523241	rs17192134	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	6p21.33		rs17192134-G	0.916	3E-52				Affymetrix [10369434] (imputed)	N
604	chr6_qbl_hap6	2523240	2523241	rs17192134	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p21.33	NR	rs17192134-T	0.084521	2E-25		0.048713	[0.04-0.058] unit increase	Affymetrix [93095623] (imputed)	N
604	chr6_qbl_hap6	2523684	2523685	rs17192225	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Prostate cancer	7,438 White British ancestry cases, 118,206 White British ancestry controls	NA	6p21.33		rs17192225-?	NR	2E-6		1.12175	[1.07-1.17]	NR [680312]	N
604	chr6_qbl_hap6	2523963	2523964	rs9357120	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	91,908 East Asian ancestry individuals	NA	6p21.33		rs9357120-A	0.563923	1E-31		0.0533207	[0.044-0.062] unit decrease	Illumina [13469940] (imputed)	N
604	chr6_qbl_hap6	2523963	2523964	rs9357120	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	81,042 East Asian ancestry individuals	NA	6p21.33	NR	rs9357120-T	0.42999	6E-32		0.058958	[0.049-0.069] SD units increase	Affymetrix, Illumina [16286709] (imputed)	N
604	chr6_qbl_hap6	2525234	2525235	rs2853961	31080455	Fatumo S	2019-04-26	Front Genet	Complimentary Methods for Multivariate Genome-Wide Association Study Identify New Susceptibility Genes for Blood Cell Traits.	Blood cell traits (multivariate analysis)	up to 6,407 Sub-Saharan African ancestry individuals	NA	6p21.33	HLA-C	rs2853961-?	NR	4E-8				Illumina [20594536] (imputed)	N
604	chr6_qbl_hap6	2525356	2525357	rs3130542	25802187	Jiang DK	2015-04-28	Hepatology	Genetic variants in five novel loci including CFB and CD40 predispose to chronic hepatitis B.	Chronic hepatitis B infection	2,514 Chinese ancestry cases, 1,130 Chinese ancestry controls	6,600 Chinese ancestry cases, 8,127 Chinese ancestry controls	6p21.33	HLA-C	rs3130542-A	0.16	9E-7		1.17	[1.10-1.24]	Illumina [3680900] (imputed)	N
604	chr6_qbl_hap6	2525356	2525357	rs3130542	24162738	Hu Z	2013-10-27	Nat Genet	New loci associated with chronic hepatitis B virus infection in Han Chinese.	Hepatitis B	951 Han Chinese ancestry HBV carrier cases, 937 Han Chinese ancestry HBV cleared controls	4,230 Chinese ancestry HBV carrier cases, 3,051 Chinese ancestry HBV cleared controls, 2,622 Chinese ancestry controls	6p21.33	HLA-C	rs3130542-A	0.13	9E-14		1.33	[1.23-1.44]	Illumina [490610]	N
604	chr6_qbl_hap6	2525696	2525697	rs2524108	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs2524108-G	NR	1E-9		0.0191519	[0.013-0.025] unit decrease	Affymetrix [319769] (imputed)	N
604	chr6_qbl_hap6	2525696	2525697	rs2524108	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-C	rs2524108-G	NR	4E-9		0.0186193	[0.012-0.025] unit decrease	Affymetrix [319769] (imputed)	N
604	chr6_qbl_hap6	2525696	2525697	rs2524108	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.33	HLA-C	rs2524108-G	0.273435	6E-44		0.050841797	[0.044-0.058] unit decrease	Affymetrix [93095623] (imputed)	N
604	chr6_qbl_hap6	2525788	2525789	rs2844623	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	6p21.33	POU5F1, TCF19	rs2844623-C	0.78	1E-17		1.1	1.08-1.12	Illumina [12557761] (imputed)	N
604	chr6_qbl_hap6	2526069	2526070	rs2524106	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs2524106-A	NR	1E-8		0.0194959	[0.013-0.026] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_qbl_hap6	2526069	2526070	rs2524106	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-C	rs2524106-A	NR	4E-8		0.0188058	[0.012-0.026] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_qbl_hap6	2526155	2526156	rs2524105	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	86,890 East Asian ancestry individuals	NA	6p21.33	NR	rs2524105-G	0.317247	4E-41		0.06908	[0.059-0.079] SD units increase	Affymetrix, Illumina [16279099] (imputed)	N
604	chr6_qbl_hap6	2527754	2527755	rs9264533	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	6p21.33	HLA-C	rs9264533-C	0.8091	4E-33		0.05433897	[0.045-0.063] unit increase	Affymetrix [~ 2500000] (imputed)	N
604	chr6_qbl_hap6	2527901	2527902	rs185207145	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin	108,054 Japanese ancestry individuals	NA	6p21.33	HCG27, HLA-C	rs185207145-?	NR	1E-8		0.05419	[0.036-0.073] unit increase novel	Illumina [6108953] (imputed)	N
604	chr6_qbl_hap6	2528510	2528511	rs2395470	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs2395470-A	NR	5E-15		0.0233443	[0.017-0.029] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_qbl_hap6	2528510	2528511	rs2395470	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-C	rs2395470-A	NR	5E-14		0.0224589	[0.017-0.028] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_qbl_hap6	2528604	2528604	rs139175860	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	6p21.33		rs139175860-TC	0.201723	2E-12		0.0316515	[0.023-0.04] unit increase	Illumina [13476299] (imputed)	N
604	chr6_qbl_hap6	2528755	2528756	rs2853953	25802187	Jiang DK	2015-04-28	Hepatology	Genetic variants in five novel loci including CFB and CD40 predispose to chronic hepatitis B.	Chronic hepatitis B infection	2,514 Chinese ancestry cases, 1,130 Chinese ancestry controls	6,600 Chinese ancestry cases, 8,127 Chinese ancestry controls	6p21.33	HLA-C	rs2853953-A	0.9	5E-20		1.47	[1.35-1.59]	Illumina [3680900] (imputed)	N
604	chr6_qbl_hap6	2528996	2528997	rs9264579	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	6p21.33		rs9264579-A	0.344224	5E-18		0.0325012	[0.025-0.04] unit increase	Illumina [13476266] (imputed)	N
604	chr6_qbl_hap6	2529365	2529366	rs2853951	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-C	rs2853951-C	NR	3E-19		0.0279053	[0.022-0.034] unit increase	Affymetrix [323123] (imputed)	N
604	chr6_qbl_hap6	2529425	2529426	rs2853950	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs2853950-T	NR	1E-10		0.0182212	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_qbl_hap6	2529425	2529426	rs2853950	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-C	rs2853950-T	NR	4E-10		0.0177105	[0.012-0.023] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_qbl_hap6	2529425	2529426	rs2853950	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HLA-C	rs2853950-T	NR	2E-9		0.0171726	[0.012-0.023] unit increase	Affymetrix [321169] (imputed)	N
604	chr6_qbl_hap6	2529660	2529661	rs34131062	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	6p21.33	MICB	rs34131062-?	NR	3E-10	(S_VLDL_TG)	0.07202289	NR unit increase	Illumina [609262]	N
604	chr6_qbl_hap6	2529660	2529661	rs34131062	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	6p21.33	MICB	rs34131062-?	NR	1E-9	(VLDL_TG)	0.071520545	NR unit increase	Illumina [609262]	N
604	chr6_qbl_hap6	2529660	2529661	rs34131062	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	6p21.33	MICB	rs34131062-?	NR	8E-9	(S_VLDL_TG)	0.07218766	NR unit increase	Illumina [609262]	N
604	chr6_qbl_hap6	2529660	2529661	rs34131062	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	6p21.33	MICB	rs34131062-?	NR	1E-8	(VLDL_TG)	0.0707539	NR unit increase	Illumina [609262]	N
604	chr6_qbl_hap6	2529717	2529718	rs2524096	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TXNDC15	5,352 Icelandic ancestry individuals	NA	6p21.33		rs2524096-T	0.3782	1E-49		0.267181	[0.23-0.3] unit decrease	Illumina [7506463] (imputed)	N
604	chr6_qbl_hap6	2529817	2529818	rs1049281	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI in non-smokers	75,379 European ancestry women, 45,811 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	6p21.33	HLA-C	rs1049281-C	0.653	2E-8		0.027	[0.017-0.037] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
604	chr6_qbl_hap6	2529817	2529818	rs1049281	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (joint analysis main effects and smoking interaction)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	6p21.33	HLA-C	rs1049281-C	0.652	2E-10				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
604	chr6_qbl_hap6	2529817	2529818	rs1049281	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	6p21.33	HLA-C	rs1049281-C	0.652	1E-18		0.026	[0.02-0.032] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
604	chr6_qbl_hap6	2529936	2529937	rs3207555	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	6p21.33	HLA-C	rs3207555-A	0.34675	4E-12		0.017413307	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
604	chr6_qbl_hap6	2530309	2530310	rs2894204	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	6p21.33	NA	rs2894204-T	0.6383	8E-25		0.0209	[0.017-0.025] unit increase	NR [~ 27400000] (imputed)	N
604	chr6_qbl_hap6	2530309	2530310	rs2894204	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	6p21.33	NR	rs2894204-T	0.6383	8E-25		0.0209	[0.017-0.025] unit increase	NR [~ 27400000] (imputed)	N
604	chr6_qbl_hap6	2530950	2530951	rs17886880	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs17886880-A	NR	1E-10		0.0204376	[0.014-0.027] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_qbl_hap6	2530950	2530951	rs17886880	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-C	rs17886880-A	NR	1E-9		0.0194517	[0.013-0.026] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_qbl_hap6	2530950	2530951	rs17886880	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs17886880-A	NR	2E-11		0.0214244	[0.015-0.028] unit decrease	Affymetrix [321016] (imputed)	N
604	chr6_qbl_hap6	2531023	2531024	rs1050118	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	121,047 East Asian ancestry individuals	NA	6p21.33	NR	rs1050118-C	0.759821	5E-17		0.039726	[0.03-0.049] SD units decrease	Affymetrix, Illumina [16286195] (imputed)	N
604	chr6_qbl_hap6	2531105	2531106	rs34794906	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-C	rs34794906-C	NR	7E-15		0.027207	[0.02-0.034] unit decrease	Affymetrix [323123] (imputed)	N
604	chr6_qbl_hap6	2531105	2531106	rs34794906	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	6p21.33	HLA-C	rs34794906-C	0.2643	2E-23		0.04089973	[0.033-0.049] unit increase	Affymetrix [~ 2500000] (imputed)	N
604	chr6_qbl_hap6	2531562	2531563	rs9264638	23417110	Tin A	2013-02-16	Hum Genet	Genome-wide association study identified the human leukocyte antigen region as a novel locus for plasma beta-2 microglobulin.	Beta-2 microglubulin plasma levels	6,728 European ancestry individuals		6p21.33	HLA-C	rs9264638-A	0.58	2E-23		0.04	[0.032-0.048] unit decrease	Affymetrix [2500000] (imputed)	N
604	chr6_qbl_hap6	2531566	2531567	rs9264639	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	6p21.33	HLA-C	rs9264639-C	0.8898	2E-8		5.601	NR z score decrease	Illumina [26237160] (imputed)	N
604	chr6_qbl_hap6	2531734	2531735	rs9264642	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-C	rs9264642-T	NR	7E-14		0.0238148	[0.018-0.03] unit decrease	Affymetrix [323858] (imputed)	N
604	chr6_qbl_hap6	2531734	2531735	rs9264642	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HLA-C	rs9264642-T	NR	4E-12		0.0220978	[0.016-0.028] unit decrease	Affymetrix [127266] (imputed)	N
604	chr6_qbl_hap6	2532293	2532294	rs1065406	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	6p21.33	HLA-C	rs1065406-T	0.026891	1E-10		0.048755113	[0.034-0.064] unit increase	Affymetrix [93095623] (imputed)	N
604	chr6_qbl_hap6	2532301	2532302	rs2308575	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	6p21.33		rs2308575-T	NR	1E-224		0.0839	[0.079-0.089] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
604	chr6_qbl_hap6	2532301	2532302	rs2308575	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	White blood cell count	8,825 African American individuals, 18,251 Hispanic/Latino individuals, 543 Asian ancestry individuals, 606 Native American ancestry individuals, 383 individuals	NA	6p21.33	NR	rs2308575-?	NR	9E-7		0.01349677	[0.0081-0.0189] unit increase	Illumina [30613845] (imputed)	N
604	chr6_qbl_hap6	2532472	2532473	rs9264664	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Adrenomedullin levels	21,758 European ancestry individuals	9,173 individuals	6p21.33		rs9264664-T	0.67	2E-12		0.0668	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
604	chr6_qbl_hap6	2532536	2532537	rs9264666	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs9264666-G	NR	6E-11		0.0183937	[0.013-0.024] unit increase	Affymetrix [321016] (imputed)	N
604	chr6_qbl_hap6	2532545	2532546	rs17879195	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-C	rs17879195-T	NR	3E-10		0.0253256	[0.017-0.033] unit decrease	Affymetrix [323123] (imputed)	N
604	chr6_qbl_hap6	2532670	2532671	rs41543814	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-C	rs41543814-T	NR	7E-11		0.0205232	[0.014-0.027] unit increase	Affymetrix [323858] (imputed)	N
604	chr6_qbl_hap6	2532670	2532671	rs41543814	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HLA-C	rs41543814-T	NR	7E-10		0.0194382	[0.013-0.026] unit increase	Affymetrix [127266] (imputed)	N
604	chr6_qbl_hap6	2532689	2532690	rs28626310	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs28626310-G	NR	4E-12		0.0245555	[0.018-0.031] unit decrease	Affymetrix [319769] (imputed)	N
604	chr6_qbl_hap6	2532689	2532690	rs28626310	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-C	rs28626310-G	NR	3E-11		0.0236059	[0.017-0.031] unit decrease	Affymetrix [319769] (imputed)	N
604	chr6_qbl_hap6	2532689	2532690	rs28626310	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HLA-C	rs28626310-G	NR	3E-10		0.0226589	[0.016-0.03] unit decrease	Affymetrix [321169] (imputed)	N
604	chr6_qbl_hap6	2532746	2532747	rs1050414	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Psoriasis vulgaris	206 East Asian ancestry cases, 172,289 East Asian ancestry controls	NA	6p21.33		rs1050414-G	0.029861158	6E-14		3.1940312	[2.36-4.03] unit increase	Illumina [13429050] (imputed)	N
604	chr6_qbl_hap6	2532758	2532759	rs1050420	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs1050420-T	NR	1E-11		0.0196904	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_qbl_hap6	2532758	2532759	rs1050420	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-C	rs1050420-T	NR	1E-10		0.0188138	[0.013-0.025] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_qbl_hap6	2532758	2532759	rs1050420	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs1050420-T	NR	2E-8		0.016265	[0.011-0.022] unit decrease	Affymetrix [321016] (imputed)	N
604	chr6_qbl_hap6	2532758	2532759	rs1050420	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8 on CD8+ T cell	3,113 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs1050420-T	0.57866	2E-15		0.2317	[0.18-0.29] unit increase	Illumina [18030777] (imputed)	N
604	chr6_qbl_hap6	2532758	2532759	rs1050420	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	6p21.33	HLA-C	rs1050420-T	0.371904	2E-15		0.020388147	[0.015-0.025] unit increase	Affymetrix [93095623] (imputed)	N
604	chr6_qbl_hap6	2532817	2532818	rs707911	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-C	rs707911-A	NR	1E-10		0.0201335	[0.014-0.026] unit decrease	Affymetrix [323858] (imputed)	N
604	chr6_qbl_hap6	2532817	2532818	rs707911	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HLA-C	rs707911-A	NR	2E-9		0.0186456	[0.013-0.025] unit decrease	Affymetrix [127266] (imputed)	N
604	chr6_qbl_hap6	2532817	2532818	rs707911	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-C	rs707911-A	NR	4E-19		0.027395	[0.021-0.033] unit increase	Affymetrix [323123] (imputed)	N
604	chr6_qbl_hap6	2532825	2532826	rs1050437	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gastric cancer	7,921 East Asian ancestry cases, 159,201 East Asian ancestry controls	NA	6p21.33		rs1050437-T	0.367701676	2E-10		0.1113395	[0.077-0.145] unit decrease	Illumina [13428249] (imputed)	N
604	chr6_qbl_hap6	2533061	2533062	rs2308527	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-C	rs2308527-G	NR	1E-10		0.0203077	[0.014-0.027] unit decrease	Affymetrix [323858] (imputed)	N
604	chr6_qbl_hap6	2533061	2533062	rs2308527	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HLA-C	rs2308527-G	NR	5E-9		0.0185054	[0.012-0.025] unit decrease	Affymetrix [127266] (imputed)	N
604	chr6_qbl_hap6	2533284	2533285	rs2524094	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GZMA	5,361 Icelandic ancestry individuals	NA	6p21.33		rs2524094-C	0.3792	4E-35		0.236005	[0.2-0.27] unit decrease	Illumina [7506463] (imputed)	N
604	chr6_qbl_hap6	2533284	2533285	rs2524094	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-C	rs2524094-C	NR	6E-17		0.0258625	[0.02-0.032] unit increase	Affymetrix [323123] (imputed)	N
604	chr6_qbl_hap6	2533303	2533304	rs2844622	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs2844622-A	NR	4E-23		0.0292963	[0.024-0.035] unit increase	Affymetrix [321016] (imputed)	N
604	chr6_qbl_hap6	2533666	2533667	rs2074488	23144326	Kim DK	2012-11-09	Am J Respir Crit Care Med	Genome-wide association analysis of blood biomarkers in chronic obstructive pulmonary disease.	Chronic obstructive pulmonary disease-related biomarkers	Up to 1,951 European ancestry smokers	NA	6p21.33	HLA-C	rs2074488-T	0.13	2E-10	(SP-D)			Illumina [588352]	N
604	chr6_qbl_hap6	2533714	2533715	rs9357121	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.33		rs9357121-T	0.966	9E-15				Affymetrix [10369434] (imputed)	N
604	chr6_qbl_hap6	2533714	2533715	rs9357121	26582766	Lu X	2015-11-18	Circ Cardiovasc Genet	Genetic Susceptibility to Lipid Levels and Lipid Change Over Time and Risk of Incident Hyperlipidemia in Chinese Populations.	LDL cholesterol	8,344 Han Chinese ancestry individuals	14,739 Han Chinese ancestry individuals	6p21.33	HLA-C	rs9357121-T	0.85	3E-10		1.842	[1.25-2.43] unit increase	Affymetrix, Illumina [2573667] (imputed)	N
604	chr6_qbl_hap6	2533714	2533715	rs9357121	26582766	Lu X	2015-11-18	Circ Cardiovasc Genet	Genetic Susceptibility to Lipid Levels and Lipid Change Over Time and Risk of Incident Hyperlipidemia in Chinese Populations.	Cholesterol, total	8,344 Han Chinese ancestry individuals	14,739 Han Chinese ancestry individuals	6p21.33	HLA-C	rs9357121-T	0.85	2E-10		2.062	[1.42-2.71] unit increase	Affymetrix, Illumina [2573667] (imputed)	N
604	chr6_qbl_hap6	2533870	2533871	rs4361609	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	6p21.33	HLA-C, USP8P1	rs4361609-C	0.120687	1E-47		0.05005804	[0.043-0.057] unit decrease	Affymetrix [93095623] (imputed)	N
604	chr6_qbl_hap6	2533947	2533948	rs2249741	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs2249741-A	NR	1E-14		0.0216601	[0.016-0.027] unit decrease	Affymetrix [319769] (imputed)	N
604	chr6_qbl_hap6	2533947	2533948	rs2249741	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-C	rs2249741-A	NR	3E-13		0.0205289	[0.015-0.026] unit decrease	Affymetrix [319769] (imputed)	N
604	chr6_qbl_hap6	2533947	2533948	rs2249741	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs2249741-A	NR	1E-11		0.0190915	[0.014-0.025] unit increase	Affymetrix [321016] (imputed)	N
604	chr6_qbl_hap6	2533947	2533948	rs2249741	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HLA-C	rs2249741-A	NR	4E-13		0.0206435	[0.015-0.026] unit decrease	Affymetrix [321169] (imputed)	N
604	chr6_qbl_hap6	2533956	2533957	rs2249742	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large LDL	115,082 European ancestry individuals	NA	6p21.33		rs2249742-C	0.555622	3E-9		0.0244495	[0.016-0.033] unit decrease	NR [11722792] (imputed)	N
604	chr6_qbl_hap6	2533956	2533957	rs2249742	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in LDL	115,082 European ancestry individuals	NA	6p21.33		rs2249742-C	0.555622	2E-9		0.0247133	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
604	chr6_qbl_hap6	2533956	2533957	rs2249742	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large LDL	115,082 European ancestry individuals	NA	6p21.33		rs2249742-C	0.555622	2E-8		0.0230779	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
604	chr6_qbl_hap6	2533956	2533957	rs2249742	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in LDL	115,082 European ancestry individuals	NA	6p21.33		rs2249742-C	0.555622	2E-8		0.0234686	[0.015-0.032] unit decrease	NR [11722792] (imputed)	N
604	chr6_qbl_hap6	2533956	2533957	rs2249742	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	LDL cholesterol levels	115,082 European ancestry individuals	NA	6p21.33		rs2249742-C	0.555622	3E-9		0.0245814	[0.016-0.033] unit decrease	NR [11722792] (imputed)	N
604	chr6_qbl_hap6	2533956	2533957	rs2249742	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large LDL	115,082 European ancestry individuals	NA	6p21.33		rs2249742-C	0.555622	8E-10		0.025273	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
604	chr6_qbl_hap6	2533956	2533957	rs2249742	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large LDL	115,082 European ancestry individuals	NA	6p21.33		rs2249742-C	0.555622	4E-9		0.0242248	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
604	chr6_qbl_hap6	2533956	2533957	rs2249742	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs2249742-C	0.559	5E-180				Affymetrix [10369434] (imputed)	N
604	chr6_qbl_hap6	2533956	2533957	rs2249742	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p21.33	HLA-C, USP8P1	rs2249742-T	0.441322	3E-27		0.03629834	[0.03-0.043] unit increase	Affymetrix [93095623] (imputed)	N
604	chr6_qbl_hap6	2533956	2533957	rs2249742	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	6p21.33	HLA-C, USP8P1	rs2249742-T	0.441347	6E-25		0.026632145	[0.022-0.032] unit increase	Affymetrix [93095623] (imputed)	N
604	chr6_qbl_hap6	2533956	2533957	rs2249742	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.33	HLA-C, USP8P1	rs2249742-T	0.441398	2E-70		0.049990416	[0.044-0.056] unit increase	Affymetrix [93095623] (imputed)	N
604	chr6_qbl_hap6	2533956	2533957	rs2249742	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	6p21.33	NR	rs2249742-T	0.448909	4E-405		0.079592	[0.076-0.083] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
604	chr6_qbl_hap6	2533956	2533957	rs2249742	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p21.33	NR	rs2249742-T	0.465758	6E-421				Affymetrix, Illumina [23472807] (imputed)	N
604	chr6_qbl_hap6	2533956	2533957	rs2249742	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	White blood cell count	8,825 African American individuals, 18,251 Hispanic/Latino individuals, 543 Asian ancestry individuals, 606 Native American ancestry individuals, 383 individuals	NA	6p21.33	NR	rs2249742-?	NR	2E-7		0.01238585	[0.0077-0.0171] unit increase	Illumina [30613845] (imputed)	N
604	chr6_qbl_hap6	2533956	2533957	rs2249742	28158719	Jain D	2017-02-01	Hum Mol Genet	Genome-wide association of white blood cell counts in Hispanic/Latino Americans: the Hispanic Community Health Study/Study of Latinos.	White blood cell count (lymphocyte)	up to 11,809 Hispanic/Latino American individuals	up to 7,200 Hispanic/Latino American individuals	6p21.33	HLA-C	rs2249742-C	0.486	4E-8		0.0219	[0.014-0.03] unit decrease	Illumina [27887661] (imputed)	N
604	chr6_qbl_hap6	2533956	2533957	rs2249742	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	6p21.33	HLA-C, USP8P1	rs2249742-T	0.4405	5E-71		0.06448932	[0.057-0.072] unit increase	Affymetrix [~ 2500000] (imputed)	N
604	chr6_qbl_hap6	2534107	2534108	rs9264681	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs9264681-C	NR	1E-13		0.0225581	[0.017-0.029] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_qbl_hap6	2534107	2534108	rs9264681	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-C	rs9264681-C	NR	3E-13		0.0223033	[0.016-0.028] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_qbl_hap6	2534107	2534108	rs9264681	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-C	rs9264681-C	NR	2E-11		0.0221737	[0.016-0.029] unit decrease	Affymetrix [323123] (imputed)	N
604	chr6_qbl_hap6	2534107	2534108	rs9264681	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HLA-C	rs9264681-C	NR	4E-10		0.0192801	[0.013-0.025] unit increase	Affymetrix [321169] (imputed)	N
604	chr6_qbl_hap6	2534267	2534268	rs5010528	28062682	Carr DF	2017-01-05	J Antimicrob Chemother	Genome-wide association study of nevirapine hypersensitivity in a sub-Saharan African HIV-infected population.	Nevirapine-induced hypersensitivity in HIV (Stevens-Johnson syndrome or toxic epidermal necrosis)	51 Sub-saharan African ancestry cases, 182 Sub-saharan African ancestry controls	11 Sub-Saharan African ancestry cases, 27 African ancestry cases, 60 Sub-Saharan African ancestry controls, 8 African ancestry controls	6p21.33	HLA-C	rs5010528-G	0.14	8E-8		4.84	[2.71-8.61]	Illumina [14218511] (imputed)	N
604	chr6_qbl_hap6	2534326	2534327	rs2523599	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs2523599-C	NR	1E-21		0.0275701	[0.022-0.033] unit decrease	Affymetrix [319769] (imputed)	N
604	chr6_qbl_hap6	2534326	2534327	rs2523599	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-C	rs2523599-C	NR	7E-20		0.0263436	[0.021-0.032] unit decrease	Affymetrix [319769] (imputed)	N
604	chr6_qbl_hap6	2534326	2534327	rs2523599	33608531	Wu Y	2021-02-19	Nat Commun	GWAS of peptic ulcer disease implicates Helicobacter pylori infection, other gastrointestinal disorders and depression.	Irritable bowel syndrome	28,518 European ancestry cases, 426,803 European ancestry controls	NA	6p21.33	HLA-C	rs2523599-C	0.39	4E-8		0.95		NR [8546065] (imputed)	N
604	chr6_qbl_hap6	2534343	2534344	rs13191343	20953186	Huffmeier U	2010-10-17	Nat Genet	Common variants at TRAF3IP2 are associated with susceptibility to psoriatic arthritis and psoriasis.	Psoriatic arthritis	572 European ancestry cases, 888 European ancestry controls	Up to 1,761 European ancestry cases, 3,727 European ancestry controls	6p21.33	HLA-C	rs13191343-T	0.13	2E-72		2.37	[2.16-2.61]	Affymetrix [1585307] (imputed)	N
604	chr6_qbl_hap6	2534416	2534417	rs6900444	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs6900444-T	NR	4E-11		0.0186301	[0.013-0.024] unit decrease	Affymetrix [321016] (imputed)	N
604	chr6_qbl_hap6	2534416	2534417	rs6900444	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-C	rs6900444-T	NR	2E-15		0.0243915	[0.018-0.03] unit decrease	Affymetrix [323123] (imputed)	N
604	chr6_qbl_hap6	2534416	2534417	rs6900444	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	6p21.33	RNU6-283P	rs6900444-?	NR	1E-38		0.0342	[0.029-0.039] unit increase	Affymetrix [5701386] (imputed)	N
604	chr6_qbl_hap6	2534504	2534505	rs6900323	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs6900323-G	NR	3E-10		0.022084	[0.015-0.029] unit decrease	Affymetrix [319769] (imputed)	N
604	chr6_qbl_hap6	2534504	2534505	rs6900323	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-C	rs6900323-G	NR	2E-9		0.0211782	[0.014-0.028] unit decrease	Affymetrix [319769] (imputed)	N
604	chr6_qbl_hap6	2534504	2534505	rs6900323	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-C	rs6900323-G	NR	2E-8		0.0215495	[0.014-0.029] unit increase	Affymetrix [323123] (imputed)	N
604	chr6_qbl_hap6	2534873	2534874	rs2524084	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	151,807 East Asian ancestry individuals	NA	6p21.33	NR	rs2524084-A	0.427051	1E-53		0.056526	[0.049-0.064] SD units increase	Affymetrix, Illumina [16710636] (imputed)	N
604	chr6_qbl_hap6	2534873	2534874	rs2524084	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	88,929 East Asian ancestry individuals	NA	6p21.33	NR	rs2524084-A	0.42316	2E-35		0.059309	[0.05-0.069] SD units increase	Affymetrix, Illumina [16289044] (imputed)	N
604	chr6_qbl_hap6	2534873	2534874	rs2524084	31375628	Tengvall K	2019-08-02	Proc Natl Acad Sci U S A	Molecular mimicry between Anoctamin 2 and Epstein-Barr virus nuclear antigen 1 associates with multiple sclerosis risk.	Anti-anoctamin 2 antibody levels	11,936 European ancestry individuals	NA	6p21.33	NR	rs2524084-G	NR	3E-6		0.048	[0.024-0.072] unit decrease	Illumina [615763]	N
604	chr6_qbl_hap6	2534995	2534996	rs2524082	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	6p21.33	HLA-C, USP8P1	rs2524082-T	0.56	4E-65		0.06130488	[0.054-0.068] unit decrease	Affymetrix [~ 2500000] (imputed)	N
604	chr6_qbl_hap6	2535293	2535294	rs7764413	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	USP8P1	rs7764413-C	NR	8E-11		0.0182807	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_qbl_hap6	2535293	2535294	rs7764413	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	USP8P1	rs7764413-C	NR	1E-9		0.0172073	[0.012-0.023] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_qbl_hap6	2535293	2535294	rs7764413	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p21.33	NR	rs7764413-C	0.463	2E-6	(IFNalpha_STAT1_of_CD8p_T)			Illumina [5084123] (imputed)	N
604	chr6_qbl_hap6	2535294	2535295	rs2524081	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p21.33	HLA-C	rs2524081-C		2E-19		0.03	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
604	chr6_qbl_hap6	2535294	2535295	rs2524081	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	6p21.33	HLA-C, USP8P1	rs2524081-C	0.1374	5E-11		0.03378154	[0.024-0.044] unit decrease	Affymetrix [~ 2500000] (imputed)	N
604	chr6_qbl_hap6	2535362	2535363	rs2844620	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	USP8P1	rs2844620-C	NR	4E-19		0.0254568	[0.02-0.031] unit decrease	Affymetrix [319769] (imputed)	N
604	chr6_qbl_hap6	2535362	2535363	rs2844620	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	USP8P1	rs2844620-C	NR	4E-11		0.0208679	[0.015-0.027] unit decrease	Affymetrix [323858] (imputed)	N
604	chr6_qbl_hap6	2535362	2535363	rs2844620	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	USP8P1	rs2844620-C	NR	3E-18		0.0247749	[0.019-0.03] unit decrease	Affymetrix [319769] (imputed)	N
604	chr6_qbl_hap6	2535362	2535363	rs2844620	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	USP8P1	rs2844620-C	NR	5E-10		0.0196514	[0.013-0.026] unit decrease	Affymetrix [127266] (imputed)	N
604	chr6_qbl_hap6	2535362	2535363	rs2844620	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	USP8P1	rs2844620-C	NR	9E-17		0.0239546	[0.018-0.03] unit decrease	Affymetrix [321169] (imputed)	N
604	chr6_qbl_hap6	2535385	2535386	rs2524079	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	6p21.33		rs2524079-A	NR	9E-270		0.0717	[0.068-0.076] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
604	chr6_qbl_hap6	2535385	2535386	rs2524079	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	82,810 East Asian ancestry individuals	NA	6p21.33		rs2524079-A	0.271529	6E-32		0.0612891	[0.051-0.072] unit increase	Illumina [13467171] (imputed)	N
604	chr6_qbl_hap6	2535385	2535386	rs2524079	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	6p21.33		rs2524079-A	NR	3E-162		0.0594	[0.055-0.064] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
604	chr6_qbl_hap6	2535385	2535386	rs2524079	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.33		rs2524079-G	0.583	4E-109				Affymetrix [10369434] (imputed)	N
604	chr6_qbl_hap6	2535385	2535386	rs2524079	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p21.33		rs2524079-G	0.583	2E-76				Affymetrix [10369434] (imputed)	N
604	chr6_qbl_hap6	2535385	2535386	rs2524079	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (lymphocyte)	21,347 Hispanic or Latin American individuals	NA	6p21.33		rs2524079-A	0.5566	1E-8		0.0648	[0.042-0.087] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
604	chr6_qbl_hap6	2535385	2535386	rs2524079	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	21,347 Hispanic or Latin American individuals	NA	6p21.33		rs2524079-A	0.5537	3E-10		0.0627	[0.043-0.082] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
604	chr6_qbl_hap6	2535385	2535386	rs2524079	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	USP8P1	rs2524079-A	NR	6E-11		0.0186395	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_qbl_hap6	2535385	2535386	rs2524079	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	USP8P1	rs2524079-A	NR	4E-10		0.0178594	[0.012-0.023] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_qbl_hap6	2535385	2535386	rs2524079	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	USP8P1	rs2524079-A	NR	7E-9		0.0164819	[0.011-0.022] unit decrease	Affymetrix [321016] (imputed)	N
604	chr6_qbl_hap6	2535385	2535386	rs2524079	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	USP8P1	rs2524079-A	NR	1E-9		0.0175752	[0.012-0.023] unit increase	Affymetrix [321169] (imputed)	N
604	chr6_qbl_hap6	2535385	2535386	rs2524079	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	6p21.33	HLA-C, USP8P1	rs2524079-A	0.417269	1E-31		0.027049404	[0.023-0.032] unit increase	Affymetrix [93095623] (imputed)	N
604	chr6_qbl_hap6	2535385	2535386	rs2524079	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p21.33	NR	rs2524079-A	0.398304	1E-51				Affymetrix, Illumina [19905671] (imputed)	N
604	chr6_qbl_hap6	2535385	2535386	rs2524079	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	6p21.33	NR	rs2524079-A	0.419059	5E-51		0.031209	[0.027-0.035] SD unit increase	Affymetrix, Illumina [50036608] (imputed)	N
604	chr6_qbl_hap6	2535385	2535386	rs2524079	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	White blood cell count	8,825 African American individuals, 18,251 Hispanic/Latino individuals, 543 Asian ancestry individuals, 606 Native American ancestry individuals, 383 individuals	NA	6p21.33	NR	rs2524079-?	NR	1E-9		0.01475699	[0.01-0.019] unit increase	Illumina [30613845] (imputed)	N
604	chr6_qbl_hap6	2535385	2535386	rs2524079	28158719	Jain D	2017-02-01	Hum Mol Genet	Genome-wide association of white blood cell counts in Hispanic/Latino Americans: the Hispanic Community Health Study/Study of Latinos.	White blood cell count (lymphocyte)	up to 11,809 Hispanic/Latino American individuals	up to 7,200 Hispanic/Latino American individuals	6p21.33	NR	rs2524079-A	0.56	2E-8		0.016	[0.01-0.022] unit increase	Illumina [27887661] (imputed)	N
604	chr6_qbl_hap6	2535385	2535386	rs2524079	28158719	Jain D	2017-02-01	Hum Mol Genet	Genome-wide association of white blood cell counts in Hispanic/Latino Americans: the Hispanic Community Health Study/Study of Latinos.	White blood cell count	up to 11,809 Hispanic/Latino American individuals	up to 7,200 Hispanic/Latino American individuals	6p21.33	HLA-C	rs2524079-G	0.556	2E-8		0.213	[0.21-0.22] unit decrease	Illumina [27887661] (imputed)	N
604	chr6_qbl_hap6	2535385	2535386	rs2524079	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	6p21.33	HLA-C, USP8P1	rs2524079-A	0.4171	2E-126		0.08687249	[0.08-0.094] unit increase	Affymetrix [~ 2500000] (imputed)	N
604	chr6_qbl_hap6	2535385	2535386	rs2524079	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	6p21.33	HLA-C, USP8P1	rs2524079-A	0.4168	6E-68		0.06325533	[0.056-0.07] unit increase	Affymetrix [~ 2500000] (imputed)	N
604	chr6_qbl_hap6	2535385	2535386	rs2524079	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	6p21.33	HLA-C, USP8P1	rs2524079-A	0.4168	2E-68		0.06352314	[0.056-0.071] unit increase	Affymetrix [~ 2500000] (imputed)	N
604	chr6_qbl_hap6	2535385	2535386	rs2524079	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	6p21.33	HLA-C, USP8P1	rs2524079-A	0.4168	1E-67		0.0630379	[0.056-0.07] unit increase	Affymetrix [~ 2500000] (imputed)	N
604	chr6_qbl_hap6	2535385	2535386	rs2524079	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	6p21.33	HLA-C, USP8P1	rs2524079-A	0.4168	9E-69		0.06375719	[0.057-0.071] unit increase	Affymetrix [~ 2500000] (imputed)	N
604	chr6_qbl_hap6	2535385	2535386	rs2524079	21738480	Nalls MA	2011-07-01	PLoS Genet	Multiple loci are associated with white blood cell phenotypes.	White blood cell count	19,509 European ancestry individuals	11,823 European ancestry individuals	6p21.33	PSORS1C3, HCG27, HLA-C, HLA-B	rs2524079-A		1E-11	(Lymphocytes)	0.0148	[0.010-0.019] unit increase	Affymetrix, Illumina [> 2400000] (imputed)	N
604	chr6_qbl_hap6	2535402	2535403	rs12111032	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p21.33	HLA-C, HLA-B	rs12111032-G	0.24	1E-9	(EA)	2.32	[1.76-3.06]	Illumina [up to 547389]	N
604	chr6_qbl_hap6	2535434	2535435	rs2844619	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	USP8P1	rs2844619-C	NR	4E-24		0.0293712	[0.024-0.035] unit decrease	Affymetrix [319769] (imputed)	N
604	chr6_qbl_hap6	2535434	2535435	rs2844619	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	USP8P1	rs2844619-C	NR	8E-22		0.0278547	[0.022-0.034] unit decrease	Affymetrix [319769] (imputed)	N
604	chr6_qbl_hap6	2535434	2535435	rs2844619	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	USP8P1	rs2844619-C	NR	7E-20		0.0267656	[0.021-0.033] unit decrease	Affymetrix [321169] (imputed)	N
604	chr6_qbl_hap6	2535720	2535721	rs35989257	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	USP8P1	rs35989257-T	NR	6E-9		0.0198497	[0.013-0.027] unit decrease	Affymetrix [323123] (imputed)	N
604	chr6_qbl_hap6	2535720	2535721	rs35989257	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	USP8P1	rs35989257-T	NR	3E-9		0.0189318	[0.013-0.025] unit increase	Affymetrix [321169] (imputed)	N
604	chr6_qbl_hap6	2535850	2535851	rs2844616	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	USP8P1	rs2844616-C	NR	5E-17		0.0240156	[0.018-0.03] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_qbl_hap6	2535850	2535851	rs2844616	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	USP8P1	rs2844616-C	NR	3E-16		0.0233918	[0.018-0.029] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_qbl_hap6	2535850	2535851	rs2844616	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	6p21.33	USP8P1	rs2844616-C	NR	2E-9		0.0194652	[0.013-0.026] unit decrease	Affymetrix [323858] (imputed)	N
604	chr6_qbl_hap6	2535850	2535851	rs2844616	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	USP8P1	rs2844616-C	NR	7E-18		0.0267883	[0.021-0.033] unit decrease	Affymetrix [323123] (imputed)	N
604	chr6_qbl_hap6	2535942	2535943	rs12199223	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CD8A	5,365 Icelandic ancestry individuals	NA	6p21.33		rs12199223-A	0.08655	2E-61		0.542037	[0.48-0.61] unit increase	Illumina [7506463] (imputed)	N
604	chr6_qbl_hap6	2535942	2535943	rs12199223	30921485	Bejaoui Y	2019-03-28	Exp Dermatol	Genome-wide association study of psoriasis in an Egyptian population.	Psoriasis	215 Egyptian ancestry cases, 416 Egyptian ancestry controls	321 Egyptian ancestry cases, 253 Egyptian ancestry controls	6p21.33	HLA-C	rs12199223-?	NR	7E-18		2.49	[2.01-3.1]	Illumina [312245]	N
604	chr6_qbl_hap6	2535973	2535974	rs3134745	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	6p21.33	HLA-C, USP8P1	rs3134745-T	0.325625	5E-10		0.01714023	[0.012-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
604	chr6_qbl_hap6	2536558	2536559	rs9461680	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6p21.33		rs9461680-C	0.825202	3E-9		0.0310951	[0.021-0.041] unit increase	NR [11722792] (imputed)	N
604	chr6_qbl_hap6	2536558	2536559	rs9461680	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	6p21.33		rs9461680-C	0.825202	9E-11		0.032856	[0.023-0.043] unit increase	NR [11722792] (imputed)	N
604	chr6_qbl_hap6	2536570	2536571	rs9468911	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6p21.33		rs9468911-G	0.825215	1E-11		0.0349605	[0.025-0.045] unit decrease	NR [11722792] (imputed)	N
604	chr6_qbl_hap6	2536570	2536571	rs9468911	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6p21.33		rs9468911-G	0.825215	8E-12		0.0354702	[0.025-0.046] unit increase	NR [11722792] (imputed)	N
604	chr6_qbl_hap6	2536789	2536790	rs73390981	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	6p21.33		rs73390981-G	0.922	1E-33				Affymetrix [10369434] (imputed)	N
604	chr6_qbl_hap6	2536789	2536790	rs73390981	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	6p21.33	USP8P1	rs73390981-A	0.078064	3E-29		0.049712982	[0.041-0.058] unit increase	Affymetrix [93095623] (imputed)	N
604	chr6_qbl_hap6	2536826	2536827	rs13200569	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	6p21.33	USP8P1	rs13200569-A	0.285539	7E-13		0.01938597	[0.014-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
604	chr6_qbl_hap6	2537039	2537040	rs4141168	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	6p21.33		rs4141168-A	0.786459	2E-8		0.0267074	[0.017-0.036] unit increase	NR [11722792] (imputed)	N
604	chr6_qbl_hap6	2537041	2537042	rs2524076	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	USP8P1	rs2524076-G	NR	2E-14		0.0235806	[0.018-0.03] unit increase	Affymetrix [323123] (imputed)	N
604	chr6_qbl_hap6	2537041	2537042	rs2524076	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	USP8P1	rs2524076-G	NR	4E-15		0.0225429	[0.017-0.028] unit decrease	Affymetrix [321169] (imputed)	N
604	chr6_qbl_hap6	2537095	2537096	rs3130696	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	6p21.33	MICB	rs3130696-?	NR	5E-10	(XS_VLDL_TG)	0.06374044	NR unit decrease	Illumina [609262]	N
604	chr6_qbl_hap6	2537095	2537096	rs3130696	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	6p21.33	MICB	rs3130696-?	NR	3E-6	(XS_VLDL_TG)	0.059096735	NR unit decrease	Illumina [609262]	N
604	chr6_qbl_hap6	2537106	2537107	rs3094680	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	6p21.33	HLA	rs3094680-T	0.601913	1E-8		1.05	[1.03-1.06]	NR [8126035] (imputed)	N
604	chr6_qbl_hap6	2538001	2538002	rs2524069	27327535	Laville V	2016-06-21	Pigment Cell Melanoma Res	A genome-wide association study in Caucasian women suggests the involvement of HLA genes in the severity of facial solar lentigines.	Severity of facial solar lentigines	502 French ancestry individuals		6p21.33	USP8P1, HLA-C	rs2524069-T	0.13	3E-7				Illumina [795063]	N
604	chr6_qbl_hap6	2538172	2538173	rs6919908	26007630	Swaminathan B	2015-05-26	Nat Commun	Variants in ELL2 influencing immunoglobulin levels associate with multiple myeloma.	Multiple myeloma and monoclonal gammopathy	2,194 European ancestry multiple myeloma cases, 251 European ancestry monoclonal gammopathy cases, 294,390 European ancestry controls	586 European ancestry multiple myeloma cases, 2,111 European ancestry controls	6p21.33	PSORS1C2, HLA	rs6919908-T	0.23	6E-10		0.23	[NR] unit increase	Illumina [12100000] (imputed)	N
604	chr6_qbl_hap6	2538172	2538173	rs6919908	26007630	Swaminathan B	2015-05-26	Nat Commun	Variants in ELL2 influencing immunoglobulin levels associate with multiple myeloma.	Multiple myeloma	2,194 European ancestry cases, 222,555 European ancestry controls	586 European ancestry cases, 2,111 European ancestry controls	6p21.33	PSORS1C2, HLA	rs6919908-T	0.23	4E-10		0.25	[NR] unit increase	Illumina [12100000] (imputed)	N
604	chr6_qbl_hap6	2539022	2539023	rs2524067	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p21.33	HLA-C, HLA-B	rs2524067-G	0.353	1E-25				Illumina [118177]	N
604	chr6_qbl_hap6	2540024	2540025	rs7383388	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6p21.33	RPL3P2	rs7383388-T	0.404081	1E-10		0.01745803	[0.012-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
604	chr6_qbl_hap6	2540404	2540405	rs2853946	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	USP8P1	rs2853946-T	NR	2E-9		0.0200045	[0.014-0.026] unit decrease	Affymetrix [323123] (imputed)	N
604	chr6_qbl_hap6	2540404	2540405	rs2853946	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	USP8P1	rs2853946-T	NR	5E-11		0.0201772	[0.014-0.026] unit increase	Affymetrix [321169] (imputed)	N
604	chr6_qbl_hap6	2540404	2540405	rs2853946	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	119,629 East Asian ancestry individuals	NA	6p21.33	NR	rs2853946-A	0.728288	8E-12		0.03126	[0.022-0.04] SD units decrease	Affymetrix, Illumina [16286228] (imputed)	N
604	chr6_qbl_hap6	2540404	2540405	rs2853946	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	White blood cell count	8,825 African American individuals, 18,251 Hispanic/Latino individuals, 543 Asian ancestry individuals, 606 Native American ancestry individuals, 383 individuals	NA	6p21.33	NR	rs2853946-?	NR	8E-7		0.0119414	[0.0072-0.0167] unit increase	Illumina [30613845] (imputed)	N
604	chr6_qbl_hap6	2540404	2540405	rs2853946	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.33	USP8P1	rs2853946-A	0.6837	8E-12		0.0519	[0.037-0.067] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
604	chr6_qbl_hap6	2540404	2540405	rs2853946	25096241	Keller MF	2014-08-05	Hum Mol Genet	Trans-ethnic meta-analysis of white blood cell phenotypes.	White blood cell count	16,843 Japanese ancestry individuals, 19,509 European ancestry individuals, 16,388 African American individuals	NA	6p21.33	HLA-B	rs2853946-A	0.717	8E-6	(Japanese)	0.013	[0.0071-0.0189] unit decrease	Illumina [NR] (imputed)	N
604	chr6_qbl_hap6	2540404	2540405	rs2853946	25096241	Keller MF	2014-08-05	Hum Mol Genet	Trans-ethnic meta-analysis of white blood cell phenotypes.	White blood cell count	16,843 Japanese ancestry individuals, 19,509 European ancestry individuals, 16,388 African American individuals	NA	6p21.33	HLA-B	rs2853946-A	0.348	1E-8	(EA)	0.017	[0.011-0.023] unit decrease	Illumina [NR] (imputed)	N
604	chr6_qbl_hap6	2540404	2540405	rs2853946	25096241	Keller MF	2014-08-05	Hum Mol Genet	Trans-ethnic meta-analysis of white blood cell phenotypes.	White blood cell count	16,843 Japanese ancestry individuals, 19,509 European ancestry individuals, 16,388 African American individuals	NA	6p21.33	HLA-B	rs2853946-?	NR	3E-14		0.0139	[0.010-0.017] unit decrease	Illumina [NR] (imputed)	N
604	chr6_qbl_hap6	2540607	2540608	rs112262437	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.33	NR	rs112262437-C	0.994	2E-27	(conditional)	6.006	[5.68-6.33]	Illumina [11270530] (imputed)	N
604	chr6_qbl_hap6	2540615	2540616	rs2844608	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	RPL3P2	rs2844608-T	NR	3E-19		0.0260453	[0.02-0.032] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_qbl_hap6	2540615	2540616	rs2844608	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	RPL3P2	rs2844608-T	NR	2E-18		0.0254038	[0.02-0.031] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_qbl_hap6	2540615	2540616	rs2844608	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4 on CD28+ CD4+ T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs2844608-T	0.45698	9E-10		0.1884	[0.13-0.25] unit increase	Illumina [17954496] (imputed)	N
604	chr6_qbl_hap6	2541072	2541073	rs2853943	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	RPL3P2	rs2853943-C	NR	2E-12		0.0232178	[0.017-0.03] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_qbl_hap6	2541072	2541073	rs2853943	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	RPL3P2	rs2853943-C	NR	3E-12		0.0229712	[0.017-0.029] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_qbl_hap6	2541633	2541634	rs2844606	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	RPL3P2	rs2844606-G	NR	2E-9		0.0190067	[0.013-0.025] unit increase	Affymetrix [323858] (imputed)	N
604	chr6_qbl_hap6	2541633	2541634	rs2844606	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	RPL3P2	rs2844606-G	NR	5E-8		0.017266	[0.011-0.023] unit increase	Affymetrix [127266] (imputed)	N
604	chr6_qbl_hap6	2541633	2541634	rs2844606	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	RPL3P2	rs2844606-G	NR	1E-13		0.021298	[0.016-0.027] unit increase	Affymetrix [321169] (imputed)	N
604	chr6_qbl_hap6	2541633	2541634	rs2844606	33204752	Butler-Laporte G	2020-09-24	Open Forum Infect Dis	Genetic Determinants of Antibody-Mediated Immune Responses to Infectious Diseases Agents: A Genome-Wide and HLA Association Study.	Anti-human herpes virus 6 IE1A IgG seropositivity	8,735 White British ancestry individuals	NA	6p21.33	RPL3P2	rs2844606-A	0.584	1E-8		0.1	unit decrease	NR [25472218] (imputed)	N
604	chr6_qbl_hap6	2541633	2541634	rs2844606	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	6p21.33	RPL3P2	rs2844606-G	0.417187	3E-23		0.025892606	[0.021-0.031] unit increase	Affymetrix [93095623] (imputed)	N
604	chr6_qbl_hap6	2541635	2541636	rs9264758	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p21.33	HLA-C	rs9264758-G	0.866	3E-7		0.082	[0.051-0.113] unit increase	Affymetrix, Illumina [7374092] (imputed)	N
604	chr6_qbl_hap6	2541792	2541793	rs2844605	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	RPL3P2	rs2844605-C	NR	7E-16		0.0250208	[0.019-0.031] unit decrease	Affymetrix [323123] (imputed)	N
604	chr6_qbl_hap6	2541879	2541880	rs9264759	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	93,063 East Asian ancestry individuals	NA	6p21.33		rs9264759-C	0.695944	2E-40		0.0639223	[0.055-0.073] unit decrease	Illumina [13470073] (imputed)	N
604	chr6_qbl_hap6	2542427	2542428	rs2853941	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	RPL3P2	rs2853941-C	NR	1E-9		0.0174735	[0.012-0.023] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_qbl_hap6	2542596	2542597	rs9264764	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	RPL3P2	rs9264764-C	NR	4E-9		0.0168291	[0.011-0.022] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_qbl_hap6	2542791	2542792	rs7766089	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	RPL3P2	rs7766089-G	NR	5E-19		0.0281143	[0.022-0.034] unit increase	Affymetrix [323123] (imputed)	N
604	chr6_qbl_hap6	2542791	2542792	rs7766089	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	RPL3P2	rs7766089-G	NR	2E-20		0.0271218	[0.021-0.033] unit decrease	Affymetrix [321169] (imputed)	N
604	chr6_qbl_hap6	2542930	2542931	rs2853940	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gastric cancer	1,029 European ancestry cases, 475,087 European ancestry controls, 7,921 East Asian ancestry cases, 159,201 East Asian ancestry controls	NA	6p21.33		rs2853940-C	NR	8E-12		0.1087	[0.078-0.14] unit increase	Affymetrix, Illumina [25843697] (imputed)	N
604	chr6_qbl_hap6	2542930	2542931	rs2853940	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	RPL3P2	rs2853940-C	NR	3E-17		0.0246751	[0.019-0.03] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_qbl_hap6	2542930	2542931	rs2853940	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	RPL3P2	rs2853940-C	NR	4E-16		0.0237957	[0.018-0.03] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_qbl_hap6	2543839	2543840	rs2853939	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	RPL3P2	rs2853939-T	NR	2E-28		0.033269	[0.027-0.039] unit increase	Affymetrix [323123] (imputed)	N
604	chr6_qbl_hap6	2545593	2545594	rs2524054	20045101	Ferreira MA	2009-12-31	Am J Hum Genet	Quantitative trait loci for CD4:CD8 lymphocyte ratio are associated with risk of type 1 diabetes and HIV-1 immune control.	CD8-positive T-lymphocyte count	2,538 European ancestry twins from 1,089 families	988 individuals from 550 families	6p21.33	HLA-B	rs2524054-A	0.32	6E-21		0.37	[0.31-0.43] SD increase	Illumina [529721]	N
604	chr6_qbl_hap6	2545593	2545594	rs2524054	20045101	Ferreira MA	2009-12-31	Am J Hum Genet	Quantitative trait loci for CD4:CD8 lymphocyte ratio are associated with risk of type 1 diabetes and HIV-1 immune control.	CD4:CD8 lymphocyte ratio	2,538 European ancestry twins from 1,089 families	988 individuals from 550 families	6p21.33	HLA-B	rs2524054-A	0.32	2E-28		0.37	[0.31-0.43] SD increase	Illumina [529721]	N
604	chr6_qbl_hap6	2546122	2546123	rs12191877	26626624	Stuart PE	2015-11-28	Am J Hum Genet	Genome-wide Association Analysis of Psoriatic Arthritis and Cutaneous Psoriasis Reveals Differences in Their Genetic Architecture.	Psoriatic arthritis	1,946 European ancestry cases, 4,934 European ancestry controls	up to 2,883 European ancestry cases, up to 14,179 European ancestry controls		HLA-C, HLA-B, HLA, MHC	rs12191877-T	NR	2E-99		2.416	NR	Illumina [11532644] (imputed)	N
604	chr6_qbl_hap6	2546122	2546123	rs12191877	20953188	Ellinghaus E	2010-10-17	Nat Genet	Genome-wide association study identifies a psoriasis susceptibility locus at TRAF3IP2.	Psoriasis	472 European ancestry cases, 1,146 European ancestry controls	2,668, European ancestry cases, 762 French Canadian founder population cases, 2,585 cases, 3,485 European ancestry controls, 994 French Canadian founder population controls, 2,412 controls		HLA-C	rs12191877-?	NR	4E-32		2.79	[2.35-3.33]	Illumina [2339118] (imputed)	N
604	chr6_qbl_hap6	2546122	2546123	rs12191877	19169254	Nair RP	2009-01-25	Nat Genet	Genome-wide scan reveals association of psoriasis with IL-23 and NF-kappaB pathways.	Psoriasis	1,359 European ancestry cases, 1,400 European ancestry controls	5,048 European ancestry cases, 5,041 European ancestry controls		HLA-C	rs12191877-T	0.15	1E-100		2.64	[NR]	Perlegen [~ 2500000] (imputed)	N
604	chr6_qbl_hap6	2547576	2547577	rs2853933	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	WASF5P	rs2853933-T	NR	5E-17		0.0264491	[0.02-0.033] unit decrease	Affymetrix [323858] (imputed)	N
604	chr6_qbl_hap6	2547576	2547577	rs2853933	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	WASF5P	rs2853933-T	NR	5E-15		0.0246973	[0.019-0.031] unit decrease	Affymetrix [127266] (imputed)	N
604	chr6_qbl_hap6	2548493	2548494	rs13214872	33385400	Patrick MT	2020-12-29	J Invest Dermatol	Causal relationship and shared genetic loci between psoriasis and type 2 diabetes through trans-disease meta-analysis.	Psoriasis or type 2 diabetes (trans-disease meta-analysis)	11,024 European ancestry psoriasis cases, 74,124 European ancestry diabetes cases, 840,342 European ancestry controls	NA		NR	rs13214872-G	NR	2E-302		1.67	NR	NR [8016731] (imputed)	N
604	chr6_qbl_hap6	2548926	2548927	rs114598080	32421744	Gzara C	2020-05-18	PLoS Pathog	Family-based genome-wide association study of leprosy in Vietnam.	Leprosy	1,749 Vietnamese ancestry cases	1,181 Vietnamese ancestry cases, 688 Vietnamese ancestry controls	6p21.33	HLA-C	rs114598080-A	0.1	9E-13		1.47	[1.46-1.48]	Illumina [5607170] (imputed)	N
604	chr6_qbl_hap6	2550993	2550994	rs2853928	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for VLDL particles	115,082 European ancestry individuals	NA	6p21.33		rs2853928-A	0.298678	8E-11		0.0272348	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
604	chr6_qbl_hap6	2550993	2550994	rs2853928	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	HLA-C, WASF5P, XXbac-BPG248L24.13, HLA-B, XXbac-BPG248L24.12, USP8P1, RPL3P2, XXbac-BPG248L24.10, MIR6891	rs2853928-A	0.2253521	3E-12	(EA, Granzyme A)	0.3627	[0.26-0.46] unit decrease	Affymetrix [509946]	N
604	chr6_qbl_hap6	2551872	2551873	rs2844594	34785669	Grosche S	2021-11-16	Nat Commun	Rare variant analysis in eczema identifies exonic variants in DUSP1, NOTCH4 and SLC9A4.	Eczema	20,016 European ancestry cases, 380,433 European ancestry controls	NA	6p21.33		rs2844594-A	0.1766	3E-14		1.12		Affymetrix, Illumina [9397031] (imputed)	N
604	chr6_qbl_hap6	2551872	2551873	rs2844594	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HVEM on naive CD8+ T cell	1,247 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs2844594-A	0.38517	2E-10		0.276	[0.19-0.36] unit decrease	Illumina [16410374] (imputed)	N
604	chr6_qbl_hap6	2552317	2552318	rs9468925	20526339	Quan C	2010-06-06	Nat Genet	Genome-wide association study for vitiligo identifies susceptibility loci at 6q27 and the MHC.	Vitiligo	1,117 Han Chinese ancestry cases, 1,429 Han Chinese ancestry controls	6,623 East Asian ancestry cases, 10,740 East Asian ancestry controls	6p21.33	HLA	rs9468925-?	0.617	2E-33		1.35	[1.28-1.41]	Illumina [493909]	N
604	chr6_qbl_hap6	2553051	2553052	rs2524163	27286809	Ligthart S	2016-06-10	BMC Genomics	Bivariate genome-wide association study identifies novel pleiotropic loci for lipids and inflammation.	C-reactive protein levels or triglyceride levels (pleiotropy)	65,000 individuals (C-reactive protein), 96,598 individuals (triglycerides)	NA	6p21.33	HLA-C	rs2524163-T	NR	8E-10				NR [25015711] (imputed)	N
604	chr6_qbl_hap6	2553600	2553601	rs115464798	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	6p21.33	WASF5P	rs115464798-A	0.056192	5E-21		0.049840536	[0.039-0.06] unit decrease	Affymetrix [93095623] (imputed)	N
604	chr6_qbl_hap6	2556252	2556253	rs2524147	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs2524147-G	0.814	8E-65				Affymetrix [10369434] (imputed)	N
604	chr6_qbl_hap6	2556981	2556982	rs2524143	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs2524143-C	0.736	2E-52	(Killer cell immunoglobulin-like receptor 2DS2, KIR2DS2.10428.1.3)	0.43	[0.37-0.49] unit decrease	Affymetrix [10572788] (imputed)	N
604	chr6_qbl_hap6	2556993	2556994	rs2524142	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	6p21.33		rs2524142-C	0.299755	1E-8		0.0256476	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
604	chr6_qbl_hap6	2556993	2556994	rs2524142	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	6p21.33		rs2524142-C	0.299755	8E-10		0.02748	[0.019-0.036] unit decrease	NR [11722792] (imputed)	N
604	chr6_qbl_hap6	2556993	2556994	rs2524142	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs2524142-G	0.734	3E-22	(cAMP-specific 3',5'-cyclic phosphodiesterase 4D, PDE4D.5255.22.3)	0.28	[0.22-0.34] unit increase	Affymetrix [10572788] (imputed)	N
604	chr6_qbl_hap6	2557222	2557223	rs2894207	27436580	Cui Q	2016-07-19	Hum Mol Genet	An extended genome-wide association study identifies novel susceptibility loci for nasopharyngeal carcinoma.	Nasopharyngeal carcinoma	1,583 Southern Chinese ancestry cases, 2,979 Southern Chinese ancestry controls	5,463 Southern Chinese ancestry cases, 5,591 Southern Chinese ancestry controls	6p21.33	NR	rs2894207-?	0.84	2E-19		1.96	[1.69-2.27]	Illumina [463250]	N
604	chr6_qbl_hap6	2557222	2557223	rs2894207	20512145	Bei JX	2010-05-30	Nat Genet	A genome-wide association study of nasopharyngeal carcinoma identifies three new susceptibility loci.	Nasopharyngeal carcinoma	1,583 Chinese ancestry cases, 1,894 Chinese ancestry controls	3,507 Chinese ancestry cases, 3,063 Chinese ancestry controls, 284  Chinese ancestry trios	6p21.33	HLA-C, HLA-B	rs2894207-?	0.82	3E-33		1.64	[1.52-1.75]	Illumina [464328]	N
604	chr6_qbl_hap6	2557272	2557273	rs114583506	33483693	Clements CC	2021-01-22	Mol Psychiatry	Genome-wide association study of patients with a severe major depressive episode treated with electroconvulsive therapy.	Major depressive episode treated with electroconvulsive therapy	2,725 European ancestry cases, 3,290 European ancestry controls	NA	6p21.33	HLA-C	rs114583506-?	NR	4E-8		0.5992	[0.42-0.78]	Illumina [NR] (imputed)	N
604	chr6_qbl_hap6	2557272	2557273	rs114583506	33483693	Clements CC	2021-01-22	Mol Psychiatry	Genome-wide association study of patients with a severe major depressive episode treated with electroconvulsive therapy.	Major depressive disorder and major depressive episode treated with electroconvulsive therapy	1,796 European ancestry cases, 3,290 European ancestry controls	NA	6p21.33	HLA-C	rs114583506-?	NR	1E-7		0.5845	[0.39-0.78]	Illumina [NR] (imputed)	N
604	chr6_qbl_hap6	2557598	2557599	rs2524139	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	XXbac-BPG248L24.13	rs2524139-C	0.734	2E-52	(Killer cell immunoglobulin-like receptor 2DS2, KIR2DS2.10428.1.3)	0.43	[0.37-0.49] unit decrease	Affymetrix [10572788] (imputed)	N
604	chr6_qbl_hap6	2557857	2557858	rs9380237	32558222	Okamura K	2020-06-18	Pigment Cell Melanoma Res	Genome-wide association study identifies CDH13 as a susceptibility gene for rhododendrol-induced leukoderma.	Leukoderma in response to rhododendrol	147 Japanese ancestry cases, 112 Japanese ancestry controls	NA	6p21.33	HLA-B, HLA-C	rs9380237-?	NR	8E-6		3.5714285	[1.96-6.25]	Illumina [1057565]	N
604	chr6_qbl_hap6	2557926	2557927	rs3094682	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	6p21.33	NR	rs3094682-C	0.8056	2E-23		0.0598	[0.048-0.072] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
604	chr6_qbl_hap6	2558588	2558589	rs55745121	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	6p21.33	XXbac-BPG248L24.13	rs55745121-C	0.00771999999999995	2E-12		0.103537746	[0.075-0.132] unit increase	Affymetrix [93095623] (imputed)	N
604	chr6_qbl_hap6	2558600	2558601	rs2524129	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2524129-C	0.298408	4E-18		0.0377033	[0.029-0.046] unit decrease	NR [11722792] (imputed)	N
604	chr6_qbl_hap6	2558600	2558601	rs2524129	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small LDL	115,082 European ancestry individuals	NA	6p21.33		rs2524129-C	0.298408	2E-16		0.0359658	[0.027-0.045] unit decrease	NR [11722792] (imputed)	N
604	chr6_qbl_hap6	2558600	2558601	rs2524129	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2524129-C	0.298408	5E-15		0.0341259	[0.026-0.043] unit decrease	NR [11722792] (imputed)	N
604	chr6_qbl_hap6	2558600	2558601	rs2524129	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium LDL	115,082 European ancestry individuals	NA	6p21.33		rs2524129-C	0.298408	5E-17		0.036788	[0.028-0.045] unit decrease	NR [11722792] (imputed)	N
604	chr6_qbl_hap6	2558600	2558601	rs2524129	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2524129-C	0.298408	3E-14		0.0327886	[0.024-0.041] unit decrease	NR [11722792] (imputed)	N
604	chr6_qbl_hap6	2558600	2558601	rs2524129	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total triglycerides levels	115,082 European ancestry individuals	NA	6p21.33		rs2524129-C	0.298408	3E-15		0.0342705	[0.026-0.043] unit decrease	NR [11722792] (imputed)	N
604	chr6_qbl_hap6	2558600	2558601	rs2524129	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2524129-C	0.298408	2E-11		0.0290519	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
604	chr6_qbl_hap6	2558727	2558728	rs2246954	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.13	rs2246954-A	NR	2E-8		0.0159083	[0.01-0.021] unit decrease	Affymetrix [321114] (imputed)	N
604	chr6_qbl_hap6	2558727	2558728	rs2246954	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.13	rs2246954-A	NR	1E-9		0.0195845	[0.013-0.026] unit increase	Affymetrix [323858] (imputed)	N
604	chr6_qbl_hap6	2558955	2558956	rs2247056	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-3 fatty acid levels	115,006 European ancestry individuals	NA	6p21.33		rs2247056-T	0.296693	2E-16		0.0356403	[0.027-0.044] unit decrease	NR [11722792] (imputed)	N
604	chr6_qbl_hap6	2558955	2558956	rs2247056	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2247056-T	0.296684	6E-12		0.0298649	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
604	chr6_qbl_hap6	2558955	2558956	rs2247056	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.33	NR	rs2247056-T	NR	2E-14		0.034	unit decrease	Affymetrix [at least 7091467] (imputed)	N
604	chr6_qbl_hap6	2558955	2558956	rs2247056	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.33	NR	rs2247056-T	0.249	1E-12	(EA)	0.034	unit decrease	Affymetrix [at least 7091467] (imputed)	N
604	chr6_qbl_hap6	2558955	2558956	rs2247056	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.33	NR	rs2247056-T	NR	2E-18		0.043	unit decrease	Affymetrix [at least 7091467] (imputed)	N
604	chr6_qbl_hap6	2558955	2558956	rs2247056	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.33	NR	rs2247056-T	0.249	2E-17	(EA)	0.045	unit decrease	Affymetrix [at least 7091467] (imputed)	N
604	chr6_qbl_hap6	2558955	2558956	rs2247056	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.33	NR	rs2247056-T	NR	2E-8		0.028	unit decrease	Affymetrix [at least 7091467] (imputed)	N
604	chr6_qbl_hap6	2558955	2558956	rs2247056	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.33	NR	rs2247056-T	0.249	6E-8	(EA)	0.029	unit decrease	Affymetrix [at least 7091467] (imputed)	N
604	chr6_qbl_hap6	2558955	2558956	rs2247056	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	6p21.33	HLA-C, HLA-B	rs2247056-T	0.27	4E-12		1.18	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
604	chr6_qbl_hap6	2558955	2558956	rs2247056	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	Triglycerides	96,598 European ancestry individuals	NA	6p21.33	HLA	rs2247056-T	0.25	2E-15		2.99	[2.17-3.81] mg/dL decrease	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
604	chr6_qbl_hap6	2559202	2559203	rs2853923	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.13	rs2853923-G	NR	4E-8		0.0175506	[0.011-0.024] unit decrease	Affymetrix [323858] (imputed)	N
604	chr6_qbl_hap6	2559506	2559507	rs17192526	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.13	rs17192526-C	NR	1E-9		0.0195758	[0.013-0.026] unit increase	Affymetrix [323858] (imputed)	N
604	chr6_qbl_hap6	2559506	2559507	rs17192526	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.13	rs17192526-C	NR	8E-9		0.0185107	[0.012-0.025] unit increase	Affymetrix [127266] (imputed)	N
604	chr6_qbl_hap6	2559506	2559507	rs17192526	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.13	rs17192526-C	NR	2E-18		0.0275913	[0.021-0.034] unit decrease	Affymetrix [323123] (imputed)	N
604	chr6_qbl_hap6	2559555	2559556	rs4406273	26626624	Stuart PE	2015-11-28	Am J Hum Genet	Genome-wide Association Analysis of Psoriatic Arthritis and Cutaneous Psoriasis Reveals Differences in Their Genetic Architecture.	Psoriasis vulgaris	4,007 European ancestry cases, 4,934 European ancestry controls	up to 9,075 European ancestry cases, up to European ancestry 12,726 controls	6p21.33	HLA-B, HLA-C	rs4406273-A	NR	2E-312		3.38	NR	Illumina [up to 11532644] (imputed)	N
604	chr6_qbl_hap6	2559555	2559556	rs4406273	23143594	Tsoi LC	2012-12-01	Nat Genet	Identification of 15 new psoriasis susceptibility loci highlights the role of innate immunity.	Psoriasis	10,588 European ancestry cases, 22,806 European ancestry controls	NA	6p21.33	HLA-B, HLA-C	rs4406273-A	0.092	5E-723		4.32		Illumina [111236] (imputed)	N
604	chr6_qbl_hap6	2559582	2559583	rs2524095	31879980	German CA	2019-12-26	Genet Epidemiol	Ordered multinomial regression for genetic association analysis of ordinal phenotypes at Biobank scale.	Hypertension	30,822 British ancestry normal blood pressure individuals, 25,242 British ancestry elevated blood pressure individuals, 50,461 British ancestry stage 1 hypertension individuals, 75,286 British ancestry stage 2 hypertension individuals, 3,754 British ancestry hypertension crisis individuals	NA	6p21.33	LINC02571	rs2524095-?	NR	1E-9		0.03838402	NR unit increase	Affymetrix [464137]	N
604	chr6_qbl_hap6	2561401	2561402	rs28367631	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	WASF5P, HLA-C, XXbac-BPG248L24.10, USP8P1, RPL3P2, XXbac-BPG248L24.13	rs28367631-T	0.3457286	1E-15	(EA, MHC class I polypeptide-related sequence A)	0.3635	[0.28-0.45] unit decrease	Affymetrix [509946]	N
604	chr6_qbl_hap6	2561579	2561580	rs2524045	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.13	rs2524045-G	NR	7E-11		0.022607	[0.016-0.029] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_qbl_hap6	2562107	2562108	rs28367657	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.13	rs28367657-A	NR	1E-12		0.0243391	[0.018-0.031] unit decrease	Affymetrix [323123] (imputed)	N
604	chr6_qbl_hap6	2562638	2562639	rs9366778	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR		HLA-C	rs9366778-G	0.626619	3E-11		0.018043	[0.013-0.023] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
604	chr6_qbl_hap6	2562951	2562952	rs2844592	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gastric polyp	6,155 European ancestry cases, 341,871 European ancestry controls, 1,337 East Asian ancestry cases, 158,249 East Asian ancestry controls	NA	6p21.33		rs2844592-G	NR	4E-8		0.0998	[0.064-0.135] unit increase	Affymetrix, Illumina [20456140] (imputed)	N
604	chr6_qbl_hap6	2563158	2563159	rs114985235	26891255	Jung ES	2016-02-18	Inflamm Bowel Dis	HLA-C*01 is a Risk Factor for Crohn's Disease.	Crohn's disease	275 Korean ancestry cases, 2,369 Korean ancestry controls	242 Korean ancestry cases, 1,066 Korean ancestry controls	6p21.33	HLA-B, HLA-C	rs114985235-C	0.12	9E-23		2.25	[1.91-2.66]	Affymetrix [3387207] (imputed)	N
604	chr6_qbl_hap6	2563411	2563412	rs12211087	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Depression	at least 5,919 European ancestry cases, at least 130,691 European ancestry controls	634,037 European ancestry cases, 1,308,690 European ancestry controls	6p21.33	XXbac, BPG248L24.13	rs12211087-T	0.09841	2E-6		0.018283794	[0.0097-0.0269] unit decrease	NR [9417325] (imputed)	N
604	chr6_qbl_hap6	2564326	2564327	rs142628781	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.33		rs142628781-T	0.070905	3E-14		1.080437	[1.06-1.1]	Affymetrix, Illumina [9851866] (imputed)	N
604	chr6_qbl_hap6	2564603	2564604	rs9264845	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs9264845-C	0.258	3E-16	(MHC class I polypeptide-related sequence B, MICB.5102.55.3)	0.26	[0.2-0.32] unit decrease	Affymetrix [10572788] (imputed)	N
604	chr6_qbl_hap6	2565094	2565095	rs7750963	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large VLDL	115,082 European ancestry individuals	NA	6p21.33		rs7750963-A	0.298149	7E-13		0.0308157	[0.022-0.039] unit decrease	NR [11722792] (imputed)	N
604	chr6_qbl_hap6	2565094	2565095	rs7750963	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large VLDL	115,082 European ancestry individuals	NA	6p21.33		rs7750963-A	0.298149	3E-12		0.0302555	[0.022-0.039] unit decrease	NR [11722792] (imputed)	N
604	chr6_qbl_hap6	2565094	2565095	rs7750963	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6p21.33		rs7750963-A	0.298149	7E-9		0.0250346	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
604	chr6_qbl_hap6	2565094	2565095	rs7750963	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs7750963-G	0.882	8E-43	(Killer cell immunoglobulin-like receptor 2DS2, KIR2DS2.10428.1.3)	0.59	[0.51-0.67] unit decrease	Affymetrix [10572788] (imputed)	N
604	chr6_qbl_hap6	2565244	2565245	rs9461688	18464913	Melzer D	2008-05-09	PLoS Genet	A genome-wide association study identifies protein quantitative trait loci (pQTLs).	Protein quantitative trait loci	1,200 European ancestry individuals	up to 4,590 European ancestry individuals	6p21.33	HLA-C	rs9461688-?	0.31	4E-6	(IL18)			Illumina [496032]	N
604	chr6_qbl_hap6	2565263	2565264	rs9264875	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Lectin-like oxidized LDL receptor 1 levels	21,758 European ancestry individuals	9,173 individuals	6p21.33		rs9264875-C	0.12	2E-9		0.092	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
604	chr6_qbl_hap6	2565728	2565729	rs556990455	32534018	Liu X	2020-06-10	Brain Behav Immun	Genetic factors underlying the bidirectional relationship between autoimmune and mental disorders - findings from a Danish population-based study.	Autoimmune traits	1,383 Danish ancestry cases, 62,656 Danish ancestry controls	NA	6p21.33	NR	rs556990455-T	0.016	7E-11		2.23	[1.79-2.77]	NR [7721839] (imputed)	N
604	chr6_qbl_hap6	2565791	2565792	rs6457374	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs6457374-T	0.753	2E-34	(MHC class I polypeptide-related sequence B, MICB.5102.55.3)	0.39	[0.33-0.45] unit increase	Affymetrix [10572788] (imputed)	N
604	chr6_qbl_hap6	2565791	2565792	rs6457374	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	6p21.33	HLA-C	rs6457374-T	0.73	8E-35		0.041	[0.035-0.047] unit decrease	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
604	chr6_qbl_hap6	2565851	2565852	rs9368677	23042114	Hirota T	2012-10-07	Nat Genet	Genome-wide association study identifies eight new susceptibility loci for atopic dermatitis in the Japanese population.	Atopic dermatitis	1,472 Japanese ancestry cases, 7,971 Japanese ancestry controls	1,856 Japanese ancestry cases, 7,021 Japanese ancestry controls	6p21.33	HLA-C	rs9368677-G	0.798	1E-17		1.36	[1.27-1.46]	Illumina [606164]	N
604	chr6_qbl_hap6	2566083	2566084	rs9264904	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.33		rs9264904-G	0.739	4E-158				Affymetrix [10369434] (imputed)	N
604	chr6_qbl_hap6	2566083	2566084	rs9264904	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.10	rs9264904-A	NR	3E-11		0.0214122	[0.015-0.028] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_qbl_hap6	2566083	2566084	rs9264904	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.10	rs9264904-A	NR	8E-11		0.0209999	[0.015-0.027] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_qbl_hap6	2566083	2566084	rs9264904	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.10	rs9264904-A	NR	8E-9		0.0188102	[0.012-0.025] unit increase	Affymetrix [321169] (imputed)	N
604	chr6_qbl_hap6	2566083	2566084	rs9264904	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	6p21.33	XXbac-BPG248L24.13	rs9264904-A	0.260825	6E-13		0.019344117	[0.014-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
604	chr6_qbl_hap6	2566083	2566084	rs9264904	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	6p21.33	NR	rs9264904-A	0.262119	3E-387		0.091059	[0.087-0.095] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
604	chr6_qbl_hap6	2567023	2567024	rs2508008	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p21.33	NR	rs2508008-G	0.119	3E-6	(IFNAR2_of_CD8p_T)			Illumina [5084123] (imputed)	N
604	chr6_qbl_hap6	2567268	2567269	rs3873386	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.10	rs3873386-C	NR	9E-11		0.0189406	[0.013-0.025] unit decrease	Affymetrix [321016] (imputed)	N
604	chr6_qbl_hap6	2567550	2567551	rs1634761	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.10	rs1634761-T	NR	6E-12		0.0193034	[0.014-0.025] unit decrease	Affymetrix [321016] (imputed)	N
604	chr6_qbl_hap6	2567550	2567551	rs1634761	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.10	rs1634761-T	NR	1E-13		0.0211552	[0.016-0.027] unit increase	Affymetrix [321169] (imputed)	N
604	chr6_qbl_hap6	2567903	2567904	rs9264942	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	6p21.33	NR	rs9264942-?	NR	5E-25	(EA)			Affymetrix, Illumina [~ 9000000] (imputed)	N
604	chr6_qbl_hap6	2567903	2567904	rs9264942	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Crohn's disease	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls	6p21.33	PSORS1C1, NFKBIL1, HLA-C, MICB	rs9264942-C	0.378	5E-28		1.145	[1.107-1.184]	Affymetrix, Illumina [1230000] (imputed)	N
604	chr6_qbl_hap6	2567903	2567904	rs9264942	21051598	Pereyra F	2010-11-04	Science	The major genetic determinants of HIV-1 control affect HLA class I peptide presentation.	HIV-1 control	516 European cases, 1,196 European controls, 341 African American cases, 892 African American controls, 117 Hispanic cases, 560 Hispanic controls	NA	6p21.33	HLA-C	rs9264942-C	0.34	3E-35	(EA)	2.9	[NR]	Illumina [1384048] (imputed)	N
604	chr6_qbl_hap6	2567903	2567904	rs9264942	20041166	Fellay J	2009-12-24	PLoS Genet	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	6p21.33	HLA-C	rs9264942-C	0.412	6E-32	(setpoint)	5.3	[NR] % increase	Illumina [NR]	N
604	chr6_qbl_hap6	2567903	2567904	rs9264942	20041166	Fellay J	2009-12-24	PLoS Genet	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	6p21.33	HLA-C	rs9264942-?	NR	6E-12	(progression)			Illumina [NR]	N
604	chr6_qbl_hap6	2568078	2568079	rs10484554	33385400	Patrick MT	2020-12-29	J Invest Dermatol	Causal relationship and shared genetic loci between psoriasis and type 2 diabetes through trans-disease meta-analysis.	Psoriasis or type 2 diabetes (trans-disease meta-analysis)(opposite effect)	11,024 European ancestry psoriasis cases, 74,124 European ancestry diabetes cases, 840,342 European ancestry controls	NA	6p21.33	NR	rs10484554-T		2E-302		1.67		NR [8016731] (imputed)	N
604	chr6_qbl_hap6	2568078	2568079	rs10484554	26626624	Stuart PE	2015-11-28	Am J Hum Genet	Genome-wide Association Analysis of Psoriatic Arthritis and Cutaneous Psoriasis Reveals Differences in Their Genetic Architecture.	Cutaneous psoriasis	1,363 European ancestry cases, 4,934 European ancestry controls	up to 2,969 European ancestry cases, up to European ancestry 14,384 controls	6p21.33	HLA, HLA-C	rs10484554-T	NR	4E-207		3.304	NR	Illumina [11532644] (imputed)	N
604	chr6_qbl_hap6	2568078	2568079	rs10484554	20953190	Strange A	2010-10-17	Nat Genet	A genome-wide association study identifies new psoriasis susceptibility loci and an interaction between HLA-C and ERAP1.	Psoriasis	2,178 European ancestry cases, 5,175 European ancestry controls	3,174 European ancestry cases, 5,464 European ancestry controls	6p21.33	HLA-C	rs10484554-?	NR	4E-214		4.66	[4.23-5.13]	Illumina [535475]	N
604	chr6_qbl_hap6	2568078	2568079	rs10484554	19115949	Limou S	2009-01-01	J Infect Dis	Genomewide association study of an AIDS-nonprogression cohort emphasizes the role played by HLA genes (ANRS Genomewide Association Study 02).	AIDS progression	275 European ancestry seropositive non-progressors, 86 European ancestry seropositive rapid progressors, 1,352 European ancestry seronegative controls	(see Fellay 2007)	6p21.33	HLA-C	rs10484554-T	0.13	6E-8				Illumina [291119]	N
604	chr6_qbl_hap6	2568078	2568079	rs10484554	18369459	Liu Y	2008-04-04	PLoS Genet	A genome-wide association study of psoriasis and psoriatic arthritis identifies new disease loci.	Psoriasis	218 European ancestry cases, 519 European ancestry controls	1,153 European ancestry cases, 1,217 European ancestry controls	6p21.33	HLA-C	rs10484554-T	0.15	2E-39		2.8	[2.40-3.30]	Illumina [305983]	N
604	chr6_qbl_hap6	2568109	2568110	rs9348865	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.10	rs9348865-G	NR	4E-10		0.0204625	[0.014-0.027] unit increase	Affymetrix [323858] (imputed)	N
604	chr6_qbl_hap6	2568109	2568110	rs9348865	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.10	rs9348865-G	NR	3E-9		0.0194694	[0.013-0.026] unit increase	Affymetrix [127266] (imputed)	N
604	chr6_qbl_hap6	2568109	2568110	rs9348865	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6p21.33	XXbac-BPG248L24.10	rs9348865-G	0.351828	2E-14		0.024740536	[0.018-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
604	chr6_qbl_hap6	2568150	2568151	rs9264945	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	6p21.33	XXbac-BPG248L24.10	rs9264945-A	0.133478	2E-29		0.0345332	[0.028-0.041] unit increase	Affymetrix [93095623] (imputed)	N
604	chr6_qbl_hap6	2568216	2568217	rs3094691	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.10	rs3094691-A	NR	1E-9		0.0192715	[0.013-0.025] unit increase	Affymetrix [323858] (imputed)	N
604	chr6_qbl_hap6	2568216	2568217	rs3094691	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.10	rs3094691-A	NR	2E-8		0.0178577	[0.012-0.024] unit increase	Affymetrix [127266] (imputed)	N
604	chr6_qbl_hap6	2568216	2568217	rs3094691	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.10	rs3094691-A	NR	4E-15		0.0225202	[0.017-0.028] unit increase	Affymetrix [321169] (imputed)	N
604	chr6_qbl_hap6	2568275	2568276	rs3132479	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.10	rs3132479-G	NR	2E-12		0.019918	[0.014-0.025] unit decrease	Affymetrix [321016] (imputed)	N
604	chr6_qbl_hap6	2568275	2568276	rs3132479	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.10	rs3132479-G	NR	3E-14		0.0234978	[0.017-0.03] unit decrease	Affymetrix [323123] (imputed)	N
604	chr6_qbl_hap6	2568275	2568276	rs3132479	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	6p21.33	XXbac-BPG248L24.10	rs3132479-A	0.5388	2E-7		0.0369	[0.023-0.051] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
604	chr6_qbl_hap6	2568275	2568276	rs3132479	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Perceived unattractiveness to mosquitoes	16,576 European ancestry individuals	NA	6p21.33	HLA-C, MICA	rs3132479-G	0.466	6E-7		0.11555	[0.07-0.161] unit decrease	Illumina [7433384] (imputed)	N
604	chr6_qbl_hap6	2568317	2568317	rs540653847	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6p21.33	XXbac-BPG248L24.10	rs540653847-GC	0.00672899999999999	3E-18		0.12216329	[0.095-0.15] unit increase	Affymetrix [93095623] (imputed)	N
604	chr6_qbl_hap6	2568317	2568317	rs540653847	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	6p21.33	XXbac-BPG248L24.10	rs540653847-GC	0.0064	8E-9		0.1328338	[0.088-0.178] unit increase	Affymetrix [~ 2500000] (imputed)	N
604	chr6_qbl_hap6	2568317	2568317	rs540653847	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	6p21.33	XXbac-BPG248L24.10	rs540653847-GC	0.0064	6E-10		0.1418412	[0.097-0.187] unit increase	Affymetrix [~ 2500000] (imputed)	N
604	chr6_qbl_hap6	2568342	2568342	rs5875308	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.33	XXbac-BPG248L24.10	rs5875308-CA	0.2653	7E-6		0.0365	[0.021-0.052] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
604	chr6_qbl_hap6	2569179	2569180	rs3873387	29532581	Hallfors J	2018-03-13	Addict Biol	Genome-wide association study in Finnish twins highlights the connection between nicotine addiction and neurotrophin signaling pathway.	Smoking behaviour (maximum cigarettes in a 24 hour period)	1,711 Finnish ancestry ever smoker individuals from up to 739 families	NA	6p21.33	NR	rs3873387-A	0.24743	1E-6		2.706126	[1.61-3.80] unit decrease	Illumina [9469131] (imputed)	N
604	chr6_qbl_hap6	2569343	2569344	rs3873388	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.10	rs3873388-G	NR	8E-10		0.0213529	[0.015-0.028] unit decrease	Affymetrix [323123] (imputed)	N
604	chr6_qbl_hap6	2569830	2569831	rs1634794	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.33	Intergenic	rs1634794-T	NR	7E-10	(women)	0.0287016	[0.02-0.038] unit decrease	Illumina [13520550] (imputed)	N
604	chr6_qbl_hap6	2569951	2569952	rs9264962	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.33	Intergenic	rs9264962-G	NR	8E-13		0.0264842	[0.019-0.034] unit increase	Illumina [13520550] (imputed)	N
604	chr6_qbl_hap6	2569963	2569964	rs1005599	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small HDL	115,082 European ancestry individuals	NA	6p21.33		rs1005599-G	0.289198	3E-16		0.0361878	[0.028-0.045] unit decrease	NR [11722792] (imputed)	N
604	chr6_qbl_hap6	2569963	2569964	rs1005599	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium HDL	115,082 European ancestry individuals	NA	6p21.33		rs1005599-G	0.289198	5E-16		0.0364668	[0.028-0.045] unit decrease	NR [11722792] (imputed)	N
604	chr6_qbl_hap6	2569963	2569964	rs1005599	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in HDL	115,082 European ancestry individuals	NA	6p21.33		rs1005599-G	0.289198	2E-15		0.0354759	[0.027-0.044] unit decrease	NR [11722792] (imputed)	N
604	chr6_qbl_hap6	2569963	2569964	rs1005599	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small HDL	115,082 European ancestry individuals	NA	6p21.33		rs1005599-G	0.289198	1E-19		0.0413294	[0.032-0.05] unit decrease	NR [11722792] (imputed)	N
604	chr6_qbl_hap6	2569963	2569964	rs1005599	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total fatty acid levels	115,006 European ancestry individuals	NA	6p21.33		rs1005599-G	0.289208	7E-21		0.0423272	[0.033-0.051] unit decrease	NR [11722792] (imputed)	N
604	chr6_qbl_hap6	2569963	2569964	rs1005599	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Saturated fatty acid levels	115,006 European ancestry individuals	NA	6p21.33		rs1005599-G	0.289208	7E-16		0.0364401	[0.028-0.045] unit decrease	NR [11722792] (imputed)	N
604	chr6_qbl_hap6	2569963	2569964	rs1005599	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small HDL	115,082 European ancestry individuals	NA	6p21.33		rs1005599-G	0.289198	8E-20		0.0413457	[0.032-0.05] unit decrease	NR [11722792] (imputed)	N
604	chr6_qbl_hap6	2569963	2569964	rs1005599	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Monounsaturated fatty acid levels	115,006 European ancestry individuals	NA	6p21.33		rs1005599-G	0.289208	4E-19		0.040361	[0.032-0.049] unit decrease	NR [11722792] (imputed)	N
604	chr6_qbl_hap6	2569963	2569964	rs1005599	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycoprotein acetyls levels	115,082 European ancestry individuals	NA	6p21.33		rs1005599-G	0.289198	4E-32		0.0533982	[0.045-0.062] unit decrease	NR [11722792] (imputed)	N
604	chr6_qbl_hap6	2570293	2570294	rs1634791	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total free cholesterol levels	115,082 European ancestry individuals	NA	6p21.33		rs1634791-A	0.450407	2E-10		0.0263105	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
604	chr6_qbl_hap6	2570293	2570294	rs1634791	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total esterified cholesterol levels	115,082 European ancestry individuals	NA	6p21.33		rs1634791-A	0.450407	6E-11		0.0267294	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
604	chr6_qbl_hap6	2570293	2570294	rs1634791	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol levels	115,082 European ancestry individuals	NA	6p21.33		rs1634791-A	0.450407	7E-11		0.0267605	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
604	chr6_qbl_hap6	2570293	2570294	rs1634791	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Sphingomyelin levels	115,006 European ancestry individuals	NA	6p21.33		rs1634791-A	0.450416	2E-11		0.0265776	[0.019-0.034] unit decrease	NR [11722792] (imputed)	N
604	chr6_qbl_hap6	2570293	2570294	rs1634791	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in LDL	115,082 European ancestry individuals	NA	6p21.33		rs1634791-A	0.450407	7E-10		0.0260256	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
604	chr6_qbl_hap6	2570293	2570294	rs1634791	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	6p21.33	NR	rs1634791-A	0.455909	8E-23		0.011832	[0.0093-0.0143] unit increase	Affymetrix [16585854] (imputed)	N
604	chr6_qbl_hap6	2570293	2570294	rs1634791	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	6p21.33	NR	rs1634791-A	0.455909	1E-12		0.0102161	[0.0074-0.0131] unit increase	Affymetrix [16585866] (imputed)	N
604	chr6_qbl_hap6	2573700	2573701	rs117298325	30498034	Terao C	2018-11-29	Proc Natl Acad Sci U S A	Genetic determinants and an epistasis of LILRA3 and HLA-B*52 in Takayasu arteritis.	Takayasu arteritis	411 Japanese ancestry cases, 2,158 Japanese ancestry controls	219 Japanese ancestry cases, 3,770 Japanese ancestry controls	6p21.33	HLA-B	rs117298325-C	NR	4E-34				Illumina [5878075] (imputed)	N
604	chr6_qbl_hap6	2577086	2577087	rs1634783	31738830	McGraw KL	2019-11-01	Blood Adv	Non-del(5q) myelodysplastic syndromes-associated loci detected by SNP-array genome-wide association meta-analysis.	Non-del(5q) myelodysplastic syndromes	907 European ancestry cases, 5,605 European ancestry controls	NA	6p21.33	intergenic	rs1634783-G	0.5	8E-7		1.3157895	[1.19-1.49]	Affymetrix [7515136] (imputed)	N
604	chr6_qbl_hap6	2577549	2577550	rs1634738	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs1634738-A	0.276	1E-14	(alpha-2-macroglobulin receptor-associated protein, LRPAP1.8829.4.3)	0.22	[0.16-0.28] unit increase	Affymetrix [10572788] (imputed)	N
604	chr6_qbl_hap6	2579542	2579543	rs28367727	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	6p21.33	NR	rs28367727-G	0.229348	1E-9		0.0520093	[0.035-0.069] unit decrease	Affymetrix [17914406] (imputed)	N
604	chr6_qbl_hap6	2580938	2580939	rs9265113	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	6p21.33		rs9265113-C	0.592366	4E-13		0.0285779	[0.021-0.036] unit increase	NR [11722792] (imputed)	N
604	chr6_qbl_hap6	2580938	2580939	rs9265113	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large HDL	115,082 European ancestry individuals	NA	6p21.33		rs9265113-C	0.592366	3E-13		0.0287846	[0.021-0.037] unit increase	NR [11722792] (imputed)	N
604	chr6_qbl_hap6	2580938	2580939	rs9265113	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	6p21.33		rs9265113-C	0.592366	2E-12		0.0277589	[0.02-0.035] unit increase	NR [11722792] (imputed)	N
604	chr6_qbl_hap6	2580938	2580939	rs9265113	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	6p21.33		rs9265113-C	0.592366	8E-13		0.0281895	[0.02-0.036] unit increase	NR [11722792] (imputed)	N
604	chr6_qbl_hap6	2580938	2580939	rs9265113	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	6p21.33		rs9265113-C	0.592366	2E-12		0.0281201	[0.02-0.036] unit increase	NR [11722792] (imputed)	N
604	chr6_qbl_hap6	2580938	2580939	rs9265113	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	6p21.33		rs9265113-C	0.592366	3E-13		0.0295629	[0.022-0.037] unit increase	NR [11722792] (imputed)	N
604	chr6_qbl_hap6	2580938	2580939	rs9265113	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	6p21.33		rs9265113-C	0.592366	1E-12		0.0281506	[0.02-0.036] unit increase	NR [11722792] (imputed)	N
604	chr6_qbl_hap6	2580938	2580939	rs9265113	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	6p21.33		rs9265113-C	0.592366	1E-11		0.0270795	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
604	chr6_qbl_hap6	2581468	2581469	rs9265143	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p21.33	NR	rs9265143-A	0.408	6E-6	(IFNalpha_STAT1_of_CD4p_T)			Illumina [5084123] (imputed)	N
604	chr6_qbl_hap6	2581679	2581680	rs4445093	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (vasodilators used in cardiac diseases)	5,546 European ancestry cases, 237,113 European ancestry controls, 17,050 East Asian ancestry cases, 161,676 East Asian ancestry controls	NA	6p21.33		rs4445093-T	NR	3E-8		0.0768	[0.05-0.104] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
604	chr6_qbl_hap6	2582300	2582301	rs9265153	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Angiopoietin-1 receptor levels	21,758 European ancestry individuals	9,173 individuals	6p21.33		rs9265153-C	0.37	1E-10		0.0638	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
604	chr6_qbl_hap6	2582363	2582364	rs7748141	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PDIA5	5,366 Icelandic ancestry individuals	NA	6p21.33		rs7748141-C	0.07983	2E-47		0.504487	[0.44-0.57] unit increase	Illumina [7506463] (imputed)	N
604	chr6_qbl_hap6	2587763	2587764	rs142174523	31594949	Nievergelt CM	2019-10-08	Nat Commun	International meta-analysis of PTSD genome-wide association studies identifies sex- and ancestry-specific genetic risk loci.	Post-traumatic stress disorder	23,212 European ancestry cases, 4,363 African ancestry cases, 1,981 Latino and Native American ancestry cases, 151,447 European ancestry controls, 10,976 African ancestry controls, 3,722 Latino and Native American ancestry controls	NA	6p21.33	NR	rs142174523-G	NR	4E-8	(African, male)	1.3157895	[1.19-1.45]	Affymetrix, Illumina [~ 1175791] (imputed)	N
604	chr6_qbl_hap6	2588385	2588386	rs117309887	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PCSK7	5,355 Icelandic ancestry individuals	NA	6p21.33		rs117309887-T	0.09768	2E-14		0.238034	[0.18-0.3] unit increase	Illumina [7506463] (imputed)	N
604	chr6_qbl_hap6	2589842	2589843	rs116576188	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs116576188-C	0.116	2E-22	(Ubiquitin carboxyl-terminal hydrolase 25, USP25.9215.117.3)	0.38	[0.3-0.46] unit increase	Affymetrix [10572788] (imputed)	N
604	chr6_qbl_hap6	2589861	2589862	rs114046333	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p21.33	NR	rs114046333-?	NR	1E-14		0.2802	[0.21-0.35] unit decrease	Illumina [at least 560000] (imputed)	N
604	chr6_qbl_hap6	2589882	2589883	rs3094685	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DNAJC10	5,351 Icelandic ancestry individuals	NA	6p21.33		rs3094685-T	0.2128	3E-35		0.266011	[0.22-0.31] unit increase	Illumina [7506463] (imputed)	N
604	chr6_qbl_hap6	2590007	2590008	rs3130703	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 23)	2,187 European ancestry individuals	NA	6p21.33	NR	rs3130703-C	0.2795	4E-7		0.1707	[0.1-0.24] unit increase	Illumina [10677593] (imputed)	N
604	chr6_qbl_hap6	2591052	2591053	rs9265503	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs9265503-T	0.342	4E-28	(MHC class I polypeptide-related sequence B, MICB.5102.55.3)	0.31	[0.25-0.37] unit decrease	Affymetrix [10572788] (imputed)	N
604	chr6_qbl_hap6	2591091	2591092	rs9405068	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atopic dermatitis	6,224 European ancestry cases, 475,075 European ancestry controls, 4,296 East Asian ancestry cases, 163,807 East Asian ancestry controls	NA	6p21.33		rs9405068-T	NR	1E-13		0.2372	[0.17-0.3] unit decrease	Affymetrix, Illumina [25843389] (imputed)	N
604	chr6_qbl_hap6	2591244	2591245	rs9265517	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.10	rs9265517-C	NR	8E-10		0.0206019	[0.014-0.027] unit decrease	Affymetrix [319769] (imputed)	N
604	chr6_qbl_hap6	2591244	2591245	rs9265517	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.10	rs9265517-C	NR	2E-9		0.0202233	[0.014-0.027] unit decrease	Affymetrix [319769] (imputed)	N
604	chr6_qbl_hap6	2591614	2591615	rs111797167	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on unswitched memory B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs111797167-G	0.07168	7E-9		0.4094	[0.27-0.55] unit increase	Illumina [18238311] (imputed)	N
604	chr6_qbl_hap6	2591614	2591615	rs111797167	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on IgD+ CD24+ B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs111797167-G	0.07168	1E-8		0.4014	[0.26-0.54] unit increase	Illumina [18238311] (imputed)	N
604	chr6_qbl_hap6	2591841	2591842	rs9265559	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	HDL cholesterol levels	115,082 European ancestry individuals	NA	6p21.33		rs9265559-C	0.649153	2E-13		0.0287989	[0.021-0.036] unit increase	NR [11722792] (imputed)	N
604	chr6_qbl_hap6	2591841	2591842	rs9265559	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in HDL	115,082 European ancestry individuals	NA	6p21.33		rs9265559-C	0.649153	2E-13		0.0284805	[0.021-0.036] unit increase	NR [11722792] (imputed)	N
604	chr6_qbl_hap6	2591896	2591897	rs28752857	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs28752857-?		5E-8		1.06	[1.04-1.08]	Illumina [7645193] (imputed)	N
604	chr6_qbl_hap6	2592013	2592013	rs530257728	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	6p21.33	intergenic	rs530257728-GAAATAAAGCAGATTT	0.0801	5E-21		0.06499605	[0.051-0.079] unit increase	Affymetrix [~ 2500000] (imputed)	N
604	chr6_qbl_hap6	2592022	2592023	rs28895001	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.33		rs28895001-T	0.163489	8E-27		0.045384236	[0.037-0.054] unit decrease	Affymetrix [93095623] (imputed)	N
604	chr6_qbl_hap6	2592579	2592580	rs7772894	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on memory B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs7772894-T	0.10721	3E-9		0.2956	[0.2-0.39] unit increase	Illumina [18238311] (imputed)	N
604	chr6_qbl_hap6	2592579	2592580	rs7772894	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on CD24+ CD27+ B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs7772894-T	0.10721	3E-9		0.2945	[0.2-0.39] unit increase	Illumina [18238311] (imputed)	N
604	chr6_qbl_hap6	2592941	2592942	rs17192757	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling miserable	376,097 European ancestry individuals	NA	6p21.33	PSORS1C1	rs17192757-A	0.132647	5E-8		5.46	z score increase	NR [10847151] (imputed)	N
604	chr6_qbl_hap6	2592973	2592973	rs111743557	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-B	rs111743557-TTG	NR	5E-9		0.0221507	[0.015-0.03] unit decrease	Affymetrix [323858] (imputed)	N
604	chr6_qbl_hap6	2592973	2592973	rs111743557	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HLA-B	rs111743557-TTG	NR	2E-8		0.0212612	[0.014-0.029] unit decrease	Affymetrix [127266] (imputed)	N
604	chr6_qbl_hap6	2592973	2592973	rs111743557	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.33	NR	rs111743557-T	0.888	2E-18	(conditional)	0.729	[0.66-0.8]	Illumina [11270530] (imputed)	N
604	chr6_qbl_hap6	2593160	2593161	rs9265620	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	6p21.33		rs9265620-T	0.629786	1E-11		0.0263927	[0.019-0.034] unit decrease	NR [11722792] (imputed)	N
604	chr6_qbl_hap6	2593160	2593161	rs9265620	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	6p21.33		rs9265620-T	0.629787	7E-13		0.0279211	[0.02-0.036] unit increase	NR [11722792] (imputed)	N
604	chr6_qbl_hap6	2593761	2593762	rs6902116	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	6p21.33	HLA-B	rs6902116-A	0.677972	2E-40		0.0274179	[0.023-0.031] unit increase	Affymetrix [NR] (imputed)	N
604	chr6_qbl_hap6	2594294	2594295	rs12212594	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Psoriasis vulgaris	5,072 European ancestry cases, 478,102 European ancestry controls, 206 East Asian ancestry cases, 172,289 East Asian ancestry controls	NA	6p21.33		rs12212594-C	NR	5E-209		1.4454	[1.35-1.54] unit increase	Affymetrix, Illumina [25844455] (imputed)	N
604	chr6_qbl_hap6	2594811	2594812	rs6908001	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	6p21.33		rs6908001-C	NR	4E-36		0.0278	[0.023-0.032] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
604	chr6_qbl_hap6	2595111	2595112	rs28752871	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	76 Han Chinese ancestry cases, 889 Han Chinese ancestry controls	NA	6p21.33	HLA-B	rs28752871-?	NR	5E-8	(conditional on rs12110437 and rs1264697)			Illumina [3403929] (imputed)	N
604	chr6_qbl_hap6	2595999	2596000	rs9265742	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CPXM1	5,363 Icelandic ancestry individuals	NA	6p21.33		rs9265742-A	0.2045	4E-12		0.162501	[0.12-0.21] unit decrease	Illumina [7506463] (imputed)	N
604	chr6_qbl_hap6	2596116	2596117	rs11968046	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	6p21.33		rs11968046-C	0.772833	5E-11		0.0309702	[0.022-0.04] unit decrease	NR [11722792] (imputed)	N
604	chr6_qbl_hap6	2596116	2596117	rs11968046	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	6p21.33		rs11968046-C	0.772833	2E-10		0.0301683	[0.021-0.04] unit decrease	NR [11722792] (imputed)	N
604	chr6_qbl_hap6	2596116	2596117	rs11968046	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	6p21.33		rs11968046-C	0.772833	2E-10		0.030047	[0.021-0.039] unit decrease	NR [11722792] (imputed)	N
604	chr6_qbl_hap6	2596116	2596117	rs11968046	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Triglyceride levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	6p21.33	HLA-C, HLA-B	rs11968046-?		2E-11		0.0605	[0.043-0.078] unit decrease	Illumina [31500000] (imputed)	N
604	chr6_qbl_hap6	2596192	2596193	rs9265745	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.33		rs9265745-A	0.591	7E-36				Affymetrix [10369434] (imputed)	N
604	chr6_qbl_hap6	2596749	2596750	rs1634774	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.33		rs1634774-A	0.68	1E-34				Affymetrix [10369434] (imputed)	N
604	chr6_qbl_hap6	2596753	2596754	rs28752890	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs28752890-A	NR	2E-12		0.0210684	[0.015-0.027] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_qbl_hap6	2596753	2596754	rs28752890	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs28752890-A	NR	1E-11		0.0202141	[0.014-0.026] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_qbl_hap6	2596753	2596754	rs28752890	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs28752890-A	NR	4E-11		0.0198841	[0.014-0.026] unit increase	Affymetrix [321169] (imputed)	N
604	chr6_qbl_hap6	2596798	2596799	rs114444221	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	6p21.33	HLA-B	rs114444221-?	NR	9E-18		1.133	[1.1-1.16]	Affymetrix [9000000] (imputed)	N
604	chr6_qbl_hap6	2596798	2596799	rs114444221	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	6p21.33	HLA-B	rs114444221-A	NR	9E-16		1.134	[1.1-1.17]	Affymetrix [9000000] (imputed)	N
604	chr6_qbl_hap6	2597353	2597354	rs28752923	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6p21.33		rs28752923-?	NR	4E-10		0.9344	[0.91-0.96]	NR [685523]	N
604	chr6_qbl_hap6	2597396	2597397	rs28752924	34454985	Sliz E	2021-08-26	J Allergy Clin Immunol	Uniting biobank resources reveals novel genetic pathways modulating susceptibility for atopic dermatitis.	Atopic dermatitis	22,474 European ancestry cases, 774,187 European ancestry controls	NA	6p21.33	NR	rs28752924-t	0.6336	5E-11		1.1	[1.07-1.14]	Affymetrix, Illumina [16201029] (imputed)	N
604	chr6_qbl_hap6	2597765	2597766	rs28752936	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs28752936-A	NR	5E-11		0.0187215	[0.013-0.024] unit increase	Affymetrix [321169] (imputed)	N
604	chr6_qbl_hap6	2597869	2597870	rs1634769	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p21.33	NR	rs1634769-A	0.649245	2E-13		0.026251458	[0.019-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
604	chr6_qbl_hap6	2597962	2597963	rs380852	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6p21.33	NR	rs380852-T	0.05472	7E-15		1.107	[1.08-1.135]	Affymetrix [15688218] (imputed)	N
604	chr6_qbl_hap6	2598107	2598108	rs28752949	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs28752949-A	NR	3E-9		0.0170482	[0.011-0.023] unit decrease	Affymetrix [321016] (imputed)	N
604	chr6_qbl_hap6	2599116	2599117	rs1631951	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p21.33	NR	rs1631951-T	0.18	4E-12		1.15	[1.11-1.2]	Affymetrix [9886854] (imputed)	N
604	chr6_qbl_hap6	2599116	2599117	rs1631951	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p21.33	NR	rs1631951-T	0.18	6E-17			[NR]	Affymetrix [9886854] (imputed)	N
604	chr6_qbl_hap6	2599116	2599117	rs1631951	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p21.33	NR	rs1631951-T	0.18	2E-15		1.13	[1.1-1.16]	Affymetrix [9886854] (imputed)	N
604	chr6_qbl_hap6	2599116	2599117	rs1631951	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p21.33	NR	rs1631951-T	0.18	3E-16			[NR]	Affymetrix [9886854] (imputed)	N
604	chr6_qbl_hap6	2599116	2599117	rs1631951	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in non-current smokers	16,488 European ancestry cases, 169,688 European ancestry controls	NA	6p21.33	NR	rs1631951-T	0.18	2E-15		1.13	[1.1-1.16]	Affymetrix [9886854] (imputed)	N
604	chr6_qbl_hap6	2599116	2599117	rs1631951	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in never smokers	8,631 European ancestry cases, 120,544 European ancestry controls	NA	6p21.33	NR	rs1631951-T	0.18	3E-12		1.15	[1.11-1.2]	Affymetrix [9886854] (imputed)	N
604	chr6_qbl_hap6	2599116	2599117	rs1631951	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in ever smokers	12,446 European ancestry cases, 59,145 European ancestry controls	NA	6p21.33	NR	rs1631951-T	0.18	4E-7		1.1	[1.06-1.14]	Affymetrix [9886854] (imputed)	N
604	chr6_qbl_hap6	2599206	2599207	rs28367832	32004448	Savage SA	2020-01-30	Am J Hum Genet	Genome-wide Association Study Identifies HLA-DPB1 as a Significant Risk Factor for Severe Aplastic Anemia.	Severe aplastic anemia	359 European ancestry cases, 1,396 European ancestry controls	175 European ancestry cases, 1,059 European ancestry controls	6p21.33	HLA-B	rs28367832-?	NR	7E-9		1.49	[1.22-1.78]	Illumina [688067]	N
604	chr6_qbl_hap6	2599895	2599896	rs1625792	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Help-seeking from a GP	113,262 British ancestry cases, 219,360 British ancestry controls	NA	6p21.33	NR	rs1625792-G	0.853	5E-8		1.0405828	[1.03-1.05]	NR [5276842] (imputed)	N
604	chr6_qbl_hap6	2599895	2599896	rs1625792	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p21.33	NR	rs1625792-?	NR	1E-7		5.298	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
604	chr6_qbl_hap6	2602332	2602333	rs1622406	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	HLA-B, HLA-C, XXbac-BPG248L24.12, MICB, USP8P1, RPL3P2, MIR6891, PPIAP9, XXbac-BPG16N22.5	rs1622406-T	0.03009027	7E-63	(EA, Alpha-2-macroglobulin receptor-associated protein)	2.011	[1.79-2.23] unit increase	Affymetrix [509946]	N
604	chr6_qbl_hap6	2602727	2602728	rs34872474	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.33		rs34872474-G	0.0764200000000001	2E-15		0.042707935	[0.032-0.053] unit decrease	Affymetrix [93095623] (imputed)	N
604	chr6_qbl_hap6	2602917	2602918	rs113021938	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	6p21.33		rs113021938-G	0.027345	2E-14		0.052308656	[0.039-0.066] unit decrease	Affymetrix [93095623] (imputed)	N
604	chr6_qbl_hap6	2604684	2604685	rs2854011	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.33		rs2854011-G	0.848	4E-80				Affymetrix [10369434] (imputed)	N
604	chr6_qbl_hap6	2604684	2604685	rs2854011	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p21.33		rs2854011-G	0.848	4E-55				Affymetrix [10369434] (imputed)	N
604	chr6_qbl_hap6	2604768	2604769	rs28380833	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs28380833-?		8E-9		1.8	[1.47-2.20]	Illumina [7645193] (imputed)	N
604	chr6_qbl_hap6	2604828	2604829	rs9265828	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6p21.33		rs9265828-G	0.569472	1E-13		0.026239738	[0.019-0.033] unit increase	Affymetrix [93095623] (imputed)	N
604	chr6_qbl_hap6	2604849	2604850	rs9265830	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs9265830-A	NR	5E-28		0.0333407	[0.027-0.039] unit decrease	Affymetrix [319769] (imputed)	N
604	chr6_qbl_hap6	2604849	2604850	rs9265830	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs9265830-A	NR	3E-26		0.0322127	[0.026-0.038] unit decrease	Affymetrix [319769] (imputed)	N
604	chr6_qbl_hap6	2604849	2604850	rs9265830	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs9265830-A	NR	1E-8		0.0174211	[0.011-0.023] unit decrease	Affymetrix [321114] (imputed)	N
604	chr6_qbl_hap6	2604849	2604850	rs9265830	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs9265830-A	NR	4E-25		0.0318177	[0.026-0.038] unit decrease	Affymetrix [321169] (imputed)	N
604	chr6_qbl_hap6	2605385	2605386	rs2394976	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to omega-3 fatty acids	115,006 European ancestry individuals	NA	6p21.33		rs2394976-G	0.838358	5E-9		0.0315075	[0.021-0.042] unit decrease	NR [11722792] (imputed)	N
604	chr6_qbl_hap6	2605532	2605533	rs2394977	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-B	rs2394977-G	NR	2E-12		0.0222252	[0.016-0.028] unit increase	Affymetrix [323858] (imputed)	N
604	chr6_qbl_hap6	2605532	2605533	rs2394977	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HLA-B	rs2394977-G	NR	4E-11		0.0207721	[0.015-0.027] unit increase	Affymetrix [127266] (imputed)	N
604	chr6_qbl_hap6	2605532	2605533	rs2394977	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-B	rs2394977-G	NR	6E-20		0.028162	[0.022-0.034] unit decrease	Affymetrix [323123] (imputed)	N
604	chr6_qbl_hap6	2605533	2605534	rs2256752	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	6p21.33	intergenic	rs2256752-C	0.3515	2E-13		0.02753249	[0.02-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
604	chr6_qbl_hap6	2605767	2605768	rs4521636	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-B	rs4521636-T	NR	2E-9		0.0186949	[0.013-0.025] unit decrease	Affymetrix [323858] (imputed)	N
604	chr6_qbl_hap6	2605767	2605768	rs4521636	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HLA-B	rs4521636-T	NR	2E-8		0.0174949	[0.011-0.024] unit decrease	Affymetrix [127266] (imputed)	N
604	chr6_qbl_hap6	2605767	2605768	rs4521636	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-B	rs4521636-T	NR	2E-16		0.0251493	[0.019-0.031] unit increase	Affymetrix [323123] (imputed)	N
604	chr6_qbl_hap6	2605801	2605802	rs3134792	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.33	intergenic	rs3134792-C	0.114	6E-72		3.93	[NR]	Illumina [242824]	N
604	chr6_qbl_hap6	2605801	2605802	rs3134792	18364390	Capon F	2008-03-25	Hum Mol Genet	Identification of ZNF313/RNF114 as a novel psoriasis susceptibility gene.	Psoriasis	318 European ancestry cases, 288 European ancestry controls	2,361 European ancestry cases, 1,927 European ancestry controls	6p21.33	HLA-C	rs3134792-?	NR	1E-9				Illumina [~ 408000]	N
604	chr6_qbl_hap6	2606013	2606014	rs2854008	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p21.33	NR	rs2854008-A	0.274988	5E-92				Affymetrix, Illumina [24332387] (imputed)	N
604	chr6_qbl_hap6	2606013	2606014	rs2854008	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	6p21.33	NR	rs2854008-A	0.293344	2E-97		0.04242	[0.038-0.046] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
604	chr6_qbl_hap6	2606506	2606507	rs2394982	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	6p21.33	intergenic	rs2394982-T	0.3056	8E-9		0.02209588	[0.015-0.03] unit increase	Affymetrix [~ 2500000] (imputed)	N
604	chr6_qbl_hap6	2606509	2606510	rs9265878	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs9265878-G	0.732	2E-102				Affymetrix [10369434] (imputed)	N
604	chr6_qbl_hap6	2606696	2606697	rs9265885	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	120,539 East Asian ancestry individuals	NA	6p21.33		rs9265885-C	0.425161	1E-20		0.0356702	[0.028-0.043] unit decrease	Illumina [13474682] (imputed)	N
604	chr6_qbl_hap6	2606734	2606735	rs9265888	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs9265888-T	NR	2E-8		0.0163341	[0.011-0.022] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_qbl_hap6	2606947	2606948	rs9265902	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.33		rs9265902-G	0.721	5E-33				Affymetrix [10369434] (imputed)	N
604	chr6_qbl_hap6	2606947	2606948	rs9265902	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-B	rs9265902-A	NR	1E-9		0.0207461	[0.014-0.027] unit decrease	Affymetrix [323123] (imputed)	N
604	chr6_qbl_hap6	2606947	2606948	rs9265902	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs9265902-A	NR	1E-8		0.0181136	[0.012-0.024] unit increase	Affymetrix [321169] (imputed)	N
604	chr6_qbl_hap6	2607078	2607079	rs9265906	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-B	rs9265906-C	NR	5E-8		0.0168982	[0.011-0.023] unit decrease	Affymetrix [323123] (imputed)	N
604	chr6_qbl_hap6	2607078	2607079	rs9265906	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs9265906-C	NR	4E-8		0.0157447	[0.01-0.021] unit increase	Affymetrix [321169] (imputed)	N
604	chr6_qbl_hap6	2607543	2607544	rs12175330	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-B	rs12175330-T	NR	1E-13		0.0240282	[0.018-0.03] unit decrease	Affymetrix [323123] (imputed)	N
604	chr6_qbl_hap6	2607543	2607544	rs12175330	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs12175330-T	NR	1E-8		0.0170347	[0.011-0.023] unit increase	Affymetrix [321169] (imputed)	N
604	chr6_qbl_hap6	2607583	2607584	rs3016018	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.33		rs3016018-C	NR	2E-14		1.132	[1.097-1.169]	Affymetrix [7846216] (imputed)	N
604	chr6_qbl_hap6	2608123	2608124	rs2507999	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Keratinocyte cancer (MTAG)	at least 18,538 European ancestry cases, at least 340,302 European ancestry controls	NA	6p21.33	HLA-B	rs2507999-A	0.328281	1E-10		1.0638298	[1.04-1.08]	Affymetrix [7600000] (imputed)	N
604	chr6_qbl_hap6	2608510	2608511	rs9265940	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs9265940-G	NR	3E-19		0.0271089	[0.021-0.033] unit increase	Affymetrix [321016] (imputed)	N
604	chr6_qbl_hap6	2608535	2608536	rs9265942	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	6p21.33		rs9265942-C	0.871684	4E-12		0.0455219	[0.033-0.058] unit decrease	NR [11722792] (imputed)	N
604	chr6_qbl_hap6	2608577	2608577	rs150481781	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	6p21.33		rs150481781-AGAGCTTCCCAATTGCT	NR	1E-30		0.0258	[0.021-0.03] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
604	chr6_qbl_hap6	2608697	2608698	rs28771425	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	CX3CL1 levels	21,758 European ancestry individuals	9,173 individuals	6p21.33		rs28771425-A	0.43	5E-19		0.099	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
604	chr6_qbl_hap6	2608816	2608817	rs9265954	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	6p21.33	HLA-B	rs9265954-T	0.0497	2E-18		0.0604	[0.047-0.074] unit increase	Affymetrix [18391927] (imputed)	N
604	chr6_qbl_hap6	2608840	2608841	rs9265956	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.33		rs9265956-T	0.324	2E-45				Affymetrix [10369434] (imputed)	N
604	chr6_qbl_hap6	2608883	2608883	rs111721712	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6p21.33		rs111721712-C	0.530439	2E-12		0.0293352	[0.021-0.037] unit increase	NR [11722792] (imputed)	N
604	chr6_qbl_hap6	2608883	2608883	rs111721712	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6p21.33		rs111721712-C	0.530439	1E-12		0.0294594	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
604	chr6_qbl_hap6	2608883	2608883	rs111721712	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	6p21.33		rs111721712-C	0.534	9E-42		0.15	[0.13-0.17] % increase	Affymetrix [NR] (imputed)	N
604	chr6_qbl_hap6	2608883	2608883	rs111721712	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs111721712-CT	NR	8E-10		0.0174035	[0.012-0.023] unit decrease	Affymetrix [321016] (imputed)	N
604	chr6_qbl_hap6	2608883	2608883	rs111721712	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	6p21.33	intergenic	rs111721712-CT	0.4708	1E-26		0.03814722	[0.031-0.045] unit increase	Affymetrix [~ 2500000] (imputed)	N
604	chr6_qbl_hap6	2608987	2608988	rs116685461	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	6p21.33	MHC	rs116685461-G	0.8755	3E-6		1.06	[1.04-1.09]	Affymetrix, Illumina [16900397] (imputed)	N
604	chr6_qbl_hap6	2608987	2608988	rs116685461	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	6p21.33	intergenic	rs116685461-A	0.098	5E-11		0.04047215	[0.028-0.053] unit decrease	Affymetrix [~ 2500000] (imputed)	N
604	chr6_qbl_hap6	2609104	2609105	rs9265965	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium HDL	115,082 European ancestry individuals	NA	6p21.33		rs9265965-T	0.867699	1E-14		0.0453236	[0.034-0.057] unit increase	NR [11722792] (imputed)	N
604	chr6_qbl_hap6	2609123	2609124	rs2523625	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Body fat percentage variance	341,632 European ancestry individuals	NA	6p21.33	HLA-B	rs2523625-?	NR	3E-10				NR [5554549] (imputed)	N
604	chr6_qbl_hap6	2609138	2609139	rs9265968	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	6p21.33	HLA-B	rs9265968-A	0.866272	1E-21		0.0201268	[0.016-0.024] unit decrease	Affymetrix [12370749]	N
604	chr6_qbl_hap6	2609935	2609936	rs116438126	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	6p21.33	intergenic	rs116438126-T	0.0084	6E-18		0.1721088	[0.13-0.21] unit increase	Affymetrix [~ 2500000] (imputed)	N
604	chr6_qbl_hap6	2610046	2610047	rs200291258	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atopic dermatitis	4,296 East Asian ancestry cases, 163,807 East Asian ancestry controls	NA	6p21.33		rs200291258-A	0.179174296	6E-15		0.25656497	[0.19-0.32] unit decrease	Illumina [13428180] (imputed)	N
604	chr6_qbl_hap6	2610235	2610236	rs5014819	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs5014819-T	NR	3E-15		0.0226584	[0.017-0.028] unit decrease	Affymetrix [321016] (imputed)	N
604	chr6_qbl_hap6	2610386	2610387	rs2923008	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in diabetes	70,762 European ancestry individuals, 20,967 African American individuals	NA	6p21.33	HLA-B	rs2923008-T	0.106	2E-12		1.017	[0.73-1.3] unit decrease	Affymetrix [NR] (imputed)	N
604	chr6_qbl_hap6	2612091	2612092	rs34213790	28062682	Carr DF	2017-01-05	J Antimicrob Chemother	Genome-wide association study of nevirapine hypersensitivity in a sub-Saharan African HIV-infected population.	Nevirapine-induced hypersensitivity in HIV	151 Sub-saharan African ancestry cases, 182 Sub-saharan African ancestry controls	62 Sub-Saharan African ancestry cases, 60 Sub-Saharan African ancestry controls	6p21.33	HLA-B	rs34213790-A	0.37	7E-7		2.06	[1.55-2.74]	Illumina [14218511] (imputed)	N
604	chr6_qbl_hap6	2612142	2612143	rs9266043	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-B	rs9266043-A	NR	8E-29		0.035895	[0.03-0.042] unit increase	Affymetrix [323123] (imputed)	N
604	chr6_qbl_hap6	2612297	2612298	rs2596505	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p21.33	NR	rs2596505-T	0.1681	1E-8		0.009	[0.0059-0.0121] unit decrease	NR [7666894] (imputed)	N
604	chr6_qbl_hap6	2612484	2612485	rs9391774	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	6p21.33	HLA-B	rs9391774-A	0.070171	8E-17		0.03854895	[0.029-0.048] unit decrease	Affymetrix [93095623] (imputed)	N
604	chr6_qbl_hap6	2612591	2612592	rs73728881	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.33		rs73728881-C	0.408	8E-101				Affymetrix [10369434] (imputed)	N
604	chr6_qbl_hap6	2612668	2612669	rs2442730	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	6p21.33	HLA-B	rs2442730-A	0.723193	2E-43		0.03767923	[0.032-0.043] unit decrease	Affymetrix [93095623] (imputed)	N
604	chr6_qbl_hap6	2612733	2612734	rs9266059	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs9266059-C	NR	7E-15		0.0219789	[0.016-0.028] unit decrease	Affymetrix [319769] (imputed)	N
604	chr6_qbl_hap6	2612733	2612734	rs9266059	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs9266059-C	NR	1E-13		0.0210357	[0.015-0.027] unit decrease	Affymetrix [319769] (imputed)	N
604	chr6_qbl_hap6	2612733	2612734	rs9266059	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs9266059-C	NR	3E-12		0.0197526	[0.014-0.025] unit increase	Affymetrix [321016] (imputed)	N
604	chr6_qbl_hap6	2612733	2612734	rs9266059	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-B	rs9266059-C	NR	2E-12		0.0216682	[0.016-0.028] unit increase	Affymetrix [323123] (imputed)	N
604	chr6_qbl_hap6	2612733	2612734	rs9266059	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs9266059-C	NR	3E-12		0.0199124	[0.014-0.026] unit decrease	Affymetrix [321169] (imputed)	N
604	chr6_qbl_hap6	2612902	2612903	rs9266063	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs9266063-A	NR	1E-9		0.017108	[0.012-0.023] unit increase	Affymetrix [321016] (imputed)	N
604	chr6_qbl_hap6	2612908	2612909	rs34429926	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	6p21.33	HLA-C, HLA-B	rs34429926-?	NR	3E-29		0.04099494	[0.034-0.048] unit increase	Illumina [27896057] (imputed)	N
604	chr6_qbl_hap6	2612999	2613000	rs9405083	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-B	rs9405083-T	NR	5E-10		0.0221393	[0.015-0.029] unit decrease	Affymetrix [323123] (imputed)	N
604	chr6_qbl_hap6	2613096	2613097	rs4644106	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs4644106-C	NR	9E-14		0.0259517	[0.019-0.033] unit decrease	Affymetrix [319769] (imputed)	N
604	chr6_qbl_hap6	2613096	2613097	rs4644106	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs4644106-C	NR	9E-14		0.0259699	[0.019-0.033] unit decrease	Affymetrix [319769] (imputed)	N
604	chr6_qbl_hap6	2613096	2613097	rs4644106	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-B	rs4644106-C	NR	5E-10		0.0235741	[0.016-0.031] unit increase	Affymetrix [323123] (imputed)	N
604	chr6_qbl_hap6	2613113	2613114	rs28380929	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pneumonia	7,423 East Asian ancestry cases, 171,303 East Asian ancestry controls	NA	6p21.33		rs28380929-T	0.015924804	5E-22		0.70876914	[0.56-0.85] unit increase	Illumina [13429980] (imputed)	N
604	chr6_qbl_hap6	2613392	2613393	rs9266077	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p21.33	XXbac-BPG248L24.12	rs9266077-G	0.149984	4E-50		0.05959745	[0.052-0.067] unit increase	Affymetrix [93095623] (imputed)	N
604	chr6_qbl_hap6	2613409	2613410	rs2442725	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs2442725-T	NR	5E-8		0.0167286	[0.011-0.023] unit decrease	Affymetrix [319769] (imputed)	N
604	chr6_qbl_hap6	2613409	2613410	rs2442725	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs2442725-T	NR	4E-8		0.0167925	[0.011-0.023] unit decrease	Affymetrix [319769] (imputed)	N
604	chr6_qbl_hap6	2613436	2613437	rs36057735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium HDL	115,082 European ancestry individuals	NA	6p21.33		rs36057735-C	0.80097	9E-14		0.0357792	[0.026-0.045] unit increase	NR [11722792] (imputed)	N
604	chr6_qbl_hap6	2613436	2613437	rs36057735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in HDL	115,082 European ancestry individuals	NA	6p21.33		rs36057735-C	0.80097	8E-14		0.0346386	[0.026-0.044] unit increase	NR [11722792] (imputed)	N
604	chr6_qbl_hap6	2613436	2613437	rs36057735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in HDL	115,082 European ancestry individuals	NA	6p21.33		rs36057735-C	0.80097	2E-13		0.0344232	[0.025-0.044] unit increase	NR [11722792] (imputed)	N
604	chr6_qbl_hap6	2613436	2613437	rs36057735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	6p21.33		rs36057735-C	0.80097	5E-14		0.035387	[0.026-0.045] unit increase	NR [11722792] (imputed)	N
604	chr6_qbl_hap6	2613436	2613437	rs36057735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium HDL particles	115,082 European ancestry individuals	NA	6p21.33		rs36057735-C	0.80097	9E-14		0.0354958	[0.026-0.045] unit increase	NR [11722792] (imputed)	N
604	chr6_qbl_hap6	2613436	2613437	rs36057735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium HDL	115,082 European ancestry individuals	NA	6p21.33		rs36057735-C	0.80097	3E-12		0.0333993	[0.024-0.043] unit increase	NR [11722792] (imputed)	N
604	chr6_qbl_hap6	2613436	2613437	rs36057735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	6p21.33		rs36057735-C	0.80097	9E-13		0.0339999	[0.025-0.043] unit increase	NR [11722792] (imputed)	N
604	chr6_qbl_hap6	2613436	2613437	rs36057735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein A1 levels	115,082 European ancestry individuals	NA	6p21.33		rs36057735-C	0.80097	4E-14		0.0357836	[0.027-0.045] unit increase	NR [11722792] (imputed)	N
604	chr6_qbl_hap6	2613436	2613437	rs36057735	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	6p21.33	HLA-B	rs36057735-C	0.800848	3E-35		0.0304388	[0.026-0.035] unit increase	Affymetrix [NR] (imputed)	N
604	chr6_qbl_hap6	2613436	2613437	rs36057735	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling nervous	373,121 European ancestry individuals	NA	6p21.33	NR	rs36057735-C	0.195566	1E-8		5.69	z score increase	NR [10847151] (imputed)	N
604	chr6_qbl_hap6	2613436	2613437	rs36057735	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.33	C6orf15, CCHCR1, CDSN, HCG22, HCG26, HCG27, HCP5, HLA-B, HLA-C, MICA, MIR6891, POU5F1, PSORS1C1, PSORS1C2, PSORS1C3, TCF19	rs36057735-C		2E-12		1.1	[1.07-1.13]	Affymetrix, Illumina [NR]	N
604	chr6_qbl_hap6	2613821	2613822	rs2507993	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large HDL	115,082 European ancestry individuals	NA	6p21.33		rs2507993-C	0.51967	4E-10		0.0257964	[0.018-0.034] unit increase	NR [11722792] (imputed)	N
604	chr6_qbl_hap6	2613821	2613822	rs2507993	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large HDL	115,082 European ancestry individuals	NA	6p21.33		rs2507993-C	0.51967	2E-9		0.0247775	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
604	chr6_qbl_hap6	2613821	2613822	rs2507993	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large HDL particles	115,082 European ancestry individuals	NA	6p21.33		rs2507993-C	0.51967	9E-10		0.0253075	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
604	chr6_qbl_hap6	2613821	2613822	rs2507993	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	6p21.33		rs2507993-C	0.51967	4E-11		0.0271386	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
604	chr6_qbl_hap6	2613821	2613822	rs2507993	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	6p21.33		rs2507993-C	0.51967	4E-11		0.0272976	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
604	chr6_qbl_hap6	2614021	2614022	rs9266089	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Chickenpox	107,769 European ancestry cases, 15,982 European ancestry controls	NA	6p21.33	HLA-B	rs9266089-G	0.85	1E-10		1.12	[1.1-1.14]	Illumina [at least 560000] (imputed)	N
604	chr6_qbl_hap6	2614050	2614051	rs2442719	26039976	Wei Z	2015-06-17	Sci Rep	Genome-Wide Association Studies of HIV-1 Host Control in Ethnically Diverse Chinese Populations.	HIV-1 viral setpoint	326 Han Chinese ancestry cases, 58 Dai Chinese ancestry cases, 40 Jingpo Chinese ancestry cases, 83 Uygur Chinese ancestry cases, 11 Hui Chinese ancestry cases, 20 East Asian cases	NA	6p21.33	HLA-C, HLA-B	rs2442719-A	0.4161	8E-7	(Han)	0.3298	unit decrease	Illumina [up to 528294]	N
604	chr6_qbl_hap6	2614074	2614075	rs2523616	30850646	Tziotzios C	2019-03-08	Nat Commun	Genome-wide association study in frontal fibrosing alopecia identifies four susceptibility loci including HLA-B*07:02.	Frontal fibrosing alopecia	1,016 European ancestry cases, 4,145 European ancestry controls		6p21.33	HLA-B	rs2523616-T	0.19	8E-119		4.73	[4.15-5.39]	Illumina [~ 8000000] (imputed)	N
604	chr6_qbl_hap6	2614133	2614134	rs117598591	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	20,917 European ancestry cases, 440,906 European ancestry controls, 14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	6p21.33		rs117598591-A	NR	3E-20		0.2416	[0.19-0.29] unit increase	Affymetrix, Illumina [25841367] (imputed)	N
604	chr6_qbl_hap6	2614157	2614158	rs11753309	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Non-albumin protein levels	98,538 Japanese ancestry individuals	NA	6p21.33	HLA-C, HLA-B	rs11753309-?	NR	1E-12		0.07675	[0.056-0.098] unit increase novel	Illumina [6108953] (imputed)	N
604	chr6_qbl_hap6	2614157	2614158	rs11753309	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Albumin-globulin ratio	98,626 Japanese ancestry individuals	NA	6p21.33	HLA-C, HLA-B	rs11753309-?	NR	4E-14		0.08157	[0.06-0.103] unit decrease novel	Illumina [6108953] (imputed)	N
604	chr6_qbl_hap6	2614166	2614167	rs2523614	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Naive CD4-CD8- T cell %T cell	3,427 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs2523614-C	0.26364	6E-9		0.1522	[0.1-0.2] unit decrease	Illumina [18349913] (imputed)	N
604	chr6_qbl_hap6	2614166	2614167	rs2523614	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	6p21.33	HLA-C, MICA	rs2523614-T	0.689	6E-10		0.0237097	[0.016-0.031] unit increase	Illumina [13519193] (imputed)	N
604	chr6_qbl_hap6	2614166	2614167	rs2523614	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.33	HLA-C, MICA	rs2523614-T	0.689	2E-7	(men)	0.0253993	[0.016-0.035] unit increase	Illumina [13520550] (imputed)	N
604	chr6_qbl_hap6	2614174	2614175	rs62396264	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs62396264-G	NR	1E-8		0.042766	[0.028-0.057] unit decrease	Affymetrix [321016] (imputed)	N
604	chr6_qbl_hap6	2614361	2614362	rs35735140	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	6p21.33	XXbac-BPG248L24.12	rs35735140-C	0.0632	9E-33		0.08825474	[0.074-0.103] unit increase	Affymetrix [~ 2500000] (imputed)	N
604	chr6_qbl_hap6	2614726	2614727	rs2596501	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs2596501-T	NR	2E-16		0.0231594	[0.018-0.029] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_qbl_hap6	2614726	2614727	rs2596501	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs2596501-T	NR	3E-15		0.0222583	[0.017-0.028] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_qbl_hap6	2614726	2614727	rs2596501	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs2596501-T	NR	7E-10		0.0173579	[0.012-0.023] unit decrease	Affymetrix [321016] (imputed)	N
604	chr6_qbl_hap6	2614726	2614727	rs2596501	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-B	rs2596501-T	NR	5E-11		0.0201678	[0.014-0.026] unit decrease	Affymetrix [323123] (imputed)	N
604	chr6_qbl_hap6	2614726	2614727	rs2596501	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs2596501-T	NR	1E-14		0.0219866	[0.016-0.028] unit increase	Affymetrix [321169] (imputed)	N
604	chr6_qbl_hap6	2614782	2614783	rs2596500	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in ever smokers	23,223 European ancestry cases,  16,964 European ancestry controls	NA	6p21.33	HLA-B	rs2596500-C	0.110809826	2E-15		1.2094321	[1.153908741-1.267627282]	Illumina [10439017] (imputed)	N
604	chr6_qbl_hap6	2614782	2614783	rs2596500	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	6p21.33	NR	rs2596500-A	NR	8E-20		1.18	[NR]	Illumina [7158791] (imputed)	N
604	chr6_qbl_hap6	2614842	2614843	rs9266095	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs9266095-G	NR	1E-9		0.0211771	[0.014-0.028] unit decrease	Affymetrix [321016] (imputed)	N
604	chr6_qbl_hap6	2614922	2614923	rs12196740	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.33	NR	rs12196740-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
604	chr6_qbl_hap6	2614940	2614941	rs9378247	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-B	rs9378247-A	NR	3E-11		0.0265014	[0.019-0.034] unit decrease	Affymetrix [323123] (imputed)	N
604	chr6_qbl_hap6	2615039	2615040	rs2844584	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	6p21.33	NR	rs2844584-?	NR	2E-21	(conditional)			Affymetrix [15688218] (imputed)	N
604	chr6_qbl_hap6	2615172	2615173	rs3177747	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PRSS57	5,358 Icelandic ancestry individuals	NA	6p21.33		rs3177747-A	0.01609	7E-71		1.26085	[1.12-1.4] unit increase	Illumina [7506463] (imputed)	N
604	chr6_qbl_hap6	2617292	2617292	rs5875313	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	6p21.33	HLA-B	rs5875313-?	NR	2E-22		0.039188	[0.031-0.047] unit decrease	Illumina [13520550] (imputed)	N
604	chr6_qbl_hap6	2617720	2617720	rs760342210	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	74,970 East Asian ancestry individuals	NA	6p21.33		rs760342210-GCC	0.376979	5E-8		0.0270505	[0.017-0.037] unit increase	Illumina [13465896] (imputed)	N
604	chr6_qbl_hap6	2617888	2617889	rs4999718	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	6p21.33	HLA-B	rs4999718-A	0.630768	4E-11		0.0144802	[0.01-0.019] unit decrease	Affymetrix [NR] (imputed)	N
604	chr6_qbl_hap6	2618836	2618837	rs9266229	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.33	NR	rs9266229-C	NR	4E-9		0.023	unit decrease	Affymetrix [at least 7091467] (imputed)	N
604	chr6_qbl_hap6	2618836	2618837	rs9266229	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.33	NR	rs9266229-C	0.53	1E-9	(EA)	0.026	unit decrease	Affymetrix [at least 7091467] (imputed)	N
604	chr6_qbl_hap6	2618836	2618837	rs9266229	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.33	NR	rs9266229-C	NR	3E-10		0.027	unit decrease	Affymetrix [at least 7091467] (imputed)	N
604	chr6_qbl_hap6	2618836	2618837	rs9266229	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.33	NR	rs9266229-C	0.53	2E-10	(EA)	0.03	unit decrease	Affymetrix [at least 7091467] (imputed)	N
604	chr6_qbl_hap6	2618836	2618837	rs9266229	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.33	NR	rs9266229-C	NR	1E-6		0.021	unit decrease	Affymetrix [at least 7091467] (imputed)	N
604	chr6_qbl_hap6	2618836	2618837	rs9266229	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.33	NR	rs9266229-C	0.53	1E-6	(EA)	0.023	unit decrease	Affymetrix [at least 7091467] (imputed)	N
604	chr6_qbl_hap6	2618855	2618856	rs9266230	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	6p21.33	NR	rs9266230-G	0.359851	1E-35		0.0263621	[0.022-0.031] unit decrease	NR [NR]	N
604	chr6_qbl_hap6	2618956	2618957	rs114777460	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mumps	31,227 European ancestry cases, 54,153 European ancestry controls	NA	6p21.33	NR	rs114777460-?	NR	4E-6		0.1022	[0.058-0.146] unit decrease	Illumina [at least 560000] (imputed)	N
604	chr6_qbl_hap6	2619034	2619035	rs9266237	31527586	An J	2019-09-16	Nat Commun	Gastroesophageal reflux GWAS identifies risk loci that also associate with subsequent severe esophageal diseases.	Gastroesophageal reflux disease	80,265 European and unknown ancestry cases, 305,011 European and unknown ancestry controls	NA	6p21.33	MICA, HLA-B	rs9266237-C	NR	2E-11		1.0409149	[1.03-1.05]	Affymetrix, Illumina [up to 7600000] (imputed)	N
604	chr6_qbl_hap6	2619205	2619206	rs9266244	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs9266244-G	NR	2E-20		0.0316292	[0.025-0.038] unit decrease	Affymetrix [323858] (imputed)	N
604	chr6_qbl_hap6	2619205	2619206	rs9266244	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	6p21.33	HLA-B	rs9266244-A	0.7077	1E-94		0.0427	[0.039-0.047] unit decrease	Affymetrix [18391927] (imputed)	N
604	chr6_qbl_hap6	2619215	2619216	rs9266245	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs9266245-A	NR	1E-17		0.0293064	[0.023-0.036] unit decrease	Affymetrix [127266] (imputed)	N
604	chr6_qbl_hap6	2619215	2619216	rs9266245	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs9266245-A	NR	4E-9		0.0199304	[0.013-0.027] unit decrease	Affymetrix [323858] (imputed)	N
604	chr6_qbl_hap6	2619215	2619216	rs9266245	30003630	Minica CC	2018-07-13	Addiction	GENOME-WIDE ASSOCIATION META-ANALYSIS OF AGE AT FIRST CANNABIS USE.	Cannabis use (age at onset)	24,953 European ancestry individuals	3,735 European ancestry individuals	6p21.33	NR	rs9266245-A	0.2655	5E-6		0.06	[0.033-0.087] unit decrease	Affymetrix, Illumina, Perlegen [6163759] (imputed)	N
604	chr6_qbl_hap6	2619258	2619259	rs74618856	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs74618856-T	NR	3E-13		0.0210177	[0.015-0.027] unit decrease	Affymetrix [321169] (imputed)	N
604	chr6_qbl_hap6	2619271	2619272	rs9266248	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs9266248-G	NR	5E-11		0.0206568	[0.014-0.027] unit decrease	Affymetrix [323858] (imputed)	N
604	chr6_qbl_hap6	2619271	2619272	rs9266248	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs9266248-G	NR	6E-10		0.0194387	[0.013-0.026] unit decrease	Affymetrix [127266] (imputed)	N
604	chr6_qbl_hap6	2619305	2619306	rs9266250	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs9266250-A	NR	5E-20		0.0288475	[0.023-0.035] unit increase	Affymetrix [323123] (imputed)	N
604	chr6_qbl_hap6	2619360	2619361	rs9266253	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs9266253-G	NR	8E-10		0.021803	[0.015-0.029] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_qbl_hap6	2619360	2619361	rs9266253	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs9266253-G	NR	6E-10		0.0219864	[0.015-0.029] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_qbl_hap6	2619364	2619365	rs28694041	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs28694041-G	NR	4E-17		0.0237224	[0.018-0.029] unit decrease	Affymetrix [321016] (imputed)	N
604	chr6_qbl_hap6	2619394	2619395	rs9266255	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6p21.33		rs9266255-G	0.51289	7E-12		0.0273638	[0.02-0.035] unit increase	NR [11722792] (imputed)	N
604	chr6_qbl_hap6	2619394	2619395	rs9266255	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs9266255-A	NR	1E-9		0.0189485	[0.013-0.025] unit increase	Affymetrix [323858] (imputed)	N
604	chr6_qbl_hap6	2619394	2619395	rs9266255	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs9266255-A	NR	2E-20		0.0284303	[0.022-0.034] unit decrease	Affymetrix [323123] (imputed)	N
604	chr6_qbl_hap6	2619394	2619395	rs9266255	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	6p21.33	HLA-B	rs9266255-A	0.485918	3E-10		0.015893243	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
604	chr6_qbl_hap6	2619399	2619400	rs9266257	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	6p21.33		rs9266257-G	0.332679	3E-14		0.0320363	[0.024-0.04] unit increase	NR [11722792] (imputed)	N
604	chr6_qbl_hap6	2619399	2619400	rs9266257	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	6p21.33		rs9266257-G	0.332679	2E-18		0.036957	[0.029-0.045] unit increase	NR [11722792] (imputed)	N
604	chr6_qbl_hap6	2619399	2619400	rs9266257	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	6p21.33	Intergenic	rs9266257-G	0.2867	3E-10		0.0158	[0.011-0.021] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
604	chr6_qbl_hap6	2619399	2619400	rs9266257	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	6p21.33	Intergenic	rs9266257-C	0.6642	1E-12	(MTAG)	0.0175	[0.013-0.022] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
604	chr6_qbl_hap6	2619594	2619595	rs9266271	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.33		rs9266271-T	0.645	8E-27				Affymetrix [10369434] (imputed)	N
604	chr6_qbl_hap6	2619594	2619595	rs9266271	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs9266271-C	NR	6E-18		0.0254246	[0.02-0.031] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_qbl_hap6	2619594	2619595	rs9266271	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs9266271-C	NR	6E-17		0.0246745	[0.019-0.03] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_qbl_hap6	2619594	2619595	rs9266271	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs9266271-C	NR	1E-12		0.0209457	[0.015-0.027] unit decrease	Affymetrix [321016] (imputed)	N
604	chr6_qbl_hap6	2619594	2619595	rs9266271	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs9266271-C	NR	3E-8		0.0177807	[0.011-0.024] unit decrease	Affymetrix [323123] (imputed)	N
604	chr6_qbl_hap6	2619594	2619595	rs9266271	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs9266271-C	NR	2E-13		0.0220232	[0.016-0.028] unit increase	Affymetrix [321169] (imputed)	N
604	chr6_qbl_hap6	2619595	2619596	rs62396273	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs62396273-T	NR	1E-15		0.0313037	[0.024-0.039] unit decrease	Affymetrix [321016] (imputed)	N
604	chr6_qbl_hap6	2619595	2619596	rs62396273	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs62396273-T	NR	2E-8		0.023758	[0.015-0.032] unit decrease	Affymetrix [323123] (imputed)	N
604	chr6_qbl_hap6	2619643	2619644	rs73390208	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	6p21.33		rs73390208-C	0.728652	1E-9		0.028278	[0.019-0.037] unit decrease	NR [11722792] (imputed)	N
604	chr6_qbl_hap6	2619643	2619644	rs73390208	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs73390208-T	NR	2E-8		0.0177817	[0.012-0.024] unit decrease	Affymetrix [321016] (imputed)	N
604	chr6_qbl_hap6	2619678	2619679	rs4947311	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hypothyroidism	1,114 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	6p21.33		rs4947311-T	0.840267659	5E-8		0.32545814	[0.21-0.44] unit increase	Illumina [13429045] (imputed)	N
604	chr6_qbl_hap6	2619678	2619679	rs4947311	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs4947311-T	NR	3E-8		0.0173305	[0.011-0.023] unit increase	Affymetrix [127266] (imputed)	N
604	chr6_qbl_hap6	2619678	2619679	rs4947311	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	6p21.33	HLA-B	rs4947311-T	0.491335	1E-26		0.023138076	[0.019-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
604	chr6_qbl_hap6	2619678	2619679	rs4947311	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	6p21.33	HLA-B	rs4947311-T	0.4917	6E-26		0.03719869	[0.03-0.044] unit decrease	Affymetrix [~ 2500000] (imputed)	N
604	chr6_qbl_hap6	2619699	2619699	rs112261624	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p21.33	HLA-B	rs112261624-ATTG	0.126731	3E-11		0.025527913	[0.018-0.033] unit increase	Affymetrix [93095623] (imputed)	N
604	chr6_qbl_hap6	2619735	2619736	rs2596474	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs2596474-G	NR	1E-8		0.0167607	[0.011-0.023] unit increase	Affymetrix [321169] (imputed)	N
604	chr6_qbl_hap6	2619763	2619764	rs9405084	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs9405084-T	NR	1E-13		0.0243425	[0.018-0.031] unit decrease	Affymetrix [323123] (imputed)	N
604	chr6_qbl_hap6	2619763	2619764	rs9405084	32488134	Auckland K	2020-06-02	Sci Rep	The Human Leukocyte Antigen Locus and Rheumatic Heart Disease Susceptibility in South Asians and Europeans.	Rheumatic heart disease	510 Northern Indian cases, 344 Northern Indian controls, 162 Fijian Indian cases, 147 Fijian Indian controls	150 European ancestry cases, 1,309 European ancestry controls	6p21.33	HLA-B	rs9405084-?		3E-6		1.36	[1.19-1.55]	Illumina [6925553] (imputed)	N
604	chr6_qbl_hap6	2619763	2619764	rs9405084	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	Composite immunoglobulin trait (IgA/IgM)	14,183 Icelandic ancestry individuals	2,146 Swedish ancestry individuals	6p21.33	HLA-B	rs9405084-T	0.3546	8E-13		0.09	NR SD units decrease	Illumina [21568490] (imputed)	N
604	chr6_qbl_hap6	2619784	2619785	rs9266276	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	6p21.33	NR	rs9266276-?	NR	1E-10		0.0815	[0.057-0.106] unit decrease	Illumina [at least 560000] (imputed)	N
604	chr6_qbl_hap6	2619801	2619802	rs9378248	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6p21.33		rs9378248-G	0.658186	5E-12		0.0289275	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
604	chr6_qbl_hap6	2619801	2619802	rs9378248	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to monounsaturated fatty acids	115,006 European ancestry individuals	NA	6p21.33		rs9378248-G	0.658178	1E-9		0.0253981	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
604	chr6_qbl_hap6	2619801	2619802	rs9378248	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of monounsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	6p21.33		rs9378248-G	0.658178	5E-12		0.0287948	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
604	chr6_qbl_hap6	2619801	2619802	rs9378248	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	6p21.33		rs9378248-G	0.658186	6E-9		0.0251651	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
604	chr6_qbl_hap6	2619801	2619802	rs9378248	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6p21.33		rs9378248-G	0.658186	2E-15		0.0323775	[0.024-0.04] unit increase	NR [11722792] (imputed)	N
604	chr6_qbl_hap6	2619801	2619802	rs9378248	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6p21.33		rs9378248-G	0.658186	3E-12		0.0285178	[0.021-0.036] unit increase	NR [11722792] (imputed)	N
604	chr6_qbl_hap6	2619801	2619802	rs9378248	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6p21.33		rs9378248-G	0.658186	2E-15		0.0327076	[0.025-0.041] unit increase	NR [11722792] (imputed)	N
604	chr6_qbl_hap6	2619801	2619802	rs9378248	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6p21.33		rs9378248-G	0.658186	5E-12		0.028241	[0.02-0.036] unit increase	NR [11722792] (imputed)	N
604	chr6_qbl_hap6	2619801	2619802	rs9378248	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs9378248-A	NR	3E-12		0.0207417	[0.015-0.027] unit decrease	Affymetrix [321016] (imputed)	N
604	chr6_qbl_hap6	2619801	2619802	rs9378248	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	6p21.33	HLA-B	rs9378248-G	0.657666	3E-54		0.0324826	[0.028-0.037] unit decrease	Affymetrix [NR] (imputed)	N
604	chr6_qbl_hap6	2619801	2619802	rs9378248	31589552	Lind L	2019-10-07	Metab Syndr Relat Disord	Genome-Wide Association Study of the Metabolic Syndrome in UK Biobank.	Metabolic syndrome	291,107 European ancestry individuals	NA	6p21.33	HLA-B	rs9378248-A	0.339668	2E-10		0.0440684	[0.031-0.058] unit increase	Affymetrix [9463307] (imputed)	N
604	chr6_qbl_hap6	2619801	2619802	rs9378248	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	6p21.33	Intergenic	rs9378248-A	0.386	7E-10	(MTAG)	0.0105	[0.0072-0.0138] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
604	chr6_qbl_hap6	2619801	2619802	rs9378248	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6p21.33	Intergenic	rs9378248-A	0.3659	8E-10	(MTAG)	0.0086	[0.0059-0.0113] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
604	chr6_qbl_hap6	2620435	2620436	rs2395475	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs2395475-G	NR	1E-18		0.0259014	[0.02-0.032] unit decrease	Affymetrix [321169] (imputed)	N
604	chr6_qbl_hap6	2620475	2620476	rs2523591	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p21.33	HLA-B	rs2523591-G	0.58	2E-27		1.14	[1.13-1.16]	Illumina [at least 560000] (imputed)	N
604	chr6_qbl_hap6	2620549	2620550	rs116666910	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	6p21.33	HLA-B	rs116666910-A	0.042838	3E-36		0.07363684	[0.062-0.085] unit increase	Affymetrix [93095623] (imputed)	N
604	chr6_qbl_hap6	2620579	2620580	rs2523590	35215271	Almandil NB	2022-01-27	Pharmaceuticals (Basel)	Integration of Transcriptome and Exome Genotyping Identifies Significant Variants with Autism Spectrum Disorder.	Autism spectrum disorder	70 Arab ancestry cases, 132 Arab ancestry controls	NA	6p21.33	NA	rs2523590-G	0.4059	2E-6		0.2661	[0.1511-0.4689]	Illumina [243345]	N
604	chr6_qbl_hap6	2620579	2620580	rs2523590	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Anxiety	at least 23,606 European ancestry cases, at least 113,351 European ancestry controls	624,615 European ancestry cases, 1,310,854 European ancestry controls	6p21.33	XXbac, BPG248L24.12	rs2523590-T	0.3002	2E-17		0.020998826	[0.015-0.027] unit decrease	NR [9417325] (imputed)	N
604	chr6_qbl_hap6	2620579	2620580	rs2523590	21051598	Pereyra F	2010-11-04	Science	The major genetic determinants of HIV-1 control affect HLA class I peptide presentation.	HIV-1 control	516 European cases, 1,196 European controls, 341 African American cases, 892 African American controls, 117 Hispanic cases, 560 Hispanic controls	NA	6p21.33	HLA-B	rs2523590-C	0.164	2E-13	(AA)	2.4	[NR]	Illumina [1384048] (imputed)	N
604	chr6_qbl_hap6	2620693	2620694	rs2249935	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs2249935-A	NR	2E-11		0.02495	[0.018-0.032] unit decrease	Affymetrix [323858] (imputed)	N
604	chr6_qbl_hap6	2620693	2620694	rs2249935	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs2249935-A	NR	2E-10		0.0236711	[0.016-0.031] unit decrease	Affymetrix [127266] (imputed)	N
604	chr6_qbl_hap6	2620693	2620694	rs2249935	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs2249935-A	NR	6E-9		0.0213066	[0.014-0.028] unit increase	Affymetrix [323123] (imputed)	N
604	chr6_qbl_hap6	2620693	2620694	rs2249935	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	6p21.33	HLA-B	rs2249935-A	0.226813	5E-14		0.022285966	[0.016-0.028] unit increase	Affymetrix [93095623] (imputed)	N
604	chr6_qbl_hap6	2620848	2620849	rs2523589	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2523589-G	0.504575	7E-11		0.0266546	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
604	chr6_qbl_hap6	2620848	2620849	rs2523589	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CDH7	5,355 Icelandic ancestry individuals	NA	6p21.33		rs2523589-G	0.4994	3E-12		0.128281	[0.092-0.164] unit increase	Illumina [7506463] (imputed)	N
604	chr6_qbl_hap6	2620848	2620849	rs2523589	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs2523589-T	NR	4E-15		0.0220143	[0.017-0.028] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_qbl_hap6	2620848	2620849	rs2523589	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs2523589-T	NR	5E-9		0.0182205	[0.012-0.024] unit increase	Affymetrix [323858] (imputed)	N
604	chr6_qbl_hap6	2620848	2620849	rs2523589	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs2523589-T	NR	8E-14		0.0209932	[0.015-0.026] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_qbl_hap6	2620848	2620849	rs2523589	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs2523589-T	NR	3E-10		0.0176998	[0.012-0.023] unit decrease	Affymetrix [321016] (imputed)	N
604	chr6_qbl_hap6	2620848	2620849	rs2523589	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs2523589-T	NR	2E-15		0.0225538	[0.017-0.028] unit increase	Affymetrix [321169] (imputed)	N
604	chr6_qbl_hap6	2620848	2620849	rs2523589	33608531	Wu Y	2021-02-19	Nat Commun	GWAS of peptic ulcer disease implicates Helicobacter pylori infection, other gastrointestinal disorders and depression.	Gastroesophageal reflux disease	54,854 European ancestry cases, 401,473 European ancestry controls	NA	6p21.33	NR	rs2523589-G	0.5	5E-13		0.95	[NR]	NR [8546065] (imputed)	N
604	chr6_qbl_hap6	2620848	2620849	rs2523589	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (salicylic acid and derivatives)	61,583 European ancestry cases, 50,427 European ancestry controls	NA	6p21.33	HLA-B	rs2523589-T	0.495166	2E-8		0.044395193	[0.029-0.06] unit increase	Affymetrix [7288503] (imputed)	N
604	chr6_qbl_hap6	2620848	2620849	rs2523589	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.33		rs2523589-T	0.5109049999999999	2E-54		1.0677866	[1.06-1.08]	Affymetrix, Illumina [9851866] (imputed)	N
604	chr6_qbl_hap6	2620914	2620915	rs2523587	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	6p21.33	Intergenic	rs2523587-T	0.3377	3E-8	(MTAG)	0.0105	[0.0068-0.0142] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
604	chr6_qbl_hap6	2621174	2621175	rs1811197	27157822	Hallberg P	2016-05-03	Lancet Diabetes Endocrinol	Genetic variants associated with antithyroid drug-induced agranulocytosis: a genome-wide association study in a European population.	Non-chemotherapy drug induced agranulocytosis	222 European ancestry cases, 12 cases, 5,170 European ancestry controls	NA	6p21.33	NR	rs1811197-?	NR	9E-13	(adjusted for rs114291795)	2.4	[1.89-3.06]	Illumina [9380034] (imputed)	N
604	chr6_qbl_hap6	2621183	2621184	rs116812356	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	6p21.33	HLA-B	rs116812356-C	0.084787	1E-13		0.029957736	[0.022-0.038] unit increase	Affymetrix [93095623] (imputed)	N
604	chr6_qbl_hap6	2621215	2621216	rs9378249	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p21.33	NR	rs9378249-T	0.936677	4E-192				Affymetrix, Illumina [17210439] (imputed)	N
604	chr6_qbl_hap6	2621215	2621216	rs9378249	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	6p21.33	NR	rs9378249-T	0.935134	6E-196		0.116523	[0.11-0.12] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
604	chr6_qbl_hap6	2621215	2621216	rs9378249	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	6p21.33	HLA-B	rs9378249-G	0.0655	1E-53		0.112675	[0.098-0.127] unit decrease	Affymetrix [~ 2500000] (imputed)	N
604	chr6_qbl_hap6	2621215	2621216	rs9378249	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	6p21.33	HLA-B	rs9378249-G	0.0649	7E-35		0.08896168	[0.075-0.103] unit increase	Affymetrix [~ 2500000] (imputed)	N
604	chr6_qbl_hap6	2621215	2621216	rs9378249	21254220	Jiang Y	2011-02-01	Genet Epidemiol	Propensity score-based nonparametric test revealing genetic variants underlying bipolar disorder.	Bipolar disorder	1,868 European ancestry cases, 2,938 European ancestry controls	NA	6p21.33	NR	rs9378249-?	NR	1E-8	(addtive)			Affymetrix [NR]	N
604	chr6_qbl_hap6	2621237	2621238	rs2596477	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p21.33	NR	rs2596477-A	0.124	2E-14	(IFNAR2_of_CD20p)			Illumina [5084123] (imputed)	N
604	chr6_qbl_hap6	2621256	2621257	rs116010992	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in IDL	115,082 European ancestry individuals	NA	6p21.33		rs116010992-G	0.944836	2E-8		0.0511498	[0.033-0.069] unit increase	NR [11722792] (imputed)	N
604	chr6_qbl_hap6	2621256	2621257	rs116010992	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in IDL	115,082 European ancestry individuals	NA	6p21.33		rs116010992-G	0.944836	7E-9		0.0521223	[0.034-0.07] unit increase	NR [11722792] (imputed)	N
604	chr6_qbl_hap6	2621256	2621257	rs116010992	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in IDL	115,082 European ancestry individuals	NA	6p21.33		rs116010992-G	0.944836	7E-9		0.0521034	[0.034-0.07] unit increase	NR [11722792] (imputed)	N
604	chr6_qbl_hap6	2621271	2621272	rs28695590	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs28695590-C	NR	1E-9		0.0254929	[0.017-0.034] unit increase	Affymetrix [323858] (imputed)	N
604	chr6_qbl_hap6	2621271	2621272	rs28695590	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs28695590-C	NR	2E-9		0.0254506	[0.017-0.034] unit increase	Affymetrix [127266] (imputed)	N
604	chr6_qbl_hap6	2621409	2621410	rs2523583	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	6p21.33	XXbac-BPG248L24.12	rs2523583-A	0.7315	5E-7		0.0528	[0.032-0.073] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
604	chr6_qbl_hap6	2621419	2621420	rs7767033	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p21.33		rs7767033-C	0.911783	6E-11		0.0460216	[0.032-0.06] unit decrease	NR [11722792] (imputed)	N
604	chr6_qbl_hap6	2621419	2621420	rs7767033	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p21.33		rs7767033-C	0.911783	3E-10		0.0446058	[0.031-0.058] unit increase	NR [11722792] (imputed)	N
605	chr6_qbl_hap6	2622031	2622032	rs2523579	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs2523579-T	NR	5E-20		0.0268404	[0.021-0.033] unit increase	Affymetrix [321016] (imputed)	N
605	chr6_qbl_hap6	2622031	2622032	rs2523579	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs2523579-T	NR	6E-23		0.0313944	[0.025-0.038] unit increase	Affymetrix [323123] (imputed)	N
605	chr6_qbl_hap6	2622056	2622057	rs2523578	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.33	XXbac-BPG248L24.12	rs2523578-A	0.735	6E-12		0.0561	[0.04-0.072] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
605	chr6_qbl_hap6	2622270	2622271	rs9266289	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.33	NR	rs9266289-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
605	chr6_qbl_hap6	2622400	2622401	rs7772305	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs7772305-G	NR	1E-17		0.0277083	[0.021-0.034] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_qbl_hap6	2622400	2622401	rs7772305	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs7772305-G	NR	4E-10		0.0221253	[0.015-0.029] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_qbl_hap6	2622502	2622503	rs2523573	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	6p21.33	NR	rs2523573-C	0.083499	2E-9		0.077368595	[0.052-0.103] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
605	chr6_qbl_hap6	2622502	2622503	rs2523573	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	6p21.33	NR	rs2523573-C	0.083499	3E-11		0.07532035	[0.053-0.098] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
605	chr6_qbl_hap6	2622543	2622544	rs114029601	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p21.33		rs114029601-?	NR	2E-13		0.0823935	[0.06-0.104] unit increase	Affymetrix [20259828] (imputed)	N
605	chr6_qbl_hap6	2622543	2622544	rs114029601	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs114029601-T	0.024	1E-175	(alpha-2-macroglobulin receptor-associated protein, LRPAP1.3640.14.3)	2.11	[1.97-2.25] unit increase	Affymetrix [10572788] (imputed)	N
605	chr6_qbl_hap6	2622543	2622544	rs114029601	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs114029601-T	0.024	1E-132	(alpha-2-macroglobulin receptor-associated protein, LRPAP1.8829.4.3)	1.88	[1.72-2.04] unit increase	Affymetrix [10572788] (imputed)	N
605	chr6_qbl_hap6	2622607	2622608	rs7772614	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs7772614-A	NR	2E-17		0.0245966	[0.019-0.03] unit decrease	Affymetrix [319769] (imputed)	N
605	chr6_qbl_hap6	2622607	2622608	rs7772614	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs7772614-A	NR	4E-16		0.0235888	[0.018-0.029] unit decrease	Affymetrix [319769] (imputed)	N
605	chr6_qbl_hap6	2622607	2622608	rs7772614	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs7772614-A	NR	9E-15		0.0224619	[0.017-0.028] unit increase	Affymetrix [321016] (imputed)	N
605	chr6_qbl_hap6	2622607	2622608	rs7772614	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs7772614-A	NR	3E-22		0.0306127	[0.024-0.037] unit increase	Affymetrix [323123] (imputed)	N
605	chr6_qbl_hap6	2622607	2622608	rs7772614	32358547	Persyn E	2020-05-01	Nat Commun	Genome-wide association study of MRI markers of cerebral small vessel disease in 42,310 participants.	White matter integrity (mean diffusivity)	17,467 European ancestry individuals	NA	6p21.33	HLA-B, HLA-S	rs7772614-A	0.379354	8E-10		0.272022	[0.19-0.36] unit decrease	Affymetrix [NR] (imputed)	N
605	chr6_qbl_hap6	2622649	2622650	rs2428493	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.33		rs2428493-C	0.59	3E-29				Affymetrix [10369434] (imputed)	N
605	chr6_qbl_hap6	2622649	2622650	rs2428493	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p21.33		rs2428493-C	0.59	2E-11				Affymetrix [10369434] (imputed)	N
605	chr6_qbl_hap6	2622649	2622650	rs2428493	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs2428493-A	NR	1E-8		0.0162701	[0.011-0.022] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_qbl_hap6	2622649	2622650	rs2428493	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs2428493-A	NR	2E-8		0.0160422	[0.01-0.022] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_qbl_hap6	2622649	2622650	rs2428493	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs2428493-A	NR	3E-8		0.0172826	[0.011-0.023] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_qbl_hap6	2622649	2622650	rs2428493	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs2428493-A	NR	4E-8		0.0158728	[0.01-0.022] unit increase	Affymetrix [321169] (imputed)	N
605	chr6_qbl_hap6	2622805	2622806	rs2596544	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs2596544-A	NR	4E-11		0.0250182	[0.018-0.032] unit decrease	Affymetrix [323858] (imputed)	N
605	chr6_qbl_hap6	2622805	2622806	rs2596544	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs2596544-A	NR	2E-10		0.0239529	[0.017-0.031] unit decrease	Affymetrix [127266] (imputed)	N
605	chr6_qbl_hap6	2622805	2622806	rs2596544	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.33	NR	rs2596544-?	NR	7E-14				Affymetrix [~ 8270000] (imputed)	N
605	chr6_qbl_hap6	2622879	2622880	rs2428491	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs2428491-T	NR	7E-9		0.018086	[0.012-0.024] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_qbl_hap6	2622879	2622880	rs2428491	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs2428491-T	NR	3E-8		0.0160184	[0.01-0.022] unit increase	Affymetrix [321169] (imputed)	N
605	chr6_qbl_hap6	2622980	2622981	rs76518703	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.33		rs76518703-G	0.051012999999999975	4E-21		1.0960608	[1.08-1.11]	Affymetrix, Illumina [9851866] (imputed)	N
605	chr6_qbl_hap6	2622992	2622993	rs62396280	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p21.33		rs62396280-G	0.938983	7E-13		0.0589889	[0.043-0.075] unit increase	NR [11722792] (imputed)	N
605	chr6_qbl_hap6	2622992	2622993	rs62396280	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p21.33		rs62396280-G	0.938983	3E-13		0.0597272	[0.044-0.076] unit increase	NR [11722792] (imputed)	N
605	chr6_qbl_hap6	2622992	2622993	rs62396280	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	6p21.33		rs62396280-G	0.938983	5E-13		0.0604292	[0.044-0.077] unit increase	NR [11722792] (imputed)	N
605	chr6_qbl_hap6	2623156	2623157	rs2596547	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MICB	5,339 Icelandic ancestry individuals	NA	6p21.33		rs2596547-T	0.08274	1E-46		0.447301	[0.39-0.51] unit decrease	Illumina [7506463] (imputed)	N
605	chr6_qbl_hap6	2623205	2623206	rs2523571	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Sjogren's syndrome	1,296 European ancestry cases, 482,717 European ancestry controls, 303 East Asian ancestry cases, 175,599 East Asian ancestry controls	NA	6p21.33		rs2523571-A	NR	6E-28		0.709	[0.58-0.84] unit increase	Affymetrix, Illumina [25844664] (imputed)	N
605	chr6_qbl_hap6	2623248	2623249	rs2523570	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs2523570-T	NR	1E-9		0.0207915	[0.014-0.027] unit increase	Affymetrix [321114] (imputed)	N
605	chr6_qbl_hap6	2623248	2623249	rs2523570	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	HLA-B, XXbac-BPG248L24.12, HLA-C, DHFRP2, RNU6-283P	rs2523570-T	0.1732125	3E-22	(EA, MHC class I polypeptide-related sequence A)	0.5698	[0.46-0.68] unit increase	Affymetrix [509946]	N
605	chr6_qbl_hap6	2623529	2623530	rs2523567	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	DHFRP2	rs2523567-G	NR	1E-8		0.019102	[0.013-0.026] unit decrease	Affymetrix [321169] (imputed)	N
605	chr6_qbl_hap6	2624132	2624133	rs2523562	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	6p21.33		rs2523562-C	0.75	5E-23				Affymetrix [10369434] (imputed)	N
605	chr6_qbl_hap6	2624132	2624133	rs2523562	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	6p21.33	DHFRP2	rs2523562-T	0.248438	2E-53		0.043959104	[0.038-0.05] unit decrease	Affymetrix [93095623] (imputed)	N
605	chr6_qbl_hap6	2624132	2624133	rs2523562	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p21.33	NR	rs2523562-T	0.231793	1E-216				Affymetrix, Illumina [23467995] (imputed)	N
605	chr6_qbl_hap6	2624132	2624133	rs2523562	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	6p21.33	NR	rs2523562-T	0.245752	2E-218		0.068474	[0.064-0.073] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
605	chr6_qbl_hap6	2624211	2624212	rs2523561	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	6p21.33		rs2523561-T	0.0841863	4E-21		0.22455621	[0.18-0.27] unit increase	Illumina [13427135] (imputed)	N
605	chr6_qbl_hap6	2624303	2624304	rs9266329	34642315	Ferreiro-Iglesias A	2021-10-12	Nat Commun	Germline determinants of humoral immune response to HPV-16 protect against oropharyngeal cancer.	Human papilloma virus 16 positive oropharyngeal cancer	1,078 European ancestry cases, 5,256 European ancestry controls	NA	6p21.33		rs9266329-A	NR	1E-12		0.6064		Illumina [7574753] (imputed)	N
605	chr6_qbl_hap6	2624484	2624485	rs2523559	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	145,505 East Asian ancestry individuals	NA	6p21.33		rs2523559-A	0.856226	1E-8		0.0270292	[0.018-0.036] unit decrease	Illumina [13477770] (imputed)	N
605	chr6_qbl_hap6	2624552	2624553	rs2523558	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	DHFRP2	rs2523558-G	NR	5E-17		0.0239075	[0.018-0.029] unit decrease	Affymetrix [319769] (imputed)	N
605	chr6_qbl_hap6	2624552	2624553	rs2523558	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	DHFRP2	rs2523558-G	NR	1E-15		0.022827	[0.017-0.028] unit decrease	Affymetrix [319769] (imputed)	N
605	chr6_qbl_hap6	2624552	2624553	rs2523558	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	DHFRP2	rs2523558-G	NR	2E-18		0.025264	[0.02-0.031] unit decrease	Affymetrix [321169] (imputed)	N
605	chr6_qbl_hap6	2624764	2624765	rs2523557	26190474	Dai Y	2015-07-20	Sci Rep	Performance of genetic risk factors in prediction of trichloroethylene induced hypersensitivity syndrome.	Trichloroethylene-induced hypersensitivity syndrome	98 Han Chinese ancestry cases, 98 Han Chinese ancestry trichloroethylene-tolerant controls	Up to 74 Han Chinese ancestry cases, up to 1,661 Han Chinese ancestry trichloroethylene-tolerant controls	6p21.33	HLA-B, MICA	rs2523557-C	0.13	9E-35		7.33	[5.34-10.07]	Illumina [1392644]	N
605	chr6_qbl_hap6	2625007	2625008	rs4959062	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	DHFRP2	rs4959062-G	NR	7E-12		0.0197814	[0.014-0.025] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_qbl_hap6	2625023	2625024	rs9266344	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antithrombotic agents)	67,653 European ancestry cases, 85,986 European ancestry controls, 54,220 East Asian ancestry cases, 124,506 East Asian ancestry controls	NA	6p21.33		rs9266344-C	NR	1E-15		0.0792	[0.06-0.099] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
605	chr6_qbl_hap6	2625204	2625205	rs4959063	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol minus HDL-C levels	115,082 European ancestry individuals	NA	6p21.33		rs4959063-C	0.79261	4E-9		0.0298904	[0.02-0.04] unit decrease	NR [11722792] (imputed)	N
605	chr6_qbl_hap6	2625204	2625205	rs4959063	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Remnant cholesterol (non-HDL, non-LDL -cholesterol)	115,082 European ancestry individuals	NA	6p21.33		rs4959063-C	0.79261	8E-10		0.0312509	[0.021-0.041] unit decrease	NR [11722792] (imputed)	N
605	chr6_qbl_hap6	2625204	2625205	rs4959063	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in IDL	115,082 European ancestry individuals	NA	6p21.33		rs4959063-C	0.79261	2E-8		0.0277784	[0.018-0.037] unit decrease	NR [11722792] (imputed)	N
605	chr6_qbl_hap6	2625204	2625205	rs4959063	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	6p21.33		rs4959063-C	0.79261	1E-9		0.0304695	[0.021-0.04] unit decrease	NR [11722792] (imputed)	N
605	chr6_qbl_hap6	2625204	2625205	rs4959063	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	6p21.33		rs4959063-C	0.79261	2E-10		0.0327736	[0.023-0.043] unit decrease	NR [11722792] (imputed)	N
605	chr6_qbl_hap6	2625204	2625205	rs4959063	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	6p21.33		rs4959063-C	0.79261	2E-10		0.0324692	[0.022-0.042] unit decrease	NR [11722792] (imputed)	N
605	chr6_qbl_hap6	2625204	2625205	rs4959063	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small LDL particles	115,082 European ancestry individuals	NA	6p21.33		rs4959063-C	0.79261	1E-8		0.0290147	[0.019-0.039] unit decrease	NR [11722792] (imputed)	N
605	chr6_qbl_hap6	2625204	2625205	rs4959063	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium LDL particles	115,082 European ancestry individuals	NA	6p21.33		rs4959063-C	0.79261	2E-8		0.0287151	[0.019-0.039] unit decrease	NR [11722792] (imputed)	N
605	chr6_qbl_hap6	2625204	2625205	rs4959063	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large LDL particles	115,082 European ancestry individuals	NA	6p21.33		rs4959063-C	0.79261	6E-10		0.0315332	[0.022-0.042] unit decrease	NR [11722792] (imputed)	N
605	chr6_qbl_hap6	2625204	2625205	rs4959063	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of LDL particles	115,082 European ancestry individuals	NA	6p21.33		rs4959063-C	0.79261	1E-9		0.0312676	[0.021-0.041] unit decrease	NR [11722792] (imputed)	N
605	chr6_qbl_hap6	2625204	2625205	rs4959063	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium VLDL	115,082 European ancestry individuals	NA	6p21.33		rs4959063-C	0.79261	2E-9		0.0304401	[0.021-0.04] unit decrease	NR [11722792] (imputed)	N
605	chr6_qbl_hap6	2625204	2625205	rs4959063	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in VLDL	115,082 European ancestry individuals	NA	6p21.33		rs4959063-C	0.79261	7E-11		0.0332965	[0.023-0.043] unit decrease	NR [11722792] (imputed)	N
605	chr6_qbl_hap6	2625204	2625205	rs4959063	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	6p21.33		rs4959063-C	0.79261	1E-8		0.0281437	[0.018-0.038] unit decrease	NR [11722792] (imputed)	N
605	chr6_qbl_hap6	2625204	2625205	rs4959063	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	6p21.33		rs4959063-C	0.79261	2E-10		0.0323143	[0.022-0.042] unit decrease	NR [11722792] (imputed)	N
605	chr6_qbl_hap6	2625204	2625205	rs4959063	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein B levels	115,082 European ancestry individuals	NA	6p21.33		rs4959063-C	0.79261	1E-9		0.0311161	[0.021-0.041] unit decrease	NR [11722792] (imputed)	N
605	chr6_qbl_hap6	2625335	2625336	rs2523554	33649182	Penova M	2021-03-01	Proc Natl Acad Sci U S A	Genome wide association study of HTLV-1-associated myelopathy/tropical spastic paraparesis in the Japanese population.	HTLV-1 associated myelopathy	731 Japanese ancestry cases, 846 Japanese ancestry controls	NA	6p21.33		rs2523554-C	0.11	3E-8		1.83	[1.48-2.27]	Illumina [126394]	N
605	chr6_qbl_hap6	2625458	2625459	rs2523552	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	6p21.33	DHFRP2	rs2523552-T	0.2263	1E-75		0.07846555	[0.07-0.087] unit decrease	Affymetrix [~ 2500000] (imputed)	N
605	chr6_qbl_hap6	2625481	2625482	rs2844583	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	High density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	6p21.33	HLA-B, MICA	rs2844583-?		9E-10		0.0428	[0.029-0.057] unit increase	Illumina [31500000] (imputed)	N
605	chr6_qbl_hap6	2626029	2626030	rs2844582	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	DHFRP2	rs2844582-T	NR	2E-10		0.022422	[0.016-0.029] unit increase	Affymetrix [321169] (imputed)	N
605	chr6_qbl_hap6	2626030	2626031	rs2523548	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6p21.33	DHFRP2	rs2523548-A	0.433296	1E-28		0.029001132	[0.024-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
605	chr6_qbl_hap6	2626242	2626243	rs9266359	25249183	Lu X	2014-09-23	Hum Mol Genet	Genome-wide association study in Chinese identifies novel loci for blood pressure and hypertension.	Systolic blood pressure	11,816 Han Chinese ancestry individuals	69,146 Han Chinese ancestry individuals	6p21.33	HLA-B	rs9266359-C	0.6	7E-6		0.44	[0.24-0.64] unit increase	Affymetrix, Illumina [2485448] (imputed)	N
605	chr6_qbl_hap6	2626242	2626243	rs9266359	25249183	Lu X	2014-09-23	Hum Mol Genet	Genome-wide association study in Chinese identifies novel loci for blood pressure and hypertension.	Diastolic blood pressure	11,816 Han Chinese ancestry individuals	69,146 Han Chinese ancestry individuals	6p21.33	HLA-B	rs9266359-C	0.6	2E-7		0.29	[0.17-0.41] unit increase	Affymetrix, Illumina [2485448] (imputed)	N
605	chr6_qbl_hap6	2626422	2626423	rs9266361	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (salicylic acid and derivatives)	41,461 East Asian ancestry cases, 137,265 East Asian ancestry controls	NA	6p21.33		rs9266361-T	0.812543574	5E-17		0.09066886	[0.07-0.112] unit decrease	Illumina [13429980] (imputed)	N
605	chr6_qbl_hap6	2626422	2626423	rs9266361	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	6p21.33		rs9266361-T	0.812543574	4E-14		0.07905273	[0.059-0.1] unit decrease	Illumina [13134967] (imputed)	N
605	chr6_qbl_hap6	2626422	2626423	rs9266361	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antithrombotic agents)	54,220 East Asian ancestry cases, 124,506 East Asian ancestry controls	NA	6p21.33		rs9266361-T	0.812543574	2E-16		0.08336314	[0.064-0.103] unit decrease	Illumina [13429980] (imputed)	N
605	chr6_qbl_hap6	2626422	2626423	rs9266361	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	DHFRP2	rs9266361-T	NR	1E-16		0.026028	[0.02-0.032] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_qbl_hap6	2626422	2626423	rs9266361	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.33		rs9266361-T	0.37995999999999996	5E-8		1.0236442	[1.01-1.03]	Affymetrix, Illumina [9851866] (imputed)	N
605	chr6_qbl_hap6	2626423	2626424	rs2523546	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Squamous cell lung carcinoma	8,350 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	6p21.33	NR	rs2523546-A	NR	9E-8		1.24	[1.14-1.34]	NR [NR] (imputed)	N
605	chr6_qbl_hap6	2626598	2626599	rs2428490	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	DHFRP2	rs2428490-A	NR	5E-10		0.0232656	[0.016-0.031] unit decrease	Affymetrix [127266] (imputed)	N
605	chr6_qbl_hap6	2626606	2626607	rs140949683	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GZMB	5,361 Icelandic ancestry individuals	NA	6p21.33		rs140949683-G	0.1074	3E-33		0.361549	[0.3-0.42] unit increase	Illumina [7506463] (imputed)	N
605	chr6_qbl_hap6	2626950	2626951	rs62395421	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	6p21.33	RNU6-283P	rs62395421-A	0.0803	2E-15		0.05211951	[0.039-0.065] unit decrease	Affymetrix [~ 2500000] (imputed)	N
605	chr6_qbl_hap6	2627469	2627470	rs2844578	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	DHFRP2	rs2844578-C	NR	3E-11		0.0246412	[0.017-0.032] unit decrease	Affymetrix [323858] (imputed)	N
605	chr6_qbl_hap6	2628371	2628372	rs6457402	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	DHFRP2	rs6457402-T	NR	1E-11		0.0242388	[0.017-0.031] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_qbl_hap6	2628452	2628453	rs2844575	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2844575-T	0.536322	3E-9		0.0243122	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
605	chr6_qbl_hap6	2628452	2628453	rs2844575	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	6p21.33		rs2844575-T	0.536	2E-12				Affymetrix [10369434] (imputed)	N
605	chr6_qbl_hap6	2628452	2628453	rs2844575	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs2844575-T	0.536	4E-31				Affymetrix [10369434] (imputed)	N
605	chr6_qbl_hap6	2628452	2628453	rs2844575	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.33		rs2844575-T	0.536	2E-53				Affymetrix [10369434] (imputed)	N
605	chr6_qbl_hap6	2628452	2628453	rs2844575	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	DHFRP2	rs2844575-C	NR	1E-11		0.0207917	[0.015-0.027] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_qbl_hap6	2628843	2628844	rs17193122	26151496	Chen PL	2015-07-07	Nat Commun	Genetic determinants of antithyroid drug-induced agranulocytosis by human leukocyte antigen genotyping and genome-wide association study.	Thionamide-induced agranulocytosis in Graves' disease	21 East Asian ancestry cases with agranulocytosis, 662 East Asian ancestry cases without agranulocytosis	21 East Asian ancestry cases with agranulocytosis, 546 East Asian ancestry cases without agranulocytosis	6p21.33	HLA-B*38:02	rs17193122-A	0.047	4E-27	(trend)	9.59	[5.78-15.90] (allelic)	Affymetrix [522980]	N
605	chr6_qbl_hap6	2629299	2629300	rs57989216	31219150	Ekenberg C	2019-06-13	J Infect Dis	Single nucleotide polymorphisms in HLA alleles are associated with HIV-1 viral load in demographically diverse, ART-naive participants from the START trial.	Pre-treatment viral load in HIV-1 infection	1,398 European ancestry individuals, 572 Black individuals, 418 Hispanic individuals, 13 Asian ancestry individuals, 39 individuals	NA	6p21.33	HLA-B, MIR6891	rs57989216-A	0.053	7E-13		0.4	[0.28-0.52] unit decrease	Affymetrix [339439]	N
605	chr6_qbl_hap6	2629409	2629410	rs2922994	25569183	Vijai J	2015-01-08	Nat Commun	A genome-wide association study of marginal zone lymphoma shows association to the HLA region.	Marginal zone lymphoma	825 European ancestry cases, 6,221 European ancestry controls	456 European ancestry cases, 906 European ancestry controls	6p21.33	HLA-B, TCF19	rs2922994-G	0.113	2E-9		1.64	[1.39-1.92]	Illumina [611856]	N
605	chr6_qbl_hap6	2629506	2629507	rs146683910	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Iritis	2,616 European ancestry cases, 478,126 European ancestry controls, 110 East Asian ancestry cases, 175,543 East Asian ancestry controls	NA	6p21.33		rs146683910-T	NR	5E-191		1.8349	[1.71-1.96] unit increase	Affymetrix, Illumina [25844196] (imputed)	N
605	chr6_qbl_hap6	2629609	2629610	rs7743761	20062062	Reveille JD	2010-01-10	Nat Genet	Genome-wide association study of ankylosing spondylitis identifies non-MHC susceptibility loci.	Ankylosing spondylitis	2,053 European ancestry cases, 5,140 European ancestry controls	898 European ancestry cases, 1,518 European ancestry controls	6p21.33	MHC	rs7743761-?	NR	5E-304				Illumina [288662]	N
605	chr6_qbl_hap6	2629927	2629928	rs9266406	23001997	Hou S	2012-12-06	Arthritis Rheum	Identification of a susceptibility locus in STAT4 for Behcet's disease in Han Chinese in a genome-wide association study.	Behcet's disease	147 Han Chinese ancestry cases, 951 Han Chinese ancestry controls	554 Han Chinese ancestry cases, 1,159 Han Chinese ancestry controls	6p21.33	MICA, DHFRP2, MICB	rs9266406-?	.40	2E-10		2.29	[1.77-2.95]	Affymetrix [661736]	N
605	chr6_qbl_hap6	2630657	2630658	rs2853989	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of granulocytes	170,223 European ancestry individuals	NA	6p21.33	DHFRP2, RNU6-283P	rs2853989-G	0.3405	3E-10		0.02321877	[0.016-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
605	chr6_qbl_hap6	2630718	2630719	rs2922996	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TEK	5,362 Icelandic ancestry individuals	NA	6p21.33		rs2922996-C	0.4661	1E-15		0.150071	[0.11-0.19] unit decrease	Illumina [7506463] (imputed)	N
605	chr6_qbl_hap6	2630718	2630719	rs2922996	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Angiopoietin-1 receptor levels	21,758 European ancestry individuals	9,173 individuals	6p21.33		rs2922996-C	0.46	2E-101		0.1892	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
605	chr6_qbl_hap6	2630722	2630723	rs9266428	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	6p21.33	DHFRP2, RNU6-283P	rs9266428-A	0.1804	9E-36		0.05778517	[0.049-0.067] unit increase	Affymetrix [~ 2500000] (imputed)	N
605	chr6_qbl_hap6	2630722	2630723	rs9266428	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	6p21.33	DHFRP2, RNU6-283P	rs9266428-A	0.1804	3E-36		0.05807499	[0.049-0.067] unit increase	Affymetrix [~ 2500000] (imputed)	N
605	chr6_qbl_hap6	2631604	2631605	rs9266444	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	142,940 East Asian ancestry individuals	NA	6p21.33	NR	rs9266444-A	0.237855	2E-10		0.029197	[0.02-0.038] SD units increase	Affymetrix, Illumina [16289021] (imputed)	N
605	chr6_qbl_hap6	2631857	2631858	rs9501574	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	RNU6-283P	rs9501574-C	NR	1E-8		0.023019	[0.015-0.031] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_qbl_hap6	2632357	2632358	rs2853986	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	RNU6-283P	rs2853986-C	NR	8E-20		0.0399121	[0.031-0.048] unit decrease	Affymetrix [323858] (imputed)	N
605	chr6_qbl_hap6	2632357	2632358	rs2853986	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	RNU6-283P	rs2853986-C	NR	7E-18		0.037756	[0.029-0.046] unit decrease	Affymetrix [127266] (imputed)	N
605	chr6_qbl_hap6	2633594	2633595	rs2844559	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	AL671883.1	rs2844559-T	NR	2E-16		0.0350697	[0.027-0.043] unit increase	Affymetrix [323123] (imputed)	N
605	chr6_qbl_hap6	2633677	2633678	rs9266490	24326010	Xavier JM	2013-12-10	Ann Rheum Dis	FUT2: filling the gap between genes and environment in Behcet's disease?	Behcet's disease	292 Iranian ancestry cases, 294 Iranian ancestry controls	684 Iranian ancestry cases, 532 Iranian ancestry controls, 1,215 Turkish ancestry cases, 1,278 Turkish ancestry controls	6p21.33	HLA-B	rs9266490-G	0.279	2E-44	(Greater Middle Eastern)	2.73	[2.35-3.17]	Affymetrix [868254]	N
605	chr6_qbl_hap6	2634428	2634429	rs2263321	30566020	Fukaya E	2018-12-01	Circulation	Clinical and Genetic Determinants of Varicose Veins.	Varicose veins	9,577 British ancestry cases, 327,959 British ancestry controls	NA	6p21.33	NR	rs2263321-A	0.33	8E-9		0.091	[0.06-0.122] unit decrease	Affymetrix [10972371] (imputed)	N
605	chr6_qbl_hap6	2635013	2635014	rs9266520	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	AL671883.1	rs9266520-C	NR	6E-10		0.0193551	[0.013-0.025] unit increase	Affymetrix [323858] (imputed)	N
605	chr6_qbl_hap6	2635013	2635014	rs9266520	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	AL671883.1	rs9266520-C	NR	1E-8		0.0177737	[0.012-0.024] unit increase	Affymetrix [127266] (imputed)	N
605	chr6_qbl_hap6	2635175	2635176	rs9501380	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	AL671883.1	rs9501380-A	NR	4E-8		0.0310676	[0.02-0.042] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_qbl_hap6	2635290	2635291	rs2523517	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	6p21.33	FGFR3P1	rs2523517-A	0.3597	3E-17		0.0314362	[0.024-0.039] unit increase	Affymetrix [~ 2500000] (imputed)	N
605	chr6_qbl_hap6	2635406	2635407	rs2523515	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	6p21.33	FGFR3P1	rs2523515-A	0.3451	6E-13		0.02824211	[0.021-0.036] unit decrease	Affymetrix [~ 2500000] (imputed)	N
605	chr6_qbl_hap6	2635674	2635675	rs9501583	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.33		rs9501583-C	0.811	3E-18				Affymetrix [10369434] (imputed)	N
605	chr6_qbl_hap6	2635697	2635698	rs5013221	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.33		rs5013221-C	0.371	1E-26				Affymetrix [10369434] (imputed)	N
605	chr6_qbl_hap6	2636003	2636004	rs2523644	30226566	Yamada Y	2018-09-04	Int J Mol Med	Identification of 13 novel susceptibility loci for early-onset myocardial infarction, hypertension, or chronic kidney disease.	Myocardial infarction	1,152 Japanese ancestry cases, 5,774 Japanese ancestry controls	NA	6p21.33	Intergenic	rs2523644-G		5E-7		1.49		Illumina [31245]	N
605	chr6_qbl_hap6	2636300	2636301	rs2844551	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	AL671883.1	rs2844551-G	NR	2E-9		0.0207536	[0.014-0.028] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_qbl_hap6	2638424	2638425	rs116488202	25200001	Robinson PC	2014-09-08	Arthritis Rheumatol	Genetic dissection of acute anterior uveitis reveals similarities and differences in associations observed with ankylosing spondylitis.	Acute anterior uveitis (with or without ankylosing spondylitis)	238 European ancestry primary acute anterior uveitis cases, 1,199 European ancestry cases with acute anterior uveitis and ankylosing spondylitis, 9,564 European ancestry controls	NR	6p21.33	HLA-B	rs116488202-?	NR	1E-300		16.8	[15.0-18.7]	Illumina [at least 106525] (imputed)	N
605	chr6_qbl_hap6	2638424	2638425	rs116488202	23749187	Cortes A	2013-07-01	Nat Genet	Identification of multiple risk variants for ankylosing spondylitis through high-density genotyping of immune-related loci.	Ankylosing spondylitis	9,069 European ancestry cases, 1,550 East Asian ancestry cases, 13,578 European ancestry controls, 1,567 East Asian ancestry controls	NA	6p21.33	HLA-B*27	rs116488202-?	NR	1E-100	(EA)	46.0		Illumina [128935]	N
605	chr6_qbl_hap6	2639373	2639374	rs9266613	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.33		rs9266613-T	0.805	8E-22				Affymetrix [10369434] (imputed)	N
605	chr6_qbl_hap6	2639674	2639675	rs9266618	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	FGFR3P1	rs9266618-C	NR	4E-9		0.0286873	[0.019-0.038] unit decrease	Affymetrix [319769] (imputed)	N
605	chr6_qbl_hap6	2639674	2639675	rs9266618	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	FGFR3P1	rs9266618-C	NR	6E-9		0.0284984	[0.019-0.038] unit decrease	Affymetrix [319769] (imputed)	N
605	chr6_qbl_hap6	2639674	2639675	rs9266618	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	FGFR3P1	rs9266618-C	NR	2E-8		0.0280195	[0.018-0.038] unit decrease	Affymetrix [321169] (imputed)	N
605	chr6_qbl_hap6	2639953	2639954	rs2523627	31375628	Tengvall K	2019-08-02	Proc Natl Acad Sci U S A	Molecular mimicry between Anoctamin 2 and Epstein-Barr virus nuclear antigen 1 associates with multiple sclerosis risk.	Anti-anoctamin 2 antibody levels	11,936 European ancestry individuals	NA	6p21.33	NR	rs2523627-C	NR	9E-6		0.05	[0.026-0.074] unit increase	Illumina [615763]	N
605	chr6_qbl_hap6	2640065	2640066	rs4959072	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	FGFR3P1	rs4959072-C	NR	9E-10		0.0233595	[0.016-0.031] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_qbl_hap6	2640110	2640111	rs6909636	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	FGFR3P1	rs6909636-A	NR	1E-8		0.018048	[0.012-0.024] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_qbl_hap6	2640132	2640133	rs2442736	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	FGFR3P1	rs2442736-C	NR	2E-9		0.0200243	[0.014-0.027] unit decrease	Affymetrix [319769] (imputed)	N
605	chr6_qbl_hap6	2640132	2640133	rs2442736	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	FGFR3P1	rs2442736-C	NR	1E-10		0.0237826	[0.017-0.031] unit decrease	Affymetrix [323858] (imputed)	N
605	chr6_qbl_hap6	2640132	2640133	rs2442736	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	FGFR3P1	rs2442736-C	NR	5E-9		0.0194468	[0.013-0.026] unit decrease	Affymetrix [319769] (imputed)	N
605	chr6_qbl_hap6	2640132	2640133	rs2442736	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	FGFR3P1	rs2442736-C	NR	8E-10		0.022647	[0.015-0.03] unit decrease	Affymetrix [127266] (imputed)	N
605	chr6_qbl_hap6	2640164	2640165	rs2442735	27668658	Iotchkova V	2016-11-01	Nat Genet	Discovery and refinement of genetic loci associated with cardiometabolic risk using dense imputation maps.	Cardiometabolic and hematological traits	up to 35,981 European ancestry individuals	up to 102,505 European ancestry individuals	6p21.33	HLA-B	rs2442735-G		2E-46	(WBC)	0.01	[0.008-0.012] unit decrease	Affymetrix, Illumina [17000000] (imputed)	N
605	chr6_qbl_hap6	2640333	2640334	rs9266629	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	6p21.33	NR	rs9266629-?	NR	4E-9				Affymetrix [~ 8270000] (imputed)	N
605	chr6_qbl_hap6	2640333	2640334	rs9266629	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	6p21.33	NR	rs9266629-?		5E-11	(SFTPD)	0.2699	[NR] unit increase	Illumina [NR]	N
605	chr6_qbl_hap6	2640333	2640334	rs9266629	23144326	Kim DK	2012-11-09	Am J Respir Crit Care Med	Genome-wide association analysis of blood biomarkers in chronic obstructive pulmonary disease.	Chronic obstructive pulmonary disease-related biomarkers	Up to 1,951 European ancestry smokers	NA	6p21.33	FGFR3P	rs9266629-C	0.21	4E-10	(SP-D)			Illumina [588352]	N
605	chr6_qbl_hap6	2640489	2640490	rs9266634	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	FGFR3P1	rs9266634-A	NR	2E-15		0.0224814	[0.017-0.028] unit decrease	Affymetrix [319769] (imputed)	N
605	chr6_qbl_hap6	2640489	2640490	rs9266634	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	FGFR3P1	rs9266634-A	NR	2E-8		0.0175518	[0.011-0.024] unit decrease	Affymetrix [323858] (imputed)	N
605	chr6_qbl_hap6	2640489	2640490	rs9266634	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	FGFR3P1	rs9266634-A	NR	3E-14		0.0215569	[0.016-0.027] unit decrease	Affymetrix [319769] (imputed)	N
605	chr6_qbl_hap6	2640489	2640490	rs9266634	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	FGFR3P1	rs9266634-A	NR	2E-14		0.0219479	[0.016-0.028] unit decrease	Affymetrix [321169] (imputed)	N
605	chr6_qbl_hap6	2640489	2640490	rs9266634	28762467	Wadelius M	2017-08-01	Clin Pharmacol Ther	Sulfasalazine-Induced Agranulocytosis Is Associated With the Human Leukocyte Antigen Locus.	Sulfasalazine-induced agranulocytosis	36 European ancestry cases, 5,170 European ancestry untreated controls	NA	6p21.33	intergenic	rs9266634-?	NR	3E-8		5.37	[2.97-9.69]	Illumina [9380034] (imputed)	N
605	chr6_qbl_hap6	2640489	2640490	rs9266634	28762467	Wadelius M	2017-08-01	Clin Pharmacol Ther	Sulfasalazine-Induced Agranulocytosis Is Associated With the Human Leukocyte Antigen Locus.	Sulfasalazine-induced agranulocytosis	36 European ancestry cases, 5,170 European ancestry untreated controls	NA	6p21.33	HLA-B	rs9266634-?	NR	3E-8		5.37	[2.97-9.69]	Illumina [9380034] (imputed)	N
605	chr6_qbl_hap6	2640580	2640581	rs9266639	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DDR1	5,364 Icelandic ancestry individuals	NA	6p21.33		rs9266639-T	0.2296	1E-7		0.113803	[0.072-0.156] unit increase	Illumina [7506463] (imputed)	N
605	chr6_qbl_hap6	2640715	2640716	rs2844543	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	ZDHHC20P2	rs2844543-T	NR	3E-12		0.0196225	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_qbl_hap6	2640715	2640716	rs2844543	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	ZDHHC20P2	rs2844543-T	NR	4E-11		0.0185963	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_qbl_hap6	2640715	2640716	rs2844543	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	ZDHHC20P2	rs2844543-T	NR	4E-11		0.0186102	[0.013-0.024] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_qbl_hap6	2640715	2640716	rs2844543	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	ZDHHC20P2	rs2844543-T	NR	2E-16		0.0252366	[0.019-0.031] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_qbl_hap6	2640737	2640738	rs79815527	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28+ CD45RA+ CD8dim T cell %T cell	3,440 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs79815527-A	0.12032	3E-9		0.2753	[0.18-0.37] unit increase	Illumina [18357815] (imputed)	N
605	chr6_qbl_hap6	2640785	2640786	rs2844542	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	71,221 East Asian ancestry individuals	NA	6p21.33		rs2844542-G	0.354053	4E-8		0.024232	[0.016-0.033] unit increase	Illumina [13466143] (imputed)	N
605	chr6_qbl_hap6	2640961	2640962	rs2244020	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	ZDHHC20P2	rs2244020-G	NR	4E-13		0.0234399	[0.017-0.03] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_qbl_hap6	2640961	2640962	rs2244020	25102180	Ng MC	2014-08-07	PLoS Genet	Meta-analysis of genome-wide association studies in African Americans provides insights into the genetic architecture of type 2 diabetes.	Type 2 diabetes	8,284 African American cases, 15,543 African American controls	6,061 African American cases, 5,483 African American controls, 8,130 European ancestry cases, 38,987 European ancestry controls	6p21.33	HLA-B	rs2244020-G	0.69	7E-9		1.09	[1.06-1.13]	Affymetrix, Illumina [2579389] (imputed)	N
605	chr6_qbl_hap6	2640961	2640962	rs2244020	25102180	Ng MC	2014-08-07	PLoS Genet	Meta-analysis of genome-wide association studies in African Americans provides insights into the genetic architecture of type 2 diabetes.	Type 2 diabetes	8,284 African American cases, 15,543 African American controls	6,061 African American cases, 5,483 African American controls, 8,130 European ancestry cases, 38,987 European ancestry controls	6p21.33	HLA-B	rs2244020-G	0.69	1E-6	(AA)	1.11	[1.07-1.16]	Affymetrix, Illumina [2579389] (imputed)	N
605	chr6_qbl_hap6	2641308	2641309	rs4713460	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.33		rs4713460-G	0.739	7E-16				Affymetrix [10369434] (imputed)	N
605	chr6_qbl_hap6	2641308	2641309	rs4713460	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	ZDHHC20P2	rs4713460-A	NR	2E-8		0.019914	[0.013-0.027] unit increase	Affymetrix [323858] (imputed)	N
605	chr6_qbl_hap6	2641326	2641327	rs4713462	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	ZDHHC20P2	rs4713462-A	NR	3E-9		0.0207985	[0.014-0.028] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_qbl_hap6	2641326	2641327	rs4713462	32534018	Liu X	2020-06-10	Brain Behav Immun	Genetic factors underlying the bidirectional relationship between autoimmune and mental disorders - findings from a Danish population-based study.	Autoimmune traits	1,383 Danish ancestry cases, 62,656 Danish ancestry controls	NA	6p21.33	NR	rs4713462-A	0.29	2E-13		1.37	[1.26-1.49]	NR [7721839] (imputed)	N
605	chr6_qbl_hap6	2641550	2641551	rs2596570	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Tyrosine levels	114,913 European ancestry individuals	NA	6p21.33		rs2596570-T	0.834751	5E-9		0.0325088	[0.022-0.043] unit decrease	NR [11722792] (imputed)	N
605	chr6_qbl_hap6	2641875	2641876	rs4143332	23603763	Liu JZ	2013-06-01	Nat Genet	Dense genotyping of immune-related disease regions identifies nine new risk loci for primary sclerosing cholangitis.	Primary sclerosing cholangitis	3,789 European ancestry cases, 25,079 European ancestry controls	NA	6p21.33	HLA-B	rs4143332-?	NR	1E-250				Illumina [140322] (imputed)	N
605	chr6_qbl_hap6	2641887	2641888	rs9266677	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	ZDHHC20P2	rs9266677-A	NR	2E-8		0.0194816	[0.013-0.026] unit increase	Affymetrix [323123] (imputed)	N
605	chr6_qbl_hap6	2642027	2642028	rs4143333	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	6p21.33	MICA	rs4143333-G	0.12	2E-16	(conditional on rs2284174)	1.15	[NR]	Affymetrix, Illumina [6224355] (imputed)	N
605	chr6_qbl_hap6	2642027	2642028	rs4143333	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	6p21.33	HLA-C, MICA	rs4143333-G	NR	1E-9		0.186384	[0.13-0.25] unit decrease	Illumina [at least 950000] (imputed)	N
605	chr6_qbl_hap6	2643316	2643317	rs9266721	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.33		rs9266721-C	0.408	8E-27				Affymetrix [10369434] (imputed)	N
605	chr6_qbl_hap6	2643341	2643342	rs9295987	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CREB3L4	5,364 Icelandic ancestry individuals	NA	6p21.33		rs9295987-G	0.04402	4E-158		1.13632	[1.05-1.22] unit increase	Illumina [7506463] (imputed)	N
605	chr6_qbl_hap6	2643341	2643342	rs9295987	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	FGFR3P1	rs9295987-G	0.061	3E-69	(Cyclic AMP-responsive element-binding protein 3-like protein 4, CREB3L4.11308.8.3)	0.87	[0.77-0.97] unit increase	Affymetrix [10572788] (imputed)	N
605	chr6_qbl_hap6	2643800	2643801	rs2844535	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-S	rs2844535-G	NR	1E-11		0.023805	[0.017-0.031] unit decrease	Affymetrix [323858] (imputed)	N
605	chr6_qbl_hap6	2643800	2643801	rs2844535	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HLA-S	rs2844535-G	NR	3E-11		0.0233241	[0.016-0.03] unit decrease	Affymetrix [127266] (imputed)	N
605	chr6_qbl_hap6	2644202	2644203	rs1521	31050781	Zhao SX	2019-05-03	JAMA Netw Open	Assessment of Molecular Subtypes in Thyrotoxic Periodic Paralysis and Graves Disease Among Chinese Han Adults: A Population-Based Genome-Wide Association Study.	Thyrotoxic hypokalemic periodic paralysis and Graves disease	171 Han Chinese ancestry cases, 2,160 Han Chinese ancestry controls	362 Han Chinese ancestry cases, 1,089 Han Chinese ancestry controls	6p21.33	MICA/HLA-B	rs1521-?	0.81	4E-18		2.51	[2.02-3.13]	Illumina [2752055] (imputed)	N
605	chr6_qbl_hap6	2644202	2644203	rs1521	21841780	Chu X	2011-08-14	Nat Genet	A genome-wide association study identifies two new risk loci for Graves' disease.	Graves' disease	1,468 Chinese ancestry cases, 1,490 Chinese ancestry controls	3,994 Chinese ancestry cases, 3,510 Chinese ancestry controls	6p21.33	HLA-B	rs1521-T	0.79	2E-65		1.92	[1.78-2.08]	Illumina [486049]	N
605	chr6_qbl_hap6	2644552	2644553	rs17193507	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	683 Turkish ancestry cases, 1,721 Turkish ancestry controls	NA	6p21.33	HLA-B, MICA	rs17193507-?	NR	2E-18	(conditional on rs2844678, rs9262437 and rs61444472)			Illumina [4495750] (imputed)	N
605	chr6_qbl_hap6	2644552	2644553	rs17193507	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	286 European ancestry cases, 2,652 European ancestry controls, 76 Han Chinese ancestry cases, 889 Han Chinese ancestry controls, 46 South Asian ancestry cases, 501 South Asian ancestry controls, 683 Turkish ancestry cases, 1,721 Turkish ancestry controls	NA	6p21.33	HLA-B, MICA	rs17193507-?	NR	7E-30	(conditional on rs2844678 and rs12524487)	3.28	NR	Illumina [up to 4495750] (imputed)	N
605	chr6_qbl_hap6	2644710	2644711	rs9266745	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p21.33	HLA-B, MICA	rs9266745-G	0.17	2E-8	(Turkish)	1.87	[1.50-2.34]	Illumina [up to 547389]	N
605	chr6_qbl_hap6	2645020	2645021	rs3020582	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-S	rs3020582-A	NR	3E-32		0.0377962	[0.032-0.044] unit increase	Affymetrix [323123] (imputed)	N
605	chr6_qbl_hap6	2645028	2645029	rs2905715	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-S	rs2905715-C	NR	1E-12		0.0208764	[0.015-0.027] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_qbl_hap6	2645028	2645029	rs2905715	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-S	rs2905715-C	NR	1E-10		0.0211485	[0.015-0.028] unit increase	Affymetrix [323858] (imputed)	N
605	chr6_qbl_hap6	2645028	2645029	rs2905715	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-S	rs2905715-C	NR	1E-12		0.020881	[0.015-0.027] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_qbl_hap6	2645028	2645029	rs2905715	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HLA-S	rs2905715-C	NR	3E-10		0.0206892	[0.014-0.027] unit increase	Affymetrix [127266] (imputed)	N
605	chr6_qbl_hap6	2645028	2645029	rs2905715	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.33	HLA-S	rs2905715-C	NR	9E-10		0.0181976	[0.012-0.024] unit increase	Affymetrix [321114] (imputed)	N
605	chr6_qbl_hap6	2645028	2645029	rs2905715	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-S	rs2905715-C	NR	3E-8		0.0177635	[0.011-0.024] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_qbl_hap6	2645028	2645029	rs2905715	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HLA-S	rs2905715-C	NR	3E-13		0.0217768	[0.016-0.028] unit increase	Affymetrix [321169] (imputed)	N
605	chr6_qbl_hap6	2645047	2645048	rs3020581	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-S	rs3020581-G	NR	2E-14		0.0240767	[0.018-0.03] unit decrease	Affymetrix [323858] (imputed)	N
605	chr6_qbl_hap6	2645047	2645048	rs3020581	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HLA-S	rs3020581-G	NR	1E-12		0.0224897	[0.016-0.029] unit decrease	Affymetrix [127266] (imputed)	N
605	chr6_qbl_hap6	2645047	2645048	rs3020581	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HLA-S	rs3020581-G	NR	6E-18		0.0248167	[0.019-0.03] unit decrease	Affymetrix [321169] (imputed)	N
605	chr6_qbl_hap6	2645092	2645093	rs9266762	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-S	rs9266762-T	NR	2E-8		0.019515	[0.013-0.026] unit decrease	Affymetrix [319769] (imputed)	N
605	chr6_qbl_hap6	2645092	2645093	rs9266762	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-S	rs9266762-T	NR	4E-8		0.0191651	[0.012-0.026] unit increase	Affymetrix [321016] (imputed)	N
605	chr6_qbl_hap6	2645162	2645163	rs2507978	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	6p21.33	HLA-B, MICA	rs2507978-G	0.41	1E-10		1.035	[1.02-1.05]	Affymetrix, Illumina [8307659] (imputed)	N
605	chr6_qbl_hap6	2645173	2645174	rs9266766	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)(bidirectional)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.33		rs9266766-G	NR	2E-9				Affymetrix [7846216] (imputed)	N
605	chr6_qbl_hap6	2645538	2645539	rs2442749	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	6p21.33	HLA-S	rs2442749-C	0.292193	6E-13		0.018536638	[0.013-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
605	chr6_qbl_hap6	2645558	2645559	rs6920323	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.33	NR	rs6920323-T	NR	4E-6		0.022	unit decrease	Affymetrix [at least 7091467] (imputed)	N
605	chr6_qbl_hap6	2645558	2645559	rs6920323	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.33	NR	rs6920323-T	NR	2E-13		0.038	unit decrease	Affymetrix [at least 7091467] (imputed)	N
605	chr6_qbl_hap6	2645558	2645559	rs6920323	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.33	NR	rs6920323-T	0.812	3E-14	(EA)	0.044	unit decrease	Affymetrix [at least 7091467] (imputed)	N
605	chr6_qbl_hap6	2645558	2645559	rs6920323	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.33	NR	rs6920323-T	NR	2E-11		0.036	unit decrease	Affymetrix [at least 7091467] (imputed)	N
605	chr6_qbl_hap6	2645558	2645559	rs6920323	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.33	NR	rs6920323-T	0.812	4E-12	(EA)	0.042	unit decrease	Affymetrix [at least 7091467] (imputed)	N
605	chr6_qbl_hap6	2645611	2645612	rs9266772	23817569	Hinds DA	2013-06-30	Nat Genet	A genome-wide association meta-analysis of self-reported allergy identifies shared and allergy-specific susceptibility loci.	Self-reported allergy	53,862 European ancestry individuals	NA	6p21.33	MICA, HLA-C	rs9266772-C	0.1882	3E-12		0.104	[0.075-0.133] unit increase	Illumina [2400000] (imputed)	N
605	chr6_qbl_hap6	2645944	2645945	rs7775759	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-S	rs7775759-A	NR	1E-11		0.0216624	[0.015-0.028] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_qbl_hap6	2646129	2646130	rs7741091	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	6p21.33	RNU6-603P	rs7741091-?	NR	3E-26		0.0306	[0.026-0.036] unit increase	Affymetrix [5701386] (imputed)	N
605	chr6_qbl_hap6	2646129	2646130	rs7741091	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.33	HLA-S	rs7741091-A	0.6803	3E-7		0.0391	[0.024-0.054] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
605	chr6_qbl_hap6	2646129	2646130	rs7741091	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p21.33	MICA	rs7741091-A	0.6701	8E-8	(EA)	0.0202	[0.013-0.028] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
605	chr6_qbl_hap6	2646129	2646130	rs7741091	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p21.33	MICA	rs7741091-A	0.6701	2E-8	(EA,men)	0.0306	[0.02-0.041] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
605	chr6_qbl_hap6	2646192	2646193	rs56671953	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6p21.33	NR	rs56671953-?	NR	7E-9				Affymetrix [~ 8270000] (imputed)	N
605	chr6_qbl_hap6	2646671	2646672	rs2844531	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	315,284 European ancestry male individuals	NA	6p21.33	NR	rs2844531-A	0.8585	1E-30		0.0294	[0.024-0.034] unit increase	NR [~ 27400000] (imputed)	N
605	chr6_qbl_hap6	2646829	2646830	rs2596565	24532677	Bossini-Castillo L	2014-02-14	Ann Rheum Dis	A genome-wide association study of rheumatoid arthritis without antibodies against citrullinated peptides.	Rheumatoid arthritis (ACPA-negative)	1,148 European ancestry cases, 6,008 European ancestry controls	774 European ancestry cases, 1,079 European ancestry controls	6p21.33	MICA, HLA-B	rs2596565-?		9E-9		1.4	[NR]	Illumina [452367]	N
605	chr6_qbl_hap6	2647139	2647140	rs2523484	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-S	rs2523484-T	NR	9E-10		0.0200027	[0.014-0.026] unit increase	Affymetrix [323858] (imputed)	N
605	chr6_qbl_hap6	2647139	2647140	rs2523484	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HLA-S	rs2523484-T	NR	7E-9		0.01891	[0.013-0.025] unit increase	Affymetrix [127266] (imputed)	N
605	chr6_qbl_hap6	2647139	2647140	rs2523484	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-S	rs2523484-T	NR	3E-15		0.0253333	[0.019-0.032] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_qbl_hap6	2647139	2647140	rs2523484	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HLA-S	rs2523484-T	NR	3E-8		0.0164823	[0.011-0.022] unit increase	Affymetrix [321169] (imputed)	N
605	chr6_qbl_hap6	2647292	2647293	rs2523483	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.33	NR	rs2523483-T	0.939	3E-11	(conditional)	4.665	[4.53-4.8]	Illumina [11270530] (imputed)	N
605	chr6_qbl_hap6	2647682	2647683	rs6932730	23817571	Bonnelykke K	2013-06-30	Nat Genet	Meta-analysis of genome-wide association studies identifies ten loci influencing allergic sensitization.	Allergic sensitization	5,789 European ancestry cases, 10,056 European ancestry controls	6,114 European ancestry cases, 9,920 European ancestry controls	6p21.33	MICA, HLA-C, HLA-B, MICB	rs6932730-T	0.82	4E-8		1.14	[1.09-1.20]	Affymetrix, Illumina [~ 2500000] (imputed)	N
605	chr6_qbl_hap6	2647738	2647739	rs12524487	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	286 European ancestry cases, 2,652 European ancestry controls, 76 Han Chinese ancestry cases, 889 Han Chinese ancestry controls, 46 South Asian ancestry cases, 501 South Asian ancestry controls, 683 Turkish ancestry cases, 1,721 Turkish ancestry controls	NA	6p21.33	HLA-B, MICA	rs12524487-?	NR	6E-38	(conditional on rs2844678)	3.12	NR	Illumina [up to 4495750] (imputed)	N
605	chr6_qbl_hap6	2647738	2647739	rs12524487	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	229 European ancestry cases, 1,088 European ancestry controls	NA	6p21.33	HLA-B, MICA	rs12524487-?	NR	7E-20				Illumina [4388215] (imputed)	N
605	chr6_qbl_hap6	2647738	2647739	rs12524487	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p21.33	HLA-B, MICA	rs12524487-T	0.07	3E-15	(EA)	3.78	[2.66-5.36]	Illumina [up to 547389]	N
605	chr6_qbl_hap6	2647738	2647739	rs12524487	23830517	Saruhan-Direskeneli G	2013-07-03	Am J Hum Genet	Identification of multiple genetic susceptibility loci in Takayasu arteritis.	Takayasu arteritis	305 Turkish ancestry cases, 106 European ancestry cases, 483 Turkish ancestry controls, 553 European ancestry controls	NA		HLA-B, MICA	rs12524487-T	0.04	6E-16		3.29		Illumina [at least 124312]	N
605	chr6_qbl_hap6	2648060	2648061	rs13437082	28031287	Sasayama D	2016-11-26	Hum Mol Genet	Genome-wide quantitative trait loci mapping of the human cerebrospinal fluid proteome.	Cerebrospinal fluid biomarker levels	133 Japanese ancestry individuals.	NA	6p21.33	NR	rs13437082-?	NR	1E-10	(MHC class I polypeptide-related sequence A)			Illumina [514227]	N
605	chr6_qbl_hap6	2648060	2648061	rs13437082	19343178	Soranzo N	2009-04-03	PLoS Genet	Meta-analysis of genome-wide scans for human adult stature identifies novel Loci and associations with measures of skeletal frame size.	Height	12,611 European ancestry individuals	7,187 European ancestry individuals	6p21.33	HLA-B	rs13437082-?	0.13	5E-8		0.07	[0.04-0.10] s.d. decrease	Illumina [229216]	N
605	chr6_qbl_hap6	2648619	2648620	rs13437088	23143594	Tsoi LC	2012-12-01	Nat Genet	Identification of 15 new psoriasis susceptibility loci highlights the role of innate immunity.	Psoriasis	10,588 European ancestry cases, 22,806 European ancestry controls	NA	6p21.33	HLA-B, HLA-C, MICA	rs13437088-T	0.25	3E-40	(conditioned on rs4406273)	1.32		Illumina [111236] (imputed)	N
605	chr6_qbl_hap6	2650030	2650031	rs72657657	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG181B23.7	rs72657657-A	NR	4E-13		0.0276575	[0.02-0.035] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_qbl_hap6	2651352	2651353	rs3128983	33002439	Jin G	2020-10-01	Lancet Oncol	Genetic risk, incident gastric cancer, and healthy lifestyle: a meta-analysis of genome-wide association studies and prospective cohort study.	Gastric cancer	10,254 Han Chinese ancestry cases, 10,914 Han Chinese ancestry controls	NA	6p21.33	NR	rs3128983-T	0.62	4E-6		0.9	NR	Affymetrix, Illumina [6957974] (imputed)	N
605	chr6_qbl_hap6	2651704	2651705	rs189117034	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	6p21.33		rs189117034-G	0.012714	4E-6		0.14073	[0.081-0.2] unit decrease	Affymetrix [15580782] (imputed)	N
605	chr6_qbl_hap6	2652379	2652380	rs9266791	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG181B23.7	rs9266791-C	NR	9E-16		0.0226999	[0.017-0.028] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_qbl_hap6	2652379	2652380	rs9266791	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG181B23.7	rs9266791-C	NR	5E-10		0.0195742	[0.013-0.026] unit increase	Affymetrix [323858] (imputed)	N
605	chr6_qbl_hap6	2652379	2652380	rs9266791	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG181B23.7	rs9266791-C	NR	5E-15		0.0220951	[0.017-0.028] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_qbl_hap6	2652379	2652380	rs9266791	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	XXbac-BPG181B23.7	rs9266791-C	NR	7E-9		0.0181935	[0.012-0.024] unit increase	Affymetrix [127266] (imputed)	N
605	chr6_qbl_hap6	2652379	2652380	rs9266791	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG181B23.7	rs9266791-C	NR	4E-9		0.0165754	[0.011-0.022] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_qbl_hap6	2652379	2652380	rs9266791	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG181B23.7	rs9266791-C	NR	5E-14		0.0232092	[0.017-0.029] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_qbl_hap6	2652379	2652380	rs9266791	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG181B23.7	rs9266791-C	NR	7E-15		0.0222285	[0.017-0.028] unit increase	Affymetrix [321169] (imputed)	N
605	chr6_qbl_hap6	2652391	2652392	rs9348866	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG181B23.7	rs9348866-T	NR	5E-10		0.0179264	[0.012-0.024] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_qbl_hap6	2652391	2652392	rs9348866	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG181B23.7	rs9348866-T	NR	3E-9		0.0188961	[0.013-0.025] unit increase	Affymetrix [323858] (imputed)	N
605	chr6_qbl_hap6	2652391	2652392	rs9348866	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG181B23.7	rs9348866-T	NR	4E-9		0.0169345	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_qbl_hap6	2652391	2652392	rs9348866	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	XXbac-BPG181B23.7	rs9348866-T	NR	3E-8		0.0176499	[0.011-0.024] unit increase	Affymetrix [127266] (imputed)	N
605	chr6_qbl_hap6	2652391	2652392	rs9348866	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG181B23.7	rs9348866-T	NR	8E-11		0.0186692	[0.013-0.024] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_qbl_hap6	2652391	2652392	rs9348866	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG181B23.7	rs9348866-T	NR	3E-16		0.0256147	[0.019-0.032] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_qbl_hap6	2652391	2652392	rs9348866	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG181B23.7	rs9348866-T	NR	4E-9		0.0170756	[0.011-0.023] unit increase	Affymetrix [321169] (imputed)	N
605	chr6_qbl_hap6	2652597	2652602	rs71699779	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	6p21.33	XXbac-BPG181B23.7	rs71699779-C	0.069883	9E-37		0.057562444	[0.049-0.066] unit increase	Affymetrix [93095623] (imputed)	N
605	chr6_qbl_hap6	2653533	2653534	rs2596517	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG181B23.7	rs2596517-G	NR	7E-14		0.0296528	[0.022-0.037] unit increase	Affymetrix [323123] (imputed)	N
605	chr6_qbl_hap6	2653693	2653694	rs7751505	23449627	Cousminer DL	2013-02-27	Hum Mol Genet	Genome-wide association and longitudinal analyses reveal genetic loci linking pubertal height growth, pubertal timing and childhood adiposity.	Pubertal anthropometrics	up to 5,043 European ancestry males, up to 5,756 European ancestry females	NA	6p21.33	MICA, VARS2	rs7751505-C	0.28	4E-6	(Pubertal growth)	0.07	[0.041-0.099] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
605	chr6_qbl_hap6	2654040	2654041	rs116562707	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Naive CD8+ T cell %T cell	3,427 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs116562707-G	0.0186	3E-9		0.3952	[0.27-0.53] unit increase	Illumina [18349913] (imputed)	N
605	chr6_qbl_hap6	2654040	2654041	rs116562707	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28+ CD45RA+ CD8+ T cell %T cell	3,440 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs116562707-G	0.01868	4E-9		0.4024	[0.27-0.54] unit increase	Illumina [18357815] (imputed)	N
605	chr6_qbl_hap6	2654082	2654083	rs28359827	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.33	NR	rs28359827-A	0.077	2E-71	(conditional)	2.916	[2.8-3.03]	Illumina [11270530] (imputed)	N
605	chr6_qbl_hap6	2655426	2655427	rs35026345	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	CAG-81 sp000435795 abundance in stool	5,959 Finnish ancestry individuals	NA	6p21.33		rs35026345-T	0.318743	2E-8		0.100796	[0.065-0.136] unit decrease	Illumina [7980478] (imputed)	N
605	chr6_qbl_hap6	2655704	2655705	rs28366119	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Keratinocyte cancer (MTAG)	at least 18,538 European ancestry cases, at least 340,302 European ancestry controls	NA	6p21.33	ERG	rs28366119-T	0.939044	4E-11		1.14	[1.10-1.19]	Affymetrix [7600000] (imputed)	N
605	chr6_qbl_hap6	2655749	2655750	rs16899524	23417110	Tin A	2013-02-16	Hum Genet	Genome-wide association study identified the human leukocyte antigen region as a novel locus for plasma beta-2 microglobulin.	Beta-2 microglubulin plasma levels	6,728 European ancestry individuals		6p21.33	HLA-B	rs16899524-C	0.93	1E-8		0.04	[0.026-0.054] unit increase	Affymetrix [2500000] (imputed)	N
605	chr6_qbl_hap6	2656321	2656322	rs183809241	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pneumonia	16,887 European ancestry cases, 463,412 European ancestry controls, 7,423 East Asian ancestry cases, 171,303 East Asian ancestry controls	NA	6p21.33		rs183809241-C	NR	9E-16		0.7693	[0.58-0.96] unit increase	Affymetrix, Illumina [25843326] (imputed)	N
605	chr6_qbl_hap6	2656380	2656381	rs142973694	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	IgA levels	16,883 Icelandic ancestry individuals	2,151 Swedish ancestry individuals	6p21.33	MICA	rs142973694-A	0.0655	7E-10		0.13	NR SD units increase	Illumina [21568490] (imputed)	N
605	chr6_qbl_hap6	2656465	2656466	rs2523466	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.33		rs2523466-G	0.77	8E-68				Affymetrix [10369434] (imputed)	N
605	chr6_qbl_hap6	2657485	2657486	rs11757660	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG181B23.7	rs11757660-C	NR	9E-13		0.0223072	[0.016-0.028] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_qbl_hap6	2657526	2657527	rs28366133	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG181B23.7	rs28366133-T	NR	2E-10		0.0184393	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_qbl_hap6	2657526	2657527	rs28366133	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG181B23.7	rs28366133-T	NR	7E-10		0.0199985	[0.014-0.026] unit increase	Affymetrix [323858] (imputed)	N
605	chr6_qbl_hap6	2657526	2657527	rs28366133	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG181B23.7	rs28366133-T	NR	2E-9		0.0176126	[0.012-0.023] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_qbl_hap6	2657526	2657527	rs28366133	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	XXbac-BPG181B23.7	rs28366133-T	NR	6E-9		0.0188541	[0.012-0.025] unit increase	Affymetrix [127266] (imputed)	N
605	chr6_qbl_hap6	2657526	2657527	rs28366133	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG181B23.7	rs28366133-T	NR	6E-18		0.0274101	[0.021-0.034] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_qbl_hap6	2657526	2657527	rs28366133	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG181B23.7	rs28366133-T	NR	5E-10		0.0183385	[0.013-0.024] unit increase	Affymetrix [321169] (imputed)	N
605	chr6_qbl_hap6	2657526	2657527	rs28366133	28468790	Agopian AJ	2017-06-01	Circ Cardiovasc Genet	Genome-Wide Association Studies and Meta-Analyses for Congenital Heart Defects.	Conotruncal heart defects (maternal effects)	up to 838 European ancestry trios	NA	6p21.33	intergenic	rs28366133-?	NR	4E-6		1.226459	[1.124163-1.338064]	Illumina [at least 4756722] (imputed)	N
605	chr6_qbl_hap6	2658157	2658158	rs2251396	25936594	Tomer Y	2015-04-27	J Autoimmun	Genome wide identification of new genes and pathways in patients with both autoimmune thyroiditis and type 1 diabetes.	Type 1 diabetes and autoimmune thyroid diseases	346 European ancestry cases, 727 European ancestry controls	185 European ancestry cases, 340 European ancestry controls	6p21.33	PSORS1C1, MICA, HCP5	rs2251396-T	NR	1E-22		2.2132		Illumina [514008]	N
605	chr6_qbl_hap6	2658298	2658299	rs72502580	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG181B23.7	rs72502580-T	NR	9E-9		0.036638	[0.024-0.049] unit increase	Affymetrix [323858] (imputed)	N
605	chr6_qbl_hap6	2658298	2658299	rs72502580	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	XXbac-BPG181B23.7	rs72502580-T	NR	8E-9		0.0367455	[0.024-0.049] unit increase	Affymetrix [127266] (imputed)	N
605	chr6_qbl_hap6	2659237	2659238	rs4349859	21743469	Evans DM	2011-07-10	Nat Genet	Interaction between ERAP1 and HLA-B27 in ankylosing spondylitis implicates peptide handling in the mechanism for HLA-B27 in disease susceptibility.	Ankylosing spondylitis	3,023 European ancestry cases, 8,779 European ancestry controls	2,111 European ancestry cases, 4,483 European ancestry controls	6p21.33	HLA-B	rs4349859-A	0.04	1E-200	(less than)			Illumina [2223620] (imputed)	N
605	chr6_qbl_hap6	2660045	2660046	rs2596542	21499248	Kumar V	2011-04-17	Nat Genet	Genome-wide association study identifies a susceptibility locus for HCV-induced hepatocellular carcinoma.	Hepatocellular carcinoma	721 Japanese ancestry cases, 2,890 Japanese ancestry controls	673 Japanese ancestry cases, 2,596 Japanese ancestry controls	6p21.33	MICA	rs2596542-A	0.33	4E-13		1.39	[1.27-1.52]	Illumina [432703]	N
605	chr6_qbl_hap6	2660502	2660503	rs146482045	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.33		rs146482045-T	0.934	1E-13				Affymetrix [10369434] (imputed)	N
605	chr6_qbl_hap6	2661896	2661897	rs6911024	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	6p21.33	MICA, HLA-C	rs6911024-T	0.90242	2E-13		0.038308	[0.028-0.049] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
605	chr6_qbl_hap6	2661953	2661954	rs112142209	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DNAJB11	5,359 Icelandic ancestry individuals	NA	6p21.33		rs112142209-G	0.01759	6E-13		0.501147	[0.36-0.64] unit increase	Illumina [7506463] (imputed)	N
605	chr6_qbl_hap6	2663107	2663108	rs13220896	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	6p21.33	MICA	rs13220896-G	0.95996	2E-12		0.0328311	[0.024-0.042] unit increase	NR [13737936] (imputed)	N
605	chr6_qbl_hap6	2663107	2663108	rs13220896	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p21.33		rs13220896-?	NR	4E-15		0.0407174	[0.03-0.051] unit increase	Affymetrix [20259828] (imputed)	N
605	chr6_qbl_hap6	2664167	2664168	rs17200067	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MICA	5,360 Icelandic ancestry individuals	NA	6p21.33		rs17200067-T	0.03112	2E-87		1.02615	[0.92-1.13] unit increase	Illumina [7506463] (imputed)	N
605	chr6_qbl_hap6	2664167	2664168	rs17200067	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	MICA, HCP5, Y_RNA	rs17200067-T	0.0311245	6E-15	(EA, MHC class I polypeptide-related sequence A)	0.9664	[0.73-1.21] unit increase	Affymetrix [509946]	N
605	chr6_qbl_hap6	2664429	2664430	rs116135464	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Uveitis	2,616 European ancestry cases, 478,126 European ancestry controls, 125 East Asian ancestry cases, 174,600 East Asian ancestry controls	NA	6p21.33		rs116135464-T	NR	8E-191		1.8397	[1.72-1.96] unit increase	Affymetrix, Illumina [25844095] (imputed)	N
605	chr6_qbl_hap6	2664516	2664517	rs59440261	26553974	McLaren PJ	2015-11-09	Proc Natl Acad Sci U S A	Polymorphisms of large effect explain the majority of the host genetic contribution to variation of HIV-1 virus load.	Setpoint viral load in HIV-1 infection	6,315 European ancestry cases	NA	6p21.33	HLA-B	rs59440261-?	NR	2E-83				Affymetrix, Illumina [~ 8000000] (imputed)	N
605	chr6_qbl_hap6	2665032	2665033	rs2301747	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCP5, MICA	rs2301747-G	NR	2E-12		0.0308634	[0.022-0.039] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_qbl_hap6	2666014	2666015	rs2844518	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MICA	5,360 Icelandic ancestry individuals	NA	6p21.33		rs2844518-T	0.3275	2E-28		0.215281	[0.18-0.25] unit increase	Illumina [7506463] (imputed)	N
605	chr6_qbl_hap6	2666163	2666164	rs2507968	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Gynecologic disease (multivariate analysis)	up to 7,975 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs2507968-?		3E-9	(uterine fibroid, uterine cervical cancer)			Illumina [7645193] (imputed)	N
605	chr6_qbl_hap6	2667430	2667431	rs116795853	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	MICA	rs116795853-A	0.026	1E-18	(DnaJ homolog subfamily B member 11, DNAJB11.7110.2.3)	0.66	[0.5-0.82] unit increase	Affymetrix [10572788] (imputed)	N
605	chr6_qbl_hap6	2667707	2667708	rs2857281	26190474	Dai Y	2015-07-20	Sci Rep	Performance of genetic risk factors in prediction of trichloroethylene induced hypersensitivity syndrome.	Trichloroethylene-induced hypersensitivity syndrome	98 Han Chinese ancestry cases, 98 Han Chinese ancestry trichloroethylene-tolerant controls	Up to 74 Han Chinese ancestry cases, up to 1,661 Han Chinese ancestry trichloroethylene-tolerant controls	6p21.33	MICA	rs2857281-C	0.081	1E-37		11.92	[8.16-17.42]	Illumina [1392644]	N
605	chr6_qbl_hap6	2668024	2668025	rs12174396	32771030	Tangtanatakul P	2020-08-08	Arthritis Res Ther	Meta-analysis of genome-wide association study identifies FBN2 as a novel locus associated with systemic lupus erythematosus in Thai population.	Systemic lupus erythematosus	487 Thai cases, 1,606 Thai controls	405 Thai cases, 1,590 Thai controls	6p21.33	HCP5	rs12174396-G	0.18	2E-7		0.6904	[NR]	Illumina [421909] (imputed)	N
605	chr6_qbl_hap6	2669990	2669991	rs2263314	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCP5, MICA	rs2263314-T	NR	9E-9		0.0249923	[0.016-0.034] unit increase	Affymetrix [323858] (imputed)	N
605	chr6_qbl_hap6	2669990	2669991	rs2263314	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HCP5, MICA	rs2263314-T	NR	6E-9		0.0252674	[0.017-0.034] unit increase	Affymetrix [127266] (imputed)	N
605	chr6_qbl_hap6	2671051	2671052	rs12175489	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue adjusted for BMI	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	6p21.33	HCP5, HLA-B	rs12175489-A	0.15	2E-6	(men)			Affymetrix, Illumina [2500000] (imputed)	N
605	chr6_qbl_hap6	2671104	2671105	rs114291795	27157822	Hallberg P	2016-05-03	Lancet Diabetes Endocrinol	Genetic variants associated with antithyroid drug-induced agranulocytosis: a genome-wide association study in a European population.	Non-chemotherapy drug induced agranulocytosis	222 European ancestry cases, 12 cases, 5,170 European ancestry controls	NA	6p21.33	MICA, HCP5	rs114291795-?	NR	2E-15		3.57	[2?61-4?90]	Illumina [9380034] (imputed)	N
605	chr6_qbl_hap6	2671183	2671184	rs2523496	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cervical cancer	909 European ancestry cases, 238,249 European ancestry controls, 967 East Asian ancestry cases, 60,614 East Asian ancestry controls	NA	6p21.33		rs2523496-C	NR	2E-13		0.2559	[0.19-0.32] unit decrease	Affymetrix, Illumina [25777760] (imputed)	N
605	chr6_qbl_hap6	2671183	2671184	rs2523496	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cervical cancer	6,563 European ancestry cases, 410,350 European ancestry controls	NA	6p21.33		rs2523496-T	NR	4E-25		1.2076	NR	Affymetrix [7846216] (imputed)	N
605	chr6_qbl_hap6	2671297	2671301	rs201838897	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (salicylic acid and derivatives)	61,583 European ancestry cases, 50,427 European ancestry controls, 41,461 East Asian ancestry cases, 137,265 East Asian ancestry controls	NA	6p21.33		rs201838897-C	NR	9E-17		0.0893	[0.068-0.11] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
605	chr6_qbl_hap6	2671297	2671301	rs201838897	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls, 49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	6p21.33		rs201838897-C	NR	4E-14		0.0785	[0.058-0.099] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
605	chr6_qbl_hap6	2671337	2671338	rs6938453	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCP5, MICA	rs6938453-A	NR	2E-14		0.0262104	[0.019-0.033] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_qbl_hap6	2671337	2671338	rs6938453	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCP5, MICA	rs6938453-A	NR	3E-14		0.028343	[0.021-0.036] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_qbl_hap6	2671337	2671338	rs6938453	33794208	Bowden SJ	2021-04-01	Lancet Oncol	Genetic variation in cervical preinvasive and invasive disease: a genome-wide association study.	Cervical intraepithelial neoplasia grade 3 and invasive cervical cancer	764 European ancestry invasive cervical cancer cases, 4,005 European ancestry cervical intraepithelial neoplasia grade 3 cases, 145,545 European ancestry controls	NA	6p21.33	MICA	rs6938453-?	NR	2E-17		0.79	[0.75-0.83]	Affymetrix [9600464] (imputed)	N
605	chr6_qbl_hap6	2671337	2671338	rs6938453	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	6p21.33	NR	rs6938453-?	NR	6E-29	(MIC-A)	0.979642	[0.81-1.15] unit decrease	Illumina [11901634] (imputed)	N
605	chr6_qbl_hap6	2671453	2671454	rs748543364	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-3 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	6p21.33		rs748543364-AG	0.654332	5E-8		0.0236619	[0.015-0.032] unit decrease	NR [11722792] (imputed)	N
605	chr6_qbl_hap6	2671453	2671454	rs748543364	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Docosahexaenoic acid levels	115,006 European ancestry individuals	NA	6p21.33		rs748543364-AG	0.654332	7E-10		0.0264866	[0.018-0.035] unit decrease	NR [11722792] (imputed)	N
605	chr6_qbl_hap6	2671517	2671518	rs28559870	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.33		rs28559870-C	0.824	3E-54				Affymetrix [10369434] (imputed)	N
605	chr6_qbl_hap6	2671517	2671518	rs28559870	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.33	NR	rs28559870-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
605	chr6_qbl_hap6	2671518	2671519	rs28436034	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCP5, MICA	rs28436034-G	NR	8E-9		0.022753	[0.015-0.03] unit increase	Affymetrix [323858] (imputed)	N
605	chr6_qbl_hap6	2671518	2671519	rs28436034	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HCP5, MICA	rs28436034-G	NR	4E-8		0.0216205	[0.014-0.029] unit increase	Affymetrix [127266] (imputed)	N
605	chr6_qbl_hap6	2671518	2671519	rs28436034	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCP5, MICA	rs28436034-G	NR	4E-11		0.02346	[0.016-0.03] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_qbl_hap6	2671518	2671519	rs28436034	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCP5, MICA	rs28436034-G	NR	2E-13		0.0283594	[0.021-0.036] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_qbl_hap6	2672314	2672315	rs2853981	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.33	MICA	rs2853981-G	NR	5E-8	(women)	0.0250092	[0.016-0.034] unit decrease	Illumina [13520550] (imputed)	N
605	chr6_qbl_hap6	2672589	2672590	rs41560824	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LRPAP1	5,361 Icelandic ancestry individuals	NA	6p21.33		rs41560824-G	0.0175	3E-261		2.24371	[2.12-2.37] unit increase	Illumina [7506463] (imputed)	N
605	chr6_qbl_hap6	2672661	2672662	rs1131896	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	6p21.33	MICA	rs1131896-A	0.231391	1E-19		0.028329957	[0.022-0.034] unit increase	Affymetrix [93095623] (imputed)	N
605	chr6_qbl_hap6	2672661	2672662	rs1131896	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	6p21.33	MICA	rs1131896-A	0.2312	1E-29		0.04771386	[0.039-0.056] unit decrease	Affymetrix [~ 2500000] (imputed)	N
605	chr6_qbl_hap6	2672661	2672662	rs1131896	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	6p21.33	MICA	rs1131896-A	0.2312	2E-28		0.04672725	[0.038-0.055] unit increase	Affymetrix [~ 2500000] (imputed)	N
605	chr6_qbl_hap6	2672850	2672851	rs2853977	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.33	MICA	rs2853977-T	NR	1E-10		0.0208107	[0.015-0.027] unit decrease	Illumina [13520550] (imputed)	N
605	chr6_qbl_hap6	2672937	2672938	rs3828879	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCP5, MICA	rs3828879-T	NR	3E-10		0.0269729	[0.019-0.035] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_qbl_hap6	2673580	2673581	rs112243036	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCP5, MICA	rs112243036-A	NR	1E-9		0.0293452	[0.02-0.039] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_qbl_hap6	2673965	2673966	rs2256174	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	6p21.33	MICA, HCP5	rs2256174-A	0.4616	2E-7		0.0375	[0.023-0.052] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
605	chr6_qbl_hap6	2673992	2673993	rs2256175	28041642	Carmona FD	2016-12-29	Am J Hum Genet	A Genome-wide Association Study Identifies Risk Alleles in Plasminogen and P4HA2 Associated with Giant Cell Arteritis.	Giant cell arteritis	2,134 European ancestry cases, 9,125 European ancestry controls	NA	6p21.33	HLA-B	rs2256175-?	NR	8E-6		1.18		Illumina [1844133] (imputed)	N
605	chr6_qbl_hap6	2673992	2673993	rs2256175	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	6p21.33	NR	rs2256175-?		8E-35	(MICA)			Illumina [NR]	N
605	chr6_qbl_hap6	2674072	2674073	rs2256183	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCP5, MICA	rs2256183-G	NR	1E-10		0.018139	[0.013-0.024] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_qbl_hap6	2674072	2674073	rs2256183	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of white cells	171,996 European ancestry individuals	NA	6p21.33	HCP5, MICA	rs2256183-G	0.4973	1E-9		0.0210357	[0.014-0.028] unit increase	Affymetrix [~ 2500000] (imputed)	N
605	chr6_qbl_hap6	2674072	2674073	rs2256183	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	6p21.33	MICA	rs2256183-A	0.45	8E-29		0.04	[NR] unit increase	Affymetrix, Illumina [2834208] (imputed)	N
605	chr6_qbl_hap6	2674894	2674895	rs2853968	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic hepatitis C infection	273 European ancestry cases, 351,740 European ancestry controls, 7,110 East Asian ancestry cases, 169,588 East Asian ancestry controls	NA	6p21.33		rs2853968-G	NR	2E-10		0.1124	[0.078-0.147] unit increase	Affymetrix, Illumina [20457788] (imputed)	N
605	chr6_qbl_hap6	2676260	2676261	rs2853975	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein B2M	5,353 Icelandic ancestry individuals	NA	6p21.33		rs2853975-T	0.2249	9E-19		0.18093	[0.14-0.22] unit increase	Illumina [7506463] (imputed)	N
605	chr6_qbl_hap6	2676260	2676261	rs2853975	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCP5, MICA	rs2853975-T	NR	3E-9		0.0197511	[0.013-0.026] unit increase	Affymetrix [323123] (imputed)	N
605	chr6_qbl_hap6	2676454	2676455	rs1882	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	6p21.33	MICA	rs1882-G	0.4676	1E-19		0.03244427	[0.025-0.039] unit decrease	Affymetrix [~ 2500000] (imputed)	N
605	chr6_qbl_hap6	2676454	2676455	rs1882	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	6p21.33	MICA	rs1882-G	0.4671	5E-19		0.0315247	[0.025-0.038] unit increase	Affymetrix [~ 2500000] (imputed)	N
605	chr6_qbl_hap6	2676673	2676674	rs9266834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	6p21.33		rs9266834-T	0.889775	2E-11		0.0441975	[0.031-0.057] unit decrease	NR [11722792] (imputed)	N
605	chr6_qbl_hap6	2676673	2676674	rs9266834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	6p21.33		rs9266834-T	0.889775	5E-14		0.0490222	[0.036-0.062] unit decrease	NR [11722792] (imputed)	N
605	chr6_qbl_hap6	2676673	2676674	rs9266834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6p21.33		rs9266834-T	0.889775	2E-11		0.0437642	[0.031-0.057] unit decrease	NR [11722792] (imputed)	N
605	chr6_qbl_hap6	2676673	2676674	rs9266834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	6p21.33		rs9266834-T	0.889775	2E-11		0.0427432	[0.03-0.055] unit decrease	NR [11722792] (imputed)	N
605	chr6_qbl_hap6	2676673	2676674	rs9266834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in IDL	115,082 European ancestry individuals	NA	6p21.33		rs9266834-T	0.889775	9E-15		0.0506081	[0.038-0.063] unit increase	NR [11722792] (imputed)	N
605	chr6_qbl_hap6	2676673	2676674	rs9266834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	6p21.33		rs9266834-T	0.889775	3E-9		0.0392601	[0.026-0.052] unit increase	NR [11722792] (imputed)	N
605	chr6_qbl_hap6	2676673	2676674	rs9266834	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCP5	rs9266834-A	NR	8E-9		0.0263611	[0.017-0.035] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_qbl_hap6	2676673	2676674	rs9266834	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCP5	rs9266834-A	NR	1E-9		0.0303575	[0.021-0.04] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_qbl_hap6	2679030	2679031	rs2596528	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCP5	rs2596528-C	NR	1E-19		0.0277879	[0.022-0.034] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_qbl_hap6	2732073	2732074	rs2244839	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCP5	rs2244839-A	NR	8E-12		0.0228771	[0.016-0.029] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_qbl_hap6	2732095	2732096	rs2596449	26151496	Chen PL	2015-07-07	Nat Commun	Genetic determinants of antithyroid drug-induced agranulocytosis by human leukocyte antigen genotyping and genome-wide association study.	Thionamide-induced agranulocytosis in Graves' disease	21 East Asian ancestry cases with agranulocytosis, 662 East Asian ancestry cases without agranulocytosis	21 East Asian ancestry cases with agranulocytosis, 546 East Asian ancestry cases without agranulocytosis	6p21.33	HLA	rs2596449-A	0.047	2E-13	(trend)	6.35	[3.68-10.96] (allelic)	Affymetrix [522980]	N
605	chr6_qbl_hap6	2733364	2733365	rs9688839	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MICB	5,365 Icelandic ancestry individuals	NA	6p21.33		rs9688839-G	0.06745	2E-66		0.633901	[0.56-0.71] unit increase	Illumina [7506463] (imputed)	N
605	chr6_qbl_hap6	2733551	2733552	rs3094603	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	6p21.33		rs3094603-G	0.704515	7E-9		0.0251235	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
605	chr6_qbl_hap6	2733719	2733720	rs14597	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	6p21.33	NR	rs14597-A	0.433533	3E-9		0.0405708	[0.027-0.054] unit increase	Affymetrix [17914406] (imputed)	N
605	chr6_qbl_hap6	2733787	2733788	rs1055569	25897833	Thompson AG	2015-04-21	Transl Psychiatry	Genome-wide association study of behavioural and psychiatric features in human prion disease.	Psychotic symptoms and prion disease	Up to 170 cases, 5,200 controls	NA	6p21.33	HCG26	rs1055569-?	0.291	3E-6		2.36	[1.66-3.35]	Illumina [518938]	N
605	chr6_qbl_hap6	2734014	2734015	rs2523659	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large HDL	115,082 European ancestry individuals	NA	6p21.33		rs2523659-T	0.698051	3E-11		0.0290837	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
605	chr6_qbl_hap6	2734014	2734015	rs2523659	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCP5	rs2523659-G	NR	4E-8		0.0169129	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_qbl_hap6	2734356	2734357	rs3828889	30833571	Wiberg A	2019-03-04	Nat Commun	A genome-wide association analysis identifies 16 novel susceptibility loci for carpal tunnel syndrome.	Carpal tunnel syndrome	12,312 European ancestry cases, 389,344 European ancestry controls	NA	6p21.33	Intergenic	rs3828889-C	0.732	2E-8		1.09	[1.06-1.12]	Affymetrix [84000000] (imputed)	N
605	chr6_qbl_hap6	2734374	2734375	rs3828890	22797727	Okada Y	2012-07-15	Nat Genet	Meta-analysis identifies multiple loci associated with kidney function-related traits in east Asian populations.	Renal function-related traits (sCR)	42,257 East Asian, South Asian, and South East Asian ancestry individuals	19,662 East Asian ancestry individuals	6p21.33	MHC	rs3828890-G	0.11	3E-9		0.0069	[0.0046-0.0092] mg/dl increase	Affymetrix, Illumina [2353587] (imputed)	N
605	chr6_qbl_hap6	2734374	2734375	rs3828890	22797727	Okada Y	2012-07-15	Nat Genet	Meta-analysis identifies multiple loci associated with kidney function-related traits in east Asian populations.	Renal function-related traits (eGRFcrea)	42,451 East Asian, South Asian, and South East Asian ancestry individuals	19,636 East Asian ancestry individuals	6p21.33	MHC	rs3828890-G	0.11	1E-9		0.0079	[0.0054-0.0105] ml/min/1.73m2 decrease	Affymetrix, Illumina [2353587] (imputed)	N
605	chr6_qbl_hap6	2734674	2734674	rs9281492	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.33	HCP5	rs9281492-A	0.7482	1E-6		0.041	[0.024-0.058] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
605	chr6_qbl_hap6	2735054	2735055	rs4413654	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCP5	rs4413654-A	NR	2E-9		0.0202622	[0.014-0.027] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_qbl_hap6	2735388	2735389	rs145038238	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Treatment or medication use - levothyroxine sodium (UKB data field 20003_1141191044)	18,688 European ancestry cases, 437,588 European ancestry controls	NA	6p21.33		rs145038238-A	0.003929	1E-9		0.54	[0.36-0.72] unit increase	NR [11842647] (imputed)	N
605	chr6_qbl_hap6	2736436	2736437	rs2844503	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCP5	rs2844503-A	NR	2E-11		0.0191544	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_qbl_hap6	2736436	2736437	rs2844503	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HCP5	rs2844503-A	NR	6E-11		0.0185817	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_qbl_hap6	2736436	2736437	rs2844503	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCP5	rs2844503-A	NR	2E-11		0.0189754	[0.013-0.025] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_qbl_hap6	2736436	2736437	rs2844503	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCP5	rs2844503-A	NR	4E-10		0.0193246	[0.013-0.025] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_qbl_hap6	2736436	2736437	rs2844503	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HCP5	rs2844503-A	NR	3E-10		0.018057	[0.012-0.024] unit increase	Affymetrix [321169] (imputed)	N
605	chr6_qbl_hap6	2736487	2736488	rs3131643	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Creatinine levels	110,051 European ancestry individuals	NA	6p21.33		rs3131643-G	0.840442	8E-10		0.0296468	[0.02-0.039] unit decrease	NR [11722792] (imputed)	N
605	chr6_qbl_hap6	2736487	2736488	rs3131643	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.33		rs3131643-G	0.84	2E-102				Affymetrix [10369434] (imputed)	N
605	chr6_qbl_hap6	2736487	2736488	rs3131643	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p21.33	HCP5	rs3131643-A	0.158883	4E-12		0.027895512	[0.02-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
605	chr6_qbl_hap6	2736487	2736488	rs3131643	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.33	HCP5	rs3131643-A	0.15885	1E-15		0.04733108	[0.036-0.059] unit decrease	Affymetrix [93095623] (imputed)	N
605	chr6_qbl_hap6	2736487	2736488	rs3131643	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count (basophil)	171,846 European ancestry individuals	NA	6p21.33	HCP5	rs3131643-A	0.1597	2E-24		0.04853096	[0.039-0.058] unit decrease	Affymetrix [~ 2500000] (imputed)	N
605	chr6_qbl_hap6	2736487	2736488	rs3131643	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	6p21.33	HCP5	rs3131643-A	0.1597	4E-107		0.1077558	[0.098-0.117] unit decrease	Affymetrix [~ 2500000] (imputed)	N
605	chr6_qbl_hap6	2736617	2736618	rs79501286	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Chickenpox	107,769 European ancestry cases, 15,982 European ancestry controls	NA	6p21.33	NR	rs79501286-?	NR	2E-9		0.13	[0.088-0.172] unit increase	Illumina [at least 560000] (imputed)	N
605	chr6_qbl_hap6	2738309	2738310	rs2523655	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	150,545 East Asian ancestry individuals	NA	6p21.33		rs2523655-G	0.870322	1E-8		0.0292114	[0.019-0.039] unit decrease	Illumina [13478866] (imputed)	N
605	chr6_qbl_hap6	2739219	2739220	rs2523653	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Angina pectoris	14,007 East Asian ancestry cases, 145,158 East Asian ancestry controls	NA	6p21.33		rs2523653-G	0.805782921	3E-12		0.12027492	[0.087-0.154] unit decrease	Illumina [13426705] (imputed)	N
605	chr6_qbl_hap6	2739269	2739270	rs17206973	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p21.33	NR	rs17206973-?	NR	2E-22		0.2134	[0.17-0.26] unit decrease	Illumina [at least 560000] (imputed)	N
605	chr6_qbl_hap6	2740171	2740172	rs2248372	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCP5	rs2248372-A	NR	4E-8		0.0185638	[0.012-0.025] unit increase	Affymetrix [323858] (imputed)	N
605	chr6_qbl_hap6	2740171	2740172	rs2248372	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	HCP5	rs2248372-A	0.3318273	1E-19	(MHC class I polypeptide-related sequence B)	0.4168	[0.33-0.5] unit increase	Affymetrix [509946]	N
605	chr6_qbl_hap6	2740501	2740502	rs2248462	22286212	Urayama KY	2012-01-27	J Natl Cancer Inst	Genome-wide association study of classical Hodgkin lymphoma and Epstein-Barr virus status-defined subgroups.	Hodgkin's lymphoma	1,200 European ancestry cases, 6,417 European ancestry controls	563 European ancestry cases, 613 European ancestry controls	6p21.33	MICB	rs2248462-?	NR	7E-16	(Total cHL)	1.64	[1.45-1.85]	Illumina [502514]	N
605	chr6_qbl_hap6	2741293	2741294	rs2516513	32376702	Shen J	2020-05-06	mSphere	Genetic Association Reveals Protection against Recurrence of Clostridium difficile Infection with Bezlotoxumab Treatment.	Recurrence of Clostridium difficile infection x bezlotuxumab treatment interaction (2df test)	704 European, African American and Asian ancestry individuals	NA	6p21.33	NR	rs2516513-T	0.41	3E-8				Affymetrix [7570264] (imputed)	N
605	chr6_qbl_hap6	2742357	2742358	rs116518228	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCP5	rs116518228-T	NR	2E-8		0.032993	[0.022-0.044] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_qbl_hap6	2742567	2742568	rs3749946	24837172	Juyal G	2014-05-16	Gut	Genome-wide association scan in north Indians reveals three novel HLA-independent risk loci for ulcerative colitis.	Ulcerative colitis	603 North Indian ancestry cases, 622 North Indian ancestry controls	733 North Indian ancestry cases, 1,148 North Indian ancestry controls	6p21.33	3.8-1, HCG26	rs3749946-A	0.07	2E-15		1.97	[1.66-2.33]	Illumina [480391]	N
605	chr6_qbl_hap6	2742681	2742682	rs3099844	22399527	Kristiansson K	2012-03-07	Circ Cardiovasc Genet	Genome-wide screen for metabolic syndrome susceptibility Loci reveals strong lipid gene contribution but no evidence for common genetic basis for clustering of metabolic syndrome traits.	Metabolic syndrome	2,637 European ancestry cases, 7,927 European ancestry controls	NA	6p21.33	HCG26, MICB	rs3099844-A	0.08	2E-8	(HDL)	0.15	[NR] mmol/l decrease	Illumina [1257079] (imputed)	N
605	chr6_qbl_hap6	2742681	2742682	rs3099844	20662065	Clancy RM	2010-07-26	Arthritis Rheum	Identification of candidate loci at 6p21 and 21q22 in a genome-wide association study of cardiac manifestations of neonatal lupus.	Neonatal lupus	116 European ancestry cases, 3,351 European ancestry controls	NA	6p21.33	NFKBIL1, LTA, AIF1, TNF, LTB	rs3099844-?	0.11	5E-10		3.34	[2.29-4.89]	Illumina [346110]	N
605	chr6_qbl_hap6	2742727	2742728	rs2523650	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	6p21.33	HCG26, MICB, HCP5, MCCD1, ATP6V1G2-DDX39B, DDX39B, SNORD117, SNORD84, DDX39B-AS1, ATP6V1G2, NFKBIL1, MICA, LTA, TNF, LTB, LST1, NCR3, HLA-B, AIF1, PRRC2A, SNORA38, MIR6832, BAG6, APOM, C6orf47, GPANK1, CSNK2B, LY6G5B, LY6G5C, ABHD16A, MIR4646, LY6G6F, LY6G6E, LY6G6D, LY6G6C, C6orf25, DDAH2	rs2523650-?		5E-7	(recessive)	0.167	[0.1-0.23] unit decrease	Illumina [1492601] (imputed)	N
605	chr6_qbl_hap6	2742727	2742728	rs2523650	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	6p21.33	HCG26, MICB, HCP5, MCCD1, ATP6V1G2-DDX39B, DDX39B, SNORD117, SNORD84, DDX39B-AS1, ATP6V1G2, NFKBIL1, MICA, LTA, TNF, LTB, LST1, NCR3, HLA-B, AIF1, PRRC2A, SNORA38, MIR6832, BAG6, APOM, C6orf47, GPANK1, CSNK2B, LY6G5B, LY6G5C, ABHD16A, MIR4646, LY6G6F, LY6G6E, LY6G6D, LY6G6C, C6orf25, DDAH2	rs2523650-?		3E-6	(additive)	0.121	[0.07-0.172] unit decrease	Illumina [1492601] (imputed)	N
605	chr6_qbl_hap6	2742727	2742728	rs2523650	31189108	O'Connor D	2019-06-01	Cell Rep	Common Genetic Variations Associated with the Persistence of Immunity following Childhood Immunization.	Tetanus toxoid IgG concentrations post childhood immunization	549 European ancestry children and adolescents	1,303 European ancestry children and adolescents	6p21.33	NR	rs2523650-?	NR	1E-9		0.1117	[0.076-0.147] unit increase	Illumina [~ 6700000] (imputed)	N
605	chr6_qbl_hap6	2743325	2743326	rs2516420	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	6p21.33	MHC	rs2516420-C	0.9263	1E-7		1.1	[1.06-1.13]	Affymetrix, Illumina [16900397] (imputed)	N
605	chr6_qbl_hap6	2743347	2743348	rs2523648	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCP5	rs2523648-A	NR	4E-8		0.0208118	[0.013-0.028] unit increase	Affymetrix [323858] (imputed)	N
605	chr6_qbl_hap6	2743347	2743348	rs2523648	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HCP5	rs2523648-A	NR	5E-8		0.0207421	[0.013-0.028] unit increase	Affymetrix [127266] (imputed)	N
605	chr6_qbl_hap6	2744421	2744422	rs2905752	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	6p21.33	Intergenic	rs2905752-G	NR	2E-7		0.0193848	[0.012-0.027] unit decrease	Illumina [13519193] (imputed)	N
605	chr6_qbl_hap6	2744614	2744615	rs2523710	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	Intergenic	rs2523710-A	0.2052314	6E-15	(EA, MHC class I polypeptide-related sequence A)	0.4247	[0.32-0.53] unit decrease	Affymetrix [509946]	N
605	chr6_qbl_hap6	2745552	2745553	rs2904602	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCP5	rs2904602-A	NR	1E-9		0.0273048	[0.019-0.036] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_qbl_hap6	2745743	2745744	rs143439747	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs143439747-A	0.049	9E-14	(Natural cytotoxicity triggering receptor 3, NCR3.3003.29.2)	0.42	[0.3-0.54] unit decrease	Affymetrix [10572788] (imputed)	N
605	chr6_qbl_hap6	2745743	2745744	rs143439747	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mumps	31,227 European ancestry cases, 54,153 European ancestry controls	NA	6p21.33	NR	rs143439747-?	NR	4E-6		0.1204	[0.069-0.171] unit increase	Illumina [at least 560000] (imputed)	N
605	chr6_qbl_hap6	2745807	2745808	rs28525417	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCP5	rs28525417-G	NR	3E-8		0.0185461	[0.012-0.025] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_qbl_hap6	2745807	2745808	rs28525417	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HCP5	rs28525417-G	NR	4E-8		0.0171664	[0.011-0.023] unit increase	Affymetrix [321169] (imputed)	N
605	chr6_qbl_hap6	2745996	2745997	rs2905741	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (underestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	6p21.33	NR	rs2905741-?	NR	1E-8		5.689	NR z score increase	Illumina [at least 830937] (imputed)	N
605	chr6_qbl_hap6	2746114	2746118	rs144801046	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls, 20,367 East Asian ancestry cases, 158,359 East Asian ancestry controls	NA	6p21.33		rs144801046-C	NR	2E-13		0.1571	[0.12-0.2] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
605	chr6_qbl_hap6	2746114	2746118	rs144801046	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (beta blocking agents)	20,367 East Asian ancestry cases, 158,359 East Asian ancestry controls	NA	6p21.33		rs144801046-C	0.072674614	2E-13		0.15705363	[0.12-0.2] unit increase	Illumina [13134967] (imputed)	N
605	chr6_qbl_hap6	2746136	2746137	rs2904789	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.33	NR	rs2904789-?	NR	5E-11				Affymetrix [~ 8270000] (imputed)	N
605	chr6_qbl_hap6	2746994	2746995	rs2905736	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MICB	5,365 Icelandic ancestry individuals	NA	6p21.33		rs2905736-A	0.0328	1E-193		1.45308	[1.36-1.55] unit increase	Illumina [7506463] (imputed)	N
605	chr6_qbl_hap6	2746994	2746995	rs2905736	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	MICB, LST1, HCP5, XXbac-BPG181B23.6, XXbac-BPG16N22.5, DDX39B, ATP6V1G2, TNF, NCR3, PRRC2A, CSNK2B, GPANK1, LY6G5B, CLIC1, MSH5, VARS, Y_RNA, PPIAP9, RPL15P4, MCCD1, SNORD117, ATP6V1G2-DDX39B, AL662801.1, DDX39B-AS1, SNORD84, NFKBIL1, LTB, LTA, SNORA38, BAG6, CSNK2B-LY6G5B--991, C6orf47-AS1, C6orf47, MSH5-SAPCD1	rs2905736-A	0.03109328	2E-27	(EA, MHC class I polypeptide-related sequence B)	1.367	[1.13-1.61] unit increase	Affymetrix [509946]	N
605	chr6_qbl_hap6	2747251	2747252	rs2428501	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.33	Intergenic	rs2428501-G	NR	1E-6	(men)	0.0231006	[0.014-0.032] unit decrease	Illumina [13520550] (imputed)	N
605	chr6_qbl_hap6	2748066	2748067	rs144596166	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MICB	rs144596166-G	NR	4E-8		0.0340564	[0.022-0.046] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_qbl_hap6	2749227	2749228	rs9267235	31235810	Fung K	2019-06-24	Sci Rep	Genome-wide association study identifies loci for arterial stiffness index in 127,121 UK Biobank participants.	Arterial stiffness index	127,121 European ancestry individuals	NA	6p21.33	MICB	rs9267235-T	0.954	7E-6		0.044	[0.024-0.064] unit increase	Affymetrix [~ 10446505] (imputed)	N
605	chr6_qbl_hap6	2749810	2749811	rs28664826	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs28664826-A	0.396	1E-46	(MHC class I polypeptide-related sequence B, MICB.5102.55.3)	0.38	[0.32-0.44] unit decrease	Affymetrix [10572788] (imputed)	N
605	chr6_qbl_hap6	2749964	2749965	rs9267257	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p21.33	NR	rs9267257-?	NR	2E-9		0.0961	[0.065-0.127] unit decrease	Illumina [at least 560000] (imputed)	N
605	chr6_qbl_hap6	2751186	2751187	rs150971914	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MICB	rs150971914-T	NR	2E-15		0.0653082	[0.049-0.081] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_qbl_hap6	2751186	2751187	rs150971914	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MICB	rs150971914-T	NR	7E-9		0.0517554	[0.034-0.069] unit decrease	Affymetrix [323123] (imputed)	N
606	chr6_qbl_hap6	2752685	2752686	rs2016572	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	6p21.33	NR	rs2016572-G	0.331938	6E-12		0.0260936	[0.019-0.033] unit increase	Affymetrix [16577313] (imputed)	N
606	chr6_qbl_hap6	2753044	2753045	rs12192123	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol use disorder	57,564 European ancestry cases, 256,395 European ancestry controls	NA	6p21.33	NR	rs12192123-A	0.2321	2E-8		5.593	[NR] unit decrease	Affymetrix [7003540] (imputed)	N
606	chr6_qbl_hap6	2753671	2753672	rs2904783	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p21.33	NR	rs2904783-C	0.402	9E-6	(IFNalpha_STAT1_of_CD4p_T)			Illumina [5084123] (imputed)	N
606	chr6_qbl_hap6	2754742	2754743	rs12195665	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MICB	rs12195665-A	NR	3E-10		0.0197044	[0.014-0.026] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_qbl_hap6	2754742	2754743	rs12195665	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	MICB	rs12195665-A	NR	4E-10		0.0195546	[0.013-0.026] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_qbl_hap6	2754742	2754743	rs12195665	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	MICB	rs12195665-A	NR	2E-12		0.0223504	[0.016-0.029] unit increase	Affymetrix [321169] (imputed)	N
606	chr6_qbl_hap6	2754752	2754753	rs12202667	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MICB	rs12202667-C	NR	4E-8		0.018764	[0.012-0.025] unit decrease	Affymetrix [323123] (imputed)	N
606	chr6_qbl_hap6	2754831	2754832	rs2904597	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MICB	rs2904597-G	NR	3E-10		0.0229697	[0.016-0.03] unit increase	Affymetrix [323858] (imputed)	N
606	chr6_qbl_hap6	2754831	2754832	rs2904597	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	MICB	rs2904597-G	NR	4E-10		0.0228883	[0.016-0.03] unit increase	Affymetrix [127266] (imputed)	N
606	chr6_qbl_hap6	2754831	2754832	rs2904597	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.33	MICB	rs2904597-G	NR	4E-11		0.0218802	[0.015-0.028] unit increase	Affymetrix [321114] (imputed)	N
606	chr6_qbl_hap6	2755071	2755072	rs2507971	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	6p21.33	MICB	rs2507971-A	0.382584	8E-17		0.022113472	[0.017-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
606	chr6_qbl_hap6	2755071	2755072	rs2507971	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	6p21.33	MICB	rs2507971-T	0.6165	3E-49		0.05419588	[0.047-0.061] unit decrease	Affymetrix [~ 2500000] (imputed)	N
606	chr6_qbl_hap6	2755191	2755192	rs9267325	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	MICB	rs9267325-C	NR	2E-8		0.0226374	[0.015-0.031] unit increase	Affymetrix [321169] (imputed)	N
606	chr6_qbl_hap6	2755257	2755258	rs3094006	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	6p21.33	MICB	rs3094006-C	0.726	1E-12		0.02938566	[0.021-0.037] unit decrease	Affymetrix [~ 2500000] (imputed)	N
606	chr6_qbl_hap6	2755410	2755411	rs2395040	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs2395040-A	0.535	6E-23				Affymetrix [10369434] (imputed)	N
606	chr6_qbl_hap6	2755410	2755411	rs2395040	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	6p21.33	NR	rs2395040-?	NR	9E-7				Illumina [at least 7383741] (imputed)	N
606	chr6_qbl_hap6	2755655	2755656	rs113239947	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	MICB	rs113239947-T	NR	5E-10		0.0206455	[0.014-0.027] unit increase	Affymetrix [321169] (imputed)	N
606	chr6_qbl_hap6	2756023	2756024	rs2516411	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MICB	5,339 Icelandic ancestry individuals	NA	6p21.33		rs2516411-A	0.1051	9E-72		0.494444	[0.44-0.55] unit increase	Illumina [7506463] (imputed)	N
606	chr6_qbl_hap6	2756642	2756643	rs2534681	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MICB	rs2534681-A	NR	6E-11		0.0184043	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_qbl_hap6	2756642	2756643	rs2534681	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	MICB	rs2534681-A	NR	1E-10		0.0181502	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_qbl_hap6	2756642	2756643	rs2534681	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	MICB	rs2534681-A	NR	1E-11		0.0192736	[0.014-0.025] unit increase	Affymetrix [321169] (imputed)	N
606	chr6_qbl_hap6	2756642	2756643	rs2534681	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	6p21.33	Intergenic	rs2534681-A	0.4679	1E-10	(MTAG)	0.0106	[0.0073-0.0139] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
606	chr6_qbl_hap6	2757091	2757092	rs72844762	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.33		rs72844762-G	0.967	3E-22				Affymetrix [10369434] (imputed)	N
606	chr6_qbl_hap6	2757091	2757092	rs72844762	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	6p21.33	MICB	rs72844762-A	0.034026	3E-11		0.042991024	[0.03-0.056] unit increase	Affymetrix [93095623] (imputed)	N
606	chr6_qbl_hap6	2757202	2757203	rs2516408	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	MICB	rs2516408-A	NR	1E-10		0.0219255	[0.015-0.029] unit decrease	Affymetrix [127266] (imputed)	N
606	chr6_qbl_hap6	2758765	2758766	rs3094005	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	HLA-B, MICB, DDX39B, HCG22, HLA-C, XXbac-BPG248L24.12, ZDHHC20P2, MICA, HCP5, SNORD84, LTB, LTA, LST1, NCR3, HCG27, XXbac-BPG299F13.14, XXbac-BPG299F13.15, XXbac-BPG299F13.16, MIR6891, DHFRP2, RNU6-283P, AL671883.1, FGFR3P1, HLA-S, XXbac-BPG181B23.7, LINC01149, XXbac-BPG181B23.6, Y_RNA, XXbac-BPG16N22.5, PPIAP9, DDX39B-AS1, SNORD117, ATP6V1G2-DDX39B, AL662801.1, ATP6V1G2, NFKBIL1, TNF	rs3094005-T	0.09437751	4E-38	(MHC class I polypeptide-related sequence B)	0.9308	[0.8-1.07] unit decrease	Affymetrix [509946]	N
606	chr6_qbl_hap6	2758821	2758822	rs2534674	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	MICB, Y_RNA	rs2534674-T	0.3517588	7E-16	(EA, MHC class I polypeptide-related sequence B)	0.3579	[0.27-0.44] unit increase	Affymetrix [509946]	N
606	chr6_qbl_hap6	2759775	2759776	rs3828919	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	6p21.33	MICB	rs3828919-A	0.044243	9E-12		0.038664818	[0.028-0.05] unit increase	Affymetrix [93095623] (imputed)	N
606	chr6_qbl_hap6	2759935	2759936	rs41293864	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Strep throat	52,487 European ancestry cases, 22,017 European ancestry controls	NA	6p21.33	NR	rs41293864-?	NR	2E-8		0.0446	[0.029-0.06] unit increase	Illumina [at least 560000] (imputed)	N
606	chr6_qbl_hap6	2759993	2759994	rs9267374	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MICB	rs9267374-C	NR	1E-11		0.0224498	[0.016-0.029] unit decrease	Affymetrix [323123] (imputed)	N
606	chr6_qbl_hap6	2761700	2761701	rs9378160	30940813	Kranzler HR	2019-04-02	Nat Commun	Genome-wide association study of alcohol consumption and use disorder in 274,424 individuals from multiple populations.	Alcohol use disorder	34,658 European American cases, 167,346 European American controls, 17,267 African American cases, 39,381 African American controls, 3,449 Latino American cases, 10,726 Latino American controls, 164 East Asian American cases, 1,210 East Asian American controls, 46 South Asian American cases, 144 South Asian American controls	NA	6p21.33	MICB	rs9378160-C	0.719	2E-8	(Latino)	1.1890606	[1.13-1.25]	Affymetrix [up to 12500000] (imputed)	N
606	chr6_qbl_hap6	2761919	2761920	rs188935761	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 142,336 Japanese ancestry controls	NA	6p21.33	MICB	rs188935761-?	NR	5E-6		0.613998	[0.35-0.88] unit increase	Illumina [19707525] (imputed)	N
606	chr6_qbl_hap6	2763299	2763300	rs2534664	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MICB	rs2534664-A	NR	2E-13		0.0226003	[0.017-0.029] unit decrease	Affymetrix [323123] (imputed)	N
606	chr6_qbl_hap6	2765503	2765504	rs2855811	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.33	NR	rs2855811-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
606	chr6_qbl_hap6	2766424	2766425	rs2855812	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.33	NR	rs2855812-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
606	chr6_qbl_hap6	2766424	2766425	rs2855812	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma and major depressive disorder	46,802 European ancestry asthma cases, 59,851 European ancestry major depressive disorder cases, 460,635 European ancestry controls	NA	6p21.33	AIF1, APOM, ATP6V1G2, BAG6, C6orf15, C6orf25, C6orf47, C6orf48, CDSN, CLIC1, CSNK2B, DDAH2, DDX39B, HCG26, HCG27, HCP5, HLA-B, HSPA1A, HSPA1B, HSPA1L, LSM2, LST1, LTA, LTB, LY6G5B, LY6G5C, LY6G6C, LY6G6D, LY6G6E, LY6G6F, MCCD1, MICA, MICB, MIR4646, MIR6832, MIR6891, MSH5, MSH5-SAPCD1, NCR3, NEU1, NFKBIL1, POU5F1, PRRC2A, PSORS1C1, PSORS1C2, PSORS1C3, SAPCD1, SLC44A4, SNORA38, SNORD48, SNORD52, SNORD84, SNORD117, TCF19, TNF, VARS, VWA7, HLA-C, CCHCR1, GPANK1, ABHD16A	rs2855812-?	NR	2E-16				Affymetrix [up to 13554551] (imputed)	N
606	chr6_qbl_hap6	2766424	2766425	rs2855812	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma (childhood onset)	9,676 European ancestry cases, 347,481 European ancestry controls	NA	6p21.33	ABHD16A, AIF1, APOM, ATP6V1G2, ATP6V1G2-DDX39B, BAG6, C6orf15, C6orf25, C6orf47, C6orf48, CCHCR1, CDSN, CLIC1, CSNK2B, DDAH2, DDX39B, GPANK1, HCG26, HCG27, HCP5, HLA-B, HLA-C, HSPA1A, HSPA1B, HSPA1L, LSM2, LST1, LTA, LTB, LY6G5B, LY6G5C, LY6G6C, LY6G6D, LY6G6E, LY6G6F, MCCD1, MICA, MICB, MIR4646, MIR6832, MIR6891, MSH5, MSH5-SAPCD1, NCR3, NEU1, NFKBIL1, POU5F1, PRRC2A, PSORS1C1, PSORS1C2, PSORS1C3, SAPCD1, SLC44A4, SNORA38, SNORD48, SNORD52, SNORD84, SNORD117, TCF19, TNF, VARS, VWA7	rs2855812-?	NR	4E-7		0.118096	[0.071-0.165] unit decrease	Affymetrix [8274727] (imputed)	N
606	chr6_qbl_hap6	2766424	2766425	rs2855812	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs2855812-G	0.7990625	8E-9	(PDIA5, 5593_11_3)	0.1749456	[0.12-0.23] unit decrease	Illumina [> 1000000] (imputed)	N
606	chr6_qbl_hap6	2766424	2766425	rs2855812	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs2855812-G	0.7990625	8E-14	(C4A C4B, 4481_34_2)	0.23044567	[0.17-0.29] unit increase	Illumina [> 1000000] (imputed)	N
606	chr6_qbl_hap6	2766424	2766425	rs2855812	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs2855812-G	0.7990625	7E-11	(C2, 3186_2_2)	0.20260093	[0.14-0.26] unit decrease	Illumina [> 1000000] (imputed)	N
606	chr6_qbl_hap6	2766424	2766425	rs2855812	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs2855812-G	0.7990625	5E-9	(PILRA, 8683_119_3)	0.17610262	[0.12-0.24] unit decrease	Illumina [> 1000000] (imputed)	N
606	chr6_qbl_hap6	2766424	2766425	rs2855812	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs2855812-G	0.7990625	3E-25	(ISG15, 14148_2_3)	0.31585807	[0.26-0.37] unit decrease	Illumina [> 1000000] (imputed)	N
606	chr6_qbl_hap6	2766424	2766425	rs2855812	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs2855812-G	0.7990625	2E-9	(RACGAP1, 13587_10_3)	0.18150227	[0.12-0.24] unit decrease	Illumina [> 1000000] (imputed)	N
606	chr6_qbl_hap6	2766424	2766425	rs2855812	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs2855812-G	0.7990625	2E-25	(MICB, 9328_55_3)	0.31198063	[0.25-0.37] unit increase	Illumina [> 1000000] (imputed)	N
606	chr6_qbl_hap6	2766424	2766425	rs2855812	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs2855812-G	0.7990625	2E-19	(FTMT, 8048_9_3)	0.27116117	[0.21-0.33] unit increase	Illumina [> 1000000] (imputed)	N
606	chr6_qbl_hap6	2766424	2766425	rs2855812	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs2855812-G	0.7990625	2E-126	(MICB, 5102_55_3)	0.69572484	[0.64-0.75] unit increase	Illumina [> 1000000] (imputed)	N
606	chr6_qbl_hap6	2766424	2766425	rs2855812	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs2855812-G	0.7990625	1E-10	(CREB3L4, 11308_8_3)	0.18975821	[0.13-0.25] unit decrease	Illumina [> 1000000] (imputed)	N
606	chr6_qbl_hap6	2766424	2766425	rs2855812	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls, 2,149 African ancestry cases, 6,055 African ancestry controls, 1,239 Japanese ancestry cases, 3,976 Japanese ancestry controls, 606 Latino cases, 792 Latino controls	NA	6p21.33	MICB, HCP5, MCCD1	rs2855812-T	0.23	9E-12		1.1	[1.07-1.13]	Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
606	chr6_qbl_hap6	2766424	2766425	rs2855812	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls	NA	6p21.33	MICB, MICA, MCCD1	rs2855812-T	0.23	3E-10		0.09	[0.07-0.11] unit increase	Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
606	chr6_qbl_hap6	2766424	2766425	rs2855812	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p21.33	NR	rs2855812-?	NR	1E-16		0.213	[0.16-0.26] unit increase	Illumina [at least 560000] (imputed)	N
606	chr6_qbl_hap6	2766424	2766425	rs2855812	28235828	Traglia M	2017-04-03	G3 (Bethesda)	Independent Maternal and Fetal Genetic Effects on Midgestational Circulating Levels of Environmental Pollutants.	Midgestational circulating levels of PBDEs	329 Hispanic mothers, 273 European ancestry mothers, 122 Asian ancestry mothers, 23 South Asian ancestry mothers, 21 African American mothers, 22 other ancestry mothers	NA	6p21.33	MICB	rs2855812-?		8E-7	(BDE-47)	0.33	[0.19-0.47] unit decrease	Affymetrix [629686]	N
606	chr6_qbl_hap6	2766424	2766425	rs2855812	28235828	Traglia M	2017-04-03	G3 (Bethesda)	Independent Maternal and Fetal Genetic Effects on Midgestational Circulating Levels of Environmental Pollutants.	Midgestational circulating levels of PBDEs	329 Hispanic mothers, 273 European ancestry mothers, 122 Asian ancestry mothers, 23 South Asian ancestry mothers, 21 African American mothers, 22 other ancestry mothers	NA	6p21.33	MICB	rs2855812-?		3E-7	(BDE-100)	0.35	[0.21-0.49] unit decrease	Affymetrix [629686]	N
606	chr6_qbl_hap6	2766424	2766425	rs2855812	28235828	Traglia M	2017-04-03	G3 (Bethesda)	Independent Maternal and Fetal Genetic Effects on Midgestational Circulating Levels of Environmental Pollutants.	Midgestational circulating levels of PBDEs	329 Hispanic mothers, 273 European ancestry mothers, 122 Asian ancestry mothers, 23 South Asian ancestry mothers, 21 African American mothers, 22 other ancestry mothers	NA	6p21.33	MICB	rs2855812-?		2E-6	(Sum PBDE)	0.29	[0.17-0.41] unit decrease	Affymetrix [629686]	N
606	chr6_qbl_hap6	2766424	2766425	rs2855812	21946350	Soler Artigas M	2011-09-25	Nat Genet	Genome-wide association and large-scale follow up identifies 16 new loci influencing lung function.	Pulmonary function	48,201 European ancestry individuals	46,411 European ancestry individuals	6p21.33	MICB	rs2855812-T	NR	2E-7	(FEV1)	0.03	[0.018-0.042] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
606	chr6_qbl_hap6	2767661	2767662	rs3134900	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MICB	5,365 Icelandic ancestry individuals	NA	6p21.33		rs3134900-G	0.08239	7E-220		1.01394	[0.95-1.08] unit decrease	Illumina [7506463] (imputed)	N
606	chr6_qbl_hap6	2767661	2767662	rs3134900	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	MICB	rs3134900-G	0.14	3E-101	(MHC class I polypeptide-related sequence B, MICB.5102.55.3)	0.71	[0.65-0.77] unit decrease	Affymetrix [10572788] (imputed)	N
606	chr6_qbl_hap6	2768524	2768525	rs41293883	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Eczema	7,884 European ancestry cases, 239,773 European ancestry controls	21,000 cases, 96,000 controls	6p21.33	HLA-DQB1	rs41293883-?	0.95847	2E-14		1.4541224	[1.33-1.6]	Affymetrix [15688218] (imputed)	N
606	chr6_qbl_hap6	2768760	2768761	rs41273040	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	6p21.33	MICB	rs41273040-G	0.976386	4E-18		0.0571663	[0.044-0.07] unit decrease	Affymetrix [NR] (imputed)	N
606	chr6_qbl_hap6	2768760	2768761	rs41273040	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.33	NR	rs41273040-?	NR	6E-9				Affymetrix [~ 8270000] (imputed)	N
606	chr6_qbl_hap6	2768831	2768832	rs3131638	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	6p21.33	NR	rs3131638-G	0.7739	8E-10		1.0449321	[1.03-1.06]	Affymetrix, Illumina [NR] (imputed)	N
606	chr6_qbl_hap6	2769190	2769191	rs3132468	22001756	Khor CC	2011-10-16	Nat Genet	Genome-wide association study identifies susceptibility loci for dengue shock syndrome at MICB and PLCE1.	Dengue shock syndrome	2,008 Vietnamese ancestry child cases, 2,018 Vietnamese ancestry child controls	1,737 Vietnamese ancestry child cases, 2,934 Vietnamese ancestry child controls	6p21.33	MICB	rs3132468-?	0.13	4E-11		1.34	[1.23-1.46]	Illumina [481342]	N
606	chr6_qbl_hap6	2769359	2769360	rs9380260	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MICB	rs9380260-A	NR	1E-12		0.0271773	[0.02-0.035] unit decrease	Affymetrix [323123] (imputed)	N
606	chr6_qbl_hap6	2770001	2770002	rs62395355	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.33		rs62395355-C	0.821	9E-12				Affymetrix [10369434] (imputed)	N
606	chr6_qbl_hap6	2770001	2770002	rs62395355	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MICB	rs62395355-A	NR	4E-12		0.0253688	[0.018-0.033] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_qbl_hap6	2770001	2770002	rs62395355	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	MICB	rs62395355-A	NR	8E-12		0.0250776	[0.018-0.032] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_qbl_hap6	2770001	2770002	rs62395355	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	MICB	rs62395355-A	NR	3E-10		0.0233476	[0.016-0.031] unit increase	Affymetrix [321169] (imputed)	N
606	chr6_qbl_hap6	2770162	2770163	rs3130614	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	6p21.33	NR	rs3130614-A	0.119161214504899	1E-11		0.013812465	[0.0098-0.0178] unit decrease	NR [NR]	N
606	chr6_qbl_hap6	2770162	2770163	rs3130614	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	6p21.33	NR	rs3130614-A	0.119161214504899	9E-11		0.017454144	[0.012-0.023] unit decrease	NR [NR]	N
606	chr6_qbl_hap6	2770162	2770163	rs3130614	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	6p21.33	NR	rs3130614-A	0.119161214504899	1E-10		0.014875911	[0.01-0.019] unit decrease	NR [NR]	N
606	chr6_qbl_hap6	2770162	2770163	rs3130614	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	6p21.33	NR	rs3130614-A	0.119161214504899	1E-11		0.011892368	[0.0085-0.0153] unit decrease	NR [NR]	N
606	chr6_qbl_hap6	2770162	2770163	rs3130614	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	6p21.33	MICB	rs3130614-T	NR	3E-10		0.19759	[0.14-0.26] unit increase	Illumina [at least 950000] (imputed)	N
606	chr6_qbl_hap6	2770162	2770163	rs3130614	26291516	Miller FW	2015-08-20	Genes Immun	Genome-wide association study identifies HLA 8.1 ancestral haplotype alleles as major genetic risk factors for myositis phenotypes.	Myositis	1,710 European ancestry cases, 4,724 European ancestry controls	NA	6p21.33	MICB	rs3130614-A	NR	4E-48		2.31	[NR]	Illumina [NR] (imputed)	N
606	chr6_qbl_hap6	2770558	2770559	rs2844498	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MICB	rs2844498-T	NR	7E-13		0.0226459	[0.016-0.029] unit increase	Affymetrix [323858] (imputed)	N
606	chr6_qbl_hap6	2770558	2770559	rs2844498	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	MICB	rs2844498-T	NR	8E-12		0.0215973	[0.015-0.028] unit increase	Affymetrix [127266] (imputed)	N
606	chr6_qbl_hap6	2772647	2772648	rs9267431	33692975	Buda P	2021-02-22	Front Pediatr	Association Between rs12037447, rs146732504, rs151078858, rs55723436, and rs6094136 Polymorphisms and Kawasaki Disease in the Population of Polish Children.	Kawasaki disease	119 European ancestry cases, 6,071 European ancestry controls	NA	6p21.33	MICB	rs9267431-A	0.1194	2E-6		2.113	1.547-2.886	Illumina [164395]	N
606	chr6_qbl_hap6	2772682	2772683	rs2246618	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MICB	rs2246618-T	NR	2E-11		0.0226591	[0.016-0.029] unit decrease	Affymetrix [323858] (imputed)	N
606	chr6_qbl_hap6	2772682	2772683	rs2246618	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume (adjusted for hypertension)	46,055 European ancestry individuals, 2,469 African American individuals	NA	6p21.33	MICB	rs2246618-C	0.3118	7E-6		0.0286	[0.016-0.041] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
606	chr6_qbl_hap6	2772682	2772683	rs2246618	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume (adjusted for hypertension)	46,055 European ancestry individuals	NA	6p21.33	MICB	rs2246618-C	0.3118	4E-6		0.029	[0.017-0.041] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
606	chr6_qbl_hap6	2772682	2772683	rs2246618	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	48,454 European ancestry individuals	NA	6p21.33	MICB	rs2246618-C	0.3118	7E-7		0.0307	[0.019-0.043] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
606	chr6_qbl_hap6	2772682	2772683	rs2246618	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	2,516 African American individuals, 48,454 European ancestry individuals	NA	6p21.33	MICB	rs2246618-C	0.3118	2E-6		0.03	[0.018-0.042] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
606	chr6_qbl_hap6	2773341	2773342	rs3132463	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MICB	rs3132463-T	NR	5E-9		0.0213533	[0.014-0.028] unit increase	Affymetrix [323123] (imputed)	N
606	chr6_qbl_hap6	2774365	2774366	rs3132461	28806749	Leo PJ	2017-08-14	PLoS Genet	Defining the genetic susceptibility to cervical neoplasia-A genome-wide association study.	Cervical cancer	2,866 European ancestry cases, 6,481 European ancestry controls	NA	6p21.33	MICB, MCCD1	rs3132461-G	NR	2E-13		1.358	[NR]	Illumina [10863230] (imputed)	N
606	chr6_qbl_hap6	2774789	2774790	rs3132459	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MICB	rs3132459-C	NR	4E-8		0.0179194	[0.012-0.024] unit increase	Affymetrix [321016] (imputed)	N
606	chr6_qbl_hap6	2774967	2774967	rs5875324	30787463	Escala-Garcia M	2019-02-21	Br J Cancer	Genome-wide association study of germline variants and breast cancer-specific mortality.	Breast cancer specific mortality in breast cancer	7,697 European ancestry cases, 88,964 European ancestry controls	NA	6p21.33	NR	rs5875324-?	NR	2E-6		0.8744475	[0.83-0.92]	Affymetrix, Illumina [~ 10400000] (imputed)	N
606	chr6_qbl_hap6	2774996	2774997	rs2516399	21738478	Okada Y	2011-06-30	PLoS Genet	Identification of nine novel loci associated with white blood cell subtypes in a Japanese population.	White blood cell types	8,794 Japanese ancestry individuals	5,998 Japanese ancestry individuals	6p21.33	MHC	rs2516399-A	0.81	2E-12	(eosinophil count)	0.105	[0.08-0.14] unit increase	Illumina [2178645] (imputed)	N
606	chr6_qbl_hap6	2776838	2776839	rs2844495	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG16N22.5	rs2844495-G	NR	2E-18		0.0261655	[0.02-0.032] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_qbl_hap6	2776838	2776839	rs2844495	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG16N22.5	rs2844495-G	NR	2E-18		0.0261197	[0.02-0.032] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_qbl_hap6	2776838	2776839	rs2844495	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG16N22.5	rs2844495-G	NR	1E-10		0.0210221	[0.015-0.027] unit decrease	Affymetrix [323123] (imputed)	N
606	chr6_qbl_hap6	2776838	2776839	rs2844495	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG16N22.5	rs2844495-G	NR	3E-16		0.024738	[0.019-0.031] unit increase	Affymetrix [321169] (imputed)	N
606	chr6_qbl_hap6	2776908	2776909	rs62397979	31320639	Hillary RF	2019-07-18	Nat Commun	Genome and epigenome wide studies of neurological protein biomarkers in the Lothian Birth Cohort 1936.	Neurological blood protein biomarker levels	750 European ancestry individuals	NA	6p21.33	XXbac-BPG16N22.5	rs62397979-G	0.0469	1E-26	(Alpha-2-MRAP)	1.36939	[1.12-1.62] unit increase	Illumina [8683751] (imputed)	N
606	chr6_qbl_hap6	2777402	2777403	rs17200698	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	Y_RNA, MICB, PPIAP9, XXbac-BPG16N22.5, RPL15P4, MCCD1, ATP6V1G2, ATP6V1G2-DDX39B, NFKBIL1, LST1, NCR3	rs17200698-T	0.0361809	1E-11	(EA, MHC class I polypeptide-related sequence A)	0.813	[0.58-1.04] unit increase	Affymetrix [509946]	N
606	chr6_qbl_hap6	2778219	2778220	rs2395045	28031287	Sasayama D	2016-11-26	Hum Mol Genet	Genome-wide quantitative trait loci mapping of the human cerebrospinal fluid proteome.	Cerebrospinal fluid biomarker levels	133 Japanese ancestry individuals.	NA	6p21.33	NR	rs2395045-?	NR	6E-9	(MHC class I polypeptide-related sequence B)			Illumina [514227]	N
606	chr6_qbl_hap6	2778385	2778386	rs3131631	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cervical cancer	6,563 European ancestry cases, 410,350 European ancestry controls	NA	6p21.33		rs3131631-G	NR	5E-10		1.1332	NR	Affymetrix [7846216] (imputed)	N
606	chr6_qbl_hap6	2778796	2778797	rs2516491	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG16N22.5	rs2516491-C	NR	1E-8		0.0197328	[0.013-0.027] unit decrease	Affymetrix [323858] (imputed)	N
606	chr6_qbl_hap6	2779049	2779050	rs3131630	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG16N22.5	rs3131630-G	NR	1E-9		0.0197999	[0.013-0.026] unit decrease	Affymetrix [319769] (imputed)	N
606	chr6_qbl_hap6	2779049	2779050	rs3131630	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG16N22.5	rs3131630-G	NR	3E-9		0.019409	[0.013-0.026] unit decrease	Affymetrix [319769] (imputed)	N
606	chr6_qbl_hap6	2780099	2780100	rs149066340	30111768	Yao C	2018-08-15	Nat Commun	Genome-wide mapping of plasma protein QTLs identifies putatively causal genes and pathways for cardiovascular disease.	Blood protein levels	6861 European ancestry individuals	4298 European ancestry individuals	6p21.33		rs149066340-C	0.979	1E-36	(C2)	0.92	unit increase	Affymetrix, Illumina [8509364] (imputed)	N
606	chr6_qbl_hap6	2781148	2781149	rs34451538	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs34451538-G	0.971	6E-20				Affymetrix [10369434] (imputed)	N
606	chr6_qbl_hap6	2781148	2781149	rs34451538	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.33	PPIAP9	rs34451538-A	0.028767	2E-9		0.044486254	[0.03-0.059] unit decrease	Affymetrix [93095623] (imputed)	N
606	chr6_qbl_hap6	2781648	2781649	rs3132455	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large HDL	115,082 European ancestry individuals	NA	6p21.33		rs3132455-G	0.653225	3E-10		0.0260764	[0.018-0.034] unit increase	NR [11722792] (imputed)	N
606	chr6_qbl_hap6	2783339	2783340	rs3132454	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PPIAP9	rs3132454-G	NR	2E-8		0.0168062	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_qbl_hap6	2783339	2783340	rs3132454	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PPIAP9	rs3132454-G	NR	4E-12		0.0205728	[0.015-0.026] unit decrease	Affymetrix [321016] (imputed)	N
606	chr6_qbl_hap6	2783339	2783340	rs3132454	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	PPIAP9	rs3132454-G	NR	2E-8		0.0183183	[0.012-0.025] unit decrease	Affymetrix [323123] (imputed)	N
606	chr6_qbl_hap6	2784826	2784827	rs3093992	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	PPIAP9	rs3093992-C	NR	3E-8		0.0191109	[0.012-0.026] unit increase	Affymetrix [323123] (imputed)	N
606	chr6_qbl_hap6	2785711	2785712	rs114060326	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)(bidirectional)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.33		rs114060326-G	NR	3E-10				Affymetrix [7846216] (imputed)	N
606	chr6_qbl_hap6	2786148	2786149	rs3093988	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	RPL15P4	rs3093988-A	NR	8E-12		0.0266126	[0.019-0.034] unit increase	Affymetrix [323123] (imputed)	N
606	chr6_qbl_hap6	2786148	2786149	rs3093988	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	316,772 European ancestry male individuals	NA	6p21.33	NR	rs3093988-A	0.1856	8E-20		0.0203	[0.016-0.025] unit decrease	NR [~ 27400000] (imputed)	N
606	chr6_qbl_hap6	2789303	2789304	rs2734580	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	RPL15P4	rs2734580-T	NR	8E-16		0.0360498	[0.027-0.045] unit decrease	Affymetrix [323123] (imputed)	N
606	chr6_qbl_hap6	2790249	2790250	rs2516482	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.33	MCCD1	rs2516482-G	0.195446	1E-15		0.038059197	[0.029-0.047] unit increase	Affymetrix [93095623] (imputed)	N
606	chr6_qbl_hap6	2790605	2790606	rs3093983	33649182	Penova M	2021-03-01	Proc Natl Acad Sci U S A	Genome wide association study of HTLV-1-associated myelopathy/tropical spastic paraparesis in the Japanese population.	HTLV-1 associated myelopathy	731 Japanese ancestry cases, 846 Japanese ancestry controls	NA	6p21.33		rs3093983-G	0.08	4E-7		1.86	[1.47-2.37]	Illumina [126394]	N
606	chr6_qbl_hap6	2793282	2793283	rs3853601	22197932	Paternoster L	2011-12-25	Nat Genet	Meta-analysis of genome-wide association studies identifies three new risk loci for atopic dermatitis.	Atopic dermatitis	5,606 European ancestry cases, 20,565 European ancestry controls	5,419 European ancestry cases, 19,833 European ancestry controls	6p21.33	BAT1	rs3853601-G	0.12	2E-6		1.13	[1.08-1.19]	Affymetrix, Illumina [~ 2500000] (imputed)	N
606	chr6_qbl_hap6	2797873	2797874	rs114751021	33841421	Li J	2021-03-25	Front Immunol	Variants at the MHC Region Associate With Susceptibility to <i>Clostridioides difficile</i> Infection: A Genome-Wide Association Study Using Comprehensive Electronic Health Records.	Clostridioides difficle infection in antibiotics-users	587 European ancestry cases, 3,166 European ancestry controls	NA	6p21.33	SNORD117	rs114751021-G	0.024	5E-8		2.41	[1.84-3.09]	Illumina [64973696] (imputed)	N
606	chr6_qbl_hap6	2799157	2799158	rs2734583	21912425	Tohkin M	2011-09-13	Pharmacogenomics J	A whole-genome association study of major determinants for allopurinol-related Stevens-Johnson syndrome and toxic epidermal necrolysis in Japanese patients.	Stevens-Johnson syndrome and toxic epidermal necrolysis (SJS-TEN)	14 Japanese ancestry cases, 991 Japanese ancestry controls	NA	6p21.33	PSORS1C1, PSORS1C3, BAT1, HLA-C, MICC, PPIAP9, POLR2LP, CCHCR1, TCF19, HLA-B*5801, HCP5, POU5F1	rs2734583-?	0.0055	2E-8		66.8	[19.8-225.0]	Illumina [890321]	N
606	chr6_qbl_hap6	2799467	2799468	rs9267485	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	6p21.33	DDX39B	rs9267485-G	NR	2E-17		0.0531442	[0.041-0.065] unit decrease	Illumina [13520550] (imputed)	N
606	chr6_qbl_hap6	2800368	2800369	rs2071596	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	6p21.33	DDX39B	rs2071596-A	0.163229	1E-42		0.04289182	[0.037-0.049] unit increase	Affymetrix [93095623] (imputed)	N
606	chr6_qbl_hap6	2800368	2800369	rs2071596	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6p21.33	DDX39B	rs2071596-A	0.163228	9E-50		0.046432465	[0.04-0.053] unit increase	Affymetrix [93095623] (imputed)	N
606	chr6_qbl_hap6	2800368	2800369	rs2071596	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6p21.33	DDX39B	rs2071596-A	0.163185	2E-27		0.03458288	[0.028-0.041] unit decrease	Affymetrix [93095623] (imputed)	N
606	chr6_qbl_hap6	2800368	2800369	rs2071596	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6p21.33	DDX39B	rs2071596-A	0.163195	5E-24		0.030947343	[0.025-0.037] unit increase	Affymetrix [93095623] (imputed)	N
606	chr6_qbl_hap6	2801613	2801614	rs2269476	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	6p21.33	DDX39B, ATP6V1G2-DDX39B	rs2269476-A	0.179	2E-24		0.04806173	[0.039-0.057] unit increase	Affymetrix [~ 2500000] (imputed)	N
606	chr6_qbl_hap6	2804598	2804599	rs2844509	35023831	Chong M	2022-01-13	Elife	GWAS and ExWAS of blood Mitochondrial DNA copy number identifies 71 loci and highlights a potential causal role in dementia.	Mitochondrial DNA copy number	395,718 British, Irish, Other White, South Asian, African ancestry individuals	NA	6p21.33	NR	rs2844509-G	0.242812	3E-8		0.014	[0.0091-0.0189] unit increase	Affymetrix [23037915] (imputed)	N
606	chr6_qbl_hap6	2807076	2807077	rs2239705	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	6p21.33	NR	rs2239705-?		8E-9	(MICA)			Illumina [NR]	N
606	chr6_qbl_hap6	2807917	2807918	rs9267488	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p21.33	NR	rs9267488-?	NR	3E-6		4.68	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
606	chr6_qbl_hap6	2807917	2807918	rs9267488	26291516	Miller FW	2015-08-20	Genes Immun	Genome-wide association study identifies HLA 8.1 ancestral haplotype alleles as major genetic risk factors for myositis phenotypes.	Myositis	1,710 European ancestry cases, 4,724 European ancestry controls	NA	6p21.33	ATP6V1G2, DDX39B	rs9267488-G	NR	6E-49		2.32	[NR]	Illumina [NR] (imputed)	N
606	chr6_qbl_hap6	2808118	2808119	rs34568880	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	6p21.33	ATP6V1G2	rs34568880-C	0.986687	6E-10		0.0562557	[0.038-0.074] unit decrease	Affymetrix [NR] (imputed)	N
606	chr6_qbl_hap6	2809432	2809433	rs2239708	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	6p21.33	ATP6V1G2, NFKBIL1	rs2239708-T	0.033249	2E-12		0.04410994	[0.032-0.056] unit increase	Affymetrix [93095623] (imputed)	N
606	chr6_qbl_hap6	2809468	2809469	rs2071591	26562150	Seldin MF	2015-10-10	Mol Med	Genome-wide Association Study of Late-Onset Myasthenia Gravis: Confirmation of TNFRSF11A, and Identification of ZBTB10 and Three Distinct HLA Associations.	Late-onset myasthenia gravis	532 European ancestry cases, 2,128 European ancestry controls	NA	6p21.33	MHC_Class III	rs2071591-?	NR	4E-12				Illumina [6175472] (imputed)	N
606	chr6_qbl_hap6	2811572	2811573	rs2523501	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (multivariate analysis)	477,968 European ancestry individuals	NA	6p21.33	NFKBIL1	rs2523501-C	0.152	8E-10		0.036	[0.024-0.048] unit decrease	NR [NR] (imputed)	N
606	chr6_qbl_hap6	2813322	2813323	rs2516383	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	NFKBIL1	rs2516383-C	NR	3E-9		0.0206882	[0.014-0.027] unit increase	Affymetrix [323123] (imputed)	N
606	chr6_qbl_hap6	2814090	2814091	rs6916921	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	LST1, NCR3, ATP6V1G2, TNF, NFKBIL1, LTA, LTB	rs6916921-T	0.1330321	2E-23	(Natural cytotoxicity triggering receptor 3)	0.6188	[0.5-0.74] unit decrease	Affymetrix [509946]	N
606	chr6_qbl_hap6	2814321	2814322	rs34492353	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.33	NR	rs34492353-?	NR	1E-13				Affymetrix [~ 8270000] (imputed)	N
606	chr6_qbl_hap6	2814321	2814322	rs34492353	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.33	NR	rs34492353-?	NR	6E-12				Affymetrix [~ 8270000] (imputed)	N
606	chr6_qbl_hap6	2815259	2815260	rs34268928	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	6p21.33	NFKBIL1	rs34268928-T	0.02077	2E-9		0.04651516	[0.031-0.062] unit decrease	Affymetrix [93095623] (imputed)	N
606	chr6_qbl_hap6	2816332	2816333	rs6929796	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	6p21.33	NFKBIL1	rs6929796-A	0.172	3E-8		0.0092	[0.0059-0.0125] unit decrease	Affymetrix, Illumina [33811881] (imputed)	N
606	chr6_qbl_hap6	2816332	2816333	rs6929796	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	6p21.33	NFKBIL1	rs6929796-A	0.163327	3E-33		0.036523763	[0.031-0.042] unit increase	Affymetrix [93095623] (imputed)	N
606	chr6_qbl_hap6	2816332	2816333	rs6929796	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6p21.33	NFKBIL1	rs6929796-A	0.163358	2E-18		0.030205907	[0.023-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
606	chr6_qbl_hap6	2816332	2816333	rs6929796	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	6p21.33	NFKBIL1	rs6929796-A	0.1634	8E-16		0.03895272	[0.029-0.048] unit increase	Affymetrix [~ 2500000] (imputed)	N
606	chr6_qbl_hap6	2816332	2816333	rs6929796	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	6p21.33	NFKBIL1	rs6929796-A	0.1635	5E-17		0.04056459	[0.031-0.05] unit increase	Affymetrix [~ 2500000] (imputed)	N
606	chr6_qbl_hap6	2816332	2816333	rs6929796	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	6p21.33	NFKBIL1	rs6929796-A	0.1635	7E-11		0.03154443	[0.022-0.041] unit increase	Affymetrix [~ 2500000] (imputed)	N
606	chr6_qbl_hap6	2816332	2816333	rs6929796	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	6p21.33	NFKBIL1	rs6929796-A	0.1635	7E-12		0.03316401	[0.024-0.043] unit increase	Affymetrix [~ 2500000] (imputed)	N
606	chr6_qbl_hap6	2817333	2817334	rs35597084	32592749	Butler-Laporte G	2020-06-24	Clin Microbiol Infect	Elevated body-mass index is associated with an increased risk of infectious disease admissions and mortality: a mendelian randomization study.	Sepsis (90-day mortality)	341 European ancestry cases, 1,696 European ancestry controls	NA	6p21.33	NFKBIL1	rs35597084-C	0.96	4E-8		0.17	[0.11-0.23] unit decrease	NR [NR]	N
606	chr6_qbl_hap6	2818514	2818515	rs2857605	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	6p21.33	NFKBIL1	rs2857605-C	0.21061104132454	6E-14		0.0672	[0.05-0.085] unit decrease	NR [5035015] (imputed)	N
606	chr6_qbl_hap6	2819110	2819111	rs2230365	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.33		rs2230365-C	0.859	7E-16				Affymetrix [10369434] (imputed)	N
606	chr6_qbl_hap6	2819110	2819111	rs2230365	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	NFKBIL1	rs2230365-T	NR	1E-12		0.0288606	[0.021-0.037] unit decrease	Affymetrix [321016] (imputed)	N
606	chr6_qbl_hap6	2819110	2819111	rs2230365	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	NFKBIL1	rs2230365-T	NR	1E-11		0.0299572	[0.021-0.039] unit decrease	Affymetrix [323123] (imputed)	N
606	chr6_qbl_hap6	2819110	2819111	rs2230365	26414677	Day FR	2015-11-01	Nat Genet	Large-scale genomic analyses link reproductive aging to hypothalamic signaling, breast cancer susceptibility and BRCA1-mediated DNA repair.	Menopause (age at onset)	up to 69,626 European ancestry women	NA	6p21.33	MSH5, HLA	rs2230365-C	0.84	8E-10		0.17	[0.11-0.23] years decrease	Affymetrix, Illumina [~ 2600000] (imputed)	N
606	chr6_qbl_hap6	2821792	2821793	rs4947324	33235445	Lee YJ	2020-11-17	Int J Chron Obstruct Pulmon Dis	A Genome-Wide Association Study in Early COPD: Identification of One Major Susceptibility Loci.	Early chronic obstructive pulmonary disease in never smokers	38 Korean ancestry cases, 1,778 Korean ancestry controls	NA	6p21.33	NFKBIL1	rs4947324-?	NR	8E-6	(PS matching analysis)	4.16	NR	Affymetrix [345072]	N
606	chr6_qbl_hap6	2822996	2822997	rs2516392	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.33		rs2516392-G	0.6215470000000001	7E-47		1.0639546	[1.05-1.08]	Affymetrix, Illumina [9851866] (imputed)	N
606	chr6_qbl_hap6	2824333	2824334	rs138885312	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs138885312-?		2E-8		1.8	[1.47-2.20]	Illumina [7645193] (imputed)	N
606	chr6_qbl_hap6	2824470	2824471	rs28732143	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs28732143-A	0.041	1E-64	(MHC class I polypeptide-related sequence B, MICB.5102.55.3)	1.02	[0.9-1.14] unit increase	Affymetrix [10572788] (imputed)	N
606	chr6_qbl_hap6	2826473	2826474	rs2857709	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	NFKBIL1	rs2857709-A	NR	5E-10		0.0243153	[0.017-0.032] unit decrease	Affymetrix [319769] (imputed)	N
606	chr6_qbl_hap6	2826473	2826474	rs2857709	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	NFKBIL1	rs2857709-A	NR	1E-9		0.0236953	[0.016-0.031] unit decrease	Affymetrix [319769] (imputed)	N
606	chr6_qbl_hap6	2827037	2827038	rs2857602	33106546	Johnson TA	2020-10-26	J Hum Genet	Association of an IGHV3-66 gene variant with Kawasaki disease.	Kawasaki disease	1,276 East Asian ancestry cases, 5,086 East Asian ancestry controls	2,152 East Asian ancestry cases, 2,751 East Asian ancestry controls	6p21.33	LTA	rs2857602-A	NR	3E-15		0.78	[0.73-0.83]	Affymetrix, Illumina [6265045] (imputed)	N
606	chr6_qbl_hap6	2827037	2827038	rs2857602	32805626	Yuan S	2020-08-14	EBioMedicine	Effects of tumour necrosis factor on cardiovascular disease and cancer: A two-sample Mendelian randomization study.	Tumor necrosis factor levels	30,912 European ancestry individuals	NA	6p21.33	LTA	rs2857602-G	0.38	3E-12		0.032	[0.02-0.044] unit increase	NR [NR]	N
606	chr6_qbl_hap6	2828790	2828791	rs190775951	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs190775951-A	0.017	8E-16	(MHC class I polypeptide-related sequence B, MICB.5102.55.3)	0.86	[0.64-1.08] unit increase	Affymetrix [10572788] (imputed)	N
606	chr6_qbl_hap6	2831913	2831914	rs3093539	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	6p21.33	ABHD16A, AIF1, APOM, ATP6V1G2, ATP6V1G2-DDX39B, BAG6, C2, C4A, C4B, C4B_2, C6orf25, C6orf47, C6orf48, CFB, CLIC1, CSNK2B, CYP21A1P, CYP21A2, DDAH2, DDX39B, DXO, EHMT2, GPANK1, HSPA1A, HSPA1B, HSPA1L, LOC102060414, LSM2, LST1, LTA, LTB, LY6G5B, LY6G5C, LY6G6C, LY6G6D, LY6G6E, LY6G6F, MCCD1, MICB, MIR1236, MIR4646, MIR6832, MSH5, MSH5-SAPCD1, NCR3, NELFE, NEU1, NFKBIL1, PRRC2A, SAPCD1, SKIV2L, SLC44A4, SNORA38, SNORD48, SNORD52, SNORD84, SNORD117, STK19, TNF, TNXA, TNXB, VARS, VWA7, ZBTB12	rs3093539-G	0.9841	1E-9		1.189845	[1.14-1.24]	Affymetrix [8274727] (imputed)	N
606	chr6_qbl_hap6	2832132	2832134	rs736160	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	LTA	rs736160-A	NR	1E-13		0.0220518	[0.016-0.028] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_qbl_hap6	2832132	2832134	rs736160	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	LTA	rs736160-A	NR	1E-12		0.0211835	[0.015-0.027] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_qbl_hap6	2832132	2832134	rs736160	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	LTA	rs736160-A	NR	7E-14		0.0222905	[0.016-0.028] unit decrease	Affymetrix [321016] (imputed)	N
606	chr6_qbl_hap6	2832132	2832134	rs736160	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	LTA	rs736160-A	NR	1E-21		0.0310209	[0.025-0.037] unit decrease	Affymetrix [323123] (imputed)	N
606	chr6_qbl_hap6	2832132	2832134	rs736160	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	LTA	rs736160-A	NR	3E-11		0.0199683	[0.014-0.026] unit increase	Affymetrix [321169] (imputed)	N
606	chr6_qbl_hap6	2833402	2833403	rs2844482	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	6p21.33	ABHD16A, AIF1, APOM, ATP6V1G2, ATP6V1G2-DDX39B, BAG6, C6orf25, C6orf47, CSNK2B, DDAH2, DDX39B, GPANK1, LST1, LTA, LTB, LY6G5B, LY6G5C, LY6G6C, LY6G6D, LY6G6E, LY6G6F, MCCD1, MICB, MIR4646, MIR6832, NCR3, NFKBIL1, PRRC2A, SNORA38, SNORD84, SNORD117, TNF	rs2844482-T	0.152664	1E-9		1.0639137	[1.04-1.08]	Affymetrix [8274727] (imputed)	N
606	chr6_qbl_hap6	2833402	2833403	rs2844482	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Perceived unattractiveness to mosquitoes	16,576 European ancestry individuals	NA	6p21.33	intergenic	rs2844482-T	NR	8E-6		0.145906	[0.082-0.21] unit decrease	Illumina [7433384] (imputed)	N
606	chr6_qbl_hap6	2833403	2833404	rs2071590	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	6p21.33	NR	rs2071590-A	0.363817	4E-9		0.042927716	[0.029-0.057] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
606	chr6_qbl_hap6	2833403	2833404	rs2071590	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	6p21.33	Intergenic	rs2071590-A	0.378	1E-8		0.0133	[0.0088-0.0178] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
606	chr6_qbl_hap6	2833776	2833777	rs2239704	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	6p21.33	LTA	rs2239704-A	0.385621	2E-12		0.01774556	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
606	chr6_qbl_hap6	2833776	2833777	rs2239704	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	6p21.33	NR	rs2239704-A	0.384392	1E-14		0.0163675	[0.012-0.021] unit decrease	NR [NR]	N
606	chr6_qbl_hap6	2833776	2833777	rs2239704	28806749	Leo PJ	2017-08-14	PLoS Genet	Defining the genetic susceptibility to cervical neoplasia-A genome-wide association study.	Cervical cancer	2,866 European ancestry cases, 6,481 European ancestry controls	NA	6p21.33	TNF	rs2239704-A	NR	6E-9		1.23	[NR]	Illumina [10863230] (imputed)	N
606	chr6_qbl_hap6	2834193	2834194	rs2229094	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.33		rs2229094-T	0.746	4E-60				Affymetrix [10369434] (imputed)	N
606	chr6_qbl_hap6	2834193	2834194	rs2229094	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	6p21.33		rs2229094-T	0.746	9E-34				Affymetrix [10369434] (imputed)	N
606	chr6_qbl_hap6	2834193	2834194	rs2229094	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.33		rs2229094-T	0.746	3E-36				Affymetrix [10369434] (imputed)	N
606	chr6_qbl_hap6	2834193	2834194	rs2229094	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	6p21.33		rs2229094-T	0.746	2E-47				Affymetrix [10369434] (imputed)	N
606	chr6_qbl_hap6	2834193	2834194	rs2229094	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs2229094-T	0.746	6E-107				Affymetrix [10369434] (imputed)	N
606	chr6_qbl_hap6	2834193	2834194	rs2229094	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p21.33		rs2229094-T	0.746	4E-37				Affymetrix [10369434] (imputed)	N
606	chr6_qbl_hap6	2834193	2834194	rs2229094	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	6p21.33	LTA	rs2229094-C	0.254265	6E-29		0.029798461	[0.025-0.035] unit increase	Affymetrix [93095623] (imputed)	N
606	chr6_qbl_hap6	2834193	2834194	rs2229094	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.33	LTA	rs2229094-C	0.254251	7E-45		0.040826518	[0.035-0.047] unit increase	Affymetrix [93095623] (imputed)	N
606	chr6_qbl_hap6	2834193	2834194	rs2229094	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.33	NR	rs2229094-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
606	chr6_qbl_hap6	2834193	2834194	rs2229094	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	White blood cell count	8,825 African American individuals, 18,251 Hispanic/Latino individuals, 543 Asian ancestry individuals, 606 Native American ancestry individuals, 383 individuals	NA	6p21.33	NR	rs2229094-?	NR	4E-6		0.01256537	[0.0072-0.0179] unit increase	Illumina [30613845] (imputed)	N
606	chr6_qbl_hap6	2834193	2834194	rs2229094	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	6p21.33	LTA	rs2229094-C	0.2537	8E-43		0.0564668	[0.048-0.065] unit increase	Affymetrix [~ 2500000] (imputed)	N
606	chr6_qbl_hap6	2834193	2834194	rs2229094	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	6p21.33	LTA	rs2229094-C	0.2536	4E-15		0.03213321	[0.024-0.04] unit increase	Affymetrix [~ 2500000] (imputed)	N
606	chr6_qbl_hap6	2834193	2834194	rs2229094	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	6p21.33	LTA	rs2229094-C	0.2535	6E-72		0.07418746	[0.066-0.082] unit increase	Affymetrix [~ 2500000] (imputed)	N
606	chr6_qbl_hap6	2834394	2834395	rs2229092	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	LTA	rs2229092-C	NR	5E-9		0.0338477	[0.022-0.045] unit decrease	Affymetrix [321016] (imputed)	N
606	chr6_qbl_hap6	2834394	2834395	rs2229092	32641083	Hillary RF	2020-07-08	Genome Med	Multi-method genome- and epigenome-wide studies of inflammatory protein levels in healthy older adults.	Tumor necrosis factor beta levels	982 Scottish ancestry individuals	NA	6p21.33	NR	rs2229092-C	0.05477	5E-31		1.15038	[0.96-1.35] unit decrease	Illumina [7903493] (imputed)	N
606	chr6_qbl_hap6	2834594	2834595	rs4647195	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.33	NR	rs4647195-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
606	chr6_qbl_hap6	2835945	2835946	rs1799964	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	89,266 East Asian ancestry individuals	NA	6p21.33	NR	rs1799964-T	0.827369	7E-15		0.048854	[0.037-0.061] SD units decrease	Affymetrix, Illumina [16289068] (imputed)	N
606	chr6_qbl_hap6	2835945	2835946	rs1799964	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.33	NR	rs1799964-?	NR	1E-11				Affymetrix [~ 8270000] (imputed)	N
606	chr6_qbl_hap6	2835945	2835946	rs1799964	21102463	Franke A	2010-11-21	Nat Genet	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry trios	6p21.33	HLA-DQA2, LTA, TNF, LST1, LTB	rs1799964-C	0.209	4E-11		1.19	[1.13-1.25]	Affymetrix, Illumina [953241] (imputed)	N
606	chr6_qbl_hap6	2836668	2836669	rs1800629	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	TNF	rs1800629-A	NR	3E-12		0.0274188	[0.02-0.035] unit decrease	Affymetrix [323858] (imputed)	N
606	chr6_qbl_hap6	2836668	2836669	rs1800629	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	6p21.33	TNF	rs1800629-A	0.166	8E-19		0.2902	[0.23-0.35] mmHg increase	Affymetrix [NR] (imputed)	N
606	chr6_qbl_hap6	2837464	2837465	rs1800610	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NCR3	5,364 Icelandic ancestry individuals	NA	6p21.33		rs1800610-A	0.05852	5E-49		0.548141	[0.48-0.62] unit decrease	Illumina [7506463] (imputed)	N
606	chr6_qbl_hap6	2837828	2837829	rs3093662	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	6p21.33	NR	rs3093662-A	0.92	2E-10		0.0223	[0.015-0.029] unit increase	NR [NR]	N
606	chr6_qbl_hap6	2838281	2838282	rs3093664	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MICB	5,339 Icelandic ancestry individuals	NA	6p21.33		rs3093664-G	0.08964	1E-117		0.671593	[0.61-0.73] unit increase	Illumina [7506463] (imputed)	N
606	chr6_qbl_hap6	2838281	2838282	rs3093664	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p21.33	TNF	rs3093664-G	0.048	3E-7		0.13	[0.081-0.179] unit increase	Affymetrix, Illumina [7374092] (imputed)	N
606	chr6_qbl_hap6	2838281	2838282	rs3093664	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs3093664-A	0.916875	8E-64	(MICB, 9328_55_3)	0.73897094	[0.66-0.82] unit decrease	Illumina [> 1000000] (imputed)	N
606	chr6_qbl_hap6	2838281	2838282	rs3093664	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs3093664-A	0.916875	8E-11	(C4A C4B, 2182_54_1)	0.29393905	[0.21-0.38] unit increase	Illumina [> 1000000] (imputed)	N
606	chr6_qbl_hap6	2838281	2838282	rs3093664	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs3093664-A	0.916875	3E-14	(IL36A, 14150_7_3)	0.34182286	[0.25-0.43] unit increase	Illumina [> 1000000] (imputed)	N
606	chr6_qbl_hap6	2838281	2838282	rs3093664	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs3093664-A	0.916875	1E-111	(MICB, 5102_55_3)	0.9721669	[0.89-1.05] unit decrease	Illumina [> 1000000] (imputed)	N
606	chr6_qbl_hap6	2838281	2838282	rs3093664	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs3093664-A	0.916875	1E-10	(USP25, 9215_117_3)	0.28181827	[0.2-0.37] unit decrease	Illumina [> 1000000] (imputed)	N
606	chr6_qbl_hap6	2840489	2840490	rs1800628	27749845	Lesseur C	2016-10-17	Nat Genet	Genome-wide association analyses identify new susceptibility loci for oral cavity and pharyngeal cancer.	Oral cavity cancer	2,717 European ancestry cases, 273 cases, 5,984 European ancestry controls, 601 controls	NA	6p21.33	MICB, AIF1	rs1800628-A	0.07	7E-8		1.3962	NR	Illumina [7574753] (imputed)	N
606	chr6_qbl_hap6	2841153	2841154	rs769178	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs769178-G	0.94078125	8E-31	(NCR3, 3003_29_2)	0.5867702	[0.49-0.69] unit increase	Illumina [> 1000000] (imputed)	N
606	chr6_qbl_hap6	2841153	2841154	rs769178	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs769178-G	0.94078125	4E-26	(ISG15, 14148_2_3)	0.54343	[0.44-0.64] unit increase	Illumina [> 1000000] (imputed)	N
606	chr6_qbl_hap6	2841153	2841154	rs769178	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs769178-G	0.94078125	3E-10	(TNXB, 5698_60_3)	0.32249722	[0.22-0.42] unit increase	Illumina [> 1000000] (imputed)	N
606	chr6_qbl_hap6	2841153	2841154	rs769178	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs769178-G	0.94078125	1E-40	(MICA, 2730_58_2)	0.67921454	[0.58-0.78] unit increase	Illumina [> 1000000] (imputed)	N
606	chr6_qbl_hap6	2841153	2841154	rs769178	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs769178-G	0.94078125	1E-33	(C2, 3186_2_2)	0.63008285	[0.53-0.73] unit increase	Illumina [> 1000000] (imputed)	N
606	chr6_qbl_hap6	2841250	2841251	rs769177	30226566	Yamada Y	2018-09-04	Int J Mol Med	Identification of 13 novel susceptibility loci for early-onset myocardial infarction, hypertension, or chronic kidney disease.	Hypertension	3,444 Japanese ancestry cases, 4,636 Japanese ancestry controls	NA	6p21.33	Intergenic	rs769177-G	0.8280000000000001	1E-6		1.2345679		Illumina [31276]	N
606	chr6_qbl_hap6	2846489	2846490	rs7758790	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.33		rs7758790-T	0.774	1E-27				Affymetrix [10369434] (imputed)	N
606	chr6_qbl_hap6	2848769	2848770	rs2256965	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6p21.33		rs2256965-A	0.4188	2E-13		0.0106	[0.0079-0.0133] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
606	chr6_qbl_hap6	2849031	2849032	rs2256974	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.33	NR	rs2256974-A	0.375	2E-25		0.842	[0.81-0.88]	Illumina [11270530] (imputed)	N
606	chr6_qbl_hap6	2849031	2849032	rs2256974	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Tumor necrosis factor receptor 2 levels	21,758 European ancestry individuals	9,173 individuals	6p21.33		rs2256974-A	0.18	3E-10		0.0632	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
606	chr6_qbl_hap6	2849031	2849032	rs2256974	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p21.33	LST1	rs2256974-A	0.173581	3E-16		0.026160087	[0.02-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
606	chr6_qbl_hap6	2849031	2849032	rs2256974	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	6p21.33	LST1	rs2256974-A	0.17355	5E-37		0.039224777	[0.033-0.045] unit increase	Affymetrix [93095623] (imputed)	N
606	chr6_qbl_hap6	2849119	2849120	rs200801362	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	6p21.33	LST1	rs200801362-T	0.839907	4E-13		0.0188461	[0.014-0.024] unit decrease	Affymetrix [12370749]	N
606	chr6_qbl_hap6	2849798	2849798	rs28986170	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FEV1/FVC)	48,943 European ancestry individuals	57,176 European ancestry individuals, 38,199 individuals.	6p21.33	LST1	rs28986170-?	0.752	2E-10	(conditioned on rs2070600, rs9272528)	0.063	[0.043-0.083] unit increase	Affymetrix [27624732] (imputed)	N
606	chr6_qbl_hap6	2850222	2850223	rs1052248	33768542	Liu Y	2021-03-26	Clin Pharmacol Ther	Class II HLA Variants Associate with Risk of Pegaspargase Hypersensitivity.	Asparaginase hypersensitivity in acute lymphoblastic leukemia	798 Native American individuals	NA	6p21.33	NR	rs1052248-A	NR	4E-7		2.31	[NR]	Illumina [NR] (imputed)	N
606	chr6_qbl_hap6	2850222	2850223	rs1052248	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	6p21.33	Intergenic	rs1052248-A	0.2609	2E-8	(MTAG)	0.0146	[0.0095-0.0197] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
606	chr6_qbl_hap6	2850222	2850223	rs1052248	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p21.33	LST1	rs1052248-A	0.28	3E-17		1.05	[1.04-1.06]	Illumina [at least 560000] (imputed)	N
606	chr6_qbl_hap6	2850350	2850351	rs986475	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NCR3	rs986475-G	0.071	1E-31	(Natural cytotoxicity triggering receptor 3, NCR3.3003.29.2)	0.55	[0.45-0.65] unit decrease	Affymetrix [10572788] (imputed)	N
606	chr6_qbl_hap6	2851132	2851133	rs11575841	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	6p21.33	NR	rs11575841-?	NR	5E-20		9.163	NR z score decrease	Illumina [at least 830937] (imputed)	N
606	chr6_qbl_hap6	2851432	2851433	rs11575839	23028341	Yang X	2012-09-13	PLoS Genet	Genome-wide association study for serum complement C3 and C4 levels in healthy Chinese subjects.	Complement C3 and C4 levels	1,999 Han Chinese ancestry male individuals	1,496 Han Chinese ancestry male individuals	6p21.33	HLA-C	rs11575839-A	0.05	1E-54	(Serum level of C4)	0.23	[0.21-0.25] g/L decrease	Illumina [1940245] (imputed)	N
606	chr6_qbl_hap6	2851816	2851817	rs148533164	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.33		rs148533164-G	0.952	3E-15				Affymetrix [10369434] (imputed)	N
606	chr6_qbl_hap6	2851905	2851906	rs28732145	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p21.33	NR	rs28732145-?	NR	2E-11		0.2045	[0.15-0.26] unit increase	Illumina [at least 560000] (imputed)	N
606	chr6_qbl_hap6	2854309	2854310	rs11575837	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6p21.33		rs11575837-?	NR	5E-8		1.20533	[1.14-1.27]	NR [685523]	N
606	chr6_qbl_hap6	2854309	2854310	rs11575837	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.33	NR	rs11575837-T	0.012	8E-13		0.58141	[0.42-0.74] unit increase	Affymetrix [up to 8900000] (imputed)	N
606	chr6_qbl_hap6	2854986	2854987	rs28732146	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	NCR3	rs28732146-A	NR	1E-11		0.0239586	[0.017-0.031] unit decrease	Affymetrix [321016] (imputed)	N
606	chr6_qbl_hap6	2854986	2854987	rs28732146	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	NCR3	rs28732146-A	NR	2E-17		0.0326707	[0.025-0.04] unit decrease	Affymetrix [323123] (imputed)	N
606	chr6_qbl_hap6	2855148	2855149	rs9357135	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	6p21.33		rs9357135-T	0.046397421	1E-19		0.60996497	[0.48-0.74] unit increase	Illumina [13429980] (imputed)	N
606	chr6_qbl_hap6	2855783	2855784	rs2857599	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	NCR3	rs2857599-A	NR	1E-19		0.0348769	[0.027-0.042] unit decrease	Affymetrix [321016] (imputed)	N
606	chr6_qbl_hap6	2855783	2855784	rs2857599	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	6p21.33	Intergenic	rs2857599-G	NR	3E-8		0.0262207	[0.017-0.036] unit increase	Illumina [13519193] (imputed)	N
606	chr6_qbl_hap6	2855798	2855799	rs536378929	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	6p21.33	NCR3	rs536378929-T	0.9236	9E-26		0.0494	[0.04-0.059] unit decrease	Affymetrix [18391927] (imputed)	N
606	chr6_qbl_hap6	2856248	2856249	rs2515920	30226566	Yamada Y	2018-09-04	Int J Mol Med	Identification of 13 novel susceptibility loci for early-onset myocardial infarction, hypertension, or chronic kidney disease.	Hypertension	3,444 Japanese ancestry cases, 4,636 Japanese ancestry controls	NA	6p21.33	NCR3	rs2515920-T	0.827	5E-7		1.2345679		Illumina [31276]	N
606	chr6_qbl_hap6	2856397	2856398	rs3130632	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	NCR3	rs3130632-T	NR	1E-10		0.022096	[0.015-0.029] unit decrease	Affymetrix [319769] (imputed)	N
606	chr6_qbl_hap6	2856397	2856398	rs3130632	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	NCR3	rs3130632-T	NR	9E-10		0.0210507	[0.014-0.028] unit decrease	Affymetrix [319769] (imputed)	N
606	chr6_qbl_hap6	2856397	2856398	rs3130632	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	NCR3	rs3130632-T	NR	7E-11		0.0226077	[0.016-0.029] unit decrease	Affymetrix [321169] (imputed)	N
606	chr6_qbl_hap6	2856400	2856401	rs34744948	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.33	NR	rs34744948-?	NR	4E-11				Affymetrix [~ 8270000] (imputed)	N
606	chr6_qbl_hap6	2856861	2856862	rs2857598	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	NCR3	rs2857598-A	NR	4E-15		0.0338966	[0.025-0.042] unit increase	Affymetrix [323123] (imputed)	N
606	chr6_qbl_hap6	2856861	2856862	rs2857598	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.33	Intergenic	rs2857598-C	NR	7E-8	(women)	0.0362414	[0.023-0.049] unit decrease	Illumina [13520550] (imputed)	N
606	chr6_qbl_hap6	2856861	2856862	rs2857598	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.33	Intergenic	rs2857598-C	NR	5E-11		0.0308295	[0.022-0.04] unit decrease	Illumina [13520550] (imputed)	N
606	chr6_qbl_hap6	2856861	2856862	rs2857598	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	6p21.33	Intergenic	rs2857598-C	NR	9E-20		0.0496215	[0.039-0.06] unit decrease	Illumina [13520550] (imputed)	N
606	chr6_qbl_hap6	2856873	2856874	rs3132452	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	6p21.33	NR	rs3132452-?	NR	2E-7		0.095	[0.059-0.131] unit increase	Illumina [at least 560000] (imputed)	N
606	chr6_qbl_hap6	2857800	2857801	rs2515919	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	NCR3	rs2515919-G	NR	5E-12		0.020055	[0.014-0.026] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_qbl_hap6	2857800	2857801	rs2515919	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	NCR3	rs2515919-G	NR	2E-8		0.0182636	[0.012-0.025] unit increase	Affymetrix [323858] (imputed)	N
606	chr6_qbl_hap6	2857800	2857801	rs2515919	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	NCR3	rs2515919-G	NR	7E-11		0.0189369	[0.013-0.025] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_qbl_hap6	2857800	2857801	rs2515919	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	NCR3	rs2515919-G	NR	2E-10		0.0184288	[0.013-0.024] unit decrease	Affymetrix [321016] (imputed)	N
606	chr6_qbl_hap6	2857800	2857801	rs2515919	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	NCR3	rs2515919-G	NR	1E-28		0.0351117	[0.029-0.041] unit decrease	Affymetrix [323123] (imputed)	N
606	chr6_qbl_hap6	2857800	2857801	rs2515919	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	NCR3	rs2515919-G	NR	8E-13		0.0210432	[0.015-0.027] unit increase	Affymetrix [321169] (imputed)	N
606	chr6_qbl_hap6	2857800	2857801	rs2515919	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	6p21.33	Intergenic	rs2515919-A	0.6258	1E-10	(MTAG)	0.0119	[0.0082-0.0156] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
606	chr6_qbl_hap6	2857800	2857801	rs2515919	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	6p21.33	Intergenic	rs2515919-A	0.6255	3E-16	(MTAG)	0.0139	[0.011-0.017] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
606	chr6_qbl_hap6	2857800	2857801	rs2515919	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6p21.33	Intergenic	rs2515919-A	0.63	3E-16	(MTAG)	0.0111	[0.0084-0.0138] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
606	chr6_qbl_hap6	2858455	2858456	rs2844480	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p21.33	NR	rs2844480-?	NR	2E-18		0.0887	[0.069-0.108] unit increase	Illumina [at least 560000] (imputed)	N
606	chr6_qbl_hap6	2858944	2858945	rs150379130	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	NCR3	rs150379130-T	NR	4E-9		0.0270941	[0.018-0.036] unit decrease	Affymetrix [323123] (imputed)	N
606	chr6_qbl_hap6	2859171	2859172	rs111728624	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	NCR3	rs111728624-C	NR	3E-11		0.0281508	[0.02-0.036] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_qbl_hap6	2859171	2859172	rs111728624	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.33	NCR3	rs111728624-C	NR	2E-8		0.0241088	[0.016-0.032] unit increase	Affymetrix [321114] (imputed)	N
606	chr6_qbl_hap6	2859171	2859172	rs111728624	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	NCR3	rs111728624-C	NR	1E-11		0.0289838	[0.021-0.037] unit increase	Affymetrix [321169] (imputed)	N
606	chr6_qbl_hap6	2859803	2859804	rs3130631	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p21.33	NR	rs3130631-?	NR	2E-9		0.0861	[0.058-0.115] unit decrease	Illumina [at least 560000] (imputed)	N
606	chr6_qbl_hap6	2860475	2860476	rs17200816	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	NCR3	rs17200816-T	NR	2E-11		0.0283425	[0.02-0.037] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_qbl_hap6	2861057	2861058	rs2857596	32752121	Nedoszytko B	2020-07-31	Int J Mol Sci	Results from a Genome-Wide Association Study (GWAS) in Mastocytosis Reveal New Gene Polymorphisms Associated with WHO Subgroups.	Systemic mastocytosis	93 European ancestry cases, 5,606 European ancestry controls	NA	6p21.33	NRC3	rs2857596-C	0.2394	2E-10		2.582	[2.28-2.88]	Illumina [281811]	N
606	chr6_qbl_hap6	2862103	2862104	rs2857595	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	NCR3	rs2857595-A	NR	3E-11		0.0254138	[0.018-0.033] unit decrease	Affymetrix [127266] (imputed)	N
606	chr6_qbl_hap6	2862103	2862104	rs2857595	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FEV1/FVC)	48,943 European ancestry individuals	57,176 European ancestry individuals, 38,199 individuals.	6p21.33	NCR3	rs2857595-A	0.213	4E-9		0.048	[0.032-0.064] unit decrease	Affymetrix [27624732] (imputed)	N
606	chr6_qbl_hap6	2862103	2862104	rs2857595	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FEV1)	48,943 European ancestry individuals.	57,176 European ancestry individuals, 38,199 individuals.	6p21.33	NCR3	rs2857595-A	0.21	2E-6		0.039	[0.023-0.055] unit decrease	Affymetrix [up to 27624732] (imputed)	N
606	chr6_qbl_hap6	2862103	2862104	rs2857595	25936594	Tomer Y	2015-04-27	J Autoimmun	Genome wide identification of new genes and pathways in patients with both autoimmune thyroiditis and type 1 diabetes.	Type 1 diabetes and autoimmune thyroid diseases	346 European ancestry cases, 727 European ancestry controls	185 European ancestry cases, 340 European ancestry controls	6p21.33	NFKBIL1, LTA, NCR3	rs2857595-T	NR	2E-23		2.3765		Illumina [514008]	N
606	chr6_qbl_hap6	2862103	2862104	rs2857595	25194280	Wei Q	2014-09-07	Nat Genet	Genome-wide association study identifies three susceptibility loci for laryngeal squamous cell carcinoma in the Chinese population.	Laryngeal squamous cell carcinoma	993 Chinese ancestry cases, 1,995 Chinese ancestry controls	2,398 Chinese ancestry cases, 2,804 Chinese ancestry controls	6p21.33	AIF1, HLA	rs2857595-?	0.50	2E-15		1.3	[1.22-1.39]	Affymetrix [662108]	N
606	chr6_qbl_hap6	2862103	2862104	rs2857595	23284291	Hancock DB	2012-12-20	PLoS Genet	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (smoking interaction)	50,047 European ancestry individuals	NA	6p21.33	NCR3	rs2857595-?	NR	8E-8	(FEV1/FVC, Ever-smoking)			NR [~ 2500000] (imputed)	N
606	chr6_qbl_hap6	2862103	2862104	rs2857595	21946350	Soler Artigas M	2011-09-25	Nat Genet	Genome-wide association and large-scale follow up identifies 16 new loci influencing lung function.	Pulmonary function	48,201 European ancestry individuals	46,411 European ancestry individuals	6p21.33	NCR3	rs2857595-G	0.81	2E-10	(FEV1/FVC)	0.037	[0.025-0.049] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
606	chr6_qbl_hap6	2862103	2862104	rs2857595	21946350	Soler Artigas M	2011-09-25	Nat Genet	Genome-wide association and large-scale follow up identifies 16 new loci influencing lung function.	Pulmonary function	48,201 European ancestry individuals	46,411 European ancestry individuals	6p21.33	NCR3	rs2857595-G	0.81	1E-6	(FEV1)	0.025	[0.02-0.04] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
606	chr6_qbl_hap6	2863146	2863147	rs17207190	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Strep throat	52,487 European ancestry cases, 22,017 European ancestry controls	NA	6p21.33	NR	rs17207190-?	NR	8E-8		0.0766	[0.049-0.105] unit decrease	Illumina [at least 560000] (imputed)	N
606	chr6_qbl_hap6	2863330	2863331	rs2507960	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Diastolic blood pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	6p21.33	HLA	rs2507960-A	0.139916952	3E-6		0.1878	[0.11-0.27] unit increase	Affymetrix [~ 9800000] (imputed)	N
606	chr6_qbl_hap6	2863527	2863528	rs9267516	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	6p21.33		rs9267516-T	0.364098	1E-16		0.0286201	[0.024-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
606	chr6_qbl_hap6	2865961	2865962	rs2736186	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	Intergenic	rs2736186-A	0.03768844	1E-29	(EA, Neutrophil collagenase)	1.233	[1.03-1.44] unit increase	Affymetrix [509946]	N
606	chr6_qbl_hap6	2866273	2866274	rs2857594	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	Triglyceride levels	291,107 British ancestry individuals	NA	6p21.33	TBC1D22B	rs2857594-C	0.148615	4E-11		0.01965	[0.014-0.025] unit decrease	Affymetrix [9463307] (imputed)	N
606	chr6_qbl_hap6	2866273	2866274	rs2857594	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	Systolic blood pressure	291,107 British ancestry individuals	NA	6p21.33	TBC1D22B	rs2857594-C	0.148615	1E-7		0.36076	[0.23-0.49] unit decrease	Affymetrix [9463307] (imputed)	N
606	chr6_qbl_hap6	2866293	2866294	rs41291790	35232999	Garcia-Etxebarria K	2022-03-01	Sci Rep	Local genetic variation of inflammatory bowel disease in Basque population and its effect in risk prediction.	Ulcerative colitis	208 European ancestry cases, 935 European ancestry controls	NA	6p21.33		rs41291790-A	0.022	3E-8		5.3		Illumina [5409651] (imputed)	N
606	chr6_qbl_hap6	2866293	2866294	rs41291790	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	334,944 European ancestry, NR ancestry individuals	NA	6p21.33		rs41291790-?	NR	5E-8				Affymetrix [NR] (imputed)	N
606	chr6_qbl_hap6	2866585	2866586	rs2844479	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	UQCRHP1	rs2844479-C	NR	4E-14		0.0227975	[0.017-0.029] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_qbl_hap6	2866585	2866586	rs2844479	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	UQCRHP1	rs2844479-C	NR	6E-13		0.02173	[0.016-0.028] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_qbl_hap6	2866585	2866586	rs2844479	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	UQCRHP1	rs2844479-C	NR	8E-11		0.0195735	[0.014-0.025] unit decrease	Affymetrix [321016] (imputed)	N
606	chr6_qbl_hap6	2866585	2866586	rs2844479	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	UQCRHP1	rs2844479-C	NR	1E-14		0.0236304	[0.018-0.03] unit increase	Affymetrix [321169] (imputed)	N
606	chr6_qbl_hap6	2866585	2866586	rs2844479	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	6p21.33		rs2844479-C	0.326375	4E-26		0.027727867	[0.023-0.033] unit increase	Affymetrix [93095623] (imputed)	N
606	chr6_qbl_hap6	2866585	2866586	rs2844479	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	6p21.33	AIF1	rs2844479-A	0.66	3E-10		1.14	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
606	chr6_qbl_hap6	2866585	2866586	rs2844479	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs2844479-C	0.393698650943396	4E-6	(IGP60)	0.151	[0.087-0.215] unit increase	Illumina [~ 2500000] (imputed)	N
606	chr6_qbl_hap6	2866585	2866586	rs2844479	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs2844479-C	0.393631380483438	4E-6	(IGP6)	0.1506	[0.086-0.215] unit decrease	Illumina [~ 2500000] (imputed)	N
606	chr6_qbl_hap6	2866585	2866586	rs2844479	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs2844479-C	0.393516127507802	9E-6	(IGP61)	0.1445	[0.081-0.208] unit increase	Illumina [~ 2500000] (imputed)	N
606	chr6_qbl_hap6	2866585	2866586	rs2844479	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs2844479-C	0.393054780607685	7E-6	(IGP58)	0.1476	[0.083-0.212] unit increase	Illumina [~ 2500000] (imputed)	N
606	chr6_qbl_hap6	2866585	2866586	rs2844479	19079260	Thorleifsson G	2008-12-14	Nat Genet	Genome-wide association yields new sequence variants at seven loci that associate with measures of obesity.	Weight	72,598 European ancestry individuals, 1,160 African American individuals	Up to 11,036 European ancestry individuals, 32,615 individuals	6p21.33	AIF1, NCR3	rs2844479-T	0.68	2E-8		3.58	[2.33-4.83] percentage SD increase	Illumina [305846]	N
606	chr6_qbl_hap6	2866739	2866740	rs9267517	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	IgD on unswitched memory B cell	3,636 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs9267517-A	0.2447	1E-13		0.2671	[0.2-0.34] unit decrease	Illumina [18230756] (imputed)	N
606	chr6_qbl_hap6	2867206	2867207	rs144360625	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	6p21.33		rs144360625-C	0.125812	9E-19		0.029980848	[0.023-0.037] unit increase	Affymetrix [93095623] (imputed)	N
606	chr6_qbl_hap6	2867206	2867207	rs144360625	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	6p21.33	NR	rs144360625-?	NR	3E-11	(MIC-A)	0.57967	[0.41-0.75] unit decrease	Illumina [11901634] (imputed)	N
606	chr6_qbl_hap6	2867786	2867786	rs144831544	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	UQCRHP1	rs144831544-AAATTAGC	NR	7E-14		0.026213	[0.019-0.033] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_qbl_hap6	2867786	2867786	rs144831544	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	UQCRHP1	rs144831544-AAATTAGC	NR	4E-13		0.0254281	[0.019-0.032] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_qbl_hap6	2867786	2867786	rs144831544	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	UQCRHP1	rs144831544-AAATTAGC	NR	9E-16		0.0284632	[0.022-0.035] unit increase	Affymetrix [321169] (imputed)	N
606	chr6_qbl_hap6	2868168	2868169	rs28895016	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	6p21.33	NCR3, AIF1	rs28895016-C	0.91	9E-16		1.097	[1.07-1.12]	Affymetrix, Illumina [8307659] (imputed)	N
606	chr6_qbl_hap6	2868543	2868544	rs28366149	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	UQCRHP1	rs28366149-A	NR	4E-9		0.0225023	[0.015-0.03] unit decrease	Affymetrix [323123] (imputed)	N
606	chr6_qbl_hap6	2868716	2868717	rs28474889	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	6p21.33	UQCRHP1	rs28474889-T	0.200504	2E-19		0.025810601	[0.02-0.031] unit increase	Affymetrix [93095623] (imputed)	N
606	chr6_qbl_hap6	2868716	2868717	rs28474889	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6p21.33	UQCRHP1	rs28474889-T	0.200511	2E-24		0.02926071	[0.024-0.035] unit increase	Affymetrix [93095623] (imputed)	N
606	chr6_qbl_hap6	2868716	2868717	rs28474889	29773799	Horikoshi M	2018-05-17	Nat Commun	Elucidating the genetic architecture of reproductive ageing in the Japanese population.	Menopause (age at onset)	43,861 Japanese ancestry women	32,545 European ancestry women	6p21.33	MSH5 / HLA	rs28474889-C	0.73	5E-16	(japanese)	0.24	[0.18-0.3] year increase	Illumina [at least 532488] (imputed)	N
606	chr6_qbl_hap6	2868919	2868920	rs9348876	22936669	Julia A	2012-08-30	Gut	A genome-wide association study on a southern European population identifies a new Crohn's disease susceptibility locus at RBX1-EP300.	Crohn's disease	1,277 European ancestry cases, 1,488 European ancestry controls	1,365 European ancestry cases, 1,396 European ancestry controls	6p21.33	AIF1	rs9348876-T	0.06	3E-6		1.41	[1.22-1.63]	Illumina [508934]	N
606	chr6_qbl_hap6	2869268	2869269	rs28732148	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	6p21.33	AIF1	rs28732148-C	0.932302	2E-9		0.0218984	[0.015-0.029] unit decrease	NR [13737936] (imputed)	N
606	chr6_qbl_hap6	2870742	2870743	rs3130060	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	UQCRHP1	rs3130060-T	NR	8E-10		0.0239184	[0.016-0.032] unit decrease	Affymetrix [323858] (imputed)	N
606	chr6_qbl_hap6	2870742	2870743	rs3130060	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	UQCRHP1	rs3130060-T	NR	2E-8		0.0217476	[0.014-0.029] unit decrease	Affymetrix [127266] (imputed)	N
606	chr6_qbl_hap6	2870742	2870743	rs3130060	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	UQCRHP1	rs3130060-T	NR	6E-9		0.0221795	[0.015-0.03] unit increase	Affymetrix [323123] (imputed)	N
606	chr6_qbl_hap6	2870926	2870927	rs2857702	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	UQCRHP1	rs2857702-C	NR	7E-9		0.0219268	[0.015-0.029] unit decrease	Affymetrix [323123] (imputed)	N
606	chr6_qbl_hap6	2874148	2874149	rs3993747	31263887	Adams MJ	2019-07-01	Int J Epidemiol	Factors associated with sharing e-mail information and mental health survey participation in large population cohorts.	Mental health study participation (completed survey)	122,647 British ancestry cases, 248,781 British ancestry controls	NA	6p21.33	NR	rs3993747-A	0.65	1E-9		1.0319917	[1.02-1.04]	NR [16367095] (imputed)	N
606	chr6_qbl_hap6	2874180	2874181	rs2471960	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Non-Hodgkin's lymphoma	2,400 European ancestry cases, 410,350 European ancestry controls	NA	6p21.33		rs2471960-A	NR	1E-11		1.2300123	NR	Affymetrix [7846216] (imputed)	N
606	chr6_qbl_hap6	2874678	2874679	rs542914466	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.33	NR	rs542914466-A	0.009	2E-37	(conditional)	18.321	[17.88-18.77]	Illumina [11270530] (imputed)	N
606	chr6_qbl_hap6	2875665	2875666	rs3132451	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	AIF1	rs3132451-C	NR	3E-14		0.0290333	[0.022-0.037] unit decrease	Affymetrix [323858] (imputed)	N
606	chr6_qbl_hap6	2875665	2875666	rs3132451	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	AIF1	rs3132451-C	NR	1E-12		0.0272438	[0.02-0.035] unit decrease	Affymetrix [127266] (imputed)	N
606	chr6_qbl_hap6	2875665	2875666	rs3132451	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	AIF1	rs3132451-C	NR	3E-15		0.029579	[0.022-0.037] unit increase	Affymetrix [323123] (imputed)	N
606	chr6_qbl_hap6	2875665	2875666	rs3132451	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	AIF1	rs3132451-C	0.217	7E-56	(cAMP-specific 3',5'-cyclic phosphodiesterase 4D, PDE4D.5255.22.3)	0.46	[0.4-0.52] unit decrease	Affymetrix [10572788] (imputed)	N
606	chr6_qbl_hap6	2875665	2875666	rs3132451	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	AIF1	rs3132451-C	0.217	4E-34	(T-cell surface protein tactile, CD96.9735.44.3)	0.36	[0.3-0.42] unit decrease	Affymetrix [10572788] (imputed)	N
606	chr6_qbl_hap6	2875665	2875666	rs3132451	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	AIF1	rs3132451-C	0.217	2E-55	(Glutamate receptor 4, GRIA4.10760.107.3)	0.46	[0.4-0.52] unit decrease	Affymetrix [10572788] (imputed)	N
606	chr6_qbl_hap6	2875665	2875666	rs3132451	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	6p21.33	NCR3, AIF1	rs3132451-G	NR	3E-12		0.171592	[0.12-0.22] unit decrease	Illumina [at least 950000] (imputed)	N
606	chr6_qbl_hap6	2876795	2876796	rs2844475	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	AIF1	rs2844475-A	NR	2E-8		0.0183217	[0.012-0.025] unit increase	Affymetrix [323858] (imputed)	N
606	chr6_qbl_hap6	2876795	2876796	rs2844475	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	AIF1	rs2844475-A	NR	5E-13		0.0229918	[0.017-0.029] unit decrease	Affymetrix [323123] (imputed)	N
606	chr6_qbl_hap6	2876952	2876953	rs2736182	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	6p21.33	AIF1	rs2736182-A	0.019095	6E-9		0.0493347	[0.033-0.066] unit increase	Affymetrix [93095623] (imputed)	N
606	chr6_qbl_hap6	2876952	2876953	rs2736182	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	6p21.33	AIF1	rs2736182-A	0.019095	2E-13		0.06039303	[0.044-0.077] unit decrease	Affymetrix [93095623] (imputed)	N
606	chr6_qbl_hap6	2877481	2877482	rs34451818	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.33		rs34451818-G	NR	1E-9		1.2642225	[1.17-1.36]	Affymetrix [7846216] (imputed)	N
606	chr6_qbl_hap6	2879385	2879386	rs144309021	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	6p21.33	PRRC2A	rs144309021-T	0.1234	1E-9	(S1P d16:1)	0.1184	[0.08-0.156] unit decrease	Illumina [~ 47000000] (imputed)	N
606	chr6_qbl_hap6	2880103	2880104	rs2857695	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	AIF1	rs2857695-C	NR	2E-15		0.0312768	[0.024-0.039] unit increase	Affymetrix [323123] (imputed)	N
606	chr6_qbl_hap6	2880684	2880685	rs140054334	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.33	NR	rs140054334-T	0.017	7E-11		0.45969	[0.32-0.6] unit increase	Affymetrix [up to 8900000] (imputed)	N
606	chr6_qbl_hap6	2880684	2880685	rs140054334	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.33	NR	rs140054334-T	0.017	3E-6	(men)	0.387194	[0.23-0.55] unit increase	Affymetrix [up to 8900000] (imputed)	N
606	chr6_qbl_hap6	2881200	2881201	rs2736176	32109421	Li C	2020-02-20	Am J Hum Genet	Genome-Wide Association Analysis in Humans Links Nucleotide Metabolism to Leukocyte Telomere Length.	Leukocyte telomere length	78,592 European ancestry individuals	NA	6p21.33	PRRC2A	rs2736176-C	0.31	4E-10		0.035	[0.023-0.047] unit increase	Affymetrix, Illumina, Perlegen [up to 30071938] (imputed)	N
606	chr6_qbl_hap6	2881509	2881510	rs2857694	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PRRC2A	rs2857694-T	NR	2E-9		0.0174435	[0.012-0.023] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_qbl_hap6	2881509	2881510	rs2857694	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	PRRC2A	rs2857694-T	NR	4E-8		0.0161057	[0.01-0.022] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_qbl_hap6	2881660	2881664	rs145554793	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	6p21.33	PRRC2A, SNORA38	rs145554793-C	0.364548	5E-15		0.020902038	[0.016-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
606	chr6_qbl_hap6	2882024	2882025	rs2857693	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	PRRC2A	rs2857693-T	NR	2E-11		0.019953	[0.014-0.026] unit increase	Affymetrix [321169] (imputed)	N
606	chr6_qbl_hap6	2882024	2882025	rs2857693	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	6p21.33	BAT2	rs2857693-T	0.38	3E-29		0.034	[0.028-0.04] unit decrease	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
606	chr6_qbl_hap6	2882901	2882902	rs3115665	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic glomerulonephritis	566 European ancestry cases, 475,255 European ancestry controls, 210 East Asian ancestry cases, 174,345 East Asian ancestry controls	NA	6p21.33		rs3115665-G	NR	3E-8		0.929	[0.6-1.26] unit increase	Affymetrix, Illumina [25844108] (imputed)	N
606	chr6_qbl_hap6	2883313	2883314	rs2844472	33563987	Tyrrell J	2021-02-09	Nat Commun	Genetic predictors of participation in optional components of UK Biobank.	Acceptance of an invitation to participate in a mental health questionnaire	146,074 European ancestry cases, 148,713 European ancestry controls	NA	6p21.33	NR	rs2844472-A	0.65	2E-9		1.03	[1.02, 1.04]	Affymetrix [39302896] (imputed)	N
606	chr6_qbl_hap6	2883372	2883373	rs2736173	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p21.33	BAT2	rs2736173-A	0.03	2E-7	(EA)	3.58	[2.14-5.98]	Illumina [up to 547389]	N
607	chr6_qbl_hap6	2884535	2884536	rs2736172	24132900	Kanazawa T	2013-10-01	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of atypical psychosis.	Psychosis (atypical)	47 Japanese ancestry cases, 882 Japanese ancestry controls	NA	6p21.33	TNF, MICB	rs2736172-?		4E-6				Affymetrix [545513]	N
607	chr6_qbl_hap6	2885556	2885557	rs2260051	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		6p21.33	PRRC2A	rs2260051-A	0.438452	2E-17		0.011743	[0.009-0.0144] unit decrease	Affymetrix [12370749]	N
607	chr6_qbl_hap6	2885556	2885557	rs2260051	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	Waist circumference	291,107 British ancestry individuals	NA	6p21.33	PRRC2A	rs2260051-A	0.44273999	2E-13		0.230643	[0.17-0.29] unit decrease	Affymetrix [9463307] (imputed)	N
607	chr6_qbl_hap6	2885556	2885557	rs2260051	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	6p21.33	NR	rs2260051-A	0.4422	8E-15		0.019329904	[0.014-0.024] unit decrease	Affymetrix [10549349] (imputed)	N
607	chr6_qbl_hap6	2885556	2885557	rs2260051	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	6p21.33	PRRC2A	rs2260051-A	0.4425	1E-15		0.002	[0.0014-0.0026] unit increase	Affymetrix [15275733] (imputed)	N
607	chr6_qbl_hap6	2885556	2885557	rs2260051	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	223,215 British ancestry individuals	111,610 British ancestry individuals	6p21.33	PRRC2A	rs2260051-T	0.56	7E-12		0.002	[0.0014-0.0026] unit decrease	Affymetrix [15275733] (imputed)	N
607	chr6_qbl_hap6	2886458	2886459	rs3135044	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	6p21.33	NR	rs3135044-?		9E-11		0.0145909	[0.01-0.019] unit decrease	Affymetrix [19400418] (imputed)	N
607	chr6_qbl_hap6	2889125	2889126	rs2736171	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PRRC2A	rs2736171-G	NR	3E-9		0.0173452	[0.012-0.023] unit decrease	Affymetrix [321016] (imputed)	N
607	chr6_qbl_hap6	2889520	2889521	rs1046080	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Sex hormone-binding globulin levels	389,354 European ancestry individuals	NA	6p21.33		rs1046080-A	0.72	4E-8		0.013	nmol/L decrease	NR [NR] (imputed)	N
607	chr6_qbl_hap6	2889520	2889521	rs1046080	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	6p21.33		rs1046080-A	0.72	2E-18				NR [NR] (imputed)	N
607	chr6_qbl_hap6	2889520	2889521	rs1046080	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	6p21.33		rs1046080-A	0.72	4E-22		0.016	% increase	NR [NR] (imputed)	N
607	chr6_qbl_hap6	2889520	2889521	rs1046080	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Aspartate aminotransferase levels	424,778 European ancestry individuals	NA	6p21.33		rs1046080-A	0.72	2E-7		0.011	U/L decrease	NR [NR] (imputed)	N
607	chr6_qbl_hap6	2889520	2889521	rs1046080	32534018	Liu X	2020-06-10	Brain Behav Immun	Genetic factors underlying the bidirectional relationship between autoimmune and mental disorders - findings from a Danish population-based study.	Autoimmune traits	1,383 Danish ancestry cases, 62,656 Danish ancestry controls	NA	6p21.33	NR	rs1046080-C	0.26	2E-12		0.72	[0.65-0.79]	NR [7721839] (imputed)	N
607	chr6_qbl_hap6	2889520	2889521	rs1046080	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	6p21.33	NR	rs1046080-?	NR	5E-8		0.12785	[0.082-0.174] unit increase	Affymetrix [7794483] (imputed)	N
607	chr6_qbl_hap6	2889520	2889521	rs1046080	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	6p21.33	NR	rs1046080-?	NR	3E-6	(male)	0.13448	[0.078-0.191] unit increase	Affymetrix [7794483] (imputed)	N
607	chr6_qbl_hap6	2889520	2889521	rs1046080	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite ratios	Up to 5,591 European ancestry individuals	Up to 1,767 European ancestry individuals	6p21.33	PRRC2A	rs1046080-A	0.74	1E-14	(X-11444/X-11470)	0.027	[0.019-0.035] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
607	chr6_qbl_hap6	2889776	2889777	rs3132450	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PRRC2A	rs3132450-G	NR	7E-11		0.0268129	[0.019-0.035] unit decrease	Affymetrix [319769] (imputed)	N
607	chr6_qbl_hap6	2889776	2889777	rs3132450	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	PRRC2A	rs3132450-G	NR	8E-12		0.0285009	[0.02-0.037] unit decrease	Affymetrix [321169] (imputed)	N
607	chr6_qbl_hap6	2891338	2891339	rs3130623	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	6p21.33		rs3130623-T	NR	8E-24		0.0277	[0.022-0.033] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
607	chr6_qbl_hap6	2891346	2891347	rs2736163	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein APOM	5,364 Icelandic ancestry individuals	NA	6p21.33		rs2736163-T	0.03403	2E-15		0.413547	[0.31-0.52] unit decrease	Illumina [7506463] (imputed)	N
607	chr6_qbl_hap6	2891391	2891392	rs2242660	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cervical cancer	6,563 European ancestry cases, 410,350 European ancestry controls	NA	6p21.33		rs2242660-G	NR	2E-7		1.1015	NR	Affymetrix [7846216] (imputed)	N
607	chr6_qbl_hap6	2895479	2895480	rs3115663	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.33	BAT2	rs3115663-G	0.1812	7E-57		3.04	[NR]	Illumina [242824]	N
607	chr6_qbl_hap6	2896603	2896604	rs1046089	23894747	Aberg KA	2013-02-01	JAMA Psychiatry	A comprehensive family-based replication study of schizophrenia genes.	Schizophrenia	11,185 European ancestry cases, 10,768 European ancestry controls	1,262 African American ancestry individuals, 2,740 European ancestry individuals, 2,296 Asian ancestry individuals	6p21.33	PRRC2A, BAG6	rs1046089-G	0.34	4E-6	(EA)	1.3	[NR]	NR [1085772] (imputed)	N
607	chr6_qbl_hap6	2896603	2896604	rs1046089	23307926	Perry JR	2013-01-09	Hum Mol Genet	A genome-wide association study of early menopause and the combined impact of identified variants.	Menopause (age at onset)	3,493 European ancestry cases, 13,598 European ancestry controls	3,412 European ancestry cases, 4,928 European ancestry controls	6p21.33	NR	rs1046089-A	0.3492	4E-11		0.1919	[0.13-0.25] years increase	NR [NR]	N
607	chr6_qbl_hap6	2896603	2896604	rs1046089	22267201	Stolk L	2012-01-22	Nat Genet	Meta-analyses identify 13 loci associated with age at menopause and highlight DNA repair and immune pathways.	Menopause (age at onset)	38,968 European ancestry female individuals	Up to 14,435 European ancestry female individuals	6p21.33	PRRC2A	rs1046089-A	0.353	2E-16		0.213	[0.16-0.26] years decrease	Affymetrix, Illumina [2551160] (imputed)	N
607	chr6_qbl_hap6	2897227	2897228	rs2261033	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PRRC2A	rs2261033-G	NR	3E-12		0.0196963	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
607	chr6_qbl_hap6	2897227	2897228	rs2261033	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	PRRC2A	rs2261033-G	NR	2E-12		0.0222106	[0.016-0.028] unit increase	Affymetrix [323858] (imputed)	N
607	chr6_qbl_hap6	2897227	2897228	rs2261033	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	PRRC2A	rs2261033-G	NR	5E-11		0.0185935	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
607	chr6_qbl_hap6	2897227	2897228	rs2261033	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	PRRC2A	rs2261033-G	NR	2E-10		0.0200207	[0.014-0.026] unit increase	Affymetrix [127266] (imputed)	N
607	chr6_qbl_hap6	2897227	2897228	rs2261033	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PRRC2A	rs2261033-G	NR	2E-11		0.0189094	[0.013-0.024] unit decrease	Affymetrix [321016] (imputed)	N
607	chr6_qbl_hap6	2897227	2897228	rs2261033	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	PRRC2A	rs2261033-G	NR	3E-24		0.0314057	[0.025-0.037] unit decrease	Affymetrix [323123] (imputed)	N
607	chr6_qbl_hap6	2897227	2897228	rs2261033	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	PRRC2A	rs2261033-G	NR	2E-12		0.0202126	[0.015-0.026] unit increase	Affymetrix [321169] (imputed)	N
607	chr6_qbl_hap6	2897227	2897228	rs2261033	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.33	PRRC2A	rs2261033-A	0.5235	9E-11		0.0461	[0.032-0.06] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
607	chr6_qbl_hap6	2897991	2897992	rs35502919	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	PRRC2A	rs35502919-A	NR	5E-11		0.0387702	[0.027-0.05] unit increase	Affymetrix [321169] (imputed)	N
607	chr6_qbl_hap6	2897991	2897992	rs35502919	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	6p21.33	NR	rs35502919-?		9E-14	(AGER)	0.631	[NR] unit decrease	Illumina [NR]	N
607	chr6_qbl_hap6	2898227	2898228	rs10885	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p21.33	PRRC2A	rs10885-T		2E-36		0.035	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
607	chr6_qbl_hap6	2898530	2898531	rs34137317	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first birth	542,901 European ancestry individuals	NA	6p21.33	PRRC2A	rs34137317-T	0.0277	6E-10		0.2473	[0.17-0.33] unit increase	NR [9744772] (imputed)	N
607	chr6_qbl_hap6	2898835	2898836	rs2736155	34741163	Eijsbouts C	2021-11-05	Nat Genet	Genome-wide analysis of 53,400 people with irritable bowel syndrome highlights shared genetic pathways with mood and anxiety disorders.	Irritable bowel syndrome	53,400 European ancestry cases, 433,201 European ancestry controls	205,252 European ancestry cases, 1,384,055 European ancestry controls	6p21.33	NR	rs2736155-C	0.4758	3E-12		0.022300169	[0.016-0.029] unit increase	Illumina [9885498] (imputed)	N
607	chr6_qbl_hap6	2898835	2898836	rs2736155	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	PRRC2A	rs2736155-C	NR	6E-10		0.0194264	[0.013-0.026] unit increase	Affymetrix [323858] (imputed)	N
607	chr6_qbl_hap6	2898835	2898836	rs2736155	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	PRRC2A	rs2736155-C	NR	8E-9		0.0180894	[0.012-0.024] unit increase	Affymetrix [127266] (imputed)	N
607	chr6_qbl_hap6	2898835	2898836	rs2736155	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Anxiety	at least 23,606 European ancestry cases, at least 113,351 European ancestry controls	624,615 European ancestry cases, 1,310,854 European ancestry controls	6p21.33	PRRC2A	rs2736155-G	0.4811	5E-18		0.019583363	[0.015-0.025] unit decrease	NR [9417325] (imputed)	N
607	chr6_qbl_hap6	2898835	2898836	rs2736155	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p21.33	NR	rs2736155-C	0.478	6E-7		0.0059	[0.0035-0.0083] unit increase	NR [7666894] (imputed)	N
607	chr6_qbl_hap6	2899084	2899085	rs7889	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	6p21.33	BAG6	rs7889-C	0.3609	3E-8		0.012577614	[0.0082-0.017] unit increase	Affymetrix [11514654] (imputed)	N
607	chr6_qbl_hap6	2899084	2899085	rs7889	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	6p21.33	PRRC2A	rs7889-C	0.3904	4E-14		0.2499	[0.19-0.31] mmHg decrease	Affymetrix [NR] (imputed)	N
607	chr6_qbl_hap6	2900011	2900012	rs2077491	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	BAG6	rs2077491-C	NR	8E-13		0.0219509	[0.016-0.028] unit decrease	Affymetrix [323123] (imputed)	N
607	chr6_qbl_hap6	2900011	2900012	rs2077491	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	BAG6	rs2077491-C	NR	2E-15		0.0226711	[0.017-0.028] unit increase	Affymetrix [321169] (imputed)	N
607	chr6_qbl_hap6	2900011	2900012	rs2077491	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA	6p21.33	NR	rs2077491-?	NR	5E-6		0.0322	[0.018-0.046] unit decrease	Illumina [at least 560000] (imputed)	N
607	chr6_qbl_hap6	2900387	2900388	rs2178899	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	6p21.33	NA	rs2178899-A	0.8833	5E-23		0.0243	[0.019-0.029] unit increase	NR [~ 27400000] (imputed)	N
607	chr6_qbl_hap6	2900685	2900686	rs750332	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls	NA	6p21.33	BAG6	rs750332-C	0.180658	4E-14		0.055028614	[0.041-0.069] unit decrease	Affymetrix [7288503] (imputed)	N
607	chr6_qbl_hap6	2904165	2904166	rs1077393	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	6p21.33	HLA-C	rs1077393-A	0.477302	2E-8		5.65	z score decrease	NR [10847151] (imputed)	N
607	chr6_qbl_hap6	2904165	2904166	rs1077393	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling worry	372,869 European ancestry individuals	NA	6p21.33	HLA-C	rs1077393-A	0.477302	4E-10		6.267	unit decrease	NR [10847151] (imputed)	N
607	chr6_qbl_hap6	2907378	2907379	rs3130048	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6p21.33	NR	rs3130048-?	NR	1E-11				Affymetrix [~ 8270000] (imputed)	N
607	chr6_qbl_hap6	2907378	2907379	rs3130048	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	6p21.33	NA	rs3130048-T	0.7315	2E-20		0.0169	[0.013-0.02] unit decrease	NR [~ 27400000] (imputed)	N
607	chr6_qbl_hap6	2910005	2910006	rs805303	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Systolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	6p21.33	BAT2, BAT5	rs805303-A	0.382	6E-6	(EA, initial)	0.368	[0.21-0.53] unit decrease	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
607	chr6_qbl_hap6	2910005	2910006	rs805303	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Diastolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	6p21.33	BAT2, BAT5	rs805303-A	0.382	4E-6	(EA, initial)	0.23	[0.13-0.33] unit decrease	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
607	chr6_qbl_hap6	2910005	2910006	rs805303	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Systolic blood pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	6p21.33	BAT2, BAT5	rs805303-A	0.3958	3E-6	(EA)	0.0174	unit decrease	Illumina [242296]	N
607	chr6_qbl_hap6	2910005	2910006	rs805303	21909115	Ehret GB	2011-09-11	Nature	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Systolic blood pressure	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	6p21.33	BAT2, BAT5	rs805303-G	0.61	2E-11		0.376	[NR] mmHg increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
607	chr6_qbl_hap6	2910005	2910006	rs805303	21909115	Ehret GB	2011-09-11	Nature	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Hypertension	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	6p21.33	BAT2, BAT5	rs805303-G	0.61	1E-10		0.054	[NR] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
607	chr6_qbl_hap6	2910005	2910006	rs805303	21909115	Ehret GB	2011-09-11	Nature	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Diastolic blood pressure	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	6p21.33	BAT2, BAT5	rs805303-G	0.61	3E-11		0.228	[NR] mmHg increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
607	chr6_qbl_hap6	2913769	2913770	rs2736201	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6p21.33	BAG6	rs2736201-C	0.156392	7E-12		0.036189657	[0.026-0.047] unit increase	Affymetrix [93095623] (imputed)	N
607	chr6_qbl_hap6	2913769	2913770	rs2736201	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	6p21.33	BAG6	rs2736201-C	0.156492	3E-71		0.06142095	[0.055-0.068] unit increase	Affymetrix [93095623] (imputed)	N
607	chr6_qbl_hap6	2914156	2914157	rs3117582	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Squamous cell lung carcinoma	8,350 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	6p21.33	NR	rs3117582-G	NR	2E-9		0.77	[0.71-0.84]	NR [NR] (imputed)	N
607	chr6_qbl_hap6	2914156	2914157	rs3117582	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Non-small cell lung cancer	27,120 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	6p21.33	NR	rs3117582-G	NR	2E-6		0.87	[0.82-0.92]	NR [NR] (imputed)	N
607	chr6_qbl_hap6	2914156	2914157	rs3117582	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p21.33	BAT3, APOM	rs3117582-C	0.34	1E-30				Illumina [118177]	N
607	chr6_qbl_hap6	2914156	2914157	rs3117582	19836008	Landi MT	2009-10-15	Am J Hum Genet	A genome-wide association study of lung cancer identifies a region of chromosome 5p15 associated with risk for adenocarcinoma.	Lung adenocarcinoma	5,739 European ancestry cases, 5,848 European ancestry controls	7,561 European ancestry cases, 13,818 European ancestry controls	6p21.33	APOM, BAT3	rs3117582-C	0.10	5E-12		1.22	[1.15-1.29]	Illumina [515922]	N
607	chr6_qbl_hap6	2914156	2914157	rs3117582	19654303	Broderick P	2009-08-04	Cancer Res	Deciphering the impact of common genetic variation on lung cancer risk: a genome-wide association study.	Lung cancer	1,952 European ancestry cases, 1,438 European ancestry controls	2,465 European ancestry cases, 3,005 European ancestry controls, 3,143 individuals, 3,762 individuals	6p21.33	BAT3	rs3117582-?	NR	4E-10		1.24	[1.16-1.33]	Illumina [511919]	N
607	chr6_qbl_hap6	2914156	2914157	rs3117582	18978787	Wang Y	2008-11-02	Nat Genet	Common 5p15.33 and 6p21.33 variants influence lung cancer risk.	Lung cancer	5,095 European ancestry cases, 5,200 European ancestry controls	2,448 European ancestry cases, 2,983 European ancestry controls	6p21.33	BAT3, MSH5	rs3117582-C	NR	5E-10		1.24	[1.16-1.33]	Illumina [223891]	N
607	chr6_qbl_hap6	2915679	2915680	rs1266078	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	APOM	rs1266078-G	0.032	3E-12	(Apolipoprotein M, APOM.10445.20.3)	0.49	[0.35-0.63] unit decrease	Affymetrix [10572788] (imputed)	N
607	chr6_qbl_hap6	2916242	2916243	rs805297	21844665	Hu HJ	2011-08-16	Exp Mol Med	Common variants at the promoter region of the APOM confer a risk of rheumatoid arthritis.	Rheumatoid arthritis	100 Korean ancestry cases, 600 Korean ancestry controls	578 Korean ancestry cases, 711 Korean ancestry controls	6p21.33	APOM	rs805297-A	0.36	3E-10		1.56	[1.36-1.80]	Affymetrix [300909]	N
607	chr6_qbl_hap6	2918101	2918102	rs113947529	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ISG15	5,349 Icelandic ancestry individuals	NA	6p21.33		rs113947529-T	0.01503	5E-16		0.622819	[0.47-0.77] unit decrease	Illumina [7506463] (imputed)	N
607	chr6_qbl_hap6	2921749	2921750	rs805263	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p21.33	C6orf47	rs805263-C	0.026972	3E-12		0.049836818	[0.036-0.064] unit increase	Affymetrix [93095623] (imputed)	N
607	chr6_qbl_hap6	2922033	2922034	rs148844907	33608531	Wu Y	2021-02-19	Nat Commun	GWAS of peptic ulcer disease implicates Helicobacter pylori infection, other gastrointestinal disorders and depression.	Inflammatory bowel disease	7,045 European ancestry cases, 449,282 European ancestry controls	NA	6p21.33	NR	rs148844907-T	0.99	1E-40		0.47	[NR]	NR [8546065] (imputed)	N
607	chr6_qbl_hap6	2922033	2922034	rs148844907	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p21.33	C6orf47	rs148844907-A	0.01	2E-12		1.92	[1.74-2.12]	Illumina [at least 560000] (imputed)	N
607	chr6_qbl_hap6	2922369	2922370	rs805262	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (mother's age at death or mother's attained age)	up to 699,000 individuals	NA	6p21.33	NR	rs805262-G		7E-7				Illumina [458525]	N
607	chr6_qbl_hap6	2924473	2924474	rs805260	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	GPANK1	rs805260-G	NR	8E-13		0.0307796	[0.022-0.039] unit decrease	Affymetrix [323123] (imputed)	N
607	chr6_qbl_hap6	2924976	2924977	rs76072474	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	6p21.33	NR	rs76072474-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
607	chr6_qbl_hap6	2924976	2924977	rs76072474	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	6p21.33	NR	rs76072474-?	NR	1E-11				Affymetrix [~ 8270000] (imputed)	N
607	chr6_qbl_hap6	2925776	2925777	rs3130618	25344690	Feenstra B	2014-10-26	Nat Genet	Common variants associated with general and MMR vaccine-related febrile seizures.	Febrile seizures (MMR vaccine-related)	929 European ancestry cases, 4,118 European ancestry controls	Up to 408 European ancestry cases, Up to 1,645 European ancestry controls	6p21.33	GPANK1	rs3130618-C	0.79	2E-7		1.34	[1.20-1.49]	Illumina [8129524] (imputed)	N
607	chr6_qbl_hap6	2925776	2925777	rs3130618	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.33	BAT4	rs3130618-A	0.1811	2E-56		3.03	[NR]	Illumina [242824]	N
607	chr6_qbl_hap6	2929585	2929586	rs115820082	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	CSNK2B, CSNK2B-LY6G5B-1181	rs115820082-G	NR	4E-12		0.0902636	[0.065-0.116] unit decrease	Affymetrix [321016] (imputed)	N
607	chr6_qbl_hap6	2929673	2929674	rs3117578	31375628	Tengvall K	2019-08-02	Proc Natl Acad Sci U S A	Molecular mimicry between Anoctamin 2 and Epstein-Barr virus nuclear antigen 1 associates with multiple sclerosis risk.	Anti-anoctamin 2 antibody levels	11,936 European ancestry individuals	NA	6p21.33	NR	rs3117578-A	NR	2E-7		0.063	[0.034-0.092] unit increase	Illumina [615763]	N
607	chr6_qbl_hap6	2930384	2930385	rs9267531	26316170	Demirci FY	2015-08-28	Arthritis Rheumatol	Identification of a New Susceptibility Locus for Systemic Lupus Erythematosus on Chromosome 12 in Individuals of European Ancestry.	Systemic lupus erythematosus	661 European ancestry cases, 487 European ancestry controls	4,467 European ancestry cases, 9,114 European ancestry controls	6p21.33	CSNK2B	rs9267531-?	NR	8E-8				Affymetrix [up to 700598]	N
607	chr6_qbl_hap6	2930384	2930385	rs9267531	25827949	Kunz M	2015-05-04	Exp Dermatol	Genome-wide association study identifies new susceptibility loci for cutaneous lupus erythematosus.	Cutaneous lupus erythematosus	151 European ancestry cases, 1,288 European ancestry controls	219 European ancestry cases, 262 European ancestry controls	6p21.33	CSNK2B, MSH5, MICA, MICB	rs9267531-G	0.1	3E-14		2.62	[1.93-3.54]	Affymetrix [906600]	N
607	chr6_qbl_hap6	2931820	2931821	rs805268	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p21.33		rs805268-A	0.969	9E-19				Affymetrix [10369434] (imputed)	N
607	chr6_qbl_hap6	2944832	2944833	rs9267536	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6p21.33	BAT5	rs9267536-?	NR	6E-6	(TAG 52:6)	0.34227857	[0.19-0.49] unit increase	Affymetrix [at least 2500000] (imputed)	N
607	chr6_qbl_hap6	2959101	2959102	rs805273	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	ABHD16A, XXbac-BPG32J3.20, MIR4646	rs805273-A	0.06820461	5E-16	(Complement C4)	0.699	[0.53-0.87] unit increase	Affymetrix [509946]	N
607	chr6_qbl_hap6	2959941	2959941	rs9281557	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.33	Intergenic	rs9281557-?	NR	2E-8		0.0260612	[0.017-0.035] unit decrease	Illumina [13520550] (imputed)	N
607	chr6_qbl_hap6	2959941	2959941	rs9281557	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.33	Intergenic	rs9281557-?	NR	2E-7	(women)	0.0341653	[0.021-0.047] unit decrease	Illumina [13520550] (imputed)	N
607	chr6_qbl_hap6	2959941	2959941	rs9281557	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	6p21.33	Intergenic	rs9281557-?	NR	1E-18		0.0471724	[0.037-0.058] unit decrease	Illumina [13520550] (imputed)	N
607	chr6_qbl_hap6	2963146	2963147	rs1266071	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	6p21.33	ABHD16A, XXbac-BPG32J3.20	rs1266071-T	0.107214	4E-14		0.027769113	[0.021-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
607	chr6_qbl_hap6	2965918	2965919	rs34406901	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	6p21.33	XXbac-BPG32J3.20	rs34406901-G	0.0566	7E-15		0.039119102	[0.029-0.049] unit increase	Affymetrix [93095623] (imputed)	N
607	chr6_qbl_hap6	2967084	2967085	rs9267546	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LIPA	5,367 Icelandic ancestry individuals	NA	6p21.33		rs9267546-A	0.08009	2E-15		0.274526	[0.21-0.34] unit increase	Illumina [7506463] (imputed)	N
607	chr6_qbl_hap6	2969400	2969401	rs2242653	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	6p21.33	NR	rs2242653-?	NR	3E-10	(MIC-A)	0.545677	[0.38-0.71] unit decrease	Illumina [11901634] (imputed)	N
607	chr6_qbl_hap6	2969620	2969621	rs9267548	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p21.33	NR	rs9267548-?	NR	5E-9		0.1189	[0.079-0.159] unit decrease	Illumina [at least 560000] (imputed)	N
607	chr6_qbl_hap6	2973101	2973102	rs805285	33941608	Khan A	2021-05-03	J Am Soc Nephrol	Medical Records-Based Genetic Studies of the Complement System.	Complement C4 levels	3,247 European ancestry individuals, 600 African ancestry individuals, 151 East Asian ancestry individuals	NA	6p21.33	C4	rs805285-C	0.32	1E-14		0.19	[0.15-0.22] unit increase	NR [NR] (imputed)	N
607	chr6_qbl_hap6	2973101	2973102	rs805285	33941608	Khan A	2021-05-03	J Am Soc Nephrol	Medical Records-Based Genetic Studies of the Complement System.	Complement C4 levels	3,247 European ancestry individuals, 600 African ancestry individuals, 151 East Asian ancestry individuals	NA	6p21.33	C4	rs805285-C	0.25	2E-10	(EA)	0.18	[0.14-0.22] unit increase	NR [NR] (imputed)	N
607	chr6_qbl_hap6	2980129	2980130	rs15574	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking initiation (ever regular vs never regular)	up to 433,216 European ancestry individuals	NA	6p21.33	LY6G6C	rs15574-A	0.194	7E-9		0.0159	[0.011-0.021] unit increase	Illumina [~ 250000] (imputed)	N
607	chr6_qbl_hap6	2981849	2981850	rs805294	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.33		rs805294-A	0.644	4E-13				Affymetrix [10369434] (imputed)	N
607	chr6_qbl_hap6	2982150	2982151	rs805293	31879980	German CA	2019-12-26	Genet Epidemiol	Ordered multinomial regression for genetic association analysis of ordinal phenotypes at Biobank scale.	Hypertension	30,822 British ancestry normal blood pressure individuals, 25,242 British ancestry elevated blood pressure individuals, 50,461 British ancestry stage 1 hypertension individuals, 75,286 British ancestry stage 2 hypertension individuals, 3,754 British ancestry hypertension crisis individuals	NA	6p21.33	MPIG6B	rs805293-?	NR	3E-12		0.0433015	NR unit decrease	Affymetrix [464137]	N
607	chr6_qbl_hap6	2982150	2982151	rs805293	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	6p21.33	NR	rs805293-A	0.46	8E-9		0.00643097	[0.0042-0.0086] unit decrease	NR [9732723] (imputed)	N
607	chr6_qbl_hap6	2985286	2985287	rs453098	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SEMA6C	5,362 Icelandic ancestry individuals	NA	6p21.33		rs453098-A	0.07505	1E-13		0.264219	[0.19-0.33] unit increase	Illumina [7506463] (imputed)	N
607	chr6_qbl_hap6	2985286	2985287	rs453098	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PCDHGA11	5,360 Icelandic ancestry individuals	NA	6p21.33		rs453098-A	0.07505	4E-12		0.237269	[0.17-0.3] unit increase	Illumina [7506463] (imputed)	N
607	chr6_qbl_hap6	2985286	2985287	rs453098	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HSPA1A	5,360 Icelandic ancestry individuals	NA	6p21.33		rs453098-A	0.07505	8E-15		0.272702	[0.2-0.34] unit increase	Illumina [7506463] (imputed)	N
607	chr6_qbl_hap6	2986015	2986016	rs11575845	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C6orf25	5,363 Icelandic ancestry individuals	NA	6p21.33		rs11575845-G	0.03386	7E-46		0.736966	[0.64-0.84] unit decrease	Illumina [7506463] (imputed)	N
607	chr6_qbl_hap6	2986015	2986016	rs11575845	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6p21.33		rs11575845-?	NR	4E-7		0.890554	[0.85-0.94]	NR [685523]	N
607	chr6_qbl_hap6	2986015	2986016	rs11575845	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	6p21.33	C6orf25	rs11575845-G	0.06333	6E-27		0.05543542	[0.045-0.066] unit increase	Affymetrix [93095623] (imputed)	N
607	chr6_qbl_hap6	2991016	2991017	rs805305	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C6orf25	5,363 Icelandic ancestry individuals	NA	6p21.33		rs805305-G	0.32	4E-22		0.196057	[0.16-0.24] unit increase	Illumina [7506463] (imputed)	N
607	chr6_qbl_hap6	2991187	2991188	rs707916	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling nervous	373,121 European ancestry individuals	NA	6p21.33	CCHCR1	rs707916-A	0.365563	2E-13		7.35	z score decrease	NR [10847151] (imputed)	N
607	chr6_qbl_hap6	2998048	2998049	rs115204832	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ISG15	5,349 Icelandic ancestry individuals	NA	6p21.33		rs115204832-G	0.01432	1E-183		2.1193	[1.98-2.26] unit decrease	Illumina [7506463] (imputed)	N
607	chr6_qbl_hap6	2998048	2998049	rs115204832	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C2	5,363 Icelandic ancestry individuals	NA	6p21.33		rs115204832-G	0.01432	1E-282		2.53186	[2.39-2.67] unit decrease	Illumina [7506463] (imputed)	N
607	chr6_qbl_hap6	2998763	2998764	rs145269503	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	6p21.33	CLIC1	rs145269503-A	0.0221	3E-36		0.1547004	[0.13-0.18] unit decrease	Affymetrix [~ 2500000] (imputed)	N
607	chr6_qbl_hap6	3000485	3000486	rs2736154	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		6p21.33	CLIC1	rs2736154-A	0.790274	4E-8		0.0109563	[0.007-0.0149] unit increase	Affymetrix [12370749]	N
607	chr6_qbl_hap6	3000487	3000488	rs396369	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	6p21.33		rs396369-T	NR	2E-15		0.0202	[0.015-0.025] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
607	chr6_qbl_hap6	3001163	3001164	rs28381344	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	6p21.33	NR	rs28381344-A	0.0438845616860758	1E-8		0.020618176	[0.014-0.028] unit increase	NR [NR]	N
607	chr6_qbl_hap6	3001163	3001164	rs28381344	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	6p21.33	NR	rs28381344-A	0.0438845616860758	1E-8		0.013281214	[0.0087-0.0179] unit increase	NR [NR]	N
607	chr6_qbl_hap6	3001163	3001164	rs28381344	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Strep throat	52,487 European ancestry cases, 22,017 European ancestry controls	NA	6p21.33	NR	rs28381344-?	NR	1E-6		0.0694	[0.041-0.098] unit decrease	Illumina [at least 560000] (imputed)	N
607	chr6_qbl_hap6	3001367	3001368	rs3131382	32752121	Nedoszytko B	2020-07-31	Int J Mol Sci	Results from a Genome-Wide Association Study (GWAS) in Mastocytosis Reveal New Gene Polymorphisms Associated with WHO Subgroups.	Systemic mastocytosis	93 European ancestry cases, 5,606 European ancestry controls	NA	6p21.33	MSH5	rs3131382-A	0.03194	9E-7		3.247	[2.75-3.74]	Illumina [281811]	N
607	chr6_qbl_hap6	3001367	3001368	rs3131382	32752121	Nedoszytko B	2020-07-31	Int J Mol Sci	Results from a Genome-Wide Association Study (GWAS) in Mastocytosis Reveal New Gene Polymorphisms Associated with WHO Subgroups.	Mastocytosis	234 European ancestry cases, 5,606 European ancestry controls	NA	6p21.33	MSH5	rs3131382-A	0.03194	3E-8		2.602	[2.25-2.95]	Illumina [281811]	N
607	chr6_qbl_hap6	3001784	3001785	rs409558	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	CLIC1, MSH5-SAPCD1, MSH5, SAPCD1-AS1, RNU6-850P, SAPCD1, VARS, VWA7	rs409558-C	0.1591365	1E-10	(EA, Complement C4)	0.3861	[0.27-0.5] unit increase	Affymetrix [509946]	N
607	chr6_qbl_hap6	3001784	3001785	rs409558	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Systolic blood pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	154,543 European ancestry individuals, 26,183 South Asian ancestry individuals	6p21.33	MSH5, SAPCD1	rs409558-G	0.176	6E-8		0.33	[0.21-0.45] unit decrease	Illumina [247039]	N
607	chr6_qbl_hap6	3001784	3001785	rs409558	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Pulse pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	154,543 European ancestry individuals, 26,183 South Asian ancestry individuals	6p21.33	MSH5, SAPCD1	rs409558-G	0.176	3E-9		0.26	[0.18-0.34] unit decrease	Illumina [247039]	N
607	chr6_qbl_hap6	3002547	3002548	rs28381348	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p21.33	MSH5	rs28381348-C	0.04	5E-6	(EA)	2.81	[1.77-4.47]	Illumina [up to 547389]	N
607	chr6_qbl_hap6	3002988	3002989	rs1144709	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	6p21.33	Intergenic	rs1144709-T	0.2281	3E-10	(MTAG)	0.0134	[0.0093-0.0175] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
607	chr6_qbl_hap6	3002988	3002989	rs1144709	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	6p21.33	Intergenic	rs1144709-C	0.7719	6E-9		0.0135	[0.009-0.018] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
607	chr6_qbl_hap6	3002988	3002989	rs1144709	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	6p21.33	Intergenic	rs1144709-C	0.7725	3E-10		0.017	[0.012-0.022] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
607	chr6_qbl_hap6	3003742	3003743	rs28381350	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	6p21.33	PRRC2A	rs28381350-A	0.1297	5E-9	(S1P d16:1)	0.1104	[0.073-0.147] unit decrease	Illumina [~ 47000000] (imputed)	N
607	chr6_qbl_hap6	3007089	3007090	rs3828922	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	CLIC1, MSH5-SAPCD1, MSH5, SAPCD1-AS1, RNU6-850P, SAPCD1, VARS, VWA7	rs3828922-T	0.1584754	2E-19	(EA, MHC class I polypeptide-related sequence A)	0.5315	[0.42-0.64] unit decrease	Affymetrix [509946]	N
607	chr6_qbl_hap6	3011333	3011334	rs3117572	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MSH5, MSH5-SAPCD1	rs3117572-A	NR	2E-9		0.023199	[0.016-0.031] unit increase	Affymetrix [323123] (imputed)	N
607	chr6_qbl_hap6	3011333	3011334	rs3117572	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	MSH5, MSH5-SAPCD1	rs3117572-A	NR	7E-10		0.0221723	[0.015-0.029] unit decrease	Affymetrix [321169] (imputed)	N
608	chr6_qbl_hap6	3014676	3014677	rs3131379	26316170	Demirci FY	2015-08-28	Arthritis Rheumatol	Identification of a New Susceptibility Locus for Systemic Lupus Erythematosus on Chromosome 12 in Individuals of European Ancestry.	Systemic lupus erythematosus	661 European ancestry cases, 487 European ancestry controls	4,467 European ancestry cases, 9,114 European ancestry controls	6p21.33	MSH5	rs3131379-?	NR	8E-8				Affymetrix [up to 700598]	N
608	chr6_qbl_hap6	3014676	3014677	rs3131379	18204446	Harley JB	2008-01-20	Nat Genet	Genome-wide association scan in women with systemic lupus erythematosus identifies susceptibility variants in ITGAM, PXK, KIAA1542 and other loci.	Systemic lupus erythematosus	720 European ancestry female cases, 2,337 European ancestry female controls	1,846 European ancestry female cases, 1,825 European ancestry female controls	6p21.33	HLA region	rs3131379-A	0.1	2E-52		2.36	[2.11-2.64]	Illumina [317501]	N
608	chr6_qbl_hap6	3016424	3016425	rs3130486	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (anilides)	83,218 European ancestry cases, 96,592 European ancestry controls	NA	6p21.33	MSH5	rs3130486-T	0.265164	1E-13		0.05492751	[0.04-0.069] unit decrease	Affymetrix [7288503] (imputed)	N
608	chr6_qbl_hap6	3018925	3018926	rs3131378	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	6p21.33	MSH5-SAPCD1	rs3131378-G	0.098896646	3E-18		1.1810031	[1.137601617-1.226060343]	Illumina [10439017] (imputed)	N
608	chr6_qbl_hap6	3020329	3020330	rs707939	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MSH5, MSH5-SAPCD1	rs707939-A	NR	4E-10		0.0204551	[0.014-0.027] unit decrease	Affymetrix [323123] (imputed)	N
608	chr6_qbl_hap6	3020329	3020330	rs707939	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.33	ABHD16A, AIF1, APOM, BAG6, C2, C2-AS1, C4A, C4B, C4B_2, C6orf25, C6orf47, C6orf48, CFB, CLIC1, CSNK2B, CYP21A1P, CYP21A2, DDAH2, DXO, EHMT2, GPANK1, HSPA1A, HSPA1B, HSPA1L, LSM2, LY6G5B, LY6G5C, LY6G6C, LY6G6D, LY6G6E, LY6G6F, MIR1236, MIR4646, MIR6832, MSH5, MSH5-SAPCD1, NELFE, NEU1, PRRC2A, SAPCD1, SAPCD1-AS1, SKIV2L, SLC44A4, SNORA38, SNORD48, SNORD52, STK19, TNXA, TNXB, VARS, VWA7, ZBTB12	rs707939-A		4E-12		1.07	[1.05-1.09]	Affymetrix, Illumina [NR]	N
608	chr6_qbl_hap6	3020491	3020492	rs17207524	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	6p21.33	MSH5	rs17207524-T	0.06447	3E-8		1.09	NR	Affymetrix [9154080] (imputed)	N
608	chr6_qbl_hap6	3020491	3020492	rs17207524	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs17207524-G	0.96171875	3E-9	(TGM3, 4471_50_2)	0.3747752	[0.25-0.5] unit increase	Illumina [> 1000000] (imputed)	N
608	chr6_qbl_hap6	3020491	3020492	rs17207524	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs17207524-G	0.96171875	1E-31	(G6B, 7065_1_4)	0.7349115	[0.61-0.86] unit increase	Illumina [> 1000000] (imputed)	N
608	chr6_qbl_hap6	3020491	3020492	rs17207524	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs17207524-G	0.96171875	1E-14	(C4A C4B, 4481_34_2)	0.5052215	[0.38-0.63] unit decrease	Illumina [> 1000000] (imputed)	N
608	chr6_qbl_hap6	3021538	3021539	rs3115672	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Squamous cell lung carcinoma	8,350 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	6p21.33	NR	rs3115672-T	NR	2E-8		1.28	[1.17-1.39]	NR [NR] (imputed)	N
608	chr6_qbl_hap6	3021538	3021539	rs3115672	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Non-small cell lung cancer	27,120 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	6p21.33	NR	rs3115672-T	NR	4E-6		1.15	[1.08-1.22]	NR [NR] (imputed)	N
608	chr6_qbl_hap6	3021538	3021539	rs3115672	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	6p21.33	NR	rs3115672-T	0.113634053654599	4E-15		0.014519162	[0.011-0.018] unit decrease	NR [NR]	N
608	chr6_qbl_hap6	3021538	3021539	rs3115672	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	6p21.33	NR	rs3115672-T	0.113634053654599	6E-15		0.018733539	[0.014-0.023] unit decrease	NR [NR]	N
608	chr6_qbl_hap6	3021538	3021539	rs3115672	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	6p21.33	NR	rs3115672-T	0.113634053654599	5E-14		0.015431175	[0.011-0.019] unit decrease	NR [NR]	N
608	chr6_qbl_hap6	3021538	3021539	rs3115672	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	6p21.33	NR	rs3115672-T	0.113634053654599	2E-15		0.0121121025	[0.0091-0.0151] unit decrease	NR [NR]	N
608	chr6_qbl_hap6	3021630	3021631	rs61748589	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C4A;C4B	5,362 Icelandic ancestry individuals	NA	6p21.33		rs61748589-G	0.01635	1E-9		0.440324	[0.3-0.58] unit decrease	Illumina [7506463] (imputed)	N
608	chr6_qbl_hap6	3021908	3021909	rs2075801	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	CLIC1, MSH5-SAPCD1, MSH5, SAPCD1-AS1, RNU6-850P, SAPCD1, VARS, VWA7	rs2075801-A	0.1582915	8E-15	(EA, gp41 C34 peptide, HIV)	0.4506	[0.34-0.56] unit increase	Affymetrix [509946]	N
608	chr6_qbl_hap6	3023000	3023001	rs707938	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	6p21.33	NR	rs707938-A	0.319085	5E-9		0.039337814	[0.026-0.053] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
608	chr6_qbl_hap6	3023000	3023001	rs707938	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	6p21.33	Intergenic	rs707938-A	0.6802	4E-9		0.018	[0.012-0.024] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
608	chr6_qbl_hap6	3023000	3023001	rs707938	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p21.33	NR	rs707938-?	NR	9E-7		4.905	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
608	chr6_qbl_hap6	3023000	3023001	rs707938	29773799	Horikoshi M	2018-05-17	Nat Commun	Elucidating the genetic architecture of reproductive ageing in the Japanese population.	Menarche (age at onset)	67,029 Japanese ancestry women	73,397 European ancestry women	6p21.33	NR	rs707938-A	0.5873	1E-12	(japanese)	0.189	[0.14-0.24] year increase	Illumina [at least 532488] (imputed)	N
608	chr6_qbl_hap6	3023000	3023001	rs707938	26414677	Day FR	2015-11-01	Nat Genet	Large-scale genomic analyses link reproductive aging to hypothalamic signaling, breast cancer susceptibility and BRCA1-mediated DNA repair.	Menopause (age at onset)	up to 69,626 European ancestry women	NA	6p21.33	MSH5, HLA	rs707938-G	0.32	7E-15		0.17	[0.13-0.21] years decrease	Affymetrix, Illumina [~ 2600000] (imputed)	N
608	chr6_qbl_hap6	3052576	3052577	rs6899983	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Aspartate aminotransferase levels in low alcohol consumption	8,716 individuals	NA	6p21.33	NR	rs6899983-?	NR	2E-7		0.1467	[0.092-0.202] unit increase	Illumina [~ 7800000] (imputed)	N
608	chr6_qbl_hap6	3054708	3054709	rs9469054	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	6p21.33	VARS	rs9469054-A	0.0247	1E-20		0.1068719	[0.084-0.129] unit increase	Affymetrix [~ 2500000] (imputed)	N
608	chr6_qbl_hap6	3055510	3055511	rs3115670	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	6p21.33	VARS	rs3115670-T	NR	1E-19		0.0626938	[0.049-0.076] unit decrease	Illumina [13520550] (imputed)	N
608	chr6_qbl_hap6	3056488	3056489	rs2607015	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	VARS	rs2607015-C	NR	5E-12		0.0196764	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
608	chr6_qbl_hap6	3056488	3056489	rs2607015	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	VARS	rs2607015-C	NR	3E-8		0.0175576	[0.011-0.024] unit increase	Affymetrix [323858] (imputed)	N
608	chr6_qbl_hap6	3056488	3056489	rs2607015	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	VARS	rs2607015-C	NR	4E-11		0.0188809	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
608	chr6_qbl_hap6	3056489	3056490	rs2753960	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	VARS	rs2753960-T	NR	1E-8		0.0161747	[0.011-0.022] unit decrease	Affymetrix [321016] (imputed)	N
608	chr6_qbl_hap6	3056489	3056490	rs2753960	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	VARS	rs2753960-T	NR	3E-11		0.0207398	[0.015-0.027] unit decrease	Affymetrix [323123] (imputed)	N
608	chr6_qbl_hap6	3056489	3056490	rs2753960	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	VARS	rs2753960-T	NR	3E-14		0.0219625	[0.016-0.028] unit increase	Affymetrix [321169] (imputed)	N
608	chr6_qbl_hap6	3056489	3056490	rs2753960	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	6p21.33	VARS	rs2753960-T	0.4128	2E-14		0.02776258	[0.021-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
608	chr6_qbl_hap6	3059507	3059508	rs1144710	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	6p21.33	LSM2	rs1144710-T	NR	2E-11		0.192529	[0.14-0.25] unit increase	Illumina [at least 950000] (imputed)	N
608	chr6_qbl_hap6	3059507	3059508	rs1144710	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA	6p21.33	NR	rs1144710-?	NR	6E-6		0.0474	[0.027-0.068] unit increase	Illumina [at least 560000] (imputed)	N
608	chr6_qbl_hap6	3059507	3059508	rs1144710	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p21.33	NR	rs1144710-?	NR	2E-10		0.0847	[0.059-0.111] unit increase	Illumina [at least 560000] (imputed)	N
608	chr6_qbl_hap6	3071334	3071335	rs34636308	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	6p21.33	NR	rs34636308-?	NR	5E-14		7.528	NR z score decrease	Illumina [at least 830937] (imputed)	N
608	chr6_qbl_hap6	3071724	3071725	rs2227955	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	C6orf48, HSPA1L, LSM2, HSPA1A, SNORD52, SNORD48, NEU1, SLC44A4	rs2227955-G	0.02306921	4E-9	(EA, gp41 C34 peptide, HIV)	0.8484	[0.57-1.13] unit increase	Affymetrix [509946]	N
608	chr6_qbl_hap6	3071724	3071725	rs2227955	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	C6orf48, HSPA1L, LSM2, HSPA1A, SNORD52, SNORD48, NEU1, SLC44A4	rs2227955-G	0.02306921	4E-13	(EA, Neutrophil collagenase)	1.024	[0.75-1.3] unit increase	Affymetrix [509946]	N
608	chr6_qbl_hap6	3071919	3071920	rs2227956	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CCL19	5,367 Icelandic ancestry individuals	NA	6p21.33		rs2227956-G	0.2402	7E-14		0.167141	[0.12-0.21] unit increase	Illumina [7506463] (imputed)	N
608	chr6_qbl_hap6	3072176	3072177	rs2075799	23028341	Yang X	2012-09-13	PLoS Genet	Genome-wide association study for serum complement C3 and C4 levels in healthy Chinese subjects.	Complement C3 and C4 levels	1,999 Han Chinese ancestry male individuals	1,496 Han Chinese ancestry male individuals	6p21.33	C4	rs2075799-T	0.20	6E-97	(Serum level of C4)	0.17	[0.15-0.19] g/L decrease	Illumina [1940245] (imputed)	N
608	chr6_qbl_hap6	3073886	3073887	rs115333512	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL36A	5,364 Icelandic ancestry individuals	NA	6p21.33		rs115333512-T	0.07275	7E-16		0.295426	[0.22-0.37] unit decrease	Illumina [7506463] (imputed)	N
608	chr6_qbl_hap6	3075604	3075605	rs12213612	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p21.33	NR	rs12213612-?	NR	1E-8		0.1635	[0.11-0.22] unit increase	Illumina [at least 560000] (imputed)	N
608	chr6_qbl_hap6	3077153	3077154	rs1043618	32589924	Bi W	2020-06-23	Am J Hum Genet	A Fast and Accurate Method for Genome-Wide Time-to-Event Data Analysis and Its Application to UK Biobank.	Cataract (time to event)	22,635 British ancestry cases, 260,236 British ancestry controls	NA	6p21.33	HSPA1A46	rs1043618-?	NR	4E-8				NR [~ 24000000] (imputed)	N
608	chr6_qbl_hap6	3078874	3078875	rs506770	34642315	Ferreiro-Iglesias A	2021-10-12	Nat Commun	Germline determinants of humoral immune response to HPV-16 protect against oropharyngeal cancer.	Oropharynx cancer and human papilloma virus 16 negative oropharyngeal cancer	2,359 European ancestry cases, 565 European ancestry controls	NA	6p21.33		rs506770-C	NR	2E-6		1.2434		Illumina [up to 7574753] (imputed)	N
608	chr6_qbl_hap6	3080011	3080012	rs17201192	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.33	HSPA1L	rs17201192-T	0.023301	2E-14		0.058121365	[0.043-0.073] unit increase	Affymetrix [93095623] (imputed)	N
608	chr6_qbl_hap6	3080609	3080610	rs2763977	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HSPA1A	rs2763977-A	NR	2E-10		0.028855	[0.02-0.038] unit increase	Affymetrix [319769] (imputed)	N
608	chr6_qbl_hap6	3080609	3080610	rs2763977	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HSPA1A	rs2763977-A	NR	4E-10		0.0284684	[0.02-0.037] unit increase	Affymetrix [319769] (imputed)	N
608	chr6_qbl_hap6	3083034	3083034	rs139759813	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HSPA1A	rs139759813-GA	NR	2E-9		0.0236752	[0.016-0.031] unit decrease	Affymetrix [127266] (imputed)	N
608	chr6_qbl_hap6	3088242	3088243	rs2763979	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)(bidirectional)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.33		rs2763979-C	NR	2E-14				Affymetrix [7846216] (imputed)	N
608	chr6_qbl_hap6	3088242	3088243	rs2763979	32771030	Tangtanatakul P	2020-08-08	Arthritis Res Ther	Meta-analysis of genome-wide association study identifies FBN2 as a novel locus associated with systemic lupus erythematosus in Thai population.	Systemic lupus erythematosus	487 Thai cases, 1,606 Thai controls	405 Thai cases, 1,590 Thai controls	6p21.33	HSPA1A, HSPA1B	rs2763979-A	0.36	6E-6		1.2994	[NR]	Illumina [421909] (imputed)	N
608	chr6_qbl_hap6	3092731	3092732	rs3115674	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.33	NR	rs3115674-T	0.983	1E-8		0.652	[0.51-0.8]	Illumina [11270530] (imputed)	N
608	chr6_qbl_hap6	3093008	3093009	rs34278010	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs34278010-G	0.977	3E-44				Affymetrix [10369434] (imputed)	N
608	chr6_qbl_hap6	3094524	3094525	rs2471980	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Prostate cancer	7,438 White British ancestry cases, 118,206 White British ancestry controls	NA	6p21.33		rs2471980-?	NR	2E-6		0.915623	[0.88-0.95]	NR [680312]	N
608	chr6_qbl_hap6	3096123	3096124	rs4711279	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs4711279-C	0.824607758652095	1E-6	(IGP41)	0.1858	[0.11-0.26] unit decrease	Illumina [~ 2500000] (imputed)	N
608	chr6_qbl_hap6	3096123	3096124	rs4711279	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs4711279-C	0.824401248864668	4E-6	(IGP1)	0.1774	[0.1-0.25] unit decrease	Illumina [~ 2500000] (imputed)	N
608	chr6_qbl_hap6	3096123	3096124	rs4711279	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs4711279-C	0.823257144469526	3E-7	(IGP19)	0.1964	[0.12-0.27] unit decrease	Illumina [~ 2500000] (imputed)	N
608	chr6_qbl_hap6	3096199	3096200	rs9368699	20041166	Fellay J	2009-12-24	PLoS Genet	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	6p21.33	SNORD52	rs9368699-?	NR	5E-8	(progression)			Illumina [NR]	N
608	chr6_qbl_hap6	3096721	3096722	rs763298451	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	C6orf48, SNORD48	rs763298451-CT	NR	1E-12		0.0394762	[0.029-0.05] unit increase	Affymetrix [323123] (imputed)	N
608	chr6_qbl_hap6	3096787	3096788	rs17201248	26151496	Chen PL	2015-07-07	Nat Commun	Genetic determinants of antithyroid drug-induced agranulocytosis by human leukocyte antigen genotyping and genome-wide association study.	Thionamide-induced agranulocytosis in Graves' disease	21 East Asian ancestry cases with agranulocytosis, 662 East Asian ancestry cases without agranulocytosis	21 East Asian ancestry cases with agranulocytosis, 546 East Asian ancestry cases without agranulocytosis	6p21.33	HLA	rs17201248-T	0.092	3E-7	(trend)	3.48	[2.09-5.81] (allelic)	Affymetrix [522980]	N
608	chr6_qbl_hap6	3098384	3098385	rs11968400	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	6p21.33	C6orf48	rs11968400-?	NR	6E-12		0.0655868	[0.047-0.084] unit increase	Illumina [4804024] (imputed)	N
608	chr6_qbl_hap6	3099255	3099256	rs115487693	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	6p21.33	C6orf48	rs115487693-C	0.0445	4E-21		0.08313974	[0.066-0.1] unit decrease	Affymetrix [~ 2500000] (imputed)	N
608	chr6_qbl_hap6	3102086	3102087	rs599707	29904099	Kottyan LC	2018-06-08	Genes Immun	Genetic variants at the 16p13 locus confer risk for eosinophilic esophagitis.	Eosinophilic esophagitis	1,210 European ancestry cases, 3,734 European ancestry controls	NA	6p21.33	C6orf48, HSPA1B	rs599707-?	0.886	3E-9		1.6920472		Illumina [79405]	N
608	chr6_qbl_hap6	3102378	3102379	rs117217736	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.33	NR	rs117217736-T	0.991	1E-12		0.479	[0.28-0.68]	Illumina [11270530] (imputed)	N
608	chr6_qbl_hap6	3103767	3103770	rs74887990	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	6p21.33	C6orf48	rs74887990-T	0.0231	6E-16		0.063891105	[0.048-0.079] unit increase	Affymetrix [93095623] (imputed)	N
608	chr6_qbl_hap6	3105212	3105213	rs3130479	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	C6orf48	rs3130479-A	NR	2E-10		0.0294674	[0.02-0.038] unit increase	Affymetrix [321169] (imputed)	N
608	chr6_qbl_hap6	3105687	3105688	rs9267576	31375628	Tengvall K	2019-08-02	Proc Natl Acad Sci U S A	Molecular mimicry between Anoctamin 2 and Epstein-Barr virus nuclear antigen 1 associates with multiple sclerosis risk.	Anti-anoctamin 2 antibody levels	11,936 European ancestry individuals	NA	6p21.33	NR	rs9267576-A	NR	2E-8		0.07	[0.041-0.099] unit increase	Illumina [615763]	N
608	chr6_qbl_hap6	3106621	3106622	rs144527861	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	6p21.33	PRRC2A	rs144527861-A	0.1297	2E-9	(S1P d16:1)	0.115	[0.078-0.152] unit decrease	Illumina [~ 47000000] (imputed)	N
608	chr6_qbl_hap6	3109709	3109710	rs28732162	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p21.33	NR	rs28732162-?	NR	7E-17		0.1769	[0.14-0.22] unit increase	Illumina [at least 560000] (imputed)	N
608	chr6_qbl_hap6	3111758	3111759	rs9267578	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	NEU1	rs9267578-T	NR	6E-10		0.025611	[0.018-0.034] unit decrease	Affymetrix [319769] (imputed)	N
608	chr6_qbl_hap6	3114295	3114296	rs2736429	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling nervous	373,121 European ancestry individuals	NA	6p21.33	NR	rs2736429-A	0.384863	6E-12		6.89	z score increase	NR [10847151] (imputed)	N
608	chr6_qbl_hap6	3114834	3114835	rs370025470	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	6p21.33	NEU1	rs370025470-C	0.030144	3E-16		0.056601908	[0.043-0.07] unit increase	Affymetrix [93095623] (imputed)	N
608	chr6_qbl_hap6	3115720	3115721	rs35745547	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	NEU1	rs35745547-A	NR	1E-9		0.0190063	[0.013-0.025] unit increase	Affymetrix [321169] (imputed)	N
608	chr6_qbl_hap6	3116405	3116406	rs9267647	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	6p21.33	NEU1	rs9267647-T	0.132946	4E-11		0.022519508	[0.016-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
608	chr6_qbl_hap6	3117046	3117047	rs115310850	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.33	NR	rs115310850-A	0.01	2E-11		0.616842	[0.44-0.8] unit increase	Affymetrix [up to 8900000] (imputed)	N
608	chr6_qbl_hap6	3118702	3118703	rs9267650	27539887	Chahal HS	2016-08-19	Nat Commun	Genome-wide association study identifies 14 novel risk alleles associated with basal cell carcinoma.	Basal cell carcinoma	12.945 European ancestry cases, 274,252 European ancestry controls	4,242 European ancestry cases, 12,802 European ancestry controls	6p21.33	NEU1	rs9267650-T	0.05	1E-8		1.17	[NR]	Illumina [at least 560000] (imputed)	N
608	chr6_qbl_hap6	3120495	3120496	rs622076	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C2	5,363 Icelandic ancestry individuals	NA	6p21.33		rs622076-A	0.1077	2E-23		0.300008	[0.24-0.36] unit increase	Illumina [7506463] (imputed)	N
608	chr6_qbl_hap6	3120495	3120496	rs622076	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	6p21.33	NEU1	rs622076-A	0.1361	3E-14	(discovery)	0.0035	[0.0025-0.0045] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
608	chr6_qbl_hap6	3121076	3121077	rs13118	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6p21.33	SLC44A4	rs13118-?	NR	5E-6	(TAG 52:6)	0.3502205	[0.2-0.5] unit increase	Affymetrix [at least 2500000] (imputed)	N
608	chr6_qbl_hap6	3128953	3128954	rs74290525	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	NA	6p21.33	SLC44A4	rs74290525-G		1E-12	(conditional)	2.06	[NR]	Illumina [> 644674] (imputed)	N
608	chr6_qbl_hap6	3128955	3128956	rs693906	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	6p21.33		rs693906-C	NR	2E-33		0.029	[0.024-0.034] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
608	chr6_qbl_hap6	3128955	3128956	rs693906	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Scarlet fever	6,812 European ancestry cases, 113,837 European ancestry controls	NA	6p21.33	NR	rs693906-?	NR	7E-6		0.1149	[0.065-0.164] unit decrease	Illumina [at least 560000] (imputed)	N
608	chr6_qbl_hap6	3130234	3130235	rs542418	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.33	NR	rs542418-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
608	chr6_qbl_hap6	3130234	3130235	rs542418	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	6p21.33	NR	rs542418-?	NR	3E-6		0.0552	[0.032-0.078] unit increase	Illumina [at least 560000] (imputed)	N
608	chr6_qbl_hap6	3130615	3130616	rs521977	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	SLC44A4	rs521977-T	NR	9E-19		0.0294152	[0.023-0.036] unit decrease	Affymetrix [323858] (imputed)	N
608	chr6_qbl_hap6	3130615	3130616	rs521977	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	SLC44A4	rs521977-T	NR	3E-16		0.0271844	[0.021-0.034] unit decrease	Affymetrix [127266] (imputed)	N
608	chr6_qbl_hap6	3130615	3130616	rs521977	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Perceived unattractiveness to mosquitoes	16,576 European ancestry individuals	NA	6p21.33	SLC44A4	rs521977-T	0.276	4E-7		0.131107	[0.08-0.182] unit increase	Illumina [7433384] (imputed)	N
608	chr6_qbl_hap6	3130615	3130616	rs521977	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	6p21.33	SLC44A4	rs521977-T	NR	9E-7		0.0192183	[0.012-0.027] unit increase	Illumina [13519193] (imputed)	N
608	chr6_qbl_hap6	3130615	3130616	rs521977	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	6p21.33	SLC44A4	rs521977-T	NR	4E-20		0.0380858	[0.03-0.046] unit increase	Illumina [13520550] (imputed)	N
608	chr6_qbl_hap6	3130854	3130855	rs11966200	20526339	Quan C	2010-06-06	Nat Genet	Genome-wide association study for vitiligo identifies susceptibility loci at 6q27 and the MHC.	Vitiligo	1,117 Han Chinese ancestry cases, 1,429 Han Chinese ancestry controls	6,623 East Asian ancestry cases, 10,740 East Asian ancestry controls	6p21.33	HLA-C, HLA-B	rs11966200-A	0.06	1E-48		1.9	[1.74-2.07]	Illumina [493909]	N
608	chr6_qbl_hap6	3131065	3131066	rs660550	31837886	Kennedy OJ	2019-12-02	Am J Kidney Dis	Coffee Consumption and Kidney Function: A Mendelian Randomization Study.	Coffee consumption (cups per day)	227,666 British ancestry individuals	NA	6p21.33	SLC44A4	rs660550-A	0.525	8E-9		0.034	NR cups per day decrease	NR [NR]	N
608	chr6_qbl_hap6	3131751	3131752	rs577272	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs577272-G	NR	6E-9		0.0164512	[0.011-0.022] unit decrease	Affymetrix [321114] (imputed)	N
608	chr6_qbl_hap6	3131751	3131752	rs577272	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs577272-G	NR	1E-21		0.0272058	[0.022-0.033] unit decrease	Affymetrix [321169] (imputed)	N
608	chr6_qbl_hap6	3131751	3131752	rs577272	27286809	Ligthart S	2016-06-10	BMC Genomics	Bivariate genome-wide association study identifies novel pleiotropic loci for lipids and inflammation.	C-reactive protein levels or total cholesterol levels (pleiotropy)	65,000 individuals (C-reactive protein), 100,184 individuals (total cholesterol)	NA	6p21.33	SLC44A4	rs577272-A	NR	2E-8				NR [2501549] (imputed)	N
608	chr6_qbl_hap6	3132278	3132279	rs644774	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs644774-C	NR	4E-22		0.0271946	[0.022-0.033] unit decrease	Affymetrix [319769] (imputed)	N
608	chr6_qbl_hap6	3132278	3132279	rs644774	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs644774-C	NR	6E-21		0.0263821	[0.021-0.032] unit decrease	Affymetrix [319769] (imputed)	N
608	chr6_qbl_hap6	3132278	3132279	rs644774	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs644774-C	NR	2E-13		0.0206859	[0.015-0.026] unit increase	Affymetrix [321016] (imputed)	N
608	chr6_qbl_hap6	3132501	3132502	rs494620	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs494620-A	NR	1E-13		0.0214886	[0.016-0.027] unit increase	Affymetrix [319769] (imputed)	N
608	chr6_qbl_hap6	3132501	3132502	rs494620	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	SLC44A4	rs494620-A	NR	4E-10		0.0201809	[0.014-0.026] unit increase	Affymetrix [323858] (imputed)	N
608	chr6_qbl_hap6	3132501	3132502	rs494620	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs494620-A	NR	6E-13		0.0208264	[0.015-0.027] unit increase	Affymetrix [319769] (imputed)	N
608	chr6_qbl_hap6	3132501	3132502	rs494620	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	SLC44A4	rs494620-A	NR	6E-9		0.0187173	[0.012-0.025] unit increase	Affymetrix [127266] (imputed)	N
608	chr6_qbl_hap6	3132501	3132502	rs494620	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs494620-A	NR	7E-16		0.0236685	[0.018-0.029] unit increase	Affymetrix [321169] (imputed)	N
608	chr6_qbl_hap6	3132501	3132502	rs494620	19448619	Stolk L	2009-05-15	Nat Genet	Loci at chromosomes 13, 19 and 20 influence age at natural menopause.	Menopause (age at onset)	2,979 European ancestry female individuals	2,560 European ancestry female individuals	6p21.33	NR	rs494620-?	NR	5E-7		0.3	[0.18-0.42] years increase	Illumina [315418]	N
608	chr6_qbl_hap6	3133570	3133571	rs3130482	31879980	German CA	2019-12-26	Genet Epidemiol	Ordered multinomial regression for genetic association analysis of ordinal phenotypes at Biobank scale.	Hypertension	30,822 British ancestry normal blood pressure individuals, 25,242 British ancestry elevated blood pressure individuals, 50,461 British ancestry stage 1 hypertension individuals, 75,286 British ancestry stage 2 hypertension individuals, 3,754 British ancestry hypertension crisis individuals	NA	6p21.33	SLC44A4	rs3130482-?	NR	1E-10		0.03993774	NR unit increase	Affymetrix [464137]	N
608	chr6_qbl_hap6	3133809	3133810	rs2763981	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs2763981-T	NR	6E-27		0.0318493	[0.026-0.038] unit decrease	Affymetrix [319769] (imputed)	N
608	chr6_qbl_hap6	3133809	3133810	rs2763981	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs2763981-T	NR	3E-25		0.0308309	[0.025-0.037] unit decrease	Affymetrix [319769] (imputed)	N
608	chr6_qbl_hap6	3133809	3133810	rs2763981	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs2763981-T	NR	3E-8		0.0165328	[0.011-0.022] unit decrease	Affymetrix [321114] (imputed)	N
608	chr6_qbl_hap6	3133809	3133810	rs2763981	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	SLC44A4	rs2763981-T	NR	2E-27		0.0349933	[0.029-0.041] unit increase	Affymetrix [323123] (imputed)	N
608	chr6_qbl_hap6	3133809	3133810	rs2763981	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs2763981-T	NR	1E-24		0.0307655	[0.025-0.037] unit decrease	Affymetrix [321169] (imputed)	N
608	chr6_qbl_hap6	3133809	3133810	rs2763981	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	6p21.33	SLC44A4	rs2763981-A	NR	8E-14				Affymetrix, Illumina [NR] (imputed)	N
608	chr6_qbl_hap6	3133809	3133810	rs2763981	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	6p21.33	SLC44A4	rs2763981-A	NR	1E-18	(EA)			Affymetrix, Illumina [NR] (imputed)	N
608	chr6_qbl_hap6	3133809	3133810	rs2763981	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	6p21.33	SLC44A4	rs2763981-A	NR	3E-19	(EA)			Affymetrix, Illumina [NR] (imputed)	N
608	chr6_qbl_hap6	3133809	3133810	rs2763981	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	6p21.33	SLC44A4	rs2763981-A	NR	1E-14				Affymetrix, Illumina [NR] (imputed)	N
608	chr6_qbl_hap6	3133809	3133810	rs2763981	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	6p21.33	SLC44A4	rs2763981-A	NR	6E-14	(EA)	0.021	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
608	chr6_qbl_hap6	3133809	3133810	rs2763981	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	6p21.33	SLC44A4	rs2763981-A	NR	1E-10		0.015	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
608	chr6_qbl_hap6	3133809	3133810	rs2763981	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	6p21.33	SLC44A4	rs2763981-A	NR	4E-6		0.012	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
608	chr6_qbl_hap6	3133809	3133810	rs2763981	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	6p21.33	SLC44A4	rs2763981-A	NR	2E-8	(EA)	0.021	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
608	chr6_qbl_hap6	3133809	3133810	rs2763981	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	6p21.33	SLC44A4	rs2763981-A	NR	5E-11				Affymetrix, Illumina [NR] (imputed)	N
608	chr6_qbl_hap6	3133809	3133810	rs2763981	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	6p21.33	SLC44A4	rs2763981-A	NR	3E-11	(EA)			Affymetrix, Illumina [NR] (imputed)	N
608	chr6_qbl_hap6	3133809	3133810	rs2763981	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	6p21.33	SLC44A4	rs2763981-A	NR	7E-12				Affymetrix, Illumina [NR] (imputed)	N
608	chr6_qbl_hap6	3133809	3133810	rs2763981	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	6p21.33	SLC44A4	rs2763981-A	NR	4E-12	(EA)			Affymetrix, Illumina [NR] (imputed)	N
608	chr6_qbl_hap6	3133809	3133810	rs2763981	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	6p21.33	SLC44A4	rs2763981-A	NR	6E-9	(EA)	1.145	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
608	chr6_qbl_hap6	3133809	3133810	rs2763981	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	6p21.33	SLC44A4	rs2763981-A	NR	3E-9		1.01	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
608	chr6_qbl_hap6	3133809	3133810	rs2763981	30670697	Kilpelainen TO	2019-01-22	Nat Commun	Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity.	Triglycerides x physical activity interaction (2df test)	7,294 African American inactive individuals, 12,832 African American active individuals, 1,352 Asian ancestry inactive individuals, 3,049 Asian ancestry active individuals, 20,622 European ancestry inactive individuals, 51,480 European ancestry active individuals, 2,166 Hispanic or Latin American inactive individuals, 3,486 Hispanic or Latin American active individuals	580 African American inactive individuals, 1,540 African American active individuals, 1,217 South African Black ancestry inactive individuals, 389 South African Black ancestry active individuals, 765 East Asian ancestry inactive individuals, 1,814 East Asian ancestry active individuals,  724 South Asian ancestry inactive individuals, 1,424 South Asian ancestry active individuals, 32,456 European ancestry inactive individuals, 49,510 European ancestry active individuals, 2,619 Hispanic inactive individuals, 8,803 Hispanic active individuals	6p21.33	NR	rs2763981-A	0.7045	4E-14	(EA)			Affymetrix, Illumina [at least 2500000] (imputed)	N
608	chr6_qbl_hap6	3133809	3133810	rs2763981	28334935	Raffield LM	2017-05-15	Hum Mol Genet	Genome-wide association study of iron traits and relation to diabetes in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL): potential genomic intersection of iron and glucose regulation?	Iron status biomarkers (total iron binding capacity)	12,586 Hispanic/Latino individuals	NA	6p21.33	SLC44A4	rs2763981-T	NR	8E-7		0.124	[0.075-0.173] unit decrease	Illumina [27700000] (imputed)	N
608	chr6_qbl_hap6	3134203	3134204	rs9267653	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs9267653-T	NR	9E-9		0.0178718	[0.012-0.024] unit decrease	Affymetrix [319769] (imputed)	N
608	chr6_qbl_hap6	3134203	3134204	rs9267653	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs9267653-T	NR	1E-8		0.0176946	[0.012-0.024] unit decrease	Affymetrix [319769] (imputed)	N
608	chr6_qbl_hap6	3134203	3134204	rs9267653	26423011	Wain LV	2015-09-27	Lancet Respir Med	Novel insights into the genetics of smoking behaviour, lung function, and chronic obstructive pulmonary disease (UK BiLEVE): a genetic association study in UK Biobank.	Lung function (low FEV1 vs high FEV1)	19,493 European ancestry individuals with low FEV1 measurements, 9,808 European ancestry individuals with high FEV1 measurements	NA	6p21.33	SLC44A4	rs9267653-C	NR	4E-9		0.124	[0.083-0.165] unit increase	Affymetrix [28509962] (imputed)	N
608	chr6_qbl_hap6	3134243	3134244	rs553108	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls	NA	6p21.33	SLC44A4	rs553108-A	0.418103	2E-10		0.0516698	[0.036-0.068] unit decrease	Affymetrix [7288503] (imputed)	N
608	chr6_qbl_hap6	3134243	3134244	rs553108	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Ease of getting up in the morning	385,949 European ancestry individuals	NA	6p21.33	NR	rs553108-A	0.4159	3E-8		0.0097	[0.0062-0.0132] unit increase	Affymetrix, Illumina [10862568] (imputed)	N
608	chr6_qbl_hap6	3134265	3134266	rs501942	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	6p21.33	NR	rs501942-T	0.09	3E-19		1.26	[1.2-1.32]	Illumina [8468885] (imputed)	N
608	chr6_qbl_hap6	3134265	3134266	rs501942	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in ever smokers	23,223 European ancestry cases,  16,964 European ancestry controls	NA	6p21.33	SLC44A4	rs501942-T	0.101035865	3E-14		1.2034894	[1.147434239-1.262282973]	Illumina [10439017] (imputed)	N
608	chr6_qbl_hap6	3134265	3134266	rs501942	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	6p21.33	SLC44A4	rs501942-T	0.098642093	8E-19		1.1851386	[1.141406179-1.230546538]	Illumina [10439017] (imputed)	N
608	chr6_qbl_hap6	3134799	3134800	rs9267654	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs9267654-A	NR	2E-12		0.0251845	[0.018-0.032] unit decrease	Affymetrix [319769] (imputed)	N
608	chr6_qbl_hap6	3134799	3134800	rs9267654	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs9267654-A	NR	3E-12		0.0249577	[0.018-0.032] unit decrease	Affymetrix [319769] (imputed)	N
608	chr6_qbl_hap6	3134799	3134800	rs9267654	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs9267654-A	NR	4E-10		0.0223343	[0.015-0.029] unit increase	Affymetrix [321016] (imputed)	N
608	chr6_qbl_hap6	3135681	3135682	rs573098	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs573098-A	NR	2E-20		0.0279205	[0.022-0.034] unit increase	Affymetrix [321016] (imputed)	N
608	chr6_qbl_hap6	3135681	3135682	rs573098	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p21.33	SLC44A4	rs573098-A	NR	1E-9		0.0200634	[0.014-0.027] unit decrease	Affymetrix [323858] (imputed)	N
608	chr6_qbl_hap6	3135681	3135682	rs573098	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	6p21.33	NR	rs573098-T	0.679422	2E-12		0.0509102	[0.037-0.065] unit decrease	Affymetrix [17914406] (imputed)	N
608	chr6_qbl_hap6	3136389	3136390	rs12661281	25629512	Cheng CY	2015-01-28	Nat Commun	New loci and coding variants confer risk for age-related macular degeneration in East Asians.	Exudative age-related macular degeneration	2,119 East Asian ancestry cases, 5,691 East Asian ancestry controls	4,226 East Asian ancestry cases, 10,289 East Asian ancestry controls	6p21.33	SLC44A4	rs12661281-?	NR	1E-11		1.27	[NR]	Illumina [4471719] (imputed)	N
608	chr6_qbl_hap6	3137715	3137716	rs2736428	20421499	Levy D	2010-04-26	Proc Natl Acad Sci U S A	Genome-wide association identifies OBFC1 as a locus involved in human leukocyte telomere biology.	Telomere length	3,417 European ancestry individuals	1,893 African American and European ancestry individuals, 2,876 European ancestry individuals	6p21.33	SLC44A4	rs2736428-T	NR	3E-6		0.05	[0.03-0.07] kb increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
608	chr6_qbl_hap6	3139776	3139777	rs9267658	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6p21.33		rs9267658-T	0.1428	5E-12		0.0138	[0.0099-0.0177] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
608	chr6_qbl_hap6	3139864	3139865	rs114400264	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		SLC44A4	rs114400264-?	NR	5E-9	(male)	2.81252	[NR] unit decrease	Affymetrix [NR] (imputed)	N
608	chr6_qbl_hap6	3140025	3140026	rs9267659	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	6p21.33	SLC44A4	rs9267659-A	0.2004	4E-11		0.079	[0.056-0.102] unit increase	NR [7784415] (imputed)	N
608	chr6_qbl_hap6	3140691	3140692	rs114951054	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		EHMT2-AS1	rs114951054-?	NR	2E-9	(male)	2.96479	[NR] unit decrease	Affymetrix [NR] (imputed)	N
608	chr6_qbl_hap6	3140803	3140804	rs605203	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	6p21.33	NR	rs605203-A	0.62	4E-43		0.025	[0.021-0.029] unit increase	Affymetrix [2446094] (imputed)	N
608	chr6_qbl_hap6	3140803	3140804	rs605203	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	6p21.33	NR	rs605203-A	0.62	5E-8				Affymetrix [2446094] (imputed)	N
608	chr6_qbl_hap6	3141209	3141210	rs116369005	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	6p21.33	SLC44A4, EHMT2-AS1	rs116369005-C	0.021645	3E-10		0.052029066	[0.036-0.068] unit increase	Affymetrix [93095623] (imputed)	N
608	chr6_qbl_hap6	3141427	3141428	rs41267086	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C4A;C4B	5,353 Icelandic ancestry individuals	NA	6p21.33		rs41267086-A	0.09194	2E-44		0.435404	[0.37-0.5] unit decrease	Illumina [7506463] (imputed)	N
608	chr6_qbl_hap6	3141427	3141428	rs41267086	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.33	NR	rs41267086-?	NR	6E-12				Affymetrix [~ 8270000] (imputed)	N
608	chr6_qbl_hap6	3142011	3142012	rs589428	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI in non-smokers	75,379 European ancestry women, 45,811 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	6p21.33	EHMT2	rs589428-G	0.651	2E-10	(EA)	0.016	[0.01-0.022] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
608	chr6_qbl_hap6	3142011	3142012	rs589428	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	6p21.33	EHMT2	rs589428-G	0.65	1E-17	(EA)	0.024	[0.018-0.03] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
608	chr6_qbl_hap6	3142231	3142232	rs41267090	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p21.33	EHMT2	rs41267090-T	0.05	8E-7	(EA)	2.82	[1.84-4.33]	Illumina [up to 547389]	N
608	chr6_qbl_hap6	3144098	3144099	rs74434374	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NCR3	5,364 Icelandic ancestry individuals	NA	6p21.33		rs74434374-A	0.07046	4E-24		0.354873	[0.29-0.42] unit decrease	Illumina [7506463] (imputed)	N
608	chr6_qbl_hap6	3145024	3145025	rs652888	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	EHMT2	rs652888-G	NR	3E-10		0.0207108	[0.014-0.027] unit decrease	Affymetrix [319769] (imputed)	N
608	chr6_qbl_hap6	3145024	3145025	rs652888	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	EHMT2	rs652888-G	NR	1E-9		0.0200442	[0.014-0.027] unit decrease	Affymetrix [319769] (imputed)	N
608	chr6_qbl_hap6	3145024	3145025	rs652888	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	EHMT2	rs652888-G	NR	1E-9		0.02033	[0.014-0.027] unit decrease	Affymetrix [321169] (imputed)	N
608	chr6_qbl_hap6	3145024	3145025	rs652888	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p21.33	EHMT2	rs652888-G	NR	2E-8		0.0206131	[0.013-0.028] unit decrease	Affymetrix [323858] (imputed)	N
608	chr6_qbl_hap6	3145024	3145025	rs652888	27157822	Hallberg P	2016-05-03	Lancet Diabetes Endocrinol	Genetic variants associated with antithyroid drug-induced agranulocytosis: a genome-wide association study in a European population.	Anti-thyroid drug induced agranulocytosis	38 European ancestry cases, 1 case, 5,170 European ancestry controls	NA	6p21.33	EHMT2	rs652888-?	NR	2E-11		4.73	[3.00-7.44]	Illumina [9380034] (imputed)	N
608	chr6_qbl_hap6	3145024	3145025	rs652888	25802187	Jiang DK	2015-04-28	Hepatology	Genetic variants in five novel loci including CFB and CD40 predispose to chronic hepatitis B.	Chronic hepatitis B infection	2,514 Chinese ancestry cases, 1,130 Chinese ancestry controls	6,600 Chinese ancestry cases, 8,127 Chinese ancestry controls	6p21.33	EHMT2	rs652888-G	0.24	1E-6		1.14	[1.08-1.19]	Illumina [3680900] (imputed)	N
608	chr6_qbl_hap6	3145024	3145025	rs652888	23760081	Kim YJ	2013-06-10	Hum Mol Genet	A genome-wide association study identified new variants associated with the risk of chronic hepatitis B.	Chronic hepatitis B infection	400 Korean ancestry cases, 1,000 Korean ancestry controls	971 Korean ancestry cases, 1,938 Korean ancestry controls	6p21.33	EHMT2	rs652888-?	NR	7E-13		1.38	[1.22-1.57]	Illumina [719265]	N
608	chr6_qbl_hap6	3145024	3145025	rs652888	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.33	EHMT2	rs652888-C	0.2021	3E-46		2.71	[NR]	Illumina [242824]	N
608	chr6_qbl_hap6	3145259	3145260	rs2844458	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	EHMT2	rs2844458-A	NR	5E-9		0.0178304	[0.012-0.024] unit increase	Affymetrix [319769] (imputed)	N
608	chr6_qbl_hap6	3145259	3145260	rs2844458	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	EHMT2	rs2844458-A	NR	3E-8		0.0170038	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
609	chr6_qbl_hap6	3149860	3149861	rs486416	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	6p21.33		rs486416-A	0.6376	6E-9		0.013	[0.0091-0.0169] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
609	chr6_qbl_hap6	3149860	3149861	rs486416	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	6p21.33	EHMT2	rs486416-G	0.34730000000000005	1E-9		1.0203034		Affymetrix [11880941] (imputed)	N
609	chr6_qbl_hap6	3152320	3152321	rs34929649	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	EHMT2	rs34929649-C	NR	3E-13		0.0219327	[0.016-0.028] unit increase	Affymetrix [321169] (imputed)	N
609	chr6_qbl_hap6	3154622	3154623	rs115699278	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p21.33	EHMT2	rs115699278-T	0.011501	2E-9		0.06559309	[0.044-0.087] unit decrease	Affymetrix [93095623] (imputed)	N
609	chr6_qbl_hap6	3156666	3156667	rs115062572	33841421	Li J	2021-03-25	Front Immunol	Variants at the MHC Region Associate With Susceptibility to <i>Clostridioides difficile</i> Infection: A Genome-Wide Association Study Using Comprehensive Electronic Health Records.	Clostridioides difficle infection in antibiotics-users	587 European ancestry cases, 3,166 European ancestry controls	NA	6p21.33	ZBTB12	rs115062572-T	0.022	1E-6		2.29	[1.7-2.98]	Illumina [64973696] (imputed)	N
609	chr6_qbl_hap6	3156666	3156667	rs115062572	33841421	Li J	2021-03-25	Front Immunol	Variants at the MHC Region Associate With Susceptibility to <i>Clostridioides difficile</i> Infection: A Genome-Wide Association Study Using Comprehensive Electronic Health Records.	Clostridioides difficle infection	1,160 European ancestry cases, 14,144 European ancestry controls	NA	6p21.33	ZBTB12, EHMT2, C2, CYP21A2	rs115062572-T	0.0203	4E-6		1.74	[1.41-2.08]	Illumina [64973696] (imputed)	N
609	chr6_qbl_hap6	3156666	3156667	rs115062572	32641083	Hillary RF	2020-07-08	Genome Med	Multi-method genome- and epigenome-wide studies of inflammatory protein levels in healthy older adults.	Tumor necrosis factor beta levels	982 Scottish ancestry individuals	NA	6p21.33	NR	rs115062572-T	0.01979	5E-10		1.23251	[0.84-1.62] unit decrease	Illumina [7903493] (imputed)	N
609	chr6_qbl_hap6	3156666	3156667	rs115062572	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.33		rs115062572-T	0.02316600000000002	2E-8		1.0846895	[1.05-1.11]	Affymetrix, Illumina [9851866] (imputed)	N
609	chr6_qbl_hap6	3156958	3156959	rs17207748	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		EHMT2	rs17207748-?	NR	6E-9	(male)	2.35655	[NR] unit decrease	Affymetrix [NR] (imputed)	N
609	chr6_qbl_hap6	3157223	3157224	rs2243873	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	6p21.33	SLC44A4, EHMT2, STK19, CYP21A2, TNXB	rs2243873-?	NR	4E-11				Affymetrix, Illumina [18800000] (imputed)	N
609	chr6_qbl_hap6	3157223	3157224	rs2243873	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	6p21.33	SLC44A4, EHMT2, STK19, CYP21A2, TNXB	rs2243873-?	NR	3E-14	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
609	chr6_qbl_hap6	3157223	3157224	rs2243873	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	6p21.33	SLC44A4, EHMT2, STK19, CYP21A2, TNXB	rs2243873-?	NR	6E-10				Affymetrix, Illumina [18800000] (imputed)	N
609	chr6_qbl_hap6	3157223	3157224	rs2243873	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	6p21.33	SLC44A4, EHMT2, STK19, CYP21A2, TNXB	rs2243873-?		7E-13	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
609	chr6_qbl_hap6	3157223	3157224	rs2243873	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	6p21.33	SLC44A4, EHMT2, STK19, CYP21A2, TNXB	rs2243873-?	NR	4E-10				Affymetrix, Illumina [18800000] (imputed)	N
609	chr6_qbl_hap6	3157223	3157224	rs2243873	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	6p21.33	SLC44A4, EHMT2, STK19, CYP21A2, TNXB	rs2243873-?	NR	1E-10	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
609	chr6_qbl_hap6	3157223	3157224	rs2243873	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	6p21.33	SLC44A4, EHMT2, STK19, CYP21A2, TNXB	rs2243873-?	NR	6E-9				Affymetrix, Illumina [18800000] (imputed)	N
609	chr6_qbl_hap6	3157223	3157224	rs2243873	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	6p21.33	SLC44A4, EHMT2, STK19, CYP21A2, TNXB	rs2243873-?	NR	3E-9	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
609	chr6_qbl_hap6	3158328	3158329	rs115884658	32534018	Liu X	2020-06-10	Brain Behav Immun	Genetic factors underlying the bidirectional relationship between autoimmune and mental disorders - findings from a Danish population-based study.	Autoimmune traits	1,383 Danish ancestry cases, 62,656 Danish ancestry controls	NA	6p21.33	NR	rs115884658-A	0.047	2E-15		1.83	[1.6-2.1]	NR [7721839] (imputed)	N
609	chr6_qbl_hap6	3158328	3158329	rs115884658	29358691	Bonas-Guarch S	2018-01-22	Nat Commun	Re-analysis of public genetic data reveals a rare X-chromosomal variant associated with type 2 diabetes.	Type 2 diabetes	7,522 European ancestry cases, 50,446 European ancestry controls	35,789 African-American, East Asian, South Asian, European or Hispanic cases, 56,738 African-American, East Asian, South Asian, European or Hispanic controls	6p21.33	EHMT2	rs115884658-A	NR	3E-10		1.21	[1.14-1.29]	Affymetrix, Illumina [1918233] (imputed)	N
609	chr6_qbl_hap6	3158337	3158338	rs7887	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein EEF2K	5,361 Icelandic ancestry individuals	NA	6p21.33		rs7887-T	0.3571	6E-30		0.225707	[0.19-0.26] unit decrease	Illumina [7506463] (imputed)	N
609	chr6_qbl_hap6	3158337	3158338	rs7887	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C4A;C4B	5,362 Icelandic ancestry individuals	NA	6p21.33		rs7887-T	0.3571	8E-212		0.572662	[0.54-0.61] unit decrease	Illumina [7506463] (imputed)	N
609	chr6_qbl_hap6	3158464	3158465	rs2844456	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p21.33	NR	rs2844456-C	0.06	7E-13		0.82	[0.78-0.87]	Affymetrix [9886854] (imputed)	N
609	chr6_qbl_hap6	3158464	3158465	rs2844456	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p21.33	NR	rs2844456-C	0.06	9E-13			[NR]	Affymetrix [9886854] (imputed)	N
609	chr6_qbl_hap6	3158464	3158465	rs2844456	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in non-current smokers	16,488 European ancestry cases, 169,688 European ancestry controls	NA	6p21.33	NR	rs2844456-C	0.06	9E-13		0.82	[0.78-0.87]	Affymetrix [9886854] (imputed)	N
609	chr6_qbl_hap6	3158464	3158465	rs2844456	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	6p21.33	NR	rs2844456-?		4E-16	(AGER)	0.6356	[NR] unit decrease	Illumina [NR]	N
609	chr6_qbl_hap6	3159923	3159924	rs118097312	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Red blood cell count	108,794 Japanese ancestry individuals	NA	6p21.33	NR	rs118097312-?	NR	1E-10		0.05623	[0.039-0.073] unit decrease novel	Illumina [6108953] (imputed)	N
609	chr6_qbl_hap6	3160637	3160637	rs750497811	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.33	C2	rs750497811-GA	NR	7E-11		0.0409958	[0.029-0.053] unit increase	Affymetrix [321114] (imputed)	N
609	chr6_qbl_hap6	3161044	3161045	rs9267663	22566634	Benjamin DJ	2012-05-07	Proc Natl Acad Sci U S A	The genetic architecture of economic and political preferences.	Economic and political preferences (environmentalism)	9,617 European ancestry individuals	NA	6p21.33	EHMT2	rs9267663-T	NR	6E-6		0.29	[0.16-0.42] unit decrease	Illumina [628922]	N
609	chr6_qbl_hap6	3162556	3162557	rs114508013	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs114508013-G	0.9640625	5E-41	(CFB, 4129_72_1)	0.89926857	[0.77-1.03] unit increase	Illumina [> 1000000] (imputed)	N
609	chr6_qbl_hap6	3162556	3162557	rs114508013	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs114508013-G	0.9640625	4E-14	(FTMT, 8048_9_3)	0.51218635	[0.38-0.64] unit decrease	Illumina [> 1000000] (imputed)	N
609	chr6_qbl_hap6	3162556	3162557	rs114508013	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs114508013-G	0.9640625	3E-16	(DEFB119, 13455_10_3)	0.5455914	[0.42-0.68] unit decrease	Illumina [> 1000000] (imputed)	N
609	chr6_qbl_hap6	3162556	3162557	rs114508013	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs114508013-G	0.9640625	3E-11	(MICA, 2730_58_2)	0.45406085	[0.32-0.59] unit increase	Illumina [> 1000000] (imputed)	N
609	chr6_qbl_hap6	3162556	3162557	rs114508013	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs114508013-G	0.9640625	2E-129	(TNXB, 5698_60_3)	1.5771569	[1.46-1.7] unit increase	Illumina [> 1000000] (imputed)	N
609	chr6_qbl_hap6	3162556	3162557	rs114508013	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs114508013-G	0.9640625	1E-66	(C2, 3186_2_2)	1.1762669	[1.05-1.31] unit increase	Illumina [> 1000000] (imputed)	N
609	chr6_qbl_hap6	3162556	3162557	rs114508013	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs114508013-G	0.9640625	1E-60	(ISG15, 14148_2_3)	1.1050375	[0.98-1.23] unit increase	Illumina [> 1000000] (imputed)	N
609	chr6_qbl_hap6	3162913	3162914	rs45462992	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6p21.33		rs45462992-?	NR	4E-6		0.86602	[0.8-0.93]	NR [685523]	N
609	chr6_qbl_hap6	3163464	3163465	rs2844455	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	C2, ZBTB12	rs2844455-T	NR	2E-11		0.0245279	[0.017-0.032] unit increase	Affymetrix [319769] (imputed)	N
609	chr6_qbl_hap6	3163464	3163465	rs2844455	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	C2, ZBTB12	rs2844455-T	NR	5E-11		0.0238761	[0.017-0.031] unit increase	Affymetrix [319769] (imputed)	N
609	chr6_qbl_hap6	3163464	3163465	rs2844455	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	C2, ZBTB12	rs2844455-T	NR	2E-11		0.0246589	[0.017-0.032] unit increase	Affymetrix [321169] (imputed)	N
609	chr6_qbl_hap6	3164119	3164120	rs558702	24871463	Armstrong DL	2014-05-29	Genes Immun	GWAS identifies novel SLE susceptibility genes and explains the association of the HLA region.	Systemic lupus erythematosus	725 European ancestry cases, 2,438 European ancestry controls	NA	6p21.33	C2	rs558702-A	0.1	8E-21		2.276	[2.097-2.47]	Illumina [NR]	N
609	chr6_qbl_hap6	3164649	3164650	rs9267665	21764829	Png E	2011-07-15	Hum Mol Genet	A genome-wide association study of hepatitis B vaccine response in an Indonesian population reveals multiple independent risk variants in the HLA region.	Hepatitis B vaccine response	1,683 Indonesian ancestry individuals	1,931 Indonesian ancestry individuals	6p21.33	HLA	rs9267665-?	NR	1E-17		2.05	[1.64-2.57]	Illumina [455508]	N
609	chr6_qbl_hap6	3169500	3169501	rs586346	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Coffee consumption	335,909 European ancestry individuals	39,924 European ancestry individuals	6p21.33	C2	rs586346-T	0.3648	7E-10		0.0095	[0.0066-0.0124] unit increase	Affymetrix [~ 7740000] (imputed)	N
609	chr6_qbl_hap6	3169830	3169831	rs1313996	32339537	Roberts V	2020-04-24	J Invest Dermatol	Genome wide association study identifies genetic associations with perceived age.	Youthful appearance (self-reported)	423,992 European ancestry individuals	NA	6p21.33	C2	rs1313996-T	0.363603	4E-11		0.970678	NR	Affymetrix [~ 9600000] (imputed)	N
609	chr6_qbl_hap6	3169830	3169831	rs1313996	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p21.33	NR	rs1313996-?	NR	7E-17		0.1086	[0.083-0.134] unit increase	Illumina [at least 560000] (imputed)	N
609	chr6_qbl_hap6	3171246	3171247	rs116508221	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		C2	rs116508221-?	NR	8E-10	(male)	3.05228	[NR] unit decrease	Affymetrix [NR] (imputed)	N
609	chr6_qbl_hap6	3172221	3172222	rs519417	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p21.33	NR	rs519417-?	NR	1E-6		4.887	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
609	chr6_qbl_hap6	3172221	3172222	rs519417	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	6p21.33	ZBTB12, CFB	rs519417-G	NR	7E-11		0.207694	[0.15-0.27] unit increase	Illumina [at least 950000] (imputed)	N
609	chr6_qbl_hap6	3172221	3172222	rs519417	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p21.33	NR	rs519417-?	NR	3E-9		0.0882	[0.059-0.117] unit increase	Illumina [at least 560000] (imputed)	N
609	chr6_qbl_hap6	3172283	3172284	rs622871	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	6p21.33	NR	rs622871-?	NR	7E-18	(male)	0.32361	[0.25-0.4] unit decrease	Affymetrix [7794483] (imputed)	N
609	chr6_qbl_hap6	3172283	3172284	rs622871	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	6p21.33	NR	rs622871-?	NR	6E-19	(female)	0.23136	[0.18-0.28] unit decrease	Affymetrix [7794483] (imputed)	N
609	chr6_qbl_hap6	3172283	3172284	rs622871	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	6p21.33	NR	rs622871-?	NR	5E-32		0.28011	[0.23-0.33] unit decrease	Affymetrix [7794483] (imputed)	N
609	chr6_qbl_hap6	3172283	3172284	rs622871	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA	6p21.33	NR	rs622871-?	NR	2E-6		0.0384	[0.023-0.054] unit increase	Illumina [at least 560000] (imputed)	N
609	chr6_qbl_hap6	3172283	3172284	rs622871	28762467	Wadelius M	2017-08-01	Clin Pharmacol Ther	Sulfasalazine-Induced Agranulocytosis Is Associated With the Human Leukocyte Antigen Locus.	Sulfasalazine-induced agranulocytosis	36 European ancestry cases, 5,170 European ancestry untreated controls	NA	6p21.33	C2	rs622871-?	NR	7E-7		3.29	[2.06-5.27]	Illumina [9380034] (imputed)	N
609	chr6_qbl_hap6	3172283	3172284	rs622871	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.33	C2	rs622871-G	NR	4E-9	(women)	0.0303318	[0.02-0.04] unit decrease	Illumina [13520550] (imputed)	N
609	chr6_qbl_hap6	3172283	3172284	rs622871	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.33	C2	rs622871-G	NR	1E-10		0.0232703	[0.016-0.03] unit decrease	Illumina [13520550] (imputed)	N
609	chr6_qbl_hap6	3172946	3172947	rs3128761	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)(bidirectional)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.33		rs3128761-A	NR	4E-7				Affymetrix [7846216] (imputed)	N
609	chr6_qbl_hap6	3174599	3174600	rs561312719	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs561312719-C	0.067	6E-73	(Ubiquitin carboxyl-terminal hydrolase 25, USP25.9215.117.3)	0.94	[0.84-1.04] unit increase	Affymetrix [10572788] (imputed)	N
609	chr6_qbl_hap6	3175100	3175101	rs532086	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	C2	rs532086-C	NR	2E-14		0.0323897	[0.024-0.041] unit decrease	Affymetrix [323858] (imputed)	N
609	chr6_qbl_hap6	3175100	3175101	rs532086	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	C2	rs532086-C	NR	1E-12		0.0302037	[0.022-0.039] unit decrease	Affymetrix [127266] (imputed)	N
609	chr6_qbl_hap6	3175100	3175101	rs532086	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	C2	rs532086-C	NR	9E-10		0.0255355	[0.017-0.034] unit increase	Affymetrix [323123] (imputed)	N
609	chr6_qbl_hap6	3175100	3175101	rs532086	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	6p21.33	C2	rs532086-T	0.859	3E-6		0.0016	[0.00062-0.00258] unit increase	Affymetrix [NR] (imputed)	N
609	chr6_qbl_hap6	3175522	3175523	rs685031	30104761	Zhou W	2018-08-13	Nat Genet	Efficiently controlling for case-control imbalance and sample relatedness in large-scale genetic association studies.	Coronary artery disease	31,355 European ancestry cases, 377,103 European ancestry controls	NA	6p21.33	C2	rs685031-A	0.389	9E-9				Affymetrix [28000000] (imputed)	N
609	chr6_qbl_hap6	3175522	3175523	rs685031	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	6p21.33	C2	rs685031-A	0.646	5E-10		0.043	[0.029-0.057] unit increase	Affymetrix [7947838] (imputed)	N
609	chr6_qbl_hap6	3175815	3175816	rs2844452	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	C2	rs2844452-G	NR	6E-12		0.0195783	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
609	chr6_qbl_hap6	3175815	3175816	rs2844452	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	C2	rs2844452-G	NR	6E-11		0.0206929	[0.015-0.027] unit increase	Affymetrix [323858] (imputed)	N
609	chr6_qbl_hap6	3175815	3175816	rs2844452	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	C2	rs2844452-G	NR	4E-11		0.0187691	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
609	chr6_qbl_hap6	3175815	3175816	rs2844452	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	C2	rs2844452-G	NR	2E-9		0.0190129	[0.013-0.025] unit increase	Affymetrix [127266] (imputed)	N
609	chr6_qbl_hap6	3175932	3175932	rs111329206	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	C2	rs111329206-TGGGCGGATCATGA	NR	1E-15		0.0257236	[0.019-0.032] unit decrease	Affymetrix [323123] (imputed)	N
609	chr6_qbl_hap6	3177470	3177471	rs9267673	29185836	Chen MH	2017-11-29	Platelets	Exome-chip meta-analysis identifies association between variation in ANKRD26 and platelet aggregation.	Platelet aggregation	3,664 European ancestry individuals, 549 Old Order Amish (founder/genetic isolate) individuals	1,184 European ancestry individuals, 613 African American individuals	6p21.33	C2	rs9267673-T	0.114	7E-6	(collagen 1)	0.173	[0.097-0.249] unit decrease	Illumina [129094]	N
609	chr6_qbl_hap6	3177470	3177471	rs9267673	21105107	Clifford RJ	2010-12-01	Hepatology	Genetic variations at loci involved in the immune response are risk factors for hepatocellular carcinoma.	Hepatocellular carcinoma	180 Korean ancestry cases, 271 Korean ancestry controls	206 Korean ancestry cases, 416 East Asian ancestry controls,	6p21.33	C2	rs9267673-?	0.08	2E-6		1.97	[1.47-2.64]	Affymetrix [658897]	N
609	chr6_qbl_hap6	3177748	3177749	rs644045	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	6p21.33	C2	rs644045-A	0.3528	3E-13		0.0413	[0.03-0.052] unit decrease	Affymetrix [at least 7947838] (imputed)	N
609	chr6_qbl_hap6	3177748	3177749	rs644045	28881265	Sobalska-Kwapis M	2017-09-01	Eur J Obstet Gynecol Reprod Biol	New variants near RHOJ and C2, HLA-DRA region and susceptibility to endometriosis in the Polish population-The genome-wide association study.	Endometriosis	171 European ancestry cases, 2,934 European ancestry controls	NA	6p21.33	C2, LOC101929163, HLA-DRA	rs644045-T	0.2853	2E-8		1.955	[1.541-2.48]	Illumina [274400]	N
609	chr6_qbl_hap6	3178614	3178615	rs3130682	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	6p21.33	C2	rs3130682-T	NR	1E-16		0.0630215	[0.048-0.078] unit decrease	Illumina [13520550] (imputed)	N
609	chr6_qbl_hap6	3179721	3179722	rs3128759	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	153,512 East Asian ancestry individuals	NA	6p21.33		rs3128759-T	0.915106	7E-17		0.0465594	[0.036-0.058] unit increase	Illumina [13479135] (imputed)	N
609	chr6_qbl_hap6	3181051	3181052	rs115009784	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL15	5,365 Icelandic ancestry individuals	NA	6p21.33		rs115009784-A	0.04844	1E-13		0.324224	[0.24-0.41] unit decrease	Illumina [7506463] (imputed)	N
609	chr6_qbl_hap6	3182159	3182160	rs3130683	28714975	Nelson CP	2017-07-17	Nat Genet	Association analyses based on false discovery rate implicate new loci for coronary artery disease.	Coronary artery disease (myocardial infarction, percutaneous transluminal coronary angioplasty, coronary artery bypass grafting, angina or chromic ischemic heart disease)	18,467 European and unknown ancestry cases, 45,264 European and unknown ancestry controls	57,347 European and unknown ancestry cases, 219,521 European and unknown ancestry controls	6p21.33	C2	rs3130683-T	0.86	3E-8		1.08	[1.05-1.11]	Affymetrix [9149595] (imputed)	N
609	chr6_qbl_hap6	3186276	3186277	rs497309	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in diabetes	70,762 European ancestry individuals, 20,967 African American individuals	NA	6p21.33	C2	rs497309-A	0.902	5E-12		1.009	[0.72-1.3] unit increase	Affymetrix [NR] (imputed)	N
609	chr6_qbl_hap6	3186433	3186434	rs9267677	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	6p21.33	Intergenic	rs9267677-T	0.8962	7E-16	(MTAG)	0.0218	[0.017-0.027] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
609	chr6_qbl_hap6	3186433	3186434	rs9267677	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6p21.33		rs9267677-T	0.9029	4E-14		0.018	[0.013-0.023] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
609	chr6_qbl_hap6	3186433	3186434	rs9267677	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6p21.33	Intergenic	rs9267677-T	0.9029	8E-18	(MTAG)	0.0191	[0.015-0.023] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
609	chr6_qbl_hap6	3186433	3186434	rs9267677	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	6p21.33	Intergenic	rs9267677-T	0.9038	2E-9	(MTAG)	0.0233	[0.016-0.031] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
609	chr6_qbl_hap6	3187736	3187737	rs2734335	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	C2	rs2734335-A	NR	2E-8		0.0157901	[0.01-0.021] unit decrease	Affymetrix [321016] (imputed)	N
609	chr6_qbl_hap6	3188147	3188148	rs556679	33893285	Guindo-Martinez M	2021-04-23	Nat Commun	The impact of non-additive genetic associations on age-related complex diseases.	Age-related macular degeneration	3,685 European ancestry cases, 52,952 European ancestry controls	NA	6p21.33		rs556679-T	0.1113519	5E-21		0.66		Affymetrix [15377238] (imputed)	N
609	chr6_qbl_hap6	3189765	3189766	rs7746553	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	6p21.33	C2	rs7746553-C	0.848517	5E-8		0.0160902	[0.01-0.022] unit increase	NR [16516521] (imputed)	N
609	chr6_qbl_hap6	3191011	3191012	rs9283893	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	SKIV2L, C2, XXbac-BPG116M5.17, NELFE, MIR1236, DXO, STK19	rs9283893-A	0.0446339	1E-32	(Neutrophil collagenase)	1.199	[1.01-1.39] unit increase	Affymetrix [509946]	N
609	chr6_qbl_hap6	3194546	3194547	rs184265581	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	6p21.33	NR	rs184265581-C	0.012356999999999951	6E-27		0.132322	[0.11-0.16] unit increase	Affymetrix [16580851] (imputed)	N
609	chr6_qbl_hap6	3197596	3197597	rs9332739	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CFB	5,365 Icelandic ancestry individuals	NA	6p21.33		rs9332739-C	0.0495	8E-121		0.960939	[0.88-1.04] unit decrease	Illumina [7506463] (imputed)	N
609	chr6_qbl_hap6	3197596	3197597	rs9332739	22705344	Sobrin L	2012-06-15	Ophthalmology	Heritability and genome-wide association study to assess genetic differences between advanced age-related macular degeneration subtypes.	Age-related macular degeneration (geographic atrophy)	819 European ancestry geographic atrophy cases, 4,134 European ancestry controls	NA	6p21.33	C2	rs9332739-?	0.955	1E-6		2.63	[1.79-3.85]	Affymetrix, Illumina [6036699] (imputed)	N
609	chr6_qbl_hap6	3197596	3197597	rs9332739	22705344	Sobrin L	2012-06-15	Ophthalmology	Heritability and genome-wide association study to assess genetic differences between advanced age-related macular degeneration subtypes.	Age-related macular degeneration (choroidal neovascularisation)	1,775 European ancestry choroidal neovascularization cases, 4,134 European ancestry controls	4,515 European and unknown ancestry choroidal neovascularization cases, 15,240 European and unknown ancestry controls	6p21.33	C2	rs9332739-?	0.955	2E-8		2.08	[1.61-2.7]	Affymetrix, Illumina [6036699] (imputed)	N
609	chr6_qbl_hap6	3197596	3197597	rs9332739	21665990	Yu Y	2011-06-10	Hum Mol Genet	Common variants near FRK/COL10A1 and VEGFA are associated with advanced age-related macular degeneration.	Age-related macular degeneration	2,594 European ancestry cases, 4,134 European ancestry controls	5,640 European ancestry cases, 52,174 European ancestry controls	6p21.33	C2	rs9332739-?	0.96	2E-23		2.17	[NR]	Affymetrix [6036699] (imputed)	N
609	chr6_qbl_hap6	3198922	3198923	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ZNF276	5,363 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	6E-17		0.263299	[0.2-0.32] unit increase	Illumina [7506463] (imputed)	N
609	chr6_qbl_hap6	3198922	3198923	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ZAP70	5,357 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	2E-20		0.28156	[0.22-0.34] unit increase	Illumina [7506463] (imputed)	N
609	chr6_qbl_hap6	3198922	3198923	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein WIF1	5,349 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	4E-12		0.207313	[0.15-0.27] unit increase	Illumina [7506463] (imputed)	N
609	chr6_qbl_hap6	3198922	3198923	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein UTS2	5,348 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	2E-13		0.213721	[0.16-0.27] unit increase	Illumina [7506463] (imputed)	N
609	chr6_qbl_hap6	3198922	3198923	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TPM2	5,353 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	6E-19		0.271948	[0.21-0.33] unit increase	Illumina [7506463] (imputed)	N
609	chr6_qbl_hap6	3198922	3198923	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TMCC3	5,355 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	6E-19		0.272099	[0.21-0.33] unit increase	Illumina [7506463] (imputed)	N
609	chr6_qbl_hap6	3198922	3198923	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SYNCRIP	5,354 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	3E-16		0.244214	[0.19-0.3] unit increase	Illumina [7506463] (imputed)	N
609	chr6_qbl_hap6	3198922	3198923	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RPS10	5,348 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	8E-14		0.223731	[0.16-0.28] unit increase	Illumina [7506463] (imputed)	N
609	chr6_qbl_hap6	3198922	3198923	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RNF43	5,340 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	2E-12		0.20687	[0.15-0.26] unit increase	Illumina [7506463] (imputed)	N
609	chr6_qbl_hap6	3198922	3198923	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RGS8	5,356 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	5E-18		0.263545	[0.2-0.32] unit increase	Illumina [7506463] (imputed)	N
609	chr6_qbl_hap6	3198922	3198923	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RAD51	5,354 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	2E-17		0.254863	[0.2-0.31] unit increase	Illumina [7506463] (imputed)	N
609	chr6_qbl_hap6	3198922	3198923	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RAB5C	5,347 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	8E-15		0.22726	[0.17-0.28] unit increase	Illumina [7506463] (imputed)	N
609	chr6_qbl_hap6	3198922	3198923	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RAB17	5,352 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	2E-16		0.244122	[0.19-0.3] unit increase	Illumina [7506463] (imputed)	N
609	chr6_qbl_hap6	3198922	3198923	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PTPN1	5,343 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	2E-12		0.199884	[0.14-0.26] unit increase	Illumina [7506463] (imputed)	N
609	chr6_qbl_hap6	3198922	3198923	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein POLR1C	5,352 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	4E-15		0.236472	[0.18-0.3] unit increase	Illumina [7506463] (imputed)	N
609	chr6_qbl_hap6	3198922	3198923	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PIK3CG	5,349 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	3E-18		0.254662	[0.2-0.31] unit increase	Illumina [7506463] (imputed)	N
609	chr6_qbl_hap6	3198922	3198923	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PCDHB4	5,352 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	1E-14		0.230172	[0.17-0.29] unit increase	Illumina [7506463] (imputed)	N
609	chr6_qbl_hap6	3198922	3198923	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PCDHB14	5,352 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	9E-17		0.252266	[0.19-0.31] unit increase	Illumina [7506463] (imputed)	N
609	chr6_qbl_hap6	3198922	3198923	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NRXN3	5,346 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	3E-14		0.227034	[0.17-0.29] unit increase	Illumina [7506463] (imputed)	N
609	chr6_qbl_hap6	3198922	3198923	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NDUFB4	5,364 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	9E-14		0.235159	[0.17-0.3] unit increase	Illumina [7506463] (imputed)	N
609	chr6_qbl_hap6	3198922	3198923	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MST1R	5,341 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	7E-16		0.227077	[0.17-0.28] unit increase	Illumina [7506463] (imputed)	N
609	chr6_qbl_hap6	3198922	3198923	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MOCS3	5,351 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	8E-15		0.232526	[0.17-0.29] unit increase	Illumina [7506463] (imputed)	N
609	chr6_qbl_hap6	3198922	3198923	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein KLK6	5,348 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	1E-15		0.225461	[0.17-0.28] unit increase	Illumina [7506463] (imputed)	N
609	chr6_qbl_hap6	3198922	3198923	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein KLK12	5,359 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	1E-19		0.280976	[0.22-0.34] unit increase	Illumina [7506463] (imputed)	N
609	chr6_qbl_hap6	3198922	3198923	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL18R1	5,351 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	5E-12		0.21193	[0.15-0.27] unit increase	Illumina [7506463] (imputed)	N
609	chr6_qbl_hap6	3198922	3198923	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL10RA	5,353 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	1E-13		0.230011	[0.17-0.29] unit increase	Illumina [7506463] (imputed)	N
609	chr6_qbl_hap6	3198922	3198923	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IGFL3	5,350 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	5E-15		0.237003	[0.18-0.3] unit increase	Illumina [7506463] (imputed)	N
609	chr6_qbl_hap6	3198922	3198923	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GBP6	5,348 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	5E-12		0.206328	[0.15-0.26] unit increase	Illumina [7506463] (imputed)	N
609	chr6_qbl_hap6	3198922	3198923	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FRZB	5,350 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	5E-13		0.207917	[0.15-0.26] unit increase	Illumina [7506463] (imputed)	N
609	chr6_qbl_hap6	3198922	3198923	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FCER1A	5,348 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	1E-19		0.272221	[0.21-0.33] unit increase	Illumina [7506463] (imputed)	N
609	chr6_qbl_hap6	3198922	3198923	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DSG1	5,349 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	4E-16		0.242273	[0.18-0.3] unit increase	Illumina [7506463] (imputed)	N
609	chr6_qbl_hap6	3198922	3198923	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DCUN1D5	5,344 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	2E-13		0.212735	[0.16-0.27] unit increase	Illumina [7506463] (imputed)	N
609	chr6_qbl_hap6	3198922	3198923	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CRABP1	5,340 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	4E-13		0.209239	[0.15-0.27] unit increase	Illumina [7506463] (imputed)	N
609	chr6_qbl_hap6	3198922	3198923	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CLEC12B	5,357 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	4E-18		0.267882	[0.21-0.33] unit increase	Illumina [7506463] (imputed)	N
609	chr6_qbl_hap6	3198922	3198923	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CDK5;CDK5R1	5,339 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	2E-15		0.225529	[0.17-0.28] unit increase	Illumina [7506463] (imputed)	N
609	chr6_qbl_hap6	3198922	3198923	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CCL1	5,354 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	1E-15		0.242251	[0.18-0.3] unit increase	Illumina [7506463] (imputed)	N
609	chr6_qbl_hap6	3198922	3198923	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CA4	5,356 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	2E-13		0.225651	[0.17-0.29] unit increase	Illumina [7506463] (imputed)	N
609	chr6_qbl_hap6	3198922	3198923	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C2orf40	5,353 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	3E-12		0.217148	[0.16-0.28] unit increase	Illumina [7506463] (imputed)	N
609	chr6_qbl_hap6	3198922	3198923	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein BCL2L10	5,355 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	9E-14		0.231319	[0.17-0.29] unit increase	Illumina [7506463] (imputed)	N
609	chr6_qbl_hap6	3198922	3198923	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein BCL2L1	5,350 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	1E-17		0.257737	[0.2-0.32] unit increase	Illumina [7506463] (imputed)	N
609	chr6_qbl_hap6	3198922	3198923	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein AZGP1	5,362 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	1E-19		0.281057	[0.22-0.34] unit increase	Illumina [7506463] (imputed)	N
609	chr6_qbl_hap6	3198922	3198923	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ANXA10	5,345 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	6E-13		0.218401	[0.16-0.28] unit increase	Illumina [7506463] (imputed)	N
609	chr6_qbl_hap6	3198922	3198923	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein AKT3	5,346 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	2E-14		0.217044	[0.16-0.27] unit increase	Illumina [7506463] (imputed)	N
609	chr6_qbl_hap6	3198922	3198923	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein AHSA1	5,351 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	2E-15		0.242628	[0.18-0.3] unit increase	Illumina [7506463] (imputed)	N
609	chr6_qbl_hap6	3198922	3198923	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ADGRE5	5,359 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	3E-18		0.271861	[0.21-0.33] unit increase	Illumina [7506463] (imputed)	N
609	chr6_qbl_hap6	3198922	3198923	rs1042663	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs1042663-A	0.095	5E-18	(ER membrane protein complex subunit 4, EMC4.13516.46.3)	0.36	[0.28-0.44] unit decrease	Affymetrix [10572788] (imputed)	N
609	chr6_qbl_hap6	3199802	3199803	rs9380272	20385819	Chen W	2010-04-12	Proc Natl Acad Sci U S A	Genetic variants near TIMP3 and high-density lipoprotein-associated loci influence susceptibility to age-related macular degeneration.	Age-related macular degeneration	2,157 European ancestry cases, 1,150 European ancestry controls	7,892 European ancestry cases, 5,998 European ancestry controls, 678 Japanese ancestry cases, 336 Japanese ancestry controls	6p21.33	CFB, C2	rs9380272-A	0.012	2E-8		4.31	[2.76-6.87]	Illumina [~ 2500000] (imputed)	N
609	chr6_qbl_hap6	3200620	3200621	rs78593564	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PSMD11	5,350 Icelandic ancestry individuals	NA	6p21.33		rs78593564-A	0.05083	8E-12		0.281426	[0.2-0.36] unit decrease	Illumina [7506463] (imputed)	N
609	chr6_qbl_hap6	3200620	3200621	rs78593564	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL36A	5,364 Icelandic ancestry individuals	NA	6p21.33		rs78593564-A	0.05083	2E-64		0.72184	[0.64-0.81] unit decrease	Illumina [7506463] (imputed)	N
609	chr6_qbl_hap6	3200620	3200621	rs78593564	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL21	5,363 Icelandic ancestry individuals	NA	6p21.33		rs78593564-A	0.05083	3E-50		0.636403	[0.55-0.72] unit decrease	Illumina [7506463] (imputed)	N
609	chr6_qbl_hap6	3200620	3200621	rs78593564	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	6p21.33	HLA region	rs78593564-?	NR	3E-8	(EA)			Affymetrix, Illumina [10537485] (imputed)	N
609	chr6_qbl_hap6	3200620	3200621	rs78593564	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	6p21.33	HLA region	rs78593564-?	NR	1E-8				Affymetrix, Illumina [10537485] (imputed)	N
609	chr6_qbl_hap6	3201629	3201630	rs2293751	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	C2, CFB	rs2293751-A	NR	2E-15		0.0227001	[0.017-0.028] unit increase	Affymetrix [321169] (imputed)	N
609	chr6_qbl_hap6	3201629	3201630	rs2293751	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.33	C2, C2-AS1, CFB, DXO, EHMT2, MIR1236, NELFE, NEU1, SKIV2L, SLC44A4, STK19, ZBTB12	rs2293751-A		3E-8		1.06	[1.04-1.08]	Affymetrix, Illumina [NR]	N
609	chr6_qbl_hap6	3202553	3202554	rs497239	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ZAP70	5,359 Icelandic ancestry individuals	NA	6p21.33		rs497239-C	0.09998	3E-12		0.217124	[0.16-0.28] unit increase	Illumina [7506463] (imputed)	N
609	chr6_qbl_hap6	3202553	3202554	rs497239	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein KLRC3	5,354 Icelandic ancestry individuals	NA	6p21.33		rs497239-C	0.09998	1E-32		0.360834	[0.3-0.42] unit increase	Illumina [7506463] (imputed)	N
609	chr6_qbl_hap6	3202553	3202554	rs497239	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ENTPD3	5,332 Icelandic ancestry individuals	NA	6p21.33		rs497239-C	0.09998	3E-13		0.205425	[0.15-0.26] unit increase	Illumina [7506463] (imputed)	N
609	chr6_qbl_hap6	3204731	3204732	rs547154	32843070	Winkler TW	2020-08-26	BMC Med Genomics	Genome-wide association meta-analysis for early age-related macular degeneration highlights novel loci and insights for advanced disease.	Early age-related macular degeneration	14,034 European ancestry cases, 91,214 European ancestry controls	NA	6p21.33	C2	rs547154-G	0.91	1E-18		1.24	[1.19-1.29]	Affymetrix, Illumina [11702853] (imputed)	N
609	chr6_qbl_hap6	3207817	3207818	rs4151667	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	CFB	rs4151667-A	0.042	6E-53	(Complement factor B, CFB.4129.72.1)	0.91	[0.79-1.03] unit decrease	Affymetrix [10572788] (imputed)	N
609	chr6_qbl_hap6	3207972	3207973	rs12614	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CFB	5,365 Icelandic ancestry individuals	NA	6p21.33		rs12614-T	0.07594	2E-11		0.239951	[0.17-0.31] unit decrease	Illumina [7506463] (imputed)	N
609	chr6_qbl_hap6	3207972	3207973	rs12614	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	CFB	rs12614-T	0.087	7E-25	(Gremlin-1, GREM1.4449.67.3)	0.44	[0.36-0.52] unit increase	Affymetrix [10572788] (imputed)	N
609	chr6_qbl_hap6	3207972	3207973	rs12614	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	CFB	rs12614-T	0.087	1E-283	(Neutrophil collagenase, MMP8.2954.56.2)	1.33	[1.25-1.41] unit increase	Affymetrix [10572788] (imputed)	N
609	chr6_qbl_hap6	3207972	3207973	rs12614	25802187	Jiang DK	2015-04-28	Hepatology	Genetic variants in five novel loci including CFB and CD40 predispose to chronic hepatitis B.	Chronic hepatitis B infection	2,514 Chinese ancestry cases, 1,130 Chinese ancestry controls	6,600 Chinese ancestry cases, 8,127 Chinese ancestry controls	6p21.33	CFB	rs12614-T	0.92	1E-34		1.89	[1.69-2.08]	Illumina [3680900] (imputed)	N
609	chr6_qbl_hap6	3207973	3207974	rs641153	32492067	Ruffieux H	2020-06-03	PLoS Comput Biol	A fully joint Bayesian quantitative trait locus mapping of human protein abundance in plasma.	Protein quantitative trait loci	394 European ancestry individuals	548 European ancestry individuals	6p21.33	NR	rs641153-?	NR	4E-12	(Factor B)			Illumina [~ 4000000] (imputed)	N
609	chr6_qbl_hap6	3207973	3207974	rs641153	22705344	Sobrin L	2012-06-15	Ophthalmology	Heritability and genome-wide association study to assess genetic differences between advanced age-related macular degeneration subtypes.	Age-related macular degeneration (geographic atrophy)	819 European ancestry geographic atrophy cases, 4,134 European ancestry controls	NA	6p21.33	CFB	rs641153-?	0.899	2E-9		2.13	[1.69-2.7]	Affymetrix, Illumina [6036699] (imputed)	N
609	chr6_qbl_hap6	3207973	3207974	rs641153	22705344	Sobrin L	2012-06-15	Ophthalmology	Heritability and genome-wide association study to assess genetic differences between advanced age-related macular degeneration subtypes.	Age-related macular degeneration (choroidal neovascularisation)	1,775 European ancestry choroidal neovascularization cases, 4,134 European ancestry controls	4,515 European and unknown ancestry choroidal neovascularization cases, 15,240 European and unknown ancestry controls	6p21.33	CFB	rs641153-?	0.899	1E-17		2.22	[1.85-2.63]	Affymetrix, Illumina [6036699] (imputed)	N
609	chr6_qbl_hap6	3207973	3207974	rs641153	21665990	Yu Y	2011-06-10	Hum Mol Genet	Common variants near FRK/COL10A1 and VEGFA are associated with advanced age-related macular degeneration.	Age-related macular degeneration	2,594 European ancestry cases, 4,134 European ancestry controls	5,640 European ancestry cases, 52,174 European ancestry controls	6p21.33	CFB	rs641153-?	0.90	6E-31		1.85	[NR]	Affymetrix [6036699] (imputed)	N
609	chr6_qbl_hap6	3207973	3207974	rs641153	20385826	Neale BM	2010-04-12	Proc Natl Acad Sci U S A	Genome-wide association study of advanced age-related macular degeneration identifies a role of the hepatic lipase gene (LIPC).	Age-related macular degeneration	979 cases, 1,709 controls	868 European ancestry cases, 410 European ancestry controls, 4,921 cases, 3,824 controls	6p21.33	CFB, C2	rs641153-?	NR	2E-20				Affymetrix [632932]	N
609	chr6_qbl_hap6	3208728	3208729	rs1048709	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CFB	5,365 Icelandic ancestry individuals	NA	6p21.33		rs1048709-A	0.2856	2E-16		0.172241	[0.13-0.21] unit decrease	Illumina [7506463] (imputed)	N
609	chr6_qbl_hap6	3208728	3208729	rs1048709	31375628	Tengvall K	2019-08-02	Proc Natl Acad Sci U S A	Molecular mimicry between Anoctamin 2 and Epstein-Barr virus nuclear antigen 1 associates with multiple sclerosis risk.	Anti-anoctamin 2 antibody levels	11,936 European ancestry individuals	NA	6p21.33	NR	rs1048709-A	NR	3E-7		0.054	[0.029-0.079] unit increase	Illumina [615763]	N
609	chr6_qbl_hap6	3208937	3208938	rs4151669	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	DXO, C2, CFB, EHMT2, SLC44A4, EHMT2-AS1, ZBTB12, XXbac-BPG116M5.17, C2-AS1, NELFE, MIR1236, STK19, C4A	rs4151669-A	0.04112337	6E-28	(EA, Complement factor B)	1.17	[0.97-1.37] unit decrease	Affymetrix [509946]	N
609	chr6_qbl_hap6	3210193	3210194	rs537160	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p21.33	NR	rs537160-G	0.6394	3E-7		0.0063	[0.0039-0.0087] unit increase	NR [7666894] (imputed)	N
609	chr6_qbl_hap6	3210193	3210194	rs537160	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.33	XXbac-BPG116M5.17, CFB	rs537160-A	0.3352	9E-11		0.0478	[0.033-0.062] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
609	chr6_qbl_hap6	3210500	3210501	rs45600936	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	6p21.33	CFB	rs45600936-T	0.00839800000000002	4E-10		0.07604781	[0.052-0.1] unit decrease	Affymetrix [93095623] (imputed)	N
609	chr6_qbl_hap6	3210744	3210745	rs541862	29234017	Carayol J	2017-12-12	Nat Commun	Protein quantitative trait locus study in obesity during weight-loss identifies a leptin regulator.	Protein levels in obesity	494 European ancestry individuals	NA	6p21.33	NR	rs541862-?	NR	3E-11	(Factor B)	0.15	[0.1-0.2] unit increase	Illumina [4020654] (imputed)	N
609	chr6_qbl_hap6	3210744	3210745	rs541862	22694956	Cipriani V	2012-06-13	Hum Mol Genet	Genome-wide association study of age-related macular degeneration identifies associated variants in the TNXB-FKBPL-NOTCH4 region of chromosome 6p21.3.	Age-related macular degeneration	893 European ancestry cases, 2,199 European ancestry controls	1,411 European ancestry cases, 1,431 European ancestry controls	6p21.33	CFB	rs541862-T	0.99	9E-17		1.89	[1.61-2.17]	Illumina [2272849] (imputed)	N
609	chr6_qbl_hap6	3211333	3211334	rs4151657	24837172	Juyal G	2014-05-16	Gut	Genome-wide association scan in north Indians reveals three novel HLA-independent risk loci for ulcerative colitis.	Ulcerative colitis	603 North Indian ancestry cases, 622 North Indian ancestry controls	733 North Indian ancestry cases, 1,148 North Indian ancestry controls	6p21.33	CFB, BAT2, MSH5, HSPA1L, SLC44A4	rs4151657-G	0.29	5E-14		1.54	[1.38-1.73]	Illumina [480391]	N
609	chr6_qbl_hap6	3212257	3212258	rs4151659	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	CFB	rs4151659-G	0.013	2E-18	(ER membrane protein complex subunit 4, EMC4.13516.46.3)	0.94	[0.72-1.16] unit decrease	Affymetrix [10572788] (imputed)	N
609	chr6_qbl_hap6	3212653	3212654	rs1270942	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	2,018 European ancestry cases, 6,925 European ancestry controls	6p21.33	MHC class III	rs1270942-C		2E-165		2.28	[2.15-2.42]	Illumina [644674]	N
609	chr6_qbl_hap6	3212653	3212654	rs1270942	25936594	Tomer Y	2015-04-27	J Autoimmun	Genome wide identification of new genes and pathways in patients with both autoimmune thyroiditis and type 1 diabetes.	Type 1 diabetes and autoimmune thyroid diseases	346 European ancestry cases, 727 European ancestry controls	185 European ancestry cases, 340 European ancestry controls	6p21.33	BAT2, HSPA1L, CFB, TNXB, NOTCH4	rs1270942-C	NR	5E-25		3.0494		Illumina [514008]	N
609	chr6_qbl_hap6	3212696	3212697	rs4151671	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		AL645922.1	rs4151671-?	NR	2E-8	(male)	2.99493	[NR] unit decrease	Affymetrix [NR] (imputed)	N
609	chr6_qbl_hap6	3212696	3212697	rs4151671	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA		NR	rs4151671-C	0.94890625	7E-10	(IFNAR1, 6055_53_3)	0.3487593	[0.24-0.46] unit increase	Illumina [> 1000000] (imputed)	N
609	chr6_qbl_hap6	3212696	3212697	rs4151671	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA		NR	rs4151671-C	0.94890625	6E-23	(FTMT, 8048_9_3)	0.5590734	[0.45-0.67] unit decrease	Illumina [> 1000000] (imputed)	N
609	chr6_qbl_hap6	3212696	3212697	rs4151671	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA		NR	rs4151671-C	0.94890625	2E-49	(ISG15, 14148_2_3)	0.84025466	[0.73-0.95] unit increase	Illumina [> 1000000] (imputed)	N
609	chr6_qbl_hap6	3212696	3212697	rs4151671	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA		NR	rs4151671-C	0.94890625	2E-23	(DEFB119, 13455_10_3)	0.5583053	[0.45-0.67] unit decrease	Illumina [> 1000000] (imputed)	N
609	chr6_qbl_hap6	3212696	3212697	rs4151671	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA		NR	rs4151671-C	0.94890625	2E-14	(MICA, 2730_58_2)	0.4376745	[0.33-0.55] unit increase	Illumina [> 1000000] (imputed)	N
609	chr6_qbl_hap6	3212696	3212697	rs4151671	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA		NR	rs4151671-C	0.94890625	2E-126	(TNXB, 5698_60_3)	1.3120593	[1.21-1.41] unit increase	Illumina [> 1000000] (imputed)	N
609	chr6_qbl_hap6	3212696	3212697	rs4151671	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA		NR	rs4151671-C	0.94890625	1E-9	(IL15, 10795_32_3)	0.34537017	[0.23-0.46] unit increase	Illumina [> 1000000] (imputed)	N
609	chr6_qbl_hap6	3212696	3212697	rs4151671	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA		NR	rs4151671-C	0.94890625	1E-66	(CFB, 4129_72_1)	0.96344995	[0.86-1.07] unit increase	Illumina [> 1000000] (imputed)	N
609	chr6_qbl_hap6	3212696	3212697	rs4151671	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA		NR	rs4151671-C	0.94890625	1E-41	(C2, 3186_2_2)	0.78192717	[0.67-0.89] unit increase	Illumina [> 1000000] (imputed)	N
609	chr6_qbl_hap6	3213371	3213372	rs2072633	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	CFB	rs2072633-A	NR	2E-10		0.0180815	[0.013-0.024] unit decrease	Affymetrix [321169] (imputed)	N
609	chr6_qbl_hap6	3213371	3213372	rs2072633	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	6p21.33	C2, CFB, MIR1236, NELFE, SKIV2L	rs2072633-A	0.443	6E-13		0.0411	[0.03-0.052] unit decrease	NR [8041861] (imputed)	N
609	chr6_qbl_hap6	3213623	3213624	rs4151672	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		CFB	rs4151672-?	NR	2E-8	(male)	2.99497	[NR] unit decrease	Affymetrix [NR] (imputed)	N
609	chr6_qbl_hap6	3213710	3213711	rs522162	23577725	Naj AC	2013-05-01	Ann Hum Genet	Genetic factors in nonsmokers with age-related macular degeneration revealed through genome-wide gene-environment interaction analysis.	Age-related macular degeneration (extreme sampling)	720 European ancestry grade 5 cases, 513 European ancestry grade 1 controls	70 European ancestry grade 5 cases, 73 European ancestry grade 1 controls	6p21.33	RDBP, CFB, DKFZp779M0311	rs522162-?	0.93	3E-7		2.38	[1.69-3.33]	Affymetrix [2543887] (imputed)	N
609	chr6_qbl_hap6	3213710	3213711	rs522162	23577725	Naj AC	2013-05-01	Ann Hum Genet	Genetic factors in nonsmokers with age-related macular degeneration revealed through genome-wide gene-environment interaction analysis.	Age-related macular degeneration	1,207 European ancestry cases, 686 European ancestry controls	122 European ancestry cases, 86 European ancestry controls	6p21.33	RDBP, CFB, ATF6B, STK19	rs522162-?	0.93	2E-10		2.33	[1.82-3.03]	Affymetrix [2543887] (imputed)	N
609	chr6_qbl_hap6	3214480	3214481	rs550513	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	SKIV2L, CFB, NELFE, C2, C2-AS1, XXbac-BPG116M5.17, MIR1236	rs550513-T	0.07981928	1E-19	(Complement factor B)	0.702	[0.55-0.85] unit increase	Affymetrix [509946]	N
609	chr6_qbl_hap6	3214859	3214860	rs4151665	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs4151665-C	0.06	7E-15	(Beta-defensin 119, DEFB119.13455.10.3)	0.4	[0.3-0.5] unit increase	Affymetrix [10572788] (imputed)	N
609	chr6_qbl_hap6	3215268	3215269	rs2072632	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SPAG11B	5,366 Icelandic ancestry individuals	NA	6p21.33		rs2072632-A	0.2866	3E-45		0.290078	[0.25-0.33] unit decrease	Illumina [7506463] (imputed)	N
609	chr6_qbl_hap6	3216047	3216048	rs630379	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	NELFE	rs630379-A	NR	1E-14		0.0231756	[0.017-0.029] unit decrease	Affymetrix [319769] (imputed)	N
609	chr6_qbl_hap6	3216047	3216048	rs630379	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	NELFE	rs630379-A	NR	2E-13		0.0221378	[0.016-0.028] unit decrease	Affymetrix [319769] (imputed)	N
609	chr6_qbl_hap6	3216047	3216048	rs630379	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	NELFE	rs630379-A	NR	2E-23		0.0325922	[0.026-0.039] unit increase	Affymetrix [323123] (imputed)	N
609	chr6_qbl_hap6	3216047	3216048	rs630379	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	NELFE	rs630379-A	NR	5E-17		0.0254771	[0.02-0.031] unit decrease	Affymetrix [321169] (imputed)	N
609	chr6_qbl_hap6	3217502	3217502	rs35917342	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs35917342-AT	0.101	1E-203	(Neutrophil collagenase, MMP8.2954.56.2)	1.18	[1.1-1.26] unit increase	Affymetrix [10572788] (imputed)	N
609	chr6_qbl_hap6	3218115	3218116	rs9501161	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs9501161-A	0.086	1E-11	(Complement factor B, CFB.4129.72.1)	0.29	[0.21-0.37] unit decrease	Affymetrix [10572788] (imputed)	N
609	chr6_qbl_hap6	3219636	3219637	rs80082277	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	6p21.33	SKIV2L, NELFE, MIR1236	rs80082277-C	0.02	3E-8	(EA)	0.0536	[0.035-0.073] unit decrease	Affymetrix, Illumina [10537485] (imputed)	N
609	chr6_qbl_hap6	3221130	3221131	rs440454	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	6p21.33		rs440454-?	NR	5E-9		0.0056767	[0.0038-0.0076] unit decrease	NR [NR]	N
609	chr6_qbl_hap6	3221130	3221131	rs440454	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p21.33	SKIV2L	rs440454-A	NR	2E-10		0.0210807	[0.015-0.028] unit decrease	Affymetrix [323858] (imputed)	N
609	chr6_qbl_hap6	3222479	3222480	rs2280774	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	CYP21A2, NELFE, DXO, TNXB, C2, C2-AS1, XXbac-BPG116M5.17, CFB, MIR1236, SKIV2L, STK19, C4A, C4B, C4B-AS1, RNA5SP206	rs2280774-A	0.3705942	8E-29	(Complement C4b)	0.5048	[0.42-0.59] unit decrease	Affymetrix [509946]	N
609	chr6_qbl_hap6	3222479	3222480	rs2280774	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	CYP21A2, NELFE, DXO, TNXB, C2, C2-AS1, XXbac-BPG116M5.17, CFB, MIR1236, SKIV2L, STK19, C4A, C4B, C4B-AS1, RNA5SP206	rs2280774-A	0.3705942	8E-12	(EA, gp41 C34 peptide, HIV)	0.3064	[0.22-0.39] unit decrease	Affymetrix [509946]	N
609	chr6_qbl_hap6	3222587	3222588	rs419788	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	SKIV2L	rs419788-T	NR	3E-19		0.0298384	[0.023-0.036] unit decrease	Affymetrix [323858] (imputed)	N
609	chr6_qbl_hap6	3222587	3222588	rs419788	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	SKIV2L	rs419788-T	NR	1E-16		0.0274934	[0.021-0.034] unit decrease	Affymetrix [127266] (imputed)	N
609	chr6_qbl_hap6	3223596	3223597	rs35664695	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p21.33	NR	rs35664695-?	NR	6E-17		0.1764	[0.14-0.22] unit increase	Illumina [at least 560000] (imputed)	N
609	chr6_qbl_hap6	3224139	3224140	rs2734331	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	6p21.33	SKIV2L	rs2734331-A	0.97	7E-13	(X-11470)	0.073	[0.053-0.093] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
609	chr6_qbl_hap6	3224229	3224230	rs592229	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	6p21.33		rs592229-G	0.486	2E-28		0.12	[0.1-0.14] % increase	Affymetrix [NR] (imputed)	N
609	chr6_qbl_hap6	3224229	3224230	rs592229	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	SKIV2L	rs592229-G	NR	3E-9		0.0166622	[0.011-0.022] unit decrease	Affymetrix [319769] (imputed)	N
609	chr6_qbl_hap6	3224229	3224230	rs592229	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	SKIV2L	rs592229-G	NR	6E-18		0.0269889	[0.021-0.033] unit decrease	Affymetrix [323858] (imputed)	N
609	chr6_qbl_hap6	3224229	3224230	rs592229	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	SKIV2L	rs592229-G	NR	2E-8		0.0157493	[0.01-0.021] unit decrease	Affymetrix [319769] (imputed)	N
609	chr6_qbl_hap6	3224229	3224230	rs592229	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	SKIV2L	rs592229-G	NR	1E-15		0.0250227	[0.019-0.031] unit decrease	Affymetrix [127266] (imputed)	N
609	chr6_qbl_hap6	3224229	3224230	rs592229	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	SKIV2L	rs592229-G	NR	5E-15		0.023966	[0.018-0.03] unit increase	Affymetrix [323123] (imputed)	N
609	chr6_qbl_hap6	3224229	3224230	rs592229	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p21.33	SKIV2L	rs592229-G	NR	5E-12		0.0214232	[0.015-0.027] unit decrease	Affymetrix [323858] (imputed)	N
609	chr6_qbl_hap6	3224229	3224230	rs592229	25281659	van der Valk RJ	2014-10-03	Hum Mol Genet	A novel common variant in DCST2 is associated with length in early life and height in adulthood.	Infant length	28,238 European ancestry individuals	NA	6p21.33	HLA	rs592229-G	0.43	2E-8		0.048	[0.030-0.066] unit increase	Affymetrix, Illumina [2193675] (imputed)	N
609	chr6_qbl_hap6	3224229	3224230	rs592229	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs592229-G	0.370399655280899	4E-6	(IGP42)	0.1536	[0.088-0.219] unit increase	Illumina [~ 2500000] (imputed)	N
609	chr6_qbl_hap6	3224229	3224230	rs592229	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs592229-G	0.370283129554656	9E-6	(IGP2)	0.1479	[0.083-0.213] unit increase	Illumina [~ 2500000] (imputed)	N
609	chr6_qbl_hap6	3224250	3224251	rs429608	23455636	Fritsche LG	2013-03-03	Nat Genet	Seven new loci associated with age-related macular degeneration.	Age-related macular degeneration	6,713 European ancestry cases, 48,402 European ancestry contols, 110 Southern Indian ancestry cases, 119 Southern Indian ancestry controls, 827 Japanese ancestry cases, 3,323 Japanese ancestry controls	9,070 European ancestry cases, 7,683 European ancestry contols, 461 East Asian ancestry cases, 547 East Asian ancestry controls	6p21.33	CFB, C2	rs429608-G	0.86	4E-89		1.74	[1.68-1.79]	Affymetrix, Illumina [2442884] (imputed)	N
609	chr6_qbl_hap6	3224250	3224251	rs429608	20861866	Kopplin LJ	2010-09-23	Genes Immun	Genome-wide association identifies SKIV2L and MYRIP as protective factors for age-related macular degeneration.	Age-related macular degeneration	684 European ancestry cases, 188 European ancestry controls	1,896 European ancestry cases, 1,866 European ancestry controls	6p21.33	BF, SKIV2L	rs429608-?	NR	5E-15		1.85	[NR]	Affymetrix [> 361556] (imputed)	N
609	chr6_qbl_hap6	3224250	3224251	rs429608	20385819	Chen W	2010-04-12	Proc Natl Acad Sci U S A	Genetic variants near TIMP3 and high-density lipoprotein-associated loci influence susceptibility to age-related macular degeneration.	Age-related macular degeneration	2,157 European ancestry cases, 1,150 European ancestry controls	7,892 European ancestry cases, 5,998 European ancestry controls, 678 Japanese ancestry cases, 336 Japanese ancestry controls	6p21.33	CFB, C2	rs429608-G	0.842	3E-21		2.16	[1.84-2.53]	Illumina [~ 2500000] (imputed)	N
609	chr6_qbl_hap6	3224925	3224926	rs401775	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p21.33	NR	rs401775-?	NR	3E-12		0.1102	[0.079-0.141] unit increase	Illumina [at least 560000] (imputed)	N
609	chr6_qbl_hap6	3226949	3226950	rs406936	23577725	Naj AC	2013-05-01	Ann Hum Genet	Genetic factors in nonsmokers with age-related macular degeneration revealed through genome-wide gene-environment interaction analysis.	Age-related macular degeneration	1,207 European ancestry cases, 686 European ancestry controls	122 European ancestry cases, 86 European ancestry controls	6p21.33	SKIV2L	rs406936-?	0.10	7E-7		1.75	[1.41-2.17]	Affymetrix [2543887] (imputed)	N
609	chr6_qbl_hap6	3227306	3227307	rs492899	31241743	Jaeger M	2019-04-24	J Infect Dis	A Genome-Wide Functional Genomics Approach Identifies Susceptibility Pathways to Fungal Bloodstream Infection in Humans.	Candidemia	161 European ancestry cases, 152 European ancestry controls	NA	6p21.33	NR	rs492899-?	NR	2E-6		5.5555553	[NR]	Illumina [5326313] (imputed)	N
609	chr6_qbl_hap6	3227306	3227307	rs492899	30854688	Wang C	2019-03-10	Hepatology	Genome Wide Association Studies of Specific Antinuclear Autoantibody Sub-phenotypes in Primary Biliary Cholangitis.	Anti-sp100 seropositivity in primary biliary cholangitis	211 Han Chinese ancestry cases, 711 Han Chinese ancestry controls	234 Han Chinese ancestry cases, 1,018 Han Chinese ancestry controls	6p21.33	NR	rs492899-G	0.193	3E-22		2.9	[2.34-3.66]	Illumina [794531]	N
609	chr6_qbl_hap6	3227765	3227766	rs9296004	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TYK2	5,361 Icelandic ancestry individuals	NA	6p21.33		rs9296004-C	0.09963	6E-11		0.203156	[0.14-0.26] unit increase	Illumina [7506463] (imputed)	N
609	chr6_qbl_hap6	3227765	3227766	rs9296004	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LDLRAD4	5,362 Icelandic ancestry individuals	NA	6p21.33		rs9296004-C	0.09963	7E-11		0.200339	[0.14-0.26] unit increase	Illumina [7506463] (imputed)	N
609	chr6_qbl_hap6	3227765	3227766	rs9296004	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ISG15	5,349 Icelandic ancestry individuals	NA	6p21.33		rs9296004-C	0.09963	8E-62		0.488305	[0.43-0.55] unit decrease	Illumina [7506463] (imputed)	N
609	chr6_qbl_hap6	3227765	3227766	rs9296004	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL18RAP	5,360 Icelandic ancestry individuals	NA	6p21.33		rs9296004-C	0.09963	6E-30		0.350014	[0.29-0.41] unit decrease	Illumina [7506463] (imputed)	N
609	chr6_qbl_hap6	3227765	3227766	rs9296004	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FTMT	5,365 Icelandic ancestry individuals	NA	6p21.33		rs9296004-C	0.09963	4E-81		0.580682	[0.52-0.64] unit increase	Illumina [7506463] (imputed)	N
609	chr6_qbl_hap6	3227765	3227766	rs9296004	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DEFB119	5,366 Icelandic ancestry individuals	NA	6p21.33		rs9296004-C	0.09963	3E-94		0.623132	[0.56-0.68] unit increase	Illumina [7506463] (imputed)	N
609	chr6_qbl_hap6	3227765	3227766	rs9296004	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C4A;C4B	5,353 Icelandic ancestry individuals	NA	6p21.33		rs9296004-C	0.09963	1E-39		0.393378	[0.33-0.45] unit increase	Illumina [7506463] (imputed)	N
609	chr6_qbl_hap6	3227765	3227766	rs9296004	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	SKIV2L	rs9296004-C	0.082	3E-40	(Beta-defensin 119, DEFB119.13455.10.3)	0.61	[0.51-0.71] unit increase	Affymetrix [10572788] (imputed)	N
609	chr6_qbl_hap6	3229355	3229356	rs3911893	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DEFB119	5,366 Icelandic ancestry individuals	NA	6p21.33		rs3911893-A	0.0572	2E-35		0.507255	[0.43-0.59] unit increase	Illumina [7506463] (imputed)	N
609	chr6_qbl_hap6	3229538	3229539	rs106287	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	6p21.33	SKIV2L	rs106287-A	0.0424830000000001	8E-12		0.03863092	[0.028-0.05] unit decrease	Affymetrix [93095623] (imputed)	N
609	chr6_qbl_hap6	3229845	3229846	rs34241101	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6p21.33	NR	rs34241101-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
609	chr6_qbl_hap6	3229845	3229846	rs34241101	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Strep throat	52,487 European ancestry cases, 22,017 European ancestry controls	NA	6p21.33	NR	rs34241101-?	NR	2E-7		0.0548	[0.034-0.076] unit increase	Illumina [at least 560000] (imputed)	N
609	chr6_qbl_hap6	3230456	3230457	rs410851	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	6p21.33		rs410851-C	NR	1E-16		0.0169	[0.013-0.021] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
609	chr6_qbl_hap6	3230456	3230457	rs410851	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	6p21.33		rs410851-C	NR	3E-21		0.02	[0.016-0.024] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
609	chr6_qbl_hap6	3230456	3230457	rs410851	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	SKIV2L	rs410851-T	NR	5E-12		0.0206765	[0.015-0.027] unit increase	Affymetrix [321016] (imputed)	N
609	chr6_qbl_hap6	3231908	3231909	rs45531831	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	TNXB	rs45531831-T	0.023	3E-116	(Tenascin-X, TNXB.5698.60.3)	1.75	[1.59-1.91] unit decrease	Affymetrix [10572788] (imputed)	N
609	chr6_qbl_hap6	3233133	3233134	rs41267118	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL18RAP	5,360 Icelandic ancestry individuals	NA	6p21.33		rs41267118-A	0.04712	9E-9		0.259513	[0.17-0.35] unit decrease	Illumina [7506463] (imputed)	N
609	chr6_qbl_hap6	3233312	3233313	rs115085021	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CFB	5,365 Icelandic ancestry individuals	NA	6p21.33		rs115085021-C	0.03863	6E-25		0.502999	[0.41-0.6] unit increase	Illumina [7506463] (imputed)	N
609	chr6_qbl_hap6	3234006	3234007	rs75393409	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs75393409-?		2E-7		1.06	[1.04-1.09]	Illumina [7645193] (imputed)	N
609	chr6_qbl_hap6	3234006	3234007	rs75393409	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs75393409-?		4E-8		1.78	[1.45-2.18]	Illumina [7645193] (imputed)	N
609	chr6_qbl_hap6	3234685	3234686	rs389884	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FTMT	5,365 Icelandic ancestry individuals	NA	6p21.33		rs389884-G	0.08177	6E-137		0.828667	[0.76-0.89] unit decrease	Illumina [7506463] (imputed)	N
609	chr6_qbl_hap6	3234685	3234686	rs389884	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p21.33	STK19	rs389884-G	0.342	1E-32				Illumina [118177]	N
609	chr6_qbl_hap6	3234685	3234686	rs389884	23263863	Li J	2012-12-20	Hum Mol Genet	GWAS of blood cell traits identifies novel associated loci and epistatic interactions in Caucasian and African-American children.	Hematology traits	7,943 African American children, 6,234 European ancestry children	NA	6p21.33	CFB, STK19, ZBTB12	rs389884-C	0.0953	2E-8	(EA, WBC)	0.0254	[0.017-0.034] unit decrease	Illumina [544917]	N
609	chr6_qbl_hap6	3234685	3234686	rs389884	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.33	intergenic	rs389884-C	0.1148	8E-66		3.65	[NR]	Illumina [242824]	N
609	chr6_qbl_hap6	3235345	3235346	rs387608	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SIGLEC8	5,359 Icelandic ancestry individuals	NA	6p21.33		rs387608-A	0.1429	6E-12		0.181754	[0.13-0.23] unit increase	Illumina [7506463] (imputed)	N
609	chr6_qbl_hap6	3235345	3235346	rs387608	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PCDHGB4	5,352 Icelandic ancestry individuals	NA	6p21.33		rs387608-A	0.1429	2E-12		0.184372	[0.13-0.24] unit increase	Illumina [7506463] (imputed)	N
609	chr6_qbl_hap6	3235345	3235346	rs387608	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein OSM	5,348 Icelandic ancestry individuals	NA	6p21.33		rs387608-A	0.1429	4E-12		0.174055	[0.12-0.22] unit increase	Illumina [7506463] (imputed)	N
609	chr6_qbl_hap6	3235345	3235346	rs387608	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DES	5,344 Icelandic ancestry individuals	NA	6p21.33		rs387608-A	0.1429	5E-14		0.190553	[0.14-0.24] unit increase	Illumina [7506463] (imputed)	N
609	chr6_qbl_hap6	3235345	3235346	rs387608	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CFP	5,352 Icelandic ancestry individuals	NA	6p21.33		rs387608-A	0.1429	1E-15		0.207744	[0.16-0.26] unit decrease	Illumina [7506463] (imputed)	N
609	chr6_qbl_hap6	3235345	3235346	rs387608	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	SKIV2L, C4B, TNXB, DXO, STK19, C4A, C4A-AS1, CYP21A1P, TNXA, AL645922.1, STK19B, CYP21A2, C4B-AS1	rs387608-A	0.1214859	3E-25	(gp41 C34 peptide, HIV)	0.6703	[0.55-0.79] unit increase	Affymetrix [509946]	N
609	chr6_qbl_hap6	3235417	3235418	rs116420479	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	6p21.33	HLA region	rs116420479-?	NR	3E-8	(EA)			Affymetrix, Illumina [10537485] (imputed)	N
609	chr6_qbl_hap6	3235417	3235418	rs116420479	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	6p21.33	HLA region	rs116420479-?	NR	1E-8				Affymetrix, Illumina [10537485] (imputed)	N
609	chr6_qbl_hap6	3237020	3237021	rs41315812	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein USP25	5,360 Icelandic ancestry individuals	NA	6p21.33		rs41315812-T	0.0381	4E-157		1.22583	[1.14-1.32] unit increase	Illumina [7506463] (imputed)	N
609	chr6_qbl_hap6	3237825	3237826	rs1738434	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.33		rs1738434-G	0.595	1E-62				Affymetrix [10369434] (imputed)	N
609	chr6_qbl_hap6	3237825	3237826	rs1738434	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	STK19	rs1738434-T	NR	7E-11		0.0207324	[0.014-0.027] unit increase	Affymetrix [323858] (imputed)	N
609	chr6_qbl_hap6	3237825	3237826	rs1738434	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	STK19	rs1738434-T	NR	3E-9		0.0189414	[0.013-0.025] unit increase	Affymetrix [127266] (imputed)	N
609	chr6_qbl_hap6	3237825	3237826	rs1738434	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	STK19	rs1738434-T	NR	2E-10		0.0197638	[0.014-0.026] unit decrease	Affymetrix [323123] (imputed)	N
609	chr6_qbl_hap6	3237825	3237826	rs1738434	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p21.33	STK19	rs1738434-T	NR	4E-9		0.0185989	[0.012-0.025] unit increase	Affymetrix [323858] (imputed)	N
609	chr6_qbl_hap6	3237825	3237826	rs1738434	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	STK19	rs1738434-T	0.412	4E-34	(Trypsin-3, PRSS3.3479.71.2)	0.3	[0.26-0.34] unit decrease	Affymetrix [10572788] (imputed)	N
609	chr6_qbl_hap6	3239019	3239020	rs12524149	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs12524149-C	0.677	9E-49				Affymetrix [10369434] (imputed)	N
609	chr6_qbl_hap6	3239435	3239436	rs2734325	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	6p21.33	STK19	rs2734325-T	NR	3E-7	(EA)	1.0615711	[1.04-1.08]	Illumina [6627481] (imputed)	N
609	chr6_qbl_hap6	3240403	3240404	rs6941112	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	STK19	rs6941112-A	NR	3E-9		0.019993	[0.013-0.027] unit decrease	Affymetrix [323123] (imputed)	N
609	chr6_qbl_hap6	3240403	3240404	rs6941112	34011352	Schwarm C	2021-05-19	Orphanet J Rare Dis	Identification of two novel bullous pemphigoid- associated alleles, HLA-DQA1*05:05 and -DRB1*07:01, in Germans.	Bullous pemphigoid	438 German cases, 417 German controls	NA	6p21.33	STK19	rs6941112-?	NR	7E-6		0.498031	[0.28-0.71] unit increase	Affymetrix [up to 386296] (imputed)	N
609	chr6_qbl_hap6	3240403	3240404	rs6941112	31972866	Nagel M	2020-01-23	Acta Psychiatr Scand	Genome-wide association study of the sensitivity to environmental stress and adversity (SESA) neuroticism cluster.	Sensitivity to environmental stress and adversity	351,827 European ancestry individuals	NA	6p21.33	NR	rs6941112-A	NR	6E-12		0.01765	NR unit increase	NR [7259579]	N
609	chr6_qbl_hap6	3240763	3240764	rs77143442	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs77143442-C	0.023	3E-27	(Interleukin-21, IL21.7124.18.3)	0.9	[0.74-1.06] unit decrease	Affymetrix [10572788] (imputed)	N
609	chr6_qbl_hap6	3240816	3240817	rs181705462	26691988	Fritsche LG	2015-12-21	Nat Genet	A large genome-wide association study of age-related macular degeneration highlights contributions of rare and common variants.	Advanced age-related macular degeneration	16,144 European ancestry cases, 17,832 European ancestry controls	473 Asian ancestry cases, 1,099 Asian ancestry controls, 52 African ancestry cases, 361 African ancestry cases, 254 other non-European ancestry cases, 694 other non-European ancestry controls	6p21.33	C2, CFB, SKIV2L	rs181705462-?	NR	3E-10	(EA)	1.55		Illumina [12023830] (imputed)	N
609	chr6_qbl_hap6	3241249	3241250	rs389883	30626913	Amare AT	2019-01-09	Mol Psychiatry	Bivariate genome-wide association analyses of the broad depression phenotype combined with major depressive disorder, bipolar disorder or schizophrenia reveal eight novel genetic loci for depression.	Broad depression or schizophrenia	9,240 European ancestry broad depression cases, 9,519 European ancestry broad depression controls, 51,258 European ancestry individuals, 36,989 European and East Asian ancestry schizophrenia cases, 113,075 European and East Asian ancestry schizophrenia controls	322,580 individuals	6p21.33	STK19	rs389883-T	0.68	1E-12				Affymetrix, Illumina [at least 918921] (imputed)	N
609	chr6_qbl_hap6	3241706	3241707	rs114632474	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		STK19	rs114632474-?	NR	3E-10		1.8011	[NR] unit decrease	Affymetrix [NR] (imputed)	N
609	chr6_qbl_hap6	3266059	3266060	rs199619373	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	6p21.33	PRRC2A	rs199619373-A	0.1293	4E-8	(S1P d16:1)	0.1068	[0.069-0.144] unit decrease	Illumina [~ 47000000] (imputed)	N
609	chr6_qbl_hap6	3268144	3268145	rs28641793	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	6p21.33	NR	rs28641793-A	0.011961	6E-14		0.0840715	[0.061-0.107] unit increase	Affymetrix [16585745] (imputed)	N
609	chr6_qbl_hap6	3268512	3268513	rs28361034	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	C4A	rs28361034-G	0.722	7E-36	(Glutamate receptor 4, GRIA4.10760.107.3)	0.36	[0.3-0.42] unit increase	Affymetrix [10572788] (imputed)	N
609	chr6_qbl_hap6	3268512	3268513	rs28361034	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	C4A	rs28361034-G	0.722	1E-18	(Vesicle-fusing ATPase, NSF.13992.12.3)	0.26	[0.2-0.32] unit increase	Affymetrix [10572788] (imputed)	N
609	chr6_qbl_hap6	3269046	3269047	rs554383943	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.33	NR	rs554383943-C	0.986	2E-13		3.634	[3.29-3.98]	Illumina [11270530] (imputed)	N
609	chr6_qbl_hap6	3275509	3275510	rs34214527	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	6p21.33	Intergenic	rs34214527-C	0.9156	4E-10		0.0256	[0.018-0.034] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
609	chr6_qbl_hap6	3275628	3275629	rs2856448	35264221	Caron B	2022-03-09	Genome Med	Integrative genetic and immune cell analysis of plasma proteins in healthy donors identifies novel associations involving primary immune deficiency genes.	TN X plasma levels	400 French ancestry individuals	NA	6p21.33		rs2856448-G	NR	1E-38		0.685	[0.64-0.73] ng/mL increase	Illumina [5201092] (imputed)	N
609	chr6_qbl_hap6	3275881	3275882	rs433061	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	6p21.33	NR	rs433061-A	0.111550236715686	4E-17		0.012269953	[0.0094-0.0151] unit decrease	NR [NR]	N
609	chr6_qbl_hap6	3275881	3275882	rs433061	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	6p21.33	NR	rs433061-?	NR	8E-6		0.0786	[0.044-0.113] unit decrease	Illumina [at least 560000] (imputed)	N
610	chr6_qbl_hap6	3278660	3278661	rs146280229	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.33	NR	rs146280229-C	0.007	1E-11	(conditional)	1.815	[1.64-1.99]	Illumina [11270530] (imputed)	N
610	chr6_qbl_hap6	3280435	3280436	rs115521560	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL18RAP	5,360 Icelandic ancestry individuals	NA	6p21.33		rs115521560-C	0.07408	4E-6		0.168353	[0.097-0.24] unit decrease	Illumina [7506463] (imputed)	N
610	chr6_qbl_hap6	3280435	3280436	rs115521560	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C4A;C4B	5,353 Icelandic ancestry individuals	NA	6p21.33		rs115521560-C	0.07408	6E-20		0.322359	[0.25-0.39] unit decrease	Illumina [7506463] (imputed)	N
610	chr6_qbl_hap6	3280565	3280566	rs41316748	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	6p21.33	NR	rs41316748-C	0.0430592148955273	1E-8		0.012935713	[0.0085-0.0174] unit increase	NR [NR]	N
610	chr6_qbl_hap6	3280565	3280566	rs41316748	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	6p21.33	NR	rs41316748-C	0.0430592148955273	2E-8		0.021394862	[0.014-0.029] unit increase	NR [NR]	N
610	chr6_qbl_hap6	3280565	3280566	rs41316748	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	6p21.33	NR	rs41316748-C	0.0430592148955273	2E-8		0.0137647055	[0.0089-0.0186] unit increase	NR [NR]	N
610	chr6_qbl_hap6	3280565	3280566	rs41316748	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	TNXB	rs41316748-C	0.042	2E-114	(Ubiquitin carboxyl-terminal hydrolase 25, USP25.9215.117.3)	1.31	[1.19-1.43] unit increase	Affymetrix [10572788] (imputed)	N
610	chr6_qbl_hap6	3280565	3280566	rs41316748	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p21.33	TNXB	rs41316748-C	0.04	1E-12		1.19	[1.15-1.23]	Illumina [at least 560000] (imputed)	N
610	chr6_qbl_hap6	3280799	3280800	rs2857009	23028341	Yang X	2012-09-13	PLoS Genet	Genome-wide association study for serum complement C3 and C4 levels in healthy Chinese subjects.	Complement C3 and C4 levels	1,999 Han Chinese ancestry male individuals	1,496 Han Chinese ancestry male individuals	6p21.33	C4	rs2857009-G	0.20	1E-22	(Serum level of C4)	0.08	[0.060-0.100] g/L increase	Illumina [1940245] (imputed)	N
610	chr6_qbl_hap6	3282014	3282015	rs34562262	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RACGAP1	5,360 Icelandic ancestry individuals	NA	6p21.33		rs34562262-C	0.04252	7E-83		0.878733	[0.79-0.97] unit decrease	Illumina [7506463] (imputed)	N
610	chr6_qbl_hap6	3282014	3282015	rs34562262	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL18RAP	5,360 Icelandic ancestry individuals	NA	6p21.33		rs34562262-C	0.04252	3E-89		0.913858	[0.82-1] unit decrease	Illumina [7506463] (imputed)	N
610	chr6_qbl_hap6	3282014	3282015	rs34562262	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	6p21.33	TNXB	rs34562262-C	0.059314	9E-12		0.03548271	[0.025-0.046] unit increase	Affymetrix [93095623] (imputed)	N
610	chr6_qbl_hap6	3282014	3282015	rs34562262	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	6p21.33	NR	rs34562262-?		2E-15	(AGER)	0.6405	[NR] unit decrease	Illumina [NR]	N
610	chr6_qbl_hap6	3282183	3282184	rs11969759	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RACGAP1	5,360 Icelandic ancestry individuals	NA	6p21.33		rs11969759-T	0.03907	1E-34		0.606915	[0.51-0.7] unit decrease	Illumina [7506463] (imputed)	N
610	chr6_qbl_hap6	3282183	3282184	rs11969759	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL18RAP	5,360 Icelandic ancestry individuals	NA	6p21.33		rs11969759-T	0.03907	2E-51		0.736692	[0.64-0.83] unit decrease	Illumina [7506463] (imputed)	N
610	chr6_qbl_hap6	3282183	3282184	rs11969759	30636644	Nazarian A	2019-01-12	Alzheimers Res Ther	Genome-wide analysis of genetic predisposition to Alzheimer's disease and related sex disparities.	Alzheimer's disease	952 European ancestry male cases, 1,789 European ancestry female cases, 6,337 European ancestry male controls, 8,402 European ancestry female controls	NA	6p21.33	TNXB	rs11969759-?	NR	2E-6	(females)	1.6222337		Affymetrix, Illumina [2928658] (imputed)	N
610	chr6_qbl_hap6	3285885	3285886	rs6937318	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	TNXB	rs6937318-T	NR	9E-16		0.0245113	[0.019-0.03] unit increase	Affymetrix [323123] (imputed)	N
610	chr6_qbl_hap6	3285885	3285886	rs6937318	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.33		rs6937318-C	0.513236	2E-15		1.0343082	[1.03-1.04]	Affymetrix, Illumina [9851866] (imputed)	N
610	chr6_qbl_hap6	3286916	3286917	rs369637	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	TNXB	rs369637-T	NR	9E-9		0.0231685	[0.015-0.031] unit increase	Affymetrix [323123] (imputed)	N
610	chr6_qbl_hap6	3286916	3286917	rs369637	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.33	ABHD16A, AGER, AGPAT1, AIF1, APOM, ATF6B, ATP6V1G2, ATP6V1G2-DDX39B, BAG6, BTNL2, C2, C2-AS1, C4A, C4B, C4B_2, C6orf10, C6orf15, C6orf25, C6orf47, C6orf48, CCHCR1, CDSN, CFB, CLIC1, CSNK2B, CYP21A1P, CYP21A2, DDAH2, DDX39B, DXO, EGFL8, EHMT2, FKBPL, GPANK1, GPSM3, HCG23, HCG26, HCG27, HCP5, HLA-B, HLA-C, HLA-DOB, HLA-DQA1, HLA-DQA2, HLA-DQB1, HLA-DQB2, HLA-DRA, HLA-DRB1, HLA-DRB5, HLA-DRB6, HSPA1A, HSPA1B, HSPA1L, LOC100507547, LSM2, LST1, LTA, LTB, LY6G5B, LY6G5C, LY6G6C, LY6G6D, LY6G6E, LY6G6F, MCCD1, MICA, MICB, MIR1236, MIR3135B, MIR4646, MIR6721, MIR6832, MIR6833, MIR6891, MSH5, MSH5-SAPCD1, NCR3, NELFE, NEU1, NFKBIL1, NOTCH4, PBX2, POU5F1, PPT2, PPT2-EGFL8, PRRC2A, PRRT1, PSMB8, PSMB8-AS1, PSMB9, PSORS1C1, PSORS1C2, PSORS1C3, RNF5, RNF5P1, SAPCD1, SAPCD1-AS1, SKIV2L, SLC44A4, SNORA38, SNORD117, SNORD48, SNORD52, SNORD84, STK19, TAP1, TAP2, TCF19, TNF, TNXA, TNXB, VARS, VWA7, ZBTB12	rs369637-?		2E-10		1.098901	[1.06-1.12]	Affymetrix, Illumina [NR]	N
610	chr6_qbl_hap6	3287160	3287161	rs1009382	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:0_[M+H]1+/Phosphatidylethanolamine_35:0_[M+H]1+/Phosphatidate_37:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	6p21.33		rs1009382-C	NR	4E-10		0.0841202	[0.058-0.111] unit decrease	Affymetrix [87696910] (imputed)	N
610	chr6_qbl_hap6	3287861	3287862	rs12198173	20041166	Fellay J	2009-12-24	PLoS Genet	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	6p21.33	TNXB	rs12198173-?	NR	3E-6	(progression)			Illumina [NR]	N
610	chr6_qbl_hap6	3289201	3289202	rs1150758	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p21.33	TNXB	rs1150758-C	NR	1E-10		0.0261542	[0.018-0.034] unit decrease	Affymetrix [323858] (imputed)	N
610	chr6_qbl_hap6	3290257	3290258	rs1150757	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	6p21.33	NR	rs1150757-A	0.111940064634901	1E-14		0.014838932	[0.011-0.019] unit decrease	NR [NR]	N
610	chr6_qbl_hap6	3290257	3290258	rs1150757	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	6p21.33	NR	rs1150757-A	0.111940064634901	3E-14		0.019090127	[0.014-0.024] unit decrease	NR [NR]	N
610	chr6_qbl_hap6	3290257	3290258	rs1150757	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	6p21.33	NR	rs1150757-A	0.111940064634901	1E-14		0.012505894	[0.0093-0.0157] unit decrease	NR [NR]	N
610	chr6_qbl_hap6	3290257	3290258	rs1150757	29769526	Estrada K	2018-05-16	Nat Commun	A whole-genome sequence study identifies genetic risk factors for neuromyelitis optica.	Neuromyelitis optica (AQP4-IgG-positive)	66 European ancestry cases, 784 European ancestry controls	66 European ancestry cases, 460 European ancestry controls	6p21.33	C4A, C4B	rs1150757-A	0.1	3E-16		4.66	[3.22-6.74]	Affymetrix [6804788] (imputed)	N
610	chr6_qbl_hap6	3290257	3290258	rs1150757	29769526	Estrada K	2018-05-16	Nat Commun	A whole-genome sequence study identifies genetic risk factors for neuromyelitis optica.	Neuromyelitis optica	66 European ancestry AQP4-IgG antibody seropositive cases, 63 European ancestry AQP4-IgG antibody seronegative cases, 784 European ancestry controls	66 European ancestry AQP4-IgG antibody seropositive cases, 20 European ancestry AQP4-IgG antibody seronegative cases, 460 European ancestry controls	6p21.33	C4A, C4B	rs1150757-A	0.10	7E-12		2.86	[1.98-4.14]	Affymetrix [6804788] (imputed)	N
610	chr6_qbl_hap6	3290257	3290258	rs1150757	27399966	Morris DL	2016-07-11	Nat Genet	Genome-wide association meta-analysis in Chinese and European individuals identifies ten new loci associated with systemic lupus erythematosus.	Systemic lupus erythematosus	1,659 Chinese ancestry cases, 3,398 Chinese ancestry controls, 4,036 European ancestry cases, 6,959 European ancestry controls	3,043 Chinese ancestry cases, 5,074 Chinese ancestry controls, 2,643 European ancestry cases, 9,032 European ancestry controls	6p21.33	MHC class III	rs1150757-?	0.092	2E-101	(EA)	2.53	[NR]	NR [6344733] (imputed)	N
610	chr6_qbl_hap6	3290257	3290258	rs1150757	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	NA	6p21.33	TNXB	rs1150757-A		6E-107		2.33	[NR]	Illumina [> 644674] (imputed)	N
610	chr6_qbl_hap6	3291752	3291753	rs9267797	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs9267797-T	0.015	7E-94	(Tenascin-X, TNXB.5698.60.3)	1.97	[1.77-2.17] unit increase	Affymetrix [10572788] (imputed)	N
610	chr6_qbl_hap6	3293795	3293796	rs204883	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SURF1	5,347 Icelandic ancestry individuals	NA	6p21.33		rs204883-A	0.3642	4E-14		0.138805	[0.1-0.17] unit decrease	Illumina [7506463] (imputed)	N
610	chr6_qbl_hap6	3293795	3293796	rs204883	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	6p21.33	NR	rs204883-A	0.404749301755246	2E-9		0.005591649	[0.0038-0.0074] unit increase	NR [NR]	N
610	chr6_qbl_hap6	3293795	3293796	rs204883	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	6p21.33	Intergenic	rs204883-A	0.414	1E-8	(MTAG)	0.0096	[0.0063-0.0129] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
610	chr6_qbl_hap6	3293795	3293796	rs204883	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	6p21.33	Intergenic	rs204883-A	0.3876	1E-10	(MTAG)	0.0151	[0.01-0.02] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
610	chr6_qbl_hap6	3293795	3293796	rs204883	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	6p21.33	Intergenic	rs204883-A	0.3876	7E-9		0.017	[0.011-0.023] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
610	chr6_qbl_hap6	3294668	3294669	rs1265889	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Nephrotic syndrome	775 European ancestry cases, 475,255 European ancestry controls, 1,314 East Asian ancestry cases, 177,412 East Asian ancestry controls	NA	6p21.33		rs1265889-A	NR	2E-16		0.524	[0.4-0.65] unit increase	Affymetrix, Illumina [25844401] (imputed)	N
610	chr6_qbl_hap6	3294996	3294997	rs3117189	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FTMT	5,365 Icelandic ancestry individuals	NA	6p21.33		rs3117189-A	0.2078	7E-41		0.308372	[0.26-0.35] unit decrease	Illumina [7506463] (imputed)	N
610	chr6_qbl_hap6	3299585	3299586	rs1150755	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	6p21.33	TNXB	rs1150755-?	NR	6E-117		1.3	[1.19-1.41]	Illumina [at least 5000000] (imputed)	N
610	chr6_qbl_hap6	3301639	3301640	rs204881	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p21.33	NR	rs204881-?	NR	5E-14		0.1561	[0.12-0.2] unit increase	Illumina [at least 560000] (imputed)	N
610	chr6_qbl_hap6	3305886	3305887	rs2021783	25249183	Lu X	2014-09-23	Hum Mol Genet	Genome-wide association study in Chinese identifies novel loci for blood pressure and hypertension.	Systolic blood pressure	11,816 Han Chinese ancestry individuals	69,146 Han Chinese ancestry individuals	6p21.33	CYP21A2	rs2021783-C	0.79	3E-9		0.68	[0.44-0.92] unit increase	Affymetrix, Illumina [2485448] (imputed)	N
610	chr6_qbl_hap6	3305886	3305887	rs2021783	25249183	Lu X	2014-09-23	Hum Mol Genet	Genome-wide association study in Chinese identifies novel loci for blood pressure and hypertension.	Hypertension	5,065 Han Chinese ancestry cases, 4,404 Han Chinese ancestry controls	29,799 Han Chinese ancestry cases, 39,347 Han Chinese ancestry controls	6p21.33	CYP21A2	rs2021783-C	0.79	4E-11				Affymetrix, Illumina [2485448] (imputed)	N
610	chr6_qbl_hap6	3305886	3305887	rs2021783	25249183	Lu X	2014-09-23	Hum Mol Genet	Genome-wide association study in Chinese identifies novel loci for blood pressure and hypertension.	Diastolic blood pressure	11,816 Han Chinese ancestry individuals	69,146 Han Chinese ancestry individuals	6p21.33	CYP21A2	rs2021783-C	0.79	2E-12		0.49	[0.35-0.63] unit increase	Affymetrix, Illumina [2485448] (imputed)	N
610	chr6_qbl_hap6	3308291	3308292	rs17201560	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		TNXB	rs17201560-?	NR	3E-10		1.80132	[NR] unit decrease	Affymetrix [NR] (imputed)	N
610	chr6_qbl_hap6	3310445	3310446	rs12211410	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6p21.33		rs12211410-T	0.085	2E-13	(conditional-joint)	0.0185	[0.014-0.023] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
610	chr6_qbl_hap6	3311089	3311090	rs185819	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.33		rs185819-T	0.533	5E-83				Affymetrix [10369434] (imputed)	N
610	chr6_qbl_hap6	3311089	3311090	rs185819	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p21.33		rs185819-T	0.533	1E-58				Affymetrix [10369434] (imputed)	N
610	chr6_qbl_hap6	3311089	3311090	rs185819	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Automobile speeding propensity	404,291 European ancestry individuals	NA	6p21.33	ATF6B	rs185819-T	0.5357	2E-12		0.01581973	[0.011-0.02] unit increase	Affymetrix [11514463] (imputed)	N
610	chr6_qbl_hap6	3311089	3311090	rs185819	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Systolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	6p21.33	TNXB	rs185819-C	0.513	2E-13	(EA, initial)	0.534	[0.39-0.68] unit increase	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
610	chr6_qbl_hap6	3311089	3311090	rs185819	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Systolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	6p21.33	TNXB	rs185819-C	0.513	1E-17		0.365	[0.28-0.45] unit increase	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
610	chr6_qbl_hap6	3311089	3311090	rs185819	18391951	Gudbjartsson DF	2008-04-06	Nat Genet	Many sequence variants affecting diversity of adult human height.	Height	30,968 European ancestry individuals	8,541 European ancestry individuals	6p21.33	HLA class III	rs185819-T	0.52	3E-8		5.2	[3.44-6.96] % s.d. increase	Affymetrix, Illumina [up to 304226]	N
610	chr6_qbl_hap6	3311780	3311781	rs1150754	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	TNXB	rs1150754-T	NR	9E-16		0.0330216	[0.025-0.041] unit decrease	Affymetrix [323858] (imputed)	N
610	chr6_qbl_hap6	3311780	3311781	rs1150754	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	TNXB	rs1150754-T	NR	3E-14		0.0312441	[0.023-0.039] unit decrease	Affymetrix [127266] (imputed)	N
610	chr6_qbl_hap6	3311780	3311781	rs1150754	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Myeloperoxidase levels	21,758 European ancestry individuals	9,173 individuals	6p21.33		rs1150754-T	0.15	7E-9		0.0636	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
610	chr6_qbl_hap6	3311780	3311781	rs1150754	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	6p21.33	TNXB	rs1150754-C	NR	3E-12	(EA)	1.117	[1.09-1.15]	Illumina [6627481] (imputed)	N
610	chr6_qbl_hap6	3311780	3311781	rs1150754	21408207	Chung SA	2011-03-03	PLoS Genet	Differential genetic associations for systemic lupus erythematosus based on anti-dsDNA autoantibody production.	Systemic lupus erythematosus	811 anti-dsDNA positive European ancestry cases, 906 anti-dsDNA negative European ancestry cases, 4,813 European ancestry controls	NA	6p21.33	TNXB	rs1150754-A	0.13	6E-29	(anti-dsDNA +)	2.21	[1.93-2.53]	Illumina [421318] (imputed)	N
610	chr6_qbl_hap6	3370994	3370995	rs204999	23022100	Franceschini N	2012-09-26	Am J Hum Genet	Discovery and fine mapping of serum protein loci through transethnic meta-analysis.	Serum total protein level	Up to 25,539 European ancestry individuals, 10,168 Japanese ancestry individuals	NA		intergenic	rs204999-A	0.74	4E-11		0.0266	[0.019-0.034] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
610	chr6_qbl_hap6	3370994	3370995	rs204999	23022100	Franceschini N	2012-09-26	Am J Hum Genet	Discovery and fine mapping of serum protein loci through transethnic meta-analysis.	Serum total protein level	Up to 25,539 European ancestry individuals, 10,168 Japanese ancestry individuals	NA		intergenic	rs204999-A	0.74	3E-9	(EA)	0.025	[0.017-0.033] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
610	chr6_qbl_hap6	3370994	3370995	rs204999	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA		intergenic	rs204999-G	0.2643	9E-40		2.44	[NR]	Illumina [242824]	N
610	chr6_qbl_hap6	3371529	3371530	rs77619009	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.32		rs77619009-A	0.944	4E-16				Affymetrix [10369434] (imputed)	N
610	chr6_qbl_hap6	3371598	3371599	rs3130277	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	PRRT1	rs3130277-C	NR	2E-8		0.0208014	[0.014-0.028] unit decrease	Affymetrix [323858] (imputed)	N
610	chr6_qbl_hap6	3372038	3372039	rs565981183	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs565981183-CA	0.876	1E-11		1.192	[1.14-1.24]	Illumina [11270530] (imputed)	N
610	chr6_qbl_hap6	3373640	3373641	rs3130279	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL21	5,363 Icelandic ancestry individuals	NA	6p21.32		rs3130279-A	0.207	5E-14		0.174333	[0.13-0.22] unit increase	Illumina [7506463] (imputed)	N
610	chr6_qbl_hap6	3375530	3375531	rs9296009	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	PRRT1	rs9296009-T	0.216	7E-13	(UDP-N-acetylhexosamine pyrophosphorylase, UAP1.13580.2.3)	0.21	[0.15-0.27] unit decrease	Affymetrix [10572788] (imputed)	N
610	chr6_qbl_hap6	3375530	3375531	rs9296009	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	PRRT1	rs9296009-T	0.216	3E-37	(Rac GTPase-activating protein 1, RACGAP1.13587.10.3)	0.37	[0.31-0.43] unit decrease	Affymetrix [10572788] (imputed)	N
610	chr6_qbl_hap6	3375530	3375531	rs9296009	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	PRRT1	rs9296009-T	0.196796488164359	4E-6	(IGP18)	0.1779	[0.1-0.25] unit decrease	Illumina [~ 2500000] (imputed)	N
610	chr6_qbl_hap6	3375530	3375531	rs9296009	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	PRRT1	rs9296009-T	0.19676420855615	4E-6	(IGP25)	0.1773	[0.1-0.25] unit decrease	Illumina [~ 2500000] (imputed)	N
610	chr6_qbl_hap6	3375530	3375531	rs9296009	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	PRRT1	rs9296009-T	0.196432337204109	4E-8	(IGP23)	0.2111	[0.14-0.29] unit decrease	Illumina [~ 2500000] (imputed)	N
610	chr6_qbl_hap6	3376237	3376238	rs28732178	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	6p21.32	NR	rs28732178-?	NR	8E-11		6.496	NR z score decrease	Illumina [at least 830937] (imputed)	N
610	chr6_qbl_hap6	3380911	3380912	rs3131283	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	PRRT1	rs3131283-T	NR	4E-16		0.0353753	[0.027-0.044] unit increase	Affymetrix [323123] (imputed)	N
610	chr6_qbl_hap6	3381727	3381728	rs1053924	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:0_[M+H]1+/Phosphatidylethanolamine_35:0_[M+H]1+/Phosphatidate_37:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	6p21.32		rs1053924-T	NR	3E-10		0.0786544	[0.054-0.103] unit decrease	Affymetrix [87696910] (imputed)	N
610	chr6_qbl_hap6	3383484	3383485	rs3096696	25987655	Fernandez CA	2015-05-18	Blood	Genome-wide analysis links NFATC2 with asparaginase hypersensitivity.	Asparaginase hypersensitivity in acute lymphoblastic leukemia	3,126 child cases	182 child cases	6p21.32	PPT2	rs3096696-A		4E-6		1.478		Affymetrix [NR]	N
610	chr6_qbl_hap6	3388496	3388497	rs3134950	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:0_[M+H]1+/Phosphatidylethanolamine_35:0_[M+H]1+/Phosphatidate_37:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	6p21.32		rs3134950-C	NR	3E-16		0.100569	[0.076-0.125] unit decrease	Affymetrix [87696910] (imputed)	N
610	chr6_qbl_hap6	3388496	3388497	rs3134950	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	6p21.32	EGFL8	rs3134950-A	0.622	1E-8		0.01510972	[0.0099-0.0203] unit decrease	Affymetrix [~ 11515000] (imputed)	N
610	chr6_qbl_hap6	3388496	3388497	rs3134950	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	6p21.32	PPT2	rs3134950-A	0.624	1E-10		0.0079	[0.0055-0.0103] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
610	chr6_qbl_hap6	3388496	3388497	rs3134950	24823311	Guan W	2014-05-13	Circ Cardiovasc Genet	Genome-wide association study of plasma N6 polyunsaturated fatty acids within the cohorts for heart and aging research in genomic epidemiology consortium.	Plasma omega-6 polyunsaturated fatty acid levels (adrenic acid)	8,631 European ancestry individuals	NA	6p21.32	AGPAT1, PPT2	rs3134950-A	0.625	6E-6		0.01	[NR] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
610	chr6_qbl_hap6	3388496	3388497	rs3134950	23362303	Wu JH	2013-01-29	Circ Cardiovasc Genet	Genome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortium.	Oleic acid (18:1n-9) levels	8,961 European ancestry individuals		6p21.32	EGFL8, AGPAT1, PPT2	rs3134950-A	NR	1E-6		0.0945	unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
610	chr6_qbl_hap6	3389413	3389414	rs9267812	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.32		rs9267812-C	0.865	1E-35				Affymetrix [10369434] (imputed)	N
610	chr6_qbl_hap6	3389413	3389414	rs9267812	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.32		rs9267812-C	0.865	2E-29				Affymetrix [10369434] (imputed)	N
610	chr6_qbl_hap6	3389413	3389414	rs9267812	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.32		rs9267812-C	0.865	7E-20				Affymetrix [10369434] (imputed)	N
610	chr6_qbl_hap6	3389413	3389414	rs9267812	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.32		rs9267812-C	0.865	9E-41				Affymetrix [10369434] (imputed)	N
610	chr6_qbl_hap6	3389413	3389414	rs9267812	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p21.32		rs9267812-C	0.865	8E-22				Affymetrix [10369434] (imputed)	N
610	chr6_qbl_hap6	3389413	3389414	rs9267812	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	6p21.32	PPT2	rs9267812-T	0.135386	2E-6		0.021886	[0.013-0.031] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
610	chr6_qbl_hap6	3389413	3389414	rs9267812	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	6p21.32	PPT2	rs9267812-T	0.132705	3E-9		0.022969	[0.015-0.031] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
610	chr6_qbl_hap6	3389413	3389414	rs9267812	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs9267812-T	0.136	1E-30	(Rac GTPase-activating protein 1, RACGAP1.13587.10.3)	0.4	[0.32-0.48] unit decrease	Affymetrix [10572788] (imputed)	N
610	chr6_qbl_hap6	3395529	3395530	rs3096697	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.32	EGFL8	rs3096697-T	0.2054	1E-41		2.58	[NR]	Illumina [242824]	N
610	chr6_qbl_hap6	3397566	3397567	rs1061808	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for LDL particles	115,082 European ancestry individuals	NA	6p21.32		rs1061808-T	0.3719	6E-9		0.0242981	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
610	chr6_qbl_hap6	3397566	3397567	rs1061808	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	6p21.32		rs1061808-G	NR	1E-22		0.0181	[0.015-0.022] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
610	chr6_qbl_hap6	3397566	3397567	rs1061808	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:0_[M+H]1+/Phosphatidylethanolamine_35:0_[M+H]1+/Phosphatidate_37:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	6p21.32		rs1061808-T	NR	1E-15		0.0960224	[0.072-0.12] unit decrease	Affymetrix [87696910] (imputed)	N
610	chr6_qbl_hap6	3397566	3397567	rs1061808	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	6p21.32	AGPAT1	rs1061808-T	0.3698	1E-23		0.25	[0.2-0.3] mmHg decrease	Affymetrix [NR] (imputed)	N
610	chr6_qbl_hap6	3397566	3397567	rs1061808	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs1061808-G	0.631	8E-37	(Tenascin-X, TNXB.5698.60.3)	0.32	[0.28-0.36] unit increase	Affymetrix [10572788] (imputed)	N
610	chr6_qbl_hap6	3397566	3397567	rs1061808	22359512	Demirkan A	2012-02-16	PLoS Genet	Genome-wide association study identifies novel loci associated with circulating phospho- and sphingolipid concentrations.	Phospholipid levels (plasma)	4,034 European ancestry individuals	NA	6p21.32	AGPAT1	rs1061808-?	NR	8E-10	(proportions)	0.9	[NR] % increase	Illumina [NR] (imputed)	N
610	chr6_qbl_hap6	3399564	3399565	rs3130283	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Angina pectoris	30,025 European ancestry cases, 440,906 European ancestry controls, 14,007 East Asian ancestry cases, 145,158 East Asian ancestry controls	NA	6p21.32		rs3130283-C	NR	3E-11		0.0776	[0.055-0.101] unit increase	Affymetrix, Illumina [25842036] (imputed)	N
610	chr6_qbl_hap6	3399564	3399565	rs3130283	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	6p21.32	NR	rs3130283-C	0.8533	6E-27		0.0617	[0.051-0.073] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
610	chr6_qbl_hap6	3399636	3399637	rs114004994	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IFNAR1	5,357 Icelandic ancestry individuals	NA	6p21.32		rs114004994-C	0.04783	3E-14		0.323386	[0.24-0.41] unit decrease	Illumina [7506463] (imputed)	N
610	chr6_qbl_hap6	3399636	3399637	rs114004994	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA	6p21.32	PPT2-EGFL8	rs114004994-?	NR	5E-9		1.80656	[NR] unit decrease	Affymetrix [NR] (imputed)	N
610	chr6_qbl_hap6	3401506	3401507	rs3130284	25987655	Fernandez CA	2015-05-18	Blood	Genome-wide analysis links NFATC2 with asparaginase hypersensitivity.	Asparaginase hypersensitivity in acute lymphoblastic leukemia	3,126 child cases	182 child cases	6p21.32	AGPAT1	rs3130284-C	NR	7E-6		1.464		Affymetrix [NR]	N
610	chr6_qbl_hap6	3406726	3406727	rs2269423	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:0_[M+H]1+/Phosphatidylethanolamine_35:0_[M+H]1+/Phosphatidate_37:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	6p21.32		rs2269423-A	NR	9E-17		0.0987433	[0.075-0.122] unit decrease	Affymetrix [87696910] (imputed)	N
610	chr6_qbl_hap6	3407511	3407512	rs3134945	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.32	RNF5	rs3134945-T	0.2049	2E-40		2.54	[NR]	Illumina [242824]	N
611	chr6_qbl_hap6	3408068	3408070	rs41315238	34782693	Yamada M	2021-11-15	Commun Biol	Genetic loci for lung function in Japanese adults with adjustment for exhaled nitric oxide levels as airway inflammation indicator.	Lung function (FEV1/FVC)	14,061 Japanese ancestry individuals	5,661 Japanese ancestry individuals	6p21.32		rs41315238-A	0.1513	7E-24		0.1542	[0.12-0.18] unit increase	Affymetrix [8587571] (imputed)	N
611	chr6_qbl_hap6	3408176	3408177	rs41268928	26083729	Maruthur NM	2015-06-17	PLoS One	Genetics of Plasma Soluble Receptor for Advanced Glycation End-Products and Cardiovascular Outcomes in a Community-based Population: Results from the Atherosclerosis Risk in Communities Study.	Advanced glycation end-product levels	581 Black individuals, 1,737 European ancestry individuals	NA	6p21.32	RNF5, NOTCH4, AGER	rs41268928-C	0.04	3E-16	(EA)	0.69	unit decrease	Affymetrix [up to 9100000] (imputed)	N
611	chr6_qbl_hap6	3408780	3408781	rs3134943	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.32	RNF5	rs3134943-T	NR	2E-7	(women)	0.0338184	[0.021-0.047] unit increase	Illumina [13520550] (imputed)	N
611	chr6_qbl_hap6	3409050	3409051	rs1062070	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Waist circumference variance	347,158 European ancestry individuals	NA	6p21.32	RNF5	rs1062070-?	NR	7E-12				NR [5554549] (imputed)	N
611	chr6_qbl_hap6	3409050	3409051	rs1062070	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Waist circumference	347,158 European ancestry individuals	NA	6p21.32	RNF5	rs1062070-?	NR	6E-10				NR [5554549] (imputed)	N
611	chr6_qbl_hap6	3410279	3410280	rs2071288	26083729	Maruthur NM	2015-06-17	PLoS One	Genetics of Plasma Soluble Receptor for Advanced Glycation End-Products and Cardiovascular Outcomes in a Community-based Population: Results from the Atherosclerosis Risk in Communities Study.	Advanced glycation end-product levels	581 Black individuals, 1,737 European ancestry individuals	NA	6p21.32	AGER, RNF5, NOTCH4	rs2071288-T	0.1	2E-8	(Blacks)	0.56	unit decrease	Affymetrix [up to 9100000] (imputed)	N
611	chr6_qbl_hap6	3410820	3410821	rs9391855	33766948	Zhu Z	2021-03-25	Eur Respir J	A large-scale genome-wide association analysis of lung function in the Chinese population identifies novel loci and highlights shared genetic etiology with obesity.	Lung function (FEV1/FVC)	100,285 Chinese ancestry individuals	NA	6p21.32		rs9391855-C	0.78	2E-22		0.053	unit decrease	Affymetrix [NR] (imputed)	N
611	chr6_qbl_hap6	3412462	3412463	rs2070600	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein AGER	5,368 Icelandic ancestry individuals	NA	6p21.32		rs2070600-T	0.04774	1E-31		0.516865	[0.43-0.6] unit decrease	Illumina [7506463] (imputed)	N
611	chr6_qbl_hap6	3412462	3412463	rs2070600	33909500	Moll M	2021-04-28	Am J Physiol Lung Cell Mol Physiol	A Systematic Analysis of Protein-altering Exonic Variants in Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease	up to 31,465 European ancestry cases, up to 203,688 European ancestry controls, up to 1,413 African ancestry cases, up to 6,080 African ancestry controls, up to 287 East Asian ancestry cases, up to 7,484 East Asian ancestry controls, up to 61 Hispanic cases, up to 613 Hispanic controls	NA	6p21.32	AGER	rs2070600-C	0.94	1E-16		1.19	[1.15 -1.25]	Illumina [at least 109036]	N
611	chr6_qbl_hap6	3412462	3412463	rs2070600	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs2070600-T	NR	9E-12		1.2804097	[1.19-1.38]	Affymetrix [7846216] (imputed)	N
611	chr6_qbl_hap6	3412462	3412463	rs2070600	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	6p21.32	AGER	rs2070600-C	0.94	1E-17		1.21	[1.15-1.26]	Affymetrix, Illumina [6224355] (imputed)	N
611	chr6_qbl_hap6	3412462	3412463	rs2070600	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	6p21.32	AGER	rs2070600-T	0.0629	2E-45		0.073	[0.063-0.083] unit increase	Affymetrix [19819130] (imputed)	N
611	chr6_qbl_hap6	3412462	3412463	rs2070600	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	6p21.32	AGER	rs2070600-T	0.0629	8E-15		0.0379	[0.028-0.048] unit decrease	Affymetrix [19819130] (imputed)	N
611	chr6_qbl_hap6	3412462	3412463	rs2070600	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	6p21.32	AGER	rs2070600-T	0.0629	3E-189		0.1452	[0.14-0.15] unit increase	Affymetrix [19819130] (imputed)	N
611	chr6_qbl_hap6	3412462	3412463	rs2070600	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	6p21.32	AGER	rs2070600-T	0.0629	5E-11		0.0318	[0.022-0.041] unit increase	Affymetrix [19819130] (imputed)	N
611	chr6_qbl_hap6	3412462	3412463	rs2070600	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	AGER	rs2070600-T	0.067	4E-33	(Advanced glycosylation end product-specific receptor, soluble, AGER.4125.52.2)	0.57	[0.47-0.67] unit decrease	Affymetrix [10572788] (imputed)	N
611	chr6_qbl_hap6	3412462	3412463	rs2070600	28369058	Folkersen L	2017-04-03	PLoS Genet	Mapping of 79 loci for 83 plasma protein biomarkers in cardiovascular disease.	Blood protein levels in cardiovascular risk	3,394 European ancestry individuals	2,639 individuals	6p21.32	AGER	rs2070600-T	0.04	5E-12		0.37	unit decrease	Illumina [5270624] (imputed)	N
611	chr6_qbl_hap6	3412462	3412463	rs2070600	28166215	Hobbs BD	2017-02-06	Nat Genet	Genetic loci associated with chronic obstructive pulmonary disease overlap with loci for lung function and pulmonary fibrosis.	Chronic obstructive pulmonary disease	11,157 European ancestry cases, 36,699 European ancestry controls, 1,142 African American cases, 2,380 African American controls, 199 Korean ancestry cases, 6,741 Korean ancestry controls, 52 Hispanic cases, 548 Hispanic controls.	12,051 European ancestry cases, 11,111 European ancestry controls, 153 Korean ancestry cases, 205 Korean ancestry controls.	6p21.32	AGER	rs2070600-C	0.95	6E-10		1.24	[1.16-1.32]	Affymetrix, Illumina [NR] (imputed)	N
611	chr6_qbl_hap6	3412462	3412463	rs2070600	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FEV1/FVC)	48,943 European ancestry individuals	57,176 European ancestry individuals, 38,199 individuals.	6p21.32	AGER	rs2070600-T	0.0634	3E-25		0.14	[0.11-0.17] unit increase	Affymetrix [27624732] (imputed)	N
611	chr6_qbl_hap6	3412462	3412463	rs2070600	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	6p21.32	NR	rs2070600-?		3E-22	(AGER)	0.7091	[NR] unit decrease	Illumina [NR]	N
611	chr6_qbl_hap6	3412462	3412463	rs2070600	26030696	Cho MH	2015-06-01	Am J Respir Crit Care Med	A Genome-Wide Association Study of Emphysema and Airway Quantitative Imaging Phenotypes.	Percentage gas trapping	3,243 European ancestry chronic obstructive pulmonary disease cases, 901 African American chronic obstructive pulmonary disease cases,  3,062 European ancestry controls, 2,132 African American controls	NA	6p21.32	AGER	rs2070600-T	NR	4E-9	(All)	0.23	[0.15-0.31] unit decrease	Illumina [6900000] (imputed)	N
611	chr6_qbl_hap6	3412462	3412463	rs2070600	26030696	Cho MH	2015-06-01	Am J Respir Crit Care Med	A Genome-Wide Association Study of Emphysema and Airway Quantitative Imaging Phenotypes.	Emphysema imaging phenotypes	5,385 European ancestry chronic obstructive pulmonary disease cases, 901 African American chronic obstructive pulmonary disease cases, 3,613 European ancestry controls, 2,132 African American controls	NA	6p21.32	AGER	rs2070600-T	NR	5E-9	(%LAA-950, All)	0.14	[-0.07560-0.35560] unit decrease	Illumina [7600000] (imputed)	N
611	chr6_qbl_hap6	3412462	3412463	rs2070600	23284291	Hancock DB	2012-12-20	PLoS Genet	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (smoking interaction)	50,047 European ancestry individuals	NA	6p21.32	AGER	rs2070600-?	NR	1E-21	(FEV1/FVC, Pack-years)			NR [~ 2500000] (imputed)	N
611	chr6_qbl_hap6	3412462	3412463	rs2070600	20010835	Hancock DB	2009-12-13	Nat Genet	Meta-analyses of genome-wide association studies identify multiple loci associated with pulmonary function.	Pulmonary function	20,890 European ancestry individuals	16,178 European ancestry individuals	6p21.32	AGER, PPT2	rs2070600-T	0.04	3E-14	(FEV1/FVC)	1.0	[NR] % increase	Affymetrix, Illumina [2534500] (imputed)	N
611	chr6_qbl_hap6	3412462	3412463	rs2070600	20010834	Repapi E	2009-12-13	Nat Genet	Genome-wide association study identifies five loci associated with lung function.	Pulmonary function	20,288 European ancestry individuals	up to 54,276 European ancestry individuals	6p21.32	AGER	rs2070600-T	0.06	3E-15	(FEV1/FVC)	0.088	[0.066-0.110] s.d. increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
611	chr6_qbl_hap6	3413406	3413407	rs1800624	33766948	Zhu Z	2021-03-25	Eur Respir J	A large-scale genome-wide association analysis of lung function in the Chinese population identifies novel loci and highlights shared genetic etiology with obesity.	Lung function (FEV1/FVC)	100,285 Chinese ancestry individuals	NA	6p21.32		rs1800624-A	0.87	3E-9		0.039	unit increase	Affymetrix [NR] (imputed)	N
611	chr6_qbl_hap6	3413461	3413462	rs1800625	26876947	Saito T	2016-02-11	Biol Psychiatry	Pharmacogenomic Study of Clozapine-Induced Agranulocytosis/Granulocytopenia in a Japanese Population.	Clozapine-induced agranulocytosis/granulocytopenia in treatment-resistant schizophrenia	50 Japanese ancestry cases, 2905 Japanese ancestry controls	NA	6p21.32	ZDHHC20P2, HCG25, HCG26, LST1, MICA, FKBPL, AGPAT1, PBX2, NOTCH4, C6orf10, MHC, HLA-X, HCP5, MSH5, C6orf26	rs1800625-G	0.084	3E-9		3.78	[3.34-4.22]	Illumina [522694]	N
611	chr6_qbl_hap6	3413461	3413462	rs1800625	26546620	Xu CF	2015-11-06	Clin Cancer Res	HLA-B*57:01 Confers Susceptibility to Pazopanib-Associated Liver Injury in Patients with Cancer.	Response to Pazopanib in cancer (hepatotoxicity)	Up to 844 European ancestry cases, up to 325 Asian ancestry cases, up to 19 cases	Up to 811 European ancestry cases, up to 114 Asian ancestry cases, up to 77 cases	6p21.32	AGER	rs1800625-G	NR	8E-9	(Time to ALT>3 x upper limit of normal event)	1.8	[1.5-2.1]	Illumina [6736730] (imputed)	N
611	chr6_qbl_hap6	3414357	3414358	rs201026476	32488134	Auckland K	2020-06-02	Sci Rep	The Human Leukocyte Antigen Locus and Rheumatic Heart Disease Susceptibility in South Asians and Europeans.	Rheumatic heart disease	510 Northern Indian cases, 344 Northern Indian controls, 162 Fijian Indian cases, 147 Fijian Indian controls	150 European ancestry cases, 1,309 European ancestry controls	6p21.32	PBX2	rs201026476-?		3E-10		1.81	[1.51-2.18]	Illumina [6925553] (imputed)	N
611	chr6_qbl_hap6	3414422	3414423	rs169504	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	PBX2, XXbac-BPG300A18.13	rs169504-A	NR	4E-9		0.0216001	[0.014-0.029] unit decrease	Affymetrix [319769] (imputed)	N
611	chr6_qbl_hap6	3414422	3414423	rs169504	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	PBX2, XXbac-BPG300A18.13	rs169504-A	NR	3E-12		0.0279533	[0.02-0.036] unit increase	Affymetrix [323123] (imputed)	N
611	chr6_qbl_hap6	3414422	3414423	rs169504	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Anxiety	at least 23,606 European ancestry cases, at least 113,351 European ancestry controls	624,615 European ancestry cases, 1,310,854 European ancestry controls	6p21.32	PBX2, XXbac, BPG300A18.13	rs169504-C	0.1481	5E-28		0.03352553	[0.027-0.04] unit increase	NR [9417325] (imputed)	N
611	chr6_qbl_hap6	3414422	3414423	rs169504	29899525	Klimentidis YC	2018-06-13	Int J Obes (Lond)	Genome-wide association study of habitual physical activity in over 377,000 UK Biobank participants identifies multiple variants including CADM2 and APOE.	Moderate to vigorous physical activity levels	377,234 European ancestry individuals	NA	6p21.32	PBX2	rs169504-C	0.81	5E-11	(model 2)	0.018	unit increase	Affymetrix [11800000] (imputed)	N
611	chr6_qbl_hap6	3414422	3414423	rs169504	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p21.32	NR	rs169504-?	NR	5E-9		0.0694	[0.046-0.093] unit increase	Illumina [at least 560000] (imputed)	N
611	chr6_qbl_hap6	3415301	3415302	rs204995	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	6p21.32	NR	rs204995-A	0.736056	3E-13		0.0272612	[0.02-0.034] unit increase	Affymetrix [16577424] (imputed)	N
611	chr6_qbl_hap6	3416014	3416015	rs204994	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RACGAP1	5,360 Icelandic ancestry individuals	NA	6p21.32		rs204994-T	0.1627	4E-63		0.423554	[0.37-0.47] unit increase	Illumina [7506463] (imputed)	N
611	chr6_qbl_hap6	3416597	3416598	rs204993	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Receptor for advanced glycosylation end products levels	21,758 European ancestry individuals	9,173 individuals	6p21.32		rs204993-A	0.74	1E-48		0.1449	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
611	chr6_qbl_hap6	3416597	3416598	rs204993	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 142,336 Japanese ancestry controls	NA	6p21.32	PBX2	rs204993-?	NR	6E-9		0.0600478	[0.04-0.08] unit decrease	Illumina [19707525] (imputed)	N
611	chr6_qbl_hap6	3416597	3416598	rs204993	21804548	Hirota T	2011-07-31	Nat Genet	Genome-wide association study identifies three new susceptibility loci for adult asthma in the Japanese population.	Asthma	1,532 Japanese ancestry cases, 3,304 Japanese ancestry controls	5,639 Japanese ancestry cases, 24,608 Japanese ancestry controls	6p21.32	PBX2	rs204993-A	0.58	2E-15		1.17	[1.12-1.21]	Illumina [458847]	N
611	chr6_qbl_hap6	3418381	3418382	rs2856437	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cervical cancer	6,563 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs2856437-A	0.063203	1E-15		1.3032712	NR	Affymetrix [7846216] (imputed)	N
611	chr6_qbl_hap6	3419336	3419337	rs176095	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Atopic dermatitis	2,079 European ancestry cases, 3,867 European ancestry controls	NA	6p21.32	GPSM3	rs176095-G	NR	3E-7		1.3020833	[1.18-1.44]	Affymetrix, Illumina, Perlegen [up to 5493100] (imputed)	N
611	chr6_qbl_hap6	3419336	3419337	rs176095	23042114	Hirota T	2012-10-07	Nat Genet	Genome-wide association study identifies eight new susceptibility loci for atopic dermatitis in the Japanese population.	Atopic dermatitis	1,472 Japanese ancestry cases, 7,971 Japanese ancestry controls	1,856 Japanese ancestry cases, 7,021 Japanese ancestry controls	6p21.32	GPSM3	rs176095-T	0.81	8E-20		1.4	[1.30-1.51]	Illumina [606164]	N
611	chr6_qbl_hap6	3420973	3420974	rs3134605	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	GPSM3	rs3134605-C	NR	8E-9		0.0195758	[0.013-0.026] unit decrease	Affymetrix [319769] (imputed)	N
611	chr6_qbl_hap6	3420973	3420974	rs3134605	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	GPSM3	rs3134605-C	NR	3E-8		0.0188346	[0.012-0.025] unit decrease	Affymetrix [319769] (imputed)	N
611	chr6_qbl_hap6	3420973	3420974	rs3134605	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	GPSM3	rs3134605-C	NR	1E-8		0.0196385	[0.013-0.026] unit decrease	Affymetrix [321169] (imputed)	N
611	chr6_qbl_hap6	3420973	3420974	rs3134605	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	6p21.32	GPSM3	rs3134605-T	0.7974	7E-17		0.0033	[0.0025-0.0041] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
611	chr6_qbl_hap6	3421170	3421171	rs2269420	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Pancreatic cancer	768 White British ancestry cases, 264,559 White British ancestry controls	NA	6p21.32		rs2269420-?	NR	5E-6		550.195	[547.48-552.91]	NR [663102]	N
611	chr6_qbl_hap6	3421170	3421171	rs2269420	28031287	Sasayama D	2016-11-26	Hum Mol Genet	Genome-wide quantitative trait loci mapping of the human cerebrospinal fluid proteome.	Cerebrospinal fluid biomarker levels	133 Japanese ancestry individuals.	NA	6p21.32	NR	rs2269420-?	NR	3E-9	(Complement factor B)			Illumina [514227]	N
611	chr6_qbl_hap6	3422413	3422414	rs3132940	32534018	Liu X	2020-06-10	Brain Behav Immun	Genetic factors underlying the bidirectional relationship between autoimmune and mental disorders - findings from a Danish population-based study.	Autoimmune traits	1,383 Danish ancestry cases, 62,656 Danish ancestry controls	NA	6p21.32	NR	rs3132940-T	0.15	1E-15		0.62	[0.55-0.70]	NR [7721839] (imputed)	N
611	chr6_qbl_hap6	3422413	3422414	rs3132940	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (non-Lofgren's syndrome without extrapulmonary manifestations)	451 Swedish ancestry cases, 2,086 Swedish ancestry controls	NA	6p21.32	GPSM3, NOTCH4, AGER, MICB, NFKBIL1, LTA, NCR3, AIF1, TNXB, CREBL1, FKBPL, PRRT1	rs3132940-A	0.203	7E-6		1.531	[1.282-1.829]	Illumina [118177]	N
611	chr6_qbl_hap6	3422447	3422448	rs204990	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Scarlet fever	6,812 European ancestry cases, 113,837 European ancestry controls	NA	6p21.32	NR	rs204990-?	NR	7E-9		0.1298	[0.086-0.173] unit decrease	Illumina [at least 560000] (imputed)	N
611	chr6_qbl_hap6	3424765	3424766	rs13215567	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6p21.32	GPSM3, NOTCH4	rs13215567-A	0.049	1E-6	(IGFBP-3 )	0.03	[NR] ng/mL increase	Illumina [899892]	N
611	chr6_qbl_hap6	3426460	3426461	rs2071278	23028341	Yang X	2012-09-13	PLoS Genet	Genome-wide association study for serum complement C3 and C4 levels in healthy Chinese subjects.	Complement C3 and C4 levels	1,999 Han Chinese ancestry male individuals	1,496 Han Chinese ancestry male individuals	6p21.32	HLA-DRA	rs2071278-G	0.27	4E-72	(Serum level of C4)	0.13	[0.11-0.15] g/L decrease	Illumina [1940245] (imputed)	N
611	chr6_qbl_hap6	3427400	3427401	rs8192575	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	NOTCH4	rs8192575-G	NR	3E-14		0.0413468	[0.031-0.052] unit increase	Affymetrix [319769] (imputed)	N
611	chr6_qbl_hap6	3427400	3427401	rs8192575	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	NOTCH4	rs8192575-G	NR	1E-14		0.0418274	[0.031-0.052] unit increase	Affymetrix [319769] (imputed)	N
611	chr6_qbl_hap6	3429797	3429798	rs3134942	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.32	NOTCH4, GPSM3	rs3134942-T	0.1076459	1E-16	(EA, MHC class I polypeptide-related sequence A)	0.5791	[0.44-0.71] unit increase	Affymetrix [509946]	N
611	chr6_qbl_hap6	3431433	3431434	rs9267822	33941608	Khan A	2021-05-03	J Am Soc Nephrol	Medical Records-Based Genetic Studies of the Complement System.	Complement C4 levels	3,247 European ancestry individuals, 600 African ancestry individuals, 151 East Asian ancestry individuals	NA	6p21.32	C4	rs9267822-C	0.05	6E-7	(AA)	0.64	[0.40-0.87] unit increase	NR [NR] (imputed)	N
611	chr6_qbl_hap6	3431433	3431434	rs9267822	33941608	Khan A	2021-05-03	J Am Soc Nephrol	Medical Records-Based Genetic Studies of the Complement System.	Complement C4 levels	3,247 European ancestry individuals, 600 African ancestry individuals, 151 East Asian ancestry individuals	NA	6p21.32	C4	rs9267822-C	0.02	6E-17		0.65	[0.51-0.78] unit increase	NR [NR] (imputed)	N
611	chr6_qbl_hap6	3431433	3431434	rs9267822	33941608	Khan A	2021-05-03	J Am Soc Nephrol	Medical Records-Based Genetic Studies of the Complement System.	Complement C4 levels	3,247 European ancestry individuals, 600 African ancestry individuals, 151 East Asian ancestry individuals	NA	6p21.32	C4	rs9267822-C	0.01	7E-9	(EA)	0.61	[0.41-0.80] unit increase	NR [NR] (imputed)	N
611	chr6_qbl_hap6	3432101	3432102	rs3132935	23894747	Aberg KA	2013-02-01	JAMA Psychiatry	A comprehensive family-based replication study of schizophrenia genes.	Schizophrenia	11,185 European ancestry cases, 10,768 European ancestry controls	1,262 African American ancestry individuals, 2,740 European ancestry individuals, 2,296 Asian ancestry individuals	6p21.32	NOTCH4	rs3132935-?	0.82	5E-7	(EA)	1.25	[NR]	NR [1085772] (imputed)	N
611	chr6_qbl_hap6	3432101	3432102	rs3132935	23894747	Aberg KA	2013-02-01	JAMA Psychiatry	A comprehensive family-based replication study of schizophrenia genes.	Schizophrenia	11,185 European ancestry cases, 10,768 European ancestry controls	1,262 African American ancestry individuals, 2,740 European ancestry individuals, 2,296 Asian ancestry individuals	6p21.32	NOTCH4	rs3132935-?	0.82	3E-7		1.25	[NR]	NR [1085772] (imputed)	N
611	chr6_qbl_hap6	3432709	3432710	rs2071277	22694956	Cipriani V	2012-06-13	Hum Mol Genet	Genome-wide association study of age-related macular degeneration identifies associated variants in the TNXB-FKBPL-NOTCH4 region of chromosome 6p21.3.	Age-related macular degeneration	893 European ancestry cases, 2,199 European ancestry controls	1,411 European ancestry cases, 1,431 European ancestry controls	6p21.32	NOTCH4	rs2071277-C	0.219	2E-11		1.3	[1.20-1.41]	Illumina [2272849] (imputed)	N
611	chr6_qbl_hap6	3434019	3434020	rs3131296	19571808	Stefansson H	2009-07-01	Nature	Common variants conferring risk of schizophrenia.	Schizophrenia	2,663 European ancestry cases, 13,498 European ancestry controls	10,282 European ancestry cases, 21,093 European ancestry controls	6p21.32	MHC, NOTCH4	rs3131296-G	0.87	2E-10		1.19	[NR]	Illumina [314868]	N
611	chr6_qbl_hap6	3434264	3434265	rs9267823	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6p21.32	NOTCH4	rs9267823-C	0.252	3E-12		0.018297182	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
611	chr6_qbl_hap6	3434626	3434627	rs138753323	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.32		rs138753323-C	0.02776400000000001	7E-13		1.0961492	[1.06-1.12]	Affymetrix, Illumina [9851866] (imputed)	N
611	chr6_qbl_hap6	3435075	3435076	rs2849017	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	6p21.32	NOTCH4	rs2849017-G	0.0713240000000001	2E-10		0.027348002	[0.019-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
611	chr6_qbl_hap6	3435075	3435076	rs2849017	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	6p21.32	NOTCH4	rs2849017-G	0.071334	5E-15		0.033472747	[0.025-0.042] unit decrease	Affymetrix [93095623] (imputed)	N
611	chr6_qbl_hap6	3435984	3435985	rs3130290	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of saturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	6p21.32		rs3130290-T	0.396568	2E-14		0.0317416	[0.024-0.04] unit decrease	NR [11722792] (imputed)	N
611	chr6_qbl_hap6	3437235	3437236	rs206017	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:0_[M+H]1+/Phosphatidylethanolamine_35:0_[M+H]1+/Phosphatidate_37:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	6p21.32		rs206017-G	NR	2E-10		0.0746241	[0.052-0.098] unit decrease	Affymetrix [87696910] (imputed)	N
611	chr6_qbl_hap6	3437806	3437807	rs3132947	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Hip circumference variance	346,781 European ancestry individuals	NA	6p21.32	GPSM3	rs3132947-?	NR	5E-11				NR [5554549] (imputed)	N
611	chr6_qbl_hap6	3437806	3437807	rs3132947	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Hip circumference	346,781 European ancestry individuals	NA	6p21.32	GPSM3	rs3132947-?	NR	3E-24				NR [5554549] (imputed)	N
611	chr6_qbl_hap6	3437806	3437807	rs3132947	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Body mass index variance	346,393 European ancestry individuals	NA	6p21.32	GPSM3	rs3132947-?	NR	2E-13				NR [5554549] (imputed)	N
611	chr6_qbl_hap6	3437806	3437807	rs3132947	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Body mass index	346,393 European ancestry individuals	NA	6p21.32	GPSM3	rs3132947-?	NR	9E-15				NR [5554549] (imputed)	N
611	chr6_qbl_hap6	3440729	3440730	rs16869834	33941608	Khan A	2021-05-03	J Am Soc Nephrol	Medical Records-Based Genetic Studies of the Complement System.	Complement C4 levels	3,247 European ancestry individuals, 600 African ancestry individuals, 151 East Asian ancestry individuals	NA	6p21.32	C4	rs16869834-A	0.05	8E-20		0.44	[0.36-0.51] unit increase	NR [NR] (imputed)	N
611	chr6_qbl_hap6	3440729	3440730	rs16869834	33941608	Khan A	2021-05-03	J Am Soc Nephrol	Medical Records-Based Genetic Studies of the Complement System.	Complement C4 levels	3,247 European ancestry individuals, 600 African ancestry individuals, 151 East Asian ancestry individuals	NA	6p21.32	C4	rs16869834-A	0.05	2E-18	(EA)	0.47	[0.37-0.56] unit increase	NR [NR] (imputed)	N
611	chr6_qbl_hap6	3440729	3440730	rs16869834	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs16869834-G	0.047	5E-27	(Complement C4, C4A.C4B.4481.34.2)	0.62	[0.5-0.74] unit decrease	Affymetrix [10572788] (imputed)	N
611	chr6_qbl_hap6	3440916	3440917	rs2071286	25030430	Zignego AL	2014-07-17	Genes Immun	Genome-wide association study of hepatitis C virus- and cryoglobulin-related vasculitis.	Mixed cryoglobulinemia vasculitis in chronic hepatitis C infection	356 European ancestry cases, 447 European ancestry controls	92 European ancestry cases, 179 European ancestry controls	6p21.32	NOTCH4	rs2071286-?	0.29	2E-8		2.15	[NR]	Illumina [899641]	N
611	chr6_qbl_hap6	3441166	3441167	rs3131294	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	NOTCH4	rs3131294-A	NR	1E-10		0.025777	[0.018-0.034] unit increase	Affymetrix [321016] (imputed)	N
611	chr6_qbl_hap6	3441261	3441262	rs206019	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	NOTCH4	rs206019-T	NR	5E-13		0.0300963	[0.022-0.038] unit increase	Affymetrix [319769] (imputed)	N
611	chr6_qbl_hap6	3441261	3441262	rs206019	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	NOTCH4	rs206019-T	NR	2E-8		0.0236482	[0.015-0.032] unit increase	Affymetrix [321114] (imputed)	N
611	chr6_qbl_hap6	3441261	3441262	rs206019	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	NOTCH4	rs206019-T	NR	2E-9		0.0253993	[0.017-0.034] unit increase	Affymetrix [321169] (imputed)	N
611	chr6_qbl_hap6	3442202	3442203	rs206016	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	NOTCH4	rs206016-A	NR	2E-13		0.030587	[0.022-0.039] unit increase	Affymetrix [319769] (imputed)	N
611	chr6_qbl_hap6	3442537	3442538	rs41270472	28334935	Raffield LM	2017-05-15	Hum Mol Genet	Genome-wide association study of iron traits and relation to diabetes in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL): potential genomic intersection of iron and glucose regulation?	Iron status biomarkers (iron levels)	12,580 Hispanic/Latino individuals	NA	6p21.32	NOTCH4	rs41270472-A	NR	8E-7		0.286	[0.17-0.4] unit decrease	Illumina [27700000] (imputed)	N
611	chr6_qbl_hap6	3445365	3445366	rs404860	21804548	Hirota T	2011-07-31	Nat Genet	Genome-wide association study identifies three new susceptibility loci for adult asthma in the Japanese population.	Asthma	1,532 Japanese ancestry cases, 3,304 Japanese ancestry controls	5,639 Japanese ancestry cases, 24,608 Japanese ancestry controls	6p21.32	NOTCH4	rs404860-A	0.50	4E-23		1.21	[1.16-1.25]	Illumina [458847]	N
611	chr6_qbl_hap6	3445725	3445726	rs3134798	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C4A;C4B	5,362 Icelandic ancestry individuals	NA	6p21.32		rs3134798-G	0.3666	1E-47		0.277923	[0.24-0.32] unit increase	Illumina [7506463] (imputed)	N
611	chr6_qbl_hap6	3447265	3447266	rs438475	26503763	Song J	2015-10-27	Mol Psychiatry	Genome-wide association study identifies SESTD1 as a novel risk gene for lithium-responsive bipolar disorder.	Objective response to lithium treatment in bipolar disorder	323 European ancestry responder cases, 853 European ancestry non-responder cases	NA	6p21.32	NOTCH4	rs438475-A	0.12	2E-6		2.04	[NR]	Affymetrix, Illumina [> 8000000] (imputed)	N
611	chr6_qbl_hap6	3447892	3447893	rs2256594	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (glucocorticoids)	13,102 East Asian ancestry cases, 165,624 East Asian ancestry controls	NA	6p21.32		rs2256594-G	0.381444507	1E-9		0.081218176	[0.055-0.107] unit decrease	Illumina [13429980] (imputed)	N
611	chr6_qbl_hap6	3448657	3448658	rs8192589	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	NOTCH4	rs8192589-T	NR	7E-14		0.0321787	[0.024-0.041] unit increase	Affymetrix [323123] (imputed)	N
611	chr6_qbl_hap6	3448742	3448743	rs431722	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Joint mobility (Beighton score)	64,143 European ancestry individuals	NA	6p21.32	NOTCH4	rs431722-?	NR	2E-12		0.08	[0.102-0.058] unit decrease	Illumina [12039492] (imputed)	N
611	chr6_qbl_hap6	3448803	3448804	rs8192590	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	6p21.32	PRRC2A	rs8192590-C	0.8421	1E-8	(S1P d16:1)	0.1004	[0.066-0.135] unit increase	Illumina [~ 47000000] (imputed)	N
611	chr6_qbl_hap6	3449403	3449404	rs422951	32771030	Tangtanatakul P	2020-08-08	Arthritis Res Ther	Meta-analysis of genome-wide association study identifies FBN2 as a novel locus associated with systemic lupus erythematosus in Thai population.	Systemic lupus erythematosus	487 Thai cases, 1,606 Thai controls	405 Thai cases, 1,590 Thai controls	6p21.32	NOTCH4	rs422951-G	0.36	7E-7		1.3345	[NR]	Illumina [421909] (imputed)	N
611	chr6_qbl_hap6	3449403	3449404	rs422951	25802187	Jiang DK	2015-04-28	Hepatology	Genetic variants in five novel loci including CFB and CD40 predispose to chronic hepatitis B.	Chronic hepatitis B infection	2,514 Chinese ancestry cases, 1,130 Chinese ancestry controls	6,600 Chinese ancestry cases, 8,127 Chinese ancestry controls	6p21.32	NOTCH4	rs422951-G	0.81	5E-16		1.27	[1.20-1.35]	Illumina [3680900] (imputed)	N
611	chr6_qbl_hap6	3449660	3449661	rs520692	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling worry	372,869 European ancestry individuals	NA	6p21.32	C4A	rs520692-T	0.289258	2E-10		6.342	unit decrease	NR [10847151] (imputed)	N
611	chr6_qbl_hap6	3449843	3449844	rs8192585	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		NOTCH4	rs8192585-?	NR	3E-10	(male)	2.46406	[NR] unit decrease	Affymetrix [NR] (imputed)	N
611	chr6_qbl_hap6	3449843	3449844	rs8192585	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		NOTCH4	rs8192585-?	NR	2E-15		2.03144	[NR] unit decrease	Affymetrix [NR] (imputed)	N
611	chr6_qbl_hap6	3450052	3450053	rs415929	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.32		rs415929-T	0.711	3E-23				Affymetrix [10369434] (imputed)	N
611	chr6_qbl_hap6	3450052	3450053	rs415929	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	6p21.32	C4A	rs415929-T	0.290043	4E-8		5.51	z score decrease	NR [10847151] (imputed)	N
611	chr6_qbl_hap6	3451008	3451011	rs35565902	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6p21.32	NOTCH4	rs35565902-C	0.29421	1E-14		0.021433193	[0.016-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
611	chr6_qbl_hap6	3451008	3451011	rs35565902	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	6p21.32	NOTCH4	rs35565902-C	0.294	2E-14		0.02999182	[0.022-0.038] unit decrease	Affymetrix [~ 2500000] (imputed)	N
611	chr6_qbl_hap6	3451048	3451049	rs3132946	23583980	Fingerlin TE	2013-04-14	Nat Genet	Genome-wide association study identifies multiple susceptibility loci for pulmonary fibrosis.	Interstitial lung disease	1,161 European ancestry cases, 4,683 European ancestry controls	876 European ancestry cases, 1,890 European ancestry controls	6p21.32	NR	rs3132946-A	0.12	8E-6		1.38	[1.21-1.57]	Illumina [439828]	N
611	chr6_qbl_hap6	3451426	3451427	rs443198	21779181	Gorlova O	2011-07-14	PLoS Genet	Identification of novel genetic markers associated with clinical phenotypes of systemic sclerosis through a genome-wide association strategy.	Systemic sclerosis	2,296 European ancestry cases, 5,172 European ancestry controls	3,175 European ancestry cases, 4,210 European ancestry controls	6p21.32	NOTCH4	rs443198-?	0.63	9E-21	(ACA positive)	1.82	[1.59-2.04]	Illumina [NR] (imputed)	N
611	chr6_qbl_hap6	3451640	3451641	rs3134931	23620142	Reiner AP	2013-04-24	Hum Mol Genet	Genome-wide and gene-centric analyses of circulating myeloperoxidase levels in the charge and care consortia.	Circulating myeloperoxidase levels (serum)	9,305 European ancestry individuals		6p21.32	HLA, NOTCH4, C2	rs3134931-T	0.73	1E-8		0.05	[0.030-0.070] unit decrease	Affymetrix, Illumina [2397181]	N
611	chr6_qbl_hap6	3452061	3452062	rs434841	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	NOTCH4	rs434841-A	NR	4E-8		0.0169017	[0.011-0.023] unit decrease	Affymetrix [319769] (imputed)	N
611	chr6_qbl_hap6	3452183	3452184	rs149361718	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.32	NR	rs149361718-A	0.01394	1E-10	(KRT10)	0.7834	NR unit increase	Illumina [1671387] (imputed)	N
611	chr6_qbl_hap6	3452359	3452360	rs3830041	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	150,068 East Asian ancestry individuals	NA	6p21.32		rs3830041-T	0.185228	9E-25		0.0457917	[0.037-0.055] unit increase	Illumina [13478956] (imputed)	N
611	chr6_qbl_hap6	3452359	3452360	rs3830041	31826910	Lu Y	2019-12-11	Cancer Epidemiol Biomarkers Prev	Identification of novel loci and new risk variant in known loci for colorectal cancer risk in East Asians.	Colorectal cancer	23,572 East Asian ancestry cases, 48,700 East Asian ancestry controls	58,131 European ancestry cases, 67,347 European ancestry controls	6p21.32		rs3830041-T	0.14	4E-9	(East Asian)	1.15	[1.10-1.21]	Affymetrix, Illumina [up to 47000000] (imputed)	N
611	chr6_qbl_hap6	3452359	3452360	rs3830041	30529582	Lu Y	2018-12-06	Gastroenterology	Large-scale Genome-wide Association Study of East Asians Identifies Loci Associated With Risk for Colorectal Cancer.	Colorectal cancer	22,775 East Asian ancestry cases, 47,731 East Asian ancestry controls	NA	6p21.32	NOTCH4	rs3830041-T	0.14	2E-8		1.16	[1.10-1.21]	Affymetrix, Illumina [up to 10700000] (imputed)	N
611	chr6_qbl_hap6	3452477	3452478	rs375244	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p21.32	NOTCH4	rs375244-A	0.28	3E-6	(Turkish)	1.57	[1.30-1.90]	Illumina [up to 547389]	N
611	chr6_qbl_hap6	3452750	3452751	rs367398	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p21.32		rs367398-G	0.694	2E-11				Affymetrix [10369434] (imputed)	N
611	chr6_qbl_hap6	3453237	3453238	rs16869875	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	Systemic lupus erythematosus	1,639 East Asian ancestry cases, 2,410 East Asian ancestry controls	NA			rs16869875-T	NR	2E-16		0.4377	[0.33-0.54] unit increase	Illumina [NR] (imputed)	N
611	chr6_qbl_hap6	3453351	3453352	rs3096702	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	6p21.32	NR	rs3096702-A	0.38	1E-11		1.06	[1.04-1.07]	Illumina [20370935] (imputed)	N
611	chr6_qbl_hap6	3453351	3453352	rs3096702	23535732	Eeles RA	2013-04-01	Nat Genet	Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array.	Prostate cancer	11,085 European ancestry cases, 11,463 European ancestry controls	19,662 European ancestry cases, 19,715 European ancestry controls	6p21.32	CYP21A2, DOM3Z, FKBPL, HLA-DRB6, HCG23, LOC10029, ATF6B, LOC100293534, AGER, LOC100507547, MIR1236, PPT2, PPT2-EGF, HLA-DRA, PPT2-EGFL8, RNF5, RNF5P1, CFB, RDBP, TNXA, TNXB, HLA-DQB1, NOTCH4, SKIV2L, STK19, GPSM3, PBX2, LOC10050, EGFL8, AGPAT1, C2, C4A, PRRT1, BTNL2, C4B, HLA-DRB5, C6orf10, HLA-DRB1, CYP21A1P, HLA-DQA1	rs3096702-A	0.4	5E-9		1.07	[1.04-1.10]	Illumina [~ 2600000] (imputed)	N
611	chr6_qbl_hap6	3455618	3455619	rs17208153	33941608	Khan A	2021-05-03	J Am Soc Nephrol	Medical Records-Based Genetic Studies of the Complement System.	Complement C4 levels	3,247 European ancestry individuals, 600 African ancestry individuals, 151 East Asian ancestry individuals	NA	6p21.32	C4	rs17208153-C	0.11	2E-11		0.24	[0.18-0.30] unit increase	NR [NR] (imputed)	N
611	chr6_qbl_hap6	3455618	3455619	rs17208153	33941608	Khan A	2021-05-03	J Am Soc Nephrol	Medical Records-Based Genetic Studies of the Complement System.	Complement C4 levels	3,247 European ancestry individuals, 600 African ancestry individuals, 151 East Asian ancestry individuals	NA	6p21.32	C4	rs17208153-C	0.08	7E-11	(EA)	0.28	[0.20-0.35] unit increase	NR [NR] (imputed)	N
611	chr6_qbl_hap6	3456274	3456275	rs9267853	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p21.32	NR	rs9267853-?	NR	3E-25		0.131	[0.11-0.16] unit increase	Illumina [at least 560000] (imputed)	N
611	chr6_qbl_hap6	3458242	3458243	rs3132948	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Bronchiectasis	2,888 European ancestry cases, 440,263 European ancestry controls, 241 East Asian ancestry cases, 161,803 East Asian ancestry controls	NA	6p21.32		rs3132948-G	NR	7E-9		0.1526	[0.1-0.2] unit decrease	Affymetrix, Illumina [25839694] (imputed)	N
611	chr6_qbl_hap6	3460164	3460165	rs377763	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Prostate cancer	7,438 White British ancestry cases, 118,206 White British ancestry controls	NA	6p21.32		rs377763-?	NR	9E-6		0.908716	[0.87-0.95]	NR [680312]	N
611	chr6_qbl_hap6	3460164	3460165	rs377763	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling nervous	373,121 European ancestry individuals	NA	6p21.32	NR	rs377763-A	0.216145	1E-10		6.43	z score decrease	NR [10847151] (imputed)	N
611	chr6_qbl_hap6	3462267	3462268	rs6941515	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on myeloid Dendritic Cell	2,872 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs6941515-T	0.5683199999999999	8E-12		0.2226	[0.16-0.29] unit decrease	Illumina [17926605] (imputed)	N
611	chr6_qbl_hap6	3462542	3462543	rs3096692	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	NOTCH4	rs3096692-G	NR	3E-12		0.0293978	[0.021-0.038] unit decrease	Affymetrix [323858] (imputed)	N
611	chr6_qbl_hap6	3462542	3462543	rs3096692	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	NOTCH4	rs3096692-G	NR	2E-10		0.0269591	[0.019-0.035] unit decrease	Affymetrix [127266] (imputed)	N
611	chr6_qbl_hap6	3462605	3462606	rs443863	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.32	NR	rs443863-?	NR	6E-9				Affymetrix [~ 8270000] (imputed)	N
611	chr6_qbl_hap6	3465821	3465822	rs9279532	31577861	Dai J	2019-10-31	Int J Cancer	Genome-wide association study of INDELs identified four novel susceptibility loci associated with lung cancer risk.	Lung cancer	20,871 European ancestry cases, 15,971 European ancestry controls, 2,331 Chinese ancestry cases, 3,077 Chinese ancestry controls	NA	6p21.32	NOTCH4	rs9279532-D	0.12	3E-7		1.11	[1.07-0.94]	Illumina [484196]	N
611	chr6_qbl_hap6	3465883	3465884	rs28732180	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p21.32	NR	rs28732180-?	NR	1E-15		0.1765	[0.13-0.22] unit increase	Illumina [at least 560000] (imputed)	N
611	chr6_qbl_hap6	3466046	3466047	rs549182	24837172	Juyal G	2014-05-16	Gut	Genome-wide association scan in north Indians reveals three novel HLA-independent risk loci for ulcerative colitis.	Ulcerative colitis	603 North Indian ancestry cases, 622 North Indian ancestry controls	733 North Indian ancestry cases, 1,148 North Indian ancestry controls	6p21.32	NOTCH4	rs549182-A	0.11	8E-10		1.59	[1.37-1.85]	Illumina [480391]	N
611	chr6_qbl_hap6	3466111	3466112	rs9267911	23266558	Yamazaki K	2012-12-21	Gastroenterology	A genome-wide association study identifies 2 susceptibility Loci for Crohn's disease in a Japanese population.	Crohn's disease	372 Japanese ancestry cases,3,389 Japanese ancestry controls	Up to 1,151 Japanese ancestry cases, up to 15,800 Japanese ancestry controls	6p21.32	PBX2, NOTCH4	rs9267911-T	0.479	3E-7		1.5	[1.29-1.76]	Illumina [4929034] (imputed)	N
611	chr6_qbl_hap6	3467489	3467490	rs3134938	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p21.32	NOTCH4	rs3134938-C	0.832	8E-7		0.076	[0.047-0.105] unit decrease	Affymetrix, Illumina [7374092] (imputed)	N
611	chr6_qbl_hap6	3467540	3467541	rs3134937	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	NOTCH4	rs3134937-T	NR	7E-9		0.0212317	[0.014-0.028] unit decrease	Affymetrix [323858] (imputed)	N
611	chr6_qbl_hap6	3468182	3468183	rs3130304	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	NOTCH4	rs3130304-A	NR	4E-8		0.0203511	[0.013-0.028] unit increase	Affymetrix [323123] (imputed)	N
611	chr6_qbl_hap6	3468394	3468395	rs416352	30294719	Zeng Y	2018-08-24	JAMA Netw Open	Sex Differences in Genetic Associations With Longevity.	Longevity	564 Han Chinese ancestry male centenarian cases, 1,614 Han Chinese ancestry female centenarian cases, 773 Han Chinese ancestry male middle-aged controls, 1,526 Han Chinese ancestry female middle-aged controls	NA	6p21.32	NOTCH4	rs416352-?	0.51	8E-6	(female)	1.261	[1.14-1.40]	Illumina [5595657] (imputed)	N
611	chr6_qbl_hap6	3469329	3469330	rs424232	23936387	Ostensson M	2013-08-02	PLoS One	A possible mechanism behind autoimmune disorders discovered by genome-wide linkage and association analysis in celiac disease.	Celiac disease	206 European ancestry trios	NA	6p21.32	HLA	rs424232-C		5E-21				Illumina [944512] (imputed)	N
611	chr6_qbl_hap6	3470249	3470250	rs186298790	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	6p21.32	NR	rs186298790-?	NR	4E-11	(MIC-A)	3.61094	[2.54-4.68] unit increase	Illumina [11901634] (imputed)	N
611	chr6_qbl_hap6	3470330	3470331	rs570559246	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Treatment or medication use - sulfasalazine (UKB data field 20003_1140909702)	866 European ancestry cases, 455,410 European ancestry controls	NA	6p21.32		rs570559246-C	0.003586	7E-10		3.33	[2.27-4.39] unit increase	NR [11842647] (imputed)	N
611	chr6_qbl_hap6	3470455	3470456	rs380911	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.32	Intergenic	rs380911-?		9E-6		1.04	[1.02-1.06]	Illumina [7645193] (imputed)	N
611	chr6_qbl_hap6	3470455	3470456	rs380911	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.32	Intergenic	rs380911-?		3E-6		1.51	[1.27-1.80]	Illumina [7645193] (imputed)	N
611	chr6_qbl_hap6	3470776	3470778	rs28993469	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	6p21.32		rs28993469-C	0.261024	4E-12		0.019322034	[0.014-0.025] unit increase	Affymetrix [93095623] (imputed)	N
611	chr6_qbl_hap6	3470865	3470866	rs507778	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	6p21.32	intergenic	rs507778-T	0.3256	1E-24		0.03915988	[0.032-0.047] unit decrease	Affymetrix [~ 2500000] (imputed)	N
611	chr6_qbl_hap6	3470865	3470866	rs507778	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	6p21.32	intergenic	rs507778-T	0.3257	2E-29		0.04307319	[0.036-0.051] unit decrease	Affymetrix [~ 2500000] (imputed)	N
611	chr6_qbl_hap6	3471359	3471360	rs28732181	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Strep throat	52,487 European ancestry cases, 22,017 European ancestry controls	NA	6p21.32	NR	rs28732181-?	NR	6E-6		0.0381	[0.022-0.055] unit decrease	Illumina [at least 560000] (imputed)	N
611	chr6_qbl_hap6	3471807	3471808	rs419132	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	Triglycerides	up to 62,166 European ancestry individuals	NA	6p21.32	HLA-area	rs419132-G	0.2	5E-12		0.056	[0.04-0.072] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
611	chr6_qbl_hap6	3472093	3472094	rs412657	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6p21.32		rs412657-G	0.377896	3E-19		0.021442138	[0.017-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
611	chr6_qbl_hap6	3472325	3472326	rs411326	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	6p21.32		rs411326-C	0.728	4E-13				Affymetrix [10369434] (imputed)	N
611	chr6_qbl_hap6	3473666	3473667	rs9267951	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.32		rs9267951-C	0.729	9E-29				Affymetrix [10369434] (imputed)	N
611	chr6_qbl_hap6	3473666	3473667	rs9267951	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p21.32		rs9267951-C	0.729	5E-17				Affymetrix [10369434] (imputed)	N
611	chr6_qbl_hap6	3473705	3473706	rs9267952	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.32		rs9267952-G	0.573	6E-23				Affymetrix [10369434] (imputed)	N
611	chr6_qbl_hap6	3473705	3473706	rs9267952	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	XXbac-BPG154L12.4	rs9267952-A	NR	5E-14		0.0214967	[0.016-0.027] unit increase	Affymetrix [319769] (imputed)	N
611	chr6_qbl_hap6	3473705	3473706	rs9267952	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	XXbac-BPG154L12.4	rs9267952-A	NR	2E-13		0.0209537	[0.015-0.027] unit increase	Affymetrix [319769] (imputed)	N
611	chr6_qbl_hap6	3473705	3473706	rs9267952	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	XXbac-BPG154L12.4	rs9267952-A	NR	5E-12		0.0199663	[0.014-0.026] unit increase	Affymetrix [321169] (imputed)	N
611	chr6_qbl_hap6	3473717	3473717	rs35161164	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	XXbac-BPG154L12.4	rs35161164-CG	NR	1E-11		0.0195502	[0.014-0.025] unit decrease	Affymetrix [321016] (imputed)	N
611	chr6_qbl_hap6	3473717	3473717	rs35161164	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	XXbac-BPG154L12.4	rs35161164-CG	NR	5E-15		0.0245369	[0.018-0.031] unit decrease	Affymetrix [323123] (imputed)	N
611	chr6_qbl_hap6	3473868	3473869	rs10456404	33119750	Vergara C	2020-10-29	J Infect Dis	A multi-ancestry sex stratified genome-wide association study of spontaneous clearance of hepatitis C virus.	Hepatitis C (spontaneous viral clearance)	239 African ancestry male cases, 1,184 African ancestry male controls, 206 African ancestry female cases, 572 African ancestry female controls, 489 European ancestry male cases, 703 European ancestry male controls, 212 European ancestry female cases, 332 European ancestry female controls, 91 Hispanic male cases, 197 Hispanic male controls, 82 Hispanic female cases, 116 Hispanic female controls	NA	6p21.32	NR	rs10456404-C	0.13	2E-7	(female)	1.89	[NR]	Illumina [5730693] (imputed)	N
611	chr6_qbl_hap6	3474063	3474064	rs9267954	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	XXbac-BPG154L12.4	rs9267954-T	NR	2E-12		0.022421	[0.016-0.029] unit increase	Affymetrix [319769] (imputed)	N
611	chr6_qbl_hap6	3474063	3474064	rs9267954	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	XXbac-BPG154L12.4	rs9267954-T	NR	3E-12		0.0221835	[0.016-0.028] unit increase	Affymetrix [319769] (imputed)	N
611	chr6_qbl_hap6	3474063	3474064	rs9267954	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	XXbac-BPG154L12.4	rs9267954-T	NR	2E-11		0.0234019	[0.017-0.03] unit decrease	Affymetrix [323123] (imputed)	N
611	chr6_qbl_hap6	3474063	3474064	rs9267954	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	XXbac-BPG154L12.4	rs9267954-T	NR	1E-11		0.0218043	[0.015-0.028] unit increase	Affymetrix [321169] (imputed)	N
611	chr6_qbl_hap6	3474224	3474225	rs454748	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	XXbac-BPG154L12.4	rs454748-A	NR	3E-11		0.0188397	[0.013-0.024] unit decrease	Affymetrix [321016] (imputed)	N
611	chr6_qbl_hap6	3474224	3474225	rs454748	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	XXbac-BPG154L12.4	rs454748-A	NR	5E-15		0.0242475	[0.018-0.03] unit decrease	Affymetrix [323123] (imputed)	N
611	chr6_qbl_hap6	3478107	3478108	rs6936204	25096241	Keller MF	2014-08-05	Hum Mol Genet	Trans-ethnic meta-analysis of white blood cell phenotypes.	Neutrophil count	9,802 Japanese ancestry individuals, 16,550 European ancestry individuals, 7,391 African American individuals	NA	6p21.32	AK123889	rs6936204-C	0.585	6E-6	(EA)	0.02	[0.012-0.028] unit increase	Illumina [NR] (imputed)	N
611	chr6_qbl_hap6	3478107	3478108	rs6936204	25096241	Keller MF	2014-08-05	Hum Mol Genet	Trans-ethnic meta-analysis of white blood cell phenotypes.	Neutrophil count	9,802 Japanese ancestry individuals, 16,550 European ancestry individuals, 7,391 African American individuals	NA	6p21.32	AK123889	rs6936204-?	NR	3E-8		0.0196	[0.013-0.026] unit decrease	Illumina [NR] (imputed)	N
611	chr6_qbl_hap6	3478247	3478248	rs9267972	24925725	Chung SA	2014-06-12	J Am Soc Nephrol	Lupus nephritis susceptibility loci in women with systemic lupus erythematosus.	Lupus nephritis in systemic lupus erythematosus	588 European ancestry cases, 1,412 European ancestry controls	NA	6p21.32	C6orf10, NOTCh4	rs9267972-A	NR	2E-6	(Dominant)	1.85	[1.46,2.33]	Affymetrix, Illumina [1621689] (imputed)	N
611	chr6_qbl_hap6	3478428	3478429	rs3115574	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p21.32	NR	rs3115574-?	NR	2E-13		0.0942	[0.069-0.119] unit increase	Illumina [at least 560000] (imputed)	N
611	chr6_qbl_hap6	3478861	3478862	rs2894240	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	XXbac-BPG154L12.4	rs2894240-A	NR	5E-12		0.0197637	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
611	chr6_qbl_hap6	3478861	3478862	rs2894240	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	XXbac-BPG154L12.4	rs2894240-A	NR	2E-11		0.0191638	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
611	chr6_qbl_hap6	3478861	3478862	rs2894240	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	XXbac-BPG154L12.4	rs2894240-A	NR	4E-11		0.0191969	[0.014-0.025] unit increase	Affymetrix [321169] (imputed)	N
611	chr6_qbl_hap6	3479858	3479859	rs3115573	20595679	Feehally J	2010-07-01	J Am Soc Nephrol	HLA has strongest association with IgA nephropathy in genome-wide analysis.	Nephropathy	187 European ancestry child cases, 244 European ancestry cases, 4,980 European ancestry controls	NA	6p21.32	intergenic	rs3115573-?	NR	1E-9		1.62	[1.39-1.90]	Illumina [286200]	N
611	chr6_qbl_hap6	3480004	3480005	rs9296015	21779181	Gorlova O	2011-07-14	PLoS Genet	Identification of novel genetic markers associated with clinical phenotypes of systemic sclerosis through a genome-wide association strategy.	Systemic sclerosis	2,296 European ancestry cases, 5,172 European ancestry controls	3,175 European ancestry cases, 4,210 European ancestry controls	6p21.32	NOTCH4	rs9296015-?	0.81	1E-8	(ATA positive)	1.85	[1.49-2.27]	Illumina [NR] (imputed)	N
611	chr6_qbl_hap6	3480004	3480005	rs9296015	21505073	Terao C	2011-04-19	Hum Mol Genet	The human AIRE gene at chromosome 21q22 is a genetic determinant for the predisposition to rheumatoid arthritis in Japanese population.	Rheumatoid arthritis	1,247 Japanese ancestry cases, 1,486 Japanese ancestry controls	4,168 Japanese ancestry cases, 5,003 Japanese ancestry controls	6p21.32	HLA locus	rs9296015-?	NR	2E-38				Illumina [241523]	N
611	chr6_qbl_hap6	3482710	3482711	rs9267995	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	XXbac-BPG154L12.4	rs9267995-G	NR	2E-9		0.0171285	[0.012-0.023] unit decrease	Affymetrix [321114] (imputed)	N
611	chr6_qbl_hap6	3482710	3482711	rs9267995	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	XXbac-BPG154L12.4	rs9267995-G	NR	1E-21		0.027192	[0.022-0.033] unit decrease	Affymetrix [321169] (imputed)	N
611	chr6_qbl_hap6	3482710	3482711	rs9267995	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	6p21.32	NR	rs9267995-A	0.548939	3E-14		0.0512585	[0.038-0.065] unit decrease	Affymetrix [17914406] (imputed)	N
611	chr6_qbl_hap6	3482726	3482727	rs9296018	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.32		rs9296018-A	0.81	6E-10				Affymetrix [10369434] (imputed)	N
611	chr6_qbl_hap6	3483702	3483703	rs139197261	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6p21.32	XXbac-BPG154L12.4	rs139197261-G	0.015037	2E-10		0.05895812	[0.041-0.077] unit decrease	Affymetrix [93095623] (imputed)	N
611	chr6_qbl_hap6	3484444	3484445	rs3130320	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	XXbac-BPG154L12.4	rs3130320-T	NR	2E-25		0.030089	[0.024-0.036] unit decrease	Affymetrix [319769] (imputed)	N
611	chr6_qbl_hap6	3484444	3484445	rs3130320	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	XXbac-BPG154L12.4	rs3130320-T	NR	1E-15		0.0257005	[0.019-0.032] unit decrease	Affymetrix [323858] (imputed)	N
611	chr6_qbl_hap6	3484444	3484445	rs3130320	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	XXbac-BPG154L12.4	rs3130320-T	NR	5E-24		0.0292129	[0.024-0.035] unit decrease	Affymetrix [319769] (imputed)	N
611	chr6_qbl_hap6	3484444	3484445	rs3130320	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	XXbac-BPG154L12.4	rs3130320-T	NR	6E-14		0.0240661	[0.018-0.03] unit decrease	Affymetrix [127266] (imputed)	N
611	chr6_qbl_hap6	3484444	3484445	rs3130320	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	XXbac-BPG154L12.4	rs3130320-T	NR	7E-18		0.0248771	[0.019-0.031] unit increase	Affymetrix [321016] (imputed)	N
611	chr6_qbl_hap6	3484444	3484445	rs3130320	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	XXbac-BPG154L12.4	rs3130320-T	NR	3E-23		0.0312285	[0.025-0.037] unit increase	Affymetrix [323123] (imputed)	N
611	chr6_qbl_hap6	3484444	3484445	rs3130320	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.32	NOTCH4, C6orf10	rs3130320-C	0.6281	7E-8	(EA)	0.0224	[0.014-0.03] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
611	chr6_qbl_hap6	3484444	3484445	rs3130320	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.32	BTNL2	rs3130320-C	0.6281	6E-6	(EA, men)	0.0276	[0.016-0.04] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
611	chr6_qbl_hap6	3484444	3484445	rs3130320	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6p21.32	BTNL2	rs3130320-C	0.6281	6E-9	(EA)	0.0271	[0.018-0.036] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
611	chr6_qbl_hap6	3484444	3484445	rs3130320	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6p21.32	BTNL2	rs3130320-C	0.6267	9E-6	(EA, men)	0.0304	[0.017-0.044] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
611	chr6_qbl_hap6	3484444	3484445	rs3130320	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.32	NOTCH4, C6orf10	rs3130320-?	0.6281	5E-8	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
611	chr6_qbl_hap6	3484444	3484445	rs3130320	21408207	Chung SA	2011-03-03	PLoS Genet	Differential genetic associations for systemic lupus erythematosus based on anti-dsDNA autoantibody production.	Systemic lupus erythematosus	811 anti-dsDNA positive European ancestry cases, 906 anti-dsDNA negative European ancestry cases, 4,813 European ancestry controls	NA	6p21.32	NOTCH4, C6orf10	rs3130320-T	0.39	3E-6	(case-only)	1.39	[1.21-1.60]	Illumina [421318] (imputed)	N
611	chr6_qbl_hap6	3487536	3487537	rs112845108	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	XXbac-BPG154L12.4	rs112845108-T	NR	3E-8		0.0203101	[0.013-0.027] unit increase	Affymetrix [323123] (imputed)	N
611	chr6_qbl_hap6	3487665	3487666	rs9268026	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IGF2R	5,361 Icelandic ancestry individuals	NA	6p21.32		rs9268026-G	0.07788	3E-13		0.252335	[0.18-0.32] unit increase	Illumina [7506463] (imputed)	N
611	chr6_qbl_hap6	3490423	3490424	rs3132969	29534301	Nishida N	2018-03-13	Hepatology	Key HLA-DRB1-DQB1 haplotypes and role of the BTNL2 gene for response to a hepatitis B vaccine.	Response to hepatitis B vaccine	107 Japanese ancestry low responder individuals, 351 Japanese ancestry intermediate responder individuals, 735 Japanese ancestry high responder individuals	NA	6p21.32	OXA1L	rs3132969-?		2E-6		0.147	unit decrease	Affymetrix [427664]	N
611	chr6_qbl_hap6	3491539	3491540	rs3132972	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Perceived unattractiveness to mosquitoes	16,576 European ancestry individuals	NA	6p21.32	intergenic	rs3132972-G	NR	2E-6		0.114743	[0.067-0.162] unit decrease	Illumina [7433384] (imputed)	N
611	chr6_qbl_hap6	3491539	3491540	rs3132972	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.32	Intergenic	rs3132972-G	NR	8E-9		0.0190698	[0.013-0.026] unit decrease	Illumina [13520550] (imputed)	N
611	chr6_qbl_hap6	3493836	3493837	rs9268072	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Hepatitis B	1,425 European ancestry cases, 218,180 European ancestry controls	NA	6p21.32	NR	rs9268072-?	NR	1E-6		0.2518	[0.15-0.36] unit increase	Illumina [at least 560000] (imputed)	N
611	chr6_qbl_hap6	3505824	3505825	rs3130340	18445777	Styrkarsdottir U	2008-04-29	N Engl J Med	Multiple genetic loci for bone mineral density and fractures.	Bone mineral density (spine)	5,861 European ancestry individuals	7,925 European ancestry individuals	6p21.32	MHC, C6orf10	rs3130340-T	0.79	1E-7		0.1	[0.06-0.13] s.d. decrease	Illumina [301019]	N
611	chr6_qbl_hap6	3508243	3508244	rs145568234	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Ulcerative colitis	5,371 European ancestry cases, 412,561 European ancestry controls, 314 East Asian ancestry cases, 178,375 East Asian ancestry controls	NA	6p21.32		rs145568234-G	NR	5E-35		1.1793	[0.99-1.37] unit increase	Affymetrix, Illumina [25840981] (imputed)	N
611	chr6_qbl_hap6	3515477	3515477	rs9281714	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs9281714-T	0.974	2E-6		1.419	[1.28-1.56]	Illumina [11270530] (imputed)	N
611	chr6_qbl_hap6	3516730	3516731	rs184614409	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	6p21.32	NR	rs184614409-?	NR	8E-10		6.14	NR z score decrease	Illumina [at least 830937] (imputed)	N
611	chr6_qbl_hap6	3518784	3518785	rs926070	24292274	Speedy HE	2013-12-01	Nat Genet	A genome-wide association study identifies multiple susceptibility loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	1,739 European ancestry cases, 5,199 European ancestry controls	1,144 European ancestry cases, 3,151 European ancestry controls	6p21.32	HLA	rs926070-A	0.66	4E-8		1.27	[NR]	Illumina [450000] (imputed)	N
611	chr6_qbl_hap6	3527093	3527094	rs114355928	32534018	Liu X	2020-06-10	Brain Behav Immun	Genetic factors underlying the bidirectional relationship between autoimmune and mental disorders - findings from a Danish population-based study.	Autoimmune traits	1,383 Danish ancestry cases, 62,656 Danish ancestry controls	NA	6p21.32	NR	rs114355928-T	0.018	2E-8		2.02	[1.62-2.53]	NR [7721839] (imputed)	N
611	chr6_qbl_hap6	3527522	3527523	rs9268155	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	6p21.32	NR	rs9268155-?	NR	1E-10		0.073	[0.051-0.095] unit decrease	Illumina [at least 560000] (imputed)	N
611	chr6_qbl_hap6	3533354	3533355	rs56036302	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Sjogren's syndrome	303 East Asian ancestry cases, 175,599 East Asian ancestry controls	NA	6p21.32		rs56036302-T	0.200590293	6E-10		0.6675887	[0.46-0.88] unit increase	Illumina [13429612] (imputed)	N
611	chr6_qbl_hap6	3533354	3533355	rs56036302	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Autoimmune hepatitis	85 East Asian ancestry cases, 166,529 East Asian ancestry controls	NA	6p21.32		rs56036302-T	0.200204228	7E-9		1.2431419	[0.82-1.66] unit increase	Illumina [13427809] (imputed)	N
611	chr6_qbl_hap6	3537472	3537473	rs28366178	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	6p21.32	C6orf10	rs28366178-T	NR	9E-8		0.0353278	[0.022-0.048] unit increase	Illumina [13519193] (imputed)	N
612	chr6_qbl_hap6	3539831	3539832	rs9268199	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	C6orf10	rs9268199-G	NR	2E-8		0.0203912	[0.013-0.028] unit decrease	Affymetrix [319769] (imputed)	N
612	chr6_qbl_hap6	3539831	3539832	rs9268199	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs9268199-G	NR	3E-8		0.0201935	[0.013-0.027] unit decrease	Affymetrix [319769] (imputed)	N
612	chr6_qbl_hap6	3539831	3539832	rs9268199	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs9268199-G	NR	2E-8		0.0207992	[0.014-0.028] unit decrease	Affymetrix [321169] (imputed)	N
612	chr6_qbl_hap6	3539831	3539832	rs9268199	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.32	C6orf10	rs9268199-G	NR	2E-8	(women)	0.0327867	[0.021-0.044] unit increase	Illumina [13520550] (imputed)	N
612	chr6_qbl_hap6	3539988	3539989	rs3864302	34116867	Tanaka N	2021-06-02	J Allergy Clin Immunol	Eight novel susceptibility loci and putative causal variants in atopic dermatitis.	Atopic dermatitis	2,597 Japanese ancestry cases, 110,504 Japanese ancestry controls	NA	6p21.32		rs3864302-?	NR	6E-17		0.77	[0.72-0.82]	Illumina [9900441] (imputed)	N
612	chr6_qbl_hap6	3540536	3540537	rs9268202	29534301	Nishida N	2018-03-13	Hepatology	Key HLA-DRB1-DQB1 haplotypes and role of the BTNL2 gene for response to a hepatitis B vaccine.	Response to hepatitis B vaccine	107 Japanese ancestry low responder individuals, 351 Japanese ancestry intermediate responder individuals, 735 Japanese ancestry high responder individuals	NA	6p21.32	C6orf10	rs9268202-?		8E-8		0.168	unit decrease	Affymetrix [427664]	N
612	chr6_qbl_hap6	3540818	3540819	rs6934429	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	C6orf10	rs6934429-T	NR	9E-14		0.0248579	[0.018-0.031] unit decrease	Affymetrix [319769] (imputed)	N
612	chr6_qbl_hap6	3540818	3540819	rs6934429	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs6934429-T	NR	7E-13		0.0239747	[0.017-0.031] unit decrease	Affymetrix [319769] (imputed)	N
612	chr6_qbl_hap6	3542212	3542213	rs74209703	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.32	NR	rs74209703-?	NR	5E-10				Affymetrix [~ 8270000] (imputed)	N
612	chr6_qbl_hap6	3542608	3542609	rs28366179	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	6p21.32	C6orf10	rs28366179-A	0.1646	3E-21		0.04564547	[0.036-0.055] unit increase	Affymetrix [~ 2500000] (imputed)	N
612	chr6_qbl_hap6	3543264	3543265	rs2395141	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs2395141-?	NR	3E-10				Affymetrix [~ 8270000] (imputed)	N
612	chr6_qbl_hap6	3544050	3544051	rs6910071	20453842	Stahl EA	2010-05-09	Nat Genet	Genome-wide association study meta-analysis identifies seven new rheumatoid arthritis risk loci.	Rheumatoid arthritis	5,539 European ancestry cases, 20,169 European ancestry controls	6,768 European ancestry cases, 8,806 European ancestry controls	6p21.32	HLA-DRB1	rs6910071-G	0.22	1E-299		2.88	[2.73-3.03]	Affymetrix, Illumina [~ 2716259] (imputed)	N
612	chr6_qbl_hap6	3554778	3554779	rs2395143	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	C6orf10, HNRNPA1P2	rs2395143-G	NR	2E-10		0.0215226	[0.015-0.028] unit decrease	Affymetrix [323123] (imputed)	N
612	chr6_qbl_hap6	3556629	3556632	rs759777208	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	C6orf10	rs759777208-CT	NR	3E-12		0.0275667	[0.02-0.035] unit decrease	Affymetrix [323858] (imputed)	N
612	chr6_qbl_hap6	3556629	3556632	rs759777208	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	C6orf10	rs759777208-CT	NR	2E-11		0.0265095	[0.019-0.034] unit decrease	Affymetrix [127266] (imputed)	N
612	chr6_qbl_hap6	3556629	3556632	rs759777208	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	C6orf10	rs759777208-CT	NR	4E-8		0.0212618	[0.014-0.029] unit increase	Affymetrix [323123] (imputed)	N
612	chr6_qbl_hap6	3556629	3556632	rs759777208	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p21.32	C6orf10	rs759777208-CT	NR	2E-8		0.0218536	[0.014-0.03] unit decrease	Affymetrix [323858] (imputed)	N
612	chr6_qbl_hap6	3556945	3556946	rs9268249	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	C6orf10	rs9268249-A	NR	5E-8		0.015398	[0.0099-0.0209] unit decrease	Affymetrix [321016] (imputed)	N
612	chr6_qbl_hap6	3556945	3556946	rs9268249	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	C6orf10	rs9268249-A	NR	7E-15		0.0239145	[0.018-0.03] unit decrease	Affymetrix [323123] (imputed)	N
612	chr6_qbl_hap6	3557079	3557080	rs9268251	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	C6orf10	rs9268251-A	NR	7E-11		0.0216525	[0.015-0.028] unit decrease	Affymetrix [319769] (imputed)	N
612	chr6_qbl_hap6	3557079	3557080	rs9268251	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs9268251-A	NR	3E-10		0.0208763	[0.014-0.027] unit decrease	Affymetrix [319769] (imputed)	N
612	chr6_qbl_hap6	3557079	3557080	rs9268251	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs9268251-A	NR	5E-10		0.0208582	[0.014-0.027] unit decrease	Affymetrix [321169] (imputed)	N
612	chr6_qbl_hap6	3560661	3560662	rs145396511	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs145396511-T	0.989	5E-9	(conditional)	1.574	[1.42-1.72]	Illumina [11270530] (imputed)	N
612	chr6_qbl_hap6	3562012	3562013	rs3129960	33106546	Johnson TA	2020-10-26	J Hum Genet	Association of an IGHV3-66 gene variant with Kawasaki disease.	Kawasaki disease	1,276 East Asian ancestry cases, 5,086 East Asian ancestry controls	2,152 East Asian ancestry cases, 2,751 East Asian ancestry controls	6p21.32	C6orf10, LOC101929163	rs3129960-G	NR	7E-13		0.73	[0.67-0.80]	Affymetrix, Illumina [6265045] (imputed)	N
612	chr6_qbl_hap6	3562630	3562631	rs115378818	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.32	C6orf10	rs115378818-T	0.0143760000000001	3E-49		0.16935384	[0.15-0.19] unit decrease	Affymetrix [93095623] (imputed)	N
612	chr6_qbl_hap6	3563585	3563586	rs1265757	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p21.32	C6orf10	rs1265757-A	0.343	1E-33				Illumina [118177]	N
612	chr6_qbl_hap6	3566441	3566442	rs78546106	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs78546106-?	NR	6E-11				Affymetrix [~ 8270000] (imputed)	N
612	chr6_qbl_hap6	3566861	3566862	rs926592	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p21.32	TSBP1	rs926592-C	0.658	6E-6		0.059	[0.034-0.084] unit increase	Affymetrix, Illumina [7374092] (imputed)	N
612	chr6_qbl_hap6	3567182	3567183	rs3129900	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (multivariate analysis)	477,968 European ancestry individuals	NA	6p21.32	C6orf10	rs3129900-G	0.171	7E-17		0.05	[0.038-0.062] unit decrease	NR [NR] (imputed)	N
612	chr6_qbl_hap6	3567182	3567183	rs3129900	20639878	Singer JB	2010-07-18	Nat Genet	A genome-wide study identifies HLA alleles associated with lumiracoxib-related liver injury.	Lumiracoxib-related liver injury	31 European ancestry cases, 3 Hispanic cases, 1 case, 176 European, Hispanic and other ancestry controls	79 European ancestry cases, 16 Hispanic ancestry cases, 1 case, 405 European, Hispanic and other ancestry controls	6p21.32	HLA-DRB1	rs3129900-?	0.105	7E-25		7.5	[5.0-11.3]	Affymetrix [682386]	N
612	chr6_qbl_hap6	3567293	3567294	rs9368716	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	C6orf10	rs9368716-A	NR	4E-17		0.0234977	[0.018-0.029] unit increase	Affymetrix [319769] (imputed)	N
612	chr6_qbl_hap6	3567293	3567294	rs9368716	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs9368716-A	NR	1E-16		0.0231755	[0.018-0.029] unit increase	Affymetrix [319769] (imputed)	N
612	chr6_qbl_hap6	3567293	3567294	rs9368716	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs9368716-A	NR	4E-9		0.0166452	[0.011-0.022] unit increase	Affymetrix [321114] (imputed)	N
612	chr6_qbl_hap6	3567293	3567294	rs9368716	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs9368716-A	NR	4E-17		0.023828	[0.018-0.029] unit increase	Affymetrix [321169] (imputed)	N
612	chr6_qbl_hap6	3570113	3570114	rs9469099	23042114	Hirota T	2012-10-07	Nat Genet	Genome-wide association study identifies eight new susceptibility loci for atopic dermatitis in the Japanese population.	Atopic dermatitis	1,472 Japanese ancestry cases, 7,971 Japanese ancestry controls	1,856 Japanese ancestry cases, 7,021 Japanese ancestry controls	6p21.32	C6orf10	rs9469099-G	0.909	5E-19		1.61	[1.44-1.80]	Illumina [606164]	N
612	chr6_qbl_hap6	3572069	3572070	rs2849018	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Diastolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	6p21.32	C6orf10	rs2849018-C	0.6531	2E-17		0.3443	[0.26-0.42] mmHg increase	Affymetrix [NR] (imputed)	N
612	chr6_qbl_hap6	3572665	3572666	rs3132954	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.32	NR	rs3132954-?	NR	3E-11				Affymetrix [~ 8270000] (imputed)	N
612	chr6_qbl_hap6	3576116	3576117	rs78461719	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	6p21.32	NR	rs78461719-T	0.03388599999999997	1E-8		0.0314455	[0.022-0.041] unit increase	Affymetrix [16578495] (imputed)	N
612	chr6_qbl_hap6	3576590	3576591	rs910049	23321320	Urabe Y	2013-01-12	J Hepatol	A genome-wide association study of HCV-induced liver cirrhosis in the Japanese population identifies novel susceptibility loci at the MHC region.	Hepatitis C induced liver cirrhosis	682 Japanese ancestry cases, 1,045 Japanese ancestry controls	936 Japanese ancestry cases, 3,809 Japanese ancestry controls	6p21.32	C6orf10	rs910049-A	0.142	9E-11		1.46	[1.28-1.62]	Illumina [431618]	N
612	chr6_qbl_hap6	3580498	3580499	rs9268301	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6p21.32	C6orf10	rs9268301-A	0.438	2E-6	(Diet carbohydrate )	0.03	[NR] g/d increase	Illumina [899892]	N
612	chr6_qbl_hap6	3582334	3582335	rs368529276	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs368529276-A	0.961	4E-19		2.522	[2.32-2.72]	Illumina [11270530] (imputed)	N
612	chr6_qbl_hap6	3582415	3582416	rs2395148	18576341	Behrens EM	2008-06-24	Arthritis Rheum	Association of the TRAF1-C5 locus on chromosome 9 with juvenile idiopathic arthritis.	Arthritis (juvenile idiopathic)	67 European ancestry cases, 1,952 European ancestry controls, 63 cases	NA	6p21.32	HLA-DRB1	rs2395148-?	NR	2E-10		5.37	[3.02-9.56]	Illumina [524684]	N
612	chr6_qbl_hap6	3586229	3586230	rs13196329	29196614	Sud A	2017-12-01	Nat Commun	Genome-wide association study of classical Hodgkin lymphoma identifies key regulators of disease susceptibility.	Mixed cellularity Hodgkin lymphoma	828 European ancestry cases, 14,315 European ancestry controls	135 cases, 3,069 controls	6p21.32	C6orf10	rs13196329-?	NR	3E-14	(conditioned on rs1633096)	5.88	[3.70-9.09]	Illumina [> 10000000] (imputed)	N
612	chr6_qbl_hap6	3586229	3586230	rs13196329	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral fat	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	6p21.32	C6orf10	rs13196329-C	0.02	3E-6	(women)			Affymetrix, Illumina [2500000] (imputed)	N
612	chr6_qbl_hap6	3587784	3587785	rs9268310	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	Systemic lupus erythematosus	1,639 East Asian ancestry cases, 2,410 East Asian ancestry controls	NA			rs9268310-C	NR	7E-14		0.3626	[0.27-0.46] unit decrease	Illumina [NR] (imputed)	N
612	chr6_qbl_hap6	3590011	3590012	rs137931178	26959717	Nicoletti P	2016-03-09	Pharmacogenet Genomics	HLA-DRB1*16: 01-DQB1*05: 02 is a novel genetic risk factor for flupirtine-induced liver injury.	Drug-induced liver injury	620 European ancestry cases, 10,588 European ancestry controls	NA	6p21.32	MHC	rs137931178-?	NR	7E-6		79.0	[11.72-533.7]	Illumina [NR] (imputed)	N
612	chr6_qbl_hap6	3596075	3596076	rs2143462	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	C6orf10	rs2143462-A	NR	7E-12		0.0268233	[0.019-0.034] unit decrease	Affymetrix [323858] (imputed)	N
612	chr6_qbl_hap6	3596075	3596076	rs2143462	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	C6orf10	rs2143462-A	NR	6E-11		0.0256594	[0.018-0.033] unit decrease	Affymetrix [127266] (imputed)	N
612	chr6_qbl_hap6	3597061	3597062	rs3129934	22457343	Martinelli-Boneschi F	2012-03-28	Mult Scler	A genome-wide association study in progressive multiple sclerosis.	Multiple sclerosis	197 European ancestry cases, 234 European ancestry controls	379 European ancestry cases, 398 European ancestry controls	6p21.32	C6orf10	rs3129934-T	0.10	7E-16		2.34	[1.90-2.87]	Affymetrix [277866]	N
612	chr6_qbl_hap6	3597061	3597062	rs3129934	18941528	Comabella M	2008-10-22	PLoS One	Identification of a novel risk locus for multiple sclerosis at 13q31.3 by a pooled genome-wide scan of 500,000 single nucleotide polymorphisms.	Multiple sclerosis	242 European ancestry cases, 242 European ancestry controls	553 European ancestry cases, 1,033 European ancestry controls	6p21.32	HLA-DRB1	rs3129934-T	NR	9E-11		3.3	[2.3-4.9]	Affymetrix [428867]	N
612	chr6_qbl_hap6	3597419	3597420	rs113857285	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Celiac disease (PheCode 557.1)	1,036 European ancestry cases, 455,312 European ancestry controls	NA	6p21.32		rs113857285-A	0.002145	8E-10		4.04	[2.75-5.33] unit increase	NR [11842647] (imputed)	N
612	chr6_qbl_hap6	3597640	3597641	rs3129939	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.32	c6orf10	rs3129939-G	0.1772	2E-40		2.6	[NR]	Illumina [242824]	N
612	chr6_qbl_hap6	3598506	3598507	rs2273017	21900946	Nakabayashi K	2011-09-08	J Hum Genet	Identification of independent risk loci for Graves' disease within the MHC in the Japanese population.	Graves' disease	1,119 Japanese ancestry cases, 2,718 Japanese ancestry controls	432 Japanese ancestry cases, 1,157 Japanese ancestry controls	6p21.32	MHC	rs2273017-A	0.51	2E-22		1.53	[1.40-1.66]	Perlegen [268068]	N
612	chr6_qbl_hap6	3598825	3598837	rs11275478	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atopic dermatitis	4,296 East Asian ancestry cases, 163,807 East Asian ancestry controls	NA	6p21.32		rs11275478-A	0.218070297	4E-17		0.25364324	[0.19-0.31] unit decrease	Illumina [13428180] (imputed)	N
612	chr6_qbl_hap6	3599144	3599145	rs3129942	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	6p21.32	C6orf10	rs3129942-G	0.742436	3E-18		0.013944	[0.011-0.017] unit decrease	Affymetrix [12370749]	N
612	chr6_qbl_hap6	3599563	3599564	rs3129943	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cirrhosis	2,551 East Asian ancestry cases, 176,175 East Asian ancestry controls	NA	6p21.32		rs3129943-G	0.365494247	2E-11		0.19759746	[0.14-0.26] unit increase	Illumina [13429980] (imputed)	N
612	chr6_qbl_hap6	3599563	3599564	rs3129943	21804548	Hirota T	2011-07-31	Nat Genet	Genome-wide association study identifies three new susceptibility loci for adult asthma in the Japanese population.	Asthma	1,532 Japanese ancestry cases, 3,304 Japanese ancestry controls	5,639 Japanese ancestry cases, 24,608 Japanese ancestry controls	6p21.32	C6orf10	rs3129943-T	0.62	3E-15		1.17	[1.12-1.21]	Illumina [458847]	N
612	chr6_qbl_hap6	3599853	3599854	rs2073044	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	C6orf10	rs2073044-T	NR	3E-16		0.0261214	[0.02-0.032] unit increase	Affymetrix [319769] (imputed)	N
612	chr6_qbl_hap6	3599853	3599854	rs2073044	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs2073044-T	NR	5E-16		0.0258492	[0.02-0.032] unit increase	Affymetrix [319769] (imputed)	N
612	chr6_qbl_hap6	3599853	3599854	rs2073044	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs2073044-T	NR	8E-14		0.0241214	[0.018-0.03] unit increase	Affymetrix [321169] (imputed)	N
612	chr6_qbl_hap6	3599943	3599944	rs2050190	34116867	Tanaka N	2021-06-02	J Allergy Clin Immunol	Eight novel susceptibility loci and putative causal variants in atopic dermatitis.	Atopic dermatitis	2,597 Japanese ancestry cases, 110,504 Japanese ancestry controls, 25,685 European ancestry cases, 76,768 European ancestry controls	NA	6p21.32		rs2050190-?	NR	4E-13		0.8	[0.75-0.85]	Illumina [5170515] (imputed)	N
612	chr6_qbl_hap6	3599943	3599944	rs2050190	22703881	Tang W	2012-06-14	Am J Hum Genet	Genetic associations for activated partial thromboplastin time and prothrombin time, their gene expression profiles, and risk of coronary artery disease.	Activated partial thromboplastin time	9,240 European ancestry individuals	2611 European ancestry individuals	6p21.32	C6orf10	rs2050190-A	NR	7E-7		0.2528	[0.17-0.34] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
612	chr6_qbl_hap6	3600651	3600652	rs9501618	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs9501618-C	0.016	9E-26	(Complement C4, C4A.C4B.4481.34.2)	1.03	[0.83-1.23] unit increase	Affymetrix [10572788] (imputed)	N
612	chr6_qbl_hap6	3600764	3600765	rs2050188	31375628	Tengvall K	2019-08-02	Proc Natl Acad Sci U S A	Molecular mimicry between Anoctamin 2 and Epstein-Barr virus nuclear antigen 1 associates with multiple sclerosis risk.	Anti-anoctamin 2 antibody levels	11,936 European ancestry individuals	NA	6p21.32	NR	rs2050188-G	NR	2E-14		0.07	[0.046-0.094] unit increase	Illumina [615763]	N
612	chr6_qbl_hap6	3600764	3600765	rs2050188	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	6p21.32	HLA-DRB5, C6orf10	rs2050188-T	0.673	9E-6	(EA)	0.0509	[0.028-0.073] unit increase	Affymetrix, Illumina [NR] (imputed)	N
612	chr6_qbl_hap6	3600764	3600765	rs2050188	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	6p21.32	HLA-DRB5, C6orf10	rs2050188-T	0.67	8E-9		1.06	[1.04-1.08]	Affymetrix, Illumina [NR] (imputed)	N
612	chr6_qbl_hap6	3601739	3601740	rs3129944	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs3129944-G	NR	4E-10		0.0217534	[0.015-0.029] unit decrease	Affymetrix [321169] (imputed)	N
612	chr6_qbl_hap6	3602075	3602076	rs9378202	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	C6orf10	rs9378202-C	NR	3E-9		0.0239944	[0.016-0.032] unit decrease	Affymetrix [323123] (imputed)	N
612	chr6_qbl_hap6	3602220	3602221	rs9268402	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	C6orf10	rs9268402-G	NR	2E-17		0.0239092	[0.018-0.029] unit decrease	Affymetrix [319769] (imputed)	N
612	chr6_qbl_hap6	3602220	3602221	rs9268402	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs9268402-G	NR	4E-17		0.0236172	[0.018-0.029] unit decrease	Affymetrix [319769] (imputed)	N
612	chr6_qbl_hap6	3602220	3602221	rs9268402	22751097	Lu X	2012-07-01	Nat Genet	Genome-wide association study in Han Chinese identifies four new susceptibility loci for coronary artery disease.	Coronary heart disease	1,515 Han Chinese ancestry cases, 5,019 Han Chinese ancestry controls	15,460 Han Chinese ancestry cases, 11,472 Han Chinese ancestry controls	6p21.32	BTNL2, C6orf10	rs9268402-G	0.59	3E-15		1.16	[1.12-1.20]	Affymetrix [~ 2200000] (imputed)	N
612	chr6_qbl_hap6	3602265	3602266	rs9391858	31566214	Kulminski AM	2019-09-30	J Gerontol A Biol Sci Med Sci	Quantitative and qualitative role of antagonistic heterogeneity in genetics of blood lipids.	Total cholesterol levels	29,902 European ancestry individuals	NA			rs9391858-G	0.14	3E-8		2.4	[1.56-3.24] unit increase	Affymetrix, Illumina [up to 2500000] (imputed)	N
612	chr6_qbl_hap6	3602984	3602985	rs73729220	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.32	NR	rs73729220-G	0.015	6E-7	(women)	0.670827	[0.41-0.93] unit increase	Affymetrix [up to 8900000] (imputed)	N
612	chr6_qbl_hap6	3602984	3602985	rs73729220	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.32	NR	rs73729220-G	0.015	4E-9		0.429629	[0.29-0.57] unit increase	Affymetrix [up to 8900000] (imputed)	N
612	chr6_qbl_hap6	3603402	3603403	rs3129945	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p21.32	NR	rs3129945-?	NR	3E-6		4.704	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
612	chr6_qbl_hap6	3604234	3604235	rs3117106	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	C6orf10	rs3117106-C	NR	4E-11		0.0274536	[0.019-0.036] unit increase	Affymetrix [323123] (imputed)	N
612	chr6_qbl_hap6	3605951	3605952	rs12528797	28107422	de Vries PS	2017-01-20	PLoS One	Comparison of HapMap and 1000 Genomes Reference Panels in a Large-Scale Genome-Wide Association Study.	Fibrinogen levels	91,953 European ancestry individuals (imputed to HapMap)		6p21.32	C6orf10, HCG23	rs12528797-?	NR	9E-9		0.0095	unit increase	Affymetrix, Illumina [2749429] (imputed)	N
612	chr6_qbl_hap6	3606148	3606149	rs7758128	21326295	Jin Y	2011-02-17	J Invest Dermatol	Genome-wide analysis identifies a quantitative trait locus in the MHC class II region associated with generalized vitiligo age of onset.	Vitiligo	1,339 European ancestry cases	677 European ancestry cases	6p21.32	BTNL2, C6orf10	rs7758128-A	0.06	8E-11				Illumina [520460]	N
612	chr6_qbl_hap6	3606460	3606461	rs2395153	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs2395153-G	NR	9E-12		0.0195615	[0.014-0.025] unit increase	Affymetrix [321114] (imputed)	N
612	chr6_qbl_hap6	3606460	3606461	rs2395153	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs2395153-G	NR	3E-19		0.0258131	[0.02-0.031] unit increase	Affymetrix [321169] (imputed)	N
612	chr6_qbl_hap6	3606554	3606555	rs2894254	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	6p21.32	C6orf10, BTNL2	rs2894254-T	NR	1E-13		0.238275	[0.18-0.3] unit increase	Illumina [at least 950000] (imputed)	N
612	chr6_qbl_hap6	3606554	3606555	rs2894254	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.32	NOTCH4, C6orf10	rs2894254-T	0.8879	1E-7	(EA)	0.0337	[0.021-0.046] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
612	chr6_qbl_hap6	3606554	3606555	rs2894254	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.32	BTNL2	rs2894254-T	0.8879	3E-9	(EA, men)	0.0557	[0.037-0.074] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
612	chr6_qbl_hap6	3606554	3606555	rs2894254	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6p21.32	BTNL2	rs2894254-T	0.888	6E-8	(men)	0.058	[0.037-0.079] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
612	chr6_qbl_hap6	3606554	3606555	rs2894254	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6p21.32	BTNL2	rs2894254-T	0.888	6E-8	(EA, men)	0.058	[0.037-0.079] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
612	chr6_qbl_hap6	3606554	3606555	rs2894254	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6p21.32	BTNL2	rs2894254-T	0.8879	6E-7	(EA)	0.0363	[0.022-0.051] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
612	chr6_qbl_hap6	3606554	3606555	rs2894254	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.32	NOTCH4, C6orf10	rs2894254-?	0.8879	5E-7	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
612	chr6_qbl_hap6	3606554	3606555	rs2894254	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.32	BTNL2	rs2894254-?	0.8879	9E-9	(men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
612	chr6_qbl_hap6	3606554	3606555	rs2894254	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.32	BTNL2	rs2894254-?	0.8879	9E-9	(EA, men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
612	chr6_qbl_hap6	3607356	3607357	rs9268435	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Serum alkaline phosphatase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	6p21.32	LOC101929163	rs9268435-?		1E-10		0.0358	[0.025-0.047] unit decrease	Illumina [31500000] (imputed)	N
612	chr6_qbl_hap6	3610422	3610423	rs3117103	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	6p21.32		rs3117103-A	0.859948	4E-9		0.0339726	[0.023-0.045] unit decrease	NR [11722792] (imputed)	N
612	chr6_qbl_hap6	3611319	3611320	rs28732201	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p21.32	NR	rs28732201-?	NR	6E-16		0.1787	[0.14-0.22] unit decrease	Illumina [at least 560000] (imputed)	N
612	chr6_qbl_hap6	3612431	3612432	rs6930777	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6p21.32		rs6930777-?	NR	5E-17		1.14262	[1.11-1.17]	NR [685523]	N
612	chr6_qbl_hap6	3613480	3613481	rs9268465	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HCG23	rs9268465-T	NR	6E-10		0.0196001	[0.013-0.026] unit decrease	Affymetrix [319769] (imputed)	N
612	chr6_qbl_hap6	3613480	3613481	rs9268465	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HCG23	rs9268465-T	NR	2E-8		0.0196784	[0.013-0.027] unit decrease	Affymetrix [323858] (imputed)	N
612	chr6_qbl_hap6	3613480	3613481	rs9268465	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HCG23	rs9268465-T	NR	1E-9		0.0191769	[0.013-0.025] unit decrease	Affymetrix [319769] (imputed)	N
612	chr6_qbl_hap6	3614776	3614777	rs9279623	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	6p21.32	HCG23	rs9279623-G	0.5081	7E-9		5.794	NR z score increase	Illumina [26237160] (imputed)	N
612	chr6_qbl_hap6	3615286	3615287	rs4424066	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	6p21.32	NR	rs4424066-A	0.578029598622173	7E-14		0.024764335	units decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
612	chr6_qbl_hap6	3618097	3618098	rs146003878	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs146003878-A	0.016	5E-11	(conditional)	1.678	[1.52-1.83]	Illumina [11270530] (imputed)	N
612	chr6_qbl_hap6	3619059	3619060	rs3129950	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.32	BTNL2	rs3129950-G	0.8899	4E-9	(men)	0.0593	[0.04-0.079] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
612	chr6_qbl_hap6	3619128	3619129	rs3117099	22688191	Bergen SE	2012-06-12	Mol Psychiatry	Genome-wide association study in a Swedish population yields support for greater CNV and MHC involvement in schizophrenia compared with bipolar disorder.	Bipolar disorder and schizophrenia	2,111 European ancestry schizophrenia cases, 836 European ancestry bipolar disorder cases, 2,535 European ancestry controls	NA	6p21.32	other genes, MHC	rs3117099-?	NR	3E-6		1.25	[NR]	Affymetrix [745006]	N
612	chr6_qbl_hap6	3619371	3619372	rs3117098	21804548	Hirota T	2011-07-31	Nat Genet	Genome-wide association study identifies three new susceptibility loci for adult asthma in the Japanese population.	Asthma	1,532 Japanese ancestry cases, 3,304 Japanese ancestry controls	5,639 Japanese ancestry cases, 24,608 Japanese ancestry controls	6p21.32	BTNL2	rs3117098-G	0.25	5E-12		1.16	[1.11-1.21]	Illumina [458847]	N
612	chr6_qbl_hap6	3619407	3619408	rs9348883	29903748	Debiec H	2018-06-14	J Am Soc Nephrol	Transethnic, Genome-Wide Analysis Reveals Immune-Related Risk Alleles and Phenotypic Correlates in Pediatric Steroid-Sensitive Nephrotic Syndrome.	Childhood steroid-sensitive nephrotic syndrome	244 European ancestry cases, 2,552 European ancestry controls, 56 African cases, 454 African controls, 85 Maghrebian cases, 261 Maghrebian controls	NA	6p21.32	LOC101929163, HCG23, BTNL2	rs9348883-T	0.94	9E-7	(conditioned on rs1063348 & rs28366266)	3.5	[2.13-5.83]	Illumina [at least 7529344] (imputed)	N
612	chr6_qbl_hap6	3619547	3619548	rs3117097	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling nervous	373,121 European ancestry individuals	NA	6p21.32	PSORS1C1	rs3117097-A	0.164022	4E-10		6.26	z score increase	NR [10847151] (imputed)	N
612	chr6_qbl_hap6	3620318	3620319	rs16870123	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	6p21.32	NR	rs16870123-?	NR	1E-10		6.408	NR z score decrease	Illumina [at least 830937] (imputed)	N
612	chr6_qbl_hap6	3621990	3621991	rs3817971	34871226	Kim SY	2021-11-01	Medicine (Baltimore)	Genome-wide association study identifies BTNL2 associated with atopic asthma in children.	Atopic asthma	243 East Asian ancestry child cases, 134 East Asian ancestry child controls	NA	6p21.32		rs3817971-A	NR	6E-7		3.509	[2.09-5.889]	Affymetrix [423461]	N
612	chr6_qbl_hap6	3621990	3621991	rs3817971	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p21.32	C6orf10, BTNL2	rs3817971-C	0.03	5E-6	(Turkish)	2.62	[1.71-4.01]	Illumina [up to 547389]	N
612	chr6_qbl_hap6	3622342	3622343	rs17202393	33592630	Herrera-Rivero M	2021-02-16	Thromb Haemost	Single- and Multimarker Genome-Wide Scans Evidence Novel Genetic Risk Modifiers for Venous Thromboembolism.	Venous thromboembolism	964 European ancestry cases, 899 European ancestry controls	NA	6p21.32	BTNL2, HCG23	rs17202393-A	NR	4E-38		0.03743	[0.02273-0.06163]	Illumina [484621]	N
612	chr6_qbl_hap6	3622868	3622869	rs114516436	27629369	Gao J	2016-09-15	Neuropsychopharmacology	Genome-Wide Association Study of Loneliness Demonstrates a Role for Common Variation.	Loneliness (multivariate analysis)	8,490 European ancestry individuals, 1,228 African American individuals, 867 Hispanic American individuals, 175 individuals	NA	6p21.32	BTNL2, HCG23, C6orf10	rs114516436-?	NR	2E-6	(EA)			Illumina [7205781] (imputed)	N
612	chr6_qbl_hap6	3624072	3624073	rs1980493	25936594	Tomer Y	2015-04-27	J Autoimmun	Genome wide identification of new genes and pathways in patients with both autoimmune thyroiditis and type 1 diabetes.	Type 1 diabetes and autoimmune thyroid diseases	346 European ancestry cases, 727 European ancestry controls	185 European ancestry cases, 340 European ancestry controls	6p21.32	BTNL2	rs1980493-G	NR	2E-20		2.5034		Illumina [514008]	N
612	chr6_qbl_hap6	3624072	3624073	rs1980493	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.32	BTNL2	rs1980493-G	0.1656	1E-48		2.87	[NR]	Illumina [242824]	N
612	chr6_qbl_hap6	3624072	3624073	rs1980493	19287509	Cui J	2009-03-14	Mol Med	Genome-wide association study of determinants of anti-cyclic citrullinated peptide antibody titer in adults with rheumatoid arthritis.	Anti-cyclic Citrullinated Peptide Antibody	531 European ancestry cases	849 European ancestry cases	6p21.32	HLA-DRA, BTNL2	rs1980493-?	0.13	5E-7				Affymetrix [97248]	N
612	chr6_qbl_hap6	3624673	3624674	rs2076530	22936702	Hofmann S	2012-08-30	Eur Respir J	Genome-wide association analysis reveals 12q13.3-q14.1 as new risk locus for sarcoidosis.	Sarcoidosis	637 European ancestry cases, 1,233 European ancestry controls	3,121 European ancestry cases, 4,284 European ancestry controls	6p21.32	BTNL2	rs2076530-?	NR	3E-11	(Chronic)			Affymetrix [677619]	N
612	chr6_qbl_hap6	3624701	3624702	rs9268480	19915573	Asano K	2009-11-15	Nat Genet	A genome-wide association study identifies three new susceptibility loci for ulcerative colitis in the Japanese population.	Ulcerative colitis	376 Japanese ancestry cases, 934 Japanese ancestry controls	376 Japanese ancestry cases, 1,097 Japanese ancestry controls	6p21.32	BTNL2	rs9268480-G	0.91	3E-6		1.82	[1.43-2.33]	Illumina [513923]	N
612	chr6_qbl_hap6	3624812	3624813	rs2076529	32766473	Yoshida K	2020-05-19	Hepatol Commun	Genome-Wide Association Study of Lean Nonalcoholic Fatty Liver Disease Suggests Human Leukocyte Antigen as a Novel Candidate Locus.	Lean nonalcoholic fatty liver disease	275 Japanese ancestry cases, 1,411 Japanese ancestry controls	NA	6p21.32	NR	rs2076529-?	NR	2E-7		1.66	[1.37-2.00]	Affymetrix [NR]	N
612	chr6_qbl_hap6	3624812	3624813	rs2076529	20935629	Heid IM	2010-10-10	Nat Genet	Meta-analysis identifies 13 new loci associated with waist-hip ratio and reveals sexual dimorphism in the genetic basis of fat distribution.	Waist-hip ratio	Up to 77,167 European ancestry individuals	Up to 113,636 European ancestry individuals	6p21.32	BTNL2	rs2076529-C	0.43	4E-7		0.02	[NR] unit increase	Affymetrix, Illumina, Perlegen [up to 2850269] (imputed)	N
612	chr6_qbl_hap6	3627278	3627279	rs4248166	29534301	Nishida N	2018-03-13	Hepatology	Key HLA-DRB1-DQB1 haplotypes and role of the BTNL2 gene for response to a hepatitis B vaccine.	Response to hepatitis B vaccine	107 Japanese ancestry low responder individuals, 351 Japanese ancestry intermediate responder individuals, 735 Japanese ancestry high responder individuals	NA	6p21.32	BTNL2	rs4248166-?		1E-12		0.124	unit decrease	Affymetrix [427664]	N
612	chr6_qbl_hap6	3627278	3627279	rs4248166	26819262	Zhou Y	2016-01-27	Mult Scler	Genetic loci for Epstein-Barr virus nuclear antigen-1 are associated with risk of multiple sclerosis.	Epstein Barr virus nuclear antigen 1 IgG levels	1,243 parents and up to 2,356 children from 992 families, 1,956 Mexican American individuals		6p21.32	NR	rs4248166-T		9E-11	(Mexican American)	0.16	unit decrease	Illumina [up to 2428201] (imputed)	N
612	chr6_qbl_hap6	3627278	3627279	rs4248166	26819262	Zhou Y	2016-01-27	Mult Scler	Genetic loci for Epstein-Barr virus nuclear antigen-1 are associated with risk of multiple sclerosis.	Epstein Barr virus nuclear antigen 1 IgG levels	1,243 parents and up to 2,356 children from 992 families, 1,956 Mexican American individuals		6p21.32	NR	rs4248166-T		1E-9		0.16	unit decrease	Illumina [up to 2428201] (imputed)	N
612	chr6_qbl_hap6	3627874	3627875	rs3117116	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein BGLAP	5,367 Icelandic ancestry individuals	NA	6p21.32		rs3117116-G	0.2246	5E-20		0.208543	[0.16-0.25] unit decrease	Illumina [7506463] (imputed)	N
612	chr6_qbl_hap6	3628944	3628945	rs3817963	27501781	Shiraishi K	2016-08-09	Nat Commun	Association of variations in HLA class II and other loci with susceptibility to EGFR-mutated lung adenocarcinoma.	EGFR mutation-positive lung adenocarcinoma	663 Japanese ancestry cases, 4,367 Japanese ancestry controls	2,510 Japanese ancestry cases, 10,791 Japanese ancestry controls	6p21.32	BTNL2	rs3817963-G	0.316	1E-16		1.29	[1.21-1.37]	Illumina [NR] (imputed)	N
612	chr6_qbl_hap6	3628944	3628945	rs3817963	23472185	Mero IL	2013-03-05	PLoS One	Oligoclonal band status in Scandinavian multiple sclerosis patients is associated with specific genetic risk alleles.	Multiple sclerosis (OCB status)	1,367 European ancestry OCB positive cases, 161 European ancestry OCB negative cases, 428 European ancestry controls	NA	6p21.32	BTNL2	rs3817963-?	NR	8E-6	(OCB positive vs. controls)	1.52	[1.27-1.79]	Illumina [495970]	N
612	chr6_qbl_hap6	3628944	3628945	rs3817963	23472185	Mero IL	2013-03-05	PLoS One	Oligoclonal band status in Scandinavian multiple sclerosis patients is associated with specific genetic risk alleles.	Multiple sclerosis (OCB status)	1,367 European ancestry OCB positive cases, 161 European ancestry OCB negative cases	3,029 European ancestry OCB positive cases, 374 European ancestry OCB negative cases	6p21.32	BTNL2	rs3817963-?	NR	6E-10		1.61	[1.38-1.87]	Illumina [495970]	N
612	chr6_qbl_hap6	3628944	3628945	rs3817963	23321320	Urabe Y	2013-01-12	J Hepatol	A genome-wide association study of HCV-induced liver cirrhosis in the Japanese population identifies novel susceptibility loci at the MHC region.	Hepatitis C induced liver cirrhosis	682 Japanese ancestry cases, 1,045 Japanese ancestry controls	936 Japanese ancestry cases, 3,809 Japanese ancestry controls	6p21.32	BTNL2	rs3817963-A	0.315	1E-8		1.3	[1.18-1.42]	Illumina [431618]	N
612	chr6_qbl_hap6	3628944	3628945	rs3817963	22797724	Shiraishi K	2012-07-15	Nat Genet	A genome-wide association study identifies two new susceptibility loci for lung adenocarcinoma in the Japanese population.	Lung adenocarcinoma	1,695 Japanese ancestry cases, 5,333 Japanese ancestry controls	4,334 Japanese ancestry cases, 8,202 Japanese ancestry controls	6p21.32	BTNL2	rs3817963-G	0.318	3E-10		1.18	[1.12-1.24]	Illumina [538166]	N
612	chr6_qbl_hap6	3629415	3629416	rs9268485	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	BTNL2	rs9268485-C	NR	1E-22		0.0275591	[0.022-0.033] unit decrease	Affymetrix [319769] (imputed)	N
612	chr6_qbl_hap6	3629415	3629416	rs9268485	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	BTNL2	rs9268485-C	NR	2E-12		0.0220667	[0.016-0.028] unit decrease	Affymetrix [323858] (imputed)	N
612	chr6_qbl_hap6	3629415	3629416	rs9268485	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	BTNL2	rs9268485-C	NR	4E-22		0.0271651	[0.022-0.033] unit decrease	Affymetrix [319769] (imputed)	N
612	chr6_qbl_hap6	3629415	3629416	rs9268485	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	BTNL2	rs9268485-C	NR	3E-11		0.0208559	[0.015-0.027] unit decrease	Affymetrix [127266] (imputed)	N
612	chr6_qbl_hap6	3629415	3629416	rs9268485	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	BTNL2	rs9268485-C	NR	3E-13		0.0204722	[0.015-0.026] unit increase	Affymetrix [321016] (imputed)	N
612	chr6_qbl_hap6	3629415	3629416	rs9268485	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	BTNL2	rs9268485-C	NR	2E-12		0.0216048	[0.016-0.028] unit increase	Affymetrix [323123] (imputed)	N
612	chr6_qbl_hap6	3629417	3629418	rs9268486	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs9268486-T	0.248	8E-27	(conditional)	1.384	[1.33-1.44]	Illumina [11270530] (imputed)	N
612	chr6_qbl_hap6	3630341	3630342	rs3763305	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	6p21.32		rs3763305-G	0.949	4E-9				Affymetrix [10369434] (imputed)	N
612	chr6_qbl_hap6	3630341	3630342	rs3763305	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.32	BTNL2	rs3763305-A	0.051434	4E-15		0.041934814	[0.031-0.052] unit decrease	Affymetrix [93095623] (imputed)	N
612	chr6_qbl_hap6	3631440	3631441	rs9461741	25569183	Vijai J	2015-01-08	Nat Commun	A genome-wide association study of marginal zone lymphoma shows association to the HLA region.	Marginal zone lymphoma	825 European ancestry cases, 6,221 European ancestry controls	456 European ancestry cases, 906 European ancestry controls	6p21.32	BTNL2	rs9461741-C	0.018	4E-15		2.66	[2.08-3.39]	Illumina [611856]	N
612	chr6_qbl_hap6	3631469	3631470	rs2076525	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	BTNL2	rs2076525-C	NR	9E-15		0.0237827	[0.018-0.03] unit increase	Affymetrix [321169] (imputed)	N
612	chr6_qbl_hap6	3631688	3631689	rs2076523	29903748	Debiec H	2018-06-14	J Am Soc Nephrol	Transethnic, Genome-Wide Analysis Reveals Immune-Related Risk Alleles and Phenotypic Correlates in Pediatric Steroid-Sensitive Nephrotic Syndrome.	Childhood steroid-sensitive nephrotic syndrome	56 African cases, 454 African controls	NA	6p21.32	BTNL2	rs2076523-?	NR	2E-9		4.8	[2.9-7.9]	Illumina [at least 7529344] (imputed)	N
612	chr6_qbl_hap6	3634038	3634039	rs10947260	28369058	Folkersen L	2017-04-03	PLoS Genet	Mapping of 79 loci for 83 plasma protein biomarkers in cardiovascular disease.	Blood protein levels in cardiovascular risk	3,394 European ancestry individuals	2,639 individuals	6p21.32	NOTCH4, AGER, ATF6B	rs10947260-C	0.1	6E-9		0.25	unit increase	Illumina [5270624] (imputed)	N
612	chr6_qbl_hap6	3634085	3634086	rs10947261	23850713	Yang SK	2013-07-14	Gut	Genome-wide association study of Crohn's disease in Koreans revealed three new susceptibility loci and common attributes of genetic susceptibility across ethnic populations.	Crohn's disease	532 Korean ancestry cases, 733 Korean ancestry controls	1,779 Korean ancestry cases, 1,709 Korean ancestry controls	6p21.32	HLA-DRA, HLA-DRB5, BTNL2, HLA-DRB1, HLA-DQA1	rs10947261-T	0.294	3E-12		1.36	[1.25-1.49]	Illumina [5664371] (imputed)	N
612	chr6_qbl_hap6	3634165	3634166	rs10947262	20305777	Nakajima M	2010-03-18	PLoS One	New sequence variants in HLA class II/III region associated with susceptibility to knee osteoarthritis identified by genome-wide association study.	Knee osteoarthritis	899 Japanese ancestry cases, 3,396 Japanese ancestry controls	167 Japanese ancestry cases, 347 Japanese ancestry controls, 813 European ancestry  cases, 1,071 European ancestry controls,	6p21.32	HLA-DQA2, HLA-DQB1, BTNL2	rs10947262-T	0.42	5E-9		1.31	[1.20-1.44]	Illumina [459393]	N
612	chr6_qbl_hap6	3634562	3634563	rs3806156	20410501	Jin Y	2010-04-21	N Engl J Med	Variant of TYR and autoimmunity susceptibility loci in generalized vitiligo.	Vitiligo	1,392 European ancestry cases, 2,629 European ancestry controls	647 European ancestry cases, 1,056 European ancestry controls, 183 European ancestry trios, 1,383 European ancestry individuals from 332 families	6p21.32	HLA-DRA, BTNL2, HLA-DQA1	rs3806156-T	0.37	7E-19		1.42	[1.32-1.54]	Illumina [520460]	N
612	chr6_qbl_hap6	3634665	3634666	rs3806157	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	BTNL2	rs3806157-G	NR	4E-8		0.0162252	[0.01-0.022] unit increase	Affymetrix [321114] (imputed)	N
612	chr6_qbl_hap6	3635459	3635460	rs2395158	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	6p21.32	BTNL2	rs2395158-A	0.830652	5E-40		0.0345684	[0.029-0.04] unit increase	Affymetrix [NR] (imputed)	N
612	chr6_qbl_hap6	3636837	3636838	rs3763309	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls	NA	6p21.32	HLA-DRA, BTNL2	rs3763309-A	0.21	1E-18		0.13	[0.091-0.169] unit increase	Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
612	chr6_qbl_hap6	3636837	3636838	rs3763309	24449572	Orozco G	2014-01-01	Arthritis Rheumatol	Novel rheumatoid arthritis susceptibility locus at 22q12 identified in an extended UK genome-wide association study.	Rheumatoid arthritis	3,034 European ancestry cases, 5,271 European ancestry controls	4,726 European ancestry cases, 2,625 European ancestry controls	6p21.32	HLA-DRB1	rs3763309-?		2E-124		2.3	[2.14-2.46]	Affymetrix, Illumina [1831729] (imputed)	N
612	chr6_qbl_hap6	3637040	3637041	rs3763311	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Cancer	56,634 White British ancestry cases, 218,196 White British ancestry controls	NA	6p21.32		rs3763311-?	NR	1E-5		0.967842	[0.95-0.98]	NR [688737]	N
612	chr6_qbl_hap6	3637212	3637213	rs3763312	26039976	Wei Z	2015-06-17	Sci Rep	Genome-Wide Association Studies of HIV-1 Host Control in Ethnically Diverse Chinese Populations.	HIV-1 viral setpoint	326 Han Chinese ancestry cases, 58 Dai Chinese ancestry cases, 40 Jingpo Chinese ancestry cases, 83 Uygur Chinese ancestry cases, 11 Hui Chinese ancestry cases, 20 East Asian cases	NA	6p21.32	BTNL2, HLA-DRA	rs3763312-A	0.15	6E-6	(Han)	0.4002	unit decrease	Illumina [up to 528294]	N
612	chr6_qbl_hap6	3637224	3637225	rs17208853	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Skin reflectance (Melanin index)	720 South Asian ancestry individuals		6p21.32	NR	rs17208853-C	NR	8E-6		0.649209	[0.36-0.93] unit decrease	Affymetrix, Illumina [at least 398118] (imputed)	N
612	chr6_qbl_hap6	3637335	3637336	rs3763313	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.32		rs3763313-C	0.17885300000000004	1E-26		1.0591807	[1.05-1.08]	Affymetrix, Illumina [9851866] (imputed)	N
612	chr6_qbl_hap6	3637335	3637336	rs3763313	20041166	Fellay J	2009-12-24	PLoS Genet	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	6p21.32	NOTCH4, BTNL2	rs3763313-?	NR	2E-6	(progression)			Illumina [NR]	N
612	chr6_qbl_hap6	3637381	3637382	rs9268500	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (drugs affecting bone structure and mineralization)	7,870 European ancestry cases, 207,798 European ancestry controls	NA	6p21.32	BTNL2	rs9268500-T	0.0508279	2E-8		0.20306516	[0.13-0.27] unit increase	Affymetrix [7288503] (imputed)	N
612	chr6_qbl_hap6	3637652	3637653	rs3763317	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	BTNL2	rs3763317-T	NR	1E-12		0.0200715	[0.015-0.026] unit increase	Affymetrix [319769] (imputed)	N
612	chr6_qbl_hap6	3637652	3637653	rs3763317	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	BTNL2	rs3763317-T	NR	1E-10		0.0202983	[0.014-0.026] unit increase	Affymetrix [323858] (imputed)	N
612	chr6_qbl_hap6	3637652	3637653	rs3763317	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	BTNL2	rs3763317-T	NR	6E-12		0.0194272	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
612	chr6_qbl_hap6	3637652	3637653	rs3763317	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	BTNL2	rs3763317-T	NR	2E-9		0.0188282	[0.013-0.025] unit increase	Affymetrix [127266] (imputed)	N
612	chr6_qbl_hap6	3637652	3637653	rs3763317	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	BTNL2	rs3763317-T	NR	2E-14		0.0235125	[0.017-0.03] unit decrease	Affymetrix [323123] (imputed)	N
612	chr6_qbl_hap6	3637652	3637653	rs3763317	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	BTNL2	rs3763317-T	NR	2E-13		0.0209669	[0.015-0.027] unit increase	Affymetrix [321169] (imputed)	N
612	chr6_qbl_hap6	3637652	3637653	rs3763317	23028341	Yang X	2012-09-13	PLoS Genet	Genome-wide association study for serum complement C3 and C4 levels in healthy Chinese subjects.	Complement C3 and C4 levels	1,999 Han Chinese ancestry male individuals	1,496 Han Chinese ancestry male individuals	6p21.32	HLA-DRB	rs3763317-C	0.37	9E-66	(Serum level of C4)	0.12	[0.10-0.14] g/L increase	Illumina [1940245] (imputed)	N
612	chr6_qbl_hap6	3637917	3637918	rs116835963	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs116835963-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
612	chr6_qbl_hap6	3638272	3638273	rs9268505	33713768	Akenroye AT	2021-03-10	J Allergy Clin Immunol	Genome-wide Association study of Asthma, Total IgE, and Lung function in a Cohort of Peruvian Children.	Serum IgE levels	727 Peruvian individuals	NA	6p21.32		rs9268505-?	NR	6E-8		0.211	unit increase	Illumina [NR] (imputed)	N
612	chr6_qbl_hap6	3640180	3640180	rs574027387	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs574027387-A	0.673	3E-23	(conditional)	1.376	[1.31-1.44]	Illumina [11270530] (imputed)	N
612	chr6_qbl_hap6	3640249	3640250	rs3129962	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	6p21.32	BTNL2	rs3129962-G	0.870649	8E-18		0.0243898	[0.019-0.03] unit increase	Affymetrix [NR] (imputed)	N
612	chr6_qbl_hap6	3640355	3640356	rs9268516	33328473	Ahluwalia TS	2020-12-16	Nat Commun	FUT2-ABO epistasis increases the risk of early childhood asthma and Streptococcus pneumoniae respiratory illnesses.	Childhood asthma with severe exacerbations	2,866 European ancestry cases,  65,415 European ancestry controls	NA	6p21.32	NR	rs9268516-A	NR	5E-10		0.1936	[0.13-0.25] unit increase	Illumina [up to 525976] (imputed)	N
612	chr6_qbl_hap6	3640355	3640356	rs9268516	23028483	Ramasamy A	2012-09-28	PLoS One	Genome-wide association studies of asthma in population-based cohorts confirm known and suggested loci and identify an additional association near HLA.	Asthma	1,716 European ancestry cases, 16,888 European ancestry controls	4,035 European ancestry cases, 11,251 European ancestry controls	6p21.32	HLA-DRA, BTNL2	rs9268516-T	0.24	1E-8		1.15	[1.10-1.21]	Affymetrix, Illumina [~ 2200000] (imputed)	N
612	chr6_qbl_hap6	3640602	3640603	rs9405098	23321320	Urabe Y	2013-01-12	J Hepatol	A genome-wide association study of HCV-induced liver cirrhosis in the Japanese population identifies novel susceptibility loci at the MHC region.	Hepatitis C induced liver cirrhosis	682 Japanese ancestry cases, 1,045 Japanese ancestry controls	936 Japanese ancestry cases, 3,809 Japanese ancestry controls	6p21.32	intergenic	rs9405098-A	0.253	1E-10		1.37	[1.24-1.51]	Illumina [431618]	N
612	chr6_qbl_hap6	3641775	3641776	rs9380294	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p21.32	BTNL2, HLA-DRA	rs9380294-C	0.01	7E-6	(EA)	4.76	[2.25-10.07]	Illumina [up to 547389]	N
612	chr6_qbl_hap6	3642602	3642603	rs7759742	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI in non-smokers	75,379 European ancestry women, 45,811 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	6p21.32	BTNL2	rs7759742-A	0.5117	1E-7		0.0144	[0.0091-0.0197] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
612	chr6_qbl_hap6	3642602	3642603	rs7759742	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (joint analysis main effects and smoking interaction)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	6p21.32	BTNL2	rs7759742-A	0.5117	1E-8				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
612	chr6_qbl_hap6	3642602	3642603	rs7759742	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	6p21.32	BTNL2	rs7759742-A	0.5117	3E-6	(men)	0.0248	[0.014-0.035] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
612	chr6_qbl_hap6	3642602	3642603	rs7759742	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	6p21.32	BTNL2	rs7759742-A	0.5117	1E-9		0.0217	[0.015-0.029] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
612	chr6_qbl_hap6	3642602	3642603	rs7759742	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex x age interaction (4df test)	up to 43,776 European ancestry men aged <50, up to 50,526 European ancestry women aged <50, up to 69,944 European ancestry men aged >50, up to 88,129 European ancestry women aged >50	NA	6p21.32	NR	rs7759742-A	0.509001212874385	2E-12				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
612	chr6_qbl_hap6	3642602	3642603	rs7759742	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p21.32	BTNL2	rs7759742-A	0.517	2E-11		0.0224	[0.016-0.029] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
612	chr6_qbl_hap6	3642602	3642603	rs7759742	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p21.32	BTNL2	rs7759742-A	0.5158	5E-8	(women)	0.0241	[0.015-0.033] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
612	chr6_qbl_hap6	3642602	3642603	rs7759742	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p21.32	BTNL2	rs7759742-A	0.5154	4E-6	(men)	0.0223	[0.013-0.032] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
612	chr6_qbl_hap6	3642602	3642603	rs7759742	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p21.32	BTNL2	rs7759742-A	0.511	4E-11	(EA)	0.0226	[0.016-0.029] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
612	chr6_qbl_hap6	3642602	3642603	rs7759742	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p21.32	BTNL2	rs7759742-A	0.5107	2E-7	(EA, women)	0.0237	[0.015-0.033] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
612	chr6_qbl_hap6	3642602	3642603	rs7759742	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p21.32	BTNL2	rs7759742-A	0.5106	5E-6	(EA, men)	0.0226	[0.013-0.032] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
612	chr6_qbl_hap6	3643139	3643139	rs143325653	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Scarlet fever	6,812 European ancestry cases, 113,837 European ancestry controls	NA	6p21.32	NR	rs143325653-?	NR	6E-7		0.0908	[0.055-0.126] unit increase	Illumina [at least 560000] (imputed)	N
612	chr6_qbl_hap6	3643139	3643139	rs143325653	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p21.32	NR	rs143325653-?	NR	3E-20		0.1121	[0.088-0.136] unit decrease	Illumina [at least 560000] (imputed)	N
612	chr6_qbl_hap6	3643921	3643922	rs4959027	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	Blood glucose levels	291,107 British ancestry individuals	NA	6p21.32	TBC1D22B	rs4959027-A	0.234405	5E-6		0.00399988	[0.0023-0.0057] unit decrease	Affymetrix [9463307] (imputed)	N
612	chr6_qbl_hap6	3643921	3643922	rs4959027	23449627	Cousminer DL	2013-02-27	Hum Mol Genet	Genome-wide association and longitudinal analyses reveal genetic loci linking pubertal height growth, pubertal timing and childhood adiposity.	Pubertal anthropometrics	up to 5,043 European ancestry males, up to 5,756 European ancestry females	NA	6p21.32	TAP2, HLA-DRA	rs4959027-G	0.82	9E-7	(Pubertal growth)	0.09	[0.057-0.123] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
612	chr6_qbl_hap6	3644009	3644010	rs4959028	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Effector Memory CD4+ T cell %CD4+ T cell	3,427 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs4959028-G	0.22877	3E-10		0.2111	[0.15-0.28] unit increase	Illumina [18349913] (imputed)	N
612	chr6_qbl_hap6	3644079	3644080	rs6930571	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.32	BTNL2	rs6930571-T	0.1659	2E-8		0.0561	[0.037-0.076] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
612	chr6_qbl_hap6	3644444	3644445	rs6912701	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.32	NR	rs6912701-T	0.014	6E-7	(women)	0.704901	[0.43-0.98] unit increase	Affymetrix [up to 8900000] (imputed)	N
612	chr6_qbl_hap6	3644444	3644445	rs6912701	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.32	NR	rs6912701-T	0.014	3E-9		0.454746	[0.31-0.6] unit increase	Affymetrix [up to 8900000] (imputed)	N
612	chr6_qbl_hap6	3645398	3645399	rs9268541	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6p21.32		rs9268541-C	0.054698	1E-10		0.03155108	[0.022-0.041] unit increase	Affymetrix [93095623] (imputed)	N
612	chr6_qbl_hap6	3645763	3645764	rs72847996	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs72847996-A	0.19	4E-8		4.04	[3.10-5.28]	Illumina [NR] (imputed)	N
612	chr6_qbl_hap6	3645804	3645805	rs80032720	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	IgA nephropathy	1,180 East Asian ancestry cases, 899 East Asian ancestry controls	NA			rs80032720-A	NR	9E-8		0.524129	[0.33-0.72] unit decrease	Illumina [NR] (imputed)	N
612	chr6_qbl_hap6	3646270	3646271	rs3135377	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	BTNL2	rs3135377-A	NR	2E-8		0.0200714	[0.013-0.027] unit increase	Affymetrix [323123] (imputed)	N
612	chr6_qbl_hap6	3648680	3648681	rs2395163	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	BTNL2	rs2395163-C	NR	7E-9		0.0197156	[0.013-0.026] unit increase	Affymetrix [321114] (imputed)	N
612	chr6_qbl_hap6	3648680	3648681	rs2395163	22451204	Pankratz N	2012-03-01	Ann Neurol	Meta-analysis of Parkinson's disease: identification of a novel locus, RIT2.	Parkinson's disease	4,238 European ancestry cases, 4,239 European ancestry controls	3,738 European ancestry cases, 2,111 European ancestry controls	6p21.32	LOC642072	rs2395163-?	NR	3E-11		1.24	[NR]	Illumina [2500000] (imputed)	N
612	chr6_qbl_hap6	3649146	3649147	rs2395166	33736632	Zeng Z	2021-03-18	BMC Med Genomics	Genome-wide association study identifies new loci associated with risk of HBV infection and disease progression.	Persistent hepatitis B virus infection	587 Chinese ancestry persistent cases, 275 Chinese ancestry clearance controls	NA	6p21.32	HLA-DRA	rs2395166-C	0.2182	1E-7		0.4534	NR	Affymetrix [607153]	N
612	chr6_qbl_hap6	3649146	3649147	rs2395166	28424481	Sugiura-Ogasawara M	2017-04-20	J Hum Genet	The first genome-wide association study identifying new susceptibility loci for obstetric antiphospholipid syndrome.	Obstetric antiphospholipid syndrome	115 Japanese ancestry female cases, 419 Japanese ancestry male and female controls	NA	6p21.32	HLA-DRA	rs2395166-T	0.71	3E-6		2.564103	[1.69-3.85]	Affymetrix [426344]	N
612	chr6_qbl_hap6	3649188	3649189	rs9461744	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4+ CD8dim T cell Absolute Count	3,652 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9461744-G	0.21272	7E-12		0.2434	[0.17-0.31] unit increase	Illumina [18427348] (imputed)	N
612	chr6_qbl_hap6	3649188	3649189	rs9461744	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4+ CD8dim T cell %lymphocyte	3,668 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9461744-G	0.21247	8E-19		0.3015	[0.24-0.37] unit increase	Illumina [18430788] (imputed)	N
612	chr6_qbl_hap6	3649188	3649189	rs9461744	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4+ CD8dim T cell %leukocyte	3,668 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9461744-G	0.21247	1E-16		0.2827	[0.22-0.35] unit increase	Illumina [18430788] (imputed)	N
612	chr6_qbl_hap6	3649417	3649418	rs2213581	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	6p21.32	BTNL2	rs2213581-T	0.2346	2E-11		0.002	[0.0014-0.0026] unit increase	Affymetrix [15275733] (imputed)	N
612	chr6_qbl_hap6	3650014	3650015	rs116869525	26151496	Chen PL	2015-07-07	Nat Commun	Genetic determinants of antithyroid drug-induced agranulocytosis by human leukocyte antigen genotyping and genome-wide association study.	Thionamide-induced agranulocytosis in Graves' disease	21 East Asian ancestry cases with agranulocytosis, 662 East Asian ancestry cases without agranulocytosis	21 East Asian ancestry cases with agranulocytosis, 546 East Asian ancestry cases without agranulocytosis	6p21.32	HLA-DRB1*08:03	rs116869525-T	0.083	1E-8	(trend)	4.16	[2.50-6.90] (allelic)	Affymetrix [522980]	N
612	chr6_qbl_hap6	3650126	3650127	rs3135365	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PRTN3	5,361 Icelandic ancestry individuals	NA	6p21.32		rs3135365-C	0.2736	5E-56		0.319492	[0.28-0.36] unit decrease	Illumina [7506463] (imputed)	N
612	chr6_qbl_hap6	3650126	3650127	rs3135365	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p21.32	BTNL2	rs3135365-C	0.022	9E-6		0.202	[0.11-0.29] unit increase	Affymetrix, Illumina [7374092] (imputed)	N
612	chr6_qbl_hap6	3650176	3650177	rs9268557	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.32		rs9268557-T	0.525	2E-25				Affymetrix [10369434] (imputed)	N
612	chr6_qbl_hap6	3650176	3650177	rs9268557	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.32		rs9268557-T	0.525	3E-16				Affymetrix [10369434] (imputed)	N
612	chr6_qbl_hap6	3650176	3650177	rs9268557	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.32		rs9268557-T	0.525	1E-45				Affymetrix [10369434] (imputed)	N
612	chr6_qbl_hap6	3650176	3650177	rs9268557	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	BTNL2	rs9268557-C	NR	1E-12		0.0202435	[0.015-0.026] unit increase	Affymetrix [321169] (imputed)	N
612	chr6_qbl_hap6	3650176	3650177	rs9268557	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p21.32	NR	rs9268557-?	NR	4E-15		0.0947	[0.071-0.118] unit increase	Illumina [at least 560000] (imputed)	N
612	chr6_qbl_hap6	3650176	3650177	rs9268557	26272072	Jiang X	2015-08-13	Rheumatology (Oxford)	An Immunochip-based interaction study of contrasting interaction effects with smoking in ACPA-positive versus ACPA-negative rheumatoid arthritis.	ACPA-positive rheumatoid arthritis (smoking interaction)	340 European ancestry never-smoker cases, 493 European ancestry ever-smoker cases, 746 European ancestry never-smoker controls, 994 European ancestry ever-smoker controls	187 European ancestry never-smoker cases, 421 European ancestry ever-smoker cases, 461 European ancestry never-smoker controls, 447 European ancestry ever-smoker controls	6p21.32	NR	rs9268557-?	NR	3E-10	(adjusted for HLA shared epitope)	2.5	[1.92-3.7]	Illumina [133648] (imputed)	N
612	chr6_qbl_hap6	3650262	3650263	rs9268559	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	6p21.32		rs9268559-?	NR	5E-8				Affymetrix [NR] (imputed)	N
612	chr6_qbl_hap6	3650262	3650263	rs9268559	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	6p21.32		rs9268559-G	0.023054	2E-12		0.054041814	[0.039-0.069] unit decrease	Affymetrix [93095623] (imputed)	N
612	chr6_qbl_hap6	3650262	3650263	rs9268559	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.32	NR	rs9268559-G	0.013	4E-7	(women)	0.762177	[0.47-1.05] unit increase	Affymetrix [up to 8900000] (imputed)	N
612	chr6_qbl_hap6	3650262	3650263	rs9268559	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.32	NR	rs9268559-G	0.013	2E-8		0.442409	[0.29-0.6] unit increase	Affymetrix [up to 8900000] (imputed)	N
612	chr6_qbl_hap6	3650383	3650384	rs9268560	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	BTNL2	rs9268560-C	NR	5E-17		0.023445	[0.018-0.029] unit decrease	Affymetrix [319769] (imputed)	N
612	chr6_qbl_hap6	3650383	3650384	rs9268560	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	BTNL2	rs9268560-C	NR	1E-10		0.0201058	[0.014-0.026] unit decrease	Affymetrix [323858] (imputed)	N
612	chr6_qbl_hap6	3650383	3650384	rs9268560	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	BTNL2	rs9268560-C	NR	1E-15		0.0224411	[0.017-0.028] unit decrease	Affymetrix [319769] (imputed)	N
612	chr6_qbl_hap6	3650383	3650384	rs9268560	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	BTNL2	rs9268560-C	NR	4E-9		0.0183123	[0.012-0.024] unit decrease	Affymetrix [127266] (imputed)	N
612	chr6_qbl_hap6	3650383	3650384	rs9268560	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	BTNL2	rs9268560-C	NR	3E-15		0.0220981	[0.017-0.028] unit increase	Affymetrix [321016] (imputed)	N
612	chr6_qbl_hap6	3650383	3650384	rs9268560	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	BTNL2	rs9268560-C	NR	1E-17		0.0260901	[0.02-0.032] unit increase	Affymetrix [323123] (imputed)	N
612	chr6_qbl_hap6	3650414	3650415	rs28732209	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	334,468 European ancestry, NR ancestry individuals	NA	6p21.32		rs28732209-?	NR	5E-8				Affymetrix [NR] (imputed)	N
612	chr6_qbl_hap6	3650416	3650417	rs3135364	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C4A;C4B	5,353 Icelandic ancestry individuals	NA	6p21.32		rs3135364-G	0.2232	3E-39		0.289407	[0.25-0.33] unit decrease	Illumina [7506463] (imputed)	N
612	chr6_qbl_hap6	3650416	3650417	rs3135364	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	6p21.32	NR	rs3135364-G	0.221478	4E-13		0.0590942	[0.043-0.075] unit increase	Affymetrix [17914406] (imputed)	N
612	chr6_qbl_hap6	3650519	3650520	rs3135363	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	BTNL2	rs3135363-G	NR	2E-11		0.0237256	[0.017-0.031] unit decrease	Affymetrix [323858] (imputed)	N
612	chr6_qbl_hap6	3650519	3650520	rs3135363	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	BTNL2	rs3135363-G	NR	1E-10		0.022911	[0.016-0.03] unit decrease	Affymetrix [127266] (imputed)	N
612	chr6_qbl_hap6	3650519	3650520	rs3135363	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on CD33- HLA DR+	1,635 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs3135363-G	0.17311	2E-13		0.3649	[0.27-0.46] unit increase	Illumina [16999305] (imputed)	N
612	chr6_qbl_hap6	3650519	3650520	rs3135363	24282030	Pan L	2013-11-28	Hum Mol Genet	A genome-wide association study identifies polymorphisms in the HLA-DR region associated with non-response to hepatitis B vaccination in Chinese Han populations.	Hepatitis B vaccine response	108 Han Chinese ancestry high-responder cases, 77 Han Chinese ancestry non-responder controls	1,336 Han Chinese ancestry high-responder cases, 420 Han Chinese ancestry non-responder controls	6p21.32	HLA-DR	rs3135363-?	NR	8E-7		1.51	[1.28-1.78]	Illumina [588026]	N
612	chr6_qbl_hap6	3650519	3650520	rs3135363	23321320	Urabe Y	2013-01-12	J Hepatol	A genome-wide association study of HCV-induced liver cirrhosis in the Japanese population identifies novel susceptibility loci at the MHC region.	Hepatitis C induced liver cirrhosis	682 Japanese ancestry cases, 1,045 Japanese ancestry controls	936 Japanese ancestry cases, 3,809 Japanese ancestry controls	6p21.32	intergenic	rs3135363-C	0.702	1E-10		1.37	[1.24-1.51]	Illumina [431618]	N
612	chr6_qbl_hap6	3650519	3650520	rs3135363	21764829	Png E	2011-07-15	Hum Mol Genet	A genome-wide association study of hepatitis B vaccine response in an Indonesian population reveals multiple independent risk variants in the HLA region.	Hepatitis B vaccine response	1,683 Indonesian ancestry individuals	1,931 Indonesian ancestry individuals	6p21.32	HLA-DR	rs3135363-?	NR	7E-22		1.53	[1.35-1.74]	Illumina [455508]	N
612	chr6_qbl_hap6	3651203	3651204	rs2894255	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	BTNL2	rs2894255-T	NR	2E-17		0.0362414	[0.028-0.045] unit decrease	Affymetrix [323858] (imputed)	N
612	chr6_qbl_hap6	3651203	3651204	rs2894255	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	BTNL2	rs2894255-T	NR	7E-16		0.0344273	[0.026-0.043] unit decrease	Affymetrix [127266] (imputed)	N
612	chr6_qbl_hap6	3651203	3651204	rs2894255	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p21.32	BTNL2	rs2894255-T	NR	2E-11		0.0284523	[0.02-0.037] unit decrease	Affymetrix [323858] (imputed)	N
612	chr6_qbl_hap6	3651457	3651458	rs3135359	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p21.32	HLA-DRADQA1	rs3135359-C	0.71	9E-21		1.21	[1.18-1.24]	Illumina [at least 560000] (imputed)	N
612	chr6_qbl_hap6	3653616	3653617	rs6935999	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.32	NR	rs6935999-A	0.011	8E-8	(women)	0.839311	[0.54-1.14] unit increase	Affymetrix [up to 8900000] (imputed)	N
612	chr6_qbl_hap6	3653616	3653617	rs6935999	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.32	NR	rs6935999-A	0.011	3E-11		0.563282	[0.4-0.73] unit increase	Affymetrix [up to 8900000] (imputed)	N
612	chr6_qbl_hap6	3653736	3653737	rs3135353	33941608	Khan A	2021-05-03	J Am Soc Nephrol	Medical Records-Based Genetic Studies of the Complement System.	Complement C4 levels	3,247 European ancestry individuals, 600 African ancestry individuals, 151 East Asian ancestry individuals	NA	6p21.32	C4	rs3135353-C	0.15	2E-33	(EA)	0.4	[0.34-0.45] unit increase	NR [NR] (imputed)	N
612	chr6_qbl_hap6	3653736	3653737	rs3135353	33941608	Khan A	2021-05-03	J Am Soc Nephrol	Medical Records-Based Genetic Studies of the Complement System.	Complement C4 levels	3,247 European ancestry individuals, 600 African ancestry individuals, 151 East Asian ancestry individuals	NA	6p21.32	C4	rs3135353-C	0.12	5E-35		0.4	[0.34-0.45] unit increase	NR [NR] (imputed)	N
612	chr6_qbl_hap6	3653840	3653841	rs3135350	24962563	Rubicz R	2014-07-01	Genet Epidemiol	Genome-wide genetic and transcriptomic investigation of variation in antibody response to dietary antigens.	Food antigen IgG levels	1,367 Mexican Americans from 63 families	NA	6p21.32	NOTCH4, HLA-DRA, BTNL2	rs3135350-G	0.046	9E-8	(Gliadin)	0.51	[NR] unit increase	Illumina [944565] (imputed)	N
612	chr6_qbl_hap6	3656502	3656503	rs9268576	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p21.32	HLA-DRA	rs9268576-C	0.359	2E-8		0.111	[0.072-0.15] unit decrease	Affymetrix, Illumina [7374092] (imputed)	N
612	chr6_qbl_hap6	3656502	3656503	rs9268576	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on CD33+ HLA DR+ CD14dim	1,578 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9268576-C	0.46709	3E-10		0.262	[0.18-0.34] unit decrease	Illumina [16958370] (imputed)	N
612	chr6_qbl_hap6	3656502	3656503	rs9268576	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on CD33+ HLA DR+ CD14-	1,579 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9268576-C	0.46711	3E-20		0.3825	[0.3-0.46] unit decrease	Illumina [16961968] (imputed)	N
612	chr6_qbl_hap6	3656517	3656518	rs2105903	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in diabetes	70,762 European ancestry individuals, 20,967 African American individuals	NA	6p21.32	HLA-DRA	rs2105903-A	0.838	4E-12		0.821	[0.59-1.05] unit increase	Affymetrix [NR] (imputed)	N
612	chr6_qbl_hap6	3656587	3656588	rs3129843	26362759	Rothwell S	2015-09-11	Ann Rheum Dis	Dense genotyping of immune-related loci in idiopathic inflammatory myopathies confirms HLA alleles as the strongest genetic risk factor and suggests different genetic background for major clinical subgroups.	Idiopathic inflammatory myopathy	2,556 European ancestry cases, 15,651 European ancestry controls		6p21.32	HLA	rs3129843-G	0.11	9E-133		2.74	[2.53-2.97]	Illumina [90536]	N
612	chr6_qbl_hap6	3656587	3656588	rs3129843	26362759	Rothwell S	2015-09-11	Ann Rheum Dis	Dense genotyping of immune-related loci in idiopathic inflammatory myopathies confirms HLA alleles as the strongest genetic risk factor and suggests different genetic background for major clinical subgroups.	Dermatomyositis or juvenile dermatomyositis	879 European dermatomyositis cases, 15,651 European juvenile dermatomyositis ancestry controls		6p21.32	HLA	rs3129843-G		2E-48		2.18	[1.97-2.42]	Illumina [90536]	N
612	chr6_qbl_hap6	3657006	3657007	rs78566116	29782485	Rueger S	2018-05-21	PLoS Genet	Evaluation and application of summary statistic imputation to discover new height-associated loci.	Height	253,288 European ancestry individuals	336,474 European ancestry individuals	6p21.32	intergenic	rs78566116-T	0.0766992859032002	4E-12		0.011949114	unit decrease	NR [9276018] (imputed)	N
612	chr6_qbl_hap6	3658161	3658162	rs3129849	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PRTN3	5,367 Icelandic ancestry individuals	NA	6p21.32		rs3129849-A	0.2684	2E-16		0.176044	[0.13-0.22] unit increase	Illumina [7506463] (imputed)	N
612	chr6_qbl_hap6	3658660	3658661	rs3129852	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DRA	rs3129852-G	NR	3E-8		0.019398	[0.013-0.026] unit decrease	Affymetrix [319769] (imputed)	N
612	chr6_qbl_hap6	3658739	3658740	rs17202717	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs17202717-T	0.2	9E-9		4.33	[3.31-5.67]	Illumina [NR] (imputed)	N
612	chr6_qbl_hap6	3659524	3659525	rs3129853	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Prostate cancer	7,438 White British ancestry cases, 118,206 White British ancestry controls	NA	6p21.32		rs3129853-?	NR	2E-6		0.913903	[0.88-0.95]	NR [680312]	N
612	chr6_qbl_hap6	3660060	3660061	rs4321864	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DRA	rs4321864-A	NR	1E-10		0.019351	[0.013-0.025] unit increase	Affymetrix [319769] (imputed)	N
612	chr6_qbl_hap6	3660060	3660061	rs4321864	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DRA	rs4321864-A	NR	5E-10		0.0188026	[0.013-0.025] unit increase	Affymetrix [319769] (imputed)	N
612	chr6_qbl_hap6	3660060	3660061	rs4321864	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DRA	rs4321864-A	NR	2E-11		0.0204042	[0.014-0.026] unit increase	Affymetrix [321169] (imputed)	N
612	chr6_qbl_hap6	3660060	3660061	rs4321864	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on Hematopoietic Stem Cell	1,634 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs4321864-A	0.29062	4E-9		0.2523	[0.17-0.34] unit increase	Illumina [16999215] (imputed)	N
612	chr6_qbl_hap6	3660060	3660061	rs4321864	26450422	DeLorenze GN	2015-10-08	J Infect Dis	Polymorphisms in HLA Class II Genes Are Associated With Susceptibility to Staphylococcus aureus Infection in a White Population.	Staphylococcus aureus infection	4,701 European ancestry cases, 45,344 European ancestry controls	NA	6p21.32	HLA-DRA	rs4321864-A	NR	9E-8		1.13	[NR]	Affymetrix [at least 584535] (imputed)	N
612	chr6_qbl_hap6	3661811	3661812	rs3129859	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	6p21.32	NR	rs3129859-G	0.67	1E-12		1.06	[1.04-1.08]	Illumina [20370935] (imputed)	N
612	chr6_qbl_hap6	3661811	3661812	rs3129859	28130311	Tan W	2017-01-27	Gut	Genome-wide association study identifies HLA-DR variants conferring risk of HBV-related acute-on-chronic liver failure.	Acute-on-chronic liver failure in hepatitis B	389 Chinese ancestry cases, 391 Chinese ancestry controls	901 Chinese ancestry cases,  1,686 Chinese ancestry controls	6p21.32	HLA-DQB1, HLA-DRA	rs3129859-C	0.15	7E-19		1.83	[1.60-2.09]	Affymetrix [654960]	N
612	chr6_qbl_hap6	3661908	3661909	rs17496307	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs17496307-T	0.2	9E-9		4.33	[3.31-5.67]	Illumina [NR] (imputed)	N
612	chr6_qbl_hap6	3661951	3661952	rs3129860	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CFTR	5,361 Icelandic ancestry individuals	NA	6p21.32		rs3129860-A	0.2255	1E-13		0.165583	[0.12-0.21] unit increase	Illumina [7506463] (imputed)	N
612	chr6_qbl_hap6	3661951	3661952	rs3129860	23321320	Urabe Y	2013-01-12	J Hepatol	A genome-wide association study of HCV-induced liver cirrhosis in the Japanese population identifies novel susceptibility loci at the MHC region.	Hepatitis C induced liver cirrhosis	682 Japanese ancestry cases, 1,045 Japanese ancestry controls	936 Japanese ancestry cases, 3,809 Japanese ancestry controls	6p21.32	intergenic	rs3129860-A	0.231	1E-9		1.36	[1.22-1.49]	Illumina [431618]	N
612	chr6_qbl_hap6	3662089	3662090	rs3135338	20159113	Jakkula E	2010-02-12	Am J Hum Genet	Genome-wide association study in a high-risk isolate for multiple sclerosis reveals associated variants in STAT3 gene.	Multiple sclerosis	68 Finland founder cases, 136 Finland founder controls	83 Finland founder cases, 365 Finland founder controls 3,285 European ancestry cases, 6,379 European ancestry controls, 1,202 cases, 3,399 controls	6p21.32	HLA	rs3135338-A	0.13	2E-25		3.43	[NR]	Illumina [297343]	N
612	chr6_qbl_hap6	3662135	3662136	rs9268610	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on CD33dim HLA DR+ CD11b-	1,635 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9268610-C	0.23837	2E-14		0.3692	[0.28-0.46] unit decrease	Illumina [16999305] (imputed)	N
612	chr6_qbl_hap6	3663762	3663763	rs9268615	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DRA	rs9268615-A	NR	5E-9		0.0185721	[0.012-0.025] unit decrease	Affymetrix [323123] (imputed)	N
612	chr6_qbl_hap6	3663992	3663993	rs28732213	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs28732213-A	0.041	4E-80	(Ubiquitin carboxyl-terminal hydrolase 25, USP25.9215.117.3)	1.13	[1.01-1.25] unit increase	Affymetrix [10572788] (imputed)	N
612	chr6_qbl_hap6	3665261	3665262	rs3129868	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	6p21.32	NR	rs3129868-?	NR	6E-10		0.077	[0.052-0.101] unit increase	Illumina [at least 560000] (imputed)	N
612	chr6_qbl_hap6	3666748	3666749	rs9268628	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on HLA DR+ Natural Killer	2,971 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9268628-C	0.60641	2E-23		0.2999	[0.24-0.36] unit decrease	Illumina [17967059] (imputed)	N
612	chr6_qbl_hap6	3667210	3667211	rs3129871	23472185	Mero IL	2013-03-05	PLoS One	Oligoclonal band status in Scandinavian multiple sclerosis patients is associated with specific genetic risk alleles.	Multiple sclerosis (OCB status)	1,367 European ancestry OCB positive cases, 161 European ancestry OCB negative cases, 428 European ancestry controls	NA	6p21.32	HLA-DRA	rs3129871-?	NR	1E-16	(OCB positive vs. controls)	1.98	[1.68-2.32]	Illumina [495970]	N
612	chr6_qbl_hap6	3667210	3667211	rs3129871	23472185	Mero IL	2013-03-05	PLoS One	Oligoclonal band status in Scandinavian multiple sclerosis patients is associated with specific genetic risk alleles.	Multiple sclerosis (OCB status)	1,367 European ancestry OCB positive cases, 161 European ancestry OCB negative cases	3,029 European ancestry OCB positive cases, 374 European ancestry OCB negative cases	6p21.32	HLA-DRA	rs3129871-?	NR	6E-15		1.72	[1.59-1.86]	Illumina [495970]	N
612	chr6_qbl_hap6	3667341	3667342	rs9268633	33143745	Andlauer TFM	2020-11-04	BMC Med	Treatment- and population-specific genetic risk factors for anti-drug antibodies against interferon-beta: a GWAS.	Neutralising antibody response to interferon beta therapy in multiple sclerosis (antibody titre; IFN?-1a subcutaneous and intramuscular)	up to 2,000 German and Swedish ancestry individuals	up to 757 German and Swedish ancestry individuals	6p21.32		rs9268633-A	0.39	1E-17		0.2	[-0.0392-0.0392] unit increase	Illumina [8550834] (imputed)	N
612	chr6_qbl_hap6	3668169	3668170	rs2395179	29534301	Nishida N	2018-03-13	Hepatology	Key HLA-DRB1-DQB1 haplotypes and role of the BTNL2 gene for response to a hepatitis B vaccine.	Response to hepatitis B vaccine	107 Japanese ancestry low responder individuals, 351 Japanese ancestry intermediate responder individuals, 735 Japanese ancestry high responder individuals	NA	6p21.32	HLA-DRA	rs2395179-?		5E-14		0.221	unit decrease	Affymetrix [427664]	N
612	chr6_qbl_hap6	3668911	3668912	rs9268644	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DRA	rs9268644-A	NR	4E-13		0.022277	[0.016-0.028] unit increase	Affymetrix [323123] (imputed)	N
612	chr6_qbl_hap6	3668911	3668912	rs9268644	28425483	Qiu F	2017-04-20	Nat Commun	A genome-wide association study identifies six novel risk loci for primary biliary cholangitis.	Primary biliary cholangitis	1,122 Han Chinese ancestry cases, 4,036 Han Chinese ancestry controls	907 Han Chinese ancestry cases, 2,127 Han Chinese ancestry controls	6p21.32	HLA-DRA	rs9268644-?	0.823	8E-31		1.9607843	[1.75-2.22]	Illumina [776516]	N
612	chr6_qbl_hap6	3669362	3669363	rs3135394	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p21.32	HLA-DRA	rs3135394-G	0.344	3E-33				Illumina [118177]	N
612	chr6_qbl_hap6	3669362	3669363	rs3135394	24097067	Lessard CJ	2013-11-01	Nat Genet	Variants at multiple loci implicated in both innate and adaptive immune responses are associated with Sjogren's syndrome.	Sjogren's syndrome	395 European ancestry cases, 1,975 European ancestry controls	1,243 European ancestry cases, 4,779 European ancestry controls	6p21.32	HLA-DRA	rs3135394-G	0.11	5E-113		3.52	[3.02-4.10]	Illumina [648937]	N
612	chr6_qbl_hap6	3669362	3669363	rs3135394	19838195	Gateva V	2009-11-01	Nat Genet	A large-scale replication study identifies TNIP1, PRDM1, JAZF1, UHRF1BP1 and IL10 as risk loci for systemic lupus erythematosus.	Systemic lupus erythematosus	1,310 European ancestry cases, 7,859 European ancestry controls	1,963 European ancestry cases, 4,329 European ancestry controls	6p21.32	HLA-DRB1	rs3135394-G	0.1	2E-60		1.98	[1.84-2.14]	Illumina [~ 2100000] (imputed)	N
612	chr6_qbl_hap6	3669392	3669393	rs9268645	19430480	Barrett JC	2009-05-10	Nat Genet	Genome-wide association study and meta-analysis find that over 40 loci affect risk of type 1 diabetes.	Type 1 diabetes	7,514 European ancestry cases, 9,045 European ancestry controls	4,267 European ancestry cases, 4,670 European ancestry controls, 4,342 European ancestry trios from 2,319 families	6p21.32	MHC	rs9268645-?	NR	1E-100				Affymetrix, Illumina [841622] (imputed)	N
612	chr6_qbl_hap6	3669772	3669773	rs3129879	34212547	An J	2021-07-01	Allergy Asthma Immunol Res	Genome-Wide Association Study of Korean Asthmatics: A Comparison With UK Asthmatics.	Adult asthma	1,386 Korean ancestry cases, 5,205 Korean ancestry controls	NA	6p21.32		rs3129879-A	0.34	3E-6		0.78	[0.71-0.87]	Affymetrix [4922160] (imputed)	N
612	chr6_qbl_hap6	3669921	3669922	rs9268652	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Hepatitis B	1,425 European ancestry cases, 218,180 European ancestry controls	NA	6p21.32	HLA-DRA	rs9268652-G	0.74	3E-9		1.32	[1.25-1.38]	Illumina [at least 560000] (imputed)	N
613	chr6_qbl_hap6	3670395	3670396	rs3129882	24511991	Hill-Burns EM	2014-02-10	BMC Genomics	Identification of a novel Parkinson's disease locus via stratified genome-wide association study.	Parkinson's disease	1,565 European ancestry sproadic Parkinson's disease cases, 435 European ancestry familial Parkinson's disease cases, 1,986 European ancestry controls	1,528 European ancestry sporadic Parkinson's disease cases, 707 European ancestry familial Parkinson's disease cases, 796 European ancestry controls	6p21.32	HLA	rs3129882-G	0.395	5E-10	(Sporadic)	1.38	[1.24-1.52]	Illumina [811597]	N
613	chr6_qbl_hap6	3670395	3670396	rs3129882	24511991	Hill-Burns EM	2014-02-10	BMC Genomics	Identification of a novel Parkinson's disease locus via stratified genome-wide association study.	Parkinson's disease	1,565 European ancestry sproadic Parkinson's disease cases, 435 European ancestry familial Parkinson's disease cases, 1,986 European ancestry controls	1,528 European ancestry sporadic Parkinson's disease cases, 707 European ancestry familial Parkinson's disease cases, 796 European ancestry controls	6p21.32	HLA	rs3129882-G	0.395	3E-8		1.31	[1.19-1.43]	Illumina [811597]	N
613	chr6_qbl_hap6	3670395	3670396	rs3129882	21779181	Gorlova O	2011-07-14	PLoS Genet	Identification of novel genetic markers associated with clinical phenotypes of systemic sclerosis through a genome-wide association strategy.	Systemic sclerosis	2,296 European ancestry cases, 5,172 European ancestry controls	3,175 European ancestry cases, 4,210 European ancestry controls	6p21.32	HLA-DRA	rs3129882-?	0.44	2E-27	(ATA positive)	2.17	[1.88-2.50]	Illumina [NR] (imputed)	N
613	chr6_qbl_hap6	3670395	3670396	rs3129882	20711177	Hamza TH	2010-08-15	Nat Genet	Common genetic variation in the HLA region is associated with late-onset sporadic Parkinson's disease.	Parkinson's disease	2,000 European ancestry cases, 1,986 European ancestry controls	Up to 1,447 cases, 1,468 controls	6p21.32	HLA-DRA	rs3129882-G	0.40	2E-10		1.26	[1.17-1.35]	Illumina [811597]	N
613	chr6_qbl_hap6	3670573	3670574	rs17496549	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs17496549-T	0.2	9E-9		4.33	[3.31-5.67]	Illumina [NR] (imputed)	N
613	chr6_qbl_hap6	3671441	3671442	rs3129886	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Matrix metalloproteinase-10 levels	21,758 European ancestry individuals	9,173 individuals	6p21.32		rs3129886-T	0.25	6E-7		0.0572	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
613	chr6_qbl_hap6	3671556	3671557	rs3129887	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DRA	rs3129887-A	NR	4E-11		0.0236955	[0.017-0.031] unit decrease	Affymetrix [319769] (imputed)	N
613	chr6_qbl_hap6	3671556	3671557	rs3129887	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DRA	rs3129887-A	NR	2E-10		0.0226864	[0.016-0.03] unit decrease	Affymetrix [319769] (imputed)	N
613	chr6_qbl_hap6	3671556	3671557	rs3129887	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DRA	rs3129887-A	NR	2E-12		0.0256	[0.019-0.033] unit decrease	Affymetrix [321169] (imputed)	N
613	chr6_qbl_hap6	3671556	3671557	rs3129887	28062665	Kawashima M	2017-01-05	Hum Mol Genet	Genome-wide association studies identify PRKCB as a novel genetic susceptibility locus for primary biliary cholangitis in the Japanese population.	Primary biliary cholangitis	1,381 Japanese ancestry cases, 1,505 Japanese ancestry controls	512 Japanese ancestry cases, 6,512 Japanese ancestry controls	6p21.32	HLA-DRA, HLA-DRB1	rs3129887-?	NR	2E-29		3.13	[2.54-3.85]	Affymetrix [425290]	N
613	chr6_qbl_hap6	3671806	3671807	rs9268659	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	HLA-DRA	rs9268659-T	NR	2E-9		0.0171616	[0.012-0.023] unit decrease	Affymetrix [321114] (imputed)	N
613	chr6_qbl_hap6	3671806	3671807	rs9268659	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Perceived unattractiveness to mosquitoes	16,576 European ancestry individuals	NA	6p21.32	HLA-DRA	rs9268659-T	0.42	2E-9		0.139734	[0.094-0.186] unit increase	Illumina [7433384] (imputed)	N
613	chr6_qbl_hap6	3671900	3671901	rs8084	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DRA	rs8084-A	NR	3E-21		0.027016	[0.021-0.033] unit decrease	Affymetrix [321169] (imputed)	N
613	chr6_qbl_hap6	3672241	3672242	rs2239805	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.32	HLA-DRA, HLA-DRB9	rs2239805-G	0.169007	1E-12	(EA, Complement C4)	0.4079	[0.3-0.52] unit decrease	Affymetrix [509946]	N
613	chr6_qbl_hap6	3672511	3672512	rs7192	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs7192-T	0.49	3E-9		0.15	[0.11-0.22]	Illumina [NR] (imputed)	N
613	chr6_qbl_hap6	3672511	3672512	rs7192	22541561	Zhao H	2012-04-26	Am J Hum Genet	A genome-wide association study reveals that variants within the HLA region are associated with risk for nonobstructive azoospermia.	Non-obstructive azoospermia	802 Han Chinese ancestry cases, 1,863 Han Chinese ancestry controls	1,424 Han Chinese ancestry cases, 2,713 Han Chinese ancestry controls	6p21.32	HLA-DRA	rs7192-T	0.26	3E-6		1.29	[NR]	Affymetrix, Illumina [912924]	N
613	chr6_qbl_hap6	3672711	3672712	rs2239802	28008999	Ostrowski J	2016-12-23	Sci Rep	Genetic architecture differences between pediatric and adult-onset inflammatory bowel diseases in the Polish population.	Ulcerative colitis	269 Polish ancestry child cases, 259 Polish ancestry adult cases, 582 Polish ancestry controls	121 Polish ancestry child cases, 85 Polish ancestry adult cases, 352 Polish ancestry controls	6p21.32	HLA-DRA	rs2239802-?		2E-7	(Adults)	1.7715251	[1.43-2.19]	Illumina [2612357]	N
613	chr6_qbl_hap6	3673261	3673262	rs4935356	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	6p21.32	HLA-DRA	rs4935356-T	0.756088	8E-22		0.0245501	[0.02-0.03] unit decrease	Affymetrix [NR] (imputed)	N
613	chr6_qbl_hap6	3673268	3673269	rs3135390	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DRA	rs3135390-C	NR	6E-9		0.0224213	[0.015-0.03] unit increase	Affymetrix [323123] (imputed)	N
613	chr6_qbl_hap6	3673308	3673309	rs3177928	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs3177928-A	0.21	2E-8		4.13	[3.16-5.38]	Illumina [NR] (imputed)	N
613	chr6_qbl_hap6	3673308	3673309	rs3177928	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.32	NR	rs3177928-G	NR	1E-9		0.033	unit decrease	Affymetrix [at least 7091467] (imputed)	N
613	chr6_qbl_hap6	3673308	3673309	rs3177928	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.32	NR	rs3177928-G	0.856	5E-7	(EA)	0.03	unit decrease	Affymetrix [at least 7091467] (imputed)	N
613	chr6_qbl_hap6	3673308	3673309	rs3177928	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.32	NR	rs3177928-G	NR	1E-15		0.049	unit decrease	Affymetrix [at least 7091467] (imputed)	N
613	chr6_qbl_hap6	3673308	3673309	rs3177928	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.32	NR	rs3177928-G	0.856	5E-12	(EA)	0.045	unit decrease	Affymetrix [at least 7091467] (imputed)	N
613	chr6_qbl_hap6	3673308	3673309	rs3177928	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.32	NR	rs3177928-G	NR	9E-10		0.038	unit decrease	Affymetrix [at least 7091467] (imputed)	N
613	chr6_qbl_hap6	3673308	3673309	rs3177928	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.32	NR	rs3177928-G	0.856	2E-7	(EA)	0.035	unit decrease	Affymetrix [at least 7091467] (imputed)	N
613	chr6_qbl_hap6	3673308	3673309	rs3177928	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Total cholesterol levels	32,576 East Asian ancestry individuals, 187,365 European ancestry individuals	10,855 Chinese ancestry individuals	6p21.32	HLA	rs3177928-A	0.181	5E-22	(Trans-ethnic initial)	0.0482	[0.038-0.058] unit increase (EA Beta values)	Affymetrix, Illumina [up to 1900000] (imputed)	N
613	chr6_qbl_hap6	3673308	3673309	rs3177928	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	LDL cholesterol levels	32,285 East Asian ancestry individuals, 173,082 European ancestry individuals	8,478 Chinese ancestry individuals	6p21.32	HLA	rs3177928-A	0.181	5E-17	(Trans-ethnic initial)	0.0452	[0.035-0.055] unit increase (EA Beta value)	Affymetrix, Illumina [~ 1900000] (imputed)	N
613	chr6_qbl_hap6	3673308	3673309	rs3177928	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	6p21.32	HLA	rs3177928-A	0.17	3E-17		0.045	[NR] unit increase	NR [NR] (imputed)	N
613	chr6_qbl_hap6	3673308	3673309	rs3177928	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	6p21.32	HLA	rs3177928-A	0.17	1E-21		0.048	[NR] unit increase	NR [NR] (imputed)	N
613	chr6_qbl_hap6	3673308	3673309	rs3177928	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	LDL cholesterol	95,454 European ancestry individuals	NA	6p21.32	HLA	rs3177928-A	0.16	2E-15		1.83	[1.36-2.3] mg/dL increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
613	chr6_qbl_hap6	3673308	3673309	rs3177928	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	Cholesterol, total	100,184 European ancestry individuals	NA	6p21.32	HLA	rs3177928-A	0.16	4E-19		2.31	[1.78-2.84] mg/dL increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
613	chr6_qbl_hap6	3673353	3673354	rs7194	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.32	HLA-DRA	rs7194-A	0.5927	6E-9		0.0221	[0.015-0.03] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
613	chr6_qbl_hap6	3673353	3673354	rs7194	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6p21.32	BTNL2	rs7194-A	0.5927	5E-8		0.0247	[0.016-0.034] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
613	chr6_qbl_hap6	3673353	3673354	rs7194	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.32	HLA-DRA	rs7194-?	0.5927	1E-7				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
613	chr6_qbl_hap6	3673412	3673413	rs7195	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs7195-A	0.49	3E-9		0.15	[0.11-0.22]	Illumina [NR] (imputed)	N
613	chr6_qbl_hap6	3673465	3673466	rs1051336	29857070	Gao J	2018-05-29	J Invest Dermatol	Association study and fine-mapping major histocompatibility complex analysis of pemphigus vulgaris in a Han Chinese population.	Pemphigus vulgaris	240 Han Chinese ancestry cases, 1,031 Han Chinese ancestry controls	252 Han Chinese ancestry cases, 1,852 Han Chinese ancestry controls	6p21.32	NR	rs1051336-?	NR	3E-6	(conditioned on HLA-DRB1*14:04 and rs7454108)	3.03	[NR]	Illumina [802980]	N
613	chr6_qbl_hap6	3673924	3673925	rs3135388	19525953	De Jager PL	2009-06-14	Nat Genet	Meta-analysis of genome scans and replication identify CD6, IRF8 and TNFRSF1A as new multiple sclerosis susceptibility loci.	Multiple sclerosis	2,624 European ancestry cases, 7,220 European ancestry controls	2,215 European ancestry cases, 2,116 European ancestry controls		HLA-DRB1	rs3135388-A	0.22	4E-225		2.75	[2.46-3.07]	Affymetrix, Illumina [~ 2560000] (imputed)	N
613	chr6_qbl_hap6	3673924	3673925	rs3135388	17660530	Hafler DA	2007-07-29	N Engl J Med	Risk alleles for multiple sclerosis identified by a genomewide study.	Multiple sclerosis	931 European ancestry trios, 2,431 European ancestry controls	609 European ancestry trios, 2,322 European ancestry cases, 2,987 European ancestry controls		HLA-DRA	rs3135388-A	0.23	9E-81		1.99	[1.84-2.15]	Affymetrix [334923]	N
613	chr6_qbl_hap6	3673967	3673968	rs2213586	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs2213586-A	0.49	3E-9		0.15	[0.11-0.22]	Illumina [NR] (imputed)	N
613	chr6_qbl_hap6	3674023	3674024	rs2213585	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs2213585-G	0.48	3E-9		0.15	[0.11-0.22]	Illumina [NR] (imputed)	N
613	chr6_qbl_hap6	3674332	3674333	rs2227139	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs2227139-G	0.49	3E-9		0.15	[0.11-0.22]	Illumina [NR] (imputed)	N
613	chr6_qbl_hap6	3674332	3674333	rs2227139	19820697	Soranzo N	2009-10-11	Nat Genet	A genome-wide meta-analysis identifies 22 loci associated with eight hematological parameters in the HaemGen consortium.	Hematological parameters	4,627 European ancestry individuals	9,316 European ancestry individuals	6p21.32	intergenic	rs2227139-G	NR	1E-7	(WBC)	0.02	[0.01-0.03] 10^9/l increase	Affymetrix, Illumina [~ 2110000] (imputed)	N
613	chr6_qbl_hap6	3674418	3674419	rs3129889	22190364	Patsopoulos NA	2011-12-01	Ann Neurol	Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.	Multiple sclerosis	5,545 European ancestry cases, 12,153 European ancestry controls	NA	6p21.32	HLA-DRB1	rs3129889-G	0.20	1E-206		2.97	[NR]	Affymetrix, Illumina [2529394]	N
613	chr6_qbl_hap6	3674430	3674431	rs3763326	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (mother's age at death or mother's attained age)	up to 699,000 individuals	NA	6p21.32	NR	rs3763326-A		5E-6				Illumina [458525]	N
613	chr6_qbl_hap6	3674703	3674704	rs3763327	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs3763327-G	0.49	3E-9		0.15	[0.11-0.22]	Illumina [NR] (imputed)	N
613	chr6_qbl_hap6	3675145	3675146	rs3129890	26272072	Jiang X	2015-08-13	Rheumatology (Oxford)	An Immunochip-based interaction study of contrasting interaction effects with smoking in ACPA-positive versus ACPA-negative rheumatoid arthritis.	ACPA-positive rheumatoid arthritis (smoking interaction)	340 European ancestry never-smoker cases, 493 European ancestry ever-smoker cases, 746 European ancestry never-smoker controls, 994 European ancestry ever-smoker controls	187 European ancestry never-smoker cases, 421 European ancestry ever-smoker cases, 461 European ancestry never-smoker controls, 447 European ancestry ever-smoker controls	6p21.32	NR	rs3129890-?	NR	1E-10	(adjusted for HLA shared epitope)	2.5	[1.89-3.57]	Illumina [133648] (imputed)	N
613	chr6_qbl_hap6	3675145	3675146	rs3129890	21804548	Hirota T	2011-07-31	Nat Genet	Genome-wide association study identifies three new susceptibility loci for adult asthma in the Japanese population.	Asthma	1,532 Japanese ancestry cases, 3,304 Japanese ancestry controls	5,639 Japanese ancestry cases, 24,608 Japanese ancestry controls	6p21.32	HLA-DRA	rs3129890-T	0.61	5E-13		1.15	[1.11-1.20]	Illumina [458847]	N
613	chr6_qbl_hap6	3675159	3675160	rs9268670	33768542	Liu Y	2021-03-26	Clin Pharmacol Ther	Class II HLA Variants Associate with Risk of Pegaspargase Hypersensitivity.	Asparaginase hypersensitivity in acute lymphoblastic leukemia	310 African ancestry individuals, 798 Native American individuals, 387 individuals	NA	6p21.32	NR	rs9268670-T	NR	7E-7		0.56	[NR]	Illumina [NR] (imputed)	N
613	chr6_qbl_hap6	3675159	3675160	rs9268670	33768542	Liu Y	2021-03-26	Clin Pharmacol Ther	Class II HLA Variants Associate with Risk of Pegaspargase Hypersensitivity.	Asparaginase hypersensitivity in acute lymphoblastic leukemia	310 African ancestry individuals, 798 Native American individuals, 112 Asian ancestry individuals, 387 individuals	NA	6p21.32	HLA-DRA	rs9268670-T	NR	2E-7		0.55		Illumina [NR] (imputed)	N
613	chr6_qbl_hap6	3675162	3675163	rs9268671	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs9268671-A	0.339438	4E-8		0.023014	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
613	chr6_qbl_hap6	3675162	3675163	rs9268671	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DRA	rs9268671-A	NR	4E-19		0.0265032	[0.021-0.032] unit decrease	Affymetrix [319769] (imputed)	N
613	chr6_qbl_hap6	3675162	3675163	rs9268671	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DRA	rs9268671-A	NR	1E-12		0.0233694	[0.017-0.03] unit decrease	Affymetrix [323858] (imputed)	N
613	chr6_qbl_hap6	3675162	3675163	rs9268671	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DRA	rs9268671-A	NR	5E-18		0.0256545	[0.02-0.031] unit decrease	Affymetrix [319769] (imputed)	N
613	chr6_qbl_hap6	3675162	3675163	rs9268671	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	HLA-DRA	rs9268671-A	NR	4E-11		0.0217286	[0.015-0.028] unit decrease	Affymetrix [127266] (imputed)	N
613	chr6_qbl_hap6	3675162	3675163	rs9268671	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DRA	rs9268671-A	NR	2E-11		0.0199636	[0.014-0.026] unit increase	Affymetrix [321016] (imputed)	N
613	chr6_qbl_hap6	3675162	3675163	rs9268671	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DRA	rs9268671-A	NR	3E-22		0.0312717	[0.025-0.038] unit increase	Affymetrix [323123] (imputed)	N
613	chr6_qbl_hap6	3675162	3675163	rs9268671	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	6p21.32	HLA-DRA	rs9268671-G	0.661005	1E-11		0.018096138	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
613	chr6_qbl_hap6	3675541	3675542	rs9268677	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DRA	rs9268677-A	NR	4E-15		0.0222453	[0.017-0.028] unit increase	Affymetrix [319769] (imputed)	N
613	chr6_qbl_hap6	3675541	3675542	rs9268677	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DRA	rs9268677-A	NR	1E-14		0.0218771	[0.016-0.027] unit increase	Affymetrix [319769] (imputed)	N
613	chr6_qbl_hap6	3675958	3675959	rs3129891	26272072	Jiang X	2015-08-13	Rheumatology (Oxford)	An Immunochip-based interaction study of contrasting interaction effects with smoking in ACPA-positive versus ACPA-negative rheumatoid arthritis.	ACPA-positive rheumatoid arthritis (smoking interaction)	340 European ancestry never-smoker cases, 493 European ancestry ever-smoker cases, 746 European ancestry never-smoker controls, 994 European ancestry ever-smoker controls	187 European ancestry never-smoker cases, 421 European ancestry ever-smoker cases, 461 European ancestry never-smoker controls, 447 European ancestry ever-smoker controls	6p21.32	NR	rs3129891-?	NR	2E-9	(adjusted for HLA shared epitope)	2.5	[1.89-3.7]	Illumina [133648] (imputed)	N
613	chr6_qbl_hap6	3676031	3676032	rs9469112	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	6p21.32	HLA-DRA	rs9469112-T	0.1734	1E-10		6.4424515	NR z-unit increase	Affymetrix, Illumina [up to 10847151] (imputed)	N
613	chr6_qbl_hap6	3676089	3676090	rs28895028	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs28895028-A	0.21	2E-8		4.13	[3.16-5.38]	Illumina [NR] (imputed)	N
613	chr6_qbl_hap6	3676736	3676737	rs12529093	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs12529093-G	0.21	2E-8		4.13	[3.16-5.38]	Illumina [NR] (imputed)	N
613	chr6_qbl_hap6	3676853	3676854	rs13209234	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs13209234-A	0.21	2E-8		4.13	[3.16-5.38]	Illumina [NR] (imputed)	N
613	chr6_qbl_hap6	3676958	3676959	rs13209059	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs13209059-G	0.21	2E-8		4.13	[3.16-5.38]	Illumina [NR] (imputed)	N
613	chr6_qbl_hap6	3678140	3678141	rs28895057	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs28895057-G	0.098	1E-15	(Ubiquitin carboxyl-terminal hydrolase 25, USP25.9215.117.3)	0.39	[0.29-0.49] unit increase	Affymetrix [10572788] (imputed)	N
613	chr6_qbl_hap6	3678684	3678685	rs6937167	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.32	NR	rs6937167-AT	0.01	3E-9	(women)	1.02959	[0.7-1.36] unit increase	Affymetrix [up to 8900000] (imputed)	N
613	chr6_qbl_hap6	3678921	3678922	rs6937545	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DRA	rs6937545-A	NR	3E-16		0.0268745	[0.02-0.033] unit decrease	Affymetrix [323858] (imputed)	N
613	chr6_qbl_hap6	3678921	3678922	rs6937545	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	HLA-DRA	rs6937545-A	NR	4E-14		0.0248417	[0.018-0.031] unit decrease	Affymetrix [127266] (imputed)	N
613	chr6_qbl_hap6	3680166	3680166	rs202087577	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	6p21.32	Intergenic	rs202087577-?	NR	3E-21		0.0536425	[0.043-0.065] unit increase	Illumina [13520550] (imputed)	N
613	chr6_qbl_hap6	3680358	3680359	rs28895103	33649182	Penova M	2021-03-01	Proc Natl Acad Sci U S A	Genome wide association study of HTLV-1-associated myelopathy/tropical spastic paraparesis in the Japanese population.	HTLV-1 associated myelopathy	731 Japanese ancestry cases, 846 Japanese ancestry controls	NA	6p21.32		rs28895103-G	0.95	1E-8		0.44	[0.33-0.58]	Illumina [126394]	N
613	chr6_qbl_hap6	3680853	3680854	rs3135384	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	Systemic lupus erythematosus	1,639 East Asian ancestry cases, 2,410 East Asian ancestry controls	NA			rs3135384-G	NR	7E-26		0.5329	[0.43-0.63] unit decrease	Illumina [NR] (imputed)	N
613	chr6_qbl_hap6	3681073	3681074	rs7754768	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs7754768-C	0.49	7E-10		0.14	[0.10-0.20]	Illumina [NR] (imputed)	N
613	chr6_qbl_hap6	3681093	3681094	rs9268775	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	6p21.32	HLA-DRA	rs9268775-T	0.0541	3E-6		0.0884	[0.052-0.125] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
613	chr6_qbl_hap6	3681391	3681392	rs9268781	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DRB9	rs9268781-T	NR	5E-17		0.0247953	[0.019-0.031] unit increase	Affymetrix [321016] (imputed)	N
613	chr6_qbl_hap6	3681749	3681750	rs9268786	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	6p21.32		rs9268786-C	NR	3E-28		0.0241	[0.02-0.028] unit increase	Affymetrix, Illumina [20529698] (imputed)	N
613	chr6_qbl_hap6	3681837	3681838	rs111255178	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.32	HLA-DRB9	rs111255178-T	0.1435	3E-6		0.0558	[0.032-0.079] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
613	chr6_qbl_hap6	3681967	3681968	rs9268791	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD25 on CD28+ CD4+ T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9268791-C	0.74777	1E-10		0.2077	[0.14-0.27] unit decrease	Illumina [17954496] (imputed)	N
613	chr6_qbl_hap6	3682363	3682364	rs3129897	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	HLA-DRB9	rs3129897-A	0.156	2E-29	(Interleukin-21, IL21.7124.18.3)	0.37	[0.31-0.43] unit decrease	Affymetrix [10572788] (imputed)	N
613	chr6_qbl_hap6	3682398	3682399	rs28895136	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs28895136-C	0.21	2E-8		4.13	[3.16-5.38]	Illumina [NR] (imputed)	N
613	chr6_qbl_hap6	3683085	3683086	rs2097442	34642315	Ferreiro-Iglesias A	2021-10-12	Nat Commun	Germline determinants of humoral immune response to HPV-16 protect against oropharyngeal cancer.	Oropharynx cancer and human papilloma virus 16 negative oropharyngeal cancer	2,359 European ancestry cases, 565 European ancestry controls	NA	6p21.32		rs2097442-A	NR	1E-6		1.2355		Illumina [up to 7574753] (imputed)	N
613	chr6_qbl_hap6	3683085	3683086	rs2097442	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Non-Hodgkin's lymphoma	2,400 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs2097442-A	NR	3E-19		1.3187393	NR	Affymetrix [7846216] (imputed)	N
613	chr6_qbl_hap6	3684412	3684413	rs140302846	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	6p21.32	NR	rs140302846-?	NR	1E-15				Affymetrix [~ 8270000] (imputed)	N
613	chr6_qbl_hap6	3684412	3684413	rs140302846	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs140302846-?	NR	7E-13				Affymetrix [~ 8270000] (imputed)	N
613	chr6_qbl_hap6	3684818	3684819	rs9268807	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	HLA	rs9268807-C	0.208	5E-117		1.604	[1.56-1.65]	Illumina [11270530] (imputed)	N
613	chr6_qbl_hap6	3684934	3684935	rs13220657	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs13220657-T	0.21	2E-8		4.13	[3.16-5.38]	Illumina [NR] (imputed)	N
613	chr6_qbl_hap6	3685273	3685274	rs9268811	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DRB9	rs9268811-T	NR	1E-14		0.0222291	[0.017-0.028] unit increase	Affymetrix [321169] (imputed)	N
613	chr6_qbl_hap6	3685497	3685498	rs9268813	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	6p21.32	NR	rs9268813-?	NR	8E-14				Affymetrix [~ 8270000] (imputed)	N
613	chr6_qbl_hap6	3685497	3685498	rs9268813	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.32	NR	rs9268813-?	NR	8E-15				Affymetrix [~ 8270000] (imputed)	N
613	chr6_qbl_hap6	3685497	3685498	rs9268813	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs9268813-?	NR	1E-17				Affymetrix [~ 8270000] (imputed)	N
613	chr6_qbl_hap6	3685785	3685786	rs7763262	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	6p21.32	HLA-DQB1, HLA-DQA1, HLA-DRB1	rs7763262-C	0.72	1E-10	(East Asian)	1.3	[NR]	Illumina [> 1000000] (imputed)	N
613	chr6_qbl_hap6	3685785	3685786	rs7763262	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	6p21.32	HLA-DQB1, HLA-DQA1, HLA-DRB1	rs7763262-C	0.69	2E-38		1.41	[NR]	Illumina [> 1000000] (imputed)	N
613	chr6_qbl_hap6	3685785	3685786	rs7763262	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	6p21.32	HLA-DQB1, HLA-DQA1, HLA-DRB1	rs7763262-C	0.69	1E-30	(EA)	1.49	[NR]	Illumina [> 1000000] (imputed)	N
613	chr6_qbl_hap6	3686208	3686209	rs28895205	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs28895205-G	0.21	2E-8		4.13	[3.16-5.38]	Illumina [NR] (imputed)	N
613	chr6_qbl_hap6	3686391	3686392	rs7744304	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DRB9	rs7744304-G	NR	9E-27		0.0345924	[0.028-0.041] unit increase	Affymetrix [323123] (imputed)	N
613	chr6_qbl_hap6	3686666	3686667	rs41291794	27927641	Ombrello MJ	2016-12-07	Ann Rheum Dis	Genetic architecture distinguishes systemic juvenile idiopathic arthritis from other forms of juvenile idiopathic arthritis: clinical and therapeutic implications.	Systemic juvenile idiopathic arthritis	178 European ancestry cases, 434 European ancestry controls, 81 Hispanic/Latin American cases, 177 Hispanic/Latin American controls, 511 cases, 6,336 controls	NA	6p21.32	HLA-DRA	rs41291794-?		4E-15	(Additive)	2.1	[1.80-2.60]	Illumina [5600610] (imputed)	N
613	chr6_qbl_hap6	3686887	3686888	rs6457592	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DRB9	rs6457592-C	NR	2E-10		0.0179035	[0.012-0.023] unit decrease	Affymetrix [321016] (imputed)	N
613	chr6_qbl_hap6	3687909	3687910	rs113164910	27668658	Iotchkova V	2016-11-01	Nat Genet	Discovery and refinement of genetic loci associated with cardiometabolic risk using dense imputation maps.	Cardiometabolic and hematological traits	up to 35,981 European ancestry individuals	up to 102,505 European ancestry individuals	6p21.32	HLA-DRA	rs113164910-AAC		4E-54	(WBC)	0.008	[0.008-0.008] unit increase	Affymetrix, Illumina [17000000] (imputed)	N
613	chr6_qbl_hap6	3687910	3687910	rs5875374	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	6p21.32	HLA-DRB9	rs5875374-AAC	0.6671	2E-39		0.04909979	[0.042-0.056] unit increase	Affymetrix [~ 2500000] (imputed)	N
613	chr6_qbl_hap6	3688005	3688006	rs1547422	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD45 on CD4+ T cell	3,113 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs1547422-G	0.77074	1E-9		0.204	[0.14-0.27] unit decrease	Illumina [18030777] (imputed)	N
613	chr6_qbl_hap6	3688085	3688086	rs1548306	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycoprotein acetyls levels	115,082 European ancestry individuals	NA	6p21.32		rs1548306-A	0.337505	3E-30		0.0494261	[0.041-0.058] unit decrease	NR [11722792] (imputed)	N
613	chr6_qbl_hap6	3688085	3688086	rs1548306	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA	6p21.32	NR	rs1548306-?	NR	9E-7		0.0374	[0.023-0.052] unit increase	Illumina [at least 560000] (imputed)	N
613	chr6_qbl_hap6	3688085	3688086	rs1548306	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	6p21.32	Intergenic	rs1548306-T	NR	6E-10		0.0234279	[0.016-0.031] unit decrease	Illumina [13519193] (imputed)	N
613	chr6_qbl_hap6	3688085	3688086	rs1548306	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.32	Intergenic	rs1548306-T	NR	1E-11	(women)	0.0332253	[0.024-0.043] unit decrease	Illumina [13520550] (imputed)	N
613	chr6_qbl_hap6	3688085	3688086	rs1548306	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.32	HLA-DRA, HLA-DRB5	rs1548306-T	0.634	9E-14		0.0256004	[0.019-0.032] unit decrease	Illumina [13520550] (imputed)	N
613	chr6_qbl_hap6	3688085	3688086	rs1548306	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	6p21.32	HLA-DRA, HLA-DRB5	rs1548306-T	0.634	5E-29		0.0446701	[0.037-0.052] unit decrease	Illumina [13520550] (imputed)	N
613	chr6_qbl_hap6	3688287	3688288	rs28732229	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs28732229-T	0.21	2E-8		4.13	[3.16-5.38]	Illumina [NR] (imputed)	N
613	chr6_qbl_hap6	3688654	3688655	rs9268831	33558538	Gebresilase T	2021-02-08	Sci Rep	Replication of HLA class II locus association with susceptibility to podoconiosis in three Ethiopian ethnic groups.	Podoconiosis	1,137 Ethiopian ancestry cases, 1,152 Ethiopian ancestry controls	NA	6p21.32	HLA-DRB9	rs9268831-T	0.46	2E-9				Illumina [2201695]	N
613	chr6_qbl_hap6	3688654	3688655	rs9268831	29534301	Nishida N	2018-03-13	Hepatology	Key HLA-DRB1-DQB1 haplotypes and role of the BTNL2 gene for response to a hepatitis B vaccine.	Response to hepatitis B vaccine	107 Japanese ancestry low responder individuals, 351 Japanese ancestry intermediate responder individuals, 735 Japanese ancestry high responder individuals	NA	6p21.32	HLA-DRAB5	rs9268831-?		1E-13		0.192	unit decrease	Affymetrix [427664]	N
613	chr6_qbl_hap6	3688695	3688696	rs9268832	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs9268832-T	0.49	7E-10		0.14	[0.10-0.20]	Illumina [NR] (imputed)	N
613	chr6_qbl_hap6	3689021	3689022	rs9268835	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DRB9	rs9268835-A	NR	4E-20		0.0276383	[0.022-0.034] unit increase	Affymetrix [319769] (imputed)	N
613	chr6_qbl_hap6	3689021	3689022	rs9268835	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DRB9	rs9268835-A	NR	4E-20		0.0276817	[0.022-0.034] unit increase	Affymetrix [319769] (imputed)	N
613	chr6_qbl_hap6	3689021	3689022	rs9268835	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	HLA-DRB9	rs9268835-A	NR	7E-13		0.0218474	[0.016-0.028] unit increase	Affymetrix [321114] (imputed)	N
613	chr6_qbl_hap6	3689191	3689192	rs6903608	24920014	Cozen W	2014-06-12	Nat Commun	A meta-analysis of Hodgkin lymphoma reveals 19p13.3 TCF3 as a novel susceptibility locus.	Hodgkin's lymphoma	1,816 European ancestry cases, 7,877 European ancestry controls	1,281 European ancestry cases, 3,218 European ancestry controls	6p21.32	HLA class II, HLA class I	rs6903608-C	0.30	7E-31		1.64	[1.51-1.78]	Affymetrix, Illumina [1004829] (imputed)	N
613	chr6_qbl_hap6	3689191	3689192	rs6903608	24149102	Frampton M	2013-10-22	Nat Commun	Variation at 3p24.1 and 6q23.3 influences the risk of Hodgkin's lymphoma.	Hodgkin's lymphoma	1,465 European ancestry cases, 6,417 European ancestry controls	1,071 European ancestry cases, 953 cases, 1,853 controls	6p21.32	NR	rs6903608-G	0.27	5E-27		1.62	[NR]	Illumina [296129]	N
613	chr6_qbl_hap6	3689191	3689192	rs6903608	21037568	Enciso-Mora V	2010-10-31	Nat Genet	A genome-wide association study of Hodgkin's lymphoma identifies new susceptibility loci at 2p16.1 (REL), 8q24.21 and 10p14 (GATA3).	Hodgkin's lymphoma	589 European ancestry cases, 5,199 European ancestry controls	2,057 European ancestry cases, 3,416 European ancestry controls	6p21.32	HLA-DRA	rs6903608-G	0.27	3E-50		1.7	[1.58-1.82]	Illumina [504374]	N
613	chr6_qbl_hap6	3689678	3689679	rs9268839	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	6p21.32	HLA-DRB1	rs9268839-A	NR	1E-100		0.737171	[0.52-0.95] unit decrease	Illumina [8380626] (imputed)	N
613	chr6_qbl_hap6	3689678	3689679	rs9268839	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	6p21.32	HLA-DRB1	rs9268839-A	0.750718391	3E-7	(AA)	0.623752	[0.39-0.86] unit decrease	Illumina [8380626] (imputed)	N
613	chr6_qbl_hap6	3689678	3689679	rs9268839	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	6p21.32	HLA-DRB1	rs9268839-A	0.56	4E-134	(East Asian)	0.64731	[0.6-0.7] unit decrease	Illumina [8380626] (imputed)	N
613	chr6_qbl_hap6	3689678	3689679	rs9268839	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	6p21.32	HLA-DRB1	rs9268839-A	0.55	1E-250	(EA)	0.90412	[0.87-0.94] unit decrease	Illumina [8380626] (imputed)	N
613	chr6_qbl_hap6	3689678	3689679	rs9268839	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	6p21.32	HLA-DRB1	rs9268839-G	0.45	1E-250	(EA)	2.47	[2.39-2.55]	Affymetrix, Illumina [up to 9739303] (imputed)	N
613	chr6_qbl_hap6	3689678	3689679	rs9268839	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	6p21.32	HLA-DRB1	rs9268839-G	0.45	1E-250		2.28	[2.22-2.34]	Affymetrix, Illumina [up to 9739303] (imputed)	N
613	chr6_qbl_hap6	3689678	3689679	rs9268839	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	6p21.32	HLA-DRB1	rs9268839-G	0.44	2E-145	(East Asian)	1.9	[1.81-1.99]	Affymetrix, Illumina [up to 9739303] (imputed)	N
613	chr6_qbl_hap6	3690110	3690111	rs9268845	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	HLA-DRB9	rs9268845-T	NR	1E-11		0.0248689	[0.018-0.032] unit decrease	Affymetrix [127266] (imputed)	N
613	chr6_qbl_hap6	3690151	3690152	rs9268846	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DRB9	rs9268846-G	NR	5E-10		0.0201434	[0.014-0.026] unit increase	Affymetrix [323858] (imputed)	N
613	chr6_qbl_hap6	3690151	3690152	rs9268846	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	HLA-DRB9	rs9268846-G	NR	2E-9		0.019558	[0.013-0.026] unit increase	Affymetrix [127266] (imputed)	N
613	chr6_qbl_hap6	3690209	3690210	rs9268848	32890573	Yan Q	2020-09-02	J Allergy Clin Immunol	A genome-wide association study of asthma hospitalizations in adults.	Exacerbations requiring hospitalisation in asthma	1,658 British ancestry cases, 32,509 British ancestry controls	NA	6p21.32	NR	rs9268848-G	0.42	2E-6		0.84	[NR]	Affymetrix [87696888] (imputed)	N
613	chr6_qbl_hap6	3690209	3690210	rs9268848	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	6p21.32	HLA-DRB9	rs9268848-A	0.551419	2E-25		0.025138251	[0.02-0.03] unit increase	Affymetrix [93095623] (imputed)	N
613	chr6_qbl_hap6	3690209	3690210	rs9268848	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	6p21.32	NR	rs9268848-?	NR	3E-20				Affymetrix [~ 8270000] (imputed)	N
613	chr6_qbl_hap6	3690209	3690210	rs9268848	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	6p21.32	HLA-DRA	rs9268848-A	0.6148	6E-9	(East Asian)	0.0347	[0.023-0.046] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
613	chr6_qbl_hap6	3690488	3690489	rs9268851	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein H6PD	5,364 Icelandic ancestry individuals	NA	6p21.32		rs9268851-A	0.2209	1E-96		0.45447	[0.41-0.5] unit increase	Illumina [7506463] (imputed)	N
613	chr6_qbl_hap6	3690549	3690550	rs9268853	30552108	Kawabata Y	2018-12-14	Diabetes	A genome-Wide Association Study Confirming a Strong Effect of HLA and Identifying Variants in CSAD/lnc-ITGB7-1 on Chromosome 12q13.13 Associated with Susceptibility to Fulminant Type 1 Diabetes.	Fulminant type 1 diabetes	257 Japanese ancestry cases, 419 Japanese ancestry controls	NA	6p21.32	HLA	rs9268853-?	NR	2E-23		3.18	[2.53-4.01]	Affymetrix [426851] (imputed)	N
613	chr6_qbl_hap6	3690549	3690550	rs9268853	23511034	Yang SK	2013-04-01	Inflamm Bowel Dis	Genome-wide association study of ulcerative colitis in Koreans suggests extensive overlapping of genetic susceptibility with Caucasians.	Ulcerative colitis	388 Korean ancestry cases, 739 Korean ancestry controls	417 Korean ancestry cases, 732 Korean ancestry controls	6p21.32	MHC	rs9268853-T	0.64	3E-6		1.37	[1.20-1.56]	Illumina [581060]	N
613	chr6_qbl_hap6	3690549	3690550	rs9268853	23349640	Vijai J	2013-01-17	PLoS Genet	Susceptibility loci associated with specific and shared subtypes of lymphoid malignancies.	Lymphoma	275 Follicular non-Hodgkin's Lymphoma cases, 269 diffuse large B-cell non-Hodgkin's Lymphoma cases, 198 other non-Hodgkin's Lymphoma cases, 202 Hodgkin's Lymphoma cases, 4,044 controls	202 European ancestry Follicular non-Hodgkin's Lymphoma cases, 367 European ancestry diffuse large B-cell non-Hodgkin's Lymphoma cases, 577 European ancestry other non-Hodgkin's Lymphoma cases, 99 European ancestry Hodgkin's Lymphoma cases, 2,596 European ancestry controls	6p21.32	BTLN2, HLA-DRA, HLA-DRB5, HLA-DRB1	rs9268853-C	NR	2E-10	(FL)	1.56	[NR]	Affymetrix [530583]	N
613	chr6_qbl_hap6	3690549	3690550	rs9268853	21297633	Anderson CA	2011-02-06	Nat Genet	Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47.	Ulcerative colitis	6,687 European ancestry cases, 19,718 European ancestry controls	9,628 European ancestry cases, 12,917 European ancestry controls	6p21.32	HLA-DRA, HLA-DRB5, BTNL2, HLA-DRB1, HLA-DQA1	rs9268853-T	0.66	1E-55		1.4	[1.34-1.47]	Affymetrix, Illumina [~ 1100000] (imputed)	N
613	chr6_qbl_hap6	3690625	3690626	rs9268856	24943344	Ferrari R	2014-07-01	Lancet Neurol	Frontotemporal dementia and its subtypes: a genome-wide association study.	Frontotemporal dementia	1,377 European ancestry behavioural variant cases, 308 European ancestry Semantic dementia cases, 269 European ancestry Progressive nonfluent aphasia cases, 200 European ancestry Frontotremporal dementia with motor neuron disease cases, up to 4,308 European ancestry controls	690 European ancestry behavioural variant cases, 190 European ancestry Semantic dementia cases, 221 European ancestry Progressive nonfluent aphasia cases, 94 European ancestry Frontotremporal dementia with motor neuron disease cases, 177 European ancestry Frontotemporal lobar degeneration cases, up to 5,094 European ancestry controls	6p21.32	HLA-DRA, HLA-DRB5, BTNL2	rs9268856-C	0.748	6E-9	(All Frontotemporal dementia)	1.24	[1.16-1.32]	Illumina [6026385] (imputed)	N
613	chr6_qbl_hap6	3692054	3692055	rs9268877	29905830	Lee HS	2018-08-01	J Crohns Colitis	An Intergenic Variant rs9268877 Between HLA-DRA and HLA-DRB Contributes to the Clinical Course and Long-term Outcome of Ulcerative Colitis.	Poor prognosis in Crohn's disease	243 Korean ancestry poor prognosis cases, 364 Korean ancestry good prognosis controls	145 Korean ancestry poor prognosis cases, 129 Korean ancestry good prognosis controls	6p21.32	NA	rs9268877-A	0.35	1E-8		1.72	[1.43-2.07]	Illumina [up to 519662]	N
613	chr6_qbl_hap6	3692054	3692055	rs9268877	19915572	Barrett JC	2009-11-15	Nat Genet	Genome-wide association study of ulcerative colitis identifies three new susceptibility loci, including the HNF4A region.	Ulcerative colitis	2,361 European ancestry cases, 5,417 European ancestry controls	2,321 European ancestry cases, 4,818 European ancestry controls	6p21.32	MHC	rs9268877-?	NR	4E-23				Affymetrix [NR]	N
613	chr6_qbl_hap6	3692054	3692055	rs9268877	18836448	Franke A	2008-10-05	Nat Genet	Sequence variants in IL10, ARPC2 and multiple other loci contribute to ulcerative colitis susceptibility.	Ulcerative colitis	1,167 European ancestry cases, 777 European ancestry controls	1,855 European ancestry cases, 3,091 European ancestry controls	6p21.32	HLA-DRA, BTNL2	rs9268877-T	0.45	6E-18		1.45	[1.33-1.58]	Affymetrix [355262]	N
613	chr6_qbl_hap6	3692875	3692876	rs9268896	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs9268896-A	0.232	3E-20	(Complement C4, C4A.C4B.4481.34.2)	0.28	[0.22-0.34] unit decrease	Affymetrix [10572788] (imputed)	N
613	chr6_qbl_hap6	3692987	3692988	rs9268905	28041642	Carmona FD	2016-12-29	Am J Hum Genet	A Genome-wide Association Study Identifies Risk Alleles in Plasminogen and P4HA2 Associated with Giant Cell Arteritis.	Giant cell arteritis	2,134 European ancestry cases, 9,125 European ancestry controls	NA	6p21.32	HLA-DRA, HLA-DRB1	rs9268905-?	0.37	2E-54		1.79	[1.67-1.93]	Illumina [1844133] (imputed)	N
613	chr6_qbl_hap6	3692987	3692988	rs9268905	21602797	Wright FA	2011-05-22	Nat Genet	Genome-wide association and linkage identify modifier loci of lung disease severity in cystic fibrosis at 11p13 and 20q13.2.	Cystic fibrosis severity	2,317 European ancestry cases, 177 cases	898 European ancestry sibling pair cases, 75 sibling pair cases	6p21.32	HLA-DRA	rs9268905-C	0.32	1E-7				Illumina [~ 2609000] (imputed)	N
613	chr6_qbl_hap6	3693410	3693411	rs78218185	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Asthma	13,015 East Asian ancestry cases, 162,933 East Asian ancestry controls	NA	6p21.32		rs78218185-A	0.135952394	4E-43		0.27918372	[0.24-0.32] unit increase	Illumina [13429513] (imputed)	N
613	chr6_qbl_hap6	3693745	3693746	rs9268923	26819262	Zhou Y	2016-01-27	Mult Scler	Genetic loci for Epstein-Barr virus nuclear antigen-1 are associated with risk of multiple sclerosis.	Epstein Barr virus nuclear antigen 1 IgG levels	1,243 parents and up to 2,356 children from 992 families, 1,956 Mexican American individuals		6p21.32	HLA-DRB5, HLA-DQA1, HLA-DRA, HLA-DRB1	rs9268923-C	0.552	1E-11	(non-Mexican American parents and children)	0.18	unit increase	Illumina [up to 2428201] (imputed)	N
613	chr6_qbl_hap6	3693745	3693746	rs9268923	26819262	Zhou Y	2016-01-27	Mult Scler	Genetic loci for Epstein-Barr virus nuclear antigen-1 are associated with risk of multiple sclerosis.	Epstein Barr virus nuclear antigen 1 IgG levels	1,243 parents and up to 2,356 children from 992 families, 1,956 Mexican American individuals		6p21.32	HLA-DRA, HLA-DRB5, HLA-DQA1, HLA-DRB1	rs9268923-C	0.552	1E-13	(non-Mexican American parents)	0.252	unit increase	Illumina [up to 2428201] (imputed)	N
613	chr6_qbl_hap6	3693745	3693746	rs9268923	26819262	Zhou Y	2016-01-27	Mult Scler	Genetic loci for Epstein-Barr virus nuclear antigen-1 are associated with risk of multiple sclerosis.	Epstein Barr virus nuclear antigen 1 IgG levels	1,243 parents and up to 2,356 children from 992 families, 1,956 Mexican American individuals		6p21.32	HLA-DRA, HLA-DRB5, HLA-DQA1, HLA-DRB1	rs9268923-C	0.552	1E-11	(non-Mexican American sero-positive children)	0.225	unit increase	Illumina [up to 2428201] (imputed)	N
613	chr6_qbl_hap6	3693745	3693746	rs9268923	20228798	Franke A	2010-03-14	Nat Genet	Genome-wide association study for ulcerative colitis identifies risk loci at 7q22 and 22q13 (IL17REL).	Ulcerative colitis	1,043 European ancestry cases, 1,703 European ancestry controls	2,539 European ancestry cases, 5,428 European ancestry controls	6p21.32	HLA-DRA	rs9268923-C	0.67	4E-15		1.45	[1.33-1.59]	Affymetrix [1897764] (imputed)	N
613	chr6_qbl_hap6	3693879	3693880	rs9268925	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	6p21.32	Intergenic	rs9268925-C	NR	1E-23		0.0788801	[0.063-0.094] unit increase	Illumina [13520550] (imputed)	N
613	chr6_qbl_hap6	3693967	3693968	rs9469120	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Yeast infection	52,218 European ancestry cases, 10,235 European ancestry controls	NA	6p21.32	NR	rs9469120-?	NR	9E-8		0.0846	[0.054-0.116] unit decrease	Illumina [at least 560000] (imputed)	N
613	chr6_qbl_hap6	3694035	3694036	rs113585425	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs113585425-C	0.19	4E-8		4.04	[3.10-5.28]	Illumina [NR] (imputed)	N
613	chr6_qbl_hap6	3694077	3694078	rs2395185	25186300	Terao C	2014-09-03	Arthritis Rheumatol	Association between antinuclear antibodies and the HLA class II locus and heterogeneous characteristics of staining patterns: the Nagahama study.	Antinuclear antibody levels	3,185 Japanese ancestry individuals	3,963 Japanese ancestry individuals	6p21.32	HLA-DRA, HLA-DRB5	rs2395185-?	NR	1E-11		0.25	unit increase	Illumina [303506]	N
613	chr6_qbl_hap6	3694077	3694078	rs2395185	23143601	Lan Q	2012-11-11	Nat Genet	Genome-wide association analysis identifies new lung cancer susceptibility loci in never-smoking women in Asia.	Lung cancer	5,510 East Asian ancestry cases, 4,544 East Asian ancestry controls	1,099 East Asian ancestry cases, 2,913 East Asian ancestry controls	6p21.32	HLA class II	rs2395185-T	0.35	1E-8		1.17	[1.11-1.23]	Illumina [596032]	N
613	chr6_qbl_hap6	3694077	3694078	rs2395185	22286212	Urayama KY	2012-01-27	J Natl Cancer Inst	Genome-wide association study of classical Hodgkin lymphoma and Epstein-Barr virus status-defined subgroups.	Hodgkin's lymphoma	1,200 European ancestry cases, 6,417 European ancestry controls	563 European ancestry cases, 613 European ancestry controls	6p21.32	HLA-DRA	rs2395185-?	NR	4E-31	(Total cHL)	1.82	[1.67-2.00]	Illumina [502514]	N
613	chr6_qbl_hap6	3694077	3694078	rs2395185	20228799	McGovern DP	2010-03-14	Nat Genet	Genome-wide association identifies multiple ulcerative colitis susceptibility loci.	Ulcerative colitis	2,693 European ancestry cases, 6,791 European ancestry controls	2,009 European ancestry cases, 1,580 European ancestry controls	6p21.32	C6orf10, BTNL2, HLA	rs2395185-G	NR	9E-23		1.49	[NR]	Illumina [266047]	N
613	chr6_qbl_hap6	3694077	3694078	rs2395185	19915573	Asano K	2009-11-15	Nat Genet	A genome-wide association study identifies three new susceptibility loci for ulcerative colitis in the Japanese population.	Ulcerative colitis	376 Japanese ancestry cases, 934 Japanese ancestry controls	376 Japanese ancestry cases, 1,097 Japanese ancestry controls	6p21.32	intergenic	rs2395185-G	0.61	5E-22		1.92	[1.68-2.19]	Illumina [513923]	N
613	chr6_qbl_hap6	3694077	3694078	rs2395185	19122664	Silverberg MS	2009-01-04	Nat Genet	Ulcerative colitis-risk loci on chromosomes 1p36 and 12q15 found by genome-wide association study.	Ulcerative colitis	1,022 European ancestry cases, 2,503 European ancestry controls	1,387 European ancestry cases, 1,115 European ancestry controls	6p21.32	HLA-DQB1, HLA-DRA, BTNL2, HLA-DRB5, HLA-DRB1, HLA-DQA1	rs2395185-?	0.67	1E-16		1.52		Illumina [280748]	N
613	chr6_qbl_hap6	3694186	3694187	rs2894257	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p21.32	HLA-DRADQA2	rs2894257-C	0.53	8E-36		1.36	[1.33-1.39]	Illumina [at least 560000] (imputed)	N
613	chr6_qbl_hap6	3694228	3694229	rs2395190	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic sinusitis	4,617 East Asian ancestry cases, 152,226 East Asian ancestry controls	NA	6p21.32		rs2395190-T	0.301110024	1E-29		0.26669198	[0.22-0.31] unit decrease	Illumina [13426486] (imputed)	N
613	chr6_qbl_hap6	3694656	3694657	rs9268948	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DRB9	rs9268948-G	NR	2E-9		0.0189254	[0.013-0.025] unit decrease	Affymetrix [319769] (imputed)	N
613	chr6_qbl_hap6	3694656	3694657	rs9268948	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DRB9	rs9268948-G	NR	2E-9		0.0190762	[0.013-0.025] unit decrease	Affymetrix [319769] (imputed)	N
613	chr6_qbl_hap6	3694669	3694670	rs35880697	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6p21.32	NR	rs35880697-?	NR	7E-10				Affymetrix [~ 8270000] (imputed)	N
613	chr6_qbl_hap6	3696248	3696249	rs4947340	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	6p21.32	HLA-DRB9	rs4947340-T	0.40103	1E-52		0.0369333	[0.032-0.042] unit decrease	Affymetrix [93095623] (imputed)	N
613	chr6_qbl_hap6	3696261	3696262	rs4947257	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p21.32	NR	rs4947257-?	NR	1E-12		0.0988	[0.071-0.126] unit decrease	Illumina [at least 560000] (imputed)	N
613	chr6_qbl_hap6	3696458	3696459	rs9268989	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs9268989-A	0.378	6E-14		0.856	[0.81-0.9]	Illumina [11270530] (imputed)	N
613	chr6_qbl_hap6	3697149	3697150	rs9391782	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	6p21.32		rs9391782-C	0.36641	1E-6		0.033747	[0.02-0.047] unit increase	Affymetrix [15580782] (imputed)	N
613	chr6_qbl_hap6	3698453	3698454	rs9269029	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs9269029-A	0.176	2E-8		0.866	[0.82-0.92]	Illumina [11270530] (imputed)	N
613	chr6_qbl_hap6	3698523	3698524	rs9405038	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	High density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	6p21.32	HLA-DRA, HLA-DRB5	rs9405038-?		1E-13		0.0366	[0.027-0.046] unit decrease	Illumina [31500000] (imputed)	N
613	chr6_qbl_hap6	3699152	3699153	rs9269041	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on Dendritic Cell	2,871 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9269041-A	0.60762	1E-9		0.2062	[0.14-0.27] unit decrease	Illumina [17926566] (imputed)	N
613	chr6_qbl_hap6	3701231	3701233	rs145954018	30674883	Jin Y	2019-01-23	Nat Commun	Early-onset autoimmune vitiligo associated with an enhancer variant haplotype that upregulates class II HLA expression.	Vitiligo (early onset)	704 European ancestry cases, 9,031 European ancestry controls	375 European ancestry cases, 1,455 European ancestry controls	6p21.32	NR	rs145954018-?	NR	3E-54		4.62	[4.42-4.82]	NR [up to 494043] (imputed)	N
613	chr6_qbl_hap6	3701652	3701653	rs9357149	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.32		rs9357149-C	0.982	4E-24				Affymetrix [10369434] (imputed)	N
613	chr6_qbl_hap6	3701878	3701879	rs9269080	30578877	Dahlin A	2018-12-19	J Allergy Clin Immunol	Large-scale, multi-ethnic genome-wide association study identifies novel loci contributing to asthma susceptibility in adults.	Adult asthma	16,274 European ancestry cases, 38,269 European ancestry controls	10,365 European ancestry cases, 16,110 European ancestry controls, cases and controls (see Moffatt et al 2010)	6p21.32	HLA-DRB9	rs9269080-?	NR	1E-8		1.098901	[1.05-1.11]	Affymetrix [7230512] (imputed)	N
613	chr6_qbl_hap6	3702009	3702010	rs9269081	29196614	Sud A	2017-12-01	Nat Commun	Genome-wide association study of classical Hodgkin lymphoma identifies key regulators of disease susceptibility.	Nodular sclerosis Hodgkin lymphoma	1,278 European ancestry cases, 14,325 European ancestry controls	1,586 cases, 3,069 controls	6p21.32	HLA-DRA	rs9269081-?	NR	2E-39		1.82	[1.67-2.00]	Illumina [> 10000000] (imputed)	N
613	chr6_qbl_hap6	3702605	3702606	rs2071805	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Osteoporosis	8,520 European ancestry cases, 479,981 European ancestry controls, 9,794 East Asian ancestry cases, 168,932 East Asian ancestry controls	NA	6p21.32		rs2071805-T	NR	9E-10		0.144	[0.098-0.19] unit decrease	Affymetrix, Illumina [25844994] (imputed)	N
613	chr6_qbl_hap6	3703028	3703029	rs34452045	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs34452045-G	0.145	3E-31		0.694	[0.63-0.75]	Illumina [11270530] (imputed)	N
613	chr6_qbl_hap6	3704132	3704133	rs9269108	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p21.32	NR	rs9269108-?	NR	3E-6		4.641	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
613	chr6_qbl_hap6	3704175	3704176	rs9269109	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8+ Natural Killer T Absolute Count	3,652 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9269109-C	0.36376	3E-8		0.1671	[0.11-0.23] unit increase	Illumina [18427348] (imputed)	N
613	chr6_qbl_hap6	3704175	3704176	rs9269109	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28- CD25++ CD8+ T cell Absolute Count	3,130 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9269109-C	0.35879	1E-8		0.1597	[0.11-0.21] unit increase	Illumina [18189521] (imputed)	N
613	chr6_qbl_hap6	3704708	3704709	rs28895243	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	6p21.32	HLA-DRB9	rs28895243-G	0.039859	5E-20		0.05294043	[0.042-0.064] unit decrease	Affymetrix [93095623] (imputed)	N
613	chr6_qbl_hap6	3704977	3704978	rs116353692	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (adrenergics, inhalants)	5,880 East Asian ancestry cases, 172,846 East Asian ancestry controls	NA	6p21.32		rs116353692-C	0.139167381	2E-13		0.21394032	[0.16-0.27] unit increase	Illumina [13429980] (imputed)	N
613	chr6_qbl_hap6	3705107	3705108	rs12194148	21156761	Padyukov L	2010-12-14	Ann Rheum Dis	A genome-wide association study suggests contrasting associations in ACPA-positive versus ACPA-negative rheumatoid arthritis.	Rheumatoid arthritis	1,147 European ancestry ACPA positive RA cases, 774 European ancestry ACPA negative RA cases, 1,079 European ancestry controls	887 European ancestry ACPA positive RA cases, 1,218 European ancestry controls	6p21.32	HLA	rs12194148-?	NR	5E-58	(ACPA-positive RA vs controls)			Illumina [1723056] (imputed)	N
613	chr6_qbl_hap6	3705453	3705454	rs12195582	25279986	Skibola CF	2014-10-02	Am J Hum Genet	Genome-wide association study identifies five susceptibility loci for follicular lymphoma outside the HLA region.	Follicular lymphoma	2,728 European ancestry cases, 7,758 European ancestry controls	1,795 European ancestry cases, 5,586 European ancestry controls	6p21.32	HLA	rs12195582-T	0.465	5E-100		1.78	[1.69-1.88]	Illumina [up to 21554489]	N
613	chr6_qbl_hap6	3706054	3706055	rs9269136	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DRB9	rs9269136-G	NR	1E-11		0.0239787	[0.017-0.031] unit decrease	Affymetrix [321169] (imputed)	N
613	chr6_qbl_hap6	3706298	3706303	rs200093869	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Iron deficiency anemia	12,317 European ancestry cases, 468,624 European ancestry controls, 4,618 East Asian ancestry cases, 174,057 East Asian ancestry controls	NA	6p21.32		rs200093869-C	NR	1E-12		0.1142	[0.083-0.146] unit increase	Affymetrix, Illumina [25844780] (imputed)	N
613	chr6_qbl_hap6	3706408	3706409	rs9269143	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DRB9	rs9269143-T	NR	2E-9		0.0207074	[0.014-0.027] unit decrease	Affymetrix [319769] (imputed)	N
613	chr6_qbl_hap6	3706408	3706409	rs9269143	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DRB9	rs9269143-T	NR	1E-8		0.0198652	[0.013-0.027] unit decrease	Affymetrix [319769] (imputed)	N
613	chr6_qbl_hap6	3706600	3706601	rs9378212	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	6p21.32	NR	rs9378212-T	0.469078	7E-211		0.059685	[0.056-0.063] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
613	chr6_qbl_hap6	3706600	3706601	rs9378212	27286809	Ligthart S	2016-06-10	BMC Genomics	Bivariate genome-wide association study identifies novel pleiotropic loci for lipids and inflammation.	C-reactive protein levels or HDL-cholesterol levels (pleiotropy)	65,000 individuals (C-reactive protein), 99,900 individuals (HDL-cholesterol)	NA	6p21.32	HLA-DRA	rs9378212-T	NR	7E-10				NR [2501543] (imputed)	N
613	chr6_qbl_hap6	3706825	3706826	rs28895267	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.32		rs28895267-C	0.518	1E-110				Affymetrix [10369434] (imputed)	N
613	chr6_qbl_hap6	3706825	3706826	rs28895267	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DRB9	rs28895267-T	NR	9E-16		0.0253192	[0.019-0.031] unit increase	Affymetrix [323858] (imputed)	N
613	chr6_qbl_hap6	3706825	3706826	rs28895267	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	HLA-DRB9	rs28895267-T	NR	4E-15		0.0247032	[0.019-0.031] unit increase	Affymetrix [127266] (imputed)	N
613	chr6_qbl_hap6	3706901	3706902	rs17209866	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p21.32	NR	rs17209866-A	0.453955	2E-344				Affymetrix, Illumina [24649327] (imputed)	N
613	chr6_qbl_hap6	3707368	3707369	rs17203563	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28- CD127- CD25++ CD8+ T cell Absolute Count	3,130 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs17203563-A	0.26383	5E-8		0.1789	[0.11-0.24] unit increase	Illumina [18189521] (imputed)	N
613	chr6_qbl_hap6	3707626	3707627	rs7453498	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Dementia and core Alzheimer's disease neuropathologic changes	up to 3,887 cases, up to 1,027 controls	NA	6p21.32	intergenic	rs7453498-C	0.8656	3E-6	(Complete)	0.8142	[0.47-1.16] unit increase	Affymetrix, Illumina [NR] (imputed)	N
613	chr6_qbl_hap6	3707994	3707995	rs2395191	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic obstructive pulmonary disease	13,530 European ancestry cases, 454,945 European ancestry controls, 4,017 East Asian ancestry cases, 162,653 East Asian ancestry controls	NA	6p21.32		rs2395191-C	NR	9E-10		0.077	[0.052-0.102] unit increase	Affymetrix, Illumina [25843162] (imputed)	N
613	chr6_qbl_hap6	3707994	3707995	rs2395191	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8 on Natural Killer T	3,103 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs2395191-C	0.36584	2E-9		0.1751	[0.12-0.23] unit increase	Illumina [18027570] (imputed)	N
613	chr6_qbl_hap6	3707994	3707995	rs2395191	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs2395191-C	NR	6E-10		1.1764705	[1.12-1.24]	Affymetrix [7846216] (imputed)	N
613	chr6_qbl_hap6	3708553	3708554	rs2395192	33204752	Butler-Laporte G	2020-09-24	Open Forum Infect Dis	Genetic Determinants of Antibody-Mediated Immune Responses to Infectious Diseases Agents: A Genome-Wide and HLA Association Study.	Epstein-Barr virus EA-D antibody levels	7,763 White British ancestry individuals	NA	6p21.32	HLA-DRB9	rs2395192-C	0.440	3E-16		0.13	[0.099-0.161] unit decrease	NR [25472218] (imputed)	N
613	chr6_qbl_hap6	3708553	3708554	rs2395192	31102405	Labreche K	2019-05-17	Neuro Oncol	A genome-wide association study identifies susceptibility loci for primary central nervous system lymphoma at 6p25.3 and 3p22.1: a LOC network study.	Primary central nervous system lymphoma	475 European ancestry cases, 1,134 European ancestry controls	NA	6p21.32	HLA-DRA	rs2395192-C	0.59	2E-7		1.51	[1.29-1.76]	Illumina [> 10000000] (imputed)	N
613	chr6_qbl_hap6	3709038	3709039	rs4410767	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p21.32		rs4410767-T	0.526	5E-70				Affymetrix [10369434] (imputed)	N
613	chr6_qbl_hap6	3709307	3709308	rs9378213	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR+ CD8+ T cell Absolute Count	3,579 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9378213-T	0.69391	5E-15		0.2434	[0.18-0.3] unit decrease	Illumina [18377359] (imputed)	N
613	chr6_qbl_hap6	3709307	3709308	rs9378213	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR+ CD8+ T cell %T cell	3,595 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9378213-T	0.6942999999999999	4E-11		0.1984	[0.14-0.26] unit decrease	Illumina [18380839] (imputed)	N
613	chr6_qbl_hap6	3709307	3709308	rs9378213	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.32	NOTCH4, C6orf10	rs9378213-G	0.41690000000000005	4E-8	(EA)	0.0227	[0.015-0.031] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
613	chr6_qbl_hap6	3709307	3709308	rs9378213	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6p21.32	BTNL2	rs9378213-G	0.41690000000000005	6E-7	(EA)	0.0232	[0.014-0.032] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
613	chr6_qbl_hap6	3709307	3709308	rs9378213	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.32	NOTCH4, C6orf10	rs9378213-?	0.41690000000000005	1E-7	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
613	chr6_qbl_hap6	3709470	3709471	rs9391786	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Automobile speeding propensity	404,291 European ancestry individuals	NA	6p21.32	HLA-DRB5	rs9391786-A	0.5802	2E-9		0.013639976	[0.0092-0.0181] unit increase	Affymetrix [11514463] (imputed)	N
613	chr6_qbl_hap6	3709508	3709509	rs7748270	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	6p21.32		rs7748270-?	NR	4E-12		0.00632062	[0.0045-0.0081] unit decrease	NR [NR]	N
613	chr6_qbl_hap6	3709508	3709509	rs7748270	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.32		rs7748270-C	0.487	1E-35				Affymetrix [10369434] (imputed)	N
613	chr6_qbl_hap6	3709508	3709509	rs7748270	24782177	Jiang L	2014-05-01	Arthritis Rheumatol	Novel risk loci for rheumatoid arthritis in Han Chinese and congruence with risk variants in Europeans.	Rheumatoid arthritis	433 Han Chinese ancestry ACPA positive cases, 519 Han Chinese ancestry ACPA negative cases, 943 Han Chinese ancestry controls	1,032 Han Chinese ancestry ACPA positive cases, 1,100 Han Chinese ancestry ACPA negative cases, 2,553 Han Chinese ancestry controls	6p21.32	MHC	rs7748270-T	0.525	4E-13	(all cases vs. all controls)	1.7361	[NR]	Affymetrix [3441843] (imputed)	N
613	chr6_qbl_hap6	3709508	3709509	rs7748270	24782177	Jiang L	2014-05-01	Arthritis Rheumatol	Novel risk loci for rheumatoid arthritis in Han Chinese and congruence with risk variants in Europeans.	Rheumatoid arthritis	433 Han Chinese ancestry ACPA positive cases, 519 Han Chinese ancestry ACPA negative cases, 943 Han Chinese ancestry controls	1,032 Han Chinese ancestry ACPA positive cases, 1,100 Han Chinese ancestry ACPA negative cases, 2,553 Han Chinese ancestry controls	6p21.32	MHC	rs7748270-T	0.525	1E-16	(ACPA+ cases vs. all controls)	2.01	[NR]	Affymetrix [3441843] (imputed)	N
613	chr6_qbl_hap6	3709639	3709640	rs116149201	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cervical cancer	6,563 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs116149201-G	NR	3E-9		3.5068	NR	Affymetrix [7846216] (imputed)	N
613	chr6_qbl_hap6	3709897	3709898	rs7749223	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	6p21.32		rs7749223-G	0.167732	2E-9		0.02290938	[0.015-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
613	chr6_qbl_hap6	3710320	3710321	rs1964995	31375628	Tengvall K	2019-08-02	Proc Natl Acad Sci U S A	Molecular mimicry between Anoctamin 2 and Epstein-Barr virus nuclear antigen 1 associates with multiple sclerosis risk.	Anti-anoctamin 2 antibody levels	11,936 European ancestry individuals	NA	6p21.32	NR	rs1964995-G	NR	2E-10		0.065	[0.041-0.089] unit decrease	Illumina [615763]	N
613	chr6_qbl_hap6	3710320	3710321	rs1964995	31102405	Labreche K	2019-05-17	Neuro Oncol	A genome-wide association study identifies susceptibility loci for primary central nervous system lymphoma at 6p25.3 and 3p22.1: a LOC network study.	Primary central nervous system lymphoma	475 European ancestry cases, 1,134 European ancestry controls	NA	6p21.32	NR	rs1964995-?	NR	4E-6		1.44	[1.23-1.68]	Illumina [> 10000000] (imputed)	N
613	chr6_qbl_hap6	3710320	3710321	rs1964995	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (non-Lofgren's syndrome)	568 Swedish ancestry cases, 2,025 Swedish ancestry controls	763 European ancestry cases, 4,901 European ancestry controls, 781 African American ancestry cases, 876 African American ancestry controls	6p21.32	HLA-DRA, HLA-DRB5	rs1964995-A	0.72	3E-32		1.67	[1.54-1.82]	Illumina [118177]	N
613	chr6_qbl_hap6	3710320	3710321	rs1964995	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (non-Lofgren's syndrome without extrapulmonary manifestations)	451 Swedish ancestry cases, 2,086 Swedish ancestry controls	NA	6p21.32	HLA-DRA, HLA-DRB5, C6orf10, BTNL2	rs1964995-A	0.7	4E-15		1.8165305	[1.57-2.11]	Illumina [118177]	N
613	chr6_qbl_hap6	3710432	3710433	rs9269202	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Nephrotic syndrome	1,314 East Asian ancestry cases, 177,412 East Asian ancestry controls	NA	6p21.32		rs9269202-C	0.823377102	5E-10		0.3571471	[0.24-0.47] unit decrease	Illumina [13429980] (imputed)	N
613	chr6_qbl_hap6	3710805	3710806	rs9269207	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs9269207-T	0.622	6E-48		0.754	[0.72-0.79]	Illumina [11270530] (imputed)	N
613	chr6_qbl_hap6	3710872	3710873	rs367607265	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.32	Intergenic	rs367607265-?		2E-7		1.74	[1.41-2.14]	Illumina [7645193] (imputed)	N
613	chr6_qbl_hap6	3710998	3710999	rs5020946	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PIGA	5,367 Icelandic ancestry individuals	NA	6p21.32		rs5020946-T	0.3884	4E-13		0.140613	[0.1-0.18] unit increase	Illumina [7506463] (imputed)	N
613	chr6_qbl_hap6	3710998	3710999	rs5020946	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	6p21.32	intergenic	rs5020946-T	0.4659	1E-94		0.07445833	[0.067-0.082] unit increase	Affymetrix [~ 2500000] (imputed)	N
613	chr6_qbl_hap6	3710998	3710999	rs5020946	26785701	Wen W	2016-01-20	Sci Rep	Genome-wide association studies in East Asians identify new loci for waist-hip ratio and waist circumference.	Waist-to-hip ratio adjusted for body mass index	up to 39,869 East Asian individuals	up to 20,137 East Asian individuals, up to 209,947 individuals	6p21.32	HLA-DRB5	rs5020946-T	0.411	1E-9	(East Asian)	0.031	[0.021-0.041] unit increase	Affymetrix, Illumina [at least 1850000] (imputed)	N
613	chr6_qbl_hap6	3710998	3710999	rs5020946	26785701	Wen W	2016-01-20	Sci Rep	Genome-wide association studies in East Asians identify new loci for waist-hip ratio and waist circumference.	Waist-to-hip ratio adjusted for body mass index	up to 39,869 East Asian individuals	up to 20,137 East Asian individuals, up to 209,947 individuals	6p21.32	HLA-DRB5	rs5020946-T	0.4108017315260166	4E-8	(East Asian women)	0.03568	[0.023-0.048] unit increase	Affymetrix, Illumina [at least 1850000] (imputed)	N
613	chr6_qbl_hap6	3711043	3711044	rs5020945	33209044	Ahn Y	2020-11-12	Diabetes Metab Syndr Obes	Identification of Genetic Variants for Female Obesity and Evaluation of the Causal Role of Genetically Defined Obesity in Polycystic Ovarian Syndrome.	Waist-hip ratio	4,658 Korean ancestry females	5,295 Korean ancestry females	6p21.32	NR	rs5020945-C	0.49	3E-7		0.005	[0.003-0.007] unit increase	Affymetrix [NR] (imputed)	N
613	chr6_qbl_hap6	3711489	3711490	rs35957722	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p21.32	NR	rs35957722-?	NR	4E-10		0.0687	[0.047-0.09] unit decrease	Illumina [at least 560000] (imputed)	N
613	chr6_qbl_hap6	3712271	3712272	rs113103322	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on plasmacytoid Dendritic Cell	2,872 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs113103322-A	0.11666	2E-27		0.5638	[0.46-0.66] unit increase	Illumina [17926607] (imputed)	N
613	chr6_qbl_hap6	3712393	3712394	rs28437337	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	6p21.32		rs28437337-T	0.36183	6E-8		0.038474	[0.025-0.052] unit increase	Affymetrix [15580782] (imputed)	N
613	chr6_qbl_hap6	3712667	3712668	rs78279385	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	CAG-180 sp000432435 abundance in stool	5,959 Finnish ancestry individuals	NA	6p21.32		rs78279385-A	0.255984	3E-8		0.158067	[0.1-0.21] unit increase	Illumina [7980478] (imputed)	N
613	chr6_qbl_hap6	3712667	3712668	rs78279385	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	74,970 East Asian ancestry individuals	NA	6p21.32		rs78279385-A	0.478006	1E-14		0.0379801	[0.028-0.048] unit increase	Illumina [13465896] (imputed)	N
613	chr6_qbl_hap6	3712671	3712672	rs9269233	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs9269233-A	0.23	3E-11		1.17	[1.12-1.22]	Illumina [11270530] (imputed)	N
613	chr6_qbl_hap6	3712697	3712698	rs9269234	28118524	Saxena R	2017-01-24	Arthritis Rheumatol	A Multinational Arab Genome-Wide Association Study Identifies New Genetic Associations for Rheumatoid Arthritis.	Rheumatoid arthritis (rheumatoid factor and/or anti-cyclic citrullinated peptide seropositive)	357 African admixed and non-African admixed Arab ancestry cases, 352 African admixed and non-African admixed Arab ancestry controls	234 Arab ancestry cases, 225 Arab ancestry controls	6p21.32	HLA-DRB1	rs9269234-G	0.65	6E-16		2.14	[1.78-2.57]	Illumina [7000653] (imputed)	N
613	chr6_qbl_hap6	3712697	3712698	rs9269234	28118524	Saxena R	2017-01-24	Arthritis Rheumatol	A Multinational Arab Genome-Wide Association Study Identifies New Genetic Associations for Rheumatoid Arthritis.	Rheumatoid arthritis	97 African admixed Arab ancestry cases, 410 non-African admixed Arab ancestry cases, 4 Arab ancestry cases, 56 African admixed Arab ancestry controls, 290 non-African admixed Arab ancestry controls, 6 Arab ancestry controls	283 Arab ancestry cases, 221 Arab ancestry controls	6p21.32	HLA-DRB1	rs9269234-G	0.65	5E-11		1.75	[1.48-2.06]	Illumina [7000653] (imputed)	N
613	chr6_qbl_hap6	3712743	3712744	rs62405562	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on naive-mature B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs62405562-G	0.45562	9E-11		0.1848	[0.13-0.24] unit increase	Illumina [18238311] (imputed)	N
613	chr6_qbl_hap6	3712743	3712744	rs62405562	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on IgD+ CD38dim B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs62405562-G	0.45562	2E-15		0.2285	[0.17-0.28] unit increase	Illumina [18238311] (imputed)	N
613	chr6_qbl_hap6	3712743	3712744	rs62405562	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on IgD+ CD24- B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs62405562-G	0.45562	1E-11		0.1942	[0.14-0.25] unit increase	Illumina [18238311] (imputed)	N
613	chr6_qbl_hap6	3712743	3712744	rs62405562	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on IgD+ B cell	3,658 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs62405562-G	0.45576	2E-11		0.1921	[0.14-0.25] unit increase	Illumina [18238340] (imputed)	N
613	chr6_qbl_hap6	3712806	3712807	rs2395201	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	6p21.32	NR	rs2395201-?	NR	6E-17	(CCL19)	0.579204	[0.44-0.71] unit increase	Illumina [11901634] (imputed)	N
613	chr6_qbl_hap6	3712853	3712854	rs2395203	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on plasmacytoid Dendritic Cell	2,872 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs2395203-G	0.0565	3E-13		0.4964	[0.36-0.63] unit increase	Illumina [17926607] (imputed)	N
613	chr6_qbl_hap6	3712960	3712961	rs2395205	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on Dendritic Cell	2,871 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs2395205-G	0.04986	7E-10		0.4528	[0.31-0.6] unit increase	Illumina [17926566] (imputed)	N
613	chr6_qbl_hap6	3713051	3713052	rs1974459	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	6p21.32		rs1974459-G	0.068544	5E-19		0.040665817	[0.032-0.05] unit increase	Affymetrix [93095623] (imputed)	N
613	chr6_qbl_hap6	3713111	3713112	rs1557550	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	6p21.32		rs1557550-T	0.0574940000000001	7E-28		0.0534048	[0.044-0.063] unit increase	Affymetrix [93095623] (imputed)	N
613	chr6_qbl_hap6	3713316	3713317	rs2395209	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Receptor for advanced glycosylation end products levels	21,758 European ancestry individuals	9,173 individuals	6p21.32		rs2395209-T	0.16	1E-17		0.1071	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
613	chr6_qbl_hap6	3713379	3713380	rs28599891	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	6p21.32	intergenic	rs28599891-G	0.7051	5E-14		0.03041702	[0.023-0.038] unit increase	Affymetrix [~ 2500000] (imputed)	N
613	chr6_qbl_hap6	3713496	3713497	rs28368843	33119750	Vergara C	2020-10-29	J Infect Dis	A multi-ancestry sex stratified genome-wide association study of spontaneous clearance of hepatitis C virus.	Hepatitis C (spontaneous viral clearance)	239 African ancestry male cases, 1,184 African ancestry male controls, 206 African ancestry female cases, 572 African ancestry female controls, 489 European ancestry male cases, 703 European ancestry male controls, 212 European ancestry female cases, 332 European ancestry female controls, 91 Hispanic male cases, 197 Hispanic male controls, 82 Hispanic female cases, 116 Hispanic female controls	NA	6p21.32	NR	rs28368843-T	0.07	5E-7	(female)	2.38	[NR]	Illumina [5730693] (imputed)	N
613	chr6_qbl_hap6	3713511	3713512	rs28453249	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	HLA-DRB9	rs28453249-T	NR	2E-13		0.021088	[0.015-0.027] unit increase	Affymetrix [321114] (imputed)	N
613	chr6_qbl_hap6	3713535	3713536	rs28561769	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p21.32	NR	rs28561769-G	0.459185	3E-228				Affymetrix, Illumina [23114412] (imputed)	N
613	chr6_qbl_hap6	3714100	3714101	rs6916742	26819262	Zhou Y	2016-01-27	Mult Scler	Genetic loci for Epstein-Barr virus nuclear antigen-1 are associated with risk of multiple sclerosis.	Epstein Barr virus nuclear antigen 1 IgG levels	1,243 parents and up to 2,356 children from 992 families, 1,956 Mexican American individuals		6p21.32	HLA-DRA, HLA-DRB5, HLA-DQA1, HLA-DRB1	rs6916742-C	0.569	6E-6	(non-Mexican American children)	0.16	unit decrease	Illumina [up to 2428201] (imputed)	N
613	chr6_qbl_hap6	3714180	3714181	rs138024423	33589587	Sakaue S	2021-02-15	Nat Commun	Genetic determinants of risk in autoimmune pulmonary alveolar proteinosis.	Autoimmune pulmonary alveolar proteinosis	198 Japanese ancestry cases, 395 Japanese ancestry controls	NA	6p21.32		rs138024423-G	0.072	2E-12		5.2	[3.3-8.2]	Illumina [12153232] (imputed)	N
613	chr6_qbl_hap6	3714499	3714500	rs76733997	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DRB9	rs76733997-A	NR	3E-13		0.0290897	[0.021-0.037] unit decrease	Affymetrix [323858] (imputed)	N
613	chr6_qbl_hap6	3714762	3714763	rs112112734	31596875	Traylor M	2019-10-09	PLoS One	Genetic associations with radiological damage in rheumatoid arthritis: Meta-analysis of seven genome-wide association studies of 2,775 cases.	Joint damage in rheumatoid arthritis	2,527 European ancestry individuals, 196 African ancestry individuals, 52 individuals	NA	6p21.32	HLA-DRB5, HLA-DRB6, HLA-DRB1	rs112112734-?	NR	4E-8				Affymetrix, Illumina [4802696] (imputed)	N
613	chr6_qbl_hap6	3714762	3714763	rs112112734	31596875	Traylor M	2019-10-09	PLoS One	Genetic associations with radiological damage in rheumatoid arthritis: Meta-analysis of seven genome-wide association studies of 2,775 cases.	Joint damage in rheumatoid arthritis	2,527 European ancestry individuals	NA	6p21.32	intergenic	rs112112734-?	NR	9E-8				Affymetrix, Illumina [2723488] (imputed)	N
613	chr6_qbl_hap6	3714845	3714846	rs112062732	32723749	Kwon YC	2020-07-28	Ann Rheum Dis	Genome-wide association study in a Korean population identifies six novel susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis	4,068 Korean ancestry cases, 36,487 Korean ancestry controls	NA	6p21.32	HLA-DRB1	rs112062732-?		6E-227		2.44	[2.31-2.58]	Illumina [NR] (imputed)	N
613	chr6_qbl_hap6	3714845	3714846	rs112062732	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	6p21.32	intergenic	rs112062732-C	0.4128	3E-30		0.04384147	[0.036-0.051] unit increase	Affymetrix [~ 2500000] (imputed)	N
613	chr6_qbl_hap6	3715198	3715199	rs75219938	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs75219938-T	0.299	7E-13	(Rac GTPase-activating protein 1, RACGAP1.13587.10.3)	0.22	[0.16-0.28] unit decrease	Affymetrix [10572788] (imputed)	N
613	chr6_qbl_hap6	3715198	3715199	rs75219938	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs75219938-T	0.299	4E-49	(HLA class II histocompatibility antigen, DQ alpha 2 chain, HLA.DQA2.7757.5.3)	0.45	[0.39-0.51] unit increase	Affymetrix [10572788] (imputed)	N
613	chr6_qbl_hap6	3736830	3736831	rs78533241	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DRB5	rs78533241-A	NR	2E-18		0.0263079	[0.02-0.032] unit decrease	Affymetrix [323123] (imputed)	N
613	chr6_qbl_hap6	3736912	3736913	rs7747236	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6p21.32	HLA-DRB5	rs7747236-T	0.136236	2E-9		0.032500744	[0.022-0.043] unit increase	Affymetrix [93095623] (imputed)	N
613	chr6_qbl_hap6	3737701	3737702	rs68174286	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR+ T cell Absolute Count	3,580 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs68174286-T	0.3045	7E-13		0.3263	[0.24-0.41] unit increase	Illumina [18377392] (imputed)	N
613	chr6_qbl_hap6	3738348	3738349	rs541803504	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs541803504-T	0.176	4E-26	(Complement C4, C4A.C4B.4481.34.2)	0.38	[0.3-0.46] unit increase	Affymetrix [10572788] (imputed)	N
613	chr6_qbl_hap6	3747996	3747997	rs67382147	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Intraocular pressure	101,939 European ancestry cases	NA	6p21.32	NR	rs67382147-G		4E-8		0.11	[0.071-0.149] unit increase	NR [NR]	N
613	chr6_qbl_hap6	3748253	3748254	rs78316776	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	6p21.32	intergenic	rs78316776-T	NR	2E-6				Illumina [up to 11995908] (imputed)	N
613	chr6_qbl_hap6	3749978	3749979	rs72492309	30898391	Lawrenson K	2019-03-19	Gynecol Oncol	Genome-wide association studies identify susceptibility loci for epithelial ovarian cancer in east Asian women.	Epithelial ovarian cancer	3,238 East Asian ancestry cases, 4,083 East Asian ancestry controls	NA	6p21.32		rs72492309-?	NR	2E-6	(serous)	1.27		Illumina [11595112] (imputed)	N
613	chr6_qbl_hap6	3750430	3750431	rs182908437	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.32	intergenic	rs182908437-?		3E-11		1.1494253	[1.1-1.2]	Affymetrix, Illumina [NR]	N
613	chr6_qbl_hap6	3755549	3755550	rs111945767	26562150	Seldin MF	2015-10-10	Mol Med	Genome-wide Association Study of Late-Onset Myasthenia Gravis: Confirmation of TNFRSF11A, and Identification of ZBTB10 and Three Distinct HLA Associations.	Late-onset myasthenia gravis	532 European ancestry cases, 2,128 European ancestry controls	NA	6p21.32	MHC_Class II	rs111945767-G	0.38	3E-17		1.923077	[1.64-2.27]	Illumina [6175472] (imputed)	N
613	chr6_qbl_hap6	3756940	3756941	rs138453460	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	6p21.32		rs138453460-G	0.942891	1E-8		0.0549043	[0.036-0.074] unit increase	NR [11722792] (imputed)	N
613	chr6_qbl_hap6	3757522	3757523	rs28490179	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	RNU1-61P	rs28490179-C	NR	1E-9		0.0229135	[0.016-0.03] unit increase	Affymetrix [321016] (imputed)	N
613	chr6_qbl_hap6	3759407	3759408	rs3828840	23472185	Mero IL	2013-03-05	PLoS One	Oligoclonal band status in Scandinavian multiple sclerosis patients is associated with specific genetic risk alleles.	Multiple sclerosis (OCB status)	1,367 European ancestry OCB positive cases, 161 European ancestry OCB negative cases, 428 European ancestry controls	NA	6p21.32	HLA-DRB1	rs3828840-?	NR	5E-15	(OCB positive vs. controls)	1.94	[1.64-2.29]	Illumina [495970]	N
613	chr6_qbl_hap6	3760646	3760647	rs35467127	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DRB6	rs35467127-T	NR	1E-13		0.0263989	[0.019-0.033] unit increase	Affymetrix [319769] (imputed)	N
613	chr6_qbl_hap6	3760646	3760647	rs35467127	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DRB6	rs35467127-T	NR	2E-13		0.0262282	[0.019-0.033] unit increase	Affymetrix [319769] (imputed)	N
613	chr6_qbl_hap6	3760646	3760647	rs35467127	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DRB6	rs35467127-T	NR	1E-10		0.0232493	[0.016-0.03] unit increase	Affymetrix [321169] (imputed)	N
613	chr6_qbl_hap6	3760646	3760647	rs35467127	33549134	Adolphe C	2021-02-06	Genome Med	Genetic and functional interaction network analysis reveals global enrichment of regulatory T cell genes influencing basal cell carcinoma susceptibility.	Basal cell carcinoma	17,416 European ancestry cases, 375,455 European ancestry controls	NA	6p21.32	HLA-DRB6	rs35467127-T	0.190482	7E-12		0.09424036	[0.067-0.121] unit increase	Affymetrix [7260263] (imputed)	N
613	chr6_qbl_hap6	3778920	3778921	rs576084184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-3 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	6p21.32		rs576084184-C	0.879346	4E-8		0.0410099	[0.026-0.056] unit decrease	NR [11722792] (imputed)	N
613	chr6_qbl_hap6	3779289	3779290	rs75380949	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	6p21.32	HLA-DRB6	rs75380949-T	NR	4E-33		1.208	[1.18-1.24]	Affymetrix [9000000] (imputed)	N
613	chr6_qbl_hap6	3780083	3780084	rs41293330	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.32	HLA-DRB1, HLA-DRB5, HLA-DRB6	rs41293330-T		2E-9		1.09	[1.06-1.12]	Affymetrix, Illumina [NR]	N
613	chr6_qbl_hap6	3781128	3781129	rs115231074	26450422	DeLorenze GN	2015-10-08	J Infect Dis	Polymorphisms in HLA Class II Genes Are Associated With Susceptibility to Staphylococcus aureus Infection in a White Population.	Staphylococcus aureus infection	4,701 European ancestry cases, 45,344 European ancestry controls	NA	6p21.32	HLA-DRB1	rs115231074-T	NR	1E-10		1.22	[NR]	Affymetrix [at least 584535] (imputed)	N
613	chr6_qbl_hap6	3781128	3781129	rs115231074	26450422	DeLorenze GN	2015-10-08	J Infect Dis	Polymorphisms in HLA Class II Genes Are Associated With Susceptibility to Staphylococcus aureus Infection in a White Population.	Skin and soft tissue Staphylococcus aureus infection	2,130 European ancestry cases, 45,434 European ancestry controls	NA	6p21.32	HLA-DRB1	rs115231074-T	NR	5E-8		1.28	[NR]	Affymetrix [at least 584535] (imputed)	N
613	chr6_qbl_hap6	3781381	3781382	rs9269511	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p21.32		rs9269511-C	0.158	1E-16				Affymetrix [10369434] (imputed)	N
613	chr6_qbl_hap6	3781659	3781660	rs41294271	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.32	HLA-DRB1	rs41294271-?		3E-8		1.1111112	[1.06-1.15]	Affymetrix, Illumina [NR]	N
613	chr6_qbl_hap6	3782203	3782204	rs115468973	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	6p21.32	HLA-DRB6	rs115468973-T	NR	3E-23		1.267	[1.22-1.31]	Affymetrix [9000000] (imputed)	N
613	chr6_qbl_hap6	3782774	3782775	rs9269573	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs9269573-A	0.861	6E-29	(GDH/6PGL endoplasmic bifunctional protein, H6PD.7161.25.3)	0.39	[0.31-0.47] unit decrease	Affymetrix [10572788] (imputed)	N
613	chr6_qbl_hap6	3783439	3783440	rs35511257	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	6p21.32	HLA-DRB1	rs35511257-C	0.0956	7E-10		0.003	[0.002-0.004] unit decrease	Affymetrix [15275733] (imputed)	N
613	chr6_qbl_hap6	3783444	3783445	rs34363414	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs34363414-T	0.15	4E-27	(Ubiquitin carboxyl-terminal hydrolase 25, USP25.9215.117.3)	0.39	[0.31-0.47] unit increase	Affymetrix [10572788] (imputed)	N
613	chr6_qbl_hap6	3783444	3783445	rs34363414	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs34363414-T	0.15	1E-33	(Complement C4, C4A.C4B.4481.34.2)	0.43	[0.35-0.51] unit increase	Affymetrix [10572788] (imputed)	N
613	chr6_qbl_hap6	3784719	3784720	rs1064713	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	6p21.32	HLA-DRB6	rs1064713-A	NR	1E-25		1.205	[1.17-1.24]	Affymetrix [9000000] (imputed)	N
613	chr6_qbl_hap6	3785250	3785251	rs9256938	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs9256938-A	0.737	2E-12	(Complement factor B, CFB.4129.72.1)	0.23	[0.17-0.29] unit increase	Affymetrix [10572788] (imputed)	N
613	chr6_qbl_hap6	3786250	3786251	rs1059362	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs1059362-A	0.17	7E-35	(Complement C4, C4A.C4B.4481.34.2)	0.45	[0.37-0.53] unit increase	Affymetrix [10572788] (imputed)	N
613	chr6_qbl_hap6	3786618	3786619	rs149717632	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Antisaccade task score	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	6p21.32	HLA-DRB1	rs149717632-G	NR	3E-6		0.15448512	[0.094-0.215] unit decrease	Illumina [> 6200000] (imputed)	N
613	chr6_qbl_hap6	3787199	3787200	rs707954	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6p21.32	NR	rs707954-A	0.3039	1E-13		1.062	[1.046-1.078]	Affymetrix [15688218] (imputed)	N
613	chr6_qbl_hap6	3787229	3787230	rs112796209	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	6p21.32	NR	rs112796209-?	NR	1E-10				Affymetrix [~ 8270000] (imputed)	N
613	chr6_qbl_hap6	3787574	3787575	rs41293179	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.32	HLA-DRB1, HLA-DRB5, HLA-DRB6	rs41293179-?		2E-11		1.1111112	[1.08-1.14]	Affymetrix, Illumina [NR]	N
613	chr6_qbl_hap6	3787610	3787611	rs142790902	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.32	HLA-DRB1	rs142790902-T		1E-11		1.22	[1.15-1.29]	Affymetrix, Illumina [NR]	N
613	chr6_qbl_hap6	3787802	3787803	rs35789108	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs35789108-?	NR	2E-23				Affymetrix [~ 8270000] (imputed)	N
613	chr6_qbl_hap6	3787999	3788000	rs9269853	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease (late onset)	24,087 European ancestry cases, 55,058 European ancestry controls	NA	6p21.32	HLA-DRB1	rs9269853-A	NR	3E-8		5.5623274	NR z-score increase	Illumina [up to 9862738] (imputed)	N
613	chr6_qbl_hap6	3789379	3789380	rs144660248	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.32	HLA-DRB1, HLA-DRB5, HLA-DRB6	rs144660248-?		6E-13		1.1764705	[1.12-1.23]	Affymetrix, Illumina [NR]	N
613	chr6_qbl_hap6	3789735	3789736	rs17882603	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	6p21.32	NR	rs17882603-T	0.465812	3E-11		0.0493398	[0.035-0.064] unit decrease	Affymetrix [17914406] (imputed)	N
613	chr6_qbl_hap6	3789763	3789764	rs17885382	25987655	Fernandez CA	2015-05-18	Blood	Genome-wide analysis links NFATC2 with asparaginase hypersensitivity.	Asparaginase hypersensitivity in acute lymphoblastic leukemia	3,126 child cases	182 child cases	6p21.32	HLA-DRB1	rs17885382-T		3E-6		1.627		Affymetrix [NR]	N
613	chr6_qbl_hap6	3790119	3790120	rs11753207	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.32	HLA-DRB1, HLA-DRB5, HLA-DRB6	rs11753207-A		3E-11		1.1	[1.07-1.13]	Affymetrix, Illumina [NR]	N
613	chr6_qbl_hap6	3790417	3790418	rs9270000	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total concentration of lipoprotein particles	115,082 European ancestry individuals	NA	6p21.32		rs9270000-G	0.57364	1E-11		0.030461	[0.022-0.039] unit decrease	NR [11722792] (imputed)	N
613	chr6_qbl_hap6	3790417	3790418	rs9270000	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small HDL particles	115,082 European ancestry individuals	NA	6p21.32		rs9270000-G	0.57364	2E-17		0.0405784	[0.031-0.05] unit decrease	NR [11722792] (imputed)	N
613	chr6_qbl_hap6	3790417	3790418	rs9270000	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small HDL	115,082 European ancestry individuals	NA	6p21.32		rs9270000-G	0.57364	2E-14		0.0365295	[0.027-0.046] unit decrease	NR [11722792] (imputed)	N
613	chr6_qbl_hap6	3790417	3790418	rs9270000	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small HDL	115,082 European ancestry individuals	NA	6p21.32		rs9270000-G	0.57364	4E-16		0.0387141	[0.029-0.048] unit decrease	NR [11722792] (imputed)	N
613	chr6_qbl_hap6	3800529	3800530	rs34415150	33510174	Jones G	2021-01-28	Nat Commun	Genome-wide meta-analysis of muscle weakness identifies 15 susceptibility loci in older men and women.	Low hand grip strength (60 years and older) (FNIH)	20,335 European ancestry cases, 236,188 European ancestry controls	NA	6p21.32	HLA-DRB1	rs34415150-G	0.18	6E-16		0.1158	unit increase	Affymetrix, Illumina [9465622] (imputed)	N
613	chr6_qbl_hap6	3800529	3800530	rs34415150	33510174	Jones G	2021-01-28	Nat Commun	Genome-wide meta-analysis of muscle weakness identifies 15 susceptibility loci in older men and women.	Low hand grip strength (60 years and older) (EWGSOP)	48,596 European ancestry cases, 207,927 European ancestry controls	NA	6p21.32	HLA-DRB1	rs34415150-A	0.822	4E-17		0.0833	[0.064-0.103] unit decrease	Affymetrix, Illumina [9457422] (imputed)	N
613	chr6_qbl_hap6	3800529	3800530	rs34415150	33510174	Jones G	2021-01-28	Nat Commun	Genome-wide meta-analysis of muscle weakness identifies 15 susceptibility loci in older men and women.	Low hand grip strength (60 years and older) (EWGSOP)	34,589 European ancestry female cases, 100,879 European ancestry female controls	NA	6p21.32	HLA-DRB1	rs34415150-G	0.18	1E-16		0.1001	unit increase	Affymetrix, Illumina [9449805] (imputed)	N
613	chr6_qbl_hap6	3800529	3800530	rs34415150	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	6p21.32	NR	rs34415150-A	0.815874	2E-52		0.0399601	[0.035-0.045] unit decrease	NR [NR]	N
613	chr6_qbl_hap6	3800683	3800684	rs35118762	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (immunosuppressants)	3,954 European ancestry cases, 268,648 European ancestry controls, 3,483 East Asian ancestry cases, 175,243 East Asian ancestry controls	NA	6p21.32		rs35118762-T	NR	1E-120		0.4878	[0.45-0.53] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
613	chr6_qbl_hap6	3800804	3800805	rs7768875	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on IgD+ CD38+ B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs7768875-T	0.47719	3E-8		0.1706	[0.11-0.23] unit decrease	Illumina [18238311] (imputed)	N
613	chr6_qbl_hap6	3800823	3800824	rs2760975	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	6p21.32	HLA-DRB1	rs2760975-A	0.168	5E-12		0.003	[0.0022-0.0038] unit decrease	Affymetrix [15275733] (imputed)	N
613	chr6_qbl_hap6	3800823	3800824	rs2760975	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	223,215 British ancestry individuals	111,610 British ancestry individuals	6p21.32	HLA-DRB1	rs2760975-A	0.17	1E-9		0.003	[0.002-0.004] unit decrease	Affymetrix [15275733] (imputed)	N
613	chr6_qbl_hap6	3800881	3800882	rs28366297	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	6p21.32		rs28366297-C	0.30822	1E-6		0.035757	[0.021-0.05] unit increase	Affymetrix [15580782] (imputed)	N
613	chr6_qbl_hap6	3800922	3800923	rs28366299	33143745	Andlauer TFM	2020-11-04	BMC Med	Treatment- and population-specific genetic risk factors for anti-drug antibodies against interferon-beta: a GWAS.	Neutralising antibody response to interferon beta therapy in multiple sclerosis (presence of antibodies; IFN?-1b subcutaneous)	up to 2,000 German and Swedish ancestry individuals	up to 757 German and Swedish ancestry individuals	6p21.32		rs28366299-A	0.19	7E-19		1.27	[1.0-1.54] unit increase	Illumina [8550834] (imputed)	N
613	chr6_qbl_hap6	3800935	3800936	rs28366301	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	High density lipoprotein cholesterol levels	70,657 Japanese ancestry individuals	NA	6p21.32	HLA-DRB1, HLA-DQA1	rs28366301-?	NR	8E-11		0.03687	[0.026-0.048] unit increase novel	Illumina [6108953] (imputed)	N
614	chr6_qbl_hap6	3801119	3801120	rs9270576	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	78,744 East Asian ancestry individuals	NA	6p21.32	NR	rs9270576-C	0.620915	3E-28		0.071855	[0.059-0.085] SD units increase	Affymetrix, Illumina [16289093] (imputed)	N
614	chr6_qbl_hap6	3801334	3801335	rs35525122	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on myeloid Dendritic Cell	2,872 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs35525122-A	0.10869	1E-65		0.8525	[0.76-0.95] unit increase	Illumina [17926605] (imputed)	N
614	chr6_qbl_hap6	3801351	3801352	rs9270585	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on CD14+ monocyte	3,629 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9270585-T	0.5757300000000001	6E-92		0.5871	[0.53-0.64] unit decrease	Illumina [18218967] (imputed)	N
614	chr6_qbl_hap6	3801351	3801352	rs9270585	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on CD14+ CD16- monocyte	3,629 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9270585-T	0.5757300000000001	3E-98		0.6054	[0.55-0.66] unit decrease	Illumina [18218967] (imputed)	N
614	chr6_qbl_hap6	3801378	3801379	rs9270588	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on monocyte	3,629 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9270588-T	0.5771	3E-78		0.5388	[0.48-0.59] unit decrease	Illumina [18218967] (imputed)	N
614	chr6_qbl_hap6	3801378	3801379	rs9270588	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on CD33+ HLA DR+ CD14dim	1,578 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9270588-T	0.43503	8E-26		0.4302	[0.35-0.51] unit decrease	Illumina [16958370] (imputed)	N
614	chr6_qbl_hap6	3801378	3801379	rs9270588	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on CD33+ HLA DR+ CD14-	1,579 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9270588-T	0.43507	2E-49		0.5992	[0.52-0.68] unit decrease	Illumina [16961968] (imputed)	N
614	chr6_qbl_hap6	3801421	3801422	rs35139284	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Rheumatoid arthritis	8,255 European ancestry cases, 409,001 European ancestry controls, 5,348 East Asian ancestry cases, 173,268 East Asian ancestry controls	NA	6p21.32		rs35139284-T	NR	4E-287		0.5387	[0.51-0.57] unit increase	Affymetrix, Illumina [25835038] (imputed)	N
614	chr6_qbl_hap6	3801421	3801422	rs35139284	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DRB1	rs35139284-T	NR	4E-17		0.0253723	[0.019-0.031] unit increase	Affymetrix [319769] (imputed)	N
614	chr6_qbl_hap6	3801421	3801422	rs35139284	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DRB1	rs35139284-T	NR	8E-11		0.0218487	[0.015-0.028] unit increase	Affymetrix [323858] (imputed)	N
614	chr6_qbl_hap6	3801421	3801422	rs35139284	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DRB1	rs35139284-T	NR	1E-16		0.0250062	[0.019-0.031] unit increase	Affymetrix [319769] (imputed)	N
614	chr6_qbl_hap6	3801421	3801422	rs35139284	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	HLA-DRB1	rs35139284-T	NR	4E-10		0.0210099	[0.014-0.028] unit increase	Affymetrix [127266] (imputed)	N
614	chr6_qbl_hap6	3801421	3801422	rs35139284	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	HLA-DRB1	rs35139284-T	NR	1E-8		0.0174619	[0.011-0.023] unit increase	Affymetrix [321114] (imputed)	N
614	chr6_qbl_hap6	3801421	3801422	rs35139284	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DRB1	rs35139284-T	NR	5E-16		0.0247016	[0.019-0.031] unit increase	Affymetrix [321169] (imputed)	N
614	chr6_qbl_hap6	3801421	3801422	rs35139284	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	6p21.32	HLA-DRB1, HLA-DQA1	rs35139284-T	0.32	7E-23		9.85	z-score increase	Affymetrix [4311822] (imputed)	N
614	chr6_qbl_hap6	3801421	3801422	rs35139284	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on B cell	3,660 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs35139284-T	0.40599	4E-10		0.183	[0.13-0.24] unit increase	Illumina [18238700] (imputed)	N
614	chr6_qbl_hap6	3801426	3801427	rs201291779	34108613	Ivarsdottir EV	2021-06-09	Commun Biol	The genetic architecture of age-related hearing impairment revealed by genome-wide association analysis.	Age-related hearing impairment	121,934 European ancestry cases, 591,699 European ancestry controls	NA	6p21.32	HLA-DRB1	rs201291779-T	1.58	5E-14	(additive)	1.15	[NR]	Affymetrix, Illumina [46900000] (imputed)	N
614	chr6_qbl_hap6	3801475	3801476	rs9270591	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Monocytic Myeloid-Derived Suppressor Cells Absolute Count	1,855 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9270591-T	0.43396	5E-26		0.4161	[0.34-0.49] unit increase	Illumina [17197940] (imputed)	N
614	chr6_qbl_hap6	3801475	3801476	rs9270591	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR++ monocyte %leukocyte	3,595 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9270591-T	0.5705100000000001	7E-18		0.2715	[0.21-0.33] unit decrease	Illumina [18380843] (imputed)	N
614	chr6_qbl_hap6	3801475	3801476	rs9270591	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on Hematopoietic Stem Cell	1,634 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9270591-T	0.43702	3E-48		0.5658	[0.49-0.64] unit decrease	Illumina [16999215] (imputed)	N
614	chr6_qbl_hap6	3801708	3801709	rs9270599	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on B cell	3,060 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9270599-A	0.62618	3E-65		0.5573	[0.49-0.62] unit increase	Illumina [18012789] (imputed)	N
614	chr6_qbl_hap6	3802314	3802315	rs28366348	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	6p21.32		rs28366348-A	0.728713	1E-9		0.0290399	[0.02-0.038] unit increase	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3802385	3802386	rs35372932	35023831	Chong M	2022-01-13	Elife	GWAS and ExWAS of blood Mitochondrial DNA copy number identifies 71 loci and highlights a potential causal role in dementia.	Mitochondrial DNA copy number	395,718 British, Irish, Other White, South Asian, African ancestry individuals	NA	6p21.32	NR	rs35372932-T	0.170327	4E-9		0.0251	[0.017-0.034] unit decrease	Affymetrix [23037915] (imputed)	N
614	chr6_qbl_hap6	3802537	3802538	rs28366357	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DRB1	rs28366357-T	NR	4E-11		0.0208439	[0.015-0.027] unit decrease	Affymetrix [323123] (imputed)	N
614	chr6_qbl_hap6	3802600	3802601	rs2760980	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on CD33- HLA DR+	1,635 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs2760980-A	0.10748	2E-60		1.049	[0.93-1.17] unit increase	Illumina [16999305] (imputed)	N
614	chr6_qbl_hap6	3802612	3802613	rs28366362	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.32		rs28366362-C	0.409768	4E-26		0.029002981	[0.024-0.034] unit increase	Affymetrix [93095623] (imputed)	N
614	chr6_qbl_hap6	3802864	3802865	rs2760981	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.32	BTNL2, C6orf10, HCG23, HLA-DQA1, HLA-DRA, HLA-DRB1, HLA-DRB5, HLA-DRB6	rs2760981-?		4E-11		1.0752687	[1.05-1.1]	Affymetrix, Illumina [NR]	N
614	chr6_qbl_hap6	3802932	3802933	rs9270632	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.32		rs9270632-G	0.676	3E-48				Affymetrix [10369434] (imputed)	N
614	chr6_qbl_hap6	3803077	3803078	rs9270637	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs9270637-G	0.293	9E-20	(Complement C4, C4A.C4B.4481.34.2)	0.24	[0.18-0.3] unit decrease	Affymetrix [10572788] (imputed)	N
614	chr6_qbl_hap6	3803079	3803080	rs28383169	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	6p21.32		rs28383169-G	0.44037	4E-19		0.0246375	[0.019-0.03] unit decrease	Illumina [13479924] (imputed)	N
614	chr6_qbl_hap6	3803192	3803193	rs117726495	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs affecting bone structure and mineralization)	7,870 European ancestry cases, 207,798 European ancestry controls, 6,143 East Asian ancestry cases, 172,583 East Asian ancestry controls	NA	6p21.32		rs117726495-A	NR	8E-16		0.2102	[0.16-0.26] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
614	chr6_qbl_hap6	3803232	3803233	rs9270647	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DRB1	rs9270647-C	NR	9E-12		0.0207928	[0.015-0.027] unit decrease	Affymetrix [319769] (imputed)	N
614	chr6_qbl_hap6	3803232	3803233	rs9270647	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DRB1	rs9270647-C	NR	2E-12		0.0216513	[0.016-0.028] unit decrease	Affymetrix [321169] (imputed)	N
614	chr6_qbl_hap6	3803522	3803523	rs2647078	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs2647078-C	0.806	9E-21		0.803	[0.76-0.85]	Illumina [11270530] (imputed)	N
614	chr6_qbl_hap6	3804003	3804004	rs4329147	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	6p21.32	HLA-DRB1	rs4329147-T	0.83	1E-11		1.11	[1.09-1.13]	Illumina [at least 560000] (imputed)	N
614	chr6_qbl_hap6	3804003	3804004	rs4329147	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	6p21.32	HLA-DRB5, HLA-DQA1	rs4329147-?	NR	1E-11		1.111	[1.078-1.146]	Illumina [13754664] (imputed)	N
614	chr6_qbl_hap6	3804687	3804688	rs687308	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (immunosuppressants)	3,954 European ancestry cases, 268,648 European ancestry controls	NA	6p21.32	HLA-DRB1	rs687308-T	0.191895	2E-84		0.5610923	[0.5-0.62] unit increase	Affymetrix [7288503] (imputed)	N
614	chr6_qbl_hap6	3805567	3805568	rs7450706	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	6p21.32		rs7450706-T	0.046397	4E-13		0.040589344	[0.03-0.052] unit decrease	Affymetrix [93095623] (imputed)	N
614	chr6_qbl_hap6	3805720	3805721	rs9270747	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)(bidirectional)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs9270747-A	NR	2E-32				Affymetrix [7846216] (imputed)	N
614	chr6_qbl_hap6	3805774	3805775	rs9270750	26956414	Berndt SI	2016-03-09	Nat Commun	Meta-analysis of genome-wide association studies discovers multiple loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	3,100 European ancestry cases, 7,667 European ancestry controls	1,958 cases,  5,530 controls	6p21.32	HLA-DQB1, HLA-DRB1, HLA-DRB5	rs9270750-A	0.543	6E-16		1.32	[1.23-1.41]	Affymetrix, Illumina [~ 8500000] (imputed)	N
614	chr6_qbl_hap6	3806498	3806499	rs9270779	29769521	Ramirez J	2018-05-16	Nat Commun	Thirty loci identified for heart rate response to exercise and recovery implicate autonomic nervous system.	Heart rate response to exercise	up to 35,455 European ancestry females, up to 31,802 European ancestry males	NA	6p21.32	HLA-DRB5, HLA-DRB1	rs9270779-T	0.323	1E-8	(females)	0.538	[0.35-0.72] bpm decrease	Affymetrix [~ 7800000] (imputed)	N
614	chr6_qbl_hap6	3806745	3806746	rs9270798	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DRB1	rs9270798-A	NR	2E-8		0.0191935	[0.013-0.026] unit decrease	Affymetrix [319769] (imputed)	N
614	chr6_qbl_hap6	3806897	3806898	rs140177540	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p21.32	HLA-DRB1	rs140177540-?	0.47	5E-15		1.06	[1.05-1.07]	Illumina [at least 560000] (imputed)	N
614	chr6_qbl_hap6	3807134	3807135	rs477515	25817017	Carmona FD	2015-03-26	Am J Hum Genet	A large-scale genetic analysis reveals a strong contribution of the HLA class II region to giant cell arteritis susceptibility.	Giant cell arteritis	1,651 European ancestry cases, 15,306 European ancestry controls	NA	6p21.32	HLA-DRB1, HLA-DQA1	rs477515-?		4E-40		1.73	[1.59-1.87]	Illumina [95416]	N
614	chr6_qbl_hap6	3807134	3807135	rs477515	24282030	Pan L	2013-11-28	Hum Mol Genet	A genome-wide association study identifies polymorphisms in the HLA-DR region associated with non-response to hepatitis B vaccination in Chinese Han populations.	Hepatitis B vaccine response	108 Han Chinese ancestry high-responder cases, 77 Han Chinese ancestry non-responder controls	1,336 Han Chinese ancestry high-responder cases, 420 Han Chinese ancestry non-responder controls	6p21.32	HLA-DRA, BTNL2, HLA-DRB1, C6orf10	rs477515-T	0.442	3E-19		2.05	[1.75-2.41]	Illumina [588026]	N
614	chr6_qbl_hap6	3807134	3807135	rs477515	23326239	Rubicz R	2013-01-10	PLoS Genet	A genome-wide integrative genomic study localizes genetic factors influencing antibodies against Epstein-Barr virus nuclear antigen 1 (EBNA-1).	Epstein-Barr virus immune response (EBNA-1)	1,367 Mexican American indivduals	589 Mexican American indivduals	6p21.32	HLA-DRB1	rs477515-T	0.32	3E-13	(Quantitative)	0.28	[NR] unit decrease	Illumina [944565]	N
614	chr6_qbl_hap6	3807134	3807135	rs477515	18758464	Kugathasan S	2008-08-31	Nat Genet	Loci on 20q13 and 21q22 are associated with pediatric-onset inflammatory bowel disease.	Inflammatory bowel disease	1,011 European ancestry cases, 4,250 European ancestry controls	1,922 European ancestry cases, 14,124 European ancestry controls	6p21.32	HLA-DQA1	rs477515-?	0.69	1E-8		1.38	[1.23-1.54]	Illumina [NR]	N
614	chr6_qbl_hap6	3807373	3807374	rs116763083	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	HLA-DRB1	rs116763083-A	0.026	4E-16	(C-C motif chemokine 19, CCL19.4922.13.1)	0.63	[0.47-0.79] unit increase	Affymetrix [10572788] (imputed)	N
614	chr6_qbl_hap6	3807751	3807752	rs34039593	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on plasmacytoid Dendritic Cell	2,872 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs34039593-G	0.11165	6E-146		1.217	[1.13-1.3] unit increase	Illumina [17926607] (imputed)	N
614	chr6_qbl_hap6	3807751	3807752	rs34039593	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on Dendritic Cell	2,871 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs34039593-G	0.11169	4E-110		1.075	[0.98-1.17] unit increase	Illumina [17926566] (imputed)	N
614	chr6_qbl_hap6	3807751	3807752	rs34039593	29534301	Nishida N	2018-03-13	Hepatology	Key HLA-DRB1-DQB1 haplotypes and role of the BTNL2 gene for response to a hepatitis B vaccine.	Response to hepatitis B vaccine	107 Japanese ancestry low responder individuals, 351 Japanese ancestry intermediate responder individuals, 735 Japanese ancestry high responder individuals	NA	6p21.32	HLA-DQA1	rs34039593-?		6E-12		0.2	unit increase	Affymetrix [427664]	N
614	chr6_qbl_hap6	3807840	3807841	rs2516049	31596875	Traylor M	2019-10-09	PLoS One	Genetic associations with radiological damage in rheumatoid arthritis: Meta-analysis of seven genome-wide association studies of 2,775 cases.	Joint damage in rheumatoid arthritis	2,527 European ancestry individuals	NA	6p21.32	intergenic	rs2516049-?	NR	3E-6	(adjusted for rheumatoid factor)			Affymetrix, Illumina [2723488] (imputed)	N
614	chr6_qbl_hap6	3807840	3807841	rs2516049	31375628	Tengvall K	2019-08-02	Proc Natl Acad Sci U S A	Molecular mimicry between Anoctamin 2 and Epstein-Barr virus nuclear antigen 1 associates with multiple sclerosis risk.	Anti-anoctamin 2 antibody levels	11,936 European ancestry individuals	NA	6p21.32	NR	rs2516049-G	NR	7E-15		0.092	[0.065-0.119] unit decrease	Illumina [615763]	N
614	chr6_qbl_hap6	3807840	3807841	rs2516049	26819262	Zhou Y	2016-01-27	Mult Scler	Genetic loci for Epstein-Barr virus nuclear antigen-1 are associated with risk of multiple sclerosis.	Epstein Barr virus nuclear antigen 1 IgG levels	1,243 parents and up to 2,356 children from 992 families, 1,956 Mexican American individuals		6p21.32	NR	rs2516049-T		6E-14	(Mexican American)	0.204	unit increase	Illumina [up to 2428201] (imputed)	N
614	chr6_qbl_hap6	3807840	3807841	rs2516049	26819262	Zhou Y	2016-01-27	Mult Scler	Genetic loci for Epstein-Barr virus nuclear antigen-1 are associated with risk of multiple sclerosis.	Epstein Barr virus nuclear antigen 1 IgG levels	1,243 parents and up to 2,356 children from 992 families, 1,956 Mexican American individuals		6p21.32	NR	rs2516049-T		4E-9	(non-Mexican American)	0.204	unit increase	Illumina [up to 2428201] (imputed)	N
614	chr6_qbl_hap6	3807840	3807841	rs2516049	26819262	Zhou Y	2016-01-27	Mult Scler	Genetic loci for Epstein-Barr virus nuclear antigen-1 are associated with risk of multiple sclerosis.	Epstein Barr virus nuclear antigen 1 IgG levels	1,243 parents and up to 2,356 children from 992 families, 1,956 Mexican American individuals		6p21.32	NR	rs2516049-T		3E-20		0.204	unit increase	Illumina [up to 2428201] (imputed)	N
614	chr6_qbl_hap6	3807841	3807842	rs2454138	29521573	Buck D	2018-03-01	Mult Scler	Effect of HLA-DRB1 alleles and genetic variants on the development of neutralizing antibodies to interferon beta in the BEYOND and BENEFIT trials.	Neutralising antibody response to interferon beta therapy in multiple sclerosis (mean antibody levels)	926 European ancestry individuals, 7 Hispanic individuals, 1 Asian ancestry individuals, 1 African ancestry individual, 4 other unknown ancestry individuals, 2 individuals	NA	6p21.32	intergenic	rs2454138-A	0.22	5E-19		0.41	[0.31-0.51] unit increase	Affymetrix [8671751] (imputed)	N
614	chr6_qbl_hap6	3807841	3807842	rs2454138	29521573	Buck D	2018-03-01	Mult Scler	Effect of HLA-DRB1 alleles and genetic variants on the development of neutralizing antibodies to interferon beta in the BEYOND and BENEFIT trials.	Neutralising antibody response to interferon beta therapy in multiple sclerosis (maximum antibody levels)	926 European ancestry individuals, 7 Hispanic individuals, 1 Asian ancestry individuals, 1 African ancestry individual, 4 other unknown ancestry individuals, 2 individuals	NA	6p21.32	intergenic	rs2454138-A	0.22	1E-18		0.41	unit increase	Affymetrix [8671751] (imputed)	N
614	chr6_qbl_hap6	3807841	3807842	rs2454138	29521573	Buck D	2018-03-01	Mult Scler	Effect of HLA-DRB1 alleles and genetic variants on the development of neutralizing antibodies to interferon beta in the BEYOND and BENEFIT trials.	Neutralising antibody response to interferon beta therapy in multiple sclerosis (area under the curve for the first two years)	926 European ancestry individuals, 7 Hispanic individuals, 1 Asian ancestry individuals, 1 African ancestry individual, 4 other unknown ancestry individuals, 2 individuals	NA	6p21.32	intergenic	rs2454138-A	0.22	8E-19		0.41	[0.31-0.51] unit increase	Affymetrix [8671751] (imputed)	N
614	chr6_qbl_hap6	3807857	3807858	rs2647062	32201043	Smeland OB	2020-02-08	Biol Psychiatry	Genome-wide Association Analysis of Parkinson's Disease and Schizophrenia Reveals Shared Genetic Architecture and Identifies Novel Risk Loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	NA	6p21.32	HLA-DRB1	rs2647062-A		6E-12		0.143	[0.1-0.18] unit increase	Illumina [NR]	N
614	chr6_qbl_hap6	3807857	3807858	rs2647062	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	148,164 European ancestry individuals	NA	6p21.32	HLA-DRB1	rs2647062-A	0.84	1E-11	(BMI-adjusted)	0.048	[0.034-0.062] unit decrease	Affymetrix, Illumina, Perlegen [10019203] (imputed)	N
614	chr6_qbl_hap6	3808010	3808011	rs558721	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD64 on CD14- CD16-	3,622 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs558721-T	0.07623	2E-8		0.3331	[0.22-0.45] unit increase	Illumina [18215199] (imputed)	N
614	chr6_qbl_hap6	3808303	3808304	rs556025	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	6p21.32		rs556025-T	0.35263	3E-8		0.039419	[0.025-0.053] unit increase	Affymetrix [15580782] (imputed)	N
614	chr6_qbl_hap6	3808403	3808409	rs749637599	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hearing loss, difficulty in hearing	14,654 European ancestry cases, 474,839 European ancestry controls, 3,400 East Asian ancestry cases, 175,326 East Asian ancestry controls	NA	6p21.32		rs749637599-G	NR	3E-12		0.174	[0.13-0.22] unit increase	Affymetrix, Illumina [25845022] (imputed)	N
614	chr6_qbl_hap6	3808742	3808743	rs9270878	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	HLA-DRB1	rs9270878-A	NR	9E-10		0.0181825	[0.012-0.024] unit decrease	Affymetrix [321114] (imputed)	N
614	chr6_qbl_hap6	3808972	3808973	rs9270891	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs9270891-G	0.159	6E-35	(Ubiquitin carboxyl-terminal hydrolase 25, USP25.9215.117.3)	0.41	[0.35-0.47] unit increase	Affymetrix [10572788] (imputed)	N
614	chr6_qbl_hap6	3809104	3809105	rs17425622	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PLXDC2	5,360 Icelandic ancestry individuals	NA	6p21.32		rs17425622-C	0.1783	1E-21		0.224277	[0.18-0.27] unit decrease	Illumina [7506463] (imputed)	N
614	chr6_qbl_hap6	3809104	3809105	rs17425622	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Parkinson's disease	9,619 European ancestry cases, 324,522 European ancestry controls	NA	6p21.32	HLA-DQA1, HLA-DRB5	rs17425622-?	NR	4E-17		1.235	[1.174-1.298]	Illumina [12438219] (imputed)	N
614	chr6_qbl_hap6	3809247	3809248	rs34102154	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Non-Hodgkin's lymphoma	2,400 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs34102154-G	NR	1E-14		1.431	NR	Affymetrix [7846216] (imputed)	N
614	chr6_qbl_hap6	3809343	3809344	rs9270911	33558538	Gebresilase T	2021-02-08	Sci Rep	Replication of HLA class II locus association with susceptibility to podoconiosis in three Ethiopian ethnic groups.	Podoconiosis	1,137 Ethiopian ancestry cases, 1,152 Ethiopian ancestry controls	NA	6p21.32	intergenic	rs9270911-T	0.44	2E-12				Illumina [2201695]	N
614	chr6_qbl_hap6	3809343	3809344	rs9270911	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs9270911-?	NR	1E-27				Affymetrix [~ 8270000] (imputed)	N
614	chr6_qbl_hap6	3810314	3810315	rs601006	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	HLA-DRB1	rs601006-A	NR	9E-10		0.0179058	[0.012-0.024] unit increase	Affymetrix [321114] (imputed)	N
614	chr6_qbl_hap6	3810548	3810549	rs601945	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	6p21.32	MHC	rs601945-G	0.1775	5E-8		1.06	[1.04-1.08]	Affymetrix, Illumina [~ 27000000] (imputed)	N
614	chr6_qbl_hap6	3810604	3810605	rs9270965	24204295	Han F	2013-10-31	PLoS Genet	Genome wide analysis of narcolepsy in China implicates novel immune loci and reveals changes in association prior to versus after the 2009 H1N1 influenza pandemic.	Narcolepsy (onset before 2009 H1N1 influenza pandemic)	up to 893 Chinese ancestry cases with onset before the 2009 H1N1 influenza pandemic, up to 373 Chinese ancestry cases with onset after the 2009 H1N1 influenza pandemic	NA	6p21.32	NR	rs9270965-?	NR	5E-12		1.72	[NR]	Affymetrix [603382]	N
614	chr6_qbl_hap6	3810707	3810708	rs9270970	32771030	Tangtanatakul P	2020-08-08	Arthritis Res Ther	Meta-analysis of genome-wide association study identifies FBN2 as a novel locus associated with systemic lupus erythematosus in Thai population.	Systemic lupus erythematosus	487 Thai cases, 1,606 Thai controls	405 Thai cases, 1,590 Thai controls	6p21.32	HLA-DRB1, HLA-DQA1	rs9270970-G	0.42	4E-26		1.8293	[NR]	Illumina [421909] (imputed)	N
614	chr6_qbl_hap6	3810761	3810762	rs144123929	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in IDL	115,082 European ancestry individuals	NA	6p21.32		rs144123929-C	0.971917	1E-8		0.0862226	[0.057-0.116] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3810762	3810763	rs602875	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DRB1	rs602875-G	NR	1E-8		0.0188152	[0.012-0.025] unit decrease	Affymetrix [319769] (imputed)	N
614	chr6_qbl_hap6	3810762	3810763	rs602875	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DRB1	rs602875-G	NR	3E-8		0.0183289	[0.012-0.025] unit decrease	Affymetrix [319769] (imputed)	N
614	chr6_qbl_hap6	3810762	3810763	rs602875	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DRB1	rs602875-G	NR	4E-9		0.0196908	[0.013-0.026] unit decrease	Affymetrix [321169] (imputed)	N
614	chr6_qbl_hap6	3810762	3810763	rs602875	20018961	Zhang FR	2009-12-16	N Engl J Med	Genomewide association study of leprosy.	Leprosy	706 Han Chinese ancestry cases, 1,225 Han Chinese ancestry controls	3,254 Chinese ancestry cases, 5,955 Chinese ancestry controls	6p21.32	HLA-DR-DQ	rs602875-A	0.68	5E-27		1.61	[1.39-1.61]	Illumina [491883]	N
614	chr6_qbl_hap6	3811050	3811051	rs2647071	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DRB1	rs2647071-T	NR	2E-8		0.0181138	[0.012-0.024] unit increase	Affymetrix [321169] (imputed)	N
614	chr6_qbl_hap6	3811132	3811133	rs9270984	23273568	Yang W	2012-12-27	Am J Hum Genet	Meta-analysis followed by replication identifies loci in or near CDKN1B, TET3, CD80, DRAM1, and ARID5B as associated with systemic lupus erythematosus in Asians.	Systemic lupus erythematosus	1,656 Han Chinese ancestry cases, 3,394 Han Chinese ancestry controls	3,256 Han Chinese ancestry cases, 5,667 Han Chinese ancestry controls, 453 Thai ancestry cases, 963 Thai ancestry controls	6p21.32	HLA-DRB1	rs9270984-T	0.18	5E-24		1.73		Illumina [2100739] (imputed)	N
614	chr6_qbl_hap6	3811201	3811202	rs9270986	25643325	Renton AE	2015-04-01	JAMA Neurol	A genome-wide association study of myasthenia gravis.	Myasthenia gravis	972 European ancestry cases, 1,977 European ancestry controls	423 European ancestry cases, 467 European ancestry controls	6p21.32	HLA-DRB1, HLA-DQA1	rs9270986-A	0.15	6E-8		1.43	[NR]	Illumina [8114394] (imputed)	N
614	chr6_qbl_hap6	3811312	3811313	rs615672	33736632	Zeng Z	2021-03-18	BMC Med Genomics	Genome-wide association study identifies new loci associated with risk of HBV infection and disease progression.	Persistent hepatitis B virus infection	587 Chinese ancestry persistent cases, 275 Chinese ancestry clearance controls	NA	6p21.32	HLA-DRB1	rs615672-G	0.5276	9E-7		0.5697	NR	Affymetrix [607153]	N
614	chr6_qbl_hap6	3811312	3811313	rs615672	33736632	Zeng Z	2021-03-18	BMC Med Genomics	Genome-wide association study identifies new loci associated with risk of HBV infection and disease progression.	Hepatitis B	460 Chinese ancestry cases, 169 Chinese ancestry controls	NA	6p21.32	HLA-DRB1	rs615672-?	NR	1E-6				Affymetrix [607153]	N
614	chr6_qbl_hap6	3811312	3811313	rs615672	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.32	HLA-DRB1	rs615672-G	0.6531	2E-8	(EA)	0.0253	[0.016-0.034] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
614	chr6_qbl_hap6	3811312	3811313	rs615672	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.32	HLA-DRB1	rs615672-G	0.6427	1E-8		0.0242	[0.016-0.032] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
614	chr6_qbl_hap6	3811312	3811313	rs615672	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6p21.32	HLA, DRB1	rs615672-G	0.6531	1E-6	(EA)	0.0244	[0.014-0.034] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
614	chr6_qbl_hap6	3811312	3811313	rs615672	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6p21.32	HLA, DRB1	rs615672-G	0.6427	1E-6		0.0235	[0.014-0.033] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
614	chr6_qbl_hap6	3811312	3811313	rs615672	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.32	HLA-DRB1	rs615672-?	0.6531	2E-7	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
614	chr6_qbl_hap6	3811312	3811313	rs615672	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.32	HLA-DRB1	rs615672-?	0.6427	1E-7				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
614	chr6_qbl_hap6	3811312	3811313	rs615672	17554300	Wellcome Trust Case Control Consortium	2007-06-07	Nature	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Rheumatoid arthritis	1,860 European ancestry cases, 2,938 European ancestry controls	NA	6p21.32	HLA-DRB1	rs615672-?	NR	8E-27				Affymetrix [469557]	N
614	chr6_qbl_hap6	3811499	3811500	rs2760995	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	6p21.32	NR	rs2760995-?	NR	6E-11				Affymetrix [~ 8270000] (imputed)	N
614	chr6_qbl_hap6	3811499	3811500	rs2760995	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals, 6,795 African American individuals, 6,324 East Asian ancestry individuals, 2,335 South Asian ancestry individuals, 1,442 Hispanic individuals	NA	6p21.32	HLA-DRB	rs2760995-A	NR	4E-8		0.014	[0.0091-0.0189] unit decrease	Affymetrix, Illumina [8034757] (imputed)	N
614	chr6_qbl_hap6	3811499	3811500	rs2760995	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Microalbuminuria	51,861 European, African American, East Asian, South Asian or Hispanic ancestry cases, 297,093 European, African American, East Asian, South Asian or Hispanic ancestry controls	NA	6p21.32	HLA-DRB	rs2760995-G	NR	3E-7		1.0445645	[1.03-1.06]	Affymetrix, Illumina [8326000] (imputed)	N
614	chr6_qbl_hap6	3811501	3811502	rs2647074	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (anti-inflammatory and antirheumatic products, non-steroids)	74,150 European ancestry cases, 90,370 European ancestry controls, 29,694 East Asian ancestry cases, 149,032 East Asian ancestry controls	NA	6p21.32		rs2647074-T	NR	3E-12		0.0772	[0.056-0.099] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
614	chr6_qbl_hap6	3811501	3811502	rs2647074	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DRB1	rs2647074-T	NR	1E-8		0.0186096	[0.012-0.025] unit decrease	Affymetrix [323123] (imputed)	N
614	chr6_qbl_hap6	3811501	3811502	rs2647074	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Aspartate aminotransferase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	6p21.32	HLA-DRB1, HLA-DQA1	rs2647074-?		1E-13		0.0387	[0.029-0.049] unit decrease	Illumina [31500000] (imputed)	N
614	chr6_qbl_hap6	3811501	3811502	rs2647074	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs2647074-T	0.328	1E-34	(Complement C4, C4A.C4B.4481.34.2)	0.32	[0.26-0.38] unit increase	Affymetrix [10572788] (imputed)	N
614	chr6_qbl_hap6	3811501	3811502	rs2647074	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Total bilirubin levels	110,207 Japanese ancestry individuals	NA	6p21.32	HLA-DRB1, HLA-DQA1	rs2647074-?	NR	3E-10		0.03828	[0.026-0.05] unit increase novel	Illumina [6108953] (imputed)	N
614	chr6_qbl_hap6	3811699	3811700	rs539705259	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on CD33dim HLA DR+ CD11b+	1,634 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs539705259-G	0.03706	4E-12		0.8225	[0.59-1.05] unit increase	Illumina [16998734] (imputed)	N
614	chr6_qbl_hap6	3811747	3811748	rs113315602	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	6p21.32	HLA-DRB1	rs113315602-A	0.9027	9E-12		0.003	[0.002-0.004] unit increase	Affymetrix [15275733] (imputed)	N
614	chr6_qbl_hap6	3812035	3812036	rs7760841	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	6p21.32	HLA-DQA1, HLA-DQB1, HLA-DRA, HLA-DRB1, HLA-DRB5, HLA-DRB6	rs7760841-T	0.176847	1E-12		1.1059403	[1.08-1.13]	Affymetrix [8274727] (imputed)	N
614	chr6_qbl_hap6	3812123	3812124	rs145945003	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Yeast infection	52,218 European ancestry cases, 10,235 European ancestry controls	NA	6p21.32	NR	rs145945003-?	NR	1E-7		0.0858	[0.054-0.117] unit decrease	Illumina [at least 560000] (imputed)	N
614	chr6_qbl_hap6	3812157	3812158	rs9271025	34532061	Hodel F	2021-06-11	Virus Evol	Human genomics of the humoral immune response against polyomaviruses.	Anti-JC polyomavirus IgG seropositivity	8,567 European ancestry antibody-positive cases cases, up to 6,836 European ancestry antibody-negative controls	NA	6p21.32		rs9271025-?	NR	4E-46				Affymetrix [NR] (imputed)	N
614	chr6_qbl_hap6	3812266	3812267	rs7761182	27864402	Harris SE	2017-06-01	Int J Epidemiol	Molecular genetic contributions to self-rated health.	Self-rated health	111,749 British ancestry individuals	NA	6p21.32	HLA	rs7761182-?	NR	2E-9		0.03	[NR] unit increase	Affymetrix [~ 17300000] (imputed)	N
614	chr6_qbl_hap6	3812385	3812386	rs13193738	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Strep throat	52,487 European ancestry cases, 22,017 European ancestry controls	NA	6p21.32	NR	rs13193738-?	NR	1E-7		0.0467	[0.029-0.064] unit increase	Illumina [at least 560000] (imputed)	N
614	chr6_qbl_hap6	3812600	3812601	rs113742050	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DRB1	rs113742050-T	NR	4E-12		0.0348298	[0.025-0.045] unit increase	Affymetrix [319769] (imputed)	N
614	chr6_qbl_hap6	3812600	3812601	rs113742050	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DRB1	rs113742050-T	NR	2E-12		0.0353099	[0.025-0.045] unit increase	Affymetrix [319769] (imputed)	N
614	chr6_qbl_hap6	3812681	3812682	rs9271060	26891255	Jung ES	2016-02-18	Inflamm Bowel Dis	HLA-C*01 is a Risk Factor for Crohn's Disease.	Crohn's disease	275 Korean ancestry cases, 2,369 Korean ancestry controls	242 Korean ancestry cases, 1,066 Korean ancestry controls	6p21.32	HLA-DQA1, HLA-DRB1	rs9271060-G	0.77	1E-22		2.857143	[2.33-3.57]	Affymetrix [3387207] (imputed)	N
614	chr6_qbl_hap6	3812692	3812693	rs4713555	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs4713555-?	NR	7E-13				Affymetrix [~ 8270000] (imputed)	N
614	chr6_qbl_hap6	3812692	3812693	rs4713555	26482879	Paternoster L	2015-10-19	Nat Genet	Multi-ancestry genome-wide association study of 21,000 cases and 95,000 controls identifies new risk loci for atopic dermatitis.	Atopic dermatitis	18,900 European ancestry cases, 1,472 Japanese ancestry cases, 422 African American cases, 300 Latino cases, 305 cases, 84,166 European ancestry controls, 7,966 Japanese ancestry controls, 844 African American controls, 1,592 Latino controls, 896 controls	30,588 European ancestry cases, 459 African American cases, 1,012 Chinese ancestry cases, 226,537 European ancestry controls, 729 African American controls, 1,362 Chinese ancestry controls	6p21.32	HLA-DRB1, HLA-DQA1	rs4713555-G	0.73	5E-9	(EA, fixed effects)	1.098901		Illumina [15539996] (imputed)	N
614	chr6_qbl_hap6	3812799	3812800	rs9271066	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	683 Turkish ancestry cases, 1,721 Turkish ancestry controls	NA	6p21.32	HLA-DRB1	rs9271066-?	NR	2E-11	(conditional on rs2844678, rs9262437, rs61444472 and rs17193507)			Illumina [4495750] (imputed)	N
614	chr6_qbl_hap6	3812826	3812827	rs3021304	25108386	Hou S	2014-08-10	Nat Genet	Genome-wide association analysis of Vogt-Koyanagi-Harada syndrome identifies two new susceptibility loci at 1p31.2 and 10q21.3.	Vogt-Koyanagi-Harada syndrome	774 Han Chinese ancestry cases, 2,009 Han Chinese ancestry controls	764 Han Chinese ancestry cases, 3594 Han Chinese ancestry controls	6p21.32	HLA-DRB1, HLA-DQA1	rs3021304-G	0.346	1E-118		2.97	[2.71-3.26]	Affymetrix, Illumina [2208258] (imputed)	N
614	chr6_qbl_hap6	3812903	3812904	rs9461776	25030430	Zignego AL	2014-07-17	Genes Immun	Genome-wide association study of hepatitis C virus- and cryoglobulin-related vasculitis.	Mixed cryoglobulinemia vasculitis in chronic hepatitis C infection	356 European ancestry cases, 447 European ancestry controls	92 European ancestry cases, 179 European ancestry controls	6p21.32	HLA-DQA1, HLA-DRB1	rs9461776-G	0.29	7E-9		2.02	[NR]	Illumina [899641]	N
614	chr6_qbl_hap6	3813151	3813152	rs12660719	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs12660719-A	0.961474	2E-15		0.0823824	[0.062-0.103] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3813254	3813255	rs9271082	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	IgA nephropathy	1,180 East Asian ancestry cases, 899 East Asian ancestry controls	NA			rs9271082-C	NR	8E-9		0.466252	[0.31-0.62] unit increase	Illumina [NR] (imputed)	N
614	chr6_qbl_hap6	3813644	3813645	rs9271100	25642632	Liu H	2015-02-02	Nat Genet	Discovery of six new susceptibility loci and analysis of pleiotropic effects in leprosy.	Leprosy	1,548 Chinese ancestry cases, 2,150 Chinese ancestry controls, 4,362 Chinese ancestry controls with immune-related diseases	6,765 Chinese ancestry cases, 9,505 Chinese ancestry controls	6p21.32	HLA-DR-DQ	rs9271100-T	0.217	8E-95		1.68	[NR]	Illumina [4577171] (imputed)	N
614	chr6_qbl_hap6	3813644	3813645	rs9271100	19838193	Han JW	2009-10-18	Nat Genet	Genome-wide association study in a Chinese Han population identifies nine new susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	1,047 Han Chinese ancestry cases, 1,205 Han Chinese ancestry controls	3,152 Han Chinese ancestry cases, 7,050 Han Chinese ancestry controls	6p21.32	HLA-DRB1	rs9271100-?	NR	1E-12		1.9	[1.59-2.27]	Illumina [493955]	N
614	chr6_qbl_hap6	3813961	3813962	rs9271117	24204295	Han F	2013-10-31	PLoS Genet	Genome wide analysis of narcolepsy in China implicates novel immune loci and reveals changes in association prior to versus after the 2009 H1N1 influenza pandemic.	Narcolepsy (onset before 2009 H1N1 influenza pandemic)	up to 893 Chinese ancestry cases with onset before the 2009 H1N1 influenza pandemic, up to 373 Chinese ancestry cases with onset after the 2009 H1N1 influenza pandemic	NA	6p21.32	NR	rs9271117-?	NR	6E-14		1.75	[NR]	Affymetrix [603382]	N
614	chr6_qbl_hap6	3814544	3814545	rs660895	33517400	Ahluwalia TS	2021-01-30	Hum Mol Genet	Genome-Wide Association Study of Circulating Interleukin 6 Levels Identifies Novel Loci.	Interleukin-6 levels	52,654 European ancestry individuals	14,774 European ancestry individuals	6p21.32	HLADRB1, HLADQA1	rs660895-G	0.186447	2E-10		0.035794	[0.024-0.047] unit increase	Affymetrix, Illumina, Perlegen [2454025] (imputed)	N
614	chr6_qbl_hap6	3814544	3814545	rs660895	32912934	Li M	2020-09-10	J Am Soc Nephrol	Genome-Wide Meta-Analysis Identifies Three Novel Susceptibility Loci and Reveals Ethnic Heterogeneity of Genetic Susceptibility for IgA Nephropathy.	IgA nephropathy	2,628 Chinese ancestry cases, 11,563 Chinese ancestry controls	6,879 Han Chinese ancestry cases, 9,019 Han Chinese ancestry controls, 1,039 Italian ancestry cases, 1,289 Italian ancestry controls	6p21.32	DQB1.DRB1	rs660895-G	0.2533255867854363	1E-14	(East Asian)	1.3539767	[1.25335647918749-1.46267487262285]	NR [3611808] (imputed)	N
614	chr6_qbl_hap6	3814544	3814545	rs660895	26028593	Li M	2015-06-01	Nat Commun	Identification of new susceptibility loci for IgA nephropathy in Han Chinese.	IgA nephropathy	1,434 Han Chinese ancestry cases, 10,661 Han Chinese ancestry controls	6,879 Han Chinese ancestry cases, 9,019 Han Chinese ancestry controls	6p21.32	NR	rs660895-G	0.259	1E-10		1.289	[1.184-1.402]	Illumina [3792949] (imputed)	N
614	chr6_qbl_hap6	3814544	3814545	rs660895	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis (ACPA-positive)	up to 9,585 European ancestry cases, up to 33,742 European ancestry controls	NA	6p21.32	HLA	rs660895-G	NR	1E-300		3.0299		Illumina [129464] (imputed)	N
614	chr6_qbl_hap6	3814544	3814545	rs660895	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis (ACPA-negative)	3,297 European ancestry cases, 15,870 European ancestry controls	NA	6p21.32	HLA	rs660895-G	NR	2E-8		1.2083		Illumina [129464]	N
614	chr6_qbl_hap6	3814544	3814545	rs660895	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis	up to 13,838 European ancestry cases, up to 33,742 European ancestry controls	NA	6p21.32	HLA	rs660895-G	NR	1E-300		2.265		Illumina [129464] (imputed)	N
614	chr6_qbl_hap6	3814544	3814545	rs660895	22197929	Yu XQ	2011-12-25	Nat Genet	A genome-wide association study in Han Chinese identifies multiple susceptibility loci for IgA nephropathy.	IgA nephropathy	1,434 Han Chinese ancestry cases, 4,270 Han Chinese ancestry controls	2,703 Han Chinese ancestry cases, 3,464 Han Chinese ancestry controls	6p21.32	HLA-DRB1	rs660895-G	0.24	4E-20		1.34	[1.26-1.42]	Illumina [444882]	N
614	chr6_qbl_hap6	3814544	3814545	rs660895	17804836	Plenge RM	2007-09-05	N Engl J Med	TRAF1-C5 as a risk locus for rheumatoid arthritis--a genomewide study.	Rheumatoid arthritis	1,522 European ancestry cases, 1,850 European ancestry controls	1,053 European ancestry cases, 1,858 European ancestry controls	6p21.32	HLA-DRB1	rs660895-?	0.21	1E-108		3.62	[NR]	Illumina [297086]	N
614	chr6_qbl_hap6	3814551	3814552	rs36022506	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.32	Intergenic	rs36022506-?		2E-6		1.06	[1.03-1.08]	Illumina [7645193] (imputed)	N
614	chr6_qbl_hap6	3814797	3814798	rs535777	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)(bidirectional)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs535777-G	NR	4E-12				Affymetrix [7846216] (imputed)	N
614	chr6_qbl_hap6	3814797	3814798	rs535777	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Help-seeking from a psychiatrist	36,286 British ancestry cases, 297,126 British ancestry controls	NA	6p21.32	NR	rs535777-G	0.862	1E-9		1.0752687	NR	NR [5276842] (imputed)	N
614	chr6_qbl_hap6	3814797	3814798	rs535777	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Help-seeking from a GP	113,262 British ancestry cases, 219,360 British ancestry controls	NA	6p21.32	NR	rs535777-?	NR	5E-6		1.0362694	[1.02-1.05]	NR [5276842] (imputed)	N
614	chr6_qbl_hap6	3815052	3815053	rs9271170	31766143	Ortega-Azorin C	2019-11-13	Nutrients	Candidate Gene and Genome-Wide Association Studies for Circulating Leptin Levels Reveal Population and Sex-Specific Associations in High Cardiovascular Risk Mediterranean Subjects.	Circulating leptin levels in high cardiovascular risk	351 Spanish mediterranean ancestry men, 615 Spanish mediterranean ancestry women	NA	6p21.32	intergenic	rs9271170-?	0.24	8E-6	(model 2)	0.161	NR unit increase	Illumina [628376]	N
614	chr6_qbl_hap6	3815245	3815246	rs674313	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	6p21.32	NR	rs674313-?	NR	2E-10	(MIC-A)	0.503744	[0.35-0.66] unit increase	Illumina [11901634] (imputed)	N
614	chr6_qbl_hap6	3815245	3815246	rs674313	21131588	Slager SL	2010-12-03	Blood	Genome-wide association study identifies a novel susceptibility locus at 6p21.3 among familial CLL.	Chronic lymphocytic leukemia	407 European ancestry cases, 296 European ancestry controls	252 European ancestry cases, 965 European ancestry controls	6p21.32	HLA-DRB5	rs674313-T	0.26	7E-9		1.69	[1.41-2.01]	Affymetrix [827777]	N
614	chr6_qbl_hap6	3815290	3815291	rs9271176	28165464	Law PJ	2017-02-06	Nat Commun	Genome-wide association analysis implicates dysregulation of immunity genes in chronic lymphocytic leukaemia.	Chronic lymphocytic leukemia	4,478 European ancestry cases and 13,213 European ancestry controls.	1,722 European ancestry cases and 4,385 European ancestry controls.	6p21.32	HLA	rs9271176-G	NR	3E-20		1.29	[1.22-1.36]	Affymetrix, Illumina [> 10000000] (imputed)	N
614	chr6_qbl_hap6	3815441	3815442	rs2858863	31235810	Fung K	2019-06-24	Sci Rep	Genome-wide association study identifies loci for arterial stiffness index in 127,121 UK Biobank participants.	Arterial stiffness index	127,121 European ancestry individuals	NA	6p21.32	HLA-DRB1	rs2858863-C	0.796	5E-6		0.023	[0.013-0.033] unit increase	Affymetrix [~ 10446505] (imputed)	N
614	chr6_qbl_hap6	3815693	3815694	rs9271192	31473137	Moreno-Grau S	2019-08-13	Alzheimers Dement	Genome-wide association analysis of dementia and its clinical endophenotypes reveal novel loci associated with Alzheimer's disease and three causality networks: The GR@ACE project.	Alzheimer's disease	4,120 Spanish ancestry cases, 17,008 cases, 3,289 Spanish ancestry controls, 37,154 controls	1,943 Spanish ancestry cases, 8,572 cases, 3,016 Spanish ancestry controls, 11,312 controls	6p21.32	HLA-DRB5	rs9271192-?	NR	5E-7		1.09	[1.13-1.05]	Affymetrix [up to 7055881] (imputed)	N
614	chr6_qbl_hap6	3815693	3815694	rs9271192	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	6p21.32	HLA-DRB5, HLA-DRB1	rs9271192-C	0.2751	4E-8		5.49	NR z-unit increase	Affymetrix, Illumina [up to 10847151] (imputed)	N
614	chr6_qbl_hap6	3815693	3815694	rs9271192	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease (late onset)	24,087 European ancestry cases, 55,058 European ancestry controls	NA	6p21.32	HLA-DRB5, HLA-DRB1	rs9271192-C	NR	5E-7		5.02	NR z-score increase	Illumina [up to 9862738] (imputed)	N
614	chr6_qbl_hap6	3815693	3815694	rs9271192	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	6p21.32	NR	rs9271192-?	NR	7E-10		1.0530598		Affymetrix [7795605] (imputed)	N
614	chr6_qbl_hap6	3815693	3815694	rs9271192	24162737	Lambert JC	2013-10-27	Nat Genet	Meta-analysis of 74,046 individuals identifies 11 new susceptibility loci for Alzheimer's disease.	Alzheimer's disease (late onset)	17,008 European ancestry cases, 37,154 European ancestry controls	8,572 European ancestry cases, 11,312 European ancestry controls	6p21.32	HLA-DRB5, HLA-DRB1	rs9271192-C	0.276	3E-12		1.11	[1.08-1.18]	Illumina [7055881] (imputed)	N
614	chr6_qbl_hap6	3815753	3815754	rs3997868	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.32	NR	rs3997868-?	NR	1E-13				Affymetrix [~ 8270000] (imputed)	N
614	chr6_qbl_hap6	3815796	3815797	rs5021727	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs5021727-A	0.540791	2E-9		0.0240273	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3815796	3815797	rs5021727	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs5021727-A	0.540791	4E-8		0.0219961	[0.014-0.03] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3815796	3815797	rs5021727	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs5021727-A	0.540791	1E-8		0.0228075	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3815796	3815797	rs5021727	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	6p21.32		rs5021727-?	NR	3E-9		0.00542275	[0.0036-0.0072] unit decrease	NR [NR]	N
614	chr6_qbl_hap6	3815796	3815797	rs5021727	31589552	Lind L	2019-10-07	Metab Syndr Relat Disord	Genome-Wide Association Study of the Metabolic Syndrome in UK Biobank.	Metabolic syndrome	291,107 European ancestry individuals	NA	6p21.32	HLA-DRB1	rs5021727-G	0.461566	2E-8		0.0371336	[0.024-0.05] unit increase	Affymetrix [9463307] (imputed)	N
614	chr6_qbl_hap6	3816198	3816199	rs9271209	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	6p21.32	NR	rs9271209-?	NR	2E-85	(EA)			Affymetrix, Illumina [~ 9000000] (imputed)	N
614	chr6_qbl_hap6	3816451	3816452	rs9271215	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Gynecologic disease (multivariate analysis)	up to 7,975 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.32	Intergenic	rs9271215-?		2E-8	(uterine fibroid, uterine cervical cancer)			Illumina [7645193] (imputed)	N
614	chr6_qbl_hap6	3816798	3816799	rs28752509	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs28752509-C	0.542361	3E-18		0.0343946	[0.027-0.042] unit increase	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3816798	3816799	rs28752509	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs28752509-C	0.542361	1E-17		0.0336941	[0.026-0.041] unit increase	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3816801	3816802	rs28752510	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs28752510-G	0.542559	5E-23		0.0388531	[0.031-0.047] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3816801	3816802	rs28752510	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6p21.32		rs28752510-G	0.542559	2E-17		0.033878	[0.026-0.042] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3816801	3816802	rs28752510	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	6p21.32		rs28752510-G	0.542559	5E-9		0.0230374	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3816801	3816802	rs28752510	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	6p21.32		rs28752510-G	0.542559	3E-13		0.0296091	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3816801	3816802	rs28752510	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	6p21.32		rs28752510-G	0.542559	3E-13		0.0294341	[0.022-0.037] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3816801	3816802	rs28752510	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	6p21.32		rs28752510-G	0.542559	4E-17		0.0335623	[0.026-0.041] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3816801	3816802	rs28752510	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs28752510-G	0.542559	4E-14		0.0312145	[0.023-0.039] unit increase	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3816801	3816802	rs28752510	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	6p21.32		rs28752510-G	0.542559	5E-10		0.0257222	[0.018-0.034] unit increase	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3816801	3816802	rs28752510	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs28752510-G	0.542559	1E-19		0.035402	[0.028-0.043] unit increase	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3816801	3816802	rs28752510	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	6p21.32		rs28752510-G	0.542559	2E-9		0.0240001	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3816801	3816802	rs28752510	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	6p21.32		rs28752510-G	0.542559	3E-14		0.030005	[0.022-0.038] unit increase	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3816801	3816802	rs28752510	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs28752510-G	0.542559	2E-20		0.0362502	[0.029-0.044] unit increase	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3816801	3816802	rs28752510	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	6p21.32		rs28752510-G	0.542559	2E-11		0.027339	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3816801	3816802	rs28752510	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	6p21.32		rs28752510-G	0.542559	2E-15		0.0309552	[0.023-0.039] unit increase	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3816846	3816847	rs13191975	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs13191975-T	NR	4E-12		0.0198638	[0.014-0.025] unit increase	Affymetrix [321169] (imputed)	N
614	chr6_qbl_hap6	3817680	3817681	rs9368730	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	6p21.32	HLA-DRB1, HLA-DQA1	rs9368730-G	0.876	2E-8		1.403	[0.74-2.07] ml/min/1.73m2 decrease	Affymetrix, Illumina [at least 5248638] (imputed)	N
614	chr6_qbl_hap6	3818682	3818683	rs9271296	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR++ monocyte %monocyte	3,595 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9271296-G	0.55558	4E-23		0.3033	[0.24-0.36] unit decrease	Illumina [18380843] (imputed)	N
614	chr6_qbl_hap6	3818864	3818865	rs1966002	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs1966002-T	0.454	8E-31		1.337	[1.29-1.39]	Illumina [11270530] (imputed)	N
614	chr6_qbl_hap6	3819070	3819071	rs4530903	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6p21.32		rs4530903-?	NR	9E-20		1.15592	[1.12-1.19]	NR [685523]	N
614	chr6_qbl_hap6	3819070	3819071	rs4530903	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs4530903-T	0.19	2E-8		4.08	[3.13-5.32]	Illumina [NR] (imputed)	N
614	chr6_qbl_hap6	3819070	3819071	rs4530903	23349640	Vijai J	2013-01-17	PLoS Genet	Susceptibility loci associated with specific and shared subtypes of lymphoid malignancies.	Lymphoma	275 Follicular non-Hodgkin's Lymphoma cases, 269 diffuse large B-cell non-Hodgkin's Lymphoma cases, 198 other non-Hodgkin's Lymphoma cases, 202 Hodgkin's Lymphoma cases, 4,044 controls	202 European ancestry Follicular non-Hodgkin's Lymphoma cases, 367 European ancestry diffuse large B-cell non-Hodgkin's Lymphoma cases, 577 European ancestry other non-Hodgkin's Lymphoma cases, 99 European ancestry Hodgkin's Lymphoma cases, 2,596 European ancestry controls	6p21.32	HLA-DRB5, HLA-DQA1	rs4530903-T	NR	3E-6	(LYM)	1.29	[1.16-1.43]	Affymetrix [530583]	N
614	chr6_qbl_hap6	3819070	3819071	rs4530903	23349640	Vijai J	2013-01-17	PLoS Genet	Susceptibility loci associated with specific and shared subtypes of lymphoid malignancies.	Lymphoma	275 Follicular non-Hodgkin's Lymphoma cases, 269 diffuse large B-cell non-Hodgkin's Lymphoma cases, 198 other non-Hodgkin's Lymphoma cases, 202 Hodgkin's Lymphoma cases, 4,044 controls	202 European ancestry Follicular non-Hodgkin's Lymphoma cases, 367 European ancestry diffuse large B-cell non-Hodgkin's Lymphoma cases, 577 European ancestry other non-Hodgkin's Lymphoma cases, 99 European ancestry Hodgkin's Lymphoma cases, 2,596 European ancestry controls	6p21.32	HLA-DRB5, HLA-DQA1	rs4530903-T	NR	3E-12	(FL)	1.93	[NR]	Affymetrix [530583]	N
614	chr6_qbl_hap6	3819070	3819071	rs4530903	23349640	Vijai J	2013-01-17	PLoS Genet	Susceptibility loci associated with specific and shared subtypes of lymphoid malignancies.	Lymphoma	275 Follicular non-Hodgkin's Lymphoma cases, 269 diffuse large B-cell non-Hodgkin's Lymphoma cases, 198 other non-Hodgkin's Lymphoma cases, 202 Hodgkin's Lymphoma cases, 4,044 controls	202 European ancestry Follicular non-Hodgkin's Lymphoma cases, 367 European ancestry diffuse large B-cell non-Hodgkin's Lymphoma cases, 577 European ancestry other non-Hodgkin's Lymphoma cases, 99 European ancestry Hodgkin's Lymphoma cases, 2,596 European ancestry controls	6p21.32	HLA-DRB5, HLA-DQA1	rs4530903-T	NR	2E-8	(NHL)	1.37	[1.23-1.54]	Affymetrix [530583]	N
614	chr6_qbl_hap6	3819070	3819071	rs4530903	23212062	Fanous AH	2012-12-01	Am J Psychiatry	Genome-wide association study of clinical dimensions of schizophrenia: polygenic effect on disorganized symptoms.	Schizophrenia	2,454 European ancestry cases	NA	6p21.32	HLA-DRB1, HLA-DQA1	rs4530903-?	NR	5E-6	(Negative/disorganized symptoms)	0.0919	[NR] unit increase	Affymetrix [696491]	N
614	chr6_qbl_hap6	3819103	3819104	rs522308	29521573	Buck D	2018-03-01	Mult Scler	Effect of HLA-DRB1 alleles and genetic variants on the development of neutralizing antibodies to interferon beta in the BEYOND and BENEFIT trials.	Neutralising antibody response to interferon beta therapy in multiple sclerosis (presence of antibodies)	361 European, Hispanic, Asian, African or unknown ancestry cases, 580 European, Hispanic, Asian, African or unknown ancestry controls	NA	6p21.32	intergenic	rs522308-T	0.25	2E-15		2.6	[2.05-3.29]	Affymetrix [8671751] (imputed)	N
614	chr6_qbl_hap6	3819662	3819663	rs9271324	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	Composite immunoglobulin trait (IgA x IgG x IgM)	14,183 Icelandic ancestry individuals	2,146 Swedish ancestry individuals	6p21.32	HLA-DQA1	rs9271324-G	0.2804	4E-19		0.11	NR SD units decrease	Illumina [21568490] (imputed)	N
614	chr6_qbl_hap6	3819693	3819694	rs9271325	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	6p21.32		rs9271325-?	NR	2E-8		0.00512579	[0.0033-0.0069] unit increase	NR [NR]	N
614	chr6_qbl_hap6	3819781	3819782	rs34656207	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	6p21.32		rs34656207-T	NR	1E-126		0.0477	[0.044-0.052] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
614	chr6_qbl_hap6	3819781	3819782	rs34656207	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	6p21.32	HLA-DRB1, HLA-DQA1	rs34656207-T	0.36	1E-111		22.4	z-score increase	Affymetrix [4314223] (imputed)	N
614	chr6_qbl_hap6	3819792	3819793	rs3104414	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DQA1	rs3104414-A	NR	9E-13		0.0232695	[0.017-0.03] unit decrease	Affymetrix [323123] (imputed)	N
614	chr6_qbl_hap6	3819792	3819793	rs3104414	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR+ T cell%T cell	3,596 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs3104414-A	0.35131	9E-9		0.1693	[0.11-0.23] unit increase	Illumina [18380873] (imputed)	N
614	chr6_qbl_hap6	3819792	3819793	rs3104414	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Chronic sinus infection	5,291 European ancestry cases, 79,622 European ancestry controls	NA	6p21.32	NR	rs3104414-?	NR	2E-6		0.104	[0.061-0.147] unit decrease	Illumina [at least 560000] (imputed)	N
614	chr6_qbl_hap6	3819830	3819831	rs3104413	26272072	Jiang X	2015-08-13	Rheumatology (Oxford)	An Immunochip-based interaction study of contrasting interaction effects with smoking in ACPA-positive versus ACPA-negative rheumatoid arthritis.	ACPA-positive rheumatoid arthritis (smoking interaction)	340 European ancestry never-smoker cases, 493 European ancestry ever-smoker cases, 746 European ancestry never-smoker controls, 994 European ancestry ever-smoker controls	187 European ancestry never-smoker cases, 421 European ancestry ever-smoker cases, 461 European ancestry never-smoker controls, 447 European ancestry ever-smoker controls	6p21.32	NR	rs3104413-?	NR	2E-10	(adjusted for HLA shared epitope)	1.7857143	[1.35-2.56]	Illumina [133648] (imputed)	N
614	chr6_qbl_hap6	3819830	3819831	rs3104413	25014791	Govind N	2014-08-14	Mol Med	Immunochip identifies novel, and replicates known, genetic risk loci for rheumatoid arthritis in black South Africans.	Rheumatoid arthritis	263 South African Black cases and 374 South African Black controls	NA	6p21.32	HLA-DRB1	rs3104413-?	NR	5E-21		3.88		Illumina [103770]	N
614	chr6_qbl_hap6	3820077	3820078	rs117356394	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PRSS8	5,356 Icelandic ancestry individuals	NA	6p21.32		rs117356394-G	0.01954	5E-13		0.472302	[0.34-0.6] unit increase	Illumina [7506463] (imputed)	N
614	chr6_qbl_hap6	3820077	3820078	rs117356394	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein BAGE3	5,360 Icelandic ancestry individuals	NA	6p21.32		rs117356394-G	0.01954	5E-13		0.48146	[0.35-0.61] unit increase	Illumina [7506463] (imputed)	N
614	chr6_qbl_hap6	3820184	3820185	rs6917212	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on CD33dim HLA DR+ CD11b-	1,635 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs6917212-G	0.76363	2E-23		0.4456	[0.36-0.53] unit decrease	Illumina [16999305] (imputed)	N
614	chr6_qbl_hap6	3820184	3820185	rs6917212	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on CD33dim HLA DR+ CD11b+	1,634 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs6917212-G	0.23621	2E-26		0.4813	[0.39-0.57] unit decrease	Illumina [16998734] (imputed)	N
614	chr6_qbl_hap6	3820184	3820185	rs6917212	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on CD14- CD16+ monocyte	3,621 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs6917212-G	0.77661	1E-48		0.476	[0.41-0.54] unit decrease	Illumina [18212658] (imputed)	N
614	chr6_qbl_hap6	3820184	3820185	rs6917212	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on CD14+ CD16+ monocyte	3,618 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs6917212-G	0.77656	4E-58		0.5221	[0.46-0.58] unit decrease	Illumina [18213821] (imputed)	N
614	chr6_qbl_hap6	3820225	3820226	rs3129754	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs3129754-G	NR	8E-13		0.020445	[0.015-0.026] unit increase	Affymetrix [319769] (imputed)	N
614	chr6_qbl_hap6	3820225	3820226	rs3129754	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs3129754-G	NR	2E-12		0.0200088	[0.014-0.026] unit increase	Affymetrix [319769] (imputed)	N
614	chr6_qbl_hap6	3820236	3820237	rs3129755	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs3129755-A	0.434675	3E-21		0.0380258	[0.03-0.046] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3820236	3820237	rs3129755	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	6p21.32		rs3129755-A	0.434675	1E-20		0.037327	[0.029-0.045] unit increase	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3820236	3820237	rs3129755	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	6p21.32		rs3129755-A	0.434675	2E-23		0.0397462	[0.032-0.048] unit increase	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3820338	3820339	rs4959106	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Interleukin-6 levels	21,758 European ancestry individuals	9,173 individuals	6p21.32		rs4959106-T	0.54	7E-13		0.0741	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
614	chr6_qbl_hap6	3820453	3820454	rs13208697	34785669	Grosche S	2021-11-16	Nat Commun	Rare variant analysis in eczema identifies exonic variants in DUSP1, NOTCH4 and SLC9A4.	Eczema	20,016 European ancestry cases, 380,433 European ancestry controls	NA	6p21.32		rs13208697-T	0.1461	7E-18		0.86		Affymetrix, Illumina [9397031] (imputed)	N
614	chr6_qbl_hap6	3820536	3820537	rs6931277	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Family history of Alzheimer's disease	47,793 European ancestry cases, 328,320 European ancestry controls	NA	6p21.32	HLA-DRB1	rs6931277-T	NR	2E-7		5.22	NR z-score decrease	Affymetrix [10847151] (imputed)	N
614	chr6_qbl_hap6	3820536	3820537	rs6931277	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	6p21.32	HLA-DRB1	rs6931277-T	0.153	8E-11		6.49	NR z-unit decrease	Affymetrix, Illumina [up to 10847151] (imputed)	N
614	chr6_qbl_hap6	3820536	3820537	rs6931277	26272072	Jiang X	2015-08-13	Rheumatology (Oxford)	An Immunochip-based interaction study of contrasting interaction effects with smoking in ACPA-positive versus ACPA-negative rheumatoid arthritis.	ACPA-positive rheumatoid arthritis (smoking interaction)	340 European ancestry never-smoker cases, 493 European ancestry ever-smoker cases, 746 European ancestry never-smoker controls, 994 European ancestry ever-smoker controls	187 European ancestry never-smoker cases, 421 European ancestry ever-smoker cases, 461 European ancestry never-smoker controls, 447 European ancestry ever-smoker controls	6p21.32	NR	rs6931277-?	NR	2E-10	(adjusted for HLA shared epitope)	1.7857143	[1.35-2.56]	Illumina [133648] (imputed)	N
614	chr6_qbl_hap6	3820580	3820581	rs7760731	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p21.32	HLA-DQA1	rs7760731-C	0.642	6E-11		0.087	[0.062-0.112] unit increase	Affymetrix, Illumina [7374092] (imputed)	N
614	chr6_qbl_hap6	3820656	3820657	rs28383223	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	6p21.32	HLA-DRB1, HLA-DQA1	rs28383223-T	0.58	7E-38		12.9	z-score increase	Affymetrix [4312306] (imputed)	N
614	chr6_qbl_hap6	3820683	3820684	rs114991247	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Growth-regulated protein alpha levels	3,505 Finnish ancestry individuals	NA	6p21.32	NR	rs114991247-C		8E-6		0.2092	[0.12-0.3] SD units increase	NR [10700000] (imputed)	N
614	chr6_qbl_hap6	3820832	3820833	rs28383224	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs28383224-A	NR	4E-20		0.0262329	[0.021-0.032] unit decrease	Affymetrix [319769] (imputed)	N
614	chr6_qbl_hap6	3820832	3820833	rs28383224	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs28383224-A	NR	1E-19		0.0258764	[0.02-0.031] unit decrease	Affymetrix [319769] (imputed)	N
614	chr6_qbl_hap6	3820832	3820833	rs28383224	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs28383224-A	NR	9E-10		0.0176752	[0.012-0.023] unit decrease	Affymetrix [321114] (imputed)	N
614	chr6_qbl_hap6	3820832	3820833	rs28383224	29769526	Estrada K	2018-05-16	Nat Commun	A whole-genome sequence study identifies genetic risk factors for neuromyelitis optica.	Neuromyelitis optica (AQP4-IgG-positive)	66 European ancestry cases, 784 European ancestry controls	66 European ancestry cases, 460 European ancestry controls	6p21.32	HLA-DQA1	rs28383224-A	0.42	8E-11		2.66	[1.98-3.56]	Affymetrix [6804788] (imputed)	N
614	chr6_qbl_hap6	3820832	3820833	rs28383224	29769526	Estrada K	2018-05-16	Nat Commun	A whole-genome sequence study identifies genetic risk factors for neuromyelitis optica.	Neuromyelitis optica	66 European ancestry AQP4-IgG antibody seropositive cases, 63 European ancestry AQP4-IgG antibody seronegative cases, 784 European ancestry controls	66 European ancestry AQP4-IgG antibody seropositive cases, 20 European ancestry AQP4-IgG antibody seronegative cases, 460 European ancestry controls	6p21.32	HLA-DQA1	rs28383224-A	0.42	6E-12		2.24	[1.78-2.82]	Affymetrix [6804788] (imputed)	N
614	chr6_qbl_hap6	3820921	3820922	rs9271348	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein KCNE2	5,364 Icelandic ancestry individuals	NA	6p21.32		rs9271348-G	0.3219	7E-13		0.143439	[0.1-0.18] unit decrease	Illumina [7506463] (imputed)	N
614	chr6_qbl_hap6	3820921	3820922	rs9271348	24532677	Bossini-Castillo L	2014-02-14	Ann Rheum Dis	A genome-wide association study of rheumatoid arthritis without antibodies against citrullinated peptides.	Rheumatoid arthritis (ACPA-negative)	1,148 European ancestry cases, 6,008 European ancestry controls	774 European ancestry cases, 1,079 European ancestry controls	6p21.32	HLA-DRB1, HLA-DQA1	rs9271348-?		5E-7		1.2821	[NR]	Illumina [452367]	N
614	chr6_qbl_hap6	3820992	3820993	rs1846190	34493870	Wightman DP	2021-09-07	Nat Genet	A genome-wide association study with 1,126,563 individuals identifies new risk loci for Alzheimer's disease.	Late-onset Alzheimer's disease	90,338 cases, 1,036,225 controls	NA	6p21.32		rs1846190-?	NR	3E-14				Illumina [NR] (imputed)	N
614	chr6_qbl_hap6	3821059	3821060	rs112430285	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	6p21.32	NR	rs112430285-?	NR	8E-12				Affymetrix [~ 8270000] (imputed)	N
614	chr6_qbl_hap6	3821158	3821159	rs33915496	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	89,266 East Asian ancestry individuals	NA	6p21.32	NR	rs33915496-A	0.543315	1E-16		0.039594	[0.03-0.049] SD units increase	Affymetrix, Illumina [16289068] (imputed)	N
614	chr6_qbl_hap6	3821172	3821173	rs28383228	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs28383228-A	0.135	4E-18	(Interleukin-21, IL21.7124.18.3)	0.34	[0.26-0.42] unit increase	Affymetrix [10572788] (imputed)	N
614	chr6_qbl_hap6	3821172	3821173	rs28383228	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs28383228-A	0.135	3E-35	(Ubiquitin carboxyl-terminal hydrolase 25, USP25.9215.117.3)	0.48	[0.4-0.56] unit increase	Affymetrix [10572788] (imputed)	N
614	chr6_qbl_hap6	3821172	3821173	rs28383228	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs28383228-A	0.135	2E-16	(MHC class I polypeptide-related sequence B, MICB.5102.55.3)	0.32	[0.24-0.4] unit increase	Affymetrix [10572788] (imputed)	N
614	chr6_qbl_hap6	3821332	3821333	rs28383233	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	6p21.32		rs28383233-G	0.418462	4E-14		0.029595	[0.022-0.037] unit increase	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3821370	3821371	rs34077986	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs34077986-C	NR	5E-11		0.0189538	[0.013-0.025] unit increase	Affymetrix [321169] (imputed)	N
614	chr6_qbl_hap6	3821492	3821493	rs33932178	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	95,717 East Asian ancestry individuals	NA	6p21.32		rs33932178-G	0.449956	3E-22		0.0431265	[0.034-0.052] unit decrease	Illumina [13471431] (imputed)	N
614	chr6_qbl_hap6	3821498	3821499	rs28383241	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	6p21.32		rs28383241-A	NR	9E-40		0.0249	[0.021-0.029] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
614	chr6_qbl_hap6	3821550	3821551	rs34694416	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Basal cell carcinoma	31,787 European ancestry cases, 619,351 European ancestry controls	NA	6p21.32	HLA-DQA1	rs34694416-T	0.116415	8E-23		1.14	[1.11-1.16]	Affymetrix, Illumina [up to 9061544] (imputed)	N
614	chr6_qbl_hap6	3821760	3821761	rs73730372	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR++ monocyte %monocyte	3,595 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs73730372-T	0.20013	2E-10		0.2818	[0.2-0.37] unit decrease	Illumina [18380843] (imputed)	N
614	chr6_qbl_hap6	3821760	3821761	rs73730372	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs73730372-?	NR	9E-26				Affymetrix [~ 8270000] (imputed)	N
614	chr6_qbl_hap6	3821760	3821761	rs73730372	27285765	Chen D	2016-06-07	Oncotarget	Pooled analysis of genome-wide association studies of cervical intraepithelial neoplasia 3 (CIN3) identifies a new susceptibility locus.	Cervical cancer	1,553 Swedish ancestry cervical intraepithelial neoplasia grade 3 cases, 81 Swedish ancestry cervical cancer cases,  4,442 Swedish ancestry controls	827 Swedish ancestry cervical intraepithelial neoplasia grade 3 cases, 123 Swedish ancestry cervical cancer cases, 1,715 European ancestry controls	6p21.32	intergenic	rs73730372-?		3E-19		1.67	[1.49-1.85]	Illumina [5471179]	N
614	chr6_qbl_hap6	3821788	3821789	rs3129757	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Cathepsin L1 levels	21,758 European ancestry individuals	9,173 individuals	6p21.32		rs3129757-A	0.15	9E-17		0.0997	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
614	chr6_qbl_hap6	3821918	3821919	rs28752520	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs28752520-C	0.227	4E-23	(Complement C4, C4A.C4B.4481.34.2)	0.31	[0.25-0.37] unit increase	Affymetrix [10572788] (imputed)	N
614	chr6_qbl_hap6	3821951	3821952	rs28752523	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	6p21.32		rs28752523-C	0.806174	2E-12		0.0353026	[0.025-0.045] unit increase	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3821951	3821952	rs28752523	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to omega-3 fatty acids	115,006 European ancestry individuals	NA	6p21.32		rs28752523-C	0.806174	4E-8		0.0275581	[0.018-0.037] unit increase	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3821951	3821952	rs28752523	33204752	Butler-Laporte G	2020-09-24	Open Forum Infect Dis	Genetic Determinants of Antibody-Mediated Immune Responses to Infectious Diseases Agents: A Genome-Wide and HLA Association Study.	Human herpes virus 6 IE1A antibody levels	6,968 White British ancestry individuals	NA	6p21.32	HLA-DQA1	rs28752523-C	0.806	8E-9		0.12	[0.079-0.161] unit decrease	NR [25472218] (imputed)	N
614	chr6_qbl_hap6	3822059	3822060	rs73730377	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FAS	5,367 Icelandic ancestry individuals	NA	6p21.32		rs73730377-G	0.179	9E-13		0.172154	[0.12-0.22] unit increase	Illumina [7506463] (imputed)	N
614	chr6_qbl_hap6	3822059	3822060	rs73730377	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.32	NR	rs73730377-?	NR	2E-23				Affymetrix [~ 8270000] (imputed)	N
614	chr6_qbl_hap6	3822247	3822248	rs28752534	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	6p21.32		rs28752534-T	0.699585	3E-10		0.0269354	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3822247	3822248	rs28752534	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	6p21.32		rs28752534-T	0.699588	5E-10		0.0255499	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3822247	3822248	rs28752534	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p21.32	HLA-DRB3	rs28752534-T	0.64	2E-30		1.11	[1.1-1.13] unit increase	Illumina [at least 560000] (imputed)	N
614	chr6_qbl_hap6	3822452	3822453	rs200675567	31577861	Dai J	2019-10-31	Int J Cancer	Genome-wide association study of INDELs identified four novel susceptibility loci associated with lung cancer risk.	Lung cancer	20,871 European ancestry cases, 15,971 European ancestry controls, 2,331 Chinese ancestry cases, 3,077 Chinese ancestry controls	NA	6p21.32	HLA-DQA1	rs200675567-D	0.11	4E-7		0.9	[0.86-0.96]	Illumina [484196]	N
614	chr6_qbl_hap6	3822821	3822822	rs28383254	29903748	Debiec H	2018-06-14	J Am Soc Nephrol	Transethnic, Genome-Wide Analysis Reveals Immune-Related Risk Alleles and Phenotypic Correlates in Pediatric Steroid-Sensitive Nephrotic Syndrome.	Childhood steroid-sensitive nephrotic syndrome	85 Maghrebian cases, 261 Maghrebian controls	NA	6p21.32	HLA-DRB1, HLA-DQA1	rs28383254-?	NR	3E-8		5.7	[3.1-10.6]	Illumina [at least 7529344] (imputed)	N
614	chr6_qbl_hap6	3823084	3823085	rs28383264	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs28383264-T	0.201	1E-12	(Hepatocyte nuclear factor 4-alpha, HNF4A.10041.3.3)	0.24	[0.18-0.3] unit increase	Affymetrix [10572788] (imputed)	N
614	chr6_qbl_hap6	3823150	3823151	rs3104412	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	6p21.32	NR	rs3104412-?	NR	1E-142	(conditional)			Affymetrix [15688218] (imputed)	N
614	chr6_qbl_hap6	3823202	3823203	rs3135005	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	6p21.32	NR	rs3135005-?	NR	2E-9		5.995	NR z score decrease	Illumina [at least 830937] (imputed)	N
614	chr6_qbl_hap6	3823341	3823342	rs70993900	30230522	Zhang S	2018-09-19	Br J Dermatol	Subtype-Specific Inherited Predisposition to Pemphigus in Chinese Population.	Pemphigus vulgaris	255 Chinese ancestry cases, 501 Chinese ancestry controls	110 Chinese ancestry cases, 604 Chinese ancestry controls	6p21.32	NR	rs70993900-?	0.09	1E-45		18.57	NR	Affymetrix [416397]	N
614	chr6_qbl_hap6	3823341	3823342	rs70993900	30230522	Zhang S	2018-09-19	Br J Dermatol	Subtype-Specific Inherited Predisposition to Pemphigus in Chinese Population.	Pemphigus	350 Chinese ancestry cases, 501 Chinese ancestry controls	146 Chinese ancestry cases, 604 Chinese ancestry controls	6p21.32	NR	rs70993900-?	0.09	1E-43		10.92	NR	Affymetrix [416397]	N
614	chr6_qbl_hap6	3823419	3823420	rs11751024	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	6p21.32		rs11751024-C	0.601399	2E-18		0.0366905	[0.028-0.045] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3823419	3823420	rs11751024	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	CAG-882 sp003486385 abundance in stool	5,959 Finnish ancestry individuals	NA	6p21.32		rs11751024-A	0.400705	5E-8		0.104999	[0.067-0.143] unit increase	Illumina [7980478] (imputed)	N
614	chr6_qbl_hap6	3823419	3823420	rs11751024	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TGM3	5,368 Icelandic ancestry individuals	NA	6p21.32		rs11751024-A	0.3876	6E-13		0.141161	[0.1-0.18] unit decrease	Illumina [7506463] (imputed)	N
614	chr6_qbl_hap6	3823419	3823420	rs11751024	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.32	NR	rs11751024-?	NR	5E-24				Affymetrix [~ 8270000] (imputed)	N
614	chr6_qbl_hap6	3823419	3823420	rs11751024	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs11751024-?	NR	9E-35				Affymetrix [~ 8270000] (imputed)	N
614	chr6_qbl_hap6	3823559	3823560	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	VLDL cholesterol levels	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	7E-27		0.0483058	[0.039-0.057] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3823559	3823560	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total phospholipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	3E-13		0.0313476	[0.023-0.04] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3823559	3823560	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small LDL	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	9E-20		0.0410279	[0.032-0.05] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3823559	3823560	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium VLDL	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	2E-27		0.0484871	[0.04-0.057] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3823559	3823560	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium LDL	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	8E-20		0.0412131	[0.032-0.05] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3823559	3823560	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	2E-19		0.0399601	[0.031-0.049] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3823559	3823560	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in LDL	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	9E-17		0.0374103	[0.029-0.046] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3823559	3823560	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total free cholesterol levels	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	8E-17		0.036746	[0.028-0.045] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3823559	3823560	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol minus HDL-C levels	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	4E-18		0.038935	[0.03-0.048] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3823559	3823560	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Polyunsaturated fatty acid levels	115,006 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665908	4E-22		0.0423547	[0.034-0.051] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3823559	3823560	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	2E-28		0.0496534	[0.041-0.058] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3823559	3823560	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small LDL	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	1E-16		0.0372035	[0.028-0.046] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3823559	3823560	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium VLDL	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	4E-27		0.0485352	[0.04-0.057] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3823559	3823560	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium LDL	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	2E-18		0.0396392	[0.031-0.048] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3823559	3823560	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-6 fatty acid levels	115,006 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665908	3E-21		0.0416405	[0.033-0.05] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3823559	3823560	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Linoleic acid levels	115,006 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665908	1E-22		0.0433006	[0.035-0.052] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3823559	3823560	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	9E-26		0.0473496	[0.039-0.056] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3823559	3823560	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	8E-26		0.0473724	[0.039-0.056] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3823559	3823560	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small LDL particles	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	2E-20		0.0419422	[0.033-0.051] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3823559	3823560	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium VLDL particles	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	4E-27		0.0485075	[0.04-0.057] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3823559	3823560	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium LDL particles	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	6E-19		0.0402296	[0.031-0.049] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3823559	3823560	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of VLDL particles	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	7E-27		0.0480395	[0.039-0.057] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3823559	3823560	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	8E-28		0.0491721	[0.04-0.058] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3823559	3823560	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small LDL	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	6E-22		0.043478	[0.035-0.052] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3823559	3823560	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium LDL	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	2E-21		0.0430313	[0.034-0.052] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3823559	3823560	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in LDL	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	6E-18		0.0389019	[0.03-0.048] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3823559	3823560	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	2E-27		0.0488991	[0.04-0.058] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3823559	3823560	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small LDL	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	6E-19		0.0401589	[0.031-0.049] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3823559	3823560	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	3E-19		0.0405703	[0.032-0.049] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3823565	3823566	rs61126090	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Terminally Differentiated CD4-CD8- T cell Absolute Count	3,395 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs61126090-G	0.19907	1E-12		0.2671	[0.19-0.34] unit decrease	Illumina [18332267] (imputed)	N
614	chr6_qbl_hap6	3823566	3823567	rs28383283	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Terminally Differentiated CD4-CD8- T cell %T cell	3,427 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs28383283-T	0.2651	1E-9		0.2109	[0.14-0.28] unit decrease	Illumina [18349913] (imputed)	N
614	chr6_qbl_hap6	3823938	3823939	rs28383307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large HDL	115,082 European ancestry individuals	NA	6p21.32		rs28383307-C	0.805689	2E-9		0.0282931	[0.019-0.037] unit increase	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3823938	3823939	rs28383307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large HDL	115,082 European ancestry individuals	NA	6p21.32		rs28383307-C	0.805689	3E-9		0.0277214	[0.019-0.037] unit increase	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3823938	3823939	rs28383307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	6p21.32		rs28383307-C	0.805689	8E-11		0.0304025	[0.021-0.04] unit increase	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3823938	3823939	rs28383307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	6p21.32		rs28383307-C	0.805689	6E-9		0.026858	[0.018-0.036] unit increase	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3823938	3823939	rs28383307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	6p21.32		rs28383307-C	0.805689	2E-11		0.0315135	[0.022-0.041] unit increase	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3823965	3823966	rs28383308	33768542	Liu Y	2021-03-26	Clin Pharmacol Ther	Class II HLA Variants Associate with Risk of Pegaspargase Hypersensitivity.	Asparaginase hypersensitivity in acute lymphoblastic leukemia	2,290 European ancestry individuals, 310 African ancestry individuals, 798 Native American individuals, 112 Asian ancestry individuals, 387 individuals	NA	6p21.32	HLA-DQA1	rs28383308-T	NR	5E-14		1.95	[NR]	Affymetrix, Illumina [NR] (imputed)	N
614	chr6_qbl_hap6	3823977	3823978	rs9271365	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hypothyroidism	30,155 European ancestry cases, 379,986 European ancestry controls, 1,114 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	6p21.32		rs9271365-G	NR	5E-123		0.2484	[0.23-0.27] unit increase	Affymetrix, Illumina [25801083] (imputed)	N
614	chr6_qbl_hap6	3823977	3823978	rs9271365	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hashimoto thyroiditis	15,654 European ancestry cases, 379,986 European ancestry controls, 537 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	6p21.32		rs9271365-G	NR	1E-39		0.2531	[0.22-0.29] unit increase	Affymetrix, Illumina [25797652] (imputed)	N
614	chr6_qbl_hap6	3823977	3823978	rs9271365	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	6p21.32	NR	rs9271365-?	NR	7E-35				Affymetrix [~ 8270000] (imputed)	N
614	chr6_qbl_hap6	3824014	3824015	rs13191810	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium VLDL	115,082 European ancestry individuals	NA	6p21.32		rs13191810-C	0.687691	5E-25		0.0445033	[0.036-0.053] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3824014	3824015	rs13191810	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs13191810-C	0.687691	2E-21		0.040583	[0.032-0.049] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3824014	3824015	rs13191810	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs13191810-C	0.687691	3E-22		0.0414982	[0.033-0.05] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3824014	3824015	rs13191810	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs13191810-C	0.687691	5E-24		0.0433674	[0.035-0.052] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3824014	3824015	rs13191810	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs13191810-C	0.687691	3E-16		0.0350026	[0.027-0.043] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3824014	3824015	rs13191810	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	6p21.32		rs13191810-C	0.687723	6E-17		0.0344759	[0.026-0.043] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3824014	3824015	rs13191810	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs13191810-C	0.687691	1E-22		0.0419227	[0.034-0.05] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3824014	3824015	rs13191810	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs13191810-C	0.687691	3E-24		0.0434772	[0.035-0.052] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3824014	3824015	rs13191810	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs13191810-C	0.687691	7E-17		0.0354956	[0.027-0.044] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3824014	3824015	rs13191810	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-3 fatty acid levels	115,006 European ancestry individuals	NA	6p21.32		rs13191810-C	0.687723	5E-14		0.0321812	[0.024-0.041] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3824014	3824015	rs13191810	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs13191810-C	0.687691	5E-25		0.0444045	[0.036-0.053] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3824014	3824015	rs13191810	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large VLDL particles	115,082 European ancestry individuals	NA	6p21.32		rs13191810-C	0.687691	2E-22		0.0414621	[0.033-0.05] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3824014	3824015	rs13191810	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large VLDL particles	115,082 European ancestry individuals	NA	6p21.32		rs13191810-C	0.687691	9E-24		0.0430671	[0.035-0.051] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3824014	3824015	rs13191810	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of chylomicrons and extremely large VLDL particles	115,082 European ancestry individuals	NA	6p21.32		rs13191810-C	0.687691	2E-16		0.0351965	[0.027-0.044] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3824014	3824015	rs13191810	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	6p21.32		rs13191810-C	0.687691	1E-8		0.0223672	[0.015-0.03] unit increase	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3824014	3824015	rs13191810	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for VLDL particles	115,082 European ancestry individuals	NA	6p21.32		rs13191810-C	0.687691	4E-18		0.0359074	[0.028-0.044] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3824014	3824015	rs13191810	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.32	Intergenic	rs13191810-T	NR	1E-6	(men)	0.0240553	[0.014-0.034] unit decrease	Illumina [13520550] (imputed)	N
614	chr6_qbl_hap6	3824037	3824038	rs9271366	26278503	Huang C	2015-11-01	Gastroenterology	Characterization of genetic loci that affect susceptibility to inflammatory bowel diseases in African Americans.	Ulcerative colitis	361 African American cases, 1,797 African American controls	NA	6p21.32	HLA-DQA1	rs9271366-A	NR	7E-6		1.627	[1.315-2.013]	Illumina [130241]	N
614	chr6_qbl_hap6	3824037	3824038	rs9271366	23850713	Yang SK	2013-07-14	Gut	Genome-wide association study of Crohn's disease in Koreans revealed three new susceptibility loci and common attributes of genetic susceptibility across ethnic populations.	Crohn's disease	532 Korean ancestry cases, 733 Korean ancestry controls	1,779 Korean ancestry cases, 1,709 Korean ancestry controls	6p21.32	HLA-DRA, HLA-DRB5, BTNL2, HLA-DRB1, HLA-DQA1	rs9271366-A	0.888	5E-12		1.66	[1.44-1.92]	Illumina [5664371] (imputed)	N
614	chr6_qbl_hap6	3824037	3824038	rs9271366	23511034	Yang SK	2013-04-01	Inflamm Bowel Dis	Genome-wide association study of ulcerative colitis in Koreans suggests extensive overlapping of genetic susceptibility with Caucasians.	Ulcerative colitis	388 Korean ancestry cases, 739 Korean ancestry controls	417 Korean ancestry cases, 732 Korean ancestry controls	6p21.32	HLA-DRB1, HLA-DQA1	rs9271366-G	0.11	1E-18		2.1	[1.78-2.48]	Illumina [581060]	N
614	chr6_qbl_hap6	3824037	3824038	rs9271366	21699788	Okada Y	2011-06-20	Gastroenterology	HLA-Cw*1202-B*5201-DRB1*1502 haplotype increases risk for ulcerative colitis but reduces risk for Crohn's disease.	Ulcerative colitis or Crohn's disease	372 Japanese ancestry Crohn's disease cases, 372 Japanese ancestry ulcerative colitis cases	607 Japanese ancestry Crohn's disease cases, 376 Japanese ancestry ulcerative colitis cases	6p21.32	MHC, HLA-DRB1	rs9271366-C	0.21	2E-70	(UC vs. CD)	4.44	[3.74-5.27]	Illumina [461368]	N
614	chr6_qbl_hap6	3824037	3824038	rs9271366	20694011	Ferreira RC	2010-08-08	Nat Genet	Association of IFIH1 and other autoimmunity risk alleles with selective IgA deficiency.	Immunoglobulin A	430 European ancestry cases, 1,090 European ancestry controls	342 European ancestry cases, 886 European ancestry controls	6p21.32	HLA-DRB1	rs9271366-?	0.85	3E-33		7.69	[5.26-11.11]	Illumina [2057134] (imputed)	N
614	chr6_qbl_hap6	3824037	3824038	rs9271366	20598377	Nischwitz S	2010-06-30	J Neuroimmunol	Evidence for VAV2 and ZNF433 as susceptibility genes for multiple sclerosis.	Multiple sclerosis	590 European ancestry cases, 825 European ancestry controls	NA	6p21.32	DQA1	rs9271366-G	NR	4E-17		2.62	[2.09-3.28]	Illumina [~ 300000]	N
614	chr6_qbl_hap6	3824037	3824038	rs9271366	19838195	Gateva V	2009-11-01	Nat Genet	A large-scale replication study identifies TNIP1, PRDM1, JAZF1, UHRF1BP1 and IL10 as risk loci for systemic lupus erythematosus.	Systemic lupus erythematosus	1,310 European ancestry cases, 7,859 European ancestry controls	1,963 European ancestry cases, 4,329 European ancestry controls	6p21.32	HLA-DRB1	rs9271366-G	0.16	1E-7		1.26	[1.18-1.36]	Illumina [~ 2100000] (imputed)	N
614	chr6_qbl_hap6	3824037	3824038	rs9271366	19525955	Bahlo M	2009-06-14	Nat Genet	Genome-wide association study identifies new multiple sclerosis susceptibility loci on chromosomes 12 and 20.	Multiple sclerosis	1,618 European ancestry cases, 3,413 European ancestry controls	2,256 European ancestry cases, 2,310 European ancestry controls	6p21.32	HLA-DRB1	rs9271366-G	0.15	7E-184		2.78	[NR]	Illumina [302098]	N
614	chr6_qbl_hap6	3824091	3824092	rs9271367	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on plasmacytoid Dendritic Cell	2,872 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9271367-A	0.85909	2E-29		0.5463	[0.45-0.64] unit decrease	Illumina [17926607] (imputed)	N
614	chr6_qbl_hap6	3824091	3824092	rs9271367	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on myeloid Dendritic Cell	2,872 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9271367-A	0.85909	3E-35		0.5882	[0.5-0.68] unit decrease	Illumina [17926605] (imputed)	N
614	chr6_qbl_hap6	3824091	3824092	rs9271367	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on Dendritic Cell	2,871 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9271367-A	0.85909	4E-32		0.5586	[0.47-0.65] unit decrease	Illumina [17926566] (imputed)	N
614	chr6_qbl_hap6	3824091	3824092	rs9271367	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on CD33- HLA DR+	1,635 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9271367-A	0.85909	2E-12		0.4146	[0.3-0.53] unit decrease	Illumina [16999305] (imputed)	N
614	chr6_qbl_hap6	3824181	3824182	rs607929	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	6p21.32	intergenic	rs607929-G	0.4428	4E-9		0.02092051	[0.014-0.028] unit increase	Affymetrix [~ 2500000] (imputed)	N
614	chr6_qbl_hap6	3824250	3824251	rs9271375	35074870	Chia R	2022-02-01	Proc Natl Acad Sci U S A	Identification of genetic risk loci and prioritization of genes and pathways for myasthenia gravis: a genome-wide association study.	Late-onset myasthenia gravis	1,278 European ancestry cases, 33,652 European ancestry controls	308 European ancestry cases, 7,056 European ancestry controls	6p21.32		rs9271375-A	0.481	2E-19		0.66	[0.6-0.72]	Illumina [24006246] (imputed)	N
614	chr6_qbl_hap6	3824250	3824251	rs9271375	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Urolithiasis	6,223 European ancestry cases, 482,123 European ancestry controls, 11,699 East Asian ancestry cases, 167,027 East Asian ancestry controls	NA	6p21.32		rs9271375-A	NR	5E-11		0.0785	[0.055-0.102] unit decrease	Affymetrix, Illumina [25845211] (imputed)	N
614	chr6_qbl_hap6	3824340	3824341	rs28688825	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	6p21.32	NR	rs28688825-?	NR	1E-28				Affymetrix [~ 8270000] (imputed)	N
614	chr6_qbl_hap6	3824340	3824341	rs28688825	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs28688825-?	NR	9E-24				Affymetrix [~ 8270000] (imputed)	N
614	chr6_qbl_hap6	3824340	3824341	rs28688825	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	6p21.32	AGER, AGPAT1, BRD2, BTNL2, C6orf10, EGFL8, GPSM3, HCG23, HLA-DMA, HLA-DMB, HLA-DOB, HLA-DQA1, HLA-DQA2, HLA-DQB1, HLA-DQB2, HLA-DRA, HLA-DRB1, HLA-DRB5, HLA-DRB6, LOC100294145, MIR6721, MIR6833, NOTCH4, PBX2, PPT2-EGFL8, PSMB8, PSMB9, RNF5, RNF5P1, TAP1, TAP2, TAPSAR1	rs28688825-A	0.883307	5E-31		1.1379826	[1.12-1.16]	Affymetrix [8274727] (imputed)	N
614	chr6_qbl_hap6	3824396	3824397	rs28383314	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	6p21.32		rs28383314-T	0.377043	8E-21		0.0374324	[0.03-0.045] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3824396	3824397	rs28383314	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	6p21.32		rs28383314-T	0.377036	7E-12		0.0274798	[0.02-0.035] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3824396	3824397	rs28383314	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs28383314-T	0.377036	2E-25		0.043251	[0.035-0.051] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3824396	3824397	rs28383314	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large HDL	115,082 European ancestry individuals	NA	6p21.32		rs28383314-T	0.377036	6E-13		0.0298794	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3824396	3824397	rs28383314	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs28383314-T	0.377036	2E-27		0.0445853	[0.037-0.053] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3824396	3824397	rs28383314	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small HDL	115,082 European ancestry individuals	NA	6p21.32		rs28383314-T	0.377036	4E-24		0.0415957	[0.034-0.05] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3824396	3824397	rs28383314	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium HDL	115,082 European ancestry individuals	NA	6p21.32		rs28383314-T	0.377036	2E-21		0.0397131	[0.032-0.048] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3824396	3824397	rs28383314	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large HDL	115,082 European ancestry individuals	NA	6p21.32		rs28383314-T	0.377036	4E-8		0.0221728	[0.014-0.03] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3824396	3824397	rs28383314	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in VLDL	115,082 European ancestry individuals	NA	6p21.32		rs28383314-T	0.377036	9E-23		0.0401294	[0.032-0.048] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3824396	3824397	rs28383314	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in HDL	115,082 European ancestry individuals	NA	6p21.32		rs28383314-T	0.377036	8E-21		0.0389843	[0.031-0.047] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3824396	3824397	rs28383314	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total triglycerides levels	115,082 European ancestry individuals	NA	6p21.32		rs28383314-T	0.377036	8E-24		0.0412963	[0.033-0.049] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3824396	3824397	rs28383314	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small HDL	115,082 European ancestry individuals	NA	6p21.32		rs28383314-T	0.377036	5E-22		0.0409595	[0.033-0.049] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3824396	3824397	rs28383314	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total fatty acid levels	115,006 European ancestry individuals	NA	6p21.32		rs28383314-T	0.377051	4E-25		0.0434702	[0.035-0.052] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3824396	3824397	rs28383314	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Saturated fatty acid levels	115,006 European ancestry individuals	NA	6p21.32		rs28383314-T	0.377051	4E-20		0.0385885	[0.03-0.047] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3824396	3824397	rs28383314	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6p21.32		rs28383314-T	0.377036	9E-13		0.0304107	[0.022-0.039] unit increase	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3824396	3824397	rs28383314	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	6p21.32		rs28383314-T	0.377036	1E-11		0.0288571	[0.021-0.037] unit increase	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3824396	3824397	rs28383314	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small HDL	115,082 European ancestry individuals	NA	6p21.32		rs28383314-T	0.377036	8E-22		0.0405037	[0.032-0.049] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3824396	3824397	rs28383314	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6p21.32		rs28383314-T	0.377036	6E-17		0.0342966	[0.026-0.042] unit increase	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3824396	3824397	rs28383314	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	6p21.32		rs28383314-C	NR	4E-59		0.0343	[0.03-0.038] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
614	chr6_qbl_hap6	3824396	3824397	rs28383314	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	6p21.32		rs28383314-C	NR	9E-101		0.0363	[0.033-0.04] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
614	chr6_qbl_hap6	3824396	3824397	rs28383314	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.32		rs28383314-T	0.375	6E-103				Affymetrix [10369434] (imputed)	N
614	chr6_qbl_hap6	3824396	3824397	rs28383314	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DQA1	rs28383314-T	NR	2E-12		0.0225613	[0.016-0.029] unit decrease	Affymetrix [323858] (imputed)	N
614	chr6_qbl_hap6	3824396	3824397	rs28383314	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	HLA-DQA1	rs28383314-T	NR	4E-11		0.0212936	[0.015-0.028] unit decrease	Affymetrix [127266] (imputed)	N
614	chr6_qbl_hap6	3824396	3824397	rs28383314	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DQA1	rs28383314-T	NR	5E-19		0.0281171	[0.022-0.034] unit increase	Affymetrix [323123] (imputed)	N
614	chr6_qbl_hap6	3824396	3824397	rs28383314	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs28383314-T	NR	1E-20		0.027344	[0.022-0.033] unit decrease	Affymetrix [321169] (imputed)	N
614	chr6_qbl_hap6	3824396	3824397	rs28383314	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p21.32	NR	rs28383314-C	0.637389	2E-194				Affymetrix, Illumina [19872809] (imputed)	N
614	chr6_qbl_hap6	3824396	3824397	rs28383314	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	6p21.32	NR	rs28383314-C	0.624131	6E-199		0.061635	[0.058-0.066] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
614	chr6_qbl_hap6	3824396	3824397	rs28383314	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	6p21.32	HLA-DQA1	rs28383314-T	0.375891	4E-76		0.0378536	[0.034-0.042] unit decrease	Affymetrix [NR] (imputed)	N
614	chr6_qbl_hap6	3824396	3824397	rs28383314	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	6p21.32	LINC00336	rs28383314-?	NR	4E-49		0.0398	[0.035-0.045] unit decrease	Affymetrix [5701386] (imputed)	N
614	chr6_qbl_hap6	3824396	3824397	rs28383314	30643255	Kristjansson RP	2019-01-14	Nat Genet	A loss-of-function variant in ALOX15 protects against nasal polyps and chronic rhinosinusitis.	Nasal polyps	86 European ancestry whole-genome sequenced cases, 4,280 European ancestry cases, 13,941 European ancestry whole-genome sequenced controls, 700,740 European ancestry controls	NA	6p21.32	intergenic	rs28383314-C	0.630	5E-8		1.14	[1.09-1.19]	Affymetrix, Illumina [up to 37123566] (imputed)	N
614	chr6_qbl_hap6	3824396	3824397	rs28383314	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	6p21.32	HLA-DQA1	rs28383314-T	0.377	3E-9		0.086	[0.059-0.113] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
614	chr6_qbl_hap6	3824396	3824397	rs28383314	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	6p21.32	intergenic	rs28383314-C	0.6172	9E-64		0.06028895	[0.053-0.067] unit increase	Affymetrix [~ 2500000] (imputed)	N
614	chr6_qbl_hap6	3824396	3824397	rs28383314	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	6p21.32	intergenic	rs28383314-C	0.6171	7E-27		0.03829286	[0.031-0.045] unit increase	Affymetrix [~ 2500000] (imputed)	N
614	chr6_qbl_hap6	3824396	3824397	rs28383314	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	6p21.32	intergenic	rs28383314-C	0.6172	1E-60		0.05870737	[0.052-0.066] unit increase	Affymetrix [~ 2500000] (imputed)	N
614	chr6_qbl_hap6	3824462	3824463	rs144934262	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on CD33+ HLA DR+ CD14-	1,579 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs144934262-T	0.05991	2E-10		0.5304	[0.37-0.69] unit increase	Illumina [16961968] (imputed)	N
614	chr6_qbl_hap6	3824639	3824640	rs9271393	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Peripheral artery disease	7,114 European ancestry cases, 475,964 European ancestry controls, 4,112 East Asian ancestry cases, 173,601 East Asian ancestry controls	NA	6p21.32		rs9271393-C	NR	2E-8		0.116	[0.075-0.157] unit increase	Affymetrix, Illumina [25844651] (imputed)	N
614	chr6_qbl_hap6	3824706	3824707	rs9271401	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs9271401-G	0.245	9E-21	(Complement C4, C4A.C4B.4481.34.2)	0.28	[0.22-0.34] unit decrease	Affymetrix [10572788] (imputed)	N
614	chr6_qbl_hap6	3824706	3824707	rs9271401	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs9271401-G	0.245	5E-21	(cAMP-specific 3',5'-cyclic phosphodiesterase 4D, PDE4D.5255.22.3)	0.28	[0.22-0.34] unit decrease	Affymetrix [10572788] (imputed)	N
614	chr6_qbl_hap6	3824706	3824707	rs9271401	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs9271401-G	0.245	1E-24	(Glutamate receptor 4, GRIA4.10760.107.3)	0.3	[0.24-0.36] unit decrease	Affymetrix [10572788] (imputed)	N
614	chr6_qbl_hap6	3824769	3824770	rs9271406	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RPL30	5,357 Icelandic ancestry individuals	NA	6p21.32		rs9271406-G	0.4339	4E-12		0.126569	[0.091-0.162] unit increase	Illumina [7506463] (imputed)	N
614	chr6_qbl_hap6	3824769	3824770	rs9271406	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	6p21.32		rs9271406-?	NR	2E-8		0.00512675	[0.0033-0.0069] unit decrease	NR [NR]	N
614	chr6_qbl_hap6	3824769	3824770	rs9271406	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs9271406-A	NR	2E-24		0.0290677	[0.023-0.035] unit decrease	Affymetrix [321169] (imputed)	N
614	chr6_qbl_hap6	3824769	3824770	rs9271406	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6p21.32	NR	rs9271406-G	0.497785	7E-25		0.024019469	[0.019-0.029] unit increase	Affymetrix [93095623] (imputed)	N
614	chr6_qbl_hap6	3825040	3825041	rs9271421	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	HLA-DQA1	rs9271421-C	0.861	5E-29	(GDH/6PGL endoplasmic bifunctional protein, H6PD.7161.25.3)	0.39	[0.31-0.47] unit decrease	Affymetrix [10572788] (imputed)	N
614	chr6_qbl_hap6	3825166	3825167	rs9271429	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	Systemic lupus erythematosus	1,639 East Asian ancestry cases, 2,410 East Asian ancestry controls	NA			rs9271429-G	NR	2E-11		0.2667	[0.19-0.34] unit decrease	Illumina [NR] (imputed)	N
614	chr6_qbl_hap6	3825212	3825213	rs9271431	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs9271431-A	NR	2E-14		0.0217731	[0.016-0.027] unit increase	Affymetrix [319769] (imputed)	N
614	chr6_qbl_hap6	3825212	3825213	rs9271431	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs9271431-A	NR	8E-14		0.0213218	[0.016-0.027] unit increase	Affymetrix [319769] (imputed)	N
614	chr6_qbl_hap6	3825813	3825814	rs9271469	34212547	An J	2021-07-01	Allergy Asthma Immunol Res	Genome-Wide Association Study of Korean Asthmatics: A Comparison With UK Asthmatics.	Adult asthma	1,386 Korean ancestry cases, 5,205 Korean ancestry controls	NA	6p21.32		rs9271469-C	0.28	4E-8		1.33	[1.2-1.48]	Affymetrix [4922160] (imputed)	N
614	chr6_qbl_hap6	3825896	3825897	rs76815088	35074870	Chia R	2022-02-01	Proc Natl Acad Sci U S A	Identification of genetic risk loci and prioritization of genes and pathways for myasthenia gravis: a genome-wide association study.	Myasthenia gravis	1,873 European ancestry cases, 36,370 European ancestry controls	7,412 European ancestry individuals	6p21.32		rs76815088-C	0.061	6E-16		0.42	[0.34-0.52]	Illumina [24006246] (imputed)	N
614	chr6_qbl_hap6	3826401	3826402	rs34104805	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.32	NR	rs34104805-?	NR	1E-13				Affymetrix [~ 8270000] (imputed)	N
614	chr6_qbl_hap6	3826401	3826402	rs34104805	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs34104805-?	NR	4E-17				Affymetrix [~ 8270000] (imputed)	N
614	chr6_qbl_hap6	3826449	3826450	rs35597309	25129146	Wu C	2014-08-17	Nat Genet	Joint analysis of three genome-wide association studies of esophageal squamous cell carcinoma in Chinese populations.	Esophageal squamous cell carcinoma	5,337 Han Chinese ancestry cases, 5,787 Han Chinese ancestry controls	9,654 Han Chinese ancestry cases, 10,058 Han Chinese ancestry  controls	6p21.32	HLA	rs35597309-A	0.072	1E-7		1.19	[1.12-1.27]	Affymetrix, Illumina [7556215] (imputed)	N
614	chr6_qbl_hap6	3826483	3826484	rs9271500	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	6p21.32		rs9271500-C	0.54239	1E-9		0.0250109	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3826546	3826547	rs73728611	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs73728611-A	0.878781	2E-8		0.0350323	[0.023-0.047] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3826546	3826547	rs73728611	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs73728611-A	0.878781	2E-8		0.0353342	[0.023-0.048] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3826546	3826547	rs73728611	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs73728611-A	0.878781	5E-9		0.0365405	[0.024-0.049] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3826546	3826547	rs73728611	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	6p21.32		rs73728611-A	0.878767	4E-9		0.0354428	[0.024-0.047] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3826546	3826547	rs73728611	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs73728611-A	0.878781	5E-8		0.0343432	[0.022-0.047] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3826546	3826547	rs73728611	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs73728611-A	0.878781	3E-8		0.0346994	[0.022-0.047] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3826546	3826547	rs73728611	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large VLDL particles	115,082 European ancestry individuals	NA	6p21.32		rs73728611-A	0.878781	3E-8		0.0346989	[0.022-0.047] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3826546	3826547	rs73728611	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large VLDL particles	115,082 European ancestry individuals	NA	6p21.32		rs73728611-A	0.878781	5E-8		0.0343334	[0.022-0.047] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3826546	3826547	rs73728611	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of chylomicrons and extremely large VLDL particles	115,082 European ancestry individuals	NA	6p21.32		rs73728611-A	0.878781	2E-8		0.0352602	[0.023-0.048] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3826546	3826547	rs73728611	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	6p21.32	HLA-DQA1	rs73728611-A	0.8765	1E-9		0.003	[0.0022-0.0038] unit increase	Affymetrix [15275733] (imputed)	N
614	chr6_qbl_hap6	3827174	3827175	rs9271536	33204752	Butler-Laporte G	2020-09-24	Open Forum Infect Dis	Genetic Determinants of Antibody-Mediated Immune Responses to Infectious Diseases Agents: A Genome-Wide and HLA Association Study.	Epstein-Barr virus VCA p18 antibody levels	8,518 White British ancestry individuals	NA	6p21.32	HLA-DQA1	rs9271536-A	0.180	7E-21		0.19	[0.15-0.23] unit increase	NR [25472218] (imputed)	N
614	chr6_qbl_hap6	3827174	3827175	rs9271536	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Terminally Differentiated CD4+ T cell %T cell	3,427 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9271536-T	0.77188	3E-18		0.291	[0.23-0.36] unit decrease	Illumina [18349913] (imputed)	N
614	chr6_qbl_hap6	3827174	3827175	rs9271536	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Terminally Differentiated CD4+ T cell %CD4+ T cell	3,427 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9271536-T	0.77188	8E-17		0.2806	[0.21-0.35] unit decrease	Illumina [18349913] (imputed)	N
614	chr6_qbl_hap6	3827174	3827175	rs9271536	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	SSC-A on CD4+ T cell	3,113 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9271536-T	0.76919	9E-14		0.2591	[0.19-0.33] unit decrease	Illumina [18030777] (imputed)	N
614	chr6_qbl_hap6	3827174	3827175	rs9271536	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Naive CD4+ T cell %CD4+ T cell	3,427 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9271536-T	0.77188	4E-12		0.2324	[0.17-0.3] unit increase	Illumina [18349913] (imputed)	N
614	chr6_qbl_hap6	3827174	3827175	rs9271536	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Effector Memory CD4+ T cell %T cell	3,427 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9271536-T	0.77188	3E-12		0.2368	[0.17-0.3] unit decrease	Illumina [18349913] (imputed)	N
614	chr6_qbl_hap6	3827178	3827179	rs9271537	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Terminally Differentiated CD4+ T cell Absolute Count	3,395 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9271537-T	0.6246700000000001	2E-9		0.1866	[0.13-0.25] unit decrease	Illumina [18332267] (imputed)	N
614	chr6_qbl_hap6	3827224	3827225	rs9271539	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p21.32	HLA-DRB1, HLA-DQA1	rs9271539-?	0.56	2E-7	(Turkish)	1.6393442	[1.35-1.96]	Illumina [up to 547389]	N
614	chr6_qbl_hap6	3827355	3827356	rs9271547	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	HLA-DQA2	rs9271547-A	0.551	6E-80	(HLA class II histocompatibility antigen, DQ alpha 2 chain, HLA.DQA2.7757.5.3)	0.45	[0.41-0.49] unit increase	Affymetrix [10572788] (imputed)	N
614	chr6_qbl_hap6	3827436	3827437	rs74995702	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs affecting bone structure and mineralization)	6,143 East Asian ancestry cases, 172,583 East Asian ancestry controls	NA	6p21.32		rs74995702-G	0.152630075	8E-16		0.21422668	[0.16-0.27] unit increase	Illumina [13429980] (imputed)	N
614	chr6_qbl_hap6	3827520	3827521	rs9271556	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	6p21.32		rs9271556-T	0.355911	1E-10		0.0285997	[0.02-0.037] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3827696	3827697	rs9271573	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small LDL	115,082 European ancestry individuals	NA	6p21.32		rs9271573-A	0.406337	9E-24		0.0408933	[0.033-0.049] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3827696	3827697	rs9271573	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium LDL	115,082 European ancestry individuals	NA	6p21.32		rs9271573-A	0.406337	6E-23		0.0404102	[0.032-0.048] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3827696	3827697	rs9271573	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large LDL	115,082 European ancestry individuals	NA	6p21.32		rs9271573-A	0.406337	6E-20		0.0376072	[0.03-0.046] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3827696	3827697	rs9271573	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in LDL	115,082 European ancestry individuals	NA	6p21.32		rs9271573-A	0.406337	1E-21		0.0393213	[0.031-0.047] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3827696	3827697	rs9271573	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to monounsaturated fatty acids	115,006 European ancestry individuals	NA	6p21.32		rs9271573-A	0.406357	1E-12		0.0285962	[0.021-0.036] unit increase	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3827696	3827697	rs9271573	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Monounsaturated fatty acid levels	115,006 European ancestry individuals	NA	6p21.32		rs9271573-A	0.406357	4E-25		0.0428694	[0.035-0.051] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3827696	3827697	rs9271573	32231244	Xie J	2020-03-30	Nat Commun	The genetic architecture of membranous nephropathy and its potential to improve non-invasive diagnosis.	Membranous nephropathy	2,150 European ancestry cases, 5,829 European ancestry controls, 1,612 East Asian ancestry cases, 1,970 East Asian ancestry controls	826 Chinese ancestry cases, 1,239 Chinese ancestry controls	6p21.32	HLA	rs9271573-A	NR	3E-154		2.41	[2.26-2.57]	Illumina [~ 7000000] (imputed)	N
614	chr6_qbl_hap6	3827696	3827697	rs9271573	32231244	Xie J	2020-03-30	Nat Commun	The genetic architecture of membranous nephropathy and its potential to improve non-invasive diagnosis.	Membranous nephropathy	2,150 European ancestry cases, 5,829 European ancestry controls	NA	6p21.32	HLA	rs9271573-A	0.44	2E-60		2.06	[1.89-2.25]	Illumina [~ 7000000] (imputed)	N
614	chr6_qbl_hap6	3827696	3827697	rs9271573	32231244	Xie J	2020-03-30	Nat Commun	The genetic architecture of membranous nephropathy and its potential to improve non-invasive diagnosis.	Membranous nephropathy	1,612 East Asian ancestry cases, 1,970 East Asian ancestry controls	NA	6p21.32	HLA	rs9271573-A	0.35	4E-102		2.97	[2.69-3.28]	Illumina [~ 7000000] (imputed)	N
614	chr6_qbl_hap6	3827696	3827697	rs9271573	28076899	Taylor KE	2017-01-11	Arthritis Rheumatol	Genome-Wide Association Analysis Reveals Genetic Heterogeneity of Sjogren's Syndrome According to Ancestry.	Sjogren's syndrome	585 European ancestry cases, up to 51 African ancestry cases, up to 164 Hispanic/Native american cases, up to 570 Asian ancestry cases, up to 59 cases, 1,546 European ancestry controls, 495 African ancestry controls, 237 Hispanic/Native American controls, 306 Asian ancestry controls, 148 controls.	NA	6p21.32	HLA-DQA1, HLA-DQB1, HLA-DRB1	rs9271573-?		3E-42		2.02	[1.82-2.23]	Illumina [1444884]	N
614	chr6_qbl_hap6	3827696	3827697	rs9271573	28076899	Taylor KE	2017-01-11	Arthritis Rheumatol	Genome-Wide Association Analysis Reveals Genetic Heterogeneity of Sjogren's Syndrome According to Ancestry.	Sjogren's syndrome	585 European ancestry cases, 1,546 European ancestry controls	NA	6p21.32	HLA-DQA1, HLA-DQB1, HLA-DRB1, HLA-DQA2	rs9271573-?		3E-34		2.29	[2.01-2.62]	Illumina [1444884]	N
614	chr6_qbl_hap6	3827819	3827820	rs2395225	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs2395225-C	NR	3E-11		0.0204906	[0.014-0.027] unit decrease	Affymetrix [321169] (imputed)	N
614	chr6_qbl_hap6	3827830	3827831	rs9271578	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs9271578-A	NR	2E-24		0.0287397	[0.023-0.034] unit decrease	Affymetrix [319769] (imputed)	N
614	chr6_qbl_hap6	3827830	3827831	rs9271578	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs9271578-A	NR	3E-23		0.0280541	[0.023-0.034] unit decrease	Affymetrix [319769] (imputed)	N
614	chr6_qbl_hap6	3827830	3827831	rs9271578	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	6p21.32		rs9271578-T	0.501806	3E-49		0.037933793	[0.033-0.043] unit increase	Affymetrix [93095623] (imputed)	N
614	chr6_qbl_hap6	3827832	3827833	rs9271579	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic sinusitis	7,529 European ancestry cases, 444,966 European ancestry controls, 4,617 East Asian ancestry cases, 152,226 East Asian ancestry controls	NA	6p21.32		rs9271579-A	NR	4E-36		0.1984	[0.17-0.23] unit increase	Affymetrix, Illumina [25838895] (imputed)	N
614	chr6_qbl_hap6	3827836	3827837	rs9271580	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Nasal polyps	5,093 European ancestry cases, 444,966 European ancestry controls, 160 East Asian ancestry cases, 151,846 East Asian ancestry controls	NA	6p21.32		rs9271580-G	NR	2E-40		0.352	[0.3-0.4] unit increase	Affymetrix, Illumina [25837843] (imputed)	N
614	chr6_qbl_hap6	3827917	3827918	rs17533090	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs17533090-T	0.22	5E-9		4.5	[3.42-5.91]	Illumina [NR] (imputed)	N
614	chr6_qbl_hap6	3827930	3827931	rs35062987	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	6p21.32	intergenic	rs35062987-T	0.2102	2E-39		0.0418	[0.036-0.048] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
614	chr6_qbl_hap6	3827963	3827964	rs34831921	32678081	Timmers PRHJ	2020-07-16	Nat Commun	Multivariate genomic scan implicates novel loci and haem metabolism in human ageing.	Aging traits (healthspan, parental lifespan or longevity) (multivariate analysis)	at least 837,415 European ancestry individuals	NA	6p21.32	HLA-DRB1, HLA-DQA1	rs34831921-A	0.1	6E-13				NR [7320282]	N
614	chr6_qbl_hap6	3827963	3827964	rs34831921	29030599	Joshi PK	2017-10-13	Nat Commun	Genome-wide meta-analysis associates HLA-DQA1/DRB1 and LPA and lifestyle factors with human longevity.	Parental lifespan	up to 586,626 European ancestry individuals, up to 19,433 African ancestry individuals	NA	6p21.32	HLA-DQA1, HLA-DRB1	rs34831921-A	0.09	4E-8	(EA)	0.6	years increase	Affymetrix, Illumina [at least 13643373] (imputed)	N
614	chr6_qbl_hap6	3828074	3828075	rs9271585	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	6p21.32	HLA-DQA1	rs9271585-A	0.4121	3E-7	(East Asian)	0.03	[0.019-0.041] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
614	chr6_qbl_hap6	3828074	3828075	rs9271585	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	6p21.32	HLA-DQA1	rs9271585-A	0.3329	7E-12		0.0249	[0.018-0.032] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
614	chr6_qbl_hap6	3828074	3828075	rs9271585	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	6p21.32	NR	rs9271585-A	0.3502	8E-8	(men)	0.0311	[0.02-0.042] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
614	chr6_qbl_hap6	3828094	3828095	rs9271586	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.32		rs9271586-G	0.495	6E-115				Affymetrix [10369434] (imputed)	N
614	chr6_qbl_hap6	3828120	3828121	rs3129763	21779181	Gorlova O	2011-07-14	PLoS Genet	Identification of novel genetic markers associated with clinical phenotypes of systemic sclerosis through a genome-wide association strategy.	Systemic sclerosis	2,296 European ancestry cases, 5,172 European ancestry controls	3,175 European ancestry cases, 4,210 European ancestry controls	6p21.32	HLA-DRB1, HLA-DQA1	rs3129763-?	0.25	1E-11	(ATA positive)	1.65	[1.42-1.91]	Illumina [NR] (imputed)	N
614	chr6_qbl_hap6	3828148	3828149	rs9271588	31879220	Lin GW	2019-12-23	Lancet Oncol	Genetic risk of extranodal natural killer T-cell lymphoma: a genome-wide association study in multiple populations.	Extranodal natural killer T-cell lymphoma (nasal type)	700 Han Chinese ancestry cases, 7,752 Han Chinese ancestry controls	717 East Asian ancestry cases, 12,650 East Asian ancestry controls	6p21.32	HLA-DRB1	rs9271588-C	0.4	9E-26		1.53	[1.41-1.65]	Illumina [3892410] (imputed)	N
614	chr6_qbl_hap6	3828148	3828149	rs9271588	31301374	Noguchi E	2019-07-10	J Allergy Clin Immunol	HLA-DQ and RBFOX1 as susceptibility genes for an outbreak of hydrolyzed wheat allergy.	Hydrolysed wheat protein allergy	452 Japanese ancestry cases, 2,700 Japaneses ancestry controls	45 Japanese ancestry cases, 326 Japaneses ancestry controls	6p21.32	NR	rs9271588-G	0.523	1E-26		2.3	[1.98-2.70]	Illumina [6575663] (imputed)	N
614	chr6_qbl_hap6	3828148	3828149	rs9271588	31102405	Labreche K	2019-05-17	Neuro Oncol	A genome-wide association study identifies susceptibility loci for primary central nervous system lymphoma at 6p25.3 and 3p22.1: a LOC network study.	Primary central nervous system lymphoma	475 European ancestry cases, 1,134 European ancestry controls	NA	6p21.32	NR	rs9271588-?	NR	2E-6		1.45	[1.25-1.68]	Illumina [> 10000000] (imputed)	N
614	chr6_qbl_hap6	3828148	3828149	rs9271588	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	6p21.32	intergenic	rs9271588-C	0.5051	4E-66		0.06142442	[0.054-0.068] unit increase	Affymetrix [~ 2500000] (imputed)	N
614	chr6_qbl_hap6	3828148	3828149	rs9271588	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	6p21.32	intergenic	rs9271588-C	0.5051	2E-58		0.0576552	[0.051-0.065] unit increase	Affymetrix [~ 2500000] (imputed)	N
614	chr6_qbl_hap6	3828148	3828149	rs9271588	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	6p21.32	intergenic	rs9271588-C	0.5051	1E-58		0.05764791	[0.051-0.065] unit increase	Affymetrix [~ 2500000] (imputed)	N
614	chr6_qbl_hap6	3828148	3828149	rs9271588	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	6p21.32	intergenic	rs9271588-C	0.5051	9E-68		0.06247162	[0.055-0.07] unit increase	Affymetrix [~ 2500000] (imputed)	N
614	chr6_qbl_hap6	3828148	3828149	rs9271588	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	6p21.32	intergenic	rs9271588-C	0.5051	2E-66		0.06164672	[0.055-0.069] unit increase	Affymetrix [~ 2500000] (imputed)	N
614	chr6_qbl_hap6	3828148	3828149	rs9271588	24097066	Li Y	2013-10-06	Nat Genet	A genome-wide association study in Han Chinese identifies a susceptibility locus for primary Sjogren's syndrome at 7q11.23.	Sjogren's syndrome	542 Han Chinese ancestry cases, 1,050 Han Chinese ancestry controls	1,303 Han Chinese ancestry cases, 2,727 Han Chinese ancestry controls	6p21.32	HLA-DRB1, HLA-DQA1, c6orf10, BTNL2, HLA-DRA, HLA-DRB5, HLA-DRB6	rs9271588-T	0.532	9E-37		1.75	[1.59-1.89]	Affymetrix [556134]	N
614	chr6_qbl_hap6	3828253	3828254	rs17599077	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs17599077-C	0.19	2E-8		4.08	[3.13-5.32]	Illumina [NR] (imputed)	N
614	chr6_qbl_hap6	3828393	3828394	rs9271593	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs9271593-C	NR	4E-12		0.0198725	[0.014-0.025] unit increase	Affymetrix [321016] (imputed)	N
614	chr6_qbl_hap6	3828443	3828444	rs34967069	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Tumor necrosis factor receptor superfamily member 6 levels	21,758 European ancestry individuals	9,173 individuals	6p21.32		rs34967069-T	0.12	3E-20		0.1381	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
614	chr6_qbl_hap6	3828443	3828444	rs34967069	30642433	Timmers PR	2019-01-15	Elife	Genomics of 1 million parent lifespans implicates novel pathways and common diseases and distinguishes survival chances.	Parental lifespan	at least 500,193 European ancestry offspring	NA	6p21.32	HLA-DQA1	rs34967069-T	0.07	4E-9		0.5613	[0.37-0.75] years increase	NR [up to 9000000] (imputed)	N
614	chr6_qbl_hap6	3828486	3828487	rs9271597	30674883	Jin Y	2019-01-23	Nat Commun	Early-onset autoimmune vitiligo associated with an enhancer variant haplotype that upregulates class II HLA expression.	Vitiligo (late onset)	1,467 European ancestry cases, 19,156 European ancestry controls	977 European ancestry cases, 727 European ancestry controls	6p21.32	NR	rs9271597-A	NR	4E-34		1.63	[1.55-1.71]	NR [up to 494043] (imputed)	N
614	chr6_qbl_hap6	3828486	3828487	rs9271597	30674883	Jin Y	2019-01-23	Nat Commun	Early-onset autoimmune vitiligo associated with an enhancer variant haplotype that upregulates class II HLA expression.	Vitiligo (early onset)	704 European ancestry cases, 9,031 European ancestry controls	375 European ancestry cases, 1,455 European ancestry controls	6p21.32	NR	rs9271597-A	NR	2E-40		2.23	[2.11-2.35]	NR [up to 494043] (imputed)	N
614	chr6_qbl_hap6	3828486	3828487	rs9271597	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	Factor VIII levels	25,897 European ancestry individuals, 4,500 African American individuals, 773 Asian ancestry individuals, 1,440 Hispanic individuals	NA	6p21.32	HLA-DQA1	rs9271597-A	0.42	6E-6	(EA)	0.0137	[0.0084-0.019] unit decrease	Affymetrix, Illumina [13887196] (imputed)	N
614	chr6_qbl_hap6	3828486	3828487	rs9271597	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	Factor VIII levels	25,897 European ancestry individuals, 4,500 African American individuals, 773 Asian ancestry individuals, 1,440 Hispanic individuals	NA	6p21.32	HLA-DQA1	rs9271597-A	0.41	1E-8		0.0152	[0.0099-0.0205] unit decrease	Affymetrix, Illumina [13887196] (imputed)	N
614	chr6_qbl_hap6	3828486	3828487	rs9271597	27723757	Jin Y	2016-11-01	Nat Genet	Genome-wide association studies of autoimmune vitiligo identify 23 new risk loci and highlight key pathways and regulatory variants.	Vitiligo	2,853 European ancestry cases and 37,405 European ancestry controls	1,827 European ancestry cases and 2,181 European ancestry controls	6p21.32	HLA-DRB1, HLA-DQA1	rs9271597-A	0.4269	3E-89		1.772	NR	Illumina [8966411] (imputed)	N
614	chr6_qbl_hap6	3828509	3828509	rs144158892	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	6p21.32	HLA-DQA1	rs144158892-ATCT	0.504957	2E-12		0.015783602	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
614	chr6_qbl_hap6	3828623	3828624	rs3129765	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	FSC-A on CD4+ T cell	3,113 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs3129765-G	0.75653	1E-10		0.2158	[0.15-0.28] unit decrease	Illumina [18030777] (imputed)	N
614	chr6_qbl_hap6	3828643	3828644	rs9271605	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	6p21.32		rs9271605-A	0.35118	1E-6		0.034564	[0.021-0.049] unit increase	Affymetrix [15580782] (imputed)	N
614	chr6_qbl_hap6	3828664	3828665	rs112396255	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs112396255-G	0.22	5E-9		4.5	[3.42-5.91]	Illumina [NR] (imputed)	N
614	chr6_qbl_hap6	3828763	3828764	rs73728618	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs73728618-T	NR	6E-33		1.481	[1.389-1.58]	Affymetrix [7846216] (imputed)	N
614	chr6_qbl_hap6	3828784	3828785	rs9271608	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	up to 92,771 European ancestry males, up to 113,387 European ancestry females	NA	6p21.32	HLA-DQA1	rs9271608-G	0.22	2E-17		0.042	[0.032-0.052] unit increase	Affymetrix, Illumina, Perlegen [2437193] (imputed)	N
614	chr6_qbl_hap6	3828805	3828806	rs9271611	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	6p21.32	NR	rs9271611-G	0.41	5E-19		1.16	[1.12-1.2]	Illumina [8468885] (imputed)	N
614	chr6_qbl_hap6	3828805	3828806	rs9271611	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Keratinocyte cancer (MTAG)	at least 18,538 European ancestry cases, at least 340,302 European ancestry controls	NA	6p21.32	HLA-DQA1	rs9271611-G	0.379011	2E-22		1.09	[1.07-1.11]	Affymetrix [7600000] (imputed)	N
614	chr6_qbl_hap6	3829039	3829040	rs9271622	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	T cell Absolute Count	3,653 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9271622-A	0.7302	2E-10		0.2154	[0.15-0.28] unit increase	Illumina [18427377] (imputed)	N
614	chr6_qbl_hap6	3829170	3829171	rs9271629	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Lymphocyte Absolute Count	3,653 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9271629-A	0.71717	2E-8		0.1945	[0.13-0.26] unit increase	Illumina [18427377] (imputed)	N
614	chr6_qbl_hap6	3829381	3829382	rs9271640	25616667	Goris A	2015-01-22	Brain	Genetic variants are major determinants of CSF antibody levels in multiple sclerosis.	Oligoclonal band status in multiple sclerosis	2,232 European ancestry OCB positive individuals, 275 European ancestry OCB negative individuals, 439 OCB positive individuals, 80 OCB negative individuals	3,026 OCB positive individuals, 452 OCB negative individuals	6p21.32	HLA-DRB1	rs9271640-A	NR	5E-12		1.56	[1.38-1.77]	NR [485522]	N
614	chr6_qbl_hap6	3829381	3829382	rs9271640	23472185	Mero IL	2013-03-05	PLoS One	Oligoclonal band status in Scandinavian multiple sclerosis patients is associated with specific genetic risk alleles.	Multiple sclerosis (OCB status)	1,367 European ancestry OCB positive cases, 161 European ancestry OCB negative cases, 428 European ancestry controls	NA	6p21.32	HLA-DQA1	rs9271640-?	NR	2E-20	(OCB positive vs. controls)	2.37	[1.97-2.84]	Illumina [495970]	N
614	chr6_qbl_hap6	3829400	3829401	rs9271642	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in IDL	115,082 European ancestry individuals	NA	6p21.32		rs9271642-A	0.407279	2E-21		0.0389581	[0.031-0.047] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3829400	3829401	rs9271642	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	6p21.32		rs9271642-A	0.407279	9E-12		0.028651	[0.02-0.037] unit increase	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3829400	3829401	rs9271642	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6p21.32	HLA-DQA1	rs9271642-G	0.59407	9E-33		0.032831848	[0.027-0.038] unit increase	Affymetrix [93095623] (imputed)	N
614	chr6_qbl_hap6	3831475	3831475	rs9281962	33143745	Andlauer TFM	2020-11-04	BMC Med	Treatment- and population-specific genetic risk factors for anti-drug antibodies against interferon-beta: a GWAS.	Binding antibody response to interferon beta therapy in multiple sclerosis (antibody levels; IFN?-1a subcutaneous)	up to 2,000 German and Swedish ancestry individuals	up to 757 German and Swedish ancestry individuals	6p21.32		rs9281962-T	0.44	5E-32		0.5091026	[0.42-0.59] unit increase	Illumina [8550834] (imputed)	N
614	chr6_qbl_hap6	3831530	3831531	rs116352702	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs116352702-A	0.954	8E-18	(conditional)	0.543	[0.4-0.68]	Illumina [11270530] (imputed)	N
614	chr6_qbl_hap6	3831969	3831970	rs3104389	32769997	Zhou W	2020-08-07	Nat Commun	GWAS of thyroid stimulating hormone highlights pleiotropic effects and inverse association with thyroid cancer.	Thyroid stimulating hormone levels	119,715 European ancestry individuals	NA	6p21.32	HLA-DRB1, HLA-DQA1	rs3104389-A	0.424293733420786	6E-12		0.0623	[0.045-0.08] SD increase	Illumina [22400000] (imputed)	N
614	chr6_qbl_hap6	3831989	3831990	rs9271853	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C11orf87	5,363 Icelandic ancestry individuals	NA	6p21.32		rs9271853-T	0.3105	7E-12		0.135762	[0.097-0.175] unit decrease	Illumina [7506463] (imputed)	N
614	chr6_qbl_hap6	3832085	3832086	rs9271858	23291585	Fakiola M	2013-01-06	Nat Genet	Common variants in the HLA-DRB1-HLA-DQA1 HLA class II region are associated with susceptibility to visceral leishmaniasis.	Leishmaniasis (visceral)	989 Indian ancestry cases, 1,089 Indian ancestry controls, 357 Brazilian ancestry cases, 1,613 Brazilian ancestry unaffected relatives	951 Indian ancestry cases, 990 Indian ancestry controls	6p21.32	HLA, HLA-DRB1, HLA-DQA1	rs9271858-G	0.39	3E-17		1.41	[1.30-1.52]	Illumina [521134]	N
614	chr6_qbl_hap6	3832138	3832139	rs28362132	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CCL19	5,367 Icelandic ancestry individuals	NA	6p21.32		rs28362132-T	0.0511	8E-36		0.540362	[0.46-0.63] unit increase	Illumina [7506463] (imputed)	N
614	chr6_qbl_hap6	3832436	3832437	rs9271880	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs9271880-C	NR	2E-10		0.0194381	[0.013-0.025] unit decrease	Affymetrix [319769] (imputed)	N
614	chr6_qbl_hap6	3832436	3832437	rs9271880	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs9271880-C	NR	5E-10		0.0190783	[0.013-0.025] unit decrease	Affymetrix [319769] (imputed)	N
614	chr6_qbl_hap6	3833384	3833385	rs9271925	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	6p21.32	HLA-DQA1	rs9271925-G	0.3014	3E-9		0.0266219	[0.018-0.035] unit decrease	Affymetrix [~ 2500000] (imputed)	N
614	chr6_qbl_hap6	3833567	3833567	rs9281971	33143745	Andlauer TFM	2020-11-04	BMC Med	Treatment- and population-specific genetic risk factors for anti-drug antibodies against interferon-beta: a GWAS.	Neutralising antibody response to interferon beta therapy in multiple sclerosis (presence of antibodies; all treatment preparations)	up to 2,000 German and Swedish ancestry individuals	up to 757 German and Swedish ancestry individuals	6p21.32		rs9281971-TTTTTTT	0.36	2E-17		0.6	[-0.46--0.74] unit decrease	Illumina [8550834] (imputed)	N
614	chr6_qbl_hap6	3833567	3833567	rs9281971	33143745	Andlauer TFM	2020-11-04	BMC Med	Treatment- and population-specific genetic risk factors for anti-drug antibodies against interferon-beta: a GWAS.	Neutralising antibody response to interferon beta therapy in multiple sclerosis (antibody titre; all treatment preparations)	up to 2,000 German and Swedish ancestry individuals	up to 757 German and Swedish ancestry individuals	6p21.32		rs9281971-TTTTTTT	NR	2E-17		0.16	[-0.12--0.2] unit decrease	Illumina [8550834] (imputed)	N
614	chr6_qbl_hap6	3833864	3833865	rs3129769	26272072	Jiang X	2015-08-13	Rheumatology (Oxford)	An Immunochip-based interaction study of contrasting interaction effects with smoking in ACPA-positive versus ACPA-negative rheumatoid arthritis.	ACPA-positive rheumatoid arthritis (smoking interaction)	340 European ancestry never-smoker cases, 493 European ancestry ever-smoker cases, 746 European ancestry never-smoker controls, 994 European ancestry ever-smoker controls	187 European ancestry never-smoker cases, 421 European ancestry ever-smoker cases, 461 European ancestry never-smoker controls, 447 European ancestry ever-smoker controls	6p21.32	NR	rs3129769-?	NR	3E-11	(adjusted for HLA shared epitope)	1.724138	[1.33-2.44]	Illumina [133648] (imputed)	N
614	chr6_qbl_hap6	3833930	3833931	rs13211653	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total esterified cholesterol levels	115,082 European ancestry individuals	NA	6p21.32		rs13211653-A	0.854201	3E-14		0.0430803	[0.032-0.054] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3833930	3833931	rs13211653	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol levels	115,082 European ancestry individuals	NA	6p21.32		rs13211653-A	0.854201	4E-15		0.0445562	[0.033-0.056] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3833930	3833931	rs13211653	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Sphingomyelin levels	115,006 European ancestry individuals	NA	6p21.32		rs13211653-A	0.854236	6E-9		0.0319032	[0.021-0.043] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3833937	3833938	rs9271947	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	6p21.32		rs9271947-T	NR	5E-12		0.0142	[0.01-0.018] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
614	chr6_qbl_hap6	3834180	3834181	rs114798579	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	6p21.32	NR	rs114798579-?	NR	7E-19	(conditional)			Affymetrix [15688218] (imputed)	N
614	chr6_qbl_hap6	3834274	3834275	rs140145058	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large LDL	115,082 European ancestry individuals	NA	6p21.32		rs140145058-A	0.864668	1E-15		0.0486929	[0.037-0.061] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3834274	3834275	rs140145058	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	LDL cholesterol levels	115,082 European ancestry individuals	NA	6p21.32		rs140145058-A	0.864668	7E-16		0.0494415	[0.037-0.061] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3834274	3834275	rs140145058	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large LDL	115,082 European ancestry individuals	NA	6p21.32		rs140145058-A	0.864668	1E-15		0.048909	[0.037-0.061] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3834274	3834275	rs140145058	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large LDL	115,082 European ancestry individuals	NA	6p21.32		rs140145058-A	0.864668	2E-15		0.0482138	[0.036-0.06] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3834870	3834871	rs146668528	29785011	Zhu Z	2018-05-21	Nat Genet	A genome-wide cross-trait analysis from UK Biobank highlights the shared genetic architecture of asthma and allergic diseases.	Allergic disease (asthma, hay fever or eczema)	25,685 European ancestry allergic diseases cases, 76,768 European ancestry controls	NA	6p21.32	HLA-DQA1	rs146668528-?	NR	5E-12		1.1904762	[1.12-1.25]	Affymetrix [74888535] (imputed)	N
614	chr6_qbl_hap6	3834932	3834933	rs1281943	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs1281943-C	NR	2E-10		0.0328506	[0.023-0.043] unit increase	Affymetrix [321169] (imputed)	N
614	chr6_qbl_hap6	3835915	3835916	rs9461780	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	6p21.32	HLA-DQA1	rs9461780-T	0.075286	3E-15		0.033892684	[0.025-0.042] unit increase	Affymetrix [93095623] (imputed)	N
614	chr6_qbl_hap6	3835925	3835926	rs9272050	33794208	Bowden SJ	2021-04-01	Lancet Oncol	Genetic variation in cervical preinvasive and invasive disease: a genome-wide association study.	Cervical intraepithelial neoplasia grade 3 and invasive cervical cancer	764 European ancestry invasive cervical cancer cases, 4,005 European ancestry cervical intraepithelial neoplasia grade 3 cases, 145,545 European ancestry controls	NA	6p21.32	HLA-DQA1	rs9272050-?	NR	3E-28		1.27	[1.21-1.32]	Affymetrix [9600464] (imputed)	N
614	chr6_qbl_hap6	3835925	3835926	rs9272050	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cervical cancer	6,563 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs9272050-G	NR	1E-39		1.267	NR	Affymetrix [7846216] (imputed)	N
614	chr6_qbl_hap6	3835925	3835926	rs9272050	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p21.32	HLA-DRB1	rs9272050-G	0.38	1E-30		1.19	[1.17-1.21] unit increase	Illumina [at least 560000] (imputed)	N
614	chr6_qbl_hap6	3836341	3836342	rs9272071	33143745	Andlauer TFM	2020-11-04	BMC Med	Treatment- and population-specific genetic risk factors for anti-drug antibodies against interferon-beta: a GWAS.	Binding antibody response to interferon beta therapy in multiple sclerosis (antibody levels; all treatment preparations)	up to 2,000 German and Swedish ancestry individuals	up to 757 German and Swedish ancestry individuals	6p21.32		rs9272071-C	0.32	5E-18		0.22615278	[-0.17--0.28] unit decrease	Illumina [8550834] (imputed)	N
614	chr6_qbl_hap6	3836833	3836834	rs9272105	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	6p21.32	NR	rs9272105-?	NR	5E-12				Affymetrix [~ 8270000] (imputed)	N
614	chr6_qbl_hap6	3836833	3836834	rs9272105	22807686	Li S	2012-07-12	PLoS Genet	GWAS identifies novel susceptibility loci on 6p21.32 and 21q21.3 for hepatocellular carcinoma in chronic hepatitis B virus carriers.	Hepatocellular carcinoma	1,538 Han Chinese ancestry HBV-positive HCC cases, 1,465 Han Chinese ancestry chronic HBV carriers	4,431 Han Chinese ancestry HBV-positive HCC cases, 4,725 Han Chinese ancestry chronic HBV carriers	6p21.32	HLA-DRB1, HLA-DQA1	rs9272105-A	0.45	5E-22		1.28	[1.22-1.35]	NR [523663]	N
614	chr6_qbl_hap6	3836833	3836834	rs9272105	21502966	Weber F	2011-04-19	Pharmacogenomics J	Single-nucleotide polymorphisms in HLA- and non-HLA genes associated with the development of antibodies to interferon-? therapy in multiple sclerosis patients.	Response to interferon beta therapy	178 European ancestry antibody-positive individuals, 184 European ancestry antibody-negative individuals	350 European ancestry antibody-positive individuals, 468 European ancestry antibody-negative individuals	6p21.32	HLA-DRB1, HLA-DQA1	rs9272105-A	0.44	4E-10		0.26	[NR] unit increase	Illumina [~ 317000]	N
614	chr6_qbl_hap6	3836837	3836838	rs3104376	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	6p21.32	Intergenic	rs3104376-T	NR	2E-28		0.0514741	[0.042-0.061] unit increase	Illumina [13520550] (imputed)	N
614	chr6_qbl_hap6	3836891	3836892	rs35242582	28029757	Merkel PA	2016-12-28	Arthritis Rheumatol	Identification of Functional and Expression Polymorphisms Associated With Risk for Antineutrophil Cytoplasmic Autoantibody-Associated Vasculitis.	Antineutrophil cytoplasmic antibody-associated vasculitis	1,015 European ancestry granulomatosis with polyangiitis cases, 206 European ancestry microscopic polyangiitis cases, 3,258 European ancestry controls.	541 European ancestry granulomatosis with polyangiitis cases, 30 European ancestry microscopic polyangiitis cases, 1,465 European ancestry controls.	6p21.32	HLA-DQA1	rs35242582-A	0.74	6E-23		1.6	1.46-1.76	Affymetrix [at least 333035] (imputed)	N
614	chr6_qbl_hap6	3837209	3837210	rs3104373	27386562	Andlauer TF	2016-06-17	Sci Adv	Novel multiple sclerosis susceptibility loci implicated in epigenetic regulation.	Multiple sclerosis	4,888 German ancestry cases, 10,395 German ancestry controls	2,903 Sardinian ancestry cases, 3,323 Sardinian ancestry controls	6p21.32	HLA-DRB1	rs3104373-T		1E-234		2.9	[2.72-3.09]	Illumina [at least 8143088] (imputed)	N
614	chr6_qbl_hap6	3837238	3837239	rs9272116	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Creatinine levels	110,051 European ancestry individuals	NA	6p21.32		rs9272116-T	0.506915	1E-15		0.0282801	[0.021-0.035] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3837418	3837419	rs13214992	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	6p21.32	intergenic	rs13214992-A	0.0562	3E-29		0.1055	[0.087-0.124] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
614	chr6_qbl_hap6	3837504	3837505	rs9272131	30450575	Hojfeldt SG	2018-11-18	Br J Haematol	Genetic predisposition to PEG-asparaginase hypersensitivity in children treated according to NOPHO ALL2008.	PEG-asparaginase hypersensitivity without enzyme activity in childhood acute lymphoblastic leukaemia	59 European ancestry cases, 772 European ancestry controls	NA	6p21.32	HLA-DQA1, HLA-DQB1, HLA-DRB1	rs9272131-T	0.11	9E-6		3.01	[1.85-4.91]	Illumina [NR]	N
614	chr6_qbl_hap6	3837635	3837636	rs9272143	28806749	Leo PJ	2017-08-14	PLoS Genet	Defining the genetic susceptibility to cervical neoplasia-A genome-wide association study.	Cervical cancer	2,866 European ancestry cases, 6,481 European ancestry controls	NA	6p21.32	HLA-DRB1	rs9272143-?	NR	5E-15		1.3513513	[NR]	Illumina [10863230] (imputed)	N
614	chr6_qbl_hap6	3837635	3837636	rs9272143	23482656	Chen D	2013-03-12	J Natl Cancer Inst	Genome-wide association study of susceptibility loci for cervical cancer.	Cervical cancer	1,034 European ancestry cases, 3,948 European ancestry controls	1,140 European ancestry cases, 1,058 European ancestry controls	6p21.32	HLA-DRB1, HLA-DQA1	rs9272143-?	NR	3E-22		1.49	[1.37-1.61]	Illumina [632668]	N
614	chr6_qbl_hap6	3837851	3837852	rs9272154	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p21.32	NR	rs9272154-?	NR	9E-12		0.0937	[0.067-0.121] unit increase	Illumina [at least 560000] (imputed)	N
614	chr6_qbl_hap6	3838120	3838121	rs72848251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs72848251-G	0.805325	4E-21		0.0493811	[0.039-0.06] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3838120	3838121	rs72848251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Remnant cholesterol (non-HDL, non-LDL -cholesterol)	115,082 European ancestry individuals	NA	6p21.32		rs72848251-G	0.805325	8E-20		0.0484938	[0.038-0.059] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3838120	3838121	rs72848251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of apolipoprotein B to apolipoprotein A1 levels	115,082 European ancestry individuals	NA	6p21.32		rs72848251-G	0.805325	6E-19		0.0468108	[0.036-0.057] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3838120	3838121	rs72848251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs72848251-G	0.805325	1E-22		0.0513513	[0.041-0.062] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3838120	3838121	rs72848251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs72848251-G	0.805325	2E-21		0.0496998	[0.039-0.06] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3838120	3838121	rs72848251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very small VLDL particles	115,082 European ancestry individuals	NA	6p21.32		rs72848251-G	0.805325	2E-20		0.048766	[0.038-0.059] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3838120	3838121	rs72848251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large LDL particles	115,082 European ancestry individuals	NA	6p21.32		rs72848251-G	0.805325	2E-23		0.0532642	[0.043-0.064] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3838120	3838121	rs72848251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of LDL particles	115,082 European ancestry individuals	NA	6p21.32		rs72848251-G	0.805325	2E-22		0.0522239	[0.042-0.063] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3838120	3838121	rs72848251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in VLDL	115,082 European ancestry individuals	NA	6p21.32		rs72848251-G	0.805325	4E-26		0.0566218	[0.046-0.067] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3838120	3838121	rs72848251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs72848251-G	0.805325	1E-17		0.0444632	[0.034-0.055] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3838120	3838121	rs72848251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	6p21.32		rs72848251-G	0.805325	4E-24		0.0541049	[0.044-0.065] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3838120	3838121	rs72848251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein B levels	115,082 European ancestry individuals	NA	6p21.32		rs72848251-G	0.805325	4E-22		0.0517157	[0.041-0.062] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3838120	3838121	rs72848251	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	6p21.32	HLA-DQA1	rs72848251-G	0.804518	1E-38		0.0349134	[0.03-0.04] unit decrease	Affymetrix [NR] (imputed)	N
614	chr6_qbl_hap6	3838642	3838643	rs147841808	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in IDL	115,082 European ancestry individuals	NA	6p21.32		rs147841808-C	0.867699	2E-14		0.0459272	[0.034-0.058] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3838642	3838643	rs147841808	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large LDL	115,082 European ancestry individuals	NA	6p21.32		rs147841808-C	0.867699	2E-15		0.0492534	[0.037-0.061] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3838642	3838643	rs147841808	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in IDL	115,082 European ancestry individuals	NA	6p21.32		rs147841808-C	0.867699	8E-17		0.0499703	[0.038-0.062] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3838642	3838643	rs147841808	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small LDL	115,082 European ancestry individuals	NA	6p21.32		rs147841808-C	0.867699	2E-13		0.0454527	[0.033-0.058] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3838642	3838643	rs147841808	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large LDL	115,082 European ancestry individuals	NA	6p21.32		rs147841808-C	0.867699	3E-14		0.0463596	[0.034-0.058] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3838642	3838643	rs147841808	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in LDL	115,082 European ancestry individuals	NA	6p21.32		rs147841808-C	0.867699	3E-14		0.0468543	[0.035-0.059] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3838642	3838643	rs147841808	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in IDL	115,082 European ancestry individuals	NA	6p21.32		rs147841808-C	0.867699	4E-14		0.0455951	[0.034-0.057] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3838642	3838643	rs147841808	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Clinical LDL cholesterol levels	115,082 European ancestry individuals	NA	6p21.32		rs147841808-C	0.867699	4E-16		0.0503325	[0.038-0.062] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3838642	3838643	rs147841808	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium VLDL	115,082 European ancestry individuals	NA	6p21.32		rs147841808-C	0.867699	7E-22		0.0592176	[0.047-0.071] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3838642	3838643	rs147841808	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in IDL	115,082 European ancestry individuals	NA	6p21.32		rs147841808-C	0.867699	2E-12		0.0422918	[0.031-0.054] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3838642	3838643	rs147841808	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in IDL	115,082 European ancestry individuals	NA	6p21.32		rs147841808-C	0.867699	5E-13		0.0434275	[0.032-0.055] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3838788	3838789	rs553685714	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	6p21.32	HLA-DQA1	rs553685714-G	0.00566900000000004	5E-30		0.24839339	[0.21-0.29] unit increase	Affymetrix [93095623] (imputed)	N
614	chr6_qbl_hap6	3838788	3838789	rs553685714	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	6p21.32	HLA-DQA1	rs553685714-G	0.005664	1E-34		0.2682929	[0.23-0.31] unit decrease	Affymetrix [93095623] (imputed)	N
614	chr6_qbl_hap6	3838977	3838978	rs3104371	34536413	Daya M	2021-09-15	J Allergy Clin Immunol	Multi-ethnic genome-wide and HLA association study of total serum IgE.	IgE levels	5,008 African American individuals, 12,908 European ancestry individuals, 3,985 Hispanic individuals	NA	6p21.32		rs3104371-G	0.17	4E-18				Affymetrix, Illumina [NR] (imputed)	N
614	chr6_qbl_hap6	3839109	3839110	rs9272219	32792643	Romero-Hidalgo S	2020-08-13	Sci Rep	Native American ancestry significantly contributes to neuromyelitis optica susceptibility in the admixed Mexican population.	Neuromyelitis optica	164 Mexican cases, 1,208 Mexican controls	NA	6p21.32	HLA-DQA1	rs9272219-A	0.42	8E-10		2.48	[1.86-3.32]	Illumina [252805]	N
614	chr6_qbl_hap6	3839109	3839110	rs9272219	19571809	Shi J	2009-07-01	Nature	Common variants on chromosome 6p22.1 are associated with schizophrenia.	Schizophrenia	2,681 European ancestry cases, 2,653 European ancestry controls, 1,286 African American cases, 973 African American controls	5,327 European ancestry cases, 16,424 European ancestry controls	6p21.32	HLA-DQA1	rs9272219-G	0.72	7E-8	(EA)	1.14	[NR]	Affymetrix [up to 843798]	N
614	chr6_qbl_hap6	3839236	3839237	rs9272226	34212547	An J	2021-07-01	Allergy Asthma Immunol Res	Genome-Wide Association Study of Korean Asthmatics: A Comparison With UK Asthmatics.	Adult asthma	1,386 Korean ancestry cases, 5,205 Korean ancestry controls	NA	6p21.32		rs9272226-C	0.43	6E-7		1.27	[1.16-1.4]	Affymetrix [4922160] (imputed)	N
614	chr6_qbl_hap6	3839322	3839323	rs3104369	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CXCL2;CXCL3	5,366 Icelandic ancestry individuals	NA	6p21.32		rs3104369-T	0.3681	6E-26		0.203573	[0.17-0.24] unit increase	Illumina [7506463] (imputed)	N
614	chr6_qbl_hap6	3839322	3839323	rs3104369	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD45RA+ CD8+ T cell Absolute Count	3,395 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs3104369-C	0.7732	1E-9		0.1747	[0.12-0.23] unit increase	Illumina [18332267] (imputed)	N
614	chr6_qbl_hap6	3839322	3839323	rs3104369	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs3104369-?	NR	1E-11				Affymetrix [~ 8270000] (imputed)	N
614	chr6_qbl_hap6	3839322	3839323	rs3104369	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Adult onset asthma or type 2 diabetes	33,418 European ancestry asthma cases, 393,186 European ancestry asthma controls, 159,208 European ancestry diabetes cases and controls	NA	6p21.32	NR	rs3104369-?	NR	9E-15				Affymetrix [up to 8270000] (imputed)	N
614	chr6_qbl_hap6	3839323	3839324	rs17205170	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	6p21.32	HLA-DQA1	rs17205170-?	NR	1E-44		0.0464	[0.041-0.052] unit increase	Affymetrix [5701386] (imputed)	N
614	chr6_qbl_hap6	3839471	3839472	rs17205212	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	334,468 European ancestry, NR ancestry individuals	NA	6p21.32		rs17205212-?	NR	5E-8				Affymetrix [NR] (imputed)	N
614	chr6_qbl_hap6	3839506	3839506	rs139299944	33204752	Butler-Laporte G	2020-09-24	Open Forum Infect Dis	Genetic Determinants of Antibody-Mediated Immune Responses to Infectious Diseases Agents: A Genome-Wide and HLA Association Study.	Human herpes virus 7 U14 antibody levels	8,528 White British ancestry individuals	NA	6p21.32	HLA-DQA1	rs139299944-C	0.658	4E-12		0.11	[0.079-0.141] unit increase	NR [25472218] (imputed)	N
614	chr6_qbl_hap6	3839630	3839631	rs9272242	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4 on Effector Memory CD4+ T cell	2,912 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9272242-C	0.6302	4E-12		0.2215	[0.16-0.28] unit increase	Illumina [17945888] (imputed)	N
614	chr6_qbl_hap6	3839704	3839705	rs9272245	33794208	Bowden SJ	2021-04-01	Lancet Oncol	Genetic variation in cervical preinvasive and invasive disease: a genome-wide association study.	Cervical intraepithelial neoplasia grade 3	4,005 European ancestry cases, 145,545 European ancestry controls	NA	6p21.32	HLA-DQA1	rs9272245-?	NR	5E-12		1.44	[1.30-1.60]	Affymetrix [9600464] (imputed)	N
614	chr6_qbl_hap6	3839839	3839840	rs2040406	20453840	Sanna S	2010-05-09	Nat Genet	Variants within the immunoregulatory CBLB gene are associated with multiple sclerosis.	Multiple sclerosis	882 Sardinian cases, 872 Sardinian controls	1,775 Sardinian cases, 2,005 Sardinian controls	6p21.32	HLA-DQB1, HLA-DRB	rs2040406-G	0.26	1E-20		2.05	[NR]	Affymetrix [6607266] (imputed)	N
614	chr6_qbl_hap6	3840009	3840010	rs28393315	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	6p21.32		rs28393315-A	0.739	9E-22				Affymetrix [10369434] (imputed)	N
614	chr6_qbl_hap6	3840127	3840128	rs9272263	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DQA1	rs9272263-C	NR	2E-12		0.0278269	[0.02-0.036] unit decrease	Affymetrix [323858] (imputed)	N
614	chr6_qbl_hap6	3840127	3840128	rs9272263	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	HLA-DQA1	rs9272263-A	NR	6E-10		0.0226602	[0.015-0.03] unit decrease	Affymetrix [127266] (imputed)	N
614	chr6_qbl_hap6	3840127	3840128	rs9272263	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p21.32	HLA-DQA1	rs9272263-C	NR	2E-8		0.0221565	[0.014-0.03] unit decrease	Affymetrix [323858] (imputed)	N
614	chr6_qbl_hap6	3840153	3840154	rs62404084	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antihistamines for systemic use)	13,984 European ancestry cases, 137,652 European ancestry controls, 10,163 East Asian ancestry cases, 168,563 East Asian ancestry controls	NA	6p21.32		rs62404084-T	NR	5E-11		0.0852	[0.06-0.11] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
614	chr6_qbl_hap6	3840153	3840154	rs62404084	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6p21.32	NR	rs62404084-C	0.8069	1E-43		1.1116052	[1.1-1.13]	Affymetrix [15688218] (imputed)	N
614	chr6_qbl_hap6	3840316	3840317	rs3104367	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Asthma	28,399 European ancestry cases, 128,843 European ancestry controls	NA	6p21.32	HLA-DRB5, HLA-DQA1	rs3104367-?	NR	1E-40		1.1467891	[1.12-1.17]	Illumina [13747813] (imputed)	N
614	chr6_qbl_hap6	3840644	3840645	rs1391371	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (glucocorticoids)	17,352 European ancestry cases, 188,348 European ancestry controls, 13,102 East Asian ancestry cases, 165,624 East Asian ancestry controls	NA	6p21.32		rs1391371-T	NR	1E-37		0.1229	[0.1-0.14] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
614	chr6_qbl_hap6	3840644	3840645	rs1391371	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (glucocorticoids)	17,352 European ancestry cases, 188,348 European ancestry controls	NA	6p21.32	HLA-DQA1	rs1391371-T	0.202145	2E-48		0.20412196	[0.18-0.23] unit increase	Affymetrix [7288503] (imputed)	N
614	chr6_qbl_hap6	3840644	3840645	rs1391371	30643255	Kristjansson RP	2019-01-14	Nat Genet	A loss-of-function variant in ALOX15 protects against nasal polyps and chronic rhinosinusitis.	Nasal polyps	86 European ancestry whole-genome sequenced cases, 4,280 European ancestry cases, 13,941 European ancestry whole-genome sequenced controls, 700,740 European ancestry controls	NA	6p21.32	HLA-DQA1	rs1391371-T	0.195	7E-49		1.47	[1.39-1.54]	Affymetrix, Illumina [up to 37123566] (imputed)	N
614	chr6_qbl_hap6	3840644	3840645	rs1391371	30643255	Kristjansson RP	2019-01-14	Nat Genet	A loss-of-function variant in ALOX15 protects against nasal polyps and chronic rhinosinusitis.	Chronic rhinosinusitis	251 European ancestry whole-genome sequenced cases, 5,357 European ancestry cases, 13,957 European ancestry whole-genome sequenced controls, 746,129 European ancestry controls	NA	6p21.32	HLA-DQA1	rs1391371-T	0.195	4E-15		1.22	(1.16-1.28)	Affymetrix, Illumina [up to 37123566] (imputed)	N
614	chr6_qbl_hap6	3840671	3840672	rs3129774	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	6p21.32		rs3129774-C	0.559887	9E-21		0.0390299	[0.031-0.047] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3840671	3840672	rs3129774	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs3129774-C	0.55995	2E-20		0.0386367	[0.03-0.047] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3840671	3840672	rs3129774	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6p21.32		rs3129774-C	0.55995	2E-20		0.0377974	[0.03-0.046] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3840671	3840672	rs3129774	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6p21.32		rs3129774-C	0.55995	7E-20		0.0378012	[0.03-0.046] unit increase	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3840671	3840672	rs3129774	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	6p21.32		rs3129774-C	0.559887	2E-21		0.0397338	[0.032-0.048] unit increase	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3840671	3840672	rs3129774	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6p21.32		rs3129774-C	0.55995	1E-18		0.0363057	[0.028-0.044] unit increase	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3840671	3840672	rs3129774	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	6p21.32		rs3129774-C	0.559887	1E-16		0.0342504	[0.026-0.042] unit increase	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3840671	3840672	rs3129774	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs3129774-C	0.55995	8E-20		0.0387931	[0.03-0.047] unit increase	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3840671	3840672	rs3129774	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6p21.32		rs3129774-C	0.55995	1E-19		0.0366269	[0.029-0.045] unit increase	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3840671	3840672	rs3129774	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	6p21.32		rs3129774-C	0.559954	9E-20		0.0375502	[0.029-0.046] unit increase	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3840671	3840672	rs3129774	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	6p21.32		rs3129774-C	0.559887	6E-19		0.0366323	[0.029-0.045] unit increase	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3840671	3840672	rs3129774	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs3129774-C	0.55995	8E-21		0.0392074	[0.031-0.047] unit increase	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3840671	3840672	rs3129774	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6p21.32		rs3129774-C	0.55995	6E-20		0.0370631	[0.029-0.045] unit increase	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3840671	3840672	rs3129774	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	6p21.32		rs3129774-C	0.559954	3E-17		0.0356128	[0.027-0.044] unit increase	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3840781	3840782	rs9272309	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	6p21.32	NR	rs9272309-A	0.620099	1E-19		0.0128993	[0.01-0.016] unit increase	Affymetrix [16578495] (imputed)	N
614	chr6_qbl_hap6	3841217	3841218	rs9272346	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	6p21.32	HLA-DQA1	rs9272346-A	0.61	2E-156				NR [> 9500000] (imputed)	N
614	chr6_qbl_hap6	3841217	3841218	rs9272346	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (childhood onset)	9,433 British ancestry cases, 318,237 British ancestry controls	NA	6p21.32	NR	rs9272346-A	0.59	4E-37		1.13		Affymetrix [10894596] (imputed)	N
614	chr6_qbl_hap6	3841217	3841218	rs9272346	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (age of onset)	37,846 British ancestry individuals	NA	6p21.32	NR	rs9272346-A	0.59	7E-8				Affymetrix [10894596] (imputed)	N
614	chr6_qbl_hap6	3841217	3841218	rs9272346	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (adult onset)	21,564 British ancestry cases, 318,237 British ancestry controls	NA	6p21.32	NR	rs9272346-A	0.59	2E-47		1.13		Affymetrix [10894596] (imputed)	N
614	chr6_qbl_hap6	3841217	3841218	rs9272346	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls, 2,149 African ancestry cases, 6,055 African ancestry controls, 1,239 Japanese ancestry cases, 3,976 Japanese ancestry controls, 606 Latino cases, 792 Latino controls	NA	6p21.32	HLA-DRB1, HLA-DQA1	rs9272346-A	0.56	6E-24		1.16	[1.12-1.19]	Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
614	chr6_qbl_hap6	3841217	3841218	rs9272346	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls	NA	6p21.32	HLA-DRB1, HLA-DQA1	rs9272346-A	0.56	2E-28		0.15	[0.13-0.17] unit increase	Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
614	chr6_qbl_hap6	3841217	3841218	rs9272346	27130862	Sarnowski C	2016-04-06	J Allergy Clin Immunol	Identification of a new locus at 16q12 associated with time to asthma onset.	Asthma (time to onset)	5,462 European ancestry cases, 8,424 European ancestry controls	NA	6p21.32	HLA-DQA1	rs9272346-A	0.59	2E-8		1.13	[1.08-1.17]	Illumina [2387926] (imputed)	N
614	chr6_qbl_hap6	3841217	3841218	rs9272346	23181788	Lasky-Su J	2012-12-04	Clin Exp Allergy	HLA-DQ strikes again: genome-wide association study further confirms HLA-DQ in the diagnosis of asthma among adults.	Asthma	Up to 1,238 European ancestry cases, up to 2,617 European ancestry controls	Up to 1,837 European ancestry cases, up to 3,803 European ancestry controls, up to 2,806 cases, up to 2,150 controls, up to 603 Costa Rican ancestry cases and their parents	6p21.32	HLA-DQA1	rs9272346-?	NR	2E-8	(Adult)			Affymetrix [455089]	N
614	chr6_qbl_hap6	3841217	3841218	rs9272346	18978792	Cooper JD	2008-11-02	Nat Genet	Meta-analysis of genome-wide association study data identifies additional type 1 diabetes risk loci.	Type 1 diabetes	3,561 European ancestry cases, 4,646 European ancestry controls	6,225 European ancestry cases, 6,946 European ancestry controls, 3,064 European ancestry trios from 2,828 families	6p21.32	HLA	rs9272346-G	NR	6E-129				Affymetrix [up to 335565]	N
614	chr6_qbl_hap6	3841217	3841218	rs9272346	17554300	Wellcome Trust Case Control Consortium	2007-06-07	Nature	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Type 1 diabetes	1,963 European ancestry cases, 2,938 European ancestry controls	(see Todd 2007)	6p21.32	MHC	rs9272346-G	0.61	5E-134		5.49	[4.83-6.24]	Affymetrix [469557]	N
614	chr6_qbl_hap6	3841499	3841500	rs9272371	32737300	Sallah N	2020-07-31	Nat Commun	Distinct genetic architectures and environmental factors associate with host response to the ?2-herpesvirus infections.	Anti-Epstein-Barr virus nuclear antigen (EBNA) IgG levels	4,365 Ugandan ancestry individuals	2,162  European ancestry individuals	6p21.32	HLA-DQA1	rs9272371-C	0.3	4E-44	(Ugandan)	0.36	[0.32-0.40] unit decrease	Illumina [14929118] (imputed)	N
614	chr6_qbl_hap6	3841499	3841500	rs9272371	29868224	Sallah N	2017-11-27	Glob Health Epidemiol Genom	Whole-genome association study of antibody response to Epstein-Barr virus in an African population: a pilot.	Epstein-Barr virus immune response (multivariate analysis)	1,473 Ugandan ancestry individuals	NA	6p21.32	HLA-DQA1	rs9272371-C	0.305	6E-21		0.36	[0.27-0.44] unit decrease	Illumina [~ 17000000] (imputed)	N
614	chr6_qbl_hap6	3841499	3841500	rs9272371	29868224	Sallah N	2017-11-27	Glob Health Epidemiol Genom	Whole-genome association study of antibody response to Epstein-Barr virus in an African population: a pilot.	Epstein Barr virus nuclear antigen 1 IgG seropositivity	1,201 Ugandan ancestry cases, 361 Ugandan ancestry controls	NA	6p21.32	HLA-DQA1	rs9272371-?	0.695	4E-10		1.12	[1.08-1.16]	Illumina [~ 17000000] (imputed)	N
614	chr6_qbl_hap6	3841499	3841500	rs9272371	29868224	Sallah N	2017-11-27	Glob Health Epidemiol Genom	Whole-genome association study of antibody response to Epstein-Barr virus in an African population: a pilot.	Epstein Barr virus nuclear antigen 1 IgG levels	1,473 Ugandan ancestry individuals, 2,162 European ancestry individuals	NA	6p21.32	HLA-DQA1	rs9272371-C	0.305	3E-17	(AA)	0.36	[0.26-0.42] unit decrease	Illumina [up to 17000000] (imputed)	N
614	chr6_qbl_hap6	3842035	3842036	rs9272426	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PILRA	5,368 Icelandic ancestry individuals	NA	6p21.32		rs9272426-G	0.3435	2E-12		0.141419	[0.1-0.18] unit increase	Illumina [7506463] (imputed)	N
614	chr6_qbl_hap6	3842035	3842036	rs9272426	32581359	Saevarsdottir S	2020-06-24	Nature	FLT3 stop mutation increases FLT3 ligand level and risk of autoimmune thyroid disease.	Autoimmune thyroid disease	30,234 European ancestry cases, 724,172 European ancestry controls	NA	6p21.32	HLA-DQA1	rs9272426-G	0.448	1E-196		1.31	[NR]	Affymetrix, Illumina [42900000] (imputed)	N
614	chr6_qbl_hap6	3842035	3842036	rs9272426	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs9272426-?	NR	1E-33				Affymetrix [~ 8270000] (imputed)	N
614	chr6_qbl_hap6	3842053	3842054	rs3187964	32421744	Gzara C	2020-05-18	PLoS Pathog	Family-based genome-wide association study of leprosy in Vietnam.	Leprosy	1,749 Vietnamese ancestry cases	1,181 Vietnamese ancestry cases, 688 Vietnamese ancestry controls	6p21.32	HLA-DQA1	rs3187964-C	0.41	8E-16		1.67	[1.55-1.80]	Illumina [5607170] (imputed)	N
614	chr6_qbl_hap6	3842347	3842348	rs9272451	33549134	Adolphe C	2021-02-06	Genome Med	Genetic and functional interaction network analysis reveals global enrichment of regulatory T cell genes influencing basal cell carcinoma susceptibility.	Basal cell carcinoma	17,416 European ancestry cases, 375,455 European ancestry controls	NA	6p21.32	HLA-DQA1	rs9272451-G	0.386296	4E-21		0.10671105	[0.085-0.129] unit decrease	Affymetrix [7260263] (imputed)	N
614	chr6_qbl_hap6	3842354	3842355	rs2213287	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	6p21.32		rs2213287-?	NR	5E-9		0.00544481	[0.0036-0.0073] unit decrease	NR [NR]	N
614	chr6_qbl_hap6	3842735	3842736	rs2187668	28008999	Ostrowski J	2016-12-23	Sci Rep	Genetic architecture differences between pediatric and adult-onset inflammatory bowel diseases in the Polish population.	Ulcerative colitis	269 Polish ancestry child cases, 259 Polish ancestry adult cases, 582 Polish ancestry controls	121 Polish ancestry child cases, 85 Polish ancestry adult cases, 352 Polish ancestry controls	6p21.32	HLA-DQA1	rs2187668-?		4E-6	(Adults)	2.21266	[1.54-3.12]	Illumina [2612357]	N
614	chr6_qbl_hap6	3842735	3842736	rs2187668	28008999	Ostrowski J	2016-12-23	Sci Rep	Genetic architecture differences between pediatric and adult-onset inflammatory bowel diseases in the Polish population.	Inflammatory bowel disease	622 Polish ancestry child cases, 496 Polish ancestry adult cases, 582 Polish ancestry controls	192 Polish ancestry child cases, 185 Polish ancestry adult cases, 352 Polish ancestry controls	6p21.32	HLA-DQA1	rs2187668-?	NR	2E-7	(Adult)	1.9647566	[1.52-2.56]	Illumina [2612357]	N
614	chr6_qbl_hap6	3842735	3842736	rs2187668	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Diastolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	6p21.32	BAT2, BAT5	rs2187668-T	0.126	4E-11		0.372	[0.26-0.48] mm Hg decrease	Affymetrix, Illumina, Perlegen [128272]	N
614	chr6_qbl_hap6	3842735	3842736	rs2187668	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Diastolic blood pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	6p21.32	HLA-DQB1	rs2187668-T	0.1281	8E-6		0.0258	unit decrease	Illumina [242296]	N
614	chr6_qbl_hap6	3842735	3842736	rs2187668	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p21.32	HLA-DQA1	rs2187668-A	0.359	5E-36		3.4	[2.24-5.17]	Illumina [118177]	N
614	chr6_qbl_hap6	3842735	3842736	rs2187668	26525574	Westerlind H	2015-11-02	Gut	Dense genotyping of immune-related loci identifies HLA variants associated with increased risk of collagenous colitis.	Collagenous colitis	247 European ancestry cases, 3969 European ancestry controls	67 European ancestry cases, 330 European ancestry controls	6p21.32	HLA	rs2187668-?	0.126	2E-11		2.06	[1.67-2.55]	Illumina [110634]	N
614	chr6_qbl_hap6	3842735	3842736	rs2187668	26316170	Demirci FY	2015-08-28	Arthritis Rheumatol	Identification of a New Susceptibility Locus for Systemic Lupus Erythematosus on Chromosome 12 in Individuals of European Ancestry.	Systemic lupus erythematosus	661 European ancestry cases, 487 European ancestry controls	4,467 European ancestry cases, 9,114 European ancestry controls	6p21.32	HLA-DQA1	rs2187668-?	NR	1E-9				Affymetrix [up to 700598]	N
614	chr6_qbl_hap6	3842735	3842736	rs2187668	25827949	Kunz M	2015-05-04	Exp Dermatol	Genome-wide association study identifies new susceptibility loci for cutaneous lupus erythematosus.	Cutaneous lupus erythematosus	151 European ancestry cases, 1,288 European ancestry controls	219 European ancestry cases, 262 European ancestry controls	6p21.32	HLA-DQA1	rs2187668-T	0.107	4E-10		2.93	[2.18-3.95]	Affymetrix [906600]	N
614	chr6_qbl_hap6	3842735	3842736	rs2187668	24768677	de Boer YS	2014-04-23	Gastroenterology	Genome-wide association study identifies variants associated with autoimmune hepatitis type 1.	Autoimmune hepatitis type-1	649 European ancestry cases, 13,436 European ancestry controls	451 European ancestry cases, 4,103 European ancestry controls	6p21.32	HLA-DQA1	rs2187668-?	0.15	2E-78		2.9	[2.60-3.40]	Illumina [254006]	N
614	chr6_qbl_hap6	3842735	3842736	rs2187668	21408207	Chung SA	2011-03-03	PLoS Genet	Differential genetic associations for systemic lupus erythematosus based on anti-dsDNA autoantibody production.	Systemic lupus erythematosus	811 anti-dsDNA positive European ancestry cases, 906 anti-dsDNA negative European ancestry cases, 4,813 European ancestry controls	NA	6p21.32	HLA-DR3	rs2187668-A	0.12	6E-28	(anti-dsDNA +)	2.23	[1.94-2.57]	Illumina [421318] (imputed)	N
614	chr6_qbl_hap6	3842735	3842736	rs2187668	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.32	HLA-DQA1	rs2187668-A	0.1297	8E-93		4.32	[NR]	Illumina [242824]	N
614	chr6_qbl_hap6	3842735	3842736	rs2187668	20694011	Ferreira RC	2010-08-08	Nat Genet	Association of IFIH1 and other autoimmunity risk alleles with selective IgA deficiency.	Immunoglobulin A	430 European ancestry cases, 1,090 European ancestry controls	342 European ancestry cases, 886 European ancestry controls	6p21.32	HLA-DRB1	rs2187668-A	0.13	2E-33		2.53	[2.17-2.95]	Illumina [2057134] (imputed)	N
614	chr6_qbl_hap6	3842735	3842736	rs2187668	20190752	Dubois PC	2010-02-28	Nat Genet	Multiple common variants for celiac disease influencing immune gene expression.	Celiac disease	4,533 European ancestry cases, 10,750 European ancestry controls	4,918 European ancestry cases, 5,684 European ancestry controls	6p21.32	HLA-DQB1, HLA-DQA1	rs2187668-A	0.26	1E-50		6.23	[5.95-6.52]	Illumina [292387]	N
614	chr6_qbl_hap6	3842735	3842736	rs2187668	18204098	Hom G	2008-01-20	N Engl J Med	Association of systemic lupus erythematosus with C8orf13-BLK and ITGAM-ITGAX.	Systemic lupus erythematosus	1,311 European ancestry cases, 3,340 European ancestry controls	793 European ancestry cases, 857 European ancestry controls	6p21.32	HLA-DQA1	rs2187668-A	0.11	3E-21				Illumina [502033]	N
614	chr6_qbl_hap6	3842735	3842736	rs2187668	17558408	van Heel DA	2007-06-10	Nat Genet	A genome-wide association study for celiac disease identifies risk variants in the region harboring IL2 and IL21.	Celiac disease	778 European ancestry cases, 1,422 European ancestry controls	991 European ancestry cases, 1,489 European ancestry controls	6p21.32	HLA-DQA1	rs2187668-A	0.14	1E-19		7.04	[6.08-8.15]	Illumina [310605]	N
614	chr6_qbl_hap6	3843165	3843166	rs9272505	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	334,944 European ancestry, NR ancestry individuals	NA	6p21.32		rs9272505-?	NR	5E-8				Affymetrix [NR] (imputed)	N
614	chr6_qbl_hap6	3843330	3843331	rs9272521	33893285	Guindo-Martinez M	2021-04-23	Nat Commun	The impact of non-additive genetic associations on age-related complex diseases.	Asthma	9,209 European ancestry cases, 47,428 European ancestry controls	NA	6p21.32		rs9272521-A	0.436944	6E-15		1.15		Affymetrix [15607971] (imputed)	N
614	chr6_qbl_hap6	3843427	3843428	rs28680981	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.32		rs28680981-G	0.738	3E-67				Affymetrix [10369434] (imputed)	N
614	chr6_qbl_hap6	3843570	3843571	rs9272532	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.32		rs9272532-C	0.77	2E-33				Affymetrix [10369434] (imputed)	N
614	chr6_qbl_hap6	3843680	3843681	rs9272535	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	6p21.32	HLA-DQA1	rs9272535-A	0.2454	6E-30		0.04727792	[0.039-0.055] unit decrease	Affymetrix [~ 2500000] (imputed)	N
614	chr6_qbl_hap6	3843680	3843681	rs9272535	21131588	Slager SL	2010-12-03	Blood	Genome-wide association study identifies a novel susceptibility locus at 6p21.3 among familial CLL.	Chronic lymphocytic leukemia	407 European ancestry cases, 296 European ancestry controls	252 European ancestry cases, 965 European ancestry controls	6p21.32	HLA-DQA1	rs9272535-A	0.27	9E-8		1.61	[1.35-1.92]	Affymetrix [827777]	N
614	chr6_qbl_hap6	3843799	3843800	rs9272544	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	6p21.32	HLA-DQA1	rs9272544-A	0.4858	8E-11		0.02325084	[0.016-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
614	chr6_qbl_hap6	3843806	3843807	rs9272545	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6p21.32	NR	rs9272545-T	0.6122	1E-8		1.0357327	[1.02-1.05]	Affymetrix [15688218] (imputed)	N
614	chr6_qbl_hap6	3843806	3843807	rs9272545	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	6p21.32	NR	rs9272545-?	NR	7E-288	(conditional)			Affymetrix [15688218] (imputed)	N
614	chr6_qbl_hap6	3843833	3843834	rs28383364	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	6p21.32	BTNL2, C6orf10, HCG23, HLA-DOB, HLA-DQA1, HLA-DQA2, HLA-DQB1, HLA-DQB2, HLA-DRA, HLA-DRB1, HLA-DRB5, HLA-DRB6, TAP2	rs28383364-A	0.802222	3E-17		1.0942891	[1.07-1.12]	Affymetrix [8274727] (imputed)	N
614	chr6_qbl_hap6	3843862	3843863	rs9272546	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	6p21.32		rs9272546-T	0.341931	9E-18		0.0373707	[0.029-0.046] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3843940	3843941	rs28802989	29036319	Qi H	2017-09-26	Hum Mol Genet	Discovery of susceptibility loci associated with tuberculosis in Han Chinese.	Tuberculosis	972 Chinese ancestry cases, 1,316 Gambian ancestry cases, 1,537 Chinese ancestry controls, 1,382 Gambian ancestry controls	NA	6p21.32	NR	rs28802989-?	NR	2E-6				Illumina [7333833] (imputed)	N
614	chr6_qbl_hap6	3844088	3844089	rs9272566	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic glomerulonephritis	566 European ancestry cases, 475,255 European ancestry controls, 210 East Asian ancestry cases, 174,345 East Asian ancestry controls	NA	6p21.32		rs9272566-A	NR	3E-11		0.6694	[0.47-0.87] unit increase	Affymetrix, Illumina [25844108] (imputed)	N
614	chr6_qbl_hap6	3844088	3844089	rs9272566	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.32		rs9272566-G	0.715	3E-45				Affymetrix [10369434] (imputed)	N
614	chr6_qbl_hap6	3844163	3844164	rs28383380	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.32		rs28383380-C	0.652	2E-29				Affymetrix [10369434] (imputed)	N
614	chr6_qbl_hap6	3844278	3844279	rs35248896	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs35248896-T	NR	7E-13		0.0255337	[0.019-0.033] unit increase	Affymetrix [319769] (imputed)	N
614	chr6_qbl_hap6	3844278	3844279	rs35248896	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs35248896-T	NR	2E-12		0.0251292	[0.018-0.032] unit increase	Affymetrix [319769] (imputed)	N
614	chr6_qbl_hap6	3844278	3844279	rs35248896	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs35248896-T	NR	7E-12		0.0246503	[0.018-0.032] unit increase	Affymetrix [321169] (imputed)	N
614	chr6_qbl_hap6	3844877	3844878	rs9272624	34532061	Hodel F	2021-06-11	Virus Evol	Human genomics of the humoral immune response against polyomaviruses.	Human polyomavirus 6 VP1 antibody levels	5,094 European ancestry individuals	NA	6p21.32		rs9272624-?	NR	1E-13				Affymetrix [NR] (imputed)	N
614	chr6_qbl_hap6	3844924	3844925	rs9272626	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	6p21.32		rs9272626-C	NR	7E-51		0.0361	[0.031-0.041] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
614	chr6_qbl_hap6	3845130	3845131	rs117441922	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (immunosuppressants)	3,483 East Asian ancestry cases, 175,243 East Asian ancestry controls	NA	6p21.32		rs117441922-C	0.127734413	9E-73		0.7531444	[0.67-0.83] unit increase	Illumina [13134967] (imputed)	N
614	chr6_qbl_hap6	3845667	3845668	rs4452681	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in LDL	115,082 European ancestry individuals	NA	6p21.32		rs4452681-C	0.85737	8E-16		0.0477326	[0.036-0.059] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3845667	3845668	rs4452681	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	6p21.32		rs4452681-C	0.85737	4E-14		0.0448685	[0.033-0.057] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3845667	3845668	rs4452681	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of IDL particles	115,082 European ancestry individuals	NA	6p21.32		rs4452681-C	0.85737	2E-15		0.0465836	[0.035-0.058] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3845755	3845756	rs4455710	32041948	Sarin KY	2020-02-10	Nat Commun	Genome-wide meta-analysis identifies eight new susceptibility loci for cutaneous squamous cell carcinoma.	Cutaneous squamous cell carcinoma	19,149 European ancestry cases, 680,049 European ancestry controls	NA	6p21.32	HLA-DQA1	rs4455710-T	0.368	6E-21		0.14	[0.1-0.18] unit increase	NR [13607369] (imputed)	N
614	chr6_qbl_hap6	3845755	3845756	rs4455710	26829030	Asgari MM	2016-01-29	J Invest Dermatol	Identification of Susceptibility Loci for Cutaneous Squamous Cell Carcinoma.	Squamous cell carcinoma	6,891 European ancestry cases, 54,566 European ancestry controls	810 European ancestry cases,  5,600 European ancestry controls	6p21.32	HLA-DQA1	rs4455710-T	0.38	2E-18		1.17	[1.13-1.21]	Affymetrix [9610468] (imputed)	N
614	chr6_qbl_hap6	3846001	3846002	rs1129740	33909500	Moll M	2021-04-28	Am J Physiol Lung Cell Mol Physiol	A Systematic Analysis of Protein-altering Exonic Variants in Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease	up to 31,465 European ancestry cases, up to 203,688 European ancestry controls, up to 1,413 African ancestry cases, up to 6,080 African ancestry controls, up to 287 East Asian ancestry cases, up to 7,484 East Asian ancestry controls, up to 61 Hispanic cases, up to 613 Hispanic controls	NA	6p21.32	HLA-DQA1	rs1129740-A	0.59	1E-9		1.07	[1.04 -1.09]	Illumina [at least 109036]	N
614	chr6_qbl_hap6	3846022	3846023	rs1071630	33328473	Ahluwalia TS	2020-12-16	Nat Commun	FUT2-ABO epistasis increases the risk of early childhood asthma and Streptococcus pneumoniae respiratory illnesses.	Childhood asthma with severe exacerbations	2,866 European ancestry cases,  65,415 European ancestry controls	NA	6p21.32	HLA-DQA1	rs1071630-C	NR	8E-14		1.25	[1.18-1.32]	Illumina [up to 525976] (imputed)	N
614	chr6_qbl_hap6	3846088	3846089	rs1142323	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p21.32	HLA-DQA1	rs1142323-G		8E-51		0.036	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
614	chr6_qbl_hap6	3846126	3846127	rs9272699	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	6p21.32		rs9272699-?	NR	2E-8		0.00587135	[0.0038-0.0079] unit increase	NR [NR]	N
614	chr6_qbl_hap6	3846262	3846263	rs28383454	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	6p21.32	HLA-DQA1	rs28383454-T	0.537194	1E-143		1.1737434	[1.15939079874647-1.18827364549105]	NR [9572556] (imputed)	N
614	chr6_qbl_hap6	3846262	3846263	rs28383454	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	6p21.32	HLA-DQA1	rs28383454-T	NR	2E-116		1.177	[1.16-1.19]	Affymetrix [9000000] (imputed)	N
614	chr6_qbl_hap6	3846705	3846706	rs707951	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:0_[M+H]1+/Phosphatidylethanolamine_35:0_[M+H]1+/Phosphatidate_37:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	6p21.32		rs707951-T	NR	4E-10		0.0768107	[0.053-0.101] unit decrease	Affymetrix [87696910] (imputed)	N
614	chr6_qbl_hap6	3847156	3847157	rs9272775	33143745	Andlauer TFM	2020-11-04	BMC Med	Treatment- and population-specific genetic risk factors for anti-drug antibodies against interferon-beta: a GWAS.	Neutralising antibody response to interferon beta therapy in multiple sclerosis (antibody titre; IFN?-1b subcutaneous)	up to 2,000 German and Swedish ancestry individuals	up to 757 German and Swedish ancestry individuals	6p21.32		rs9272775-C	0.23	3E-24		0.41	[0.33-0.49] unit increase	Illumina [8550834] (imputed)	N
614	chr6_qbl_hap6	3847156	3847157	rs9272775	33143745	Andlauer TFM	2020-11-04	BMC Med	Treatment- and population-specific genetic risk factors for anti-drug antibodies against interferon-beta: a GWAS.	Binding antibody response to interferon beta therapy in multiple sclerosis (antibody levels; IFN?-1b subcutaneous)	up to 2,000 German and Swedish ancestry individuals	up to 757 German and Swedish ancestry individuals	6p21.32		rs9272775-C	NR	2E-19		0.40715143	[0.32-0.5] unit increase	Illumina [8550834] (imputed)	N
614	chr6_qbl_hap6	3847248	3847249	rs9272780	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs9272780-A	NR	7E-11		0.0186986	[0.013-0.024] unit decrease	Affymetrix [321016] (imputed)	N
614	chr6_qbl_hap6	3847248	3847249	rs9272780	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DQA1	rs9272780-A	NR	3E-14		0.0237876	[0.018-0.03] unit decrease	Affymetrix [323123] (imputed)	N
614	chr6_qbl_hap6	3847248	3847249	rs9272780	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p21.32	HLA-DQA1	rs9272780-A	0.400343	1E-21		0.02813841	[0.022-0.034] unit increase	Affymetrix [93095623] (imputed)	N
614	chr6_qbl_hap6	3847335	3847336	rs1048372	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	HLA-DQA1	rs1048372-C	0.609	5E-12	(Amelogenin, X isoform, AMELX.8578.45.3)	0.18	[0.12-0.24] unit increase	Affymetrix [10572788] (imputed)	N
614	chr6_qbl_hap6	3847336	3847337	rs35087390	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	C-X-C motif chemokine 16 levels	21,758 European ancestry individuals	9,173 individuals	6p21.32		rs35087390-A	0.027	4E-18		0.2561	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
614	chr6_qbl_hap6	3847344	3847345	rs1048381	33204752	Butler-Laporte G	2020-09-24	Open Forum Infect Dis	Genetic Determinants of Antibody-Mediated Immune Responses to Infectious Diseases Agents: A Genome-Wide and HLA Association Study.	Varicella zoster virus glycoproteins E and I antibody levels	7,595 White British ancestry individuals	NA	6p21.32	HLA-DQA1	rs1048381-G		6E-25		0.22	[0.18-0.26] unit decrease	NR [25472218] (imputed)	N
614	chr6_qbl_hap6	3847360	3847361	rs9260	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DQA1	rs9260-A	NR	8E-14		0.0290366	[0.021-0.037] unit increase	Affymetrix [323123] (imputed)	N
614	chr6_qbl_hap6	3847990	3847991	rs28538060	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.32		rs28538060-G	0.858	1E-17				Affymetrix [10369434] (imputed)	N
614	chr6_qbl_hap6	3848209	3848210	rs9272975	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs9272975-A	0.217	1E-55	(HLA class II histocompatibility antigen, DQ alpha 2 chain, HLA.DQA2.7757.5.3)	0.52	[0.46-0.58] unit decrease	Affymetrix [10572788] (imputed)	N
614	chr6_qbl_hap6	3848306	3848307	rs9272989	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	6p21.32		rs9272989-C	0.30783	5E-6		0.033104	[0.019-0.047] unit increase	Affymetrix [15580782] (imputed)	N
614	chr6_qbl_hap6	3848532	3848533	rs9273012	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs9273012-?	NR	3E-16				Affymetrix [~ 8270000] (imputed)	N
614	chr6_qbl_hap6	3848586	3848587	rs4526236	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hepatic cancer	2,122 East Asian ancestry cases, 159,201 East Asian ancestry controls	NA	6p21.32		rs4526236-A	0.174389152	5E-9		0.24874051	[0.17-0.33] unit decrease	Illumina [13427386] (imputed)	N
614	chr6_qbl_hap6	3848859	3848860	rs9273039	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	6p21.32	HLA-DQA1	rs9273039-T	0.2667	1E-25		0.04249746	[0.035-0.05] unit decrease	Affymetrix [~ 2500000] (imputed)	N
614	chr6_qbl_hap6	3849069	3849070	rs9273062	29534301	Nishida N	2018-03-13	Hepatology	Key HLA-DRB1-DQB1 haplotypes and role of the BTNL2 gene for response to a hepatitis B vaccine.	Response to hepatitis B vaccine	107 Japanese ancestry low responder individuals, 351 Japanese ancestry intermediate responder individuals, 735 Japanese ancestry high responder individuals	NA	6p21.32	HLA-DQB1	rs9273062-?		2E-10		0.165	unit increase	Affymetrix [427664]	N
614	chr6_qbl_hap6	3849209	3849210	rs9273076	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	NA	6p21.32	HLA-DQ1	rs9273076-T		8E-13	(conditional)	1.3	[NR]	Illumina [> 644674] (imputed)	N
614	chr6_qbl_hap6	3849305	3849306	rs6927022	33204752	Butler-Laporte G	2020-09-24	Open Forum Infect Dis	Genetic Determinants of Antibody-Mediated Immune Responses to Infectious Diseases Agents: A Genome-Wide and HLA Association Study.	Epstein-Barr virus EBNA-1 antibody levels	7,972 White British ancestry individuals	NA	6p21.32	HLA-DQA1	rs6927022-A	0.505	2E-76		0.3	[0.27-0.33] unit increase	NR [25472218] (imputed)	N
614	chr6_qbl_hap6	3849305	3849306	rs6927022	32737300	Sallah N	2020-07-31	Nat Commun	Distinct genetic architectures and environmental factors associate with host response to the ?2-herpesvirus infections.	Anti-Epstein-Barr virus nuclear antigen (EBNA) IgG levels	4,365 Ugandan ancestry individuals	2,162  European ancestry individuals	6p21.32	HLA-DRB1	rs6927022-A	0.73	1E-21	(Ugandan)	0.26	[0.22-0.30] unit increase	Illumina [14929118] (imputed)	N
614	chr6_qbl_hap6	3849305	3849306	rs6927022	32737300	Sallah N	2020-07-31	Nat Commun	Distinct genetic architectures and environmental factors associate with host response to the ?2-herpesvirus infections.	Anti-Epstein-Barr virus nuclear antigen (EBNA) IgG levels	4,365 Ugandan ancestry individuals	2,162  European ancestry individuals	6p21.32	HLA-DRB1	rs6927022-A	0.59	7E-26	(EA)	0.16	[0.16-0.16] unit increase	Illumina [14929118] (imputed)	N
614	chr6_qbl_hap6	3849305	3849306	rs6927022	29868224	Sallah N	2017-11-27	Glob Health Epidemiol Genom	Whole-genome association study of antibody response to Epstein-Barr virus in an African population: a pilot.	Epstein Barr virus nuclear antigen 1 IgG levels	1,473 Ugandan ancestry individuals, 2,162 European ancestry individuals	NA	6p21.32	HLA-DRB1	rs6927022-A	0.59	7E-26	(EA)	0.16	[0.13-0.19] unit increase	Illumina [up to 17000000] (imputed)	N
614	chr6_qbl_hap6	3849305	3849306	rs6927022	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Ulcerative colitis	12,366 European and unknown ancestry cases, 33,609 European and unknown ancestry controls	NA	6p21.32	C6orf15, CDSN, PSORS1C2, HCG27, HLA-C, HLA-B, MCCD1, ATP6V1G2, LTA, TNF, LTB, NCR3, AIF1, BAG6, C6orf47, GPANK1, LY6G5B, LY6G5C, LY6G6F, MEGT1, LY6G6E, LY6G6D, DDAH2, SAPCD1, HSPA1L, HSPA1B, C6orf48, NEU1, ZBTB12, NELFE, DXO, AL645922.1, CYP21A2, FKBPL, PRRT1, EGFL8, RNF5, AGER, PBX2, HLA-DRA, HLA-DQB1, HLA-DQA2, HLA-DQB2, PSORS1C1, CCHCR1, TCF19, POU5F1, MICA, MICB, DDX39B, ATP6V1G2-DDX39B, NFKBIL1, LST1, PRRC2A, APOM, CSNK2B, CSNK2B-LY6G5B-1181, ABHD16A, XXbac-BPG32J3.20, C6orf25, LY6G6C, CLIC1, VWA7, VARS, LSM2, HSPA1A, SLC44A4, C2, CFB, SKIV2L, STK19, C4A, C4B, TNXB, ATF6B, PPT2, PPT2-EGFL8, AGPAT1, GPSM3, NOTCH4, C6orf10, HLA-DRB5, HLA-DRB1, HLA-DQA1, MSH5, MSH5-SAPCD1, EHMT2, BTNL2	rs6927022-?		5E-65				Illumina [9578670] (imputed)	N
614	chr6_qbl_hap6	3849305	3849306	rs6927022	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	6p21.32	C6orf15, CDSN, PSORS1C2, HCG27, HLA-C, HLA-B, MCCD1, ATP6V1G2, LTA, TNF, LTB, NCR3, AIF1, BAG6, C6orf47, GPANK1, LY6G5B, LY6G5C, LY6G6F, MEGT1, LY6G6E, LY6G6D, DDAH2, SAPCD1, HSPA1L, HSPA1B, C6orf48, NEU1, ZBTB12, NELFE, DXO, AL645922.1, CYP21A2, FKBPL, PRRT1, EGFL8, RNF5, AGER, PBX2, HLA-DRA, HLA-DQB1, HLA-DQA2, HLA-DQB2, PSORS1C1, CCHCR1, TCF19, POU5F1, MICA, MICB, DDX39B, ATP6V1G2-DDX39B, NFKBIL1, LST1, PRRC2A, APOM, CSNK2B, CSNK2B-LY6G5B-1181, ABHD16A, XXbac-BPG32J3.20, C6orf25, LY6G6C, CLIC1, VWA7, VARS, LSM2, HSPA1A, SLC44A4, C2, CFB, SKIV2L, STK19, C4A, C4B, TNXB, ATF6B, PPT2, PPT2-EGFL8, AGPAT1, GPSM3, NOTCH4, C6orf10, HLA-DRB5, HLA-DRB1, HLA-DQA1, MSH5, MSH5-SAPCD1, EHMT2, BTNL2	rs6927022-?		2E-31				Illumina [9725440] (imputed)	N
614	chr6_qbl_hap6	3849305	3849306	rs6927022	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Ulcerative colitis	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls	6p21.32	HLA-DQB1, HLA-DRA, HLA-DRB1, HLA-DQA1	rs6927022-A	0.535	5E-133		1.444	[1.387-1.503]	Affymetrix, Illumina [1230000] (imputed)	N
614	chr6_qbl_hap6	3849338	3849339	rs6926894	31959851	Olafsdottir TA	2020-01-20	Nat Commun	Eighty-eight variants highlight the role of T cell regulation and airway remodeling in asthma pathogenesis.	Asthma	16,247 European ancestry cases, 346,486 European ancestry controls, 52,942 cases, 355,713 controls	NA	6p21.32	HLA-DQA1, HLA-DQB1, HLA-DRB1, HLA-DRB6, HLA-DQA2, MIR3135B	rs6926894-C	0.59076	2E-126		1.16642	[1.15-1.18]	Affymetrix [32463443] (imputed)	N
614	chr6_qbl_hap6	3849338	3849339	rs6926894	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	6p21.32	HLA-DQA1, HLA-DQB1	rs6926894-T	0.4094	2E-100				Affymetrix [15688218] (imputed)	N
614	chr6_qbl_hap6	3849368	3849369	rs200930495	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs200930495-A	0.148	5E-31	(Complement C4, C4A.C4B.4481.34.2)	0.45	[0.37-0.53] unit increase	Affymetrix [10572788] (imputed)	N
614	chr6_qbl_hap6	3849561	3849562	rs9273113	32141793	Garman L	2020-03-06	Ocul Immunol Inflamm	Genome-Wide Association Study of Ocular Sarcoidosis Confirms HLA Associations and Implicates Barrier Function and Autoimmunity in African Americans.	Ocular sarcoidosis	260 African American cases, 1,551 African American controls	NA	6p21.32	NR	rs9273113-A	NR	6E-6		1.57	[1.29-1.91]	Illumina [13976150] (imputed)	N
614	chr6_qbl_hap6	3849639	3849640	rs9273123	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	6p21.32	HLA-DQA1	rs9273123-A	NR	4E-105		1.187	[1.17-1.2]	Affymetrix [9000000] (imputed)	N
614	chr6_qbl_hap6	3850207	3850208	rs9273177	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.32	HLA-DQA1, HLA-DQB1	rs9273177-?		1E-13		1.1363636	[1.1-1.16]	Affymetrix, Illumina [NR]	N
614	chr6_qbl_hap6	3850325	3850326	rs9273190	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs9273190-A	0.364	1E-54	(conditional)	1.79	[1.72-1.86]	Illumina [11270530] (imputed)	N
614	chr6_qbl_hap6	3857110	3857111	rs3998178	33574239	Eriksson D	2021-02-11	Nat Commun	GWAS for autoimmune Addison's disease identifies multiple risk loci and highlights AIRE in disease susceptibility.	Addison's disease	1,223 European ancestry cases, 4,097 European ancestry controls	NA	6p21.32	HLA-DQB1	rs3998178-T	0.19	4E-179		5.98	[5.29-6.76]	Illumina [7068382] (imputed)	N
614	chr6_qbl_hap6	3857602	3857603	rs9273349	20860503	Moffatt MF	2010-09-23	N Engl J Med	A large-scale, consortium-based genomewide association study of asthma.	Asthma	10,365 cases, 16,110 controls	NA	6p21.32	HLA-DQ	rs9273349-C	0.58	7E-14		1.18	[1.13-1.24]	Illumina [582892]	N
614	chr6_qbl_hap6	3857700	3857701	rs2858856	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	HLA-DQB1	rs2858856-A	NR	4E-9		0.0185689	[0.012-0.025] unit increase	Affymetrix [321114] (imputed)	N
614	chr6_qbl_hap6	3857748	3857749	rs6905282	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (multivariate analysis)	477,968 European ancestry individuals	NA	6p21.32	HLA, DQA1, DQB1	rs6905282-A	0.466	5E-28		0.05	[0.04-0.06] unit decrease	NR [NR] (imputed)	N
614	chr6_qbl_hap6	3857748	3857749	rs6905282	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (age of onset)	117,130 European ancestry individuals	NA	6p21.32	HLA-DQA1, HLA-DQB1	rs6905282-A	0.466	1E-23		0.042	[0.034-0.05] unit decrease	NR [7647814] (imputed)	N
614	chr6_qbl_hap6	3857773	3857774	rs4713570	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Malignant lymphoma	3,546 European ancestry cases, 487,257 European ancestry controls, 335 East Asian ancestry cases, 177,342 East Asian ancestry controls	NA	6p21.32		rs4713570-T	NR	1E-16		0.2256	[0.17-0.28] unit increase	Affymetrix, Illumina [25845276] (imputed)	N
614	chr6_qbl_hap6	3857863	3857864	rs7744020	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic rhinitis	18,915 European ancestry cases, 239,773 European ancestry controls	NA	6p21.32	HLA-DQB1	rs7744020-A	0.3071	4E-25		1.131	[1.106-1.157]	Affymetrix [15688218] (imputed)	N
614	chr6_qbl_hap6	3857863	3857864	rs7744020	24204295	Han F	2013-10-31	PLoS Genet	Genome wide analysis of narcolepsy in China implicates novel immune loci and reveals changes in association prior to versus after the 2009 H1N1 influenza pandemic.	Narcolepsy (age of onset)	at least 1,000 Chinese ancestry cases	NA	6p21.32	NR	rs7744020-A	0.272	8E-9		1.9	year decrease	Affymetrix [603382]	N
614	chr6_qbl_hap6	3857938	3857939	rs6905837	32390946	Liu L	2020-04-22	Front Endocrinol (Lausanne)	Twelve New Genomic Loci Associated With Bone Mineral Density.	Total body bone mineral density (MTAG)	66,628 individuals	NA	6p21.32	NR	rs6905837-C	0.95	3E-6		0.05	[0.03-0.07] unit decrease	Affymetrix, Illumina [7369691] (imputed)	N
614	chr6_qbl_hap6	3857938	3857939	rs6905837	32390946	Liu L	2020-04-22	Front Endocrinol (Lausanne)	Twelve New Genomic Loci Associated With Bone Mineral Density.	Heel bone mineral density (MTAG)	426,824 individuals	NA	6p21.32	NR	rs6905837-C	0.95	3E-8		0.03	[0.018-0.042] unit decrease	NR [7369691] (imputed)	N
614	chr6_qbl_hap6	3857982	3857983	rs6928482	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals, at least 88,461 European ancestry individuals	NA	6p21.32	HLA-DQB1	rs6928482-T	0.542	1E-6	(EA)	0.018571429	[0.011-0.026] unit increase	Illumina [1986983] (imputed)	N
614	chr6_qbl_hap6	3858005	3858006	rs9273363	30659077	Onengut-Gumuscu S	2019-01-18	Diabetes Care	Type 1 Diabetes Risk in African-Ancestry Participants and Utility of an Ancestry-Specific Genetic Risk Score.	Type 1 diabetes	1,021 African American cases, 2,928 African American controls	NA	6p21.32	MHC	rs9273363-A	0.13	5E-138		5.48	[4.80-6.27]	Illumina [114874]	N
614	chr6_qbl_hap6	3858005	3858006	rs9273363	23770605	Berndt SI	2013-06-16	Nat Genet	Genome-wide association study identifies multiple risk loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	2,179 European ancestry cases, 6,221 European ancestry controls	1,709 European ancestry cases, 6,318 European ancestry controls	6p21.32	HLA	rs9273363-A	0.27	2E-10		1.24	[NR]	Illumina [549934]	N
614	chr6_qbl_hap6	3858035	3858036	rs9273364	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Carpal tunnel syndrome	18,855 European ancestry cases, 461,346 European ancestry controls, 192 East Asian ancestry cases, 178,534 East Asian ancestry controls	NA	6p21.32		rs9273364-G	NR	1E-8		0.0702	[0.046-0.094] unit increase	Affymetrix, Illumina [25844227] (imputed)	N
614	chr6_qbl_hap6	3858035	3858036	rs9273364	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 29,0641 European ancestry controls	NA	6p21.32	HLA-DQB1	rs9273364-G	0.302909	3E-75		0.23193699	[0.21-0.26] unit increase	Affymetrix [7288503] (imputed)	N
614	chr6_qbl_hap6	3858044	3858045	rs6906021	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Angiopoietin-1 receptor levels	21,758 European ancestry individuals	9,173 individuals	6p21.32		rs6906021-T	0.56	8E-14		0.0626	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
614	chr6_qbl_hap6	3858044	3858045	rs6906021	23817571	Bonnelykke K	2013-06-30	Nat Genet	Meta-analysis of genome-wide association studies identifies ten loci influencing allergic sensitization.	Allergic sensitization	5,789 European ancestry cases, 10,056 European ancestry controls	6,114 European ancestry cases, 9,920 European ancestry controls	6p21.32	HLA-DQB1, HLA-DQA1	rs6906021-C	0.45	2E-12		1.15	[1.11-1.2]	Affymetrix, Illumina [~ 2500000] (imputed)	N
614	chr6_qbl_hap6	3858044	3858045	rs6906021	23817569	Hinds DA	2013-06-30	Nat Genet	A genome-wide association meta-analysis of self-reported allergy identifies shared and allergy-specific susceptibility loci.	Self-reported allergy	53,862 European ancestry individuals	NA	6p21.32	HLA-DQB1, HLA-DQA1	rs6906021-C	0.4749	7E-15		0.0945	[0.071-0.118] unit increase	Illumina [2400000] (imputed)	N
614	chr6_qbl_hap6	3858081	3858082	rs28407950	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6p21.32	NR	rs28407950-C	0.7564	7E-45		1.1032656	[1.09-1.12]	Affymetrix [15688218] (imputed)	N
614	chr6_qbl_hap6	3858081	3858082	rs28407950	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic disease (asthma, hay fever or eczema)	106,772 European ancestry cases, 239,773 European ancestry controls	83,335 cases, 34,934 controls	6p21.32	NR	rs28407950-C	0.7564	7E-70		1.1201972	[1.11-1.13]	Affymetrix [15688218] (imputed)	N
614	chr6_qbl_hap6	3858081	3858082	rs28407950	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (childhood onset)	9,433 British ancestry cases, 318,237 British ancestry controls	NA	6p21.32	HLA-DQA1, HLA-DQB	rs28407950-C	0.756	1E-59		1.354	[1.306-1.405]	Affymetrix [10894596] (imputed)	N
614	chr6_qbl_hap6	3858081	3858082	rs28407950	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (adult onset)	21,564 British ancestry cases, 318,237 British ancestry controls	NA	6p21.32	HLA-DQA1, HLA-DQB	rs28407950-C	0.756	8E-31		1.148	[1.121-1.175]	Affymetrix [10894596] (imputed)	N
614	chr6_qbl_hap6	3858081	3858082	rs28407950	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (antihistamines for systemic use)	13,984 European ancestry cases, 137,652 European ancestry controls	NA	6p21.32	HLA-DQB1	rs28407950-T	0.243266	1E-10		0.094664484	[0.066-0.123] unit decrease	Affymetrix [7288503] (imputed)	N
614	chr6_qbl_hap6	3858136	3858137	rs34004019	30013184	Waage J	2018-07-16	Nat Genet	Genome-wide association and HLA fine-mapping studies identify risk loci and genetic pathways underlying allergic rhinitis.	Allergic rhinitis	59,762 European and unknown ancestry cases, 152,358 European and unknown ancestry controls	60,720 European ancestry cases, 618,527 European ancestry controls	6p21.32	HLA-DQB1, HLA-DQA1	rs34004019-A	0.7331	1E-30		1.1235955	[1.11-1.15]	Affymetrix, Illumina, Perlegen [16531985] (imputed)	N
614	chr6_qbl_hap6	3858136	3858137	rs34004019	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	6p21.32	HLA-DQA1, HLA-DQB1	rs34004019-A	0.7	4E-52		1.101	[1.09-1.11]	Affymetrix, Illumina [8307659] (imputed)	N
614	chr6_qbl_hap6	3858136	3858137	rs34004019	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Allergy	66,973 European ancestry cases, 113,768 European ancestry controls	NA	6p21.32	HLA-DQB1, HLA-DQA1	rs34004019-?	NR	3E-24		1.1086475	[1.09-1.13]	Illumina [12845910] (imputed)	N
614	chr6_qbl_hap6	3858171	3858172	rs9273367	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 1 diabetes	6,447 European ancestry cases, 451,248 European ancestry controls, 1,219 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	6p21.32		rs9273367-T	NR	6E-306		0.7272	[0.69-0.77] unit increase	Affymetrix, Illumina [25837106] (imputed)	N
614	chr6_qbl_hap6	3858184	3858185	rs28414666	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	6p21.32		rs28414666-A	0.134651377	2E-27		0.1486309	[0.12-0.18] unit increase	Illumina [13429980] (imputed)	N
614	chr6_qbl_hap6	3858208	3858209	rs9273368	34737425	Mansour Aly D	2021-11-04	Nat Genet	Genome-wide association analyses highlight etiological differences underlying newly defined subtypes of diabetes.	Severe autoimmune type 2 diabetes	452 Scandinavian ancestry cases, 2,744 Scandinavian ancestry controls	NA	6p21.32	HLA-DQA1, HLA-DQB1	rs9273368-A	0.350323	7E-40		2.678	[2.314 - 3.1]	Illumina [5396854] (imputed)	N
614	chr6_qbl_hap6	3858208	3858209	rs9273368	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	6p21.32		rs9273368-A	NR	2E-49		0.1157	[0.1-0.13] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
614	chr6_qbl_hap6	3858208	3858209	rs9273368	30254083	Cousminer DL	2018-09-25	Diabetes Care	First Genome-Wide Association Study of Latent Autoimmune Diabetes in Adults Reveals Novel Insights Linking Immune and Metabolic Diabetes.	Latent autoimmune diabetes vs. type 2 diabetes	2,779 European ancestry latent autoimmune diabetes cases, 10,396 European ancestry type 2 diabetes cases	NA	6p21.32	HLA-DQB1	rs9273368-?	0.301	3E-78		2.439	[2.222-2.676]	Affymetrix, Illumina [8328843] (imputed)	N
614	chr6_qbl_hap6	3858208	3858209	rs9273368	30254083	Cousminer DL	2018-09-25	Diabetes Care	First Genome-Wide Association Study of Latent Autoimmune Diabetes in Adults Reveals Novel Insights Linking Immune and Metabolic Diabetes.	Latent autoimmune diabetes vs. type 1 diabetes	2,454 European ancestry latent autoimmune diabetes cases, 968 European ancestry type 1 diabetes cases	NA	6p21.32	HLA-DQB1	rs9273368-G	0.35	8E-40		2.99	[2.60-3.91]	Affymetrix, Illumina [8465706] (imputed)	N
614	chr6_qbl_hap6	3858225	3858226	rs9273370	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Hypothyroidism	17,558 European ancestry cases, 117,083 European ancestry controls	NA	6p21.32	HLA-DQA1, HLA-DQB1	rs9273370-?	NR	5E-34		1.1737089	[1.14-1.20]	Illumina [13676411] (imputed)	N
614	chr6_qbl_hap6	3858307	3858308	rs28539606	33731350	Nandakumar P	2021-03-17	Sci Adv	Nuclear genome-wide associations with mitochondrial heteroplasmy.	Mitochondrial heteroplasmy measurement	982,072 European ancestry individuals	NA	6p21.32	HLA-DQB1	rs28539606-G	0.147	4E-23		0.02	[0.016-0.024] unit increase	NR [57525634] (imputed)	N
614	chr6_qbl_hap6	3858332	3858333	rs9273373	24388013	Ferreira MA	2013-12-30	J Allergy Clin Immunol	Genome-wide association analysis identifies 11 risk variants associated with the asthma with hay fever phenotype.	Asthma and hay fever	6,685 European ancestry cases, 14,091 European ancestry controls	878 European ancestry cases, 2,455 European ancestry controls	6p21.32	HLA-DQB1	rs9273373-G	0.54	4E-14		1.24	[1.17-1.30]	Illumina [up to 4972397] (imputed)	N
614	chr6_qbl_hap6	3858345	3858346	rs9273374	29785011	Zhu Z	2018-05-21	Nat Genet	A genome-wide cross-trait analysis from UK Biobank highlights the shared genetic architecture of asthma and allergic diseases.	Asthma or allergic disease (pleiotropy)	14,085 European asthma cases, 25,685 European ancestry allergic diseases cases, 76,768 European ancestry controls	NA	6p21.32	HLA-DOB, HLA-DQA1, HLA-DQA2, HLA-DQB1, HLA-DQB2, HLA-DRB1, HLA-DRB6, TAP2	rs9273374-?	NR	8E-35		1.1904762		NR [74888535] (imputed)	N
614	chr6_qbl_hap6	3858470	3858471	rs12055445	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQB1	rs12055445-A	NR	2E-8		0.0159074	[0.01-0.021] unit increase	Affymetrix [321016] (imputed)	N
614	chr6_qbl_hap6	3858470	3858471	rs12055445	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DQB1	rs12055445-G	NR	1E-12		0.0218742	[0.016-0.028] unit decrease	Affymetrix [323123] (imputed)	N
614	chr6_qbl_hap6	3858470	3858471	rs12055445	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	6p21.32	NR	rs12055445-A	0.500659	5E-18		0.0175207	[0.014-0.021] unit decrease	NR [NR]	N
614	chr6_qbl_hap6	3858470	3858471	rs12055445	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling worry	372,869 European ancestry individuals	NA	6p21.32	HLA-DRA	rs12055445-A	0.498063	3E-12		6.996	unit decrease	NR [10847151] (imputed)	N
614	chr6_qbl_hap6	3858470	3858471	rs12055445	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	6p21.32	HLA-DQA1, HLA-DQB1	rs12055445-G	0.513	6E-11		0.0247074	[0.017-0.032] unit decrease	Illumina [13519193] (imputed)	N
614	chr6_qbl_hap6	3858517	3858518	rs9273375	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DQB1	rs9273375-G	NR	9E-11		0.0262281	[0.018-0.034] unit increase	Affymetrix [323123] (imputed)	N
614	chr6_qbl_hap6	3858608	3858609	rs9273379	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Alanine aminotransferase levels in excessive alcohol consumption	951 individuals	NA	6p21.32	NR	rs9273379-?	NR	2E-6		0.0267	[0.016-0.038] unit decrease	Illumina [~ 7800000] (imputed)	N
614	chr6_qbl_hap6	3858679	3858680	rs4713572	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs4713572-C	0.411	2E-15	(Rac GTPase-activating protein 1, RACGAP1.13587.10.3)	0.21	[0.15-0.27] unit increase	Affymetrix [10572788] (imputed)	N
614	chr6_qbl_hap6	3858704	3858705	rs9273386	34103634	Valette K	2021-06-08	Commun Biol	Prioritization of candidate causal genes for asthma in susceptibility loci derived from UK Biobank.	Asthma	56,167 White-British ancestry cases, 352,255 White-British ancestry controls	NA	6p21.32	HLA-DQA1, HLA-DQB1	rs9273386-C	0.588625259859572	2E-48		0.13383532	[0.12-0.15] unit increase	Affymetrix [35186738] (imputed)	N
614	chr6_qbl_hap6	3858711	3858712	rs4713573	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Juvenile rheumatoid arthritis	216 European ancestry cases, 409,001 European ancestry controls, 110 East Asian ancestry cases, 173,268 East Asian ancestry controls	NA	6p21.32		rs4713573-C	NR	3E-9		0.5903	[0.39-0.79] unit increase	Affymetrix, Illumina [25833140] (imputed)	N
614	chr6_qbl_hap6	3858816	3858817	rs28724231	30552173	Aterido A	2018-12-14	Ann Rheum Dis	Genetic variation at the glycosaminoglycan metabolism pathway contributes to the risk of psoriatic arthritis but not psoriasis.	Psoriatic arthritis	744 Spanish ancestry cases, 1,454 Spanish ancestry controls	1,430 cases, 1,417 controls	6p21.32	NR	rs28724231-?	NR	4E-11		6.62	[NR] z-score decrease	Illumina [1387382] (imputed)	N
614	chr6_qbl_hap6	3858852	3858853	rs9273401	27189021	Cook JP	2016-05-18	Eur J Hum Genet	Multi-ethnic genome-wide association study identifies novel locus for type 2 diabetes susceptibility.	Type 2 diabetes	746 African American cases, 2,825 African American controls, 743 East Asian ancestry cases, 3,992 East Asian ancestry controls, 7,111 European ancestry cases, 49,688 European ancestry controls, 1,147 Latino cases, 5,352 Latino controls	12,171 European ancestry cases, 56,862 European ancestry controls	6p21.32	MHC	rs9273401-G	0.112	2E-9		1.16	[1.11-1.22]	NR [at least 8497425] (imputed)	N
614	chr6_qbl_hap6	3858883	3858884	rs9273404	31816047	Boutin TS	2019-12-09	Hum Mol Genet	Insights into the genetic basis of retinal detachment.	Cataracts (operation)	21,679 British ancestry cases, 387,283 British ancestry controls	NA	6p21.32	HLA-DQB1	rs9273404-?	0.469	3E-8		1.0600239	[1.04-1.08]	Affymetrix [NR] (imputed)	N
614	chr6_qbl_hap6	3858883	3858884	rs9273404	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	6p21.32	HLA-DQB1	rs9273404-G	0.47	2E-11	(conditional on rs2070600)	1.08	[NR]	Affymetrix, Illumina [6224355] (imputed)	N
614	chr6_qbl_hap6	3858973	3858974	rs9273410	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p21.32	NR	rs9273410-A	0.44	7E-16		1.15	[1.11-1.19]	Affymetrix [9886854] (imputed)	N
614	chr6_qbl_hap6	3858973	3858974	rs9273410	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p21.32	NR	rs9273410-A	0.44	3E-22			[NR]	Affymetrix [9886854] (imputed)	N
614	chr6_qbl_hap6	3858973	3858974	rs9273410	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p21.32	NR	rs9273410-A	0.44	2E-21		1.13	[1.1-1.16]	Affymetrix [9886854] (imputed)	N
614	chr6_qbl_hap6	3858973	3858974	rs9273410	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p21.32	NR	rs9273410-A	0.44	7E-22			[NR]	Affymetrix [9886854] (imputed)	N
614	chr6_qbl_hap6	3858973	3858974	rs9273410	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in non-current smokers	16,488 European ancestry cases, 169,688 European ancestry controls	NA	6p21.32	NR	rs9273410-A	0.44	3E-21		1.13	[1.1-1.16]	Affymetrix [9886854] (imputed)	N
614	chr6_qbl_hap6	3858973	3858974	rs9273410	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in never smokers	8,631 European ancestry cases, 120,544 European ancestry controls	NA	6p21.32	NR	rs9273410-A	0.44	9E-16		1.15	[1.11-1.19]	Affymetrix [9886854] (imputed)	N
614	chr6_qbl_hap6	3858973	3858974	rs9273410	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in ever smokers	12,446 European ancestry cases, 59,145 European ancestry controls	NA	6p21.32	NR	rs9273410-A	0.44	3E-9		1.1	[1.06-1.13]	Affymetrix [9886854] (imputed)	N
614	chr6_qbl_hap6	3858973	3858974	rs9273410	30552067	Shrine N	2018-12-11	Lancet Respir Med	Moderate-to-severe asthma in individuals of European ancestry: a genome-wide association study.	Asthma (moderate or severe)	5,135 European ancestry cases, 25,675 European ancestry controls	5,414 European ancestry cases, 21,471 European ancestry controls	6p21.32	HLA-DQB1	rs9273410-A	0.5529999999999999	6E-32		1.21	[1.17-1.25]	Affymetrix [33771858] (imputed)	N
614	chr6_qbl_hap6	3859179	3859180	rs9273429	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQB1	rs9273429-G	NR	6E-9		0.0188118	[0.012-0.025] unit decrease	Affymetrix [319769] (imputed)	N
614	chr6_qbl_hap6	3859203	3859204	rs1064173	32534018	Liu X	2020-06-10	Brain Behav Immun	Genetic factors underlying the bidirectional relationship between autoimmune and mental disorders - findings from a Danish population-based study.	Autoimmune traits	1,383 Danish ancestry cases, 62,656 Danish ancestry controls	NA	6p21.32	NR	rs1064173-A	0.25	3E-36		1.8	[1.64-1.96]	NR [7721839] (imputed)	N
614	chr6_qbl_hap6	3859423	3859424	rs6689	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	6p21.32		rs6689-G	NR	1E-44		0.0349	[0.03-0.04] unit increase	Affymetrix, Illumina [20536134] (imputed)	N
614	chr6_qbl_hap6	3859423	3859424	rs6689	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	135,808 East Asian ancestry individuals	NA	6p21.32		rs6689-G	0.191232	2E-10		0.0291023	[0.02-0.038] unit increase	Illumina [13476599] (imputed)	N
614	chr6_qbl_hap6	3859423	3859424	rs6689	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	6p21.32	NR	rs6689-?	NR	7E-11				Affymetrix [~ 8270000] (imputed)	N
614	chr6_qbl_hap6	3859423	3859424	rs6689	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs6689-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
614	chr6_qbl_hap6	3859437	3859438	rs1063355	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	6p21.32	HLA-DQB1	rs1063355-T	0.397563657636028	4E-19		0.0709	[0.055-0.086] unit decrease	NR [5035015] (imputed)	N
614	chr6_qbl_hap6	3859437	3859438	rs1063355	24837172	Juyal G	2014-05-16	Gut	Genome-wide association scan in north Indians reveals three novel HLA-independent risk loci for ulcerative colitis.	Ulcerative colitis	603 North Indian ancestry cases, 622 North Indian ancestry controls	733 North Indian ancestry cases, 1,148 North Indian ancestry controls	6p21.32	HLA-DQB1, HLA-DRA, HLA-DQA1	rs1063355-A	NR	2E-6		1.43	[1.23-1.66]	Illumina [480391]	N
614	chr6_qbl_hap6	3859518	3859519	rs1766	33204752	Butler-Laporte G	2020-09-24	Open Forum Infect Dis	Genetic Determinants of Antibody-Mediated Immune Responses to Infectious Diseases Agents: A Genome-Wide and HLA Association Study.	Anti-varicella zoster virus IgG seropositivity	8,735 White British ancestry individuals	NA	6p21.32	HLA-DQB1	rs1766-A	0.53	1E-11		0.04	unit decrease	NR [25472218] (imputed)	N
614	chr6_qbl_hap6	3859556	3859557	rs1770	34212547	An J	2021-07-01	Allergy Asthma Immunol Res	Genome-Wide Association Study of Korean Asthmatics: A Comparison With UK Asthmatics.	Adult asthma	1,386 Korean ancestry cases, 5,205 Korean ancestry controls	NA	6p21.32		rs1770-G	0.17	5E-10		1.41	[1.27-1.58]	Affymetrix [4922160] (imputed)	N
614	chr6_qbl_hap6	3859556	3859557	rs1770	31152121	Zhu M	2019-05-31	Diabetes Care	Identification of Novel T1D Risk Loci and Their Association With Age and Islet Function at Diagnosis in Autoantibody-Positive T1D Individuals: Based on a Two-Stage Genome-Wide Association Study.	Type 1 diabetes	1,005 Han Chinese ancestry cases, 1,257 Han Chinese ancestry controls	1,378 Han Chinese ancestry cases, 3,774 Han Chinese ancestry controls	6p21.32	HLA-DQB1	rs1770-G	0.46	2E-232		4.28	[3.92-4.68]	Illumina [787224] (imputed)	N
614	chr6_qbl_hap6	3859647	3859648	rs1063348	29903748	Debiec H	2018-06-14	J Am Soc Nephrol	Transethnic, Genome-Wide Analysis Reveals Immune-Related Risk Alleles and Phenotypic Correlates in Pediatric Steroid-Sensitive Nephrotic Syndrome.	Childhood steroid-sensitive nephrotic syndrome	56 African cases, 454 African controls	NA	6p21.32	HLA-DQB1	rs1063348-?	0.48	3E-7		3.24	[1.93-5.45]	Illumina [at least 7529344] (imputed)	N
614	chr6_qbl_hap6	3859647	3859648	rs1063348	29903748	Debiec H	2018-06-14	J Am Soc Nephrol	Transethnic, Genome-Wide Analysis Reveals Immune-Related Risk Alleles and Phenotypic Correlates in Pediatric Steroid-Sensitive Nephrotic Syndrome.	Childhood steroid-sensitive nephrotic syndrome	244 European ancestry cases, 2,552 European ancestry controls, 56 African cases, 454 African controls, 85 Maghrebian cases, 261 Maghrebian controls	NA	6p21.32	HLA-DQB1	rs1063348-G	0.60	9E-23		3.33	[2.62-4.23]	Illumina [at least 7529344] (imputed)	N
614	chr6_qbl_hap6	3859647	3859648	rs1063348	29903748	Debiec H	2018-06-14	J Am Soc Nephrol	Transethnic, Genome-Wide Analysis Reveals Immune-Related Risk Alleles and Phenotypic Correlates in Pediatric Steroid-Sensitive Nephrotic Syndrome.	Childhood steroid-sensitive nephrotic syndrome	132 European ancestry cases, 2,000 European ancestry controls	NA	6p21.32	HLA-DQB1	rs1063348-?	0.61	1E-8		2.96	[2.04-4.29]	Illumina [at least 7529344] (imputed)	N
614	chr6_qbl_hap6	3859662	3859663	rs36205178	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Scarlet fever	6,812 European ancestry cases, 113,837 European ancestry controls	NA	6p21.32	HLA-DQB1	rs36205178-C	0.81	9E-14		1.24	[1.21-1.28]	Illumina [at least 560000] (imputed)	N
614	chr6_qbl_hap6	3859808	3859809	rs2854277	29899525	Klimentidis YC	2018-06-13	Int J Obes (Lond)	Genome-wide association study of habitual physical activity in over 377,000 UK Biobank participants identifies multiple variants including CADM2 and APOE.	Moderate to vigorous physical activity levels	377,234 European ancestry individuals	NA	6p21.32	HLA-DQB1	rs2854277-C	0.92	3E-10		0.032	unit increase	Affymetrix [11800000] (imputed)	N
614	chr6_qbl_hap6	3859863	3859864	rs9273484	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Agathobacter sp000434275 abundance in stool	5,959 Finnish ancestry individuals	NA	6p21.32		rs9273484-A	0.26703	4E-9		0.114715	[0.077-0.153] unit decrease	Illumina [7980478] (imputed)	N
614	chr6_qbl_hap6	3859873	3859874	rs9273487	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.32		rs9273487-A	0.824	4E-20				Affymetrix [10369434] (imputed)	N
614	chr6_qbl_hap6	3860067	3860068	rs9273500	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DQB1, HLA-DQB1-AS1, XXbac-BPG254F23.6	rs9273500-T	NR	2E-9		0.0229852	[0.015-0.031] unit increase	Affymetrix [323123] (imputed)	N
614	chr6_qbl_hap6	3860086	3860087	rs9273501	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs9273501-A	NR	9E-16		1.1098778	[1.08-1.14]	Affymetrix [7846216] (imputed)	N
614	chr6_qbl_hap6	3860153	3860154	rs2854275	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma and major depressive disorder	46,802 European ancestry asthma cases, 59,851 European ancestry major depressive disorder cases, 460,635 European ancestry controls	NA	6p21.32	HLA-DOB, HLA-DQA1, HLA-DQA2, HLA-DQB1, HLA-DQB2, TAP2	rs2854275-?	NR	3E-13				Affymetrix [up to 13554551] (imputed)	N
614	chr6_qbl_hap6	3860153	3860154	rs2854275	23326239	Rubicz R	2013-01-10	PLoS Genet	A genome-wide integrative genomic study localizes genetic factors influencing antibodies against Epstein-Barr virus nuclear antigen 1 (EBNA-1).	Epstein-Barr virus immune response (EBNA-1)	1,367 Mexican American indivduals	589 Mexican American indivduals	6p21.32	PSORS1C1, BAT2, EHMT2, HLA-DQB1, C6orf15, BAT4, NOTCH4, PRRT1, HLA-B	rs2854275-T	0.064	2E-10	(Conditional on rs477515 - Quantitative)	0.45	[NR] unit decrease	Illumina [944565]	N
614	chr6_qbl_hap6	3860263	3860265	rs201043192	26423011	Wain LV	2015-09-27	Lancet Respir Med	Novel insights into the genetics of smoking behaviour, lung function, and chronic obstructive pulmonary disease (UK BiLEVE): a genetic association study in UK Biobank.	Lung function (low FEV1 vs high FEV1)	19,493 European ancestry individuals with low FEV1 measurements, 9,808 European ancestry individuals with high FEV1 measurements	NA	6p21.32	HLA-DQB1	rs201043192-A	NR	5E-9		0.114	[0.077-0.151] unit increase	Affymetrix [28509962] (imputed)	N
614	chr6_qbl_hap6	3860386	3860387	rs28688207	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Sarcoidosis	1,718 European ancestry cases, 484,955 European ancestry controls, 220 East Asian ancestry cases, 177,667 East Asian ancestry controls	NA	6p21.32		rs28688207-C	NR	1E-15		0.7435	[0.56-0.93] unit increase	Affymetrix, Illumina [25845061] (imputed)	N
614	chr6_qbl_hap6	3860542	3860543	rs9273542	31263063	Dufek S	2019-07-01	J Am Soc Nephrol	Genetic Identification of Two Novel Loci Associated with Steroid-Sensitive Nephrotic Syndrome.	Childhood steroid-sensitive nephrotic syndrome	422 European ancestry cases, 5,642 European ancestry controls	NA	6p21.32	HLA-DQB1	rs9273542-T	0.24	2E-43		3.39	[2.86-4.03]	Illumina [5216266] (imputed)	N
614	chr6_qbl_hap6	3860637	3860638	rs3828785	27560520	Shaffer JR	2016-08-25	PLoS Genet	Genome-Wide Association Study Reveals Multiple Loci Influencing Normal Human Facial Morphology.	Eye morphology	2,447 European ancestry individuals	671 European ancestry individuals	6p21.32	Intergenic	rs3828785-A	0.03169	2E-7	(Outercanthal width)	1.449	[0.91-1.99] unit decrease	Illumina [34985077] (imputed)	N
614	chr6_qbl_hap6	3860645	3860646	rs28724235	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.32		rs28724235-T	0.934	1E-16				Affymetrix [10369434] (imputed)	N
614	chr6_qbl_hap6	3860646	3860647	rs9273552	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs9273552-A	0.07	2E-31	(Ubiquitin carboxyl-terminal hydrolase 25, USP25.9215.117.3)	0.62	[0.52-0.72] unit increase	Affymetrix [10572788] (imputed)	N
614	chr6_qbl_hap6	3860813	3860814	rs28724238	32488134	Auckland K	2020-06-02	Sci Rep	The Human Leukocyte Antigen Locus and Rheumatic Heart Disease Susceptibility in South Asians and Europeans.	Rheumatic heart disease	510 Northern Indian cases, 344 Northern Indian controls, 162 Fijian Indian cases, 147 Fijian Indian controls	150 European ancestry cases, 1,309 European ancestry controls	6p21.32	HLA-DQB1	rs28724238-?		2E-7		1.75	[1.42-2.15]	Illumina [6925553] (imputed)	N
614	chr6_qbl_hap6	3861079	3861080	rs28724242	32589924	Bi W	2020-06-23	Am J Hum Genet	A Fast and Accurate Method for Genome-Wide Time-to-Event Data Analysis and Its Application to UK Biobank.	Essential hypertension (time to event)	76,566 British ancestry cases, 206,305 British ancestry controls	NA	6p21.32	HLA-DQB142	rs28724242-?	NR	4E-8				NR [~ 24000000] (imputed)	N
614	chr6_qbl_hap6	3861613	3861614	rs1049130	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQB1, XXbac-BPG254F23.6	rs1049130-A	NR	1E-11		0.0190514	[0.014-0.025] unit increase	Affymetrix [321016] (imputed)	N
614	chr6_qbl_hap6	3861643	3861644	rs1049087	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hypothyroidism	1,114 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	6p21.32		rs1049087-A	0.609286629	4E-8		0.24121252	[0.16-0.33] unit increase	Illumina [13429045] (imputed)	N
614	chr6_qbl_hap6	3861643	3861644	rs1049087	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Lymphocytic leukemia	852 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs1049087-A	NR	7E-7		1.2743725	NR	Affymetrix [7846216] (imputed)	N
614	chr6_qbl_hap6	3861913	3861914	rs9274096	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.32		rs9274096-A	0.604	1E-14				Affymetrix [10369434] (imputed)	N
614	chr6_qbl_hap6	3864058	3864059	rs9274299	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.32	HLA-DQA1, HLA-DQA2, HLA-DQB1, HLA-DQB2, MIR3135B	rs9274299-?		4E-13		1.1111112	[1.08-1.14]	Affymetrix, Illumina [NR]	N
614	chr6_qbl_hap6	3864315	3864316	rs71542462	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	6p21.32		rs71542462-G	0.738074	2E-9		0.0306313	[0.021-0.041] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3864467	3864468	rs9274346	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	6p21.32	HLA-DQB1	rs9274346-C	0.607966	3E-14		0.0152666	[0.011-0.019] unit decrease	Affymetrix [NR] (imputed)	N
614	chr6_qbl_hap6	3864486	3864487	rs67842782	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p21.32		rs67842782-C	0.852	5E-9				Affymetrix [10369434] (imputed)	N
614	chr6_qbl_hap6	3864548	3864549	rs41263822	33893285	Guindo-Martinez M	2021-04-23	Nat Commun	The impact of non-additive genetic associations on age-related complex diseases.	Cancer	17,131 European ancestry cases, 39,506 European ancestry controls	NA	6p21.32		rs41263822-A	0.420574	2E-10		1.1		Affymetrix [15611556] (imputed)	N
614	chr6_qbl_hap6	3864584	3864585	rs9274361	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DQB1	rs9274361-A	NR	7E-10		0.020516	[0.014-0.027] unit decrease	Affymetrix [321169] (imputed)	N
614	chr6_qbl_hap6	3864681	3864682	rs1130397	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	6p21.32		rs1130397-A	0.81619	7E-22		0.0518638	[0.041-0.062] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3864681	3864682	rs1130397	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.32		rs1130397-A	0.816	8E-23				Affymetrix [10369434] (imputed)	N
614	chr6_qbl_hap6	3864692	3864693	rs17412833	26838040	Kristjansson RP	2016-02-03	Nat Commun	Common and rare variants associating with serum levels of creatine kinase and lactate dehydrogenase.	Lactate dehydrogenase levels	98,585 Icelandic ancestry individuals	NA	6p21.32		rs17412833-T	0.1376	2E-22		0.07	unit increase	Illumina [28300000] (imputed)	N
614	chr6_qbl_hap6	3864729	3864730	rs9274384	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs9274384-A	0.727	5E-31	(conditional)	1.415	[1.36-1.47]	Illumina [11270530] (imputed)	N
614	chr6_qbl_hap6	3864783	3864784	rs41552812	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	6p21.32	HLA-DQB1	rs41552812-C	0.92962	3E-29		0.0565596	[0.047-0.066] unit increase	Affymetrix [NR] (imputed)	N
614	chr6_qbl_hap6	3864877	3864878	rs1140310	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pollinosis	18,593 East Asian ancestry cases, 153,666 East Asian ancestry controls	NA	6p21.32		rs1140310-C	0.301582347	8E-13		0.09507005	[0.069-0.121] unit decrease	Illumina [13429010] (imputed)	N
614	chr6_qbl_hap6	3864926	3864927	rs9274407	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQB1	rs9274407-A	NR	3E-9		0.0226345	[0.015-0.03] unit decrease	Affymetrix [319769] (imputed)	N
614	chr6_qbl_hap6	3864926	3864927	rs9274407	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DQB1	rs9274407-A	NR	5E-9		0.0222139	[0.015-0.03] unit decrease	Affymetrix [319769] (imputed)	N
614	chr6_qbl_hap6	3864926	3864927	rs9274407	21570397	Lucena MI	2011-04-12	Gastroenterology	Susceptibility to amoxicillin-clavulanate-induced liver injury is influenced by multiple HLA class I and II alleles.	Drug-induced liver injury (amoxicillin-clavulanate)	201 European ancestry cases, 532 European ancestry controls	NA	6p21.32	HLA-DRB1-DQB1	rs9274407-?	NR	5E-14		3.1	[2.30-4.20]	Illumina [822927]	N
614	chr6_qbl_hap6	3864980	3864981	rs201184533	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	6p21.32	HLA-DQB1	rs201184533-C	NR	9E-17		1.263	[1.21-1.32]	Affymetrix [9000000] (imputed)	N
614	chr6_qbl_hap6	3864983	3864984	rs281862010	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6p21.32		rs281862010-C	0.902103	9E-10		0.048298	[0.033-0.064] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3864983	3864984	rs281862010	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs281862010-G	0.103	4E-21	(HLA class II histocompatibility antigen, DQ alpha 2 chain, HLA.DQA2.7757.5.3)	0.44	[0.34-0.54] unit increase	Affymetrix [10572788] (imputed)	N
614	chr6_qbl_hap6	3865088	3865089	rs41263828	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.32	NR	rs41263828-?	NR	1E-10				Affymetrix [~ 8270000] (imputed)	N
614	chr6_qbl_hap6	3865158	3865159	rs28746806	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DQB1	rs28746806-C	NR	1E-14		0.0253727	[0.019-0.032] unit decrease	Affymetrix [323123] (imputed)	N
614	chr6_qbl_hap6	3865324	3865325	rs9274442	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	6p21.32		rs9274442-C	NR	8E-142		0.0773	[0.071-0.083] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
614	chr6_qbl_hap6	3865340	3865341	rs28746814	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	6p21.32	HLA-DQB1	rs28746814-T	0.325337	9E-16		0.022020848	[0.017-0.027] unit increase	Affymetrix [93095623] (imputed)	N
614	chr6_qbl_hap6	3865524	3865525	rs9274461	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.32		rs9274461-T	0.575	1E-14				Affymetrix [10369434] (imputed)	N
614	chr6_qbl_hap6	3865814	3865815	rs9274477	24204295	Han F	2013-10-31	PLoS Genet	Genome wide analysis of narcolepsy in China implicates novel immune loci and reveals changes in association prior to versus after the 2009 H1N1 influenza pandemic.	Narcolepsy (age of onset)	at least 1,000 Chinese ancestry cases	NA	6p21.32	NR	rs9274477-G	0.292	2E-8		1.82	year decrease	Affymetrix [603382]	N
614	chr6_qbl_hap6	3865937	3865938	rs41264352	34011352	Schwarm C	2021-05-19	Orphanet J Rare Dis	Identification of two novel bullous pemphigoid- associated alleles, HLA-DQA1*05:05 and -DRB1*07:01, in Germans.	Bullous pemphigoid	438 German cases, 417 German controls	NA	6p21.32	HLA-DQB1	rs41264352-?	NR	4E-10		0.798564	[0.55-1.05] unit increase	Affymetrix [up to 386296] (imputed)	N
614	chr6_qbl_hap6	3866327	3866328	rs68033958	32141793	Garman L	2020-03-06	Ocul Immunol Inflamm	Genome-Wide Association Study of Ocular Sarcoidosis Confirms HLA Associations and Implicates Barrier Function and Autoimmunity in African Americans.	Ocular sarcoidosis	260 African American cases, 1,551 African American controls	NA	6p21.32	NR	rs68033958-A	NR	1E-6		1.685	[1.36-2.08]	Illumina [13976150] (imputed)	N
614	chr6_qbl_hap6	3866474	3866475	rs9274522	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 62)	3,566 European ancestry individuals	4,680 European ancestry individuals	6p21.32		rs9274522-T	0.322654941	2E-8				Illumina [7417619] (imputed)	N
614	chr6_qbl_hap6	3866488	3866489	rs1049055	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TGM3	5,368 Icelandic ancestry individuals	NA	6p21.32		rs1049055-C	0.3996	4E-56		0.302704	[0.27-0.34] unit increase	Illumina [7506463] (imputed)	N
614	chr6_qbl_hap6	3866488	3866489	rs1049055	32276964	Shete S	2020-04-10	Cancer Res	A genome-wide association study identifies two novel susceptible regions for squamous cell carcinoma of the head and neck.	Oral cavity cancer	631 European ancestry cases, 4,493 European ancestry controls	2,568 European ancestry cases, 3,232 European ancestry controls	6p21.32	HLA-DQB1	rs1049055-T	0.78	3E-9		1.2820514	[1.18-1.39]	Illumina [7858089] (imputed)	N
614	chr6_qbl_hap6	3866565	3866566	rs3891175	28779025	Alberts R	2017-08-04	Gut	Genetic association analysis identifies variants associated with disease progression in primary sclerosing cholangitis.	Autoimmune hepatitis in primary sclerosing cholangitis	107 European ancestry cases, 3,159 European ancestry controls	NA	6p21.32	HLA-DQB1	rs3891175-?	NR	5E-11		2.41		Illumina [130422] (imputed)	N
614	chr6_qbl_hap6	3866773	3866774	rs3891173	33893285	Guindo-Martinez M	2021-04-23	Nat Commun	The impact of non-additive genetic associations on age-related complex diseases.	Type 2 diabetes	6,967 European ancestry cases, 49,670 European ancestry controls	NA	6p21.32		rs3891173-T	0.2870184	5E-8		1.14		Affymetrix [15533686] (imputed)	N
614	chr6_qbl_hap6	3866775	3866776	rs71542467	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	6p21.32		rs71542467-G	0.8462	8E-13		0.0407075	[0.03-0.052] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3866775	3866776	rs71542467	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs71542467-G	0.846206	3E-16		0.0452701	[0.034-0.056] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3866862	3866863	rs41316204	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs41316204-?	NR	2E-12				Affymetrix [~ 8270000] (imputed)	N
614	chr6_qbl_hap6	3867102	3867103	rs4993140	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQB1	rs4993140-C	NR	5E-9		0.0217004	[0.014-0.029] unit increase	Affymetrix [319769] (imputed)	N
614	chr6_qbl_hap6	3867102	3867103	rs4993140	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DQB1	rs4993140-C	NR	6E-9		0.0215826	[0.014-0.029] unit increase	Affymetrix [319769] (imputed)	N
614	chr6_qbl_hap6	3867102	3867103	rs4993140	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DQB1	rs4993140-C	NR	7E-10		0.0231343	[0.016-0.03] unit increase	Affymetrix [321169] (imputed)	N
614	chr6_qbl_hap6	3867696	3867697	rs9274600	26423011	Wain LV	2015-09-27	Lancet Respir Med	Novel insights into the genetics of smoking behaviour, lung function, and chronic obstructive pulmonary disease (UK BiLEVE): a genetic association study in UK Biobank.	Lung function in never smokers (low FEV1 vs high FEV1)	9,745 European ancestry individuals with low FEV1 measurements, 4,902 European ancestry individuals with high FEV1 measurements	NA	6p21.32	HLA-DQB1, HLA-DQA2	rs9274600-G	0.472	1E-10		1.18	[1.13-1.25]	Affymetrix [28509962] (imputed)	N
614	chr6_qbl_hap6	3868007	3868008	rs3828794	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6p21.32	NR	rs3828794-G	0.5206	1E-9		1.0380982	[1.03-1.05]	Affymetrix [15688218] (imputed)	N
614	chr6_qbl_hap6	3868053	3868054	rs2647025	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	6p21.32	NR	rs2647025-?	NR	4E-99	(conditional)			Affymetrix [15688218] (imputed)	N
614	chr6_qbl_hap6	3868102	3868103	rs9274623	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	6p21.32	NR	rs9274623-G	NR	6E-19		1.1363636	[NR]	Illumina [7158791] (imputed)	N
614	chr6_qbl_hap6	3868167	3868168	rs3828800	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DQB1	rs3828800-A	NR	1E-8		0.0236155	[0.016-0.032] unit decrease	Affymetrix [323123] (imputed)	N
614	chr6_qbl_hap6	3868224	3868225	rs3828805	34642315	Ferreiro-Iglesias A	2021-10-12	Nat Commun	Germline determinants of humoral immune response to HPV-16 protect against oropharyngeal cancer.	Oropharynx cancer and human papilloma virus 16 negative oropharyngeal cancer	2,359 European ancestry cases, 565 European ancestry controls	NA	6p21.32		rs3828805-C	NR	3E-9		1.2999		Illumina [up to 7574753] (imputed)	N
614	chr6_qbl_hap6	3868224	3868225	rs3828805	27749845	Lesseur C	2016-10-17	Nat Genet	Genome-wide association analyses identify new susceptibility loci for oral cavity and pharyngeal cancer.	Oropharynx cancer	2,506 European ancestry cases, 135 cases, 5,984 European ancestry controls, 601 controls	NA	6p21.32	HLA-DQB1	rs3828805-C	0.720208999141883	2E-12		1.3699		Illumina [7574753] (imputed)	N
614	chr6_qbl_hap6	3868224	3868225	rs3828805	27749845	Lesseur C	2016-10-17	Nat Genet	Genome-wide association analyses identify new susceptibility loci for oral cavity and pharyngeal cancer.	Oral cavity and pharyngeal cancer	2,717 European ancestry oral cavity cancer cases, 273 oral cavity cancer cases, 2,506 European ancestry oropharynx cancer cases, 135 oropharynx cancer cases, 305 European and unknown ancestry hypopharynx cancer cases, 73 European and unknown ancestry overlapping cases, 25 European and unknown ancestry cases, 5,984 European ancestry controls, 601 controls	NA	6p21.32	HLA-DQB1	rs3828805-C	0.72	3E-13		1.2759		Illumina [7574753] (imputed)	N
614	chr6_qbl_hap6	3868468	3868469	rs9274657	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.32	HLA-DQA1, HLA-DQB1, HLA-DRB1, HLA-DRB6	rs9274657-A		1E-8		1.07	[1.04-1.09]	Affymetrix, Illumina [NR]	N
614	chr6_qbl_hap6	3868480	3868481	rs2856698	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	6p21.32		rs2856698-G	NR	1E-158		0.2523	[0.23-0.27] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
614	chr6_qbl_hap6	3868480	3868481	rs2856698	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	6p21.32	HLA-DQB1	rs2856698-G	0.328285	3E-170		0.2688451	[0.25-0.29] unit increase	Affymetrix [7288503] (imputed)	N
614	chr6_qbl_hap6	3868489	3868490	rs9274659	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (age of onset)	37,846 British ancestry individuals	NA	6p21.32	NR	rs9274659-A	0.67	7E-18		1.249	[0.96-1.53] unit decrease	Affymetrix [10894596] (imputed)	N
614	chr6_qbl_hap6	3868599	3868600	rs9461792	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DQB1	rs9461792-A	NR	2E-14		0.0240826	[0.018-0.03] unit increase	Affymetrix [321169] (imputed)	N
614	chr6_qbl_hap6	3868622	3868623	rs9461793	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	6p21.32	NR	rs9461793-A	0.721618	2E-16		0.0108832	[0.0081-0.0136] unit increase	Affymetrix [16585854] (imputed)	N
614	chr6_qbl_hap6	3868622	3868623	rs9461793	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	6p21.32	NR	rs9461793-A	0.721618	3E-9		0.0092307	[0.0061-0.0124] unit increase	Affymetrix [16585866] (imputed)	N
614	chr6_qbl_hap6	3868744	3868745	rs17205409	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.32		rs17205409-T	0.71	8E-19				Affymetrix [10369434] (imputed)	N
614	chr6_qbl_hap6	3868750	3868751	rs9274678	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	6p21.32	HLA-DQB1	rs9274678-G	0.153747	3E-39		0.0256517	[0.02-0.031] unit increase	Affymetrix [93095623] (imputed)	N
614	chr6_qbl_hap6	3868803	3868804	rs28371206	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQB1	rs28371206-A	NR	4E-13		0.022406	[0.016-0.028] unit increase	Affymetrix [319769] (imputed)	N
614	chr6_qbl_hap6	3868803	3868804	rs28371206	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DQB1	rs28371206-A	NR	3E-13		0.0226484	[0.017-0.029] unit increase	Affymetrix [319769] (imputed)	N
614	chr6_qbl_hap6	3868835	3868836	rs184950714	32581322	Kakuta Y	2020-06-24	Sci Rep	An Integrated Genomic and Transcriptomic Analysis Reveals Candidates of Susceptibility Genes for Crohn's Disease in Japanese Populations.	Crohn's disease	713 Japanese ancestry cases, 2,063 Japanese ancestry controls	NA	6p21.32	HLA	rs184950714-?	NR	1E-17		1.16	[1.12-1.19]	NR [7424691] (imputed)	N
614	chr6_qbl_hap6	3868835	3868836	rs184950714	30500874	Kakuta Y	2018-11-29	J Crohns Colitis	A genome-wide association study identifying RAP1A as a novel susceptibility gene for Crohn's disease in Japanese individuals.	Crohn's disease	713 Japanese ancestry cases, 2,083 Japanese ancestry controls	770 Japanese ancestry cases, 852 Japanese ancestry controls	6p21.32	HLA-DQB1	rs184950714-?	0.156	4E-19		2.05	NR	NR [4335144] (imputed)	N
614	chr6_qbl_hap6	3869104	3869105	rs9274695	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQB1	rs9274695-T	NR	5E-9		0.0173565	[0.012-0.023] unit increase	Affymetrix [319769] (imputed)	N
614	chr6_qbl_hap6	3869104	3869105	rs9274695	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DQB1	rs9274695-T	NR	3E-8		0.0165442	[0.011-0.022] unit increase	Affymetrix [319769] (imputed)	N
614	chr6_qbl_hap6	3869104	3869105	rs9274695	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DQB1	rs9274695-T	NR	1E-11		0.021862	[0.016-0.028] unit decrease	Affymetrix [323123] (imputed)	N
614	chr6_qbl_hap6	3869265	3869266	rs17205528	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p21.32	NR	rs17205528-?	NR	3E-12		0.1232	[0.088-0.158] unit increase	Illumina [at least 560000] (imputed)	N
614	chr6_qbl_hap6	3869320	3869321	rs9274704	31719529	Lyons PA	2019-11-12	Nat Commun	Genome-wide association study of eosinophilic granulomatosis with polyangiitis reveals genomic loci stratified by ANCA status.	Eosinophilic granulomatosis with polyangiitis	534 European ancestry cases, 6,688 European ancestry controls	142 European and unknown ancestry cases, 121 European and unknown ancestry controls	6p21.32	HLA-DQ	rs9274704-?	NR	1E-20		0.7	NR unit increase	Affymetrix [9246221] (imputed)	N
614	chr6_qbl_hap6	3869520	3869521	rs17205640	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	150,708 East Asian ancestry individuals	NA	6p21.32	NR	rs17205640-T	0.456457	2E-22		0.047325	[0.038-0.057] SD units increase	Affymetrix, Illumina [16709798] (imputed)	N
614	chr6_qbl_hap6	3869520	3869521	rs17205640	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	149,861 East Asian ancestry individuals	NA	6p21.32	NR	rs17205640-T	0.456482	8E-17		0.040531	[0.031-0.05] SD units increase	Affymetrix, Illumina [16709126] (imputed)	N
614	chr6_qbl_hap6	3869520	3869521	rs17205640	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	142,940 East Asian ancestry individuals	NA	6p21.32	NR	rs17205640-T	0.455611	1E-14		0.038007	[0.028-0.048] SD units increase	Affymetrix, Illumina [16289021] (imputed)	N
614	chr6_qbl_hap6	3869577	3869578	rs9274719	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	81,042 East Asian ancestry individuals	NA	6p21.32	NR	rs9274719-T	0.330615	3E-10		0.040123	[0.028-0.053] SD units increase	Affymetrix, Illumina [16286709] (imputed)	N
614	chr6_qbl_hap6	3869579	3869580	rs17212014	31719529	Lyons PA	2019-11-12	Nat Commun	Genome-wide association study of eosinophilic granulomatosis with polyangiitis reveals genomic loci stratified by ANCA status.	Eosinophilic granulomatosis with polyangiitis (MPO-ANCA positive)	159 European ancestry cases, 6,688 European ancestry controls	43 European and unknown ancestry cases, 121 European and unknown ancestry controls	6p21.32	HLA-DQ	rs17212014-?	NR	1E-41		2.0	NR unit increase	Affymetrix [9246221] (imputed)	N
614	chr6_qbl_hap6	3869604	3869605	rs3997832	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQB1	rs3997832-C	NR	3E-15		0.022848	[0.017-0.029] unit increase	Affymetrix [319769] (imputed)	N
614	chr6_qbl_hap6	3869604	3869605	rs3997832	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DQB1	rs3997832-C	NR	5E-15		0.0226927	[0.017-0.028] unit increase	Affymetrix [319769] (imputed)	N
614	chr6_qbl_hap6	3869680	3869681	rs9274725	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DQB1	rs9274725-T	NR	8E-18		0.0244981	[0.019-0.03] unit increase	Affymetrix [321169] (imputed)	N
614	chr6_qbl_hap6	3869850	3869851	rs1694129	33768542	Liu Y	2021-03-26	Clin Pharmacol Ther	Class II HLA Variants Associate with Risk of Pegaspargase Hypersensitivity.	Asparaginase hypersensitivity in acute lymphoblastic leukemia	2,168 European ancestry individuals	NA	6p21.32	HLA-DQB1	rs1694129-T	NR	1E-8		2.03	[NR]	Illumina [NR] (imputed)	N
614	chr6_qbl_hap6	3870282	3870283	rs28746882	33143745	Andlauer TFM	2020-11-04	BMC Med	Treatment- and population-specific genetic risk factors for anti-drug antibodies against interferon-beta: a GWAS.	Binding antibody response to interferon beta therapy in multiple sclerosis (antibody levels; all treatment preparations)	up to 2,000 German and Swedish ancestry individuals	up to 757 German and Swedish ancestry individuals	6p21.32		rs28746882-A	0.08	5E-11	(conditional on rs9272071)	0.27678168	[0.19-0.36] unit increase	Illumina [8550834] (imputed)	N
614	chr6_qbl_hap6	3870306	3870307	rs11751495	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in IDL	115,082 European ancestry individuals	NA	6p21.32		rs11751495-C	0.972783	2E-10		0.082651	[0.057-0.108] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3870306	3870307	rs11751495	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	6p21.32	HLA-DQB1	rs11751495-G	0.027062	6E-16		0.05776946	[0.044-0.072] unit decrease	Affymetrix [93095623] (imputed)	N
614	chr6_qbl_hap6	3872241	3872242	rs9274845	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium HDL	115,082 European ancestry individuals	NA	6p21.32		rs9274845-C	0.579977	1E-11		0.0273653	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3872241	3872242	rs9274845	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium HDL	115,082 European ancestry individuals	NA	6p21.32		rs9274845-C	0.579977	6E-13		0.0292315	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3872241	3872242	rs9274845	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in HDL	115,082 European ancestry individuals	NA	6p21.32		rs9274845-C	0.579977	6E-9		0.0228022	[0.015-0.03] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3872241	3872242	rs9274845	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	6p21.32		rs9274845-C	0.579977	1E-8		0.022675	[0.015-0.03] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3872241	3872242	rs9274845	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein A1 levels	115,082 European ancestry individuals	NA	6p21.32		rs9274845-C	0.579977	1E-8		0.0226077	[0.015-0.03] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3872249	3872250	rs9274846	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium HDL particles	115,082 European ancestry individuals	NA	6p21.32		rs9274846-C	0.579991	3E-10		0.0251988	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3872249	3872250	rs9274846	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium HDL	115,082 European ancestry individuals	NA	6p21.32		rs9274846-C	0.579991	9E-9		0.0230622	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3872249	3872250	rs9274846	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	6p21.32		rs9274846-C	0.579991	7E-9		0.023128	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3873255	3873256	rs9274890	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs9274890-A	0.257	2E-12	(Complement C4, C4A.C4B.4481.34.2)	0.22	[0.16-0.28] unit increase	Affymetrix [10572788] (imputed)	N
614	chr6_qbl_hap6	3873328	3873329	rs9274903	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs9274903-A	0.266	4E-14	(Complement C4, C4A.C4B.4481.34.2)	0.22	[0.16-0.28] unit increase	Affymetrix [10572788] (imputed)	N
614	chr6_qbl_hap6	3873985	3873986	rs9274954	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	HLA-DQB1	rs9274954-T	0.366	5E-13	(PAX-interacting protein 1, PAXIP1.12894.3.3)	0.22	[0.16-0.28] unit increase	Affymetrix [10572788] (imputed)	N
614	chr6_qbl_hap6	3874590	3874591	rs1794484	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lung cancer	4,444 East Asian ancestry cases, 174,282 East Asian ancestry controls	NA	6p21.32		rs1794484-C	0.340651021	5E-10		0.1469222	[0.1-0.19] unit increase	Illumina [13429980] (imputed)	N
614	chr6_qbl_hap6	3874866	3874867	rs1694123	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	HLA-DQB1	rs1694123-G	0.157	8E-13	(Zinc fingers and homeoboxes protein 3, ZHX3.10036.201.3)	0.27	[0.19-0.35] unit increase	Affymetrix [10572788] (imputed)	N
614	chr6_qbl_hap6	3876660	3876661	rs3134986	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	6p21.32	NA	rs3134986-T	0.2899	9E-9		0.002	[0.0014-0.0026] unit decrease	Affymetrix [15275733] (imputed)	N
614	chr6_qbl_hap6	3878965	3878966	rs139025277	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs139025277-G	0.096	9E-14	(HLA class II histocompatibility antigen, DQ alpha 2 chain, HLA.DQA2.7757.5.3)	0.35	[0.25-0.45] unit decrease	Affymetrix [10572788] (imputed)	N
614	chr6_qbl_hap6	3879168	3879169	rs28755358	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs28755358-A	0.247	8E-16	(Complement C4, C4A.C4B.4481.34.2)	0.26	[0.2-0.32] unit increase	Affymetrix [10572788] (imputed)	N
614	chr6_qbl_hap6	3879485	3879486	rs56151658	32890573	Yan Q	2020-09-02	J Allergy Clin Immunol	A genome-wide association study of asthma hospitalizations in adults.	Exacerbations requiring hospitalisation in asthma	1,658 British ancestry cases, 32,509 British ancestry controls	NA	6p21.32	NR	rs56151658-A	0.89	3E-8		1.36	[1.22-1.52]	Affymetrix [87696888] (imputed)	N
614	chr6_qbl_hap6	3879575	3879576	rs6931740	31719529	Lyons PA	2019-11-12	Nat Commun	Genome-wide association study of eosinophilic granulomatosis with polyangiitis reveals genomic loci stratified by ANCA status.	Eosinophilic granulomatosis with polyangiitis (ANCA negative)	352 European ancestry cases, 6,688 European ancestry controls	94 European and unknown ancestry cases, 121 European and unknown ancestry controls	6p21.32	HLA	rs6931740-?	NR	3E-9		0.55	NR unit increase	Affymetrix [9246221] (imputed)	N
614	chr6_qbl_hap6	3879807	3879808	rs3129780	27749845	Lesseur C	2016-10-17	Nat Genet	Genome-wide association analyses identify new susceptibility loci for oral cavity and pharyngeal cancer.	Oral cavity cancer	2,717 European ancestry cases, 273 cases, 5,984 European ancestry controls, 601 controls	NA	6p21.32	intergenic	rs3129780-A	0.64	6E-8		1.2373	NR	Illumina [7574753] (imputed)	N
614	chr6_qbl_hap6	3879972	3879973	rs201414107	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lung cancer	3,791 European ancestry cases, 489,012 European ancestry controls, 4,444 East Asian ancestry cases, 174,282 East Asian ancestry controls	NA	6p21.32		rs201414107-A	NR	8E-10		0.1374	[0.093-0.181] unit increase	Affymetrix, Illumina [25845450] (imputed)	N
614	chr6_qbl_hap6	3880262	3880263	rs9275052	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.32	NR	rs9275052-G	NR	1E-10		0.028	unit decrease	Affymetrix [at least 7091467] (imputed)	N
614	chr6_qbl_hap6	3880262	3880263	rs9275052	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.32	NR	rs9275052-G	0.404	5E-9	(EA)	0.027	unit decrease	Affymetrix [at least 7091467] (imputed)	N
614	chr6_qbl_hap6	3880262	3880263	rs9275052	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.32	NR	rs9275052-G	NR	2E-6		0.021	unit decrease	Affymetrix [at least 7091467] (imputed)	N
614	chr6_qbl_hap6	3881054	3881055	rs545072519	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	HLA-DQB1	rs545072519-C	NR	2E-9		0.0333434	[0.022-0.044] unit increase	Affymetrix [321114] (imputed)	N
614	chr6_qbl_hap6	3881770	3881771	rs1694112	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	6p21.32	NR	rs1694112-?	NR	8E-41	(conditional)			Affymetrix [15688218] (imputed)	N
614	chr6_qbl_hap6	3881782	3881783	rs9275109	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	HLA-DQB1	rs9275109-G	NR	2E-9		0.0176049	[0.012-0.023] unit decrease	Affymetrix [321114] (imputed)	N
614	chr6_qbl_hap6	3882718	3882719	rs9275134	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Cancer	56,634 White British ancestry cases, 218,196 White British ancestry controls	NA	6p21.32		rs9275134-?	NR	6E-6		0.964671	[0.95-0.98]	NR [688737]	N
614	chr6_qbl_hap6	3882867	3882868	rs17205731	33143745	Andlauer TFM	2020-11-04	BMC Med	Treatment- and population-specific genetic risk factors for anti-drug antibodies against interferon-beta: a GWAS.	Binding antibody response to interferon beta therapy in multiple sclerosis (antibody levels; IFN?-1b subcutaneous)	up to 2,000 German and Swedish ancestry individuals	up to 757 German and Swedish ancestry individuals	6p21.32		rs17205731-T	0.05	2E-11	(conditional on HLA-DRB1*04:01)	0.62026006	[0.44-0.8] unit increase	Illumina [8550834] (imputed)	N
614	chr6_qbl_hap6	3883185	3883186	rs17212146	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	6p21.32		rs17212146-A	0.01175	2E-14		0.08258159	[0.061-0.104] unit increase	Affymetrix [93095623] (imputed)	N
614	chr6_qbl_hap6	3883185	3883186	rs17212146	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6p21.32		rs17212146-A	0.01175	3E-25		0.11182327	[0.091-0.133] unit increase	Affymetrix [93095623] (imputed)	N
614	chr6_qbl_hap6	3883645	3883646	rs17212223	24204295	Han F	2013-10-31	PLoS Genet	Genome wide analysis of narcolepsy in China implicates novel immune loci and reveals changes in association prior to versus after the 2009 H1N1 influenza pandemic.	Narcolepsy (age of onset)	at least 1,000 Chinese ancestry cases	NA	6p21.32	NR	rs17212223-T	0.191	3E-8		1.95	year decrease	Affymetrix [603382]	N
614	chr6_qbl_hap6	3884301	3884302	rs9275152	31660654	Bandres-Ciga S	2019-10-29	Mov Disord	The Genetic Architecture of Parkinson Disease in Spain: Characterizing Population-Specific Risk, Differential Haplotype Structures, and Providing Etiologic Insight.	Parkinson's disease	4,639 Spanish ancestry cases, 2,949 Spanish ancestry controls	NA	6p21.32	HLA-DQB1	rs9275152-C	0.08263	2E-8		0.376551	[0.25-0.51] unit decrease	Illumina [9911207] (imputed)	N
614	chr6_qbl_hap6	3884383	3884384	rs3104361	33204752	Butler-Laporte G	2020-09-24	Open Forum Infect Dis	Genetic Determinants of Antibody-Mediated Immune Responses to Infectious Diseases Agents: A Genome-Wide and HLA Association Study.	Helicobacter pylori OMP antibody levels	2,640 White British ancestry individuals	NA	6p21.32	HLA-DQB1	rs3104361-T	0.418	7E-10		0.18	[0.12-0.24] unit decrease	NR [25472218] (imputed)	N
614	chr6_qbl_hap6	3884422	3884423	rs7755224	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	6p21.32	NR	rs7755224-?	NR	5E-138	(conditional)			Affymetrix [15688218] (imputed)	N
614	chr6_qbl_hap6	3884464	3884465	rs3021058	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Automobile speeding propensity	404,291 European ancestry individuals	NA	6p21.32	HLA-DQB1	rs3021058-A	0.5386	4E-8		0.012403218	[0.008-0.0168] unit increase	Affymetrix [11514463] (imputed)	N
614	chr6_qbl_hap6	3884574	3884575	rs3021176	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hepatic cancer	379 European ancestry cases, 475,259 European ancestry controls, 2,122 East Asian ancestry cases, 159,201 East Asian ancestry controls	NA	6p21.32		rs3021176-A	NR	2E-9		0.2342	[0.16-0.31] unit increase	Affymetrix, Illumina [25843189] (imputed)	N
614	chr6_qbl_hap6	3884725	3884726	rs9275160	34431594	Atkins JL	2021-08-25	Aging Cell	A genome-wide association study of the frailty index highlights brain pathways in ageing.	Frailty index	175,226 European ancestry individuals	NA	6p21.32	HLA-DQB1, HLA-DQA2	rs9275160-A	0.3397	7E-28		0.0382	[0.031-0.045] unit increase	Affymetrix, Illumina [7666890] (imputed)	N
614	chr6_qbl_hap6	3884725	3884726	rs9275160	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	6p21.32	NR	rs9275160-A	NR	9E-8		1.044	[1.03-1.06]	Affymetrix, Illumina [29235255] (imputed)	N
614	chr6_qbl_hap6	3884890	3884891	rs28746950	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs28746950-A	0.172	4E-13	(Ubiquitin carboxyl-terminal hydrolase 25, USP25.9215.117.3)	0.27	[0.19-0.35] unit increase	Affymetrix [10572788] (imputed)	N
614	chr6_qbl_hap6	3885052	3885053	rs115712830	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28- CD4-CD8- T cell Absolute Count	3,408 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs115712830-C	0.15817	5E-8		0.2914	[0.19-0.4] unit decrease	Illumina [18340221] (imputed)	N
614	chr6_qbl_hap6	3886078	3886079	rs9275171	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	2,495 East Asian ancestry cases, 4,283 East Asian ancestry controls	NA	6p21.32		rs9275171-G	NR	5E-29		0.446594	[0.37-0.52] unit increase	NR [5275424] (imputed)	N
614	chr6_qbl_hap6	3886280	3886281	rs9275177	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	IgA nephropathy	1,180 East Asian ancestry cases, 899 East Asian ancestry controls	NA			rs9275177-T	NR	2E-6		0.362916	[0.21-0.51] unit increase	Illumina [NR] (imputed)	N
614	chr6_qbl_hap6	3886820	3886821	rs9275184	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	6p21.32	NR	rs9275184-C	0.1106	6E-24		0.0981	[0.079-0.117] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
614	chr6_qbl_hap6	3886928	3886929	rs2856687	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	6p21.32	NR	rs2856687-C	0.588689	2E-12		0.0486468	[0.035-0.062] unit decrease	Affymetrix [17914406] (imputed)	N
614	chr6_qbl_hap6	3887083	3887084	rs28747027	32573827	Huang YH	2020-06-23	Aliment Pharmacol Ther	Large-scale genome-wide association study identifies HLA class II variants associated with chronic HBV infection: a study from Taiwan Biobank.	Chronic hepatitis B infection	1,810 East Asian cases, 9,002 East Asian seropositive controls	648 East Asian cases, 3,190 East Asian seropositive controls	6p21.32	NR	rs28747027-G	0.4639	7E-21		1.41	[1.32-1.52]	Affymetrix [583383]	N
614	chr6_qbl_hap6	3887654	3887655	rs13194877	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs13194877-A	0.2	6E-9		4.48	[3.41-5.89]	Illumina [NR] (imputed)	N
614	chr6_qbl_hap6	3887836	3887837	rs3129783	33143745	Andlauer TFM	2020-11-04	BMC Med	Treatment- and population-specific genetic risk factors for anti-drug antibodies against interferon-beta: a GWAS.	Binding antibody response to interferon beta therapy in multiple sclerosis (antibody levels; IFN?-1a subcutaneous and intramuscular)	up to 2,000 German and Swedish ancestry individuals	up to 757 German and Swedish ancestry individuals	6p21.32		rs3129783-G	0.44	4E-19		0.3	[-0.24--0.36] unit decrease	Illumina [8550834] (imputed)	N
614	chr6_qbl_hap6	3888022	3888023	rs189311301	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs189311301-C	0.991	3E-10		2.233	[1.98-2.48]	Illumina [11270530] (imputed)	N
614	chr6_qbl_hap6	3888172	3888172	rs201452941	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.32	HLA-DQB1, HLA-DQA2	rs201452941-?	0.611	7E-12	(women)	0.0399317	[0.029-0.051] unit decrease	Illumina [13520550] (imputed)	N
614	chr6_qbl_hap6	3888174	3888174	rs111626885	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.32	Intergenic	rs111626885-?	NR	7E-12	(women)	0.0399302	[0.029-0.051] unit decrease	Illumina [13520550] (imputed)	N
614	chr6_qbl_hap6	3889542	3889543	rs3129716	26316170	Demirci FY	2015-08-28	Arthritis Rheumatol	Identification of a New Susceptibility Locus for Systemic Lupus Erythematosus on Chromosome 12 in Individuals of European Ancestry.	Systemic lupus erythematosus	661 European ancestry cases, 487 European ancestry controls	4,467 European ancestry cases, 9,114 European ancestry controls	6p21.32	HLA-DQB1	rs3129716-?	NR	4E-9				Affymetrix [up to 700598]	N
614	chr6_qbl_hap6	3889649	3889650	rs4642516	30012571	Jia X	2018-07-16	J Am Soc Nephrol	Strong Association of the HLA-DR/DQ Locus with Childhood Steroid-Sensitive Nephrotic Syndrome in the Japanese Population.	Childhood steroid-sensitive nephrotic syndrome	224 Japanese ancestry cases, 412 Japanese ancestry controls	216 Japanese ancestry cases, 719 Japanese ancestry controls	6p21.32	HLA-DR, HLA-DQ	rs4642516-T	0.73	7E-13		3.030303	[2.44-3.85]	Affymetrix [4105543] (imputed)	N
614	chr6_qbl_hap6	3889684	3889685	rs7774434	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	8,021 European ancestry cases, 16,489 European ancestry controls, 2,495 East Asian ancestry cases, 4,283 East Asian ancestry controls	NA	6p21.32		rs7774434-C	NR	3E-116		0.462101	[0.42-0.5] unit increase	NR [2787054] (imputed)	N
614	chr6_qbl_hap6	3889684	3889685	rs7774434	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	8,021 European ancestry cases, 16,489 European ancestry controls	NA	6p21.32		rs7774434-C	NR	4E-104		0.470454	[0.43-0.51] unit increase	NR [5054572] (imputed)	N
614	chr6_qbl_hap6	3889684	3889685	rs7774434	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	MTCO3P1	rs7774434-C	NR	6E-9		0.0168538	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
614	chr6_qbl_hap6	3889684	3889685	rs7774434	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	MTCO3P1	rs7774434-C	NR	2E-8		0.0162768	[0.011-0.022] unit increase	Affymetrix [319769] (imputed)	N
614	chr6_qbl_hap6	3889684	3889685	rs7774434	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	MTCO3P1	rs7774434-C	NR	2E-10		0.0201596	[0.014-0.026] unit decrease	Affymetrix [323123] (imputed)	N
614	chr6_qbl_hap6	3889684	3889685	rs7774434	26394269	Cordell HJ	2015-09-22	Nat Commun	International genome-wide meta-analysis identifies new primary biliary cirrhosis risk loci and targetable pathogenic pathways.	Primary biliary cholangitis	2,764 European ancestry cases, 10,475 European ancestry controls	3,716 European ancestry cases,  4,261 European ancestry controls	6p21.32	MHC	rs7774434-C	0.47	2E-56		1.68	NR	Illumina [1143634] (imputed)	N
614	chr6_qbl_hap6	3889684	3889685	rs7774434	22961000	Liu JZ	2012-10-01	Nat Genet	Dense fine-mapping study identifies new susceptibility loci for primary biliary cirrhosis.	Primary biliary cirrhosis	2,861 British and Irish ancestry cases, 8,514 British and Irish ancestry controls	NA	6p21.32	HLA	rs7774434-C	0.38	1E-48		1.57		Illumina [237619] (imputed)	N
614	chr6_qbl_hap6	3889684	3889685	rs7774434	21399635	Mells GF	2011-03-13	Nat Genet	Genome-wide association study identifies 12 new susceptibility loci for primary biliary cirrhosis.	Primary biliary cholangitis	1,840 European ancestry cases, 5,163 European ancestry controls and (Liu et al)	620 European ancestry cases, 2,514 European ancestry controls	6p21.32	MHC	rs7774434-C	0.38	4E-34		1.6	[1.48-1.73]	Illumina [507467]	N
614	chr6_qbl_hap6	3889684	3889685	rs7774434	20639880	Liu X	2010-07-18	Nat Genet	Genome-wide meta-analyses identify three loci associated with primary biliary cirrhosis.	Primary biliary cholangitis	453 European ancestry cases, 945 European ancestry controls,	481 European ancestry cases, 3,706 European ancestry controls	6p21.32	HLA-DQB1	rs7774434-C	0.371	3E-26		1.75	[NR]	Illumina [276459]	N
614	chr6_qbl_hap6	3889923	3889924	rs9275210	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	MTCO3P1	rs9275210-T	NR	9E-9		0.0164099	[0.011-0.022] unit increase	Affymetrix [321114] (imputed)	N
614	chr6_qbl_hap6	3890022	3890023	rs7775055	23603761	Hinks A	2013-04-21	Nat Genet	Dense genotyping of immune-related disease regions identifies 14 new susceptibility loci for juvenile idiopathic arthritis.	Juvenile idiopathic arthritis (oligoarticular or rheumatoid factor-negative polyarticular)	2,816 European ancestry cases, 13,056 European ancestry controls	NA	6p21.32	HLA-DQA2, HLA-DQB1	rs7775055-G	0.02	3E-174	(dominant model)	6.01	[5.30-6.81]	Illumina [123003]	N
614	chr6_qbl_hap6	3890022	3890023	rs7775055	22936693	Juran BD	2012-08-29	Hum Mol Genet	Immunochip analyses identify a novel risk locus for primary biliary cirrhosis at 13q14, multiple independent associations at four established risk loci and epistasis between 1p31 and 7q32 risk variants.	Primary biliary cirrhosis	2,216 European ancestry cases, 5,594 Europen ancestry controls	NA	6p21.32	NR	rs7775055-C		1E-33		3.71	[3.00-4.59]	Illumina [109812]	N
614	chr6_qbl_hap6	3890185	3890186	rs7775228	33106546	Johnson TA	2020-10-26	J Hum Genet	Association of an IGHV3-66 gene variant with Kawasaki disease.	Kawasaki disease	1,276 East Asian ancestry cases, 5,086 East Asian ancestry controls	2,152 East Asian ancestry cases, 2,751 East Asian ancestry controls	6p21.32	HLA-DQB1	rs7775228-C	NR	7E-13		1.26	[1.19-1.35]	Affymetrix, Illumina [6265045] (imputed)	N
614	chr6_qbl_hap6	3890185	3890186	rs7775228	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.32	NR	rs7775228-?	NR	3E-6	(EA, C-C motif chemokine 19)			Affymetrix [509946]	N
614	chr6_qbl_hap6	3890185	3890186	rs7775228	25147954	Enroth S	2014-08-22	Nat Commun	Strong effects of genetic and lifestyle factors on biomarker variation and use of personalized cutoffs.	CCL19 levels	up to 653 individuals	up to 317 individuals	6p21.32	HLA-DQB1	rs7775228-C	0.16731	3E-13		0.51	[0.37-0.65] unit increase	Illumina [4840842] (imputed)	N
614	chr6_qbl_hap6	3890185	3890186	rs7775228	22036096	Ramasamy A	2011-11-01	J Allergy Clin Immunol	A genome-wide meta-analysis of genetic variants associated with allergic rhinitis and grass sensitization and their interaction with birth order.	IgE grass sensitization	2,315 European ancestry cases, 10,032 European ancestry controls	NA	6p21.32	HLA region	rs7775228-C	0.13	2E-9		1.33	[1.21-1.45]	Affymetrix, Illumina [2217510] (imputed)	N
614	chr6_qbl_hap6	3890185	3890186	rs7775228	21804548	Hirota T	2011-07-31	Nat Genet	Genome-wide association study identifies three new susceptibility loci for adult asthma in the Japanese population.	Asthma	1,532 Japanese ancestry cases, 3,304 Japanese ancestry controls	5,639 Japanese ancestry cases, 24,608 Japanese ancestry controls	6p21.32	HLA-DQB1	rs7775228-A	0.63	5E-15		1.17	[1.12-1.21]	Illumina [458847]	N
614	chr6_qbl_hap6	3890416	3890417	rs9469220	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	MTCO3P1	rs9469220-A	NR	5E-16		0.0228026	[0.017-0.028] unit increase	Affymetrix [319769] (imputed)	N
614	chr6_qbl_hap6	3890416	3890417	rs9469220	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	MTCO3P1	rs9469220-A	NR	9E-16		0.0226045	[0.017-0.028] unit increase	Affymetrix [319769] (imputed)	N
614	chr6_qbl_hap6	3890416	3890417	rs9469220	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	MTCO3P1	rs9469220-A	NR	5E-18		0.0246439	[0.019-0.03] unit increase	Affymetrix [321169] (imputed)	N
614	chr6_qbl_hap6	3890416	3890417	rs9469220	30230522	Zhang S	2018-09-19	Br J Dermatol	Subtype-Specific Inherited Predisposition to Pemphigus in Chinese Population.	Pemphigus vulgaris	255 Chinese ancestry cases, 501 Chinese ancestry controls	110 Chinese ancestry cases, 604 Chinese ancestry controls	6p21.32	NR	rs9469220-G	0.33	4E-19		3.36	NR	Affymetrix [416397]	N
614	chr6_qbl_hap6	3890416	3890417	rs9469220	30230522	Zhang S	2018-09-19	Br J Dermatol	Subtype-Specific Inherited Predisposition to Pemphigus in Chinese Population.	Pemphigus	350 Chinese ancestry cases, 501 Chinese ancestry controls	146 Chinese ancestry cases, 604 Chinese ancestry controls	6p21.32	NR	rs9469220-G	0.33	7E-22		3.2	NR	Affymetrix [416397]	N
614	chr6_qbl_hap6	3890416	3890417	rs9469220	23146381	Levin AM	2012-11-10	J Allergy Clin Immunol	A meta-analysis of genome-wide association studies for serum total IgE in diverse study populations.	IgE levels	2,469 African American individuals, 259 Latino individuals, 1,564 European ancestry individuals	2,961 African American individuals, 1,477 Latino individuals, 649 European ancestry individuals, 680 Hutterite individuals	6p21.32	HLA-DQB1	rs9469220-G	NR	2E-7		0.09	[0.05-0.12] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
614	chr6_qbl_hap6	3890416	3890417	rs9469220	17554300	Wellcome Trust Case Control Consortium	2007-06-07	Nature	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Crohn's disease	1,748 European ancestry cases, 2,938 European ancestry controls	(see Parkes 2007)	6p21.32	NR	rs9469220-A	0.48	2E-6		1.14	[0.98-1.32]	Affymetrix [469557]	N
614	chr6_qbl_hap6	3890799	3890800	rs34723256	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs34723256-A	0.059	4E-68	(conditional)	2.282	[2.19-2.37]	Illumina [11270530] (imputed)	N
614	chr6_qbl_hap6	3890820	3890821	rs2858330	31985003	Boocock J	2020-01-27	Hum Mol Genet	Genomic dissection of 43 serum urate-associated loci provides multiple insights into molecular mechanisms of urate control.	Urate levels	110,238 European ancestry individuals, 21,471 East Asian individuals	NA	6p21.32	HLA-DQB1	rs2858330-T		4E-8		0.027	[0.017-0.037] mg/dl increase	NR [NR] (imputed)	N
614	chr6_qbl_hap6	3891038	3891039	rs9275218	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	MTCO3P1	rs9275218-G	NR	1E-11		0.0205042	[0.015-0.026] unit increase	Affymetrix [321169] (imputed)	N
614	chr6_qbl_hap6	3891547	3891548	rs140068907	26891255	Jung ES	2016-02-18	Inflamm Bowel Dis	HLA-C*01 is a Risk Factor for Crohn's Disease.	Crohn's disease	275 Korean ancestry cases, 2,369 Korean ancestry controls	242 Korean ancestry cases, 1,066 Korean ancestry controls	6p21.32	HLA-DQB1, HLA-DQA2	rs140068907-C	0.08	1E-11		1.98	[1.62-2.41]	Affymetrix [3387207] (imputed)	N
614	chr6_qbl_hap6	3891620	3891621	rs9275222	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	MTCO3P1	rs9275222-T	NR	7E-11		0.0204278	[0.014-0.027] unit increase	Affymetrix [323858] (imputed)	N
614	chr6_qbl_hap6	3891620	3891621	rs9275222	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	MTCO3P1	rs9275222-T	NR	1E-9		0.0190432	[0.013-0.025] unit increase	Affymetrix [127266] (imputed)	N
614	chr6_qbl_hap6	3891749	3891750	rs2856674	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	MTCO3P1	rs2856674-G	NR	7E-14		0.0297899	[0.022-0.038] unit decrease	Affymetrix [321169] (imputed)	N
614	chr6_qbl_hap6	3891749	3891750	rs2856674	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling nervous	373,121 European ancestry individuals	NA	6p21.32	BRD2	rs2856674-A	0.144331	2E-10		6.41	z score increase	NR [10847151] (imputed)	N
614	chr6_qbl_hap6	3891749	3891750	rs2856674	23603763	Liu JZ	2013-06-01	Nat Genet	Dense genotyping of immune-related disease regions identifies nine new risk loci for primary sclerosing cholangitis.	Primary sclerosing cholangitis	3,789 European ancestry cases, 25,079 European ancestry controls	NA	6p21.32	HLA-DQA	rs2856674-?	NR	1E-6	(conditioned on rs4143332 + HLA-DQA*01:03 + rs532098 +rs1794282 + rs9263964)			Illumina [140322] (imputed)	N
614	chr6_qbl_hap6	3891942	3891943	rs3129718	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Hepatitis B	1,425 European ancestry cases, 218,180 European ancestry controls	NA	6p21.32	NR	rs3129718-?	NR	6E-6		0.3099	[0.17-0.45] unit decrease	Illumina [at least 560000] (imputed)	N
614	chr6_qbl_hap6	3891982	3891983	rs9275224	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	MTCO3P1	rs9275224-G	NR	1E-13		0.0208122	[0.015-0.026] unit increase	Affymetrix [319769] (imputed)	N
614	chr6_qbl_hap6	3891982	3891983	rs9275224	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	MTCO3P1	rs9275224-G	NR	1E-12		0.0199507	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
614	chr6_qbl_hap6	3891982	3891983	rs9275224	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	MTCO3P1	rs9275224-G	NR	5E-16		0.023055	[0.017-0.029] unit increase	Affymetrix [321169] (imputed)	N
614	chr6_qbl_hap6	3891982	3891983	rs9275224	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	6p21.32	HLA-DQB1, HLA-DQA1, HLA-DRB1	rs9275224-G	0.59	8E-14	(East Asian)	1.38		Illumina [> 1000000] (imputed)	N
614	chr6_qbl_hap6	3891982	3891983	rs9275224	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	6p21.32	HLA-DQB1, HLA-DQA1, HLA-DRB1	rs9275224-G	0.51	6E-30		1.36	[NR]	Illumina [> 1000000] (imputed)	N
614	chr6_qbl_hap6	3891982	3891983	rs9275224	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	6p21.32	HLA-DQB1, HLA-DQA1, HLA-DRB1	rs9275224-G	0.51	6E-18	(EA)	1.38	[NR]	Illumina [> 1000000] (imputed)	N
614	chr6_qbl_hap6	3892001	3892002	rs35472814	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs35472814-C	0.2	1E-8		4.23	[3.24-5.52]	Illumina [NR] (imputed)	N
614	chr6_qbl_hap6	3892686	3892687	rs2647006	30593799	Vergara C	2018-12-26	Gastroenterology	Multi-Ancestry Genome-Wide Association Study of Spontaneous Clearance of Hepatitis C Virus.	Hepatitis C (spontaneous viral clearance)	701 European ancestry cases, 1,035 European ancestry controls, 445 African American cases, 1,756 African American controls, 173 Hispanic ancestry cases, 313 Hispanic ancestry controls	NA	6p21.32	HLA-DQB1, HLA-DQA2	rs2647006-C	0.62	1E-21		1.79	NR (AA)	Illumina [15704341] (imputed)	N
614	chr6_qbl_hap6	3892821	3892822	rs9275239	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	MTCO3P1	rs9275239-A	NR	2E-20		0.0286392	[0.023-0.035] unit decrease	Affymetrix [323123] (imputed)	N
614	chr6_qbl_hap6	3892845	3892846	rs9275241	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs9275241-?	NR	2E-13				Affymetrix [~ 8270000] (imputed)	N
614	chr6_qbl_hap6	3893051	3893052	rs9275245	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (mother's age at death or mother's attained age)	up to 699,000 individuals	NA	6p21.32	NR	rs9275245-A		3E-6				Illumina [458525]	N
614	chr6_qbl_hap6	3893401	3893402	rs2858320	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	MTCO3P1	rs2858320-A	NR	9E-24		0.0285816	[0.023-0.034] unit decrease	Affymetrix [319769] (imputed)	N
614	chr6_qbl_hap6	3893401	3893402	rs2858320	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	MTCO3P1	rs2858320-A	NR	8E-23		0.0279496	[0.022-0.034] unit decrease	Affymetrix [319769] (imputed)	N
614	chr6_qbl_hap6	3893401	3893402	rs2858320	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	MTCO3P1	rs2858320-A	NR	9E-27		0.0308142	[0.025-0.036] unit decrease	Affymetrix [321169] (imputed)	N
614	chr6_qbl_hap6	3893401	3893402	rs2858320	33119750	Vergara C	2020-10-29	J Infect Dis	A multi-ancestry sex stratified genome-wide association study of spontaneous clearance of hepatitis C virus.	Hepatitis C (spontaneous viral clearance)	239 African ancestry male cases, 1,184 African ancestry male controls, 206 African ancestry female cases, 572 African ancestry female controls, 489 European ancestry male cases, 703 European ancestry male controls, 212 European ancestry female cases, 332 European ancestry female controls, 91 Hispanic male cases, 197 Hispanic male controls, 82 Hispanic female cases, 116 Hispanic female controls	NA	6p21.32	NR	rs2858320-G	0.58	2E-12	(female)	1.96	[NR]	Illumina [5730693] (imputed)	N
614	chr6_qbl_hap6	3893683	3893684	rs9275260	28698626	Lopez-Mejias R	2017-07-11	Sci Rep	A genome-wide association study suggests the HLA Class II region as the major susceptibility locus for IgA vasculitis.	Immunoglobulin A vasculitis	285 European ancestry cases, 1,006 European ancestry controls	NA	6p21.32	HLA-DQA1, HLA-DQB1	rs9275260-?		3E-9		1.7857143	[1.47-2.17]	Illumina [1909910] (imputed)	N
614	chr6_qbl_hap6	3894103	3894104	rs79870097	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	6p21.32	NR	rs79870097-?	NR	6E-30	(conditional)			Affymetrix [15688218] (imputed)	N
614	chr6_qbl_hap6	3894377	3894378	rs558121619	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Polyunsaturated fatty acid levels	115,006 European ancestry individuals	NA	6p21.32		rs558121619-A	0.542695	8E-10		0.0254897	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3894377	3894378	rs558121619	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-6 fatty acid levels	115,006 European ancestry individuals	NA	6p21.32		rs558121619-A	0.542695	3E-10		0.0262771	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3894377	3894378	rs558121619	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Linoleic acid levels	115,006 European ancestry individuals	NA	6p21.32		rs558121619-A	0.542695	2E-8		0.0235541	[0.015-0.032] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3894388	3894389	rs2858317	33119750	Vergara C	2020-10-29	J Infect Dis	A multi-ancestry sex stratified genome-wide association study of spontaneous clearance of hepatitis C virus.	Hepatitis C (spontaneous viral clearance)	239 African ancestry male cases, 1,184 African ancestry male controls, 206 African ancestry female cases, 572 African ancestry female controls, 489 European ancestry male cases, 703 European ancestry male controls, 212 European ancestry female cases, 332 European ancestry female controls, 91 Hispanic male cases, 197 Hispanic male controls, 82 Hispanic female cases, 116 Hispanic female controls	NA	6p21.32	NR	rs2858317-A	0.63	1E-11	(male)	1.73	[NR]	Illumina [5730693] (imputed)	N
614	chr6_qbl_hap6	3894388	3894389	rs2858317	31263063	Dufek S	2019-07-01	J Am Soc Nephrol	Genetic Identification of Two Novel Loci Associated with Steroid-Sensitive Nephrotic Syndrome.	Childhood steroid-sensitive nephrotic syndrome	422 European ancestry cases, 5,642 European ancestry controls	NA	6p21.32	HLA-DQB1	rs2858317-?	NR	4E-31	(conditioned on rs9273542)			Illumina [5216266] (imputed)	N
614	chr6_qbl_hap6	3894452	3894453	rs9275263	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic hepatitis C infection	273 European ancestry cases, 351,740 European ancestry controls, 7,110 East Asian ancestry cases, 169,588 East Asian ancestry controls	NA	6p21.32		rs9275263-G	NR	2E-12		0.1228	[0.088-0.157] unit decrease	Affymetrix, Illumina [20457788] (imputed)	N
614	chr6_qbl_hap6	3894533	3894534	rs9275267	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic hepatitis C infection	7,110 East Asian ancestry cases, 169,588 East Asian ancestry controls	NA	6p21.32		rs9275267-G	0.623579949	3E-12		0.1242382	[0.089-0.159] unit decrease	Illumina [13429570] (imputed)	N
614	chr6_qbl_hap6	3894641	3894642	rs9275271	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR++ monocyte Absolute Count	3,579 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9275271-C	0.62317	2E-14		0.2356	[0.18-0.3] unit increase	Illumina [18377365] (imputed)	N
614	chr6_qbl_hap6	3894654	3894655	rs9275272	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Prostate cancer	10,792 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs9275272-C	NR	2E-7		1.0948106	NR	Affymetrix [7846216] (imputed)	N
614	chr6_qbl_hap6	3895028	3895029	rs9275281	28373541	Yang J	2017-04-03	Proc Natl Acad Sci U S A	Genetic signatures of high-altitude adaptation in Tibetans.	High altitude adaptation	3,008 Tibetan (founder/genetic isolate) individuals and 7,287 East Asian individuals	NA	6p21.32	HLA-DQB1	rs9275281-G	0.365	1E-10				Illumina [7300000] (imputed)	N
614	chr6_qbl_hap6	3895029	3895030	rs114169440	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs114169440-A	0.2	2E-8		4.08	[3.13-5.31]	Illumina [NR] (imputed)	N
614	chr6_qbl_hap6	3895082	3895083	rs9275282	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs9275282-?	NR	1E-14				Affymetrix [~ 8270000] (imputed)	N
614	chr6_qbl_hap6	3895266	3895267	rs113523948	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs113523948-C	0.063	3E-21	(conditional)	0.578	[0.46-0.69]	Illumina [11270530] (imputed)	N
614	chr6_qbl_hap6	3895367	3895368	rs112927854	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Low density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	6p21.32	HLA-DQB1, HLA-DQA2	rs112927854-?		4E-9		0.0728	[0.049-0.097] unit decrease	Illumina [31500000] (imputed)	N
614	chr6_qbl_hap6	3895397	3895398	rs9275292	27286809	Ligthart S	2016-06-10	BMC Genomics	Bivariate genome-wide association study identifies novel pleiotropic loci for lipids and inflammation.	C-reactive protein levels or LDL-cholesterol levels (pleiotropy)	65,000 individuals (C-reactive protein), 95,454 individuals (LDL-cholesterol)	NA	6p21.32	HLA-DQB1	rs9275292-A	NR	3E-8				NR [2501749] (imputed)	N
614	chr6_qbl_hap6	3895505	3895506	rs13205804	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	6p21.32	intergenic	rs13205804-A	0.8815	3E-21		0.0391	[0.031-0.047] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
614	chr6_qbl_hap6	3895739	3895740	rs3129720	23472185	Mero IL	2013-03-05	PLoS One	Oligoclonal band status in Scandinavian multiple sclerosis patients is associated with specific genetic risk alleles.	Multiple sclerosis (OCB status)	1,367 European ancestry OCB positive cases, 161 European ancestry OCB negative cases, 428 European ancestry controls	NA	6p21.32	HLA-DQB1	rs3129720-?	NR	5E-15	(OCB positive vs. controls)	1.91	[1.62-2.24]	Illumina [495970]	N
614	chr6_qbl_hap6	3895739	3895740	rs3129720	22493691	Eriksson N	2012-04-06	PLoS One	Novel associations for hypothyroidism include known autoimmune risk loci.	Hypothyroidism	3,736 European ancestry cases, 35,546 European ancestry controls	NA	6p21.32	HLA-DQA2, HLA-DQB1, HLA-DRB9, HLA-DRB5, HLA-DRB1, HLA-DQA1	rs3129720-C	0.764	5E-7		1.16	(1.10-1.23)	Illumina [870065]	N
614	chr6_qbl_hap6	3895872	3895873	rs17427445	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs17427445-A	0.2	1E-8		4.23	[3.24-5.52]	Illumina [NR] (imputed)	N
614	chr6_qbl_hap6	3895959	3895960	rs6457617	31050781	Zhao SX	2019-05-03	JAMA Netw Open	Assessment of Molecular Subtypes in Thyrotoxic Periodic Paralysis and Graves Disease Among Chinese Han Adults: A Population-Based Genome-Wide Association Study.	Thyrotoxic hypokalemic periodic paralysis and Graves disease	171 Han Chinese ancestry cases, 2,160 Han Chinese ancestry controls	362 Han Chinese ancestry cases, 1,089 Han Chinese ancestry controls	6p21.32	HLA-DQB1, HLA-DQA2	rs6457617-?	0.47	2E-17		1.74	[1.53-1.97]	Illumina [2752055] (imputed)	N
614	chr6_qbl_hap6	3895959	3895960	rs6457617	25616667	Goris A	2015-01-22	Brain	Genetic variants are major determinants of CSF antibody levels in multiple sclerosis.	Immunoglobulin G index levels in multiple sclerosis	773 European ancestry Individuals, 165 Individuals	2,072 Individuals	6p21.32	HLA-DQA1	rs6457617-A	NR	7E-17		0.127	[NR] unit decrease	NR [485236]	N
614	chr6_qbl_hap6	3895959	3895960	rs6457617	21841780	Chu X	2011-08-14	Nat Genet	A genome-wide association study identifies two new risk loci for Graves' disease.	Graves' disease	1,468 Chinese ancestry cases, 1,490 Chinese ancestry controls	3,994 Chinese ancestry cases, 3,510 Chinese ancestry controls	6p21.32	HLA, DRB1, DQA1, DQB1	rs6457617-T	0.45	7E-33		1.4	[1.32-1.48]	Illumina [486049]	N
614	chr6_qbl_hap6	3895959	3895960	rs6457617	21750679	Allanore Y	2011-07-07	PLoS Genet	Genome-wide scan identifies TNIP1, PSORS1C1, and RHOB as novel risk loci for systemic sclerosis.	Systemic sclerosis	564 European ancestry cases, 1,776 European ancestry controls	1,682 European ancestry cases, 3,926 European ancestry controls	6p21.32	HLA, DQB1	rs6457617-T	0.50	2E-37		1.61	[1.49-1.72]	Illumina [489814]	N
614	chr6_qbl_hap6	3895959	3895960	rs6457617	20383147	Radstake TR	2010-04-11	Nat Genet	Genome-wide association study of systemic sclerosis identifies CD247 as a new susceptibility locus.	Systemic sclerosis	2,296 European ancestry cases, 5,171 European ancestry controls	2,753 European ancestry cases, 4,569 European ancestry controls	6p21.32	HLA-DQB1	rs6457617-?	0.53	4E-17		1.37	[1.28-1.47]	Illumina [279621]	N
614	chr6_qbl_hap6	3895959	3895960	rs6457617	18668548	Julia A	2008-08-01	Arthritis Rheum	Genome-wide association study of rheumatoid arthritis in the Spanish population: KLF12 as a risk locus for rheumatoid arthritis susceptibility.	Rheumatoid arthritis	400 European ancestry cases, 400 European ancestry controls	410 European ancestry cases, 394 European ancestry controls	6p21.32	HLA-DQA2, HLA-DQA1	rs6457617-?	NR	1E-9				Illumina [299918]	N
614	chr6_qbl_hap6	3895959	3895960	rs6457617	17554300	Wellcome Trust Case Control Consortium	2007-06-07	Nature	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Rheumatoid arthritis	1,860 European ancestry cases, 2,938 European ancestry controls	NA	6p21.32	MHC	rs6457617-T	0.49	5E-75		2.36	[1.97-2.84]	Affymetrix [469557]	N
614	chr6_qbl_hap6	3896044	3896045	rs34677551	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs34677551-C	0.2	1E-8		4.23	[3.24-5.52]	Illumina [NR] (imputed)	N
614	chr6_qbl_hap6	3896062	3896063	rs34392107	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	6p21.32	HLA-DQB1	rs34392107-G	0.883508	6E-45		0.0459707	[0.04-0.052] unit decrease	Affymetrix [NR] (imputed)	N
614	chr6_qbl_hap6	3896107	3896108	rs6457620	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	6p21.32	HLA locus	rs6457620-C	0.51	2E-16		0.029	[NR] unit decrease	Affymetrix, Illumina [2834208] (imputed)	N
614	chr6_qbl_hap6	3896107	3896108	rs6457620	18794853	Raychaudhuri S	2008-09-14	Nat Genet	Common variants at CD40 and other loci confer risk of rheumatoid arthritis.	Rheumatoid arthritis	3,393 European ancestry cases, 12,460 European ancestry controls	3,929 European ancestry cases, 5,807 European ancestry controls	6p21.32	HLA-DRB1	rs6457620-?	0.50	4E-186		2.55	[2.40-2.71]	Affymetrix, Illumina [at least 315971] (imputed)	N
614	chr6_qbl_hap6	3896146	3896147	rs35900855	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs35900855-G	0.2	1E-8		4.23	[3.24-5.52]	Illumina [NR] (imputed)	N
614	chr6_qbl_hap6	3896440	3896441	rs7745040	29534301	Nishida N	2018-03-13	Hepatology	Key HLA-DRB1-DQB1 haplotypes and role of the BTNL2 gene for response to a hepatitis B vaccine.	Response to hepatitis B vaccine	107 Japanese ancestry low responder individuals, 351 Japanese ancestry intermediate responder individuals, 735 Japanese ancestry high responder individuals	NA	6p21.32	HLA-DQA2	rs7745040-?		2E-10		0.162	unit decrease	Affymetrix [427664]	N
614	chr6_qbl_hap6	3896566	3896567	rs2647012	33649182	Penova M	2021-03-01	Proc Natl Acad Sci U S A	Genome wide association study of HTLV-1-associated myelopathy/tropical spastic paraparesis in the Japanese population.	HTLV-1 associated myelopathy	731 Japanese ancestry cases, 846 Japanese ancestry controls	NA	6p21.32		rs2647012-T	0.17	5E-7		0.56	[0.45-0.7]	Illumina [126394]	N
614	chr6_qbl_hap6	3896566	3896567	rs2647012	24925725	Chung SA	2014-06-12	J Am Soc Nephrol	Lupus nephritis susceptibility loci in women with systemic lupus erythematosus.	Lupus nephritis in systemic lupus erythematosus	588 European ancestry cases, 1,412 European ancestry controls	NA	6p21.32	intergenic	rs2647012-?	NR	3E-7	(Additive)	1.52	[1.3-1.75]	Affymetrix, Illumina [1621689] (imputed)	N
614	chr6_qbl_hap6	3896566	3896567	rs2647012	21533074	Smedby KE	2011-04-21	PLoS Genet	GWAS of follicular lymphoma reveals allelic heterogeneity at 6p21.32 and suggests shared genetic susceptibility with diffuse large B-cell lymphoma.	Follicular lymphoma	379 European ancestry cases, 791 European ancestry controls	1,049 European ancestry cases, 3,952 European ancestry controls	6p21.32	HLA-DQB1	rs2647012-G	0.56	2E-21		1.56	[1.43-1.72]	Illumina [298168]	N
614	chr6_qbl_hap6	3896566	3896567	rs2647012	21408207	Chung SA	2011-03-03	PLoS Genet	Differential genetic associations for systemic lupus erythematosus based on anti-dsDNA autoantibody production.	Systemic lupus erythematosus	811 anti-dsDNA positive European ancestry cases, 906 anti-dsDNA negative European ancestry cases, 4,813 European ancestry controls	NA	6p21.32	HLA-DQA2, HLA-DQA1	rs2647012-A	0.44	8E-6	(case-only)	1.38	[1.20-1.59]	Illumina [421318] (imputed)	N
614	chr6_qbl_hap6	3896736	3896737	rs115255544	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs115255544-G	0.2	1E-8		4.23	[3.24-5.52]	Illumina [NR] (imputed)	N
614	chr6_qbl_hap6	3896899	3896900	rs116303320	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Total cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	6p21.32	HLA-DQB1, HLA-DQA2	rs116303320-?		5E-13		0.0603	[0.044-0.077] unit decrease	Illumina [31500000] (imputed)	N
614	chr6_qbl_hap6	3896988	3896989	rs2647003	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.32	NR	rs2647003-?	NR	3E-13				Affymetrix [~ 8270000] (imputed)	N
614	chr6_qbl_hap6	3897068	3897069	rs9357152	21896673	Chen D	2011-09-10	Hum Mol Genet	Genome-wide association study of HPV seropositivity.	HPV seropositivity	1,286 European ancestry lung cancer cases, 679 European ancestry head and neck cancer cases, 811 European ancestry kidney cancer cases, 2,035 European ancestry controls	1,307 Hispanic head and neck cancer cases, 1,037 Hispanic controls		HLA-DQB1	rs9357152-G	0.33	1E-14				Illumina [316015]	N
614	chr6_qbl_hap6	3897223	3897224	rs17206126	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs17206126-T	0.972723	3E-12		0.087804	[0.063-0.112] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3897233	3897234	rs17212462	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs17212462-T	0.2	1E-8		4.23	[3.24-5.52]	Illumina [NR] (imputed)	N
614	chr6_qbl_hap6	3897358	3897359	rs17212483	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs17212483-T	0.2	9E-9		4.27	[3.27-5.58]	Illumina [NR] (imputed)	N
614	chr6_qbl_hap6	3897528	3897529	rs10484561	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs10484561-G	0.2	2E-8		4.22	[3.22-5.52]	Illumina [NR] (imputed)	N
614	chr6_qbl_hap6	3897528	3897529	rs10484561	20639881	Conde L	2010-07-18	Nat Genet	Genome-wide association study of follicular lymphoma identifies a risk locus at 6p21.32.	Follicular lymphoma	681 European ancestry cases, 750 European ancestry controls	up to 3,164 European ancestry cases, 6,208 European ancestry controls	6p21.32	HLA-DQB1	rs10484561-G	0.11	1E-29	(FL)	1.95	[1.72-2.22]	Illumina [312768]	N
614	chr6_qbl_hap6	3897795	3897796	rs17212553	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs17212553-T	0.2	1E-8		4.23	[3.24-5.52]	Illumina [NR] (imputed)	N
614	chr6_qbl_hap6	3898403	3898404	rs9275319	23242368	Jiang DK	2012-12-16	Nat Genet	Genetic variants in STAT4 and HLA-DQ genes confer risk of hepatitis B virus-related hepatocellular carcinoma.	Hepatocellular carcinoma in hepatitis B infection	1,161 Chinese ancestry cases, 1,353 Chinese ancestry controls	4,319 Chinese ancestry cases, 4,966 Chinese ancestry controls	6p21.32	HLA-DQ	rs9275319-A	0.88	3E-17		1.49	[1.36-1.63]	Illumina [1672517] (imputed)	N
614	chr6_qbl_hap6	3898634	3898635	rs1794282	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.32	BTNL2, XXbac-BPG246D15.9, XXbac-BPG154L12.5, XXbac-BPG154L12.4, C6orf10, HNRNPA1P2, RNU6-603P, HLA-DRA, HLA-DRB9, HLA-DOB	rs1794282-T	0.08080808	3E-19	(EA, MHC class I polypeptide-related sequence B)	0.7066	[0.56-0.86] unit decrease	Affymetrix [509946]	N
614	chr6_qbl_hap6	3898768	3898769	rs9275326	28892059	Chang D	2017-09-11	Nat Genet	A meta-analysis of genome-wide association studies identifies 17 new Parkinson's disease risk loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	5,851 European ancestry cases, 5,866 European ancestry controls	6p21.32	HLA-DRB6, HLA-DQA1	rs9275326-C	0.895	1E-13		1.1764705	[1.12-1.22]	Illumina [11933700] (imputed)	N
614	chr6_qbl_hap6	3898768	3898769	rs9275326	25064009	Nalls MA	2014-07-27	Nat Genet	Large-scale meta-analysis of genome-wide association data identifies six new risk loci for Parkinson's disease.	Parkinson's disease	13,708 European ancestry cases, 95,282 European ancestry controls	5,353 European ancestry cases, 5,551 European ancestry controls	6p21.32	HLA-DQB	rs9275326-C	0.906	1E-12		1.21	[1.16-1.26]	Illumina [7893274] (imputed)	N
614	chr6_qbl_hap6	3899175	3899176	rs17427564	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs17427564-C	0.2	1E-8		4.23	[3.24-5.52]	Illumina [NR] (imputed)	N
614	chr6_qbl_hap6	3899215	3899216	rs9275334	26272072	Jiang X	2015-08-13	Rheumatology (Oxford)	An Immunochip-based interaction study of contrasting interaction effects with smoking in ACPA-positive versus ACPA-negative rheumatoid arthritis.	ACPA-positive rheumatoid arthritis (smoking interaction)	340 European ancestry never-smoker cases, 493 European ancestry ever-smoker cases, 746 European ancestry never-smoker controls, 994 European ancestry ever-smoker controls	187 European ancestry never-smoker cases, 421 European ancestry ever-smoker cases, 461 European ancestry never-smoker controls, 447 European ancestry ever-smoker controls	6p21.32	NR	rs9275334-?	NR	2E-6	(adjusted for HLA shared epitope)	1.724138	[1.22-2.94]	Illumina [133648] (imputed)	N
614	chr6_qbl_hap6	3899279	3899280	rs1794280	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hyperthyroidism	3,557 European ancestry cases, 456,942 European ancestry controls, 994 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	6p21.32		rs1794280-T	NR	2E-44		0.5463	[0.47-0.62] unit increase	Affymetrix, Illumina [25841580] (imputed)	N
614	chr6_qbl_hap6	3899279	3899280	rs1794280	30854688	Wang C	2019-03-10	Hepatology	Genome Wide Association Studies of Specific Antinuclear Autoantibody Sub-phenotypes in Primary Biliary Cholangitis.	Anti-sp100 seropositivity in primary biliary cholangitis	211 Han Chinese ancestry cases, 711 Han Chinese ancestry controls	234 Han Chinese ancestry cases, 1,018 Han Chinese ancestry controls	6p21.32	NR	rs1794280-T	0.181	6E-28		3.89	[3.05-4.96]	Illumina [794531]	N
614	chr6_qbl_hap6	3899472	3899473	rs17427599	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (anti-inflammatory and antirheumatic products, non-steroids)	29,694 East Asian ancestry cases, 149,032 East Asian ancestry controls	NA	6p21.32		rs17427599-T	0.278563857	1E-13		0.07483624	[0.055-0.095] unit increase	Illumina [13429980] (imputed)	N
614	chr6_qbl_hap6	3899581	3899582	rs1794514	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Autoimmune hepatitis	821 European ancestry cases, 484,413 European ancestry controls, 85 East Asian ancestry cases, 166,529 East Asian ancestry controls	NA	6p21.32		rs1794514-C	NR	6E-14		0.5013	[0.37-0.63] unit increase	Affymetrix, Illumina [25843756] (imputed)	N
614	chr6_qbl_hap6	3899614	3899615	rs188230545	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	124,341 East Asian ancestry individuals	NA	6p21.32		rs188230545-T	0.154874	1E-8		0.0301327	[0.02-0.04] unit increase	Illumina [13476323] (imputed)	N
614	chr6_qbl_hap6	3899628	3899629	rs3104394	32534018	Liu X	2020-06-10	Brain Behav Immun	Genetic factors underlying the bidirectional relationship between autoimmune and mental disorders - findings from a Danish population-based study.	Autoimmune traits	1,383 Danish ancestry cases, 62,656 Danish ancestry controls	NA	6p21.32	NR	rs3104394-G	0.16	3E-20		0.57	[0.50-0.65]	NR [7721839] (imputed)	N
614	chr6_qbl_hap6	3899704	3899705	rs2133037	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	IgG levels	15,536 Icelandic ancestry individuals	2,158 Swedish ancestry individuals	6p21.32	HLA-DQB1	rs2133037-A	0.0524	2E-14		0.19	NR SD units decrease	Illumina [21568490] (imputed)	N
614	chr6_qbl_hap6	3899771	3899772	rs9275349	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	Systemic lupus erythematosus	1,639 East Asian ancestry cases, 2,410 East Asian ancestry controls	NA			rs9275349-C	NR	5E-25		0.5726	[0.46-0.68] unit decrease	Illumina [NR] (imputed)	N
614	chr6_qbl_hap6	3899862	3899863	rs2856723	28921602	Lee MH	2017-09-16	Hepatology	Human leukocyte antigen variants and risk of hepatocellular carcinoma modified by hepatitis C virus genotypes: A genome-wide association study.	Hepatocellular carcinoma in hepatitis C infection	502 Chinese ancestry cases, 749 Chinese ancestry controls	669 Chinese ancestry cases, 429 Chinese ancestry controls	6p21.32	HLA-DQB1	rs2856723-?		3E-43		2.68	[2.32-3.09]	Affymetrix [576032]	N
614	chr6_qbl_hap6	3899995	3899996	rs9275358	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p21.32	HLA-DQB1	rs9275358-G	0.475	3E-7		0.083	[0.052-0.114] unit decrease	Affymetrix, Illumina [7374092] (imputed)	N
614	chr6_qbl_hap6	3900010	3900011	rs2647044	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	6p21.32	BRD2, BTNL2, C6orf10, HCG23, HLA-DMA, HLA-DMB, HLA-DOA, HLA-DOB, HLA-DPA1, HLA-DQA1, HLA-DQA2, HLA-DQB1, HLA-DQB2, HLA-DRA, HLA-DRB1, HLA-DRB5, HLA-DRB6, LOC100294145, NOTCH4, PSMB8, PSMB9, TAP1, TAP2, TAPSAR1	rs2647044-A	0.14736	4E-15		1.1522182	[1.12-1.19]	Affymetrix [8274727] (imputed)	N
614	chr6_qbl_hap6	3900010	3900011	rs2647044	21946350	Soler Artigas M	2011-09-25	Nat Genet	Genome-wide association and large-scale follow up identifies 16 new loci influencing lung function.	Pulmonary function	48,201 European ancestry individuals	46,411 European ancestry individuals	6p21.32	HLA-DQB1	rs2647044-G	NR	6E-6	(FEV1/FVC)	0.044	[0.024-0.064] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
614	chr6_qbl_hap6	3900010	3900011	rs2647044	17632545	Hakonarson H	2007-07-15	Nature	A genome-wide association study identifies KIAA0350 as a type 1 diabetes gene.	Type 1 diabetes	467 European ancestry trios, 561 European ancestry cases, 1,143 European ancestry controls	390 European ancestry trios, 1,333 European ancestry cases from 549 families	6p21.32	HLA-DRB1	rs2647044-A	0.13	1E-16		8.3	[6.97-9.89]	Illumina [543071]	N
614	chr6_qbl_hap6	3900064	3900065	rs36030018	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs36030018-C	0.109	3E-36	(conditional)	1.586	[1.51-1.66]	Illumina [11270530] (imputed)	N
614	chr6_qbl_hap6	3900131	3900132	rs2856721	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	6p21.32		rs2856721-C	0.467255784	1E-9		0.056245904	[0.038-0.074] unit decrease	Illumina [13429769] (imputed)	N
614	chr6_qbl_hap6	3900131	3900132	rs2856721	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	46,511 Asian ancestry cases, 169,776 Asian ancestry controls	NA	6p21.32	NR	rs2856721-C	0.4659	5E-10		0.0572	[0.039-0.075] unit decrease	Affymetrix, Illumina [1077427] (imputed)	N
614	chr6_qbl_hap6	3900201	3900202	rs2647045	23349640	Vijai J	2013-01-17	PLoS Genet	Susceptibility loci associated with specific and shared subtypes of lymphoid malignancies.	Lymphoma	275 Follicular non-Hodgkin's Lymphoma cases, 269 diffuse large B-cell non-Hodgkin's Lymphoma cases, 198 other non-Hodgkin's Lymphoma cases, 202 Hodgkin's Lymphoma cases, 4,044 controls	202 European ancestry Follicular non-Hodgkin's Lymphoma cases, 367 European ancestry diffuse large B-cell non-Hodgkin's Lymphoma cases, 577 European ancestry other non-Hodgkin's Lymphoma cases, 99 European ancestry Hodgkin's Lymphoma cases, 2,596 European ancestry controls	6p21.32	HLA-DQA2, HLA-DQB1	rs2647045-?	NR	4E-10	(FL)	1.69	[NR]	Affymetrix [530583]	N
614	chr6_qbl_hap6	3900424	3900425	rs2858310	27286809	Ligthart S	2016-06-10	BMC Genomics	Bivariate genome-wide association study identifies novel pleiotropic loci for lipids and inflammation.	C-reactive protein levels or total cholesterol levels (pleiotropy)	65,000 individuals (C-reactive protein), 100,184 individuals (total cholesterol)	NA	6p21.32	HLA-DQB1	rs2858310-A	NR	4E-12				NR [2501549] (imputed)	N
614	chr6_qbl_hap6	3900437	3900438	rs2647046	23349640	Vijai J	2013-01-17	PLoS Genet	Susceptibility loci associated with specific and shared subtypes of lymphoid malignancies.	Lymphoma	275 Follicular non-Hodgkin's Lymphoma cases, 269 diffuse large B-cell non-Hodgkin's Lymphoma cases, 198 other non-Hodgkin's Lymphoma cases, 202 Hodgkin's Lymphoma cases, 4,044 controls	202 European ancestry Follicular non-Hodgkin's Lymphoma cases, 367 European ancestry diffuse large B-cell non-Hodgkin's Lymphoma cases, 577 European ancestry other non-Hodgkin's Lymphoma cases, 99 European ancestry Hodgkin's Lymphoma cases, 2,596 European ancestry controls	6p21.32	HLA-DQA2, HLA-DQB1	rs2647046-?	NR	2E-6	(NHL)	1.25	[1.14-1.37]	Affymetrix [530583]	N
614	chr6_qbl_hap6	3900540	3900541	rs3135002	29404672	Roshandel D	2018-02-05	Diabetologia	Meta-genome-wide association studies identify a locus on chromosome 1 and multiple variants in the MHC region for serum C-peptide in type 1 diabetes.	Random C-peptide levels in type I diabetes	1,497 European ancestry individuals	NA	6p21.32	MHC	rs3135002-A	0.03	3E-8				Illumina [8320327] (imputed)	N
614	chr6_qbl_hap6	3900540	3900541	rs3135002	29404672	Roshandel D	2018-02-05	Diabetologia	Meta-genome-wide association studies identify a locus on chromosome 1 and multiple variants in the MHC region for serum C-peptide in type 1 diabetes.	C-peptide levels in type I diabetes	3,479 European ancestry individuals	NA	6p21.32	MHC	rs3135002-A	0.03	7E-8				Illumina [7988630] (imputed)	N
614	chr6_qbl_hap6	3901119	3901120	rs1612904	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of HDL particles	115,082 European ancestry individuals	NA	6p21.32		rs1612904-C	0.38135	1E-10		0.0256884	[0.018-0.033] unit decrease	NR [11722792] (imputed)	N
614	chr6_qbl_hap6	3901119	3901120	rs1612904	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Perceived unattractiveness to mosquitoes	16,576 European ancestry individuals	NA	6p21.32	intergenic	rs1612904-C	NR	1E-8		0.136111	[0.089-0.183] unit increase	Illumina [7433384] (imputed)	N
614	chr6_qbl_hap6	3901119	3901120	rs1612904	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.32	Intergenic	rs1612904-C	NR	1E-13		0.0245272	[0.018-0.031] unit increase	Illumina [13520550] (imputed)	N
614	chr6_qbl_hap6	3901256	3901257	rs9275390	21779181	Gorlova O	2011-07-14	PLoS Genet	Identification of novel genetic markers associated with clinical phenotypes of systemic sclerosis through a genome-wide association strategy.	Systemic sclerosis	2,296 European ancestry cases, 5,172 European ancestry controls	3,175 European ancestry cases, 4,210 European ancestry controls	6p21.32	HLA-DQB1	rs9275390-?	0.75	1E-7	(ATA positive)	1.61	[1.35-1.92]	Illumina [NR] (imputed)	N
614	chr6_qbl_hap6	3901256	3901257	rs9275390	21779181	Gorlova O	2011-07-14	PLoS Genet	Identification of novel genetic markers associated with clinical phenotypes of systemic sclerosis through a genome-wide association strategy.	Systemic sclerosis	2,296 European ancestry cases, 5,172 European ancestry controls	3,175 European ancestry cases, 4,210 European ancestry controls	6p21.32	HLA-DQB1	rs9275390-?	0.25	3E-54	(ACA positive)	2.38	[2.13-2.67]	Illumina [NR] (imputed)	N
614	chr6_qbl_hap6	3901473	3901474	rs11752643	31213470	Moon JY	2019-06-18	Diabetes Care	A Genome-Wide Association Study Identifies Blood Disorder-Related Variants Influencing Hemoglobin A1c With Implications for Glycemic Status in U.S. Hispanics/Latinos.	Glycated hemoglobin levels	9,636 Hispanic/Latino individuals	4,777 Hispanic/Latino individuals	6p21.32	HLA-DQA2	rs11752643-T	0.017	2E-6		0.096	[0.061-0.131] % increase	Illumina [11510031] (imputed)	N
614	chr6_qbl_hap6	3901473	3901474	rs11752643	21971053	Takeuchi F	2011-10-05	Eur J Hum Genet	Genome-wide association study of coronary artery disease in the Japanese.	Coronary heart disease	806 Japanese ancestry cases, 1,337 Japanese ancestry controls	3,593 Japanese ancestry cases, 6,335 Japanese ancestry controls	6p21.32	HLA, DRB-DQB	rs11752643-T	0.06	5E-7		1.26	[1.15-1.38]	Illumina [451382]	N
614	chr6_qbl_hap6	3901867	3901868	rs2647050	26030696	Cho MH	2015-06-01	Am J Respir Crit Care Med	A Genome-Wide Association Study of Emphysema and Airway Quantitative Imaging Phenotypes.	Emphysema imaging phenotypes	5,385 European ancestry chronic obstructive pulmonary disease cases, 901 African American chronic obstructive pulmonary disease cases, 3,613 European ancestry controls, 2,132 African American controls	NA	6p21.32	HLA-DQB1	rs2647050-T	NR	1E-6	(Perc15, All)	1.6	[0.66-2.54] unit increase	Illumina [7600000] (imputed)	N
614	chr6_qbl_hap6	3902055	3902056	rs9275406	23918589	Negi S	2013-12-01	Arthritis Rheum	A genome-wide association study reveals ARL15, a novel non-HLA susceptibility gene for rheumatoid arthritis in North Indians.	Rheumatoid arthritis	706 North Indian ancestry cases, 761 North Indian ancestry controls	927 North Indian ancestry cases, 1,148 North Indian ancestry controls	6p21.32	HLA-DQA2, HLA-DQB1, C6orf10, HLA-DQA1	rs9275406-T	0.17	3E-12		2.1	[1.72-2.68]	Illumina [559348]	N
614	chr6_qbl_hap6	3902236	3902237	rs3135001	32276964	Shete S	2020-04-10	Cancer Res	A genome-wide association study identifies two novel susceptible regions for squamous cell carcinoma of the head and neck.	Head and neck squamous cell carcinoma	2,171 European ancestry cases, 4,493 European ancestry controls	5,205 European ancestry cases, 3,232 European ancestry controls	6p21.32	HLA-DQB1	rs3135001-C	0.79	1E-16		1.2987013	[1.22-1.37]	Illumina [7858089] (imputed)	N
614	chr6_qbl_hap6	3902349	3902350	rs2856718	25802187	Jiang DK	2015-04-28	Hepatology	Genetic variants in five novel loci including CFB and CD40 predispose to chronic hepatitis B.	Chronic hepatitis B infection	2,514 Chinese ancestry cases, 1,130 Chinese ancestry controls	6,600 Chinese ancestry cases, 8,127 Chinese ancestry controls	6p21.32	HLA-DQB1	rs2856718-C	0.55	7E-28		1.28	[1.22-1.33]	Illumina [3680900] (imputed)	N
614	chr6_qbl_hap6	3902349	3902350	rs2856718	23760081	Kim YJ	2013-06-10	Hum Mol Genet	A genome-wide association study identified new variants associated with the risk of chronic hepatitis B.	Chronic hepatitis B infection	400 Korean ancestry cases, 1,000 Korean ancestry controls	971 Korean ancestry cases, 1,938 Korean ancestry controls	6p21.32	HLA-DQ	rs2856718-?	NR	2E-24		1.6	[1.46-1.75]	Illumina [719265]	N
614	chr6_qbl_hap6	3902349	3902350	rs2856718	21750111	Mbarek H	2011-07-12	Hum Mol Genet	A genome-wide association study of chronic hepatitis B identified novel risk locus in a Japanese population.	Hepatitis B	458 Japanese ancestry cases, 2,056 Japanese ancestry controls	2,209 Japanese ancestry cases, 4,440 Japanese ancestry controls	6p21.32	HLA-DQB1	rs2856718-A	0.48	4E-37		1.56	[1.45-1.67]	Illumina [423627]	N
614	chr6_qbl_hap6	3902402	3902403	rs2856717	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	6p21.32	HLA-DQB1, HLA-DQA1, HLA-DRB1	rs2856717-G	0.77	5E-10	(East Asian)	1.38	[NR]	Illumina [> 1000000] (imputed)	N
614	chr6_qbl_hap6	3902402	3902403	rs2856717	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	6p21.32	HLA-DQB1, HLA-DQA1, HLA-DRB1	rs2856717-G	0.62	5E-8	(EA)	1.21	[NR]	Illumina [> 1000000] (imputed)	N
614	chr6_qbl_hap6	3902402	3902403	rs2856717	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	6p21.32	HLA-DQB1, HLA-DQA1, HLA-DRB1	rs2856717-G	0.62	1E-15		1.27	[NR]	Illumina [> 1000000] (imputed)	N
614	chr6_qbl_hap6	3902927	3902928	rs34492195	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs34492195-A	0.2	1E-8		4.23	[3.24-5.52]	Illumina [NR] (imputed)	N
614	chr6_qbl_hap6	3902991	3902992	rs2647051	30593799	Vergara C	2018-12-26	Gastroenterology	Multi-Ancestry Genome-Wide Association Study of Spontaneous Clearance of Hepatitis C Virus.	Hepatitis C (spontaneous viral clearance)	701 European ancestry cases, 1,035 European ancestry controls	NA	6p21.32	HLA-DQB1, HLA-DQA2	rs2647051-C	0.64	1E-9		1.79	NR	Illumina [8968220] (imputed)	N
614	chr6_qbl_hap6	3903072	3903073	rs9275428	28706201	Wei WH	2017-07-13	Sci Rep	Genotypic variability based association identifies novel non-additive loci DHCR7 and IRF4 in sero-negative rheumatoid arthritis.	Sero-negative rheumatoid arthritis	3,323 European ancestry cases, 15,785 European ancestry controls	NA	6p21.32	HLA-DQB1	rs9275428-?	NR	2E-24				Illumina [107144]	N
614	chr6_qbl_hap6	3903197	3903198	rs13192471	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Non-melanoma skin cancer	5,912 European ancestry cases, 181,740 European ancestry controls		6p21.32	NR	rs13192471-T	NR	7E-8		1.1493434	[1.09-1.21]	Affymetrix [5734850] (imputed)	N
614	chr6_qbl_hap6	3903197	3903198	rs13192471	20453841	Kochi Y	2010-05-09	Nat Genet	A regulatory variant in CCR6 is associated with rheumatoid arthritis susceptibility.	Rheumatoid arthritis	2,303 Japanese ancestry cases, 3,380 Japanese ancestry controls	4,768 Japanese ancestry cases, 17,359 Japanese ancestry controls	6p21.32	HLA-DRB1	rs13192471-G	0.22	2E-58		1.97	[1.82-2.14]	Illumina [393217]	N
614	chr6_qbl_hap6	3903301	3903302	rs1794511	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	IgD on IgD+ CD24+ B cell	3,656 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs1794511-G	0.25863	7E-13		0.2439	[0.18-0.31] unit decrease	Illumina [18238197] (imputed)	N
614	chr6_qbl_hap6	3903342	3903343	rs1794275	22197929	Yu XQ	2011-12-25	Nat Genet	A genome-wide association study in Han Chinese identifies multiple susceptibility loci for IgA nephropathy.	IgA nephropathy	1,434 Han Chinese ancestry cases, 4,270 Han Chinese ancestry controls	2,703 Han Chinese ancestry cases, 3,464 Han Chinese ancestry controls	6p21.32	HLA-DQA/B	rs1794275-A	0.15	3E-13		1.3	[1.21-1.39]	Illumina [444882]	N
614	chr6_qbl_hap6	3904065	3904066	rs6907732	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on CD33dim HLA DR+ CD11b+	1,634 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs6907732-G	0.45576	3E-8		0.2461	[0.16-0.33] unit increase	Illumina [16998734] (imputed)	N
614	chr6_qbl_hap6	3904183	3904184	rs3134995	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	6p21.32	HLA-DQB1, HLA-DQA2	rs3134995-T	0.242	4E-26		0.0648904	[0.053-0.077] unit decrease	Illumina [13520550] (imputed)	N
614	chr6_qbl_hap6	3904734	3904735	rs9275477	34873335	van Rheenen W	2021-12-06	Nat Genet	Common and rare variant association analyses in amyotrophic lateral sclerosis identify 15 risk loci with distinct genetic architectures and neuron-specific biology.	Amyotrophic lateral sclerosis	27,205 European ancestry cases, 110,881 European ancestry controls, 2,407 East Asian ancestry cases, 11,775 East Asian ancestry controls	NA			rs9275477-C	NR	4E-12		0.142	[0.1-0.18] unit decrease	Illumina [10461755] (imputed)	N
614	chr6_qbl_hap6	3904734	3904735	rs9275477	34873335	van Rheenen W	2021-12-06	Nat Genet	Common and rare variant association analyses in amyotrophic lateral sclerosis identify 15 risk loci with distinct genetic architectures and neuron-specific biology.	Amyotrophic lateral sclerosis	27,205 European ancestry cases, 110,881 European ancestry controls	NA	6p21.32		rs9275477-C	0.096	6E-12		0.143	[0.1-0.18] unit decrease	Illumina [10461755] (imputed)	N
614	chr6_qbl_hap6	3905667	3905668	rs9275495	26272072	Jiang X	2015-08-13	Rheumatology (Oxford)	An Immunochip-based interaction study of contrasting interaction effects with smoking in ACPA-positive versus ACPA-negative rheumatoid arthritis.	ACPA-positive rheumatoid arthritis (smoking interaction)	340 European ancestry never-smoker cases, 493 European ancestry ever-smoker cases, 746 European ancestry never-smoker controls, 994 European ancestry ever-smoker controls	187 European ancestry never-smoker cases, 421 European ancestry ever-smoker cases, 461 European ancestry never-smoker controls, 447 European ancestry ever-smoker controls	6p21.32	NR	rs9275495-?	NR	2E-6	(adjusted for HLA shared epitope)	1.724138	[1.22-2.94]	Illumina [133648] (imputed)	N
614	chr6_qbl_hap6	3905819	3905820	rs9275497	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6p21.32	MTCO3P1	rs9275497-G	0.239038	1E-18		0.025688766	[0.02-0.031] unit increase	Affymetrix [93095623] (imputed)	N
614	chr6_qbl_hap6	3906318	3906319	rs35332745	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs35332745-C	0.2	2E-8		4.11	[3.16-5.35]	Illumina [NR] (imputed)	N
614	chr6_qbl_hap6	3906422	3906423	rs9275511	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Adult onset asthma or type 2 diabetes	33,418 European ancestry asthma cases, 393,186 European ancestry asthma controls, 159,208 European ancestry diabetes cases and controls	NA	6p21.32	NR	rs9275511-?	NR	4E-18				Affymetrix [up to 8270000] (imputed)	N
614	chr6_qbl_hap6	3906736	3906737	rs9275516	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs9275516-A	0.48	1E-8		0.18	[0.13-0.25]	Illumina [NR] (imputed)	N
614	chr6_qbl_hap6	3906818	3906819	rs17206287	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs17206287-A	0.858	2E-12		1.2	[1.15-1.25]	Illumina [11270530] (imputed)	N
614	chr6_qbl_hap6	3906830	3906831	rs1794265	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	NR	rs1794265-C	0.945894807901907	8E-6	(IGP1)	0.3014	[0.17-0.43] unit decrease	Illumina [~ 2500000] (imputed)	N
614	chr6_qbl_hap6	3906830	3906831	rs1794265	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	NR	rs1794265-C	0.945736455079007	1E-6	(IGP19)	0.3272	[0.2-0.46] unit decrease	Illumina [~ 2500000] (imputed)	N
614	chr6_qbl_hap6	3906830	3906831	rs1794265	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	NR	rs1794265-C	0.945425811930783	3E-7	(IGP41)	0.3448	[0.21-0.48] unit decrease	Illumina [~ 2500000] (imputed)	N
614	chr6_qbl_hap6	3907160	3907161	rs17206350	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	MTCO3P1	rs17206350-C	NR	9E-9		0.0179759	[0.012-0.024] unit increase	Affymetrix [323858] (imputed)	N
614	chr6_qbl_hap6	3907160	3907161	rs17206350	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	MTCO3P1	rs17206350-C	NR	4E-8		0.0171917	[0.011-0.023] unit increase	Affymetrix [127266] (imputed)	N
614	chr6_qbl_hap6	3907160	3907161	rs17206350	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	MTCO3P1	rs17206350-C	NR	2E-8		0.0159877	[0.01-0.022] unit increase	Affymetrix [321114] (imputed)	N
614	chr6_qbl_hap6	3907202	3907203	rs9275524	25608926	Betz RC	2015-01-22	Nat Commun	Genome-wide meta-analysis in alopecia areata resolves HLA associations and reveals two new susceptibility loci.	Alopecia areata	2,332 European ancestry cases and 5,233 European ancestry controls	764 European ancestry cases and 2,256 European ancestry controls	6p21.32	HLA-DQB1	rs9275524-C	NR	2E-60		1.92		Illumina [1233578] (imputed)	N
614	chr6_qbl_hap6	3907202	3907203	rs9275524	23453885	Smoller JW	2013-02-27	Lancet	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NA	6p21.32	intergenic	rs9275524-T		2E-7	(Modelling analysis)	1.07	[1.04-1.09]	NR [1252901] (imputed)	N
614	chr6_qbl_hap6	3907563	3907564	rs12525220	24782177	Jiang L	2014-05-01	Arthritis Rheumatol	Novel risk loci for rheumatoid arthritis in Han Chinese and congruence with risk variants in Europeans.	Rheumatoid arthritis	433 Han Chinese ancestry ACPA positive cases, 519 Han Chinese ancestry ACPA negative cases, 943 Han Chinese ancestry controls	1,032 Han Chinese ancestry ACPA positive cases, 1,100 Han Chinese ancestry ACPA negative cases, 2,553 Han Chinese ancestry controls	6p21.32	HLA-DQA2, MHC, HLA-DQB1	rs12525220-A	0.057	7E-14	(ACPA+ cases vs. all controls)	3.015	[NR]	Affymetrix [3441843] (imputed)	N
614	chr6_qbl_hap6	3907563	3907564	rs12525220	24782177	Jiang L	2014-05-01	Arthritis Rheumatol	Novel risk loci for rheumatoid arthritis in Han Chinese and congruence with risk variants in Europeans.	Rheumatoid arthritis	433 Han Chinese ancestry ACPA positive cases, 519 Han Chinese ancestry ACPA negative cases, 943 Han Chinese ancestry controls	1,032 Han Chinese ancestry ACPA positive cases, 1,100 Han Chinese ancestry ACPA negative cases, 2,553 Han Chinese ancestry controls	6p21.32	HLA-DQA2, MHC, HLA-DQB1	rs12525220-A	0.057	3E-12	(all cases vs. all controls)	2.608	[NR]	Affymetrix [3441843] (imputed)	N
614	chr6_qbl_hap6	3907563	3907564	rs12525220	24782177	Jiang L	2014-05-01	Arthritis Rheumatol	Novel risk loci for rheumatoid arthritis in Han Chinese and congruence with risk variants in Europeans.	Rheumatoid arthritis	433 Han Chinese ancestry ACPA positive cases, 519 Han Chinese ancestry ACPA negative cases, 943 Han Chinese ancestry controls	1,032 Han Chinese ancestry ACPA positive cases, 1,100 Han Chinese ancestry ACPA negative cases, 2,553 Han Chinese ancestry controls	6p21.32	HLA-DQA2, MHC, HLA-DQB1	rs12525220-A	0.057	2E-13	(ACPA- cases vs. all controls)	2.869	[NR]	Affymetrix [3441843] (imputed)	N
614	chr6_qbl_hap6	3907616	3907617	rs9275530	26272072	Jiang X	2015-08-13	Rheumatology (Oxford)	An Immunochip-based interaction study of contrasting interaction effects with smoking in ACPA-positive versus ACPA-negative rheumatoid arthritis.	ACPA-positive rheumatoid arthritis (smoking interaction)	340 European ancestry never-smoker cases, 493 European ancestry ever-smoker cases, 746 European ancestry never-smoker controls, 994 European ancestry ever-smoker controls	187 European ancestry never-smoker cases, 421 European ancestry ever-smoker cases, 461 European ancestry never-smoker controls, 447 European ancestry ever-smoker controls	6p21.32	NR	rs9275530-?	NR	2E-6	(adjusted for HLA shared epitope)	1.724138	[1.23-2.94]	Illumina [133648] (imputed)	N
614	chr6_qbl_hap6	3907727	3907728	rs9275532	26272072	Jiang X	2015-08-13	Rheumatology (Oxford)	An Immunochip-based interaction study of contrasting interaction effects with smoking in ACPA-positive versus ACPA-negative rheumatoid arthritis.	ACPA-positive rheumatoid arthritis (smoking interaction)	340 European ancestry never-smoker cases, 493 European ancestry ever-smoker cases, 746 European ancestry never-smoker controls, 994 European ancestry ever-smoker controls	187 European ancestry never-smoker cases, 421 European ancestry ever-smoker cases, 461 European ancestry never-smoker controls, 447 European ancestry ever-smoker controls	6p21.32	NR	rs9275532-?	NR	5E-6	(adjusted for HLA shared epitope)	1.754386	[1.23-3.12]	Illumina [133648] (imputed)	N
614	chr6_qbl_hap6	3908344	3908345	rs3129721	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	IgA nephropathy	1,180 East Asian ancestry cases, 899 East Asian ancestry controls	NA			rs3129721-A	NR	6E-10		0.530478	[0.36-0.7] unit increase	Illumina [NR] (imputed)	N
614	chr6_qbl_hap6	3908344	3908345	rs3129721	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA		NR	rs3129721-?	NR	7E-7		0.0367	[0.022-0.051] unit decrease	Illumina [at least 560000] (imputed)	N
614	chr6_qbl_hap6	3909505	3909506	rs17615220	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	6p21.32	MTCO3P1	rs17615220-G	0.055013	3E-10		0.035653602	[0.025-0.047] unit decrease	Affymetrix [93095623] (imputed)	N
614	chr6_qbl_hap6	3909914	3909915	rs4947344	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	MTCO3P1	rs4947344-T	NR	6E-9		0.0183059	[0.012-0.024] unit decrease	Affymetrix [319769] (imputed)	N
614	chr6_qbl_hap6	3909914	3909915	rs4947344	31375628	Tengvall K	2019-08-02	Proc Natl Acad Sci U S A	Molecular mimicry between Anoctamin 2 and Epstein-Barr virus nuclear antigen 1 associates with multiple sclerosis risk.	Anti-anoctamin 2 antibody levels	11,936 European ancestry individuals	NA	6p21.32	NR	rs4947344-A	NR	1E-9		0.056	[0.032-0.080] unit increase	Illumina [615763]	N
614	chr6_qbl_hap6	3909914	3909915	rs4947344	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p21.32	NR	rs4947344-?	NR	1E-24		0.2606	[0.21-0.31] unit decrease	Illumina [at least 560000] (imputed)	N
614	chr6_qbl_hap6	3909980	3909981	rs9275563	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	MTCO3P1	rs9275563-T	NR	4E-11		0.0202974	[0.014-0.026] unit decrease	Affymetrix [323123] (imputed)	N
614	chr6_qbl_hap6	3909980	3909981	rs9275563	23472185	Mero IL	2013-03-05	PLoS One	Oligoclonal band status in Scandinavian multiple sclerosis patients is associated with specific genetic risk alleles.	Multiple sclerosis (OCB status)	1,367 European ancestry OCB positive cases, 161 European ancestry OCB negative cases, 428 European ancestry controls	NA	6p21.32	HLA-DQA2	rs9275563-?	NR	6E-11	(OCB positive vs. controls)	1.75	[1.47-2.04]	Illumina [495970]	N
614	chr6_qbl_hap6	3910250	3910251	rs6932517	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs6932517-C	0.48	2E-8		0.19	[0.14-0.27]	Illumina [NR] (imputed)	N
614	chr6_qbl_hap6	3910267	3910268	rs9275570	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma and/or BMI	28,862 European ancestry cases, 422,048 European ancestry controls, 6,912 European ancestry individuals	NA	6p21.32	NR	rs9275570-G	NR	2E-19				Affymetrix [~ 8270000] (imputed)	N
614	chr6_qbl_hap6	3910267	3910268	rs9275570	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	6p21.32	NR	rs9275570-?	NR	3E-18				Affymetrix [~ 8270000] (imputed)	N
614	chr6_qbl_hap6	3910492	3910493	rs2894281	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	6p21.32	MTCO3P1	rs2894281-A	0.50383	7E-14		0.018175296	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
614	chr6_qbl_hap6	3910665	3910666	rs4273729	23420232	Duggal P	2013-02-19	Ann Intern Med	Genome-wide association study of spontaneous resolution of hepatitis C virus infection: data from multiple cohorts.	Chronic hepatitis C infection	1,482 chronic HCV cases, 919 spontaneously cleared HCV cases	461 chronic HCV cases, 284 spontaneously cleared HCV cases	6p21.32	HLA	rs4273729-?	NR	5E-17		1.59		Illumina [792721] (imputed)	N
614	chr6_qbl_hap6	3911067	3911068	rs9275572	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs9275572-A	0.48	8E-9		0.17	[0.12-0.24]	Illumina [NR] (imputed)	N
614	chr6_qbl_hap6	3911067	3911068	rs9275572	24871463	Armstrong DL	2014-05-29	Genes Immun	GWAS identifies novel SLE susceptibility genes and explains the association of the HLA region.	Systemic lupus erythematosus	725 European ancestry cases, 2,438 European ancestry controls	NA	6p21.32	HLA-DQA2	rs9275572-A	0.4	5E-16		1.74	[1.64-1.85]	Illumina [NR]	N
614	chr6_qbl_hap6	3911067	3911068	rs9275572	24376798	Miki D	2013-12-20	PLoS One	HLA-DQB1*03 confers susceptibility to chronic hepatitis C in Japanese: a genome-wide association study.	Chronic hepatitis C infection	481 Japanese ancestry cases, 2,963 Japanese ancestry controls	5,737 Japanese ancestry cases, 26,931 Japanese ancestry controls	6p21.32	HLA-DQB1, HLA-DQA1	rs9275572-T	0.359	4E-16		1.27	[1.19-1.33]	Illumina [458207]	N
614	chr6_qbl_hap6	3911067	3911068	rs9275572	21499248	Kumar V	2011-04-17	Nat Genet	Genome-wide association study identifies a susceptibility locus for HCV-induced hepatocellular carcinoma.	Hepatocellular carcinoma	721 Japanese ancestry cases, 2,890 Japanese ancestry controls	673 Japanese ancestry cases, 2,596 Japanese ancestry controls	6p21.32	HLA-DQ, HLA-DR	rs9275572-A	0.36	6E-9		1.3	[1.19-1.42]	Illumina [432703]	N
614	chr6_qbl_hap6	3911067	3911068	rs9275572	20596022	Petukhova L	2010-07-01	Nature	Genome-wide association study in alopecia areata implicates both innate and adaptive immunity.	Alopecia areata	Up to 1,054 European ancestry cases, 3,278 European ancestry controls	NA	6p21.32	HLA-DQA2	rs9275572-G	0.59	1E-35		2.21	[1.98-2.47]	Illumina [463301]	N
614	chr6_qbl_hap6	3911394	3911395	rs9275576	31837886	Kennedy OJ	2019-12-02	Am J Kidney Dis	Coffee Consumption and Kidney Function: A Mendelian Randomization Study.	Coffee consumption (cups per day)	227,666 British ancestry individuals	NA	6p21.32	HLA-DQA2	rs9275576-T	0.146	6E-9		0.048	NR cups per day increase	NR [NR]	N
614	chr6_qbl_hap6	3911452	3911453	rs9275578	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs9275578-T	0.31	1E-9		4.62	[3.51-6.10]	Illumina [NR] (imputed)	N
614	chr6_qbl_hap6	3911527	3911528	rs9275579	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	MTCO3P1	rs9275579-A	NR	2E-11		0.0245816	[0.017-0.032] unit decrease	Affymetrix [323123] (imputed)	N
614	chr6_qbl_hap6	3911530	3911531	rs9275580	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs9275580-G	0.33	3E-8		3.96	[3.03-5.19]	Illumina [NR] (imputed)	N
614	chr6_qbl_hap6	3912138	3912139	rs9275582	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs9275582-T	0.31	1E-9		4.54	[3.45-5.98]	Illumina [NR] (imputed)	N
614	chr6_qbl_hap6	3912138	3912139	rs9275582	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (non-Lofgren's syndrome without extrapulmonary manifestations)	451 Swedish ancestry cases, 2,086 Swedish ancestry controls	NA	6p21.32	HLA-DQB1, HLA-DQA2, HLA-DQA1	rs9275582-G	0.83	2E-11		1.8705574	[1.57-2.24]	Illumina [118177]	N
614	chr6_qbl_hap6	3912190	3912191	rs3135461	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs3135461-A	0.841	2E-39		0.726	[0.68-0.77]	Illumina [11270530] (imputed)	N
614	chr6_qbl_hap6	3912190	3912191	rs3135461	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.32		rs3135461-A	0.773542	8E-36		1.0648913	[1.05-1.08]	Affymetrix, Illumina [9851866] (imputed)	N
614	chr6_qbl_hap6	3912447	3912448	rs9275587	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	XXbac-BPG254F23.7	rs9275587-C	NR	5E-9		0.0184889	[0.012-0.025] unit increase	Affymetrix [323858] (imputed)	N
614	chr6_qbl_hap6	3912447	3912448	rs9275587	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	XXbac-BPG254F23.7	rs9275587-C	NR	2E-8		0.0178049	[0.012-0.024] unit increase	Affymetrix [127266] (imputed)	N
614	chr6_qbl_hap6	3912644	3912645	rs7764819	23284291	Hancock DB	2012-12-20	PLoS Genet	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (smoking interaction)	50,047 European ancestry individuals	NA	6p21.32	HLA-DQA2, HLA-DQB1	rs7764819-T	0.89	4E-9	(FEV1/FVC, Pack-years)	1.0E-4	[-0.00014-0.00025] unit decrease	NR [~ 2500000] (imputed)	N
614	chr6_qbl_hap6	3912644	3912645	rs7764819	23284291	Hancock DB	2012-12-20	PLoS Genet	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (smoking interaction)	50,047 European ancestry individuals	NA	6p21.32	HLA-DQA2, HLA-DQB1	rs7764819-T	0.89	4E-9	(FEV1/FVC, Ever-smoking)	0.001	[-0.04016-0.04216] unit decrease	NR [~ 2500000] (imputed)	N
614	chr6_qbl_hap6	3912688	3912689	rs9275592	28041642	Carmona FD	2016-12-29	Am J Hum Genet	A Genome-wide Association Study Identifies Risk Alleles in Plasminogen and P4HA2 Associated with Giant Cell Arteritis.	Giant cell arteritis	2,134 European ancestry cases, 9,125 European ancestry controls	NA	6p21.32	HLA-DQA1, HLA-DQA2	rs9275592-?	0.11	1E-40		2.08	[1.87-2.32]	Illumina [1844133] (imputed)	N
614	chr6_qbl_hap6	3912996	3912997	rs7765379	25383971	Dunstan SJ	2014-11-10	Nat Genet	Variation at HLA-DRB1 is associated with resistance to enteric fever.	Enteric fever	432 Vietnamese ancestry cases, 2,011 Vietnamese ancestry controls	151 Vietnamese ancestry cases,  668 Vietnamese ancestry controls, 595 Nepalese ancestry cases, 386 Nepalese ancestry controls	6p21.32	HLA-DRB1, HLA-DQB1	rs7765379-A	0.945	2E-13		4.55	[2.94-6.67]	Illumina [709725]	N
614	chr6_qbl_hap6	3912996	3912997	rs7765379	23266558	Yamazaki K	2012-12-21	Gastroenterology	A genome-wide association study identifies 2 susceptibility Loci for Crohn's disease in a Japanese population.	Crohn's disease	372 Japanese ancestry cases,3,389 Japanese ancestry controls	Up to 1,151 Japanese ancestry cases, up to 15,800 Japanese ancestry controls	6p21.32	HLA-DQA2, HLA-DOB, HLA-DQB1, PSMB9, HLA-DRB1, HLA-DQA1	rs7765379-G	NR	9E-59		1.93	[1.78-2.09]	Illumina [4929034] (imputed)	N
614	chr6_qbl_hap6	3912996	3912997	rs7765379	21452313	Freudenberg J	2011-04-01	Arthritis Rheum	Genome-wide association study of rheumatoid arthritis in Koreans: population-specific loci as well as overlap with European susceptibility loci.	Rheumatoid arthritis	801 Korean ancestry cases, 757 Korean ancestry controls	718 Korean ancestry cases, 719 Korean ancestry controls	6p21.32	HLA-DRB1	rs7765379-?		5E-23		2.51	[NR]	Illumina [441398]	N
614	chr6_qbl_hap6	3913229	3913230	rs2858332	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	XXbac-BPG254F23.7	rs2858332-T	NR	7E-18		0.0263625	[0.02-0.032] unit decrease	Affymetrix [323123] (imputed)	N
614	chr6_qbl_hap6	3913229	3913230	rs2858332	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	6p21.32	HLA-DQA2	rs2858332-T	0.50665382076412	7E-7	(G_Clostridium_sensu_stricto_RNT)	0.129415	[0.078-0.181] unit decrease	Illumina [7711310] (imputed)	N
614	chr6_qbl_hap6	3913345	3913346	rs2858331	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs2858331-G	0.33	4E-8		3.82	[2.93-4.97]	Illumina [NR] (imputed)	N
614	chr6_qbl_hap6	3913345	3913346	rs2858331	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Non-Hodgkin's lymphoma	2,400 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs2858331-G	NR	3E-7		1.1625204	NR	Affymetrix [7846216] (imputed)	N
614	chr6_qbl_hap6	3913345	3913346	rs2858331	23146381	Levin AM	2012-11-10	J Allergy Clin Immunol	A meta-analysis of genome-wide association studies for serum total IgE in diverse study populations.	IgE levels	2,469 African American individuals, 259 Latino individuals, 1,564 European ancestry individuals	2,961 African American individuals, 1,477 Latino individuals, 649 European ancestry individuals, 680 Hutterite individuals	6p21.32	HLA-DQA2	rs2858331-G	NR	6E-6				Affymetrix, Illumina [NR] (imputed)	N
614	chr6_qbl_hap6	3913345	3913346	rs2858331	22075330	Granada M	2011-11-08	J Allergy Clin Immunol	A genome-wide association study of plasma total IgE concentrations in the Framingham Heart Study.	IgE levels	6,819 European ancestry individuals	7,809 European ancestry indivduals	6p21.32	HLA-DQA2	rs2858331-G	NR	1E-8		0.04	[NR] unit decrease	Affymetrix [2540223] (imputed)	N
614	chr6_qbl_hap6	3913423	3913424	rs9275595	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	6p21.32	HLA-DQA2	rs9275595-T	0.763	6E-6		0.016	[0.0089-0.0227] kg/m2 increase	Affymetrix, Illumina [2550021]	N
614	chr6_qbl_hap6	3913423	3913424	rs9275595	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	6p21.32	HLA-DQA2	rs9275595-T	0.76	9E-6	(EA)	0.016	[0.009-0.0232] kg/m2 increase	Affymetrix, Illumina [2550021]	N
614	chr6_qbl_hap6	3913551	3913552	rs7454108	29857070	Gao J	2018-05-29	J Invest Dermatol	Association study and fine-mapping major histocompatibility complex analysis of pemphigus vulgaris in a Han Chinese population.	Pemphigus vulgaris	240 Han Chinese ancestry cases, 1,031 Han Chinese ancestry controls	252 Han Chinese ancestry cases, 1,852 Han Chinese ancestry controls	6p21.32	NR	rs7454108-?	NR	3E-12	(conditioned on HLA-DRB1*14:04)	3.25	[NR]	Illumina [802980]	N
614	chr6_qbl_hap6	3913551	3913552	rs7454108	28029757	Merkel PA	2016-12-28	Arthritis Rheumatol	Identification of Functional and Expression Polymorphisms Associated With Risk for Antineutrophil Cytoplasmic Autoantibody-Associated Vasculitis.	Vasculitis associated with antineutrophil cytoplasmic antibody reactive to myeloperoxidase	324 European ancestry cases and 3258 European ancestry controls.	54 European ancestry cases and 1465 European ancestry controls.	6p21.32	HLA-DQA2	rs7454108-C	0.10	5E-25		2.73	2.25-3.24	Affymetrix [at least 333035] (imputed)	N
614	chr6_qbl_hap6	3913551	3913552	rs7454108	26272072	Jiang X	2015-08-13	Rheumatology (Oxford)	An Immunochip-based interaction study of contrasting interaction effects with smoking in ACPA-positive versus ACPA-negative rheumatoid arthritis.	ACPA-positive rheumatoid arthritis (smoking interaction)	340 European ancestry never-smoker cases, 493 European ancestry ever-smoker cases, 746 European ancestry never-smoker controls, 994 European ancestry ever-smoker controls	187 European ancestry never-smoker cases, 421 European ancestry ever-smoker cases, 461 European ancestry never-smoker controls, 447 European ancestry ever-smoker controls	6p21.32	NR	rs7454108-?	NR	2E-6	(adjusted for HLA shared epitope)	1.724138	[1.22-2.94]	Illumina [133648] (imputed)	N
614	chr6_qbl_hap6	3913598	3913599	rs3957146	26272072	Jiang X	2015-08-13	Rheumatology (Oxford)	An Immunochip-based interaction study of contrasting interaction effects with smoking in ACPA-positive versus ACPA-negative rheumatoid arthritis.	ACPA-positive rheumatoid arthritis (smoking interaction)	340 European ancestry never-smoker cases, 493 European ancestry ever-smoker cases, 746 European ancestry never-smoker controls, 994 European ancestry ever-smoker controls	187 European ancestry never-smoker cases, 421 European ancestry ever-smoker cases, 461 European ancestry never-smoker controls, 447 European ancestry ever-smoker controls	6p21.32	NR	rs3957146-?	NR	1E-6	(adjusted for HLA shared epitope)	1.724138	[1.22-2.86]	Illumina [133648] (imputed)	N
614	chr6_qbl_hap6	3913699	3913700	rs9275596	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	IgA nephropathy	1,180 East Asian ancestry cases, 899 East Asian ancestry controls	NA	6p21.32	NR	rs9275596-T	NR	6E-10				Illumina [NR] (imputed)	N
614	chr6_qbl_hap6	3913699	3913700	rs9275596	32912934	Li M	2020-09-10	J Am Soc Nephrol	Genome-Wide Meta-Analysis Identifies Three Novel Susceptibility Loci and Reveals Ethnic Heterogeneity of Genetic Susceptibility for IgA Nephropathy.	IgA nephropathy	2,628 Chinese ancestry cases, 11,563 Chinese ancestry controls	6,879 Han Chinese ancestry cases, 9,019 Han Chinese ancestry controls, 1,039 Italian ancestry cases, 1,289 Italian ancestry controls	6p21.32	DQB1.DRB1	rs9275596-T	0.8466025166479287	2E-13	(East Asian)	1.4409347	[1.3070519220741-1.58853123859263]	NR [3611808] (imputed)	N
614	chr6_qbl_hap6	3913699	3913700	rs9275596	25710614	Hong X	2015-02-24	Nat Commun	Genome-wide association study identifies peanut allergy-specific loci and evidence of epigenetic mediation in US children.	Peanut allergy	316 European ancestry child cases, 144 European ancestry non-allergic non-sensitized normal child controls, 589 European ancestry uncertain phenotype child controls, 1,148 European ancestry uncertain phenotype adult controls	62 European ancestry child cases, 69 European ancestry child controls, 24 child cases, 58 child controls	6p21.32	HLA-DRB1, HLA-DQA1, HLA-DQB1, HLA-DQA2	rs9275596-C	0.35	6E-11	(EA)	1.7	[1.40-2.10]	Illumina [6459842] (imputed)	N
614	chr6_qbl_hap6	3913699	3913700	rs9275596	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	6p21.32	HLA-DQB1, HLA-DQA1, HLA-DRB1	rs9275596-T	0.8	1E-19	(East Asian)	1.69	[NR]	Illumina [> 1000000] (imputed)	N
614	chr6_qbl_hap6	3913699	3913700	rs9275596	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	6p21.32	HLA-DQB1, HLA-DQA1, HLA-DRB1	rs9275596-T	0.65	3E-31		1.44	[NR]	Illumina [> 1000000] (imputed)	N
614	chr6_qbl_hap6	3913699	3913700	rs9275596	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	6p21.32	HLA-DQB1, HLA-DQA1, HLA-DRB1	rs9275596-T	0.65	2E-15	(EA)	1.35		Illumina [> 1000000] (imputed)	N
614	chr6_qbl_hap6	3913699	3913700	rs9275596	21399633	Gharavi AG	2011-03-13	Nat Genet	Genome-wide association study identifies susceptibility loci for IgA nephropathy.	Nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls	712 Han Chinese ancestry cases, 748 Han Chinese ancestry controls, 1,238 European ancestry cases, 1,172 European ancestry controls	6p21.32	HLA-DQB1, HLA-DRB1, HLA-DQA1	rs9275596-?	0.73 (EA)	2E-26		1.59	[NR]	Illumina [498322]	N
614	chr6_qbl_hap6	3913737	3913738	rs6935723	25217962	Heap GA	2014-09-14	Nat Genet	HLA-DQA1-HLA-DRB1 variants confer susceptibility to pancreatitis induced by thiopurine immunosuppressants.	Response to thiopurine immunosuppressants in inflammatory bowel disease (pancreatitis) (azathioprine and mercaptopurine)	172 European ancestry cases, 2,035 European ancestry controls	78 European ancestry cases, 472 controls	6p21.32	HLA region	rs6935723-C	0.27	1E-21		2.46	[2.04-2.98]	Affymetrix, Illumina [2819700] (imputed)	N
614	chr6_qbl_hap6	3913744	3913745	rs3104402	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	XXbac-BPG254F23.7	rs3104402-T	NR	3E-10		0.035252	[0.024-0.046] unit increase	Affymetrix [323123] (imputed)	N
614	chr6_qbl_hap6	3913744	3913745	rs3104402	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	6p21.32	NR	rs3104402-?	NR	1E-8		0.1164	[0.076-0.157] unit decrease	Illumina [at least 560000] (imputed)	N
614	chr6_qbl_hap6	3913744	3913745	rs3104402	22658931	Pajewski NM	2012-05-30	Vaccine	A genome-wide association study of host genetic determinants of the antibody response to Anthrax Vaccine Adsorbed.	Immune response to anthrax vaccine	726 European ancestry individuals	NA	6p21.32	HLA-DRB1, HLA-DQA1	rs3104402-A	NR	6E-6		0.165	[0.094-0.236] unit decrease	Affymetrix [736996]	N
614	chr6_qbl_hap6	3914060	3914061	rs3998158	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs3998158-C	0.3	4E-9		4.39	[3.33-5.79]	Illumina [NR] (imputed)	N
614	chr6_qbl_hap6	3914087	3914088	rs3998159	26272072	Jiang X	2015-08-13	Rheumatology (Oxford)	An Immunochip-based interaction study of contrasting interaction effects with smoking in ACPA-positive versus ACPA-negative rheumatoid arthritis.	ACPA-positive rheumatoid arthritis (smoking interaction)	340 European ancestry never-smoker cases, 493 European ancestry ever-smoker cases, 746 European ancestry never-smoker controls, 994 European ancestry ever-smoker controls	187 European ancestry never-smoker cases, 421 European ancestry ever-smoker cases, 461 European ancestry never-smoker controls, 447 European ancestry ever-smoker controls	6p21.32	NR	rs3998159-?	NR	2E-6	(adjusted for HLA shared epitope)	1.724138	[1.22-2.94]	Illumina [133648] (imputed)	N
614	chr6_qbl_hap6	3914203	3914204	rs3957147	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	XXbac-BPG254F23.7	rs3957147-T	NR	5E-9		0.0232882	[0.015-0.031] unit increase	Affymetrix [323123] (imputed)	N
614	chr6_qbl_hap6	3914203	3914204	rs3957147	32534018	Liu X	2020-06-10	Brain Behav Immun	Genetic factors underlying the bidirectional relationship between autoimmune and mental disorders - findings from a Danish population-based study.	Autoimmune traits	1,383 Danish ancestry cases, 62,656 Danish ancestry controls	NA	6p21.32	NR	rs3957147-T	0.21	9E-9		1.34	[1.21-1.48]	NR [7721839] (imputed)	N
614	chr6_qbl_hap6	3914242	3914243	rs3104404	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	150,545 East Asian ancestry individuals	NA	6p21.32		rs3104404-A	0.356773	3E-10		0.0227	[0.016-0.03] unit decrease	Illumina [13478866] (imputed)	N
614	chr6_qbl_hap6	3914267	3914268	rs35122968	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p21.32	HLA-DQA2	rs35122968-C	0.043	4E-11		0.2	[0.14-0.26] unit increase	Affymetrix, Illumina [7374092] (imputed)	N
614	chr6_qbl_hap6	3914275	3914276	rs3129731	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	6p21.32		rs3129731-G	0.795841844	3E-12		0.07240271	[0.052-0.093] unit decrease	Illumina [13134967] (imputed)	N
614	chr6_qbl_hap6	3914296	3914297	rs2894381	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	6p21.32		rs2894381-A	0.422035	4E-8		0.0201838	[0.013-0.027] unit increase	Illumina [13476266] (imputed)	N
614	chr6_qbl_hap6	3914296	3914297	rs2894381	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	121,047 East Asian ancestry individuals	NA	6p21.32	NR	rs2894381-G	0.566792	3E-10		0.026702	[0.018-0.035] SD units decrease	Affymetrix, Illumina [16286195] (imputed)	N
614	chr6_qbl_hap6	3914296	3914297	rs2894381	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p21.32		rs2894381-?	NR	6E-9		0.0142926	[0.0092-0.0194] unit decrease	Affymetrix [20259828] (imputed)	N
614	chr6_qbl_hap6	3914462	3914463	rs3997848	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.32		rs3997848-T	0.676	4E-17				Affymetrix [10369434] (imputed)	N
614	chr6_qbl_hap6	3914462	3914463	rs3997848	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	XXbac-BPG254F23.7	rs3997848-G	NR	2E-8		0.0168279	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
614	chr6_qbl_hap6	3914462	3914463	rs3997848	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	XXbac-BPG254F23.7	rs3997848-G	NR	1E-8		0.0171568	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
614	chr6_qbl_hap6	3914462	3914463	rs3997848	33545615	Hsu LA	2021-01-19	Atherosclerosis	Circulating chemerin levels are determined through circulating platelet counts in nondiabetic Taiwanese people: A bidirectional Mendelian randomization study.	Chemerin levels	3,887 Han Chinese ancestry individuals	NA	6p21.32	HLA	rs3997848-?	NR	5E-8		0.017	[0.012-0.022] unit increase (adjusted)	Affymetrix [610203]	N
614	chr6_qbl_hap6	3914462	3914463	rs3997848	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p21.32	HLA-DQA2	rs3997848-G	0.117	2E-14		0.135	[0.1-0.17] unit increase	Affymetrix, Illumina [7374092] (imputed)	N
614	chr6_qbl_hap6	3914470	3914471	rs3997849	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p21.32	NR	rs3997849-T	0.262	3E-6	(IFNAR2_of_CD8p_T)			Illumina [5084123] (imputed)	N
614	chr6_qbl_hap6	3914497	3914498	rs9275599	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs9275599-T	0.032	2E-16	(conditional)	1.585	[1.48-1.69]	Illumina [11270530] (imputed)	N
614	chr6_qbl_hap6	3914658	3914659	rs113721192	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.32	Intergenic	rs113721192-?		1E-6		1.06	[1.03-1.08]	Illumina [7645193] (imputed)	N
614	chr6_qbl_hap6	3914658	3914659	rs113721192	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.32	Intergenic	rs113721192-?		3E-7		1.76	[1.42-2.18]	Illumina [7645193] (imputed)	N
614	chr6_qbl_hap6	3914732	3914733	rs9275601	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.32		rs9275601-C	0.559	2E-19				Affymetrix [10369434] (imputed)	N
614	chr6_qbl_hap6	3914732	3914733	rs9275601	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.32		rs9275601-C	0.559	1E-20				Affymetrix [10369434] (imputed)	N
614	chr6_qbl_hap6	3914880	3914881	rs9275602	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	XXbac-BPG254F23.7	rs9275602-A	NR	1E-8		0.0219542	[0.014-0.029] unit increase	Affymetrix [323123] (imputed)	N
614	chr6_qbl_hap6	3914880	3914881	rs9275602	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs9275602-?	NR	8E-10				Affymetrix [~ 8270000] (imputed)	N
614	chr6_qbl_hap6	3914880	3914881	rs9275602	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	6p21.32	NR	rs9275602-?	NR	5E-29	(conditional)			Affymetrix [15688218] (imputed)	N
614	chr6_qbl_hap6	3915632	3915633	rs200025476	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.32	NR	rs200025476-T	0.011	3E-9		0.507765	[0.34-0.67] unit increase	Affymetrix [up to 8900000] (imputed)	N
614	chr6_qbl_hap6	3915632	3915633	rs200025476	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.32	NR	rs200025476-T	0.011	2E-6	(women)	0.688868	[0.41-0.97] unit increase	Affymetrix [up to 8900000] (imputed)	N
614	chr6_qbl_hap6	3915748	3915749	rs9391746	33961016	Moksnes MR	2021-05-07	Hum Mol Genet	Genome-wide association study of cardiac troponin I in the general population.	High-sensitivity cardiac troponin I concentration	48,115 European ancestry individuals	NA	6p21.32		rs9391746-T	0.0718	1E-8		0.08	[0.06-0.1] unit increase	Illumina [26711992] (imputed)	N
614	chr6_qbl_hap6	3916412	3916413	rs5024431	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6p21.32		rs5024431-?	NR	6E-17		0.897905	[0.87-0.92]	NR [685523]	N
614	chr6_qbl_hap6	3917005	3917006	rs9275642	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Skin cancer	25,928 European ancestry cases, 466,275 European ancestry controls, 154 East Asian ancestry cases, 178,572 East Asian ancestry controls	NA	6p21.32		rs9275642-T	NR	4E-21		0.1097	[0.087-0.132] unit decrease	Affymetrix, Illumina [25845421] (imputed)	N
614	chr6_qbl_hap6	3917005	3917006	rs9275642	27539887	Chahal HS	2016-08-19	Nat Commun	Genome-wide association study identifies 14 novel risk alleles associated with basal cell carcinoma.	Basal cell carcinoma	12.945 European ancestry cases, 274,252 European ancestry controls	4,242 European ancestry cases, 12,802 European ancestry controls	6p21.32	HLA-DQA2	rs9275642-C	0.79	2E-12		1.1235955	[NR]	Illumina [at least 560000] (imputed)	N
614	chr6_qbl_hap6	3917268	3917269	rs41288885	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.32	XXbac-BPG254F23.7	rs41288885-G	0.058676	5E-9		0.028841805	[0.019-0.039] unit increase	Affymetrix [93095623] (imputed)	N
614	chr6_qbl_hap6	3917268	3917269	rs41288885	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.32	NR	rs41288885-?	NR	9E-10				Affymetrix [~ 8270000] (imputed)	N
614	chr6_qbl_hap6	3917450	3917451	rs3998154	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.32		rs3998154-G	0.585	9E-27				Affymetrix [10369434] (imputed)	N
614	chr6_qbl_hap6	3917450	3917451	rs3998154	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p21.32		rs3998154-G	0.585	1E-22				Affymetrix [10369434] (imputed)	N
614	chr6_qbl_hap6	3917620	3917621	rs3916765	34716350	Lin WY	2021-10-29	Nat Commun	Genome-wide association study identifies susceptibility loci for acute myeloid leukemia.	Acute myeloid leukemia (normal cytogenetics)	3,041 European ancestry cases, 6,760 European ancestry controls	977 European ancestry cases, 3,728 European ancestry controls	6p21.32		rs3916765-G	NR	2E-10		1.72	[1.46-2.03]	Affymetrix, Illumina [6496414] (imputed)	N
614	chr6_qbl_hap6	3917620	3917621	rs3916765	22693455	Perry JR	2012-05-31	PLoS Genet	Stratifying type 2 diabetes cases by BMI identifies genetic risk variants in LAMA1 and enrichment for risk variants in lean compared to obese cases.	Type 2 diabetes	2,112 lean type 2 diabetes cases, 4,123 obese type 2 diabetes cases, 54,412 controls	2,881 lean type 2 diabetes cases, 8,702 obese type 2 diabetes cases, 18,957 controls	6p21.32	HLA-DQA2	rs3916765-A	0.12	1E-6	(Lean)	1.21	[1.12-1.31]	NR [NR]	N
614	chr6_qbl_hap6	3918699	3918700	rs9275667	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	XXbac-BPG254F23.7	rs9275667-T	NR	1E-15		0.0312755	[0.024-0.039] unit decrease	Affymetrix [323858] (imputed)	N
614	chr6_qbl_hap6	3918699	3918700	rs9275667	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	XXbac-BPG254F23.7	rs9275667-T	NR	6E-15		0.0304364	[0.023-0.038] unit decrease	Affymetrix [127266] (imputed)	N
614	chr6_qbl_hap6	3920025	3920026	rs9275698	21804548	Hirota T	2011-07-31	Nat Genet	Genome-wide association study identifies three new susceptibility loci for adult asthma in the Japanese population.	Asthma	1,532 Japanese ancestry cases, 3,304 Japanese ancestry controls	5,639 Japanese ancestry cases, 24,608 Japanese ancestry controls	6p21.32	HLA-DQA2	rs9275698-T	0.79	5E-12		1.18	[1.12-1.24]	Illumina [458847]	N
614	chr6_qbl_hap6	3920272	3920273	rs9275710	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	XXbac-BPG254F23.7	rs9275710-T	NR	1E-9		0.0190333	[0.013-0.025] unit decrease	Affymetrix [323858] (imputed)	N
614	chr6_qbl_hap6	3920272	3920273	rs9275710	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	XXbac-BPG254F23.7	rs9275710-T	NR	9E-9		0.018054	[0.012-0.024] unit decrease	Affymetrix [127266] (imputed)	N
614	chr6_qbl_hap6	3921949	3921950	rs117522574	32771030	Tangtanatakul P	2020-08-08	Arthritis Res Ther	Meta-analysis of genome-wide association study identifies FBN2 as a novel locus associated with systemic lupus erythematosus in Thai population.	Systemic lupus erythematosus	487 Thai cases, 1,606 Thai controls	405 Thai cases, 1,590 Thai controls	6p21.32	XXbac-BPG254F23.7, HLA-DQB3	rs117522574-G	0.19	3E-8		1.5082	[NR]	Illumina [421909] (imputed)	N
614	chr6_qbl_hap6	3923094	3923095	rs9275844	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	XXbac-BPG254F23.7	rs9275844-T	NR	2E-8		0.0217782	[0.014-0.029] unit increase	Affymetrix [323123] (imputed)	N
614	chr6_qbl_hap6	3925318	3925319	rs2858892	30657218	Park SY	2019-01-18	Clin Exp Allergy	Longitudinal analysis to better characterize Asthma-COPD Overlap Syndrome (ACOS): Findings from an adult asthma cohort in Korea (COREA).	Adult asthma	731 Korean ancestry cases, 5,915 Korean ancestry controls	NA	6p21.32	NR	rs2858892-?	NR	4E-7		1.34		NR [267429]	N
614	chr6_qbl_hap6	3926081	3926082	rs114803904	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs114803904-C	0.474	1E-24	(cAMP-specific 3',5'-cyclic phosphodiesterase 4D, PDE4D.5255.22.3)	0.29	[0.23-0.35] unit increase	Affymetrix [10572788] (imputed)	N
614	chr6_qbl_hap6	3927151	3927152	rs73732611	33558538	Gebresilase T	2021-02-08	Sci Rep	Replication of HLA class II locus association with susceptibility to podoconiosis in three Ethiopian ethnic groups.	Podoconiosis	1,137 Ethiopian ancestry cases, 1,152 Ethiopian ancestry controls	NA	6p21.32	HLA-DQB3	rs73732611-C	0.07	5E-9				Illumina [2201695]	N
614	chr6_qbl_hap6	3929860	3929861	rs2859113	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	NR	rs2859113-C	0.378328302013423	6E-8	(IGP59)	0.1817	[0.12-0.25] unit decrease	Illumina [~ 2500000] (imputed)	N
614	chr6_qbl_hap6	3932155	3932156	rs2858884	20711174	Hor H	2010-08-15	Nat Genet	Genome-wide association study identifies new HLA class II haplotypes strongly protective against narcolepsy.	Narcolepsy	562 European ancestry cases, 702 European ancestry controls	370 cases, 495 controls	6p21.32	HLA-DQA2	rs2858884-A	0.81	3E-8		1.79	[1.45-2.17]	Affymetrix [392949]	N
615	chr6_qbl_hap6	3933288	3933289	rs9276244	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	IgA levels	16,883 Icelandic ancestry individuals	2,151 Swedish ancestry individuals	6p21.32	HLA-DQA2	rs9276244-G	0.328	3E-14		0.09	NR SD units increase	Illumina [21568490] (imputed)	N
615	chr6_qbl_hap6	3934042	3934043	rs9276263	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p21.32	NR	rs9276263-?	NR	7E-16		0.1146	[0.087-0.142] unit increase	Illumina [at least 560000] (imputed)	N
615	chr6_qbl_hap6	3939375	3939376	rs9276370	32004448	Savage SA	2020-01-30	Am J Hum Genet	Genome-wide Association Study Identifies HLA-DPB1 as a Significant Risk Factor for Severe Aplastic Anemia.	Severe aplastic anemia	359 European ancestry cases, 1,396 European ancestry controls	175 European ancestry cases, 1,059 European ancestry controls	6p21.32	HLA-DQA2, HLA-DQB2	rs9276370-?	NR	5E-7		1.41	[1.23-1.62]	Illumina [688067]	N
615	chr6_qbl_hap6	3939375	3939376	rs9276370	24940741	Chang SW	2014-06-18	PLoS One	A genome-wide association study on chronic HBV infection and its clinical progression in male Han-Taiwanese.	Chronic hepatitis B infection	321 Chinese ancestry cases, 304 Chinese ancestry controls	1,302 Chinese ancestry cases, 761 Chinese ancestry controls	6p21.32	HLA-DQA2	rs9276370-T	0.076	2E-12		1.95	[1.62-2.34]	Illumina [456262]	N
615	chr6_qbl_hap6	3940447	3940447	rs11426605	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs11426605-T	0.966	3E-15	(conditional)	0.648	[0.54-0.76]	Illumina [11270530] (imputed)	N
615	chr6_qbl_hap6	3942304	3942305	rs9461806	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.32		rs9461806-C	0.595	2E-17				Affymetrix [10369434] (imputed)	N
615	chr6_qbl_hap6	3942304	3942305	rs9461806	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.32		rs9461806-C	0.595	1E-25				Affymetrix [10369434] (imputed)	N
615	chr6_qbl_hap6	3942490	3942491	rs115018313	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	6p21.32		rs115018313-C	NR	7E-33		0.284	[0.24-0.33] unit increase	Affymetrix, Illumina [25845091] (imputed)	N
615	chr6_qbl_hap6	3942937	3942938	rs9276423	26379185	Garcia-Etxebarria K	2015-09-17	PLoS One	No Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity.	Mild influenza (H1N1) infection	107 European ancestry mild cases, 549 European ancestry population controls	NA	6p21.32	HLA-DQA2	rs9276423-?	0.0	3E-8				Affymetrix [547296]	N
615	chr6_qbl_hap6	3943942	3943943	rs9276427	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first birth	542,901 European ancestry individuals	NA	6p21.32	HLA-DQA2	rs9276427-T	0.5217	3E-8		0.0532	[0.034-0.072] unit increase	NR [9744772] (imputed)	N
615	chr6_qbl_hap6	3943942	3943943	rs9276427	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQA2	rs9276427-C	NR	6E-9		0.0164173	[0.011-0.022] unit increase	Affymetrix [319769] (imputed)	N
615	chr6_qbl_hap6	3943942	3943943	rs9276427	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DQA2	rs9276427-C	NR	1E-8		0.0160937	[0.011-0.022] unit increase	Affymetrix [319769] (imputed)	N
615	chr6_qbl_hap6	3943942	3943943	rs9276427	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DQA2	rs9276427-C	NR	3E-8		0.0158296	[0.01-0.021] unit increase	Affymetrix [321169] (imputed)	N
615	chr6_qbl_hap6	3943942	3943943	rs9276427	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.32		rs9276427-C	0.49390500000000004	2E-10		1.0275491	[1.02-1.03]	Affymetrix, Illumina [9851866] (imputed)	N
615	chr6_qbl_hap6	3944094	3944095	rs41288889	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs41288889-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
615	chr6_qbl_hap6	3944759	3944760	rs9276434	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	6p21.32	HLA-DQA2	rs9276434-T	NR	4E-17		0.0479129	[0.037-0.059] unit decrease	Illumina [13520550] (imputed)	N
615	chr6_qbl_hap6	3945960	3945961	rs9276435	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cervical cancer	6,563 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs9276435-C	NR	2E-10		1.1631	NR	Affymetrix [7846216] (imputed)	N
615	chr6_qbl_hap6	3953536	3953537	rs2077046	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQB2	rs2077046-C	NR	2E-8		0.0159433	[0.01-0.021] unit increase	Affymetrix [319769] (imputed)	N
615	chr6_qbl_hap6	3957314	3957315	rs2301271	21408207	Chung SA	2011-03-03	PLoS Genet	Differential genetic associations for systemic lupus erythematosus based on anti-dsDNA autoantibody production.	Systemic lupus erythematosus	811 anti-dsDNA positive European ancestry cases, 906 anti-dsDNA negative European ancestry cases, 4,813 European ancestry controls	NA	6p21.32	HLA-DQA2	rs2301271-T	0.40	2E-12	(anti-dsDNA -)	1.47	[1.32-1.63]	Illumina [421318] (imputed)	N
615	chr6_qbl_hap6	3958397	3958398	rs9276578	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p21.32	HLA-DQB2	rs9276578-G	NR	2E-9		0.0231702	[0.016-0.031] unit decrease	Affymetrix [323858] (imputed)	N
615	chr6_qbl_hap6	3958926	3958927	rs1049110	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	HLA-DQA2, HLA-DQB2	rs1049110-C	0.346381764494382	2E-8	(IGP42)	0.1909	[0.12-0.26] unit increase	Illumina [~ 2500000] (imputed)	N
615	chr6_qbl_hap6	3958926	3958927	rs1049110	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	HLA-DQA2, HLA-DQB2	rs1049110-C	0.34601888034188	4E-8	(IGP2)	0.1853	[0.12-0.25] unit increase	Illumina [~ 2500000] (imputed)	N
615	chr6_qbl_hap6	3959332	3959333	rs9276580	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.32		rs9276580-T	0.46	8E-18				Affymetrix [10369434] (imputed)	N
615	chr6_qbl_hap6	3959448	3959449	rs7753017	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs7753017-A	0.237	5E-43		0.745	[0.7-0.79]	Illumina [11270530] (imputed)	N
615	chr6_qbl_hap6	3960765	3960766	rs2395258	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	6p21.32	HLA-DQB2	rs2395258-T	NR	6E-9		0.0205128	[0.014-0.027] unit increase	Illumina [13519193] (imputed)	N
615	chr6_qbl_hap6	3961181	3961182	rs2006163	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.32		rs2006163-A	0.462	4E-35				Affymetrix [10369434] (imputed)	N
615	chr6_qbl_hap6	3961856	3961857	rs2008560	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQB2	rs2008560-G	NR	3E-12		0.0196979	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
615	chr6_qbl_hap6	3961856	3961857	rs2008560	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DQB2	rs2008560-G	NR	2E-11		0.0189439	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
615	chr6_qbl_hap6	3961856	3961857	rs2008560	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DQB2	rs2008560-G	NR	1E-10		0.0183237	[0.013-0.024] unit increase	Affymetrix [321169] (imputed)	N
615	chr6_qbl_hap6	3961856	3961857	rs2008560	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling worry	372,869 European ancestry individuals	NA	6p21.32	C4B	rs2008560-C	0.496591	3E-8		5.56	unit decrease	NR [10847151] (imputed)	N
615	chr6_qbl_hap6	3962134	3962135	rs7453920	27244555	Li Y	2016-05-31	Nat Commun	Genome-wide association study identifies 8p21.3 associated with persistent hepatitis B virus infection among Chinese.	Persistent hepatitis B virus infection	1,251 Chinese ancestry persistently infected cases, 1,057 Chinese ancestry spontaneously recovered controls	3,905 Chinese ancestry persistently infected cases, 3,356 Chinese ancestry spontaneously recovered controls	6p21.32	HLA-DQB2	rs7453920-A		6E-6		2.0	[1.47-2.78]	Affymetrix, Illumina [up to 4494311] (imputed)	N
615	chr6_qbl_hap6	3962134	3962135	rs7453920	25802187	Jiang DK	2015-04-28	Hepatology	Genetic variants in five novel loci including CFB and CD40 predispose to chronic hepatitis B.	Chronic hepatitis B infection	2,514 Chinese ancestry cases, 1,130 Chinese ancestry controls	6,600 Chinese ancestry cases, 8,127 Chinese ancestry controls	6p21.32	HLA-DQB2	rs7453920-A	0.88	1E-60		2.0	[1.82-2.17]	Illumina [3680900] (imputed)	N
615	chr6_qbl_hap6	3962134	3962135	rs7453920	24940741	Chang SW	2014-06-18	PLoS One	A genome-wide association study on chronic HBV infection and its clinical progression in male Han-Taiwanese.	Chronic hepatitis B infection	321 Chinese ancestry cases, 304 Chinese ancestry controls	1,302 Chinese ancestry cases, 761 Chinese ancestry controls	6p21.32	HLA-DQB2	rs7453920-G	0.051	7E-15		2.31	[1.87-2.85]	Illumina [456262]	N
615	chr6_qbl_hap6	3962134	3962135	rs7453920	24162738	Hu Z	2013-10-27	Nat Genet	New loci associated with chronic hepatitis B virus infection in Han Chinese.	Hepatitis B	951 Han Chinese ancestry HBV carrier cases, 937 Han Chinese ancestry HBV cleared controls	4,230 Chinese ancestry HBV carrier cases, 3,051 Chinese ancestry HBV cleared controls, 2,622 Chinese ancestry controls	6p21.32	HLA-DQB2	rs7453920-G	0.87	5E-37		1.8868	[1.69-2.08]	Illumina [490610]	N
615	chr6_qbl_hap6	3962134	3962135	rs7453920	23760081	Kim YJ	2013-06-10	Hum Mol Genet	A genome-wide association study identified new variants associated with the risk of chronic hepatitis B.	Chronic hepatitis B infection	400 Korean ancestry cases, 1,000 Korean ancestry controls	971 Korean ancestry cases, 1,938 Korean ancestry controls	6p21.32	HLA-DQ	rs7453920-?	NR	7E-26		2.0	[1.72-2.27]	Illumina [719265]	N
615	chr6_qbl_hap6	3962134	3962135	rs7453920	23349640	Vijai J	2013-01-17	PLoS Genet	Susceptibility loci associated with specific and shared subtypes of lymphoid malignancies.	Lymphoma	275 Follicular non-Hodgkin's Lymphoma cases, 269 diffuse large B-cell non-Hodgkin's Lymphoma cases, 198 other non-Hodgkin's Lymphoma cases, 202 Hodgkin's Lymphoma cases, 4,044 controls	202 European ancestry Follicular non-Hodgkin's Lymphoma cases, 367 European ancestry diffuse large B-cell non-Hodgkin's Lymphoma cases, 577 European ancestry other non-Hodgkin's Lymphoma cases, 99 European ancestry Hodgkin's Lymphoma cases, 2,596 European ancestry controls	6p21.32	HLA-DQB2	rs7453920-?	NR	5E-6	(LYM)	1.19	[1.11-1.3]	Affymetrix [530583]	N
615	chr6_qbl_hap6	3962134	3962135	rs7453920	21750111	Mbarek H	2011-07-12	Hum Mol Genet	A genome-wide association study of chronic hepatitis B identified novel risk locus in a Japanese population.	Hepatitis B	458 Japanese ancestry cases, 2,056 Japanese ancestry controls	2,209 Japanese ancestry cases, 4,440 Japanese ancestry controls	6p21.32	HAL-DQB2	rs7453920-G	0.83	6E-28		1.81	[1.62-2.01]	Illumina [423627]	N
615	chr6_qbl_hap6	3962208	3962209	rs2051549	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DQB2	rs2051549-G	NR	4E-9		0.0181006	[0.012-0.024] unit increase	Affymetrix [323123] (imputed)	N
615	chr6_qbl_hap6	3962208	3962209	rs2051549	23053960	Lee YH	2012-10-07	Mol Biol Rep	Genome-wide pathway analysis of genome-wide association studies on systemic lupus erythematosus and rheumatoid arthritis.	Systemic lupus erythematosus	1,527 European ancestry cases, 3,421 European ancestry controls,	NA	6p21.32	HLA-DQA2	rs2051549-?	NR	3E-22				Illumina [737984]	N
615	chr6_qbl_hap6	3963062	3963063	rs2071550	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	6p21.32	SLC44A4, EHMT2, HLA-DQB2, STK19, CYP21A2, TNXB	rs2071550-?	NR	7E-6				Affymetrix, Illumina [18800000] (imputed)	N
615	chr6_qbl_hap6	3963062	3963063	rs2071550	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	6p21.32	SLC44A4, EHMT2, HLA-DQB2, STK19, CYP21A2, TNXB	rs2071550-?	NR	1E-9	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
615	chr6_qbl_hap6	3963062	3963063	rs2071550	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	6p21.32	SLC44A4, EHMT2, HLA-DQB2, STK19, CYP21A2, TNXB	rs2071550-?	NR	5E-8	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
615	chr6_qbl_hap6	3965750	3965751	rs33998906	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQB2	rs33998906-T	NR	5E-8		0.0304833	[0.02-0.041] unit increase	Affymetrix [319769] (imputed)	N
615	chr6_qbl_hap6	3965750	3965751	rs33998906	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DQB2	rs33998906-T	NR	2E-8		0.0314602	[0.021-0.042] unit increase	Affymetrix [319769] (imputed)	N
615	chr6_qbl_hap6	3966426	3966427	rs9276601	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQB2	rs9276601-G	NR	4E-8		0.0202269	[0.013-0.027] unit decrease	Affymetrix [319769] (imputed)	N
615	chr6_qbl_hap6	3968122	3968123	rs9296042	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Scarlet fever	6,812 European ancestry cases, 113,837 European ancestry controls	NA	6p21.32	NR	rs9296042-?	NR	3E-6		0.0873	[0.051-0.124] unit decrease	Illumina [at least 560000] (imputed)	N
615	chr6_qbl_hap6	3968812	3968813	rs9276606	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DQB2	rs9276606-T	NR	1E-9		0.021091	[0.014-0.028] unit decrease	Affymetrix [323858] (imputed)	N
615	chr6_qbl_hap6	3968812	3968813	rs9276606	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	HLA-DQB2	rs9276606-T	NR	2E-9		0.0208414	[0.014-0.028] unit decrease	Affymetrix [127266] (imputed)	N
615	chr6_qbl_hap6	3968812	3968813	rs9276606	23028341	Yang X	2012-09-13	PLoS Genet	Genome-wide association study for serum complement C3 and C4 levels in healthy Chinese subjects.	Complement C3 and C4 levels	1,999 Han Chinese ancestry male individuals	1,496 Han Chinese ancestry male individuals	6p21.32	HLA-DQB	rs9276606-T	0.15	3E-22	(Serum level of C4)	0.09	[0.070-0.110] g/L decrease	Illumina [1940245] (imputed)	N
615	chr6_qbl_hap6	3972524	3972525	rs2857212	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.32		rs2857212-A	0.635	2E-33				Affymetrix [10369434] (imputed)	N
615	chr6_qbl_hap6	3972524	3972525	rs2857212	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.32		rs2857212-A	0.635	2E-31				Affymetrix [10369434] (imputed)	N
615	chr6_qbl_hap6	3972524	3972525	rs2857212	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.32		rs2857212-A	0.635	2E-57				Affymetrix [10369434] (imputed)	N
615	chr6_qbl_hap6	3973119	3973120	rs2621419	33235445	Lee YJ	2020-11-17	Int J Chron Obstruct Pulmon Dis	A Genome-Wide Association Study in Early COPD: Identification of One Major Susceptibility Loci.	Early chronic obstructive pulmonary disease in never smokers	38 Korean ancestry cases, 1,778 Korean ancestry controls	NA	6p21.32	HLA-DQB2	rs2621419-?	NR	9E-6		0.68	NR	Affymetrix [345072]	N
615	chr6_qbl_hap6	3973981	3973982	rs2621416	23349640	Vijai J	2013-01-17	PLoS Genet	Susceptibility loci associated with specific and shared subtypes of lymphoid malignancies.	Lymphoma	275 Follicular non-Hodgkin's Lymphoma cases, 269 diffuse large B-cell non-Hodgkin's Lymphoma cases, 198 other non-Hodgkin's Lymphoma cases, 202 Hodgkin's Lymphoma cases, 4,044 controls	202 European ancestry Follicular non-Hodgkin's Lymphoma cases, 367 European ancestry diffuse large B-cell non-Hodgkin's Lymphoma cases, 577 European ancestry other non-Hodgkin's Lymphoma cases, 99 European ancestry Hodgkin's Lymphoma cases, 2,596 European ancestry controls	6p21.32	HLA-DQB2, TAP2	rs2621416-G	NR	2E-9	(FL)	1.57	[NR]	Affymetrix [530583]	N
615	chr6_qbl_hap6	3974208	3974209	rs9276610	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DQB2	rs9276610-A	NR	1E-9		0.0272626	[0.018-0.036] unit increase	Affymetrix [323123] (imputed)	N
615	chr6_qbl_hap6	3974940	3974941	rs12663317	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	6p21.32	NR	rs12663317-?	NR	6E-12				Affymetrix [~ 8270000] (imputed)	N
615	chr6_qbl_hap6	3976460	3976461	rs2857204	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	6p21.32	intergenic	rs2857204-T	0.327	9E-19		0.03378215	[0.026-0.041] unit decrease	Affymetrix [~ 2500000] (imputed)	N
615	chr6_qbl_hap6	3976553	3976554	rs28724893	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQB2	rs28724893-T	NR	2E-8		0.0157586	[0.01-0.021] unit decrease	Affymetrix [319769] (imputed)	N
615	chr6_qbl_hap6	3976553	3976554	rs28724893	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DQB2	rs28724893-T	NR	4E-11		0.0202278	[0.014-0.026] unit increase	Affymetrix [323123] (imputed)	N
615	chr6_qbl_hap6	3976947	3976948	rs9276643	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6p21.32	NR	rs9276643-C	0.6647	8E-12		1.0858942	[1.06-1.11]	Affymetrix [15688218] (imputed)	N
615	chr6_qbl_hap6	3976947	3976948	rs9276643	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	6p21.32	NR	rs9276643-?	NR	7E-105	(conditional)			Affymetrix [15688218] (imputed)	N
615	chr6_qbl_hap6	3977640	3977641	rs12661352	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs12661352-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
615	chr6_qbl_hap6	3978442	3978443	rs9501203	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.32		rs9501203-T	0.677	8E-12				Affymetrix [10369434] (imputed)	N
615	chr6_qbl_hap6	3981066	3981067	rs28986343	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous malignant melanoma	36,760 European ancestry cases, 375,188 European ancestry controls	NA	6p21.32	HLA-DQB2	rs28986343-C	0.952	2E-8		1.1531	NR	Affymetrix, Illumina [NR] (imputed)	N
615	chr6_qbl_hap6	3981602	3981603	rs574879686	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs574879686-A	0.018	1E-6		0.701	[0.56-0.84]	Illumina [11270530] (imputed)	N
615	chr6_qbl_hap6	3983529	3983530	rs7749543	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6p21.32	NR	rs7749543-G	0.6269	8E-10		1.0775862	[1.05-1.1]	Affymetrix [15688218] (imputed)	N
615	chr6_qbl_hap6	3983529	3983530	rs7749543	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	6p21.32	NR	rs7749543-?	NR	8E-115	(conditional)			Affymetrix [15688218] (imputed)	N
615	chr6_qbl_hap6	3983529	3983530	rs7749543	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p21.32	NR	rs7749543-?	NR	3E-6		0.0596	[0.035-0.085] unit increase	Illumina [at least 560000] (imputed)	N
615	chr6_qbl_hap6	3990507	3990508	rs7758736	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DOB	rs7758736-A	NR	1E-9		0.02222	[0.015-0.029] unit decrease	Affymetrix [321169] (imputed)	N
615	chr6_qbl_hap6	4020818	4020819	rs2621322	30552173	Aterido A	2018-12-14	Ann Rheum Dis	Genetic variation at the glycosaminoglycan metabolism pathway contributes to the risk of psoriatic arthritis but not psoriasis.	Psoriatic arthritis	744 Spanish ancestry cases, 1,454 Spanish ancestry controls	1,430 cases, 1,417 controls	6p21.32	NR	rs2621322-?	NR	2E-8		5.6	[NR] z-score decrease	Illumina [1387382] (imputed)	N
615	chr6_qbl_hap6	4021506	4021507	rs151027268	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.32	NR	rs151027268-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
615	chr6_qbl_hap6	4025628	4025629	rs13501	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	TAP2	rs13501-A	NR	3E-9		0.0199818	[0.013-0.027] unit decrease	Affymetrix [323123] (imputed)	N
615	chr6_qbl_hap6	4027137	4027138	rs10484565	26272072	Jiang X	2015-08-13	Rheumatology (Oxford)	An Immunochip-based interaction study of contrasting interaction effects with smoking in ACPA-positive versus ACPA-negative rheumatoid arthritis.	ACPA-positive rheumatoid arthritis (smoking interaction)	340 European ancestry never-smoker cases, 493 European ancestry ever-smoker cases, 746 European ancestry never-smoker controls, 994 European ancestry ever-smoker controls	187 European ancestry never-smoker cases, 421 European ancestry ever-smoker cases, 461 European ancestry never-smoker controls, 447 European ancestry ever-smoker controls	6p21.32	NR	rs10484565-?	NR	7E-10	(adjusted for HLA shared epitope)	1.4285715	[1.09-2.13]	Illumina [133648] (imputed)	N
615	chr6_qbl_hap6	4028331	4028332	rs241453	32492067	Ruffieux H	2020-06-03	PLoS Comput Biol	A fully joint Bayesian quantitative trait locus mapping of human protein abundance in plasma.	Protein quantitative trait loci	376 European ancestry individuals	400 European ancestry individuals	6p21.32	NR	rs241453-?	NR	2E-6	(C4a)			Illumina [~ 4000000] (imputed)	N
615	chr6_qbl_hap6	4029220	4029221	rs241443	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	6p21.32	TAP2	rs241443-G	0.294917	2E-19		0.022992264	[0.018-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
615	chr6_qbl_hap6	4029878	4029879	rs2228391	26151496	Chen PL	2015-07-07	Nat Commun	Genetic determinants of antithyroid drug-induced agranulocytosis by human leukocyte antigen genotyping and genome-wide association study.	Thionamide-induced agranulocytosis in Graves' disease	21 East Asian ancestry cases with agranulocytosis, 662 East Asian ancestry cases without agranulocytosis	21 East Asian ancestry cases with agranulocytosis, 546 East Asian ancestry cases without agranulocytosis	6p21.32	HLA	rs2228391-C	0.108	4E-7	(trend)	3.32	[2.02-5.46] (allelic)	Affymetrix [522980]	N
615	chr6_qbl_hap6	4029981	4029982	rs241436	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6p21.32		rs241436-?	NR	7E-9		1.06498	[1.04-1.09]	NR [685523]	N
615	chr6_qbl_hap6	4029981	4029982	rs241436	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in lean individuals	up to 5,529 European ancestry male individuals, up to 9,753 European ancestry female individuals	NA	6p21.32	TAP2	rs241436-G	0.49	8E-6	(men)	0.089	[0.05-0.128] kg/m2 increase	Affymetrix, Illumina [at least 188473] (imputed)	N
615	chr6_qbl_hap6	4031950	4031951	rs60045856	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	6p21.32	NR	rs60045856-G	0.11004825178496	5E-12		0.0101193655	[0.0072-0.013] unit decrease	NR [NR]	N
615	chr6_qbl_hap6	4031950	4031951	rs60045856	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p21.32	NR	rs60045856-?	NR	3E-8		0.0829	[0.054-0.112] unit increase	Illumina [at least 560000] (imputed)	N
615	chr6_qbl_hap6	4034567	4034568	rs62397688	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	IgA nephropathy	1,180 East Asian ancestry cases, 899 East Asian ancestry controls	NA			rs62397688-A	NR	4E-6		0.58857	[0.34-0.84] unit decrease	Illumina [NR] (imputed)	N
615	chr6_qbl_hap6	4034912	4034913	rs4148872	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Diastolic blood pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	6p21.32	HLA	rs4148872-T	0.148057452	2E-7		0.2012	[0.13-0.28] unit increase	Affymetrix [~ 9800000] (imputed)	N
615	chr6_qbl_hap6	4035513	4035514	rs28724898	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p21.32	NR	rs28724898-?	NR	4E-13		0.1556	[0.11-0.2] unit decrease	Illumina [at least 560000] (imputed)	N
615	chr6_qbl_hap6	4035945	4035946	rs241429	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	TAP2	rs241429-A	NR	3E-8		0.0169285	[0.011-0.023] unit increase	Affymetrix [323123] (imputed)	N
615	chr6_qbl_hap6	4036175	4036176	rs241428	23028341	Yang X	2012-09-13	PLoS Genet	Genome-wide association study for serum complement C3 and C4 levels in healthy Chinese subjects.	Complement C3 and C4 levels	1,999 Han Chinese ancestry male individuals	1,496 Han Chinese ancestry male individuals	6p21.32	HLA-DQB	rs241428-G	0.08	9E-83	(Serum level of C4)	0.23	[0.21-0.25] g/L increase	Illumina [1940245] (imputed)	N
615	chr6_qbl_hap6	4036324	4036325	rs3819715	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (mother's age at death or mother's attained age)	up to 699,000 individuals	NA	6p21.32	NR	rs3819715-C		7E-6				Illumina [458525]	N
615	chr6_qbl_hap6	4036404	4036405	rs3819717	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (non-Lofgren's syndrome without extrapulmonary manifestations)	451 Swedish ancestry cases, 2,086 Swedish ancestry controls	NA	6p21.32	TAP2, PSMB9, HLA-DMB, HLA-DPB1	rs3819717-G	0.515	2E-6		1.434	[1.249-1.648]	Illumina [118177]	N
615	chr6_qbl_hap6	4036519	4036520	rs241427	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p21.32	TAP2	rs241427-G	0.797	4E-6		0.062	[0.035-0.089] unit decrease	Affymetrix, Illumina [7374092] (imputed)	N
615	chr6_qbl_hap6	4036675	4036676	rs3819720	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.32	NR	rs3819720-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
615	chr6_qbl_hap6	4036675	4036676	rs3819720	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs3819720-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
615	chr6_qbl_hap6	4036675	4036676	rs3819720	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p21.32	NR	rs3819720-?	NR	1E-12		0.1645	[0.12-0.21] unit decrease	Illumina [at least 560000] (imputed)	N
615	chr6_qbl_hap6	4036984	4036985	rs1871665	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.32		rs1871665-T	0.55322	1E-12		1.0307605	[1.02-1.04]	Affymetrix, Illumina [9851866] (imputed)	N
615	chr6_qbl_hap6	4037154	4037155	rs2239701	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	Composite immunoglobulin trait (IgA/IgG)	14,183 Icelandic ancestry individuals	2,146 Swedish ancestry individuals	6p21.32	TAP2	rs2239701-C	0.368	3E-10		0.08	NR SD units decrease	Illumina [21568490] (imputed)	N
615	chr6_qbl_hap6	4037412	4037413	rs2071466	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.32		rs2071466-C	0.704	1E-10				Affymetrix [10369434] (imputed)	N
615	chr6_qbl_hap6	4037412	4037413	rs2071466	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p21.32	TAP2	rs2071466-T		1E-24		0.024	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
615	chr6_qbl_hap6	4038498	4038499	rs4148870	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p21.32	TAP2	rs4148870-C	0.402	2E-6		0.053	[0.031-0.075] unit increase	Affymetrix, Illumina [7374092] (imputed)	N
615	chr6_qbl_hap6	4038660	4038661	rs74365910	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Ulcerative colitis (PheCode 555.2)	2,569 European ancestry cases, 453,779 European ancestry controls	NA	6p21.32		rs74365910-A	0.009189	9E-10		0.97	[0.66-1.28] unit increase	NR [11842647] (imputed)	N
615	chr6_qbl_hap6	4038660	4038661	rs74365910	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Treatment or medication use - levothyroxine sodium (UKB data field 20003_1141191044)	18,688 European ancestry cases, 437,588 European ancestry controls	NA	6p21.32		rs74365910-A	0.009068	2E-15		0.46	[0.35-0.57] unit increase	NR [11842647] (imputed)	N
615	chr6_qbl_hap6	4039596	4039597	rs114595701	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	6p21.32	NR	rs114595701-T	0.0925422107617213	2E-9		0.012502657	[0.0084-0.0166] unit decrease	NR [NR]	N
615	chr6_qbl_hap6	4039596	4039597	rs114595701	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	6p21.32	NR	rs114595701-T	0.0925422107617213	6E-9		0.013367118	[0.0089-0.0179] unit decrease	NR [NR]	N
615	chr6_qbl_hap6	4039596	4039597	rs114595701	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	6p21.32	NR	rs114595701-T	0.0925422107617213	2E-9		0.010604257	[0.0071-0.0141] unit decrease	NR [NR]	N
615	chr6_qbl_hap6	4040405	4040406	rs45506201	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	6p21.32	NR	rs45506201-A	0.0926176111889165	4E-9		0.015973978	[0.011-0.021] unit decrease	NR [NR]	N
615	chr6_qbl_hap6	4041954	4041955	rs9357155	21399633	Gharavi AG	2011-03-13	Nat Genet	Genome-wide association study identifies susceptibility loci for IgA nephropathy.	Nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls	712 Han Chinese ancestry cases, 748 Han Chinese ancestry controls, 1,238 European ancestry cases, 1,172 European ancestry controls	6p21.32	TAP2, TAP1, PSMB8, PSMB9	rs9357155-?	0.87 (EA)	2E-12		1.41	[NR]	Illumina [498322]	N
615	chr6_qbl_hap6	4043735	4043736	rs2071543	32912934	Li M	2020-09-10	J Am Soc Nephrol	Genome-Wide Meta-Analysis Identifies Three Novel Susceptibility Loci and Reveals Ethnic Heterogeneity of Genetic Susceptibility for IgA Nephropathy.	IgA nephropathy	2,628 Chinese ancestry cases, 11,563 Chinese ancestry controls	6,879 Han Chinese ancestry cases, 9,019 Han Chinese ancestry controls, 1,039 Italian ancestry cases, 1,289 Italian ancestry controls	6p21.32	PSMB8	rs2071543-G	0.8187836227622588	1E-6	(East Asian)	1.2505606	[1.14305470436016-1.36817776509077]	NR [3611808] (imputed)	N
615	chr6_qbl_hap6	4043735	4043736	rs2071543	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	6p21.32	PSMB9, TAP1, TAP2, PSMB8	rs2071543-G	0.80	2E-9	(East Asian)	1.41	[NR]	Illumina [> 1000000] (imputed)	N
615	chr6_qbl_hap6	4044634	4044635	rs2071463	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	6p21.32		rs2071463-?	NR	5E-8				Affymetrix [NR] (imputed)	N
615	chr6_qbl_hap6	4050136	4050137	rs113206908	32771030	Tangtanatakul P	2020-08-08	Arthritis Res Ther	Meta-analysis of genome-wide association study identifies FBN2 as a novel locus associated with systemic lupus erythematosus in Thai population.	Systemic lupus erythematosus	487 Thai cases, 1,606 Thai controls	405 Thai cases, 1,590 Thai controls	6p21.32	PSMB9	rs113206908-G	0.21	4E-7		1.4327	[NR]	Illumina [421909] (imputed)	N
615	chr6_qbl_hap6	4050784	4050785	rs2071538	32534018	Liu X	2020-06-10	Brain Behav Immun	Genetic factors underlying the bidirectional relationship between autoimmune and mental disorders - findings from a Danish population-based study.	Autoimmune traits	1,383 Danish ancestry cases, 62,656 Danish ancestry controls	NA	6p21.32	NR	rs2071538-A	0.24	8E-10		0.74	[0.67-0.82]	NR [7721839] (imputed)	N
615	chr6_qbl_hap6	4053553	4053554	rs2071536	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	PSMB9, TAP1	rs2071536-T	NR	5E-8		0.0260034	[0.017-0.035] unit decrease	Affymetrix [323123] (imputed)	N
615	chr6_qbl_hap6	4053553	4053554	rs2071536	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.32		rs2071536-T	0.111873	8E-10		1.0421276	[1.03-1.05]	Affymetrix, Illumina [9851866] (imputed)	N
615	chr6_qbl_hap6	4054350	4054351	rs17220241	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.32	HLA-Z, TAP2, PSMB9, PSMB8-AS1, XXbac-BPG246D15.9, TAP1, PSMB8	rs17220241-T	0.02156469	1E-21	(EA, Alpha-2-macroglobulin receptor-associated protein)	1.387	[1.11-1.66] unit increase	Affymetrix [509946]	N
615	chr6_qbl_hap6	4062119	4062120	rs7767288	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	6p21.32	PSMB9	rs7767288-A	0.4112	1E-11		0.02464776	[0.018-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
616	chr6_qbl_hap6	4064890	4064891	rs1055559	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	6p21.32	NR	rs1055559-?	NR	9E-7		0.079	[0.047-0.111] unit increase	Illumina [at least 560000] (imputed)	N
616	chr6_qbl_hap6	4064890	4064891	rs1055559	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	6p21.32	Intergenic	rs1055559-T	NR	4E-9		0.039613	[0.026-0.053] unit decrease	Illumina [13520550] (imputed)	N
616	chr6_qbl_hap6	4075079	4075080	rs6903433	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.32		rs6903433-C	0.87	7E-9				Affymetrix [10369434] (imputed)	N
616	chr6_qbl_hap6	4084752	4084753	rs2187689	22993228	Williams FM	2012-09-19	Ann Rheum Dis	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NA	6p21.32	PSMB9	rs2187689-C	0.08	3E-8		0.23	[0.15-0.31] unit increase	Affymetrix, Illumina [2552511] (imputed)	N
616	chr6_qbl_hap6	4085327	4085327	rs11459466	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	PPP1R2P1	rs11459466-GT	NR	4E-8		0.0204679	[0.013-0.028] unit increase	Affymetrix [323858] (imputed)	N
616	chr6_qbl_hap6	4085382	4085383	rs7767732	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.32		rs7767732-C	0.822	3E-21				Affymetrix [10369434] (imputed)	N
616	chr6_qbl_hap6	4086798	4086799	rs10046257	22993228	Williams FM	2012-09-19	Ann Rheum Dis	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NA	6p21.32	intergenic	rs10046257-A	0.10	3E-7		0.19	[0.12-0.26] unit increase	Affymetrix, Illumina [2552511] (imputed)	N
616	chr6_qbl_hap6	4087818	4087819	rs6457690	22993228	Williams FM	2012-09-19	Ann Rheum Dis	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NA	6p21.32	intergenic	rs6457690-A	0.10	9E-8		0.19	[0.12-0.26] unit increase	Affymetrix, Illumina [2552511] (imputed)	N
616	chr6_qbl_hap6	4088482	4088483	rs1029296	22993228	Williams FM	2012-09-19	Ann Rheum Dis	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NA	6p21.32	intergenic	rs1029296-C	0.10	9E-8		0.19	[0.12-0.26] unit increase	Affymetrix, Illumina [2552511] (imputed)	N
616	chr6_qbl_hap6	4088583	4088584	rs1029295	22993228	Williams FM	2012-09-19	Ann Rheum Dis	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NA	6p21.32	intergenic	rs1029295-C	0.10	5E-7		0.19	[0.12-0.26] unit increase	Affymetrix, Illumina [2552511] (imputed)	N
616	chr6_qbl_hap6	4089035	4089036	rs6936004	22993228	Williams FM	2012-09-19	Ann Rheum Dis	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NA	6p21.32	intergenic	rs6936004-C	0.10	1E-7		0.19	[0.12-0.26] unit increase	Affymetrix, Illumina [2552511] (imputed)	N
616	chr6_qbl_hap6	4089520	4089521	rs10214886	22993228	Williams FM	2012-09-19	Ann Rheum Dis	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NA	6p21.32	intergenic	rs10214886-A	0.10	2E-7		0.19	[0.12-0.26] unit increase	Affymetrix, Illumina [2552511] (imputed)	N
616	chr6_qbl_hap6	4089637	4089638	rs10214760	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6p21.32	TAP1	rs10214760-?	NR	3E-6	(dimethylglycine)	0.3002602	[0.17-0.43] unit decrease	Affymetrix [at least 2500000] (imputed)	N
616	chr6_qbl_hap6	4091813	4091814	rs7744666	22993228	Williams FM	2012-09-19	Ann Rheum Dis	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NA	6p21.32	intergenic	rs7744666-C	0.10	6E-8		0.2	[0.13-0.27] unit increase	Affymetrix, Illumina [2552511] (imputed)	N
616	chr6_qbl_hap6	4091849	4091850	rs11969002	22993228	Williams FM	2012-09-19	Ann Rheum Dis	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NA	6p21.32	intergenic	rs11969002-A	0.10	6E-8		0.2	[0.13-0.27] unit increase	Affymetrix, Illumina [2552511] (imputed)	N
616	chr6_qbl_hap6	4092853	4092854	rs9469300	22993228	Williams FM	2012-09-19	Ann Rheum Dis	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NA	6p21.32	intergenic	rs9469300-A	0.10	1E-7		0.19	[0.12-0.26] unit increase	Affymetrix, Illumina [2552511] (imputed)	N
616	chr6_qbl_hap6	4094708	4094709	rs3749982	22993228	Williams FM	2012-09-19	Ann Rheum Dis	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NA	6p21.32	intergenic	rs3749982-A	0.10	1E-7		0.19	[0.12-0.26] unit increase	Affymetrix, Illumina [2552511] (imputed)	N
616	chr6_qbl_hap6	4098196	4098197	rs9276916	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	Systemic lupus erythematosus	1,639 East Asian ancestry cases, 2,410 East Asian ancestry controls	NA			rs9276916-G	NR	2E-8		0.2244	[0.15-0.3] unit increase	Illumina [NR] (imputed)	N
616	chr6_qbl_hap6	4102158	4102159	rs3101942	26297903	Fabbri C	2015-08-20	Prog Neuropsychopharmacol Biol Psychiatry	Genetics of long-term treatment outcome in bipolar disorder.	Manic episodes in bipolar disorder	706 European ancestry cases	NA	6p21.32	LOC100294145	rs3101942-?	NR	7E-6		1.733	[1.365-2.201]	Affymetrix [329806] (imputed)	N
616	chr6_qbl_hap6	4105020	4105021	rs574560492	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs574560492-?	NR	5E-8				Affymetrix [~ 8270000] (imputed)	N
616	chr6_qbl_hap6	4120361	4120362	rs117231810	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.32	Intergenic	rs117231810-?		4E-6		1.06	[1.03-1.08]	Illumina [7645193] (imputed)	N
616	chr6_qbl_hap6	4120361	4120362	rs117231810	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.32	Intergenic	rs117231810-?		1E-6		1.69	[1.37-2.09]	Illumina [7645193] (imputed)	N
616	chr6_qbl_hap6	4123463	4123464	rs194679	32534018	Liu X	2020-06-10	Brain Behav Immun	Genetic factors underlying the bidirectional relationship between autoimmune and mental disorders - findings from a Danish population-based study.	Autoimmune traits	1,383 Danish ancestry cases, 62,656 Danish ancestry controls	NA	6p21.32	NR	rs194679-T	0.047	1E-9		1.62	[1.4-1.87]	NR [7721839] (imputed)	N
616	chr6_qbl_hap6	4132508	4132510	rs57390839	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	6p21.32	PSMB9, HLA-DMB	rs57390839-?	NR	2E-15		0.303437	[0.23-0.38] unit increase	Illumina [at least 950000] (imputed)	N
616	chr6_qbl_hap6	4132508	4132510	rs57390839	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p21.32	NR	rs57390839-?	NR	1E-7		0.0931	[0.058-0.128] unit increase	Illumina [at least 560000] (imputed)	N
616	chr6_qbl_hap6	4136165	4136166	rs77318243	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DMB	rs77318243-A	NR	3E-11		0.0352508	[0.025-0.046] unit decrease	Affymetrix [323858] (imputed)	N
616	chr6_qbl_hap6	4136165	4136166	rs77318243	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	HLA-DMB	rs77318243-A	NR	2E-10		0.0339654	[0.024-0.044] unit decrease	Affymetrix [127266] (imputed)	N
616	chr6_qbl_hap6	4140098	4140099	rs147725790	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6p21.32	NR	rs147725790-T	0.98229	2E-12		1.1804981	[1.13-1.23]	Affymetrix [15688218] (imputed)	N
616	chr6_qbl_hap6	4143455	4143456	rs116560929	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.32	NR	rs116560929-A	0.01045	3E-9	(FHL1)	0.008308	NR unit increase	Illumina [1671387] (imputed)	N
616	chr6_qbl_hap6	4143455	4143456	rs116560929	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.32	NR	rs116560929-A	0.01045	3E-10	(TAGLN)	0.4341	NR unit increase	Illumina [1671387] (imputed)	N
616	chr6_qbl_hap6	4143455	4143456	rs116560929	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.32	NR	rs116560929-A	0.01045	2E-8	(CNN2)	0.01914	NR unit increase	Illumina [1671387] (imputed)	N
616	chr6_qbl_hap6	4143939	4143940	rs2395296	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs2395296-A	NR	9E-8		1.089	[1.055-1.124]	Affymetrix [7846216] (imputed)	N
616	chr6_qbl_hap6	4145371	4145372	rs1480380	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p21.32	HLA-DMB, HLA-DMA	rs1480380-A	0.252	6E-23				Illumina [118177]	N
616	chr6_qbl_hap6	4145371	4145372	rs1480380	23453885	Smoller JW	2013-02-27	Lancet	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NA	6p21.32	NR	rs1480380-C	0.908	6E-7	(Modelling analysis)			NR [1252901] (imputed)	N
616	chr6_qbl_hap6	4145371	4145372	rs1480380	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.32	intergenic	rs1480380-T	0.0877	4E-39		3.05	[NR]	Illumina [242824]	N
616	chr6_qbl_hap6	4146851	4146852	rs73396800	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	6p21.32	NR	rs73396800-G	NR	4E-16		1.1904762	[NR]	Illumina [7158791] (imputed)	N
616	chr6_qbl_hap6	4147976	4147977	rs16871226	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	NR	rs16871226-G	0.0244821228239845	2E-6	(IGP67)	0.5182	[0.3-0.73] unit increase	Illumina [~ 2500000] (imputed)	N
616	chr6_qbl_hap6	4150584	4150585	rs12153970	26584805	Dorajoo R	2015-11-19	Genes Nutr	A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.	Plasma omega-3 polyunsaturated fatty acid levels (docosahexaenoic acid)	717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls	NA	6p21.32	NR	rs12153970-G	0.9496	4E-6		0.2241	[0.13-0.32] unit increase	Illumina [up to 1980188] (imputed)	N
616	chr6_qbl_hap6	4151703	4151704	rs146693865	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.32	NR	rs146693865-G	0.01045	3E-9	(FHL1)	0.008308	NR unit increase	Illumina [1671387] (imputed)	N
616	chr6_qbl_hap6	4151703	4151704	rs146693865	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.32	NR	rs146693865-G	0.01045	3E-10	(TAGLN)	0.4341	NR unit increase	Illumina [1671387] (imputed)	N
616	chr6_qbl_hap6	4151703	4151704	rs146693865	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.32	NR	rs146693865-G	0.01045	2E-8	(CNN2)	0.01914	NR unit increase	Illumina [1671387] (imputed)	N
616	chr6_qbl_hap6	4154587	4154588	rs9378127	30552173	Aterido A	2018-12-14	Ann Rheum Dis	Genetic variation at the glycosaminoglycan metabolism pathway contributes to the risk of psoriatic arthritis but not psoriasis.	Psoriatic arthritis	744 Spanish ancestry cases, 1,454 Spanish ancestry controls	1,430 cases, 1,417 controls	6p21.32	NR	rs9378127-?	NR	4E-7		5.07	[NR] z-score increase	Illumina [1387382] (imputed)	N
616	chr6_qbl_hap6	4156712	4156713	rs209474	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.32		rs209474-A	0.623	4E-15				Affymetrix [10369434] (imputed)	N
616	chr6_qbl_hap6	4156712	4156713	rs209474	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	6p21.32	HLA-DMA	rs209474-G	0.377123	1E-12		0.016615335	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
616	chr6_qbl_hap6	4156712	4156713	rs209474	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	6p21.32	HLA-DMA	rs209474-G	0.377106	6E-15		0.018046945	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
616	chr6_qbl_hap6	4156712	4156713	rs209474	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	6p21.32	NR	rs209474-A	0.624456	7E-9		0.0127924	[0.0085-0.0171] unit decrease	NR [NR]	N
616	chr6_qbl_hap6	4156712	4156713	rs209474	29121268	Amare AT	2017-11-09	JAMA Psychiatry	Association of Polygenic Score for Schizophrenia and HLA Antigen and Inflammation Genes With Response to Lithium in Bipolar Affective Disorder: A Genome-Wide Association Study.	Bipolar disorder lithium response (continuous) or schizophrenia	2,366 European ancestry lithium treated bipolar disorder cases, 220 Asian ancestry lithium treated bipolar disorder cases, 36,989 schizophrenia cases, controls (see Ripke et al 2014 PMID:25056061)	NA	6p21.32	HLA, DMA	rs209474-A		2E-8				NR [NR] (imputed)	N
616	chr6_qbl_hap6	4157827	4157828	rs580962	35215271	Almandil NB	2022-01-27	Pharmaceuticals (Basel)	Integration of Transcriptome and Exome Genotyping Identifies Significant Variants with Autism Spectrum Disorder.	Autism spectrum disorder	70 Arab ancestry cases, 132 Arab ancestry controls	NA	6p21.32	NA	rs580962-G	0.5852	6E-6		0.3383	[0.2105-0.5436]	Illumina [243345]	N
616	chr6_qbl_hap6	4160445	4160446	rs209476	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.32		rs209476-G	0.683	9E-16				Affymetrix [10369434] (imputed)	N
616	chr6_qbl_hap6	4161124	4161125	rs9276931	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	6p21.32	HLA-DMA	rs9276931-A	0.8852	5E-23		0.0292	[0.023-0.035] unit decrease	Affymetrix [18391927] (imputed)	N
616	chr6_qbl_hap6	4167291	4167292	rs115249787	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.32	NR	rs115249787-A	0.01045	3E-9	(FHL1)	0.008308	NR unit increase	Illumina [1671387] (imputed)	N
616	chr6_qbl_hap6	4167291	4167292	rs115249787	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.32	NR	rs115249787-A	0.01045	3E-10	(TAGLN)	0.4341	NR unit increase	Illumina [1671387] (imputed)	N
616	chr6_qbl_hap6	4167291	4167292	rs115249787	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.32	NR	rs115249787-A	0.01045	2E-8	(CNN2)	0.01914	NR unit increase	Illumina [1671387] (imputed)	N
616	chr6_qbl_hap6	4177667	4177668	rs3097644	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p21.32	BRD2	rs3097644-G		2E-8		0.02	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
616	chr6_qbl_hap6	4177836	4177839	rs3918142	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p21.32	NR	rs3918142-?	NR	4E-7		0.117	[0.072-0.162] unit decrease	Illumina [at least 560000] (imputed)	N
616	chr6_qbl_hap6	4178166	4178167	rs34530779	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.32	NR	rs34530779-A	0.01045	3E-9	(FHL1)	0.008308	NR unit increase	Illumina [1671387] (imputed)	N
616	chr6_qbl_hap6	4178166	4178167	rs34530779	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.32	NR	rs34530779-A	0.01045	3E-10	(TAGLN)	0.4341	NR unit increase	Illumina [1671387] (imputed)	N
616	chr6_qbl_hap6	4178166	4178167	rs34530779	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.32	NR	rs34530779-A	0.01045	2E-8	(CNN2)	0.01914	NR unit increase	Illumina [1671387] (imputed)	N
616	chr6_qbl_hap6	4178459	4178460	rs76088152	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p21.32	NR	rs76088152-?	NR	8E-9		0.2377	[0.16-0.32] unit decrease	Illumina [at least 560000] (imputed)	N
616	chr6_qbl_hap6	4180940	4180941	rs1049526	28008999	Ostrowski J	2016-12-23	Sci Rep	Genetic architecture differences between pediatric and adult-onset inflammatory bowel diseases in the Polish population.	Ulcerative colitis	269 Polish ancestry child cases, 259 Polish ancestry adult cases, 582 Polish ancestry controls	121 Polish ancestry child cases, 85 Polish ancestry adult cases, 352 Polish ancestry controls	6p21.32	BRD2	rs1049526-?		3E-7	(Adults)	2.697503	[1.87-3.90]	Illumina [2612357]	N
616	chr6_qbl_hap6	4180940	4180941	rs1049526	28008999	Ostrowski J	2016-12-23	Sci Rep	Genetic architecture differences between pediatric and adult-onset inflammatory bowel diseases in the Polish population.	Ulcerative colitis	269 Polish ancestry child cases, 259 Polish ancestry adult cases, 582 Polish ancestry controls	121 Polish ancestry child cases, 85 Polish ancestry adult cases, 352 Polish ancestry controls	6p21.32	BRD2	rs1049526-?		2E-8		2.3810558	[1.74-3.26]	Illumina [2612357]	N
616	chr6_qbl_hap6	4180940	4180941	rs1049526	28008999	Ostrowski J	2016-12-23	Sci Rep	Genetic architecture differences between pediatric and adult-onset inflammatory bowel diseases in the Polish population.	Inflammatory bowel disease	622 Polish ancestry child cases, 496 Polish ancestry adult cases, 582 Polish ancestry controls	192 Polish ancestry child cases, 185 Polish ancestry adult cases, 352 Polish ancestry controls	6p21.32	BRD2	rs1049526-?	NR	9E-10	(Adult)	2.659634	[1.93-3.66]	Illumina [2612357]	N
616	chr6_qbl_hap6	4180940	4180941	rs1049526	28008999	Ostrowski J	2016-12-23	Sci Rep	Genetic architecture differences between pediatric and adult-onset inflammatory bowel diseases in the Polish population.	Inflammatory bowel disease	622 Polish ancestry child cases, 496 Polish ancestry adult cases, 582 Polish ancestry controls	192 Polish ancestry child cases, 185 Polish ancestry adult cases, 352 Polish ancestry controls	6p21.32	BRD2	rs1049526-?	NR	5E-11		2.434453	[1.83-3.24]	Illumina [2612357]	N
616	chr6_qbl_hap6	4180940	4180941	rs1049526	28008999	Ostrowski J	2016-12-23	Sci Rep	Genetic architecture differences between pediatric and adult-onset inflammatory bowel diseases in the Polish population.	Inflammatory bowel disease	622 Polish ancestry child cases, 496 Polish ancestry adult cases, 582 Polish ancestry controls	192 Polish ancestry child cases, 185 Polish ancestry adult cases, 352 Polish ancestry controls	6p21.32	BRD2	rs1049526-?	NR	2E-8	(Children)	2.3504539	[1.73-3.19]	Illumina [2612357]	N
616	chr6_qbl_hap6	4180940	4180941	rs1049526	28008999	Ostrowski J	2016-12-23	Sci Rep	Genetic architecture differences between pediatric and adult-onset inflammatory bowel diseases in the Polish population.	Crohn's disease	353 Polish ancestry child cases, 237 Polish ancestry adult cases, 582 Polish ancestry controls	71 Polish ancestry child cases, 100 Polish ancestry adult cases, 352 Polish ancestry controls	6p21.32	BRD2	rs1049526-?	NR	5E-9		2.4428785	[1.79-3.33]	Illumina [2612357]	N
616	chr6_qbl_hap6	4180940	4180941	rs1049526	28008999	Ostrowski J	2016-12-23	Sci Rep	Genetic architecture differences between pediatric and adult-onset inflammatory bowel diseases in the Polish population.	Crohn's disease	353 Polish ancestry child cases, 237 Polish ancestry adult cases, 582 Polish ancestry controls	71 Polish ancestry child cases, 100 Polish ancestry adult cases, 352 Polish ancestry controls	6p21.32	BRD2	rs1049526-?	NR	3E-7	(Children)	2.4273632	[1.72-3.42]	Illumina [2612357]	N
616	chr6_qbl_hap6	4180940	4180941	rs1049526	28008999	Ostrowski J	2016-12-23	Sci Rep	Genetic architecture differences between pediatric and adult-onset inflammatory bowel diseases in the Polish population.	Crohn's disease	353 Polish ancestry child cases, 237 Polish ancestry adult cases, 582 Polish ancestry controls	71 Polish ancestry child cases, 100 Polish ancestry adult cases, 352 Polish ancestry controls	6p21.32	BRD2	rs1049526-?	NR	3E-6	(Adults)	2.530363	[1.73-3.70]	Illumina [2612357]	N
616	chr6_qbl_hap6	4185416	4185417	rs3097645	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	NR	rs3097645-C	0.87438328769575	7E-6	(IGP59)	0.2057	[0.12-0.3] unit increase	Illumina [~ 2500000] (imputed)	N
616	chr6_qbl_hap6	4185416	4185417	rs3097645	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	NR	rs3097645-C	0.874270331235955	2E-6	(IGP42)	0.2151	[0.13-0.3] unit decrease	Illumina [~ 2500000] (imputed)	N
616	chr6_qbl_hap6	4185416	4185417	rs3097645	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	NR	rs3097645-C	0.874157767431399	5E-6	(IGP2)	0.2092	[0.12-0.3] unit decrease	Illumina [~ 2500000] (imputed)	N
616	chr6_qbl_hap6	4185416	4185417	rs3097645	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	NR	rs3097645-C	0.873857556055831	6E-6	(IGP16)	0.2057	[0.12-0.29] unit decrease	Illumina [~ 2500000] (imputed)	N
616	chr6_qbl_hap6	4185416	4185417	rs3097645	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	NR	rs3097645-C	0.873550828800713	6E-6	(IGP61)	0.206	[0.12-0.3] unit increase	Illumina [~ 2500000] (imputed)	N
616	chr6_qbl_hap6	4185416	4185417	rs3097645	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	NR	rs3097645-C	0.873514573726542	3E-6	(IGP58)	0.2131	[0.12-0.3] unit increase	Illumina [~ 2500000] (imputed)	N
616	chr6_qbl_hap6	4185416	4185417	rs3097645	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	NR	rs3097645-C	0.872971129118433	6E-7	(IGP65)	0.2253	[0.14-0.31] unit increase	Illumina [~ 2500000] (imputed)	N
616	chr6_qbl_hap6	4192169	4192170	rs3130600	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	6p21.32	NR	rs3130600-?	NR	2E-6		0.079	[0.046-0.112] unit increase	Illumina [at least 560000] (imputed)	N
616	chr6_qbl_hap6	4192633	4192634	rs140545087	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	6p21.32	NR	rs140545087-?	NR	3E-10				Affymetrix [~ 8270000] (imputed)	N
616	chr6_qbl_hap6	4192633	4192634	rs140545087	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs140545087-?	NR	5E-9				Affymetrix [~ 8270000] (imputed)	N
616	chr6_qbl_hap6	4193500	4193501	rs9500927	21804548	Hirota T	2011-07-31	Nat Genet	Genome-wide association study identifies three new susceptibility loci for adult asthma in the Japanese population.	Asthma	1,532 Japanese ancestry cases, 3,304 Japanese ancestry controls	5,639 Japanese ancestry cases, 24,608 Japanese ancestry controls	6p21.32	HLA-DOA	rs9500927-T	0.26	4E-9		1.13	[1.09-1.18]	Illumina [458847]	N
616	chr6_qbl_hap6	4193760	4193761	rs172275	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	334,944 European ancestry, NR ancestry individuals	NA	6p21.32		rs172275-?	NR	5E-8				Affymetrix [NR] (imputed)	N
617	chr6_qbl_hap6	4195007	4195008	rs11757367	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.32		rs11757367-G	0.832	3E-15				Affymetrix [10369434] (imputed)	N
617	chr6_qbl_hap6	4198830	4198831	rs35520555	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.32		rs35520555-A	0.886	3E-8				Affymetrix [10369434] (imputed)	N
617	chr6_qbl_hap6	4204496	4204497	rs3128935	24024966	Teumer A	2013-08-14	J Clin Periodontol	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (CDC/AAP)	up to 3,915 European ancestry individuals	NA	6p21.32	HLA-DOA	rs3128935-T	0.97	9E-6	(Age 20-60 years)	2.28	[1.59-3.28]	Affymetrix, Illumina [up to 17585496] (imputed)	N
617	chr6_qbl_hap6	4205691	4205692	rs9276975	25758996	Pirastu N	2015-03-11	Eur J Hum Genet	Genome-wide association analysis on five isolated populations identifies variants of the HLA-DOA gene associated with white wine liking.	White wine liking	381 Carlantino (founder/genetic isolated) individuals, 744 Friuli Venezia Giulia (founder/genetic isolated) individuals, 1,115 Val Borbera (founder/genetic isolated) individuals	1,261 Erasmus Rucphen (founder/genetic isolated) individuals, 335 Silk Road individuals	6p21.32	HLA-DOA	rs9276975-T	0.15	2E-8		0.0539	[NR] unit increase	Illumina [9969492] (imputed)	N
617	chr6_qbl_hap6	4205691	4205692	rs9276975	25758996	Pirastu N	2015-03-11	Eur J Hum Genet	Genome-wide association analysis on five isolated populations identifies variants of the HLA-DOA gene associated with white wine liking.	Red wine liking	398 Carlantino (founder/genetic isolated) individuals, 751 Friuli Venezia Giulia (founder/genetic isolated) individuals, 1,122 Val Borbera (founder/genetic isolated) individuals	1,246 Erasmus Rucphen (founder/genetic isolated) individuals, 353 Silk Road individuals	6p21.32	HLA-DOA	rs9276975-T	0.15	8E-6		0.0419	[NR] unit increase	Illumina [6967159] (imputed)	N
617	chr6_qbl_hap6	4207026	4207027	rs378352	25802187	Jiang DK	2015-04-28	Hepatology	Genetic variants in five novel loci including CFB and CD40 predispose to chronic hepatitis B.	Chronic hepatitis B infection	2,514 Chinese ancestry cases, 1,130 Chinese ancestry controls	6,600 Chinese ancestry cases, 8,127 Chinese ancestry controls	6p21.32	HLA-DOA	rs378352-T	0.39	1E-23		1.26	[1.20-1.31]	Illumina [3680900] (imputed)	N
617	chr6_qbl_hap6	4207106	4207107	rs399604	22139419	Gieger C	2011-11-30	Nature	New gene functions in megakaryopoiesis and platelet formation.	Platelet count	38,891 European ancestry individuals, 1,661 Val Borbera (founder/genetic isolate) individuals, 521 Carlantino (founder/genetic isolate) individuals, 1,198 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,213 South Tyrolean (founder/genetic isolate) individuals, 890 Sorbian (founder/genetic isolate) individuals, 4,292 Sardinian (founder/genetic isolate) individuals	Up to 16,949 European ancestry individuals, 854 Cliento (founder/genetic isolate) individuals, 1,035 Talana (founder/genetic isolate) individuals	6p21.32	HLA-DOA	rs399604-C	NR	1E-10		2.346	[1.63-3.06] 10^9/l increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
617	chr6_qbl_hap6	4207603	4207604	rs2267647	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.32		rs2267647-A	0.331	4E-13				Affymetrix [10369434] (imputed)	N
617	chr6_qbl_hap6	4209512	4209513	rs381218	32534018	Liu X	2020-06-10	Brain Behav Immun	Genetic factors underlying the bidirectional relationship between autoimmune and mental disorders - findings from a Danish population-based study.	Autoimmune traits	1,383 Danish ancestry cases, 62,656 Danish ancestry controls	NA	6p21.32	NR	rs381218-T	0.29	1E-10		1.31	[1.21-1.42]	NR [7721839] (imputed)	N
617	chr6_qbl_hap6	4215846	4215847	rs11964504	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	6p21.32	NR	rs11964504-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
617	chr6_qbl_hap6	4220800	4220801	rs9296068	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	6p21.32	HLA-DOA	rs9296068-T	0.65	1E-8		1.05	[1.03-1.07]	Illumina [20370935] (imputed)	N
617	chr6_qbl_hap6	4221627	4221628	rs56042736	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	133,321 East Asian ancestry individuals	NA	6p21.32		rs56042736-G	0.049558	3E-17		0.0728205	[0.056-0.09] unit decrease	Illumina [13477433] (imputed)	N
617	chr6_qbl_hap6	4237541	4237542	rs150480104	32141793	Garman L	2020-03-06	Ocul Immunol Inflamm	Genome-Wide Association Study of Ocular Sarcoidosis Confirms HLA Associations and Implicates Barrier Function and Autoimmunity in African Americans.	Ocular sarcoidosis	260 African American cases, 1,551 African American controls	NA	6p21.32	NR	rs150480104-A	NR	8E-6		3.855	[2.13-6.98]	Illumina [13976150] (imputed)	N
617	chr6_qbl_hap6	4241430	4241431	rs78331658	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Measles	38,219 European ancestry cases, 47,279 European ancestry controls	NA	6p21.32	NR	rs78331658-?	NR	1E-7		1.7845	[1.12-2.45] unit increase	Illumina [at least 560000] (imputed)	N
617	chr6_qbl_hap6	4251061	4251062	rs9296069	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.32		rs9296069-C	0.749	5E-33				Affymetrix [10369434] (imputed)	N
617	chr6_qbl_hap6	4252456	4252457	rs3130582	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p21.32	HLA-DPA1	rs3130582-T	0.202102	3E-8	(-24 ms)	0.0369729	[0.023-0.051] unit increase	Affymetrix [10000000] (imputed)	N
617	chr6_qbl_hap6	4255254	4255255	rs9277176	29534301	Nishida N	2018-03-13	Hepatology	Key HLA-DRB1-DQB1 haplotypes and role of the BTNL2 gene for response to a hepatitis B vaccine.	Response to hepatitis B vaccine	107 Japanese ancestry low responder individuals, 351 Japanese ancestry intermediate responder individuals, 735 Japanese ancestry high responder individuals	NA	6p21.32	HLA-DPA1	rs9277176-?		1E-7		0.219	unit decrease	Affymetrix [427664]	N
617	chr6_qbl_hap6	4258051	4258052	rs6457709	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6p21.32		rs6457709-?	NR	2E-6		0.94528	[0.92-0.97]	NR [685523]	N
617	chr6_qbl_hap6	4258051	4258052	rs6457709	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Hepatitis B	1,425 European ancestry cases, 218,180 European ancestry controls	NA	6p21.32	NR	rs6457709-?	NR	8E-6		0.1819	[0.1-0.26] unit increase	Illumina [at least 560000] (imputed)	N
617	chr6_qbl_hap6	4258208	4258209	rs422544	32771030	Tangtanatakul P	2020-08-08	Arthritis Res Ther	Meta-analysis of genome-wide association study identifies FBN2 as a novel locus associated with systemic lupus erythematosus in Thai population.	Systemic lupus erythematosus	487 Thai cases, 1,606 Thai controls	405 Thai cases, 1,590 Thai controls	6p21.32	HLA-DOA, HLA-DPA1	rs422544-C	0.15	5E-8		0.6232	[NR]	Illumina [421909] (imputed)	N
617	chr6_qbl_hap6	4261085	4261086	rs9277332	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Keratinocyte cancer (MTAG)	at least 18,538 European ancestry cases, at least 340,302 European ancestry controls	NA	6p21.32	HLA-DPA1	rs9277332-G	0.744531	2E-9		1.06	[1.04-1.08]	Affymetrix [7600000] (imputed)	N
617	chr6_qbl_hap6	4261164	4261165	rs588997	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	6p21.32	NR	rs588997-A	NR	4E-6	(female)	0.1185	[0.068-0.169] unit decrease	Illumina [11133794] (imputed)	N
617	chr6_qbl_hap6	4261885	4261886	rs6457710	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	6p21.32	HLA-DPA1	rs6457710-G	0.268971	2E-11		0.017609773	[0.012-0.023] unit increase	Affymetrix [93095623] (imputed)	N
617	chr6_qbl_hap6	4264062	4264063	rs35449774	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.32	NR	rs35449774-?	NR	3E-11				Affymetrix [~ 8270000] (imputed)	N
617	chr6_qbl_hap6	4264062	4264063	rs35449774	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs35449774-?	NR	2E-16				Affymetrix [~ 8270000] (imputed)	N
617	chr6_qbl_hap6	4264062	4264063	rs35449774	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	6p21.32	HLA-DPA1, HLA-DPB1, HLA-DPB2	rs35449774-T	0.142188	7E-11		1.0714098	[1.05-1.09]	Affymetrix [8274727] (imputed)	N
617	chr6_qbl_hap6	4265315	4265316	rs1042901	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	6p21.32	HLA-DPA1	rs1042901-C	0.119144	1E-14		0.029356208	[0.022-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
617	chr6_qbl_hap6	4265472	4265473	rs3077	33736632	Zeng Z	2021-03-18	BMC Med Genomics	Genome-wide association study identifies new loci associated with risk of HBV infection and disease progression.	Persistent hepatitis B virus infection	587 Chinese ancestry persistent cases, 275 Chinese ancestry clearance controls	NA	6p21.32	HLA-DPA1	rs3077-A	0.4145	7E-9		0.5007	NR	Affymetrix [607153]	N
617	chr6_qbl_hap6	4265472	4265473	rs3077	25802187	Jiang DK	2015-04-28	Hepatology	Genetic variants in five novel loci including CFB and CD40 predispose to chronic hepatitis B.	Chronic hepatitis B infection	2,514 Chinese ancestry cases, 1,130 Chinese ancestry controls	6,600 Chinese ancestry cases, 8,127 Chinese ancestry controls	6p21.32	HLA-DPA1	rs3077-A	0.66	1E-53		1.45	[1.39-1.52]	Illumina [3680900] (imputed)	N
617	chr6_qbl_hap6	4265472	4265473	rs3077	23760081	Kim YJ	2013-06-10	Hum Mol Genet	A genome-wide association study identified new variants associated with the risk of chronic hepatitis B.	Chronic hepatitis B infection	400 Korean ancestry cases, 1,000 Korean ancestry controls	971 Korean ancestry cases, 1,938 Korean ancestry controls	6p21.32	HLA-DP	rs3077-?	NR	5E-39		1.89	[1.69-2.08]	Illumina [719265]	N
617	chr6_qbl_hap6	4265472	4265473	rs3077	22737229	Nishida N	2012-06-21	PLoS One	Genome-wide association study confirming association of HLA-DP with protection against chronic hepatitis B and viral clearance in Japanese and Korean.	Hepatitis B (viral clearance)	181 East Asian ancestry HBV carriers, 184 East Asian ancestry controls, 185 East Asian ancestry spontaneously HBV-resolved individuals	Up to 8,045 East Asian ancestry HBV carriers, up to 9,003 East Asian ancestry controls, up to 3,995 East Asian ancestry spontaneously HBV-resolved individuals	6p21.32	HLA-DPA1	rs3077-C	0.60	4E-45	(Protective effects against CHB)	1.82	[1.67-1.96]	Affymetrix [597789]	N
617	chr6_qbl_hap6	4265472	4265473	rs3077	22737229	Nishida N	2012-06-21	PLoS One	Genome-wide association study confirming association of HLA-DP with protection against chronic hepatitis B and viral clearance in Japanese and Korean.	Hepatitis B (viral clearance)	181 East Asian ancestry HBV carriers, 184 East Asian ancestry controls, 185 East Asian ancestry spontaneously HBV-resolved individuals	Up to 8,045 East Asian ancestry HBV carriers, up to 9,003 East Asian ancestry controls, up to 3,995 East Asian ancestry spontaneously HBV-resolved individuals	6p21.32	HLA-DPA1	rs3077-C	0.60	1E-9	(Clearance of HBV)	1.67	[1.43-2.0]	Affymetrix [597789]	N
617	chr6_qbl_hap6	4265472	4265473	rs3077	21750111	Mbarek H	2011-07-12	Hum Mol Genet	A genome-wide association study of chronic hepatitis B identified novel risk locus in a Japanese population.	Hepatitis B	458 Japanese ancestry cases, 2,056 Japanese ancestry controls	2,209 Japanese ancestry cases, 4,440 Japanese ancestry controls	6p21.32	HLA-DPA1	rs3077-G	0.60	2E-61		1.87	[1.73-2.01]	Illumina [423627]	N
617	chr6_qbl_hap6	4265870	4265871	rs79341334	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	6p21.32	NR	rs79341334-?	NR	4E-9	(MIC-A)	1.11932	[0.75-1.49] unit increase	Illumina [11901634] (imputed)	N
617	chr6_qbl_hap6	4266160	4266161	rs73739621	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (multivariate analysis)	477,968 European ancestry individuals	NA	6p21.32	HLA, DPA1	rs73739621-C	0.096	2E-10		0.05	[0.034-0.066] unit decrease	NR [NR] (imputed)	N
617	chr6_qbl_hap6	4266160	4266161	rs73739621	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (age of onset)	117,130 European ancestry individuals	NA	6p21.32	HLA-DPA1	rs73739621-C	0.096	4E-11		0.051	[0.035-0.067] unit decrease	NR [7647814] (imputed)	N
617	chr6_qbl_hap6	4266264	4266265	rs2301227	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	6p21.32	NR	rs2301227-A	NR	5E-6	(female)	0.1072	[0.061-0.153] unit decrease	Illumina [11133794] (imputed)	N
617	chr6_qbl_hap6	4266274	4266275	rs111789468	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	6p21.32	HLA-DPA1	rs111789468-?	NR	2E-13		1.092	[1.07-1.12]	Affymetrix [9000000] (imputed)	N
617	chr6_qbl_hap6	4266274	4266275	rs111789468	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	6p21.32	HLA-DPA1	rs111789468-T	NR	4E-6		1.082	[1.05-1.12]	Affymetrix [9000000] (imputed)	N
617	chr6_qbl_hap6	4267027	4267028	rs34596699	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	Systemic lupus erythematosus	1,639 East Asian ancestry cases, 2,410 East Asian ancestry controls	NA			rs34596699-T	NR	2E-8		0.2177	[0.14-0.29] unit increase	Illumina [NR] (imputed)	N
617	chr6_qbl_hap6	4267765	4267766	rs74292032	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6p21.32	HLA-DPA1	rs74292032-G	0.014974	1E-15		0.07435001	[0.056-0.093] unit decrease	Affymetrix [93095623] (imputed)	N
617	chr6_qbl_hap6	4272075	4272076	rs9277341	28029757	Merkel PA	2016-12-28	Arthritis Rheumatol	Identification of Functional and Expression Polymorphisms Associated With Risk for Antineutrophil Cytoplasmic Autoantibody-Associated Vasculitis.	Antineutrophil cytoplasmic antibody-associated vasculitis	1,015 European ancestry granulomatosis with polyangiitis cases, 206 European ancestry microscopic polyangiitis cases, 3,258 European ancestry controls.	541 European ancestry granulomatosis with polyangiitis cases, 30 European ancestry microscopic polyangiitis cases, 1,465 European ancestry controls.	6p21.32	HLA-DPA1	rs9277341-T	0.70	6E-71		2.44	2.21-2.69	Affymetrix [at least 333035] (imputed)	N
617	chr6_qbl_hap6	4272254	4272255	rs9277342	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	6p21.32	HLA-DPA1	rs9277342-T	0.21017	8E-10		0.017251292	[0.012-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
617	chr6_qbl_hap6	4272548	4272549	rs4345439	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Graves' disease	2,809 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	6p21.32		rs4345439-T	0.47048229	2E-67		0.48648387	[0.43-0.54] unit increase	Illumina [13429311] (imputed)	N
617	chr6_qbl_hap6	4273523	4273524	rs9357156	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Graves' disease	1,678 European ancestry cases, 456,942 European ancestry controls, 2,809 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	6p21.32		rs9357156-C	NR	1E-68		0.4396	[0.39-0.49] unit increase	Affymetrix, Illumina [25841587] (imputed)	N
617	chr6_qbl_hap6	4274184	4274185	rs2856830	30527956	Rhodes CJ	2018-12-05	Lancet Respir Med	Genetic determinants of risk in pulmonary arterial hypertension: international genome-wide association studies and meta-analysis.	Pulmonary arterial hypertension	2,085 European ancestry cases, 9,659 European ancestry controls	NA	6p21.32	HLA-DPA1, HLA-DPB1	rs2856830-C	0.12	8E-20		1.56	[1.42-1.71]	Illumina [~ 7727590] (imputed)	N
617	chr6_qbl_hap6	4275330	4275331	rs987870	21814517	Noguchi E	2011-07-21	PLoS Genet	Genome-wide association study identifies HLA-DP as a susceptibility gene for pediatric asthma in Asian populations.	Asthma	938 Japanese ancestry cases, 2,376 Japanese ancestry controls	1653 East Asian ancestry cases, 1453 East Asian ancestry controls	6p21.32	HLA, DPB1	rs987870-C	0.14	2E-10		1.4	[1.26-1.55]	Illumina [450326]	N
617	chr6_qbl_hap6	4275330	4275331	rs987870	21779181	Gorlova O	2011-07-14	PLoS Genet	Identification of novel genetic markers associated with clinical phenotypes of systemic sclerosis through a genome-wide association strategy.	Systemic sclerosis	2,296 European ancestry cases, 5,172 European ancestry controls	3,175 European ancestry cases, 4,210 European ancestry controls	6p21.32	HLA-DPA1, HLA-DPB1	rs987870-?	0.15	2E-20	(ATA positive)	2.09	[1.78-2.45]	Illumina [NR] (imputed)	N
617	chr6_qbl_hap6	4276465	4276466	rs115910061	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs115910061-T	0.059	5E-12		0.721	[0.63-0.81]	Illumina [11270530] (imputed)	N
617	chr6_qbl_hap6	4277443	4277444	rs6415133	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p21.32	NR	rs6415133-?	NR	6E-16		0.0994	[0.075-0.124] unit decrease	Illumina [at least 560000] (imputed)	N
617	chr6_qbl_hap6	4277711	4277712	rs2213309	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	6p21.32	NR	rs2213309-T	0.55	8E-7	(female)	0.1155	[0.07-0.161] unit increase	Illumina [11133794] (imputed)	N
617	chr6_qbl_hap6	4277956	4277957	rs2856816	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.32		rs2856816-T	0.908	5E-23				Affymetrix [10369434] (imputed)	N
617	chr6_qbl_hap6	4277956	4277957	rs2856816	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	6p21.32	HLA-DPB1, HLA-DPA1	rs2856816-C	0.092	2E-17		0.0523189	[0.04-0.064] unit decrease	Affymetrix [~ 2500000] (imputed)	N
617	chr6_qbl_hap6	4277956	4277957	rs2856816	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	6p21.32	HLA-DPB1, HLA-DPA1	rs2856816-C	0.092	7E-15		0.04810228	[0.036-0.06] unit decrease	Affymetrix [~ 2500000] (imputed)	N
617	chr6_qbl_hap6	4278154	4278155	rs7750458	27153935	Zhang CE	2016-05-06	J Dermatol	Variation at HLA-DPB1 is associated with dermatomyositis in Chinese population.	Dermatomyositis	127 Han Chinese ancestry case, 1,566 Han Chinese ancestry controls	NA	6p21.32	HLA-DPB1, HLA-DMB	rs7750458-A	0.09	1E-9		2.5	[1.80-3.44]	Illumina [812602]	N
617	chr6_qbl_hap6	4278155	4278156	rs56934772	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	6p21.32	HLA-DPB1	rs56934772-T	NR	5E-8		0.259632	[0.17-0.35] unit increase	Illumina [at least 950000] (imputed)	N
617	chr6_qbl_hap6	4278422	4278423	rs3135022	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	6p21.32	NR	rs3135022-A	NR	3E-6	(female)	0.1098	[0.064-0.156] unit decrease	Illumina [11133794] (imputed)	N
617	chr6_qbl_hap6	4279182	4279183	rs2021408	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.32		rs2021408-T	0.833	1E-17				Affymetrix [10369434] (imputed)	N
617	chr6_qbl_hap6	4279182	4279183	rs2021408	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.32		rs2021408-C	0.840557	3E-7		1.0296161	[1.02-1.04]	Affymetrix, Illumina [9851866] (imputed)	N
617	chr6_qbl_hap6	4279198	4279199	rs2856821	34450027	Boer CG	2021-08-24	Cell	Deciphering osteoarthritis genetics across 826,690 individuals from 9 populations.	Osteoarthritis of the hip or knee	88,842 European ancestry cases, 397,208 European ancestry controls, 899 Japanese ancestry cases, 3,396 Japanese ancestry controls	NA	6p21.32		rs2856821-T	0.7896	6E-9		1.0471791	[1.031089783-1.063519526]	Affymetrix, Illumina [NR] (imputed)	N
617	chr6_qbl_hap6	4279198	4279199	rs2856821	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Osteoarthritis	77,052 European ancestry cases, 378,169 European ancestry controls	NA	6p21.32	NR	rs2856821-T	0.79	1E-9		1.04	[1.03-1.06]	Affymetrix, Illumina [up to 17000000] (imputed)	N
617	chr6_qbl_hap6	4279208	4279209	rs3097670	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	6p21.32	HLA-DPA1	rs3097670-G	0.88	8E-12		1.064	[1.05-1.08]	Affymetrix, Illumina [8307659] (imputed)	N
617	chr6_qbl_hap6	4279487	4279488	rs1431403	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs1431403-T	0.39	1E-22		0.848	[0.81-0.88]	Illumina [11270530] (imputed)	N
617	chr6_qbl_hap6	4279922	4279923	rs3135024	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Aspartate aminotransferase levels	386,570 British ancestry individuals, 10,617 Asian or Asian British individuals, 7,426 Black or Black British individuals, 2,321 Chinese ancestry individuals	NA	6p21.32	HLA-DPB1	rs3135024-?	NR	8E-24		0.0034	[0.0028-0.004] unit increase	Affymetrix [21347608] (imputed)	N
617	chr6_qbl_hap6	4279922	4279923	rs3135024	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Alanine aminotransferase levels	387,859 British ancestry individuals, 10,635 Asian or Asian British individuals, 7,468 Black or Black British individuals, 2,338 Chinese ancestry individuals	NA	6p21.32	HLA-DPB1	rs3135024-?	NR	3E-10		0.0034	[0.0024-0.0044] unit increase	Affymetrix [21347608] (imputed)	N
617	chr6_qbl_hap6	4279922	4279923	rs3135024	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DPA1, HLA-DPB1, RPL32P1	rs3135024-C	NR	2E-8		0.0184048	[0.012-0.025] unit decrease	Affymetrix [321016] (imputed)	N
617	chr6_qbl_hap6	4280068	4280069	rs3097671	34197731	Li Q	2021-06-23	Am J Hum Genet	Whole-exome sequencing reveals common and rare variants in immunologic and neurological genes implicated in achalasia.	Idiopathic achalasia	280 Chinese Han ancestry cases, 1,121 Chinese Han ancestry controls	NA	6p21.32		rs3097671-C	0.102	3E-7		2.29	[1.67-3.15]	Illumina [476650] (imputed)	N
617	chr6_qbl_hap6	4280558	4280559	rs3130169	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs3130169-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
617	chr6_qbl_hap6	4280916	4280917	rs12722013	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	HLA-DPB1	rs12722013-C	0.049	1E-15	(C-C motif chemokine 21, CCL21.2516.57.3)	0.45	[0.33-0.57] unit increase	Affymetrix [10572788] (imputed)	N
617	chr6_qbl_hap6	4280922	4280923	rs1126511	34197731	Li Q	2021-06-23	Am J Hum Genet	Whole-exome sequencing reveals common and rare variants in immunologic and neurological genes implicated in achalasia.	Idiopathic achalasia	100 Chinese Han ancestry cases, 313 Chinese Han ancestry controls	230 Chinese Han ancestry cases, 1,760 Chinese Han ancestry controls	6p21.32		rs1126511-T	0.181	2E-9		1.83		Illumina [192329]	N
617	chr6_qbl_hap6	4280994	4280995	rs9277348	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hypothyroidism	1,114 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	6p21.32		rs9277348-C	0.428105722	8E-16		0.3692923	[0.28-0.46] unit increase	Illumina [13429045] (imputed)	N
617	chr6_qbl_hap6	4281062	4281063	rs1042133	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	6p21.32	HLA-DPB1	rs1042133-C	0.15836	8E-32		0.036145743	[0.03-0.042] unit increase	Affymetrix [93095623] (imputed)	N
617	chr6_qbl_hap6	4281062	4281063	rs1042133	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	6p21.32	HLA-DPB1	rs1042133-C	0.1567	3E-12		0.03465061	[0.025-0.044] unit increase	Affymetrix [~ 2500000] (imputed)	N
617	chr6_qbl_hap6	4281117	4281118	rs1042151	32004448	Savage SA	2020-01-30	Am J Hum Genet	Genome-wide Association Study Identifies HLA-DPB1 as a Significant Risk Factor for Severe Aplastic Anemia.	Severe aplastic anemia	359 European ancestry cases, 1,396 European ancestry controls	175 European ancestry cases, 1,059 European ancestry controls	6p21.32	HLA-DPB1	rs1042151-?	NR	2E-13		1.75	[1.50-2.03]	Illumina [688067]	N
617	chr6_qbl_hap6	4281117	4281118	rs1042151	23180272	Park BL	2012-11-21	Hum Genet	Genome-wide association study of aspirin-exacerbated respiratory disease in a Korean population.	Aspirin exacerbated respiratory disease in asthmatics	117 Korean ancestry cases, 685 Korean ancestry controls	142 Korean ancestry cases, 996 Korean ancestry controls	6p21.32	HLA-DPB1	rs1042151-G	0.083	5E-7		2.4	[1.68-3.42]	Illumina [430486]	N
617	chr6_qbl_hap6	4281145	4281145	rs141530233	28029757	Merkel PA	2016-12-28	Arthritis Rheumatol	Identification of Functional and Expression Polymorphisms Associated With Risk for Antineutrophil Cytoplasmic Autoantibody-Associated Vasculitis.	Antineutrophil cytoplasmic antibody-associated vasculitis	1,015 European ancestry granulomatosis with polyangiitis cases, 206 European ancestry microscopic polyangiitis cases, 3,258 European ancestry controls.	541 European ancestry granulomatosis with polyangiitis cases, 30 European ancestry microscopic polyangiitis cases, 1,465 European ancestry controls.	6p21.32	HLA-DPB1	rs141530233-?	0.7	1E-89		2.99	[2.69-3.33]	Affymetrix [at least 333035] (imputed)	N
617	chr6_qbl_hap6	4281150	4281151	rs9277356	31243853	Chung S	2019-06-27	J Viral Hepat	GWAS identifying HLA-DPB1 gene variants associated with responsiveness to hepatitis B virus vaccination in Koreans: Independent association of HLA-DPB1*04:02 possessing rs1042169 G - rs9277355 C - rs9277356 A.	Response to hepatitis B vaccine	1,760 Korean ancestry non-responder adults, 5,107 Korean ancestry responder adults	2,327 Korean ancestry adults, 49 Korean ancestry non-responder infants, 234 Korean ancestry responder infants	6p21.32	HLA-DPB1	rs9277356-A	0.4716	7E-31	(Adults)	1.474164	[1.38-1.574]	Affymetrix [345072]	N
617	chr6_qbl_hap6	4281377	4281378	rs7770370	32573827	Huang YH	2020-06-23	Aliment Pharmacol Ther	Large-scale genome-wide association study identifies HLA class II variants associated with chronic HBV infection: a study from Taiwan Biobank.	Chronic hepatitis B infection	1,810 East Asian cases, 9,002 East Asian seropositive controls	648 East Asian cases, 3,190 East Asian seropositive controls	6p21.32	NR	rs7770370-G	0.5739	3E-35		1.6393442	[1.52-1.79]	Affymetrix [583383]	N
617	chr6_qbl_hap6	4281730	4281731	rs2856827	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip	15 Asian ancestry cases, 13 European ancestry cases, 15 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	6p21.32	NR	rs2856827-?	NR	4E-6		3.87	[2.88-5.2]	Illumina [539000] (imputed)	N
617	chr6_qbl_hap6	4282119	4282120	rs9501251	28425483	Qiu F	2017-04-20	Nat Commun	A genome-wide association study identifies six novel risk loci for primary biliary cholangitis.	Primary biliary cholangitis	1,122 Han Chinese ancestry cases, 4,036 Han Chinese ancestry controls	907 Han Chinese ancestry cases, 2,127 Han Chinese ancestry controls	6p21.32	HLA-DPB1	rs9501251-G	0.044	2E-22		2.01	[1.76-2.32]	Illumina [776516]	N
617	chr6_qbl_hap6	4282182	4282183	rs7772134	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.32		rs7772134-G	0.899	5E-45				Affymetrix [10369434] (imputed)	N
617	chr6_qbl_hap6	4282735	4282736	rs9277378	27595289	Goyal RK	2016-09-05	Bone Marrow Transplant	Novel HLA-DP region susceptibility loci associated with severe acute GvHD.	Acute graft versus host disease in bone marrow transplantation (recipient effect)	291 European ancestry recipients with acute graft versus host disease, 288 European ancestry recipients without acute graft versus host disease	NA	6p21.32	HLA-DPB1	rs9277378-?		2E-9				Affymetrix [905761]	N
617	chr6_qbl_hap6	4282735	4282736	rs9277378	27470079	Li Z	2016-07-25	Lancet Oncol	Genetic risk of extranodal natural killer T-cell lymphoma: a genome-wide association study.	Extranodal natural killer T-cell lymphoma (nasal type)	189 East Asian ancestry cases, 957 East Asian ancestry controls	514 East Asian ancestry cases, 5,822 East Asian ancestry controls	6p21.32	HLA-DPB1	rs9277378-A	0.29	4E-19		1.84	[1.61-2.11]	Illumina [477644] (imputed)	N
617	chr6_qbl_hap6	4284353	4284353	rs142975055	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic hepatitis B infection	145 European ancestry cases, 351,740 European ancestry controls, 2,234 East Asian ancestry cases, 169,588 East Asian ancestry controls	NA	6p21.32		rs142975055-GAAATA	NR	1E-44		0.4385	[0.38-0.5] unit increase	Affymetrix, Illumina [20457334] (imputed)	N
617	chr6_qbl_hap6	4285804	4285805	rs9277464	29534301	Nishida N	2018-03-13	Hepatology	Key HLA-DRB1-DQB1 haplotypes and role of the BTNL2 gene for response to a hepatitis B vaccine.	Response to hepatitis B vaccine	107 Japanese ancestry low responder individuals, 351 Japanese ancestry intermediate responder individuals, 735 Japanese ancestry high responder individuals	NA	6p21.32	HLA-DPB1	rs9277464-?		7E-11		0.175	unit decrease	Affymetrix [427664]	N
617	chr6_qbl_hap6	4287313	4287314	rs9277535	27244555	Li Y	2016-05-31	Nat Commun	Genome-wide association study identifies 8p21.3 associated with persistent hepatitis B virus infection among Chinese.	Persistent hepatitis B virus infection	1,251 Chinese ancestry persistently infected cases, 1,057 Chinese ancestry spontaneously recovered controls	3,905 Chinese ancestry persistently infected cases, 3,356 Chinese ancestry spontaneously recovered controls	6p21.32	HLA-DPB1	rs9277535-A		4E-6		1.45	[1.23-1.69]	Affymetrix, Illumina [up to 4494311] (imputed)	N
617	chr6_qbl_hap6	4287313	4287314	rs9277535	25802187	Jiang DK	2015-04-28	Hepatology	Genetic variants in five novel loci including CFB and CD40 predispose to chronic hepatitis B.	Chronic hepatitis B infection	2,514 Chinese ancestry cases, 1,130 Chinese ancestry controls	6,600 Chinese ancestry cases, 8,127 Chinese ancestry controls	6p21.32	HLA-DPB1	rs9277535-A	0.58	1E-70		1.52	[1.45-1.59]	Illumina [3680900] (imputed)	N
617	chr6_qbl_hap6	4287313	4287314	rs9277535	24940741	Chang SW	2014-06-18	PLoS One	A genome-wide association study on chronic HBV infection and its clinical progression in male Han-Taiwanese.	Chronic hepatitis B infection	321 Chinese ancestry cases, 304 Chinese ancestry controls	1,302 Chinese ancestry cases, 761 Chinese ancestry controls	6p21.32	HLA-DPB1	rs9277535-G	0.251	5E-14		1.59	[1.41-1.79]	Illumina [456262]	N
617	chr6_qbl_hap6	4287313	4287314	rs9277535	23760081	Kim YJ	2013-06-10	Hum Mol Genet	A genome-wide association study identified new variants associated with the risk of chronic hepatitis B.	Chronic hepatitis B infection	400 Korean ancestry cases, 1,000 Korean ancestry controls	971 Korean ancestry cases, 1,938 Korean ancestry controls	6p21.32	HLA-DP	rs9277535-?	NR	4E-40		1.89	[1.72-2.08]	Illumina [719265]	N
617	chr6_qbl_hap6	4287313	4287314	rs9277535	22737229	Nishida N	2012-06-21	PLoS One	Genome-wide association study confirming association of HLA-DP with protection against chronic hepatitis B and viral clearance in Japanese and Korean.	Hepatitis B (viral clearance)	181 East Asian ancestry HBV carriers, 184 East Asian ancestry controls, 185 East Asian ancestry spontaneously HBV-resolved individuals	Up to 8,045 East Asian ancestry HBV carriers, up to 9,003 East Asian ancestry controls, up to 3,995 East Asian ancestry spontaneously HBV-resolved individuals	6p21.32	HLA-DPB1	rs9277535-G	0.57	2E-21	(Protective effects against CHB)	1.64	[1.47-1.82]	Affymetrix [597789]	N
617	chr6_qbl_hap6	4287313	4287314	rs9277535	22737229	Nishida N	2012-06-21	PLoS One	Genome-wide association study confirming association of HLA-DP with protection against chronic hepatitis B and viral clearance in Japanese and Korean.	Hepatitis B (viral clearance)	181 East Asian ancestry HBV carriers, 184 East Asian ancestry controls, 185 East Asian ancestry spontaneously HBV-resolved individuals	Up to 8,045 East Asian ancestry HBV carriers, up to 9,003 East Asian ancestry controls, up to 3,995 East Asian ancestry spontaneously HBV-resolved individuals	6p21.32	HLA-DPB1	rs9277535-G	0.57	2E-17	(Clearance of HBV)	1.52	[1.37-1.67]	Affymetrix [597789]	N
617	chr6_qbl_hap6	4287313	4287314	rs9277535	21764829	Png E	2011-07-15	Hum Mol Genet	A genome-wide association study of hepatitis B vaccine response in an Indonesian population reveals multiple independent risk variants in the HLA region.	Hepatitis B vaccine response	1,683 Indonesian ancestry individuals	1,931 Indonesian ancestry individuals	6p21.32	HLA-DPB1	rs9277535-?	NR	3E-12		1.39	[1.23-1.59]	Illumina [455508]	N
617	chr6_qbl_hap6	4287313	4287314	rs9277535	21750111	Mbarek H	2011-07-12	Hum Mol Genet	A genome-wide association study of chronic hepatitis B identified novel risk locus in a Japanese population.	Hepatitis B	458 Japanese ancestry cases, 2,056 Japanese ancestry controls	2,209 Japanese ancestry cases, 4,440 Japanese ancestry controls	6p21.32	HLA-DPB1	rs9277535-G	0.57	3E-54		1.77	[1.65-1.91]	Illumina [423627]	N
617	chr6_qbl_hap6	4287313	4287314	rs9277535	19349983	Kamatani Y	2009-04-06	Nat Genet	A genome-wide association study identifies variants in the HLA-DP locus associated with chronic hepatitis B in Asians.	Hepatitis B	179 Japanese ancestry cases, 934 Japanese ancestry controls	1,599 Japanese ancestry cases, 2,821 Japanese ancestry controls, 308 Thai ancestry cases, 546 Thai ancestry controls	6p21.32	HLA-DPB1	rs9277535-G		6E-39		1.75	[1.61-1.92]	Illumina [499544]	N
617	chr6_qbl_hap6	4287550	4287551	rs9501255	28077804	Ben-Avraham D	2017-01-10	Aging (Albany NY)	The complex genetics of gait speed: genome-wide meta-analysis approach.	Gait speed in old age	31,478 European ancestry older adults	2,588 European ancestry older adults	6p21.32	HLA-DPB1	rs9501255-T	NR	3E-7		0.0244	[0.015-0.034] m/sec increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
617	chr6_qbl_hap6	4287699	4287700	rs9277542	33736632	Zeng Z	2021-03-18	BMC Med Genomics	Genome-wide association study identifies new loci associated with risk of HBV infection and disease progression.	Persistent hepatitis B virus infection	587 Chinese ancestry persistent cases, 275 Chinese ancestry clearance controls	NA	6p21.32	HLA-DPB1	rs9277542-T	0.5347	2E-8		0.5353	NR	Affymetrix [607153]	N
617	chr6_qbl_hap6	4287699	4287700	rs9277542	33736632	Zeng Z	2021-03-18	BMC Med Genomics	Genome-wide association study identifies new loci associated with risk of HBV infection and disease progression.	Hepatitis B	460 Chinese ancestry cases, 169 Chinese ancestry controls	NA	6p21.32	HLA-DPB1	rs9277542-?	NR	2E-9				Affymetrix [607153]	N
617	chr6_qbl_hap6	4287871	4287872	rs9277549	29534301	Nishida N	2018-03-13	Hepatology	Key HLA-DRB1-DQB1 haplotypes and role of the BTNL2 gene for response to a hepatitis B vaccine.	Response to hepatitis B vaccine	107 Japanese ancestry low responder individuals, 351 Japanese ancestry intermediate responder individuals, 735 Japanese ancestry high responder individuals	NA	6p21.32	HLA-DPB2	rs9277549-?		6E-11		0.175	unit decrease	Affymetrix [427664]	N
617	chr6_qbl_hap6	4287953	4287954	rs9277552	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Osteoarthritis of the hip or knee	39,427 European ancestry cases, 378,169 European ancestry controls	NA	6p21.32	NR	rs9277552-C	0.79	2E-10		1.06	[1.04-1.08]	Affymetrix, Illumina [up to 17000000] (imputed)	N
617	chr6_qbl_hap6	4287953	4287954	rs9277552	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Knee osteoarthritis	24,955 European ancestry cases, 378,169 European ancestry controls	NA	6p21.32	NR	rs9277552-C	0.79	2E-8		1.07	[1.04-1.09]	Affymetrix, Illumina [up to 17000000] (imputed)	N
617	chr6_qbl_hap6	4287990	4287991	rs9277554	28076899	Taylor KE	2017-01-11	Arthritis Rheumatol	Genome-Wide Association Analysis Reveals Genetic Heterogeneity of Sjogren's Syndrome According to Ancestry.	Sjogren's syndrome	460 Asian ancestry cases, 1125 Asian ancestry controls	NA	6p21.32	HLA-DPB1	rs9277554-?		3E-7		1.65	[1.37-2.00]	Illumina [302688]	N
617	chr6_qbl_hap6	4287990	4287991	rs9277554	23740775	Xie G	2013-09-01	Arthritis Rheum	Association of granulomatosis with polyangiitis (Wegener's) with HLA-DPB1*04 and SEMA6A gene variants: evidence from genome-wide analysis.	Wegener's granulomatosis	459 European ancestry cases, 1,503 European ancestry controls	291 European ancestry cases, 317 European ancestry controls	6p21.32	HLA-DOA, HSD17B8, RING1, COL11A2, RXRB, HLA-DPB1*04, HLA-DPB1, HLA-DPB2	rs9277554-C	0.708	2E-50		4.17	[3.33-5.00]	Illumina [287802]	N
617	chr6_qbl_hap6	4288057	4288058	rs9277555	24586183	Medici M	2014-02-27	PLoS Genet	Identification of novel genetic Loci associated with thyroid peroxidase antibodies and clinical thyroid disease.	Thyroid peroxidase antibody levels	12,353 European ancestry individuals	8,159 European ancestry individuals	6p21.32	NR	rs9277555-G		6E-7		0.0199	[0.010-0.030] unit increase	Affymetrix, Illumina [up to 3437411] (imputed)	N
617	chr6_qbl_hap6	4288117	4288120	rs148969528	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p21.32	HLA-DPB1, HLA-DPA2	rs148969528-A	0.178395	3E-15		0.022868847	[0.017-0.029] unit increase	Affymetrix [93095623] (imputed)	N
617	chr6_qbl_hap6	4288117	4288120	rs148969528	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	6p21.32	HLA-DPB1, HLA-DPA2	rs148969528-A	0.178377	1E-17		0.024778191	[0.019-0.03] unit increase	Affymetrix [93095623] (imputed)	N
617	chr6_qbl_hap6	4288549	4288550	rs3128967	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6p21.32	NR	rs3128967-T	0.90959	2E-12		1.0504202	[1.04-1.06]	Affymetrix [15688218] (imputed)	N
617	chr6_qbl_hap6	4289214	4289215	rs9277562	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic hepatitis B infection	2,234 East Asian ancestry cases, 169,588 East Asian ancestry controls	NA	6p21.32		rs9277562-T	0.575524651	5E-45		0.44033504	[0.38-0.5] unit increase	Illumina [13428705] (imputed)	N
617	chr6_qbl_hap6	4291326	4291327	rs2179920	27501781	Shiraishi K	2016-08-09	Nat Commun	Association of variations in HLA class II and other loci with susceptibility to EGFR-mutated lung adenocarcinoma.	EGFR mutation-positive lung adenocarcinoma	663 Japanese ancestry cases, 4,367 Japanese ancestry controls	2,510 Japanese ancestry cases, 10,791 Japanese ancestry controls	6p21.32	HLA-DPB1	rs2179920-A	0.165	5E-17		1.36	[1.27-1.47]	Illumina [NR] (imputed)	N
617	chr6_qbl_hap6	4292570	4292571	rs2281388	31050781	Zhao SX	2019-05-03	JAMA Netw Open	Assessment of Molecular Subtypes in Thyrotoxic Periodic Paralysis and Graves Disease Among Chinese Han Adults: A Population-Based Genome-Wide Association Study.	Thyrotoxic hypokalemic periodic paralysis and Graves disease	171 Han Chinese ancestry cases, 2,160 Han Chinese ancestry controls	362 Han Chinese ancestry cases, 1,089 Han Chinese ancestry controls	6p21.32	HLA-DPB1, COL11A2	rs2281388-?	0.33	2E-18		1.74	[1.54-1.98]	Illumina [2752055] (imputed)	N
617	chr6_qbl_hap6	4292570	4292571	rs2281388	21841780	Chu X	2011-08-14	Nat Genet	A genome-wide association study identifies two new risk loci for Graves' disease.	Graves' disease	1,468 Chinese ancestry cases, 1,490 Chinese ancestry controls	3,994 Chinese ancestry cases, 3,510 Chinese ancestry controls	6p21.32	HLA, DPB1	rs2281388-T	0.32	2E-65		1.64	[1.55-1.74]	Illumina [486049]	N
617	chr6_qbl_hap6	4293274	4293275	rs6928954	20639394	Kang TW	2010-07-16	Hum Mol Genet	Genome-wide association of serum bilirubin levels in Korean population.	Bilirubin levels	8,841 Korean ancestry individuals	1,096 Korean ancestry individuals	6p21.32	intergenic	rs6928954-?	0.023	1E-6		0.075	[NR] bilirubin level increase	Affymetrix [1227049] (imputed)	N
617	chr6_qbl_hap6	4293322	4293323	rs2295119	32912934	Li M	2020-09-10	J Am Soc Nephrol	Genome-Wide Meta-Analysis Identifies Three Novel Susceptibility Loci and Reveals Ethnic Heterogeneity of Genetic Susceptibility for IgA Nephropathy.	IgA nephropathy	2,628 Chinese ancestry cases, 11,563 Chinese ancestry controls	6,879 Han Chinese ancestry cases, 9,019 Han Chinese ancestry controls, 1,039 Italian ancestry cases, 1,289 Italian ancestry controls	6p21.32	DPA1.DPB2	rs2295119-T	0.22960427086396265	3E-14	(East Asian)	1.3605813	[1.25664462393162-1.47311444258073]	NR [3611808] (imputed)	N
617	chr6_qbl_hap6	4293322	4293323	rs2295119	29784950	Sawai H	2018-05-21	Sci Rep	Genome-wide association study identified new susceptible genetic variants in HLA class I region for hepatitis B virus-related hepatocellular carcinoma.	Hepatocellular carcinoma in hepatitis B infection	473 Japanese ancestry chronic hepatitis and hepatocellular carcinoma cases, 516 Japanese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma	153 Japanese ancestry chronic hepatitis and hepatocellular carcinoma cases, 614 Japanese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma, 94 Chinese ancestry chronic hepatitis and hepatocellular carcinoma cases, 187 Chinese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma, 185 Thai ancestry chronic hepatitis and hepatocellular carcinoma cases, 198 Thai ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma	6p21.32	HLA	rs2295119-?	NR	6E-7	(Japanese)	1.59	[1.32-1.89]	Affymetrix [447830]	N
617	chr6_qbl_hap6	4293322	4293323	rs2295119	29784950	Sawai H	2018-05-21	Sci Rep	Genome-wide association study identified new susceptible genetic variants in HLA class I region for hepatitis B virus-related hepatocellular carcinoma.	Hepatocellular carcinoma in hepatitis B infection	473 Japanese ancestry chronic hepatitis and hepatocellular carcinoma cases, 516 Japanese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma	153 Japanese ancestry chronic hepatitis and hepatocellular carcinoma cases, 614 Japanese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma, 94 Chinese ancestry chronic hepatitis and hepatocellular carcinoma cases, 187 Chinese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma, 185 Thai ancestry chronic hepatitis and hepatocellular carcinoma cases, 198 Thai ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma	6p21.32	HLA	rs2295119-?	NR	5E-7		1.5873016	[1.32-1.89] Japanese	Affymetrix [447830]	N
617	chr6_qbl_hap6	4293681	4293682	rs3130189	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.32		rs3130189-T	0.829	9E-13				Affymetrix [10369434] (imputed)	N
617	chr6_qbl_hap6	4302019	4302020	rs3117245	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs3117245-C	NR	8E-9		1.174	[1.112-1.24]	Affymetrix [7846216] (imputed)	N
617	chr6_qbl_hap6	4302345	4302346	rs3117242	22808956	Lyons PA	2012-07-19	N Engl J Med	Genetically distinct subsets within ANCA-associated vasculitis.	Antineutrophil cytoplasmic antibody-associated vasculitis	914 European ancestry cases, 5,259 European ancestry controls	1,454 European ancestry cases, 1,666 European ancestry controls	6p21.32	HLA-DP, COL11A2	rs3117242-?	NR	1E-71		3.67	[NR]	Affymetrix [NR]	N
617	chr6_qbl_hap6	4303482	4303482	rs559242105	33143745	Andlauer TFM	2020-11-04	BMC Med	Treatment- and population-specific genetic risk factors for anti-drug antibodies against interferon-beta: a GWAS.	Neutralising antibody response to interferon beta therapy in multiple sclerosis (presence of antibodies; IFN?-1b subcutaneous)	up to 2,000 German and Swedish ancestry individuals	up to 757 German and Swedish ancestry individuals	6p21.32		rs559242105-TA	0.18	1E-8	(conditional on rs28366299)	0.85	[-0.56--1.14] unit decrease	Illumina [8550834] (imputed)	N
617	chr6_qbl_hap6	4303482	4303482	rs559242105	33143745	Andlauer TFM	2020-11-04	BMC Med	Treatment- and population-specific genetic risk factors for anti-drug antibodies against interferon-beta: a GWAS.	Neutralising antibody response to interferon beta therapy in multiple sclerosis (antibody titre; IFN?-1b subcutaneous)	up to 2,000 German and Swedish ancestry individuals	up to 757 German and Swedish ancestry individuals	6p21.32		rs559242105-TA	0.18	5E-10	(conditional on rs9272775)	0.28	[-0.18--0.38] unit decrease	Illumina [8550834] (imputed)	N
617	chr6_qbl_hap6	4303776	4303777	rs3128923	33736632	Zeng Z	2021-03-18	BMC Med Genomics	Genome-wide association study identifies new loci associated with risk of HBV infection and disease progression.	Hepatitis B	460 Chinese ancestry cases, 169 Chinese ancestry controls	NA	6p21.32	HLA-DPA2	rs3128923-?	NR	2E-6				Affymetrix [607153]	N
617	chr6_qbl_hap6	4304626	4304627	rs4282438	24097066	Li Y	2013-10-06	Nat Genet	A genome-wide association study in Han Chinese identifies a susceptibility locus for primary Sjogren's syndrome at 7q11.23.	Sjogren's syndrome	542 Han Chinese ancestry cases, 1,050 Han Chinese ancestry controls	1,303 Han Chinese ancestry cases, 2,727 Han Chinese ancestry controls	6p21.32	COL11A2, HLA-DPB1, HLA-DPA1	rs4282438-G	0.3546	9E-25		1.58	[1.45-1.72]	Affymetrix [556134]	N
617	chr6_qbl_hap6	4304626	4304627	rs4282438	23817570	Shi Y	2013-06-30	Nat Genet	A genome-wide association study identifies two new cervical cancer susceptibility loci at 4q12 and 17q12.	Cervical cancer	Up to 1,364 Han Chinese ancestry cases, up to 3,028 Han Chinese ancestry controls	4,167 Han Chinese ancestry cases, 7,196 Han Chinese ancestry controls	6p21.32	HLA-DPB2	rs4282438-?	0.56	5E-27	(Stringently Matched)	1.35	[1.27-1.41]	Affymetrix [563339]	N
617	chr6_qbl_hap6	4304694	4304695	rs2064479	31044621	Rimpela JM	2019-05-02	Blood Press	Genome-wide association study of white-coat effect in hypertensive patients.	White coat effect (clinic diastolic blood pressure minus ambulatory diastolic blood pressure)	206 Finnish ancestry individuals	NA	6p21.32	HLA-DPB1	rs2064479-A	0.26	5E-6		2.4	[1.42-3.38] unit increase	Illumina [629414]	N
617	chr6_qbl_hap6	4307897	4307898	rs910320	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.32	Intergenic	rs910320-?		8E-8		1.05	[1.03-1.07]	Illumina [7645193] (imputed)	N
617	chr6_qbl_hap6	4308120	4308121	rs3128930	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p21.32	HLA-DPA1	rs3128930-C	0.683	7E-6		0.053	[0.029-0.077] unit increase	Affymetrix, Illumina [7374092] (imputed)	N
617	chr6_qbl_hap6	4308544	4308545	rs872956	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.32	Intergenic	rs872956-?		8E-8		1.58	[1.34-1.86]	Illumina [7645193] (imputed)	N
617	chr6_qbl_hap6	4308606	4308609	rs57746686	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cervical cancer	967 East Asian ancestry cases, 60,614 East Asian ancestry controls	NA	6p21.32		rs57746686-G	0.159023897	1E-9		0.38955024	[0.26-0.52] unit increase	Illumina [13381745] (imputed)	N
617	chr6_qbl_hap6	4310617	4310618	rs3130218	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cervical cancer	6,563 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs3130218-A	NR	5E-9		1.16171	NR	Affymetrix [7846216] (imputed)	N
617	chr6_qbl_hap6	4314720	4314721	rs9277630	34246321	Fukunaga K	2021-07-10	Am J Hum Genet	Genome-wide association study reveals an association between the HLA-DPB1<sup>*</sup>02:01:02 allele and wheat-dependent exercise-induced anaphylaxis.	Wheat-dependent exercise-induced anaphylaxis	77 Japanese ancestry cases, 924 Japanese ancestry controls	91 Japanese ancestry cases, 435 Japanese ancestry controls	6p21.32		rs9277630-A	0.26	1E-11		3.53	[2.45-5.09]	Illumina [3891096] (imputed)	N
617	chr6_qbl_hap6	4314761	4314762	rs733208	24722205	Kwak SH	2014-04-17	Hum Mol Genet	A genome-wide association study on thyroid function and anti-thyroid peroxidase antibodies in Koreans.	Thyroid peroxidase antibody positivity	377 Korean ancestry cases, 3,019 Korean ancestry anti-TPO controls	108 Korean ancestry cases, 734 Korean ancestry controls	6p21.32	HLA-DPB2	rs733208-A	0.30	4E-7		1.435	[1.30-1.57]	Affymetrix [1418709] (imputed)	N
617	chr6_qbl_hap6	4314965	4314966	rs9277636	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	6p21.32	NR	rs9277636-G	0.153	3E-8		0.0105227	[0.0068-0.0143] unit increase	NR [~ 9732723] (imputed)	N
617	chr6_qbl_hap6	4317911	4317912	rs139394070	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	6p21.32		rs139394070-?	NR	5E-8				Affymetrix [NR] (imputed)	N
617	chr6_qbl_hap6	4318740	4318741	rs3117035	20031603	Marroni F	2009-08-01	Circ Cardiovasc Genet	A genome-wide association scan of RR and QT interval duration in 3 European genetically isolated populations: the EUROSPAN project.	RR interval (heart rate)	2,325 European ancestry individuals	NA	6p21.32	intergenic	rs3117035-A	0.48	1E-6		0.14	[0.08-0.20] unit decrease	Illumina [~ 318327]	N
617	chr6_qbl_hap6	4318939	4318940	rs1883414	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	6p21.32	HLA-DPB2, HLA-DPB1, HLA-DPA1	rs1883414-G	0.68	2E-11		1.22	[NR]	Illumina [> 1000000] (imputed)	N
617	chr6_qbl_hap6	4318939	4318940	rs1883414	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	6p21.32	HLA-DPB1, HLA-DPA1, HLA-DPB2	rs1883414-G	0.68	5E-7	(EA)	1.2	[NR]	Illumina [> 1000000] (imputed)	N
617	chr6_qbl_hap6	4318939	4318940	rs1883414	21399633	Gharavi AG	2011-03-13	Nat Genet	Genome-wide association study identifies susceptibility loci for IgA nephropathy.	Nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls	712 Han Chinese ancestry cases, 748 Han Chinese ancestry controls, 1,238 European ancestry cases, 1,172 European ancestry controls	6p21.32	HLA-DPA1, HLA-DPB1, HLA-DPB2	rs1883414-?	0.67 (EA)	5E-9		1.28	[NR]	Illumina [498322]	N
617	chr6_qbl_hap6	4320586	4320587	rs115311892	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein COL11A2	5,366 Icelandic ancestry individuals	NA	6p21.32		rs115311892-T	0.01149	1E-16		0.748771	[0.57-0.93] unit increase	Illumina [7506463] (imputed)	N
617	chr6_qbl_hap6	4322126	4322127	rs3117027	23482656	Chen D	2013-03-12	J Natl Cancer Inst	Genome-wide association study of susceptibility loci for cervical cancer.	Cervical cancer	1,034 European ancestry cases, 3,948 European ancestry controls	1,140 European ancestry cases, 1,058 European ancestry controls	6p21.32	HLA-DPB2	rs3117027-?	NR	1E-7		1.25	[1.15-1.36]	Illumina [632668]	N
618	chr6_qbl_hap6	4328876	4328877	rs117232140	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	6p21.32	HLA-DPB2	rs117232140-?	NR	7E-9		0.096564196	[0.064-0.129] unit decrease	Illumina [27896057] (imputed)	N
618	chr6_qbl_hap6	4328877	4328878	rs3117006	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma and attention deficit hyperactivity disorder	46,802 European ancestry asthma cases, 19,099 European ancestry attention deficit hyperactivity disorder cases, 381,675 European ancestry controls	NA	6p21.32	HLA-DPB2	rs3117006-?	NR	3E-8				Affymetrix [up to 8274727] (imputed)	N
618	chr6_qbl_hap6	4328877	4328878	rs3117006	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma (childhood onset)	9,676 European ancestry cases, 347,481 European ancestry controls	NA	6p21.32	HLA-DPB2	rs3117006-?	NR	2E-6		0.0766984	[0.044-0.109] unit increase	Affymetrix [8274727] (imputed)	N
618	chr6_qbl_hap6	4329591	4329592	rs3129270	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs3129270-T	NR	1E-7		1.1494253	[1.09-1.21]	Affymetrix [7846216] (imputed)	N
618	chr6_qbl_hap6	4329782	4329783	rs3129269	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	6p21.32	HLA-DPB2, HLA-DPB1, HLA-DPA1	rs3129269-C	NR	5E-7	(East Asian)	1.29	[NR]	Illumina [> 1000000] (imputed)	N
618	chr6_qbl_hap6	4330219	4330220	rs3116995	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.32	NR	rs3116995-?	NR	6E-9				Affymetrix [~ 8270000] (imputed)	N
618	chr6_qbl_hap6	4330512	4330513	rs6901830	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	6p21.32	HCG24	rs6901830-G	0.847121	1E-19		1.0788485	[1.0613158162383-1.09667081279089]	NR [9572556] (imputed)	N
618	chr6_qbl_hap6	4330737	4330738	rs9277768	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hashimoto thyroiditis	537 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	6p21.32		rs9277768-T	0.335380575	4E-10		0.4089919	[0.28-0.54] unit increase	Illumina [13428945] (imputed)	N
618	chr6_qbl_hap6	4330764	4330765	rs9277769	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.32		rs9277769-C	0.368	4E-12				Affymetrix [10369434] (imputed)	N
618	chr6_qbl_hap6	4330965	4330966	rs3116994	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.32		rs3116994-G	0.461	2E-9				Affymetrix [10369434] (imputed)	N
618	chr6_qbl_hap6	4330965	4330966	rs3116994	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs3116994-A	0.548	6E-12	(Collagen alpha-2(XI) chain, COL11A2.11278.4.3)	0.17	[0.13-0.21] unit increase	Affymetrix [10572788] (imputed)	N
618	chr6_qbl_hap6	4331706	4331707	rs3116989	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma onset (childhood vs adult)	13,962 European ancestry childhood onset cases, 14,873 European ancestry adult onset cases	31,002 European ancestry childhood onset cases, 16,297 European ancestry adult onset cases	6p21.32	COL11A2, HLA-DPB2	rs3116989-G	0.867	4E-6		1.073	[1.04-1.1]	Affymetrix [9000000] (imputed)	N
618	chr6_qbl_hap6	4331706	4331707	rs3116989	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	6p21.32	HLA-DPB2, COL11A2	rs3116989-?	NR	3E-17		1.096	[1.07-1.12]	Affymetrix [9000000] (imputed)	N
618	chr6_qbl_hap6	4331706	4331707	rs3116989	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	6p21.32	HLA-DPB2, COL11A2	rs3116989-G	NR	4E-14		1.078	[1.06-1.1]	Affymetrix [9000000] (imputed)	N
618	chr6_qbl_hap6	4336351	4336352	rs9366816	24940741	Chang SW	2014-06-18	PLoS One	A genome-wide association study on chronic HBV infection and its clinical progression in male Han-Taiwanese.	Chronic hepatitis B infection	321 Chinese ancestry cases, 304 Chinese ancestry controls	1,302 Chinese ancestry cases, 761 Chinese ancestry controls		HLA-DPA3	rs9366816-C	0.414	3E-10		1.43	[1.28-1.60]	Illumina [456262]	N
618	chr6_qbl_hap6	4336848	4336849	rs9277841	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6p21.32	HLA-DPA3	rs9277841-A	0.43233	1E-12		0.015864564	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
618	chr6_qbl_hap6	4357150	4357151	rs9277914	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	COL11A2	rs9277914-A	NR	8E-9		0.0222494	[0.015-0.03] unit increase	Affymetrix [321016] (imputed)	N
618	chr6_qbl_hap6	4357193	4357194	rs3130160	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.32	NR	rs3130160-?	NR	9E-11				Affymetrix [~ 8270000] (imputed)	N
618	chr6_qbl_hap6	4358080	4358081	rs3129205	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	COL11A2	rs3129205-T	0.348	3E-25	(Collagen alpha-2(XI) chain, COL11A2.11278.4.3)	0.27	[0.21-0.33] unit increase	Affymetrix [10572788] (imputed)	N
618	chr6_qbl_hap6	4364452	4364453	rs2229790	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	6p21.32	COL11A2	rs2229790-?	NR	3E-13		0.313	[0.23-0.4] unit decrease	Illumina [34656550] (imputed)	N
618	chr6_qbl_hap6	4368283	4368284	rs73741509	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.32		rs73741509-C	0.971	2E-14				Affymetrix [10369434] (imputed)	N
618	chr6_qbl_hap6	4368860	4368861	rs2855446	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6p21.32	Intergenic	rs2855446-A	0.6847	4E-9	(MTAG)	0.0083	[0.0056-0.011] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
618	chr6_qbl_hap6	4370721	4370722	rs2855440	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein COL11A2	5,366 Icelandic ancestry individuals	NA	6p21.32		rs2855440-T	0.3577	4E-31		0.229242	[0.19-0.27] unit decrease	Illumina [7506463] (imputed)	N
618	chr6_qbl_hap6	4371857	4371858	rs73741526	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.32		rs73741526-A	0.971	3E-13				Affymetrix [10369434] (imputed)	N
618	chr6_qbl_hap6	4373900	4373901	rs147927477	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Height	458,235 European ancestry individuals	NA	6p21.32		rs147927477-?	NR	9E-12		0.215425	[0.15-0.28] unit decrease	NR [9800000] (imputed)	N
618	chr6_qbl_hap6	4376170	4376171	rs2254287	18193043	Willer CJ	2008-01-13	Nat Genet	Newly identified loci that influence lipid concentrations and risk of coronary artery disease.	LDL cholesterol	8,589 European ancestry individuals	12,981 European ancestry individuals	6p21.32	B3GALT4	rs2254287-G	0.38	5E-8		1.91	[NR] mg/dl increase	Affymetrix, Illumina [~ 2261000] (imputed)	N
618	chr6_qbl_hap6	4376465	4376466	rs1799908	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	COL11A2	rs1799908-A	NR	5E-10		0.0178819	[0.012-0.024] unit decrease	Affymetrix [321016] (imputed)	N
618	chr6_qbl_hap6	4384101	4384102	rs41317102	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	6p21.32	COL11A2	rs41317102-C	NR	2E-7		0.247907	[0.15-0.34] unit increase	Illumina [at least 950000] (imputed)	N
618	chr6_qbl_hap6	4385749	4385750	rs9277934	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	COL11A2	rs9277934-T	NR	2E-10		0.0194123	[0.013-0.025] unit increase	Affymetrix [321016] (imputed)	N
618	chr6_qbl_hap6	4392438	4392439	rs144092339	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein COL11A2	5,366 Icelandic ancestry individuals	NA	6p21.32		rs144092339-T	0.02245	3E-20		0.580629	[0.46-0.7] unit increase	Illumina [7506463] (imputed)	N
618	chr6_qbl_hap6	4392438	4392439	rs144092339	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs144092339-T	0.037	1E-22	(Collagen alpha-2(XI) chain, COL11A2.11278.4.3)	0.63	[0.51-0.75] unit increase	Affymetrix [10572788] (imputed)	N
618	chr6_qbl_hap6	4393882	4393883	rs1050673	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.32	NR	rs1050673-G	0.64734375	4E-21	(COL11A2, 11278_4_3)	0.24454433	[0.19-0.29] unit increase	Illumina [> 1000000] (imputed)	N
618	chr6_qbl_hap6	4393882	4393883	rs1050673	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.32	NR	rs1050673-G	0.64734375	3E-9	(MICA, 2730_58_2)	0.15462574	[0.1-0.21] unit increase	Illumina [> 1000000] (imputed)	N
618	chr6_qbl_hap6	4401614	4401615	rs35690712	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs35690712-C	0.03	6E-22	(Collagen alpha-2(XI) chain, COL11A2.11278.4.3)	0.69	[0.55-0.83] unit increase	Affymetrix [10572788] (imputed)	N
618	chr6_qbl_hap6	4407009	4407010	rs421446	27244555	Li Y	2016-05-31	Nat Commun	Genome-wide association study identifies 8p21.3 associated with persistent hepatitis B virus infection among Chinese.	Persistent hepatitis B virus infection	1,251 Chinese ancestry persistently infected cases, 1,057 Chinese ancestry spontaneously recovered controls	3,905 Chinese ancestry persistently infected cases, 3,356 Chinese ancestry spontaneously recovered controls	6p21.32	MIR219A1	rs421446-G		3E-6		1.47	[1.25-1.72]	Affymetrix, Illumina [up to 4494311] (imputed)	N
618	chr6_qbl_hap6	4424647	4424648	rs146306986	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.32	TAPBP	rs146306986-C	0.99	3E-96	(TAPBP, 12378_71_3)	2.5151718	[2.29-2.74] unit decrease	Illumina [> 1000000] (imputed)	N
618	chr6_qbl_hap6	4425149	4425150	rs1705001	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	6p21.32	intergenic	rs1705001-A	0.2413	4E-11		0.0133	[0.0094-0.0172] unit increase	Affymetrix [18391927] (imputed)	N
618	chr6_qbl_hap6	4426711	4426712	rs411919	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	6p21.32	RING1	rs411919-G	0.73	8E-14				NR [> 9500000] (imputed)	N
618	chr6_qbl_hap6	4429849	4429850	rs77206300	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PDIA3	5,363 Icelandic ancestry individuals	NA	6p21.32		rs77206300-A	0.01105	6E-12		0.630021	[0.45-0.81] unit increase	Illumina [7506463] (imputed)	N
618	chr6_qbl_hap6	4436512	4436513	rs9277952	23817570	Shi Y	2013-06-30	Nat Genet	A genome-wide association study identifies two new cervical cancer susceptibility loci at 4q12 and 17q12.	Cervical cancer	Up to 1,364 Han Chinese ancestry cases, up to 3,028 Han Chinese ancestry controls	4,167 Han Chinese ancestry cases, 7,196 Han Chinese ancestry controls	6p21.32	intergenic	rs9277952-?	0.53	2E-9	(Matched)	1.18	[1.12-1.23]	Affymetrix [563339]	N
619	chr6_qbl_hap6	4472104	4472105	rs17215231	32424353	Zhang H	2020-05-18	Nat Genet	Genome-wide association study identifies 32 novel breast cancer susceptibility loci from overall and subtype-specific analyses.	Breast cancer (estrogen-receptor negative, progesterone-receptor negative, and human epidermal growth factor-receptor negative)	8,602 European ancestry triple negative cases, 9,414 European ancestry BRCA1 mutation carrier cases, 100,971 European ancestry controls	NA	6p21.32	NR	rs17215231-C	0.92	9E-13		1.1764705	[1.12-1.23]	Illumina [~ 9700000] (imputed)	N
619	chr6_qbl_hap6	4478756	4478757	rs3445	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	6p21.32	NR	rs3445-A	0.156	1E-9		0.00933656	[0.0063-0.0123] unit increase	NR [9732723] (imputed)	N
619	chr6_qbl_hap6	4482714	4482715	rs469064	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TAPBP	5,359 Icelandic ancestry individuals	NA	6p21.32		rs469064-C	0.4368	9E-113		0.401004	[0.37-0.44] unit increase	Illumina [7506463] (imputed)	N
619	chr6_qbl_hap6	4504202	4504203	rs144706539	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TAPBP	5,359 Icelandic ancestry individuals	NA	6p21.32		rs144706539-A	0.0122	6E-205		2.36433	[2.21-2.52] unit increase	Illumina [7506463] (imputed)	N
619	chr6_qbl_hap6	4504202	4504203	rs144706539	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	TAPBP	rs144706539-A	0.015	5E-94	(Tapasin, TAPBP.12378.71.3)	1.98	[1.78-2.18] unit increase	Affymetrix [10572788] (imputed)	N
619	chr6_qbl_hap6	4509016	4509017	rs9277972	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	6p21.32	NA	rs9277972-A	0.8069	5E-15		0.017	[0.013-0.021] unit decrease	NR [~ 27400000] (imputed)	N
619	chr6_qbl_hap6	4512555	4512556	rs2282851	34050765	Zhang L	2021-05-29	J Clin Endocrinol Metab	Joint genome-wide association analyses identified 49 novel loci for age at natural menopause.	Age at menopause	181,219 European ancestry individuals, 43,861 East Asian ancestry individuals	NA	6p21.32		rs2282851-T	0.28	1E-9		0.08	unit increase	Illumina [2093892] (imputed)	N
619	chr6_qbl_hap6	4512555	4512556	rs2282851	34050765	Zhang L	2021-05-29	J Clin Endocrinol Metab	Joint genome-wide association analyses identified 49 novel loci for age at natural menopause.	Age at menopause	181,219 European ancestry individuals	NA	6p21.32		rs2282851-T	0.28	2E-9		0.09	unit increase	Illumina [2398641] (imputed)	N
619	chr6_qbl_hap6	4514583	4514584	rs1061801	33128006	Timmins IR	2020-10-30	Commun Biol	Genome-wide association study of self-reported walking pace suggests beneficial effects of brisk walking on health and survival.	Walking pace	450,967 European ancestry individuals	NA	6p21.32	ZBTB22	rs1061801-G	NR	5E-8		0.00866168	[0.0055-0.0118] unit increase	Affymetrix [10061374] (imputed)	N
619	chr6_qbl_hap6	4514583	4514584	rs1061801	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (father's age at death)	309,383 European ancestry individuals	NA	6p21.32	NR	rs1061801-A	NR	3E-6		0.01574	[0.0091-0.0224] unit decrease	Illumina [541614]	N
619	chr6_qbl_hap6	4514583	4514584	rs1061801	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (father's age at death or father's attained age)	up to 699,000 European ancestry individuals	NA	6p21.32	NR	rs1061801-G		2E-6				Illumina [458865]	N
619	chr6_qbl_hap6	4514583	4514584	rs1061801	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6p21.32		rs1061801-A	0.187	1E-9		0.011	[0.0075-0.0145] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
619	chr6_qbl_hap6	4514583	4514584	rs1061801	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6p21.32	Intergenic	rs1061801-A	0.187	2E-10	(MTAG)	0.0108	[0.0075-0.0141] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
619	chr6_qbl_hap6	4526352	4526353	rs9277979	30120083	Ferguson A	2018-08-14	EBioMedicine	Genome-Wide Association Study of Circadian Rhythmicity in 71,500 UK Biobank Participants and Polygenic Association with Mood Instability.	Disrupted circadian rhythm (low relative amplitude of rest-activity cycles)	at least 2,700 European ancestry cases, at least 68,300 European ancestry controls	NA	6p21.32	DAXX	rs9277979-T	NR	2E-6		0.167	unit increase	Affymetrix [7969123] (imputed)	N
619	chr6_qbl_hap6	4538481	4538482	rs9277988	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6p21.32	NR	rs9277988-?	NR	3E-13				Affymetrix [~ 8270000] (imputed)	N
619	chr6_qbl_hap6	4538481	4538482	rs9277988	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	6p21.32	NR	rs9277988-C	0.1959	7E-14		0.023318363	[0.017-0.029] unit increase	Affymetrix [10549349] (imputed)	N
619	chr6_qbl_hap6	4538481	4538482	rs9277988	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	6p21.32	NR	rs9277988-C	0.188	7E-8		0.0104018	[0.0066-0.0142] unit decrease	NR [9732723] (imputed)	N
619	chr6_qbl_hap6	4540375	4540376	rs3130269	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs3130269-A	0.514	3E-63	(Tapasin, TAPBP.12378.71.3)	0.39	[0.35-0.43] unit decrease	Affymetrix [10572788] (imputed)	N
619	chr6_qbl_hap6	4541357	4541358	rs184722928	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	Systemic lupus erythematosus	1,639 East Asian ancestry cases, 2,410 East Asian ancestry controls	NA			rs184722928-A	NR	7E-6		0.6037	[0.34-0.87] unit decrease	Illumina [NR] (imputed)	N
619	chr6_qbl_hap6	4544700	4544701	rs9277992	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		6p21.32	DAXX	rs9277992-G	0.810445	6E-14		0.0132109	[0.0098-0.0167] unit decrease	Affymetrix [12370749]	N
619	chr6_qbl_hap6	4548695	4548696	rs187208364	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	6p21.32		rs187208364-?	NR	5E-8				Affymetrix [NR] (imputed)	N
619	chr6_qbl_hap6	4552057	4552058	rs9278004	34197731	Li Q	2021-06-23	Am J Hum Genet	Whole-exome sequencing reveals common and rare variants in immunologic and neurological genes implicated in achalasia.	Idiopathic achalasia	280 Chinese Han ancestry cases, 1,121 Chinese Han ancestry controls	NA	6p21.32		rs9278004-A	0.045	6E-6		2.9	[1.83-4.6]	Illumina [476650] (imputed)	N
619	chr6_qbl_hap6	4558942	4558943	rs9278020	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	6p21.32	NR	rs9278020-A	0.1012	4E-8				NR [9056863] (imputed)	N
619	chr6_qbl_hap6	4560947	4560948	rs114984535	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	6p21.32	DAXX, KIFC1	rs114984535-T	0.985403356	2E-6		1.2639532	[1.15-1.39]	Illumina [10439017] (imputed)	N
619	chr6_qbl_hap6	4577828	4577829	rs118109745	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	6p21.32		rs118109745-?	NR	7E-10		0.0811	unit decrease	NR [NR]	N
619	chr6_qbl_hap6	4587328	4587329	rs9278039	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.32		rs9278039-T	0.855	4E-12				Affymetrix [10369434] (imputed)	N
585	chr6_ssto_hap7	10172	10173	rs6939576	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6p22.1	NR	rs6939576-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
585	chr6_ssto_hap7	10284	10285	rs6939297	28078323	Raj T	2016-12-21	Neurol Genet	Genetic architecture of age-related cognitive decline in African Americans.	Cognitive decline (age-related)	3,964 African American ancestry individuals.	NA	6p22.1	SCAND3, RPSAP2	rs6939297--?		5E-6		0.009	unit decrease	Illumina [13900000] (imputed)	N
585	chr6_ssto_hap7	12200	12201	rs6908726	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small HDL	115,082 European ancestry individuals	NA	6p22.1		rs6908726-G	0.123912	6E-9		0.0360822	[0.024-0.048] unit decrease	NR [11722792] (imputed)	N
585	chr6_ssto_hap7	12200	12201	rs6908726	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	6p22.1	ZBED9	rs6908726-C	0.8747	2E-13		0.026150687	[0.019-0.033] unit increase	Affymetrix [11515109] (imputed)	N
585	chr6_ssto_hap7	12842	12842	rs139089584	31577861	Dai J	2019-10-31	Int J Cancer	Genome-wide association study of INDELs identified four novel susceptibility loci associated with lung cancer risk.	Lung cancer	20,871 European ancestry cases, 15,971 European ancestry controls, 2,331 Chinese ancestry cases, 3,077 Chinese ancestry controls	NA	6p22.1	LINC00533	rs139089584-TTTG	0.29	2E-7		0.92	[0.89-0.95]	Illumina [484196]	N
585	chr6_ssto_hap7	17050	17051	rs9368570	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	RPSAP2	rs9368570-A	NR	2E-16		0.0261372	[0.02-0.032] unit decrease	Affymetrix [321016] (imputed)	N
585	chr6_ssto_hap7	17901	17903	rs780222578	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6p22.1		rs780222578-C	0.155998	4E-9		0.0339542	[0.023-0.045] unit increase	NR [11722792] (imputed)	N
585	chr6_ssto_hap7	17901	17903	rs780222578	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6p22.1		rs780222578-C	0.155998	3E-8		0.0311183	[0.02-0.042] unit increase	NR [11722792] (imputed)	N
585	chr6_ssto_hap7	17901	17903	rs780222578	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6p22.1	RPSAP2	rs780222578-C	NR	4E-11		0.0287139	[0.02-0.037] unit decrease	Affymetrix [321114] (imputed)	N
585	chr6_ssto_hap7	17901	17903	rs780222578	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p22.1	RPSAP2	rs780222578-C	NR	3E-11		0.0289999	[0.02-0.038] unit decrease	Affymetrix [323858] (imputed)	N
585	chr6_ssto_hap7	19214	19215	rs7775835	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6p22.1		rs7775835-T	0.142781	3E-8		0.0324682	[0.021-0.044] unit increase	NR [11722792] (imputed)	N
585	chr6_ssto_hap7	19214	19215	rs7775835	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6p22.1		rs7775835-T	0.142781	5E-8		0.0321912	[0.021-0.044] unit decrease	NR [11722792] (imputed)	N
585	chr6_ssto_hap7	19214	19215	rs7775835	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Verbal-numerical reasoning	171,304 British ancestry individuals	NA	6p22.1		rs7775835-?	NR	2E-17				NR [7857346] (imputed)	N
585	chr6_ssto_hap7	19214	19215	rs7775835	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depression	688,809 European ancestry individuals	NA	6p22.1	NR	rs7775835-T	NR	2E-8		5.588	z score decrease	Affymetrix [10847151] (imputed)	N
585	chr6_ssto_hap7	19214	19215	rs7775835	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	RPSAP2	rs7775835-T	NR	9E-12		6.824	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
585	chr6_ssto_hap7	21633	21634	rs185053056	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	67,764 individuals	NA	6p22.1	NR	rs185053056-?		1E-13				NR [8377093]	N
585	chr6_ssto_hap7	21633	21634	rs185053056	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	65,967 individuals	NA	6p22.1	NR	rs185053056-?		1E-13				NR [8377093]	N
585	chr6_ssto_hap7	21692	21693	rs190340765	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Strep throat	52,487 European ancestry cases, 22,017 European ancestry controls	NA	6p22.1	NR	rs190340765-?	NR	2E-6		0.0695	[0.041-0.098] unit decrease	Illumina [at least 560000] (imputed)	N
585	chr6_ssto_hap7	23263	23264	rs145097508	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	6p22.1	NR	rs145097508-?	NR	2E-9		0.03206	[0.022-0.043] unit increase	Affymetrix [10847151] (imputed)	N
585	chr6_ssto_hap7	23582	23583	rs9393926	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	6p22.1	SCAND3	rs9393926-G	0.122701	9E-25		0.0306832	[0.025-0.037] unit decrease	Affymetrix [NR] (imputed)	N
585	chr6_ssto_hap7	30529	30530	rs9468413	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	RPSAP2	rs9468413-C	NR	4E-8		0.0222235	[0.014-0.03] unit decrease	Affymetrix [127266] (imputed)	N
585	chr6_ssto_hap7	33883	33884	rs115592443	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	RPSAP2	rs115592443-T	NR	6E-9		0.0289543	[0.019-0.039] unit decrease	Affymetrix [321016] (imputed)	N
585	chr6_ssto_hap7	37629	37630	rs150814685	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma and major depressive disorder	46,802 European ancestry asthma cases, 59,851 European ancestry major depressive disorder cases, 460,635 European ancestry controls	NA	6p22.1	C6orf100, GPX5, GPX6, HCG14, LOC401242, NKAPL, OR2B3, OR2J2, OR2J3, OR2W1, TRIM27, ZBED9, ZKSCAN3, ZKSCAN4, ZNF311, ZSCAN12, ZSCAN23, ZSCAN26, ZSCAN31, LOC100129636, PGBD1	rs150814685-?	NR	2E-11				Affymetrix [up to 13554551] (imputed)	N
585	chr6_ssto_hap7	38821	38822	rs16894234	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6p22.1	NR	rs16894234-?	NR	3E-12				Affymetrix [~ 8270000] (imputed)	N
585	chr6_ssto_hap7	53108	53109	rs1233578	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	RPSAP2	rs1233578-G	NR	2E-8		0.0228089	[0.015-0.031] unit decrease	Affymetrix [323858] (imputed)	N
585	chr6_ssto_hap7	53108	53109	rs1233578	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p22.1	NR	rs1233578-G	0.18	4E-9		1.13	[1.08-1.18]	Affymetrix [9886854] (imputed)	N
585	chr6_ssto_hap7	53108	53109	rs1233578	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p22.1	NR	rs1233578-G	0.18	4E-14			[NR]	Affymetrix [9886854] (imputed)	N
585	chr6_ssto_hap7	53108	53109	rs1233578	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p22.1	NR	rs1233578-G	0.18	2E-11		1.11	[1.08-1.14]	Affymetrix [9886854] (imputed)	N
585	chr6_ssto_hap7	53108	53109	rs1233578	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p22.1	NR	rs1233578-G	0.18	8E-14			[NR]	Affymetrix [9886854] (imputed)	N
585	chr6_ssto_hap7	53108	53109	rs1233578	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in non-current smokers	16,488 European ancestry cases, 169,688 European ancestry controls	NA	6p22.1	NR	rs1233578-G	0.18	2E-11		1.11	[1.08-1.14]	Affymetrix [9886854] (imputed)	N
585	chr6_ssto_hap7	53108	53109	rs1233578	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in never smokers	8,631 European ancestry cases, 120,544 European ancestry controls	NA	6p22.1	NR	rs1233578-G	0.18	3E-9		1.13	[1.09-1.18]	Affymetrix [9886854] (imputed)	N
585	chr6_ssto_hap7	53108	53109	rs1233578	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in ever smokers	12,446 European ancestry cases, 59,145 European ancestry controls	NA	6p22.1	NR	rs1233578-G	0.18	3E-7		1.1	[1.06-1.15]	Affymetrix [9886854] (imputed)	N
585	chr6_ssto_hap7	53108	53109	rs1233578	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	6p22.1	TRIM27	rs1233578-G	0.18	2E-17				NR [> 9500000] (imputed)	N
585	chr6_ssto_hap7	53108	53109	rs1233578	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	6p22.1	TRIM27	rs1233578-G	0.17936300000000005	4E-12		1.0560242	[1.03991341766738-1.07238465256811]	NR [9572556] (imputed)	N
585	chr6_ssto_hap7	53108	53109	rs1233578	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	6p22.1	NR	rs1233578-A	NR	1E-9		6.098	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
585	chr6_ssto_hap7	53108	53109	rs1233578	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	RPSAP2	rs1233578-A	NR	5E-12		6.899	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
585	chr6_ssto_hap7	53108	53109	rs1233578	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls, 2,149 African ancestry cases, 6,055 African ancestry controls, 1,239 Japanese ancestry cases, 3,976 Japanese ancestry controls, 606 Latino cases, 792 Latino controls	NA	6p22.1	GPX5, TRIM27	rs1233578-G	0.13	6E-7		1.09	[1.05-1.12]	Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
585	chr6_ssto_hap7	53108	53109	rs1233578	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls	NA	6p22.1	GPX5, TRIM27	rs1233578-G	0.13	5E-9		0.1	[0.061-0.139] unit increase	Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
585	chr6_ssto_hap7	54800	54802	rs372002372	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs372002372-?		2E-10	(Posterior corona radiata )			NR [8955960] (imputed)	N
585	chr6_ssto_hap7	54800	54802	rs372002372	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs372002372-?		1E-11	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
585	chr6_ssto_hap7	54800	54802	rs372002372	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs372002372-?		1E-11	(Superior corona radiata)			NR [8955960] (imputed)	N
585	chr6_ssto_hap7	54800	54802	rs372002372	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs372002372-?		5E-8	(Average across all tracts)			NR [8955960] (imputed)	N
585	chr6_ssto_hap7	54800	54802	rs372002372	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs372002372-?		2E-11	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
585	chr6_ssto_hap7	54800	54802	rs372002372	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs372002372-?		2E-10	(Posterior corona radiata )			NR [8955960] (imputed)	N
585	chr6_ssto_hap7	55610	55611	rs7763390	33740410	Warrier V	2021-03-16	Lancet Psychiatry	Gene-environment correlations and causal effects of childhood maltreatment on physical and mental health: a genetically informed approach.	Childhood maltreatment	185,414 European ancestry individuals	NA	6p22.1	NR	rs7763390-A	0.84	7E-9		0.027	[0.017-0.037] unit decrease	Affymetrix, Illumina [at least 500527] (imputed)	N
585	chr6_ssto_hap7	60612	60613	rs1233587	32358547	Persyn E	2020-05-01	Nat Commun	Genome-wide association study of MRI markers of cerebral small vessel disease in 42,310 participants.	White matter integrity (mean diffusivity)	17,467 European ancestry individuals	NA	6p22.1	ZFP57	rs1233587-T	0.295257	6E-12		0.325855	[0.23-0.42] unit decrease	Affymetrix [NR] (imputed)	N
585	chr6_ssto_hap7	60612	60613	rs1233587	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs1233587-?		2E-8	(Anterior corona radiata)			NR [8955960] (imputed)	N
585	chr6_ssto_hap7	62391	62392	rs1742741	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs1742741-?		4E-9	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
585	chr6_ssto_hap7	62391	62392	rs1742741	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs1742741-?		8E-9	(Retrolenticular part of internal capsule)			NR [8955960] (imputed)	N
585	chr6_ssto_hap7	62391	62392	rs1742741	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	6p22.1	NR	rs1742741-?		2E-8	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
585	chr6_ssto_hap7	62391	62392	rs1742741	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	6p22.1	NR	rs1742741-?		2E-8	(Average across all tracts)			NR [8955960] (imputed)	N
585	chr6_ssto_hap7	64549	64550	rs568609045	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium HDL	115,082 European ancestry individuals	NA	6p22.1		rs568609045-G	0.908816	1E-8		0.0550229	[0.036-0.074] unit increase	NR [11722792] (imputed)	N
585	chr6_ssto_hap7	64549	64550	rs568609045	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large HDL	115,082 European ancestry individuals	NA	6p22.1		rs568609045-G	0.908816	4E-9		0.0550531	[0.037-0.073] unit increase	NR [11722792] (imputed)	N
585	chr6_ssto_hap7	64549	64550	rs568609045	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in HDL	115,082 European ancestry individuals	NA	6p22.1		rs568609045-G	0.908816	4E-8		0.052683	[0.034-0.071] unit increase	NR [11722792] (imputed)	N
585	chr6_ssto_hap7	65861	65861	rs71548373	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	6p22.1	intergenic	rs71548373-?	NR	6E-13		0.0283	[0.021-0.035] unit decrease	Affymetrix [5701386] (imputed)	N
585	chr6_ssto_hap7	68454	68455	rs1233595	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs1233595-?		2E-9	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
585	chr6_ssto_hap7	68454	68455	rs1233595	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs1233595-?		1E-9	(Average across all tracts)			NR [8955960] (imputed)	N
585	chr6_ssto_hap7	68454	68455	rs1233595	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs1233595-?		4E-9	(Average across all tracts)			NR [8955960] (imputed)	N
585	chr6_ssto_hap7	68454	68455	rs1233595	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs1233595-?		3E-9	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
585	chr6_ssto_hap7	75560	75561	rs1233604	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p22.1	AL662890.1	rs1233604-A	NR	4E-8		0.0237945	[0.015-0.032] unit decrease	Affymetrix [319769] (imputed)	N
585	chr6_ssto_hap7	77857	77858	rs9257158	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p22.1	AL662890.1	rs9257158-G	NR	1E-8		0.0194989	[0.013-0.026] unit decrease	Affymetrix [323123] (imputed)	N
585	chr6_ssto_hap7	105815	105816	rs9257190	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p22.1	AL662890.3	rs9257190-G	NR	2E-10		0.0253484	[0.018-0.033] unit decrease	Affymetrix [323858] (imputed)	N
585	chr6_ssto_hap7	107201	107201	rs202065757	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p22.1	NR	rs202065757-?	NR	3E-6		0.1767	[0.1-0.25] unit increase	Illumina [at least 560000] (imputed)	N
585	chr6_ssto_hap7	108894	108895	rs141456208	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs141456208-?		4E-6		1.75	[1.38-2.23]	Illumina [7645193] (imputed)	N
585	chr6_ssto_hap7	111451	111452	rs7739915	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p22.1		rs7739915-G	0.829881	3E-8		0.0298334	[0.019-0.04] unit decrease	NR [11722792] (imputed)	N
585	chr6_ssto_hap7	111966	111967	rs2013652	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p22.1		rs2013652-T	0.605	3E-27				Affymetrix [10369434] (imputed)	N
585	chr6_ssto_hap7	116879	116880	rs4324798	19836008	Landi MT	2009-10-15	Am J Hum Genet	A genome-wide association study of lung cancer identifies a region of chromosome 5p15 associated with risk for adenocarcinoma.	Lung adenocarcinoma	5,739 European ancestry cases, 5,848 European ancestry controls	7,561 European ancestry cases, 13,818 European ancestry controls	6p22.1	TRNAA-UGC	rs4324798-A	0.09	2E-8		1.16	[1.09-1.24]	Illumina [515922]	N
585	chr6_ssto_hap7	119683	119683	rs142204688	32227112	Lee MA	2020-03-30	Hum Mol Genet	Common variation at 16p11.2 is associated with glycosuria in pregnancy: Findings from a genome-wide association study in European women.	Glycosuria in pregnancy (offspring genotype effect)	747 European ancestry cases, 2,991 European ancestry controls	NA	6p22.1	NR	rs142204688-ATTT	0.024554775	2E-9		3.1145043	[2.74466796-3.4843406]	Illumina [9873828] (imputed)	N
585	chr6_ssto_hap7	127959	127960	rs9257226	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6p22.1	XXbac-BPG308K3.5	rs9257226-G	NR	2E-9		0.0237897	[0.016-0.032] unit decrease	Affymetrix [321114] (imputed)	N
586	chr6_ssto_hap7	132441	132442	rs67662386	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	6p22.1	NR	rs67662386-?	NR	5E-7		0.135361	[0.082-0.188] unit increase	NR [13958389] (imputed)	N
586	chr6_ssto_hap7	132838	132839	rs187766969	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p22.1	NR	rs187766969-?	NR	3E-10		0.1907	[0.13-0.25] unit decrease	Illumina [at least 560000] (imputed)	N
586	chr6_ssto_hap7	133239	133240	rs209181	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	XXbac-BPG308K3.5	rs209181-A	NR	3E-15		0.032556	[0.024-0.041] unit decrease	Affymetrix [323858] (imputed)	N
586	chr6_ssto_hap7	133239	133240	rs209181	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	XXbac-BPG308K3.5	rs209181-A	NR	4E-15		0.0325128	[0.024-0.041] unit decrease	Affymetrix [127266] (imputed)	N
586	chr6_ssto_hap7	134666	134667	rs3118359	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	6p22.1	intergenic	rs3118359-T	0.0838	3E-13		0.0378	[0.028-0.048] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
586	chr6_ssto_hap7	136622	136623	rs3135296	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Neuroticism	274,107 British ancestry individuals	NA	6p22.1	NR	rs3135296-?	NR	6E-6		1.0090817	[1.01-1.01]	NR [8968716] (imputed)	N
586	chr6_ssto_hap7	136622	136623	rs3135296	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Major depressive disorder (lifetime)	16,301 British ancestry cases, 50,870 British ancestry controls	NA	6p22.1	NR	rs3135296-?	NR	5E-7		1.1049724	[1.06-1.15]	NR [5276842] (imputed)	N
586	chr6_ssto_hap7	136622	136623	rs3135296	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Help-seeking from a GP (without major depressive disorder symptoms)	8,632 British ancestry cases, 49,493 British ancestry controls	NA	6p22.1	NR	rs3135296-?	NR	1E-6		1.1350738	[1.08-1.19]	NR [5276842] (imputed)	N
586	chr6_ssto_hap7	136622	136623	rs3135296	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Help-seeking from a GP	113,262 British ancestry cases, 219,360 British ancestry controls	NA	6p22.1	NR	rs3135296-A	0.88	4E-12		1.0570824	[1.04-1.07]	NR [5276842] (imputed)	N
586	chr6_ssto_hap7	136837	136838	rs3131337	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	6p22.1	TRIM27	rs3131337-G	0.871891	1E-14		0.0229188	[0.017-0.029] unit increase	Affymetrix [NR] (imputed)	N
586	chr6_ssto_hap7	136837	136838	rs3131337	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	6p22.1	NR	rs3131337-?	NR	7E-6		0.0811	[0.046-0.116] unit decrease	Illumina [at least 560000] (imputed)	N
586	chr6_ssto_hap7	137226	137227	rs3132379	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	XXbac-BPG308K3.5	rs3132379-T	NR	1E-8		0.0232897	[0.015-0.031] unit decrease	Affymetrix [323858] (imputed)	N
586	chr6_ssto_hap7	137226	137227	rs3132379	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	XXbac-BPG308K3.5	rs3132379-T	NR	2E-8		0.0229592	[0.015-0.031] unit decrease	Affymetrix [127266] (imputed)	N
586	chr6_ssto_hap7	140776	140777	rs9278091	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA	6p22.1	NR	rs9278091-?	NR	6E-7		0.0586	[0.036-0.082] unit increase	Illumina [at least 560000] (imputed)	N
586	chr6_ssto_hap7	141048	141049	rs150548387	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Daytime sleep phenotypes	874 European ancestry individuals	NA	6p22.1	RPL13P, ZNF90P2, HCG14, TRIM27	rs150548387-G	NR	7E-7	(daytime resting)	2.54	[1.54-3.54] unit decrease	Affymetrix [7141204] (imputed)	N
586	chr6_ssto_hap7	144060	144061	rs9257248	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p22.1	NR	rs9257248-T	0.114	4E-11		0.0123	[0.0086-0.016] unit decrease	NR [7666894] (imputed)	N
586	chr6_ssto_hap7	144060	144061	rs9257248	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p22.1	LOC442181, LOC401242	rs9257248-A	0.217	7E-20				Illumina [118177]	N
586	chr6_ssto_hap7	157488	157489	rs561122079	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	6p22.1	XXbac-BPG308K3.5	rs561122079-T	0.0012	5E-6		1.4759	[0.84-2.11] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
586	chr6_ssto_hap7	161862	161863	rs9257270	32592749	Butler-Laporte G	2020-06-24	Clin Microbiol Infect	Elevated body-mass index is associated with an increased risk of infectious disease admissions and mortality: a mendelian randomization study.	Sepsis (hospital admission)	4,403 European ancestry cases, 17,612 European ancestry controls	NA	6p22.1	ZFP57	rs9257270-A	0.8	2E-8		0.018	[0.012-0.024] unit increase	NR [NR]	N
586	chr6_ssto_hap7	171609	171618	rs71554969	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p22.1	XXbac-BPG308K3.6	rs71554969-C	NR	8E-12		0.0218335	[0.016-0.028] unit decrease	Affymetrix [323123] (imputed)	N
586	chr6_ssto_hap7	172376	172377	rs3131336	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	6p22.1	TRIM27	rs3131336-C	0.882895	2E-18		0.019064	[0.015-0.023] unit decrease	Affymetrix [12370749]	N
586	chr6_ssto_hap7	173910	173914	rs138792987	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Inguinal hernia	16,725 European ancestry cases, 428,356 European ancestry controls, 1,664 East Asian ancestry cases, 177,062 East Asian ancestry controls	NA	6p22.1		rs138792987-G	NR	8E-11		0.1283	[0.09-0.167] unit decrease	Affymetrix, Illumina [25841416] (imputed)	N
586	chr6_ssto_hap7	180669	180670	rs3118365	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	6p22.1	LINC01623	rs3118365-A	0.0924	6E-12		0.0459	[0.033-0.059] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
586	chr6_ssto_hap7	180700	180701	rs4484511	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6p22.1	NR	rs4484511-?	NR	7E-14				Affymetrix [~ 8270000] (imputed)	N
586	chr6_ssto_hap7	181011	181012	rs113317416	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	XXbac-BPG308K3.6	rs113317416-T	NR	5E-10		0.0278345	[0.019-0.037] unit decrease	Affymetrix [321016] (imputed)	N
586	chr6_ssto_hap7	189116	189117	rs146347028	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Fibroblast growth factor basic levels	7,565 Finnish ancestry individuals	NA	6p22.1	NR	rs146347028-C		3E-6		0.2123	[0.12-0.3] SD units decrease	NR [10700000] (imputed)	N
586	chr6_ssto_hap7	194990	194991	rs7755875	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	6p22.1	TRIM27	rs7755875-A	0.3193	3E-11		0.002	[0.0014-0.0026] unit increase	Affymetrix [15275733] (imputed)	N
586	chr6_ssto_hap7	207132	207136	rs150164120	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs150164120-?		4E-10	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
586	chr6_ssto_hap7	207132	207136	rs150164120	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs150164120-?		2E-10	(Average across all tracts)			NR [8955960] (imputed)	N
586	chr6_ssto_hap7	207132	207136	rs150164120	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs150164120-?		1E-9	(Sagittal stratum)			NR [8955960] (imputed)	N
586	chr6_ssto_hap7	207291	207291	rs147662640	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs147662640-?		4E-8	(Average across all tracts)			NR [8955960] (imputed)	N
586	chr6_ssto_hap7	207291	207291	rs147662640	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs147662640-?		2E-8	(Cingulate gyrus)			NR [8955960] (imputed)	N
586	chr6_ssto_hap7	209416	209417	rs3132374	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in diabetes	70,762 European ancestry individuals, 20,967 African American individuals	NA	6p22.1	TRIM27	rs3132374-C	0.916	3E-9		0.959	[0.64-1.27] unit increase	Affymetrix [NR] (imputed)	N
586	chr6_ssto_hap7	213368	213369	rs209126	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p22.1	TRIM27	rs209126-T		6E-27		0.023	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
586	chr6_ssto_hap7	218165	218166	rs3135293	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hyperthyroidism	3,557 European ancestry cases, 456,942 European ancestry controls, 994 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	6p22.1		rs3135293-C	NR	1E-13		0.329	[0.24-0.42] unit increase	Affymetrix, Illumina [25841580] (imputed)	N
586	chr6_ssto_hap7	225063	225064	rs3131099	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Liver iron content	32,858 European ancestry individuals	NA	6p22.1	TRIM27	rs3131099-?	NR	9E-18	(conditional)	0.0654	NR mg/g decrease	Affymetrix [9390170] (imputed)	N
586	chr6_ssto_hap7	230328	230329	rs144996521	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	6p22.1	TRIM27	rs144996521-G	0.999717	5E-10		0.148497	[0.1-0.2] unit increase	NR [13737936] (imputed)	N
586	chr6_ssto_hap7	234445	234446	rs3131103	31219150	Ekenberg C	2019-06-13	J Infect Dis	Single nucleotide polymorphisms in HLA alleles are associated with HIV-1 viral load in demographically diverse, ART-naive participants from the START trial.	Pre-treatment viral load in HIV-1 infection	1,398 European ancestry individuals, 572 Black individuals, 418 Hispanic individuals, 13 Asian ancestry individuals, 39 individuals	NA	6p22.1	TRIM27	rs3131103-G	0.07	9E-16		0.37	[0.28-0.46] unit decrease	Affymetrix [339439]	N
586	chr6_ssto_hap7	235710	235711	rs28400872	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	6p22.1		rs28400872-C	0.340661	5E-11		0.0196364	[0.014-0.025] unit decrease	Illumina [13479924] (imputed)	N
586	chr6_ssto_hap7	237688	237689	rs9468445	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p22.1	NR	rs9468445-?	NR	4E-9		0.1617	[0.11-0.21] unit increase	Illumina [at least 560000] (imputed)	N
586	chr6_ssto_hap7	237827	237828	rs2015436	26087016	Pappa I	2015-06-18	Am J Med Genet B Neuropsychiatr Genet	A genome-wide approach to children's aggressive behavior: The EAGLE consortium.	Childhood and early adolescence aggressive behavior	18,988 European ancestry individuals	NA	6p22.1	TRIM27	rs2015436-T	0.73	2E-6				Affymetrix, Illumina [up to 3856236] (imputed)	N
586	chr6_ssto_hap7	238545	238546	rs1233508	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	6p22.1	TRIM27	rs1233508-T	0.463	2E-16		0.0098	[0.0074-0.0122] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
586	chr6_ssto_hap7	238769	238772	rs200822404	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	6p22.1	NR	rs200822404-?	NR	4E-6		0.1076	[0.062-0.153] unit decrease	Illumina [at least 560000] (imputed)	N
586	chr6_ssto_hap7	245625	245626	rs144965899	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6p22.1	Intergenic	rs144965899-C	0.0463	8E-11	(MTAG)	0.0206	[0.014-0.027] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
586	chr6_ssto_hap7	246705	246706	rs3130895	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p22.1	TRIM27, C6orf100	rs3130895-A	0.218	4E-19				Illumina [118177]	N
586	chr6_ssto_hap7	253315	253316	rs140736187	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p22.1	NR	rs140736187-?	NR	2E-7		0.2249	[0.14-0.31] unit increase	Illumina [at least 560000] (imputed)	N
586	chr6_ssto_hap7	255649	255650	rs111469561	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p22.1	NR	rs111469561-?	NR	1E-6		0.29	[0.17-0.41] unit increase	Illumina [at least 560000] (imputed)	N
586	chr6_ssto_hap7	256016	256017	rs763009	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	6p22.1	LINC01556, ZNF311	rs763009-?	NR	7E-7		0.014226723	[0.0086-0.0199] unit decrease	Illumina [27896057] (imputed)	N
586	chr6_ssto_hap7	257161	257162	rs4947339	20526338	Johnson AD	2010-06-06	Nat Genet	Genome-wide meta-analyses identifies seven loci associated with platelet aggregation in response to agonists.	Platelet aggregation	Up to 3,991 European ancestry individuals	Up to 840 African American individuals	6p22.1	TRIM27	rs4947339-T	0.438	2E-6	(epinehprine)			Affymetrix, Illumina [~ 2330000] (imputed)	N
586	chr6_ssto_hap7	257500	257501	rs3130844	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA	6p22.1	NR	rs3130844-?	NR	7E-6		0.0564	[0.032-0.081] unit increase	Illumina [at least 560000] (imputed)	N
586	chr6_ssto_hap7	257741	257742	rs114683528	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Daytime sleep phenotypes	874 European ancestry individuals	NA	6p22.1	C6orf100, KRT18P1, TRIM27, HCG15, HCG16, ZNF311	rs114683528-T	NR	1E-6	(daytime resting)	2.435	[1.46-3.41] unit decrease	Affymetrix [7141204] (imputed)	N
587	chr6_ssto_hap7	267126	267127	rs9257408	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	6p22.1	NR	rs9257408-G	0.4934	2E-10		0.0314	[0.022-0.041] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
587	chr6_ssto_hap7	267126	267127	rs9257408	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	6p22.1		rs9257408-C	NR	3E-7		1.03	[1.02-1.04]	Affymetrix, Illumina [NR] (imputed)	N
587	chr6_ssto_hap7	267126	267127	rs9257408	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p22.1	intergenic	rs9257408-C	0.41	7E-8	(EA)	1.02	[1-1.04] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
587	chr6_ssto_hap7	267126	267127	rs9257408	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	46,785 European ancestry cases, 42,892 European ancestry controls	NA	6p22.1	intergenic	rs9257408-C	0.38	5E-7		1.05	[1.03-1.08]	Affymetrix, Illumina [~ 14000000] (imputed)	N
587	chr6_ssto_hap7	267126	267127	rs9257408	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	15,748 European ancestry cases, 18,084 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls	6p22.1	Intergenic	rs9257408-C	0.38	5E-8		1.05	[1.03-1.08]	Affymetrix, Illumina [~ 11600000] (imputed)	N
587	chr6_ssto_hap7	275260	275261	rs148696809	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	6p22.1		rs148696809-?	NR	7E-9				NR [NR]	N
587	chr6_ssto_hap7	275260	275261	rs148696809	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma and major depressive disorder	46,802 European ancestry asthma cases, 59,851 European ancestry major depressive disorder cases, 460,635 European ancestry controls	NA	6p22.1	Intergenic	rs148696809-?	NR	5E-9				Affymetrix [up to 13554551] (imputed)	N
587	chr6_ssto_hap7	275260	275261	rs148696809	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	6p22.1	Intergenic	rs148696809-T	0.8828	8E-20		0.0406	[0.032-0.049] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
587	chr6_ssto_hap7	275260	275261	rs148696809	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Squamous cell lung carcinoma	7,426 European ancestry cases, 55,627 European ancestry controls	NA	6p22.1	LINC01556, ZNF311	rs148696809-C	0.086719155	4E-11		1.2477136	[1.168498995-1.332298319]	Illumina [10439017] (imputed)	N
587	chr6_ssto_hap7	275260	275261	rs148696809	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	6p22.1	LINC01556, ZNF311	rs148696809-C	0.086604881	3E-12		1.1571189	[1.11078617-1.205384399]	Illumina [10439017] (imputed)	N
587	chr6_ssto_hap7	285057	285058	rs3130887	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Polyunsaturated fatty acid levels	115,006 European ancestry individuals	NA	6p22.1		rs3130887-G	0.881305	8E-10		0.0379668	[0.026-0.05] unit increase	NR [11722792] (imputed)	N
587	chr6_ssto_hap7	295269	295270	rs3129791	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p22.1	NR	rs3129791-A	0.1148	2E-11		0.0125	[0.0088-0.0162] unit decrease	NR [7666894] (imputed)	N
587	chr6_ssto_hap7	306497	306498	rs114357009	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	6p22.1	C6orf100, HCG14, LOC401242, LOC100129636, OR2B3, OR2H1, OR2J2, OR2J3, OR2W1, OR5V1, OR10C1, OR11A1, OR12D2, OR12D3, OR14J1, TRIM27, ZNF311	rs114357009-A	0.049997	2E-10		1.1579555	[1.11-1.2]	Affymetrix [8274727] (imputed)	N
587	chr6_ssto_hap7	314379	314380	rs77514138	32227112	Lee MA	2020-03-30	Hum Mol Genet	Common variation at 16p11.2 is associated with glycosuria in pregnancy: Findings from a genome-wide association study in European women.	Glycosuria in pregnancy (offspring genotype effect)	747 European ancestry cases, 2,991 European ancestry controls	NA	6p22.1	NR	rs77514138-T	0.01849013	2E-9		3.6386764	[3.217150999-4.060201879]	Illumina [9873828] (imputed)	N
587	chr6_ssto_hap7	321585	321586	rs3130893	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium HDL	115,082 European ancestry individuals	NA	6p22.1		rs3130893-A	0.880989	2E-10		0.037629	[0.026-0.049] unit increase	NR [11722792] (imputed)	N
587	chr6_ssto_hap7	321585	321586	rs3130893	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-6 fatty acid levels	115,006 European ancestry individuals	NA	6p22.1		rs3130893-A	0.880993	9E-9		0.0356831	[0.024-0.048] unit increase	NR [11722792] (imputed)	N
587	chr6_ssto_hap7	321585	321586	rs3130893	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Linoleic acid levels	115,006 European ancestry individuals	NA	6p22.1		rs3130893-A	0.880993	5E-9		0.0364876	[0.024-0.049] unit increase	NR [11722792] (imputed)	N
587	chr6_ssto_hap7	324152	324153	rs3131082	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p22.1	NR	rs3131082-?	NR	2E-7		0.1949	[0.12-0.27] unit decrease	Illumina [at least 560000] (imputed)	N
587	chr6_ssto_hap7	325634	325635	rs3129795	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs3129795-?		8E-6		1.0526316	[1.03-1.08]	Illumina [7645193] (imputed)	N
587	chr6_ssto_hap7	325634	325635	rs3129795	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs3129795-?		2E-6		1.6129031	[1.32-1.96]	Illumina [7645193] (imputed)	N
587	chr6_ssto_hap7	333038	333039	rs3129797	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	6p22.1	ZNF311	rs3129797-C	0.882471	2E-20		0.0273248	[0.022-0.033] unit increase	Affymetrix [NR] (imputed)	N
587	chr6_ssto_hap7	367468	367469	rs114631266	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p22.1	OR2W1	rs114631266-C	0.974	2E-6		0.284	[0.17-0.4] unit increase	Affymetrix, Illumina [7374092] (imputed)	N
587	chr6_ssto_hap7	368810	368811	rs114415956	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	OR2P1P	rs114415956-T	NR	3E-10		0.0401608	[0.028-0.053] unit decrease	Affymetrix [321016] (imputed)	N
587	chr6_ssto_hap7	371824	371824	rs559462124	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs559462124-?		5E-9	(Average across all tracts)			NR [8955960] (imputed)	N
587	chr6_ssto_hap7	371824	371824	rs559462124	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs559462124-?		3E-9	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
587	chr6_ssto_hap7	371824	371824	rs559462124	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs559462124-?		2E-9	(Posterior corona radiata )			NR [8955960] (imputed)	N
587	chr6_ssto_hap7	371824	371824	rs559462124	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs559462124-?		2E-8	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
587	chr6_ssto_hap7	371824	371824	rs559462124	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs559462124-?		2E-8	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
587	chr6_ssto_hap7	371824	371824	rs559462124	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs559462124-?		2E-8	(Cingulate gyrus)			NR [8955960] (imputed)	N
587	chr6_ssto_hap7	371824	371824	rs559462124	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs559462124-?		6E-11	(Posterior corona radiata )			NR [8955960] (imputed)	N
587	chr6_ssto_hap7	371824	371824	rs559462124	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs559462124-?		4E-8	(Cingulate gyrus)			NR [8955960] (imputed)	N
587	chr6_ssto_hap7	371824	371824	rs559462124	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs559462124-?		4E-11	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
587	chr6_ssto_hap7	371824	371824	rs559462124	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs559462124-?		2E-8	(Average across all tracts)			NR [8955960] (imputed)	N
587	chr6_ssto_hap7	371824	371824	rs559462124	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs559462124-?		2E-10	(Superior corona radiata)			NR [8955960] (imputed)	N
587	chr6_ssto_hap7	371824	371824	rs559462124	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	6p22.1	NR	rs559462124-?		2E-8	(Average across all tracts)			NR [8955960] (imputed)	N
587	chr6_ssto_hap7	371824	371824	rs559462124	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs559462124-?		4E-8	(Posterior corona radiata )			NR [8955960] (imputed)	N
587	chr6_ssto_hap7	371824	371824	rs559462124	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs559462124-?		3E-8	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
587	chr6_ssto_hap7	385584	385585	rs3131085	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p22.1	GABBR1, OR12D3, XXbac-BPG308K3.5, TRIM27, AL662791.1, OR2AD1P, OR2P1P, OR2B3, XXbac-BCX196D17.5, OR2N1P, OR2H4P, OR2B4P, XXbac-BPG308K3.6, RPL13P, ZNF90P2, HCG14, RNU6-930P, LINC01556, KRT18P1, RN7SL471P, HCG15, HCG16, ZNF311, XXbac-BPG258E24.10, OR2W1, SAR1P1, OR2J3, OR2J4P, OR2J2, AL645937.1, XXbac-BPG308J9.3, OR2U2P, OR14J1, OR5V1, OR10C1, OR11A1, XXbac-BPG13B8.11, OR2H1, UBDP1, MAS1LP1, MAS1L, RPS17P1, XXbac-BPG13B8.10, OR2I1P, UBD	rs3131085-A	0.07580321	1E-9	(EA, MHC class I polypeptide-related sequence A)	0.5111	[0.35-0.67] unit increase	Affymetrix [509946]	N
587	chr6_ssto_hap7	389572	389573	rs3129787	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129787-?		6E-11	(Posterior corona radiata )			NR [8955960] (imputed)	N
587	chr6_ssto_hap7	389572	389573	rs3129787	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129787-?		4E-11	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
587	chr6_ssto_hap7	389572	389573	rs3129787	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129787-?		3E-8	(Cingulate gyrus)			NR [8955960] (imputed)	N
587	chr6_ssto_hap7	389572	389573	rs3129787	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129787-?		5E-9	(Cingulate gyrus)			NR [8955960] (imputed)	N
587	chr6_ssto_hap7	389572	389573	rs3129787	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129787-?		5E-12	(Posterior corona radiata )			NR [8955960] (imputed)	N
587	chr6_ssto_hap7	389572	389573	rs3129787	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129787-?		2E-8	(Anterior corona radiata)			NR [8955960] (imputed)	N
587	chr6_ssto_hap7	389572	389573	rs3129787	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129787-?		2E-12	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
587	chr6_ssto_hap7	389572	389573	rs3129787	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129787-?		3E-9	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
587	chr6_ssto_hap7	389572	389573	rs3129787	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129787-?		5E-8	(Posterior corona radiata )			NR [8955960] (imputed)	N
587	chr6_ssto_hap7	393141	393141	rs11275996	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs11275996-?		4E-8	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
587	chr6_ssto_hap7	393141	393141	rs11275996	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs11275996-?		7E-9	(Superior corona radiata)			NR [8955960] (imputed)	N
588	chr6_ssto_hap7	398522	398523	rs3129788	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p22.1	OR2B3P, OR2J3	rs3129788-A	0.217	7E-19				Illumina [118177]	N
588	chr6_ssto_hap7	403434	403435	rs115166140	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p22.1	NR	rs115166140-?	NR	1E-9		0.1623	[0.11-0.21] unit increase	Illumina [at least 560000] (imputed)	N
588	chr6_ssto_hap7	405875	405876	rs4463283	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p22.1	OR2B3, OR2J3	rs4463283-A	0.06	1E-6	(EA)	2.61	[1.74-3.90]	Illumina [up to 547389]	N
588	chr6_ssto_hap7	415976	415977	rs3129178	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p22.1	NR	rs3129178-A	0.0951	6E-9	(EA)	0.0669	[0.044-0.089] unit decrease	Illumina [~ 11800000] (imputed)	N
588	chr6_ssto_hap7	422045	422046	rs3129106	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p22.1	NR	rs3129106-?	NR	7E-6		0.0757	[0.043-0.109] unit decrease	Illumina [at least 560000] (imputed)	N
588	chr6_ssto_hap7	423106	423107	rs115328582	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	OR2J3	rs115328582-G	NR	4E-14		0.033147	[0.025-0.042] unit decrease	Affymetrix [321016] (imputed)	N
588	chr6_ssto_hap7	425115	425116	rs3129109	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	6p22.1	OR2J3	rs3129109-T	0.39	2E-17		0.032	[NR] unit decrease	Affymetrix, Illumina [2834208] (imputed)	N
588	chr6_ssto_hap7	443742	443743	rs3129119	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129119-?		3E-11	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
588	chr6_ssto_hap7	443742	443743	rs3129119	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129119-?		2E-8	(Superior corona radiata)			NR [8955960] (imputed)	N
588	chr6_ssto_hap7	443742	443743	rs3129119	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129119-?		2E-11	(Superior corona radiata)			NR [8955960] (imputed)	N
588	chr6_ssto_hap7	443742	443743	rs3129119	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129119-?		1E-9	(Retrolenticular part of internal capsule)			NR [8955960] (imputed)	N
588	chr6_ssto_hap7	452660	452661	rs3129120	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Major depressive disorder (lifetime)	16,301 British ancestry cases, 50,870 British ancestry controls	NA	6p22.1	NR	rs3129120-?	NR	4E-7		1.1049724	[1.06-1.15]	NR [5276842] (imputed)	N
588	chr6_ssto_hap7	452660	452661	rs3129120	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Help-seeking from a psychiatrist	36,286 British ancestry cases, 297,126 British ancestry controls	NA	6p22.1	NR	rs3129120-T	0.876	1E-10		1.081081	NR	NR [5276842] (imputed)	N
588	chr6_ssto_hap7	459631	459632	rs3130725	27668658	Iotchkova V	2016-11-01	Nat Genet	Discovery and refinement of genetic loci associated with cardiometabolic risk using dense imputation maps.	Cardiometabolic and hematological traits	up to 35,981 European ancestry individuals	up to 102,505 European ancestry individuals	6p22.1	ZNF311	rs3130725-G		3E-26	(WBC)	0.008	[0.006-0.01] unit decrease	Affymetrix, Illumina [17000000] (imputed)	N
588	chr6_ssto_hap7	467383	467384	rs62405961	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	OR2J2	rs62405961-A	NR	2E-8		0.0707669	[0.046-0.095] unit decrease	Affymetrix [321016] (imputed)	N
588	chr6_ssto_hap7	471164	471165	rs3129137	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129137-?		3E-8	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
588	chr6_ssto_hap7	474530	474531	rs4947263	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p22.1	NR	rs4947263-T	0.1178	3E-12		0.0127	[0.0092-0.0162] unit decrease	NR [7666894] (imputed)	N
588	chr6_ssto_hap7	476685	476690	rs369812099	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	6p22.1		rs369812099-T	NR	3E-8		0.0145	[0.0094-0.0196] unit increase	Affymetrix, Illumina [20535873] (imputed)	N
588	chr6_ssto_hap7	479203	479204	rs3129151	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	NR	rs3129151-?	NR	7E-8		5.388	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
588	chr6_ssto_hap7	479837	479838	rs3130740	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3130740-?		4E-9	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
588	chr6_ssto_hap7	482631	482632	rs3129157	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p22.1	OR2J2	rs3129157-A		3E-33		0.068	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
588	chr6_ssto_hap7	485436	485437	rs9257566	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	6p22.1	NR	rs9257566-?	NR	7E-30		1.2277772	[1.19-1.26]	Affymetrix, Illumina [12447948] (imputed)	N
588	chr6_ssto_hap7	486527	486528	rs9295795	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	6p22.1		rs9295795-T	0.94311	2E-8		0.026	[0.016-0.036] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
588	chr6_ssto_hap7	488609	488610	rs186983332	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p22.1	NR	rs186983332-?	NR	7E-6		0.2003	[0.11-0.29] unit decrease	Illumina [at least 560000] (imputed)	N
588	chr6_ssto_hap7	489309	489310	rs114503016	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p22.1		rs114503016-C	0.986	4E-13				Affymetrix [10369434] (imputed)	N
588	chr6_ssto_hap7	489309	489310	rs114503016	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p22.1		rs114503016-C	0.986	3E-16				Affymetrix [10369434] (imputed)	N
588	chr6_ssto_hap7	490346	490347	rs3116816	32595297	Kweon K	2018-04-01	Soa Chongsonyon Chongsin Uihak	Genome-Wide Analysis Reveals Four Novel Loci for Attention-Deficit Hyperactivity Disorder in Korean Youths.	Attention deficit hyperactivity disorder (inattention symptoms)	27 Korean ancestry child sibling pairs	NA	6p22.1	OR2J2, OR14J1	rs3116816-A	0.398	2E-7				Affymetrix [432921]	N
588	chr6_ssto_hap7	494063	494064	rs3130746	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p22.1	NR	rs3130746-?	NR	3E-6		0.1783	[0.1-0.25] unit increase	Illumina [at least 560000] (imputed)	N
588	chr6_ssto_hap7	496657	496658	rs3129171	32358547	Persyn E	2020-05-01	Nat Commun	Genome-wide association study of MRI markers of cerebral small vessel disease in 42,310 participants.	White matter integrity (fractional anisotropy)	17,663 European ancestry individuals	NA	6p22.1	ZFP57a, OR2J2, OR2H4P, XXbac-BPG308J9.3	rs3129171-A	0.242404	2E-9		0.294752	[0.2-0.39] unit increase	Affymetrix [NR] (imputed)	N
588	chr6_ssto_hap7	496657	496658	rs3129171	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129171-?		3E-9	(Retrolenticular part of internal capsule)			NR [8955960] (imputed)	N
588	chr6_ssto_hap7	496657	496658	rs3129171	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129171-?		3E-9	(Anterior corona radiata)			NR [8955960] (imputed)	N
588	chr6_ssto_hap7	496657	496658	rs3129171	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129171-?		2E-11	(Average across all tracts)			NR [8955960] (imputed)	N
588	chr6_ssto_hap7	496657	496658	rs3129171	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129171-?		9E-9	(Anterior corona radiata)			NR [8955960] (imputed)	N
588	chr6_ssto_hap7	496657	496658	rs3129171	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129171-?		4E-10	(Average across all tracts)			NR [8955960] (imputed)	N
588	chr6_ssto_hap7	496657	496658	rs3129171	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3129171-?		2E-8	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
588	chr6_ssto_hap7	499491	499492	rs185008237	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	6p22.1	NR	rs185008237-?	NR	4E-6		0.0077326	[0.0045-0.011] unit increase	Affymetrix [805426] (imputed)	N
588	chr6_ssto_hap7	505967	505968	rs114224598	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling miserable	376,097 European ancestry individuals	NA	6p22.1	NR	rs114224598-A	0.0456381	3E-8		5.52	z score increase	NR [10847151] (imputed)	N
588	chr6_ssto_hap7	505967	505968	rs114224598	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p22.1	NR	rs114224598-?	NR	6E-9		0.175	[0.12-0.23] unit decrease	Illumina [at least 560000] (imputed)	N
588	chr6_ssto_hap7	520991	520992	rs139598127	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p22.1	NR	rs139598127-A	0.01045	2E-8	(SBDS)	0.06239	NR unit increase	Illumina [1671387] (imputed)	N
588	chr6_ssto_hap7	521650	521651	rs9257616	24047820	St Pourcain B	2013-09-18	Mol Autism	Common variation contributes to the genetic architecture of social communication traits.	Social communication problems	5,584 European ancestry children	1,364 European ancestry children	6p22.1	OR2J2, TRIM27, ZNF311, OR2W1, OR2B3, LOC651503, OR214J1, OR5V1, OR12D3, OR2J3	rs9257616-G	0.56	3E-7		0.093	[0.058-0.128] unit increase	Illumina [~ 2500000] (imputed)	N
589	chr6_ssto_hap7	547183	547184	rs3117342	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Cognitive traits (MTAG)	331,679 British ancestry individuals	NA	6p22.1		rs3117342-?	NR	2E-12				NR [7857346] (imputed)	N
589	chr6_ssto_hap7	547615	547616	rs3130820	29483656	Pardinas AF	2018-02-26	Nat Genet	Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.	Schizophrenia	40,675 European ancestry cases, 64,643 European ancestry controls	1,651 European ancestry cases, 4,111 cases, 142,717 European ancestry controls, 11,507 controls	6p22.1	xMHC	rs3130820-?	NR	2E-44		1.281	[1.25-1.32]	Illumina [8000000] (imputed)	N
589	chr6_ssto_hap7	551513	551514	rs3117340	30271922	Clifton EAD	2018-05-03	Commun Biol	Genome-wide association study for risk taking propensity indicates shared pathways with body mass index.	Smoking status (ever vs never smokers)	207,229 European ancestry ever smoker cases, 243,177 European ancestry never smoker controls	NA	6p22.1	NR	rs3117340-G	0.622344	9E-7		0.0051953	[0.0031-0.0073] unit increase	Affymetrix [7736308] (imputed)	N
589	chr6_ssto_hap7	551513	551514	rs3117340	30271922	Clifton EAD	2018-05-03	Commun Biol	Genome-wide association study for risk taking propensity indicates shared pathways with body mass index.	Self-reported risk-taking behaviour	113,882 European ancestry cases, 322,354 European ancestry controls	NA	6p22.1	OR14J1	rs3117340-G	0.62	7E-9		1.024	[1.016-1.033]	Affymetrix [7736308] (imputed)	N
589	chr6_ssto_hap7	551513	551514	rs3117340	30181555	Strawbridge RJ	2018-09-04	Transl Psychiatry	Genetics of self-reported risk-taking behaviour, trans-ethnic consistency and relevance to brain gene expression.	Self-reported risk-taking behaviour	83,677 British ancestry cases, 244,662 British ancestry controls	2,764 South Asian ancestry cases, 3,139 African Caribbean ancestry cases, 16,169 European ancestry cases, 3,866 mixed ancestry cases, 4,267 South Asian ancestry controls, 4,341 African Caribbean ancestry controls, 31,814 European ancestry controls, 5,988 mixed ancestry controls	6p22.1	NR	rs3117340-T	0.38	1E-8		0.03	[0.02-0.04] unit decrease	Affymetrix [NR] (imputed)	N
589	chr6_ssto_hap7	558431	558432	rs3117334	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	6p22.1	NR	rs3117334-T	0.501	7E-9		0.00785988	[0.0052-0.0105] unit increase	NR [~ 9732723] (imputed)	N
589	chr6_ssto_hap7	564414	564415	rs3130825	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p22.1		rs3130825-?	NR	2E-9		0.0208387	[0.015-0.027] unit decrease	Affymetrix [20259828] (imputed)	N
589	chr6_ssto_hap7	564832	564833	rs149016863	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs149016863-?		3E-6		1.74	[1.38-2.20]	Illumina [7645193] (imputed)	N
589	chr6_ssto_hap7	565946	565947	rs149702363	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma and major depressive disorder	46,802 European ancestry asthma cases, 59,851 European ancestry major depressive disorder cases, 460,635 European ancestry controls	NA	6p22.1	OR2H1, OR5V1, OR10C1, OR11A1, OR12D2, OR12D3, OR14J1	rs149702363-?	NR	4E-10				Affymetrix [up to 13554551] (imputed)	N
589	chr6_ssto_hap7	571050	571051	rs566858049	30181555	Strawbridge RJ	2018-09-04	Transl Psychiatry	Genetics of self-reported risk-taking behaviour, trans-ethnic consistency and relevance to brain gene expression.	Self-reported risk-taking behaviour	83,677 British ancestry cases, 244,662 British ancestry controls	2,764 South Asian ancestry cases, 3,139 African Caribbean ancestry cases, 16,169 European ancestry cases, 3,866 mixed ancestry cases, 4,267 South Asian ancestry controls, 4,341 African Caribbean ancestry controls, 31,814 European ancestry controls, 5,988 mixed ancestry controls	6p22.1	HLA	rs566858049-T	0.6	7E-9		0.031	[0.021-0.041] unit increase	Affymetrix [NR] (imputed)	N
589	chr6_ssto_hap7	585140	585141	rs144447022	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	6p22.1		rs144447022-?	NR	4E-9				NR [NR]	N
589	chr6_ssto_hap7	585140	585141	rs144447022	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	67,764 individuals	NA	6p22.1	NR	rs144447022-?		9E-28				NR [8377093]	N
589	chr6_ssto_hap7	585140	585141	rs144447022	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms (MTAG)	955,012 individuals	NA	6p22.1	NR	rs144447022-?		3E-12				NR [520857]	N
589	chr6_ssto_hap7	585140	585141	rs144447022	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Bipolar disorder (MTAG)	65,682 individuals	NA	6p22.1	NR	rs144447022-?		7E-20				NR [520857]	N
589	chr6_ssto_hap7	585140	585141	rs144447022	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	6p22.1	XXbac-BPG308J9.3	rs144447022-T	NR	1E-13		0.036134973	[0.027-0.046] unit increase	Affymetrix [NR]	N
589	chr6_ssto_hap7	585140	585141	rs144447022	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	6p22.1	NR	rs144447022-G	NR	2E-28		1.25	[NR]	Illumina [7158791] (imputed)	N
589	chr6_ssto_hap7	589069	589070	rs3130834	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p22.1	NR	rs3130834-C	0.0955	5E-9	(EA)	0.0672	[0.045-0.09] unit decrease	Illumina [~ 11800000] (imputed)	N
589	chr6_ssto_hap7	589485	589485	rs5875188	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p22.1	OR2J2, OR14J1	rs5875188-?	0.06	7E-6	(EA)	2.52	[1.66-3.83]	Illumina [up to 547389]	N
589	chr6_ssto_hap7	593678	593679	rs116466121	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	6p22.1	Intergenic	rs116466121-A	0.8753	8E-9	(MTAG)	0.0156	[0.01-0.021] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
589	chr6_ssto_hap7	593678	593679	rs116466121	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	6p22.1	Intergenic	rs116466121-A	0.8759	2E-12	(MTAG)	0.0177	[0.013-0.023] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
589	chr6_ssto_hap7	595902	595903	rs9257681	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p22.1	NR	rs9257681-G	0.1151	2E-12		0.0131	[0.0094-0.0168] unit decrease	NR [7666894] (imputed)	N
589	chr6_ssto_hap7	596981	596981	rs6149499	30093612	O'Mara TA	2018-08-09	Nat Commun	Identification of nine new susceptibility loci for endometrial cancer.	Endometrial cancer (endometrioid histology)	8,758 European ancestry cases, 46,126 European ancestry controls	NA	6p22.1	LOC101929006, LOC105375005	rs6149499-G	0.870856	6E-7		1.16	[1.09-1.23]	Affymetrix, Illumina [~ 11700000] (imputed)	N
589	chr6_ssto_hap7	597359	597360	rs1884123	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	6p22.1	OR14J1	rs1884123-A	0.3614	3E-8		0.011205866	[0.0072-0.0152] unit decrease	Illumina [9339358] (imputed)	N
589	chr6_ssto_hap7	598906	598907	rs1033568	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA		NR	rs1033568-A	0.429	1E-6		1.081	[1.05-1.11]	Illumina [11270530] (imputed)	N
589	chr6_ssto_hap7	601370	601371	rs3117425	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	6p22.1	NR	rs3117425-T	NR	2E-8		0.02019	[0.013-0.027] unit decrease	Affymetrix [10847151] (imputed)	N
589	chr6_ssto_hap7	601370	601371	rs3117425	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling nervous	373,121 European ancestry individuals	NA	6p22.1	ZNF391	rs3117425-T	0.119369	5E-8		5.47	z score decrease	NR [10847151] (imputed)	N
589	chr6_ssto_hap7	612965	612966	rs3117426	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3117426-?		4E-10	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
589	chr6_ssto_hap7	612965	612966	rs3117426	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3117426-?		2E-8	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
589	chr6_ssto_hap7	612965	612966	rs3117426	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3117426-?		1E-9	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
589	chr6_ssto_hap7	612965	612966	rs3117426	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	6p22.1	NR	rs3117426-?		4E-8	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
589	chr6_ssto_hap7	615089	615090	rs3117427	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Receptor for advanced glycosylation end products levels	21,758 European ancestry individuals	9,173 individuals	6p22.1		rs3117427-T	0.9	2E-11		0.0988	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
589	chr6_ssto_hap7	616181	616182	rs61735224	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p22.1	NR	rs61735224-T	0.01045	2E-8	(SBDS)	0.06239	NR unit increase	Illumina [1671387] (imputed)	N
589	chr6_ssto_hap7	624623	624624	rs3129682	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p22.1	GABBR1, OR12D3, XXbac-BPG308K3.5, TRIM27, AL662791.1, OR2AD1P, OR2P1P, OR2B3, XXbac-BCX196D17.5, OR2N1P, OR2H4P, OR2B4P, XXbac-BPG308K3.6, RPL13P, ZNF90P2, HCG14, RNU6-930P, LINC01556, KRT18P1, RN7SL471P, HCG15, HCG16, ZNF311, XXbac-BPG258E24.10, OR2W1, SAR1P1, OR2J3, OR2J4P, OR2J2, AL645937.1, XXbac-BPG308J9.3, OR2U2P, OR14J1, OR5V1, OR10C1, OR11A1, XXbac-BPG13B8.11, OR2H1, UBDP1, MAS1LP1, MAS1L, RPS17P1, XXbac-BPG13B8.10, OR2I1P, UBD	rs3129682-T	0.07742915	1E-19	(EA, MHC class I polypeptide-related sequence B)	0.7369	[0.58-0.89] unit decrease	Affymetrix [509946]	N
589	chr6_ssto_hap7	624912	624912	rs201452814	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-17 levels	7,760 Finnish ancestry individuals	NA	6p22.1	NR	rs201452814-GT		4E-6		0.2398	[0.14-0.34] SD units increase	NR [10700000] (imputed)	N
589	chr6_ssto_hap7	624912	624912	rs201452814	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Fibroblast growth factor basic levels	7,565 Finnish ancestry individuals	NA	6p22.1	NR	rs201452814-GT		4E-6		0.242	[0.14-0.34] SD units increase	NR [10700000] (imputed)	N
589	chr6_ssto_hap7	641234	641235	rs146977025	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p22.1	NR	rs146977025-T	0.01045	2E-8	(SBDS)	0.06239	NR unit increase	Illumina [1671387] (imputed)	N
589	chr6_ssto_hap7	642990	642991	rs6903989	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	6p22.1	NR	rs6903989-C		2E-8		0.07	[0.05-0.09] unit increase	NR [NR]	N
589	chr6_ssto_hap7	647617	647618	rs9257745	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	DDX6P1	rs9257745-T	NR	8E-10		0.0256365	[0.017-0.034] unit decrease	Affymetrix [321016] (imputed)	N
590	chr6_ssto_hap7	655939	655940	rs7745768	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	6p22.1	NR	rs7745768-?	NR	8E-7		0.131782	[0.08-0.184] unit increase	NR [13958389] (imputed)	N
590	chr6_ssto_hap7	658152	658153	rs148466862	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	6p22.1		rs148466862-?	NR	5E-12		0.0507	unit increase	NR [NR]	N
590	chr6_ssto_hap7	658152	658153	rs148466862	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Subjective well-being (MTAG)	388,538 European ancestry individuals	NA	6p22.1	NR	rs148466862-T	0.0411	8E-12		0.0324	[0.023-0.042] unit decrease	Illumina [NR] (imputed)	N
590	chr6_ssto_hap7	658152	658153	rs148466862	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Neuroticism (MTAG)	168,105 European ancestry individuals	NA	6p22.1	NR	rs148466862-T	0.0463	5E-10		0.0438	[0.03-0.058] unit increase	Illumina [NR] (imputed)	N
590	chr6_ssto_hap7	658152	658153	rs148466862	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms (MTAG)	354,862 European ancestry individuals	NA	6p22.1	NR	rs148466862-T	0.0425	1E-10		0.0343	[0.024-0.045] unit increase	Illumina [NR] (imputed)	N
590	chr6_ssto_hap7	663837	663838	rs9357080	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6p22.1	NR	rs9357080-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
590	chr6_ssto_hap7	664626	664627	rs7761746	30108155	Hebbar P	2018-08-14	J Lipid Res	Genome-wide association study identifies novel recessive genetic variants for high TGs in an Arab population.	Triglyceride levels	1,353 Kuwaiti ancestry individuals	1,176 Kuwaiti ancestry individuals	6p22.1	OR5V1	rs7761746-A	NR	1E-9		6.066	z-score increase	Illumina [632375]	N
590	chr6_ssto_hap7	668013	668014	rs9257774	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	6p22.1		rs9257774-?	NR	5E-8				Affymetrix [NR] (imputed)	N
590	chr6_ssto_hap7	668013	668014	rs9257774	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p22.1		rs9257774-G	0.499	5E-24				Affymetrix [10369434] (imputed)	N
590	chr6_ssto_hap7	669804	669805	rs7754402	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs7754402-?		2E-8	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
590	chr6_ssto_hap7	672781	672782	rs2207699	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6p22.1	OR5V1	rs2207699-T	NR	2E-10		0.0197089	[0.014-0.026] unit increase	Affymetrix [321114] (imputed)	N
590	chr6_ssto_hap7	676307	676308	rs9257794	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6p22.1		rs9257794-?	NR	7E-6		1.05596	[1.03-1.08]	NR [685523]	N
590	chr6_ssto_hap7	676307	676308	rs9257794	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	OR5V1	rs9257794-T	NR	1E-10		0.0227562	[0.016-0.03] unit decrease	Affymetrix [323858] (imputed)	N
590	chr6_ssto_hap7	676307	676308	rs9257794	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	OR5V1	rs9257794-T	NR	9E-11		0.022922	[0.016-0.03] unit decrease	Affymetrix [127266] (imputed)	N
590	chr6_ssto_hap7	676307	676308	rs9257794	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6p22.1	OR5V1	rs9257794-T	NR	3E-9		0.0207731	[0.014-0.028] unit decrease	Affymetrix [321114] (imputed)	N
590	chr6_ssto_hap7	677721	677722	rs3930883	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p22.1		rs3930883-G	0.357	7E-41				Affymetrix [10369434] (imputed)	N
590	chr6_ssto_hap7	681388	681389	rs9257800	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Pork consumption	335,576 European ancestry individuals	NA	6p22.1	LRRC16A, SCGN, SLC17A4, SLC17A1	rs9257800-?	NR	7E-11		0.0040428	[-0.00326-0.01135] unit decrease	Affymetrix [25921788] (imputed)	N
590	chr6_ssto_hap7	681388	681389	rs9257800	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Oily fish consumption	335,576 European ancestry individuals	NA	6p22.1	LRRC16A, SCGN, SLC17A4, SLC17A1, SLC17A3, SLC17A2	rs9257800-?	NR	7E-11		0.0241753	[0.017-0.031] unit increase	Affymetrix [25921788] (imputed)	N
590	chr6_ssto_hap7	681652	681653	rs7772982	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	OR5V1	rs7772982-C	NR	7E-9		0.0217566	[0.014-0.029] unit decrease	Affymetrix [321016] (imputed)	N
590	chr6_ssto_hap7	683420	683421	rs3749971	33909500	Moll M	2021-04-28	Am J Physiol Lung Cell Mol Physiol	A Systematic Analysis of Protein-altering Exonic Variants in Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease	up to 31,465 European ancestry cases, up to 203,688 European ancestry controls, up to 1,413 African ancestry cases, up to 6,080 African ancestry controls, up to 287 East Asian ancestry cases, up to 7,484 East Asian ancestry controls, up to 61 Hispanic cases, up to 613 Hispanic controls	NA	6p22.1	OR12D3	rs3749971-A	0.12	3E-11		1.11	[1.08 -1.14]	Illumina [at least 109036]	N
590	chr6_ssto_hap7	683420	683421	rs3749971	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p22.1	OR12D3	rs3749971-A		2E-38		0.045	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
590	chr6_ssto_hap7	683420	683421	rs3749971	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	6p22.1	NR	rs3749971-A	NR	3E-9		5.929	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
590	chr6_ssto_hap7	684000	684001	rs9257802	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	OR5V1	rs9257802-T	NR	6E-12		0.026998	[0.019-0.035] unit decrease	Affymetrix [323858] (imputed)	N
590	chr6_ssto_hap7	684000	684001	rs9257802	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	OR5V1	rs9257802-T	NR	2E-11		0.0261971	[0.019-0.034] unit decrease	Affymetrix [127266] (imputed)	N
590	chr6_ssto_hap7	684000	684001	rs9257802	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p22.1	OR5V1	rs9257802-T	NR	7E-9		0.0225586	[0.015-0.03] unit decrease	Affymetrix [323858] (imputed)	N
590	chr6_ssto_hap7	684000	684001	rs9257802	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	6p22.1	NR	rs9257802-?		3E-8	(Anterior corona radiata)			NR [8955960] (imputed)	N
590	chr6_ssto_hap7	684000	684001	rs9257802	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	OR5V1	rs9257802-T	NR	7E-11		6.531	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
590	chr6_ssto_hap7	686871	686872	rs238883	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p22.1	OR5V1	rs238883-G	NR	7E-10		0.0202353	[0.014-0.027] unit decrease	Affymetrix [323123] (imputed)	N
590	chr6_ssto_hap7	686871	686872	rs238883	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Non-Hodgkin's lymphoma	2,400 European ancestry cases, 410,350 European ancestry controls	NA	6p22.1		rs238883-A	NR	3E-7		1.177995	NR	Affymetrix [7846216] (imputed)	N
590	chr6_ssto_hap7	686871	686872	rs238883	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p22.1	OR5V1	rs238883-A	0.6771	1E-7		0.0371	[0.023-0.051] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
590	chr6_ssto_hap7	691906	691907	rs576800986	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	6p22.1	OR5V1	rs576800986-A	0.0016	8E-6		0.994	[0.56-1.43] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
590	chr6_ssto_hap7	692429	692430	rs9378134	23393555	Jensen RA	2013-02-05	PLoS One	Genome-wide association study of retinopathy in individuals without diabetes.	Retinopathy in non-diabetics	19,411 European ancestry individuals	NA	6p22.1	OR12D3	rs9378134-A	0.04	3E-6		0.49	[0.29-0.69] unit increase	Illumina [2675979] (imputed)	N
590	chr6_ssto_hap7	695775	695776	rs238869	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	OR5V1	rs238869-C	NR	4E-8		0.0177413	[0.011-0.024] unit decrease	Affymetrix [323858] (imputed)	N
590	chr6_ssto_hap7	695775	695776	rs238869	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	OR5V1	rs238869-C	NR	2E-8		0.0181435	[0.012-0.024] unit decrease	Affymetrix [127266] (imputed)	N
590	chr6_ssto_hap7	695775	695776	rs238869	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6p22.1	OR5V1	rs238869-C	NR	2E-9		0.0190121	[0.013-0.025] unit decrease	Affymetrix [321114] (imputed)	N
590	chr6_ssto_hap7	695775	695776	rs238869	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	6p22.1	NR	rs238869-C	0.3771	3E-8		1.0341262	[1.02-1.05]	Affymetrix, Illumina [NR] (imputed)	N
590	chr6_ssto_hap7	695810	695811	rs3094549	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	OR5V1	rs3094549-C	NR	9E-18		0.0266542	[0.021-0.033] unit decrease	Affymetrix [321016] (imputed)	N
590	chr6_ssto_hap7	695810	695811	rs3094549	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p22.1	OR5V1	rs3094549-C	NR	3E-10		0.0212798	[0.015-0.028] unit decrease	Affymetrix [323123] (imputed)	N
590	chr6_ssto_hap7	695864	695865	rs3094548	21946350	Soler Artigas M	2011-09-25	Nat Genet	Genome-wide association and large-scale follow up identifies 16 new loci influencing lung function.	Pulmonary function	48,201 European ancestry individuals	46,411 European ancestry individuals	6p22.1	OR12D2	rs3094548-G	NR	1E-7	(FEV1)	0.029	[0.019-0.039] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
590	chr6_ssto_hap7	695880	695882	rs34671475	32227112	Lee MA	2020-03-30	Hum Mol Genet	Common variation at 16p11.2 is associated with glycosuria in pregnancy: Findings from a genome-wide association study in European women.	Glycosuria in pregnancy (offspring genotype effect)	747 European ancestry cases, 2,991 European ancestry controls	NA	6p22.1	NR	rs34671475-C	0.03003544	3E-8		2.608679	[2.269056177-2.948302017]	Illumina [9873828] (imputed)	N
590	chr6_ssto_hap7	695939	695940	rs74294664	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	150,266 East Asian ancestry individuals	NA	6p22.1		rs74294664-A	0.075018	4E-26		0.0570823	[0.046-0.068] unit increase	Illumina [13478778] (imputed)	N
590	chr6_ssto_hap7	696993	696994	rs9257809	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p22.1	NR	rs9257809-G	0.1004	3E-8	(EA)	0.0627	[0.041-0.085] unit decrease	Illumina [~ 11800000] (imputed)	N
590	chr6_ssto_hap7	696993	696994	rs9257809	27527254	Gharahkhani P	2016-08-12	Lancet Oncol	Genome-wide association studies in oesophageal adenocarcinoma and Barrett's oesophagus: a large-scale meta-analysis.	Barrett's esophagus  or Esophageal adenocarcinoma	6,167 European ancestry Barrett's oesophagus cases, 4,112 European ancestry esophageal adenocarcinoma cases, 17,159 European ancestry controls	NA	6p22.1	MHC	rs9257809-A		6E-9		1.23	[1.14-1.31]	Illumina [11951684] (imputed)	N
590	chr6_ssto_hap7	696993	696994	rs9257809	27527254	Gharahkhani P	2016-08-12	Lancet Oncol	Genome-wide association studies in oesophageal adenocarcinoma and Barrett's oesophagus: a large-scale meta-analysis.	Barrett's esophagus	6,167 European ancestry cases, 17,159 European ancestry controls	NA	6p22.1	MHC	rs9257809-A		6E-9		1.2634	[1.18-1.34]	Illumina [11942825] (imputed)	N
590	chr6_ssto_hap7	696993	696994	rs9257809	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p22.1	OR12D3, OR12D2	rs9257809-G	0.233	1E-20				Illumina [118177]	N
590	chr6_ssto_hap7	696993	696994	rs9257809	22961001	Su Z	2012-09-09	Nat Genet	Common variants at the MHC locus and at chromosome 16q24.1 predispose to Barrett's esophagus.	Barrett's esophagus	Up to 1,852 European ancestry cases, 5,172 European ancestry controls	5,986 European ancestry cases, 12,825 European ancestry controls	6p22.1	OR2D12, OR2D13, MHC	rs9257809-A	0.87	4E-9		1.21	[1.13-1.28]	Illumina [521744]	N
590	chr6_ssto_hap7	697249	697250	rs379157	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6p22.1	OR5V1	rs379157-G	NR	5E-8		0.0168887	[0.011-0.023] unit decrease	Affymetrix [321114] (imputed)	N
590	chr6_ssto_hap7	697249	697250	rs379157	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	6p22.1	NR	rs379157-?	NR	2E-9	(MIC-A)	0.426671	[0.29-0.57] unit decrease	Illumina [11901634] (imputed)	N
590	chr6_ssto_hap7	705948	705949	rs2073149	35215271	Almandil NB	2022-01-27	Pharmaceuticals (Basel)	Integration of Transcriptome and Exome Genotyping Identifies Significant Variants with Autism Spectrum Disorder.	Autism spectrum disorder	70 Arab ancestry cases, 132 Arab ancestry controls	NA	6p22.1	NA	rs2073149-A	0.5795	9E-9		0.2367	[0.143-0.3918]	Illumina [243345]	N
590	chr6_ssto_hap7	706631	706632	rs7775217	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Treatment or medication use - levothyroxine sodium (UKB data field 20003_1141191044)	18,688 European ancestry cases, 437,588 European ancestry controls	NA	6p22.1		rs7775217-A	0.007711	3E-13		0.46	[0.33-0.59] unit increase	NR [11842647] (imputed)	N
590	chr6_ssto_hap7	712857	712858	rs429479	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	6p22.1	OR12D2	rs429479-A	0.9041	2E-12		0.0471	[0.034-0.06] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
590	chr6_ssto_hap7	712857	712858	rs429479	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	OR5V1	rs429479-A	NR	5E-15		7.818	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
590	chr6_ssto_hap7	716870	716870	rs199997067	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mumps	31,227 European ancestry cases, 54,153 European ancestry controls	NA	6p22.1	NR	rs199997067-?	NR	5E-7		0.267	[0.16-0.37] unit decrease	Illumina [at least 560000] (imputed)	N
590	chr6_ssto_hap7	718200	718201	rs389931	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure in major depressive disorder-negative individuals	10,701 European ancestry cases, 39,677 European ancestry controls	NA	6p22.1	NR	rs389931-T	0.9064421	7E-6		1.1273957	[1.07-1.18]	Affymetrix [7791636] (imputed)	N
590	chr6_ssto_hap7	727509	727510	rs202217993	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Gynecologic disease	7,975 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs202217993-?		1E-8		1.18	[1.11-1.25]	Illumina [7645193] (imputed)	N
590	chr6_ssto_hap7	727509	727510	rs202217993	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Gynecologic disease	7,315 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs202217993-?		2E-9				Illumina [7645193] (imputed)	N
590	chr6_ssto_hap7	727536	727537	rs16894878	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	6p22.1	OR12D1P, OR11A1	rs16894878-A	0.001	1E-6		34.08	[3.52-329.69]	Illumina [1556551]	N
590	chr6_ssto_hap7	737405	737406	rs3128851	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	OR5V1, OR11A1	rs3128851-T	NR	9E-12		0.0207103	[0.015-0.027] unit decrease	Affymetrix [321016] (imputed)	N
590	chr6_ssto_hap7	739469	739470	rs3117191	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	6p22.1	Intergenic	rs3117191-T	NR	2E-6		0.022413	[0.013-0.032] unit decrease	Illumina [13520550] (imputed)	N
590	chr6_ssto_hap7	746419	746420	rs55740552	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p22.1	NR	rs55740552-?	NR	1E-10		0.1637	[0.11-0.21] unit decrease	Illumina [at least 560000] (imputed)	N
590	chr6_ssto_hap7	748621	748622	rs17177632	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	6p22.1		rs17177632-?	NR	5E-8				Affymetrix [NR] (imputed)	N
590	chr6_ssto_hap7	748621	748622	rs17177632	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p22.1		rs17177632-A	0.988	2E-8				Affymetrix [10369434] (imputed)	N
590	chr6_ssto_hap7	753534	753535	rs2023463	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in diabetes	70,762 European ancestry individuals, 20,967 African American individuals	NA	6p22.1	6M1-18	rs2023463-T	0.092	1E-11		1.01	[0.72-1.3] unit decrease	Affymetrix [NR] (imputed)	N
590	chr6_ssto_hap7	755995	755996	rs2523443	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p22.1	NR	rs2523443-A	0.1188	1E-12		0.013	[0.0095-0.0165] unit decrease	NR [7666894] (imputed)	N
590	chr6_ssto_hap7	772706	772707	rs2143668	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	6p22.1	OR2H1	rs2143668-A	0.8962	1E-7	(EA)	0.0033	[0.0021-0.0045] unit increase	Affymetrix [NR] (imputed)	N
590	chr6_ssto_hap7	772706	772707	rs2143668	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	6p22.1	OR2H1	rs2143668-A	0.896	1E-9		0.0033	[0.0021-0.0045] unit increase	Affymetrix [NR] (imputed)	N
590	chr6_ssto_hap7	774947	774948	rs4713226	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	UBDP1	rs4713226-A	NR	5E-10		0.0303439	[0.021-0.04] unit decrease	Affymetrix [321016] (imputed)	N
590	chr6_ssto_hap7	774947	774948	rs4713226	22610502	Kennedy RB	2012-05-19	Hum Genet	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IFN-alpha)	Up to 512 European ancestry individuals, up to 199 African American individuals	NA	6p22.1	OR2H1	rs4713226-A		2E-8	(AA)			Illumina [NR]	N
590	chr6_ssto_hap7	783506	783507	rs77454196	33002439	Jin G	2020-10-01	Lancet Oncol	Genetic risk, incident gastric cancer, and healthy lifestyle: a meta-analysis of genome-wide association studies and prospective cohort study.	Gastric cancer	10,254 Han Chinese ancestry cases, 10,914 Han Chinese ancestry controls	NA	6p22.1	NR	rs77454196-A	0.05	3E-6		0.78	NR	Affymetrix, Illumina [6957974] (imputed)	N
590	chr6_ssto_hap7	786233	786234	rs72500877	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	349,856 European ancestry individuals, 91,908 East Asian ancestry individuals	NA	6p22.1		rs72500877-T	NR	2E-9		0.0296	[0.02-0.039] unit increase	Affymetrix, Illumina [20529536] (imputed)	N
591	chr6_ssto_hap7	798772	798773	rs1233493	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs1233493-?		1E-8	(Superior corona radiata)			NR [8955960] (imputed)	N
591	chr6_ssto_hap7	798772	798773	rs1233493	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	6p22.1	NR	rs1233493-?		3E-9	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
591	chr6_ssto_hap7	798772	798773	rs1233493	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in non-diabetics	152,624 European ancestry individuals, 36,369 African American individuals	NA	6p22.1	MAS1L	rs1233493-A	0.89	9E-9		0.481	[0.32-0.65] unit increase	Affymetrix [NR] (imputed)	N
591	chr6_ssto_hap7	802261	802262	rs1233491	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p22.1	MAS1L, LOC729653	rs1233491-C	0.23	1E-20				Illumina [118177]	N
591	chr6_ssto_hap7	802261	802262	rs1233491	25827949	Kunz M	2015-05-04	Exp Dermatol	Genome-wide association study identifies new susceptibility loci for cutaneous lupus erythematosus.	Cutaneous lupus erythematosus	151 European ancestry cases, 1,288 European ancestry controls	219 European ancestry cases, 262 European ancestry controls	6p22.1	MAS1L	rs1233491-C	0.088	8E-10		2.2	[1.58-3.08]	Affymetrix [906600]	N
591	chr6_ssto_hap7	810739	810740	rs1233485	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p22.1		rs1233485-T	0.731	7E-12				Affymetrix [10369434] (imputed)	N
591	chr6_ssto_hap7	811516	811517	rs3131019	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	6p22.1		rs3131019-?	NR	5E-8				Affymetrix [NR] (imputed)	N
591	chr6_ssto_hap7	817945	817946	rs1233480	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p22.1	NR	rs1233480-T	0.1095	5E-8	(EA)	0.0586	[0.037-0.08] unit decrease	Illumina [~ 11800000] (imputed)	N
591	chr6_ssto_hap7	820755	820756	rs385816	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p22.1	NR	rs385816-?	NR	5E-7		0.0742	[0.045-0.103] unit increase	Illumina [at least 560000] (imputed)	N
591	chr6_ssto_hap7	827819	827820	rs2523430	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p22.1		rs2523430-G	0.513	3E-9				Affymetrix [10369434] (imputed)	N
591	chr6_ssto_hap7	828505	828506	rs12210150	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	153,512 East Asian ancestry individuals	NA	6p22.1		rs12210150-T	0.038389	1E-12		0.0584816	[0.042-0.075] unit increase	Illumina [13479135] (imputed)	N
591	chr6_ssto_hap7	851166	851167	rs362538	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	6p22.1		rs362538-G	0.902	2E-109		0.4	[-0.44--0.36] % decrease	Affymetrix [NR] (imputed)	N
591	chr6_ssto_hap7	851166	851167	rs362538	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular hemoglobin	20,714 Amish, White ancestry individuals, 447 Asian ancestry individuals, 11,246 Black individuals, 13,834 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	6p22.1		rs362538-C	NR	3E-10		0.2	[0.14-0.26] unit increase	Illumina [94681438]	N
591	chr6_ssto_hap7	856338	856339	rs3094575	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	OR2I1P	rs3094575-T	NR	2E-8		0.0185304	[0.012-0.025] unit decrease	Affymetrix [321016] (imputed)	N
591	chr6_ssto_hap7	860384	860385	rs453658	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	121,047 East Asian ancestry individuals	NA	6p22.1	NR	rs453658-G	0.306783	4E-12		0.030549	[0.022-0.039] SD units decrease	Affymetrix, Illumina [16286195] (imputed)	N
591	chr6_ssto_hap7	861435	861436	rs16895057	23456168	Hao Y	2013-03-03	Hum Genet	Genome-wide association study in Han Chinese identifies three novel loci for human height.	Height	6,534 Han Chinese ancestry individuals	1,881 Han Chinese ancestry individuals from 637 families	6p22.1	OR2I1P	rs16895057-T	0.95	3E-6		0.153	[0.088-0.218] unit increase	Affymetrix [1532051] (imputed)	N
592	chr6_ssto_hap7	942492	942493	rs62392942	28440896	Yin X	2017-04-25	Am J Med Genet B Neuropsychiatr Genet	Genome-wide meta-analysis identifies a novel susceptibility signal at CACNA2D3 for nicotine dependence.	Nicotine dependence	7,297 European ancestry cases, 5,577 European ancestry controls, 918 European ancestry whole genome sequenced cases, 921 European ancestry whole genome sequenced controls, African American cases, 1,500 African American controls	NA	6p22.1	GABBR1	rs62392942-T		1E-6		0.06	[0.04-0.08] unit decrease	Illumina [at least 3251541] (imputed)	N
592	chr6_ssto_hap7	944070	944071	rs111508444	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p22.1	NR	rs111508444-A	0.945	2E-19		1.522	[1.43-1.61]	Illumina [11270530] (imputed)	N
592	chr6_ssto_hap7	947603	947604	rs3095267	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine without aura	7,107 European ancestry cases, 69,427 European ancestry controls	NA	6p22.1	intergenic	rs3095267-?	0.81	9E-6		1.12	[1.06-1.18]	Affymetrix, Illumina [~ 2300000] (imputed)	N
592	chr6_ssto_hap7	947658	947659	rs3131856	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical thickness (MOSTest)	26,502 European ancestry individuals	NA	6p22.1	RALGPS2, ANGPTL1	rs3131856-?		2E-10				NR [7428630] (imputed)	N
592	chr6_ssto_hap7	947658	947659	rs3131856	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	6p22.1	LRRC16A, SCGN, SLC17A4, SLC17A1, SLC17A3, SLC17A2, TRIM38, HIST1H1A, HIST1H3A, HIST1H4A, HIST1H4B, HIST1H3B, HIST1H2AB, HIST1H2BB, HIST1H3C, HIST1H1C, HFE, HIST1H2BC, HIST1H2AC, HIST1H2BD, HIST1H2BE, HIST1H4D, HIST1H3D, HIST1H2AD, HIST1H2BF, HIST1H4E, HIST1H3G, HIST1H2BI, BTN3A2, BTN2A2, BTN3A1, BTN3A3, BTN2A1, BTN1A1, HMGN4, ABT1, ZNF322, HIST1H2BJ, HIST1H2AG, HIST1H2BK, HIST1H4I, HIST1H2AH, POM121L2, ZNF391, ZNF184, HIST1H2BL, HIST1H2AI, HIST1H3H, HIST1H2AJ, HIST1H2BM, HIST1H4J, HIST1H4K, HIST1H2AK, HIST1H2BN, HIST1H2AL, HIST1H1B, HIST1H3I, HIST1H4L, HIST1H3J, HIST1H2AM, HIST1H2BO, OR2B2, OR2B6, ZNF165, ZSCAN16, ZKSCAN8, ZSCAN9, ZKSCAN4, NKAPL, PGBD1, ZSCAN31, ZKSCAN3, ZSCAN12, ZSCAN23, GPX6, SCAND3, TRIM27, C6orf100, ZNF311, OR2W1, OR2B3, OR2J1, OR2J3, OR2J2, OR14J1, OR5V1, OR12D3, OR12D2, OR11A1, OR10C1, OR2H1, MAS1L, UBD, GABBR1, OR2H2	rs3131856-?		7E-16				NR [7428630] (imputed)	N
592	chr6_ssto_hap7	947658	947659	rs3131856	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p22.1	NR	rs3131856-?	NR	1E-7		0.1953	[0.12-0.27] unit decrease	Illumina [at least 560000] (imputed)	N
592	chr6_ssto_hap7	948742	948742	rs75140056	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Platelet count	8,850 African American individuals, 18,949 Hispanic/Latino individuals, 541 Asian ancestry individuals, 603 Native American ancestry individuals, 385 individuals	NA	6p22.1	NR	rs75140056-?	NR	6E-6		2.374875	[1.35-3.4] unit increase	Illumina [30743395] (imputed)	N
592	chr6_ssto_hap7	948742	948742	rs75140056	26805783	Schick UM	2016-01-21	Am J Hum Genet	Genome-wide Association Study of Platelet Count Identifies Ancestry-Specific Loci in Hispanic/Latino Americans.	Platelet count	12,491 Hispanic/Latin American individuals	7,170 Hispanic/Latin American individuals	6p22.1	MOG, GABBR1	rs75140056-C	0.39	1E-9		0.151	[0.10-0.20] unit decrease	Illumina [2232944] (imputed)	N
592	chr6_ssto_hap7	950252	950253	rs9257927	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs9257927-?		1E-8		1.66	[1.39-1.97]	Illumina [7645193] (imputed)	N
592	chr6_ssto_hap7	951988	951989	rs29232	19664746	Tse KP	2009-08-05	Am J Hum Genet	Genome-wide association study reveals multiple nasopharyngeal carcinoma-associated loci within the HLA region at chromosome 6p21.3.	Nasopharyngeal carcinoma	277 Han Chinese ancestry cases, 285 Han Chinese ancestry controls	635 Han Chinese ancestry cases, 1,640 Han Chinese ancestry controls	6p22.1	GABBR1	rs29232-A	0.46	9E-17		1.67	[1.48-1.88]	Illumina [480365]	N
592	chr6_ssto_hap7	952338	952339	rs3117318	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fish- and plant-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	6p22.1	LRRC16A, SCGN, SLC17A4, SLC17A1, SLC17A3, SLC17A2, TRIM38, HIST1H1A, HIST1H3A, HIST1H4A, HIST1H4B, HIST1H3B, HIST1H2AB, HIST1H2BB, HIST1H3C, HIST1H1C, HFE, HIST1H4C, HIST1H1T, HIST1H2BC, HIST1H2AC, HIST1H2BD, HIST1H2BE, HIST1H4D, HIST1H3D, HIST1H2AD, HIST1H2BF, HIST1H4E, HIST1H3G, HIST1H2BI, BTN3A2, BTN2A2, BTN3A1, BTN3A3, BTN2A1, BTN1A1, HMGN4, ABT1, ZNF322, HIST1H2BJ, HIST1H2AG, HIST1H2BK, HIST1H4I, HIST1H2AH, PRSS16, POM121L2, ZNF391, ZNF184, HIST1H2BL, HIST1H2AI, HIST1H3H, HIST1H2AJ, HIST1H2BM, HIST1H4J, HIST1H4K, HIST1H2AK, HIST1H2BN, HIST1H2AL, HIST1H1B, HIST1H3I, HIST1H4L, HIST1H3J, HIST1H2AM, HIST1H2BO, OR2B2, OR2B6, ZNF165, ZSCAN16, ZKSCAN8, ZSCAN9, ZKSCAN4, NKAPL, PGBD1, ZSCAN31, ZKSCAN3, ZSCAN12, ZSCAN23, GPX6, SCAND3, TRIM27, C6orf100, ZNF311, OR2W1, OR2B3, OR2J1, OR2J3, OR2J2, OR14J1, OR5V1, OR12D3, OR12D2, OR11A1, OR10C1, OR2H1, MAS1L, UBD, GABBR1, OR2H2	rs3117318-?	NR	7E-9		0.0168393	[0.011-0.023] unit increase	Affymetrix [25921788] (imputed)	N
592	chr6_ssto_hap7	952442	952443	rs3131854	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p22.1		rs3131854-T	0.213	6E-18				Affymetrix [10369434] (imputed)	N
592	chr6_ssto_hap7	959511	959512	rs188289856	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p22.1	NR	rs188289856-?	NR	6E-8		0.2325	[0.15-0.32] unit increase	Illumina [at least 560000] (imputed)	N
592	chr6_ssto_hap7	962775	962776	rs1233367	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6p22.1	MOG	rs1233367-G	NR	3E-8		0.0181448	[0.012-0.025] unit decrease	Affymetrix [321114] (imputed)	N
592	chr6_ssto_hap7	963870	963871	rs9468569	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p22.1	MOG, ZFP57, ZDHHC20P1	rs9468569-A	0.01203611	1E-16	(EA, Alpha-2-macroglobulin receptor-associated protein)	1.631	[1.25-2.01] unit increase	Affymetrix [509946]	N
592	chr6_ssto_hap7	964667	964668	rs29234	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	6p22.1	Intergenic	rs29234-?	NR	2E-8		2.219	[NR]	Affymetrix [492217] (imputed)	N
592	chr6_ssto_hap7	966871	966872	rs2252711	23284291	Hancock DB	2012-12-20	PLoS Genet	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (smoking interaction)	50,047 European ancestry individuals	NA	6p22.1	MOG	rs2252711-T	NR	4E-7	(FEV1/FVC, Ever-smoking)			NR [~ 2500000] (imputed)	N
592	chr6_ssto_hap7	967499	967500	rs16895223	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	MOG	rs16895223-G	NR	4E-10		0.0263599	[0.018-0.035] unit decrease	Affymetrix [321016] (imputed)	N
592	chr6_ssto_hap7	968709	968710	rs182971160	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p22.1	NR	rs182971160-?	NR	2E-7		0.3024	[0.19-0.42] unit increase	Illumina [at least 560000] (imputed)	N
592	chr6_ssto_hap7	974563	974564	rs3130253	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p22.1	MOG	rs3130253-A		1E-44		0.053	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
592	chr6_ssto_hap7	984887	984888	rs28367493	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p22.1		rs28367493-?	NR	2E-11		0.0217788	[0.016-0.028] unit decrease	Affymetrix [20259828] (imputed)	N
592	chr6_ssto_hap7	986099	986100	rs75834742	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	NR	rs75834742-?	NR	6E-7		4.996	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
592	chr6_ssto_hap7	986715	986716	rs396660	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	6p22.1	NR	rs396660-?	NR	3E-10	(MIC-A)	0.504823	[0.35-0.66] unit increase	Illumina [11901634] (imputed)	N
592	chr6_ssto_hap7	987415	987416	rs9257953	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	91,908 East Asian ancestry individuals	NA	6p22.1		rs9257953-A	0.223075	3E-9		0.0321111	[0.022-0.043] unit increase	Illumina [13469940] (imputed)	N
592	chr6_ssto_hap7	988265	988266	rs17369215	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	6p22.1	Intergenic	rs17369215-T	0.2278	2E-11	(MTAG)	0.0183	[0.013-0.024] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
592	chr6_ssto_hap7	988670	988671	rs17184549	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	6p22.1	Intergenic	rs17184549-A	0.2165	1E-8	(MTAG)	0.0124	[0.0081-0.0167] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
592	chr6_ssto_hap7	988670	988671	rs17184549	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	6p22.1	Intergenic	rs17184549-A	0.2168	4E-11	(MTAG)	0.0133	[0.0094-0.0172] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
592	chr6_ssto_hap7	990097	990098	rs385492	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Uterine fibroids (MTAG)	5,236 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs385492-?		5E-6		1.0309278	[1.02-1.04]	Illumina [7645193] (imputed)	N
592	chr6_ssto_hap7	990097	990098	rs385492	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p22.1	HCG4, HCG4B, HCG8, HCG9, HLA-A, HLA-F, HLA-F-AS1, HLA-G, HLA-H, HLA-J, IFITM4P, LOC554223, MOG, PPP1R11, RNF39, ZFP57, ZNRD1, ZNRD1-AS1	rs385492-T		4E-9		1.06	[1.04-1.08]	Affymetrix, Illumina [NR]	N
592	chr6_ssto_hap7	990097	990098	rs385492	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	6p22.1	NR	rs385492-T	NR	1E-8		1.06	[NR]	Illumina [7158791] (imputed)	N
592	chr6_ssto_hap7	992750	992751	rs3117292	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	ZFP57	rs3117292-G	NR	4E-12		0.0204333	[0.015-0.026] unit decrease	Affymetrix [321016] (imputed)	N
592	chr6_ssto_hap7	992804	992805	rs9257985	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Gynecologic disease (multivariate analysis)	up to 7,975 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs9257985-?		2E-8	(uterine fibroid, uterine cervical cancer)			Illumina [7645193] (imputed)	N
592	chr6_ssto_hap7	1001372	1001373	rs3116813	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p22.1	NR	rs3116813-A	0.1026	6E-7	(EA)	0.0553	[0.034-0.077] unit decrease	Illumina [~ 11800000] (imputed)	N
592	chr6_ssto_hap7	1001497	1001498	rs3116812	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8 on Central Memory CD8+ T cell	2,910 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p22.1		rs3116812-G	0.2977	1E-8		0.1871	[0.12-0.25] unit decrease	Illumina [17945467] (imputed)	N
592	chr6_ssto_hap7	1004446	1004447	rs3131888	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	1,505 Ashkenazi Jewish founder cases, 2,553 Ashkenazi Jewish founder controls	NA	6p22.1	NR	rs3131888-C	NR	7E-6		1.2820514	[NR]	Illumina [up to 9792010] (imputed)	N
592	chr6_ssto_hap7	1005918	1005919	rs7764829	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p22.1		rs7764829-A	0.612	4E-25				Affymetrix [10369434] (imputed)	N
592	chr6_ssto_hap7	1006268	1006269	rs9278250	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6p22.1		rs9278250-C	0.247045	7E-12		0.019422151	[0.014-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
592	chr6_ssto_hap7	1009497	1009497	rs143539749	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	ZDHHC20P1	rs143539749-ATATATATTC	NR	3E-9		0.0217332	[0.015-0.029] unit decrease	Affymetrix [323858] (imputed)	N
592	chr6_ssto_hap7	1009497	1009497	rs143539749	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	ZDHHC20P1	rs143539749-ATATATATTC	NR	6E-9		0.0213619	[0.014-0.029] unit decrease	Affymetrix [127266] (imputed)	N
592	chr6_ssto_hap7	1009547	1009548	rs3116800	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	ZDHHC20P1	rs3116800-T	NR	2E-8		0.01833	[0.012-0.025] unit increase	Affymetrix [321016] (imputed)	N
592	chr6_ssto_hap7	1010816	1010817	rs3129055	19664746	Tse KP	2009-08-05	Am J Hum Genet	Genome-wide association study reveals multiple nasopharyngeal carcinoma-associated loci within the HLA region at chromosome 6p21.3.	Nasopharyngeal carcinoma	277 Han Chinese ancestry cases, 285 Han Chinese ancestry controls	635 Han Chinese ancestry cases, 1,640 Han Chinese ancestry controls	6p22.1	HLA-F	rs3129055-G	0.31	7E-11		1.51	[1.34-1.71]	Illumina [480365]	N
592	chr6_ssto_hap7	1011585	1011586	rs9258116	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p22.1		rs9258116-T	0.714	3E-9				Affymetrix [10369434] (imputed)	N
592	chr6_ssto_hap7	1011622	1011623	rs113510833	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	6p22.1	HLA-F, ZFP57	rs113510833-T	0.10919500000000004	3E-8		0.028025	[0.018-0.038] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
592	chr6_ssto_hap7	1012630	1012630	rs11276222	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	6p22.1	ZDHHC20P1	rs11276222-A	NR	5E-8		0.0161712	[0.01-0.022] unit increase	Affymetrix [321788] (imputed)	N
592	chr6_ssto_hap7	1020578	1020579	rs1611371	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p22.1		rs1611371-C	0.228	2E-20				Affymetrix [10369434] (imputed)	N
592	chr6_ssto_hap7	1026437	1026438	rs2517910	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	HLA-F	rs2517910-A	NR	3E-14		0.0214991	[0.016-0.027] unit increase	Affymetrix [321016] (imputed)	N
592	chr6_ssto_hap7	1028449	1028450	rs9258183	33002439	Jin G	2020-10-01	Lancet Oncol	Genetic risk, incident gastric cancer, and healthy lifestyle: a meta-analysis of genome-wide association studies and prospective cohort study.	Gastric cancer	10,254 Han Chinese ancestry cases, 10,914 Han Chinese ancestry controls	NA	6p22.1	NR	rs9258183-A	0.47	1E-5		1.1	NR	Affymetrix, Illumina [6957974] (imputed)	N
592	chr6_ssto_hap7	1028798	1028799	rs1362126	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal cancer	978 Austrian ancestry colorectal cancer cases, 636 Austrian ancestry advanced colorectal adenoma cases, 4,294 European ancestry controls	NA	6p22.1	Intergenic	rs1362126-?		1E-7		1.3338668	[NR]	Affymetrix [492217] (imputed)	N
592	chr6_ssto_hap7	1028798	1028799	rs1362126	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal cancer	978 Austrian ancestry cases, 4,294 European ancestry controls	NA	6p22.1	Intergenic	rs1362126-?		3E-7		1.3908206	[NR]	Affymetrix [492217] (imputed)	N
592	chr6_ssto_hap7	1030374	1030375	rs2072899	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p22.1	NR	rs2072899-?	NR	7E-18		0.1076	[0.083-0.132] unit increase	Illumina [at least 560000] (imputed)	N
592	chr6_ssto_hap7	1033251	1033252	rs1628578	34050765	Zhang L	2021-05-29	J Clin Endocrinol Metab	Joint genome-wide association analyses identified 49 novel loci for age at natural menopause.	Age at menopause	181,219 European ancestry individuals, 43,861 East Asian ancestry individuals	NA	6p22.1		rs1628578-A	0.71	3E-13		0.1	unit increase	Illumina [2093892] (imputed)	N
592	chr6_ssto_hap7	1033251	1033252	rs1628578	34050765	Zhang L	2021-05-29	J Clin Endocrinol Metab	Joint genome-wide association analyses identified 49 novel loci for age at natural menopause.	Age at menopause	181,219 European ancestry individuals	NA	6p22.1		rs1628578-A	0.71	2E-11		0.1	unit increase	Illumina [2398641] (imputed)	N
592	chr6_ssto_hap7	1033603	1033604	rs2735059	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	6p22.1	NR	rs2735059-A	0.43	3E-13		0.0136	[0.0099-0.0173] unit decrease	NR [NR]	N
592	chr6_ssto_hap7	1034405	1034406	rs885946	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	6p22.1	NR	rs885946-T	0.186879	3E-10		0.05062379	[0.035-0.066] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
592	chr6_ssto_hap7	1035062	1035063	rs60581484	33574277	Kawai Y	2021-02-11	NPJ Genom Med	Mapping of susceptible variants for cold medicine-related Stevens-Johnson syndrome by whole-genome resequencing.	Cold medicine-related Stevens-Johnson syndrome/toxic epidermal necrolysis (SJS/TEN) with severe ocular complications	133 Japanese ancestry cases, 418 Japanese ancestry controls	NA	6p22.1		rs60581484-A	0.218	2E-13		4.204		Illumina [7608150]	N
592	chr6_ssto_hap7	1043421	1043422	rs2523393	19525953	De Jager PL	2009-06-14	Nat Genet	Meta-analysis of genome scans and replication identify CD6, IRF8 and TNFRSF1A as new multiple sclerosis susceptibility loci.	Multiple sclerosis	2,624 European ancestry cases, 7,220 European ancestry controls	2,215 European ancestry cases, 2,116 European ancestry controls	6p22.1	HLA-B	rs2523393-A	0.59	1E-17		1.28	[1.18-1.39]	Affymetrix, Illumina [~ 2560000] (imputed)	N
592	chr6_ssto_hap7	1046668	1046669	rs374787445	31577861	Dai J	2019-10-31	Int J Cancer	Genome-wide association study of INDELs identified four novel susceptibility loci associated with lung cancer risk.	Lung cancer	20,871 European ancestry cases, 15,971 European ancestry controls, 2,331 Chinese ancestry cases, 3,077 Chinese ancestry controls	NA	6p22.1	HLA-F, AS1	rs374787445-D	0.18	7E-9		1.11	[1.07-1.15]	Illumina [484196]	N
593	chr6_ssto_hap7	1050015	1050016	rs9258224	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	HLA-F-AS1, MICE	rs9258224-A	NR	2E-8		0.0282221	[0.018-0.038] unit decrease	Affymetrix [321016] (imputed)	N
593	chr6_ssto_hap7	1060895	1060896	rs9258260	22412388	Kenny EE	2012-03-08	PLoS Genet	A genome-wide scan of Ashkenazi Jewish Crohn's disease suggests novel susceptibility loci.	Crohn's disease	737 Ashkenazi Jewish cases, 2,257  Ashkenazi Jewish controls	971 Ashkenazi Jewish cases, 2,124 Ashkenazi Jewish controls	6p22.1	UBD, HLA-A, HLA-G, HLA-F, MOG, GABBR1, HLA-H	rs9258260-T	0.104	2E-10		1.45	[1.21-1.68]	Affymetrix, Illumina [1060934] (imputed)	N
593	chr6_ssto_hap7	1063722	1063723	rs1633063	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Sleep duration	384,317 European ancestry individuals	NA	6p22.1		rs1633063-T	0.246	3E-9		0.01681	[0.011-0.022] unit decrease	Affymetrix, Illumina [10862567] (imputed)	N
593	chr6_ssto_hap7	1067861	1067862	rs1610633	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p22.1		rs1610633-G	0.752	5E-94				Affymetrix [10369434] (imputed)	N
593	chr6_ssto_hap7	1068524	1068525	rs1611284	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p22.1	XXbac-BPG170G13.31	rs1611284-G	NR	2E-9		0.0170381	[0.011-0.023] unit decrease	Affymetrix [319769] (imputed)	N
593	chr6_ssto_hap7	1068524	1068525	rs1611284	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p22.1	XXbac-BPG170G13.31	rs1611284-G	NR	2E-8		0.015981	[0.01-0.022] unit decrease	Affymetrix [319769] (imputed)	N
593	chr6_ssto_hap7	1070271	1070272	rs1737062	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p22.1		rs1737062-C	0.472	8E-23				Affymetrix [10369434] (imputed)	N
593	chr6_ssto_hap7	1072599	1072600	rs35794939	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antithrombotic agents)	67,653 European ancestry cases, 85,986 European ancestry controls, 54,220 East Asian ancestry cases, 124,506 East Asian ancestry controls	NA	6p22.1		rs35794939-G	NR	2E-11		0.086	[0.061-0.111] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
593	chr6_ssto_hap7	1073219	1073220	rs115635848	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	XXbac-BPG170G13.31	rs115635848-A	NR	9E-11		0.0221196	[0.015-0.029] unit decrease	Affymetrix [323858] (imputed)	N
593	chr6_ssto_hap7	1073219	1073220	rs115635848	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	XXbac-BPG170G13.31	rs115635848-A	NR	8E-11		0.0222067	[0.016-0.029] unit decrease	Affymetrix [127266] (imputed)	N
593	chr6_ssto_hap7	1073466	1073467	rs28986310	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	6p22.1	NR	rs28986310-T	0.0618266	2E-8		5.66	z score increase	NR [10847151] (imputed)	N
593	chr6_ssto_hap7	1073466	1073467	rs28986310	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	6p22.1	intergenic	rs28986310-T	0.061827	1E-7		5.292	z score increase	Illumina [18485882] (imputed)	N
593	chr6_ssto_hap7	1075232	1075233	rs1737030	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mononucleosis	17,457 European ancestry cases, 68,446 European ancestry controls	NA	6p22.1	NR	rs1737030-?	NR	8E-7		0.0636	[0.038-0.089] unit decrease	Illumina [at least 560000] (imputed)	N
593	chr6_ssto_hap7	1076359	1076360	rs1815741	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Non-small cell lung cancer	27,120 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	6p22.1	NR	rs1815741-C	0.92	3E-7		0.86	[0.81-0.91]	NR [NR] (imputed)	N
593	chr6_ssto_hap7	1076359	1076360	rs1815741	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Lung adenocarcinoma	15,581 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	6p22.1	NR	rs1815741-C	0.92	2E-7		0.84	[0.78-0.89]	NR [NR] (imputed)	N
593	chr6_ssto_hap7	1076669	1076670	rs3888722	30169916	Sun Y	2018-08-31	J Eur Acad Dermatol Venereol	Investigation of the Predisposing Factor of Pemphigus and its clinical subtype through a Genome-wide association and next generation sequence analysis.	Pemphigus foliaceus	65 Chinese ancestry cases, 844 Chinese ancestry controls	at least 49 Chinese ancestry cases, up to 996 Chinese ancestry controls	6p22.1	NR	rs3888722-?	NR	7E-9		2.74		Illumina [5546030] (imputed)	N
593	chr6_ssto_hap7	1085405	1085406	rs116603789	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p22.1	NR	rs116603789-?	NR	1E-6		0.2936	[0.17-0.41] unit increase	Illumina [at least 560000] (imputed)	N
593	chr6_ssto_hap7	1086361	1086362	rs1611236	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p22.1		rs1611236-A	0.678	4E-29				Affymetrix [10369434] (imputed)	N
593	chr6_ssto_hap7	1086361	1086362	rs1611236	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p22.1		rs1611236-A	0.678	6E-22				Affymetrix [10369434] (imputed)	N
593	chr6_ssto_hap7	1086361	1086362	rs1611236	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p22.1		rs1611236-A	0.678	7E-31				Affymetrix [10369434] (imputed)	N
593	chr6_ssto_hap7	1086361	1086362	rs1611236	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p22.1		rs1611236-A	0.678	4E-48				Affymetrix [10369434] (imputed)	N
593	chr6_ssto_hap7	1086361	1086362	rs1611236	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p22.1		rs1611236-A	0.678	8E-38				Affymetrix [10369434] (imputed)	N
593	chr6_ssto_hap7	1086361	1086362	rs1611236	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p22.1		rs1611236-A	0.678	1E-16				Affymetrix [10369434] (imputed)	N
593	chr6_ssto_hap7	1088799	1088800	rs9258357	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p22.1		rs9258357-T	0.163	4E-16				Affymetrix [10369434] (imputed)	N
593	chr6_ssto_hap7	1088799	1088800	rs9258357	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	6p22.1		rs9258357-T	0.163	3E-15				Affymetrix [10369434] (imputed)	N
593	chr6_ssto_hap7	1088799	1088800	rs9258357	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p22.1		rs9258357-T	0.163	3E-10				Affymetrix [10369434] (imputed)	N
593	chr6_ssto_hap7	1090478	1090479	rs9258375	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p22.1	NR	rs9258375-G	0.122	1E-12		0.0131	[0.0094-0.0168] unit decrease	NR [7666894] (imputed)	N
593	chr6_ssto_hap7	1090478	1090479	rs9258375	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA	6p22.1	NR	rs9258375-?	NR	8E-6		0.0571	[0.032-0.082] unit decrease	Illumina [at least 560000] (imputed)	N
593	chr6_ssto_hap7	1092063	1092064	rs114802991	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	6p22.1	HLA-G	rs114802991-G	0.993211	8E-9		0.072933	[0.048-0.098] unit decrease	Affymetrix [NR] (imputed)	N
593	chr6_ssto_hap7	1097547	1097548	rs1611207	32752121	Nedoszytko B	2020-07-31	Int J Mol Sci	Results from a Genome-Wide Association Study (GWAS) in Mastocytosis Reveal New Gene Polymorphisms Associated with WHO Subgroups.	Mastocytosis	234 European ancestry cases, 5,606 European ancestry controls	NA	6p22.1	HLA-V	rs1611207-A	0.3807	3E-13		2.105	[1.9-2.31]	Illumina [281811]	N
593	chr6_ssto_hap7	1097547	1097548	rs1611207	32752121	Nedoszytko B	2020-07-31	Int J Mol Sci	Results from a Genome-Wide Association Study (GWAS) in Mastocytosis Reveal New Gene Polymorphisms Associated with WHO Subgroups.	Cutaneous mastocytosis	141 European ancestry cases, 5,606 European ancestry controls	NA	6p22.1	HLA-V	rs1611207-A	0.3807	1E-8		2.01	[-18.0604-22.0804]	Illumina [281811]	N
593	chr6_ssto_hap7	1097700	1097701	rs45479291	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	229 European ancestry cases, 1,088 European ancestry controls	NA	6p22.1	HLA-V	rs45479291-?	NR	2E-16	(conditional on rs12524487and rs62392216)			Illumina [4388215] (imputed)	N
593	chr6_ssto_hap7	1100574	1100575	rs1737002	32771030	Tangtanatakul P	2020-08-08	Arthritis Res Ther	Meta-analysis of genome-wide association study identifies FBN2 as a novel locus associated with systemic lupus erythematosus in Thai population.	Systemic lupus erythematosus	487 Thai cases, 1,606 Thai controls	405 Thai cases, 1,590 Thai controls	6p22.1	HLA-V	rs1737002-A	0.08	2E-6		1.6334	[NR]	Illumina [421909] (imputed)	N
593	chr6_ssto_hap7	1102027	1102028	rs1633005	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p22.1	HCG4, HLA-G	rs1633005-A	0.282	7E-16				Illumina [118177]	N
593	chr6_ssto_hap7	1102642	1102643	rs2523414	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	6p22.1	NR	rs2523414-?	NR	6E-14		7.508	NR z score increase	Illumina [at least 830937] (imputed)	N
593	chr6_ssto_hap7	1105899	1105900	rs1611185	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	HLA-P	rs1611185-C	NR	2E-9		0.0171984	[0.012-0.023] unit decrease	Affymetrix [321016] (imputed)	N
593	chr6_ssto_hap7	1109176	1109177	rs1610660	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	6p22.1	RPL7AP7	rs1610660-G	0.19782	5E-16		0.036476128	[0.028-0.045] unit decrease	Affymetrix [93095623] (imputed)	N
593	chr6_ssto_hap7	1115231	1115232	rs9380141	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p22.1	HCG4, HLA-G	rs9380141-C	0.29	1E-6	(EA)	1.94	[1.48-2.55]	Illumina [up to 547389]	N
593	chr6_ssto_hap7	1118604	1118605	rs1611182	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	6p22.1	MICG	rs1611182-T	NR	4E-9		0.017276	[0.012-0.023] unit increase	Affymetrix [321788] (imputed)	N
593	chr6_ssto_hap7	1119603	1119604	rs1610707	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	6p22.1	MICG	rs1610707-A	0.359635	1E-13		0.02435493	[0.018-0.031] unit increase	Affymetrix [93095623] (imputed)	N
593	chr6_ssto_hap7	1124327	1124328	rs56221809	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	6p22.1		rs56221809-G	0.863227	8E-9		0.033593	[0.022-0.045] unit decrease	NR [11722792] (imputed)	N
593	chr6_ssto_hap7	1126508	1126509	rs201604542	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p22.1		rs201604542-?	NR	6E-13		0.105892	[0.076-0.135] unit increase	Affymetrix [20259828] (imputed)	N
593	chr6_ssto_hap7	1134236	1134237	rs1632941	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	6p22.1	NR	rs1632941-C	0.46	7E-10	(Conditioned on chr6:28129789)	0.015807396	[0.011-0.021] unit decrease	NR [~ 10000000] (imputed)	N
593	chr6_ssto_hap7	1134594	1134595	rs145023077	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs145023077-?		7E-8		1.06	[1.04-1.09]	Illumina [7645193] (imputed)	N
593	chr6_ssto_hap7	1134594	1134595	rs145023077	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs145023077-?		8E-9		1.83	[1.49-2.25]	Illumina [7645193] (imputed)	N
593	chr6_ssto_hap7	1136359	1136360	rs9380142	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	6p22.1	HLA-G	rs9380142-G	0.310253	5E-11		0.0409033	[0.029-0.053] unit decrease	Affymetrix [93095623] (imputed)	N
593	chr6_ssto_hap7	1136843	1136844	rs1611141	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	6p22.1	HCG4P8	rs1611141-G	0.499184	2E-24		0.031040031	[0.025-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
593	chr6_ssto_hap7	1137786	1137787	rs12662618	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	6p22.1	HCG4P8	rs12662618-C	0.1014	5E-15		0.04632551	[0.035-0.058] unit increase	Affymetrix [~ 2500000] (imputed)	N
593	chr6_ssto_hap7	1137786	1137787	rs12662618	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	6p22.1	HCG4P8	rs12662618-C	0.1014	5E-16		0.04778197	[0.036-0.059] unit decrease	Affymetrix [~ 2500000] (imputed)	N
593	chr6_ssto_hap7	1137786	1137787	rs12662618	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	6p22.1	HCG4P8	rs12662618-C	0.1015	1E-17		0.05062162	[0.039-0.062] unit decrease	Affymetrix [~ 2500000] (imputed)	N
593	chr6_ssto_hap7	1140265	1140266	rs9380145	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p22.1	NR	rs9380145-C	0.361	2E-21	(IFNAR2_of_CD20p)			Illumina [5084123] (imputed)	N
593	chr6_ssto_hap7	1144442	1144443	rs407238	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p22.1	HLA-G	rs407238-C	NR	4E-9		0.0168935	[0.011-0.023] unit decrease	Affymetrix [319769] (imputed)	N
593	chr6_ssto_hap7	1144442	1144443	rs407238	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p22.1	HLA-G	rs407238-C	NR	2E-8		0.0162062	[0.011-0.022] unit decrease	Affymetrix [319769] (imputed)	N
593	chr6_ssto_hap7	1144442	1144443	rs407238	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	HLA-G	rs407238-C	NR	7E-12		0.0196596	[0.014-0.025] unit increase	Affymetrix [321016] (imputed)	N
593	chr6_ssto_hap7	1144442	1144443	rs407238	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	23,963 European ancestry cases, 306,942 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	43,254 European ancestry cases, 1,471,118 European ancestry controls	6p22.1	HLA-G	rs407238-C	NR	4E-6		0.0336	unit decrease	Illumina [15409056] (imputed)	N
593	chr6_ssto_hap7	1144934	1144935	rs2517887	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	6p22.1	HLA-G	rs2517887-G	0.793716	2E-9		0.0146864	[0.0099-0.0195] unit decrease	Affymetrix [NR] (imputed)	N
593	chr6_ssto_hap7	1147321	1147323	rs34590927	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	6p22.1	NR	rs34590927-?	NR	4E-7		0.062	[0.038-0.086] unit decrease	Illumina [at least 560000] (imputed)	N
593	chr6_ssto_hap7	1147321	1147323	rs34590927	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	6p22.1	HLA-G, HLA-H	rs34590927-?	NR	4E-7		1.0638298	[1.04-1.09]	Illumina [13754664] (imputed)	N
593	chr6_ssto_hap7	1147394	1147395	rs1476570	30529582	Lu Y	2018-12-06	Gastroenterology	Large-scale Genome-wide Association Study of East Asians Identifies Loci Associated With Risk for Colorectal Cancer.	Colorectal cancer	22,775 East Asian ancestry cases, 47,731 East Asian ancestry controls	NA	6p22.1	HLA-G	rs1476570-A	0.376	7E-9		1.12	[1.08-1.16]	Affymetrix, Illumina [up to 10700000] (imputed)	N
593	chr6_ssto_hap7	1150434	1150435	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small LDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	1E-8		0.0338512	[0.022-0.046] unit decrease	NR [11722792] (imputed)	N
593	chr6_ssto_hap7	1150434	1150435	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium LDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	4E-8		0.0327944	[0.021-0.044] unit decrease	NR [11722792] (imputed)	N
593	chr6_ssto_hap7	1150434	1150435	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large LDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	3E-10		0.0370981	[0.026-0.049] unit decrease	NR [11722792] (imputed)	N
593	chr6_ssto_hap7	1150434	1150435	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in LDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	1E-9		0.0361295	[0.024-0.048] unit decrease	NR [11722792] (imputed)	N
593	chr6_ssto_hap7	1150434	1150435	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in IDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	2E-9		0.0345436	[0.023-0.046] unit decrease	NR [11722792] (imputed)	N
593	chr6_ssto_hap7	1150434	1150435	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol minus HDL-C levels	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	5E-10		0.0368197	[0.025-0.048] unit decrease	NR [11722792] (imputed)	N
593	chr6_ssto_hap7	1150434	1150435	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Remnant cholesterol (non-HDL, non-LDL -cholesterol)	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	3E-9		0.0352589	[0.024-0.047] unit decrease	NR [11722792] (imputed)	N
593	chr6_ssto_hap7	1150434	1150435	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium LDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	1E-8		0.0342027	[0.023-0.046] unit decrease	NR [11722792] (imputed)	N
593	chr6_ssto_hap7	1150434	1150435	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large LDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	4E-10		0.0369858	[0.025-0.049] unit decrease	NR [11722792] (imputed)	N
593	chr6_ssto_hap7	1150434	1150435	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in LDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	9E-10		0.036396	[0.025-0.048] unit decrease	NR [11722792] (imputed)	N
593	chr6_ssto_hap7	1150434	1150435	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in IDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	3E-10		0.0361572	[0.025-0.047] unit decrease	NR [11722792] (imputed)	N
593	chr6_ssto_hap7	1150434	1150435	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	LDL cholesterol levels	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	4E-10		0.0370623	[0.025-0.049] unit decrease	NR [11722792] (imputed)	N
593	chr6_ssto_hap7	1150434	1150435	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	5E-9		0.0347629	[0.023-0.046] unit decrease	NR [11722792] (imputed)	N
593	chr6_ssto_hap7	1150434	1150435	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	1E-8		0.0339143	[0.022-0.046] unit decrease	NR [11722792] (imputed)	N
593	chr6_ssto_hap7	1150434	1150435	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	4E-10		0.0372639	[0.026-0.049] unit decrease	NR [11722792] (imputed)	N
593	chr6_ssto_hap7	1150434	1150435	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large LDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	1E-10		0.0378589	[0.026-0.049] unit decrease	NR [11722792] (imputed)	N
593	chr6_ssto_hap7	1150434	1150435	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in LDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	1E-10		0.0379624	[0.026-0.05] unit decrease	NR [11722792] (imputed)	N
593	chr6_ssto_hap7	1150434	1150435	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small LDL particles	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	3E-8		0.0330855	[0.021-0.045] unit decrease	NR [11722792] (imputed)	N
593	chr6_ssto_hap7	1150434	1150435	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large LDL particles	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	7E-11		0.038717	[0.027-0.05] unit decrease	NR [11722792] (imputed)	N
593	chr6_ssto_hap7	1150434	1150435	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of LDL particles	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	5E-10		0.0371209	[0.025-0.049] unit decrease	NR [11722792] (imputed)	N
593	chr6_ssto_hap7	1150434	1150435	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Clinical LDL cholesterol levels	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	2E-10		0.0378905	[0.026-0.05] unit decrease	NR [11722792] (imputed)	N
593	chr6_ssto_hap7	1150434	1150435	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small LDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	2E-8		0.033257	[0.022-0.045] unit decrease	NR [11722792] (imputed)	N
593	chr6_ssto_hap7	1150434	1150435	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium VLDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	1E-11		0.0401155	[0.029-0.052] unit decrease	NR [11722792] (imputed)	N
593	chr6_ssto_hap7	1150434	1150435	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large LDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	2E-10		0.0376083	[0.026-0.049] unit decrease	NR [11722792] (imputed)	N
593	chr6_ssto_hap7	1150434	1150435	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in VLDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	4E-8		0.0327951	[0.021-0.044] unit decrease	NR [11722792] (imputed)	N
593	chr6_ssto_hap7	1150434	1150435	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in LDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	1E-9		0.0361619	[0.025-0.048] unit decrease	NR [11722792] (imputed)	N
593	chr6_ssto_hap7	1150434	1150435	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in IDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	3E-9		0.0342481	[0.023-0.046] unit decrease	NR [11722792] (imputed)	N
593	chr6_ssto_hap7	1150434	1150435	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	1E-8		0.0330288	[0.022-0.044] unit decrease	NR [11722792] (imputed)	N
593	chr6_ssto_hap7	1150434	1150435	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small LDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	4E-9		0.0352069	[0.024-0.047] unit decrease	NR [11722792] (imputed)	N
593	chr6_ssto_hap7	1150434	1150435	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	8E-11		0.0386497	[0.027-0.05] unit decrease	NR [11722792] (imputed)	N
593	chr6_ssto_hap7	1150434	1150435	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	2E-8		0.0333427	[0.022-0.045] unit decrease	NR [11722792] (imputed)	N
593	chr6_ssto_hap7	1150434	1150435	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large LDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	1E-10		0.0379659	[0.026-0.05] unit decrease	NR [11722792] (imputed)	N
593	chr6_ssto_hap7	1150434	1150435	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in IDL	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	2E-9		0.0344785	[0.023-0.046] unit decrease	NR [11722792] (imputed)	N
593	chr6_ssto_hap7	1150434	1150435	rs72843670	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein B levels	115,082 European ancestry individuals	NA	6p22.1		rs72843670-T	0.861632	9E-10		0.0364076	[0.025-0.048] unit decrease	NR [11722792] (imputed)	N
593	chr6_ssto_hap7	1153463	1153464	rs2394186	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	6p22.1	NR	rs2394186-G	0.2192	2E-8		0.0271	[0.018-0.037] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
593	chr6_ssto_hap7	1153584	1153585	rs28724990	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total free cholesterol levels	115,082 European ancestry individuals	NA	6p22.1		rs28724990-T	0.844316	4E-9		0.0325566	[0.022-0.043] unit decrease	NR [11722792] (imputed)	N
593	chr6_ssto_hap7	1153584	1153585	rs28724990	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total esterified cholesterol levels	115,082 European ancestry individuals	NA	6p22.1		rs28724990-T	0.844316	2E-8		0.0309173	[0.02-0.042] unit decrease	NR [11722792] (imputed)	N
593	chr6_ssto_hap7	1153584	1153585	rs28724990	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol levels	115,082 European ancestry individuals	NA	6p22.1		rs28724990-T	0.844316	1E-8		0.031549	[0.021-0.042] unit decrease	NR [11722792] (imputed)	N
593	chr6_ssto_hap7	1154873	1154873	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	2E-12		0.0298616	[0.022-0.038] unit increase	NR [11722792] (imputed)	N
593	chr6_ssto_hap7	1154873	1154873	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	2E-12		0.0298616	[0.022-0.038] unit increase	NR [11722792] (imputed)	N
593	chr6_ssto_hap7	1154873	1154873	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	1E-13		0.0318981	[0.023-0.04] unit increase	NR [11722792] (imputed)	N
593	chr6_ssto_hap7	1154873	1154873	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	1E-13		0.0318981	[0.023-0.04] unit increase	NR [11722792] (imputed)	N
593	chr6_ssto_hap7	1154873	1154873	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	2E-11		0.0287582	[0.02-0.037] unit increase	NR [11722792] (imputed)	N
593	chr6_ssto_hap7	1154873	1154873	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	2E-11		0.0287582	[0.02-0.037] unit increase	NR [11722792] (imputed)	N
593	chr6_ssto_hap7	1154873	1154873	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	6E-12		0.0290211	[0.021-0.037] unit increase	NR [11722792] (imputed)	N
593	chr6_ssto_hap7	1154873	1154873	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	6E-12		0.0290211	[0.021-0.037] unit increase	NR [11722792] (imputed)	N
593	chr6_ssto_hap7	1154873	1154873	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of apolipoprotein B to apolipoprotein A1 levels	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	9E-12		0.0295387	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
593	chr6_ssto_hap7	1154873	1154873	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of apolipoprotein B to apolipoprotein A1 levels	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	9E-12		0.0295387	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
593	chr6_ssto_hap7	1154873	1154873	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	2E-12		0.0296171	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
593	chr6_ssto_hap7	1154873	1154873	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	2E-12		0.0296171	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
593	chr6_ssto_hap7	1154873	1154873	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	9E-11		0.0275259	[0.019-0.036] unit increase	NR [11722792] (imputed)	N
593	chr6_ssto_hap7	1154873	1154873	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	9E-11		0.0275259	[0.019-0.036] unit increase	NR [11722792] (imputed)	N
593	chr6_ssto_hap7	1154873	1154873	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	2E-13		0.0307478	[0.023-0.039] unit decrease	NR [11722792] (imputed)	N
593	chr6_ssto_hap7	1154873	1154873	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	2E-13		0.0307478	[0.023-0.039] unit decrease	NR [11722792] (imputed)	N
593	chr6_ssto_hap7	1154873	1154873	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	2E-9		0.0253353	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
593	chr6_ssto_hap7	1154873	1154873	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	2E-9		0.0253353	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
593	chr6_ssto_hap7	1154873	1154873	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small LDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	5E-12		0.0303335	[0.022-0.039] unit decrease	NR [11722792] (imputed)	N
593	chr6_ssto_hap7	1154873	1154873	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small LDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	5E-12		0.0303335	[0.022-0.039] unit decrease	NR [11722792] (imputed)	N
593	chr6_ssto_hap7	1154873	1154873	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in IDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	2E-9		0.0257238	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
593	chr6_ssto_hap7	1154873	1154873	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in IDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	2E-9		0.0257238	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
593	chr6_ssto_hap7	1154873	1154873	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of IDL particles	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	7E-10		0.0268846	[0.018-0.035] unit decrease	NR [11722792] (imputed)	N
593	chr6_ssto_hap7	1154873	1154873	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of IDL particles	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	7E-10		0.0268846	[0.018-0.035] unit decrease	NR [11722792] (imputed)	N
593	chr6_ssto_hap7	1154873	1154873	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	4E-12		0.0285378	[0.02-0.037] unit decrease	NR [11722792] (imputed)	N
593	chr6_ssto_hap7	1154873	1154873	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	4E-12		0.0285378	[0.02-0.037] unit decrease	NR [11722792] (imputed)	N
593	chr6_ssto_hap7	1154873	1154873	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	4E-13		0.0301476	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
593	chr6_ssto_hap7	1154873	1154873	rs34922185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6p22.1		rs34922185-A,rs34922185-A	0.66921	4E-13		0.0301476	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
593	chr6_ssto_hap7	1155203	1155204	rs28728979	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	MICF	rs28728979-A	NR	3E-8		0.0362437	[0.023-0.049] unit decrease	Affymetrix [321016] (imputed)	N
593	chr6_ssto_hap7	1155767	1155768	rs2523761	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	NR	rs2523761-?	NR	6E-8		5.432	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
593	chr6_ssto_hap7	1156640	1156641	rs9258593	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6p22.1		rs9258593-?	NR	9E-6		1.05543	[1.03-1.08]	NR [685523]	N
593	chr6_ssto_hap7	1158388	1158389	rs17179234	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MRPL55	5,367 Icelandic ancestry individuals	NA	6p22.1		rs17179234-A	0.1077	3E-55		0.466688	[0.41-0.53] unit increase	Illumina [7506463] (imputed)	N
593	chr6_ssto_hap7	1158654	1158655	rs17185657	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	6p22.1	MICF	rs17185657-T	0.076717	2E-15		0.032850858	[0.025-0.041] unit increase	Affymetrix [93095623] (imputed)	N
593	chr6_ssto_hap7	1159130	1159131	rs9258644	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p22.1		rs9258644-?	NR	3E-17		0.0268138	[0.021-0.033] unit decrease	Affymetrix [20259828] (imputed)	N
593	chr6_ssto_hap7	1159480	1159481	rs58005484	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	6p22.1	MICF	rs58005484-T	0.140864	8E-28		0.035311565	[0.029-0.042] unit increase	Affymetrix [93095623] (imputed)	N
593	chr6_ssto_hap7	1159480	1159481	rs58005484	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	6p22.1	MICF	rs58005484-T	0.140853	1E-24		0.033428524	[0.027-0.04] unit decrease	Affymetrix [93095623] (imputed)	N
593	chr6_ssto_hap7	1159480	1159481	rs58005484	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	6p22.1	MICF	rs58005484-T	0.1409	2E-20		0.04769708	[0.038-0.058] unit increase	Affymetrix [~ 2500000] (imputed)	N
593	chr6_ssto_hap7	1165688	1165689	rs2523822	21570397	Lucena MI	2011-04-12	Gastroenterology	Susceptibility to amoxicillin-clavulanate-induced liver injury is influenced by multiple HLA class I and II alleles.	Drug-induced liver injury (amoxicillin-clavulanate)	201 European ancestry cases, 532 European ancestry controls	NA	6p22.1	HLA-A	rs2523822-?	NR	2E-10		2.3	[1.80-2.90]	Illumina [822927]	N
593	chr6_ssto_hap7	1166000	1166001	rs9258750	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6p22.1		rs9258750-G	0.176259	2E-14		0.023563657	[0.018-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
593	chr6_ssto_hap7	1166279	1166280	rs1611713	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p22.1		rs1611713-A	0.712	2E-64				Affymetrix [10369434] (imputed)	N
593	chr6_ssto_hap7	1166664	1166665	rs1611719	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	6p22.1	HLA-G	rs1611719-G	0.79027	5E-13		0.0174799	[0.013-0.022] unit increase	Affymetrix [NR] (imputed)	N
593	chr6_ssto_hap7	1166664	1166665	rs1611719	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	6p22.1	HLA-G	rs1611719-G	0.790195	1E-14		0.019154	[0.014-0.024] unit increase	Affymetrix [NR] (imputed)	N
593	chr6_ssto_hap7	1169360	1169361	rs2524035	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	6p22.1	intergenic	rs2524035-G	0.8188	3E-23		0.04626543	[0.037-0.055] unit decrease	Affymetrix [~ 2500000] (imputed)	N
593	chr6_ssto_hap7	1169723	1169724	rs1611747	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small LDL	115,082 European ancestry individuals	NA	6p22.1		rs1611747-T	0.604397	4E-10		0.0262493	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
593	chr6_ssto_hap7	1169723	1169724	rs1611747	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p22.1		rs1611747-T	0.604	9E-22				Affymetrix [10369434] (imputed)	N
593	chr6_ssto_hap7	1169874	1169875	rs2517827	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	MICF	rs2517827-A	NR	2E-10		0.0215463	[0.015-0.028] unit decrease	Affymetrix [323858] (imputed)	N
593	chr6_ssto_hap7	1169874	1169875	rs2517827	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	MICF	rs2517827-A	NR	8E-11		0.0219247	[0.015-0.029] unit decrease	Affymetrix [127266] (imputed)	N
593	chr6_ssto_hap7	1170020	1170021	rs34832458	31577861	Dai J	2019-10-31	Int J Cancer	Genome-wide association study of INDELs identified four novel susceptibility loci associated with lung cancer risk.	Lung cancer	20,871 European ancestry cases, 15,971 European ancestry controls, 2,331 Chinese ancestry cases, 3,077 Chinese ancestry controls	NA	6p22.1	HLA-G	rs34832458-T	0.39	1E-9		0.92	[0.89-0.94]	Illumina [484196]	N
593	chr6_ssto_hap7	1170084	1170085	rs3128900	33269293	Kannambath S	2020-10-16	Open Forum Infect Dis	Genome-Wide Association Study Identifies Novel Colony Stimulating Factor 1 Locus Conferring Susceptibility to Cryptococcosis in Human Immunodeficiency Virus-Infected South Africans.	Cryptococcosis in HIV infection	319 South African ancestry cases, 399 South African ancestry controls	NA	6p22.1	HLA-H	rs3128900-?	NR	5E-6		0.9658	[NR]	Illumina [2686126] (imputed)	N
593	chr6_ssto_hap7	1170084	1170085	rs3128900	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6p22.1		rs3128900-T	0.845434	2E-21		0.032471824	[0.026-0.039] unit decrease	Affymetrix [93095623] (imputed)	N
593	chr6_ssto_hap7	1170499	1170500	rs7760545	33574277	Kawai Y	2021-02-11	NPJ Genom Med	Mapping of susceptible variants for cold medicine-related Stevens-Johnson syndrome by whole-genome resequencing.	Cold medicine-related Stevens-Johnson syndrome/toxic epidermal necrolysis (SJS/TEN) with severe ocular complications	133 Japanese ancestry cases, 418 Japanese ancestry controls	NA	6p22.1		rs7760545-A	0.2594	4E-16		4.373		Illumina [7608150]	N
593	chr6_ssto_hap7	1173765	1173766	rs1611637	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	IgM levels	14,442 Icelandic ancestry individuals	2,157 Swedish ancestry individuals	6p22.1	HLA-G	rs1611637-A	0.4554	1E-21		0.11	NR SD units increase	Illumina [21568490] (imputed)	N
593	chr6_ssto_hap7	1174531	1174532	rs885932	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p22.1	NR	rs885932-A	0.190644	2E-12		0.026577342	[0.019-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
593	chr6_ssto_hap7	1177267	1177268	rs2523815	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p22.1	HLA-A	rs2523815-A	0.64	2E-22		1.12	[1.11-1.14]	Illumina [at least 560000] (imputed)	N
593	chr6_ssto_hap7	1177758	1177759	rs3132713	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	6p22.1		rs3132713-A	0.181	2E-27				Affymetrix [10369434] (imputed)	N
593	chr6_ssto_hap7	1178235	1178236	rs56213322	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	6p22.1		rs56213322-A	0.819527	5E-23		0.029193865	[0.023-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
593	chr6_ssto_hap7	1179557	1179558	rs2734963	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Oral cavity and pharyngeal cancer	1,223 European ancestry cases, 410,350 European ancestry controls	NA	6p22.1		rs2734963-T	0.193283	6E-7		1.2753475	NR	Affymetrix [7846216] (imputed)	N
594	chr6_ssto_hap7	1180957	1180958	rs2523809	22075330	Granada M	2011-11-08	J Allergy Clin Immunol	A genome-wide association study of plasma total IgE concentrations in the Framingham Heart Study.	IgE levels	6,819 European ancestry individuals	7,809 European ancestry indivduals	6p22.1	HLA-G	rs2523809-T	NR	4E-8		0.06	[NR] unit increase	Affymetrix [2540223] (imputed)	N
594	chr6_ssto_hap7	1182071	1182072	rs1611579	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6p22.1	HLA-H	rs1611579-C	0.122264	4E-17		0.051560964	[0.04-0.064] unit increase	Affymetrix [93095623] (imputed)	N
594	chr6_ssto_hap7	1182071	1182072	rs1611579	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p22.1	NR	rs1611579-C	0.098	8E-7	(EA)	0.058	[0.035-0.081] unit decrease	Illumina [~ 11800000] (imputed)	N
594	chr6_ssto_hap7	1182178	1182179	rs1611581	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	6p22.1	NR	rs1611581-C	0.682015	5E-8		0.0185265	[0.012-0.025] unit increase	Affymetrix [16577424] (imputed)	N
594	chr6_ssto_hap7	1184795	1184796	rs2523802	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	6p22.1	NR	rs2523802-?	NR	2E-8		0.088	[0.057-0.119] unit decrease	Illumina [at least 560000] (imputed)	N
594	chr6_ssto_hap7	1185927	1185928	rs2734950	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	6p22.1	HLA-H	rs2734950-T	0.402539	6E-12		0.01625928	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
594	chr6_ssto_hap7	1187200	1187201	rs2734947	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hypothyroidism	1,114 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	6p22.1		rs2734947-C	0.497362317	4E-13		0.35440555	[0.26-0.45] unit increase	Illumina [13429045] (imputed)	N
594	chr6_ssto_hap7	1203757	1203758	rs189370103	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	6p22.1	NR	rs189370103-?	NR	8E-6	(Native Hawaiian)	1.0607	[NR] unit increase	Illumina [up to 11892802] (imputed)	N
594	chr6_ssto_hap7	1207239	1207240	rs2517873	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Squamous cell lung carcinoma	8,350 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	6p22.1	NR	rs2517873-A	NR	2E-10		1.23	[1.15-1.31]	NR [NR] (imputed)	N
594	chr6_ssto_hap7	1207239	1207240	rs2517873	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Non-small cell lung cancer	27,120 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	6p22.1	NR	rs2517873-A	NR	5E-11		1.16	[1.11-1.21]	NR [NR] (imputed)	N
594	chr6_ssto_hap7	1207239	1207240	rs2517873	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Lung adenocarcinoma	15,581 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	6p22.1	NR	rs2517873-A	NR	3E-6		1.13	[1.08-1.20]	NR [NR] (imputed)	N
594	chr6_ssto_hap7	1207239	1207240	rs2517873	31326317	Dai J	2019-07-17	Lancet Respir Med	Identification of risk loci and a polygenic risk score for lung cancer: a large-scale prospective cohort study in Chinese populations.	Non-small cell lung cancer	13,327 Chinese ancestry cases, 13,793 European ancestry cases, 13,328 Chinese ancestry controls, 14,027 European ancestry controls	NA	6p22.1	MHC	rs2517873-A	0.145	5E-11		1.16	[1.11-1.21]	Illumina [~ 11000000] (imputed)	N
594	chr6_ssto_hap7	1220502	1220503	rs75460055	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p22.1	NR	rs75460055-T	0.039	5E-18	(conditional)	0.47	[0.3-0.64]	Illumina [11270530] (imputed)	N
594	chr6_ssto_hap7	1222005	1222006	rs1611399	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	HCG4B	rs1611399-C	NR	5E-8		0.0192493	[0.012-0.026] unit decrease	Affymetrix [323858] (imputed)	N
594	chr6_ssto_hap7	1222005	1222006	rs1611399	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	HCG4B	rs1611399-C	NR	4E-8		0.0194622	[0.013-0.026] unit decrease	Affymetrix [127266] (imputed)	N
594	chr6_ssto_hap7	1224829	1224830	rs9259819	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	6p22.1	HLA-J	rs9259819-G	0.5	2E-9		1.036	[1.02-1.05]	Affymetrix, Illumina [8307659] (imputed)	N
594	chr6_ssto_hap7	1228344	1228345	rs389725	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	6p22.1	HCG4B, HLA-U	rs389725-T	0.78328	3E-30		0.03487705	[0.029-0.041] unit decrease	Affymetrix [93095623] (imputed)	N
594	chr6_ssto_hap7	1229331	1229332	rs2975009	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	6p22.1	HCG4B, HLA-U	rs2975009-T	0.4651	7E-24		0.0380916	[0.031-0.046] unit increase	Affymetrix [~ 2500000] (imputed)	N
594	chr6_ssto_hap7	1230840	1230841	rs2471863	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p22.1	HLA-A	rs2471863-C	0.526	8E-7		0.057	[0.033-0.081] unit increase	Affymetrix, Illumina [7374092] (imputed)	N
594	chr6_ssto_hap7	1230890	1230891	rs2524005	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Varicose veins	22,037 European ancestry cases, 437,665 European ancestry controls, 474 East Asian ancestry cases, 178,252 East Asian ancestry controls	NA	6p22.1		rs2524005-A	NR	1E-12		0.0995	[0.072-0.127] unit decrease	Affymetrix, Illumina [25842955] (imputed)	N
594	chr6_ssto_hap7	1230890	1230891	rs2524005	22688191	Bergen SE	2012-06-12	Mol Psychiatry	Genome-wide association study in a Swedish population yields support for greater CNV and MHC involvement in schizophrenia compared with bipolar disorder.	Bipolar disorder and schizophrenia	2,111 European ancestry schizophrenia cases, 836 European ancestry bipolar disorder cases, 2,535 European ancestry controls	NA	6p22.1	other genes, MHC	rs2524005-?	NR	5E-7		1.32	[NR]	Affymetrix [745006]	N
594	chr6_ssto_hap7	1231905	1231906	rs72498354	32339537	Roberts V	2020-04-24	J Invest Dermatol	Genome wide association study identifies genetic associations with perceived age.	Youthful appearance (self-reported)	423,992 European ancestry individuals	NA	6p22.1	HLA-A	rs72498354-C	0.960927	4E-9		0.933287	NR	Affymetrix [~ 9600000] (imputed)	N
594	chr6_ssto_hap7	1232839	1232840	rs410930	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	6p22.1		rs410930-G	0.437235	1E-8		0.024544	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
594	chr6_ssto_hap7	1233080	1233081	rs1611337	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6p22.1		rs1611337-G	0.437603	2E-14		0.0312596	[0.023-0.039] unit decrease	NR [11722792] (imputed)	N
594	chr6_ssto_hap7	1233080	1233081	rs1611337	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	6p22.1		rs1611337-G	0.437688	8E-10		0.0255967	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
594	chr6_ssto_hap7	1233080	1233081	rs1611337	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p22.1		rs1611337-G	0.437603	8E-16		0.0334002	[0.025-0.042] unit decrease	NR [11722792] (imputed)	N
594	chr6_ssto_hap7	1233080	1233081	rs1611337	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6p22.1		rs1611337-G	0.437603	9E-12		0.0276947	[0.02-0.036] unit decrease	NR [11722792] (imputed)	N
594	chr6_ssto_hap7	1233080	1233081	rs1611337	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6p22.1		rs1611337-G	0.437603	1E-13		0.0306584	[0.023-0.039] unit increase	NR [11722792] (imputed)	N
594	chr6_ssto_hap7	1233080	1233081	rs1611337	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	6p22.1		rs1611337-G	0.437688	4E-9		0.0245909	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
594	chr6_ssto_hap7	1233080	1233081	rs1611337	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	6p22.1		rs1611337-G	0.437603	2E-9		0.0245327	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
594	chr6_ssto_hap7	1233080	1233081	rs1611337	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p22.1		rs1611337-G	0.437603	5E-18		0.036723	[0.028-0.045] unit increase	NR [11722792] (imputed)	N
594	chr6_ssto_hap7	1233080	1233081	rs1611337	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6p22.1		rs1611337-G	0.437603	5E-10		0.0250212	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
594	chr6_ssto_hap7	1233080	1233081	rs1611337	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	6p22.1		rs1611337-G	0.437688	5E-8		0.0224294	[0.014-0.03] unit increase	NR [11722792] (imputed)	N
594	chr6_ssto_hap7	1233080	1233081	rs1611337	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p22.1		rs1611337-G	0.437603	4E-17		0.0351407	[0.027-0.043] unit increase	NR [11722792] (imputed)	N
594	chr6_ssto_hap7	1233080	1233081	rs1611337	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6p22.1		rs1611337-G	0.437603	7E-11		0.02633	[0.018-0.034] unit increase	NR [11722792] (imputed)	N
594	chr6_ssto_hap7	1233321	1233322	rs9259970	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6p22.1		rs9259970-G	0.717498	4E-15		0.0371322	[0.028-0.046] unit decrease	NR [11722792] (imputed)	N
594	chr6_ssto_hap7	1233321	1233322	rs9259970	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	6p22.1		rs9259970-G	0.717498	5E-8		0.0259759	[0.017-0.035] unit decrease	NR [11722792] (imputed)	N
594	chr6_ssto_hap7	1233321	1233322	rs9259970	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	6p22.1		rs9259970-G	0.717498	6E-10		0.0286546	[0.02-0.038] unit decrease	NR [11722792] (imputed)	N
594	chr6_ssto_hap7	1234773	1234774	rs3098023	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium HDL	115,082 European ancestry individuals	NA	6p22.1		rs3098023-A	0.863945	3E-9		0.0367615	[0.025-0.049] unit increase	NR [11722792] (imputed)	N
594	chr6_ssto_hap7	1234773	1234774	rs3098023	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large HDL	115,082 European ancestry individuals	NA	6p22.1		rs3098023-A	0.863945	6E-9		0.0349811	[0.023-0.047] unit increase	NR [11722792] (imputed)	N
594	chr6_ssto_hap7	1234773	1234774	rs3098023	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in HDL	115,082 European ancestry individuals	NA	6p22.1		rs3098023-A	0.863945	2E-8		0.0348764	[0.023-0.047] unit increase	NR [11722792] (imputed)	N
594	chr6_ssto_hap7	1234773	1234774	rs3098023	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium HDL	115,082 European ancestry individuals	NA	6p22.1		rs3098023-A	0.863945	3E-13		0.0429887	[0.031-0.055] unit increase	NR [11722792] (imputed)	N
594	chr6_ssto_hap7	1234773	1234774	rs3098023	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in HDL	115,082 European ancestry individuals	NA	6p22.1		rs3098023-A	0.863945	9E-11		0.0369227	[0.026-0.048] unit increase	NR [11722792] (imputed)	N
594	chr6_ssto_hap7	1234788	1234789	rs28749114	33002439	Jin G	2020-10-01	Lancet Oncol	Genetic risk, incident gastric cancer, and healthy lifestyle: a meta-analysis of genome-wide association studies and prospective cohort study.	Gastric cancer	10,254 Han Chinese ancestry cases, 10,914 Han Chinese ancestry controls	NA	6p22.1	NR	rs28749114-A	0.6	5E-9		1.14	NR	Affymetrix, Illumina [6957974] (imputed)	N
594	chr6_ssto_hap7	1234788	1234789	rs28749114	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p22.1	HLA-A	rs28749114-G	0.359	4E-17	(Tapasin-related protein, TAPBPL.6364.7.3)	0.22	[0.16-0.28] unit decrease	Affymetrix [10572788] (imputed)	N
594	chr6_ssto_hap7	1235046	1235047	rs112580141	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HVEM on naive CD8+ T cell	1,247 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p22.1		rs112580141-C	0.37079	2E-8		0.2622	[0.17-0.35] unit increase	Illumina [16410374] (imputed)	N
594	chr6_ssto_hap7	1235281	1235282	rs9260013	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8 on Central Memory CD8+ T cell	2,910 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p22.1		rs9260013-T	0.19942	5E-11		0.2579	[0.18-0.33] unit increase	Illumina [17945467] (imputed)	N
594	chr6_ssto_hap7	1235646	1235647	rs453325	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	6p22.1	HLA-A	rs453325-A	0.7549	2E-8		0.002	[0.0014-0.0026] unit decrease	Affymetrix [15275733] (imputed)	N
594	chr6_ssto_hap7	1236024	1236025	rs2860580	27436580	Cui Q	2016-07-19	Hum Mol Genet	An extended genome-wide association study identifies novel susceptibility loci for nasopharyngeal carcinoma.	Nasopharyngeal carcinoma	1,583 Southern Chinese ancestry cases, 2,979 Southern Chinese ancestry controls	5,463 Southern Chinese ancestry cases, 5,591 Southern Chinese ancestry controls	6p22.1	NR	rs2860580-?	0.62	3E-31		1.89	[1.69-2.13]	Illumina [463250]	N
594	chr6_ssto_hap7	1236024	1236025	rs2860580	20512145	Bei JX	2010-05-30	Nat Genet	A genome-wide association study of nasopharyngeal carcinoma identifies three new susceptibility loci.	Nasopharyngeal carcinoma	1,583 Chinese ancestry cases, 1,894 Chinese ancestry controls	3,507 Chinese ancestry cases, 3,063 Chinese ancestry controls, 284  Chinese ancestry trios	6p22.1	HLA-A	rs2860580-?	0.62	5E-67		1.72	[1.61-1.82]	Illumina [464328]	N
594	chr6_ssto_hap7	1236109	1236110	rs3916500	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p22.1	HLA-A	rs3916500-A	0.94	7E-6		0.0619	[0.035-0.089] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
594	chr6_ssto_hap7	1237167	1237168	rs28749130	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	6p22.1	HLA-A	rs28749130-A	0.290175	2E-20		0.05423409	[0.043-0.066] unit increase	Affymetrix [93095623] (imputed)	N
594	chr6_ssto_hap7	1237227	1237228	rs28749131	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6p22.1	NR	rs28749131-G	0.6706	2E-10		1.041016	[1.03-1.05]	Affymetrix [15688218] (imputed)	N
594	chr6_ssto_hap7	1238139	1238140	rs13203830	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p22.1	NR	rs13203830-?	NR	8E-10				Affymetrix [~ 8270000] (imputed)	N
594	chr6_ssto_hap7	1238366	1238367	rs9260078	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein B2M	5,353 Icelandic ancestry individuals	NA	6p22.1		rs9260078-A	0.3408	3E-12		0.126365	[0.091-0.162] unit increase	Illumina [7506463] (imputed)	N
594	chr6_ssto_hap7	1238550	1238551	rs1632887	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		6p22.1	HLA-A	rs1632887-T	0.725853	2E-12		0.0110934	[0.008-0.0142] unit decrease	Affymetrix [12370749]	N
594	chr6_ssto_hap7	1238613	1238614	rs138847126	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental extreme longevity (95 years and older)	1,339 middle-aged British cases, 40,934 middle-aged British controls	NA	6p22.1	NR	rs138847126-?	NR	7E-6		0.01176	[0.0066-0.0169] unit decrease	Affymetrix [9658292] (imputed)	N
594	chr6_ssto_hap7	1239157	1239158	rs534723171	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p22.1	NR	rs534723171-T	0.061	2E-30	(conditional)	2.735	[2.56-2.91]	Illumina [11270530] (imputed)	N
594	chr6_ssto_hap7	1239692	1239693	rs1143146	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	6p22.1	HLA-A	rs1143146-G	0.462795	8E-17		0.019093748	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
594	chr6_ssto_hap7	1239712	1239713	rs41546314	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p22.1		rs41546314-T	0.309983	5E-23		1.0479736	[1.04-1.05]	Affymetrix, Illumina [9851866] (imputed)	N
594	chr6_ssto_hap7	1239811	1239812	rs9260127	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Triglycerides	429,011 European ancestry individuals	NA	6p22.1		rs9260127-G	0.45	7E-14		0.015	mmol/L decrease	NR [NR] (imputed)	N
594	chr6_ssto_hap7	1239811	1239812	rs9260127	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	6p22.1		rs9260127-G	0.45	3E-20				NR [NR] (imputed)	N
594	chr6_ssto_hap7	1239811	1239812	rs9260127	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	High density lipoprotein cholesterol levels	392,965 European ancestry individuals	NA	6p22.1		rs9260127-G	0.45	4E-13		0.013	mmol/L decrease	NR [NR] (imputed)	N
594	chr6_ssto_hap7	1239811	1239812	rs9260127	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	6p22.1		rs9260127-G	0.45	8E-12		0.01	% increase	NR [NR] (imputed)	N
594	chr6_ssto_hap7	1239811	1239812	rs9260127	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Aspartate aminotransferase levels	424,778 European ancestry individuals	NA	6p22.1		rs9260127-G	0.45	4E-17		0.016	U/L decrease	NR [NR] (imputed)	N
594	chr6_ssto_hap7	1239811	1239812	rs9260127	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	6p22.1	HCG4P5	rs9260127-C	0.554534	6E-12		0.01662031	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
594	chr6_ssto_hap7	1240064	1240065	rs79361534	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p22.1	HLA-A	rs79361534-A		1E-36		0.036	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
594	chr6_ssto_hap7	1240100	1240101	rs1136689	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	6p22.1	HLA-A	rs1136689-C	0.145613	8E-12		0.022252768	[0.016-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
594	chr6_ssto_hap7	1240134	1240135	rs1136692	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	HLA-A, HCG4P5	rs1136692-A	NR	1E-9		0.0207185	[0.014-0.027] unit decrease	Affymetrix [323858] (imputed)	N
594	chr6_ssto_hap7	1240134	1240135	rs1136692	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	HLA-A, HCG4P5	rs1136692-A	NR	1E-9		0.0208558	[0.014-0.028] unit decrease	Affymetrix [127266] (imputed)	N
594	chr6_ssto_hap7	1240363	1240364	rs9260151	29404672	Roshandel D	2018-02-05	Diabetologia	Meta-genome-wide association studies identify a locus on chromosome 1 and multiple variants in the MHC region for serum C-peptide in type 1 diabetes.	C-peptide levels in type I diabetes	3,479 European ancestry individuals	NA	6p22.1	MHC, HLA-A	rs9260151-T	0.09	8E-8				Illumina [7988630] (imputed)	N
594	chr6_ssto_hap7	1240447	1240448	rs3173420	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	6p22.1	HLA-A	rs3173420-A	0.525347	1E-30		0.02624179	[0.022-0.031] unit increase	Affymetrix [93095623] (imputed)	N
594	chr6_ssto_hap7	1240561	1240562	rs9256983	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p22.1	NR	rs9256983-?	NR	5E-6		0.0485	[0.028-0.069] unit increase	Illumina [at least 560000] (imputed)	N
594	chr6_ssto_hap7	1240572	1240573	rs9260155	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p22.1	HLA-A	rs9260155-C	0.420482	2E-24		0.027366111	[0.022-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
594	chr6_ssto_hap7	1240689	1240690	rs3132687	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	6p22.1	NR	rs3132687-?	NR	2E-11	(MIC-A)	0.664201	[0.47-0.86] unit increase	Illumina [11901634] (imputed)	N
594	chr6_ssto_hap7	1241022	1241023	rs9260164	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	6p22.1	HLA-A	rs9260164-C	0.737668	6E-21		0.0151662	[0.012-0.018] unit decrease	Affymetrix [12370749]	N
594	chr6_ssto_hap7	1241810	1241811	rs9260194	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycoprotein acetyls levels	115,082 European ancestry individuals	NA	6p22.1		rs9260194-C	0.511331	5E-17		0.0344827	[0.026-0.043] unit decrease	NR [11722792] (imputed)	N
594	chr6_ssto_hap7	1241847	1241848	rs2975059	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p22.1		rs2975059-T	0.673	3E-55				Affymetrix [10369434] (imputed)	N
594	chr6_ssto_hap7	1241847	1241848	rs2975059	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6p22.1	HLA-A	rs2975059-C	0.327132	2E-74		0.04847726	[0.043-0.054] unit increase	Affymetrix [93095623] (imputed)	N
594	chr6_ssto_hap7	1241947	1241948	rs17882753	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	6p22.1	HLA-A	rs17882753-T	0.1254	6E-21		0.05153304	[0.041-0.062] unit increase	Affymetrix [~ 2500000] (imputed)	N
594	chr6_ssto_hap7	1242648	1242649	rs1061235	21428769	McCormack M	2011-03-24	N Engl J Med	HLA-A*3101 and carbamazepine-induced hypersensitivity reactions in Europeans.	Adverse response to carbamazepine	65 European ancestry cases, 3,987 European ancestry controls	80 European ancestry cases, 257 European ancestry controls	6p22.1	HLA-A*3101	rs1061235-?	NR	1E-7		9.12	[4.03-20.65]	Illumina [~ 1200000] (imputed)	N
594	chr6_ssto_hap7	1243236	1243237	rs34941730	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p22.1	HLA-A	rs34941730-G	0.119	2E-9		0.102	[0.069-0.135] unit decrease	Affymetrix, Illumina [7374092] (imputed)	N
594	chr6_ssto_hap7	1243883	1243884	rs376253	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	6p22.1	HLA-A	rs376253-A	NR	3E-10		0.0221166	[0.015-0.029] unit decrease	Affymetrix [321114] (imputed)	N
594	chr6_ssto_hap7	1244123	1244124	rs17179564	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	82,810 East Asian ancestry individuals	NA	6p22.1		rs17179564-A	0.36573	6E-10		0.0301926	[0.021-0.04] unit increase	Illumina [13467171] (imputed)	N
594	chr6_ssto_hap7	1244178	1244179	rs2735099	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p22.1	NR	rs2735099-T	0.417	3E-26	(IFNAR2_of_CD20p)			Illumina [5084123] (imputed)	N
594	chr6_ssto_hap7	1244411	1244412	rs2248162	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	HLA-A	rs2248162-T	NR	3E-8		0.0179351	[0.012-0.024] unit decrease	Affymetrix [323858] (imputed)	N
594	chr6_ssto_hap7	1245235	1245236	rs2517720	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6p22.1	HLA-A	rs2517720-C	0.555569	1E-14		0.022822132	[0.017-0.029] unit increase	Affymetrix [93095623] (imputed)	N
594	chr6_ssto_hap7	1246143	1246144	rs1655901	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	6p22.1	HLA-A	rs1655901-C	0.557583	3E-22		0.02534704	[0.02-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
594	chr6_ssto_hap7	1246224	1246225	rs9260313	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p22.1	HLA-A	rs9260313-C		5E-24		0.02	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
594	chr6_ssto_hap7	1246224	1246225	rs9260313	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	6p22.1	HLA-A	rs9260313-C	0.2875	1E-15		0.03200038	[0.024-0.04] unit increase	Affymetrix [~ 2500000] (imputed)	N
594	chr6_ssto_hap7	1246224	1246225	rs9260313	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	6p22.1	HLA-A	rs9260313-C	0.2876	1E-15		0.03178619	[0.024-0.04] unit increase	Affymetrix [~ 2500000] (imputed)	N
594	chr6_ssto_hap7	1247419	1247420	rs2517713	19664746	Tse KP	2009-08-05	Am J Hum Genet	Genome-wide association study reveals multiple nasopharyngeal carcinoma-associated loci within the HLA region at chromosome 6p21.3.	Nasopharyngeal carcinoma	277 Han Chinese ancestry cases, 285 Han Chinese ancestry controls	635 Han Chinese ancestry cases, 1,640 Han Chinese ancestry controls	6p22.1	HLA-A	rs2517713-A	0.62	4E-20		1.88	[1.65-2.15]	Illumina [480365]	N
594	chr6_ssto_hap7	1248425	1248426	rs9260426	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p22.1		rs9260426-?	NR	6E-27		0.0229231	[0.019-0.027] unit increase	Affymetrix [20259828] (imputed)	N
594	chr6_ssto_hap7	1248425	1248426	rs9260426	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	6p22.1	HLA-A	rs9260426-A	0.498682	2E-8	(women)	0.0236393	[0.015-0.033] unit increase	NR [17166351] (imputed)	N
594	chr6_ssto_hap7	1248425	1248426	rs9260426	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	6p22.1	HLA-A	rs9260426-A	0.498488	3E-11		0.020854	[0.014-0.027] unit increase	NR [17166351] (imputed)	N
594	chr6_ssto_hap7	1249108	1249109	rs7747253	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	6p22.1	HLA-A	rs7747253-C	0.499099	1E-33		0.022146	[0.019-0.026] unit increase	NR [13737936] (imputed)	N
594	chr6_ssto_hap7	1249660	1249661	rs9260489	23417110	Tin A	2013-02-16	Hum Genet	Genome-wide association study identified the human leukocyte antigen region as a novel locus for plasma beta-2 microglobulin.	Beta-2 microglubulin plasma levels	6,728 European ancestry individuals		6p22.1	HLA-A	rs9260489-G	0.58	2E-22		0.04	[0.032-0.048] unit decrease	Affymetrix [2500000] (imputed)	N
594	chr6_ssto_hap7	1249660	1249661	rs9260489	22190364	Patsopoulos NA	2011-12-01	Ann Neurol	Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.	Multiple sclerosis	5,545 European ancestry cases, 12,153 European ancestry controls	NA	6p22.1	HLA-B	rs9260489-T	0.45	1E-11		1.21	[NR]	Affymetrix, Illumina [2529394]	N
594	chr6_ssto_hap7	1249750	1249751	rs9260492	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p22.1		rs9260492-T	0.5	3E-19				Affymetrix [10369434] (imputed)	N
594	chr6_ssto_hap7	1250040	1250041	rs9260500	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p22.1		rs9260500-T	0.5	2E-56				Affymetrix [10369434] (imputed)	N
594	chr6_ssto_hap7	1250369	1250370	rs28749167	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	286 European ancestry cases, 2,652 European ancestry controls, 76 Han Chinese ancestry cases, 889 Han Chinese ancestry controls, 46 South Asian ancestry cases, 501 South Asian ancestry controls, 683 Turkish ancestry cases, 1,721 Turkish ancestry controls	NA	6p22.1	HLA-G	rs28749167-?	NR	2E-9	(conditional on rs2844678, rs12524487, rs17193507 and rs12526858)	1.43	NR	Illumina [up to 4495750] (imputed)	N
594	chr6_ssto_hap7	1250508	1250509	rs9260526	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (underestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	6p22.1	NR	rs9260526-?	NR	5E-9		5.864	NR z score increase	Illumina [at least 830937] (imputed)	N
594	chr6_ssto_hap7	1250795	1250796	rs137886986	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6p22.1	HLA-W	rs137886986-A	0.09576	8E-24		0.039658234	[0.032-0.047] unit increase	Affymetrix [93095623] (imputed)	N
594	chr6_ssto_hap7	1252001	1252002	rs28780071	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	Intrinsic epigenetic age acceleration	34,461 European ancestry individuals	NA	6p22.1	NR	rs28780071-T	0.3313	4E-9		0.2035	[0.14-0.27] unit increase	Affymetrix, Illumina [7567980] (imputed)	N
594	chr6_ssto_hap7	1252074	1252075	rs16896742	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NPTX1	5,365 Icelandic ancestry individuals	NA	6p22.1		rs16896742-G	0.4238	6E-28		0.206363	[0.17-0.24] unit decrease	Illumina [7506463] (imputed)	N
594	chr6_ssto_hap7	1252074	1252075	rs16896742	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	6p22.1	HLA-A	rs16896742-G	0.38	3E-10		0.04	[0.028-0.052] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
594	chr6_ssto_hap7	1252088	1252089	rs9260603	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p22.1	HLA-W	rs9260603-T	NR	2E-8		0.0159518	[0.01-0.021] unit increase	Affymetrix [319769] (imputed)	N
594	chr6_ssto_hap7	1252088	1252089	rs9260603	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p22.1	HLA-W	rs9260603-T	NR	4E-8		0.0156092	[0.01-0.021] unit increase	Affymetrix [319769] (imputed)	N
594	chr6_ssto_hap7	1252422	1252423	rs9260619	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p22.1	NR	rs9260619-?	NR	3E-11		0.2395	[0.17-0.31] unit increase	Illumina [at least 560000] (imputed)	N
594	chr6_ssto_hap7	1252427	1252428	rs9260620	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	6p22.1	HLA-W	rs9260620-G	0.3359	2E-74		0.06971236	[0.062-0.077] unit decrease	Affymetrix [~ 2500000] (imputed)	N
594	chr6_ssto_hap7	1252427	1252428	rs9260620	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	6p22.1	HLA-W	rs9260620-G	0.3358	2E-44		0.05337227	[0.046-0.061] unit decrease	Affymetrix [~ 2500000] (imputed)	N
594	chr6_ssto_hap7	1252427	1252428	rs9260620	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	6p22.1	HLA-W	rs9260620-G	0.3358	4E-40		0.05070884	[0.043-0.058] unit decrease	Affymetrix [~ 2500000] (imputed)	N
594	chr6_ssto_hap7	1252427	1252428	rs9260620	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	6p22.1	HLA-W	rs9260620-G	0.3358	2E-39		0.05008696	[0.043-0.058] unit decrease	Affymetrix [~ 2500000] (imputed)	N
594	chr6_ssto_hap7	1252427	1252428	rs9260620	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	6p22.1	HLA-W	rs9260620-G	0.3358	6E-51		0.05759035	[0.05-0.065] unit decrease	Affymetrix [~ 2500000] (imputed)	N
594	chr6_ssto_hap7	1252427	1252428	rs9260620	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	6p22.1	HLA-W	rs9260620-G	0.3357	4E-53		0.05836372	[0.051-0.066] unit decrease	Affymetrix [~ 2500000] (imputed)	N
594	chr6_ssto_hap7	1252427	1252428	rs9260620	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	6p22.1	HLA-W	rs9260620-G	0.3358	7E-45		0.05377813	[0.046-0.061] unit decrease	Affymetrix [~ 2500000] (imputed)	N
594	chr6_ssto_hap7	1252584	1252585	rs7768235	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p22.1	HLA-W	rs7768235-C	0.514186	1E-16		0.022017317	[0.017-0.027] unit increase	Affymetrix [93095623] (imputed)	N
594	chr6_ssto_hap7	1252584	1252585	rs7768235	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	6p22.1	HLA-W	rs7768235-C	0.514229	5E-14		0.02060967	[0.015-0.026] unit increase	Affymetrix [93095623] (imputed)	N
594	chr6_ssto_hap7	1252584	1252585	rs7768235	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p22.1		rs7768235-?	NR	7E-25		0.0219262	[0.018-0.026] unit increase	Affymetrix [20259828] (imputed)	N
594	chr6_ssto_hap7	1252688	1252689	rs2904758	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	6p22.1	HLA-W	rs2904758-A	0.7187	6E-17		0.03315845	[0.025-0.041] unit decrease	Affymetrix [~ 2500000] (imputed)	N
594	chr6_ssto_hap7	1252760	1252761	rs9260639	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	6p22.1	HLA-W	rs9260639-T	0.1389	2E-14		0.03938988	[0.029-0.05] unit increase	Affymetrix [~ 2500000] (imputed)	N
594	chr6_ssto_hap7	1252840	1252841	rs2571389	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p22.1		rs2571389-T	0.5	1E-30				Affymetrix [10369434] (imputed)	N
594	chr6_ssto_hap7	1252891	1252892	rs2571390	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8 on Effector Memory CD8+ T cell	2,912 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p22.1		rs2571390-C	0.82253	6E-22		0.3643	[0.29-0.44] unit increase	Illumina [17945888] (imputed)	N
594	chr6_ssto_hap7	1253198	1253199	rs2571391	22075330	Granada M	2011-11-08	J Allergy Clin Immunol	A genome-wide association study of plasma total IgE concentrations in the Framingham Heart Study.	IgE levels	6,819 European ancestry individuals	7,809 European ancestry indivduals	6p22.1	HLA-A	rs2571391-C	NR	1E-15		0.06	[NR] unit increase	Affymetrix [2540223] (imputed)	N
594	chr6_ssto_hap7	1253580	1253581	rs2571392	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	6p22.1	HLA-W	rs2571392-A	0.314446	4E-11		0.023026897	[0.016-0.03] unit increase	Affymetrix [93095623] (imputed)	N
594	chr6_ssto_hap7	1253654	1253655	rs73725598	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	6p22.1	HLA-W	rs73725598-C	0.0934	2E-9		0.03755279	[0.025-0.05] unit decrease	Affymetrix [~ 2500000] (imputed)	N
594	chr6_ssto_hap7	1253727	1253728	rs2571394	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TAPBPL	5,368 Icelandic ancestry individuals	NA	6p22.1		rs2571394-G	0.3722	1E-15		0.160938	[0.12-0.2] unit decrease	Illumina [7506463] (imputed)	N
594	chr6_ssto_hap7	1253778	1253779	rs17179851	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Gynecologic disease	7,975 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs17179851-?		7E-8		1.11	[1.07-1.15]	Illumina [7645193] (imputed)	N
594	chr6_ssto_hap7	1253778	1253779	rs17179851	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Gynecologic disease	7,315 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs17179851-?		7E-7				Illumina [7645193] (imputed)	N
594	chr6_ssto_hap7	1253880	1253881	rs1808199	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	6p22.1	HLA-W	rs1808199-T	0.092214	4E-22		0.03959165	[0.032-0.048] unit decrease	Affymetrix [93095623] (imputed)	N
594	chr6_ssto_hap7	1254441	1254442	rs114193679	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mumps	31,227 European ancestry cases, 54,153 European ancestry controls	NA	6p22.1	HLA-A	rs114193679-G	0.99	2E-17		1.72	[1.62-1.84]	Illumina [at least 560000] (imputed)	N
594	chr6_ssto_hap7	1254607	1254608	rs17186335	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p22.1	NR	rs17186335-?	NR	3E-8		0.0898	[0.058-0.122] unit decrease	Illumina [at least 560000] (imputed)	N
594	chr6_ssto_hap7	1255206	1255207	rs62392216	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	57 Italian ancestry cases, 931 Italian ancestry controls	NA	6p22.1	HLA-B	rs62392216-?	NR	1E-11				Illumina [4425173] (imputed)	N
594	chr6_ssto_hap7	1255206	1255207	rs62392216	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	229 European ancestry cases, 1,088 European ancestry controls	NA	6p22.1	HLA-G	rs62392216-?	NR	3E-11	(conditional on rs12524487)			Illumina [4388215] (imputed)	N
594	chr6_ssto_hap7	1255706	1255707	rs9260679	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	6p22.1	NR	rs9260679-?	NR	9E-90		20.092	NR z score increase	Illumina [at least 830937] (imputed)	N
594	chr6_ssto_hap7	1256424	1256425	rs2735085	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	HLA-W	rs2735085-A	NR	5E-8		0.0198962	[0.013-0.027] unit decrease	Affymetrix [321016] (imputed)	N
594	chr6_ssto_hap7	1256611	1256612	rs114577328	28043905	Nicoletti P	2016-12-30	Gastroenterology	Association of Liver Injury From Specific Drugs, or Groups of Drugs, With Polymorphisms in HLA and Other Genes in a Genome-Wide Association Study.	Drug-induced liver injury	862 European ancestry cases and 10,588 European ancestry controls	NA	6p22.1	MHC	rs114577328-?	0.01	2E-8		2.7	1.9-3.8	Illumina [505740] (imputed)	N
594	chr6_ssto_hap7	1257051	1257052	rs2571400	34642315	Ferreiro-Iglesias A	2021-10-12	Nat Commun	Germline determinants of humoral immune response to HPV-16 protect against oropharyngeal cancer.	Human papilloma virus 16 positive oropharyngeal cancer	1,078 European ancestry cases, 5,256 European ancestry controls	NA	6p22.1		rs2571400-G	NR	3E-6		1.2905		Illumina [7574753] (imputed)	N
594	chr6_ssto_hap7	1257051	1257052	rs2571400	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	HLA-W	rs2571400-C	NR	5E-8		5.453	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
594	chr6_ssto_hap7	1258403	1258404	rs2517690	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p22.1	NR	rs2517690-?	NR	7E-9				Affymetrix [~ 8270000] (imputed)	N
594	chr6_ssto_hap7	1260265	1260266	rs56262516	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8 on CD28- CD8+ T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p22.1		rs56262516-A	0.27456	1E-11		0.23	[0.16-0.3] unit increase	Illumina [17954496] (imputed)	N
594	chr6_ssto_hap7	1260265	1260266	rs56262516	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8 on CD28+ CD45RA- CD8+ T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p22.1		rs56262516-A	0.27456	7E-13		0.2531	[0.18-0.32] unit increase	Illumina [17954496] (imputed)	N
594	chr6_ssto_hap7	1260671	1260672	rs192543598	31066027	Nicoletti P	2019-05-07	Clin Pharmacol Ther	Shared genetic risk factors across carbamazepine-induced hypersensitivity reactions.	Carbamazepine-induced serious cutaneous adverse reaction	43 European ancestry cases, 10,701 European ancestry controls	NA	6p22.1	NR	rs192543598-G	0.01	2E-12		18.11	[8.03-40.88]	Illumina [5271349] (imputed)	N
594	chr6_ssto_hap7	1261223	1261224	rs2517683	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	6p22.1	HLA-W	rs2517683-C	NR	5E-10		0.0183528	[0.013-0.024] unit decrease	Affymetrix [321788] (imputed)	N
594	chr6_ssto_hap7	1261610	1261611	rs2523933	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	HLA-W	rs2523933-T	NR	2E-9		6.01	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
594	chr6_ssto_hap7	1262546	1262547	rs2517678	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	6p22.1	intergenic	rs2517678-T	0.3811	2E-9		0.02249725	[0.015-0.03] unit increase	Affymetrix [~ 2500000] (imputed)	N
594	chr6_ssto_hap7	1262582	1262583	rs6457109	33574277	Kawai Y	2021-02-11	NPJ Genom Med	Mapping of susceptible variants for cold medicine-related Stevens-Johnson syndrome by whole-genome resequencing.	Cold medicine-related Stevens-Johnson syndrome/toxic epidermal necrolysis (SJS/TEN) with severe ocular complications	133 Japanese ancestry cases, 418 Japanese ancestry controls	NA	6p22.1		rs6457109-C	0.2519	3E-16		4.516		Illumina [7608150]	N
594	chr6_ssto_hap7	1263341	1263342	rs6914699	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	MICD	rs6914699-T	NR	3E-8		5.569	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
594	chr6_ssto_hap7	1263483	1263484	rs6935053	23511034	Yang SK	2013-04-01	Inflamm Bowel Dis	Genome-wide association study of ulcerative colitis in Koreans suggests extensive overlapping of genetic susceptibility with Caucasians.	Ulcerative colitis	388 Korean ancestry cases, 739 Korean ancestry controls	417 Korean ancestry cases, 732 Korean ancestry controls	6p22.1	HCG9	rs6935053-?	NR	2E-6	(Conditioned on rs9271366)			Illumina [581060]	N
594	chr6_ssto_hap7	1264569	1264570	rs3893464	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p22.1		rs3893464-G	0.514	7E-43				Affymetrix [10369434] (imputed)	N
594	chr6_ssto_hap7	1264569	1264570	rs3893464	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	6p22.1	MICD	rs3893464-A	0.4884	7E-54		0.05503962	[0.048-0.062] unit decrease	Affymetrix [~ 2500000] (imputed)	N
594	chr6_ssto_hap7	1264569	1264570	rs3893464	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	6p22.1	MICD	rs3893464-A	0.4883	8E-55		0.05548136	[0.049-0.062] unit decrease	Affymetrix [~ 2500000] (imputed)	N
594	chr6_ssto_hap7	1264569	1264570	rs3893464	21900946	Nakabayashi K	2011-09-08	J Hum Genet	Identification of independent risk loci for Graves' disease within the MHC in the Japanese population.	Graves' disease	1,119 Japanese ancestry cases, 2,718 Japanese ancestry controls	432 Japanese ancestry cases, 1,157 Japanese ancestry controls	6p22.1	MHC	rs3893464-G	0.36	2E-20		1.53	[1.39-1.67]	Perlegen [268068]	N
594	chr6_ssto_hap7	1264724	1264725	rs3893463	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	MICD	rs3893463-T	NR	2E-8		5.65	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
594	chr6_ssto_hap7	1265040	1265041	rs56402621	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	6p22.1	HLA-A, ZNRD1-AS1	rs56402621-T	0.0181	2E-7		0.0330166	[0.021-0.045] unit increase	Affymetrix [11880941] (imputed)	N
594	chr6_ssto_hap7	1265951	1265952	rs9260765	33143745	Andlauer TFM	2020-11-04	BMC Med	Treatment- and population-specific genetic risk factors for anti-drug antibodies against interferon-beta: a GWAS.	Binding antibody response to interferon beta therapy in multiple sclerosis (antibody levels; all treatment preparations)	up to 2,000 German and Swedish ancestry individuals	up to 757 German and Swedish ancestry individuals	6p22.1		rs9260765-C	0.45	5E-11		0.17372645	[0.12-0.23] unit increase	Illumina [8550834] (imputed)	N
594	chr6_ssto_hap7	1266651	1266655	rs60131261	27723757	Jin Y	2016-11-01	Nat Genet	Genome-wide association studies of autoimmune vitiligo identify 23 new risk loci and highlight key pathways and regulatory variants.	Vitiligo	2,853 European ancestry cases and 37,405 European ancestry controls	1,827 European ancestry cases and 2,181 European ancestry controls	6p22.1	HLA-A	rs60131261-?	NR	2E-66		1.535	NR	Illumina [8966411] (imputed)	N
594	chr6_ssto_hap7	1266870	1266871	rs1061539	30566020	Fukaya E	2018-12-01	Circulation	Clinical and Genetic Determinants of Varicose Veins.	Varicose veins	9,577 British ancestry cases, 327,959 British ancestry controls	NA	6p22.1	NR	rs1061539-C	0.83	2E-9		0.113	[0.076-0.15] unit decrease	Affymetrix [10972371] (imputed)	N
594	chr6_ssto_hap7	1267099	1267100	rs2523972	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p22.1	MICD	rs2523972-C	NR	1E-11		0.0191491	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
594	chr6_ssto_hap7	1267099	1267100	rs2523972	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p22.1	MICD	rs2523972-C	NR	1E-10		0.0182302	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
594	chr6_ssto_hap7	1267099	1267100	rs2523972	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	MICD	rs2523972-C	NR	1E-12		0.0200168	[0.014-0.026] unit decrease	Affymetrix [321016] (imputed)	N
594	chr6_ssto_hap7	1267239	1267240	rs1061535	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	6p22.1	NR	rs1061535-?	NR	1E-6		0.0535	[0.032-0.075] unit decrease	Illumina [at least 560000] (imputed)	N
594	chr6_ssto_hap7	1267292	1267293	rs2517671	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	6p22.1	HCG9	rs2517671-G	0.419267	3E-22		0.023432834	[0.019-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
594	chr6_ssto_hap7	1268463	1268464	rs2523968	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p22.1	NR	rs2523968-A	0.429	4E-12	(conditional)	1.132	[1.1-1.17]	Illumina [11270530] (imputed)	N
594	chr6_ssto_hap7	1268895	1268896	rs2523961	29784950	Sawai H	2018-05-21	Sci Rep	Genome-wide association study identified new susceptible genetic variants in HLA class I region for hepatitis B virus-related hepatocellular carcinoma.	Hepatocellular carcinoma in hepatitis B infection	473 Japanese ancestry chronic hepatitis and hepatocellular carcinoma cases, 516 Japanese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma	153 Japanese ancestry chronic hepatitis and hepatocellular carcinoma cases, 614 Japanese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma, 94 Chinese ancestry chronic hepatitis and hepatocellular carcinoma cases, 187 Chinese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma, 185 Thai ancestry chronic hepatitis and hepatocellular carcinoma cases, 198 Thai ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma	6p22.1	HLA	rs2523961-?	NR	6E-11		1.91	[1.56-2.37] Japanese	Affymetrix [447830]	N
594	chr6_ssto_hap7	1268895	1268896	rs2523961	29784950	Sawai H	2018-05-21	Sci Rep	Genome-wide association study identified new susceptible genetic variants in HLA class I region for hepatitis B virus-related hepatocellular carcinoma.	Hepatocellular carcinoma in hepatitis B infection	473 Japanese ancestry chronic hepatitis and hepatocellular carcinoma cases, 516 Japanese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma	153 Japanese ancestry chronic hepatitis and hepatocellular carcinoma cases, 614 Japanese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma, 94 Chinese ancestry chronic hepatitis and hepatocellular carcinoma cases, 187 Chinese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma, 185 Thai ancestry chronic hepatitis and hepatocellular carcinoma cases, 198 Thai ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma	6p22.1	HLA	rs2523961-?	NR	6E-10	(Japanese)	1.91	[1.56-2.37]	Affymetrix [447830]	N
594	chr6_ssto_hap7	1270746	1270747	rs9295825	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p22.1	NR	rs9295825-?	NR	3E-18		0.1197	[0.092-0.147] unit increase	Illumina [at least 560000] (imputed)	N
594	chr6_ssto_hap7	1271128	1271129	rs444252	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Strep throat	52,487 European ancestry cases, 22,017 European ancestry controls	NA	6p22.1	NR	rs444252-?	NR	1E-6		0.0267	[0.016-0.037] unit increase	Illumina [at least 560000] (imputed)	N
594	chr6_ssto_hap7	1271258	1271259	rs2523946	32912934	Li M	2020-09-10	J Am Soc Nephrol	Genome-Wide Meta-Analysis Identifies Three Novel Susceptibility Loci and Reveals Ethnic Heterogeneity of Genetic Susceptibility for IgA Nephropathy.	IgA nephropathy	2,628 Chinese ancestry cases, 11,563 Chinese ancestry controls	6,879 Han Chinese ancestry cases, 9,019 Han Chinese ancestry controls, 1,039 Italian ancestry cases, 1,289 Italian ancestry controls	6p22.1	HLA-A	rs2523946-C	0.5077594888869671	2E-8	(East Asian)	1.2170416	[1.13667796674979-1.3030869883916]	NR [3611808] (imputed)	N
594	chr6_ssto_hap7	1271258	1271259	rs2523946	26028593	Li M	2015-06-01	Nat Commun	Identification of new susceptibility loci for IgA nephropathy in Han Chinese.	IgA nephropathy	1,434 Han Chinese ancestry cases, 10,661 Han Chinese ancestry controls	6,879 Han Chinese ancestry cases, 9,019 Han Chinese ancestry controls	6p22.1	NR	rs2523946-C	0.511	5E-11		1.317	[1.217-1.426]	Illumina [3792949] (imputed)	N
594	chr6_ssto_hap7	1271258	1271259	rs2523946	22197929	Yu XQ	2011-12-25	Nat Genet	A genome-wide association study in Han Chinese identifies multiple susceptibility loci for IgA nephropathy.	IgA nephropathy	1,434 Han Chinese ancestry cases, 4,270 Han Chinese ancestry controls	2,703 Han Chinese ancestry cases, 3,464 Han Chinese ancestry controls	6p22.1	HLA-A	rs2523946-C	0.50	2E-11		1.21	[1.15-1.28]	Illumina [444882]	N
594	chr6_ssto_hap7	1271398	1271399	rs3823355	20410501	Jin Y	2010-04-21	N Engl J Med	Variant of TYR and autoimmunity susceptibility loci in generalized vitiligo.	Vitiligo	1,392 European ancestry cases, 2,629 European ancestry controls	647 European ancestry cases, 1,056 European ancestry controls, 183 European ancestry trios, 1,383 European ancestry individuals from 332 families	6p22.1	HLA-A, HCG9	rs3823355-T	0.29	9E-23		1.5	[1.39-1.63]	Illumina [520460]	N
594	chr6_ssto_hap7	1271701	1271702	rs35835721	33574277	Kawai Y	2021-02-11	NPJ Genom Med	Mapping of susceptible variants for cold medicine-related Stevens-Johnson syndrome by whole-genome resequencing.	Cold medicine-related Stevens-Johnson syndrome/toxic epidermal necrolysis (SJS/TEN) with severe ocular complications	133 Japanese ancestry cases, 418 Japanese ancestry controls	NA	6p22.1		rs35835721-G	0.4624	8E-15		3.091		Illumina [7608150]	N
594	chr6_ssto_hap7	1271989	1271990	rs1960063	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	HCG9	rs1960063-A	NR	4E-10		0.0213735	[0.015-0.028] unit decrease	Affymetrix [323858] (imputed)	N
594	chr6_ssto_hap7	1271989	1271990	rs1960063	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	HCG9	rs1960063-A	NR	4E-10		0.0213569	[0.015-0.028] unit decrease	Affymetrix [127266] (imputed)	N
594	chr6_ssto_hap7	1272390	1272391	rs6904029	24939585	Fransen E	2014-06-18	Eur J Hum Genet	Genome-wide association analysis demonstrates the highly polygenic character of age-related hearing impairment.	Age-related hearing impairment	1,489 European ancestry individuals	NA	6p22.1	HLA-A29.1, HCG9	rs6904029-?		3E-6	(PC3)	0.0464	[NR] unit decrease	Illumina [4167292] (imputed)	N
594	chr6_ssto_hap7	1272974	1272975	rs2394250	23749187	Cortes A	2013-07-01	Nat Genet	Identification of multiple risk variants for ankylosing spondylitis through high-density genotyping of immune-related loci.	Ankylosing spondylitis	9,069 European ancestry cases, 1,550 East Asian ancestry cases, 13,578 European ancestry controls, 1,567 East Asian ancestry controls	NA	6p22.1	HLA-A*0201	rs2394250-?	0.421	8E-51	(EA)	1.541		Illumina [128935]	N
594	chr6_ssto_hap7	1273006	1273007	rs2394251	33269293	Kannambath S	2020-10-16	Open Forum Infect Dis	Genome-Wide Association Study Identifies Novel Colony Stimulating Factor 1 Locus Conferring Susceptibility to Cryptococcosis in Human Immunodeficiency Virus-Infected South Africans.	Cryptococcosis in HIV infection	319 South African ancestry cases, 399 South African ancestry controls	NA	6p22.1	HLA-H	rs2394251-?	NR	9E-6		0.7439	[NR]	Illumina [2686126] (imputed)	N
594	chr6_ssto_hap7	1273033	1273034	rs3823363	34642315	Ferreiro-Iglesias A	2021-10-12	Nat Commun	Germline determinants of humoral immune response to HPV-16 protect against oropharyngeal cancer.	Oropharynx cancer and human papilloma virus 16 negative oropharyngeal cancer	2,359 European ancestry cases, 565 European ancestry controls	NA	6p22.1		rs3823363-A	NR	1E-7		0.8222		Illumina [up to 7574753] (imputed)	N
594	chr6_ssto_hap7	1273779	1273780	rs3823379	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	6p22.1	HLA-A	rs3823379-T	0.487762	1E-16		0.0171763	[0.013-0.021] unit decrease	Affymetrix [NR] (imputed)	N
594	chr6_ssto_hap7	1273864	1273865	rs2735075	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p22.1		rs2735075-T	0.592	2E-18				Affymetrix [10369434] (imputed)	N
594	chr6_ssto_hap7	1275270	1275271	rs3132685	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small HDL	115,082 European ancestry individuals	NA	6p22.1		rs3132685-G	0.865719	1E-10		0.0393348	[0.027-0.051] unit increase	NR [11722792] (imputed)	N
594	chr6_ssto_hap7	1275270	1275271	rs3132685	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	6p22.1		rs3132685-G	0.865719	6E-9		0.0355211	[0.024-0.047] unit decrease	NR [11722792] (imputed)	N
594	chr6_ssto_hap7	1275270	1275271	rs3132685	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small HDL	115,082 European ancestry individuals	NA	6p22.1		rs3132685-G	0.865719	5E-12		0.0418299	[0.03-0.054] unit increase	NR [11722792] (imputed)	N
594	chr6_ssto_hap7	1275270	1275271	rs3132685	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-3 fatty acid levels	115,006 European ancestry individuals	NA	6p22.1		rs3132685-G	0.865725	2E-11		0.0394662	[0.028-0.051] unit increase	NR [11722792] (imputed)	N
594	chr6_ssto_hap7	1275270	1275271	rs3132685	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Monounsaturated fatty acid levels	115,006 European ancestry individuals	NA	6p22.1		rs3132685-G	0.865725	2E-8		0.033954	[0.022-0.046] unit increase	NR [11722792] (imputed)	N
594	chr6_ssto_hap7	1275270	1275271	rs3132685	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small HDL	115,082 European ancestry individuals	NA	6p22.1		rs3132685-G	0.865719	5E-10		0.0372621	[0.026-0.049] unit increase	NR [11722792] (imputed)	N
594	chr6_ssto_hap7	1275270	1275271	rs3132685	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p22.1	NR	rs3132685-A	0.1302	2E-13		0.0131	[0.0096-0.0166] unit decrease	NR [7666894] (imputed)	N
594	chr6_ssto_hap7	1284425	1284426	rs17180647	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p22.1	NR	rs17180647-?	NR	4E-7		0.3884	[0.24-0.54] unit decrease	Illumina [at least 560000] (imputed)	N
594	chr6_ssto_hap7	1289326	1289327	rs7749944	30850646	Tziotzios C	2019-03-08	Nat Commun	Genome-wide association study in frontal fibrosing alopecia identifies four susceptibility loci including HLA-B*07:02.	Frontal fibrosing alopecia	1,016 European ancestry cases, 4,145 European ancestry controls		6p22.1	NR	rs7749944-?	0.006	8E-42		10.06	[7.2-14.1]	Illumina [~ 8000000] (imputed)	N
594	chr6_ssto_hap7	1294155	1294156	rs12110437	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	76 Han Chinese ancestry cases, 889 Han Chinese ancestry controls	NA	6p22.1	HLA-G	rs12110437-?	NR	2E-10				Illumina [3403929] (imputed)	N
594	chr6_ssto_hap7	1299915	1299916	rs7758512	20041166	Fellay J	2009-12-24	PLoS Genet	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	6p22.1	HLA-A, ZNRD1, RNF39	rs7758512-?	NR	2E-8	(progression)			Illumina [NR]	N
594	chr6_ssto_hap7	1300287	1300288	rs3094146	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total concentration of lipoprotein particles	115,082 European ancestry individuals	NA	6p22.1		rs3094146-G	0.871463	2E-9		0.0352048	[0.024-0.047] unit increase	NR [11722792] (imputed)	N
594	chr6_ssto_hap7	1300287	1300288	rs3094146	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Polyunsaturated fatty acid levels	115,006 European ancestry individuals	NA	6p22.1		rs3094146-G	0.871472	2E-13		0.0443955	[0.033-0.056] unit increase	NR [11722792] (imputed)	N
594	chr6_ssto_hap7	1300287	1300288	rs3094146	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6p22.1		rs3094146-G	0.871463	1E-8		0.0355971	[0.023-0.048] unit decrease	NR [11722792] (imputed)	N
594	chr6_ssto_hap7	1300287	1300288	rs3094146	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphoglycerides levels	115,006 European ancestry individuals	NA	6p22.1		rs3094146-G	0.871472	3E-10		0.0370038	[0.026-0.049] unit increase	NR [11722792] (imputed)	N
594	chr6_ssto_hap7	1300287	1300288	rs3094146	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphatidylcholine levels	115,006 European ancestry individuals	NA	6p22.1		rs3094146-G	0.871472	3E-9		0.0343894	[0.023-0.046] unit increase	NR [11722792] (imputed)	N
594	chr6_ssto_hap7	1300287	1300288	rs3094146	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	6p22.1		rs3094146-G	0.871463	5E-10		0.0351913	[0.024-0.046] unit increase	NR [11722792] (imputed)	N
594	chr6_ssto_hap7	1300287	1300288	rs3094146	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium HDL particles	115,082 European ancestry individuals	NA	6p22.1		rs3094146-G	0.871463	2E-11		0.0384568	[0.027-0.05] unit increase	NR [11722792] (imputed)	N
594	chr6_ssto_hap7	1300287	1300288	rs3094146	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of HDL particles	115,082 European ancestry individuals	NA	6p22.1		rs3094146-G	0.871463	4E-10		0.0365016	[0.025-0.048] unit increase	NR [11722792] (imputed)	N
594	chr6_ssto_hap7	1300287	1300288	rs3094146	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	6p22.1		rs3094146-G	0.871463	2E-9		0.034562	[0.023-0.046] unit increase	NR [11722792] (imputed)	N
594	chr6_ssto_hap7	1300287	1300288	rs3094146	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein A1 levels	115,082 European ancestry individuals	NA	6p22.1		rs3094146-G	0.871463	9E-11		0.036855	[0.026-0.048] unit increase	NR [11722792] (imputed)	N
594	chr6_ssto_hap7	1300287	1300288	rs3094146	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p22.1	ZNRD1-AS1	rs3094146-C	NR	4E-10		0.0289428	[0.02-0.038] unit decrease	Affymetrix [323858] (imputed)	N
594	chr6_ssto_hap7	1300287	1300288	rs3094146	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Help-seeking from a GP (without major depressive disorder symptoms)	8,632 British ancestry cases, 49,493 British ancestry controls	NA	6p22.1	NR	rs3094146-G	0.87	5E-8		1.1494253	[1.10-1.20]	NR [5276842] (imputed)	N
594	chr6_ssto_hap7	1300287	1300288	rs3094146	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p22.1	NR	rs3094146-C	0.1057	7E-7	(EA)	0.0543	[0.033-0.076] unit decrease	Illumina [~ 11800000] (imputed)	N
594	chr6_ssto_hap7	1303252	1303253	rs4313034	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p22.1		rs4313034-T	0.825373	2E-18		1.048594	[1.04-1.06]	Affymetrix, Illumina [9851866] (imputed)	N
594	chr6_ssto_hap7	1303252	1303253	rs4313034	21900946	Nakabayashi K	2011-09-08	J Hum Genet	Identification of independent risk loci for Graves' disease within the MHC in the Japanese population.	Graves' disease	1,119 Japanese ancestry cases, 2,718 Japanese ancestry controls	432 Japanese ancestry cases, 1,157 Japanese ancestry controls	6p22.1	MHC	rs4313034-T	0.83	2E-15		1.67	[1.47-1.90]	Perlegen [268068]	N
594	chr6_ssto_hap7	1307196	1307197	rs886997	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Asthma	13,015 East Asian ancestry cases, 162,933 East Asian ancestry controls	NA	6p22.1		rs886997-T	0.201391947	2E-10		0.10704092	[0.074-0.14] unit increase	Illumina [13429513] (imputed)	N
594	chr6_ssto_hap7	1307679	1307680	rs4713281	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p22.1	HLA-J, NCRNA00171	rs4713281-A	0.28	1E-6	(EA)	1.97	[1.49-2.59]	Illumina [up to 547389]	N
595	chr6_ssto_hap7	1315668	1315669	rs3115631	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	ZNRD1-AS1	rs3115631-A	NR	4E-17		0.0400652	[0.031-0.049] unit decrease	Affymetrix [323858] (imputed)	N
595	chr6_ssto_hap7	1315668	1315669	rs3115631	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	ZNRD1-AS1	rs3115631-A	NR	2E-16		0.0390685	[0.03-0.048] unit decrease	Affymetrix [127266] (imputed)	N
595	chr6_ssto_hap7	1315668	1315669	rs3115631	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Major depressive disorder (lifetime)	16,301 British ancestry cases, 50,870 British ancestry controls	NA	6p22.1	NR	rs3115631-?	NR	4E-7		1.1037527	[1.06-1.15]	NR [5276842] (imputed)	N
595	chr6_ssto_hap7	1315668	1315669	rs3115631	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Help-seeking from a GP	113,262 British ancestry cases, 219,360 British ancestry controls	NA	6p22.1	NR	rs3115631-T	0.874	3E-13		1.059322	[1.04-1.08]	NR [5276842] (imputed)	N
595	chr6_ssto_hap7	1332119	1332120	rs62388754	30850646	Tziotzios C	2019-03-08	Nat Commun	Genome-wide association study in frontal fibrosing alopecia identifies four susceptibility loci including HLA-B*07:02.	Frontal fibrosing alopecia	1,016 European ancestry cases, 4,145 European ancestry controls		6p22.1	NR	rs62388754-?	0.058	5E-32		2.76	[2.33-3.27]	Illumina [~ 8000000] (imputed)	N
595	chr6_ssto_hap7	1336169	1336170	rs4711207	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Allergic rhinitis	4,387 European ancestry cases, 471,273 European ancestry controls, 7,897 East Asian ancestry cases, 153,666 East Asian ancestry controls	NA	6p22.1		rs4711207-A	NR	2E-8		0.087	[0.057-0.117] unit decrease	Affymetrix, Illumina [25843170] (imputed)	N
595	chr6_ssto_hap7	1336169	1336170	rs4711207	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p22.1	NR	rs4711207-A	0.366	3E-19	(IFNAR2_of_CD20p)			Illumina [5084123] (imputed)	N
595	chr6_ssto_hap7	1339168	1339169	rs3910312	35232999	Garcia-Etxebarria K	2022-03-01	Sci Rep	Local genetic variation of inflammatory bowel disease in Basque population and its effect in risk prediction.	Ulcerative colitis	208 European ancestry cases, 935 European ancestry controls	NA	6p22.1		rs3910312-C	0.255	7E-7		1.8		Illumina [5409651] (imputed)	N
595	chr6_ssto_hap7	1344311	1344312	rs9261224	31217265	Sliz E	2019-06-19	J Med Genet	Genome-wide association study identifies seven novel loci associating with circulating cytokines and cell adhesion molecules in Finns.	Interleukin-1-beta levels	13,577 Finnish ancestry individuals	NA	6p22.1	HLA	rs9261224-T	0.035	1E-9		0.261	unit increase	Illumina [NR] (imputed)	N
595	chr6_ssto_hap7	1347504	1347505	rs6917603	31217265	Sliz E	2019-06-19	J Med Genet	Genome-wide association study identifies seven novel loci associating with circulating cytokines and cell adhesion molecules in Finns.	Interleukin-1-beta levels	13,577 Finnish ancestry individuals	NA	6p22.1	HLA	rs6917603-C	0.251	2E-12		0.163	unit decrease	Illumina [NR] (imputed)	N
595	chr6_ssto_hap7	1347504	1347505	rs6917603	22286219	Kettunen J	2012-01-29	Nat Genet	Genome-wide association study identifies multiple loci influencing human serum metabolite levels.	Lipid metabolism phenotypes	8,330 European ancestry individuals	NA	6p22.1	PPP1R11	rs6917603-?	NR	3E-29	(XXL-VLDL-P)	0.24	[0.2-0.28] unit decrease	Illumina [~ 7700000] (imputed)	N
595	chr6_ssto_hap7	1353521	1353522	rs9261259	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	ZNRD1-AS1	rs9261259-C	NR	2E-16		0.0319539	[0.024-0.04] unit decrease	Affymetrix [127266] (imputed)	N
595	chr6_ssto_hap7	1355945	1355946	rs259919	32276964	Shete S	2020-04-10	Cancer Res	A genome-wide association study identifies two novel susceptible regions for squamous cell carcinoma of the head and neck.	Head and neck squamous cell carcinoma	2,171 European ancestry cases, 4,493 European ancestry controls	5,205 European ancestry cases, 3,232 European ancestry controls	6p22.1	ZNRD1-AS1	rs259919-A	0.28	3E-9		1.17	[1.11-1.24]	Illumina [7858089] (imputed)	N
595	chr6_ssto_hap7	1355945	1355946	rs259919	20041166	Fellay J	2009-12-24	PLoS Genet	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	6p22.1	ZNRD1, C6orf12	rs259919-?	NR	3E-7	(setpoint)			Illumina [NR]	N
595	chr6_ssto_hap7	1360556	1360557	rs9261269	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p22.1	ZintergenicD1	rs9261269-A		4E-32		0.038	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
595	chr6_ssto_hap7	1362961	1362962	rs8321	23453885	Smoller JW	2013-02-27	Lancet	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NA	6p22.1	MHC region	rs8321-?	NR	8E-9	(5 degree of freedom test)	1.081	[1.04-1.12]	NR [1252901] (imputed)	N
595	chr6_ssto_hap7	1362961	1362962	rs8321	19115949	Limou S	2009-01-01	J Infect Dis	Genomewide association study of an AIDS-nonprogression cohort emphasizes the role played by HLA genes (ANRS Genomewide Association Study 02).	AIDS progression	275 European ancestry seropositive non-progressors, 86 European ancestry seropositive rapid progressors, 1,352 European ancestry seronegative controls	(see Fellay 2007)	6p22.1	ZNRD1, RNF39	rs8321-G	NR	5E-7				Illumina [291119]	N
595	chr6_ssto_hap7	1365780	1365781	rs9261281	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p22.1		rs9261281-?	NR	1E-9		0.0377761	[0.026-0.05] unit increase	Affymetrix [20259828] (imputed)	N
595	chr6_ssto_hap7	1368429	1368430	rs6539	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	6p22.1	NR	rs6539-?	NR	3E-6		0.0618	[0.036-0.088] unit increase	Illumina [at least 560000] (imputed)	N
595	chr6_ssto_hap7	1369679	1369680	rs2301753	26534935	Weng L	2015-11-03	Physiol Genomics	Genetic loci associated with nonobstructive coronary artery disease in Caucasian women.	Nonobstructive coronary artery disease	332 European ancestry female cases, 1,003 European ancestry female controls	NA	6p22.1	RNF39	rs2301753-?	0.883	7E-7		2.5	[1.75-3.57]	Illumina [52371]	N
595	chr6_ssto_hap7	1370730	1370731	rs10947050	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Chickenpox	107,769 European ancestry cases, 15,982 European ancestry controls	NA	6p22.1	NR	rs10947050-?	NR	1E-10		0.0904	[0.063-0.118] unit decrease	Illumina [at least 560000] (imputed)	N
595	chr6_ssto_hap7	1373439	1373440	rs142979264	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs142979264-?		6E-8		1.06	[1.04-1.09]	Illumina [7645193] (imputed)	N
595	chr6_ssto_hap7	1373439	1373440	rs142979264	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p22.1	Intergenic	rs142979264-?		7E-9		1.84	[1.50-2.26]	Illumina [7645193] (imputed)	N
595	chr6_ssto_hap7	1374827	1374828	rs3132682	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	6p22.1	RNF39	rs3132682-C	0.5898	2E-30		0.04162196	[0.035-0.049] unit increase	Affymetrix [~ 2500000] (imputed)	N
595	chr6_ssto_hap7	1375638	1375639	rs1150735	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	RNF39	rs1150735-A	NR	5E-8		5.462	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
595	chr6_ssto_hap7	1376437	1376438	rs1245372	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of linoleic acid to total fatty acids	115,006 European ancestry individuals	NA	6p22.1		rs1245372-A	0.830801	3E-8		0.029543	[0.019-0.04] unit decrease	NR [11722792] (imputed)	N
595	chr6_ssto_hap7	1383381	1383382	rs1264712	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	AL669914.1	rs1264712-A	NR	9E-17		0.0323321	[0.025-0.04] unit decrease	Affymetrix [323858] (imputed)	N
595	chr6_ssto_hap7	1383381	1383382	rs1264712	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p22.1	AL669914.1	rs1264712-A	NR	4E-10		0.0241409	[0.017-0.032] unit decrease	Affymetrix [323858] (imputed)	N
595	chr6_ssto_hap7	1386253	1386254	rs142292417	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	6p22.1		rs142292417-T	0.984003	1E-8		0.0906224	[0.059-0.122] unit increase	NR [11722792] (imputed)	N
595	chr6_ssto_hap7	1390479	1390480	rs3132681	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p22.1		rs3132681-C	0.603	1E-38				Affymetrix [10369434] (imputed)	N
595	chr6_ssto_hap7	1390479	1390480	rs3132681	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	ENSG00000252901	rs3132681-A	NR	2E-8		5.598	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
595	chr6_ssto_hap7	1391800	1391801	rs9261387	28394258	Wild PS	2017-04-10	J Clin Invest	Large-scale genome-wide analysis identifies genetic variants associated with cardiac structure and function.	Isovolumetric relaxation time	21,852 European ancestry individuals	14,787 European ancestry individuals	6p22.1	TRIM31	rs9261387-C	0.92	7E-7		0.003	[0.001-0.005] unit increase	Affymetrix, Illumina [at least 283291] (imputed)	N
595	chr6_ssto_hap7	1394112	1394113	rs1264705	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium HDL	115,082 European ancestry individuals	NA	6p22.1		rs1264705-G	0.868792	2E-12		0.0396576	[0.029-0.051] unit increase	NR [11722792] (imputed)	N
595	chr6_ssto_hap7	1395586	1395587	rs1156533	33888516	Zheng T	2021-04-22	Gut	Genome-wide analysis of 944 133 individuals provides insights into the etiology of haemorrhoidal disease.	Haemorrhoidal disease	218,920 European ancestry cases, 725,213 European ancestry controls	NA	6p22.1	TRIM31	rs1156533-?	0.2952	2E-8		0.98	[0.97-0.98]	Affymetrix, Illumina [8494288] (imputed)	N
595	chr6_ssto_hap7	1395980	1395981	rs17187854	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	6p22.1	intergenic	rs17187854-T	0.0032	3E-12		0.2201749	[0.16-0.28] unit decrease	Affymetrix [~ 2500000] (imputed)	N
595	chr6_ssto_hap7	1396468	1396469	rs916570	31272903	Sunadome H	2019-07-01	Allergol Int	Correlation between eosinophil count, its genetic background and body mass index: The Nagahama Study.	Eosinophil counts	4,650 East Asian ancestry individuals	NA	6p22.1	NR	rs916570-G	0.19	1E-7		0.1384	NR unit increase	Illumina [103680] (imputed)	N
595	chr6_ssto_hap7	1396468	1396469	rs916570	31272903	Sunadome H	2019-07-01	Allergol Int	Correlation between eosinophil count, its genetic background and body mass index: The Nagahama Study.	Eosinophil counts	4,206 East Asian ancestry individuals	NA	6p22.1	NR	rs916570-G	0.19	3E-7		0.1428	NR unit increase	Illumina [103680] (imputed)	N
595	chr6_ssto_hap7	1397447	1397449	rs143211693	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	6p22.1	Intergenic	rs143211693-?	NR	5E-6		0.0195207	[0.011-0.028] unit increase	Illumina [13519193] (imputed)	N
595	chr6_ssto_hap7	1397447	1397449	rs143211693	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p22.1	Intergenic	rs143211693-?	NR	2E-6		0.0186889	[0.011-0.026] unit increase	Illumina [13520550] (imputed)	N
595	chr6_ssto_hap7	1397447	1397449	rs143211693	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	6p22.1	Intergenic	rs143211693-?	NR	4E-9		0.026814	[0.018-0.036] unit increase	Illumina [13520550] (imputed)	N
595	chr6_ssto_hap7	1398021	1398022	rs1264697	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	76 Han Chinese ancestry cases, 889 Han Chinese ancestry controls	NA	6p22.1	TRIM31	rs1264697-?	NR	1E-8	(conditional on rs12110437)			Illumina [3403929] (imputed)	N
595	chr6_ssto_hap7	1399066	1399067	rs13214608	33831438	Williams JE	2021-04-05	Genomics	Key genetic variants associated with variation of milk oligosaccharides from diverse human populations.	Human milk oligosaccharide concentration (lacto-N-fucopentaose III) in non-secretors	90 European, Sub-Saharan African, Hispanic or unknown ancestry individuals	NA	6p22.1		rs13214608-?	NR	3E-11				Illumina [1128286]	N
595	chr6_ssto_hap7	1400434	1400435	rs1111180	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	6p22.1	TRIM31-AS1	rs1111180-C	0.5667	4E-37		0.04561007	[0.039-0.053] unit decrease	Affymetrix [~ 2500000] (imputed)	N
595	chr6_ssto_hap7	1400434	1400435	rs1111180	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	6p22.1	TRIM31-AS1	rs1111180-C	0.5666	2E-35		0.04474978	[0.038-0.052] unit decrease	Affymetrix [~ 2500000] (imputed)	N
595	chr6_ssto_hap7	1401389	1401390	rs1110446	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6p22.1		rs1110446-?	NR	3E-6		1.05914	[1.04-1.08]	NR [685523]	N
595	chr6_ssto_hap7	1401389	1401390	rs1110446	29784950	Sawai H	2018-05-21	Sci Rep	Genome-wide association study identified new susceptible genetic variants in HLA class I region for hepatitis B virus-related hepatocellular carcinoma.	Hepatocellular carcinoma in hepatitis B infection	473 Japanese ancestry chronic hepatitis and hepatocellular carcinoma cases, 516 Japanese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma	153 Japanese ancestry chronic hepatitis and hepatocellular carcinoma cases, 614 Japanese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma, 94 Chinese ancestry chronic hepatitis and hepatocellular carcinoma cases, 187 Chinese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma, 185 Thai ancestry chronic hepatitis and hepatocellular carcinoma cases, 198 Thai ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma	6p22.1	HLA	rs1110446-?	NR	9E-13		1.93	[1.57-2.37] Japanese	Affymetrix [447830]	N
595	chr6_ssto_hap7	1401389	1401390	rs1110446	29784950	Sawai H	2018-05-21	Sci Rep	Genome-wide association study identified new susceptible genetic variants in HLA class I region for hepatitis B virus-related hepatocellular carcinoma.	Hepatocellular carcinoma in hepatitis B infection	473 Japanese ancestry chronic hepatitis and hepatocellular carcinoma cases, 516 Japanese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma	153 Japanese ancestry chronic hepatitis and hepatocellular carcinoma cases, 614 Japanese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma, 94 Chinese ancestry chronic hepatitis and hepatocellular carcinoma cases, 187 Chinese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma, 185 Thai ancestry chronic hepatitis and hepatocellular carcinoma cases, 198 Thai ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma	6p22.1	HLA	rs1110446-?	NR	3E-10	(Japanese)	1.93	[1.57-2.37]	Affymetrix [447830]	N
595	chr6_ssto_hap7	1401782	1401783	rs1116221	32771030	Tangtanatakul P	2020-08-08	Arthritis Res Ther	Meta-analysis of genome-wide association study identifies FBN2 as a novel locus associated with systemic lupus erythematosus in Thai population.	Systemic lupus erythematosus	487 Thai cases, 1,606 Thai controls	405 Thai cases, 1,590 Thai controls	6p22.1	TRIM31	rs1116221-A	0.08	3E-6		1.594	[NR]	Illumina [421909] (imputed)	N
595	chr6_ssto_hap7	1403077	1403078	rs3094136	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p22.1	NR	rs3094136-C	0.44	2E-6	(IFNAR2_of_CD4p_T)			Illumina [5084123] (imputed)	N
595	chr6_ssto_hap7	1403257	1403258	rs111537560	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mumps	31,227 European ancestry cases, 54,153 European ancestry controls	NA	6p22.1	NR	rs111537560-?	NR	5E-16		0.5917	[0.45-0.74] unit increase	Illumina [at least 560000] (imputed)	N
595	chr6_ssto_hap7	1403644	1403645	rs3132680	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6p22.1	RNF39	rs3132680-?	NR	7E-6	(SM 18:0)	0.17183183	[0.097-0.247] unit decrease	Affymetrix [at least 2500000] (imputed)	N
595	chr6_ssto_hap7	1403708	1403709	rs2517664	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p22.1		rs2517664-T	0.816537	9E-13		1.0407012	[1.03-1.05]	Affymetrix, Illumina [9851866] (imputed)	N
595	chr6_ssto_hap7	1403708	1403709	rs2517664	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	TRIM31-AS1	rs2517664-T	NR	1E-8		5.707	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
595	chr6_ssto_hap7	1403879	1403880	rs6915823	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	6p22.1	NR	rs6915823-?	NR	1E-23		10.046	NR z score decrease	Illumina [at least 830937] (imputed)	N
595	chr6_ssto_hap7	1404225	1404226	rs7767188	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	6p22.1	NR	rs7767188-A	0.21	2E-8		1.06	[1.04-1.08]	Illumina [20370935] (imputed)	N
595	chr6_ssto_hap7	1404296	1404297	rs2844795	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total phospholipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	6p22.1		rs2844795-C	0.480583	2E-9		0.0234643	[0.016-0.031] unit decrease	NR [11722792] (imputed)	N
595	chr6_ssto_hap7	1404296	1404297	rs2844795	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	6p22.1		rs2844795-C	0.480583	2E-9		0.0242799	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
595	chr6_ssto_hap7	1404296	1404297	rs2844795	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total fatty acid levels	115,006 European ancestry individuals	NA	6p22.1		rs2844795-C	0.480588	2E-9		0.0242374	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
595	chr6_ssto_hap7	1404296	1404297	rs2844795	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholines levels	115,006 European ancestry individuals	NA	6p22.1		rs2844795-C	0.480588	6E-9		0.0224748	[0.015-0.03] unit decrease	NR [11722792] (imputed)	N
595	chr6_ssto_hap7	1404296	1404297	rs2844795	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-6 fatty acid levels	115,006 European ancestry individuals	NA	6p22.1		rs2844795-C	0.480588	5E-13		0.0289827	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
595	chr6_ssto_hap7	1404296	1404297	rs2844795	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Linoleic acid levels	115,006 European ancestry individuals	NA	6p22.1		rs2844795-C	0.480588	4E-14		0.0305085	[0.023-0.038] unit decrease	NR [11722792] (imputed)	N
595	chr6_ssto_hap7	1404296	1404297	rs2844795	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	6p22.1		rs2844795-C	0.480583	3E-8		0.0227871	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
595	chr6_ssto_hap7	1404521	1404522	rs2517601	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in diabetes	70,762 European ancestry individuals, 20,967 African American individuals	NA	6p22.1	TRIM31	rs2517601-C	0.115	4E-12		0.956	[0.69-1.23] unit decrease	Affymetrix [NR] (imputed)	N
595	chr6_ssto_hap7	1404521	1404522	rs2517601	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p22.1	NR	rs2517601-C	0.1326	5E-13		0.0126	[0.0093-0.0159] unit decrease	NR [7666894] (imputed)	N
595	chr6_ssto_hap7	1404759	1404760	rs78026509	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	6p22.1	TRIM31, TRIM31-AS1	rs78026509-G	0.0759	2E-9		0.04028003	[0.027-0.053] unit decrease	Affymetrix [~ 2500000] (imputed)	N
595	chr6_ssto_hap7	1405551	1405552	rs2523992	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p22.1	NR	rs2523992-G	0.1571	2E-7	(EA)	0.0468	[0.029-0.064] unit decrease	Illumina [~ 11800000] (imputed)	N
595	chr6_ssto_hap7	1406313	1406314	rs2023472	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p22.1		rs2023472-A	0.411	6E-25				Affymetrix [10369434] (imputed)	N
595	chr6_ssto_hap7	1406313	1406314	rs2023472	23417110	Tin A	2013-02-16	Hum Genet	Genome-wide association study identified the human leukocyte antigen region as a novel locus for plasma beta-2 microglobulin.	Beta-2 microglubulin plasma levels	6,728 European ancestry individuals		6p22.1	TRIM31	rs2023472-A	0.38	3E-15		0.03	[0.022-0.038] unit increase	Affymetrix [2500000] (imputed)	N
595	chr6_ssto_hap7	1406566	1406567	rs11961190	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	6p22.1	TRIM31, TRIM31-AS1	rs11961190-T	0.00312500000000004	2E-22		0.19694449	[0.16-0.24] unit decrease	Affymetrix [93095623] (imputed)	N
595	chr6_ssto_hap7	1406566	1406567	rs11961190	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6p22.1	TRIM31, TRIM31-AS1	rs11961190-T	0.00312500000000004	1E-23		0.20271449	[0.16-0.24] unit decrease	Affymetrix [93095623] (imputed)	N
595	chr6_ssto_hap7	1406566	1406567	rs11961190	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	6p22.1	TRIM31, TRIM31-AS1	rs11961190-T	0.00311799999999995	3E-29		0.22552978	[0.19-0.26] unit decrease	Affymetrix [93095623] (imputed)	N
595	chr6_ssto_hap7	1406566	1406567	rs11961190	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6p22.1	TRIM31, TRIM31-AS1	rs11961190-T	0.00311700000000004	4E-27		0.21662813	[0.18-0.26] unit decrease	Affymetrix [93095623] (imputed)	N
595	chr6_ssto_hap7	1407102	1407103	rs9261418	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	6p22.1	TRIM15	rs9261418-A	0.144604	2E-8		5.61	z score increase	NR [10847151] (imputed)	N
595	chr6_ssto_hap7	1407577	1407578	rs9378220	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	6p22.1	TRIM31	rs9378220-?	NR	4E-18		0.0309	[0.025-0.037] unit increase	Affymetrix [5701386] (imputed)	N
595	chr6_ssto_hap7	1407671	1407672	rs2523990	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	6p22.1	TRIM31, TRIM31-AS1	rs2523990-G	0.538375	2E-32		0.029605733	[0.025-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
595	chr6_ssto_hap7	1407671	1407672	rs2523990	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6p22.1	TRIM31, TRIM31-AS1	rs2523990-G	0.538376	5E-71		0.044279587	[0.039-0.049] unit decrease	Affymetrix [93095623] (imputed)	N
595	chr6_ssto_hap7	1408719	1408720	rs2523989	33909500	Moll M	2021-04-28	Am J Physiol Lung Cell Mol Physiol	A Systematic Analysis of Protein-altering Exonic Variants in Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease	up to 31,465 European ancestry cases, up to 203,688 European ancestry controls, up to 1,413 African ancestry cases, up to 6,080 African ancestry controls, up to 287 East Asian ancestry cases, up to 7,484 East Asian ancestry controls, up to 61 Hispanic cases, up to 613 Hispanic controls	NA	6p22.1	TRIM31	rs2523989-T	0.17	1E-10		1.09	[1.06 -1.12]	Illumina [at least 109036]	N
595	chr6_ssto_hap7	1408719	1408720	rs2523989	25936594	Tomer Y	2015-04-27	J Autoimmun	Genome wide identification of new genes and pathways in patients with both autoimmune thyroiditis and type 1 diabetes.	Type 1 diabetes and autoimmune thyroid diseases	346 European ancestry cases, 727 European ancestry controls	185 European ancestry cases, 340 European ancestry controls	6p22.1	TRIM31	rs2523989-A	NR	2E-8		1.7499		Illumina [514008]	N
595	chr6_ssto_hap7	1410436	1410437	rs2523987	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p22.1	TRIM31, TRIM31-AS1, TRIM40, SNORA48	rs2523987-C	0.1149598	2E-13	(EA, MHC class I polypeptide-related sequence A)	0.4957	[0.36-0.63] unit increase	Affymetrix [509946]	N
595	chr6_ssto_hap7	1411551	1411552	rs9261425	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	6p22.1	NR	rs9261425-?	NR	6E-7		0.0545	[0.033-0.076] unit increase	Illumina [at least 560000] (imputed)	N
595	chr6_ssto_hap7	1412185	1412186	rs28780084	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p22.1	NR	rs28780084-?	NR	9E-8		0.0841	[0.053-0.115] unit decrease	Illumina [at least 560000] (imputed)	N
595	chr6_ssto_hap7	1414152	1414153	rs2523978	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	6p22.1	TRIM31	rs2523978-C	0.869967	4E-24		0.0286531	[0.023-0.034] unit increase	Affymetrix [NR] (imputed)	N
595	chr6_ssto_hap7	1414152	1414153	rs2523978	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	6p22.1	TRIM31	rs2523978-C	0.869885	7E-28		0.031888	[0.026-0.038] unit increase	Affymetrix [NR] (imputed)	N
595	chr6_ssto_hap7	1416866	1416867	rs9261431	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p22.1	NR	rs9261431-?	NR	2E-19		0.1221	[0.095-0.149] unit increase	Illumina [at least 560000] (imputed)	N
595	chr6_ssto_hap7	1418053	1418054	rs115254023	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6p22.1		rs115254023-T	0.018886	8E-29		0.092888236	[0.077-0.109] unit increase	Affymetrix [93095623] (imputed)	N
595	chr6_ssto_hap7	1423382	1423383	rs1419674	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p22.1	NR	rs1419674-T	0.02787	7E-9	(SBDS)	0.03953	NR unit increase	Illumina [1671387] (imputed)	N
595	chr6_ssto_hap7	1423584	1423585	rs2517592	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	SNORA48	rs2517592-T	NR	5E-8		5.465	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
595	chr6_ssto_hap7	1423811	1423812	rs10947055	21348951	Parsa A	2011-02-01	Clin Transl Sci	Hypertrophy-associated polymorphisms ascertained in a founder cohort applied to heart failure risk and mortality.	Cardiac hypertrophy	851 Old Order Amish individuals	NA	6p22.1	TRIM38	rs10947055-?	NR	2E-7	(additive, recessive)			Affymetrix [361034]	N
595	chr6_ssto_hap7	1424560	1424561	rs2844790	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	SNORA48	rs2844790-C	NR	4E-10		6.271	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
595	chr6_ssto_hap7	1424560	1424561	rs2844790	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p22.1	NR	rs2844790-?	NR	1E-8		0.1888	[0.12-0.25] unit increase	Illumina [at least 560000] (imputed)	N
595	chr6_ssto_hap7	1431436	1431437	rs61211515	29404672	Roshandel D	2018-02-05	Diabetologia	Meta-genome-wide association studies identify a locus on chromosome 1 and multiple variants in the MHC region for serum C-peptide in type 1 diabetes.	Stimulated C-peptide levels in type I diabetes	1,303 European ancestry individuals	NA	6p22.1	MHC	rs61211515-?	0.16	1E-7		0.39	[0.25-0.53] unit decrease	Illumina [8978838] (imputed)	N
595	chr6_ssto_hap7	1431436	1431437	rs61211515	29404672	Roshandel D	2018-02-05	Diabetologia	Meta-genome-wide association studies identify a locus on chromosome 1 and multiple variants in the MHC region for serum C-peptide in type 1 diabetes.	C-peptide levels in type I diabetes	3,479 European ancestry individuals	NA	6p22.1	MHC	rs61211515-?	0.16	2E-6				Illumina [7988630] (imputed)	N
595	chr6_ssto_hap7	1432025	1432026	rs115333019	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	6p22.1	SNORA48, TRIM40	rs115333019-G	0.00916799999999995	8E-43		0.1634603	[0.14-0.19] unit decrease	Affymetrix [93095623] (imputed)	N
595	chr6_ssto_hap7	1432116	1432117	rs1362104	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	SNORA48	rs1362104-A	NR	2E-10		6.398	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
595	chr6_ssto_hap7	1435613	1435614	rs28780086	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	6p22.1	TRIM40	rs28780086-G	0.023328	1E-25		0.078185886	[0.064-0.093] unit increase	Affymetrix [93095623] (imputed)	N
595	chr6_ssto_hap7	1435613	1435614	rs28780086	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	6p22.1	TRIM40	rs28780086-G	0.023332	8E-30		0.093978085	[0.078-0.11] unit decrease	Affymetrix [93095623] (imputed)	N
595	chr6_ssto_hap7	1439134	1439135	rs9261484	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	6p22.1	TRIM40	rs9261484-T	0.2451	2E-8		0.0635	[0.042-0.085] unit decrease	NR [7784415] (imputed)	N
595	chr6_ssto_hap7	1441310	1441310	rs146464922	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	6p22.1	TRIM40	rs146464922-CTT	0.014425	8E-11		0.05988576	[0.042-0.078] unit increase	Affymetrix [93095623] (imputed)	N
595	chr6_ssto_hap7	1441522	1441523	rs117432766	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6p22.1	TRIM40	rs117432766-A	0.016714	1E-25		0.09170394	[0.075-0.109] unit increase	Affymetrix [93095623] (imputed)	N
596	chr6_ssto_hap7	1444002	1444003	rs12202131	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6p22.1	TRIM40	rs12202131-A	0.052983	2E-12		0.06297606	[0.045-0.081] unit increase	Affymetrix [93095623] (imputed)	N
596	chr6_ssto_hap7	1444407	1444408	rs3815082	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p22.1	NR	rs3815082-G	0.295	9E-12	(IFNAR2_of_CD20p)			Illumina [5084123] (imputed)	N
596	chr6_ssto_hap7	1444759	1444760	rs2256146	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p22.1	NR	rs2256146-C	0.02787	7E-9	(SBDS)	0.03953	NR unit increase	Illumina [1671387] (imputed)	N
596	chr6_ssto_hap7	1450335	1450336	rs9468692	20041166	Fellay J	2009-12-24	PLoS Genet	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	6p22.1	TRIM10	rs9468692-?	NR	1E-6	(setpoint)			Illumina [NR]	N
596	chr6_ssto_hap7	1451085	1451086	rs9468693	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	6p22.1	TRIM10	rs9468693-C	0.071694	2E-29		0.0510031	[0.043-0.059] unit decrease	Affymetrix [93095623] (imputed)	N
596	chr6_ssto_hap7	1451908	1451909	rs2022065	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	6p22.1	TRIM10	rs2022065-T	0.296544	2E-49		0.041531093	[0.036-0.047] unit decrease	Affymetrix [93095623] (imputed)	N
596	chr6_ssto_hap7	1451908	1451909	rs2022065	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6p22.1	TRIM10	rs2022065-T	0.296544	4E-41		0.041549113	[0.035-0.048] unit decrease	Affymetrix [93095623] (imputed)	N
596	chr6_ssto_hap7	1451908	1451909	rs2022065	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	6p22.1	TRIM10	rs2022065-T	0.296537	4E-62		0.05393633	[0.048-0.06] unit decrease	Affymetrix [93095623] (imputed)	N
596	chr6_ssto_hap7	1451908	1451909	rs2022065	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	6p22.1	TRIM10	rs2022065-T	0.2963	3E-25		0.04064069	[0.033-0.048] unit decrease	Affymetrix [~ 2500000] (imputed)	N
596	chr6_ssto_hap7	1451908	1451909	rs2022065	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	6p22.1	TRIM10	rs2022065-T	0.2963	1E-23		0.03931364	[0.032-0.047] unit decrease	Affymetrix [~ 2500000] (imputed)	N
596	chr6_ssto_hap7	1451908	1451909	rs2022065	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	6p22.1	TRIM10	rs2022065-T	0.2963	3E-30		0.04433495	[0.037-0.052] unit decrease	Affymetrix [~ 2500000] (imputed)	N
596	chr6_ssto_hap7	1451908	1451909	rs2022065	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	6p22.1	TRIM10	rs2022065-T	0.2962	2E-35		0.04860256	[0.041-0.056] unit decrease	Affymetrix [~ 2500000] (imputed)	N
596	chr6_ssto_hap7	1451908	1451909	rs2022065	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	6p22.1	TRIM10	rs2022065-T	0.2962	1E-34		0.04804721	[0.04-0.056] unit decrease	Affymetrix [~ 2500000] (imputed)	N
596	chr6_ssto_hap7	1452841	1452842	rs116596081	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	6p22.1	TRIM10	rs116596081-A	0.011844	3E-46		0.14981039	[0.13-0.17] unit decrease	Affymetrix [93095623] (imputed)	N
596	chr6_ssto_hap7	1452841	1452842	rs116596081	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6p22.1	TRIM10	rs116596081-A	0.0118470000000001	6E-38		0.13759963	[0.12-0.16] unit decrease	Affymetrix [93095623] (imputed)	N
596	chr6_ssto_hap7	1455259	1455260	rs144731721	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Red cell distribution width	441,263 European ancestry individuals	NA	6p22.1		rs144731721-?	NR	1E-14		0.080611	[0.059-0.102] unit increase	NR [9800000] (imputed)	N
596	chr6_ssto_hap7	1455259	1455260	rs144731721	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean reticulocyte volume	436,944 European ancestry individuals	NA	6p22.1		rs144731721-?	NR	1E-42		0.142474	[0.12-0.16] unit increase	NR [9800000] (imputed)	N
596	chr6_ssto_hap7	1455259	1455260	rs144731721	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	6p22.1	TRIM10	rs144731721-T	0.00866500000000004	5E-16		0.096417926	[0.073-0.12] unit increase	Affymetrix [93095623] (imputed)	N
596	chr6_ssto_hap7	1455259	1455260	rs144731721	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	6p22.1	TRIM10	rs144731721-T	0.00867700000000005	2E-39		0.15744652	[0.13-0.18] unit increase	Affymetrix [93095623] (imputed)	N
596	chr6_ssto_hap7	1455259	1455260	rs144731721	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	6p22.1	TRIM10	rs144731721-T	0.00866699999999998	6E-12		0.083550446	[0.06-0.107] unit increase	Affymetrix [93095623] (imputed)	N
596	chr6_ssto_hap7	1455259	1455260	rs144731721	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	6p22.1	TRIM10	rs144731721-T	0.0068	4E-11		0.1617919	[0.11-0.21] unit increase	Affymetrix [~ 2500000] (imputed)	N
596	chr6_ssto_hap7	1457069	1457070	rs116113631	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	6p22.1	TRIM10	rs116113631-T	0.010294	3E-68		0.19197759	[0.17-0.21] unit decrease	Affymetrix [93095623] (imputed)	N
596	chr6_ssto_hap7	1457069	1457070	rs116113631	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6p22.1	TRIM10	rs116113631-T	0.010297	3E-66		0.19043158	[0.17-0.21] unit decrease	Affymetrix [93095623] (imputed)	N
596	chr6_ssto_hap7	1458006	1458006	rs148280884	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	6p22.1	TRIM10	rs148280884-CAT	0.0122	4E-25		0.1718773	[0.14-0.2] unit decrease	Affymetrix [~ 2500000] (imputed)	N
596	chr6_ssto_hap7	1458006	1458006	rs148280884	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	6p22.1	TRIM10	rs148280884-CAT	0.0122	2E-27		0.1797411	[0.15-0.21] unit decrease	Affymetrix [~ 2500000] (imputed)	N
596	chr6_ssto_hap7	1458006	1458006	rs148280884	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	6p22.1	TRIM10	rs148280884-CAT	0.0122	2E-23		0.1655507	[0.13-0.2] unit decrease	Affymetrix [~ 2500000] (imputed)	N
596	chr6_ssto_hap7	1458006	1458006	rs148280884	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	6p22.1	TRIM10	rs148280884-CAT	0.0122	6E-25		0.1707215	[0.14-0.2] unit decrease	Affymetrix [~ 2500000] (imputed)	N
596	chr6_ssto_hap7	1458252	1458253	rs1573296	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	6p22.1	TRIM10	rs1573296-G	0.1349	2E-11		0.03526502	[0.025-0.046] unit decrease	Affymetrix [~ 2500000] (imputed)	N
596	chr6_ssto_hap7	1458252	1458253	rs1573296	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	6p22.1	TRIM10	rs1573296-G	0.1349	1E-14		0.04046172	[0.03-0.051] unit decrease	Affymetrix [~ 2500000] (imputed)	N
596	chr6_ssto_hap7	1458320	1458321	rs1318638	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	6p22.1	TRIM10	rs1318638-T	0.0648	3E-9		0.04268956	[0.029-0.057] unit increase	Affymetrix [~ 2500000] (imputed)	N
596	chr6_ssto_hap7	1458320	1458321	rs1318638	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin concentration	172,851 European ancestry individuals	NA	6p22.1	TRIM10	rs1318638-T	0.0649	1E-20		0.06542649	[0.052-0.079] unit decrease	Affymetrix [~ 2500000] (imputed)	N
596	chr6_ssto_hap7	1458550	1458551	rs142460927	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	6p22.1	TRIM10	rs142460927-C	0.00303299999999995	5E-25		0.21333578	[0.17-0.25] unit decrease	Affymetrix [93095623] (imputed)	N
596	chr6_ssto_hap7	1458889	1458890	rs12212092	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	6p22.1	TRIM10	rs12212092-T	0.0644400000000001	6E-20		0.043098915	[0.034-0.052] unit decrease	Affymetrix [93095623] (imputed)	N
596	chr6_ssto_hap7	1458889	1458890	rs12212092	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	6p22.1	TRIM10	rs12212092-T	0.06443	7E-84		0.096261576	[0.087-0.106] unit decrease	Affymetrix [93095623] (imputed)	N
596	chr6_ssto_hap7	1458889	1458890	rs12212092	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	6p22.1	TRIM10	rs12212092-T	0.064469	1E-29		0.051481474	[0.043-0.06] unit decrease	Affymetrix [93095623] (imputed)	N
596	chr6_ssto_hap7	1458889	1458890	rs12212092	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6p22.1	TRIM10	rs12212092-T	0.064468	1E-30		0.09085926	[0.075-0.106] unit decrease	Affymetrix [93095623] (imputed)	N
596	chr6_ssto_hap7	1458889	1458890	rs12212092	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	6p22.1	TRIM10	rs12212092-T	0.0648	1E-24		0.07379727	[0.06-0.088] unit decrease	Affymetrix [~ 2500000] (imputed)	N
596	chr6_ssto_hap7	1458889	1458890	rs12212092	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	6p22.1	TRIM10	rs12212092-T	0.0648	8E-24		0.07307307	[0.059-0.087] unit decrease	Affymetrix [~ 2500000] (imputed)	N
596	chr6_ssto_hap7	1458889	1458890	rs12212092	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	6p22.1	TRIM10	rs12212092-T	0.0648	3E-24		0.07368067	[0.059-0.088] unit decrease	Affymetrix [~ 2500000] (imputed)	N
596	chr6_ssto_hap7	1461574	1461575	rs17188113	29562276	Venkateswaran S	2018-03-01	Inflamm Bowel Dis	Enhanced Contribution of HLA in Pediatric Onset Ulcerative Colitis.	Childhood onset ulcerative colitis	466 European ancestry cases, 2,099 European ancestry controls	NA	6p22.1	HLA	rs17188113-?		9E-7		1.8086454	[1.57-2.05]	Affymetrix [3996700] (imputed)	N
596	chr6_ssto_hap7	1462162	1462163	rs17194474	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	6p22.1	TRIM15	rs17194474-C	0.028724	4E-18		0.055055395	[0.043-0.067] unit decrease	Affymetrix [93095623] (imputed)	N
596	chr6_ssto_hap7	1466428	1466429	rs9368624	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p22.1	TRIM15, TRIM10, TRIM40, TRIM31-AS1, TRIM31, TRIM26, PAIP1P1	rs9368624-A	0.1996982	3E-11	(EA, MHC class I polypeptide-related sequence A)	0.3704	[0.26-0.48] unit decrease	Affymetrix [509946]	N
596	chr6_ssto_hap7	1468100	1468101	rs1018846	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	6p22.1	TRIM15	rs1018846-A	0.064503	4E-25		0.046360865	[0.038-0.055] unit increase	Affymetrix [93095623] (imputed)	N
596	chr6_ssto_hap7	1468317	1468318	rs2107195	30037793	Haapasalo K	2018-09-21	Infect Immun	The Psoriasis Risk Allele <i>HLA-C*06:02</i> Shows Evidence of Association with Chronic or Recurrent Streptococcal Tonsillitis.	Tonsillitis	95 Finnish cases, 504 Finnish controls	NA	6p22.1	TRIM10, TRIM15	rs2107195-?		5E-6		3.7		Illumina [100000]	N
596	chr6_ssto_hap7	1468613	1468614	rs1029239	34642315	Ferreiro-Iglesias A	2021-10-12	Nat Commun	Germline determinants of humoral immune response to HPV-16 protect against oropharyngeal cancer.	Human papilloma virus 16 positive oropharyngeal cancer	1,078 European ancestry cases, 5,256 European ancestry controls	NA	6p22.1		rs1029239-G	NR	3E-6		1.2904		Illumina [7574753] (imputed)	N
596	chr6_ssto_hap7	1469096	1469097	rs1029238	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	6p22.1	TRIM15	rs1029238-A	0.089377	4E-11		0.025450304	[0.018-0.033] unit increase	Affymetrix [93095623] (imputed)	N
596	chr6_ssto_hap7	1470150	1470151	rs929156	33909500	Moll M	2021-04-28	Am J Physiol Lung Cell Mol Physiol	A Systematic Analysis of Protein-altering Exonic Variants in Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease	up to 31,465 European ancestry cases, up to 203,688 European ancestry controls, up to 1,413 African ancestry cases, up to 6,080 African ancestry controls, up to 287 East Asian ancestry cases, up to 7,484 East Asian ancestry controls, up to 61 Hispanic cases, up to 613 Hispanic controls	NA	6p22.1	TRIM15	rs929156-G	0.76	8E-8		1.06	[1.04 -1.09]	Illumina [at least 109036]	N
596	chr6_ssto_hap7	1483770	1483771	rs2106072	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p22.1	NR	rs2106072-A	0.13	3E-10		1.11	[1.08-1.15]	Affymetrix [9886854] (imputed)	N
596	chr6_ssto_hap7	1483770	1483771	rs2106072	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p22.1	NR	rs2106072-A	0.13	9E-13			[NR]	Affymetrix [9886854] (imputed)	N
596	chr6_ssto_hap7	1483770	1483771	rs2106072	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in non-current smokers	16,488 European ancestry cases, 169,688 European ancestry controls	NA	6p22.1	NR	rs2106072-A	0.13	3E-10		1.12	[1.08-1.15]	Affymetrix [9886854] (imputed)	N
596	chr6_ssto_hap7	1485558	1485559	rs2517622	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Proheparin-binding EGF-like growth factor levels	21,758 European ancestry individuals	9,173 individuals	6p22.1		rs2517622-C	0.11	1E-9		0.0845	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
596	chr6_ssto_hap7	1485558	1485559	rs2517622	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Help-seeking from a psychiatrist	36,286 British ancestry cases, 297,126 British ancestry controls	NA	6p22.1	NR	rs2517622-G	0.863	4E-11		1.0799136	NR	NR [5276842] (imputed)	N
596	chr6_ssto_hap7	1485558	1485559	rs2517622	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Help-seeking from a GP (without major depressive disorder symptoms)	8,632 British ancestry cases, 49,493 British ancestry controls	NA	6p22.1	NR	rs2517622-?	NR	3E-6		1.1223345	[1.07-1.18]	NR [5276842] (imputed)	N
596	chr6_ssto_hap7	1495678	1495679	rs2523722	22883433	Irish Schizophrenia Genomics Consortium and the Wellcome Trust Case Control Consortium 2	2012-08-07	Biol Psychiatry	Genome-wide association study implicates HLA-C*01:02 as a risk factor at the major histocompatibility complex locus in schizophrenia.	Schizophrenia	1,606 European ancestry cases, 1,794 European ancestry controls	13,195 European ancestry cases, 31,021 European ancestry controls	6p22.1	MHC, TRIM26	rs2523722-G	0.737	1E-16		1.25	[1.12-1.39]	Affymetrix [6212339]	N
596	chr6_ssto_hap7	1497291	1497292	rs2523720	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p22.1		rs2523720-C	0.836	9E-50				Affymetrix [10369434] (imputed)	N
596	chr6_ssto_hap7	1498240	1498241	rs2428503	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	TRIM26	rs2428503-T	NR	2E-9		0.0221273	[0.015-0.029] unit decrease	Affymetrix [127266] (imputed)	N
596	chr6_ssto_hap7	1498724	1498725	rs2523719	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	6p22.1	TRIM26	rs2523719-G	0.830078	2E-21		0.0245541	[0.019-0.03] unit increase	Affymetrix [NR] (imputed)	N
596	chr6_ssto_hap7	1499732	1499733	rs2517611	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (anti-inflammatory and antirheumatic products, non-steroids)	74,150 European ancestry cases, 90,370 European ancestry controls, 29,694 East Asian ancestry cases, 149,032 East Asian ancestry controls	NA	6p22.1		rs2517611-G	NR	2E-9		0.0422	[0.028-0.056] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
596	chr6_ssto_hap7	1499732	1499733	rs2517611	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Asthma	38,369 European ancestry cases, 411,131 European ancestry controls, 13,015 East Asian ancestry cases, 162,933 East Asian ancestry controls	NA	6p22.1		rs2517611-G	NR	3E-11		0.0613	[0.043-0.079] unit increase	Affymetrix, Illumina [25837673] (imputed)	N
596	chr6_ssto_hap7	1499732	1499733	rs2517611	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (anti-inflammatory and antirheumatic products, non-steroids)	74,150 European ancestry cases, 90,370 European ancestry controls	NA	6p22.1	TRIM26	rs2517611-G	0.229963	7E-10		0.050484303	[0.034-0.067] unit decrease	Affymetrix [7288503] (imputed)	N
596	chr6_ssto_hap7	1500915	1500916	rs1117490	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (childhood onset)	9,433 British ancestry cases, 318,237 British ancestry controls	NA	6p22.1	TRIM26, TRIM15, TRIM39	rs1117490-C	0.234	3E-8		1.1	[1.063-1.137]	Affymetrix [10894596] (imputed)	N
596	chr6_ssto_hap7	1500915	1500916	rs1117490	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (adult onset)	21,564 British ancestry cases, 318,237 British ancestry controls	NA	6p22.1	TRIM26, TRIM15, TRIM39	rs1117490-C	0.234	7E-7		1.059	[1.036-1.084]	Affymetrix [10894596] (imputed)	N
596	chr6_ssto_hap7	1509835	1509836	rs2844775	24489884	Mick E	2014-01-01	PLoS One	Genome-wide association study of proneness to anger.	Anger	8,747 European ancestry individuals	NA	6p22.1	TRIM31, TRIM10, PPP1R11, TRIM40, TRIM15, HLA-A29.1, TRIM26, HCG9, ZNRD1, RNF39	rs2844775-A	0.25	8E-7	(Temperament)	0.15	[NR] unit decrease	Affymetrix [677643]	N
596	chr6_ssto_hap7	1512294	1512295	rs2188100	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p22.1	NR	rs2188100-A	0.16	5E-11		1.15	[1.1-1.2]	Affymetrix [9886854] (imputed)	N
596	chr6_ssto_hap7	1512294	1512295	rs2188100	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p22.1	NR	rs2188100-A	0.16	5E-14			[NR]	Affymetrix [9886854] (imputed)	N
596	chr6_ssto_hap7	1512294	1512295	rs2188100	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in never smokers	8,631 European ancestry cases, 120,544 European ancestry controls	NA	6p22.1	NR	rs2188100-A	0.16	2E-11		1.15	[1.11-1.2]	Affymetrix [9886854] (imputed)	N
596	chr6_ssto_hap7	1512806	1512807	rs1345229	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	6p22.1	TRIM26	rs1345229-A	0.085649	1E-9		0.023856346	[0.016-0.032] unit increase	Affymetrix [93095623] (imputed)	N
596	chr6_ssto_hap7	1517089	1517090	rs9380159	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p22.1	NR	rs9380159-?	NR	8E-13		0.1064	[0.077-0.136] unit decrease	Illumina [at least 560000] (imputed)	N
596	chr6_ssto_hap7	1520439	1520440	rs2517602	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	TRIM26	rs2517602-T	NR	1E-9		6.068	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
596	chr6_ssto_hap7	1521530	1521530	rs72031595	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	6p22.1		rs72031595-CT	0.551943	5E-9		0.014966801	[0.01-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
596	chr6_ssto_hap7	1530844	1530845	rs5875247	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	6p22.1	HCG17	rs5875247-C	0.465286	6E-14		0.017951211	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
596	chr6_ssto_hap7	1531277	1531278	rs3094137	29784950	Sawai H	2018-05-21	Sci Rep	Genome-wide association study identified new susceptible genetic variants in HLA class I region for hepatitis B virus-related hepatocellular carcinoma.	Hepatocellular carcinoma in hepatitis B infection	473 Japanese ancestry chronic hepatitis and hepatocellular carcinoma cases, 516 Japanese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma	153 Japanese ancestry chronic hepatitis and hepatocellular carcinoma cases, 614 Japanese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma, 94 Chinese ancestry chronic hepatitis and hepatocellular carcinoma cases, 187 Chinese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma, 185 Thai ancestry chronic hepatitis and hepatocellular carcinoma cases, 198 Thai ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma	6p22.1	HLA	rs3094137-?	NR	4E-7	(Japanese)	1.76	[1.41-2.19]	Affymetrix [447830]	N
596	chr6_ssto_hap7	1532975	1532976	rs885916	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	HCG17	rs885916-T	NR	1E-11		6.793	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
596	chr6_ssto_hap7	1538333	1538334	rs3129693	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p22.1	HCG17, TRIM26BP	rs3129693-T	NR	2E-9		0.0239683	[0.016-0.032] unit increase	Affymetrix [323123] (imputed)	N
596	chr6_ssto_hap7	1545377	1545378	rs9391803	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	6p22.1	TRIM26	rs9391803-T	0.852467	2E-19		0.0266262	[0.021-0.032] unit decrease	Affymetrix [NR] (imputed)	N
596	chr6_ssto_hap7	1547351	1547352	rs9261608	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6p22.1		rs9261608-T	0.858197	3E-8		0.0330532	[0.021-0.045] unit increase	NR [11722792] (imputed)	N
596	chr6_ssto_hap7	1553427	1553428	rs2189373	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	HCG17	rs2189373-T	NR	8E-10		0.0232455	[0.016-0.031] unit decrease	Affymetrix [323858] (imputed)	N
596	chr6_ssto_hap7	1553427	1553428	rs2189373	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	HCG17	rs2189373-T	NR	5E-9		5.835	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
596	chr6_ssto_hap7	1553512	1553513	rs2187980	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	6p22.1		rs2187980-A	0.855994	2E-8		0.0328244	[0.021-0.044] unit increase	NR [11722792] (imputed)	N
596	chr6_ssto_hap7	1554970	1554971	rs3094078	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	6p22.1	HCG17	rs3094078-?	NR	2E-15		0.0305	[0.024-0.037] unit decrease	Affymetrix [5701386] (imputed)	N
596	chr6_ssto_hap7	1554970	1554971	rs3094078	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA	6p22.1	NR	rs3094078-?	NR	8E-6		0.0526	[0.029-0.076] unit increase	Illumina [at least 560000] (imputed)	N
596	chr6_ssto_hap7	1557143	1557144	rs185780876	32185793	Yan J	2020-03-17	Clin Genet	A genome-wide association study identifies FSHR rs2300441 associated with follicle-stimulating hormone levels.	Luteinizing hormone levels in healthy women	720 Han Chinese ancestry individuals	NA	6p22.1	NR	rs185780876-?	NR	4E-7				Affymetrix [3101376] (imputed)	N
596	chr6_ssto_hap7	1559306	1559307	rs2428507	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	HLA-L, HCG17	rs2428507-A	NR	4E-9		5.893	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
596	chr6_ssto_hap7	1559922	1559923	rs2516703	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p22.1	HCG17	rs2516703-G	NR	1E-6		0.0184109	[0.011-0.026] unit decrease	Illumina [13520550] (imputed)	N
596	chr6_ssto_hap7	1559922	1559923	rs2516703	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	6p22.1	HCG17	rs2516703-G	NR	1E-10		0.0283809	[0.02-0.037] unit decrease	Illumina [13520550] (imputed)	N
596	chr6_ssto_hap7	1560522	1560522	rs201471471	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	6p22.1	NR	rs201471471-?	NR	3E-7		0.0808	[0.05-0.112] unit increase	Illumina [at least 560000] (imputed)	N
596	chr6_ssto_hap7	1562514	1562515	rs2516697	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p22.1	HCG17, HLA-L	rs2516697-A	NR	1E-8		0.0194794	[0.013-0.026] unit decrease	Affymetrix [321016] (imputed)	N
596	chr6_ssto_hap7	1571519	1571520	rs28894080	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p22.1	NR	rs28894080-?	NR	1E-8		0.1082	[0.071-0.145] unit increase	Illumina [at least 560000] (imputed)	N
597	chr6_ssto_hap7	1577689	1577692	rs141219707	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	6p22.1	HCG17, HLA-L	rs141219707-G	0.064428	9E-12		0.0670612	[0.059-0.075] unit increase	Affymetrix [93095623] (imputed)	N
597	chr6_ssto_hap7	1577690	1577692	rs368679067	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hashimoto thyroiditis	537 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	6p22.1		rs368679067-G	0.221880434	3E-13		0.64336747	[0.47-0.82] unit increase	Illumina [13428945] (imputed)	N
597	chr6_ssto_hap7	1586926	1586927	rs1264622	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	HCG17, HLA-L, HCG18	rs1264622-T	NR	2E-12		0.0273215	[0.02-0.035] unit decrease	Affymetrix [323858] (imputed)	N
597	chr6_ssto_hap7	1586926	1586927	rs1264622	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	HCG17, HLA-L, HCG18	rs1264622-T	NR	2E-11		0.0260716	[0.018-0.034] unit decrease	Affymetrix [127266] (imputed)	N
597	chr6_ssto_hap7	1586926	1586927	rs1264622	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6p22.1	HCG18	rs1264622-T	0.200945	1E-26		0.045548007	[0.037-0.054] unit decrease	Affymetrix [93095623] (imputed)	N
597	chr6_ssto_hap7	1586926	1586927	rs1264622	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p22.1	HLA-L, HCG17, HCG18	rs1264622-T	0.1901	2E-7		0.0455	[0.028-0.063] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
597	chr6_ssto_hap7	1586926	1586927	rs1264622	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	6p22.1	HCG18	rs1264622-T	0.2019	4E-13		0.03202955	[0.023-0.041] unit decrease	Affymetrix [~ 2500000] (imputed)	N
597	chr6_ssto_hap7	1603742	1603742	rs11380688	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p22.1	HCG17, HCG18	rs11380688-CT	0.2755	1E-9		0.0469	[0.032-0.062] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
597	chr6_ssto_hap7	1606359	1606360	rs139419536	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	6p22.1	HCG18	rs139419536-G	0.5266	1E-22		0.0193	[0.015-0.023] unit decrease	Affymetrix [18391927] (imputed)	N
597	chr6_ssto_hap7	1609049	1609050	rs1264587	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p22.1	HCG17, HCG18	rs1264587-G	NR	7E-10		0.0215064	[0.015-0.028] unit decrease	Affymetrix [319769] (imputed)	N
597	chr6_ssto_hap7	1609049	1609050	rs1264587	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p22.1	HCG17, HCG18	rs1264587-G	NR	5E-9		0.0203583	[0.014-0.027] unit decrease	Affymetrix [319769] (imputed)	N
597	chr6_ssto_hap7	1609049	1609050	rs1264587	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p22.1	HCG17, HCG18	rs1264587-G	NR	4E-8		0.0194219	[0.013-0.026] unit decrease	Affymetrix [321169] (imputed)	N
597	chr6_ssto_hap7	1611062	1611063	rs6926097	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mumps	31,227 European ancestry cases, 54,153 European ancestry controls	NA	6p22.1	NR	rs6926097-?	NR	2E-13		0.5671	[0.41-0.72] unit decrease	Illumina [at least 560000] (imputed)	N
597	chr6_ssto_hap7	1615096	1615097	rs9357097	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8 on CD39+ CD8+ T cell	2,915 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p22.1		rs9357097-T	0.47616	8E-12		0.1925	[0.14-0.25] unit increase	Illumina [17951463] (imputed)	N
597	chr6_ssto_hap7	1615625	1615626	rs1264585	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p22.1	NR	rs1264585-A	0.233	1E-13	(conditional)	1.206	[1.16-1.25]	Illumina [11270530] (imputed)	N
597	chr6_ssto_hap7	1618257	1618258	rs9261655	33563987	Tyrrell J	2021-02-09	Nat Commun	Genetic predictors of participation in optional components of UK Biobank.	Percentage of invited food questionnaires completed	300,639 European ancestry individuals	NA	6p22.1	NR	rs9261655-G	0.89	4E-9		0.86	[0.57-1.15] unit increase	Affymetrix [39302896] (imputed)	N
597	chr6_ssto_hap7	1620636	1620637	rs1264584	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	334,944 European ancestry, NR ancestry individuals	NA	6p22.1		rs1264584-?	NR	5E-8				Affymetrix [NR] (imputed)	N
597	chr6_ssto_hap7	1626045	1626046	rs1110464	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	6p22.1	TRIM39-RPP21	rs1110464-T	0.5706	3E-9		0.015407745	[0.01-0.021] unit decrease	Affymetrix [~ 11515000] (imputed)	N
597	chr6_ssto_hap7	1629222	1629223	rs3094067	25827949	Kunz M	2015-05-04	Exp Dermatol	Genome-wide association study identifies new susceptibility loci for cutaneous lupus erythematosus.	Cutaneous lupus erythematosus	151 European ancestry cases, 1,288 European ancestry controls	219 European ancestry cases, 262 European ancestry controls	6p22.1	TRIM39, RPP21	rs3094067-G	0.096	2E-11		2.32	[1.68-3.20]	Affymetrix [906600]	N
597	chr6_ssto_hap7	1632577	1632578	rs3778624	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	6p22.1	NR	rs3778624-?		7E-7	(MICA)			Illumina [NR]	N
597	chr6_ssto_hap7	1635930	1635931	rs9261659	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p22.1	NR	rs9261659-G	0.12	1E-10	(IFNAR2_of_CD20p)			Illumina [5084123] (imputed)	N
597	chr6_ssto_hap7	1635930	1635931	rs9261659	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p22.1	NR	rs9261659-?	NR	3E-13		0.1554	[0.11-0.2] unit decrease	Illumina [at least 560000] (imputed)	N
597	chr6_ssto_hap7	1643006	1643007	rs45626136	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p22.1	RPP21	rs45626136-C	0.939	1E-6		0.111	[0.066-0.156] unit increase	Affymetrix, Illumina [7374092] (imputed)	N
597	chr6_ssto_hap7	1643317	1643318	rs6986	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Anxiety	at least 23,606 European ancestry cases, at least 113,351 European ancestry controls	624,615 European ancestry cases, 1,310,854 European ancestry controls	6p22.1	TRIM39, RPP21	rs6986-G	0.2545	1E-12		0.018671134	[0.013-0.025] unit decrease	NR [9417325] (imputed)	N
597	chr6_ssto_hap7	1643317	1643318	rs6986	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	6p22.1	RPP21	rs6986-C	0.223335	7E-10		6.16	z score increase	NR [10847151] (imputed)	N
597	chr6_ssto_hap7	1643317	1643318	rs6986	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling guilty	373,380 European ancestry individuals	NA	6p22.1	TRIM39-RPP21	rs6986-C	0.223335	4E-13		7.25	z score increase	NR [10847151] (imputed)	N
597	chr6_ssto_hap7	1643317	1643318	rs6986	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	6p22.1	GNL1, HLA-E, PRR3, RPP21, TRIM10, TRIM15, TRIM26, TRIM31, TRIM39, TRIM39-RPP21, TRIM40	rs6986-C	0.22334	8E-9		5.76	z score increase	Illumina [18485882] (imputed)	N
597	chr6_ssto_hap7	1643317	1643318	rs6986	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	6p22.1	NR	rs6986-C	0.2277	5E-6	(Trans-16:1n-7, EA)	0.0079	[0.0046-0.0112] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
597	chr6_ssto_hap7	1651034	1651035	rs3132649	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	6p22.1	TRIM39-RPP21, HLA-E	rs3132649-G	NR	4E-7		0.152484	[0.093-0.211] unit increase	Illumina [at least 950000] (imputed)	N
597	chr6_ssto_hap7	1653954	1653954	rs9280949	31577861	Dai J	2019-10-31	Int J Cancer	Genome-wide association study of INDELs identified four novel susceptibility loci associated with lung cancer risk.	Lung cancer	20,871 European ancestry cases, 15,971 European ancestry controls, 2,331 Chinese ancestry cases, 3,077 Chinese ancestry controls	NA	6p22.1	RPP21	rs9280949-T	0.09	3E-10		1.16	[1.11-1.22]	Illumina [484196]	N
597	chr6_ssto_hap7	1655508	1655509	rs3130379	31272903	Sunadome H	2019-07-01	Allergol Int	Correlation between eosinophil count, its genetic background and body mass index: The Nagahama Study.	Eosinophil counts	4,650 East Asian ancestry individuals	NA	6p22.1	NR	rs3130379-T	0.11	2E-7		0.1677	NR unit increase	Illumina [103680] (imputed)	N
597	chr6_ssto_hap7	1655508	1655509	rs3130379	31272903	Sunadome H	2019-07-01	Allergol Int	Correlation between eosinophil count, its genetic background and body mass index: The Nagahama Study.	Eosinophil counts	4,206 East Asian ancestry individuals	NA	6p22.1	NR	rs3130379-T	0.11	4E-10		0.2134	NR unit increase	Illumina [103680] (imputed)	N
597	chr6_ssto_hap7	1656500	1656500	rs34500224	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	6p22.1	UBQLN1P1, HCG19P	rs34500224-CA	0.272902	2E-20		0.026657145	[0.021-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
597	chr6_ssto_hap7	1656505	1656505	rs202005918	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	95,717 East Asian ancestry individuals	NA	6p22.1		rs202005918-CA	0.233019	1E-8		0.0295853	[0.019-0.04] unit increase	Illumina [13471431] (imputed)	N
597	chr6_ssto_hap7	1657929	1657930	rs3094622	29899525	Klimentidis YC	2018-06-13	Int J Obes (Lond)	Genome-wide association study of habitual physical activity in over 377,000 UK Biobank participants identifies multiple variants including CADM2 and APOE.	Moderate to vigorous physical activity levels	377,234 European ancestry individuals	NA	6p22.1	RPP21	rs3094622-A	0.86	1E-9		0.02	unit increase	Affymetrix [11800000] (imputed)	N
597	chr6_ssto_hap7	1659160	1659161	rs116470386	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p22.1	NR	rs116470386-?	NR	5E-7		0.2768	[0.17-0.39] unit decrease	Illumina [at least 560000] (imputed)	N
597	chr6_ssto_hap7	1663470	1663471	rs3094054	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p22.1	NR	rs3094054-T	0.1132	1E-7	(EA)	0.056	[0.035-0.077] unit decrease	Illumina [~ 11800000] (imputed)	N
597	chr6_ssto_hap7	1665314	1665315	rs2057726	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	6p22.1		rs2057726-C	0.143	2E-91		0.31	[0.28-0.34] % increase	Affymetrix [NR] (imputed)	N
597	chr6_ssto_hap7	1669902	1669902	rs139568388	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p22.1	UBQLN1P1	rs139568388-CT	NR	2E-8		0.0220953	[0.014-0.03] unit decrease	Affymetrix [323858] (imputed)	N
597	chr6_ssto_hap7	1669902	1669902	rs139568388	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p22.1	UBQLN1P1	rs139568388-CT	NR	3E-8		0.0218212	[0.014-0.03] unit decrease	Affymetrix [127266] (imputed)	N
597	chr6_ssto_hap7	1672716	1672717	rs3129817	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p22.1	UBQLN1P1	rs3129817-A	NR	1E-9		0.0241213	[0.016-0.032] unit decrease	Affymetrix [319769] (imputed)	N
597	chr6_ssto_hap7	1672716	1672717	rs3129817	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p22.1	UBQLN1P1	rs3129817-A	NR	1E-8		0.0225242	[0.015-0.03] unit decrease	Affymetrix [319769] (imputed)	N
597	chr6_ssto_hap7	1672716	1672717	rs3129817	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p22.1	UBQLN1P1	rs3129817-A	NR	5E-8		0.0218736	[0.014-0.03] unit decrease	Affymetrix [321169] (imputed)	N
597	chr6_ssto_hap7	1672716	1672717	rs3129817	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Anxiety	at least 23,606 European ancestry cases, at least 113,351 European ancestry controls	624,615 European ancestry cases, 1,310,854 European ancestry controls	6p22.1	UBQLN1P1	rs3129817-G	0.1083	2E-48		0.052231386	[0.044-0.06] unit increase	NR [9417325] (imputed)	N
597	chr6_ssto_hap7	1672716	1672717	rs3129817	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	UBQLN1P1	rs3129817-A	NR	1E-8		5.695	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
597	chr6_ssto_hap7	1677285	1677286	rs970270	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Prostate cancer	10,792 European ancestry cases, 410,350 European ancestry controls	NA	6p22.1		rs970270-A	NR	3E-7		1.0985389	NR	Affymetrix [7846216] (imputed)	N
597	chr6_ssto_hap7	1677699	1677700	rs3132625	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Peripheral artery disease	7,114 European ancestry cases, 475,964 European ancestry controls, 4,112 East Asian ancestry cases, 173,601 East Asian ancestry controls	NA	6p22.1		rs3132625-G	NR	2E-8		0.165	[0.11-0.22] unit increase	Affymetrix, Illumina [25844651] (imputed)	N
597	chr6_ssto_hap7	1689677	1689678	rs2524204	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	6p22.1	intergenic	rs2524204-C	0.1322	6E-15		0.04113655	[0.031-0.051] unit decrease	Affymetrix [~ 2500000] (imputed)	N
597	chr6_ssto_hap7	1689677	1689678	rs2524204	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	6p22.1	intergenic	rs2524204-C	0.1322	7E-14		0.03948169	[0.029-0.05] unit decrease	Affymetrix [~ 2500000] (imputed)	N
597	chr6_ssto_hap7	1691338	1691339	rs9391683	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p22.1		rs9391683-G	0.689	2E-33				Affymetrix [10369434] (imputed)	N
597	chr6_ssto_hap7	1691403	1691404	rs2516686	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	6p22.1	intergenic	rs2516686-G	0.1322	1E-13		0.03934043	[0.029-0.05] unit decrease	Affymetrix [~ 2500000] (imputed)	N
597	chr6_ssto_hap7	1691403	1691404	rs2516686	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	6p22.1	intergenic	rs2516686-G	0.1322	6E-12		0.03638258	[0.026-0.047] unit decrease	Affymetrix [~ 2500000] (imputed)	N
597	chr6_ssto_hap7	1691787	1691788	rs9391684	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p22.1		rs9391684-G	0.688	7E-19				Affymetrix [10369434] (imputed)	N
597	chr6_ssto_hap7	1695428	1695429	rs3130116	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p22.1	NR	rs3130116-C	0.1391	6E-13		0.0124	[0.0091-0.0157] unit decrease	NR [7666894] (imputed)	N
597	chr6_ssto_hap7	1696991	1696992	rs1264565	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	6p22.1		rs1264565-T	0.618	8E-15		0.01	[0.008-0.012] unit increase	NR [NR] (imputed)	N
597	chr6_ssto_hap7	1703863	1703864	rs28780100	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p22.1	NR	rs28780100-?	NR	3E-9		0.1143	[0.077-0.152] unit increase	Illumina [at least 560000] (imputed)	N
598	chr6_ssto_hap7	1705862	1705863	rs34874107	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	6p22.1		rs34874107-C	0.182865	4E-10		0.019685585	[0.014-0.026] unit increase	Affymetrix [93095623] (imputed)	N
598	chr6_ssto_hap7	1710333	1710334	rs78860372	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lung cancer	4,444 East Asian ancestry cases, 174,282 East Asian ancestry controls	NA	6p22.1		rs78860372-T	0.236112602	5E-9		0.14972878	[0.099-0.2] unit increase	Illumina [13429980] (imputed)	N
598	chr6_ssto_hap7	1712134	1712135	rs1264544	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	334,944 European ancestry, NR ancestry individuals	NA	6p22.1		rs1264544-?	NR	5E-8				Affymetrix [NR] (imputed)	N
598	chr6_ssto_hap7	1712134	1712135	rs1264544	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	6p22.1		rs1264544-C	0.667	1E-12				Affymetrix [10369434] (imputed)	N
598	chr6_ssto_hap7	1715712	1715713	rs3094717	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p22.1	NR	rs3094717-?	NR	6E-7		0.0733	[0.044-0.102] unit decrease	Illumina [at least 560000] (imputed)	N
598	chr6_ssto_hap7	1717207	1717208	rs139215104	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mumps	31,227 European ancestry cases, 54,153 European ancestry controls	NA	6p22.1	NR	rs139215104-?	NR	6E-11		0.5908	[0.41-0.77] unit increase	Illumina [at least 560000] (imputed)	N
598	chr6_ssto_hap7	1720133	1720134	rs9261899	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	6p22.1	NR	rs9261899-?	NR	9E-33		11.926	NR z score increase	Illumina [at least 830937] (imputed)	N
598	chr6_ssto_hap7	1721925	1721926	rs3130127	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p22.1	MICC	rs3130127-A	NR	8E-10		6.154	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
598	chr6_ssto_hap7	1762137	1762138	rs3130141	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p22.1	RPP21, HLA-E	rs3130141-A	0.283	4E-23				Illumina [118177]	N
598	chr6_ssto_hap7	1773502	1773503	rs2516667	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p22.1	NR	rs2516667-?	NR	5E-10		0.0889	[0.061-0.117] unit decrease	Illumina [at least 560000] (imputed)	N
598	chr6_ssto_hap7	1773601	1773602	rs3132615	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p22.1	NR	rs3132615-T	0.1154	2E-6	(EA)	0.0507	[0.03-0.071] unit decrease	Illumina [~ 11800000] (imputed)	N
598	chr6_ssto_hap7	1785255	1785256	rs9380180	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p22.1	RANP1	rs9380180-A	NR	6E-9		0.0171541	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
598	chr6_ssto_hap7	1785255	1785256	rs9380180	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p22.1	RANP1	rs9380180-A	NR	1E-8		0.0168134	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
598	chr6_ssto_hap7	1787583	1787584	rs12207974	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (age of onset)	37,846 British ancestry individuals	NA	6p22.1	NR	rs12207974-C	0.776	9E-11		1.066	[0.74-1.39] unit decrease	Affymetrix [10894596] (imputed)	N
598	chr6_ssto_hap7	1787610	1787611	rs17875360	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	6p22.1	NR	rs17875360-?	NR	1E-6		0.0925	[0.055-0.13] unit increase	Illumina [at least 560000] (imputed)	N
598	chr6_ssto_hap7	1788209	1788210	rs1264459	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	6p22.1	HLA-E	rs1264459-A	0.826302	3E-10		0.019164842	[0.013-0.025] unit increase	Affymetrix [93095623] (imputed)	N
598	chr6_ssto_hap7	1790353	1790354	rs1264457	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	6p22.1	HLA-E	rs1264457-A	0.60324	8E-24		0.02398372	[0.019-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
598	chr6_ssto_hap7	1790353	1790354	rs1264457	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p22.1	HLA-E	rs1264457-G		4E-11		0.015	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
598	chr6_ssto_hap7	1801078	1801079	rs3131115	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder	29,475 European ancestry cases, 63,482 European ancestry controls	NA	6p21.33	NR	rs3131115-C	0.671942	1E-7		1.0845987	[1.05-1.12]	Affymetrix [7791636] (imputed)	N
598	chr6_ssto_hap7	1801078	1801079	rs3131115	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	6p21.33	HLA-E, GNL1	rs3131115-T	NR	2E-6		0.0966506	[0.057-0.136] unit decrease	Illumina [at least 950000] (imputed)	N
598	chr6_ssto_hap7	1803805	1803806	rs2429657	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.33		rs2429657-G	0.21809299999999998	2E-8		1.0286343	[1.02-1.04]	Affymetrix, Illumina [9851866] (imputed)	N
598	chr6_ssto_hap7	1812196	1812197	rs140668832	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs140668832-?		2E-9		1.07	[1.05-1.09]	Illumina [7645193] (imputed)	N
598	chr6_ssto_hap7	1812196	1812197	rs140668832	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs140668832-?		3E-10		1.92	[1.57-2.35]	Illumina [7645193] (imputed)	N
598	chr6_ssto_hap7	1814755	1814756	rs28894081	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p21.33	NR	rs28894081-A	0.0655	1E-7		0.0126	[0.0079-0.0173] unit increase	NR [7666894] (imputed)	N
598	chr6_ssto_hap7	1816313	1816314	rs10484552	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p21.33	NR	rs10484552-?	NR	8E-10		0.0986	[0.067-0.13] unit decrease	Illumina [at least 560000] (imputed)	N
598	chr6_ssto_hap7	1819584	1819585	rs143654430	30111768	Yao C	2018-08-15	Nat Commun	Genome-wide mapping of plasma protein QTLs identifies putatively causal genes and pathways for cardiovascular disease.	Blood protein levels	6861 European ancestry individuals	4298 European ancestry individuals	6p21.33		rs143654430-T	0.981	7E-18	(C2)	0.639	unit increase	Affymetrix, Illumina [8509364] (imputed)	N
598	chr6_ssto_hap7	1825313	1825314	rs139629463	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mumps	31,227 European ancestry cases, 54,153 European ancestry controls	NA	6p21.33	NR	rs139629463-?	NR	4E-6		0.3	[0.17-0.43] unit increase	Illumina [at least 560000] (imputed)	N
598	chr6_ssto_hap7	1826744	1826745	rs149608588	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p21.33	NR	rs149608588-?	NR	1E-6		0.2523	[0.15-0.36] unit decrease	Illumina [at least 560000] (imputed)	N
598	chr6_ssto_hap7	1827960	1827961	rs41265607	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.33		rs41265607-C	0.801	3E-28				Affymetrix [10369434] (imputed)	N
598	chr6_ssto_hap7	1827960	1827961	rs41265607	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs41265607-C	0.801	4E-34				Affymetrix [10369434] (imputed)	N
598	chr6_ssto_hap7	1828017	1828018	rs147537141	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	6p21.33		rs147537141-G	0.014219	2E-16		0.08431184	[0.064-0.104] unit increase	Affymetrix [93095623] (imputed)	N
599	chr6_ssto_hap7	1841232	1841233	rs3130117	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p21.33	NR	rs3130117-?	NR	2E-7		0.0742	[0.046-0.102] unit increase	Illumina [at least 560000] (imputed)	N
599	chr6_ssto_hap7	1843446	1843447	rs2524222	27479909	Hyde CL	2016-08-01	Nat Genet	Identification of 15 genetic loci associated with risk of major depression in individuals of European descent.	Major depressive disorder	84,847 European ancestry cases, 241,266 European ancestry controls	45,773 European ancestry cases, 106,354 European ancestry controls	6p21.33	GNL1	rs2524222-T	0.219809	1E-6		0.0335	[0.02-0.047] unit increase	Illumina [1220000] (imputed)	N
599	chr6_ssto_hap7	1860929	1860930	rs3130040	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	6p21.33	PRR3	rs3130040-T	NR	2E-8		0.0366187	[0.024-0.049] unit increase	Illumina [13520550] (imputed)	N
599	chr6_ssto_hap7	1869883	1869884	rs3132613	21900946	Nakabayashi K	2011-09-08	J Hum Genet	Identification of independent risk loci for Graves' disease within the MHC in the Japanese population.	Graves' disease	1,119 Japanese ancestry cases, 2,718 Japanese ancestry controls	432 Japanese ancestry cases, 1,157 Japanese ancestry controls	6p21.33	MHC	rs3132613-C	0.25	1E-13		1.43	[1.30-1.57]	Perlegen [268068]	N
599	chr6_ssto_hap7	1871482	1871483	rs4148247	26379185	Garcia-Etxebarria K	2015-09-17	PLoS One	No Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity.	Mild influenza (H1N1) infection	107 European ancestry mild cases, 549 European ancestry population controls	NA	6p21.33	GCN20, ABCF1	rs4148247-?	0.0167	1E-8		5.963	[5.27-6.66]	Affymetrix [547296]	N
599	chr6_ssto_hap7	1872229	1872230	rs2269710	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	IgM levels	14,442 Icelandic ancestry individuals	2,157 Swedish ancestry individuals	6p21.33	ABCF1	rs2269710-C	0.3579	3E-20		0.11	NR SD units increase	Illumina [21568490] (imputed)	N
599	chr6_ssto_hap7	1876681	1876682	rs3132610	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p21.33	NR	rs3132610-G	0.1198	1E-6	(EA)	0.0499	[0.03-0.07] unit decrease	Illumina [~ 11800000] (imputed)	N
599	chr6_ssto_hap7	1898131	1898132	rs9262120	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p21.33	ABCF1	rs9262120-A	NR	3E-8		5.562	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
599	chr6_ssto_hap7	1898684	1898685	rs3095276	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	6p21.33	NR	rs3095276-?	NR	5E-6		0.0784	[0.045-0.112] unit increase	Illumina [at least 560000] (imputed)	N
599	chr6_ssto_hap7	1903749	1903750	rs1264423	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.33		rs1264423-T	0.489	1E-18				Affymetrix [10369434] (imputed)	N
599	chr6_ssto_hap7	1903749	1903750	rs1264423	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	6p21.33	PPP1R10	rs1264423-C	0.5121	6E-16		0.02836222	[0.021-0.035] unit decrease	Affymetrix [~ 2500000] (imputed)	N
599	chr6_ssto_hap7	1906120	1906121	rs9262122	30169916	Sun Y	2018-08-31	J Eur Acad Dermatol Venereol	Investigation of the Predisposing Factor of Pemphigus and its clinical subtype through a Genome-wide association and next generation sequence analysis.	Pemphigus vulgaris	101 Chinese ancestry cases, 844 Chinese ancestry controls	at least 56 Chinese ancestry cases, up to 996 Chinese ancestry controls	6p21.33	NR	rs9262122-?	NR	5E-6	(adjusted for HLA-DRB1*14)	2.73		Illumina [5546030] (imputed)	N
599	chr6_ssto_hap7	1909059	1909060	rs1264419	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	6p21.33	NR	rs1264419-C	0.5128	9E-10		1.037	[1.03-1.05]	Affymetrix, Illumina [NR] (imputed)	N
599	chr6_ssto_hap7	1910613	1910614	rs2267637	33002439	Jin G	2020-10-01	Lancet Oncol	Genetic risk, incident gastric cancer, and healthy lifestyle: a meta-analysis of genome-wide association studies and prospective cohort study.	Gastric cancer	10,254 Han Chinese ancestry cases, 10,914 Han Chinese ancestry controls	NA	6p21.33	NR	rs2267637-T	0.31	3E-6		1.11	NR	Affymetrix, Illumina [6957974] (imputed)	N
599	chr6_ssto_hap7	1916411	1916412	rs55777621	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6p21.33	NR	rs55777621-?	NR	4E-12				Affymetrix [~ 8270000] (imputed)	N
599	chr6_ssto_hap7	1921664	1921665	rs111296996	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	6p21.33	MRPS18B	rs111296996-A	0.9872	5E-6		0.2039	[0.12-0.29] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
599	chr6_ssto_hap7	1925806	1925807	rs148828689	32599975	Bae JS	2020-06-30	Cancer Res Treat	Genome-Wide Association Study for the Identification of Novel Genetic Variants Associated with the Risk of Neuroblastoma in Korean Children.	Neuroblastoma (pediatric)	296 Korean ancestry child cases, 1,000 Korean ancestry adult controls	NA	6p21.33	MRPS18B	rs148828689-?		4E-18		7.8	[4.7-12.9]	Illumina [NR] (imputed)	N
599	chr6_ssto_hap7	1933511	1933512	rs12665339	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.33		rs12665339-A	0.85	3E-28				Affymetrix [10369434] (imputed)	N
599	chr6_ssto_hap7	1933511	1933512	rs12665339	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	6p21.33	ATAT1	rs12665339-G	0.17	6E-9		1.06	[1.04-1.08]	Illumina [20370935] (imputed)	N
599	chr6_ssto_hap7	1959518	1959519	rs1076829	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	DHX16	rs1076829-C	NR	4E-8		0.0176091	[0.011-0.024] unit decrease	Affymetrix [127266] (imputed)	N
599	chr6_ssto_hap7	1960555	1960556	rs1076828	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	DHX16	rs1076828-A	NR	2E-8		0.0180204	[0.012-0.024] unit decrease	Affymetrix [323858] (imputed)	N
599	chr6_ssto_hap7	1961260	1961261	rs74917683	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p21.33	NR	rs74917683-?	NR	2E-11		0.1491	[0.1-0.19] unit increase	Illumina [at least 560000] (imputed)	N
599	chr6_ssto_hap7	1965895	1965896	rs55740398	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	6p21.33		rs55740398-A	0.0027098	6E-6		0.29793	[0.17-0.43] unit increase	Affymetrix [15580782] (imputed)	N
600	chr6_ssto_hap7	1966178	1966179	rs3094097	31272903	Sunadome H	2019-07-01	Allergol Int	Correlation between eosinophil count, its genetic background and body mass index: The Nagahama Study.	Eosinophil counts	4,206 East Asian ancestry individuals	NA	6p21.33	NR	rs3094097-G	0.22	2E-9		0.1545	NR unit increase	Illumina [103680] (imputed)	N
600	chr6_ssto_hap7	1982329	1982330	rs9262142	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p21.33	NR	rs9262142-A	0.1166	3E-6	(EA)	0.0489	[0.028-0.069] unit decrease	Illumina [~ 11800000] (imputed)	N
600	chr6_ssto_hap7	1982621	1982622	rs2394392	31272903	Sunadome H	2019-07-01	Allergol Int	Correlation between eosinophil count, its genetic background and body mass index: The Nagahama Study.	Eosinophil counts	4,650 East Asian ancestry individuals	NA	6p21.33	NR	rs2394392-G	0.18	2E-8		0.1481	NR unit increase	Illumina [103680] (imputed)	N
600	chr6_ssto_hap7	1997830	1997831	rs149856401	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Stable angina pectoris	17,894 European ancestry cases, 325,132 European ancestry controls, 18,833 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	6p21.33		rs149856401-G	NR	1E-13		0.1724	[0.13-0.22] unit increase	Affymetrix, Illumina [20456336] (imputed)	N
600	chr6_ssto_hap7	1998752	1998754	rs147637345	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p21.33	NR	rs147637345-?	NR	1E-7		0.0819	[0.052-0.112] unit increase	Illumina [at least 560000] (imputed)	N
600	chr6_ssto_hap7	1998752	1998754	rs147637345	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	6p21.33	NR	rs147637345-?	NR	4E-6		0.0842	[0.048-0.12] unit decrease	Illumina [at least 560000] (imputed)	N
600	chr6_ssto_hap7	1998975	1998976	rs9468811	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs9468811-C	0.937946818961625	6E-7	(IGP19)	0.3471	[0.21-0.48] unit decrease	Illumina [~ 2500000] (imputed)	N
600	chr6_ssto_hap7	1998975	1998976	rs9468811	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs9468811-C	0.937725588025022	3E-6	(IGP74)	0.3262	[0.19-0.46] unit decrease	Illumina [~ 2500000] (imputed)	N
600	chr6_ssto_hap7	1998975	1998976	rs9468811	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs9468811-C	0.937641317877842	2E-6	(IGP75)	0.3304	[0.19-0.47] unit decrease	Illumina [~ 2500000] (imputed)	N
600	chr6_ssto_hap7	1998975	1998976	rs9468811	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs9468811-C	0.937418950958538	3E-6	(IGP69)	0.3228	[0.19-0.46] unit decrease	Illumina [~ 2500000] (imputed)	N
600	chr6_ssto_hap7	1998975	1998976	rs9468811	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs9468811-C	0.937308425901202	5E-7	(IGP76)	0.3469	[0.21-0.48] unit increase	Illumina [~ 2500000] (imputed)	N
600	chr6_ssto_hap7	2001574	2001575	rs115448006	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.33	NR	rs115448006-T	0.01	5E-11		0.599756	[0.42-0.78] unit increase	Affymetrix [up to 8900000] (imputed)	N
600	chr6_ssto_hap7	2011933	2011934	rs3094093	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs3094093-T	0.107712365538735	8E-6	(IGP65)	0.2214	[0.12-0.32] unit decrease	Illumina [~ 2500000] (imputed)	N
600	chr6_ssto_hap7	2011933	2011934	rs3094093	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs3094093-T	0.107418420152946	8E-6	(IGP2)	0.2231	[0.13-0.32] unit increase	Illumina [~ 2500000] (imputed)	N
600	chr6_ssto_hap7	2011933	2011934	rs3094093	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs3094093-T	0.107325880449438	3E-6	(IGP42)	0.2336	[0.14-0.33] unit increase	Illumina [~ 2500000] (imputed)	N
600	chr6_ssto_hap7	2017726	2017727	rs4713354	31272903	Sunadome H	2019-07-01	Allergol Int	Correlation between eosinophil count, its genetic background and body mass index: The Nagahama Study.	Eosinophil counts	4,650 East Asian ancestry individuals	NA	6p21.33	MDC1	rs4713354-C	0.216	2E-8		0.14	NR unit increase	Illumina [103680] (imputed)	N
600	chr6_ssto_hap7	2019778	2019779	rs117670375	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Gynecologic disease (multivariate analysis)	up to 7,975 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs117670375-?		1E-8	(uterine cervical cancer)			Illumina [7645193] (imputed)	N
600	chr6_ssto_hap7	2019778	2019779	rs117670375	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Gynecologic disease	7,975 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs117670375-?		1E-7		1.16	[1.10-1.22]	Illumina [7645193] (imputed)	N
600	chr6_ssto_hap7	2019778	2019779	rs117670375	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Gynecologic disease	7,315 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs117670375-?		2E-10				Illumina [7645193] (imputed)	N
600	chr6_ssto_hap7	2019778	2019779	rs117670375	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs117670375-?		2E-9		1.07	[1.05-1.09]	Illumina [7645193] (imputed)	N
600	chr6_ssto_hap7	2019778	2019779	rs117670375	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs117670375-?		3E-10		1.92	[1.57-2.35]	Illumina [7645193] (imputed)	N
600	chr6_ssto_hap7	2020733	2020734	rs3132584	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	TUBB	rs3132584-T	NR	1E-8		0.021321	[0.014-0.029] unit decrease	Affymetrix [323858] (imputed)	N
600	chr6_ssto_hap7	2020733	2020734	rs3132584	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	TUBB	rs3132584-T	NR	3E-8		0.0206734	[0.013-0.028] unit decrease	Affymetrix [127266] (imputed)	N
600	chr6_ssto_hap7	2020733	2020734	rs3132584	32989287	Cuellar-Partida G	2020-09-28	Nat Hum Behav	Genome-wide association study identifies 48 common genetic variants associated with handedness.	Left-handedness	1,766,671 European ancestry individuals	NA	6p21.33	TUBB	rs3132584-T	0.2056	6E-25		0.95483845	[NR]	Illumina [12493444] (imputed)	N
600	chr6_ssto_hap7	2025427	2025428	rs7781	33723403	Sha Z	2021-03-15	Nat Hum Behav	The genetic architecture of structural left-right asymmetry of the human brain.	Left-right brain asymmetry	32,256 European ancestry individuals	NA	6p21.33	TUBB	rs7781-G	0.24	2E-10				NR [9312144] (imputed)	N
600	chr6_ssto_hap7	2026680	2026681	rs3094128	31504236	Wiberg A	2019-09-05	Brain	Handedness, language areas and neuropsychiatric diseases: insights from brain imaging and genetics.	Handedness (non-right-handed vs right-handed)	44,631 European ancestry non-right-handed individuals, 356,567 European ancestry right-handed individuals	NA	6p21.33	TUBB, MICB, FLOT1	rs3094128-?	0.789	3E-8		1.0526316	[1.03-1.06]	NR [~ 11000000] (imputed)	N
600	chr6_ssto_hap7	2029753	2029754	rs3094127	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p21.33	FLOT1	rs3094127-A	NR	2E-8		5.644	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
600	chr6_ssto_hap7	2030847	2030848	rs1064627	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	FLOT1	rs1064627-G	NR	2E-8		0.0196765	[0.013-0.027] unit increase	Affymetrix [321016] (imputed)	N
600	chr6_ssto_hap7	2030847	2030848	rs1064627	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p21.33	NR	rs1064627-G	0.2	3E-13		1.15	[1.11-1.2]	Affymetrix [9886854] (imputed)	N
600	chr6_ssto_hap7	2030847	2030848	rs1064627	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p21.33	NR	rs1064627-G	0.2	1E-18			[NR]	Affymetrix [9886854] (imputed)	N
600	chr6_ssto_hap7	2030847	2030848	rs1064627	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p21.33	NR	rs1064627-G	0.2	2E-16		1.13	[1.1-1.16]	Affymetrix [9886854] (imputed)	N
600	chr6_ssto_hap7	2030847	2030848	rs1064627	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p21.33	NR	rs1064627-G	0.2	2E-17			[NR]	Affymetrix [9886854] (imputed)	N
600	chr6_ssto_hap7	2030847	2030848	rs1064627	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in non-current smokers	16,488 European ancestry cases, 169,688 European ancestry controls	NA	6p21.33	NR	rs1064627-G	0.2	2E-16		1.13	[1.1-1.16]	Affymetrix [9886854] (imputed)	N
600	chr6_ssto_hap7	2030847	2030848	rs1064627	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in never smokers	8,631 European ancestry cases, 120,544 European ancestry controls	NA	6p21.33	NR	rs1064627-G	0.2	1E-13		1.16	[1.11-1.2]	Affymetrix [9886854] (imputed)	N
600	chr6_ssto_hap7	2030847	2030848	rs1064627	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in ever smokers	12,446 European ancestry cases, 59,145 European ancestry controls	NA	6p21.33	NR	rs1064627-G	0.2	1E-7		1.1	[1.06-1.14]	Affymetrix [9886854] (imputed)	N
600	chr6_ssto_hap7	2045896	2045897	rs2284174	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	6p21.33	IER3	rs2284174-C	0.22	2E-21		1.12	[1.10-1.15]	Affymetrix, Illumina [6224355] (imputed)	N
600	chr6_ssto_hap7	2045896	2045897	rs2284174	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p21.33	NR	rs2284174-C	0.2189	1E-12		0.0102	[0.0075-0.0129] unit decrease	NR [7666894] (imputed)	N
600	chr6_ssto_hap7	2046124	2046125	rs3130662	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p21.33	IER3, DDR1	rs3130662-A	0.334	1E-25				Illumina [118177]	N
600	chr6_ssto_hap7	2049546	2049547	rs3129972	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of saturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	6p21.33		rs3129972-C	0.858209	1E-8		0.0336102	[0.022-0.045] unit decrease	NR [11722792] (imputed)	N
600	chr6_ssto_hap7	2050323	2050324	rs2535324	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	RN7SL353P	rs2535324-C	NR	2E-9		0.0198337	[0.013-0.026] unit decrease	Affymetrix [127266] (imputed)	N
600	chr6_ssto_hap7	2052599	2052600	rs28780111	30552173	Aterido A	2018-12-14	Ann Rheum Dis	Genetic variation at the glycosaminoglycan metabolism pathway contributes to the risk of psoriatic arthritis but not psoriasis.	Psoriatic arthritis	744 Spanish ancestry cases, 1,454 Spanish ancestry controls	1,430 cases, 1,417 controls	6p21.33	NR	rs28780111-?	NR	7E-11		6.51	[NR] z-score increase	Illumina [1387382] (imputed)	N
600	chr6_ssto_hap7	2090747	2090748	rs3131043	31089142	Law PJ	2019-05-14	Nat Commun	Association analyses identify 31 new risk loci for colorectal cancer susceptibility.	Colorectal cancer	31,197 European ancestry cases, 61,770 European ancestry controls	NA	6p21.33	NR	rs3131043-G	0.43	3E-8		1.07	[1.05-1.1]	Affymetrix, Illumina [> 10000000] (imputed)	N
600	chr6_ssto_hap7	2091138	2091139	rs3129981	31358989	Gelernter J	2019-07-29	Nat Neurosci	Genome-wide association study of post-traumatic stress disorder reexperiencing symptoms in >165,000 US veterans.	Post-traumatic stress disorder (re-experiencing symptoms)	146,660 European ancestry individuals, 19,983 African American individuals	117,900 European ancestry individuals	6p21.33	NR	rs3129981-?	NR	2E-7	(AA)	0.347197	[NR] unit increase	Affymetrix [49134253] (imputed)	N
600	chr6_ssto_hap7	2093853	2093854	rs3129984	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	6p21.33	NR	rs3129984-T	0.1179	8E-6	(EA)	0.0465	[0.026-0.067] unit decrease	Illumina [~ 11800000] (imputed)	N
600	chr6_ssto_hap7	2094373	2094374	rs3131057	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	6p21.33	HCG20, LINC00243	rs3131057-C	0.6028	8E-17		0.03073045	[0.024-0.038] unit decrease	Affymetrix [~ 2500000] (imputed)	N
600	chr6_ssto_hap7	2094414	2094415	rs11961980	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	6p21.33	HCG20, LINC00243	rs11961980-T	0.0038	2E-12		0.2133187	[0.15-0.27] unit decrease	Affymetrix [~ 2500000] (imputed)	N
600	chr6_ssto_hap7	2094414	2094415	rs11961980	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	6p21.33	HCG20, LINC00243	rs11961980-T	0.0038	1E-11		0.206328	[0.15-0.27] unit decrease	Affymetrix [~ 2500000] (imputed)	N
600	chr6_ssto_hap7	2095571	2095572	rs3131060	25827949	Kunz M	2015-05-04	Exp Dermatol	Genome-wide association study identifies new susceptibility loci for cutaneous lupus erythematosus.	Cutaneous lupus erythematosus	151 European ancestry cases, 1,288 European ancestry controls	219 European ancestry cases, 262 European ancestry controls	6p21.33	FLOT1	rs3131060-A	0.112	1E-13		2.3	[1.71-3.11]	Affymetrix [906600]	N
600	chr6_ssto_hap7	2096173	2096174	rs3131064	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p21.33	LINC00243	rs3131064-T	NR	2E-9		5.983	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
600	chr6_ssto_hap7	2096755	2096755	rs368739359	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	LINC00243	rs368739359-TAATG	NR	3E-8		0.0252092	[0.016-0.034] unit increase	Affymetrix [323123] (imputed)	N
601	chr6_ssto_hap7	2097849	2097850	rs1264376	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	LINC00243	rs1264376-A	NR	2E-13		0.0302583	[0.022-0.038] unit decrease	Affymetrix [323858] (imputed)	N
601	chr6_ssto_hap7	2097849	2097850	rs1264376	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	LINC00243	rs1264376-A	NR	3E-12		0.0288183	[0.021-0.037] unit decrease	Affymetrix [127266] (imputed)	N
601	chr6_ssto_hap7	2098165	2098166	rs10947096	29534301	Nishida N	2018-03-13	Hepatology	Key HLA-DRB1-DQB1 haplotypes and role of the BTNL2 gene for response to a hepatitis B vaccine.	Response to hepatitis B vaccine	107 Japanese ancestry low responder individuals, 351 Japanese ancestry intermediate responder individuals, 735 Japanese ancestry high responder individuals	NA	6p21.33	DDR1	rs10947096-?		2E-6		0.197	unit increase	Affymetrix [427664]	N
601	chr6_ssto_hap7	2098474	2098475	rs3129987	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Stable angina pectoris	18,833 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	6p21.33		rs3129987-C	0.884926231	3E-14		0.14236389	[0.11-0.18] unit decrease	Illumina [13427711] (imputed)	N
601	chr6_ssto_hap7	2098481	2098482	rs1264375	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	LINC00243	rs1264375-C	NR	1E-9		0.0209768	[0.014-0.028] unit decrease	Affymetrix [323858] (imputed)	N
601	chr6_ssto_hap7	2099215	2099216	rs4587207	25469926	Gottlieb DJ	2014-12-02	Mol Psychiatry	Novel loci associated with usual sleep duration: the CHARGE Consortium Genome-Wide Association Study.	Sleep duration	47,180 European ancestry individuals	4,771 African American individuals	6p21.33	FLOT1, LINC00243, IER3	rs4587207-G	0.20	2E-8	(EA)	3.14	[2.04-4.24] unit decrease	Affymetrix, Illumina [2033301]	N
601	chr6_ssto_hap7	2114274	2114275	rs886424	25936594	Tomer Y	2015-04-27	J Autoimmun	Genome wide identification of new genes and pathways in patients with both autoimmune thyroiditis and type 1 diabetes.	Type 1 diabetes and autoimmune thyroid diseases	346 European ancestry cases, 727 European ancestry controls	185 European ancestry cases, 340 European ancestry controls	6p21.33	IER3, DDR1	rs886424-A	NR	3E-14		2.2107		Illumina [514008]	N
601	chr6_ssto_hap7	2114274	2114275	rs886424	22688191	Bergen SE	2012-06-12	Mol Psychiatry	Genome-wide association study in a Swedish population yields support for greater CNV and MHC involvement in schizophrenia compared with bipolar disorder.	Bipolar disorder and schizophrenia	2,111 European ancestry schizophrenia cases, 836 European ancestry bipolar disorder cases, 2,535 European ancestry controls	NA	6p21.33	other genes, MHC	rs886424-?	NR	9E-7		1.37	[NR]	Affymetrix [745006]	N
601	chr6_ssto_hap7	2115626	2115627	rs9501489	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	LINC00243	rs9501489-A	NR	2E-10		0.0672114	[0.047-0.088] unit decrease	Affymetrix [321016] (imputed)	N
601	chr6_ssto_hap7	2115626	2115627	rs9501489	31235810	Fung K	2019-06-24	Sci Rep	Genome-wide association study identifies loci for arterial stiffness index in 127,121 UK Biobank participants.	Arterial stiffness index	127,121 European ancestry individuals	NA	6p21.33	DDR1	rs9501489-G	0.981	4E-6		0.067	[0.04-0.094] unit increase	Affymetrix [~ 10446505] (imputed)	N
601	chr6_ssto_hap7	2115871	2115872	rs142090224	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Chickenpox	107,769 European ancestry cases, 15,982 European ancestry controls	NA	6p21.33	NR	rs142090224-?	NR	3E-6		0.1169	[0.068-0.166] unit decrease	Illumina [at least 560000] (imputed)	N
601	chr6_ssto_hap7	2116417	2116418	rs1264355	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	6p21.33	NR	rs1264355-?	NR	2E-7		0.0847	[0.053-0.117] unit decrease	Illumina [at least 560000] (imputed)	N
601	chr6_ssto_hap7	2116568	2116569	rs574050376	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	LINC00243	rs574050376-T	NR	5E-9		0.082304	[0.055-0.11] unit decrease	Affymetrix [321016] (imputed)	N
601	chr6_ssto_hap7	2116568	2116569	rs574050376	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.33	NR	rs574050376-T	0.02613	2E-8	(AFMID)	0.0124	NR unit increase	Illumina [1671387] (imputed)	N
601	chr6_ssto_hap7	2119991	2119992	rs1264353	27659466	van der Harst P	2016-09-27	J Am Coll Cardiol	52 Genetic Loci Influencing Myocardial Mass.	QRS complex (Cornell)	up to 58,172 European ancestry individuals, up to 690 Orcadian (founder/genetic isolate) individuals	13,263 European ancestry individuals, 3,603 African American individuals, 4,619 Indian ancestry individuals	6p21.33	NR	rs1264353-?	NR	7E-6	(EA)			Affymetrix, Illumina, Perlegen [2766983] (imputed)	N
601	chr6_ssto_hap7	2123424	2123425	rs13208886	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p21.33	NR	rs13208886-?	NR	9E-12		0.1216	[0.087-0.156] unit decrease	Illumina [at least 560000] (imputed)	N
601	chr6_ssto_hap7	2124348	2124349	rs1264351	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	6p21.33	AK098012	rs1264351-C	0.1265	2E-8	(EA)	0.0032	[0.002-0.0044] unit decrease	Affymetrix [NR] (imputed)	N
601	chr6_ssto_hap7	2124348	2124349	rs1264351	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	6p21.33	AK098012	rs1264351-C	0.126	9E-10		0.0033	[0.0021-0.0045] unit decrease	Affymetrix [NR] (imputed)	N
601	chr6_ssto_hap7	2126575	2126576	rs4248151	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.33		rs4248151-T	0.722	2E-11				Affymetrix [10369434] (imputed)	N
601	chr6_ssto_hap7	2127400	2127401	rs7772131	22566498	Turner ST	2012-05-07	Hypertension	Genomic association analysis identifies multiple loci influencing antihypertensive response to an angiotensin II receptor blocker.	Response to angiotensin II receptor blocker therapy	198 European ancestry hypertensive individuals, 193 African American hypertensive individuals	NA	6p21.33	C6orf214	rs7772131-?	NR	3E-6	(AA)	6.73	[0.89-12.57] unit decrease	Affymetrix [~ 2300000] (imputed)	N
601	chr6_ssto_hap7	2128774	2128775	rs1264350	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	6p21.33	IER3, DDR1	rs1264350-T	NR	1E-7		0.151743	[0.096-0.208] unit increase	Illumina [at least 950000] (imputed)	N
601	chr6_ssto_hap7	2128888	2128889	rs1264349	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA	6p21.33	NR	rs1264349-?	NR	4E-6		0.0514	[0.03-0.073] unit decrease	Illumina [at least 560000] (imputed)	N
601	chr6_ssto_hap7	2130220	2130221	rs7749924	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs7749924-C	0.851598582628062	8E-6	(IGP32)	0.2204	[0.12-0.32] unit increase	Illumina [~ 2500000] (imputed)	N
601	chr6_ssto_hap7	2130504	2130505	rs78868683	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs78868683-?		3E-7		1.05	[1.03-1.08]	Illumina [7645193] (imputed)	N
601	chr6_ssto_hap7	2130504	2130505	rs78868683	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs78868683-?		1E-7		1.68	[1.39-2.04]	Illumina [7645193] (imputed)	N
601	chr6_ssto_hap7	2130552	2130553	rs3130646	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.33	Intergenic	rs3130646-G	NR	3E-6		0.0231949	[0.013-0.033] unit decrease	Illumina [13520550] (imputed)	N
601	chr6_ssto_hap7	2130925	2130926	rs1264347	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in diabetes	70,762 European ancestry individuals, 20,967 African American individuals	NA	6p21.33	AK098012	rs1264347-T	0.109	1E-12		1.01	[0.73-1.29] unit decrease	Affymetrix [NR] (imputed)	N
601	chr6_ssto_hap7	2130925	2130926	rs1264347	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.33	LINC00243	rs1264347-T	0.1326	5E-7		0.0552	[0.034-0.077] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
601	chr6_ssto_hap7	2131627	2131628	rs9501030	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	6p21.33	IER3, DDR1	rs9501030-A	0.16	4E-10		6.27	z-score increase	Affymetrix [4311822] (imputed)	N
601	chr6_ssto_hap7	2131627	2131628	rs9501030	20848476	Haritunians T	2010-11-01	Inflamm Bowel Dis	Genetic predictors of medically refractory ulcerative colitis.	Ulcerative colitis	324 European ancestry medically refractory ulcerative colitis cases, 537 European ancestry non-medically refractory ulcerative colitis cases, 2,601 European ancestry controls	NA	6p21.33	IER3, GTF2H4, FLOT1, VARS2, MIR588, DDR1	rs9501030-A	NR	4E-6	(Analysis II)			Illumina [313720]	N
602	chr6_ssto_hap7	2305095	2305096	rs1634718	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	MUC22, MUC21	rs1634718-G	0.2540161	7E-11	(EA, Complement C4)	0.3291	[0.23-0.43] unit decrease	Affymetrix [509946]	N
602	chr6_ssto_hap7	2305395	2305396	rs1634719	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs1634719-A	0.697	1E-33				Affymetrix [10369434] (imputed)	N
602	chr6_ssto_hap7	2308449	2308450	rs28360974	23551011	Zhao L	2013-04-02	Ann Hum Genet	Genome-wide association study of pre-eclampsia detects novel maternal single nucleotide polymorphisms and copy-number variants in subsets of the Hyperglycemia and Adverse Pregnancy Outcome (HAPO) study cohort.	Preeclampsia	21 Afro-Caribbean cases, 1,010 Afro-Caribbean controls, 50 European ancestry cases, 1,202 European ancestry controls, 62 Hispanic cases, 658 Hispanic controls	NA	6p21.33	MUC21	rs28360974-?	NR	3E-6	(Afro-Caribbean)	10.13	[3.85-26.67]	Illumina [2485249] (imputed)	N
602	chr6_ssto_hap7	2308579	2308580	rs149405105	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MUC22	rs149405105-A	NR	2E-8		0.0337227	[0.022-0.045] unit increase	Affymetrix [319769] (imputed)	N
602	chr6_ssto_hap7	2308579	2308580	rs149405105	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	MUC22	rs149405105-A	NR	1E-8		0.0343316	[0.023-0.046] unit increase	Affymetrix [319769] (imputed)	N
602	chr6_ssto_hap7	2308579	2308580	rs149405105	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.33	MUC22	rs149405105-A	NR	3E-10		0.0380088	[0.026-0.05] unit increase	Affymetrix [321114] (imputed)	N
602	chr6_ssto_hap7	2308579	2308580	rs149405105	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	MUC22	rs149405105-A	NR	2E-9		0.0364062	[0.025-0.048] unit increase	Affymetrix [321169] (imputed)	N
602	chr6_ssto_hap7	2314318	2314320	rs71757905	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Chickenpox	107,769 European ancestry cases, 15,982 European ancestry controls	NA	6p21.33	NR	rs71757905-?	NR	9E-6		0.1098	[0.062-0.158] unit increase	Illumina [at least 560000] (imputed)	N
602	chr6_ssto_hap7	2314771	2314772	rs9394026	29031612	Hirata J	2017-10-12	J Invest Dermatol	Variants at HLA-A, HLA-C, and HLA-DQB1 Confer Risk of Psoriasis Vulgaris in Japanese.	Psoriasis vulgaris	282 Japanese ancestry cases, 426 Japanese ancestry controls	320 Japanese ancestry cases, 1,622 Japanese ancestry controls	6p21.33	HLA	rs9394026-G	0.197	7E-15		1.86	[1.59-2.18]	Illumina [6369185] (imputed)	N
602	chr6_ssto_hap7	2316696	2316697	rs3869097	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.33		rs3869097-T	0.32183300000000004	2E-7		1.0237832	[1.01-1.03]	Affymetrix, Illumina [9851866] (imputed)	N
602	chr6_ssto_hap7	2318054	2318055	rs1634726	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental longevity (mother's age at death)	52,776 middle-aged British individuals	NA	6p21.33	NR	rs1634726-?	NR	6E-6		0.032105	[0.018-0.046] unit increase	Affymetrix [9658292] (imputed)	N
602	chr6_ssto_hap7	2320213	2320214	rs1632870	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MUC22	rs1632870-T	NR	5E-8		0.0227309	[0.015-0.031] unit increase	Affymetrix [323123] (imputed)	N
602	chr6_ssto_hap7	2321249	2321250	rs139141104	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 142,336 Japanese ancestry controls	NA	6p21.33	MUC22	rs139141104-?	NR	1E-18		0.16637	[0.13-0.2] unit increase	Illumina [19707525] (imputed)	N
602	chr6_ssto_hap7	2321920	2321921	rs114115115	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.33		rs114115115-T	0.937	4E-16				Affymetrix [10369434] (imputed)	N
602	chr6_ssto_hap7	2321920	2321921	rs114115115	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cervical cancer	6,563 European ancestry cases, 410,350 European ancestry controls	NA	6p21.33		rs114115115-T	NR	6E-13		1.3463	NR	Affymetrix [7846216] (imputed)	N
602	chr6_ssto_hap7	2322247	2322248	rs9380210	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.33		rs9380210-A	0.72	1E-24				Affymetrix [10369434] (imputed)	N
602	chr6_ssto_hap7	2322247	2322248	rs9380210	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.33		rs9380210-A	0.72	7E-16				Affymetrix [10369434] (imputed)	N
602	chr6_ssto_hap7	2322247	2322248	rs9380210	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p21.33		rs9380210-A	0.72	5E-18				Affymetrix [10369434] (imputed)	N
602	chr6_ssto_hap7	2322283	2322284	rs1634729	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	118,886 East Asian ancestry individuals	NA	6p21.33		rs1634729-C	0.950931	3E-9		0.0534033	[0.036-0.071] unit decrease	Illumina [13474352] (imputed)	N
602	chr6_ssto_hap7	2322283	2322284	rs1634729	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MUC22	rs1634729-T	NR	3E-9		0.0248876	[0.017-0.033] unit decrease	Affymetrix [319769] (imputed)	N
602	chr6_ssto_hap7	2322283	2322284	rs1634729	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	MUC22	rs1634729-T	NR	6E-9		0.0242344	[0.016-0.032] unit decrease	Affymetrix [319769] (imputed)	N
602	chr6_ssto_hap7	2322309	2322310	rs116071718	31066027	Nicoletti P	2019-05-07	Clin Pharmacol Ther	Shared genetic risk factors across carbamazepine-induced hypersensitivity reactions.	Carbamazepine-induced serious cutaneous adverse reaction	43 European ancestry cases, 10,701 European ancestry controls	NA	6p21.33	MUC22	rs116071718-?	NR	2E-6	(conditioned on rs192543598)	3.99	[2.25-7.05]	Illumina [5271349] (imputed)	N
602	chr6_ssto_hap7	2323003	2323004	rs9394030	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	MUC22	rs9394030-A	NR	7E-9		0.0193287	[0.013-0.026] unit increase	Affymetrix [321169] (imputed)	N
602	chr6_ssto_hap7	2324977	2324978	rs1632865	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.33		rs1632865-T	0.584	6E-30				Affymetrix [10369434] (imputed)	N
602	chr6_ssto_hap7	2325752	2325753	rs2517554	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.33		rs2517554-C	0.386	7E-33				Affymetrix [10369434] (imputed)	N
602	chr6_ssto_hap7	2326066	2326067	rs62399429	33531474	Burton CL	2021-02-02	Transl Psychiatry	Genome-wide association study of pediatric obsessive-compulsive traits: shared genetic risk between traits and disorder.	Obsessive-compulsive traits	5,018 European ancestry children and adolescents	NA	6p21.33	MUC22	rs62399429-?	NR	5E-6		0.131	[0.074-0.188] unit increase	Illumina [7870334] (imputed)	N
602	chr6_ssto_hap7	2327142	2327143	rs566731348	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.33	NR	rs566731348-A	0.951	4E-12		1.889	[1.71-2.07]	Illumina [11270530] (imputed)	N
602	chr6_ssto_hap7	2329945	2329946	rs9262549	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MUC22	rs9262549-G	NR	2E-14		0.0228763	[0.017-0.029] unit increase	Affymetrix [321016] (imputed)	N
602	chr6_ssto_hap7	2329945	2329946	rs9262549	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MUC22	rs9262549-G	NR	4E-18		0.0282059	[0.022-0.035] unit increase	Affymetrix [323123] (imputed)	N
602	chr6_ssto_hap7	2330567	2330568	rs12110481	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MUC22	rs12110481-T	NR	2E-14		0.0246712	[0.018-0.031] unit decrease	Affymetrix [323123] (imputed)	N
602	chr6_ssto_hap7	2333676	2333677	rs3909113	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Sutterella)	1,068 Japanese ancestry individuals	NA	6p21.33	MUC22	rs3909113-G	0.29	3E-6		0.03	[0.017-0.043] unit decrease	Illumina [6380737] (imputed)	N
602	chr6_ssto_hap7	2333751	2333752	rs10947124	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	MUC22	rs10947124-T	NR	2E-9		0.0181143	[0.012-0.024] unit increase	Affymetrix [321169] (imputed)	N
602	chr6_ssto_hap7	2333934	2333935	rs59356242	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LRPAP1	5,365 Icelandic ancestry individuals	NA	6p21.33		rs59356242-A	0.0137	2E-11		0.546071	[0.39-0.7] unit increase	Illumina [7506463] (imputed)	N
602	chr6_ssto_hap7	2334268	2334269	rs6933349	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6p21.33		rs6933349-?	NR	1E-8		0.926525	[0.9-0.95]	NR [685523]	N
602	chr6_ssto_hap7	2334356	2334357	rs7768644	26151496	Chen PL	2015-07-07	Nat Commun	Genetic determinants of antithyroid drug-induced agranulocytosis by human leukocyte antigen genotyping and genome-wide association study.	Thionamide-induced agranulocytosis in Graves' disease	21 East Asian ancestry cases with agranulocytosis, 662 East Asian ancestry cases without agranulocytosis	21 East Asian ancestry cases with agranulocytosis, 546 East Asian ancestry cases without agranulocytosis	6p21.33	HLA	rs7768644-A	0.091	3E-13	(trend)	5.01	[3.1-8.1] (allelic)	Affymetrix [522980]	N
602	chr6_ssto_hap7	2334598	2334599	rs28732081	30037793	Haapasalo K	2018-09-21	Infect Immun	The Psoriasis Risk Allele <i>HLA-C*06:02</i> Shows Evidence of Association with Chronic or Recurrent Streptococcal Tonsillitis.	Tonsillitis	95 Finnish cases, 504 Finnish controls	NA	6p21.33	HLA-C, HLA-B	rs28732081-?		6E-6		4.7		Illumina [100000]	N
602	chr6_ssto_hap7	2334707	2334708	rs3869098	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs3869098-A	0.528	2E-32				Affymetrix [10369434] (imputed)	N
602	chr6_ssto_hap7	2334707	2334708	rs3869098	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MUC22	rs3869098-G	NR	6E-19		0.0251596	[0.02-0.031] unit increase	Affymetrix [319769] (imputed)	N
602	chr6_ssto_hap7	2334707	2334708	rs3869098	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MUC22	rs3869098-G	NR	4E-11		0.0207579	[0.015-0.027] unit increase	Affymetrix [323858] (imputed)	N
602	chr6_ssto_hap7	2334707	2334708	rs3869098	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	MUC22	rs3869098-G	NR	6E-18		0.0244083	[0.019-0.03] unit increase	Affymetrix [319769] (imputed)	N
602	chr6_ssto_hap7	2334707	2334708	rs3869098	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	MUC22	rs3869098-G	NR	6E-10		0.0194883	[0.013-0.026] unit increase	Affymetrix [127266] (imputed)	N
602	chr6_ssto_hap7	2334707	2334708	rs3869098	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MUC22	rs3869098-G	NR	1E-13		0.0208831	[0.015-0.026] unit decrease	Affymetrix [321016] (imputed)	N
602	chr6_ssto_hap7	2334707	2334708	rs3869098	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MUC22	rs3869098-G	NR	3E-16		0.0252592	[0.019-0.031] unit decrease	Affymetrix [323123] (imputed)	N
602	chr6_ssto_hap7	2334707	2334708	rs3869098	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	MUC22	rs3869098-G	NR	2E-15		0.0228249	[0.017-0.028] unit increase	Affymetrix [321169] (imputed)	N
602	chr6_ssto_hap7	2334782	2334783	rs4248153	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MUC22	rs4248153-G	NR	3E-11		0.0193381	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
602	chr6_ssto_hap7	2334782	2334783	rs4248153	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	MUC22	rs4248153-G	NR	2E-10		0.018489	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
602	chr6_ssto_hap7	2334782	2334783	rs4248153	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MUC22	rs4248153-G	NR	2E-15		0.0230515	[0.017-0.029] unit decrease	Affymetrix [321016] (imputed)	N
602	chr6_ssto_hap7	2334871	2334872	rs4248154	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.33		rs4248154-C	0.831	5E-19				Affymetrix [10369434] (imputed)	N
602	chr6_ssto_hap7	2334871	2334872	rs4248154	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Prostate cancer	10,792 European ancestry cases, 410,350 European ancestry controls	NA	6p21.33		rs4248154-T	NR	4E-8		1.1076651	NR	Affymetrix [7846216] (imputed)	N
602	chr6_ssto_hap7	2334871	2334872	rs4248154	21900946	Nakabayashi K	2011-09-08	J Hum Genet	Identification of independent risk loci for Graves' disease within the MHC in the Japanese population.	Graves' disease	1,119 Japanese ancestry cases, 2,718 Japanese ancestry controls	432 Japanese ancestry cases, 1,157 Japanese ancestry controls	6p21.33	MHC	rs4248154-C	0.54	1E-13		1.38	[1.27-1.50]	Perlegen [268068]	N
602	chr6_ssto_hap7	2335723	2335724	rs34416364	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6p21.33	NR	rs34416364-G	0.90442	8E-9		1.0608954	[1.04-1.08]	Affymetrix [15688218] (imputed)	N
602	chr6_ssto_hap7	2335723	2335724	rs34416364	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	6p21.33	NR	rs34416364-?	NR	4E-6		0.0711	[0.041-0.101] unit decrease	Illumina [at least 560000] (imputed)	N
602	chr6_ssto_hap7	2337686	2337687	rs11753208	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	MUC22	rs11753208-T	0.08492462	2E-13	(EA, MHC class I polypeptide-related sequence A)	0.5826	[0.43-0.74] unit decrease	Affymetrix [509946]	N
602	chr6_ssto_hap7	2337718	2337719	rs9262555	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	6p21.33	NR	rs9262555-?	NR	6E-13		7.194	NR z score decrease	Illumina [at least 830937] (imputed)	N
602	chr6_ssto_hap7	2337744	2337745	rs141397370	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LRPAP1	5,361 Icelandic ancestry individuals	NA	6p21.33		rs141397370-T	0.01079	3E-25		0.911048	[0.74-1.08] unit increase	Illumina [7506463] (imputed)	N
602	chr6_ssto_hap7	2337980	2337981	rs2844670	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MUC22	rs2844670-G	NR	2E-9		0.0247626	[0.017-0.033] unit increase	Affymetrix [323123] (imputed)	N
602	chr6_ssto_hap7	2339109	2339110	rs2844665	21801394	Genin E	2011-07-29	Orphanet J Rare Dis	Genome-wide association study of Stevens-Johnson Syndrome and Toxic Epidermal Necrolysis in Europe.	Drug-induced Stevens-Johnson syndrome or toxic epidermal necrolysis (SJS/TEN)	424 European ancestry cases, 1,881 European ancestry controls	NA	6p21.33	C6orf205	rs2844665-C	0.62	3E-7		1.54	[1.30-1.82]	Illumina [268914]	N
602	chr6_ssto_hap7	2339248	2339249	rs9262558	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Osteoporosis	8,520 European ancestry cases, 479,981 European ancestry controls, 9,794 East Asian ancestry cases, 168,932 East Asian ancestry controls	NA	6p21.33		rs9262558-T	NR	3E-8		0.1429	[0.092-0.194] unit decrease	Affymetrix, Illumina [25844994] (imputed)	N
602	chr6_ssto_hap7	2339378	2339379	rs115730672	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Treatment or medication use - insulin product (UKB data field 20003_1140883066)	4,469 European ancestry cases, 451,807 European ancestry controls	NA	6p21.33		rs115730672-C	0.005712	3E-11		1.05	[0.74-1.36] unit increase	NR [11842647] (imputed)	N
602	chr6_ssto_hap7	2345254	2345255	rs116353863	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	6p21.33	MHC	rs116353863-C	0.0165	9E-9		1.2	[1.13-1.27]	Affymetrix, Illumina [16900397] (imputed)	N
602	chr6_ssto_hap7	2346981	2346981	rs770655224	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.33	MUC22	rs770655224-G	0.8871	4E-7		0.0673	[0.041-0.093] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
602	chr6_ssto_hap7	2347000	2347001	rs12528596	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	6p21.33	Intergenic	rs12528596-T	NR	1E-7		0.0242361	[0.015-0.033] unit decrease	Illumina [13519193] (imputed)	N
602	chr6_ssto_hap7	2347254	2347255	rs10456389	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MUC22	rs10456389-T	NR	2E-9		0.0238148	[0.016-0.032] unit decrease	Affymetrix [321016] (imputed)	N
602	chr6_ssto_hap7	2348336	2348337	rs17190106	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)(bidirectional)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.33		rs17190106-G	NR	2E-10				Affymetrix [7846216] (imputed)	N
602	chr6_ssto_hap7	2351165	2351166	rs73727186	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	6p21.33	HCG22, MUC22, MUC21, C6orf15, PSORS1C1, CDSN, PSORS1C2, CCHCR1, DPCR1, TCF19, POU5F1, SFTA2, VARS2, PSORS1C3, GTF2H4, DDR1, HCG27, MIR4640	rs73727186-?		6E-6	(heterogeneous)	0.235	[0.13-0.34] unit increase	Illumina [1492601] (imputed)	N
602	chr6_ssto_hap7	2351165	2351166	rs73727186	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	6p21.33	HCG22, MUC22, MUC21, C6orf15, PSORS1C1, CDSN, PSORS1C2, CCHCR1, DPCR1, TCF19, POU5F1, SFTA2, VARS2, PSORS1C3, GTF2H4, DDR1, HCG27, MIR4640	rs73727186-?		5E-6	(dominant)	0.233	[-0.43732-0.90332] unit increase	Illumina [1492601] (imputed)	N
602	chr6_ssto_hap7	2351954	2351955	rs2251830	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	6p21.33	HCG22	rs2251830-A	0.36	5E-22		0.053	[0.041-0.065] unit increase	Affymetrix, Illumina [2704730] (imputed)	N
602	chr6_ssto_hap7	2353384	2353385	rs2517532	22493691	Eriksson N	2012-04-06	PLoS One	Novel associations for hypothyroidism include known autoimmune risk loci.	Hypothyroidism	3,736 European ancestry cases, 35,546 European ancestry controls	NA	6p21.33	HLA-C, LOC729792, HCG22, C6orf15, DHFRP2, HCP5, HLA-B	rs2517532-G	0.597	1E-8		1.16	[1.10-1.22]	Illumina [870065]	N
602	chr6_ssto_hap7	2353523	2353524	rs2523864	25813999	Jeong S	2015-04-01	Invest Ophthalmol Vis Sci	Identification of a Novel Mucin Gene HCG22 Associated With Steroid-Induced Ocular Hypertension.	Change in intraocular pressure in response to steroid treatment (triamcinolone acetonide)	64 European ancestry individuals	49 European ancestry individuals	6p21.33	HCG22, HLA-A, HLA-B, MUC22	rs2523864-T	0.412	5E-9				Illumina [1545328]	N
602	chr6_ssto_hap7	2355250	2355251	rs9262602	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p21.33	NR	rs9262602-G	0.132	2E-8	(IFNAR2_of_CD20p)			Illumina [5084123] (imputed)	N
602	chr6_ssto_hap7	2355507	2355508	rs77203474	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Antisaccade task score	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	6p21.33	HCG22	rs77203474-A	NR	3E-6		0.1378235	[0.079-0.197] unit decrease	Illumina [> 6200000] (imputed)	N
602	chr6_ssto_hap7	2355913	2355914	rs4713428	26584805	Dorajoo R	2015-11-19	Genes Nutr	A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.	Plasma omega-3 polyunsaturated fatty acid level (eicosapentaenoic acid)	717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls	NA	6p21.33	NR	rs4713428-G	0.294	7E-6		0.0854	[0.048-0.123] unit decrease	Illumina [up to 1980188] (imputed)	N
602	chr6_ssto_hap7	2357139	2357140	rs2523855	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCG22	rs2523855-C	NR	2E-10		0.0207136	[0.014-0.027] unit decrease	Affymetrix [323123] (imputed)	N
602	chr6_ssto_hap7	2357811	2357812	rs2905757	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCG22	rs2905757-T	NR	5E-12		0.0207441	[0.015-0.027] unit increase	Affymetrix [319769] (imputed)	N
602	chr6_ssto_hap7	2357811	2357812	rs2905757	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HCG22	rs2905757-T	NR	3E-11		0.0199898	[0.014-0.026] unit increase	Affymetrix [319769] (imputed)	N
602	chr6_ssto_hap7	2357811	2357812	rs2905757	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCG22	rs2905757-T	NR	3E-8		0.0166947	[0.011-0.023] unit decrease	Affymetrix [321016] (imputed)	N
603	chr6_ssto_hap7	2359573	2359574	rs9262631	26151496	Chen PL	2015-07-07	Nat Commun	Genetic determinants of antithyroid drug-induced agranulocytosis by human leukocyte antigen genotyping and genome-wide association study.	Thionamide-induced agranulocytosis in Graves' disease	21 East Asian ancestry cases with agranulocytosis, 662 East Asian ancestry cases without agranulocytosis	21 East Asian ancestry cases with agranulocytosis, 546 East Asian ancestry cases without agranulocytosis	6p21.33	HLA	rs9262631-A	0.063	6E-19	(trend)	7.09	[4.32-11.63] (allelic)	Affymetrix [522980]	N
603	chr6_ssto_hap7	2359780	2359781	rs9262632	21051598	Pereyra F	2010-11-04	Science	The major genetic determinants of HIV-1 control affect HLA class I peptide presentation.	HIV-1 control	516 European cases, 1,196 European controls, 341 African American cases, 892 African American controls, 117 Hispanic cases, 560 Hispanic controls	NA	6p21.33	intergenic	rs9262632-G	0.10	1E-8	(AA)	3.1	[NR]	Illumina [1384048] (imputed)	N
603	chr6_ssto_hap7	2361208	2361209	rs76541615	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	6p21.33	MHC-region	rs76541615-T	0.796	1E-17		1.08	[1.06-1.09]	Affymetrix, Illumina [11800000] (imputed)	N
603	chr6_ssto_hap7	2362307	2362308	rs2517521	32589924	Bi W	2020-06-23	Am J Hum Genet	A Fast and Accurate Method for Genome-Wide Time-to-Event Data Analysis and Its Application to UK Biobank.	Hyperlipidemia (time to event)	35,623 British ancestry cases, 247,248 British ancestry controls	NA	6p21.33	HCG22	rs2517521-?	NR	3E-8				NR [~ 24000000] (imputed)	N
603	chr6_ssto_hap7	2362307	2362308	rs2517521	32589924	Bi W	2020-06-23	Am J Hum Genet	A Fast and Accurate Method for Genome-Wide Time-to-Event Data Analysis and Its Application to UK Biobank.	Essential hypertension (time to event)	76,566 British ancestry cases, 206,305 British ancestry controls	NA	6p21.33	HCG2248	rs2517521-?	NR	4E-8				NR [~ 24000000] (imputed)	N
603	chr6_ssto_hap7	2362539	2362540	rs78725346	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.33	NR	rs78725346-A	0.01045	3E-8	(CKB)	0.03173	NR unit increase	Illumina [1671387] (imputed)	N
603	chr6_ssto_hap7	2364250	2364251	rs2523842	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCG22	rs2523842-A	NR	2E-9		0.0493584	[0.033-0.066] unit decrease	Affymetrix [321016] (imputed)	N
603	chr6_ssto_hap7	2364423	2364424	rs9262651	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HCG22	rs9262651-T	NR	3E-11		0.0220473	[0.016-0.029] unit increase	Affymetrix [321169] (imputed)	N
603	chr6_ssto_hap7	2365090	2365091	rs2517510	21738480	Nalls MA	2011-07-01	PLoS Genet	Multiple loci are associated with white blood cell phenotypes.	White blood cell count	19,509 European ancestry individuals	11,823 European ancestry individuals	6p21.33	PSORS1C1, MUC21, HCG22, C6orf15, CCHCR1, CDSN, PSORS1C2	rs2517510-T		4E-13	(WBC)	0.0129	[0.0094-0.0164] unit decrease	Affymetrix, Illumina [> 2400000] (imputed)	N
603	chr6_ssto_hap7	2368608	2368609	rs149917912	33841421	Li J	2021-03-25	Front Immunol	Variants at the MHC Region Associate With Susceptibility to <i>Clostridioides difficile</i> Infection: A Genome-Wide Association Study Using Comprehensive Electronic Health Records.	Clostridioides difficle infection	1,160 European ancestry cases, 14,144 European ancestry controls	NA	6p21.33	NR	rs149917912-C	0.0242	5E-6		1.67	[1.37-2]	Illumina [64973696] (imputed)	N
603	chr6_ssto_hap7	2369296	2369297	rs75056122	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.33	NR	rs75056122-T	0.01045	3E-8	(CKB)	0.03173	NR unit increase	Illumina [1671387] (imputed)	N
603	chr6_ssto_hap7	2369560	2369561	rs3094089	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCG22	rs3094089-C	NR	1E-9		0.021023	[0.014-0.028] unit decrease	Affymetrix [323858] (imputed)	N
603	chr6_ssto_hap7	2369560	2369561	rs3094089	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HCG22	rs3094089-C	NR	7E-9		0.0200851	[0.013-0.027] unit decrease	Affymetrix [127266] (imputed)	N
603	chr6_ssto_hap7	2370156	2370157	rs3132567	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HCG22	rs3132567-T	NR	3E-8		0.0202317	[0.013-0.027] unit decrease	Affymetrix [319769] (imputed)	N
603	chr6_ssto_hap7	2370517	2370518	rs192064582	32141793	Garman L	2020-03-06	Ocul Immunol Inflamm	Genome-Wide Association Study of Ocular Sarcoidosis Confirms HLA Associations and Implicates Barrier Function and Autoimmunity in African Americans.	Ocular sarcoidosis	260 African American cases, 1,551 African American controls	NA	6p21.33	NR	rs192064582-T	NR	8E-6		1.747	[1.37-2.23]	Illumina [13976150] (imputed)	N
603	chr6_ssto_hap7	2370537	2370538	rs184099286	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	QRS duration	3,274 African American individuals, 13,420 Hispanic/Latino individuals, 126 Asian ancestry individuals, 226 Native American ancestry individuals	NA	6p21.33	HCG22	rs184099286-?	NR	5E-9	(Hispanic/Latino)	1.17582	[0.78-1.57] unit decrease	Illumina [26566045] (imputed)	N
603	chr6_ssto_hap7	2375628	2375628	rs145214406	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.33	NR	rs145214406-CAA	0.012	1E-12		0.593265	[0.43-0.76] unit increase	Affymetrix [up to 8900000] (imputed)	N
603	chr6_ssto_hap7	2378905	2378906	rs2517481	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Growth differentiation factor-15 levels	21,758 European ancestry individuals	9,173 individuals	6p21.33		rs2517481-C	0.41	3E-9		0.0481	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
603	chr6_ssto_hap7	2381486	2381487	rs2517474	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small LDL	115,082 European ancestry individuals	NA	6p21.33		rs2517474-G	0.542926	2E-8		0.023198	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
603	chr6_ssto_hap7	2381486	2381487	rs2517474	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium LDL	115,082 European ancestry individuals	NA	6p21.33		rs2517474-G	0.542926	1E-9		0.0250618	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
603	chr6_ssto_hap7	2381486	2381487	rs2517474	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium LDL	115,082 European ancestry individuals	NA	6p21.33		rs2517474-G	0.542926	7E-9		0.0240182	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
603	chr6_ssto_hap7	2381486	2381487	rs2517474	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small LDL	115,082 European ancestry individuals	NA	6p21.33		rs2517474-G	0.542926	3E-8		0.0228734	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
603	chr6_ssto_hap7	2381486	2381487	rs2517474	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	6p21.33		rs2517474-G	0.542926	2E-9		0.0247017	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
603	chr6_ssto_hap7	2381486	2381487	rs2517474	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	RNU6-1133P	rs2517474-A	NR	8E-10		0.0173534	[0.012-0.023] unit increase	Affymetrix [319769] (imputed)	N
603	chr6_ssto_hap7	2381486	2381487	rs2517474	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	RNU6-1133P	rs2517474-A	NR	9E-9		0.0162462	[0.011-0.022] unit increase	Affymetrix [319769] (imputed)	N
603	chr6_ssto_hap7	2381486	2381487	rs2517474	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	RNU6-1133P	rs2517474-A	NR	7E-9		0.0163369	[0.011-0.022] unit decrease	Affymetrix [321016] (imputed)	N
603	chr6_ssto_hap7	2381486	2381487	rs2517474	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	RNU6-1133P	rs2517474-A	NR	3E-9		0.0169233	[0.011-0.023] unit increase	Affymetrix [321169] (imputed)	N
603	chr6_ssto_hap7	2385358	2385359	rs9263475	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4 on CD39+ secreting CD4 regulatory T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs9263475-G	0.51353	1E-12		0.2076	[0.15-0.26] unit increase	Illumina [17954496] (imputed)	N
603	chr6_ssto_hap7	2385358	2385359	rs9263475	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.33	Intergenic	rs9263475-G	NR	6E-9	(women)	0.0308596	[0.02-0.041] unit decrease	Illumina [13520550] (imputed)	N
603	chr6_ssto_hap7	2385358	2385359	rs9263475	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.33	Intergenic	rs9263475-G	NR	2E-9		0.0221293	[0.015-0.029] unit decrease	Illumina [13520550] (imputed)	N
603	chr6_ssto_hap7	2387643	2387644	rs28732092	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p21.33	NR	rs28732092-T	0.0787	5E-7		0.011	[0.0067-0.0153] unit increase	NR [7666894] (imputed)	N
603	chr6_ssto_hap7	2388749	2388750	rs2535307	28132517	Xie W	2017-01-28	AIDS Res Hum Retroviruses	Genome-Wide Analyses Reveal Gene Influence on HIV Disease Progression and HIV-1C Acquisition in Southern Africa.	HIV progression (CD4 and viral load)	556 Motswana ancestry cases	NA	6p21.33	HCG22	rs2535307-C	0.48	4E-7				Illumina [NR]	N
603	chr6_ssto_hap7	2389389	2389390	rs2535305	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	RNU6-1133P	rs2535305-G	NR	8E-10		0.0178493	[0.012-0.024] unit increase	Affymetrix [321169] (imputed)	N
603	chr6_ssto_hap7	2390026	2390027	rs12527394	29534301	Nishida N	2018-03-13	Hepatology	Key HLA-DRB1-DQB1 haplotypes and role of the BTNL2 gene for response to a hepatitis B vaccine.	Response to hepatitis B vaccine	107 Japanese ancestry low responder individuals, 351 Japanese ancestry intermediate responder individuals, 735 Japanese ancestry high responder individuals	NA	6p21.33	C6orf15	rs12527394-?		5E-8		0.174	unit decrease	Affymetrix [427664]	N
603	chr6_ssto_hap7	2393168	2393169	rs4947296	31050781	Zhao SX	2019-05-03	JAMA Netw Open	Assessment of Molecular Subtypes in Thyrotoxic Periodic Paralysis and Graves Disease Among Chinese Han Adults: A Population-Based Genome-Wide Association Study.	Thyrotoxic hypokalemic periodic paralysis and Graves disease	171 Han Chinese ancestry cases, 2,160 Han Chinese ancestry controls	362 Han Chinese ancestry cases, 1,089 Han Chinese ancestry controls	6p21.33	C6orf15	rs4947296-?	0.14	3E-22		2.06	[1.77-2.39]	Illumina [2752055] (imputed)	N
603	chr6_ssto_hap7	2393168	2393169	rs4947296	23001997	Hou S	2012-12-06	Arthritis Rheum	Identification of a susceptibility locus in STAT4 for Behcet's disease in Han Chinese in a genome-wide association study.	Behcet's disease	147 Han Chinese ancestry cases, 951 Han Chinese ancestry controls	554 Han Chinese ancestry cases, 1,159 Han Chinese ancestry controls	6p21.33	HCG22	rs4947296-?	NR	1E-11		2.57	[1.96-3.37]	Affymetrix [661736]	N
603	chr6_ssto_hap7	2393168	2393169	rs4947296	21841780	Chu X	2011-08-14	Nat Genet	A genome-wide association study identifies two new risk loci for Graves' disease.	Graves' disease	1,468 Chinese ancestry cases, 1,490 Chinese ancestry controls	3,994 Chinese ancestry cases, 3,510 Chinese ancestry controls	6p21.33	MUC21, C6orf15	rs4947296-C	0.14	4E-51		1.77	[1.65-1.91]	Illumina [486049]	N
603	chr6_ssto_hap7	2393330	2393331	rs3130544	23263863	Li J	2012-12-20	Hum Mol Genet	GWAS of blood cell traits identifies novel associated loci and epistatic interactions in Caucasian and African-American children.	Hematology traits	7,943 African American children, 6,234 European ancestry children	NA	6p21.33	PSORS1C1, MUC21, HCG22, C6orf15, CCHCR1, CDSN, PSORS1C2	rs3130544-A	NR	5E-7	(WBC)	0.0189	[0.011-0.026] unit decrease	Illumina [544917]	N
603	chr6_ssto_hap7	2393330	2393331	rs3130544	23055271	Gregersen PK	2012-07-16	Ann Neurol	Risk for myasthenia gravis maps to a (151) Pro->Ala change in TNIP1 and to human leukocyte antigen-B*08.	Myasthenia gravis	400 European ancestry cases, 5,505 European ancestry controls	249 European ancestry cases, 3,415 European ancestry controls	6p21.33	NR	rs3130544-A	0.13	2E-90		5.64	[4.77-6.67]	Illumina [274256]	N
603	chr6_ssto_hap7	2393330	2393331	rs3130544	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.33	intergenic	rs3130544-A	0.1238	9E-58		3.34	[NR]	Illumina [242824]	N
603	chr6_ssto_hap7	2394452	2394453	rs2535298	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p21.33	NR	rs2535298-?	NR	1E-6		0.0761	[0.046-0.107] unit increase	Illumina [at least 560000] (imputed)	N
603	chr6_ssto_hap7	2395209	2395210	rs2535296	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p21.33	NR	rs2535296-?	NR	3E-12		0.0858	[0.062-0.11] unit decrease	Illumina [at least 560000] (imputed)	N
603	chr6_ssto_hap7	2396556	2396557	rs3094087	33227023	Wang Y	2020-11-23	PLoS Genet	Genome-wide association study identifies 16 genomic regions associated with circulating cytokines at birth.	IgA levels	8,318 European ancestry individuals	NA	6p21.33	HLA	rs3094087-T	0.15	2E-10		0.1	[0.080-0.120] unit increase	Illumina [~ 9000000] (imputed)	N
603	chr6_ssto_hap7	2398424	2398425	rs3130967	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	RNU6-1133P	rs3130967-T	NR	2E-9		0.0334393	[0.023-0.044] unit increase	Affymetrix [323123] (imputed)	N
603	chr6_ssto_hap7	2400050	2400051	rs146508039	33841421	Li J	2021-03-25	Front Immunol	Variants at the MHC Region Associate With Susceptibility to <i>Clostridioides difficile</i> Infection: A Genome-Wide Association Study Using Comprehensive Electronic Health Records.	Clostridioides difficle infection in antibiotics-users	587 European ancestry cases, 3,166 European ancestry controls	NA	6p21.33	NR	rs146508039-T	0.025	5E-7		2.24	[1.7-2.88]	Illumina [64973696] (imputed)	N
603	chr6_ssto_hap7	2400084	2400085	rs3130968	34601942	van Zuydam NR	2021-10-04	Circ Genom Precis Med	Genome-Wide Association Study of Peripheral Artery Disease.	Peripheral artery disease	12,086 European ancestry cases, 449,548 European ancestry controls	31,307 cases, 211,753 controls, 3,164 East Asian ancestry cases, 20,134 East Asian ancestry controls	6p21.33		rs3130968-T	0.19	3E-12		1.07	[1.05-1.09]	Affymetrix, Illumina [NR] (imputed)	N
603	chr6_ssto_hap7	2400084	2400085	rs3130968	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	C6orf15	rs3130968-T	NR	4E-9		0.0219861	[0.015-0.029] unit decrease	Affymetrix [319769] (imputed)	N
603	chr6_ssto_hap7	2400084	2400085	rs3130968	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	C6orf15	rs3130968-T	NR	4E-8		0.0204516	[0.013-0.028] unit decrease	Affymetrix [319769] (imputed)	N
603	chr6_ssto_hap7	2400084	2400085	rs3130968	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	C6orf15	rs3130968-T	NR	7E-9		0.0218317	[0.014-0.029] unit decrease	Affymetrix [321169] (imputed)	N
603	chr6_ssto_hap7	2400084	2400085	rs3130968	31285632	Klarin D	2019-07-08	Nat Med	Genome-wide association study of peripheral artery disease in the Million Veteran Program.	Peripheral artery disease	24,009 European ancestry cases, 150,983 European ancestry controls, 5,373 African ancestry cases, 42,485 African ancestry controls, 1,925 Hispanic cases, 18,285 Hispanic controls	5,117 European ancestry cases, 389,291 European ancestry controls	6p21.33	HLA-B	rs3130968-T	0.1371	3E-10		1.07	[1.05-1.10]	Affymetrix [at least 20323458] (imputed)	N
603	chr6_ssto_hap7	2400130	2400131	rs149396823	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	6p21.33		rs149396823-A	0.00992199999999999	1E-11		0.07646505	[0.054-0.099] unit increase	Affymetrix [93095623] (imputed)	N
603	chr6_ssto_hap7	2401651	2401652	rs144846110	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p21.33	C6orf15	rs144846110-G	NR	1E-10		0.0272233	[0.019-0.036] unit decrease	Affymetrix [323858] (imputed)	N
603	chr6_ssto_hap7	2402278	2402279	rs9263523	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Prostate cancer	11,599 European ancestry cases, 199,628 European ancestry controls, 5,672 East Asian ancestry cases, 84,660 East Asian ancestry controls	NA	6p21.33		rs9263523-T	NR	1E-10		0.0949	[0.066-0.124] unit decrease	Affymetrix, Illumina [25775424] (imputed)	N
603	chr6_ssto_hap7	2402564	2402565	rs4371876	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4 on HLA DR+ CD4+ T cell	3,060 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs4371876-A	0.51058	2E-10		0.1831	[0.13-0.24] unit increase	Illumina [18012714] (imputed)	N
603	chr6_ssto_hap7	2403007	2403007	rs200788140	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4 on activated CD4 regulatory T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs200788140-AT	0.35258	7E-11		0.2109	[0.15-0.27] unit increase	Illumina [17954496] (imputed)	N
603	chr6_ssto_hap7	2403007	2403007	rs200788140	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4 on CD39+ activated CD4 regulatory T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs200788140-AT	0.35258	8E-15		0.2502	[0.19-0.31] unit increase	Illumina [17954496] (imputed)	N
603	chr6_ssto_hap7	2404540	2404541	rs9263567	21844884	Wheeler HE	2011-08-16	Pharmacogenomics J	Genome-wide meta-analysis identifies variants associated with platinating agent susceptibility across populations.	Response to platinum-based chemotherapy (cisplatin)	176 Sub-Saharan African ancestry lymphoblastoid cell lines, 83 African ancestry lymphoblastoid cell lines, 175 East Asian ancestry lymphoblastoid cell lines, 174 European ancestry lymphoblastoid cell lines	NA	6p21.33	intergenic	rs9263567-?		5E-6				NR [~ 3000000] (imputed)	N
603	chr6_ssto_hap7	2404540	2404541	rs9263567	21844884	Wheeler HE	2011-08-16	Pharmacogenomics J	Genome-wide meta-analysis identifies variants associated with platinating agent susceptibility across populations.	Response to platinum-based chemotherapy (carboplatin)	176 Sub-Saharan African ancestry lymphoblastoid cell lines, 83 African ancestry lymphoblastoid cell lines, 175 East Asian ancestry lymphoblastoid cell lines, 174 European ancestry lymphoblastoid cell lines	NA	6p21.33	intergenic	rs9263567-?		2E-6				NR [~ 3000000] (imputed)	N
603	chr6_ssto_hap7	2408018	2408019	rs9263622	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.33		rs9263622-T	0.603	5E-29				Affymetrix [10369434] (imputed)	N
603	chr6_ssto_hap7	2408962	2408963	rs6457327	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Prostate cancer	7,438 White British ancestry cases, 118,206 White British ancestry controls	NA	6p21.33		rs6457327-?	NR	5E-8		1.1003	[1.07-1.13]	NR [680312]	N
603	chr6_ssto_hap7	2408962	2408963	rs6457327	20639881	Conde L	2010-07-18	Nat Genet	Genome-wide association study of follicular lymphoma identifies a risk locus at 6p21.32.	Follicular lymphoma	681 European ancestry cases, 750 European ancestry controls	up to 3,164 European ancestry cases, 6,208 European ancestry controls	6p21.33	C6orf15	rs6457327-C	0.56	7E-6	(FL)	1.47	[1.27-1.72]	Illumina [312768]	N
603	chr6_ssto_hap7	2408962	2408963	rs6457327	19620980	Skibola CF	2009-07-20	Nat Genet	Genetic variants at 6p21.33 are associated with susceptibility to follicular lymphoma.	Follicular lymphoma	189 European ancestry cases, 592 European controls	456 European ancestry cases, 2,785 European ancestry controls	6p21.33	STG, PSORS1	rs6457327-C	0.62	5E-11		1.69	[1.43-2.00]	Illumina [~ 500000]	N
603	chr6_ssto_hap7	2463264	2463265	rs9263789	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	TCF19	rs9263789-A	NR	3E-9		0.0228494	[0.015-0.03] unit increase	Affymetrix [321169] (imputed)	N
603	chr6_ssto_hap7	2463487	2463488	rs3130934	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	6p21.33		rs3130934-A	0.315939	3E-10		0.028368	[0.02-0.037] unit increase	NR [11722792] (imputed)	N
603	chr6_ssto_hap7	2463487	2463488	rs3130934	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	6p21.33		rs3130934-A	0.315939	3E-9		0.0263765	[0.018-0.035] unit increase	NR [11722792] (imputed)	N
603	chr6_ssto_hap7	2464245	2464246	rs7750641	33909500	Moll M	2021-04-28	Am J Physiol Lung Cell Mol Physiol	A Systematic Analysis of Protein-altering Exonic Variants in Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease	up to 31,465 European ancestry cases, up to 203,688 European ancestry controls, up to 1,413 African ancestry cases, up to 6,080 African ancestry controls, up to 287 East Asian ancestry cases, up to 7,484 East Asian ancestry controls, up to 61 Hispanic cases, up to 613 Hispanic controls	NA	6p21.33	TCF19	rs7750641-T	0.15	1E-12		1.11	[1.08 -1.14]	Illumina [at least 109036]	N
603	chr6_ssto_hap7	2464245	2464246	rs7750641	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.33	TCF19	rs7750641-T	0.1263	3E-58		3.35	[NR]	Illumina [242824]	N
603	chr6_ssto_hap7	2464551	2464552	rs2073721	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes (adjusted for BMI)	up to 48,286 European ancestry cases, up to 250,671 European ancestry controls	NA	6p21.33	MHC	rs2073721-G	0.742	6E-10		1.04	[1.03-1.06]	Affymetrix, Illumina [247470]	N
603	chr6_ssto_hap7	2464551	2464552	rs2073721	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes (adjusted for BMI)	48,286 European ancestry cases, 250,671 European ancestry controls, 33,126 African American, East Asian, Hispanic/Latino or South Asian cases, 120,161 African American, East Asian, Hispanic/Latino or South Asian controls	NA	6p21.33	MHC	rs2073721-G	0.749	2E-9		1.04	[1.02-1.05]	Affymetrix, Illumina [247470]	N
603	chr6_ssto_hap7	2464551	2464552	rs2073721	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes	up to 48,286 European ancestry cases, up to 250,671 European ancestry controls	NA	6p21.33	MHC	rs2073721-G	0.742	6E-9		1.04	[1.02-1.06]	Affymetrix, Illumina [247470]	N
603	chr6_ssto_hap7	2464551	2464552	rs2073721	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes	48,286 European ancestry cases, 250,671 European ancestry controls, 33,126 African American, East Asian, Hispanic/Latino or South Asian cases, 120,161 African American, East Asian, Hispanic/Latino or South Asian controls	NA	6p21.33	MHC	rs2073721-G	0.749	2E-10		1.04	[1.02-1.05]	Affymetrix, Illumina [247470]	N
603	chr6_ssto_hap7	2465528	2465529	rs1419881	25802187	Jiang DK	2015-04-28	Hepatology	Genetic variants in five novel loci including CFB and CD40 predispose to chronic hepatitis B.	Chronic hepatitis B infection	2,514 Chinese ancestry cases, 1,130 Chinese ancestry controls	6,600 Chinese ancestry cases, 8,127 Chinese ancestry controls	6p21.33	TCF19	rs1419881-G	0.55	3E-7		1.12	[1.08-1.18]	Illumina [3680900] (imputed)	N
603	chr6_ssto_hap7	2465528	2465529	rs1419881	23760081	Kim YJ	2013-06-10	Hum Mol Genet	A genome-wide association study identified new variants associated with the risk of chronic hepatitis B.	Chronic hepatitis B infection	400 Korean ancestry cases, 1,000 Korean ancestry controls	971 Korean ancestry cases, 1,938 Korean ancestry controls	6p21.33	TCF19	rs1419881-?	NR	1E-18		1.37	[1.23-1.52]	Illumina [719265]	N
603	chr6_ssto_hap7	2466380	2466381	rs182661945	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	6p21.33	NR	rs182661945-?	NR	2E-9		5.977	NR z score increase	Illumina [at least 830937] (imputed)	N
603	chr6_ssto_hap7	2467021	2467022	rs3130933	33649182	Penova M	2021-03-01	Proc Natl Acad Sci U S A	Genome wide association study of HTLV-1-associated myelopathy/tropical spastic paraparesis in the Japanese population.	HTLV-1 associated myelopathy	731 Japanese ancestry cases, 846 Japanese ancestry controls	NA	6p21.33		rs3130933-T	0.04	5E-9		2.44	[1.81-3.29]	Illumina [126394]	N
603	chr6_ssto_hap7	2469839	2469840	rs3130931	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	6p21.33	NR	rs3130931-C	0.6765	2E-32		0.0482	[0.04-0.056] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
603	chr6_ssto_hap7	2469839	2469840	rs3130931	21801394	Genin E	2011-07-29	Orphanet J Rare Dis	Genome-wide association study of Stevens-Johnson Syndrome and Toxic Epidermal Necrolysis in Europe.	Drug-induced Stevens-Johnson syndrome or toxic epidermal necrolysis (SJS/TEN)	424 European ancestry cases, 1,881 European ancestry controls	NA	6p21.33	POU5F1	rs3130931-C	0.69	8E-7		1.54	[1.29-1.84]	Illumina [268914]	N
603	chr6_ssto_hap7	2470941	2470942	rs185402687	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	6p21.33	POU5F1	rs185402687-C	0.0157	6E-14		0.1102721	[0.081-0.139] unit decrease	Affymetrix [~ 2500000] (imputed)	N
603	chr6_ssto_hap7	2471405	2471406	rs3130501	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	6p21.33	POU5F1	rs3130501-G	0.7833	6E-9	(EA)	0.0693	[0.046-0.093] unit increase	Affymetrix, Illumina [NR] (imputed)	N
603	chr6_ssto_hap7	2471405	2471406	rs3130501	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	6p21.33	POU5F1	rs3130501-G	0.7833	4E-12		0.063	[0.045-0.081] unit increase	Affymetrix, Illumina [NR] (imputed)	N
603	chr6_ssto_hap7	2471405	2471406	rs3130501	21801394	Genin E	2011-07-29	Orphanet J Rare Dis	Genome-wide association study of Stevens-Johnson Syndrome and Toxic Epidermal Necrolysis in Europe.	Drug-induced Stevens-Johnson syndrome or toxic epidermal necrolysis (SJS/TEN)	424 European ancestry cases, 1,881 European ancestry controls	NA	6p21.33	POU5F1	rs3130501-G	0.74	2E-8		1.74	[1.43-2.13]	Illumina [268914]	N
603	chr6_ssto_hap7	2471666	2471667	rs3132524	24509480	Mahajan A	2014-02-09	Nat Genet	Genome-wide trans-ancestry meta-analysis provides insight into the genetic architecture of type 2 diabetes susceptibility.	Type 2 diabetes	12,171 European ancestry cases, 56,862 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls	21,491 European ancestry cases, 55,647 European ancestry controls	6p21.33	TCF19, POU5F1	rs3132524-G		4E-9		1.07	[1.04-1.09]	Affymetrix, Illumina [2500000] (imputed)	N
603	chr6_ssto_hap7	2473059	2473060	rs1062630	28654678	Mandage R	2017-06-27	PLoS One	Genetic factors affecting EBV copy number in lymphoblastoid cell lines derived from the 1000 Genome Project samples.	Epstein-Barr virus copy number in lymphoblastoid cell lines	389 East Asian ancestry individuals, 189 South Asian ancestry individuals, 492 European ancestry individuals, 467 Sub-Saharan African ancestry individuals, 59 African American individuals, 157 Hispanic/Latino individuals	NA	6p21.33	POU5F1	rs1062630-?	NR	1E-6				NR [at least 880000]	N
603	chr6_ssto_hap7	2474403	2474404	rs879882	31935283	Du Z	2020-01-01	Blood Adv	A meta-analysis of genome-wide association studies of multiple myeloma among men and women of African ancestry.	Multiple myeloma	1,813 African American and African ancestry cases, 8,871 African American and African ancestry controls	NA	6p21.33	NR	rs879882-T	0.45	1E-6		1.2	[1.12-1.29]	Illumina [12683648] (imputed)	N
603	chr6_ssto_hap7	2474403	2474404	rs879882	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	6p21.33	MICA	rs879882-?	NR	2E-7	(Conditioned on rs2256183)		[NR]	Affymetrix, Illumina [2834208] (imputed)	N
603	chr6_ssto_hap7	2474998	2474999	rs1265159	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.33	intergenic	rs1265159-T	0.2191	4E-37		2.42	[NR]	Illumina [242824]	N
603	chr6_ssto_hap7	2475103	2475104	rs885950	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	6p21.33	POU5F1, HCG27, HLA	rs885950-C	0.42	7E-13		1.08	[1.07-1.09]	Illumina [at least 560000] (imputed)	N
603	chr6_ssto_hap7	2475692	2475693	rs1265158	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	POU5F1	rs1265158-G	NR	1E-8		0.0185854	[0.012-0.025] unit decrease	Affymetrix [323858] (imputed)	N
603	chr6_ssto_hap7	2475692	2475693	rs1265158	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	POU5F1	rs1265158-G	NR	3E-8		0.0179118	[0.012-0.024] unit decrease	Affymetrix [127266] (imputed)	N
603	chr6_ssto_hap7	2475692	2475693	rs1265158	28087736	Ludwig KU	2017-01-13	Hum Mol Genet	Imputation of orofacial clefting data identifies novel risk loci and sheds light on the genetic background of cleft lip ? cleft palate and cleft palate only.	Nonsyndromic cleft lip with or without cleft palate	399 European ancestry cases, 1,318 European ancestry controls, 666 European ancestry trios, 795 Asian trios	224 European ancestry cases, 921 European ancestry controls, 152 Mayan cases, 323 Mayan controls, 198 Middle Eastern cases, 391 Middle Eastern controls	6p21.33	NR	rs1265158-?		5E-6	(EA)			NR [8012124] (imputed)	N
603	chr6_ssto_hap7	2475692	2475693	rs1265158	28087736	Ludwig KU	2017-01-13	Hum Mol Genet	Imputation of orofacial clefting data identifies novel risk loci and sheds light on the genetic background of cleft lip ? cleft palate and cleft palate only.	Nonsyndromic cleft lip with or without cleft palate	399 European ancestry cases, 1,318 European ancestry controls, 666 European ancestry trios, 795 Asian trios	224 European ancestry cases, 921 European ancestry controls, 152 Mayan cases, 323 Mayan controls, 198 Middle Eastern cases, 391 Middle Eastern controls	6p21.33	NR	rs1265158-?		3E-6	(All)			NR [8012124] (imputed)	N
603	chr6_ssto_hap7	2476160	2476161	rs2269712	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.33		rs2269712-A	0.249	1E-10				Affymetrix [10369434] (imputed)	N
603	chr6_ssto_hap7	2476160	2476161	rs2269712	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	POU5F1	rs2269712-A	NR	2E-8		0.0181335	[0.012-0.024] unit decrease	Affymetrix [319769] (imputed)	N
603	chr6_ssto_hap7	2476433	2476434	rs116763857	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p21.33	PSORS1C3	rs116763857-G	0.027	1E-14		0.295	[0.22-0.37] unit decrease	Affymetrix, Illumina [7374092] (imputed)	N
603	chr6_ssto_hap7	2477196	2477197	rs3094188	23266558	Yamazaki K	2012-12-21	Gastroenterology	A genome-wide association study identifies 2 susceptibility Loci for Crohn's disease in a Japanese population.	Crohn's disease	372 Japanese ancestry cases,3,389 Japanese ancestry controls	Up to 1,151 Japanese ancestry cases, up to 15,800 Japanese ancestry controls	6p21.33	PSORS1C3	rs3094188-C	0.280	7E-7		1.61	[1.33-1.94]	Illumina [4929034] (imputed)	N
603	chr6_ssto_hap7	2477196	2477197	rs3094188	21801394	Genin E	2011-07-29	Orphanet J Rare Dis	Genome-wide association study of Stevens-Johnson Syndrome and Toxic Epidermal Necrolysis in Europe.	Drug-induced Stevens-Johnson syndrome or toxic epidermal necrolysis (SJS/TEN)	424 European ancestry cases, 1,881 European ancestry controls	NA	6p21.33	POU5F1	rs3094188-A	0.63	3E-8		1.59	[1.34-1.88]	Illumina [268914]	N
603	chr6_ssto_hap7	2478463	2478464	rs887466	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation GrimAge acceleration	34,467 European ancestry individuals	NA	6p21.33	NR	rs887466-A	0.3815	5E-10		0.1928	[0.13-0.25] unit decrease	Affymetrix, Illumina [7568149] (imputed)	N
603	chr6_ssto_hap7	2478534	2478535	rs3131018	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.33		rs3131018-A	0.369	3E-21				Affymetrix [10369434] (imputed)	N
603	chr6_ssto_hap7	2478534	2478535	rs3131018	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p21.33		rs3131018-A	0.369	2E-16				Affymetrix [10369434] (imputed)	N
603	chr6_ssto_hap7	2478534	2478535	rs3131018	21051598	Pereyra F	2010-11-04	Science	The major genetic determinants of HIV-1 control affect HLA class I peptide presentation.	HIV-1 control	516 European cases, 1,196 European controls, 341 African American cases, 892 African American controls, 117 Hispanic cases, 560 Hispanic controls	NA	6p21.33	PSORS1C3	rs3131018-C	0.625	4E-16	(EA)	2.1	[NR]	Illumina [1384048] (imputed)	N
603	chr6_ssto_hap7	2479589	2479590	rs9404937	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	POU5F1, PSORS1C3	rs9404937-A	NR	7E-13		0.0235486	[0.017-0.03] unit decrease	Affymetrix [323123] (imputed)	N
603	chr6_ssto_hap7	2482429	2482430	rs3130507	29227965	Pilling LC	2017-12-01	Aging (Albany NY)	Human longevity: 25 genetic loci associated in 389,166 UK biobank participants.	Parental longevity (mother's attained age)	412,937 British ancestry individuals	NA	6p21.33	PSORS1C3	rs3130507-G	0.72	2E-10		0.0155	[0.011-0.02] unit decrease	Affymetrix [11535925] (imputed)	N
603	chr6_ssto_hap7	2482429	2482430	rs3130507	29227965	Pilling LC	2017-12-01	Aging (Albany NY)	Human longevity: 25 genetic loci associated in 389,166 UK biobank participants.	Parental longevity (combined parental attained age, Martingale residuals)	389,166 British ancestry individuals	NA	6p21.33	PSORS1C3	rs3130507-G	NR	4E-6			[NR]	Affymetrix [11535925] (imputed)	N
603	chr6_ssto_hap7	2489209	2489210	rs7753892	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GNLY	5,366 Icelandic ancestry individuals	NA	6p21.33		rs7753892-C	0.3652	5E-15		0.154032	[0.12-0.19] unit increase	Illumina [7506463] (imputed)	N
603	chr6_ssto_hap7	2489209	2489210	rs7753892	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GNLY	5,366 Icelandic ancestry individuals	NA	6p21.33		rs7753892-C	0.3652	2E-14		0.15056	[0.11-0.19] unit increase	Illumina [7506463] (imputed)	N
603	chr6_ssto_hap7	2489309	2489310	rs13203101	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p21.33	NR	rs13203101-?	NR	3E-15		0.1435	[0.11-0.18] unit decrease	Illumina [at least 560000] (imputed)	N
603	chr6_ssto_hap7	2489381	2489382	rs3130458	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	POU5F1	rs3130458-T	NR	6E-12		0.0238773	[0.017-0.031] unit decrease	Affymetrix [323858] (imputed)	N
603	chr6_ssto_hap7	2489381	2489382	rs3130458	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	POU5F1	rs3130458-T	NR	3E-11		0.0230527	[0.016-0.03] unit decrease	Affymetrix [127266] (imputed)	N
603	chr6_ssto_hap7	2489767	2489768	rs6922051	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	POU5F1	rs6922051-C	NR	7E-12		0.0225553	[0.016-0.029] unit decrease	Affymetrix [323123] (imputed)	N
604	chr6_ssto_hap7	2490732	2490733	rs1265181	30921485	Bejaoui Y	2019-03-28	Exp Dermatol	Genome-wide association study of psoriasis in an Egyptian population.	Psoriasis	215 Egyptian ancestry cases, 416 Egyptian ancestry controls	321 Egyptian ancestry cases, 253 Egyptian ancestry controls	6p21.33	HCG27	rs1265181-?	NR	1E-10		2.0	[1.62-2.45]	Illumina [312245]	N
604	chr6_ssto_hap7	2490732	2490733	rs1265181	19169255	Zhang XJ	2009-01-25	Nat Genet	Psoriasis genome-wide association study identifies susceptibility variants within LCE gene cluster at 1q21.	Psoriasis	1,139 Han Chinese ancestry cases, 1,132 Han Chinese ancestry controls	5,721 Chinese ancestry cases, 7,340 Chinese ancestry controls	6p21.33	MHC	rs1265181-?	NR	2E-208		22.62		Illumina [494902]	N
604	chr6_ssto_hap7	2490988	2490989	rs9368661	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	6p21.33	NR	rs9368661-T	0.258577	1E-19		0.02376896	[0.019-0.029] unit increase	Affymetrix [93095623] (imputed)	N
604	chr6_ssto_hap7	2491135	2491136	rs9263850	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG299F13.17	rs9263850-G	NR	1E-9		0.0190638	[0.013-0.025] unit decrease	Affymetrix [321016] (imputed)	N
604	chr6_ssto_hap7	2491135	2491136	rs9263850	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG299F13.17	rs9263850-G	NR	5E-16		0.0275644	[0.021-0.034] unit decrease	Affymetrix [323123] (imputed)	N
604	chr6_ssto_hap7	2493130	2493131	rs9295958	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG299F13.17	rs9295958-A	NR	1E-10		0.0250366	[0.017-0.033] unit decrease	Affymetrix [323123] (imputed)	N
604	chr6_ssto_hap7	2493507	2493507	rs145171179	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	6p21.33	XXbac-BPG299F13.17	rs145171179-GA	0.212169	4E-9		0.020656763	[0.014-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
604	chr6_ssto_hap7	2493579	2493580	rs9263861	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	6p21.33	HLA region	rs9263861-?	NR	3E-8	(EA)			Affymetrix, Illumina [10537485] (imputed)	N
604	chr6_ssto_hap7	2493579	2493580	rs9263861	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	6p21.33	HLA region	rs9263861-?	NR	3E-8				Affymetrix, Illumina [10537485] (imputed)	N
604	chr6_ssto_hap7	2493778	2493779	rs7741829	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	6p21.33	XXbac-BPG299F13.17	rs7741829-C	0.289979	2E-13		0.019235091	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
604	chr6_ssto_hap7	2493966	2493967	rs7742179	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG299F13.17	rs7742179-A	NR	3E-13		0.0215095	[0.016-0.027] unit decrease	Affymetrix [321016] (imputed)	N
604	chr6_ssto_hap7	2493966	2493967	rs7742179	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG299F13.17	rs7742179-A	NR	9E-21		0.0299448	[0.024-0.036] unit decrease	Affymetrix [323123] (imputed)	N
604	chr6_ssto_hap7	2494759	2494761	rs550239034	31577861	Dai J	2019-10-31	Int J Cancer	Genome-wide association study of INDELs identified four novel susceptibility loci associated with lung cancer risk.	Lung cancer	20,871 European ancestry cases, 15,971 European ancestry controls, 2,331 Chinese ancestry cases, 3,077 Chinese ancestry controls	NA	6p21.33	POU5F1	rs550239034-D	0.25	2E-7		0.92	[0.89-0.95]	Illumina [484196]	N
604	chr6_ssto_hap7	2498916	2498917	rs28749551	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	6p21.33	XXbac-BPG299F13.17	rs28749551-C	0.189749	9E-23		0.029464645	[0.024-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
604	chr6_ssto_hap7	2498916	2498917	rs28749551	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	6p21.33	XXbac-BPG299F13.17	rs28749551-C	0.1902	8E-18		0.03930922	[0.03-0.048] unit decrease	Affymetrix [~ 2500000] (imputed)	N
604	chr6_ssto_hap7	2499723	2499724	rs28362333	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	6p21.33		rs28362333-C	0.530396419	7E-20		0.08448383	[0.066-0.103] unit increase	Illumina [13429769] (imputed)	N
604	chr6_ssto_hap7	2500780	2500781	rs28362345	31935283	Du Z	2020-01-01	Blood Adv	A meta-analysis of genome-wide association studies of multiple myeloma among men and women of African ancestry.	Multiple myeloma	1,813 African American and African ancestry cases, 8,871 African American and African ancestry controls	NA	6p21.33	NR	rs28362345-T	0.7	6E-7		1.24	[1.14-1.34]	Illumina [12683648] (imputed)	N
604	chr6_ssto_hap7	2502973	2502974	rs6903896	20585627	Eriksson N	2010-06-24	PLoS Genet	Web-based, participant-driven studies yield novel genetic associations for common traits.	Common traits (Other)	9,126 European ancestry individuals	NA	6p21.33	NR	rs6903896-?	NR	6E-7	(sneeze)			Illumina [535076]	N
604	chr6_ssto_hap7	2503341	2503342	rs9263868	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p21.33	NR	rs9263868-?	NR	4E-21		0.1525	[0.12-0.18] unit increase	Illumina [at least 560000] (imputed)	N
604	chr6_ssto_hap7	2503646	2503647	rs138864366	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs138864366-C	0.027	4E-32	(Cyclic AMP-responsive element-binding protein 3-like protein 4, CREB3L4.11308.8.3)	1.03	[0.85-1.21] unit increase	Affymetrix [10572788] (imputed)	N
604	chr6_ssto_hap7	2504514	2504515	rs28362359	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs28362359-C	0.875	4E-34				Affymetrix [10369434] (imputed)	N
604	chr6_ssto_hap7	2504955	2504956	rs9263869	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCG27	rs9263869-C	NR	1E-8		0.0173241	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_ssto_hap7	2504955	2504956	rs9263869	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HCG27	rs9263869-C	NR	3E-8		0.0168281	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_ssto_hap7	2504955	2504956	rs9263869	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCG27	rs9263869-C	NR	3E-10		0.0208071	[0.014-0.027] unit decrease	Affymetrix [323123] (imputed)	N
604	chr6_ssto_hap7	2505072	2505073	rs1793899	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCG27	rs1793899-A	NR	2E-14		0.0870835	[0.065-0.109] unit decrease	Affymetrix [321016] (imputed)	N
604	chr6_ssto_hap7	2505169	2505170	rs9366770	30980028	de Kovel CGF	2019-04-12	Sci Rep	The molecular genetics of hand preference revisited.	Handedness (Right-handed vs. non-right-handed)	293,857 British ancestry cases, 37,180 British ancestry controls	NA	6p21.33	HCG27	rs9366770-?	NR	2E-9				Affymetrix [~ 15000000] (imputed)	N
604	chr6_ssto_hap7	2505469	2505470	rs9263871	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	6p21.33	NR	rs9263871-?		2E-14	(MICA)			Illumina [NR]	N
604	chr6_ssto_hap7	2505469	2505470	rs9263871	24925725	Chung SA	2014-06-12	J Am Soc Nephrol	Lupus nephritis susceptibility loci in women with systemic lupus erythematosus.	Lupus nephritis in systemic lupus erythematosus	588 European ancestry cases, 1,412 European ancestry controls	NA	6p21.33	HCG27	rs9263871-G	NR	9E-6	(Dominant)	1.7	[1.35-2.13]	Affymetrix, Illumina [1621689] (imputed)	N
604	chr6_ssto_hap7	2505855	2505856	rs9263875	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HCG27	rs9263875-G	NR	6E-11		0.0190363	[0.013-0.025] unit increase	Affymetrix [321169] (imputed)	N
604	chr6_ssto_hap7	2507097	2507098	rs3132510	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Diastolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	6p21.33	HCG27	rs3132510-C	0.6478	3E-14		0.3056	[0.23-0.38] mmHg increase	Affymetrix [NR] (imputed)	N
604	chr6_ssto_hap7	2507097	2507098	rs3132510	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p21.33	NR	rs3132510-?	NR	1E-7		5.296	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
604	chr6_ssto_hap7	2507097	2507098	rs3132510	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p21.33	NR	rs3132510-?	NR	4E-14		0.2588	[0.19-0.32] unit decrease	Illumina [at least 560000] (imputed)	N
604	chr6_ssto_hap7	2507302	2507303	rs3887381	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCG27	rs3887381-T	NR	8E-14		0.0210107	[0.015-0.027] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_ssto_hap7	2507302	2507303	rs3887381	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HCG27	rs3887381-T	NR	2E-12		0.0197787	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_ssto_hap7	2507302	2507303	rs3887381	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCG27	rs3887381-T	NR	3E-20		0.0282671	[0.022-0.034] unit decrease	Affymetrix [323123] (imputed)	N
604	chr6_ssto_hap7	2509483	2509484	rs2894181	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCG27	rs2894181-G	NR	5E-9		0.0164875	[0.011-0.022] unit decrease	Affymetrix [321016] (imputed)	N
604	chr6_ssto_hap7	2509714	2509715	rs28744239	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p21.33	NR	rs28744239-C	0.147	5E-9	(IFNAR2_of_CD20p)			Illumina [5084123] (imputed)	N
604	chr6_ssto_hap7	2509880	2509881	rs185386680	26599303	Cheung CL	2016-01-12	Clin Pharmacol Ther	HLA-B*38:02:01 predicts carbimazole/methimazole-induced agranulocytosis.	Antithyroid drug-induced agranulocytosis	20 Southern Chinese ancestry cases, 775 East Asian ancestry controls	4 Southern Chinese ancestry cases, 387 East Asian ancestry controls	6p21.33	HLA-B*38:02:01	rs185386680-?	NR	4E-29		24.7	9.2-66.3	Illumina [5339940] (imputed)	N
604	chr6_ssto_hap7	2510897	2510898	rs1619179	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs for peptic ulcer and gastro-oesophageal reflux disease)	53,137 European ancestry cases, 79,230 European ancestry controls, 53,363 East Asian ancestry cases, 125,363 East Asian ancestry controls	NA	6p21.33		rs1619179-C	NR	4E-11		0.0701	[0.049-0.091] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
604	chr6_ssto_hap7	2510897	2510898	rs1619179	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (drugs for peptic ulcer and gastro-oesophageal reflux disease)	53,137 European ancestry cases, 79,230 European ancestry controls	NA	6p21.33	HCG27	rs1619179-C	0.154861	4E-11		0.07005687	[0.049-0.091] unit decrease	Affymetrix [7288503] (imputed)	N
604	chr6_ssto_hap7	2510897	2510898	rs1619179	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p21.33	NR	rs1619179-?	NR	3E-10		0.0882	[0.061-0.116] unit decrease	Illumina [at least 560000] (imputed)	N
604	chr6_ssto_hap7	2511197	2511198	rs4410769	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCG27	rs4410769-T	NR	2E-9		0.0188767	[0.013-0.025] unit increase	Affymetrix [323858] (imputed)	N
604	chr6_ssto_hap7	2511197	2511198	rs4410769	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HCG27	rs4410769-T	NR	3E-8		0.0173066	[0.011-0.023] unit increase	Affymetrix [127266] (imputed)	N
604	chr6_ssto_hap7	2512461	2512462	rs9501519	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCG27	rs9501519-T	NR	3E-11		0.0187496	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_ssto_hap7	2512461	2512462	rs9501519	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HCG27	rs9501519-T	NR	1E-10		0.0181428	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_ssto_hap7	2512609	2512610	rs9501520	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCG27	rs9501520-C	NR	2E-10		0.0200324	[0.014-0.026] unit increase	Affymetrix [323858] (imputed)	N
604	chr6_ssto_hap7	2512609	2512610	rs9501520	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HCG27	rs9501520-C	NR	6E-10		0.0194184	[0.013-0.026] unit increase	Affymetrix [127266] (imputed)	N
604	chr6_ssto_hap7	2513148	2513149	rs17191272	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCG27	rs17191272-C	NR	3E-11		0.020396	[0.014-0.026] unit decrease	Affymetrix [323123] (imputed)	N
604	chr6_ssto_hap7	2513919	2513920	rs36039697	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.33		rs36039697-G	0.748	2E-17				Affymetrix [10369434] (imputed)	N
604	chr6_ssto_hap7	2519124	2519125	rs3869109	22319020	Davies RW	2012-02-07	Circ Cardiovasc Genet	A genome-wide association study for coronary artery disease identifies a novel susceptibility locus in the major histocompatibility complex.	Coronary heart disease	7,123 European ancestry cases, 6,826 European ancestry controls	5,211 European ancestry cases, 5,821 European ancestry controls	6p21.33	HCG27, HLA-C	rs3869109-G	NR	1E-9		1.14	[NR]	Affymetrix [~ 5000000] (imputed)	N
604	chr6_ssto_hap7	2520964	2520965	rs9263963	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs9263963-T	0.113293342563644	1E-6	(IGP23)	0.2567	[0.15-0.36] unit increase	Illumina [~ 2500000] (imputed)	N
604	chr6_ssto_hap7	2522012	2522013	rs3130467	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (mother's age at death or mother's attained age)	up to 699,000 individuals	NA	6p21.33	NR	rs3130467-G		3E-7				Illumina [458525]	N
604	chr6_ssto_hap7	2526238	2526239	rs9263988	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.33		rs9263988-C	0.937	6E-19				Affymetrix [10369434] (imputed)	N
604	chr6_ssto_hap7	2527718	2527719	rs9263993	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	6p21.33	HLA region	rs9263993-?	NR	9E-9	(EA)			Affymetrix, Illumina [10537485] (imputed)	N
604	chr6_ssto_hap7	2527718	2527719	rs9263993	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	6p21.33	HLA region	rs9263993-?	NR	2E-7				Affymetrix, Illumina [10537485] (imputed)	N
604	chr6_ssto_hap7	2527749	2527750	rs6904670	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28- CD8+ T cell %CD8+ T cell	3,440 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs6904670-G	0.64142	3E-8		0.1458	[0.094-0.197] unit decrease	Illumina [18357815] (imputed)	N
604	chr6_ssto_hap7	2530169	2530170	rs6928399	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG299F13.16	rs6928399-T	NR	7E-12		0.0204256	[0.015-0.026] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_ssto_hap7	2530169	2530170	rs6928399	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG299F13.16	rs6928399-T	NR	9E-11		0.0193191	[0.013-0.025] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_ssto_hap7	2530169	2530170	rs6928399	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG299F13.16	rs6928399-T	NR	7E-11		0.0196879	[0.014-0.026] unit increase	Affymetrix [321169] (imputed)	N
604	chr6_ssto_hap7	2530947	2530948	rs7769059	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	6p21.33	HCG27	rs7769059-G	0.716625	1E-12		0.0150833	[0.011-0.019] unit increase	Affymetrix [NR] (imputed)	N
604	chr6_ssto_hap7	2532216	2532217	rs3134783	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Sarcoidosis	1,718 European ancestry cases, 484,955 European ancestry controls, 220 East Asian ancestry cases, 177,667 East Asian ancestry controls	NA	6p21.33		rs3134783-A	NR	6E-9		0.2583	[0.17-0.35] unit increase	Affymetrix, Illumina [25845061] (imputed)	N
604	chr6_ssto_hap7	2532467	2532468	rs3130941	24324648	Yatagai Y	2013-12-04	PLoS One	Genome-wide association study for levels of total serum IgE identifies HLA-C in a Japanese population.	IgE levels	967 Japanese ancestry individuals, 213 Japanese ancestry asthmatic individuals	1,894 Japanese ancestry individuals, 580 Japanese ancestry asthmatic individuals	6p21.33	HCG27, HLA-C	rs3130941-C	0.25	1E-10		0.098	unit increase	Illumina [479940]	N
604	chr6_ssto_hap7	2534163	2534164	rs3130473	29534301	Nishida N	2018-03-13	Hepatology	Key HLA-DRB1-DQB1 haplotypes and role of the BTNL2 gene for response to a hepatitis B vaccine.	Response to hepatitis B vaccine	107 Japanese ancestry low responder individuals, 351 Japanese ancestry intermediate responder individuals, 735 Japanese ancestry high responder individuals	NA	6p21.33	HLA-C	rs3130473-?		8E-6		0.128	unit decrease	Affymetrix [427664]	N
604	chr6_ssto_hap7	2534421	2534422	rs3869114	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.33		rs3869114-G	NR	2E-7		1.204	[1.122-1.292]	Affymetrix [7846216] (imputed)	N
604	chr6_ssto_hap7	2534721	2534722	rs11967684	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	6p21.33	intergenic	rs11967684-A	0.3428	2E-24		0.03858957	[0.031-0.046] unit increase	Affymetrix [~ 2500000] (imputed)	N
604	chr6_ssto_hap7	2534721	2534722	rs11967684	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	6p21.33	intergenic	rs11967684-A	0.3428	1E-29		0.04284561	[0.035-0.05] unit increase	Affymetrix [~ 2500000] (imputed)	N
604	chr6_ssto_hap7	2535719	2535720	rs7757622	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG299F13.16	rs7757622-C	NR	2E-16		0.023531	[0.018-0.029] unit decrease	Affymetrix [321169] (imputed)	N
604	chr6_ssto_hap7	2539651	2539652	rs3869115	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	46,511 Asian ancestry cases, 169,776 Asian ancestry controls	NA	6p21.33	NR	rs3869115-G	0.1981	1E-17		0.1004	[0.077-0.123] unit decrease	Affymetrix, Illumina [1077427] (imputed)	N
604	chr6_ssto_hap7	2539651	2539652	rs3869115	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p21.33	HCG27, HLA-C	rs3869115-C	0.06	6E-7	(Turkish)	2.23	[1.62-3.08]	Illumina [up to 547389]	N
604	chr6_ssto_hap7	2539943	2539944	rs3134770	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p21.33	NR	rs3134770-?	NR	8E-8		0.0723	[0.046-0.099] unit increase	Illumina [at least 560000] (imputed)	N
604	chr6_ssto_hap7	2541164	2541165	rs3130685	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Effector Memory CD8+ T cell Absolute Count	3,395 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs3130685-T	0.34389	2E-8		0.1803	[0.12-0.24] unit increase	Illumina [18332267] (imputed)	N
604	chr6_ssto_hap7	2541164	2541165	rs3130685	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8+ T cell Absolute Count	3,652 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs3130685-T	0.34283	4E-11		0.1887	[0.13-0.24] unit increase	Illumina [18427348] (imputed)	N
604	chr6_ssto_hap7	2541164	2541165	rs3130685	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8+ T cell %leukocyte	3,668 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs3130685-T	0.34283	1E-9		0.1801	[0.12-0.24] unit increase	Illumina [18430788] (imputed)	N
604	chr6_ssto_hap7	2541164	2541165	rs3130685	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28- CD8+ T cell Absolute Count	3,408 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs3130685-T	0.3439	3E-10		0.1894	[0.13-0.25] unit increase	Illumina [18340221] (imputed)	N
604	chr6_ssto_hap7	2541164	2541165	rs3130685	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD127- CD8+ T cell Absolute Count	3,371 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs3130685-T	0.34485	9E-10		0.1905	[0.13-0.25] unit increase	Illumina [18321960] (imputed)	N
604	chr6_ssto_hap7	2542713	2542714	rs9461666	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6p21.33		rs9461666-G	0.021815	7E-10		0.0478569	[0.033-0.063] unit increase	Affymetrix [93095623] (imputed)	N
604	chr6_ssto_hap7	2543005	2543006	rs5875302	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	349,856 European ancestry individuals, 91,908 East Asian ancestry individuals	NA	6p21.33		rs5875302-C	NR	9E-24		0.046	[0.037-0.055] unit decrease	Affymetrix, Illumina [20529536] (imputed)	N
604	chr6_ssto_hap7	2543538	2543539	rs3132497	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG299F13.16	rs3132497-G	NR	3E-9		0.0221455	[0.015-0.029] unit increase	Affymetrix [323123] (imputed)	N
604	chr6_ssto_hap7	2546694	2546695	rs117506082	32072174	Okamoto D	2020-02-19	Inflamm Bowel Dis	Genetic Analysis of Ulcerative Colitis in Japanese Individuals Using Population-specific SNP Array.	Ulcerative colitis	601 Japanese ancestry cases, 1,962 Japanese ancestry controls	1,075 Japanese ancestry cases, 419 Japanese ancestry controls	6p21.33	HLA	rs117506082-G	NR	4E-88		3.39	[2.99-3.83]	NR [4760823] (imputed)	N
604	chr6_ssto_hap7	2546786	2546787	rs1639106	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG299F13.16	rs1639106-T	NR	9E-12		0.0601547	[0.043-0.077] unit decrease	Affymetrix [321016] (imputed)	N
604	chr6_ssto_hap7	2546999	2547000	rs117759870	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs117759870-?		6E-8		1.06	[1.04-1.09]	Illumina [7645193] (imputed)	N
604	chr6_ssto_hap7	2552466	2552467	rs3130427	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	6p21.33		rs3130427-G	0.594789	2E-27		0.029043514	[0.024-0.034] unit increase	Affymetrix [93095623] (imputed)	N
604	chr6_ssto_hap7	2553440	2553441	rs55839536	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs55839536-A	NR	2E-8		0.023416	[0.015-0.032] unit decrease	Affymetrix [321016] (imputed)	N
604	chr6_ssto_hap7	2553722	2553723	rs7449932	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	6p21.33		rs7449932-C	0.223006	2E-9		0.0272642	[0.018-0.036] unit increase	NR [11722792] (imputed)	N
604	chr6_ssto_hap7	2554268	2554269	rs3130436	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	6p21.33	NR	rs3130436-?	NR	4E-7		0.0523	[0.032-0.072] unit decrease	Illumina [at least 560000] (imputed)	N
604	chr6_ssto_hap7	2554268	2554269	rs3130436	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	6p21.33	HCG27, HLA-C	rs3130436-?	NR	4E-7		1.0537407	[1.03-1.08]	Illumina [13754664] (imputed)	N
604	chr6_ssto_hap7	2554508	2554509	rs3130439	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LILRB1	5,363 Icelandic ancestry individuals	NA	6p21.33		rs3130439-G	0.4964	8E-23		0.179906	[0.14-0.22] unit decrease	Illumina [7506463] (imputed)	N
604	chr6_ssto_hap7	2554784	2554785	rs17197839	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-C	rs17197839-A	NR	1E-8		0.0267548	[0.018-0.036] unit decrease	Affymetrix [323123] (imputed)	N
604	chr6_ssto_hap7	2554784	2554785	rs17197839	33549134	Adolphe C	2021-02-06	Genome Med	Genetic and functional interaction network analysis reveals global enrichment of regulatory T cell genes influencing basal cell carcinoma susceptibility.	Basal cell carcinoma	17,416 European ancestry cases, 375,455 European ancestry controls	NA	6p21.33	HLA-C	rs17197839-A	0.118172	3E-11		0.1165139	[0.082-0.151] unit decrease	Affymetrix [7260263] (imputed)	N
604	chr6_ssto_hap7	2554836	2554837	rs1793892	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs1793892-C	NR	2E-9		0.0258258	[0.017-0.034] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_ssto_hap7	2554836	2554837	rs1793892	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-C	rs1793892-C	NR	3E-9		0.0256321	[0.017-0.034] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_ssto_hap7	2554854	2554855	rs17191538	33574277	Kawai Y	2021-02-11	NPJ Genom Med	Mapping of susceptible variants for cold medicine-related Stevens-Johnson syndrome by whole-genome resequencing.	Cold medicine-related Stevens-Johnson syndrome/toxic epidermal necrolysis (SJS/TEN) with severe ocular complications	133 Japanese ancestry cases, 418 Japanese ancestry controls	NA	6p21.33		rs17191538-G	0.2231	7E-7		2.483		Illumina [7608150]	N
604	chr6_ssto_hap7	2555153	2555154	rs3095254	25096241	Keller MF	2014-08-05	Hum Mol Genet	Trans-ethnic meta-analysis of white blood cell phenotypes.	Monocyte count	9,810 Japanese ancestry individuals, 16,550 European ancestry individuals, 7,369 African American individuals	NA	6p21.33	MHC	rs3095254-C	0.461	8E-9	(Japanese)	0.035	[0.023-0.047] unit increase	Illumina [NR] (imputed)	N
604	chr6_ssto_hap7	2555153	2555154	rs3095254	21738478	Okada Y	2011-06-30	PLoS Genet	Identification of nine novel loci associated with white blood cell subtypes in a Japanese population.	White blood cell types	8,794 Japanese ancestry individuals	5,998 Japanese ancestry individuals	6p21.33	MHC	rs3095254-C	0.46	6E-11	(monocyte count)	0.074	[0.05-0.09] unit increase	Illumina [2178645] (imputed)	N
604	chr6_ssto_hap7	2555667	2555668	rs1793889	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.33	CCHCR1, CDSN, HCG27, HLA-C, POU5F1, PSORS1C1, PSORS1C2, PSORS1C3, TCF19	rs1793889-?		1E-11		1.0869565	[1.06-1.11]	Affymetrix, Illumina [NR]	N
604	chr6_ssto_hap7	2558142	2558143	rs9264277	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.33		rs9264277-T	0.367	2E-13				Affymetrix [10369434] (imputed)	N
604	chr6_ssto_hap7	2558142	2558143	rs9264277	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.33		rs9264277-T	0.367	4E-8				Affymetrix [10369434] (imputed)	N
604	chr6_ssto_hap7	2558142	2558143	rs9264277	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.33		rs9264277-T	0.367	2E-36				Affymetrix [10369434] (imputed)	N
604	chr6_ssto_hap7	2558142	2558143	rs9264277	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	6p21.33		rs9264277-T	0.367	1E-9				Affymetrix [10369434] (imputed)	N
604	chr6_ssto_hap7	2558142	2558143	rs9264277	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs9264277-T	0.367	6E-12				Affymetrix [10369434] (imputed)	N
604	chr6_ssto_hap7	2558192	2558193	rs201871433	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	6p21.33		rs201871433-C	0.598843295	3E-14		0.080714226	[0.06-0.101] unit increase	Illumina [13134967] (imputed)	N
604	chr6_ssto_hap7	2560242	2560243	rs2440367	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs2440367-T	NR	4E-8		0.0177003	[0.011-0.024] unit increase	Affymetrix [321016] (imputed)	N
604	chr6_ssto_hap7	2560709	2560710	rs150543164	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	6p21.33	NR	rs150543164-C	0.971256	7E-11		0.0420252	[0.029-0.055] unit decrease	NR [NR]	N
604	chr6_ssto_hap7	2561658	2561659	rs9264354	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	6p21.33		rs9264354-T	0.225	2E-41				Affymetrix [10369434] (imputed)	N
604	chr6_ssto_hap7	2561659	2561660	rs9264355	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs9264355-T	NR	2E-11		0.0253701	[0.018-0.033] unit increase	Affymetrix [321016] (imputed)	N
604	chr6_ssto_hap7	2561830	2561831	rs6939900	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	6p21.33		rs6939900-C	0.644363	2E-13		0.0298309	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
604	chr6_ssto_hap7	2561830	2561831	rs6939900	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	6p21.33		rs6939900-C	0.644357	3E-11		0.0278375	[0.02-0.036] unit decrease	NR [11722792] (imputed)	N
604	chr6_ssto_hap7	2561830	2561831	rs6939900	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.33		rs6939900-T	0.35467	3E-26		0.03356077	[0.027-0.04] unit increase	Affymetrix [93095623] (imputed)	N
604	chr6_ssto_hap7	2562013	2562014	rs17191797	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	6p21.33	intergenic	rs17191797-G	0.0881	1E-10		0.04047984	[0.028-0.053] unit decrease	Affymetrix [~ 2500000] (imputed)	N
604	chr6_ssto_hap7	2563024	2563025	rs2844626	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Varicose veins	22,037 European ancestry cases, 437,665 European ancestry controls, 474 East Asian ancestry cases, 178,252 East Asian ancestry controls	NA	6p21.33		rs2844626-T	NR	1E-10		0.0734	[0.051-0.096] unit decrease	Affymetrix, Illumina [25842955] (imputed)	N
604	chr6_ssto_hap7	2563195	2563196	rs9264408	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs9264408-G	NR	5E-13		0.0253984	[0.019-0.032] unit decrease	Affymetrix [319769] (imputed)	N
604	chr6_ssto_hap7	2563195	2563196	rs9264408	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-C	rs9264408-G	NR	3E-12		0.0245478	[0.018-0.031] unit decrease	Affymetrix [319769] (imputed)	N
604	chr6_ssto_hap7	2563405	2563406	rs9264413	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	6p21.33	intergenic	rs9264413-T	0.8098	4E-40		0.0600596	[0.051-0.069] unit decrease	Affymetrix [~ 2500000] (imputed)	N
604	chr6_ssto_hap7	2563468	2563469	rs17192134	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	6p21.33		rs17192134-G	0.916	3E-52				Affymetrix [10369434] (imputed)	N
604	chr6_ssto_hap7	2563468	2563469	rs17192134	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p21.33	NR	rs17192134-T	0.084521	2E-25		0.048713	[0.04-0.058] unit increase	Affymetrix [93095623] (imputed)	N
604	chr6_ssto_hap7	2563912	2563913	rs17192225	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Prostate cancer	7,438 White British ancestry cases, 118,206 White British ancestry controls	NA	6p21.33		rs17192225-?	NR	2E-6		1.12175	[1.07-1.17]	NR [680312]	N
604	chr6_ssto_hap7	2564191	2564192	rs9357120	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	91,908 East Asian ancestry individuals	NA	6p21.33		rs9357120-A	0.563923	1E-31		0.0533207	[0.044-0.062] unit decrease	Illumina [13469940] (imputed)	N
604	chr6_ssto_hap7	2564191	2564192	rs9357120	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	81,042 East Asian ancestry individuals	NA	6p21.33	NR	rs9357120-T	0.42999	6E-32		0.058958	[0.049-0.069] SD units increase	Affymetrix, Illumina [16286709] (imputed)	N
604	chr6_ssto_hap7	2565462	2565463	rs2853961	31080455	Fatumo S	2019-04-26	Front Genet	Complimentary Methods for Multivariate Genome-Wide Association Study Identify New Susceptibility Genes for Blood Cell Traits.	Blood cell traits (multivariate analysis)	up to 6,407 Sub-Saharan African ancestry individuals	NA	6p21.33	HLA-C	rs2853961-?	NR	4E-8				Illumina [20594536] (imputed)	N
604	chr6_ssto_hap7	2565584	2565585	rs3130542	25802187	Jiang DK	2015-04-28	Hepatology	Genetic variants in five novel loci including CFB and CD40 predispose to chronic hepatitis B.	Chronic hepatitis B infection	2,514 Chinese ancestry cases, 1,130 Chinese ancestry controls	6,600 Chinese ancestry cases, 8,127 Chinese ancestry controls	6p21.33	HLA-C	rs3130542-A	0.16	9E-7		1.17	[1.10-1.24]	Illumina [3680900] (imputed)	N
604	chr6_ssto_hap7	2565584	2565585	rs3130542	24162738	Hu Z	2013-10-27	Nat Genet	New loci associated with chronic hepatitis B virus infection in Han Chinese.	Hepatitis B	951 Han Chinese ancestry HBV carrier cases, 937 Han Chinese ancestry HBV cleared controls	4,230 Chinese ancestry HBV carrier cases, 3,051 Chinese ancestry HBV cleared controls, 2,622 Chinese ancestry controls	6p21.33	HLA-C	rs3130542-A	0.13	9E-14		1.33	[1.23-1.44]	Illumina [490610]	N
604	chr6_ssto_hap7	2565924	2565925	rs2524108	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs2524108-G	NR	1E-9		0.0191519	[0.013-0.025] unit decrease	Affymetrix [319769] (imputed)	N
604	chr6_ssto_hap7	2565924	2565925	rs2524108	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-C	rs2524108-G	NR	4E-9		0.0186193	[0.012-0.025] unit decrease	Affymetrix [319769] (imputed)	N
604	chr6_ssto_hap7	2565924	2565925	rs2524108	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.33	HLA-C	rs2524108-G	0.273435	6E-44		0.050841797	[0.044-0.058] unit decrease	Affymetrix [93095623] (imputed)	N
604	chr6_ssto_hap7	2566016	2566017	rs2844623	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	6p21.33	POU5F1, TCF19	rs2844623-C	0.78	1E-17		1.1	1.08-1.12	Illumina [12557761] (imputed)	N
604	chr6_ssto_hap7	2566297	2566298	rs2524106	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs2524106-A	NR	1E-8		0.0194959	[0.013-0.026] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_ssto_hap7	2566297	2566298	rs2524106	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-C	rs2524106-A	NR	4E-8		0.0188058	[0.012-0.026] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_ssto_hap7	2566383	2566384	rs2524105	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	86,890 East Asian ancestry individuals	NA	6p21.33	NR	rs2524105-G	0.317247	4E-41		0.06908	[0.059-0.079] SD units increase	Affymetrix, Illumina [16279099] (imputed)	N
604	chr6_ssto_hap7	2567982	2567983	rs9264533	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	6p21.33	HLA-C	rs9264533-C	0.8091	4E-33		0.05433897	[0.045-0.063] unit increase	Affymetrix [~ 2500000] (imputed)	N
604	chr6_ssto_hap7	2568129	2568130	rs185207145	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin	108,054 Japanese ancestry individuals	NA	6p21.33	HCG27, HLA-C	rs185207145-?	NR	1E-8		0.05419	[0.036-0.073] unit increase novel	Illumina [6108953] (imputed)	N
604	chr6_ssto_hap7	2568738	2568739	rs2395470	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs2395470-A	NR	5E-15		0.0233443	[0.017-0.029] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_ssto_hap7	2568738	2568739	rs2395470	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-C	rs2395470-A	NR	5E-14		0.0224589	[0.017-0.028] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_ssto_hap7	2568983	2568984	rs2853953	25802187	Jiang DK	2015-04-28	Hepatology	Genetic variants in five novel loci including CFB and CD40 predispose to chronic hepatitis B.	Chronic hepatitis B infection	2,514 Chinese ancestry cases, 1,130 Chinese ancestry controls	6,600 Chinese ancestry cases, 8,127 Chinese ancestry controls	6p21.33	HLA-C	rs2853953-A	0.9	5E-20		1.47	[1.35-1.59]	Illumina [3680900] (imputed)	N
604	chr6_ssto_hap7	2569224	2569225	rs9264579	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	6p21.33		rs9264579-A	0.344224	5E-18		0.0325012	[0.025-0.04] unit increase	Illumina [13476266] (imputed)	N
604	chr6_ssto_hap7	2569593	2569594	rs2853951	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-C	rs2853951-C	NR	3E-19		0.0279053	[0.022-0.034] unit increase	Affymetrix [323123] (imputed)	N
604	chr6_ssto_hap7	2569653	2569654	rs2853950	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs2853950-T	NR	1E-10		0.0182212	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_ssto_hap7	2569653	2569654	rs2853950	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-C	rs2853950-T	NR	4E-10		0.0177105	[0.012-0.023] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_ssto_hap7	2569653	2569654	rs2853950	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HLA-C	rs2853950-T	NR	2E-9		0.0171726	[0.012-0.023] unit increase	Affymetrix [321169] (imputed)	N
604	chr6_ssto_hap7	2569888	2569889	rs34131062	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	6p21.33	MICB	rs34131062-?	NR	3E-10	(S_VLDL_TG)	0.07202289	NR unit increase	Illumina [609262]	N
604	chr6_ssto_hap7	2569888	2569889	rs34131062	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	6p21.33	MICB	rs34131062-?	NR	1E-9	(VLDL_TG)	0.071520545	NR unit increase	Illumina [609262]	N
604	chr6_ssto_hap7	2569888	2569889	rs34131062	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	6p21.33	MICB	rs34131062-?	NR	8E-9	(S_VLDL_TG)	0.07218766	NR unit increase	Illumina [609262]	N
604	chr6_ssto_hap7	2569888	2569889	rs34131062	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	6p21.33	MICB	rs34131062-?	NR	1E-8	(VLDL_TG)	0.0707539	NR unit increase	Illumina [609262]	N
604	chr6_ssto_hap7	2569945	2569946	rs2524096	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TXNDC15	5,352 Icelandic ancestry individuals	NA	6p21.33		rs2524096-T	0.3782	1E-49		0.267181	[0.23-0.3] unit decrease	Illumina [7506463] (imputed)	N
604	chr6_ssto_hap7	2570045	2570046	rs1049281	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI in non-smokers	75,379 European ancestry women, 45,811 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	6p21.33	HLA-C	rs1049281-C	0.653	2E-8		0.027	[0.017-0.037] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
604	chr6_ssto_hap7	2570045	2570046	rs1049281	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (joint analysis main effects and smoking interaction)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	6p21.33	HLA-C	rs1049281-C	0.652	2E-10				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
604	chr6_ssto_hap7	2570045	2570046	rs1049281	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	6p21.33	HLA-C	rs1049281-C	0.652	1E-18		0.026	[0.02-0.032] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
604	chr6_ssto_hap7	2570164	2570165	rs3207555	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	6p21.33	HLA-C	rs3207555-A	0.34675	4E-12		0.017413307	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
604	chr6_ssto_hap7	2570537	2570538	rs2894204	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	6p21.33	NA	rs2894204-T	0.6383	8E-25		0.0209	[0.017-0.025] unit increase	NR [~ 27400000] (imputed)	N
604	chr6_ssto_hap7	2570537	2570538	rs2894204	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	6p21.33	NR	rs2894204-T	0.6383	8E-25		0.0209	[0.017-0.025] unit increase	NR [~ 27400000] (imputed)	N
604	chr6_ssto_hap7	2571178	2571179	rs17886880	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs17886880-A	NR	1E-10		0.0204376	[0.014-0.027] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_ssto_hap7	2571178	2571179	rs17886880	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-C	rs17886880-A	NR	1E-9		0.0194517	[0.013-0.026] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_ssto_hap7	2571178	2571179	rs17886880	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs17886880-A	NR	2E-11		0.0214244	[0.015-0.028] unit decrease	Affymetrix [321016] (imputed)	N
604	chr6_ssto_hap7	2571251	2571252	rs1050118	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	121,047 East Asian ancestry individuals	NA	6p21.33	NR	rs1050118-C	0.759821	5E-17		0.039726	[0.03-0.049] SD units decrease	Affymetrix, Illumina [16286195] (imputed)	N
604	chr6_ssto_hap7	2571333	2571334	rs34794906	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-C	rs34794906-C	NR	7E-15		0.027207	[0.02-0.034] unit decrease	Affymetrix [323123] (imputed)	N
604	chr6_ssto_hap7	2571333	2571334	rs34794906	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	6p21.33	HLA-C	rs34794906-C	0.2643	2E-23		0.04089973	[0.033-0.049] unit increase	Affymetrix [~ 2500000] (imputed)	N
604	chr6_ssto_hap7	2571790	2571791	rs9264638	23417110	Tin A	2013-02-16	Hum Genet	Genome-wide association study identified the human leukocyte antigen region as a novel locus for plasma beta-2 microglobulin.	Beta-2 microglubulin plasma levels	6,728 European ancestry individuals		6p21.33	HLA-C	rs9264638-A	0.58	2E-23		0.04	[0.032-0.048] unit decrease	Affymetrix [2500000] (imputed)	N
604	chr6_ssto_hap7	2571794	2571795	rs9264639	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	6p21.33	HLA-C	rs9264639-C	0.8898	2E-8		5.601	NR z score decrease	Illumina [26237160] (imputed)	N
604	chr6_ssto_hap7	2571962	2571963	rs9264642	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-C	rs9264642-T	NR	7E-14		0.0238148	[0.018-0.03] unit decrease	Affymetrix [323858] (imputed)	N
604	chr6_ssto_hap7	2571962	2571963	rs9264642	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HLA-C	rs9264642-T	NR	4E-12		0.0220978	[0.016-0.028] unit decrease	Affymetrix [127266] (imputed)	N
604	chr6_ssto_hap7	2572521	2572522	rs1065406	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	6p21.33	HLA-C	rs1065406-T	0.026891	1E-10		0.048755113	[0.034-0.064] unit increase	Affymetrix [93095623] (imputed)	N
604	chr6_ssto_hap7	2572529	2572530	rs2308575	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	6p21.33		rs2308575-T	NR	1E-224		0.0839	[0.079-0.089] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
604	chr6_ssto_hap7	2572529	2572530	rs2308575	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	White blood cell count	8,825 African American individuals, 18,251 Hispanic/Latino individuals, 543 Asian ancestry individuals, 606 Native American ancestry individuals, 383 individuals	NA	6p21.33	NR	rs2308575-?	NR	9E-7		0.01349677	[0.0081-0.0189] unit increase	Illumina [30613845] (imputed)	N
604	chr6_ssto_hap7	2572700	2572701	rs9264664	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Adrenomedullin levels	21,758 European ancestry individuals	9,173 individuals	6p21.33		rs9264664-T	0.67	2E-12		0.0668	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
604	chr6_ssto_hap7	2572764	2572765	rs9264666	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs9264666-G	NR	6E-11		0.0183937	[0.013-0.024] unit increase	Affymetrix [321016] (imputed)	N
604	chr6_ssto_hap7	2572773	2572774	rs17879195	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-C	rs17879195-T	NR	3E-10		0.0253256	[0.017-0.033] unit decrease	Affymetrix [323123] (imputed)	N
604	chr6_ssto_hap7	2572898	2572899	rs41543814	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-C	rs41543814-T	NR	7E-11		0.0205232	[0.014-0.027] unit increase	Affymetrix [323858] (imputed)	N
604	chr6_ssto_hap7	2572898	2572899	rs41543814	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HLA-C	rs41543814-T	NR	7E-10		0.0194382	[0.013-0.026] unit increase	Affymetrix [127266] (imputed)	N
604	chr6_ssto_hap7	2572917	2572918	rs28626310	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs28626310-G	NR	4E-12		0.0245555	[0.018-0.031] unit decrease	Affymetrix [319769] (imputed)	N
604	chr6_ssto_hap7	2572917	2572918	rs28626310	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-C	rs28626310-G	NR	3E-11		0.0236059	[0.017-0.031] unit decrease	Affymetrix [319769] (imputed)	N
604	chr6_ssto_hap7	2572917	2572918	rs28626310	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HLA-C	rs28626310-G	NR	3E-10		0.0226589	[0.016-0.03] unit decrease	Affymetrix [321169] (imputed)	N
604	chr6_ssto_hap7	2572974	2572975	rs1050414	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Psoriasis vulgaris	206 East Asian ancestry cases, 172,289 East Asian ancestry controls	NA	6p21.33		rs1050414-G	0.029861158	6E-14		3.1940312	[2.36-4.03] unit increase	Illumina [13429050] (imputed)	N
604	chr6_ssto_hap7	2572986	2572987	rs1050420	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs1050420-T	NR	1E-11		0.0196904	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_ssto_hap7	2572986	2572987	rs1050420	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-C	rs1050420-T	NR	1E-10		0.0188138	[0.013-0.025] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_ssto_hap7	2572986	2572987	rs1050420	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs1050420-T	NR	2E-8		0.016265	[0.011-0.022] unit decrease	Affymetrix [321016] (imputed)	N
604	chr6_ssto_hap7	2572986	2572987	rs1050420	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8 on CD8+ T cell	3,113 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs1050420-T	0.57866	2E-15		0.2317	[0.18-0.29] unit increase	Illumina [18030777] (imputed)	N
604	chr6_ssto_hap7	2572986	2572987	rs1050420	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	6p21.33	HLA-C	rs1050420-T	0.371904	2E-15		0.020388147	[0.015-0.025] unit increase	Affymetrix [93095623] (imputed)	N
604	chr6_ssto_hap7	2573045	2573046	rs707911	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-C	rs707911-A	NR	1E-10		0.0201335	[0.014-0.026] unit decrease	Affymetrix [323858] (imputed)	N
604	chr6_ssto_hap7	2573045	2573046	rs707911	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HLA-C	rs707911-A	NR	2E-9		0.0186456	[0.013-0.025] unit decrease	Affymetrix [127266] (imputed)	N
604	chr6_ssto_hap7	2573045	2573046	rs707911	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-C	rs707911-A	NR	4E-19		0.027395	[0.021-0.033] unit increase	Affymetrix [323123] (imputed)	N
604	chr6_ssto_hap7	2573053	2573054	rs1050437	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gastric cancer	7,921 East Asian ancestry cases, 159,201 East Asian ancestry controls	NA	6p21.33		rs1050437-T	0.367701676	2E-10		0.1113395	[0.077-0.145] unit decrease	Illumina [13428249] (imputed)	N
604	chr6_ssto_hap7	2573289	2573290	rs2308527	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-C	rs2308527-G	NR	1E-10		0.0203077	[0.014-0.027] unit decrease	Affymetrix [323858] (imputed)	N
604	chr6_ssto_hap7	2573289	2573290	rs2308527	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HLA-C	rs2308527-G	NR	5E-9		0.0185054	[0.012-0.025] unit decrease	Affymetrix [127266] (imputed)	N
604	chr6_ssto_hap7	2573512	2573513	rs2524094	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GZMA	5,361 Icelandic ancestry individuals	NA	6p21.33		rs2524094-C	0.3792	4E-35		0.236005	[0.2-0.27] unit decrease	Illumina [7506463] (imputed)	N
604	chr6_ssto_hap7	2573512	2573513	rs2524094	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-C	rs2524094-C	NR	6E-17		0.0258625	[0.02-0.032] unit increase	Affymetrix [323123] (imputed)	N
604	chr6_ssto_hap7	2573531	2573532	rs2844622	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs2844622-A	NR	4E-23		0.0292963	[0.024-0.035] unit increase	Affymetrix [321016] (imputed)	N
604	chr6_ssto_hap7	2573894	2573895	rs2074488	23144326	Kim DK	2012-11-09	Am J Respir Crit Care Med	Genome-wide association analysis of blood biomarkers in chronic obstructive pulmonary disease.	Chronic obstructive pulmonary disease-related biomarkers	Up to 1,951 European ancestry smokers	NA	6p21.33	HLA-C	rs2074488-T	0.13	2E-10	(SP-D)			Illumina [588352]	N
604	chr6_ssto_hap7	2573942	2573943	rs9357121	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.33		rs9357121-T	0.966	9E-15				Affymetrix [10369434] (imputed)	N
604	chr6_ssto_hap7	2573942	2573943	rs9357121	26582766	Lu X	2015-11-18	Circ Cardiovasc Genet	Genetic Susceptibility to Lipid Levels and Lipid Change Over Time and Risk of Incident Hyperlipidemia in Chinese Populations.	LDL cholesterol	8,344 Han Chinese ancestry individuals	14,739 Han Chinese ancestry individuals	6p21.33	HLA-C	rs9357121-T	0.85	3E-10		1.842	[1.25-2.43] unit increase	Affymetrix, Illumina [2573667] (imputed)	N
604	chr6_ssto_hap7	2573942	2573943	rs9357121	26582766	Lu X	2015-11-18	Circ Cardiovasc Genet	Genetic Susceptibility to Lipid Levels and Lipid Change Over Time and Risk of Incident Hyperlipidemia in Chinese Populations.	Cholesterol, total	8,344 Han Chinese ancestry individuals	14,739 Han Chinese ancestry individuals	6p21.33	HLA-C	rs9357121-T	0.85	2E-10		2.062	[1.42-2.71] unit increase	Affymetrix, Illumina [2573667] (imputed)	N
604	chr6_ssto_hap7	2574098	2574099	rs4361609	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	6p21.33	HLA-C, USP8P1	rs4361609-C	0.120687	1E-47		0.05005804	[0.043-0.057] unit decrease	Affymetrix [93095623] (imputed)	N
604	chr6_ssto_hap7	2574175	2574176	rs2249741	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs2249741-A	NR	1E-14		0.0216601	[0.016-0.027] unit decrease	Affymetrix [319769] (imputed)	N
604	chr6_ssto_hap7	2574175	2574176	rs2249741	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-C	rs2249741-A	NR	3E-13		0.0205289	[0.015-0.026] unit decrease	Affymetrix [319769] (imputed)	N
604	chr6_ssto_hap7	2574175	2574176	rs2249741	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs2249741-A	NR	1E-11		0.0190915	[0.014-0.025] unit increase	Affymetrix [321016] (imputed)	N
604	chr6_ssto_hap7	2574175	2574176	rs2249741	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HLA-C	rs2249741-A	NR	4E-13		0.0206435	[0.015-0.026] unit decrease	Affymetrix [321169] (imputed)	N
604	chr6_ssto_hap7	2574184	2574185	rs2249742	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large LDL	115,082 European ancestry individuals	NA	6p21.33		rs2249742-C	0.555622	3E-9		0.0244495	[0.016-0.033] unit decrease	NR [11722792] (imputed)	N
604	chr6_ssto_hap7	2574184	2574185	rs2249742	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in LDL	115,082 European ancestry individuals	NA	6p21.33		rs2249742-C	0.555622	2E-9		0.0247133	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
604	chr6_ssto_hap7	2574184	2574185	rs2249742	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large LDL	115,082 European ancestry individuals	NA	6p21.33		rs2249742-C	0.555622	2E-8		0.0230779	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
604	chr6_ssto_hap7	2574184	2574185	rs2249742	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in LDL	115,082 European ancestry individuals	NA	6p21.33		rs2249742-C	0.555622	2E-8		0.0234686	[0.015-0.032] unit decrease	NR [11722792] (imputed)	N
604	chr6_ssto_hap7	2574184	2574185	rs2249742	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	LDL cholesterol levels	115,082 European ancestry individuals	NA	6p21.33		rs2249742-C	0.555622	3E-9		0.0245814	[0.016-0.033] unit decrease	NR [11722792] (imputed)	N
604	chr6_ssto_hap7	2574184	2574185	rs2249742	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large LDL	115,082 European ancestry individuals	NA	6p21.33		rs2249742-C	0.555622	8E-10		0.025273	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
604	chr6_ssto_hap7	2574184	2574185	rs2249742	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large LDL	115,082 European ancestry individuals	NA	6p21.33		rs2249742-C	0.555622	4E-9		0.0242248	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
604	chr6_ssto_hap7	2574184	2574185	rs2249742	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs2249742-C	0.559	5E-180				Affymetrix [10369434] (imputed)	N
604	chr6_ssto_hap7	2574184	2574185	rs2249742	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p21.33	HLA-C, USP8P1	rs2249742-T	0.441322	3E-27		0.03629834	[0.03-0.043] unit increase	Affymetrix [93095623] (imputed)	N
604	chr6_ssto_hap7	2574184	2574185	rs2249742	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	6p21.33	HLA-C, USP8P1	rs2249742-T	0.441347	6E-25		0.026632145	[0.022-0.032] unit increase	Affymetrix [93095623] (imputed)	N
604	chr6_ssto_hap7	2574184	2574185	rs2249742	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.33	HLA-C, USP8P1	rs2249742-T	0.441398	2E-70		0.049990416	[0.044-0.056] unit increase	Affymetrix [93095623] (imputed)	N
604	chr6_ssto_hap7	2574184	2574185	rs2249742	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	6p21.33	NR	rs2249742-T	0.448909	4E-405		0.079592	[0.076-0.083] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
604	chr6_ssto_hap7	2574184	2574185	rs2249742	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p21.33	NR	rs2249742-T	0.465758	6E-421				Affymetrix, Illumina [23472807] (imputed)	N
604	chr6_ssto_hap7	2574184	2574185	rs2249742	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	White blood cell count	8,825 African American individuals, 18,251 Hispanic/Latino individuals, 543 Asian ancestry individuals, 606 Native American ancestry individuals, 383 individuals	NA	6p21.33	NR	rs2249742-?	NR	2E-7		0.01238585	[0.0077-0.0171] unit increase	Illumina [30613845] (imputed)	N
604	chr6_ssto_hap7	2574184	2574185	rs2249742	28158719	Jain D	2017-02-01	Hum Mol Genet	Genome-wide association of white blood cell counts in Hispanic/Latino Americans: the Hispanic Community Health Study/Study of Latinos.	White blood cell count (lymphocyte)	up to 11,809 Hispanic/Latino American individuals	up to 7,200 Hispanic/Latino American individuals	6p21.33	HLA-C	rs2249742-C	0.486	4E-8		0.0219	[0.014-0.03] unit decrease	Illumina [27887661] (imputed)	N
604	chr6_ssto_hap7	2574184	2574185	rs2249742	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	6p21.33	HLA-C, USP8P1	rs2249742-T	0.4405	5E-71		0.06448932	[0.057-0.072] unit increase	Affymetrix [~ 2500000] (imputed)	N
604	chr6_ssto_hap7	2574335	2574336	rs9264681	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs9264681-C	NR	1E-13		0.0225581	[0.017-0.029] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_ssto_hap7	2574335	2574336	rs9264681	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-C	rs9264681-C	NR	3E-13		0.0223033	[0.016-0.028] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_ssto_hap7	2574335	2574336	rs9264681	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-C	rs9264681-C	NR	2E-11		0.0221737	[0.016-0.029] unit decrease	Affymetrix [323123] (imputed)	N
604	chr6_ssto_hap7	2574335	2574336	rs9264681	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HLA-C	rs9264681-C	NR	4E-10		0.0192801	[0.013-0.025] unit increase	Affymetrix [321169] (imputed)	N
604	chr6_ssto_hap7	2574495	2574496	rs5010528	28062682	Carr DF	2017-01-05	J Antimicrob Chemother	Genome-wide association study of nevirapine hypersensitivity in a sub-Saharan African HIV-infected population.	Nevirapine-induced hypersensitivity in HIV (Stevens-Johnson syndrome or toxic epidermal necrosis)	51 Sub-saharan African ancestry cases, 182 Sub-saharan African ancestry controls	11 Sub-Saharan African ancestry cases, 27 African ancestry cases, 60 Sub-Saharan African ancestry controls, 8 African ancestry controls	6p21.33	HLA-C	rs5010528-G	0.14	8E-8		4.84	[2.71-8.61]	Illumina [14218511] (imputed)	N
604	chr6_ssto_hap7	2574554	2574555	rs2523599	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs2523599-C	NR	1E-21		0.0275701	[0.022-0.033] unit decrease	Affymetrix [319769] (imputed)	N
604	chr6_ssto_hap7	2574554	2574555	rs2523599	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-C	rs2523599-C	NR	7E-20		0.0263436	[0.021-0.032] unit decrease	Affymetrix [319769] (imputed)	N
604	chr6_ssto_hap7	2574554	2574555	rs2523599	33608531	Wu Y	2021-02-19	Nat Commun	GWAS of peptic ulcer disease implicates Helicobacter pylori infection, other gastrointestinal disorders and depression.	Irritable bowel syndrome	28,518 European ancestry cases, 426,803 European ancestry controls	NA	6p21.33	HLA-C	rs2523599-C	0.39	4E-8		0.95		NR [8546065] (imputed)	N
604	chr6_ssto_hap7	2574571	2574572	rs13191343	20953186	Huffmeier U	2010-10-17	Nat Genet	Common variants at TRAF3IP2 are associated with susceptibility to psoriatic arthritis and psoriasis.	Psoriatic arthritis	572 European ancestry cases, 888 European ancestry controls	Up to 1,761 European ancestry cases, 3,727 European ancestry controls	6p21.33	HLA-C	rs13191343-T	0.13	2E-72		2.37	[2.16-2.61]	Affymetrix [1585307] (imputed)	N
604	chr6_ssto_hap7	2574644	2574645	rs6900444	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs6900444-T	NR	4E-11		0.0186301	[0.013-0.024] unit decrease	Affymetrix [321016] (imputed)	N
604	chr6_ssto_hap7	2574644	2574645	rs6900444	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-C	rs6900444-T	NR	2E-15		0.0243915	[0.018-0.03] unit decrease	Affymetrix [323123] (imputed)	N
604	chr6_ssto_hap7	2574644	2574645	rs6900444	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	6p21.33	RNU6-283P	rs6900444-?	NR	1E-38		0.0342	[0.029-0.039] unit increase	Affymetrix [5701386] (imputed)	N
604	chr6_ssto_hap7	2574732	2574733	rs6900323	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-C	rs6900323-G	NR	3E-10		0.022084	[0.015-0.029] unit decrease	Affymetrix [319769] (imputed)	N
604	chr6_ssto_hap7	2574732	2574733	rs6900323	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-C	rs6900323-G	NR	2E-9		0.0211782	[0.014-0.028] unit decrease	Affymetrix [319769] (imputed)	N
604	chr6_ssto_hap7	2574732	2574733	rs6900323	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-C	rs6900323-G	NR	2E-8		0.0215495	[0.014-0.029] unit increase	Affymetrix [323123] (imputed)	N
604	chr6_ssto_hap7	2575101	2575102	rs2524084	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	151,807 East Asian ancestry individuals	NA	6p21.33	NR	rs2524084-A	0.427051	1E-53		0.056526	[0.049-0.064] SD units increase	Affymetrix, Illumina [16710636] (imputed)	N
604	chr6_ssto_hap7	2575101	2575102	rs2524084	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	88,929 East Asian ancestry individuals	NA	6p21.33	NR	rs2524084-A	0.42316	2E-35		0.059309	[0.05-0.069] SD units increase	Affymetrix, Illumina [16289044] (imputed)	N
604	chr6_ssto_hap7	2575101	2575102	rs2524084	31375628	Tengvall K	2019-08-02	Proc Natl Acad Sci U S A	Molecular mimicry between Anoctamin 2 and Epstein-Barr virus nuclear antigen 1 associates with multiple sclerosis risk.	Anti-anoctamin 2 antibody levels	11,936 European ancestry individuals	NA	6p21.33	NR	rs2524084-G	NR	3E-6		0.048	[0.024-0.072] unit decrease	Illumina [615763]	N
604	chr6_ssto_hap7	2575223	2575224	rs2524082	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	6p21.33	HLA-C, USP8P1	rs2524082-T	0.56	4E-65		0.06130488	[0.054-0.068] unit decrease	Affymetrix [~ 2500000] (imputed)	N
604	chr6_ssto_hap7	2575521	2575522	rs7764413	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	USP8P1	rs7764413-C	NR	8E-11		0.0182807	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_ssto_hap7	2575521	2575522	rs7764413	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	USP8P1	rs7764413-C	NR	1E-9		0.0172073	[0.012-0.023] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_ssto_hap7	2575521	2575522	rs7764413	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p21.33	NR	rs7764413-C	0.463	2E-6	(IFNalpha_STAT1_of_CD8p_T)			Illumina [5084123] (imputed)	N
604	chr6_ssto_hap7	2575522	2575523	rs2524081	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p21.33	HLA-C	rs2524081-C		2E-19		0.03	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
604	chr6_ssto_hap7	2575522	2575523	rs2524081	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	6p21.33	HLA-C, USP8P1	rs2524081-C	0.1374	5E-11		0.03378154	[0.024-0.044] unit decrease	Affymetrix [~ 2500000] (imputed)	N
604	chr6_ssto_hap7	2575590	2575591	rs2844620	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	USP8P1	rs2844620-C	NR	4E-19		0.0254568	[0.02-0.031] unit decrease	Affymetrix [319769] (imputed)	N
604	chr6_ssto_hap7	2575590	2575591	rs2844620	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	USP8P1	rs2844620-C	NR	4E-11		0.0208679	[0.015-0.027] unit decrease	Affymetrix [323858] (imputed)	N
604	chr6_ssto_hap7	2575590	2575591	rs2844620	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	USP8P1	rs2844620-C	NR	3E-18		0.0247749	[0.019-0.03] unit decrease	Affymetrix [319769] (imputed)	N
604	chr6_ssto_hap7	2575590	2575591	rs2844620	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	USP8P1	rs2844620-C	NR	5E-10		0.0196514	[0.013-0.026] unit decrease	Affymetrix [127266] (imputed)	N
604	chr6_ssto_hap7	2575590	2575591	rs2844620	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	USP8P1	rs2844620-C	NR	9E-17		0.0239546	[0.018-0.03] unit decrease	Affymetrix [321169] (imputed)	N
604	chr6_ssto_hap7	2575613	2575614	rs2524079	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	6p21.33		rs2524079-A	NR	9E-270		0.0717	[0.068-0.076] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
604	chr6_ssto_hap7	2575613	2575614	rs2524079	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	82,810 East Asian ancestry individuals	NA	6p21.33		rs2524079-A	0.271529	6E-32		0.0612891	[0.051-0.072] unit increase	Illumina [13467171] (imputed)	N
604	chr6_ssto_hap7	2575613	2575614	rs2524079	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	6p21.33		rs2524079-A	NR	3E-162		0.0594	[0.055-0.064] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
604	chr6_ssto_hap7	2575613	2575614	rs2524079	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.33		rs2524079-G	0.583	4E-109				Affymetrix [10369434] (imputed)	N
604	chr6_ssto_hap7	2575613	2575614	rs2524079	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p21.33		rs2524079-G	0.583	2E-76				Affymetrix [10369434] (imputed)	N
604	chr6_ssto_hap7	2575613	2575614	rs2524079	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (lymphocyte)	21,347 Hispanic or Latin American individuals	NA	6p21.33		rs2524079-A	0.5566	1E-8		0.0648	[0.042-0.087] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
604	chr6_ssto_hap7	2575613	2575614	rs2524079	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	21,347 Hispanic or Latin American individuals	NA	6p21.33		rs2524079-A	0.5537	3E-10		0.0627	[0.043-0.082] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
604	chr6_ssto_hap7	2575613	2575614	rs2524079	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	USP8P1	rs2524079-A	NR	6E-11		0.0186395	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_ssto_hap7	2575613	2575614	rs2524079	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	USP8P1	rs2524079-A	NR	4E-10		0.0178594	[0.012-0.023] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_ssto_hap7	2575613	2575614	rs2524079	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	USP8P1	rs2524079-A	NR	7E-9		0.0164819	[0.011-0.022] unit decrease	Affymetrix [321016] (imputed)	N
604	chr6_ssto_hap7	2575613	2575614	rs2524079	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	USP8P1	rs2524079-A	NR	1E-9		0.0175752	[0.012-0.023] unit increase	Affymetrix [321169] (imputed)	N
604	chr6_ssto_hap7	2575613	2575614	rs2524079	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	6p21.33	HLA-C, USP8P1	rs2524079-A	0.417269	1E-31		0.027049404	[0.023-0.032] unit increase	Affymetrix [93095623] (imputed)	N
604	chr6_ssto_hap7	2575613	2575614	rs2524079	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p21.33	NR	rs2524079-A	0.398304	1E-51				Affymetrix, Illumina [19905671] (imputed)	N
604	chr6_ssto_hap7	2575613	2575614	rs2524079	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	6p21.33	NR	rs2524079-A	0.419059	5E-51		0.031209	[0.027-0.035] SD unit increase	Affymetrix, Illumina [50036608] (imputed)	N
604	chr6_ssto_hap7	2575613	2575614	rs2524079	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	White blood cell count	8,825 African American individuals, 18,251 Hispanic/Latino individuals, 543 Asian ancestry individuals, 606 Native American ancestry individuals, 383 individuals	NA	6p21.33	NR	rs2524079-?	NR	1E-9		0.01475699	[0.01-0.019] unit increase	Illumina [30613845] (imputed)	N
604	chr6_ssto_hap7	2575613	2575614	rs2524079	28158719	Jain D	2017-02-01	Hum Mol Genet	Genome-wide association of white blood cell counts in Hispanic/Latino Americans: the Hispanic Community Health Study/Study of Latinos.	White blood cell count (lymphocyte)	up to 11,809 Hispanic/Latino American individuals	up to 7,200 Hispanic/Latino American individuals	6p21.33	NR	rs2524079-A	0.56	2E-8		0.016	[0.01-0.022] unit increase	Illumina [27887661] (imputed)	N
604	chr6_ssto_hap7	2575613	2575614	rs2524079	28158719	Jain D	2017-02-01	Hum Mol Genet	Genome-wide association of white blood cell counts in Hispanic/Latino Americans: the Hispanic Community Health Study/Study of Latinos.	White blood cell count	up to 11,809 Hispanic/Latino American individuals	up to 7,200 Hispanic/Latino American individuals	6p21.33	HLA-C	rs2524079-G	0.556	2E-8		0.213	[0.21-0.22] unit decrease	Illumina [27887661] (imputed)	N
604	chr6_ssto_hap7	2575613	2575614	rs2524079	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	6p21.33	HLA-C, USP8P1	rs2524079-A	0.4171	2E-126		0.08687249	[0.08-0.094] unit increase	Affymetrix [~ 2500000] (imputed)	N
604	chr6_ssto_hap7	2575613	2575614	rs2524079	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	6p21.33	HLA-C, USP8P1	rs2524079-A	0.4168	6E-68		0.06325533	[0.056-0.07] unit increase	Affymetrix [~ 2500000] (imputed)	N
604	chr6_ssto_hap7	2575613	2575614	rs2524079	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	6p21.33	HLA-C, USP8P1	rs2524079-A	0.4168	2E-68		0.06352314	[0.056-0.071] unit increase	Affymetrix [~ 2500000] (imputed)	N
604	chr6_ssto_hap7	2575613	2575614	rs2524079	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	6p21.33	HLA-C, USP8P1	rs2524079-A	0.4168	1E-67		0.0630379	[0.056-0.07] unit increase	Affymetrix [~ 2500000] (imputed)	N
604	chr6_ssto_hap7	2575613	2575614	rs2524079	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	6p21.33	HLA-C, USP8P1	rs2524079-A	0.4168	9E-69		0.06375719	[0.057-0.071] unit increase	Affymetrix [~ 2500000] (imputed)	N
604	chr6_ssto_hap7	2575613	2575614	rs2524079	21738480	Nalls MA	2011-07-01	PLoS Genet	Multiple loci are associated with white blood cell phenotypes.	White blood cell count	19,509 European ancestry individuals	11,823 European ancestry individuals	6p21.33	PSORS1C3, HCG27, HLA-C, HLA-B	rs2524079-A		1E-11	(Lymphocytes)	0.0148	[0.010-0.019] unit increase	Affymetrix, Illumina [> 2400000] (imputed)	N
604	chr6_ssto_hap7	2575630	2575631	rs12111032	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p21.33	HLA-C, HLA-B	rs12111032-G	0.24	1E-9	(EA)	2.32	[1.76-3.06]	Illumina [up to 547389]	N
604	chr6_ssto_hap7	2575662	2575663	rs2844619	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	USP8P1	rs2844619-C	NR	4E-24		0.0293712	[0.024-0.035] unit decrease	Affymetrix [319769] (imputed)	N
604	chr6_ssto_hap7	2575662	2575663	rs2844619	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	USP8P1	rs2844619-C	NR	8E-22		0.0278547	[0.022-0.034] unit decrease	Affymetrix [319769] (imputed)	N
604	chr6_ssto_hap7	2575662	2575663	rs2844619	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	USP8P1	rs2844619-C	NR	7E-20		0.0267656	[0.021-0.033] unit decrease	Affymetrix [321169] (imputed)	N
604	chr6_ssto_hap7	2575948	2575949	rs35989257	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	USP8P1	rs35989257-T	NR	6E-9		0.0198497	[0.013-0.027] unit decrease	Affymetrix [323123] (imputed)	N
604	chr6_ssto_hap7	2575948	2575949	rs35989257	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	USP8P1	rs35989257-T	NR	3E-9		0.0189318	[0.013-0.025] unit increase	Affymetrix [321169] (imputed)	N
604	chr6_ssto_hap7	2576078	2576079	rs2844616	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	USP8P1	rs2844616-C	NR	5E-17		0.0240156	[0.018-0.03] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_ssto_hap7	2576078	2576079	rs2844616	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	USP8P1	rs2844616-C	NR	3E-16		0.0233918	[0.018-0.029] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_ssto_hap7	2576078	2576079	rs2844616	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	6p21.33	USP8P1	rs2844616-C	NR	2E-9		0.0194652	[0.013-0.026] unit decrease	Affymetrix [323858] (imputed)	N
604	chr6_ssto_hap7	2576078	2576079	rs2844616	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	USP8P1	rs2844616-C	NR	7E-18		0.0267883	[0.021-0.033] unit decrease	Affymetrix [323123] (imputed)	N
604	chr6_ssto_hap7	2576170	2576171	rs12199223	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CD8A	5,365 Icelandic ancestry individuals	NA	6p21.33		rs12199223-A	0.08655	2E-61		0.542037	[0.48-0.61] unit increase	Illumina [7506463] (imputed)	N
604	chr6_ssto_hap7	2576170	2576171	rs12199223	30921485	Bejaoui Y	2019-03-28	Exp Dermatol	Genome-wide association study of psoriasis in an Egyptian population.	Psoriasis	215 Egyptian ancestry cases, 416 Egyptian ancestry controls	321 Egyptian ancestry cases, 253 Egyptian ancestry controls	6p21.33	HLA-C	rs12199223-?	NR	7E-18		2.49	[2.01-3.1]	Illumina [312245]	N
604	chr6_ssto_hap7	2576201	2576202	rs3134745	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	6p21.33	HLA-C, USP8P1	rs3134745-T	0.325625	5E-10		0.01714023	[0.012-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
604	chr6_ssto_hap7	2576786	2576787	rs9461680	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6p21.33		rs9461680-C	0.825202	3E-9		0.0310951	[0.021-0.041] unit increase	NR [11722792] (imputed)	N
604	chr6_ssto_hap7	2576786	2576787	rs9461680	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	6p21.33		rs9461680-C	0.825202	9E-11		0.032856	[0.023-0.043] unit increase	NR [11722792] (imputed)	N
604	chr6_ssto_hap7	2576798	2576799	rs9468911	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6p21.33		rs9468911-G	0.825215	1E-11		0.0349605	[0.025-0.045] unit decrease	NR [11722792] (imputed)	N
604	chr6_ssto_hap7	2576798	2576799	rs9468911	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6p21.33		rs9468911-G	0.825215	8E-12		0.0354702	[0.025-0.046] unit increase	NR [11722792] (imputed)	N
604	chr6_ssto_hap7	2577017	2577018	rs73390981	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	6p21.33		rs73390981-G	0.922	1E-33				Affymetrix [10369434] (imputed)	N
604	chr6_ssto_hap7	2577017	2577018	rs73390981	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	6p21.33	USP8P1	rs73390981-A	0.078064	3E-29		0.049712982	[0.041-0.058] unit increase	Affymetrix [93095623] (imputed)	N
604	chr6_ssto_hap7	2577054	2577055	rs13200569	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	6p21.33	USP8P1	rs13200569-A	0.285539	7E-13		0.01938597	[0.014-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
604	chr6_ssto_hap7	2577267	2577268	rs4141168	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	6p21.33		rs4141168-A	0.786459	2E-8		0.0267074	[0.017-0.036] unit increase	NR [11722792] (imputed)	N
604	chr6_ssto_hap7	2577269	2577270	rs2524076	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	USP8P1	rs2524076-G	NR	2E-14		0.0235806	[0.018-0.03] unit increase	Affymetrix [323123] (imputed)	N
604	chr6_ssto_hap7	2577269	2577270	rs2524076	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	USP8P1	rs2524076-G	NR	4E-15		0.0225429	[0.017-0.028] unit decrease	Affymetrix [321169] (imputed)	N
604	chr6_ssto_hap7	2577323	2577324	rs3130696	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	6p21.33	MICB	rs3130696-?	NR	5E-10	(XS_VLDL_TG)	0.06374044	NR unit decrease	Illumina [609262]	N
604	chr6_ssto_hap7	2577323	2577324	rs3130696	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	6p21.33	MICB	rs3130696-?	NR	3E-6	(XS_VLDL_TG)	0.059096735	NR unit decrease	Illumina [609262]	N
604	chr6_ssto_hap7	2577334	2577335	rs3094680	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	6p21.33	HLA	rs3094680-T	0.601913	1E-8		1.05	[1.03-1.06]	NR [8126035] (imputed)	N
604	chr6_ssto_hap7	2578229	2578230	rs2524069	27327535	Laville V	2016-06-21	Pigment Cell Melanoma Res	A genome-wide association study in Caucasian women suggests the involvement of HLA genes in the severity of facial solar lentigines.	Severity of facial solar lentigines	502 French ancestry individuals		6p21.33	USP8P1, HLA-C	rs2524069-T	0.13	3E-7				Illumina [795063]	N
604	chr6_ssto_hap7	2578400	2578401	rs6919908	26007630	Swaminathan B	2015-05-26	Nat Commun	Variants in ELL2 influencing immunoglobulin levels associate with multiple myeloma.	Multiple myeloma and monoclonal gammopathy	2,194 European ancestry multiple myeloma cases, 251 European ancestry monoclonal gammopathy cases, 294,390 European ancestry controls	586 European ancestry multiple myeloma cases, 2,111 European ancestry controls	6p21.33	PSORS1C2, HLA	rs6919908-T	0.23	6E-10		0.23	[NR] unit increase	Illumina [12100000] (imputed)	N
604	chr6_ssto_hap7	2578400	2578401	rs6919908	26007630	Swaminathan B	2015-05-26	Nat Commun	Variants in ELL2 influencing immunoglobulin levels associate with multiple myeloma.	Multiple myeloma	2,194 European ancestry cases, 222,555 European ancestry controls	586 European ancestry cases, 2,111 European ancestry controls	6p21.33	PSORS1C2, HLA	rs6919908-T	0.23	4E-10		0.25	[NR] unit increase	Illumina [12100000] (imputed)	N
604	chr6_ssto_hap7	2579250	2579251	rs2524067	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p21.33	HLA-C, HLA-B	rs2524067-G	0.353	1E-25				Illumina [118177]	N
604	chr6_ssto_hap7	2580252	2580253	rs7383388	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6p21.33	RPL3P2	rs7383388-T	0.404081	1E-10		0.01745803	[0.012-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
604	chr6_ssto_hap7	2580632	2580633	rs2853946	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	USP8P1	rs2853946-T	NR	2E-9		0.0200045	[0.014-0.026] unit decrease	Affymetrix [323123] (imputed)	N
604	chr6_ssto_hap7	2580632	2580633	rs2853946	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	USP8P1	rs2853946-T	NR	5E-11		0.0201772	[0.014-0.026] unit increase	Affymetrix [321169] (imputed)	N
604	chr6_ssto_hap7	2580632	2580633	rs2853946	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	119,629 East Asian ancestry individuals	NA	6p21.33	NR	rs2853946-A	0.728288	8E-12		0.03126	[0.022-0.04] SD units decrease	Affymetrix, Illumina [16286228] (imputed)	N
604	chr6_ssto_hap7	2580632	2580633	rs2853946	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	White blood cell count	8,825 African American individuals, 18,251 Hispanic/Latino individuals, 543 Asian ancestry individuals, 606 Native American ancestry individuals, 383 individuals	NA	6p21.33	NR	rs2853946-?	NR	8E-7		0.0119414	[0.0072-0.0167] unit increase	Illumina [30613845] (imputed)	N
604	chr6_ssto_hap7	2580632	2580633	rs2853946	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.33	USP8P1	rs2853946-A	0.6837	8E-12		0.0519	[0.037-0.067] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
604	chr6_ssto_hap7	2580632	2580633	rs2853946	25096241	Keller MF	2014-08-05	Hum Mol Genet	Trans-ethnic meta-analysis of white blood cell phenotypes.	White blood cell count	16,843 Japanese ancestry individuals, 19,509 European ancestry individuals, 16,388 African American individuals	NA	6p21.33	HLA-B	rs2853946-A	0.717	8E-6	(Japanese)	0.013	[0.0071-0.0189] unit decrease	Illumina [NR] (imputed)	N
604	chr6_ssto_hap7	2580632	2580633	rs2853946	25096241	Keller MF	2014-08-05	Hum Mol Genet	Trans-ethnic meta-analysis of white blood cell phenotypes.	White blood cell count	16,843 Japanese ancestry individuals, 19,509 European ancestry individuals, 16,388 African American individuals	NA	6p21.33	HLA-B	rs2853946-A	0.348	1E-8	(EA)	0.017	[0.011-0.023] unit decrease	Illumina [NR] (imputed)	N
604	chr6_ssto_hap7	2580632	2580633	rs2853946	25096241	Keller MF	2014-08-05	Hum Mol Genet	Trans-ethnic meta-analysis of white blood cell phenotypes.	White blood cell count	16,843 Japanese ancestry individuals, 19,509 European ancestry individuals, 16,388 African American individuals	NA	6p21.33	HLA-B	rs2853946-?	NR	3E-14		0.0139	[0.010-0.017] unit decrease	Illumina [NR] (imputed)	N
604	chr6_ssto_hap7	2580835	2580836	rs112262437	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.33	NR	rs112262437-C	0.994	2E-27	(conditional)	6.006	[5.68-6.33]	Illumina [11270530] (imputed)	N
604	chr6_ssto_hap7	2580843	2580844	rs2844608	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	RPL3P2	rs2844608-T	NR	3E-19		0.0260453	[0.02-0.032] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_ssto_hap7	2580843	2580844	rs2844608	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	RPL3P2	rs2844608-T	NR	2E-18		0.0254038	[0.02-0.031] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_ssto_hap7	2580843	2580844	rs2844608	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4 on CD28+ CD4+ T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs2844608-T	0.45698	9E-10		0.1884	[0.13-0.25] unit increase	Illumina [17954496] (imputed)	N
604	chr6_ssto_hap7	2581300	2581301	rs2853943	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	RPL3P2	rs2853943-C	NR	2E-12		0.0232178	[0.017-0.03] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_ssto_hap7	2581300	2581301	rs2853943	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	RPL3P2	rs2853943-C	NR	3E-12		0.0229712	[0.017-0.029] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_ssto_hap7	2581861	2581862	rs2844606	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	RPL3P2	rs2844606-G	NR	2E-9		0.0190067	[0.013-0.025] unit increase	Affymetrix [323858] (imputed)	N
604	chr6_ssto_hap7	2581861	2581862	rs2844606	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	RPL3P2	rs2844606-G	NR	5E-8		0.017266	[0.011-0.023] unit increase	Affymetrix [127266] (imputed)	N
604	chr6_ssto_hap7	2581861	2581862	rs2844606	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	RPL3P2	rs2844606-G	NR	1E-13		0.021298	[0.016-0.027] unit increase	Affymetrix [321169] (imputed)	N
604	chr6_ssto_hap7	2581861	2581862	rs2844606	33204752	Butler-Laporte G	2020-09-24	Open Forum Infect Dis	Genetic Determinants of Antibody-Mediated Immune Responses to Infectious Diseases Agents: A Genome-Wide and HLA Association Study.	Anti-human herpes virus 6 IE1A IgG seropositivity	8,735 White British ancestry individuals	NA	6p21.33	RPL3P2	rs2844606-A	0.584	1E-8		0.1	unit decrease	NR [25472218] (imputed)	N
604	chr6_ssto_hap7	2581861	2581862	rs2844606	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	6p21.33	RPL3P2	rs2844606-G	0.417187	3E-23		0.025892606	[0.021-0.031] unit increase	Affymetrix [93095623] (imputed)	N
604	chr6_ssto_hap7	2581863	2581864	rs9264758	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p21.33	HLA-C	rs9264758-G	0.866	3E-7		0.082	[0.051-0.113] unit increase	Affymetrix, Illumina [7374092] (imputed)	N
604	chr6_ssto_hap7	2582020	2582021	rs2844605	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	RPL3P2	rs2844605-C	NR	7E-16		0.0250208	[0.019-0.031] unit decrease	Affymetrix [323123] (imputed)	N
604	chr6_ssto_hap7	2582107	2582108	rs9264759	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	93,063 East Asian ancestry individuals	NA	6p21.33		rs9264759-C	0.695944	2E-40		0.0639223	[0.055-0.073] unit decrease	Illumina [13470073] (imputed)	N
604	chr6_ssto_hap7	2582655	2582656	rs2853941	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	RPL3P2	rs2853941-C	NR	1E-9		0.0174735	[0.012-0.023] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_ssto_hap7	2582824	2582825	rs9264764	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	RPL3P2	rs9264764-C	NR	4E-9		0.0168291	[0.011-0.022] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_ssto_hap7	2583019	2583020	rs7766089	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	RPL3P2	rs7766089-G	NR	5E-19		0.0281143	[0.022-0.034] unit increase	Affymetrix [323123] (imputed)	N
604	chr6_ssto_hap7	2583019	2583020	rs7766089	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	RPL3P2	rs7766089-G	NR	2E-20		0.0271218	[0.021-0.033] unit decrease	Affymetrix [321169] (imputed)	N
604	chr6_ssto_hap7	2583158	2583159	rs2853940	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gastric cancer	1,029 European ancestry cases, 475,087 European ancestry controls, 7,921 East Asian ancestry cases, 159,201 East Asian ancestry controls	NA	6p21.33		rs2853940-C	NR	8E-12		0.1087	[0.078-0.14] unit increase	Affymetrix, Illumina [25843697] (imputed)	N
604	chr6_ssto_hap7	2583158	2583159	rs2853940	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	RPL3P2	rs2853940-C	NR	3E-17		0.0246751	[0.019-0.03] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_ssto_hap7	2583158	2583159	rs2853940	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	RPL3P2	rs2853940-C	NR	4E-16		0.0237957	[0.018-0.03] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_ssto_hap7	2584359	2584360	rs2853939	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	RPL3P2	rs2853939-T	NR	2E-28		0.033269	[0.027-0.039] unit increase	Affymetrix [323123] (imputed)	N
604	chr6_ssto_hap7	2586113	2586114	rs2524054	20045101	Ferreira MA	2009-12-31	Am J Hum Genet	Quantitative trait loci for CD4:CD8 lymphocyte ratio are associated with risk of type 1 diabetes and HIV-1 immune control.	CD8-positive T-lymphocyte count	2,538 European ancestry twins from 1,089 families	988 individuals from 550 families	6p21.33	HLA-B	rs2524054-A	0.32	6E-21		0.37	[0.31-0.43] SD increase	Illumina [529721]	N
604	chr6_ssto_hap7	2586113	2586114	rs2524054	20045101	Ferreira MA	2009-12-31	Am J Hum Genet	Quantitative trait loci for CD4:CD8 lymphocyte ratio are associated with risk of type 1 diabetes and HIV-1 immune control.	CD4:CD8 lymphocyte ratio	2,538 European ancestry twins from 1,089 families	988 individuals from 550 families	6p21.33	HLA-B	rs2524054-A	0.32	2E-28		0.37	[0.31-0.43] SD increase	Illumina [529721]	N
604	chr6_ssto_hap7	2586642	2586643	rs12191877	26626624	Stuart PE	2015-11-28	Am J Hum Genet	Genome-wide Association Analysis of Psoriatic Arthritis and Cutaneous Psoriasis Reveals Differences in Their Genetic Architecture.	Psoriatic arthritis	1,946 European ancestry cases, 4,934 European ancestry controls	up to 2,883 European ancestry cases, up to 14,179 European ancestry controls		HLA-C, HLA-B, HLA, MHC	rs12191877-T	NR	2E-99		2.416	NR	Illumina [11532644] (imputed)	N
604	chr6_ssto_hap7	2586642	2586643	rs12191877	20953188	Ellinghaus E	2010-10-17	Nat Genet	Genome-wide association study identifies a psoriasis susceptibility locus at TRAF3IP2.	Psoriasis	472 European ancestry cases, 1,146 European ancestry controls	2,668, European ancestry cases, 762 French Canadian founder population cases, 2,585 cases, 3,485 European ancestry controls, 994 French Canadian founder population controls, 2,412 controls		HLA-C	rs12191877-?	NR	4E-32		2.79	[2.35-3.33]	Illumina [2339118] (imputed)	N
604	chr6_ssto_hap7	2586642	2586643	rs12191877	19169254	Nair RP	2009-01-25	Nat Genet	Genome-wide scan reveals association of psoriasis with IL-23 and NF-kappaB pathways.	Psoriasis	1,359 European ancestry cases, 1,400 European ancestry controls	5,048 European ancestry cases, 5,041 European ancestry controls		HLA-C	rs12191877-T	0.15	1E-100		2.64	[NR]	Perlegen [~ 2500000] (imputed)	N
604	chr6_ssto_hap7	2587804	2587805	rs2853933	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	WASF5P	rs2853933-T	NR	5E-17		0.0264491	[0.02-0.033] unit decrease	Affymetrix [323858] (imputed)	N
604	chr6_ssto_hap7	2587804	2587805	rs2853933	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	WASF5P	rs2853933-T	NR	5E-15		0.0246973	[0.019-0.031] unit decrease	Affymetrix [127266] (imputed)	N
604	chr6_ssto_hap7	2588721	2588722	rs13214872	33385400	Patrick MT	2020-12-29	J Invest Dermatol	Causal relationship and shared genetic loci between psoriasis and type 2 diabetes through trans-disease meta-analysis.	Psoriasis or type 2 diabetes (trans-disease meta-analysis)	11,024 European ancestry psoriasis cases, 74,124 European ancestry diabetes cases, 840,342 European ancestry controls	NA		NR	rs13214872-G	NR	2E-302		1.67	NR	NR [8016731] (imputed)	N
604	chr6_ssto_hap7	2589154	2589155	rs114598080	32421744	Gzara C	2020-05-18	PLoS Pathog	Family-based genome-wide association study of leprosy in Vietnam.	Leprosy	1,749 Vietnamese ancestry cases	1,181 Vietnamese ancestry cases, 688 Vietnamese ancestry controls	6p21.33	HLA-C	rs114598080-A	0.1	9E-13		1.47	[1.46-1.48]	Illumina [5607170] (imputed)	N
604	chr6_ssto_hap7	2591221	2591222	rs2853928	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for VLDL particles	115,082 European ancestry individuals	NA	6p21.33		rs2853928-A	0.298678	8E-11		0.0272348	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
604	chr6_ssto_hap7	2591221	2591222	rs2853928	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	HLA-C, WASF5P, XXbac-BPG248L24.13, HLA-B, XXbac-BPG248L24.12, USP8P1, RPL3P2, XXbac-BPG248L24.10, MIR6891	rs2853928-A	0.2253521	3E-12	(EA, Granzyme A)	0.3627	[0.26-0.46] unit decrease	Affymetrix [509946]	N
604	chr6_ssto_hap7	2592100	2592101	rs2844594	34785669	Grosche S	2021-11-16	Nat Commun	Rare variant analysis in eczema identifies exonic variants in DUSP1, NOTCH4 and SLC9A4.	Eczema	20,016 European ancestry cases, 380,433 European ancestry controls	NA	6p21.33		rs2844594-A	0.1766	3E-14		1.12		Affymetrix, Illumina [9397031] (imputed)	N
604	chr6_ssto_hap7	2592100	2592101	rs2844594	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HVEM on naive CD8+ T cell	1,247 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs2844594-A	0.38517	2E-10		0.276	[0.19-0.36] unit decrease	Illumina [16410374] (imputed)	N
604	chr6_ssto_hap7	2592545	2592546	rs9468925	20526339	Quan C	2010-06-06	Nat Genet	Genome-wide association study for vitiligo identifies susceptibility loci at 6q27 and the MHC.	Vitiligo	1,117 Han Chinese ancestry cases, 1,429 Han Chinese ancestry controls	6,623 East Asian ancestry cases, 10,740 East Asian ancestry controls	6p21.33	HLA	rs9468925-?	0.617	2E-33		1.35	[1.28-1.41]	Illumina [493909]	N
604	chr6_ssto_hap7	2593279	2593280	rs2524163	27286809	Ligthart S	2016-06-10	BMC Genomics	Bivariate genome-wide association study identifies novel pleiotropic loci for lipids and inflammation.	C-reactive protein levels or triglyceride levels (pleiotropy)	65,000 individuals (C-reactive protein), 96,598 individuals (triglycerides)	NA	6p21.33	HLA-C	rs2524163-T	NR	8E-10				NR [25015711] (imputed)	N
604	chr6_ssto_hap7	2593828	2593829	rs115464798	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	6p21.33	WASF5P	rs115464798-A	0.056192	5E-21		0.049840536	[0.039-0.06] unit decrease	Affymetrix [93095623] (imputed)	N
604	chr6_ssto_hap7	2596480	2596481	rs2524147	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs2524147-G	0.814	8E-65				Affymetrix [10369434] (imputed)	N
604	chr6_ssto_hap7	2597209	2597210	rs2524143	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs2524143-C	0.736	2E-52	(Killer cell immunoglobulin-like receptor 2DS2, KIR2DS2.10428.1.3)	0.43	[0.37-0.49] unit decrease	Affymetrix [10572788] (imputed)	N
604	chr6_ssto_hap7	2597221	2597222	rs2524142	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	6p21.33		rs2524142-C	0.299755	1E-8		0.0256476	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
604	chr6_ssto_hap7	2597221	2597222	rs2524142	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	6p21.33		rs2524142-C	0.299755	8E-10		0.02748	[0.019-0.036] unit decrease	NR [11722792] (imputed)	N
604	chr6_ssto_hap7	2597221	2597222	rs2524142	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs2524142-G	0.734	3E-22	(cAMP-specific 3',5'-cyclic phosphodiesterase 4D, PDE4D.5255.22.3)	0.28	[0.22-0.34] unit increase	Affymetrix [10572788] (imputed)	N
604	chr6_ssto_hap7	2597450	2597451	rs2894207	27436580	Cui Q	2016-07-19	Hum Mol Genet	An extended genome-wide association study identifies novel susceptibility loci for nasopharyngeal carcinoma.	Nasopharyngeal carcinoma	1,583 Southern Chinese ancestry cases, 2,979 Southern Chinese ancestry controls	5,463 Southern Chinese ancestry cases, 5,591 Southern Chinese ancestry controls	6p21.33	NR	rs2894207-?	0.84	2E-19		1.96	[1.69-2.27]	Illumina [463250]	N
604	chr6_ssto_hap7	2597450	2597451	rs2894207	20512145	Bei JX	2010-05-30	Nat Genet	A genome-wide association study of nasopharyngeal carcinoma identifies three new susceptibility loci.	Nasopharyngeal carcinoma	1,583 Chinese ancestry cases, 1,894 Chinese ancestry controls	3,507 Chinese ancestry cases, 3,063 Chinese ancestry controls, 284  Chinese ancestry trios	6p21.33	HLA-C, HLA-B	rs2894207-?	0.82	3E-33		1.64	[1.52-1.75]	Illumina [464328]	N
604	chr6_ssto_hap7	2597500	2597501	rs114583506	33483693	Clements CC	2021-01-22	Mol Psychiatry	Genome-wide association study of patients with a severe major depressive episode treated with electroconvulsive therapy.	Major depressive episode treated with electroconvulsive therapy	2,725 European ancestry cases, 3,290 European ancestry controls	NA	6p21.33	HLA-C	rs114583506-?	NR	4E-8		0.5992	[0.42-0.78]	Illumina [NR] (imputed)	N
604	chr6_ssto_hap7	2597500	2597501	rs114583506	33483693	Clements CC	2021-01-22	Mol Psychiatry	Genome-wide association study of patients with a severe major depressive episode treated with electroconvulsive therapy.	Major depressive disorder and major depressive episode treated with electroconvulsive therapy	1,796 European ancestry cases, 3,290 European ancestry controls	NA	6p21.33	HLA-C	rs114583506-?	NR	1E-7		0.5845	[0.39-0.78]	Illumina [NR] (imputed)	N
604	chr6_ssto_hap7	2597826	2597827	rs2524139	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	XXbac-BPG248L24.13	rs2524139-C	0.734	2E-52	(Killer cell immunoglobulin-like receptor 2DS2, KIR2DS2.10428.1.3)	0.43	[0.37-0.49] unit decrease	Affymetrix [10572788] (imputed)	N
604	chr6_ssto_hap7	2598085	2598086	rs9380237	32558222	Okamura K	2020-06-18	Pigment Cell Melanoma Res	Genome-wide association study identifies CDH13 as a susceptibility gene for rhododendrol-induced leukoderma.	Leukoderma in response to rhododendrol	147 Japanese ancestry cases, 112 Japanese ancestry controls	NA	6p21.33	HLA-B, HLA-C	rs9380237-?	NR	8E-6		3.5714285	[1.96-6.25]	Illumina [1057565]	N
604	chr6_ssto_hap7	2598154	2598155	rs3094682	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	6p21.33	NR	rs3094682-C	0.8056	2E-23		0.0598	[0.048-0.072] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
604	chr6_ssto_hap7	2598816	2598817	rs55745121	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	6p21.33	XXbac-BPG248L24.13	rs55745121-C	0.00771999999999995	2E-12		0.103537746	[0.075-0.132] unit increase	Affymetrix [93095623] (imputed)	N
604	chr6_ssto_hap7	2598828	2598829	rs2524129	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2524129-C	0.298408	4E-18		0.0377033	[0.029-0.046] unit decrease	NR [11722792] (imputed)	N
604	chr6_ssto_hap7	2598828	2598829	rs2524129	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small LDL	115,082 European ancestry individuals	NA	6p21.33		rs2524129-C	0.298408	2E-16		0.0359658	[0.027-0.045] unit decrease	NR [11722792] (imputed)	N
604	chr6_ssto_hap7	2598828	2598829	rs2524129	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2524129-C	0.298408	5E-15		0.0341259	[0.026-0.043] unit decrease	NR [11722792] (imputed)	N
604	chr6_ssto_hap7	2598828	2598829	rs2524129	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium LDL	115,082 European ancestry individuals	NA	6p21.33		rs2524129-C	0.298408	5E-17		0.036788	[0.028-0.045] unit decrease	NR [11722792] (imputed)	N
604	chr6_ssto_hap7	2598828	2598829	rs2524129	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2524129-C	0.298408	3E-14		0.0327886	[0.024-0.041] unit decrease	NR [11722792] (imputed)	N
604	chr6_ssto_hap7	2598828	2598829	rs2524129	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total triglycerides levels	115,082 European ancestry individuals	NA	6p21.33		rs2524129-C	0.298408	3E-15		0.0342705	[0.026-0.043] unit decrease	NR [11722792] (imputed)	N
604	chr6_ssto_hap7	2598828	2598829	rs2524129	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2524129-C	0.298408	2E-11		0.0290519	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
604	chr6_ssto_hap7	2598955	2598956	rs2246954	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.13	rs2246954-A	NR	2E-8		0.0159083	[0.01-0.021] unit decrease	Affymetrix [321114] (imputed)	N
604	chr6_ssto_hap7	2598955	2598956	rs2246954	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.13	rs2246954-A	NR	1E-9		0.0195845	[0.013-0.026] unit increase	Affymetrix [323858] (imputed)	N
604	chr6_ssto_hap7	2599183	2599184	rs2247056	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-3 fatty acid levels	115,006 European ancestry individuals	NA	6p21.33		rs2247056-T	0.296693	2E-16		0.0356403	[0.027-0.044] unit decrease	NR [11722792] (imputed)	N
604	chr6_ssto_hap7	2599183	2599184	rs2247056	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2247056-T	0.296684	6E-12		0.0298649	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
604	chr6_ssto_hap7	2599183	2599184	rs2247056	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.33	NR	rs2247056-T	NR	2E-14		0.034	unit decrease	Affymetrix [at least 7091467] (imputed)	N
604	chr6_ssto_hap7	2599183	2599184	rs2247056	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.33	NR	rs2247056-T	0.249	1E-12	(EA)	0.034	unit decrease	Affymetrix [at least 7091467] (imputed)	N
604	chr6_ssto_hap7	2599183	2599184	rs2247056	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.33	NR	rs2247056-T	NR	2E-18		0.043	unit decrease	Affymetrix [at least 7091467] (imputed)	N
604	chr6_ssto_hap7	2599183	2599184	rs2247056	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.33	NR	rs2247056-T	0.249	2E-17	(EA)	0.045	unit decrease	Affymetrix [at least 7091467] (imputed)	N
604	chr6_ssto_hap7	2599183	2599184	rs2247056	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.33	NR	rs2247056-T	NR	2E-8		0.028	unit decrease	Affymetrix [at least 7091467] (imputed)	N
604	chr6_ssto_hap7	2599183	2599184	rs2247056	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.33	NR	rs2247056-T	0.249	6E-8	(EA)	0.029	unit decrease	Affymetrix [at least 7091467] (imputed)	N
604	chr6_ssto_hap7	2599183	2599184	rs2247056	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	6p21.33	HLA-C, HLA-B	rs2247056-T	0.27	4E-12		1.18	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
604	chr6_ssto_hap7	2599183	2599184	rs2247056	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	Triglycerides	96,598 European ancestry individuals	NA	6p21.33	HLA	rs2247056-T	0.25	2E-15		2.99	[2.17-3.81] mg/dL decrease	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
604	chr6_ssto_hap7	2599430	2599431	rs2853923	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.13	rs2853923-G	NR	4E-8		0.0175506	[0.011-0.024] unit decrease	Affymetrix [323858] (imputed)	N
604	chr6_ssto_hap7	2599734	2599735	rs17192526	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.13	rs17192526-C	NR	1E-9		0.0195758	[0.013-0.026] unit increase	Affymetrix [323858] (imputed)	N
604	chr6_ssto_hap7	2599734	2599735	rs17192526	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.13	rs17192526-C	NR	8E-9		0.0185107	[0.012-0.025] unit increase	Affymetrix [127266] (imputed)	N
604	chr6_ssto_hap7	2599734	2599735	rs17192526	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.13	rs17192526-C	NR	2E-18		0.0275913	[0.021-0.034] unit decrease	Affymetrix [323123] (imputed)	N
604	chr6_ssto_hap7	2599783	2599784	rs4406273	26626624	Stuart PE	2015-11-28	Am J Hum Genet	Genome-wide Association Analysis of Psoriatic Arthritis and Cutaneous Psoriasis Reveals Differences in Their Genetic Architecture.	Psoriasis vulgaris	4,007 European ancestry cases, 4,934 European ancestry controls	up to 9,075 European ancestry cases, up to European ancestry 12,726 controls	6p21.33	HLA-B, HLA-C	rs4406273-A	NR	2E-312		3.38	NR	Illumina [up to 11532644] (imputed)	N
604	chr6_ssto_hap7	2599783	2599784	rs4406273	23143594	Tsoi LC	2012-12-01	Nat Genet	Identification of 15 new psoriasis susceptibility loci highlights the role of innate immunity.	Psoriasis	10,588 European ancestry cases, 22,806 European ancestry controls	NA	6p21.33	HLA-B, HLA-C	rs4406273-A	0.092	5E-723		4.32		Illumina [111236] (imputed)	N
604	chr6_ssto_hap7	2599810	2599811	rs2524095	31879980	German CA	2019-12-26	Genet Epidemiol	Ordered multinomial regression for genetic association analysis of ordinal phenotypes at Biobank scale.	Hypertension	30,822 British ancestry normal blood pressure individuals, 25,242 British ancestry elevated blood pressure individuals, 50,461 British ancestry stage 1 hypertension individuals, 75,286 British ancestry stage 2 hypertension individuals, 3,754 British ancestry hypertension crisis individuals	NA	6p21.33	LINC02571	rs2524095-?	NR	1E-9		0.03838402	NR unit increase	Affymetrix [464137]	N
604	chr6_ssto_hap7	2601629	2601630	rs28367631	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	WASF5P, HLA-C, XXbac-BPG248L24.10, USP8P1, RPL3P2, XXbac-BPG248L24.13	rs28367631-T	0.3457286	1E-15	(EA, MHC class I polypeptide-related sequence A)	0.3635	[0.28-0.45] unit decrease	Affymetrix [509946]	N
604	chr6_ssto_hap7	2601807	2601808	rs2524045	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.13	rs2524045-G	NR	7E-11		0.022607	[0.016-0.029] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_ssto_hap7	2602335	2602336	rs28367657	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.13	rs28367657-A	NR	1E-12		0.0243391	[0.018-0.031] unit decrease	Affymetrix [323123] (imputed)	N
604	chr6_ssto_hap7	2602866	2602867	rs9366778	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR		HLA-C	rs9366778-G	0.626619	3E-11		0.018043	[0.013-0.023] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
604	chr6_ssto_hap7	2603179	2603180	rs2844592	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gastric polyp	6,155 European ancestry cases, 341,871 European ancestry controls, 1,337 East Asian ancestry cases, 158,249 East Asian ancestry controls	NA	6p21.33		rs2844592-G	NR	4E-8		0.0998	[0.064-0.135] unit increase	Affymetrix, Illumina [20456140] (imputed)	N
604	chr6_ssto_hap7	2603386	2603387	rs114985235	26891255	Jung ES	2016-02-18	Inflamm Bowel Dis	HLA-C*01 is a Risk Factor for Crohn's Disease.	Crohn's disease	275 Korean ancestry cases, 2,369 Korean ancestry controls	242 Korean ancestry cases, 1,066 Korean ancestry controls	6p21.33	HLA-B, HLA-C	rs114985235-C	0.12	9E-23		2.25	[1.91-2.66]	Affymetrix [3387207] (imputed)	N
604	chr6_ssto_hap7	2603639	2603640	rs12211087	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Depression	at least 5,919 European ancestry cases, at least 130,691 European ancestry controls	634,037 European ancestry cases, 1,308,690 European ancestry controls	6p21.33	XXbac, BPG248L24.13	rs12211087-T	0.09841	2E-6		0.018283794	[0.0097-0.0269] unit decrease	NR [9417325] (imputed)	N
604	chr6_ssto_hap7	2604554	2604555	rs142628781	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.33		rs142628781-T	0.070905	3E-14		1.080437	[1.06-1.1]	Affymetrix, Illumina [9851866] (imputed)	N
604	chr6_ssto_hap7	2604831	2604832	rs9264845	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs9264845-C	0.258	3E-16	(MHC class I polypeptide-related sequence B, MICB.5102.55.3)	0.26	[0.2-0.32] unit decrease	Affymetrix [10572788] (imputed)	N
604	chr6_ssto_hap7	2605322	2605323	rs7750963	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large VLDL	115,082 European ancestry individuals	NA	6p21.33		rs7750963-A	0.298149	7E-13		0.0308157	[0.022-0.039] unit decrease	NR [11722792] (imputed)	N
604	chr6_ssto_hap7	2605322	2605323	rs7750963	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large VLDL	115,082 European ancestry individuals	NA	6p21.33		rs7750963-A	0.298149	3E-12		0.0302555	[0.022-0.039] unit decrease	NR [11722792] (imputed)	N
604	chr6_ssto_hap7	2605322	2605323	rs7750963	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6p21.33		rs7750963-A	0.298149	7E-9		0.0250346	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
604	chr6_ssto_hap7	2605322	2605323	rs7750963	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs7750963-G	0.882	8E-43	(Killer cell immunoglobulin-like receptor 2DS2, KIR2DS2.10428.1.3)	0.59	[0.51-0.67] unit decrease	Affymetrix [10572788] (imputed)	N
604	chr6_ssto_hap7	2605472	2605473	rs9461688	18464913	Melzer D	2008-05-09	PLoS Genet	A genome-wide association study identifies protein quantitative trait loci (pQTLs).	Protein quantitative trait loci	1,200 European ancestry individuals	up to 4,590 European ancestry individuals	6p21.33	HLA-C	rs9461688-?	0.31	4E-6	(IL18)			Illumina [496032]	N
604	chr6_ssto_hap7	2605491	2605492	rs9264875	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Lectin-like oxidized LDL receptor 1 levels	21,758 European ancestry individuals	9,173 individuals	6p21.33		rs9264875-C	0.12	2E-9		0.092	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
604	chr6_ssto_hap7	2605956	2605957	rs556990455	32534018	Liu X	2020-06-10	Brain Behav Immun	Genetic factors underlying the bidirectional relationship between autoimmune and mental disorders - findings from a Danish population-based study.	Autoimmune traits	1,383 Danish ancestry cases, 62,656 Danish ancestry controls	NA	6p21.33	NR	rs556990455-T	0.016	7E-11		2.23	[1.79-2.77]	NR [7721839] (imputed)	N
604	chr6_ssto_hap7	2606019	2606020	rs6457374	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs6457374-T	0.753	2E-34	(MHC class I polypeptide-related sequence B, MICB.5102.55.3)	0.39	[0.33-0.45] unit increase	Affymetrix [10572788] (imputed)	N
604	chr6_ssto_hap7	2606019	2606020	rs6457374	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	6p21.33	HLA-C	rs6457374-T	0.73	8E-35		0.041	[0.035-0.047] unit decrease	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
604	chr6_ssto_hap7	2606079	2606080	rs9368677	23042114	Hirota T	2012-10-07	Nat Genet	Genome-wide association study identifies eight new susceptibility loci for atopic dermatitis in the Japanese population.	Atopic dermatitis	1,472 Japanese ancestry cases, 7,971 Japanese ancestry controls	1,856 Japanese ancestry cases, 7,021 Japanese ancestry controls	6p21.33	HLA-C	rs9368677-G	0.798	1E-17		1.36	[1.27-1.46]	Illumina [606164]	N
604	chr6_ssto_hap7	2606311	2606312	rs9264904	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.33		rs9264904-G	0.739	4E-158				Affymetrix [10369434] (imputed)	N
604	chr6_ssto_hap7	2606311	2606312	rs9264904	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.10	rs9264904-A	NR	3E-11		0.0214122	[0.015-0.028] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_ssto_hap7	2606311	2606312	rs9264904	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.10	rs9264904-A	NR	8E-11		0.0209999	[0.015-0.027] unit increase	Affymetrix [319769] (imputed)	N
604	chr6_ssto_hap7	2606311	2606312	rs9264904	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.10	rs9264904-A	NR	8E-9		0.0188102	[0.012-0.025] unit increase	Affymetrix [321169] (imputed)	N
604	chr6_ssto_hap7	2606311	2606312	rs9264904	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	6p21.33	XXbac-BPG248L24.13	rs9264904-A	0.260825	6E-13		0.019344117	[0.014-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
604	chr6_ssto_hap7	2606311	2606312	rs9264904	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	6p21.33	NR	rs9264904-A	0.262119	3E-387		0.091059	[0.087-0.095] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
604	chr6_ssto_hap7	2607251	2607252	rs2508008	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p21.33	NR	rs2508008-G	0.119	3E-6	(IFNAR2_of_CD8p_T)			Illumina [5084123] (imputed)	N
604	chr6_ssto_hap7	2607496	2607497	rs3873386	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.10	rs3873386-C	NR	9E-11		0.0189406	[0.013-0.025] unit decrease	Affymetrix [321016] (imputed)	N
604	chr6_ssto_hap7	2607778	2607779	rs1634761	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.10	rs1634761-T	NR	6E-12		0.0193034	[0.014-0.025] unit decrease	Affymetrix [321016] (imputed)	N
604	chr6_ssto_hap7	2607778	2607779	rs1634761	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.10	rs1634761-T	NR	1E-13		0.0211552	[0.016-0.027] unit increase	Affymetrix [321169] (imputed)	N
604	chr6_ssto_hap7	2608131	2608132	rs9264942	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	6p21.33	NR	rs9264942-?	NR	5E-25	(EA)			Affymetrix, Illumina [~ 9000000] (imputed)	N
604	chr6_ssto_hap7	2608131	2608132	rs9264942	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Crohn's disease	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls	6p21.33	PSORS1C1, NFKBIL1, HLA-C, MICB	rs9264942-C	0.378	5E-28		1.145	[1.107-1.184]	Affymetrix, Illumina [1230000] (imputed)	N
604	chr6_ssto_hap7	2608131	2608132	rs9264942	21051598	Pereyra F	2010-11-04	Science	The major genetic determinants of HIV-1 control affect HLA class I peptide presentation.	HIV-1 control	516 European cases, 1,196 European controls, 341 African American cases, 892 African American controls, 117 Hispanic cases, 560 Hispanic controls	NA	6p21.33	HLA-C	rs9264942-C	0.34	3E-35	(EA)	2.9	[NR]	Illumina [1384048] (imputed)	N
604	chr6_ssto_hap7	2608131	2608132	rs9264942	20041166	Fellay J	2009-12-24	PLoS Genet	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	6p21.33	HLA-C	rs9264942-C	0.412	6E-32	(setpoint)	5.3	[NR] % increase	Illumina [NR]	N
604	chr6_ssto_hap7	2608131	2608132	rs9264942	20041166	Fellay J	2009-12-24	PLoS Genet	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	6p21.33	HLA-C	rs9264942-?	NR	6E-12	(progression)			Illumina [NR]	N
604	chr6_ssto_hap7	2608306	2608307	rs10484554	33385400	Patrick MT	2020-12-29	J Invest Dermatol	Causal relationship and shared genetic loci between psoriasis and type 2 diabetes through trans-disease meta-analysis.	Psoriasis or type 2 diabetes (trans-disease meta-analysis)(opposite effect)	11,024 European ancestry psoriasis cases, 74,124 European ancestry diabetes cases, 840,342 European ancestry controls	NA	6p21.33	NR	rs10484554-T		2E-302		1.67		NR [8016731] (imputed)	N
604	chr6_ssto_hap7	2608306	2608307	rs10484554	26626624	Stuart PE	2015-11-28	Am J Hum Genet	Genome-wide Association Analysis of Psoriatic Arthritis and Cutaneous Psoriasis Reveals Differences in Their Genetic Architecture.	Cutaneous psoriasis	1,363 European ancestry cases, 4,934 European ancestry controls	up to 2,969 European ancestry cases, up to European ancestry 14,384 controls	6p21.33	HLA, HLA-C	rs10484554-T	NR	4E-207		3.304	NR	Illumina [11532644] (imputed)	N
604	chr6_ssto_hap7	2608306	2608307	rs10484554	20953190	Strange A	2010-10-17	Nat Genet	A genome-wide association study identifies new psoriasis susceptibility loci and an interaction between HLA-C and ERAP1.	Psoriasis	2,178 European ancestry cases, 5,175 European ancestry controls	3,174 European ancestry cases, 5,464 European ancestry controls	6p21.33	HLA-C	rs10484554-?	NR	4E-214		4.66	[4.23-5.13]	Illumina [535475]	N
604	chr6_ssto_hap7	2608306	2608307	rs10484554	19115949	Limou S	2009-01-01	J Infect Dis	Genomewide association study of an AIDS-nonprogression cohort emphasizes the role played by HLA genes (ANRS Genomewide Association Study 02).	AIDS progression	275 European ancestry seropositive non-progressors, 86 European ancestry seropositive rapid progressors, 1,352 European ancestry seronegative controls	(see Fellay 2007)	6p21.33	HLA-C	rs10484554-T	0.13	6E-8				Illumina [291119]	N
604	chr6_ssto_hap7	2608306	2608307	rs10484554	18369459	Liu Y	2008-04-04	PLoS Genet	A genome-wide association study of psoriasis and psoriatic arthritis identifies new disease loci.	Psoriasis	218 European ancestry cases, 519 European ancestry controls	1,153 European ancestry cases, 1,217 European ancestry controls	6p21.33	HLA-C	rs10484554-T	0.15	2E-39		2.8	[2.40-3.30]	Illumina [305983]	N
604	chr6_ssto_hap7	2608337	2608338	rs9348865	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.10	rs9348865-G	NR	4E-10		0.0204625	[0.014-0.027] unit increase	Affymetrix [323858] (imputed)	N
604	chr6_ssto_hap7	2608337	2608338	rs9348865	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.10	rs9348865-G	NR	3E-9		0.0194694	[0.013-0.026] unit increase	Affymetrix [127266] (imputed)	N
604	chr6_ssto_hap7	2608337	2608338	rs9348865	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6p21.33	XXbac-BPG248L24.10	rs9348865-G	0.351828	2E-14		0.024740536	[0.018-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
604	chr6_ssto_hap7	2608378	2608379	rs9264945	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	6p21.33	XXbac-BPG248L24.10	rs9264945-A	0.133478	2E-29		0.0345332	[0.028-0.041] unit increase	Affymetrix [93095623] (imputed)	N
604	chr6_ssto_hap7	2608444	2608445	rs3094691	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.10	rs3094691-A	NR	1E-9		0.0192715	[0.013-0.025] unit increase	Affymetrix [323858] (imputed)	N
604	chr6_ssto_hap7	2608444	2608445	rs3094691	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.10	rs3094691-A	NR	2E-8		0.0178577	[0.012-0.024] unit increase	Affymetrix [127266] (imputed)	N
604	chr6_ssto_hap7	2608444	2608445	rs3094691	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.10	rs3094691-A	NR	4E-15		0.0225202	[0.017-0.028] unit increase	Affymetrix [321169] (imputed)	N
604	chr6_ssto_hap7	2608503	2608504	rs3132479	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.10	rs3132479-G	NR	2E-12		0.019918	[0.014-0.025] unit decrease	Affymetrix [321016] (imputed)	N
604	chr6_ssto_hap7	2608503	2608504	rs3132479	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.10	rs3132479-G	NR	3E-14		0.0234978	[0.017-0.03] unit decrease	Affymetrix [323123] (imputed)	N
604	chr6_ssto_hap7	2608503	2608504	rs3132479	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	6p21.33	XXbac-BPG248L24.10	rs3132479-A	0.5388	2E-7		0.0369	[0.023-0.051] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
604	chr6_ssto_hap7	2608503	2608504	rs3132479	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Perceived unattractiveness to mosquitoes	16,576 European ancestry individuals	NA	6p21.33	HLA-C, MICA	rs3132479-G	0.466	6E-7		0.11555	[0.07-0.161] unit decrease	Illumina [7433384] (imputed)	N
604	chr6_ssto_hap7	2608545	2608545	rs540653847	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6p21.33	XXbac-BPG248L24.10	rs540653847-GC	0.00672899999999999	3E-18		0.12216329	[0.095-0.15] unit increase	Affymetrix [93095623] (imputed)	N
604	chr6_ssto_hap7	2608545	2608545	rs540653847	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	6p21.33	XXbac-BPG248L24.10	rs540653847-GC	0.0064	8E-9		0.1328338	[0.088-0.178] unit increase	Affymetrix [~ 2500000] (imputed)	N
604	chr6_ssto_hap7	2608545	2608545	rs540653847	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	6p21.33	XXbac-BPG248L24.10	rs540653847-GC	0.0064	6E-10		0.1418412	[0.097-0.187] unit increase	Affymetrix [~ 2500000] (imputed)	N
604	chr6_ssto_hap7	2608570	2608570	rs5875308	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.33	XXbac-BPG248L24.10	rs5875308-CA	0.2653	7E-6		0.0365	[0.021-0.052] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
604	chr6_ssto_hap7	2609407	2609408	rs3873387	29532581	Hallfors J	2018-03-13	Addict Biol	Genome-wide association study in Finnish twins highlights the connection between nicotine addiction and neurotrophin signaling pathway.	Smoking behaviour (maximum cigarettes in a 24 hour period)	1,711 Finnish ancestry ever smoker individuals from up to 739 families	NA	6p21.33	NR	rs3873387-A	0.24743	1E-6		2.706126	[1.61-3.80] unit decrease	Illumina [9469131] (imputed)	N
604	chr6_ssto_hap7	2609571	2609572	rs3873388	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.10	rs3873388-G	NR	8E-10		0.0213529	[0.015-0.028] unit decrease	Affymetrix [323123] (imputed)	N
604	chr6_ssto_hap7	2610058	2610059	rs1634794	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.33	Intergenic	rs1634794-T	NR	7E-10	(women)	0.0287016	[0.02-0.038] unit decrease	Illumina [13520550] (imputed)	N
604	chr6_ssto_hap7	2610179	2610180	rs9264962	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.33	Intergenic	rs9264962-G	NR	8E-13		0.0264842	[0.019-0.034] unit increase	Illumina [13520550] (imputed)	N
604	chr6_ssto_hap7	2610191	2610192	rs1005599	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small HDL	115,082 European ancestry individuals	NA	6p21.33		rs1005599-G	0.289198	3E-16		0.0361878	[0.028-0.045] unit decrease	NR [11722792] (imputed)	N
604	chr6_ssto_hap7	2610191	2610192	rs1005599	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium HDL	115,082 European ancestry individuals	NA	6p21.33		rs1005599-G	0.289198	5E-16		0.0364668	[0.028-0.045] unit decrease	NR [11722792] (imputed)	N
604	chr6_ssto_hap7	2610191	2610192	rs1005599	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in HDL	115,082 European ancestry individuals	NA	6p21.33		rs1005599-G	0.289198	2E-15		0.0354759	[0.027-0.044] unit decrease	NR [11722792] (imputed)	N
604	chr6_ssto_hap7	2610191	2610192	rs1005599	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small HDL	115,082 European ancestry individuals	NA	6p21.33		rs1005599-G	0.289198	1E-19		0.0413294	[0.032-0.05] unit decrease	NR [11722792] (imputed)	N
604	chr6_ssto_hap7	2610191	2610192	rs1005599	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total fatty acid levels	115,006 European ancestry individuals	NA	6p21.33		rs1005599-G	0.289208	7E-21		0.0423272	[0.033-0.051] unit decrease	NR [11722792] (imputed)	N
604	chr6_ssto_hap7	2610191	2610192	rs1005599	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Saturated fatty acid levels	115,006 European ancestry individuals	NA	6p21.33		rs1005599-G	0.289208	7E-16		0.0364401	[0.028-0.045] unit decrease	NR [11722792] (imputed)	N
604	chr6_ssto_hap7	2610191	2610192	rs1005599	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small HDL	115,082 European ancestry individuals	NA	6p21.33		rs1005599-G	0.289198	8E-20		0.0413457	[0.032-0.05] unit decrease	NR [11722792] (imputed)	N
604	chr6_ssto_hap7	2610191	2610192	rs1005599	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Monounsaturated fatty acid levels	115,006 European ancestry individuals	NA	6p21.33		rs1005599-G	0.289208	4E-19		0.040361	[0.032-0.049] unit decrease	NR [11722792] (imputed)	N
604	chr6_ssto_hap7	2610191	2610192	rs1005599	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycoprotein acetyls levels	115,082 European ancestry individuals	NA	6p21.33		rs1005599-G	0.289198	4E-32		0.0533982	[0.045-0.062] unit decrease	NR [11722792] (imputed)	N
604	chr6_ssto_hap7	2610521	2610522	rs1634791	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total free cholesterol levels	115,082 European ancestry individuals	NA	6p21.33		rs1634791-A	0.450407	2E-10		0.0263105	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
604	chr6_ssto_hap7	2610521	2610522	rs1634791	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total esterified cholesterol levels	115,082 European ancestry individuals	NA	6p21.33		rs1634791-A	0.450407	6E-11		0.0267294	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
604	chr6_ssto_hap7	2610521	2610522	rs1634791	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol levels	115,082 European ancestry individuals	NA	6p21.33		rs1634791-A	0.450407	7E-11		0.0267605	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
604	chr6_ssto_hap7	2610521	2610522	rs1634791	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Sphingomyelin levels	115,006 European ancestry individuals	NA	6p21.33		rs1634791-A	0.450416	2E-11		0.0265776	[0.019-0.034] unit decrease	NR [11722792] (imputed)	N
604	chr6_ssto_hap7	2610521	2610522	rs1634791	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in LDL	115,082 European ancestry individuals	NA	6p21.33		rs1634791-A	0.450407	7E-10		0.0260256	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
604	chr6_ssto_hap7	2610521	2610522	rs1634791	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	6p21.33	NR	rs1634791-A	0.455909	8E-23		0.011832	[0.0093-0.0143] unit increase	Affymetrix [16585854] (imputed)	N
604	chr6_ssto_hap7	2610521	2610522	rs1634791	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	6p21.33	NR	rs1634791-A	0.455909	1E-12		0.0102161	[0.0074-0.0131] unit increase	Affymetrix [16585866] (imputed)	N
604	chr6_ssto_hap7	2613927	2613928	rs117298325	30498034	Terao C	2018-11-29	Proc Natl Acad Sci U S A	Genetic determinants and an epistasis of LILRA3 and HLA-B*52 in Takayasu arteritis.	Takayasu arteritis	411 Japanese ancestry cases, 2,158 Japanese ancestry controls	219 Japanese ancestry cases, 3,770 Japanese ancestry controls	6p21.33	HLA-B	rs117298325-C	NR	4E-34				Illumina [5878075] (imputed)	N
604	chr6_ssto_hap7	2617313	2617314	rs1634783	31738830	McGraw KL	2019-11-01	Blood Adv	Non-del(5q) myelodysplastic syndromes-associated loci detected by SNP-array genome-wide association meta-analysis.	Non-del(5q) myelodysplastic syndromes	907 European ancestry cases, 5,605 European ancestry controls	NA	6p21.33	intergenic	rs1634783-G	0.5	8E-7		1.3157895	[1.19-1.49]	Affymetrix [7515136] (imputed)	N
604	chr6_ssto_hap7	2617776	2617777	rs1634738	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs1634738-A	0.276	1E-14	(alpha-2-macroglobulin receptor-associated protein, LRPAP1.8829.4.3)	0.22	[0.16-0.28] unit increase	Affymetrix [10572788] (imputed)	N
604	chr6_ssto_hap7	2619769	2619770	rs28367727	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	6p21.33	NR	rs28367727-G	0.229348	1E-9		0.0520093	[0.035-0.069] unit decrease	Affymetrix [17914406] (imputed)	N
604	chr6_ssto_hap7	2621165	2621166	rs9265113	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	6p21.33		rs9265113-C	0.592366	4E-13		0.0285779	[0.021-0.036] unit increase	NR [11722792] (imputed)	N
604	chr6_ssto_hap7	2621165	2621166	rs9265113	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large HDL	115,082 European ancestry individuals	NA	6p21.33		rs9265113-C	0.592366	3E-13		0.0287846	[0.021-0.037] unit increase	NR [11722792] (imputed)	N
604	chr6_ssto_hap7	2621165	2621166	rs9265113	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	6p21.33		rs9265113-C	0.592366	2E-12		0.0277589	[0.02-0.035] unit increase	NR [11722792] (imputed)	N
604	chr6_ssto_hap7	2621165	2621166	rs9265113	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	6p21.33		rs9265113-C	0.592366	8E-13		0.0281895	[0.02-0.036] unit increase	NR [11722792] (imputed)	N
604	chr6_ssto_hap7	2621165	2621166	rs9265113	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	6p21.33		rs9265113-C	0.592366	2E-12		0.0281201	[0.02-0.036] unit increase	NR [11722792] (imputed)	N
604	chr6_ssto_hap7	2621165	2621166	rs9265113	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	6p21.33		rs9265113-C	0.592366	3E-13		0.0295629	[0.022-0.037] unit increase	NR [11722792] (imputed)	N
604	chr6_ssto_hap7	2621165	2621166	rs9265113	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	6p21.33		rs9265113-C	0.592366	1E-12		0.0281506	[0.02-0.036] unit increase	NR [11722792] (imputed)	N
604	chr6_ssto_hap7	2621165	2621166	rs9265113	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	6p21.33		rs9265113-C	0.592366	1E-11		0.0270795	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
605	chr6_ssto_hap7	2621695	2621696	rs9265143	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p21.33	NR	rs9265143-A	0.408	6E-6	(IFNalpha_STAT1_of_CD4p_T)			Illumina [5084123] (imputed)	N
605	chr6_ssto_hap7	2621906	2621907	rs4445093	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (vasodilators used in cardiac diseases)	5,546 European ancestry cases, 237,113 European ancestry controls, 17,050 East Asian ancestry cases, 161,676 East Asian ancestry controls	NA	6p21.33		rs4445093-T	NR	3E-8		0.0768	[0.05-0.104] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
605	chr6_ssto_hap7	2622527	2622528	rs9265153	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Angiopoietin-1 receptor levels	21,758 European ancestry individuals	9,173 individuals	6p21.33		rs9265153-C	0.37	1E-10		0.0638	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
605	chr6_ssto_hap7	2622590	2622591	rs7748141	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PDIA5	5,366 Icelandic ancestry individuals	NA	6p21.33		rs7748141-C	0.07983	2E-47		0.504487	[0.44-0.57] unit increase	Illumina [7506463] (imputed)	N
605	chr6_ssto_hap7	2628006	2628007	rs142174523	31594949	Nievergelt CM	2019-10-08	Nat Commun	International meta-analysis of PTSD genome-wide association studies identifies sex- and ancestry-specific genetic risk loci.	Post-traumatic stress disorder	23,212 European ancestry cases, 4,363 African ancestry cases, 1,981 Latino and Native American ancestry cases, 151,447 European ancestry controls, 10,976 African ancestry controls, 3,722 Latino and Native American ancestry controls	NA	6p21.33	NR	rs142174523-G	NR	4E-8	(African, male)	1.3157895	[1.19-1.45]	Affymetrix, Illumina [~ 1175791] (imputed)	N
605	chr6_ssto_hap7	2628628	2628629	rs117309887	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PCSK7	5,355 Icelandic ancestry individuals	NA	6p21.33		rs117309887-T	0.09768	2E-14		0.238034	[0.18-0.3] unit increase	Illumina [7506463] (imputed)	N
605	chr6_ssto_hap7	2630085	2630086	rs116576188	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs116576188-C	0.116	2E-22	(Ubiquitin carboxyl-terminal hydrolase 25, USP25.9215.117.3)	0.38	[0.3-0.46] unit increase	Affymetrix [10572788] (imputed)	N
605	chr6_ssto_hap7	2630104	2630105	rs114046333	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p21.33	NR	rs114046333-?	NR	1E-14		0.2802	[0.21-0.35] unit decrease	Illumina [at least 560000] (imputed)	N
605	chr6_ssto_hap7	2630125	2630126	rs3094685	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DNAJC10	5,351 Icelandic ancestry individuals	NA	6p21.33		rs3094685-T	0.2128	3E-35		0.266011	[0.22-0.31] unit increase	Illumina [7506463] (imputed)	N
605	chr6_ssto_hap7	2630250	2630251	rs3130703	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 23)	2,187 European ancestry individuals	NA	6p21.33	NR	rs3130703-C	0.2795	4E-7		0.1707	[0.1-0.24] unit increase	Illumina [10677593] (imputed)	N
605	chr6_ssto_hap7	2631295	2631296	rs9265503	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs9265503-T	0.342	4E-28	(MHC class I polypeptide-related sequence B, MICB.5102.55.3)	0.31	[0.25-0.37] unit decrease	Affymetrix [10572788] (imputed)	N
605	chr6_ssto_hap7	2631334	2631335	rs9405068	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atopic dermatitis	6,224 European ancestry cases, 475,075 European ancestry controls, 4,296 East Asian ancestry cases, 163,807 East Asian ancestry controls	NA	6p21.33		rs9405068-T	NR	1E-13		0.2372	[0.17-0.3] unit decrease	Affymetrix, Illumina [25843389] (imputed)	N
605	chr6_ssto_hap7	2631487	2631488	rs9265517	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.10	rs9265517-C	NR	8E-10		0.0206019	[0.014-0.027] unit decrease	Affymetrix [319769] (imputed)	N
605	chr6_ssto_hap7	2631487	2631488	rs9265517	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.10	rs9265517-C	NR	2E-9		0.0202233	[0.014-0.027] unit decrease	Affymetrix [319769] (imputed)	N
605	chr6_ssto_hap7	2631857	2631858	rs111797167	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on unswitched memory B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs111797167-G	0.07168	7E-9		0.4094	[0.27-0.55] unit increase	Illumina [18238311] (imputed)	N
605	chr6_ssto_hap7	2631857	2631858	rs111797167	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on IgD+ CD24+ B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs111797167-G	0.07168	1E-8		0.4014	[0.26-0.54] unit increase	Illumina [18238311] (imputed)	N
605	chr6_ssto_hap7	2632084	2632085	rs9265559	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	HDL cholesterol levels	115,082 European ancestry individuals	NA	6p21.33		rs9265559-C	0.649153	2E-13		0.0287989	[0.021-0.036] unit increase	NR [11722792] (imputed)	N
605	chr6_ssto_hap7	2632084	2632085	rs9265559	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in HDL	115,082 European ancestry individuals	NA	6p21.33		rs9265559-C	0.649153	2E-13		0.0284805	[0.021-0.036] unit increase	NR [11722792] (imputed)	N
605	chr6_ssto_hap7	2632139	2632140	rs28752857	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs28752857-?		5E-8		1.06	[1.04-1.08]	Illumina [7645193] (imputed)	N
605	chr6_ssto_hap7	2632256	2632256	rs530257728	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	6p21.33	intergenic	rs530257728-GAAATAAAGCAGATTT	0.0801	5E-21		0.06499605	[0.051-0.079] unit increase	Affymetrix [~ 2500000] (imputed)	N
605	chr6_ssto_hap7	2632265	2632266	rs28895001	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.33		rs28895001-T	0.163489	8E-27		0.045384236	[0.037-0.054] unit decrease	Affymetrix [93095623] (imputed)	N
605	chr6_ssto_hap7	2632822	2632823	rs7772894	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on memory B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs7772894-T	0.10721	3E-9		0.2956	[0.2-0.39] unit increase	Illumina [18238311] (imputed)	N
605	chr6_ssto_hap7	2632822	2632823	rs7772894	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on CD24+ CD27+ B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs7772894-T	0.10721	3E-9		0.2945	[0.2-0.39] unit increase	Illumina [18238311] (imputed)	N
605	chr6_ssto_hap7	2633184	2633185	rs17192757	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling miserable	376,097 European ancestry individuals	NA	6p21.33	PSORS1C1	rs17192757-A	0.132647	5E-8		5.46	z score increase	NR [10847151] (imputed)	N
605	chr6_ssto_hap7	2633216	2633216	rs111743557	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-B	rs111743557-TTG	NR	5E-9		0.0221507	[0.015-0.03] unit decrease	Affymetrix [323858] (imputed)	N
605	chr6_ssto_hap7	2633216	2633216	rs111743557	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HLA-B	rs111743557-TTG	NR	2E-8		0.0212612	[0.014-0.029] unit decrease	Affymetrix [127266] (imputed)	N
605	chr6_ssto_hap7	2633216	2633216	rs111743557	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.33	NR	rs111743557-T	0.888	2E-18	(conditional)	0.729	[0.66-0.8]	Illumina [11270530] (imputed)	N
605	chr6_ssto_hap7	2633403	2633404	rs9265620	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	6p21.33		rs9265620-T	0.629786	1E-11		0.0263927	[0.019-0.034] unit decrease	NR [11722792] (imputed)	N
605	chr6_ssto_hap7	2633403	2633404	rs9265620	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	6p21.33		rs9265620-T	0.629787	7E-13		0.0279211	[0.02-0.036] unit increase	NR [11722792] (imputed)	N
605	chr6_ssto_hap7	2634004	2634005	rs6902116	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	6p21.33	HLA-B	rs6902116-A	0.677972	2E-40		0.0274179	[0.023-0.031] unit increase	Affymetrix [NR] (imputed)	N
605	chr6_ssto_hap7	2634537	2634538	rs12212594	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Psoriasis vulgaris	5,072 European ancestry cases, 478,102 European ancestry controls, 206 East Asian ancestry cases, 172,289 East Asian ancestry controls	NA	6p21.33		rs12212594-C	NR	5E-209		1.4454	[1.35-1.54] unit increase	Affymetrix, Illumina [25844455] (imputed)	N
605	chr6_ssto_hap7	2635054	2635055	rs6908001	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	6p21.33		rs6908001-C	NR	4E-36		0.0278	[0.023-0.032] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
605	chr6_ssto_hap7	2635354	2635355	rs28752871	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	76 Han Chinese ancestry cases, 889 Han Chinese ancestry controls	NA	6p21.33	HLA-B	rs28752871-?	NR	5E-8	(conditional on rs12110437 and rs1264697)			Illumina [3403929] (imputed)	N
605	chr6_ssto_hap7	2636242	2636243	rs9265742	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CPXM1	5,363 Icelandic ancestry individuals	NA	6p21.33		rs9265742-A	0.2045	4E-12		0.162501	[0.12-0.21] unit decrease	Illumina [7506463] (imputed)	N
605	chr6_ssto_hap7	2636359	2636360	rs11968046	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	6p21.33		rs11968046-C	0.772833	5E-11		0.0309702	[0.022-0.04] unit decrease	NR [11722792] (imputed)	N
605	chr6_ssto_hap7	2636359	2636360	rs11968046	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	6p21.33		rs11968046-C	0.772833	2E-10		0.0301683	[0.021-0.04] unit decrease	NR [11722792] (imputed)	N
605	chr6_ssto_hap7	2636359	2636360	rs11968046	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	6p21.33		rs11968046-C	0.772833	2E-10		0.030047	[0.021-0.039] unit decrease	NR [11722792] (imputed)	N
605	chr6_ssto_hap7	2636359	2636360	rs11968046	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Triglyceride levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	6p21.33	HLA-C, HLA-B	rs11968046-?		2E-11		0.0605	[0.043-0.078] unit decrease	Illumina [31500000] (imputed)	N
605	chr6_ssto_hap7	2636435	2636436	rs9265745	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.33		rs9265745-A	0.591	7E-36				Affymetrix [10369434] (imputed)	N
605	chr6_ssto_hap7	2636992	2636993	rs1634774	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.33		rs1634774-A	0.68	1E-34				Affymetrix [10369434] (imputed)	N
605	chr6_ssto_hap7	2636996	2636997	rs28752890	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs28752890-A	NR	2E-12		0.0210684	[0.015-0.027] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_ssto_hap7	2636996	2636997	rs28752890	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs28752890-A	NR	1E-11		0.0202141	[0.014-0.026] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_ssto_hap7	2636996	2636997	rs28752890	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs28752890-A	NR	4E-11		0.0198841	[0.014-0.026] unit increase	Affymetrix [321169] (imputed)	N
605	chr6_ssto_hap7	2637041	2637042	rs114444221	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	6p21.33	HLA-B	rs114444221-?	NR	9E-18		1.133	[1.1-1.16]	Affymetrix [9000000] (imputed)	N
605	chr6_ssto_hap7	2637041	2637042	rs114444221	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	6p21.33	HLA-B	rs114444221-A	NR	9E-16		1.134	[1.1-1.17]	Affymetrix [9000000] (imputed)	N
605	chr6_ssto_hap7	2637596	2637597	rs28752923	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6p21.33		rs28752923-?	NR	4E-10		0.9344	[0.91-0.96]	NR [685523]	N
605	chr6_ssto_hap7	2637639	2637640	rs28752924	34454985	Sliz E	2021-08-26	J Allergy Clin Immunol	Uniting biobank resources reveals novel genetic pathways modulating susceptibility for atopic dermatitis.	Atopic dermatitis	22,474 European ancestry cases, 774,187 European ancestry controls	NA	6p21.33	NR	rs28752924-t	0.6336	5E-11		1.1	[1.07-1.14]	Affymetrix, Illumina [16201029] (imputed)	N
605	chr6_ssto_hap7	2638008	2638009	rs28752936	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs28752936-A	NR	5E-11		0.0187215	[0.013-0.024] unit increase	Affymetrix [321169] (imputed)	N
605	chr6_ssto_hap7	2638112	2638113	rs1634769	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p21.33	NR	rs1634769-A	0.649245	2E-13		0.026251458	[0.019-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
605	chr6_ssto_hap7	2638205	2638206	rs380852	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6p21.33	NR	rs380852-T	0.05472	7E-15		1.107	[1.08-1.135]	Affymetrix [15688218] (imputed)	N
605	chr6_ssto_hap7	2638350	2638351	rs28752949	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs28752949-A	NR	3E-9		0.0170482	[0.011-0.023] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_ssto_hap7	2639359	2639360	rs1631951	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p21.33	NR	rs1631951-T	0.18	4E-12		1.15	[1.11-1.2]	Affymetrix [9886854] (imputed)	N
605	chr6_ssto_hap7	2639359	2639360	rs1631951	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p21.33	NR	rs1631951-T	0.18	6E-17			[NR]	Affymetrix [9886854] (imputed)	N
605	chr6_ssto_hap7	2639359	2639360	rs1631951	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p21.33	NR	rs1631951-T	0.18	2E-15		1.13	[1.1-1.16]	Affymetrix [9886854] (imputed)	N
605	chr6_ssto_hap7	2639359	2639360	rs1631951	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p21.33	NR	rs1631951-T	0.18	3E-16			[NR]	Affymetrix [9886854] (imputed)	N
605	chr6_ssto_hap7	2639359	2639360	rs1631951	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in non-current smokers	16,488 European ancestry cases, 169,688 European ancestry controls	NA	6p21.33	NR	rs1631951-T	0.18	2E-15		1.13	[1.1-1.16]	Affymetrix [9886854] (imputed)	N
605	chr6_ssto_hap7	2639359	2639360	rs1631951	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in never smokers	8,631 European ancestry cases, 120,544 European ancestry controls	NA	6p21.33	NR	rs1631951-T	0.18	3E-12		1.15	[1.11-1.2]	Affymetrix [9886854] (imputed)	N
605	chr6_ssto_hap7	2639359	2639360	rs1631951	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in ever smokers	12,446 European ancestry cases, 59,145 European ancestry controls	NA	6p21.33	NR	rs1631951-T	0.18	4E-7		1.1	[1.06-1.14]	Affymetrix [9886854] (imputed)	N
605	chr6_ssto_hap7	2639449	2639450	rs28367832	32004448	Savage SA	2020-01-30	Am J Hum Genet	Genome-wide Association Study Identifies HLA-DPB1 as a Significant Risk Factor for Severe Aplastic Anemia.	Severe aplastic anemia	359 European ancestry cases, 1,396 European ancestry controls	175 European ancestry cases, 1,059 European ancestry controls	6p21.33	HLA-B	rs28367832-?	NR	7E-9		1.49	[1.22-1.78]	Illumina [688067]	N
605	chr6_ssto_hap7	2640138	2640139	rs1625792	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Help-seeking from a GP	113,262 British ancestry cases, 219,360 British ancestry controls	NA	6p21.33	NR	rs1625792-G	0.853	5E-8		1.0405828	[1.03-1.05]	NR [5276842] (imputed)	N
605	chr6_ssto_hap7	2640138	2640139	rs1625792	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p21.33	NR	rs1625792-?	NR	1E-7		5.298	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
605	chr6_ssto_hap7	2642575	2642576	rs1622406	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	HLA-B, HLA-C, XXbac-BPG248L24.12, MICB, USP8P1, RPL3P2, MIR6891, PPIAP9, XXbac-BPG16N22.5	rs1622406-T	0.03009027	7E-63	(EA, Alpha-2-macroglobulin receptor-associated protein)	2.011	[1.79-2.23] unit increase	Affymetrix [509946]	N
605	chr6_ssto_hap7	2642970	2642971	rs34872474	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.33		rs34872474-G	0.0764200000000001	2E-15		0.042707935	[0.032-0.053] unit decrease	Affymetrix [93095623] (imputed)	N
605	chr6_ssto_hap7	2643160	2643161	rs113021938	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	6p21.33		rs113021938-G	0.027345	2E-14		0.052308656	[0.039-0.066] unit decrease	Affymetrix [93095623] (imputed)	N
605	chr6_ssto_hap7	2644927	2644928	rs2854011	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.33		rs2854011-G	0.848	4E-80				Affymetrix [10369434] (imputed)	N
605	chr6_ssto_hap7	2644927	2644928	rs2854011	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p21.33		rs2854011-G	0.848	4E-55				Affymetrix [10369434] (imputed)	N
605	chr6_ssto_hap7	2645011	2645012	rs28380833	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs28380833-?		8E-9		1.8	[1.47-2.20]	Illumina [7645193] (imputed)	N
605	chr6_ssto_hap7	2645071	2645072	rs9265828	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6p21.33		rs9265828-G	0.569472	1E-13		0.026239738	[0.019-0.033] unit increase	Affymetrix [93095623] (imputed)	N
605	chr6_ssto_hap7	2645092	2645093	rs9265830	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs9265830-A	NR	5E-28		0.0333407	[0.027-0.039] unit decrease	Affymetrix [319769] (imputed)	N
605	chr6_ssto_hap7	2645092	2645093	rs9265830	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs9265830-A	NR	3E-26		0.0322127	[0.026-0.038] unit decrease	Affymetrix [319769] (imputed)	N
605	chr6_ssto_hap7	2645092	2645093	rs9265830	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs9265830-A	NR	1E-8		0.0174211	[0.011-0.023] unit decrease	Affymetrix [321114] (imputed)	N
605	chr6_ssto_hap7	2645092	2645093	rs9265830	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs9265830-A	NR	4E-25		0.0318177	[0.026-0.038] unit decrease	Affymetrix [321169] (imputed)	N
605	chr6_ssto_hap7	2645628	2645629	rs2394976	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to omega-3 fatty acids	115,006 European ancestry individuals	NA	6p21.33		rs2394976-G	0.838358	5E-9		0.0315075	[0.021-0.042] unit decrease	NR [11722792] (imputed)	N
605	chr6_ssto_hap7	2645775	2645776	rs2394977	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-B	rs2394977-G	NR	2E-12		0.0222252	[0.016-0.028] unit increase	Affymetrix [323858] (imputed)	N
605	chr6_ssto_hap7	2645775	2645776	rs2394977	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HLA-B	rs2394977-G	NR	4E-11		0.0207721	[0.015-0.027] unit increase	Affymetrix [127266] (imputed)	N
605	chr6_ssto_hap7	2645775	2645776	rs2394977	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-B	rs2394977-G	NR	6E-20		0.028162	[0.022-0.034] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_ssto_hap7	2645776	2645777	rs2256752	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	6p21.33	intergenic	rs2256752-C	0.3515	2E-13		0.02753249	[0.02-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
605	chr6_ssto_hap7	2646010	2646011	rs4521636	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-B	rs4521636-T	NR	2E-9		0.0186949	[0.013-0.025] unit decrease	Affymetrix [323858] (imputed)	N
605	chr6_ssto_hap7	2646010	2646011	rs4521636	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HLA-B	rs4521636-T	NR	2E-8		0.0174949	[0.011-0.024] unit decrease	Affymetrix [127266] (imputed)	N
605	chr6_ssto_hap7	2646010	2646011	rs4521636	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-B	rs4521636-T	NR	2E-16		0.0251493	[0.019-0.031] unit increase	Affymetrix [323123] (imputed)	N
605	chr6_ssto_hap7	2646044	2646045	rs3134792	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.33	intergenic	rs3134792-C	0.114	6E-72		3.93	[NR]	Illumina [242824]	N
605	chr6_ssto_hap7	2646044	2646045	rs3134792	18364390	Capon F	2008-03-25	Hum Mol Genet	Identification of ZNF313/RNF114 as a novel psoriasis susceptibility gene.	Psoriasis	318 European ancestry cases, 288 European ancestry controls	2,361 European ancestry cases, 1,927 European ancestry controls	6p21.33	HLA-C	rs3134792-?	NR	1E-9				Illumina [~ 408000]	N
605	chr6_ssto_hap7	2646256	2646257	rs2854008	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p21.33	NR	rs2854008-A	0.274988	5E-92				Affymetrix, Illumina [24332387] (imputed)	N
605	chr6_ssto_hap7	2646256	2646257	rs2854008	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	6p21.33	NR	rs2854008-A	0.293344	2E-97		0.04242	[0.038-0.046] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
605	chr6_ssto_hap7	2646749	2646750	rs2394982	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	6p21.33	intergenic	rs2394982-T	0.3056	8E-9		0.02209588	[0.015-0.03] unit increase	Affymetrix [~ 2500000] (imputed)	N
605	chr6_ssto_hap7	2646752	2646753	rs9265878	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs9265878-G	0.732	2E-102				Affymetrix [10369434] (imputed)	N
605	chr6_ssto_hap7	2646939	2646940	rs9265885	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	120,539 East Asian ancestry individuals	NA	6p21.33		rs9265885-C	0.425161	1E-20		0.0356702	[0.028-0.043] unit decrease	Illumina [13474682] (imputed)	N
605	chr6_ssto_hap7	2646977	2646978	rs9265888	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs9265888-T	NR	2E-8		0.0163341	[0.011-0.022] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_ssto_hap7	2647190	2647191	rs9265902	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.33		rs9265902-G	0.721	5E-33				Affymetrix [10369434] (imputed)	N
605	chr6_ssto_hap7	2647190	2647191	rs9265902	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-B	rs9265902-A	NR	1E-9		0.0207461	[0.014-0.027] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_ssto_hap7	2647190	2647191	rs9265902	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs9265902-A	NR	1E-8		0.0181136	[0.012-0.024] unit increase	Affymetrix [321169] (imputed)	N
605	chr6_ssto_hap7	2647321	2647322	rs9265906	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-B	rs9265906-C	NR	5E-8		0.0168982	[0.011-0.023] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_ssto_hap7	2647321	2647322	rs9265906	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs9265906-C	NR	4E-8		0.0157447	[0.01-0.021] unit increase	Affymetrix [321169] (imputed)	N
605	chr6_ssto_hap7	2647786	2647787	rs12175330	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-B	rs12175330-T	NR	1E-13		0.0240282	[0.018-0.03] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_ssto_hap7	2647786	2647787	rs12175330	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs12175330-T	NR	1E-8		0.0170347	[0.011-0.023] unit increase	Affymetrix [321169] (imputed)	N
605	chr6_ssto_hap7	2647826	2647827	rs3016018	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.33		rs3016018-C	NR	2E-14		1.132	[1.097-1.169]	Affymetrix [7846216] (imputed)	N
605	chr6_ssto_hap7	2648366	2648367	rs2507999	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Keratinocyte cancer (MTAG)	at least 18,538 European ancestry cases, at least 340,302 European ancestry controls	NA	6p21.33	HLA-B	rs2507999-A	0.328281	1E-10		1.0638298	[1.04-1.08]	Affymetrix [7600000] (imputed)	N
605	chr6_ssto_hap7	2648753	2648754	rs9265940	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs9265940-G	NR	3E-19		0.0271089	[0.021-0.033] unit increase	Affymetrix [321016] (imputed)	N
605	chr6_ssto_hap7	2648778	2648779	rs9265942	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	6p21.33		rs9265942-C	0.871684	4E-12		0.0455219	[0.033-0.058] unit decrease	NR [11722792] (imputed)	N
605	chr6_ssto_hap7	2648820	2648820	rs150481781	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	6p21.33		rs150481781-AGAGCTTCCCAATTGCT	NR	1E-30		0.0258	[0.021-0.03] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
605	chr6_ssto_hap7	2648940	2648941	rs28771425	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	CX3CL1 levels	21,758 European ancestry individuals	9,173 individuals	6p21.33		rs28771425-A	0.43	5E-19		0.099	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
605	chr6_ssto_hap7	2649059	2649060	rs9265954	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	6p21.33	HLA-B	rs9265954-T	0.0497	2E-18		0.0604	[0.047-0.074] unit increase	Affymetrix [18391927] (imputed)	N
605	chr6_ssto_hap7	2649083	2649084	rs9265956	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.33		rs9265956-T	0.324	2E-45				Affymetrix [10369434] (imputed)	N
605	chr6_ssto_hap7	2649126	2649126	rs111721712	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6p21.33		rs111721712-C	0.530439	2E-12		0.0293352	[0.021-0.037] unit increase	NR [11722792] (imputed)	N
605	chr6_ssto_hap7	2649126	2649126	rs111721712	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6p21.33		rs111721712-C	0.530439	1E-12		0.0294594	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
605	chr6_ssto_hap7	2649126	2649126	rs111721712	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	6p21.33		rs111721712-C	0.534	9E-42		0.15	[0.13-0.17] % increase	Affymetrix [NR] (imputed)	N
605	chr6_ssto_hap7	2649126	2649126	rs111721712	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs111721712-CT	NR	8E-10		0.0174035	[0.012-0.023] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_ssto_hap7	2649126	2649126	rs111721712	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	6p21.33	intergenic	rs111721712-CT	0.4708	1E-26		0.03814722	[0.031-0.045] unit increase	Affymetrix [~ 2500000] (imputed)	N
605	chr6_ssto_hap7	2649230	2649231	rs116685461	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	6p21.33	MHC	rs116685461-G	0.8755	3E-6		1.06	[1.04-1.09]	Affymetrix, Illumina [16900397] (imputed)	N
605	chr6_ssto_hap7	2649230	2649231	rs116685461	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	6p21.33	intergenic	rs116685461-A	0.098	5E-11		0.04047215	[0.028-0.053] unit decrease	Affymetrix [~ 2500000] (imputed)	N
605	chr6_ssto_hap7	2649347	2649348	rs9265965	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium HDL	115,082 European ancestry individuals	NA	6p21.33		rs9265965-T	0.867699	1E-14		0.0453236	[0.034-0.057] unit increase	NR [11722792] (imputed)	N
605	chr6_ssto_hap7	2649366	2649367	rs2523625	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Body fat percentage variance	341,632 European ancestry individuals	NA	6p21.33	HLA-B	rs2523625-?	NR	3E-10				NR [5554549] (imputed)	N
605	chr6_ssto_hap7	2649381	2649382	rs9265968	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	6p21.33	HLA-B	rs9265968-A	0.866272	1E-21		0.0201268	[0.016-0.024] unit decrease	Affymetrix [12370749]	N
605	chr6_ssto_hap7	2650178	2650179	rs116438126	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	6p21.33	intergenic	rs116438126-T	0.0084	6E-18		0.1721088	[0.13-0.21] unit increase	Affymetrix [~ 2500000] (imputed)	N
605	chr6_ssto_hap7	2650289	2650290	rs200291258	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atopic dermatitis	4,296 East Asian ancestry cases, 163,807 East Asian ancestry controls	NA	6p21.33		rs200291258-A	0.179174296	6E-15		0.25656497	[0.19-0.32] unit decrease	Illumina [13428180] (imputed)	N
605	chr6_ssto_hap7	2650478	2650479	rs5014819	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs5014819-T	NR	3E-15		0.0226584	[0.017-0.028] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_ssto_hap7	2650629	2650630	rs2923008	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in diabetes	70,762 European ancestry individuals, 20,967 African American individuals	NA	6p21.33	HLA-B	rs2923008-T	0.106	2E-12		1.017	[0.73-1.3] unit decrease	Affymetrix [NR] (imputed)	N
605	chr6_ssto_hap7	2652334	2652335	rs34213790	28062682	Carr DF	2017-01-05	J Antimicrob Chemother	Genome-wide association study of nevirapine hypersensitivity in a sub-Saharan African HIV-infected population.	Nevirapine-induced hypersensitivity in HIV	151 Sub-saharan African ancestry cases, 182 Sub-saharan African ancestry controls	62 Sub-Saharan African ancestry cases, 60 Sub-Saharan African ancestry controls	6p21.33	HLA-B	rs34213790-A	0.37	7E-7		2.06	[1.55-2.74]	Illumina [14218511] (imputed)	N
605	chr6_ssto_hap7	2652385	2652386	rs9266043	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-B	rs9266043-A	NR	8E-29		0.035895	[0.03-0.042] unit increase	Affymetrix [323123] (imputed)	N
605	chr6_ssto_hap7	2652540	2652541	rs2596505	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p21.33	NR	rs2596505-T	0.1681	1E-8		0.009	[0.0059-0.0121] unit decrease	NR [7666894] (imputed)	N
605	chr6_ssto_hap7	2652727	2652728	rs9391774	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	6p21.33	HLA-B	rs9391774-A	0.070171	8E-17		0.03854895	[0.029-0.048] unit decrease	Affymetrix [93095623] (imputed)	N
605	chr6_ssto_hap7	2652834	2652835	rs73728881	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.33		rs73728881-C	0.408	8E-101				Affymetrix [10369434] (imputed)	N
605	chr6_ssto_hap7	2652911	2652912	rs2442730	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	6p21.33	HLA-B	rs2442730-A	0.723193	2E-43		0.03767923	[0.032-0.043] unit decrease	Affymetrix [93095623] (imputed)	N
605	chr6_ssto_hap7	2652976	2652977	rs9266059	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs9266059-C	NR	7E-15		0.0219789	[0.016-0.028] unit decrease	Affymetrix [319769] (imputed)	N
605	chr6_ssto_hap7	2652976	2652977	rs9266059	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs9266059-C	NR	1E-13		0.0210357	[0.015-0.027] unit decrease	Affymetrix [319769] (imputed)	N
605	chr6_ssto_hap7	2652976	2652977	rs9266059	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs9266059-C	NR	3E-12		0.0197526	[0.014-0.025] unit increase	Affymetrix [321016] (imputed)	N
605	chr6_ssto_hap7	2652976	2652977	rs9266059	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-B	rs9266059-C	NR	2E-12		0.0216682	[0.016-0.028] unit increase	Affymetrix [323123] (imputed)	N
605	chr6_ssto_hap7	2652976	2652977	rs9266059	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs9266059-C	NR	3E-12		0.0199124	[0.014-0.026] unit decrease	Affymetrix [321169] (imputed)	N
605	chr6_ssto_hap7	2653145	2653146	rs9266063	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs9266063-A	NR	1E-9		0.017108	[0.012-0.023] unit increase	Affymetrix [321016] (imputed)	N
605	chr6_ssto_hap7	2653151	2653152	rs34429926	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	6p21.33	HLA-C, HLA-B	rs34429926-?	NR	3E-29		0.04099494	[0.034-0.048] unit increase	Illumina [27896057] (imputed)	N
605	chr6_ssto_hap7	2653242	2653243	rs9405083	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-B	rs9405083-T	NR	5E-10		0.0221393	[0.015-0.029] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_ssto_hap7	2653339	2653340	rs4644106	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs4644106-C	NR	9E-14		0.0259517	[0.019-0.033] unit decrease	Affymetrix [319769] (imputed)	N
605	chr6_ssto_hap7	2653339	2653340	rs4644106	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs4644106-C	NR	9E-14		0.0259699	[0.019-0.033] unit decrease	Affymetrix [319769] (imputed)	N
605	chr6_ssto_hap7	2653339	2653340	rs4644106	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-B	rs4644106-C	NR	5E-10		0.0235741	[0.016-0.031] unit increase	Affymetrix [323123] (imputed)	N
605	chr6_ssto_hap7	2653356	2653357	rs28380929	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pneumonia	7,423 East Asian ancestry cases, 171,303 East Asian ancestry controls	NA	6p21.33		rs28380929-T	0.015924804	5E-22		0.70876914	[0.56-0.85] unit increase	Illumina [13429980] (imputed)	N
605	chr6_ssto_hap7	2653635	2653636	rs9266077	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p21.33	XXbac-BPG248L24.12	rs9266077-G	0.149984	4E-50		0.05959745	[0.052-0.067] unit increase	Affymetrix [93095623] (imputed)	N
605	chr6_ssto_hap7	2653652	2653653	rs2442725	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs2442725-T	NR	5E-8		0.0167286	[0.011-0.023] unit decrease	Affymetrix [319769] (imputed)	N
605	chr6_ssto_hap7	2653652	2653653	rs2442725	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs2442725-T	NR	4E-8		0.0167925	[0.011-0.023] unit decrease	Affymetrix [319769] (imputed)	N
605	chr6_ssto_hap7	2653679	2653680	rs36057735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium HDL	115,082 European ancestry individuals	NA	6p21.33		rs36057735-C	0.80097	9E-14		0.0357792	[0.026-0.045] unit increase	NR [11722792] (imputed)	N
605	chr6_ssto_hap7	2653679	2653680	rs36057735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in HDL	115,082 European ancestry individuals	NA	6p21.33		rs36057735-C	0.80097	8E-14		0.0346386	[0.026-0.044] unit increase	NR [11722792] (imputed)	N
605	chr6_ssto_hap7	2653679	2653680	rs36057735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in HDL	115,082 European ancestry individuals	NA	6p21.33		rs36057735-C	0.80097	2E-13		0.0344232	[0.025-0.044] unit increase	NR [11722792] (imputed)	N
605	chr6_ssto_hap7	2653679	2653680	rs36057735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	6p21.33		rs36057735-C	0.80097	5E-14		0.035387	[0.026-0.045] unit increase	NR [11722792] (imputed)	N
605	chr6_ssto_hap7	2653679	2653680	rs36057735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium HDL particles	115,082 European ancestry individuals	NA	6p21.33		rs36057735-C	0.80097	9E-14		0.0354958	[0.026-0.045] unit increase	NR [11722792] (imputed)	N
605	chr6_ssto_hap7	2653679	2653680	rs36057735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium HDL	115,082 European ancestry individuals	NA	6p21.33		rs36057735-C	0.80097	3E-12		0.0333993	[0.024-0.043] unit increase	NR [11722792] (imputed)	N
605	chr6_ssto_hap7	2653679	2653680	rs36057735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	6p21.33		rs36057735-C	0.80097	9E-13		0.0339999	[0.025-0.043] unit increase	NR [11722792] (imputed)	N
605	chr6_ssto_hap7	2653679	2653680	rs36057735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein A1 levels	115,082 European ancestry individuals	NA	6p21.33		rs36057735-C	0.80097	4E-14		0.0357836	[0.027-0.045] unit increase	NR [11722792] (imputed)	N
605	chr6_ssto_hap7	2653679	2653680	rs36057735	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	6p21.33	HLA-B	rs36057735-C	0.800848	3E-35		0.0304388	[0.026-0.035] unit increase	Affymetrix [NR] (imputed)	N
605	chr6_ssto_hap7	2653679	2653680	rs36057735	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling nervous	373,121 European ancestry individuals	NA	6p21.33	NR	rs36057735-C	0.195566	1E-8		5.69	z score increase	NR [10847151] (imputed)	N
605	chr6_ssto_hap7	2653679	2653680	rs36057735	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.33	C6orf15, CCHCR1, CDSN, HCG22, HCG26, HCG27, HCP5, HLA-B, HLA-C, MICA, MIR6891, POU5F1, PSORS1C1, PSORS1C2, PSORS1C3, TCF19	rs36057735-C		2E-12		1.1	[1.07-1.13]	Affymetrix, Illumina [NR]	N
605	chr6_ssto_hap7	2654064	2654065	rs2507993	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large HDL	115,082 European ancestry individuals	NA	6p21.33		rs2507993-C	0.51967	4E-10		0.0257964	[0.018-0.034] unit increase	NR [11722792] (imputed)	N
605	chr6_ssto_hap7	2654064	2654065	rs2507993	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large HDL	115,082 European ancestry individuals	NA	6p21.33		rs2507993-C	0.51967	2E-9		0.0247775	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
605	chr6_ssto_hap7	2654064	2654065	rs2507993	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large HDL particles	115,082 European ancestry individuals	NA	6p21.33		rs2507993-C	0.51967	9E-10		0.0253075	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
605	chr6_ssto_hap7	2654064	2654065	rs2507993	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	6p21.33		rs2507993-C	0.51967	4E-11		0.0271386	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
605	chr6_ssto_hap7	2654064	2654065	rs2507993	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	6p21.33		rs2507993-C	0.51967	4E-11		0.0272976	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
605	chr6_ssto_hap7	2654264	2654265	rs9266089	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Chickenpox	107,769 European ancestry cases, 15,982 European ancestry controls	NA	6p21.33	HLA-B	rs9266089-G	0.85	1E-10		1.12	[1.1-1.14]	Illumina [at least 560000] (imputed)	N
605	chr6_ssto_hap7	2654293	2654294	rs2442719	26039976	Wei Z	2015-06-17	Sci Rep	Genome-Wide Association Studies of HIV-1 Host Control in Ethnically Diverse Chinese Populations.	HIV-1 viral setpoint	326 Han Chinese ancestry cases, 58 Dai Chinese ancestry cases, 40 Jingpo Chinese ancestry cases, 83 Uygur Chinese ancestry cases, 11 Hui Chinese ancestry cases, 20 East Asian cases	NA	6p21.33	HLA-C, HLA-B	rs2442719-A	0.4161	8E-7	(Han)	0.3298	unit decrease	Illumina [up to 528294]	N
605	chr6_ssto_hap7	2654317	2654318	rs2523616	30850646	Tziotzios C	2019-03-08	Nat Commun	Genome-wide association study in frontal fibrosing alopecia identifies four susceptibility loci including HLA-B*07:02.	Frontal fibrosing alopecia	1,016 European ancestry cases, 4,145 European ancestry controls		6p21.33	HLA-B	rs2523616-T	0.19	8E-119		4.73	[4.15-5.39]	Illumina [~ 8000000] (imputed)	N
605	chr6_ssto_hap7	2654376	2654377	rs117598591	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	20,917 European ancestry cases, 440,906 European ancestry controls, 14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	6p21.33		rs117598591-A	NR	3E-20		0.2416	[0.19-0.29] unit increase	Affymetrix, Illumina [25841367] (imputed)	N
605	chr6_ssto_hap7	2654400	2654401	rs11753309	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Non-albumin protein levels	98,538 Japanese ancestry individuals	NA	6p21.33	HLA-C, HLA-B	rs11753309-?	NR	1E-12		0.07675	[0.056-0.098] unit increase novel	Illumina [6108953] (imputed)	N
605	chr6_ssto_hap7	2654400	2654401	rs11753309	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Albumin-globulin ratio	98,626 Japanese ancestry individuals	NA	6p21.33	HLA-C, HLA-B	rs11753309-?	NR	4E-14		0.08157	[0.06-0.103] unit decrease novel	Illumina [6108953] (imputed)	N
605	chr6_ssto_hap7	2654409	2654410	rs2523614	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Naive CD4-CD8- T cell %T cell	3,427 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs2523614-C	0.26364	6E-9		0.1522	[0.1-0.2] unit decrease	Illumina [18349913] (imputed)	N
605	chr6_ssto_hap7	2654409	2654410	rs2523614	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	6p21.33	HLA-C, MICA	rs2523614-T	0.689	6E-10		0.0237097	[0.016-0.031] unit increase	Illumina [13519193] (imputed)	N
605	chr6_ssto_hap7	2654409	2654410	rs2523614	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.33	HLA-C, MICA	rs2523614-T	0.689	2E-7	(men)	0.0253993	[0.016-0.035] unit increase	Illumina [13520550] (imputed)	N
605	chr6_ssto_hap7	2654417	2654418	rs62396264	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs62396264-G	NR	1E-8		0.042766	[0.028-0.057] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_ssto_hap7	2654604	2654605	rs35735140	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	6p21.33	XXbac-BPG248L24.12	rs35735140-C	0.0632	9E-33		0.08825474	[0.074-0.103] unit increase	Affymetrix [~ 2500000] (imputed)	N
605	chr6_ssto_hap7	2654969	2654970	rs2596501	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs2596501-T	NR	2E-16		0.0231594	[0.018-0.029] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_ssto_hap7	2654969	2654970	rs2596501	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs2596501-T	NR	3E-15		0.0222583	[0.017-0.028] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_ssto_hap7	2654969	2654970	rs2596501	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs2596501-T	NR	7E-10		0.0173579	[0.012-0.023] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_ssto_hap7	2654969	2654970	rs2596501	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-B	rs2596501-T	NR	5E-11		0.0201678	[0.014-0.026] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_ssto_hap7	2654969	2654970	rs2596501	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HLA-B	rs2596501-T	NR	1E-14		0.0219866	[0.016-0.028] unit increase	Affymetrix [321169] (imputed)	N
605	chr6_ssto_hap7	2655025	2655026	rs2596500	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in ever smokers	23,223 European ancestry cases,  16,964 European ancestry controls	NA	6p21.33	HLA-B	rs2596500-C	0.110809826	2E-15		1.2094321	[1.153908741-1.267627282]	Illumina [10439017] (imputed)	N
605	chr6_ssto_hap7	2655025	2655026	rs2596500	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	6p21.33	NR	rs2596500-A	NR	8E-20		1.18	[NR]	Illumina [7158791] (imputed)	N
605	chr6_ssto_hap7	2655085	2655086	rs9266095	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-B	rs9266095-G	NR	1E-9		0.0211771	[0.014-0.028] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_ssto_hap7	2655165	2655166	rs12196740	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.33	NR	rs12196740-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
605	chr6_ssto_hap7	2655183	2655184	rs9378247	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-B	rs9378247-A	NR	3E-11		0.0265014	[0.019-0.034] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_ssto_hap7	2655282	2655283	rs2844584	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	6p21.33	NR	rs2844584-?	NR	2E-21	(conditional)			Affymetrix [15688218] (imputed)	N
605	chr6_ssto_hap7	2655415	2655416	rs3177747	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PRSS57	5,358 Icelandic ancestry individuals	NA	6p21.33		rs3177747-A	0.01609	7E-71		1.26085	[1.12-1.4] unit increase	Illumina [7506463] (imputed)	N
605	chr6_ssto_hap7	2657537	2657537	rs5875313	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	6p21.33	HLA-B	rs5875313-?	NR	2E-22		0.039188	[0.031-0.047] unit decrease	Illumina [13520550] (imputed)	N
605	chr6_ssto_hap7	2657965	2657965	rs760342210	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	74,970 East Asian ancestry individuals	NA	6p21.33		rs760342210-GCC	0.376979	5E-8		0.0270505	[0.017-0.037] unit increase	Illumina [13465896] (imputed)	N
605	chr6_ssto_hap7	2659080	2659081	rs9266229	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.33	NR	rs9266229-C	NR	4E-9		0.023	unit decrease	Affymetrix [at least 7091467] (imputed)	N
605	chr6_ssto_hap7	2659080	2659081	rs9266229	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.33	NR	rs9266229-C	0.53	1E-9	(EA)	0.026	unit decrease	Affymetrix [at least 7091467] (imputed)	N
605	chr6_ssto_hap7	2659080	2659081	rs9266229	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.33	NR	rs9266229-C	NR	3E-10		0.027	unit decrease	Affymetrix [at least 7091467] (imputed)	N
605	chr6_ssto_hap7	2659080	2659081	rs9266229	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.33	NR	rs9266229-C	0.53	2E-10	(EA)	0.03	unit decrease	Affymetrix [at least 7091467] (imputed)	N
605	chr6_ssto_hap7	2659080	2659081	rs9266229	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.33	NR	rs9266229-C	NR	1E-6		0.021	unit decrease	Affymetrix [at least 7091467] (imputed)	N
605	chr6_ssto_hap7	2659080	2659081	rs9266229	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.33	NR	rs9266229-C	0.53	1E-6	(EA)	0.023	unit decrease	Affymetrix [at least 7091467] (imputed)	N
605	chr6_ssto_hap7	2659098	2659099	rs9266230	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	6p21.33	NR	rs9266230-G	0.359851	1E-35		0.0263621	[0.022-0.031] unit decrease	NR [NR]	N
605	chr6_ssto_hap7	2659199	2659200	rs114777460	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mumps	31,227 European ancestry cases, 54,153 European ancestry controls	NA	6p21.33	NR	rs114777460-?	NR	4E-6		0.1022	[0.058-0.146] unit decrease	Illumina [at least 560000] (imputed)	N
605	chr6_ssto_hap7	2659277	2659278	rs9266237	31527586	An J	2019-09-16	Nat Commun	Gastroesophageal reflux GWAS identifies risk loci that also associate with subsequent severe esophageal diseases.	Gastroesophageal reflux disease	80,265 European and unknown ancestry cases, 305,011 European and unknown ancestry controls	NA	6p21.33	MICA, HLA-B	rs9266237-C	NR	2E-11		1.0409149	[1.03-1.05]	Affymetrix, Illumina [up to 7600000] (imputed)	N
605	chr6_ssto_hap7	2659448	2659449	rs9266244	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs9266244-G	NR	2E-20		0.0316292	[0.025-0.038] unit decrease	Affymetrix [323858] (imputed)	N
605	chr6_ssto_hap7	2659448	2659449	rs9266244	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	6p21.33	HLA-B	rs9266244-A	0.7077	1E-94		0.0427	[0.039-0.047] unit decrease	Affymetrix [18391927] (imputed)	N
605	chr6_ssto_hap7	2659458	2659459	rs9266245	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs9266245-A	NR	1E-17		0.0293064	[0.023-0.036] unit decrease	Affymetrix [127266] (imputed)	N
605	chr6_ssto_hap7	2659458	2659459	rs9266245	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs9266245-A	NR	4E-9		0.0199304	[0.013-0.027] unit decrease	Affymetrix [323858] (imputed)	N
605	chr6_ssto_hap7	2659458	2659459	rs9266245	30003630	Minica CC	2018-07-13	Addiction	GENOME-WIDE ASSOCIATION META-ANALYSIS OF AGE AT FIRST CANNABIS USE.	Cannabis use (age at onset)	24,953 European ancestry individuals	3,735 European ancestry individuals	6p21.33	NR	rs9266245-A	0.2655	5E-6		0.06	[0.033-0.087] unit decrease	Affymetrix, Illumina, Perlegen [6163759] (imputed)	N
605	chr6_ssto_hap7	2659501	2659502	rs74618856	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs74618856-T	NR	3E-13		0.0210177	[0.015-0.027] unit decrease	Affymetrix [321169] (imputed)	N
605	chr6_ssto_hap7	2659514	2659515	rs9266248	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs9266248-G	NR	5E-11		0.0206568	[0.014-0.027] unit decrease	Affymetrix [323858] (imputed)	N
605	chr6_ssto_hap7	2659514	2659515	rs9266248	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs9266248-G	NR	6E-10		0.0194387	[0.013-0.026] unit decrease	Affymetrix [127266] (imputed)	N
605	chr6_ssto_hap7	2659548	2659549	rs9266250	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs9266250-A	NR	5E-20		0.0288475	[0.023-0.035] unit increase	Affymetrix [323123] (imputed)	N
605	chr6_ssto_hap7	2659603	2659604	rs9266253	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs9266253-G	NR	8E-10		0.021803	[0.015-0.029] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_ssto_hap7	2659603	2659604	rs9266253	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs9266253-G	NR	6E-10		0.0219864	[0.015-0.029] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_ssto_hap7	2659607	2659608	rs28694041	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs28694041-G	NR	4E-17		0.0237224	[0.018-0.029] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_ssto_hap7	2659636	2659637	rs9266255	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6p21.33		rs9266255-G	0.51289	7E-12		0.0273638	[0.02-0.035] unit increase	NR [11722792] (imputed)	N
605	chr6_ssto_hap7	2659636	2659637	rs9266255	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs9266255-A	NR	1E-9		0.0189485	[0.013-0.025] unit increase	Affymetrix [323858] (imputed)	N
605	chr6_ssto_hap7	2659636	2659637	rs9266255	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs9266255-A	NR	2E-20		0.0284303	[0.022-0.034] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_ssto_hap7	2659636	2659637	rs9266255	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	6p21.33	HLA-B	rs9266255-A	0.485918	3E-10		0.015893243	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
605	chr6_ssto_hap7	2659642	2659643	rs9266257	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	6p21.33		rs9266257-G	0.332679	3E-14		0.0320363	[0.024-0.04] unit increase	NR [11722792] (imputed)	N
605	chr6_ssto_hap7	2659642	2659643	rs9266257	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	6p21.33		rs9266257-G	0.332679	2E-18		0.036957	[0.029-0.045] unit increase	NR [11722792] (imputed)	N
605	chr6_ssto_hap7	2659642	2659643	rs9266257	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	6p21.33	Intergenic	rs9266257-G	0.2867	3E-10		0.0158	[0.011-0.021] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
605	chr6_ssto_hap7	2659642	2659643	rs9266257	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	6p21.33	Intergenic	rs9266257-C	0.6642	1E-12	(MTAG)	0.0175	[0.013-0.022] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
605	chr6_ssto_hap7	2659837	2659838	rs9266271	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.33		rs9266271-T	0.645	8E-27				Affymetrix [10369434] (imputed)	N
605	chr6_ssto_hap7	2659837	2659838	rs9266271	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs9266271-C	NR	6E-18		0.0254246	[0.02-0.031] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_ssto_hap7	2659837	2659838	rs9266271	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs9266271-C	NR	6E-17		0.0246745	[0.019-0.03] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_ssto_hap7	2659837	2659838	rs9266271	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs9266271-C	NR	1E-12		0.0209457	[0.015-0.027] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_ssto_hap7	2659837	2659838	rs9266271	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs9266271-C	NR	3E-8		0.0177807	[0.011-0.024] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_ssto_hap7	2659837	2659838	rs9266271	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs9266271-C	NR	2E-13		0.0220232	[0.016-0.028] unit increase	Affymetrix [321169] (imputed)	N
605	chr6_ssto_hap7	2659838	2659839	rs62396273	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs62396273-T	NR	1E-15		0.0313037	[0.024-0.039] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_ssto_hap7	2659838	2659839	rs62396273	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs62396273-T	NR	2E-8		0.023758	[0.015-0.032] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_ssto_hap7	2659886	2659887	rs73390208	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	6p21.33		rs73390208-C	0.728652	1E-9		0.028278	[0.019-0.037] unit decrease	NR [11722792] (imputed)	N
605	chr6_ssto_hap7	2659886	2659887	rs73390208	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs73390208-T	NR	2E-8		0.0177817	[0.012-0.024] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_ssto_hap7	2659921	2659922	rs4947311	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hypothyroidism	1,114 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	6p21.33		rs4947311-T	0.840267659	5E-8		0.32545814	[0.21-0.44] unit increase	Illumina [13429045] (imputed)	N
605	chr6_ssto_hap7	2659921	2659922	rs4947311	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs4947311-T	NR	3E-8		0.0173305	[0.011-0.023] unit increase	Affymetrix [127266] (imputed)	N
605	chr6_ssto_hap7	2659921	2659922	rs4947311	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	6p21.33	HLA-B	rs4947311-T	0.491335	1E-26		0.023138076	[0.019-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
605	chr6_ssto_hap7	2659921	2659922	rs4947311	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	6p21.33	HLA-B	rs4947311-T	0.4917	6E-26		0.03719869	[0.03-0.044] unit decrease	Affymetrix [~ 2500000] (imputed)	N
605	chr6_ssto_hap7	2659942	2659942	rs112261624	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p21.33	HLA-B	rs112261624-ATTG	0.126731	3E-11		0.025527913	[0.018-0.033] unit increase	Affymetrix [93095623] (imputed)	N
605	chr6_ssto_hap7	2659978	2659979	rs2596474	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs2596474-G	NR	1E-8		0.0167607	[0.011-0.023] unit increase	Affymetrix [321169] (imputed)	N
605	chr6_ssto_hap7	2660006	2660007	rs9405084	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs9405084-T	NR	1E-13		0.0243425	[0.018-0.031] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_ssto_hap7	2660006	2660007	rs9405084	32488134	Auckland K	2020-06-02	Sci Rep	The Human Leukocyte Antigen Locus and Rheumatic Heart Disease Susceptibility in South Asians and Europeans.	Rheumatic heart disease	510 Northern Indian cases, 344 Northern Indian controls, 162 Fijian Indian cases, 147 Fijian Indian controls	150 European ancestry cases, 1,309 European ancestry controls	6p21.33	HLA-B	rs9405084-?		3E-6		1.36	[1.19-1.55]	Illumina [6925553] (imputed)	N
605	chr6_ssto_hap7	2660006	2660007	rs9405084	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	Composite immunoglobulin trait (IgA/IgM)	14,183 Icelandic ancestry individuals	2,146 Swedish ancestry individuals	6p21.33	HLA-B	rs9405084-T	0.3546	8E-13		0.09	NR SD units decrease	Illumina [21568490] (imputed)	N
605	chr6_ssto_hap7	2660027	2660028	rs9266276	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	6p21.33	NR	rs9266276-?	NR	1E-10		0.0815	[0.057-0.106] unit decrease	Illumina [at least 560000] (imputed)	N
605	chr6_ssto_hap7	2660044	2660045	rs9378248	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6p21.33		rs9378248-G	0.658186	5E-12		0.0289275	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
605	chr6_ssto_hap7	2660044	2660045	rs9378248	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to monounsaturated fatty acids	115,006 European ancestry individuals	NA	6p21.33		rs9378248-G	0.658178	1E-9		0.0253981	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
605	chr6_ssto_hap7	2660044	2660045	rs9378248	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of monounsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	6p21.33		rs9378248-G	0.658178	5E-12		0.0287948	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
605	chr6_ssto_hap7	2660044	2660045	rs9378248	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	6p21.33		rs9378248-G	0.658186	6E-9		0.0251651	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
605	chr6_ssto_hap7	2660044	2660045	rs9378248	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6p21.33		rs9378248-G	0.658186	2E-15		0.0323775	[0.024-0.04] unit increase	NR [11722792] (imputed)	N
605	chr6_ssto_hap7	2660044	2660045	rs9378248	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6p21.33		rs9378248-G	0.658186	3E-12		0.0285178	[0.021-0.036] unit increase	NR [11722792] (imputed)	N
605	chr6_ssto_hap7	2660044	2660045	rs9378248	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6p21.33		rs9378248-G	0.658186	2E-15		0.0327076	[0.025-0.041] unit increase	NR [11722792] (imputed)	N
605	chr6_ssto_hap7	2660044	2660045	rs9378248	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6p21.33		rs9378248-G	0.658186	5E-12		0.028241	[0.02-0.036] unit increase	NR [11722792] (imputed)	N
605	chr6_ssto_hap7	2660044	2660045	rs9378248	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs9378248-A	NR	3E-12		0.0207417	[0.015-0.027] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_ssto_hap7	2660044	2660045	rs9378248	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	6p21.33	HLA-B	rs9378248-G	0.657666	3E-54		0.0324826	[0.028-0.037] unit decrease	Affymetrix [NR] (imputed)	N
605	chr6_ssto_hap7	2660044	2660045	rs9378248	31589552	Lind L	2019-10-07	Metab Syndr Relat Disord	Genome-Wide Association Study of the Metabolic Syndrome in UK Biobank.	Metabolic syndrome	291,107 European ancestry individuals	NA	6p21.33	HLA-B	rs9378248-A	0.339668	2E-10		0.0440684	[0.031-0.058] unit increase	Affymetrix [9463307] (imputed)	N
605	chr6_ssto_hap7	2660044	2660045	rs9378248	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	6p21.33	Intergenic	rs9378248-A	0.386	7E-10	(MTAG)	0.0105	[0.0072-0.0138] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
605	chr6_ssto_hap7	2660044	2660045	rs9378248	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6p21.33	Intergenic	rs9378248-A	0.3659	8E-10	(MTAG)	0.0086	[0.0059-0.0113] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
605	chr6_ssto_hap7	2660678	2660679	rs2395475	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs2395475-G	NR	1E-18		0.0259014	[0.02-0.032] unit decrease	Affymetrix [321169] (imputed)	N
605	chr6_ssto_hap7	2660718	2660719	rs2523591	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p21.33	HLA-B	rs2523591-G	0.58	2E-27		1.14	[1.13-1.16]	Illumina [at least 560000] (imputed)	N
605	chr6_ssto_hap7	2660792	2660793	rs116666910	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	6p21.33	HLA-B	rs116666910-A	0.042838	3E-36		0.07363684	[0.062-0.085] unit increase	Affymetrix [93095623] (imputed)	N
605	chr6_ssto_hap7	2660822	2660823	rs2523590	35215271	Almandil NB	2022-01-27	Pharmaceuticals (Basel)	Integration of Transcriptome and Exome Genotyping Identifies Significant Variants with Autism Spectrum Disorder.	Autism spectrum disorder	70 Arab ancestry cases, 132 Arab ancestry controls	NA	6p21.33	NA	rs2523590-G	0.4059	2E-6		0.2661	[0.1511-0.4689]	Illumina [243345]	N
605	chr6_ssto_hap7	2660822	2660823	rs2523590	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Anxiety	at least 23,606 European ancestry cases, at least 113,351 European ancestry controls	624,615 European ancestry cases, 1,310,854 European ancestry controls	6p21.33	XXbac, BPG248L24.12	rs2523590-T	0.3002	2E-17		0.020998826	[0.015-0.027] unit decrease	NR [9417325] (imputed)	N
605	chr6_ssto_hap7	2660822	2660823	rs2523590	21051598	Pereyra F	2010-11-04	Science	The major genetic determinants of HIV-1 control affect HLA class I peptide presentation.	HIV-1 control	516 European cases, 1,196 European controls, 341 African American cases, 892 African American controls, 117 Hispanic cases, 560 Hispanic controls	NA	6p21.33	HLA-B	rs2523590-C	0.164	2E-13	(AA)	2.4	[NR]	Illumina [1384048] (imputed)	N
605	chr6_ssto_hap7	2660936	2660937	rs2249935	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs2249935-A	NR	2E-11		0.02495	[0.018-0.032] unit decrease	Affymetrix [323858] (imputed)	N
605	chr6_ssto_hap7	2660936	2660937	rs2249935	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs2249935-A	NR	2E-10		0.0236711	[0.016-0.031] unit decrease	Affymetrix [127266] (imputed)	N
605	chr6_ssto_hap7	2660936	2660937	rs2249935	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs2249935-A	NR	6E-9		0.0213066	[0.014-0.028] unit increase	Affymetrix [323123] (imputed)	N
605	chr6_ssto_hap7	2660936	2660937	rs2249935	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	6p21.33	HLA-B	rs2249935-A	0.226813	5E-14		0.022285966	[0.016-0.028] unit increase	Affymetrix [93095623] (imputed)	N
605	chr6_ssto_hap7	2661092	2661093	rs2523589	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2523589-G	0.504575	7E-11		0.0266546	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
605	chr6_ssto_hap7	2661092	2661093	rs2523589	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CDH7	5,355 Icelandic ancestry individuals	NA	6p21.33		rs2523589-G	0.4994	3E-12		0.128281	[0.092-0.164] unit increase	Illumina [7506463] (imputed)	N
605	chr6_ssto_hap7	2661092	2661093	rs2523589	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs2523589-T	NR	4E-15		0.0220143	[0.017-0.028] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_ssto_hap7	2661092	2661093	rs2523589	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs2523589-T	NR	5E-9		0.0182205	[0.012-0.024] unit increase	Affymetrix [323858] (imputed)	N
605	chr6_ssto_hap7	2661092	2661093	rs2523589	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs2523589-T	NR	8E-14		0.0209932	[0.015-0.026] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_ssto_hap7	2661092	2661093	rs2523589	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs2523589-T	NR	3E-10		0.0176998	[0.012-0.023] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_ssto_hap7	2661092	2661093	rs2523589	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs2523589-T	NR	2E-15		0.0225538	[0.017-0.028] unit increase	Affymetrix [321169] (imputed)	N
605	chr6_ssto_hap7	2661092	2661093	rs2523589	33608531	Wu Y	2021-02-19	Nat Commun	GWAS of peptic ulcer disease implicates Helicobacter pylori infection, other gastrointestinal disorders and depression.	Gastroesophageal reflux disease	54,854 European ancestry cases, 401,473 European ancestry controls	NA	6p21.33	NR	rs2523589-G	0.5	5E-13		0.95	[NR]	NR [8546065] (imputed)	N
605	chr6_ssto_hap7	2661092	2661093	rs2523589	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (salicylic acid and derivatives)	61,583 European ancestry cases, 50,427 European ancestry controls	NA	6p21.33	HLA-B	rs2523589-T	0.495166	2E-8		0.044395193	[0.029-0.06] unit increase	Affymetrix [7288503] (imputed)	N
605	chr6_ssto_hap7	2661092	2661093	rs2523589	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.33		rs2523589-T	0.5109049999999999	2E-54		1.0677866	[1.06-1.08]	Affymetrix, Illumina [9851866] (imputed)	N
605	chr6_ssto_hap7	2661158	2661159	rs2523587	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	6p21.33	Intergenic	rs2523587-T	0.3377	3E-8	(MTAG)	0.0105	[0.0068-0.0142] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
605	chr6_ssto_hap7	2661418	2661419	rs1811197	27157822	Hallberg P	2016-05-03	Lancet Diabetes Endocrinol	Genetic variants associated with antithyroid drug-induced agranulocytosis: a genome-wide association study in a European population.	Non-chemotherapy drug induced agranulocytosis	222 European ancestry cases, 12 cases, 5,170 European ancestry controls	NA	6p21.33	NR	rs1811197-?	NR	9E-13	(adjusted for rs114291795)	2.4	[1.89-3.06]	Illumina [9380034] (imputed)	N
605	chr6_ssto_hap7	2661427	2661428	rs116812356	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	6p21.33	HLA-B	rs116812356-C	0.084787	1E-13		0.029957736	[0.022-0.038] unit increase	Affymetrix [93095623] (imputed)	N
605	chr6_ssto_hap7	2661459	2661460	rs9378249	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p21.33	NR	rs9378249-T	0.936677	4E-192				Affymetrix, Illumina [17210439] (imputed)	N
605	chr6_ssto_hap7	2661459	2661460	rs9378249	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	6p21.33	NR	rs9378249-T	0.935134	6E-196		0.116523	[0.11-0.12] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
605	chr6_ssto_hap7	2661459	2661460	rs9378249	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	6p21.33	HLA-B	rs9378249-G	0.0655	1E-53		0.112675	[0.098-0.127] unit decrease	Affymetrix [~ 2500000] (imputed)	N
605	chr6_ssto_hap7	2661459	2661460	rs9378249	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	6p21.33	HLA-B	rs9378249-G	0.0649	7E-35		0.08896168	[0.075-0.103] unit increase	Affymetrix [~ 2500000] (imputed)	N
605	chr6_ssto_hap7	2661459	2661460	rs9378249	21254220	Jiang Y	2011-02-01	Genet Epidemiol	Propensity score-based nonparametric test revealing genetic variants underlying bipolar disorder.	Bipolar disorder	1,868 European ancestry cases, 2,938 European ancestry controls	NA	6p21.33	NR	rs9378249-?	NR	1E-8	(addtive)			Affymetrix [NR]	N
605	chr6_ssto_hap7	2661481	2661482	rs2596477	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p21.33	NR	rs2596477-A	0.124	2E-14	(IFNAR2_of_CD20p)			Illumina [5084123] (imputed)	N
605	chr6_ssto_hap7	2661500	2661501	rs116010992	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in IDL	115,082 European ancestry individuals	NA	6p21.33		rs116010992-G	0.944836	2E-8		0.0511498	[0.033-0.069] unit increase	NR [11722792] (imputed)	N
605	chr6_ssto_hap7	2661500	2661501	rs116010992	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in IDL	115,082 European ancestry individuals	NA	6p21.33		rs116010992-G	0.944836	7E-9		0.0521223	[0.034-0.07] unit increase	NR [11722792] (imputed)	N
605	chr6_ssto_hap7	2661500	2661501	rs116010992	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in IDL	115,082 European ancestry individuals	NA	6p21.33		rs116010992-G	0.944836	7E-9		0.0521034	[0.034-0.07] unit increase	NR [11722792] (imputed)	N
605	chr6_ssto_hap7	2661515	2661516	rs28695590	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs28695590-C	NR	1E-9		0.0254929	[0.017-0.034] unit increase	Affymetrix [323858] (imputed)	N
605	chr6_ssto_hap7	2661515	2661516	rs28695590	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs28695590-C	NR	2E-9		0.0254506	[0.017-0.034] unit increase	Affymetrix [127266] (imputed)	N
605	chr6_ssto_hap7	2661653	2661654	rs2523583	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	6p21.33	XXbac-BPG248L24.12	rs2523583-A	0.7315	5E-7		0.0528	[0.032-0.073] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
605	chr6_ssto_hap7	2661663	2661664	rs7767033	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p21.33		rs7767033-C	0.911783	6E-11		0.0460216	[0.032-0.06] unit decrease	NR [11722792] (imputed)	N
605	chr6_ssto_hap7	2661663	2661664	rs7767033	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p21.33		rs7767033-C	0.911783	3E-10		0.0446058	[0.031-0.058] unit increase	NR [11722792] (imputed)	N
605	chr6_ssto_hap7	2662275	2662276	rs2523579	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs2523579-T	NR	5E-20		0.0268404	[0.021-0.033] unit increase	Affymetrix [321016] (imputed)	N
605	chr6_ssto_hap7	2662275	2662276	rs2523579	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs2523579-T	NR	6E-23		0.0313944	[0.025-0.038] unit increase	Affymetrix [323123] (imputed)	N
605	chr6_ssto_hap7	2662300	2662301	rs2523578	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.33	XXbac-BPG248L24.12	rs2523578-A	0.735	6E-12		0.0561	[0.04-0.072] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
605	chr6_ssto_hap7	2662514	2662515	rs9266289	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.33	NR	rs9266289-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
605	chr6_ssto_hap7	2662644	2662645	rs7772305	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs7772305-G	NR	1E-17		0.0277083	[0.021-0.034] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_ssto_hap7	2662644	2662645	rs7772305	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs7772305-G	NR	4E-10		0.0221253	[0.015-0.029] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_ssto_hap7	2662746	2662747	rs2523573	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	6p21.33	NR	rs2523573-C	0.083499	2E-9		0.077368595	[0.052-0.103] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
605	chr6_ssto_hap7	2662746	2662747	rs2523573	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	6p21.33	NR	rs2523573-C	0.083499	3E-11		0.07532035	[0.053-0.098] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
605	chr6_ssto_hap7	2662787	2662788	rs114029601	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p21.33		rs114029601-?	NR	2E-13		0.0823935	[0.06-0.104] unit increase	Affymetrix [20259828] (imputed)	N
605	chr6_ssto_hap7	2662787	2662788	rs114029601	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs114029601-T	0.024	1E-175	(alpha-2-macroglobulin receptor-associated protein, LRPAP1.3640.14.3)	2.11	[1.97-2.25] unit increase	Affymetrix [10572788] (imputed)	N
605	chr6_ssto_hap7	2662787	2662788	rs114029601	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs114029601-T	0.024	1E-132	(alpha-2-macroglobulin receptor-associated protein, LRPAP1.8829.4.3)	1.88	[1.72-2.04] unit increase	Affymetrix [10572788] (imputed)	N
605	chr6_ssto_hap7	2662851	2662852	rs7772614	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs7772614-A	NR	2E-17		0.0245966	[0.019-0.03] unit decrease	Affymetrix [319769] (imputed)	N
605	chr6_ssto_hap7	2662851	2662852	rs7772614	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs7772614-A	NR	4E-16		0.0235888	[0.018-0.029] unit decrease	Affymetrix [319769] (imputed)	N
605	chr6_ssto_hap7	2662851	2662852	rs7772614	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs7772614-A	NR	9E-15		0.0224619	[0.017-0.028] unit increase	Affymetrix [321016] (imputed)	N
605	chr6_ssto_hap7	2662851	2662852	rs7772614	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs7772614-A	NR	3E-22		0.0306127	[0.024-0.037] unit increase	Affymetrix [323123] (imputed)	N
605	chr6_ssto_hap7	2662851	2662852	rs7772614	32358547	Persyn E	2020-05-01	Nat Commun	Genome-wide association study of MRI markers of cerebral small vessel disease in 42,310 participants.	White matter integrity (mean diffusivity)	17,467 European ancestry individuals	NA	6p21.33	HLA-B, HLA-S	rs7772614-A	0.379354	8E-10		0.272022	[0.19-0.36] unit decrease	Affymetrix [NR] (imputed)	N
605	chr6_ssto_hap7	2662893	2662894	rs2428493	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.33		rs2428493-C	0.59	3E-29				Affymetrix [10369434] (imputed)	N
605	chr6_ssto_hap7	2662893	2662894	rs2428493	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p21.33		rs2428493-C	0.59	2E-11				Affymetrix [10369434] (imputed)	N
605	chr6_ssto_hap7	2662893	2662894	rs2428493	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs2428493-A	NR	1E-8		0.0162701	[0.011-0.022] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_ssto_hap7	2662893	2662894	rs2428493	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs2428493-A	NR	2E-8		0.0160422	[0.01-0.022] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_ssto_hap7	2662893	2662894	rs2428493	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs2428493-A	NR	3E-8		0.0172826	[0.011-0.023] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_ssto_hap7	2662893	2662894	rs2428493	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs2428493-A	NR	4E-8		0.0158728	[0.01-0.022] unit increase	Affymetrix [321169] (imputed)	N
605	chr6_ssto_hap7	2663049	2663050	rs2596544	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs2596544-A	NR	4E-11		0.0250182	[0.018-0.032] unit decrease	Affymetrix [323858] (imputed)	N
605	chr6_ssto_hap7	2663049	2663050	rs2596544	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs2596544-A	NR	2E-10		0.0239529	[0.017-0.031] unit decrease	Affymetrix [127266] (imputed)	N
605	chr6_ssto_hap7	2663049	2663050	rs2596544	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.33	NR	rs2596544-?	NR	7E-14				Affymetrix [~ 8270000] (imputed)	N
605	chr6_ssto_hap7	2663123	2663124	rs2428491	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG248L24.12	rs2428491-T	NR	7E-9		0.018086	[0.012-0.024] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_ssto_hap7	2663123	2663124	rs2428491	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs2428491-T	NR	3E-8		0.0160184	[0.01-0.022] unit increase	Affymetrix [321169] (imputed)	N
605	chr6_ssto_hap7	2663224	2663225	rs76518703	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.33		rs76518703-G	0.051012999999999975	4E-21		1.0960608	[1.08-1.11]	Affymetrix, Illumina [9851866] (imputed)	N
605	chr6_ssto_hap7	2663236	2663237	rs62396280	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p21.33		rs62396280-G	0.938983	7E-13		0.0589889	[0.043-0.075] unit increase	NR [11722792] (imputed)	N
605	chr6_ssto_hap7	2663236	2663237	rs62396280	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p21.33		rs62396280-G	0.938983	3E-13		0.0597272	[0.044-0.076] unit increase	NR [11722792] (imputed)	N
605	chr6_ssto_hap7	2663236	2663237	rs62396280	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	6p21.33		rs62396280-G	0.938983	5E-13		0.0604292	[0.044-0.077] unit increase	NR [11722792] (imputed)	N
605	chr6_ssto_hap7	2663401	2663402	rs2596547	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MICB	5,339 Icelandic ancestry individuals	NA	6p21.33		rs2596547-T	0.08274	1E-46		0.447301	[0.39-0.51] unit decrease	Illumina [7506463] (imputed)	N
605	chr6_ssto_hap7	2663450	2663451	rs2523571	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Sjogren's syndrome	1,296 European ancestry cases, 482,717 European ancestry controls, 303 East Asian ancestry cases, 175,599 East Asian ancestry controls	NA	6p21.33		rs2523571-A	NR	6E-28		0.709	[0.58-0.84] unit increase	Affymetrix, Illumina [25844664] (imputed)	N
605	chr6_ssto_hap7	2663493	2663494	rs2523570	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG248L24.12	rs2523570-T	NR	1E-9		0.0207915	[0.014-0.027] unit increase	Affymetrix [321114] (imputed)	N
605	chr6_ssto_hap7	2663493	2663494	rs2523570	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	HLA-B, XXbac-BPG248L24.12, HLA-C, DHFRP2, RNU6-283P	rs2523570-T	0.1732125	3E-22	(EA, MHC class I polypeptide-related sequence A)	0.5698	[0.46-0.68] unit increase	Affymetrix [509946]	N
605	chr6_ssto_hap7	2663774	2663775	rs2523567	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	DHFRP2	rs2523567-G	NR	1E-8		0.019102	[0.013-0.026] unit decrease	Affymetrix [321169] (imputed)	N
605	chr6_ssto_hap7	2664377	2664378	rs2523562	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	6p21.33		rs2523562-C	0.75	5E-23				Affymetrix [10369434] (imputed)	N
605	chr6_ssto_hap7	2664377	2664378	rs2523562	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	6p21.33	DHFRP2	rs2523562-T	0.248438	2E-53		0.043959104	[0.038-0.05] unit decrease	Affymetrix [93095623] (imputed)	N
605	chr6_ssto_hap7	2664377	2664378	rs2523562	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p21.33	NR	rs2523562-T	0.231793	1E-216				Affymetrix, Illumina [23467995] (imputed)	N
605	chr6_ssto_hap7	2664377	2664378	rs2523562	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	6p21.33	NR	rs2523562-T	0.245752	2E-218		0.068474	[0.064-0.073] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
605	chr6_ssto_hap7	2664455	2664456	rs2523561	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	6p21.33		rs2523561-T	0.0841863	4E-21		0.22455621	[0.18-0.27] unit increase	Illumina [13427135] (imputed)	N
605	chr6_ssto_hap7	2664547	2664548	rs9266329	34642315	Ferreiro-Iglesias A	2021-10-12	Nat Commun	Germline determinants of humoral immune response to HPV-16 protect against oropharyngeal cancer.	Human papilloma virus 16 positive oropharyngeal cancer	1,078 European ancestry cases, 5,256 European ancestry controls	NA	6p21.33		rs9266329-A	NR	1E-12		0.6064		Illumina [7574753] (imputed)	N
605	chr6_ssto_hap7	2664728	2664729	rs2523559	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	145,505 East Asian ancestry individuals	NA	6p21.33		rs2523559-A	0.856226	1E-8		0.0270292	[0.018-0.036] unit decrease	Illumina [13477770] (imputed)	N
605	chr6_ssto_hap7	2664796	2664797	rs2523558	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	DHFRP2	rs2523558-G	NR	5E-17		0.0239075	[0.018-0.029] unit decrease	Affymetrix [319769] (imputed)	N
605	chr6_ssto_hap7	2664796	2664797	rs2523558	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	DHFRP2	rs2523558-G	NR	1E-15		0.022827	[0.017-0.028] unit decrease	Affymetrix [319769] (imputed)	N
605	chr6_ssto_hap7	2664796	2664797	rs2523558	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	DHFRP2	rs2523558-G	NR	2E-18		0.025264	[0.02-0.031] unit decrease	Affymetrix [321169] (imputed)	N
605	chr6_ssto_hap7	2665008	2665009	rs2523557	26190474	Dai Y	2015-07-20	Sci Rep	Performance of genetic risk factors in prediction of trichloroethylene induced hypersensitivity syndrome.	Trichloroethylene-induced hypersensitivity syndrome	98 Han Chinese ancestry cases, 98 Han Chinese ancestry trichloroethylene-tolerant controls	Up to 74 Han Chinese ancestry cases, up to 1,661 Han Chinese ancestry trichloroethylene-tolerant controls	6p21.33	HLA-B, MICA	rs2523557-C	0.13	9E-35		7.33	[5.34-10.07]	Illumina [1392644]	N
605	chr6_ssto_hap7	2665251	2665252	rs4959062	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	DHFRP2	rs4959062-G	NR	7E-12		0.0197814	[0.014-0.025] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_ssto_hap7	2665267	2665268	rs9266344	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antithrombotic agents)	67,653 European ancestry cases, 85,986 European ancestry controls, 54,220 East Asian ancestry cases, 124,506 East Asian ancestry controls	NA	6p21.33		rs9266344-C	NR	1E-15		0.0792	[0.06-0.099] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
605	chr6_ssto_hap7	2665449	2665450	rs4959063	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol minus HDL-C levels	115,082 European ancestry individuals	NA	6p21.33		rs4959063-C	0.79261	4E-9		0.0298904	[0.02-0.04] unit decrease	NR [11722792] (imputed)	N
605	chr6_ssto_hap7	2665449	2665450	rs4959063	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Remnant cholesterol (non-HDL, non-LDL -cholesterol)	115,082 European ancestry individuals	NA	6p21.33		rs4959063-C	0.79261	8E-10		0.0312509	[0.021-0.041] unit decrease	NR [11722792] (imputed)	N
605	chr6_ssto_hap7	2665449	2665450	rs4959063	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in IDL	115,082 European ancestry individuals	NA	6p21.33		rs4959063-C	0.79261	2E-8		0.0277784	[0.018-0.037] unit decrease	NR [11722792] (imputed)	N
605	chr6_ssto_hap7	2665449	2665450	rs4959063	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	6p21.33		rs4959063-C	0.79261	1E-9		0.0304695	[0.021-0.04] unit decrease	NR [11722792] (imputed)	N
605	chr6_ssto_hap7	2665449	2665450	rs4959063	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	6p21.33		rs4959063-C	0.79261	2E-10		0.0327736	[0.023-0.043] unit decrease	NR [11722792] (imputed)	N
605	chr6_ssto_hap7	2665449	2665450	rs4959063	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	6p21.33		rs4959063-C	0.79261	2E-10		0.0324692	[0.022-0.042] unit decrease	NR [11722792] (imputed)	N
605	chr6_ssto_hap7	2665449	2665450	rs4959063	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small LDL particles	115,082 European ancestry individuals	NA	6p21.33		rs4959063-C	0.79261	1E-8		0.0290147	[0.019-0.039] unit decrease	NR [11722792] (imputed)	N
605	chr6_ssto_hap7	2665449	2665450	rs4959063	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium LDL particles	115,082 European ancestry individuals	NA	6p21.33		rs4959063-C	0.79261	2E-8		0.0287151	[0.019-0.039] unit decrease	NR [11722792] (imputed)	N
605	chr6_ssto_hap7	2665449	2665450	rs4959063	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large LDL particles	115,082 European ancestry individuals	NA	6p21.33		rs4959063-C	0.79261	6E-10		0.0315332	[0.022-0.042] unit decrease	NR [11722792] (imputed)	N
605	chr6_ssto_hap7	2665449	2665450	rs4959063	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of LDL particles	115,082 European ancestry individuals	NA	6p21.33		rs4959063-C	0.79261	1E-9		0.0312676	[0.021-0.041] unit decrease	NR [11722792] (imputed)	N
605	chr6_ssto_hap7	2665449	2665450	rs4959063	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium VLDL	115,082 European ancestry individuals	NA	6p21.33		rs4959063-C	0.79261	2E-9		0.0304401	[0.021-0.04] unit decrease	NR [11722792] (imputed)	N
605	chr6_ssto_hap7	2665449	2665450	rs4959063	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in VLDL	115,082 European ancestry individuals	NA	6p21.33		rs4959063-C	0.79261	7E-11		0.0332965	[0.023-0.043] unit decrease	NR [11722792] (imputed)	N
605	chr6_ssto_hap7	2665449	2665450	rs4959063	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	6p21.33		rs4959063-C	0.79261	1E-8		0.0281437	[0.018-0.038] unit decrease	NR [11722792] (imputed)	N
605	chr6_ssto_hap7	2665449	2665450	rs4959063	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	6p21.33		rs4959063-C	0.79261	2E-10		0.0323143	[0.022-0.042] unit decrease	NR [11722792] (imputed)	N
605	chr6_ssto_hap7	2665449	2665450	rs4959063	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein B levels	115,082 European ancestry individuals	NA	6p21.33		rs4959063-C	0.79261	1E-9		0.0311161	[0.021-0.041] unit decrease	NR [11722792] (imputed)	N
605	chr6_ssto_hap7	2665580	2665581	rs2523554	33649182	Penova M	2021-03-01	Proc Natl Acad Sci U S A	Genome wide association study of HTLV-1-associated myelopathy/tropical spastic paraparesis in the Japanese population.	HTLV-1 associated myelopathy	731 Japanese ancestry cases, 846 Japanese ancestry controls	NA	6p21.33		rs2523554-C	0.11	3E-8		1.83	[1.48-2.27]	Illumina [126394]	N
605	chr6_ssto_hap7	2665638	2665640	rs9279167	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	6p21.33	DHFRP2	rs9279167-G	0.2829	2E-24		0.04621161	[0.037-0.055] unit decrease	Affymetrix [~ 2500000] (imputed)	N
605	chr6_ssto_hap7	2665707	2665708	rs2523552	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	6p21.33	DHFRP2	rs2523552-T	0.2263	1E-75		0.07846555	[0.07-0.087] unit decrease	Affymetrix [~ 2500000] (imputed)	N
605	chr6_ssto_hap7	2665730	2665731	rs2844583	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	High density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	6p21.33	HLA-B, MICA	rs2844583-?		9E-10		0.0428	[0.029-0.057] unit increase	Illumina [31500000] (imputed)	N
605	chr6_ssto_hap7	2666278	2666279	rs2844582	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	DHFRP2	rs2844582-T	NR	2E-10		0.022422	[0.016-0.029] unit increase	Affymetrix [321169] (imputed)	N
605	chr6_ssto_hap7	2666279	2666280	rs2523548	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6p21.33	DHFRP2	rs2523548-A	0.433296	1E-28		0.029001132	[0.024-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
605	chr6_ssto_hap7	2666491	2666492	rs9266359	25249183	Lu X	2014-09-23	Hum Mol Genet	Genome-wide association study in Chinese identifies novel loci for blood pressure and hypertension.	Systolic blood pressure	11,816 Han Chinese ancestry individuals	69,146 Han Chinese ancestry individuals	6p21.33	HLA-B	rs9266359-C	0.6	7E-6		0.44	[0.24-0.64] unit increase	Affymetrix, Illumina [2485448] (imputed)	N
605	chr6_ssto_hap7	2666491	2666492	rs9266359	25249183	Lu X	2014-09-23	Hum Mol Genet	Genome-wide association study in Chinese identifies novel loci for blood pressure and hypertension.	Diastolic blood pressure	11,816 Han Chinese ancestry individuals	69,146 Han Chinese ancestry individuals	6p21.33	HLA-B	rs9266359-C	0.6	2E-7		0.29	[0.17-0.41] unit increase	Affymetrix, Illumina [2485448] (imputed)	N
605	chr6_ssto_hap7	2666671	2666672	rs9266361	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (salicylic acid and derivatives)	41,461 East Asian ancestry cases, 137,265 East Asian ancestry controls	NA	6p21.33		rs9266361-T	0.812543574	5E-17		0.09066886	[0.07-0.112] unit decrease	Illumina [13429980] (imputed)	N
605	chr6_ssto_hap7	2666671	2666672	rs9266361	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	6p21.33		rs9266361-T	0.812543574	4E-14		0.07905273	[0.059-0.1] unit decrease	Illumina [13134967] (imputed)	N
605	chr6_ssto_hap7	2666671	2666672	rs9266361	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antithrombotic agents)	54,220 East Asian ancestry cases, 124,506 East Asian ancestry controls	NA	6p21.33		rs9266361-T	0.812543574	2E-16		0.08336314	[0.064-0.103] unit decrease	Illumina [13429980] (imputed)	N
605	chr6_ssto_hap7	2666671	2666672	rs9266361	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	DHFRP2	rs9266361-T	NR	1E-16		0.026028	[0.02-0.032] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_ssto_hap7	2666671	2666672	rs9266361	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.33		rs9266361-T	0.37995999999999996	5E-8		1.0236442	[1.01-1.03]	Affymetrix, Illumina [9851866] (imputed)	N
605	chr6_ssto_hap7	2666672	2666673	rs2523546	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Squamous cell lung carcinoma	8,350 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	6p21.33	NR	rs2523546-A	NR	9E-8		1.24	[1.14-1.34]	NR [NR] (imputed)	N
605	chr6_ssto_hap7	2666847	2666848	rs2428490	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	DHFRP2	rs2428490-A	NR	5E-10		0.0232656	[0.016-0.031] unit decrease	Affymetrix [127266] (imputed)	N
605	chr6_ssto_hap7	2666855	2666856	rs140949683	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GZMB	5,361 Icelandic ancestry individuals	NA	6p21.33		rs140949683-G	0.1074	3E-33		0.361549	[0.3-0.42] unit increase	Illumina [7506463] (imputed)	N
605	chr6_ssto_hap7	2667198	2667199	rs62395421	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	6p21.33	RNU6-283P	rs62395421-A	0.0803	2E-15		0.05211951	[0.039-0.065] unit decrease	Affymetrix [~ 2500000] (imputed)	N
605	chr6_ssto_hap7	2667717	2667718	rs2844578	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	DHFRP2	rs2844578-C	NR	3E-11		0.0246412	[0.017-0.032] unit decrease	Affymetrix [323858] (imputed)	N
605	chr6_ssto_hap7	2668619	2668620	rs6457402	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	DHFRP2	rs6457402-T	NR	1E-11		0.0242388	[0.017-0.031] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_ssto_hap7	2668700	2668701	rs2844575	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2844575-T	0.536322	3E-9		0.0243122	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
605	chr6_ssto_hap7	2668700	2668701	rs2844575	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	6p21.33		rs2844575-T	0.536	2E-12				Affymetrix [10369434] (imputed)	N
605	chr6_ssto_hap7	2668700	2668701	rs2844575	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs2844575-T	0.536	4E-31				Affymetrix [10369434] (imputed)	N
605	chr6_ssto_hap7	2668700	2668701	rs2844575	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.33		rs2844575-T	0.536	2E-53				Affymetrix [10369434] (imputed)	N
605	chr6_ssto_hap7	2668700	2668701	rs2844575	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	DHFRP2	rs2844575-C	NR	1E-11		0.0207917	[0.015-0.027] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_ssto_hap7	2669091	2669092	rs17193122	26151496	Chen PL	2015-07-07	Nat Commun	Genetic determinants of antithyroid drug-induced agranulocytosis by human leukocyte antigen genotyping and genome-wide association study.	Thionamide-induced agranulocytosis in Graves' disease	21 East Asian ancestry cases with agranulocytosis, 662 East Asian ancestry cases without agranulocytosis	21 East Asian ancestry cases with agranulocytosis, 546 East Asian ancestry cases without agranulocytosis	6p21.33	HLA-B*38:02	rs17193122-A	0.047	4E-27	(trend)	9.59	[5.78-15.90] (allelic)	Affymetrix [522980]	N
605	chr6_ssto_hap7	2669546	2669547	rs57989216	31219150	Ekenberg C	2019-06-13	J Infect Dis	Single nucleotide polymorphisms in HLA alleles are associated with HIV-1 viral load in demographically diverse, ART-naive participants from the START trial.	Pre-treatment viral load in HIV-1 infection	1,398 European ancestry individuals, 572 Black individuals, 418 Hispanic individuals, 13 Asian ancestry individuals, 39 individuals	NA	6p21.33	HLA-B, MIR6891	rs57989216-A	0.053	7E-13		0.4	[0.28-0.52] unit decrease	Affymetrix [339439]	N
605	chr6_ssto_hap7	2669656	2669657	rs2922994	25569183	Vijai J	2015-01-08	Nat Commun	A genome-wide association study of marginal zone lymphoma shows association to the HLA region.	Marginal zone lymphoma	825 European ancestry cases, 6,221 European ancestry controls	456 European ancestry cases, 906 European ancestry controls	6p21.33	HLA-B, TCF19	rs2922994-G	0.113	2E-9		1.64	[1.39-1.92]	Illumina [611856]	N
605	chr6_ssto_hap7	2669752	2669753	rs146683910	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Iritis	2,616 European ancestry cases, 478,126 European ancestry controls, 110 East Asian ancestry cases, 175,543 East Asian ancestry controls	NA	6p21.33		rs146683910-T	NR	5E-191		1.8349	[1.71-1.96] unit increase	Affymetrix, Illumina [25844196] (imputed)	N
605	chr6_ssto_hap7	2669855	2669856	rs7743761	20062062	Reveille JD	2010-01-10	Nat Genet	Genome-wide association study of ankylosing spondylitis identifies non-MHC susceptibility loci.	Ankylosing spondylitis	2,053 European ancestry cases, 5,140 European ancestry controls	898 European ancestry cases, 1,518 European ancestry controls	6p21.33	MHC	rs7743761-?	NR	5E-304				Illumina [288662]	N
605	chr6_ssto_hap7	2670173	2670174	rs9266406	23001997	Hou S	2012-12-06	Arthritis Rheum	Identification of a susceptibility locus in STAT4 for Behcet's disease in Han Chinese in a genome-wide association study.	Behcet's disease	147 Han Chinese ancestry cases, 951 Han Chinese ancestry controls	554 Han Chinese ancestry cases, 1,159 Han Chinese ancestry controls	6p21.33	MICA, DHFRP2, MICB	rs9266406-?	.40	2E-10		2.29	[1.77-2.95]	Affymetrix [661736]	N
605	chr6_ssto_hap7	2670903	2670904	rs2853989	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of granulocytes	170,223 European ancestry individuals	NA	6p21.33	DHFRP2, RNU6-283P	rs2853989-G	0.3405	3E-10		0.02321877	[0.016-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
605	chr6_ssto_hap7	2670964	2670965	rs2922996	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TEK	5,362 Icelandic ancestry individuals	NA	6p21.33		rs2922996-C	0.4661	1E-15		0.150071	[0.11-0.19] unit decrease	Illumina [7506463] (imputed)	N
605	chr6_ssto_hap7	2670964	2670965	rs2922996	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Angiopoietin-1 receptor levels	21,758 European ancestry individuals	9,173 individuals	6p21.33		rs2922996-C	0.46	2E-101		0.1892	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
605	chr6_ssto_hap7	2670968	2670969	rs9266428	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	6p21.33	DHFRP2, RNU6-283P	rs9266428-A	0.1804	9E-36		0.05778517	[0.049-0.067] unit increase	Affymetrix [~ 2500000] (imputed)	N
605	chr6_ssto_hap7	2670968	2670969	rs9266428	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	6p21.33	DHFRP2, RNU6-283P	rs9266428-A	0.1804	3E-36		0.05807499	[0.049-0.067] unit increase	Affymetrix [~ 2500000] (imputed)	N
605	chr6_ssto_hap7	2671830	2671831	rs9266444	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	142,940 East Asian ancestry individuals	NA	6p21.33	NR	rs9266444-A	0.237855	2E-10		0.029197	[0.02-0.038] SD units increase	Affymetrix, Illumina [16289021] (imputed)	N
605	chr6_ssto_hap7	2672083	2672084	rs9501574	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	RNU6-283P	rs9501574-C	NR	1E-8		0.023019	[0.015-0.031] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_ssto_hap7	2672583	2672584	rs2853986	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	RNU6-283P	rs2853986-C	NR	8E-20		0.0399121	[0.031-0.048] unit decrease	Affymetrix [323858] (imputed)	N
605	chr6_ssto_hap7	2672583	2672584	rs2853986	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	RNU6-283P	rs2853986-C	NR	7E-18		0.037756	[0.029-0.046] unit decrease	Affymetrix [127266] (imputed)	N
605	chr6_ssto_hap7	2673815	2673816	rs2844559	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	AL671883.1	rs2844559-T	NR	2E-16		0.0350697	[0.027-0.043] unit increase	Affymetrix [323123] (imputed)	N
605	chr6_ssto_hap7	2673898	2673899	rs9266490	24326010	Xavier JM	2013-12-10	Ann Rheum Dis	FUT2: filling the gap between genes and environment in Behcet's disease?	Behcet's disease	292 Iranian ancestry cases, 294 Iranian ancestry controls	684 Iranian ancestry cases, 532 Iranian ancestry controls, 1,215 Turkish ancestry cases, 1,278 Turkish ancestry controls	6p21.33	HLA-B	rs9266490-G	0.279	2E-44	(Greater Middle Eastern)	2.73	[2.35-3.17]	Affymetrix [868254]	N
605	chr6_ssto_hap7	2674649	2674650	rs2263321	30566020	Fukaya E	2018-12-01	Circulation	Clinical and Genetic Determinants of Varicose Veins.	Varicose veins	9,577 British ancestry cases, 327,959 British ancestry controls	NA	6p21.33	NR	rs2263321-A	0.33	8E-9		0.091	[0.06-0.122] unit decrease	Affymetrix [10972371] (imputed)	N
605	chr6_ssto_hap7	2675234	2675235	rs9266520	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	AL671883.1	rs9266520-C	NR	6E-10		0.0193551	[0.013-0.025] unit increase	Affymetrix [323858] (imputed)	N
605	chr6_ssto_hap7	2675234	2675235	rs9266520	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	AL671883.1	rs9266520-C	NR	1E-8		0.0177737	[0.012-0.024] unit increase	Affymetrix [127266] (imputed)	N
605	chr6_ssto_hap7	2675396	2675397	rs9501380	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	AL671883.1	rs9501380-A	NR	4E-8		0.0310676	[0.02-0.042] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_ssto_hap7	2675511	2675512	rs2523517	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	6p21.33	FGFR3P1	rs2523517-A	0.3597	3E-17		0.0314362	[0.024-0.039] unit increase	Affymetrix [~ 2500000] (imputed)	N
605	chr6_ssto_hap7	2675627	2675628	rs2523515	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	6p21.33	FGFR3P1	rs2523515-A	0.3451	6E-13		0.02824211	[0.021-0.036] unit decrease	Affymetrix [~ 2500000] (imputed)	N
605	chr6_ssto_hap7	2675895	2675896	rs9501583	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.33		rs9501583-C	0.811	3E-18				Affymetrix [10369434] (imputed)	N
605	chr6_ssto_hap7	2675918	2675919	rs5013221	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.33		rs5013221-C	0.371	1E-26				Affymetrix [10369434] (imputed)	N
605	chr6_ssto_hap7	2676224	2676225	rs2523644	30226566	Yamada Y	2018-09-04	Int J Mol Med	Identification of 13 novel susceptibility loci for early-onset myocardial infarction, hypertension, or chronic kidney disease.	Myocardial infarction	1,152 Japanese ancestry cases, 5,774 Japanese ancestry controls	NA	6p21.33	Intergenic	rs2523644-G		5E-7		1.49		Illumina [31245]	N
605	chr6_ssto_hap7	2676521	2676522	rs2844551	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	AL671883.1	rs2844551-G	NR	2E-9		0.0207536	[0.014-0.028] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_ssto_hap7	2678654	2678655	rs116488202	25200001	Robinson PC	2014-09-08	Arthritis Rheumatol	Genetic dissection of acute anterior uveitis reveals similarities and differences in associations observed with ankylosing spondylitis.	Acute anterior uveitis (with or without ankylosing spondylitis)	238 European ancestry primary acute anterior uveitis cases, 1,199 European ancestry cases with acute anterior uveitis and ankylosing spondylitis, 9,564 European ancestry controls	NR	6p21.33	HLA-B	rs116488202-?	NR	1E-300		16.8	[15.0-18.7]	Illumina [at least 106525] (imputed)	N
605	chr6_ssto_hap7	2678654	2678655	rs116488202	23749187	Cortes A	2013-07-01	Nat Genet	Identification of multiple risk variants for ankylosing spondylitis through high-density genotyping of immune-related loci.	Ankylosing spondylitis	9,069 European ancestry cases, 1,550 East Asian ancestry cases, 13,578 European ancestry controls, 1,567 East Asian ancestry controls	NA	6p21.33	HLA-B*27	rs116488202-?	NR	1E-100	(EA)	46.0		Illumina [128935]	N
605	chr6_ssto_hap7	2679605	2679606	rs9266613	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.33		rs9266613-T	0.805	8E-22				Affymetrix [10369434] (imputed)	N
605	chr6_ssto_hap7	2679906	2679907	rs9266618	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	FGFR3P1	rs9266618-C	NR	4E-9		0.0286873	[0.019-0.038] unit decrease	Affymetrix [319769] (imputed)	N
605	chr6_ssto_hap7	2679906	2679907	rs9266618	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	FGFR3P1	rs9266618-C	NR	6E-9		0.0284984	[0.019-0.038] unit decrease	Affymetrix [319769] (imputed)	N
605	chr6_ssto_hap7	2679906	2679907	rs9266618	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	FGFR3P1	rs9266618-C	NR	2E-8		0.0280195	[0.018-0.038] unit decrease	Affymetrix [321169] (imputed)	N
605	chr6_ssto_hap7	2680185	2680186	rs2523627	31375628	Tengvall K	2019-08-02	Proc Natl Acad Sci U S A	Molecular mimicry between Anoctamin 2 and Epstein-Barr virus nuclear antigen 1 associates with multiple sclerosis risk.	Anti-anoctamin 2 antibody levels	11,936 European ancestry individuals	NA	6p21.33	NR	rs2523627-C	NR	9E-6		0.05	[0.026-0.074] unit increase	Illumina [615763]	N
605	chr6_ssto_hap7	2680297	2680298	rs4959072	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	FGFR3P1	rs4959072-C	NR	9E-10		0.0233595	[0.016-0.031] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_ssto_hap7	2680342	2680343	rs6909636	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	FGFR3P1	rs6909636-A	NR	1E-8		0.018048	[0.012-0.024] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_ssto_hap7	2680364	2680365	rs2442736	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	FGFR3P1	rs2442736-C	NR	2E-9		0.0200243	[0.014-0.027] unit decrease	Affymetrix [319769] (imputed)	N
605	chr6_ssto_hap7	2680364	2680365	rs2442736	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	FGFR3P1	rs2442736-C	NR	1E-10		0.0237826	[0.017-0.031] unit decrease	Affymetrix [323858] (imputed)	N
605	chr6_ssto_hap7	2680364	2680365	rs2442736	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	FGFR3P1	rs2442736-C	NR	5E-9		0.0194468	[0.013-0.026] unit decrease	Affymetrix [319769] (imputed)	N
605	chr6_ssto_hap7	2680364	2680365	rs2442736	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	FGFR3P1	rs2442736-C	NR	8E-10		0.022647	[0.015-0.03] unit decrease	Affymetrix [127266] (imputed)	N
605	chr6_ssto_hap7	2680396	2680397	rs2442735	27668658	Iotchkova V	2016-11-01	Nat Genet	Discovery and refinement of genetic loci associated with cardiometabolic risk using dense imputation maps.	Cardiometabolic and hematological traits	up to 35,981 European ancestry individuals	up to 102,505 European ancestry individuals	6p21.33	HLA-B	rs2442735-G		2E-46	(WBC)	0.01	[0.008-0.012] unit decrease	Affymetrix, Illumina [17000000] (imputed)	N
605	chr6_ssto_hap7	2680565	2680566	rs9266629	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	6p21.33	NR	rs9266629-?	NR	4E-9				Affymetrix [~ 8270000] (imputed)	N
605	chr6_ssto_hap7	2680565	2680566	rs9266629	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	6p21.33	NR	rs9266629-?		5E-11	(SFTPD)	0.2699	[NR] unit increase	Illumina [NR]	N
605	chr6_ssto_hap7	2680565	2680566	rs9266629	23144326	Kim DK	2012-11-09	Am J Respir Crit Care Med	Genome-wide association analysis of blood biomarkers in chronic obstructive pulmonary disease.	Chronic obstructive pulmonary disease-related biomarkers	Up to 1,951 European ancestry smokers	NA	6p21.33	FGFR3P	rs9266629-C	0.21	4E-10	(SP-D)			Illumina [588352]	N
605	chr6_ssto_hap7	2680721	2680722	rs9266634	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	FGFR3P1	rs9266634-A	NR	2E-15		0.0224814	[0.017-0.028] unit decrease	Affymetrix [319769] (imputed)	N
605	chr6_ssto_hap7	2680721	2680722	rs9266634	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	FGFR3P1	rs9266634-A	NR	2E-8		0.0175518	[0.011-0.024] unit decrease	Affymetrix [323858] (imputed)	N
605	chr6_ssto_hap7	2680721	2680722	rs9266634	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	FGFR3P1	rs9266634-A	NR	3E-14		0.0215569	[0.016-0.027] unit decrease	Affymetrix [319769] (imputed)	N
605	chr6_ssto_hap7	2680721	2680722	rs9266634	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	FGFR3P1	rs9266634-A	NR	2E-14		0.0219479	[0.016-0.028] unit decrease	Affymetrix [321169] (imputed)	N
605	chr6_ssto_hap7	2680721	2680722	rs9266634	28762467	Wadelius M	2017-08-01	Clin Pharmacol Ther	Sulfasalazine-Induced Agranulocytosis Is Associated With the Human Leukocyte Antigen Locus.	Sulfasalazine-induced agranulocytosis	36 European ancestry cases, 5,170 European ancestry untreated controls	NA	6p21.33	intergenic	rs9266634-?	NR	3E-8		5.37	[2.97-9.69]	Illumina [9380034] (imputed)	N
605	chr6_ssto_hap7	2680721	2680722	rs9266634	28762467	Wadelius M	2017-08-01	Clin Pharmacol Ther	Sulfasalazine-Induced Agranulocytosis Is Associated With the Human Leukocyte Antigen Locus.	Sulfasalazine-induced agranulocytosis	36 European ancestry cases, 5,170 European ancestry untreated controls	NA	6p21.33	HLA-B	rs9266634-?	NR	3E-8		5.37	[2.97-9.69]	Illumina [9380034] (imputed)	N
605	chr6_ssto_hap7	2680812	2680813	rs9266639	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DDR1	5,364 Icelandic ancestry individuals	NA	6p21.33		rs9266639-T	0.2296	1E-7		0.113803	[0.072-0.156] unit increase	Illumina [7506463] (imputed)	N
605	chr6_ssto_hap7	2680947	2680948	rs2844543	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	ZDHHC20P2	rs2844543-T	NR	3E-12		0.0196225	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_ssto_hap7	2680947	2680948	rs2844543	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	ZDHHC20P2	rs2844543-T	NR	4E-11		0.0185963	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_ssto_hap7	2680947	2680948	rs2844543	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	ZDHHC20P2	rs2844543-T	NR	4E-11		0.0186102	[0.013-0.024] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_ssto_hap7	2680947	2680948	rs2844543	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	ZDHHC20P2	rs2844543-T	NR	2E-16		0.0252366	[0.019-0.031] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_ssto_hap7	2680969	2680970	rs79815527	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28+ CD45RA+ CD8dim T cell %T cell	3,440 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs79815527-A	0.12032	3E-9		0.2753	[0.18-0.37] unit increase	Illumina [18357815] (imputed)	N
605	chr6_ssto_hap7	2681017	2681018	rs2844542	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	71,221 East Asian ancestry individuals	NA	6p21.33		rs2844542-G	0.354053	4E-8		0.024232	[0.016-0.033] unit increase	Illumina [13466143] (imputed)	N
605	chr6_ssto_hap7	2681219	2681220	rs2244020	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	ZDHHC20P2	rs2244020-G	NR	4E-13		0.0234399	[0.017-0.03] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_ssto_hap7	2681219	2681220	rs2244020	25102180	Ng MC	2014-08-07	PLoS Genet	Meta-analysis of genome-wide association studies in African Americans provides insights into the genetic architecture of type 2 diabetes.	Type 2 diabetes	8,284 African American cases, 15,543 African American controls	6,061 African American cases, 5,483 African American controls, 8,130 European ancestry cases, 38,987 European ancestry controls	6p21.33	HLA-B	rs2244020-G	0.69	7E-9		1.09	[1.06-1.13]	Affymetrix, Illumina [2579389] (imputed)	N
605	chr6_ssto_hap7	2681219	2681220	rs2244020	25102180	Ng MC	2014-08-07	PLoS Genet	Meta-analysis of genome-wide association studies in African Americans provides insights into the genetic architecture of type 2 diabetes.	Type 2 diabetes	8,284 African American cases, 15,543 African American controls	6,061 African American cases, 5,483 African American controls, 8,130 European ancestry cases, 38,987 European ancestry controls	6p21.33	HLA-B	rs2244020-G	0.69	1E-6	(AA)	1.11	[1.07-1.16]	Affymetrix, Illumina [2579389] (imputed)	N
605	chr6_ssto_hap7	2681566	2681567	rs4713460	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.33		rs4713460-G	0.739	7E-16				Affymetrix [10369434] (imputed)	N
605	chr6_ssto_hap7	2681566	2681567	rs4713460	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	ZDHHC20P2	rs4713460-A	NR	2E-8		0.019914	[0.013-0.027] unit increase	Affymetrix [323858] (imputed)	N
605	chr6_ssto_hap7	2681584	2681585	rs4713462	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	ZDHHC20P2	rs4713462-A	NR	3E-9		0.0207985	[0.014-0.028] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_ssto_hap7	2681584	2681585	rs4713462	32534018	Liu X	2020-06-10	Brain Behav Immun	Genetic factors underlying the bidirectional relationship between autoimmune and mental disorders - findings from a Danish population-based study.	Autoimmune traits	1,383 Danish ancestry cases, 62,656 Danish ancestry controls	NA	6p21.33	NR	rs4713462-A	0.29	2E-13		1.37	[1.26-1.49]	NR [7721839] (imputed)	N
605	chr6_ssto_hap7	2681808	2681809	rs2596570	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Tyrosine levels	114,913 European ancestry individuals	NA	6p21.33		rs2596570-T	0.834751	5E-9		0.0325088	[0.022-0.043] unit decrease	NR [11722792] (imputed)	N
605	chr6_ssto_hap7	2682133	2682134	rs4143332	23603763	Liu JZ	2013-06-01	Nat Genet	Dense genotyping of immune-related disease regions identifies nine new risk loci for primary sclerosing cholangitis.	Primary sclerosing cholangitis	3,789 European ancestry cases, 25,079 European ancestry controls	NA	6p21.33	HLA-B	rs4143332-?	NR	1E-250				Illumina [140322] (imputed)	N
605	chr6_ssto_hap7	2682145	2682146	rs9266677	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	ZDHHC20P2	rs9266677-A	NR	2E-8		0.0194816	[0.013-0.026] unit increase	Affymetrix [323123] (imputed)	N
605	chr6_ssto_hap7	2682285	2682286	rs4143333	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	6p21.33	MICA	rs4143333-G	0.12	2E-16	(conditional on rs2284174)	1.15	[NR]	Affymetrix, Illumina [6224355] (imputed)	N
605	chr6_ssto_hap7	2682285	2682286	rs4143333	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	6p21.33	HLA-C, MICA	rs4143333-G	NR	1E-9		0.186384	[0.13-0.25] unit decrease	Illumina [at least 950000] (imputed)	N
605	chr6_ssto_hap7	2683602	2683603	rs9266721	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.33		rs9266721-C	0.408	8E-27				Affymetrix [10369434] (imputed)	N
605	chr6_ssto_hap7	2683627	2683628	rs9295987	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CREB3L4	5,364 Icelandic ancestry individuals	NA	6p21.33		rs9295987-G	0.04402	4E-158		1.13632	[1.05-1.22] unit increase	Illumina [7506463] (imputed)	N
605	chr6_ssto_hap7	2683627	2683628	rs9295987	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	FGFR3P1	rs9295987-G	0.061	3E-69	(Cyclic AMP-responsive element-binding protein 3-like protein 4, CREB3L4.11308.8.3)	0.87	[0.77-0.97] unit increase	Affymetrix [10572788] (imputed)	N
605	chr6_ssto_hap7	2684086	2684087	rs2844535	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-S	rs2844535-G	NR	1E-11		0.023805	[0.017-0.031] unit decrease	Affymetrix [323858] (imputed)	N
605	chr6_ssto_hap7	2684086	2684087	rs2844535	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HLA-S	rs2844535-G	NR	3E-11		0.0233241	[0.016-0.03] unit decrease	Affymetrix [127266] (imputed)	N
605	chr6_ssto_hap7	2684488	2684489	rs1521	31050781	Zhao SX	2019-05-03	JAMA Netw Open	Assessment of Molecular Subtypes in Thyrotoxic Periodic Paralysis and Graves Disease Among Chinese Han Adults: A Population-Based Genome-Wide Association Study.	Thyrotoxic hypokalemic periodic paralysis and Graves disease	171 Han Chinese ancestry cases, 2,160 Han Chinese ancestry controls	362 Han Chinese ancestry cases, 1,089 Han Chinese ancestry controls	6p21.33	MICA/HLA-B	rs1521-?	0.81	4E-18		2.51	[2.02-3.13]	Illumina [2752055] (imputed)	N
605	chr6_ssto_hap7	2684488	2684489	rs1521	21841780	Chu X	2011-08-14	Nat Genet	A genome-wide association study identifies two new risk loci for Graves' disease.	Graves' disease	1,468 Chinese ancestry cases, 1,490 Chinese ancestry controls	3,994 Chinese ancestry cases, 3,510 Chinese ancestry controls	6p21.33	HLA-B	rs1521-T	0.79	2E-65		1.92	[1.78-2.08]	Illumina [486049]	N
605	chr6_ssto_hap7	2684838	2684839	rs17193507	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	683 Turkish ancestry cases, 1,721 Turkish ancestry controls	NA	6p21.33	HLA-B, MICA	rs17193507-?	NR	2E-18	(conditional on rs2844678, rs9262437 and rs61444472)			Illumina [4495750] (imputed)	N
605	chr6_ssto_hap7	2684838	2684839	rs17193507	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	286 European ancestry cases, 2,652 European ancestry controls, 76 Han Chinese ancestry cases, 889 Han Chinese ancestry controls, 46 South Asian ancestry cases, 501 South Asian ancestry controls, 683 Turkish ancestry cases, 1,721 Turkish ancestry controls	NA	6p21.33	HLA-B, MICA	rs17193507-?	NR	7E-30	(conditional on rs2844678 and rs12524487)	3.28	NR	Illumina [up to 4495750] (imputed)	N
605	chr6_ssto_hap7	2684996	2684997	rs9266745	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p21.33	HLA-B, MICA	rs9266745-G	0.17	2E-8	(Turkish)	1.87	[1.50-2.34]	Illumina [up to 547389]	N
605	chr6_ssto_hap7	2685306	2685307	rs3020582	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-S	rs3020582-A	NR	3E-32		0.0377962	[0.032-0.044] unit increase	Affymetrix [323123] (imputed)	N
605	chr6_ssto_hap7	2685314	2685315	rs2905715	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-S	rs2905715-C	NR	1E-12		0.0208764	[0.015-0.027] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_ssto_hap7	2685314	2685315	rs2905715	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-S	rs2905715-C	NR	1E-10		0.0211485	[0.015-0.028] unit increase	Affymetrix [323858] (imputed)	N
605	chr6_ssto_hap7	2685314	2685315	rs2905715	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HLA-S	rs2905715-C	NR	1E-12		0.020881	[0.015-0.027] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_ssto_hap7	2685314	2685315	rs2905715	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HLA-S	rs2905715-C	NR	3E-10		0.0206892	[0.014-0.027] unit increase	Affymetrix [127266] (imputed)	N
605	chr6_ssto_hap7	2685314	2685315	rs2905715	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.33	HLA-S	rs2905715-C	NR	9E-10		0.0181976	[0.012-0.024] unit increase	Affymetrix [321114] (imputed)	N
605	chr6_ssto_hap7	2685314	2685315	rs2905715	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-S	rs2905715-C	NR	3E-8		0.0177635	[0.011-0.024] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_ssto_hap7	2685314	2685315	rs2905715	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HLA-S	rs2905715-C	NR	3E-13		0.0217768	[0.016-0.028] unit increase	Affymetrix [321169] (imputed)	N
605	chr6_ssto_hap7	2685333	2685334	rs3020581	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-S	rs3020581-G	NR	2E-14		0.0240767	[0.018-0.03] unit decrease	Affymetrix [323858] (imputed)	N
605	chr6_ssto_hap7	2685333	2685334	rs3020581	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HLA-S	rs3020581-G	NR	1E-12		0.0224897	[0.016-0.029] unit decrease	Affymetrix [127266] (imputed)	N
605	chr6_ssto_hap7	2685333	2685334	rs3020581	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HLA-S	rs3020581-G	NR	6E-18		0.0248167	[0.019-0.03] unit decrease	Affymetrix [321169] (imputed)	N
605	chr6_ssto_hap7	2685378	2685379	rs9266762	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-S	rs9266762-T	NR	2E-8		0.019515	[0.013-0.026] unit decrease	Affymetrix [319769] (imputed)	N
605	chr6_ssto_hap7	2685378	2685379	rs9266762	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-S	rs9266762-T	NR	4E-8		0.0191651	[0.012-0.026] unit increase	Affymetrix [321016] (imputed)	N
605	chr6_ssto_hap7	2685448	2685449	rs2507978	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	6p21.33	HLA-B, MICA	rs2507978-G	0.41	1E-10		1.035	[1.02-1.05]	Affymetrix, Illumina [8307659] (imputed)	N
605	chr6_ssto_hap7	2685459	2685460	rs9266766	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)(bidirectional)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.33		rs9266766-G	NR	2E-9				Affymetrix [7846216] (imputed)	N
605	chr6_ssto_hap7	2685824	2685825	rs2442749	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	6p21.33	HLA-S	rs2442749-C	0.292193	6E-13		0.018536638	[0.013-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
605	chr6_ssto_hap7	2685844	2685845	rs6920323	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.33	NR	rs6920323-T	NR	4E-6		0.022	unit decrease	Affymetrix [at least 7091467] (imputed)	N
605	chr6_ssto_hap7	2685844	2685845	rs6920323	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.33	NR	rs6920323-T	NR	2E-13		0.038	unit decrease	Affymetrix [at least 7091467] (imputed)	N
605	chr6_ssto_hap7	2685844	2685845	rs6920323	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.33	NR	rs6920323-T	0.812	3E-14	(EA)	0.044	unit decrease	Affymetrix [at least 7091467] (imputed)	N
605	chr6_ssto_hap7	2685844	2685845	rs6920323	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.33	NR	rs6920323-T	NR	2E-11		0.036	unit decrease	Affymetrix [at least 7091467] (imputed)	N
605	chr6_ssto_hap7	2685844	2685845	rs6920323	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.33	NR	rs6920323-T	0.812	4E-12	(EA)	0.042	unit decrease	Affymetrix [at least 7091467] (imputed)	N
605	chr6_ssto_hap7	2685897	2685898	rs9266772	23817569	Hinds DA	2013-06-30	Nat Genet	A genome-wide association meta-analysis of self-reported allergy identifies shared and allergy-specific susceptibility loci.	Self-reported allergy	53,862 European ancestry individuals	NA	6p21.33	MICA, HLA-C	rs9266772-C	0.1882	3E-12		0.104	[0.075-0.133] unit increase	Illumina [2400000] (imputed)	N
605	chr6_ssto_hap7	2686230	2686231	rs7775759	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HLA-S	rs7775759-A	NR	1E-11		0.0216624	[0.015-0.028] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_ssto_hap7	2686415	2686416	rs7741091	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	6p21.33	RNU6-603P	rs7741091-?	NR	3E-26		0.0306	[0.026-0.036] unit increase	Affymetrix [5701386] (imputed)	N
605	chr6_ssto_hap7	2686415	2686416	rs7741091	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.33	HLA-S	rs7741091-A	0.6803	3E-7		0.0391	[0.024-0.054] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
605	chr6_ssto_hap7	2686415	2686416	rs7741091	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p21.33	MICA	rs7741091-A	0.6701	8E-8	(EA)	0.0202	[0.013-0.028] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
605	chr6_ssto_hap7	2686415	2686416	rs7741091	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p21.33	MICA	rs7741091-A	0.6701	2E-8	(EA,men)	0.0306	[0.02-0.041] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
605	chr6_ssto_hap7	2686478	2686479	rs56671953	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	6p21.33	NR	rs56671953-?	NR	7E-9				Affymetrix [~ 8270000] (imputed)	N
605	chr6_ssto_hap7	2686955	2686956	rs2844531	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	315,284 European ancestry male individuals	NA	6p21.33	NR	rs2844531-A	0.8585	1E-30		0.0294	[0.024-0.034] unit increase	NR [~ 27400000] (imputed)	N
605	chr6_ssto_hap7	2687113	2687114	rs2596565	24532677	Bossini-Castillo L	2014-02-14	Ann Rheum Dis	A genome-wide association study of rheumatoid arthritis without antibodies against citrullinated peptides.	Rheumatoid arthritis (ACPA-negative)	1,148 European ancestry cases, 6,008 European ancestry controls	774 European ancestry cases, 1,079 European ancestry controls	6p21.33	MICA, HLA-B	rs2596565-?		9E-9		1.4	[NR]	Illumina [452367]	N
605	chr6_ssto_hap7	2687423	2687424	rs2523484	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-S	rs2523484-T	NR	9E-10		0.0200027	[0.014-0.026] unit increase	Affymetrix [323858] (imputed)	N
605	chr6_ssto_hap7	2687423	2687424	rs2523484	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HLA-S	rs2523484-T	NR	7E-9		0.01891	[0.013-0.025] unit increase	Affymetrix [127266] (imputed)	N
605	chr6_ssto_hap7	2687423	2687424	rs2523484	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HLA-S	rs2523484-T	NR	3E-15		0.0253333	[0.019-0.032] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_ssto_hap7	2687423	2687424	rs2523484	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HLA-S	rs2523484-T	NR	3E-8		0.0164823	[0.011-0.022] unit increase	Affymetrix [321169] (imputed)	N
605	chr6_ssto_hap7	2687576	2687577	rs2523483	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.33	NR	rs2523483-T	0.939	3E-11	(conditional)	4.665	[4.53-4.8]	Illumina [11270530] (imputed)	N
605	chr6_ssto_hap7	2687966	2687967	rs6932730	23817571	Bonnelykke K	2013-06-30	Nat Genet	Meta-analysis of genome-wide association studies identifies ten loci influencing allergic sensitization.	Allergic sensitization	5,789 European ancestry cases, 10,056 European ancestry controls	6,114 European ancestry cases, 9,920 European ancestry controls	6p21.33	MICA, HLA-C, HLA-B, MICB	rs6932730-T	0.82	4E-8		1.14	[1.09-1.20]	Affymetrix, Illumina [~ 2500000] (imputed)	N
605	chr6_ssto_hap7	2688022	2688023	rs12524487	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	286 European ancestry cases, 2,652 European ancestry controls, 76 Han Chinese ancestry cases, 889 Han Chinese ancestry controls, 46 South Asian ancestry cases, 501 South Asian ancestry controls, 683 Turkish ancestry cases, 1,721 Turkish ancestry controls	NA	6p21.33	HLA-B, MICA	rs12524487-?	NR	6E-38	(conditional on rs2844678)	3.12	NR	Illumina [up to 4495750] (imputed)	N
605	chr6_ssto_hap7	2688022	2688023	rs12524487	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	229 European ancestry cases, 1,088 European ancestry controls	NA	6p21.33	HLA-B, MICA	rs12524487-?	NR	7E-20				Illumina [4388215] (imputed)	N
605	chr6_ssto_hap7	2688022	2688023	rs12524487	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p21.33	HLA-B, MICA	rs12524487-T	0.07	3E-15	(EA)	3.78	[2.66-5.36]	Illumina [up to 547389]	N
605	chr6_ssto_hap7	2688022	2688023	rs12524487	23830517	Saruhan-Direskeneli G	2013-07-03	Am J Hum Genet	Identification of multiple genetic susceptibility loci in Takayasu arteritis.	Takayasu arteritis	305 Turkish ancestry cases, 106 European ancestry cases, 483 Turkish ancestry controls, 553 European ancestry controls	NA		HLA-B, MICA	rs12524487-T	0.04	6E-16		3.29		Illumina [at least 124312]	N
605	chr6_ssto_hap7	2688344	2688345	rs13437082	28031287	Sasayama D	2016-11-26	Hum Mol Genet	Genome-wide quantitative trait loci mapping of the human cerebrospinal fluid proteome.	Cerebrospinal fluid biomarker levels	133 Japanese ancestry individuals.	NA	6p21.33	NR	rs13437082-?	NR	1E-10	(MHC class I polypeptide-related sequence A)			Illumina [514227]	N
605	chr6_ssto_hap7	2688344	2688345	rs13437082	19343178	Soranzo N	2009-04-03	PLoS Genet	Meta-analysis of genome-wide scans for human adult stature identifies novel Loci and associations with measures of skeletal frame size.	Height	12,611 European ancestry individuals	7,187 European ancestry individuals	6p21.33	HLA-B	rs13437082-?	0.13	5E-8		0.07	[0.04-0.10] s.d. decrease	Illumina [229216]	N
605	chr6_ssto_hap7	2688903	2688904	rs13437088	23143594	Tsoi LC	2012-12-01	Nat Genet	Identification of 15 new psoriasis susceptibility loci highlights the role of innate immunity.	Psoriasis	10,588 European ancestry cases, 22,806 European ancestry controls	NA	6p21.33	HLA-B, HLA-C, MICA	rs13437088-T	0.25	3E-40	(conditioned on rs4406273)	1.32		Illumina [111236] (imputed)	N
605	chr6_ssto_hap7	2690314	2690315	rs72657657	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG181B23.7	rs72657657-A	NR	4E-13		0.0276575	[0.02-0.035] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_ssto_hap7	2691702	2691703	rs3128983	33002439	Jin G	2020-10-01	Lancet Oncol	Genetic risk, incident gastric cancer, and healthy lifestyle: a meta-analysis of genome-wide association studies and prospective cohort study.	Gastric cancer	10,254 Han Chinese ancestry cases, 10,914 Han Chinese ancestry controls	NA	6p21.33	NR	rs3128983-T	0.62	4E-6		0.9	NR	Affymetrix, Illumina [6957974] (imputed)	N
605	chr6_ssto_hap7	2692054	2692055	rs189117034	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	6p21.33		rs189117034-G	0.012714	4E-6		0.14073	[0.081-0.2] unit decrease	Affymetrix [15580782] (imputed)	N
605	chr6_ssto_hap7	2692729	2692730	rs9266791	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG181B23.7	rs9266791-C	NR	9E-16		0.0226999	[0.017-0.028] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_ssto_hap7	2692729	2692730	rs9266791	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG181B23.7	rs9266791-C	NR	5E-10		0.0195742	[0.013-0.026] unit increase	Affymetrix [323858] (imputed)	N
605	chr6_ssto_hap7	2692729	2692730	rs9266791	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG181B23.7	rs9266791-C	NR	5E-15		0.0220951	[0.017-0.028] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_ssto_hap7	2692729	2692730	rs9266791	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	XXbac-BPG181B23.7	rs9266791-C	NR	7E-9		0.0181935	[0.012-0.024] unit increase	Affymetrix [127266] (imputed)	N
605	chr6_ssto_hap7	2692729	2692730	rs9266791	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG181B23.7	rs9266791-C	NR	4E-9		0.0165754	[0.011-0.022] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_ssto_hap7	2692729	2692730	rs9266791	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG181B23.7	rs9266791-C	NR	5E-14		0.0232092	[0.017-0.029] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_ssto_hap7	2692729	2692730	rs9266791	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG181B23.7	rs9266791-C	NR	7E-15		0.0222285	[0.017-0.028] unit increase	Affymetrix [321169] (imputed)	N
605	chr6_ssto_hap7	2692741	2692742	rs9348866	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG181B23.7	rs9348866-T	NR	5E-10		0.0179264	[0.012-0.024] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_ssto_hap7	2692741	2692742	rs9348866	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG181B23.7	rs9348866-T	NR	3E-9		0.0188961	[0.013-0.025] unit increase	Affymetrix [323858] (imputed)	N
605	chr6_ssto_hap7	2692741	2692742	rs9348866	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG181B23.7	rs9348866-T	NR	4E-9		0.0169345	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_ssto_hap7	2692741	2692742	rs9348866	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	XXbac-BPG181B23.7	rs9348866-T	NR	3E-8		0.0176499	[0.011-0.024] unit increase	Affymetrix [127266] (imputed)	N
605	chr6_ssto_hap7	2692741	2692742	rs9348866	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG181B23.7	rs9348866-T	NR	8E-11		0.0186692	[0.013-0.024] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_ssto_hap7	2692741	2692742	rs9348866	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG181B23.7	rs9348866-T	NR	3E-16		0.0256147	[0.019-0.032] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_ssto_hap7	2692741	2692742	rs9348866	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG181B23.7	rs9348866-T	NR	4E-9		0.0170756	[0.011-0.023] unit increase	Affymetrix [321169] (imputed)	N
605	chr6_ssto_hap7	2692947	2692952	rs71699779	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	6p21.33	XXbac-BPG181B23.7	rs71699779-C	0.069883	9E-37		0.057562444	[0.049-0.066] unit increase	Affymetrix [93095623] (imputed)	N
605	chr6_ssto_hap7	2693883	2693884	rs2596517	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG181B23.7	rs2596517-G	NR	7E-14		0.0296528	[0.022-0.037] unit increase	Affymetrix [323123] (imputed)	N
605	chr6_ssto_hap7	2694043	2694044	rs7751505	23449627	Cousminer DL	2013-02-27	Hum Mol Genet	Genome-wide association and longitudinal analyses reveal genetic loci linking pubertal height growth, pubertal timing and childhood adiposity.	Pubertal anthropometrics	up to 5,043 European ancestry males, up to 5,756 European ancestry females	NA	6p21.33	MICA, VARS2	rs7751505-C	0.28	4E-6	(Pubertal growth)	0.07	[0.041-0.099] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
605	chr6_ssto_hap7	2694390	2694391	rs116562707	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Naive CD8+ T cell %T cell	3,427 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs116562707-G	0.0186	3E-9		0.3952	[0.27-0.53] unit increase	Illumina [18349913] (imputed)	N
605	chr6_ssto_hap7	2694390	2694391	rs116562707	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28+ CD45RA+ CD8+ T cell %T cell	3,440 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs116562707-G	0.01868	4E-9		0.4024	[0.27-0.54] unit increase	Illumina [18357815] (imputed)	N
605	chr6_ssto_hap7	2694432	2694433	rs28359827	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.33	NR	rs28359827-A	0.077	2E-71	(conditional)	2.916	[2.8-3.03]	Illumina [11270530] (imputed)	N
605	chr6_ssto_hap7	2695777	2695778	rs35026345	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	CAG-81 sp000435795 abundance in stool	5,959 Finnish ancestry individuals	NA	6p21.33		rs35026345-T	0.318743	2E-8		0.100796	[0.065-0.136] unit decrease	Illumina [7980478] (imputed)	N
605	chr6_ssto_hap7	2696055	2696056	rs28366119	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Keratinocyte cancer (MTAG)	at least 18,538 European ancestry cases, at least 340,302 European ancestry controls	NA	6p21.33	ERG	rs28366119-T	0.939044	4E-11		1.14	[1.10-1.19]	Affymetrix [7600000] (imputed)	N
605	chr6_ssto_hap7	2696100	2696101	rs16899524	23417110	Tin A	2013-02-16	Hum Genet	Genome-wide association study identified the human leukocyte antigen region as a novel locus for plasma beta-2 microglobulin.	Beta-2 microglubulin plasma levels	6,728 European ancestry individuals		6p21.33	HLA-B	rs16899524-C	0.93	1E-8		0.04	[0.026-0.054] unit increase	Affymetrix [2500000] (imputed)	N
605	chr6_ssto_hap7	2696672	2696673	rs183809241	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pneumonia	16,887 European ancestry cases, 463,412 European ancestry controls, 7,423 East Asian ancestry cases, 171,303 East Asian ancestry controls	NA	6p21.33		rs183809241-C	NR	9E-16		0.7693	[0.58-0.96] unit increase	Affymetrix, Illumina [25843326] (imputed)	N
605	chr6_ssto_hap7	2696731	2696732	rs142973694	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	IgA levels	16,883 Icelandic ancestry individuals	2,151 Swedish ancestry individuals	6p21.33	MICA	rs142973694-A	0.0655	7E-10		0.13	NR SD units increase	Illumina [21568490] (imputed)	N
605	chr6_ssto_hap7	2696816	2696817	rs2523466	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.33		rs2523466-G	0.77	8E-68				Affymetrix [10369434] (imputed)	N
605	chr6_ssto_hap7	2697835	2697836	rs11757660	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG181B23.7	rs11757660-C	NR	9E-13		0.0223072	[0.016-0.028] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_ssto_hap7	2697876	2697877	rs28366133	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG181B23.7	rs28366133-T	NR	2E-10		0.0184393	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_ssto_hap7	2697876	2697877	rs28366133	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG181B23.7	rs28366133-T	NR	7E-10		0.0199985	[0.014-0.026] unit increase	Affymetrix [323858] (imputed)	N
605	chr6_ssto_hap7	2697876	2697877	rs28366133	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG181B23.7	rs28366133-T	NR	2E-9		0.0176126	[0.012-0.023] unit increase	Affymetrix [319769] (imputed)	N
605	chr6_ssto_hap7	2697876	2697877	rs28366133	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	XXbac-BPG181B23.7	rs28366133-T	NR	6E-9		0.0188541	[0.012-0.025] unit increase	Affymetrix [127266] (imputed)	N
605	chr6_ssto_hap7	2697876	2697877	rs28366133	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG181B23.7	rs28366133-T	NR	6E-18		0.0274101	[0.021-0.034] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_ssto_hap7	2697876	2697877	rs28366133	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG181B23.7	rs28366133-T	NR	5E-10		0.0183385	[0.013-0.024] unit increase	Affymetrix [321169] (imputed)	N
605	chr6_ssto_hap7	2697876	2697877	rs28366133	28468790	Agopian AJ	2017-06-01	Circ Cardiovasc Genet	Genome-Wide Association Studies and Meta-Analyses for Congenital Heart Defects.	Conotruncal heart defects (maternal effects)	up to 838 European ancestry trios	NA	6p21.33	intergenic	rs28366133-?	NR	4E-6		1.226459	[1.124163-1.338064]	Illumina [at least 4756722] (imputed)	N
605	chr6_ssto_hap7	2698507	2698508	rs2251396	25936594	Tomer Y	2015-04-27	J Autoimmun	Genome wide identification of new genes and pathways in patients with both autoimmune thyroiditis and type 1 diabetes.	Type 1 diabetes and autoimmune thyroid diseases	346 European ancestry cases, 727 European ancestry controls	185 European ancestry cases, 340 European ancestry controls	6p21.33	PSORS1C1, MICA, HCP5	rs2251396-T	NR	1E-22		2.2132		Illumina [514008]	N
605	chr6_ssto_hap7	2698648	2698649	rs72502580	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG181B23.7	rs72502580-T	NR	9E-9		0.036638	[0.024-0.049] unit increase	Affymetrix [323858] (imputed)	N
605	chr6_ssto_hap7	2698648	2698649	rs72502580	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	XXbac-BPG181B23.7	rs72502580-T	NR	8E-9		0.0367455	[0.024-0.049] unit increase	Affymetrix [127266] (imputed)	N
605	chr6_ssto_hap7	2699587	2699588	rs4349859	21743469	Evans DM	2011-07-10	Nat Genet	Interaction between ERAP1 and HLA-B27 in ankylosing spondylitis implicates peptide handling in the mechanism for HLA-B27 in disease susceptibility.	Ankylosing spondylitis	3,023 European ancestry cases, 8,779 European ancestry controls	2,111 European ancestry cases, 4,483 European ancestry controls	6p21.33	HLA-B	rs4349859-A	0.04	1E-200	(less than)			Illumina [2223620] (imputed)	N
605	chr6_ssto_hap7	2700395	2700396	rs2596542	21499248	Kumar V	2011-04-17	Nat Genet	Genome-wide association study identifies a susceptibility locus for HCV-induced hepatocellular carcinoma.	Hepatocellular carcinoma	721 Japanese ancestry cases, 2,890 Japanese ancestry controls	673 Japanese ancestry cases, 2,596 Japanese ancestry controls	6p21.33	MICA	rs2596542-A	0.33	4E-13		1.39	[1.27-1.52]	Illumina [432703]	N
605	chr6_ssto_hap7	2700852	2700853	rs146482045	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.33		rs146482045-T	0.934	1E-13				Affymetrix [10369434] (imputed)	N
605	chr6_ssto_hap7	2702248	2702249	rs6911024	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	6p21.33	MICA, HLA-C	rs6911024-T	0.90242	2E-13		0.038308	[0.028-0.049] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
605	chr6_ssto_hap7	2702305	2702306	rs112142209	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DNAJB11	5,359 Icelandic ancestry individuals	NA	6p21.33		rs112142209-G	0.01759	6E-13		0.501147	[0.36-0.64] unit increase	Illumina [7506463] (imputed)	N
605	chr6_ssto_hap7	2703458	2703459	rs13220896	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	6p21.33	MICA	rs13220896-G	0.95996	2E-12		0.0328311	[0.024-0.042] unit increase	NR [13737936] (imputed)	N
605	chr6_ssto_hap7	2703458	2703459	rs13220896	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p21.33		rs13220896-?	NR	4E-15		0.0407174	[0.03-0.051] unit increase	Affymetrix [20259828] (imputed)	N
605	chr6_ssto_hap7	2704518	2704519	rs17200067	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MICA	5,360 Icelandic ancestry individuals	NA	6p21.33		rs17200067-T	0.03112	2E-87		1.02615	[0.92-1.13] unit increase	Illumina [7506463] (imputed)	N
605	chr6_ssto_hap7	2704518	2704519	rs17200067	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	MICA, HCP5, Y_RNA	rs17200067-T	0.0311245	6E-15	(EA, MHC class I polypeptide-related sequence A)	0.9664	[0.73-1.21] unit increase	Affymetrix [509946]	N
605	chr6_ssto_hap7	2704780	2704781	rs116135464	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Uveitis	2,616 European ancestry cases, 478,126 European ancestry controls, 125 East Asian ancestry cases, 174,600 East Asian ancestry controls	NA	6p21.33		rs116135464-T	NR	8E-191		1.8397	[1.72-1.96] unit increase	Affymetrix, Illumina [25844095] (imputed)	N
605	chr6_ssto_hap7	2704867	2704868	rs59440261	26553974	McLaren PJ	2015-11-09	Proc Natl Acad Sci U S A	Polymorphisms of large effect explain the majority of the host genetic contribution to variation of HIV-1 virus load.	Setpoint viral load in HIV-1 infection	6,315 European ancestry cases	NA	6p21.33	HLA-B	rs59440261-?	NR	2E-83				Affymetrix, Illumina [~ 8000000] (imputed)	N
605	chr6_ssto_hap7	2705226	2705227	rs2844519	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	6p21.33	MICA	rs2844519-C	0.792829	7E-10		0.017882064	[0.012-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
605	chr6_ssto_hap7	2705383	2705384	rs2301747	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCP5, MICA	rs2301747-G	NR	2E-12		0.0308634	[0.022-0.039] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_ssto_hap7	2706365	2706366	rs2844518	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MICA	5,360 Icelandic ancestry individuals	NA	6p21.33		rs2844518-T	0.3275	2E-28		0.215281	[0.18-0.25] unit increase	Illumina [7506463] (imputed)	N
605	chr6_ssto_hap7	2706514	2706515	rs2507968	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Gynecologic disease (multivariate analysis)	up to 7,975 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs2507968-?		3E-9	(uterine fibroid, uterine cervical cancer)			Illumina [7645193] (imputed)	N
605	chr6_ssto_hap7	2707781	2707782	rs116795853	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	MICA	rs116795853-A	0.026	1E-18	(DnaJ homolog subfamily B member 11, DNAJB11.7110.2.3)	0.66	[0.5-0.82] unit increase	Affymetrix [10572788] (imputed)	N
605	chr6_ssto_hap7	2708058	2708059	rs2857281	26190474	Dai Y	2015-07-20	Sci Rep	Performance of genetic risk factors in prediction of trichloroethylene induced hypersensitivity syndrome.	Trichloroethylene-induced hypersensitivity syndrome	98 Han Chinese ancestry cases, 98 Han Chinese ancestry trichloroethylene-tolerant controls	Up to 74 Han Chinese ancestry cases, up to 1,661 Han Chinese ancestry trichloroethylene-tolerant controls	6p21.33	MICA	rs2857281-C	0.081	1E-37		11.92	[8.16-17.42]	Illumina [1392644]	N
605	chr6_ssto_hap7	2708375	2708376	rs12174396	32771030	Tangtanatakul P	2020-08-08	Arthritis Res Ther	Meta-analysis of genome-wide association study identifies FBN2 as a novel locus associated with systemic lupus erythematosus in Thai population.	Systemic lupus erythematosus	487 Thai cases, 1,606 Thai controls	405 Thai cases, 1,590 Thai controls	6p21.33	HCP5	rs12174396-G	0.18	2E-7		0.6904	[NR]	Illumina [421909] (imputed)	N
605	chr6_ssto_hap7	2710341	2710342	rs2263314	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCP5, MICA	rs2263314-T	NR	9E-9		0.0249923	[0.016-0.034] unit increase	Affymetrix [323858] (imputed)	N
605	chr6_ssto_hap7	2710341	2710342	rs2263314	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HCP5, MICA	rs2263314-T	NR	6E-9		0.0252674	[0.017-0.034] unit increase	Affymetrix [127266] (imputed)	N
605	chr6_ssto_hap7	2711384	2711385	rs12175489	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue adjusted for BMI	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	6p21.33	HCP5, HLA-B	rs12175489-A	0.15	2E-6	(men)			Affymetrix, Illumina [2500000] (imputed)	N
605	chr6_ssto_hap7	2711437	2711438	rs114291795	27157822	Hallberg P	2016-05-03	Lancet Diabetes Endocrinol	Genetic variants associated with antithyroid drug-induced agranulocytosis: a genome-wide association study in a European population.	Non-chemotherapy drug induced agranulocytosis	222 European ancestry cases, 12 cases, 5,170 European ancestry controls	NA	6p21.33	MICA, HCP5	rs114291795-?	NR	2E-15		3.57	[2?61-4?90]	Illumina [9380034] (imputed)	N
605	chr6_ssto_hap7	2711516	2711517	rs2523496	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cervical cancer	909 European ancestry cases, 238,249 European ancestry controls, 967 East Asian ancestry cases, 60,614 East Asian ancestry controls	NA	6p21.33		rs2523496-C	NR	2E-13		0.2559	[0.19-0.32] unit decrease	Affymetrix, Illumina [25777760] (imputed)	N
605	chr6_ssto_hap7	2711516	2711517	rs2523496	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cervical cancer	6,563 European ancestry cases, 410,350 European ancestry controls	NA	6p21.33		rs2523496-T	NR	4E-25		1.2076	NR	Affymetrix [7846216] (imputed)	N
605	chr6_ssto_hap7	2711546	2711550	rs66509943	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	6p21.33	MICA	rs66509943-?	NR	2E-17		0.0473851	[0.036-0.058] unit decrease	Illumina [13520550] (imputed)	N
605	chr6_ssto_hap7	2711550	2711554	rs201838897	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (salicylic acid and derivatives)	61,583 European ancestry cases, 50,427 European ancestry controls, 41,461 East Asian ancestry cases, 137,265 East Asian ancestry controls	NA	6p21.33		rs201838897-C	NR	9E-17		0.0893	[0.068-0.11] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
605	chr6_ssto_hap7	2711550	2711554	rs201838897	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls, 49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	6p21.33		rs201838897-C	NR	4E-14		0.0785	[0.058-0.099] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
605	chr6_ssto_hap7	2711590	2711591	rs6938453	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCP5, MICA	rs6938453-A	NR	2E-14		0.0262104	[0.019-0.033] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_ssto_hap7	2711590	2711591	rs6938453	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCP5, MICA	rs6938453-A	NR	3E-14		0.028343	[0.021-0.036] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_ssto_hap7	2711590	2711591	rs6938453	33794208	Bowden SJ	2021-04-01	Lancet Oncol	Genetic variation in cervical preinvasive and invasive disease: a genome-wide association study.	Cervical intraepithelial neoplasia grade 3 and invasive cervical cancer	764 European ancestry invasive cervical cancer cases, 4,005 European ancestry cervical intraepithelial neoplasia grade 3 cases, 145,545 European ancestry controls	NA	6p21.33	MICA	rs6938453-?	NR	2E-17		0.79	[0.75-0.83]	Affymetrix [9600464] (imputed)	N
605	chr6_ssto_hap7	2711590	2711591	rs6938453	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	6p21.33	NR	rs6938453-?	NR	6E-29	(MIC-A)	0.979642	[0.81-1.15] unit decrease	Illumina [11901634] (imputed)	N
605	chr6_ssto_hap7	2711706	2711707	rs748543364	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-3 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	6p21.33		rs748543364-AG	0.654332	5E-8		0.0236619	[0.015-0.032] unit decrease	NR [11722792] (imputed)	N
605	chr6_ssto_hap7	2711706	2711707	rs748543364	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Docosahexaenoic acid levels	115,006 European ancestry individuals	NA	6p21.33		rs748543364-AG	0.654332	7E-10		0.0264866	[0.018-0.035] unit decrease	NR [11722792] (imputed)	N
605	chr6_ssto_hap7	2711771	2711772	rs28559870	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.33		rs28559870-C	0.824	3E-54				Affymetrix [10369434] (imputed)	N
605	chr6_ssto_hap7	2711771	2711772	rs28559870	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.33	NR	rs28559870-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
605	chr6_ssto_hap7	2711772	2711773	rs28436034	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCP5, MICA	rs28436034-G	NR	8E-9		0.022753	[0.015-0.03] unit increase	Affymetrix [323858] (imputed)	N
605	chr6_ssto_hap7	2711772	2711773	rs28436034	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HCP5, MICA	rs28436034-G	NR	4E-8		0.0216205	[0.014-0.029] unit increase	Affymetrix [127266] (imputed)	N
605	chr6_ssto_hap7	2711772	2711773	rs28436034	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCP5, MICA	rs28436034-G	NR	4E-11		0.02346	[0.016-0.03] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_ssto_hap7	2711772	2711773	rs28436034	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCP5, MICA	rs28436034-G	NR	2E-13		0.0283594	[0.021-0.036] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_ssto_hap7	2712132	2712133	rs9380254	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	6p21.33	MICA	rs9380254-C	0.061689	4E-16		0.03985305	[0.03-0.049] unit decrease	Affymetrix [93095623] (imputed)	N
605	chr6_ssto_hap7	2712565	2712566	rs2853981	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.33	MICA	rs2853981-G	NR	5E-8	(women)	0.0250092	[0.016-0.034] unit decrease	Illumina [13520550] (imputed)	N
605	chr6_ssto_hap7	2712840	2712841	rs41560824	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LRPAP1	5,361 Icelandic ancestry individuals	NA	6p21.33		rs41560824-G	0.0175	3E-261		2.24371	[2.12-2.37] unit increase	Illumina [7506463] (imputed)	N
605	chr6_ssto_hap7	2712912	2712913	rs1131896	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	6p21.33	MICA	rs1131896-A	0.231391	1E-19		0.028329957	[0.022-0.034] unit increase	Affymetrix [93095623] (imputed)	N
605	chr6_ssto_hap7	2712912	2712913	rs1131896	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	6p21.33	MICA	rs1131896-A	0.2312	1E-29		0.04771386	[0.039-0.056] unit decrease	Affymetrix [~ 2500000] (imputed)	N
605	chr6_ssto_hap7	2712912	2712913	rs1131896	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	6p21.33	MICA	rs1131896-A	0.2312	2E-28		0.04672725	[0.038-0.055] unit increase	Affymetrix [~ 2500000] (imputed)	N
605	chr6_ssto_hap7	2713101	2713102	rs2853977	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.33	MICA	rs2853977-T	NR	1E-10		0.0208107	[0.015-0.027] unit decrease	Illumina [13520550] (imputed)	N
605	chr6_ssto_hap7	2713188	2713189	rs3828879	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCP5, MICA	rs3828879-T	NR	3E-10		0.0269729	[0.019-0.035] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_ssto_hap7	2713831	2713832	rs112243036	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCP5, MICA	rs112243036-A	NR	1E-9		0.0293452	[0.02-0.039] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_ssto_hap7	2714219	2714220	rs2256174	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	6p21.33	MICA, HCP5	rs2256174-A	0.4616	2E-7		0.0375	[0.023-0.052] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
605	chr6_ssto_hap7	2714246	2714247	rs2256175	28041642	Carmona FD	2016-12-29	Am J Hum Genet	A Genome-wide Association Study Identifies Risk Alleles in Plasminogen and P4HA2 Associated with Giant Cell Arteritis.	Giant cell arteritis	2,134 European ancestry cases, 9,125 European ancestry controls	NA	6p21.33	HLA-B	rs2256175-?	NR	8E-6		1.18		Illumina [1844133] (imputed)	N
605	chr6_ssto_hap7	2714246	2714247	rs2256175	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	6p21.33	NR	rs2256175-?		8E-35	(MICA)			Illumina [NR]	N
605	chr6_ssto_hap7	2714326	2714327	rs2256183	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCP5, MICA	rs2256183-G	NR	1E-10		0.018139	[0.013-0.024] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_ssto_hap7	2714326	2714327	rs2256183	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of white cells	171,996 European ancestry individuals	NA	6p21.33	HCP5, MICA	rs2256183-G	0.4973	1E-9		0.0210357	[0.014-0.028] unit increase	Affymetrix [~ 2500000] (imputed)	N
605	chr6_ssto_hap7	2714326	2714327	rs2256183	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	6p21.33	MICA	rs2256183-A	0.45	8E-29		0.04	[NR] unit increase	Affymetrix, Illumina [2834208] (imputed)	N
605	chr6_ssto_hap7	2715148	2715149	rs2853968	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic hepatitis C infection	273 European ancestry cases, 351,740 European ancestry controls, 7,110 East Asian ancestry cases, 169,588 East Asian ancestry controls	NA	6p21.33		rs2853968-G	NR	2E-10		0.1124	[0.078-0.147] unit increase	Affymetrix, Illumina [20457788] (imputed)	N
605	chr6_ssto_hap7	2716514	2716515	rs2853975	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein B2M	5,353 Icelandic ancestry individuals	NA	6p21.33		rs2853975-T	0.2249	9E-19		0.18093	[0.14-0.22] unit increase	Illumina [7506463] (imputed)	N
605	chr6_ssto_hap7	2716514	2716515	rs2853975	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCP5, MICA	rs2853975-T	NR	3E-9		0.0197511	[0.013-0.026] unit increase	Affymetrix [323123] (imputed)	N
605	chr6_ssto_hap7	2716679	2716680	rs9266825	35215271	Almandil NB	2022-01-27	Pharmaceuticals (Basel)	Integration of Transcriptome and Exome Genotyping Identifies Significant Variants with Autism Spectrum Disorder.	Autism spectrum disorder	70 Arab ancestry cases, 132 Arab ancestry controls	NA	6p21.33	NA	rs9266825-A	0.4659	6E-6		0.3147	[0.1885-0.5253]	Illumina [243345]	N
605	chr6_ssto_hap7	2716708	2716709	rs1882	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	6p21.33	MICA	rs1882-G	0.4676	1E-19		0.03244427	[0.025-0.039] unit decrease	Affymetrix [~ 2500000] (imputed)	N
605	chr6_ssto_hap7	2716708	2716709	rs1882	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	6p21.33	MICA	rs1882-G	0.4671	5E-19		0.0315247	[0.025-0.038] unit increase	Affymetrix [~ 2500000] (imputed)	N
605	chr6_ssto_hap7	2716927	2716928	rs9266834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	6p21.33		rs9266834-T	0.889775	2E-11		0.0441975	[0.031-0.057] unit decrease	NR [11722792] (imputed)	N
605	chr6_ssto_hap7	2716927	2716928	rs9266834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	6p21.33		rs9266834-T	0.889775	5E-14		0.0490222	[0.036-0.062] unit decrease	NR [11722792] (imputed)	N
605	chr6_ssto_hap7	2716927	2716928	rs9266834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6p21.33		rs9266834-T	0.889775	2E-11		0.0437642	[0.031-0.057] unit decrease	NR [11722792] (imputed)	N
605	chr6_ssto_hap7	2716927	2716928	rs9266834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	6p21.33		rs9266834-T	0.889775	2E-11		0.0427432	[0.03-0.055] unit decrease	NR [11722792] (imputed)	N
605	chr6_ssto_hap7	2716927	2716928	rs9266834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in IDL	115,082 European ancestry individuals	NA	6p21.33		rs9266834-T	0.889775	9E-15		0.0506081	[0.038-0.063] unit increase	NR [11722792] (imputed)	N
605	chr6_ssto_hap7	2716927	2716928	rs9266834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	6p21.33		rs9266834-T	0.889775	3E-9		0.0392601	[0.026-0.052] unit increase	NR [11722792] (imputed)	N
605	chr6_ssto_hap7	2716927	2716928	rs9266834	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCP5	rs9266834-A	NR	8E-9		0.0263611	[0.017-0.035] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_ssto_hap7	2716927	2716928	rs9266834	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCP5	rs9266834-A	NR	1E-9		0.0303575	[0.021-0.04] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_ssto_hap7	2719282	2719283	rs2596528	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCP5	rs2596528-C	NR	1E-19		0.0277879	[0.022-0.034] unit decrease	Affymetrix [323123] (imputed)	N
605	chr6_ssto_hap7	2721672	2721673	rs113203074	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.33		rs113203074-C	0.959	8E-27				Affymetrix [10369434] (imputed)	N
605	chr6_ssto_hap7	2721672	2721673	rs113203074	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCP5	rs113203074-A	NR	2E-9		0.0426261	[0.029-0.057] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_ssto_hap7	2722246	2722247	rs73402222	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8+ and CD8dim T cell %leukocyte	3,668 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs73402222-C	0.34582	5E-9		0.1904	[0.13-0.25] unit decrease	Illumina [18430788] (imputed)	N
605	chr6_ssto_hap7	2722246	2722247	rs73402222	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8+ T cell %T cell	3,668 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs73402222-C	0.34582	3E-9		0.1934	[0.13-0.26] unit decrease	Illumina [18430788] (imputed)	N
605	chr6_ssto_hap7	2722246	2722247	rs73402222	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4+/CD8+ T cell	3,652 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs73402222-C	0.34555	2E-8		0.1905	[0.12-0.26] unit increase	Illumina [18427348] (imputed)	N
605	chr6_ssto_hap7	2723565	2723566	rs17206736	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	MICA, HCP5	rs17206736-G	0.07673019	1E-26	(EA, MHC class I polypeptide-related sequence A)	0.8764	[0.72-1.03] unit decrease	Affymetrix [509946]	N
605	chr6_ssto_hap7	2723581	2723582	rs2844511	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	MICA, HCP5	rs2844511-A	0.3969849	4E-119	(MHC class I polypeptide-related sequence A)	0.9218	[0.85-0.99] unit increase	Affymetrix [509946]	N
605	chr6_ssto_hap7	2724159	2724159	rs113265260	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs113265260-TAC	0.035	1E-51	(MHC class I polypeptide-related sequence B, MICB.5102.55.3)	1.07	[0.93-1.21] unit increase	Affymetrix [10572788] (imputed)	N
605	chr6_ssto_hap7	2724207	2724208	rs2516448	23482656	Chen D	2013-03-12	J Natl Cancer Inst	Genome-wide association study of susceptibility loci for cervical cancer.	Cervical cancer	1,034 European ancestry cases, 3,948 European ancestry controls	1,140 European ancestry cases, 1,058 European ancestry controls	6p21.33	MICA	rs2516448-?	NR	4E-18		1.42	[1.31-1.54]	Illumina [632668]	N
605	chr6_ssto_hap7	2725198	2725199	rs4418214	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	6p21.33	HCP5	rs4418214-C	0.084923	7E-17		0.03656655	[0.028-0.045] unit decrease	Affymetrix [93095623] (imputed)	N
605	chr6_ssto_hap7	2725198	2725199	rs4418214	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Number of common colds	43,826 European ancestry cases, 15,720 European ancestry controls	NA	6p21.33	NR	rs4418214-?	NR	1E-6		0.0345	[0.021-0.048] unit decrease	Illumina [at least 560000] (imputed)	N
605	chr6_ssto_hap7	2725198	2725199	rs4418214	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	MICA, HCP5	rs4418214-C	0.06230848	2E-15	(EA, MHC class I polypeptide-related sequence A)	0.7104	[0.54-0.88] unit decrease	Affymetrix [509946]	N
605	chr6_ssto_hap7	2725198	2725199	rs4418214	23935489	McLaren PJ	2013-07-25	PLoS Pathog	Association study of common genetic variants and HIV-1 acquisition in 6,300 infected cases and 7,200 controls.	HIV-1 susceptibility	6,334 European ancestry cases, 7,247 European ancestry controls	NA	6p21.33	HLA-C, HLA-B	rs4418214-C	NR	4E-11		1.52		Affymetrix, Illumina [~ 8000000] (imputed)	N
605	chr6_ssto_hap7	2725198	2725199	rs4418214	21051598	Pereyra F	2010-11-04	Science	The major genetic determinants of HIV-1 control affect HLA class I peptide presentation.	HIV-1 control	516 European cases, 1,196 European controls, 341 African American cases, 892 African American controls, 117 Hispanic cases, 560 Hispanic controls	NA	6p21.33	MICA	rs4418214-C	0.075	1E-34	(EA)	4.4	[NR]	Illumina [1384048] (imputed)	N
605	chr6_ssto_hap7	2727189	2727190	rs73402240	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.33		rs73402240-C	0.962	4E-8				Affymetrix [10369434] (imputed)	N
605	chr6_ssto_hap7	2727189	2727190	rs73402240	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs73402240-C	0.962	2E-11				Affymetrix [10369434] (imputed)	N
605	chr6_ssto_hap7	2727189	2727190	rs73402240	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCP5	rs73402240-T	NR	3E-13		0.0548397	[0.04-0.07] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_ssto_hap7	2728810	2728811	rs116534628	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.33		rs116534628-C	0.916	1E-14				Affymetrix [10369434] (imputed)	N
605	chr6_ssto_hap7	2729010	2729011	rs181785842	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCP5	rs181785842-C	NR	2E-9		0.0590849	[0.04-0.078] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_ssto_hap7	2731127	2731128	rs9267057	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.33	intergenic	rs9267057-?		5E-9		1.1627907	[1.1-1.22]	Affymetrix, Illumina [NR]	N
605	chr6_ssto_hap7	2734033	2734034	rs2516471	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	6p21.33	HCP5	rs2516471-A	0.062429	8E-72		0.09513792	[0.085-0.106] unit decrease	Affymetrix [93095623] (imputed)	N
605	chr6_ssto_hap7	2735207	2735208	rs2263323	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MICA	5,360 Icelandic ancestry individuals	NA	6p21.33		rs2263323-T	0.1049	7E-192		0.829215	[0.77-0.88] unit decrease	Illumina [7506463] (imputed)	N
605	chr6_ssto_hap7	2736124	2736126	rs199530775	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs199530775-C	0.038	2E-14	(MHC class I polypeptide-related sequence B, MICB.5102.55.3)	0.49	[0.37-0.61] unit increase	Affymetrix [10572788] (imputed)	N
605	chr6_ssto_hap7	2736124	2736125	rs55957433	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCP5	rs55957433-G	NR	3E-8		0.0196371	[0.013-0.027] unit decrease	Affymetrix [321016] (imputed)	N
605	chr6_ssto_hap7	2737364	2737365	rs7759215	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.33	NR	rs7759215-G	0.013	9E-13		0.564225	[0.41-0.72] unit increase	Affymetrix [up to 8900000] (imputed)	N
605	chr6_ssto_hap7	2737364	2737365	rs7759215	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.33	NR	rs7759215-G	0.013	5E-6	(women)	0.575344	[0.33-0.82] unit increase	Affymetrix [up to 8900000] (imputed)	N
605	chr6_ssto_hap7	2739356	2739357	rs2596466	23417110	Tin A	2013-02-16	Hum Genet	Genome-wide association study identified the human leukocyte antigen region as a novel locus for plasma beta-2 microglobulin.	Beta-2 microglubulin plasma levels	6,728 European ancestry individuals		6p21.33	MICA	rs2596466-C	0.07	2E-12		0.05	[0.034-0.066] unit decrease	Affymetrix [2500000] (imputed)	N
605	chr6_ssto_hap7	2739359	2739360	rs3128981	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCP5	rs3128981-G	NR	3E-8		0.0188491	[0.012-0.026] unit decrease	Affymetrix [323858] (imputed)	N
605	chr6_ssto_hap7	2739359	2739360	rs3128981	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	6p21.33	HCP5	rs3128981-G	0.294246	9E-26		0.025565179	[0.021-0.03] unit increase	Affymetrix [93095623] (imputed)	N
605	chr6_ssto_hap7	2740046	2740047	rs190497944	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Iritis	110 East Asian ancestry cases, 175,543 East Asian ancestry controls	NA	6p21.33		rs190497944-C	0.001120244	5E-9		27.140694	[18.06-36.22] unit increase	Illumina [13429677] (imputed)	N
605	chr6_ssto_hap7	2741070	2741071	rs2516470	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	6p21.33	HCP5	rs2516470-C	0.663227	4E-13		0.017850922	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
605	chr6_ssto_hap7	2741070	2741071	rs2516470	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	6p21.33	NR	rs2516470-?	NR	9E-10	(MIC-A)	0.992294	[0.67-1.31] unit decrease	Illumina [11901634] (imputed)	N
605	chr6_ssto_hap7	2741070	2741071	rs2516470	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	HCP5, LINC01149	rs2516470-G	0.3482412	5E-23	(EA, MHC class I polypeptide-related sequence A)	0.4412	[0.36-0.53] unit increase	Affymetrix [509946]	N
605	chr6_ssto_hap7	2741318	2741319	rs2524277	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TFF3	5,365 Icelandic ancestry individuals	NA	6p21.33		rs2524277-A	0.0351	2E-13		0.363897	[0.27-0.46] unit increase	Illumina [7506463] (imputed)	N
605	chr6_ssto_hap7	2741318	2741319	rs2524277	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TFF3	5,364 Icelandic ancestry individuals	NA	6p21.33		rs2524277-A	0.0351	2E-15		0.383348	[0.29-0.48] unit increase	Illumina [7506463] (imputed)	N
605	chr6_ssto_hap7	2741318	2741319	rs2524277	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	HCP5	rs2524277-A	0.062	2E-19	(Trefoil factor 3, TFF3.4721.54.2)	0.46	[0.36-0.56] unit increase	Affymetrix [10572788] (imputed)	N
605	chr6_ssto_hap7	2741318	2741319	rs2524277	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	NFKBIL1	rs2524277-A	0.03869347	1E-12	(EA, Trefoil factor 3)	0.7819	[0.57-0.99] unit increase	Affymetrix [509946]	N
605	chr6_ssto_hap7	2741497	2741498	rs2844520	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6p21.33		rs2844520-?	NR	1E-10		0.870197	[0.83-0.91]	NR [685523]	N
605	chr6_ssto_hap7	2741567	2741568	rs9469003	21801394	Genin E	2011-07-29	Orphanet J Rare Dis	Genome-wide association study of Stevens-Johnson Syndrome and Toxic Epidermal Necrolysis in Europe.	Drug-induced Stevens-Johnson syndrome or toxic epidermal necrolysis (SJS/TEN)	424 European ancestry cases, 1,881 European ancestry controls	NA	6p21.33	HCP5	rs9469003-C	0.15	2E-9		1.73	[1.44-2.08]	Illumina [268914]	N
605	chr6_ssto_hap7	2742004	2742005	rs2524276	22864933	O'Donnell PH	2012-01-03	Cancer	Identification of novel germline polymorphisms governing capecitabine sensitivity.	Capecitabine sensitivity	Up to 84 East Asian ancestry lymphoblastoid cell lines, up to 164 European ancestry lymphoblastoid cell lines, up to 173 African ancestry lymphoblastoid cell lines, up to 82 African American lymphoblastoid cell lines	NA	6p21.33	intergenic	rs2524276-?	NR	6E-6				NR [~ 2000000]	N
605	chr6_ssto_hap7	2743022	2743023	rs61447909	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Squamous cell carcinoma	9,674 European ancestry cases, 625,657 European ancestry controls	NA	6p21.33	LINC01149	rs61447909-A	NR	2E-6		1.1111112	[1.06-1.16]	Affymetrix, Illumina [up to 9061544] (imputed)	N
605	chr6_ssto_hap7	2743022	2743023	rs61447909	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Keratinocyte cancer (MTAG)	at least 18,538 European ancestry cases, at least 340,302 European ancestry controls	NA	6p21.33	LINC01149	rs61447909-A	0.098186	4E-13		1.098901	[1.08-1.14]	Affymetrix [7600000] (imputed)	N
605	chr6_ssto_hap7	2743305	2743306	rs2844512	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cervical cancer	967 East Asian ancestry cases, 60,614 East Asian ancestry controls	NA	6p21.33		rs2844512-G	0.576319779	1E-12		0.34585676	[0.25-0.44] unit decrease	Illumina [13381745] (imputed)	N
605	chr6_ssto_hap7	2744147	2744148	rs2844510	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls	NA	6p21.33	MICB, MICA	rs2844510-T	0.11	2E-6	(conditioned on rs2596464 and rs2855812)	0.09	[0.051-0.129] unit increase	Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
605	chr6_ssto_hap7	2744260	2744261	rs3093958	35074870	Chia R	2022-02-01	Proc Natl Acad Sci U S A	Identification of genetic risk loci and prioritization of genes and pathways for myasthenia gravis: a genome-wide association study.	Early-onset myasthenia gravis	595 European ancestry cases, 2,718 European ancestry controls	NA	6p21.33		rs3093958-G	0.094	4E-42		4.49	[3.62-5.57]	Illumina [24006246] (imputed)	N
605	chr6_ssto_hap7	2744260	2744261	rs3093958	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p21.33	NR	rs3093958-?	NR	6E-7		4.984	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
605	chr6_ssto_hap7	2744263	2744264	rs6928810	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	6p21.33	HCP5, LINC01149	rs6928810-T	0.246387	1E-14		0.022360196	[0.017-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
605	chr6_ssto_hap7	2746166	2746167	rs34624527	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	6p21.33	HCP5, LINC01149	rs34624527-A	0.4973	2E-15		0.02871944	[0.022-0.036] unit increase	Affymetrix [~ 2500000] (imputed)	N
605	chr6_ssto_hap7	2746682	2746683	rs2596465	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mononucleosis	17,457 European ancestry cases, 68,446 European ancestry controls	NA	6p21.33	MICA, MICB, HLA	rs2596465-T	0.47	2E-9		1.08	[1.06-1.09]	Illumina [at least 560000] (imputed)	N
605	chr6_ssto_hap7	2746695	2746696	rs2596464	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma (childhood onset)	7,131 European ancestry cases, 13,631 European ancestry controls, 1,239 Japanese ancestry cases, 3,976 Japanese ancestry controls, 606 Latino cases, 792 Latino controls	NA	6p21.33	MICB, MICA	rs2596464-C	NR	1E-8		1.12	[1.08-1.17]	Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
605	chr6_ssto_hap7	2746695	2746696	rs2596464	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls	NA	6p21.33	MICA, MICB	rs2596464-C	0.48	2E-13		0.09	[0.07-0.11] unit increase	Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
605	chr6_ssto_hap7	2747252	2747253	rs41287767	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28- CD8+ T cell %T cell	3,440 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs41287767-T	0.43459	5E-8		0.1673	[0.11-0.23] unit decrease	Illumina [18357815] (imputed)	N
605	chr6_ssto_hap7	2747440	2747441	rs56263516	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Uterine fibroids	21,024 European ancestry cases, 237,694 European ancestry controls, 14,475 East Asian ancestry cases, 65,733 East Asian ancestry controls	NA	6p21.33		rs56263516-G	NR	4E-8		0.0661	[0.042-0.09] unit increase	Affymetrix, Illumina [25795146] (imputed)	N
605	chr6_ssto_hap7	2747440	2747441	rs56263516	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCP5, LINC01149	rs56263516-G	NR	2E-8		0.0301139	[0.02-0.041] unit increase	Affymetrix [323858] (imputed)	N
605	chr6_ssto_hap7	2747440	2747441	rs56263516	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HCP5, LINC01149	rs56263516-G	NR	3E-8		0.0297948	[0.019-0.04] unit increase	Affymetrix [127266] (imputed)	N
605	chr6_ssto_hap7	2747542	2747543	rs9267091	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.33	LINC01149, HCP5	rs9267091-A	0.228	9E-6		0.0351	[0.02-0.051] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
605	chr6_ssto_hap7	2748060	2748061	rs2516466	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6p21.33	NR	rs2516466-G	0.5538	4E-20		1.0564125	[1.04-1.07]	Affymetrix [15688218] (imputed)	N
605	chr6_ssto_hap7	2748467	2748468	rs2523696	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	6p21.33	LINC01149	rs2523696-T	0.4403	9E-15		0.02759642	[0.021-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
605	chr6_ssto_hap7	2748646	2748647	rs2516465	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.33	NR	rs2516465-T	0.095	6E-48	(conditional)	2.113	[2.01-2.21]	Illumina [11270530] (imputed)	N
605	chr6_ssto_hap7	2748805	2748806	rs3131627	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28+ CD45RA+ CD8+ T cell Absolute Count	3,408 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs3131627-G	0.49139	2E-9		0.1259	[0.085-0.167] unit increase	Illumina [18340221] (imputed)	N
605	chr6_ssto_hap7	2749095	2749096	rs9267098	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	6p21.33	HCP5	rs9267098-G	0.2684	8E-31		0.04978207	[0.041-0.058] unit decrease	Affymetrix [~ 2500000] (imputed)	N
605	chr6_ssto_hap7	2749592	2749593	rs4458721	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.33	NR	rs4458721-T	0.249	3E-10		1.181	[1.13-1.23]	Illumina [11270530] (imputed)	N
605	chr6_ssto_hap7	2750731	2750732	rs2524280	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	HLA-C, MICA, Y_RNA, HLA-B, XXbac-BPG248L24.12, MIR6891, HLA-S, XXbac-BPG181B23.7, HCP5, LINC01149, XXbac-BPG181B23.6	rs2524280-A	0.07437186	3E-24	(EA, MHC class I polypeptide-related sequence A)	0.8388	[0.68-1] unit decrease	Affymetrix [509946]	N
605	chr6_ssto_hap7	2751197	2751198	rs9501130	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p21.33	LINC01149	rs9501130-G	0.822	2E-11		0.099	[0.07-0.128] unit increase	Affymetrix, Illumina [7374092] (imputed)	N
605	chr6_ssto_hap7	2751281	2751282	rs2596459	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD45RA+ CD8+ T cell %T cell	3,427 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs2596459-T	0.49008	2E-8		0.1499	[0.098-0.202] unit increase	Illumina [18349913] (imputed)	N
605	chr6_ssto_hap7	2751483	2751484	rs10947210	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	6p21.33		rs10947210-T	0.923561	3E-10		0.0453373	[0.031-0.059] unit decrease	NR [11722792] (imputed)	N
605	chr6_ssto_hap7	2751483	2751484	rs10947210	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	6p21.33		rs10947210-T	0.923537	2E-10		0.0471765	[0.033-0.062] unit increase	NR [11722792] (imputed)	N
606	chr6_ssto_hap7	2752551	2752552	rs3131623	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p21.33	MICB, MICA, HLA	rs3131623-T	0.85	2E-15		1.1	[1.09-1.12]	Illumina [at least 560000] (imputed)	N
606	chr6_ssto_hap7	2752806	2752807	rs3130901	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	6p21.33	NR	rs3130901-T	NR	3E-14		0.0315719	[0.024-0.04] unit increase	Affymetrix [16832071] (imputed)	N
606	chr6_ssto_hap7	2753979	2753980	rs2259384	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	6p21.33	HCP5	rs2259384-C	0.484261	6E-11		0.01838512	[0.013-0.024] unit increase	Affymetrix [93095623] (imputed)	N
606	chr6_ssto_hap7	2755032	2755033	rs2263316	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Prostate cancer	7,438 White British ancestry cases, 118,206 White British ancestry controls	NA	6p21.33		rs2263316-?	NR	3E-7		1.09455	[1.06-1.13]	NR [680312]	N
606	chr6_ssto_hap7	2755032	2755033	rs2263316	29185836	Chen MH	2017-11-29	Platelets	Exome-chip meta-analysis identifies association between variation in ANKRD26 and platelet aggregation.	Platelet aggregation	3,664 European ancestry individuals, 549 Old Order Amish (founder/genetic isolate) individuals	1,184 European ancestry individuals, 613 African American individuals	6p21.33	HCP5	rs2263316-G	0.65	1E-6	(ADP high 2)	0.123	[0.074-0.172] unit increase	Illumina [129094]	N
606	chr6_ssto_hap7	2755035	2755036	rs9469012	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	MICA, XXbac-BPG181B23.7, HCP5, Y_RNA, LINC01149, XXbac-BPG181B23.6	rs9469012-A	0.1170535	1E-24	(MHC class I polypeptide-related sequence A)	0.6944	[0.57-0.82] unit decrease	Affymetrix [509946]	N
606	chr6_ssto_hap7	2755340	2755342	rs200779223	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	6p21.33	HCP5	rs200779223-C	0.1305	2E-21		0.05074718	[0.04-0.061] unit increase	Affymetrix [~ 2500000] (imputed)	N
606	chr6_ssto_hap7	2755340	2755340	rs376918999	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	6p21.33		rs376918999-CAT	0.871308	2E-10		0.0374657	[0.026-0.049] unit increase	NR [11722792] (imputed)	N
606	chr6_ssto_hap7	2755340	2755340	rs376918999	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	6p21.33		rs376918999-CAT	0.871308	1E-11		0.0394654	[0.028-0.051] unit increase	NR [11722792] (imputed)	N
606	chr6_ssto_hap7	2755343	2755344	rs9267119	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	6p21.33	NR	rs9267119-C	NR	1E-6		1.098901	[NR]	Illumina [7158791] (imputed)	N
606	chr6_ssto_hap7	2756257	2756258	rs3131621	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (father's age at death or father's attained age)	up to 699,000 European ancestry individuals	NA	6p21.33	NR	rs3131621-A		9E-9				Illumina [458865]	N
606	chr6_ssto_hap7	2756257	2756258	rs3131621	29227965	Pilling LC	2017-12-01	Aging (Albany NY)	Human longevity: 25 genetic loci associated in 389,166 UK biobank participants.	Parental longevity (father's attained age)	415,311 British ancestry individuals	NA	6p21.33	MICA, MICB	rs3131621-A	0.629	4E-8		0.0124	[0.0081-0.0167] unit decrease	Affymetrix [11535925] (imputed)	N
606	chr6_ssto_hap7	2756257	2756258	rs3131621	29227965	Pilling LC	2017-12-01	Aging (Albany NY)	Human longevity: 25 genetic loci associated in 389,166 UK biobank participants.	Parental longevity (combined parental attained age, Martingale residuals)	389,166 British ancestry individuals	NA	6p21.33	MICA, MICB	rs3131621-A	NR	9E-8			[NR]	Affymetrix [11535925] (imputed)	N
606	chr6_ssto_hap7	2757727	2757728	rs3093956	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation Hannum age acceleration	34,449 European ancestry individuals	NA	6p21.33	NR	rs3093956-C	0.1858	9E-10		0.2428	[0.17-0.32] unit increase	Affymetrix, Illumina [7565493] (imputed)	N
606	chr6_ssto_hap7	2758136	2758137	rs113059562	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.33		rs113059562-C	0.985	2E-24				Affymetrix [10369434] (imputed)	N
606	chr6_ssto_hap7	2758155	2758156	rs9267123	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (anilides)	83,218 European ancestry cases, 96,592 European ancestry controls, 4,421 East Asian ancestry cases, 174,305 East Asian ancestry controls	NA	6p21.33		rs9267123-C	NR	4E-14		0.0685	[0.051-0.086] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
606	chr6_ssto_hap7	2758155	2758156	rs9267123	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCP5	rs9267123-C	NR	4E-11		0.0255347	[0.018-0.033] unit increase	Affymetrix [321016] (imputed)	N
606	chr6_ssto_hap7	2758155	2758156	rs9267123	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	6p21.33	NR	rs9267123-C	0.11	2E-19		1.23	[1.19-1.27]	Illumina [8468885] (imputed)	N
606	chr6_ssto_hap7	2758155	2758156	rs9267123	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	6p21.33	HCP5	rs9267123-C	0.1438	4E-6		0.0472	[0.027-0.067] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
606	chr6_ssto_hap7	2759736	2759737	rs2596472	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6p21.33	HCP5	rs2596472-A	0.742388	2E-19		0.026717115	[0.021-0.033] unit increase	Affymetrix [93095623] (imputed)	N
606	chr6_ssto_hap7	2759756	2759757	rs77349273	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p21.33	NR	rs77349273-T	0.097	2E-10	(IFNAR2_of_CD20p)			Illumina [5084123] (imputed)	N
606	chr6_ssto_hap7	2760696	2760697	rs3094228	24586183	Medici M	2014-02-27	PLoS Genet	Identification of novel genetic Loci associated with thyroid peroxidase antibodies and clinical thyroid disease.	Thyroid peroxidase antibody positivity	1,769 European ancestry cases, 16,528 European ancestry controls	922 European ancestry cases, 8,068 European ancestry controls	6p21.33	NR	rs3094228-C		4E-7		1.23	[1.13-1.33]	Affymetrix, Illumina [up to 3437411] (imputed)	N
606	chr6_ssto_hap7	2760829	2760830	rs115846244	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p21.33	NR	rs115846244-?	NR	1E-19		0.1926	[0.15-0.23] unit increase	Illumina [at least 560000] (imputed)	N
606	chr6_ssto_hap7	2760912	2760913	rs2255001	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MICB	5,365 Icelandic ancestry individuals	NA	6p21.33		rs2255001-C	0.1672	1E-33		0.301259	[0.25-0.35] unit decrease	Illumina [7506463] (imputed)	N
606	chr6_ssto_hap7	2761128	2761129	rs4360170	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	6p21.33	HCP5	rs4360170-G	0.051523	3E-15		0.03995371	[0.03-0.05] unit decrease	Affymetrix [93095623] (imputed)	N
606	chr6_ssto_hap7	2761128	2761129	rs4360170	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	6p21.33	MICA, MICB, HCP5, HLA	rs4360170-A	0.91	3E-12		1.13	[1.11-1.16]	Illumina [at least 560000] (imputed)	N
606	chr6_ssto_hap7	2761568	2761569	rs2596473	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCP5, XXbac-BPG181B23.6	rs2596473-T	NR	7E-15		0.0219013	[0.016-0.027] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_ssto_hap7	2761568	2761569	rs2596473	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HCP5, XXbac-BPG181B23.6	rs2596473-T	NR	4E-14		0.021317	[0.016-0.027] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_ssto_hap7	2761568	2761569	rs2596473	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HCP5, XXbac-BPG181B23.6	rs2596473-T	NR	5E-16		0.0231073	[0.018-0.029] unit increase	Affymetrix [321169] (imputed)	N
606	chr6_ssto_hap7	2761568	2761569	rs2596473	31879980	German CA	2019-12-26	Genet Epidemiol	Ordered multinomial regression for genetic association analysis of ordinal phenotypes at Biobank scale.	Hypertension	30,822 British ancestry normal blood pressure individuals, 25,242 British ancestry elevated blood pressure individuals, 50,461 British ancestry stage 1 hypertension individuals, 75,286 British ancestry stage 2 hypertension individuals, 3,754 British ancestry hypertension crisis individuals	NA	6p21.33	HCP5	rs2596473-?	NR	8E-10		0.0382034	NR unit decrease	Affymetrix [464137]	N
606	chr6_ssto_hap7	2762460	2762461	rs2255221	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C4A;C4B	5,353 Icelandic ancestry individuals	NA	6p21.33		rs2255221-T	0.05357	2E-45		0.573646	[0.49-0.65] unit increase	Illumina [7506463] (imputed)	N
606	chr6_ssto_hap7	2762460	2762461	rs2255221	21051598	Pereyra F	2010-11-04	Science	The major genetic determinants of HIV-1 control affect HLA class I peptide presentation.	HIV-1 control	516 European cases, 1,196 European controls, 341 African American cases, 892 African American controls, 117 Hispanic cases, 560 Hispanic controls	NA	6p21.33	intergenic	rs2255221-T	0.137	4E-14	(AA)	2.7	[NR]	Illumina [1384048] (imputed)	N
606	chr6_ssto_hap7	2762549	2762550	rs2395029	30661239	Nicoletti P	2019-01-19	Clin Pharmacol Ther	Drug-induced injury due to flucloxacillin: relevance of multiple HLA alleles.	Drug-induced liver injury (flucloxacillin)	197 European ancestry cases, 6,835 European ancestry controls	NA	6p21.33		rs2395029-?	0.4	6E-97		35.48	[25.38-49.58]	Illumina [NR] (imputed)	N
606	chr6_ssto_hap7	2762549	2762550	rs2395029	21051598	Pereyra F	2010-11-04	Science	The major genetic determinants of HIV-1 control affect HLA class I peptide presentation.	HIV-1 control	516 European cases, 1,196 European controls, 341 African American cases, 892 African American controls, 117 Hispanic cases, 560 Hispanic controls	NA	6p21.33	HLA-B	rs2395029-G	0.032	1E-25	(EA)	5.3	[NR]	Illumina [1384048] (imputed)	N
606	chr6_ssto_hap7	2762549	2762550	rs2395029	20041166	Fellay J	2009-12-24	PLoS Genet	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	6p21.33	HCP5, HLA-B	rs2395029-G	0.048	5E-35	(setpoint)	5.8	[NR] % increase	Illumina [NR]	N
606	chr6_ssto_hap7	2762549	2762550	rs2395029	20041166	Fellay J	2009-12-24	PLoS Genet	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	6p21.33	HCP5, HLA-B	rs2395029-?	NR	1E-11	(progression)			Illumina [NR]	N
606	chr6_ssto_hap7	2762549	2762550	rs2395029	19483685	Daly AK	2009-05-31	Nat Genet	HLA-B*5701 genotype is a major determinant of drug-induced liver injury due to flucloxacillin.	Drug-induced liver injury (flucloxacillin)	58 European ancestry cases, 282 European ancestry controls	NA	6p21.33	HCP5, HLA-B	rs2395029-?	0.05	9E-33		45.0	[19.4-105]	Illumina [866399]	N
606	chr6_ssto_hap7	2762549	2762550	rs2395029	19115949	Limou S	2009-01-01	J Infect Dis	Genomewide association study of an AIDS-nonprogression cohort emphasizes the role played by HLA genes (ANRS Genomewide Association Study 02).	AIDS progression	275 European ancestry seropositive non-progressors, 86 European ancestry seropositive rapid progressors, 1,352 European ancestry seronegative controls	(see Fellay 2007)	6p21.33	MCCD1, BAT1, TNF, LTB, HCP5, MICB	rs2395029-G	0.03	3E-19		3.47	[2.39-5.04]	Illumina [291119]	N
606	chr6_ssto_hap7	2762549	2762550	rs2395029	18369459	Liu Y	2008-04-04	PLoS Genet	A genome-wide association study of psoriasis and psoriatic arthritis identifies new disease loci.	Psoriasis	218 European ancestry cases, 519 European ancestry controls	1,153 European ancestry cases, 1,217 European ancestry controls	6p21.33	HLA-C	rs2395029-C	0.03	2E-26		4.1	[3.10-5.30]	Illumina [305983]	N
606	chr6_ssto_hap7	2762589	2762590	rs2243621	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.33		rs2243621-C	0.848	4E-26				Affymetrix [10369434] (imputed)	N
606	chr6_ssto_hap7	2762775	2762776	rs2263318	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.33	NR	rs2263318-A	0.059	1E-19		0.597	[0.49-0.71]	Illumina [11270530] (imputed)	N
606	chr6_ssto_hap7	2762894	2762895	rs2284178	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCP5	rs2284178-T	NR	2E-11		0.0209034	[0.015-0.027] unit increase	Affymetrix [323858] (imputed)	N
606	chr6_ssto_hap7	2762894	2762895	rs2284178	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HCP5	rs2284178-T	NR	1E-10		0.0200657	[0.014-0.026] unit increase	Affymetrix [127266] (imputed)	N
606	chr6_ssto_hap7	2762894	2762895	rs2284178	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCP5	rs2284178-T	NR	5E-15		0.0239755	[0.018-0.03] unit decrease	Affymetrix [323123] (imputed)	N
606	chr6_ssto_hap7	2762894	2762895	rs2284178	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	HCP5, XXbac-BPG181B23.6	rs2284178-T	0.4743202	1E-14	(EA, MHC class I polypeptide-related sequence B)	0.3444	[0.26-0.43] unit increase	Affymetrix [509946]	N
606	chr6_ssto_hap7	2764327	2764328	rs3094014	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCP5	rs3094014-A	NR	1E-14		0.0276264	[0.021-0.035] unit decrease	Affymetrix [319769] (imputed)	N
606	chr6_ssto_hap7	2764327	2764328	rs3094014	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HCP5	rs3094014-A	NR	1E-13		0.0265479	[0.02-0.034] unit decrease	Affymetrix [319769] (imputed)	N
606	chr6_ssto_hap7	2764327	2764328	rs3094014	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HCP5	rs3094014-A	NR	1E-14		0.0279942	[0.021-0.035] unit decrease	Affymetrix [321169] (imputed)	N
606	chr6_ssto_hap7	2764335	2764336	rs75640364	30298529	Stanaway IB	2018-10-08	Genet Epidemiol	The eMERGE genotype set of 83,717 subjects imputed to ~40 million variants genome wide and association with the herpes zoster medical record phenotype.	Shingles	3,201 European ancestry cases, 34,960 European ancestry controls, 398 African American cases, 5,922 African American controls, 756 Asian ancestry individuals	NA	6p21.33	HCP5	rs75640364-G	0.91	8E-9	(EA)	1.36	NR	Affymetrix, Illumina [39127678] (imputed)	N
606	chr6_ssto_hap7	2764481	2764482	rs79022003	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	6p21.33	HCP5	rs79022003-C	0.0275	3E-9		0.06434919	[0.043-0.086] unit decrease	Affymetrix [~ 2500000] (imputed)	N
606	chr6_ssto_hap7	2764578	2764579	rs112723370	33105104	Hoi-Yee Li G	2020-12-01	Eur J Endocrinol	Genome-wide meta-analysis reveals novel susceptibility loci for thyrotoxic periodic paralysis.	Thyrotoxic periodic paralysis	319 Chinese ancestry cases, 3,516 Chinese ancestry controls	NA	6p21.33	HCP5	rs112723370-T	0.7932	8E-10		2.569985	2.26932083985339-2.87064883985339	Illumina [7077246] (imputed)	N
606	chr6_ssto_hap7	2764578	2764579	rs112723370	33105104	Hoi-Yee Li G	2020-12-01	Eur J Endocrinol	Genome-wide meta-analysis reveals novel susceptibility loci for thyrotoxic periodic paralysis.	Thyrotoxic periodic paralysis	306 Chinese ancestry male cases, 3,516 Chinese ancestry controls	NA	6p21.33	HCP5	rs112723370-T	0.7925	5E-10		2.634254	1.94219737574364-3.57290860725441	Illumina [7076963] (imputed)	N
606	chr6_ssto_hap7	2764880	2764881	rs3094604	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p21.33	HCP5	rs3094604-G	NR	8E-9		0.0229124	[0.015-0.031] unit decrease	Affymetrix [323858] (imputed)	N
606	chr6_ssto_hap7	2764880	2764881	rs3094604	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Squamous cell lung carcinoma	8,350 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	6p21.33	NR	rs3094604-G	NR	2E-8		0.86	[0.82-0.91]	NR [NR] (imputed)	N
606	chr6_ssto_hap7	2764880	2764881	rs3094604	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6p21.33	HCP5	rs3094604-G	0.184684	2E-12		0.02776865	[0.02-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
606	chr6_ssto_hap7	2764880	2764881	rs3094604	25344690	Feenstra B	2014-10-26	Nat Genet	Common variants associated with general and MMR vaccine-related febrile seizures.	Febrile seizures (MMR vaccine-related)	929 European ancestry cases, 4,118 European ancestry controls	Up to 408 European ancestry cases, Up to 1,645 European ancestry controls	6p21.33	intergenic	rs3094604-A	0.833	1E-7		1.39	[1.23-1.57]	Illumina [8129524] (imputed)	N
606	chr6_ssto_hap7	2765103	2765104	rs2523679	34642315	Ferreiro-Iglesias A	2021-10-12	Nat Commun	Germline determinants of humoral immune response to HPV-16 protect against oropharyngeal cancer.	Human papilloma virus 16 positive oropharyngeal cancer	1,078 European ancestry cases, 5,256 European ancestry controls	NA	6p21.33		rs2523679-T	NR	3E-9		0.5079		Illumina [7574753] (imputed)	N
606	chr6_ssto_hap7	2765135	2765136	rs3094013	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.33	TCF19	rs3094013-G	0.8714999999999999	5E-8	(EA, men)	0.0494	[0.032-0.067] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
606	chr6_ssto_hap7	2765135	2765136	rs3094013	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6p21.33	TCF19	rs3094013-G	0.8733	2E-6	(EA, men)	0.0486	[0.028-0.069] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
606	chr6_ssto_hap7	2765135	2765136	rs3094013	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.33	TCF19	rs3094013-?	0.8714999999999999	8E-7	(EA, men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
606	chr6_ssto_hap7	2765135	2765136	rs3094013	26362759	Rothwell S	2015-09-11	Ann Rheum Dis	Dense genotyping of immune-related loci in idiopathic inflammatory myopathies confirms HLA alleles as the strongest genetic risk factor and suggests different genetic background for major clinical subgroups.	Polymyositis	931 European ancestry cases, 15,651 European ancestry controls		6p21.33	HLA	rs3094013-T	0.12	6E-76		2.97	[2.64-3.33]	Illumina [90536]	N
606	chr6_ssto_hap7	2765570	2765571	rs2523677	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	6p21.33	HCP5	rs2523677-T	0.079494	1E-12		0.033747673	[0.024-0.043] unit increase	Affymetrix [93095623] (imputed)	N
606	chr6_ssto_hap7	2766637	2766638	rs4713466	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCP5	rs4713466-T	NR	4E-8		0.0226314	[0.015-0.031] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_ssto_hap7	2766637	2766638	rs4713466	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HCP5	rs4713466-T	NR	3E-8		0.0227762	[0.015-0.031] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_ssto_hap7	2766800	2766801	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	VLDL cholesterol levels	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	3E-11		0.0291124	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
606	chr6_ssto_hap7	2766800	2766801	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very small VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	2E-19		0.0385398	[0.03-0.047] unit decrease	NR [11722792] (imputed)	N
606	chr6_ssto_hap7	2766800	2766801	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large LDL	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	2E-16		0.0354641	[0.027-0.044] unit decrease	NR [11722792] (imputed)	N
606	chr6_ssto_hap7	2766800	2766801	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in LDL	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	7E-17		0.035861	[0.027-0.044] unit decrease	NR [11722792] (imputed)	N
606	chr6_ssto_hap7	2766800	2766801	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in IDL	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	4E-18		0.0372214	[0.029-0.046] unit decrease	NR [11722792] (imputed)	N
606	chr6_ssto_hap7	2766800	2766801	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very small VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	6E-11		0.0281413	[0.02-0.037] unit decrease	NR [11722792] (imputed)	N
606	chr6_ssto_hap7	2766800	2766801	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	8E-13		0.0302194	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
606	chr6_ssto_hap7	2766800	2766801	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	1E-15		0.0347493	[0.026-0.043] unit decrease	NR [11722792] (imputed)	N
606	chr6_ssto_hap7	2766800	2766801	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	2E-12		0.0299561	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
606	chr6_ssto_hap7	2766800	2766801	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	2E-10		0.026718	[0.018-0.035] unit decrease	NR [11722792] (imputed)	N
606	chr6_ssto_hap7	2766800	2766801	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	6E-14		0.0322744	[0.024-0.041] unit decrease	NR [11722792] (imputed)	N
606	chr6_ssto_hap7	2766800	2766801	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very small VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	8E-12		0.0294512	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
606	chr6_ssto_hap7	2766800	2766801	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	2E-12		0.0299045	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
606	chr6_ssto_hap7	2766800	2766801	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	2E-12		0.0308819	[0.022-0.039] unit decrease	NR [11722792] (imputed)	N
606	chr6_ssto_hap7	2766800	2766801	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	3E-13		0.0308617	[0.023-0.039] unit decrease	NR [11722792] (imputed)	N
606	chr6_ssto_hap7	2766800	2766801	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	7E-14		0.0323789	[0.024-0.041] unit decrease	NR [11722792] (imputed)	N
606	chr6_ssto_hap7	2766800	2766801	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	1E-12		0.03014	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
606	chr6_ssto_hap7	2766800	2766801	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	4E-13		0.0307696	[0.022-0.039] unit decrease	NR [11722792] (imputed)	N
606	chr6_ssto_hap7	2766800	2766801	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	8E-13		0.0311502	[0.023-0.04] unit decrease	NR [11722792] (imputed)	N
606	chr6_ssto_hap7	2766800	2766801	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very small VLDL particles	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	9E-10		0.0264832	[0.018-0.035] unit decrease	NR [11722792] (imputed)	N
606	chr6_ssto_hap7	2766800	2766801	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large VLDL particles	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	8E-13		0.0301814	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
606	chr6_ssto_hap7	2766800	2766801	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small VLDL particles	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	1E-15		0.0345389	[0.026-0.043] unit decrease	NR [11722792] (imputed)	N
606	chr6_ssto_hap7	2766800	2766801	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large VLDL particles	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	7E-13		0.0303598	[0.022-0.039] unit decrease	NR [11722792] (imputed)	N
606	chr6_ssto_hap7	2766800	2766801	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of chylomicrons and extremely large VLDL particles	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	8E-11		0.0273614	[0.019-0.036] unit decrease	NR [11722792] (imputed)	N
606	chr6_ssto_hap7	2766800	2766801	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of VLDL particles	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	2E-13		0.0320006	[0.023-0.041] unit decrease	NR [11722792] (imputed)	N
606	chr6_ssto_hap7	2766800	2766801	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	4E-9		0.0250628	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
606	chr6_ssto_hap7	2766800	2766801	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	6E-12		0.0296805	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
606	chr6_ssto_hap7	2766800	2766801	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	1E-11		0.0297703	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
606	chr6_ssto_hap7	2766800	2766801	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	2E-12		0.030433	[0.022-0.039] unit decrease	NR [11722792] (imputed)	N
606	chr6_ssto_hap7	2766800	2766801	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	5E-12		0.0292494	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
606	chr6_ssto_hap7	2766800	2766801	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	1E-12		0.0304211	[0.022-0.039] unit decrease	NR [11722792] (imputed)	N
606	chr6_ssto_hap7	2766800	2766801	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	7E-11		0.0286405	[0.02-0.037] unit decrease	NR [11722792] (imputed)	N
606	chr6_ssto_hap7	2766800	2766801	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	6E-13		0.0309269	[0.023-0.039] unit decrease	NR [11722792] (imputed)	N
606	chr6_ssto_hap7	2766800	2766801	rs2523675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6p21.33		rs2523675-G	0.657881	2E-12		0.0297343	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
606	chr6_ssto_hap7	2767232	2767233	rs77523206	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	6p21.33	NR	rs77523206-?	NR	1E-93		20.529	NR z score increase	Illumina [at least 830937] (imputed)	N
606	chr6_ssto_hap7	2767760	2767761	rs2523673	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.33		rs2523673-T	0.539	1E-32				Affymetrix [10369434] (imputed)	N
606	chr6_ssto_hap7	2767760	2767761	rs2523673	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.33		rs2523673-T	0.539	4E-28				Affymetrix [10369434] (imputed)	N
606	chr6_ssto_hap7	2767760	2767761	rs2523673	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	6p21.33	HCP5	rs2523673-C	0.4598	2E-30		0.04180668	[0.035-0.049] unit decrease	Affymetrix [~ 2500000] (imputed)	N
606	chr6_ssto_hap7	2768458	2768461	rs139043330	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	133,336 East Asian ancestry individuals	NA	6p21.33		rs139043330-G	0.154197	1E-10		0.0313843	[0.022-0.041] unit decrease	Illumina [13476509] (imputed)	N
606	chr6_ssto_hap7	2769008	2769009	rs2596450	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	6p21.33	NR	rs2596450-?	NR	8E-6		0.0425	[0.024-0.061] unit decrease	Illumina [at least 560000] (imputed)	N
606	chr6_ssto_hap7	2769133	2769134	rs2244839	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCP5	rs2244839-A	NR	8E-12		0.0228771	[0.016-0.029] unit decrease	Affymetrix [321016] (imputed)	N
606	chr6_ssto_hap7	2769155	2769156	rs2596449	26151496	Chen PL	2015-07-07	Nat Commun	Genetic determinants of antithyroid drug-induced agranulocytosis by human leukocyte antigen genotyping and genome-wide association study.	Thionamide-induced agranulocytosis in Graves' disease	21 East Asian ancestry cases with agranulocytosis, 662 East Asian ancestry cases without agranulocytosis	21 East Asian ancestry cases with agranulocytosis, 546 East Asian ancestry cases without agranulocytosis	6p21.33	HLA	rs2596449-A	0.047	2E-13	(trend)	6.35	[3.68-10.96] (allelic)	Affymetrix [522980]	N
606	chr6_ssto_hap7	2770424	2770425	rs9688839	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MICB	5,365 Icelandic ancestry individuals	NA	6p21.33		rs9688839-G	0.06745	2E-66		0.633901	[0.56-0.71] unit increase	Illumina [7506463] (imputed)	N
606	chr6_ssto_hap7	2770611	2770612	rs3094603	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	6p21.33		rs3094603-G	0.704515	7E-9		0.0251235	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
606	chr6_ssto_hap7	2770779	2770780	rs14597	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	6p21.33	NR	rs14597-A	0.433533	3E-9		0.0405708	[0.027-0.054] unit increase	Affymetrix [17914406] (imputed)	N
606	chr6_ssto_hap7	2770847	2770848	rs1055569	25897833	Thompson AG	2015-04-21	Transl Psychiatry	Genome-wide association study of behavioural and psychiatric features in human prion disease.	Psychotic symptoms and prion disease	Up to 170 cases, 5,200 controls	NA	6p21.33	HCG26	rs1055569-?	0.291	3E-6		2.36	[1.66-3.35]	Illumina [518938]	N
606	chr6_ssto_hap7	2771074	2771075	rs2523659	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large HDL	115,082 European ancestry individuals	NA	6p21.33		rs2523659-T	0.698051	3E-11		0.0290837	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
606	chr6_ssto_hap7	2771074	2771075	rs2523659	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCP5	rs2523659-G	NR	4E-8		0.0169129	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_ssto_hap7	2771416	2771417	rs3828889	30833571	Wiberg A	2019-03-04	Nat Commun	A genome-wide association analysis identifies 16 novel susceptibility loci for carpal tunnel syndrome.	Carpal tunnel syndrome	12,312 European ancestry cases, 389,344 European ancestry controls	NA	6p21.33	Intergenic	rs3828889-C	0.732	2E-8		1.09	[1.06-1.12]	Affymetrix [84000000] (imputed)	N
606	chr6_ssto_hap7	2771434	2771435	rs3828890	22797727	Okada Y	2012-07-15	Nat Genet	Meta-analysis identifies multiple loci associated with kidney function-related traits in east Asian populations.	Renal function-related traits (sCR)	42,257 East Asian, South Asian, and South East Asian ancestry individuals	19,662 East Asian ancestry individuals	6p21.33	MHC	rs3828890-G	0.11	3E-9		0.0069	[0.0046-0.0092] mg/dl increase	Affymetrix, Illumina [2353587] (imputed)	N
606	chr6_ssto_hap7	2771434	2771435	rs3828890	22797727	Okada Y	2012-07-15	Nat Genet	Meta-analysis identifies multiple loci associated with kidney function-related traits in east Asian populations.	Renal function-related traits (eGRFcrea)	42,451 East Asian, South Asian, and South East Asian ancestry individuals	19,636 East Asian ancestry individuals	6p21.33	MHC	rs3828890-G	0.11	1E-9		0.0079	[0.0054-0.0105] ml/min/1.73m2 decrease	Affymetrix, Illumina [2353587] (imputed)	N
606	chr6_ssto_hap7	2771734	2771734	rs9281492	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.33	HCP5	rs9281492-A	0.7482	1E-6		0.041	[0.024-0.058] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
606	chr6_ssto_hap7	2772115	2772116	rs4413654	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCP5	rs4413654-A	NR	2E-9		0.0202622	[0.014-0.027] unit decrease	Affymetrix [321016] (imputed)	N
606	chr6_ssto_hap7	2772449	2772450	rs145038238	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Treatment or medication use - levothyroxine sodium (UKB data field 20003_1141191044)	18,688 European ancestry cases, 437,588 European ancestry controls	NA	6p21.33		rs145038238-A	0.003929	1E-9		0.54	[0.36-0.72] unit increase	NR [11842647] (imputed)	N
606	chr6_ssto_hap7	2773497	2773498	rs2844503	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCP5	rs2844503-A	NR	2E-11		0.0191544	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_ssto_hap7	2773497	2773498	rs2844503	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	HCP5	rs2844503-A	NR	6E-11		0.0185817	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_ssto_hap7	2773497	2773498	rs2844503	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCP5	rs2844503-A	NR	2E-11		0.0189754	[0.013-0.025] unit decrease	Affymetrix [321016] (imputed)	N
606	chr6_ssto_hap7	2773497	2773498	rs2844503	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCP5	rs2844503-A	NR	4E-10		0.0193246	[0.013-0.025] unit decrease	Affymetrix [323123] (imputed)	N
606	chr6_ssto_hap7	2773497	2773498	rs2844503	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HCP5	rs2844503-A	NR	3E-10		0.018057	[0.012-0.024] unit increase	Affymetrix [321169] (imputed)	N
606	chr6_ssto_hap7	2773548	2773549	rs3131643	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Creatinine levels	110,051 European ancestry individuals	NA	6p21.33		rs3131643-G	0.840442	8E-10		0.0296468	[0.02-0.039] unit decrease	NR [11722792] (imputed)	N
606	chr6_ssto_hap7	2773548	2773549	rs3131643	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.33		rs3131643-G	0.84	2E-102				Affymetrix [10369434] (imputed)	N
606	chr6_ssto_hap7	2773548	2773549	rs3131643	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p21.33	HCP5	rs3131643-A	0.158883	4E-12		0.027895512	[0.02-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
606	chr6_ssto_hap7	2773548	2773549	rs3131643	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.33	HCP5	rs3131643-A	0.15885	1E-15		0.04733108	[0.036-0.059] unit decrease	Affymetrix [93095623] (imputed)	N
606	chr6_ssto_hap7	2773548	2773549	rs3131643	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count (basophil)	171,846 European ancestry individuals	NA	6p21.33	HCP5	rs3131643-A	0.1597	2E-24		0.04853096	[0.039-0.058] unit decrease	Affymetrix [~ 2500000] (imputed)	N
606	chr6_ssto_hap7	2773548	2773549	rs3131643	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	6p21.33	HCP5	rs3131643-A	0.1597	4E-107		0.1077558	[0.098-0.117] unit decrease	Affymetrix [~ 2500000] (imputed)	N
606	chr6_ssto_hap7	2773678	2773679	rs79501286	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Chickenpox	107,769 European ancestry cases, 15,982 European ancestry controls	NA	6p21.33	NR	rs79501286-?	NR	2E-9		0.13	[0.088-0.172] unit increase	Illumina [at least 560000] (imputed)	N
606	chr6_ssto_hap7	2775375	2775376	rs2523655	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	150,545 East Asian ancestry individuals	NA	6p21.33		rs2523655-G	0.870322	1E-8		0.0292114	[0.019-0.039] unit decrease	Illumina [13478866] (imputed)	N
606	chr6_ssto_hap7	2776285	2776286	rs2523653	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Angina pectoris	14,007 East Asian ancestry cases, 145,158 East Asian ancestry controls	NA	6p21.33		rs2523653-G	0.805782921	3E-12		0.12027492	[0.087-0.154] unit decrease	Illumina [13426705] (imputed)	N
606	chr6_ssto_hap7	2776335	2776336	rs17206973	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p21.33	NR	rs17206973-?	NR	2E-22		0.2134	[0.17-0.26] unit decrease	Illumina [at least 560000] (imputed)	N
606	chr6_ssto_hap7	2777237	2777238	rs2248372	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCP5	rs2248372-A	NR	4E-8		0.0185638	[0.012-0.025] unit increase	Affymetrix [323858] (imputed)	N
606	chr6_ssto_hap7	2777237	2777238	rs2248372	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	HCP5	rs2248372-A	0.3318273	1E-19	(MHC class I polypeptide-related sequence B)	0.4168	[0.33-0.5] unit increase	Affymetrix [509946]	N
606	chr6_ssto_hap7	2777567	2777568	rs2248462	22286212	Urayama KY	2012-01-27	J Natl Cancer Inst	Genome-wide association study of classical Hodgkin lymphoma and Epstein-Barr virus status-defined subgroups.	Hodgkin's lymphoma	1,200 European ancestry cases, 6,417 European ancestry controls	563 European ancestry cases, 613 European ancestry controls	6p21.33	MICB	rs2248462-?	NR	7E-16	(Total cHL)	1.64	[1.45-1.85]	Illumina [502514]	N
606	chr6_ssto_hap7	2778359	2778360	rs2516513	32376702	Shen J	2020-05-06	mSphere	Genetic Association Reveals Protection against Recurrence of Clostridium difficile Infection with Bezlotoxumab Treatment.	Recurrence of Clostridium difficile infection x bezlotuxumab treatment interaction (2df test)	704 European, African American and Asian ancestry individuals	NA	6p21.33	NR	rs2516513-T	0.41	3E-8				Affymetrix [7570264] (imputed)	N
606	chr6_ssto_hap7	2779423	2779424	rs116518228	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCP5	rs116518228-T	NR	2E-8		0.032993	[0.022-0.044] unit decrease	Affymetrix [323123] (imputed)	N
606	chr6_ssto_hap7	2779633	2779634	rs3749946	24837172	Juyal G	2014-05-16	Gut	Genome-wide association scan in north Indians reveals three novel HLA-independent risk loci for ulcerative colitis.	Ulcerative colitis	603 North Indian ancestry cases, 622 North Indian ancestry controls	733 North Indian ancestry cases, 1,148 North Indian ancestry controls	6p21.33	3.8-1, HCG26	rs3749946-A	0.07	2E-15		1.97	[1.66-2.33]	Illumina [480391]	N
606	chr6_ssto_hap7	2779747	2779748	rs3099844	22399527	Kristiansson K	2012-03-07	Circ Cardiovasc Genet	Genome-wide screen for metabolic syndrome susceptibility Loci reveals strong lipid gene contribution but no evidence for common genetic basis for clustering of metabolic syndrome traits.	Metabolic syndrome	2,637 European ancestry cases, 7,927 European ancestry controls	NA	6p21.33	HCG26, MICB	rs3099844-A	0.08	2E-8	(HDL)	0.15	[NR] mmol/l decrease	Illumina [1257079] (imputed)	N
606	chr6_ssto_hap7	2779747	2779748	rs3099844	20662065	Clancy RM	2010-07-26	Arthritis Rheum	Identification of candidate loci at 6p21 and 21q22 in a genome-wide association study of cardiac manifestations of neonatal lupus.	Neonatal lupus	116 European ancestry cases, 3,351 European ancestry controls	NA	6p21.33	NFKBIL1, LTA, AIF1, TNF, LTB	rs3099844-?	0.11	5E-10		3.34	[2.29-4.89]	Illumina [346110]	N
606	chr6_ssto_hap7	2779793	2779794	rs2523650	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	6p21.33	HCG26, MICB, HCP5, MCCD1, ATP6V1G2-DDX39B, DDX39B, SNORD117, SNORD84, DDX39B-AS1, ATP6V1G2, NFKBIL1, MICA, LTA, TNF, LTB, LST1, NCR3, HLA-B, AIF1, PRRC2A, SNORA38, MIR6832, BAG6, APOM, C6orf47, GPANK1, CSNK2B, LY6G5B, LY6G5C, ABHD16A, MIR4646, LY6G6F, LY6G6E, LY6G6D, LY6G6C, C6orf25, DDAH2	rs2523650-?		5E-7	(recessive)	0.167	[0.1-0.23] unit decrease	Illumina [1492601] (imputed)	N
606	chr6_ssto_hap7	2779793	2779794	rs2523650	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	6p21.33	HCG26, MICB, HCP5, MCCD1, ATP6V1G2-DDX39B, DDX39B, SNORD117, SNORD84, DDX39B-AS1, ATP6V1G2, NFKBIL1, MICA, LTA, TNF, LTB, LST1, NCR3, HLA-B, AIF1, PRRC2A, SNORA38, MIR6832, BAG6, APOM, C6orf47, GPANK1, CSNK2B, LY6G5B, LY6G5C, ABHD16A, MIR4646, LY6G6F, LY6G6E, LY6G6D, LY6G6C, C6orf25, DDAH2	rs2523650-?		3E-6	(additive)	0.121	[0.07-0.172] unit decrease	Illumina [1492601] (imputed)	N
606	chr6_ssto_hap7	2779793	2779794	rs2523650	31189108	O'Connor D	2019-06-01	Cell Rep	Common Genetic Variations Associated with the Persistence of Immunity following Childhood Immunization.	Tetanus toxoid IgG concentrations post childhood immunization	549 European ancestry children and adolescents	1,303 European ancestry children and adolescents	6p21.33	NR	rs2523650-?	NR	1E-9		0.1117	[0.076-0.147] unit increase	Illumina [~ 6700000] (imputed)	N
606	chr6_ssto_hap7	2780388	2780389	rs2516420	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	6p21.33	MHC	rs2516420-C	0.9263	1E-7		1.1	[1.06-1.13]	Affymetrix, Illumina [16900397] (imputed)	N
606	chr6_ssto_hap7	2780410	2780411	rs2523648	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCP5	rs2523648-A	NR	4E-8		0.0208118	[0.013-0.028] unit increase	Affymetrix [323858] (imputed)	N
606	chr6_ssto_hap7	2780410	2780411	rs2523648	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	HCP5	rs2523648-A	NR	5E-8		0.0207421	[0.013-0.028] unit increase	Affymetrix [127266] (imputed)	N
606	chr6_ssto_hap7	2781484	2781485	rs2905752	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	6p21.33	Intergenic	rs2905752-G	NR	2E-7		0.0193848	[0.012-0.027] unit decrease	Illumina [13519193] (imputed)	N
606	chr6_ssto_hap7	2781678	2781679	rs2523710	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	Intergenic	rs2523710-A	0.2052314	6E-15	(EA, MHC class I polypeptide-related sequence A)	0.4247	[0.32-0.53] unit decrease	Affymetrix [509946]	N
606	chr6_ssto_hap7	2782615	2782616	rs2904602	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	HCP5	rs2904602-A	NR	1E-9		0.0273048	[0.019-0.036] unit decrease	Affymetrix [321016] (imputed)	N
606	chr6_ssto_hap7	2782806	2782807	rs143439747	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs143439747-A	0.049	9E-14	(Natural cytotoxicity triggering receptor 3, NCR3.3003.29.2)	0.42	[0.3-0.54] unit decrease	Affymetrix [10572788] (imputed)	N
606	chr6_ssto_hap7	2782806	2782807	rs143439747	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mumps	31,227 European ancestry cases, 54,153 European ancestry controls	NA	6p21.33	NR	rs143439747-?	NR	4E-6		0.1204	[0.069-0.171] unit increase	Illumina [at least 560000] (imputed)	N
606	chr6_ssto_hap7	2782870	2782871	rs28525417	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	HCP5	rs28525417-G	NR	3E-8		0.0185461	[0.012-0.025] unit decrease	Affymetrix [323123] (imputed)	N
606	chr6_ssto_hap7	2782870	2782871	rs28525417	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	HCP5	rs28525417-G	NR	4E-8		0.0171664	[0.011-0.023] unit increase	Affymetrix [321169] (imputed)	N
606	chr6_ssto_hap7	2783059	2783060	rs2905741	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (underestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	6p21.33	NR	rs2905741-?	NR	1E-8		5.689	NR z score increase	Illumina [at least 830937] (imputed)	N
606	chr6_ssto_hap7	2783177	2783181	rs144801046	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls, 20,367 East Asian ancestry cases, 158,359 East Asian ancestry controls	NA	6p21.33		rs144801046-C	NR	2E-13		0.1571	[0.12-0.2] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
606	chr6_ssto_hap7	2783177	2783181	rs144801046	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (beta blocking agents)	20,367 East Asian ancestry cases, 158,359 East Asian ancestry controls	NA	6p21.33		rs144801046-C	0.072674614	2E-13		0.15705363	[0.12-0.2] unit increase	Illumina [13134967] (imputed)	N
606	chr6_ssto_hap7	2783199	2783200	rs2904789	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.33	NR	rs2904789-?	NR	5E-11				Affymetrix [~ 8270000] (imputed)	N
606	chr6_ssto_hap7	2784057	2784058	rs2905736	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MICB	5,365 Icelandic ancestry individuals	NA	6p21.33		rs2905736-A	0.0328	1E-193		1.45308	[1.36-1.55] unit increase	Illumina [7506463] (imputed)	N
606	chr6_ssto_hap7	2784057	2784058	rs2905736	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	MICB, LST1, HCP5, XXbac-BPG181B23.6, XXbac-BPG16N22.5, DDX39B, ATP6V1G2, TNF, NCR3, PRRC2A, CSNK2B, GPANK1, LY6G5B, CLIC1, MSH5, VARS, Y_RNA, PPIAP9, RPL15P4, MCCD1, SNORD117, ATP6V1G2-DDX39B, AL662801.1, DDX39B-AS1, SNORD84, NFKBIL1, LTB, LTA, SNORA38, BAG6, CSNK2B-LY6G5B--991, C6orf47-AS1, C6orf47, MSH5-SAPCD1	rs2905736-A	0.03109328	2E-27	(EA, MHC class I polypeptide-related sequence B)	1.367	[1.13-1.61] unit increase	Affymetrix [509946]	N
606	chr6_ssto_hap7	2784314	2784315	rs2428501	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.33	Intergenic	rs2428501-G	NR	1E-6	(men)	0.0231006	[0.014-0.032] unit decrease	Illumina [13520550] (imputed)	N
606	chr6_ssto_hap7	2785130	2785131	rs144596166	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MICB	rs144596166-G	NR	4E-8		0.0340564	[0.022-0.046] unit decrease	Affymetrix [321016] (imputed)	N
606	chr6_ssto_hap7	2786348	2786349	rs9267235	31235810	Fung K	2019-06-24	Sci Rep	Genome-wide association study identifies loci for arterial stiffness index in 127,121 UK Biobank participants.	Arterial stiffness index	127,121 European ancestry individuals	NA	6p21.33	MICB	rs9267235-T	0.954	7E-6		0.044	[0.024-0.064] unit increase	Affymetrix [~ 10446505] (imputed)	N
606	chr6_ssto_hap7	2786915	2786916	rs28664826	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs28664826-A	0.396	1E-46	(MHC class I polypeptide-related sequence B, MICB.5102.55.3)	0.38	[0.32-0.44] unit decrease	Affymetrix [10572788] (imputed)	N
606	chr6_ssto_hap7	2787069	2787070	rs9267257	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p21.33	NR	rs9267257-?	NR	2E-9		0.0961	[0.065-0.127] unit decrease	Illumina [at least 560000] (imputed)	N
606	chr6_ssto_hap7	2788291	2788292	rs150971914	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MICB	rs150971914-T	NR	2E-15		0.0653082	[0.049-0.081] unit decrease	Affymetrix [321016] (imputed)	N
606	chr6_ssto_hap7	2788291	2788292	rs150971914	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MICB	rs150971914-T	NR	7E-9		0.0517554	[0.034-0.069] unit decrease	Affymetrix [323123] (imputed)	N
606	chr6_ssto_hap7	2789796	2789797	rs2016572	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	6p21.33	NR	rs2016572-G	0.331938	6E-12		0.0260936	[0.019-0.033] unit increase	Affymetrix [16577313] (imputed)	N
606	chr6_ssto_hap7	2790156	2790157	rs12192123	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol use disorder	57,564 European ancestry cases, 256,395 European ancestry controls	NA	6p21.33	NR	rs12192123-A	0.2321	2E-8		5.593	[NR] unit decrease	Affymetrix [7003540] (imputed)	N
606	chr6_ssto_hap7	2790769	2790770	rs2904783	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p21.33	NR	rs2904783-C	0.402	9E-6	(IFNalpha_STAT1_of_CD4p_T)			Illumina [5084123] (imputed)	N
606	chr6_ssto_hap7	2791840	2791841	rs12195665	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MICB	rs12195665-A	NR	3E-10		0.0197044	[0.014-0.026] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_ssto_hap7	2791840	2791841	rs12195665	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	MICB	rs12195665-A	NR	4E-10		0.0195546	[0.013-0.026] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_ssto_hap7	2791840	2791841	rs12195665	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	MICB	rs12195665-A	NR	2E-12		0.0223504	[0.016-0.029] unit increase	Affymetrix [321169] (imputed)	N
606	chr6_ssto_hap7	2791850	2791851	rs12202667	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MICB	rs12202667-C	NR	4E-8		0.018764	[0.012-0.025] unit decrease	Affymetrix [323123] (imputed)	N
606	chr6_ssto_hap7	2791929	2791930	rs2904597	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MICB	rs2904597-G	NR	3E-10		0.0229697	[0.016-0.03] unit increase	Affymetrix [323858] (imputed)	N
606	chr6_ssto_hap7	2791929	2791930	rs2904597	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	MICB	rs2904597-G	NR	4E-10		0.0228883	[0.016-0.03] unit increase	Affymetrix [127266] (imputed)	N
606	chr6_ssto_hap7	2791929	2791930	rs2904597	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.33	MICB	rs2904597-G	NR	4E-11		0.0218802	[0.015-0.028] unit increase	Affymetrix [321114] (imputed)	N
606	chr6_ssto_hap7	2792169	2792170	rs2507971	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	6p21.33	MICB	rs2507971-A	0.382584	8E-17		0.022113472	[0.017-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
606	chr6_ssto_hap7	2792169	2792170	rs2507971	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	6p21.33	MICB	rs2507971-T	0.6165	3E-49		0.05419588	[0.047-0.061] unit decrease	Affymetrix [~ 2500000] (imputed)	N
606	chr6_ssto_hap7	2792289	2792290	rs9267325	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	MICB	rs9267325-C	NR	2E-8		0.0226374	[0.015-0.031] unit increase	Affymetrix [321169] (imputed)	N
606	chr6_ssto_hap7	2792355	2792356	rs3094006	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	6p21.33	MICB	rs3094006-C	0.726	1E-12		0.02938566	[0.021-0.037] unit decrease	Affymetrix [~ 2500000] (imputed)	N
606	chr6_ssto_hap7	2792508	2792509	rs2395040	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs2395040-A	0.535	6E-23				Affymetrix [10369434] (imputed)	N
606	chr6_ssto_hap7	2792508	2792509	rs2395040	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	6p21.33	NR	rs2395040-?	NR	9E-7				Illumina [at least 7383741] (imputed)	N
606	chr6_ssto_hap7	2792753	2792754	rs113239947	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	MICB	rs113239947-T	NR	5E-10		0.0206455	[0.014-0.027] unit increase	Affymetrix [321169] (imputed)	N
606	chr6_ssto_hap7	2793121	2793122	rs2516411	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MICB	5,339 Icelandic ancestry individuals	NA	6p21.33		rs2516411-A	0.1051	9E-72		0.494444	[0.44-0.55] unit increase	Illumina [7506463] (imputed)	N
606	chr6_ssto_hap7	2793740	2793741	rs2534681	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MICB	rs2534681-A	NR	6E-11		0.0184043	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_ssto_hap7	2793740	2793741	rs2534681	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	MICB	rs2534681-A	NR	1E-10		0.0181502	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_ssto_hap7	2793740	2793741	rs2534681	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	MICB	rs2534681-A	NR	1E-11		0.0192736	[0.014-0.025] unit increase	Affymetrix [321169] (imputed)	N
606	chr6_ssto_hap7	2793740	2793741	rs2534681	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	6p21.33	Intergenic	rs2534681-A	0.4679	1E-10	(MTAG)	0.0106	[0.0073-0.0139] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
606	chr6_ssto_hap7	2794189	2794190	rs72844762	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.33		rs72844762-G	0.967	3E-22				Affymetrix [10369434] (imputed)	N
606	chr6_ssto_hap7	2794189	2794190	rs72844762	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	6p21.33	MICB	rs72844762-A	0.034026	3E-11		0.042991024	[0.03-0.056] unit increase	Affymetrix [93095623] (imputed)	N
606	chr6_ssto_hap7	2794300	2794301	rs2516408	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	MICB	rs2516408-A	NR	1E-10		0.0219255	[0.015-0.029] unit decrease	Affymetrix [127266] (imputed)	N
606	chr6_ssto_hap7	2795862	2795863	rs3094005	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	HLA-B, MICB, DDX39B, HCG22, HLA-C, XXbac-BPG248L24.12, ZDHHC20P2, MICA, HCP5, SNORD84, LTB, LTA, LST1, NCR3, HCG27, XXbac-BPG299F13.14, XXbac-BPG299F13.15, XXbac-BPG299F13.16, MIR6891, DHFRP2, RNU6-283P, AL671883.1, FGFR3P1, HLA-S, XXbac-BPG181B23.7, LINC01149, XXbac-BPG181B23.6, Y_RNA, XXbac-BPG16N22.5, PPIAP9, DDX39B-AS1, SNORD117, ATP6V1G2-DDX39B, AL662801.1, ATP6V1G2, NFKBIL1, TNF	rs3094005-T	0.09437751	4E-38	(MHC class I polypeptide-related sequence B)	0.9308	[0.8-1.07] unit decrease	Affymetrix [509946]	N
606	chr6_ssto_hap7	2795918	2795919	rs2534674	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	MICB, Y_RNA	rs2534674-T	0.3517588	7E-16	(EA, MHC class I polypeptide-related sequence B)	0.3579	[0.27-0.44] unit increase	Affymetrix [509946]	N
606	chr6_ssto_hap7	2796872	2796873	rs3828919	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	6p21.33	MICB	rs3828919-A	0.044243	9E-12		0.038664818	[0.028-0.05] unit increase	Affymetrix [93095623] (imputed)	N
606	chr6_ssto_hap7	2797032	2797033	rs41293864	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Strep throat	52,487 European ancestry cases, 22,017 European ancestry controls	NA	6p21.33	NR	rs41293864-?	NR	2E-8		0.0446	[0.029-0.06] unit increase	Illumina [at least 560000] (imputed)	N
606	chr6_ssto_hap7	2797089	2797090	rs9267374	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MICB	rs9267374-C	NR	1E-11		0.0224498	[0.016-0.029] unit decrease	Affymetrix [323123] (imputed)	N
606	chr6_ssto_hap7	2798796	2798797	rs9378160	30940813	Kranzler HR	2019-04-02	Nat Commun	Genome-wide association study of alcohol consumption and use disorder in 274,424 individuals from multiple populations.	Alcohol use disorder	34,658 European American cases, 167,346 European American controls, 17,267 African American cases, 39,381 African American controls, 3,449 Latino American cases, 10,726 Latino American controls, 164 East Asian American cases, 1,210 East Asian American controls, 46 South Asian American cases, 144 South Asian American controls	NA	6p21.33	MICB	rs9378160-C	0.719	2E-8	(Latino)	1.1890606	[1.13-1.25]	Affymetrix [up to 12500000] (imputed)	N
606	chr6_ssto_hap7	2799015	2799016	rs188935761	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 142,336 Japanese ancestry controls	NA	6p21.33	MICB	rs188935761-?	NR	5E-6		0.613998	[0.35-0.88] unit increase	Illumina [19707525] (imputed)	N
606	chr6_ssto_hap7	2800395	2800396	rs2534664	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MICB	rs2534664-A	NR	2E-13		0.0226003	[0.017-0.029] unit decrease	Affymetrix [323123] (imputed)	N
606	chr6_ssto_hap7	2802599	2802600	rs2855811	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.33	NR	rs2855811-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
606	chr6_ssto_hap7	2803522	2803523	rs2855812	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.33	NR	rs2855812-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
606	chr6_ssto_hap7	2803522	2803523	rs2855812	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma and major depressive disorder	46,802 European ancestry asthma cases, 59,851 European ancestry major depressive disorder cases, 460,635 European ancestry controls	NA	6p21.33	AIF1, APOM, ATP6V1G2, BAG6, C6orf15, C6orf25, C6orf47, C6orf48, CDSN, CLIC1, CSNK2B, DDAH2, DDX39B, HCG26, HCG27, HCP5, HLA-B, HSPA1A, HSPA1B, HSPA1L, LSM2, LST1, LTA, LTB, LY6G5B, LY6G5C, LY6G6C, LY6G6D, LY6G6E, LY6G6F, MCCD1, MICA, MICB, MIR4646, MIR6832, MIR6891, MSH5, MSH5-SAPCD1, NCR3, NEU1, NFKBIL1, POU5F1, PRRC2A, PSORS1C1, PSORS1C2, PSORS1C3, SAPCD1, SLC44A4, SNORA38, SNORD48, SNORD52, SNORD84, SNORD117, TCF19, TNF, VARS, VWA7, HLA-C, CCHCR1, GPANK1, ABHD16A	rs2855812-?	NR	2E-16				Affymetrix [up to 13554551] (imputed)	N
606	chr6_ssto_hap7	2803522	2803523	rs2855812	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma (childhood onset)	9,676 European ancestry cases, 347,481 European ancestry controls	NA	6p21.33	ABHD16A, AIF1, APOM, ATP6V1G2, ATP6V1G2-DDX39B, BAG6, C6orf15, C6orf25, C6orf47, C6orf48, CCHCR1, CDSN, CLIC1, CSNK2B, DDAH2, DDX39B, GPANK1, HCG26, HCG27, HCP5, HLA-B, HLA-C, HSPA1A, HSPA1B, HSPA1L, LSM2, LST1, LTA, LTB, LY6G5B, LY6G5C, LY6G6C, LY6G6D, LY6G6E, LY6G6F, MCCD1, MICA, MICB, MIR4646, MIR6832, MIR6891, MSH5, MSH5-SAPCD1, NCR3, NEU1, NFKBIL1, POU5F1, PRRC2A, PSORS1C1, PSORS1C2, PSORS1C3, SAPCD1, SLC44A4, SNORA38, SNORD48, SNORD52, SNORD84, SNORD117, TCF19, TNF, VARS, VWA7	rs2855812-?	NR	4E-7		0.118096	[0.071-0.165] unit decrease	Affymetrix [8274727] (imputed)	N
606	chr6_ssto_hap7	2803522	2803523	rs2855812	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs2855812-G	0.7990625	8E-9	(PDIA5, 5593_11_3)	0.1749456	[0.12-0.23] unit decrease	Illumina [> 1000000] (imputed)	N
606	chr6_ssto_hap7	2803522	2803523	rs2855812	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs2855812-G	0.7990625	8E-14	(C4A C4B, 4481_34_2)	0.23044567	[0.17-0.29] unit increase	Illumina [> 1000000] (imputed)	N
606	chr6_ssto_hap7	2803522	2803523	rs2855812	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs2855812-G	0.7990625	7E-11	(C2, 3186_2_2)	0.20260093	[0.14-0.26] unit decrease	Illumina [> 1000000] (imputed)	N
606	chr6_ssto_hap7	2803522	2803523	rs2855812	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs2855812-G	0.7990625	5E-9	(PILRA, 8683_119_3)	0.17610262	[0.12-0.24] unit decrease	Illumina [> 1000000] (imputed)	N
606	chr6_ssto_hap7	2803522	2803523	rs2855812	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs2855812-G	0.7990625	3E-25	(ISG15, 14148_2_3)	0.31585807	[0.26-0.37] unit decrease	Illumina [> 1000000] (imputed)	N
606	chr6_ssto_hap7	2803522	2803523	rs2855812	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs2855812-G	0.7990625	2E-9	(RACGAP1, 13587_10_3)	0.18150227	[0.12-0.24] unit decrease	Illumina [> 1000000] (imputed)	N
606	chr6_ssto_hap7	2803522	2803523	rs2855812	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs2855812-G	0.7990625	2E-25	(MICB, 9328_55_3)	0.31198063	[0.25-0.37] unit increase	Illumina [> 1000000] (imputed)	N
606	chr6_ssto_hap7	2803522	2803523	rs2855812	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs2855812-G	0.7990625	2E-19	(FTMT, 8048_9_3)	0.27116117	[0.21-0.33] unit increase	Illumina [> 1000000] (imputed)	N
606	chr6_ssto_hap7	2803522	2803523	rs2855812	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs2855812-G	0.7990625	2E-126	(MICB, 5102_55_3)	0.69572484	[0.64-0.75] unit increase	Illumina [> 1000000] (imputed)	N
606	chr6_ssto_hap7	2803522	2803523	rs2855812	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs2855812-G	0.7990625	1E-10	(CREB3L4, 11308_8_3)	0.18975821	[0.13-0.25] unit decrease	Illumina [> 1000000] (imputed)	N
606	chr6_ssto_hap7	2803522	2803523	rs2855812	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls, 2,149 African ancestry cases, 6,055 African ancestry controls, 1,239 Japanese ancestry cases, 3,976 Japanese ancestry controls, 606 Latino cases, 792 Latino controls	NA	6p21.33	MICB, HCP5, MCCD1	rs2855812-T	0.23	9E-12		1.1	[1.07-1.13]	Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
606	chr6_ssto_hap7	2803522	2803523	rs2855812	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls	NA	6p21.33	MICB, MICA, MCCD1	rs2855812-T	0.23	3E-10		0.09	[0.07-0.11] unit increase	Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
606	chr6_ssto_hap7	2803522	2803523	rs2855812	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p21.33	NR	rs2855812-?	NR	1E-16		0.213	[0.16-0.26] unit increase	Illumina [at least 560000] (imputed)	N
606	chr6_ssto_hap7	2803522	2803523	rs2855812	28235828	Traglia M	2017-04-03	G3 (Bethesda)	Independent Maternal and Fetal Genetic Effects on Midgestational Circulating Levels of Environmental Pollutants.	Midgestational circulating levels of PBDEs	329 Hispanic mothers, 273 European ancestry mothers, 122 Asian ancestry mothers, 23 South Asian ancestry mothers, 21 African American mothers, 22 other ancestry mothers	NA	6p21.33	MICB	rs2855812-?		8E-7	(BDE-47)	0.33	[0.19-0.47] unit decrease	Affymetrix [629686]	N
606	chr6_ssto_hap7	2803522	2803523	rs2855812	28235828	Traglia M	2017-04-03	G3 (Bethesda)	Independent Maternal and Fetal Genetic Effects on Midgestational Circulating Levels of Environmental Pollutants.	Midgestational circulating levels of PBDEs	329 Hispanic mothers, 273 European ancestry mothers, 122 Asian ancestry mothers, 23 South Asian ancestry mothers, 21 African American mothers, 22 other ancestry mothers	NA	6p21.33	MICB	rs2855812-?		3E-7	(BDE-100)	0.35	[0.21-0.49] unit decrease	Affymetrix [629686]	N
606	chr6_ssto_hap7	2803522	2803523	rs2855812	28235828	Traglia M	2017-04-03	G3 (Bethesda)	Independent Maternal and Fetal Genetic Effects on Midgestational Circulating Levels of Environmental Pollutants.	Midgestational circulating levels of PBDEs	329 Hispanic mothers, 273 European ancestry mothers, 122 Asian ancestry mothers, 23 South Asian ancestry mothers, 21 African American mothers, 22 other ancestry mothers	NA	6p21.33	MICB	rs2855812-?		2E-6	(Sum PBDE)	0.29	[0.17-0.41] unit decrease	Affymetrix [629686]	N
606	chr6_ssto_hap7	2803522	2803523	rs2855812	21946350	Soler Artigas M	2011-09-25	Nat Genet	Genome-wide association and large-scale follow up identifies 16 new loci influencing lung function.	Pulmonary function	48,201 European ancestry individuals	46,411 European ancestry individuals	6p21.33	MICB	rs2855812-T	NR	2E-7	(FEV1)	0.03	[0.018-0.042] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
606	chr6_ssto_hap7	2804759	2804760	rs3134900	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MICB	5,365 Icelandic ancestry individuals	NA	6p21.33		rs3134900-G	0.08239	7E-220		1.01394	[0.95-1.08] unit decrease	Illumina [7506463] (imputed)	N
606	chr6_ssto_hap7	2804759	2804760	rs3134900	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	MICB	rs3134900-G	0.14	3E-101	(MHC class I polypeptide-related sequence B, MICB.5102.55.3)	0.71	[0.65-0.77] unit decrease	Affymetrix [10572788] (imputed)	N
606	chr6_ssto_hap7	2805622	2805623	rs41293883	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Eczema	7,884 European ancestry cases, 239,773 European ancestry controls	21,000 cases, 96,000 controls	6p21.33	HLA-DQB1	rs41293883-?	0.95847	2E-14		1.4541224	[1.33-1.6]	Affymetrix [15688218] (imputed)	N
606	chr6_ssto_hap7	2805858	2805859	rs41273040	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	6p21.33	MICB	rs41273040-G	0.976386	4E-18		0.0571663	[0.044-0.07] unit decrease	Affymetrix [NR] (imputed)	N
606	chr6_ssto_hap7	2805858	2805859	rs41273040	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.33	NR	rs41273040-?	NR	6E-9				Affymetrix [~ 8270000] (imputed)	N
606	chr6_ssto_hap7	2805929	2805930	rs3131638	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	6p21.33	NR	rs3131638-G	0.7739	8E-10		1.0449321	[1.03-1.06]	Affymetrix, Illumina [NR] (imputed)	N
606	chr6_ssto_hap7	2806288	2806289	rs3132468	22001756	Khor CC	2011-10-16	Nat Genet	Genome-wide association study identifies susceptibility loci for dengue shock syndrome at MICB and PLCE1.	Dengue shock syndrome	2,008 Vietnamese ancestry child cases, 2,018 Vietnamese ancestry child controls	1,737 Vietnamese ancestry child cases, 2,934 Vietnamese ancestry child controls	6p21.33	MICB	rs3132468-?	0.13	4E-11		1.34	[1.23-1.46]	Illumina [481342]	N
606	chr6_ssto_hap7	2806457	2806458	rs9380260	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MICB	rs9380260-A	NR	1E-12		0.0271773	[0.02-0.035] unit decrease	Affymetrix [323123] (imputed)	N
606	chr6_ssto_hap7	2807099	2807100	rs62395355	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.33		rs62395355-C	0.821	9E-12				Affymetrix [10369434] (imputed)	N
606	chr6_ssto_hap7	2807099	2807100	rs62395355	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MICB	rs62395355-A	NR	4E-12		0.0253688	[0.018-0.033] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_ssto_hap7	2807099	2807100	rs62395355	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	MICB	rs62395355-A	NR	8E-12		0.0250776	[0.018-0.032] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_ssto_hap7	2807099	2807100	rs62395355	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	MICB	rs62395355-A	NR	3E-10		0.0233476	[0.016-0.031] unit increase	Affymetrix [321169] (imputed)	N
606	chr6_ssto_hap7	2807260	2807261	rs3130614	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	6p21.33	NR	rs3130614-A	0.119161214504899	1E-11		0.013812465	[0.0098-0.0178] unit decrease	NR [NR]	N
606	chr6_ssto_hap7	2807260	2807261	rs3130614	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	6p21.33	NR	rs3130614-A	0.119161214504899	9E-11		0.017454144	[0.012-0.023] unit decrease	NR [NR]	N
606	chr6_ssto_hap7	2807260	2807261	rs3130614	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	6p21.33	NR	rs3130614-A	0.119161214504899	1E-10		0.014875911	[0.01-0.019] unit decrease	NR [NR]	N
606	chr6_ssto_hap7	2807260	2807261	rs3130614	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	6p21.33	NR	rs3130614-A	0.119161214504899	1E-11		0.011892368	[0.0085-0.0153] unit decrease	NR [NR]	N
606	chr6_ssto_hap7	2807260	2807261	rs3130614	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	6p21.33	MICB	rs3130614-T	NR	3E-10		0.19759	[0.14-0.26] unit increase	Illumina [at least 950000] (imputed)	N
606	chr6_ssto_hap7	2807260	2807261	rs3130614	26291516	Miller FW	2015-08-20	Genes Immun	Genome-wide association study identifies HLA 8.1 ancestral haplotype alleles as major genetic risk factors for myositis phenotypes.	Myositis	1,710 European ancestry cases, 4,724 European ancestry controls	NA	6p21.33	MICB	rs3130614-A	NR	4E-48		2.31	[NR]	Illumina [NR] (imputed)	N
606	chr6_ssto_hap7	2807656	2807657	rs2844498	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MICB	rs2844498-T	NR	7E-13		0.0226459	[0.016-0.029] unit increase	Affymetrix [323858] (imputed)	N
606	chr6_ssto_hap7	2807656	2807657	rs2844498	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	MICB	rs2844498-T	NR	8E-12		0.0215973	[0.015-0.028] unit increase	Affymetrix [127266] (imputed)	N
606	chr6_ssto_hap7	2809757	2809758	rs9267431	33692975	Buda P	2021-02-22	Front Pediatr	Association Between rs12037447, rs146732504, rs151078858, rs55723436, and rs6094136 Polymorphisms and Kawasaki Disease in the Population of Polish Children.	Kawasaki disease	119 European ancestry cases, 6,071 European ancestry controls	NA	6p21.33	MICB	rs9267431-A	0.1194	2E-6		2.113	1.547-2.886	Illumina [164395]	N
606	chr6_ssto_hap7	2809792	2809793	rs2246618	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MICB	rs2246618-T	NR	2E-11		0.0226591	[0.016-0.029] unit decrease	Affymetrix [323858] (imputed)	N
606	chr6_ssto_hap7	2809792	2809793	rs2246618	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume (adjusted for hypertension)	46,055 European ancestry individuals, 2,469 African American individuals	NA	6p21.33	MICB	rs2246618-C	0.3118	7E-6		0.0286	[0.016-0.041] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
606	chr6_ssto_hap7	2809792	2809793	rs2246618	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume (adjusted for hypertension)	46,055 European ancestry individuals	NA	6p21.33	MICB	rs2246618-C	0.3118	4E-6		0.029	[0.017-0.041] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
606	chr6_ssto_hap7	2809792	2809793	rs2246618	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	48,454 European ancestry individuals	NA	6p21.33	MICB	rs2246618-C	0.3118	7E-7		0.0307	[0.019-0.043] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
606	chr6_ssto_hap7	2809792	2809793	rs2246618	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	2,516 African American individuals, 48,454 European ancestry individuals	NA	6p21.33	MICB	rs2246618-C	0.3118	2E-6		0.03	[0.018-0.042] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
606	chr6_ssto_hap7	2810451	2810452	rs3132463	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MICB	rs3132463-T	NR	5E-9		0.0213533	[0.014-0.028] unit increase	Affymetrix [323123] (imputed)	N
606	chr6_ssto_hap7	2811475	2811476	rs3132461	28806749	Leo PJ	2017-08-14	PLoS Genet	Defining the genetic susceptibility to cervical neoplasia-A genome-wide association study.	Cervical cancer	2,866 European ancestry cases, 6,481 European ancestry controls	NA	6p21.33	MICB, MCCD1	rs3132461-G	NR	2E-13		1.358	[NR]	Illumina [10863230] (imputed)	N
606	chr6_ssto_hap7	2811899	2811900	rs3132459	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	MICB	rs3132459-C	NR	4E-8		0.0179194	[0.012-0.024] unit increase	Affymetrix [321016] (imputed)	N
606	chr6_ssto_hap7	2812077	2812077	rs5875324	30787463	Escala-Garcia M	2019-02-21	Br J Cancer	Genome-wide association study of germline variants and breast cancer-specific mortality.	Breast cancer specific mortality in breast cancer	7,697 European ancestry cases, 88,964 European ancestry controls	NA	6p21.33	NR	rs5875324-?	NR	2E-6		0.8744475	[0.83-0.92]	Affymetrix, Illumina [~ 10400000] (imputed)	N
606	chr6_ssto_hap7	2812106	2812107	rs2516399	21738478	Okada Y	2011-06-30	PLoS Genet	Identification of nine novel loci associated with white blood cell subtypes in a Japanese population.	White blood cell types	8,794 Japanese ancestry individuals	5,998 Japanese ancestry individuals	6p21.33	MHC	rs2516399-A	0.81	2E-12	(eosinophil count)	0.105	[0.08-0.14] unit increase	Illumina [2178645] (imputed)	N
606	chr6_ssto_hap7	2813948	2813949	rs2844495	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG16N22.5	rs2844495-G	NR	2E-18		0.0261655	[0.02-0.032] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_ssto_hap7	2813948	2813949	rs2844495	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG16N22.5	rs2844495-G	NR	2E-18		0.0261197	[0.02-0.032] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_ssto_hap7	2813948	2813949	rs2844495	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG16N22.5	rs2844495-G	NR	1E-10		0.0210221	[0.015-0.027] unit decrease	Affymetrix [323123] (imputed)	N
606	chr6_ssto_hap7	2813948	2813949	rs2844495	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG16N22.5	rs2844495-G	NR	3E-16		0.024738	[0.019-0.031] unit increase	Affymetrix [321169] (imputed)	N
606	chr6_ssto_hap7	2814018	2814019	rs62397979	31320639	Hillary RF	2019-07-18	Nat Commun	Genome and epigenome wide studies of neurological protein biomarkers in the Lothian Birth Cohort 1936.	Neurological blood protein biomarker levels	750 European ancestry individuals	NA	6p21.33	XXbac-BPG16N22.5	rs62397979-G	0.0469	1E-26	(Alpha-2-MRAP)	1.36939	[1.12-1.62] unit increase	Illumina [8683751] (imputed)	N
606	chr6_ssto_hap7	2814512	2814513	rs17200698	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	Y_RNA, MICB, PPIAP9, XXbac-BPG16N22.5, RPL15P4, MCCD1, ATP6V1G2, ATP6V1G2-DDX39B, NFKBIL1, LST1, NCR3	rs17200698-T	0.0361809	1E-11	(EA, MHC class I polypeptide-related sequence A)	0.813	[0.58-1.04] unit increase	Affymetrix [509946]	N
606	chr6_ssto_hap7	2815329	2815330	rs2395045	28031287	Sasayama D	2016-11-26	Hum Mol Genet	Genome-wide quantitative trait loci mapping of the human cerebrospinal fluid proteome.	Cerebrospinal fluid biomarker levels	133 Japanese ancestry individuals.	NA	6p21.33	NR	rs2395045-?	NR	6E-9	(MHC class I polypeptide-related sequence B)			Illumina [514227]	N
606	chr6_ssto_hap7	2815495	2815496	rs3131631	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cervical cancer	6,563 European ancestry cases, 410,350 European ancestry controls	NA	6p21.33		rs3131631-G	NR	5E-10		1.1332	NR	Affymetrix [7846216] (imputed)	N
606	chr6_ssto_hap7	2815904	2815905	rs2516491	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	XXbac-BPG16N22.5	rs2516491-C	NR	1E-8		0.0197328	[0.013-0.027] unit decrease	Affymetrix [323858] (imputed)	N
606	chr6_ssto_hap7	2816157	2816158	rs3131630	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	XXbac-BPG16N22.5	rs3131630-G	NR	1E-9		0.0197999	[0.013-0.026] unit decrease	Affymetrix [319769] (imputed)	N
606	chr6_ssto_hap7	2816157	2816158	rs3131630	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	XXbac-BPG16N22.5	rs3131630-G	NR	3E-9		0.019409	[0.013-0.026] unit decrease	Affymetrix [319769] (imputed)	N
606	chr6_ssto_hap7	2817208	2817209	rs149066340	30111768	Yao C	2018-08-15	Nat Commun	Genome-wide mapping of plasma protein QTLs identifies putatively causal genes and pathways for cardiovascular disease.	Blood protein levels	6861 European ancestry individuals	4298 European ancestry individuals	6p21.33		rs149066340-C	0.979	1E-36	(C2)	0.92	unit increase	Affymetrix, Illumina [8509364] (imputed)	N
606	chr6_ssto_hap7	2818257	2818258	rs34451538	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs34451538-G	0.971	6E-20				Affymetrix [10369434] (imputed)	N
606	chr6_ssto_hap7	2818257	2818258	rs34451538	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.33	PPIAP9	rs34451538-A	0.028767	2E-9		0.044486254	[0.03-0.059] unit decrease	Affymetrix [93095623] (imputed)	N
606	chr6_ssto_hap7	2818757	2818758	rs3132455	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large HDL	115,082 European ancestry individuals	NA	6p21.33		rs3132455-G	0.653225	3E-10		0.0260764	[0.018-0.034] unit increase	NR [11722792] (imputed)	N
606	chr6_ssto_hap7	2820447	2820448	rs3132454	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PPIAP9	rs3132454-G	NR	2E-8		0.0168062	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_ssto_hap7	2820447	2820448	rs3132454	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PPIAP9	rs3132454-G	NR	4E-12		0.0205728	[0.015-0.026] unit decrease	Affymetrix [321016] (imputed)	N
606	chr6_ssto_hap7	2820447	2820448	rs3132454	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	PPIAP9	rs3132454-G	NR	2E-8		0.0183183	[0.012-0.025] unit decrease	Affymetrix [323123] (imputed)	N
606	chr6_ssto_hap7	2821934	2821935	rs3093992	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	PPIAP9	rs3093992-C	NR	3E-8		0.0191109	[0.012-0.026] unit increase	Affymetrix [323123] (imputed)	N
606	chr6_ssto_hap7	2822819	2822820	rs114060326	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)(bidirectional)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.33		rs114060326-G	NR	3E-10				Affymetrix [7846216] (imputed)	N
606	chr6_ssto_hap7	2823256	2823257	rs3093988	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	RPL15P4	rs3093988-A	NR	8E-12		0.0266126	[0.019-0.034] unit increase	Affymetrix [323123] (imputed)	N
606	chr6_ssto_hap7	2823256	2823257	rs3093988	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	316,772 European ancestry male individuals	NA	6p21.33	NR	rs3093988-A	0.1856	8E-20		0.0203	[0.016-0.025] unit decrease	NR [~ 27400000] (imputed)	N
606	chr6_ssto_hap7	2826423	2826424	rs2734580	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	RPL15P4	rs2734580-T	NR	8E-16		0.0360498	[0.027-0.045] unit decrease	Affymetrix [323123] (imputed)	N
606	chr6_ssto_hap7	2827373	2827374	rs2516482	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.33	MCCD1	rs2516482-G	0.195446	1E-15		0.038059197	[0.029-0.047] unit increase	Affymetrix [93095623] (imputed)	N
606	chr6_ssto_hap7	2827729	2827730	rs3093983	33649182	Penova M	2021-03-01	Proc Natl Acad Sci U S A	Genome wide association study of HTLV-1-associated myelopathy/tropical spastic paraparesis in the Japanese population.	HTLV-1 associated myelopathy	731 Japanese ancestry cases, 846 Japanese ancestry controls	NA	6p21.33		rs3093983-G	0.08	4E-7		1.86	[1.47-2.37]	Illumina [126394]	N
606	chr6_ssto_hap7	2830407	2830408	rs3853601	22197932	Paternoster L	2011-12-25	Nat Genet	Meta-analysis of genome-wide association studies identifies three new risk loci for atopic dermatitis.	Atopic dermatitis	5,606 European ancestry cases, 20,565 European ancestry controls	5,419 European ancestry cases, 19,833 European ancestry controls	6p21.33	BAT1	rs3853601-G	0.12	2E-6		1.13	[1.08-1.19]	Affymetrix, Illumina [~ 2500000] (imputed)	N
606	chr6_ssto_hap7	2834998	2834999	rs114751021	33841421	Li J	2021-03-25	Front Immunol	Variants at the MHC Region Associate With Susceptibility to <i>Clostridioides difficile</i> Infection: A Genome-Wide Association Study Using Comprehensive Electronic Health Records.	Clostridioides difficle infection in antibiotics-users	587 European ancestry cases, 3,166 European ancestry controls	NA	6p21.33	SNORD117	rs114751021-G	0.024	5E-8		2.41	[1.84-3.09]	Illumina [64973696] (imputed)	N
606	chr6_ssto_hap7	2836284	2836285	rs2734583	21912425	Tohkin M	2011-09-13	Pharmacogenomics J	A whole-genome association study of major determinants for allopurinol-related Stevens-Johnson syndrome and toxic epidermal necrolysis in Japanese patients.	Stevens-Johnson syndrome and toxic epidermal necrolysis (SJS-TEN)	14 Japanese ancestry cases, 991 Japanese ancestry controls	NA	6p21.33	PSORS1C1, PSORS1C3, BAT1, HLA-C, MICC, PPIAP9, POLR2LP, CCHCR1, TCF19, HLA-B*5801, HCP5, POU5F1	rs2734583-?	0.0055	2E-8		66.8	[19.8-225.0]	Illumina [890321]	N
606	chr6_ssto_hap7	2836594	2836595	rs9267485	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	6p21.33	DDX39B	rs9267485-G	NR	2E-17		0.0531442	[0.041-0.065] unit decrease	Illumina [13520550] (imputed)	N
606	chr6_ssto_hap7	2837495	2837496	rs2071596	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	6p21.33	DDX39B	rs2071596-A	0.163229	1E-42		0.04289182	[0.037-0.049] unit increase	Affymetrix [93095623] (imputed)	N
606	chr6_ssto_hap7	2837495	2837496	rs2071596	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6p21.33	DDX39B	rs2071596-A	0.163228	9E-50		0.046432465	[0.04-0.053] unit increase	Affymetrix [93095623] (imputed)	N
606	chr6_ssto_hap7	2837495	2837496	rs2071596	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6p21.33	DDX39B	rs2071596-A	0.163185	2E-27		0.03458288	[0.028-0.041] unit decrease	Affymetrix [93095623] (imputed)	N
606	chr6_ssto_hap7	2837495	2837496	rs2071596	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6p21.33	DDX39B	rs2071596-A	0.163195	5E-24		0.030947343	[0.025-0.037] unit increase	Affymetrix [93095623] (imputed)	N
606	chr6_ssto_hap7	2838742	2838743	rs2269476	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	6p21.33	DDX39B, ATP6V1G2-DDX39B	rs2269476-A	0.179	2E-24		0.04806173	[0.039-0.057] unit increase	Affymetrix [~ 2500000] (imputed)	N
606	chr6_ssto_hap7	2839257	2839258	rs34788230	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	6p21.33	DDX39B	rs34788230-G	0.6263	4E-13		0.02679379	[0.02-0.034] unit decrease	Affymetrix [~ 2500000] (imputed)	N
606	chr6_ssto_hap7	2841728	2841729	rs2844509	35023831	Chong M	2022-01-13	Elife	GWAS and ExWAS of blood Mitochondrial DNA copy number identifies 71 loci and highlights a potential causal role in dementia.	Mitochondrial DNA copy number	395,718 British, Irish, Other White, South Asian, African ancestry individuals	NA	6p21.33	NR	rs2844509-G	0.242812	3E-8		0.014	[0.0091-0.0189] unit increase	Affymetrix [23037915] (imputed)	N
606	chr6_ssto_hap7	2844206	2844207	rs2239705	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	6p21.33	NR	rs2239705-?		8E-9	(MICA)			Illumina [NR]	N
606	chr6_ssto_hap7	2845051	2845052	rs9267488	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p21.33	NR	rs9267488-?	NR	3E-6		4.68	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
606	chr6_ssto_hap7	2845051	2845052	rs9267488	26291516	Miller FW	2015-08-20	Genes Immun	Genome-wide association study identifies HLA 8.1 ancestral haplotype alleles as major genetic risk factors for myositis phenotypes.	Myositis	1,710 European ancestry cases, 4,724 European ancestry controls	NA	6p21.33	ATP6V1G2, DDX39B	rs9267488-G	NR	6E-49		2.32	[NR]	Illumina [NR] (imputed)	N
606	chr6_ssto_hap7	2845252	2845253	rs34568880	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	6p21.33	ATP6V1G2	rs34568880-C	0.986687	6E-10		0.0562557	[0.038-0.074] unit decrease	Affymetrix [NR] (imputed)	N
606	chr6_ssto_hap7	2846566	2846567	rs2239708	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	6p21.33	ATP6V1G2, NFKBIL1	rs2239708-T	0.033249	2E-12		0.04410994	[0.032-0.056] unit increase	Affymetrix [93095623] (imputed)	N
606	chr6_ssto_hap7	2846602	2846603	rs2071591	26562150	Seldin MF	2015-10-10	Mol Med	Genome-wide Association Study of Late-Onset Myasthenia Gravis: Confirmation of TNFRSF11A, and Identification of ZBTB10 and Three Distinct HLA Associations.	Late-onset myasthenia gravis	532 European ancestry cases, 2,128 European ancestry controls	NA	6p21.33	MHC_Class III	rs2071591-?	NR	4E-12				Illumina [6175472] (imputed)	N
606	chr6_ssto_hap7	2848706	2848707	rs2523501	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (multivariate analysis)	477,968 European ancestry individuals	NA	6p21.33	NFKBIL1	rs2523501-C	0.152	8E-10		0.036	[0.024-0.048] unit decrease	NR [NR] (imputed)	N
606	chr6_ssto_hap7	2850456	2850457	rs2516383	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	NFKBIL1	rs2516383-C	NR	3E-9		0.0206882	[0.014-0.027] unit increase	Affymetrix [323123] (imputed)	N
606	chr6_ssto_hap7	2851229	2851230	rs6916921	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	LST1, NCR3, ATP6V1G2, TNF, NFKBIL1, LTA, LTB	rs6916921-T	0.1330321	2E-23	(Natural cytotoxicity triggering receptor 3)	0.6188	[0.5-0.74] unit decrease	Affymetrix [509946]	N
606	chr6_ssto_hap7	2851461	2851462	rs34492353	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.33	NR	rs34492353-?	NR	1E-13				Affymetrix [~ 8270000] (imputed)	N
606	chr6_ssto_hap7	2851461	2851462	rs34492353	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.33	NR	rs34492353-?	NR	6E-12				Affymetrix [~ 8270000] (imputed)	N
606	chr6_ssto_hap7	2852399	2852400	rs34268928	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	6p21.33	NFKBIL1	rs34268928-T	0.02077	2E-9		0.04651516	[0.031-0.062] unit decrease	Affymetrix [93095623] (imputed)	N
606	chr6_ssto_hap7	2853472	2853473	rs6929796	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	6p21.33	NFKBIL1	rs6929796-A	0.172	3E-8		0.0092	[0.0059-0.0125] unit decrease	Affymetrix, Illumina [33811881] (imputed)	N
606	chr6_ssto_hap7	2853472	2853473	rs6929796	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	6p21.33	NFKBIL1	rs6929796-A	0.163327	3E-33		0.036523763	[0.031-0.042] unit increase	Affymetrix [93095623] (imputed)	N
606	chr6_ssto_hap7	2853472	2853473	rs6929796	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6p21.33	NFKBIL1	rs6929796-A	0.163358	2E-18		0.030205907	[0.023-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
606	chr6_ssto_hap7	2853472	2853473	rs6929796	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	6p21.33	NFKBIL1	rs6929796-A	0.1634	8E-16		0.03895272	[0.029-0.048] unit increase	Affymetrix [~ 2500000] (imputed)	N
606	chr6_ssto_hap7	2853472	2853473	rs6929796	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	6p21.33	NFKBIL1	rs6929796-A	0.1635	5E-17		0.04056459	[0.031-0.05] unit increase	Affymetrix [~ 2500000] (imputed)	N
606	chr6_ssto_hap7	2853472	2853473	rs6929796	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	6p21.33	NFKBIL1	rs6929796-A	0.1635	7E-11		0.03154443	[0.022-0.041] unit increase	Affymetrix [~ 2500000] (imputed)	N
606	chr6_ssto_hap7	2853472	2853473	rs6929796	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	6p21.33	NFKBIL1	rs6929796-A	0.1635	7E-12		0.03316401	[0.024-0.043] unit increase	Affymetrix [~ 2500000] (imputed)	N
606	chr6_ssto_hap7	2854473	2854474	rs35597084	32592749	Butler-Laporte G	2020-06-24	Clin Microbiol Infect	Elevated body-mass index is associated with an increased risk of infectious disease admissions and mortality: a mendelian randomization study.	Sepsis (90-day mortality)	341 European ancestry cases, 1,696 European ancestry controls	NA	6p21.33	NFKBIL1	rs35597084-C	0.96	4E-8		0.17	[0.11-0.23] unit decrease	NR [NR]	N
606	chr6_ssto_hap7	2855653	2855654	rs2857605	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	6p21.33	NFKBIL1	rs2857605-C	0.21061104132454	6E-14		0.0672	[0.05-0.085] unit decrease	NR [5035015] (imputed)	N
606	chr6_ssto_hap7	2856249	2856250	rs2230365	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.33		rs2230365-C	0.859	7E-16				Affymetrix [10369434] (imputed)	N
606	chr6_ssto_hap7	2856249	2856250	rs2230365	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	NFKBIL1	rs2230365-T	NR	1E-12		0.0288606	[0.021-0.037] unit decrease	Affymetrix [321016] (imputed)	N
606	chr6_ssto_hap7	2856249	2856250	rs2230365	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	NFKBIL1	rs2230365-T	NR	1E-11		0.0299572	[0.021-0.039] unit decrease	Affymetrix [323123] (imputed)	N
606	chr6_ssto_hap7	2856249	2856250	rs2230365	26414677	Day FR	2015-11-01	Nat Genet	Large-scale genomic analyses link reproductive aging to hypothalamic signaling, breast cancer susceptibility and BRCA1-mediated DNA repair.	Menopause (age at onset)	up to 69,626 European ancestry women	NA	6p21.33	MSH5, HLA	rs2230365-C	0.84	8E-10		0.17	[0.11-0.23] years decrease	Affymetrix, Illumina [~ 2600000] (imputed)	N
606	chr6_ssto_hap7	2858931	2858932	rs4947324	33235445	Lee YJ	2020-11-17	Int J Chron Obstruct Pulmon Dis	A Genome-Wide Association Study in Early COPD: Identification of One Major Susceptibility Loci.	Early chronic obstructive pulmonary disease in never smokers	38 Korean ancestry cases, 1,778 Korean ancestry controls	NA	6p21.33	NFKBIL1	rs4947324-?	NR	8E-6	(PS matching analysis)	4.16	NR	Affymetrix [345072]	N
606	chr6_ssto_hap7	2860135	2860136	rs2516392	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.33		rs2516392-G	0.6215470000000001	7E-47		1.0639546	[1.05-1.08]	Affymetrix, Illumina [9851866] (imputed)	N
606	chr6_ssto_hap7	2861474	2861475	rs138885312	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs138885312-?		2E-8		1.8	[1.47-2.20]	Illumina [7645193] (imputed)	N
606	chr6_ssto_hap7	2861611	2861612	rs28732143	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs28732143-A	0.041	1E-64	(MHC class I polypeptide-related sequence B, MICB.5102.55.3)	1.02	[0.9-1.14] unit increase	Affymetrix [10572788] (imputed)	N
606	chr6_ssto_hap7	2863321	2863322	rs111584145	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	6p21.33		rs111584145-G	0.615516	1E-9		0.01450694	[0.0098-0.0192] unit increase	Affymetrix [93095623] (imputed)	N
606	chr6_ssto_hap7	2863321	2863322	rs111584145	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6p21.33		rs111584145-G	0.615476	1E-15		0.022145554	[0.017-0.028] unit increase	Affymetrix [93095623] (imputed)	N
606	chr6_ssto_hap7	2863615	2863616	rs2857709	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	NFKBIL1	rs2857709-A	NR	5E-10		0.0243153	[0.017-0.032] unit decrease	Affymetrix [319769] (imputed)	N
606	chr6_ssto_hap7	2863615	2863616	rs2857709	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	NFKBIL1	rs2857709-A	NR	1E-9		0.0236953	[0.016-0.031] unit decrease	Affymetrix [319769] (imputed)	N
606	chr6_ssto_hap7	2864179	2864180	rs2857602	33106546	Johnson TA	2020-10-26	J Hum Genet	Association of an IGHV3-66 gene variant with Kawasaki disease.	Kawasaki disease	1,276 East Asian ancestry cases, 5,086 East Asian ancestry controls	2,152 East Asian ancestry cases, 2,751 East Asian ancestry controls	6p21.33	LTA	rs2857602-A	NR	3E-15		0.78	[0.73-0.83]	Affymetrix, Illumina [6265045] (imputed)	N
606	chr6_ssto_hap7	2864179	2864180	rs2857602	32805626	Yuan S	2020-08-14	EBioMedicine	Effects of tumour necrosis factor on cardiovascular disease and cancer: A two-sample Mendelian randomization study.	Tumor necrosis factor levels	30,912 European ancestry individuals	NA	6p21.33	LTA	rs2857602-G	0.38	3E-12		0.032	[0.02-0.044] unit increase	NR [NR]	N
606	chr6_ssto_hap7	2865934	2865935	rs190775951	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs190775951-A	0.017	8E-16	(MHC class I polypeptide-related sequence B, MICB.5102.55.3)	0.86	[0.64-1.08] unit increase	Affymetrix [10572788] (imputed)	N
606	chr6_ssto_hap7	2869078	2869079	rs3093539	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	6p21.33	ABHD16A, AIF1, APOM, ATP6V1G2, ATP6V1G2-DDX39B, BAG6, C2, C4A, C4B, C4B_2, C6orf25, C6orf47, C6orf48, CFB, CLIC1, CSNK2B, CYP21A1P, CYP21A2, DDAH2, DDX39B, DXO, EHMT2, GPANK1, HSPA1A, HSPA1B, HSPA1L, LOC102060414, LSM2, LST1, LTA, LTB, LY6G5B, LY6G5C, LY6G6C, LY6G6D, LY6G6E, LY6G6F, MCCD1, MICB, MIR1236, MIR4646, MIR6832, MSH5, MSH5-SAPCD1, NCR3, NELFE, NEU1, NFKBIL1, PRRC2A, SAPCD1, SKIV2L, SLC44A4, SNORA38, SNORD48, SNORD52, SNORD84, SNORD117, STK19, TNF, TNXA, TNXB, VARS, VWA7, ZBTB12	rs3093539-G	0.9841	1E-9		1.189845	[1.14-1.24]	Affymetrix [8274727] (imputed)	N
606	chr6_ssto_hap7	2869297	2869299	rs736160	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	LTA	rs736160-A	NR	1E-13		0.0220518	[0.016-0.028] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_ssto_hap7	2869297	2869299	rs736160	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	LTA	rs736160-A	NR	1E-12		0.0211835	[0.015-0.027] unit increase	Affymetrix [319769] (imputed)	N
606	chr6_ssto_hap7	2869297	2869299	rs736160	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	LTA	rs736160-A	NR	7E-14		0.0222905	[0.016-0.028] unit decrease	Affymetrix [321016] (imputed)	N
606	chr6_ssto_hap7	2869297	2869299	rs736160	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	LTA	rs736160-A	NR	1E-21		0.0310209	[0.025-0.037] unit decrease	Affymetrix [323123] (imputed)	N
606	chr6_ssto_hap7	2869297	2869299	rs736160	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	LTA	rs736160-A	NR	3E-11		0.0199683	[0.014-0.026] unit increase	Affymetrix [321169] (imputed)	N
606	chr6_ssto_hap7	2870567	2870568	rs2844482	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	6p21.33	ABHD16A, AIF1, APOM, ATP6V1G2, ATP6V1G2-DDX39B, BAG6, C6orf25, C6orf47, CSNK2B, DDAH2, DDX39B, GPANK1, LST1, LTA, LTB, LY6G5B, LY6G5C, LY6G6C, LY6G6D, LY6G6E, LY6G6F, MCCD1, MICB, MIR4646, MIR6832, NCR3, NFKBIL1, PRRC2A, SNORA38, SNORD84, SNORD117, TNF	rs2844482-T	0.152664	1E-9		1.0639137	[1.04-1.08]	Affymetrix [8274727] (imputed)	N
606	chr6_ssto_hap7	2870567	2870568	rs2844482	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Perceived unattractiveness to mosquitoes	16,576 European ancestry individuals	NA	6p21.33	intergenic	rs2844482-T	NR	8E-6		0.145906	[0.082-0.21] unit decrease	Illumina [7433384] (imputed)	N
606	chr6_ssto_hap7	2870568	2870569	rs2071590	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	6p21.33	NR	rs2071590-A	0.363817	4E-9		0.042927716	[0.029-0.057] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
606	chr6_ssto_hap7	2870568	2870569	rs2071590	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	6p21.33	Intergenic	rs2071590-A	0.378	1E-8		0.0133	[0.0088-0.0178] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
606	chr6_ssto_hap7	2870941	2870942	rs2239704	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	6p21.33	LTA	rs2239704-A	0.385621	2E-12		0.01774556	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
606	chr6_ssto_hap7	2870941	2870942	rs2239704	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	6p21.33	NR	rs2239704-A	0.384392	1E-14		0.0163675	[0.012-0.021] unit decrease	NR [NR]	N
606	chr6_ssto_hap7	2870941	2870942	rs2239704	28806749	Leo PJ	2017-08-14	PLoS Genet	Defining the genetic susceptibility to cervical neoplasia-A genome-wide association study.	Cervical cancer	2,866 European ancestry cases, 6,481 European ancestry controls	NA	6p21.33	TNF	rs2239704-A	NR	6E-9		1.23	[NR]	Illumina [10863230] (imputed)	N
606	chr6_ssto_hap7	2871356	2871357	rs2229094	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.33		rs2229094-T	0.746	4E-60				Affymetrix [10369434] (imputed)	N
606	chr6_ssto_hap7	2871356	2871357	rs2229094	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	6p21.33		rs2229094-T	0.746	9E-34				Affymetrix [10369434] (imputed)	N
606	chr6_ssto_hap7	2871356	2871357	rs2229094	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.33		rs2229094-T	0.746	3E-36				Affymetrix [10369434] (imputed)	N
606	chr6_ssto_hap7	2871356	2871357	rs2229094	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	6p21.33		rs2229094-T	0.746	2E-47				Affymetrix [10369434] (imputed)	N
606	chr6_ssto_hap7	2871356	2871357	rs2229094	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs2229094-T	0.746	6E-107				Affymetrix [10369434] (imputed)	N
606	chr6_ssto_hap7	2871356	2871357	rs2229094	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p21.33		rs2229094-T	0.746	4E-37				Affymetrix [10369434] (imputed)	N
606	chr6_ssto_hap7	2871356	2871357	rs2229094	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	6p21.33	LTA	rs2229094-C	0.254265	6E-29		0.029798461	[0.025-0.035] unit increase	Affymetrix [93095623] (imputed)	N
606	chr6_ssto_hap7	2871356	2871357	rs2229094	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.33	LTA	rs2229094-C	0.254251	7E-45		0.040826518	[0.035-0.047] unit increase	Affymetrix [93095623] (imputed)	N
606	chr6_ssto_hap7	2871356	2871357	rs2229094	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.33	NR	rs2229094-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
606	chr6_ssto_hap7	2871356	2871357	rs2229094	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	White blood cell count	8,825 African American individuals, 18,251 Hispanic/Latino individuals, 543 Asian ancestry individuals, 606 Native American ancestry individuals, 383 individuals	NA	6p21.33	NR	rs2229094-?	NR	4E-6		0.01256537	[0.0072-0.0179] unit increase	Illumina [30613845] (imputed)	N
606	chr6_ssto_hap7	2871356	2871357	rs2229094	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	6p21.33	LTA	rs2229094-C	0.2537	8E-43		0.0564668	[0.048-0.065] unit increase	Affymetrix [~ 2500000] (imputed)	N
606	chr6_ssto_hap7	2871356	2871357	rs2229094	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	6p21.33	LTA	rs2229094-C	0.2536	4E-15		0.03213321	[0.024-0.04] unit increase	Affymetrix [~ 2500000] (imputed)	N
606	chr6_ssto_hap7	2871356	2871357	rs2229094	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	6p21.33	LTA	rs2229094-C	0.2535	6E-72		0.07418746	[0.066-0.082] unit increase	Affymetrix [~ 2500000] (imputed)	N
606	chr6_ssto_hap7	2871557	2871558	rs2229092	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	LTA	rs2229092-C	NR	5E-9		0.0338477	[0.022-0.045] unit decrease	Affymetrix [321016] (imputed)	N
606	chr6_ssto_hap7	2871557	2871558	rs2229092	32641083	Hillary RF	2020-07-08	Genome Med	Multi-method genome- and epigenome-wide studies of inflammatory protein levels in healthy older adults.	Tumor necrosis factor beta levels	982 Scottish ancestry individuals	NA	6p21.33	NR	rs2229092-C	0.05477	5E-31		1.15038	[0.96-1.35] unit decrease	Illumina [7903493] (imputed)	N
606	chr6_ssto_hap7	2871757	2871758	rs4647195	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.33	NR	rs4647195-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
606	chr6_ssto_hap7	2873108	2873109	rs1799964	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	89,266 East Asian ancestry individuals	NA	6p21.33	NR	rs1799964-T	0.827369	7E-15		0.048854	[0.037-0.061] SD units decrease	Affymetrix, Illumina [16289068] (imputed)	N
606	chr6_ssto_hap7	2873108	2873109	rs1799964	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.33	NR	rs1799964-?	NR	1E-11				Affymetrix [~ 8270000] (imputed)	N
606	chr6_ssto_hap7	2873108	2873109	rs1799964	21102463	Franke A	2010-11-21	Nat Genet	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry trios	6p21.33	HLA-DQA2, LTA, TNF, LST1, LTB	rs1799964-C	0.209	4E-11		1.19	[1.13-1.25]	Affymetrix, Illumina [953241] (imputed)	N
606	chr6_ssto_hap7	2873831	2873832	rs1800629	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	TNF	rs1800629-A	NR	3E-12		0.0274188	[0.02-0.035] unit decrease	Affymetrix [323858] (imputed)	N
606	chr6_ssto_hap7	2873831	2873832	rs1800629	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	6p21.33	TNF	rs1800629-A	0.166	8E-19		0.2902	[0.23-0.35] mmHg increase	Affymetrix [NR] (imputed)	N
606	chr6_ssto_hap7	2874627	2874628	rs1800610	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NCR3	5,364 Icelandic ancestry individuals	NA	6p21.33		rs1800610-A	0.05852	5E-49		0.548141	[0.48-0.62] unit decrease	Illumina [7506463] (imputed)	N
606	chr6_ssto_hap7	2874989	2874990	rs3093662	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	6p21.33	NR	rs3093662-A	0.92	2E-10		0.0223	[0.015-0.029] unit increase	NR [NR]	N
606	chr6_ssto_hap7	2875442	2875443	rs3093664	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MICB	5,339 Icelandic ancestry individuals	NA	6p21.33		rs3093664-G	0.08964	1E-117		0.671593	[0.61-0.73] unit increase	Illumina [7506463] (imputed)	N
606	chr6_ssto_hap7	2875442	2875443	rs3093664	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p21.33	TNF	rs3093664-G	0.048	3E-7		0.13	[0.081-0.179] unit increase	Affymetrix, Illumina [7374092] (imputed)	N
606	chr6_ssto_hap7	2875442	2875443	rs3093664	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs3093664-A	0.916875	8E-64	(MICB, 9328_55_3)	0.73897094	[0.66-0.82] unit decrease	Illumina [> 1000000] (imputed)	N
606	chr6_ssto_hap7	2875442	2875443	rs3093664	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs3093664-A	0.916875	8E-11	(C4A C4B, 2182_54_1)	0.29393905	[0.21-0.38] unit increase	Illumina [> 1000000] (imputed)	N
606	chr6_ssto_hap7	2875442	2875443	rs3093664	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs3093664-A	0.916875	3E-14	(IL36A, 14150_7_3)	0.34182286	[0.25-0.43] unit increase	Illumina [> 1000000] (imputed)	N
606	chr6_ssto_hap7	2875442	2875443	rs3093664	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs3093664-A	0.916875	1E-111	(MICB, 5102_55_3)	0.9721669	[0.89-1.05] unit decrease	Illumina [> 1000000] (imputed)	N
606	chr6_ssto_hap7	2875442	2875443	rs3093664	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs3093664-A	0.916875	1E-10	(USP25, 9215_117_3)	0.28181827	[0.2-0.37] unit decrease	Illumina [> 1000000] (imputed)	N
606	chr6_ssto_hap7	2877650	2877651	rs1800628	27749845	Lesseur C	2016-10-17	Nat Genet	Genome-wide association analyses identify new susceptibility loci for oral cavity and pharyngeal cancer.	Oral cavity cancer	2,717 European ancestry cases, 273 cases, 5,984 European ancestry controls, 601 controls	NA	6p21.33	MICB, AIF1	rs1800628-A	0.07	7E-8		1.3962	NR	Illumina [7574753] (imputed)	N
606	chr6_ssto_hap7	2878314	2878315	rs769178	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs769178-G	0.94078125	8E-31	(NCR3, 3003_29_2)	0.5867702	[0.49-0.69] unit increase	Illumina [> 1000000] (imputed)	N
606	chr6_ssto_hap7	2878314	2878315	rs769178	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs769178-G	0.94078125	4E-26	(ISG15, 14148_2_3)	0.54343	[0.44-0.64] unit increase	Illumina [> 1000000] (imputed)	N
606	chr6_ssto_hap7	2878314	2878315	rs769178	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs769178-G	0.94078125	3E-10	(TNXB, 5698_60_3)	0.32249722	[0.22-0.42] unit increase	Illumina [> 1000000] (imputed)	N
606	chr6_ssto_hap7	2878314	2878315	rs769178	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs769178-G	0.94078125	1E-40	(MICA, 2730_58_2)	0.67921454	[0.58-0.78] unit increase	Illumina [> 1000000] (imputed)	N
606	chr6_ssto_hap7	2878314	2878315	rs769178	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs769178-G	0.94078125	1E-33	(C2, 3186_2_2)	0.63008285	[0.53-0.73] unit increase	Illumina [> 1000000] (imputed)	N
606	chr6_ssto_hap7	2878411	2878412	rs769177	30226566	Yamada Y	2018-09-04	Int J Mol Med	Identification of 13 novel susceptibility loci for early-onset myocardial infarction, hypertension, or chronic kidney disease.	Hypertension	3,444 Japanese ancestry cases, 4,636 Japanese ancestry controls	NA	6p21.33	Intergenic	rs769177-G	0.8280000000000001	1E-6		1.2345679		Illumina [31276]	N
607	chr6_ssto_hap7	2883651	2883652	rs7758790	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.33		rs7758790-T	0.774	1E-27				Affymetrix [10369434] (imputed)	N
607	chr6_ssto_hap7	2885931	2885932	rs2256965	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6p21.33		rs2256965-A	0.4188	2E-13		0.0106	[0.0079-0.0133] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
607	chr6_ssto_hap7	2886193	2886194	rs2256974	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.33	NR	rs2256974-A	0.375	2E-25		0.842	[0.81-0.88]	Illumina [11270530] (imputed)	N
607	chr6_ssto_hap7	2886193	2886194	rs2256974	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Tumor necrosis factor receptor 2 levels	21,758 European ancestry individuals	9,173 individuals	6p21.33		rs2256974-A	0.18	3E-10		0.0632	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
607	chr6_ssto_hap7	2886193	2886194	rs2256974	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p21.33	LST1	rs2256974-A	0.173581	3E-16		0.026160087	[0.02-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
607	chr6_ssto_hap7	2886193	2886194	rs2256974	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	6p21.33	LST1	rs2256974-A	0.17355	5E-37		0.039224777	[0.033-0.045] unit increase	Affymetrix [93095623] (imputed)	N
607	chr6_ssto_hap7	2886281	2886282	rs200801362	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	6p21.33	LST1	rs200801362-T	0.839907	4E-13		0.0188461	[0.014-0.024] unit decrease	Affymetrix [12370749]	N
607	chr6_ssto_hap7	2886958	2886958	rs28986170	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FEV1/FVC)	48,943 European ancestry individuals	57,176 European ancestry individuals, 38,199 individuals.	6p21.33	LST1	rs28986170-?	0.752	2E-10	(conditioned on rs2070600, rs9272528)	0.063	[0.043-0.083] unit increase	Affymetrix [27624732] (imputed)	N
607	chr6_ssto_hap7	2887382	2887383	rs1052248	33768542	Liu Y	2021-03-26	Clin Pharmacol Ther	Class II HLA Variants Associate with Risk of Pegaspargase Hypersensitivity.	Asparaginase hypersensitivity in acute lymphoblastic leukemia	798 Native American individuals	NA	6p21.33	NR	rs1052248-A	NR	4E-7		2.31	[NR]	Illumina [NR] (imputed)	N
607	chr6_ssto_hap7	2887382	2887383	rs1052248	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	6p21.33	Intergenic	rs1052248-A	0.2609	2E-8	(MTAG)	0.0146	[0.0095-0.0197] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
607	chr6_ssto_hap7	2887382	2887383	rs1052248	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p21.33	LST1	rs1052248-A	0.28	3E-17		1.05	[1.04-1.06]	Illumina [at least 560000] (imputed)	N
607	chr6_ssto_hap7	2887510	2887511	rs986475	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NCR3	rs986475-G	0.071	1E-31	(Natural cytotoxicity triggering receptor 3, NCR3.3003.29.2)	0.55	[0.45-0.65] unit decrease	Affymetrix [10572788] (imputed)	N
607	chr6_ssto_hap7	2888292	2888293	rs11575841	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	6p21.33	NR	rs11575841-?	NR	5E-20		9.163	NR z score decrease	Illumina [at least 830937] (imputed)	N
607	chr6_ssto_hap7	2888592	2888593	rs11575839	23028341	Yang X	2012-09-13	PLoS Genet	Genome-wide association study for serum complement C3 and C4 levels in healthy Chinese subjects.	Complement C3 and C4 levels	1,999 Han Chinese ancestry male individuals	1,496 Han Chinese ancestry male individuals	6p21.33	HLA-C	rs11575839-A	0.05	1E-54	(Serum level of C4)	0.23	[0.21-0.25] g/L decrease	Illumina [1940245] (imputed)	N
607	chr6_ssto_hap7	2888975	2888976	rs148533164	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.33		rs148533164-G	0.952	3E-15				Affymetrix [10369434] (imputed)	N
607	chr6_ssto_hap7	2889064	2889065	rs28732145	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p21.33	NR	rs28732145-?	NR	2E-11		0.2045	[0.15-0.26] unit increase	Illumina [at least 560000] (imputed)	N
607	chr6_ssto_hap7	2891470	2891471	rs11575837	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6p21.33		rs11575837-?	NR	5E-8		1.20533	[1.14-1.27]	NR [685523]	N
607	chr6_ssto_hap7	2891470	2891471	rs11575837	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.33	NR	rs11575837-T	0.012	8E-13		0.58141	[0.42-0.74] unit increase	Affymetrix [up to 8900000] (imputed)	N
607	chr6_ssto_hap7	2892149	2892150	rs28732146	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	NCR3	rs28732146-A	NR	1E-11		0.0239586	[0.017-0.031] unit decrease	Affymetrix [321016] (imputed)	N
607	chr6_ssto_hap7	2892149	2892150	rs28732146	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	NCR3	rs28732146-A	NR	2E-17		0.0326707	[0.025-0.04] unit decrease	Affymetrix [323123] (imputed)	N
607	chr6_ssto_hap7	2892311	2892312	rs9357135	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	6p21.33		rs9357135-T	0.046397421	1E-19		0.60996497	[0.48-0.74] unit increase	Illumina [13429980] (imputed)	N
607	chr6_ssto_hap7	2892946	2892947	rs2857599	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	NCR3	rs2857599-A	NR	1E-19		0.0348769	[0.027-0.042] unit decrease	Affymetrix [321016] (imputed)	N
607	chr6_ssto_hap7	2892946	2892947	rs2857599	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	6p21.33	Intergenic	rs2857599-G	NR	3E-8		0.0262207	[0.017-0.036] unit increase	Illumina [13519193] (imputed)	N
607	chr6_ssto_hap7	2892961	2892962	rs536378929	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	6p21.33	NCR3	rs536378929-T	0.9236	9E-26		0.0494	[0.04-0.059] unit decrease	Affymetrix [18391927] (imputed)	N
607	chr6_ssto_hap7	2893411	2893412	rs2515920	30226566	Yamada Y	2018-09-04	Int J Mol Med	Identification of 13 novel susceptibility loci for early-onset myocardial infarction, hypertension, or chronic kidney disease.	Hypertension	3,444 Japanese ancestry cases, 4,636 Japanese ancestry controls	NA	6p21.33	NCR3	rs2515920-T	0.827	5E-7		1.2345679		Illumina [31276]	N
607	chr6_ssto_hap7	2893560	2893561	rs3130632	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	NCR3	rs3130632-T	NR	1E-10		0.022096	[0.015-0.029] unit decrease	Affymetrix [319769] (imputed)	N
607	chr6_ssto_hap7	2893560	2893561	rs3130632	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	NCR3	rs3130632-T	NR	9E-10		0.0210507	[0.014-0.028] unit decrease	Affymetrix [319769] (imputed)	N
607	chr6_ssto_hap7	2893560	2893561	rs3130632	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	NCR3	rs3130632-T	NR	7E-11		0.0226077	[0.016-0.029] unit decrease	Affymetrix [321169] (imputed)	N
607	chr6_ssto_hap7	2893563	2893564	rs34744948	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.33	NR	rs34744948-?	NR	4E-11				Affymetrix [~ 8270000] (imputed)	N
607	chr6_ssto_hap7	2894024	2894025	rs2857598	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	NCR3	rs2857598-A	NR	4E-15		0.0338966	[0.025-0.042] unit increase	Affymetrix [323123] (imputed)	N
607	chr6_ssto_hap7	2894024	2894025	rs2857598	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.33	Intergenic	rs2857598-C	NR	7E-8	(women)	0.0362414	[0.023-0.049] unit decrease	Illumina [13520550] (imputed)	N
607	chr6_ssto_hap7	2894024	2894025	rs2857598	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.33	Intergenic	rs2857598-C	NR	5E-11		0.0308295	[0.022-0.04] unit decrease	Illumina [13520550] (imputed)	N
607	chr6_ssto_hap7	2894024	2894025	rs2857598	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	6p21.33	Intergenic	rs2857598-C	NR	9E-20		0.0496215	[0.039-0.06] unit decrease	Illumina [13520550] (imputed)	N
607	chr6_ssto_hap7	2894036	2894037	rs3132452	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	6p21.33	NR	rs3132452-?	NR	2E-7		0.095	[0.059-0.131] unit increase	Illumina [at least 560000] (imputed)	N
607	chr6_ssto_hap7	2894963	2894964	rs2515919	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	NCR3	rs2515919-G	NR	5E-12		0.020055	[0.014-0.026] unit increase	Affymetrix [319769] (imputed)	N
607	chr6_ssto_hap7	2894963	2894964	rs2515919	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	NCR3	rs2515919-G	NR	2E-8		0.0182636	[0.012-0.025] unit increase	Affymetrix [323858] (imputed)	N
607	chr6_ssto_hap7	2894963	2894964	rs2515919	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	NCR3	rs2515919-G	NR	7E-11		0.0189369	[0.013-0.025] unit increase	Affymetrix [319769] (imputed)	N
607	chr6_ssto_hap7	2894963	2894964	rs2515919	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	NCR3	rs2515919-G	NR	2E-10		0.0184288	[0.013-0.024] unit decrease	Affymetrix [321016] (imputed)	N
607	chr6_ssto_hap7	2894963	2894964	rs2515919	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	NCR3	rs2515919-G	NR	1E-28		0.0351117	[0.029-0.041] unit decrease	Affymetrix [323123] (imputed)	N
607	chr6_ssto_hap7	2894963	2894964	rs2515919	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	NCR3	rs2515919-G	NR	8E-13		0.0210432	[0.015-0.027] unit increase	Affymetrix [321169] (imputed)	N
607	chr6_ssto_hap7	2894963	2894964	rs2515919	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	6p21.33	Intergenic	rs2515919-A	0.6258	1E-10	(MTAG)	0.0119	[0.0082-0.0156] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
607	chr6_ssto_hap7	2894963	2894964	rs2515919	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	6p21.33	Intergenic	rs2515919-A	0.6255	3E-16	(MTAG)	0.0139	[0.011-0.017] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
607	chr6_ssto_hap7	2894963	2894964	rs2515919	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6p21.33	Intergenic	rs2515919-A	0.63	3E-16	(MTAG)	0.0111	[0.0084-0.0138] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
607	chr6_ssto_hap7	2895617	2895618	rs2844480	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p21.33	NR	rs2844480-?	NR	2E-18		0.0887	[0.069-0.108] unit increase	Illumina [at least 560000] (imputed)	N
607	chr6_ssto_hap7	2896106	2896107	rs150379130	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	NCR3	rs150379130-T	NR	4E-9		0.0270941	[0.018-0.036] unit decrease	Affymetrix [323123] (imputed)	N
607	chr6_ssto_hap7	2896333	2896334	rs111728624	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	NCR3	rs111728624-C	NR	3E-11		0.0281508	[0.02-0.036] unit increase	Affymetrix [319769] (imputed)	N
607	chr6_ssto_hap7	2896333	2896334	rs111728624	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.33	NCR3	rs111728624-C	NR	2E-8		0.0241088	[0.016-0.032] unit increase	Affymetrix [321114] (imputed)	N
607	chr6_ssto_hap7	2896333	2896334	rs111728624	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	NCR3	rs111728624-C	NR	1E-11		0.0289838	[0.021-0.037] unit increase	Affymetrix [321169] (imputed)	N
607	chr6_ssto_hap7	2896964	2896965	rs3130631	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p21.33	NR	rs3130631-?	NR	2E-9		0.0861	[0.058-0.115] unit decrease	Illumina [at least 560000] (imputed)	N
607	chr6_ssto_hap7	2897636	2897637	rs17200816	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	NCR3	rs17200816-T	NR	2E-11		0.0283425	[0.02-0.037] unit increase	Affymetrix [319769] (imputed)	N
607	chr6_ssto_hap7	2898218	2898219	rs2857596	32752121	Nedoszytko B	2020-07-31	Int J Mol Sci	Results from a Genome-Wide Association Study (GWAS) in Mastocytosis Reveal New Gene Polymorphisms Associated with WHO Subgroups.	Systemic mastocytosis	93 European ancestry cases, 5,606 European ancestry controls	NA	6p21.33	NRC3	rs2857596-C	0.2394	2E-10		2.582	[2.28-2.88]	Illumina [281811]	N
607	chr6_ssto_hap7	2899265	2899266	rs2857595	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	NCR3	rs2857595-A	NR	3E-11		0.0254138	[0.018-0.033] unit decrease	Affymetrix [127266] (imputed)	N
607	chr6_ssto_hap7	2899265	2899266	rs2857595	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FEV1/FVC)	48,943 European ancestry individuals	57,176 European ancestry individuals, 38,199 individuals.	6p21.33	NCR3	rs2857595-A	0.213	4E-9		0.048	[0.032-0.064] unit decrease	Affymetrix [27624732] (imputed)	N
607	chr6_ssto_hap7	2899265	2899266	rs2857595	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FEV1)	48,943 European ancestry individuals.	57,176 European ancestry individuals, 38,199 individuals.	6p21.33	NCR3	rs2857595-A	0.21	2E-6		0.039	[0.023-0.055] unit decrease	Affymetrix [up to 27624732] (imputed)	N
607	chr6_ssto_hap7	2899265	2899266	rs2857595	25936594	Tomer Y	2015-04-27	J Autoimmun	Genome wide identification of new genes and pathways in patients with both autoimmune thyroiditis and type 1 diabetes.	Type 1 diabetes and autoimmune thyroid diseases	346 European ancestry cases, 727 European ancestry controls	185 European ancestry cases, 340 European ancestry controls	6p21.33	NFKBIL1, LTA, NCR3	rs2857595-T	NR	2E-23		2.3765		Illumina [514008]	N
607	chr6_ssto_hap7	2899265	2899266	rs2857595	25194280	Wei Q	2014-09-07	Nat Genet	Genome-wide association study identifies three susceptibility loci for laryngeal squamous cell carcinoma in the Chinese population.	Laryngeal squamous cell carcinoma	993 Chinese ancestry cases, 1,995 Chinese ancestry controls	2,398 Chinese ancestry cases, 2,804 Chinese ancestry controls	6p21.33	AIF1, HLA	rs2857595-?	0.50	2E-15		1.3	[1.22-1.39]	Affymetrix [662108]	N
607	chr6_ssto_hap7	2899265	2899266	rs2857595	23284291	Hancock DB	2012-12-20	PLoS Genet	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (smoking interaction)	50,047 European ancestry individuals	NA	6p21.33	NCR3	rs2857595-?	NR	8E-8	(FEV1/FVC, Ever-smoking)			NR [~ 2500000] (imputed)	N
607	chr6_ssto_hap7	2899265	2899266	rs2857595	21946350	Soler Artigas M	2011-09-25	Nat Genet	Genome-wide association and large-scale follow up identifies 16 new loci influencing lung function.	Pulmonary function	48,201 European ancestry individuals	46,411 European ancestry individuals	6p21.33	NCR3	rs2857595-G	0.81	2E-10	(FEV1/FVC)	0.037	[0.025-0.049] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
607	chr6_ssto_hap7	2899265	2899266	rs2857595	21946350	Soler Artigas M	2011-09-25	Nat Genet	Genome-wide association and large-scale follow up identifies 16 new loci influencing lung function.	Pulmonary function	48,201 European ancestry individuals	46,411 European ancestry individuals	6p21.33	NCR3	rs2857595-G	0.81	1E-6	(FEV1)	0.025	[0.02-0.04] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
607	chr6_ssto_hap7	2900315	2900316	rs17207190	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Strep throat	52,487 European ancestry cases, 22,017 European ancestry controls	NA	6p21.33	NR	rs17207190-?	NR	8E-8		0.0766	[0.049-0.105] unit decrease	Illumina [at least 560000] (imputed)	N
607	chr6_ssto_hap7	2900499	2900500	rs2507960	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Diastolic blood pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	6p21.33	HLA	rs2507960-A	0.139916952	3E-6		0.1878	[0.11-0.27] unit increase	Affymetrix [~ 9800000] (imputed)	N
607	chr6_ssto_hap7	2900696	2900697	rs9267516	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	6p21.33		rs9267516-T	0.364098	1E-16		0.0286201	[0.024-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
607	chr6_ssto_hap7	2903127	2903128	rs2736186	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	Intergenic	rs2736186-A	0.03768844	1E-29	(EA, Neutrophil collagenase)	1.233	[1.03-1.44] unit increase	Affymetrix [509946]	N
607	chr6_ssto_hap7	2903439	2903440	rs2857594	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	Triglyceride levels	291,107 British ancestry individuals	NA	6p21.33	TBC1D22B	rs2857594-C	0.148615	4E-11		0.01965	[0.014-0.025] unit decrease	Affymetrix [9463307] (imputed)	N
607	chr6_ssto_hap7	2903439	2903440	rs2857594	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	Systolic blood pressure	291,107 British ancestry individuals	NA	6p21.33	TBC1D22B	rs2857594-C	0.148615	1E-7		0.36076	[0.23-0.49] unit decrease	Affymetrix [9463307] (imputed)	N
607	chr6_ssto_hap7	2903459	2903460	rs41291790	35232999	Garcia-Etxebarria K	2022-03-01	Sci Rep	Local genetic variation of inflammatory bowel disease in Basque population and its effect in risk prediction.	Ulcerative colitis	208 European ancestry cases, 935 European ancestry controls	NA	6p21.33		rs41291790-A	0.022	3E-8		5.3		Illumina [5409651] (imputed)	N
607	chr6_ssto_hap7	2903459	2903460	rs41291790	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	334,944 European ancestry, NR ancestry individuals	NA	6p21.33		rs41291790-?	NR	5E-8				Affymetrix [NR] (imputed)	N
607	chr6_ssto_hap7	2903751	2903752	rs2844479	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	UQCRHP1	rs2844479-C	NR	4E-14		0.0227975	[0.017-0.029] unit increase	Affymetrix [319769] (imputed)	N
607	chr6_ssto_hap7	2903751	2903752	rs2844479	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	UQCRHP1	rs2844479-C	NR	6E-13		0.02173	[0.016-0.028] unit increase	Affymetrix [319769] (imputed)	N
607	chr6_ssto_hap7	2903751	2903752	rs2844479	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	UQCRHP1	rs2844479-C	NR	8E-11		0.0195735	[0.014-0.025] unit decrease	Affymetrix [321016] (imputed)	N
607	chr6_ssto_hap7	2903751	2903752	rs2844479	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	UQCRHP1	rs2844479-C	NR	1E-14		0.0236304	[0.018-0.03] unit increase	Affymetrix [321169] (imputed)	N
607	chr6_ssto_hap7	2903751	2903752	rs2844479	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	6p21.33		rs2844479-C	0.326375	4E-26		0.027727867	[0.023-0.033] unit increase	Affymetrix [93095623] (imputed)	N
607	chr6_ssto_hap7	2903751	2903752	rs2844479	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	6p21.33	AIF1	rs2844479-A	0.66	3E-10		1.14	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
607	chr6_ssto_hap7	2903751	2903752	rs2844479	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs2844479-C	0.393698650943396	4E-6	(IGP60)	0.151	[0.087-0.215] unit increase	Illumina [~ 2500000] (imputed)	N
607	chr6_ssto_hap7	2903751	2903752	rs2844479	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs2844479-C	0.393631380483438	4E-6	(IGP6)	0.1506	[0.086-0.215] unit decrease	Illumina [~ 2500000] (imputed)	N
607	chr6_ssto_hap7	2903751	2903752	rs2844479	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs2844479-C	0.393516127507802	9E-6	(IGP61)	0.1445	[0.081-0.208] unit increase	Illumina [~ 2500000] (imputed)	N
607	chr6_ssto_hap7	2903751	2903752	rs2844479	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs2844479-C	0.393054780607685	7E-6	(IGP58)	0.1476	[0.083-0.212] unit increase	Illumina [~ 2500000] (imputed)	N
607	chr6_ssto_hap7	2903751	2903752	rs2844479	19079260	Thorleifsson G	2008-12-14	Nat Genet	Genome-wide association yields new sequence variants at seven loci that associate with measures of obesity.	Weight	72,598 European ancestry individuals, 1,160 African American individuals	Up to 11,036 European ancestry individuals, 32,615 individuals	6p21.33	AIF1, NCR3	rs2844479-T	0.68	2E-8		3.58	[2.33-4.83] percentage SD increase	Illumina [305846]	N
607	chr6_ssto_hap7	2903905	2903906	rs9267517	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	IgD on unswitched memory B cell	3,636 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs9267517-A	0.2447	1E-13		0.2671	[0.2-0.34] unit decrease	Illumina [18230756] (imputed)	N
607	chr6_ssto_hap7	2904372	2904373	rs144360625	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	6p21.33		rs144360625-C	0.125812	9E-19		0.029980848	[0.023-0.037] unit increase	Affymetrix [93095623] (imputed)	N
607	chr6_ssto_hap7	2904372	2904373	rs144360625	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	6p21.33	NR	rs144360625-?	NR	3E-11	(MIC-A)	0.57967	[0.41-0.75] unit decrease	Illumina [11901634] (imputed)	N
607	chr6_ssto_hap7	2904952	2904952	rs144831544	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	UQCRHP1	rs144831544-AAATTAGC	NR	7E-14		0.026213	[0.019-0.033] unit increase	Affymetrix [319769] (imputed)	N
607	chr6_ssto_hap7	2904952	2904952	rs144831544	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	UQCRHP1	rs144831544-AAATTAGC	NR	4E-13		0.0254281	[0.019-0.032] unit increase	Affymetrix [319769] (imputed)	N
607	chr6_ssto_hap7	2904952	2904952	rs144831544	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	UQCRHP1	rs144831544-AAATTAGC	NR	9E-16		0.0284632	[0.022-0.035] unit increase	Affymetrix [321169] (imputed)	N
607	chr6_ssto_hap7	2905334	2905335	rs28895016	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	6p21.33	NCR3, AIF1	rs28895016-C	0.91	9E-16		1.097	[1.07-1.12]	Affymetrix, Illumina [8307659] (imputed)	N
607	chr6_ssto_hap7	2905709	2905710	rs28366149	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	UQCRHP1	rs28366149-A	NR	4E-9		0.0225023	[0.015-0.03] unit decrease	Affymetrix [323123] (imputed)	N
607	chr6_ssto_hap7	2905882	2905883	rs28474889	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	6p21.33	UQCRHP1	rs28474889-T	0.200504	2E-19		0.025810601	[0.02-0.031] unit increase	Affymetrix [93095623] (imputed)	N
607	chr6_ssto_hap7	2905882	2905883	rs28474889	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6p21.33	UQCRHP1	rs28474889-T	0.200511	2E-24		0.02926071	[0.024-0.035] unit increase	Affymetrix [93095623] (imputed)	N
607	chr6_ssto_hap7	2905882	2905883	rs28474889	29773799	Horikoshi M	2018-05-17	Nat Commun	Elucidating the genetic architecture of reproductive ageing in the Japanese population.	Menopause (age at onset)	43,861 Japanese ancestry women	32,545 European ancestry women	6p21.33	MSH5 / HLA	rs28474889-C	0.73	5E-16	(japanese)	0.24	[0.18-0.3] year increase	Illumina [at least 532488] (imputed)	N
607	chr6_ssto_hap7	2906085	2906086	rs9348876	22936669	Julia A	2012-08-30	Gut	A genome-wide association study on a southern European population identifies a new Crohn's disease susceptibility locus at RBX1-EP300.	Crohn's disease	1,277 European ancestry cases, 1,488 European ancestry controls	1,365 European ancestry cases, 1,396 European ancestry controls	6p21.33	AIF1	rs9348876-T	0.06	3E-6		1.41	[1.22-1.63]	Illumina [508934]	N
607	chr6_ssto_hap7	2906434	2906435	rs28732148	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	6p21.33	AIF1	rs28732148-C	0.932302	2E-9		0.0218984	[0.015-0.029] unit decrease	NR [13737936] (imputed)	N
607	chr6_ssto_hap7	2907908	2907909	rs3130060	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	UQCRHP1	rs3130060-T	NR	8E-10		0.0239184	[0.016-0.032] unit decrease	Affymetrix [323858] (imputed)	N
607	chr6_ssto_hap7	2907908	2907909	rs3130060	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	UQCRHP1	rs3130060-T	NR	2E-8		0.0217476	[0.014-0.029] unit decrease	Affymetrix [127266] (imputed)	N
607	chr6_ssto_hap7	2907908	2907909	rs3130060	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	UQCRHP1	rs3130060-T	NR	6E-9		0.0221795	[0.015-0.03] unit increase	Affymetrix [323123] (imputed)	N
607	chr6_ssto_hap7	2908092	2908093	rs2857702	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	UQCRHP1	rs2857702-C	NR	7E-9		0.0219268	[0.015-0.029] unit decrease	Affymetrix [323123] (imputed)	N
607	chr6_ssto_hap7	2911314	2911315	rs3993747	31263887	Adams MJ	2019-07-01	Int J Epidemiol	Factors associated with sharing e-mail information and mental health survey participation in large population cohorts.	Mental health study participation (completed survey)	122,647 British ancestry cases, 248,781 British ancestry controls	NA	6p21.33	NR	rs3993747-A	0.65	1E-9		1.0319917	[1.02-1.04]	NR [16367095] (imputed)	N
607	chr6_ssto_hap7	2911346	2911347	rs2471960	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Non-Hodgkin's lymphoma	2,400 European ancestry cases, 410,350 European ancestry controls	NA	6p21.33		rs2471960-A	NR	1E-11		1.2300123	NR	Affymetrix [7846216] (imputed)	N
607	chr6_ssto_hap7	2911844	2911845	rs542914466	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.33	NR	rs542914466-A	0.009	2E-37	(conditional)	18.321	[17.88-18.77]	Illumina [11270530] (imputed)	N
607	chr6_ssto_hap7	2912831	2912832	rs3132451	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	AIF1	rs3132451-C	NR	3E-14		0.0290333	[0.022-0.037] unit decrease	Affymetrix [323858] (imputed)	N
607	chr6_ssto_hap7	2912831	2912832	rs3132451	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	AIF1	rs3132451-C	NR	1E-12		0.0272438	[0.02-0.035] unit decrease	Affymetrix [127266] (imputed)	N
607	chr6_ssto_hap7	2912831	2912832	rs3132451	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	AIF1	rs3132451-C	NR	3E-15		0.029579	[0.022-0.037] unit increase	Affymetrix [323123] (imputed)	N
607	chr6_ssto_hap7	2912831	2912832	rs3132451	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	AIF1	rs3132451-C	0.217	7E-56	(cAMP-specific 3',5'-cyclic phosphodiesterase 4D, PDE4D.5255.22.3)	0.46	[0.4-0.52] unit decrease	Affymetrix [10572788] (imputed)	N
607	chr6_ssto_hap7	2912831	2912832	rs3132451	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	AIF1	rs3132451-C	0.217	4E-34	(T-cell surface protein tactile, CD96.9735.44.3)	0.36	[0.3-0.42] unit decrease	Affymetrix [10572788] (imputed)	N
607	chr6_ssto_hap7	2912831	2912832	rs3132451	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	AIF1	rs3132451-C	0.217	2E-55	(Glutamate receptor 4, GRIA4.10760.107.3)	0.46	[0.4-0.52] unit decrease	Affymetrix [10572788] (imputed)	N
607	chr6_ssto_hap7	2912831	2912832	rs3132451	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	6p21.33	NCR3, AIF1	rs3132451-G	NR	3E-12		0.171592	[0.12-0.22] unit decrease	Illumina [at least 950000] (imputed)	N
607	chr6_ssto_hap7	2913961	2913962	rs2844475	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	AIF1	rs2844475-A	NR	2E-8		0.0183217	[0.012-0.025] unit increase	Affymetrix [323858] (imputed)	N
607	chr6_ssto_hap7	2913961	2913962	rs2844475	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	AIF1	rs2844475-A	NR	5E-13		0.0229918	[0.017-0.029] unit decrease	Affymetrix [323123] (imputed)	N
607	chr6_ssto_hap7	2914118	2914119	rs2736182	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	6p21.33	AIF1	rs2736182-A	0.019095	6E-9		0.0493347	[0.033-0.066] unit increase	Affymetrix [93095623] (imputed)	N
607	chr6_ssto_hap7	2914118	2914119	rs2736182	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	6p21.33	AIF1	rs2736182-A	0.019095	2E-13		0.06039303	[0.044-0.077] unit decrease	Affymetrix [93095623] (imputed)	N
607	chr6_ssto_hap7	2914647	2914648	rs34451818	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.33		rs34451818-G	NR	1E-9		1.2642225	[1.17-1.36]	Affymetrix [7846216] (imputed)	N
607	chr6_ssto_hap7	2916551	2916552	rs144309021	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	6p21.33	PRRC2A	rs144309021-T	0.1234	1E-9	(S1P d16:1)	0.1184	[0.08-0.156] unit decrease	Illumina [~ 47000000] (imputed)	N
607	chr6_ssto_hap7	2917268	2917269	rs2857695	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	AIF1	rs2857695-C	NR	2E-15		0.0312768	[0.024-0.039] unit increase	Affymetrix [323123] (imputed)	N
607	chr6_ssto_hap7	2917846	2917847	rs140054334	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.33	NR	rs140054334-T	0.017	7E-11		0.45969	[0.32-0.6] unit increase	Affymetrix [up to 8900000] (imputed)	N
607	chr6_ssto_hap7	2917846	2917847	rs140054334	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.33	NR	rs140054334-T	0.017	3E-6	(men)	0.387194	[0.23-0.55] unit increase	Affymetrix [up to 8900000] (imputed)	N
607	chr6_ssto_hap7	2918362	2918363	rs2736176	32109421	Li C	2020-02-20	Am J Hum Genet	Genome-Wide Association Analysis in Humans Links Nucleotide Metabolism to Leukocyte Telomere Length.	Leukocyte telomere length	78,592 European ancestry individuals	NA	6p21.33	PRRC2A	rs2736176-C	0.31	4E-10		0.035	[0.023-0.047] unit increase	Affymetrix, Illumina, Perlegen [up to 30071938] (imputed)	N
607	chr6_ssto_hap7	2918671	2918672	rs2857694	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PRRC2A	rs2857694-T	NR	2E-9		0.0174435	[0.012-0.023] unit increase	Affymetrix [319769] (imputed)	N
607	chr6_ssto_hap7	2918671	2918672	rs2857694	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	PRRC2A	rs2857694-T	NR	4E-8		0.0161057	[0.01-0.022] unit increase	Affymetrix [319769] (imputed)	N
607	chr6_ssto_hap7	2918822	2918826	rs145554793	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	6p21.33	PRRC2A, SNORA38	rs145554793-C	0.364548	5E-15		0.020902038	[0.016-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
607	chr6_ssto_hap7	2919186	2919187	rs2857693	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	PRRC2A	rs2857693-T	NR	2E-11		0.019953	[0.014-0.026] unit increase	Affymetrix [321169] (imputed)	N
607	chr6_ssto_hap7	2919186	2919187	rs2857693	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	6p21.33	BAT2	rs2857693-T	0.38	3E-29		0.034	[0.028-0.04] unit decrease	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
607	chr6_ssto_hap7	2920063	2920064	rs3115665	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic glomerulonephritis	566 European ancestry cases, 475,255 European ancestry controls, 210 East Asian ancestry cases, 174,345 East Asian ancestry controls	NA	6p21.33		rs3115665-G	NR	3E-8		0.929	[0.6-1.26] unit increase	Affymetrix, Illumina [25844108] (imputed)	N
607	chr6_ssto_hap7	2920475	2920476	rs2844472	33563987	Tyrrell J	2021-02-09	Nat Commun	Genetic predictors of participation in optional components of UK Biobank.	Acceptance of an invitation to participate in a mental health questionnaire	146,074 European ancestry cases, 148,713 European ancestry controls	NA	6p21.33	NR	rs2844472-A	0.65	2E-9		1.03	[1.02, 1.04]	Affymetrix [39302896] (imputed)	N
607	chr6_ssto_hap7	2920534	2920535	rs2736173	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p21.33	BAT2	rs2736173-A	0.03	2E-7	(EA)	3.58	[2.14-5.98]	Illumina [up to 547389]	N
607	chr6_ssto_hap7	2921697	2921698	rs2736172	24132900	Kanazawa T	2013-10-01	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of atypical psychosis.	Psychosis (atypical)	47 Japanese ancestry cases, 882 Japanese ancestry controls	NA	6p21.33	TNF, MICB	rs2736172-?		4E-6				Affymetrix [545513]	N
607	chr6_ssto_hap7	2922718	2922719	rs2260051	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		6p21.33	PRRC2A	rs2260051-A	0.438452	2E-17		0.011743	[0.009-0.0144] unit decrease	Affymetrix [12370749]	N
607	chr6_ssto_hap7	2922718	2922719	rs2260051	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	Waist circumference	291,107 British ancestry individuals	NA	6p21.33	PRRC2A	rs2260051-A	0.44273999	2E-13		0.230643	[0.17-0.29] unit decrease	Affymetrix [9463307] (imputed)	N
607	chr6_ssto_hap7	2922718	2922719	rs2260051	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	6p21.33	NR	rs2260051-A	0.4422	8E-15		0.019329904	[0.014-0.024] unit decrease	Affymetrix [10549349] (imputed)	N
607	chr6_ssto_hap7	2922718	2922719	rs2260051	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	6p21.33	PRRC2A	rs2260051-A	0.4425	1E-15		0.002	[0.0014-0.0026] unit increase	Affymetrix [15275733] (imputed)	N
607	chr6_ssto_hap7	2922718	2922719	rs2260051	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	223,215 British ancestry individuals	111,610 British ancestry individuals	6p21.33	PRRC2A	rs2260051-T	0.56	7E-12		0.002	[0.0014-0.0026] unit decrease	Affymetrix [15275733] (imputed)	N
607	chr6_ssto_hap7	2923620	2923621	rs3135044	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	6p21.33	NR	rs3135044-?		9E-11		0.0145909	[0.01-0.019] unit decrease	Affymetrix [19400418] (imputed)	N
607	chr6_ssto_hap7	2926287	2926288	rs2736171	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PRRC2A	rs2736171-G	NR	3E-9		0.0173452	[0.012-0.023] unit decrease	Affymetrix [321016] (imputed)	N
607	chr6_ssto_hap7	2926682	2926683	rs1046080	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Sex hormone-binding globulin levels	389,354 European ancestry individuals	NA	6p21.33		rs1046080-A	0.72	4E-8		0.013	nmol/L decrease	NR [NR] (imputed)	N
607	chr6_ssto_hap7	2926682	2926683	rs1046080	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	6p21.33		rs1046080-A	0.72	2E-18				NR [NR] (imputed)	N
607	chr6_ssto_hap7	2926682	2926683	rs1046080	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	6p21.33		rs1046080-A	0.72	4E-22		0.016	% increase	NR [NR] (imputed)	N
607	chr6_ssto_hap7	2926682	2926683	rs1046080	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Aspartate aminotransferase levels	424,778 European ancestry individuals	NA	6p21.33		rs1046080-A	0.72	2E-7		0.011	U/L decrease	NR [NR] (imputed)	N
607	chr6_ssto_hap7	2926682	2926683	rs1046080	32534018	Liu X	2020-06-10	Brain Behav Immun	Genetic factors underlying the bidirectional relationship between autoimmune and mental disorders - findings from a Danish population-based study.	Autoimmune traits	1,383 Danish ancestry cases, 62,656 Danish ancestry controls	NA	6p21.33	NR	rs1046080-C	0.26	2E-12		0.72	[0.65-0.79]	NR [7721839] (imputed)	N
607	chr6_ssto_hap7	2926682	2926683	rs1046080	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	6p21.33	NR	rs1046080-?	NR	5E-8		0.12785	[0.082-0.174] unit increase	Affymetrix [7794483] (imputed)	N
607	chr6_ssto_hap7	2926682	2926683	rs1046080	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	6p21.33	NR	rs1046080-?	NR	3E-6	(male)	0.13448	[0.078-0.191] unit increase	Affymetrix [7794483] (imputed)	N
607	chr6_ssto_hap7	2926682	2926683	rs1046080	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite ratios	Up to 5,591 European ancestry individuals	Up to 1,767 European ancestry individuals	6p21.33	PRRC2A	rs1046080-A	0.74	1E-14	(X-11444/X-11470)	0.027	[0.019-0.035] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
607	chr6_ssto_hap7	2926938	2926939	rs3132450	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PRRC2A	rs3132450-G	NR	7E-11		0.0268129	[0.019-0.035] unit decrease	Affymetrix [319769] (imputed)	N
607	chr6_ssto_hap7	2926938	2926939	rs3132450	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	PRRC2A	rs3132450-G	NR	8E-12		0.0285009	[0.02-0.037] unit decrease	Affymetrix [321169] (imputed)	N
607	chr6_ssto_hap7	2928500	2928501	rs3130623	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	6p21.33		rs3130623-T	NR	8E-24		0.0277	[0.022-0.033] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
607	chr6_ssto_hap7	2928508	2928509	rs2736163	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein APOM	5,364 Icelandic ancestry individuals	NA	6p21.33		rs2736163-T	0.03403	2E-15		0.413547	[0.31-0.52] unit decrease	Illumina [7506463] (imputed)	N
607	chr6_ssto_hap7	2928553	2928554	rs2242660	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cervical cancer	6,563 European ancestry cases, 410,350 European ancestry controls	NA	6p21.33		rs2242660-G	NR	2E-7		1.1015	NR	Affymetrix [7846216] (imputed)	N
607	chr6_ssto_hap7	2932644	2932645	rs3115663	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.33	BAT2	rs3115663-G	0.1812	7E-57		3.04	[NR]	Illumina [242824]	N
607	chr6_ssto_hap7	2933768	2933769	rs1046089	23894747	Aberg KA	2013-02-01	JAMA Psychiatry	A comprehensive family-based replication study of schizophrenia genes.	Schizophrenia	11,185 European ancestry cases, 10,768 European ancestry controls	1,262 African American ancestry individuals, 2,740 European ancestry individuals, 2,296 Asian ancestry individuals	6p21.33	PRRC2A, BAG6	rs1046089-G	0.34	4E-6	(EA)	1.3	[NR]	NR [1085772] (imputed)	N
607	chr6_ssto_hap7	2933768	2933769	rs1046089	23307926	Perry JR	2013-01-09	Hum Mol Genet	A genome-wide association study of early menopause and the combined impact of identified variants.	Menopause (age at onset)	3,493 European ancestry cases, 13,598 European ancestry controls	3,412 European ancestry cases, 4,928 European ancestry controls	6p21.33	NR	rs1046089-A	0.3492	4E-11		0.1919	[0.13-0.25] years increase	NR [NR]	N
607	chr6_ssto_hap7	2933768	2933769	rs1046089	22267201	Stolk L	2012-01-22	Nat Genet	Meta-analyses identify 13 loci associated with age at menopause and highlight DNA repair and immune pathways.	Menopause (age at onset)	38,968 European ancestry female individuals	Up to 14,435 European ancestry female individuals	6p21.33	PRRC2A	rs1046089-A	0.353	2E-16		0.213	[0.16-0.26] years decrease	Affymetrix, Illumina [2551160] (imputed)	N
607	chr6_ssto_hap7	2934392	2934393	rs2261033	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PRRC2A	rs2261033-G	NR	3E-12		0.0196963	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
607	chr6_ssto_hap7	2934392	2934393	rs2261033	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	PRRC2A	rs2261033-G	NR	2E-12		0.0222106	[0.016-0.028] unit increase	Affymetrix [323858] (imputed)	N
607	chr6_ssto_hap7	2934392	2934393	rs2261033	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	PRRC2A	rs2261033-G	NR	5E-11		0.0185935	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
607	chr6_ssto_hap7	2934392	2934393	rs2261033	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	PRRC2A	rs2261033-G	NR	2E-10		0.0200207	[0.014-0.026] unit increase	Affymetrix [127266] (imputed)	N
607	chr6_ssto_hap7	2934392	2934393	rs2261033	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	PRRC2A	rs2261033-G	NR	2E-11		0.0189094	[0.013-0.024] unit decrease	Affymetrix [321016] (imputed)	N
607	chr6_ssto_hap7	2934392	2934393	rs2261033	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	PRRC2A	rs2261033-G	NR	3E-24		0.0314057	[0.025-0.037] unit decrease	Affymetrix [323123] (imputed)	N
607	chr6_ssto_hap7	2934392	2934393	rs2261033	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	PRRC2A	rs2261033-G	NR	2E-12		0.0202126	[0.015-0.026] unit increase	Affymetrix [321169] (imputed)	N
607	chr6_ssto_hap7	2934392	2934393	rs2261033	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.33	PRRC2A	rs2261033-A	0.5235	9E-11		0.0461	[0.032-0.06] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
607	chr6_ssto_hap7	2935156	2935157	rs35502919	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	PRRC2A	rs35502919-A	NR	5E-11		0.0387702	[0.027-0.05] unit increase	Affymetrix [321169] (imputed)	N
607	chr6_ssto_hap7	2935156	2935157	rs35502919	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	6p21.33	NR	rs35502919-?		9E-14	(AGER)	0.631	[NR] unit decrease	Illumina [NR]	N
607	chr6_ssto_hap7	2935392	2935393	rs10885	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p21.33	PRRC2A	rs10885-T		2E-36		0.035	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
607	chr6_ssto_hap7	2935695	2935696	rs34137317	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first birth	542,901 European ancestry individuals	NA	6p21.33	PRRC2A	rs34137317-T	0.0277	6E-10		0.2473	[0.17-0.33] unit increase	NR [9744772] (imputed)	N
607	chr6_ssto_hap7	2936000	2936001	rs2736155	34741163	Eijsbouts C	2021-11-05	Nat Genet	Genome-wide analysis of 53,400 people with irritable bowel syndrome highlights shared genetic pathways with mood and anxiety disorders.	Irritable bowel syndrome	53,400 European ancestry cases, 433,201 European ancestry controls	205,252 European ancestry cases, 1,384,055 European ancestry controls	6p21.33	NR	rs2736155-C	0.4758	3E-12		0.022300169	[0.016-0.029] unit increase	Illumina [9885498] (imputed)	N
607	chr6_ssto_hap7	2936000	2936001	rs2736155	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	PRRC2A	rs2736155-C	NR	6E-10		0.0194264	[0.013-0.026] unit increase	Affymetrix [323858] (imputed)	N
607	chr6_ssto_hap7	2936000	2936001	rs2736155	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	PRRC2A	rs2736155-C	NR	8E-9		0.0180894	[0.012-0.024] unit increase	Affymetrix [127266] (imputed)	N
607	chr6_ssto_hap7	2936000	2936001	rs2736155	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Anxiety	at least 23,606 European ancestry cases, at least 113,351 European ancestry controls	624,615 European ancestry cases, 1,310,854 European ancestry controls	6p21.33	PRRC2A	rs2736155-G	0.4811	5E-18		0.019583363	[0.015-0.025] unit decrease	NR [9417325] (imputed)	N
607	chr6_ssto_hap7	2936000	2936001	rs2736155	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p21.33	NR	rs2736155-C	0.478	6E-7		0.0059	[0.0035-0.0083] unit increase	NR [7666894] (imputed)	N
607	chr6_ssto_hap7	2936249	2936250	rs7889	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	6p21.33	BAG6	rs7889-C	0.3609	3E-8		0.012577614	[0.0082-0.017] unit increase	Affymetrix [11514654] (imputed)	N
607	chr6_ssto_hap7	2936249	2936250	rs7889	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	6p21.33	PRRC2A	rs7889-C	0.3904	4E-14		0.2499	[0.19-0.31] mmHg decrease	Affymetrix [NR] (imputed)	N
607	chr6_ssto_hap7	2937176	2937177	rs2077491	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	BAG6	rs2077491-C	NR	8E-13		0.0219509	[0.016-0.028] unit decrease	Affymetrix [323123] (imputed)	N
607	chr6_ssto_hap7	2937176	2937177	rs2077491	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	BAG6	rs2077491-C	NR	2E-15		0.0226711	[0.017-0.028] unit increase	Affymetrix [321169] (imputed)	N
607	chr6_ssto_hap7	2937176	2937177	rs2077491	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA	6p21.33	NR	rs2077491-?	NR	5E-6		0.0322	[0.018-0.046] unit decrease	Illumina [at least 560000] (imputed)	N
607	chr6_ssto_hap7	2937467	2937471	rs757744062	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.33	BAG6	rs757744062-CAAAA	0.8204	4E-8		0.0522	[0.034-0.071] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
607	chr6_ssto_hap7	2937552	2937553	rs2178899	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	6p21.33	NA	rs2178899-A	0.8833	5E-23		0.0243	[0.019-0.029] unit increase	NR [~ 27400000] (imputed)	N
607	chr6_ssto_hap7	2937850	2937851	rs750332	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls	NA	6p21.33	BAG6	rs750332-C	0.180658	4E-14		0.055028614	[0.041-0.069] unit decrease	Affymetrix [7288503] (imputed)	N
607	chr6_ssto_hap7	2941330	2941331	rs1077393	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	6p21.33	HLA-C	rs1077393-A	0.477302	2E-8		5.65	z score decrease	NR [10847151] (imputed)	N
607	chr6_ssto_hap7	2941330	2941331	rs1077393	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling worry	372,869 European ancestry individuals	NA	6p21.33	HLA-C	rs1077393-A	0.477302	4E-10		6.267	unit decrease	NR [10847151] (imputed)	N
607	chr6_ssto_hap7	2942300	2942300	rs751715213	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	BAG6	rs751715213-CAAAAAAAAAA	NR	7E-9		0.0198369	[0.013-0.027] unit decrease	Affymetrix [319769] (imputed)	N
607	chr6_ssto_hap7	2942300	2942300	rs751715213	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	BAG6	rs751715213-CAAAAAAAAAA	NR	3E-14		0.0288432	[0.021-0.036] unit decrease	Affymetrix [323858] (imputed)	N
607	chr6_ssto_hap7	2942300	2942300	rs751715213	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	BAG6	rs751715213-CAAAAAAAAAA	NR	4E-8		0.0187898	[0.012-0.025] unit decrease	Affymetrix [319769] (imputed)	N
607	chr6_ssto_hap7	2942300	2942300	rs751715213	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	BAG6	rs751715213-CAAAAAAAAAA	NR	4E-13		0.0275826	[0.02-0.035] unit decrease	Affymetrix [127266] (imputed)	N
607	chr6_ssto_hap7	2942300	2942300	rs751715213	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	BAG6	rs751715213-CAAAAAAAAAA	NR	3E-8		0.0190286	[0.012-0.026] unit increase	Affymetrix [321016] (imputed)	N
607	chr6_ssto_hap7	2942300	2942300	rs751715213	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	BAG6	rs751715213-CAAAAAAAAAA	NR	3E-10		0.0235731	[0.016-0.031] unit increase	Affymetrix [323123] (imputed)	N
607	chr6_ssto_hap7	2942300	2942300	rs751715213	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	BAG6	rs751715213-CAAAAAAAAAA	NR	3E-10		0.0218162	[0.015-0.029] unit decrease	Affymetrix [321169] (imputed)	N
607	chr6_ssto_hap7	2942300	2942300	rs751715213	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p21.33	BAG6	rs751715213-CAAAAAAAAAA	NR	4E-9		0.0222292	[0.015-0.03] unit decrease	Affymetrix [323858] (imputed)	N
607	chr6_ssto_hap7	2944543	2944544	rs3130048	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6p21.33	NR	rs3130048-?	NR	1E-11				Affymetrix [~ 8270000] (imputed)	N
607	chr6_ssto_hap7	2944543	2944544	rs3130048	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	6p21.33	NA	rs3130048-T	0.7315	2E-20		0.0169	[0.013-0.02] unit decrease	NR [~ 27400000] (imputed)	N
607	chr6_ssto_hap7	2947170	2947171	rs805303	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Systolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	6p21.33	BAT2, BAT5	rs805303-A	0.382	6E-6	(EA, initial)	0.368	[0.21-0.53] unit decrease	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
607	chr6_ssto_hap7	2947170	2947171	rs805303	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Diastolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	6p21.33	BAT2, BAT5	rs805303-A	0.382	4E-6	(EA, initial)	0.23	[0.13-0.33] unit decrease	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
607	chr6_ssto_hap7	2947170	2947171	rs805303	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Systolic blood pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	6p21.33	BAT2, BAT5	rs805303-A	0.3958	3E-6	(EA)	0.0174	unit decrease	Illumina [242296]	N
607	chr6_ssto_hap7	2947170	2947171	rs805303	21909115	Ehret GB	2011-09-11	Nature	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Systolic blood pressure	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	6p21.33	BAT2, BAT5	rs805303-G	0.61	2E-11		0.376	[NR] mmHg increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
607	chr6_ssto_hap7	2947170	2947171	rs805303	21909115	Ehret GB	2011-09-11	Nature	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Hypertension	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	6p21.33	BAT2, BAT5	rs805303-G	0.61	1E-10		0.054	[NR] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
607	chr6_ssto_hap7	2947170	2947171	rs805303	21909115	Ehret GB	2011-09-11	Nature	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Diastolic blood pressure	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	6p21.33	BAT2, BAT5	rs805303-G	0.61	3E-11		0.228	[NR] mmHg increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
607	chr6_ssto_hap7	2950930	2950931	rs2736201	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6p21.33	BAG6	rs2736201-C	0.156392	7E-12		0.036189657	[0.026-0.047] unit increase	Affymetrix [93095623] (imputed)	N
607	chr6_ssto_hap7	2950930	2950931	rs2736201	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	6p21.33	BAG6	rs2736201-C	0.156492	3E-71		0.06142095	[0.055-0.068] unit increase	Affymetrix [93095623] (imputed)	N
607	chr6_ssto_hap7	2951317	2951318	rs3117582	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Squamous cell lung carcinoma	8,350 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	6p21.33	NR	rs3117582-G	NR	2E-9		0.77	[0.71-0.84]	NR [NR] (imputed)	N
607	chr6_ssto_hap7	2951317	2951318	rs3117582	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Non-small cell lung cancer	27,120 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	6p21.33	NR	rs3117582-G	NR	2E-6		0.87	[0.82-0.92]	NR [NR] (imputed)	N
607	chr6_ssto_hap7	2951317	2951318	rs3117582	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p21.33	BAT3, APOM	rs3117582-C	0.34	1E-30				Illumina [118177]	N
607	chr6_ssto_hap7	2951317	2951318	rs3117582	19836008	Landi MT	2009-10-15	Am J Hum Genet	A genome-wide association study of lung cancer identifies a region of chromosome 5p15 associated with risk for adenocarcinoma.	Lung adenocarcinoma	5,739 European ancestry cases, 5,848 European ancestry controls	7,561 European ancestry cases, 13,818 European ancestry controls	6p21.33	APOM, BAT3	rs3117582-C	0.10	5E-12		1.22	[1.15-1.29]	Illumina [515922]	N
607	chr6_ssto_hap7	2951317	2951318	rs3117582	19654303	Broderick P	2009-08-04	Cancer Res	Deciphering the impact of common genetic variation on lung cancer risk: a genome-wide association study.	Lung cancer	1,952 European ancestry cases, 1,438 European ancestry controls	2,465 European ancestry cases, 3,005 European ancestry controls, 3,143 individuals, 3,762 individuals	6p21.33	BAT3	rs3117582-?	NR	4E-10		1.24	[1.16-1.33]	Illumina [511919]	N
607	chr6_ssto_hap7	2951317	2951318	rs3117582	18978787	Wang Y	2008-11-02	Nat Genet	Common 5p15.33 and 6p21.33 variants influence lung cancer risk.	Lung cancer	5,095 European ancestry cases, 5,200 European ancestry controls	2,448 European ancestry cases, 2,983 European ancestry controls	6p21.33	BAT3, MSH5	rs3117582-C	NR	5E-10		1.24	[1.16-1.33]	Illumina [223891]	N
607	chr6_ssto_hap7	2952840	2952841	rs1266078	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	APOM	rs1266078-G	0.032	3E-12	(Apolipoprotein M, APOM.10445.20.3)	0.49	[0.35-0.63] unit decrease	Affymetrix [10572788] (imputed)	N
607	chr6_ssto_hap7	2953403	2953404	rs805297	21844665	Hu HJ	2011-08-16	Exp Mol Med	Common variants at the promoter region of the APOM confer a risk of rheumatoid arthritis.	Rheumatoid arthritis	100 Korean ancestry cases, 600 Korean ancestry controls	578 Korean ancestry cases, 711 Korean ancestry controls	6p21.33	APOM	rs805297-A	0.36	3E-10		1.56	[1.36-1.80]	Affymetrix [300909]	N
607	chr6_ssto_hap7	2955262	2955263	rs113947529	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ISG15	5,349 Icelandic ancestry individuals	NA	6p21.33		rs113947529-T	0.01503	5E-16		0.622819	[0.47-0.77] unit decrease	Illumina [7506463] (imputed)	N
607	chr6_ssto_hap7	2958910	2958911	rs805263	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p21.33	C6orf47	rs805263-C	0.026972	3E-12		0.049836818	[0.036-0.064] unit increase	Affymetrix [93095623] (imputed)	N
607	chr6_ssto_hap7	2959194	2959195	rs148844907	33608531	Wu Y	2021-02-19	Nat Commun	GWAS of peptic ulcer disease implicates Helicobacter pylori infection, other gastrointestinal disorders and depression.	Inflammatory bowel disease	7,045 European ancestry cases, 449,282 European ancestry controls	NA	6p21.33	NR	rs148844907-T	0.99	1E-40		0.47	[NR]	NR [8546065] (imputed)	N
607	chr6_ssto_hap7	2959194	2959195	rs148844907	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p21.33	C6orf47	rs148844907-A	0.01	2E-12		1.92	[1.74-2.12]	Illumina [at least 560000] (imputed)	N
607	chr6_ssto_hap7	2959530	2959531	rs805262	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (mother's age at death or mother's attained age)	up to 699,000 individuals	NA	6p21.33	NR	rs805262-G		7E-7				Illumina [458525]	N
607	chr6_ssto_hap7	2961634	2961635	rs805260	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	GPANK1	rs805260-G	NR	8E-13		0.0307796	[0.022-0.039] unit decrease	Affymetrix [323123] (imputed)	N
607	chr6_ssto_hap7	2962138	2962139	rs76072474	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	6p21.33	NR	rs76072474-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
607	chr6_ssto_hap7	2962138	2962139	rs76072474	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	6p21.33	NR	rs76072474-?	NR	1E-11				Affymetrix [~ 8270000] (imputed)	N
607	chr6_ssto_hap7	2962938	2962939	rs3130618	25344690	Feenstra B	2014-10-26	Nat Genet	Common variants associated with general and MMR vaccine-related febrile seizures.	Febrile seizures (MMR vaccine-related)	929 European ancestry cases, 4,118 European ancestry controls	Up to 408 European ancestry cases, Up to 1,645 European ancestry controls	6p21.33	GPANK1	rs3130618-C	0.79	2E-7		1.34	[1.20-1.49]	Illumina [8129524] (imputed)	N
607	chr6_ssto_hap7	2962938	2962939	rs3130618	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.33	BAT4	rs3130618-A	0.1811	2E-56		3.03	[NR]	Illumina [242824]	N
607	chr6_ssto_hap7	2966747	2966748	rs115820082	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	CSNK2B, CSNK2B-LY6G5B-1181	rs115820082-G	NR	4E-12		0.0902636	[0.065-0.116] unit decrease	Affymetrix [321016] (imputed)	N
607	chr6_ssto_hap7	2966835	2966836	rs3117578	31375628	Tengvall K	2019-08-02	Proc Natl Acad Sci U S A	Molecular mimicry between Anoctamin 2 and Epstein-Barr virus nuclear antigen 1 associates with multiple sclerosis risk.	Anti-anoctamin 2 antibody levels	11,936 European ancestry individuals	NA	6p21.33	NR	rs3117578-A	NR	2E-7		0.063	[0.034-0.092] unit increase	Illumina [615763]	N
607	chr6_ssto_hap7	2967546	2967547	rs9267531	26316170	Demirci FY	2015-08-28	Arthritis Rheumatol	Identification of a New Susceptibility Locus for Systemic Lupus Erythematosus on Chromosome 12 in Individuals of European Ancestry.	Systemic lupus erythematosus	661 European ancestry cases, 487 European ancestry controls	4,467 European ancestry cases, 9,114 European ancestry controls	6p21.33	CSNK2B	rs9267531-?	NR	8E-8				Affymetrix [up to 700598]	N
607	chr6_ssto_hap7	2967546	2967547	rs9267531	25827949	Kunz M	2015-05-04	Exp Dermatol	Genome-wide association study identifies new susceptibility loci for cutaneous lupus erythematosus.	Cutaneous lupus erythematosus	151 European ancestry cases, 1,288 European ancestry controls	219 European ancestry cases, 262 European ancestry controls	6p21.33	CSNK2B, MSH5, MICA, MICB	rs9267531-G	0.1	3E-14		2.62	[1.93-3.54]	Affymetrix [906600]	N
607	chr6_ssto_hap7	2968982	2968983	rs805268	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p21.33		rs805268-A	0.969	9E-19				Affymetrix [10369434] (imputed)	N
607	chr6_ssto_hap7	2981995	2981996	rs9267536	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6p21.33	BAT5	rs9267536-?	NR	6E-6	(TAG 52:6)	0.34227857	[0.19-0.49] unit increase	Affymetrix [at least 2500000] (imputed)	N
607	chr6_ssto_hap7	2996268	2996269	rs805273	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	ABHD16A, XXbac-BPG32J3.20, MIR4646	rs805273-A	0.06820461	5E-16	(Complement C4)	0.699	[0.53-0.87] unit increase	Affymetrix [509946]	N
607	chr6_ssto_hap7	3000313	3000314	rs1266071	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	6p21.33	ABHD16A, XXbac-BPG32J3.20	rs1266071-T	0.107214	4E-14		0.027769113	[0.021-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
607	chr6_ssto_hap7	3003085	3003086	rs34406901	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	6p21.33	XXbac-BPG32J3.20	rs34406901-G	0.0566	7E-15		0.039119102	[0.029-0.049] unit increase	Affymetrix [93095623] (imputed)	N
607	chr6_ssto_hap7	3004251	3004252	rs9267546	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LIPA	5,367 Icelandic ancestry individuals	NA	6p21.33		rs9267546-A	0.08009	2E-15		0.274526	[0.21-0.34] unit increase	Illumina [7506463] (imputed)	N
607	chr6_ssto_hap7	3006577	3006578	rs2242653	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	6p21.33	NR	rs2242653-?	NR	3E-10	(MIC-A)	0.545677	[0.38-0.71] unit decrease	Illumina [11901634] (imputed)	N
607	chr6_ssto_hap7	3006797	3006798	rs9267548	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p21.33	NR	rs9267548-?	NR	5E-9		0.1189	[0.079-0.159] unit decrease	Illumina [at least 560000] (imputed)	N
607	chr6_ssto_hap7	3010279	3010280	rs805285	33941608	Khan A	2021-05-03	J Am Soc Nephrol	Medical Records-Based Genetic Studies of the Complement System.	Complement C4 levels	3,247 European ancestry individuals, 600 African ancestry individuals, 151 East Asian ancestry individuals	NA	6p21.33	C4	rs805285-C	0.32	1E-14		0.19	[0.15-0.22] unit increase	NR [NR] (imputed)	N
607	chr6_ssto_hap7	3010279	3010280	rs805285	33941608	Khan A	2021-05-03	J Am Soc Nephrol	Medical Records-Based Genetic Studies of the Complement System.	Complement C4 levels	3,247 European ancestry individuals, 600 African ancestry individuals, 151 East Asian ancestry individuals	NA	6p21.33	C4	rs805285-C	0.25	2E-10	(EA)	0.18	[0.14-0.22] unit increase	NR [NR] (imputed)	N
608	chr6_ssto_hap7	3017313	3017314	rs15574	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking initiation (ever regular vs never regular)	up to 433,216 European ancestry individuals	NA	6p21.33	LY6G6C	rs15574-A	0.194	7E-9		0.0159	[0.011-0.021] unit increase	Illumina [~ 250000] (imputed)	N
608	chr6_ssto_hap7	3019033	3019034	rs805294	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.33		rs805294-A	0.644	4E-13				Affymetrix [10369434] (imputed)	N
608	chr6_ssto_hap7	3019334	3019335	rs805293	31879980	German CA	2019-12-26	Genet Epidemiol	Ordered multinomial regression for genetic association analysis of ordinal phenotypes at Biobank scale.	Hypertension	30,822 British ancestry normal blood pressure individuals, 25,242 British ancestry elevated blood pressure individuals, 50,461 British ancestry stage 1 hypertension individuals, 75,286 British ancestry stage 2 hypertension individuals, 3,754 British ancestry hypertension crisis individuals	NA	6p21.33	MPIG6B	rs805293-?	NR	3E-12		0.0433015	NR unit decrease	Affymetrix [464137]	N
608	chr6_ssto_hap7	3019334	3019335	rs805293	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	6p21.33	NR	rs805293-A	0.46	8E-9		0.00643097	[0.0042-0.0086] unit decrease	NR [9732723] (imputed)	N
608	chr6_ssto_hap7	3022473	3022474	rs453098	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SEMA6C	5,362 Icelandic ancestry individuals	NA	6p21.33		rs453098-A	0.07505	1E-13		0.264219	[0.19-0.33] unit increase	Illumina [7506463] (imputed)	N
608	chr6_ssto_hap7	3022473	3022474	rs453098	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PCDHGA11	5,360 Icelandic ancestry individuals	NA	6p21.33		rs453098-A	0.07505	4E-12		0.237269	[0.17-0.3] unit increase	Illumina [7506463] (imputed)	N
608	chr6_ssto_hap7	3022473	3022474	rs453098	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HSPA1A	5,360 Icelandic ancestry individuals	NA	6p21.33		rs453098-A	0.07505	8E-15		0.272702	[0.2-0.34] unit increase	Illumina [7506463] (imputed)	N
608	chr6_ssto_hap7	3023202	3023203	rs11575845	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C6orf25	5,363 Icelandic ancestry individuals	NA	6p21.33		rs11575845-G	0.03386	7E-46		0.736966	[0.64-0.84] unit decrease	Illumina [7506463] (imputed)	N
608	chr6_ssto_hap7	3023202	3023203	rs11575845	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6p21.33		rs11575845-?	NR	4E-7		0.890554	[0.85-0.94]	NR [685523]	N
608	chr6_ssto_hap7	3023202	3023203	rs11575845	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	6p21.33	C6orf25	rs11575845-G	0.06333	6E-27		0.05543542	[0.045-0.066] unit increase	Affymetrix [93095623] (imputed)	N
608	chr6_ssto_hap7	3028203	3028204	rs805305	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C6orf25	5,363 Icelandic ancestry individuals	NA	6p21.33		rs805305-G	0.32	4E-22		0.196057	[0.16-0.24] unit increase	Illumina [7506463] (imputed)	N
608	chr6_ssto_hap7	3028374	3028375	rs707916	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling nervous	373,121 European ancestry individuals	NA	6p21.33	CCHCR1	rs707916-A	0.365563	2E-13		7.35	z score decrease	NR [10847151] (imputed)	N
608	chr6_ssto_hap7	3035233	3035234	rs115204832	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ISG15	5,349 Icelandic ancestry individuals	NA	6p21.33		rs115204832-G	0.01432	1E-183		2.1193	[1.98-2.26] unit decrease	Illumina [7506463] (imputed)	N
608	chr6_ssto_hap7	3035233	3035234	rs115204832	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C2	5,363 Icelandic ancestry individuals	NA	6p21.33		rs115204832-G	0.01432	1E-282		2.53186	[2.39-2.67] unit decrease	Illumina [7506463] (imputed)	N
608	chr6_ssto_hap7	3035948	3035949	rs145269503	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	6p21.33	CLIC1	rs145269503-A	0.0221	3E-36		0.1547004	[0.13-0.18] unit decrease	Affymetrix [~ 2500000] (imputed)	N
608	chr6_ssto_hap7	3037671	3037672	rs2736154	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		6p21.33	CLIC1	rs2736154-A	0.790274	4E-8		0.0109563	[0.007-0.0149] unit increase	Affymetrix [12370749]	N
608	chr6_ssto_hap7	3037673	3037674	rs396369	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	6p21.33		rs396369-T	NR	2E-15		0.0202	[0.015-0.025] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
608	chr6_ssto_hap7	3038343	3038344	rs28381344	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	6p21.33	NR	rs28381344-A	0.0438845616860758	1E-8		0.020618176	[0.014-0.028] unit increase	NR [NR]	N
608	chr6_ssto_hap7	3038343	3038344	rs28381344	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	6p21.33	NR	rs28381344-A	0.0438845616860758	1E-8		0.013281214	[0.0087-0.0179] unit increase	NR [NR]	N
608	chr6_ssto_hap7	3038343	3038344	rs28381344	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Strep throat	52,487 European ancestry cases, 22,017 European ancestry controls	NA	6p21.33	NR	rs28381344-?	NR	1E-6		0.0694	[0.041-0.098] unit decrease	Illumina [at least 560000] (imputed)	N
608	chr6_ssto_hap7	3038547	3038548	rs3131382	32752121	Nedoszytko B	2020-07-31	Int J Mol Sci	Results from a Genome-Wide Association Study (GWAS) in Mastocytosis Reveal New Gene Polymorphisms Associated with WHO Subgroups.	Systemic mastocytosis	93 European ancestry cases, 5,606 European ancestry controls	NA	6p21.33	MSH5	rs3131382-A	0.03194	9E-7		3.247	[2.75-3.74]	Illumina [281811]	N
608	chr6_ssto_hap7	3038547	3038548	rs3131382	32752121	Nedoszytko B	2020-07-31	Int J Mol Sci	Results from a Genome-Wide Association Study (GWAS) in Mastocytosis Reveal New Gene Polymorphisms Associated with WHO Subgroups.	Mastocytosis	234 European ancestry cases, 5,606 European ancestry controls	NA	6p21.33	MSH5	rs3131382-A	0.03194	3E-8		2.602	[2.25-2.95]	Illumina [281811]	N
608	chr6_ssto_hap7	3038964	3038965	rs409558	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	CLIC1, MSH5-SAPCD1, MSH5, SAPCD1-AS1, RNU6-850P, SAPCD1, VARS, VWA7	rs409558-C	0.1591365	1E-10	(EA, Complement C4)	0.3861	[0.27-0.5] unit increase	Affymetrix [509946]	N
608	chr6_ssto_hap7	3038964	3038965	rs409558	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Systolic blood pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	154,543 European ancestry individuals, 26,183 South Asian ancestry individuals	6p21.33	MSH5, SAPCD1	rs409558-G	0.176	6E-8		0.33	[0.21-0.45] unit decrease	Illumina [247039]	N
608	chr6_ssto_hap7	3038964	3038965	rs409558	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Pulse pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	154,543 European ancestry individuals, 26,183 South Asian ancestry individuals	6p21.33	MSH5, SAPCD1	rs409558-G	0.176	3E-9		0.26	[0.18-0.34] unit decrease	Illumina [247039]	N
608	chr6_ssto_hap7	3039727	3039728	rs28381348	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p21.33	MSH5	rs28381348-C	0.04	5E-6	(EA)	2.81	[1.77-4.47]	Illumina [up to 547389]	N
608	chr6_ssto_hap7	3040158	3040159	rs1144709	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	6p21.33	Intergenic	rs1144709-T	0.2281	3E-10	(MTAG)	0.0134	[0.0093-0.0175] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
608	chr6_ssto_hap7	3040158	3040159	rs1144709	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	6p21.33	Intergenic	rs1144709-C	0.7719	6E-9		0.0135	[0.009-0.018] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
608	chr6_ssto_hap7	3040158	3040159	rs1144709	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	6p21.33	Intergenic	rs1144709-C	0.7725	3E-10		0.017	[0.012-0.022] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
608	chr6_ssto_hap7	3056097	3056098	rs3131378	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	6p21.33	MSH5-SAPCD1	rs3131378-G	0.098896646	3E-18		1.1810031	[1.137601617-1.226060343]	Illumina [10439017] (imputed)	N
608	chr6_ssto_hap7	3057500	3057501	rs707939	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	MSH5, MSH5-SAPCD1	rs707939-A	NR	4E-10		0.0204551	[0.014-0.027] unit decrease	Affymetrix [323123] (imputed)	N
608	chr6_ssto_hap7	3057500	3057501	rs707939	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.33	ABHD16A, AIF1, APOM, BAG6, C2, C2-AS1, C4A, C4B, C4B_2, C6orf25, C6orf47, C6orf48, CFB, CLIC1, CSNK2B, CYP21A1P, CYP21A2, DDAH2, DXO, EHMT2, GPANK1, HSPA1A, HSPA1B, HSPA1L, LSM2, LY6G5B, LY6G5C, LY6G6C, LY6G6D, LY6G6E, LY6G6F, MIR1236, MIR4646, MIR6832, MSH5, MSH5-SAPCD1, NELFE, NEU1, PRRC2A, SAPCD1, SAPCD1-AS1, SKIV2L, SLC44A4, SNORA38, SNORD48, SNORD52, STK19, TNXA, TNXB, VARS, VWA7, ZBTB12	rs707939-A		4E-12		1.07	[1.05-1.09]	Affymetrix, Illumina [NR]	N
608	chr6_ssto_hap7	3057662	3057663	rs17207524	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	6p21.33	MSH5	rs17207524-T	0.06447	3E-8		1.09	NR	Affymetrix [9154080] (imputed)	N
608	chr6_ssto_hap7	3057662	3057663	rs17207524	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs17207524-G	0.96171875	3E-9	(TGM3, 4471_50_2)	0.3747752	[0.25-0.5] unit increase	Illumina [> 1000000] (imputed)	N
608	chr6_ssto_hap7	3057662	3057663	rs17207524	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs17207524-G	0.96171875	1E-31	(G6B, 7065_1_4)	0.7349115	[0.61-0.86] unit increase	Illumina [> 1000000] (imputed)	N
608	chr6_ssto_hap7	3057662	3057663	rs17207524	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.33	NR	rs17207524-G	0.96171875	1E-14	(C4A C4B, 4481_34_2)	0.5052215	[0.38-0.63] unit decrease	Illumina [> 1000000] (imputed)	N
608	chr6_ssto_hap7	3058709	3058710	rs3115672	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Squamous cell lung carcinoma	8,350 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	6p21.33	NR	rs3115672-T	NR	2E-8		1.28	[1.17-1.39]	NR [NR] (imputed)	N
608	chr6_ssto_hap7	3058709	3058710	rs3115672	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Non-small cell lung cancer	27,120 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	6p21.33	NR	rs3115672-T	NR	4E-6		1.15	[1.08-1.22]	NR [NR] (imputed)	N
608	chr6_ssto_hap7	3058709	3058710	rs3115672	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	6p21.33	NR	rs3115672-T	0.113634053654599	4E-15		0.014519162	[0.011-0.018] unit decrease	NR [NR]	N
608	chr6_ssto_hap7	3058709	3058710	rs3115672	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	6p21.33	NR	rs3115672-T	0.113634053654599	6E-15		0.018733539	[0.014-0.023] unit decrease	NR [NR]	N
608	chr6_ssto_hap7	3058709	3058710	rs3115672	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	6p21.33	NR	rs3115672-T	0.113634053654599	5E-14		0.015431175	[0.011-0.019] unit decrease	NR [NR]	N
608	chr6_ssto_hap7	3058709	3058710	rs3115672	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	6p21.33	NR	rs3115672-T	0.113634053654599	2E-15		0.0121121025	[0.0091-0.0151] unit decrease	NR [NR]	N
608	chr6_ssto_hap7	3058801	3058802	rs61748589	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C4A;C4B	5,362 Icelandic ancestry individuals	NA	6p21.33		rs61748589-G	0.01635	1E-9		0.440324	[0.3-0.58] unit decrease	Illumina [7506463] (imputed)	N
608	chr6_ssto_hap7	3059079	3059080	rs2075801	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	CLIC1, MSH5-SAPCD1, MSH5, SAPCD1-AS1, RNU6-850P, SAPCD1, VARS, VWA7	rs2075801-A	0.1582915	8E-15	(EA, gp41 C34 peptide, HIV)	0.4506	[0.34-0.56] unit increase	Affymetrix [509946]	N
608	chr6_ssto_hap7	3060171	3060172	rs707938	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	6p21.33	NR	rs707938-A	0.319085	5E-9		0.039337814	[0.026-0.053] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
608	chr6_ssto_hap7	3060171	3060172	rs707938	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	6p21.33	Intergenic	rs707938-A	0.6802	4E-9		0.018	[0.012-0.024] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
608	chr6_ssto_hap7	3060171	3060172	rs707938	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p21.33	NR	rs707938-?	NR	9E-7		4.905	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
608	chr6_ssto_hap7	3060171	3060172	rs707938	29773799	Horikoshi M	2018-05-17	Nat Commun	Elucidating the genetic architecture of reproductive ageing in the Japanese population.	Menarche (age at onset)	67,029 Japanese ancestry women	73,397 European ancestry women	6p21.33	NR	rs707938-A	0.5873	1E-12	(japanese)	0.189	[0.14-0.24] year increase	Illumina [at least 532488] (imputed)	N
608	chr6_ssto_hap7	3060171	3060172	rs707938	26414677	Day FR	2015-11-01	Nat Genet	Large-scale genomic analyses link reproductive aging to hypothalamic signaling, breast cancer susceptibility and BRCA1-mediated DNA repair.	Menopause (age at onset)	up to 69,626 European ancestry women	NA	6p21.33	MSH5, HLA	rs707938-G	0.32	7E-15		0.17	[0.13-0.21] years decrease	Affymetrix, Illumina [~ 2600000] (imputed)	N
608	chr6_ssto_hap7	3060737	3060738	rs1802127	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.33	NR	rs1802127-T	0.016	3E-6	(women)	0.571389	[0.33-0.81] unit increase	Affymetrix [up to 8900000] (imputed)	N
608	chr6_ssto_hap7	3060737	3060738	rs1802127	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.33	NR	rs1802127-T	0.016	1E-10		0.461925	[0.32-0.6] unit increase	Affymetrix [up to 8900000] (imputed)	N
608	chr6_ssto_hap7	3061563	3061564	rs28399987	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs28399987-?		7E-8		1.06	[1.04-1.09]	Illumina [7645193] (imputed)	N
608	chr6_ssto_hap7	3061563	3061564	rs28399987	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p21.33	MSH5, C6orf26	rs28399987-A	0.02	8E-8	(Turkish)	3.55	[2.17-5.79]	Illumina [up to 547389]	N
608	chr6_ssto_hap7	3064278	3064279	rs3101017	33909500	Moll M	2021-04-28	Am J Physiol Lung Cell Mol Physiol	A Systematic Analysis of Protein-altering Exonic Variants in Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease	up to 31,465 European ancestry cases, up to 203,688 European ancestry controls, up to 1,413 African ancestry cases, up to 6,080 African ancestry controls, up to 287 East Asian ancestry cases, up to 7,484 East Asian ancestry controls, up to 61 Hispanic cases, up to 613 Hispanic controls	NA	6p21.33	VWA7	rs3101017-C	0.13	2E-14		1.12	[1.09 -1.15]	Illumina [at least 109036]	N
608	chr6_ssto_hap7	3064278	3064279	rs3101017	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p21.33	VWA7	rs3101017-C		2E-35		0.041	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
608	chr6_ssto_hap7	3064763	3064765	rs9279411	28067912	Lee JC	2017-01-09	Nat Genet	Genome-wide association study identifies distinct genetic contributions to prognosis and susceptibility in Crohn's disease.	Poor prognosis in Crohn's disease	1,762 Northern European ancestry poor prognosis cases, 972 Northern European ancestry good prognosis controls.		6p21.33	MHC	rs9279411-?	NR	5E-9		1.67	[1.41-2.00]	Affymetrix, Illumina [at least 7000000] (imputed)	N
608	chr6_ssto_hap7	3069220	3069221	rs9461721	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.33		rs9461721-A	0.972	3E-27				Affymetrix [10369434] (imputed)	N
608	chr6_ssto_hap7	3069932	3069933	rs3130490	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	6p21.33	NR	rs3130490-?	NR	5E-10				Affymetrix [~ 8270000] (imputed)	N
608	chr6_ssto_hap7	3069932	3069933	rs3130490	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	6p21.33	NR	rs3130490-?	NR	2E-14				Affymetrix [~ 8270000] (imputed)	N
608	chr6_ssto_hap7	3070310	3070311	rs143029752	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs143029752-?		3E-8		1.78	[1.45-2.19]	Illumina [7645193] (imputed)	N
608	chr6_ssto_hap7	3070496	3070497	rs191306205	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	6p21.33	NR	rs191306205-?	NR	1E-9	(CCL19)	0.542377	[0.37-0.72] unit increase	Illumina [11901634] (imputed)	N
608	chr6_ssto_hap7	3070542	3070543	rs527960948	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on switched memory B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs527960948-C	0.09002	2E-9		0.3289	[0.22-0.44] unit increase	Illumina [18238311] (imputed)	N
608	chr6_ssto_hap7	3070542	3070543	rs527960948	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on IgD- CD38- B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs527960948-C	0.09002	4E-8		0.2922	[0.19-0.4] unit increase	Illumina [18238311] (imputed)	N
608	chr6_ssto_hap7	3071265	3071266	rs805825	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.33		rs805825-G	0.561	1E-14				Affymetrix [10369434] (imputed)	N
608	chr6_ssto_hap7	3071265	3071266	rs805825	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p21.33		rs805825-G	0.561	2E-10				Affymetrix [10369434] (imputed)	N
608	chr6_ssto_hap7	3072470	3072471	rs707930	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	6p21.33	NR	rs707930-T	0.477089	4E-14		0.0517342	[0.038-0.065] unit decrease	Affymetrix [17914406] (imputed)	N
608	chr6_ssto_hap7	3073053	3073054	rs6914412	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Mean platelet volume	21,347 Hispanic or Latin American individuals	NA	6p21.33		rs6914412-T	0.1345	4E-7		0.1401	[0.086-0.194] unit increase	Affymetrix, Illumina [NR] (imputed)	N
608	chr6_ssto_hap7	3073053	3073054	rs6914412	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	6p21.33	VWA7	rs6914412-C	0.0959	9E-11		0.03949006	[0.028-0.051] unit increase	Affymetrix [~ 2500000] (imputed)	N
608	chr6_ssto_hap7	3073401	3073402	rs707928	33563987	Tyrrell J	2021-02-09	Nat Commun	Genetic predictors of participation in optional components of UK Biobank.	Percentage of invited food questionnaires completed	300,639 European ancestry individuals	NA	6p21.33	NR	rs707928-A	0.66	8E-9		0.54	[0.36-0.72] unit decrease	Affymetrix [39302896] (imputed)	N
608	chr6_ssto_hap7	3073401	3073402	rs707928	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling worry	372,869 European ancestry individuals	NA	6p21.33	SAPCD1	rs707928-A	0.346873	2E-8		5.643	unit increase	NR [10847151] (imputed)	N
608	chr6_ssto_hap7	3076275	3076276	rs3130491	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Diastolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	6p21.33	VARS	rs3130491-A	0.3561	4E-14		0.317	[0.23-0.4] mmHg decrease	Affymetrix [NR] (imputed)	N
608	chr6_ssto_hap7	3076329	3076330	rs707927	31932636	Hebbar P	2020-01-13	Sci Rep	Genome-wide association study identifies novel risk variants from RPS6KA1, CADPS, VARS, and DHX58 for fasting plasma glucose in Arab population.	Fasting plasma glucose	1,353 Arab ancestry individuals	1,176 Arab ancestry individuals	6p21.33	VARS, VWA7	rs707927-G	NR	3E-9		5.928	[NR] unit increase	Illumina [632375]	N
608	chr6_ssto_hap7	3077359	3077360	rs909267	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	VARS	rs909267-C	NR	2E-8		0.0322466	[0.021-0.043] unit decrease	Affymetrix [321016] (imputed)	N
608	chr6_ssto_hap7	3079953	3079954	rs915652	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p21.33	VARS	rs915652-A	0.337	4E-32				Illumina [118177]	N
608	chr6_ssto_hap7	3086588	3086589	rs9469053	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on IgD- CD38dim B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.33		rs9469053-G	0.18398	1E-10		0.2372	[0.16-0.31] unit increase	Illumina [18238311] (imputed)	N
608	chr6_ssto_hap7	3089742	3089743	rs6899983	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Aspartate aminotransferase levels in low alcohol consumption	8,716 individuals	NA	6p21.33	NR	rs6899983-?	NR	2E-7		0.1467	[0.092-0.202] unit increase	Illumina [~ 7800000] (imputed)	N
608	chr6_ssto_hap7	3091874	3091875	rs9469054	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	6p21.33	VARS	rs9469054-A	0.0247	1E-20		0.1068719	[0.084-0.129] unit increase	Affymetrix [~ 2500000] (imputed)	N
608	chr6_ssto_hap7	3092676	3092677	rs3115670	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	6p21.33	VARS	rs3115670-T	NR	1E-19		0.0626938	[0.049-0.076] unit decrease	Illumina [13520550] (imputed)	N
609	chr6_ssto_hap7	3155362	3155363	rs9267647	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	6p21.33	NEU1	rs9267647-T	0.132946	4E-11		0.022519508	[0.016-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
609	chr6_ssto_hap7	3156003	3156004	rs115310850	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.33	NR	rs115310850-A	0.01	2E-11		0.616842	[0.44-0.8] unit increase	Affymetrix [up to 8900000] (imputed)	N
609	chr6_ssto_hap7	3157659	3157660	rs9267650	27539887	Chahal HS	2016-08-19	Nat Commun	Genome-wide association study identifies 14 novel risk alleles associated with basal cell carcinoma.	Basal cell carcinoma	12.945 European ancestry cases, 274,252 European ancestry controls	4,242 European ancestry cases, 12,802 European ancestry controls	6p21.33	NEU1	rs9267650-T	0.05	1E-8		1.17	[NR]	Illumina [at least 560000] (imputed)	N
609	chr6_ssto_hap7	3159452	3159453	rs622076	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C2	5,363 Icelandic ancestry individuals	NA	6p21.33		rs622076-A	0.1077	2E-23		0.300008	[0.24-0.36] unit increase	Illumina [7506463] (imputed)	N
609	chr6_ssto_hap7	3159452	3159453	rs622076	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	6p21.33	NEU1	rs622076-A	0.1361	3E-14	(discovery)	0.0035	[0.0025-0.0045] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
609	chr6_ssto_hap7	3160033	3160034	rs13118	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6p21.33	SLC44A4	rs13118-?	NR	5E-6	(TAG 52:6)	0.3502205	[0.2-0.5] unit increase	Affymetrix [at least 2500000] (imputed)	N
609	chr6_ssto_hap7	3167909	3167910	rs74290525	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	NA	6p21.33	SLC44A4	rs74290525-G		1E-12	(conditional)	2.06	[NR]	Illumina [> 644674] (imputed)	N
609	chr6_ssto_hap7	3167911	3167912	rs693906	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	6p21.33		rs693906-C	NR	2E-33		0.029	[0.024-0.034] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
609	chr6_ssto_hap7	3167911	3167912	rs693906	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Scarlet fever	6,812 European ancestry cases, 113,837 European ancestry controls	NA	6p21.33	NR	rs693906-?	NR	7E-6		0.1149	[0.065-0.164] unit decrease	Illumina [at least 560000] (imputed)	N
609	chr6_ssto_hap7	3169189	3169190	rs542418	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.33	NR	rs542418-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
609	chr6_ssto_hap7	3169189	3169190	rs542418	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	6p21.33	NR	rs542418-?	NR	3E-6		0.0552	[0.032-0.078] unit increase	Illumina [at least 560000] (imputed)	N
609	chr6_ssto_hap7	3169570	3169571	rs521977	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	SLC44A4	rs521977-T	NR	9E-19		0.0294152	[0.023-0.036] unit decrease	Affymetrix [323858] (imputed)	N
609	chr6_ssto_hap7	3169570	3169571	rs521977	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	SLC44A4	rs521977-T	NR	3E-16		0.0271844	[0.021-0.034] unit decrease	Affymetrix [127266] (imputed)	N
609	chr6_ssto_hap7	3169570	3169571	rs521977	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Perceived unattractiveness to mosquitoes	16,576 European ancestry individuals	NA	6p21.33	SLC44A4	rs521977-T	0.276	4E-7		0.131107	[0.08-0.182] unit increase	Illumina [7433384] (imputed)	N
609	chr6_ssto_hap7	3169570	3169571	rs521977	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	6p21.33	SLC44A4	rs521977-T	NR	9E-7		0.0192183	[0.012-0.027] unit increase	Illumina [13519193] (imputed)	N
609	chr6_ssto_hap7	3169570	3169571	rs521977	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	6p21.33	SLC44A4	rs521977-T	NR	4E-20		0.0380858	[0.03-0.046] unit increase	Illumina [13520550] (imputed)	N
609	chr6_ssto_hap7	3169809	3169810	rs11966200	20526339	Quan C	2010-06-06	Nat Genet	Genome-wide association study for vitiligo identifies susceptibility loci at 6q27 and the MHC.	Vitiligo	1,117 Han Chinese ancestry cases, 1,429 Han Chinese ancestry controls	6,623 East Asian ancestry cases, 10,740 East Asian ancestry controls	6p21.33	HLA-C, HLA-B	rs11966200-A	0.06	1E-48		1.9	[1.74-2.07]	Illumina [493909]	N
609	chr6_ssto_hap7	3170020	3170021	rs660550	31837886	Kennedy OJ	2019-12-02	Am J Kidney Dis	Coffee Consumption and Kidney Function: A Mendelian Randomization Study.	Coffee consumption (cups per day)	227,666 British ancestry individuals	NA	6p21.33	SLC44A4	rs660550-A	0.525	8E-9		0.034	NR cups per day decrease	NR [NR]	N
609	chr6_ssto_hap7	3170704	3170705	rs577272	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs577272-G	NR	6E-9		0.0164512	[0.011-0.022] unit decrease	Affymetrix [321114] (imputed)	N
609	chr6_ssto_hap7	3170704	3170705	rs577272	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs577272-G	NR	1E-21		0.0272058	[0.022-0.033] unit decrease	Affymetrix [321169] (imputed)	N
609	chr6_ssto_hap7	3170704	3170705	rs577272	27286809	Ligthart S	2016-06-10	BMC Genomics	Bivariate genome-wide association study identifies novel pleiotropic loci for lipids and inflammation.	C-reactive protein levels or total cholesterol levels (pleiotropy)	65,000 individuals (C-reactive protein), 100,184 individuals (total cholesterol)	NA	6p21.33	SLC44A4	rs577272-A	NR	2E-8				NR [2501549] (imputed)	N
609	chr6_ssto_hap7	3171231	3171232	rs644774	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs644774-C	NR	4E-22		0.0271946	[0.022-0.033] unit decrease	Affymetrix [319769] (imputed)	N
609	chr6_ssto_hap7	3171231	3171232	rs644774	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs644774-C	NR	6E-21		0.0263821	[0.021-0.032] unit decrease	Affymetrix [319769] (imputed)	N
609	chr6_ssto_hap7	3171231	3171232	rs644774	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs644774-C	NR	2E-13		0.0206859	[0.015-0.026] unit increase	Affymetrix [321016] (imputed)	N
609	chr6_ssto_hap7	3171454	3171455	rs494620	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs494620-A	NR	1E-13		0.0214886	[0.016-0.027] unit increase	Affymetrix [319769] (imputed)	N
609	chr6_ssto_hap7	3171454	3171455	rs494620	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	SLC44A4	rs494620-A	NR	4E-10		0.0201809	[0.014-0.026] unit increase	Affymetrix [323858] (imputed)	N
609	chr6_ssto_hap7	3171454	3171455	rs494620	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs494620-A	NR	6E-13		0.0208264	[0.015-0.027] unit increase	Affymetrix [319769] (imputed)	N
609	chr6_ssto_hap7	3171454	3171455	rs494620	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	SLC44A4	rs494620-A	NR	6E-9		0.0187173	[0.012-0.025] unit increase	Affymetrix [127266] (imputed)	N
609	chr6_ssto_hap7	3171454	3171455	rs494620	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs494620-A	NR	7E-16		0.0236685	[0.018-0.029] unit increase	Affymetrix [321169] (imputed)	N
609	chr6_ssto_hap7	3171454	3171455	rs494620	19448619	Stolk L	2009-05-15	Nat Genet	Loci at chromosomes 13, 19 and 20 influence age at natural menopause.	Menopause (age at onset)	2,979 European ancestry female individuals	2,560 European ancestry female individuals	6p21.33	NR	rs494620-?	NR	5E-7		0.3	[0.18-0.42] years increase	Illumina [315418]	N
609	chr6_ssto_hap7	3172523	3172524	rs3130482	31879980	German CA	2019-12-26	Genet Epidemiol	Ordered multinomial regression for genetic association analysis of ordinal phenotypes at Biobank scale.	Hypertension	30,822 British ancestry normal blood pressure individuals, 25,242 British ancestry elevated blood pressure individuals, 50,461 British ancestry stage 1 hypertension individuals, 75,286 British ancestry stage 2 hypertension individuals, 3,754 British ancestry hypertension crisis individuals	NA	6p21.33	SLC44A4	rs3130482-?	NR	1E-10		0.03993774	NR unit increase	Affymetrix [464137]	N
609	chr6_ssto_hap7	3172762	3172763	rs2763981	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs2763981-T	NR	6E-27		0.0318493	[0.026-0.038] unit decrease	Affymetrix [319769] (imputed)	N
609	chr6_ssto_hap7	3172762	3172763	rs2763981	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs2763981-T	NR	3E-25		0.0308309	[0.025-0.037] unit decrease	Affymetrix [319769] (imputed)	N
609	chr6_ssto_hap7	3172762	3172763	rs2763981	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs2763981-T	NR	3E-8		0.0165328	[0.011-0.022] unit decrease	Affymetrix [321114] (imputed)	N
609	chr6_ssto_hap7	3172762	3172763	rs2763981	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	SLC44A4	rs2763981-T	NR	2E-27		0.0349933	[0.029-0.041] unit increase	Affymetrix [323123] (imputed)	N
609	chr6_ssto_hap7	3172762	3172763	rs2763981	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs2763981-T	NR	1E-24		0.0307655	[0.025-0.037] unit decrease	Affymetrix [321169] (imputed)	N
609	chr6_ssto_hap7	3172762	3172763	rs2763981	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	6p21.33	SLC44A4	rs2763981-A	NR	8E-14				Affymetrix, Illumina [NR] (imputed)	N
609	chr6_ssto_hap7	3172762	3172763	rs2763981	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	6p21.33	SLC44A4	rs2763981-A	NR	1E-18	(EA)			Affymetrix, Illumina [NR] (imputed)	N
609	chr6_ssto_hap7	3172762	3172763	rs2763981	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	6p21.33	SLC44A4	rs2763981-A	NR	3E-19	(EA)			Affymetrix, Illumina [NR] (imputed)	N
609	chr6_ssto_hap7	3172762	3172763	rs2763981	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	6p21.33	SLC44A4	rs2763981-A	NR	1E-14				Affymetrix, Illumina [NR] (imputed)	N
609	chr6_ssto_hap7	3172762	3172763	rs2763981	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	6p21.33	SLC44A4	rs2763981-A	NR	6E-14	(EA)	0.021	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
609	chr6_ssto_hap7	3172762	3172763	rs2763981	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	6p21.33	SLC44A4	rs2763981-A	NR	1E-10		0.015	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
609	chr6_ssto_hap7	3172762	3172763	rs2763981	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	6p21.33	SLC44A4	rs2763981-A	NR	4E-6		0.012	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
609	chr6_ssto_hap7	3172762	3172763	rs2763981	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	6p21.33	SLC44A4	rs2763981-A	NR	2E-8	(EA)	0.021	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
609	chr6_ssto_hap7	3172762	3172763	rs2763981	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	6p21.33	SLC44A4	rs2763981-A	NR	5E-11				Affymetrix, Illumina [NR] (imputed)	N
609	chr6_ssto_hap7	3172762	3172763	rs2763981	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	6p21.33	SLC44A4	rs2763981-A	NR	3E-11	(EA)			Affymetrix, Illumina [NR] (imputed)	N
609	chr6_ssto_hap7	3172762	3172763	rs2763981	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	6p21.33	SLC44A4	rs2763981-A	NR	7E-12				Affymetrix, Illumina [NR] (imputed)	N
609	chr6_ssto_hap7	3172762	3172763	rs2763981	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	6p21.33	SLC44A4	rs2763981-A	NR	4E-12	(EA)			Affymetrix, Illumina [NR] (imputed)	N
609	chr6_ssto_hap7	3172762	3172763	rs2763981	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	6p21.33	SLC44A4	rs2763981-A	NR	6E-9	(EA)	1.145	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
609	chr6_ssto_hap7	3172762	3172763	rs2763981	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	6p21.33	SLC44A4	rs2763981-A	NR	3E-9		1.01	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
609	chr6_ssto_hap7	3172762	3172763	rs2763981	30670697	Kilpelainen TO	2019-01-22	Nat Commun	Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity.	Triglycerides x physical activity interaction (2df test)	7,294 African American inactive individuals, 12,832 African American active individuals, 1,352 Asian ancestry inactive individuals, 3,049 Asian ancestry active individuals, 20,622 European ancestry inactive individuals, 51,480 European ancestry active individuals, 2,166 Hispanic or Latin American inactive individuals, 3,486 Hispanic or Latin American active individuals	580 African American inactive individuals, 1,540 African American active individuals, 1,217 South African Black ancestry inactive individuals, 389 South African Black ancestry active individuals, 765 East Asian ancestry inactive individuals, 1,814 East Asian ancestry active individuals,  724 South Asian ancestry inactive individuals, 1,424 South Asian ancestry active individuals, 32,456 European ancestry inactive individuals, 49,510 European ancestry active individuals, 2,619 Hispanic inactive individuals, 8,803 Hispanic active individuals	6p21.33	NR	rs2763981-A	0.7045	4E-14	(EA)			Affymetrix, Illumina [at least 2500000] (imputed)	N
609	chr6_ssto_hap7	3172762	3172763	rs2763981	28334935	Raffield LM	2017-05-15	Hum Mol Genet	Genome-wide association study of iron traits and relation to diabetes in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL): potential genomic intersection of iron and glucose regulation?	Iron status biomarkers (total iron binding capacity)	12,586 Hispanic/Latino individuals	NA	6p21.33	SLC44A4	rs2763981-T	NR	8E-7		0.124	[0.075-0.173] unit decrease	Illumina [27700000] (imputed)	N
609	chr6_ssto_hap7	3173156	3173157	rs9267653	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs9267653-T	NR	9E-9		0.0178718	[0.012-0.024] unit decrease	Affymetrix [319769] (imputed)	N
609	chr6_ssto_hap7	3173156	3173157	rs9267653	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs9267653-T	NR	1E-8		0.0176946	[0.012-0.024] unit decrease	Affymetrix [319769] (imputed)	N
609	chr6_ssto_hap7	3173156	3173157	rs9267653	26423011	Wain LV	2015-09-27	Lancet Respir Med	Novel insights into the genetics of smoking behaviour, lung function, and chronic obstructive pulmonary disease (UK BiLEVE): a genetic association study in UK Biobank.	Lung function (low FEV1 vs high FEV1)	19,493 European ancestry individuals with low FEV1 measurements, 9,808 European ancestry individuals with high FEV1 measurements	NA	6p21.33	SLC44A4	rs9267653-C	NR	4E-9		0.124	[0.083-0.165] unit increase	Affymetrix [28509962] (imputed)	N
609	chr6_ssto_hap7	3173196	3173197	rs553108	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls	NA	6p21.33	SLC44A4	rs553108-A	0.418103	2E-10		0.0516698	[0.036-0.068] unit decrease	Affymetrix [7288503] (imputed)	N
609	chr6_ssto_hap7	3173196	3173197	rs553108	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Ease of getting up in the morning	385,949 European ancestry individuals	NA	6p21.33	NR	rs553108-A	0.4159	3E-8		0.0097	[0.0062-0.0132] unit increase	Affymetrix, Illumina [10862568] (imputed)	N
609	chr6_ssto_hap7	3173218	3173219	rs501942	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	6p21.33	NR	rs501942-T	0.09	3E-19		1.26	[1.2-1.32]	Illumina [8468885] (imputed)	N
609	chr6_ssto_hap7	3173218	3173219	rs501942	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in ever smokers	23,223 European ancestry cases,  16,964 European ancestry controls	NA	6p21.33	SLC44A4	rs501942-T	0.101035865	3E-14		1.2034894	[1.147434239-1.262282973]	Illumina [10439017] (imputed)	N
609	chr6_ssto_hap7	3173218	3173219	rs501942	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	6p21.33	SLC44A4	rs501942-T	0.098642093	8E-19		1.1851386	[1.141406179-1.230546538]	Illumina [10439017] (imputed)	N
609	chr6_ssto_hap7	3173750	3173751	rs9267654	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs9267654-A	NR	2E-12		0.0251845	[0.018-0.032] unit decrease	Affymetrix [319769] (imputed)	N
609	chr6_ssto_hap7	3173750	3173751	rs9267654	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs9267654-A	NR	3E-12		0.0249577	[0.018-0.032] unit decrease	Affymetrix [319769] (imputed)	N
609	chr6_ssto_hap7	3173750	3173751	rs9267654	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs9267654-A	NR	4E-10		0.0223343	[0.015-0.029] unit increase	Affymetrix [321016] (imputed)	N
609	chr6_ssto_hap7	3174632	3174633	rs573098	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	SLC44A4	rs573098-A	NR	2E-20		0.0279205	[0.022-0.034] unit increase	Affymetrix [321016] (imputed)	N
609	chr6_ssto_hap7	3174632	3174633	rs573098	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p21.33	SLC44A4	rs573098-A	NR	1E-9		0.0200634	[0.014-0.027] unit decrease	Affymetrix [323858] (imputed)	N
609	chr6_ssto_hap7	3174632	3174633	rs573098	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	6p21.33	NR	rs573098-T	0.679422	2E-12		0.0509102	[0.037-0.065] unit decrease	Affymetrix [17914406] (imputed)	N
609	chr6_ssto_hap7	3175340	3175341	rs12661281	25629512	Cheng CY	2015-01-28	Nat Commun	New loci and coding variants confer risk for age-related macular degeneration in East Asians.	Exudative age-related macular degeneration	2,119 East Asian ancestry cases, 5,691 East Asian ancestry controls	4,226 East Asian ancestry cases, 10,289 East Asian ancestry controls	6p21.33	SLC44A4	rs12661281-?	NR	1E-11		1.27	[NR]	Illumina [4471719] (imputed)	N
609	chr6_ssto_hap7	3176666	3176667	rs2736428	20421499	Levy D	2010-04-26	Proc Natl Acad Sci U S A	Genome-wide association identifies OBFC1 as a locus involved in human leukocyte telomere biology.	Telomere length	3,417 European ancestry individuals	1,893 African American and European ancestry individuals, 2,876 European ancestry individuals	6p21.33	SLC44A4	rs2736428-T	NR	3E-6		0.05	[0.03-0.07] kb increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
609	chr6_ssto_hap7	3178727	3178728	rs9267658	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6p21.33		rs9267658-T	0.1428	5E-12		0.0138	[0.0099-0.0177] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
609	chr6_ssto_hap7	3178815	3178816	rs114400264	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		SLC44A4	rs114400264-?	NR	5E-9	(male)	2.81252	[NR] unit decrease	Affymetrix [NR] (imputed)	N
609	chr6_ssto_hap7	3178976	3178977	rs9267659	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	6p21.33	SLC44A4	rs9267659-A	0.2004	4E-11		0.079	[0.056-0.102] unit increase	NR [7784415] (imputed)	N
609	chr6_ssto_hap7	3179642	3179643	rs114951054	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		EHMT2-AS1	rs114951054-?	NR	2E-9	(male)	2.96479	[NR] unit decrease	Affymetrix [NR] (imputed)	N
609	chr6_ssto_hap7	3179754	3179755	rs605203	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	6p21.33	NR	rs605203-A	0.62	4E-43		0.025	[0.021-0.029] unit increase	Affymetrix [2446094] (imputed)	N
609	chr6_ssto_hap7	3179754	3179755	rs605203	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	6p21.33	NR	rs605203-A	0.62	5E-8				Affymetrix [2446094] (imputed)	N
609	chr6_ssto_hap7	3180160	3180161	rs116369005	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	6p21.33	SLC44A4, EHMT2-AS1	rs116369005-C	0.021645	3E-10		0.052029066	[0.036-0.068] unit increase	Affymetrix [93095623] (imputed)	N
609	chr6_ssto_hap7	3180378	3180379	rs41267086	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C4A;C4B	5,353 Icelandic ancestry individuals	NA	6p21.33		rs41267086-A	0.09194	2E-44		0.435404	[0.37-0.5] unit decrease	Illumina [7506463] (imputed)	N
609	chr6_ssto_hap7	3180378	3180379	rs41267086	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.33	NR	rs41267086-?	NR	6E-12				Affymetrix [~ 8270000] (imputed)	N
609	chr6_ssto_hap7	3180962	3180963	rs589428	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI in non-smokers	75,379 European ancestry women, 45,811 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	6p21.33	EHMT2	rs589428-G	0.651	2E-10	(EA)	0.016	[0.01-0.022] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
609	chr6_ssto_hap7	3180962	3180963	rs589428	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	6p21.33	EHMT2	rs589428-G	0.65	1E-17	(EA)	0.024	[0.018-0.03] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
609	chr6_ssto_hap7	3181182	3181183	rs41267090	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p21.33	EHMT2	rs41267090-T	0.05	8E-7	(EA)	2.82	[1.84-4.33]	Illumina [up to 547389]	N
609	chr6_ssto_hap7	3183050	3183051	rs74434374	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NCR3	5,364 Icelandic ancestry individuals	NA	6p21.33		rs74434374-A	0.07046	4E-24		0.354873	[0.29-0.42] unit decrease	Illumina [7506463] (imputed)	N
609	chr6_ssto_hap7	3183976	3183977	rs652888	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	EHMT2	rs652888-G	NR	3E-10		0.0207108	[0.014-0.027] unit decrease	Affymetrix [319769] (imputed)	N
609	chr6_ssto_hap7	3183976	3183977	rs652888	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	EHMT2	rs652888-G	NR	1E-9		0.0200442	[0.014-0.027] unit decrease	Affymetrix [319769] (imputed)	N
609	chr6_ssto_hap7	3183976	3183977	rs652888	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	EHMT2	rs652888-G	NR	1E-9		0.02033	[0.014-0.027] unit decrease	Affymetrix [321169] (imputed)	N
609	chr6_ssto_hap7	3183976	3183977	rs652888	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p21.33	EHMT2	rs652888-G	NR	2E-8		0.0206131	[0.013-0.028] unit decrease	Affymetrix [323858] (imputed)	N
609	chr6_ssto_hap7	3183976	3183977	rs652888	27157822	Hallberg P	2016-05-03	Lancet Diabetes Endocrinol	Genetic variants associated with antithyroid drug-induced agranulocytosis: a genome-wide association study in a European population.	Anti-thyroid drug induced agranulocytosis	38 European ancestry cases, 1 case, 5,170 European ancestry controls	NA	6p21.33	EHMT2	rs652888-?	NR	2E-11		4.73	[3.00-7.44]	Illumina [9380034] (imputed)	N
609	chr6_ssto_hap7	3183976	3183977	rs652888	25802187	Jiang DK	2015-04-28	Hepatology	Genetic variants in five novel loci including CFB and CD40 predispose to chronic hepatitis B.	Chronic hepatitis B infection	2,514 Chinese ancestry cases, 1,130 Chinese ancestry controls	6,600 Chinese ancestry cases, 8,127 Chinese ancestry controls	6p21.33	EHMT2	rs652888-G	0.24	1E-6		1.14	[1.08-1.19]	Illumina [3680900] (imputed)	N
609	chr6_ssto_hap7	3183976	3183977	rs652888	23760081	Kim YJ	2013-06-10	Hum Mol Genet	A genome-wide association study identified new variants associated with the risk of chronic hepatitis B.	Chronic hepatitis B infection	400 Korean ancestry cases, 1,000 Korean ancestry controls	971 Korean ancestry cases, 1,938 Korean ancestry controls	6p21.33	EHMT2	rs652888-?	NR	7E-13		1.38	[1.22-1.57]	Illumina [719265]	N
609	chr6_ssto_hap7	3183976	3183977	rs652888	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.33	EHMT2	rs652888-C	0.2021	3E-46		2.71	[NR]	Illumina [242824]	N
609	chr6_ssto_hap7	3184211	3184212	rs2844458	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	EHMT2	rs2844458-A	NR	5E-9		0.0178304	[0.012-0.024] unit increase	Affymetrix [319769] (imputed)	N
609	chr6_ssto_hap7	3184211	3184212	rs2844458	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	EHMT2	rs2844458-A	NR	3E-8		0.0170038	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
609	chr6_ssto_hap7	3188812	3188813	rs486416	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	6p21.33		rs486416-A	0.6376	6E-9		0.013	[0.0091-0.0169] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
609	chr6_ssto_hap7	3188812	3188813	rs486416	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	6p21.33	EHMT2	rs486416-G	0.34730000000000005	1E-9		1.0203034		Affymetrix [11880941] (imputed)	N
609	chr6_ssto_hap7	3214476	3214477	rs685031	30104761	Zhou W	2018-08-13	Nat Genet	Efficiently controlling for case-control imbalance and sample relatedness in large-scale genetic association studies.	Coronary artery disease	31,355 European ancestry cases, 377,103 European ancestry controls	NA	6p21.33	C2	rs685031-A	0.389	9E-9				Affymetrix [28000000] (imputed)	N
609	chr6_ssto_hap7	3214476	3214477	rs685031	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	6p21.33	C2	rs685031-A	0.646	5E-10		0.043	[0.029-0.057] unit increase	Affymetrix [7947838] (imputed)	N
609	chr6_ssto_hap7	3214769	3214770	rs2844452	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	C2	rs2844452-G	NR	6E-12		0.0195783	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
609	chr6_ssto_hap7	3214769	3214770	rs2844452	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	C2	rs2844452-G	NR	6E-11		0.0206929	[0.015-0.027] unit increase	Affymetrix [323858] (imputed)	N
609	chr6_ssto_hap7	3214769	3214770	rs2844452	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	C2	rs2844452-G	NR	4E-11		0.0187691	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
609	chr6_ssto_hap7	3214769	3214770	rs2844452	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	C2	rs2844452-G	NR	2E-9		0.0190129	[0.013-0.025] unit increase	Affymetrix [127266] (imputed)	N
609	chr6_ssto_hap7	3216437	3216438	rs9267673	29185836	Chen MH	2017-11-29	Platelets	Exome-chip meta-analysis identifies association between variation in ANKRD26 and platelet aggregation.	Platelet aggregation	3,664 European ancestry individuals, 549 Old Order Amish (founder/genetic isolate) individuals	1,184 European ancestry individuals, 613 African American individuals	6p21.33	C2	rs9267673-T	0.114	7E-6	(collagen 1)	0.173	[0.097-0.249] unit decrease	Illumina [129094]	N
609	chr6_ssto_hap7	3216437	3216438	rs9267673	21105107	Clifford RJ	2010-12-01	Hepatology	Genetic variations at loci involved in the immune response are risk factors for hepatocellular carcinoma.	Hepatocellular carcinoma	180 Korean ancestry cases, 271 Korean ancestry controls	206 Korean ancestry cases, 416 East Asian ancestry controls,	6p21.33	C2	rs9267673-?	0.08	2E-6		1.97	[1.47-2.64]	Affymetrix [658897]	N
609	chr6_ssto_hap7	3216715	3216716	rs644045	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	6p21.33	C2	rs644045-A	0.3528	3E-13		0.0413	[0.03-0.052] unit decrease	Affymetrix [at least 7947838] (imputed)	N
609	chr6_ssto_hap7	3216715	3216716	rs644045	28881265	Sobalska-Kwapis M	2017-09-01	Eur J Obstet Gynecol Reprod Biol	New variants near RHOJ and C2, HLA-DRA region and susceptibility to endometriosis in the Polish population-The genome-wide association study.	Endometriosis	171 European ancestry cases, 2,934 European ancestry controls	NA	6p21.33	C2, LOC101929163, HLA-DRA	rs644045-T	0.2853	2E-8		1.955	[1.541-2.48]	Illumina [274400]	N
609	chr6_ssto_hap7	3217580	3217581	rs3130682	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	6p21.33	C2	rs3130682-T	NR	1E-16		0.0630215	[0.048-0.078] unit decrease	Illumina [13520550] (imputed)	N
609	chr6_ssto_hap7	3218687	3218688	rs3128759	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	153,512 East Asian ancestry individuals	NA	6p21.33		rs3128759-T	0.915106	7E-17		0.0465594	[0.036-0.058] unit increase	Illumina [13479135] (imputed)	N
609	chr6_ssto_hap7	3220017	3220018	rs115009784	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL15	5,365 Icelandic ancestry individuals	NA	6p21.33		rs115009784-A	0.04844	1E-13		0.324224	[0.24-0.41] unit decrease	Illumina [7506463] (imputed)	N
609	chr6_ssto_hap7	3221125	3221126	rs3130683	28714975	Nelson CP	2017-07-17	Nat Genet	Association analyses based on false discovery rate implicate new loci for coronary artery disease.	Coronary artery disease (myocardial infarction, percutaneous transluminal coronary angioplasty, coronary artery bypass grafting, angina or chromic ischemic heart disease)	18,467 European and unknown ancestry cases, 45,264 European and unknown ancestry controls	57,347 European and unknown ancestry cases, 219,521 European and unknown ancestry controls	6p21.33	C2	rs3130683-T	0.86	3E-8		1.08	[1.05-1.11]	Affymetrix [9149595] (imputed)	N
609	chr6_ssto_hap7	3225242	3225243	rs497309	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in diabetes	70,762 European ancestry individuals, 20,967 African American individuals	NA	6p21.33	C2	rs497309-A	0.902	5E-12		1.009	[0.72-1.3] unit increase	Affymetrix [NR] (imputed)	N
609	chr6_ssto_hap7	3225399	3225400	rs9267677	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	6p21.33	Intergenic	rs9267677-T	0.8962	7E-16	(MTAG)	0.0218	[0.017-0.027] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
609	chr6_ssto_hap7	3225399	3225400	rs9267677	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	6p21.33		rs9267677-T	0.9029	4E-14		0.018	[0.013-0.023] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
609	chr6_ssto_hap7	3225399	3225400	rs9267677	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6p21.33	Intergenic	rs9267677-T	0.9029	8E-18	(MTAG)	0.0191	[0.015-0.023] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
609	chr6_ssto_hap7	3225399	3225400	rs9267677	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	6p21.33	Intergenic	rs9267677-T	0.9038	2E-9	(MTAG)	0.0233	[0.016-0.031] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
609	chr6_ssto_hap7	3226702	3226703	rs2734335	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	C2	rs2734335-A	NR	2E-8		0.0157901	[0.01-0.021] unit decrease	Affymetrix [321016] (imputed)	N
609	chr6_ssto_hap7	3227114	3227115	rs556679	33893285	Guindo-Martinez M	2021-04-23	Nat Commun	The impact of non-additive genetic associations on age-related complex diseases.	Age-related macular degeneration	3,685 European ancestry cases, 52,952 European ancestry controls	NA	6p21.33		rs556679-T	0.1113519	5E-21		0.66		Affymetrix [15377238] (imputed)	N
609	chr6_ssto_hap7	3228732	3228733	rs7746553	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	6p21.33	C2	rs7746553-C	0.848517	5E-8		0.0160902	[0.01-0.022] unit increase	NR [16516521] (imputed)	N
609	chr6_ssto_hap7	3229978	3229979	rs9283893	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	SKIV2L, C2, XXbac-BPG116M5.17, NELFE, MIR1236, DXO, STK19	rs9283893-A	0.0446339	1E-32	(Neutrophil collagenase)	1.199	[1.01-1.39] unit increase	Affymetrix [509946]	N
609	chr6_ssto_hap7	3233463	3233464	rs184265581	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	6p21.33	NR	rs184265581-C	0.012356999999999951	6E-27		0.132322	[0.11-0.16] unit increase	Affymetrix [16580851] (imputed)	N
609	chr6_ssto_hap7	3236513	3236514	rs9332739	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CFB	5,365 Icelandic ancestry individuals	NA	6p21.33		rs9332739-C	0.0495	8E-121		0.960939	[0.88-1.04] unit decrease	Illumina [7506463] (imputed)	N
609	chr6_ssto_hap7	3236513	3236514	rs9332739	22705344	Sobrin L	2012-06-15	Ophthalmology	Heritability and genome-wide association study to assess genetic differences between advanced age-related macular degeneration subtypes.	Age-related macular degeneration (geographic atrophy)	819 European ancestry geographic atrophy cases, 4,134 European ancestry controls	NA	6p21.33	C2	rs9332739-?	0.955	1E-6		2.63	[1.79-3.85]	Affymetrix, Illumina [6036699] (imputed)	N
609	chr6_ssto_hap7	3236513	3236514	rs9332739	22705344	Sobrin L	2012-06-15	Ophthalmology	Heritability and genome-wide association study to assess genetic differences between advanced age-related macular degeneration subtypes.	Age-related macular degeneration (choroidal neovascularisation)	1,775 European ancestry choroidal neovascularization cases, 4,134 European ancestry controls	4,515 European and unknown ancestry choroidal neovascularization cases, 15,240 European and unknown ancestry controls	6p21.33	C2	rs9332739-?	0.955	2E-8		2.08	[1.61-2.7]	Affymetrix, Illumina [6036699] (imputed)	N
609	chr6_ssto_hap7	3236513	3236514	rs9332739	21665990	Yu Y	2011-06-10	Hum Mol Genet	Common variants near FRK/COL10A1 and VEGFA are associated with advanced age-related macular degeneration.	Age-related macular degeneration	2,594 European ancestry cases, 4,134 European ancestry controls	5,640 European ancestry cases, 52,174 European ancestry controls	6p21.33	C2	rs9332739-?	0.96	2E-23		2.17	[NR]	Affymetrix [6036699] (imputed)	N
609	chr6_ssto_hap7	3237838	3237839	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ZNF276	5,363 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	6E-17		0.263299	[0.2-0.32] unit increase	Illumina [7506463] (imputed)	N
609	chr6_ssto_hap7	3237838	3237839	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ZAP70	5,357 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	2E-20		0.28156	[0.22-0.34] unit increase	Illumina [7506463] (imputed)	N
609	chr6_ssto_hap7	3237838	3237839	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein WIF1	5,349 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	4E-12		0.207313	[0.15-0.27] unit increase	Illumina [7506463] (imputed)	N
609	chr6_ssto_hap7	3237838	3237839	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein UTS2	5,348 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	2E-13		0.213721	[0.16-0.27] unit increase	Illumina [7506463] (imputed)	N
609	chr6_ssto_hap7	3237838	3237839	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TPM2	5,353 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	6E-19		0.271948	[0.21-0.33] unit increase	Illumina [7506463] (imputed)	N
609	chr6_ssto_hap7	3237838	3237839	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TMCC3	5,355 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	6E-19		0.272099	[0.21-0.33] unit increase	Illumina [7506463] (imputed)	N
609	chr6_ssto_hap7	3237838	3237839	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SYNCRIP	5,354 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	3E-16		0.244214	[0.19-0.3] unit increase	Illumina [7506463] (imputed)	N
609	chr6_ssto_hap7	3237838	3237839	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RPS10	5,348 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	8E-14		0.223731	[0.16-0.28] unit increase	Illumina [7506463] (imputed)	N
609	chr6_ssto_hap7	3237838	3237839	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RNF43	5,340 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	2E-12		0.20687	[0.15-0.26] unit increase	Illumina [7506463] (imputed)	N
609	chr6_ssto_hap7	3237838	3237839	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RGS8	5,356 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	5E-18		0.263545	[0.2-0.32] unit increase	Illumina [7506463] (imputed)	N
609	chr6_ssto_hap7	3237838	3237839	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RAD51	5,354 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	2E-17		0.254863	[0.2-0.31] unit increase	Illumina [7506463] (imputed)	N
609	chr6_ssto_hap7	3237838	3237839	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RAB5C	5,347 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	8E-15		0.22726	[0.17-0.28] unit increase	Illumina [7506463] (imputed)	N
609	chr6_ssto_hap7	3237838	3237839	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RAB17	5,352 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	2E-16		0.244122	[0.19-0.3] unit increase	Illumina [7506463] (imputed)	N
609	chr6_ssto_hap7	3237838	3237839	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PTPN1	5,343 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	2E-12		0.199884	[0.14-0.26] unit increase	Illumina [7506463] (imputed)	N
609	chr6_ssto_hap7	3237838	3237839	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein POLR1C	5,352 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	4E-15		0.236472	[0.18-0.3] unit increase	Illumina [7506463] (imputed)	N
609	chr6_ssto_hap7	3237838	3237839	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PIK3CG	5,349 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	3E-18		0.254662	[0.2-0.31] unit increase	Illumina [7506463] (imputed)	N
609	chr6_ssto_hap7	3237838	3237839	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PCDHB4	5,352 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	1E-14		0.230172	[0.17-0.29] unit increase	Illumina [7506463] (imputed)	N
609	chr6_ssto_hap7	3237838	3237839	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PCDHB14	5,352 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	9E-17		0.252266	[0.19-0.31] unit increase	Illumina [7506463] (imputed)	N
609	chr6_ssto_hap7	3237838	3237839	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NRXN3	5,346 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	3E-14		0.227034	[0.17-0.29] unit increase	Illumina [7506463] (imputed)	N
609	chr6_ssto_hap7	3237838	3237839	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NDUFB4	5,364 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	9E-14		0.235159	[0.17-0.3] unit increase	Illumina [7506463] (imputed)	N
609	chr6_ssto_hap7	3237838	3237839	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MST1R	5,341 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	7E-16		0.227077	[0.17-0.28] unit increase	Illumina [7506463] (imputed)	N
609	chr6_ssto_hap7	3237838	3237839	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MOCS3	5,351 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	8E-15		0.232526	[0.17-0.29] unit increase	Illumina [7506463] (imputed)	N
609	chr6_ssto_hap7	3237838	3237839	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein KLK6	5,348 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	1E-15		0.225461	[0.17-0.28] unit increase	Illumina [7506463] (imputed)	N
609	chr6_ssto_hap7	3237838	3237839	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein KLK12	5,359 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	1E-19		0.280976	[0.22-0.34] unit increase	Illumina [7506463] (imputed)	N
609	chr6_ssto_hap7	3237838	3237839	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL18R1	5,351 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	5E-12		0.21193	[0.15-0.27] unit increase	Illumina [7506463] (imputed)	N
609	chr6_ssto_hap7	3237838	3237839	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL10RA	5,353 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	1E-13		0.230011	[0.17-0.29] unit increase	Illumina [7506463] (imputed)	N
609	chr6_ssto_hap7	3237838	3237839	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IGFL3	5,350 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	5E-15		0.237003	[0.18-0.3] unit increase	Illumina [7506463] (imputed)	N
609	chr6_ssto_hap7	3237838	3237839	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GBP6	5,348 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	5E-12		0.206328	[0.15-0.26] unit increase	Illumina [7506463] (imputed)	N
609	chr6_ssto_hap7	3237838	3237839	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FRZB	5,350 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	5E-13		0.207917	[0.15-0.26] unit increase	Illumina [7506463] (imputed)	N
609	chr6_ssto_hap7	3237838	3237839	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FCER1A	5,348 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	1E-19		0.272221	[0.21-0.33] unit increase	Illumina [7506463] (imputed)	N
609	chr6_ssto_hap7	3237838	3237839	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DSG1	5,349 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	4E-16		0.242273	[0.18-0.3] unit increase	Illumina [7506463] (imputed)	N
609	chr6_ssto_hap7	3237838	3237839	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DCUN1D5	5,344 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	2E-13		0.212735	[0.16-0.27] unit increase	Illumina [7506463] (imputed)	N
609	chr6_ssto_hap7	3237838	3237839	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CRABP1	5,340 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	4E-13		0.209239	[0.15-0.27] unit increase	Illumina [7506463] (imputed)	N
609	chr6_ssto_hap7	3237838	3237839	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CLEC12B	5,357 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	4E-18		0.267882	[0.21-0.33] unit increase	Illumina [7506463] (imputed)	N
609	chr6_ssto_hap7	3237838	3237839	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CDK5;CDK5R1	5,339 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	2E-15		0.225529	[0.17-0.28] unit increase	Illumina [7506463] (imputed)	N
609	chr6_ssto_hap7	3237838	3237839	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CCL1	5,354 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	1E-15		0.242251	[0.18-0.3] unit increase	Illumina [7506463] (imputed)	N
609	chr6_ssto_hap7	3237838	3237839	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CA4	5,356 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	2E-13		0.225651	[0.17-0.29] unit increase	Illumina [7506463] (imputed)	N
609	chr6_ssto_hap7	3237838	3237839	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C2orf40	5,353 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	3E-12		0.217148	[0.16-0.28] unit increase	Illumina [7506463] (imputed)	N
609	chr6_ssto_hap7	3237838	3237839	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein BCL2L10	5,355 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	9E-14		0.231319	[0.17-0.29] unit increase	Illumina [7506463] (imputed)	N
609	chr6_ssto_hap7	3237838	3237839	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein BCL2L1	5,350 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	1E-17		0.257737	[0.2-0.32] unit increase	Illumina [7506463] (imputed)	N
609	chr6_ssto_hap7	3237838	3237839	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein AZGP1	5,362 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	1E-19		0.281057	[0.22-0.34] unit increase	Illumina [7506463] (imputed)	N
609	chr6_ssto_hap7	3237838	3237839	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ANXA10	5,345 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	6E-13		0.218401	[0.16-0.28] unit increase	Illumina [7506463] (imputed)	N
609	chr6_ssto_hap7	3237838	3237839	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein AKT3	5,346 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	2E-14		0.217044	[0.16-0.27] unit increase	Illumina [7506463] (imputed)	N
609	chr6_ssto_hap7	3237838	3237839	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein AHSA1	5,351 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	2E-15		0.242628	[0.18-0.3] unit increase	Illumina [7506463] (imputed)	N
609	chr6_ssto_hap7	3237838	3237839	rs1042663	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ADGRE5	5,359 Icelandic ancestry individuals	NA	6p21.33		rs1042663-A	0.09989	3E-18		0.271861	[0.21-0.33] unit increase	Illumina [7506463] (imputed)	N
609	chr6_ssto_hap7	3237838	3237839	rs1042663	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs1042663-A	0.095	5E-18	(ER membrane protein complex subunit 4, EMC4.13516.46.3)	0.36	[0.28-0.44] unit decrease	Affymetrix [10572788] (imputed)	N
609	chr6_ssto_hap7	3238718	3238719	rs9380272	20385819	Chen W	2010-04-12	Proc Natl Acad Sci U S A	Genetic variants near TIMP3 and high-density lipoprotein-associated loci influence susceptibility to age-related macular degeneration.	Age-related macular degeneration	2,157 European ancestry cases, 1,150 European ancestry controls	7,892 European ancestry cases, 5,998 European ancestry controls, 678 Japanese ancestry cases, 336 Japanese ancestry controls	6p21.33	CFB, C2	rs9380272-A	0.012	2E-8		4.31	[2.76-6.87]	Illumina [~ 2500000] (imputed)	N
609	chr6_ssto_hap7	3239536	3239537	rs78593564	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PSMD11	5,350 Icelandic ancestry individuals	NA	6p21.33		rs78593564-A	0.05083	8E-12		0.281426	[0.2-0.36] unit decrease	Illumina [7506463] (imputed)	N
609	chr6_ssto_hap7	3239536	3239537	rs78593564	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL36A	5,364 Icelandic ancestry individuals	NA	6p21.33		rs78593564-A	0.05083	2E-64		0.72184	[0.64-0.81] unit decrease	Illumina [7506463] (imputed)	N
609	chr6_ssto_hap7	3239536	3239537	rs78593564	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL21	5,363 Icelandic ancestry individuals	NA	6p21.33		rs78593564-A	0.05083	3E-50		0.636403	[0.55-0.72] unit decrease	Illumina [7506463] (imputed)	N
609	chr6_ssto_hap7	3239536	3239537	rs78593564	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	6p21.33	HLA region	rs78593564-?	NR	3E-8	(EA)			Affymetrix, Illumina [10537485] (imputed)	N
609	chr6_ssto_hap7	3239536	3239537	rs78593564	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	6p21.33	HLA region	rs78593564-?	NR	1E-8				Affymetrix, Illumina [10537485] (imputed)	N
609	chr6_ssto_hap7	3240545	3240546	rs2293751	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	C2, CFB	rs2293751-A	NR	2E-15		0.0227001	[0.017-0.028] unit increase	Affymetrix [321169] (imputed)	N
609	chr6_ssto_hap7	3240545	3240546	rs2293751	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.33	C2, C2-AS1, CFB, DXO, EHMT2, MIR1236, NELFE, NEU1, SKIV2L, SLC44A4, STK19, ZBTB12	rs2293751-A		3E-8		1.06	[1.04-1.08]	Affymetrix, Illumina [NR]	N
609	chr6_ssto_hap7	3241469	3241470	rs497239	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ZAP70	5,359 Icelandic ancestry individuals	NA	6p21.33		rs497239-C	0.09998	3E-12		0.217124	[0.16-0.28] unit increase	Illumina [7506463] (imputed)	N
609	chr6_ssto_hap7	3241469	3241470	rs497239	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein KLRC3	5,354 Icelandic ancestry individuals	NA	6p21.33		rs497239-C	0.09998	1E-32		0.360834	[0.3-0.42] unit increase	Illumina [7506463] (imputed)	N
609	chr6_ssto_hap7	3241469	3241470	rs497239	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ENTPD3	5,332 Icelandic ancestry individuals	NA	6p21.33		rs497239-C	0.09998	3E-13		0.205425	[0.15-0.26] unit increase	Illumina [7506463] (imputed)	N
609	chr6_ssto_hap7	3243647	3243648	rs547154	32843070	Winkler TW	2020-08-26	BMC Med Genomics	Genome-wide association meta-analysis for early age-related macular degeneration highlights novel loci and insights for advanced disease.	Early age-related macular degeneration	14,034 European ancestry cases, 91,214 European ancestry controls	NA	6p21.33	C2	rs547154-G	0.91	1E-18		1.24	[1.19-1.29]	Affymetrix, Illumina [11702853] (imputed)	N
609	chr6_ssto_hap7	3246733	3246734	rs4151667	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	CFB	rs4151667-A	0.042	6E-53	(Complement factor B, CFB.4129.72.1)	0.91	[0.79-1.03] unit decrease	Affymetrix [10572788] (imputed)	N
609	chr6_ssto_hap7	3246888	3246889	rs12614	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CFB	5,365 Icelandic ancestry individuals	NA	6p21.33		rs12614-T	0.07594	2E-11		0.239951	[0.17-0.31] unit decrease	Illumina [7506463] (imputed)	N
609	chr6_ssto_hap7	3246888	3246889	rs12614	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	CFB	rs12614-T	0.087	7E-25	(Gremlin-1, GREM1.4449.67.3)	0.44	[0.36-0.52] unit increase	Affymetrix [10572788] (imputed)	N
609	chr6_ssto_hap7	3246888	3246889	rs12614	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	CFB	rs12614-T	0.087	1E-283	(Neutrophil collagenase, MMP8.2954.56.2)	1.33	[1.25-1.41] unit increase	Affymetrix [10572788] (imputed)	N
609	chr6_ssto_hap7	3246888	3246889	rs12614	25802187	Jiang DK	2015-04-28	Hepatology	Genetic variants in five novel loci including CFB and CD40 predispose to chronic hepatitis B.	Chronic hepatitis B infection	2,514 Chinese ancestry cases, 1,130 Chinese ancestry controls	6,600 Chinese ancestry cases, 8,127 Chinese ancestry controls	6p21.33	CFB	rs12614-T	0.92	1E-34		1.89	[1.69-2.08]	Illumina [3680900] (imputed)	N
609	chr6_ssto_hap7	3246889	3246890	rs641153	32492067	Ruffieux H	2020-06-03	PLoS Comput Biol	A fully joint Bayesian quantitative trait locus mapping of human protein abundance in plasma.	Protein quantitative trait loci	394 European ancestry individuals	548 European ancestry individuals	6p21.33	NR	rs641153-?	NR	4E-12	(Factor B)			Illumina [~ 4000000] (imputed)	N
609	chr6_ssto_hap7	3246889	3246890	rs641153	22705344	Sobrin L	2012-06-15	Ophthalmology	Heritability and genome-wide association study to assess genetic differences between advanced age-related macular degeneration subtypes.	Age-related macular degeneration (geographic atrophy)	819 European ancestry geographic atrophy cases, 4,134 European ancestry controls	NA	6p21.33	CFB	rs641153-?	0.899	2E-9		2.13	[1.69-2.7]	Affymetrix, Illumina [6036699] (imputed)	N
609	chr6_ssto_hap7	3246889	3246890	rs641153	22705344	Sobrin L	2012-06-15	Ophthalmology	Heritability and genome-wide association study to assess genetic differences between advanced age-related macular degeneration subtypes.	Age-related macular degeneration (choroidal neovascularisation)	1,775 European ancestry choroidal neovascularization cases, 4,134 European ancestry controls	4,515 European and unknown ancestry choroidal neovascularization cases, 15,240 European and unknown ancestry controls	6p21.33	CFB	rs641153-?	0.899	1E-17		2.22	[1.85-2.63]	Affymetrix, Illumina [6036699] (imputed)	N
609	chr6_ssto_hap7	3246889	3246890	rs641153	21665990	Yu Y	2011-06-10	Hum Mol Genet	Common variants near FRK/COL10A1 and VEGFA are associated with advanced age-related macular degeneration.	Age-related macular degeneration	2,594 European ancestry cases, 4,134 European ancestry controls	5,640 European ancestry cases, 52,174 European ancestry controls	6p21.33	CFB	rs641153-?	0.90	6E-31		1.85	[NR]	Affymetrix [6036699] (imputed)	N
609	chr6_ssto_hap7	3246889	3246890	rs641153	20385826	Neale BM	2010-04-12	Proc Natl Acad Sci U S A	Genome-wide association study of advanced age-related macular degeneration identifies a role of the hepatic lipase gene (LIPC).	Age-related macular degeneration	979 cases, 1,709 controls	868 European ancestry cases, 410 European ancestry controls, 4,921 cases, 3,824 controls	6p21.33	CFB, C2	rs641153-?	NR	2E-20				Affymetrix [632932]	N
609	chr6_ssto_hap7	3247644	3247645	rs1048709	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CFB	5,365 Icelandic ancestry individuals	NA	6p21.33		rs1048709-A	0.2856	2E-16		0.172241	[0.13-0.21] unit decrease	Illumina [7506463] (imputed)	N
609	chr6_ssto_hap7	3247644	3247645	rs1048709	31375628	Tengvall K	2019-08-02	Proc Natl Acad Sci U S A	Molecular mimicry between Anoctamin 2 and Epstein-Barr virus nuclear antigen 1 associates with multiple sclerosis risk.	Anti-anoctamin 2 antibody levels	11,936 European ancestry individuals	NA	6p21.33	NR	rs1048709-A	NR	3E-7		0.054	[0.029-0.079] unit increase	Illumina [615763]	N
609	chr6_ssto_hap7	3247853	3247854	rs4151669	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	DXO, C2, CFB, EHMT2, SLC44A4, EHMT2-AS1, ZBTB12, XXbac-BPG116M5.17, C2-AS1, NELFE, MIR1236, STK19, C4A	rs4151669-A	0.04112337	6E-28	(EA, Complement factor B)	1.17	[0.97-1.37] unit decrease	Affymetrix [509946]	N
609	chr6_ssto_hap7	3249109	3249110	rs537160	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	6p21.33	NR	rs537160-G	0.6394	3E-7		0.0063	[0.0039-0.0087] unit increase	NR [7666894] (imputed)	N
609	chr6_ssto_hap7	3249109	3249110	rs537160	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.33	XXbac-BPG116M5.17, CFB	rs537160-A	0.3352	9E-11		0.0478	[0.033-0.062] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
609	chr6_ssto_hap7	3249416	3249417	rs45600936	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	6p21.33	CFB	rs45600936-T	0.00839800000000002	4E-10		0.07604781	[0.052-0.1] unit decrease	Affymetrix [93095623] (imputed)	N
609	chr6_ssto_hap7	3249660	3249661	rs541862	29234017	Carayol J	2017-12-12	Nat Commun	Protein quantitative trait locus study in obesity during weight-loss identifies a leptin regulator.	Protein levels in obesity	494 European ancestry individuals	NA	6p21.33	NR	rs541862-?	NR	3E-11	(Factor B)	0.15	[0.1-0.2] unit increase	Illumina [4020654] (imputed)	N
609	chr6_ssto_hap7	3249660	3249661	rs541862	22694956	Cipriani V	2012-06-13	Hum Mol Genet	Genome-wide association study of age-related macular degeneration identifies associated variants in the TNXB-FKBPL-NOTCH4 region of chromosome 6p21.3.	Age-related macular degeneration	893 European ancestry cases, 2,199 European ancestry controls	1,411 European ancestry cases, 1,431 European ancestry controls	6p21.33	CFB	rs541862-T	0.99	9E-17		1.89	[1.61-2.17]	Illumina [2272849] (imputed)	N
609	chr6_ssto_hap7	3250249	3250250	rs4151657	24837172	Juyal G	2014-05-16	Gut	Genome-wide association scan in north Indians reveals three novel HLA-independent risk loci for ulcerative colitis.	Ulcerative colitis	603 North Indian ancestry cases, 622 North Indian ancestry controls	733 North Indian ancestry cases, 1,148 North Indian ancestry controls	6p21.33	CFB, BAT2, MSH5, HSPA1L, SLC44A4	rs4151657-G	0.29	5E-14		1.54	[1.38-1.73]	Illumina [480391]	N
609	chr6_ssto_hap7	3251173	3251174	rs4151659	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	CFB	rs4151659-G	0.013	2E-18	(ER membrane protein complex subunit 4, EMC4.13516.46.3)	0.94	[0.72-1.16] unit decrease	Affymetrix [10572788] (imputed)	N
609	chr6_ssto_hap7	3251569	3251570	rs1270942	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	2,018 European ancestry cases, 6,925 European ancestry controls	6p21.33	MHC class III	rs1270942-C		2E-165		2.28	[2.15-2.42]	Illumina [644674]	N
609	chr6_ssto_hap7	3251569	3251570	rs1270942	25936594	Tomer Y	2015-04-27	J Autoimmun	Genome wide identification of new genes and pathways in patients with both autoimmune thyroiditis and type 1 diabetes.	Type 1 diabetes and autoimmune thyroid diseases	346 European ancestry cases, 727 European ancestry controls	185 European ancestry cases, 340 European ancestry controls	6p21.33	BAT2, HSPA1L, CFB, TNXB, NOTCH4	rs1270942-C	NR	5E-25		3.0494		Illumina [514008]	N
609	chr6_ssto_hap7	3251612	3251613	rs4151671	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		AL645922.1	rs4151671-?	NR	2E-8	(male)	2.99493	[NR] unit decrease	Affymetrix [NR] (imputed)	N
609	chr6_ssto_hap7	3251612	3251613	rs4151671	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA		NR	rs4151671-C	0.94890625	7E-10	(IFNAR1, 6055_53_3)	0.3487593	[0.24-0.46] unit increase	Illumina [> 1000000] (imputed)	N
609	chr6_ssto_hap7	3251612	3251613	rs4151671	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA		NR	rs4151671-C	0.94890625	6E-23	(FTMT, 8048_9_3)	0.5590734	[0.45-0.67] unit decrease	Illumina [> 1000000] (imputed)	N
609	chr6_ssto_hap7	3251612	3251613	rs4151671	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA		NR	rs4151671-C	0.94890625	2E-49	(ISG15, 14148_2_3)	0.84025466	[0.73-0.95] unit increase	Illumina [> 1000000] (imputed)	N
609	chr6_ssto_hap7	3251612	3251613	rs4151671	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA		NR	rs4151671-C	0.94890625	2E-23	(DEFB119, 13455_10_3)	0.5583053	[0.45-0.67] unit decrease	Illumina [> 1000000] (imputed)	N
609	chr6_ssto_hap7	3251612	3251613	rs4151671	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA		NR	rs4151671-C	0.94890625	2E-14	(MICA, 2730_58_2)	0.4376745	[0.33-0.55] unit increase	Illumina [> 1000000] (imputed)	N
609	chr6_ssto_hap7	3251612	3251613	rs4151671	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA		NR	rs4151671-C	0.94890625	2E-126	(TNXB, 5698_60_3)	1.3120593	[1.21-1.41] unit increase	Illumina [> 1000000] (imputed)	N
609	chr6_ssto_hap7	3251612	3251613	rs4151671	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA		NR	rs4151671-C	0.94890625	1E-9	(IL15, 10795_32_3)	0.34537017	[0.23-0.46] unit increase	Illumina [> 1000000] (imputed)	N
609	chr6_ssto_hap7	3251612	3251613	rs4151671	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA		NR	rs4151671-C	0.94890625	1E-66	(CFB, 4129_72_1)	0.96344995	[0.86-1.07] unit increase	Illumina [> 1000000] (imputed)	N
609	chr6_ssto_hap7	3251612	3251613	rs4151671	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA		NR	rs4151671-C	0.94890625	1E-41	(C2, 3186_2_2)	0.78192717	[0.67-0.89] unit increase	Illumina [> 1000000] (imputed)	N
609	chr6_ssto_hap7	3252287	3252288	rs2072633	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	CFB	rs2072633-A	NR	2E-10		0.0180815	[0.013-0.024] unit decrease	Affymetrix [321169] (imputed)	N
609	chr6_ssto_hap7	3252287	3252288	rs2072633	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	6p21.33	C2, CFB, MIR1236, NELFE, SKIV2L	rs2072633-A	0.443	6E-13		0.0411	[0.03-0.052] unit decrease	NR [8041861] (imputed)	N
609	chr6_ssto_hap7	3252539	3252540	rs4151672	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		CFB	rs4151672-?	NR	2E-8	(male)	2.99497	[NR] unit decrease	Affymetrix [NR] (imputed)	N
609	chr6_ssto_hap7	3252626	3252627	rs522162	23577725	Naj AC	2013-05-01	Ann Hum Genet	Genetic factors in nonsmokers with age-related macular degeneration revealed through genome-wide gene-environment interaction analysis.	Age-related macular degeneration (extreme sampling)	720 European ancestry grade 5 cases, 513 European ancestry grade 1 controls	70 European ancestry grade 5 cases, 73 European ancestry grade 1 controls	6p21.33	RDBP, CFB, DKFZp779M0311	rs522162-?	0.93	3E-7		2.38	[1.69-3.33]	Affymetrix [2543887] (imputed)	N
609	chr6_ssto_hap7	3252626	3252627	rs522162	23577725	Naj AC	2013-05-01	Ann Hum Genet	Genetic factors in nonsmokers with age-related macular degeneration revealed through genome-wide gene-environment interaction analysis.	Age-related macular degeneration	1,207 European ancestry cases, 686 European ancestry controls	122 European ancestry cases, 86 European ancestry controls	6p21.33	RDBP, CFB, ATF6B, STK19	rs522162-?	0.93	2E-10		2.33	[1.82-3.03]	Affymetrix [2543887] (imputed)	N
609	chr6_ssto_hap7	3253396	3253397	rs550513	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	SKIV2L, CFB, NELFE, C2, C2-AS1, XXbac-BPG116M5.17, MIR1236	rs550513-T	0.07981928	1E-19	(Complement factor B)	0.702	[0.55-0.85] unit increase	Affymetrix [509946]	N
609	chr6_ssto_hap7	3253775	3253776	rs4151665	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs4151665-C	0.06	7E-15	(Beta-defensin 119, DEFB119.13455.10.3)	0.4	[0.3-0.5] unit increase	Affymetrix [10572788] (imputed)	N
609	chr6_ssto_hap7	3254184	3254185	rs2072632	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SPAG11B	5,366 Icelandic ancestry individuals	NA	6p21.33		rs2072632-A	0.2866	3E-45		0.290078	[0.25-0.33] unit decrease	Illumina [7506463] (imputed)	N
609	chr6_ssto_hap7	3254963	3254964	rs630379	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	NELFE	rs630379-A	NR	1E-14		0.0231756	[0.017-0.029] unit decrease	Affymetrix [319769] (imputed)	N
609	chr6_ssto_hap7	3254963	3254964	rs630379	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	NELFE	rs630379-A	NR	2E-13		0.0221378	[0.016-0.028] unit decrease	Affymetrix [319769] (imputed)	N
609	chr6_ssto_hap7	3254963	3254964	rs630379	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	NELFE	rs630379-A	NR	2E-23		0.0325922	[0.026-0.039] unit increase	Affymetrix [323123] (imputed)	N
609	chr6_ssto_hap7	3254963	3254964	rs630379	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	NELFE	rs630379-A	NR	5E-17		0.0254771	[0.02-0.031] unit decrease	Affymetrix [321169] (imputed)	N
609	chr6_ssto_hap7	3256423	3256423	rs35917342	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs35917342-AT	0.101	1E-203	(Neutrophil collagenase, MMP8.2954.56.2)	1.18	[1.1-1.26] unit increase	Affymetrix [10572788] (imputed)	N
609	chr6_ssto_hap7	3257036	3257037	rs9501161	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs9501161-A	0.086	1E-11	(Complement factor B, CFB.4129.72.1)	0.29	[0.21-0.37] unit decrease	Affymetrix [10572788] (imputed)	N
609	chr6_ssto_hap7	3258557	3258558	rs80082277	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	6p21.33	SKIV2L, NELFE, MIR1236	rs80082277-C	0.02	3E-8	(EA)	0.0536	[0.035-0.073] unit decrease	Affymetrix, Illumina [10537485] (imputed)	N
609	chr6_ssto_hap7	3260051	3260052	rs440454	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	6p21.33		rs440454-?	NR	5E-9		0.0056767	[0.0038-0.0076] unit decrease	NR [NR]	N
609	chr6_ssto_hap7	3260051	3260052	rs440454	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p21.33	SKIV2L	rs440454-A	NR	2E-10		0.0210807	[0.015-0.028] unit decrease	Affymetrix [323858] (imputed)	N
609	chr6_ssto_hap7	3261400	3261401	rs2280774	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	CYP21A2, NELFE, DXO, TNXB, C2, C2-AS1, XXbac-BPG116M5.17, CFB, MIR1236, SKIV2L, STK19, C4A, C4B, C4B-AS1, RNA5SP206	rs2280774-A	0.3705942	8E-29	(Complement C4b)	0.5048	[0.42-0.59] unit decrease	Affymetrix [509946]	N
609	chr6_ssto_hap7	3261400	3261401	rs2280774	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	CYP21A2, NELFE, DXO, TNXB, C2, C2-AS1, XXbac-BPG116M5.17, CFB, MIR1236, SKIV2L, STK19, C4A, C4B, C4B-AS1, RNA5SP206	rs2280774-A	0.3705942	8E-12	(EA, gp41 C34 peptide, HIV)	0.3064	[0.22-0.39] unit decrease	Affymetrix [509946]	N
609	chr6_ssto_hap7	3261508	3261509	rs419788	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	SKIV2L	rs419788-T	NR	3E-19		0.0298384	[0.023-0.036] unit decrease	Affymetrix [323858] (imputed)	N
609	chr6_ssto_hap7	3261508	3261509	rs419788	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	SKIV2L	rs419788-T	NR	1E-16		0.0274934	[0.021-0.034] unit decrease	Affymetrix [127266] (imputed)	N
609	chr6_ssto_hap7	3262517	3262518	rs35664695	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p21.33	NR	rs35664695-?	NR	6E-17		0.1764	[0.14-0.22] unit increase	Illumina [at least 560000] (imputed)	N
609	chr6_ssto_hap7	3263060	3263061	rs2734331	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	6p21.33	SKIV2L	rs2734331-A	0.97	7E-13	(X-11470)	0.073	[0.053-0.093] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
609	chr6_ssto_hap7	3263150	3263151	rs592229	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	6p21.33		rs592229-G	0.486	2E-28		0.12	[0.1-0.14] % increase	Affymetrix [NR] (imputed)	N
609	chr6_ssto_hap7	3263150	3263151	rs592229	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	SKIV2L	rs592229-G	NR	3E-9		0.0166622	[0.011-0.022] unit decrease	Affymetrix [319769] (imputed)	N
609	chr6_ssto_hap7	3263150	3263151	rs592229	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	SKIV2L	rs592229-G	NR	6E-18		0.0269889	[0.021-0.033] unit decrease	Affymetrix [323858] (imputed)	N
609	chr6_ssto_hap7	3263150	3263151	rs592229	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	SKIV2L	rs592229-G	NR	2E-8		0.0157493	[0.01-0.021] unit decrease	Affymetrix [319769] (imputed)	N
609	chr6_ssto_hap7	3263150	3263151	rs592229	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	SKIV2L	rs592229-G	NR	1E-15		0.0250227	[0.019-0.031] unit decrease	Affymetrix [127266] (imputed)	N
609	chr6_ssto_hap7	3263150	3263151	rs592229	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	SKIV2L	rs592229-G	NR	5E-15		0.023966	[0.018-0.03] unit increase	Affymetrix [323123] (imputed)	N
609	chr6_ssto_hap7	3263150	3263151	rs592229	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p21.33	SKIV2L	rs592229-G	NR	5E-12		0.0214232	[0.015-0.027] unit decrease	Affymetrix [323858] (imputed)	N
609	chr6_ssto_hap7	3263150	3263151	rs592229	25281659	van der Valk RJ	2014-10-03	Hum Mol Genet	A novel common variant in DCST2 is associated with length in early life and height in adulthood.	Infant length	28,238 European ancestry individuals	NA	6p21.33	HLA	rs592229-G	0.43	2E-8		0.048	[0.030-0.066] unit increase	Affymetrix, Illumina [2193675] (imputed)	N
609	chr6_ssto_hap7	3263150	3263151	rs592229	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs592229-G	0.370399655280899	4E-6	(IGP42)	0.1536	[0.088-0.219] unit increase	Illumina [~ 2500000] (imputed)	N
609	chr6_ssto_hap7	3263150	3263151	rs592229	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.33	NR	rs592229-G	0.370283129554656	9E-6	(IGP2)	0.1479	[0.083-0.213] unit increase	Illumina [~ 2500000] (imputed)	N
609	chr6_ssto_hap7	3263171	3263172	rs429608	23455636	Fritsche LG	2013-03-03	Nat Genet	Seven new loci associated with age-related macular degeneration.	Age-related macular degeneration	6,713 European ancestry cases, 48,402 European ancestry contols, 110 Southern Indian ancestry cases, 119 Southern Indian ancestry controls, 827 Japanese ancestry cases, 3,323 Japanese ancestry controls	9,070 European ancestry cases, 7,683 European ancestry contols, 461 East Asian ancestry cases, 547 East Asian ancestry controls	6p21.33	CFB, C2	rs429608-G	0.86	4E-89		1.74	[1.68-1.79]	Affymetrix, Illumina [2442884] (imputed)	N
609	chr6_ssto_hap7	3263171	3263172	rs429608	20861866	Kopplin LJ	2010-09-23	Genes Immun	Genome-wide association identifies SKIV2L and MYRIP as protective factors for age-related macular degeneration.	Age-related macular degeneration	684 European ancestry cases, 188 European ancestry controls	1,896 European ancestry cases, 1,866 European ancestry controls	6p21.33	BF, SKIV2L	rs429608-?	NR	5E-15		1.85	[NR]	Affymetrix [> 361556] (imputed)	N
609	chr6_ssto_hap7	3263171	3263172	rs429608	20385819	Chen W	2010-04-12	Proc Natl Acad Sci U S A	Genetic variants near TIMP3 and high-density lipoprotein-associated loci influence susceptibility to age-related macular degeneration.	Age-related macular degeneration	2,157 European ancestry cases, 1,150 European ancestry controls	7,892 European ancestry cases, 5,998 European ancestry controls, 678 Japanese ancestry cases, 336 Japanese ancestry controls	6p21.33	CFB, C2	rs429608-G	0.842	3E-21		2.16	[1.84-2.53]	Illumina [~ 2500000] (imputed)	N
609	chr6_ssto_hap7	3263846	3263847	rs401775	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p21.33	NR	rs401775-?	NR	3E-12		0.1102	[0.079-0.141] unit increase	Illumina [at least 560000] (imputed)	N
609	chr6_ssto_hap7	3265870	3265871	rs406936	23577725	Naj AC	2013-05-01	Ann Hum Genet	Genetic factors in nonsmokers with age-related macular degeneration revealed through genome-wide gene-environment interaction analysis.	Age-related macular degeneration	1,207 European ancestry cases, 686 European ancestry controls	122 European ancestry cases, 86 European ancestry controls	6p21.33	SKIV2L	rs406936-?	0.10	7E-7		1.75	[1.41-2.17]	Affymetrix [2543887] (imputed)	N
609	chr6_ssto_hap7	3266227	3266228	rs492899	31241743	Jaeger M	2019-04-24	J Infect Dis	A Genome-Wide Functional Genomics Approach Identifies Susceptibility Pathways to Fungal Bloodstream Infection in Humans.	Candidemia	161 European ancestry cases, 152 European ancestry controls	NA	6p21.33	NR	rs492899-?	NR	2E-6		5.5555553	[NR]	Illumina [5326313] (imputed)	N
609	chr6_ssto_hap7	3266227	3266228	rs492899	30854688	Wang C	2019-03-10	Hepatology	Genome Wide Association Studies of Specific Antinuclear Autoantibody Sub-phenotypes in Primary Biliary Cholangitis.	Anti-sp100 seropositivity in primary biliary cholangitis	211 Han Chinese ancestry cases, 711 Han Chinese ancestry controls	234 Han Chinese ancestry cases, 1,018 Han Chinese ancestry controls	6p21.33	NR	rs492899-G	0.193	3E-22		2.9	[2.34-3.66]	Illumina [794531]	N
609	chr6_ssto_hap7	3266686	3266687	rs9296004	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TYK2	5,361 Icelandic ancestry individuals	NA	6p21.33		rs9296004-C	0.09963	6E-11		0.203156	[0.14-0.26] unit increase	Illumina [7506463] (imputed)	N
609	chr6_ssto_hap7	3266686	3266687	rs9296004	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LDLRAD4	5,362 Icelandic ancestry individuals	NA	6p21.33		rs9296004-C	0.09963	7E-11		0.200339	[0.14-0.26] unit increase	Illumina [7506463] (imputed)	N
609	chr6_ssto_hap7	3266686	3266687	rs9296004	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ISG15	5,349 Icelandic ancestry individuals	NA	6p21.33		rs9296004-C	0.09963	8E-62		0.488305	[0.43-0.55] unit decrease	Illumina [7506463] (imputed)	N
609	chr6_ssto_hap7	3266686	3266687	rs9296004	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL18RAP	5,360 Icelandic ancestry individuals	NA	6p21.33		rs9296004-C	0.09963	6E-30		0.350014	[0.29-0.41] unit decrease	Illumina [7506463] (imputed)	N
609	chr6_ssto_hap7	3266686	3266687	rs9296004	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FTMT	5,365 Icelandic ancestry individuals	NA	6p21.33		rs9296004-C	0.09963	4E-81		0.580682	[0.52-0.64] unit increase	Illumina [7506463] (imputed)	N
609	chr6_ssto_hap7	3266686	3266687	rs9296004	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DEFB119	5,366 Icelandic ancestry individuals	NA	6p21.33		rs9296004-C	0.09963	3E-94		0.623132	[0.56-0.68] unit increase	Illumina [7506463] (imputed)	N
609	chr6_ssto_hap7	3266686	3266687	rs9296004	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C4A;C4B	5,353 Icelandic ancestry individuals	NA	6p21.33		rs9296004-C	0.09963	1E-39		0.393378	[0.33-0.45] unit increase	Illumina [7506463] (imputed)	N
609	chr6_ssto_hap7	3266686	3266687	rs9296004	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	SKIV2L	rs9296004-C	0.082	3E-40	(Beta-defensin 119, DEFB119.13455.10.3)	0.61	[0.51-0.71] unit increase	Affymetrix [10572788] (imputed)	N
609	chr6_ssto_hap7	3268276	3268277	rs3911893	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DEFB119	5,366 Icelandic ancestry individuals	NA	6p21.33		rs3911893-A	0.0572	2E-35		0.507255	[0.43-0.59] unit increase	Illumina [7506463] (imputed)	N
609	chr6_ssto_hap7	3268459	3268460	rs106287	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	6p21.33	SKIV2L	rs106287-A	0.0424830000000001	8E-12		0.03863092	[0.028-0.05] unit decrease	Affymetrix [93095623] (imputed)	N
609	chr6_ssto_hap7	3268766	3268767	rs34241101	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6p21.33	NR	rs34241101-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
609	chr6_ssto_hap7	3268766	3268767	rs34241101	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Strep throat	52,487 European ancestry cases, 22,017 European ancestry controls	NA	6p21.33	NR	rs34241101-?	NR	2E-7		0.0548	[0.034-0.076] unit increase	Illumina [at least 560000] (imputed)	N
609	chr6_ssto_hap7	3269377	3269378	rs410851	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	6p21.33		rs410851-C	NR	1E-16		0.0169	[0.013-0.021] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
609	chr6_ssto_hap7	3269377	3269378	rs410851	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	6p21.33		rs410851-C	NR	3E-21		0.02	[0.016-0.024] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
609	chr6_ssto_hap7	3269377	3269378	rs410851	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.33	SKIV2L	rs410851-T	NR	5E-12		0.0206765	[0.015-0.027] unit increase	Affymetrix [321016] (imputed)	N
609	chr6_ssto_hap7	3270829	3270830	rs45531831	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	TNXB	rs45531831-T	0.023	3E-116	(Tenascin-X, TNXB.5698.60.3)	1.75	[1.59-1.91] unit decrease	Affymetrix [10572788] (imputed)	N
609	chr6_ssto_hap7	3272054	3272055	rs41267118	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL18RAP	5,360 Icelandic ancestry individuals	NA	6p21.33		rs41267118-A	0.04712	9E-9		0.259513	[0.17-0.35] unit decrease	Illumina [7506463] (imputed)	N
609	chr6_ssto_hap7	3272233	3272234	rs115085021	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CFB	5,365 Icelandic ancestry individuals	NA	6p21.33		rs115085021-C	0.03863	6E-25		0.502999	[0.41-0.6] unit increase	Illumina [7506463] (imputed)	N
609	chr6_ssto_hap7	3272927	3272928	rs75393409	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs75393409-?		2E-7		1.06	[1.04-1.09]	Illumina [7645193] (imputed)	N
609	chr6_ssto_hap7	3272927	3272928	rs75393409	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.33	Intergenic	rs75393409-?		4E-8		1.78	[1.45-2.18]	Illumina [7645193] (imputed)	N
609	chr6_ssto_hap7	3273606	3273607	rs389884	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FTMT	5,365 Icelandic ancestry individuals	NA	6p21.33		rs389884-G	0.08177	6E-137		0.828667	[0.76-0.89] unit decrease	Illumina [7506463] (imputed)	N
609	chr6_ssto_hap7	3273606	3273607	rs389884	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p21.33	STK19	rs389884-G	0.342	1E-32				Illumina [118177]	N
609	chr6_ssto_hap7	3273606	3273607	rs389884	23263863	Li J	2012-12-20	Hum Mol Genet	GWAS of blood cell traits identifies novel associated loci and epistatic interactions in Caucasian and African-American children.	Hematology traits	7,943 African American children, 6,234 European ancestry children	NA	6p21.33	CFB, STK19, ZBTB12	rs389884-C	0.0953	2E-8	(EA, WBC)	0.0254	[0.017-0.034] unit decrease	Illumina [544917]	N
609	chr6_ssto_hap7	3273606	3273607	rs389884	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.33	intergenic	rs389884-C	0.1148	8E-66		3.65	[NR]	Illumina [242824]	N
609	chr6_ssto_hap7	3274266	3274267	rs387608	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SIGLEC8	5,359 Icelandic ancestry individuals	NA	6p21.33		rs387608-A	0.1429	6E-12		0.181754	[0.13-0.23] unit increase	Illumina [7506463] (imputed)	N
609	chr6_ssto_hap7	3274266	3274267	rs387608	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PCDHGB4	5,352 Icelandic ancestry individuals	NA	6p21.33		rs387608-A	0.1429	2E-12		0.184372	[0.13-0.24] unit increase	Illumina [7506463] (imputed)	N
609	chr6_ssto_hap7	3274266	3274267	rs387608	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein OSM	5,348 Icelandic ancestry individuals	NA	6p21.33		rs387608-A	0.1429	4E-12		0.174055	[0.12-0.22] unit increase	Illumina [7506463] (imputed)	N
609	chr6_ssto_hap7	3274266	3274267	rs387608	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DES	5,344 Icelandic ancestry individuals	NA	6p21.33		rs387608-A	0.1429	5E-14		0.190553	[0.14-0.24] unit increase	Illumina [7506463] (imputed)	N
609	chr6_ssto_hap7	3274266	3274267	rs387608	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CFP	5,352 Icelandic ancestry individuals	NA	6p21.33		rs387608-A	0.1429	1E-15		0.207744	[0.16-0.26] unit decrease	Illumina [7506463] (imputed)	N
609	chr6_ssto_hap7	3274266	3274267	rs387608	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.33	SKIV2L, C4B, TNXB, DXO, STK19, C4A, C4A-AS1, CYP21A1P, TNXA, AL645922.1, STK19B, CYP21A2, C4B-AS1	rs387608-A	0.1214859	3E-25	(gp41 C34 peptide, HIV)	0.6703	[0.55-0.79] unit increase	Affymetrix [509946]	N
609	chr6_ssto_hap7	3274338	3274339	rs116420479	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	6p21.33	HLA region	rs116420479-?	NR	3E-8	(EA)			Affymetrix, Illumina [10537485] (imputed)	N
609	chr6_ssto_hap7	3274338	3274339	rs116420479	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	6p21.33	HLA region	rs116420479-?	NR	1E-8				Affymetrix, Illumina [10537485] (imputed)	N
609	chr6_ssto_hap7	3275942	3275943	rs41315812	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein USP25	5,360 Icelandic ancestry individuals	NA	6p21.33		rs41315812-T	0.0381	4E-157		1.22583	[1.14-1.32] unit increase	Illumina [7506463] (imputed)	N
609	chr6_ssto_hap7	3276745	3276746	rs1738434	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.33		rs1738434-G	0.595	1E-62				Affymetrix [10369434] (imputed)	N
609	chr6_ssto_hap7	3276745	3276746	rs1738434	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	STK19	rs1738434-T	NR	7E-11		0.0207324	[0.014-0.027] unit increase	Affymetrix [323858] (imputed)	N
609	chr6_ssto_hap7	3276745	3276746	rs1738434	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	STK19	rs1738434-T	NR	3E-9		0.0189414	[0.013-0.025] unit increase	Affymetrix [127266] (imputed)	N
609	chr6_ssto_hap7	3276745	3276746	rs1738434	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	STK19	rs1738434-T	NR	2E-10		0.0197638	[0.014-0.026] unit decrease	Affymetrix [323123] (imputed)	N
609	chr6_ssto_hap7	3276745	3276746	rs1738434	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p21.33	STK19	rs1738434-T	NR	4E-9		0.0185989	[0.012-0.025] unit increase	Affymetrix [323858] (imputed)	N
609	chr6_ssto_hap7	3276745	3276746	rs1738434	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	STK19	rs1738434-T	0.412	4E-34	(Trypsin-3, PRSS3.3479.71.2)	0.3	[0.26-0.34] unit decrease	Affymetrix [10572788] (imputed)	N
610	chr6_ssto_hap7	3277939	3277940	rs12524149	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs12524149-C	0.677	9E-49				Affymetrix [10369434] (imputed)	N
610	chr6_ssto_hap7	3278355	3278356	rs2734325	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	6p21.33	STK19	rs2734325-T	NR	3E-7	(EA)	1.0615711	[1.04-1.08]	Illumina [6627481] (imputed)	N
610	chr6_ssto_hap7	3279323	3279324	rs6941112	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	STK19	rs6941112-A	NR	3E-9		0.019993	[0.013-0.027] unit decrease	Affymetrix [323123] (imputed)	N
610	chr6_ssto_hap7	3279323	3279324	rs6941112	34011352	Schwarm C	2021-05-19	Orphanet J Rare Dis	Identification of two novel bullous pemphigoid- associated alleles, HLA-DQA1*05:05 and -DRB1*07:01, in Germans.	Bullous pemphigoid	438 German cases, 417 German controls	NA	6p21.33	STK19	rs6941112-?	NR	7E-6		0.498031	[0.28-0.71] unit increase	Affymetrix [up to 386296] (imputed)	N
610	chr6_ssto_hap7	3279323	3279324	rs6941112	31972866	Nagel M	2020-01-23	Acta Psychiatr Scand	Genome-wide association study of the sensitivity to environmental stress and adversity (SESA) neuroticism cluster.	Sensitivity to environmental stress and adversity	351,827 European ancestry individuals	NA	6p21.33	NR	rs6941112-A	NR	6E-12		0.01765	NR unit increase	NR [7259579]	N
610	chr6_ssto_hap7	3279683	3279684	rs77143442	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs77143442-C	0.023	3E-27	(Interleukin-21, IL21.7124.18.3)	0.9	[0.74-1.06] unit decrease	Affymetrix [10572788] (imputed)	N
610	chr6_ssto_hap7	3279736	3279737	rs181705462	26691988	Fritsche LG	2015-12-21	Nat Genet	A large genome-wide association study of age-related macular degeneration highlights contributions of rare and common variants.	Advanced age-related macular degeneration	16,144 European ancestry cases, 17,832 European ancestry controls	473 Asian ancestry cases, 1,099 Asian ancestry controls, 52 African ancestry cases, 361 African ancestry cases, 254 other non-European ancestry cases, 694 other non-European ancestry controls	6p21.33	C2, CFB, SKIV2L	rs181705462-?	NR	3E-10	(EA)	1.55		Illumina [12023830] (imputed)	N
610	chr6_ssto_hap7	3280169	3280170	rs389883	30626913	Amare AT	2019-01-09	Mol Psychiatry	Bivariate genome-wide association analyses of the broad depression phenotype combined with major depressive disorder, bipolar disorder or schizophrenia reveal eight novel genetic loci for depression.	Broad depression or schizophrenia	9,240 European ancestry broad depression cases, 9,519 European ancestry broad depression controls, 51,258 European ancestry individuals, 36,989 European and East Asian ancestry schizophrenia cases, 113,075 European and East Asian ancestry schizophrenia controls	322,580 individuals	6p21.33	STK19	rs389883-T	0.68	1E-12				Affymetrix, Illumina [at least 918921] (imputed)	N
610	chr6_ssto_hap7	3280626	3280627	rs114632474	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		STK19	rs114632474-?	NR	3E-10		1.8011	[NR] unit decrease	Affymetrix [NR] (imputed)	N
610	chr6_ssto_hap7	3304978	3304979	rs199619373	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	6p21.33	PRRC2A	rs199619373-A	0.1293	4E-8	(S1P d16:1)	0.1068	[0.069-0.144] unit decrease	Illumina [~ 47000000] (imputed)	N
610	chr6_ssto_hap7	3307064	3307065	rs28641793	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	6p21.33	NR	rs28641793-A	0.011961	6E-14		0.0840715	[0.061-0.107] unit increase	Affymetrix [16585745] (imputed)	N
610	chr6_ssto_hap7	3307432	3307433	rs28361034	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	C4A	rs28361034-G	0.722	7E-36	(Glutamate receptor 4, GRIA4.10760.107.3)	0.36	[0.3-0.42] unit increase	Affymetrix [10572788] (imputed)	N
610	chr6_ssto_hap7	3307432	3307433	rs28361034	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	C4A	rs28361034-G	0.722	1E-18	(Vesicle-fusing ATPase, NSF.13992.12.3)	0.26	[0.2-0.32] unit increase	Affymetrix [10572788] (imputed)	N
610	chr6_ssto_hap7	3307967	3307968	rs554383943	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.33	NR	rs554383943-C	0.986	2E-13		3.634	[3.29-3.98]	Illumina [11270530] (imputed)	N
610	chr6_ssto_hap7	3313855	3313856	rs4959021	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	6p21.33	Intergenic	rs4959021-T	NR	2E-6		0.0232941	[0.014-0.033] unit increase	Illumina [13519193] (imputed)	N
610	chr6_ssto_hap7	3313855	3313856	rs4959021	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.33	Intergenic	rs4959021-T	NR	5E-7	(women)	0.0322206	[0.02-0.045] unit increase	Illumina [13520550] (imputed)	N
610	chr6_ssto_hap7	3313855	3313856	rs4959021	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.33	Intergenic	rs4959021-T	NR	2E-9		0.0268709	[0.018-0.036] unit increase	Illumina [13520550] (imputed)	N
610	chr6_ssto_hap7	3313855	3313856	rs4959021	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	6p21.33	Intergenic	rs4959021-T	NR	3E-19		0.0468195	[0.037-0.057] unit increase	Illumina [13520550] (imputed)	N
610	chr6_ssto_hap7	3327432	3327433	rs200283861	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.33	NR	rs200283861-A	0.277	3E-23		1.203	[1.17-1.24]	Illumina [11270530] (imputed)	N
610	chr6_ssto_hap7	3327491	3327492	rs451637	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs451637-T	0.308	2E-22	(Beta-defensin 119, DEFB119.13455.10.3)	0.28	[0.22-0.34] unit decrease	Affymetrix [10572788] (imputed)	N
610	chr6_ssto_hap7	3329233	3329234	rs406658	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LDLRAD4	5,362 Icelandic ancestry individuals	NA	6p21.33		rs406658-A	0.1189	3E-18		0.250928	[0.19-0.31] unit increase	Illumina [7506463] (imputed)	N
610	chr6_ssto_hap7	3329233	3329234	rs406658	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HNF4A	5,363 Icelandic ancestry individuals	NA	6p21.33		rs406658-A	0.1189	5E-14		0.217282	[0.16-0.27] unit increase	Illumina [7506463] (imputed)	N
610	chr6_ssto_hap7	3329233	3329234	rs406658	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6p21.33	C4B	rs406658-A	0.110604	2E-10		0.024302784	[0.017-0.032] unit increase	Affymetrix [93095623] (imputed)	N
610	chr6_ssto_hap7	3329233	3329234	rs406658	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	C4A, C4B	rs406658-A	0.119	3E-52	(Complement C4, C4A.C4B.4481.34.2)	0.56	[0.48-0.64] unit increase	Affymetrix [10572788] (imputed)	N
610	chr6_ssto_hap7	3337977	3337978	rs431204	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p21.33	NR	rs431204-?	NR	1E-6		4.868	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
610	chr6_ssto_hap7	3338014	3338015	rs4713496	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.33		rs4713496-A	0.981	1E-36				Affymetrix [10369434] (imputed)	N
610	chr6_ssto_hap7	3338014	3338015	rs4713496	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.33		rs4713496-A	0.981	3E-36				Affymetrix [10369434] (imputed)	N
610	chr6_ssto_hap7	3338065	3338066	rs113720465	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.33	NR	rs113720465-A	0.052	6E-30	(conditional)	0.447	[0.31-0.59]	Illumina [11270530] (imputed)	N
610	chr6_ssto_hap7	3338359	3338360	rs396458	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein UBC	5,349 Icelandic ancestry individuals	NA	6p21.33		rs396458-G	0.1452	4E-20		0.229839	[0.18-0.28] unit increase	Illumina [7506463] (imputed)	N
610	chr6_ssto_hap7	3338359	3338360	rs396458	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TRIL	5,360 Icelandic ancestry individuals	NA	6p21.33		rs396458-G	0.1452	7E-12		0.183406	[0.13-0.24] unit increase	Illumina [7506463] (imputed)	N
610	chr6_ssto_hap7	3338359	3338360	rs396458	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LAYN	5,339 Icelandic ancestry individuals	NA	6p21.33		rs396458-G	0.1452	3E-15		0.189442	[0.14-0.24] unit increase	Illumina [7506463] (imputed)	N
610	chr6_ssto_hap7	3338359	3338360	rs396458	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL34	5,345 Icelandic ancestry individuals	NA	6p21.33		rs396458-G	0.1452	4E-20		0.227625	[0.18-0.28] unit increase	Illumina [7506463] (imputed)	N
610	chr6_ssto_hap7	3338359	3338360	rs396458	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GCNT4	5,342 Icelandic ancestry individuals	NA	6p21.33		rs396458-G	0.1452	3E-12		0.175139	[0.13-0.22] unit increase	Illumina [7506463] (imputed)	N
610	chr6_ssto_hap7	3339304	3339305	rs6462	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	CYP21A2	rs6462-C	NR	2E-9		0.0206131	[0.014-0.027] unit increase	Affymetrix [323123] (imputed)	N
610	chr6_ssto_hap7	3339593	3339594	rs6474	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	CYP21A2	rs6474-A	NR	4E-9		0.0198676	[0.013-0.026] unit increase	Affymetrix [323858] (imputed)	N
610	chr6_ssto_hap7	3339603	3339604	rs6455	26385043	Kertai MD	2015-06-17	Am Heart J	Genome-wide association study of new-onset atrial fibrillation after coronary artery bypass grafting surgery.	Postoperative atrial fibrillation in coronary artery bypass grafting surgery	620 European ancestry cases, 257 European ancestry controls	220 cases, 84 controls	6p21.33	CYP21A2	rs6455-G	0.015	3E-6		1.96	[0.51-7.58]	Illumina [524975]	N
610	chr6_ssto_hap7	3339770	3339771	rs6466	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Scarlet fever	6,812 European ancestry cases, 113,837 European ancestry controls	NA	6p21.33	NR	rs6466-?	NR	3E-6		0.0939	[0.055-0.133] unit increase	Illumina [at least 560000] (imputed)	N
610	chr6_ssto_hap7	3340331	3340332	rs6458	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TMEM52B	5,359 Icelandic ancestry individuals	NA	6p21.33		rs6458-G	0.119	2E-13		0.212277	[0.16-0.27] unit increase	Illumina [7506463] (imputed)	N
610	chr6_ssto_hap7	3340331	3340332	rs6458	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ISG15	5,349 Icelandic ancestry individuals	NA	6p21.33		rs6458-G	0.119	8E-28		0.307651	[0.25-0.36] unit decrease	Illumina [7506463] (imputed)	N
610	chr6_ssto_hap7	3340331	3340332	rs6458	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ERP29	5,363 Icelandic ancestry individuals	NA	6p21.33		rs6458-G	0.119	1E-12		0.209088	[0.15-0.27] unit increase	Illumina [7506463] (imputed)	N
610	chr6_ssto_hap7	3340331	3340332	rs6458	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CMPK1	5,365 Icelandic ancestry individuals	NA	6p21.33		rs6458-G	0.119	6E-14		0.220731	[0.16-0.28] unit increase	Illumina [7506463] (imputed)	N
610	chr6_ssto_hap7	3340331	3340332	rs6458	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C4A;C4B	5,362 Icelandic ancestry individuals	NA	6p21.33		rs6458-G	0.119	8E-56		0.450845	[0.39-0.51] unit increase	Illumina [7506463] (imputed)	N
610	chr6_ssto_hap7	3340332	3340333	rs6459	33941608	Khan A	2021-05-03	J Am Soc Nephrol	Medical Records-Based Genetic Studies of the Complement System.	Complement C4 levels	3,247 European ancestry individuals, 600 African ancestry individuals, 151 East Asian ancestry individuals	NA	6p21.33	C4	rs6459-T	0.12	8E-29		0.38	[0.32-0.43] unit increase	NR [NR] (imputed)	N
610	chr6_ssto_hap7	3340332	3340333	rs6459	33941608	Khan A	2021-05-03	J Am Soc Nephrol	Medical Records-Based Genetic Studies of the Complement System.	Complement C4 levels	3,247 European ancestry individuals, 600 African ancestry individuals, 151 East Asian ancestry individuals	NA	6p21.33	C4	rs6459-T	0.1	8E-30	(EA)	0.45	[0.39-0.50] unit increase	NR [NR] (imputed)	N
610	chr6_ssto_hap7	3341631	3341632	rs6447	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C4A;C4B	5,353 Icelandic ancestry individuals	NA	6p21.33		rs6447-A	0.01467	1E-18		0.67965	[0.53-0.83] unit decrease	Illumina [7506463] (imputed)	N
610	chr6_ssto_hap7	3341986	3341987	rs415620	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.33		rs415620-T	0.943	2E-17				Affymetrix [10369434] (imputed)	N
610	chr6_ssto_hap7	3342008	3342009	rs7774739	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.33	NR	rs7774739-A	0.993	1E-10	(conditional)	0.483	[0.26-0.7]	Illumina [11270530] (imputed)	N
610	chr6_ssto_hap7	3342082	3342083	rs7756934	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6p21.33	TNXB	rs7756934-?	NR	9E-6	(TAG 58:9)	0.2544521	[0.14-0.37] unit increase	Affymetrix [at least 2500000] (imputed)	N
610	chr6_ssto_hap7	3343439	3343440	rs1135809	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	TNXB	rs1135809-G	NR	1E-11		0.0213697	[0.015-0.028] unit decrease	Affymetrix [323123] (imputed)	N
610	chr6_ssto_hap7	3343911	3343912	rs2734313	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	TNXB	rs2734313-C	NR	9E-10		0.0195186	[0.013-0.026] unit increase	Affymetrix [323858] (imputed)	N
610	chr6_ssto_hap7	3343911	3343912	rs2734313	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	TNXB	rs2734313-C	NR	3E-8		0.0176763	[0.011-0.024] unit increase	Affymetrix [127266] (imputed)	N
610	chr6_ssto_hap7	3343911	3343912	rs2734313	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	TNXB	rs2734313-C	NR	5E-9		0.0169883	[0.011-0.023] unit increase	Affymetrix [321169] (imputed)	N
610	chr6_ssto_hap7	3344065	3344066	rs2856451	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.33	TNXB	rs2856451-A	NR	8E-12		0.0193125	[0.014-0.025] unit decrease	Affymetrix [319769] (imputed)	N
610	chr6_ssto_hap7	3344065	3344066	rs2856451	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.33	TNXB	rs2856451-A	NR	2E-13		0.0230817	[0.017-0.029] unit decrease	Affymetrix [323858] (imputed)	N
610	chr6_ssto_hap7	3344065	3344066	rs2856451	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.33	TNXB	rs2856451-A	NR	6E-11		0.0185015	[0.013-0.024] unit decrease	Affymetrix [319769] (imputed)	N
610	chr6_ssto_hap7	3344065	3344066	rs2856451	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.33	TNXB	rs2856451-A	NR	2E-11		0.0210983	[0.015-0.027] unit decrease	Affymetrix [127266] (imputed)	N
610	chr6_ssto_hap7	3344065	3344066	rs2856451	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.33	TNXB	rs2856451-A	NR	2E-15		0.0227758	[0.017-0.028] unit decrease	Affymetrix [321169] (imputed)	N
610	chr6_ssto_hap7	3344065	3344066	rs2856451	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p21.33	TNXB	rs2856451-G	0.518309	2E-11		0.017992081	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
610	chr6_ssto_hap7	3344065	3344066	rs2856451	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	6p21.33	TNXB	rs2856451-G	0.518312	6E-11		0.017482799	[0.012-0.023] unit increase	Affymetrix [93095623] (imputed)	N
610	chr6_ssto_hap7	3344065	3344066	rs2856451	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	6p21.33	NR	rs2856451-G	0.519311	4E-14		0.0506538	[0.037-0.064] unit decrease	Affymetrix [17914406] (imputed)	N
610	chr6_ssto_hap7	3344065	3344066	rs2856451	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	White blood cell count	8,825 African American individuals, 18,251 Hispanic/Latino individuals, 543 Asian ancestry individuals, 606 Native American ancestry individuals, 383 individuals	NA	6p21.33	NR	rs2856451-?	NR	7E-6		0.01116211	[0.0063-0.016] unit increase	Illumina [30613845] (imputed)	N
610	chr6_ssto_hap7	3344065	3344066	rs2856451	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	6p21.33	TNXB	rs2856451-G	0.5174	3E-95		0.07491311	[0.068-0.082] unit increase	Affymetrix [~ 2500000] (imputed)	N
610	chr6_ssto_hap7	3344065	3344066	rs2856451	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	6p21.33	TNXB	rs2856451-G	0.5175	5E-57		0.05732686	[0.05-0.064] unit increase	Affymetrix [~ 2500000] (imputed)	N
610	chr6_ssto_hap7	3344065	3344066	rs2856451	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	6p21.33	TNXB	rs2856451-G	0.5175	8E-50		0.05341342	[0.046-0.06] unit increase	Affymetrix [~ 2500000] (imputed)	N
610	chr6_ssto_hap7	3347163	3347164	rs34214527	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	6p21.33	Intergenic	rs34214527-C	0.9156	4E-10		0.0256	[0.018-0.034] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
610	chr6_ssto_hap7	3347282	3347283	rs2856448	35264221	Caron B	2022-03-09	Genome Med	Integrative genetic and immune cell analysis of plasma proteins in healthy donors identifies novel associations involving primary immune deficiency genes.	TN X plasma levels	400 French ancestry individuals	NA	6p21.33		rs2856448-G	NR	1E-38		0.685	[0.64-0.73] ng/mL increase	Illumina [5201092] (imputed)	N
610	chr6_ssto_hap7	3347535	3347536	rs433061	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	6p21.33	NR	rs433061-A	0.111550236715686	4E-17		0.012269953	[0.0094-0.0151] unit decrease	NR [NR]	N
610	chr6_ssto_hap7	3347535	3347536	rs433061	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	6p21.33	NR	rs433061-?	NR	8E-6		0.0786	[0.044-0.113] unit decrease	Illumina [at least 560000] (imputed)	N
610	chr6_ssto_hap7	3350314	3350315	rs146280229	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.33	NR	rs146280229-C	0.007	1E-11	(conditional)	1.815	[1.64-1.99]	Illumina [11270530] (imputed)	N
610	chr6_ssto_hap7	3352089	3352090	rs115521560	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL18RAP	5,360 Icelandic ancestry individuals	NA	6p21.33		rs115521560-C	0.07408	4E-6		0.168353	[0.097-0.24] unit decrease	Illumina [7506463] (imputed)	N
610	chr6_ssto_hap7	3352089	3352090	rs115521560	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C4A;C4B	5,353 Icelandic ancestry individuals	NA	6p21.33		rs115521560-C	0.07408	6E-20		0.322359	[0.25-0.39] unit decrease	Illumina [7506463] (imputed)	N
610	chr6_ssto_hap7	3352219	3352220	rs41316748	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	6p21.33	NR	rs41316748-C	0.0430592148955273	1E-8		0.012935713	[0.0085-0.0174] unit increase	NR [NR]	N
610	chr6_ssto_hap7	3352219	3352220	rs41316748	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	6p21.33	NR	rs41316748-C	0.0430592148955273	2E-8		0.021394862	[0.014-0.029] unit increase	NR [NR]	N
610	chr6_ssto_hap7	3352219	3352220	rs41316748	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	6p21.33	NR	rs41316748-C	0.0430592148955273	2E-8		0.0137647055	[0.0089-0.0186] unit increase	NR [NR]	N
610	chr6_ssto_hap7	3352219	3352220	rs41316748	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	TNXB	rs41316748-C	0.042	2E-114	(Ubiquitin carboxyl-terminal hydrolase 25, USP25.9215.117.3)	1.31	[1.19-1.43] unit increase	Affymetrix [10572788] (imputed)	N
610	chr6_ssto_hap7	3352219	3352220	rs41316748	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p21.33	TNXB	rs41316748-C	0.04	1E-12		1.19	[1.15-1.23]	Illumina [at least 560000] (imputed)	N
610	chr6_ssto_hap7	3352453	3352454	rs2857009	23028341	Yang X	2012-09-13	PLoS Genet	Genome-wide association study for serum complement C3 and C4 levels in healthy Chinese subjects.	Complement C3 and C4 levels	1,999 Han Chinese ancestry male individuals	1,496 Han Chinese ancestry male individuals	6p21.33	C4	rs2857009-G	0.20	1E-22	(Serum level of C4)	0.08	[0.060-0.100] g/L increase	Illumina [1940245] (imputed)	N
610	chr6_ssto_hap7	3353668	3353669	rs34562262	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RACGAP1	5,360 Icelandic ancestry individuals	NA	6p21.33		rs34562262-C	0.04252	7E-83		0.878733	[0.79-0.97] unit decrease	Illumina [7506463] (imputed)	N
610	chr6_ssto_hap7	3353668	3353669	rs34562262	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL18RAP	5,360 Icelandic ancestry individuals	NA	6p21.33		rs34562262-C	0.04252	3E-89		0.913858	[0.82-1] unit decrease	Illumina [7506463] (imputed)	N
610	chr6_ssto_hap7	3353668	3353669	rs34562262	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	6p21.33	TNXB	rs34562262-C	0.059314	9E-12		0.03548271	[0.025-0.046] unit increase	Affymetrix [93095623] (imputed)	N
610	chr6_ssto_hap7	3353668	3353669	rs34562262	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	6p21.33	NR	rs34562262-?		2E-15	(AGER)	0.6405	[NR] unit decrease	Illumina [NR]	N
610	chr6_ssto_hap7	3353837	3353838	rs11969759	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RACGAP1	5,360 Icelandic ancestry individuals	NA	6p21.33		rs11969759-T	0.03907	1E-34		0.606915	[0.51-0.7] unit decrease	Illumina [7506463] (imputed)	N
610	chr6_ssto_hap7	3353837	3353838	rs11969759	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL18RAP	5,360 Icelandic ancestry individuals	NA	6p21.33		rs11969759-T	0.03907	2E-51		0.736692	[0.64-0.83] unit decrease	Illumina [7506463] (imputed)	N
610	chr6_ssto_hap7	3353837	3353838	rs11969759	30636644	Nazarian A	2019-01-12	Alzheimers Res Ther	Genome-wide analysis of genetic predisposition to Alzheimer's disease and related sex disparities.	Alzheimer's disease	952 European ancestry male cases, 1,789 European ancestry female cases, 6,337 European ancestry male controls, 8,402 European ancestry female controls	NA	6p21.33	TNXB	rs11969759-?	NR	2E-6	(females)	1.6222337		Affymetrix, Illumina [2928658] (imputed)	N
610	chr6_ssto_hap7	3357539	3357540	rs6937318	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	TNXB	rs6937318-T	NR	9E-16		0.0245113	[0.019-0.03] unit increase	Affymetrix [323123] (imputed)	N
610	chr6_ssto_hap7	3357539	3357540	rs6937318	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.33		rs6937318-C	0.513236	2E-15		1.0343082	[1.03-1.04]	Affymetrix, Illumina [9851866] (imputed)	N
610	chr6_ssto_hap7	3358570	3358571	rs369637	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.33	TNXB	rs369637-T	NR	9E-9		0.0231685	[0.015-0.031] unit increase	Affymetrix [323123] (imputed)	N
610	chr6_ssto_hap7	3358570	3358571	rs369637	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.33	ABHD16A, AGER, AGPAT1, AIF1, APOM, ATF6B, ATP6V1G2, ATP6V1G2-DDX39B, BAG6, BTNL2, C2, C2-AS1, C4A, C4B, C4B_2, C6orf10, C6orf15, C6orf25, C6orf47, C6orf48, CCHCR1, CDSN, CFB, CLIC1, CSNK2B, CYP21A1P, CYP21A2, DDAH2, DDX39B, DXO, EGFL8, EHMT2, FKBPL, GPANK1, GPSM3, HCG23, HCG26, HCG27, HCP5, HLA-B, HLA-C, HLA-DOB, HLA-DQA1, HLA-DQA2, HLA-DQB1, HLA-DQB2, HLA-DRA, HLA-DRB1, HLA-DRB5, HLA-DRB6, HSPA1A, HSPA1B, HSPA1L, LOC100507547, LSM2, LST1, LTA, LTB, LY6G5B, LY6G5C, LY6G6C, LY6G6D, LY6G6E, LY6G6F, MCCD1, MICA, MICB, MIR1236, MIR3135B, MIR4646, MIR6721, MIR6832, MIR6833, MIR6891, MSH5, MSH5-SAPCD1, NCR3, NELFE, NEU1, NFKBIL1, NOTCH4, PBX2, POU5F1, PPT2, PPT2-EGFL8, PRRC2A, PRRT1, PSMB8, PSMB8-AS1, PSMB9, PSORS1C1, PSORS1C2, PSORS1C3, RNF5, RNF5P1, SAPCD1, SAPCD1-AS1, SKIV2L, SLC44A4, SNORA38, SNORD117, SNORD48, SNORD52, SNORD84, STK19, TAP1, TAP2, TCF19, TNF, TNXA, TNXB, VARS, VWA7, ZBTB12	rs369637-?		2E-10		1.098901	[1.06-1.12]	Affymetrix, Illumina [NR]	N
610	chr6_ssto_hap7	3358814	3358815	rs1009382	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:0_[M+H]1+/Phosphatidylethanolamine_35:0_[M+H]1+/Phosphatidate_37:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	6p21.33		rs1009382-C	NR	4E-10		0.0841202	[0.058-0.111] unit decrease	Affymetrix [87696910] (imputed)	N
610	chr6_ssto_hap7	3359515	3359516	rs12198173	20041166	Fellay J	2009-12-24	PLoS Genet	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	6p21.33	TNXB	rs12198173-?	NR	3E-6	(progression)			Illumina [NR]	N
610	chr6_ssto_hap7	3360856	3360857	rs1150758	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p21.33	TNXB	rs1150758-C	NR	1E-10		0.0261542	[0.018-0.034] unit decrease	Affymetrix [323858] (imputed)	N
610	chr6_ssto_hap7	3361912	3361913	rs1150757	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	6p21.33	NR	rs1150757-A	0.111940064634901	1E-14		0.014838932	[0.011-0.019] unit decrease	NR [NR]	N
610	chr6_ssto_hap7	3361912	3361913	rs1150757	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	6p21.33	NR	rs1150757-A	0.111940064634901	3E-14		0.019090127	[0.014-0.024] unit decrease	NR [NR]	N
610	chr6_ssto_hap7	3361912	3361913	rs1150757	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	6p21.33	NR	rs1150757-A	0.111940064634901	1E-14		0.012505894	[0.0093-0.0157] unit decrease	NR [NR]	N
610	chr6_ssto_hap7	3361912	3361913	rs1150757	29769526	Estrada K	2018-05-16	Nat Commun	A whole-genome sequence study identifies genetic risk factors for neuromyelitis optica.	Neuromyelitis optica (AQP4-IgG-positive)	66 European ancestry cases, 784 European ancestry controls	66 European ancestry cases, 460 European ancestry controls	6p21.33	C4A, C4B	rs1150757-A	0.1	3E-16		4.66	[3.22-6.74]	Affymetrix [6804788] (imputed)	N
610	chr6_ssto_hap7	3361912	3361913	rs1150757	29769526	Estrada K	2018-05-16	Nat Commun	A whole-genome sequence study identifies genetic risk factors for neuromyelitis optica.	Neuromyelitis optica	66 European ancestry AQP4-IgG antibody seropositive cases, 63 European ancestry AQP4-IgG antibody seronegative cases, 784 European ancestry controls	66 European ancestry AQP4-IgG antibody seropositive cases, 20 European ancestry AQP4-IgG antibody seronegative cases, 460 European ancestry controls	6p21.33	C4A, C4B	rs1150757-A	0.10	7E-12		2.86	[1.98-4.14]	Affymetrix [6804788] (imputed)	N
610	chr6_ssto_hap7	3361912	3361913	rs1150757	27399966	Morris DL	2016-07-11	Nat Genet	Genome-wide association meta-analysis in Chinese and European individuals identifies ten new loci associated with systemic lupus erythematosus.	Systemic lupus erythematosus	1,659 Chinese ancestry cases, 3,398 Chinese ancestry controls, 4,036 European ancestry cases, 6,959 European ancestry controls	3,043 Chinese ancestry cases, 5,074 Chinese ancestry controls, 2,643 European ancestry cases, 9,032 European ancestry controls	6p21.33	MHC class III	rs1150757-?	0.092	2E-101	(EA)	2.53	[NR]	NR [6344733] (imputed)	N
610	chr6_ssto_hap7	3361912	3361913	rs1150757	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	NA	6p21.33	TNXB	rs1150757-A		6E-107		2.33	[NR]	Illumina [> 644674] (imputed)	N
610	chr6_ssto_hap7	3363407	3363408	rs9267797	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.33	NR	rs9267797-T	0.015	7E-94	(Tenascin-X, TNXB.5698.60.3)	1.97	[1.77-2.17] unit increase	Affymetrix [10572788] (imputed)	N
610	chr6_ssto_hap7	3365450	3365451	rs204883	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SURF1	5,347 Icelandic ancestry individuals	NA	6p21.33		rs204883-A	0.3642	4E-14		0.138805	[0.1-0.17] unit decrease	Illumina [7506463] (imputed)	N
610	chr6_ssto_hap7	3365450	3365451	rs204883	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	6p21.33	NR	rs204883-A	0.404749301755246	2E-9		0.005591649	[0.0038-0.0074] unit increase	NR [NR]	N
610	chr6_ssto_hap7	3365450	3365451	rs204883	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	6p21.33	Intergenic	rs204883-A	0.414	1E-8	(MTAG)	0.0096	[0.0063-0.0129] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
610	chr6_ssto_hap7	3365450	3365451	rs204883	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	6p21.33	Intergenic	rs204883-A	0.3876	1E-10	(MTAG)	0.0151	[0.01-0.02] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
610	chr6_ssto_hap7	3365450	3365451	rs204883	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	6p21.33	Intergenic	rs204883-A	0.3876	7E-9		0.017	[0.011-0.023] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
610	chr6_ssto_hap7	3366323	3366324	rs1265889	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Nephrotic syndrome	775 European ancestry cases, 475,255 European ancestry controls, 1,314 East Asian ancestry cases, 177,412 East Asian ancestry controls	NA	6p21.33		rs1265889-A	NR	2E-16		0.524	[0.4-0.65] unit increase	Affymetrix, Illumina [25844401] (imputed)	N
610	chr6_ssto_hap7	3366651	3366652	rs3117189	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FTMT	5,365 Icelandic ancestry individuals	NA	6p21.33		rs3117189-A	0.2078	7E-41		0.308372	[0.26-0.35] unit decrease	Illumina [7506463] (imputed)	N
611	chr6_ssto_hap7	3450030	3450031	rs3134963	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	6p21.32	FKBPL, PRRT1	rs3134963-T	0.149	3E-10		0.128	[0.089-0.167] unit decrease	Affymetrix [~ 11900000] (imputed)	N
611	chr6_ssto_hap7	3450406	3450407	rs13211318	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Strep throat	52,487 European ancestry cases, 22,017 European ancestry controls	NA	6p21.32	NR	rs13211318-?	NR	3E-7		0.051	[0.031-0.071] unit increase	Illumina [at least 560000] (imputed)	N
611	chr6_ssto_hap7	3451475	3451476	rs145827824	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.32	NR	rs145827824-G	0.011	2E-16		0.699809	[0.53-0.87] unit increase	Affymetrix [up to 8900000] (imputed)	N
611	chr6_ssto_hap7	3451475	3451476	rs145827824	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.32	NR	rs145827824-G	0.011	1E-8	(women)	0.797658	[0.53-1.07] unit increase	Affymetrix [up to 8900000] (imputed)	N
611	chr6_ssto_hap7	3451475	3451476	rs145827824	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.32	NR	rs145827824-G	0.011	1E-7	(men)	0.57225	[0.36-0.78] unit increase	Affymetrix [up to 8900000] (imputed)	N
611	chr6_ssto_hap7	3454864	3454865	rs3096698	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL18RAP	5,360 Icelandic ancestry individuals	NA	6p21.32		rs3096698-T	0.4309	1E-12		0.134973	[0.098-0.172] unit decrease	Illumina [7506463] (imputed)	N
611	chr6_ssto_hap7	3454864	3454865	rs3096698	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	6p21.32	PRRT1	rs3096698-T	0.3668	6E-15		0.2611	[0.2-0.33] mmHg decrease	Affymetrix [NR] (imputed)	N
611	chr6_ssto_hap7	3457703	3457704	rs204999	23022100	Franceschini N	2012-09-26	Am J Hum Genet	Discovery and fine mapping of serum protein loci through transethnic meta-analysis.	Serum total protein level	Up to 25,539 European ancestry individuals, 10,168 Japanese ancestry individuals	NA		intergenic	rs204999-A	0.74	4E-11		0.0266	[0.019-0.034] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
611	chr6_ssto_hap7	3457703	3457704	rs204999	23022100	Franceschini N	2012-09-26	Am J Hum Genet	Discovery and fine mapping of serum protein loci through transethnic meta-analysis.	Serum total protein level	Up to 25,539 European ancestry individuals, 10,168 Japanese ancestry individuals	NA		intergenic	rs204999-A	0.74	3E-9	(EA)	0.025	[0.017-0.033] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
611	chr6_ssto_hap7	3457703	3457704	rs204999	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA		intergenic	rs204999-G	0.2643	9E-40		2.44	[NR]	Illumina [242824]	N
611	chr6_ssto_hap7	3458238	3458239	rs77619009	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.32		rs77619009-A	0.944	4E-16				Affymetrix [10369434] (imputed)	N
611	chr6_ssto_hap7	3458307	3458308	rs3130277	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	PRRT1	rs3130277-C	NR	2E-8		0.0208014	[0.014-0.028] unit decrease	Affymetrix [323858] (imputed)	N
611	chr6_ssto_hap7	3458748	3458749	rs565981183	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs565981183-CA	0.876	1E-11		1.192	[1.14-1.24]	Illumina [11270530] (imputed)	N
611	chr6_ssto_hap7	3460350	3460351	rs3130279	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL21	5,363 Icelandic ancestry individuals	NA	6p21.32		rs3130279-A	0.207	5E-14		0.174333	[0.13-0.22] unit increase	Illumina [7506463] (imputed)	N
611	chr6_ssto_hap7	3462239	3462240	rs9296009	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	PRRT1	rs9296009-T	0.216	7E-13	(UDP-N-acetylhexosamine pyrophosphorylase, UAP1.13580.2.3)	0.21	[0.15-0.27] unit decrease	Affymetrix [10572788] (imputed)	N
611	chr6_ssto_hap7	3462239	3462240	rs9296009	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	PRRT1	rs9296009-T	0.216	3E-37	(Rac GTPase-activating protein 1, RACGAP1.13587.10.3)	0.37	[0.31-0.43] unit decrease	Affymetrix [10572788] (imputed)	N
611	chr6_ssto_hap7	3462239	3462240	rs9296009	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	PRRT1	rs9296009-T	0.196796488164359	4E-6	(IGP18)	0.1779	[0.1-0.25] unit decrease	Illumina [~ 2500000] (imputed)	N
611	chr6_ssto_hap7	3462239	3462240	rs9296009	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	PRRT1	rs9296009-T	0.19676420855615	4E-6	(IGP25)	0.1773	[0.1-0.25] unit decrease	Illumina [~ 2500000] (imputed)	N
611	chr6_ssto_hap7	3462239	3462240	rs9296009	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	PRRT1	rs9296009-T	0.196432337204109	4E-8	(IGP23)	0.2111	[0.14-0.29] unit decrease	Illumina [~ 2500000] (imputed)	N
611	chr6_ssto_hap7	3462946	3462947	rs28732178	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	6p21.32	NR	rs28732178-?	NR	8E-11		6.496	NR z score decrease	Illumina [at least 830937] (imputed)	N
611	chr6_ssto_hap7	3467622	3467623	rs3131283	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	PRRT1	rs3131283-T	NR	4E-16		0.0353753	[0.027-0.044] unit increase	Affymetrix [323123] (imputed)	N
611	chr6_ssto_hap7	3468439	3468440	rs1053924	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:0_[M+H]1+/Phosphatidylethanolamine_35:0_[M+H]1+/Phosphatidate_37:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	6p21.32		rs1053924-T	NR	3E-10		0.0786544	[0.054-0.103] unit decrease	Affymetrix [87696910] (imputed)	N
611	chr6_ssto_hap7	3470196	3470197	rs3096696	25987655	Fernandez CA	2015-05-18	Blood	Genome-wide analysis links NFATC2 with asparaginase hypersensitivity.	Asparaginase hypersensitivity in acute lymphoblastic leukemia	3,126 child cases	182 child cases	6p21.32	PPT2	rs3096696-A		4E-6		1.478		Affymetrix [NR]	N
611	chr6_ssto_hap7	3475203	3475204	rs3134950	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:0_[M+H]1+/Phosphatidylethanolamine_35:0_[M+H]1+/Phosphatidate_37:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	6p21.32		rs3134950-C	NR	3E-16		0.100569	[0.076-0.125] unit decrease	Affymetrix [87696910] (imputed)	N
611	chr6_ssto_hap7	3475203	3475204	rs3134950	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	6p21.32	EGFL8	rs3134950-A	0.622	1E-8		0.01510972	[0.0099-0.0203] unit decrease	Affymetrix [~ 11515000] (imputed)	N
611	chr6_ssto_hap7	3475203	3475204	rs3134950	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	6p21.32	PPT2	rs3134950-A	0.624	1E-10		0.0079	[0.0055-0.0103] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
611	chr6_ssto_hap7	3475203	3475204	rs3134950	24823311	Guan W	2014-05-13	Circ Cardiovasc Genet	Genome-wide association study of plasma N6 polyunsaturated fatty acids within the cohorts for heart and aging research in genomic epidemiology consortium.	Plasma omega-6 polyunsaturated fatty acid levels (adrenic acid)	8,631 European ancestry individuals	NA	6p21.32	AGPAT1, PPT2	rs3134950-A	0.625	6E-6		0.01	[NR] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
611	chr6_ssto_hap7	3475203	3475204	rs3134950	23362303	Wu JH	2013-01-29	Circ Cardiovasc Genet	Genome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortium.	Oleic acid (18:1n-9) levels	8,961 European ancestry individuals		6p21.32	EGFL8, AGPAT1, PPT2	rs3134950-A	NR	1E-6		0.0945	unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
611	chr6_ssto_hap7	3476120	3476121	rs9267812	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.32		rs9267812-C	0.865	1E-35				Affymetrix [10369434] (imputed)	N
611	chr6_ssto_hap7	3476120	3476121	rs9267812	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.32		rs9267812-C	0.865	2E-29				Affymetrix [10369434] (imputed)	N
611	chr6_ssto_hap7	3476120	3476121	rs9267812	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.32		rs9267812-C	0.865	7E-20				Affymetrix [10369434] (imputed)	N
611	chr6_ssto_hap7	3476120	3476121	rs9267812	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.32		rs9267812-C	0.865	9E-41				Affymetrix [10369434] (imputed)	N
611	chr6_ssto_hap7	3476120	3476121	rs9267812	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p21.32		rs9267812-C	0.865	8E-22				Affymetrix [10369434] (imputed)	N
611	chr6_ssto_hap7	3476120	3476121	rs9267812	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	6p21.32	PPT2	rs9267812-T	0.135386	2E-6		0.021886	[0.013-0.031] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
611	chr6_ssto_hap7	3476120	3476121	rs9267812	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	6p21.32	PPT2	rs9267812-T	0.132705	3E-9		0.022969	[0.015-0.031] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
611	chr6_ssto_hap7	3476120	3476121	rs9267812	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs9267812-T	0.136	1E-30	(Rac GTPase-activating protein 1, RACGAP1.13587.10.3)	0.4	[0.32-0.48] unit decrease	Affymetrix [10572788] (imputed)	N
611	chr6_ssto_hap7	3482237	3482238	rs3096697	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.32	EGFL8	rs3096697-T	0.2054	1E-41		2.58	[NR]	Illumina [242824]	N
611	chr6_ssto_hap7	3484274	3484275	rs1061808	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for LDL particles	115,082 European ancestry individuals	NA	6p21.32		rs1061808-T	0.3719	6E-9		0.0242981	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
611	chr6_ssto_hap7	3484274	3484275	rs1061808	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	6p21.32		rs1061808-G	NR	1E-22		0.0181	[0.015-0.022] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
611	chr6_ssto_hap7	3484274	3484275	rs1061808	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:0_[M+H]1+/Phosphatidylethanolamine_35:0_[M+H]1+/Phosphatidate_37:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	6p21.32		rs1061808-T	NR	1E-15		0.0960224	[0.072-0.12] unit decrease	Affymetrix [87696910] (imputed)	N
611	chr6_ssto_hap7	3484274	3484275	rs1061808	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	6p21.32	AGPAT1	rs1061808-T	0.3698	1E-23		0.25	[0.2-0.3] mmHg decrease	Affymetrix [NR] (imputed)	N
611	chr6_ssto_hap7	3484274	3484275	rs1061808	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs1061808-G	0.631	8E-37	(Tenascin-X, TNXB.5698.60.3)	0.32	[0.28-0.36] unit increase	Affymetrix [10572788] (imputed)	N
611	chr6_ssto_hap7	3484274	3484275	rs1061808	22359512	Demirkan A	2012-02-16	PLoS Genet	Genome-wide association study identifies novel loci associated with circulating phospho- and sphingolipid concentrations.	Phospholipid levels (plasma)	4,034 European ancestry individuals	NA	6p21.32	AGPAT1	rs1061808-?	NR	8E-10	(proportions)	0.9	[NR] % increase	Illumina [NR] (imputed)	N
611	chr6_ssto_hap7	3486272	3486273	rs3130283	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Angina pectoris	30,025 European ancestry cases, 440,906 European ancestry controls, 14,007 East Asian ancestry cases, 145,158 East Asian ancestry controls	NA	6p21.32		rs3130283-C	NR	3E-11		0.0776	[0.055-0.101] unit increase	Affymetrix, Illumina [25842036] (imputed)	N
611	chr6_ssto_hap7	3486272	3486273	rs3130283	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	6p21.32	NR	rs3130283-C	0.8533	6E-27		0.0617	[0.051-0.073] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
611	chr6_ssto_hap7	3486344	3486345	rs114004994	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IFNAR1	5,357 Icelandic ancestry individuals	NA	6p21.32		rs114004994-C	0.04783	3E-14		0.323386	[0.24-0.41] unit decrease	Illumina [7506463] (imputed)	N
611	chr6_ssto_hap7	3486344	3486345	rs114004994	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA	6p21.32	PPT2-EGFL8	rs114004994-?	NR	5E-9		1.80656	[NR] unit decrease	Affymetrix [NR] (imputed)	N
611	chr6_ssto_hap7	3488214	3488215	rs3130284	25987655	Fernandez CA	2015-05-18	Blood	Genome-wide analysis links NFATC2 with asparaginase hypersensitivity.	Asparaginase hypersensitivity in acute lymphoblastic leukemia	3,126 child cases	182 child cases	6p21.32	AGPAT1	rs3130284-C	NR	7E-6		1.464		Affymetrix [NR]	N
611	chr6_ssto_hap7	3493434	3493435	rs2269423	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:0_[M+H]1+/Phosphatidylethanolamine_35:0_[M+H]1+/Phosphatidate_37:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	6p21.32		rs2269423-A	NR	9E-17		0.0987433	[0.075-0.122] unit decrease	Affymetrix [87696910] (imputed)	N
611	chr6_ssto_hap7	3494219	3494220	rs3134945	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.32	RNF5	rs3134945-T	0.2049	2E-40		2.54	[NR]	Illumina [242824]	N
611	chr6_ssto_hap7	3494776	3494778	rs41315238	34782693	Yamada M	2021-11-15	Commun Biol	Genetic loci for lung function in Japanese adults with adjustment for exhaled nitric oxide levels as airway inflammation indicator.	Lung function (FEV1/FVC)	14,061 Japanese ancestry individuals	5,661 Japanese ancestry individuals	6p21.32		rs41315238-A	0.1513	7E-24		0.1542	[0.12-0.18] unit increase	Affymetrix [8587571] (imputed)	N
611	chr6_ssto_hap7	3494884	3494885	rs41268928	26083729	Maruthur NM	2015-06-17	PLoS One	Genetics of Plasma Soluble Receptor for Advanced Glycation End-Products and Cardiovascular Outcomes in a Community-based Population: Results from the Atherosclerosis Risk in Communities Study.	Advanced glycation end-product levels	581 Black individuals, 1,737 European ancestry individuals	NA	6p21.32	RNF5, NOTCH4, AGER	rs41268928-C	0.04	3E-16	(EA)	0.69	unit decrease	Affymetrix [up to 9100000] (imputed)	N
611	chr6_ssto_hap7	3495488	3495489	rs3134943	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.32	RNF5	rs3134943-T	NR	2E-7	(women)	0.0338184	[0.021-0.047] unit increase	Illumina [13520550] (imputed)	N
611	chr6_ssto_hap7	3495758	3495759	rs1062070	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Waist circumference variance	347,158 European ancestry individuals	NA	6p21.32	RNF5	rs1062070-?	NR	7E-12				NR [5554549] (imputed)	N
611	chr6_ssto_hap7	3495758	3495759	rs1062070	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Waist circumference	347,158 European ancestry individuals	NA	6p21.32	RNF5	rs1062070-?	NR	6E-10				NR [5554549] (imputed)	N
611	chr6_ssto_hap7	3496987	3496988	rs2071288	26083729	Maruthur NM	2015-06-17	PLoS One	Genetics of Plasma Soluble Receptor for Advanced Glycation End-Products and Cardiovascular Outcomes in a Community-based Population: Results from the Atherosclerosis Risk in Communities Study.	Advanced glycation end-product levels	581 Black individuals, 1,737 European ancestry individuals	NA	6p21.32	AGER, RNF5, NOTCH4	rs2071288-T	0.1	2E-8	(Blacks)	0.56	unit decrease	Affymetrix [up to 9100000] (imputed)	N
611	chr6_ssto_hap7	3497528	3497529	rs9391855	33766948	Zhu Z	2021-03-25	Eur Respir J	A large-scale genome-wide association analysis of lung function in the Chinese population identifies novel loci and highlights shared genetic etiology with obesity.	Lung function (FEV1/FVC)	100,285 Chinese ancestry individuals	NA	6p21.32		rs9391855-C	0.78	2E-22		0.053	unit decrease	Affymetrix [NR] (imputed)	N
611	chr6_ssto_hap7	3499170	3499171	rs2070600	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein AGER	5,368 Icelandic ancestry individuals	NA	6p21.32		rs2070600-T	0.04774	1E-31		0.516865	[0.43-0.6] unit decrease	Illumina [7506463] (imputed)	N
611	chr6_ssto_hap7	3499170	3499171	rs2070600	33909500	Moll M	2021-04-28	Am J Physiol Lung Cell Mol Physiol	A Systematic Analysis of Protein-altering Exonic Variants in Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease	up to 31,465 European ancestry cases, up to 203,688 European ancestry controls, up to 1,413 African ancestry cases, up to 6,080 African ancestry controls, up to 287 East Asian ancestry cases, up to 7,484 East Asian ancestry controls, up to 61 Hispanic cases, up to 613 Hispanic controls	NA	6p21.32	AGER	rs2070600-C	0.94	1E-16		1.19	[1.15 -1.25]	Illumina [at least 109036]	N
611	chr6_ssto_hap7	3499170	3499171	rs2070600	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs2070600-T	NR	9E-12		1.2804097	[1.19-1.38]	Affymetrix [7846216] (imputed)	N
611	chr6_ssto_hap7	3499170	3499171	rs2070600	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	6p21.32	AGER	rs2070600-C	0.94	1E-17		1.21	[1.15-1.26]	Affymetrix, Illumina [6224355] (imputed)	N
611	chr6_ssto_hap7	3499170	3499171	rs2070600	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	6p21.32	AGER	rs2070600-T	0.0629	2E-45		0.073	[0.063-0.083] unit increase	Affymetrix [19819130] (imputed)	N
611	chr6_ssto_hap7	3499170	3499171	rs2070600	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	6p21.32	AGER	rs2070600-T	0.0629	8E-15		0.0379	[0.028-0.048] unit decrease	Affymetrix [19819130] (imputed)	N
611	chr6_ssto_hap7	3499170	3499171	rs2070600	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	6p21.32	AGER	rs2070600-T	0.0629	3E-189		0.1452	[0.14-0.15] unit increase	Affymetrix [19819130] (imputed)	N
611	chr6_ssto_hap7	3499170	3499171	rs2070600	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	6p21.32	AGER	rs2070600-T	0.0629	5E-11		0.0318	[0.022-0.041] unit increase	Affymetrix [19819130] (imputed)	N
611	chr6_ssto_hap7	3499170	3499171	rs2070600	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	AGER	rs2070600-T	0.067	4E-33	(Advanced glycosylation end product-specific receptor, soluble, AGER.4125.52.2)	0.57	[0.47-0.67] unit decrease	Affymetrix [10572788] (imputed)	N
611	chr6_ssto_hap7	3499170	3499171	rs2070600	28369058	Folkersen L	2017-04-03	PLoS Genet	Mapping of 79 loci for 83 plasma protein biomarkers in cardiovascular disease.	Blood protein levels in cardiovascular risk	3,394 European ancestry individuals	2,639 individuals	6p21.32	AGER	rs2070600-T	0.04	5E-12		0.37	unit decrease	Illumina [5270624] (imputed)	N
611	chr6_ssto_hap7	3499170	3499171	rs2070600	28166215	Hobbs BD	2017-02-06	Nat Genet	Genetic loci associated with chronic obstructive pulmonary disease overlap with loci for lung function and pulmonary fibrosis.	Chronic obstructive pulmonary disease	11,157 European ancestry cases, 36,699 European ancestry controls, 1,142 African American cases, 2,380 African American controls, 199 Korean ancestry cases, 6,741 Korean ancestry controls, 52 Hispanic cases, 548 Hispanic controls.	12,051 European ancestry cases, 11,111 European ancestry controls, 153 Korean ancestry cases, 205 Korean ancestry controls.	6p21.32	AGER	rs2070600-C	0.95	6E-10		1.24	[1.16-1.32]	Affymetrix, Illumina [NR] (imputed)	N
611	chr6_ssto_hap7	3499170	3499171	rs2070600	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FEV1/FVC)	48,943 European ancestry individuals	57,176 European ancestry individuals, 38,199 individuals.	6p21.32	AGER	rs2070600-T	0.0634	3E-25		0.14	[0.11-0.17] unit increase	Affymetrix [27624732] (imputed)	N
611	chr6_ssto_hap7	3499170	3499171	rs2070600	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	6p21.32	NR	rs2070600-?		3E-22	(AGER)	0.7091	[NR] unit decrease	Illumina [NR]	N
611	chr6_ssto_hap7	3499170	3499171	rs2070600	26030696	Cho MH	2015-06-01	Am J Respir Crit Care Med	A Genome-Wide Association Study of Emphysema and Airway Quantitative Imaging Phenotypes.	Percentage gas trapping	3,243 European ancestry chronic obstructive pulmonary disease cases, 901 African American chronic obstructive pulmonary disease cases,  3,062 European ancestry controls, 2,132 African American controls	NA	6p21.32	AGER	rs2070600-T	NR	4E-9	(All)	0.23	[0.15-0.31] unit decrease	Illumina [6900000] (imputed)	N
611	chr6_ssto_hap7	3499170	3499171	rs2070600	26030696	Cho MH	2015-06-01	Am J Respir Crit Care Med	A Genome-Wide Association Study of Emphysema and Airway Quantitative Imaging Phenotypes.	Emphysema imaging phenotypes	5,385 European ancestry chronic obstructive pulmonary disease cases, 901 African American chronic obstructive pulmonary disease cases, 3,613 European ancestry controls, 2,132 African American controls	NA	6p21.32	AGER	rs2070600-T	NR	5E-9	(%LAA-950, All)	0.14	[-0.07560-0.35560] unit decrease	Illumina [7600000] (imputed)	N
611	chr6_ssto_hap7	3499170	3499171	rs2070600	23284291	Hancock DB	2012-12-20	PLoS Genet	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (smoking interaction)	50,047 European ancestry individuals	NA	6p21.32	AGER	rs2070600-?	NR	1E-21	(FEV1/FVC, Pack-years)			NR [~ 2500000] (imputed)	N
611	chr6_ssto_hap7	3499170	3499171	rs2070600	20010835	Hancock DB	2009-12-13	Nat Genet	Meta-analyses of genome-wide association studies identify multiple loci associated with pulmonary function.	Pulmonary function	20,890 European ancestry individuals	16,178 European ancestry individuals	6p21.32	AGER, PPT2	rs2070600-T	0.04	3E-14	(FEV1/FVC)	1.0	[NR] % increase	Affymetrix, Illumina [2534500] (imputed)	N
611	chr6_ssto_hap7	3499170	3499171	rs2070600	20010834	Repapi E	2009-12-13	Nat Genet	Genome-wide association study identifies five loci associated with lung function.	Pulmonary function	20,288 European ancestry individuals	up to 54,276 European ancestry individuals	6p21.32	AGER	rs2070600-T	0.06	3E-15	(FEV1/FVC)	0.088	[0.066-0.110] s.d. increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
611	chr6_ssto_hap7	3500114	3500115	rs1800624	33766948	Zhu Z	2021-03-25	Eur Respir J	A large-scale genome-wide association analysis of lung function in the Chinese population identifies novel loci and highlights shared genetic etiology with obesity.	Lung function (FEV1/FVC)	100,285 Chinese ancestry individuals	NA	6p21.32		rs1800624-A	0.87	3E-9		0.039	unit increase	Affymetrix [NR] (imputed)	N
611	chr6_ssto_hap7	3500169	3500170	rs1800625	26876947	Saito T	2016-02-11	Biol Psychiatry	Pharmacogenomic Study of Clozapine-Induced Agranulocytosis/Granulocytopenia in a Japanese Population.	Clozapine-induced agranulocytosis/granulocytopenia in treatment-resistant schizophrenia	50 Japanese ancestry cases, 2905 Japanese ancestry controls	NA	6p21.32	ZDHHC20P2, HCG25, HCG26, LST1, MICA, FKBPL, AGPAT1, PBX2, NOTCH4, C6orf10, MHC, HLA-X, HCP5, MSH5, C6orf26	rs1800625-G	0.084	3E-9		3.78	[3.34-4.22]	Illumina [522694]	N
611	chr6_ssto_hap7	3500169	3500170	rs1800625	26546620	Xu CF	2015-11-06	Clin Cancer Res	HLA-B*57:01 Confers Susceptibility to Pazopanib-Associated Liver Injury in Patients with Cancer.	Response to Pazopanib in cancer (hepatotoxicity)	Up to 844 European ancestry cases, up to 325 Asian ancestry cases, up to 19 cases	Up to 811 European ancestry cases, up to 114 Asian ancestry cases, up to 77 cases	6p21.32	AGER	rs1800625-G	NR	8E-9	(Time to ALT>3 x upper limit of normal event)	1.8	[1.5-2.1]	Illumina [6736730] (imputed)	N
611	chr6_ssto_hap7	3501065	3501066	rs201026476	32488134	Auckland K	2020-06-02	Sci Rep	The Human Leukocyte Antigen Locus and Rheumatic Heart Disease Susceptibility in South Asians and Europeans.	Rheumatic heart disease	510 Northern Indian cases, 344 Northern Indian controls, 162 Fijian Indian cases, 147 Fijian Indian controls	150 European ancestry cases, 1,309 European ancestry controls	6p21.32	PBX2	rs201026476-?		3E-10		1.81	[1.51-2.18]	Illumina [6925553] (imputed)	N
611	chr6_ssto_hap7	3501130	3501131	rs169504	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	PBX2, XXbac-BPG300A18.13	rs169504-A	NR	4E-9		0.0216001	[0.014-0.029] unit decrease	Affymetrix [319769] (imputed)	N
611	chr6_ssto_hap7	3501130	3501131	rs169504	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	PBX2, XXbac-BPG300A18.13	rs169504-A	NR	3E-12		0.0279533	[0.02-0.036] unit increase	Affymetrix [323123] (imputed)	N
611	chr6_ssto_hap7	3501130	3501131	rs169504	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Anxiety	at least 23,606 European ancestry cases, at least 113,351 European ancestry controls	624,615 European ancestry cases, 1,310,854 European ancestry controls	6p21.32	PBX2, XXbac, BPG300A18.13	rs169504-C	0.1481	5E-28		0.03352553	[0.027-0.04] unit increase	NR [9417325] (imputed)	N
611	chr6_ssto_hap7	3501130	3501131	rs169504	29899525	Klimentidis YC	2018-06-13	Int J Obes (Lond)	Genome-wide association study of habitual physical activity in over 377,000 UK Biobank participants identifies multiple variants including CADM2 and APOE.	Moderate to vigorous physical activity levels	377,234 European ancestry individuals	NA	6p21.32	PBX2	rs169504-C	0.81	5E-11	(model 2)	0.018	unit increase	Affymetrix [11800000] (imputed)	N
611	chr6_ssto_hap7	3501130	3501131	rs169504	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p21.32	NR	rs169504-?	NR	5E-9		0.0694	[0.046-0.093] unit increase	Illumina [at least 560000] (imputed)	N
611	chr6_ssto_hap7	3502010	3502011	rs204995	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	6p21.32	NR	rs204995-A	0.736056	3E-13		0.0272612	[0.02-0.034] unit increase	Affymetrix [16577424] (imputed)	N
611	chr6_ssto_hap7	3502723	3502724	rs204994	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RACGAP1	5,360 Icelandic ancestry individuals	NA	6p21.32		rs204994-T	0.1627	4E-63		0.423554	[0.37-0.47] unit increase	Illumina [7506463] (imputed)	N
611	chr6_ssto_hap7	3503306	3503307	rs204993	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Receptor for advanced glycosylation end products levels	21,758 European ancestry individuals	9,173 individuals	6p21.32		rs204993-A	0.74	1E-48		0.1449	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
611	chr6_ssto_hap7	3503306	3503307	rs204993	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 142,336 Japanese ancestry controls	NA	6p21.32	PBX2	rs204993-?	NR	6E-9		0.0600478	[0.04-0.08] unit decrease	Illumina [19707525] (imputed)	N
611	chr6_ssto_hap7	3503306	3503307	rs204993	21804548	Hirota T	2011-07-31	Nat Genet	Genome-wide association study identifies three new susceptibility loci for adult asthma in the Japanese population.	Asthma	1,532 Japanese ancestry cases, 3,304 Japanese ancestry controls	5,639 Japanese ancestry cases, 24,608 Japanese ancestry controls	6p21.32	PBX2	rs204993-A	0.58	2E-15		1.17	[1.12-1.21]	Illumina [458847]	N
611	chr6_ssto_hap7	3505089	3505090	rs2856437	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cervical cancer	6,563 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs2856437-A	0.063203	1E-15		1.3032712	NR	Affymetrix [7846216] (imputed)	N
611	chr6_ssto_hap7	3506044	3506045	rs176095	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Atopic dermatitis	2,079 European ancestry cases, 3,867 European ancestry controls	NA	6p21.32	GPSM3	rs176095-G	NR	3E-7		1.3020833	[1.18-1.44]	Affymetrix, Illumina, Perlegen [up to 5493100] (imputed)	N
611	chr6_ssto_hap7	3506044	3506045	rs176095	23042114	Hirota T	2012-10-07	Nat Genet	Genome-wide association study identifies eight new susceptibility loci for atopic dermatitis in the Japanese population.	Atopic dermatitis	1,472 Japanese ancestry cases, 7,971 Japanese ancestry controls	1,856 Japanese ancestry cases, 7,021 Japanese ancestry controls	6p21.32	GPSM3	rs176095-T	0.81	8E-20		1.4	[1.30-1.51]	Illumina [606164]	N
611	chr6_ssto_hap7	3507681	3507682	rs3134605	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	GPSM3	rs3134605-C	NR	8E-9		0.0195758	[0.013-0.026] unit decrease	Affymetrix [319769] (imputed)	N
611	chr6_ssto_hap7	3507681	3507682	rs3134605	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	GPSM3	rs3134605-C	NR	3E-8		0.0188346	[0.012-0.025] unit decrease	Affymetrix [319769] (imputed)	N
611	chr6_ssto_hap7	3507681	3507682	rs3134605	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	GPSM3	rs3134605-C	NR	1E-8		0.0196385	[0.013-0.026] unit decrease	Affymetrix [321169] (imputed)	N
611	chr6_ssto_hap7	3507681	3507682	rs3134605	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	6p21.32	GPSM3	rs3134605-T	0.7974	7E-17		0.0033	[0.0025-0.0041] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
611	chr6_ssto_hap7	3507878	3507879	rs2269420	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Pancreatic cancer	768 White British ancestry cases, 264,559 White British ancestry controls	NA	6p21.32		rs2269420-?	NR	5E-6		550.195	[547.48-552.91]	NR [663102]	N
611	chr6_ssto_hap7	3507878	3507879	rs2269420	28031287	Sasayama D	2016-11-26	Hum Mol Genet	Genome-wide quantitative trait loci mapping of the human cerebrospinal fluid proteome.	Cerebrospinal fluid biomarker levels	133 Japanese ancestry individuals.	NA	6p21.32	NR	rs2269420-?	NR	3E-9	(Complement factor B)			Illumina [514227]	N
611	chr6_ssto_hap7	3509121	3509122	rs3132940	32534018	Liu X	2020-06-10	Brain Behav Immun	Genetic factors underlying the bidirectional relationship between autoimmune and mental disorders - findings from a Danish population-based study.	Autoimmune traits	1,383 Danish ancestry cases, 62,656 Danish ancestry controls	NA	6p21.32	NR	rs3132940-T	0.15	1E-15		0.62	[0.55-0.70]	NR [7721839] (imputed)	N
611	chr6_ssto_hap7	3509121	3509122	rs3132940	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (non-Lofgren's syndrome without extrapulmonary manifestations)	451 Swedish ancestry cases, 2,086 Swedish ancestry controls	NA	6p21.32	GPSM3, NOTCH4, AGER, MICB, NFKBIL1, LTA, NCR3, AIF1, TNXB, CREBL1, FKBPL, PRRT1	rs3132940-A	0.203	7E-6		1.531	[1.282-1.829]	Illumina [118177]	N
611	chr6_ssto_hap7	3509155	3509156	rs204990	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Scarlet fever	6,812 European ancestry cases, 113,837 European ancestry controls	NA	6p21.32	NR	rs204990-?	NR	7E-9		0.1298	[0.086-0.173] unit decrease	Illumina [at least 560000] (imputed)	N
611	chr6_ssto_hap7	3511473	3511474	rs13215567	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6p21.32	GPSM3, NOTCH4	rs13215567-A	0.049	1E-6	(IGFBP-3 )	0.03	[NR] ng/mL increase	Illumina [899892]	N
611	chr6_ssto_hap7	3513169	3513170	rs2071278	23028341	Yang X	2012-09-13	PLoS Genet	Genome-wide association study for serum complement C3 and C4 levels in healthy Chinese subjects.	Complement C3 and C4 levels	1,999 Han Chinese ancestry male individuals	1,496 Han Chinese ancestry male individuals	6p21.32	HLA-DRA	rs2071278-G	0.27	4E-72	(Serum level of C4)	0.13	[0.11-0.15] g/L decrease	Illumina [1940245] (imputed)	N
611	chr6_ssto_hap7	3514110	3514111	rs8192575	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	NOTCH4	rs8192575-G	NR	3E-14		0.0413468	[0.031-0.052] unit increase	Affymetrix [319769] (imputed)	N
611	chr6_ssto_hap7	3514110	3514111	rs8192575	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	NOTCH4	rs8192575-G	NR	1E-14		0.0418274	[0.031-0.052] unit increase	Affymetrix [319769] (imputed)	N
611	chr6_ssto_hap7	3516508	3516509	rs3134942	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.32	NOTCH4, GPSM3	rs3134942-T	0.1076459	1E-16	(EA, MHC class I polypeptide-related sequence A)	0.5791	[0.44-0.71] unit increase	Affymetrix [509946]	N
611	chr6_ssto_hap7	3518144	3518145	rs9267822	33941608	Khan A	2021-05-03	J Am Soc Nephrol	Medical Records-Based Genetic Studies of the Complement System.	Complement C4 levels	3,247 European ancestry individuals, 600 African ancestry individuals, 151 East Asian ancestry individuals	NA	6p21.32	C4	rs9267822-C	0.05	6E-7	(AA)	0.64	[0.40-0.87] unit increase	NR [NR] (imputed)	N
611	chr6_ssto_hap7	3518144	3518145	rs9267822	33941608	Khan A	2021-05-03	J Am Soc Nephrol	Medical Records-Based Genetic Studies of the Complement System.	Complement C4 levels	3,247 European ancestry individuals, 600 African ancestry individuals, 151 East Asian ancestry individuals	NA	6p21.32	C4	rs9267822-C	0.02	6E-17		0.65	[0.51-0.78] unit increase	NR [NR] (imputed)	N
611	chr6_ssto_hap7	3518144	3518145	rs9267822	33941608	Khan A	2021-05-03	J Am Soc Nephrol	Medical Records-Based Genetic Studies of the Complement System.	Complement C4 levels	3,247 European ancestry individuals, 600 African ancestry individuals, 151 East Asian ancestry individuals	NA	6p21.32	C4	rs9267822-C	0.01	7E-9	(EA)	0.61	[0.41-0.80] unit increase	NR [NR] (imputed)	N
611	chr6_ssto_hap7	3518811	3518812	rs3132935	23894747	Aberg KA	2013-02-01	JAMA Psychiatry	A comprehensive family-based replication study of schizophrenia genes.	Schizophrenia	11,185 European ancestry cases, 10,768 European ancestry controls	1,262 African American ancestry individuals, 2,740 European ancestry individuals, 2,296 Asian ancestry individuals	6p21.32	NOTCH4	rs3132935-?	0.82	5E-7	(EA)	1.25	[NR]	NR [1085772] (imputed)	N
611	chr6_ssto_hap7	3518811	3518812	rs3132935	23894747	Aberg KA	2013-02-01	JAMA Psychiatry	A comprehensive family-based replication study of schizophrenia genes.	Schizophrenia	11,185 European ancestry cases, 10,768 European ancestry controls	1,262 African American ancestry individuals, 2,740 European ancestry individuals, 2,296 Asian ancestry individuals	6p21.32	NOTCH4	rs3132935-?	0.82	3E-7		1.25	[NR]	NR [1085772] (imputed)	N
611	chr6_ssto_hap7	3519419	3519420	rs2071277	22694956	Cipriani V	2012-06-13	Hum Mol Genet	Genome-wide association study of age-related macular degeneration identifies associated variants in the TNXB-FKBPL-NOTCH4 region of chromosome 6p21.3.	Age-related macular degeneration	893 European ancestry cases, 2,199 European ancestry controls	1,411 European ancestry cases, 1,431 European ancestry controls	6p21.32	NOTCH4	rs2071277-C	0.219	2E-11		1.3	[1.20-1.41]	Illumina [2272849] (imputed)	N
611	chr6_ssto_hap7	3520729	3520730	rs3131296	19571808	Stefansson H	2009-07-01	Nature	Common variants conferring risk of schizophrenia.	Schizophrenia	2,663 European ancestry cases, 13,498 European ancestry controls	10,282 European ancestry cases, 21,093 European ancestry controls	6p21.32	MHC, NOTCH4	rs3131296-G	0.87	2E-10		1.19	[NR]	Illumina [314868]	N
611	chr6_ssto_hap7	3520974	3520975	rs9267823	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6p21.32	NOTCH4	rs9267823-C	0.252	3E-12		0.018297182	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
611	chr6_ssto_hap7	3521336	3521337	rs138753323	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.32		rs138753323-C	0.02776400000000001	7E-13		1.0961492	[1.06-1.12]	Affymetrix, Illumina [9851866] (imputed)	N
611	chr6_ssto_hap7	3521785	3521786	rs2849017	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	6p21.32	NOTCH4	rs2849017-G	0.0713240000000001	2E-10		0.027348002	[0.019-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
611	chr6_ssto_hap7	3521785	3521786	rs2849017	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	6p21.32	NOTCH4	rs2849017-G	0.071334	5E-15		0.033472747	[0.025-0.042] unit decrease	Affymetrix [93095623] (imputed)	N
611	chr6_ssto_hap7	3522694	3522695	rs3130290	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of saturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	6p21.32		rs3130290-T	0.396568	2E-14		0.0317416	[0.024-0.04] unit decrease	NR [11722792] (imputed)	N
611	chr6_ssto_hap7	3523942	3523943	rs206017	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:0_[M+H]1+/Phosphatidylethanolamine_35:0_[M+H]1+/Phosphatidate_37:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	6p21.32		rs206017-G	NR	2E-10		0.0746241	[0.052-0.098] unit decrease	Affymetrix [87696910] (imputed)	N
611	chr6_ssto_hap7	3524513	3524514	rs3132947	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Hip circumference variance	346,781 European ancestry individuals	NA	6p21.32	GPSM3	rs3132947-?	NR	5E-11				NR [5554549] (imputed)	N
611	chr6_ssto_hap7	3524513	3524514	rs3132947	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Hip circumference	346,781 European ancestry individuals	NA	6p21.32	GPSM3	rs3132947-?	NR	3E-24				NR [5554549] (imputed)	N
611	chr6_ssto_hap7	3524513	3524514	rs3132947	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Body mass index variance	346,393 European ancestry individuals	NA	6p21.32	GPSM3	rs3132947-?	NR	2E-13				NR [5554549] (imputed)	N
611	chr6_ssto_hap7	3524513	3524514	rs3132947	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Body mass index	346,393 European ancestry individuals	NA	6p21.32	GPSM3	rs3132947-?	NR	9E-15				NR [5554549] (imputed)	N
611	chr6_ssto_hap7	3527435	3527436	rs16869834	33941608	Khan A	2021-05-03	J Am Soc Nephrol	Medical Records-Based Genetic Studies of the Complement System.	Complement C4 levels	3,247 European ancestry individuals, 600 African ancestry individuals, 151 East Asian ancestry individuals	NA	6p21.32	C4	rs16869834-A	0.05	8E-20		0.44	[0.36-0.51] unit increase	NR [NR] (imputed)	N
611	chr6_ssto_hap7	3527435	3527436	rs16869834	33941608	Khan A	2021-05-03	J Am Soc Nephrol	Medical Records-Based Genetic Studies of the Complement System.	Complement C4 levels	3,247 European ancestry individuals, 600 African ancestry individuals, 151 East Asian ancestry individuals	NA	6p21.32	C4	rs16869834-A	0.05	2E-18	(EA)	0.47	[0.37-0.56] unit increase	NR [NR] (imputed)	N
611	chr6_ssto_hap7	3527435	3527436	rs16869834	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs16869834-G	0.047	5E-27	(Complement C4, C4A.C4B.4481.34.2)	0.62	[0.5-0.74] unit decrease	Affymetrix [10572788] (imputed)	N
611	chr6_ssto_hap7	3527622	3527623	rs2071286	25030430	Zignego AL	2014-07-17	Genes Immun	Genome-wide association study of hepatitis C virus- and cryoglobulin-related vasculitis.	Mixed cryoglobulinemia vasculitis in chronic hepatitis C infection	356 European ancestry cases, 447 European ancestry controls	92 European ancestry cases, 179 European ancestry controls	6p21.32	NOTCH4	rs2071286-?	0.29	2E-8		2.15	[NR]	Illumina [899641]	N
611	chr6_ssto_hap7	3527872	3527873	rs3131294	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	NOTCH4	rs3131294-A	NR	1E-10		0.025777	[0.018-0.034] unit increase	Affymetrix [321016] (imputed)	N
611	chr6_ssto_hap7	3527967	3527968	rs206019	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	NOTCH4	rs206019-T	NR	5E-13		0.0300963	[0.022-0.038] unit increase	Affymetrix [319769] (imputed)	N
611	chr6_ssto_hap7	3527967	3527968	rs206019	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	NOTCH4	rs206019-T	NR	2E-8		0.0236482	[0.015-0.032] unit increase	Affymetrix [321114] (imputed)	N
611	chr6_ssto_hap7	3527967	3527968	rs206019	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	NOTCH4	rs206019-T	NR	2E-9		0.0253993	[0.017-0.034] unit increase	Affymetrix [321169] (imputed)	N
611	chr6_ssto_hap7	3528908	3528909	rs206016	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	NOTCH4	rs206016-A	NR	2E-13		0.030587	[0.022-0.039] unit increase	Affymetrix [319769] (imputed)	N
611	chr6_ssto_hap7	3529243	3529244	rs41270472	28334935	Raffield LM	2017-05-15	Hum Mol Genet	Genome-wide association study of iron traits and relation to diabetes in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL): potential genomic intersection of iron and glucose regulation?	Iron status biomarkers (iron levels)	12,580 Hispanic/Latino individuals	NA	6p21.32	NOTCH4	rs41270472-A	NR	8E-7		0.286	[0.17-0.4] unit decrease	Illumina [27700000] (imputed)	N
611	chr6_ssto_hap7	3532073	3532074	rs404860	21804548	Hirota T	2011-07-31	Nat Genet	Genome-wide association study identifies three new susceptibility loci for adult asthma in the Japanese population.	Asthma	1,532 Japanese ancestry cases, 3,304 Japanese ancestry controls	5,639 Japanese ancestry cases, 24,608 Japanese ancestry controls	6p21.32	NOTCH4	rs404860-A	0.50	4E-23		1.21	[1.16-1.25]	Illumina [458847]	N
611	chr6_ssto_hap7	3532433	3532434	rs3134798	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C4A;C4B	5,362 Icelandic ancestry individuals	NA	6p21.32		rs3134798-G	0.3666	1E-47		0.277923	[0.24-0.32] unit increase	Illumina [7506463] (imputed)	N
611	chr6_ssto_hap7	3533973	3533974	rs438475	26503763	Song J	2015-10-27	Mol Psychiatry	Genome-wide association study identifies SESTD1 as a novel risk gene for lithium-responsive bipolar disorder.	Objective response to lithium treatment in bipolar disorder	323 European ancestry responder cases, 853 European ancestry non-responder cases	NA	6p21.32	NOTCH4	rs438475-A	0.12	2E-6		2.04	[NR]	Affymetrix, Illumina [> 8000000] (imputed)	N
611	chr6_ssto_hap7	3534600	3534601	rs2256594	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (glucocorticoids)	13,102 East Asian ancestry cases, 165,624 East Asian ancestry controls	NA	6p21.32		rs2256594-G	0.381444507	1E-9		0.081218176	[0.055-0.107] unit decrease	Illumina [13429980] (imputed)	N
611	chr6_ssto_hap7	3535365	3535366	rs8192589	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	NOTCH4	rs8192589-T	NR	7E-14		0.0321787	[0.024-0.041] unit increase	Affymetrix [323123] (imputed)	N
611	chr6_ssto_hap7	3535450	3535451	rs431722	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Joint mobility (Beighton score)	64,143 European ancestry individuals	NA	6p21.32	NOTCH4	rs431722-?	NR	2E-12		0.08	[0.102-0.058] unit decrease	Illumina [12039492] (imputed)	N
611	chr6_ssto_hap7	3535511	3535512	rs8192590	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	6p21.32	PRRC2A	rs8192590-C	0.8421	1E-8	(S1P d16:1)	0.1004	[0.066-0.135] unit increase	Illumina [~ 47000000] (imputed)	N
611	chr6_ssto_hap7	3536111	3536112	rs422951	32771030	Tangtanatakul P	2020-08-08	Arthritis Res Ther	Meta-analysis of genome-wide association study identifies FBN2 as a novel locus associated with systemic lupus erythematosus in Thai population.	Systemic lupus erythematosus	487 Thai cases, 1,606 Thai controls	405 Thai cases, 1,590 Thai controls	6p21.32	NOTCH4	rs422951-G	0.36	7E-7		1.3345	[NR]	Illumina [421909] (imputed)	N
611	chr6_ssto_hap7	3536111	3536112	rs422951	25802187	Jiang DK	2015-04-28	Hepatology	Genetic variants in five novel loci including CFB and CD40 predispose to chronic hepatitis B.	Chronic hepatitis B infection	2,514 Chinese ancestry cases, 1,130 Chinese ancestry controls	6,600 Chinese ancestry cases, 8,127 Chinese ancestry controls	6p21.32	NOTCH4	rs422951-G	0.81	5E-16		1.27	[1.20-1.35]	Illumina [3680900] (imputed)	N
611	chr6_ssto_hap7	3536368	3536369	rs520692	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling worry	372,869 European ancestry individuals	NA	6p21.32	C4A	rs520692-T	0.289258	2E-10		6.342	unit decrease	NR [10847151] (imputed)	N
611	chr6_ssto_hap7	3536551	3536552	rs8192585	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		NOTCH4	rs8192585-?	NR	3E-10	(male)	2.46406	[NR] unit decrease	Affymetrix [NR] (imputed)	N
611	chr6_ssto_hap7	3536551	3536552	rs8192585	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		NOTCH4	rs8192585-?	NR	2E-15		2.03144	[NR] unit decrease	Affymetrix [NR] (imputed)	N
611	chr6_ssto_hap7	3536760	3536761	rs415929	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.32		rs415929-T	0.711	3E-23				Affymetrix [10369434] (imputed)	N
611	chr6_ssto_hap7	3536760	3536761	rs415929	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	6p21.32	C4A	rs415929-T	0.290043	4E-8		5.51	z score decrease	NR [10847151] (imputed)	N
611	chr6_ssto_hap7	3537716	3537719	rs35565902	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6p21.32	NOTCH4	rs35565902-C	0.29421	1E-14		0.021433193	[0.016-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
611	chr6_ssto_hap7	3537716	3537719	rs35565902	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	6p21.32	NOTCH4	rs35565902-C	0.294	2E-14		0.02999182	[0.022-0.038] unit decrease	Affymetrix [~ 2500000] (imputed)	N
611	chr6_ssto_hap7	3537756	3537757	rs3132946	23583980	Fingerlin TE	2013-04-14	Nat Genet	Genome-wide association study identifies multiple susceptibility loci for pulmonary fibrosis.	Interstitial lung disease	1,161 European ancestry cases, 4,683 European ancestry controls	876 European ancestry cases, 1,890 European ancestry controls	6p21.32	NR	rs3132946-A	0.12	8E-6		1.38	[1.21-1.57]	Illumina [439828]	N
611	chr6_ssto_hap7	3538134	3538135	rs443198	21779181	Gorlova O	2011-07-14	PLoS Genet	Identification of novel genetic markers associated with clinical phenotypes of systemic sclerosis through a genome-wide association strategy.	Systemic sclerosis	2,296 European ancestry cases, 5,172 European ancestry controls	3,175 European ancestry cases, 4,210 European ancestry controls	6p21.32	NOTCH4	rs443198-?	0.63	9E-21	(ACA positive)	1.82	[1.59-2.04]	Illumina [NR] (imputed)	N
611	chr6_ssto_hap7	3538348	3538349	rs3134931	23620142	Reiner AP	2013-04-24	Hum Mol Genet	Genome-wide and gene-centric analyses of circulating myeloperoxidase levels in the charge and care consortia.	Circulating myeloperoxidase levels (serum)	9,305 European ancestry individuals		6p21.32	HLA, NOTCH4, C2	rs3134931-T	0.73	1E-8		0.05	[0.030-0.070] unit decrease	Affymetrix, Illumina [2397181]	N
611	chr6_ssto_hap7	3538769	3538770	rs434841	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	NOTCH4	rs434841-A	NR	4E-8		0.0169017	[0.011-0.023] unit decrease	Affymetrix [319769] (imputed)	N
611	chr6_ssto_hap7	3538891	3538892	rs149361718	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.32	NR	rs149361718-A	0.01394	1E-10	(KRT10)	0.7834	NR unit increase	Illumina [1671387] (imputed)	N
612	chr6_ssto_hap7	3539067	3539068	rs3830041	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	150,068 East Asian ancestry individuals	NA	6p21.32		rs3830041-T	0.185228	9E-25		0.0457917	[0.037-0.055] unit increase	Illumina [13478956] (imputed)	N
612	chr6_ssto_hap7	3539067	3539068	rs3830041	31826910	Lu Y	2019-12-11	Cancer Epidemiol Biomarkers Prev	Identification of novel loci and new risk variant in known loci for colorectal cancer risk in East Asians.	Colorectal cancer	23,572 East Asian ancestry cases, 48,700 East Asian ancestry controls	58,131 European ancestry cases, 67,347 European ancestry controls	6p21.32		rs3830041-T	0.14	4E-9	(East Asian)	1.15	[1.10-1.21]	Affymetrix, Illumina [up to 47000000] (imputed)	N
612	chr6_ssto_hap7	3539067	3539068	rs3830041	30529582	Lu Y	2018-12-06	Gastroenterology	Large-scale Genome-wide Association Study of East Asians Identifies Loci Associated With Risk for Colorectal Cancer.	Colorectal cancer	22,775 East Asian ancestry cases, 47,731 East Asian ancestry controls	NA	6p21.32	NOTCH4	rs3830041-T	0.14	2E-8		1.16	[1.10-1.21]	Affymetrix, Illumina [up to 10700000] (imputed)	N
612	chr6_ssto_hap7	3539185	3539186	rs375244	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p21.32	NOTCH4	rs375244-A	0.28	3E-6	(Turkish)	1.57	[1.30-1.90]	Illumina [up to 547389]	N
612	chr6_ssto_hap7	3539458	3539459	rs367398	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p21.32		rs367398-G	0.694	2E-11				Affymetrix [10369434] (imputed)	N
612	chr6_ssto_hap7	3539945	3539946	rs16869875	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	Systemic lupus erythematosus	1,639 East Asian ancestry cases, 2,410 East Asian ancestry controls	NA			rs16869875-T	NR	2E-16		0.4377	[0.33-0.54] unit increase	Illumina [NR] (imputed)	N
612	chr6_ssto_hap7	3540059	3540060	rs3096702	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	6p21.32	NR	rs3096702-A	0.38	1E-11		1.06	[1.04-1.07]	Illumina [20370935] (imputed)	N
612	chr6_ssto_hap7	3540059	3540060	rs3096702	23535732	Eeles RA	2013-04-01	Nat Genet	Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array.	Prostate cancer	11,085 European ancestry cases, 11,463 European ancestry controls	19,662 European ancestry cases, 19,715 European ancestry controls	6p21.32	CYP21A2, DOM3Z, FKBPL, HLA-DRB6, HCG23, LOC10029, ATF6B, LOC100293534, AGER, LOC100507547, MIR1236, PPT2, PPT2-EGF, HLA-DRA, PPT2-EGFL8, RNF5, RNF5P1, CFB, RDBP, TNXA, TNXB, HLA-DQB1, NOTCH4, SKIV2L, STK19, GPSM3, PBX2, LOC10050, EGFL8, AGPAT1, C2, C4A, PRRT1, BTNL2, C4B, HLA-DRB5, C6orf10, HLA-DRB1, CYP21A1P, HLA-DQA1	rs3096702-A	0.4	5E-9		1.07	[1.04-1.10]	Illumina [~ 2600000] (imputed)	N
612	chr6_ssto_hap7	3542323	3542324	rs17208153	33941608	Khan A	2021-05-03	J Am Soc Nephrol	Medical Records-Based Genetic Studies of the Complement System.	Complement C4 levels	3,247 European ancestry individuals, 600 African ancestry individuals, 151 East Asian ancestry individuals	NA	6p21.32	C4	rs17208153-C	0.11	2E-11		0.24	[0.18-0.30] unit increase	NR [NR] (imputed)	N
612	chr6_ssto_hap7	3542323	3542324	rs17208153	33941608	Khan A	2021-05-03	J Am Soc Nephrol	Medical Records-Based Genetic Studies of the Complement System.	Complement C4 levels	3,247 European ancestry individuals, 600 African ancestry individuals, 151 East Asian ancestry individuals	NA	6p21.32	C4	rs17208153-C	0.08	7E-11	(EA)	0.28	[0.20-0.35] unit increase	NR [NR] (imputed)	N
612	chr6_ssto_hap7	3542979	3542980	rs9267853	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p21.32	NR	rs9267853-?	NR	3E-25		0.131	[0.11-0.16] unit increase	Illumina [at least 560000] (imputed)	N
612	chr6_ssto_hap7	3544948	3544949	rs3132948	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Bronchiectasis	2,888 European ancestry cases, 440,263 European ancestry controls, 241 East Asian ancestry cases, 161,803 East Asian ancestry controls	NA	6p21.32		rs3132948-G	NR	7E-9		0.1526	[0.1-0.2] unit decrease	Affymetrix, Illumina [25839694] (imputed)	N
612	chr6_ssto_hap7	3546874	3546875	rs377763	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Prostate cancer	7,438 White British ancestry cases, 118,206 White British ancestry controls	NA	6p21.32		rs377763-?	NR	9E-6		0.908716	[0.87-0.95]	NR [680312]	N
612	chr6_ssto_hap7	3546874	3546875	rs377763	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling nervous	373,121 European ancestry individuals	NA	6p21.32	NR	rs377763-A	0.216145	1E-10		6.43	z score decrease	NR [10847151] (imputed)	N
612	chr6_ssto_hap7	3548981	3548982	rs6941515	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on myeloid Dendritic Cell	2,872 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs6941515-T	0.5683199999999999	8E-12		0.2226	[0.16-0.29] unit decrease	Illumina [17926605] (imputed)	N
612	chr6_ssto_hap7	3549256	3549257	rs3096692	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	NOTCH4	rs3096692-G	NR	3E-12		0.0293978	[0.021-0.038] unit decrease	Affymetrix [323858] (imputed)	N
612	chr6_ssto_hap7	3549256	3549257	rs3096692	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	NOTCH4	rs3096692-G	NR	2E-10		0.0269591	[0.019-0.035] unit decrease	Affymetrix [127266] (imputed)	N
612	chr6_ssto_hap7	3549320	3549321	rs443863	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.32	NR	rs443863-?	NR	6E-9				Affymetrix [~ 8270000] (imputed)	N
612	chr6_ssto_hap7	3552548	3552549	rs9279532	31577861	Dai J	2019-10-31	Int J Cancer	Genome-wide association study of INDELs identified four novel susceptibility loci associated with lung cancer risk.	Lung cancer	20,871 European ancestry cases, 15,971 European ancestry controls, 2,331 Chinese ancestry cases, 3,077 Chinese ancestry controls	NA	6p21.32	NOTCH4	rs9279532-D	0.12	3E-7		1.11	[1.07-0.94]	Illumina [484196]	N
612	chr6_ssto_hap7	3552610	3552611	rs28732180	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p21.32	NR	rs28732180-?	NR	1E-15		0.1765	[0.13-0.22] unit increase	Illumina [at least 560000] (imputed)	N
612	chr6_ssto_hap7	3552773	3552774	rs549182	24837172	Juyal G	2014-05-16	Gut	Genome-wide association scan in north Indians reveals three novel HLA-independent risk loci for ulcerative colitis.	Ulcerative colitis	603 North Indian ancestry cases, 622 North Indian ancestry controls	733 North Indian ancestry cases, 1,148 North Indian ancestry controls	6p21.32	NOTCH4	rs549182-A	0.11	8E-10		1.59	[1.37-1.85]	Illumina [480391]	N
612	chr6_ssto_hap7	3552838	3552839	rs9267911	23266558	Yamazaki K	2012-12-21	Gastroenterology	A genome-wide association study identifies 2 susceptibility Loci for Crohn's disease in a Japanese population.	Crohn's disease	372 Japanese ancestry cases,3,389 Japanese ancestry controls	Up to 1,151 Japanese ancestry cases, up to 15,800 Japanese ancestry controls	6p21.32	PBX2, NOTCH4	rs9267911-T	0.479	3E-7		1.5	[1.29-1.76]	Illumina [4929034] (imputed)	N
612	chr6_ssto_hap7	3554216	3554217	rs3134938	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p21.32	NOTCH4	rs3134938-C	0.832	8E-7		0.076	[0.047-0.105] unit decrease	Affymetrix, Illumina [7374092] (imputed)	N
612	chr6_ssto_hap7	3554267	3554268	rs3134937	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	NOTCH4	rs3134937-T	NR	7E-9		0.0212317	[0.014-0.028] unit decrease	Affymetrix [323858] (imputed)	N
612	chr6_ssto_hap7	3554909	3554910	rs3130304	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	NOTCH4	rs3130304-A	NR	4E-8		0.0203511	[0.013-0.028] unit increase	Affymetrix [323123] (imputed)	N
612	chr6_ssto_hap7	3555121	3555122	rs416352	30294719	Zeng Y	2018-08-24	JAMA Netw Open	Sex Differences in Genetic Associations With Longevity.	Longevity	564 Han Chinese ancestry male centenarian cases, 1,614 Han Chinese ancestry female centenarian cases, 773 Han Chinese ancestry male middle-aged controls, 1,526 Han Chinese ancestry female middle-aged controls	NA	6p21.32	NOTCH4	rs416352-?	0.51	8E-6	(female)	1.261	[1.14-1.40]	Illumina [5595657] (imputed)	N
612	chr6_ssto_hap7	3556052	3556053	rs424232	23936387	Ostensson M	2013-08-02	PLoS One	A possible mechanism behind autoimmune disorders discovered by genome-wide linkage and association analysis in celiac disease.	Celiac disease	206 European ancestry trios	NA	6p21.32	HLA	rs424232-C		5E-21				Illumina [944512] (imputed)	N
612	chr6_ssto_hap7	3556973	3556974	rs186298790	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	6p21.32	NR	rs186298790-?	NR	4E-11	(MIC-A)	3.61094	[2.54-4.68] unit increase	Illumina [11901634] (imputed)	N
612	chr6_ssto_hap7	3557054	3557055	rs570559246	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Treatment or medication use - sulfasalazine (UKB data field 20003_1140909702)	866 European ancestry cases, 455,410 European ancestry controls	NA	6p21.32		rs570559246-C	0.003586	7E-10		3.33	[2.27-4.39] unit increase	NR [11842647] (imputed)	N
612	chr6_ssto_hap7	3557179	3557180	rs380911	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.32	Intergenic	rs380911-?		9E-6		1.04	[1.02-1.06]	Illumina [7645193] (imputed)	N
612	chr6_ssto_hap7	3557179	3557180	rs380911	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.32	Intergenic	rs380911-?		3E-6		1.51	[1.27-1.80]	Illumina [7645193] (imputed)	N
612	chr6_ssto_hap7	3557500	3557502	rs28993469	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	6p21.32		rs28993469-C	0.261024	4E-12		0.019322034	[0.014-0.025] unit increase	Affymetrix [93095623] (imputed)	N
612	chr6_ssto_hap7	3557589	3557590	rs507778	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	6p21.32	intergenic	rs507778-T	0.3256	1E-24		0.03915988	[0.032-0.047] unit decrease	Affymetrix [~ 2500000] (imputed)	N
612	chr6_ssto_hap7	3557589	3557590	rs507778	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	6p21.32	intergenic	rs507778-T	0.3257	2E-29		0.04307319	[0.036-0.051] unit decrease	Affymetrix [~ 2500000] (imputed)	N
612	chr6_ssto_hap7	3558087	3558088	rs28732181	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Strep throat	52,487 European ancestry cases, 22,017 European ancestry controls	NA	6p21.32	NR	rs28732181-?	NR	6E-6		0.0381	[0.022-0.055] unit decrease	Illumina [at least 560000] (imputed)	N
612	chr6_ssto_hap7	3558535	3558536	rs419132	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	Triglycerides	up to 62,166 European ancestry individuals	NA	6p21.32	HLA-area	rs419132-G	0.2	5E-12		0.056	[0.04-0.072] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
612	chr6_ssto_hap7	3558821	3558822	rs412657	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	6p21.32		rs412657-G	0.377896	3E-19		0.021442138	[0.017-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
612	chr6_ssto_hap7	3559053	3559054	rs411326	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	6p21.32		rs411326-C	0.728	4E-13				Affymetrix [10369434] (imputed)	N
612	chr6_ssto_hap7	3560391	3560392	rs9267951	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.32		rs9267951-C	0.729	9E-29				Affymetrix [10369434] (imputed)	N
612	chr6_ssto_hap7	3560391	3560392	rs9267951	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p21.32		rs9267951-C	0.729	5E-17				Affymetrix [10369434] (imputed)	N
612	chr6_ssto_hap7	3560430	3560431	rs9267952	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.32		rs9267952-G	0.573	6E-23				Affymetrix [10369434] (imputed)	N
612	chr6_ssto_hap7	3560430	3560431	rs9267952	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	XXbac-BPG154L12.4	rs9267952-A	NR	5E-14		0.0214967	[0.016-0.027] unit increase	Affymetrix [319769] (imputed)	N
612	chr6_ssto_hap7	3560430	3560431	rs9267952	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	XXbac-BPG154L12.4	rs9267952-A	NR	2E-13		0.0209537	[0.015-0.027] unit increase	Affymetrix [319769] (imputed)	N
612	chr6_ssto_hap7	3560430	3560431	rs9267952	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	XXbac-BPG154L12.4	rs9267952-A	NR	5E-12		0.0199663	[0.014-0.026] unit increase	Affymetrix [321169] (imputed)	N
612	chr6_ssto_hap7	3560442	3560442	rs35161164	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	XXbac-BPG154L12.4	rs35161164-CG	NR	1E-11		0.0195502	[0.014-0.025] unit decrease	Affymetrix [321016] (imputed)	N
612	chr6_ssto_hap7	3560442	3560442	rs35161164	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	XXbac-BPG154L12.4	rs35161164-CG	NR	5E-15		0.0245369	[0.018-0.031] unit decrease	Affymetrix [323123] (imputed)	N
612	chr6_ssto_hap7	3560594	3560595	rs10456404	33119750	Vergara C	2020-10-29	J Infect Dis	A multi-ancestry sex stratified genome-wide association study of spontaneous clearance of hepatitis C virus.	Hepatitis C (spontaneous viral clearance)	239 African ancestry male cases, 1,184 African ancestry male controls, 206 African ancestry female cases, 572 African ancestry female controls, 489 European ancestry male cases, 703 European ancestry male controls, 212 European ancestry female cases, 332 European ancestry female controls, 91 Hispanic male cases, 197 Hispanic male controls, 82 Hispanic female cases, 116 Hispanic female controls	NA	6p21.32	NR	rs10456404-C	0.13	2E-7	(female)	1.89	[NR]	Illumina [5730693] (imputed)	N
612	chr6_ssto_hap7	3560789	3560790	rs9267954	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	XXbac-BPG154L12.4	rs9267954-T	NR	2E-12		0.022421	[0.016-0.029] unit increase	Affymetrix [319769] (imputed)	N
612	chr6_ssto_hap7	3560789	3560790	rs9267954	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	XXbac-BPG154L12.4	rs9267954-T	NR	3E-12		0.0221835	[0.016-0.028] unit increase	Affymetrix [319769] (imputed)	N
612	chr6_ssto_hap7	3560789	3560790	rs9267954	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	XXbac-BPG154L12.4	rs9267954-T	NR	2E-11		0.0234019	[0.017-0.03] unit decrease	Affymetrix [323123] (imputed)	N
612	chr6_ssto_hap7	3560789	3560790	rs9267954	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	XXbac-BPG154L12.4	rs9267954-T	NR	1E-11		0.0218043	[0.015-0.028] unit increase	Affymetrix [321169] (imputed)	N
612	chr6_ssto_hap7	3560947	3560948	rs454748	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	XXbac-BPG154L12.4	rs454748-A	NR	3E-11		0.0188397	[0.013-0.024] unit decrease	Affymetrix [321016] (imputed)	N
612	chr6_ssto_hap7	3560947	3560948	rs454748	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	XXbac-BPG154L12.4	rs454748-A	NR	5E-15		0.0242475	[0.018-0.03] unit decrease	Affymetrix [323123] (imputed)	N
612	chr6_ssto_hap7	3564831	3564832	rs6936204	25096241	Keller MF	2014-08-05	Hum Mol Genet	Trans-ethnic meta-analysis of white blood cell phenotypes.	Neutrophil count	9,802 Japanese ancestry individuals, 16,550 European ancestry individuals, 7,391 African American individuals	NA	6p21.32	AK123889	rs6936204-C	0.585	6E-6	(EA)	0.02	[0.012-0.028] unit increase	Illumina [NR] (imputed)	N
612	chr6_ssto_hap7	3564831	3564832	rs6936204	25096241	Keller MF	2014-08-05	Hum Mol Genet	Trans-ethnic meta-analysis of white blood cell phenotypes.	Neutrophil count	9,802 Japanese ancestry individuals, 16,550 European ancestry individuals, 7,391 African American individuals	NA	6p21.32	AK123889	rs6936204-?	NR	3E-8		0.0196	[0.013-0.026] unit decrease	Illumina [NR] (imputed)	N
612	chr6_ssto_hap7	3564971	3564972	rs9267972	24925725	Chung SA	2014-06-12	J Am Soc Nephrol	Lupus nephritis susceptibility loci in women with systemic lupus erythematosus.	Lupus nephritis in systemic lupus erythematosus	588 European ancestry cases, 1,412 European ancestry controls	NA	6p21.32	C6orf10, NOTCh4	rs9267972-A	NR	2E-6	(Dominant)	1.85	[1.46,2.33]	Affymetrix, Illumina [1621689] (imputed)	N
612	chr6_ssto_hap7	3565152	3565153	rs3115574	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p21.32	NR	rs3115574-?	NR	2E-13		0.0942	[0.069-0.119] unit increase	Illumina [at least 560000] (imputed)	N
612	chr6_ssto_hap7	3565585	3565586	rs2894240	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	XXbac-BPG154L12.4	rs2894240-A	NR	5E-12		0.0197637	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
612	chr6_ssto_hap7	3565585	3565586	rs2894240	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	XXbac-BPG154L12.4	rs2894240-A	NR	2E-11		0.0191638	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
612	chr6_ssto_hap7	3565585	3565586	rs2894240	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	XXbac-BPG154L12.4	rs2894240-A	NR	4E-11		0.0191969	[0.014-0.025] unit increase	Affymetrix [321169] (imputed)	N
612	chr6_ssto_hap7	3566582	3566583	rs3115573	20595679	Feehally J	2010-07-01	J Am Soc Nephrol	HLA has strongest association with IgA nephropathy in genome-wide analysis.	Nephropathy	187 European ancestry child cases, 244 European ancestry cases, 4,980 European ancestry controls	NA	6p21.32	intergenic	rs3115573-?	NR	1E-9		1.62	[1.39-1.90]	Illumina [286200]	N
612	chr6_ssto_hap7	3566728	3566729	rs9296015	21779181	Gorlova O	2011-07-14	PLoS Genet	Identification of novel genetic markers associated with clinical phenotypes of systemic sclerosis through a genome-wide association strategy.	Systemic sclerosis	2,296 European ancestry cases, 5,172 European ancestry controls	3,175 European ancestry cases, 4,210 European ancestry controls	6p21.32	NOTCH4	rs9296015-?	0.81	1E-8	(ATA positive)	1.85	[1.49-2.27]	Illumina [NR] (imputed)	N
612	chr6_ssto_hap7	3566728	3566729	rs9296015	21505073	Terao C	2011-04-19	Hum Mol Genet	The human AIRE gene at chromosome 21q22 is a genetic determinant for the predisposition to rheumatoid arthritis in Japanese population.	Rheumatoid arthritis	1,247 Japanese ancestry cases, 1,486 Japanese ancestry controls	4,168 Japanese ancestry cases, 5,003 Japanese ancestry controls	6p21.32	HLA locus	rs9296015-?	NR	2E-38				Illumina [241523]	N
612	chr6_ssto_hap7	3569323	3569324	rs9267995	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	XXbac-BPG154L12.4	rs9267995-G	NR	2E-9		0.0171285	[0.012-0.023] unit decrease	Affymetrix [321114] (imputed)	N
612	chr6_ssto_hap7	3569323	3569324	rs9267995	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	XXbac-BPG154L12.4	rs9267995-G	NR	1E-21		0.027192	[0.022-0.033] unit decrease	Affymetrix [321169] (imputed)	N
612	chr6_ssto_hap7	3569323	3569324	rs9267995	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	6p21.32	NR	rs9267995-A	0.548939	3E-14		0.0512585	[0.038-0.065] unit decrease	Affymetrix [17914406] (imputed)	N
612	chr6_ssto_hap7	3569339	3569340	rs9296018	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.32		rs9296018-A	0.81	6E-10				Affymetrix [10369434] (imputed)	N
612	chr6_ssto_hap7	3570315	3570316	rs139197261	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6p21.32	XXbac-BPG154L12.4	rs139197261-G	0.015037	2E-10		0.05895812	[0.041-0.077] unit decrease	Affymetrix [93095623] (imputed)	N
612	chr6_ssto_hap7	3571057	3571058	rs3130320	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	XXbac-BPG154L12.4	rs3130320-T	NR	2E-25		0.030089	[0.024-0.036] unit decrease	Affymetrix [319769] (imputed)	N
612	chr6_ssto_hap7	3571057	3571058	rs3130320	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	XXbac-BPG154L12.4	rs3130320-T	NR	1E-15		0.0257005	[0.019-0.032] unit decrease	Affymetrix [323858] (imputed)	N
612	chr6_ssto_hap7	3571057	3571058	rs3130320	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	XXbac-BPG154L12.4	rs3130320-T	NR	5E-24		0.0292129	[0.024-0.035] unit decrease	Affymetrix [319769] (imputed)	N
612	chr6_ssto_hap7	3571057	3571058	rs3130320	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	XXbac-BPG154L12.4	rs3130320-T	NR	6E-14		0.0240661	[0.018-0.03] unit decrease	Affymetrix [127266] (imputed)	N
612	chr6_ssto_hap7	3571057	3571058	rs3130320	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	XXbac-BPG154L12.4	rs3130320-T	NR	7E-18		0.0248771	[0.019-0.031] unit increase	Affymetrix [321016] (imputed)	N
612	chr6_ssto_hap7	3571057	3571058	rs3130320	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	XXbac-BPG154L12.4	rs3130320-T	NR	3E-23		0.0312285	[0.025-0.037] unit increase	Affymetrix [323123] (imputed)	N
612	chr6_ssto_hap7	3571057	3571058	rs3130320	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.32	NOTCH4, C6orf10	rs3130320-C	0.6281	7E-8	(EA)	0.0224	[0.014-0.03] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
612	chr6_ssto_hap7	3571057	3571058	rs3130320	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.32	BTNL2	rs3130320-C	0.6281	6E-6	(EA, men)	0.0276	[0.016-0.04] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
612	chr6_ssto_hap7	3571057	3571058	rs3130320	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6p21.32	BTNL2	rs3130320-C	0.6281	6E-9	(EA)	0.0271	[0.018-0.036] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
612	chr6_ssto_hap7	3571057	3571058	rs3130320	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6p21.32	BTNL2	rs3130320-C	0.6267	9E-6	(EA, men)	0.0304	[0.017-0.044] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
612	chr6_ssto_hap7	3571057	3571058	rs3130320	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.32	NOTCH4, C6orf10	rs3130320-?	0.6281	5E-8	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
612	chr6_ssto_hap7	3571057	3571058	rs3130320	21408207	Chung SA	2011-03-03	PLoS Genet	Differential genetic associations for systemic lupus erythematosus based on anti-dsDNA autoantibody production.	Systemic lupus erythematosus	811 anti-dsDNA positive European ancestry cases, 906 anti-dsDNA negative European ancestry cases, 4,813 European ancestry controls	NA	6p21.32	NOTCH4, C6orf10	rs3130320-T	0.39	3E-6	(case-only)	1.39	[1.21-1.60]	Illumina [421318] (imputed)	N
612	chr6_ssto_hap7	3574154	3574155	rs112845108	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	XXbac-BPG154L12.4	rs112845108-T	NR	3E-8		0.0203101	[0.013-0.027] unit increase	Affymetrix [323123] (imputed)	N
612	chr6_ssto_hap7	3574283	3574284	rs9268026	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IGF2R	5,361 Icelandic ancestry individuals	NA	6p21.32		rs9268026-G	0.07788	3E-13		0.252335	[0.18-0.32] unit increase	Illumina [7506463] (imputed)	N
612	chr6_ssto_hap7	3577040	3577041	rs3132969	29534301	Nishida N	2018-03-13	Hepatology	Key HLA-DRB1-DQB1 haplotypes and role of the BTNL2 gene for response to a hepatitis B vaccine.	Response to hepatitis B vaccine	107 Japanese ancestry low responder individuals, 351 Japanese ancestry intermediate responder individuals, 735 Japanese ancestry high responder individuals	NA	6p21.32	OXA1L	rs3132969-?		2E-6		0.147	unit decrease	Affymetrix [427664]	N
612	chr6_ssto_hap7	3578156	3578157	rs3132972	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Perceived unattractiveness to mosquitoes	16,576 European ancestry individuals	NA	6p21.32	intergenic	rs3132972-G	NR	2E-6		0.114743	[0.067-0.162] unit decrease	Illumina [7433384] (imputed)	N
612	chr6_ssto_hap7	3578156	3578157	rs3132972	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.32	Intergenic	rs3132972-G	NR	8E-9		0.0190698	[0.013-0.026] unit decrease	Illumina [13520550] (imputed)	N
612	chr6_ssto_hap7	3580453	3580454	rs9268072	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Hepatitis B	1,425 European ancestry cases, 218,180 European ancestry controls	NA	6p21.32	NR	rs9268072-?	NR	1E-6		0.2518	[0.15-0.36] unit increase	Illumina [at least 560000] (imputed)	N
612	chr6_ssto_hap7	3592419	3592420	rs3130340	18445777	Styrkarsdottir U	2008-04-29	N Engl J Med	Multiple genetic loci for bone mineral density and fractures.	Bone mineral density (spine)	5,861 European ancestry individuals	7,925 European ancestry individuals	6p21.32	MHC, C6orf10	rs3130340-T	0.79	1E-7		0.1	[0.06-0.13] s.d. decrease	Illumina [301019]	N
612	chr6_ssto_hap7	3594837	3594838	rs145568234	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Ulcerative colitis	5,371 European ancestry cases, 412,561 European ancestry controls, 314 East Asian ancestry cases, 178,375 East Asian ancestry controls	NA	6p21.32		rs145568234-G	NR	5E-35		1.1793	[0.99-1.37] unit increase	Affymetrix, Illumina [25840981] (imputed)	N
612	chr6_ssto_hap7	3602052	3602052	rs9281714	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs9281714-T	0.974	2E-6		1.419	[1.28-1.56]	Illumina [11270530] (imputed)	N
612	chr6_ssto_hap7	3603305	3603306	rs184614409	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	6p21.32	NR	rs184614409-?	NR	8E-10		6.14	NR z score decrease	Illumina [at least 830937] (imputed)	N
612	chr6_ssto_hap7	3605359	3605360	rs926070	24292274	Speedy HE	2013-12-01	Nat Genet	A genome-wide association study identifies multiple susceptibility loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	1,739 European ancestry cases, 5,199 European ancestry controls	1,144 European ancestry cases, 3,151 European ancestry controls	6p21.32	HLA	rs926070-A	0.66	4E-8		1.27	[NR]	Illumina [450000] (imputed)	N
612	chr6_ssto_hap7	3609046	3609047	rs7775397	33909500	Moll M	2021-04-28	Am J Physiol Lung Cell Mol Physiol	A Systematic Analysis of Protein-altering Exonic Variants in Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease	up to 31,465 European ancestry cases, up to 203,688 European ancestry controls, up to 1,413 African ancestry cases, up to 6,080 African ancestry controls, up to 287 East Asian ancestry cases, up to 7,484 East Asian ancestry controls, up to 61 Hispanic cases, up to 613 Hispanic controls	NA	6p21.32	C6orf10	rs7775397-G	0.13	3E-13		1.12	[1.08 -1.15]	Illumina [at least 109036]	N
612	chr6_ssto_hap7	3609046	3609047	rs7775397	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p21.32	C6orf10	rs7775397-G		1E-35		0.042	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
612	chr6_ssto_hap7	3609046	3609047	rs7775397	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.32	c6orf10	rs7775397-G	0.1139	5E-71		3.83	[NR]	Illumina [242824]	N
612	chr6_ssto_hap7	3613677	3613678	rs114355928	32534018	Liu X	2020-06-10	Brain Behav Immun	Genetic factors underlying the bidirectional relationship between autoimmune and mental disorders - findings from a Danish population-based study.	Autoimmune traits	1,383 Danish ancestry cases, 62,656 Danish ancestry controls	NA	6p21.32	NR	rs114355928-T	0.018	2E-8		2.02	[1.62-2.53]	NR [7721839] (imputed)	N
612	chr6_ssto_hap7	3614106	3614107	rs9268155	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	6p21.32	NR	rs9268155-?	NR	1E-10		0.073	[0.051-0.095] unit decrease	Illumina [at least 560000] (imputed)	N
612	chr6_ssto_hap7	3619963	3619964	rs56036302	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Sjogren's syndrome	303 East Asian ancestry cases, 175,599 East Asian ancestry controls	NA	6p21.32		rs56036302-T	0.200590293	6E-10		0.6675887	[0.46-0.88] unit increase	Illumina [13429612] (imputed)	N
612	chr6_ssto_hap7	3619963	3619964	rs56036302	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Autoimmune hepatitis	85 East Asian ancestry cases, 166,529 East Asian ancestry controls	NA	6p21.32		rs56036302-T	0.200204228	7E-9		1.2431419	[0.82-1.66] unit increase	Illumina [13427809] (imputed)	N
612	chr6_ssto_hap7	3621572	3621573	rs6457536	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs6457536-G	NR	5E-11		0.0222803	[0.016-0.029] unit decrease	Affymetrix [321169] (imputed)	N
612	chr6_ssto_hap7	3624082	3624083	rs28366178	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	6p21.32	C6orf10	rs28366178-T	NR	9E-8		0.0353278	[0.022-0.048] unit increase	Illumina [13519193] (imputed)	N
612	chr6_ssto_hap7	3626440	3626441	rs9268199	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	C6orf10	rs9268199-G	NR	2E-8		0.0203912	[0.013-0.028] unit decrease	Affymetrix [319769] (imputed)	N
612	chr6_ssto_hap7	3626440	3626441	rs9268199	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs9268199-G	NR	3E-8		0.0201935	[0.013-0.027] unit decrease	Affymetrix [319769] (imputed)	N
612	chr6_ssto_hap7	3626440	3626441	rs9268199	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs9268199-G	NR	2E-8		0.0207992	[0.014-0.028] unit decrease	Affymetrix [321169] (imputed)	N
612	chr6_ssto_hap7	3626440	3626441	rs9268199	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.32	C6orf10	rs9268199-G	NR	2E-8	(women)	0.0327867	[0.021-0.044] unit increase	Illumina [13520550] (imputed)	N
612	chr6_ssto_hap7	3626597	3626598	rs3864302	34116867	Tanaka N	2021-06-02	J Allergy Clin Immunol	Eight novel susceptibility loci and putative causal variants in atopic dermatitis.	Atopic dermatitis	2,597 Japanese ancestry cases, 110,504 Japanese ancestry controls	NA	6p21.32		rs3864302-?	NR	6E-17		0.77	[0.72-0.82]	Illumina [9900441] (imputed)	N
612	chr6_ssto_hap7	3627145	3627146	rs9268202	29534301	Nishida N	2018-03-13	Hepatology	Key HLA-DRB1-DQB1 haplotypes and role of the BTNL2 gene for response to a hepatitis B vaccine.	Response to hepatitis B vaccine	107 Japanese ancestry low responder individuals, 351 Japanese ancestry intermediate responder individuals, 735 Japanese ancestry high responder individuals	NA	6p21.32	C6orf10	rs9268202-?		8E-8		0.168	unit decrease	Affymetrix [427664]	N
612	chr6_ssto_hap7	3627427	3627428	rs6934429	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	C6orf10	rs6934429-T	NR	9E-14		0.0248579	[0.018-0.031] unit decrease	Affymetrix [319769] (imputed)	N
612	chr6_ssto_hap7	3627427	3627428	rs6934429	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs6934429-T	NR	7E-13		0.0239747	[0.017-0.031] unit decrease	Affymetrix [319769] (imputed)	N
612	chr6_ssto_hap7	3628821	3628822	rs74209703	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.32	NR	rs74209703-?	NR	5E-10				Affymetrix [~ 8270000] (imputed)	N
612	chr6_ssto_hap7	3629217	3629218	rs28366179	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	6p21.32	C6orf10	rs28366179-A	0.1646	3E-21		0.04564547	[0.036-0.055] unit increase	Affymetrix [~ 2500000] (imputed)	N
612	chr6_ssto_hap7	3629873	3629874	rs2395141	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs2395141-?	NR	3E-10				Affymetrix [~ 8270000] (imputed)	N
612	chr6_ssto_hap7	3630638	3630639	rs6910071	20453842	Stahl EA	2010-05-09	Nat Genet	Genome-wide association study meta-analysis identifies seven new rheumatoid arthritis risk loci.	Rheumatoid arthritis	5,539 European ancestry cases, 20,169 European ancestry controls	6,768 European ancestry cases, 8,806 European ancestry controls	6p21.32	HLA-DRB1	rs6910071-G	0.22	1E-299		2.88	[2.73-3.03]	Affymetrix, Illumina [~ 2716259] (imputed)	N
612	chr6_ssto_hap7	3634469	3634470	rs2022542	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	6p21.32	C6orf10	rs2022542-G	0.0582	2E-52		0.1169749	[0.1-0.13] unit increase	Affymetrix [~ 2500000] (imputed)	N
612	chr6_ssto_hap7	3635112	3635113	rs2746115	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	6p21.32	NR	rs2746115-?	NR	8E-9				Affymetrix [~ 8270000] (imputed)	N
612	chr6_ssto_hap7	3641368	3641369	rs2395143	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	C6orf10, HNRNPA1P2	rs2395143-G	NR	2E-10		0.0215226	[0.015-0.028] unit decrease	Affymetrix [323123] (imputed)	N
612	chr6_ssto_hap7	3643237	3643240	rs759777208	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	C6orf10	rs759777208-CT	NR	3E-12		0.0275667	[0.02-0.035] unit decrease	Affymetrix [323858] (imputed)	N
612	chr6_ssto_hap7	3643237	3643240	rs759777208	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	C6orf10	rs759777208-CT	NR	2E-11		0.0265095	[0.019-0.034] unit decrease	Affymetrix [127266] (imputed)	N
612	chr6_ssto_hap7	3643237	3643240	rs759777208	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	C6orf10	rs759777208-CT	NR	4E-8		0.0212618	[0.014-0.029] unit increase	Affymetrix [323123] (imputed)	N
612	chr6_ssto_hap7	3643237	3643240	rs759777208	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p21.32	C6orf10	rs759777208-CT	NR	2E-8		0.0218536	[0.014-0.03] unit decrease	Affymetrix [323858] (imputed)	N
612	chr6_ssto_hap7	3643556	3643557	rs9268249	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	C6orf10	rs9268249-A	NR	5E-8		0.015398	[0.0099-0.0209] unit decrease	Affymetrix [321016] (imputed)	N
612	chr6_ssto_hap7	3643556	3643557	rs9268249	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	C6orf10	rs9268249-A	NR	7E-15		0.0239145	[0.018-0.03] unit decrease	Affymetrix [323123] (imputed)	N
612	chr6_ssto_hap7	3643686	3643687	rs6913664	34785669	Grosche S	2021-11-16	Nat Commun	Rare variant analysis in eczema identifies exonic variants in DUSP1, NOTCH4 and SLC9A4.	Eczema	20,016 European ancestry cases, 380,433 European ancestry controls	NA	6p21.32		rs6913664-T	0.4549	1E-15		0.91		Affymetrix, Illumina [9397031] (imputed)	N
612	chr6_ssto_hap7	3643690	3643691	rs9268251	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	C6orf10	rs9268251-A	NR	7E-11		0.0216525	[0.015-0.028] unit decrease	Affymetrix [319769] (imputed)	N
612	chr6_ssto_hap7	3643690	3643691	rs9268251	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs9268251-A	NR	3E-10		0.0208763	[0.014-0.027] unit decrease	Affymetrix [319769] (imputed)	N
612	chr6_ssto_hap7	3643690	3643691	rs9268251	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs9268251-A	NR	5E-10		0.0208582	[0.014-0.027] unit decrease	Affymetrix [321169] (imputed)	N
612	chr6_ssto_hap7	3647256	3647257	rs145396511	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs145396511-T	0.989	5E-9	(conditional)	1.574	[1.42-1.72]	Illumina [11270530] (imputed)	N
612	chr6_ssto_hap7	3648607	3648608	rs3129960	33106546	Johnson TA	2020-10-26	J Hum Genet	Association of an IGHV3-66 gene variant with Kawasaki disease.	Kawasaki disease	1,276 East Asian ancestry cases, 5,086 East Asian ancestry controls	2,152 East Asian ancestry cases, 2,751 East Asian ancestry controls	6p21.32	C6orf10, LOC101929163	rs3129960-G	NR	7E-13		0.73	[0.67-0.80]	Affymetrix, Illumina [6265045] (imputed)	N
612	chr6_ssto_hap7	3649224	3649225	rs115378818	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.32	C6orf10	rs115378818-T	0.0143760000000001	3E-49		0.16935384	[0.15-0.19] unit decrease	Affymetrix [93095623] (imputed)	N
612	chr6_ssto_hap7	3650179	3650180	rs1265757	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p21.32	C6orf10	rs1265757-A	0.343	1E-33				Illumina [118177]	N
612	chr6_ssto_hap7	3653034	3653035	rs78546106	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs78546106-?	NR	6E-11				Affymetrix [~ 8270000] (imputed)	N
612	chr6_ssto_hap7	3653454	3653455	rs926592	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p21.32	TSBP1	rs926592-C	0.658	6E-6		0.059	[0.034-0.084] unit increase	Affymetrix, Illumina [7374092] (imputed)	N
612	chr6_ssto_hap7	3653775	3653776	rs3129900	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (multivariate analysis)	477,968 European ancestry individuals	NA	6p21.32	C6orf10	rs3129900-G	0.171	7E-17		0.05	[0.038-0.062] unit decrease	NR [NR] (imputed)	N
612	chr6_ssto_hap7	3653775	3653776	rs3129900	20639878	Singer JB	2010-07-18	Nat Genet	A genome-wide study identifies HLA alleles associated with lumiracoxib-related liver injury.	Lumiracoxib-related liver injury	31 European ancestry cases, 3 Hispanic cases, 1 case, 176 European, Hispanic and other ancestry controls	79 European ancestry cases, 16 Hispanic ancestry cases, 1 case, 405 European, Hispanic and other ancestry controls	6p21.32	HLA-DRB1	rs3129900-?	0.105	7E-25		7.5	[5.0-11.3]	Affymetrix [682386]	N
612	chr6_ssto_hap7	3653886	3653887	rs9368716	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	C6orf10	rs9368716-A	NR	4E-17		0.0234977	[0.018-0.029] unit increase	Affymetrix [319769] (imputed)	N
612	chr6_ssto_hap7	3653886	3653887	rs9368716	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs9368716-A	NR	1E-16		0.0231755	[0.018-0.029] unit increase	Affymetrix [319769] (imputed)	N
612	chr6_ssto_hap7	3653886	3653887	rs9368716	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs9368716-A	NR	4E-9		0.0166452	[0.011-0.022] unit increase	Affymetrix [321114] (imputed)	N
612	chr6_ssto_hap7	3653886	3653887	rs9368716	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs9368716-A	NR	4E-17		0.023828	[0.018-0.029] unit increase	Affymetrix [321169] (imputed)	N
612	chr6_ssto_hap7	3656706	3656707	rs9469099	23042114	Hirota T	2012-10-07	Nat Genet	Genome-wide association study identifies eight new susceptibility loci for atopic dermatitis in the Japanese population.	Atopic dermatitis	1,472 Japanese ancestry cases, 7,971 Japanese ancestry controls	1,856 Japanese ancestry cases, 7,021 Japanese ancestry controls	6p21.32	C6orf10	rs9469099-G	0.909	5E-19		1.61	[1.44-1.80]	Illumina [606164]	N
612	chr6_ssto_hap7	3658662	3658663	rs2849018	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Diastolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	6p21.32	C6orf10	rs2849018-C	0.6531	2E-17		0.3443	[0.26-0.42] mmHg increase	Affymetrix [NR] (imputed)	N
612	chr6_ssto_hap7	3659258	3659259	rs3132954	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.32	NR	rs3132954-?	NR	3E-11				Affymetrix [~ 8270000] (imputed)	N
612	chr6_ssto_hap7	3661434	3661435	rs1265764	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	C6orf10	rs1265764-A	NR	2E-8		0.0409576	[0.027-0.055] unit decrease	Affymetrix [323858] (imputed)	N
612	chr6_ssto_hap7	3661434	3661435	rs1265764	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	C6orf10	rs1265764-A	NR	1E-8		0.0407492	[0.027-0.055] unit increase	Affymetrix [323123] (imputed)	N
612	chr6_ssto_hap7	3661434	3661435	rs1265764	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.32	C6orf10, XXbac-BPG154L12.5	rs1265764-A	0.0414	7E-7		0.1177	[0.071-0.164] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
612	chr6_ssto_hap7	3662702	3662703	rs78461719	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	6p21.32	NR	rs78461719-T	0.03388599999999997	1E-8		0.0314455	[0.022-0.041] unit increase	Affymetrix [16578495] (imputed)	N
612	chr6_ssto_hap7	3663176	3663177	rs910049	23321320	Urabe Y	2013-01-12	J Hepatol	A genome-wide association study of HCV-induced liver cirrhosis in the Japanese population identifies novel susceptibility loci at the MHC region.	Hepatitis C induced liver cirrhosis	682 Japanese ancestry cases, 1,045 Japanese ancestry controls	936 Japanese ancestry cases, 3,809 Japanese ancestry controls	6p21.32	C6orf10	rs910049-A	0.142	9E-11		1.46	[1.28-1.62]	Illumina [431618]	N
612	chr6_ssto_hap7	3667082	3667083	rs9268301	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6p21.32	C6orf10	rs9268301-A	0.438	2E-6	(Diet carbohydrate )	0.03	[NR] g/d increase	Illumina [899892]	N
612	chr6_ssto_hap7	3668914	3668915	rs368529276	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs368529276-A	0.961	4E-19		2.522	[2.32-2.72]	Illumina [11270530] (imputed)	N
612	chr6_ssto_hap7	3668995	3668996	rs2395148	18576341	Behrens EM	2008-06-24	Arthritis Rheum	Association of the TRAF1-C5 locus on chromosome 9 with juvenile idiopathic arthritis.	Arthritis (juvenile idiopathic)	67 European ancestry cases, 1,952 European ancestry controls, 63 cases	NA	6p21.32	HLA-DRB1	rs2395148-?	NR	2E-10		5.37	[3.02-9.56]	Illumina [524684]	N
613	chr6_ssto_hap7	3672812	3672813	rs13196329	29196614	Sud A	2017-12-01	Nat Commun	Genome-wide association study of classical Hodgkin lymphoma identifies key regulators of disease susceptibility.	Mixed cellularity Hodgkin lymphoma	828 European ancestry cases, 14,315 European ancestry controls	135 cases, 3,069 controls	6p21.32	C6orf10	rs13196329-?	NR	3E-14	(conditioned on rs1633096)	5.88	[3.70-9.09]	Illumina [> 10000000] (imputed)	N
613	chr6_ssto_hap7	3672812	3672813	rs13196329	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral fat	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	6p21.32	C6orf10	rs13196329-C	0.02	3E-6	(women)			Affymetrix, Illumina [2500000] (imputed)	N
613	chr6_ssto_hap7	3674098	3674099	rs7775581	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.32		rs7775581-C	0.429	4E-12				Affymetrix [10369434] (imputed)	N
613	chr6_ssto_hap7	3674360	3674361	rs9268310	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	Systemic lupus erythematosus	1,639 East Asian ancestry cases, 2,410 East Asian ancestry controls	NA			rs9268310-C	NR	7E-14		0.3626	[0.27-0.46] unit decrease	Illumina [NR] (imputed)	N
613	chr6_ssto_hap7	3676588	3676589	rs137931178	26959717	Nicoletti P	2016-03-09	Pharmacogenet Genomics	HLA-DRB1*16: 01-DQB1*05: 02 is a novel genetic risk factor for flupirtine-induced liver injury.	Drug-induced liver injury	620 European ancestry cases, 10,588 European ancestry controls	NA	6p21.32	MHC	rs137931178-?	NR	7E-6		79.0	[11.72-533.7]	Illumina [NR] (imputed)	N
613	chr6_ssto_hap7	3682657	3682658	rs2143462	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	C6orf10	rs2143462-A	NR	7E-12		0.0268233	[0.019-0.034] unit decrease	Affymetrix [323858] (imputed)	N
613	chr6_ssto_hap7	3682657	3682658	rs2143462	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	C6orf10	rs2143462-A	NR	6E-11		0.0256594	[0.018-0.033] unit decrease	Affymetrix [127266] (imputed)	N
613	chr6_ssto_hap7	3683643	3683644	rs3129934	22457343	Martinelli-Boneschi F	2012-03-28	Mult Scler	A genome-wide association study in progressive multiple sclerosis.	Multiple sclerosis	197 European ancestry cases, 234 European ancestry controls	379 European ancestry cases, 398 European ancestry controls	6p21.32	C6orf10	rs3129934-T	0.10	7E-16		2.34	[1.90-2.87]	Affymetrix [277866]	N
613	chr6_ssto_hap7	3683643	3683644	rs3129934	18941528	Comabella M	2008-10-22	PLoS One	Identification of a novel risk locus for multiple sclerosis at 13q31.3 by a pooled genome-wide scan of 500,000 single nucleotide polymorphisms.	Multiple sclerosis	242 European ancestry cases, 242 European ancestry controls	553 European ancestry cases, 1,033 European ancestry controls	6p21.32	HLA-DRB1	rs3129934-T	NR	9E-11		3.3	[2.3-4.9]	Affymetrix [428867]	N
613	chr6_ssto_hap7	3684000	3684001	rs113857285	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Celiac disease (PheCode 557.1)	1,036 European ancestry cases, 455,312 European ancestry controls	NA	6p21.32		rs113857285-A	0.002145	8E-10		4.04	[2.75-5.33] unit increase	NR [11842647] (imputed)	N
613	chr6_ssto_hap7	3684221	3684222	rs3129939	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.32	c6orf10	rs3129939-G	0.1772	2E-40		2.6	[NR]	Illumina [242824]	N
613	chr6_ssto_hap7	3684607	3684607	rs543236673	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	C6orf10	rs543236673-A	NR	2E-9		0.0175479	[0.012-0.023] unit decrease	Affymetrix [319769] (imputed)	N
613	chr6_ssto_hap7	3684607	3684607	rs543236673	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	C6orf10	rs543236673-A	NR	1E-12		0.0231806	[0.017-0.03] unit decrease	Affymetrix [323858] (imputed)	N
613	chr6_ssto_hap7	3684607	3684607	rs543236673	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs543236673-A	NR	3E-8		0.0162709	[0.011-0.022] unit decrease	Affymetrix [319769] (imputed)	N
613	chr6_ssto_hap7	3684607	3684607	rs543236673	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	C6orf10	rs543236673-A	NR	1E-10		0.0209276	[0.015-0.027] unit decrease	Affymetrix [127266] (imputed)	N
613	chr6_ssto_hap7	3684607	3684607	rs543236673	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	C6orf10	rs543236673-A	NR	2E-12		0.0205605	[0.015-0.026] unit increase	Affymetrix [321016] (imputed)	N
613	chr6_ssto_hap7	3684607	3684607	rs543236673	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	C6orf10	rs543236673-A	NR	1E-22		0.0312248	[0.025-0.037] unit increase	Affymetrix [323123] (imputed)	N
613	chr6_ssto_hap7	3684607	3684607	rs543236673	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs543236673-A	NR	4E-10		0.0185214	[0.013-0.024] unit decrease	Affymetrix [321169] (imputed)	N
613	chr6_ssto_hap7	3685088	3685089	rs2273017	21900946	Nakabayashi K	2011-09-08	J Hum Genet	Identification of independent risk loci for Graves' disease within the MHC in the Japanese population.	Graves' disease	1,119 Japanese ancestry cases, 2,718 Japanese ancestry controls	432 Japanese ancestry cases, 1,157 Japanese ancestry controls	6p21.32	MHC	rs2273017-A	0.51	2E-22		1.53	[1.40-1.66]	Perlegen [268068]	N
613	chr6_ssto_hap7	3685407	3685419	rs11275478	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atopic dermatitis	4,296 East Asian ancestry cases, 163,807 East Asian ancestry controls	NA	6p21.32		rs11275478-A	0.218070297	4E-17		0.25364324	[0.19-0.31] unit decrease	Illumina [13428180] (imputed)	N
613	chr6_ssto_hap7	3685750	3685751	rs3129942	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	6p21.32	C6orf10	rs3129942-G	0.742436	3E-18		0.013944	[0.011-0.017] unit decrease	Affymetrix [12370749]	N
613	chr6_ssto_hap7	3686165	3686166	rs3129943	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cirrhosis	2,551 East Asian ancestry cases, 176,175 East Asian ancestry controls	NA	6p21.32		rs3129943-G	0.365494247	2E-11		0.19759746	[0.14-0.26] unit increase	Illumina [13429980] (imputed)	N
613	chr6_ssto_hap7	3686165	3686166	rs3129943	21804548	Hirota T	2011-07-31	Nat Genet	Genome-wide association study identifies three new susceptibility loci for adult asthma in the Japanese population.	Asthma	1,532 Japanese ancestry cases, 3,304 Japanese ancestry controls	5,639 Japanese ancestry cases, 24,608 Japanese ancestry controls	6p21.32	C6orf10	rs3129943-T	0.62	3E-15		1.17	[1.12-1.21]	Illumina [458847]	N
613	chr6_ssto_hap7	3686455	3686456	rs2073044	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	C6orf10	rs2073044-T	NR	3E-16		0.0261214	[0.02-0.032] unit increase	Affymetrix [319769] (imputed)	N
613	chr6_ssto_hap7	3686455	3686456	rs2073044	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs2073044-T	NR	5E-16		0.0258492	[0.02-0.032] unit increase	Affymetrix [319769] (imputed)	N
613	chr6_ssto_hap7	3686455	3686456	rs2073044	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs2073044-T	NR	8E-14		0.0241214	[0.018-0.03] unit increase	Affymetrix [321169] (imputed)	N
613	chr6_ssto_hap7	3686545	3686546	rs2050190	34116867	Tanaka N	2021-06-02	J Allergy Clin Immunol	Eight novel susceptibility loci and putative causal variants in atopic dermatitis.	Atopic dermatitis	2,597 Japanese ancestry cases, 110,504 Japanese ancestry controls, 25,685 European ancestry cases, 76,768 European ancestry controls	NA	6p21.32		rs2050190-?	NR	4E-13		0.8	[0.75-0.85]	Illumina [5170515] (imputed)	N
613	chr6_ssto_hap7	3686545	3686546	rs2050190	22703881	Tang W	2012-06-14	Am J Hum Genet	Genetic associations for activated partial thromboplastin time and prothrombin time, their gene expression profiles, and risk of coronary artery disease.	Activated partial thromboplastin time	9,240 European ancestry individuals	2611 European ancestry individuals	6p21.32	C6orf10	rs2050190-A	NR	7E-7		0.2528	[0.17-0.34] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
613	chr6_ssto_hap7	3687253	3687254	rs9501618	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs9501618-C	0.016	9E-26	(Complement C4, C4A.C4B.4481.34.2)	1.03	[0.83-1.23] unit increase	Affymetrix [10572788] (imputed)	N
613	chr6_ssto_hap7	3687309	3687310	rs6913309	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Strep throat	52,487 European ancestry cases, 22,017 European ancestry controls	NA	6p21.32	NR	rs6913309-?	NR	5E-7		0.0308	[0.019-0.043] unit decrease	Illumina [at least 560000] (imputed)	N
613	chr6_ssto_hap7	3687309	3687310	rs6913309	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.32	Intergenic	rs6913309-T	NR	4E-6	(men)	0.0229829	[0.013-0.033] unit increase	Illumina [13520550] (imputed)	N
613	chr6_ssto_hap7	3687366	3687367	rs2050188	31375628	Tengvall K	2019-08-02	Proc Natl Acad Sci U S A	Molecular mimicry between Anoctamin 2 and Epstein-Barr virus nuclear antigen 1 associates with multiple sclerosis risk.	Anti-anoctamin 2 antibody levels	11,936 European ancestry individuals	NA	6p21.32	NR	rs2050188-G	NR	2E-14		0.07	[0.046-0.094] unit increase	Illumina [615763]	N
613	chr6_ssto_hap7	3687366	3687367	rs2050188	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	6p21.32	HLA-DRB5, C6orf10	rs2050188-T	0.673	9E-6	(EA)	0.0509	[0.028-0.073] unit increase	Affymetrix, Illumina [NR] (imputed)	N
613	chr6_ssto_hap7	3687366	3687367	rs2050188	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	6p21.32	HLA-DRB5, C6orf10	rs2050188-T	0.67	8E-9		1.06	[1.04-1.08]	Affymetrix, Illumina [NR] (imputed)	N
613	chr6_ssto_hap7	3687394	3687395	rs6913471	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	C6orf10	rs6913471-A	NR	1E-8		0.0182835	[0.012-0.025] unit decrease	Affymetrix [323123] (imputed)	N
613	chr6_ssto_hap7	3687575	3687576	rs2281276	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	C6orf10	rs2281276-G	NR	2E-11		0.0210706	[0.015-0.027] unit increase	Affymetrix [323858] (imputed)	N
613	chr6_ssto_hap7	3687575	3687576	rs2281276	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	C6orf10	rs2281276-G	NR	2E-10		0.0199503	[0.014-0.026] unit increase	Affymetrix [127266] (imputed)	N
613	chr6_ssto_hap7	3687575	3687576	rs2281276	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	C6orf10	rs2281276-G	NR	4E-15		0.0241531	[0.018-0.03] unit decrease	Affymetrix [323123] (imputed)	N
613	chr6_ssto_hap7	3687575	3687576	rs2281276	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	6p21.32	C6orf10	rs2281276-G	0.472805	6E-12		0.01778208	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
613	chr6_ssto_hap7	3688341	3688342	rs3129944	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs3129944-G	NR	4E-10		0.0217534	[0.015-0.029] unit decrease	Affymetrix [321169] (imputed)	N
613	chr6_ssto_hap7	3688677	3688678	rs9378202	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	C6orf10	rs9378202-C	NR	3E-9		0.0239944	[0.016-0.032] unit decrease	Affymetrix [323123] (imputed)	N
613	chr6_ssto_hap7	3688822	3688823	rs9268402	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	C6orf10	rs9268402-G	NR	2E-17		0.0239092	[0.018-0.029] unit decrease	Affymetrix [319769] (imputed)	N
613	chr6_ssto_hap7	3688822	3688823	rs9268402	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs9268402-G	NR	4E-17		0.0236172	[0.018-0.029] unit decrease	Affymetrix [319769] (imputed)	N
613	chr6_ssto_hap7	3688822	3688823	rs9268402	22751097	Lu X	2012-07-01	Nat Genet	Genome-wide association study in Han Chinese identifies four new susceptibility loci for coronary artery disease.	Coronary heart disease	1,515 Han Chinese ancestry cases, 5,019 Han Chinese ancestry controls	15,460 Han Chinese ancestry cases, 11,472 Han Chinese ancestry controls	6p21.32	BTNL2, C6orf10	rs9268402-G	0.59	3E-15		1.16	[1.12-1.20]	Affymetrix [~ 2200000] (imputed)	N
613	chr6_ssto_hap7	3688867	3688868	rs9391858	31566214	Kulminski AM	2019-09-30	J Gerontol A Biol Sci Med Sci	Quantitative and qualitative role of antagonistic heterogeneity in genetics of blood lipids.	Total cholesterol levels	29,902 European ancestry individuals	NA			rs9391858-G	0.14	3E-8		2.4	[1.56-3.24] unit increase	Affymetrix, Illumina [up to 2500000] (imputed)	N
613	chr6_ssto_hap7	3689586	3689587	rs73729220	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.32	NR	rs73729220-G	0.015	6E-7	(women)	0.670827	[0.41-0.93] unit increase	Affymetrix [up to 8900000] (imputed)	N
613	chr6_ssto_hap7	3689586	3689587	rs73729220	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.32	NR	rs73729220-G	0.015	4E-9		0.429629	[0.29-0.57] unit increase	Affymetrix [up to 8900000] (imputed)	N
613	chr6_ssto_hap7	3690004	3690005	rs3129945	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p21.32	NR	rs3129945-?	NR	3E-6		4.704	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
613	chr6_ssto_hap7	3690836	3690837	rs3117106	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	C6orf10	rs3117106-C	NR	4E-11		0.0274536	[0.019-0.036] unit increase	Affymetrix [323123] (imputed)	N
613	chr6_ssto_hap7	3692550	3692551	rs12528797	28107422	de Vries PS	2017-01-20	PLoS One	Comparison of HapMap and 1000 Genomes Reference Panels in a Large-Scale Genome-Wide Association Study.	Fibrinogen levels	91,953 European ancestry individuals (imputed to HapMap)		6p21.32	C6orf10, HCG23	rs12528797-?	NR	9E-9		0.0095	unit increase	Affymetrix, Illumina [2749429] (imputed)	N
613	chr6_ssto_hap7	3692747	3692748	rs7758128	21326295	Jin Y	2011-02-17	J Invest Dermatol	Genome-wide analysis identifies a quantitative trait locus in the MHC class II region associated with generalized vitiligo age of onset.	Vitiligo	1,339 European ancestry cases	677 European ancestry cases	6p21.32	BTNL2, C6orf10	rs7758128-A	0.06	8E-11				Illumina [520460]	N
613	chr6_ssto_hap7	3693059	3693060	rs2395153	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs2395153-G	NR	9E-12		0.0195615	[0.014-0.025] unit increase	Affymetrix [321114] (imputed)	N
613	chr6_ssto_hap7	3693059	3693060	rs2395153	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	C6orf10	rs2395153-G	NR	3E-19		0.0258131	[0.02-0.031] unit increase	Affymetrix [321169] (imputed)	N
613	chr6_ssto_hap7	3693153	3693154	rs2894254	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	6p21.32	C6orf10, BTNL2	rs2894254-T	NR	1E-13		0.238275	[0.18-0.3] unit increase	Illumina [at least 950000] (imputed)	N
613	chr6_ssto_hap7	3693153	3693154	rs2894254	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.32	NOTCH4, C6orf10	rs2894254-T	0.8879	1E-7	(EA)	0.0337	[0.021-0.046] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
613	chr6_ssto_hap7	3693153	3693154	rs2894254	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.32	BTNL2	rs2894254-T	0.8879	3E-9	(EA, men)	0.0557	[0.037-0.074] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
613	chr6_ssto_hap7	3693153	3693154	rs2894254	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6p21.32	BTNL2	rs2894254-T	0.888	6E-8	(men)	0.058	[0.037-0.079] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
613	chr6_ssto_hap7	3693153	3693154	rs2894254	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6p21.32	BTNL2	rs2894254-T	0.888	6E-8	(EA, men)	0.058	[0.037-0.079] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
613	chr6_ssto_hap7	3693153	3693154	rs2894254	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6p21.32	BTNL2	rs2894254-T	0.8879	6E-7	(EA)	0.0363	[0.022-0.051] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
613	chr6_ssto_hap7	3693153	3693154	rs2894254	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.32	NOTCH4, C6orf10	rs2894254-?	0.8879	5E-7	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
613	chr6_ssto_hap7	3693153	3693154	rs2894254	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.32	BTNL2	rs2894254-?	0.8879	9E-9	(men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
613	chr6_ssto_hap7	3693153	3693154	rs2894254	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.32	BTNL2	rs2894254-?	0.8879	9E-9	(EA, men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
613	chr6_ssto_hap7	3693951	3693952	rs9268435	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Serum alkaline phosphatase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	6p21.32	LOC101929163	rs9268435-?		1E-10		0.0358	[0.025-0.047] unit decrease	Illumina [31500000] (imputed)	N
613	chr6_ssto_hap7	3697021	3697022	rs3117103	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	6p21.32		rs3117103-A	0.859948	4E-9		0.0339726	[0.023-0.045] unit decrease	NR [11722792] (imputed)	N
613	chr6_ssto_hap7	3697918	3697919	rs28732201	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p21.32	NR	rs28732201-?	NR	6E-16		0.1787	[0.14-0.22] unit decrease	Illumina [at least 560000] (imputed)	N
613	chr6_ssto_hap7	3699030	3699031	rs6930777	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6p21.32		rs6930777-?	NR	5E-17		1.14262	[1.11-1.17]	NR [685523]	N
613	chr6_ssto_hap7	3700081	3700082	rs9268465	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HCG23	rs9268465-T	NR	6E-10		0.0196001	[0.013-0.026] unit decrease	Affymetrix [319769] (imputed)	N
613	chr6_ssto_hap7	3700081	3700082	rs9268465	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HCG23	rs9268465-T	NR	2E-8		0.0196784	[0.013-0.027] unit decrease	Affymetrix [323858] (imputed)	N
613	chr6_ssto_hap7	3700081	3700082	rs9268465	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HCG23	rs9268465-T	NR	1E-9		0.0191769	[0.013-0.025] unit decrease	Affymetrix [319769] (imputed)	N
613	chr6_ssto_hap7	3701376	3701377	rs9279623	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	6p21.32	HCG23	rs9279623-G	0.5081	7E-9		5.794	NR z score increase	Illumina [26237160] (imputed)	N
613	chr6_ssto_hap7	3701867	3701868	rs4424066	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	6p21.32	NR	rs4424066-A	0.578029598622173	7E-14		0.024764335	units decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
613	chr6_ssto_hap7	3704680	3704681	rs146003878	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs146003878-A	0.016	5E-11	(conditional)	1.678	[1.52-1.83]	Illumina [11270530] (imputed)	N
613	chr6_ssto_hap7	3705642	3705643	rs3129950	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.32	BTNL2	rs3129950-G	0.8899	4E-9	(men)	0.0593	[0.04-0.079] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
613	chr6_ssto_hap7	3705711	3705712	rs3117099	22688191	Bergen SE	2012-06-12	Mol Psychiatry	Genome-wide association study in a Swedish population yields support for greater CNV and MHC involvement in schizophrenia compared with bipolar disorder.	Bipolar disorder and schizophrenia	2,111 European ancestry schizophrenia cases, 836 European ancestry bipolar disorder cases, 2,535 European ancestry controls	NA	6p21.32	other genes, MHC	rs3117099-?	NR	3E-6		1.25	[NR]	Affymetrix [745006]	N
613	chr6_ssto_hap7	3705955	3705956	rs3117098	21804548	Hirota T	2011-07-31	Nat Genet	Genome-wide association study identifies three new susceptibility loci for adult asthma in the Japanese population.	Asthma	1,532 Japanese ancestry cases, 3,304 Japanese ancestry controls	5,639 Japanese ancestry cases, 24,608 Japanese ancestry controls	6p21.32	BTNL2	rs3117098-G	0.25	5E-12		1.16	[1.11-1.21]	Illumina [458847]	N
613	chr6_ssto_hap7	3705991	3705992	rs9348883	29903748	Debiec H	2018-06-14	J Am Soc Nephrol	Transethnic, Genome-Wide Analysis Reveals Immune-Related Risk Alleles and Phenotypic Correlates in Pediatric Steroid-Sensitive Nephrotic Syndrome.	Childhood steroid-sensitive nephrotic syndrome	244 European ancestry cases, 2,552 European ancestry controls, 56 African cases, 454 African controls, 85 Maghrebian cases, 261 Maghrebian controls	NA	6p21.32	LOC101929163, HCG23, BTNL2	rs9348883-T	0.94	9E-7	(conditioned on rs1063348 & rs28366266)	3.5	[2.13-5.83]	Illumina [at least 7529344] (imputed)	N
613	chr6_ssto_hap7	3706131	3706132	rs3117097	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling nervous	373,121 European ancestry individuals	NA	6p21.32	PSORS1C1	rs3117097-A	0.164022	4E-10		6.26	z score increase	NR [10847151] (imputed)	N
613	chr6_ssto_hap7	3706902	3706903	rs16870123	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	6p21.32	NR	rs16870123-?	NR	1E-10		6.408	NR z score decrease	Illumina [at least 830937] (imputed)	N
613	chr6_ssto_hap7	3708575	3708576	rs3817971	34871226	Kim SY	2021-11-01	Medicine (Baltimore)	Genome-wide association study identifies BTNL2 associated with atopic asthma in children.	Atopic asthma	243 East Asian ancestry child cases, 134 East Asian ancestry child controls	NA	6p21.32		rs3817971-A	NR	6E-7		3.509	[2.09-5.889]	Affymetrix [423461]	N
613	chr6_ssto_hap7	3708575	3708576	rs3817971	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p21.32	C6orf10, BTNL2	rs3817971-C	0.03	5E-6	(Turkish)	2.62	[1.71-4.01]	Illumina [up to 547389]	N
613	chr6_ssto_hap7	3708927	3708928	rs17202393	33592630	Herrera-Rivero M	2021-02-16	Thromb Haemost	Single- and Multimarker Genome-Wide Scans Evidence Novel Genetic Risk Modifiers for Venous Thromboembolism.	Venous thromboembolism	964 European ancestry cases, 899 European ancestry controls	NA	6p21.32	BTNL2, HCG23	rs17202393-A	NR	4E-38		0.03743	[0.02273-0.06163]	Illumina [484621]	N
613	chr6_ssto_hap7	3709453	3709454	rs114516436	27629369	Gao J	2016-09-15	Neuropsychopharmacology	Genome-Wide Association Study of Loneliness Demonstrates a Role for Common Variation.	Loneliness (multivariate analysis)	8,490 European ancestry individuals, 1,228 African American individuals, 867 Hispanic American individuals, 175 individuals	NA	6p21.32	BTNL2, HCG23, C6orf10	rs114516436-?	NR	2E-6	(EA)			Illumina [7205781] (imputed)	N
613	chr6_ssto_hap7	3710657	3710658	rs1980493	25936594	Tomer Y	2015-04-27	J Autoimmun	Genome wide identification of new genes and pathways in patients with both autoimmune thyroiditis and type 1 diabetes.	Type 1 diabetes and autoimmune thyroid diseases	346 European ancestry cases, 727 European ancestry controls	185 European ancestry cases, 340 European ancestry controls	6p21.32	BTNL2	rs1980493-G	NR	2E-20		2.5034		Illumina [514008]	N
613	chr6_ssto_hap7	3710657	3710658	rs1980493	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.32	BTNL2	rs1980493-G	0.1656	1E-48		2.87	[NR]	Illumina [242824]	N
613	chr6_ssto_hap7	3710657	3710658	rs1980493	19287509	Cui J	2009-03-14	Mol Med	Genome-wide association study of determinants of anti-cyclic citrullinated peptide antibody titer in adults with rheumatoid arthritis.	Anti-cyclic Citrullinated Peptide Antibody	531 European ancestry cases	849 European ancestry cases	6p21.32	HLA-DRA, BTNL2	rs1980493-?	0.13	5E-7				Affymetrix [97248]	N
613	chr6_ssto_hap7	3711258	3711259	rs2076530	22936702	Hofmann S	2012-08-30	Eur Respir J	Genome-wide association analysis reveals 12q13.3-q14.1 as new risk locus for sarcoidosis.	Sarcoidosis	637 European ancestry cases, 1,233 European ancestry controls	3,121 European ancestry cases, 4,284 European ancestry controls	6p21.32	BTNL2	rs2076530-?	NR	3E-11	(Chronic)			Affymetrix [677619]	N
613	chr6_ssto_hap7	3711286	3711287	rs9268480	19915573	Asano K	2009-11-15	Nat Genet	A genome-wide association study identifies three new susceptibility loci for ulcerative colitis in the Japanese population.	Ulcerative colitis	376 Japanese ancestry cases, 934 Japanese ancestry controls	376 Japanese ancestry cases, 1,097 Japanese ancestry controls	6p21.32	BTNL2	rs9268480-G	0.91	3E-6		1.82	[1.43-2.33]	Illumina [513923]	N
613	chr6_ssto_hap7	3711397	3711398	rs2076529	32766473	Yoshida K	2020-05-19	Hepatol Commun	Genome-Wide Association Study of Lean Nonalcoholic Fatty Liver Disease Suggests Human Leukocyte Antigen as a Novel Candidate Locus.	Lean nonalcoholic fatty liver disease	275 Japanese ancestry cases, 1,411 Japanese ancestry controls	NA	6p21.32	NR	rs2076529-?	NR	2E-7		1.66	[1.37-2.00]	Affymetrix [NR]	N
613	chr6_ssto_hap7	3711397	3711398	rs2076529	20935629	Heid IM	2010-10-10	Nat Genet	Meta-analysis identifies 13 new loci associated with waist-hip ratio and reveals sexual dimorphism in the genetic basis of fat distribution.	Waist-hip ratio	Up to 77,167 European ancestry individuals	Up to 113,636 European ancestry individuals	6p21.32	BTNL2	rs2076529-C	0.43	4E-7		0.02	[NR] unit increase	Affymetrix, Illumina, Perlegen [up to 2850269] (imputed)	N
613	chr6_ssto_hap7	3713861	3713862	rs4248166	29534301	Nishida N	2018-03-13	Hepatology	Key HLA-DRB1-DQB1 haplotypes and role of the BTNL2 gene for response to a hepatitis B vaccine.	Response to hepatitis B vaccine	107 Japanese ancestry low responder individuals, 351 Japanese ancestry intermediate responder individuals, 735 Japanese ancestry high responder individuals	NA	6p21.32	BTNL2	rs4248166-?		1E-12		0.124	unit decrease	Affymetrix [427664]	N
613	chr6_ssto_hap7	3713861	3713862	rs4248166	26819262	Zhou Y	2016-01-27	Mult Scler	Genetic loci for Epstein-Barr virus nuclear antigen-1 are associated with risk of multiple sclerosis.	Epstein Barr virus nuclear antigen 1 IgG levels	1,243 parents and up to 2,356 children from 992 families, 1,956 Mexican American individuals		6p21.32	NR	rs4248166-T		9E-11	(Mexican American)	0.16	unit decrease	Illumina [up to 2428201] (imputed)	N
613	chr6_ssto_hap7	3713861	3713862	rs4248166	26819262	Zhou Y	2016-01-27	Mult Scler	Genetic loci for Epstein-Barr virus nuclear antigen-1 are associated with risk of multiple sclerosis.	Epstein Barr virus nuclear antigen 1 IgG levels	1,243 parents and up to 2,356 children from 992 families, 1,956 Mexican American individuals		6p21.32	NR	rs4248166-T		1E-9		0.16	unit decrease	Illumina [up to 2428201] (imputed)	N
613	chr6_ssto_hap7	3714459	3714460	rs3117116	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein BGLAP	5,367 Icelandic ancestry individuals	NA	6p21.32		rs3117116-G	0.2246	5E-20		0.208543	[0.16-0.25] unit decrease	Illumina [7506463] (imputed)	N
613	chr6_ssto_hap7	3715529	3715530	rs3817963	27501781	Shiraishi K	2016-08-09	Nat Commun	Association of variations in HLA class II and other loci with susceptibility to EGFR-mutated lung adenocarcinoma.	EGFR mutation-positive lung adenocarcinoma	663 Japanese ancestry cases, 4,367 Japanese ancestry controls	2,510 Japanese ancestry cases, 10,791 Japanese ancestry controls	6p21.32	BTNL2	rs3817963-G	0.316	1E-16		1.29	[1.21-1.37]	Illumina [NR] (imputed)	N
613	chr6_ssto_hap7	3715529	3715530	rs3817963	23472185	Mero IL	2013-03-05	PLoS One	Oligoclonal band status in Scandinavian multiple sclerosis patients is associated with specific genetic risk alleles.	Multiple sclerosis (OCB status)	1,367 European ancestry OCB positive cases, 161 European ancestry OCB negative cases, 428 European ancestry controls	NA	6p21.32	BTNL2	rs3817963-?	NR	8E-6	(OCB positive vs. controls)	1.52	[1.27-1.79]	Illumina [495970]	N
613	chr6_ssto_hap7	3715529	3715530	rs3817963	23472185	Mero IL	2013-03-05	PLoS One	Oligoclonal band status in Scandinavian multiple sclerosis patients is associated with specific genetic risk alleles.	Multiple sclerosis (OCB status)	1,367 European ancestry OCB positive cases, 161 European ancestry OCB negative cases	3,029 European ancestry OCB positive cases, 374 European ancestry OCB negative cases	6p21.32	BTNL2	rs3817963-?	NR	6E-10		1.61	[1.38-1.87]	Illumina [495970]	N
613	chr6_ssto_hap7	3715529	3715530	rs3817963	23321320	Urabe Y	2013-01-12	J Hepatol	A genome-wide association study of HCV-induced liver cirrhosis in the Japanese population identifies novel susceptibility loci at the MHC region.	Hepatitis C induced liver cirrhosis	682 Japanese ancestry cases, 1,045 Japanese ancestry controls	936 Japanese ancestry cases, 3,809 Japanese ancestry controls	6p21.32	BTNL2	rs3817963-A	0.315	1E-8		1.3	[1.18-1.42]	Illumina [431618]	N
613	chr6_ssto_hap7	3715529	3715530	rs3817963	22797724	Shiraishi K	2012-07-15	Nat Genet	A genome-wide association study identifies two new susceptibility loci for lung adenocarcinoma in the Japanese population.	Lung adenocarcinoma	1,695 Japanese ancestry cases, 5,333 Japanese ancestry controls	4,334 Japanese ancestry cases, 8,202 Japanese ancestry controls	6p21.32	BTNL2	rs3817963-G	0.318	3E-10		1.18	[1.12-1.24]	Illumina [538166]	N
613	chr6_ssto_hap7	3716011	3716012	rs9268485	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	BTNL2	rs9268485-C	NR	1E-22		0.0275591	[0.022-0.033] unit decrease	Affymetrix [319769] (imputed)	N
613	chr6_ssto_hap7	3716011	3716012	rs9268485	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	BTNL2	rs9268485-C	NR	2E-12		0.0220667	[0.016-0.028] unit decrease	Affymetrix [323858] (imputed)	N
613	chr6_ssto_hap7	3716011	3716012	rs9268485	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	BTNL2	rs9268485-C	NR	4E-22		0.0271651	[0.022-0.033] unit decrease	Affymetrix [319769] (imputed)	N
613	chr6_ssto_hap7	3716011	3716012	rs9268485	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	BTNL2	rs9268485-C	NR	3E-11		0.0208559	[0.015-0.027] unit decrease	Affymetrix [127266] (imputed)	N
613	chr6_ssto_hap7	3716011	3716012	rs9268485	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	BTNL2	rs9268485-C	NR	3E-13		0.0204722	[0.015-0.026] unit increase	Affymetrix [321016] (imputed)	N
613	chr6_ssto_hap7	3716011	3716012	rs9268485	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	BTNL2	rs9268485-C	NR	2E-12		0.0216048	[0.016-0.028] unit increase	Affymetrix [323123] (imputed)	N
613	chr6_ssto_hap7	3716013	3716014	rs9268486	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs9268486-T	0.248	8E-27	(conditional)	1.384	[1.33-1.44]	Illumina [11270530] (imputed)	N
613	chr6_ssto_hap7	3716934	3716935	rs3763305	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	6p21.32		rs3763305-G	0.949	4E-9				Affymetrix [10369434] (imputed)	N
613	chr6_ssto_hap7	3716934	3716935	rs3763305	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.32	BTNL2	rs3763305-A	0.051434	4E-15		0.041934814	[0.031-0.052] unit decrease	Affymetrix [93095623] (imputed)	N
613	chr6_ssto_hap7	3718033	3718034	rs9461741	25569183	Vijai J	2015-01-08	Nat Commun	A genome-wide association study of marginal zone lymphoma shows association to the HLA region.	Marginal zone lymphoma	825 European ancestry cases, 6,221 European ancestry controls	456 European ancestry cases, 906 European ancestry controls	6p21.32	BTNL2	rs9461741-C	0.018	4E-15		2.66	[2.08-3.39]	Illumina [611856]	N
613	chr6_ssto_hap7	3718062	3718063	rs2076525	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	BTNL2	rs2076525-C	NR	9E-15		0.0237827	[0.018-0.03] unit increase	Affymetrix [321169] (imputed)	N
613	chr6_ssto_hap7	3718281	3718282	rs2076523	29903748	Debiec H	2018-06-14	J Am Soc Nephrol	Transethnic, Genome-Wide Analysis Reveals Immune-Related Risk Alleles and Phenotypic Correlates in Pediatric Steroid-Sensitive Nephrotic Syndrome.	Childhood steroid-sensitive nephrotic syndrome	56 African cases, 454 African controls	NA	6p21.32	BTNL2	rs2076523-?	NR	2E-9		4.8	[2.9-7.9]	Illumina [at least 7529344] (imputed)	N
613	chr6_ssto_hap7	3720631	3720632	rs10947260	28369058	Folkersen L	2017-04-03	PLoS Genet	Mapping of 79 loci for 83 plasma protein biomarkers in cardiovascular disease.	Blood protein levels in cardiovascular risk	3,394 European ancestry individuals	2,639 individuals	6p21.32	NOTCH4, AGER, ATF6B	rs10947260-C	0.1	6E-9		0.25	unit increase	Illumina [5270624] (imputed)	N
613	chr6_ssto_hap7	3720678	3720679	rs10947261	23850713	Yang SK	2013-07-14	Gut	Genome-wide association study of Crohn's disease in Koreans revealed three new susceptibility loci and common attributes of genetic susceptibility across ethnic populations.	Crohn's disease	532 Korean ancestry cases, 733 Korean ancestry controls	1,779 Korean ancestry cases, 1,709 Korean ancestry controls	6p21.32	HLA-DRA, HLA-DRB5, BTNL2, HLA-DRB1, HLA-DQA1	rs10947261-T	0.294	3E-12		1.36	[1.25-1.49]	Illumina [5664371] (imputed)	N
613	chr6_ssto_hap7	3720758	3720759	rs10947262	20305777	Nakajima M	2010-03-18	PLoS One	New sequence variants in HLA class II/III region associated with susceptibility to knee osteoarthritis identified by genome-wide association study.	Knee osteoarthritis	899 Japanese ancestry cases, 3,396 Japanese ancestry controls	167 Japanese ancestry cases, 347 Japanese ancestry controls, 813 European ancestry  cases, 1,071 European ancestry controls,	6p21.32	HLA-DQA2, HLA-DQB1, BTNL2	rs10947262-T	0.42	5E-9		1.31	[1.20-1.44]	Illumina [459393]	N
613	chr6_ssto_hap7	3721146	3721147	rs3806156	20410501	Jin Y	2010-04-21	N Engl J Med	Variant of TYR and autoimmunity susceptibility loci in generalized vitiligo.	Vitiligo	1,392 European ancestry cases, 2,629 European ancestry controls	647 European ancestry cases, 1,056 European ancestry controls, 183 European ancestry trios, 1,383 European ancestry individuals from 332 families	6p21.32	HLA-DRA, BTNL2, HLA-DQA1	rs3806156-T	0.37	7E-19		1.42	[1.32-1.54]	Illumina [520460]	N
613	chr6_ssto_hap7	3721249	3721250	rs3806157	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	BTNL2	rs3806157-G	NR	4E-8		0.0162252	[0.01-0.022] unit increase	Affymetrix [321114] (imputed)	N
613	chr6_ssto_hap7	3722042	3722043	rs2395158	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	6p21.32	BTNL2	rs2395158-A	0.830652	5E-40		0.0345684	[0.029-0.04] unit increase	Affymetrix [NR] (imputed)	N
613	chr6_ssto_hap7	3723418	3723419	rs3763309	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls	NA	6p21.32	HLA-DRA, BTNL2	rs3763309-A	0.21	1E-18		0.13	[0.091-0.169] unit increase	Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
613	chr6_ssto_hap7	3723418	3723419	rs3763309	24449572	Orozco G	2014-01-01	Arthritis Rheumatol	Novel rheumatoid arthritis susceptibility locus at 22q12 identified in an extended UK genome-wide association study.	Rheumatoid arthritis	3,034 European ancestry cases, 5,271 European ancestry controls	4,726 European ancestry cases, 2,625 European ancestry controls	6p21.32	HLA-DRB1	rs3763309-?		2E-124		2.3	[2.14-2.46]	Affymetrix, Illumina [1831729] (imputed)	N
613	chr6_ssto_hap7	3723621	3723622	rs3763311	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Cancer	56,634 White British ancestry cases, 218,196 White British ancestry controls	NA	6p21.32		rs3763311-?	NR	1E-5		0.967842	[0.95-0.98]	NR [688737]	N
613	chr6_ssto_hap7	3723793	3723794	rs3763312	26039976	Wei Z	2015-06-17	Sci Rep	Genome-Wide Association Studies of HIV-1 Host Control in Ethnically Diverse Chinese Populations.	HIV-1 viral setpoint	326 Han Chinese ancestry cases, 58 Dai Chinese ancestry cases, 40 Jingpo Chinese ancestry cases, 83 Uygur Chinese ancestry cases, 11 Hui Chinese ancestry cases, 20 East Asian cases	NA	6p21.32	BTNL2, HLA-DRA	rs3763312-A	0.15	6E-6	(Han)	0.4002	unit decrease	Illumina [up to 528294]	N
613	chr6_ssto_hap7	3723805	3723806	rs17208853	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Skin reflectance (Melanin index)	720 South Asian ancestry individuals		6p21.32	NR	rs17208853-C	NR	8E-6		0.649209	[0.36-0.93] unit decrease	Affymetrix, Illumina [at least 398118] (imputed)	N
613	chr6_ssto_hap7	3723916	3723917	rs3763313	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.32		rs3763313-C	0.17885300000000004	1E-26		1.0591807	[1.05-1.08]	Affymetrix, Illumina [9851866] (imputed)	N
613	chr6_ssto_hap7	3723916	3723917	rs3763313	20041166	Fellay J	2009-12-24	PLoS Genet	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	6p21.32	NOTCH4, BTNL2	rs3763313-?	NR	2E-6	(progression)			Illumina [NR]	N
613	chr6_ssto_hap7	3723962	3723963	rs9268500	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (drugs affecting bone structure and mineralization)	7,870 European ancestry cases, 207,798 European ancestry controls	NA	6p21.32	BTNL2	rs9268500-T	0.0508279	2E-8		0.20306516	[0.13-0.27] unit increase	Affymetrix [7288503] (imputed)	N
613	chr6_ssto_hap7	3724233	3724234	rs3763317	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	BTNL2	rs3763317-T	NR	1E-12		0.0200715	[0.015-0.026] unit increase	Affymetrix [319769] (imputed)	N
613	chr6_ssto_hap7	3724233	3724234	rs3763317	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	BTNL2	rs3763317-T	NR	1E-10		0.0202983	[0.014-0.026] unit increase	Affymetrix [323858] (imputed)	N
613	chr6_ssto_hap7	3724233	3724234	rs3763317	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	BTNL2	rs3763317-T	NR	6E-12		0.0194272	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
613	chr6_ssto_hap7	3724233	3724234	rs3763317	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	BTNL2	rs3763317-T	NR	2E-9		0.0188282	[0.013-0.025] unit increase	Affymetrix [127266] (imputed)	N
613	chr6_ssto_hap7	3724233	3724234	rs3763317	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	BTNL2	rs3763317-T	NR	2E-14		0.0235125	[0.017-0.03] unit decrease	Affymetrix [323123] (imputed)	N
613	chr6_ssto_hap7	3724233	3724234	rs3763317	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	BTNL2	rs3763317-T	NR	2E-13		0.0209669	[0.015-0.027] unit increase	Affymetrix [321169] (imputed)	N
613	chr6_ssto_hap7	3724233	3724234	rs3763317	23028341	Yang X	2012-09-13	PLoS Genet	Genome-wide association study for serum complement C3 and C4 levels in healthy Chinese subjects.	Complement C3 and C4 levels	1,999 Han Chinese ancestry male individuals	1,496 Han Chinese ancestry male individuals	6p21.32	HLA-DRB	rs3763317-C	0.37	9E-66	(Serum level of C4)	0.12	[0.10-0.14] g/L increase	Illumina [1940245] (imputed)	N
613	chr6_ssto_hap7	3724498	3724499	rs116835963	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs116835963-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
613	chr6_ssto_hap7	3724853	3724854	rs9268505	33713768	Akenroye AT	2021-03-10	J Allergy Clin Immunol	Genome-wide Association study of Asthma, Total IgE, and Lung function in a Cohort of Peruvian Children.	Serum IgE levels	727 Peruvian individuals	NA	6p21.32		rs9268505-?	NR	6E-8		0.211	unit increase	Illumina [NR] (imputed)	N
613	chr6_ssto_hap7	3726041	3726042	rs3129962	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	6p21.32	BTNL2	rs3129962-G	0.870649	8E-18		0.0243898	[0.019-0.03] unit increase	Affymetrix [NR] (imputed)	N
613	chr6_ssto_hap7	3726147	3726148	rs9268516	33328473	Ahluwalia TS	2020-12-16	Nat Commun	FUT2-ABO epistasis increases the risk of early childhood asthma and Streptococcus pneumoniae respiratory illnesses.	Childhood asthma with severe exacerbations	2,866 European ancestry cases,  65,415 European ancestry controls	NA	6p21.32	NR	rs9268516-A	NR	5E-10		0.1936	[0.13-0.25] unit increase	Illumina [up to 525976] (imputed)	N
613	chr6_ssto_hap7	3726147	3726148	rs9268516	23028483	Ramasamy A	2012-09-28	PLoS One	Genome-wide association studies of asthma in population-based cohorts confirm known and suggested loci and identify an additional association near HLA.	Asthma	1,716 European ancestry cases, 16,888 European ancestry controls	4,035 European ancestry cases, 11,251 European ancestry controls	6p21.32	HLA-DRA, BTNL2	rs9268516-T	0.24	1E-8		1.15	[1.10-1.21]	Affymetrix, Illumina [~ 2200000] (imputed)	N
613	chr6_ssto_hap7	3726394	3726395	rs9405098	23321320	Urabe Y	2013-01-12	J Hepatol	A genome-wide association study of HCV-induced liver cirrhosis in the Japanese population identifies novel susceptibility loci at the MHC region.	Hepatitis C induced liver cirrhosis	682 Japanese ancestry cases, 1,045 Japanese ancestry controls	936 Japanese ancestry cases, 3,809 Japanese ancestry controls	6p21.32	intergenic	rs9405098-A	0.253	1E-10		1.37	[1.24-1.51]	Illumina [431618]	N
613	chr6_ssto_hap7	3727565	3727566	rs9380294	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p21.32	BTNL2, HLA-DRA	rs9380294-C	0.01	7E-6	(EA)	4.76	[2.25-10.07]	Illumina [up to 547389]	N
613	chr6_ssto_hap7	3728393	3728394	rs7759742	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI in non-smokers	75,379 European ancestry women, 45,811 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	6p21.32	BTNL2	rs7759742-A	0.5117	1E-7		0.0144	[0.0091-0.0197] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
613	chr6_ssto_hap7	3728393	3728394	rs7759742	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (joint analysis main effects and smoking interaction)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	6p21.32	BTNL2	rs7759742-A	0.5117	1E-8				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
613	chr6_ssto_hap7	3728393	3728394	rs7759742	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	6p21.32	BTNL2	rs7759742-A	0.5117	3E-6	(men)	0.0248	[0.014-0.035] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
613	chr6_ssto_hap7	3728393	3728394	rs7759742	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	6p21.32	BTNL2	rs7759742-A	0.5117	1E-9		0.0217	[0.015-0.029] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
613	chr6_ssto_hap7	3728393	3728394	rs7759742	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex x age interaction (4df test)	up to 43,776 European ancestry men aged <50, up to 50,526 European ancestry women aged <50, up to 69,944 European ancestry men aged >50, up to 88,129 European ancestry women aged >50	NA	6p21.32	NR	rs7759742-A	0.509001212874385	2E-12				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
613	chr6_ssto_hap7	3728393	3728394	rs7759742	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p21.32	BTNL2	rs7759742-A	0.517	2E-11		0.0224	[0.016-0.029] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
613	chr6_ssto_hap7	3728393	3728394	rs7759742	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p21.32	BTNL2	rs7759742-A	0.5158	5E-8	(women)	0.0241	[0.015-0.033] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
613	chr6_ssto_hap7	3728393	3728394	rs7759742	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p21.32	BTNL2	rs7759742-A	0.5154	4E-6	(men)	0.0223	[0.013-0.032] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
613	chr6_ssto_hap7	3728393	3728394	rs7759742	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p21.32	BTNL2	rs7759742-A	0.511	4E-11	(EA)	0.0226	[0.016-0.029] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
613	chr6_ssto_hap7	3728393	3728394	rs7759742	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p21.32	BTNL2	rs7759742-A	0.5107	2E-7	(EA, women)	0.0237	[0.015-0.033] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
613	chr6_ssto_hap7	3728393	3728394	rs7759742	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	6p21.32	BTNL2	rs7759742-A	0.5106	5E-6	(EA, men)	0.0226	[0.013-0.032] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
613	chr6_ssto_hap7	3728930	3728930	rs143325653	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Scarlet fever	6,812 European ancestry cases, 113,837 European ancestry controls	NA	6p21.32	NR	rs143325653-?	NR	6E-7		0.0908	[0.055-0.126] unit increase	Illumina [at least 560000] (imputed)	N
613	chr6_ssto_hap7	3728930	3728930	rs143325653	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p21.32	NR	rs143325653-?	NR	3E-20		0.1121	[0.088-0.136] unit decrease	Illumina [at least 560000] (imputed)	N
613	chr6_ssto_hap7	3729712	3729713	rs4959027	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	Blood glucose levels	291,107 British ancestry individuals	NA	6p21.32	TBC1D22B	rs4959027-A	0.234405	5E-6		0.00399988	[0.0023-0.0057] unit decrease	Affymetrix [9463307] (imputed)	N
613	chr6_ssto_hap7	3729712	3729713	rs4959027	23449627	Cousminer DL	2013-02-27	Hum Mol Genet	Genome-wide association and longitudinal analyses reveal genetic loci linking pubertal height growth, pubertal timing and childhood adiposity.	Pubertal anthropometrics	up to 5,043 European ancestry males, up to 5,756 European ancestry females	NA	6p21.32	TAP2, HLA-DRA	rs4959027-G	0.82	9E-7	(Pubertal growth)	0.09	[0.057-0.123] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
613	chr6_ssto_hap7	3729800	3729801	rs4959028	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Effector Memory CD4+ T cell %CD4+ T cell	3,427 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs4959028-G	0.22877	3E-10		0.2111	[0.15-0.28] unit increase	Illumina [18349913] (imputed)	N
613	chr6_ssto_hap7	3729870	3729871	rs6930571	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.32	BTNL2	rs6930571-T	0.1659	2E-8		0.0561	[0.037-0.076] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
613	chr6_ssto_hap7	3730235	3730236	rs6912701	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.32	NR	rs6912701-T	0.014	6E-7	(women)	0.704901	[0.43-0.98] unit increase	Affymetrix [up to 8900000] (imputed)	N
613	chr6_ssto_hap7	3730235	3730236	rs6912701	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.32	NR	rs6912701-T	0.014	3E-9		0.454746	[0.31-0.6] unit increase	Affymetrix [up to 8900000] (imputed)	N
613	chr6_ssto_hap7	3731189	3731190	rs9268541	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6p21.32		rs9268541-C	0.054698	1E-10		0.03155108	[0.022-0.041] unit increase	Affymetrix [93095623] (imputed)	N
613	chr6_ssto_hap7	3731554	3731555	rs72847996	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs72847996-A	0.19	4E-8		4.04	[3.10-5.28]	Illumina [NR] (imputed)	N
613	chr6_ssto_hap7	3731595	3731596	rs80032720	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	IgA nephropathy	1,180 East Asian ancestry cases, 899 East Asian ancestry controls	NA			rs80032720-A	NR	9E-8		0.524129	[0.33-0.72] unit decrease	Illumina [NR] (imputed)	N
613	chr6_ssto_hap7	3732061	3732062	rs3135377	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	BTNL2	rs3135377-A	NR	2E-8		0.0200714	[0.013-0.027] unit increase	Affymetrix [323123] (imputed)	N
613	chr6_ssto_hap7	3734467	3734468	rs2395163	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	BTNL2	rs2395163-C	NR	7E-9		0.0197156	[0.013-0.026] unit increase	Affymetrix [321114] (imputed)	N
613	chr6_ssto_hap7	3734467	3734468	rs2395163	22451204	Pankratz N	2012-03-01	Ann Neurol	Meta-analysis of Parkinson's disease: identification of a novel locus, RIT2.	Parkinson's disease	4,238 European ancestry cases, 4,239 European ancestry controls	3,738 European ancestry cases, 2,111 European ancestry controls	6p21.32	LOC642072	rs2395163-?	NR	3E-11		1.24	[NR]	Illumina [2500000] (imputed)	N
613	chr6_ssto_hap7	3734933	3734934	rs2395166	33736632	Zeng Z	2021-03-18	BMC Med Genomics	Genome-wide association study identifies new loci associated with risk of HBV infection and disease progression.	Persistent hepatitis B virus infection	587 Chinese ancestry persistent cases, 275 Chinese ancestry clearance controls	NA	6p21.32	HLA-DRA	rs2395166-C	0.2182	1E-7		0.4534	NR	Affymetrix [607153]	N
613	chr6_ssto_hap7	3734933	3734934	rs2395166	28424481	Sugiura-Ogasawara M	2017-04-20	J Hum Genet	The first genome-wide association study identifying new susceptibility loci for obstetric antiphospholipid syndrome.	Obstetric antiphospholipid syndrome	115 Japanese ancestry female cases, 419 Japanese ancestry male and female controls	NA	6p21.32	HLA-DRA	rs2395166-T	0.71	3E-6		2.564103	[1.69-3.85]	Affymetrix [426344]	N
613	chr6_ssto_hap7	3734975	3734976	rs9461744	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4+ CD8dim T cell Absolute Count	3,652 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9461744-G	0.21272	7E-12		0.2434	[0.17-0.31] unit increase	Illumina [18427348] (imputed)	N
613	chr6_ssto_hap7	3734975	3734976	rs9461744	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4+ CD8dim T cell %lymphocyte	3,668 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9461744-G	0.21247	8E-19		0.3015	[0.24-0.37] unit increase	Illumina [18430788] (imputed)	N
613	chr6_ssto_hap7	3734975	3734976	rs9461744	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4+ CD8dim T cell %leukocyte	3,668 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9461744-G	0.21247	1E-16		0.2827	[0.22-0.35] unit increase	Illumina [18430788] (imputed)	N
613	chr6_ssto_hap7	3735204	3735205	rs2213581	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	6p21.32	BTNL2	rs2213581-T	0.2346	2E-11		0.002	[0.0014-0.0026] unit increase	Affymetrix [15275733] (imputed)	N
613	chr6_ssto_hap7	3735801	3735802	rs116869525	26151496	Chen PL	2015-07-07	Nat Commun	Genetic determinants of antithyroid drug-induced agranulocytosis by human leukocyte antigen genotyping and genome-wide association study.	Thionamide-induced agranulocytosis in Graves' disease	21 East Asian ancestry cases with agranulocytosis, 662 East Asian ancestry cases without agranulocytosis	21 East Asian ancestry cases with agranulocytosis, 546 East Asian ancestry cases without agranulocytosis	6p21.32	HLA-DRB1*08:03	rs116869525-T	0.083	1E-8	(trend)	4.16	[2.50-6.90] (allelic)	Affymetrix [522980]	N
613	chr6_ssto_hap7	3735913	3735914	rs3135365	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PRTN3	5,361 Icelandic ancestry individuals	NA	6p21.32		rs3135365-C	0.2736	5E-56		0.319492	[0.28-0.36] unit decrease	Illumina [7506463] (imputed)	N
613	chr6_ssto_hap7	3735913	3735914	rs3135365	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p21.32	BTNL2	rs3135365-C	0.022	9E-6		0.202	[0.11-0.29] unit increase	Affymetrix, Illumina [7374092] (imputed)	N
613	chr6_ssto_hap7	3735963	3735964	rs9268557	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.32		rs9268557-T	0.525	2E-25				Affymetrix [10369434] (imputed)	N
613	chr6_ssto_hap7	3735963	3735964	rs9268557	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.32		rs9268557-T	0.525	3E-16				Affymetrix [10369434] (imputed)	N
613	chr6_ssto_hap7	3735963	3735964	rs9268557	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.32		rs9268557-T	0.525	1E-45				Affymetrix [10369434] (imputed)	N
613	chr6_ssto_hap7	3735963	3735964	rs9268557	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	BTNL2	rs9268557-C	NR	1E-12		0.0202435	[0.015-0.026] unit increase	Affymetrix [321169] (imputed)	N
613	chr6_ssto_hap7	3735963	3735964	rs9268557	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p21.32	NR	rs9268557-?	NR	4E-15		0.0947	[0.071-0.118] unit increase	Illumina [at least 560000] (imputed)	N
613	chr6_ssto_hap7	3735963	3735964	rs9268557	26272072	Jiang X	2015-08-13	Rheumatology (Oxford)	An Immunochip-based interaction study of contrasting interaction effects with smoking in ACPA-positive versus ACPA-negative rheumatoid arthritis.	ACPA-positive rheumatoid arthritis (smoking interaction)	340 European ancestry never-smoker cases, 493 European ancestry ever-smoker cases, 746 European ancestry never-smoker controls, 994 European ancestry ever-smoker controls	187 European ancestry never-smoker cases, 421 European ancestry ever-smoker cases, 461 European ancestry never-smoker controls, 447 European ancestry ever-smoker controls	6p21.32	NR	rs9268557-?	NR	3E-10	(adjusted for HLA shared epitope)	2.5	[1.92-3.7]	Illumina [133648] (imputed)	N
613	chr6_ssto_hap7	3736049	3736050	rs9268559	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	6p21.32		rs9268559-?	NR	5E-8				Affymetrix [NR] (imputed)	N
613	chr6_ssto_hap7	3736049	3736050	rs9268559	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	6p21.32		rs9268559-G	0.023054	2E-12		0.054041814	[0.039-0.069] unit decrease	Affymetrix [93095623] (imputed)	N
613	chr6_ssto_hap7	3736049	3736050	rs9268559	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.32	NR	rs9268559-G	0.013	4E-7	(women)	0.762177	[0.47-1.05] unit increase	Affymetrix [up to 8900000] (imputed)	N
613	chr6_ssto_hap7	3736049	3736050	rs9268559	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.32	NR	rs9268559-G	0.013	2E-8		0.442409	[0.29-0.6] unit increase	Affymetrix [up to 8900000] (imputed)	N
613	chr6_ssto_hap7	3736170	3736171	rs9268560	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	BTNL2	rs9268560-C	NR	5E-17		0.023445	[0.018-0.029] unit decrease	Affymetrix [319769] (imputed)	N
613	chr6_ssto_hap7	3736170	3736171	rs9268560	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	BTNL2	rs9268560-C	NR	1E-10		0.0201058	[0.014-0.026] unit decrease	Affymetrix [323858] (imputed)	N
613	chr6_ssto_hap7	3736170	3736171	rs9268560	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	BTNL2	rs9268560-C	NR	1E-15		0.0224411	[0.017-0.028] unit decrease	Affymetrix [319769] (imputed)	N
613	chr6_ssto_hap7	3736170	3736171	rs9268560	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	BTNL2	rs9268560-C	NR	4E-9		0.0183123	[0.012-0.024] unit decrease	Affymetrix [127266] (imputed)	N
613	chr6_ssto_hap7	3736170	3736171	rs9268560	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	BTNL2	rs9268560-C	NR	3E-15		0.0220981	[0.017-0.028] unit increase	Affymetrix [321016] (imputed)	N
613	chr6_ssto_hap7	3736170	3736171	rs9268560	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	BTNL2	rs9268560-C	NR	1E-17		0.0260901	[0.02-0.032] unit increase	Affymetrix [323123] (imputed)	N
613	chr6_ssto_hap7	3736201	3736202	rs28732209	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	334,468 European ancestry, NR ancestry individuals	NA	6p21.32		rs28732209-?	NR	5E-8				Affymetrix [NR] (imputed)	N
613	chr6_ssto_hap7	3736203	3736204	rs3135364	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C4A;C4B	5,353 Icelandic ancestry individuals	NA	6p21.32		rs3135364-G	0.2232	3E-39		0.289407	[0.25-0.33] unit decrease	Illumina [7506463] (imputed)	N
613	chr6_ssto_hap7	3736203	3736204	rs3135364	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	6p21.32	NR	rs3135364-G	0.221478	4E-13		0.0590942	[0.043-0.075] unit increase	Affymetrix [17914406] (imputed)	N
613	chr6_ssto_hap7	3736306	3736307	rs3135363	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	BTNL2	rs3135363-G	NR	2E-11		0.0237256	[0.017-0.031] unit decrease	Affymetrix [323858] (imputed)	N
613	chr6_ssto_hap7	3736306	3736307	rs3135363	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	BTNL2	rs3135363-G	NR	1E-10		0.022911	[0.016-0.03] unit decrease	Affymetrix [127266] (imputed)	N
613	chr6_ssto_hap7	3736306	3736307	rs3135363	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on CD33- HLA DR+	1,635 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs3135363-G	0.17311	2E-13		0.3649	[0.27-0.46] unit increase	Illumina [16999305] (imputed)	N
613	chr6_ssto_hap7	3736306	3736307	rs3135363	24282030	Pan L	2013-11-28	Hum Mol Genet	A genome-wide association study identifies polymorphisms in the HLA-DR region associated with non-response to hepatitis B vaccination in Chinese Han populations.	Hepatitis B vaccine response	108 Han Chinese ancestry high-responder cases, 77 Han Chinese ancestry non-responder controls	1,336 Han Chinese ancestry high-responder cases, 420 Han Chinese ancestry non-responder controls	6p21.32	HLA-DR	rs3135363-?	NR	8E-7		1.51	[1.28-1.78]	Illumina [588026]	N
613	chr6_ssto_hap7	3736306	3736307	rs3135363	23321320	Urabe Y	2013-01-12	J Hepatol	A genome-wide association study of HCV-induced liver cirrhosis in the Japanese population identifies novel susceptibility loci at the MHC region.	Hepatitis C induced liver cirrhosis	682 Japanese ancestry cases, 1,045 Japanese ancestry controls	936 Japanese ancestry cases, 3,809 Japanese ancestry controls	6p21.32	intergenic	rs3135363-C	0.702	1E-10		1.37	[1.24-1.51]	Illumina [431618]	N
613	chr6_ssto_hap7	3736306	3736307	rs3135363	21764829	Png E	2011-07-15	Hum Mol Genet	A genome-wide association study of hepatitis B vaccine response in an Indonesian population reveals multiple independent risk variants in the HLA region.	Hepatitis B vaccine response	1,683 Indonesian ancestry individuals	1,931 Indonesian ancestry individuals	6p21.32	HLA-DR	rs3135363-?	NR	7E-22		1.53	[1.35-1.74]	Illumina [455508]	N
613	chr6_ssto_hap7	3736990	3736991	rs2894255	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	BTNL2	rs2894255-T	NR	2E-17		0.0362414	[0.028-0.045] unit decrease	Affymetrix [323858] (imputed)	N
613	chr6_ssto_hap7	3736990	3736991	rs2894255	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	BTNL2	rs2894255-T	NR	7E-16		0.0344273	[0.026-0.043] unit decrease	Affymetrix [127266] (imputed)	N
613	chr6_ssto_hap7	3736990	3736991	rs2894255	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p21.32	BTNL2	rs2894255-T	NR	2E-11		0.0284523	[0.02-0.037] unit decrease	Affymetrix [323858] (imputed)	N
613	chr6_ssto_hap7	3737247	3737248	rs3135359	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p21.32	HLA-DRADQA1	rs3135359-C	0.71	9E-21		1.21	[1.18-1.24]	Illumina [at least 560000] (imputed)	N
613	chr6_ssto_hap7	3739403	3739404	rs6935999	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.32	NR	rs6935999-A	0.011	8E-8	(women)	0.839311	[0.54-1.14] unit increase	Affymetrix [up to 8900000] (imputed)	N
613	chr6_ssto_hap7	3739403	3739404	rs6935999	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.32	NR	rs6935999-A	0.011	3E-11		0.563282	[0.4-0.73] unit increase	Affymetrix [up to 8900000] (imputed)	N
613	chr6_ssto_hap7	3739523	3739524	rs3135353	33941608	Khan A	2021-05-03	J Am Soc Nephrol	Medical Records-Based Genetic Studies of the Complement System.	Complement C4 levels	3,247 European ancestry individuals, 600 African ancestry individuals, 151 East Asian ancestry individuals	NA	6p21.32	C4	rs3135353-C	0.15	2E-33	(EA)	0.4	[0.34-0.45] unit increase	NR [NR] (imputed)	N
613	chr6_ssto_hap7	3739523	3739524	rs3135353	33941608	Khan A	2021-05-03	J Am Soc Nephrol	Medical Records-Based Genetic Studies of the Complement System.	Complement C4 levels	3,247 European ancestry individuals, 600 African ancestry individuals, 151 East Asian ancestry individuals	NA	6p21.32	C4	rs3135353-C	0.12	5E-35		0.4	[0.34-0.45] unit increase	NR [NR] (imputed)	N
613	chr6_ssto_hap7	3739627	3739628	rs3135350	24962563	Rubicz R	2014-07-01	Genet Epidemiol	Genome-wide genetic and transcriptomic investigation of variation in antibody response to dietary antigens.	Food antigen IgG levels	1,367 Mexican Americans from 63 families	NA	6p21.32	NOTCH4, HLA-DRA, BTNL2	rs3135350-G	0.046	9E-8	(Gliadin)	0.51	[NR] unit increase	Illumina [944565] (imputed)	N
613	chr6_ssto_hap7	3742289	3742290	rs9268576	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p21.32	HLA-DRA	rs9268576-C	0.359	2E-8		0.111	[0.072-0.15] unit decrease	Affymetrix, Illumina [7374092] (imputed)	N
613	chr6_ssto_hap7	3742289	3742290	rs9268576	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on CD33+ HLA DR+ CD14dim	1,578 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9268576-C	0.46709	3E-10		0.262	[0.18-0.34] unit decrease	Illumina [16958370] (imputed)	N
613	chr6_ssto_hap7	3742289	3742290	rs9268576	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on CD33+ HLA DR+ CD14-	1,579 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9268576-C	0.46711	3E-20		0.3825	[0.3-0.46] unit decrease	Illumina [16961968] (imputed)	N
613	chr6_ssto_hap7	3742304	3742305	rs2105903	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in diabetes	70,762 European ancestry individuals, 20,967 African American individuals	NA	6p21.32	HLA-DRA	rs2105903-A	0.838	4E-12		0.821	[0.59-1.05] unit increase	Affymetrix [NR] (imputed)	N
613	chr6_ssto_hap7	3742374	3742375	rs3129843	26362759	Rothwell S	2015-09-11	Ann Rheum Dis	Dense genotyping of immune-related loci in idiopathic inflammatory myopathies confirms HLA alleles as the strongest genetic risk factor and suggests different genetic background for major clinical subgroups.	Idiopathic inflammatory myopathy	2,556 European ancestry cases, 15,651 European ancestry controls		6p21.32	HLA	rs3129843-G	0.11	9E-133		2.74	[2.53-2.97]	Illumina [90536]	N
613	chr6_ssto_hap7	3742374	3742375	rs3129843	26362759	Rothwell S	2015-09-11	Ann Rheum Dis	Dense genotyping of immune-related loci in idiopathic inflammatory myopathies confirms HLA alleles as the strongest genetic risk factor and suggests different genetic background for major clinical subgroups.	Dermatomyositis or juvenile dermatomyositis	879 European dermatomyositis cases, 15,651 European juvenile dermatomyositis ancestry controls		6p21.32	HLA	rs3129843-G		2E-48		2.18	[1.97-2.42]	Illumina [90536]	N
613	chr6_ssto_hap7	3742793	3742794	rs78566116	29782485	Rueger S	2018-05-21	PLoS Genet	Evaluation and application of summary statistic imputation to discover new height-associated loci.	Height	253,288 European ancestry individuals	336,474 European ancestry individuals	6p21.32	intergenic	rs78566116-T	0.0766992859032002	4E-12		0.011949114	unit decrease	NR [9276018] (imputed)	N
613	chr6_ssto_hap7	3743948	3743949	rs3129849	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PRTN3	5,367 Icelandic ancestry individuals	NA	6p21.32		rs3129849-A	0.2684	2E-16		0.176044	[0.13-0.22] unit increase	Illumina [7506463] (imputed)	N
613	chr6_ssto_hap7	3744447	3744448	rs3129852	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DRA	rs3129852-G	NR	3E-8		0.019398	[0.013-0.026] unit decrease	Affymetrix [319769] (imputed)	N
613	chr6_ssto_hap7	3744526	3744527	rs17202717	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs17202717-T	0.2	9E-9		4.33	[3.31-5.67]	Illumina [NR] (imputed)	N
613	chr6_ssto_hap7	3745311	3745312	rs3129853	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Prostate cancer	7,438 White British ancestry cases, 118,206 White British ancestry controls	NA	6p21.32		rs3129853-?	NR	2E-6		0.913903	[0.88-0.95]	NR [680312]	N
613	chr6_ssto_hap7	3745847	3745848	rs4321864	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DRA	rs4321864-A	NR	1E-10		0.019351	[0.013-0.025] unit increase	Affymetrix [319769] (imputed)	N
613	chr6_ssto_hap7	3745847	3745848	rs4321864	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DRA	rs4321864-A	NR	5E-10		0.0188026	[0.013-0.025] unit increase	Affymetrix [319769] (imputed)	N
613	chr6_ssto_hap7	3745847	3745848	rs4321864	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DRA	rs4321864-A	NR	2E-11		0.0204042	[0.014-0.026] unit increase	Affymetrix [321169] (imputed)	N
613	chr6_ssto_hap7	3745847	3745848	rs4321864	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on Hematopoietic Stem Cell	1,634 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs4321864-A	0.29062	4E-9		0.2523	[0.17-0.34] unit increase	Illumina [16999215] (imputed)	N
613	chr6_ssto_hap7	3745847	3745848	rs4321864	26450422	DeLorenze GN	2015-10-08	J Infect Dis	Polymorphisms in HLA Class II Genes Are Associated With Susceptibility to Staphylococcus aureus Infection in a White Population.	Staphylococcus aureus infection	4,701 European ancestry cases, 45,344 European ancestry controls	NA	6p21.32	HLA-DRA	rs4321864-A	NR	9E-8		1.13	[NR]	Affymetrix [at least 584535] (imputed)	N
613	chr6_ssto_hap7	3747598	3747599	rs3129859	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	6p21.32	NR	rs3129859-G	0.67	1E-12		1.06	[1.04-1.08]	Illumina [20370935] (imputed)	N
613	chr6_ssto_hap7	3747598	3747599	rs3129859	28130311	Tan W	2017-01-27	Gut	Genome-wide association study identifies HLA-DR variants conferring risk of HBV-related acute-on-chronic liver failure.	Acute-on-chronic liver failure in hepatitis B	389 Chinese ancestry cases, 391 Chinese ancestry controls	901 Chinese ancestry cases,  1,686 Chinese ancestry controls	6p21.32	HLA-DQB1, HLA-DRA	rs3129859-C	0.15	7E-19		1.83	[1.60-2.09]	Affymetrix [654960]	N
613	chr6_ssto_hap7	3747695	3747696	rs17496307	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs17496307-T	0.2	9E-9		4.33	[3.31-5.67]	Illumina [NR] (imputed)	N
613	chr6_ssto_hap7	3747738	3747739	rs3129860	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CFTR	5,361 Icelandic ancestry individuals	NA	6p21.32		rs3129860-A	0.2255	1E-13		0.165583	[0.12-0.21] unit increase	Illumina [7506463] (imputed)	N
613	chr6_ssto_hap7	3747738	3747739	rs3129860	23321320	Urabe Y	2013-01-12	J Hepatol	A genome-wide association study of HCV-induced liver cirrhosis in the Japanese population identifies novel susceptibility loci at the MHC region.	Hepatitis C induced liver cirrhosis	682 Japanese ancestry cases, 1,045 Japanese ancestry controls	936 Japanese ancestry cases, 3,809 Japanese ancestry controls	6p21.32	intergenic	rs3129860-A	0.231	1E-9		1.36	[1.22-1.49]	Illumina [431618]	N
613	chr6_ssto_hap7	3747876	3747877	rs3135338	20159113	Jakkula E	2010-02-12	Am J Hum Genet	Genome-wide association study in a high-risk isolate for multiple sclerosis reveals associated variants in STAT3 gene.	Multiple sclerosis	68 Finland founder cases, 136 Finland founder controls	83 Finland founder cases, 365 Finland founder controls 3,285 European ancestry cases, 6,379 European ancestry controls, 1,202 cases, 3,399 controls	6p21.32	HLA	rs3135338-A	0.13	2E-25		3.43	[NR]	Illumina [297343]	N
613	chr6_ssto_hap7	3747922	3747923	rs9268610	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on CD33dim HLA DR+ CD11b-	1,635 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9268610-C	0.23837	2E-14		0.3692	[0.28-0.46] unit decrease	Illumina [16999305] (imputed)	N
613	chr6_ssto_hap7	3749549	3749550	rs9268615	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DRA	rs9268615-A	NR	5E-9		0.0185721	[0.012-0.025] unit decrease	Affymetrix [323123] (imputed)	N
613	chr6_ssto_hap7	3749779	3749780	rs28732213	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs28732213-A	0.041	4E-80	(Ubiquitin carboxyl-terminal hydrolase 25, USP25.9215.117.3)	1.13	[1.01-1.25] unit increase	Affymetrix [10572788] (imputed)	N
613	chr6_ssto_hap7	3751054	3751055	rs3129868	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	6p21.32	NR	rs3129868-?	NR	6E-10		0.077	[0.052-0.101] unit increase	Illumina [at least 560000] (imputed)	N
613	chr6_ssto_hap7	3752541	3752542	rs9268628	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on HLA DR+ Natural Killer	2,971 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9268628-C	0.60641	2E-23		0.2999	[0.24-0.36] unit decrease	Illumina [17967059] (imputed)	N
613	chr6_ssto_hap7	3753008	3753009	rs3129871	23472185	Mero IL	2013-03-05	PLoS One	Oligoclonal band status in Scandinavian multiple sclerosis patients is associated with specific genetic risk alleles.	Multiple sclerosis (OCB status)	1,367 European ancestry OCB positive cases, 161 European ancestry OCB negative cases, 428 European ancestry controls	NA	6p21.32	HLA-DRA	rs3129871-?	NR	1E-16	(OCB positive vs. controls)	1.98	[1.68-2.32]	Illumina [495970]	N
613	chr6_ssto_hap7	3753008	3753009	rs3129871	23472185	Mero IL	2013-03-05	PLoS One	Oligoclonal band status in Scandinavian multiple sclerosis patients is associated with specific genetic risk alleles.	Multiple sclerosis (OCB status)	1,367 European ancestry OCB positive cases, 161 European ancestry OCB negative cases	3,029 European ancestry OCB positive cases, 374 European ancestry OCB negative cases	6p21.32	HLA-DRA	rs3129871-?	NR	6E-15		1.72	[1.59-1.86]	Illumina [495970]	N
613	chr6_ssto_hap7	3753139	3753140	rs9268633	33143745	Andlauer TFM	2020-11-04	BMC Med	Treatment- and population-specific genetic risk factors for anti-drug antibodies against interferon-beta: a GWAS.	Neutralising antibody response to interferon beta therapy in multiple sclerosis (antibody titre; IFN?-1a subcutaneous and intramuscular)	up to 2,000 German and Swedish ancestry individuals	up to 757 German and Swedish ancestry individuals	6p21.32		rs9268633-A	0.39	1E-17		0.2	[-0.0392-0.0392] unit increase	Illumina [8550834] (imputed)	N
613	chr6_ssto_hap7	3753965	3753966	rs2395179	29534301	Nishida N	2018-03-13	Hepatology	Key HLA-DRB1-DQB1 haplotypes and role of the BTNL2 gene for response to a hepatitis B vaccine.	Response to hepatitis B vaccine	107 Japanese ancestry low responder individuals, 351 Japanese ancestry intermediate responder individuals, 735 Japanese ancestry high responder individuals	NA	6p21.32	HLA-DRA	rs2395179-?		5E-14		0.221	unit decrease	Affymetrix [427664]	N
613	chr6_ssto_hap7	3754707	3754708	rs9268644	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DRA	rs9268644-A	NR	4E-13		0.022277	[0.016-0.028] unit increase	Affymetrix [323123] (imputed)	N
613	chr6_ssto_hap7	3754707	3754708	rs9268644	28425483	Qiu F	2017-04-20	Nat Commun	A genome-wide association study identifies six novel risk loci for primary biliary cholangitis.	Primary biliary cholangitis	1,122 Han Chinese ancestry cases, 4,036 Han Chinese ancestry controls	907 Han Chinese ancestry cases, 2,127 Han Chinese ancestry controls	6p21.32	HLA-DRA	rs9268644-?	0.823	8E-31		1.9607843	[1.75-2.22]	Illumina [776516]	N
613	chr6_ssto_hap7	3755158	3755159	rs3135394	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p21.32	HLA-DRA	rs3135394-G	0.344	3E-33				Illumina [118177]	N
613	chr6_ssto_hap7	3755158	3755159	rs3135394	24097067	Lessard CJ	2013-11-01	Nat Genet	Variants at multiple loci implicated in both innate and adaptive immune responses are associated with Sjogren's syndrome.	Sjogren's syndrome	395 European ancestry cases, 1,975 European ancestry controls	1,243 European ancestry cases, 4,779 European ancestry controls	6p21.32	HLA-DRA	rs3135394-G	0.11	5E-113		3.52	[3.02-4.10]	Illumina [648937]	N
613	chr6_ssto_hap7	3755158	3755159	rs3135394	19838195	Gateva V	2009-11-01	Nat Genet	A large-scale replication study identifies TNIP1, PRDM1, JAZF1, UHRF1BP1 and IL10 as risk loci for systemic lupus erythematosus.	Systemic lupus erythematosus	1,310 European ancestry cases, 7,859 European ancestry controls	1,963 European ancestry cases, 4,329 European ancestry controls	6p21.32	HLA-DRB1	rs3135394-G	0.1	2E-60		1.98	[1.84-2.14]	Illumina [~ 2100000] (imputed)	N
613	chr6_ssto_hap7	3755188	3755189	rs9268645	19430480	Barrett JC	2009-05-10	Nat Genet	Genome-wide association study and meta-analysis find that over 40 loci affect risk of type 1 diabetes.	Type 1 diabetes	7,514 European ancestry cases, 9,045 European ancestry controls	4,267 European ancestry cases, 4,670 European ancestry controls, 4,342 European ancestry trios from 2,319 families	6p21.32	MHC	rs9268645-?	NR	1E-100				Affymetrix, Illumina [841622] (imputed)	N
613	chr6_ssto_hap7	3755568	3755569	rs3129879	34212547	An J	2021-07-01	Allergy Asthma Immunol Res	Genome-Wide Association Study of Korean Asthmatics: A Comparison With UK Asthmatics.	Adult asthma	1,386 Korean ancestry cases, 5,205 Korean ancestry controls	NA	6p21.32		rs3129879-A	0.34	3E-6		0.78	[0.71-0.87]	Affymetrix [4922160] (imputed)	N
613	chr6_ssto_hap7	3755717	3755718	rs9268652	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Hepatitis B	1,425 European ancestry cases, 218,180 European ancestry controls	NA	6p21.32	HLA-DRA	rs9268652-G	0.74	3E-9		1.32	[1.25-1.38]	Illumina [at least 560000] (imputed)	N
613	chr6_ssto_hap7	3756191	3756192	rs3129882	24511991	Hill-Burns EM	2014-02-10	BMC Genomics	Identification of a novel Parkinson's disease locus via stratified genome-wide association study.	Parkinson's disease	1,565 European ancestry sproadic Parkinson's disease cases, 435 European ancestry familial Parkinson's disease cases, 1,986 European ancestry controls	1,528 European ancestry sporadic Parkinson's disease cases, 707 European ancestry familial Parkinson's disease cases, 796 European ancestry controls	6p21.32	HLA	rs3129882-G	0.395	5E-10	(Sporadic)	1.38	[1.24-1.52]	Illumina [811597]	N
613	chr6_ssto_hap7	3756191	3756192	rs3129882	24511991	Hill-Burns EM	2014-02-10	BMC Genomics	Identification of a novel Parkinson's disease locus via stratified genome-wide association study.	Parkinson's disease	1,565 European ancestry sproadic Parkinson's disease cases, 435 European ancestry familial Parkinson's disease cases, 1,986 European ancestry controls	1,528 European ancestry sporadic Parkinson's disease cases, 707 European ancestry familial Parkinson's disease cases, 796 European ancestry controls	6p21.32	HLA	rs3129882-G	0.395	3E-8		1.31	[1.19-1.43]	Illumina [811597]	N
613	chr6_ssto_hap7	3756191	3756192	rs3129882	21779181	Gorlova O	2011-07-14	PLoS Genet	Identification of novel genetic markers associated with clinical phenotypes of systemic sclerosis through a genome-wide association strategy.	Systemic sclerosis	2,296 European ancestry cases, 5,172 European ancestry controls	3,175 European ancestry cases, 4,210 European ancestry controls	6p21.32	HLA-DRA	rs3129882-?	0.44	2E-27	(ATA positive)	2.17	[1.88-2.50]	Illumina [NR] (imputed)	N
613	chr6_ssto_hap7	3756191	3756192	rs3129882	20711177	Hamza TH	2010-08-15	Nat Genet	Common genetic variation in the HLA region is associated with late-onset sporadic Parkinson's disease.	Parkinson's disease	2,000 European ancestry cases, 1,986 European ancestry controls	Up to 1,447 cases, 1,468 controls	6p21.32	HLA-DRA	rs3129882-G	0.40	2E-10		1.26	[1.17-1.35]	Illumina [811597]	N
613	chr6_ssto_hap7	3756369	3756370	rs17496549	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs17496549-T	0.2	9E-9		4.33	[3.31-5.67]	Illumina [NR] (imputed)	N
613	chr6_ssto_hap7	3757237	3757238	rs3129886	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Matrix metalloproteinase-10 levels	21,758 European ancestry individuals	9,173 individuals	6p21.32		rs3129886-T	0.25	6E-7		0.0572	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
613	chr6_ssto_hap7	3757352	3757353	rs3129887	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DRA	rs3129887-A	NR	4E-11		0.0236955	[0.017-0.031] unit decrease	Affymetrix [319769] (imputed)	N
613	chr6_ssto_hap7	3757352	3757353	rs3129887	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DRA	rs3129887-A	NR	2E-10		0.0226864	[0.016-0.03] unit decrease	Affymetrix [319769] (imputed)	N
613	chr6_ssto_hap7	3757352	3757353	rs3129887	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DRA	rs3129887-A	NR	2E-12		0.0256	[0.019-0.033] unit decrease	Affymetrix [321169] (imputed)	N
613	chr6_ssto_hap7	3757352	3757353	rs3129887	28062665	Kawashima M	2017-01-05	Hum Mol Genet	Genome-wide association studies identify PRKCB as a novel genetic susceptibility locus for primary biliary cholangitis in the Japanese population.	Primary biliary cholangitis	1,381 Japanese ancestry cases, 1,505 Japanese ancestry controls	512 Japanese ancestry cases, 6,512 Japanese ancestry controls	6p21.32	HLA-DRA, HLA-DRB1	rs3129887-?	NR	2E-29		3.13	[2.54-3.85]	Affymetrix [425290]	N
613	chr6_ssto_hap7	3757602	3757603	rs9268659	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	HLA-DRA	rs9268659-T	NR	2E-9		0.0171616	[0.012-0.023] unit decrease	Affymetrix [321114] (imputed)	N
613	chr6_ssto_hap7	3757602	3757603	rs9268659	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Perceived unattractiveness to mosquitoes	16,576 European ancestry individuals	NA	6p21.32	HLA-DRA	rs9268659-T	0.42	2E-9		0.139734	[0.094-0.186] unit increase	Illumina [7433384] (imputed)	N
613	chr6_ssto_hap7	3757696	3757697	rs8084	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DRA	rs8084-A	NR	3E-21		0.027016	[0.021-0.033] unit decrease	Affymetrix [321169] (imputed)	N
613	chr6_ssto_hap7	3758037	3758038	rs2239805	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.32	HLA-DRA, HLA-DRB9	rs2239805-G	0.169007	1E-12	(EA, Complement C4)	0.4079	[0.3-0.52] unit decrease	Affymetrix [509946]	N
613	chr6_ssto_hap7	3758307	3758308	rs7192	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs7192-T	0.49	3E-9		0.15	[0.11-0.22]	Illumina [NR] (imputed)	N
613	chr6_ssto_hap7	3758307	3758308	rs7192	22541561	Zhao H	2012-04-26	Am J Hum Genet	A genome-wide association study reveals that variants within the HLA region are associated with risk for nonobstructive azoospermia.	Non-obstructive azoospermia	802 Han Chinese ancestry cases, 1,863 Han Chinese ancestry controls	1,424 Han Chinese ancestry cases, 2,713 Han Chinese ancestry controls	6p21.32	HLA-DRA	rs7192-T	0.26	3E-6		1.29	[NR]	Affymetrix, Illumina [912924]	N
613	chr6_ssto_hap7	3758507	3758508	rs2239802	28008999	Ostrowski J	2016-12-23	Sci Rep	Genetic architecture differences between pediatric and adult-onset inflammatory bowel diseases in the Polish population.	Ulcerative colitis	269 Polish ancestry child cases, 259 Polish ancestry adult cases, 582 Polish ancestry controls	121 Polish ancestry child cases, 85 Polish ancestry adult cases, 352 Polish ancestry controls	6p21.32	HLA-DRA	rs2239802-?		2E-7	(Adults)	1.7715251	[1.43-2.19]	Illumina [2612357]	N
613	chr6_ssto_hap7	3759057	3759058	rs4935356	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	6p21.32	HLA-DRA	rs4935356-T	0.756088	8E-22		0.0245501	[0.02-0.03] unit decrease	Affymetrix [NR] (imputed)	N
613	chr6_ssto_hap7	3759064	3759065	rs3135390	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DRA	rs3135390-C	NR	6E-9		0.0224213	[0.015-0.03] unit increase	Affymetrix [323123] (imputed)	N
613	chr6_ssto_hap7	3759104	3759105	rs3177928	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs3177928-A	0.21	2E-8		4.13	[3.16-5.38]	Illumina [NR] (imputed)	N
613	chr6_ssto_hap7	3759104	3759105	rs3177928	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.32	NR	rs3177928-G	NR	1E-9		0.033	unit decrease	Affymetrix [at least 7091467] (imputed)	N
613	chr6_ssto_hap7	3759104	3759105	rs3177928	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.32	NR	rs3177928-G	0.856	5E-7	(EA)	0.03	unit decrease	Affymetrix [at least 7091467] (imputed)	N
613	chr6_ssto_hap7	3759104	3759105	rs3177928	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.32	NR	rs3177928-G	NR	1E-15		0.049	unit decrease	Affymetrix [at least 7091467] (imputed)	N
613	chr6_ssto_hap7	3759104	3759105	rs3177928	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.32	NR	rs3177928-G	0.856	5E-12	(EA)	0.045	unit decrease	Affymetrix [at least 7091467] (imputed)	N
613	chr6_ssto_hap7	3759104	3759105	rs3177928	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.32	NR	rs3177928-G	NR	9E-10		0.038	unit decrease	Affymetrix [at least 7091467] (imputed)	N
613	chr6_ssto_hap7	3759104	3759105	rs3177928	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.32	NR	rs3177928-G	0.856	2E-7	(EA)	0.035	unit decrease	Affymetrix [at least 7091467] (imputed)	N
613	chr6_ssto_hap7	3759104	3759105	rs3177928	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Total cholesterol levels	32,576 East Asian ancestry individuals, 187,365 European ancestry individuals	10,855 Chinese ancestry individuals	6p21.32	HLA	rs3177928-A	0.181	5E-22	(Trans-ethnic initial)	0.0482	[0.038-0.058] unit increase (EA Beta values)	Affymetrix, Illumina [up to 1900000] (imputed)	N
613	chr6_ssto_hap7	3759104	3759105	rs3177928	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	LDL cholesterol levels	32,285 East Asian ancestry individuals, 173,082 European ancestry individuals	8,478 Chinese ancestry individuals	6p21.32	HLA	rs3177928-A	0.181	5E-17	(Trans-ethnic initial)	0.0452	[0.035-0.055] unit increase (EA Beta value)	Affymetrix, Illumina [~ 1900000] (imputed)	N
613	chr6_ssto_hap7	3759104	3759105	rs3177928	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	6p21.32	HLA	rs3177928-A	0.17	3E-17		0.045	[NR] unit increase	NR [NR] (imputed)	N
613	chr6_ssto_hap7	3759104	3759105	rs3177928	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	6p21.32	HLA	rs3177928-A	0.17	1E-21		0.048	[NR] unit increase	NR [NR] (imputed)	N
613	chr6_ssto_hap7	3759104	3759105	rs3177928	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	LDL cholesterol	95,454 European ancestry individuals	NA	6p21.32	HLA	rs3177928-A	0.16	2E-15		1.83	[1.36-2.3] mg/dL increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
613	chr6_ssto_hap7	3759104	3759105	rs3177928	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	Cholesterol, total	100,184 European ancestry individuals	NA	6p21.32	HLA	rs3177928-A	0.16	4E-19		2.31	[1.78-2.84] mg/dL increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
613	chr6_ssto_hap7	3759149	3759150	rs7194	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.32	HLA-DRA	rs7194-A	0.5927	6E-9		0.0221	[0.015-0.03] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
613	chr6_ssto_hap7	3759149	3759150	rs7194	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6p21.32	BTNL2	rs7194-A	0.5927	5E-8		0.0247	[0.016-0.034] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
613	chr6_ssto_hap7	3759149	3759150	rs7194	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.32	HLA-DRA	rs7194-?	0.5927	1E-7				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
613	chr6_ssto_hap7	3759208	3759209	rs7195	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs7195-A	0.49	3E-9		0.15	[0.11-0.22]	Illumina [NR] (imputed)	N
613	chr6_ssto_hap7	3759261	3759262	rs1051336	29857070	Gao J	2018-05-29	J Invest Dermatol	Association study and fine-mapping major histocompatibility complex analysis of pemphigus vulgaris in a Han Chinese population.	Pemphigus vulgaris	240 Han Chinese ancestry cases, 1,031 Han Chinese ancestry controls	252 Han Chinese ancestry cases, 1,852 Han Chinese ancestry controls	6p21.32	NR	rs1051336-?	NR	3E-6	(conditioned on HLA-DRB1*14:04 and rs7454108)	3.03	[NR]	Illumina [802980]	N
613	chr6_ssto_hap7	3759720	3759721	rs3135388	19525953	De Jager PL	2009-06-14	Nat Genet	Meta-analysis of genome scans and replication identify CD6, IRF8 and TNFRSF1A as new multiple sclerosis susceptibility loci.	Multiple sclerosis	2,624 European ancestry cases, 7,220 European ancestry controls	2,215 European ancestry cases, 2,116 European ancestry controls		HLA-DRB1	rs3135388-A	0.22	4E-225		2.75	[2.46-3.07]	Affymetrix, Illumina [~ 2560000] (imputed)	N
613	chr6_ssto_hap7	3759720	3759721	rs3135388	17660530	Hafler DA	2007-07-29	N Engl J Med	Risk alleles for multiple sclerosis identified by a genomewide study.	Multiple sclerosis	931 European ancestry trios, 2,431 European ancestry controls	609 European ancestry trios, 2,322 European ancestry cases, 2,987 European ancestry controls		HLA-DRA	rs3135388-A	0.23	9E-81		1.99	[1.84-2.15]	Affymetrix [334923]	N
613	chr6_ssto_hap7	3759763	3759764	rs2213586	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs2213586-A	0.49	3E-9		0.15	[0.11-0.22]	Illumina [NR] (imputed)	N
613	chr6_ssto_hap7	3759819	3759820	rs2213585	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs2213585-G	0.48	3E-9		0.15	[0.11-0.22]	Illumina [NR] (imputed)	N
613	chr6_ssto_hap7	3760128	3760129	rs2227139	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs2227139-G	0.49	3E-9		0.15	[0.11-0.22]	Illumina [NR] (imputed)	N
613	chr6_ssto_hap7	3760128	3760129	rs2227139	19820697	Soranzo N	2009-10-11	Nat Genet	A genome-wide meta-analysis identifies 22 loci associated with eight hematological parameters in the HaemGen consortium.	Hematological parameters	4,627 European ancestry individuals	9,316 European ancestry individuals	6p21.32	intergenic	rs2227139-G	NR	1E-7	(WBC)	0.02	[0.01-0.03] 10^9/l increase	Affymetrix, Illumina [~ 2110000] (imputed)	N
613	chr6_ssto_hap7	3760214	3760215	rs3129889	22190364	Patsopoulos NA	2011-12-01	Ann Neurol	Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.	Multiple sclerosis	5,545 European ancestry cases, 12,153 European ancestry controls	NA	6p21.32	HLA-DRB1	rs3129889-G	0.20	1E-206		2.97	[NR]	Affymetrix, Illumina [2529394]	N
613	chr6_ssto_hap7	3760226	3760227	rs3763326	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (mother's age at death or mother's attained age)	up to 699,000 individuals	NA	6p21.32	NR	rs3763326-A		5E-6				Illumina [458525]	N
613	chr6_ssto_hap7	3760499	3760500	rs3763327	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs3763327-G	0.49	3E-9		0.15	[0.11-0.22]	Illumina [NR] (imputed)	N
613	chr6_ssto_hap7	3760940	3760941	rs3129890	26272072	Jiang X	2015-08-13	Rheumatology (Oxford)	An Immunochip-based interaction study of contrasting interaction effects with smoking in ACPA-positive versus ACPA-negative rheumatoid arthritis.	ACPA-positive rheumatoid arthritis (smoking interaction)	340 European ancestry never-smoker cases, 493 European ancestry ever-smoker cases, 746 European ancestry never-smoker controls, 994 European ancestry ever-smoker controls	187 European ancestry never-smoker cases, 421 European ancestry ever-smoker cases, 461 European ancestry never-smoker controls, 447 European ancestry ever-smoker controls	6p21.32	NR	rs3129890-?	NR	1E-10	(adjusted for HLA shared epitope)	2.5	[1.89-3.57]	Illumina [133648] (imputed)	N
613	chr6_ssto_hap7	3760940	3760941	rs3129890	21804548	Hirota T	2011-07-31	Nat Genet	Genome-wide association study identifies three new susceptibility loci for adult asthma in the Japanese population.	Asthma	1,532 Japanese ancestry cases, 3,304 Japanese ancestry controls	5,639 Japanese ancestry cases, 24,608 Japanese ancestry controls	6p21.32	HLA-DRA	rs3129890-T	0.61	5E-13		1.15	[1.11-1.20]	Illumina [458847]	N
613	chr6_ssto_hap7	3760954	3760955	rs9268670	33768542	Liu Y	2021-03-26	Clin Pharmacol Ther	Class II HLA Variants Associate with Risk of Pegaspargase Hypersensitivity.	Asparaginase hypersensitivity in acute lymphoblastic leukemia	310 African ancestry individuals, 798 Native American individuals, 387 individuals	NA	6p21.32	NR	rs9268670-T	NR	7E-7		0.56	[NR]	Illumina [NR] (imputed)	N
613	chr6_ssto_hap7	3760954	3760955	rs9268670	33768542	Liu Y	2021-03-26	Clin Pharmacol Ther	Class II HLA Variants Associate with Risk of Pegaspargase Hypersensitivity.	Asparaginase hypersensitivity in acute lymphoblastic leukemia	310 African ancestry individuals, 798 Native American individuals, 112 Asian ancestry individuals, 387 individuals	NA	6p21.32	HLA-DRA	rs9268670-T	NR	2E-7		0.55		Illumina [NR] (imputed)	N
613	chr6_ssto_hap7	3760957	3760958	rs9268671	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs9268671-A	0.339438	4E-8		0.023014	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
613	chr6_ssto_hap7	3760957	3760958	rs9268671	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DRA	rs9268671-A	NR	4E-19		0.0265032	[0.021-0.032] unit decrease	Affymetrix [319769] (imputed)	N
613	chr6_ssto_hap7	3760957	3760958	rs9268671	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DRA	rs9268671-A	NR	1E-12		0.0233694	[0.017-0.03] unit decrease	Affymetrix [323858] (imputed)	N
613	chr6_ssto_hap7	3760957	3760958	rs9268671	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DRA	rs9268671-A	NR	5E-18		0.0256545	[0.02-0.031] unit decrease	Affymetrix [319769] (imputed)	N
613	chr6_ssto_hap7	3760957	3760958	rs9268671	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	HLA-DRA	rs9268671-A	NR	4E-11		0.0217286	[0.015-0.028] unit decrease	Affymetrix [127266] (imputed)	N
613	chr6_ssto_hap7	3760957	3760958	rs9268671	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DRA	rs9268671-A	NR	2E-11		0.0199636	[0.014-0.026] unit increase	Affymetrix [321016] (imputed)	N
613	chr6_ssto_hap7	3760957	3760958	rs9268671	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DRA	rs9268671-A	NR	3E-22		0.0312717	[0.025-0.038] unit increase	Affymetrix [323123] (imputed)	N
613	chr6_ssto_hap7	3760957	3760958	rs9268671	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	6p21.32	HLA-DRA	rs9268671-G	0.661005	1E-11		0.018096138	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
613	chr6_ssto_hap7	3761336	3761337	rs9268677	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DRA	rs9268677-A	NR	4E-15		0.0222453	[0.017-0.028] unit increase	Affymetrix [319769] (imputed)	N
613	chr6_ssto_hap7	3761336	3761337	rs9268677	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DRA	rs9268677-A	NR	1E-14		0.0218771	[0.016-0.027] unit increase	Affymetrix [319769] (imputed)	N
613	chr6_ssto_hap7	3761745	3761746	rs3129891	26272072	Jiang X	2015-08-13	Rheumatology (Oxford)	An Immunochip-based interaction study of contrasting interaction effects with smoking in ACPA-positive versus ACPA-negative rheumatoid arthritis.	ACPA-positive rheumatoid arthritis (smoking interaction)	340 European ancestry never-smoker cases, 493 European ancestry ever-smoker cases, 746 European ancestry never-smoker controls, 994 European ancestry ever-smoker controls	187 European ancestry never-smoker cases, 421 European ancestry ever-smoker cases, 461 European ancestry never-smoker controls, 447 European ancestry ever-smoker controls	6p21.32	NR	rs3129891-?	NR	2E-9	(adjusted for HLA shared epitope)	2.5	[1.89-3.7]	Illumina [133648] (imputed)	N
613	chr6_ssto_hap7	3761818	3761819	rs9469112	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	6p21.32	HLA-DRA	rs9469112-T	0.1734	1E-10		6.4424515	NR z-unit increase	Affymetrix, Illumina [up to 10847151] (imputed)	N
613	chr6_ssto_hap7	3761876	3761877	rs28895028	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs28895028-A	0.21	2E-8		4.13	[3.16-5.38]	Illumina [NR] (imputed)	N
613	chr6_ssto_hap7	3762523	3762524	rs12529093	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs12529093-G	0.21	2E-8		4.13	[3.16-5.38]	Illumina [NR] (imputed)	N
613	chr6_ssto_hap7	3762640	3762641	rs13209234	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs13209234-A	0.21	2E-8		4.13	[3.16-5.38]	Illumina [NR] (imputed)	N
613	chr6_ssto_hap7	3762745	3762746	rs13209059	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs13209059-G	0.21	2E-8		4.13	[3.16-5.38]	Illumina [NR] (imputed)	N
613	chr6_ssto_hap7	3763927	3763928	rs28895057	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs28895057-G	0.098	1E-15	(Ubiquitin carboxyl-terminal hydrolase 25, USP25.9215.117.3)	0.39	[0.29-0.49] unit increase	Affymetrix [10572788] (imputed)	N
613	chr6_ssto_hap7	3764581	3764582	rs6937167	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.32	NR	rs6937167-AT	0.01	3E-9	(women)	1.02959	[0.7-1.36] unit increase	Affymetrix [up to 8900000] (imputed)	N
613	chr6_ssto_hap7	3764818	3764819	rs6937545	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DRA	rs6937545-A	NR	3E-16		0.0268745	[0.02-0.033] unit decrease	Affymetrix [323858] (imputed)	N
613	chr6_ssto_hap7	3764818	3764819	rs6937545	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	HLA-DRA	rs6937545-A	NR	4E-14		0.0248417	[0.018-0.031] unit decrease	Affymetrix [127266] (imputed)	N
613	chr6_ssto_hap7	3766255	3766256	rs28895103	33649182	Penova M	2021-03-01	Proc Natl Acad Sci U S A	Genome wide association study of HTLV-1-associated myelopathy/tropical spastic paraparesis in the Japanese population.	HTLV-1 associated myelopathy	731 Japanese ancestry cases, 846 Japanese ancestry controls	NA	6p21.32		rs28895103-G	0.95	1E-8		0.44	[0.33-0.58]	Illumina [126394]	N
613	chr6_ssto_hap7	3766750	3766751	rs3135384	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	Systemic lupus erythematosus	1,639 East Asian ancestry cases, 2,410 East Asian ancestry controls	NA			rs3135384-G	NR	7E-26		0.5329	[0.43-0.63] unit decrease	Illumina [NR] (imputed)	N
613	chr6_ssto_hap7	3766970	3766971	rs7754768	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs7754768-C	0.49	7E-10		0.14	[0.10-0.20]	Illumina [NR] (imputed)	N
613	chr6_ssto_hap7	3766990	3766991	rs9268775	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	6p21.32	HLA-DRA	rs9268775-T	0.0541	3E-6		0.0884	[0.052-0.125] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
613	chr6_ssto_hap7	3767288	3767289	rs9268781	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DRB9	rs9268781-T	NR	5E-17		0.0247953	[0.019-0.031] unit increase	Affymetrix [321016] (imputed)	N
613	chr6_ssto_hap7	3767646	3767647	rs9268786	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	6p21.32		rs9268786-C	NR	3E-28		0.0241	[0.02-0.028] unit increase	Affymetrix, Illumina [20529698] (imputed)	N
613	chr6_ssto_hap7	3767734	3767735	rs111255178	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	6p21.32	HLA-DRB9	rs111255178-T	0.1435	3E-6		0.0558	[0.032-0.079] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
613	chr6_ssto_hap7	3767864	3767865	rs9268791	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD25 on CD28+ CD4+ T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9268791-C	0.74777	1E-10		0.2077	[0.14-0.27] unit decrease	Illumina [17954496] (imputed)	N
613	chr6_ssto_hap7	3768260	3768261	rs3129897	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	HLA-DRB9	rs3129897-A	0.156	2E-29	(Interleukin-21, IL21.7124.18.3)	0.37	[0.31-0.43] unit decrease	Affymetrix [10572788] (imputed)	N
613	chr6_ssto_hap7	3768295	3768296	rs28895136	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs28895136-C	0.21	2E-8		4.13	[3.16-5.38]	Illumina [NR] (imputed)	N
613	chr6_ssto_hap7	3768982	3768983	rs2097442	34642315	Ferreiro-Iglesias A	2021-10-12	Nat Commun	Germline determinants of humoral immune response to HPV-16 protect against oropharyngeal cancer.	Oropharynx cancer and human papilloma virus 16 negative oropharyngeal cancer	2,359 European ancestry cases, 565 European ancestry controls	NA	6p21.32		rs2097442-A	NR	1E-6		1.2355		Illumina [up to 7574753] (imputed)	N
613	chr6_ssto_hap7	3768982	3768983	rs2097442	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Non-Hodgkin's lymphoma	2,400 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs2097442-A	NR	3E-19		1.3187393	NR	Affymetrix [7846216] (imputed)	N
613	chr6_ssto_hap7	3770308	3770309	rs140302846	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	6p21.32	NR	rs140302846-?	NR	1E-15				Affymetrix [~ 8270000] (imputed)	N
613	chr6_ssto_hap7	3770308	3770309	rs140302846	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs140302846-?	NR	7E-13				Affymetrix [~ 8270000] (imputed)	N
613	chr6_ssto_hap7	3770715	3770716	rs9268807	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	HLA	rs9268807-C	0.208	5E-117		1.604	[1.56-1.65]	Illumina [11270530] (imputed)	N
613	chr6_ssto_hap7	3770831	3770832	rs13220657	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs13220657-T	0.21	2E-8		4.13	[3.16-5.38]	Illumina [NR] (imputed)	N
613	chr6_ssto_hap7	3771170	3771171	rs9268811	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DRB9	rs9268811-T	NR	1E-14		0.0222291	[0.017-0.028] unit increase	Affymetrix [321169] (imputed)	N
613	chr6_ssto_hap7	3771394	3771395	rs9268813	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	6p21.32	NR	rs9268813-?	NR	8E-14				Affymetrix [~ 8270000] (imputed)	N
613	chr6_ssto_hap7	3771394	3771395	rs9268813	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.32	NR	rs9268813-?	NR	8E-15				Affymetrix [~ 8270000] (imputed)	N
613	chr6_ssto_hap7	3771394	3771395	rs9268813	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs9268813-?	NR	1E-17				Affymetrix [~ 8270000] (imputed)	N
613	chr6_ssto_hap7	3771682	3771683	rs7763262	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	6p21.32	HLA-DQB1, HLA-DQA1, HLA-DRB1	rs7763262-C	0.72	1E-10	(East Asian)	1.3	[NR]	Illumina [> 1000000] (imputed)	N
613	chr6_ssto_hap7	3771682	3771683	rs7763262	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	6p21.32	HLA-DQB1, HLA-DQA1, HLA-DRB1	rs7763262-C	0.69	2E-38		1.41	[NR]	Illumina [> 1000000] (imputed)	N
613	chr6_ssto_hap7	3771682	3771683	rs7763262	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	6p21.32	HLA-DQB1, HLA-DQA1, HLA-DRB1	rs7763262-C	0.69	1E-30	(EA)	1.49	[NR]	Illumina [> 1000000] (imputed)	N
613	chr6_ssto_hap7	3772105	3772106	rs28895205	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs28895205-G	0.21	2E-8		4.13	[3.16-5.38]	Illumina [NR] (imputed)	N
613	chr6_ssto_hap7	3772288	3772289	rs7744304	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DRB9	rs7744304-G	NR	9E-27		0.0345924	[0.028-0.041] unit increase	Affymetrix [323123] (imputed)	N
613	chr6_ssto_hap7	3772563	3772564	rs41291794	27927641	Ombrello MJ	2016-12-07	Ann Rheum Dis	Genetic architecture distinguishes systemic juvenile idiopathic arthritis from other forms of juvenile idiopathic arthritis: clinical and therapeutic implications.	Systemic juvenile idiopathic arthritis	178 European ancestry cases, 434 European ancestry controls, 81 Hispanic/Latin American cases, 177 Hispanic/Latin American controls, 511 cases, 6,336 controls	NA	6p21.32	HLA-DRA	rs41291794-?		4E-15	(Additive)	2.1	[1.80-2.60]	Illumina [5600610] (imputed)	N
613	chr6_ssto_hap7	3772784	3772785	rs6457592	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DRB9	rs6457592-C	NR	2E-10		0.0179035	[0.012-0.023] unit decrease	Affymetrix [321016] (imputed)	N
613	chr6_ssto_hap7	3773807	3773808	rs113164910	27668658	Iotchkova V	2016-11-01	Nat Genet	Discovery and refinement of genetic loci associated with cardiometabolic risk using dense imputation maps.	Cardiometabolic and hematological traits	up to 35,981 European ancestry individuals	up to 102,505 European ancestry individuals	6p21.32	HLA-DRA	rs113164910-AAC		4E-54	(WBC)	0.008	[0.008-0.008] unit increase	Affymetrix, Illumina [17000000] (imputed)	N
613	chr6_ssto_hap7	3773902	3773903	rs1547422	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD45 on CD4+ T cell	3,113 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs1547422-G	0.77074	1E-9		0.204	[0.14-0.27] unit decrease	Illumina [18030777] (imputed)	N
613	chr6_ssto_hap7	3773982	3773983	rs1548306	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycoprotein acetyls levels	115,082 European ancestry individuals	NA	6p21.32		rs1548306-A	0.337505	3E-30		0.0494261	[0.041-0.058] unit decrease	NR [11722792] (imputed)	N
613	chr6_ssto_hap7	3773982	3773983	rs1548306	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA	6p21.32	NR	rs1548306-?	NR	9E-7		0.0374	[0.023-0.052] unit increase	Illumina [at least 560000] (imputed)	N
613	chr6_ssto_hap7	3773982	3773983	rs1548306	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	6p21.32	Intergenic	rs1548306-T	NR	6E-10		0.0234279	[0.016-0.031] unit decrease	Illumina [13519193] (imputed)	N
613	chr6_ssto_hap7	3773982	3773983	rs1548306	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.32	Intergenic	rs1548306-T	NR	1E-11	(women)	0.0332253	[0.024-0.043] unit decrease	Illumina [13520550] (imputed)	N
613	chr6_ssto_hap7	3773982	3773983	rs1548306	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.32	HLA-DRA, HLA-DRB5	rs1548306-T	0.634	9E-14		0.0256004	[0.019-0.032] unit decrease	Illumina [13520550] (imputed)	N
613	chr6_ssto_hap7	3773982	3773983	rs1548306	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	6p21.32	HLA-DRA, HLA-DRB5	rs1548306-T	0.634	5E-29		0.0446701	[0.037-0.052] unit decrease	Illumina [13520550] (imputed)	N
613	chr6_ssto_hap7	3774184	3774185	rs28732229	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs28732229-T	0.21	2E-8		4.13	[3.16-5.38]	Illumina [NR] (imputed)	N
613	chr6_ssto_hap7	3774551	3774552	rs9268831	33558538	Gebresilase T	2021-02-08	Sci Rep	Replication of HLA class II locus association with susceptibility to podoconiosis in three Ethiopian ethnic groups.	Podoconiosis	1,137 Ethiopian ancestry cases, 1,152 Ethiopian ancestry controls	NA	6p21.32	HLA-DRB9	rs9268831-T	0.46	2E-9				Illumina [2201695]	N
613	chr6_ssto_hap7	3774551	3774552	rs9268831	29534301	Nishida N	2018-03-13	Hepatology	Key HLA-DRB1-DQB1 haplotypes and role of the BTNL2 gene for response to a hepatitis B vaccine.	Response to hepatitis B vaccine	107 Japanese ancestry low responder individuals, 351 Japanese ancestry intermediate responder individuals, 735 Japanese ancestry high responder individuals	NA	6p21.32	HLA-DRAB5	rs9268831-?		1E-13		0.192	unit decrease	Affymetrix [427664]	N
613	chr6_ssto_hap7	3774592	3774593	rs9268832	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs9268832-T	0.49	7E-10		0.14	[0.10-0.20]	Illumina [NR] (imputed)	N
613	chr6_ssto_hap7	3774918	3774919	rs9268835	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DRB9	rs9268835-A	NR	4E-20		0.0276383	[0.022-0.034] unit increase	Affymetrix [319769] (imputed)	N
613	chr6_ssto_hap7	3774918	3774919	rs9268835	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DRB9	rs9268835-A	NR	4E-20		0.0276817	[0.022-0.034] unit increase	Affymetrix [319769] (imputed)	N
613	chr6_ssto_hap7	3774918	3774919	rs9268835	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	HLA-DRB9	rs9268835-A	NR	7E-13		0.0218474	[0.016-0.028] unit increase	Affymetrix [321114] (imputed)	N
613	chr6_ssto_hap7	3775088	3775089	rs6903608	24920014	Cozen W	2014-06-12	Nat Commun	A meta-analysis of Hodgkin lymphoma reveals 19p13.3 TCF3 as a novel susceptibility locus.	Hodgkin's lymphoma	1,816 European ancestry cases, 7,877 European ancestry controls	1,281 European ancestry cases, 3,218 European ancestry controls	6p21.32	HLA class II, HLA class I	rs6903608-C	0.30	7E-31		1.64	[1.51-1.78]	Affymetrix, Illumina [1004829] (imputed)	N
613	chr6_ssto_hap7	3775088	3775089	rs6903608	24149102	Frampton M	2013-10-22	Nat Commun	Variation at 3p24.1 and 6q23.3 influences the risk of Hodgkin's lymphoma.	Hodgkin's lymphoma	1,465 European ancestry cases, 6,417 European ancestry controls	1,071 European ancestry cases, 953 cases, 1,853 controls	6p21.32	NR	rs6903608-G	0.27	5E-27		1.62	[NR]	Illumina [296129]	N
613	chr6_ssto_hap7	3775088	3775089	rs6903608	21037568	Enciso-Mora V	2010-10-31	Nat Genet	A genome-wide association study of Hodgkin's lymphoma identifies new susceptibility loci at 2p16.1 (REL), 8q24.21 and 10p14 (GATA3).	Hodgkin's lymphoma	589 European ancestry cases, 5,199 European ancestry controls	2,057 European ancestry cases, 3,416 European ancestry controls	6p21.32	HLA-DRA	rs6903608-G	0.27	3E-50		1.7	[1.58-1.82]	Illumina [504374]	N
613	chr6_ssto_hap7	3775575	3775576	rs9268839	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	6p21.32	HLA-DRB1	rs9268839-A	NR	1E-100		0.737171	[0.52-0.95] unit decrease	Illumina [8380626] (imputed)	N
613	chr6_ssto_hap7	3775575	3775576	rs9268839	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	6p21.32	HLA-DRB1	rs9268839-A	0.750718391	3E-7	(AA)	0.623752	[0.39-0.86] unit decrease	Illumina [8380626] (imputed)	N
613	chr6_ssto_hap7	3775575	3775576	rs9268839	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	6p21.32	HLA-DRB1	rs9268839-A	0.56	4E-134	(East Asian)	0.64731	[0.6-0.7] unit decrease	Illumina [8380626] (imputed)	N
613	chr6_ssto_hap7	3775575	3775576	rs9268839	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	6p21.32	HLA-DRB1	rs9268839-A	0.55	1E-250	(EA)	0.90412	[0.87-0.94] unit decrease	Illumina [8380626] (imputed)	N
613	chr6_ssto_hap7	3775575	3775576	rs9268839	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	6p21.32	HLA-DRB1	rs9268839-G	0.45	1E-250	(EA)	2.47	[2.39-2.55]	Affymetrix, Illumina [up to 9739303] (imputed)	N
613	chr6_ssto_hap7	3775575	3775576	rs9268839	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	6p21.32	HLA-DRB1	rs9268839-G	0.45	1E-250		2.28	[2.22-2.34]	Affymetrix, Illumina [up to 9739303] (imputed)	N
613	chr6_ssto_hap7	3775575	3775576	rs9268839	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	6p21.32	HLA-DRB1	rs9268839-G	0.44	2E-145	(East Asian)	1.9	[1.81-1.99]	Affymetrix, Illumina [up to 9739303] (imputed)	N
613	chr6_ssto_hap7	3776007	3776008	rs9268845	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	HLA-DRB9	rs9268845-T	NR	1E-11		0.0248689	[0.018-0.032] unit decrease	Affymetrix [127266] (imputed)	N
613	chr6_ssto_hap7	3776048	3776049	rs9268846	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DRB9	rs9268846-G	NR	5E-10		0.0201434	[0.014-0.026] unit increase	Affymetrix [323858] (imputed)	N
613	chr6_ssto_hap7	3776048	3776049	rs9268846	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	HLA-DRB9	rs9268846-G	NR	2E-9		0.019558	[0.013-0.026] unit increase	Affymetrix [127266] (imputed)	N
613	chr6_ssto_hap7	3776106	3776107	rs9268848	32890573	Yan Q	2020-09-02	J Allergy Clin Immunol	A genome-wide association study of asthma hospitalizations in adults.	Exacerbations requiring hospitalisation in asthma	1,658 British ancestry cases, 32,509 British ancestry controls	NA	6p21.32	NR	rs9268848-G	0.42	2E-6		0.84	[NR]	Affymetrix [87696888] (imputed)	N
613	chr6_ssto_hap7	3776106	3776107	rs9268848	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	6p21.32	HLA-DRB9	rs9268848-A	0.551419	2E-25		0.025138251	[0.02-0.03] unit increase	Affymetrix [93095623] (imputed)	N
613	chr6_ssto_hap7	3776106	3776107	rs9268848	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	6p21.32	NR	rs9268848-?	NR	3E-20				Affymetrix [~ 8270000] (imputed)	N
613	chr6_ssto_hap7	3776106	3776107	rs9268848	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	6p21.32	HLA-DRA	rs9268848-A	0.6148	6E-9	(East Asian)	0.0347	[0.023-0.046] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
613	chr6_ssto_hap7	3776385	3776386	rs9268851	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein H6PD	5,364 Icelandic ancestry individuals	NA	6p21.32		rs9268851-A	0.2209	1E-96		0.45447	[0.41-0.5] unit increase	Illumina [7506463] (imputed)	N
613	chr6_ssto_hap7	3776446	3776447	rs9268853	30552108	Kawabata Y	2018-12-14	Diabetes	A genome-Wide Association Study Confirming a Strong Effect of HLA and Identifying Variants in CSAD/lnc-ITGB7-1 on Chromosome 12q13.13 Associated with Susceptibility to Fulminant Type 1 Diabetes.	Fulminant type 1 diabetes	257 Japanese ancestry cases, 419 Japanese ancestry controls	NA	6p21.32	HLA	rs9268853-?	NR	2E-23		3.18	[2.53-4.01]	Affymetrix [426851] (imputed)	N
613	chr6_ssto_hap7	3776446	3776447	rs9268853	23511034	Yang SK	2013-04-01	Inflamm Bowel Dis	Genome-wide association study of ulcerative colitis in Koreans suggests extensive overlapping of genetic susceptibility with Caucasians.	Ulcerative colitis	388 Korean ancestry cases, 739 Korean ancestry controls	417 Korean ancestry cases, 732 Korean ancestry controls	6p21.32	MHC	rs9268853-T	0.64	3E-6		1.37	[1.20-1.56]	Illumina [581060]	N
613	chr6_ssto_hap7	3776446	3776447	rs9268853	23349640	Vijai J	2013-01-17	PLoS Genet	Susceptibility loci associated with specific and shared subtypes of lymphoid malignancies.	Lymphoma	275 Follicular non-Hodgkin's Lymphoma cases, 269 diffuse large B-cell non-Hodgkin's Lymphoma cases, 198 other non-Hodgkin's Lymphoma cases, 202 Hodgkin's Lymphoma cases, 4,044 controls	202 European ancestry Follicular non-Hodgkin's Lymphoma cases, 367 European ancestry diffuse large B-cell non-Hodgkin's Lymphoma cases, 577 European ancestry other non-Hodgkin's Lymphoma cases, 99 European ancestry Hodgkin's Lymphoma cases, 2,596 European ancestry controls	6p21.32	BTLN2, HLA-DRA, HLA-DRB5, HLA-DRB1	rs9268853-C	NR	2E-10	(FL)	1.56	[NR]	Affymetrix [530583]	N
613	chr6_ssto_hap7	3776446	3776447	rs9268853	21297633	Anderson CA	2011-02-06	Nat Genet	Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47.	Ulcerative colitis	6,687 European ancestry cases, 19,718 European ancestry controls	9,628 European ancestry cases, 12,917 European ancestry controls	6p21.32	HLA-DRA, HLA-DRB5, BTNL2, HLA-DRB1, HLA-DQA1	rs9268853-T	0.66	1E-55		1.4	[1.34-1.47]	Affymetrix, Illumina [~ 1100000] (imputed)	N
613	chr6_ssto_hap7	3776522	3776523	rs9268856	24943344	Ferrari R	2014-07-01	Lancet Neurol	Frontotemporal dementia and its subtypes: a genome-wide association study.	Frontotemporal dementia	1,377 European ancestry behavioural variant cases, 308 European ancestry Semantic dementia cases, 269 European ancestry Progressive nonfluent aphasia cases, 200 European ancestry Frontotremporal dementia with motor neuron disease cases, up to 4,308 European ancestry controls	690 European ancestry behavioural variant cases, 190 European ancestry Semantic dementia cases, 221 European ancestry Progressive nonfluent aphasia cases, 94 European ancestry Frontotremporal dementia with motor neuron disease cases, 177 European ancestry Frontotemporal lobar degeneration cases, up to 5,094 European ancestry controls	6p21.32	HLA-DRA, HLA-DRB5, BTNL2	rs9268856-C	0.748	6E-9	(All Frontotemporal dementia)	1.24	[1.16-1.32]	Illumina [6026385] (imputed)	N
613	chr6_ssto_hap7	3777947	3777948	rs9268877	29905830	Lee HS	2018-08-01	J Crohns Colitis	An Intergenic Variant rs9268877 Between HLA-DRA and HLA-DRB Contributes to the Clinical Course and Long-term Outcome of Ulcerative Colitis.	Poor prognosis in Crohn's disease	243 Korean ancestry poor prognosis cases, 364 Korean ancestry good prognosis controls	145 Korean ancestry poor prognosis cases, 129 Korean ancestry good prognosis controls	6p21.32	NA	rs9268877-A	0.35	1E-8		1.72	[1.43-2.07]	Illumina [up to 519662]	N
613	chr6_ssto_hap7	3777947	3777948	rs9268877	19915572	Barrett JC	2009-11-15	Nat Genet	Genome-wide association study of ulcerative colitis identifies three new susceptibility loci, including the HNF4A region.	Ulcerative colitis	2,361 European ancestry cases, 5,417 European ancestry controls	2,321 European ancestry cases, 4,818 European ancestry controls	6p21.32	MHC	rs9268877-?	NR	4E-23				Affymetrix [NR]	N
613	chr6_ssto_hap7	3777947	3777948	rs9268877	18836448	Franke A	2008-10-05	Nat Genet	Sequence variants in IL10, ARPC2 and multiple other loci contribute to ulcerative colitis susceptibility.	Ulcerative colitis	1,167 European ancestry cases, 777 European ancestry controls	1,855 European ancestry cases, 3,091 European ancestry controls	6p21.32	HLA-DRA, BTNL2	rs9268877-T	0.45	6E-18		1.45	[1.33-1.58]	Affymetrix [355262]	N
613	chr6_ssto_hap7	3778768	3778769	rs9268896	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs9268896-A	0.232	3E-20	(Complement C4, C4A.C4B.4481.34.2)	0.28	[0.22-0.34] unit decrease	Affymetrix [10572788] (imputed)	N
613	chr6_ssto_hap7	3778880	3778881	rs9268905	28041642	Carmona FD	2016-12-29	Am J Hum Genet	A Genome-wide Association Study Identifies Risk Alleles in Plasminogen and P4HA2 Associated with Giant Cell Arteritis.	Giant cell arteritis	2,134 European ancestry cases, 9,125 European ancestry controls	NA	6p21.32	HLA-DRA, HLA-DRB1	rs9268905-?	0.37	2E-54		1.79	[1.67-1.93]	Illumina [1844133] (imputed)	N
613	chr6_ssto_hap7	3778880	3778881	rs9268905	21602797	Wright FA	2011-05-22	Nat Genet	Genome-wide association and linkage identify modifier loci of lung disease severity in cystic fibrosis at 11p13 and 20q13.2.	Cystic fibrosis severity	2,317 European ancestry cases, 177 cases	898 European ancestry sibling pair cases, 75 sibling pair cases	6p21.32	HLA-DRA	rs9268905-C	0.32	1E-7				Illumina [~ 2609000] (imputed)	N
613	chr6_ssto_hap7	3779303	3779304	rs78218185	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Asthma	13,015 East Asian ancestry cases, 162,933 East Asian ancestry controls	NA	6p21.32		rs78218185-A	0.135952394	4E-43		0.27918372	[0.24-0.32] unit increase	Illumina [13429513] (imputed)	N
613	chr6_ssto_hap7	3779638	3779639	rs9268923	26819262	Zhou Y	2016-01-27	Mult Scler	Genetic loci for Epstein-Barr virus nuclear antigen-1 are associated with risk of multiple sclerosis.	Epstein Barr virus nuclear antigen 1 IgG levels	1,243 parents and up to 2,356 children from 992 families, 1,956 Mexican American individuals		6p21.32	HLA-DRB5, HLA-DQA1, HLA-DRA, HLA-DRB1	rs9268923-C	0.552	1E-11	(non-Mexican American parents and children)	0.18	unit increase	Illumina [up to 2428201] (imputed)	N
613	chr6_ssto_hap7	3779638	3779639	rs9268923	26819262	Zhou Y	2016-01-27	Mult Scler	Genetic loci for Epstein-Barr virus nuclear antigen-1 are associated with risk of multiple sclerosis.	Epstein Barr virus nuclear antigen 1 IgG levels	1,243 parents and up to 2,356 children from 992 families, 1,956 Mexican American individuals		6p21.32	HLA-DRA, HLA-DRB5, HLA-DQA1, HLA-DRB1	rs9268923-C	0.552	1E-13	(non-Mexican American parents)	0.252	unit increase	Illumina [up to 2428201] (imputed)	N
613	chr6_ssto_hap7	3779638	3779639	rs9268923	26819262	Zhou Y	2016-01-27	Mult Scler	Genetic loci for Epstein-Barr virus nuclear antigen-1 are associated with risk of multiple sclerosis.	Epstein Barr virus nuclear antigen 1 IgG levels	1,243 parents and up to 2,356 children from 992 families, 1,956 Mexican American individuals		6p21.32	HLA-DRA, HLA-DRB5, HLA-DQA1, HLA-DRB1	rs9268923-C	0.552	1E-11	(non-Mexican American sero-positive children)	0.225	unit increase	Illumina [up to 2428201] (imputed)	N
613	chr6_ssto_hap7	3779638	3779639	rs9268923	20228798	Franke A	2010-03-14	Nat Genet	Genome-wide association study for ulcerative colitis identifies risk loci at 7q22 and 22q13 (IL17REL).	Ulcerative colitis	1,043 European ancestry cases, 1,703 European ancestry controls	2,539 European ancestry cases, 5,428 European ancestry controls	6p21.32	HLA-DRA	rs9268923-C	0.67	4E-15		1.45	[1.33-1.59]	Affymetrix [1897764] (imputed)	N
613	chr6_ssto_hap7	3779772	3779773	rs9268925	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	6p21.32	Intergenic	rs9268925-C	NR	1E-23		0.0788801	[0.063-0.094] unit increase	Illumina [13520550] (imputed)	N
613	chr6_ssto_hap7	3779861	3779862	rs9469120	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Yeast infection	52,218 European ancestry cases, 10,235 European ancestry controls	NA	6p21.32	NR	rs9469120-?	NR	9E-8		0.0846	[0.054-0.116] unit decrease	Illumina [at least 560000] (imputed)	N
613	chr6_ssto_hap7	3779929	3779930	rs113585425	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs113585425-C	0.19	4E-8		4.04	[3.10-5.28]	Illumina [NR] (imputed)	N
613	chr6_ssto_hap7	3779971	3779972	rs2395185	25186300	Terao C	2014-09-03	Arthritis Rheumatol	Association between antinuclear antibodies and the HLA class II locus and heterogeneous characteristics of staining patterns: the Nagahama study.	Antinuclear antibody levels	3,185 Japanese ancestry individuals	3,963 Japanese ancestry individuals	6p21.32	HLA-DRA, HLA-DRB5	rs2395185-?	NR	1E-11		0.25	unit increase	Illumina [303506]	N
613	chr6_ssto_hap7	3779971	3779972	rs2395185	23143601	Lan Q	2012-11-11	Nat Genet	Genome-wide association analysis identifies new lung cancer susceptibility loci in never-smoking women in Asia.	Lung cancer	5,510 East Asian ancestry cases, 4,544 East Asian ancestry controls	1,099 East Asian ancestry cases, 2,913 East Asian ancestry controls	6p21.32	HLA class II	rs2395185-T	0.35	1E-8		1.17	[1.11-1.23]	Illumina [596032]	N
613	chr6_ssto_hap7	3779971	3779972	rs2395185	22286212	Urayama KY	2012-01-27	J Natl Cancer Inst	Genome-wide association study of classical Hodgkin lymphoma and Epstein-Barr virus status-defined subgroups.	Hodgkin's lymphoma	1,200 European ancestry cases, 6,417 European ancestry controls	563 European ancestry cases, 613 European ancestry controls	6p21.32	HLA-DRA	rs2395185-?	NR	4E-31	(Total cHL)	1.82	[1.67-2.00]	Illumina [502514]	N
613	chr6_ssto_hap7	3779971	3779972	rs2395185	20228799	McGovern DP	2010-03-14	Nat Genet	Genome-wide association identifies multiple ulcerative colitis susceptibility loci.	Ulcerative colitis	2,693 European ancestry cases, 6,791 European ancestry controls	2,009 European ancestry cases, 1,580 European ancestry controls	6p21.32	C6orf10, BTNL2, HLA	rs2395185-G	NR	9E-23		1.49	[NR]	Illumina [266047]	N
613	chr6_ssto_hap7	3779971	3779972	rs2395185	19915573	Asano K	2009-11-15	Nat Genet	A genome-wide association study identifies three new susceptibility loci for ulcerative colitis in the Japanese population.	Ulcerative colitis	376 Japanese ancestry cases, 934 Japanese ancestry controls	376 Japanese ancestry cases, 1,097 Japanese ancestry controls	6p21.32	intergenic	rs2395185-G	0.61	5E-22		1.92	[1.68-2.19]	Illumina [513923]	N
613	chr6_ssto_hap7	3779971	3779972	rs2395185	19122664	Silverberg MS	2009-01-04	Nat Genet	Ulcerative colitis-risk loci on chromosomes 1p36 and 12q15 found by genome-wide association study.	Ulcerative colitis	1,022 European ancestry cases, 2,503 European ancestry controls	1,387 European ancestry cases, 1,115 European ancestry controls	6p21.32	HLA-DQB1, HLA-DRA, BTNL2, HLA-DRB5, HLA-DRB1, HLA-DQA1	rs2395185-?	0.67	1E-16		1.52		Illumina [280748]	N
613	chr6_ssto_hap7	3780080	3780081	rs2894257	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p21.32	HLA-DRADQA2	rs2894257-C	0.53	8E-36		1.36	[1.33-1.39]	Illumina [at least 560000] (imputed)	N
613	chr6_ssto_hap7	3780122	3780123	rs2395190	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic sinusitis	4,617 East Asian ancestry cases, 152,226 East Asian ancestry controls	NA	6p21.32		rs2395190-T	0.301110024	1E-29		0.26669198	[0.22-0.31] unit decrease	Illumina [13426486] (imputed)	N
613	chr6_ssto_hap7	3780550	3780551	rs9268948	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DRB9	rs9268948-G	NR	2E-9		0.0189254	[0.013-0.025] unit decrease	Affymetrix [319769] (imputed)	N
613	chr6_ssto_hap7	3780550	3780551	rs9268948	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DRB9	rs9268948-G	NR	2E-9		0.0190762	[0.013-0.025] unit decrease	Affymetrix [319769] (imputed)	N
613	chr6_ssto_hap7	3780563	3780564	rs35880697	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	6p21.32	NR	rs35880697-?	NR	7E-10				Affymetrix [~ 8270000] (imputed)	N
613	chr6_ssto_hap7	3782142	3782143	rs4947340	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	6p21.32	HLA-DRB9	rs4947340-T	0.40103	1E-52		0.0369333	[0.032-0.042] unit decrease	Affymetrix [93095623] (imputed)	N
613	chr6_ssto_hap7	3782155	3782156	rs4947257	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p21.32	NR	rs4947257-?	NR	1E-12		0.0988	[0.071-0.126] unit decrease	Illumina [at least 560000] (imputed)	N
613	chr6_ssto_hap7	3782350	3782351	rs9268989	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs9268989-A	0.378	6E-14		0.856	[0.81-0.9]	Illumina [11270530] (imputed)	N
613	chr6_ssto_hap7	3783040	3783041	rs9391782	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	6p21.32		rs9391782-C	0.36641	1E-6		0.033747	[0.02-0.047] unit increase	Affymetrix [15580782] (imputed)	N
613	chr6_ssto_hap7	3784322	3784323	rs9269029	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs9269029-A	0.176	2E-8		0.866	[0.82-0.92]	Illumina [11270530] (imputed)	N
613	chr6_ssto_hap7	3784392	3784393	rs9405038	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	High density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	6p21.32	HLA-DRA, HLA-DRB5	rs9405038-?		1E-13		0.0366	[0.027-0.046] unit decrease	Illumina [31500000] (imputed)	N
613	chr6_ssto_hap7	3785021	3785022	rs9269041	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on Dendritic Cell	2,871 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9269041-A	0.60762	1E-9		0.2062	[0.14-0.27] unit decrease	Illumina [17926566] (imputed)	N
613	chr6_ssto_hap7	3787100	3787102	rs145954018	30674883	Jin Y	2019-01-23	Nat Commun	Early-onset autoimmune vitiligo associated with an enhancer variant haplotype that upregulates class II HLA expression.	Vitiligo (early onset)	704 European ancestry cases, 9,031 European ancestry controls	375 European ancestry cases, 1,455 European ancestry controls	6p21.32	NR	rs145954018-?	NR	3E-54		4.62	[4.42-4.82]	NR [up to 494043] (imputed)	N
613	chr6_ssto_hap7	3787522	3787523	rs9357149	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.32		rs9357149-C	0.982	4E-24				Affymetrix [10369434] (imputed)	N
613	chr6_ssto_hap7	3787748	3787749	rs9269080	30578877	Dahlin A	2018-12-19	J Allergy Clin Immunol	Large-scale, multi-ethnic genome-wide association study identifies novel loci contributing to asthma susceptibility in adults.	Adult asthma	16,274 European ancestry cases, 38,269 European ancestry controls	10,365 European ancestry cases, 16,110 European ancestry controls, cases and controls (see Moffatt et al 2010)	6p21.32	HLA-DRB9	rs9269080-?	NR	1E-8		1.098901	[1.05-1.11]	Affymetrix [7230512] (imputed)	N
613	chr6_ssto_hap7	3787879	3787880	rs9269081	29196614	Sud A	2017-12-01	Nat Commun	Genome-wide association study of classical Hodgkin lymphoma identifies key regulators of disease susceptibility.	Nodular sclerosis Hodgkin lymphoma	1,278 European ancestry cases, 14,325 European ancestry controls	1,586 cases, 3,069 controls	6p21.32	HLA-DRA	rs9269081-?	NR	2E-39		1.82	[1.67-2.00]	Illumina [> 10000000] (imputed)	N
613	chr6_ssto_hap7	3788478	3788479	rs2071805	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Osteoporosis	8,520 European ancestry cases, 479,981 European ancestry controls, 9,794 East Asian ancestry cases, 168,932 East Asian ancestry controls	NA	6p21.32		rs2071805-T	NR	9E-10		0.144	[0.098-0.19] unit decrease	Affymetrix, Illumina [25844994] (imputed)	N
613	chr6_ssto_hap7	3788901	3788902	rs34452045	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs34452045-G	0.145	3E-31		0.694	[0.63-0.75]	Illumina [11270530] (imputed)	N
613	chr6_ssto_hap7	3790004	3790005	rs9269108	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	6p21.32	NR	rs9269108-?	NR	3E-6		4.641	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
613	chr6_ssto_hap7	3790047	3790048	rs9269109	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8+ Natural Killer T Absolute Count	3,652 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9269109-C	0.36376	3E-8		0.1671	[0.11-0.23] unit increase	Illumina [18427348] (imputed)	N
613	chr6_ssto_hap7	3790047	3790048	rs9269109	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28- CD25++ CD8+ T cell Absolute Count	3,130 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9269109-C	0.35879	1E-8		0.1597	[0.11-0.21] unit increase	Illumina [18189521] (imputed)	N
613	chr6_ssto_hap7	3790580	3790581	rs28895243	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	6p21.32	HLA-DRB9	rs28895243-G	0.039859	5E-20		0.05294043	[0.042-0.064] unit decrease	Affymetrix [93095623] (imputed)	N
613	chr6_ssto_hap7	3790849	3790850	rs116353692	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (adrenergics, inhalants)	5,880 East Asian ancestry cases, 172,846 East Asian ancestry controls	NA	6p21.32		rs116353692-C	0.139167381	2E-13		0.21394032	[0.16-0.27] unit increase	Illumina [13429980] (imputed)	N
613	chr6_ssto_hap7	3790979	3790980	rs12194148	21156761	Padyukov L	2010-12-14	Ann Rheum Dis	A genome-wide association study suggests contrasting associations in ACPA-positive versus ACPA-negative rheumatoid arthritis.	Rheumatoid arthritis	1,147 European ancestry ACPA positive RA cases, 774 European ancestry ACPA negative RA cases, 1,079 European ancestry controls	887 European ancestry ACPA positive RA cases, 1,218 European ancestry controls	6p21.32	HLA	rs12194148-?	NR	5E-58	(ACPA-positive RA vs controls)			Illumina [1723056] (imputed)	N
613	chr6_ssto_hap7	3791331	3791332	rs12195582	25279986	Skibola CF	2014-10-02	Am J Hum Genet	Genome-wide association study identifies five susceptibility loci for follicular lymphoma outside the HLA region.	Follicular lymphoma	2,728 European ancestry cases, 7,758 European ancestry controls	1,795 European ancestry cases, 5,586 European ancestry controls	6p21.32	HLA	rs12195582-T	0.465	5E-100		1.78	[1.69-1.88]	Illumina [up to 21554489]	N
613	chr6_ssto_hap7	3791931	3791932	rs9269136	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DRB9	rs9269136-G	NR	1E-11		0.0239787	[0.017-0.031] unit decrease	Affymetrix [321169] (imputed)	N
613	chr6_ssto_hap7	3792175	3792180	rs200093869	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Iron deficiency anemia	12,317 European ancestry cases, 468,624 European ancestry controls, 4,618 East Asian ancestry cases, 174,057 East Asian ancestry controls	NA	6p21.32		rs200093869-C	NR	1E-12		0.1142	[0.083-0.146] unit increase	Affymetrix, Illumina [25844780] (imputed)	N
613	chr6_ssto_hap7	3792282	3792283	rs9269143	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DRB9	rs9269143-T	NR	2E-9		0.0207074	[0.014-0.027] unit decrease	Affymetrix [319769] (imputed)	N
613	chr6_ssto_hap7	3792282	3792283	rs9269143	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DRB9	rs9269143-T	NR	1E-8		0.0198652	[0.013-0.027] unit decrease	Affymetrix [319769] (imputed)	N
613	chr6_ssto_hap7	3792474	3792475	rs9378212	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	6p21.32	NR	rs9378212-T	0.469078	7E-211		0.059685	[0.056-0.063] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
613	chr6_ssto_hap7	3792474	3792475	rs9378212	27286809	Ligthart S	2016-06-10	BMC Genomics	Bivariate genome-wide association study identifies novel pleiotropic loci for lipids and inflammation.	C-reactive protein levels or HDL-cholesterol levels (pleiotropy)	65,000 individuals (C-reactive protein), 99,900 individuals (HDL-cholesterol)	NA	6p21.32	HLA-DRA	rs9378212-T	NR	7E-10				NR [2501543] (imputed)	N
613	chr6_ssto_hap7	3792699	3792700	rs28895267	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.32		rs28895267-C	0.518	1E-110				Affymetrix [10369434] (imputed)	N
613	chr6_ssto_hap7	3792699	3792700	rs28895267	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DRB9	rs28895267-T	NR	9E-16		0.0253192	[0.019-0.031] unit increase	Affymetrix [323858] (imputed)	N
613	chr6_ssto_hap7	3792699	3792700	rs28895267	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	HLA-DRB9	rs28895267-T	NR	4E-15		0.0247032	[0.019-0.031] unit increase	Affymetrix [127266] (imputed)	N
613	chr6_ssto_hap7	3792775	3792776	rs17209866	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p21.32	NR	rs17209866-A	0.453955	2E-344				Affymetrix, Illumina [24649327] (imputed)	N
613	chr6_ssto_hap7	3793239	3793240	rs17203563	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28- CD127- CD25++ CD8+ T cell Absolute Count	3,130 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs17203563-A	0.26383	5E-8		0.1789	[0.11-0.24] unit increase	Illumina [18189521] (imputed)	N
613	chr6_ssto_hap7	3793497	3793498	rs7453498	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Dementia and core Alzheimer's disease neuropathologic changes	up to 3,887 cases, up to 1,027 controls	NA	6p21.32	intergenic	rs7453498-C	0.8656	3E-6	(Complete)	0.8142	[0.47-1.16] unit increase	Affymetrix, Illumina [NR] (imputed)	N
613	chr6_ssto_hap7	3793865	3793866	rs2395191	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic obstructive pulmonary disease	13,530 European ancestry cases, 454,945 European ancestry controls, 4,017 East Asian ancestry cases, 162,653 East Asian ancestry controls	NA	6p21.32		rs2395191-C	NR	9E-10		0.077	[0.052-0.102] unit increase	Affymetrix, Illumina [25843162] (imputed)	N
613	chr6_ssto_hap7	3793865	3793866	rs2395191	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8 on Natural Killer T	3,103 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs2395191-C	0.36584	2E-9		0.1751	[0.12-0.23] unit increase	Illumina [18027570] (imputed)	N
613	chr6_ssto_hap7	3793865	3793866	rs2395191	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs2395191-C	NR	6E-10		1.1764705	[1.12-1.24]	Affymetrix [7846216] (imputed)	N
613	chr6_ssto_hap7	3794423	3794424	rs2395192	33204752	Butler-Laporte G	2020-09-24	Open Forum Infect Dis	Genetic Determinants of Antibody-Mediated Immune Responses to Infectious Diseases Agents: A Genome-Wide and HLA Association Study.	Epstein-Barr virus EA-D antibody levels	7,763 White British ancestry individuals	NA	6p21.32	HLA-DRB9	rs2395192-C	0.440	3E-16		0.13	[0.099-0.161] unit decrease	NR [25472218] (imputed)	N
613	chr6_ssto_hap7	3794423	3794424	rs2395192	31102405	Labreche K	2019-05-17	Neuro Oncol	A genome-wide association study identifies susceptibility loci for primary central nervous system lymphoma at 6p25.3 and 3p22.1: a LOC network study.	Primary central nervous system lymphoma	475 European ancestry cases, 1,134 European ancestry controls	NA	6p21.32	HLA-DRA	rs2395192-C	0.59	2E-7		1.51	[1.29-1.76]	Illumina [> 10000000] (imputed)	N
614	chr6_ssto_hap7	3801812	3801813	rs113103322	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on plasmacytoid Dendritic Cell	2,872 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs113103322-A	0.11666	2E-27		0.5638	[0.46-0.66] unit increase	Illumina [17926607] (imputed)	N
614	chr6_ssto_hap7	3801934	3801935	rs28437337	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	6p21.32		rs28437337-T	0.36183	6E-8		0.038474	[0.025-0.052] unit increase	Affymetrix [15580782] (imputed)	N
614	chr6_ssto_hap7	3802207	3802208	rs78279385	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	CAG-180 sp000432435 abundance in stool	5,959 Finnish ancestry individuals	NA	6p21.32		rs78279385-A	0.255984	3E-8		0.158067	[0.1-0.21] unit increase	Illumina [7980478] (imputed)	N
614	chr6_ssto_hap7	3802207	3802208	rs78279385	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	74,970 East Asian ancestry individuals	NA	6p21.32		rs78279385-A	0.478006	1E-14		0.0379801	[0.028-0.048] unit increase	Illumina [13465896] (imputed)	N
614	chr6_ssto_hap7	3802211	3802212	rs9269233	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs9269233-A	0.23	3E-11		1.17	[1.12-1.22]	Illumina [11270530] (imputed)	N
614	chr6_ssto_hap7	3802237	3802238	rs9269234	28118524	Saxena R	2017-01-24	Arthritis Rheumatol	A Multinational Arab Genome-Wide Association Study Identifies New Genetic Associations for Rheumatoid Arthritis.	Rheumatoid arthritis (rheumatoid factor and/or anti-cyclic citrullinated peptide seropositive)	357 African admixed and non-African admixed Arab ancestry cases, 352 African admixed and non-African admixed Arab ancestry controls	234 Arab ancestry cases, 225 Arab ancestry controls	6p21.32	HLA-DRB1	rs9269234-G	0.65	6E-16		2.14	[1.78-2.57]	Illumina [7000653] (imputed)	N
614	chr6_ssto_hap7	3802237	3802238	rs9269234	28118524	Saxena R	2017-01-24	Arthritis Rheumatol	A Multinational Arab Genome-Wide Association Study Identifies New Genetic Associations for Rheumatoid Arthritis.	Rheumatoid arthritis	97 African admixed Arab ancestry cases, 410 non-African admixed Arab ancestry cases, 4 Arab ancestry cases, 56 African admixed Arab ancestry controls, 290 non-African admixed Arab ancestry controls, 6 Arab ancestry controls	283 Arab ancestry cases, 221 Arab ancestry controls	6p21.32	HLA-DRB1	rs9269234-G	0.65	5E-11		1.75	[1.48-2.06]	Illumina [7000653] (imputed)	N
614	chr6_ssto_hap7	3802283	3802284	rs62405562	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on naive-mature B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs62405562-G	0.45562	9E-11		0.1848	[0.13-0.24] unit increase	Illumina [18238311] (imputed)	N
614	chr6_ssto_hap7	3802283	3802284	rs62405562	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on IgD+ CD38dim B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs62405562-G	0.45562	2E-15		0.2285	[0.17-0.28] unit increase	Illumina [18238311] (imputed)	N
614	chr6_ssto_hap7	3802283	3802284	rs62405562	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on IgD+ CD24- B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs62405562-G	0.45562	1E-11		0.1942	[0.14-0.25] unit increase	Illumina [18238311] (imputed)	N
614	chr6_ssto_hap7	3802283	3802284	rs62405562	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on IgD+ B cell	3,658 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs62405562-G	0.45576	2E-11		0.1921	[0.14-0.25] unit increase	Illumina [18238340] (imputed)	N
614	chr6_ssto_hap7	3802346	3802347	rs2395201	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	6p21.32	NR	rs2395201-?	NR	6E-17	(CCL19)	0.579204	[0.44-0.71] unit increase	Illumina [11901634] (imputed)	N
614	chr6_ssto_hap7	3802393	3802394	rs2395203	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on plasmacytoid Dendritic Cell	2,872 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs2395203-G	0.0565	3E-13		0.4964	[0.36-0.63] unit increase	Illumina [17926607] (imputed)	N
614	chr6_ssto_hap7	3802567	3802568	rs1974459	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	6p21.32		rs1974459-G	0.068544	5E-19		0.040665817	[0.032-0.05] unit increase	Affymetrix [93095623] (imputed)	N
614	chr6_ssto_hap7	3802627	3802628	rs1557550	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	6p21.32		rs1557550-T	0.0574940000000001	7E-28		0.0534048	[0.044-0.063] unit increase	Affymetrix [93095623] (imputed)	N
614	chr6_ssto_hap7	3802832	3802833	rs2395209	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Receptor for advanced glycosylation end products levels	21,758 European ancestry individuals	9,173 individuals	6p21.32		rs2395209-T	0.16	1E-17		0.1071	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
614	chr6_ssto_hap7	3802895	3802896	rs28599891	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	6p21.32	intergenic	rs28599891-G	0.7051	5E-14		0.03041702	[0.023-0.038] unit increase	Affymetrix [~ 2500000] (imputed)	N
614	chr6_ssto_hap7	3803012	3803013	rs28368843	33119750	Vergara C	2020-10-29	J Infect Dis	A multi-ancestry sex stratified genome-wide association study of spontaneous clearance of hepatitis C virus.	Hepatitis C (spontaneous viral clearance)	239 African ancestry male cases, 1,184 African ancestry male controls, 206 African ancestry female cases, 572 African ancestry female controls, 489 European ancestry male cases, 703 European ancestry male controls, 212 European ancestry female cases, 332 European ancestry female controls, 91 Hispanic male cases, 197 Hispanic male controls, 82 Hispanic female cases, 116 Hispanic female controls	NA	6p21.32	NR	rs28368843-T	0.07	5E-7	(female)	2.38	[NR]	Illumina [5730693] (imputed)	N
614	chr6_ssto_hap7	3803027	3803028	rs28453249	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	HLA-DRB9	rs28453249-T	NR	2E-13		0.021088	[0.015-0.027] unit increase	Affymetrix [321114] (imputed)	N
614	chr6_ssto_hap7	3803051	3803052	rs28561769	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p21.32	NR	rs28561769-G	0.459185	3E-228				Affymetrix, Illumina [23114412] (imputed)	N
614	chr6_ssto_hap7	3803617	3803618	rs6916742	26819262	Zhou Y	2016-01-27	Mult Scler	Genetic loci for Epstein-Barr virus nuclear antigen-1 are associated with risk of multiple sclerosis.	Epstein Barr virus nuclear antigen 1 IgG levels	1,243 parents and up to 2,356 children from 992 families, 1,956 Mexican American individuals		6p21.32	HLA-DRA, HLA-DRB5, HLA-DQA1, HLA-DRB1	rs6916742-C	0.569	6E-6	(non-Mexican American children)	0.16	unit decrease	Illumina [up to 2428201] (imputed)	N
614	chr6_ssto_hap7	3803697	3803698	rs138024423	33589587	Sakaue S	2021-02-15	Nat Commun	Genetic determinants of risk in autoimmune pulmonary alveolar proteinosis.	Autoimmune pulmonary alveolar proteinosis	198 Japanese ancestry cases, 395 Japanese ancestry controls	NA	6p21.32		rs138024423-G	0.072	2E-12		5.2	[3.3-8.2]	Illumina [12153232] (imputed)	N
614	chr6_ssto_hap7	3804016	3804017	rs76733997	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DRB9	rs76733997-A	NR	3E-13		0.0290897	[0.021-0.037] unit decrease	Affymetrix [323858] (imputed)	N
614	chr6_ssto_hap7	3804280	3804281	rs112112734	31596875	Traylor M	2019-10-09	PLoS One	Genetic associations with radiological damage in rheumatoid arthritis: Meta-analysis of seven genome-wide association studies of 2,775 cases.	Joint damage in rheumatoid arthritis	2,527 European ancestry individuals, 196 African ancestry individuals, 52 individuals	NA	6p21.32	HLA-DRB5, HLA-DRB6, HLA-DRB1	rs112112734-?	NR	4E-8				Affymetrix, Illumina [4802696] (imputed)	N
614	chr6_ssto_hap7	3804280	3804281	rs112112734	31596875	Traylor M	2019-10-09	PLoS One	Genetic associations with radiological damage in rheumatoid arthritis: Meta-analysis of seven genome-wide association studies of 2,775 cases.	Joint damage in rheumatoid arthritis	2,527 European ancestry individuals	NA	6p21.32	intergenic	rs112112734-?	NR	9E-8				Affymetrix, Illumina [2723488] (imputed)	N
614	chr6_ssto_hap7	3804363	3804364	rs112062732	32723749	Kwon YC	2020-07-28	Ann Rheum Dis	Genome-wide association study in a Korean population identifies six novel susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis	4,068 Korean ancestry cases, 36,487 Korean ancestry controls	NA	6p21.32	HLA-DRB1	rs112062732-?		6E-227		2.44	[2.31-2.58]	Illumina [NR] (imputed)	N
614	chr6_ssto_hap7	3804363	3804364	rs112062732	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	6p21.32	intergenic	rs112062732-C	0.4128	3E-30		0.04384147	[0.036-0.051] unit increase	Affymetrix [~ 2500000] (imputed)	N
614	chr6_ssto_hap7	3831099	3831100	rs117317282	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.32	HLA-DRB5	rs117317282-T	0.03162	1E-12		0.058178984	[0.042-0.074] unit decrease	Affymetrix [93095623] (imputed)	N
614	chr6_ssto_hap7	3832653	3832654	rs114812317	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.32	HLA-DRB5, HLA-DRB6	rs114812317-?		3E-10		1.1363636	[1.09-1.18]	Affymetrix, Illumina [NR]	N
614	chr6_ssto_hap7	3832833	3832834	rs11967891	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	6p21.32	HLA-DRB5	rs11967891-A	0.816158	7E-30		0.0293508	[0.024-0.034] unit increase	Affymetrix [NR] (imputed)	N
614	chr6_ssto_hap7	3833016	3833017	rs2157337	21156761	Padyukov L	2010-12-14	Ann Rheum Dis	A genome-wide association study suggests contrasting associations in ACPA-positive versus ACPA-negative rheumatoid arthritis.	Rheumatoid arthritis	1,147 European ancestry ACPA positive RA cases, 774 European ancestry ACPA negative RA cases, 1,079 European ancestry controls	887 European ancestry ACPA positive RA cases, 1,218 European ancestry controls	6p21.32	HLA	rs2157337-?	NR	9E-52	(ACPA-positive RA vs ACPA-negative RA)			Illumina [1723056] (imputed)	N
614	chr6_ssto_hap7	3833117	3833118	rs112621731	34011352	Schwarm C	2021-05-19	Orphanet J Rare Dis	Identification of two novel bullous pemphigoid- associated alleles, HLA-DQA1*05:05 and -DRB1*07:01, in Germans.	Bullous pemphigoid	438 German cases, 417 German controls	NA	6p21.32	HLA-DRB5, HLA-DRB6	rs112621731-?	NR	6E-8		0.708733	[0.45-0.96] unit increase	Affymetrix [up to 386296] (imputed)	N
614	chr6_ssto_hap7	3833219	3833220	rs67851010	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	TCRgd T cell Absolute Count	3,650 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs67851010-A	0.77135	2E-11		0.3066	[0.22-0.4] unit increase	Illumina [18427099] (imputed)	N
614	chr6_ssto_hap7	3833265	3833266	rs72851020	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Naive CD8+ T cell Absolute Count	3,395 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs72851020-T	0.76839	4E-10		0.2077	[0.14-0.27] unit increase	Illumina [18332267] (imputed)	N
614	chr6_ssto_hap7	3833499	3833500	rs115780495	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	SSC-A on myeloid Dendritic Cell	2,872 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs115780495-G	0.20794	4E-10		0.34	[0.23-0.45] unit increase	Illumina [17926605] (imputed)	N
614	chr6_ssto_hap7	3833587	3833588	rs33997707	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	6p21.32		rs33997707-A	NR	1E-36		0.0422	[0.036-0.049] unit increase	Affymetrix, Illumina [20521447] (imputed)	N
614	chr6_ssto_hap7	3834189	3834190	rs78533241	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DRB5	rs78533241-A	NR	2E-18		0.0263079	[0.02-0.032] unit decrease	Affymetrix [323123] (imputed)	N
614	chr6_ssto_hap7	3834271	3834272	rs7747236	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	6p21.32	HLA-DRB5	rs7747236-T	0.136236	2E-9		0.032500744	[0.022-0.043] unit increase	Affymetrix [93095623] (imputed)	N
614	chr6_ssto_hap7	3835075	3835076	rs68174286	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR+ T cell Absolute Count	3,580 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs68174286-T	0.3045	7E-13		0.3263	[0.24-0.41] unit increase	Illumina [18377392] (imputed)	N
614	chr6_ssto_hap7	3835712	3835713	rs541803504	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs541803504-T	0.176	4E-26	(Complement C4, C4A.C4B.4481.34.2)	0.38	[0.3-0.46] unit increase	Affymetrix [10572788] (imputed)	N
614	chr6_ssto_hap7	3841629	3841630	rs72492309	30898391	Lawrenson K	2019-03-19	Gynecol Oncol	Genome-wide association studies identify susceptibility loci for epithelial ovarian cancer in east Asian women.	Epithelial ovarian cancer	3,238 East Asian ancestry cases, 4,083 East Asian ancestry controls	NA	6p21.32		rs72492309-?	NR	2E-6	(serous)	1.27		Illumina [11595112] (imputed)	N
614	chr6_ssto_hap7	3842090	3842091	rs182908437	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.32	intergenic	rs182908437-?		3E-11		1.1494253	[1.1-1.2]	Affymetrix, Illumina [NR]	N
614	chr6_ssto_hap7	3843694	3843695	rs28584364	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4 on naive CD4+ T cell	2,910 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs28584364-T	0.57221	1E-8		0.3238	[0.21-0.44] unit increase	Illumina [17945511] (imputed)	N
614	chr6_ssto_hap7	3843694	3843695	rs28584364	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4 on Central Memory CD4+ T cell	2,912 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs28584364-T	0.57218	3E-10		0.3333	[0.23-0.44] unit increase	Illumina [17945888] (imputed)	N
614	chr6_ssto_hap7	3843694	3843695	rs28584364	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4 on CD45RA+ CD4+ T cell	2,911 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs28584364-T	0.57219	2E-11		0.3526	[0.25-0.46] unit increase	Illumina [17945546] (imputed)	N
614	chr6_ssto_hap7	3843694	3843695	rs28584364	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4 on CD4+ T cell	2,912 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs28584364-T	0.57218	5E-12		0.3639	[0.26-0.47] unit increase	Illumina [17945888] (imputed)	N
614	chr6_ssto_hap7	3843788	3843789	rs562852671	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	RNU1-61P	rs562852671-T	NR	2E-11		0.0215915	[0.015-0.028] unit decrease	Affymetrix [323858] (imputed)	N
614	chr6_ssto_hap7	3843788	3843789	rs562852671	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	RNU1-61P	rs562852671-T	NR	2E-11		0.0216706	[0.015-0.028] unit decrease	Affymetrix [127266] (imputed)	N
614	chr6_ssto_hap7	3846979	3846980	rs111945767	26562150	Seldin MF	2015-10-10	Mol Med	Genome-wide Association Study of Late-Onset Myasthenia Gravis: Confirmation of TNFRSF11A, and Identification of ZBTB10 and Three Distinct HLA Associations.	Late-onset myasthenia gravis	532 European ancestry cases, 2,128 European ancestry controls	NA	6p21.32	MHC_Class II	rs111945767-G	0.38	3E-17		1.923077	[1.64-2.27]	Illumina [6175472] (imputed)	N
614	chr6_ssto_hap7	3848367	3848368	rs138453460	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	6p21.32		rs138453460-G	0.942891	1E-8		0.0549043	[0.036-0.074] unit increase	NR [11722792] (imputed)	N
614	chr6_ssto_hap7	3848942	3848943	rs28490179	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	RNU1-61P	rs28490179-C	NR	1E-9		0.0229135	[0.016-0.03] unit increase	Affymetrix [321016] (imputed)	N
614	chr6_ssto_hap7	3850820	3850821	rs3828840	23472185	Mero IL	2013-03-05	PLoS One	Oligoclonal band status in Scandinavian multiple sclerosis patients is associated with specific genetic risk alleles.	Multiple sclerosis (OCB status)	1,367 European ancestry OCB positive cases, 161 European ancestry OCB negative cases, 428 European ancestry controls	NA	6p21.32	HLA-DRB1	rs3828840-?	NR	5E-15	(OCB positive vs. controls)	1.94	[1.64-2.29]	Illumina [495970]	N
614	chr6_ssto_hap7	3852051	3852052	rs35467127	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DRB6	rs35467127-T	NR	1E-13		0.0263989	[0.019-0.033] unit increase	Affymetrix [319769] (imputed)	N
614	chr6_ssto_hap7	3852051	3852052	rs35467127	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DRB6	rs35467127-T	NR	2E-13		0.0262282	[0.019-0.033] unit increase	Affymetrix [319769] (imputed)	N
614	chr6_ssto_hap7	3852051	3852052	rs35467127	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DRB6	rs35467127-T	NR	1E-10		0.0232493	[0.016-0.03] unit increase	Affymetrix [321169] (imputed)	N
614	chr6_ssto_hap7	3852051	3852052	rs35467127	33549134	Adolphe C	2021-02-06	Genome Med	Genetic and functional interaction network analysis reveals global enrichment of regulatory T cell genes influencing basal cell carcinoma susceptibility.	Basal cell carcinoma	17,416 European ancestry cases, 375,455 European ancestry controls	NA	6p21.32	HLA-DRB6	rs35467127-T	0.190482	7E-12		0.09424036	[0.067-0.121] unit increase	Affymetrix [7260263] (imputed)	N
614	chr6_ssto_hap7	3854737	3854738	rs144660248	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.32	HLA-DRB1, HLA-DRB5, HLA-DRB6	rs144660248-?		6E-13		1.1764705	[1.12-1.23]	Affymetrix, Illumina [NR]	N
614	chr6_ssto_hap7	3912459	3912460	rs9406351	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Neuritic plaque	up to 4,232 individuals	NA		intergenic	rs9406351-G	0.9433	3E-6	(Ordinal)	0.8443	[0.49-1.2] unit increase	Affymetrix, Illumina [NR] (imputed)	N
615	chr6_ssto_hap7	3996026	3996027	rs28366255	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs28366255-T	0.284	1E-14	(Complement C4, C4A.C4B.4481.34.2)	0.24	[0.18-0.3] unit increase	Affymetrix [10572788] (imputed)	N
615	chr6_ssto_hap7	3996217	3996218	rs34434863	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	6p21.32		rs34434863-G	NR	2E-30		0.0254	[0.021-0.03] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
615	chr6_ssto_hap7	3996297	3996298	rs28366266	29903748	Debiec H	2018-06-14	J Am Soc Nephrol	Transethnic, Genome-Wide Analysis Reveals Immune-Related Risk Alleles and Phenotypic Correlates in Pediatric Steroid-Sensitive Nephrotic Syndrome.	Childhood steroid-sensitive nephrotic syndrome	244 European ancestry cases, 2,552 European ancestry controls, 56 African cases, 454 African controls, 85 Maghrebian cases, 261 Maghrebian controls	NA	6p21.32	HLA-DRB1	rs28366266-C	0.17	4E-20		3.03	[2.40-3.85]	Illumina [at least 7529344] (imputed)	N
615	chr6_ssto_hap7	3996297	3996298	rs28366266	29903748	Debiec H	2018-06-14	J Am Soc Nephrol	Transethnic, Genome-Wide Analysis Reveals Immune-Related Risk Alleles and Phenotypic Correlates in Pediatric Steroid-Sensitive Nephrotic Syndrome.	Childhood steroid-sensitive nephrotic syndrome	132 European ancestry cases, 2,000 European ancestry controls	NA	6p21.32	HLA-DRB1	rs28366266-?	0.17	6E-6		2.25	[1.59-3.2]	Illumina [at least 7529344] (imputed)	N
615	chr6_ssto_hap7	3996308	3996309	rs9270539	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	Systemic lupus erythematosus	1,639 East Asian ancestry cases, 2,410 East Asian ancestry controls	NA			rs9270539-C	NR	4E-36		0.5741	[0.48-0.66] unit decrease	Illumina [NR] (imputed)	N
615	chr6_ssto_hap7	3996817	3996818	rs28366282	33766948	Zhu Z	2021-03-25	Eur Respir J	A large-scale genome-wide association analysis of lung function in the Chinese population identifies novel loci and highlights shared genetic etiology with obesity.	Lung function (FVC)	100,285 Chinese ancestry individuals	NA	6p21.32		rs28366282-C	0.76	3E-11		0.035	[0.025-0.045] L increase	Affymetrix [NR] (imputed)	N
615	chr6_ssto_hap7	3997011	3997012	rs34415150	33510174	Jones G	2021-01-28	Nat Commun	Genome-wide meta-analysis of muscle weakness identifies 15 susceptibility loci in older men and women.	Low hand grip strength (60 years and older) (FNIH)	20,335 European ancestry cases, 236,188 European ancestry controls	NA	6p21.32	HLA-DRB1	rs34415150-G	0.18	6E-16		0.1158	unit increase	Affymetrix, Illumina [9465622] (imputed)	N
615	chr6_ssto_hap7	3997011	3997012	rs34415150	33510174	Jones G	2021-01-28	Nat Commun	Genome-wide meta-analysis of muscle weakness identifies 15 susceptibility loci in older men and women.	Low hand grip strength (60 years and older) (EWGSOP)	48,596 European ancestry cases, 207,927 European ancestry controls	NA	6p21.32	HLA-DRB1	rs34415150-A	0.822	4E-17		0.0833	[0.064-0.103] unit decrease	Affymetrix, Illumina [9457422] (imputed)	N
615	chr6_ssto_hap7	3997011	3997012	rs34415150	33510174	Jones G	2021-01-28	Nat Commun	Genome-wide meta-analysis of muscle weakness identifies 15 susceptibility loci in older men and women.	Low hand grip strength (60 years and older) (EWGSOP)	34,589 European ancestry female cases, 100,879 European ancestry female controls	NA	6p21.32	HLA-DRB1	rs34415150-G	0.18	1E-16		0.1001	unit increase	Affymetrix, Illumina [9449805] (imputed)	N
615	chr6_ssto_hap7	3997011	3997012	rs34415150	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	6p21.32	NR	rs34415150-A	0.815874	2E-52		0.0399601	[0.035-0.045] unit decrease	NR [NR]	N
615	chr6_ssto_hap7	3997164	3997165	rs35118762	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (immunosuppressants)	3,954 European ancestry cases, 268,648 European ancestry controls, 3,483 East Asian ancestry cases, 175,243 East Asian ancestry controls	NA	6p21.32		rs35118762-T	NR	1E-120		0.4878	[0.45-0.53] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
615	chr6_ssto_hap7	3997285	3997286	rs7768875	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on IgD+ CD38+ B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs7768875-T	0.47719	3E-8		0.1706	[0.11-0.23] unit decrease	Illumina [18238311] (imputed)	N
615	chr6_ssto_hap7	3997304	3997305	rs2760975	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	6p21.32	HLA-DRB1	rs2760975-A	0.168	5E-12		0.003	[0.0022-0.0038] unit decrease	Affymetrix [15275733] (imputed)	N
615	chr6_ssto_hap7	3997304	3997305	rs2760975	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	223,215 British ancestry individuals	111,610 British ancestry individuals	6p21.32	HLA-DRB1	rs2760975-A	0.17	1E-9		0.003	[0.002-0.004] unit decrease	Affymetrix [15275733] (imputed)	N
615	chr6_ssto_hap7	3997362	3997363	rs28366297	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	6p21.32		rs28366297-C	0.30822	1E-6		0.035757	[0.021-0.05] unit increase	Affymetrix [15580782] (imputed)	N
615	chr6_ssto_hap7	3997403	3997404	rs28366299	33143745	Andlauer TFM	2020-11-04	BMC Med	Treatment- and population-specific genetic risk factors for anti-drug antibodies against interferon-beta: a GWAS.	Neutralising antibody response to interferon beta therapy in multiple sclerosis (presence of antibodies; IFN?-1b subcutaneous)	up to 2,000 German and Swedish ancestry individuals	up to 757 German and Swedish ancestry individuals	6p21.32		rs28366299-A	0.19	7E-19		1.27	[1.0-1.54] unit increase	Illumina [8550834] (imputed)	N
615	chr6_ssto_hap7	3997416	3997417	rs28366301	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	High density lipoprotein cholesterol levels	70,657 Japanese ancestry individuals	NA	6p21.32	HLA-DRB1, HLA-DQA1	rs28366301-?	NR	8E-11		0.03687	[0.026-0.048] unit increase novel	Illumina [6108953] (imputed)	N
615	chr6_ssto_hap7	3997600	3997601	rs9270576	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	78,744 East Asian ancestry individuals	NA	6p21.32	NR	rs9270576-C	0.620915	3E-28		0.071855	[0.059-0.085] SD units increase	Affymetrix, Illumina [16289093] (imputed)	N
615	chr6_ssto_hap7	3997815	3997816	rs35525122	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on myeloid Dendritic Cell	2,872 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs35525122-A	0.10869	1E-65		0.8525	[0.76-0.95] unit increase	Illumina [17926605] (imputed)	N
615	chr6_ssto_hap7	3997832	3997833	rs9270585	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on CD14+ monocyte	3,629 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9270585-T	0.5757300000000001	6E-92		0.5871	[0.53-0.64] unit decrease	Illumina [18218967] (imputed)	N
615	chr6_ssto_hap7	3997832	3997833	rs9270585	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on CD14+ CD16- monocyte	3,629 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9270585-T	0.5757300000000001	3E-98		0.6054	[0.55-0.66] unit decrease	Illumina [18218967] (imputed)	N
615	chr6_ssto_hap7	3997859	3997860	rs9270588	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on monocyte	3,629 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9270588-T	0.5771	3E-78		0.5388	[0.48-0.59] unit decrease	Illumina [18218967] (imputed)	N
615	chr6_ssto_hap7	3997859	3997860	rs9270588	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on CD33+ HLA DR+ CD14dim	1,578 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9270588-T	0.43503	8E-26		0.4302	[0.35-0.51] unit decrease	Illumina [16958370] (imputed)	N
615	chr6_ssto_hap7	3997859	3997860	rs9270588	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on CD33+ HLA DR+ CD14-	1,579 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9270588-T	0.43507	2E-49		0.5992	[0.52-0.68] unit decrease	Illumina [16961968] (imputed)	N
615	chr6_ssto_hap7	3997902	3997903	rs35139284	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Rheumatoid arthritis	8,255 European ancestry cases, 409,001 European ancestry controls, 5,348 East Asian ancestry cases, 173,268 East Asian ancestry controls	NA	6p21.32		rs35139284-T	NR	4E-287		0.5387	[0.51-0.57] unit increase	Affymetrix, Illumina [25835038] (imputed)	N
615	chr6_ssto_hap7	3997902	3997903	rs35139284	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DRB1	rs35139284-T	NR	4E-17		0.0253723	[0.019-0.031] unit increase	Affymetrix [319769] (imputed)	N
615	chr6_ssto_hap7	3997902	3997903	rs35139284	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DRB1	rs35139284-T	NR	8E-11		0.0218487	[0.015-0.028] unit increase	Affymetrix [323858] (imputed)	N
615	chr6_ssto_hap7	3997902	3997903	rs35139284	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DRB1	rs35139284-T	NR	1E-16		0.0250062	[0.019-0.031] unit increase	Affymetrix [319769] (imputed)	N
615	chr6_ssto_hap7	3997902	3997903	rs35139284	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	HLA-DRB1	rs35139284-T	NR	4E-10		0.0210099	[0.014-0.028] unit increase	Affymetrix [127266] (imputed)	N
615	chr6_ssto_hap7	3997902	3997903	rs35139284	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	HLA-DRB1	rs35139284-T	NR	1E-8		0.0174619	[0.011-0.023] unit increase	Affymetrix [321114] (imputed)	N
615	chr6_ssto_hap7	3997902	3997903	rs35139284	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DRB1	rs35139284-T	NR	5E-16		0.0247016	[0.019-0.031] unit increase	Affymetrix [321169] (imputed)	N
615	chr6_ssto_hap7	3997902	3997903	rs35139284	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	6p21.32	HLA-DRB1, HLA-DQA1	rs35139284-T	0.32	7E-23		9.85	z-score increase	Affymetrix [4311822] (imputed)	N
615	chr6_ssto_hap7	3997902	3997903	rs35139284	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on B cell	3,660 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs35139284-T	0.40599	4E-10		0.183	[0.13-0.24] unit increase	Illumina [18238700] (imputed)	N
615	chr6_ssto_hap7	3997907	3997908	rs201291779	34108613	Ivarsdottir EV	2021-06-09	Commun Biol	The genetic architecture of age-related hearing impairment revealed by genome-wide association analysis.	Age-related hearing impairment	121,934 European ancestry cases, 591,699 European ancestry controls	NA	6p21.32	HLA-DRB1	rs201291779-T	1.58	5E-14	(additive)	1.15	[NR]	Affymetrix, Illumina [46900000] (imputed)	N
615	chr6_ssto_hap7	3997956	3997957	rs9270591	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Monocytic Myeloid-Derived Suppressor Cells Absolute Count	1,855 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9270591-T	0.43396	5E-26		0.4161	[0.34-0.49] unit increase	Illumina [17197940] (imputed)	N
615	chr6_ssto_hap7	3997956	3997957	rs9270591	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR++ monocyte %leukocyte	3,595 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9270591-T	0.5705100000000001	7E-18		0.2715	[0.21-0.33] unit decrease	Illumina [18380843] (imputed)	N
615	chr6_ssto_hap7	3997956	3997957	rs9270591	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on Hematopoietic Stem Cell	1,634 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9270591-T	0.43702	3E-48		0.5658	[0.49-0.64] unit decrease	Illumina [16999215] (imputed)	N
615	chr6_ssto_hap7	3998187	3998188	rs9270599	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on B cell	3,060 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9270599-A	0.62618	3E-65		0.5573	[0.49-0.62] unit increase	Illumina [18012789] (imputed)	N
615	chr6_ssto_hap7	3999434	3999435	rs9270632	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.32		rs9270632-G	0.676	3E-48				Affymetrix [10369434] (imputed)	N
615	chr6_ssto_hap7	3999551	3999552	rs9270637	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs9270637-G	0.293	9E-20	(Complement C4, C4A.C4B.4481.34.2)	0.24	[0.18-0.3] unit decrease	Affymetrix [10572788] (imputed)	N
615	chr6_ssto_hap7	3999553	3999554	rs28383169	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	6p21.32		rs28383169-G	0.44037	4E-19		0.0246375	[0.019-0.03] unit decrease	Illumina [13479924] (imputed)	N
615	chr6_ssto_hap7	3999666	3999667	rs117726495	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs affecting bone structure and mineralization)	7,870 European ancestry cases, 207,798 European ancestry controls, 6,143 East Asian ancestry cases, 172,583 East Asian ancestry controls	NA	6p21.32		rs117726495-A	NR	8E-16		0.2102	[0.16-0.26] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
615	chr6_ssto_hap7	3999705	3999706	rs9270647	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DRB1	rs9270647-C	NR	9E-12		0.0207928	[0.015-0.027] unit decrease	Affymetrix [319769] (imputed)	N
615	chr6_ssto_hap7	3999705	3999706	rs9270647	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DRB1	rs9270647-C	NR	2E-12		0.0216513	[0.016-0.028] unit decrease	Affymetrix [321169] (imputed)	N
615	chr6_ssto_hap7	3999708	3999709	rs9270649	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DRB1	rs9270649-A	NR	2E-11		0.0205577	[0.015-0.027] unit decrease	Affymetrix [319769] (imputed)	N
615	chr6_ssto_hap7	4000000	4000001	rs2647078	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs2647078-C	0.806	9E-21		0.803	[0.76-0.85]	Illumina [11270530] (imputed)	N
615	chr6_ssto_hap7	4000477	4000478	rs4329147	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	6p21.32	HLA-DRB1	rs4329147-T	0.83	1E-11		1.11	[1.09-1.13]	Illumina [at least 560000] (imputed)	N
615	chr6_ssto_hap7	4000477	4000478	rs4329147	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	6p21.32	HLA-DRB5, HLA-DQA1	rs4329147-?	NR	1E-11		1.111	[1.078-1.146]	Illumina [13754664] (imputed)	N
615	chr6_ssto_hap7	4001158	4001159	rs687308	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (immunosuppressants)	3,954 European ancestry cases, 268,648 European ancestry controls	NA	6p21.32	HLA-DRB1	rs687308-T	0.191895	2E-84		0.5610923	[0.5-0.62] unit increase	Affymetrix [7288503] (imputed)	N
615	chr6_ssto_hap7	4002038	4002039	rs7450706	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	6p21.32		rs7450706-T	0.046397	4E-13		0.040589344	[0.03-0.052] unit decrease	Affymetrix [93095623] (imputed)	N
615	chr6_ssto_hap7	4002191	4002192	rs9270747	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)(bidirectional)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs9270747-A	NR	2E-32				Affymetrix [7846216] (imputed)	N
615	chr6_ssto_hap7	4002245	4002246	rs9270750	26956414	Berndt SI	2016-03-09	Nat Commun	Meta-analysis of genome-wide association studies discovers multiple loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	3,100 European ancestry cases, 7,667 European ancestry controls	1,958 cases,  5,530 controls	6p21.32	HLA-DQB1, HLA-DRB1, HLA-DRB5	rs9270750-A	0.543	6E-16		1.32	[1.23-1.41]	Affymetrix, Illumina [~ 8500000] (imputed)	N
615	chr6_ssto_hap7	4002947	4002948	rs9270779	29769521	Ramirez J	2018-05-16	Nat Commun	Thirty loci identified for heart rate response to exercise and recovery implicate autonomic nervous system.	Heart rate response to exercise	up to 35,455 European ancestry females, up to 31,802 European ancestry males	NA	6p21.32	HLA-DRB5, HLA-DRB1	rs9270779-T	0.323	1E-8	(females)	0.538	[0.35-0.72] bpm decrease	Affymetrix [~ 7800000] (imputed)	N
615	chr6_ssto_hap7	4003193	4003194	rs9270798	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DRB1	rs9270798-A	NR	2E-8		0.0191935	[0.013-0.026] unit decrease	Affymetrix [319769] (imputed)	N
615	chr6_ssto_hap7	4003347	4003348	rs140177540	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p21.32	HLA-DRB1	rs140177540-?	0.47	5E-15		1.06	[1.05-1.07]	Illumina [at least 560000] (imputed)	N
615	chr6_ssto_hap7	4003584	4003585	rs477515	25817017	Carmona FD	2015-03-26	Am J Hum Genet	A large-scale genetic analysis reveals a strong contribution of the HLA class II region to giant cell arteritis susceptibility.	Giant cell arteritis	1,651 European ancestry cases, 15,306 European ancestry controls	NA	6p21.32	HLA-DRB1, HLA-DQA1	rs477515-?		4E-40		1.73	[1.59-1.87]	Illumina [95416]	N
615	chr6_ssto_hap7	4003584	4003585	rs477515	24282030	Pan L	2013-11-28	Hum Mol Genet	A genome-wide association study identifies polymorphisms in the HLA-DR region associated with non-response to hepatitis B vaccination in Chinese Han populations.	Hepatitis B vaccine response	108 Han Chinese ancestry high-responder cases, 77 Han Chinese ancestry non-responder controls	1,336 Han Chinese ancestry high-responder cases, 420 Han Chinese ancestry non-responder controls	6p21.32	HLA-DRA, BTNL2, HLA-DRB1, C6orf10	rs477515-T	0.442	3E-19		2.05	[1.75-2.41]	Illumina [588026]	N
615	chr6_ssto_hap7	4003584	4003585	rs477515	23326239	Rubicz R	2013-01-10	PLoS Genet	A genome-wide integrative genomic study localizes genetic factors influencing antibodies against Epstein-Barr virus nuclear antigen 1 (EBNA-1).	Epstein-Barr virus immune response (EBNA-1)	1,367 Mexican American indivduals	589 Mexican American indivduals	6p21.32	HLA-DRB1	rs477515-T	0.32	3E-13	(Quantitative)	0.28	[NR] unit decrease	Illumina [944565]	N
615	chr6_ssto_hap7	4003584	4003585	rs477515	18758464	Kugathasan S	2008-08-31	Nat Genet	Loci on 20q13 and 21q22 are associated with pediatric-onset inflammatory bowel disease.	Inflammatory bowel disease	1,011 European ancestry cases, 4,250 European ancestry controls	1,922 European ancestry cases, 14,124 European ancestry controls	6p21.32	HLA-DQA1	rs477515-?	0.69	1E-8		1.38	[1.23-1.54]	Illumina [NR]	N
615	chr6_ssto_hap7	4003823	4003824	rs116763083	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	HLA-DRB1	rs116763083-A	0.026	4E-16	(C-C motif chemokine 19, CCL19.4922.13.1)	0.63	[0.47-0.79] unit increase	Affymetrix [10572788] (imputed)	N
615	chr6_ssto_hap7	4004202	4004203	rs34039593	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on plasmacytoid Dendritic Cell	2,872 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs34039593-G	0.11165	6E-146		1.217	[1.13-1.3] unit increase	Illumina [17926607] (imputed)	N
615	chr6_ssto_hap7	4004202	4004203	rs34039593	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on Dendritic Cell	2,871 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs34039593-G	0.11169	4E-110		1.075	[0.98-1.17] unit increase	Illumina [17926566] (imputed)	N
615	chr6_ssto_hap7	4004202	4004203	rs34039593	29534301	Nishida N	2018-03-13	Hepatology	Key HLA-DRB1-DQB1 haplotypes and role of the BTNL2 gene for response to a hepatitis B vaccine.	Response to hepatitis B vaccine	107 Japanese ancestry low responder individuals, 351 Japanese ancestry intermediate responder individuals, 735 Japanese ancestry high responder individuals	NA	6p21.32	HLA-DQA1	rs34039593-?		6E-12		0.2	unit increase	Affymetrix [427664]	N
615	chr6_ssto_hap7	4004291	4004292	rs2516049	31596875	Traylor M	2019-10-09	PLoS One	Genetic associations with radiological damage in rheumatoid arthritis: Meta-analysis of seven genome-wide association studies of 2,775 cases.	Joint damage in rheumatoid arthritis	2,527 European ancestry individuals	NA	6p21.32	intergenic	rs2516049-?	NR	3E-6	(adjusted for rheumatoid factor)			Affymetrix, Illumina [2723488] (imputed)	N
615	chr6_ssto_hap7	4004291	4004292	rs2516049	31375628	Tengvall K	2019-08-02	Proc Natl Acad Sci U S A	Molecular mimicry between Anoctamin 2 and Epstein-Barr virus nuclear antigen 1 associates with multiple sclerosis risk.	Anti-anoctamin 2 antibody levels	11,936 European ancestry individuals	NA	6p21.32	NR	rs2516049-G	NR	7E-15		0.092	[0.065-0.119] unit decrease	Illumina [615763]	N
615	chr6_ssto_hap7	4004291	4004292	rs2516049	26819262	Zhou Y	2016-01-27	Mult Scler	Genetic loci for Epstein-Barr virus nuclear antigen-1 are associated with risk of multiple sclerosis.	Epstein Barr virus nuclear antigen 1 IgG levels	1,243 parents and up to 2,356 children from 992 families, 1,956 Mexican American individuals		6p21.32	NR	rs2516049-T		6E-14	(Mexican American)	0.204	unit increase	Illumina [up to 2428201] (imputed)	N
615	chr6_ssto_hap7	4004291	4004292	rs2516049	26819262	Zhou Y	2016-01-27	Mult Scler	Genetic loci for Epstein-Barr virus nuclear antigen-1 are associated with risk of multiple sclerosis.	Epstein Barr virus nuclear antigen 1 IgG levels	1,243 parents and up to 2,356 children from 992 families, 1,956 Mexican American individuals		6p21.32	NR	rs2516049-T		4E-9	(non-Mexican American)	0.204	unit increase	Illumina [up to 2428201] (imputed)	N
615	chr6_ssto_hap7	4004291	4004292	rs2516049	26819262	Zhou Y	2016-01-27	Mult Scler	Genetic loci for Epstein-Barr virus nuclear antigen-1 are associated with risk of multiple sclerosis.	Epstein Barr virus nuclear antigen 1 IgG levels	1,243 parents and up to 2,356 children from 992 families, 1,956 Mexican American individuals		6p21.32	NR	rs2516049-T		3E-20		0.204	unit increase	Illumina [up to 2428201] (imputed)	N
615	chr6_ssto_hap7	4004292	4004293	rs2454138	29521573	Buck D	2018-03-01	Mult Scler	Effect of HLA-DRB1 alleles and genetic variants on the development of neutralizing antibodies to interferon beta in the BEYOND and BENEFIT trials.	Neutralising antibody response to interferon beta therapy in multiple sclerosis (mean antibody levels)	926 European ancestry individuals, 7 Hispanic individuals, 1 Asian ancestry individuals, 1 African ancestry individual, 4 other unknown ancestry individuals, 2 individuals	NA	6p21.32	intergenic	rs2454138-A	0.22	5E-19		0.41	[0.31-0.51] unit increase	Affymetrix [8671751] (imputed)	N
615	chr6_ssto_hap7	4004292	4004293	rs2454138	29521573	Buck D	2018-03-01	Mult Scler	Effect of HLA-DRB1 alleles and genetic variants on the development of neutralizing antibodies to interferon beta in the BEYOND and BENEFIT trials.	Neutralising antibody response to interferon beta therapy in multiple sclerosis (maximum antibody levels)	926 European ancestry individuals, 7 Hispanic individuals, 1 Asian ancestry individuals, 1 African ancestry individual, 4 other unknown ancestry individuals, 2 individuals	NA	6p21.32	intergenic	rs2454138-A	0.22	1E-18		0.41	unit increase	Affymetrix [8671751] (imputed)	N
615	chr6_ssto_hap7	4004292	4004293	rs2454138	29521573	Buck D	2018-03-01	Mult Scler	Effect of HLA-DRB1 alleles and genetic variants on the development of neutralizing antibodies to interferon beta in the BEYOND and BENEFIT trials.	Neutralising antibody response to interferon beta therapy in multiple sclerosis (area under the curve for the first two years)	926 European ancestry individuals, 7 Hispanic individuals, 1 Asian ancestry individuals, 1 African ancestry individual, 4 other unknown ancestry individuals, 2 individuals	NA	6p21.32	intergenic	rs2454138-A	0.22	8E-19		0.41	[0.31-0.51] unit increase	Affymetrix [8671751] (imputed)	N
615	chr6_ssto_hap7	4004308	4004309	rs2647062	32201043	Smeland OB	2020-02-08	Biol Psychiatry	Genome-wide Association Analysis of Parkinson's Disease and Schizophrenia Reveals Shared Genetic Architecture and Identifies Novel Risk Loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	NA	6p21.32	HLA-DRB1	rs2647062-A		6E-12		0.143	[0.1-0.18] unit increase	Illumina [NR]	N
615	chr6_ssto_hap7	4004308	4004309	rs2647062	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	148,164 European ancestry individuals	NA	6p21.32	HLA-DRB1	rs2647062-A	0.84	1E-11	(BMI-adjusted)	0.048	[0.034-0.062] unit decrease	Affymetrix, Illumina, Perlegen [10019203] (imputed)	N
615	chr6_ssto_hap7	4004754	4004755	rs556025	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	6p21.32		rs556025-T	0.35263	3E-8		0.039419	[0.025-0.053] unit increase	Affymetrix [15580782] (imputed)	N
615	chr6_ssto_hap7	4004853	4004859	rs749637599	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hearing loss, difficulty in hearing	14,654 European ancestry cases, 474,839 European ancestry controls, 3,400 East Asian ancestry cases, 175,326 East Asian ancestry controls	NA	6p21.32		rs749637599-G	NR	3E-12		0.174	[0.13-0.22] unit increase	Affymetrix, Illumina [25845022] (imputed)	N
615	chr6_ssto_hap7	4005193	4005194	rs9270878	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	HLA-DRB1	rs9270878-A	NR	9E-10		0.0181825	[0.012-0.024] unit decrease	Affymetrix [321114] (imputed)	N
615	chr6_ssto_hap7	4005423	4005424	rs9270891	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs9270891-G	0.159	6E-35	(Ubiquitin carboxyl-terminal hydrolase 25, USP25.9215.117.3)	0.41	[0.35-0.47] unit increase	Affymetrix [10572788] (imputed)	N
615	chr6_ssto_hap7	4005555	4005556	rs17425622	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PLXDC2	5,360 Icelandic ancestry individuals	NA	6p21.32		rs17425622-C	0.1783	1E-21		0.224277	[0.18-0.27] unit decrease	Illumina [7506463] (imputed)	N
615	chr6_ssto_hap7	4005555	4005556	rs17425622	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Parkinson's disease	9,619 European ancestry cases, 324,522 European ancestry controls	NA	6p21.32	HLA-DQA1, HLA-DRB5	rs17425622-?	NR	4E-17		1.235	[1.174-1.298]	Illumina [12438219] (imputed)	N
615	chr6_ssto_hap7	4005698	4005699	rs34102154	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Non-Hodgkin's lymphoma	2,400 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs34102154-G	NR	1E-14		1.431	NR	Affymetrix [7846216] (imputed)	N
615	chr6_ssto_hap7	4005794	4005795	rs9270911	33558538	Gebresilase T	2021-02-08	Sci Rep	Replication of HLA class II locus association with susceptibility to podoconiosis in three Ethiopian ethnic groups.	Podoconiosis	1,137 Ethiopian ancestry cases, 1,152 Ethiopian ancestry controls	NA	6p21.32	intergenic	rs9270911-T	0.44	2E-12				Illumina [2201695]	N
615	chr6_ssto_hap7	4005794	4005795	rs9270911	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs9270911-?	NR	1E-27				Affymetrix [~ 8270000] (imputed)	N
615	chr6_ssto_hap7	4006765	4006766	rs601006	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	HLA-DRB1	rs601006-A	NR	9E-10		0.0179058	[0.012-0.024] unit increase	Affymetrix [321114] (imputed)	N
615	chr6_ssto_hap7	4006999	4007000	rs601945	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	6p21.32	MHC	rs601945-G	0.1775	5E-8		1.06	[1.04-1.08]	Affymetrix, Illumina [~ 27000000] (imputed)	N
615	chr6_ssto_hap7	4007055	4007056	rs9270965	24204295	Han F	2013-10-31	PLoS Genet	Genome wide analysis of narcolepsy in China implicates novel immune loci and reveals changes in association prior to versus after the 2009 H1N1 influenza pandemic.	Narcolepsy (onset before 2009 H1N1 influenza pandemic)	up to 893 Chinese ancestry cases with onset before the 2009 H1N1 influenza pandemic, up to 373 Chinese ancestry cases with onset after the 2009 H1N1 influenza pandemic	NA	6p21.32	NR	rs9270965-?	NR	5E-12		1.72	[NR]	Affymetrix [603382]	N
615	chr6_ssto_hap7	4007158	4007159	rs9270970	32771030	Tangtanatakul P	2020-08-08	Arthritis Res Ther	Meta-analysis of genome-wide association study identifies FBN2 as a novel locus associated with systemic lupus erythematosus in Thai population.	Systemic lupus erythematosus	487 Thai cases, 1,606 Thai controls	405 Thai cases, 1,590 Thai controls	6p21.32	HLA-DRB1, HLA-DQA1	rs9270970-G	0.42	4E-26		1.8293	[NR]	Illumina [421909] (imputed)	N
615	chr6_ssto_hap7	4007212	4007213	rs144123929	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in IDL	115,082 European ancestry individuals	NA	6p21.32		rs144123929-C	0.971917	1E-8		0.0862226	[0.057-0.116] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4007213	4007214	rs602875	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DRB1	rs602875-G	NR	1E-8		0.0188152	[0.012-0.025] unit decrease	Affymetrix [319769] (imputed)	N
615	chr6_ssto_hap7	4007213	4007214	rs602875	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DRB1	rs602875-G	NR	3E-8		0.0183289	[0.012-0.025] unit decrease	Affymetrix [319769] (imputed)	N
615	chr6_ssto_hap7	4007213	4007214	rs602875	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DRB1	rs602875-G	NR	4E-9		0.0196908	[0.013-0.026] unit decrease	Affymetrix [321169] (imputed)	N
615	chr6_ssto_hap7	4007213	4007214	rs602875	20018961	Zhang FR	2009-12-16	N Engl J Med	Genomewide association study of leprosy.	Leprosy	706 Han Chinese ancestry cases, 1,225 Han Chinese ancestry controls	3,254 Chinese ancestry cases, 5,955 Chinese ancestry controls	6p21.32	HLA-DR-DQ	rs602875-A	0.68	5E-27		1.61	[1.39-1.61]	Illumina [491883]	N
615	chr6_ssto_hap7	4007498	4007499	rs2647071	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DRB1	rs2647071-T	NR	2E-8		0.0181138	[0.012-0.024] unit increase	Affymetrix [321169] (imputed)	N
615	chr6_ssto_hap7	4007580	4007581	rs9270984	23273568	Yang W	2012-12-27	Am J Hum Genet	Meta-analysis followed by replication identifies loci in or near CDKN1B, TET3, CD80, DRAM1, and ARID5B as associated with systemic lupus erythematosus in Asians.	Systemic lupus erythematosus	1,656 Han Chinese ancestry cases, 3,394 Han Chinese ancestry controls	3,256 Han Chinese ancestry cases, 5,667 Han Chinese ancestry controls, 453 Thai ancestry cases, 963 Thai ancestry controls	6p21.32	HLA-DRB1	rs9270984-T	0.18	5E-24		1.73		Illumina [2100739] (imputed)	N
615	chr6_ssto_hap7	4007649	4007650	rs9270986	25643325	Renton AE	2015-04-01	JAMA Neurol	A genome-wide association study of myasthenia gravis.	Myasthenia gravis	972 European ancestry cases, 1,977 European ancestry controls	423 European ancestry cases, 467 European ancestry controls	6p21.32	HLA-DRB1, HLA-DQA1	rs9270986-A	0.15	6E-8		1.43	[NR]	Illumina [8114394] (imputed)	N
615	chr6_ssto_hap7	4007760	4007761	rs615672	33736632	Zeng Z	2021-03-18	BMC Med Genomics	Genome-wide association study identifies new loci associated with risk of HBV infection and disease progression.	Persistent hepatitis B virus infection	587 Chinese ancestry persistent cases, 275 Chinese ancestry clearance controls	NA	6p21.32	HLA-DRB1	rs615672-G	0.5276	9E-7		0.5697	NR	Affymetrix [607153]	N
615	chr6_ssto_hap7	4007760	4007761	rs615672	33736632	Zeng Z	2021-03-18	BMC Med Genomics	Genome-wide association study identifies new loci associated with risk of HBV infection and disease progression.	Hepatitis B	460 Chinese ancestry cases, 169 Chinese ancestry controls	NA	6p21.32	HLA-DRB1	rs615672-?	NR	1E-6				Affymetrix [607153]	N
615	chr6_ssto_hap7	4007760	4007761	rs615672	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.32	HLA-DRB1	rs615672-G	0.6531	2E-8	(EA)	0.0253	[0.016-0.034] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
615	chr6_ssto_hap7	4007760	4007761	rs615672	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.32	HLA-DRB1	rs615672-G	0.6427	1E-8		0.0242	[0.016-0.032] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
615	chr6_ssto_hap7	4007760	4007761	rs615672	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6p21.32	HLA, DRB1	rs615672-G	0.6531	1E-6	(EA)	0.0244	[0.014-0.034] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
615	chr6_ssto_hap7	4007760	4007761	rs615672	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	6p21.32	HLA, DRB1	rs615672-G	0.6427	1E-6		0.0235	[0.014-0.033] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
615	chr6_ssto_hap7	4007760	4007761	rs615672	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.32	HLA-DRB1	rs615672-?	0.6531	2E-7	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
615	chr6_ssto_hap7	4007760	4007761	rs615672	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	6p21.32	HLA-DRB1	rs615672-?	0.6427	1E-7				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
615	chr6_ssto_hap7	4007760	4007761	rs615672	17554300	Wellcome Trust Case Control Consortium	2007-06-07	Nature	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Rheumatoid arthritis	1,860 European ancestry cases, 2,938 European ancestry controls	NA	6p21.32	HLA-DRB1	rs615672-?	NR	8E-27				Affymetrix [469557]	N
615	chr6_ssto_hap7	4007947	4007948	rs2760995	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	6p21.32	NR	rs2760995-?	NR	6E-11				Affymetrix [~ 8270000] (imputed)	N
615	chr6_ssto_hap7	4007947	4007948	rs2760995	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals, 6,795 African American individuals, 6,324 East Asian ancestry individuals, 2,335 South Asian ancestry individuals, 1,442 Hispanic individuals	NA	6p21.32	HLA-DRB	rs2760995-A	NR	4E-8		0.014	[0.0091-0.0189] unit decrease	Affymetrix, Illumina [8034757] (imputed)	N
615	chr6_ssto_hap7	4007947	4007948	rs2760995	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Microalbuminuria	51,861 European, African American, East Asian, South Asian or Hispanic ancestry cases, 297,093 European, African American, East Asian, South Asian or Hispanic ancestry controls	NA	6p21.32	HLA-DRB	rs2760995-G	NR	3E-7		1.0445645	[1.03-1.06]	Affymetrix, Illumina [8326000] (imputed)	N
615	chr6_ssto_hap7	4007949	4007950	rs2647074	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (anti-inflammatory and antirheumatic products, non-steroids)	74,150 European ancestry cases, 90,370 European ancestry controls, 29,694 East Asian ancestry cases, 149,032 East Asian ancestry controls	NA	6p21.32		rs2647074-T	NR	3E-12		0.0772	[0.056-0.099] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
615	chr6_ssto_hap7	4007949	4007950	rs2647074	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DRB1	rs2647074-T	NR	1E-8		0.0186096	[0.012-0.025] unit decrease	Affymetrix [323123] (imputed)	N
615	chr6_ssto_hap7	4007949	4007950	rs2647074	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Aspartate aminotransferase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	6p21.32	HLA-DRB1, HLA-DQA1	rs2647074-?		1E-13		0.0387	[0.029-0.049] unit decrease	Illumina [31500000] (imputed)	N
615	chr6_ssto_hap7	4007949	4007950	rs2647074	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs2647074-T	0.328	1E-34	(Complement C4, C4A.C4B.4481.34.2)	0.32	[0.26-0.38] unit increase	Affymetrix [10572788] (imputed)	N
615	chr6_ssto_hap7	4007949	4007950	rs2647074	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Total bilirubin levels	110,207 Japanese ancestry individuals	NA	6p21.32	HLA-DRB1, HLA-DQA1	rs2647074-?	NR	3E-10		0.03828	[0.026-0.05] unit increase novel	Illumina [6108953] (imputed)	N
615	chr6_ssto_hap7	4008147	4008148	rs539705259	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on CD33dim HLA DR+ CD11b+	1,634 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs539705259-G	0.03706	4E-12		0.8225	[0.59-1.05] unit increase	Illumina [16998734] (imputed)	N
615	chr6_ssto_hap7	4008185	4008186	rs113315602	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	6p21.32	HLA-DRB1	rs113315602-A	0.9027	9E-12		0.003	[0.002-0.004] unit increase	Affymetrix [15275733] (imputed)	N
615	chr6_ssto_hap7	4008475	4008476	rs7760841	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	6p21.32	HLA-DQA1, HLA-DQB1, HLA-DRA, HLA-DRB1, HLA-DRB5, HLA-DRB6	rs7760841-T	0.176847	1E-12		1.1059403	[1.08-1.13]	Affymetrix [8274727] (imputed)	N
615	chr6_ssto_hap7	4008563	4008564	rs145945003	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Yeast infection	52,218 European ancestry cases, 10,235 European ancestry controls	NA	6p21.32	NR	rs145945003-?	NR	1E-7		0.0858	[0.054-0.117] unit decrease	Illumina [at least 560000] (imputed)	N
615	chr6_ssto_hap7	4008597	4008598	rs9271025	34532061	Hodel F	2021-06-11	Virus Evol	Human genomics of the humoral immune response against polyomaviruses.	Anti-JC polyomavirus IgG seropositivity	8,567 European ancestry antibody-positive cases cases, up to 6,836 European ancestry antibody-negative controls	NA	6p21.32		rs9271025-?	NR	4E-46				Affymetrix [NR] (imputed)	N
615	chr6_ssto_hap7	4008706	4008707	rs7761182	27864402	Harris SE	2017-06-01	Int J Epidemiol	Molecular genetic contributions to self-rated health.	Self-rated health	111,749 British ancestry individuals	NA	6p21.32	HLA	rs7761182-?	NR	2E-9		0.03	[NR] unit increase	Affymetrix [~ 17300000] (imputed)	N
615	chr6_ssto_hap7	4008824	4008825	rs13193738	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Strep throat	52,487 European ancestry cases, 22,017 European ancestry controls	NA	6p21.32	NR	rs13193738-?	NR	1E-7		0.0467	[0.029-0.064] unit increase	Illumina [at least 560000] (imputed)	N
615	chr6_ssto_hap7	4009039	4009040	rs113742050	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DRB1	rs113742050-T	NR	4E-12		0.0348298	[0.025-0.045] unit increase	Affymetrix [319769] (imputed)	N
615	chr6_ssto_hap7	4009039	4009040	rs113742050	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DRB1	rs113742050-T	NR	2E-12		0.0353099	[0.025-0.045] unit increase	Affymetrix [319769] (imputed)	N
615	chr6_ssto_hap7	4009120	4009121	rs9271060	26891255	Jung ES	2016-02-18	Inflamm Bowel Dis	HLA-C*01 is a Risk Factor for Crohn's Disease.	Crohn's disease	275 Korean ancestry cases, 2,369 Korean ancestry controls	242 Korean ancestry cases, 1,066 Korean ancestry controls	6p21.32	HLA-DQA1, HLA-DRB1	rs9271060-G	0.77	1E-22		2.857143	[2.33-3.57]	Affymetrix [3387207] (imputed)	N
615	chr6_ssto_hap7	4009131	4009132	rs4713555	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs4713555-?	NR	7E-13				Affymetrix [~ 8270000] (imputed)	N
615	chr6_ssto_hap7	4009131	4009132	rs4713555	26482879	Paternoster L	2015-10-19	Nat Genet	Multi-ancestry genome-wide association study of 21,000 cases and 95,000 controls identifies new risk loci for atopic dermatitis.	Atopic dermatitis	18,900 European ancestry cases, 1,472 Japanese ancestry cases, 422 African American cases, 300 Latino cases, 305 cases, 84,166 European ancestry controls, 7,966 Japanese ancestry controls, 844 African American controls, 1,592 Latino controls, 896 controls	30,588 European ancestry cases, 459 African American cases, 1,012 Chinese ancestry cases, 226,537 European ancestry controls, 729 African American controls, 1,362 Chinese ancestry controls	6p21.32	HLA-DRB1, HLA-DQA1	rs4713555-G	0.73	5E-9	(EA, fixed effects)	1.098901		Illumina [15539996] (imputed)	N
615	chr6_ssto_hap7	4009238	4009239	rs9271066	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	683 Turkish ancestry cases, 1,721 Turkish ancestry controls	NA	6p21.32	HLA-DRB1	rs9271066-?	NR	2E-11	(conditional on rs2844678, rs9262437, rs61444472 and rs17193507)			Illumina [4495750] (imputed)	N
615	chr6_ssto_hap7	4009265	4009266	rs3021304	25108386	Hou S	2014-08-10	Nat Genet	Genome-wide association analysis of Vogt-Koyanagi-Harada syndrome identifies two new susceptibility loci at 1p31.2 and 10q21.3.	Vogt-Koyanagi-Harada syndrome	774 Han Chinese ancestry cases, 2,009 Han Chinese ancestry controls	764 Han Chinese ancestry cases, 3594 Han Chinese ancestry controls	6p21.32	HLA-DRB1, HLA-DQA1	rs3021304-G	0.346	1E-118		2.97	[2.71-3.26]	Affymetrix, Illumina [2208258] (imputed)	N
615	chr6_ssto_hap7	4009342	4009343	rs9461776	25030430	Zignego AL	2014-07-17	Genes Immun	Genome-wide association study of hepatitis C virus- and cryoglobulin-related vasculitis.	Mixed cryoglobulinemia vasculitis in chronic hepatitis C infection	356 European ancestry cases, 447 European ancestry controls	92 European ancestry cases, 179 European ancestry controls	6p21.32	HLA-DQA1, HLA-DRB1	rs9461776-G	0.29	7E-9		2.02	[NR]	Illumina [899641]	N
615	chr6_ssto_hap7	4009590	4009591	rs12660719	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs12660719-A	0.961474	2E-15		0.0823824	[0.062-0.103] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4009693	4009694	rs9271082	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	IgA nephropathy	1,180 East Asian ancestry cases, 899 East Asian ancestry controls	NA			rs9271082-C	NR	8E-9		0.466252	[0.31-0.62] unit increase	Illumina [NR] (imputed)	N
615	chr6_ssto_hap7	4010083	4010084	rs9271100	25642632	Liu H	2015-02-02	Nat Genet	Discovery of six new susceptibility loci and analysis of pleiotropic effects in leprosy.	Leprosy	1,548 Chinese ancestry cases, 2,150 Chinese ancestry controls, 4,362 Chinese ancestry controls with immune-related diseases	6,765 Chinese ancestry cases, 9,505 Chinese ancestry controls	6p21.32	HLA-DR-DQ	rs9271100-T	0.217	8E-95		1.68	[NR]	Illumina [4577171] (imputed)	N
615	chr6_ssto_hap7	4010083	4010084	rs9271100	19838193	Han JW	2009-10-18	Nat Genet	Genome-wide association study in a Chinese Han population identifies nine new susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	1,047 Han Chinese ancestry cases, 1,205 Han Chinese ancestry controls	3,152 Han Chinese ancestry cases, 7,050 Han Chinese ancestry controls	6p21.32	HLA-DRB1	rs9271100-?	NR	1E-12		1.9	[1.59-2.27]	Illumina [493955]	N
615	chr6_ssto_hap7	4010400	4010401	rs9271117	24204295	Han F	2013-10-31	PLoS Genet	Genome wide analysis of narcolepsy in China implicates novel immune loci and reveals changes in association prior to versus after the 2009 H1N1 influenza pandemic.	Narcolepsy (onset before 2009 H1N1 influenza pandemic)	up to 893 Chinese ancestry cases with onset before the 2009 H1N1 influenza pandemic, up to 373 Chinese ancestry cases with onset after the 2009 H1N1 influenza pandemic	NA	6p21.32	NR	rs9271117-?	NR	6E-14		1.75	[NR]	Affymetrix [603382]	N
615	chr6_ssto_hap7	4010983	4010984	rs660895	33517400	Ahluwalia TS	2021-01-30	Hum Mol Genet	Genome-Wide Association Study of Circulating Interleukin 6 Levels Identifies Novel Loci.	Interleukin-6 levels	52,654 European ancestry individuals	14,774 European ancestry individuals	6p21.32	HLADRB1, HLADQA1	rs660895-G	0.186447	2E-10		0.035794	[0.024-0.047] unit increase	Affymetrix, Illumina, Perlegen [2454025] (imputed)	N
615	chr6_ssto_hap7	4010983	4010984	rs660895	32912934	Li M	2020-09-10	J Am Soc Nephrol	Genome-Wide Meta-Analysis Identifies Three Novel Susceptibility Loci and Reveals Ethnic Heterogeneity of Genetic Susceptibility for IgA Nephropathy.	IgA nephropathy	2,628 Chinese ancestry cases, 11,563 Chinese ancestry controls	6,879 Han Chinese ancestry cases, 9,019 Han Chinese ancestry controls, 1,039 Italian ancestry cases, 1,289 Italian ancestry controls	6p21.32	DQB1.DRB1	rs660895-G	0.2533255867854363	1E-14	(East Asian)	1.3539767	[1.25335647918749-1.46267487262285]	NR [3611808] (imputed)	N
615	chr6_ssto_hap7	4010983	4010984	rs660895	26028593	Li M	2015-06-01	Nat Commun	Identification of new susceptibility loci for IgA nephropathy in Han Chinese.	IgA nephropathy	1,434 Han Chinese ancestry cases, 10,661 Han Chinese ancestry controls	6,879 Han Chinese ancestry cases, 9,019 Han Chinese ancestry controls	6p21.32	NR	rs660895-G	0.259	1E-10		1.289	[1.184-1.402]	Illumina [3792949] (imputed)	N
615	chr6_ssto_hap7	4010983	4010984	rs660895	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis (ACPA-positive)	up to 9,585 European ancestry cases, up to 33,742 European ancestry controls	NA	6p21.32	HLA	rs660895-G	NR	1E-300		3.0299		Illumina [129464] (imputed)	N
615	chr6_ssto_hap7	4010983	4010984	rs660895	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis (ACPA-negative)	3,297 European ancestry cases, 15,870 European ancestry controls	NA	6p21.32	HLA	rs660895-G	NR	2E-8		1.2083		Illumina [129464]	N
615	chr6_ssto_hap7	4010983	4010984	rs660895	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis	up to 13,838 European ancestry cases, up to 33,742 European ancestry controls	NA	6p21.32	HLA	rs660895-G	NR	1E-300		2.265		Illumina [129464] (imputed)	N
615	chr6_ssto_hap7	4010983	4010984	rs660895	22197929	Yu XQ	2011-12-25	Nat Genet	A genome-wide association study in Han Chinese identifies multiple susceptibility loci for IgA nephropathy.	IgA nephropathy	1,434 Han Chinese ancestry cases, 4,270 Han Chinese ancestry controls	2,703 Han Chinese ancestry cases, 3,464 Han Chinese ancestry controls	6p21.32	HLA-DRB1	rs660895-G	0.24	4E-20		1.34	[1.26-1.42]	Illumina [444882]	N
615	chr6_ssto_hap7	4010983	4010984	rs660895	17804836	Plenge RM	2007-09-05	N Engl J Med	TRAF1-C5 as a risk locus for rheumatoid arthritis--a genomewide study.	Rheumatoid arthritis	1,522 European ancestry cases, 1,850 European ancestry controls	1,053 European ancestry cases, 1,858 European ancestry controls	6p21.32	HLA-DRB1	rs660895-?	0.21	1E-108		3.62	[NR]	Illumina [297086]	N
615	chr6_ssto_hap7	4010990	4010991	rs36022506	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.32	Intergenic	rs36022506-?		2E-6		1.06	[1.03-1.08]	Illumina [7645193] (imputed)	N
615	chr6_ssto_hap7	4011234	4011235	rs535777	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)(bidirectional)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs535777-G	NR	4E-12				Affymetrix [7846216] (imputed)	N
615	chr6_ssto_hap7	4011234	4011235	rs535777	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Help-seeking from a psychiatrist	36,286 British ancestry cases, 297,126 British ancestry controls	NA	6p21.32	NR	rs535777-G	0.862	1E-9		1.0752687	NR	NR [5276842] (imputed)	N
615	chr6_ssto_hap7	4011234	4011235	rs535777	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Help-seeking from a GP	113,262 British ancestry cases, 219,360 British ancestry controls	NA	6p21.32	NR	rs535777-?	NR	5E-6		1.0362694	[1.02-1.05]	NR [5276842] (imputed)	N
615	chr6_ssto_hap7	4011489	4011490	rs9271170	31766143	Ortega-Azorin C	2019-11-13	Nutrients	Candidate Gene and Genome-Wide Association Studies for Circulating Leptin Levels Reveal Population and Sex-Specific Associations in High Cardiovascular Risk Mediterranean Subjects.	Circulating leptin levels in high cardiovascular risk	351 Spanish mediterranean ancestry men, 615 Spanish mediterranean ancestry women	NA	6p21.32	intergenic	rs9271170-?	0.24	8E-6	(model 2)	0.161	NR unit increase	Illumina [628376]	N
615	chr6_ssto_hap7	4011680	4011681	rs674313	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	6p21.32	NR	rs674313-?	NR	2E-10	(MIC-A)	0.503744	[0.35-0.66] unit increase	Illumina [11901634] (imputed)	N
615	chr6_ssto_hap7	4011680	4011681	rs674313	21131588	Slager SL	2010-12-03	Blood	Genome-wide association study identifies a novel susceptibility locus at 6p21.3 among familial CLL.	Chronic lymphocytic leukemia	407 European ancestry cases, 296 European ancestry controls	252 European ancestry cases, 965 European ancestry controls	6p21.32	HLA-DRB5	rs674313-T	0.26	7E-9		1.69	[1.41-2.01]	Affymetrix [827777]	N
615	chr6_ssto_hap7	4011725	4011726	rs9271176	28165464	Law PJ	2017-02-06	Nat Commun	Genome-wide association analysis implicates dysregulation of immunity genes in chronic lymphocytic leukaemia.	Chronic lymphocytic leukemia	4,478 European ancestry cases and 13,213 European ancestry controls.	1,722 European ancestry cases and 4,385 European ancestry controls.	6p21.32	HLA	rs9271176-G	NR	3E-20		1.29	[1.22-1.36]	Affymetrix, Illumina [> 10000000] (imputed)	N
615	chr6_ssto_hap7	4011876	4011877	rs2858863	31235810	Fung K	2019-06-24	Sci Rep	Genome-wide association study identifies loci for arterial stiffness index in 127,121 UK Biobank participants.	Arterial stiffness index	127,121 European ancestry individuals	NA	6p21.32	HLA-DRB1	rs2858863-C	0.796	5E-6		0.023	[0.013-0.033] unit increase	Affymetrix [~ 10446505] (imputed)	N
615	chr6_ssto_hap7	4012128	4012129	rs9271192	31473137	Moreno-Grau S	2019-08-13	Alzheimers Dement	Genome-wide association analysis of dementia and its clinical endophenotypes reveal novel loci associated with Alzheimer's disease and three causality networks: The GR@ACE project.	Alzheimer's disease	4,120 Spanish ancestry cases, 17,008 cases, 3,289 Spanish ancestry controls, 37,154 controls	1,943 Spanish ancestry cases, 8,572 cases, 3,016 Spanish ancestry controls, 11,312 controls	6p21.32	HLA-DRB5	rs9271192-?	NR	5E-7		1.09	[1.13-1.05]	Affymetrix [up to 7055881] (imputed)	N
615	chr6_ssto_hap7	4012128	4012129	rs9271192	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	6p21.32	HLA-DRB5, HLA-DRB1	rs9271192-C	0.2751	4E-8		5.49	NR z-unit increase	Affymetrix, Illumina [up to 10847151] (imputed)	N
615	chr6_ssto_hap7	4012128	4012129	rs9271192	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease (late onset)	24,087 European ancestry cases, 55,058 European ancestry controls	NA	6p21.32	HLA-DRB5, HLA-DRB1	rs9271192-C	NR	5E-7		5.02	NR z-score increase	Illumina [up to 9862738] (imputed)	N
615	chr6_ssto_hap7	4012128	4012129	rs9271192	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	6p21.32	NR	rs9271192-?	NR	7E-10		1.0530598		Affymetrix [7795605] (imputed)	N
615	chr6_ssto_hap7	4012128	4012129	rs9271192	24162737	Lambert JC	2013-10-27	Nat Genet	Meta-analysis of 74,046 individuals identifies 11 new susceptibility loci for Alzheimer's disease.	Alzheimer's disease (late onset)	17,008 European ancestry cases, 37,154 European ancestry controls	8,572 European ancestry cases, 11,312 European ancestry controls	6p21.32	HLA-DRB5, HLA-DRB1	rs9271192-C	0.276	3E-12		1.11	[1.08-1.18]	Illumina [7055881] (imputed)	N
615	chr6_ssto_hap7	4012188	4012189	rs3997868	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.32	NR	rs3997868-?	NR	1E-13				Affymetrix [~ 8270000] (imputed)	N
615	chr6_ssto_hap7	4012231	4012232	rs5021727	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs5021727-A	0.540791	2E-9		0.0240273	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4012231	4012232	rs5021727	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs5021727-A	0.540791	4E-8		0.0219961	[0.014-0.03] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4012231	4012232	rs5021727	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs5021727-A	0.540791	1E-8		0.0228075	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4012231	4012232	rs5021727	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	6p21.32		rs5021727-?	NR	3E-9		0.00542275	[0.0036-0.0072] unit decrease	NR [NR]	N
615	chr6_ssto_hap7	4012231	4012232	rs5021727	31589552	Lind L	2019-10-07	Metab Syndr Relat Disord	Genome-Wide Association Study of the Metabolic Syndrome in UK Biobank.	Metabolic syndrome	291,107 European ancestry individuals	NA	6p21.32	HLA-DRB1	rs5021727-G	0.461566	2E-8		0.0371336	[0.024-0.05] unit increase	Affymetrix [9463307] (imputed)	N
615	chr6_ssto_hap7	4012633	4012634	rs9271209	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	6p21.32	NR	rs9271209-?	NR	2E-85	(EA)			Affymetrix, Illumina [~ 9000000] (imputed)	N
615	chr6_ssto_hap7	4013212	4013213	rs28752509	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs28752509-C	0.542361	3E-18		0.0343946	[0.027-0.042] unit increase	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4013212	4013213	rs28752509	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs28752509-C	0.542361	1E-17		0.0336941	[0.026-0.041] unit increase	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4013215	4013216	rs28752510	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs28752510-G	0.542559	5E-23		0.0388531	[0.031-0.047] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4013215	4013216	rs28752510	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6p21.32		rs28752510-G	0.542559	2E-17		0.033878	[0.026-0.042] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4013215	4013216	rs28752510	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	6p21.32		rs28752510-G	0.542559	5E-9		0.0230374	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4013215	4013216	rs28752510	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	6p21.32		rs28752510-G	0.542559	3E-13		0.0296091	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4013215	4013216	rs28752510	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	6p21.32		rs28752510-G	0.542559	3E-13		0.0294341	[0.022-0.037] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4013215	4013216	rs28752510	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	6p21.32		rs28752510-G	0.542559	4E-17		0.0335623	[0.026-0.041] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4013215	4013216	rs28752510	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs28752510-G	0.542559	4E-14		0.0312145	[0.023-0.039] unit increase	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4013215	4013216	rs28752510	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	6p21.32		rs28752510-G	0.542559	5E-10		0.0257222	[0.018-0.034] unit increase	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4013215	4013216	rs28752510	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs28752510-G	0.542559	1E-19		0.035402	[0.028-0.043] unit increase	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4013215	4013216	rs28752510	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	6p21.32		rs28752510-G	0.542559	2E-9		0.0240001	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4013215	4013216	rs28752510	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	6p21.32		rs28752510-G	0.542559	3E-14		0.030005	[0.022-0.038] unit increase	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4013215	4013216	rs28752510	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs28752510-G	0.542559	2E-20		0.0362502	[0.029-0.044] unit increase	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4013215	4013216	rs28752510	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	6p21.32		rs28752510-G	0.542559	2E-11		0.027339	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4013215	4013216	rs28752510	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	6p21.32		rs28752510-G	0.542559	2E-15		0.0309552	[0.023-0.039] unit increase	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4013260	4013261	rs13191975	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs13191975-T	NR	4E-12		0.0198638	[0.014-0.025] unit increase	Affymetrix [321169] (imputed)	N
615	chr6_ssto_hap7	4014089	4014090	rs9368730	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	6p21.32	HLA-DRB1, HLA-DQA1	rs9368730-G	0.876	2E-8		1.403	[0.74-2.07] ml/min/1.73m2 decrease	Affymetrix, Illumina [at least 5248638] (imputed)	N
615	chr6_ssto_hap7	4015088	4015089	rs9271296	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR++ monocyte %monocyte	3,595 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9271296-G	0.55558	4E-23		0.3033	[0.24-0.36] unit decrease	Illumina [18380843] (imputed)	N
615	chr6_ssto_hap7	4015271	4015272	rs1966002	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs1966002-T	0.454	8E-31		1.337	[1.29-1.39]	Illumina [11270530] (imputed)	N
615	chr6_ssto_hap7	4015475	4015476	rs4530903	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6p21.32		rs4530903-?	NR	9E-20		1.15592	[1.12-1.19]	NR [685523]	N
615	chr6_ssto_hap7	4015475	4015476	rs4530903	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs4530903-T	0.19	2E-8		4.08	[3.13-5.32]	Illumina [NR] (imputed)	N
615	chr6_ssto_hap7	4015475	4015476	rs4530903	23349640	Vijai J	2013-01-17	PLoS Genet	Susceptibility loci associated with specific and shared subtypes of lymphoid malignancies.	Lymphoma	275 Follicular non-Hodgkin's Lymphoma cases, 269 diffuse large B-cell non-Hodgkin's Lymphoma cases, 198 other non-Hodgkin's Lymphoma cases, 202 Hodgkin's Lymphoma cases, 4,044 controls	202 European ancestry Follicular non-Hodgkin's Lymphoma cases, 367 European ancestry diffuse large B-cell non-Hodgkin's Lymphoma cases, 577 European ancestry other non-Hodgkin's Lymphoma cases, 99 European ancestry Hodgkin's Lymphoma cases, 2,596 European ancestry controls	6p21.32	HLA-DRB5, HLA-DQA1	rs4530903-T	NR	3E-6	(LYM)	1.29	[1.16-1.43]	Affymetrix [530583]	N
615	chr6_ssto_hap7	4015475	4015476	rs4530903	23349640	Vijai J	2013-01-17	PLoS Genet	Susceptibility loci associated with specific and shared subtypes of lymphoid malignancies.	Lymphoma	275 Follicular non-Hodgkin's Lymphoma cases, 269 diffuse large B-cell non-Hodgkin's Lymphoma cases, 198 other non-Hodgkin's Lymphoma cases, 202 Hodgkin's Lymphoma cases, 4,044 controls	202 European ancestry Follicular non-Hodgkin's Lymphoma cases, 367 European ancestry diffuse large B-cell non-Hodgkin's Lymphoma cases, 577 European ancestry other non-Hodgkin's Lymphoma cases, 99 European ancestry Hodgkin's Lymphoma cases, 2,596 European ancestry controls	6p21.32	HLA-DRB5, HLA-DQA1	rs4530903-T	NR	3E-12	(FL)	1.93	[NR]	Affymetrix [530583]	N
615	chr6_ssto_hap7	4015475	4015476	rs4530903	23349640	Vijai J	2013-01-17	PLoS Genet	Susceptibility loci associated with specific and shared subtypes of lymphoid malignancies.	Lymphoma	275 Follicular non-Hodgkin's Lymphoma cases, 269 diffuse large B-cell non-Hodgkin's Lymphoma cases, 198 other non-Hodgkin's Lymphoma cases, 202 Hodgkin's Lymphoma cases, 4,044 controls	202 European ancestry Follicular non-Hodgkin's Lymphoma cases, 367 European ancestry diffuse large B-cell non-Hodgkin's Lymphoma cases, 577 European ancestry other non-Hodgkin's Lymphoma cases, 99 European ancestry Hodgkin's Lymphoma cases, 2,596 European ancestry controls	6p21.32	HLA-DRB5, HLA-DQA1	rs4530903-T	NR	2E-8	(NHL)	1.37	[1.23-1.54]	Affymetrix [530583]	N
615	chr6_ssto_hap7	4015475	4015476	rs4530903	23212062	Fanous AH	2012-12-01	Am J Psychiatry	Genome-wide association study of clinical dimensions of schizophrenia: polygenic effect on disorganized symptoms.	Schizophrenia	2,454 European ancestry cases	NA	6p21.32	HLA-DRB1, HLA-DQA1	rs4530903-?	NR	5E-6	(Negative/disorganized symptoms)	0.0919	[NR] unit increase	Affymetrix [696491]	N
615	chr6_ssto_hap7	4015508	4015509	rs522308	29521573	Buck D	2018-03-01	Mult Scler	Effect of HLA-DRB1 alleles and genetic variants on the development of neutralizing antibodies to interferon beta in the BEYOND and BENEFIT trials.	Neutralising antibody response to interferon beta therapy in multiple sclerosis (presence of antibodies)	361 European, Hispanic, Asian, African or unknown ancestry cases, 580 European, Hispanic, Asian, African or unknown ancestry controls	NA	6p21.32	intergenic	rs522308-T	0.25	2E-15		2.6	[2.05-3.29]	Affymetrix [8671751] (imputed)	N
615	chr6_ssto_hap7	4016068	4016069	rs9271324	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	Composite immunoglobulin trait (IgA x IgG x IgM)	14,183 Icelandic ancestry individuals	2,146 Swedish ancestry individuals	6p21.32	HLA-DQA1	rs9271324-G	0.2804	4E-19		0.11	NR SD units decrease	Illumina [21568490] (imputed)	N
615	chr6_ssto_hap7	4016099	4016100	rs9271325	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	6p21.32		rs9271325-?	NR	2E-8		0.00512579	[0.0033-0.0069] unit increase	NR [NR]	N
615	chr6_ssto_hap7	4016187	4016188	rs34656207	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	6p21.32		rs34656207-T	NR	1E-126		0.0477	[0.044-0.052] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
615	chr6_ssto_hap7	4016187	4016188	rs34656207	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	6p21.32	HLA-DRB1, HLA-DQA1	rs34656207-T	0.36	1E-111		22.4	z-score increase	Affymetrix [4314223] (imputed)	N
615	chr6_ssto_hap7	4016198	4016199	rs3104414	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DQA1	rs3104414-A	NR	9E-13		0.0232695	[0.017-0.03] unit decrease	Affymetrix [323123] (imputed)	N
615	chr6_ssto_hap7	4016198	4016199	rs3104414	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR+ T cell%T cell	3,596 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs3104414-A	0.35131	9E-9		0.1693	[0.11-0.23] unit increase	Illumina [18380873] (imputed)	N
615	chr6_ssto_hap7	4016198	4016199	rs3104414	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Chronic sinus infection	5,291 European ancestry cases, 79,622 European ancestry controls	NA	6p21.32	NR	rs3104414-?	NR	2E-6		0.104	[0.061-0.147] unit decrease	Illumina [at least 560000] (imputed)	N
615	chr6_ssto_hap7	4016236	4016237	rs3104413	26272072	Jiang X	2015-08-13	Rheumatology (Oxford)	An Immunochip-based interaction study of contrasting interaction effects with smoking in ACPA-positive versus ACPA-negative rheumatoid arthritis.	ACPA-positive rheumatoid arthritis (smoking interaction)	340 European ancestry never-smoker cases, 493 European ancestry ever-smoker cases, 746 European ancestry never-smoker controls, 994 European ancestry ever-smoker controls	187 European ancestry never-smoker cases, 421 European ancestry ever-smoker cases, 461 European ancestry never-smoker controls, 447 European ancestry ever-smoker controls	6p21.32	NR	rs3104413-?	NR	2E-10	(adjusted for HLA shared epitope)	1.7857143	[1.35-2.56]	Illumina [133648] (imputed)	N
615	chr6_ssto_hap7	4016236	4016237	rs3104413	25014791	Govind N	2014-08-14	Mol Med	Immunochip identifies novel, and replicates known, genetic risk loci for rheumatoid arthritis in black South Africans.	Rheumatoid arthritis	263 South African Black cases and 374 South African Black controls	NA	6p21.32	HLA-DRB1	rs3104413-?	NR	5E-21		3.88		Illumina [103770]	N
615	chr6_ssto_hap7	4016483	4016484	rs117356394	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PRSS8	5,356 Icelandic ancestry individuals	NA	6p21.32		rs117356394-G	0.01954	5E-13		0.472302	[0.34-0.6] unit increase	Illumina [7506463] (imputed)	N
615	chr6_ssto_hap7	4016483	4016484	rs117356394	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein BAGE3	5,360 Icelandic ancestry individuals	NA	6p21.32		rs117356394-G	0.01954	5E-13		0.48146	[0.35-0.61] unit increase	Illumina [7506463] (imputed)	N
615	chr6_ssto_hap7	4016591	4016592	rs6917212	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on CD33dim HLA DR+ CD11b-	1,635 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs6917212-G	0.76363	2E-23		0.4456	[0.36-0.53] unit decrease	Illumina [16999305] (imputed)	N
615	chr6_ssto_hap7	4016591	4016592	rs6917212	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on CD33dim HLA DR+ CD11b+	1,634 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs6917212-G	0.23621	2E-26		0.4813	[0.39-0.57] unit decrease	Illumina [16998734] (imputed)	N
615	chr6_ssto_hap7	4016591	4016592	rs6917212	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on CD14- CD16+ monocyte	3,621 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs6917212-G	0.77661	1E-48		0.476	[0.41-0.54] unit decrease	Illumina [18212658] (imputed)	N
615	chr6_ssto_hap7	4016591	4016592	rs6917212	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on CD14+ CD16+ monocyte	3,618 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs6917212-G	0.77656	4E-58		0.5221	[0.46-0.58] unit decrease	Illumina [18213821] (imputed)	N
615	chr6_ssto_hap7	4016632	4016633	rs3129754	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs3129754-G	NR	8E-13		0.020445	[0.015-0.026] unit increase	Affymetrix [319769] (imputed)	N
615	chr6_ssto_hap7	4016632	4016633	rs3129754	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs3129754-G	NR	2E-12		0.0200088	[0.014-0.026] unit increase	Affymetrix [319769] (imputed)	N
615	chr6_ssto_hap7	4016643	4016644	rs3129755	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs3129755-A	0.434675	3E-21		0.0380258	[0.03-0.046] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4016643	4016644	rs3129755	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	6p21.32		rs3129755-A	0.434675	1E-20		0.037327	[0.029-0.045] unit increase	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4016643	4016644	rs3129755	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	6p21.32		rs3129755-A	0.434675	2E-23		0.0397462	[0.032-0.048] unit increase	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4016745	4016746	rs4959106	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Interleukin-6 levels	21,758 European ancestry individuals	9,173 individuals	6p21.32		rs4959106-T	0.54	7E-13		0.0741	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
615	chr6_ssto_hap7	4016860	4016861	rs13208697	34785669	Grosche S	2021-11-16	Nat Commun	Rare variant analysis in eczema identifies exonic variants in DUSP1, NOTCH4 and SLC9A4.	Eczema	20,016 European ancestry cases, 380,433 European ancestry controls	NA	6p21.32		rs13208697-T	0.1461	7E-18		0.86		Affymetrix, Illumina [9397031] (imputed)	N
615	chr6_ssto_hap7	4016943	4016944	rs6931277	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Family history of Alzheimer's disease	47,793 European ancestry cases, 328,320 European ancestry controls	NA	6p21.32	HLA-DRB1	rs6931277-T	NR	2E-7		5.22	NR z-score decrease	Affymetrix [10847151] (imputed)	N
615	chr6_ssto_hap7	4016943	4016944	rs6931277	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	6p21.32	HLA-DRB1	rs6931277-T	0.153	8E-11		6.49	NR z-unit decrease	Affymetrix, Illumina [up to 10847151] (imputed)	N
615	chr6_ssto_hap7	4016943	4016944	rs6931277	26272072	Jiang X	2015-08-13	Rheumatology (Oxford)	An Immunochip-based interaction study of contrasting interaction effects with smoking in ACPA-positive versus ACPA-negative rheumatoid arthritis.	ACPA-positive rheumatoid arthritis (smoking interaction)	340 European ancestry never-smoker cases, 493 European ancestry ever-smoker cases, 746 European ancestry never-smoker controls, 994 European ancestry ever-smoker controls	187 European ancestry never-smoker cases, 421 European ancestry ever-smoker cases, 461 European ancestry never-smoker controls, 447 European ancestry ever-smoker controls	6p21.32	NR	rs6931277-?	NR	2E-10	(adjusted for HLA shared epitope)	1.7857143	[1.35-2.56]	Illumina [133648] (imputed)	N
615	chr6_ssto_hap7	4016987	4016988	rs7760731	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p21.32	HLA-DQA1	rs7760731-C	0.642	6E-11		0.087	[0.062-0.112] unit increase	Affymetrix, Illumina [7374092] (imputed)	N
615	chr6_ssto_hap7	4017063	4017064	rs28383223	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	6p21.32	HLA-DRB1, HLA-DQA1	rs28383223-T	0.58	7E-38		12.9	z-score increase	Affymetrix [4312306] (imputed)	N
615	chr6_ssto_hap7	4017090	4017091	rs114991247	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Growth-regulated protein alpha levels	3,505 Finnish ancestry individuals	NA	6p21.32	NR	rs114991247-C		8E-6		0.2092	[0.12-0.3] SD units increase	NR [10700000] (imputed)	N
615	chr6_ssto_hap7	4017239	4017240	rs28383224	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs28383224-A	NR	4E-20		0.0262329	[0.021-0.032] unit decrease	Affymetrix [319769] (imputed)	N
615	chr6_ssto_hap7	4017239	4017240	rs28383224	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs28383224-A	NR	1E-19		0.0258764	[0.02-0.031] unit decrease	Affymetrix [319769] (imputed)	N
615	chr6_ssto_hap7	4017239	4017240	rs28383224	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs28383224-A	NR	9E-10		0.0176752	[0.012-0.023] unit decrease	Affymetrix [321114] (imputed)	N
615	chr6_ssto_hap7	4017239	4017240	rs28383224	29769526	Estrada K	2018-05-16	Nat Commun	A whole-genome sequence study identifies genetic risk factors for neuromyelitis optica.	Neuromyelitis optica (AQP4-IgG-positive)	66 European ancestry cases, 784 European ancestry controls	66 European ancestry cases, 460 European ancestry controls	6p21.32	HLA-DQA1	rs28383224-A	0.42	8E-11		2.66	[1.98-3.56]	Affymetrix [6804788] (imputed)	N
615	chr6_ssto_hap7	4017239	4017240	rs28383224	29769526	Estrada K	2018-05-16	Nat Commun	A whole-genome sequence study identifies genetic risk factors for neuromyelitis optica.	Neuromyelitis optica	66 European ancestry AQP4-IgG antibody seropositive cases, 63 European ancestry AQP4-IgG antibody seronegative cases, 784 European ancestry controls	66 European ancestry AQP4-IgG antibody seropositive cases, 20 European ancestry AQP4-IgG antibody seronegative cases, 460 European ancestry controls	6p21.32	HLA-DQA1	rs28383224-A	0.42	6E-12		2.24	[1.78-2.82]	Affymetrix [6804788] (imputed)	N
615	chr6_ssto_hap7	4017328	4017329	rs9271348	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein KCNE2	5,364 Icelandic ancestry individuals	NA	6p21.32		rs9271348-G	0.3219	7E-13		0.143439	[0.1-0.18] unit decrease	Illumina [7506463] (imputed)	N
615	chr6_ssto_hap7	4017328	4017329	rs9271348	24532677	Bossini-Castillo L	2014-02-14	Ann Rheum Dis	A genome-wide association study of rheumatoid arthritis without antibodies against citrullinated peptides.	Rheumatoid arthritis (ACPA-negative)	1,148 European ancestry cases, 6,008 European ancestry controls	774 European ancestry cases, 1,079 European ancestry controls	6p21.32	HLA-DRB1, HLA-DQA1	rs9271348-?		5E-7		1.2821	[NR]	Illumina [452367]	N
615	chr6_ssto_hap7	4017399	4017400	rs1846190	34493870	Wightman DP	2021-09-07	Nat Genet	A genome-wide association study with 1,126,563 individuals identifies new risk loci for Alzheimer's disease.	Late-onset Alzheimer's disease	90,338 cases, 1,036,225 controls	NA	6p21.32		rs1846190-?	NR	3E-14				Illumina [NR] (imputed)	N
615	chr6_ssto_hap7	4017416	4017417	rs9271349	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs9271349-A	NR	4E-9		0.0217606	[0.015-0.029] unit decrease	Affymetrix [321169] (imputed)	N
615	chr6_ssto_hap7	4017466	4017467	rs112430285	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	6p21.32	NR	rs112430285-?	NR	8E-12				Affymetrix [~ 8270000] (imputed)	N
615	chr6_ssto_hap7	4017569	4017570	rs33915496	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	89,266 East Asian ancestry individuals	NA	6p21.32	NR	rs33915496-A	0.543315	1E-16		0.039594	[0.03-0.049] SD units increase	Affymetrix, Illumina [16289068] (imputed)	N
615	chr6_ssto_hap7	4017583	4017584	rs28383228	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs28383228-A	0.135	4E-18	(Interleukin-21, IL21.7124.18.3)	0.34	[0.26-0.42] unit increase	Affymetrix [10572788] (imputed)	N
615	chr6_ssto_hap7	4017583	4017584	rs28383228	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs28383228-A	0.135	3E-35	(Ubiquitin carboxyl-terminal hydrolase 25, USP25.9215.117.3)	0.48	[0.4-0.56] unit increase	Affymetrix [10572788] (imputed)	N
615	chr6_ssto_hap7	4017583	4017584	rs28383228	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs28383228-A	0.135	2E-16	(MHC class I polypeptide-related sequence B, MICB.5102.55.3)	0.32	[0.24-0.4] unit increase	Affymetrix [10572788] (imputed)	N
615	chr6_ssto_hap7	4017743	4017744	rs28383233	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	6p21.32		rs28383233-G	0.418462	4E-14		0.029595	[0.022-0.037] unit increase	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4017781	4017782	rs34077986	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs34077986-C	NR	5E-11		0.0189538	[0.013-0.025] unit increase	Affymetrix [321169] (imputed)	N
615	chr6_ssto_hap7	4017905	4017906	rs33932178	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	95,717 East Asian ancestry individuals	NA	6p21.32		rs33932178-G	0.449956	3E-22		0.0431265	[0.034-0.052] unit decrease	Illumina [13471431] (imputed)	N
615	chr6_ssto_hap7	4017911	4017912	rs28383241	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	6p21.32		rs28383241-A	NR	9E-40		0.0249	[0.021-0.029] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
615	chr6_ssto_hap7	4017963	4017964	rs34694416	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Basal cell carcinoma	31,787 European ancestry cases, 619,351 European ancestry controls	NA	6p21.32	HLA-DQA1	rs34694416-T	0.116415	8E-23		1.14	[1.11-1.16]	Affymetrix, Illumina [up to 9061544] (imputed)	N
615	chr6_ssto_hap7	4018171	4018172	rs73730372	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR++ monocyte %monocyte	3,595 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs73730372-T	0.20013	2E-10		0.2818	[0.2-0.37] unit decrease	Illumina [18380843] (imputed)	N
615	chr6_ssto_hap7	4018171	4018172	rs73730372	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs73730372-?	NR	9E-26				Affymetrix [~ 8270000] (imputed)	N
615	chr6_ssto_hap7	4018171	4018172	rs73730372	27285765	Chen D	2016-06-07	Oncotarget	Pooled analysis of genome-wide association studies of cervical intraepithelial neoplasia 3 (CIN3) identifies a new susceptibility locus.	Cervical cancer	1,553 Swedish ancestry cervical intraepithelial neoplasia grade 3 cases, 81 Swedish ancestry cervical cancer cases,  4,442 Swedish ancestry controls	827 Swedish ancestry cervical intraepithelial neoplasia grade 3 cases, 123 Swedish ancestry cervical cancer cases, 1,715 European ancestry controls	6p21.32	intergenic	rs73730372-?		3E-19		1.67	[1.49-1.85]	Illumina [5471179]	N
615	chr6_ssto_hap7	4018199	4018200	rs3129757	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Cathepsin L1 levels	21,758 European ancestry individuals	9,173 individuals	6p21.32		rs3129757-A	0.15	9E-17		0.0997	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
615	chr6_ssto_hap7	4018329	4018330	rs28752520	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs28752520-C	0.227	4E-23	(Complement C4, C4A.C4B.4481.34.2)	0.31	[0.25-0.37] unit increase	Affymetrix [10572788] (imputed)	N
615	chr6_ssto_hap7	4018362	4018363	rs28752523	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	6p21.32		rs28752523-C	0.806174	2E-12		0.0353026	[0.025-0.045] unit increase	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4018362	4018363	rs28752523	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to omega-3 fatty acids	115,006 European ancestry individuals	NA	6p21.32		rs28752523-C	0.806174	4E-8		0.0275581	[0.018-0.037] unit increase	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4018362	4018363	rs28752523	33204752	Butler-Laporte G	2020-09-24	Open Forum Infect Dis	Genetic Determinants of Antibody-Mediated Immune Responses to Infectious Diseases Agents: A Genome-Wide and HLA Association Study.	Human herpes virus 6 IE1A antibody levels	6,968 White British ancestry individuals	NA	6p21.32	HLA-DQA1	rs28752523-C	0.806	8E-9		0.12	[0.079-0.161] unit decrease	NR [25472218] (imputed)	N
615	chr6_ssto_hap7	4018470	4018471	rs73730377	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FAS	5,367 Icelandic ancestry individuals	NA	6p21.32		rs73730377-G	0.179	9E-13		0.172154	[0.12-0.22] unit increase	Illumina [7506463] (imputed)	N
615	chr6_ssto_hap7	4018470	4018471	rs73730377	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.32	NR	rs73730377-?	NR	2E-23				Affymetrix [~ 8270000] (imputed)	N
615	chr6_ssto_hap7	4018662	4018663	rs28752534	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	6p21.32		rs28752534-T	0.699585	3E-10		0.0269354	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4018662	4018663	rs28752534	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	6p21.32		rs28752534-T	0.699588	5E-10		0.0255499	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4018662	4018663	rs28752534	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p21.32	HLA-DRB3	rs28752534-T	0.64	2E-30		1.11	[1.1-1.13] unit increase	Illumina [at least 560000] (imputed)	N
615	chr6_ssto_hap7	4018864	4018865	rs200675567	31577861	Dai J	2019-10-31	Int J Cancer	Genome-wide association study of INDELs identified four novel susceptibility loci associated with lung cancer risk.	Lung cancer	20,871 European ancestry cases, 15,971 European ancestry controls, 2,331 Chinese ancestry cases, 3,077 Chinese ancestry controls	NA	6p21.32	HLA-DQA1	rs200675567-D	0.11	4E-7		0.9	[0.86-0.96]	Illumina [484196]	N
615	chr6_ssto_hap7	4019233	4019234	rs28383254	29903748	Debiec H	2018-06-14	J Am Soc Nephrol	Transethnic, Genome-Wide Analysis Reveals Immune-Related Risk Alleles and Phenotypic Correlates in Pediatric Steroid-Sensitive Nephrotic Syndrome.	Childhood steroid-sensitive nephrotic syndrome	85 Maghrebian cases, 261 Maghrebian controls	NA	6p21.32	HLA-DRB1, HLA-DQA1	rs28383254-?	NR	3E-8		5.7	[3.1-10.6]	Illumina [at least 7529344] (imputed)	N
615	chr6_ssto_hap7	4019496	4019497	rs28383264	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs28383264-T	0.201	1E-12	(Hepatocyte nuclear factor 4-alpha, HNF4A.10041.3.3)	0.24	[0.18-0.3] unit increase	Affymetrix [10572788] (imputed)	N
615	chr6_ssto_hap7	4019562	4019563	rs3104412	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	6p21.32	NR	rs3104412-?	NR	1E-142	(conditional)			Affymetrix [15688218] (imputed)	N
615	chr6_ssto_hap7	4019614	4019615	rs3135005	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	6p21.32	NR	rs3135005-?	NR	2E-9		5.995	NR z score decrease	Illumina [at least 830937] (imputed)	N
615	chr6_ssto_hap7	4019753	4019754	rs70993900	30230522	Zhang S	2018-09-19	Br J Dermatol	Subtype-Specific Inherited Predisposition to Pemphigus in Chinese Population.	Pemphigus vulgaris	255 Chinese ancestry cases, 501 Chinese ancestry controls	110 Chinese ancestry cases, 604 Chinese ancestry controls	6p21.32	NR	rs70993900-?	0.09	1E-45		18.57	NR	Affymetrix [416397]	N
615	chr6_ssto_hap7	4019753	4019754	rs70993900	30230522	Zhang S	2018-09-19	Br J Dermatol	Subtype-Specific Inherited Predisposition to Pemphigus in Chinese Population.	Pemphigus	350 Chinese ancestry cases, 501 Chinese ancestry controls	146 Chinese ancestry cases, 604 Chinese ancestry controls	6p21.32	NR	rs70993900-?	0.09	1E-43		10.92	NR	Affymetrix [416397]	N
615	chr6_ssto_hap7	4019831	4019832	rs11751024	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	6p21.32		rs11751024-C	0.601399	2E-18		0.0366905	[0.028-0.045] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4019831	4019832	rs11751024	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	CAG-882 sp003486385 abundance in stool	5,959 Finnish ancestry individuals	NA	6p21.32		rs11751024-A	0.400705	5E-8		0.104999	[0.067-0.143] unit increase	Illumina [7980478] (imputed)	N
615	chr6_ssto_hap7	4019831	4019832	rs11751024	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TGM3	5,368 Icelandic ancestry individuals	NA	6p21.32		rs11751024-A	0.3876	6E-13		0.141161	[0.1-0.18] unit decrease	Illumina [7506463] (imputed)	N
615	chr6_ssto_hap7	4019831	4019832	rs11751024	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.32	NR	rs11751024-?	NR	5E-24				Affymetrix [~ 8270000] (imputed)	N
615	chr6_ssto_hap7	4019831	4019832	rs11751024	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs11751024-?	NR	9E-35				Affymetrix [~ 8270000] (imputed)	N
615	chr6_ssto_hap7	4019971	4019972	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	VLDL cholesterol levels	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	7E-27		0.0483058	[0.039-0.057] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4019971	4019972	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total phospholipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	3E-13		0.0313476	[0.023-0.04] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4019971	4019972	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small LDL	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	9E-20		0.0410279	[0.032-0.05] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4019971	4019972	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium VLDL	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	2E-27		0.0484871	[0.04-0.057] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4019971	4019972	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium LDL	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	8E-20		0.0412131	[0.032-0.05] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4019971	4019972	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	2E-19		0.0399601	[0.031-0.049] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4019971	4019972	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in LDL	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	9E-17		0.0374103	[0.029-0.046] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4019971	4019972	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total free cholesterol levels	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	8E-17		0.036746	[0.028-0.045] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4019971	4019972	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol minus HDL-C levels	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	4E-18		0.038935	[0.03-0.048] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4019971	4019972	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Polyunsaturated fatty acid levels	115,006 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665908	4E-22		0.0423547	[0.034-0.051] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4019971	4019972	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	2E-28		0.0496534	[0.041-0.058] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4019971	4019972	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small LDL	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	1E-16		0.0372035	[0.028-0.046] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4019971	4019972	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium VLDL	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	4E-27		0.0485352	[0.04-0.057] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4019971	4019972	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium LDL	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	2E-18		0.0396392	[0.031-0.048] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4019971	4019972	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-6 fatty acid levels	115,006 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665908	3E-21		0.0416405	[0.033-0.05] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4019971	4019972	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Linoleic acid levels	115,006 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665908	1E-22		0.0433006	[0.035-0.052] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4019971	4019972	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	9E-26		0.0473496	[0.039-0.056] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4019971	4019972	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	8E-26		0.0473724	[0.039-0.056] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4019971	4019972	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small LDL particles	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	2E-20		0.0419422	[0.033-0.051] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4019971	4019972	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium VLDL particles	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	4E-27		0.0485075	[0.04-0.057] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4019971	4019972	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium LDL particles	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	6E-19		0.0402296	[0.031-0.049] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4019971	4019972	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of VLDL particles	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	7E-27		0.0480395	[0.039-0.057] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4019971	4019972	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	8E-28		0.0491721	[0.04-0.058] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4019971	4019972	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small LDL	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	6E-22		0.043478	[0.035-0.052] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4019971	4019972	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium LDL	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	2E-21		0.0430313	[0.034-0.052] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4019971	4019972	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in LDL	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	6E-18		0.0389019	[0.03-0.048] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4019971	4019972	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	2E-27		0.0488991	[0.04-0.058] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4019971	4019972	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small LDL	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	6E-19		0.0401589	[0.031-0.049] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4019971	4019972	rs11755689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	6p21.32		rs11755689-A	0.665857	3E-19		0.0405703	[0.032-0.049] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4019977	4019978	rs61126090	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Terminally Differentiated CD4-CD8- T cell Absolute Count	3,395 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs61126090-G	0.19907	1E-12		0.2671	[0.19-0.34] unit decrease	Illumina [18332267] (imputed)	N
615	chr6_ssto_hap7	4019978	4019979	rs28383283	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Terminally Differentiated CD4-CD8- T cell %T cell	3,427 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs28383283-T	0.2651	1E-9		0.2109	[0.14-0.28] unit decrease	Illumina [18349913] (imputed)	N
615	chr6_ssto_hap7	4020350	4020351	rs28383307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large HDL	115,082 European ancestry individuals	NA	6p21.32		rs28383307-C	0.805689	2E-9		0.0282931	[0.019-0.037] unit increase	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4020350	4020351	rs28383307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large HDL	115,082 European ancestry individuals	NA	6p21.32		rs28383307-C	0.805689	3E-9		0.0277214	[0.019-0.037] unit increase	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4020350	4020351	rs28383307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	6p21.32		rs28383307-C	0.805689	8E-11		0.0304025	[0.021-0.04] unit increase	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4020350	4020351	rs28383307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	6p21.32		rs28383307-C	0.805689	6E-9		0.026858	[0.018-0.036] unit increase	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4020350	4020351	rs28383307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	6p21.32		rs28383307-C	0.805689	2E-11		0.0315135	[0.022-0.041] unit increase	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4020377	4020378	rs28383308	33768542	Liu Y	2021-03-26	Clin Pharmacol Ther	Class II HLA Variants Associate with Risk of Pegaspargase Hypersensitivity.	Asparaginase hypersensitivity in acute lymphoblastic leukemia	2,290 European ancestry individuals, 310 African ancestry individuals, 798 Native American individuals, 112 Asian ancestry individuals, 387 individuals	NA	6p21.32	HLA-DQA1	rs28383308-T	NR	5E-14		1.95	[NR]	Affymetrix, Illumina [NR] (imputed)	N
615	chr6_ssto_hap7	4020389	4020390	rs9271365	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hypothyroidism	30,155 European ancestry cases, 379,986 European ancestry controls, 1,114 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	6p21.32		rs9271365-G	NR	5E-123		0.2484	[0.23-0.27] unit increase	Affymetrix, Illumina [25801083] (imputed)	N
615	chr6_ssto_hap7	4020389	4020390	rs9271365	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hashimoto thyroiditis	15,654 European ancestry cases, 379,986 European ancestry controls, 537 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	6p21.32		rs9271365-G	NR	1E-39		0.2531	[0.22-0.29] unit increase	Affymetrix, Illumina [25797652] (imputed)	N
615	chr6_ssto_hap7	4020389	4020390	rs9271365	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	6p21.32	NR	rs9271365-?	NR	7E-35				Affymetrix [~ 8270000] (imputed)	N
615	chr6_ssto_hap7	4020426	4020427	rs13191810	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium VLDL	115,082 European ancestry individuals	NA	6p21.32		rs13191810-C	0.687691	5E-25		0.0445033	[0.036-0.053] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4020426	4020427	rs13191810	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs13191810-C	0.687691	2E-21		0.040583	[0.032-0.049] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4020426	4020427	rs13191810	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs13191810-C	0.687691	3E-22		0.0414982	[0.033-0.05] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4020426	4020427	rs13191810	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs13191810-C	0.687691	5E-24		0.0433674	[0.035-0.052] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4020426	4020427	rs13191810	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs13191810-C	0.687691	3E-16		0.0350026	[0.027-0.043] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4020426	4020427	rs13191810	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	6p21.32		rs13191810-C	0.687723	6E-17		0.0344759	[0.026-0.043] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4020426	4020427	rs13191810	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs13191810-C	0.687691	1E-22		0.0419227	[0.034-0.05] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4020426	4020427	rs13191810	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs13191810-C	0.687691	3E-24		0.0434772	[0.035-0.052] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4020426	4020427	rs13191810	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs13191810-C	0.687691	7E-17		0.0354956	[0.027-0.044] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4020426	4020427	rs13191810	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-3 fatty acid levels	115,006 European ancestry individuals	NA	6p21.32		rs13191810-C	0.687723	5E-14		0.0321812	[0.024-0.041] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4020426	4020427	rs13191810	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs13191810-C	0.687691	5E-25		0.0444045	[0.036-0.053] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4020426	4020427	rs13191810	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large VLDL particles	115,082 European ancestry individuals	NA	6p21.32		rs13191810-C	0.687691	2E-22		0.0414621	[0.033-0.05] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4020426	4020427	rs13191810	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large VLDL particles	115,082 European ancestry individuals	NA	6p21.32		rs13191810-C	0.687691	9E-24		0.0430671	[0.035-0.051] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4020426	4020427	rs13191810	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of chylomicrons and extremely large VLDL particles	115,082 European ancestry individuals	NA	6p21.32		rs13191810-C	0.687691	2E-16		0.0351965	[0.027-0.044] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4020426	4020427	rs13191810	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	6p21.32		rs13191810-C	0.687691	1E-8		0.0223672	[0.015-0.03] unit increase	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4020426	4020427	rs13191810	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for VLDL particles	115,082 European ancestry individuals	NA	6p21.32		rs13191810-C	0.687691	4E-18		0.0359074	[0.028-0.044] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4020426	4020427	rs13191810	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.32	Intergenic	rs13191810-T	NR	1E-6	(men)	0.0240553	[0.014-0.034] unit decrease	Illumina [13520550] (imputed)	N
615	chr6_ssto_hap7	4020449	4020450	rs9271366	26278503	Huang C	2015-11-01	Gastroenterology	Characterization of genetic loci that affect susceptibility to inflammatory bowel diseases in African Americans.	Ulcerative colitis	361 African American cases, 1,797 African American controls	NA	6p21.32	HLA-DQA1	rs9271366-A	NR	7E-6		1.627	[1.315-2.013]	Illumina [130241]	N
615	chr6_ssto_hap7	4020449	4020450	rs9271366	23850713	Yang SK	2013-07-14	Gut	Genome-wide association study of Crohn's disease in Koreans revealed three new susceptibility loci and common attributes of genetic susceptibility across ethnic populations.	Crohn's disease	532 Korean ancestry cases, 733 Korean ancestry controls	1,779 Korean ancestry cases, 1,709 Korean ancestry controls	6p21.32	HLA-DRA, HLA-DRB5, BTNL2, HLA-DRB1, HLA-DQA1	rs9271366-A	0.888	5E-12		1.66	[1.44-1.92]	Illumina [5664371] (imputed)	N
615	chr6_ssto_hap7	4020449	4020450	rs9271366	23511034	Yang SK	2013-04-01	Inflamm Bowel Dis	Genome-wide association study of ulcerative colitis in Koreans suggests extensive overlapping of genetic susceptibility with Caucasians.	Ulcerative colitis	388 Korean ancestry cases, 739 Korean ancestry controls	417 Korean ancestry cases, 732 Korean ancestry controls	6p21.32	HLA-DRB1, HLA-DQA1	rs9271366-G	0.11	1E-18		2.1	[1.78-2.48]	Illumina [581060]	N
615	chr6_ssto_hap7	4020449	4020450	rs9271366	21699788	Okada Y	2011-06-20	Gastroenterology	HLA-Cw*1202-B*5201-DRB1*1502 haplotype increases risk for ulcerative colitis but reduces risk for Crohn's disease.	Ulcerative colitis or Crohn's disease	372 Japanese ancestry Crohn's disease cases, 372 Japanese ancestry ulcerative colitis cases	607 Japanese ancestry Crohn's disease cases, 376 Japanese ancestry ulcerative colitis cases	6p21.32	MHC, HLA-DRB1	rs9271366-C	0.21	2E-70	(UC vs. CD)	4.44	[3.74-5.27]	Illumina [461368]	N
615	chr6_ssto_hap7	4020449	4020450	rs9271366	20694011	Ferreira RC	2010-08-08	Nat Genet	Association of IFIH1 and other autoimmunity risk alleles with selective IgA deficiency.	Immunoglobulin A	430 European ancestry cases, 1,090 European ancestry controls	342 European ancestry cases, 886 European ancestry controls	6p21.32	HLA-DRB1	rs9271366-?	0.85	3E-33		7.69	[5.26-11.11]	Illumina [2057134] (imputed)	N
615	chr6_ssto_hap7	4020449	4020450	rs9271366	20598377	Nischwitz S	2010-06-30	J Neuroimmunol	Evidence for VAV2 and ZNF433 as susceptibility genes for multiple sclerosis.	Multiple sclerosis	590 European ancestry cases, 825 European ancestry controls	NA	6p21.32	DQA1	rs9271366-G	NR	4E-17		2.62	[2.09-3.28]	Illumina [~ 300000]	N
615	chr6_ssto_hap7	4020449	4020450	rs9271366	19838195	Gateva V	2009-11-01	Nat Genet	A large-scale replication study identifies TNIP1, PRDM1, JAZF1, UHRF1BP1 and IL10 as risk loci for systemic lupus erythematosus.	Systemic lupus erythematosus	1,310 European ancestry cases, 7,859 European ancestry controls	1,963 European ancestry cases, 4,329 European ancestry controls	6p21.32	HLA-DRB1	rs9271366-G	0.16	1E-7		1.26	[1.18-1.36]	Illumina [~ 2100000] (imputed)	N
615	chr6_ssto_hap7	4020449	4020450	rs9271366	19525955	Bahlo M	2009-06-14	Nat Genet	Genome-wide association study identifies new multiple sclerosis susceptibility loci on chromosomes 12 and 20.	Multiple sclerosis	1,618 European ancestry cases, 3,413 European ancestry controls	2,256 European ancestry cases, 2,310 European ancestry controls	6p21.32	HLA-DRB1	rs9271366-G	0.15	7E-184		2.78	[NR]	Illumina [302098]	N
615	chr6_ssto_hap7	4020503	4020504	rs9271367	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on plasmacytoid Dendritic Cell	2,872 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9271367-A	0.85909	2E-29		0.5463	[0.45-0.64] unit decrease	Illumina [17926607] (imputed)	N
615	chr6_ssto_hap7	4020503	4020504	rs9271367	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on myeloid Dendritic Cell	2,872 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9271367-A	0.85909	3E-35		0.5882	[0.5-0.68] unit decrease	Illumina [17926605] (imputed)	N
615	chr6_ssto_hap7	4020503	4020504	rs9271367	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on Dendritic Cell	2,871 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9271367-A	0.85909	4E-32		0.5586	[0.47-0.65] unit decrease	Illumina [17926566] (imputed)	N
615	chr6_ssto_hap7	4020503	4020504	rs9271367	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on CD33- HLA DR+	1,635 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9271367-A	0.85909	2E-12		0.4146	[0.3-0.53] unit decrease	Illumina [16999305] (imputed)	N
615	chr6_ssto_hap7	4020593	4020594	rs607929	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	6p21.32	intergenic	rs607929-G	0.4428	4E-9		0.02092051	[0.014-0.028] unit increase	Affymetrix [~ 2500000] (imputed)	N
615	chr6_ssto_hap7	4020662	4020663	rs9271375	35074870	Chia R	2022-02-01	Proc Natl Acad Sci U S A	Identification of genetic risk loci and prioritization of genes and pathways for myasthenia gravis: a genome-wide association study.	Late-onset myasthenia gravis	1,278 European ancestry cases, 33,652 European ancestry controls	308 European ancestry cases, 7,056 European ancestry controls	6p21.32		rs9271375-A	0.481	2E-19		0.66	[0.6-0.72]	Illumina [24006246] (imputed)	N
615	chr6_ssto_hap7	4020662	4020663	rs9271375	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Urolithiasis	6,223 European ancestry cases, 482,123 European ancestry controls, 11,699 East Asian ancestry cases, 167,027 East Asian ancestry controls	NA	6p21.32		rs9271375-A	NR	5E-11		0.0785	[0.055-0.102] unit decrease	Affymetrix, Illumina [25845211] (imputed)	N
615	chr6_ssto_hap7	4020752	4020753	rs28688825	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	6p21.32	NR	rs28688825-?	NR	1E-28				Affymetrix [~ 8270000] (imputed)	N
615	chr6_ssto_hap7	4020752	4020753	rs28688825	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs28688825-?	NR	9E-24				Affymetrix [~ 8270000] (imputed)	N
615	chr6_ssto_hap7	4020752	4020753	rs28688825	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	6p21.32	AGER, AGPAT1, BRD2, BTNL2, C6orf10, EGFL8, GPSM3, HCG23, HLA-DMA, HLA-DMB, HLA-DOB, HLA-DQA1, HLA-DQA2, HLA-DQB1, HLA-DQB2, HLA-DRA, HLA-DRB1, HLA-DRB5, HLA-DRB6, LOC100294145, MIR6721, MIR6833, NOTCH4, PBX2, PPT2-EGFL8, PSMB8, PSMB9, RNF5, RNF5P1, TAP1, TAP2, TAPSAR1	rs28688825-A	0.883307	5E-31		1.1379826	[1.12-1.16]	Affymetrix [8274727] (imputed)	N
615	chr6_ssto_hap7	4020808	4020809	rs28383314	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	6p21.32		rs28383314-T	0.377043	8E-21		0.0374324	[0.03-0.045] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4020808	4020809	rs28383314	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	6p21.32		rs28383314-T	0.377036	7E-12		0.0274798	[0.02-0.035] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4020808	4020809	rs28383314	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs28383314-T	0.377036	2E-25		0.043251	[0.035-0.051] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4020808	4020809	rs28383314	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large HDL	115,082 European ancestry individuals	NA	6p21.32		rs28383314-T	0.377036	6E-13		0.0298794	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4020808	4020809	rs28383314	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs28383314-T	0.377036	2E-27		0.0445853	[0.037-0.053] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4020808	4020809	rs28383314	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small HDL	115,082 European ancestry individuals	NA	6p21.32		rs28383314-T	0.377036	4E-24		0.0415957	[0.034-0.05] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4020808	4020809	rs28383314	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium HDL	115,082 European ancestry individuals	NA	6p21.32		rs28383314-T	0.377036	2E-21		0.0397131	[0.032-0.048] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4020808	4020809	rs28383314	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large HDL	115,082 European ancestry individuals	NA	6p21.32		rs28383314-T	0.377036	4E-8		0.0221728	[0.014-0.03] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4020808	4020809	rs28383314	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in VLDL	115,082 European ancestry individuals	NA	6p21.32		rs28383314-T	0.377036	9E-23		0.0401294	[0.032-0.048] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4020808	4020809	rs28383314	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in HDL	115,082 European ancestry individuals	NA	6p21.32		rs28383314-T	0.377036	8E-21		0.0389843	[0.031-0.047] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4020808	4020809	rs28383314	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total triglycerides levels	115,082 European ancestry individuals	NA	6p21.32		rs28383314-T	0.377036	8E-24		0.0412963	[0.033-0.049] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4020808	4020809	rs28383314	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small HDL	115,082 European ancestry individuals	NA	6p21.32		rs28383314-T	0.377036	5E-22		0.0409595	[0.033-0.049] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4020808	4020809	rs28383314	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total fatty acid levels	115,006 European ancestry individuals	NA	6p21.32		rs28383314-T	0.377051	4E-25		0.0434702	[0.035-0.052] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4020808	4020809	rs28383314	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Saturated fatty acid levels	115,006 European ancestry individuals	NA	6p21.32		rs28383314-T	0.377051	4E-20		0.0385885	[0.03-0.047] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4020808	4020809	rs28383314	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6p21.32		rs28383314-T	0.377036	9E-13		0.0304107	[0.022-0.039] unit increase	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4020808	4020809	rs28383314	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	6p21.32		rs28383314-T	0.377036	1E-11		0.0288571	[0.021-0.037] unit increase	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4020808	4020809	rs28383314	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small HDL	115,082 European ancestry individuals	NA	6p21.32		rs28383314-T	0.377036	8E-22		0.0405037	[0.032-0.049] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4020808	4020809	rs28383314	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	6p21.32		rs28383314-T	0.377036	6E-17		0.0342966	[0.026-0.042] unit increase	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4020808	4020809	rs28383314	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	6p21.32		rs28383314-C	NR	4E-59		0.0343	[0.03-0.038] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
615	chr6_ssto_hap7	4020808	4020809	rs28383314	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	6p21.32		rs28383314-C	NR	9E-101		0.0363	[0.033-0.04] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
615	chr6_ssto_hap7	4020808	4020809	rs28383314	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.32		rs28383314-T	0.375	6E-103				Affymetrix [10369434] (imputed)	N
615	chr6_ssto_hap7	4020808	4020809	rs28383314	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DQA1	rs28383314-T	NR	2E-12		0.0225613	[0.016-0.029] unit decrease	Affymetrix [323858] (imputed)	N
615	chr6_ssto_hap7	4020808	4020809	rs28383314	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	HLA-DQA1	rs28383314-T	NR	4E-11		0.0212936	[0.015-0.028] unit decrease	Affymetrix [127266] (imputed)	N
615	chr6_ssto_hap7	4020808	4020809	rs28383314	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DQA1	rs28383314-T	NR	5E-19		0.0281171	[0.022-0.034] unit increase	Affymetrix [323123] (imputed)	N
615	chr6_ssto_hap7	4020808	4020809	rs28383314	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs28383314-T	NR	1E-20		0.027344	[0.022-0.033] unit decrease	Affymetrix [321169] (imputed)	N
615	chr6_ssto_hap7	4020808	4020809	rs28383314	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	6p21.32	NR	rs28383314-C	0.637389	2E-194				Affymetrix, Illumina [19872809] (imputed)	N
615	chr6_ssto_hap7	4020808	4020809	rs28383314	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	6p21.32	NR	rs28383314-C	0.624131	6E-199		0.061635	[0.058-0.066] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
615	chr6_ssto_hap7	4020808	4020809	rs28383314	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	6p21.32	HLA-DQA1	rs28383314-T	0.375891	4E-76		0.0378536	[0.034-0.042] unit decrease	Affymetrix [NR] (imputed)	N
615	chr6_ssto_hap7	4020808	4020809	rs28383314	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	6p21.32	LINC00336	rs28383314-?	NR	4E-49		0.0398	[0.035-0.045] unit decrease	Affymetrix [5701386] (imputed)	N
615	chr6_ssto_hap7	4020808	4020809	rs28383314	30643255	Kristjansson RP	2019-01-14	Nat Genet	A loss-of-function variant in ALOX15 protects against nasal polyps and chronic rhinosinusitis.	Nasal polyps	86 European ancestry whole-genome sequenced cases, 4,280 European ancestry cases, 13,941 European ancestry whole-genome sequenced controls, 700,740 European ancestry controls	NA	6p21.32	intergenic	rs28383314-C	0.630	5E-8		1.14	[1.09-1.19]	Affymetrix, Illumina [up to 37123566] (imputed)	N
615	chr6_ssto_hap7	4020808	4020809	rs28383314	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	6p21.32	HLA-DQA1	rs28383314-T	0.377	3E-9		0.086	[0.059-0.113] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
615	chr6_ssto_hap7	4020808	4020809	rs28383314	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	6p21.32	intergenic	rs28383314-C	0.6172	9E-64		0.06028895	[0.053-0.067] unit increase	Affymetrix [~ 2500000] (imputed)	N
615	chr6_ssto_hap7	4020808	4020809	rs28383314	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	6p21.32	intergenic	rs28383314-C	0.6171	7E-27		0.03829286	[0.031-0.045] unit increase	Affymetrix [~ 2500000] (imputed)	N
615	chr6_ssto_hap7	4020808	4020809	rs28383314	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	6p21.32	intergenic	rs28383314-C	0.6172	1E-60		0.05870737	[0.052-0.066] unit increase	Affymetrix [~ 2500000] (imputed)	N
615	chr6_ssto_hap7	4020874	4020875	rs144934262	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on CD33+ HLA DR+ CD14-	1,579 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs144934262-T	0.05991	2E-10		0.5304	[0.37-0.69] unit increase	Illumina [16961968] (imputed)	N
615	chr6_ssto_hap7	4021052	4021053	rs9271393	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Peripheral artery disease	7,114 European ancestry cases, 475,964 European ancestry controls, 4,112 East Asian ancestry cases, 173,601 East Asian ancestry controls	NA	6p21.32		rs9271393-C	NR	2E-8		0.116	[0.075-0.157] unit increase	Affymetrix, Illumina [25844651] (imputed)	N
615	chr6_ssto_hap7	4021115	4021116	rs9271401	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs9271401-G	0.245	9E-21	(Complement C4, C4A.C4B.4481.34.2)	0.28	[0.22-0.34] unit decrease	Affymetrix [10572788] (imputed)	N
615	chr6_ssto_hap7	4021115	4021116	rs9271401	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs9271401-G	0.245	5E-21	(cAMP-specific 3',5'-cyclic phosphodiesterase 4D, PDE4D.5255.22.3)	0.28	[0.22-0.34] unit decrease	Affymetrix [10572788] (imputed)	N
615	chr6_ssto_hap7	4021115	4021116	rs9271401	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs9271401-G	0.245	1E-24	(Glutamate receptor 4, GRIA4.10760.107.3)	0.3	[0.24-0.36] unit decrease	Affymetrix [10572788] (imputed)	N
615	chr6_ssto_hap7	4021178	4021179	rs9271406	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RPL30	5,357 Icelandic ancestry individuals	NA	6p21.32		rs9271406-G	0.4339	4E-12		0.126569	[0.091-0.162] unit increase	Illumina [7506463] (imputed)	N
615	chr6_ssto_hap7	4021178	4021179	rs9271406	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	6p21.32		rs9271406-?	NR	2E-8		0.00512675	[0.0033-0.0069] unit decrease	NR [NR]	N
615	chr6_ssto_hap7	4021178	4021179	rs9271406	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs9271406-A	NR	2E-24		0.0290677	[0.023-0.035] unit decrease	Affymetrix [321169] (imputed)	N
615	chr6_ssto_hap7	4021178	4021179	rs9271406	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	6p21.32	NR	rs9271406-G	0.497785	7E-25		0.024019469	[0.019-0.029] unit increase	Affymetrix [93095623] (imputed)	N
615	chr6_ssto_hap7	4021449	4021450	rs9271421	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	HLA-DQA1	rs9271421-C	0.861	5E-29	(GDH/6PGL endoplasmic bifunctional protein, H6PD.7161.25.3)	0.39	[0.31-0.47] unit decrease	Affymetrix [10572788] (imputed)	N
615	chr6_ssto_hap7	4021575	4021576	rs9271429	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	Systemic lupus erythematosus	1,639 East Asian ancestry cases, 2,410 East Asian ancestry controls	NA			rs9271429-G	NR	2E-11		0.2667	[0.19-0.34] unit decrease	Illumina [NR] (imputed)	N
615	chr6_ssto_hap7	4021621	4021622	rs9271431	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs9271431-A	NR	2E-14		0.0217731	[0.016-0.027] unit increase	Affymetrix [319769] (imputed)	N
615	chr6_ssto_hap7	4021621	4021622	rs9271431	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs9271431-A	NR	8E-14		0.0213218	[0.016-0.027] unit increase	Affymetrix [319769] (imputed)	N
615	chr6_ssto_hap7	4022218	4022219	rs9271469	34212547	An J	2021-07-01	Allergy Asthma Immunol Res	Genome-Wide Association Study of Korean Asthmatics: A Comparison With UK Asthmatics.	Adult asthma	1,386 Korean ancestry cases, 5,205 Korean ancestry controls	NA	6p21.32		rs9271469-C	0.28	4E-8		1.33	[1.2-1.48]	Affymetrix [4922160] (imputed)	N
615	chr6_ssto_hap7	4022301	4022302	rs76815088	35074870	Chia R	2022-02-01	Proc Natl Acad Sci U S A	Identification of genetic risk loci and prioritization of genes and pathways for myasthenia gravis: a genome-wide association study.	Myasthenia gravis	1,873 European ancestry cases, 36,370 European ancestry controls	7,412 European ancestry individuals	6p21.32		rs76815088-C	0.061	6E-16		0.42	[0.34-0.52]	Illumina [24006246] (imputed)	N
615	chr6_ssto_hap7	4022809	4022810	rs34104805	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.32	NR	rs34104805-?	NR	1E-13				Affymetrix [~ 8270000] (imputed)	N
615	chr6_ssto_hap7	4022809	4022810	rs34104805	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs34104805-?	NR	4E-17				Affymetrix [~ 8270000] (imputed)	N
615	chr6_ssto_hap7	4022858	4022859	rs35597309	25129146	Wu C	2014-08-17	Nat Genet	Joint analysis of three genome-wide association studies of esophageal squamous cell carcinoma in Chinese populations.	Esophageal squamous cell carcinoma	5,337 Han Chinese ancestry cases, 5,787 Han Chinese ancestry controls	9,654 Han Chinese ancestry cases, 10,058 Han Chinese ancestry  controls	6p21.32	HLA	rs35597309-A	0.072	1E-7		1.19	[1.12-1.27]	Affymetrix, Illumina [7556215] (imputed)	N
615	chr6_ssto_hap7	4022892	4022893	rs9271500	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	6p21.32		rs9271500-C	0.54239	1E-9		0.0250109	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4022955	4022956	rs73728611	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs73728611-A	0.878781	2E-8		0.0350323	[0.023-0.047] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4022955	4022956	rs73728611	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs73728611-A	0.878781	2E-8		0.0353342	[0.023-0.048] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4022955	4022956	rs73728611	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs73728611-A	0.878781	5E-9		0.0365405	[0.024-0.049] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4022955	4022956	rs73728611	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	6p21.32		rs73728611-A	0.878767	4E-9		0.0354428	[0.024-0.047] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4022955	4022956	rs73728611	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs73728611-A	0.878781	5E-8		0.0343432	[0.022-0.047] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4022955	4022956	rs73728611	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	6p21.32		rs73728611-A	0.878781	3E-8		0.0346994	[0.022-0.047] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4022955	4022956	rs73728611	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large VLDL particles	115,082 European ancestry individuals	NA	6p21.32		rs73728611-A	0.878781	3E-8		0.0346989	[0.022-0.047] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4022955	4022956	rs73728611	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large VLDL particles	115,082 European ancestry individuals	NA	6p21.32		rs73728611-A	0.878781	5E-8		0.0343334	[0.022-0.047] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4022955	4022956	rs73728611	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of chylomicrons and extremely large VLDL particles	115,082 European ancestry individuals	NA	6p21.32		rs73728611-A	0.878781	2E-8		0.0352602	[0.023-0.048] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4022955	4022956	rs73728611	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	6p21.32	HLA-DQA1	rs73728611-A	0.8765	1E-9		0.003	[0.0022-0.0038] unit increase	Affymetrix [15275733] (imputed)	N
615	chr6_ssto_hap7	4023576	4023577	rs9271536	33204752	Butler-Laporte G	2020-09-24	Open Forum Infect Dis	Genetic Determinants of Antibody-Mediated Immune Responses to Infectious Diseases Agents: A Genome-Wide and HLA Association Study.	Epstein-Barr virus VCA p18 antibody levels	8,518 White British ancestry individuals	NA	6p21.32	HLA-DQA1	rs9271536-A	0.180	7E-21		0.19	[0.15-0.23] unit increase	NR [25472218] (imputed)	N
615	chr6_ssto_hap7	4023576	4023577	rs9271536	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Terminally Differentiated CD4+ T cell %T cell	3,427 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9271536-T	0.77188	3E-18		0.291	[0.23-0.36] unit decrease	Illumina [18349913] (imputed)	N
615	chr6_ssto_hap7	4023576	4023577	rs9271536	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Terminally Differentiated CD4+ T cell %CD4+ T cell	3,427 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9271536-T	0.77188	8E-17		0.2806	[0.21-0.35] unit decrease	Illumina [18349913] (imputed)	N
615	chr6_ssto_hap7	4023576	4023577	rs9271536	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	SSC-A on CD4+ T cell	3,113 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9271536-T	0.76919	9E-14		0.2591	[0.19-0.33] unit decrease	Illumina [18030777] (imputed)	N
615	chr6_ssto_hap7	4023576	4023577	rs9271536	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Naive CD4+ T cell %CD4+ T cell	3,427 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9271536-T	0.77188	4E-12		0.2324	[0.17-0.3] unit increase	Illumina [18349913] (imputed)	N
615	chr6_ssto_hap7	4023576	4023577	rs9271536	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Effector Memory CD4+ T cell %T cell	3,427 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9271536-T	0.77188	3E-12		0.2368	[0.17-0.3] unit decrease	Illumina [18349913] (imputed)	N
615	chr6_ssto_hap7	4023580	4023581	rs9271537	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Terminally Differentiated CD4+ T cell Absolute Count	3,395 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9271537-T	0.6246700000000001	2E-9		0.1866	[0.13-0.25] unit decrease	Illumina [18332267] (imputed)	N
615	chr6_ssto_hap7	4023626	4023627	rs9271539	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p21.32	HLA-DRB1, HLA-DQA1	rs9271539-?	0.56	2E-7	(Turkish)	1.6393442	[1.35-1.96]	Illumina [up to 547389]	N
615	chr6_ssto_hap7	4023756	4023757	rs9271547	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	HLA-DQA2	rs9271547-A	0.551	6E-80	(HLA class II histocompatibility antigen, DQ alpha 2 chain, HLA.DQA2.7757.5.3)	0.45	[0.41-0.49] unit increase	Affymetrix [10572788] (imputed)	N
615	chr6_ssto_hap7	4023837	4023838	rs74995702	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs affecting bone structure and mineralization)	6,143 East Asian ancestry cases, 172,583 East Asian ancestry controls	NA	6p21.32		rs74995702-G	0.152630075	8E-16		0.21422668	[0.16-0.27] unit increase	Illumina [13429980] (imputed)	N
615	chr6_ssto_hap7	4023918	4023919	rs9271556	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	6p21.32		rs9271556-T	0.355911	1E-10		0.0285997	[0.02-0.037] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4024094	4024095	rs9271573	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small LDL	115,082 European ancestry individuals	NA	6p21.32		rs9271573-A	0.406337	9E-24		0.0408933	[0.033-0.049] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4024094	4024095	rs9271573	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium LDL	115,082 European ancestry individuals	NA	6p21.32		rs9271573-A	0.406337	6E-23		0.0404102	[0.032-0.048] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4024094	4024095	rs9271573	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large LDL	115,082 European ancestry individuals	NA	6p21.32		rs9271573-A	0.406337	6E-20		0.0376072	[0.03-0.046] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4024094	4024095	rs9271573	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in LDL	115,082 European ancestry individuals	NA	6p21.32		rs9271573-A	0.406337	1E-21		0.0393213	[0.031-0.047] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4024094	4024095	rs9271573	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to monounsaturated fatty acids	115,006 European ancestry individuals	NA	6p21.32		rs9271573-A	0.406357	1E-12		0.0285962	[0.021-0.036] unit increase	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4024094	4024095	rs9271573	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Monounsaturated fatty acid levels	115,006 European ancestry individuals	NA	6p21.32		rs9271573-A	0.406357	4E-25		0.0428694	[0.035-0.051] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4024094	4024095	rs9271573	32231244	Xie J	2020-03-30	Nat Commun	The genetic architecture of membranous nephropathy and its potential to improve non-invasive diagnosis.	Membranous nephropathy	2,150 European ancestry cases, 5,829 European ancestry controls, 1,612 East Asian ancestry cases, 1,970 East Asian ancestry controls	826 Chinese ancestry cases, 1,239 Chinese ancestry controls	6p21.32	HLA	rs9271573-A	NR	3E-154		2.41	[2.26-2.57]	Illumina [~ 7000000] (imputed)	N
615	chr6_ssto_hap7	4024094	4024095	rs9271573	32231244	Xie J	2020-03-30	Nat Commun	The genetic architecture of membranous nephropathy and its potential to improve non-invasive diagnosis.	Membranous nephropathy	2,150 European ancestry cases, 5,829 European ancestry controls	NA	6p21.32	HLA	rs9271573-A	0.44	2E-60		2.06	[1.89-2.25]	Illumina [~ 7000000] (imputed)	N
615	chr6_ssto_hap7	4024094	4024095	rs9271573	32231244	Xie J	2020-03-30	Nat Commun	The genetic architecture of membranous nephropathy and its potential to improve non-invasive diagnosis.	Membranous nephropathy	1,612 East Asian ancestry cases, 1,970 East Asian ancestry controls	NA	6p21.32	HLA	rs9271573-A	0.35	4E-102		2.97	[2.69-3.28]	Illumina [~ 7000000] (imputed)	N
615	chr6_ssto_hap7	4024094	4024095	rs9271573	28076899	Taylor KE	2017-01-11	Arthritis Rheumatol	Genome-Wide Association Analysis Reveals Genetic Heterogeneity of Sjogren's Syndrome According to Ancestry.	Sjogren's syndrome	585 European ancestry cases, up to 51 African ancestry cases, up to 164 Hispanic/Native american cases, up to 570 Asian ancestry cases, up to 59 cases, 1,546 European ancestry controls, 495 African ancestry controls, 237 Hispanic/Native American controls, 306 Asian ancestry controls, 148 controls.	NA	6p21.32	HLA-DQA1, HLA-DQB1, HLA-DRB1	rs9271573-?		3E-42		2.02	[1.82-2.23]	Illumina [1444884]	N
615	chr6_ssto_hap7	4024094	4024095	rs9271573	28076899	Taylor KE	2017-01-11	Arthritis Rheumatol	Genome-Wide Association Analysis Reveals Genetic Heterogeneity of Sjogren's Syndrome According to Ancestry.	Sjogren's syndrome	585 European ancestry cases, 1,546 European ancestry controls	NA	6p21.32	HLA-DQA1, HLA-DQB1, HLA-DRB1, HLA-DQA2	rs9271573-?		3E-34		2.29	[2.01-2.62]	Illumina [1444884]	N
615	chr6_ssto_hap7	4024216	4024217	rs2395225	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs2395225-C	NR	3E-11		0.0204906	[0.014-0.027] unit decrease	Affymetrix [321169] (imputed)	N
615	chr6_ssto_hap7	4024227	4024228	rs9271578	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs9271578-A	NR	2E-24		0.0287397	[0.023-0.034] unit decrease	Affymetrix [319769] (imputed)	N
615	chr6_ssto_hap7	4024227	4024228	rs9271578	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs9271578-A	NR	3E-23		0.0280541	[0.023-0.034] unit decrease	Affymetrix [319769] (imputed)	N
615	chr6_ssto_hap7	4024227	4024228	rs9271578	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	6p21.32		rs9271578-T	0.501806	3E-49		0.037933793	[0.033-0.043] unit increase	Affymetrix [93095623] (imputed)	N
615	chr6_ssto_hap7	4024229	4024230	rs9271579	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic sinusitis	7,529 European ancestry cases, 444,966 European ancestry controls, 4,617 East Asian ancestry cases, 152,226 East Asian ancestry controls	NA	6p21.32		rs9271579-A	NR	4E-36		0.1984	[0.17-0.23] unit increase	Affymetrix, Illumina [25838895] (imputed)	N
615	chr6_ssto_hap7	4024233	4024234	rs9271580	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Nasal polyps	5,093 European ancestry cases, 444,966 European ancestry controls, 160 East Asian ancestry cases, 151,846 East Asian ancestry controls	NA	6p21.32		rs9271580-G	NR	2E-40		0.352	[0.3-0.4] unit increase	Affymetrix, Illumina [25837843] (imputed)	N
615	chr6_ssto_hap7	4024314	4024315	rs17533090	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs17533090-T	0.22	5E-9		4.5	[3.42-5.91]	Illumina [NR] (imputed)	N
615	chr6_ssto_hap7	4024327	4024328	rs35062987	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	6p21.32	intergenic	rs35062987-T	0.2102	2E-39		0.0418	[0.036-0.048] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
615	chr6_ssto_hap7	4024360	4024361	rs34831921	32678081	Timmers PRHJ	2020-07-16	Nat Commun	Multivariate genomic scan implicates novel loci and haem metabolism in human ageing.	Aging traits (healthspan, parental lifespan or longevity) (multivariate analysis)	at least 837,415 European ancestry individuals	NA	6p21.32	HLA-DRB1, HLA-DQA1	rs34831921-A	0.1	6E-13				NR [7320282]	N
615	chr6_ssto_hap7	4024360	4024361	rs34831921	29030599	Joshi PK	2017-10-13	Nat Commun	Genome-wide meta-analysis associates HLA-DQA1/DRB1 and LPA and lifestyle factors with human longevity.	Parental lifespan	up to 586,626 European ancestry individuals, up to 19,433 African ancestry individuals	NA	6p21.32	HLA-DQA1, HLA-DRB1	rs34831921-A	0.09	4E-8	(EA)	0.6	years increase	Affymetrix, Illumina [at least 13643373] (imputed)	N
615	chr6_ssto_hap7	4024475	4024476	rs9271585	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	6p21.32	HLA-DQA1	rs9271585-A	0.4121	3E-7	(East Asian)	0.03	[0.019-0.041] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
615	chr6_ssto_hap7	4024475	4024476	rs9271585	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	6p21.32	HLA-DQA1	rs9271585-A	0.3329	7E-12		0.0249	[0.018-0.032] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
615	chr6_ssto_hap7	4024475	4024476	rs9271585	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	6p21.32	NR	rs9271585-A	0.3502	8E-8	(men)	0.0311	[0.02-0.042] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
615	chr6_ssto_hap7	4024495	4024496	rs9271586	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.32		rs9271586-G	0.495	6E-115				Affymetrix [10369434] (imputed)	N
615	chr6_ssto_hap7	4024521	4024522	rs3129763	21779181	Gorlova O	2011-07-14	PLoS Genet	Identification of novel genetic markers associated with clinical phenotypes of systemic sclerosis through a genome-wide association strategy.	Systemic sclerosis	2,296 European ancestry cases, 5,172 European ancestry controls	3,175 European ancestry cases, 4,210 European ancestry controls	6p21.32	HLA-DRB1, HLA-DQA1	rs3129763-?	0.25	1E-11	(ATA positive)	1.65	[1.42-1.91]	Illumina [NR] (imputed)	N
615	chr6_ssto_hap7	4024549	4024550	rs9271588	31879220	Lin GW	2019-12-23	Lancet Oncol	Genetic risk of extranodal natural killer T-cell lymphoma: a genome-wide association study in multiple populations.	Extranodal natural killer T-cell lymphoma (nasal type)	700 Han Chinese ancestry cases, 7,752 Han Chinese ancestry controls	717 East Asian ancestry cases, 12,650 East Asian ancestry controls	6p21.32	HLA-DRB1	rs9271588-C	0.4	9E-26		1.53	[1.41-1.65]	Illumina [3892410] (imputed)	N
615	chr6_ssto_hap7	4024549	4024550	rs9271588	31301374	Noguchi E	2019-07-10	J Allergy Clin Immunol	HLA-DQ and RBFOX1 as susceptibility genes for an outbreak of hydrolyzed wheat allergy.	Hydrolysed wheat protein allergy	452 Japanese ancestry cases, 2,700 Japaneses ancestry controls	45 Japanese ancestry cases, 326 Japaneses ancestry controls	6p21.32	NR	rs9271588-G	0.523	1E-26		2.3	[1.98-2.70]	Illumina [6575663] (imputed)	N
615	chr6_ssto_hap7	4024549	4024550	rs9271588	31102405	Labreche K	2019-05-17	Neuro Oncol	A genome-wide association study identifies susceptibility loci for primary central nervous system lymphoma at 6p25.3 and 3p22.1: a LOC network study.	Primary central nervous system lymphoma	475 European ancestry cases, 1,134 European ancestry controls	NA	6p21.32	NR	rs9271588-?	NR	2E-6		1.45	[1.25-1.68]	Illumina [> 10000000] (imputed)	N
615	chr6_ssto_hap7	4024549	4024550	rs9271588	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	6p21.32	intergenic	rs9271588-C	0.5051	4E-66		0.06142442	[0.054-0.068] unit increase	Affymetrix [~ 2500000] (imputed)	N
615	chr6_ssto_hap7	4024549	4024550	rs9271588	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	6p21.32	intergenic	rs9271588-C	0.5051	2E-58		0.0576552	[0.051-0.065] unit increase	Affymetrix [~ 2500000] (imputed)	N
615	chr6_ssto_hap7	4024549	4024550	rs9271588	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	6p21.32	intergenic	rs9271588-C	0.5051	1E-58		0.05764791	[0.051-0.065] unit increase	Affymetrix [~ 2500000] (imputed)	N
615	chr6_ssto_hap7	4024549	4024550	rs9271588	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	6p21.32	intergenic	rs9271588-C	0.5051	9E-68		0.06247162	[0.055-0.07] unit increase	Affymetrix [~ 2500000] (imputed)	N
615	chr6_ssto_hap7	4024549	4024550	rs9271588	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	6p21.32	intergenic	rs9271588-C	0.5051	2E-66		0.06164672	[0.055-0.069] unit increase	Affymetrix [~ 2500000] (imputed)	N
615	chr6_ssto_hap7	4024549	4024550	rs9271588	24097066	Li Y	2013-10-06	Nat Genet	A genome-wide association study in Han Chinese identifies a susceptibility locus for primary Sjogren's syndrome at 7q11.23.	Sjogren's syndrome	542 Han Chinese ancestry cases, 1,050 Han Chinese ancestry controls	1,303 Han Chinese ancestry cases, 2,727 Han Chinese ancestry controls	6p21.32	HLA-DRB1, HLA-DQA1, c6orf10, BTNL2, HLA-DRA, HLA-DRB5, HLA-DRB6	rs9271588-T	0.532	9E-37		1.75	[1.59-1.89]	Affymetrix [556134]	N
615	chr6_ssto_hap7	4024654	4024655	rs17599077	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs17599077-C	0.19	2E-8		4.08	[3.13-5.32]	Illumina [NR] (imputed)	N
615	chr6_ssto_hap7	4024794	4024795	rs9271593	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs9271593-C	NR	4E-12		0.0198725	[0.014-0.025] unit increase	Affymetrix [321016] (imputed)	N
615	chr6_ssto_hap7	4024844	4024845	rs34967069	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Tumor necrosis factor receptor superfamily member 6 levels	21,758 European ancestry individuals	9,173 individuals	6p21.32		rs34967069-T	0.12	3E-20		0.1381	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
615	chr6_ssto_hap7	4024844	4024845	rs34967069	30642433	Timmers PR	2019-01-15	Elife	Genomics of 1 million parent lifespans implicates novel pathways and common diseases and distinguishes survival chances.	Parental lifespan	at least 500,193 European ancestry offspring	NA	6p21.32	HLA-DQA1	rs34967069-T	0.07	4E-9		0.5613	[0.37-0.75] years increase	NR [up to 9000000] (imputed)	N
615	chr6_ssto_hap7	4024887	4024888	rs9271597	30674883	Jin Y	2019-01-23	Nat Commun	Early-onset autoimmune vitiligo associated with an enhancer variant haplotype that upregulates class II HLA expression.	Vitiligo (late onset)	1,467 European ancestry cases, 19,156 European ancestry controls	977 European ancestry cases, 727 European ancestry controls	6p21.32	NR	rs9271597-A	NR	4E-34		1.63	[1.55-1.71]	NR [up to 494043] (imputed)	N
615	chr6_ssto_hap7	4024887	4024888	rs9271597	30674883	Jin Y	2019-01-23	Nat Commun	Early-onset autoimmune vitiligo associated with an enhancer variant haplotype that upregulates class II HLA expression.	Vitiligo (early onset)	704 European ancestry cases, 9,031 European ancestry controls	375 European ancestry cases, 1,455 European ancestry controls	6p21.32	NR	rs9271597-A	NR	2E-40		2.23	[2.11-2.35]	NR [up to 494043] (imputed)	N
615	chr6_ssto_hap7	4024887	4024888	rs9271597	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	Factor VIII levels	25,897 European ancestry individuals, 4,500 African American individuals, 773 Asian ancestry individuals, 1,440 Hispanic individuals	NA	6p21.32	HLA-DQA1	rs9271597-A	0.42	6E-6	(EA)	0.0137	[0.0084-0.019] unit decrease	Affymetrix, Illumina [13887196] (imputed)	N
615	chr6_ssto_hap7	4024887	4024888	rs9271597	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	Factor VIII levels	25,897 European ancestry individuals, 4,500 African American individuals, 773 Asian ancestry individuals, 1,440 Hispanic individuals	NA	6p21.32	HLA-DQA1	rs9271597-A	0.41	1E-8		0.0152	[0.0099-0.0205] unit decrease	Affymetrix, Illumina [13887196] (imputed)	N
615	chr6_ssto_hap7	4024887	4024888	rs9271597	27723757	Jin Y	2016-11-01	Nat Genet	Genome-wide association studies of autoimmune vitiligo identify 23 new risk loci and highlight key pathways and regulatory variants.	Vitiligo	2,853 European ancestry cases and 37,405 European ancestry controls	1,827 European ancestry cases and 2,181 European ancestry controls	6p21.32	HLA-DRB1, HLA-DQA1	rs9271597-A	0.4269	3E-89		1.772	NR	Illumina [8966411] (imputed)	N
615	chr6_ssto_hap7	4024910	4024910	rs144158892	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	6p21.32	HLA-DQA1	rs144158892-ATCT	0.504957	2E-12		0.015783602	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
615	chr6_ssto_hap7	4025027	4025028	rs3129765	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	FSC-A on CD4+ T cell	3,113 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs3129765-G	0.75653	1E-10		0.2158	[0.15-0.28] unit decrease	Illumina [18030777] (imputed)	N
615	chr6_ssto_hap7	4025047	4025048	rs9271605	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	6p21.32		rs9271605-A	0.35118	1E-6		0.034564	[0.021-0.049] unit increase	Affymetrix [15580782] (imputed)	N
615	chr6_ssto_hap7	4025068	4025069	rs112396255	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs112396255-G	0.22	5E-9		4.5	[3.42-5.91]	Illumina [NR] (imputed)	N
615	chr6_ssto_hap7	4025166	4025167	rs73728618	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs73728618-T	NR	6E-33		1.481	[1.389-1.58]	Affymetrix [7846216] (imputed)	N
615	chr6_ssto_hap7	4025187	4025188	rs9271608	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	up to 92,771 European ancestry males, up to 113,387 European ancestry females	NA	6p21.32	HLA-DQA1	rs9271608-G	0.22	2E-17		0.042	[0.032-0.052] unit increase	Affymetrix, Illumina, Perlegen [2437193] (imputed)	N
615	chr6_ssto_hap7	4025208	4025209	rs9271611	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	6p21.32	NR	rs9271611-G	0.41	5E-19		1.16	[1.12-1.2]	Illumina [8468885] (imputed)	N
615	chr6_ssto_hap7	4025208	4025209	rs9271611	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Keratinocyte cancer (MTAG)	at least 18,538 European ancestry cases, at least 340,302 European ancestry controls	NA	6p21.32	HLA-DQA1	rs9271611-G	0.379011	2E-22		1.09	[1.07-1.11]	Affymetrix [7600000] (imputed)	N
615	chr6_ssto_hap7	4025573	4025574	rs9271629	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Lymphocyte Absolute Count	3,653 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9271629-A	0.71717	2E-8		0.1945	[0.13-0.26] unit increase	Illumina [18427377] (imputed)	N
615	chr6_ssto_hap7	4025781	4025782	rs9271640	25616667	Goris A	2015-01-22	Brain	Genetic variants are major determinants of CSF antibody levels in multiple sclerosis.	Oligoclonal band status in multiple sclerosis	2,232 European ancestry OCB positive individuals, 275 European ancestry OCB negative individuals, 439 OCB positive individuals, 80 OCB negative individuals	3,026 OCB positive individuals, 452 OCB negative individuals	6p21.32	HLA-DRB1	rs9271640-A	NR	5E-12		1.56	[1.38-1.77]	NR [485522]	N
615	chr6_ssto_hap7	4025781	4025782	rs9271640	23472185	Mero IL	2013-03-05	PLoS One	Oligoclonal band status in Scandinavian multiple sclerosis patients is associated with specific genetic risk alleles.	Multiple sclerosis (OCB status)	1,367 European ancestry OCB positive cases, 161 European ancestry OCB negative cases, 428 European ancestry controls	NA	6p21.32	HLA-DQA1	rs9271640-?	NR	2E-20	(OCB positive vs. controls)	2.37	[1.97-2.84]	Illumina [495970]	N
615	chr6_ssto_hap7	4025800	4025801	rs9271642	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in IDL	115,082 European ancestry individuals	NA	6p21.32		rs9271642-A	0.407279	2E-21		0.0389581	[0.031-0.047] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4025800	4025801	rs9271642	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	6p21.32		rs9271642-A	0.407279	9E-12		0.028651	[0.02-0.037] unit increase	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4025800	4025801	rs9271642	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6p21.32	HLA-DQA1	rs9271642-G	0.59407	9E-33		0.032831848	[0.027-0.038] unit increase	Affymetrix [93095623] (imputed)	N
615	chr6_ssto_hap7	4026191	4026192	rs28421666	27436580	Cui Q	2016-07-19	Hum Mol Genet	An extended genome-wide association study identifies novel susceptibility loci for nasopharyngeal carcinoma.	Nasopharyngeal carcinoma	1,583 Southern Chinese ancestry cases, 2,979 Southern Chinese ancestry controls	5,463 Southern Chinese ancestry cases, 5,591 Southern Chinese ancestry controls	6p21.32	NR	rs28421666-?	0.87	1E-10		1.64	[1.43-1.92]	Illumina [463250]	N
615	chr6_ssto_hap7	4026191	4026192	rs28421666	20512145	Bei JX	2010-05-30	Nat Genet	A genome-wide association study of nasopharyngeal carcinoma identifies three new susceptibility loci.	Nasopharyngeal carcinoma	1,583 Chinese ancestry cases, 1,894 Chinese ancestry controls	3,507 Chinese ancestry cases, 3,063 Chinese ancestry controls, 284  Chinese ancestry trios	6p21.32	HLA-DQ, HLA-DR	rs28421666-?	0.88	2E-18		1.49	[1.37-1.64]	Illumina [464328]	N
615	chr6_ssto_hap7	4026247	4026248	rs566952760	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs566952760-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
615	chr6_ssto_hap7	4026250	4026251	rs28383322	29227965	Pilling LC	2017-12-01	Aging (Albany NY)	Human longevity: 25 genetic loci associated in 389,166 UK biobank participants.	Parental longevity (mother's attained age)	412,937 British ancestry individuals	NA	6p21.32	HLA-DQA1, HLA-DRB1	rs28383322-C	NR	4E-9				Affymetrix [11535925] (imputed)	N
615	chr6_ssto_hap7	4026250	4026251	rs28383322	29227965	Pilling LC	2017-12-01	Aging (Albany NY)	Human longevity: 25 genetic loci associated in 389,166 UK biobank participants.	Parental longevity (combined parental attained age, Martingale residuals)	389,166 British ancestry individuals	NA	6p21.32	HLA-DRB1, HLA-DQA1	rs28383322-C	0.783	5E-11		0.0182	[0.013-0.024] unit increase	Affymetrix [11535925] (imputed)	N
615	chr6_ssto_hap7	4026287	4026288	rs9271673	33143745	Andlauer TFM	2020-11-04	BMC Med	Treatment- and population-specific genetic risk factors for anti-drug antibodies against interferon-beta: a GWAS.	Neutralising antibody response to interferon beta therapy in multiple sclerosis (antibody titre; IFN?-1a subcutaneous)	up to 2,000 German and Swedish ancestry individuals	up to 757 German and Swedish ancestry individuals	6p21.32		rs9271673-C	NR	2E-28		0.37	[0.31-0.43] unit increase	Illumina [8550834] (imputed)	N
615	chr6_ssto_hap7	4026535	4026536	rs9271695	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	6p21.32	NR	rs9271695-G	0.8044	1E-13		1.09	[1.07-1.12]	Affymetrix, Illumina [16900397] (imputed)	N
615	chr6_ssto_hap7	4026599	4026600	rs35508382	31605138	Avitabile M	2019-09-07	Carcinogenesis	Neural crest-derived tumor neuroblastoma and melanoma share 1p13.2 as susceptibility locus that shows a long-range interaction with the SLC16A1 gene.	Neuroblastoma or malignant cutaneous melanoma	2,101 European ancestry neuroblastoma cases, 12,874 European ancestry malignant cutaneous melanoma cases, 27,405 European ancestry controls	2,039 European ancestry neuroblastoma cases, 508 European ancestry malignant cutaneous melanoma cases, 3,469 European ancestry controls	6p21.32	HLA-DRB1, HLA-DQA1	rs35508382-G	0.09124	2E-6		1.1408801	[1.08-1.20]	NR [NR] (imputed)	N
615	chr6_ssto_hap7	4026653	4026654	rs9271700	33143745	Andlauer TFM	2020-11-04	BMC Med	Treatment- and population-specific genetic risk factors for anti-drug antibodies against interferon-beta: a GWAS.	Neutralising antibody response to interferon beta therapy in multiple sclerosis (presence of antibodies; IFN?-1a subcutaneous)	up to 2,000 German and Swedish ancestry individuals	up to 757 German and Swedish ancestry individuals	6p21.32		rs9271700-G	0.42	5E-27		1.25	[1.01-1.49] unit increase	Illumina [8550834] (imputed)	N
615	chr6_ssto_hap7	4026654	4026655	rs9271701	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6p21.32	NR	rs9271701-T	0.1795	2E-17		1.067	[1.051-1.082]	Affymetrix [15688218] (imputed)	N
615	chr6_ssto_hap7	4026699	4026700	rs35324266	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Squamous cell carcinoma	9,674 European ancestry cases, 625,657 European ancestry controls	NA	6p21.32	HLA-DQA1	rs35324266-T	0.041654	4E-9		1.14	[1.10-1.18]	Affymetrix, Illumina [up to 9061544] (imputed)	N
615	chr6_ssto_hap7	4026920	4026921	rs9271718	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs9271718-T	NR	1E-18		0.0262825	[0.02-0.032] unit increase	Affymetrix [321169] (imputed)	N
615	chr6_ssto_hap7	4026974	4026975	rs9271721	33143745	Andlauer TFM	2020-11-04	BMC Med	Treatment- and population-specific genetic risk factors for anti-drug antibodies against interferon-beta: a GWAS.	Binding antibody response to interferon beta therapy in multiple sclerosis (antibody levels; IFN?-1a subcutaneous and intramuscular)	up to 2,000 German and Swedish ancestry individuals	up to 757 German and Swedish ancestry individuals	6p21.32		rs9271721-G	NR	5E-22		0.32949224	[0.26-0.4] unit increase	Illumina [8550834] (imputed)	N
615	chr6_ssto_hap7	4027063	4027064	rs9271730	33766948	Zhu Z	2021-03-25	Eur Respir J	A large-scale genome-wide association analysis of lung function in the Chinese population identifies novel loci and highlights shared genetic etiology with obesity.	Lung function (FVC) and body mass index	up to 100,285 Chinese ancestry individuals	up to 457,756 European ancestry individuals	6p21.32		rs9271730-G	NR	2E-14	(East Asian)			Affymetrix [NR] (imputed)	N
615	chr6_ssto_hap7	4027063	4027064	rs9271730	33766948	Zhu Z	2021-03-25	Eur Respir J	A large-scale genome-wide association analysis of lung function in the Chinese population identifies novel loci and highlights shared genetic etiology with obesity.	Lung function (FEV1) and body mass index	up to 100,285 Chinese ancestry individuals	up to 457,756 European ancestry individuals	6p21.32		rs9271730-G	NR	8E-15	(East Asian)			Affymetrix [NR] (imputed)	N
615	chr6_ssto_hap7	4027082	4027083	rs9271732	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs9271732-G	NR	3E-8		0.0190926	[0.012-0.026] unit decrease	Affymetrix [321169] (imputed)	N
615	chr6_ssto_hap7	4027132	4027133	rs116189786	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	6p21.32	HLA-DRB1, HLA-DQA1	rs116189786-A	NR	5E-33		1.26	[1.22-1.3]	Affymetrix [9000000] (imputed)	N
615	chr6_ssto_hap7	4027145	4027146	rs9271737	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p21.32	HLA-DQA1	rs9271737-C	0.503238	2E-34		0.036497757	[0.031-0.042] unit increase	Affymetrix [93095623] (imputed)	N
615	chr6_ssto_hap7	4027482	4027483	rs9271762	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs9271762-G	0.304	9E-18	(Complement C4, C4A.C4B.4481.34.2)	0.25	[0.19-0.31] unit increase	Affymetrix [10572788] (imputed)	N
615	chr6_ssto_hap7	4027493	4027494	rs28383323	34454985	Sliz E	2021-08-26	J Allergy Clin Immunol	Uniting biobank resources reveals novel genetic pathways modulating susceptibility for atopic dermatitis.	Atopic dermatitis	22,474 European ancestry cases, 774,187 European ancestry controls	NA	6p21.32	NR	rs28383323-a	0.2381	1E-13		0.89	[0.86-0.92]	Affymetrix, Illumina [16201029] (imputed)	N
615	chr6_ssto_hap7	4027557	4027558	rs34518860	32276964	Shete S	2020-04-10	Cancer Res	A genome-wide association study identifies two novel susceptible regions for squamous cell carcinoma of the head and neck.	Oropharynx cancer	1,144 European ancestry cases, 4,493 European ancestry controls	2,328 European ancestry cases, 3,232 European ancestry controls	6p21.32	HLA-DQA1	rs34518860-G	0.89	3E-17		1.6393442	[1.47-1.85]	Illumina [7858089] (imputed)	N
615	chr6_ssto_hap7	4027609	4027610	rs532322163	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Rheumatoid arthritis	5,348 East Asian ancestry cases, 173,268 East Asian ancestry controls	NA	6p21.32		rs532322163-T	0.133495442	2E-152		0.8641147	[0.8-0.93] unit increase	Illumina [13429970] (imputed)	N
615	chr6_ssto_hap7	4027642	4027643	rs9271768	33766948	Zhu Z	2021-03-25	Eur Respir J	A large-scale genome-wide association analysis of lung function in the Chinese population identifies novel loci and highlights shared genetic etiology with obesity.	Lung function (FEV1)	100,285 Chinese ancestry individuals	NA	6p21.32		rs9271768-A	0.61	4E-12		0.032	L increase	Affymetrix [NR] (imputed)	N
615	chr6_ssto_hap7	4027702	4027703	rs9271770	31089142	Law PJ	2019-05-14	Nat Commun	Association analyses identify 31 new risk loci for colorectal cancer susceptibility.	Colorectal cancer	31,197 European ancestry cases, 61,770 European ancestry controls	NA	6p21.32	NR	rs9271770-A	0.81	4E-8		1.08	[1.05-1.11]	Affymetrix, Illumina [> 10000000] (imputed)	N
615	chr6_ssto_hap7	4027729	4027730	rs9271772	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Naive CD4+ T cell Absolute Count	3,395 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9271772-A	0.75528	3E-13		0.2514	[0.18-0.32] unit increase	Illumina [18332267] (imputed)	N
615	chr6_ssto_hap7	4027729	4027730	rs9271772	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD127 on CD45RA+ CD4+ T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9271772-A	0.75569	2E-13		0.2608	[0.19-0.33] unit increase	Illumina [17954496] (imputed)	N
615	chr6_ssto_hap7	4027763	4027764	rs9271774	28566273	Scott RA	2017-05-31	Diabetes	An Expanded Genome-Wide Association Study of Type 2 Diabetes in Europeans.	Type 2 diabetes	up to 26,676 European ancestry cases, up to 132,532 European ancestry controls	14,545 European ancestry cases, 38,994 European ancestry controls	6p21.32	HLA-DQA1	rs9271774-C	0.74	1E-9		1.09	[1.06-1.12]	Affymetrix, Illumina [at least 11579618] (imputed)	N
615	chr6_ssto_hap7	4027838	4027839	rs114741460	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	6p21.32		rs114741460-C	0.953428	2E-13		0.0731865	[0.054-0.093] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4027838	4027839	rs114741460	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	6p21.32		rs114741460-C	0.953428	3E-8		0.051812	[0.034-0.07] unit increase	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4027838	4027839	rs114741460	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in IDL	115,082 European ancestry individuals	NA	6p21.32		rs114741460-C	0.953428	6E-14		0.0768716	[0.057-0.097] unit increase	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4027838	4027839	rs114741460	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	6p21.32		rs114741460-C	0.953428	4E-13		0.0724454	[0.053-0.092] unit increase	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4027838	4027839	rs114741460	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	6p21.32		rs114741460-C	0.953428	1E-14		0.078791	[0.059-0.099] unit increase	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4028059	4028059	rs9281962	33143745	Andlauer TFM	2020-11-04	BMC Med	Treatment- and population-specific genetic risk factors for anti-drug antibodies against interferon-beta: a GWAS.	Binding antibody response to interferon beta therapy in multiple sclerosis (antibody levels; IFN?-1a subcutaneous)	up to 2,000 German and Swedish ancestry individuals	up to 757 German and Swedish ancestry individuals	6p21.32		rs9281962-T	0.44	5E-32		0.5091026	[0.42-0.59] unit increase	Illumina [8550834] (imputed)	N
615	chr6_ssto_hap7	4028117	4028118	rs116352702	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs116352702-A	0.954	8E-18	(conditional)	0.543	[0.4-0.68]	Illumina [11270530] (imputed)	N
615	chr6_ssto_hap7	4028556	4028557	rs3104389	32769997	Zhou W	2020-08-07	Nat Commun	GWAS of thyroid stimulating hormone highlights pleiotropic effects and inverse association with thyroid cancer.	Thyroid stimulating hormone levels	119,715 European ancestry individuals	NA	6p21.32	HLA-DRB1, HLA-DQA1	rs3104389-A	0.424293733420786	6E-12		0.0623	[0.045-0.08] SD increase	Illumina [22400000] (imputed)	N
615	chr6_ssto_hap7	4028576	4028577	rs9271853	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C11orf87	5,363 Icelandic ancestry individuals	NA	6p21.32		rs9271853-T	0.3105	7E-12		0.135762	[0.097-0.175] unit decrease	Illumina [7506463] (imputed)	N
615	chr6_ssto_hap7	4028682	4028683	rs9271858	23291585	Fakiola M	2013-01-06	Nat Genet	Common variants in the HLA-DRB1-HLA-DQA1 HLA class II region are associated with susceptibility to visceral leishmaniasis.	Leishmaniasis (visceral)	989 Indian ancestry cases, 1,089 Indian ancestry controls, 357 Brazilian ancestry cases, 1,613 Brazilian ancestry unaffected relatives	951 Indian ancestry cases, 990 Indian ancestry controls	6p21.32	HLA, HLA-DRB1, HLA-DQA1	rs9271858-G	0.39	3E-17		1.41	[1.30-1.52]	Illumina [521134]	N
615	chr6_ssto_hap7	4028735	4028736	rs28362132	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CCL19	5,367 Icelandic ancestry individuals	NA	6p21.32		rs28362132-T	0.0511	8E-36		0.540362	[0.46-0.63] unit increase	Illumina [7506463] (imputed)	N
615	chr6_ssto_hap7	4029057	4029058	rs9271880	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs9271880-C	NR	2E-10		0.0194381	[0.013-0.025] unit decrease	Affymetrix [319769] (imputed)	N
615	chr6_ssto_hap7	4029057	4029058	rs9271880	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs9271880-C	NR	5E-10		0.0190783	[0.013-0.025] unit decrease	Affymetrix [319769] (imputed)	N
615	chr6_ssto_hap7	4030001	4030002	rs9271925	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	6p21.32	HLA-DQA1	rs9271925-G	0.3014	3E-9		0.0266219	[0.018-0.035] unit decrease	Affymetrix [~ 2500000] (imputed)	N
615	chr6_ssto_hap7	4030185	4030185	rs9281971	33143745	Andlauer TFM	2020-11-04	BMC Med	Treatment- and population-specific genetic risk factors for anti-drug antibodies against interferon-beta: a GWAS.	Neutralising antibody response to interferon beta therapy in multiple sclerosis (presence of antibodies; all treatment preparations)	up to 2,000 German and Swedish ancestry individuals	up to 757 German and Swedish ancestry individuals	6p21.32		rs9281971-TTTTTTT	0.36	2E-17		0.6	[-0.46--0.74] unit decrease	Illumina [8550834] (imputed)	N
615	chr6_ssto_hap7	4030185	4030185	rs9281971	33143745	Andlauer TFM	2020-11-04	BMC Med	Treatment- and population-specific genetic risk factors for anti-drug antibodies against interferon-beta: a GWAS.	Neutralising antibody response to interferon beta therapy in multiple sclerosis (antibody titre; all treatment preparations)	up to 2,000 German and Swedish ancestry individuals	up to 757 German and Swedish ancestry individuals	6p21.32		rs9281971-TTTTTTT	NR	2E-17		0.16	[-0.12--0.2] unit decrease	Illumina [8550834] (imputed)	N
615	chr6_ssto_hap7	4030480	4030481	rs3129769	26272072	Jiang X	2015-08-13	Rheumatology (Oxford)	An Immunochip-based interaction study of contrasting interaction effects with smoking in ACPA-positive versus ACPA-negative rheumatoid arthritis.	ACPA-positive rheumatoid arthritis (smoking interaction)	340 European ancestry never-smoker cases, 493 European ancestry ever-smoker cases, 746 European ancestry never-smoker controls, 994 European ancestry ever-smoker controls	187 European ancestry never-smoker cases, 421 European ancestry ever-smoker cases, 461 European ancestry never-smoker controls, 447 European ancestry ever-smoker controls	6p21.32	NR	rs3129769-?	NR	3E-11	(adjusted for HLA shared epitope)	1.724138	[1.33-2.44]	Illumina [133648] (imputed)	N
615	chr6_ssto_hap7	4030552	4030553	rs9271947	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	6p21.32		rs9271947-T	NR	5E-12		0.0142	[0.01-0.018] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
615	chr6_ssto_hap7	4030798	4030799	rs114798579	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	6p21.32	NR	rs114798579-?	NR	7E-19	(conditional)			Affymetrix [15688218] (imputed)	N
615	chr6_ssto_hap7	4030892	4030893	rs140145058	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large LDL	115,082 European ancestry individuals	NA	6p21.32		rs140145058-A	0.864668	1E-15		0.0486929	[0.037-0.061] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4030892	4030893	rs140145058	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	LDL cholesterol levels	115,082 European ancestry individuals	NA	6p21.32		rs140145058-A	0.864668	7E-16		0.0494415	[0.037-0.061] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4030892	4030893	rs140145058	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large LDL	115,082 European ancestry individuals	NA	6p21.32		rs140145058-A	0.864668	1E-15		0.048909	[0.037-0.061] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4030892	4030893	rs140145058	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large LDL	115,082 European ancestry individuals	NA	6p21.32		rs140145058-A	0.864668	2E-15		0.0482138	[0.036-0.06] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4031485	4031486	rs146668528	29785011	Zhu Z	2018-05-21	Nat Genet	A genome-wide cross-trait analysis from UK Biobank highlights the shared genetic architecture of asthma and allergic diseases.	Allergic disease (asthma, hay fever or eczema)	25,685 European ancestry allergic diseases cases, 76,768 European ancestry controls	NA	6p21.32	HLA-DQA1	rs146668528-?	NR	5E-12		1.1904762	[1.12-1.25]	Affymetrix [74888535] (imputed)	N
615	chr6_ssto_hap7	4031547	4031548	rs1281943	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs1281943-C	NR	2E-10		0.0328506	[0.023-0.043] unit increase	Affymetrix [321169] (imputed)	N
615	chr6_ssto_hap7	4032518	4032519	rs9461780	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	6p21.32	HLA-DQA1	rs9461780-T	0.075286	3E-15		0.033892684	[0.025-0.042] unit increase	Affymetrix [93095623] (imputed)	N
615	chr6_ssto_hap7	4032528	4032529	rs9272050	33794208	Bowden SJ	2021-04-01	Lancet Oncol	Genetic variation in cervical preinvasive and invasive disease: a genome-wide association study.	Cervical intraepithelial neoplasia grade 3 and invasive cervical cancer	764 European ancestry invasive cervical cancer cases, 4,005 European ancestry cervical intraepithelial neoplasia grade 3 cases, 145,545 European ancestry controls	NA	6p21.32	HLA-DQA1	rs9272050-?	NR	3E-28		1.27	[1.21-1.32]	Affymetrix [9600464] (imputed)	N
615	chr6_ssto_hap7	4032528	4032529	rs9272050	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cervical cancer	6,563 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs9272050-G	NR	1E-39		1.267	NR	Affymetrix [7846216] (imputed)	N
615	chr6_ssto_hap7	4032528	4032529	rs9272050	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p21.32	HLA-DRB1	rs9272050-G	0.38	1E-30		1.19	[1.17-1.21] unit increase	Illumina [at least 560000] (imputed)	N
615	chr6_ssto_hap7	4032944	4032945	rs9272071	33143745	Andlauer TFM	2020-11-04	BMC Med	Treatment- and population-specific genetic risk factors for anti-drug antibodies against interferon-beta: a GWAS.	Binding antibody response to interferon beta therapy in multiple sclerosis (antibody levels; all treatment preparations)	up to 2,000 German and Swedish ancestry individuals	up to 757 German and Swedish ancestry individuals	6p21.32		rs9272071-C	0.32	5E-18		0.22615278	[-0.17--0.28] unit decrease	Illumina [8550834] (imputed)	N
615	chr6_ssto_hap7	4033444	4033445	rs9272105	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	6p21.32	NR	rs9272105-?	NR	5E-12				Affymetrix [~ 8270000] (imputed)	N
615	chr6_ssto_hap7	4033444	4033445	rs9272105	22807686	Li S	2012-07-12	PLoS Genet	GWAS identifies novel susceptibility loci on 6p21.32 and 21q21.3 for hepatocellular carcinoma in chronic hepatitis B virus carriers.	Hepatocellular carcinoma	1,538 Han Chinese ancestry HBV-positive HCC cases, 1,465 Han Chinese ancestry chronic HBV carriers	4,431 Han Chinese ancestry HBV-positive HCC cases, 4,725 Han Chinese ancestry chronic HBV carriers	6p21.32	HLA-DRB1, HLA-DQA1	rs9272105-A	0.45	5E-22		1.28	[1.22-1.35]	NR [523663]	N
615	chr6_ssto_hap7	4033444	4033445	rs9272105	21502966	Weber F	2011-04-19	Pharmacogenomics J	Single-nucleotide polymorphisms in HLA- and non-HLA genes associated with the development of antibodies to interferon-? therapy in multiple sclerosis patients.	Response to interferon beta therapy	178 European ancestry antibody-positive individuals, 184 European ancestry antibody-negative individuals	350 European ancestry antibody-positive individuals, 468 European ancestry antibody-negative individuals	6p21.32	HLA-DRB1, HLA-DQA1	rs9272105-A	0.44	4E-10		0.26	[NR] unit increase	Illumina [~ 317000]	N
615	chr6_ssto_hap7	4033448	4033449	rs3104376	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	6p21.32	Intergenic	rs3104376-T	NR	2E-28		0.0514741	[0.042-0.061] unit increase	Illumina [13520550] (imputed)	N
615	chr6_ssto_hap7	4033502	4033503	rs35242582	28029757	Merkel PA	2016-12-28	Arthritis Rheumatol	Identification of Functional and Expression Polymorphisms Associated With Risk for Antineutrophil Cytoplasmic Autoantibody-Associated Vasculitis.	Antineutrophil cytoplasmic antibody-associated vasculitis	1,015 European ancestry granulomatosis with polyangiitis cases, 206 European ancestry microscopic polyangiitis cases, 3,258 European ancestry controls.	541 European ancestry granulomatosis with polyangiitis cases, 30 European ancestry microscopic polyangiitis cases, 1,465 European ancestry controls.	6p21.32	HLA-DQA1	rs35242582-A	0.74	6E-23		1.6	1.46-1.76	Affymetrix [at least 333035] (imputed)	N
615	chr6_ssto_hap7	4033819	4033820	rs3104373	27386562	Andlauer TF	2016-06-17	Sci Adv	Novel multiple sclerosis susceptibility loci implicated in epigenetic regulation.	Multiple sclerosis	4,888 German ancestry cases, 10,395 German ancestry controls	2,903 Sardinian ancestry cases, 3,323 Sardinian ancestry controls	6p21.32	HLA-DRB1	rs3104373-T		1E-234		2.9	[2.72-3.09]	Illumina [at least 8143088] (imputed)	N
615	chr6_ssto_hap7	4033848	4033849	rs9272116	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Creatinine levels	110,051 European ancestry individuals	NA	6p21.32		rs9272116-T	0.506915	1E-15		0.0282801	[0.021-0.035] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4034029	4034030	rs13214992	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	6p21.32	intergenic	rs13214992-A	0.0562	3E-29		0.1055	[0.087-0.124] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
615	chr6_ssto_hap7	4034115	4034116	rs9272131	30450575	Hojfeldt SG	2018-11-18	Br J Haematol	Genetic predisposition to PEG-asparaginase hypersensitivity in children treated according to NOPHO ALL2008.	PEG-asparaginase hypersensitivity without enzyme activity in childhood acute lymphoblastic leukaemia	59 European ancestry cases, 772 European ancestry controls	NA	6p21.32	HLA-DQA1, HLA-DQB1, HLA-DRB1	rs9272131-T	0.11	9E-6		3.01	[1.85-4.91]	Illumina [NR]	N
615	chr6_ssto_hap7	4034247	4034248	rs9272143	28806749	Leo PJ	2017-08-14	PLoS Genet	Defining the genetic susceptibility to cervical neoplasia-A genome-wide association study.	Cervical cancer	2,866 European ancestry cases, 6,481 European ancestry controls	NA	6p21.32	HLA-DRB1	rs9272143-?	NR	5E-15		1.3513513	[NR]	Illumina [10863230] (imputed)	N
615	chr6_ssto_hap7	4034247	4034248	rs9272143	23482656	Chen D	2013-03-12	J Natl Cancer Inst	Genome-wide association study of susceptibility loci for cervical cancer.	Cervical cancer	1,034 European ancestry cases, 3,948 European ancestry controls	1,140 European ancestry cases, 1,058 European ancestry controls	6p21.32	HLA-DRB1, HLA-DQA1	rs9272143-?	NR	3E-22		1.49	[1.37-1.61]	Illumina [632668]	N
615	chr6_ssto_hap7	4034463	4034464	rs9272154	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p21.32	NR	rs9272154-?	NR	9E-12		0.0937	[0.067-0.121] unit increase	Illumina [at least 560000] (imputed)	N
615	chr6_ssto_hap7	4034732	4034733	rs72848251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs72848251-G	0.805325	4E-21		0.0493811	[0.039-0.06] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4034732	4034733	rs72848251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Remnant cholesterol (non-HDL, non-LDL -cholesterol)	115,082 European ancestry individuals	NA	6p21.32		rs72848251-G	0.805325	8E-20		0.0484938	[0.038-0.059] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4034732	4034733	rs72848251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of apolipoprotein B to apolipoprotein A1 levels	115,082 European ancestry individuals	NA	6p21.32		rs72848251-G	0.805325	6E-19		0.0468108	[0.036-0.057] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4034732	4034733	rs72848251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs72848251-G	0.805325	1E-22		0.0513513	[0.041-0.062] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4034732	4034733	rs72848251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs72848251-G	0.805325	2E-21		0.0496998	[0.039-0.06] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4034732	4034733	rs72848251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very small VLDL particles	115,082 European ancestry individuals	NA	6p21.32		rs72848251-G	0.805325	2E-20		0.048766	[0.038-0.059] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4034732	4034733	rs72848251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large LDL particles	115,082 European ancestry individuals	NA	6p21.32		rs72848251-G	0.805325	2E-23		0.0532642	[0.043-0.064] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4034732	4034733	rs72848251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of LDL particles	115,082 European ancestry individuals	NA	6p21.32		rs72848251-G	0.805325	2E-22		0.0522239	[0.042-0.063] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4034732	4034733	rs72848251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in VLDL	115,082 European ancestry individuals	NA	6p21.32		rs72848251-G	0.805325	4E-26		0.0566218	[0.046-0.067] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4034732	4034733	rs72848251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs72848251-G	0.805325	1E-17		0.0444632	[0.034-0.055] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4034732	4034733	rs72848251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	6p21.32		rs72848251-G	0.805325	4E-24		0.0541049	[0.044-0.065] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4034732	4034733	rs72848251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein B levels	115,082 European ancestry individuals	NA	6p21.32		rs72848251-G	0.805325	4E-22		0.0517157	[0.041-0.062] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4034732	4034733	rs72848251	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	6p21.32	HLA-DQA1	rs72848251-G	0.804518	1E-38		0.0349134	[0.03-0.04] unit decrease	Affymetrix [NR] (imputed)	N
615	chr6_ssto_hap7	4035251	4035252	rs147841808	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in IDL	115,082 European ancestry individuals	NA	6p21.32		rs147841808-C	0.867699	2E-14		0.0459272	[0.034-0.058] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4035251	4035252	rs147841808	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large LDL	115,082 European ancestry individuals	NA	6p21.32		rs147841808-C	0.867699	2E-15		0.0492534	[0.037-0.061] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4035251	4035252	rs147841808	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in IDL	115,082 European ancestry individuals	NA	6p21.32		rs147841808-C	0.867699	8E-17		0.0499703	[0.038-0.062] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4035251	4035252	rs147841808	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small LDL	115,082 European ancestry individuals	NA	6p21.32		rs147841808-C	0.867699	2E-13		0.0454527	[0.033-0.058] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4035251	4035252	rs147841808	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large LDL	115,082 European ancestry individuals	NA	6p21.32		rs147841808-C	0.867699	3E-14		0.0463596	[0.034-0.058] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4035251	4035252	rs147841808	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in LDL	115,082 European ancestry individuals	NA	6p21.32		rs147841808-C	0.867699	3E-14		0.0468543	[0.035-0.059] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4035251	4035252	rs147841808	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in IDL	115,082 European ancestry individuals	NA	6p21.32		rs147841808-C	0.867699	4E-14		0.0455951	[0.034-0.057] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4035251	4035252	rs147841808	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Clinical LDL cholesterol levels	115,082 European ancestry individuals	NA	6p21.32		rs147841808-C	0.867699	4E-16		0.0503325	[0.038-0.062] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4035251	4035252	rs147841808	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium VLDL	115,082 European ancestry individuals	NA	6p21.32		rs147841808-C	0.867699	7E-22		0.0592176	[0.047-0.071] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4035251	4035252	rs147841808	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in IDL	115,082 European ancestry individuals	NA	6p21.32		rs147841808-C	0.867699	2E-12		0.0422918	[0.031-0.054] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4035251	4035252	rs147841808	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in IDL	115,082 European ancestry individuals	NA	6p21.32		rs147841808-C	0.867699	5E-13		0.0434275	[0.032-0.055] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4035397	4035398	rs553685714	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	6p21.32	HLA-DQA1	rs553685714-G	0.00566900000000004	5E-30		0.24839339	[0.21-0.29] unit increase	Affymetrix [93095623] (imputed)	N
615	chr6_ssto_hap7	4035397	4035398	rs553685714	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	6p21.32	HLA-DQA1	rs553685714-G	0.005664	1E-34		0.2682929	[0.23-0.31] unit decrease	Affymetrix [93095623] (imputed)	N
615	chr6_ssto_hap7	4035581	4035582	rs3104371	34536413	Daya M	2021-09-15	J Allergy Clin Immunol	Multi-ethnic genome-wide and HLA association study of total serum IgE.	IgE levels	5,008 African American individuals, 12,908 European ancestry individuals, 3,985 Hispanic individuals	NA	6p21.32		rs3104371-G	0.17	4E-18				Affymetrix, Illumina [NR] (imputed)	N
615	chr6_ssto_hap7	4035713	4035714	rs9272219	32792643	Romero-Hidalgo S	2020-08-13	Sci Rep	Native American ancestry significantly contributes to neuromyelitis optica susceptibility in the admixed Mexican population.	Neuromyelitis optica	164 Mexican cases, 1,208 Mexican controls	NA	6p21.32	HLA-DQA1	rs9272219-A	0.42	8E-10		2.48	[1.86-3.32]	Illumina [252805]	N
615	chr6_ssto_hap7	4035713	4035714	rs9272219	19571809	Shi J	2009-07-01	Nature	Common variants on chromosome 6p22.1 are associated with schizophrenia.	Schizophrenia	2,681 European ancestry cases, 2,653 European ancestry controls, 1,286 African American cases, 973 African American controls	5,327 European ancestry cases, 16,424 European ancestry controls	6p21.32	HLA-DQA1	rs9272219-G	0.72	7E-8	(EA)	1.14	[NR]	Affymetrix [up to 843798]	N
615	chr6_ssto_hap7	4035840	4035841	rs9272226	34212547	An J	2021-07-01	Allergy Asthma Immunol Res	Genome-Wide Association Study of Korean Asthmatics: A Comparison With UK Asthmatics.	Adult asthma	1,386 Korean ancestry cases, 5,205 Korean ancestry controls	NA	6p21.32		rs9272226-C	0.43	6E-7		1.27	[1.16-1.4]	Affymetrix [4922160] (imputed)	N
615	chr6_ssto_hap7	4035926	4035927	rs3104369	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CXCL2;CXCL3	5,366 Icelandic ancestry individuals	NA	6p21.32		rs3104369-T	0.3681	6E-26		0.203573	[0.17-0.24] unit increase	Illumina [7506463] (imputed)	N
615	chr6_ssto_hap7	4035926	4035927	rs3104369	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD45RA+ CD8+ T cell Absolute Count	3,395 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs3104369-C	0.7732	1E-9		0.1747	[0.12-0.23] unit increase	Illumina [18332267] (imputed)	N
615	chr6_ssto_hap7	4035926	4035927	rs3104369	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs3104369-?	NR	1E-11				Affymetrix [~ 8270000] (imputed)	N
615	chr6_ssto_hap7	4035926	4035927	rs3104369	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Adult onset asthma or type 2 diabetes	33,418 European ancestry asthma cases, 393,186 European ancestry asthma controls, 159,208 European ancestry diabetes cases and controls	NA	6p21.32	NR	rs3104369-?	NR	9E-15				Affymetrix [up to 8270000] (imputed)	N
615	chr6_ssto_hap7	4035927	4035928	rs17205170	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	6p21.32	HLA-DQA1	rs17205170-?	NR	1E-44		0.0464	[0.041-0.052] unit increase	Affymetrix [5701386] (imputed)	N
615	chr6_ssto_hap7	4036075	4036076	rs17205212	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	334,468 European ancestry, NR ancestry individuals	NA	6p21.32		rs17205212-?	NR	5E-8				Affymetrix [NR] (imputed)	N
615	chr6_ssto_hap7	4036110	4036110	rs139299944	33204752	Butler-Laporte G	2020-09-24	Open Forum Infect Dis	Genetic Determinants of Antibody-Mediated Immune Responses to Infectious Diseases Agents: A Genome-Wide and HLA Association Study.	Human herpes virus 7 U14 antibody levels	8,528 White British ancestry individuals	NA	6p21.32	HLA-DQA1	rs139299944-C	0.658	4E-12		0.11	[0.079-0.141] unit increase	NR [25472218] (imputed)	N
615	chr6_ssto_hap7	4036234	4036235	rs9272242	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4 on Effector Memory CD4+ T cell	2,912 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9272242-C	0.6302	4E-12		0.2215	[0.16-0.28] unit increase	Illumina [17945888] (imputed)	N
615	chr6_ssto_hap7	4036316	4036317	rs9272245	33794208	Bowden SJ	2021-04-01	Lancet Oncol	Genetic variation in cervical preinvasive and invasive disease: a genome-wide association study.	Cervical intraepithelial neoplasia grade 3	4,005 European ancestry cases, 145,545 European ancestry controls	NA	6p21.32	HLA-DQA1	rs9272245-?	NR	5E-12		1.44	[1.30-1.60]	Affymetrix [9600464] (imputed)	N
615	chr6_ssto_hap7	4036451	4036452	rs2040406	20453840	Sanna S	2010-05-09	Nat Genet	Variants within the immunoregulatory CBLB gene are associated with multiple sclerosis.	Multiple sclerosis	882 Sardinian cases, 872 Sardinian controls	1,775 Sardinian cases, 2,005 Sardinian controls	6p21.32	HLA-DQB1, HLA-DRB	rs2040406-G	0.26	1E-20		2.05	[NR]	Affymetrix [6607266] (imputed)	N
615	chr6_ssto_hap7	4036621	4036622	rs28393315	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	6p21.32		rs28393315-A	0.739	9E-22				Affymetrix [10369434] (imputed)	N
615	chr6_ssto_hap7	4036739	4036740	rs9272263	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DQA1	rs9272263-C	NR	2E-12		0.0278269	[0.02-0.036] unit decrease	Affymetrix [323858] (imputed)	N
615	chr6_ssto_hap7	4036739	4036740	rs9272263	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	HLA-DQA1	rs9272263-A	NR	6E-10		0.0226602	[0.015-0.03] unit decrease	Affymetrix [127266] (imputed)	N
615	chr6_ssto_hap7	4036739	4036740	rs9272263	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p21.32	HLA-DQA1	rs9272263-C	NR	2E-8		0.0221565	[0.014-0.03] unit decrease	Affymetrix [323858] (imputed)	N
615	chr6_ssto_hap7	4036765	4036766	rs62404084	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antihistamines for systemic use)	13,984 European ancestry cases, 137,652 European ancestry controls, 10,163 East Asian ancestry cases, 168,563 East Asian ancestry controls	NA	6p21.32		rs62404084-T	NR	5E-11		0.0852	[0.06-0.11] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
615	chr6_ssto_hap7	4036765	4036766	rs62404084	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6p21.32	NR	rs62404084-C	0.8069	1E-43		1.1116052	[1.1-1.13]	Affymetrix [15688218] (imputed)	N
615	chr6_ssto_hap7	4036931	4036932	rs3104367	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Asthma	28,399 European ancestry cases, 128,843 European ancestry controls	NA	6p21.32	HLA-DRB5, HLA-DQA1	rs3104367-?	NR	1E-40		1.1467891	[1.12-1.17]	Illumina [13747813] (imputed)	N
615	chr6_ssto_hap7	4037104	4037105	rs1391373	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs1391373-C	NR	2E-10		0.0185525	[0.013-0.024] unit decrease	Affymetrix [321016] (imputed)	N
615	chr6_ssto_hap7	4037240	4037241	rs1391371	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (glucocorticoids)	17,352 European ancestry cases, 188,348 European ancestry controls, 13,102 East Asian ancestry cases, 165,624 East Asian ancestry controls	NA	6p21.32		rs1391371-T	NR	1E-37		0.1229	[0.1-0.14] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
615	chr6_ssto_hap7	4037240	4037241	rs1391371	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (glucocorticoids)	17,352 European ancestry cases, 188,348 European ancestry controls	NA	6p21.32	HLA-DQA1	rs1391371-T	0.202145	2E-48		0.20412196	[0.18-0.23] unit increase	Affymetrix [7288503] (imputed)	N
615	chr6_ssto_hap7	4037240	4037241	rs1391371	30643255	Kristjansson RP	2019-01-14	Nat Genet	A loss-of-function variant in ALOX15 protects against nasal polyps and chronic rhinosinusitis.	Nasal polyps	86 European ancestry whole-genome sequenced cases, 4,280 European ancestry cases, 13,941 European ancestry whole-genome sequenced controls, 700,740 European ancestry controls	NA	6p21.32	HLA-DQA1	rs1391371-T	0.195	7E-49		1.47	[1.39-1.54]	Affymetrix, Illumina [up to 37123566] (imputed)	N
615	chr6_ssto_hap7	4037240	4037241	rs1391371	30643255	Kristjansson RP	2019-01-14	Nat Genet	A loss-of-function variant in ALOX15 protects against nasal polyps and chronic rhinosinusitis.	Chronic rhinosinusitis	251 European ancestry whole-genome sequenced cases, 5,357 European ancestry cases, 13,957 European ancestry whole-genome sequenced controls, 746,129 European ancestry controls	NA	6p21.32	HLA-DQA1	rs1391371-T	0.195	4E-15		1.22	(1.16-1.28)	Affymetrix, Illumina [up to 37123566] (imputed)	N
615	chr6_ssto_hap7	4037267	4037268	rs3129774	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	6p21.32		rs3129774-C	0.559887	9E-21		0.0390299	[0.031-0.047] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4037267	4037268	rs3129774	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs3129774-C	0.55995	2E-20		0.0386367	[0.03-0.047] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4037267	4037268	rs3129774	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6p21.32		rs3129774-C	0.55995	2E-20		0.0377974	[0.03-0.046] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4037267	4037268	rs3129774	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6p21.32		rs3129774-C	0.55995	7E-20		0.0378012	[0.03-0.046] unit increase	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4037267	4037268	rs3129774	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	6p21.32		rs3129774-C	0.559887	2E-21		0.0397338	[0.032-0.048] unit increase	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4037267	4037268	rs3129774	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6p21.32		rs3129774-C	0.55995	1E-18		0.0363057	[0.028-0.044] unit increase	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4037267	4037268	rs3129774	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	6p21.32		rs3129774-C	0.559887	1E-16		0.0342504	[0.026-0.042] unit increase	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4037267	4037268	rs3129774	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs3129774-C	0.55995	8E-20		0.0387931	[0.03-0.047] unit increase	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4037267	4037268	rs3129774	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6p21.32		rs3129774-C	0.55995	1E-19		0.0366269	[0.029-0.045] unit increase	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4037267	4037268	rs3129774	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	6p21.32		rs3129774-C	0.559954	9E-20		0.0375502	[0.029-0.046] unit increase	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4037267	4037268	rs3129774	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	6p21.32		rs3129774-C	0.559887	6E-19		0.0366323	[0.029-0.045] unit increase	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4037267	4037268	rs3129774	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs3129774-C	0.55995	8E-21		0.0392074	[0.031-0.047] unit increase	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4037267	4037268	rs3129774	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	6p21.32		rs3129774-C	0.55995	6E-20		0.0370631	[0.029-0.045] unit increase	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4037267	4037268	rs3129774	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	6p21.32		rs3129774-C	0.559954	3E-17		0.0356128	[0.027-0.044] unit increase	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4037378	4037379	rs9272309	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	6p21.32	NR	rs9272309-A	0.620099	1E-19		0.0128993	[0.01-0.016] unit increase	Affymetrix [16578495] (imputed)	N
615	chr6_ssto_hap7	4037819	4037820	rs9272346	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	6p21.32	HLA-DQA1	rs9272346-A	0.61	2E-156				NR [> 9500000] (imputed)	N
615	chr6_ssto_hap7	4037819	4037820	rs9272346	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (childhood onset)	9,433 British ancestry cases, 318,237 British ancestry controls	NA	6p21.32	NR	rs9272346-A	0.59	4E-37		1.13		Affymetrix [10894596] (imputed)	N
615	chr6_ssto_hap7	4037819	4037820	rs9272346	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (age of onset)	37,846 British ancestry individuals	NA	6p21.32	NR	rs9272346-A	0.59	7E-8				Affymetrix [10894596] (imputed)	N
615	chr6_ssto_hap7	4037819	4037820	rs9272346	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (adult onset)	21,564 British ancestry cases, 318,237 British ancestry controls	NA	6p21.32	NR	rs9272346-A	0.59	2E-47		1.13		Affymetrix [10894596] (imputed)	N
615	chr6_ssto_hap7	4037819	4037820	rs9272346	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls, 2,149 African ancestry cases, 6,055 African ancestry controls, 1,239 Japanese ancestry cases, 3,976 Japanese ancestry controls, 606 Latino cases, 792 Latino controls	NA	6p21.32	HLA-DRB1, HLA-DQA1	rs9272346-A	0.56	6E-24		1.16	[1.12-1.19]	Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
615	chr6_ssto_hap7	4037819	4037820	rs9272346	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls	NA	6p21.32	HLA-DRB1, HLA-DQA1	rs9272346-A	0.56	2E-28		0.15	[0.13-0.17] unit increase	Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
615	chr6_ssto_hap7	4037819	4037820	rs9272346	27130862	Sarnowski C	2016-04-06	J Allergy Clin Immunol	Identification of a new locus at 16q12 associated with time to asthma onset.	Asthma (time to onset)	5,462 European ancestry cases, 8,424 European ancestry controls	NA	6p21.32	HLA-DQA1	rs9272346-A	0.59	2E-8		1.13	[1.08-1.17]	Illumina [2387926] (imputed)	N
615	chr6_ssto_hap7	4037819	4037820	rs9272346	23181788	Lasky-Su J	2012-12-04	Clin Exp Allergy	HLA-DQ strikes again: genome-wide association study further confirms HLA-DQ in the diagnosis of asthma among adults.	Asthma	Up to 1,238 European ancestry cases, up to 2,617 European ancestry controls	Up to 1,837 European ancestry cases, up to 3,803 European ancestry controls, up to 2,806 cases, up to 2,150 controls, up to 603 Costa Rican ancestry cases and their parents	6p21.32	HLA-DQA1	rs9272346-?	NR	2E-8	(Adult)			Affymetrix [455089]	N
615	chr6_ssto_hap7	4037819	4037820	rs9272346	18978792	Cooper JD	2008-11-02	Nat Genet	Meta-analysis of genome-wide association study data identifies additional type 1 diabetes risk loci.	Type 1 diabetes	3,561 European ancestry cases, 4,646 European ancestry controls	6,225 European ancestry cases, 6,946 European ancestry controls, 3,064 European ancestry trios from 2,828 families	6p21.32	HLA	rs9272346-G	NR	6E-129				Affymetrix [up to 335565]	N
615	chr6_ssto_hap7	4037819	4037820	rs9272346	17554300	Wellcome Trust Case Control Consortium	2007-06-07	Nature	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Type 1 diabetes	1,963 European ancestry cases, 2,938 European ancestry controls	(see Todd 2007)	6p21.32	MHC	rs9272346-G	0.61	5E-134		5.49	[4.83-6.24]	Affymetrix [469557]	N
615	chr6_ssto_hap7	4038101	4038102	rs9272371	32737300	Sallah N	2020-07-31	Nat Commun	Distinct genetic architectures and environmental factors associate with host response to the ?2-herpesvirus infections.	Anti-Epstein-Barr virus nuclear antigen (EBNA) IgG levels	4,365 Ugandan ancestry individuals	2,162  European ancestry individuals	6p21.32	HLA-DQA1	rs9272371-C	0.3	4E-44	(Ugandan)	0.36	[0.32-0.40] unit decrease	Illumina [14929118] (imputed)	N
615	chr6_ssto_hap7	4038101	4038102	rs9272371	29868224	Sallah N	2017-11-27	Glob Health Epidemiol Genom	Whole-genome association study of antibody response to Epstein-Barr virus in an African population: a pilot.	Epstein-Barr virus immune response (multivariate analysis)	1,473 Ugandan ancestry individuals	NA	6p21.32	HLA-DQA1	rs9272371-C	0.305	6E-21		0.36	[0.27-0.44] unit decrease	Illumina [~ 17000000] (imputed)	N
615	chr6_ssto_hap7	4038101	4038102	rs9272371	29868224	Sallah N	2017-11-27	Glob Health Epidemiol Genom	Whole-genome association study of antibody response to Epstein-Barr virus in an African population: a pilot.	Epstein Barr virus nuclear antigen 1 IgG seropositivity	1,201 Ugandan ancestry cases, 361 Ugandan ancestry controls	NA	6p21.32	HLA-DQA1	rs9272371-?	0.695	4E-10		1.12	[1.08-1.16]	Illumina [~ 17000000] (imputed)	N
615	chr6_ssto_hap7	4038101	4038102	rs9272371	29868224	Sallah N	2017-11-27	Glob Health Epidemiol Genom	Whole-genome association study of antibody response to Epstein-Barr virus in an African population: a pilot.	Epstein Barr virus nuclear antigen 1 IgG levels	1,473 Ugandan ancestry individuals, 2,162 European ancestry individuals	NA	6p21.32	HLA-DQA1	rs9272371-C	0.305	3E-17	(AA)	0.36	[0.26-0.42] unit decrease	Illumina [up to 17000000] (imputed)	N
615	chr6_ssto_hap7	4038952	4038953	rs9272451	33549134	Adolphe C	2021-02-06	Genome Med	Genetic and functional interaction network analysis reveals global enrichment of regulatory T cell genes influencing basal cell carcinoma susceptibility.	Basal cell carcinoma	17,416 European ancestry cases, 375,455 European ancestry controls	NA	6p21.32	HLA-DQA1	rs9272451-G	0.386296	4E-21		0.10671105	[0.085-0.129] unit decrease	Affymetrix [7260263] (imputed)	N
615	chr6_ssto_hap7	4038959	4038960	rs2213287	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	6p21.32		rs2213287-?	NR	5E-9		0.00544481	[0.0036-0.0073] unit decrease	NR [NR]	N
615	chr6_ssto_hap7	4039335	4039336	rs2187668	28008999	Ostrowski J	2016-12-23	Sci Rep	Genetic architecture differences between pediatric and adult-onset inflammatory bowel diseases in the Polish population.	Ulcerative colitis	269 Polish ancestry child cases, 259 Polish ancestry adult cases, 582 Polish ancestry controls	121 Polish ancestry child cases, 85 Polish ancestry adult cases, 352 Polish ancestry controls	6p21.32	HLA-DQA1	rs2187668-?		4E-6	(Adults)	2.21266	[1.54-3.12]	Illumina [2612357]	N
615	chr6_ssto_hap7	4039335	4039336	rs2187668	28008999	Ostrowski J	2016-12-23	Sci Rep	Genetic architecture differences between pediatric and adult-onset inflammatory bowel diseases in the Polish population.	Inflammatory bowel disease	622 Polish ancestry child cases, 496 Polish ancestry adult cases, 582 Polish ancestry controls	192 Polish ancestry child cases, 185 Polish ancestry adult cases, 352 Polish ancestry controls	6p21.32	HLA-DQA1	rs2187668-?	NR	2E-7	(Adult)	1.9647566	[1.52-2.56]	Illumina [2612357]	N
615	chr6_ssto_hap7	4039335	4039336	rs2187668	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Diastolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	6p21.32	BAT2, BAT5	rs2187668-T	0.126	4E-11		0.372	[0.26-0.48] mm Hg decrease	Affymetrix, Illumina, Perlegen [128272]	N
615	chr6_ssto_hap7	4039335	4039336	rs2187668	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Diastolic blood pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	6p21.32	HLA-DQB1	rs2187668-T	0.1281	8E-6		0.0258	unit decrease	Illumina [242296]	N
615	chr6_ssto_hap7	4039335	4039336	rs2187668	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p21.32	HLA-DQA1	rs2187668-A	0.359	5E-36		3.4	[2.24-5.17]	Illumina [118177]	N
615	chr6_ssto_hap7	4039335	4039336	rs2187668	26525574	Westerlind H	2015-11-02	Gut	Dense genotyping of immune-related loci identifies HLA variants associated with increased risk of collagenous colitis.	Collagenous colitis	247 European ancestry cases, 3969 European ancestry controls	67 European ancestry cases, 330 European ancestry controls	6p21.32	HLA	rs2187668-?	0.126	2E-11		2.06	[1.67-2.55]	Illumina [110634]	N
615	chr6_ssto_hap7	4039335	4039336	rs2187668	26316170	Demirci FY	2015-08-28	Arthritis Rheumatol	Identification of a New Susceptibility Locus for Systemic Lupus Erythematosus on Chromosome 12 in Individuals of European Ancestry.	Systemic lupus erythematosus	661 European ancestry cases, 487 European ancestry controls	4,467 European ancestry cases, 9,114 European ancestry controls	6p21.32	HLA-DQA1	rs2187668-?	NR	1E-9				Affymetrix [up to 700598]	N
615	chr6_ssto_hap7	4039335	4039336	rs2187668	25827949	Kunz M	2015-05-04	Exp Dermatol	Genome-wide association study identifies new susceptibility loci for cutaneous lupus erythematosus.	Cutaneous lupus erythematosus	151 European ancestry cases, 1,288 European ancestry controls	219 European ancestry cases, 262 European ancestry controls	6p21.32	HLA-DQA1	rs2187668-T	0.107	4E-10		2.93	[2.18-3.95]	Affymetrix [906600]	N
615	chr6_ssto_hap7	4039335	4039336	rs2187668	24768677	de Boer YS	2014-04-23	Gastroenterology	Genome-wide association study identifies variants associated with autoimmune hepatitis type 1.	Autoimmune hepatitis type-1	649 European ancestry cases, 13,436 European ancestry controls	451 European ancestry cases, 4,103 European ancestry controls	6p21.32	HLA-DQA1	rs2187668-?	0.15	2E-78		2.9	[2.60-3.40]	Illumina [254006]	N
615	chr6_ssto_hap7	4039335	4039336	rs2187668	21408207	Chung SA	2011-03-03	PLoS Genet	Differential genetic associations for systemic lupus erythematosus based on anti-dsDNA autoantibody production.	Systemic lupus erythematosus	811 anti-dsDNA positive European ancestry cases, 906 anti-dsDNA negative European ancestry cases, 4,813 European ancestry controls	NA	6p21.32	HLA-DR3	rs2187668-A	0.12	6E-28	(anti-dsDNA +)	2.23	[1.94-2.57]	Illumina [421318] (imputed)	N
615	chr6_ssto_hap7	4039335	4039336	rs2187668	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.32	HLA-DQA1	rs2187668-A	0.1297	8E-93		4.32	[NR]	Illumina [242824]	N
615	chr6_ssto_hap7	4039335	4039336	rs2187668	20694011	Ferreira RC	2010-08-08	Nat Genet	Association of IFIH1 and other autoimmunity risk alleles with selective IgA deficiency.	Immunoglobulin A	430 European ancestry cases, 1,090 European ancestry controls	342 European ancestry cases, 886 European ancestry controls	6p21.32	HLA-DRB1	rs2187668-A	0.13	2E-33		2.53	[2.17-2.95]	Illumina [2057134] (imputed)	N
615	chr6_ssto_hap7	4039335	4039336	rs2187668	20190752	Dubois PC	2010-02-28	Nat Genet	Multiple common variants for celiac disease influencing immune gene expression.	Celiac disease	4,533 European ancestry cases, 10,750 European ancestry controls	4,918 European ancestry cases, 5,684 European ancestry controls	6p21.32	HLA-DQB1, HLA-DQA1	rs2187668-A	0.26	1E-50		6.23	[5.95-6.52]	Illumina [292387]	N
615	chr6_ssto_hap7	4039335	4039336	rs2187668	18204098	Hom G	2008-01-20	N Engl J Med	Association of systemic lupus erythematosus with C8orf13-BLK and ITGAM-ITGAX.	Systemic lupus erythematosus	1,311 European ancestry cases, 3,340 European ancestry controls	793 European ancestry cases, 857 European ancestry controls	6p21.32	HLA-DQA1	rs2187668-A	0.11	3E-21				Illumina [502033]	N
615	chr6_ssto_hap7	4039335	4039336	rs2187668	17558408	van Heel DA	2007-06-10	Nat Genet	A genome-wide association study for celiac disease identifies risk variants in the region harboring IL2 and IL21.	Celiac disease	778 European ancestry cases, 1,422 European ancestry controls	991 European ancestry cases, 1,489 European ancestry controls	6p21.32	HLA-DQA1	rs2187668-A	0.14	1E-19		7.04	[6.08-8.15]	Illumina [310605]	N
615	chr6_ssto_hap7	4039692	4039693	rs9272502	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Asthma	38,369 European ancestry cases, 411,131 European ancestry controls, 13,015 East Asian ancestry cases, 162,933 East Asian ancestry controls	NA	6p21.32		rs9272502-T	NR	2E-70		0.1424	[0.13-0.16] unit increase	Affymetrix, Illumina [25837673] (imputed)	N
615	chr6_ssto_hap7	4039761	4039762	rs9272505	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	334,944 European ancestry, NR ancestry individuals	NA	6p21.32		rs9272505-?	NR	5E-8				Affymetrix [NR] (imputed)	N
615	chr6_ssto_hap7	4039926	4039927	rs9272521	33893285	Guindo-Martinez M	2021-04-23	Nat Commun	The impact of non-additive genetic associations on age-related complex diseases.	Asthma	9,209 European ancestry cases, 47,428 European ancestry controls	NA	6p21.32		rs9272521-A	0.436944	6E-15		1.15		Affymetrix [15607971] (imputed)	N
615	chr6_ssto_hap7	4040011	4040012	rs28680981	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.32		rs28680981-G	0.738	3E-67				Affymetrix [10369434] (imputed)	N
615	chr6_ssto_hap7	4040071	4040072	rs9272532	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.32		rs9272532-C	0.77	2E-33				Affymetrix [10369434] (imputed)	N
615	chr6_ssto_hap7	4040184	4040185	rs9272535	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	6p21.32	HLA-DQA1	rs9272535-A	0.2454	6E-30		0.04727792	[0.039-0.055] unit decrease	Affymetrix [~ 2500000] (imputed)	N
615	chr6_ssto_hap7	4040184	4040185	rs9272535	21131588	Slager SL	2010-12-03	Blood	Genome-wide association study identifies a novel susceptibility locus at 6p21.3 among familial CLL.	Chronic lymphocytic leukemia	407 European ancestry cases, 296 European ancestry controls	252 European ancestry cases, 965 European ancestry controls	6p21.32	HLA-DQA1	rs9272535-A	0.27	9E-8		1.61	[1.35-1.92]	Affymetrix [827777]	N
615	chr6_ssto_hap7	4040306	4040307	rs9272544	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	6p21.32	HLA-DQA1	rs9272544-A	0.4858	8E-11		0.02325084	[0.016-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
615	chr6_ssto_hap7	4040313	4040314	rs9272545	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6p21.32	NR	rs9272545-T	0.6122	1E-8		1.0357327	[1.02-1.05]	Affymetrix [15688218] (imputed)	N
615	chr6_ssto_hap7	4040313	4040314	rs9272545	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	6p21.32	NR	rs9272545-?	NR	7E-288	(conditional)			Affymetrix [15688218] (imputed)	N
615	chr6_ssto_hap7	4040340	4040341	rs28383364	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	6p21.32	BTNL2, C6orf10, HCG23, HLA-DOB, HLA-DQA1, HLA-DQA2, HLA-DQB1, HLA-DQB2, HLA-DRA, HLA-DRB1, HLA-DRB5, HLA-DRB6, TAP2	rs28383364-A	0.802222	3E-17		1.0942891	[1.07-1.12]	Affymetrix [8274727] (imputed)	N
615	chr6_ssto_hap7	4040369	4040370	rs9272546	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	6p21.32		rs9272546-T	0.341931	9E-18		0.0373707	[0.029-0.046] unit decrease	NR [11722792] (imputed)	N
615	chr6_ssto_hap7	4040447	4040448	rs28802989	29036319	Qi H	2017-09-26	Hum Mol Genet	Discovery of susceptibility loci associated with tuberculosis in Han Chinese.	Tuberculosis	972 Chinese ancestry cases, 1,316 Gambian ancestry cases, 1,537 Chinese ancestry controls, 1,382 Gambian ancestry controls	NA	6p21.32	NR	rs28802989-?	NR	2E-6				Illumina [7333833] (imputed)	N
615	chr6_ssto_hap7	4040602	4040603	rs9272566	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic glomerulonephritis	566 European ancestry cases, 475,255 European ancestry controls, 210 East Asian ancestry cases, 174,345 East Asian ancestry controls	NA	6p21.32		rs9272566-A	NR	3E-11		0.6694	[0.47-0.87] unit increase	Affymetrix, Illumina [25844108] (imputed)	N
615	chr6_ssto_hap7	4040602	4040603	rs9272566	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.32		rs9272566-G	0.715	3E-45				Affymetrix [10369434] (imputed)	N
615	chr6_ssto_hap7	4040666	4040667	rs28383378	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.32		rs28383378-C	0.653	3E-62				Affymetrix [10369434] (imputed)	N
615	chr6_ssto_hap7	4040680	4040681	rs28383380	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.32		rs28383380-C	0.652	2E-29				Affymetrix [10369434] (imputed)	N
615	chr6_ssto_hap7	4040796	4040797	rs35248896	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs35248896-T	NR	7E-13		0.0255337	[0.019-0.033] unit increase	Affymetrix [319769] (imputed)	N
615	chr6_ssto_hap7	4040796	4040797	rs35248896	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs35248896-T	NR	2E-12		0.0251292	[0.018-0.032] unit increase	Affymetrix [319769] (imputed)	N
615	chr6_ssto_hap7	4040796	4040797	rs35248896	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs35248896-T	NR	7E-12		0.0246503	[0.018-0.032] unit increase	Affymetrix [321169] (imputed)	N
615	chr6_ssto_hap7	4043224	4043225	rs707951	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:0_[M+H]1+/Phosphatidylethanolamine_35:0_[M+H]1+/Phosphatidate_37:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	6p21.32		rs707951-T	NR	4E-10		0.0768107	[0.053-0.101] unit decrease	Affymetrix [87696910] (imputed)	N
615	chr6_ssto_hap7	4043553	4043553	rs748519761	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	6p21.32		rs748519761-T	0.35406	4E-6		0.033083	[0.019-0.047] unit increase	Affymetrix [15580782] (imputed)	N
615	chr6_ssto_hap7	4043659	4043660	rs9272775	33143745	Andlauer TFM	2020-11-04	BMC Med	Treatment- and population-specific genetic risk factors for anti-drug antibodies against interferon-beta: a GWAS.	Neutralising antibody response to interferon beta therapy in multiple sclerosis (antibody titre; IFN?-1b subcutaneous)	up to 2,000 German and Swedish ancestry individuals	up to 757 German and Swedish ancestry individuals	6p21.32		rs9272775-C	0.23	3E-24		0.41	[0.33-0.49] unit increase	Illumina [8550834] (imputed)	N
615	chr6_ssto_hap7	4043659	4043660	rs9272775	33143745	Andlauer TFM	2020-11-04	BMC Med	Treatment- and population-specific genetic risk factors for anti-drug antibodies against interferon-beta: a GWAS.	Binding antibody response to interferon beta therapy in multiple sclerosis (antibody levels; IFN?-1b subcutaneous)	up to 2,000 German and Swedish ancestry individuals	up to 757 German and Swedish ancestry individuals	6p21.32		rs9272775-C	NR	2E-19		0.40715143	[0.32-0.5] unit increase	Illumina [8550834] (imputed)	N
615	chr6_ssto_hap7	4043751	4043752	rs9272780	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQA1	rs9272780-A	NR	7E-11		0.0186986	[0.013-0.024] unit decrease	Affymetrix [321016] (imputed)	N
615	chr6_ssto_hap7	4043751	4043752	rs9272780	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DQA1	rs9272780-A	NR	3E-14		0.0237876	[0.018-0.03] unit decrease	Affymetrix [323123] (imputed)	N
615	chr6_ssto_hap7	4043751	4043752	rs9272780	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p21.32	HLA-DQA1	rs9272780-A	0.400343	1E-21		0.02813841	[0.022-0.034] unit increase	Affymetrix [93095623] (imputed)	N
615	chr6_ssto_hap7	4043838	4043839	rs1048372	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	HLA-DQA1	rs1048372-C	0.609	5E-12	(Amelogenin, X isoform, AMELX.8578.45.3)	0.18	[0.12-0.24] unit increase	Affymetrix [10572788] (imputed)	N
615	chr6_ssto_hap7	4043847	4043848	rs1048381	33204752	Butler-Laporte G	2020-09-24	Open Forum Infect Dis	Genetic Determinants of Antibody-Mediated Immune Responses to Infectious Diseases Agents: A Genome-Wide and HLA Association Study.	Varicella zoster virus glycoproteins E and I antibody levels	7,595 White British ancestry individuals	NA	6p21.32	HLA-DQA1	rs1048381-G		6E-25		0.22	[0.18-0.26] unit decrease	NR [25472218] (imputed)	N
615	chr6_ssto_hap7	4043863	4043864	rs9260	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DQA1	rs9260-A	NR	8E-14		0.0290366	[0.021-0.037] unit increase	Affymetrix [323123] (imputed)	N
615	chr6_ssto_hap7	4044499	4044500	rs28538060	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.32		rs28538060-G	0.858	1E-17				Affymetrix [10369434] (imputed)	N
615	chr6_ssto_hap7	4044721	4044722	rs9272975	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs9272975-A	0.217	1E-55	(HLA class II histocompatibility antigen, DQ alpha 2 chain, HLA.DQA2.7757.5.3)	0.52	[0.46-0.58] unit decrease	Affymetrix [10572788] (imputed)	N
615	chr6_ssto_hap7	4044818	4044819	rs9272989	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	6p21.32		rs9272989-C	0.30783	5E-6		0.033104	[0.019-0.047] unit increase	Affymetrix [15580782] (imputed)	N
615	chr6_ssto_hap7	4045044	4045045	rs9273012	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs9273012-?	NR	3E-16				Affymetrix [~ 8270000] (imputed)	N
615	chr6_ssto_hap7	4045097	4045098	rs4526236	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hepatic cancer	2,122 East Asian ancestry cases, 159,201 East Asian ancestry controls	NA	6p21.32		rs4526236-A	0.174389152	5E-9		0.24874051	[0.17-0.33] unit decrease	Illumina [13427386] (imputed)	N
615	chr6_ssto_hap7	4045367	4045368	rs9273039	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	6p21.32	HLA-DQA1	rs9273039-T	0.2667	1E-25		0.04249746	[0.035-0.05] unit decrease	Affymetrix [~ 2500000] (imputed)	N
615	chr6_ssto_hap7	4045576	4045577	rs9273062	29534301	Nishida N	2018-03-13	Hepatology	Key HLA-DRB1-DQB1 haplotypes and role of the BTNL2 gene for response to a hepatitis B vaccine.	Response to hepatitis B vaccine	107 Japanese ancestry low responder individuals, 351 Japanese ancestry intermediate responder individuals, 735 Japanese ancestry high responder individuals	NA	6p21.32	HLA-DQB1	rs9273062-?		2E-10		0.165	unit increase	Affymetrix [427664]	N
615	chr6_ssto_hap7	4045716	4045717	rs9273076	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	NA	6p21.32	HLA-DQ1	rs9273076-T		8E-13	(conditional)	1.3	[NR]	Illumina [> 644674] (imputed)	N
615	chr6_ssto_hap7	4045812	4045813	rs6927022	33204752	Butler-Laporte G	2020-09-24	Open Forum Infect Dis	Genetic Determinants of Antibody-Mediated Immune Responses to Infectious Diseases Agents: A Genome-Wide and HLA Association Study.	Epstein-Barr virus EBNA-1 antibody levels	7,972 White British ancestry individuals	NA	6p21.32	HLA-DQA1	rs6927022-A	0.505	2E-76		0.3	[0.27-0.33] unit increase	NR [25472218] (imputed)	N
615	chr6_ssto_hap7	4045812	4045813	rs6927022	32737300	Sallah N	2020-07-31	Nat Commun	Distinct genetic architectures and environmental factors associate with host response to the ?2-herpesvirus infections.	Anti-Epstein-Barr virus nuclear antigen (EBNA) IgG levels	4,365 Ugandan ancestry individuals	2,162  European ancestry individuals	6p21.32	HLA-DRB1	rs6927022-A	0.73	1E-21	(Ugandan)	0.26	[0.22-0.30] unit increase	Illumina [14929118] (imputed)	N
615	chr6_ssto_hap7	4045812	4045813	rs6927022	32737300	Sallah N	2020-07-31	Nat Commun	Distinct genetic architectures and environmental factors associate with host response to the ?2-herpesvirus infections.	Anti-Epstein-Barr virus nuclear antigen (EBNA) IgG levels	4,365 Ugandan ancestry individuals	2,162  European ancestry individuals	6p21.32	HLA-DRB1	rs6927022-A	0.59	7E-26	(EA)	0.16	[0.16-0.16] unit increase	Illumina [14929118] (imputed)	N
615	chr6_ssto_hap7	4045812	4045813	rs6927022	29868224	Sallah N	2017-11-27	Glob Health Epidemiol Genom	Whole-genome association study of antibody response to Epstein-Barr virus in an African population: a pilot.	Epstein Barr virus nuclear antigen 1 IgG levels	1,473 Ugandan ancestry individuals, 2,162 European ancestry individuals	NA	6p21.32	HLA-DRB1	rs6927022-A	0.59	7E-26	(EA)	0.16	[0.13-0.19] unit increase	Illumina [up to 17000000] (imputed)	N
615	chr6_ssto_hap7	4045812	4045813	rs6927022	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Ulcerative colitis	12,366 European and unknown ancestry cases, 33,609 European and unknown ancestry controls	NA	6p21.32	C6orf15, CDSN, PSORS1C2, HCG27, HLA-C, HLA-B, MCCD1, ATP6V1G2, LTA, TNF, LTB, NCR3, AIF1, BAG6, C6orf47, GPANK1, LY6G5B, LY6G5C, LY6G6F, MEGT1, LY6G6E, LY6G6D, DDAH2, SAPCD1, HSPA1L, HSPA1B, C6orf48, NEU1, ZBTB12, NELFE, DXO, AL645922.1, CYP21A2, FKBPL, PRRT1, EGFL8, RNF5, AGER, PBX2, HLA-DRA, HLA-DQB1, HLA-DQA2, HLA-DQB2, PSORS1C1, CCHCR1, TCF19, POU5F1, MICA, MICB, DDX39B, ATP6V1G2-DDX39B, NFKBIL1, LST1, PRRC2A, APOM, CSNK2B, CSNK2B-LY6G5B-1181, ABHD16A, XXbac-BPG32J3.20, C6orf25, LY6G6C, CLIC1, VWA7, VARS, LSM2, HSPA1A, SLC44A4, C2, CFB, SKIV2L, STK19, C4A, C4B, TNXB, ATF6B, PPT2, PPT2-EGFL8, AGPAT1, GPSM3, NOTCH4, C6orf10, HLA-DRB5, HLA-DRB1, HLA-DQA1, MSH5, MSH5-SAPCD1, EHMT2, BTNL2	rs6927022-?		5E-65				Illumina [9578670] (imputed)	N
615	chr6_ssto_hap7	4045812	4045813	rs6927022	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	6p21.32	C6orf15, CDSN, PSORS1C2, HCG27, HLA-C, HLA-B, MCCD1, ATP6V1G2, LTA, TNF, LTB, NCR3, AIF1, BAG6, C6orf47, GPANK1, LY6G5B, LY6G5C, LY6G6F, MEGT1, LY6G6E, LY6G6D, DDAH2, SAPCD1, HSPA1L, HSPA1B, C6orf48, NEU1, ZBTB12, NELFE, DXO, AL645922.1, CYP21A2, FKBPL, PRRT1, EGFL8, RNF5, AGER, PBX2, HLA-DRA, HLA-DQB1, HLA-DQA2, HLA-DQB2, PSORS1C1, CCHCR1, TCF19, POU5F1, MICA, MICB, DDX39B, ATP6V1G2-DDX39B, NFKBIL1, LST1, PRRC2A, APOM, CSNK2B, CSNK2B-LY6G5B-1181, ABHD16A, XXbac-BPG32J3.20, C6orf25, LY6G6C, CLIC1, VWA7, VARS, LSM2, HSPA1A, SLC44A4, C2, CFB, SKIV2L, STK19, C4A, C4B, TNXB, ATF6B, PPT2, PPT2-EGFL8, AGPAT1, GPSM3, NOTCH4, C6orf10, HLA-DRB5, HLA-DRB1, HLA-DQA1, MSH5, MSH5-SAPCD1, EHMT2, BTNL2	rs6927022-?		2E-31				Illumina [9725440] (imputed)	N
615	chr6_ssto_hap7	4045812	4045813	rs6927022	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Ulcerative colitis	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls	6p21.32	HLA-DQB1, HLA-DRA, HLA-DRB1, HLA-DQA1	rs6927022-A	0.535	5E-133		1.444	[1.387-1.503]	Affymetrix, Illumina [1230000] (imputed)	N
615	chr6_ssto_hap7	4045845	4045846	rs6926894	31959851	Olafsdottir TA	2020-01-20	Nat Commun	Eighty-eight variants highlight the role of T cell regulation and airway remodeling in asthma pathogenesis.	Asthma	16,247 European ancestry cases, 346,486 European ancestry controls, 52,942 cases, 355,713 controls	NA	6p21.32	HLA-DQA1, HLA-DQB1, HLA-DRB1, HLA-DRB6, HLA-DQA2, MIR3135B	rs6926894-C	0.59076	2E-126		1.16642	[1.15-1.18]	Affymetrix [32463443] (imputed)	N
615	chr6_ssto_hap7	4045845	4045846	rs6926894	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	6p21.32	HLA-DQA1, HLA-DQB1	rs6926894-T	0.4094	2E-100				Affymetrix [15688218] (imputed)	N
615	chr6_ssto_hap7	4045877	4045878	rs200930495	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs200930495-A	0.148	5E-31	(Complement C4, C4A.C4B.4481.34.2)	0.45	[0.37-0.53] unit increase	Affymetrix [10572788] (imputed)	N
615	chr6_ssto_hap7	4046071	4046072	rs9273113	32141793	Garman L	2020-03-06	Ocul Immunol Inflamm	Genome-Wide Association Study of Ocular Sarcoidosis Confirms HLA Associations and Implicates Barrier Function and Autoimmunity in African Americans.	Ocular sarcoidosis	260 African American cases, 1,551 African American controls	NA	6p21.32	NR	rs9273113-A	NR	6E-6		1.57	[1.29-1.91]	Illumina [13976150] (imputed)	N
615	chr6_ssto_hap7	4046149	4046150	rs9273123	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	6p21.32	HLA-DQA1	rs9273123-A	NR	4E-105		1.187	[1.17-1.2]	Affymetrix [9000000] (imputed)	N
615	chr6_ssto_hap7	4046714	4046715	rs9273177	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.32	HLA-DQA1, HLA-DQB1	rs9273177-?		1E-13		1.1363636	[1.1-1.16]	Affymetrix, Illumina [NR]	N
615	chr6_ssto_hap7	4046831	4046832	rs9273190	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs9273190-A	0.364	1E-54	(conditional)	1.79	[1.72-1.86]	Illumina [11270530] (imputed)	N
615	chr6_ssto_hap7	4054612	4054613	rs9273349	20860503	Moffatt MF	2010-09-23	N Engl J Med	A large-scale, consortium-based genomewide association study of asthma.	Asthma	10,365 cases, 16,110 controls	NA	6p21.32	HLA-DQ	rs9273349-C	0.58	7E-14		1.18	[1.13-1.24]	Illumina [582892]	N
615	chr6_ssto_hap7	4054710	4054711	rs2858856	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	HLA-DQB1	rs2858856-A	NR	4E-9		0.0185689	[0.012-0.025] unit increase	Affymetrix [321114] (imputed)	N
615	chr6_ssto_hap7	4054758	4054759	rs6905282	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (multivariate analysis)	477,968 European ancestry individuals	NA	6p21.32	HLA, DQA1, DQB1	rs6905282-A	0.466	5E-28		0.05	[0.04-0.06] unit decrease	NR [NR] (imputed)	N
615	chr6_ssto_hap7	4054758	4054759	rs6905282	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (age of onset)	117,130 European ancestry individuals	NA	6p21.32	HLA-DQA1, HLA-DQB1	rs6905282-A	0.466	1E-23		0.042	[0.034-0.05] unit decrease	NR [7647814] (imputed)	N
615	chr6_ssto_hap7	4054783	4054784	rs4713570	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Malignant lymphoma	3,546 European ancestry cases, 487,257 European ancestry controls, 335 East Asian ancestry cases, 177,342 East Asian ancestry controls	NA	6p21.32		rs4713570-T	NR	1E-16		0.2256	[0.17-0.28] unit increase	Affymetrix, Illumina [25845276] (imputed)	N
615	chr6_ssto_hap7	4054873	4054874	rs7744020	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic rhinitis	18,915 European ancestry cases, 239,773 European ancestry controls	NA	6p21.32	HLA-DQB1	rs7744020-A	0.3071	4E-25		1.131	[1.106-1.157]	Affymetrix [15688218] (imputed)	N
615	chr6_ssto_hap7	4054873	4054874	rs7744020	24204295	Han F	2013-10-31	PLoS Genet	Genome wide analysis of narcolepsy in China implicates novel immune loci and reveals changes in association prior to versus after the 2009 H1N1 influenza pandemic.	Narcolepsy (age of onset)	at least 1,000 Chinese ancestry cases	NA	6p21.32	NR	rs7744020-A	0.272	8E-9		1.9	year decrease	Affymetrix [603382]	N
615	chr6_ssto_hap7	4054948	4054949	rs6905837	32390946	Liu L	2020-04-22	Front Endocrinol (Lausanne)	Twelve New Genomic Loci Associated With Bone Mineral Density.	Total body bone mineral density (MTAG)	66,628 individuals	NA	6p21.32	NR	rs6905837-C	0.95	3E-6		0.05	[0.03-0.07] unit decrease	Affymetrix, Illumina [7369691] (imputed)	N
615	chr6_ssto_hap7	4054948	4054949	rs6905837	32390946	Liu L	2020-04-22	Front Endocrinol (Lausanne)	Twelve New Genomic Loci Associated With Bone Mineral Density.	Heel bone mineral density (MTAG)	426,824 individuals	NA	6p21.32	NR	rs6905837-C	0.95	3E-8		0.03	[0.018-0.042] unit decrease	NR [7369691] (imputed)	N
615	chr6_ssto_hap7	4054992	4054993	rs6928482	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals, at least 88,461 European ancestry individuals	NA	6p21.32	HLA-DQB1	rs6928482-T	0.542	1E-6	(EA)	0.018571429	[0.011-0.026] unit increase	Illumina [1986983] (imputed)	N
615	chr6_ssto_hap7	4055015	4055016	rs9273363	30659077	Onengut-Gumuscu S	2019-01-18	Diabetes Care	Type 1 Diabetes Risk in African-Ancestry Participants and Utility of an Ancestry-Specific Genetic Risk Score.	Type 1 diabetes	1,021 African American cases, 2,928 African American controls	NA	6p21.32	MHC	rs9273363-A	0.13	5E-138		5.48	[4.80-6.27]	Illumina [114874]	N
615	chr6_ssto_hap7	4055015	4055016	rs9273363	23770605	Berndt SI	2013-06-16	Nat Genet	Genome-wide association study identifies multiple risk loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	2,179 European ancestry cases, 6,221 European ancestry controls	1,709 European ancestry cases, 6,318 European ancestry controls	6p21.32	HLA	rs9273363-A	0.27	2E-10		1.24	[NR]	Illumina [549934]	N
615	chr6_ssto_hap7	4055045	4055046	rs9273364	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Carpal tunnel syndrome	18,855 European ancestry cases, 461,346 European ancestry controls, 192 East Asian ancestry cases, 178,534 East Asian ancestry controls	NA	6p21.32		rs9273364-G	NR	1E-8		0.0702	[0.046-0.094] unit increase	Affymetrix, Illumina [25844227] (imputed)	N
615	chr6_ssto_hap7	4055045	4055046	rs9273364	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 29,0641 European ancestry controls	NA	6p21.32	HLA-DQB1	rs9273364-G	0.302909	3E-75		0.23193699	[0.21-0.26] unit increase	Affymetrix [7288503] (imputed)	N
615	chr6_ssto_hap7	4055054	4055055	rs6906021	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Angiopoietin-1 receptor levels	21,758 European ancestry individuals	9,173 individuals	6p21.32		rs6906021-T	0.56	8E-14		0.0626	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
615	chr6_ssto_hap7	4055054	4055055	rs6906021	23817571	Bonnelykke K	2013-06-30	Nat Genet	Meta-analysis of genome-wide association studies identifies ten loci influencing allergic sensitization.	Allergic sensitization	5,789 European ancestry cases, 10,056 European ancestry controls	6,114 European ancestry cases, 9,920 European ancestry controls	6p21.32	HLA-DQB1, HLA-DQA1	rs6906021-C	0.45	2E-12		1.15	[1.11-1.2]	Affymetrix, Illumina [~ 2500000] (imputed)	N
615	chr6_ssto_hap7	4055054	4055055	rs6906021	23817569	Hinds DA	2013-06-30	Nat Genet	A genome-wide association meta-analysis of self-reported allergy identifies shared and allergy-specific susceptibility loci.	Self-reported allergy	53,862 European ancestry individuals	NA	6p21.32	HLA-DQB1, HLA-DQA1	rs6906021-C	0.4749	7E-15		0.0945	[0.071-0.118] unit increase	Illumina [2400000] (imputed)	N
615	chr6_ssto_hap7	4055091	4055092	rs28407950	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6p21.32	NR	rs28407950-C	0.7564	7E-45		1.1032656	[1.09-1.12]	Affymetrix [15688218] (imputed)	N
615	chr6_ssto_hap7	4055091	4055092	rs28407950	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic disease (asthma, hay fever or eczema)	106,772 European ancestry cases, 239,773 European ancestry controls	83,335 cases, 34,934 controls	6p21.32	NR	rs28407950-C	0.7564	7E-70		1.1201972	[1.11-1.13]	Affymetrix [15688218] (imputed)	N
615	chr6_ssto_hap7	4055091	4055092	rs28407950	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (childhood onset)	9,433 British ancestry cases, 318,237 British ancestry controls	NA	6p21.32	HLA-DQA1, HLA-DQB	rs28407950-C	0.756	1E-59		1.354	[1.306-1.405]	Affymetrix [10894596] (imputed)	N
615	chr6_ssto_hap7	4055091	4055092	rs28407950	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (adult onset)	21,564 British ancestry cases, 318,237 British ancestry controls	NA	6p21.32	HLA-DQA1, HLA-DQB	rs28407950-C	0.756	8E-31		1.148	[1.121-1.175]	Affymetrix [10894596] (imputed)	N
615	chr6_ssto_hap7	4055091	4055092	rs28407950	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (antihistamines for systemic use)	13,984 European ancestry cases, 137,652 European ancestry controls	NA	6p21.32	HLA-DQB1	rs28407950-T	0.243266	1E-10		0.094664484	[0.066-0.123] unit decrease	Affymetrix [7288503] (imputed)	N
615	chr6_ssto_hap7	4055146	4055147	rs34004019	30013184	Waage J	2018-07-16	Nat Genet	Genome-wide association and HLA fine-mapping studies identify risk loci and genetic pathways underlying allergic rhinitis.	Allergic rhinitis	59,762 European and unknown ancestry cases, 152,358 European and unknown ancestry controls	60,720 European ancestry cases, 618,527 European ancestry controls	6p21.32	HLA-DQB1, HLA-DQA1	rs34004019-A	0.7331	1E-30		1.1235955	[1.11-1.15]	Affymetrix, Illumina, Perlegen [16531985] (imputed)	N
615	chr6_ssto_hap7	4055146	4055147	rs34004019	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	6p21.32	HLA-DQA1, HLA-DQB1	rs34004019-A	0.7	4E-52		1.101	[1.09-1.11]	Affymetrix, Illumina [8307659] (imputed)	N
615	chr6_ssto_hap7	4055146	4055147	rs34004019	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Allergy	66,973 European ancestry cases, 113,768 European ancestry controls	NA	6p21.32	HLA-DQB1, HLA-DQA1	rs34004019-?	NR	3E-24		1.1086475	[1.09-1.13]	Illumina [12845910] (imputed)	N
615	chr6_ssto_hap7	4055181	4055182	rs9273367	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 1 diabetes	6,447 European ancestry cases, 451,248 European ancestry controls, 1,219 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	6p21.32		rs9273367-T	NR	6E-306		0.7272	[0.69-0.77] unit increase	Affymetrix, Illumina [25837106] (imputed)	N
615	chr6_ssto_hap7	4055194	4055195	rs28414666	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	6p21.32		rs28414666-A	0.134651377	2E-27		0.1486309	[0.12-0.18] unit increase	Illumina [13429980] (imputed)	N
615	chr6_ssto_hap7	4055218	4055219	rs9273368	34737425	Mansour Aly D	2021-11-04	Nat Genet	Genome-wide association analyses highlight etiological differences underlying newly defined subtypes of diabetes.	Severe autoimmune type 2 diabetes	452 Scandinavian ancestry cases, 2,744 Scandinavian ancestry controls	NA	6p21.32	HLA-DQA1, HLA-DQB1	rs9273368-A	0.350323	7E-40		2.678	[2.314 - 3.1]	Illumina [5396854] (imputed)	N
615	chr6_ssto_hap7	4055218	4055219	rs9273368	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	6p21.32		rs9273368-A	NR	2E-49		0.1157	[0.1-0.13] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
615	chr6_ssto_hap7	4055218	4055219	rs9273368	30254083	Cousminer DL	2018-09-25	Diabetes Care	First Genome-Wide Association Study of Latent Autoimmune Diabetes in Adults Reveals Novel Insights Linking Immune and Metabolic Diabetes.	Latent autoimmune diabetes vs. type 2 diabetes	2,779 European ancestry latent autoimmune diabetes cases, 10,396 European ancestry type 2 diabetes cases	NA	6p21.32	HLA-DQB1	rs9273368-?	0.301	3E-78		2.439	[2.222-2.676]	Affymetrix, Illumina [8328843] (imputed)	N
615	chr6_ssto_hap7	4055218	4055219	rs9273368	30254083	Cousminer DL	2018-09-25	Diabetes Care	First Genome-Wide Association Study of Latent Autoimmune Diabetes in Adults Reveals Novel Insights Linking Immune and Metabolic Diabetes.	Latent autoimmune diabetes vs. type 1 diabetes	2,454 European ancestry latent autoimmune diabetes cases, 968 European ancestry type 1 diabetes cases	NA	6p21.32	HLA-DQB1	rs9273368-G	0.35	8E-40		2.99	[2.60-3.91]	Affymetrix, Illumina [8465706] (imputed)	N
615	chr6_ssto_hap7	4055235	4055236	rs9273370	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Hypothyroidism	17,558 European ancestry cases, 117,083 European ancestry controls	NA	6p21.32	HLA-DQA1, HLA-DQB1	rs9273370-?	NR	5E-34		1.1737089	[1.14-1.20]	Illumina [13676411] (imputed)	N
615	chr6_ssto_hap7	4055317	4055318	rs28539606	33731350	Nandakumar P	2021-03-17	Sci Adv	Nuclear genome-wide associations with mitochondrial heteroplasmy.	Mitochondrial heteroplasmy measurement	982,072 European ancestry individuals	NA	6p21.32	HLA-DQB1	rs28539606-G	0.147	4E-23		0.02	[0.016-0.024] unit increase	NR [57525634] (imputed)	N
615	chr6_ssto_hap7	4055342	4055343	rs9273373	24388013	Ferreira MA	2013-12-30	J Allergy Clin Immunol	Genome-wide association analysis identifies 11 risk variants associated with the asthma with hay fever phenotype.	Asthma and hay fever	6,685 European ancestry cases, 14,091 European ancestry controls	878 European ancestry cases, 2,455 European ancestry controls	6p21.32	HLA-DQB1	rs9273373-G	0.54	4E-14		1.24	[1.17-1.30]	Illumina [up to 4972397] (imputed)	N
615	chr6_ssto_hap7	4055355	4055356	rs9273374	29785011	Zhu Z	2018-05-21	Nat Genet	A genome-wide cross-trait analysis from UK Biobank highlights the shared genetic architecture of asthma and allergic diseases.	Asthma or allergic disease (pleiotropy)	14,085 European asthma cases, 25,685 European ancestry allergic diseases cases, 76,768 European ancestry controls	NA	6p21.32	HLA-DOB, HLA-DQA1, HLA-DQA2, HLA-DQB1, HLA-DQB2, HLA-DRB1, HLA-DRB6, TAP2	rs9273374-?	NR	8E-35		1.1904762		NR [74888535] (imputed)	N
615	chr6_ssto_hap7	4055480	4055481	rs12055445	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQB1	rs12055445-A	NR	2E-8		0.0159074	[0.01-0.021] unit increase	Affymetrix [321016] (imputed)	N
615	chr6_ssto_hap7	4055480	4055481	rs12055445	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DQB1	rs12055445-G	NR	1E-12		0.0218742	[0.016-0.028] unit decrease	Affymetrix [323123] (imputed)	N
615	chr6_ssto_hap7	4055480	4055481	rs12055445	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	6p21.32	NR	rs12055445-A	0.500659	5E-18		0.0175207	[0.014-0.021] unit decrease	NR [NR]	N
615	chr6_ssto_hap7	4055480	4055481	rs12055445	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling worry	372,869 European ancestry individuals	NA	6p21.32	HLA-DRA	rs12055445-A	0.498063	3E-12		6.996	unit decrease	NR [10847151] (imputed)	N
615	chr6_ssto_hap7	4055480	4055481	rs12055445	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	6p21.32	HLA-DQA1, HLA-DQB1	rs12055445-G	0.513	6E-11		0.0247074	[0.017-0.032] unit decrease	Illumina [13519193] (imputed)	N
615	chr6_ssto_hap7	4055527	4055528	rs9273375	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DQB1	rs9273375-G	NR	9E-11		0.0262281	[0.018-0.034] unit increase	Affymetrix [323123] (imputed)	N
615	chr6_ssto_hap7	4055624	4055625	rs9273379	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Alanine aminotransferase levels in excessive alcohol consumption	951 individuals	NA	6p21.32	NR	rs9273379-?	NR	2E-6		0.0267	[0.016-0.038] unit decrease	Illumina [~ 7800000] (imputed)	N
615	chr6_ssto_hap7	4055701	4055702	rs4713572	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs4713572-C	0.411	2E-15	(Rac GTPase-activating protein 1, RACGAP1.13587.10.3)	0.21	[0.15-0.27] unit increase	Affymetrix [10572788] (imputed)	N
615	chr6_ssto_hap7	4055726	4055727	rs9273386	34103634	Valette K	2021-06-08	Commun Biol	Prioritization of candidate causal genes for asthma in susceptibility loci derived from UK Biobank.	Asthma	56,167 White-British ancestry cases, 352,255 White-British ancestry controls	NA	6p21.32	HLA-DQA1, HLA-DQB1	rs9273386-C	0.588625259859572	2E-48		0.13383532	[0.12-0.15] unit increase	Affymetrix [35186738] (imputed)	N
615	chr6_ssto_hap7	4055733	4055734	rs4713573	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Juvenile rheumatoid arthritis	216 European ancestry cases, 409,001 European ancestry controls, 110 East Asian ancestry cases, 173,268 East Asian ancestry controls	NA	6p21.32		rs4713573-C	NR	3E-9		0.5903	[0.39-0.79] unit increase	Affymetrix, Illumina [25833140] (imputed)	N
615	chr6_ssto_hap7	4055840	4055841	rs28724231	30552173	Aterido A	2018-12-14	Ann Rheum Dis	Genetic variation at the glycosaminoglycan metabolism pathway contributes to the risk of psoriatic arthritis but not psoriasis.	Psoriatic arthritis	744 Spanish ancestry cases, 1,454 Spanish ancestry controls	1,430 cases, 1,417 controls	6p21.32	NR	rs28724231-?	NR	4E-11		6.62	[NR] z-score decrease	Illumina [1387382] (imputed)	N
615	chr6_ssto_hap7	4055878	4055879	rs9273401	27189021	Cook JP	2016-05-18	Eur J Hum Genet	Multi-ethnic genome-wide association study identifies novel locus for type 2 diabetes susceptibility.	Type 2 diabetes	746 African American cases, 2,825 African American controls, 743 East Asian ancestry cases, 3,992 East Asian ancestry controls, 7,111 European ancestry cases, 49,688 European ancestry controls, 1,147 Latino cases, 5,352 Latino controls	12,171 European ancestry cases, 56,862 European ancestry controls	6p21.32	MHC	rs9273401-G	0.112	2E-9		1.16	[1.11-1.22]	NR [at least 8497425] (imputed)	N
615	chr6_ssto_hap7	4055911	4055912	rs9273404	31816047	Boutin TS	2019-12-09	Hum Mol Genet	Insights into the genetic basis of retinal detachment.	Cataracts (operation)	21,679 British ancestry cases, 387,283 British ancestry controls	NA	6p21.32	HLA-DQB1	rs9273404-?	0.469	3E-8		1.0600239	[1.04-1.08]	Affymetrix [NR] (imputed)	N
615	chr6_ssto_hap7	4055911	4055912	rs9273404	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	6p21.32	HLA-DQB1	rs9273404-G	0.47	2E-11	(conditional on rs2070600)	1.08	[NR]	Affymetrix, Illumina [6224355] (imputed)	N
615	chr6_ssto_hap7	4056001	4056002	rs9273410	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p21.32	NR	rs9273410-A	0.44	7E-16		1.15	[1.11-1.19]	Affymetrix [9886854] (imputed)	N
615	chr6_ssto_hap7	4056001	4056002	rs9273410	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p21.32	NR	rs9273410-A	0.44	3E-22			[NR]	Affymetrix [9886854] (imputed)	N
615	chr6_ssto_hap7	4056001	4056002	rs9273410	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p21.32	NR	rs9273410-A	0.44	2E-21		1.13	[1.1-1.16]	Affymetrix [9886854] (imputed)	N
615	chr6_ssto_hap7	4056001	4056002	rs9273410	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	6p21.32	NR	rs9273410-A	0.44	7E-22			[NR]	Affymetrix [9886854] (imputed)	N
615	chr6_ssto_hap7	4056001	4056002	rs9273410	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in non-current smokers	16,488 European ancestry cases, 169,688 European ancestry controls	NA	6p21.32	NR	rs9273410-A	0.44	3E-21		1.13	[1.1-1.16]	Affymetrix [9886854] (imputed)	N
615	chr6_ssto_hap7	4056001	4056002	rs9273410	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in never smokers	8,631 European ancestry cases, 120,544 European ancestry controls	NA	6p21.32	NR	rs9273410-A	0.44	9E-16		1.15	[1.11-1.19]	Affymetrix [9886854] (imputed)	N
615	chr6_ssto_hap7	4056001	4056002	rs9273410	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in ever smokers	12,446 European ancestry cases, 59,145 European ancestry controls	NA	6p21.32	NR	rs9273410-A	0.44	3E-9		1.1	[1.06-1.13]	Affymetrix [9886854] (imputed)	N
615	chr6_ssto_hap7	4056001	4056002	rs9273410	30552067	Shrine N	2018-12-11	Lancet Respir Med	Moderate-to-severe asthma in individuals of European ancestry: a genome-wide association study.	Asthma (moderate or severe)	5,135 European ancestry cases, 25,675 European ancestry controls	5,414 European ancestry cases, 21,471 European ancestry controls	6p21.32	HLA-DQB1	rs9273410-A	0.5529999999999999	6E-32		1.21	[1.17-1.25]	Affymetrix [33771858] (imputed)	N
615	chr6_ssto_hap7	4056207	4056208	rs9273429	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQB1	rs9273429-G	NR	6E-9		0.0188118	[0.012-0.025] unit decrease	Affymetrix [319769] (imputed)	N
615	chr6_ssto_hap7	4056231	4056232	rs1064173	32534018	Liu X	2020-06-10	Brain Behav Immun	Genetic factors underlying the bidirectional relationship between autoimmune and mental disorders - findings from a Danish population-based study.	Autoimmune traits	1,383 Danish ancestry cases, 62,656 Danish ancestry controls	NA	6p21.32	NR	rs1064173-A	0.25	3E-36		1.8	[1.64-1.96]	NR [7721839] (imputed)	N
615	chr6_ssto_hap7	4056451	4056452	rs6689	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	6p21.32		rs6689-G	NR	1E-44		0.0349	[0.03-0.04] unit increase	Affymetrix, Illumina [20536134] (imputed)	N
615	chr6_ssto_hap7	4056451	4056452	rs6689	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	135,808 East Asian ancestry individuals	NA	6p21.32		rs6689-G	0.191232	2E-10		0.0291023	[0.02-0.038] unit increase	Illumina [13476599] (imputed)	N
615	chr6_ssto_hap7	4056451	4056452	rs6689	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	6p21.32	NR	rs6689-?	NR	7E-11				Affymetrix [~ 8270000] (imputed)	N
615	chr6_ssto_hap7	4056451	4056452	rs6689	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs6689-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
615	chr6_ssto_hap7	4056465	4056466	rs1063355	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	6p21.32	HLA-DQB1	rs1063355-T	0.397563657636028	4E-19		0.0709	[0.055-0.086] unit decrease	NR [5035015] (imputed)	N
615	chr6_ssto_hap7	4056465	4056466	rs1063355	24837172	Juyal G	2014-05-16	Gut	Genome-wide association scan in north Indians reveals three novel HLA-independent risk loci for ulcerative colitis.	Ulcerative colitis	603 North Indian ancestry cases, 622 North Indian ancestry controls	733 North Indian ancestry cases, 1,148 North Indian ancestry controls	6p21.32	HLA-DQB1, HLA-DRA, HLA-DQA1	rs1063355-A	NR	2E-6		1.43	[1.23-1.66]	Illumina [480391]	N
615	chr6_ssto_hap7	4056546	4056547	rs1766	33204752	Butler-Laporte G	2020-09-24	Open Forum Infect Dis	Genetic Determinants of Antibody-Mediated Immune Responses to Infectious Diseases Agents: A Genome-Wide and HLA Association Study.	Anti-varicella zoster virus IgG seropositivity	8,735 White British ancestry individuals	NA	6p21.32	HLA-DQB1	rs1766-A	0.53	1E-11		0.04	unit decrease	NR [25472218] (imputed)	N
615	chr6_ssto_hap7	4056584	4056585	rs1770	34212547	An J	2021-07-01	Allergy Asthma Immunol Res	Genome-Wide Association Study of Korean Asthmatics: A Comparison With UK Asthmatics.	Adult asthma	1,386 Korean ancestry cases, 5,205 Korean ancestry controls	NA	6p21.32		rs1770-G	0.17	5E-10		1.41	[1.27-1.58]	Affymetrix [4922160] (imputed)	N
615	chr6_ssto_hap7	4056584	4056585	rs1770	31152121	Zhu M	2019-05-31	Diabetes Care	Identification of Novel T1D Risk Loci and Their Association With Age and Islet Function at Diagnosis in Autoantibody-Positive T1D Individuals: Based on a Two-Stage Genome-Wide Association Study.	Type 1 diabetes	1,005 Han Chinese ancestry cases, 1,257 Han Chinese ancestry controls	1,378 Han Chinese ancestry cases, 3,774 Han Chinese ancestry controls	6p21.32	HLA-DQB1	rs1770-G	0.46	2E-232		4.28	[3.92-4.68]	Illumina [787224] (imputed)	N
615	chr6_ssto_hap7	4056675	4056676	rs1063348	29903748	Debiec H	2018-06-14	J Am Soc Nephrol	Transethnic, Genome-Wide Analysis Reveals Immune-Related Risk Alleles and Phenotypic Correlates in Pediatric Steroid-Sensitive Nephrotic Syndrome.	Childhood steroid-sensitive nephrotic syndrome	56 African cases, 454 African controls	NA	6p21.32	HLA-DQB1	rs1063348-?	0.48	3E-7		3.24	[1.93-5.45]	Illumina [at least 7529344] (imputed)	N
615	chr6_ssto_hap7	4056675	4056676	rs1063348	29903748	Debiec H	2018-06-14	J Am Soc Nephrol	Transethnic, Genome-Wide Analysis Reveals Immune-Related Risk Alleles and Phenotypic Correlates in Pediatric Steroid-Sensitive Nephrotic Syndrome.	Childhood steroid-sensitive nephrotic syndrome	244 European ancestry cases, 2,552 European ancestry controls, 56 African cases, 454 African controls, 85 Maghrebian cases, 261 Maghrebian controls	NA	6p21.32	HLA-DQB1	rs1063348-G	0.60	9E-23		3.33	[2.62-4.23]	Illumina [at least 7529344] (imputed)	N
615	chr6_ssto_hap7	4056675	4056676	rs1063348	29903748	Debiec H	2018-06-14	J Am Soc Nephrol	Transethnic, Genome-Wide Analysis Reveals Immune-Related Risk Alleles and Phenotypic Correlates in Pediatric Steroid-Sensitive Nephrotic Syndrome.	Childhood steroid-sensitive nephrotic syndrome	132 European ancestry cases, 2,000 European ancestry controls	NA	6p21.32	HLA-DQB1	rs1063348-?	0.61	1E-8		2.96	[2.04-4.29]	Illumina [at least 7529344] (imputed)	N
615	chr6_ssto_hap7	4056690	4056691	rs36205178	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Scarlet fever	6,812 European ancestry cases, 113,837 European ancestry controls	NA	6p21.32	HLA-DQB1	rs36205178-C	0.81	9E-14		1.24	[1.21-1.28]	Illumina [at least 560000] (imputed)	N
615	chr6_ssto_hap7	4056836	4056837	rs2854277	29899525	Klimentidis YC	2018-06-13	Int J Obes (Lond)	Genome-wide association study of habitual physical activity in over 377,000 UK Biobank participants identifies multiple variants including CADM2 and APOE.	Moderate to vigorous physical activity levels	377,234 European ancestry individuals	NA	6p21.32	HLA-DQB1	rs2854277-C	0.92	3E-10		0.032	unit increase	Affymetrix [11800000] (imputed)	N
615	chr6_ssto_hap7	4056891	4056892	rs9273484	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Agathobacter sp000434275 abundance in stool	5,959 Finnish ancestry individuals	NA	6p21.32		rs9273484-A	0.26703	4E-9		0.114715	[0.077-0.153] unit decrease	Illumina [7980478] (imputed)	N
615	chr6_ssto_hap7	4056901	4056902	rs9273487	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.32		rs9273487-A	0.824	4E-20				Affymetrix [10369434] (imputed)	N
615	chr6_ssto_hap7	4057095	4057096	rs9273500	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DQB1, HLA-DQB1-AS1, XXbac-BPG254F23.6	rs9273500-T	NR	2E-9		0.0229852	[0.015-0.031] unit increase	Affymetrix [323123] (imputed)	N
615	chr6_ssto_hap7	4057114	4057115	rs9273501	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs9273501-A	NR	9E-16		1.1098778	[1.08-1.14]	Affymetrix [7846216] (imputed)	N
615	chr6_ssto_hap7	4057181	4057182	rs2854275	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma and major depressive disorder	46,802 European ancestry asthma cases, 59,851 European ancestry major depressive disorder cases, 460,635 European ancestry controls	NA	6p21.32	HLA-DOB, HLA-DQA1, HLA-DQA2, HLA-DQB1, HLA-DQB2, TAP2	rs2854275-?	NR	3E-13				Affymetrix [up to 13554551] (imputed)	N
615	chr6_ssto_hap7	4057181	4057182	rs2854275	23326239	Rubicz R	2013-01-10	PLoS Genet	A genome-wide integrative genomic study localizes genetic factors influencing antibodies against Epstein-Barr virus nuclear antigen 1 (EBNA-1).	Epstein-Barr virus immune response (EBNA-1)	1,367 Mexican American indivduals	589 Mexican American indivduals	6p21.32	PSORS1C1, BAT2, EHMT2, HLA-DQB1, C6orf15, BAT4, NOTCH4, PRRT1, HLA-B	rs2854275-T	0.064	2E-10	(Conditional on rs477515 - Quantitative)	0.45	[NR] unit decrease	Illumina [944565]	N
615	chr6_ssto_hap7	4057291	4057293	rs201043192	26423011	Wain LV	2015-09-27	Lancet Respir Med	Novel insights into the genetics of smoking behaviour, lung function, and chronic obstructive pulmonary disease (UK BiLEVE): a genetic association study in UK Biobank.	Lung function (low FEV1 vs high FEV1)	19,493 European ancestry individuals with low FEV1 measurements, 9,808 European ancestry individuals with high FEV1 measurements	NA	6p21.32	HLA-DQB1	rs201043192-A	NR	5E-9		0.114	[0.077-0.151] unit increase	Affymetrix [28509962] (imputed)	N
615	chr6_ssto_hap7	4057413	4057414	rs28688207	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Sarcoidosis	1,718 European ancestry cases, 484,955 European ancestry controls, 220 East Asian ancestry cases, 177,667 East Asian ancestry controls	NA	6p21.32		rs28688207-C	NR	1E-15		0.7435	[0.56-0.93] unit increase	Affymetrix, Illumina [25845061] (imputed)	N
615	chr6_ssto_hap7	4057569	4057570	rs9273542	31263063	Dufek S	2019-07-01	J Am Soc Nephrol	Genetic Identification of Two Novel Loci Associated with Steroid-Sensitive Nephrotic Syndrome.	Childhood steroid-sensitive nephrotic syndrome	422 European ancestry cases, 5,642 European ancestry controls	NA	6p21.32	HLA-DQB1	rs9273542-T	0.24	2E-43		3.39	[2.86-4.03]	Illumina [5216266] (imputed)	N
615	chr6_ssto_hap7	4057661	4057662	rs3828785	27560520	Shaffer JR	2016-08-25	PLoS Genet	Genome-Wide Association Study Reveals Multiple Loci Influencing Normal Human Facial Morphology.	Eye morphology	2,447 European ancestry individuals	671 European ancestry individuals	6p21.32	Intergenic	rs3828785-A	0.03169	2E-7	(Outercanthal width)	1.449	[0.91-1.99] unit decrease	Illumina [34985077] (imputed)	N
615	chr6_ssto_hap7	4057669	4057670	rs28724235	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.32		rs28724235-T	0.934	1E-16				Affymetrix [10369434] (imputed)	N
615	chr6_ssto_hap7	4057670	4057671	rs9273552	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs9273552-A	0.07	2E-31	(Ubiquitin carboxyl-terminal hydrolase 25, USP25.9215.117.3)	0.62	[0.52-0.72] unit increase	Affymetrix [10572788] (imputed)	N
615	chr6_ssto_hap7	4057837	4057838	rs28724238	32488134	Auckland K	2020-06-02	Sci Rep	The Human Leukocyte Antigen Locus and Rheumatic Heart Disease Susceptibility in South Asians and Europeans.	Rheumatic heart disease	510 Northern Indian cases, 344 Northern Indian controls, 162 Fijian Indian cases, 147 Fijian Indian controls	150 European ancestry cases, 1,309 European ancestry controls	6p21.32	HLA-DQB1	rs28724238-?		2E-7		1.75	[1.42-2.15]	Illumina [6925553] (imputed)	N
615	chr6_ssto_hap7	4058103	4058104	rs28724242	32589924	Bi W	2020-06-23	Am J Hum Genet	A Fast and Accurate Method for Genome-Wide Time-to-Event Data Analysis and Its Application to UK Biobank.	Essential hypertension (time to event)	76,566 British ancestry cases, 206,305 British ancestry controls	NA	6p21.32	HLA-DQB142	rs28724242-?	NR	4E-8				NR [~ 24000000] (imputed)	N
615	chr6_ssto_hap7	4058636	4058637	rs1049130	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQB1, XXbac-BPG254F23.6	rs1049130-A	NR	1E-11		0.0190514	[0.014-0.025] unit increase	Affymetrix [321016] (imputed)	N
615	chr6_ssto_hap7	4058666	4058667	rs1049087	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hypothyroidism	1,114 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	6p21.32		rs1049087-A	0.609286629	4E-8		0.24121252	[0.16-0.33] unit increase	Illumina [13429045] (imputed)	N
615	chr6_ssto_hap7	4058666	4058667	rs1049087	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Lymphocytic leukemia	852 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs1049087-A	NR	7E-7		1.2743725	NR	Affymetrix [7846216] (imputed)	N
615	chr6_ssto_hap7	4058935	4058936	rs9274096	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.32		rs9274096-A	0.604	1E-14				Affymetrix [10369434] (imputed)	N
616	chr6_ssto_hap7	4065680	4065681	rs3828794	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6p21.32	NR	rs3828794-G	0.5206	1E-9		1.0380982	[1.03-1.05]	Affymetrix [15688218] (imputed)	N
616	chr6_ssto_hap7	4065726	4065727	rs2647025	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	6p21.32	NR	rs2647025-?	NR	4E-99	(conditional)			Affymetrix [15688218] (imputed)	N
616	chr6_ssto_hap7	4065775	4065776	rs9274623	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	6p21.32	NR	rs9274623-G	NR	6E-19		1.1363636	[NR]	Illumina [7158791] (imputed)	N
616	chr6_ssto_hap7	4065840	4065841	rs3828800	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DQB1	rs3828800-A	NR	1E-8		0.0236155	[0.016-0.032] unit decrease	Affymetrix [323123] (imputed)	N
616	chr6_ssto_hap7	4065897	4065898	rs3828805	34642315	Ferreiro-Iglesias A	2021-10-12	Nat Commun	Germline determinants of humoral immune response to HPV-16 protect against oropharyngeal cancer.	Oropharynx cancer and human papilloma virus 16 negative oropharyngeal cancer	2,359 European ancestry cases, 565 European ancestry controls	NA	6p21.32		rs3828805-C	NR	3E-9		1.2999		Illumina [up to 7574753] (imputed)	N
616	chr6_ssto_hap7	4065897	4065898	rs3828805	27749845	Lesseur C	2016-10-17	Nat Genet	Genome-wide association analyses identify new susceptibility loci for oral cavity and pharyngeal cancer.	Oropharynx cancer	2,506 European ancestry cases, 135 cases, 5,984 European ancestry controls, 601 controls	NA	6p21.32	HLA-DQB1	rs3828805-C	0.720208999141883	2E-12		1.3699		Illumina [7574753] (imputed)	N
616	chr6_ssto_hap7	4065897	4065898	rs3828805	27749845	Lesseur C	2016-10-17	Nat Genet	Genome-wide association analyses identify new susceptibility loci for oral cavity and pharyngeal cancer.	Oral cavity and pharyngeal cancer	2,717 European ancestry oral cavity cancer cases, 273 oral cavity cancer cases, 2,506 European ancestry oropharynx cancer cases, 135 oropharynx cancer cases, 305 European and unknown ancestry hypopharynx cancer cases, 73 European and unknown ancestry overlapping cases, 25 European and unknown ancestry cases, 5,984 European ancestry controls, 601 controls	NA	6p21.32	HLA-DQB1	rs3828805-C	0.72	3E-13		1.2759		Illumina [7574753] (imputed)	N
616	chr6_ssto_hap7	4066141	4066142	rs9274657	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.32	HLA-DQA1, HLA-DQB1, HLA-DRB1, HLA-DRB6	rs9274657-A		1E-8		1.07	[1.04-1.09]	Affymetrix, Illumina [NR]	N
616	chr6_ssto_hap7	4066153	4066154	rs2856698	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	6p21.32		rs2856698-G	NR	1E-158		0.2523	[0.23-0.27] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
616	chr6_ssto_hap7	4066153	4066154	rs2856698	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	6p21.32	HLA-DQB1	rs2856698-G	0.328285	3E-170		0.2688451	[0.25-0.29] unit increase	Affymetrix [7288503] (imputed)	N
616	chr6_ssto_hap7	4066162	4066163	rs9274659	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (age of onset)	37,846 British ancestry individuals	NA	6p21.32	NR	rs9274659-A	0.67	7E-18		1.249	[0.96-1.53] unit decrease	Affymetrix [10894596] (imputed)	N
616	chr6_ssto_hap7	4066272	4066273	rs9461792	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DQB1	rs9461792-A	NR	2E-14		0.0240826	[0.018-0.03] unit increase	Affymetrix [321169] (imputed)	N
616	chr6_ssto_hap7	4066295	4066296	rs9461793	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	6p21.32	NR	rs9461793-A	0.721618	2E-16		0.0108832	[0.0081-0.0136] unit increase	Affymetrix [16585854] (imputed)	N
616	chr6_ssto_hap7	4066295	4066296	rs9461793	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	6p21.32	NR	rs9461793-A	0.721618	3E-9		0.0092307	[0.0061-0.0124] unit increase	Affymetrix [16585866] (imputed)	N
616	chr6_ssto_hap7	4066417	4066418	rs17205409	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.32		rs17205409-T	0.71	8E-19				Affymetrix [10369434] (imputed)	N
616	chr6_ssto_hap7	4066423	4066424	rs9274678	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	6p21.32	HLA-DQB1	rs9274678-G	0.153747	3E-39		0.0256517	[0.02-0.031] unit increase	Affymetrix [93095623] (imputed)	N
616	chr6_ssto_hap7	4066476	4066477	rs28371206	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQB1	rs28371206-A	NR	4E-13		0.022406	[0.016-0.028] unit increase	Affymetrix [319769] (imputed)	N
616	chr6_ssto_hap7	4066476	4066477	rs28371206	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DQB1	rs28371206-A	NR	3E-13		0.0226484	[0.017-0.029] unit increase	Affymetrix [319769] (imputed)	N
616	chr6_ssto_hap7	4066508	4066509	rs184950714	32581322	Kakuta Y	2020-06-24	Sci Rep	An Integrated Genomic and Transcriptomic Analysis Reveals Candidates of Susceptibility Genes for Crohn's Disease in Japanese Populations.	Crohn's disease	713 Japanese ancestry cases, 2,063 Japanese ancestry controls	NA	6p21.32	HLA	rs184950714-?	NR	1E-17		1.16	[1.12-1.19]	NR [7424691] (imputed)	N
616	chr6_ssto_hap7	4066508	4066509	rs184950714	30500874	Kakuta Y	2018-11-29	J Crohns Colitis	A genome-wide association study identifying RAP1A as a novel susceptibility gene for Crohn's disease in Japanese individuals.	Crohn's disease	713 Japanese ancestry cases, 2,083 Japanese ancestry controls	770 Japanese ancestry cases, 852 Japanese ancestry controls	6p21.32	HLA-DQB1	rs184950714-?	0.156	4E-19		2.05	NR	NR [4335144] (imputed)	N
616	chr6_ssto_hap7	4066776	4066777	rs9274695	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQB1	rs9274695-T	NR	5E-9		0.0173565	[0.012-0.023] unit increase	Affymetrix [319769] (imputed)	N
616	chr6_ssto_hap7	4066776	4066777	rs9274695	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DQB1	rs9274695-T	NR	3E-8		0.0165442	[0.011-0.022] unit increase	Affymetrix [319769] (imputed)	N
616	chr6_ssto_hap7	4066776	4066777	rs9274695	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DQB1	rs9274695-T	NR	1E-11		0.021862	[0.016-0.028] unit decrease	Affymetrix [323123] (imputed)	N
616	chr6_ssto_hap7	4066937	4066938	rs17205528	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p21.32	NR	rs17205528-?	NR	3E-12		0.1232	[0.088-0.158] unit increase	Illumina [at least 560000] (imputed)	N
616	chr6_ssto_hap7	4066992	4066993	rs9274704	31719529	Lyons PA	2019-11-12	Nat Commun	Genome-wide association study of eosinophilic granulomatosis with polyangiitis reveals genomic loci stratified by ANCA status.	Eosinophilic granulomatosis with polyangiitis	534 European ancestry cases, 6,688 European ancestry controls	142 European and unknown ancestry cases, 121 European and unknown ancestry controls	6p21.32	HLA-DQ	rs9274704-?	NR	1E-20		0.7	NR unit increase	Affymetrix [9246221] (imputed)	N
616	chr6_ssto_hap7	4067188	4067189	rs17205640	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	150,708 East Asian ancestry individuals	NA	6p21.32	NR	rs17205640-T	0.456457	2E-22		0.047325	[0.038-0.057] SD units increase	Affymetrix, Illumina [16709798] (imputed)	N
616	chr6_ssto_hap7	4067188	4067189	rs17205640	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	149,861 East Asian ancestry individuals	NA	6p21.32	NR	rs17205640-T	0.456482	8E-17		0.040531	[0.031-0.05] SD units increase	Affymetrix, Illumina [16709126] (imputed)	N
616	chr6_ssto_hap7	4067188	4067189	rs17205640	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	142,940 East Asian ancestry individuals	NA	6p21.32	NR	rs17205640-T	0.455611	1E-14		0.038007	[0.028-0.048] SD units increase	Affymetrix, Illumina [16289021] (imputed)	N
616	chr6_ssto_hap7	4067245	4067246	rs9274719	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	81,042 East Asian ancestry individuals	NA	6p21.32	NR	rs9274719-T	0.330615	3E-10		0.040123	[0.028-0.053] SD units increase	Affymetrix, Illumina [16286709] (imputed)	N
616	chr6_ssto_hap7	4067247	4067248	rs17212014	31719529	Lyons PA	2019-11-12	Nat Commun	Genome-wide association study of eosinophilic granulomatosis with polyangiitis reveals genomic loci stratified by ANCA status.	Eosinophilic granulomatosis with polyangiitis (MPO-ANCA positive)	159 European ancestry cases, 6,688 European ancestry controls	43 European and unknown ancestry cases, 121 European and unknown ancestry controls	6p21.32	HLA-DQ	rs17212014-?	NR	1E-41		2.0	NR unit increase	Affymetrix [9246221] (imputed)	N
616	chr6_ssto_hap7	4067272	4067273	rs3997832	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQB1	rs3997832-C	NR	3E-15		0.022848	[0.017-0.029] unit increase	Affymetrix [319769] (imputed)	N
616	chr6_ssto_hap7	4067272	4067273	rs3997832	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DQB1	rs3997832-C	NR	5E-15		0.0226927	[0.017-0.028] unit increase	Affymetrix [319769] (imputed)	N
616	chr6_ssto_hap7	4067348	4067349	rs9274725	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DQB1	rs9274725-T	NR	8E-18		0.0244981	[0.019-0.03] unit increase	Affymetrix [321169] (imputed)	N
616	chr6_ssto_hap7	4067518	4067519	rs1694129	33768542	Liu Y	2021-03-26	Clin Pharmacol Ther	Class II HLA Variants Associate with Risk of Pegaspargase Hypersensitivity.	Asparaginase hypersensitivity in acute lymphoblastic leukemia	2,168 European ancestry individuals	NA	6p21.32	HLA-DQB1	rs1694129-T	NR	1E-8		2.03	[NR]	Illumina [NR] (imputed)	N
616	chr6_ssto_hap7	4067950	4067951	rs28746882	33143745	Andlauer TFM	2020-11-04	BMC Med	Treatment- and population-specific genetic risk factors for anti-drug antibodies against interferon-beta: a GWAS.	Binding antibody response to interferon beta therapy in multiple sclerosis (antibody levels; all treatment preparations)	up to 2,000 German and Swedish ancestry individuals	up to 757 German and Swedish ancestry individuals	6p21.32		rs28746882-A	0.08	5E-11	(conditional on rs9272071)	0.27678168	[0.19-0.36] unit increase	Illumina [8550834] (imputed)	N
616	chr6_ssto_hap7	4067974	4067975	rs11751495	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in IDL	115,082 European ancestry individuals	NA	6p21.32		rs11751495-C	0.972783	2E-10		0.082651	[0.057-0.108] unit decrease	NR [11722792] (imputed)	N
616	chr6_ssto_hap7	4067974	4067975	rs11751495	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	6p21.32	HLA-DQB1	rs11751495-G	0.027062	6E-16		0.05776946	[0.044-0.072] unit decrease	Affymetrix [93095623] (imputed)	N
616	chr6_ssto_hap7	4069903	4069904	rs9274845	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium HDL	115,082 European ancestry individuals	NA	6p21.32		rs9274845-C	0.579977	1E-11		0.0273653	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
616	chr6_ssto_hap7	4069903	4069904	rs9274845	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium HDL	115,082 European ancestry individuals	NA	6p21.32		rs9274845-C	0.579977	6E-13		0.0292315	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
616	chr6_ssto_hap7	4069903	4069904	rs9274845	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in HDL	115,082 European ancestry individuals	NA	6p21.32		rs9274845-C	0.579977	6E-9		0.0228022	[0.015-0.03] unit decrease	NR [11722792] (imputed)	N
616	chr6_ssto_hap7	4069903	4069904	rs9274845	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	6p21.32		rs9274845-C	0.579977	1E-8		0.022675	[0.015-0.03] unit decrease	NR [11722792] (imputed)	N
616	chr6_ssto_hap7	4069903	4069904	rs9274845	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein A1 levels	115,082 European ancestry individuals	NA	6p21.32		rs9274845-C	0.579977	1E-8		0.0226077	[0.015-0.03] unit decrease	NR [11722792] (imputed)	N
616	chr6_ssto_hap7	4069911	4069912	rs9274846	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium HDL particles	115,082 European ancestry individuals	NA	6p21.32		rs9274846-C	0.579991	3E-10		0.0251988	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
616	chr6_ssto_hap7	4069911	4069912	rs9274846	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium HDL	115,082 European ancestry individuals	NA	6p21.32		rs9274846-C	0.579991	9E-9		0.0230622	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
616	chr6_ssto_hap7	4069911	4069912	rs9274846	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	6p21.32		rs9274846-C	0.579991	7E-9		0.023128	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
616	chr6_ssto_hap7	4070918	4070919	rs9274890	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs9274890-A	0.257	2E-12	(Complement C4, C4A.C4B.4481.34.2)	0.22	[0.16-0.28] unit increase	Affymetrix [10572788] (imputed)	N
616	chr6_ssto_hap7	4070991	4070992	rs9274903	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs9274903-A	0.266	4E-14	(Complement C4, C4A.C4B.4481.34.2)	0.22	[0.16-0.28] unit increase	Affymetrix [10572788] (imputed)	N
616	chr6_ssto_hap7	4071648	4071649	rs9274954	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	HLA-DQB1	rs9274954-T	0.366	5E-13	(PAX-interacting protein 1, PAXIP1.12894.3.3)	0.22	[0.16-0.28] unit increase	Affymetrix [10572788] (imputed)	N
616	chr6_ssto_hap7	4072251	4072252	rs1794484	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lung cancer	4,444 East Asian ancestry cases, 174,282 East Asian ancestry controls	NA	6p21.32		rs1794484-C	0.340651021	5E-10		0.1469222	[0.1-0.19] unit increase	Illumina [13429980] (imputed)	N
616	chr6_ssto_hap7	4072525	4072526	rs1694123	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	HLA-DQB1	rs1694123-G	0.157	8E-13	(Zinc fingers and homeoboxes protein 3, ZHX3.10036.201.3)	0.27	[0.19-0.35] unit increase	Affymetrix [10572788] (imputed)	N
616	chr6_ssto_hap7	4075294	4075295	rs3134986	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	6p21.32	NA	rs3134986-T	0.2899	9E-9		0.002	[0.0014-0.0026] unit decrease	Affymetrix [15275733] (imputed)	N
616	chr6_ssto_hap7	4079630	4079631	rs9275052	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.32	NR	rs9275052-G	NR	1E-10		0.028	unit decrease	Affymetrix [at least 7091467] (imputed)	N
616	chr6_ssto_hap7	4079630	4079631	rs9275052	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.32	NR	rs9275052-G	0.404	5E-9	(EA)	0.027	unit decrease	Affymetrix [at least 7091467] (imputed)	N
616	chr6_ssto_hap7	4079630	4079631	rs9275052	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	6p21.32	NR	rs9275052-G	NR	2E-6		0.021	unit decrease	Affymetrix [at least 7091467] (imputed)	N
616	chr6_ssto_hap7	4080423	4080424	rs545072519	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	HLA-DQB1	rs545072519-C	NR	2E-9		0.0333434	[0.022-0.044] unit increase	Affymetrix [321114] (imputed)	N
616	chr6_ssto_hap7	4081142	4081143	rs1694112	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	6p21.32	NR	rs1694112-?	NR	8E-41	(conditional)			Affymetrix [15688218] (imputed)	N
616	chr6_ssto_hap7	4081154	4081155	rs9275109	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	HLA-DQB1	rs9275109-G	NR	2E-9		0.0176049	[0.012-0.023] unit decrease	Affymetrix [321114] (imputed)	N
616	chr6_ssto_hap7	4082094	4082095	rs9275134	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Cancer	56,634 White British ancestry cases, 218,196 White British ancestry controls	NA	6p21.32		rs9275134-?	NR	6E-6		0.964671	[0.95-0.98]	NR [688737]	N
616	chr6_ssto_hap7	4082243	4082244	rs17205731	33143745	Andlauer TFM	2020-11-04	BMC Med	Treatment- and population-specific genetic risk factors for anti-drug antibodies against interferon-beta: a GWAS.	Binding antibody response to interferon beta therapy in multiple sclerosis (antibody levels; IFN?-1b subcutaneous)	up to 2,000 German and Swedish ancestry individuals	up to 757 German and Swedish ancestry individuals	6p21.32		rs17205731-T	0.05	2E-11	(conditional on HLA-DRB1*04:01)	0.62026006	[0.44-0.8] unit increase	Illumina [8550834] (imputed)	N
616	chr6_ssto_hap7	4082561	4082562	rs17212146	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	6p21.32		rs17212146-A	0.01175	2E-14		0.08258159	[0.061-0.104] unit increase	Affymetrix [93095623] (imputed)	N
616	chr6_ssto_hap7	4082561	4082562	rs17212146	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6p21.32		rs17212146-A	0.01175	3E-25		0.11182327	[0.091-0.133] unit increase	Affymetrix [93095623] (imputed)	N
616	chr6_ssto_hap7	4083022	4083023	rs17212223	24204295	Han F	2013-10-31	PLoS Genet	Genome wide analysis of narcolepsy in China implicates novel immune loci and reveals changes in association prior to versus after the 2009 H1N1 influenza pandemic.	Narcolepsy (age of onset)	at least 1,000 Chinese ancestry cases	NA	6p21.32	NR	rs17212223-T	0.191	3E-8		1.95	year decrease	Affymetrix [603382]	N
616	chr6_ssto_hap7	4083678	4083679	rs9275152	31660654	Bandres-Ciga S	2019-10-29	Mov Disord	The Genetic Architecture of Parkinson Disease in Spain: Characterizing Population-Specific Risk, Differential Haplotype Structures, and Providing Etiologic Insight.	Parkinson's disease	4,639 Spanish ancestry cases, 2,949 Spanish ancestry controls	NA	6p21.32	HLA-DQB1	rs9275152-C	0.08263	2E-8		0.376551	[0.25-0.51] unit decrease	Illumina [9911207] (imputed)	N
616	chr6_ssto_hap7	4083760	4083761	rs3104361	33204752	Butler-Laporte G	2020-09-24	Open Forum Infect Dis	Genetic Determinants of Antibody-Mediated Immune Responses to Infectious Diseases Agents: A Genome-Wide and HLA Association Study.	Helicobacter pylori OMP antibody levels	2,640 White British ancestry individuals	NA	6p21.32	HLA-DQB1	rs3104361-T	0.418	7E-10		0.18	[0.12-0.24] unit decrease	NR [25472218] (imputed)	N
616	chr6_ssto_hap7	4083799	4083800	rs7755224	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	6p21.32	NR	rs7755224-?	NR	5E-138	(conditional)			Affymetrix [15688218] (imputed)	N
616	chr6_ssto_hap7	4083841	4083842	rs3021058	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Automobile speeding propensity	404,291 European ancestry individuals	NA	6p21.32	HLA-DQB1	rs3021058-A	0.5386	4E-8		0.012403218	[0.008-0.0168] unit increase	Affymetrix [11514463] (imputed)	N
616	chr6_ssto_hap7	4083951	4083952	rs3021176	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hepatic cancer	379 European ancestry cases, 475,259 European ancestry controls, 2,122 East Asian ancestry cases, 159,201 East Asian ancestry controls	NA	6p21.32		rs3021176-A	NR	2E-9		0.2342	[0.16-0.31] unit increase	Affymetrix, Illumina [25843189] (imputed)	N
616	chr6_ssto_hap7	4084102	4084103	rs9275160	34431594	Atkins JL	2021-08-25	Aging Cell	A genome-wide association study of the frailty index highlights brain pathways in ageing.	Frailty index	175,226 European ancestry individuals	NA	6p21.32	HLA-DQB1, HLA-DQA2	rs9275160-A	0.3397	7E-28		0.0382	[0.031-0.045] unit increase	Affymetrix, Illumina [7666890] (imputed)	N
616	chr6_ssto_hap7	4084102	4084103	rs9275160	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	6p21.32	NR	rs9275160-A	NR	9E-8		1.044	[1.03-1.06]	Affymetrix, Illumina [29235255] (imputed)	N
616	chr6_ssto_hap7	4084267	4084268	rs28746950	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs28746950-A	0.172	4E-13	(Ubiquitin carboxyl-terminal hydrolase 25, USP25.9215.117.3)	0.27	[0.19-0.35] unit increase	Affymetrix [10572788] (imputed)	N
616	chr6_ssto_hap7	4084429	4084430	rs115712830	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28- CD4-CD8- T cell Absolute Count	3,408 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs115712830-C	0.15817	5E-8		0.2914	[0.19-0.4] unit decrease	Illumina [18340221] (imputed)	N
616	chr6_ssto_hap7	4085449	4085450	rs9275171	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	2,495 East Asian ancestry cases, 4,283 East Asian ancestry controls	NA	6p21.32		rs9275171-G	NR	5E-29		0.446594	[0.37-0.52] unit increase	NR [5275424] (imputed)	N
616	chr6_ssto_hap7	4085653	4085654	rs9275177	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	IgA nephropathy	1,180 East Asian ancestry cases, 899 East Asian ancestry controls	NA			rs9275177-T	NR	2E-6		0.362916	[0.21-0.51] unit increase	Illumina [NR] (imputed)	N
616	chr6_ssto_hap7	4086192	4086193	rs9275184	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	6p21.32	NR	rs9275184-C	0.1106	6E-24		0.0981	[0.079-0.117] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
616	chr6_ssto_hap7	4086300	4086301	rs2856687	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	6p21.32	NR	rs2856687-C	0.588689	2E-12		0.0486468	[0.035-0.062] unit decrease	Affymetrix [17914406] (imputed)	N
616	chr6_ssto_hap7	4086455	4086456	rs28747027	32573827	Huang YH	2020-06-23	Aliment Pharmacol Ther	Large-scale genome-wide association study identifies HLA class II variants associated with chronic HBV infection: a study from Taiwan Biobank.	Chronic hepatitis B infection	1,810 East Asian cases, 9,002 East Asian seropositive controls	648 East Asian cases, 3,190 East Asian seropositive controls	6p21.32	NR	rs28747027-G	0.4639	7E-21		1.41	[1.32-1.52]	Affymetrix [583383]	N
616	chr6_ssto_hap7	4087025	4087026	rs13194877	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs13194877-A	0.2	6E-9		4.48	[3.41-5.89]	Illumina [NR] (imputed)	N
616	chr6_ssto_hap7	4087207	4087208	rs3129783	33143745	Andlauer TFM	2020-11-04	BMC Med	Treatment- and population-specific genetic risk factors for anti-drug antibodies against interferon-beta: a GWAS.	Binding antibody response to interferon beta therapy in multiple sclerosis (antibody levels; IFN?-1a subcutaneous and intramuscular)	up to 2,000 German and Swedish ancestry individuals	up to 757 German and Swedish ancestry individuals	6p21.32		rs3129783-G	0.44	4E-19		0.3	[-0.24--0.36] unit decrease	Illumina [8550834] (imputed)	N
616	chr6_ssto_hap7	4087390	4087391	rs189311301	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs189311301-C	0.991	3E-10		2.233	[1.98-2.48]	Illumina [11270530] (imputed)	N
616	chr6_ssto_hap7	4087540	4087540	rs201452941	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.32	HLA-DQB1, HLA-DQA2	rs201452941-?	0.611	7E-12	(women)	0.0399317	[0.029-0.051] unit decrease	Illumina [13520550] (imputed)	N
616	chr6_ssto_hap7	4088921	4088922	rs3129716	26316170	Demirci FY	2015-08-28	Arthritis Rheumatol	Identification of a New Susceptibility Locus for Systemic Lupus Erythematosus on Chromosome 12 in Individuals of European Ancestry.	Systemic lupus erythematosus	661 European ancestry cases, 487 European ancestry controls	4,467 European ancestry cases, 9,114 European ancestry controls	6p21.32	HLA-DQB1	rs3129716-?	NR	4E-9				Affymetrix [up to 700598]	N
616	chr6_ssto_hap7	4089028	4089029	rs4642516	30012571	Jia X	2018-07-16	J Am Soc Nephrol	Strong Association of the HLA-DR/DQ Locus with Childhood Steroid-Sensitive Nephrotic Syndrome in the Japanese Population.	Childhood steroid-sensitive nephrotic syndrome	224 Japanese ancestry cases, 412 Japanese ancestry controls	216 Japanese ancestry cases, 719 Japanese ancestry controls	6p21.32	HLA-DR, HLA-DQ	rs4642516-T	0.73	7E-13		3.030303	[2.44-3.85]	Affymetrix [4105543] (imputed)	N
616	chr6_ssto_hap7	4089063	4089064	rs7774434	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	8,021 European ancestry cases, 16,489 European ancestry controls, 2,495 East Asian ancestry cases, 4,283 East Asian ancestry controls	NA	6p21.32		rs7774434-C	NR	3E-116		0.462101	[0.42-0.5] unit increase	NR [2787054] (imputed)	N
616	chr6_ssto_hap7	4089063	4089064	rs7774434	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	8,021 European ancestry cases, 16,489 European ancestry controls	NA	6p21.32		rs7774434-C	NR	4E-104		0.470454	[0.43-0.51] unit increase	NR [5054572] (imputed)	N
616	chr6_ssto_hap7	4089063	4089064	rs7774434	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	MTCO3P1	rs7774434-C	NR	6E-9		0.0168538	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
616	chr6_ssto_hap7	4089063	4089064	rs7774434	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	MTCO3P1	rs7774434-C	NR	2E-8		0.0162768	[0.011-0.022] unit increase	Affymetrix [319769] (imputed)	N
616	chr6_ssto_hap7	4089063	4089064	rs7774434	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	MTCO3P1	rs7774434-C	NR	2E-10		0.0201596	[0.014-0.026] unit decrease	Affymetrix [323123] (imputed)	N
616	chr6_ssto_hap7	4089063	4089064	rs7774434	26394269	Cordell HJ	2015-09-22	Nat Commun	International genome-wide meta-analysis identifies new primary biliary cirrhosis risk loci and targetable pathogenic pathways.	Primary biliary cholangitis	2,764 European ancestry cases, 10,475 European ancestry controls	3,716 European ancestry cases,  4,261 European ancestry controls	6p21.32	MHC	rs7774434-C	0.47	2E-56		1.68	NR	Illumina [1143634] (imputed)	N
616	chr6_ssto_hap7	4089063	4089064	rs7774434	22961000	Liu JZ	2012-10-01	Nat Genet	Dense fine-mapping study identifies new susceptibility loci for primary biliary cirrhosis.	Primary biliary cirrhosis	2,861 British and Irish ancestry cases, 8,514 British and Irish ancestry controls	NA	6p21.32	HLA	rs7774434-C	0.38	1E-48		1.57		Illumina [237619] (imputed)	N
616	chr6_ssto_hap7	4089063	4089064	rs7774434	21399635	Mells GF	2011-03-13	Nat Genet	Genome-wide association study identifies 12 new susceptibility loci for primary biliary cirrhosis.	Primary biliary cholangitis	1,840 European ancestry cases, 5,163 European ancestry controls and (Liu et al)	620 European ancestry cases, 2,514 European ancestry controls	6p21.32	MHC	rs7774434-C	0.38	4E-34		1.6	[1.48-1.73]	Illumina [507467]	N
616	chr6_ssto_hap7	4089063	4089064	rs7774434	20639880	Liu X	2010-07-18	Nat Genet	Genome-wide meta-analyses identify three loci associated with primary biliary cirrhosis.	Primary biliary cholangitis	453 European ancestry cases, 945 European ancestry controls,	481 European ancestry cases, 3,706 European ancestry controls	6p21.32	HLA-DQB1	rs7774434-C	0.371	3E-26		1.75	[NR]	Illumina [276459]	N
616	chr6_ssto_hap7	4089305	4089306	rs9275210	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	MTCO3P1	rs9275210-T	NR	9E-9		0.0164099	[0.011-0.022] unit increase	Affymetrix [321114] (imputed)	N
616	chr6_ssto_hap7	4089404	4089405	rs7775055	23603761	Hinks A	2013-04-21	Nat Genet	Dense genotyping of immune-related disease regions identifies 14 new susceptibility loci for juvenile idiopathic arthritis.	Juvenile idiopathic arthritis (oligoarticular or rheumatoid factor-negative polyarticular)	2,816 European ancestry cases, 13,056 European ancestry controls	NA	6p21.32	HLA-DQA2, HLA-DQB1	rs7775055-G	0.02	3E-174	(dominant model)	6.01	[5.30-6.81]	Illumina [123003]	N
616	chr6_ssto_hap7	4089404	4089405	rs7775055	22936693	Juran BD	2012-08-29	Hum Mol Genet	Immunochip analyses identify a novel risk locus for primary biliary cirrhosis at 13q14, multiple independent associations at four established risk loci and epistasis between 1p31 and 7q32 risk variants.	Primary biliary cirrhosis	2,216 European ancestry cases, 5,594 Europen ancestry controls	NA	6p21.32	NR	rs7775055-C		1E-33		3.71	[3.00-4.59]	Illumina [109812]	N
616	chr6_ssto_hap7	4089567	4089568	rs7775228	33106546	Johnson TA	2020-10-26	J Hum Genet	Association of an IGHV3-66 gene variant with Kawasaki disease.	Kawasaki disease	1,276 East Asian ancestry cases, 5,086 East Asian ancestry controls	2,152 East Asian ancestry cases, 2,751 East Asian ancestry controls	6p21.32	HLA-DQB1	rs7775228-C	NR	7E-13		1.26	[1.19-1.35]	Affymetrix, Illumina [6265045] (imputed)	N
616	chr6_ssto_hap7	4089567	4089568	rs7775228	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.32	NR	rs7775228-?	NR	3E-6	(EA, C-C motif chemokine 19)			Affymetrix [509946]	N
616	chr6_ssto_hap7	4089567	4089568	rs7775228	25147954	Enroth S	2014-08-22	Nat Commun	Strong effects of genetic and lifestyle factors on biomarker variation and use of personalized cutoffs.	CCL19 levels	up to 653 individuals	up to 317 individuals	6p21.32	HLA-DQB1	rs7775228-C	0.16731	3E-13		0.51	[0.37-0.65] unit increase	Illumina [4840842] (imputed)	N
616	chr6_ssto_hap7	4089567	4089568	rs7775228	22036096	Ramasamy A	2011-11-01	J Allergy Clin Immunol	A genome-wide meta-analysis of genetic variants associated with allergic rhinitis and grass sensitization and their interaction with birth order.	IgE grass sensitization	2,315 European ancestry cases, 10,032 European ancestry controls	NA	6p21.32	HLA region	rs7775228-C	0.13	2E-9		1.33	[1.21-1.45]	Affymetrix, Illumina [2217510] (imputed)	N
616	chr6_ssto_hap7	4089567	4089568	rs7775228	21804548	Hirota T	2011-07-31	Nat Genet	Genome-wide association study identifies three new susceptibility loci for adult asthma in the Japanese population.	Asthma	1,532 Japanese ancestry cases, 3,304 Japanese ancestry controls	5,639 Japanese ancestry cases, 24,608 Japanese ancestry controls	6p21.32	HLA-DQB1	rs7775228-A	0.63	5E-15		1.17	[1.12-1.21]	Illumina [458847]	N
616	chr6_ssto_hap7	4089798	4089799	rs9469220	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	MTCO3P1	rs9469220-A	NR	5E-16		0.0228026	[0.017-0.028] unit increase	Affymetrix [319769] (imputed)	N
616	chr6_ssto_hap7	4089798	4089799	rs9469220	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	MTCO3P1	rs9469220-A	NR	9E-16		0.0226045	[0.017-0.028] unit increase	Affymetrix [319769] (imputed)	N
616	chr6_ssto_hap7	4089798	4089799	rs9469220	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	MTCO3P1	rs9469220-A	NR	5E-18		0.0246439	[0.019-0.03] unit increase	Affymetrix [321169] (imputed)	N
616	chr6_ssto_hap7	4089798	4089799	rs9469220	30230522	Zhang S	2018-09-19	Br J Dermatol	Subtype-Specific Inherited Predisposition to Pemphigus in Chinese Population.	Pemphigus vulgaris	255 Chinese ancestry cases, 501 Chinese ancestry controls	110 Chinese ancestry cases, 604 Chinese ancestry controls	6p21.32	NR	rs9469220-G	0.33	4E-19		3.36	NR	Affymetrix [416397]	N
616	chr6_ssto_hap7	4089798	4089799	rs9469220	30230522	Zhang S	2018-09-19	Br J Dermatol	Subtype-Specific Inherited Predisposition to Pemphigus in Chinese Population.	Pemphigus	350 Chinese ancestry cases, 501 Chinese ancestry controls	146 Chinese ancestry cases, 604 Chinese ancestry controls	6p21.32	NR	rs9469220-G	0.33	7E-22		3.2	NR	Affymetrix [416397]	N
616	chr6_ssto_hap7	4089798	4089799	rs9469220	23146381	Levin AM	2012-11-10	J Allergy Clin Immunol	A meta-analysis of genome-wide association studies for serum total IgE in diverse study populations.	IgE levels	2,469 African American individuals, 259 Latino individuals, 1,564 European ancestry individuals	2,961 African American individuals, 1,477 Latino individuals, 649 European ancestry individuals, 680 Hutterite individuals	6p21.32	HLA-DQB1	rs9469220-G	NR	2E-7		0.09	[0.05-0.12] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
616	chr6_ssto_hap7	4089798	4089799	rs9469220	17554300	Wellcome Trust Case Control Consortium	2007-06-07	Nature	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Crohn's disease	1,748 European ancestry cases, 2,938 European ancestry controls	(see Parkes 2007)	6p21.32	NR	rs9469220-A	0.48	2E-6		1.14	[0.98-1.32]	Affymetrix [469557]	N
616	chr6_ssto_hap7	4090181	4090182	rs34723256	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs34723256-A	0.059	4E-68	(conditional)	2.282	[2.19-2.37]	Illumina [11270530] (imputed)	N
616	chr6_ssto_hap7	4090201	4090202	rs2858330	31985003	Boocock J	2020-01-27	Hum Mol Genet	Genomic dissection of 43 serum urate-associated loci provides multiple insights into molecular mechanisms of urate control.	Urate levels	110,238 European ancestry individuals, 21,471 East Asian individuals	NA	6p21.32	HLA-DQB1	rs2858330-T		4E-8		0.027	[0.017-0.037] mg/dl increase	NR [NR] (imputed)	N
616	chr6_ssto_hap7	4090419	4090420	rs9275218	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	MTCO3P1	rs9275218-G	NR	1E-11		0.0205042	[0.015-0.026] unit increase	Affymetrix [321169] (imputed)	N
616	chr6_ssto_hap7	4090925	4090926	rs140068907	26891255	Jung ES	2016-02-18	Inflamm Bowel Dis	HLA-C*01 is a Risk Factor for Crohn's Disease.	Crohn's disease	275 Korean ancestry cases, 2,369 Korean ancestry controls	242 Korean ancestry cases, 1,066 Korean ancestry controls	6p21.32	HLA-DQB1, HLA-DQA2	rs140068907-C	0.08	1E-11		1.98	[1.62-2.41]	Affymetrix [3387207] (imputed)	N
616	chr6_ssto_hap7	4090998	4090999	rs9275222	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	MTCO3P1	rs9275222-T	NR	7E-11		0.0204278	[0.014-0.027] unit increase	Affymetrix [323858] (imputed)	N
616	chr6_ssto_hap7	4090998	4090999	rs9275222	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	MTCO3P1	rs9275222-T	NR	1E-9		0.0190432	[0.013-0.025] unit increase	Affymetrix [127266] (imputed)	N
616	chr6_ssto_hap7	4091127	4091128	rs2856674	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	MTCO3P1	rs2856674-G	NR	7E-14		0.0297899	[0.022-0.038] unit decrease	Affymetrix [321169] (imputed)	N
616	chr6_ssto_hap7	4091127	4091128	rs2856674	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling nervous	373,121 European ancestry individuals	NA	6p21.32	BRD2	rs2856674-A	0.144331	2E-10		6.41	z score increase	NR [10847151] (imputed)	N
616	chr6_ssto_hap7	4091127	4091128	rs2856674	23603763	Liu JZ	2013-06-01	Nat Genet	Dense genotyping of immune-related disease regions identifies nine new risk loci for primary sclerosing cholangitis.	Primary sclerosing cholangitis	3,789 European ancestry cases, 25,079 European ancestry controls	NA	6p21.32	HLA-DQA	rs2856674-?	NR	1E-6	(conditioned on rs4143332 + HLA-DQA*01:03 + rs532098 +rs1794282 + rs9263964)			Illumina [140322] (imputed)	N
616	chr6_ssto_hap7	4091320	4091321	rs3129718	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Hepatitis B	1,425 European ancestry cases, 218,180 European ancestry controls	NA	6p21.32	NR	rs3129718-?	NR	6E-6		0.3099	[0.17-0.45] unit decrease	Illumina [at least 560000] (imputed)	N
616	chr6_ssto_hap7	4091360	4091361	rs9275224	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	MTCO3P1	rs9275224-G	NR	1E-13		0.0208122	[0.015-0.026] unit increase	Affymetrix [319769] (imputed)	N
616	chr6_ssto_hap7	4091360	4091361	rs9275224	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	MTCO3P1	rs9275224-G	NR	1E-12		0.0199507	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
616	chr6_ssto_hap7	4091360	4091361	rs9275224	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	MTCO3P1	rs9275224-G	NR	5E-16		0.023055	[0.017-0.029] unit increase	Affymetrix [321169] (imputed)	N
616	chr6_ssto_hap7	4091360	4091361	rs9275224	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	6p21.32	HLA-DQB1, HLA-DQA1, HLA-DRB1	rs9275224-G	0.59	8E-14	(East Asian)	1.38		Illumina [> 1000000] (imputed)	N
616	chr6_ssto_hap7	4091360	4091361	rs9275224	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	6p21.32	HLA-DQB1, HLA-DQA1, HLA-DRB1	rs9275224-G	0.51	6E-30		1.36	[NR]	Illumina [> 1000000] (imputed)	N
616	chr6_ssto_hap7	4091360	4091361	rs9275224	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	6p21.32	HLA-DQB1, HLA-DQA1, HLA-DRB1	rs9275224-G	0.51	6E-18	(EA)	1.38	[NR]	Illumina [> 1000000] (imputed)	N
616	chr6_ssto_hap7	4091379	4091380	rs35472814	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs35472814-C	0.2	1E-8		4.23	[3.24-5.52]	Illumina [NR] (imputed)	N
616	chr6_ssto_hap7	4092064	4092065	rs2647006	30593799	Vergara C	2018-12-26	Gastroenterology	Multi-Ancestry Genome-Wide Association Study of Spontaneous Clearance of Hepatitis C Virus.	Hepatitis C (spontaneous viral clearance)	701 European ancestry cases, 1,035 European ancestry controls, 445 African American cases, 1,756 African American controls, 173 Hispanic ancestry cases, 313 Hispanic ancestry controls	NA	6p21.32	HLA-DQB1, HLA-DQA2	rs2647006-C	0.62	1E-21		1.79	NR (AA)	Illumina [15704341] (imputed)	N
616	chr6_ssto_hap7	4092199	4092200	rs9275239	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	MTCO3P1	rs9275239-A	NR	2E-20		0.0286392	[0.023-0.035] unit decrease	Affymetrix [323123] (imputed)	N
616	chr6_ssto_hap7	4092223	4092224	rs9275241	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs9275241-?	NR	2E-13				Affymetrix [~ 8270000] (imputed)	N
616	chr6_ssto_hap7	4092429	4092430	rs9275245	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (mother's age at death or mother's attained age)	up to 699,000 individuals	NA	6p21.32	NR	rs9275245-A		3E-6				Illumina [458525]	N
616	chr6_ssto_hap7	4092783	4092784	rs2858320	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	MTCO3P1	rs2858320-A	NR	9E-24		0.0285816	[0.023-0.034] unit decrease	Affymetrix [319769] (imputed)	N
616	chr6_ssto_hap7	4092783	4092784	rs2858320	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	MTCO3P1	rs2858320-A	NR	8E-23		0.0279496	[0.022-0.034] unit decrease	Affymetrix [319769] (imputed)	N
616	chr6_ssto_hap7	4092783	4092784	rs2858320	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	MTCO3P1	rs2858320-A	NR	9E-27		0.0308142	[0.025-0.036] unit decrease	Affymetrix [321169] (imputed)	N
616	chr6_ssto_hap7	4092783	4092784	rs2858320	33119750	Vergara C	2020-10-29	J Infect Dis	A multi-ancestry sex stratified genome-wide association study of spontaneous clearance of hepatitis C virus.	Hepatitis C (spontaneous viral clearance)	239 African ancestry male cases, 1,184 African ancestry male controls, 206 African ancestry female cases, 572 African ancestry female controls, 489 European ancestry male cases, 703 European ancestry male controls, 212 European ancestry female cases, 332 European ancestry female controls, 91 Hispanic male cases, 197 Hispanic male controls, 82 Hispanic female cases, 116 Hispanic female controls	NA	6p21.32	NR	rs2858320-G	0.58	2E-12	(female)	1.96	[NR]	Illumina [5730693] (imputed)	N
616	chr6_ssto_hap7	4093065	4093066	rs9275260	28698626	Lopez-Mejias R	2017-07-11	Sci Rep	A genome-wide association study suggests the HLA Class II region as the major susceptibility locus for IgA vasculitis.	Immunoglobulin A vasculitis	285 European ancestry cases, 1,006 European ancestry controls	NA	6p21.32	HLA-DQA1, HLA-DQB1	rs9275260-?		3E-9		1.7857143	[1.47-2.17]	Illumina [1909910] (imputed)	N
616	chr6_ssto_hap7	4094518	4094519	rs9275263	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic hepatitis C infection	273 European ancestry cases, 351,740 European ancestry controls, 7,110 East Asian ancestry cases, 169,588 East Asian ancestry controls	NA	6p21.32		rs9275263-G	NR	2E-12		0.1228	[0.088-0.157] unit decrease	Affymetrix, Illumina [20457788] (imputed)	N
616	chr6_ssto_hap7	4094599	4094600	rs9275267	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic hepatitis C infection	7,110 East Asian ancestry cases, 169,588 East Asian ancestry controls	NA	6p21.32		rs9275267-G	0.623579949	3E-12		0.1242382	[0.089-0.159] unit decrease	Illumina [13429570] (imputed)	N
616	chr6_ssto_hap7	4094707	4094708	rs9275271	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR++ monocyte Absolute Count	3,579 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs9275271-C	0.62317	2E-14		0.2356	[0.18-0.3] unit increase	Illumina [18377365] (imputed)	N
616	chr6_ssto_hap7	4094720	4094721	rs9275272	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Prostate cancer	10,792 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs9275272-C	NR	2E-7		1.0948106	NR	Affymetrix [7846216] (imputed)	N
616	chr6_ssto_hap7	4095102	4095103	rs9275281	28373541	Yang J	2017-04-03	Proc Natl Acad Sci U S A	Genetic signatures of high-altitude adaptation in Tibetans.	High altitude adaptation	3,008 Tibetan (founder/genetic isolate) individuals and 7,287 East Asian individuals	NA	6p21.32	HLA-DQB1	rs9275281-G	0.365	1E-10				Illumina [7300000] (imputed)	N
616	chr6_ssto_hap7	4095103	4095104	rs114169440	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs114169440-A	0.2	2E-8		4.08	[3.13-5.31]	Illumina [NR] (imputed)	N
616	chr6_ssto_hap7	4095156	4095157	rs9275282	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs9275282-?	NR	1E-14				Affymetrix [~ 8270000] (imputed)	N
616	chr6_ssto_hap7	4095340	4095341	rs113523948	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs113523948-C	0.063	3E-21	(conditional)	0.578	[0.46-0.69]	Illumina [11270530] (imputed)	N
616	chr6_ssto_hap7	4095439	4095440	rs112927854	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Low density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	6p21.32	HLA-DQB1, HLA-DQA2	rs112927854-?		4E-9		0.0728	[0.049-0.097] unit decrease	Illumina [31500000] (imputed)	N
616	chr6_ssto_hap7	4095469	4095470	rs9275292	27286809	Ligthart S	2016-06-10	BMC Genomics	Bivariate genome-wide association study identifies novel pleiotropic loci for lipids and inflammation.	C-reactive protein levels or LDL-cholesterol levels (pleiotropy)	65,000 individuals (C-reactive protein), 95,454 individuals (LDL-cholesterol)	NA	6p21.32	HLA-DQB1	rs9275292-A	NR	3E-8				NR [2501749] (imputed)	N
616	chr6_ssto_hap7	4095577	4095578	rs13205804	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	6p21.32	intergenic	rs13205804-A	0.8815	3E-21		0.0391	[0.031-0.047] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
616	chr6_ssto_hap7	4095811	4095812	rs3129720	23472185	Mero IL	2013-03-05	PLoS One	Oligoclonal band status in Scandinavian multiple sclerosis patients is associated with specific genetic risk alleles.	Multiple sclerosis (OCB status)	1,367 European ancestry OCB positive cases, 161 European ancestry OCB negative cases, 428 European ancestry controls	NA	6p21.32	HLA-DQB1	rs3129720-?	NR	5E-15	(OCB positive vs. controls)	1.91	[1.62-2.24]	Illumina [495970]	N
616	chr6_ssto_hap7	4095811	4095812	rs3129720	22493691	Eriksson N	2012-04-06	PLoS One	Novel associations for hypothyroidism include known autoimmune risk loci.	Hypothyroidism	3,736 European ancestry cases, 35,546 European ancestry controls	NA	6p21.32	HLA-DQA2, HLA-DQB1, HLA-DRB9, HLA-DRB5, HLA-DRB1, HLA-DQA1	rs3129720-C	0.764	5E-7		1.16	(1.10-1.23)	Illumina [870065]	N
616	chr6_ssto_hap7	4095944	4095945	rs17427445	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs17427445-A	0.2	1E-8		4.23	[3.24-5.52]	Illumina [NR] (imputed)	N
616	chr6_ssto_hap7	4096032	4096033	rs6457617	31050781	Zhao SX	2019-05-03	JAMA Netw Open	Assessment of Molecular Subtypes in Thyrotoxic Periodic Paralysis and Graves Disease Among Chinese Han Adults: A Population-Based Genome-Wide Association Study.	Thyrotoxic hypokalemic periodic paralysis and Graves disease	171 Han Chinese ancestry cases, 2,160 Han Chinese ancestry controls	362 Han Chinese ancestry cases, 1,089 Han Chinese ancestry controls	6p21.32	HLA-DQB1, HLA-DQA2	rs6457617-?	0.47	2E-17		1.74	[1.53-1.97]	Illumina [2752055] (imputed)	N
616	chr6_ssto_hap7	4096032	4096033	rs6457617	25616667	Goris A	2015-01-22	Brain	Genetic variants are major determinants of CSF antibody levels in multiple sclerosis.	Immunoglobulin G index levels in multiple sclerosis	773 European ancestry Individuals, 165 Individuals	2,072 Individuals	6p21.32	HLA-DQA1	rs6457617-A	NR	7E-17		0.127	[NR] unit decrease	NR [485236]	N
616	chr6_ssto_hap7	4096032	4096033	rs6457617	21841780	Chu X	2011-08-14	Nat Genet	A genome-wide association study identifies two new risk loci for Graves' disease.	Graves' disease	1,468 Chinese ancestry cases, 1,490 Chinese ancestry controls	3,994 Chinese ancestry cases, 3,510 Chinese ancestry controls	6p21.32	HLA, DRB1, DQA1, DQB1	rs6457617-T	0.45	7E-33		1.4	[1.32-1.48]	Illumina [486049]	N
616	chr6_ssto_hap7	4096032	4096033	rs6457617	21750679	Allanore Y	2011-07-07	PLoS Genet	Genome-wide scan identifies TNIP1, PSORS1C1, and RHOB as novel risk loci for systemic sclerosis.	Systemic sclerosis	564 European ancestry cases, 1,776 European ancestry controls	1,682 European ancestry cases, 3,926 European ancestry controls	6p21.32	HLA, DQB1	rs6457617-T	0.50	2E-37		1.61	[1.49-1.72]	Illumina [489814]	N
616	chr6_ssto_hap7	4096032	4096033	rs6457617	20383147	Radstake TR	2010-04-11	Nat Genet	Genome-wide association study of systemic sclerosis identifies CD247 as a new susceptibility locus.	Systemic sclerosis	2,296 European ancestry cases, 5,171 European ancestry controls	2,753 European ancestry cases, 4,569 European ancestry controls	6p21.32	HLA-DQB1	rs6457617-?	0.53	4E-17		1.37	[1.28-1.47]	Illumina [279621]	N
616	chr6_ssto_hap7	4096032	4096033	rs6457617	18668548	Julia A	2008-08-01	Arthritis Rheum	Genome-wide association study of rheumatoid arthritis in the Spanish population: KLF12 as a risk locus for rheumatoid arthritis susceptibility.	Rheumatoid arthritis	400 European ancestry cases, 400 European ancestry controls	410 European ancestry cases, 394 European ancestry controls	6p21.32	HLA-DQA2, HLA-DQA1	rs6457617-?	NR	1E-9				Illumina [299918]	N
616	chr6_ssto_hap7	4096032	4096033	rs6457617	17554300	Wellcome Trust Case Control Consortium	2007-06-07	Nature	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Rheumatoid arthritis	1,860 European ancestry cases, 2,938 European ancestry controls	NA	6p21.32	MHC	rs6457617-T	0.49	5E-75		2.36	[1.97-2.84]	Affymetrix [469557]	N
616	chr6_ssto_hap7	4096116	4096117	rs34677551	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs34677551-C	0.2	1E-8		4.23	[3.24-5.52]	Illumina [NR] (imputed)	N
616	chr6_ssto_hap7	4096134	4096135	rs34392107	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	6p21.32	HLA-DQB1	rs34392107-G	0.883508	6E-45		0.0459707	[0.04-0.052] unit decrease	Affymetrix [NR] (imputed)	N
616	chr6_ssto_hap7	4096179	4096180	rs6457620	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	6p21.32	HLA locus	rs6457620-C	0.51	2E-16		0.029	[NR] unit decrease	Affymetrix, Illumina [2834208] (imputed)	N
616	chr6_ssto_hap7	4096179	4096180	rs6457620	18794853	Raychaudhuri S	2008-09-14	Nat Genet	Common variants at CD40 and other loci confer risk of rheumatoid arthritis.	Rheumatoid arthritis	3,393 European ancestry cases, 12,460 European ancestry controls	3,929 European ancestry cases, 5,807 European ancestry controls	6p21.32	HLA-DRB1	rs6457620-?	0.50	4E-186		2.55	[2.40-2.71]	Affymetrix, Illumina [at least 315971] (imputed)	N
616	chr6_ssto_hap7	4096218	4096219	rs35900855	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs35900855-G	0.2	1E-8		4.23	[3.24-5.52]	Illumina [NR] (imputed)	N
616	chr6_ssto_hap7	4096512	4096513	rs7745040	29534301	Nishida N	2018-03-13	Hepatology	Key HLA-DRB1-DQB1 haplotypes and role of the BTNL2 gene for response to a hepatitis B vaccine.	Response to hepatitis B vaccine	107 Japanese ancestry low responder individuals, 351 Japanese ancestry intermediate responder individuals, 735 Japanese ancestry high responder individuals	NA	6p21.32	HLA-DQA2	rs7745040-?		2E-10		0.162	unit decrease	Affymetrix [427664]	N
616	chr6_ssto_hap7	4096638	4096639	rs2647012	33649182	Penova M	2021-03-01	Proc Natl Acad Sci U S A	Genome wide association study of HTLV-1-associated myelopathy/tropical spastic paraparesis in the Japanese population.	HTLV-1 associated myelopathy	731 Japanese ancestry cases, 846 Japanese ancestry controls	NA	6p21.32		rs2647012-T	0.17	5E-7		0.56	[0.45-0.7]	Illumina [126394]	N
616	chr6_ssto_hap7	4096638	4096639	rs2647012	24925725	Chung SA	2014-06-12	J Am Soc Nephrol	Lupus nephritis susceptibility loci in women with systemic lupus erythematosus.	Lupus nephritis in systemic lupus erythematosus	588 European ancestry cases, 1,412 European ancestry controls	NA	6p21.32	intergenic	rs2647012-?	NR	3E-7	(Additive)	1.52	[1.3-1.75]	Affymetrix, Illumina [1621689] (imputed)	N
616	chr6_ssto_hap7	4096638	4096639	rs2647012	21533074	Smedby KE	2011-04-21	PLoS Genet	GWAS of follicular lymphoma reveals allelic heterogeneity at 6p21.32 and suggests shared genetic susceptibility with diffuse large B-cell lymphoma.	Follicular lymphoma	379 European ancestry cases, 791 European ancestry controls	1,049 European ancestry cases, 3,952 European ancestry controls	6p21.32	HLA-DQB1	rs2647012-G	0.56	2E-21		1.56	[1.43-1.72]	Illumina [298168]	N
616	chr6_ssto_hap7	4096638	4096639	rs2647012	21408207	Chung SA	2011-03-03	PLoS Genet	Differential genetic associations for systemic lupus erythematosus based on anti-dsDNA autoantibody production.	Systemic lupus erythematosus	811 anti-dsDNA positive European ancestry cases, 906 anti-dsDNA negative European ancestry cases, 4,813 European ancestry controls	NA	6p21.32	HLA-DQA2, HLA-DQA1	rs2647012-A	0.44	8E-6	(case-only)	1.38	[1.20-1.59]	Illumina [421318] (imputed)	N
616	chr6_ssto_hap7	4096808	4096809	rs115255544	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs115255544-G	0.2	1E-8		4.23	[3.24-5.52]	Illumina [NR] (imputed)	N
616	chr6_ssto_hap7	4096971	4096972	rs116303320	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Total cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	6p21.32	HLA-DQB1, HLA-DQA2	rs116303320-?		5E-13		0.0603	[0.044-0.077] unit decrease	Illumina [31500000] (imputed)	N
616	chr6_ssto_hap7	4097060	4097061	rs2647003	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.32	NR	rs2647003-?	NR	3E-13				Affymetrix [~ 8270000] (imputed)	N
616	chr6_ssto_hap7	4097140	4097141	rs9357152	21896673	Chen D	2011-09-10	Hum Mol Genet	Genome-wide association study of HPV seropositivity.	HPV seropositivity	1,286 European ancestry lung cancer cases, 679 European ancestry head and neck cancer cases, 811 European ancestry kidney cancer cases, 2,035 European ancestry controls	1,307 Hispanic head and neck cancer cases, 1,037 Hispanic controls		HLA-DQB1	rs9357152-G	0.33	1E-14				Illumina [316015]	N
616	chr6_ssto_hap7	4097295	4097296	rs17206126	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	6p21.32		rs17206126-T	0.972723	3E-12		0.087804	[0.063-0.112] unit decrease	NR [11722792] (imputed)	N
616	chr6_ssto_hap7	4097305	4097306	rs17212462	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs17212462-T	0.2	1E-8		4.23	[3.24-5.52]	Illumina [NR] (imputed)	N
616	chr6_ssto_hap7	4097430	4097431	rs17212483	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs17212483-T	0.2	9E-9		4.27	[3.27-5.58]	Illumina [NR] (imputed)	N
616	chr6_ssto_hap7	4097600	4097601	rs10484561	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs10484561-G	0.2	2E-8		4.22	[3.22-5.52]	Illumina [NR] (imputed)	N
616	chr6_ssto_hap7	4097600	4097601	rs10484561	20639881	Conde L	2010-07-18	Nat Genet	Genome-wide association study of follicular lymphoma identifies a risk locus at 6p21.32.	Follicular lymphoma	681 European ancestry cases, 750 European ancestry controls	up to 3,164 European ancestry cases, 6,208 European ancestry controls	6p21.32	HLA-DQB1	rs10484561-G	0.11	1E-29	(FL)	1.95	[1.72-2.22]	Illumina [312768]	N
616	chr6_ssto_hap7	4097867	4097868	rs17212553	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs17212553-T	0.2	1E-8		4.23	[3.24-5.52]	Illumina [NR] (imputed)	N
616	chr6_ssto_hap7	4098476	4098477	rs9275319	23242368	Jiang DK	2012-12-16	Nat Genet	Genetic variants in STAT4 and HLA-DQ genes confer risk of hepatitis B virus-related hepatocellular carcinoma.	Hepatocellular carcinoma in hepatitis B infection	1,161 Chinese ancestry cases, 1,353 Chinese ancestry controls	4,319 Chinese ancestry cases, 4,966 Chinese ancestry controls	6p21.32	HLA-DQ	rs9275319-A	0.88	3E-17		1.49	[1.36-1.63]	Illumina [1672517] (imputed)	N
616	chr6_ssto_hap7	4098707	4098708	rs1794282	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.32	BTNL2, XXbac-BPG246D15.9, XXbac-BPG154L12.5, XXbac-BPG154L12.4, C6orf10, HNRNPA1P2, RNU6-603P, HLA-DRA, HLA-DRB9, HLA-DOB	rs1794282-T	0.08080808	3E-19	(EA, MHC class I polypeptide-related sequence B)	0.7066	[0.56-0.86] unit decrease	Affymetrix [509946]	N
616	chr6_ssto_hap7	4098841	4098842	rs9275326	28892059	Chang D	2017-09-11	Nat Genet	A meta-analysis of genome-wide association studies identifies 17 new Parkinson's disease risk loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	5,851 European ancestry cases, 5,866 European ancestry controls	6p21.32	HLA-DRB6, HLA-DQA1	rs9275326-C	0.895	1E-13		1.1764705	[1.12-1.22]	Illumina [11933700] (imputed)	N
616	chr6_ssto_hap7	4098841	4098842	rs9275326	25064009	Nalls MA	2014-07-27	Nat Genet	Large-scale meta-analysis of genome-wide association data identifies six new risk loci for Parkinson's disease.	Parkinson's disease	13,708 European ancestry cases, 95,282 European ancestry controls	5,353 European ancestry cases, 5,551 European ancestry controls	6p21.32	HLA-DQB	rs9275326-C	0.906	1E-12		1.21	[1.16-1.26]	Illumina [7893274] (imputed)	N
616	chr6_ssto_hap7	4099245	4099246	rs17427564	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs17427564-C	0.2	1E-8		4.23	[3.24-5.52]	Illumina [NR] (imputed)	N
616	chr6_ssto_hap7	4099285	4099286	rs9275334	26272072	Jiang X	2015-08-13	Rheumatology (Oxford)	An Immunochip-based interaction study of contrasting interaction effects with smoking in ACPA-positive versus ACPA-negative rheumatoid arthritis.	ACPA-positive rheumatoid arthritis (smoking interaction)	340 European ancestry never-smoker cases, 493 European ancestry ever-smoker cases, 746 European ancestry never-smoker controls, 994 European ancestry ever-smoker controls	187 European ancestry never-smoker cases, 421 European ancestry ever-smoker cases, 461 European ancestry never-smoker controls, 447 European ancestry ever-smoker controls	6p21.32	NR	rs9275334-?	NR	2E-6	(adjusted for HLA shared epitope)	1.724138	[1.22-2.94]	Illumina [133648] (imputed)	N
616	chr6_ssto_hap7	4099349	4099350	rs1794280	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hyperthyroidism	3,557 European ancestry cases, 456,942 European ancestry controls, 994 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	6p21.32		rs1794280-T	NR	2E-44		0.5463	[0.47-0.62] unit increase	Affymetrix, Illumina [25841580] (imputed)	N
616	chr6_ssto_hap7	4099349	4099350	rs1794280	30854688	Wang C	2019-03-10	Hepatology	Genome Wide Association Studies of Specific Antinuclear Autoantibody Sub-phenotypes in Primary Biliary Cholangitis.	Anti-sp100 seropositivity in primary biliary cholangitis	211 Han Chinese ancestry cases, 711 Han Chinese ancestry controls	234 Han Chinese ancestry cases, 1,018 Han Chinese ancestry controls	6p21.32	NR	rs1794280-T	0.181	6E-28		3.89	[3.05-4.96]	Illumina [794531]	N
616	chr6_ssto_hap7	4099542	4099543	rs17427599	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (anti-inflammatory and antirheumatic products, non-steroids)	29,694 East Asian ancestry cases, 149,032 East Asian ancestry controls	NA	6p21.32		rs17427599-T	0.278563857	1E-13		0.07483624	[0.055-0.095] unit increase	Illumina [13429980] (imputed)	N
616	chr6_ssto_hap7	4099651	4099652	rs1794514	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Autoimmune hepatitis	821 European ancestry cases, 484,413 European ancestry controls, 85 East Asian ancestry cases, 166,529 East Asian ancestry controls	NA	6p21.32		rs1794514-C	NR	6E-14		0.5013	[0.37-0.63] unit increase	Affymetrix, Illumina [25843756] (imputed)	N
616	chr6_ssto_hap7	4099684	4099685	rs188230545	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	124,341 East Asian ancestry individuals	NA	6p21.32		rs188230545-T	0.154874	1E-8		0.0301327	[0.02-0.04] unit increase	Illumina [13476323] (imputed)	N
616	chr6_ssto_hap7	4099698	4099699	rs3104394	32534018	Liu X	2020-06-10	Brain Behav Immun	Genetic factors underlying the bidirectional relationship between autoimmune and mental disorders - findings from a Danish population-based study.	Autoimmune traits	1,383 Danish ancestry cases, 62,656 Danish ancestry controls	NA	6p21.32	NR	rs3104394-G	0.16	3E-20		0.57	[0.50-0.65]	NR [7721839] (imputed)	N
616	chr6_ssto_hap7	4099771	4099772	rs2133037	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	IgG levels	15,536 Icelandic ancestry individuals	2,158 Swedish ancestry individuals	6p21.32	HLA-DQB1	rs2133037-A	0.0524	2E-14		0.19	NR SD units decrease	Illumina [21568490] (imputed)	N
616	chr6_ssto_hap7	4099838	4099839	rs9275349	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	Systemic lupus erythematosus	1,639 East Asian ancestry cases, 2,410 East Asian ancestry controls	NA			rs9275349-C	NR	5E-25		0.5726	[0.46-0.68] unit decrease	Illumina [NR] (imputed)	N
616	chr6_ssto_hap7	4099901	4099902	rs2856723	28921602	Lee MH	2017-09-16	Hepatology	Human leukocyte antigen variants and risk of hepatocellular carcinoma modified by hepatitis C virus genotypes: A genome-wide association study.	Hepatocellular carcinoma in hepatitis C infection	502 Chinese ancestry cases, 749 Chinese ancestry controls	669 Chinese ancestry cases, 429 Chinese ancestry controls	6p21.32	HLA-DQB1	rs2856723-?		3E-43		2.68	[2.32-3.09]	Affymetrix [576032]	N
616	chr6_ssto_hap7	4100034	4100035	rs9275358	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p21.32	HLA-DQB1	rs9275358-G	0.475	3E-7		0.083	[0.052-0.114] unit decrease	Affymetrix, Illumina [7374092] (imputed)	N
616	chr6_ssto_hap7	4100049	4100050	rs2647044	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	6p21.32	BRD2, BTNL2, C6orf10, HCG23, HLA-DMA, HLA-DMB, HLA-DOA, HLA-DOB, HLA-DPA1, HLA-DQA1, HLA-DQA2, HLA-DQB1, HLA-DQB2, HLA-DRA, HLA-DRB1, HLA-DRB5, HLA-DRB6, LOC100294145, NOTCH4, PSMB8, PSMB9, TAP1, TAP2, TAPSAR1	rs2647044-A	0.14736	4E-15		1.1522182	[1.12-1.19]	Affymetrix [8274727] (imputed)	N
616	chr6_ssto_hap7	4100049	4100050	rs2647044	21946350	Soler Artigas M	2011-09-25	Nat Genet	Genome-wide association and large-scale follow up identifies 16 new loci influencing lung function.	Pulmonary function	48,201 European ancestry individuals	46,411 European ancestry individuals	6p21.32	HLA-DQB1	rs2647044-G	NR	6E-6	(FEV1/FVC)	0.044	[0.024-0.064] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
616	chr6_ssto_hap7	4100049	4100050	rs2647044	17632545	Hakonarson H	2007-07-15	Nature	A genome-wide association study identifies KIAA0350 as a type 1 diabetes gene.	Type 1 diabetes	467 European ancestry trios, 561 European ancestry cases, 1,143 European ancestry controls	390 European ancestry trios, 1,333 European ancestry cases from 549 families	6p21.32	HLA-DRB1	rs2647044-A	0.13	1E-16		8.3	[6.97-9.89]	Illumina [543071]	N
616	chr6_ssto_hap7	4100104	4100105	rs36030018	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs36030018-C	0.109	3E-36	(conditional)	1.586	[1.51-1.66]	Illumina [11270530] (imputed)	N
616	chr6_ssto_hap7	4100171	4100172	rs2856721	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	6p21.32		rs2856721-C	0.467255784	1E-9		0.056245904	[0.038-0.074] unit decrease	Illumina [13429769] (imputed)	N
616	chr6_ssto_hap7	4100171	4100172	rs2856721	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	46,511 Asian ancestry cases, 169,776 Asian ancestry controls	NA	6p21.32	NR	rs2856721-C	0.4659	5E-10		0.0572	[0.039-0.075] unit decrease	Affymetrix, Illumina [1077427] (imputed)	N
616	chr6_ssto_hap7	4100241	4100242	rs2647045	23349640	Vijai J	2013-01-17	PLoS Genet	Susceptibility loci associated with specific and shared subtypes of lymphoid malignancies.	Lymphoma	275 Follicular non-Hodgkin's Lymphoma cases, 269 diffuse large B-cell non-Hodgkin's Lymphoma cases, 198 other non-Hodgkin's Lymphoma cases, 202 Hodgkin's Lymphoma cases, 4,044 controls	202 European ancestry Follicular non-Hodgkin's Lymphoma cases, 367 European ancestry diffuse large B-cell non-Hodgkin's Lymphoma cases, 577 European ancestry other non-Hodgkin's Lymphoma cases, 99 European ancestry Hodgkin's Lymphoma cases, 2,596 European ancestry controls	6p21.32	HLA-DQA2, HLA-DQB1	rs2647045-?	NR	4E-10	(FL)	1.69	[NR]	Affymetrix [530583]	N
616	chr6_ssto_hap7	4100464	4100465	rs2858310	27286809	Ligthart S	2016-06-10	BMC Genomics	Bivariate genome-wide association study identifies novel pleiotropic loci for lipids and inflammation.	C-reactive protein levels or total cholesterol levels (pleiotropy)	65,000 individuals (C-reactive protein), 100,184 individuals (total cholesterol)	NA	6p21.32	HLA-DQB1	rs2858310-A	NR	4E-12				NR [2501549] (imputed)	N
616	chr6_ssto_hap7	4100477	4100478	rs2647046	23349640	Vijai J	2013-01-17	PLoS Genet	Susceptibility loci associated with specific and shared subtypes of lymphoid malignancies.	Lymphoma	275 Follicular non-Hodgkin's Lymphoma cases, 269 diffuse large B-cell non-Hodgkin's Lymphoma cases, 198 other non-Hodgkin's Lymphoma cases, 202 Hodgkin's Lymphoma cases, 4,044 controls	202 European ancestry Follicular non-Hodgkin's Lymphoma cases, 367 European ancestry diffuse large B-cell non-Hodgkin's Lymphoma cases, 577 European ancestry other non-Hodgkin's Lymphoma cases, 99 European ancestry Hodgkin's Lymphoma cases, 2,596 European ancestry controls	6p21.32	HLA-DQA2, HLA-DQB1	rs2647046-?	NR	2E-6	(NHL)	1.25	[1.14-1.37]	Affymetrix [530583]	N
616	chr6_ssto_hap7	4100581	4100582	rs3135002	29404672	Roshandel D	2018-02-05	Diabetologia	Meta-genome-wide association studies identify a locus on chromosome 1 and multiple variants in the MHC region for serum C-peptide in type 1 diabetes.	Random C-peptide levels in type I diabetes	1,497 European ancestry individuals	NA	6p21.32	MHC	rs3135002-A	0.03	3E-8				Illumina [8320327] (imputed)	N
616	chr6_ssto_hap7	4100581	4100582	rs3135002	29404672	Roshandel D	2018-02-05	Diabetologia	Meta-genome-wide association studies identify a locus on chromosome 1 and multiple variants in the MHC region for serum C-peptide in type 1 diabetes.	C-peptide levels in type I diabetes	3,479 European ancestry individuals	NA	6p21.32	MHC	rs3135002-A	0.03	7E-8				Illumina [7988630] (imputed)	N
616	chr6_ssto_hap7	4101158	4101159	rs1612904	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of HDL particles	115,082 European ancestry individuals	NA	6p21.32		rs1612904-C	0.38135	1E-10		0.0256884	[0.018-0.033] unit decrease	NR [11722792] (imputed)	N
616	chr6_ssto_hap7	4101158	4101159	rs1612904	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Perceived unattractiveness to mosquitoes	16,576 European ancestry individuals	NA	6p21.32	intergenic	rs1612904-C	NR	1E-8		0.136111	[0.089-0.183] unit increase	Illumina [7433384] (imputed)	N
616	chr6_ssto_hap7	4101158	4101159	rs1612904	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.32	Intergenic	rs1612904-C	NR	1E-13		0.0245272	[0.018-0.031] unit increase	Illumina [13520550] (imputed)	N
616	chr6_ssto_hap7	4101296	4101297	rs9275390	21779181	Gorlova O	2011-07-14	PLoS Genet	Identification of novel genetic markers associated with clinical phenotypes of systemic sclerosis through a genome-wide association strategy.	Systemic sclerosis	2,296 European ancestry cases, 5,172 European ancestry controls	3,175 European ancestry cases, 4,210 European ancestry controls	6p21.32	HLA-DQB1	rs9275390-?	0.75	1E-7	(ATA positive)	1.61	[1.35-1.92]	Illumina [NR] (imputed)	N
616	chr6_ssto_hap7	4101296	4101297	rs9275390	21779181	Gorlova O	2011-07-14	PLoS Genet	Identification of novel genetic markers associated with clinical phenotypes of systemic sclerosis through a genome-wide association strategy.	Systemic sclerosis	2,296 European ancestry cases, 5,172 European ancestry controls	3,175 European ancestry cases, 4,210 European ancestry controls	6p21.32	HLA-DQB1	rs9275390-?	0.25	3E-54	(ACA positive)	2.38	[2.13-2.67]	Illumina [NR] (imputed)	N
616	chr6_ssto_hap7	4101509	4101510	rs11752643	31213470	Moon JY	2019-06-18	Diabetes Care	A Genome-Wide Association Study Identifies Blood Disorder-Related Variants Influencing Hemoglobin A1c With Implications for Glycemic Status in U.S. Hispanics/Latinos.	Glycated hemoglobin levels	9,636 Hispanic/Latino individuals	4,777 Hispanic/Latino individuals	6p21.32	HLA-DQA2	rs11752643-T	0.017	2E-6		0.096	[0.061-0.131] % increase	Illumina [11510031] (imputed)	N
616	chr6_ssto_hap7	4101509	4101510	rs11752643	21971053	Takeuchi F	2011-10-05	Eur J Hum Genet	Genome-wide association study of coronary artery disease in the Japanese.	Coronary heart disease	806 Japanese ancestry cases, 1,337 Japanese ancestry controls	3,593 Japanese ancestry cases, 6,335 Japanese ancestry controls	6p21.32	HLA, DRB-DQB	rs11752643-T	0.06	5E-7		1.26	[1.15-1.38]	Illumina [451382]	N
616	chr6_ssto_hap7	4101920	4101921	rs2647050	26030696	Cho MH	2015-06-01	Am J Respir Crit Care Med	A Genome-Wide Association Study of Emphysema and Airway Quantitative Imaging Phenotypes.	Emphysema imaging phenotypes	5,385 European ancestry chronic obstructive pulmonary disease cases, 901 African American chronic obstructive pulmonary disease cases, 3,613 European ancestry controls, 2,132 African American controls	NA	6p21.32	HLA-DQB1	rs2647050-T	NR	1E-6	(Perc15, All)	1.6	[0.66-2.54] unit increase	Illumina [7600000] (imputed)	N
616	chr6_ssto_hap7	4102109	4102110	rs9275406	23918589	Negi S	2013-12-01	Arthritis Rheum	A genome-wide association study reveals ARL15, a novel non-HLA susceptibility gene for rheumatoid arthritis in North Indians.	Rheumatoid arthritis	706 North Indian ancestry cases, 761 North Indian ancestry controls	927 North Indian ancestry cases, 1,148 North Indian ancestry controls	6p21.32	HLA-DQA2, HLA-DQB1, C6orf10, HLA-DQA1	rs9275406-T	0.17	3E-12		2.1	[1.72-2.68]	Illumina [559348]	N
616	chr6_ssto_hap7	4102290	4102291	rs3135001	32276964	Shete S	2020-04-10	Cancer Res	A genome-wide association study identifies two novel susceptible regions for squamous cell carcinoma of the head and neck.	Head and neck squamous cell carcinoma	2,171 European ancestry cases, 4,493 European ancestry controls	5,205 European ancestry cases, 3,232 European ancestry controls	6p21.32	HLA-DQB1	rs3135001-C	0.79	1E-16		1.2987013	[1.22-1.37]	Illumina [7858089] (imputed)	N
616	chr6_ssto_hap7	4102413	4102414	rs2856718	25802187	Jiang DK	2015-04-28	Hepatology	Genetic variants in five novel loci including CFB and CD40 predispose to chronic hepatitis B.	Chronic hepatitis B infection	2,514 Chinese ancestry cases, 1,130 Chinese ancestry controls	6,600 Chinese ancestry cases, 8,127 Chinese ancestry controls	6p21.32	HLA-DQB1	rs2856718-C	0.55	7E-28		1.28	[1.22-1.33]	Illumina [3680900] (imputed)	N
616	chr6_ssto_hap7	4102413	4102414	rs2856718	23760081	Kim YJ	2013-06-10	Hum Mol Genet	A genome-wide association study identified new variants associated with the risk of chronic hepatitis B.	Chronic hepatitis B infection	400 Korean ancestry cases, 1,000 Korean ancestry controls	971 Korean ancestry cases, 1,938 Korean ancestry controls	6p21.32	HLA-DQ	rs2856718-?	NR	2E-24		1.6	[1.46-1.75]	Illumina [719265]	N
616	chr6_ssto_hap7	4102413	4102414	rs2856718	21750111	Mbarek H	2011-07-12	Hum Mol Genet	A genome-wide association study of chronic hepatitis B identified novel risk locus in a Japanese population.	Hepatitis B	458 Japanese ancestry cases, 2,056 Japanese ancestry controls	2,209 Japanese ancestry cases, 4,440 Japanese ancestry controls	6p21.32	HLA-DQB1	rs2856718-A	0.48	4E-37		1.56	[1.45-1.67]	Illumina [423627]	N
616	chr6_ssto_hap7	4102466	4102467	rs2856717	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	6p21.32	HLA-DQB1, HLA-DQA1, HLA-DRB1	rs2856717-G	0.77	5E-10	(East Asian)	1.38	[NR]	Illumina [> 1000000] (imputed)	N
616	chr6_ssto_hap7	4102466	4102467	rs2856717	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	6p21.32	HLA-DQB1, HLA-DQA1, HLA-DRB1	rs2856717-G	0.62	5E-8	(EA)	1.21	[NR]	Illumina [> 1000000] (imputed)	N
616	chr6_ssto_hap7	4102466	4102467	rs2856717	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	6p21.32	HLA-DQB1, HLA-DQA1, HLA-DRB1	rs2856717-G	0.62	1E-15		1.27	[NR]	Illumina [> 1000000] (imputed)	N
616	chr6_ssto_hap7	4102991	4102992	rs34492195	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs34492195-A	0.2	1E-8		4.23	[3.24-5.52]	Illumina [NR] (imputed)	N
616	chr6_ssto_hap7	4103055	4103056	rs2647051	30593799	Vergara C	2018-12-26	Gastroenterology	Multi-Ancestry Genome-Wide Association Study of Spontaneous Clearance of Hepatitis C Virus.	Hepatitis C (spontaneous viral clearance)	701 European ancestry cases, 1,035 European ancestry controls	NA	6p21.32	HLA-DQB1, HLA-DQA2	rs2647051-C	0.64	1E-9		1.79	NR	Illumina [8968220] (imputed)	N
616	chr6_ssto_hap7	4103136	4103137	rs9275428	28706201	Wei WH	2017-07-13	Sci Rep	Genotypic variability based association identifies novel non-additive loci DHCR7 and IRF4 in sero-negative rheumatoid arthritis.	Sero-negative rheumatoid arthritis	3,323 European ancestry cases, 15,785 European ancestry controls	NA	6p21.32	HLA-DQB1	rs9275428-?	NR	2E-24				Illumina [107144]	N
616	chr6_ssto_hap7	4103261	4103262	rs13192471	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Non-melanoma skin cancer	5,912 European ancestry cases, 181,740 European ancestry controls		6p21.32	NR	rs13192471-T	NR	7E-8		1.1493434	[1.09-1.21]	Affymetrix [5734850] (imputed)	N
616	chr6_ssto_hap7	4103261	4103262	rs13192471	20453841	Kochi Y	2010-05-09	Nat Genet	A regulatory variant in CCR6 is associated with rheumatoid arthritis susceptibility.	Rheumatoid arthritis	2,303 Japanese ancestry cases, 3,380 Japanese ancestry controls	4,768 Japanese ancestry cases, 17,359 Japanese ancestry controls	6p21.32	HLA-DRB1	rs13192471-G	0.22	2E-58		1.97	[1.82-2.14]	Illumina [393217]	N
616	chr6_ssto_hap7	4103365	4103366	rs1794511	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	IgD on IgD+ CD24+ B cell	3,656 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs1794511-G	0.25863	7E-13		0.2439	[0.18-0.31] unit decrease	Illumina [18238197] (imputed)	N
616	chr6_ssto_hap7	4103406	4103407	rs1794275	22197929	Yu XQ	2011-12-25	Nat Genet	A genome-wide association study in Han Chinese identifies multiple susceptibility loci for IgA nephropathy.	IgA nephropathy	1,434 Han Chinese ancestry cases, 4,270 Han Chinese ancestry controls	2,703 Han Chinese ancestry cases, 3,464 Han Chinese ancestry controls	6p21.32	HLA-DQA/B	rs1794275-A	0.15	3E-13		1.3	[1.21-1.39]	Illumina [444882]	N
616	chr6_ssto_hap7	4104132	4104133	rs6907732	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on CD33dim HLA DR+ CD11b+	1,634 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs6907732-G	0.45576	3E-8		0.2461	[0.16-0.33] unit increase	Illumina [16998734] (imputed)	N
616	chr6_ssto_hap7	4104238	4104239	rs3134995	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	6p21.32	HLA-DQB1, HLA-DQA2	rs3134995-T	0.242	4E-26		0.0648904	[0.053-0.077] unit decrease	Illumina [13520550] (imputed)	N
616	chr6_ssto_hap7	4104790	4104791	rs9275477	34873335	van Rheenen W	2021-12-06	Nat Genet	Common and rare variant association analyses in amyotrophic lateral sclerosis identify 15 risk loci with distinct genetic architectures and neuron-specific biology.	Amyotrophic lateral sclerosis	27,205 European ancestry cases, 110,881 European ancestry controls, 2,407 East Asian ancestry cases, 11,775 East Asian ancestry controls	NA			rs9275477-C	NR	4E-12		0.142	[0.1-0.18] unit decrease	Illumina [10461755] (imputed)	N
616	chr6_ssto_hap7	4104790	4104791	rs9275477	34873335	van Rheenen W	2021-12-06	Nat Genet	Common and rare variant association analyses in amyotrophic lateral sclerosis identify 15 risk loci with distinct genetic architectures and neuron-specific biology.	Amyotrophic lateral sclerosis	27,205 European ancestry cases, 110,881 European ancestry controls	NA	6p21.32		rs9275477-C	0.096	6E-12		0.143	[0.1-0.18] unit decrease	Illumina [10461755] (imputed)	N
616	chr6_ssto_hap7	4105724	4105725	rs9275495	26272072	Jiang X	2015-08-13	Rheumatology (Oxford)	An Immunochip-based interaction study of contrasting interaction effects with smoking in ACPA-positive versus ACPA-negative rheumatoid arthritis.	ACPA-positive rheumatoid arthritis (smoking interaction)	340 European ancestry never-smoker cases, 493 European ancestry ever-smoker cases, 746 European ancestry never-smoker controls, 994 European ancestry ever-smoker controls	187 European ancestry never-smoker cases, 421 European ancestry ever-smoker cases, 461 European ancestry never-smoker controls, 447 European ancestry ever-smoker controls	6p21.32	NR	rs9275495-?	NR	2E-6	(adjusted for HLA shared epitope)	1.724138	[1.22-2.94]	Illumina [133648] (imputed)	N
616	chr6_ssto_hap7	4105875	4105876	rs9275497	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6p21.32	MTCO3P1	rs9275497-G	0.239038	1E-18		0.025688766	[0.02-0.031] unit increase	Affymetrix [93095623] (imputed)	N
616	chr6_ssto_hap7	4106375	4106376	rs35332745	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs35332745-C	0.2	2E-8		4.11	[3.16-5.35]	Illumina [NR] (imputed)	N
616	chr6_ssto_hap7	4106479	4106480	rs9275511	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Adult onset asthma or type 2 diabetes	33,418 European ancestry asthma cases, 393,186 European ancestry asthma controls, 159,208 European ancestry diabetes cases and controls	NA	6p21.32	NR	rs9275511-?	NR	4E-18				Affymetrix [up to 8270000] (imputed)	N
616	chr6_ssto_hap7	4106793	4106794	rs9275516	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs9275516-A	0.48	1E-8		0.18	[0.13-0.25]	Illumina [NR] (imputed)	N
616	chr6_ssto_hap7	4106875	4106876	rs17206287	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs17206287-A	0.858	2E-12		1.2	[1.15-1.25]	Illumina [11270530] (imputed)	N
616	chr6_ssto_hap7	4106887	4106888	rs1794265	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	NR	rs1794265-C	0.945894807901907	8E-6	(IGP1)	0.3014	[0.17-0.43] unit decrease	Illumina [~ 2500000] (imputed)	N
616	chr6_ssto_hap7	4106887	4106888	rs1794265	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	NR	rs1794265-C	0.945736455079007	1E-6	(IGP19)	0.3272	[0.2-0.46] unit decrease	Illumina [~ 2500000] (imputed)	N
616	chr6_ssto_hap7	4106887	4106888	rs1794265	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	NR	rs1794265-C	0.945425811930783	3E-7	(IGP41)	0.3448	[0.21-0.48] unit decrease	Illumina [~ 2500000] (imputed)	N
616	chr6_ssto_hap7	4107217	4107218	rs17206350	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	MTCO3P1	rs17206350-C	NR	9E-9		0.0179759	[0.012-0.024] unit increase	Affymetrix [323858] (imputed)	N
616	chr6_ssto_hap7	4107217	4107218	rs17206350	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	MTCO3P1	rs17206350-C	NR	4E-8		0.0171917	[0.011-0.023] unit increase	Affymetrix [127266] (imputed)	N
616	chr6_ssto_hap7	4107217	4107218	rs17206350	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	6p21.32	MTCO3P1	rs17206350-C	NR	2E-8		0.0159877	[0.01-0.022] unit increase	Affymetrix [321114] (imputed)	N
616	chr6_ssto_hap7	4107259	4107260	rs9275524	25608926	Betz RC	2015-01-22	Nat Commun	Genome-wide meta-analysis in alopecia areata resolves HLA associations and reveals two new susceptibility loci.	Alopecia areata	2,332 European ancestry cases and 5,233 European ancestry controls	764 European ancestry cases and 2,256 European ancestry controls	6p21.32	HLA-DQB1	rs9275524-C	NR	2E-60		1.92		Illumina [1233578] (imputed)	N
616	chr6_ssto_hap7	4107259	4107260	rs9275524	23453885	Smoller JW	2013-02-27	Lancet	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NA	6p21.32	intergenic	rs9275524-T		2E-7	(Modelling analysis)	1.07	[1.04-1.09]	NR [1252901] (imputed)	N
616	chr6_ssto_hap7	4107620	4107621	rs12525220	24782177	Jiang L	2014-05-01	Arthritis Rheumatol	Novel risk loci for rheumatoid arthritis in Han Chinese and congruence with risk variants in Europeans.	Rheumatoid arthritis	433 Han Chinese ancestry ACPA positive cases, 519 Han Chinese ancestry ACPA negative cases, 943 Han Chinese ancestry controls	1,032 Han Chinese ancestry ACPA positive cases, 1,100 Han Chinese ancestry ACPA negative cases, 2,553 Han Chinese ancestry controls	6p21.32	HLA-DQA2, MHC, HLA-DQB1	rs12525220-A	0.057	7E-14	(ACPA+ cases vs. all controls)	3.015	[NR]	Affymetrix [3441843] (imputed)	N
616	chr6_ssto_hap7	4107620	4107621	rs12525220	24782177	Jiang L	2014-05-01	Arthritis Rheumatol	Novel risk loci for rheumatoid arthritis in Han Chinese and congruence with risk variants in Europeans.	Rheumatoid arthritis	433 Han Chinese ancestry ACPA positive cases, 519 Han Chinese ancestry ACPA negative cases, 943 Han Chinese ancestry controls	1,032 Han Chinese ancestry ACPA positive cases, 1,100 Han Chinese ancestry ACPA negative cases, 2,553 Han Chinese ancestry controls	6p21.32	HLA-DQA2, MHC, HLA-DQB1	rs12525220-A	0.057	3E-12	(all cases vs. all controls)	2.608	[NR]	Affymetrix [3441843] (imputed)	N
616	chr6_ssto_hap7	4107620	4107621	rs12525220	24782177	Jiang L	2014-05-01	Arthritis Rheumatol	Novel risk loci for rheumatoid arthritis in Han Chinese and congruence with risk variants in Europeans.	Rheumatoid arthritis	433 Han Chinese ancestry ACPA positive cases, 519 Han Chinese ancestry ACPA negative cases, 943 Han Chinese ancestry controls	1,032 Han Chinese ancestry ACPA positive cases, 1,100 Han Chinese ancestry ACPA negative cases, 2,553 Han Chinese ancestry controls	6p21.32	HLA-DQA2, MHC, HLA-DQB1	rs12525220-A	0.057	2E-13	(ACPA- cases vs. all controls)	2.869	[NR]	Affymetrix [3441843] (imputed)	N
616	chr6_ssto_hap7	4107673	4107674	rs9275530	26272072	Jiang X	2015-08-13	Rheumatology (Oxford)	An Immunochip-based interaction study of contrasting interaction effects with smoking in ACPA-positive versus ACPA-negative rheumatoid arthritis.	ACPA-positive rheumatoid arthritis (smoking interaction)	340 European ancestry never-smoker cases, 493 European ancestry ever-smoker cases, 746 European ancestry never-smoker controls, 994 European ancestry ever-smoker controls	187 European ancestry never-smoker cases, 421 European ancestry ever-smoker cases, 461 European ancestry never-smoker controls, 447 European ancestry ever-smoker controls	6p21.32	NR	rs9275530-?	NR	2E-6	(adjusted for HLA shared epitope)	1.724138	[1.23-2.94]	Illumina [133648] (imputed)	N
616	chr6_ssto_hap7	4107784	4107785	rs9275532	26272072	Jiang X	2015-08-13	Rheumatology (Oxford)	An Immunochip-based interaction study of contrasting interaction effects with smoking in ACPA-positive versus ACPA-negative rheumatoid arthritis.	ACPA-positive rheumatoid arthritis (smoking interaction)	340 European ancestry never-smoker cases, 493 European ancestry ever-smoker cases, 746 European ancestry never-smoker controls, 994 European ancestry ever-smoker controls	187 European ancestry never-smoker cases, 421 European ancestry ever-smoker cases, 461 European ancestry never-smoker controls, 447 European ancestry ever-smoker controls	6p21.32	NR	rs9275532-?	NR	5E-6	(adjusted for HLA shared epitope)	1.754386	[1.23-3.12]	Illumina [133648] (imputed)	N
616	chr6_ssto_hap7	4108401	4108402	rs3129721	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	IgA nephropathy	1,180 East Asian ancestry cases, 899 East Asian ancestry controls	NA			rs3129721-A	NR	6E-10		0.530478	[0.36-0.7] unit increase	Illumina [NR] (imputed)	N
616	chr6_ssto_hap7	4108401	4108402	rs3129721	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA		NR	rs3129721-?	NR	7E-7		0.0367	[0.022-0.051] unit decrease	Illumina [at least 560000] (imputed)	N
616	chr6_ssto_hap7	4109106	4109107	rs17615220	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	6p21.32	MTCO3P1	rs17615220-G	0.055013	3E-10		0.035653602	[0.025-0.047] unit decrease	Affymetrix [93095623] (imputed)	N
616	chr6_ssto_hap7	4109484	4109485	rs4947344	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	MTCO3P1	rs4947344-T	NR	6E-9		0.0183059	[0.012-0.024] unit decrease	Affymetrix [319769] (imputed)	N
616	chr6_ssto_hap7	4109484	4109485	rs4947344	31375628	Tengvall K	2019-08-02	Proc Natl Acad Sci U S A	Molecular mimicry between Anoctamin 2 and Epstein-Barr virus nuclear antigen 1 associates with multiple sclerosis risk.	Anti-anoctamin 2 antibody levels	11,936 European ancestry individuals	NA	6p21.32	NR	rs4947344-A	NR	1E-9		0.056	[0.032-0.080] unit increase	Illumina [615763]	N
616	chr6_ssto_hap7	4109484	4109485	rs4947344	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p21.32	NR	rs4947344-?	NR	1E-24		0.2606	[0.21-0.31] unit decrease	Illumina [at least 560000] (imputed)	N
616	chr6_ssto_hap7	4109550	4109551	rs9275563	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	MTCO3P1	rs9275563-T	NR	4E-11		0.0202974	[0.014-0.026] unit decrease	Affymetrix [323123] (imputed)	N
616	chr6_ssto_hap7	4109550	4109551	rs9275563	23472185	Mero IL	2013-03-05	PLoS One	Oligoclonal band status in Scandinavian multiple sclerosis patients is associated with specific genetic risk alleles.	Multiple sclerosis (OCB status)	1,367 European ancestry OCB positive cases, 161 European ancestry OCB negative cases, 428 European ancestry controls	NA	6p21.32	HLA-DQA2	rs9275563-?	NR	6E-11	(OCB positive vs. controls)	1.75	[1.47-2.04]	Illumina [495970]	N
616	chr6_ssto_hap7	4109820	4109821	rs6932517	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs6932517-C	0.48	2E-8		0.19	[0.14-0.27]	Illumina [NR] (imputed)	N
616	chr6_ssto_hap7	4109837	4109838	rs9275570	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma and/or BMI	28,862 European ancestry cases, 422,048 European ancestry controls, 6,912 European ancestry individuals	NA	6p21.32	NR	rs9275570-G	NR	2E-19				Affymetrix [~ 8270000] (imputed)	N
616	chr6_ssto_hap7	4109837	4109838	rs9275570	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	6p21.32	NR	rs9275570-?	NR	3E-18				Affymetrix [~ 8270000] (imputed)	N
616	chr6_ssto_hap7	4110062	4110063	rs2894281	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	6p21.32	MTCO3P1	rs2894281-A	0.50383	7E-14		0.018175296	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
616	chr6_ssto_hap7	4110235	4110236	rs4273729	23420232	Duggal P	2013-02-19	Ann Intern Med	Genome-wide association study of spontaneous resolution of hepatitis C virus infection: data from multiple cohorts.	Chronic hepatitis C infection	1,482 chronic HCV cases, 919 spontaneously cleared HCV cases	461 chronic HCV cases, 284 spontaneously cleared HCV cases	6p21.32	HLA	rs4273729-?	NR	5E-17		1.59		Illumina [792721] (imputed)	N
616	chr6_ssto_hap7	4110637	4110638	rs9275572	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs9275572-A	0.48	8E-9		0.17	[0.12-0.24]	Illumina [NR] (imputed)	N
616	chr6_ssto_hap7	4110637	4110638	rs9275572	24871463	Armstrong DL	2014-05-29	Genes Immun	GWAS identifies novel SLE susceptibility genes and explains the association of the HLA region.	Systemic lupus erythematosus	725 European ancestry cases, 2,438 European ancestry controls	NA	6p21.32	HLA-DQA2	rs9275572-A	0.4	5E-16		1.74	[1.64-1.85]	Illumina [NR]	N
616	chr6_ssto_hap7	4110637	4110638	rs9275572	24376798	Miki D	2013-12-20	PLoS One	HLA-DQB1*03 confers susceptibility to chronic hepatitis C in Japanese: a genome-wide association study.	Chronic hepatitis C infection	481 Japanese ancestry cases, 2,963 Japanese ancestry controls	5,737 Japanese ancestry cases, 26,931 Japanese ancestry controls	6p21.32	HLA-DQB1, HLA-DQA1	rs9275572-T	0.359	4E-16		1.27	[1.19-1.33]	Illumina [458207]	N
616	chr6_ssto_hap7	4110637	4110638	rs9275572	21499248	Kumar V	2011-04-17	Nat Genet	Genome-wide association study identifies a susceptibility locus for HCV-induced hepatocellular carcinoma.	Hepatocellular carcinoma	721 Japanese ancestry cases, 2,890 Japanese ancestry controls	673 Japanese ancestry cases, 2,596 Japanese ancestry controls	6p21.32	HLA-DQ, HLA-DR	rs9275572-A	0.36	6E-9		1.3	[1.19-1.42]	Illumina [432703]	N
616	chr6_ssto_hap7	4110637	4110638	rs9275572	20596022	Petukhova L	2010-07-01	Nature	Genome-wide association study in alopecia areata implicates both innate and adaptive immunity.	Alopecia areata	Up to 1,054 European ancestry cases, 3,278 European ancestry controls	NA	6p21.32	HLA-DQA2	rs9275572-G	0.59	1E-35		2.21	[1.98-2.47]	Illumina [463301]	N
616	chr6_ssto_hap7	4110964	4110965	rs9275576	31837886	Kennedy OJ	2019-12-02	Am J Kidney Dis	Coffee Consumption and Kidney Function: A Mendelian Randomization Study.	Coffee consumption (cups per day)	227,666 British ancestry individuals	NA	6p21.32	HLA-DQA2	rs9275576-T	0.146	6E-9		0.048	NR cups per day increase	NR [NR]	N
616	chr6_ssto_hap7	4111022	4111023	rs9275578	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs9275578-T	0.31	1E-9		4.62	[3.51-6.10]	Illumina [NR] (imputed)	N
616	chr6_ssto_hap7	4111097	4111098	rs9275579	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	MTCO3P1	rs9275579-A	NR	2E-11		0.0245816	[0.017-0.032] unit decrease	Affymetrix [323123] (imputed)	N
616	chr6_ssto_hap7	4111100	4111101	rs9275580	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs9275580-G	0.33	3E-8		3.96	[3.03-5.19]	Illumina [NR] (imputed)	N
616	chr6_ssto_hap7	4111710	4111711	rs9275582	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs9275582-T	0.31	1E-9		4.54	[3.45-5.98]	Illumina [NR] (imputed)	N
616	chr6_ssto_hap7	4111710	4111711	rs9275582	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (non-Lofgren's syndrome without extrapulmonary manifestations)	451 Swedish ancestry cases, 2,086 Swedish ancestry controls	NA	6p21.32	HLA-DQB1, HLA-DQA2, HLA-DQA1	rs9275582-G	0.83	2E-11		1.8705574	[1.57-2.24]	Illumina [118177]	N
616	chr6_ssto_hap7	4111762	4111763	rs3135461	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs3135461-A	0.841	2E-39		0.726	[0.68-0.77]	Illumina [11270530] (imputed)	N
616	chr6_ssto_hap7	4111762	4111763	rs3135461	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.32		rs3135461-A	0.773542	8E-36		1.0648913	[1.05-1.08]	Affymetrix, Illumina [9851866] (imputed)	N
616	chr6_ssto_hap7	4112023	4112024	rs9275587	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	XXbac-BPG254F23.7	rs9275587-C	NR	5E-9		0.0184889	[0.012-0.025] unit increase	Affymetrix [323858] (imputed)	N
616	chr6_ssto_hap7	4112023	4112024	rs9275587	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	XXbac-BPG254F23.7	rs9275587-C	NR	2E-8		0.0178049	[0.012-0.024] unit increase	Affymetrix [127266] (imputed)	N
616	chr6_ssto_hap7	4112220	4112221	rs7764819	23284291	Hancock DB	2012-12-20	PLoS Genet	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (smoking interaction)	50,047 European ancestry individuals	NA	6p21.32	HLA-DQA2, HLA-DQB1	rs7764819-T	0.89	4E-9	(FEV1/FVC, Pack-years)	1.0E-4	[-0.00014-0.00025] unit decrease	NR [~ 2500000] (imputed)	N
616	chr6_ssto_hap7	4112220	4112221	rs7764819	23284291	Hancock DB	2012-12-20	PLoS Genet	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (smoking interaction)	50,047 European ancestry individuals	NA	6p21.32	HLA-DQA2, HLA-DQB1	rs7764819-T	0.89	4E-9	(FEV1/FVC, Ever-smoking)	0.001	[-0.04016-0.04216] unit decrease	NR [~ 2500000] (imputed)	N
616	chr6_ssto_hap7	4112264	4112265	rs9275592	28041642	Carmona FD	2016-12-29	Am J Hum Genet	A Genome-wide Association Study Identifies Risk Alleles in Plasminogen and P4HA2 Associated with Giant Cell Arteritis.	Giant cell arteritis	2,134 European ancestry cases, 9,125 European ancestry controls	NA	6p21.32	HLA-DQA1, HLA-DQA2	rs9275592-?	0.11	1E-40		2.08	[1.87-2.32]	Illumina [1844133] (imputed)	N
616	chr6_ssto_hap7	4112572	4112573	rs7765379	25383971	Dunstan SJ	2014-11-10	Nat Genet	Variation at HLA-DRB1 is associated with resistance to enteric fever.	Enteric fever	432 Vietnamese ancestry cases, 2,011 Vietnamese ancestry controls	151 Vietnamese ancestry cases,  668 Vietnamese ancestry controls, 595 Nepalese ancestry cases, 386 Nepalese ancestry controls	6p21.32	HLA-DRB1, HLA-DQB1	rs7765379-A	0.945	2E-13		4.55	[2.94-6.67]	Illumina [709725]	N
616	chr6_ssto_hap7	4112572	4112573	rs7765379	23266558	Yamazaki K	2012-12-21	Gastroenterology	A genome-wide association study identifies 2 susceptibility Loci for Crohn's disease in a Japanese population.	Crohn's disease	372 Japanese ancestry cases,3,389 Japanese ancestry controls	Up to 1,151 Japanese ancestry cases, up to 15,800 Japanese ancestry controls	6p21.32	HLA-DQA2, HLA-DOB, HLA-DQB1, PSMB9, HLA-DRB1, HLA-DQA1	rs7765379-G	NR	9E-59		1.93	[1.78-2.09]	Illumina [4929034] (imputed)	N
616	chr6_ssto_hap7	4112572	4112573	rs7765379	21452313	Freudenberg J	2011-04-01	Arthritis Rheum	Genome-wide association study of rheumatoid arthritis in Koreans: population-specific loci as well as overlap with European susceptibility loci.	Rheumatoid arthritis	801 Korean ancestry cases, 757 Korean ancestry controls	718 Korean ancestry cases, 719 Korean ancestry controls	6p21.32	HLA-DRB1	rs7765379-?		5E-23		2.51	[NR]	Illumina [441398]	N
616	chr6_ssto_hap7	4112805	4112806	rs2858332	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	XXbac-BPG254F23.7	rs2858332-T	NR	7E-18		0.0263625	[0.02-0.032] unit decrease	Affymetrix [323123] (imputed)	N
616	chr6_ssto_hap7	4112805	4112806	rs2858332	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	6p21.32	HLA-DQA2	rs2858332-T	0.50665382076412	7E-7	(G_Clostridium_sensu_stricto_RNT)	0.129415	[0.078-0.181] unit decrease	Illumina [7711310] (imputed)	N
616	chr6_ssto_hap7	4112921	4112922	rs2858331	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs2858331-G	0.33	4E-8		3.82	[2.93-4.97]	Illumina [NR] (imputed)	N
616	chr6_ssto_hap7	4112921	4112922	rs2858331	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Non-Hodgkin's lymphoma	2,400 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs2858331-G	NR	3E-7		1.1625204	NR	Affymetrix [7846216] (imputed)	N
616	chr6_ssto_hap7	4112921	4112922	rs2858331	23146381	Levin AM	2012-11-10	J Allergy Clin Immunol	A meta-analysis of genome-wide association studies for serum total IgE in diverse study populations.	IgE levels	2,469 African American individuals, 259 Latino individuals, 1,564 European ancestry individuals	2,961 African American individuals, 1,477 Latino individuals, 649 European ancestry individuals, 680 Hutterite individuals	6p21.32	HLA-DQA2	rs2858331-G	NR	6E-6				Affymetrix, Illumina [NR] (imputed)	N
616	chr6_ssto_hap7	4112921	4112922	rs2858331	22075330	Granada M	2011-11-08	J Allergy Clin Immunol	A genome-wide association study of plasma total IgE concentrations in the Framingham Heart Study.	IgE levels	6,819 European ancestry individuals	7,809 European ancestry indivduals	6p21.32	HLA-DQA2	rs2858331-G	NR	1E-8		0.04	[NR] unit decrease	Affymetrix [2540223] (imputed)	N
616	chr6_ssto_hap7	4112999	4113000	rs9275595	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	6p21.32	HLA-DQA2	rs9275595-T	0.763	6E-6		0.016	[0.0089-0.0227] kg/m2 increase	Affymetrix, Illumina [2550021]	N
616	chr6_ssto_hap7	4112999	4113000	rs9275595	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	6p21.32	HLA-DQA2	rs9275595-T	0.76	9E-6	(EA)	0.016	[0.009-0.0232] kg/m2 increase	Affymetrix, Illumina [2550021]	N
616	chr6_ssto_hap7	4113127	4113128	rs7454108	29857070	Gao J	2018-05-29	J Invest Dermatol	Association study and fine-mapping major histocompatibility complex analysis of pemphigus vulgaris in a Han Chinese population.	Pemphigus vulgaris	240 Han Chinese ancestry cases, 1,031 Han Chinese ancestry controls	252 Han Chinese ancestry cases, 1,852 Han Chinese ancestry controls	6p21.32	NR	rs7454108-?	NR	3E-12	(conditioned on HLA-DRB1*14:04)	3.25	[NR]	Illumina [802980]	N
616	chr6_ssto_hap7	4113127	4113128	rs7454108	28029757	Merkel PA	2016-12-28	Arthritis Rheumatol	Identification of Functional and Expression Polymorphisms Associated With Risk for Antineutrophil Cytoplasmic Autoantibody-Associated Vasculitis.	Vasculitis associated with antineutrophil cytoplasmic antibody reactive to myeloperoxidase	324 European ancestry cases and 3258 European ancestry controls.	54 European ancestry cases and 1465 European ancestry controls.	6p21.32	HLA-DQA2	rs7454108-C	0.10	5E-25		2.73	2.25-3.24	Affymetrix [at least 333035] (imputed)	N
616	chr6_ssto_hap7	4113127	4113128	rs7454108	26272072	Jiang X	2015-08-13	Rheumatology (Oxford)	An Immunochip-based interaction study of contrasting interaction effects with smoking in ACPA-positive versus ACPA-negative rheumatoid arthritis.	ACPA-positive rheumatoid arthritis (smoking interaction)	340 European ancestry never-smoker cases, 493 European ancestry ever-smoker cases, 746 European ancestry never-smoker controls, 994 European ancestry ever-smoker controls	187 European ancestry never-smoker cases, 421 European ancestry ever-smoker cases, 461 European ancestry never-smoker controls, 447 European ancestry ever-smoker controls	6p21.32	NR	rs7454108-?	NR	2E-6	(adjusted for HLA shared epitope)	1.724138	[1.22-2.94]	Illumina [133648] (imputed)	N
616	chr6_ssto_hap7	4113174	4113175	rs3957146	26272072	Jiang X	2015-08-13	Rheumatology (Oxford)	An Immunochip-based interaction study of contrasting interaction effects with smoking in ACPA-positive versus ACPA-negative rheumatoid arthritis.	ACPA-positive rheumatoid arthritis (smoking interaction)	340 European ancestry never-smoker cases, 493 European ancestry ever-smoker cases, 746 European ancestry never-smoker controls, 994 European ancestry ever-smoker controls	187 European ancestry never-smoker cases, 421 European ancestry ever-smoker cases, 461 European ancestry never-smoker controls, 447 European ancestry ever-smoker controls	6p21.32	NR	rs3957146-?	NR	1E-6	(adjusted for HLA shared epitope)	1.724138	[1.22-2.86]	Illumina [133648] (imputed)	N
616	chr6_ssto_hap7	4113275	4113276	rs9275596	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	IgA nephropathy	1,180 East Asian ancestry cases, 899 East Asian ancestry controls	NA	6p21.32	NR	rs9275596-T	NR	6E-10				Illumina [NR] (imputed)	N
616	chr6_ssto_hap7	4113275	4113276	rs9275596	32912934	Li M	2020-09-10	J Am Soc Nephrol	Genome-Wide Meta-Analysis Identifies Three Novel Susceptibility Loci and Reveals Ethnic Heterogeneity of Genetic Susceptibility for IgA Nephropathy.	IgA nephropathy	2,628 Chinese ancestry cases, 11,563 Chinese ancestry controls	6,879 Han Chinese ancestry cases, 9,019 Han Chinese ancestry controls, 1,039 Italian ancestry cases, 1,289 Italian ancestry controls	6p21.32	DQB1.DRB1	rs9275596-T	0.8466025166479287	2E-13	(East Asian)	1.4409347	[1.3070519220741-1.58853123859263]	NR [3611808] (imputed)	N
616	chr6_ssto_hap7	4113275	4113276	rs9275596	25710614	Hong X	2015-02-24	Nat Commun	Genome-wide association study identifies peanut allergy-specific loci and evidence of epigenetic mediation in US children.	Peanut allergy	316 European ancestry child cases, 144 European ancestry non-allergic non-sensitized normal child controls, 589 European ancestry uncertain phenotype child controls, 1,148 European ancestry uncertain phenotype adult controls	62 European ancestry child cases, 69 European ancestry child controls, 24 child cases, 58 child controls	6p21.32	HLA-DRB1, HLA-DQA1, HLA-DQB1, HLA-DQA2	rs9275596-C	0.35	6E-11	(EA)	1.7	[1.40-2.10]	Illumina [6459842] (imputed)	N
616	chr6_ssto_hap7	4113275	4113276	rs9275596	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	6p21.32	HLA-DQB1, HLA-DQA1, HLA-DRB1	rs9275596-T	0.8	1E-19	(East Asian)	1.69	[NR]	Illumina [> 1000000] (imputed)	N
616	chr6_ssto_hap7	4113275	4113276	rs9275596	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	6p21.32	HLA-DQB1, HLA-DQA1, HLA-DRB1	rs9275596-T	0.65	3E-31		1.44	[NR]	Illumina [> 1000000] (imputed)	N
616	chr6_ssto_hap7	4113275	4113276	rs9275596	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	6p21.32	HLA-DQB1, HLA-DQA1, HLA-DRB1	rs9275596-T	0.65	2E-15	(EA)	1.35		Illumina [> 1000000] (imputed)	N
616	chr6_ssto_hap7	4113275	4113276	rs9275596	21399633	Gharavi AG	2011-03-13	Nat Genet	Genome-wide association study identifies susceptibility loci for IgA nephropathy.	Nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls	712 Han Chinese ancestry cases, 748 Han Chinese ancestry controls, 1,238 European ancestry cases, 1,172 European ancestry controls	6p21.32	HLA-DQB1, HLA-DRB1, HLA-DQA1	rs9275596-?	0.73 (EA)	2E-26		1.59	[NR]	Illumina [498322]	N
616	chr6_ssto_hap7	4113313	4113314	rs6935723	25217962	Heap GA	2014-09-14	Nat Genet	HLA-DQA1-HLA-DRB1 variants confer susceptibility to pancreatitis induced by thiopurine immunosuppressants.	Response to thiopurine immunosuppressants in inflammatory bowel disease (pancreatitis) (azathioprine and mercaptopurine)	172 European ancestry cases, 2,035 European ancestry controls	78 European ancestry cases, 472 controls	6p21.32	HLA region	rs6935723-C	0.27	1E-21		2.46	[2.04-2.98]	Affymetrix, Illumina [2819700] (imputed)	N
616	chr6_ssto_hap7	4113320	4113321	rs3104402	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	XXbac-BPG254F23.7	rs3104402-T	NR	3E-10		0.035252	[0.024-0.046] unit increase	Affymetrix [323123] (imputed)	N
616	chr6_ssto_hap7	4113320	4113321	rs3104402	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	6p21.32	NR	rs3104402-?	NR	1E-8		0.1164	[0.076-0.157] unit decrease	Illumina [at least 560000] (imputed)	N
616	chr6_ssto_hap7	4113320	4113321	rs3104402	22658931	Pajewski NM	2012-05-30	Vaccine	A genome-wide association study of host genetic determinants of the antibody response to Anthrax Vaccine Adsorbed.	Immune response to anthrax vaccine	726 European ancestry individuals	NA	6p21.32	HLA-DRB1, HLA-DQA1	rs3104402-A	NR	6E-6		0.165	[0.094-0.236] unit decrease	Affymetrix [736996]	N
616	chr6_ssto_hap7	4113637	4113638	rs3998158	33591409	Koskela M	2021-02-16	Pediatr Nephrol	HLA-DQ and HLA-DRB1 alleles associated with Henoch-Schonlein purpura nephritis in Finnish pediatric population: a genome-wide association study.	Immunoglobulin A vasculitis	46 Finnish ancestry cases, 18,757 Finnish ancestry controls	NA	6p21.32	NR	rs3998158-C	0.3	4E-9		4.39	[3.33-5.79]	Illumina [NR] (imputed)	N
616	chr6_ssto_hap7	4113664	4113665	rs3998159	26272072	Jiang X	2015-08-13	Rheumatology (Oxford)	An Immunochip-based interaction study of contrasting interaction effects with smoking in ACPA-positive versus ACPA-negative rheumatoid arthritis.	ACPA-positive rheumatoid arthritis (smoking interaction)	340 European ancestry never-smoker cases, 493 European ancestry ever-smoker cases, 746 European ancestry never-smoker controls, 994 European ancestry ever-smoker controls	187 European ancestry never-smoker cases, 421 European ancestry ever-smoker cases, 461 European ancestry never-smoker controls, 447 European ancestry ever-smoker controls	6p21.32	NR	rs3998159-?	NR	2E-6	(adjusted for HLA shared epitope)	1.724138	[1.22-2.94]	Illumina [133648] (imputed)	N
616	chr6_ssto_hap7	4113780	4113781	rs3957147	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	XXbac-BPG254F23.7	rs3957147-T	NR	5E-9		0.0232882	[0.015-0.031] unit increase	Affymetrix [323123] (imputed)	N
616	chr6_ssto_hap7	4113780	4113781	rs3957147	32534018	Liu X	2020-06-10	Brain Behav Immun	Genetic factors underlying the bidirectional relationship between autoimmune and mental disorders - findings from a Danish population-based study.	Autoimmune traits	1,383 Danish ancestry cases, 62,656 Danish ancestry controls	NA	6p21.32	NR	rs3957147-T	0.21	9E-9		1.34	[1.21-1.48]	NR [7721839] (imputed)	N
616	chr6_ssto_hap7	4113819	4113820	rs3104404	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	150,545 East Asian ancestry individuals	NA	6p21.32		rs3104404-A	0.356773	3E-10		0.0227	[0.016-0.03] unit decrease	Illumina [13478866] (imputed)	N
616	chr6_ssto_hap7	4113844	4113845	rs35122968	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p21.32	HLA-DQA2	rs35122968-C	0.043	4E-11		0.2	[0.14-0.26] unit increase	Affymetrix, Illumina [7374092] (imputed)	N
616	chr6_ssto_hap7	4113852	4113853	rs3129731	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	6p21.32		rs3129731-G	0.795841844	3E-12		0.07240271	[0.052-0.093] unit decrease	Illumina [13134967] (imputed)	N
616	chr6_ssto_hap7	4113873	4113874	rs2894381	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	6p21.32		rs2894381-A	0.422035	4E-8		0.0201838	[0.013-0.027] unit increase	Illumina [13476266] (imputed)	N
616	chr6_ssto_hap7	4113873	4113874	rs2894381	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	121,047 East Asian ancestry individuals	NA	6p21.32	NR	rs2894381-G	0.566792	3E-10		0.026702	[0.018-0.035] SD units decrease	Affymetrix, Illumina [16286195] (imputed)	N
616	chr6_ssto_hap7	4113873	4113874	rs2894381	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	6p21.32		rs2894381-?	NR	6E-9		0.0142926	[0.0092-0.0194] unit decrease	Affymetrix [20259828] (imputed)	N
616	chr6_ssto_hap7	4114039	4114040	rs3997848	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.32		rs3997848-T	0.676	4E-17				Affymetrix [10369434] (imputed)	N
616	chr6_ssto_hap7	4114039	4114040	rs3997848	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	XXbac-BPG254F23.7	rs3997848-G	NR	2E-8		0.0168279	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
616	chr6_ssto_hap7	4114039	4114040	rs3997848	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	XXbac-BPG254F23.7	rs3997848-G	NR	1E-8		0.0171568	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
616	chr6_ssto_hap7	4114039	4114040	rs3997848	33545615	Hsu LA	2021-01-19	Atherosclerosis	Circulating chemerin levels are determined through circulating platelet counts in nondiabetic Taiwanese people: A bidirectional Mendelian randomization study.	Chemerin levels	3,887 Han Chinese ancestry individuals	NA	6p21.32	HLA	rs3997848-?	NR	5E-8		0.017	[0.012-0.022] unit increase (adjusted)	Affymetrix [610203]	N
616	chr6_ssto_hap7	4114039	4114040	rs3997848	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p21.32	HLA-DQA2	rs3997848-G	0.117	2E-14		0.135	[0.1-0.17] unit increase	Affymetrix, Illumina [7374092] (imputed)	N
616	chr6_ssto_hap7	4114047	4114048	rs3997849	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	6p21.32	NR	rs3997849-T	0.262	3E-6	(IFNAR2_of_CD8p_T)			Illumina [5084123] (imputed)	N
616	chr6_ssto_hap7	4114074	4114075	rs9275599	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs9275599-T	0.032	2E-16	(conditional)	1.585	[1.48-1.69]	Illumina [11270530] (imputed)	N
616	chr6_ssto_hap7	4114235	4114236	rs113721192	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.32	Intergenic	rs113721192-?		1E-6		1.06	[1.03-1.08]	Illumina [7645193] (imputed)	N
616	chr6_ssto_hap7	4114235	4114236	rs113721192	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.32	Intergenic	rs113721192-?		3E-7		1.76	[1.42-2.18]	Illumina [7645193] (imputed)	N
616	chr6_ssto_hap7	4114309	4114310	rs9275601	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.32		rs9275601-C	0.559	2E-19				Affymetrix [10369434] (imputed)	N
616	chr6_ssto_hap7	4114309	4114310	rs9275601	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.32		rs9275601-C	0.559	1E-20				Affymetrix [10369434] (imputed)	N
616	chr6_ssto_hap7	4114457	4114458	rs9275602	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	XXbac-BPG254F23.7	rs9275602-A	NR	1E-8		0.0219542	[0.014-0.029] unit increase	Affymetrix [323123] (imputed)	N
616	chr6_ssto_hap7	4114457	4114458	rs9275602	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs9275602-?	NR	8E-10				Affymetrix [~ 8270000] (imputed)	N
616	chr6_ssto_hap7	4114457	4114458	rs9275602	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	6p21.32	NR	rs9275602-?	NR	5E-29	(conditional)			Affymetrix [15688218] (imputed)	N
616	chr6_ssto_hap7	4115230	4115231	rs200025476	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.32	NR	rs200025476-T	0.011	3E-9		0.507765	[0.34-0.67] unit increase	Affymetrix [up to 8900000] (imputed)	N
616	chr6_ssto_hap7	4115230	4115231	rs200025476	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	6p21.32	NR	rs200025476-T	0.011	2E-6	(women)	0.688868	[0.41-0.97] unit increase	Affymetrix [up to 8900000] (imputed)	N
616	chr6_ssto_hap7	4115346	4115347	rs9391746	33961016	Moksnes MR	2021-05-07	Hum Mol Genet	Genome-wide association study of cardiac troponin I in the general population.	High-sensitivity cardiac troponin I concentration	48,115 European ancestry individuals	NA	6p21.32		rs9391746-T	0.0718	1E-8		0.08	[0.06-0.1] unit increase	Illumina [26711992] (imputed)	N
616	chr6_ssto_hap7	4116010	4116011	rs5024431	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6p21.32		rs5024431-?	NR	6E-17		0.897905	[0.87-0.92]	NR [685523]	N
616	chr6_ssto_hap7	4116180	4116181	rs6457637	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on plasmacytoid Dendritic Cell	2,872 Sardinian (founder/genetic isolate) ancestry individuals	NA	6p21.32		rs6457637-G	0.07647	9E-15		0.4484	[0.34-0.56] unit decrease	Illumina [17926607] (imputed)	N
616	chr6_ssto_hap7	4116598	4116599	rs9275642	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Skin cancer	25,928 European ancestry cases, 466,275 European ancestry controls, 154 East Asian ancestry cases, 178,572 East Asian ancestry controls	NA	6p21.32		rs9275642-T	NR	4E-21		0.1097	[0.087-0.132] unit decrease	Affymetrix, Illumina [25845421] (imputed)	N
616	chr6_ssto_hap7	4116598	4116599	rs9275642	27539887	Chahal HS	2016-08-19	Nat Commun	Genome-wide association study identifies 14 novel risk alleles associated with basal cell carcinoma.	Basal cell carcinoma	12.945 European ancestry cases, 274,252 European ancestry controls	4,242 European ancestry cases, 12,802 European ancestry controls	6p21.32	HLA-DQA2	rs9275642-C	0.79	2E-12		1.1235955	[NR]	Illumina [at least 560000] (imputed)	N
616	chr6_ssto_hap7	4116861	4116862	rs41288885	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.32	XXbac-BPG254F23.7	rs41288885-G	0.058676	5E-9		0.028841805	[0.019-0.039] unit increase	Affymetrix [93095623] (imputed)	N
616	chr6_ssto_hap7	4116861	4116862	rs41288885	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.32	NR	rs41288885-?	NR	9E-10				Affymetrix [~ 8270000] (imputed)	N
616	chr6_ssto_hap7	4117043	4117044	rs3998154	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.32		rs3998154-G	0.585	9E-27				Affymetrix [10369434] (imputed)	N
616	chr6_ssto_hap7	4117043	4117044	rs3998154	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	6p21.32		rs3998154-G	0.585	1E-22				Affymetrix [10369434] (imputed)	N
616	chr6_ssto_hap7	4117213	4117214	rs3916765	34716350	Lin WY	2021-10-29	Nat Commun	Genome-wide association study identifies susceptibility loci for acute myeloid leukemia.	Acute myeloid leukemia (normal cytogenetics)	3,041 European ancestry cases, 6,760 European ancestry controls	977 European ancestry cases, 3,728 European ancestry controls	6p21.32		rs3916765-G	NR	2E-10		1.72	[1.46-2.03]	Affymetrix, Illumina [6496414] (imputed)	N
616	chr6_ssto_hap7	4117213	4117214	rs3916765	22693455	Perry JR	2012-05-31	PLoS Genet	Stratifying type 2 diabetes cases by BMI identifies genetic risk variants in LAMA1 and enrichment for risk variants in lean compared to obese cases.	Type 2 diabetes	2,112 lean type 2 diabetes cases, 4,123 obese type 2 diabetes cases, 54,412 controls	2,881 lean type 2 diabetes cases, 8,702 obese type 2 diabetes cases, 18,957 controls	6p21.32	HLA-DQA2	rs3916765-A	0.12	1E-6	(Lean)	1.21	[1.12-1.31]	NR [NR]	N
616	chr6_ssto_hap7	4118292	4118293	rs9275667	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	XXbac-BPG254F23.7	rs9275667-T	NR	1E-15		0.0312755	[0.024-0.039] unit decrease	Affymetrix [323858] (imputed)	N
616	chr6_ssto_hap7	4118292	4118293	rs9275667	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	XXbac-BPG254F23.7	rs9275667-T	NR	6E-15		0.0304364	[0.023-0.038] unit decrease	Affymetrix [127266] (imputed)	N
616	chr6_ssto_hap7	4119640	4119641	rs9275698	21804548	Hirota T	2011-07-31	Nat Genet	Genome-wide association study identifies three new susceptibility loci for adult asthma in the Japanese population.	Asthma	1,532 Japanese ancestry cases, 3,304 Japanese ancestry controls	5,639 Japanese ancestry cases, 24,608 Japanese ancestry controls	6p21.32	HLA-DQA2	rs9275698-T	0.79	5E-12		1.18	[1.12-1.24]	Illumina [458847]	N
616	chr6_ssto_hap7	4119887	4119888	rs9275710	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	XXbac-BPG254F23.7	rs9275710-T	NR	1E-9		0.0190333	[0.013-0.025] unit decrease	Affymetrix [323858] (imputed)	N
616	chr6_ssto_hap7	4119887	4119888	rs9275710	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	XXbac-BPG254F23.7	rs9275710-T	NR	9E-9		0.018054	[0.012-0.024] unit decrease	Affymetrix [127266] (imputed)	N
616	chr6_ssto_hap7	4121553	4121554	rs117522574	32771030	Tangtanatakul P	2020-08-08	Arthritis Res Ther	Meta-analysis of genome-wide association study identifies FBN2 as a novel locus associated with systemic lupus erythematosus in Thai population.	Systemic lupus erythematosus	487 Thai cases, 1,606 Thai controls	405 Thai cases, 1,590 Thai controls	6p21.32	XXbac-BPG254F23.7, HLA-DQB3	rs117522574-G	0.19	3E-8		1.5082	[NR]	Illumina [421909] (imputed)	N
616	chr6_ssto_hap7	4122693	4122694	rs9275844	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	XXbac-BPG254F23.7	rs9275844-T	NR	2E-8		0.0217782	[0.014-0.029] unit increase	Affymetrix [323123] (imputed)	N
616	chr6_ssto_hap7	4124909	4124910	rs2858892	30657218	Park SY	2019-01-18	Clin Exp Allergy	Longitudinal analysis to better characterize Asthma-COPD Overlap Syndrome (ACOS): Findings from an adult asthma cohort in Korea (COREA).	Adult asthma	731 Korean ancestry cases, 5,915 Korean ancestry controls	NA	6p21.32	NR	rs2858892-?	NR	4E-7		1.34		NR [267429]	N
616	chr6_ssto_hap7	4125668	4125669	rs114803904	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs114803904-C	0.474	1E-24	(cAMP-specific 3',5'-cyclic phosphodiesterase 4D, PDE4D.5255.22.3)	0.29	[0.23-0.35] unit increase	Affymetrix [10572788] (imputed)	N
616	chr6_ssto_hap7	4126742	4126743	rs73732611	33558538	Gebresilase T	2021-02-08	Sci Rep	Replication of HLA class II locus association with susceptibility to podoconiosis in three Ethiopian ethnic groups.	Podoconiosis	1,137 Ethiopian ancestry cases, 1,152 Ethiopian ancestry controls	NA	6p21.32	HLA-DQB3	rs73732611-C	0.07	5E-9				Illumina [2201695]	N
616	chr6_ssto_hap7	4129452	4129453	rs2859113	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	NR	rs2859113-C	0.378328302013423	6E-8	(IGP59)	0.1817	[0.12-0.25] unit decrease	Illumina [~ 2500000] (imputed)	N
616	chr6_ssto_hap7	4131750	4131751	rs2858884	20711174	Hor H	2010-08-15	Nat Genet	Genome-wide association study identifies new HLA class II haplotypes strongly protective against narcolepsy.	Narcolepsy	562 European ancestry cases, 702 European ancestry controls	370 cases, 495 controls	6p21.32	HLA-DQA2	rs2858884-A	0.81	3E-8		1.79	[1.45-2.17]	Affymetrix [392949]	N
616	chr6_ssto_hap7	4132888	4132889	rs9276244	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	IgA levels	16,883 Icelandic ancestry individuals	2,151 Swedish ancestry individuals	6p21.32	HLA-DQA2	rs9276244-G	0.328	3E-14		0.09	NR SD units increase	Illumina [21568490] (imputed)	N
616	chr6_ssto_hap7	4133641	4133642	rs9276263	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p21.32	NR	rs9276263-?	NR	7E-16		0.1146	[0.087-0.142] unit increase	Illumina [at least 560000] (imputed)	N
616	chr6_ssto_hap7	4140032	4140032	rs11426605	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs11426605-T	0.966	3E-15	(conditional)	0.648	[0.54-0.76]	Illumina [11270530] (imputed)	N
616	chr6_ssto_hap7	4141888	4141889	rs9461806	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.32		rs9461806-C	0.595	2E-17				Affymetrix [10369434] (imputed)	N
616	chr6_ssto_hap7	4141888	4141889	rs9461806	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.32		rs9461806-C	0.595	1E-25				Affymetrix [10369434] (imputed)	N
616	chr6_ssto_hap7	4142074	4142075	rs115018313	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	6p21.32		rs115018313-C	NR	7E-33		0.284	[0.24-0.33] unit increase	Affymetrix, Illumina [25845091] (imputed)	N
616	chr6_ssto_hap7	4142522	4142523	rs9276423	26379185	Garcia-Etxebarria K	2015-09-17	PLoS One	No Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity.	Mild influenza (H1N1) infection	107 European ancestry mild cases, 549 European ancestry population controls	NA	6p21.32	HLA-DQA2	rs9276423-?	0.0	3E-8				Affymetrix [547296]	N
616	chr6_ssto_hap7	4143524	4143525	rs9276427	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first birth	542,901 European ancestry individuals	NA	6p21.32	HLA-DQA2	rs9276427-T	0.5217	3E-8		0.0532	[0.034-0.072] unit increase	NR [9744772] (imputed)	N
616	chr6_ssto_hap7	4143524	4143525	rs9276427	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQA2	rs9276427-C	NR	6E-9		0.0164173	[0.011-0.022] unit increase	Affymetrix [319769] (imputed)	N
616	chr6_ssto_hap7	4143524	4143525	rs9276427	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DQA2	rs9276427-C	NR	1E-8		0.0160937	[0.011-0.022] unit increase	Affymetrix [319769] (imputed)	N
616	chr6_ssto_hap7	4143524	4143525	rs9276427	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DQA2	rs9276427-C	NR	3E-8		0.0158296	[0.01-0.021] unit increase	Affymetrix [321169] (imputed)	N
616	chr6_ssto_hap7	4143524	4143525	rs9276427	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.32		rs9276427-C	0.49390500000000004	2E-10		1.0275491	[1.02-1.03]	Affymetrix, Illumina [9851866] (imputed)	N
616	chr6_ssto_hap7	4143676	4143677	rs41288889	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs41288889-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
616	chr6_ssto_hap7	4144333	4144334	rs9276434	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	6p21.32	HLA-DQA2	rs9276434-T	NR	4E-17		0.0479129	[0.037-0.059] unit decrease	Illumina [13520550] (imputed)	N
616	chr6_ssto_hap7	4145534	4145535	rs9276435	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cervical cancer	6,563 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs9276435-C	NR	2E-10		1.1631	NR	Affymetrix [7846216] (imputed)	N
616	chr6_ssto_hap7	4153086	4153087	rs2077046	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQB2	rs2077046-C	NR	2E-8		0.0159433	[0.01-0.021] unit increase	Affymetrix [319769] (imputed)	N
616	chr6_ssto_hap7	4156858	4156859	rs2301271	21408207	Chung SA	2011-03-03	PLoS Genet	Differential genetic associations for systemic lupus erythematosus based on anti-dsDNA autoantibody production.	Systemic lupus erythematosus	811 anti-dsDNA positive European ancestry cases, 906 anti-dsDNA negative European ancestry cases, 4,813 European ancestry controls	NA	6p21.32	HLA-DQA2	rs2301271-T	0.40	2E-12	(anti-dsDNA -)	1.47	[1.32-1.63]	Illumina [421318] (imputed)	N
616	chr6_ssto_hap7	4157939	4157940	rs9276578	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p21.32	HLA-DQB2	rs9276578-G	NR	2E-9		0.0231702	[0.016-0.031] unit decrease	Affymetrix [323858] (imputed)	N
616	chr6_ssto_hap7	4158468	4158469	rs1049110	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	HLA-DQA2, HLA-DQB2	rs1049110-C	0.346381764494382	2E-8	(IGP42)	0.1909	[0.12-0.26] unit increase	Illumina [~ 2500000] (imputed)	N
616	chr6_ssto_hap7	4158468	4158469	rs1049110	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	HLA-DQA2, HLA-DQB2	rs1049110-C	0.34601888034188	4E-8	(IGP2)	0.1853	[0.12-0.25] unit increase	Illumina [~ 2500000] (imputed)	N
616	chr6_ssto_hap7	4158874	4158875	rs9276580	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.32		rs9276580-T	0.46	8E-18				Affymetrix [10369434] (imputed)	N
616	chr6_ssto_hap7	4158990	4158991	rs7753017	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs7753017-A	0.237	5E-43		0.745	[0.7-0.79]	Illumina [11270530] (imputed)	N
616	chr6_ssto_hap7	4160307	4160308	rs2395258	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	6p21.32	HLA-DQB2	rs2395258-T	NR	6E-9		0.0205128	[0.014-0.027] unit increase	Illumina [13519193] (imputed)	N
616	chr6_ssto_hap7	4160723	4160724	rs2006163	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.32		rs2006163-A	0.462	4E-35				Affymetrix [10369434] (imputed)	N
616	chr6_ssto_hap7	4161399	4161400	rs2008560	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQB2	rs2008560-G	NR	3E-12		0.0196979	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
616	chr6_ssto_hap7	4161399	4161400	rs2008560	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DQB2	rs2008560-G	NR	2E-11		0.0189439	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
616	chr6_ssto_hap7	4161399	4161400	rs2008560	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DQB2	rs2008560-G	NR	1E-10		0.0183237	[0.013-0.024] unit increase	Affymetrix [321169] (imputed)	N
616	chr6_ssto_hap7	4161399	4161400	rs2008560	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling worry	372,869 European ancestry individuals	NA	6p21.32	C4B	rs2008560-C	0.496591	3E-8		5.56	unit decrease	NR [10847151] (imputed)	N
616	chr6_ssto_hap7	4161677	4161678	rs7453920	27244555	Li Y	2016-05-31	Nat Commun	Genome-wide association study identifies 8p21.3 associated with persistent hepatitis B virus infection among Chinese.	Persistent hepatitis B virus infection	1,251 Chinese ancestry persistently infected cases, 1,057 Chinese ancestry spontaneously recovered controls	3,905 Chinese ancestry persistently infected cases, 3,356 Chinese ancestry spontaneously recovered controls	6p21.32	HLA-DQB2	rs7453920-A		6E-6		2.0	[1.47-2.78]	Affymetrix, Illumina [up to 4494311] (imputed)	N
616	chr6_ssto_hap7	4161677	4161678	rs7453920	25802187	Jiang DK	2015-04-28	Hepatology	Genetic variants in five novel loci including CFB and CD40 predispose to chronic hepatitis B.	Chronic hepatitis B infection	2,514 Chinese ancestry cases, 1,130 Chinese ancestry controls	6,600 Chinese ancestry cases, 8,127 Chinese ancestry controls	6p21.32	HLA-DQB2	rs7453920-A	0.88	1E-60		2.0	[1.82-2.17]	Illumina [3680900] (imputed)	N
616	chr6_ssto_hap7	4161677	4161678	rs7453920	24940741	Chang SW	2014-06-18	PLoS One	A genome-wide association study on chronic HBV infection and its clinical progression in male Han-Taiwanese.	Chronic hepatitis B infection	321 Chinese ancestry cases, 304 Chinese ancestry controls	1,302 Chinese ancestry cases, 761 Chinese ancestry controls	6p21.32	HLA-DQB2	rs7453920-G	0.051	7E-15		2.31	[1.87-2.85]	Illumina [456262]	N
616	chr6_ssto_hap7	4161677	4161678	rs7453920	24162738	Hu Z	2013-10-27	Nat Genet	New loci associated with chronic hepatitis B virus infection in Han Chinese.	Hepatitis B	951 Han Chinese ancestry HBV carrier cases, 937 Han Chinese ancestry HBV cleared controls	4,230 Chinese ancestry HBV carrier cases, 3,051 Chinese ancestry HBV cleared controls, 2,622 Chinese ancestry controls	6p21.32	HLA-DQB2	rs7453920-G	0.87	5E-37		1.8868	[1.69-2.08]	Illumina [490610]	N
616	chr6_ssto_hap7	4161677	4161678	rs7453920	23760081	Kim YJ	2013-06-10	Hum Mol Genet	A genome-wide association study identified new variants associated with the risk of chronic hepatitis B.	Chronic hepatitis B infection	400 Korean ancestry cases, 1,000 Korean ancestry controls	971 Korean ancestry cases, 1,938 Korean ancestry controls	6p21.32	HLA-DQ	rs7453920-?	NR	7E-26		2.0	[1.72-2.27]	Illumina [719265]	N
616	chr6_ssto_hap7	4161677	4161678	rs7453920	23349640	Vijai J	2013-01-17	PLoS Genet	Susceptibility loci associated with specific and shared subtypes of lymphoid malignancies.	Lymphoma	275 Follicular non-Hodgkin's Lymphoma cases, 269 diffuse large B-cell non-Hodgkin's Lymphoma cases, 198 other non-Hodgkin's Lymphoma cases, 202 Hodgkin's Lymphoma cases, 4,044 controls	202 European ancestry Follicular non-Hodgkin's Lymphoma cases, 367 European ancestry diffuse large B-cell non-Hodgkin's Lymphoma cases, 577 European ancestry other non-Hodgkin's Lymphoma cases, 99 European ancestry Hodgkin's Lymphoma cases, 2,596 European ancestry controls	6p21.32	HLA-DQB2	rs7453920-?	NR	5E-6	(LYM)	1.19	[1.11-1.3]	Affymetrix [530583]	N
616	chr6_ssto_hap7	4161677	4161678	rs7453920	21750111	Mbarek H	2011-07-12	Hum Mol Genet	A genome-wide association study of chronic hepatitis B identified novel risk locus in a Japanese population.	Hepatitis B	458 Japanese ancestry cases, 2,056 Japanese ancestry controls	2,209 Japanese ancestry cases, 4,440 Japanese ancestry controls	6p21.32	HAL-DQB2	rs7453920-G	0.83	6E-28		1.81	[1.62-2.01]	Illumina [423627]	N
616	chr6_ssto_hap7	4161751	4161752	rs2051549	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DQB2	rs2051549-G	NR	4E-9		0.0181006	[0.012-0.024] unit increase	Affymetrix [323123] (imputed)	N
616	chr6_ssto_hap7	4161751	4161752	rs2051549	23053960	Lee YH	2012-10-07	Mol Biol Rep	Genome-wide pathway analysis of genome-wide association studies on systemic lupus erythematosus and rheumatoid arthritis.	Systemic lupus erythematosus	1,527 European ancestry cases, 3,421 European ancestry controls,	NA	6p21.32	HLA-DQA2	rs2051549-?	NR	3E-22				Illumina [737984]	N
616	chr6_ssto_hap7	4162605	4162606	rs2071550	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	6p21.32	SLC44A4, EHMT2, HLA-DQB2, STK19, CYP21A2, TNXB	rs2071550-?	NR	7E-6				Affymetrix, Illumina [18800000] (imputed)	N
616	chr6_ssto_hap7	4162605	4162606	rs2071550	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	6p21.32	SLC44A4, EHMT2, HLA-DQB2, STK19, CYP21A2, TNXB	rs2071550-?	NR	1E-9	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
616	chr6_ssto_hap7	4162605	4162606	rs2071550	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	6p21.32	SLC44A4, EHMT2, HLA-DQB2, STK19, CYP21A2, TNXB	rs2071550-?	NR	5E-8	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
616	chr6_ssto_hap7	4165293	4165294	rs33998906	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQB2	rs33998906-T	NR	5E-8		0.0304833	[0.02-0.041] unit increase	Affymetrix [319769] (imputed)	N
616	chr6_ssto_hap7	4165293	4165294	rs33998906	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	6p21.32	HLA-DQB2	rs33998906-T	NR	2E-8		0.0314602	[0.021-0.042] unit increase	Affymetrix [319769] (imputed)	N
616	chr6_ssto_hap7	4165969	4165970	rs9276601	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQB2	rs9276601-G	NR	4E-8		0.0202269	[0.013-0.027] unit decrease	Affymetrix [319769] (imputed)	N
616	chr6_ssto_hap7	4167670	4167671	rs9296042	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Scarlet fever	6,812 European ancestry cases, 113,837 European ancestry controls	NA	6p21.32	NR	rs9296042-?	NR	3E-6		0.0873	[0.051-0.124] unit decrease	Illumina [at least 560000] (imputed)	N
616	chr6_ssto_hap7	4168360	4168361	rs9276606	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DQB2	rs9276606-T	NR	1E-9		0.021091	[0.014-0.028] unit decrease	Affymetrix [323858] (imputed)	N
616	chr6_ssto_hap7	4168360	4168361	rs9276606	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	HLA-DQB2	rs9276606-T	NR	2E-9		0.0208414	[0.014-0.028] unit decrease	Affymetrix [127266] (imputed)	N
616	chr6_ssto_hap7	4168360	4168361	rs9276606	23028341	Yang X	2012-09-13	PLoS Genet	Genome-wide association study for serum complement C3 and C4 levels in healthy Chinese subjects.	Complement C3 and C4 levels	1,999 Han Chinese ancestry male individuals	1,496 Han Chinese ancestry male individuals	6p21.32	HLA-DQB	rs9276606-T	0.15	3E-22	(Serum level of C4)	0.09	[0.070-0.110] g/L decrease	Illumina [1940245] (imputed)	N
616	chr6_ssto_hap7	4172080	4172081	rs2857212	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.32		rs2857212-A	0.635	2E-33				Affymetrix [10369434] (imputed)	N
616	chr6_ssto_hap7	4172080	4172081	rs2857212	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.32		rs2857212-A	0.635	2E-31				Affymetrix [10369434] (imputed)	N
616	chr6_ssto_hap7	4172080	4172081	rs2857212	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.32		rs2857212-A	0.635	2E-57				Affymetrix [10369434] (imputed)	N
616	chr6_ssto_hap7	4172675	4172676	rs2621419	33235445	Lee YJ	2020-11-17	Int J Chron Obstruct Pulmon Dis	A Genome-Wide Association Study in Early COPD: Identification of One Major Susceptibility Loci.	Early chronic obstructive pulmonary disease in never smokers	38 Korean ancestry cases, 1,778 Korean ancestry controls	NA	6p21.32	HLA-DQB2	rs2621419-?	NR	9E-6		0.68	NR	Affymetrix [345072]	N
616	chr6_ssto_hap7	4173537	4173538	rs2621416	23349640	Vijai J	2013-01-17	PLoS Genet	Susceptibility loci associated with specific and shared subtypes of lymphoid malignancies.	Lymphoma	275 Follicular non-Hodgkin's Lymphoma cases, 269 diffuse large B-cell non-Hodgkin's Lymphoma cases, 198 other non-Hodgkin's Lymphoma cases, 202 Hodgkin's Lymphoma cases, 4,044 controls	202 European ancestry Follicular non-Hodgkin's Lymphoma cases, 367 European ancestry diffuse large B-cell non-Hodgkin's Lymphoma cases, 577 European ancestry other non-Hodgkin's Lymphoma cases, 99 European ancestry Hodgkin's Lymphoma cases, 2,596 European ancestry controls	6p21.32	HLA-DQB2, TAP2	rs2621416-G	NR	2E-9	(FL)	1.57	[NR]	Affymetrix [530583]	N
616	chr6_ssto_hap7	4173764	4173765	rs9276610	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DQB2	rs9276610-A	NR	1E-9		0.0272626	[0.018-0.036] unit increase	Affymetrix [323123] (imputed)	N
616	chr6_ssto_hap7	4174496	4174497	rs12663317	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	6p21.32	NR	rs12663317-?	NR	6E-12				Affymetrix [~ 8270000] (imputed)	N
616	chr6_ssto_hap7	4176016	4176017	rs2857204	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	6p21.32	intergenic	rs2857204-T	0.327	9E-19		0.03378215	[0.026-0.041] unit decrease	Affymetrix [~ 2500000] (imputed)	N
616	chr6_ssto_hap7	4176109	4176110	rs28724893	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DQB2	rs28724893-T	NR	2E-8		0.0157586	[0.01-0.021] unit decrease	Affymetrix [319769] (imputed)	N
616	chr6_ssto_hap7	4176109	4176110	rs28724893	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DQB2	rs28724893-T	NR	4E-11		0.0202278	[0.014-0.026] unit increase	Affymetrix [323123] (imputed)	N
616	chr6_ssto_hap7	4176503	4176504	rs9276643	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6p21.32	NR	rs9276643-C	0.6647	8E-12		1.0858942	[1.06-1.11]	Affymetrix [15688218] (imputed)	N
616	chr6_ssto_hap7	4176503	4176504	rs9276643	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	6p21.32	NR	rs9276643-?	NR	7E-105	(conditional)			Affymetrix [15688218] (imputed)	N
616	chr6_ssto_hap7	4177196	4177197	rs12661352	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs12661352-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
616	chr6_ssto_hap7	4177998	4177999	rs9501203	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.32		rs9501203-T	0.677	8E-12				Affymetrix [10369434] (imputed)	N
616	chr6_ssto_hap7	4180622	4180623	rs28986343	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous malignant melanoma	36,760 European ancestry cases, 375,188 European ancestry controls	NA	6p21.32	HLA-DQB2	rs28986343-C	0.952	2E-8		1.1531	NR	Affymetrix, Illumina [NR] (imputed)	N
616	chr6_ssto_hap7	4181158	4181159	rs574879686	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs574879686-A	0.018	1E-6		0.701	[0.56-0.84]	Illumina [11270530] (imputed)	N
616	chr6_ssto_hap7	4183085	4183086	rs7749543	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6p21.32	NR	rs7749543-G	0.6269	8E-10		1.0775862	[1.05-1.1]	Affymetrix [15688218] (imputed)	N
616	chr6_ssto_hap7	4183085	4183086	rs7749543	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	6p21.32	NR	rs7749543-?	NR	8E-115	(conditional)			Affymetrix [15688218] (imputed)	N
616	chr6_ssto_hap7	4183085	4183086	rs7749543	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	6p21.32	NR	rs7749543-?	NR	3E-6		0.0596	[0.035-0.085] unit increase	Illumina [at least 560000] (imputed)	N
616	chr6_ssto_hap7	4190063	4190064	rs7758736	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DOB	rs7758736-A	NR	1E-9		0.02222	[0.015-0.029] unit decrease	Affymetrix [321169] (imputed)	N
616	chr6_ssto_hap7	4193179	4193180	rs4318925	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	6p21.32	HLA-DOB	rs4318925-T	NR	3E-9		0.0220014	[0.015-0.029] unit decrease	Affymetrix [321169] (imputed)	N
617	chr6_ssto_hap7	4195188	4195189	rs2857151	22446962	Onouchi Y	2012-03-25	Nat Genet	A genome-wide association study identifies three new risk loci for Kawasaki disease.	Kawasaki disease	428 Japanese ancestry cases, 3,379 Japanese ancestry controls	754 Japanese ancestry cases, 947 Japanese ancestry controls	6p21.32	HLA-DOB, HLA-DQB2	rs2857151-G	0.76	5E-11		1.47	[1.23-1.77]	Illumina [463793]	N
617	chr6_ssto_hap7	4196208	4196209	rs62398467	34011352	Schwarm C	2021-05-19	Orphanet J Rare Dis	Identification of two novel bullous pemphigoid- associated alleles, HLA-DQA1*05:05 and -DRB1*07:01, in Germans.	Bullous pemphigoid	438 German cases, 417 German controls	NA	6p21.32	HLA-DQB2, HLA-DOB	rs62398467-?	NR	7E-6		0.520158	[0.29-0.75] unit increase	Affymetrix [up to 386296] (imputed)	N
617	chr6_ssto_hap7	4197258	4197259	rs9276731	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DOB	rs9276731-T	NR	1E-15		0.0382096	[0.029-0.048] unit decrease	Affymetrix [323858] (imputed)	N
617	chr6_ssto_hap7	4197258	4197259	rs9276731	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	HLA-DOB	rs9276731-T	NR	3E-14		0.0364203	[0.027-0.046] unit decrease	Affymetrix [127266] (imputed)	N
617	chr6_ssto_hap7	4197258	4197259	rs9276731	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	6p21.32	HLA-DOB	rs9276731-T	NR	1E-8		0.0269325	[0.018-0.036] unit decrease	Affymetrix [323858] (imputed)	N
617	chr6_ssto_hap7	4201066	4201067	rs2621363	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6p21.32	NR	rs2621363-T	0.7091	8E-13		1.0481081	[1.04-1.06]	Affymetrix [15688218] (imputed)	N
617	chr6_ssto_hap7	4201066	4201067	rs2621363	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	6p21.32	NR	rs2621363-?	NR	7E-31	(conditional)			Affymetrix [15688218] (imputed)	N
617	chr6_ssto_hap7	4202157	4202158	rs151165576	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Treatment or medication use - insulin product (UKB data field 20003_1140883066)	4,469 European ancestry cases, 451,807 European ancestry controls	NA	6p21.32		rs151165576-A	0.003916	2E-15		1.58	[1.19-1.97] unit increase	NR [11842647] (imputed)	N
617	chr6_ssto_hap7	4203019	4203020	rs2621355	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.32	Intergenic	rs2621355-G	NR	5E-8		0.0202164	[0.013-0.028] unit increase	Illumina [13520550] (imputed)	N
617	chr6_ssto_hap7	4204533	4204534	rs9276757	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.32		rs9276757-A	0.772	8E-30				Affymetrix [10369434] (imputed)	N
617	chr6_ssto_hap7	4208909	4208910	rs1054684	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DOB	rs1054684-C	NR	2E-10		0.0303692	[0.021-0.04] unit increase	Affymetrix [323123] (imputed)	N
617	chr6_ssto_hap7	4208909	4208910	rs1054684	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	6p21.32	TAP2, HLA-DOB	rs1054684-C	0.115598	1E-11		0.03328803	[0.024-0.043] unit increase	Affymetrix [93095623] (imputed)	N
617	chr6_ssto_hap7	4208909	4208910	rs1054684	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	6p21.32	NR	rs1054684-C	0.114999	1E-8		0.0591419	[0.038-0.08] unit increase	Affymetrix [17914406] (imputed)	N
617	chr6_ssto_hap7	4209910	4209913	rs144227975	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs144227975-CTTT	0.665	4E-15	(conditional)	0.864	[0.83-0.9]	Illumina [11270530] (imputed)	N
617	chr6_ssto_hap7	4210419	4210420	rs9276796	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6p21.32	NR	rs9276796-G	0.3953	1E-20		1.058	[1.046-1.07]	Affymetrix [15688218] (imputed)	N
617	chr6_ssto_hap7	4210654	4210655	rs1812006	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	6p21.32	Intergenic	rs1812006-G	NR	1E-7	(women)	0.0361932	[0.023-0.05] unit decrease	Illumina [13520550] (imputed)	N
617	chr6_ssto_hap7	4211656	4211657	rs11244	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p21.32	HLA-DOB	rs11244-A	0.43	4E-11				Illumina [118177]	N
617	chr6_ssto_hap7	4212044	4212045	rs2071479	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	6p21.32	HLA-DOB	rs2071479-T	0.0273617407137154	7E-11		0.1473	[0.1-0.19] unit increase	NR [5035015] (imputed)	N
617	chr6_ssto_hap7	4212708	4212709	rs2856997	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DOB, TAP2	rs2856997-A	NR	9E-9		0.0165451	[0.011-0.022] unit decrease	Affymetrix [321016] (imputed)	N
617	chr6_ssto_hap7	4213514	4213515	rs2071474	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Strep throat	52,487 European ancestry cases, 22,017 European ancestry controls	NA	6p21.32	NR	rs2071474-?	NR	6E-6		0.027	[0.015-0.039] unit increase	Illumina [at least 560000] (imputed)	N
617	chr6_ssto_hap7	4213537	4213538	rs2071473	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.32		rs2071473-C	0.671	2E-23				Affymetrix [10369434] (imputed)	N
617	chr6_ssto_hap7	4213537	4213538	rs2071473	33106546	Johnson TA	2020-10-26	J Hum Genet	Association of an IGHV3-66 gene variant with Kawasaki disease.	Kawasaki disease	1,276 East Asian ancestry cases, 5,086 East Asian ancestry controls	2,152 East Asian ancestry cases, 2,751 East Asian ancestry controls	6p21.32	HLA-DOB	rs2071473-T	NR	7E-13		1.26	[1.18-1.34]	Affymetrix, Illumina [6265045] (imputed)	N
617	chr6_ssto_hap7	4214018	4214019	rs7383287	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in ever smokers	23,223 European ancestry cases,  16,964 European ancestry controls	NA	6p21.32	HLA-DOB	rs7383287-G	0.224903192	1E-10		1.1205634	[1.082275651-1.160205575]	Illumina [10439017] (imputed)	N
617	chr6_ssto_hap7	4214018	4214019	rs7383287	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	6p21.32	NR	rs7383287-A	NR	1E-7		1.07	[NR]	Illumina [7158791] (imputed)	N
617	chr6_ssto_hap7	4214337	4214338	rs1383258	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	6p21.32	HLA-DOB	rs1383258-A	0.04	2E-10	(EA)	3.68	[2.40-5.64]	Illumina [up to 547389]	N
617	chr6_ssto_hap7	4215715	4215716	rs2071469	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Chronic lymphocytic leukemia	764 White British ancestry cases, 272,079 White British ancestry controls	NA	6p21.32		rs2071469-?	NR	7E-6		0.775782	[0.67-0.89]	NR [663083]	N
617	chr6_ssto_hap7	4217849	4217850	rs3763354	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	6p21.32	Intergenic	rs3763354-G	NR	4E-12		0.0433868	[0.031-0.056] unit decrease	Illumina [13520550] (imputed)	N
617	chr6_ssto_hap7	4217968	4217969	rs1894407	24586183	Medici M	2014-02-27	PLoS Genet	Identification of novel genetic Loci associated with thyroid peroxidase antibodies and clinical thyroid disease.	Thyroid peroxidase antibody positivity	1,769 European ancestry cases, 16,528 European ancestry controls	922 European ancestry cases, 8,068 European ancestry controls	6p21.32	NR	rs1894407-C		1E-7		1.17	[1.11-1.24]	Affymetrix, Illumina [up to 3437411] (imputed)	N
617	chr6_ssto_hap7	4218107	4218108	rs9784858	26272072	Jiang X	2015-08-13	Rheumatology (Oxford)	An Immunochip-based interaction study of contrasting interaction effects with smoking in ACPA-positive versus ACPA-negative rheumatoid arthritis.	ACPA-positive rheumatoid arthritis (smoking interaction)	340 European ancestry never-smoker cases, 493 European ancestry ever-smoker cases, 746 European ancestry never-smoker controls, 994 European ancestry ever-smoker controls	187 European ancestry never-smoker cases, 421 European ancestry ever-smoker cases, 461 European ancestry never-smoker controls, 447 European ancestry ever-smoker controls	6p21.32	NR	rs9784858-?	NR	9E-12	(adjusted for HLA shared epitope)	1.4084507	[1.09-1.96]	Illumina [133648] (imputed)	N
617	chr6_ssto_hap7	4219634	4219635	rs2621322	30552173	Aterido A	2018-12-14	Ann Rheum Dis	Genetic variation at the glycosaminoglycan metabolism pathway contributes to the risk of psoriatic arthritis but not psoriasis.	Psoriatic arthritis	744 Spanish ancestry cases, 1,454 Spanish ancestry controls	1,430 cases, 1,417 controls	6p21.32	NR	rs2621322-?	NR	2E-8		5.6	[NR] z-score decrease	Illumina [1387382] (imputed)	N
617	chr6_ssto_hap7	4220322	4220323	rs151027268	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.32	NR	rs151027268-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
617	chr6_ssto_hap7	4224464	4224465	rs13501	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	TAP2	rs13501-A	NR	3E-9		0.0199818	[0.013-0.027] unit decrease	Affymetrix [323123] (imputed)	N
617	chr6_ssto_hap7	4225973	4225974	rs10484565	26272072	Jiang X	2015-08-13	Rheumatology (Oxford)	An Immunochip-based interaction study of contrasting interaction effects with smoking in ACPA-positive versus ACPA-negative rheumatoid arthritis.	ACPA-positive rheumatoid arthritis (smoking interaction)	340 European ancestry never-smoker cases, 493 European ancestry ever-smoker cases, 746 European ancestry never-smoker controls, 994 European ancestry ever-smoker controls	187 European ancestry never-smoker cases, 421 European ancestry ever-smoker cases, 461 European ancestry never-smoker controls, 447 European ancestry ever-smoker controls	6p21.32	NR	rs10484565-?	NR	7E-10	(adjusted for HLA shared epitope)	1.4285715	[1.09-2.13]	Illumina [133648] (imputed)	N
617	chr6_ssto_hap7	4226990	4226991	rs241453	32492067	Ruffieux H	2020-06-03	PLoS Comput Biol	A fully joint Bayesian quantitative trait locus mapping of human protein abundance in plasma.	Protein quantitative trait loci	376 European ancestry individuals	400 European ancestry individuals	6p21.32	NR	rs241453-?	NR	2E-6	(C4a)			Illumina [~ 4000000] (imputed)	N
617	chr6_ssto_hap7	4227889	4227890	rs241443	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	6p21.32	TAP2	rs241443-G	0.294917	2E-19		0.022992264	[0.018-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
617	chr6_ssto_hap7	4228547	4228548	rs2228391	26151496	Chen PL	2015-07-07	Nat Commun	Genetic determinants of antithyroid drug-induced agranulocytosis by human leukocyte antigen genotyping and genome-wide association study.	Thionamide-induced agranulocytosis in Graves' disease	21 East Asian ancestry cases with agranulocytosis, 662 East Asian ancestry cases without agranulocytosis	21 East Asian ancestry cases with agranulocytosis, 546 East Asian ancestry cases without agranulocytosis	6p21.32	HLA	rs2228391-C	0.108	4E-7	(trend)	3.32	[2.02-5.46] (allelic)	Affymetrix [522980]	N
617	chr6_ssto_hap7	4228650	4228651	rs241436	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6p21.32		rs241436-?	NR	7E-9		1.06498	[1.04-1.09]	NR [685523]	N
617	chr6_ssto_hap7	4228650	4228651	rs241436	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in lean individuals	up to 5,529 European ancestry male individuals, up to 9,753 European ancestry female individuals	NA	6p21.32	TAP2	rs241436-G	0.49	8E-6	(men)	0.089	[0.05-0.128] kg/m2 increase	Affymetrix, Illumina [at least 188473] (imputed)	N
617	chr6_ssto_hap7	4230619	4230620	rs60045856	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	6p21.32	NR	rs60045856-G	0.11004825178496	5E-12		0.0101193655	[0.0072-0.013] unit decrease	NR [NR]	N
617	chr6_ssto_hap7	4230619	4230620	rs60045856	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p21.32	NR	rs60045856-?	NR	3E-8		0.0829	[0.054-0.112] unit increase	Illumina [at least 560000] (imputed)	N
617	chr6_ssto_hap7	4233236	4233237	rs62397688	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	IgA nephropathy	1,180 East Asian ancestry cases, 899 East Asian ancestry controls	NA			rs62397688-A	NR	4E-6		0.58857	[0.34-0.84] unit decrease	Illumina [NR] (imputed)	N
617	chr6_ssto_hap7	4233581	4233582	rs4148872	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Diastolic blood pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	6p21.32	HLA	rs4148872-T	0.148057452	2E-7		0.2012	[0.13-0.28] unit increase	Affymetrix [~ 9800000] (imputed)	N
617	chr6_ssto_hap7	4234182	4234183	rs28724898	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p21.32	NR	rs28724898-?	NR	4E-13		0.1556	[0.11-0.2] unit decrease	Illumina [at least 560000] (imputed)	N
617	chr6_ssto_hap7	4234614	4234615	rs241429	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	TAP2	rs241429-A	NR	3E-8		0.0169285	[0.011-0.023] unit increase	Affymetrix [323123] (imputed)	N
617	chr6_ssto_hap7	4234844	4234845	rs241428	23028341	Yang X	2012-09-13	PLoS Genet	Genome-wide association study for serum complement C3 and C4 levels in healthy Chinese subjects.	Complement C3 and C4 levels	1,999 Han Chinese ancestry male individuals	1,496 Han Chinese ancestry male individuals	6p21.32	HLA-DQB	rs241428-G	0.08	9E-83	(Serum level of C4)	0.23	[0.21-0.25] g/L increase	Illumina [1940245] (imputed)	N
617	chr6_ssto_hap7	4234993	4234994	rs3819715	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (mother's age at death or mother's attained age)	up to 699,000 individuals	NA	6p21.32	NR	rs3819715-C		7E-6				Illumina [458525]	N
617	chr6_ssto_hap7	4235073	4235074	rs3819717	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (non-Lofgren's syndrome without extrapulmonary manifestations)	451 Swedish ancestry cases, 2,086 Swedish ancestry controls	NA	6p21.32	TAP2, PSMB9, HLA-DMB, HLA-DPB1	rs3819717-G	0.515	2E-6		1.434	[1.249-1.648]	Illumina [118177]	N
617	chr6_ssto_hap7	4235188	4235189	rs241427	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p21.32	TAP2	rs241427-G	0.797	4E-6		0.062	[0.035-0.089] unit decrease	Affymetrix, Illumina [7374092] (imputed)	N
617	chr6_ssto_hap7	4235344	4235345	rs3819720	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.32	NR	rs3819720-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
617	chr6_ssto_hap7	4235344	4235345	rs3819720	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs3819720-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
617	chr6_ssto_hap7	4235344	4235345	rs3819720	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p21.32	NR	rs3819720-?	NR	1E-12		0.1645	[0.12-0.21] unit decrease	Illumina [at least 560000] (imputed)	N
617	chr6_ssto_hap7	4235653	4235654	rs1871665	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.32		rs1871665-T	0.55322	1E-12		1.0307605	[1.02-1.04]	Affymetrix, Illumina [9851866] (imputed)	N
617	chr6_ssto_hap7	4235823	4235824	rs2239701	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	Composite immunoglobulin trait (IgA/IgG)	14,183 Icelandic ancestry individuals	2,146 Swedish ancestry individuals	6p21.32	TAP2	rs2239701-C	0.368	3E-10		0.08	NR SD units decrease	Illumina [21568490] (imputed)	N
617	chr6_ssto_hap7	4236081	4236082	rs2071466	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.32		rs2071466-C	0.704	1E-10				Affymetrix [10369434] (imputed)	N
617	chr6_ssto_hap7	4236081	4236082	rs2071466	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	6p21.32	TAP2	rs2071466-T		1E-24		0.024	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
617	chr6_ssto_hap7	4237161	4237162	rs4148870	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p21.32	TAP2	rs4148870-C	0.402	2E-6		0.053	[0.031-0.075] unit increase	Affymetrix, Illumina [7374092] (imputed)	N
617	chr6_ssto_hap7	4237323	4237324	rs74365910	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Ulcerative colitis (PheCode 555.2)	2,569 European ancestry cases, 453,779 European ancestry controls	NA	6p21.32		rs74365910-A	0.009189	9E-10		0.97	[0.66-1.28] unit increase	NR [11842647] (imputed)	N
617	chr6_ssto_hap7	4237323	4237324	rs74365910	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Treatment or medication use - levothyroxine sodium (UKB data field 20003_1141191044)	18,688 European ancestry cases, 437,588 European ancestry controls	NA	6p21.32		rs74365910-A	0.009068	2E-15		0.46	[0.35-0.57] unit increase	NR [11842647] (imputed)	N
617	chr6_ssto_hap7	4238262	4238263	rs114595701	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	6p21.32	NR	rs114595701-T	0.0925422107617213	2E-9		0.012502657	[0.0084-0.0166] unit decrease	NR [NR]	N
617	chr6_ssto_hap7	4238262	4238263	rs114595701	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	6p21.32	NR	rs114595701-T	0.0925422107617213	6E-9		0.013367118	[0.0089-0.0179] unit decrease	NR [NR]	N
617	chr6_ssto_hap7	4238262	4238263	rs114595701	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	6p21.32	NR	rs114595701-T	0.0925422107617213	2E-9		0.010604257	[0.0071-0.0141] unit decrease	NR [NR]	N
617	chr6_ssto_hap7	4239071	4239072	rs45506201	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	6p21.32	NR	rs45506201-A	0.0926176111889165	4E-9		0.015973978	[0.011-0.021] unit decrease	NR [NR]	N
617	chr6_ssto_hap7	4240620	4240621	rs9357155	21399633	Gharavi AG	2011-03-13	Nat Genet	Genome-wide association study identifies susceptibility loci for IgA nephropathy.	Nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls	712 Han Chinese ancestry cases, 748 Han Chinese ancestry controls, 1,238 European ancestry cases, 1,172 European ancestry controls	6p21.32	TAP2, TAP1, PSMB8, PSMB9	rs9357155-?	0.87 (EA)	2E-12		1.41	[NR]	Illumina [498322]	N
617	chr6_ssto_hap7	4242401	4242402	rs2071543	32912934	Li M	2020-09-10	J Am Soc Nephrol	Genome-Wide Meta-Analysis Identifies Three Novel Susceptibility Loci and Reveals Ethnic Heterogeneity of Genetic Susceptibility for IgA Nephropathy.	IgA nephropathy	2,628 Chinese ancestry cases, 11,563 Chinese ancestry controls	6,879 Han Chinese ancestry cases, 9,019 Han Chinese ancestry controls, 1,039 Italian ancestry cases, 1,289 Italian ancestry controls	6p21.32	PSMB8	rs2071543-G	0.8187836227622588	1E-6	(East Asian)	1.2505606	[1.14305470436016-1.36817776509077]	NR [3611808] (imputed)	N
617	chr6_ssto_hap7	4242401	4242402	rs2071543	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	6p21.32	PSMB9, TAP1, TAP2, PSMB8	rs2071543-G	0.80	2E-9	(East Asian)	1.41	[NR]	Illumina [> 1000000] (imputed)	N
617	chr6_ssto_hap7	4243300	4243301	rs2071463	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	6p21.32		rs2071463-?	NR	5E-8				Affymetrix [NR] (imputed)	N
617	chr6_ssto_hap7	4248800	4248801	rs113206908	32771030	Tangtanatakul P	2020-08-08	Arthritis Res Ther	Meta-analysis of genome-wide association study identifies FBN2 as a novel locus associated with systemic lupus erythematosus in Thai population.	Systemic lupus erythematosus	487 Thai cases, 1,606 Thai controls	405 Thai cases, 1,590 Thai controls	6p21.32	PSMB9	rs113206908-G	0.21	4E-7		1.4327	[NR]	Illumina [421909] (imputed)	N
617	chr6_ssto_hap7	4249448	4249449	rs2071538	32534018	Liu X	2020-06-10	Brain Behav Immun	Genetic factors underlying the bidirectional relationship between autoimmune and mental disorders - findings from a Danish population-based study.	Autoimmune traits	1,383 Danish ancestry cases, 62,656 Danish ancestry controls	NA	6p21.32	NR	rs2071538-A	0.24	8E-10		0.74	[0.67-0.82]	NR [7721839] (imputed)	N
617	chr6_ssto_hap7	4252219	4252220	rs2071536	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	6p21.32	PSMB9, TAP1	rs2071536-T	NR	5E-8		0.0260034	[0.017-0.035] unit decrease	Affymetrix [323123] (imputed)	N
617	chr6_ssto_hap7	4252219	4252220	rs2071536	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.32		rs2071536-T	0.111873	8E-10		1.0421276	[1.03-1.05]	Affymetrix, Illumina [9851866] (imputed)	N
617	chr6_ssto_hap7	4253016	4253017	rs17220241	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	6p21.32	HLA-Z, TAP2, PSMB9, PSMB8-AS1, XXbac-BPG246D15.9, TAP1, PSMB8	rs17220241-T	0.02156469	1E-21	(EA, Alpha-2-macroglobulin receptor-associated protein)	1.387	[1.11-1.66] unit increase	Affymetrix [509946]	N
617	chr6_ssto_hap7	4260782	4260783	rs7767288	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	6p21.32	PSMB9	rs7767288-A	0.4112	1E-11		0.02464776	[0.018-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
617	chr6_ssto_hap7	4263547	4263548	rs1055559	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	6p21.32	NR	rs1055559-?	NR	9E-7		0.079	[0.047-0.111] unit increase	Illumina [at least 560000] (imputed)	N
617	chr6_ssto_hap7	4263547	4263548	rs1055559	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	6p21.32	Intergenic	rs1055559-T	NR	4E-9		0.039613	[0.026-0.053] unit decrease	Illumina [13520550] (imputed)	N
617	chr6_ssto_hap7	4273742	4273743	rs6903433	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.32		rs6903433-C	0.87	7E-9				Affymetrix [10369434] (imputed)	N
617	chr6_ssto_hap7	4283380	4283381	rs2187689	22993228	Williams FM	2012-09-19	Ann Rheum Dis	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NA	6p21.32	PSMB9	rs2187689-C	0.08	3E-8		0.23	[0.15-0.31] unit increase	Affymetrix, Illumina [2552511] (imputed)	N
617	chr6_ssto_hap7	4283954	4283954	rs11459466	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	PPP1R2P1	rs11459466-GT	NR	4E-8		0.0204679	[0.013-0.028] unit increase	Affymetrix [323858] (imputed)	N
617	chr6_ssto_hap7	4284009	4284010	rs7767732	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.32		rs7767732-C	0.822	3E-21				Affymetrix [10369434] (imputed)	N
617	chr6_ssto_hap7	4285421	4285422	rs10046257	22993228	Williams FM	2012-09-19	Ann Rheum Dis	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NA	6p21.32	intergenic	rs10046257-A	0.10	3E-7		0.19	[0.12-0.26] unit increase	Affymetrix, Illumina [2552511] (imputed)	N
617	chr6_ssto_hap7	4286441	4286442	rs6457690	22993228	Williams FM	2012-09-19	Ann Rheum Dis	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NA	6p21.32	intergenic	rs6457690-A	0.10	9E-8		0.19	[0.12-0.26] unit increase	Affymetrix, Illumina [2552511] (imputed)	N
617	chr6_ssto_hap7	4287110	4287111	rs1029296	22993228	Williams FM	2012-09-19	Ann Rheum Dis	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NA	6p21.32	intergenic	rs1029296-C	0.10	9E-8		0.19	[0.12-0.26] unit increase	Affymetrix, Illumina [2552511] (imputed)	N
617	chr6_ssto_hap7	4287211	4287212	rs1029295	22993228	Williams FM	2012-09-19	Ann Rheum Dis	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NA	6p21.32	intergenic	rs1029295-C	0.10	5E-7		0.19	[0.12-0.26] unit increase	Affymetrix, Illumina [2552511] (imputed)	N
617	chr6_ssto_hap7	4287663	4287664	rs6936004	22993228	Williams FM	2012-09-19	Ann Rheum Dis	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NA	6p21.32	intergenic	rs6936004-C	0.10	1E-7		0.19	[0.12-0.26] unit increase	Affymetrix, Illumina [2552511] (imputed)	N
617	chr6_ssto_hap7	4288146	4288147	rs10214886	22993228	Williams FM	2012-09-19	Ann Rheum Dis	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NA	6p21.32	intergenic	rs10214886-A	0.10	2E-7		0.19	[0.12-0.26] unit increase	Affymetrix, Illumina [2552511] (imputed)	N
617	chr6_ssto_hap7	4288263	4288264	rs10214760	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	6p21.32	TAP1	rs10214760-?	NR	3E-6	(dimethylglycine)	0.3002602	[0.17-0.43] unit decrease	Affymetrix [at least 2500000] (imputed)	N
617	chr6_ssto_hap7	4290439	4290440	rs7744666	22993228	Williams FM	2012-09-19	Ann Rheum Dis	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NA	6p21.32	intergenic	rs7744666-C	0.10	6E-8		0.2	[0.13-0.27] unit increase	Affymetrix, Illumina [2552511] (imputed)	N
617	chr6_ssto_hap7	4290475	4290476	rs11969002	22993228	Williams FM	2012-09-19	Ann Rheum Dis	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NA	6p21.32	intergenic	rs11969002-A	0.10	6E-8		0.2	[0.13-0.27] unit increase	Affymetrix, Illumina [2552511] (imputed)	N
617	chr6_ssto_hap7	4291479	4291480	rs9469300	22993228	Williams FM	2012-09-19	Ann Rheum Dis	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NA	6p21.32	intergenic	rs9469300-A	0.10	1E-7		0.19	[0.12-0.26] unit increase	Affymetrix, Illumina [2552511] (imputed)	N
617	chr6_ssto_hap7	4293334	4293335	rs3749982	22993228	Williams FM	2012-09-19	Ann Rheum Dis	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NA	6p21.32	intergenic	rs3749982-A	0.10	1E-7		0.19	[0.12-0.26] unit increase	Affymetrix, Illumina [2552511] (imputed)	N
617	chr6_ssto_hap7	4296822	4296823	rs9276916	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	Systemic lupus erythematosus	1,639 East Asian ancestry cases, 2,410 East Asian ancestry controls	NA			rs9276916-G	NR	2E-8		0.2244	[0.15-0.3] unit increase	Illumina [NR] (imputed)	N
617	chr6_ssto_hap7	4300793	4300794	rs3101942	26297903	Fabbri C	2015-08-20	Prog Neuropsychopharmacol Biol Psychiatry	Genetics of long-term treatment outcome in bipolar disorder.	Manic episodes in bipolar disorder	706 European ancestry cases	NA	6p21.32	LOC100294145	rs3101942-?	NR	7E-6		1.733	[1.365-2.201]	Affymetrix [329806] (imputed)	N
617	chr6_ssto_hap7	4303654	4303655	rs574560492	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs574560492-?	NR	5E-8				Affymetrix [~ 8270000] (imputed)	N
617	chr6_ssto_hap7	4318989	4318990	rs117231810	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.32	Intergenic	rs117231810-?		4E-6		1.06	[1.03-1.08]	Illumina [7645193] (imputed)	N
617	chr6_ssto_hap7	4318989	4318990	rs117231810	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.32	Intergenic	rs117231810-?		1E-6		1.69	[1.37-2.09]	Illumina [7645193] (imputed)	N
617	chr6_ssto_hap7	4322087	4322088	rs194679	32534018	Liu X	2020-06-10	Brain Behav Immun	Genetic factors underlying the bidirectional relationship between autoimmune and mental disorders - findings from a Danish population-based study.	Autoimmune traits	1,383 Danish ancestry cases, 62,656 Danish ancestry controls	NA	6p21.32	NR	rs194679-T	0.047	1E-9		1.62	[1.4-1.87]	NR [7721839] (imputed)	N
618	chr6_ssto_hap7	4331133	4331135	rs57390839	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	6p21.32	PSMB9, HLA-DMB	rs57390839-?	NR	2E-15		0.303437	[0.23-0.38] unit increase	Illumina [at least 950000] (imputed)	N
618	chr6_ssto_hap7	4331133	4331135	rs57390839	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	6p21.32	NR	rs57390839-?	NR	1E-7		0.0931	[0.058-0.128] unit increase	Illumina [at least 560000] (imputed)	N
618	chr6_ssto_hap7	4334792	4334793	rs77318243	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	6p21.32	HLA-DMB	rs77318243-A	NR	3E-11		0.0352508	[0.025-0.046] unit decrease	Affymetrix [323858] (imputed)	N
618	chr6_ssto_hap7	4334792	4334793	rs77318243	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	6p21.32	HLA-DMB	rs77318243-A	NR	2E-10		0.0339654	[0.024-0.044] unit decrease	Affymetrix [127266] (imputed)	N
618	chr6_ssto_hap7	4338726	4338727	rs147725790	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6p21.32	NR	rs147725790-T	0.98229	2E-12		1.1804981	[1.13-1.23]	Affymetrix [15688218] (imputed)	N
618	chr6_ssto_hap7	4342083	4342084	rs116560929	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.32	NR	rs116560929-A	0.01045	3E-9	(FHL1)	0.008308	NR unit increase	Illumina [1671387] (imputed)	N
618	chr6_ssto_hap7	4342083	4342084	rs116560929	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.32	NR	rs116560929-A	0.01045	3E-10	(TAGLN)	0.4341	NR unit increase	Illumina [1671387] (imputed)	N
618	chr6_ssto_hap7	4342083	4342084	rs116560929	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.32	NR	rs116560929-A	0.01045	2E-8	(CNN2)	0.01914	NR unit increase	Illumina [1671387] (imputed)	N
618	chr6_ssto_hap7	4342569	4342570	rs2395296	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs2395296-A	NR	9E-8		1.089	[1.055-1.124]	Affymetrix [7846216] (imputed)	N
618	chr6_ssto_hap7	4344001	4344002	rs1480380	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome)	664 Swedish ancestry non-Lofgren's syndrome cases, 384 Swedish ancestry Lofgren's syndrome cases	413 German ancestry non-Lofgren's syndrome cases, 64 German ancestry Lofgren's syndrome cases	6p21.32	HLA-DMB, HLA-DMA	rs1480380-A	0.252	6E-23				Illumina [118177]	N
618	chr6_ssto_hap7	4344001	4344002	rs1480380	23453885	Smoller JW	2013-02-27	Lancet	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NA	6p21.32	NR	rs1480380-C	0.908	6E-7	(Modelling analysis)			NR [1252901] (imputed)	N
618	chr6_ssto_hap7	4344001	4344002	rs1480380	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.32	intergenic	rs1480380-T	0.0877	4E-39		3.05	[NR]	Illumina [242824]	N
618	chr6_ssto_hap7	4345481	4345482	rs73396800	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	6p21.32	NR	rs73396800-G	NR	4E-16		1.1904762	[NR]	Illumina [7158791] (imputed)	N
618	chr6_ssto_hap7	4346606	4346607	rs16871226	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	NR	rs16871226-G	0.0244821228239845	2E-6	(IGP67)	0.5182	[0.3-0.73] unit increase	Illumina [~ 2500000] (imputed)	N
618	chr6_ssto_hap7	4349214	4349215	rs12153970	26584805	Dorajoo R	2015-11-19	Genes Nutr	A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.	Plasma omega-3 polyunsaturated fatty acid levels (docosahexaenoic acid)	717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls	NA	6p21.32	NR	rs12153970-G	0.9496	4E-6		0.2241	[0.13-0.32] unit increase	Illumina [up to 1980188] (imputed)	N
618	chr6_ssto_hap7	4350333	4350334	rs146693865	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.32	NR	rs146693865-G	0.01045	3E-9	(FHL1)	0.008308	NR unit increase	Illumina [1671387] (imputed)	N
618	chr6_ssto_hap7	4350333	4350334	rs146693865	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.32	NR	rs146693865-G	0.01045	3E-10	(TAGLN)	0.4341	NR unit increase	Illumina [1671387] (imputed)	N
618	chr6_ssto_hap7	4350333	4350334	rs146693865	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.32	NR	rs146693865-G	0.01045	2E-8	(CNN2)	0.01914	NR unit increase	Illumina [1671387] (imputed)	N
618	chr6_ssto_hap7	4353217	4353218	rs9378127	30552173	Aterido A	2018-12-14	Ann Rheum Dis	Genetic variation at the glycosaminoglycan metabolism pathway contributes to the risk of psoriatic arthritis but not psoriasis.	Psoriatic arthritis	744 Spanish ancestry cases, 1,454 Spanish ancestry controls	1,430 cases, 1,417 controls	6p21.32	NR	rs9378127-?	NR	4E-7		5.07	[NR] z-score increase	Illumina [1387382] (imputed)	N
618	chr6_ssto_hap7	4355343	4355344	rs209474	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.32		rs209474-A	0.623	4E-15				Affymetrix [10369434] (imputed)	N
618	chr6_ssto_hap7	4355343	4355344	rs209474	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	6p21.32	HLA-DMA	rs209474-G	0.377123	1E-12		0.016615335	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
618	chr6_ssto_hap7	4355343	4355344	rs209474	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	6p21.32	HLA-DMA	rs209474-G	0.377106	6E-15		0.018046945	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
618	chr6_ssto_hap7	4355343	4355344	rs209474	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	6p21.32	NR	rs209474-A	0.624456	7E-9		0.0127924	[0.0085-0.0171] unit decrease	NR [NR]	N
618	chr6_ssto_hap7	4355343	4355344	rs209474	29121268	Amare AT	2017-11-09	JAMA Psychiatry	Association of Polygenic Score for Schizophrenia and HLA Antigen and Inflammation Genes With Response to Lithium in Bipolar Affective Disorder: A Genome-Wide Association Study.	Bipolar disorder lithium response (continuous) or schizophrenia	2,366 European ancestry lithium treated bipolar disorder cases, 220 Asian ancestry lithium treated bipolar disorder cases, 36,989 schizophrenia cases, controls (see Ripke et al 2014 PMID:25056061)	NA	6p21.32	HLA, DMA	rs209474-A		2E-8				NR [NR] (imputed)	N
618	chr6_ssto_hap7	4356458	4356459	rs580962	35215271	Almandil NB	2022-01-27	Pharmaceuticals (Basel)	Integration of Transcriptome and Exome Genotyping Identifies Significant Variants with Autism Spectrum Disorder.	Autism spectrum disorder	70 Arab ancestry cases, 132 Arab ancestry controls	NA	6p21.32	NA	rs580962-G	0.5852	6E-6		0.3383	[0.2105-0.5436]	Illumina [243345]	N
618	chr6_ssto_hap7	4359076	4359077	rs209476	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.32		rs209476-G	0.683	9E-16				Affymetrix [10369434] (imputed)	N
618	chr6_ssto_hap7	4359751	4359752	rs9276931	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	6p21.32	HLA-DMA	rs9276931-A	0.8852	5E-23		0.0292	[0.023-0.035] unit decrease	Affymetrix [18391927] (imputed)	N
618	chr6_ssto_hap7	4365915	4365916	rs115249787	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.32	NR	rs115249787-A	0.01045	3E-9	(FHL1)	0.008308	NR unit increase	Illumina [1671387] (imputed)	N
618	chr6_ssto_hap7	4365915	4365916	rs115249787	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.32	NR	rs115249787-A	0.01045	3E-10	(TAGLN)	0.4341	NR unit increase	Illumina [1671387] (imputed)	N
618	chr6_ssto_hap7	4365915	4365916	rs115249787	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.32	NR	rs115249787-A	0.01045	2E-8	(CNN2)	0.01914	NR unit increase	Illumina [1671387] (imputed)	N
618	chr6_ssto_hap7	4426472	4426475	rs3918142	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	6p21.32	NR	rs3918142-?	NR	4E-7		0.117	[0.072-0.162] unit decrease	Illumina [at least 560000] (imputed)	N
618	chr6_ssto_hap7	4426802	4426803	rs34530779	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.32	NR	rs34530779-A	0.01045	3E-9	(FHL1)	0.008308	NR unit increase	Illumina [1671387] (imputed)	N
618	chr6_ssto_hap7	4426802	4426803	rs34530779	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.32	NR	rs34530779-A	0.01045	3E-10	(TAGLN)	0.4341	NR unit increase	Illumina [1671387] (imputed)	N
618	chr6_ssto_hap7	4426802	4426803	rs34530779	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	6p21.32	NR	rs34530779-A	0.01045	2E-8	(CNN2)	0.01914	NR unit increase	Illumina [1671387] (imputed)	N
618	chr6_ssto_hap7	4427095	4427096	rs76088152	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	6p21.32	NR	rs76088152-?	NR	8E-9		0.2377	[0.16-0.32] unit decrease	Illumina [at least 560000] (imputed)	N
618	chr6_ssto_hap7	4429581	4429582	rs1049526	28008999	Ostrowski J	2016-12-23	Sci Rep	Genetic architecture differences between pediatric and adult-onset inflammatory bowel diseases in the Polish population.	Ulcerative colitis	269 Polish ancestry child cases, 259 Polish ancestry adult cases, 582 Polish ancestry controls	121 Polish ancestry child cases, 85 Polish ancestry adult cases, 352 Polish ancestry controls	6p21.32	BRD2	rs1049526-?		3E-7	(Adults)	2.697503	[1.87-3.90]	Illumina [2612357]	N
618	chr6_ssto_hap7	4429581	4429582	rs1049526	28008999	Ostrowski J	2016-12-23	Sci Rep	Genetic architecture differences between pediatric and adult-onset inflammatory bowel diseases in the Polish population.	Ulcerative colitis	269 Polish ancestry child cases, 259 Polish ancestry adult cases, 582 Polish ancestry controls	121 Polish ancestry child cases, 85 Polish ancestry adult cases, 352 Polish ancestry controls	6p21.32	BRD2	rs1049526-?		2E-8		2.3810558	[1.74-3.26]	Illumina [2612357]	N
618	chr6_ssto_hap7	4429581	4429582	rs1049526	28008999	Ostrowski J	2016-12-23	Sci Rep	Genetic architecture differences between pediatric and adult-onset inflammatory bowel diseases in the Polish population.	Inflammatory bowel disease	622 Polish ancestry child cases, 496 Polish ancestry adult cases, 582 Polish ancestry controls	192 Polish ancestry child cases, 185 Polish ancestry adult cases, 352 Polish ancestry controls	6p21.32	BRD2	rs1049526-?	NR	9E-10	(Adult)	2.659634	[1.93-3.66]	Illumina [2612357]	N
618	chr6_ssto_hap7	4429581	4429582	rs1049526	28008999	Ostrowski J	2016-12-23	Sci Rep	Genetic architecture differences between pediatric and adult-onset inflammatory bowel diseases in the Polish population.	Inflammatory bowel disease	622 Polish ancestry child cases, 496 Polish ancestry adult cases, 582 Polish ancestry controls	192 Polish ancestry child cases, 185 Polish ancestry adult cases, 352 Polish ancestry controls	6p21.32	BRD2	rs1049526-?	NR	5E-11		2.434453	[1.83-3.24]	Illumina [2612357]	N
618	chr6_ssto_hap7	4429581	4429582	rs1049526	28008999	Ostrowski J	2016-12-23	Sci Rep	Genetic architecture differences between pediatric and adult-onset inflammatory bowel diseases in the Polish population.	Inflammatory bowel disease	622 Polish ancestry child cases, 496 Polish ancestry adult cases, 582 Polish ancestry controls	192 Polish ancestry child cases, 185 Polish ancestry adult cases, 352 Polish ancestry controls	6p21.32	BRD2	rs1049526-?	NR	2E-8	(Children)	2.3504539	[1.73-3.19]	Illumina [2612357]	N
618	chr6_ssto_hap7	4429581	4429582	rs1049526	28008999	Ostrowski J	2016-12-23	Sci Rep	Genetic architecture differences between pediatric and adult-onset inflammatory bowel diseases in the Polish population.	Crohn's disease	353 Polish ancestry child cases, 237 Polish ancestry adult cases, 582 Polish ancestry controls	71 Polish ancestry child cases, 100 Polish ancestry adult cases, 352 Polish ancestry controls	6p21.32	BRD2	rs1049526-?	NR	5E-9		2.4428785	[1.79-3.33]	Illumina [2612357]	N
618	chr6_ssto_hap7	4429581	4429582	rs1049526	28008999	Ostrowski J	2016-12-23	Sci Rep	Genetic architecture differences between pediatric and adult-onset inflammatory bowel diseases in the Polish population.	Crohn's disease	353 Polish ancestry child cases, 237 Polish ancestry adult cases, 582 Polish ancestry controls	71 Polish ancestry child cases, 100 Polish ancestry adult cases, 352 Polish ancestry controls	6p21.32	BRD2	rs1049526-?	NR	3E-7	(Children)	2.4273632	[1.72-3.42]	Illumina [2612357]	N
618	chr6_ssto_hap7	4429581	4429582	rs1049526	28008999	Ostrowski J	2016-12-23	Sci Rep	Genetic architecture differences between pediatric and adult-onset inflammatory bowel diseases in the Polish population.	Crohn's disease	353 Polish ancestry child cases, 237 Polish ancestry adult cases, 582 Polish ancestry controls	71 Polish ancestry child cases, 100 Polish ancestry adult cases, 352 Polish ancestry controls	6p21.32	BRD2	rs1049526-?	NR	3E-6	(Adults)	2.530363	[1.73-3.70]	Illumina [2612357]	N
618	chr6_ssto_hap7	4434057	4434058	rs3097645	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	NR	rs3097645-C	0.87438328769575	7E-6	(IGP59)	0.2057	[0.12-0.3] unit increase	Illumina [~ 2500000] (imputed)	N
618	chr6_ssto_hap7	4434057	4434058	rs3097645	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	NR	rs3097645-C	0.874270331235955	2E-6	(IGP42)	0.2151	[0.13-0.3] unit decrease	Illumina [~ 2500000] (imputed)	N
618	chr6_ssto_hap7	4434057	4434058	rs3097645	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	NR	rs3097645-C	0.874157767431399	5E-6	(IGP2)	0.2092	[0.12-0.3] unit decrease	Illumina [~ 2500000] (imputed)	N
618	chr6_ssto_hap7	4434057	4434058	rs3097645	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	NR	rs3097645-C	0.873857556055831	6E-6	(IGP16)	0.2057	[0.12-0.29] unit decrease	Illumina [~ 2500000] (imputed)	N
618	chr6_ssto_hap7	4434057	4434058	rs3097645	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	NR	rs3097645-C	0.873550828800713	6E-6	(IGP61)	0.206	[0.12-0.3] unit increase	Illumina [~ 2500000] (imputed)	N
618	chr6_ssto_hap7	4434057	4434058	rs3097645	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	NR	rs3097645-C	0.873514573726542	3E-6	(IGP58)	0.2131	[0.12-0.3] unit increase	Illumina [~ 2500000] (imputed)	N
618	chr6_ssto_hap7	4434057	4434058	rs3097645	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	6p21.32	NR	rs3097645-C	0.872971129118433	6E-7	(IGP65)	0.2253	[0.14-0.31] unit increase	Illumina [~ 2500000] (imputed)	N
618	chr6_ssto_hap7	4440788	4440789	rs3130600	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	6p21.32	NR	rs3130600-?	NR	2E-6		0.079	[0.046-0.112] unit increase	Illumina [at least 560000] (imputed)	N
618	chr6_ssto_hap7	4441255	4441256	rs140545087	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	6p21.32	NR	rs140545087-?	NR	3E-10				Affymetrix [~ 8270000] (imputed)	N
618	chr6_ssto_hap7	4441255	4441256	rs140545087	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs140545087-?	NR	5E-9				Affymetrix [~ 8270000] (imputed)	N
618	chr6_ssto_hap7	4442122	4442123	rs9500927	21804548	Hirota T	2011-07-31	Nat Genet	Genome-wide association study identifies three new susceptibility loci for adult asthma in the Japanese population.	Asthma	1,532 Japanese ancestry cases, 3,304 Japanese ancestry controls	5,639 Japanese ancestry cases, 24,608 Japanese ancestry controls	6p21.32	HLA-DOA	rs9500927-T	0.26	4E-9		1.13	[1.09-1.18]	Illumina [458847]	N
618	chr6_ssto_hap7	4442382	4442383	rs172275	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	334,944 European ancestry, NR ancestry individuals	NA	6p21.32		rs172275-?	NR	5E-8				Affymetrix [NR] (imputed)	N
618	chr6_ssto_hap7	4443644	4443645	rs11757367	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.32		rs11757367-G	0.832	3E-15				Affymetrix [10369434] (imputed)	N
618	chr6_ssto_hap7	4447445	4447446	rs35520555	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.32		rs35520555-A	0.886	3E-8				Affymetrix [10369434] (imputed)	N
618	chr6_ssto_hap7	4453119	4453120	rs3128935	24024966	Teumer A	2013-08-14	J Clin Periodontol	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (CDC/AAP)	up to 3,915 European ancestry individuals	NA	6p21.32	HLA-DOA	rs3128935-T	0.97	9E-6	(Age 20-60 years)	2.28	[1.59-3.28]	Affymetrix, Illumina [up to 17585496] (imputed)	N
618	chr6_ssto_hap7	4454314	4454315	rs9276975	25758996	Pirastu N	2015-03-11	Eur J Hum Genet	Genome-wide association analysis on five isolated populations identifies variants of the HLA-DOA gene associated with white wine liking.	White wine liking	381 Carlantino (founder/genetic isolated) individuals, 744 Friuli Venezia Giulia (founder/genetic isolated) individuals, 1,115 Val Borbera (founder/genetic isolated) individuals	1,261 Erasmus Rucphen (founder/genetic isolated) individuals, 335 Silk Road individuals	6p21.32	HLA-DOA	rs9276975-T	0.15	2E-8		0.0539	[NR] unit increase	Illumina [9969492] (imputed)	N
618	chr6_ssto_hap7	4454314	4454315	rs9276975	25758996	Pirastu N	2015-03-11	Eur J Hum Genet	Genome-wide association analysis on five isolated populations identifies variants of the HLA-DOA gene associated with white wine liking.	Red wine liking	398 Carlantino (founder/genetic isolated) individuals, 751 Friuli Venezia Giulia (founder/genetic isolated) individuals, 1,122 Val Borbera (founder/genetic isolated) individuals	1,246 Erasmus Rucphen (founder/genetic isolated) individuals, 353 Silk Road individuals	6p21.32	HLA-DOA	rs9276975-T	0.15	8E-6		0.0419	[NR] unit increase	Illumina [6967159] (imputed)	N
618	chr6_ssto_hap7	4455648	4455649	rs378352	25802187	Jiang DK	2015-04-28	Hepatology	Genetic variants in five novel loci including CFB and CD40 predispose to chronic hepatitis B.	Chronic hepatitis B infection	2,514 Chinese ancestry cases, 1,130 Chinese ancestry controls	6,600 Chinese ancestry cases, 8,127 Chinese ancestry controls	6p21.32	HLA-DOA	rs378352-T	0.39	1E-23		1.26	[1.20-1.31]	Illumina [3680900] (imputed)	N
618	chr6_ssto_hap7	4455728	4455729	rs399604	22139419	Gieger C	2011-11-30	Nature	New gene functions in megakaryopoiesis and platelet formation.	Platelet count	38,891 European ancestry individuals, 1,661 Val Borbera (founder/genetic isolate) individuals, 521 Carlantino (founder/genetic isolate) individuals, 1,198 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,213 South Tyrolean (founder/genetic isolate) individuals, 890 Sorbian (founder/genetic isolate) individuals, 4,292 Sardinian (founder/genetic isolate) individuals	Up to 16,949 European ancestry individuals, 854 Cliento (founder/genetic isolate) individuals, 1,035 Talana (founder/genetic isolate) individuals	6p21.32	HLA-DOA	rs399604-C	NR	1E-10		2.346	[1.63-3.06] 10^9/l increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
618	chr6_ssto_hap7	4456225	4456226	rs2267647	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.32		rs2267647-A	0.331	4E-13				Affymetrix [10369434] (imputed)	N
619	chr6_ssto_hap7	4458134	4458135	rs381218	32534018	Liu X	2020-06-10	Brain Behav Immun	Genetic factors underlying the bidirectional relationship between autoimmune and mental disorders - findings from a Danish population-based study.	Autoimmune traits	1,383 Danish ancestry cases, 62,656 Danish ancestry controls	NA	6p21.32	NR	rs381218-T	0.29	1E-10		1.31	[1.21-1.42]	NR [7721839] (imputed)	N
619	chr6_ssto_hap7	4464463	4464464	rs11964504	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	6p21.32	NR	rs11964504-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
619	chr6_ssto_hap7	4469419	4469420	rs9296068	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	6p21.32	HLA-DOA	rs9296068-T	0.65	1E-8		1.05	[1.03-1.07]	Illumina [20370935] (imputed)	N
619	chr6_ssto_hap7	4470246	4470247	rs56042736	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	133,321 East Asian ancestry individuals	NA	6p21.32		rs56042736-G	0.049558	3E-17		0.0728205	[0.056-0.09] unit decrease	Illumina [13477433] (imputed)	N
619	chr6_ssto_hap7	4486177	4486178	rs150480104	32141793	Garman L	2020-03-06	Ocul Immunol Inflamm	Genome-Wide Association Study of Ocular Sarcoidosis Confirms HLA Associations and Implicates Barrier Function and Autoimmunity in African Americans.	Ocular sarcoidosis	260 African American cases, 1,551 African American controls	NA	6p21.32	NR	rs150480104-A	NR	8E-6		3.855	[2.13-6.98]	Illumina [13976150] (imputed)	N
619	chr6_ssto_hap7	4490066	4490067	rs78331658	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Measles	38,219 European ancestry cases, 47,279 European ancestry controls	NA	6p21.32	NR	rs78331658-?	NR	1E-7		1.7845	[1.12-2.45] unit increase	Illumina [at least 560000] (imputed)	N
619	chr6_ssto_hap7	4499494	4499495	rs9296069	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.32		rs9296069-C	0.749	5E-33				Affymetrix [10369434] (imputed)	N
619	chr6_ssto_hap7	4500889	4500890	rs3130582	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	6p21.32	HLA-DPA1	rs3130582-T	0.202102	3E-8	(-24 ms)	0.0369729	[0.023-0.051] unit increase	Affymetrix [10000000] (imputed)	N
619	chr6_ssto_hap7	4503687	4503688	rs9277176	29534301	Nishida N	2018-03-13	Hepatology	Key HLA-DRB1-DQB1 haplotypes and role of the BTNL2 gene for response to a hepatitis B vaccine.	Response to hepatitis B vaccine	107 Japanese ancestry low responder individuals, 351 Japanese ancestry intermediate responder individuals, 735 Japanese ancestry high responder individuals	NA	6p21.32	HLA-DPA1	rs9277176-?		1E-7		0.219	unit decrease	Affymetrix [427664]	N
619	chr6_ssto_hap7	4506491	4506492	rs6457709	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	6p21.32		rs6457709-?	NR	2E-6		0.94528	[0.92-0.97]	NR [685523]	N
619	chr6_ssto_hap7	4506491	4506492	rs6457709	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Hepatitis B	1,425 European ancestry cases, 218,180 European ancestry controls	NA	6p21.32	NR	rs6457709-?	NR	8E-6		0.1819	[0.1-0.26] unit increase	Illumina [at least 560000] (imputed)	N
619	chr6_ssto_hap7	4506648	4506649	rs422544	32771030	Tangtanatakul P	2020-08-08	Arthritis Res Ther	Meta-analysis of genome-wide association study identifies FBN2 as a novel locus associated with systemic lupus erythematosus in Thai population.	Systemic lupus erythematosus	487 Thai cases, 1,606 Thai controls	405 Thai cases, 1,590 Thai controls	6p21.32	HLA-DOA, HLA-DPA1	rs422544-C	0.15	5E-8		0.6232	[NR]	Illumina [421909] (imputed)	N
619	chr6_ssto_hap7	4509141	4509142	rs9277332	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Keratinocyte cancer (MTAG)	at least 18,538 European ancestry cases, at least 340,302 European ancestry controls	NA	6p21.32	HLA-DPA1	rs9277332-G	0.744531	2E-9		1.06	[1.04-1.08]	Affymetrix [7600000] (imputed)	N
619	chr6_ssto_hap7	4509220	4509221	rs588997	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	6p21.32	NR	rs588997-A	NR	4E-6	(female)	0.1185	[0.068-0.169] unit decrease	Illumina [11133794] (imputed)	N
619	chr6_ssto_hap7	4509940	4509941	rs6457710	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	6p21.32	HLA-DPA1	rs6457710-G	0.268971	2E-11		0.017609773	[0.012-0.023] unit increase	Affymetrix [93095623] (imputed)	N
619	chr6_ssto_hap7	4512115	4512116	rs35449774	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.32	NR	rs35449774-?	NR	3E-11				Affymetrix [~ 8270000] (imputed)	N
619	chr6_ssto_hap7	4512115	4512116	rs35449774	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs35449774-?	NR	2E-16				Affymetrix [~ 8270000] (imputed)	N
619	chr6_ssto_hap7	4512115	4512116	rs35449774	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	6p21.32	HLA-DPA1, HLA-DPB1, HLA-DPB2	rs35449774-T	0.142188	7E-11		1.0714098	[1.05-1.09]	Affymetrix [8274727] (imputed)	N
619	chr6_ssto_hap7	4513368	4513369	rs1042901	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	6p21.32	HLA-DPA1	rs1042901-C	0.119144	1E-14		0.029356208	[0.022-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
619	chr6_ssto_hap7	4513525	4513526	rs3077	33736632	Zeng Z	2021-03-18	BMC Med Genomics	Genome-wide association study identifies new loci associated with risk of HBV infection and disease progression.	Persistent hepatitis B virus infection	587 Chinese ancestry persistent cases, 275 Chinese ancestry clearance controls	NA	6p21.32	HLA-DPA1	rs3077-A	0.4145	7E-9		0.5007	NR	Affymetrix [607153]	N
619	chr6_ssto_hap7	4513525	4513526	rs3077	25802187	Jiang DK	2015-04-28	Hepatology	Genetic variants in five novel loci including CFB and CD40 predispose to chronic hepatitis B.	Chronic hepatitis B infection	2,514 Chinese ancestry cases, 1,130 Chinese ancestry controls	6,600 Chinese ancestry cases, 8,127 Chinese ancestry controls	6p21.32	HLA-DPA1	rs3077-A	0.66	1E-53		1.45	[1.39-1.52]	Illumina [3680900] (imputed)	N
619	chr6_ssto_hap7	4513525	4513526	rs3077	23760081	Kim YJ	2013-06-10	Hum Mol Genet	A genome-wide association study identified new variants associated with the risk of chronic hepatitis B.	Chronic hepatitis B infection	400 Korean ancestry cases, 1,000 Korean ancestry controls	971 Korean ancestry cases, 1,938 Korean ancestry controls	6p21.32	HLA-DP	rs3077-?	NR	5E-39		1.89	[1.69-2.08]	Illumina [719265]	N
619	chr6_ssto_hap7	4513525	4513526	rs3077	22737229	Nishida N	2012-06-21	PLoS One	Genome-wide association study confirming association of HLA-DP with protection against chronic hepatitis B and viral clearance in Japanese and Korean.	Hepatitis B (viral clearance)	181 East Asian ancestry HBV carriers, 184 East Asian ancestry controls, 185 East Asian ancestry spontaneously HBV-resolved individuals	Up to 8,045 East Asian ancestry HBV carriers, up to 9,003 East Asian ancestry controls, up to 3,995 East Asian ancestry spontaneously HBV-resolved individuals	6p21.32	HLA-DPA1	rs3077-C	0.60	4E-45	(Protective effects against CHB)	1.82	[1.67-1.96]	Affymetrix [597789]	N
619	chr6_ssto_hap7	4513525	4513526	rs3077	22737229	Nishida N	2012-06-21	PLoS One	Genome-wide association study confirming association of HLA-DP with protection against chronic hepatitis B and viral clearance in Japanese and Korean.	Hepatitis B (viral clearance)	181 East Asian ancestry HBV carriers, 184 East Asian ancestry controls, 185 East Asian ancestry spontaneously HBV-resolved individuals	Up to 8,045 East Asian ancestry HBV carriers, up to 9,003 East Asian ancestry controls, up to 3,995 East Asian ancestry spontaneously HBV-resolved individuals	6p21.32	HLA-DPA1	rs3077-C	0.60	1E-9	(Clearance of HBV)	1.67	[1.43-2.0]	Affymetrix [597789]	N
619	chr6_ssto_hap7	4513525	4513526	rs3077	21750111	Mbarek H	2011-07-12	Hum Mol Genet	A genome-wide association study of chronic hepatitis B identified novel risk locus in a Japanese population.	Hepatitis B	458 Japanese ancestry cases, 2,056 Japanese ancestry controls	2,209 Japanese ancestry cases, 4,440 Japanese ancestry controls	6p21.32	HLA-DPA1	rs3077-G	0.60	2E-61		1.87	[1.73-2.01]	Illumina [423627]	N
619	chr6_ssto_hap7	4513923	4513924	rs79341334	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	6p21.32	NR	rs79341334-?	NR	4E-9	(MIC-A)	1.11932	[0.75-1.49] unit increase	Illumina [11901634] (imputed)	N
619	chr6_ssto_hap7	4514213	4514214	rs73739621	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (multivariate analysis)	477,968 European ancestry individuals	NA	6p21.32	HLA, DPA1	rs73739621-C	0.096	2E-10		0.05	[0.034-0.066] unit decrease	NR [NR] (imputed)	N
619	chr6_ssto_hap7	4514213	4514214	rs73739621	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (age of onset)	117,130 European ancestry individuals	NA	6p21.32	HLA-DPA1	rs73739621-C	0.096	4E-11		0.051	[0.035-0.067] unit decrease	NR [7647814] (imputed)	N
619	chr6_ssto_hap7	4514317	4514318	rs2301227	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	6p21.32	NR	rs2301227-A	NR	5E-6	(female)	0.1072	[0.061-0.153] unit decrease	Illumina [11133794] (imputed)	N
619	chr6_ssto_hap7	4514327	4514328	rs111789468	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	6p21.32	HLA-DPA1	rs111789468-?	NR	2E-13		1.092	[1.07-1.12]	Affymetrix [9000000] (imputed)	N
619	chr6_ssto_hap7	4514327	4514328	rs111789468	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	6p21.32	HLA-DPA1	rs111789468-T	NR	4E-6		1.082	[1.05-1.12]	Affymetrix [9000000] (imputed)	N
619	chr6_ssto_hap7	4515080	4515081	rs34596699	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	Systemic lupus erythematosus	1,639 East Asian ancestry cases, 2,410 East Asian ancestry controls	NA			rs34596699-T	NR	2E-8		0.2177	[0.14-0.29] unit increase	Illumina [NR] (imputed)	N
619	chr6_ssto_hap7	4515818	4515819	rs74292032	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	6p21.32	HLA-DPA1	rs74292032-G	0.014974	1E-15		0.07435001	[0.056-0.093] unit decrease	Affymetrix [93095623] (imputed)	N
619	chr6_ssto_hap7	4520128	4520129	rs9277341	28029757	Merkel PA	2016-12-28	Arthritis Rheumatol	Identification of Functional and Expression Polymorphisms Associated With Risk for Antineutrophil Cytoplasmic Autoantibody-Associated Vasculitis.	Antineutrophil cytoplasmic antibody-associated vasculitis	1,015 European ancestry granulomatosis with polyangiitis cases, 206 European ancestry microscopic polyangiitis cases, 3,258 European ancestry controls.	541 European ancestry granulomatosis with polyangiitis cases, 30 European ancestry microscopic polyangiitis cases, 1,465 European ancestry controls.	6p21.32	HLA-DPA1	rs9277341-T	0.70	6E-71		2.44	2.21-2.69	Affymetrix [at least 333035] (imputed)	N
619	chr6_ssto_hap7	4520307	4520308	rs9277342	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	6p21.32	HLA-DPA1	rs9277342-T	0.21017	8E-10		0.017251292	[0.012-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
619	chr6_ssto_hap7	4520601	4520602	rs4345439	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Graves' disease	2,809 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	6p21.32		rs4345439-T	0.47048229	2E-67		0.48648387	[0.43-0.54] unit increase	Illumina [13429311] (imputed)	N
619	chr6_ssto_hap7	4521576	4521577	rs9357156	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Graves' disease	1,678 European ancestry cases, 456,942 European ancestry controls, 2,809 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	6p21.32		rs9357156-C	NR	1E-68		0.4396	[0.39-0.49] unit increase	Affymetrix, Illumina [25841587] (imputed)	N
619	chr6_ssto_hap7	4522237	4522238	rs2856830	30527956	Rhodes CJ	2018-12-05	Lancet Respir Med	Genetic determinants of risk in pulmonary arterial hypertension: international genome-wide association studies and meta-analysis.	Pulmonary arterial hypertension	2,085 European ancestry cases, 9,659 European ancestry controls	NA	6p21.32	HLA-DPA1, HLA-DPB1	rs2856830-C	0.12	8E-20		1.56	[1.42-1.71]	Illumina [~ 7727590] (imputed)	N
619	chr6_ssto_hap7	4523383	4523384	rs987870	21814517	Noguchi E	2011-07-21	PLoS Genet	Genome-wide association study identifies HLA-DP as a susceptibility gene for pediatric asthma in Asian populations.	Asthma	938 Japanese ancestry cases, 2,376 Japanese ancestry controls	1653 East Asian ancestry cases, 1453 East Asian ancestry controls	6p21.32	HLA, DPB1	rs987870-C	0.14	2E-10		1.4	[1.26-1.55]	Illumina [450326]	N
619	chr6_ssto_hap7	4523383	4523384	rs987870	21779181	Gorlova O	2011-07-14	PLoS Genet	Identification of novel genetic markers associated with clinical phenotypes of systemic sclerosis through a genome-wide association strategy.	Systemic sclerosis	2,296 European ancestry cases, 5,172 European ancestry controls	3,175 European ancestry cases, 4,210 European ancestry controls	6p21.32	HLA-DPA1, HLA-DPB1	rs987870-?	0.15	2E-20	(ATA positive)	2.09	[1.78-2.45]	Illumina [NR] (imputed)	N
619	chr6_ssto_hap7	4524518	4524519	rs115910061	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs115910061-T	0.059	5E-12		0.721	[0.63-0.81]	Illumina [11270530] (imputed)	N
619	chr6_ssto_hap7	4525490	4525491	rs6415133	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	6p21.32	NR	rs6415133-?	NR	6E-16		0.0994	[0.075-0.124] unit decrease	Illumina [at least 560000] (imputed)	N
619	chr6_ssto_hap7	4525758	4525759	rs2213309	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	6p21.32	NR	rs2213309-T	0.55	8E-7	(female)	0.1155	[0.07-0.161] unit increase	Illumina [11133794] (imputed)	N
619	chr6_ssto_hap7	4526003	4526004	rs2856816	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.32		rs2856816-T	0.908	5E-23				Affymetrix [10369434] (imputed)	N
619	chr6_ssto_hap7	4526003	4526004	rs2856816	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	6p21.32	HLA-DPB1, HLA-DPA1	rs2856816-C	0.092	2E-17		0.0523189	[0.04-0.064] unit decrease	Affymetrix [~ 2500000] (imputed)	N
619	chr6_ssto_hap7	4526003	4526004	rs2856816	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	6p21.32	HLA-DPB1, HLA-DPA1	rs2856816-C	0.092	7E-15		0.04810228	[0.036-0.06] unit decrease	Affymetrix [~ 2500000] (imputed)	N
619	chr6_ssto_hap7	4526201	4526202	rs7750458	27153935	Zhang CE	2016-05-06	J Dermatol	Variation at HLA-DPB1 is associated with dermatomyositis in Chinese population.	Dermatomyositis	127 Han Chinese ancestry case, 1,566 Han Chinese ancestry controls	NA	6p21.32	HLA-DPB1, HLA-DMB	rs7750458-A	0.09	1E-9		2.5	[1.80-3.44]	Illumina [812602]	N
619	chr6_ssto_hap7	4526202	4526203	rs56934772	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	6p21.32	HLA-DPB1	rs56934772-T	NR	5E-8		0.259632	[0.17-0.35] unit increase	Illumina [at least 950000] (imputed)	N
619	chr6_ssto_hap7	4526469	4526470	rs3135022	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	6p21.32	NR	rs3135022-A	NR	3E-6	(female)	0.1098	[0.064-0.156] unit decrease	Illumina [11133794] (imputed)	N
619	chr6_ssto_hap7	4527229	4527230	rs2021408	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	6p21.32		rs2021408-T	0.833	1E-17				Affymetrix [10369434] (imputed)	N
619	chr6_ssto_hap7	4527229	4527230	rs2021408	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	6p21.32		rs2021408-C	0.840557	3E-7		1.0296161	[1.02-1.04]	Affymetrix, Illumina [9851866] (imputed)	N
619	chr6_ssto_hap7	4527245	4527246	rs2856821	34450027	Boer CG	2021-08-24	Cell	Deciphering osteoarthritis genetics across 826,690 individuals from 9 populations.	Osteoarthritis of the hip or knee	88,842 European ancestry cases, 397,208 European ancestry controls, 899 Japanese ancestry cases, 3,396 Japanese ancestry controls	NA	6p21.32		rs2856821-T	0.7896	6E-9		1.0471791	[1.031089783-1.063519526]	Affymetrix, Illumina [NR] (imputed)	N
619	chr6_ssto_hap7	4527245	4527246	rs2856821	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Osteoarthritis	77,052 European ancestry cases, 378,169 European ancestry controls	NA	6p21.32	NR	rs2856821-T	0.79	1E-9		1.04	[1.03-1.06]	Affymetrix, Illumina [up to 17000000] (imputed)	N
619	chr6_ssto_hap7	4527255	4527256	rs3097670	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	6p21.32	HLA-DPA1	rs3097670-G	0.88	8E-12		1.064	[1.05-1.08]	Affymetrix, Illumina [8307659] (imputed)	N
619	chr6_ssto_hap7	4527534	4527535	rs1431403	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs1431403-T	0.39	1E-22		0.848	[0.81-0.88]	Illumina [11270530] (imputed)	N
619	chr6_ssto_hap7	4527969	4527970	rs3135024	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Aspartate aminotransferase levels	386,570 British ancestry individuals, 10,617 Asian or Asian British individuals, 7,426 Black or Black British individuals, 2,321 Chinese ancestry individuals	NA	6p21.32	HLA-DPB1	rs3135024-?	NR	8E-24		0.0034	[0.0028-0.004] unit increase	Affymetrix [21347608] (imputed)	N
619	chr6_ssto_hap7	4527969	4527970	rs3135024	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Alanine aminotransferase levels	387,859 British ancestry individuals, 10,635 Asian or Asian British individuals, 7,468 Black or Black British individuals, 2,338 Chinese ancestry individuals	NA	6p21.32	HLA-DPB1	rs3135024-?	NR	3E-10		0.0034	[0.0024-0.0044] unit increase	Affymetrix [21347608] (imputed)	N
619	chr6_ssto_hap7	4527969	4527970	rs3135024	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	HLA-DPA1, HLA-DPB1, RPL32P1	rs3135024-C	NR	2E-8		0.0184048	[0.012-0.025] unit decrease	Affymetrix [321016] (imputed)	N
619	chr6_ssto_hap7	4528115	4528116	rs3097671	34197731	Li Q	2021-06-23	Am J Hum Genet	Whole-exome sequencing reveals common and rare variants in immunologic and neurological genes implicated in achalasia.	Idiopathic achalasia	280 Chinese Han ancestry cases, 1,121 Chinese Han ancestry controls	NA	6p21.32		rs3097671-C	0.102	3E-7		2.29	[1.67-3.15]	Illumina [476650] (imputed)	N
619	chr6_ssto_hap7	4528605	4528606	rs3130169	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs3130169-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
619	chr6_ssto_hap7	4528963	4528964	rs12722013	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	HLA-DPB1	rs12722013-C	0.049	1E-15	(C-C motif chemokine 21, CCL21.2516.57.3)	0.45	[0.33-0.57] unit increase	Affymetrix [10572788] (imputed)	N
619	chr6_ssto_hap7	4528969	4528970	rs1126511	34197731	Li Q	2021-06-23	Am J Hum Genet	Whole-exome sequencing reveals common and rare variants in immunologic and neurological genes implicated in achalasia.	Idiopathic achalasia	100 Chinese Han ancestry cases, 313 Chinese Han ancestry controls	230 Chinese Han ancestry cases, 1,760 Chinese Han ancestry controls	6p21.32		rs1126511-T	0.181	2E-9		1.83		Illumina [192329]	N
619	chr6_ssto_hap7	4529041	4529042	rs9277348	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hypothyroidism	1,114 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	6p21.32		rs9277348-C	0.428105722	8E-16		0.3692923	[0.28-0.46] unit increase	Illumina [13429045] (imputed)	N
619	chr6_ssto_hap7	4529109	4529110	rs1042133	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	6p21.32	HLA-DPB1	rs1042133-C	0.15836	8E-32		0.036145743	[0.03-0.042] unit increase	Affymetrix [93095623] (imputed)	N
619	chr6_ssto_hap7	4529109	4529110	rs1042133	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	6p21.32	HLA-DPB1	rs1042133-C	0.1567	3E-12		0.03465061	[0.025-0.044] unit increase	Affymetrix [~ 2500000] (imputed)	N
619	chr6_ssto_hap7	4529164	4529165	rs1042151	32004448	Savage SA	2020-01-30	Am J Hum Genet	Genome-wide Association Study Identifies HLA-DPB1 as a Significant Risk Factor for Severe Aplastic Anemia.	Severe aplastic anemia	359 European ancestry cases, 1,396 European ancestry controls	175 European ancestry cases, 1,059 European ancestry controls	6p21.32	HLA-DPB1	rs1042151-?	NR	2E-13		1.75	[1.50-2.03]	Illumina [688067]	N
619	chr6_ssto_hap7	4529164	4529165	rs1042151	23180272	Park BL	2012-11-21	Hum Genet	Genome-wide association study of aspirin-exacerbated respiratory disease in a Korean population.	Aspirin exacerbated respiratory disease in asthmatics	117 Korean ancestry cases, 685 Korean ancestry controls	142 Korean ancestry cases, 996 Korean ancestry controls	6p21.32	HLA-DPB1	rs1042151-G	0.083	5E-7		2.4	[1.68-3.42]	Illumina [430486]	N
619	chr6_ssto_hap7	4529192	4529192	rs141530233	28029757	Merkel PA	2016-12-28	Arthritis Rheumatol	Identification of Functional and Expression Polymorphisms Associated With Risk for Antineutrophil Cytoplasmic Autoantibody-Associated Vasculitis.	Antineutrophil cytoplasmic antibody-associated vasculitis	1,015 European ancestry granulomatosis with polyangiitis cases, 206 European ancestry microscopic polyangiitis cases, 3,258 European ancestry controls.	541 European ancestry granulomatosis with polyangiitis cases, 30 European ancestry microscopic polyangiitis cases, 1,465 European ancestry controls.	6p21.32	HLA-DPB1	rs141530233-?	0.7	1E-89		2.99	[2.69-3.33]	Affymetrix [at least 333035] (imputed)	N
619	chr6_ssto_hap7	4529197	4529198	rs9277356	31243853	Chung S	2019-06-27	J Viral Hepat	GWAS identifying HLA-DPB1 gene variants associated with responsiveness to hepatitis B virus vaccination in Koreans: Independent association of HLA-DPB1*04:02 possessing rs1042169 G - rs9277355 C - rs9277356 A.	Response to hepatitis B vaccine	1,760 Korean ancestry non-responder adults, 5,107 Korean ancestry responder adults	2,327 Korean ancestry adults, 49 Korean ancestry non-responder infants, 234 Korean ancestry responder infants	6p21.32	HLA-DPB1	rs9277356-A	0.4716	7E-31	(Adults)	1.474164	[1.38-1.574]	Affymetrix [345072]	N
619	chr6_ssto_hap7	4529424	4529425	rs7770370	32573827	Huang YH	2020-06-23	Aliment Pharmacol Ther	Large-scale genome-wide association study identifies HLA class II variants associated with chronic HBV infection: a study from Taiwan Biobank.	Chronic hepatitis B infection	1,810 East Asian cases, 9,002 East Asian seropositive controls	648 East Asian cases, 3,190 East Asian seropositive controls	6p21.32	NR	rs7770370-G	0.5739	3E-35		1.6393442	[1.52-1.79]	Affymetrix [583383]	N
619	chr6_ssto_hap7	4529777	4529778	rs2856827	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip	15 Asian ancestry cases, 13 European ancestry cases, 15 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	6p21.32	NR	rs2856827-?	NR	4E-6		3.87	[2.88-5.2]	Illumina [539000] (imputed)	N
619	chr6_ssto_hap7	4530166	4530167	rs9501251	28425483	Qiu F	2017-04-20	Nat Commun	A genome-wide association study identifies six novel risk loci for primary biliary cholangitis.	Primary biliary cholangitis	1,122 Han Chinese ancestry cases, 4,036 Han Chinese ancestry controls	907 Han Chinese ancestry cases, 2,127 Han Chinese ancestry controls	6p21.32	HLA-DPB1	rs9501251-G	0.044	2E-22		2.01	[1.76-2.32]	Illumina [776516]	N
619	chr6_ssto_hap7	4530229	4530230	rs7772134	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.32		rs7772134-G	0.899	5E-45				Affymetrix [10369434] (imputed)	N
619	chr6_ssto_hap7	4530782	4530783	rs9277378	27595289	Goyal RK	2016-09-05	Bone Marrow Transplant	Novel HLA-DP region susceptibility loci associated with severe acute GvHD.	Acute graft versus host disease in bone marrow transplantation (recipient effect)	291 European ancestry recipients with acute graft versus host disease, 288 European ancestry recipients without acute graft versus host disease	NA	6p21.32	HLA-DPB1	rs9277378-?		2E-9				Affymetrix [905761]	N
619	chr6_ssto_hap7	4530782	4530783	rs9277378	27470079	Li Z	2016-07-25	Lancet Oncol	Genetic risk of extranodal natural killer T-cell lymphoma: a genome-wide association study.	Extranodal natural killer T-cell lymphoma (nasal type)	189 East Asian ancestry cases, 957 East Asian ancestry controls	514 East Asian ancestry cases, 5,822 East Asian ancestry controls	6p21.32	HLA-DPB1	rs9277378-A	0.29	4E-19		1.84	[1.61-2.11]	Illumina [477644] (imputed)	N
619	chr6_ssto_hap7	4532400	4532400	rs142975055	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic hepatitis B infection	145 European ancestry cases, 351,740 European ancestry controls, 2,234 East Asian ancestry cases, 169,588 East Asian ancestry controls	NA	6p21.32		rs142975055-GAAATA	NR	1E-44		0.4385	[0.38-0.5] unit increase	Affymetrix, Illumina [20457334] (imputed)	N
619	chr6_ssto_hap7	4533855	4533856	rs9277464	29534301	Nishida N	2018-03-13	Hepatology	Key HLA-DRB1-DQB1 haplotypes and role of the BTNL2 gene for response to a hepatitis B vaccine.	Response to hepatitis B vaccine	107 Japanese ancestry low responder individuals, 351 Japanese ancestry intermediate responder individuals, 735 Japanese ancestry high responder individuals	NA	6p21.32	HLA-DPB1	rs9277464-?		7E-11		0.175	unit decrease	Affymetrix [427664]	N
619	chr6_ssto_hap7	4535364	4535365	rs9277535	27244555	Li Y	2016-05-31	Nat Commun	Genome-wide association study identifies 8p21.3 associated with persistent hepatitis B virus infection among Chinese.	Persistent hepatitis B virus infection	1,251 Chinese ancestry persistently infected cases, 1,057 Chinese ancestry spontaneously recovered controls	3,905 Chinese ancestry persistently infected cases, 3,356 Chinese ancestry spontaneously recovered controls	6p21.32	HLA-DPB1	rs9277535-A		4E-6		1.45	[1.23-1.69]	Affymetrix, Illumina [up to 4494311] (imputed)	N
619	chr6_ssto_hap7	4535364	4535365	rs9277535	25802187	Jiang DK	2015-04-28	Hepatology	Genetic variants in five novel loci including CFB and CD40 predispose to chronic hepatitis B.	Chronic hepatitis B infection	2,514 Chinese ancestry cases, 1,130 Chinese ancestry controls	6,600 Chinese ancestry cases, 8,127 Chinese ancestry controls	6p21.32	HLA-DPB1	rs9277535-A	0.58	1E-70		1.52	[1.45-1.59]	Illumina [3680900] (imputed)	N
619	chr6_ssto_hap7	4535364	4535365	rs9277535	24940741	Chang SW	2014-06-18	PLoS One	A genome-wide association study on chronic HBV infection and its clinical progression in male Han-Taiwanese.	Chronic hepatitis B infection	321 Chinese ancestry cases, 304 Chinese ancestry controls	1,302 Chinese ancestry cases, 761 Chinese ancestry controls	6p21.32	HLA-DPB1	rs9277535-G	0.251	5E-14		1.59	[1.41-1.79]	Illumina [456262]	N
619	chr6_ssto_hap7	4535364	4535365	rs9277535	23760081	Kim YJ	2013-06-10	Hum Mol Genet	A genome-wide association study identified new variants associated with the risk of chronic hepatitis B.	Chronic hepatitis B infection	400 Korean ancestry cases, 1,000 Korean ancestry controls	971 Korean ancestry cases, 1,938 Korean ancestry controls	6p21.32	HLA-DP	rs9277535-?	NR	4E-40		1.89	[1.72-2.08]	Illumina [719265]	N
619	chr6_ssto_hap7	4535364	4535365	rs9277535	22737229	Nishida N	2012-06-21	PLoS One	Genome-wide association study confirming association of HLA-DP with protection against chronic hepatitis B and viral clearance in Japanese and Korean.	Hepatitis B (viral clearance)	181 East Asian ancestry HBV carriers, 184 East Asian ancestry controls, 185 East Asian ancestry spontaneously HBV-resolved individuals	Up to 8,045 East Asian ancestry HBV carriers, up to 9,003 East Asian ancestry controls, up to 3,995 East Asian ancestry spontaneously HBV-resolved individuals	6p21.32	HLA-DPB1	rs9277535-G	0.57	2E-21	(Protective effects against CHB)	1.64	[1.47-1.82]	Affymetrix [597789]	N
619	chr6_ssto_hap7	4535364	4535365	rs9277535	22737229	Nishida N	2012-06-21	PLoS One	Genome-wide association study confirming association of HLA-DP with protection against chronic hepatitis B and viral clearance in Japanese and Korean.	Hepatitis B (viral clearance)	181 East Asian ancestry HBV carriers, 184 East Asian ancestry controls, 185 East Asian ancestry spontaneously HBV-resolved individuals	Up to 8,045 East Asian ancestry HBV carriers, up to 9,003 East Asian ancestry controls, up to 3,995 East Asian ancestry spontaneously HBV-resolved individuals	6p21.32	HLA-DPB1	rs9277535-G	0.57	2E-17	(Clearance of HBV)	1.52	[1.37-1.67]	Affymetrix [597789]	N
619	chr6_ssto_hap7	4535364	4535365	rs9277535	21764829	Png E	2011-07-15	Hum Mol Genet	A genome-wide association study of hepatitis B vaccine response in an Indonesian population reveals multiple independent risk variants in the HLA region.	Hepatitis B vaccine response	1,683 Indonesian ancestry individuals	1,931 Indonesian ancestry individuals	6p21.32	HLA-DPB1	rs9277535-?	NR	3E-12		1.39	[1.23-1.59]	Illumina [455508]	N
619	chr6_ssto_hap7	4535364	4535365	rs9277535	21750111	Mbarek H	2011-07-12	Hum Mol Genet	A genome-wide association study of chronic hepatitis B identified novel risk locus in a Japanese population.	Hepatitis B	458 Japanese ancestry cases, 2,056 Japanese ancestry controls	2,209 Japanese ancestry cases, 4,440 Japanese ancestry controls	6p21.32	HLA-DPB1	rs9277535-G	0.57	3E-54		1.77	[1.65-1.91]	Illumina [423627]	N
619	chr6_ssto_hap7	4535364	4535365	rs9277535	19349983	Kamatani Y	2009-04-06	Nat Genet	A genome-wide association study identifies variants in the HLA-DP locus associated with chronic hepatitis B in Asians.	Hepatitis B	179 Japanese ancestry cases, 934 Japanese ancestry controls	1,599 Japanese ancestry cases, 2,821 Japanese ancestry controls, 308 Thai ancestry cases, 546 Thai ancestry controls	6p21.32	HLA-DPB1	rs9277535-G		6E-39		1.75	[1.61-1.92]	Illumina [499544]	N
619	chr6_ssto_hap7	4535601	4535602	rs9501255	28077804	Ben-Avraham D	2017-01-10	Aging (Albany NY)	The complex genetics of gait speed: genome-wide meta-analysis approach.	Gait speed in old age	31,478 European ancestry older adults	2,588 European ancestry older adults	6p21.32	HLA-DPB1	rs9501255-T	NR	3E-7		0.0244	[0.015-0.034] m/sec increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
619	chr6_ssto_hap7	4535750	4535751	rs9277542	33736632	Zeng Z	2021-03-18	BMC Med Genomics	Genome-wide association study identifies new loci associated with risk of HBV infection and disease progression.	Persistent hepatitis B virus infection	587 Chinese ancestry persistent cases, 275 Chinese ancestry clearance controls	NA	6p21.32	HLA-DPB1	rs9277542-T	0.5347	2E-8		0.5353	NR	Affymetrix [607153]	N
619	chr6_ssto_hap7	4535750	4535751	rs9277542	33736632	Zeng Z	2021-03-18	BMC Med Genomics	Genome-wide association study identifies new loci associated with risk of HBV infection and disease progression.	Hepatitis B	460 Chinese ancestry cases, 169 Chinese ancestry controls	NA	6p21.32	HLA-DPB1	rs9277542-?	NR	2E-9				Affymetrix [607153]	N
619	chr6_ssto_hap7	4535922	4535923	rs9277549	29534301	Nishida N	2018-03-13	Hepatology	Key HLA-DRB1-DQB1 haplotypes and role of the BTNL2 gene for response to a hepatitis B vaccine.	Response to hepatitis B vaccine	107 Japanese ancestry low responder individuals, 351 Japanese ancestry intermediate responder individuals, 735 Japanese ancestry high responder individuals	NA	6p21.32	HLA-DPB2	rs9277549-?		6E-11		0.175	unit decrease	Affymetrix [427664]	N
619	chr6_ssto_hap7	4536004	4536005	rs9277552	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Osteoarthritis of the hip or knee	39,427 European ancestry cases, 378,169 European ancestry controls	NA	6p21.32	NR	rs9277552-C	0.79	2E-10		1.06	[1.04-1.08]	Affymetrix, Illumina [up to 17000000] (imputed)	N
619	chr6_ssto_hap7	4536004	4536005	rs9277552	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Knee osteoarthritis	24,955 European ancestry cases, 378,169 European ancestry controls	NA	6p21.32	NR	rs9277552-C	0.79	2E-8		1.07	[1.04-1.09]	Affymetrix, Illumina [up to 17000000] (imputed)	N
619	chr6_ssto_hap7	4536041	4536042	rs9277554	28076899	Taylor KE	2017-01-11	Arthritis Rheumatol	Genome-Wide Association Analysis Reveals Genetic Heterogeneity of Sjogren's Syndrome According to Ancestry.	Sjogren's syndrome	460 Asian ancestry cases, 1125 Asian ancestry controls	NA	6p21.32	HLA-DPB1	rs9277554-?		3E-7		1.65	[1.37-2.00]	Illumina [302688]	N
619	chr6_ssto_hap7	4536041	4536042	rs9277554	23740775	Xie G	2013-09-01	Arthritis Rheum	Association of granulomatosis with polyangiitis (Wegener's) with HLA-DPB1*04 and SEMA6A gene variants: evidence from genome-wide analysis.	Wegener's granulomatosis	459 European ancestry cases, 1,503 European ancestry controls	291 European ancestry cases, 317 European ancestry controls	6p21.32	HLA-DOA, HSD17B8, RING1, COL11A2, RXRB, HLA-DPB1*04, HLA-DPB1, HLA-DPB2	rs9277554-C	0.708	2E-50		4.17	[3.33-5.00]	Illumina [287802]	N
619	chr6_ssto_hap7	4536108	4536109	rs9277555	24586183	Medici M	2014-02-27	PLoS Genet	Identification of novel genetic Loci associated with thyroid peroxidase antibodies and clinical thyroid disease.	Thyroid peroxidase antibody levels	12,353 European ancestry individuals	8,159 European ancestry individuals	6p21.32	NR	rs9277555-G		6E-7		0.0199	[0.010-0.030] unit increase	Affymetrix, Illumina [up to 3437411] (imputed)	N
619	chr6_ssto_hap7	4536168	4536171	rs148969528	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	6p21.32	HLA-DPB1, HLA-DPA2	rs148969528-A	0.178395	3E-15		0.022868847	[0.017-0.029] unit increase	Affymetrix [93095623] (imputed)	N
619	chr6_ssto_hap7	4536168	4536171	rs148969528	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	6p21.32	HLA-DPB1, HLA-DPA2	rs148969528-A	0.178377	1E-17		0.024778191	[0.019-0.03] unit increase	Affymetrix [93095623] (imputed)	N
619	chr6_ssto_hap7	4536600	4536601	rs3128967	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	6p21.32	NR	rs3128967-T	0.90959	2E-12		1.0504202	[1.04-1.06]	Affymetrix [15688218] (imputed)	N
619	chr6_ssto_hap7	4537265	4537266	rs9277562	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic hepatitis B infection	2,234 East Asian ancestry cases, 169,588 East Asian ancestry controls	NA	6p21.32		rs9277562-T	0.575524651	5E-45		0.44033504	[0.38-0.5] unit increase	Illumina [13428705] (imputed)	N
619	chr6_ssto_hap7	4539377	4539378	rs2179920	27501781	Shiraishi K	2016-08-09	Nat Commun	Association of variations in HLA class II and other loci with susceptibility to EGFR-mutated lung adenocarcinoma.	EGFR mutation-positive lung adenocarcinoma	663 Japanese ancestry cases, 4,367 Japanese ancestry controls	2,510 Japanese ancestry cases, 10,791 Japanese ancestry controls	6p21.32	HLA-DPB1	rs2179920-A	0.165	5E-17		1.36	[1.27-1.47]	Illumina [NR] (imputed)	N
619	chr6_ssto_hap7	4540621	4540622	rs2281388	31050781	Zhao SX	2019-05-03	JAMA Netw Open	Assessment of Molecular Subtypes in Thyrotoxic Periodic Paralysis and Graves Disease Among Chinese Han Adults: A Population-Based Genome-Wide Association Study.	Thyrotoxic hypokalemic periodic paralysis and Graves disease	171 Han Chinese ancestry cases, 2,160 Han Chinese ancestry controls	362 Han Chinese ancestry cases, 1,089 Han Chinese ancestry controls	6p21.32	HLA-DPB1, COL11A2	rs2281388-?	0.33	2E-18		1.74	[1.54-1.98]	Illumina [2752055] (imputed)	N
619	chr6_ssto_hap7	4540621	4540622	rs2281388	21841780	Chu X	2011-08-14	Nat Genet	A genome-wide association study identifies two new risk loci for Graves' disease.	Graves' disease	1,468 Chinese ancestry cases, 1,490 Chinese ancestry controls	3,994 Chinese ancestry cases, 3,510 Chinese ancestry controls	6p21.32	HLA, DPB1	rs2281388-T	0.32	2E-65		1.64	[1.55-1.74]	Illumina [486049]	N
619	chr6_ssto_hap7	4541325	4541326	rs6928954	20639394	Kang TW	2010-07-16	Hum Mol Genet	Genome-wide association of serum bilirubin levels in Korean population.	Bilirubin levels	8,841 Korean ancestry individuals	1,096 Korean ancestry individuals	6p21.32	intergenic	rs6928954-?	0.023	1E-6		0.075	[NR] bilirubin level increase	Affymetrix [1227049] (imputed)	N
619	chr6_ssto_hap7	4541373	4541374	rs2295119	32912934	Li M	2020-09-10	J Am Soc Nephrol	Genome-Wide Meta-Analysis Identifies Three Novel Susceptibility Loci and Reveals Ethnic Heterogeneity of Genetic Susceptibility for IgA Nephropathy.	IgA nephropathy	2,628 Chinese ancestry cases, 11,563 Chinese ancestry controls	6,879 Han Chinese ancestry cases, 9,019 Han Chinese ancestry controls, 1,039 Italian ancestry cases, 1,289 Italian ancestry controls	6p21.32	DPA1.DPB2	rs2295119-T	0.22960427086396265	3E-14	(East Asian)	1.3605813	[1.25664462393162-1.47311444258073]	NR [3611808] (imputed)	N
619	chr6_ssto_hap7	4541373	4541374	rs2295119	29784950	Sawai H	2018-05-21	Sci Rep	Genome-wide association study identified new susceptible genetic variants in HLA class I region for hepatitis B virus-related hepatocellular carcinoma.	Hepatocellular carcinoma in hepatitis B infection	473 Japanese ancestry chronic hepatitis and hepatocellular carcinoma cases, 516 Japanese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma	153 Japanese ancestry chronic hepatitis and hepatocellular carcinoma cases, 614 Japanese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma, 94 Chinese ancestry chronic hepatitis and hepatocellular carcinoma cases, 187 Chinese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma, 185 Thai ancestry chronic hepatitis and hepatocellular carcinoma cases, 198 Thai ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma	6p21.32	HLA	rs2295119-?	NR	6E-7	(Japanese)	1.59	[1.32-1.89]	Affymetrix [447830]	N
619	chr6_ssto_hap7	4541373	4541374	rs2295119	29784950	Sawai H	2018-05-21	Sci Rep	Genome-wide association study identified new susceptible genetic variants in HLA class I region for hepatitis B virus-related hepatocellular carcinoma.	Hepatocellular carcinoma in hepatitis B infection	473 Japanese ancestry chronic hepatitis and hepatocellular carcinoma cases, 516 Japanese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma	153 Japanese ancestry chronic hepatitis and hepatocellular carcinoma cases, 614 Japanese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma, 94 Chinese ancestry chronic hepatitis and hepatocellular carcinoma cases, 187 Chinese ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma, 185 Thai ancestry chronic hepatitis and hepatocellular carcinoma cases, 198 Thai ancestry asymptomatic carriers or chronic hepatitis cases without hepatocellular carcinoma	6p21.32	HLA	rs2295119-?	NR	5E-7		1.5873016	[1.32-1.89] Japanese	Affymetrix [447830]	N
619	chr6_ssto_hap7	4541732	4541733	rs3130189	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	6p21.32		rs3130189-T	0.829	9E-13				Affymetrix [10369434] (imputed)	N
619	chr6_ssto_hap7	4550070	4550071	rs3117245	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs3117245-C	NR	8E-9		1.174	[1.112-1.24]	Affymetrix [7846216] (imputed)	N
619	chr6_ssto_hap7	4550396	4550397	rs3117242	22808956	Lyons PA	2012-07-19	N Engl J Med	Genetically distinct subsets within ANCA-associated vasculitis.	Antineutrophil cytoplasmic antibody-associated vasculitis	914 European ancestry cases, 5,259 European ancestry controls	1,454 European ancestry cases, 1,666 European ancestry controls	6p21.32	HLA-DP, COL11A2	rs3117242-?	NR	1E-71		3.67	[NR]	Affymetrix [NR]	N
619	chr6_ssto_hap7	4551799	4551800	rs3128923	33736632	Zeng Z	2021-03-18	BMC Med Genomics	Genome-wide association study identifies new loci associated with risk of HBV infection and disease progression.	Hepatitis B	460 Chinese ancestry cases, 169 Chinese ancestry controls	NA	6p21.32	HLA-DPA2	rs3128923-?	NR	2E-6				Affymetrix [607153]	N
619	chr6_ssto_hap7	4552649	4552650	rs4282438	24097066	Li Y	2013-10-06	Nat Genet	A genome-wide association study in Han Chinese identifies a susceptibility locus for primary Sjogren's syndrome at 7q11.23.	Sjogren's syndrome	542 Han Chinese ancestry cases, 1,050 Han Chinese ancestry controls	1,303 Han Chinese ancestry cases, 2,727 Han Chinese ancestry controls	6p21.32	COL11A2, HLA-DPB1, HLA-DPA1	rs4282438-G	0.3546	9E-25		1.58	[1.45-1.72]	Affymetrix [556134]	N
619	chr6_ssto_hap7	4552649	4552650	rs4282438	23817570	Shi Y	2013-06-30	Nat Genet	A genome-wide association study identifies two new cervical cancer susceptibility loci at 4q12 and 17q12.	Cervical cancer	Up to 1,364 Han Chinese ancestry cases, up to 3,028 Han Chinese ancestry controls	4,167 Han Chinese ancestry cases, 7,196 Han Chinese ancestry controls	6p21.32	HLA-DPB2	rs4282438-?	0.56	5E-27	(Stringently Matched)	1.35	[1.27-1.41]	Affymetrix [563339]	N
619	chr6_ssto_hap7	4552717	4552718	rs2064479	31044621	Rimpela JM	2019-05-02	Blood Press	Genome-wide association study of white-coat effect in hypertensive patients.	White coat effect (clinic diastolic blood pressure minus ambulatory diastolic blood pressure)	206 Finnish ancestry individuals	NA	6p21.32	HLA-DPB1	rs2064479-A	0.26	5E-6		2.4	[1.42-3.38] unit increase	Illumina [629414]	N
619	chr6_ssto_hap7	4555920	4555921	rs910320	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.32	Intergenic	rs910320-?		8E-8		1.05	[1.03-1.07]	Illumina [7645193] (imputed)	N
619	chr6_ssto_hap7	4556143	4556144	rs3128930	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	6p21.32	HLA-DPA1	rs3128930-C	0.683	7E-6		0.053	[0.029-0.077] unit increase	Affymetrix, Illumina [7374092] (imputed)	N
619	chr6_ssto_hap7	4556567	4556568	rs872956	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	6p21.32	Intergenic	rs872956-?		8E-8		1.58	[1.34-1.86]	Illumina [7645193] (imputed)	N
619	chr6_ssto_hap7	4556629	4556632	rs57746686	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cervical cancer	967 East Asian ancestry cases, 60,614 East Asian ancestry controls	NA	6p21.32		rs57746686-G	0.159023897	1E-9		0.38955024	[0.26-0.52] unit increase	Illumina [13381745] (imputed)	N
619	chr6_ssto_hap7	4558640	4558641	rs3130218	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cervical cancer	6,563 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs3130218-A	NR	5E-9		1.16171	NR	Affymetrix [7846216] (imputed)	N
619	chr6_ssto_hap7	4562744	4562745	rs9277630	34246321	Fukunaga K	2021-07-10	Am J Hum Genet	Genome-wide association study reveals an association between the HLA-DPB1<sup>*</sup>02:01:02 allele and wheat-dependent exercise-induced anaphylaxis.	Wheat-dependent exercise-induced anaphylaxis	77 Japanese ancestry cases, 924 Japanese ancestry controls	91 Japanese ancestry cases, 435 Japanese ancestry controls	6p21.32		rs9277630-A	0.26	1E-11		3.53	[2.45-5.09]	Illumina [3891096] (imputed)	N
619	chr6_ssto_hap7	4562785	4562786	rs733208	24722205	Kwak SH	2014-04-17	Hum Mol Genet	A genome-wide association study on thyroid function and anti-thyroid peroxidase antibodies in Koreans.	Thyroid peroxidase antibody positivity	377 Korean ancestry cases, 3,019 Korean ancestry anti-TPO controls	108 Korean ancestry cases, 734 Korean ancestry controls	6p21.32	HLA-DPB2	rs733208-A	0.30	4E-7		1.435	[1.30-1.57]	Affymetrix [1418709] (imputed)	N
619	chr6_ssto_hap7	4562989	4562990	rs9277636	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	6p21.32	NR	rs9277636-G	0.153	3E-8		0.0105227	[0.0068-0.0143] unit increase	NR [~ 9732723] (imputed)	N
619	chr6_ssto_hap7	4565906	4565907	rs139394070	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	6p21.32		rs139394070-?	NR	5E-8				Affymetrix [NR] (imputed)	N
619	chr6_ssto_hap7	4566735	4566736	rs3117035	20031603	Marroni F	2009-08-01	Circ Cardiovasc Genet	A genome-wide association scan of RR and QT interval duration in 3 European genetically isolated populations: the EUROSPAN project.	RR interval (heart rate)	2,325 European ancestry individuals	NA	6p21.32	intergenic	rs3117035-A	0.48	1E-6		0.14	[0.08-0.20] unit decrease	Illumina [~ 318327]	N
619	chr6_ssto_hap7	4566934	4566935	rs1883414	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	6p21.32	HLA-DPB2, HLA-DPB1, HLA-DPA1	rs1883414-G	0.68	2E-11		1.22	[NR]	Illumina [> 1000000] (imputed)	N
619	chr6_ssto_hap7	4566934	4566935	rs1883414	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	6p21.32	HLA-DPB1, HLA-DPA1, HLA-DPB2	rs1883414-G	0.68	5E-7	(EA)	1.2	[NR]	Illumina [> 1000000] (imputed)	N
619	chr6_ssto_hap7	4566934	4566935	rs1883414	21399633	Gharavi AG	2011-03-13	Nat Genet	Genome-wide association study identifies susceptibility loci for IgA nephropathy.	Nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls	712 Han Chinese ancestry cases, 748 Han Chinese ancestry controls, 1,238 European ancestry cases, 1,172 European ancestry controls	6p21.32	HLA-DPA1, HLA-DPB1, HLA-DPB2	rs1883414-?	0.67 (EA)	5E-9		1.28	[NR]	Illumina [498322]	N
619	chr6_ssto_hap7	4568581	4568582	rs115311892	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein COL11A2	5,366 Icelandic ancestry individuals	NA	6p21.32		rs115311892-T	0.01149	1E-16		0.748771	[0.57-0.93] unit increase	Illumina [7506463] (imputed)	N
619	chr6_ssto_hap7	4570123	4570124	rs3117027	23482656	Chen D	2013-03-12	J Natl Cancer Inst	Genome-wide association study of susceptibility loci for cervical cancer.	Cervical cancer	1,034 European ancestry cases, 3,948 European ancestry controls	1,140 European ancestry cases, 1,058 European ancestry controls	6p21.32	HLA-DPB2	rs3117027-?	NR	1E-7		1.25	[1.15-1.36]	Illumina [632668]	N
619	chr6_ssto_hap7	4576871	4576872	rs117232140	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	6p21.32	HLA-DPB2	rs117232140-?	NR	7E-9		0.096564196	[0.064-0.129] unit decrease	Illumina [27896057] (imputed)	N
619	chr6_ssto_hap7	4576872	4576873	rs3117006	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma and attention deficit hyperactivity disorder	46,802 European ancestry asthma cases, 19,099 European ancestry attention deficit hyperactivity disorder cases, 381,675 European ancestry controls	NA	6p21.32	HLA-DPB2	rs3117006-?	NR	3E-8				Affymetrix [up to 8274727] (imputed)	N
619	chr6_ssto_hap7	4576872	4576873	rs3117006	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma (childhood onset)	9,676 European ancestry cases, 347,481 European ancestry controls	NA	6p21.32	HLA-DPB2	rs3117006-?	NR	2E-6		0.0766984	[0.044-0.109] unit increase	Affymetrix [8274727] (imputed)	N
619	chr6_ssto_hap7	4577587	4577588	rs3129270	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	6p21.32		rs3129270-T	NR	1E-7		1.1494253	[1.09-1.21]	Affymetrix [7846216] (imputed)	N
619	chr6_ssto_hap7	4577778	4577779	rs3129269	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	6p21.32	HLA-DPB2, HLA-DPB1, HLA-DPA1	rs3129269-C	NR	5E-7	(East Asian)	1.29	[NR]	Illumina [> 1000000] (imputed)	N
619	chr6_ssto_hap7	4578215	4578216	rs3116995	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	6p21.32	NR	rs3116995-?	NR	6E-9				Affymetrix [~ 8270000] (imputed)	N
619	chr6_ssto_hap7	4578508	4578509	rs6901830	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	6p21.32	HCG24	rs6901830-G	0.847121	1E-19		1.0788485	[1.0613158162383-1.09667081279089]	NR [9572556] (imputed)	N
619	chr6_ssto_hap7	4578733	4578734	rs9277768	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hashimoto thyroiditis	537 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	6p21.32		rs9277768-T	0.335380575	4E-10		0.4089919	[0.28-0.54] unit increase	Illumina [13428945] (imputed)	N
619	chr6_ssto_hap7	4578760	4578761	rs9277769	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.32		rs9277769-C	0.368	4E-12				Affymetrix [10369434] (imputed)	N
619	chr6_ssto_hap7	4578961	4578962	rs3116994	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	6p21.32		rs3116994-G	0.461	2E-9				Affymetrix [10369434] (imputed)	N
619	chr6_ssto_hap7	4578961	4578962	rs3116994	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	6p21.32	NR	rs3116994-A	0.548	6E-12	(Collagen alpha-2(XI) chain, COL11A2.11278.4.3)	0.17	[0.13-0.21] unit increase	Affymetrix [10572788] (imputed)	N
619	chr6_ssto_hap7	4579702	4579703	rs3116989	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma onset (childhood vs adult)	13,962 European ancestry childhood onset cases, 14,873 European ancestry adult onset cases	31,002 European ancestry childhood onset cases, 16,297 European ancestry adult onset cases	6p21.32	COL11A2, HLA-DPB2	rs3116989-G	0.867	4E-6		1.073	[1.04-1.1]	Affymetrix [9000000] (imputed)	N
619	chr6_ssto_hap7	4579702	4579703	rs3116989	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	6p21.32	HLA-DPB2, COL11A2	rs3116989-?	NR	3E-17		1.096	[1.07-1.12]	Affymetrix [9000000] (imputed)	N
619	chr6_ssto_hap7	4579702	4579703	rs3116989	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	6p21.32	HLA-DPB2, COL11A2	rs3116989-G	NR	4E-14		1.078	[1.06-1.1]	Affymetrix [9000000] (imputed)	N
620	chr6_ssto_hap7	4612396	4612397	rs2229790	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	6p21.32	COL11A2	rs2229790-?	NR	3E-13		0.313	[0.23-0.4] unit decrease	Illumina [34656550] (imputed)	N
620	chr6_ssto_hap7	4616227	4616228	rs73741509	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	6p21.32		rs73741509-C	0.971	2E-14				Affymetrix [10369434] (imputed)	N
620	chr6_ssto_hap7	4616804	4616805	rs2855446	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	6p21.32	Intergenic	rs2855446-A	0.6847	4E-9	(MTAG)	0.0083	[0.0056-0.011] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
620	chr6_ssto_hap7	4618664	4618665	rs2855440	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein COL11A2	5,366 Icelandic ancestry individuals	NA	6p21.32		rs2855440-T	0.3577	4E-31		0.229242	[0.19-0.27] unit decrease	Illumina [7506463] (imputed)	N
620	chr6_ssto_hap7	4619800	4619801	rs73741526	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.32		rs73741526-A	0.971	3E-13				Affymetrix [10369434] (imputed)	N
620	chr6_ssto_hap7	4621843	4621844	rs147927477	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Height	458,235 European ancestry individuals	NA	6p21.32		rs147927477-?	NR	9E-12		0.215425	[0.15-0.28] unit decrease	NR [9800000] (imputed)	N
620	chr6_ssto_hap7	4624113	4624114	rs2254287	18193043	Willer CJ	2008-01-13	Nat Genet	Newly identified loci that influence lipid concentrations and risk of coronary artery disease.	LDL cholesterol	8,589 European ancestry individuals	12,981 European ancestry individuals	6p21.32	B3GALT4	rs2254287-G	0.38	5E-8		1.91	[NR] mg/dl increase	Affymetrix, Illumina [~ 2261000] (imputed)	N
620	chr6_ssto_hap7	4624408	4624409	rs1799908	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	COL11A2	rs1799908-A	NR	5E-10		0.0178819	[0.012-0.024] unit decrease	Affymetrix [321016] (imputed)	N
620	chr6_ssto_hap7	4632044	4632045	rs41317102	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	6p21.32	COL11A2	rs41317102-C	NR	2E-7		0.247907	[0.15-0.34] unit increase	Illumina [at least 950000] (imputed)	N
620	chr6_ssto_hap7	4633692	4633693	rs9277934	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	6p21.32	COL11A2	rs9277934-T	NR	2E-10		0.0194123	[0.013-0.025] unit increase	Affymetrix [321016] (imputed)	N
620	chr6_ssto_hap7	4672589	4672590	rs146306986	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	6p21.32	TAPBP	rs146306986-C	0.99	3E-96	(TAPBP, 12378_71_3)	2.5151718	[2.29-2.74] unit decrease	Illumina [> 1000000] (imputed)	N
620	chr6_ssto_hap7	4673091	4673092	rs1705001	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	6p21.32	intergenic	rs1705001-A	0.2413	4E-11		0.0133	[0.0094-0.0172] unit increase	Affymetrix [18391927] (imputed)	N
620	chr6_ssto_hap7	4674655	4674656	rs411919	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	6p21.32	RING1	rs411919-G	0.73	8E-14				NR [> 9500000] (imputed)	N
620	chr6_ssto_hap7	4677793	4677794	rs77206300	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PDIA3	5,363 Icelandic ancestry individuals	NA	6p21.32		rs77206300-A	0.01105	6E-12		0.630021	[0.45-0.81] unit increase	Illumina [7506463] (imputed)	N
620	chr6_ssto_hap7	4684433	4684434	rs9277952	23817570	Shi Y	2013-06-30	Nat Genet	A genome-wide association study identifies two new cervical cancer susceptibility loci at 4q12 and 17q12.	Cervical cancer	Up to 1,364 Han Chinese ancestry cases, up to 3,028 Han Chinese ancestry controls	4,167 Han Chinese ancestry cases, 7,196 Han Chinese ancestry controls	6p21.32	intergenic	rs9277952-?	0.53	2E-9	(Matched)	1.18	[1.12-1.23]	Affymetrix [563339]	N
621	chr6_ssto_hap7	4720070	4720071	rs17215231	32424353	Zhang H	2020-05-18	Nat Genet	Genome-wide association study identifies 32 novel breast cancer susceptibility loci from overall and subtype-specific analyses.	Breast cancer (estrogen-receptor negative, progesterone-receptor negative, and human epidermal growth factor-receptor negative)	8,602 European ancestry triple negative cases, 9,414 European ancestry BRCA1 mutation carrier cases, 100,971 European ancestry controls	NA	6p21.32	NR	rs17215231-C	0.92	9E-13		1.1764705	[1.12-1.23]	Illumina [~ 9700000] (imputed)	N
622	chr6_ssto_hap7	4866198	4866199	rs1705003	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	6p21.32		rs1705003-?	NR	5E-8				Affymetrix [NR] (imputed)	N
622	chr6_ssto_hap7	4866198	4866199	rs1705003	34197731	Li Q	2021-06-23	Am J Hum Genet	Whole-exome sequencing reveals common and rare variants in immunologic and neurological genes implicated in achalasia.	Idiopathic achalasia	100 Chinese Han ancestry cases, 313 Chinese Han ancestry controls	230 Chinese Han ancestry cases, 1,760 Chinese Han ancestry controls	6p21.32		rs1705003-G	0.048	3E-7		2.37		Illumina [192329]	N
622	chr6_ssto_hap7	4875444	4875445	rs9461856	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	6p21.32	SYNGAP1	rs9461856-A	NR	7E-12	(EA)	1.0775862	[1.06-1.1]	Illumina [6627481] (imputed)	N
622	chr6_ssto_hap7	4875444	4875445	rs9461856	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	6p21.32	BAK1, CUTA, DAXX, GGNBP1, KIFC1, LINC00336, MIR1234, MIR5004, MIR6834, MIR6873, PFDN6, PHF1, RGL2, SYNGAP1, TAPBP, WDR46, ZBTB22, ZBTB9	rs9461856-A		6E-12		1.07	[1.05-1.09]	Affymetrix, Illumina [NR]	N
622	chr6_ssto_hap7	4875444	4875445	rs9461856	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	6p21.32	NR	rs9461856-A	NR	4E-12		1.08	[NR]	Illumina [7158791] (imputed)	N
622	chr6_ssto_hap7	4875767	4875768	rs79926713	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		6p21.32	SYNGAP1	rs79926713-T	0.082	8E-6	(liability model)	0.13	[0.071-0.189] unit increase	NR [19725427] (imputed)	N
622	chr6_ssto_hap7	4891918	4891919	rs191549504	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Episodic memory (pairs-matching)	331,679 British ancestry individuals	NA	6p21.32		rs191549504-?	NR	2E-10				NR [7857346] (imputed)	N
622	chr6_ssto_hap7	4893252	4893253	rs3846852	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	6p21.32	NR	rs3846852-A	0.016	4E-6		1.364	[1.23-1.5]	Illumina [11270530] (imputed)	N
622	chr6_ssto_hap7	4918460	4918461	rs151326043	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	6p21.32		rs151326043-G	0.981	7E-15				Affymetrix [10369434] (imputed)	N
622	chr6_ssto_hap7	4920020	4920021	rs62407927	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	6p21.32	NR	rs62407927-?	NR	5E-9				Affymetrix [~ 8270000] (imputed)	N
622	chr6_ssto_hap7	4924310	4924311	rs9366821	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	6p21.32		rs9366821-T	0.588	4E-10				Affymetrix [10369434] (imputed)	N
585	chr7	40482	40483	rs6583337	25085501	Bunyavanich S	2014-08-02	BMC Med Genomics	Integrated genome-wide association, coexpression network, and expression single nucleotide polymorphism analysis identifies novel pathway in allergic rhinitis.	Allergic rhinitis	872 European ancestry cases, 1,193 Latino cases, 647 African American/Afro-Caribbean cases, 1,162 European ancestry controls, 1,133 Latino controls, 626 African American/Afro-Caribbean controls	NA	7p22.3	FAM20C	rs6583337-?	NR	1E-7	(AA)	2.17	[1.33-5.56]	Affymetrix, Illumina [NR] (imputed)	N
585	chr7	49671	49672	rs62429411	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	7p22.3		rs62429411-?	NR	7E-11		0.0137011	[0.0095-0.0179] unit decrease	Affymetrix [20259828] (imputed)	N
585	chr7	50353	50354	rs6583339	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	7p22.3	NR	rs6583339-?	NR	3E-32		11.83	NR z score increase	Illumina [at least 830937] (imputed)	N
585	chr7	82376	82377	rs11761441	25778476	Jun G	2015-03-17	Mol Psychiatry	A novel Alzheimer disease locus located near the gene encoding tau protein.	Alzheimer's disease in APOE e4- carriers	7,184 cases, 26,968 controls	718 European ancestry cases, 1,699 European ancestry controls	7p22.3	FAM20C	rs11761441-G	0.46	2E-6		1.12	[1.07-1.17]	NR [NR]	N
585	chr7	83910	83911	rs10251279	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Non-word reading	3,409 European ancestry individuals	NA	7p22.3	AC093627.8	rs10251279-A	0.826325714	2E-6		0.200723	[0.12-0.28] unit decrease	Illumina [6969139] (imputed)	N
585	chr7	85035	85036	rs56174358	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	7p22.3		rs56174358-?	NR	7E-8				NR [~ 8900000] (imputed)	N
585	chr7	96803	96804	rs6973474	34488071	Crist RC	2021-08-28	Drug Alcohol Depend	Analysis of genetic and clinical factors associated with buprenorphine response.	Response to buprenorphine in opioid use disorder	1,609 European ancestry individuals	NA	7p22.3		rs6973474-T	NR	8E-6		1.4043	[1.25-1.55]	Affymetrix [NR] (imputed)	N
586	chr7	188633	188634	rs111976262	32386320	Eckel-Passow JE	2020-05-09	Neuro Oncol	Adult Diffuse Glioma GWAS by Molecular Subtype Identifies Variants in D2HGDH and FAM20C.	Adult diffuse triple positive glioma (IDH and TERT mutations, 1p19q codeletion)	189 European and unknown ancestry cases, 1,889 European and unknown ancestry controls	138 European and unknown ancestry cases, 808 European and unknown ancestry controls	7p22.3	intergenic	rs111976262-?	NR	1E-8		5.738	NR z score decrease	Illumina [NR] (imputed)	N
587	chr7	295969	295970	rs148276213	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Heel bone mineral density T score	445,855 European ancestry individuals	NA	7p22.3		rs148276213-?	NR	3E-9		0.077442	[0.051-0.103] unit increase	NR [9800000] (imputed)	N
587	chr7	308158	308159	rs145090628	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7p22.3	NR	rs145090628-A	0.01045	1E-8	(MGMT)	0.007502	NR unit increase	Illumina [1671387] (imputed)	N
588	chr7	510890	510890	rs199961668	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		7p22.3	NR	rs199961668-AC	NR	5E-8		0.0430102	NR unit decrease	NR [NR] (imputed)	N
589	chr7	528648	528649	rs34886151	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	7p22.3	NR	rs34886151-A	0.0411406	3E-17		0.0674103	[0.052-0.083] unit increase	NR [19129689] (imputed)	N
589	chr7	533351	533352	rs9691699	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	7p22.3		rs9691699-?	NR	2E-55				NR [~ 8900000] (imputed)	N
589	chr7	533351	533352	rs9691699	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	7p22.3	NR	rs9691699-C	0.458848	7E-66		0.0577836	[0.051-0.064] unit increase	NR [19129689] (imputed)	N
589	chr7	533351	533352	rs9691699	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		7p22.3	PDGFA	rs9691699-C	NR	2E-21		0.0586672	NR unit increase	NR [NR] (imputed)	N
589	chr7	547799	547800	rs9690350	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (late vs. average onset facial hair)	26,066 European ancestry late onset individuals, 161,175 European ancestry average onset individuals	NA	7p22.3		rs9690350-C	NR	9E-20		0.0105724	[0.0083-0.0128] years increase	NR [7400000] (imputed)	N
589	chr7	547799	547800	rs9690350	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (early vs. average onset facial hair)	13,226 European ancestry early onset individuals, 161,175 European ancestry average onset individuals	NA	7p22.3		rs9690350-C	NR	2E-8		0.00528807	[0.0035-0.0071] years decrease	NR [7400000] (imputed)	N
589	chr7	547799	547800	rs9690350	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (age at voice breaking MTAG)	205,354 European ancestry individuals	NA	7p22.3		rs9690350-C	NR	3E-14		0.024951363	[0.019-0.031] years increase	NR [7400000] (imputed)	N
589	chr7	552467	552468	rs150909339	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		7p22.3	PDGFA	rs150909339-C	NR	4E-8		0.0655191	NR unit decrease	NR [NR] (imputed)	N
589	chr7	564028	564029	rs9801230	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		7p22.3	NR	rs9801230-A	NR	7E-10		0.0481417	NR unit decrease	NR [NR] (imputed)	N
589	chr7	564095	564096	rs9801466	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		7p22.3	PDGFA	rs9801466-A	NR	7E-17		0.0687191	NR unit decrease	NR [NR] (imputed)	N
589	chr7	564212	564213	rs62433864	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	7p22.3	NR	rs62433864-A	0.149499	8E-18		0.0404189	[0.031-0.05] unit decrease	NR [19129689] (imputed)	N
589	chr7	565947	565948	rs9330381	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		7p22.3	NR	rs9330381-A	NR	4E-9		0.0434477	NR unit decrease	NR [NR] (imputed)	N
589	chr7	598747	598748	rs9330360	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7p22.3		rs9330360-?	NR	1E-13				NR [~ 8900000] (imputed)	N
589	chr7	632714	632715	rs9719461	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Varicose veins	22,037 European ancestry cases, 437,665 European ancestry controls, 474 East Asian ancestry cases, 178,252 East Asian ancestry controls	NA	7p22.3		rs9719461-T	NR	4E-8		0.0614	[0.039-0.083] unit increase	Affymetrix, Illumina [25842955] (imputed)	N
589	chr7	632714	632715	rs9719461	30566020	Fukaya E	2018-12-01	Circulation	Clinical and Genetic Determinants of Varicose Veins.	Varicose veins	9,577 British ancestry cases, 327,959 British ancestry controls	NA	7p22.3	NR	rs9719461-T	0.66	7E-9		0.092	[0.061-0.123] unit increase	Affymetrix [10972371] (imputed)	N
589	chr7	641719	641720	rs12720019	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	7p22.3		rs12720019-?	NR	4E-28				NR [~ 8900000] (imputed)	N
589	chr7	651146	651147	rs28500790	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	7p22.3	NR	rs28500790-T	0.598509	5E-29		0.021645	[0.018-0.025] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
589	chr7	651146	651147	rs28500790	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	7p22.3	NR	rs28500790-T	0.598505	3E-33		0.023301	[0.02-0.027] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
590	chr7	656936	656938	rs71016890	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	7p22.3	PRKAR1B	rs71016890-C	0.6445	4E-12		0.02581188	[0.019-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
590	chr7	664818	664819	rs71518327	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p22.3	NR	rs71518327-G	0.622015	3E-32				Affymetrix, Illumina [24332387] (imputed)	N
590	chr7	664818	664819	rs71518327	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p22.3	NR	rs71518327-G	0.621658	1E-27				Affymetrix, Illumina [24653286] (imputed)	N
590	chr7	664818	664819	rs71518327	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p22.3	NR	rs71518327-G	0.620616	4E-33				Affymetrix, Illumina [24558453] (imputed)	N
590	chr7	671593	671593	rs35750745	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	7p22.3	PRKAR1B	rs35750745-CA	0.588308	2E-23		0.022796672	[0.018-0.027] unit increase	Affymetrix [93095623] (imputed)	N
590	chr7	671593	671593	rs35750745	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	7p22.3	PRKAR1B	rs35750745-CA	0.588338	4E-23		0.022722913	[0.018-0.027] unit increase	Affymetrix [93095623] (imputed)	N
590	chr7	671593	671593	rs35750745	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	7p22.3	PRKAR1B	rs35750745-CA	0.588309	2E-24		0.023362948	[0.019-0.028] unit increase	Affymetrix [93095623] (imputed)	N
590	chr7	671593	671593	rs35750745	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	7p22.3	PRKAR1B	rs35750745-CA	0.5878	4E-12		0.02548659	[0.018-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
590	chr7	671593	671593	rs35750745	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	7p22.3	PRKAR1B	rs35750745-CA	0.5878	8E-14		0.02735062	[0.02-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
590	chr7	672508	672509	rs9771385	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	7p22.3	NR	rs9771385-A	0.607718	4E-31		0.02276	[0.019-0.027] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
590	chr7	675580	675581	rs75444260	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels	1,338 Japanese ancestry individuals	NA	7p22.3	PRKAR1B	rs75444260-A	0.11	7E-9	(His)	0.42	[0.28-0.56] unit increase	Illumina [1288202] (imputed)	N
590	chr7	675580	675581	rs75444260	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels	1,338 Japanese ancestry individuals	NA	7p22.3	PRKAR1B	rs75444260-A	0.11	3E-8	(Trp)	0.39	[0.25-0.53] unit increase	Illumina [1288202] (imputed)	N
590	chr7	696601	696602	rs142846931	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		PRKAR1B	rs142846931-?	NR	6E-9	(female)	2.10716	[NR] unit decrease	Affymetrix [NR] (imputed)	N
590	chr7	755917	755918	rs6463523	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Subjective well-being	298,420 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	7p22.3	NR	rs6463523-T	0.6649	3E-6		0.015945949	[0.0092-0.0227] unit decrease	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
590	chr7	755986	755987	rs115359679	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	7p22.3	PRKAR1B	rs115359679-C	0.930782	9E-9		0.0164279	[0.011-0.022] unit decrease	Affymetrix [12370749]	N
590	chr7	784942	784943	rs79057730	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Initial pursuit acceleration	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	7p22.3	DNAAF5	rs79057730-G	0.157	4E-6	(EA)			Illumina [4404269] (imputed)	N
591	chr7	827324	827325	rs60871478	28247064	Deming Y	2017-02-28	Acta Neuropathol	Genome-wide association study identifies four novel loci associated with Alzheimer's endophenotypes and disease modifiers.	Cerebrospinal P-tau181p levels	3,146 individuals	NA	7p22.3	DNAAF5, SUN1	rs60871478-A	0.181	5E-7		0.035	[0.021-0.049] unit increase	Illumina [7358575] (imputed)	N
591	chr7	858505	858506	rs61008539	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Perceived unattractiveness to mosquitoes	16,576 European ancestry individuals	NA	7p22.3	SUN1	rs61008539-G	NR	6E-6		0.114865	[0.065-0.165] unit decrease	Illumina [7433384] (imputed)	N
591	chr7	859609	859610	rs4719460	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	7p22.3		rs4719460-T	0.656	2E-9		0.0088	[0.0059-0.0117] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
591	chr7	859609	859610	rs4719460	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	7p22.3	Intergenic	rs4719460-T	0.656	6E-10	(MTAG)	0.0086	[0.0059-0.0113] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
591	chr7	861696	861697	rs78733180	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	7p22.3	NR	rs78733180-C	NR	4E-9		0.0206	[0.014-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
591	chr7	861816	861817	rs76719833	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	7p22.3	NR	rs76719833-C	NR	3E-13		0.0258	[0.019-0.033] unit increase	Affymetrix [9000000] (imputed)	N
591	chr7	872657	872658	rs76632630	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	7p22.3		rs76632630-G	NR	2E-9		0.0145	[0.0098-0.0192] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
591	chr7	874638	874639	rs10950673	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	7p22.3		rs10950673-?	NR	3E-13				NR [~ 8900000] (imputed)	N
591	chr7	876226	876227	rs11768850	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	7p22.3	SUN1	rs11768850-T	0.42	5E-8		1.04	[1.03-1.05]	Affymetrix, Illumina [up to 12149979] (imputed)	N
591	chr7	885889	885890	rs112549496	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	7p22.3	SUN1	rs112549496-T	0.175256	2E-9		0.017413195	[0.012-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
591	chr7	885889	885890	rs112549496	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p22.3	NR	rs112549496-C	0.825637	2E-10				Affymetrix, Illumina [22063850] (imputed)	N
591	chr7	898564	898565	rs7794185	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	7p22.3	NR	rs7794185-C	0.824595	7E-13		0.017825	[0.013-0.023] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
592	chr7	925948	925949	rs10226357	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	7p22.3	GET4	rs10226357-G	0.59	3E-9		0.39	[0.25-0.53] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
592	chr7	925948	925949	rs10226357	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	7p22.3	GET4	rs10226357-G	0.5908	2E-9		0.4107	[0.28-0.54] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
592	chr7	929122	929123	rs4719730	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	7p22.3	NR	rs4719730-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
592	chr7	929122	929123	rs4719730	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	7p22.3		rs4719730-?	NR	7E-8				NR [~ 8900000] (imputed)	N
592	chr7	936191	936192	rs79577636	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 6, height of vermillion lower lip)	2,187 European ancestry individuals	NA	7p22.3	NR	rs79577636-A	0.007336	2E-6		0.8104	[0.48-1.14] unit increase	Illumina [10677593] (imputed)	N
592	chr7	939975	939976	rs3808347	34353775	Galesloot TE	2021-08-02	Eur Urol Oncol	Genome-wide Meta-analysis Identifies Novel Genes Associated with Recurrence and Progression in Non-muscle-invasive Bladder Cancer.	Recurrence-free survival in non-muscle-invasive bladder cancer	3,400 European ancestry individuals	NA	7p22.3		rs3808347-T	NR	4E-6		1.43	[1.23-1.67]	Illumina [7591411] (imputed)	N
592	chr7	964179	964180	rs13230191	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	7p22.3	ADAP1, COX19	rs13230191-C	0.280892	2E-12		0.017708587	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
592	chr7	970034	970035	rs10480059	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	7p22.3	ADAP1, COX19	rs10480059-T	0.51794	1E-12		0.016062727	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
592	chr7	970038	970039	rs10480060	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	7p22.3	NR	rs10480060-T	0.518191	9E-15		0.016188	[0.012-0.02] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
592	chr7	970040	970041	rs78582080	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	7p22.3		rs78582080-T	NR	1E-11		0.0154	[0.011-0.02] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
592	chr7	970040	970041	rs78582080	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p22.3	NR	rs78582080-T	0.564778	3E-12				Affymetrix, Illumina [23472807] (imputed)	N
592	chr7	980565	980566	rs6969773	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	7p22.3	ADAP1	rs6969773-T	0.532669	4E-8		0.0108347	[0.007-0.0147] unit increase	Affymetrix [NR] (imputed)	N
592	chr7	986850	986851	rs545368698	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	7p22.3	ADAP1, COX19	rs545368698-G	0.35408	7E-10		0.014776895	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
592	chr7	994755	994756	rs79672483	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	7p22.3	NR	rs79672483-A	NR	2E-14		0.0267	[0.02-0.034] unit increase	Affymetrix [9000000] (imputed)	N
592	chr7	994755	994756	rs79672483	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	7p22.3	NR	rs79672483-A	NR	1E-14		0.0271	[0.02-0.034] unit increase	Affymetrix [9000000] (imputed)	N
592	chr7	998801	998802	rs10951261	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	7p22.3	NR	rs10951261-A	NR	9E-11		0.0174	[0.012-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
592	chr7	998801	998802	rs10951261	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	7p22.3	NR	rs10951261-A	NR	3E-9		0.016	[0.011-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
592	chr7	998801	998802	rs10951261	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	7p22.3	NR	rs10951261-A	NR	6E-15		0.021	[0.016-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
592	chr7	998801	998802	rs10951261	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	7p22.3	NR	rs10951261-A	NR	4E-12		0.0187	[0.013-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
592	chr7	1003048	1003049	rs7784708	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	7p22.3	NR	rs7784708-G	0.642973	5E-12		0.014046	[0.01-0.018] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
592	chr7	1006572	1006573	rs7792825	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	7p22.3	COX19	rs7792825-C	0.284112	4E-10		0.015695779	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
592	chr7	1006572	1006573	rs7792825	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	7p22.3	COX19	rs7792825-C	0.284141	1E-9		0.015191712	[0.01-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
592	chr7	1010800	1010801	rs71538127	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	7p22.3	COX19	rs71538127-C	0.877948	1E-8		0.017306	[0.011-0.023] unit decrease	Affymetrix [NR] (imputed)	N
592	chr7	1010800	1010801	rs71538127	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	7p22.3	NR	rs71538127-C	0.877215	2E-13		0.00884176	[0.0063-0.0113] unit increase	Affymetrix [16582909] (imputed)	N
592	chr7	1010800	1010801	rs71538127	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	7p22.3	NR	rs71538127-C	0.877215	1E-10		0.00873972	[0.006-0.0115] unit increase	Affymetrix [16582965] (imputed)	N
592	chr7	1019783	1019784	rs10274964	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	7p22.3		rs10274964-C	0.541859	4E-9		0.0245534	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
592	chr7	1022727	1022728	rs12701220	23897914	Wang H	2013-07-29	Pediatrics	A genome-wide association study (GWAS) for bronchopulmonary dysplasia.	Bronchopulmonary dysplasia	117 African American newborn cases, 108 African American newborn controls, 448 Hispanic newborn cases, 460 Hispanic newborn controls, 74 Asian or Pacific Islander ancestry newborn cases, 93 Asian or Pacific Islander ancestry newborn controls, 174 European ancestry newborn cases, 216 European ancestry newborn controls, 14 newborn cases, 22 newborn controls	371 newborn cases, 424 newborn controls	7p22.3	COX19, CYP2W1	rs12701220-G	0.72	3E-6	(Hispanic)	1.5385	[NR]	Illumina [1795103]	N
592	chr7	1024580	1024581	rs3824081	30804566	Lane JM	2019-02-25	Nat Genet	Biological and clinical insights from genetics of insomnia symptoms.	Insomnia symptoms (never/rarely vs. usually)	129,270 European ancestry cases, 108,357 European ancestry controls	17,140 European ancestry cases, 61,850 European ancestry controls	7p22.3	CYP2W1	rs3824081-T	0.474743	3E-8		1.02	[1.01-1.03]	Affymetrix [14661600] (imputed)	N
592	chr7	1024580	1024581	rs3824081	30804566	Lane JM	2019-02-25	Nat Genet	Biological and clinical insights from genetics of insomnia symptoms.	Insomnia symptoms (never/rarely vs. sometimes/usually)	345,022 European ancestry cases, 108,357 European ancestry controls	17,140 European ancestry cases, 61,850 European ancestry controls	7p22.3	CYP2W1	rs3824081-T	0.474743	5E-10		1.02	[1.01-1.03]	Affymetrix [14661600] (imputed)	N
592	chr7	1028447	1028448	rs3808348	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	7p22.3	NR	rs3808348-C	0.792862	6E-18		0.0219868	[0.017-0.027] unit increase	NR [NR]	N
592	chr7	1029548	1029549	rs12701278	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	7p22.3		rs12701278-C	NR	6E-10		0.0176	[0.012-0.023] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
592	chr7	1029548	1029549	rs12701278	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	7p22.3		rs12701278-C	NR	7E-16		0.0237	[0.018-0.029] unit decrease	Affymetrix, Illumina [20529698] (imputed)	N
592	chr7	1029548	1029549	rs12701278	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	7p22.3	CYP2W1	rs12701278-T	0.78484	5E-24		0.00620851	[0.005-0.0074] unit increase	Affymetrix [13995440] (imputed)	N
592	chr7	1029584	1029585	rs9769088	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	7p22.3		rs9769088-T	0.609053	2E-13		0.0302283	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
592	chr7	1029584	1029585	rs9769088	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	7p22.3		rs9769088-T	0.609064	3E-13		0.0292443	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
592	chr7	1029584	1029585	rs9769088	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large HDL	115,082 European ancestry individuals	NA	7p22.3		rs9769088-T	0.609064	1E-21		0.0365172	[0.029-0.044] unit increase	NR [11722792] (imputed)	N
592	chr7	1029584	1029585	rs9769088	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Sphingomyelin levels	115,006 European ancestry individuals	NA	7p22.3		rs9769088-T	0.609075	4E-11		0.0262146	[0.018-0.034] unit increase	NR [11722792] (imputed)	N
592	chr7	1029584	1029585	rs9769088	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	7p22.3		rs9769088-T	0.609064	3E-16		0.0333304	[0.025-0.041] unit increase	NR [11722792] (imputed)	N
592	chr7	1029584	1029585	rs9769088	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large HDL	115,082 European ancestry individuals	NA	7p22.3		rs9769088-T	0.609064	5E-22		0.0368879	[0.029-0.044] unit increase	NR [11722792] (imputed)	N
592	chr7	1029584	1029585	rs9769088	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	7p22.3		rs9769088-T	0.609053	7E-14		0.0308468	[0.023-0.039] unit increase	NR [11722792] (imputed)	N
592	chr7	1029584	1029585	rs9769088	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	7p22.3		rs9769088-T	0.609063	2E-18		0.0329537	[0.026-0.04] unit decrease	NR [11722792] (imputed)	N
592	chr7	1029584	1029585	rs9769088	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	7p22.3		rs9769088-T	0.609064	2E-21		0.0383489	[0.03-0.046] unit increase	NR [11722792] (imputed)	N
592	chr7	1029584	1029585	rs9769088	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	7p22.3		rs9769088-T	0.609064	5E-14		0.0305228	[0.023-0.038] unit increase	NR [11722792] (imputed)	N
592	chr7	1029584	1029585	rs9769088	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	7p22.3		rs9769088-T	0.609064	1E-16		0.031285	[0.024-0.039] unit increase	NR [11722792] (imputed)	N
592	chr7	1029584	1029585	rs9769088	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	7p22.3		rs9769088-T	0.609064	8E-20		0.0360487	[0.028-0.044] unit increase	NR [11722792] (imputed)	N
592	chr7	1029584	1029585	rs9769088	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	7p22.3		rs9769088-T	0.609064	8E-18		0.0341069	[0.026-0.042] unit increase	NR [11722792] (imputed)	N
592	chr7	1029584	1029585	rs9769088	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large HDL particles	115,082 European ancestry individuals	NA	7p22.3		rs9769088-T	0.609064	2E-22		0.0373998	[0.03-0.045] unit increase	NR [11722792] (imputed)	N
592	chr7	1029584	1029585	rs9769088	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	7p22.3		rs9769088-T	0.609053	7E-10		0.0250679	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
592	chr7	1029584	1029585	rs9769088	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	7p22.3		rs9769088-T	0.609064	5E-11		0.0262141	[0.018-0.034] unit increase	NR [11722792] (imputed)	N
592	chr7	1029584	1029585	rs9769088	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	7p22.3		rs9769088-T	0.609057	5E-17		0.0341916	[0.026-0.042] unit increase	NR [11722792] (imputed)	N
592	chr7	1029584	1029585	rs9769088	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	7p22.3		rs9769088-T	0.609064	7E-19		0.0338486	[0.026-0.041] unit increase	NR [11722792] (imputed)	N
592	chr7	1029584	1029585	rs9769088	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	7p22.3		rs9769088-T	0.609064	1E-16		0.0310729	[0.024-0.038] unit increase	NR [11722792] (imputed)	N
592	chr7	1029584	1029585	rs9769088	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	7p22.3		rs9769088-T	0.609053	3E-11		0.0269547	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
592	chr7	1029584	1029585	rs9769088	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	7p22.3		rs9769088-T	0.609064	4E-12		0.027663	[0.02-0.035] unit increase	NR [11722792] (imputed)	N
592	chr7	1029584	1029585	rs9769088	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	7p22.3		rs9769088-T	0.609057	7E-16		0.0335165	[0.025-0.042] unit increase	NR [11722792] (imputed)	N
592	chr7	1029584	1029585	rs9769088	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	7p22.3		rs9769088-T	0.609064	7E-19		0.0341061	[0.027-0.042] unit increase	NR [11722792] (imputed)	N
592	chr7	1029584	1029585	rs9769088	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	7p22.3		rs9769088-T	0.609064	1E-17		0.0320917	[0.025-0.039] unit increase	NR [11722792] (imputed)	N
592	chr7	1029584	1029585	rs9769088	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	7p22.3	CYP2W1	rs9769088-T	0.611215	6E-26		0.0213501	[0.017-0.025] unit increase	Affymetrix [NR] (imputed)	N
592	chr7	1032636	1032637	rs10236293	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	7p22.3		rs10236293-A	NR	6E-12		0.0163	[0.012-0.021] unit decrease	Affymetrix, Illumina [20536134] (imputed)	N
592	chr7	1032636	1032637	rs10236293	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	7p22.3		rs10236293-A	NR	3E-28		0.0251	[0.021-0.03] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
592	chr7	1033604	1033605	rs12701310	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	7p22.3		rs12701310-C	0.510244	4E-8		0.0220562	[0.014-0.03] unit increase	NR [11722792] (imputed)	N
592	chr7	1033604	1033605	rs12701310	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	7p22.3		rs12701310-T	NR	3E-11		0.0129	[0.0092-0.0166] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
592	chr7	1033604	1033605	rs12701310	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	7p22.3	CYP2W1, C7orf50	rs12701310-T	0.487995	1E-12		0.015946992	[0.012-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
592	chr7	1039002	1039003	rs10256972	27506219	Wang W	2016-08-09	Reprod Sci	Pooling-Based Genome-Wide Association Study Identifies Risk Loci in the Pathogenesis of Ovarian Endometrioma in Chinese Han Women.	Endometriosis	50 Chinese Han ancestry cases, 50 Chinese Han ancestry uterine myoma or hydrosalpinx controls	1,466 Chinese Han ancestry cases, 1,410 Chinese Han ancestry uterine myoma or hydrosalpinx controls	7p22.3	C7orf50	rs10256972-?	NR	3E-6		1.29	[1.162-1.433]	Affymetrix [906600]	N
592	chr7	1039002	1039003	rs10256972	20834067	Yashin AI	2010-09-01	Aging (Albany NY)	Joint influence of small-effect genetic variants on human longevity.	Longevity	1,173 individuals	NA	7p22.3	C7orf50	rs10256972-?	NR	1E-6	(less than or equal to)			NR [~ 550000]	N
592	chr7	1039064	1039065	rs7799110	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p22.3	NR	rs7799110-G	0.533316	9E-11				Affymetrix, Illumina [24588908] (imputed)	N
592	chr7	1047614	1047615	rs10272002	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	7p22.3	NR	rs10272002-A	0.787524	3E-19		0.0210319	[0.016-0.026] unit increase	Affymetrix [15000001]	N
593	chr7	1050876	1050877	rs62433138	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	7p22.3		rs62433138-T	0.570871	9E-18		0.0329035	[0.025-0.04] unit increase	NR [11722792] (imputed)	N
593	chr7	1050876	1050877	rs62433138	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	7p22.3		rs62433138-T	0.570871	5E-15		0.0311432	[0.023-0.039] unit decrease	NR [11722792] (imputed)	N
593	chr7	1051663	1051664	rs10233430	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	7p22.3	C7orf50	rs10233430-T	0.572985	3E-26		0.0204688	[0.017-0.024] unit increase	Affymetrix [NR] (imputed)	N
593	chr7	1055581	1055582	rs11971790	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	7p22.3		rs11971790-T	0.502514	2E-8		0.0228089	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
593	chr7	1058192	1058193	rs6951245	27286809	Ligthart S	2016-06-10	BMC Genomics	Bivariate genome-wide association study identifies novel pleiotropic loci for lipids and inflammation.	C-reactive protein levels or total cholesterol levels (pleiotropy)	65,000 individuals (C-reactive protein), 100,184 individuals (total cholesterol)	NA	7p22.3	C7orf50	rs6951245-A	NR	3E-9				NR [2501549] (imputed)	N
593	chr7	1061421	1061422	rs4723518	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid pneumonia vs population)	1,004 European ancestry cases, 680,354 European ancestry controls, 218 Hispanic or Latin American cases, 94,318 Hispanic or Latin American controls, 64 Black or African American cases, 22,412 Black or African American controls	NA	7p22.3		rs4723518-?	NR	9E-6		0.6261943	[0.35-0.9] unit decrease	Illumina [9901720] (imputed)	N
593	chr7	1062365	1062366	rs1057558	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total phospholipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	7p22.3		rs1057558-T	0.779688	2E-11		0.0319154	[0.023-0.041] unit increase	NR [11722792] (imputed)	N
593	chr7	1062365	1062366	rs1057558	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in IDL	115,082 European ancestry individuals	NA	7p22.3		rs1057558-T	0.779688	6E-13		0.0347141	[0.025-0.044] unit increase	NR [11722792] (imputed)	N
593	chr7	1062365	1062366	rs1057558	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total free cholesterol levels	115,082 European ancestry individuals	NA	7p22.3		rs1057558-T	0.779688	2E-8		0.0272981	[0.018-0.037] unit increase	NR [11722792] (imputed)	N
593	chr7	1062365	1062366	rs1057558	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total esterified cholesterol levels	115,082 European ancestry individuals	NA	7p22.3		rs1057558-T	0.779688	4E-9		0.0282924	[0.019-0.038] unit increase	NR [11722792] (imputed)	N
593	chr7	1062365	1062366	rs1057558	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholines levels	115,006 European ancestry individuals	NA	7p22.3		rs1057558-T	0.77966	1E-12		0.0331305	[0.024-0.042] unit increase	NR [11722792] (imputed)	N
593	chr7	1062365	1062366	rs1057558	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol levels	115,082 European ancestry individuals	NA	7p22.3		rs1057558-T	0.779688	5E-9		0.0281824	[0.019-0.038] unit increase	NR [11722792] (imputed)	N
593	chr7	1062365	1062366	rs1057558	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of IDL particles	115,082 European ancestry individuals	NA	7p22.3		rs1057558-T	0.779688	6E-10		0.0305632	[0.021-0.04] unit increase	NR [11722792] (imputed)	N
593	chr7	1062365	1062366	rs1057558	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in IDL	115,082 European ancestry individuals	NA	7p22.3		rs1057558-T	0.779688	4E-11		0.0318812	[0.022-0.041] unit increase	NR [11722792] (imputed)	N
593	chr7	1062365	1062366	rs1057558	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in IDL	115,082 European ancestry individuals	NA	7p22.3		rs1057558-T	0.779688	4E-11		0.031897	[0.022-0.041] unit increase	NR [11722792] (imputed)	N
593	chr7	1065946	1065947	rs73670309	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	7p22.3	NR	rs73670309-C	0.893632	1E-10		0.0117785	[0.0078-0.0157] unit increase	Affymetrix [16585854] (imputed)	N
593	chr7	1065946	1065947	rs73670309	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	7p22.3	NR	rs73670309-C	0.893632	3E-7		0.0110081	[0.0065-0.0155] unit increase	Affymetrix [16585866] (imputed)	N
593	chr7	1066296	1066297	rs3735687	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	7p22.3		rs3735687-A	0.577195	1E-19		0.0333688	[0.026-0.041] unit increase	NR [11722792] (imputed)	N
593	chr7	1066296	1066297	rs3735687	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in HDL	115,082 European ancestry individuals	NA	7p22.3		rs3735687-A	0.577195	2E-12		0.0264048	[0.019-0.034] unit increase	NR [11722792] (imputed)	N
593	chr7	1066296	1066297	rs3735687	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large HDL	115,082 European ancestry individuals	NA	7p22.3		rs3735687-A	0.577195	4E-19		0.032986	[0.026-0.04] unit increase	NR [11722792] (imputed)	N
593	chr7	1066296	1066297	rs3735687	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in HDL	115,082 European ancestry individuals	NA	7p22.3		rs3735687-A	0.577195	8E-12		0.0259369	[0.019-0.033] unit increase	NR [11722792] (imputed)	N
593	chr7	1066296	1066297	rs3735687	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	HDL cholesterol levels	115,082 European ancestry individuals	NA	7p22.3		rs3735687-A	0.577195	5E-11		0.0246233	[0.017-0.032] unit increase	NR [11722792] (imputed)	N
593	chr7	1066296	1066297	rs3735687	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	7p22.3		rs3735687-A	0.577195	3E-10		0.0241448	[0.017-0.032] unit increase	NR [11722792] (imputed)	N
593	chr7	1066296	1066297	rs3735687	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	7p22.3		rs3735687-A	0.577195	6E-21		0.03456	[0.027-0.042] unit increase	NR [11722792] (imputed)	N
593	chr7	1066296	1066297	rs3735687	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in HDL	115,082 European ancestry individuals	NA	7p22.3		rs3735687-A	0.577195	2E-16		0.0306837	[0.023-0.038] unit increase	NR [11722792] (imputed)	N
593	chr7	1066296	1066297	rs3735687	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	7p22.3		rs3735687-A	0.577195	6E-20		0.0335957	[0.026-0.041] unit increase	NR [11722792] (imputed)	N
593	chr7	1066296	1066297	rs3735687	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	7p22.3		rs3735687-A	0.577195	2E-9		0.0226048	[0.015-0.03] unit increase	NR [11722792] (imputed)	N
593	chr7	1066296	1066297	rs3735687	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	7p22.3		rs3735687-A	0.577195	1E-20		0.0347106	[0.027-0.042] unit increase	NR [11722792] (imputed)	N
593	chr7	1066296	1066297	rs3735687	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	7p22.3		rs3735687-G	NR	1E-22		0.0207	[0.017-0.025] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
593	chr7	1066296	1066297	rs3735687	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	7p22.3		rs3735687-G	NR	2E-10		0.0128	[0.0089-0.0167] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
593	chr7	1067905	1067906	rs2362529	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	7p22.3	C7orf50	rs2362529-T	0.7754	8E-19		0.0284	[0.022-0.035] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
593	chr7	1074133	1074134	rs869412	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	7p22.3		rs869412-T	0.773188	1E-14		0.0374399	[0.028-0.047] unit increase	NR [11722792] (imputed)	N
593	chr7	1074133	1074134	rs869412	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	7p22.3	C7orf50	rs869412-T	0.774318	1E-8		0.0142708	[0.0094-0.0192] unit increase	Affymetrix [NR] (imputed)	N
593	chr7	1077116	1077117	rs200908540	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	145,505 East Asian ancestry individuals	NA	7p22.3		rs200908540-C	0.199134	3E-8		0.0244785	[0.016-0.033] unit increase	Illumina [13477770] (imputed)	N
593	chr7	1077116	1077117	rs200908540	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	145,502 East Asian ancestry individuals	NA	7p22.3		rs200908540-C	0.199124	2E-9		0.0273412	[0.018-0.036] unit increase	Illumina [13477767] (imputed)	N
593	chr7	1077116	1077117	rs200908540	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	145,515 East Asian ancestry individuals	NA	7p22.3		rs200908540-C	0.199139	1E-8		0.0262292	[0.017-0.035] unit increase	Illumina [13477770] (imputed)	N
593	chr7	1078562	1078563	rs572301360	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large HDL	115,082 European ancestry individuals	NA	7p22.3		rs572301360-G	0.747281	4E-12		0.0327944	[0.024-0.042] unit increase	NR [11722792] (imputed)	N
593	chr7	1078562	1078563	rs572301360	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium HDL	115,082 European ancestry individuals	NA	7p22.3		rs572301360-G	0.747281	5E-8		0.0245174	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
593	chr7	1078562	1078563	rs572301360	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium HDL	115,082 European ancestry individuals	NA	7p22.3		rs572301360-G	0.747281	5E-8		0.0247603	[0.016-0.034] unit increase	NR [11722792] (imputed)	N
593	chr7	1078562	1078563	rs572301360	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium HDL particles	115,082 European ancestry individuals	NA	7p22.3		rs572301360-G	0.747281	4E-8		0.0246253	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
593	chr7	1078562	1078563	rs572301360	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	7p22.3		rs572301360-G	0.747281	2E-9		0.0283657	[0.019-0.038] unit decrease	NR [11722792] (imputed)	N
593	chr7	1078562	1078563	rs572301360	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein A1 levels	115,082 European ancestry individuals	NA	7p22.3		rs572301360-G	0.747281	2E-9		0.0267496	[0.018-0.035] unit increase	NR [11722792] (imputed)	N
593	chr7	1081040	1081040	rs146258447	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	7p22.3	AC073957.15, C7orf50	rs146258447-CA	0.310892	5E-12		0.0169358	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
593	chr7	1081441	1081442	rs10282584	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in IDL	115,082 European ancestry individuals	NA	7p22.3		rs10282584-C	0.589021	1E-14		0.0312172	[0.023-0.039] unit increase	NR [11722792] (imputed)	N
593	chr7	1081441	1081442	rs10282584	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in IDL	115,082 European ancestry individuals	NA	7p22.3		rs10282584-C	0.589021	4E-11		0.0269358	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
593	chr7	1081441	1081442	rs10282584	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very small VLDL	115,082 European ancestry individuals	NA	7p22.3		rs10282584-C	0.589021	4E-18		0.0351765	[0.027-0.043] unit increase	NR [11722792] (imputed)	N
593	chr7	1081441	1081442	rs10282584	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	7p22.3		rs10282584-C	0.589021	3E-17		0.0344951	[0.027-0.042] unit increase	NR [11722792] (imputed)	N
593	chr7	1082917	1082918	rs10275712	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very small VLDL	115,082 European ancestry individuals	NA	7p22.3		rs10275712-G	0.784388	2E-15		0.0390347	[0.029-0.049] unit increase	NR [11722792] (imputed)	N
593	chr7	1082917	1082918	rs10275712	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very small VLDL	115,082 European ancestry individuals	NA	7p22.3		rs10275712-G	0.784388	3E-14		0.0374061	[0.028-0.047] unit increase	NR [11722792] (imputed)	N
593	chr7	1082917	1082918	rs10275712	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very small VLDL particles	115,082 European ancestry individuals	NA	7p22.3		rs10275712-G	0.784388	7E-15		0.0383656	[0.029-0.048] unit increase	NR [11722792] (imputed)	N
593	chr7	1082917	1082918	rs10275712	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	7p22.3	C7orf50	rs10275712-?	NR	6E-12		0.0214	[0.016-0.027] unit decrease	Affymetrix [5701386] (imputed)	N
593	chr7	1082917	1082918	rs10275712	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	7p22.3	C7orf50	rs10275712-A	0.198	2E-16		0.0275	[0.021-0.034] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
593	chr7	1083776	1083777	rs1997243	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	7p22.3	GPR146	rs1997243-G	0.16	3E-10		0.033	[NR] unit increase	NR [NR] (imputed)	N
593	chr7	1088606	1088607	rs10951594	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p22.3	NR	rs10951594-G	0.558254	7E-15				Affymetrix, Illumina [24246363] (imputed)	N
593	chr7	1090504	1090505	rs12701713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large LDL	115,082 European ancestry individuals	NA	7p22.3		rs12701713-G	0.783271	6E-12		0.0338286	[0.024-0.043] unit increase	NR [11722792] (imputed)	N
593	chr7	1090504	1090505	rs12701713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large HDL	115,082 European ancestry individuals	NA	7p22.3		rs12701713-G	0.783271	4E-20		0.0438251	[0.034-0.053] unit increase	NR [11722792] (imputed)	N
593	chr7	1090504	1090505	rs12701713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in LDL	115,082 European ancestry individuals	NA	7p22.3		rs12701713-G	0.783271	2E-8		0.0276631	[0.018-0.037] unit increase	NR [11722792] (imputed)	N
593	chr7	1090504	1090505	rs12701713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in IDL	115,082 European ancestry individuals	NA	7p22.3		rs12701713-G	0.783271	5E-14		0.0369163	[0.027-0.047] unit increase	NR [11722792] (imputed)	N
593	chr7	1090504	1090505	rs12701713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphoglycerides levels	115,006 European ancestry individuals	NA	7p22.3		rs12701713-G	0.783241	4E-12		0.0327946	[0.024-0.042] unit increase	NR [11722792] (imputed)	N
593	chr7	1090504	1090505	rs12701713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphatidylcholine levels	115,006 European ancestry individuals	NA	7p22.3		rs12701713-G	0.783241	2E-14		0.0359359	[0.027-0.045] unit increase	NR [11722792] (imputed)	N
593	chr7	1090504	1090505	rs12701713	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls, 33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	7p22.3		rs12701713-A	NR	5E-8		0.0319	[0.021-0.043] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
593	chr7	1095005	1095006	rs189254458	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large HDL	115,082 European ancestry individuals	NA	7p22.3		rs189254458-G	0.996383	8E-9		0.19077	[0.13-0.26] unit increase	NR [11722792] (imputed)	N
593	chr7	1095700	1095701	rs143407337	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CCR2 on plasmacytoid Dendritic Cell	2,871 Sardinian (founder/genetic isolate) ancestry individuals	NA	7p22.3		rs143407337-T	0.21439	9E-13		0.2439	[0.18-0.31] unit increase	Illumina [17922630] (imputed)	N
593	chr7	1095700	1095701	rs143407337	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CCR2 on CD62L+ plasmacytoid Dendritic Cell	2,871 Sardinian (founder/genetic isolate) ancestry individuals	NA	7p22.3		rs143407337-T	0.21439	1E-12		0.2427	[0.18-0.31] unit increase	Illumina [17922630] (imputed)	N
593	chr7	1099091	1099092	rs12701798	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	7p22.3		rs12701798-G	0.437123712	1E-8		0.046927024	[0.031-0.063] unit increase	Illumina [13134967] (imputed)	N
593	chr7	1102363	1102364	rs12701824	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	7p22.3	NR	rs12701824-A	NR	1E-12		0.0224	[0.016-0.028] unit decrease	Affymetrix [9000000] (imputed)	N
593	chr7	1102363	1102364	rs12701824	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	7p22.3	NR	rs12701824-A	NR	5E-10		0.0195	[0.013-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
593	chr7	1102363	1102364	rs12701824	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	7p22.3	NR	rs12701824-A	NR	6E-14		0.0236	[0.018-0.03] unit decrease	Affymetrix [9000000] (imputed)	N
593	chr7	1102363	1102364	rs12701824	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	7p22.3	NR	rs12701824-A	NR	2E-10		0.021	[0.015-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
593	chr7	1102782	1102783	rs79218272	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		C7orf50	rs79218272-?	NR	4E-9	(female)	0.491438	[NR] unit increase	Affymetrix [NR] (imputed)	N
593	chr7	1102828	1102829	rs7811577	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls, 49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	7p22.3		rs7811577-G	NR	2E-9		0.0343	[0.023-0.045] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
593	chr7	1105425	1105426	rs12701834	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p22.3	NR	rs12701834-G	0.284931	3E-10				Affymetrix, Illumina [20825802] (imputed)	N
593	chr7	1105425	1105426	rs12701834	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	7p22.3	NR	rs12701834-G	0.320423	4E-12		0.014341	[0.01-0.018] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
593	chr7	1106011	1106012	rs1104888	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	7p22.3	NR	rs1104888-T	0.499874	2E-17		0.016157	[0.012-0.02] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
593	chr7	1106011	1106012	rs1104888	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	7p22.3		rs1104888-?	NR	4E-12				NR [~ 8900000] (imputed)	N
593	chr7	1106980	1106981	rs2960826	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	7p22.3		rs2960826-C	NR	4E-12		0.0165	[0.012-0.021] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
593	chr7	1106980	1106981	rs2960826	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	7p22.3		rs2960826-C	NR	4E-8		0.013	[0.0083-0.0177] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
593	chr7	1114380	1114381	rs10252234	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	7p22.3	C7orf50	rs10252234-C	0.762829	2E-12		0.0157095	[0.011-0.02] unit decrease	Affymetrix [NR] (imputed)	N
593	chr7	1117435	1117436	rs10274367	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	7p22.3		rs10274367-T	0.644892	4E-8		0.0219934	[0.014-0.03] unit decrease	NR [11722792] (imputed)	N
593	chr7	1117435	1117436	rs10274367	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	7p22.3		rs10274367-T	0.644642	8E-10		0.0264007	[0.018-0.035] unit increase	NR [11722792] (imputed)	N
593	chr7	1126658	1126659	rs3808351	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	7p22.3		rs3808351-G	0.680038	7E-11		0.0288707	[0.02-0.038] unit decrease	NR [11722792] (imputed)	N
593	chr7	1130583	1130584	rs12702029	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	7p22.3	GPER1, C7orf50	rs12702029-C	0.447317	7E-17		0.01878889	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
593	chr7	1130583	1130584	rs12702029	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	7p22.3	GPER1, C7orf50	rs12702029-C	0.447289	4E-18		0.019513465	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
593	chr7	1130583	1130584	rs12702029	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	7p22.3	GPER1, C7orf50	rs12702029-C	0.447216	2E-16		0.01838645	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
593	chr7	1131410	1131411	rs11544331	31748686	Oh JJ	2019-11-20	Sci Rep	An exome-wide rare variant analysis of Korean men identifies three novel genes predisposing to prostate cancer.	Prostate cancer	985 Korean ancestry cases and 6,273 Korean ancestry controls	NA	7p22.3	GPER1	rs11544331-T	0.0285	1E-15				Illumina [71270]	N
593	chr7	1132504	1132505	rs2070118	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	7p22.3	GPER1	rs2070118-A	0.235907	2E-13		0.01949855	[0.014-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
593	chr7	1141469	1141470	rs78399431	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	7p22.3	NR	rs78399431-A	0.2398	1E-6	(East Asian)	0.3649	[0.22-0.51] unit increase	Illumina [6200000] (imputed)	N
593	chr7	1141469	1141470	rs78399431	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	7p22.3	NR	rs78399431-A	0.241	1E-8	(East Asian)	0.3022	[0.2-0.41] unit increase	Illumina [6200000] (imputed)	N
593	chr7	1141469	1141470	rs78399431	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	7p22.3	NR	rs78399431-A	0.2398	7E-8	(East Asian)	0.2543	[0.16-0.35] unit increase	Illumina [6200000] (imputed)	N
594	chr7	1193377	1193378	rs13245024	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	7p22.3	ZFAND2A	rs13245024-T	0.409443	3E-9		0.013461616	[0.009-0.0179] unit increase	Affymetrix [93095623] (imputed)	N
594	chr7	1195691	1195692	rs73033340	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	7p22.3		rs73033340-G	NR	2E-10		0.0414	[0.029-0.054] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
594	chr7	1195691	1195692	rs73033340	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	7p22.3		rs73033340-G	NR	9E-10		0.0416	[0.028-0.055] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
594	chr7	1195691	1195692	rs73033340	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	7p22.3	ZFAND2A	rs73033340-G	0.0317516	3E-8		0.0953758	[0.062-0.129] unit decrease	Affymetrix [7288503] (imputed)	N
594	chr7	1195691	1195692	rs73033340	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	7p22.3		rs73033340-?	NR	2E-18				NR [~ 8900000] (imputed)	N
594	chr7	1195691	1195692	rs73033340	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	7p22.3		rs73033340-?	NR	4E-9				NR [~ 8900000] (imputed)	N
594	chr7	1195691	1195692	rs73033340	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	7p22.3	ZFAND2A	rs73033340-A	0.9617	4E-24		0.4615	[0.37-0.55] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
594	chr7	1196674	1196675	rs12666678	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in diabetes mellitus	153 Korean ancestry cases, 5,161 Korean ancestry controls	NA	7p22.3		rs12666678-C	0.1485	6E-7		2.013	[1.528-2.65]	Affymetrix [7975321] (imputed)	N
594	chr7	1202955	1202956	rs2960834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for VLDL particles	115,082 European ancestry individuals	NA	7p22.3		rs2960834-G	0.554357	1E-15		0.0310334	[0.023-0.039] unit decrease	NR [11722792] (imputed)	N
594	chr7	1248879	1248880	rs1568773	29093273	Almgren P	2017-11-02	JCI Insight	Genetic determinants of circulating GIP and GLP-1 concentrations.	GLP-1 levels in response to oral glucose tolerance test (fasting)	3,344 Swedish ancestry individuals	4,905 Finnish ancestry individuals	7p22.3	ZFAND2A, UNCX	rs1568773-G	0.03	5E-6		0.113	[0.064-0.162] unit decrease	Illumina [at least 81396]	N
594	chr7	1269592	1269593	rs11341092	31417091	Kou I	2019-08-15	Nat Commun	Genome-wide association study identifies 14 previously unreported susceptibility loci for adolescent idiopathic scoliosis in Japanese.	Adolescent idiopathic scoliosis	5,327 Japanese ancestry cases, 73,884 Japanese ancestry controls	NA	7p22.3	LOC101927021, UNCX	rs11341092-AC	0.31	3E-8		1.14	[1.09-1.19]	Illumina [9332516] (imputed)	N
594	chr7	1270698	1270699	rs6950388	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		7p22.3	UNCX	rs6950388-G	0.204857	3E-8		0.00945149	[0.0061-0.0128] unit decrease	Affymetrix [12370749]	N
594	chr7	1270698	1270699	rs6950388	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	7p22.3		rs6950388-?	NR	2E-9				NR [~ 8900000] (imputed)	N
594	chr7	1270698	1270699	rs6950388	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	Urea levels	19,293 British ancestry individuals from 6863 families.	NA	7p22.3	UNCX	rs6950388-A	0.1872	2E-8		0.07970589	[0.052-0.107] mg/dl increase	Illumina [24111857] (imputed)	N
594	chr7	1270737	1270738	rs58063923	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	7p22.3		rs58063923-T	0.352517	2E-9		0.013129	[0.0089-0.0174] unit decrease	Illumina [13479295] (imputed)	N
594	chr7	1271743	1271744	rs78148157	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	7p22.3	UNCX	rs78148157-?	NR	2E-11		0.020612165	[0.015-0.027] unit decrease	Illumina [27896057] (imputed)	N
594	chr7	1273844	1273845	rs10275044	22797727	Okada Y	2012-07-15	Nat Genet	Meta-analysis identifies multiple loci associated with kidney function-related traits in east Asian populations.	Renal function-related traits (BUN)	39,717 East Asian ancestry individuals	17,461 East Asian ancestry individuals	7p22.3	UNCX	rs10275044-T	0.34	4E-9		0.0069	[0.0046-0.0093] mg/dl increase	Affymetrix, Illumina [2281523] (imputed)	N
594	chr7	1279104	1279105	rs62435144	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7p22.3		rs62435144-?	NR	6E-10				NR [~ 8900000] (imputed)	N
594	chr7	1281352	1281353	rs2140579	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	7p22.3		rs2140579-G	0.690536	2E-8		0.0168986	[0.011-0.023] unit increase	Illumina [13479924] (imputed)	N
594	chr7	1285194	1285195	rs10277115	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	153,512 East Asian ancestry individuals	NA	7p22.3		rs10277115-T	0.317603	1E-17		0.0288897	[0.022-0.036] unit decrease	Illumina [13479135] (imputed)	N
594	chr7	1285194	1285195	rs10277115	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	7p22.3	NR	rs10277115-A	0.24	2E-40		0.0307	[0.026-0.035] unit decrease	NR [NR]	N
594	chr7	1285194	1285195	rs10277115	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	150,708 East Asian ancestry individuals	NA	7p22.3	NR	rs10277115-A	0.680179	4E-16		0.032226	[0.024-0.04] SD units increase	Affymetrix, Illumina [16709798] (imputed)	N
594	chr7	1285194	1285195	rs10277115	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	149,861 East Asian ancestry individuals	NA	7p22.3	NR	rs10277115-A	0.680167	4E-19		0.035507	[0.028-0.043] SD units increase	Affymetrix, Illumina [16709126] (imputed)	N
594	chr7	1285194	1285195	rs10277115	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	142,940 East Asian ancestry individuals	NA	7p22.3	NR	rs10277115-A	0.682049	4E-21		0.038429	[0.03-0.046] SD units increase	Affymetrix, Illumina [16289021] (imputed)	N
594	chr7	1285194	1285195	rs10277115	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Estimated glomerular filtration rate	8,261 African American individuals, 18,548 Hispanic/Latino individuals, 150 Asian ancestry individuals, 602 Native American ancestry individuals, 339 individuals	NA	7p22.3	NR	rs10277115-?	NR	4E-6		0.6816675	[0.39-0.97] unit decrease	Illumina [30341014] (imputed)	N
594	chr7	1285194	1285195	rs10277115	26831199	Pattaro C	2016-01-21	Nat Commun	Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function.	Glomerular filtration rate (creatinine)	133,413 European ancestry individuals	42,166 European ancestry individuals, up to 16,471 African ancestry individuals, up to 42,296 Asian ancestry individuals	7p22.3	UNCX	rs10277115-A	0.24	9E-14	(EA)	0.009	[0.0066-0.0114] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
594	chr7	1285194	1285195	rs10277115	26831199	Pattaro C	2016-01-21	Nat Commun	Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function.	Glomerular filtration rate (creatinine)	133,413 European ancestry individuals	42,166 European ancestry individuals, up to 16,471 African ancestry individuals, up to 42,296 Asian ancestry individuals	7p22.3	UNCX	rs10277115-A	0.23	2E-14		0.0084	[NR] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
594	chr7	1285194	1285195	rs10277115	22797727	Okada Y	2012-07-15	Nat Genet	Meta-analysis identifies multiple loci associated with kidney function-related traits in east Asian populations.	Renal function-related traits (sCR)	42,257 East Asian, South Asian, and South East Asian ancestry individuals	19,662 East Asian ancestry individuals	7p22.3	UNCX	rs10277115-T	0.35	5E-11		0.0052	[0.0036-0.0068] mg/dl increase	Affymetrix, Illumina [2353587] (imputed)	N
594	chr7	1285194	1285195	rs10277115	22797727	Okada Y	2012-07-15	Nat Genet	Meta-analysis identifies multiple loci associated with kidney function-related traits in east Asian populations.	Renal function-related traits (eGRFcrea)	42,451 East Asian, South Asian, and South East Asian ancestry individuals	19,636 East Asian ancestry individuals	7p22.3	UNCX	rs10277115-T	0.35	1E-10		0.0058	[0.0040-0.0076] ml/min/1.73m2 decrease	Affymetrix, Illumina [2353587] (imputed)	N
594	chr7	1286191	1286192	rs13230509	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	7p22.3		rs13230509-C	NR	3E-58		0.0314	[0.028-0.035] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
594	chr7	1286191	1286192	rs13230509	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	7p22.3		rs13230509-C	NR	1E-40		0.0252	[0.021-0.029] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
594	chr7	1286191	1286192	rs13230509	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	7p22.3		rs13230509-C	NR	4E-125		0.0499	[0.046-0.054] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
594	chr7	1286191	1286192	rs13230509	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in non-diabetics	152,624 European ancestry individuals, 36,369 African American individuals	NA	7p22.3	UNCX	rs13230509-C	0.621	2E-25		0.586	[0.48-0.7] unit decrease	Affymetrix [NR] (imputed)	N
594	chr7	1286191	1286192	rs13230509	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	7p22.3	UNCX	rs13230509-C	0.686	4E-37	(EA)	0.0055	[0.0047-0.0063] unit decrease	Affymetrix [NR] (imputed)	N
594	chr7	1286191	1286192	rs13230509	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	7p22.3	UNCX	rs13230509-C	0.593	2E-48		0.006	[0.0052-0.0068] unit decrease	Affymetrix [NR] (imputed)	N
594	chr7	1286191	1286192	rs13230509	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	7p22.3	UNCX	rs13230509-C	0.686	7E-62		0.0055	[0.0047-0.0063] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
594	chr7	1286216	1286217	rs13230519	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	7p22.3		rs13230519-?	NR	1E-9				NR [~ 8900000] (imputed)	N
594	chr7	1286243	1286244	rs13230625	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Chronic kidney disease	64,164 European and unknown ancestry cases, 561,055 European and unknown ancestry controls	NA	7p22.3	UNCX	rs13230625-A	0.53	9E-13		1.0681	[1.049-1.0875]	Affymetrix, Illumina [9585923] (imputed)	N
594	chr7	1286243	1286244	rs13230625	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	7p22.3	UNCX	rs13230625-A	0.5269	7E-57		0.0139	[0.012-0.016] unit increase	Affymetrix, Illumina [8176554] (imputed)	N
594	chr7	1286243	1286244	rs13230625	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals	at least 101,293 European ancestry individuals	7p22.3	UNCX, MICALL2	rs13230625-A	0.318	5E-10	(Japanese)	0.027	[0.019-0.035] unit increase	Illumina [5864938] (imputed)	N
594	chr7	1286566	1286567	rs62435145	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Creatinine levels	110,051 European ancestry individuals	NA	7p22.3		rs62435145-G	0.308656	2E-23		0.0394349	[0.032-0.047] unit decrease	NR [11722792] (imputed)	N
594	chr7	1286566	1286567	rs62435145	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	7p22.3		rs62435145-T	NR	2E-127		0.0426	[0.039-0.046] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
594	chr7	1286566	1286567	rs62435145	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	150,266 East Asian ancestry individuals	NA	7p22.3		rs62435145-T	0.313431	4E-44		0.0431164	[0.037-0.049] unit increase	Illumina [13478778] (imputed)	N
594	chr7	1286566	1286567	rs62435145	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	7p22.3		rs62435145-T	NR	1E-49		0.0265	[0.023-0.03] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
594	chr7	1286566	1286567	rs62435145	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	7p22.3		rs62435145-T	NR	4E-50		0.0273	[0.024-0.031] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
594	chr7	1286566	1286567	rs62435145	33418499	Lin BM	2021-01-06	EBioMedicine	Whole genome sequence analyses of eGFR in 23,732 people representing multiple ancestries in the NHLBI trans-omics for precision medicine (TOPMed) consortium.	Estimated glomerular filtration rate	8,459 African American individuals, 1,182 Hispanic/Latino individuals, 2,208 East Asian ancestry individuals, 11,837 European ancestry individuals, 46 Native American ancestry individuals	2,637 East Asian ancestry individuals, 6,767 Hispanic/Latino individuals, 3,031 Native American ancestry individuals	7p22.3		rs62435145-?	NR	4E-8		0.48414308	[0.31-0.66] ml/min/1.73 m2 decrease	NR [43622178]	N
594	chr7	1286566	1286567	rs62435145	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	7p22.3		rs62435145-T	0.690615	3E-48		0.03588867	[0.031-0.041] unit decrease	Affymetrix [93095623] (imputed)	N
594	chr7	1286566	1286567	rs62435145	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	7p22.3		rs62435145-T	0.690583	4E-50		0.036724653	[0.032-0.042] unit decrease	Affymetrix [93095623] (imputed)	N
594	chr7	1286566	1286567	rs62435145	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	7p22.3		rs62435145-T	0.690591	1E-54		0.038387224	[0.034-0.043] unit decrease	Affymetrix [93095623] (imputed)	N
594	chr7	1286566	1286567	rs62435145	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p22.3	NR	rs62435145-T	0.592242	5E-73				Affymetrix, Illumina [24332387] (imputed)	N
594	chr7	1286566	1286567	rs62435145	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	7p22.3	NR	rs62435145-T	0.690562	7E-57		0.034485	[0.03-0.039] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
594	chr7	1286566	1286567	rs62435145	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p22.3	NR	rs62435145-T	0.594654	2E-78				Affymetrix, Illumina [24653286] (imputed)	N
594	chr7	1286566	1286567	rs62435145	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	7p22.3	NR	rs62435145-T	0.690307	9E-63		0.036255	[0.032-0.041] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
594	chr7	1286566	1286567	rs62435145	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p22.3	NR	rs62435145-T	0.596866	4E-87				Affymetrix, Illumina [24558453] (imputed)	N
594	chr7	1286566	1286567	rs62435145	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	7p22.3	NR	rs62435145-T	0.690318	7E-68		0.037815	[0.034-0.042] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
594	chr7	1286566	1286567	rs62435145	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	7p22.3	intergenic	rs62435145-G		4E-40		0.032	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
594	chr7	1286566	1286567	rs62435145	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	7p22.3	UNCX	rs62435145-T	0.5316	4E-26		0.0402	[0.033-0.048] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
594	chr7	1286566	1286567	rs62435145	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	7p22.3	UNCX	rs62435145-T	0.6891	2E-16		0.041662	[0.032-0.052] mg/dL increase	Affymetrix, Illumina [8217339] (imputed)	N
594	chr7	1286566	1286567	rs62435145	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	7p22.3	NR	rs62435145-T	0.5228	7E-12	(women)	0.0392	[0.028-0.05] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
594	chr7	1286566	1286567	rs62435145	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	7p22.3	NR	rs62435145-T	0.4941	2E-12	(men)	0.0434	[0.031-0.055] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
594	chr7	1286566	1286567	rs62435145	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in diabetes	70,762 European ancestry individuals, 20,967 African American individuals	NA	7p22.3	UNCX	rs62435145-T	0.597	2E-11		0.643	[0.45-0.83] unit decrease	Affymetrix [NR] (imputed)	N
594	chr7	1286566	1286567	rs62435145	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	7p22.3	UNCX	rs62435145-T	0.5913	5E-91		0.006	[0.0052-0.0068] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
594	chr7	1286566	1286567	rs62435145	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	165,726 East Asian ancestry individuals	NA	7p22.3	UNCX	rs62435145-T	0.3221	2E-24		0.0075	[0.0061-0.0089] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
594	chr7	1286566	1286567	rs62435145	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	7p22.3	UNCX	rs62435145-G	0.5746	5E-43		13.754	NR z score increase	Illumina [26237160] (imputed)	N
594	chr7	1286566	1286567	rs62435145	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	7p22.3	UNCX	rs62435145-T	0.48	2E-39		0.594	[0.39-0.8] ml/min/1.73m2 decrease	Affymetrix, Illumina [at least 5248638] (imputed)	N
594	chr7	1286566	1286567	rs62435145	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	7p22.3		rs62435145-?	NR	3E-45				NR [~ 8900000] (imputed)	N
594	chr7	1286566	1286567	rs62435145	28452372	Gorski M	2017-04-28	Sci Rep	1000 Genomes-based meta-analysis identifies 10 novel loci for kidney function.	Glomerular filtration rate (creatinine)	110,517 European ancestry individuals		7p22.3	UNCX	rs62435145-T	NR	3E-8		0.0077	[0.0052-0.0102] unit decrease	Affymetrix, Illumina [up to 10971307] (imputed)	N
594	chr7	1286566	1286567	rs62435145	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	7p22.3	intergenic	rs62435145-T	0.6916	6E-16		0.03159166	[0.024-0.039] unit decrease	Affymetrix [~ 2500000] (imputed)	N
594	chr7	1286566	1286567	rs62435145	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	7p22.3	intergenic	rs62435145-T	0.6915	7E-14		0.02919609	[0.022-0.037] unit decrease	Affymetrix [~ 2500000] (imputed)	N
594	chr7	1286566	1286567	rs62435145	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	7p22.3	intergenic	rs62435145-T	0.6915	7E-16		0.0313426	[0.024-0.039] unit decrease	Affymetrix [~ 2500000] (imputed)	N
594	chr7	1286566	1286567	rs62435145	27588450	Mahajan A	2016-09-01	Am J Hum Genet	Trans-ethnic Fine Mapping Highlights Kidney-Function Genes Linked to Salt Sensitivity.	Glomerular filtration rate	23,553 European ancestry individuals, 23,536 Japanese individuals, 16,325 Hispanic individuals, 8,224 African American individuals	NA	7p22.3	UNCX	rs62435145-T	NR	5E-15		1.092	[0.82-1.36] unit decrease	Affymetrix, Illumina [at least 6581000] (imputed)	N
594	chr7	1286566	1286567	rs62435145	27588450	Mahajan A	2016-09-01	Am J Hum Genet	Trans-ethnic Fine Mapping Highlights Kidney-Function Genes Linked to Salt Sensitivity.	Glomerular filtration rate	23,553 European ancestry individuals, 23,536 Japanese individuals, 16,325 Hispanic individuals, 8,224 African American individuals	NA	7p22.3	UNCX	rs62435145-T	0.49	4E-6	(Hispanic)	1.208	[0.7-1.72] unit decrease	Affymetrix, Illumina [at least 6581000] (imputed)	N
594	chr7	1286566	1286567	rs62435145	27588450	Mahajan A	2016-09-01	Am J Hum Genet	Trans-ethnic Fine Mapping Highlights Kidney-Function Genes Linked to Salt Sensitivity.	Glomerular filtration rate	23,553 European ancestry individuals, 23,536 Japanese individuals, 16,325 Hispanic individuals, 8,224 African American individuals	NA	7p22.3	UNCX	rs62435145-T	0.32	1E-8	(Japanese)	1.611	[1.06-2.16] unit decrease	Affymetrix, Illumina [at least 6581000] (imputed)	N
594	chr7	1286911	1286912	rs11761603	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	152,447 East Asian ancestry individuals	NA	7p22.3		rs11761603-C	0.318175	5E-20		0.0306418	[0.024-0.037] unit decrease	Illumina [13478948] (imputed)	N
594	chr7	1286911	1286912	rs11761603	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	153,015 East Asian ancestry individuals	NA	7p22.3		rs11761603-C	0.317795	4E-21		0.032168	[0.025-0.039] unit decrease	Illumina [13478961] (imputed)	N
594	chr7	1288638	1288639	rs13241427	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in overweight individuals	up to 10,058 European ancestry male individuals, up to 7,189 European ancestry female individuals	NA	7p22.3	UNCX	rs13241427-G	0.2	1E-6		0.116	[0.069-0.163] kg/m2 decrease	Affymetrix, Illumina [at least 188473] (imputed)	N
594	chr7	1288638	1288639	rs13241427	21897333	Irvin MR	2011-12-01	Pharmacogenet Genomics	Genes linked to energy metabolism and immunoregulatory mechanisms are associated with subcutaneous adipose tissue distribution in HIV-infected men.	Fat distribution (HIV)	192 European ancestry male cases	NA	7p22.3	UNCX	rs13241427-C	0.22	4E-7	(univariate, upper trunk)			Illumina [319818]	N
594	chr7	1289278	1289279	rs13242133	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter alcoholic beverage consumption	336,448 European ancestry individuals	39,924 European ancestry individuals	7p22.3	UNCX	rs13242133-G	0.2051	8E-6		0.0058	[0.0033-0.0083] unit increase	Affymetrix [~ 7740000] (imputed)	N
594	chr7	1293009	1293010	rs1533988	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	148,767 East Asian ancestry individuals	NA	7p22.3		rs1533988-T	0.34023	1E-38		0.0476101	[0.04-0.055] unit increase	Illumina [13478792] (imputed)	N
594	chr7	1293009	1293010	rs1533988	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Red blood cell count	108,794 Japanese ancestry individuals	NA	7p22.3	UNCX, MICALL2	rs1533988-?	NR	3E-12		0.03621	[0.026-0.046] unit decrease novel	Illumina [6108953] (imputed)	N
594	chr7	1293009	1293010	rs1533988	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Hemoglobin	108,769 Japanese ancestry individuals	NA	7p22.3	UNCX, MICALL2	rs1533988-?	NR	2E-14		0.03958	[0.029-0.05] unit decrease novel	Illumina [6108953] (imputed)	N
594	chr7	1293009	1293010	rs1533988	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Hematocrit	108,757 Japanese ancestry individuals	NA	7p22.3	UNCX, MICALL2	rs1533988-?	NR	1E-14		0.03983	[0.03-0.05] unit decrease novel	Illumina [6108953] (imputed)	N
594	chr7	1293009	1293010	rs1533988	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Glomerular filtration rate	143,658 Japanese ancestry individuals	NA	7p22.3	UNCX, MICALL2	rs1533988-?	NR	9E-39		0.0595	[0.051-0.068] unit decrease novel	Illumina [6108953] (imputed)	N
594	chr7	1293009	1293010	rs1533988	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Creatinine levels	142,097 Japanese ancestry individuals	NA	7p22.3	UNCX, MICALL2	rs1533988-?	NR	1E-37		0.0572	[0.048-0.066] unit increase novel	Illumina [6108953] (imputed)	N
594	chr7	1293009	1293010	rs1533988	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Blood urea nitrogen levels	139,818 Japanese ancestry individuals	NA	7p22.3	UNCX, MICALL2	rs1533988-?	NR	2E-31		0.0505	[0.042-0.059] unit increase novel	Illumina [6108953] (imputed)	N
594	chr7	1295544	1295545	rs73670554	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	7p22.3	NR	rs73670554-T	NR	6E-10		0.0268	[0.018-0.035] unit decrease	Affymetrix [9000000] (imputed)	N
594	chr7	1295544	1295545	rs73670554	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	7p22.3	NR	rs73670554-T	NR	2E-10		0.0273	[0.019-0.036] unit increase	Affymetrix [9000000] (imputed)	N
594	chr7	1295544	1295545	rs73670554	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	7p22.3	NR	rs73670554-T	NR	1E-10		0.0277	[0.019-0.036] unit decrease	Affymetrix [9000000] (imputed)	N
594	chr7	1298447	1298448	rs4724828	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	129,405 East Asian ancestry individuals	NA	7p22.3		rs4724828-T	0.410863	8E-15		0.0287803	[0.022-0.036] unit increase	Illumina [13475706] (imputed)	N
594	chr7	1298447	1298448	rs4724828	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	7p22.3	UNCX	rs4724828-T	0.4167	8E-11	(East Asian)	0.0443	[0.031-0.058] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
594	chr7	1298447	1298448	rs4724828	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum uric acid levels	109,029 Japanese ancestry individuals	NA	7p22.3	UNCX, MICALL2	rs4724828-?	NR	3E-8		0.02793	[0.018-0.038] unit increase novel	Illumina [6108953] (imputed)	N
594	chr7	1302135	1302136	rs62436674	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	7p22.3	NR	rs62436674-T	NR	4E-22		0.0305	[0.024-0.037] unit decrease	Affymetrix [9000000] (imputed)	N
594	chr7	1302135	1302136	rs62436674	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	7p22.3	NR	rs62436674-T	NR	6E-13		0.0227	[0.017-0.029] unit decrease	Affymetrix [9000000] (imputed)	N
594	chr7	1302135	1302136	rs62436674	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	7p22.3	NR	rs62436674-T	NR	1E-20		0.0293	[0.023-0.035] unit increase	Affymetrix [9000000] (imputed)	N
594	chr7	1302135	1302136	rs62436674	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	7p22.3	NR	rs62436674-T	NR	7E-10		0.0194	[0.013-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
594	chr7	1302135	1302136	rs62436674	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	7p22.3	NR	rs62436674-T	NR	1E-21		0.03	[0.024-0.036] unit decrease	Affymetrix [9000000] (imputed)	N
595	chr7	1317166	1317167	rs73262722	30014611	Weiss RB	2018-07-16	Ann Neurol	Long-range genomic regulators of THBS1 and LTBP4 modify disease severity in Duchenne muscular dystrophy.	Age at loss of ambulation in Duchenne muscular dystrophy	243 European ancestry cases, 10 cases	NA	7p22.3	NR	rs73262722-?	NR	9E-6				Illumina [1735619]	N
595	chr7	1317166	1317167	rs73262722	30014611	Weiss RB	2018-07-16	Ann Neurol	Long-range genomic regulators of THBS1 and LTBP4 modify disease severity in Duchenne muscular dystrophy.	Age at loss of ambulation in Duchenne muscular dystrophy	243 European ancestry cases, 10 cases	NA	7p22.3	NR	rs73262722-?	NR	2E-6	(EA)			Illumina [1735619]	N
595	chr7	1380873	1380874	rs1574277	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	7p22.3	NR	rs1574277-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
595	chr7	1381481	1381482	rs2361715	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7p22.3		rs2361715-?	NR	1E-8				NR [~ 8900000] (imputed)	N
595	chr7	1382157	1382158	rs113595255	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	7p22.3	AC073094.4	rs113595255-A	0.0751	6E-6		0.0607	[0.034-0.087] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
595	chr7	1382645	1382646	rs112716420	33239738	Didriksen M	2020-11-25	Commun Biol	Large genome-wide association study identifies three novel risk variants for restless legs syndrome.	Restless legs syndrome	10,257 European ancestry cases, 470,725 European ancestry controls	up to 15,126 European ancestry cases, up to 95,725 European ancestry controls	7p22.3	MICALL2, UNCX	rs112716420-G	0.08	2E-18		1.25	[1.19-1.31]	Affymetrix, Illumina [15838848] (imputed)	N
595	chr7	1428475	1428476	rs11514810	28416812	Yang L	2017-04-18	Mol Psychiatry	A new locus regulating MICALL2 expression was identified for association with executive inhibition in children with attention deficit hyperactivity disorder.	Executive inhibition (Stroop WIT and CIT) in attention deficit hyperactivity disorder	up to 780 Han Chinese ancestry child or adolescent individuals	up to 922 Han Chinese ancestry child or adolescent individuals	7p22.3	MICALL2, INTS1, PSMG3	rs11514810-T	NR	5E-9	(Stroop WIT)	9.31	unit increase	Affymetrix [at least 644166] (imputed)	N
596	chr7	1483897	1483898	rs28403420	31545351	Irvin MR	2019-09-23	Am J Hypertens	Genome wide association study of apparent treatment resistant hypertension in the CHARGE consortium: The CHARGE Pharmacogenetics Working Group.	Resistance to antihypertensive treatment in hypertension	931 European ancestry cases, 228 African American ancestry cases, 5,266 European ancestry controls, 1,817 African American ancestry controls	NA	7p22.3	MICALL2	rs28403420-A	NR	4E-7		2.2	[1.62-2.98]	Affymetrix, Illumina [NR] (imputed)	N
597	chr7	1580920	1580921	rs3735656	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7p22.3		rs3735656-?	NR	6E-15				NR [~ 8900000] (imputed)	N
597	chr7	1581516	1581517	rs10226620	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	7p22.3		rs10226620-C	NR	6E-15		0.0106	[0.0079-0.0133] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
597	chr7	1607629	1607630	rs62436871	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		PSMG3	rs62436871-?	NR	1E-8	(male)	1.87048	[NR] unit increase	Affymetrix [NR] (imputed)	N
597	chr7	1618493	1618494	rs111812602	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		PSMG3-AS1	rs111812602-?	NR	1E-8	(male)	1.8706	[NR] unit increase	Affymetrix [NR] (imputed)	N
597	chr7	1642195	1642196	rs113772882	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	7p22.3		rs113772882-?	NR	2E-10				NR [~ 8900000] (imputed)	N
597	chr7	1644044	1644045	rs117975899	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels	3,806 African American individuals	NA	7p22.3		rs117975899-?	NR	2E-6		0.35	[0.21-0.49] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
597	chr7	1651899	1651900	rs12539603	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	7p22.3	NR	rs12539603-?	NR	5E-7		0.141368	[0.086-0.197] unit decrease	NR [13958389] (imputed)	N
597	chr7	1664349	1664350	rs13239071	29503163	Yu H	2018-03-01	Lancet Psychiatry	Five novel loci associated with antipsychotic treatment response in patients with schizophrenia: a genome-wide association study.	Response to perphenazine in schizophrenia	193 Han Chinese ancestry cases	NA	7p22.3	TFAMP1	rs13239071-G	NR	2E-6		16.8758	[10.21-23.54] unit decrease	Illumina [6097251] (imputed)	N
597	chr7	1665338	1665339	rs10952199	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	7p22.3	PSMG3	rs10952199-T	0.4283	6E-10		0.013566539	[0.0093-0.0179] unit decrease	Affymetrix [11514654] (imputed)	N
597	chr7	1675620	1675621	rs10255516	30617275	Erzurumluoglu AM	2019-01-07	Mol Psychiatry	Meta-analysis of up to 622,409 individuals identifies 40 novel smoking behaviour associated genetic loci.	Smoking initiation	324,851 European ancestry individuals, 21,962 South Asian ancestry individuals	up to 275,596 European ancestry individuals	7p22.3	ELFN1	rs10255516-G	0.33	3E-10		0.0139	[0.008-0.0198] unit decrease (replication)	Affymetrix, Illumina [up to 1207583] (imputed)	N
597	chr7	1682056	1682057	rs2398737	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking initiation	842,717 European ancestry individuals	NA	7p22.3	TFAMP1, ELFN1	rs2398737-G		3E-12		0.976	[NR]	Affymetrix [up to 79000000] (imputed)	N
597	chr7	1688368	1688369	rs6464024	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	7p22.3		rs6464024-?	NR	2E-8				NR [~ 8900000] (imputed)	N
597	chr7	1701591	1701592	rs10255004	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking initiation (ever regular vs never regular)	up to 433,216 European ancestry individuals	NA	7p22.3	TFAMP1	rs10255004-T	0.432	8E-11		0.015	[0.01-0.02] unit decrease	Illumina [~ 250000] (imputed)	N
597	chr7	1703674	1703675	rs10272990	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	7p22.3	NR	rs10272990-C	0.328	2E-15		0.0092637	[0.007-0.0116] unit decrease	NR [9732723] (imputed)	N
597	chr7	1703674	1703675	rs10272990	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	7p22.3	NR	rs10272990-C	0.327622	1E-14	(Conditioned on chr7:1870794)	0.020921536	[0.016-0.026] unit decrease	NR [~ 10000000] (imputed)	N
598	chr7	1731865	1731866	rs12670854	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	7p22.3	TFAMP1, ELFN1	rs12670854-A		1E-8		0.36	unit increase	Affymetrix [at least 2696785] (imputed)	N
598	chr7	1731865	1731866	rs12670854	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	7p22.3	TFAMP1, ELFN1	rs12670854-A		9E-6		0.171	unit increase	Affymetrix [at least 2696785] (imputed)	N
598	chr7	1754552	1754553	rs12531839	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	7p22.3	ELFN1	rs12531839-C	0.236835347777814	1E-6		0.0030449	[NR] unit increase	Affymetrix [> 30000000] (imputed)	N
598	chr7	1769351	1769352	rs115351876	31049640	Chen J	2019-05-02	Diabetologia	Genome-wide association study of type 2 diabetes in Africa.	Type 2 diabetes	2,633 African ancestry cases, 1,714 African ancestry controls	NA	7p22.3	ELFN1	rs115351876-T	0.033	3E-6		1.69	[1.36-2.10]	Affymetrix, Illumina [12148595] (imputed)	N
598	chr7	1792395	1792396	rs76720445	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	7p22.3	NR	rs76720445-?	NR	3E-6	(Native Hawaiian)	0.7911	[NR] unit increase	Illumina [up to 11892802] (imputed)	N
598	chr7	1800695	1800696	rs10275833	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	7p22.3	Intergenic	rs10275833-T	0.6801	2E-8		0.0135	[0.0088-0.0182] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
598	chr7	1805926	1805927	rs11763008	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	7p22.3		rs11763008-C	0.862	2E-9		0.01	[0.0061-0.0139] unit increase	NR [NR] (imputed)	N
598	chr7	1820157	1820158	rs6965555	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Intake of total sugars	174,424 European ancestry individuals	NA	7p22.3	AC074389.1	rs6965555-G	0.23	6E-6		0.89	[0.5-1.28] g/day increase	Affymetrix [10353649] (imputed)	N
598	chr7	1823264	1823265	rs62435650	33608531	Wu Y	2021-02-19	Nat Commun	GWAS of peptic ulcer disease implicates Helicobacter pylori infection, other gastrointestinal disorders and depression.	Gastroesophageal reflux disease, peptic ulcer disease and/or corresponding medications and treatment	90,175 European ancestry cases, 366,152 European ancestry controls	NA	7p22.3	NR	rs62435650-A	0.8	4E-9		1.04		NR [8546065] (imputed)	N
598	chr7	1827568	1827569	rs11760284	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	7p22.3	NR	rs11760284-?	NR	4E-9				Affymetrix [~ 8270000] (imputed)	N
599	chr7	1852062	1852063	rs6955410	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	7p22.3	MAD1L1	rs6955410-G	0.757332	3E-6		1.04	[1.03-1.06]	NR [8126035] (imputed)	N
599	chr7	1852752	1852753	rs11760633	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	7p22.3	MAD1L1	rs11760633-T	0.165	4E-6		0.04	[0.022-0.058] unit decrease	Affymetrix [7947838] (imputed)	N
599	chr7	1854158	1854159	rs73046311	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	7p22.3	NR	rs73046311-C	0.201789	4E-9		0.051351365	[0.034-0.068] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
599	chr7	1856272	1856273	rs11772232	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	7p22.3	Intergenic	rs11772232-T	0.1709	7E-16	(MTAG)	0.0177	[0.013-0.022] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
599	chr7	1856272	1856273	rs11772232	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	7p22.3		rs11772232-T	0.1691	1E-20		0.0177	[0.014-0.021] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
599	chr7	1856272	1856273	rs11772232	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	7p22.3	Intergenic	rs11772232-T	0.1691	8E-23	(MTAG)	0.0174	[0.014-0.021] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
599	chr7	1858724	1858725	rs6963853	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	7p22.3		rs6963853-?	NR	3E-10				NR [~ 8900000] (imputed)	N
599	chr7	1858724	1858725	rs6963853	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	7p22.3	MAD1L1	rs6963853-A	0.4442	5E-9		0.1966	[0.13-0.26] mmHg increase	Affymetrix [NR] (imputed)	N
599	chr7	1862403	1862404	rs13239969	27089180	Day FR	2016-04-18	Nat Genet	Physical and neurobehavioral determinants of reproductive onset and success.	Age at first sexual intercourse	59,357 British ancestry males, 66,310 British ancestry females	NA	7p22.3	MAD1L1	rs13239969-C	0.599389	1E-8		0.0225248	[0.015-0.03] unit increase	Affymetrix [641018] (imputed)	N
599	chr7	1866930	1866931	rs13234909	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	7p22.3	MAD1L1	rs13234909-A	0.3966	4E-9		0.01210418	[0.0081-0.0161] unit increase	Affymetrix [11514654] (imputed)	N
599	chr7	1870793	1870794	rs6948707	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking initiation	842,717 European ancestry individuals	NA	7p22.3	MAD1L1	rs6948707-G		2E-11		1.024	[NR]	Affymetrix [up to 79000000] (imputed)	N
599	chr7	1870793	1870794	rs6948707	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	7p22.3	NR	rs6948707-G	0.419	4E-21		0.024347221	[0.019-0.029] unit increase	NR [~ 10000000] (imputed)	N
599	chr7	1872920	1872921	rs4721089	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	7p22.3	NR	rs4721089-C	0.2432	8E-10		0.034	[0.023-0.045] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
599	chr7	1872920	1872921	rs4721089	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	7p22.3	NR	rs4721089-?	NR	7E-14				Affymetrix [~ 8270000] (imputed)	N
599	chr7	1872920	1872921	rs4721089	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	7p22.3		rs4721089-?	NR	5E-14				NR [~ 8900000] (imputed)	N
599	chr7	1872920	1872921	rs4721089	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	7p22.3	NA	rs4721089-T	0.783	6E-13		0.0167	[0.012-0.021] unit increase	NR [~ 27400000] (imputed)	N
599	chr7	1873405	1873406	rs10268294	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	7p22.3		rs10268294-A	NR	3E-8		0.0454	[0.03-0.061] unit increase	Affymetrix, Illumina [25845091] (imputed)	N
599	chr7	1873755	1873756	rs10268797	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	7p22.3	MAD1L1	rs10268797-?	NR	5E-8		0.0359225	[0.023-0.049] unit increase	Illumina [4804024] (imputed)	N
599	chr7	1876198	1876199	rs6460944	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	7p22.3		rs6460944-C	0.592	2E-23		0.012	[0.01-0.014] unit decrease	NR [NR] (imputed)	N
599	chr7	1876198	1876199	rs6460944	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	7p22.3	NR	rs6460944-T	0.42	2E-27		0.0118692	[0.0097-0.014] unit increase	NR [9732723] (imputed)	N
599	chr7	1877310	1877311	rs4721096	31527586	An J	2019-09-16	Nat Commun	Gastroesophageal reflux GWAS identifies risk loci that also associate with subsequent severe esophageal diseases.	Gastroesophageal reflux disease	80,265 European and unknown ancestry cases, 305,011 European and unknown ancestry controls	NA	7p22.3	MAD1L1, AK127048, ELFN1	rs4721096-C	NR	3E-9		1.043416	[1.03-1.06]	Affymetrix, Illumina [up to 7600000] (imputed)	N
599	chr7	1878452	1878453	rs1078112	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	7p22.3	MAD1L1	rs1078112-A	0.3908	1E-8		0.014967991	[0.0098-0.0201] unit decrease	Affymetrix [~ 11515000] (imputed)	N
599	chr7	1883475	1883476	rs10807751	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	7p22.3	NR	rs10807751-C	0.541	4E-22		0.0141731	[0.011-0.017] unit increase	NR [9732723] (imputed)	N
599	chr7	1885177	1885178	rs140364877	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	7p22.3	MAD1L1, MIR4655	rs140364877-?		2E-11		1.0869565	[1.06-1.11]	Affymetrix, Illumina [NR]	N
599	chr7	1885599	1885600	rs58673065	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glutamine levels	114,751 European ancestry individuals	NA	7p22.3		rs58673065-A	0.77074	1E-9		0.0298844	[0.02-0.039] unit decrease	NR [11722792] (imputed)	N
599	chr7	1886534	1886535	rs6952808	20889312	Wang KS	2010-10-01	Schizophr Res	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	7p22.3	NR	rs6952808-?	NR	2E-6		1.2541	[NR]	Affymetrix [722112]	N
599	chr7	1896412	1896413	rs4236274	27329760	Hou L	2016-06-21	Hum Mol Genet	Genome-wide association study of 40,000 individuals identifies two novel loci associated with bipolar disorder.	Bipolar disorder	7,647 European ancestry cases, 27,303 European ancestry controls	2,137 European ancestry cases, 3,168 European ancestry controls	7p22.3	MAD1L1	rs4236274-G	0.39	8E-12		1.15	[1.10-1.20]	Affymetrix, Illumina [9692718] (imputed)	N
599	chr7	1899446	1899447	rs11770148	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	7p22.3		rs11770148-?	NR	5E-11				NR [~ 8900000] (imputed)	N
599	chr7	1909478	1909479	rs12699415	31710517	Allen RJ	2019-11-11	Am J Respir Crit Care Med	Genome-Wide Association Study of Susceptibility to Idiopathic Pulmonary Fibrosis.	Idiopathic pulmonary fibrosis	2,668 European ancestry cases, 8,591 European ancestry controls	1,456 European ancestry cases, 11,874 European ancestry controls	7p22.3	MAD1L1	rs12699415-A	0.42	9E-20		1.28	[1.21-1.35]	Affymetrix, Illumina [10790934] (imputed)	N
599	chr7	1910449	1910450	rs79311676	26503814	Hardin M	2016-10-27	Pharmacogenomics J	A genome-wide analysis of the response to inhaled ?2-agonists in chronic obstructive pulmonary disease.	Response to bronchodilator in chronic obstructive pulmonary disease (change in FEV1)	5,766 European ancestry cases, 811 African American cases	NA	7p22.3	MAD1L1	rs79311676-G	NR	2E-6	(BDRPRED, EA)	0.76	[0.45-1.07] unit increase	Illumina [NR] (imputed)	N
599	chr7	1911280	1911281	rs62435159	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	7p22.3		rs62435159-A	NR	6E-9		0.0165	[0.011-0.022] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
599	chr7	1912221	1912222	rs4721135	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	7p22.3	MAD1L1	rs4721135-?		2E-15				Affymetrix, Illumina [NR] (imputed)	N
599	chr7	1912221	1912222	rs4721135	20834067	Yashin AI	2010-09-01	Aging (Albany NY)	Joint influence of small-effect genetic variants on human longevity.	Longevity	1,173 individuals	NA	7p22.3	MAD1L1	rs4721135-?	NR	1E-6	(less than or equal to)			NR [~ 550000]	N
599	chr7	1914349	1914350	rs60238952	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	7p22.3	NR	rs60238952-G	NR	3E-9		0.0174	[0.012-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
599	chr7	1914476	1914477	rs10950415	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	7p22.3	MAD1L1	rs10950415-A	0.5549	1E-8		0.013583914	[0.0089-0.0182] unit increase	Affymetrix [11515109] (imputed)	N
599	chr7	1920825	1920826	rs10275045	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Streptococcus)	1,068 Japanese ancestry individuals	NA	7p22.3	MAD1L1	rs10275045-T	0.37	6E-6		0.295	[0.17-0.42] unit increase	Illumina [6380737] (imputed)	N
599	chr7	1920825	1920826	rs10275045	24280982	Ruderfer DM	2013-11-26	Mol Psychiatry	Polygenic dissection of diagnosis and clinical dimensions of bipolar disorder and schizophrenia.	Schizophrenia or bipolar disorder	Up to 4,528 European ancestry schizophrenia cases, up to 4,841 schizophrenia cases, up to 7,362 European ancestry bipolar disorder cases, up to 3,048 bipolar disorder cases, up to 11,637 European ancestry controls, up to 7,786 controls	NA	7p22.3	MAD1L1	rs10275045-?	NR	2E-6	(SCZ vs. controls)			Affymetrix, Illumina [~ 1100000] (imputed)	N
599	chr7	1920825	1920826	rs10275045	24280982	Ruderfer DM	2013-11-26	Mol Psychiatry	Polygenic dissection of diagnosis and clinical dimensions of bipolar disorder and schizophrenia.	Schizophrenia or bipolar disorder	Up to 4,528 European ancestry schizophrenia cases, up to 4,841 schizophrenia cases, up to 7,362 European ancestry bipolar disorder cases, up to 3,048 bipolar disorder cases, up to 11,637 European ancestry controls, up to 7,786 controls	NA	7p22.3	MAD1L1	rs10275045-?		2E-9	(SCZ or BP vs. controls)			Affymetrix, Illumina [~ 1100000] (imputed)	N
599	chr7	1922619	1922620	rs55956596	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	7p22.3		rs55956596-T	NR	2E-10		0.0147	[0.01-0.019] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
599	chr7	1928158	1928159	rs4513875	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	7p22.3	NR	rs4513875-T	NR	1E-8		1.041	[1.03-1.06]	Affymetrix, Illumina [29235255] (imputed)	N
599	chr7	1929409	1929410	rs112627544	32723796	Mehta SD	2020-07-28	mSystems	Host Genetic Factors Associated with Vaginal Microbiome Composition in Kenyan Women.	Vaginal microbiome composition (Shannon diversity index)	171 Kenyan ancestry individuals	NA	7p22.3	MAD1L1	rs112627544-T	0.42	9E-6		0.47	NR unit decrease	Illumina [336151] (imputed)	N
599	chr7	1932373	1932374	rs117829095	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7p22.3		rs117829095-?	NR	1E-8				NR [~ 8900000] (imputed)	N
599	chr7	1932888	1932907	rs202220630	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	7p22.3	MAD1L1	rs202220630-?	NR	8E-6		0.135426	[0.076-0.195] unit increase	Illumina [at least 950000] (imputed)	N
599	chr7	1937260	1937261	rs10267593	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	7p22.3	MAD1L1	rs10267593-A	0.2012	2E-8		0.036	[0.023-0.049] unit decrease	Affymetrix [at least 7947838] (imputed)	N
599	chr7	1937260	1937261	rs10267593	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	7p22.3	MAD1L1	rs10267593-A	0.2052	5E-9		0.0412	[0.027-0.055] unit decrease	NR [8041861] (imputed)	N
599	chr7	1943667	1943668	rs371233761	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	7p22.3	MAD1L1	rs371233761-C	0.059628	7E-9		0.03387544	[0.022-0.045] unit increase	Affymetrix [93095623] (imputed)	N
599	chr7	1944536	1944537	rs527510716	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer (advanced)	15,167 European ancestry cases, 58,308 European ancestry controls	NA	7p22.3	MAD1L1	rs527510716-C	NR	3E-7		1.1	[NR]	Illumina [20370935] (imputed)	N
599	chr7	1944536	1944537	rs527510716	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	7p22.3	MAD1L1	rs527510716-C	0.24	5E-8		1.06	[1.04-1.08]	Illumina [20370935] (imputed)	N
599	chr7	1944590	1944591	rs10264573	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	7p22.3		rs10264573-A	0.9446	4E-8		0.0175	[0.011-0.024] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
599	chr7	1944895	1944896	rs377694807	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	7p22.3	MAD1L1	rs377694807-C	0.462159	7E-15		0.0164411	[0.012-0.021] unit decrease	NR [16516521] (imputed)	N
599	chr7	1947894	1947895	rs6970796	32723796	Mehta SD	2020-07-28	mSystems	Host Genetic Factors Associated with Vaginal Microbiome Composition in Kenyan Women.	Vaginal microbiome composition (Shannon diversity index)	171 Kenyan ancestry individuals	NA	7p22.3	MAD1L1	rs6970796-T	0.36	2E-6		0.5	NR unit decrease	Illumina [336151] (imputed)	N
599	chr7	1950808	1950809	rs4332037	28115744	Ikeda M	2017-01-24	Mol Psychiatry	A genome-wide association study identifies two novel susceptibility loci and trans population polygenicity associated with bipolar disorder.	Bipolar disorder	2,964 Japanese ancestry case, 61,887 Japanese ancestry controls, 7,481 European ancestry cases, 9,250 European ancestry controls	NA	7p22.3	MAD1L1	rs4332037-T	NR	2E-9		1.1659197	[1.10894251242016-1.22582369222999]	Illumina [at least 6195093] (imputed)	N
599	chr7	1950808	1950809	rs4332037	21926972	Sklar P	2011-09-18	Nat Genet	Large-scale genome-wide association analysis of bipolar disorder identifies a new susceptibility locus near ODZ4.	Bipolar disorder	7,481 European ancestry cases, 9,250 European ancestry controls	4,496 European ancestry cases, 42,422 European ancestry controls	7p22.3	MAD1L1	rs4332037-T	NR	7E-6		1.11	[NR]	Affymetrix, Illumina [2415422] (imputed)	N
600	chr7	1966840	1966841	rs6978112	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	7p22.3	NR	rs6978112-T	0.4105	2E-8		1.035	[1.02-1.05]	Affymetrix, Illumina [NR] (imputed)	N
600	chr7	1968952	1968953	rs12699477	28604732	Wang Z	2017-06-12	Nat Genet	Meta-analysis of five genome-wide association studies identifies multiple new loci associated with testicular germ cell tumor.	Testicular germ cell tumor	3,558 European ancestry cases, 13,970 European ancestry controls	NA	7p22.3	MAD1L1	rs12699477-C	0.37	2E-10		1.21	1.14-1.28	Illumina [9210350] (imputed)	N
600	chr7	1968952	1968953	rs12699477	28604728	Litchfield K	2017-06-12	Nat Genet	Identification of 19 new risk loci and potential regulatory mechanisms influencing susceptibility to testicular germ cell tumor.	Testicular germ cell tumor	5,518 European ancestry cases, 19,055 European ancestry controls	1,801 European ancestry cases, 4,027 European ancestry controls	7p22.3	MAD1L1	rs12699477-C	0.39	6E-13		1.2	[1.15-1.25]	Illumina [at least 371504] (imputed)	N
600	chr7	1968952	1968953	rs12699477	23666239	Chung CC	2013-05-12	Nat Genet	Meta-analysis identifies four new loci associated with testicular germ cell tumor.	Testicular germ cell tumor	582 European ancestry male cases, 1,056 European ancestry male controls	3,560 European ancestry male cases, 8,510 European ancestry male controls	7p22.3	MAD1L1	rs12699477-C	0.38	6E-9		1.21	[1.14-1.29]	Illumina [NR]	N
600	chr7	1970765	1970766	rs11982272	33495439	Demontis D	2021-01-25	Nat Commun	Risk variants and polygenic architecture of disruptive behavior disorders in the context of attention-deficit/hyperactivity disorder.	Disruptive behavior disorder and attention deficit hyperactivity disorder	3,802 European ancestry cases, 31,305 European ancestry controls, 406 Han Chinese ancestry cases, 917 Han Chinese ancestry controls	NA	7p22.3	MAD1L1	rs11982272-T	0.78	3E-7		1.179	[1.12-1.24]	Affymetrix, Illumina, Perlegen [8285688] (imputed)	N
600	chr7	1971225	1971226	rs61409925	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms (MTAG)	955,012 individuals	NA	7p22.3	NR	rs61409925-?		4E-8				NR [520857]	N
600	chr7	1973578	1973579	rs4721217	31624269	Terao C	2019-10-17	Nat Commun	GWAS of mosaic loss of chromosome Y highlights genetic effects on blood cell differentiation.	Mosaic loss of chromosome Y (Y chromosome dosage)	95,380 Japanese men	NA	7p22.3	MAD1L1	rs4721217-T	0.42	7E-23		0.043	NR unit decrease	Illumina [9591901] (imputed)	N
600	chr7	1973578	1973579	rs4721217	31624269	Terao C	2019-10-17	Nat Commun	GWAS of mosaic loss of chromosome Y highlights genetic effects on blood cell differentiation.	Mosaic loss of chromosome Y (Y chromosome dosage)	205,011 men	NA	7p22.3	MAD1L1	rs4721217-T	0.4	3E-55		0.019	unit increase	NR [NR]	N
600	chr7	1973578	1973579	rs4721217	28346444	Wright DJ	2017-03-27	Nat Genet	Genetic variants associated with mosaic Y chromosome loss highlight cell cycle genes and overlap with cancer susceptibility.	Mosaic loss of chromosome Y (Y chromosome dosage)	67,034 European ancestry men	8,715 European ancestry men, 9,793 men	7p22.3	MAD1L1	rs4721217-T	0.4	4E-14		0.002	NR unit decrease	Affymetrix [at least 641018] (imputed)	N
600	chr7	1977905	1977906	rs4719366	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	7p22.3	MAD1L1	rs4719366-A	0.395806	1E-12		0.016395215	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
600	chr7	1978383	1978384	rs62442919	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	7p22.3	NR	rs62442919-A	0.382214	2E-23		0.00808645	[0.0064-0.0098] unit increase	Affymetrix [16582909] (imputed)	N
600	chr7	1978383	1978384	rs62442919	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	7p22.3	NR	rs62442919-A	0.381921	5E-13		0.00798518	[0.0056-0.0103] unit increase	Affymetrix [16582621] (imputed)	N
600	chr7	1978383	1978384	rs62442919	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	7p22.3	NR	rs62442919-A	0.382214	4E-12		0.00621944	[0.0043-0.0081] unit increase	Affymetrix [16582965] (imputed)	N
600	chr7	1978383	1978384	rs62442919	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	7p22.3	NR	rs62442919-A	0.381921	1E-9		0.00701723	[0.0045-0.0095] unit increase	Affymetrix [16582614] (imputed)	N
600	chr7	1979749	1979750	rs10950456	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar I disorder	14,879 European ancestry cases, 31,358 European ancestry controls	NA	7p22.3	NR	rs10950456-A	0.572	6E-9		1.0945		NR [9372253] (imputed)	N
600	chr7	1982180	1982181	rs12154473	34002096	Mullins N	2021-05-17	Nat Genet	Genome-wide association study of more than 40,000 bipolar disorder cases provides new insights into the underlying biology.	Bipolar I disorder	25,060 European ancestry cases, 449,978 European ancestry controls	NA	7p22.3	NR	rs12154473-A	0.406	9E-15		0.91156	[0.89-0.93]	Affymetrix, Illumina [7549318] (imputed)	N
600	chr7	1982180	1982181	rs12154473	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Bipolar disorder (MTAG)	at least 20,352 European ancestry cases, at least 31,358 European ancestry controls	NA	7p22.3	NR	rs12154473-A	0.4115	3E-10		0.0702696	[0.048-0.092] unit decrease	NR [NR]	N
600	chr7	1989975	1989976	rs62442924	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	7p22.3	Intergenic	rs62442924-C	0.7834	3E-10		0.0173	[0.012-0.023] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
600	chr7	1992798	1992799	rs147296048	32592749	Butler-Laporte G	2020-06-24	Clin Microbiol Infect	Elevated body-mass index is associated with an increased risk of infectious disease admissions and mortality: a mendelian randomization study.	Sepsis (28-day mortality)	210 European ancestry cases, 1,827 European ancestry controls	NA	7p22.3	MAD1L1	rs147296048-A	0.98	5E-8		0.18	[0.11-0.25] unit decrease	NR [NR]	N
600	chr7	2002732	2002733	rs11773627	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter alcoholic beverage consumption	336,448 European ancestry individuals	39,924 European ancestry individuals	7p22.3	MAD1L1	rs11773627-C	0.1971	5E-6		0.0058	[0.0033-0.0083] unit increase	Affymetrix [~ 7740000] (imputed)	N
600	chr7	2002732	2002733	rs11773627	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Alcohol consumption (drinks per week)	414,343 European ancestry individuals	NA	7p22.3	MAD1L1	rs11773627-T	0.807	9E-9		0.016232817	[0.011-0.022] unit decrease	Affymetrix [11514936] (imputed)	N
600	chr7	2004420	2004421	rs12666575	22688191	Bergen SE	2012-06-12	Mol Psychiatry	Genome-wide association study in a Swedish population yields support for greater CNV and MHC involvement in schizophrenia compared with bipolar disorder.	Schizophrenia	2,111 European ancestry cases, 2,535 European ancestry controls	11,271 European ancestry cases, 14,601 European ancestry controls	7p22.3	SNX8, NUDT1, FTSJ2, MAD1L1	rs12666575-?	NR	2E-9		1.12	[NR]	Affymetrix [745006]	N
600	chr7	2017444	2017445	rs6461049	23974872	Ripke S	2013-08-25	Nat Genet	Genome-wide association analysis identifies 13 new risk loci for schizophrenia.	Schizophrenia	5,001 European ancestry cases, 6,243 European ancestry controls, 8,832 cases, 12,067 controls	4,801 European ancestry cases, 4,741 European ancestry controls, 2,612 European and unknown ancestry cases, 15,021 European and unknown ancestry controls, 581 trios	7p22.3	SNX8, NUDT1, FTSJ2, MAD1L1	rs6461049-T	0.571	6E-13		1.107	[1.08-1.13]	Affymetrix, Illumina [9871789]	N
600	chr7	2018822	2018823	rs3996330	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	7p22.3		rs3996330-?	NR	1E-10				NR [~ 8900000] (imputed)	N
600	chr7	2018869	2018870	rs3996329	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	7p22.3	MAD1L1	rs3996329-G	NR	4E-8		0.0096161	[0.0062-0.013] unit decrease	Affymetrix [18485882] (imputed)	N
600	chr7	2020994	2020995	rs12668848	34002096	Mullins N	2021-05-17	Nat Genet	Genome-wide association study of more than 40,000 bipolar disorder cases provides new insights into the underlying biology.	Bipolar disorder	41,917 European ancestry cases, 371,549 European ancestry controls	NA	7p22.3	MAD1L1	rs12668848-G	0.575	2E-9		1.05866	[1.04-1.08]	Affymetrix, Illumina [7549318] (imputed)	N
600	chr7	2020994	2020995	rs12668848	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs ADHD (ordinary least squares (OLS))	40,675 schizophrenia cases, 19,099 ADHD cases	NA	7p22.3		rs12668848-?	NR	8E-11		0.0223	NR unit decrease	NR [4428082] (imputed)	N
600	chr7	2020994	2020995	rs12668848	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	7p22.3	MAD1L1	rs12668848-?		1E-13				NR [6786993] (imputed)	N
600	chr7	2020994	2020995	rs12668848	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	7p22.3	MAD1L1	rs12668848-G	NR	2E-15		1.0799136	[1.06-1.1]	Illumina [6627481] (imputed)	N
600	chr7	2020994	2020995	rs12668848	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	7p22.3	MAD1L1	rs12668848-G	NR	1E-13	(EA)	1.0855407	[1.06-1.11]	Illumina [6627481] (imputed)	N
600	chr7	2020994	2020995	rs12668848	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	7p22.3	FTSJ2, MAD1L1	rs12668848-G	NR	4E-17		1.0834236	[1.06-1.1]	Affymetrix, Illumina [up to 5107227] (imputed)	N
600	chr7	2020994	2020995	rs12668848	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	7p22.3	NR	rs12668848-G	NR	1E-13		1.0869565	[NR]	Illumina [7158791] (imputed)	N
600	chr7	2025096	2025096	rs10650434	29483656	Pardinas AF	2018-02-26	Nat Genet	Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.	Schizophrenia	40,675 European ancestry cases, 64,643 European ancestry controls	1,651 European ancestry cases, 4,111 cases, 142,717 European ancestry controls, 11,507 controls	7p22.3	MAD1L1, MIR4655	rs10650434-?	NR	1E-18		1.0893246	[1.07-1.11]	Illumina [8000000] (imputed)	N
600	chr7	2029866	2029867	rs58120505	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Schizophrenia (MTAG)	940,613 European ancestry individuals	NA			rs58120505-?	NR	3E-13				NR [2625067]	N
600	chr7	2029866	2029867	rs58120505	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Bipolar disorder (MTAG)	1,450,972 European ancestry individuals	NA			rs58120505-?	NR	5E-11				NR [2625067]	N
600	chr7	2029866	2029867	rs58120505	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs autism spectrum disorder (ordinary least squares (OLS))	40,675 schizophrenia cases, 18,381 autism spectrum disorder cases	NA			rs58120505-?	NR	5E-12		0.0208	NR unit decrease	NR [4484088] (imputed)	N
600	chr7	2029866	2029867	rs58120505	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs anorexia nervosa (ordinary least squares (OLS))	40,675 schizophrenia cases, 16,992 anorexia nervosa cases	NA			rs58120505-?	NR	2E-13		0.0242	NR unit decrease	NR [4425810] (imputed)	N
600	chr7	2029866	2029867	rs58120505	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Schizophrenia (MTAG)	at least 33,640 European ancestry cases, at least 43,456 European ancestry controls	NA		NR	rs58120505-T	0.5795	1E-12		0.07911615	[0.057-0.101] unit increase	NR [NR]	N
600	chr7	2029866	2029867	rs58120505	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Bipolar disorder (MTAG)	65,682 individuals	NA		NR	rs58120505-?		7E-9				NR [520857]	N
600	chr7	2029866	2029867	rs58120505	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA		NR	rs58120505-?	NR	1E-18		1.08101	[1.06-1.1]	Affymetrix, Illumina [12447948] (imputed)	N
600	chr7	2029866	2029867	rs58120505	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA		MAD1L1	rs58120505-?	NR	7E-13		0.014750185	[0.011-0.019] unit decrease	NR [7306098]	N
600	chr7	2029866	2029867	rs58120505	31268507	Periyasamy S	2019-07-03	JAMA Psychiatry	Association of Schizophrenia Risk With Disordered Niacin Metabolism in an Indian Genome-wide Association Study.	Schizophrenia	816 Indian ancestry cases, 900 Indian ancestry controls, 505 Indian ancestry cases and 871 Indian ancestry controls from 405 families, up to 36,989 European and unknown ancestry cases, up to 113,075 European and unknown ancestry controls	NA		NR	rs58120505-?	NR	8E-14				Illumina [up to 5582932] (imputed)	N
600	chr7	2031591	2031592	rs3931398	28115744	Ikeda M	2017-01-24	Mol Psychiatry	A genome-wide association study identifies two novel susceptibility loci and trans population polygenicity associated with bipolar disorder.	Bipolar disorder	2,964 Japanese ancestry case, 61,887 Japanese ancestry controls, 7,481 European ancestry cases, 9,250 European ancestry controls	NA	7p22.3	MAD1L1	rs3931398-A	NR	4E-7	(Japanese)	1.34919	[1.20176-1.51471]	Illumina [at least 6195093] (imputed)	N
600	chr7	2032802	2032803	rs11764590	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (father's age at death or father's attained age)	up to 699,000 European ancestry individuals	NA	7p22.3	NR	rs11764590-G		6E-6				Illumina [458865]	N
600	chr7	2032802	2032803	rs11764590	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	7p22.3	intergenic	rs11764590-T	0.18595	8E-8		5.36	z score decrease	Illumina [18485882] (imputed)	N
600	chr7	2032864	2032865	rs1403174	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation	up to 341,427 European ancestry individuals	NA	7p22.3	NR	rs1403174-T	0.579	3E-10		0.016	[0.011-0.021] unit increase	NR [~ 10000000] (imputed)	N
600	chr7	2033779	2033780	rs868754	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	7p22.3	MAD1L1	rs868754-G	NR	2E-9		0.010477	[0.0071-0.0139] unit decrease	Affymetrix [18485882] (imputed)	N
600	chr7	2036459	2036460	rs59574136	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Superior temporal gyrus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	7p22.3	MAD1L1	rs59574136-?		6E-6				Illumina [4322238] (imputed)	N
600	chr7	2036459	2036460	rs59574136	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Superior frontal gyrus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	7p22.3	MAD1L1	rs59574136-?		4E-6				Illumina [4322238] (imputed)	N
600	chr7	2036459	2036460	rs59574136	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	7p22.3	FTSJ2, MAD1L1, MIR4655, MIR6836, NUDT1, SNX8	rs59574136-T		7E-16		1.08	[1.06-1.11]	Affymetrix, Illumina [NR]	N
600	chr7	2036668	2036669	rs4721295	24166486	Sleiman P	2013-10-29	Sci Rep	GWAS meta analysis identifies TSNARE1 as a novel Schizophrenia / Bipolar susceptibility locus.	Schizophrenia, schizoaffective disorder or bipolar disorder	11,985 European, African American, Asian, other and unknown ancestry schizophrenia cases, 377 European, African American, Asian, other and unknown ancestry schizoaffective disorder cases, 1,032 bipolar disorder cases, 34,676 European, African American, Asian, other and unknown ancestry controls	2652 individuals	7p22.3	MAD1L1	rs4721295-?	0.378	6E-10				Affymetrix, Illumina [NR] (imputed)	N
600	chr7	2041431	2041432	rs1107592	23453885	Smoller JW	2013-02-27	Lancet	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NA	7p22.3	NR	rs1107592-A		5E-6	(Modelling analysis)	1.06	[1.03-1.09]	NR [1252901] (imputed)	N
600	chr7	2041431	2041432	rs1107592	20889312	Wang KS	2010-10-01	Schizophr Res	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	7p22.3	NR	rs1107592-?	NR	2E-6		1.2384	[NR]	Affymetrix [722112]	N
600	chr7	2042546	2042547	rs57633152	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	7p22.3		rs57633152-?	NR	7E-9				NR [~ 8900000] (imputed)	N
600	chr7	2050746	2050747	rs56180486	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	7p22.3		rs56180486-?	NR	3E-11				NR [~ 8900000] (imputed)	N
600	chr7	2051502	2051503	rs11514731	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	7p22.3	NR	rs11514731-G	NR	3E-8		0.01657	[0.011-0.022] unit decrease	Affymetrix [10847151] (imputed)	N
600	chr7	2052317	2052318	rs62444881	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	7p22.3		rs62444881-T	0.1958	3E-19	(conditional-joint)	0.0159	[0.012-0.019] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
600	chr7	2061110	2061111	rs11762636	34187846	Ong JS	2021-06-29	Gut	Multitrait genetic association analysis identifies 50 new risk loci for gastro-oesophageal reflux, seven new loci for Barrett's oesophagus and provides insights into clinical heterogeneity in reflux diagnosis.	Gastroesophageal reflux disease	129,080 European ancestry cases, 473,524 European ancestry controls	462,753 cases, 1,127,474 controls	7p22.3	FTSJ2, MAD1L1	rs11762636-C	0.82	2E-16		0.051	unit increase	NR [2324712] (imputed)	N
600	chr7	2067592	2067593	rs11764212	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	7p22.3	NR	rs11764212-?	NR	7E-6		0.126737	[0.071-0.182] unit decrease	NR [13958389] (imputed)	N
600	chr7	2067592	2067593	rs11764212	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	7p22.3	NR	rs11764212-A		4E-8		0.06	[0.04-0.08] unit increase	NR [NR]	N
600	chr7	2068329	2068330	rs62444886	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Anthropometric traits (multi-trait analysis)	4,988 Spanish ancestry individuals	336,107 British ancestry individuals	7p22.3	MAD1L1	rs62444886-?		2E-15				Illumina [9499600] (imputed)	N
600	chr7	2074289	2074290	rs1533827	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	7p22.3		rs1533827-T	0.2052	1E-6		33.136574	z score increase	NR [6814003]	N
600	chr7	2078980	2078981	rs56226325	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Neuroticism	274,107 British ancestry individuals	NA	7p22.3	NR	rs56226325-T	0.1534	4E-8		0.01052	[0.0068-0.0143] unit decrease	NR [8968716] (imputed)	N
600	chr7	2078980	2078981	rs56226325	31906708	Levey DF	2020-01-07	Am J Psychiatry	Reproducible Genetic Risk Loci for Anxiety: Results From ~200,000 Participants in the Million Veteran Program.	Anxiety	175,163 European ancestry individuals, 24,448 African American individuals	NA	7p22.3	MAD1L1	rs56226325-C	NR	2E-8	(EA)			Affymetrix [at least 723305] (imputed)	N
600	chr7	2078980	2078981	rs56226325	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	7p22.3		rs56226325-?	NR	6E-9				NR [~ 8900000] (imputed)	N
600	chr7	2079743	2079744	rs2056477	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	7p22.3		rs2056477-C	NR	2E-14		0.0213	[0.016-0.027] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
600	chr7	2079743	2079744	rs2056477	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms	688,809 individuals	NA	7p22.3	NR	rs2056477-?		4E-8				NR [11140414]	N
600	chr7	2079743	2079744	rs2056477	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		7p22.3	MAD1L1	rs2056477-G	0.771778	2E-12		0.0115643	[0.0084-0.0148] unit increase	Affymetrix [12370749]	N
600	chr7	2079743	2079744	rs2056477	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	7p22.3	NR	rs2056477-C	NR	3E-8		5.552	z score decrease	Affymetrix [10847151] (imputed)	N
600	chr7	2079743	2079744	rs2056477	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depression	688,809 European ancestry individuals	NA	7p22.3	NR	rs2056477-C	NR	4E-8		5.472	z score decrease	Affymetrix [10847151] (imputed)	N
600	chr7	2079743	2079744	rs2056477	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	7p22.3	ELFN1	rs2056477-C	0.231276	8E-9		5.76	z score decrease	NR [10847151] (imputed)	N
600	chr7	2080113	2080114	rs11763750	30846698	Dashti HS	2019-03-07	Nat Commun	Genome-wide association study identifies genetic loci for self-reported habitual sleep duration supported by accelerometer-derived estimates.	Sleep duration (short sleep)	106,192  European ancestry cases, 305,742 European ancestry controls	47,180  adults, 10,554 children or adolescents	7p22.3	MAD1L1	rs11763750-G	NR	5E-9		1.036		NR [14661600] (imputed)	N
600	chr7	2082603	2082604	rs11766468	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	7p22.3	MAD1L1	rs11766468-A	0.1467	8E-12		0.003	[0.0022-0.0038] unit increase	Affymetrix [15275733] (imputed)	N
600	chr7	2082603	2082604	rs11766468	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	223,215 British ancestry individuals	111,610 British ancestry individuals	7p22.3	MAD1L1	rs11766468-A	0.15	3E-9		0.003	[0.0022-0.0038] unit increase	Affymetrix [15275733] (imputed)	N
600	chr7	2096254	2096255	rs55893771	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling miserable	376,097 European ancestry individuals	NA	7p22.3	ELFN1	rs55893771-T	0.14549	6E-12		6.88	z score decrease	NR [10847151] (imputed)	N
601	chr7	2104363	2104364	rs56072378	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Major depressive disorder (ICD-10 coded)	8,276 British ancestry cases, 209,308 British ancestry controls	NA	7p22.3	NR	rs56072378-G	0.2197	9E-7		0.0035	[0.0021-0.0049] unit decrease	NR [7666894] (imputed)	N
601	chr7	2104428	2104429	rs544085269	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 219)	19,670 European ancestry individuals	NA	7p22.3		rs544085269-?	NR	4E-8				NR [9705931] (imputed)	N
601	chr7	2106927	2106928	rs34731055	30846698	Dashti HS	2019-03-07	Nat Commun	Genome-wide association study identifies genetic loci for self-reported habitual sleep duration supported by accelerometer-derived estimates.	Sleep duration	446,118 European ancestry individuals	47,180  adults, 10,554 children or adolescents	7p22.3	NR	rs34731055-T	NR	1E-10		1.044	unit increase	Affymetrix [14661600] (imputed)	N
601	chr7	2109498	2109499	rs62444919	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	7p22.3	NR	rs62444919-C	0.208748	2E-15		0.06910899	[0.052-0.086] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
601	chr7	2109820	2109821	rs11772627	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	7p22.3		rs11772627-?	NR	5E-18		0.0291	unit decrease	NR [NR]	N
601	chr7	2110345	2110346	rs3823624	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Sleep duration	384,317 European ancestry individuals	NA	7p22.3		rs3823624-C	0.1807	1E-9		0.01934	[0.013-0.026] unit increase	Affymetrix, Illumina [10862567] (imputed)	N
601	chr7	2110345	2110346	rs3823624	30718901	Howard DM	2019-02-04	Nat Neurosci	Genome-wide meta-analysis of depression identifies 102 independent variants and highlights the importance of the prefrontal brain regions.	Depression	118,811 European ancestry cases, 327,427 European ancestry controls, 127,552 cases, 233,763 controls	414,055 European ancestry cases, 892,299 European ancestry controls	7p22.3	NR	rs3823624-T	0.8067	2E-26		1.03	[1.024-1.036]	NR [8098588] (imputed)	N
601	chr7	2112505	2112506	rs1860826	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	7p22.3		rs1860826-?	NR	8E-9				NR [~ 8900000] (imputed)	N
601	chr7	2140311	2140312	rs4719431	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Superior temporal gyrus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	7p22.3	MAD1L1	rs4719431-?		1E-6				Illumina [4322238] (imputed)	N
601	chr7	2143593	2143594	rs56085180	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	7p22.3		rs56085180-A	0.0366	6E-13		0.0269	[0.02-0.034] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
601	chr7	2145628	2145629	rs111611027	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	67,764 individuals	NA	7p22.3	NR	rs111611027-?		2E-10				NR [8377093]	N
601	chr7	2145628	2145629	rs111611027	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	65,967 individuals	NA	7p22.3	NR	rs111611027-?		2E-10				NR [8377093]	N
601	chr7	2159776	2159777	rs71525361	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	7p22.3	Intergenic	rs71525361-T	0.8877	2E-9		0.0186	[0.013-0.025] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
601	chr7	2167938	2167939	rs3800917	30420678	Tasa T	2018-11-12	Eur J Hum Genet	Genetic variation in the Estonian population: pharmacogenomics study of adverse drug effects using electronic health records.	Adverse response to drug	16,226 European ancestry individuals	NA	7p22.3	MAD1L1	rs3800917-A	0.35	4E-7	(Other antihistamines for systemic use [R06AX])	2.1		Illumina [16500000] (imputed)	N
601	chr7	2190384	2190385	rs1637770	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	7p22.3		rs1637770-T	0.0683	7E-12		0.0191	[0.014-0.025] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
601	chr7	2194395	2194396	rs13240401	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	7p22.3	Intergenic	rs13240401-T	0.7829	4E-18	(MTAG)	0.0174	[0.013-0.021] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
601	chr7	2194395	2194396	rs13240401	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	7p22.3		rs13240401-T	0.7812	2E-24		0.0176	[0.014-0.021] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
601	chr7	2194395	2194396	rs13240401	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	7p22.3	Intergenic	rs13240401-T	0.7812	3E-25	(MTAG)	0.0166	[0.013-0.02] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
601	chr7	2194606	2194607	rs3800925	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	7p22.3		rs3800925-?	NR	6E-13				NR [~ 8900000] (imputed)	N
601	chr7	2194606	2194607	rs3800925	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	7p22.3	Intergenic	rs3800925-T	0.7775	2E-10	(MTAG)	0.0176	[0.012-0.023] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
601	chr7	2195131	2195132	rs34782622	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	7p22.3	Intergenic	rs34782622-A	0.8173	1E-11	(MTAG)	0.0156	[0.011-0.02] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
601	chr7	2207115	2207116	rs192039210	34353775	Galesloot TE	2021-08-02	Eur Urol Oncol	Genome-wide Meta-analysis Identifies Novel Genes Associated with Recurrence and Progression in Non-muscle-invasive Bladder Cancer.	Recurrence-free survival in non-muscle-invasive bladder cancer	3,400 European ancestry individuals	NA	7p22.3		rs192039210-A	NR	4E-7		1.94	[1.5-2.5]	Illumina [7591411] (imputed)	N
601	chr7	2219965	2219966	rs1639906	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	7p22.3	Intergenic	rs1639906-?	NR	6E-6		1.341	[NR]	Affymetrix [492217] (imputed)	N
601	chr7	2227810	2227811	rs1637750	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation-estimated plasminogen activator inhibitor-1 levels	6,149 African American individuals	NA	7p22.3	NR	rs1637750-G	0.3616	2E-9		296.572	[199.71-393.44] unit increase	Affymetrix, Illumina [12990252] (imputed)	N
602	chr7	2236431	2236432	rs1637742	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	7p22.3	NR	rs1637742-G	0.38668	3E-12		0.050463922	[0.036-0.065] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
602	chr7	2248835	2248836	rs3800932	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation-estimated plasminogen activator inhibitor-1 levels	34,448 European ancestry individuals	NA	7p22.3	NR	rs3800932-T	0.0212	3E-10		544.973	[375.34-714.6] unit increase	Affymetrix, Illumina [7567618] (imputed)	N
602	chr7	2278225	2278226	rs7799006	23453885	Smoller JW	2013-02-27	Lancet	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NA	7p22.3	NR	rs7799006-C	NR	5E-6	(5 degree of freedom test)	1.059	[1.03-1.08]	NR [1252901] (imputed)	N
602	chr7	2288915	2288916	rs28514741	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation-estimated plasminogen activator inhibitor-1 levels	34,448 European ancestry individuals, 6,149 African American individuals	NA	7p22.3	NR	rs28514741-?	NR	1E-17				Affymetrix, Illumina [6211016] (imputed)	N
602	chr7	2296551	2296552	rs144787122	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	7p22.3		rs144787122-G	NR	9E-13		0.1344	[0.098-0.171] unit increase	Affymetrix, Illumina [20536134] (imputed)	N
602	chr7	2296551	2296552	rs144787122	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	7p22.3		rs144787122-G	NR	6E-54		0.3141	[0.27-0.35] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
602	chr7	2296551	2296552	rs144787122	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	7p22.3		rs144787122-G	NR	8E-29		0.2218	[0.18-0.26] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
602	chr7	2296551	2296552	rs144787122	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	7p22.3		rs144787122-G	NR	1E-8		0.0942	[0.062-0.127] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
602	chr7	2296551	2296552	rs144787122	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	7p22.3		rs144787122-G	NR	4E-10		0.12	[0.083-0.157] unit increase	Affymetrix, Illumina [20521447] (imputed)	N
602	chr7	2296551	2296552	rs144787122	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	7p22.3		rs144787122-G	NR	2E-8		0.1039	[0.067-0.14] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
602	chr7	2296551	2296552	rs144787122	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Total cholesterol levels	437,878 European ancestry individuals	NA	7p22.3		rs144787122-?	NR	9E-18		0.142279	[0.11-0.18] unit increase	NR [9800000] (imputed)	N
602	chr7	2296551	2296552	rs144787122	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Serum total protein level	400,482 European ancestry individuals	NA	7p22.3		rs144787122-?	NR	6E-76		0.312468	[0.28-0.35] unit decrease	NR [9800000] (imputed)	N
602	chr7	2296551	2296552	rs144787122	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Serum albumin levels	400,938 European ancestry individuals	NA	7p22.3		rs144787122-?	NR	3E-43		0.236247	[0.2-0.27] unit decrease	NR [9800000] (imputed)	N
602	chr7	2296551	2296552	rs144787122	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Red blood cell count	445,305 European ancestry individuals	NA	7p22.3		rs144787122-?	NR	8E-10		0.0873144	[0.057-0.118] unit increase	NR [9800000] (imputed)	N
602	chr7	2296551	2296552	rs144787122	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean platelet volume	445,364 European ancestry individuals	NA	7p22.3		rs144787122-?	NR	5E-16		0.112563	[0.084-0.141] unit increase	NR [9800000] (imputed)	N
602	chr7	2296551	2296552	rs144787122	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Heel bone mineral density T score	445,855 European ancestry individuals	NA	7p22.3		rs144787122-?	NR	4E-9		0.0885961	[0.059-0.118] unit decrease	NR [9800000] (imputed)	N
602	chr7	2296551	2296552	rs144787122	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	HDL cholesterol levels	400,754 European ancestry individuals	NA	7p22.3		rs144787122-?	NR	2E-13		0.118289	[0.086-0.15] unit increase	NR [9800000] (imputed)	N
602	chr7	2296551	2296552	rs144787122	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Direct low density lipoprotein cholesterol levels	437,068 European ancestry individuals	NA	7p22.3		rs144787122-?	NR	1E-14		0.125944	[0.093-0.159] unit increase	NR [9800000] (imputed)	N
602	chr7	2296551	2296552	rs144787122	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Calcium levels	400,792 European ancestry individuals	NA	7p22.3		rs144787122-?	NR	8E-12		0.113417	[0.079-0.148] unit decrease	NR [9800000] (imputed)	N
602	chr7	2296551	2296552	rs144787122	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Aspartate aminotransferase levels	436,275 European ancestry individuals	NA	7p22.3		rs144787122-?	NR	9E-10		0.100526	[0.067-0.134] unit increase	NR [9800000] (imputed)	N
602	chr7	2296551	2296552	rs144787122	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Apolipoprotein A1 levels	398,508 European ancestry individuals	NA	7p22.3		rs144787122-?	NR	2E-9		0.0977546	[0.065-0.131] unit increase	NR [9800000] (imputed)	N
602	chr7	2296551	2296552	rs144787122	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	7p22.3	NR	rs144787122-G	NR	7E-19		0.1752	[0.14-0.21] unit increase	Affymetrix [9000000] (imputed)	N
602	chr7	2296551	2296552	rs144787122	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	7p22.3	NR	rs144787122-G	NR	2E-55		0.3223	[0.28-0.36] unit decrease	Affymetrix [9000000] (imputed)	N
602	chr7	2296551	2296552	rs144787122	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	7p22.3	NR	rs144787122-G	NR	1E-30		0.2361	[0.2-0.28] unit decrease	Affymetrix [9000000] (imputed)	N
602	chr7	2296551	2296552	rs144787122	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	7p22.3	NR	rs144787122-G	NR	4E-21		0.1938	[0.15-0.23] unit decrease	Affymetrix [9000000] (imputed)	N
602	chr7	2296551	2296552	rs144787122	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	7p22.3	NR	rs144787122-G	NR	1E-15		0.1584	[0.12-0.2] unit increase	Affymetrix [9000000] (imputed)	N
602	chr7	2296551	2296552	rs144787122	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	7p22.3	NR	rs144787122-G	NR	2E-13		0.1454	[0.11-0.18] unit increase	Affymetrix [9000000] (imputed)	N
602	chr7	2296551	2296552	rs144787122	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	7p22.3	SNX8	rs144787122-G	0.00375599999999998	3E-9		0.106929794	[0.072-0.142] unit increase	Affymetrix [93095623] (imputed)	N
602	chr7	2296551	2296552	rs144787122	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	7p22.3	SNX8	rs144787122-G	0.00370000000000004	2E-12		0.13008764	[0.094-0.166] unit increase	Affymetrix [93095623] (imputed)	N
602	chr7	2296551	2296552	rs144787122	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p22.3	NR	rs144787122-A	0.996248	9E-12				Affymetrix, Illumina [17210439] (imputed)	N
602	chr7	2296551	2296552	rs144787122	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	7p22.3	SNX8	rs144787122-A	0.0035	1E-8		0.0997	[0.066-0.134] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
602	chr7	2296551	2296552	rs144787122	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	7p22.3		rs144787122-?	NR	4E-9		0.0958658	[0.063-0.129] unit increase	Affymetrix [20259828] (imputed)	N
602	chr7	2298226	2298227	rs2398668	20889312	Wang KS	2010-10-01	Schizophr Res	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	7p22.3	NR	rs2398668-?	NR	7E-6		1.2261	[NR]	Affymetrix [722112]	N
602	chr7	2299300	2299301	rs77610730	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation-estimated plasminogen activator inhibitor-1 levels	6,149 African American individuals	NA	7p22.3	NR	rs77610730-G	0.9819	5E-28		2268.75	[1863.63-2673.87] unit decrease	Affymetrix, Illumina [12990252] (imputed)	N
602	chr7	2322942	2322943	rs58921703	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	7p22.3	Intergenic	rs58921703-T	0.3762	1E-8	(MTAG)	0.0097	[0.0064-0.013] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
602	chr7	2322942	2322943	rs58921703	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	7p22.3		rs58921703-T	0.3698	8E-14		0.0109	[0.008-0.0138] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
602	chr7	2322942	2322943	rs58921703	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	7p22.3	Intergenic	rs58921703-T	0.3698	4E-13	(MTAG)	0.0099	[0.0072-0.0126] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
602	chr7	2329496	2329497	rs4719486	32769997	Zhou W	2020-08-07	Nat Commun	GWAS of thyroid stimulating hormone highlights pleiotropic effects and inverse association with thyroid cancer.	Thyroid stimulating hormone levels	119,715 European ancestry individuals	NA	7p22.3	SNX8	rs4719486-A	0.419305990691917	8E-9		0.0272	[0.018-0.036] SD decrease	Illumina [22400000] (imputed)	N
602	chr7	2334385	2334386	rs10950641	29884837	Reyes-Gibby CC	2018-06-08	Sci Rep	Genome-wide association study identifies genes associated with neuropathy in patients with head and neck cancer.	Neuropathic pain in head and neck cancer	130 European ancestry cases, 913 European ancestry controls	NA	7p22.3	SNX8	rs10950641-A	0.07	3E-14		2.88	[2.19, 3.79]	Illumina [714494]	N
602	chr7	2352593	2352594	rs62442539	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	IgD on IgD+ CD38+ B cell	3,656 Sardinian (founder/genetic isolate) ancestry individuals	NA	7p22.3		rs62442539-C	0.27988	7E-21		0.2603	[0.21-0.31] unit increase	Illumina [18238289] (imputed)	N
602	chr7	2354051	2354052	rs775827685	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Serum total protein level	400,482 European ancestry individuals	NA	7p22.3		rs775827685-?	NR	1E-8		0.423232	[0.27-0.58] unit decrease	NR [9800000] (imputed)	N
602	chr7	2354351	2354352	rs55871547	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	IgD on transitional B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	7p22.3		rs55871547-G	0.27524	2E-16		0.2309	[0.18-0.29] unit increase	Illumina [18238311] (imputed)	N
603	chr7	2359988	2359989	rs6461309	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	7p22.3	NR	rs6461309-?	NR	3E-28				Affymetrix [NR]	N
603	chr7	2371942	2371943	rs6945864	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	7p22.3	NR	rs6945864-C	NR	3E-11		0.0166	[0.012-0.021] unit increase	Affymetrix [9000000] (imputed)	N
603	chr7	2427953	2427954	rs73045247	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Kidney cancer	1,338 European ancestry cases, 410,350 European ancestry controls	NA	7p22.3		rs73045247-G	0.041683	4E-7		1.543448	NR	Affymetrix [7846216] (imputed)	N
603	chr7	2430832	2430833	rs553844888	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	7p22.3	AC004840.8, RP4-607J2.1	rs553844888-C	0.273174	2E-10		0.016928246	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
603	chr7	2443301	2443302	rs55858457	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	7p22.3	CHST12	rs55858457-T	NR	3E-8		1.0665529	NR	Affymetrix, Illumina [8278136] (imputed)	N
603	chr7	2446679	2446680	rs7808353	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Pappalysin-1 levels	21,758 European ancestry individuals	9,173 individuals	7p22.3		rs7808353-A	0.83	2E-11		0.0833	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
603	chr7	2448492	2448493	rs6952809	21833088	Sawcer S	2011-08-11	Nature	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	7p22.3	CHST12	rs6952809-A	NR	4E-6	(Conditioned on rs1843938)	1.08	[1.06-1.09]	Illumina [465434]	N
603	chr7	2449732	2449733	rs10215904	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CHST12	5,356 Icelandic ancestry individuals	NA	7p22.3		rs10215904-T	0.1279	1E-12		0.193592	[0.14-0.25] unit increase	Illumina [7506463] (imputed)	N
603	chr7	2464862	2464862	rs34629622	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	7p22.3	CHST12	rs34629622-CA	0.810422	3E-9		0.016849462	[0.011-0.022] unit increase	Affymetrix [93095623] (imputed)	N
603	chr7	2473746	2473747	rs2969076	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	7p22.3	CHST12	rs2969076-A	0.8715625	7E-11	(CHST12, 6626_81_3)	0.23497052	[0.16-0.31] unit decrease	Illumina [> 1000000] (imputed)	N
604	chr7	2491917	2491918	rs11486794	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	7p22.3	CHST12, MIR4648	rs11486794-C		3E-7		0.304	unit increase	Affymetrix [at least 2696785] (imputed)	N
604	chr7	2491917	2491918	rs11486794	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	7p22.3	CHST12, MIR4648	rs11486794-C		8E-10		0.219	unit increase	Affymetrix [at least 2696785] (imputed)	N
604	chr7	2496596	2496596	rs35697782	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	7p22.3	NR	rs35697782-AG	0.67085	1E-11		0.016177846	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
604	chr7	2507691	2507692	rs151031105	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Hyperopia	10,828 European ancestry hyperopia cases, 21,416 European ancestry emmetropia controls	NA	7p22.3	NR	rs151031105-?	NR	1E-6		0.410766	[0.24-0.58] unit decrease	NR [13958389] (imputed)	N
604	chr7	2507911	2507912	rs12112077	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	7p22.3		rs12112077-T	0.261328	1E-9		0.0153718665	[0.01-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
604	chr7	2509769	2509770	rs10950702	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Coronary artery disease in dyslipidemia	768 Korean ancestry cases, 19,999 Korean ancestry controls	NA	7p22.3		rs10950702-A	0.02051	3E-6		1.968	[1.479-2.61899999999999]	Affymetrix [7975321] (imputed)	N
604	chr7	2512544	2512545	rs2969070	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Diastolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	7p22.3	CHST12, LFNG	rs2969070-A	0.641	1E-6	(EA, initial)	0.222	[0.13-0.31] unit decrease	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
604	chr7	2512544	2512545	rs2969070	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Systolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	7p22.3	CHST12, LFNG	rs2969070-A	0.639	1E-10		0.2975	[0.21-0.39] mm Hg decrease	Affymetrix, Illumina, Perlegen [128272]	N
604	chr7	2512544	2512545	rs2969070	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Diastolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	7p22.3	CHST12, LFNG	rs2969070-A	0.639	3E-11		0.1821	[0.13-0.24] mm Hg decrease	Affymetrix, Illumina, Perlegen [128272]	N
604	chr7	2517472	2517473	rs11767162	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	7p22.3	NR	rs11767162-T	0.218785	1E-10		0.014536	[0.01-0.019] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
604	chr7	2517472	2517473	rs11767162	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p22.3	NR	rs11767162-T	0.183452	3E-11				Affymetrix, Illumina [24558453] (imputed)	N
604	chr7	2517472	2517473	rs11767162	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	7p22.3	NR	rs11767162-T	0.21874	6E-14		0.017004	[0.013-0.021] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
604	chr7	2518688	2518689	rs35069969	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	7p22.3	GRIFIN	rs35069969-C	0.34547	7E-10		0.014683978	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
604	chr7	2521857	2521858	rs2906153	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7p22.3		rs2906153-?	NR	2E-11				NR [~ 8900000] (imputed)	N
604	chr7	2524796	2524797	rs113322719	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	7p22.3		rs113322719-G	0.417409	4E-11		0.015765842	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
604	chr7	2526510	2526511	rs2906145	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls, 49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	7p22.3		rs2906145-G	NR	3E-8		0.0476	[0.031-0.064] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
604	chr7	2529409	2529410	rs2906140	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	7p22.3	NR	rs2906140-A	0.676152	1E-9		0.014592712	[0.0099-0.0193] unit decrease	Affymetrix [93095623] (imputed)	N
604	chr7	2529409	2529410	rs2906140	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	7p22.3		rs2906140-A	0.67621	1E-12		0.01698859	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
604	chr7	2529409	2529410	rs2906140	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	7p22.3		rs2906140-A	0.676196	2E-14		0.018278409	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
604	chr7	2529622	2529623	rs10282122	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	7p22.3		rs10282122-?	NR	2E-14				NR [~ 8900000] (imputed)	N
604	chr7	2530167	2530168	rs11760230	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	7p22.3		rs11760230-G	NR	4E-9		0.0432	[0.029-0.058] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
604	chr7	2530430	2530431	rs2969072	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	7p22.3		rs2969072-?	NR	4E-10				NR [~ 8900000] (imputed)	N
604	chr7	2530430	2530431	rs2969072	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	7p22.3		rs2969072-?	NR	7E-12		0.0140817	[0.0098-0.0184] unit increase	Affymetrix [20259828] (imputed)	N
604	chr7	2534391	2534392	rs2969037	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	7p22.3		rs2969037-?	NR	7E-11				NR [~ 8900000] (imputed)	N
604	chr7	2536454	2536455	rs286544	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	7p22.3		rs286544-A	NR	6E-10		0.0108	[0.0075-0.0141] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
604	chr7	2537865	2537866	rs13230181	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls	NA	7p22.3	LFNG	rs13230181-A	0.235101	1E-8		0.053742904	[0.035-0.072] unit increase	Affymetrix [7288503] (imputed)	N
604	chr7	2537865	2537866	rs13230181	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	7p22.3	LFNG	rs13230181-A	0.236028	5E-10		0.044131357	[0.03-0.058] unit increase	Affymetrix [7288503] (imputed)	N
604	chr7	2562201	2562201	rs145812773	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	7p22.3	LFNG	rs145812773-CCCCCGG	0.489727	4E-10		0.014519938	[0.01-0.0191] unit decrease	Affymetrix [93095623] (imputed)	N
604	chr7	2562201	2562201	rs145812773	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	7p22.3	NR	rs145812773-I	0.489534	4E-13		0.014868	[0.011-0.019] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
604	chr7	2562611	2562612	rs12700026	34957435	Bonfiglio F	2021-12-08	Cell Genom	GWAS of stool frequency provides insights into gastrointestinal motility and irritable bowel syndrome.	Stool frequency	167,875 European ancestry individuals	NA	7p22.3		rs12700026-A	0.89	1E-10		0.029	[0.019-0.039] unit decrease	Affymetrix, Illumina [8817117] (imputed)	N
604	chr7	2565267	2565268	rs893239	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	7p22.3	LFNG	rs893239-C	0.523	1E-6	(AA)	0.023	unit decrease	Illumina [NR] (imputed)	N
604	chr7	2565267	2565268	rs893239	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	7p22.3	LFNG	rs893239-C	0.523	1E-6	(AA)	0.117	NR unit decrease	Illumina [NR] (imputed)	N
604	chr7	2582451	2582452	rs6972204	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	7p22.3	BRAT1	rs6972204-G	0.171	5E-6	(Bike energy expenditure )	0.03	[NR] kcal/min increase	Illumina [899892]	N
604	chr7	2591646	2591647	rs11307617	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	7p22.3	BRAT1	rs11307617-C	0.212985	7E-18		0.02370632	[0.018-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
604	chr7	2609764	2609765	rs1036504	29489655	Liu X	2018-03-01	Medicine (Baltimore)	Genome-wide association study of maternal genetic effects and parent-of-origin effects on food allergy.	Food allergy (parent-of-origin effect)	482 European ancestry trios, 19 European ancestry father-child pairs, 59 European ancestry mother-child pairs, 28 European ancestry affected children	NA	7p22.3	IQCE	rs1036504-?	NR	8E-6				Illumina [NR]	N
604	chr7	2613781	2613782	rs6964752	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	7p22.3	NR	rs6964752-?	NR	1E-221				Affymetrix [NR]	N
604	chr7	2615213	2615213	rs149962820	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid pneumonia vs population)	1,004 European ancestry cases, 680,354 European ancestry controls, 218 Hispanic or Latin American cases, 94,318 Hispanic or Latin American controls, 64 Black or African American cases, 22,412 Black or African American controls	NA	7p22.3		rs149962820-?	NR	7E-6		0.3737531	[0.21-0.54] unit increase	Illumina [9901720] (imputed)	N
605	chr7	2622923	2622924	rs79159052	31151762	Gelernter J	2019-04-08	Biol Psychiatry	Genome-wide Association Study of Maximum Habitual Alcohol Intake in >140,000 U.S. European and African American Veterans Yields Novel Risk Loci.	Maximum habitual alcohol consumption	126,936 European ancestry individuals, 17,029 African American individuals	NA	7p22.3	NR	rs79159052-A	NR	9E-6	(AA)	0.282349	[0.16-0.41] unit decrease	Affymetrix [up to 6007810] (imputed)	N
605	chr7	2632035	2632037	rs10534613	31906708	Levey DF	2020-01-07	Am J Psychiatry	Reproducible Genetic Risk Loci for Anxiety: Results From ~200,000 Participants in the Million Veteran Program.	Anxiety disorders	28,525 European ancestry cases, 5,664 African American cases, 163,731 European ancestry controls, 26,410 African American controls	NA	7p22.3	IQCE	rs10534613-?	NR	5E-8	(EA)			Affymetrix [at least 723305] (imputed)	N
605	chr7	2652221	2652222	rs60525454	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental extreme longevity (95 years and older)	1,339 middle-aged British cases, 40,934 middle-aged British controls	NA	7p22.3	NR	rs60525454-?	NR	9E-6		0.00941	[0.0053-0.0136] unit decrease	Affymetrix [9658292] (imputed)	N
605	chr7	2653581	2653582	rs1045714	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in lean individuals	up to 5,529 European ancestry male individuals, up to 9,753 European ancestry female individuals	NA	7p22.3	IQCE	rs1045714-G	0.3	6E-6		0.081	[0.046-0.116] kg/m2 decrease	Affymetrix, Illumina [at least 188473] (imputed)	N
605	chr7	2668044	2668045	rs12537257	33407418	Jonsson A	2021-01-06	BMC Med Genomics	Genome-wide association study of circulating levels of glucagon during an oral glucose tolerance test.	Glucagon levels in response to oral glucose tolerance test (fasting)	553 European ancestry individuals, 1,346 individuals	NA	7p22.3	NR	rs12537257-A	0.1827	6E-6		0.196	[0.11-0.28] unit decrease	Illumina [NR] (imputed)	N
605	chr7	2669411	2669412	rs61184450	33407418	Jonsson A	2021-01-06	BMC Med Genomics	Genome-wide association study of circulating levels of glucagon during an oral glucose tolerance test.	Glucagon levels in response to oral glucose tolerance test (decremental area under the curve for 0-120 minutes)	553 European ancestry individuals, 1,346 individuals	NA	7p22.3	NR	rs61184450-T	0.8145	9E-6		0.1942	[0.11-0.28] unit increase	Illumina [NR] (imputed)	N
605	chr7	2669975	2669976	rs77100396	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	7p22.3	TTYH3	rs77100396-A	0.015867	2E-15		0.07136295	[0.054-0.089] unit increase	Affymetrix [93095623] (imputed)	N
605	chr7	2682231	2682232	rs13226070	34020725	Reddy JS	2021-05-21	Acta Neuropathol Commun	Genome-wide analysis identifies a novel LINC-PINT splice variant associated with vascular amyloid pathology in Alzheimer's disease.	Cerebral amyloid angiopathy in Alzheimer's disease	821 European ancestry individuals	NA		TTYH3	rs13226070-C	0.23	8E-6		0.12	[0.06-0.17] unit decrease	Illumina [1679420] (imputed)	N
605	chr7	2702815	2702816	rs7811528	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	7p22.3	NR	rs7811528-G	NR	4E-6		1.0752687	[NR]	Illumina [7158791] (imputed)	N
605	chr7	2733281	2733282	rs111675143	31557306	Wang RS	2019-09-26	Clin Pharmacol Ther	Pharmacogenomics and Placebo Response in a Randomized Clinical Trial in Asthma.	Response to placebo treatment in childhood asthma (FVC change)	250 European ancestry children	NA	7p22.3	AMZ1	rs111675143-T	0.14	7E-6		7.41	NR unit decrease	Illumina [NR] (imputed)	N
605	chr7	2740895	2740896	rs73281175	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7p22.3	NR	rs73281175-C	0.02787	8E-9	(EMILIN2)	0.09991	NR unit increase	Illumina [1671387] (imputed)	N
605	chr7	2741018	2741019	rs1724888	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mode of anisotropy)	17,706 European ancestry individuals	NA	7p22.3	NR	rs1724888-?		2E-8	(Body of corpus callosum)			NR [8955960] (imputed)	N
605	chr7	2741020	2741021	rs1724889	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	7p22.3	AMZ1, GNA12	rs1724889-G	0.740268	3E-10		0.022838	[0.016-0.03] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
605	chr7	2742676	2742677	rs147480524	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Bacterial meningitis	842 European ancestry cases, 82,778 European ancestry controls	NA	7p22.3	NR	rs147480524-?	NR	5E-6		2.9744	[1.17-4.78] unit increase	Illumina [at least 560000] (imputed)	N
605	chr7	2745123	2745124	rs6461534	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	7p22.3	AMZ1	rs6461534-G	NR	9E-16		0.0248991	[0.019-0.031] unit decrease	Affymetrix [323123] (imputed)	N
605	chr7	2748900	2748901	rs58748470	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	7p22.3	AMZ1	rs58748470-C	NR	2E-9		0.027214	[0.018-0.036] unit increase	Affymetrix [323123] (imputed)	N
605	chr7	2749789	2749790	rs10257934	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	7p22.3	AMZ1	rs10257934-G	NR	7E-11		0.0224489	[0.016-0.029] unit decrease	Affymetrix [321114] (imputed)	N
605	chr7	2749789	2749790	rs10257934	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	7p22.3	AMZ1	rs10257934-G	NR	7E-11		0.0203904	[0.014-0.027] unit decrease	Affymetrix [321016] (imputed)	N
605	chr7	2749789	2749790	rs10257934	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	7p22.3	AMZ1	rs10257934-G	NR	3E-18		0.029809	[0.023-0.037] unit decrease	Affymetrix [323123] (imputed)	N
605	chr7	2750027	2750028	rs10229817	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	7p22.3	AMZ1	rs10229817-T	NR	3E-8		0.0193912	[0.013-0.026] unit increase	Affymetrix [323123] (imputed)	N
605	chr7	2750244	2750245	rs7798875	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	7p22.3	NR	rs7798875-?	NR	2E-9	(left lateral ventricle)			NR [9227495] (imputed)	N
605	chr7	2750244	2750245	rs7798875	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mode of anisotropy)	17,706 European ancestry individuals	NA	7p22.3	NR	rs7798875-?		4E-10	(Body of corpus callosum)			NR [8955960] (imputed)	N
605	chr7	2751039	2751040	rs7803527	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	7p22.3	NR	rs7803527-?	NR	3E-10	(left lateral ventricle)			NR [9227495] (imputed)	N
605	chr7	2751039	2751040	rs7803527	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	7p22.3	NR	rs7803527-?	NR	2E-8	(right lateral ventricle)			NR [9227495] (imputed)	N
605	chr7	2751039	2751040	rs7803527	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mode of anisotropy)	17,706 European ancestry individuals	NA	7p22.3	NR	rs7803527-?		2E-10	(Body of corpus callosum)			NR [8955960] (imputed)	N
605	chr7	2752151	2752152	rs798565	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	7p22.3	NR	rs798565-A	0.29	5E-10			[NR]	Affymetrix [9886854] (imputed)	N
605	chr7	2752151	2752152	rs798565	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	7p22.3	NR	rs798565-A	0.29	7E-10		0.92	[0.9-0.94]	Affymetrix [9886854] (imputed)	N
605	chr7	2752151	2752152	rs798565	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	7p22.3	NR	rs798565-A	0.29	4E-10			[NR]	Affymetrix [9886854] (imputed)	N
605	chr7	2752151	2752152	rs798565	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in non-current smokers	16,488 European ancestry cases, 169,688 European ancestry controls	NA	7p22.3	NR	rs798565-A	0.29	7E-10		0.92	[0.9-0.94]	Affymetrix [9886854] (imputed)	N
605	chr7	2752151	2752152	rs798565	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in ever smokers	12,446 European ancestry cases, 59,145 European ancestry controls	NA	7p22.3	NR	rs798565-A	0.29	5E-7		0.92	[0.89-0.95]	Affymetrix [9886854] (imputed)	N
605	chr7	2752151	2752152	rs798565	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	7p22.3	AMZ1	rs798565-G	0.71	4E-9		1.07	[1.04-1.09]	Affymetrix, Illumina [6224355] (imputed)	N
606	chr7	2753928	2753929	rs10950842	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	7p22.3	AMZ1	rs10950842-C	NR	7E-12		0.0194049	[0.014-0.025] unit increase	Affymetrix [321016] (imputed)	N
606	chr7	2754117	2754118	rs56399783	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	7p22.3	NR	rs56399783-?	NR	5E-6		0.0566	[0.032-0.081] unit decrease	Illumina [at least 560000] (imputed)	N
606	chr7	2755236	2755237	rs7797295	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	7p22.3	AMZ1	rs7797295-G	NR	9E-20		0.0259761	[0.02-0.032] unit decrease	Affymetrix [321016] (imputed)	N
606	chr7	2756140	2756140	rs3830624	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	7p22.3	AMZ1	rs3830624-T	NR	4E-15		0.0244324	[0.018-0.031] unit decrease	Affymetrix [323123] (imputed)	N
606	chr7	2756831	2756832	rs4719648	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	7p22.3	AMZ1, GNA12	rs4719648-C	0.576729	3E-13		0.019079	[0.014-0.024] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
606	chr7	2757866	2757867	rs798563	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	7p22.3	AMZ1	rs798563-C	0.300278	5E-15		0.018973928	[0.014-0.024] unit increase	Affymetrix [93095623] (imputed)	N
606	chr7	2757866	2757867	rs798563	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p22.3	NR	rs798563-C	0.290744	1E-14				Affymetrix, Illumina [23467995] (imputed)	N
606	chr7	2757866	2757867	rs798563	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	7p22.3	NR	rs798563-C	0.297123	3E-17		0.017561	[0.013-0.022] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
606	chr7	2758157	2758158	rs1184662	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	7p22.3	NR	rs1184662-?	NR	3E-8	(left lateral ventricle)			NR [9227495] (imputed)	N
606	chr7	2758223	2758224	rs798561	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	7p22.3	AMZ1	rs798561-T	NR	1E-9		0.0190357	[0.013-0.025] unit increase	Affymetrix [321114] (imputed)	N
606	chr7	2758223	2758224	rs798561	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	7p22.3	AMZ1	rs798561-T	NR	8E-15		0.0220029	[0.016-0.028] unit increase	Affymetrix [321016] (imputed)	N
606	chr7	2758223	2758224	rs798561	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	7p22.3	AMZ1	rs798561-T	NR	9E-13		0.0221143	[0.016-0.028] unit increase	Affymetrix [323123] (imputed)	N
606	chr7	2758981	2758982	rs798557	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	7p22.3		rs798557-A	0.261492	2E-44		0.0322633	[0.028-0.037] unit decrease	Illumina [13479295] (imputed)	N
606	chr7	2758981	2758982	rs798557	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	7p22.3	AMZ1, GNA12	rs798557-?	NR	3E-55		0.051120285	[0.045-0.058] unit decrease	Illumina [27896057] (imputed)	N
606	chr7	2759472	2759473	rs798555	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	7p22.3	NR	rs798555-C	0.294964	5E-20		0.018842	[0.015-0.023] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
606	chr7	2759472	2759473	rs798555	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	7p22.3		rs798555-?	NR	7E-20				NR [~ 8900000] (imputed)	N
606	chr7	2759794	2759795	rs798554	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	7p22.3	NR	rs798554-?	NR	8E-13		0.04796452	[0.035-0.061] unit decrease	Illumina [34656550] (imputed)	N
606	chr7	2759794	2759795	rs798554	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	7p22.3	AMZ1	rs798554-C	0.68	4E-23		1.24	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
606	chr7	2760007	2760008	rs4719654	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	7p22.3	AMZ1	rs4719654-C	NR	5E-11		0.0186669	[0.013-0.024] unit increase	Affymetrix [321016] (imputed)	N
606	chr7	2760007	2760008	rs4719654	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	7p22.3	AMZ1	rs4719654-C	0.441978	7E-10		0.01375683	[0.0094-0.0181] unit decrease	Affymetrix [93095623] (imputed)	N
606	chr7	2760337	2760338	rs798551	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mode of anisotropy)	17,706 European ancestry individuals	NA	7p22.3	NR	rs798551-?		2E-8	(Fornix (column and body))			NR [8955960] (imputed)	N
606	chr7	2760749	2760750	rs798549	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	7p22.3	AMZ1	rs798549-C	NR	2E-9		0.0192208	[0.013-0.026] unit increase	Affymetrix [321114] (imputed)	N
606	chr7	2760749	2760750	rs798549	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	7p22.3	AMZ1	rs798549-C	NR	1E-9		0.0194362	[0.013-0.026] unit increase	Affymetrix [321016] (imputed)	N
606	chr7	2760749	2760750	rs798549	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	7p22.3	NR	rs798549-C	0.282	1E-8		0.0295	[0.019-0.04] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
606	chr7	2760749	2760750	rs798549	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	7p22.3	NR	rs798549-?	NR	3E-8	(left lateral ventricle)			NR [9227495] (imputed)	N
606	chr7	2760749	2760750	rs798549	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mode of anisotropy)	17,706 European ancestry individuals	NA	7p22.3	NR	rs798549-?		2E-8	(Body of corpus callosum)			NR [8955960] (imputed)	N
606	chr7	2760934	2760935	rs798548	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	7p22.3		rs798548-C	0.31	2E-35		12.43	z score increase	Affymetrix [9061022] (imputed)	N
606	chr7	2760934	2760935	rs798548	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	7p22.3		rs798548-C	NR	1E-16		0.0177	[0.014-0.022] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
606	chr7	2760934	2760935	rs798548	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	7p22.3	AMZ1	rs798548-T	0.6994	3E-68		0.0359	[0.032-0.04] unit increase	Affymetrix [18391927] (imputed)	N
606	chr7	2760934	2760935	rs798548	31097437	Plotnikov D	2019-05-16	Br J Ophthalmol	Association between birth weight and refractive error in adulthood: a Mendelian randomisation study.	Birth weight	188,039 European ancestry individuals	NA	7p22.3	NR	rs798548-T	0.29	3E-9		0.021	[0.013-0.029] z score increase	Affymetrix [up to 10400000] (imputed)	N
606	chr7	2761152	2761153	rs10480003	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	7p22.3	AMZ1	rs10480003-G	NR	3E-13		0.0225302	[0.016-0.029] unit increase	Affymetrix [323123] (imputed)	N
606	chr7	2762385	2762386	rs798545	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	7p22.3	AMZ1	rs798545-C	0.700607	2E-9		0.0120008	[0.0081-0.0159] unit decrease	NR [13737936] (imputed)	N
606	chr7	2763101	2763102	rs798544	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	7p22.3	NR	rs798544-?	NR	1E-12		0.04746858	[0.034-0.061] unit decrease	Illumina [34656550] (imputed)	N
606	chr7	2763101	2763102	rs798544	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	7p22.3		rs798544-?	NR	1E-15				NR [~ 8900000] (imputed)	N
606	chr7	2763101	2763102	rs798544	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	7p22.3		rs798544-?	NR	2E-10		0.0139664	[0.0096-0.0184] unit decrease	Affymetrix [20259828] (imputed)	N
606	chr7	2763101	2763102	rs798544	18391951	Gudbjartsson DF	2008-04-06	Nat Genet	Many sequence variants affecting diversity of adult human height.	Height	30,968 European ancestry individuals	8,541 European ancestry individuals	7p22.3	GNA12	rs798544-G	0.72	7E-15		5.9	[6.03-8.77] % s.d. increase	Affymetrix, Illumina [up to 304226]	N
606	chr7	2764616	2764616	rs78018097	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	7p22.3	AMZ1	rs78018097-CA	0.297598	2E-16		0.019871647	[0.015-0.025] unit increase	Affymetrix [93095623] (imputed)	N
606	chr7	2764616	2764616	rs78018097	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	7p22.3	AMZ1	rs78018097-CA	0.297845	2E-20		0.022784326	[0.018-0.028] unit increase	Affymetrix [93095623] (imputed)	N
606	chr7	2766382	2766383	rs798536	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	7p22.3		rs798536-A	NR	2E-13		0.0187	[0.014-0.024] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
606	chr7	2767076	2767077	rs798535	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	7p22.3	AMZ1	rs798535-G	NR	6E-13		0.0308934	[0.022-0.039] unit increase	Affymetrix [323123] (imputed)	N
606	chr7	2767938	2767939	rs798533	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	7p22.3	NR	rs798533-?	NR	3E-15				Affymetrix [~ 8270000] (imputed)	N
606	chr7	2768863	2768864	rs798532	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	7p22.3	AMZ1, GNA12	rs798532-T	NR	7E-12		0.0234682	[0.017-0.03] unit increase	Affymetrix [323123] (imputed)	N
606	chr7	2770982	2770983	rs61758983	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7p22.3	NR	rs61758983-A	0.01568	7E-9	(LRG1)	0.04851	NR unit increase	Illumina [1671387] (imputed)	N
606	chr7	2770982	2770983	rs61758983	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7p22.3	NR	rs61758983-A	0.01568	7E-12	(EMILIN2)	0.1405	NR unit increase	Illumina [1671387] (imputed)	N
606	chr7	2770982	2770983	rs61758983	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7p22.3	NR	rs61758983-A	0.01568	3E-10	(HP)	4.579	NR unit increase	Illumina [1671387] (imputed)	N
606	chr7	2772430	2772431	rs798528	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	7p22.3	GNA12	rs798528-A	0.6847	9E-6	(EA, men)	0.0234	[0.013-0.034] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
606	chr7	2772430	2772431	rs798528	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	7p22.3	GNA12	rs798528-A	0.6847	2E-8	(EA)	0.0212	[0.014-0.029] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
606	chr7	2774788	2774789	rs208357	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	7p22.3	AMZ1, GNA12	rs208357-T	NR	1E-8		0.0203202	[0.013-0.027] unit increase	Affymetrix [323123] (imputed)	N
606	chr7	2775541	2775542	rs798526	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	7p22.3		rs798526-?	NR	2E-16				NR [~ 8900000] (imputed)	N
606	chr7	2775717	2775718	rs33932857	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	7p22.3	AMZ1, GNA12	rs33932857-A	0.3372	2E-7		0.0348	[0.022-0.048] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
606	chr7	2775824	2775825	rs208356	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	7p22.3	AMZ1, GNA12	rs208356-T	NR	2E-8		0.0190955	[0.012-0.026] unit increase	Affymetrix [321114] (imputed)	N
606	chr7	2775824	2775825	rs208356	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	7p22.3	AMZ1, GNA12	rs208356-T	NR	2E-17		0.0286821	[0.022-0.035] unit increase	Affymetrix [323123] (imputed)	N
606	chr7	2781248	2781249	rs3846991	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	7p22.3	AMZ1, GNA12	rs3846991-C	NR	4E-11		0.0198792	[0.014-0.026] unit increase	Affymetrix [321016] (imputed)	N
606	chr7	2782492	2782493	rs798513	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	7p22.3		rs798513-T	NR	5E-11		0.0113	[0.008-0.0146] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
606	chr7	2783305	2783306	rs798511	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	7p22.3	NR	rs798511-?	NR	6E-9	(X4th ventricle)			NR [9227495] (imputed)	N
606	chr7	2783337	2783338	rs798510	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (min-P)	26,502 European ancestry individuals	NA	7p22.3	AL162431.1, STX6, MR1, IER5	rs798510-?		1E-13				NR [7428630] (imputed)	N
606	chr7	2783337	2783338	rs798510	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	7p22.3	TNS1	rs798510-?		1E-13				NR [7428630] (imputed)	N
606	chr7	2783337	2783338	rs798510	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (min-P)	26,502 European ancestry individuals	NA	7p22.3	SIX3	rs798510-?		4E-13				NR [7428630] (imputed)	N
606	chr7	2788911	2788912	rs798506	34006833	Elvsashagen T	2021-05-18	Nat Commun	The genetic architecture of the human thalamus and its overlap with ten common brain disorders.	Medial thalamic nuclei volume	30,114 white British ancestry individuals			AMZ1, GNA12	rs798506-C	0.2923	5E-9		0.0526261	[0.035-0.07] unit decrease	Affymetrix [8165723] (imputed)	N
606	chr7	2789703	2789704	rs798503	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	7p22.3		rs798503-A	NR	1E-9		0.01	[0.0069-0.0131] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
606	chr7	2789703	2789704	rs798503	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p22.3	NR	rs798503-A	0.405318	3E-10				Affymetrix, Illumina [24653286] (imputed)	N
606	chr7	2789879	2789880	rs798502	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in non-smokers	77,113 European ancestry women, 47,319 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	7p22.3	GNA12	rs798502-A	0.7108	3E-6	(men)	0.0309	[0.018-0.044] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
606	chr7	2789879	2789880	rs798502	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	7p22.3	GNA12	rs798502-A	0.7108	6E-6				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
606	chr7	2789879	2789880	rs798502	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	7p22.3	GNA12	rs798502-A	0.7108	1E-6	(men)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
606	chr7	2789879	2789880	rs798502	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	7p22.3	GNA12	rs798502-A	0.7108	2E-7	(men)	0.0298	[0.019-0.041] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
606	chr7	2789879	2789880	rs798502	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Ulcerative colitis	12,366 European and unknown ancestry cases, 33,609 European and unknown ancestry controls	NA	7p22.3	AMZ1, GNA12	rs798502-?		4E-11				Illumina [9578670] (imputed)	N
606	chr7	2789879	2789880	rs798502	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	7p22.3	AMZ1, GNA12	rs798502-?		2E-7				Illumina [9725440] (imputed)	N
606	chr7	2789879	2789880	rs798502	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	7p22.3	GNA12	rs798502-A	0.6955	3E-11	(EA)	0.0243	[0.017-0.032] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
606	chr7	2789879	2789880	rs798502	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	7p22.3	GNA12	rs798502-A	0.6955	1E-10	(EA, men)	0.0331	[0.023-0.043] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
606	chr7	2789879	2789880	rs798502	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Ulcerative colitis	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls	7p22.3	GNA12, CARD11, TTYH3	rs798502-A	0.709	6E-17		1.127	[1.084-1.171]	Affymetrix, Illumina [1230000] (imputed)	N
606	chr7	2789879	2789880	rs798502	21297633	Anderson CA	2011-02-06	Nat Genet	Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47.	Ulcerative colitis	6,687 European ancestry cases, 19,718 European ancestry controls	9,628 European ancestry cases, 12,917 European ancestry controls	7p22.3	GNA12	rs798502-A	0.71	3E-15		1.13	[1.08-1.18]	Affymetrix, Illumina [~ 1100000] (imputed)	N
606	chr7	2791033	2791033	rs529794364	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	7p22.3	NR	rs529794364-?	NR	1E-13	(right lateral ventricle)			NR [9227495] (imputed)	N
606	chr7	2795881	2795882	rs798498	31681408	Yang XL	2019-10-11	Front Genet	Three Novel Loci for Infant Head Circumference Identified by a Joint Association Analysis.	Birth weight (MTAG)	up to 182,902 European ancestry individuals	NA	7p22.3	NR	rs798498-T	0.69	3E-8		0.022840459	[0.015-0.031] unit increase	NR [1977400] (imputed)	N
606	chr7	2795956	2795957	rs798497	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	7p22.3	AMZ1, GNA12	rs798497-?		1E-17				NR [7428630] (imputed)	N
606	chr7	2795956	2795957	rs798497	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mode of anisotropy)	17,706 European ancestry individuals	NA	7p22.3	NR	rs798497-?		2E-11	(Retrolenticular part of internal capsule)			NR [8955960] (imputed)	N
606	chr7	2795956	2795957	rs798497	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	7p22.3	NR	rs798497-?	NR	1E-12		0.04761566	[0.034-0.061] unit decrease	Illumina [34656550] (imputed)	N
606	chr7	2795956	2795957	rs798497	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	7p22.3	GNA12	rs798497-A	0.6907	7E-13	(EA,men)	0.0395	[0.029-0.05] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
606	chr7	2795956	2795957	rs798497	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	7p22.3	GNA12	rs798497-A	0.6907	4E-20	(EA)	0.0354	[0.028-0.043] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
606	chr7	2795956	2795957	rs798497	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	7p22.3	GNA12	rs798497-A	0.6907	1E-10	(EA, women)	0.0316	[0.022-0.041] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
606	chr7	2795956	2795957	rs798497	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	7p22.3	GNA12	rs798497-A	0.698	2E-71		0.057	[0.051-0.063] unit increase	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
606	chr7	2795956	2795957	rs798497	20189936	Okada Y	2010-02-26	Hum Mol Genet	A genome-wide association study in 19 633 Japanese subjects identified LHX3-QSOX2 and IGF1 as adult height loci.	Height	19,633 Japanese ancestry individuals	NA	7p22.3	GNA12	rs798497-G	0.27	7E-7		0.06	[0.04-0.08] cm decrease	Illumina [420885]	N
606	chr7	2796762	2796763	rs798496	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	7p22.3	AMZ1, GNA12	rs798496-T	NR	8E-39		0.0399371	[0.034-0.046] unit decrease	Affymetrix [321016] (imputed)	N
606	chr7	2797266	2797267	rs798495	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical thickness (MOSTest)	26,502 European ancestry individuals	NA	7p22.3	SLC45A3, NUCKS1, AC119673.1, RAB7L1, SLC41A1, PM20D1	rs798495-?		5E-12				NR [7428630] (imputed)	N
606	chr7	2799685	2799686	rs208346	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	7p22.3	AMZ1, GNA12	rs208346-T	NR	3E-9		0.0172662	[0.012-0.023] unit increase	Affymetrix [321114] (imputed)	N
606	chr7	2799685	2799686	rs208346	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	7p22.3	AMZ1, GNA12	rs208346-T	NR	1E-11		0.0214496	[0.015-0.028] unit increase	Affymetrix [321114] (imputed)	N
606	chr7	2799685	2799686	rs208346	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	7p22.3	AMZ1, GNA12	rs208346-T	NR	4E-14		0.02178	[0.016-0.027] unit increase	Affymetrix [321016] (imputed)	N
606	chr7	2799685	2799686	rs208346	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	7p22.3	AMZ1, GNA12	rs208346-T	NR	3E-14		0.0238785	[0.018-0.03] unit increase	Affymetrix [323123] (imputed)	N
606	chr7	2799685	2799686	rs208346	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mode of anisotropy)	17,706 European ancestry individuals	NA	7p22.3	NR	rs208346-?		2E-9	(Body of corpus callosum)			NR [8955960] (imputed)	N
606	chr7	2799685	2799686	rs208346	27629369	Gao J	2016-09-15	Neuropsychopharmacology	Genome-Wide Association Study of Loneliness Demonstrates a Role for Common Variation.	Loneliness (linear analysis)	8,490 European ancestry individuals, 1,228 African American individuals, 867 Hispanic American individuals, 175 individuals	NA	7p22.3	GNA12	rs208346-?		7E-6	(EA)	0.115	[0.065-0.165] unit decrease	Illumina [7205781] (imputed)	N
606	chr7	2800520	2800521	rs798491	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	7p22.3	AMZ1, GNA12	rs798491-G	0.291624	3E-43	(females)	0.04779	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
606	chr7	2800520	2800521	rs798491	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	7p22.3	AMZ1, GNA12	rs798491-G	0.291624	1E-38		0.03345	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
606	chr7	2800520	2800521	rs798491	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	7p22.3	AMZ1, GNA12	rs798491-G	0.291624	4E-37	(females)	0.0438	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
606	chr7	2800520	2800521	rs798491	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	7p22.3	AMZ1, GNA12	rs798491-G	0.291624	3E-40		0.03362	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
606	chr7	2800520	2800521	rs798491	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	7p22.3	AMZ1, GNA12	rs798491-G	0.291624	1E-8	(males)	0.02099	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
606	chr7	2800520	2800521	rs798491	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7p22.3		rs798491-?	NR	2E-241				NR [~ 8900000] (imputed)	N
606	chr7	2801541	2801542	rs798490	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	7p22.3		rs798490-A	NR	1E-168		0.0391	[0.036-0.042] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
606	chr7	2801802	2801803	rs798489	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	7p22.3	NR	rs798489-?	NR	2E-8		0.04742737	[0.031-0.064] unit decrease	Illumina [34656550] (imputed)	N
606	chr7	2801802	2801803	rs798489	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	7p22.3	AMZ1	rs798489-C	0.7155	8E-8		0.0221	[0.014-0.03] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
606	chr7	2801802	2801803	rs798489	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	7p22.3	AMZ1	rs798489-C	0.7155	2E-8	(men)	0.0342	[0.022-0.046] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
606	chr7	2801802	2801803	rs798489	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	7p22.3	AMZ1	rs798489-C	0.7155	1E-7	(women)	0.0318	[0.02-0.044] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
606	chr7	2801802	2801803	rs798489	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	7p22.3	AMZ1	rs798489-C	0.7105	9E-8	(EA)	0.0222	[0.014-0.03] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
606	chr7	2801802	2801803	rs798489	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	7p22.3	AMZ1	rs798489-C	0.7105	5E-8	(EA, men)	0.0337	[0.022-0.046] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
606	chr7	2801802	2801803	rs798489	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	7p22.3	AMZ1	rs798489-C	0.7166	7E-6	(women)	0.0308	[0.017-0.044] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
606	chr7	2801802	2801803	rs798489	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	7p22.3	AMZ1	rs798489-C	0.7155	2E-6		0.0222	[0.013-0.031] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
606	chr7	2801802	2801803	rs798489	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	7p22.3	AMZ1	rs798489-C	0.7130000000000001	1E-6	(men)	0.0329	[0.02-0.046] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
606	chr7	2801802	2801803	rs798489	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	7p22.3	AMZ1	rs798489-C	0.7105	3E-6	(EA)	0.0223	[0.013-0.032] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
606	chr7	2801802	2801803	rs798489	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	7p22.3	AMZ1	rs798489-C	0.7093	3E-6	(EA, men)	0.0318	[0.018-0.045] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
606	chr7	2801802	2801803	rs798489	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	7p22.3	AMZ1	rs798489-?	0.7155	8E-7	(women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
606	chr7	2801802	2801803	rs798489	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	7p22.3	AMZ1	rs798489-?	0.7155	6E-8	(men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
606	chr7	2801802	2801803	rs798489	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	7p22.3	AMZ1	rs798489-?	0.7155	4E-7				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
606	chr7	2801802	2801803	rs798489	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	7p22.3	AMZ1	rs798489-?	0.7105	7E-7	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
606	chr7	2801802	2801803	rs798489	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	7p22.3	AMZ1	rs798489-?	0.7105	2E-7	(EA, men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
606	chr7	2801802	2801803	rs798489	27680694	Horikoshi M	2016-10-13	Nature	Genome-wide associations for birth weight and correlations with adult disease.	Birth weight	133,903 European ancestry individuals, 6,635 African American individuals, 420 Turkish ancestry individuals, 365 Moroccan ancestry individuals, 395 Surinamese ancestry individuals, 840 Chinese ancestry individuals.	9,799 European ancestry individuals, 1,449 Filipino ancestry individuals.	7p22.3	GNA12	rs798489-C	0.73	5E-9		0.024	[0.016-0.032] unit increase	Affymetrix, Illumina [at least 22434434] (imputed)	N
606	chr7	2801802	2801803	rs798489	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	7p22.3	GNA12	rs798489-T	0.3	2E-33		0.048	[NR] unit decrease	Affymetrix, Illumina [2834208] (imputed)	N
606	chr7	2802521	2802522	rs798488	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 117)	19,670 European ancestry individuals	NA	7p22.3		rs798488-?	NR	9E-11				NR [9705931] (imputed)	N
606	chr7	2803877	2803878	rs148918599	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	7p22.3	NR	rs148918599-?	NR	6E-9	(X3rd ventricle)			NR [9227495] (imputed)	N
606	chr7	2803882	2803883	rs368699386	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	7p22.3	NR	rs368699386-?	NR	2E-13	(X3rd ventricle)			NR [9227495] (imputed)	N
606	chr7	2803882	2803883	rs368699386	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	7p22.3	NR	rs368699386-?	NR	1E-15	(left lateral ventricle)			NR [9227495] (imputed)	N
606	chr7	2803882	2803883	rs368699386	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mode of anisotropy)	17,706 European ancestry individuals	NA	7p22.3	NR	rs368699386-?		1E-8	(Posterior corona radiata )			NR [8955960] (imputed)	N
606	chr7	2803882	2803883	rs368699386	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	7p22.3	NR	rs368699386-?		7E-10	(Superior corona radiata)			NR [8955960] (imputed)	N
606	chr7	2805515	2805515	rs398110973	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	7p22.3	AMZ1, GNA12	rs398110973-G	0.7135	3E-6		0.0353	[0.021-0.05] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
606	chr7	2808323	2808324	rs13240877	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	7p22.3	AMZ1, GNA12	rs13240877-C	NR	3E-9		0.024486	[0.016-0.033] unit increase	Affymetrix [321016] (imputed)	N
606	chr7	2810745	2810746	rs1182207	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	7p22.3		rs1182207-A	NR	9E-37		0.023	[0.019-0.027] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
606	chr7	2812631	2812632	rs35957220	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	7p22.3	NR	rs35957220-?	NR	5E-31				Affymetrix [~ 8270000] (imputed)	N
606	chr7	2812631	2812632	rs35957220	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	7p22.3	NR	rs35957220-?	NR	7E-9	(female)	0.15247	[0.1-0.2] unit decrease	Affymetrix [7794483] (imputed)	N
606	chr7	2812631	2812632	rs35957220	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	7p22.3	NR	rs35957220-?	NR	5E-25		0.2482	[0.2-0.3] unit decrease	Affymetrix [7794483] (imputed)	N
606	chr7	2812631	2812632	rs35957220	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	7p22.3	NR	rs35957220-?	NR	2E-17	(male)	0.32233	[0.25-0.4] unit decrease	Affymetrix [7794483] (imputed)	N
606	chr7	2814270	2814271	rs7777484	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	7p22.3	NR	rs7777484-?	NR	2E-6		0.02848537	[0.017-0.04] unit decrease	Illumina [34656550] (imputed)	N
606	chr7	2814270	2814271	rs7777484	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	7p22.3	GNA12	rs7777484-A	0.78	4E-27		0.059	[0.045-0.073] unit increase	Affymetrix, Illumina [2704730] (imputed)	N
606	chr7	2817454	2817455	rs13243214	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	7p22.3		rs13243214-G	0.701	1E-22				Affymetrix [10369434] (imputed)	N
606	chr7	2819726	2819727	rs7784066	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	7p22.3		rs7784066-A	0.3	8E-45		14.05	z score increase	Affymetrix [9061022] (imputed)	N
606	chr7	2819726	2819727	rs7784066	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	7p22.3	NR	rs7784066-A	0.3044	1E-17				NR [9056863] (imputed)	N
606	chr7	2819726	2819727	rs7784066	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	7p22.3	NR	rs7784066-A	0.3044	1E-17				NR [9056863] (imputed)	N
606	chr7	2819726	2819727	rs7784066	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mode of anisotropy)	17,706 European ancestry individuals	NA	7p22.3	NR	rs7784066-?		6E-16	(Body of corpus callosum)			NR [8955960] (imputed)	N
606	chr7	2819726	2819727	rs7784066	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	7p22.3	NR	rs7784066-?		1E-10	(Fornix (column and body))			NR [8955960] (imputed)	N
606	chr7	2822985	2822986	rs2260230	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p22.3	NR	rs2260230-A	0.281279	1E-37				Affymetrix, Illumina [24588908] (imputed)	N
606	chr7	2822985	2822986	rs2260230	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	7p22.3	NR	rs2260230-A	0.292274	2E-37		0.025803	[0.022-0.03] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
606	chr7	2825655	2825656	rs13226653	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7p22.3		rs13226653-?	NR	1E-9				NR [~ 8900000] (imputed)	N
606	chr7	2827786	2827786	rs571208715	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	7p22.3	NR	rs571208715-?	NR	1E-11	(right lateral ventricle)			NR [9227495] (imputed)	N
606	chr7	2830497	2830498	rs7790322	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	7p22.3	GNA12	rs7790322-T	NR	5E-10		0.0179787	[0.012-0.024] unit decrease	Affymetrix [321114] (imputed)	N
606	chr7	2830497	2830498	rs7790322	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	7p22.3	GNA12	rs7790322-T	NR	5E-28		0.0313434	[0.026-0.037] unit decrease	Affymetrix [321016] (imputed)	N
606	chr7	2832972	2832973	rs2644307	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	7p22.3	GNA12	rs2644307-A	NR	1E-17		0.0267817	[0.021-0.033] unit decrease	Affymetrix [321114] (imputed)	N
606	chr7	2832972	2832973	rs2644307	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	7p22.3	GNA12	rs2644307-A	NR	1E-29		0.0351358	[0.029-0.041] unit decrease	Affymetrix [323123] (imputed)	N
606	chr7	2832972	2832973	rs2644307	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	7p22.3	NR	rs2644307-?	NR	7E-10	(left lateral ventricle)			NR [9227495] (imputed)	N
606	chr7	2832972	2832973	rs2644307	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	7p22.3	NR	rs2644307-?	NR	5E-8	(X3rd ventricle)			NR [9227495] (imputed)	N
606	chr7	2832972	2832973	rs2644307	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mode of anisotropy)	17,706 European ancestry individuals	NA	7p22.3	NR	rs2644307-?		3E-11	(Body of corpus callosum)			NR [8955960] (imputed)	N
606	chr7	2832972	2832973	rs2644307	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	7p22.3	NR	rs2644307-?		2E-8	(Fornix (column and body))			NR [8955960] (imputed)	N
606	chr7	2834868	2834869	rs2533886	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	7p22.3	GNA12	rs2533886-C	NR	4E-12		0.0214952	[0.015-0.028] unit increase	Affymetrix [321114] (imputed)	N
606	chr7	2834868	2834869	rs2533886	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	7p22.3	GNA12	rs2533886-C	NR	8E-26		0.0323827	[0.026-0.038] unit increase	Affymetrix [323123] (imputed)	N
606	chr7	2836018	2836019	rs757786	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	7p22.3	GNA12	rs757786-C	NR	2E-14		0.0217768	[0.016-0.027] unit increase	Affymetrix [321016] (imputed)	N
606	chr7	2836847	2836848	rs2533884	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	7p22.3	GNA12	rs2533884-G	NR	1E-23		0.0338498	[0.027-0.04] unit decrease	Affymetrix [321114] (imputed)	N
606	chr7	2841163	2841164	rs2644312	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	7p22.2	GNA12	rs2644312-G	0.71	3E-11		1.06	[1.05-1.07]	Illumina [at least 560000] (imputed)	N
606	chr7	2841163	2841164	rs2644312	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	7p22.2	GNA12	rs2644312-?	NR	3E-11		1.061	[1.043-1.080]	Illumina [13757430] (imputed)	N
606	chr7	2844540	2844540	rs529954825	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mode of anisotropy)	17,706 European ancestry individuals	NA	7p22.2	NR	rs529954825-?		4E-9	(Body of corpus callosum)			NR [8955960] (imputed)	N
606	chr7	2844540	2844540	rs529954825	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mode of anisotropy)	17,706 European ancestry individuals	NA	7p22.2	NR	rs529954825-?		4E-8	(Retrolenticular part of internal capsule)			NR [8955960] (imputed)	N
606	chr7	2852289	2852290	rs771273709	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	7p22.2	GNA12	rs771273709-A	0.0641	5E-12		0.0331	[0.024-0.043] unit decrease	Affymetrix [18391927] (imputed)	N
606	chr7	2852289	2852290	rs771273709	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	7p22.2	GNA12	rs771273709-A	0.0637	9E-9		0.102	[0.067-0.137] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
606	chr7	2857410	2857411	rs6978692	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	7p22.2	GNA12	rs6978692-T	NR	2E-18		0.0248774	[0.019-0.03] unit decrease	Affymetrix [321016] (imputed)	N
606	chr7	2862890	2862891	rs2266925	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	7p22.2	GNA12	rs2266925-T	NR	1E-8		0.0202193	[0.013-0.027] unit increase	Affymetrix [321114] (imputed)	N
606	chr7	2862890	2862891	rs2266925	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	7p22.2	GNA12	rs2266925-T	0.2603	5E-9		0.0426	[0.028-0.057] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
606	chr7	2863288	2863289	rs1182197	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	7p22.2	GNA12	rs1182197-C	0.377134	1E-10		0.014991197	[0.01-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
606	chr7	2863288	2863289	rs1182197	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	7p22.2	NR	rs1182197-?	NR	6E-9	(X3rd ventricle)			NR [9227495] (imputed)	N
606	chr7	2863288	2863289	rs1182197	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	7p22.2	NR	rs1182197-?	NR	3E-9	(left lateral ventricle)			NR [9227495] (imputed)	N
606	chr7	2863288	2863289	rs1182197	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	7p22.2	NR	rs1182197-?	NR	1E-8	(right lateral ventricle)			NR [9227495] (imputed)	N
606	chr7	2863573	2863574	rs2107964	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical thickness (min-P)	26,502 European ancestry individuals	NA	7p22.2	DMRTA2, FAF1, CDKN2C	rs2107964-?		9E-11				NR [7428630] (imputed)	N
606	chr7	2864585	2864586	rs1636264	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	7p22.2	GNA12	rs1636264-T	NR	2E-11		0.0206428	[0.015-0.027] unit decrease	Affymetrix [321114] (imputed)	N
606	chr7	2866477	2866478	rs1182196	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	7p22.2	GNA12	rs1182196-G	0.4249	3E-14		0.02813604	[0.021-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
606	chr7	2867557	2867557	rs3837080	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	7p22.2	GNA12	rs3837080-AT	NR	5E-43		0.046071	[0.04-0.053] unit decrease	Affymetrix [323123] (imputed)	N
606	chr7	2869984	2869985	rs1182188	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	7p22.2	NR	rs1182188-C	0.300217	2E-11		0.014078	[0.01-0.0182] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
606	chr7	2869984	2869985	rs1182188	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	7p22.2	NR	rs1182188-?	NR	2E-11		0.04448152	[0.031-0.058] unit decrease	Illumina [34656550] (imputed)	N
606	chr7	2869984	2869985	rs1182188	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	7p22.2	GNA12	rs1182188-?	NR	4E-11	(subset analysis)			Illumina [130052]	N
606	chr7	2869984	2869985	rs1182188	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	7p22.2	NR	rs1182188-A	0.7	5E-15	(EA)	1.1136187		Affymetrix, Illumina [~ 9000000] (imputed)	N
606	chr7	2869984	2869985	rs1182188	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	7p22.2	NR	rs1182188-A	0.7	1E-9	(EA)	1.068123		Affymetrix, Illumina [~ 9000000] (imputed)	N
606	chr7	2869984	2869985	rs1182188	19343178	Soranzo N	2009-04-03	PLoS Genet	Meta-analysis of genome-wide scans for human adult stature identifies novel Loci and associations with measures of skeletal frame size.	Height	12,611 European ancestry individuals	7,187 European ancestry individuals	7p22.2	GNA12	rs1182188-?	0.27	3E-9		0.07	[0.04-0.10] s.d. increase	Illumina [229216]	N
606	chr7	2870587	2870588	rs3831679	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	7p22.2	GNA12	rs3831679-G	0.2963	2E-19		0.0629	[0.049-0.077] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
606	chr7	2871038	2871038	rs3996402	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	7p22.2	GNA12	rs3996402-CT	NR	7E-15		0.0246554	[0.018-0.031] unit decrease	Affymetrix [321114] (imputed)	N
606	chr7	2871055	2871055	rs71026567	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	7p22.2	GNA12	rs71026567-CT	0.4057	3E-9		0.02169973	[0.015-0.029] unit increase	Affymetrix [~ 2500000] (imputed)	N
606	chr7	2871087	2871092	rs143078860	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	7p22.2		rs143078860-G	NR	1E-10		0.0152	[0.011-0.02] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
606	chr7	2873135	2873136	rs1182183	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p22.2	NR	rs1182183-T	0.283854	2E-10				Affymetrix, Illumina [23114412] (imputed)	N
606	chr7	2873233	2873234	rs1182182	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p22.2	NR	rs1182182-T	0.282124	7E-20				Affymetrix, Illumina [24649327] (imputed)	N
606	chr7	2873278	2873279	rs1182180	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	7p22.2	GNA12	rs1182180-T	0.4316	2E-15		0.02924075	[0.022-0.036] unit increase	Affymetrix [~ 2500000] (imputed)	N
606	chr7	2874981	2874982	rs17132744	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or recurrent major depressive disorder x sex interaction (3df)	31,567 European ancestry schizophrenia cases,19,924 European ancestry bipolar disorder cases, 5,314 European ancestry recurrent major depressive disorder cases, 78,190 European ancestry controls, 1,836 East Asian ancestry schizophrenia cases, 3,383 East Asian ancestry controls	NA	7p22.2	NR	rs17132744-C	NR	4E-6				NR [NR] (imputed)	N
606	chr7	2874981	2874982	rs17132744	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or recurrent major depressive disorder x sex interaction (3df)	31,567 European ancestry schizophrenia cases,19,924 European ancestry bipolar disorder cases, 5,314 European ancestry recurrent major depressive disorder cases, 78,190 European ancestry controls	NA	7p22.2	NR	rs17132744-C	NR	4E-6				NR [NR] (imputed)	N
606	chr7	2874981	2874982	rs17132744	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia x sex interaction	31,567 European ancestry cases, 37,494 European ancestry controls, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	NA	7p22.2	GNA12	rs17132744-T	0.8692	1E-5		0.163	[0.091-0.235] unit increase	NR [NR] (imputed)	N
606	chr7	2874981	2874982	rs17132744	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia x sex interaction	31,567 European ancestry cases, 37,494 European ancestry controls	NA	7p22.2	GNA12	rs17132744-T	0.8692	1E-5		0.163	[0.091-0.235] unit increase	NR [NR] (imputed)	N
606	chr7	2878876	2878876	rs574392601	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	7p22.2		rs574392601-CT	NR	1E-32		0.0252	[0.021-0.029] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
606	chr7	2881549	2881550	rs73033411	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or major depressive disorder x sex interaction (3df)	31,567 European ancestry schizophrenia cases,19,924 European ancestry  bipolar disorder cases, 15,970 European ancestry major depressive disorder cases, 93,025 European ancestry controls, 1,836 East Asian ancestry schizophrenia cases, 3,383 East Asian ancestry controls	NA	7p22.2	NR	rs73033411-C	NR	6E-6				NR [NR] (imputed)	N
606	chr7	2881549	2881550	rs73033411	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or major depressive disorder x sex interaction (3df)	31,567 European ancestry schizophrenia cases,19,924 European ancestry  bipolar disorder cases, 15,970 European ancestry major depressive disorder cases, 93,025 European ancestry controls	NA	7p22.2	NR	rs73033411-C	NR	7E-6				NR [NR] (imputed)	N
606	chr7	2881717	2881726	rs201517448	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	7p22.2	GNA12	rs201517448-G	0.0517	8E-7		0.1023	[0.062-0.143] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
606	chr7	2881731	2881732	rs577734383	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	7p22.2	GNA12	rs577734383-A	0.235981	3E-10		0.017288618	[0.012-0.023] unit increase	Affymetrix [93095623] (imputed)	N
607	chr7	2884432	2884433	rs1636250	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mode of anisotropy)	17,706 European ancestry individuals	NA	7p22.2	NR	rs1636250-?		2E-8	(Superior corona radiata)			NR [8955960] (imputed)	N
607	chr7	2884432	2884433	rs1636250	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	7p22.2	NR	rs1636250-?		8E-9	(Superior corona radiata)			NR [8955960] (imputed)	N
607	chr7	2884719	2884720	rs1636251	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	7p22.2	GNA12	rs1636251-C	NR	3E-33		0.0374535	[0.031-0.044] unit decrease	Affymetrix [323123] (imputed)	N
607	chr7	2884719	2884720	rs1636251	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	7p22.2	NR	rs1636251-?	NR	3E-8	(left lateral ventricle)			NR [9227495] (imputed)	N
607	chr7	2886265	2886266	rs13241955	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	7p22.2	GNA12	rs13241955-C	0.337934	3E-19		0.021864403	[0.017-0.027] unit increase	Affymetrix [93095623] (imputed)	N
607	chr7	2886265	2886266	rs13241955	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	7p22.2	NR	rs13241955-?	NR	2E-10	(X3rd ventricle)			NR [9227495] (imputed)	N
607	chr7	2893338	2893339	rs1639065	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	7p22.2	GNA12	rs1639065-C	NR	2E-10		0.020723	[0.014-0.027] unit decrease	Affymetrix [323858] (imputed)	N
607	chr7	2901601	2901601	rs562439614	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	7p22.2	NR	rs562439614-?		2E-8	(Superior corona radiata)			NR [8955960] (imputed)	N
607	chr7	2904671	2904672	rs1183079	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	7p22.2	GNA12	rs1183079-A	NR	1E-13		0.0236407	[0.017-0.03] unit decrease	Affymetrix [321114] (imputed)	N
607	chr7	2904671	2904672	rs1183079	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	7p22.2	GNA12	rs1183079-A	NR	2E-17		0.0247471	[0.019-0.03] unit decrease	Affymetrix [321016] (imputed)	N
607	chr7	2904671	2904672	rs1183079	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	7p22.2	GNA12	rs1183079-A	NR	5E-26		0.0334234	[0.027-0.04] unit decrease	Affymetrix [323123] (imputed)	N
607	chr7	2904671	2904672	rs1183079	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mode of anisotropy)	17,706 European ancestry individuals	NA	7p22.2	NR	rs1183079-?		4E-10	(Retrolenticular part of internal capsule)			NR [8955960] (imputed)	N
607	chr7	2904671	2904672	rs1183079	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mode of anisotropy)	17,706 European ancestry individuals	NA	7p22.2	NR	rs1183079-?		1E-9	(Body of corpus callosum)			NR [8955960] (imputed)	N
607	chr7	2904927	2904928	rs2527521	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	7p22.2	GNA12	rs2527521-G	NR	2E-8		0.0159603	[0.01-0.022] unit increase	Affymetrix [321016] (imputed)	N
607	chr7	2905018	2905019	rs56056318	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	7p22.2	GNA12	rs56056318-T	NR	1E-8		0.0182307	[0.012-0.025] unit increase	Affymetrix [321114] (imputed)	N
607	chr7	2905018	2905019	rs56056318	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	7p22.2	GNA12	rs56056318-T	NR	3E-18		0.0276922	[0.021-0.034] unit increase	Affymetrix [323123] (imputed)	N
607	chr7	2909224	2909225	rs1182151	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	7p22.2		rs1182151-G	0.28	3E-43		13.79	z score increase	Affymetrix [9061022] (imputed)	N
607	chr7	2910658	2910659	rs73033497	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or recurrent major depressive disorder x sex interaction (3df)	31,567 European ancestry schizophrenia cases,19,924 European ancestry bipolar disorder cases, 5,314 European ancestry recurrent major depressive disorder cases, 78,190 European ancestry controls, 1,836 East Asian ancestry schizophrenia cases, 3,383 East Asian ancestry controls	NA	7p22.2	NR	rs73033497-T	NR	4E-6				NR [NR] (imputed)	N
607	chr7	2910658	2910659	rs73033497	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or recurrent major depressive disorder x sex interaction (3df)	31,567 European ancestry schizophrenia cases,19,924 European ancestry bipolar disorder cases, 5,314 European ancestry recurrent major depressive disorder cases, 78,190 European ancestry controls	NA	7p22.2	NR	rs73033497-T	NR	4E-6				NR [NR] (imputed)	N
607	chr7	2910658	2910659	rs73033497	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or recurrent major depressive disorder x sex interaction	31,567 European ancestry schizophrenia cases,19,924 European ancestry bipolar disorder cases, 5,314 European ancestry recurrent major depressive disorder cases, 78,190 European ancestry controls, 1,836 East Asian ancestry schizophrenia cases, 3,383 East Asian ancestry controls	NA	7p22.2	GNA12, CARD11	rs73033497-A	0.8635	6E-7		0.2667	[0.16-0.37] unit increase	NR [NR] (imputed)	N
607	chr7	2910658	2910659	rs73033497	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or recurrent major depressive disorder x sex interaction	31,567 European ancestry schizophrenia cases,19,924 European ancestry bipolar disorder cases, 5,314 European ancestry recurrent major depressive disorder cases, 78,190 European ancestry controls	NA	7p22.2	GNA12, CARD11	rs73033497-A	0.8635	6E-7		0.2667	[0.16-0.37] unit increase	NR [NR] (imputed)	N
607	chr7	2910658	2910659	rs73033497	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or major depressive disorder x sex interaction (3df)	31,567 European ancestry schizophrenia cases,19,924 European ancestry  bipolar disorder cases, 15,970 European ancestry major depressive disorder cases, 93,025 European ancestry controls, 1,836 East Asian ancestry schizophrenia cases, 3,383 East Asian ancestry controls	NA	7p22.2	NR	rs73033497-T	NR	4E-6				NR [NR] (imputed)	N
607	chr7	2910658	2910659	rs73033497	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or major depressive disorder x sex interaction (3df)	31,567 European ancestry schizophrenia cases,19,924 European ancestry  bipolar disorder cases, 15,970 European ancestry major depressive disorder cases, 93,025 European ancestry controls	NA	7p22.2	GNA12, CARD11	rs73033497-T	NR	4E-6			[NR]	NR [NR] (imputed)	N
607	chr7	2910658	2910659	rs73033497	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or major depressive disorder x sex interaction	31,567 European ancestry schizophrenia cases,19,924 European ancestry  bipolar disorder cases, 15,970 European ancestry major depressive disorder cases, 93,025 European ancestry controls, 1,836 East Asian ancestry schizophrenia cases, 3,383 East Asian ancestry controls	NA	7p22.2	GNA12, CARD11	rs73033497-A	0.8644	9E-7		0.2462	[0.15-0.34] unit increase	NR [NR] (imputed)	N
607	chr7	2910658	2910659	rs73033497	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or major depressive disorder x sex interaction	31,567 European ancestry schizophrenia cases,19,924 European ancestry  bipolar disorder cases, 15,970 European ancestry major depressive disorder cases, 93,025 European ancestry controls	NA	7p22.2	GNA12, CARD11	rs73033497-A	NR	9E-7		0.2462	[0.15-0.34] unit increase	NR [NR] (imputed)	N
607	chr7	2911497	2911498	rs56343587	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	7p22.2	GNA12	rs56343587-T	0.7168	1E-7		0.0377	[0.024-0.052] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
607	chr7	2911971	2911972	rs1182144	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	7p22.2	GNA12	rs1182144-A	NR	2E-16		0.0256236	[0.02-0.032] unit increase	Affymetrix [323123] (imputed)	N
607	chr7	2912927	2912928	rs1182143	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	7p22.2	NR	rs1182143-?	NR	1E-12	(left lateral ventricle)			NR [9227495] (imputed)	N
607	chr7	2913700	2913701	rs883831	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid pneumonia vs population)	1,004 European ancestry cases, 680,354 European ancestry controls, 218 Hispanic or Latin American cases, 94,318 Hispanic or Latin American controls, 64 Black or African American cases, 22,412 Black or African American controls	NA	7p22.2		rs883831-?	NR	7E-7		0.4775274	[0.29-0.67] unit increase	Illumina [9901720] (imputed)	N
607	chr7	2913735	2913736	rs2398571	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	7p22.2	GNA12	rs2398571-G	NR	4E-9		0.0167614	[0.011-0.022] unit increase	Affymetrix [321016] (imputed)	N
607	chr7	2915377	2915378	rs6977940	23218918	Sprooten E	2012-12-04	Psychiatry Res	White matter integrity as an intermediate phenotype: exploratory genome-wide association analysis in individuals at high risk of bipolar disorder.	White matter integrity	70 unaffected relatives of cases with bipolar disorder, 80 controls	NA	7p22.2	GNA12, CARD11	rs6977940-?	0.11	5E-6				Illumina [565404]	N
607	chr7	2919607	2919608	rs56097917	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	7p22.2	NR	rs56097917-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
607	chr7	2923034	2923035	rs112256160	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	7p22.2	NR	rs112256160-?	NR	4E-11				Affymetrix [~ 8270000] (imputed)	N
607	chr7	2924081	2924082	rs4557589	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Daytime sleep phenotypes	874 European ancestry individuals	NA	7p22.2	CARD11, GNA12, AMZ1, TTYH3	rs4557589-T	NR	5E-6	(daytime napping, weekdays)	0.5071	[0.29-0.73] unit increase	Affymetrix [7141204] (imputed)	N
607	chr7	2939339	2939340	rs4722214	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Neuroticism	170,911 European ancestry individuals	NA	7p22.2	NR	rs4722214-T	0.632	2E-6		0.017334059	[0.01-0.024] unit increase	Affymetrix [up to 6544775] (imputed)	N
607	chr7	2939351	2939352	rs112799045	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	7p22.2		rs112799045-?	NR	4E-8				NR [~ 8900000] (imputed)	N
607	chr7	2943133	2943134	rs7787896	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial triglycerides levels in very large HDL	4,348 individuals	NA	7p22.2		rs7787896-T	0.115645768	3E-8		0.217217	[0.14-0.29] mmol/l decrease	Illumina [7701709] (imputed)	N
607	chr7	2951411	2951412	rs12535623	29531279	Zhou S	2018-03-12	Sci Rep	Genome-wide association analysis identifies new candidate risk loci for familial intracranial aneurysm in the French-Canadian population.	Intracranial aneurysm	173 French Canadian cases, 1,772 French Canadian controls	2,617 cases, 1,416 controls	7p22.2	CARD11	rs12535623-?		1E-7	(French Canadians)	1.9262033		Illumina [7614484] (imputed)	N
607	chr7	2956266	2956267	rs6461701	30898391	Lawrenson K	2019-03-19	Gynecol Oncol	Genome-wide association studies identify susceptibility loci for epithelial ovarian cancer in east Asian women.	Epithelial ovarian cancer	3,238 East Asian ancestry cases, 4,083 East Asian ancestry controls	NA	7p22.2		rs6461701-?	NR	5E-6	(clearcell)	1.6		Illumina [11595112] (imputed)	N
607	chr7	2968194	2968195	rs117314280	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7p22.2	NR	rs117314280-A	0.02265	4E-9	(RMDN3)	0.01305	NR unit increase	Illumina [1671387] (imputed)	N
607	chr7	2970208	2970209	rs140448950	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7p22.2	NR	rs140448950-A	0.0122	2E-9	(MAP4)	0.0236	NR unit increase	Illumina [1671387] (imputed)	N
607	chr7	2990008	2990009	rs7806365	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7p22.2		rs7806365-?	NR	2E-8				NR [~ 8900000] (imputed)	N
607	chr7	3001955	3001956	rs6968032	31504550	Bradfield JP	2019-07-05	Hum Mol Genet	A Trans-ancestral Meta-Analysis of Genome-Wide Association Studies Reveals Loci Associated with Childhood Obesity.	Childhood obesity	8,613 European ancestry cases, 3,213 African American cases, 69 Moroccan ancestry cases, 986 Hispanic/Latino cases, 124 East Asian ancestry cases, 12,696 European ancestry controls, 1,392 African American controls, 64 Moroccan ancestry controls, 993 Hispanic/Latino controls, 454 East Asian ancestry controls	NA	7p22.2	NR	rs6968032-A	NR	4E-6	(African)	1.0259	[0.59-1.46] unit increase	Affymetrix, Illumina [up to 15123508] (imputed)	N
608	chr7	3027823	3027824	rs80277058	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7p22.2	NR	rs80277058-G	0.01045	3E-13	(DIABLO)	0.01869	NR unit increase	Illumina [1671387] (imputed)	N
608	chr7	3027823	3027824	rs80277058	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7p22.2	NR	rs80277058-G	0.01045	2E-9	(TGM2)	2.107	NR unit increase	Illumina [1671387] (imputed)	N
608	chr7	3062628	3062629	rs112119265	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (adrenergics, inhalants)	28,880 European ancestry cases, 147,565 European ancestry controls, 5,880 East Asian ancestry cases, 172,846 East Asian ancestry controls	NA	7p22.2		rs112119265-G	NR	4E-8		0.0936	[0.06-0.127] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
608	chr7	3062628	3062629	rs112119265	34103634	Valette K	2021-06-08	Commun Biol	Prioritization of candidate causal genes for asthma in susceptibility loci derived from UK Biobank.	Asthma	56,167 White-British ancestry cases, 352,255 White-British ancestry controls	NA	7p22.2	CARD11	rs112119265-G	0.0596894878336622	2E-8		0.0778066	[0.051-0.105] unit decrease	Affymetrix [35186738] (imputed)	N
608	chr7	3062628	3062629	rs112119265	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Respiratory diseases	approximately 459,000 European ancestry individuals	NA	7p22.2		rs112119265-?	NR	2E-8				NR [~ 8900000] (imputed)	N
608	chr7	3077057	3077058	rs12531349	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	7p22.2	NR	rs12531349-T	NR	3E-10		0.0171	[0.012-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
608	chr7	3077057	3077058	rs12531349	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	7p22.2	NR	rs12531349-T	NR	1E-13		0.0202	[0.015-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
608	chr7	3113033	3113034	rs1843938	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	7p22.2	CARD11	rs1843938-A	0.44	1E-10		1.08		Illumina [161311]	N
608	chr7	3116792	3116793	rs1843935	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	7p22.2		rs1843935-?	NR	9E-10				NR [~ 8900000] (imputed)	N
608	chr7	3125219	3125220	rs4722398	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	7p22.2	NR	rs4722398-?	NR	1E-10				Affymetrix [~ 8270000] (imputed)	N
608	chr7	3125219	3125220	rs4722398	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	7p22.2		rs4722398-?	NR	2E-10				NR [~ 8900000] (imputed)	N
608	chr7	3125219	3125220	rs4722398	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	7p22.2	NA	rs4722398-T	0.1461	4E-9		0.0147	[0.0098-0.0196] unit increase	NR [~ 27400000] (imputed)	N
608	chr7	3127689	3127690	rs113317835	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	7p22.2		rs113317835-?	NR	1E-23				NR [~ 8900000] (imputed)	N
608	chr7	3128788	3128789	rs4722404	23042114	Hirota T	2012-10-07	Nat Genet	Genome-wide association study identifies eight new susceptibility loci for atopic dermatitis in the Japanese population.	Atopic dermatitis	1,472 Japanese ancestry cases, 7,971 Japanese ancestry controls	1,856 Japanese ancestry cases, 7,021 Japanese ancestry controls	7p22.2	CARD11	rs4722404-G	0.326	8E-9		1.18	[1.12-1.25]	Illumina [606164]	N
608	chr7	3135735	3135736	rs76502292	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	7p22.2		rs76502292-T	0.184454	4E-11		0.021051329	[0.015-0.027] unit increase	Affymetrix [93095623] (imputed)	N
608	chr7	3139416	3139417	rs10951042	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	7p22.2	CARD11	rs10951042-C	NR	1E-18		1.1021	NR	Affymetrix, Illumina [8278136] (imputed)	N
608	chr7	3140172	3140173	rs6971710	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	7p22.2		rs6971710-A	0.201087	1E-11		0.02123992	[0.015-0.027] unit increase	Affymetrix [93095623] (imputed)	N
608	chr7	3140172	3140173	rs6971710	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p22.2	NR	rs6971710-A	0.187364	8E-28				Affymetrix, Illumina [19872809] (imputed)	N
608	chr7	3140172	3140173	rs6971710	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	7p22.2	NR	rs6971710-A	0.201035	3E-30		0.028325	[0.023-0.033] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
609	chr7	3149882	3149883	rs73033536	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	7p22.2	LOC105375130	rs73033536-T	0.91	6E-13				NR [> 9500000] (imputed)	N
609	chr7	3149882	3149883	rs73033536	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	7p22.2	NR	rs73033536-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
609	chr7	3153172	3153173	rs9986945	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	7p22.2	NR	rs9986945-G	0.883	2E-10		1.0612332	[1.04-1.08]	Affymetrix [15688218] (imputed)	N
609	chr7	3157275	3157276	rs73033560	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	7p22.2	LOC105375130	rs73033560-G	0.910805	7E-11		1.0712291	[1.04929794715679-1.09361851110627]	NR [9572556] (imputed)	N
609	chr7	3157701	3157702	rs6955702	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	7p22.2		rs6955702-G	NR	5E-22		0.0205	[0.016-0.025] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
609	chr7	3157701	3157702	rs6955702	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	7p22.2		rs6955702-G	0.524215	4E-21		0.021089269	[0.017-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
609	chr7	3157701	3157702	rs6955702	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	7p22.2		rs6955702-G	0.524204	8E-24		0.022525929	[0.018-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
609	chr7	3157701	3157702	rs6955702	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	7p22.2		rs6955702-G	0.524233	7E-13		0.017870737	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
609	chr7	3157701	3157702	rs6955702	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p22.2	NR	rs6955702-G	0.531041	6E-33				Affymetrix, Illumina [23472807] (imputed)	N
609	chr7	3157701	3157702	rs6955702	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	7p22.2	NR	rs6955702-G	0.522122	3E-31		0.022276	[0.019-0.026] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
609	chr7	3160510	3160511	rs6975452	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	7p22.2		rs6975452-A	NR	1E-20		0.0153	[0.012-0.018] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
609	chr7	3160510	3160511	rs6975452	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	7p22.2		rs6975452-A	0.489275	4E-10		0.015808538	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
609	chr7	3160510	3160511	rs6975452	30850646	Tziotzios C	2019-03-08	Nat Commun	Genome-wide association study in frontal fibrosing alopecia identifies four susceptibility loci including HLA-B*07:02.	Frontal fibrosing alopecia	1,016 European ancestry cases, 4,145 European ancestry controls		7p22.2	NR	rs6975452-T	0.504	2E-6		1.29	[1.16-1.43]	Illumina [~ 8000000] (imputed)	N
609	chr7	3169889	3169890	rs12532214	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	7p22.2	Intergenic	rs12532214-G	NR	2E-6		0.0209578	[0.012-0.03] unit increase	Illumina [13520550] (imputed)	N
609	chr7	3171019	3171020	rs13223928	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	7p22.2	intergenic	rs13223928-C	0.4988	5E-12		0.025075	[0.018-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
609	chr7	3171019	3171020	rs13223928	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	7p22.2	intergenic	rs13223928-C	0.4988	1E-9		0.0222581	[0.015-0.029] unit increase	Affymetrix [~ 2500000] (imputed)	N
609	chr7	3171019	3171020	rs13223928	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	7p22.2	intergenic	rs13223928-C	0.4988	9E-15		0.02809466	[0.021-0.035] unit decrease	Affymetrix [~ 2500000] (imputed)	N
609	chr7	3171019	3171020	rs13223928	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	7p22.2	intergenic	rs13223928-C	0.4988	4E-11		0.02401208	[0.017-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
609	chr7	3171019	3171020	rs13223928	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	7p22.2	intergenic	rs13223928-C	0.4988	4E-14		0.02746503	[0.02-0.035] unit decrease	Affymetrix [~ 2500000] (imputed)	N
609	chr7	3219762	3219763	rs79470577	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7p22.2	NR	rs79470577-G	0.01916	2E-8	(ACLY)	0.2553	NR unit increase	Illumina [1671387] (imputed)	N
609	chr7	3221647	3221648	rs115605431	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	7p22.2	Intergenic	rs115605431-T	0.999	2E-7	(AA)	0.417	unit increase	Illumina [NR] (imputed)	N
609	chr7	3224001	3224002	rs4719830	30319691	Liu C	2018-09-24	Front Genet	Genome-Wide Association and Mechanistic Studies Indicate That Immune Response Contributes to Alzheimer's Disease Development.	Cerebrospinal fluid AB1-42 levels	235 early mild cognitive impairment cases, 249 late mild cognitive impairment cases, 47 Alzheimer's disease cases, 281 controls.	NA	7p22.2	Intergenic	rs4719830-?		9E-6		121.7497	[NR] unit increase	Illumina [575353]	N
609	chr7	3258800	3258801	rs6461923	30319691	Liu C	2018-09-24	Front Genet	Genome-Wide Association and Mechanistic Studies Indicate That Immune Response Contributes to Alzheimer's Disease Development.	Cerebrospinal fluid AB1-42 levels	235 early mild cognitive impairment cases, 249 late mild cognitive impairment cases, 47 Alzheimer's disease cases, 281 controls.	NA	7p22.2	Intergenic	rs6461923-?		8E-6		122.9514	[NR] unit decrease	Illumina [575353]	N
610	chr7	3312869	3312870	rs2049477	30130595	Dominguez-Cruz MG	2018-08-18	Gene	Pilot genome-wide association study identifying novel risk loci for type 2 diabetes in a Maya population.	Type 2 diabetes	45 Maya ancestry cases, 47 Maya ancestry controls	NA	7p22.2	SDK1	rs2049477-?	0.7021	9E-7		5.714286		Affymetrix [757439]	N
610	chr7	3318657	3318658	rs10276303	28886342	Ng M	2017-09-07	Am J Hum Genet	A Genome-wide Association Study of Dupuytren Disease Reveals 17 Additional Variants Implicated in Fibrosis.	Dupuytren's disease	3,871 European ancestry cases, 4,686 European ancestry controls	4,041 European and unknown ancestry cases, 8,251 European and unknown ancestry controls	7p22.2	SDK1, CARD11	rs10276303-?	0.74	1E-15		1.2121212	[1.16-1.27]	Illumina [238825]	N
610	chr7	3323847	3323848	rs940780	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	7p22.2	NR	rs940780-T	0.3588	8E-10		1.039	[1.03-1.05]	Affymetrix, Illumina [NR] (imputed)	N
610	chr7	3329966	3329967	rs10259715	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	7p22.2	NR	rs10259715-A	0.209918	6E-9	(Conditioned on chr7:3503207)	0.018673949	[0.012-0.025] unit decrease	NR [~ 10000000] (imputed)	N
610	chr7	3344628	3344629	rs10807839	30617275	Erzurumluoglu AM	2019-01-07	Mol Psychiatry	Meta-analysis of up to 622,409 individuals identifies 40 novel smoking behaviour associated genetic loci.	Smoking initiation	324,851 European ancestry individuals, 21,962 South Asian ancestry individuals	up to 275,596 European ancestry individuals	7p22.2	SDK1	rs10807839-G	0.19	9E-11		0.0162	[0.01-0.022] unit increase (replication)	Affymetrix, Illumina [up to 1207583] (imputed)	N
610	chr7	3344985	3344986	rs1404872	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 5, width of mouth relative to central midface)	2,187 European ancestry individuals	NA	7p22.2	NR	rs1404872-A	0.08941	4E-7		0.2705	[0.17-0.37] unit decrease	Illumina [10677593] (imputed)	N
610	chr7	3359683	3359684	rs10951155	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	7p22.2	NA	rs10951155-G		3E-10		0.0115486	[0.008-0.0151] unit increase	Illumina [13288253] (imputed)	N
610	chr7	3359683	3359684	rs10951155	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	7p22.2	Intergenic	rs10951155-A	0.5404	1E-18	(MTAG)	0.0159	[0.012-0.019] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
610	chr7	3362641	3362642	rs4343996	25628336	Hromatka BS	2015-01-26	Hum Mol Genet	Genetic variants associated with motion sickness point to roles for inner ear development, neurological processes and glucose homeostasis.	Motion sickness	80,494 European ancestry individuals	NA	7p22.2	SDK1	rs4343996-G	0.451	9E-11		0.034	[0.023-0.044] unit increase	Illumina [7428049] (imputed)	N
610	chr7	3370037	3370038	rs4349886	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	7p22.2		rs4349886-C	0.462	2E-26		0.012	[0.01-0.014] unit decrease	NR [NR] (imputed)	N
610	chr7	3373739	3373740	rs4336505	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	7p22.2	Intergenic	rs4336505-A	0.4553	1E-11		0.0133	[0.0094-0.0172] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
610	chr7	3380894	3380895	rs4131987	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	7p22.2	Intergenic	rs4131987-T	0.5191	3E-14	(MTAG)	0.0174	[0.013-0.022] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
611	chr7	3424685	3424686	rs7785195	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	7p22.2	SDK1	rs7785195-G	0.340927	1E-10		0.014236	[0.01-0.0185] unit decrease	NR [16516521] (imputed)	N
611	chr7	3432942	3432943	rs7790430	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking initiation	842,717 European ancestry individuals	NA	7p22.2	SDK1	rs7790430-G		6E-9		1.021	[NR]	Affymetrix [up to 79000000] (imputed)	N
611	chr7	3446818	3446819	rs17133277	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 5, width of mouth relative to central midface)	2,187 European ancestry individuals	NA	7p22.2	NR	rs17133277-G	0.08895	3E-6		0.2476	[0.14-0.35] unit decrease	Illumina [10677593] (imputed)	N
611	chr7	3448972	3448973	rs2056475	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking initiation (ever regular vs never regular)	up to 433,216 European ancestry individuals	NA	7p22.2	SDK1	rs2056475-G	0.746	6E-11		0.0172	[0.012-0.022] unit decrease	Illumina [~ 250000] (imputed)	N
611	chr7	3455400	3455401	rs17133297	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	7p22.2		rs17133297-A	0.8958	2E-10		0.0146	[0.01-0.019] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
611	chr7	3472720	3472721	rs17133347	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	7p22.2	Intergenic	rs17133347-T	0.1046	2E-9	(MTAG)	0.0176	[0.012-0.023] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
611	chr7	3487413	3487414	rs10259354	31194737	Johnston KJA	2019-06-13	PLoS Genet	Genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	387,649 British ancestry individuals	NA	7p22.2	SDK1	rs10259354-G	0.2983	3E-8		0.0147	[0.0096-0.0198] unit increase	NR [NR]	N
611	chr7	3489138	3489139	rs13221852	27595289	Goyal RK	2016-09-05	Bone Marrow Transplant	Novel HLA-DP region susceptibility loci associated with severe acute GvHD.	Acute graft versus host disease in bone marrow transplantation (donor effect)	315 European ancestry donors (recipients with acute graft versus host disease), 341 European ancestry donors (recipients without graft versus host disease)	NA	7p22.2	SDK1	rs13221852-?		2E-8				Affymetrix [905761]	N
611	chr7	3496031	3496032	rs4719944	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	7p22.2	Intergenic	rs4719944-T	0.5489	4E-25	(MTAG)	0.0172	[0.014-0.021] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
611	chr7	3496031	3496032	rs4719944	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	7p22.2	Intergenic	rs4719944-T	0.5489	1E-13		0.0169	[0.012-0.021] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
611	chr7	3496031	3496032	rs4719944	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	7p22.2		rs4719944-T	0.5462	9E-18		0.0121	[0.0094-0.0148] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
611	chr7	3496031	3496032	rs4719944	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	7p22.2	Intergenic	rs4719944-T	0.5462	5E-23	(MTAG)	0.013	[0.01-0.016] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
611	chr7	3503206	3503207	rs13237637	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Smoking status (ever vs never smokers)	336,066 British ancestry individuals	NA	7p22.2	NR	rs13237637-G	0.5033	1E-8		1.0290183	NR	NR [8968716] (imputed)	N
611	chr7	3503206	3503207	rs13237637	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	7p22.2	SDK1	rs13237637-C	0.4965	6E-14		0.016295116	[0.012-0.021] unit decrease	Affymetrix [11514654] (imputed)	N
611	chr7	3503206	3503207	rs13237637	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	7p22.2	NR	rs13237637-C	0.485	1E-27		0.011771	[0.0097-0.0139] unit decrease	NR [9732723] (imputed)	N
611	chr7	3503206	3503207	rs13237637	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	7p22.2	NR	rs13237637-C	0.485	2E-20		0.023682335	[0.019-0.029] unit decrease	NR [~ 10000000] (imputed)	N
611	chr7	3503206	3503207	rs13237637	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	7p22.2	NR	rs13237637-C	0.476	8E-18		0.0125581	[0.0097-0.0154] unit increase	NR [9732723] (imputed)	N
611	chr7	3505091	3505092	rs1464534	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first birth	542,901 European ancestry individuals	NA	7p22.2	SDK1	rs1464534-C	0.2965	1E-9		0.0606	[0.041-0.08] unit decrease	NR [9744772] (imputed)	N
611	chr7	3520023	3520024	rs73671843	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	7p22.2	NR	rs73671843-G	0.8743	5E-10		1.0570824	[1.04-1.07]	Affymetrix, Illumina [NR] (imputed)	N
611	chr7	3521572	3521573	rs10242223	31527586	An J	2019-09-16	Nat Commun	Gastroesophageal reflux GWAS identifies risk loci that also associate with subsequent severe esophageal diseases.	Gastroesophageal reflux disease	80,265 European and unknown ancestry cases, 305,011 European and unknown ancestry controls	NA	7p22.2	SDK1, DL490859	rs10242223-A	NR	5E-9		1.0353091	[1.0234-1.0471]	Affymetrix, Illumina [up to 7600000] (imputed)	N
611	chr7	3537833	3537834	rs185387938	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	7p22.2	NR	rs185387938-?	NR	7E-8		2.8581	[1.26-4.45] unit decrease	Illumina [at least 560000] (imputed)	N
612	chr7	3556131	3556132	rs1108879	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	7p22.2	SDK1	rs1108879-A	0.5549	5E-10		0.012595687	[0.0086-0.0166] unit decrease	Affymetrix [11514654] (imputed)	N
612	chr7	3559825	3559826	rs2705608	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	7p22.2		rs2705608-?	NR	2E-11				NR [~ 8900000] (imputed)	N
612	chr7	3560400	3560401	rs1922018	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	7p22.2		rs1922018-C	0.364	3E-12		0.014	[0.01-0.018] unit increase	Affymetrix [up to 90000000] (imputed)	N
612	chr7	3602520	3602520	rs148148187	33830993	Johnston KJA	2021-04-08	PLoS Genet	Sex-stratified genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	387,649 British ancestry individuals	NA	7p22.2	SDK1	rs148148187-?	NR	1E-8			[NR]	NR [NR] (imputed)	N
612	chr7	3609820	3609821	rs10226719	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	7p22.2	SDK1	rs10226719-C	0.2116	1E-10		0.020252833	[0.014-0.026] unit decrease	Affymetrix [~ 11515000] (imputed)	N
612	chr7	3611607	3611608	rs9791502	33941792	Yoshimura K	2021-05-03	Sci Rep	A web-based survey on various symptoms of computer vision syndrome and the genetic understanding based on a multi-trait genome-wide association study.	Computer vision syndrome	1,966 Japanese ancestry individuals	NA	7p22.2	SDK1	rs9791502-?	NR	9E-7				Illumina [540916] (imputed)	N
612	chr7	3634710	3634711	rs10085617	30150663	Pasman JA	2018-08-27	Nat Neurosci	GWAS of lifetime cannabis use reveals new risk loci, genetic overlap with psychiatric traits, and a causal influence of schizophrenia.	Cannabis use	184,765 European ancestry individuals	NA	7p22.2	SDK1	rs10085617-A	0.416	3E-8		0.046	[0.03-0.062] unit increase	Affymetrix, Illumina [11733371] (imputed)	N
612	chr7	3643329	3643330	rs4257931	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	7p22.2	Intergenic	rs4257931-G	0.4723	4E-15		0.0153	[0.011-0.019] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
612	chr7	3661032	3661033	rs959894	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	7p22.2	Intergenic	rs959894-A	0.6198	2E-9	(MTAG)	0.0111	[0.0076-0.0146] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
613	chr7	3676001	3676002	rs6462203	31116379	Meier SM	2019-05-22	JAMA Psychiatry	Genetic Variants Associated With Anxiety and Stress-Related Disorders: A Genome-Wide Association Study and Mouse-Model Study.	Anxiety and stress-related disorders	12,655 European ancestry cases, 19,225 European ancestry controls	NA	7p22.2	SDK1	rs6462203-C	NR	1E-7		1.1098778	[1.07-1.15]	Illumina [8933939] (imputed)	N
613	chr7	3712191	3712192	rs1019914	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	7p22.2	Intergenic	rs1019914-A	0.5626	3E-12	(MTAG)	0.0116	[0.0083-0.0149] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
613	chr7	3733468	3733469	rs73672146	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	7p22.2		rs73672146-G	NR	5E-6		1.4108	[0.82-2] unit increase	Illumina [NR] (imputed)	N
613	chr7	3737406	3737407	rs73302247	29855537	Hirata T	2018-05-31	Sci Rep	Japanese GWAS identifies variants for bust-size, dysmenorrhea, and menstrual fever that are eQTLs for relevant protein-coding or long non-coding RNAs.	Pain medicine use during menstruation	1,813 Japanese ancestry female cases, 3,921 Japanese ancestry female controls	1,494 Japanese ancestry female cases, 4,120 Japanese ancestry female controls	7p22.2	NR	rs73302247-T	0.415273047	4E-6		0.13955176	[0.08-0.199] unit decrease	Affymetrix [536506]	N
613	chr7	3758929	3758930	rs113072763	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	7p22.2	NR	rs113072763-G	0.0212	9E-9		0.0273045	[0.018-0.037] unit decrease	NR [~ 9732723] (imputed)	N
614	chr7	3824140	3824141	rs12540241	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	7p22.2	NR	rs12540241-T	0.8074	2E-9		1.0471205	[1.03-1.06]	Affymetrix, Illumina [NR] (imputed)	N
614	chr7	3827899	3827900	rs55865143	29855537	Hirata T	2018-05-31	Sci Rep	Japanese GWAS identifies variants for bust-size, dysmenorrhea, and menstrual fever that are eQTLs for relevant protein-coding or long non-coding RNAs.	Menstruation quality of life impact (acne)	1,115 Japanese ancestry female cases, 4,619 Japanese ancestry female controls	1,204 Japanese ancestry female cases, 4,410 Japanese ancestry female controls	7p22.2	NR	rs55865143-G	0.161107421	7E-6		0.19965	[0.11-0.29] unit increase	Affymetrix [536506]	N
614	chr7	3893628	3893629	rs7806494	30850646	Tziotzios C	2019-03-08	Nat Commun	Genome-wide association study in frontal fibrosing alopecia identifies four susceptibility loci including HLA-B*07:02.	Frontal fibrosing alopecia	1,016 European ancestry cases, 4,145 European ancestry controls		7p22.2	NR	rs7806494-A	0.723	4E-6		1.34	[1.18-1.51]	Illumina [~ 8000000] (imputed)	N
614	chr7	3915563	3915564	rs6462411	19197348	Lowe JK	2009-02-06	PLoS Genet	Genome-wide association studies in an isolated founder population from the Pacific Island of Kosrae.	Quantitative traits	2,906 Kosraen individuals	NA	7p22.2	SDK1	rs6462411-C	0.20	1E-6	(TSH)	0.36	[NR] mIU/L decrease	Affymetrix [408775]	N
615	chr7	3948682	3948683	rs6962750	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	7p22.2	SDK1	rs6962750-T	0.7922	7E-9		0.013847006	[0.0092-0.0185] unit increase	Illumina [9339358] (imputed)	N
615	chr7	4025830	4025831	rs34977344	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Unilateral cleft lip and palate	205 Asian ancestry cases, 315 European ancestry cases, 692 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	7p22.2	NR	rs34977344-?	NR	8E-6		0.64	[0.61-0.68]	Illumina [539000] (imputed)	N
615	chr7	4026008	4026009	rs11978979	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Depression	at least 5,919 European ancestry cases, at least 130,691 European ancestry controls	634,037 European ancestry cases, 1,308,690 European ancestry controls	7p22.2	SDK1	rs11978979-A	0.2197	7E-12		0.017946111	[0.012-0.024] unit increase	NR [9417325] (imputed)	N
616	chr7	4118376	4118377	rs34912216	25628336	Hromatka BS	2015-01-26	Hum Mol Genet	Genetic variants associated with motion sickness point to roles for inner ear development, neurological processes and glucose homeostasis.	Motion sickness	80,494 European ancestry individuals	NA	7p22.2	SDK1	rs34912216-G	0.727	3E-8		0.035	[0.023-0.047] unit decrease	Illumina [7428049] (imputed)	N
616	chr7	4129322	4129323	rs78962708	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	7p22.2	NR	rs78962708-A	0.0326093806627321	5E-8		0.022453234	[0.014-0.031] unit increase	NR [NR]	N
616	chr7	4146615	4146616	rs56309858	31194736	Tiensuu H	2019-06-13	PLoS Genet	Risk of spontaneous preterm birth and fetal growth associates with fetal SLIT2.	Moderate-to-late spontaneous preterm birth	75 Finnish ancestry infant cases, 419 Finnish ancestry infant controls	NA	7p22.2	SDK1	rs56309858-?	NR	3E-6		2.2		Illumina [6778521] (imputed)	N
616	chr7	4148589	4148590	rs2342502	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	7p22.2	NR	rs2342502-G	0.461255062210136	3E-9		0.0067502125	[0.0045-0.009] unit increase	NR [NR]	N
616	chr7	4148589	4148590	rs2342502	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	7p22.2	NR	rs2342502-G	0.461255062210136	2E-9		0.008792868	[0.0059-0.0117] unit increase	NR [NR]	N
616	chr7	4148589	4148590	rs2342502	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	7p22.2	NR	rs2342502-G	0.461255062210136	8E-9		0.0071873073	[0.0047-0.0096] unit increase	NR [NR]	N
616	chr7	4148589	4148590	rs2342502	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	7p22.2	NR	rs2342502-G	0.461255062210136	2E-9		0.00561096	[0.0038-0.0074] unit increase	NR [NR]	N
616	chr7	4161792	4161793	rs8180800	31194736	Tiensuu H	2019-06-13	PLoS Genet	Risk of spontaneous preterm birth and fetal growth associates with fetal SLIT2.	Gestational age at birth (child effect)	666 Finnish ancestry infants	NA	7p22.2	SDK1	rs8180800-C	NR	2E-6		1.56	unit decrease	Illumina [6778521] (imputed)	N
616	chr7	4166658	4166659	rs654384	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Positive affect	180,281 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	7p22.2	NR	rs654384-A	0.4159	7E-6		0.0157	[0.0089-0.0225] unit increase	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
616	chr7	4167335	4167336	rs651245	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	7p22.2	NR	rs651245-C	0.601303885926065	1E-9		0.005713651	[0.0039-0.0076] unit increase	NR [NR]	N
616	chr7	4174388	4174389	rs4723416	30801121	O'Donnell S	2019-02-25	Inflamm Bowel Dis	The Unsolved Link of Genetic Markers and Crohn's Disease Progression: A North American Cohort Experience.	Crohn's disease (indolent vs progressive)	562 European ancestry individuals with indolent disease, 701 European ancestry individuals with progressive disease	NA	7p22.2	NR	rs4723416-G	0.419929	4E-6				Illumina [5378266] (imputed)	N
616	chr7	4176471	4176472	rs12701427	30289880	Qi G	2018-10-05	PLoS Genet	Heritability informed power optimization (HIPO) leads to enhanced detection of genetic associations across multiple traits.	Social science traits (pleiotropy) (HIPO component 1)	up to 630,791 European ancestry individuals	NA	7p22.2	SDK1	rs12701427-?	NR	1E-8				NR [2100000]	N
617	chr7	4228552	4228553	rs688020	28918882	Wattacheril J	2017-09-14	J Pediatr	Genome-Wide Associations Related to Hepatic Histology in Nonalcoholic Fatty Liver Disease in Hispanic Boys.	Liver fibrosis in pediatric non-alcoholic fatty acid liver disease	208 Hispanic boys	NA	7p22.2	SDK1	rs688020-C	0.2428	6E-6	(additive model)			Illumina [up to 624297]	N
617	chr7	4274443	4274444	rs117749317	31014085	Welsh P	2019-04-24	Circulation	Cardiac Troponin T and Troponin I in the General Population: Comparing and Contrasting their Genetic Determinants and Associations with Outcomes.	Cardiac Troponin-T levels	10,395 European ancestry individuals	NA	7p22.2	SDK1	rs117749317-A		5E-7		0.135	[NR] unit increase	Illumina [24111857] (imputed)	N
617	chr7	4304675	4304676	rs573200822	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	72,866 East Asian ancestry individuals	NA	7p22.2		rs573200822-T	4.83E-4	3E-8		0.608219	[0.39-0.82] unit decrease	Illumina [13461863] (imputed)	N
617	chr7	4304675	4304676	rs573200822	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	7p22.2		rs573200822-T	NR	3E-8		0.6082	[0.39-0.82] unit decrease	Affymetrix, Illumina [20521447] (imputed)	N
618	chr7	4394413	4394414	rs141508053	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	7p22.2	SDK1	rs141508053-G	0.0106439272424583	7E-6	(G_unclassified_P_Proteobacteria_RNT)	0.845351	[0.48-1.21] unit decrease	Illumina [7711310] (imputed)	N
618	chr7	4401549	4401550	rs11760485	26087016	Pappa I	2015-06-18	Am J Med Genet B Neuropsychiatr Genet	A genome-wide approach to children's aggressive behavior: The EAGLE consortium.	Early childhood aggressive behavior	15,668 European ancestry individuals	NA	7p22.2	SDK1	rs11760485-T	0.33	1E-6				Affymetrix, Illumina [up to 3856236] (imputed)	N
618	chr7	4411208	4411209	rs10488360	17903294	Yang Q	2007-09-19	BMC Med Genet	Genome-wide association and linkage analyses of hemostatic factors and hematological phenotypes in the Framingham Heart Study.	Factor VII	886 European ancestry individuals	NA	7p22.2	intergenic	rs10488360-?	0.30	7E-6				Affymetrix [70897]	N
619	chr7	4456570	4456571	rs78388460	32489964	Cresci S	2020-01-03	J Lipid Atheroscler	Genetic Architecture of Circulating Very-Long-Chain (C24:0 and C22:0) Ceramide Concentrations.	Ceramide levels (C24:0)	2,217 European ancestry individuals	NA	7p22.2	SDK1	rs78388460-?	NR	1E-6	(conditioned on rs168622)	0.159	[0.094-0.224] unit decrease	Affymetrix [9346801] (imputed)	N
619	chr7	4457402	4457403	rs191288953	32489964	Cresci S	2020-01-03	J Lipid Atheroscler	Genetic Architecture of Circulating Very-Long-Chain (C24:0 and C22:0) Ceramide Concentrations.	Ceramide levels (C22:0)	2,217 European ancestry individuals	NA	7p22.2	SDK1	rs191288953-?	NR	7E-8	(conditioned on rs4814175)	0.049	[0.031-0.067] unit decrease	Affymetrix [9346801] (imputed)	N
619	chr7	4467478	4467479	rs6975373	28632202	Witt SH	2017-06-20	Transl Psychiatry	Genome-wide association study of borderline personality disorder reveals genetic overlap with bipolar disorder, major depression and schizophrenia.	Borderline personality disorder	998 European ancestry cases, 1,545 European ancestry controls	NA	7p22.2	intergenic	rs6975373-T	0.0793	6E-6		1.7113	[1.48-1.94]	Illumina [10736316] (imputed)	N
619	chr7	4474131	4474132	rs314590	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	7p22.2	SDK1	rs314590-G	0.271	4E-6	(Vitamin B12 )	0.02	[NR] pmol/L increase	Illumina [899892]	N
619	chr7	4498946	4498947	rs55869773	29346644	Yan Q	2018-01-15	Hum Mol Genet	Genome-wide Analysis of Disease Progression in Age-related Macular Degeneration.	Disease progression in age-related macular degeneration	1,105 progressed eyes and 3,912 non-progressed eyes from 2,721 European ancestry individuals	NA	7p22.2	SDK1, FOXK1	rs55869773-A	0.07	4E-6		1.92		Illumina [8974355] (imputed)	N
619	chr7	4500795	4500796	rs73311026	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Skin reflectance (Melanin index)	720 South Asian ancestry individuals		7p22.2	NR	rs73311026-A	NR	8E-6	(conditioned on rs1426654)	0.476507	[0.27-0.69] unit decrease	Affymetrix, Illumina [at least 398118] (imputed)	N
619	chr7	4509588	4509589	rs141480664	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	7p22.2	SDK1, FOXK1	rs141480664-G	0.01	6E-7	(EA)	0.4039	[0.25-0.56] unit increase	Illumina [~ 9000000] (imputed)	N
619	chr7	4509588	4509589	rs141480664	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	7p22.2	SDK1, FOXK1	rs141480664-G	0.01	1E-6		0.3879	[0.23-0.54] unit increase	Illumina [~ 9000000] (imputed)	N
620	chr7	4588631	4588632	rs11766034	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	7p22.1	NR	rs11766034-?	NR	8E-6		16.992	NR unit increase	Affymetrix [at least 600000] (imputed)	N
620	chr7	4618620	4618621	rs78030731	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7p22.1	NR	rs78030731-A	0.03136	1E-9	(APOB)	0.4936	NR unit increase	Illumina [1671387] (imputed)	N
620	chr7	4657495	4657496	rs7798985	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin I concentration	1,606 African American individuals	NA	7p22.1		rs7798985-?	NR	1E-5		0.31	[0.17-0.45] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
620	chr7	4669948	4669949	rs73049928	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	7p22.1	FOXK1	rs73049928-A	0.8072	2E-9		0.1167	[0.078-0.155] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
620	chr7	4681455	4681456	rs76400633	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	7p22.1	intergenic	rs76400633-T	0.7831	6E-11		0.0151	[0.011-0.02] unit increase	Affymetrix [18391927] (imputed)	N
620	chr7	4683257	4683258	rs62450857	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	7p22.1	NR	rs62450857-G	0.8671	2E-8		0.0388	[0.025-0.052] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
620	chr7	4683571	4683572	rs62452060	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	7p22.1	NR	rs62452060-G	0.8638	2E-9		0.0354	[0.024-0.047] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
620	chr7	4683571	4683572	rs62452060	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	7p22.1		rs62452060-?	NR	1E-8				NR [~ 8900000] (imputed)	N
620	chr7	4695843	4695844	rs11981566	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	7p22.1		rs11981566-G	NR	2E-10		0.0137	[0.0096-0.0178] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
620	chr7	4708133	4708134	rs17828856	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	7p22.1	NR	rs17828856-A	0.13	6E-10		0.0171	[0.012-0.023] unit decrease	NR [NR]	N
620	chr7	4710676	4710677	rs12673062	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	7p22.1	FOXK1	rs12673062-G	0.78421	1E-9		0.0135507	[0.0092-0.0179] unit decrease	NR [13737936] (imputed)	N
621	chr7	4723533	4723534	rs9791644	24023788	Ong BA	2013-09-02	PLoS One	Gene network analysis in a pediatric cohort identifies novel lung function genes.	Lung function (FVC)	1,015 European ancestry individuals, 541 African American individuals	NA	7p22.1	NR	rs9791644-?		3E-6	(AA)			Illumina [up to 524000]	N
621	chr7	4769029	4769030	rs7793919	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	7p22.1	FOXK1	rs7793919-T	0.435	9E-9		0.0312341	[0.021-0.042] unit increase	Illumina [13520550] (imputed)	N
621	chr7	4776546	4776547	rs10261971	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	7p22.1	FOXK1	rs10261971-G	0.539	1E-8		0.0217061	[0.014-0.029] unit increase	Illumina [13520550] (imputed)	N
621	chr7	4779604	4779605	rs140285788	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,963 Sub-Saharan African ancestry females	NA	7p22.1		rs140285788-A	0.983718	3E-7		0.0561794	[0.035-0.078] unit increase	Illumina [13900000] (imputed)	N
621	chr7	4780513	4780514	rs3087749	31085060	Gisbert L	2019-05-10	Eur Neuropsychopharmacol	Genome-wide analysis of emotional lability in adult attention deficit hyperactivity disorder (ADHD).	Emotional lability in attention deficit hyperactivity disorder	563 European ancestry individuals	NA	7p22.1	FOXK1	rs3087749-?	NR	8E-6		1.6393442	[1.32-2]	Illumina [2777520] (imputed)	N
621	chr7	4784651	4784652	rs7784748	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	7p22.1	FOXK1	rs7784748-T	0.428338	2E-8		0.0111733	[0.0073-0.0151] unit decrease	Affymetrix [NR] (imputed)	N
621	chr7	4785128	4785129	rs10277273	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	7p22.1		rs10277273-?	NR	3E-9				NR [~ 8900000] (imputed)	N
621	chr7	4827514	4827514	rs528161076	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental extreme longevity (95 years and older)	1,339 middle-aged British cases, 40,934 middle-aged British controls	NA	7p22.1	AP5Z1	rs528161076-?	NR	3E-8		0.01577	[0.01-0.021] unit decrease	Affymetrix [9658292] (imputed)	N
621	chr7	4832197	4832198	rs11971803	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	7p22.1	NR	rs11971803-?	NR	9E-6	(AA)	5.57	[4.53-6.61]	Illumina [905956]	N
621	chr7	4839264	4839265	rs2306921	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	7p22.1	RADIL	rs2306921-A	0.06	6E-6	(MCP1 )	0.04	[NR] pg/mL increase	Illumina [899892]	N
622	chr7	4862873	4862874	rs62450186	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	7p22.1	RADIL	rs62450186-C	0.010996432251041	4E-7	(G_unclassified_P_Firmicutes_HB)	1.53882	[0.94-2.13] unit decrease	Illumina [7711310] (imputed)	N
622	chr7	4889964	4889965	rs10464373	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7p22.1	RADIL, PAPOLB	rs10464373-T	0.719872	4E-8	(-28 ms)	0.0346541	[0.022-0.047] unit decrease	Affymetrix [10000000] (imputed)	N
622	chr7	4905054	4905055	rs10235512	31201950	Lutz MW	2019-03-06	Neurobiol Aging	Analysis of pleiotropic genetic effects on cognitive impairment, systemic inflammation, and plasma lipids in the Health and Retirement Study.	C-reactive protein levels	6,545 European ancestry individuals	NA	7p22.1		rs10235512-T	0.09	1E-7		1.64	[1.20-2.62] unit decrease	Illumina [19468843] (imputed)	N
623	chr7	4998025	4998026	rs11768053	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	7p22.1	NR	rs11768053-?	NR	2E-8				Illumina [7760689] (imputed)	N
623	chr7	5078359	5078360	rs6463230	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Ischemic stroke (cardioembolic)	174 Indian ancestry cases, 2,154 Indian ancestry controls	NA	7p22.1		rs6463230-?	NR	3E-6		1.0688845	[1.03944319668408-1.09915964462125]	Illumina [up to 7827597] (imputed)	N
624	chr7	5133935	5133936	rs12667108	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal cancer	978 Austrian ancestry cases, 4,294 European ancestry controls	NA	7p22.1	Intergenic	rs12667108-?		6E-6		1.459641	[NR]	Affymetrix [492217] (imputed)	N
624	chr7	5150580	5150581	rs7798496	33321125	Nasu T	2020-12-13	Int J Cardiol	A genome-wide association study for highly sensitive cardiac troponin T levels identified a novel genetic variation near a RBAK-ZNF890P locus in the Japanese general population.	HIgh-sensitivity cardiac troponin T levels (high vs low)	967 Japanese ancestry high hs-cTnT individuals, 2,816 Japanese ancestry low hs-cTnT individuals	190 Japanese ancestry high hs-cTnT individuals, 708 Japanese ancestry low hs-cTnT individuals	7p22.1	RBAK-ZNF890P	rs7798496-T	0.271	3E-8		0.052	[0.034-0.07] unit increase	Illumina [7151284] (imputed)	N
624	chr7	5151493	5151494	rs117172593	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7p22.1	NR	rs117172593-G	0.02091	7E-10	(PREP)	0.03381	NR unit increase	Illumina [1671387] (imputed)	N
624	chr7	5231627	5231628	rs6463311	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	7p22.1	WIPI2	rs6463311-A	0.885852	3E-19		0.031094115	[0.024-0.038] unit increase	Affymetrix [93095623] (imputed)	N
624	chr7	5231627	5231628	rs6463311	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p22.1	NR	rs6463311-A	0.892648	4E-19				Affymetrix, Illumina [24332387] (imputed)	N
624	chr7	5231627	5231628	rs6463311	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	7p22.1		rs6463311-?	NR	4E-19				NR [~ 8900000] (imputed)	N
624	chr7	5234361	5234362	rs7777063	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	7p22.1		rs7777063-T	NR	2E-29		0.0386	[0.032-0.045] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
624	chr7	5234361	5234362	rs7777063	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	7p22.1		rs7777063-T	NR	9E-11		0.0223	[0.016-0.029] unit decrease	Affymetrix, Illumina [20536605] (imputed)	N
624	chr7	5234361	5234362	rs7777063	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	7p22.1		rs7777063-T	NR	2E-41		0.0462	[0.04-0.053] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
624	chr7	5234361	5234362	rs7777063	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	7p22.1	WIPI2	rs7777063-T	0.888708	2E-40		0.0471233	[0.041-0.054] unit decrease	Affymetrix [93095623] (imputed)	N
624	chr7	5234361	5234362	rs7777063	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	7p22.1	WIPI2	rs7777063-G	0.888741	4E-17		0.0319681	[0.025-0.039] unit decrease	Affymetrix [93095623] (imputed)	N
624	chr7	5234361	5234362	rs7777063	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	7p22.1	WIPI2	rs7777063-T	0.888697	1E-52		0.05381968	[0.047-0.061] unit decrease	Affymetrix [93095623] (imputed)	N
624	chr7	5234361	5234362	rs7777063	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	7p22.1		rs7777063-?	NR	3E-58				NR [~ 8900000] (imputed)	N
624	chr7	5234661	5234662	rs11771301	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	7p22.1	NR	rs11771301-T	0.888083	2E-21		0.030398	[0.024-0.037] SD unit decrease	Affymetrix, Illumina [50282193] (imputed)	N
624	chr7	5234661	5234662	rs11771301	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	7p22.1	NR	rs11771301-T	0.888024	2E-71		0.054843	[0.049-0.061] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
624	chr7	5234661	5234662	rs11771301	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	7p22.1	WIPI2	rs11771301-T	0.8895	1E-13		0.04172782	[0.031-0.053] unit decrease	Affymetrix [~ 2500000] (imputed)	N
624	chr7	5234661	5234662	rs11771301	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	7p22.1	WIPI2	rs11771301-T	0.8896	2E-12		0.03978554	[0.029-0.051] unit increase	Affymetrix [~ 2500000] (imputed)	N
624	chr7	5234964	5234965	rs4724452	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	7p22.1	WIPI2	rs4724452-T	0.888789	2E-33		0.04317573	[0.036-0.05] unit increase	Affymetrix [93095623] (imputed)	N
624	chr7	5234964	5234965	rs4724452	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p22.1	NR	rs4724452-T	0.892328	1E-62				Affymetrix, Illumina [24246363] (imputed)	N
624	chr7	5234964	5234965	rs4724452	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	7p22.1	NR	rs4724452-T	0.886717	4E-59		0.046878	[0.041-0.053] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
624	chr7	5234964	5234965	rs4724452	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p22.1	NR	rs4724452-T	0.894379	9E-20				Affymetrix, Illumina [21126107] (imputed)	N
624	chr7	5234964	5234965	rs4724452	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p22.1	NR	rs4724452-T	0.894088	5E-74				Affymetrix, Illumina [20825802] (imputed)	N
625	chr7	5252273	5252274	rs4720530	29518117	Lee HS	2018-03-08	PLoS One	Nuclear receptor and VEGF pathways for gene-blood lead interactions, on bone mineral density, in Korean smokers.	Bone mineral density x blood lead interaction in current smokers (2df test)	119 Korean ancestry current smokers	NA	7p22.1	WIPI2	rs4720530-?		2E-6				Affymetrix [344396]	N
625	chr7	5252273	5252274	rs4720530	29518117	Lee HS	2018-03-08	PLoS One	Nuclear receptor and VEGF pathways for gene-blood lead interactions, on bone mineral density, in Korean smokers.	Bone mineral density x blood lead interaction in current smokers (1df test)	119 Korean ancestry current smokers	NA	7p22.1	WIPI2	rs4720530-?		4E-7				Affymetrix [344396]	N
625	chr7	5268515	5268516	rs11761408	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	7p22.1	WIPI2	rs11761408-A	0.7493	2E-9		0.02461907	[0.017-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
625	chr7	5269423	5269424	rs7785898	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	7p22.1		rs7785898-C	NR	2E-13		0.0214	[0.016-0.027] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
625	chr7	5269423	5269424	rs7785898	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	7p22.1	WIPI2	rs7785898-C	0.879081	5E-13		0.02483012	[0.018-0.032] unit increase	Affymetrix [93095623] (imputed)	N
625	chr7	5269423	5269424	rs7785898	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	7p22.1	NR	rs7785898-C	0.879952	2E-21		0.027511	[0.022-0.033] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
625	chr7	5336104	5336105	rs11765038	28322283	Chibnik LB	2017-03-21	Mol Psychiatry	Susceptibility to neurofibrillary tangles: role of the PTPRD locus and limited pleiotropy with other neuropathologies.	Neuropathologic traits (pleiotropy)	909 European ancestry individuals	369 individuals	7p22.1	NR	rs11765038-A	0.32	4E-6	(EA)			Affymetrix, Illumina [NR] (imputed)	N
625	chr7	5342412	5342413	rs11979775	32126890	Ter Hark SE	2020-03-04	J Psychopharmacol	A new genetic locus for antipsychotic-induced weight gain: A genome-wide study of first-episode psychosis patients using amisulpride (from the OPTiMiSE cohort).	Weight gain in amisulpride-treated first-episode psychosis	184 European ancestry individuals, 9 African ancestry individuals, 6 Hispanic/Latin American individuals, 3 South Asian ancestry individuals, 2 East Asian ancestry individuals, 2 individuals	NA	7p22.1	NR	rs11979775-C	NR	5E-6		0.5007	NR unit increase	Illumina [4533042] (imputed)	N
625	chr7	5345349	5345350	rs13230004	32126890	Ter Hark SE	2020-03-04	J Psychopharmacol	A new genetic locus for antipsychotic-induced weight gain: A genome-wide study of first-episode psychosis patients using amisulpride (from the OPTiMiSE cohort).	Weight gain in amisulpride-treated first-episode psychosis	184 European ancestry individuals, 9 African ancestry individuals, 6 Hispanic/Latin American individuals, 3 South Asian ancestry individuals, 2 East Asian ancestry individuals, 2 individuals	NA	7p22.1	SLC29A4	rs13230004-A	0.2724	4E-6		0.5336	NR unit increase	Illumina [4533042] (imputed)	N
625	chr7	5353759	5353760	rs146427679	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	7p22.1		rs146427679-G	NR	7E-15		0.0201	[0.015-0.025] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
625	chr7	5355018	5355019	rs112915601	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7p22.1		rs112915601-?	NR	2E-21				NR [~ 8900000] (imputed)	N
625	chr7	5373369	5373370	rs4486099	34834585	Zazuli Z	2021-11-20	J Pers Med	Association between Genetic Variants and Cisplatin-Induced Nephrotoxicity: A Genome-Wide Approach and Validation Study.	Cisplatin-induced nephrotoxicity (increased serum creatinine AKI-CTCAE)	608 European ancestry individuals	NA	7p22.1		rs4486099-A	NR	4E-6		2.9	[1.9-4.6]	Illumina [6500000] (imputed)	N
626	chr7	5375072	5375073	rs113599846	34330890	Ip HF	2021-07-30	Transl Psychiatry	Genetic association study of childhood aggression across raters, instruments, and age.	Childhood aggressive behavior	87,485 European ancestry individuals	NA	7p22.1		rs113599846-C	0.039372898	4E-7		0.054439366	[0.033-0.076] unit decrease	Affymetrix, Illumina [up to 7284995] (imputed)	N
626	chr7	5403212	5403213	rs6463427	29203360	Sanders MGH	2017-12-02	J Invest Dermatol	The genetics of seborrheic dermatitis: a candidate gene approach and pilot genome-wide association study.	Seborrheic dermatitis	609 European and unknown ancestry cases, 3441 European and unknown ancestry controls	NA	7p22.1	GRM3	rs6463427-?	NR	2E-6				Illumina [9008729] (imputed)	N
626	chr7	5436752	5436753	rs748670681	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Uveitis	2,616 European ancestry cases, 478,126 European ancestry controls, 125 East Asian ancestry cases, 174,600 East Asian ancestry controls	NA	7p22.1		rs748670681-T	NR	5E-15		0.7144	[0.54-0.89] unit increase	Affymetrix, Illumina [25844095] (imputed)	N
626	chr7	5436752	5436753	rs748670681	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Ulcerative colitis	5,371 European ancestry cases, 412,561 European ancestry controls, 314 East Asian ancestry cases, 178,375 East Asian ancestry controls	NA	7p22.1		rs748670681-T	NR	2E-16		0.7329	[0.56-0.91] unit increase	Affymetrix, Illumina [25840981] (imputed)	N
626	chr7	5436752	5436753	rs748670681	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Iritis	2,616 European ancestry cases, 478,126 European ancestry controls, 110 East Asian ancestry cases, 175,543 East Asian ancestry controls	NA	7p22.1		rs748670681-T	NR	5E-15		0.7144	[0.54-0.89] unit increase	Affymetrix, Illumina [25844196] (imputed)	N
626	chr7	5453536	5453537	rs71531304	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Age at menopause	approximately 143,000 European ancestry individuals	NA	7p22.1		rs71531304-?	NR	1E-10				NR [~ 8900000] (imputed)	N
626	chr7	5475472	5475473	rs6957201	29748315	Pott J	2018-05-01	Circ Genom Precis Med	Genetic Regulation of PCSK9 (Proprotein Convertase Subtilisin/Kexin Type 9) Plasma Levels and Its Impact on Atherosclerotic Vascular Disease Phenotypes.	Plasma proprotein convertase subtilisin/kexin type 9 levels in stable coronary artery disease	2,022 European ancestry individuals without statin treatment, 1,268 European ancestry individuals with statin treatment	NR	7p22.1	FBXL18, TNRC18	rs6957201-C	0.971	7E-9		0.163	[0.11-0.22] unit decrease	Affymetrix [9882017] (imputed)	N
626	chr7	5475472	5475473	rs6957201	29748315	Pott J	2018-05-01	Circ Genom Precis Med	Genetic Regulation of PCSK9 (Proprotein Convertase Subtilisin/Kexin Type 9) Plasma Levels and Its Impact on Atherosclerotic Vascular Disease Phenotypes.	Plasma proprotein convertase subtilisin/kexin type 9 levels in stable coronary artery disease	2,022 European ancestry individuals without statin treatment, 1,268 European ancestry individuals with statin treatment	NR	7p22.1	FBXL18, TNRC18	rs6957201-C	0.97	2E-6	(statin-free)	0.167	[NR] unit decrease	Affymetrix [9882017] (imputed)	N
626	chr7	5495683	5495684	rs66483545	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	334,468 European ancestry, NR ancestry individuals	NA	7p22.1		rs66483545-?	NR	5E-8				Affymetrix [NR] (imputed)	N
626	chr7	5495683	5495684	rs66483545	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	7p22.1		rs66483545-G	0.842	2E-9				Affymetrix [10369434] (imputed)	N
626	chr7	5495683	5495684	rs66483545	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	7p22.1	FBXL18	rs66483545-A	0.157809	4E-13		0.02203393	[0.016-0.028] unit increase	Affymetrix [93095623] (imputed)	N
627	chr7	5524804	5524805	rs10216189	24068947	Brandler WM	2013-09-12	PLoS Genet	Common variants in left/right asymmetry genes and pathways are associated with relative hand skill.	Relative hand skill in reading disability	728 European ancestry individuals with reading disability	NA	7p22.1	FBXL18, TNRC18, ACTB, MIR589	rs10216189-?	0.39	4E-6		0.24	[0.14-0.34] unit decrease	Illumina [2095209]	N
627	chr7	5527169	5527170	rs4623326	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p22.1	NR	rs4623326-C	0.100505	1E-10				Affymetrix, Illumina [17210439] (imputed)	N
627	chr7	5529084	5529085	rs4724702	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	7p22.1	FBXL18	rs4724702-G	0.894804	1E-9		0.022331752	[0.015-0.03] unit increase	Affymetrix [93095623] (imputed)	N
627	chr7	5530826	5530827	rs3801057	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	7p22.1	Intergenic	rs3801057-G	0.5002	5E-8		0.0107	[0.007-0.0144] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
627	chr7	5530842	5530843	rs6463483	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	7p22.1	NR	rs6463483-?	NR	8E-40				Affymetrix [NR]	N
627	chr7	5533318	5533319	rs62441014	26420894	Wuttke M	2015-09-28	Nephrol Dial Transplant	Genetic loci associated with renal function measures and chronic kidney disease in children: the Pediatric Investigation for Genetic Factors Linked with Renal Progression Consortium.	Glomerular filtration rate in chronic kidney disease	up to 744 Central European ancestry child cases, up to 397 Turkish ancestry child cases	NA	7p22.1	FBXL18	rs62441014-C	0.41	4E-6		0.07	[0.031-0.109] unit increase	Illumina [~ 8300000] (imputed)	N
627	chr7	5533564	5533565	rs6463485	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	7p22.1	NR	rs6463485-C	0.095345	5E-13		0.023597	[0.017-0.03] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
627	chr7	5542512	5542513	rs6463489	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	7p22.1	NA	rs6463489-T	0.0959	3E-10		0.0167	[0.012-0.022] unit increase	NR [~ 27400000] (imputed)	N
627	chr7	5543364	5543365	rs6463490	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	7p22.1	NR	rs6463490-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
627	chr7	5546095	5546096	rs2966440	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	7p22.1		rs2966440-?	NR	1E-9				NR [~ 8900000] (imputed)	N
627	chr7	5550937	5550938	rs10268683	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	7p22.1	Intergenic	rs10268683-A	0.5578	9E-9	(MTAG)	0.0096	[0.0063-0.0129] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
627	chr7	5551922	5551923	rs9771075	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	7p22.1	FBXL18	rs9771075-C	0.435991	8E-12		0.015489139	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
627	chr7	5561117	5561118	rs852434	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p22.1	NR	rs852434-G	0.407118	6E-11				Affymetrix, Illumina [23472807] (imputed)	N
627	chr7	5561880	5561880	rs531282607	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	7p22.1	ACTB	rs531282607-CA	0.303101	1E-9		0.014941899	[0.01-0.02] unit increase	Affymetrix [93095623] (imputed)	N
627	chr7	5566670	5566671	rs852425	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	7p22.1	NR	rs852425-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
627	chr7	5569326	5569327	rs2908425	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	7p22.1	NR	rs2908425-A	0.332187	4E-12		0.014205	[0.01-0.018] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
627	chr7	5569326	5569327	rs2908425	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	7p22.1	Intergenic	rs2908425-A	0.3358	3E-9	(MTAG)	0.0113	[0.0076-0.015] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
627	chr7	5569714	5569715	rs2966450	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	7p22.1	ACTB	rs2966450-A	0.332829	3E-12		0.016352693	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
627	chr7	5569714	5569715	rs2966450	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	7p22.1		rs2966450-?	NR	2E-9				NR [~ 8900000] (imputed)	N
627	chr7	5570100	5570122	rs13447390	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	7p22.1	ACTB	rs13447390-G	0.333668	3E-9		0.014452579	[0.0097-0.0192] unit increase	Affymetrix [93095623] (imputed)	N
627	chr7	5571986	5571986	rs2308253	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	7p22.1	ACTB	rs2308253-CGCTACA	0.392925	1E-12		0.016283313	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
627	chr7	5572131	5572132	rs852392	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	7p22.1		rs852392-A	NR	1E-8		0.0151	[0.0098-0.0204] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
627	chr7	5573556	5573557	rs852390	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	7p22.1	ACTB	rs852390-G	0.382765	1E-10		0.014922168	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
627	chr7	5574238	5574239	rs852388	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	7p22.1	ACTB	rs852388-G	0.788722	9E-10		0.0150872	[0.01-0.02] unit decrease	Affymetrix [NR] (imputed)	N
627	chr7	5579707	5579707	rs201470250	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	7p22.1	ACTB	rs201470250-CA	0.275512	4E-12		0.0190336	[0.014-0.024] unit increase	Affymetrix [93095623] (imputed)	N
627	chr7	5583044	5583045	rs2098226	29622589	Tereshchenko LG	2018-04-05	J Am Heart Assoc	Genome-Wide Associations of Global Electrical Heterogeneity ECG Phenotype: The ARIC (Atherosclerosis Risk in Communities) Study and CHS (Cardiovascular Health Study).	Global electrical heterogeneity phenotypes	3,057 Black individuals, 10,769 European ancestry individuals	NA	7p22.1	ACTB	rs2098226-A	0.74	8E-9	(SAI QRST)	0.07	[0.045-0.095] unit increase	Affymetrix, Illumina [at least 9117794] (imputed)	N
627	chr7	5619730	5619731	rs34276468	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	7p22.1		rs34276468-?	NR	5E-10				NR [~ 8900000] (imputed)	N
627	chr7	5619873	5619874	rs60930629	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	7p22.1		rs60930629-A	NR	3E-8		0.0141	[0.009-0.0192] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
627	chr7	5626316	5626317	rs79165759	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	7p22.1	NR	rs79165759-?	NR	2E-6		4.8	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
629	chr7	5769488	5769489	rs13239194	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	7p22.1	NR	rs13239194-?	NR	8E-6		4.478	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
629	chr7	5778501	5778502	rs149828912	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		RNF216	rs149828912-?	NR	3E-9	(female)	0.466632	[NR] unit increase	Affymetrix [NR] (imputed)	N
629	chr7	5794043	5794044	rs6958272	33987465	Alfradique-Dunham I	2021-01-28	Neurol Genet	Genome-Wide Association Study Meta-Analysis for Parkinson Disease Motor Subtypes.	Parkinson's disease motor subtype (tremor to postural instability/gait difficulty score ratio)	3,212 European ancestry individuals	NA	7p22.1	RNF216	rs6958272-T	0.92	3E-6		0.22	[0.12-0.32] unit decrease	Illumina [14638245] (imputed)	N
629	chr7	5807958	5807959	rs7782328	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	7p22.1	Intergenic	rs7782328-A	0.2384	9E-10	(MTAG)	0.0165	[0.011-0.022] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
629	chr7	5824099	5824100	rs35745455	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	7p22.1	Intergenic	rs35745455-A	0.5039	7E-10	(MTAG)	0.0111	[0.0076-0.0146] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
629	chr7	5824099	5824100	rs35745455	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	7p22.1	Intergenic	rs35745455-A	0.5036	5E-12	(MTAG)	0.0115	[0.0082-0.0148] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
629	chr7	5824099	5824100	rs35745455	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	7p22.1		rs35745455-A	0.501	1E-8		0.008	[0.0053-0.0107] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
629	chr7	5824099	5824100	rs35745455	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	7p22.1	Intergenic	rs35745455-A	0.501	1E-10	(MTAG)	0.0084	[0.0059-0.0109] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
629	chr7	5834273	5834274	rs4720652	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p22.1	NR	rs4720652-T	0.0780827	2E-12				Affymetrix, Illumina [23467995] (imputed)	N
629	chr7	5842841	5842842	rs61497549	31533690	Orlova E	2019-09-18	BMC Oral Health	Pilot GWAS of caries in African-Americans shows genetic heterogeneity.	Dental caries (decayed and filled deciduous teeth)	96 African American children	NA	7p22.1	MIR6874	rs61497549-?		3E-6		2.343	[1.46-3.22] unit increase	Illumina [~ 4900000] (imputed)	N
629	chr7	5843572	5843573	rs56351202	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	7p22.1	NR	rs56351202-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
629	chr7	5843572	5843573	rs56351202	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	7p22.1		rs56351202-?	NR	4E-8				NR [~ 8900000] (imputed)	N
629	chr7	5880376	5880377	rs308097	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	7p22.1	NR	rs308097-G	0.966564075211393	2E-6	(IGP48)	0.4299	[0.25-0.61] unit decrease	Illumina [~ 2500000] (imputed)	N
630	chr7	5908435	5908436	rs79857884	32737115	Shirai Y	2020-07-31	Ann Rheum Dis	Association of the RPA3-UMAD1 locus with interstitial lung diseases complicated with rheumatoid arthritis in Japanese.	Interstitial lung diseases in rheumatoid arthritis	358 Japanese ancestry cases, 4,550 Japanese ancestry controls	NA	7p22.1	NR	rs79857884-?	0.029	2E-7		2.96	[1.96-4.46]	Illumina [5934489] (imputed)	N
630	chr7	5949916	5949917	rs148727829	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Age at menopause	approximately 143,000 European ancestry individuals	NA	7p22.1		rs148727829-?	NR	3E-9				NR [~ 8900000] (imputed)	N
630	chr7	6026864	6026865	rs2228007	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	7p22.1		rs2228007-C	0.028729	4E-6		0.09331	[0.053-0.133] unit increase	Affymetrix [15580782] (imputed)	N
631	chr7	6045390	6045391	rs9655491	32141793	Garman L	2020-03-06	Ocul Immunol Inflamm	Genome-Wide Association Study of Ocular Sarcoidosis Confirms HLA Associations and Implicates Barrier Function and Autoimmunity in African Americans.	Ocular sarcoidosis	260 African American cases, 1,551 African American controls	NA	7p22.1	NR	rs9655491-G	NR	9E-6		4.312	[2.26-8.22]	Illumina [13976150] (imputed)	N
631	chr7	6053587	6053587	rs761075897	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	7p22.1	AIMP2	rs761075897-CA	0.438003	5E-15		0.017710611	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
631	chr7	6054388	6054389	rs34097030	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	7p22.1	AIMP2	rs34097030-A	0.2267	3E-12		0.02982401	[0.021-0.038] unit decrease	Affymetrix [~ 2500000] (imputed)	N
631	chr7	6054418	6054419	rs28430759	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	7p22.1	AIMP2	rs28430759-T	0.443805	1E-22		0.022166329	[0.018-0.027] unit increase	Affymetrix [93095623] (imputed)	N
631	chr7	6054418	6054419	rs28430759	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	7p22.1	AIMP2	rs28430759-T	0.443812	6E-20		0.020627538	[0.016-0.025] unit increase	Affymetrix [93095623] (imputed)	N
631	chr7	6054418	6054419	rs28430759	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	7p22.1	AIMP2	rs28430759-T	0.443861	8E-16		0.018134043	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
631	chr7	6066945	6066946	rs10254125	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	7p22.1		rs10254125-?	NR	4E-10				NR [~ 8900000] (imputed)	N
631	chr7	6067146	6067147	rs17136324	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	7p22.1	EIF2AK1	rs17136324-T	0.043324	1E-55		0.08657621	[0.076-0.097] unit increase	Affymetrix [93095623] (imputed)	N
631	chr7	6086609	6086610	rs41282676	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	7p22.1	EIF2AK1	rs41282676-G	0.043306	8E-51		0.08264904	[0.072-0.093] unit increase	Affymetrix [93095623] (imputed)	N
631	chr7	6089025	6089026	rs78429216	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	7p22.1	EIF2AK1	rs78429216-G	0.043299	5E-60		0.08961689	[0.079-0.1] unit increase	Affymetrix [93095623] (imputed)	N
631	chr7	6089025	6089026	rs78429216	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	7p22.1	EIF2AK1	rs78429216-G	0.043304	1E-57		0.087642506	[0.077-0.098] unit increase	Affymetrix [93095623] (imputed)	N
631	chr7	6100868	6100869	rs657466	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	7p22.1		rs657466-?	NR	5E-13				NR [~ 8900000] (imputed)	N
631	chr7	6100880	6100881	rs540350	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	7p22.1	EIF2AK1	rs540350-G	0.543115	8E-13		0.015502	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
631	chr7	6100880	6100881	rs540350	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	7p22.1	EIF2AK1	rs540350-G	0.543152	4E-15		0.01736226	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
631	chr7	6100880	6100881	rs540350	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p22.1	NR	rs540350-G	0.601192	6E-12				Affymetrix, Illumina [24246363] (imputed)	N
631	chr7	6100880	6100881	rs540350	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	7p22.1	NR	rs540350-G	0.546299	9E-13		0.013037	[0.0095-0.0166] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
631	chr7	6105015	6105016	rs190506411	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	7p22.1		rs190506411-A	0.043427	4E-23		0.05456685	[0.044-0.065] unit increase	Affymetrix [93095623] (imputed)	N
632	chr7	6203075	6203076	rs78314028	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	7p22.1	NR	rs78314028-?	NR	4E-7	(AA)	11.47884	[7.12-15.84] unit decrease	Affymetrix [at least 600000] (imputed)	N
632	chr7	6204219	6204220	rs10266841	33649051	Duchen D	2021-03-01	Infect Immun	Host genome wide association study of infant susceptibility to <i>Shigella</i>-associated diarrhea.	Shigella-associated diarrhea	143 Bangladeshi cases, 446 Bangladeshi controls	NA	7p22.1	CYTH3	rs10266841-?	NR	1E-6		0.49	[NR]	Illumina [5729117] (imputed)	N
632	chr7	6278557	6278558	rs74337584	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Cerebrospinal fluid p-tau levels in mild cognitive impairment	581 European ancestry mild cognitive impairment cases	NA	7p22.1	CYTH3, USP42, C7orf70	rs74337584-T	0.	9E-8		1.16	[0.73-1.59] unit decrease	Illumina [8446615] (imputed)	N
633	chr7	6303384	6303385	rs112752366	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7p22.1	NR	rs112752366-A	0.01045	8E-10	(CSTA)	0.05828	NR unit increase	Illumina [1671387] (imputed)	N
633	chr7	6315701	6315702	rs59568570	27611488	Almoguera B	2016-09-09	Am J Respir Crit Care Med	Identification of Four Novel Loci in Asthma in European American and African American Populations.	Asthma	819 African American non-allergic asthma cases, 2,218 African American allergic asthma cases 4,360 African American controls, 808 European American non-allergic asthma cases, 1,464 European American allergic asthma cases, 11,975 European American controls	NA	7p22.1	CYTH3	rs59568570-?		9E-6	(AA)	0.196	[0.12-0.28] unit increase	Affymetrix, Illumina [NR] (imputed)	N
633	chr7	6370076	6370077	rs2241445	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-like 1 protein levels	252 European ancestry individuals	NA	7p22.1		rs2241445-T	NR	5E-6		0.32629	[0.19-0.46] unit decrease	Illumina [NR] (imputed)	N
633	chr7	6381941	6381942	rs6948491	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	7p22.1	FAM220A	rs6948491-A	0.326915	2E-10		0.015251713	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
633	chr7	6381941	6381942	rs6948491	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	7p22.1	FAM220A	rs6948491-A	0.326938	8E-15		0.01858437	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
633	chr7	6402345	6402346	rs11772703	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	7p22.1		rs11772703-C	NR	2E-8		0.0133	[0.0086-0.018] unit decrease	Affymetrix, Illumina [20529698] (imputed)	N
633	chr7	6402345	6402346	rs11772703	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	7p22.1	NR	rs11772703-T	0.707789	6E-9		0.0126573	[0.0084-0.0169] unit increase	NR [NR]	N
633	chr7	6404257	6404258	rs78745308	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	7p22.1	RAC1	rs78745308-G	0.0449878	2E-8		0.08193279	[0.053-0.11] unit increase	Affymetrix [7288503] (imputed)	N
633	chr7	6413022	6413023	rs4397303	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	7p22.1		rs4397303-A	NR	2E-11		0.0205	[0.015-0.026] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
633	chr7	6418274	6418275	rs7784465	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	7p22.1	NA	rs7784465-T	0.8594	2E-9		0.0151	[0.01-0.02] unit decrease	NR [~ 27400000] (imputed)	N
633	chr7	6418672	6418673	rs836489	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Keratinocyte cancer (MTAG)	at least 18,538 European ancestry cases, at least 340,302 European ancestry controls	NA	7p22.1	RAC1	rs836489-G	0.493352	1E-8		1.0526316	[1.03-1.06]	Affymetrix [7600000] (imputed)	N
633	chr7	6418672	6418673	rs836489	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Basal cell carcinoma	31,787 European ancestry cases, 619,351 European ancestry controls	NA	7p22.1	RAC1	rs836489-G	NR	1E-6		1.0416667	[1.02-1.06]	Affymetrix, Illumina [up to 9061544] (imputed)	N
633	chr7	6421768	6421769	rs143222983	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	7p22.1		rs143222983-T	NR	4E-6		5.7627	[3.36-8.17] unit increase	Illumina [NR] (imputed)	N
634	chr7	6426272	6426273	rs35589149	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	7p22.1	NR	rs35589149-?	NR	8E-9				Affymetrix [~ 8270000] (imputed)	N
634	chr7	6426272	6426273	rs35589149	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	7p22.1		rs35589149-?	NR	2E-8				NR [~ 8900000] (imputed)	N
634	chr7	6432749	6432750	rs33986000	31358989	Gelernter J	2019-07-29	Nat Neurosci	Genome-wide association study of post-traumatic stress disorder reexperiencing symptoms in >165,000 US veterans.	Post-traumatic stress disorder (re-experiencing symptoms)	146,660 European ancestry individuals, 19,983 African American individuals	117,900 European ancestry individuals	7p22.1	NR	rs33986000-?	NR	7E-6	(AA)	0.637639	[NR] unit decrease	Affymetrix [49134253] (imputed)	N
634	chr7	6436721	6436722	rs836468	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	7p22.1		rs836468-A	NR	1E-12		0.0177	[0.013-0.023] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
634	chr7	6436865	6436865	rs79237498	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	7p22.1	RAC1	rs79237498-CT	0.2696	8E-9		0.02314674	[0.015-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
634	chr7	6438216	6438217	rs35761891	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	7p22.1		rs35761891-?	NR	3E-12				NR [~ 8900000] (imputed)	N
634	chr7	6440436	6440437	rs836550	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	7p22.1		rs836550-G	NR	1E-8		0.0137	[0.009-0.0184] unit increase	Affymetrix, Illumina [20521447] (imputed)	N
634	chr7	6440436	6440437	rs836550	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	7p22.1	RAC1	rs836550-A	0.594485	5E-8		0.0116032	[0.0074-0.0158] unit decrease	Affymetrix [NR] (imputed)	N
634	chr7	6445259	6445260	rs34022444	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	7p22.1		rs34022444-C	NR	1E-15		0.0196	[0.015-0.024] unit increase	Affymetrix, Illumina [20536134] (imputed)	N
634	chr7	6446026	6446027	rs10951983	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	7p22.1	RAC1	rs10951983-A	0.767026	5E-35		0.0286839	[0.024-0.033] unit decrease	Affymetrix [NR] (imputed)	N
634	chr7	6446026	6446027	rs10951983	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	7p22.1	DAGLB, RAC1	rs10951983-A	0.785	1E-7		0.038	[0.024-0.052] unit increase	Affymetrix [7947838] (imputed)	N
634	chr7	6449271	6449272	rs702485	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Waist-hip ratio and HDL-C (pairwise)	402,477 European ancestry individuals, 11,333 East Asian, South Asian, Hispanic and African American ancestry individuals	NA	7p22.1	DAGLB	rs702485-G	0.4354	7E-14				Affymetrix, Illumina [2331072] (imputed)	N
634	chr7	6449271	6449272	rs702485	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7p22.1	NR	rs702485-A	NR	4E-9		0.021	unit decrease	Affymetrix [at least 7091467] (imputed)	N
634	chr7	6449271	6449272	rs702485	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7p22.1	NR	rs702485-A	0.555	4E-7	(EA)	0.019	unit decrease	Affymetrix [at least 7091467] (imputed)	N
634	chr7	6449271	6449272	rs702485	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	HDL cholesterol levels	34,930 East Asian ancestry individuals, 187,167 European ancestry individuals	8,741 Chinese ancestry individuals	7p22.1	DAGLB	rs702485-A	0.55	1E-14	(Trans-ethnic initial)	0.0243	[0.018-0.031] unit decrease (EA Beta values)	Affymetrix, Illumina [~ 1900000] (imputed)	N
634	chr7	6449271	6449272	rs702485	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	7p22.1	DAGLB	rs702485-G	0.45	6E-12		0.024	[NR] unit increase	NR [NR] (imputed)	N
634	chr7	6449495	6449496	rs2303361	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 157,516 European ancestry women, up to 180,131 African American, South Asian, East Asian and Hispanic ancestry women	up to 62,368 European ancestry women	7p22.1	DAGLB	rs2303361-C	0.2235	3E-9		0.0206	[0.014-0.027] unit increase	Affymetrix, Illumina [at least 228985]	N
634	chr7	6449495	6449496	rs2303361	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 157,516 European ancestry women	up to 62,368 European ancestry women	7p22.1	DAGLB	rs2303361-C	0.2317	4E-9		0.0211	[0.014-0.028] unit increase	Affymetrix, Illumina [at least 228985]	N
634	chr7	6449495	6449496	rs2303361	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	288,492 European ancestry individuals, up to 15,687 African American individuals, up to 29,315 South Asian ancestry individuals, up to 6,800 East Asian ancestry individuals, up to 4,075 Hispanic ancestry individuals	132,177 European ancestry individuals	7p22.1	DAGLB	rs2303361-C	0.2205	6E-8		0.0136	[0.0087-0.0185] unit increase	Affymetrix, Illumina [at least 228985]	N
634	chr7	6449495	6449496	rs2303361	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	288,492 European ancestry individuals	132,177 European ancestry individuals	7p22.1	DAGLB	rs2303361-C	0.2301	4E-8		0.0144	[0.0093-0.0195] unit increase	Affymetrix, Illumina [at least 228985]	N
634	chr7	6453807	6453808	rs4724803	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cholelithiasis	26,122 European ancestry cases, 461,431 European ancestry controls, 9,305 East Asian ancestry cases, 168,253 East Asian ancestry controls	NA	7p22.1		rs4724803-G	NR	2E-8		0.0551	[0.036-0.074] unit increase	Affymetrix, Illumina [25844936] (imputed)	N
634	chr7	6456090	6456091	rs13235365	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	7p22.1	DAGLB	rs13235365-C	0.726389	3E-33		0.0257631	[0.022-0.03] unit decrease	Affymetrix [NR] (imputed)	N
634	chr7	6456318	6456319	rs1055430	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	7p22.1	NR	rs1055430-C	NR	8E-10		0.0319	[0.022-0.042] unit increase	Affymetrix [9000000] (imputed)	N
634	chr7	6458160	6458161	rs836510	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	7p22.1		rs836510-T	NR	1E-8		0.0084	[0.0055-0.0113] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
634	chr7	6461309	6461310	rs79949326	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	7p22.1		rs79949326-T	NR	2E-26		0.0253	[0.021-0.03] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
634	chr7	6461309	6461310	rs79949326	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	High density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	7p22.1	DAGLB	rs79949326-?		7E-10		0.0316	[0.022-0.042] unit decrease	Illumina [31500000] (imputed)	N
634	chr7	6461309	6461310	rs79949326	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	7p22.1	DAGLB	rs79949326-T	0.259879	7E-12		0.017640868	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
634	chr7	6461309	6461310	rs79949326	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	7p22.1	DAGLB	rs79949326-T	0.2327	3E-13		0.024	[0.018-0.03] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
634	chr7	6461309	6461310	rs79949326	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7p22.1	NR	rs79949326-C	NR	4E-12		0.028	unit decrease	Affymetrix [at least 7091467] (imputed)	N
634	chr7	6461309	6461310	rs79949326	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7p22.1	NR	rs79949326-C	0.754	3E-9	(EA)	0.026	unit decrease	Affymetrix [at least 7091467] (imputed)	N
634	chr7	6463364	6463365	rs113080138	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	7p22.1		rs113080138-G	NR	8E-11		0.0169	[0.012-0.022] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
634	chr7	6470621	6470622	rs34421596	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	7p22.1		rs34421596-G	0.746411	1E-9		0.0279259	[0.019-0.037] unit decrease	NR [11722792] (imputed)	N
634	chr7	6479667	6479668	rs836546	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	7p22.1	DAGLB	rs836546-A	NR	4E-15				Affymetrix, Illumina [NR] (imputed)	N
634	chr7	6479667	6479668	rs836546	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	7p22.1	DAGLB	rs836546-A	NR	1E-10	(EA)			Affymetrix, Illumina [NR] (imputed)	N
634	chr7	6479667	6479668	rs836546	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	7p22.1	DAGLB	rs836546-A	NR	8E-12	(EA)			Affymetrix, Illumina [NR] (imputed)	N
634	chr7	6479667	6479668	rs836546	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	7p22.1	DAGLB	rs836546-A	NR	7E-16				Affymetrix, Illumina [NR] (imputed)	N
634	chr7	6479667	6479668	rs836546	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	7p22.1	DAGLB	rs836546-A	NR	1E-6		0.005	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
634	chr7	6486066	6486067	rs7797644	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	7p22.1	DAGLB	rs7797644-T	0.2321	2E-8		0.0386	[0.025-0.052] unit decrease	Affymetrix [at least 7947838] (imputed)	N
634	chr7	6497500	6497501	rs6962012	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	7p22.1	KDELR2, DAGLB	rs6962012-G	0.2269	2E-13		0.03163466	[0.023-0.04] unit increase	Affymetrix [~ 2500000] (imputed)	N
634	chr7	6498056	6498057	rs62454712	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	7p22.1	KDELR2, DAGLB	rs62454712-C	0.241599	2E-14		0.020001346	[0.015-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
634	chr7	6498056	6498057	rs62454712	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	88,929 East Asian ancestry individuals	NA	7p22.1	NR	rs62454712-T	0.648679	5E-10		0.032903	[0.023-0.043] SD units decrease	Affymetrix, Illumina [16289044] (imputed)	N
634	chr7	6498056	6498057	rs62454712	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	7p22.1	KDELR2, DAGLB	rs62454712-C	0.2426	7E-25		0.0432763	[0.035-0.052] unit decrease	Affymetrix [~ 2500000] (imputed)	N
634	chr7	6499646	6499647	rs56133913	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p22.1	NR	rs56133913-G	0.783148	6E-23				Affymetrix, Illumina [22063850] (imputed)	N
634	chr7	6499646	6499647	rs56133913	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	7p22.1	NR	rs56133913-G	0.777073	1E-25		0.02397	[0.019-0.028] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
634	chr7	6502366	6502367	rs6796	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein COLGALT1	5,358 Icelandic ancestry individuals	NA	7p22.1		rs6796-C	0.2323	2E-37		0.274547	[0.23-0.32] unit increase	Illumina [7506463] (imputed)	N
634	chr7	6502366	6502367	rs6796	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	7p22.1		rs6796-C	NR	1E-15		0.0186	[0.014-0.023] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
634	chr7	6502366	6502367	rs6796	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	95,119 East Asian ancestry individuals	NA	7p22.1		rs6796-C	0.381205	1E-12		0.0327417	[0.024-0.042] unit increase	Illumina [13471440] (imputed)	N
634	chr7	6502366	6502367	rs6796	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	7p22.1		rs6796-C	NR	1E-63		0.0379	[0.033-0.042] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
634	chr7	6502366	6502367	rs6796	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	7p22.1		rs6796-T	0.722	1E-23				Affymetrix [10369434] (imputed)	N
634	chr7	6502366	6502367	rs6796	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	7p22.1		rs6796-T	0.722	3E-34				Affymetrix [10369434] (imputed)	N
634	chr7	6502366	6502367	rs6796	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	7p22.1	KDELR2	rs6796-C	0.277977	5E-53		0.03800077	[0.033-0.043] unit decrease	Affymetrix [93095623] (imputed)	N
634	chr7	6502366	6502367	rs6796	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	7p22.1	KDELR2	rs6796-C	0.277939	8E-89		0.04941755	[0.045-0.054] unit increase	Affymetrix [93095623] (imputed)	N
634	chr7	6502366	6502367	rs6796	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	7p22.1	KDELR2	rs6796-C	0.277923	2E-75		0.045455188	[0.041-0.05] unit increase	Affymetrix [93095623] (imputed)	N
634	chr7	6502366	6502367	rs6796	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	7p22.1	KDELR2	rs6796-C	0.278742	6E-34		0.030353624	[0.025-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
634	chr7	6502366	6502367	rs6796	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	7p22.1	KDELR2	rs6796-C	0.277968	5E-30		0.028245682	[0.023-0.033] unit increase	Affymetrix [93095623] (imputed)	N
634	chr7	6502366	6502367	rs6796	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p22.1	NR	rs6796-C	0.291998	1E-109				Affymetrix, Illumina [23467995] (imputed)	N
634	chr7	6502366	6502367	rs6796	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	7p22.1	NR	rs6796-C	0.274261	2E-102		0.045504	[0.041-0.05] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
634	chr7	6502366	6502367	rs6796	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p22.1	NR	rs6796-T	0.719716	6E-48				Affymetrix, Illumina [17210439] (imputed)	N
634	chr7	6502366	6502367	rs6796	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	7p22.1	NR	rs6796-T	0.722368	3E-51		0.032232	[0.028-0.036] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
634	chr7	6502366	6502367	rs6796	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p22.1	NR	rs6796-C	0.292001	7E-40				Affymetrix, Illumina [23472807] (imputed)	N
634	chr7	6502366	6502367	rs6796	32595297	Kweon K	2018-04-01	Soa Chongsonyon Chongsin Uihak	Genome-Wide Analysis Reveals Four Novel Loci for Attention-Deficit Hyperactivity Disorder in Korean Youths.	Attention deficit hyperactivity disorder (inattention symptoms)	27 Korean ancestry child sibling pairs	NA	7p22.1	KDELR2, DAGLB	rs6796-C	0.491	3E-7				Affymetrix [432921]	N
634	chr7	6502366	6502367	rs6796	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	7p22.1	KDELR2	rs6796-C	0.2773	5E-45		0.05592196	[0.048-0.064] unit increase	Affymetrix [~ 2500000] (imputed)	N
634	chr7	6502366	6502367	rs6796	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	7p22.1	KDELR2	rs6796-C	0.2774	1E-36		0.05028517	[0.042-0.058] unit increase	Affymetrix [~ 2500000] (imputed)	N
634	chr7	6502366	6502367	rs6796	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	7p22.1	KDELR2	rs6796-C	0.2783	5E-15		0.03154139	[0.024-0.039] unit decrease	Affymetrix [~ 2500000] (imputed)	N
634	chr7	6502366	6502367	rs6796	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	7p22.1	KDELR2	rs6796-C	0.2773	2E-50		0.05942082	[0.052-0.067] unit decrease	Affymetrix [~ 2500000] (imputed)	N
634	chr7	6503517	6503518	rs58074950	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	7p22.1	KDELR2, DAGLB	rs58074950-T	0.217858	7E-17		0.023079714	[0.018-0.028] unit increase	Affymetrix [93095623] (imputed)	N
634	chr7	6504239	6504240	rs73057397	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7p22.1		rs73057397-?	NR	2E-10				NR [~ 8900000] (imputed)	N
634	chr7	6504239	6504240	rs73057397	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Monocyte count	62,076 Japanese ancestry individuals	NA	7p22.1	KDELR2	rs73057397-?	NR	9E-11		0.03907	[0.027-0.051] unit increase novel	Illumina [6108953] (imputed)	N
634	chr7	6516034	6516035	rs12702514	25248455	Ek WE	2014-09-23	Gut	Exploring the genetics of irritable bowel syndrome: a GWA study in the general population and replication in multinational case-control cohorts.	Irritable bowel syndrome	534 European ancestry cases, 4,932 European ancestry controls	1,718 European ancestry cases, 1,793 European ancestry controls	7p22.1	KDELR2, GRID2IP	rs12702514-T	0.41	5E-6		1.21	[1.13-1.30]	Illumina [1253036] (imputed)	N
634	chr7	6520675	6520676	rs6964421	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	7p22.1		rs6964421-?	NR	1E-27				NR [~ 8900000] (imputed)	N
634	chr7	6524842	6524843	rs2347784	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MANF	5,363 Icelandic ancestry individuals	NA	7p22.1		rs2347784-G	0.2328	1E-27		0.2432	[0.2-0.29] unit increase	Illumina [7506463] (imputed)	N
634	chr7	6524842	6524843	rs2347784	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	7p22.1		rs2347784-G	NR	1E-23		0.0232	[0.019-0.028] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
634	chr7	6524842	6524843	rs2347784	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	7p22.1	FLJ20306	rs2347784-G	0.271332	2E-27		0.02699547	[0.022-0.032] unit increase	Affymetrix [93095623] (imputed)	N
634	chr7	6524842	6524843	rs2347784	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	7p22.1	NR	rs2347784-G	0.268157	7E-39		0.028115	[0.024-0.032] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
634	chr7	6524842	6524843	rs2347784	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	7p22.1	KDELR2	rs2347784-G	0.27	7E-43	(Procollagen galactosyltransferase 1, COLGALT1.5638.23.3)	0.37	[0.31-0.43] unit increase	Affymetrix [10572788] (imputed)	N
634	chr7	6524842	6524843	rs2347784	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	7p22.1	FLJ20306	rs2347784-G	0.2712	9E-11		0.02629952	[0.018-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
634	chr7	6526005	6526006	rs12702516	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	7p22.1	NR	rs12702516-A	0.152151	4E-9		0.0110939	[0.0075-0.0147] unit increase	Affymetrix [16578495] (imputed)	N
634	chr7	6538985	6538986	rs142659860	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	7p22.1	NR	rs142659860-?	NR	5E-6		19.16	NR unit increase	Affymetrix [at least 600000] (imputed)	N
634	chr7	6541013	6541014	rs73059342	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	7p22.1	NR	rs73059342-?	NR	5E-6		19.16	NR unit increase	Affymetrix [at least 600000] (imputed)	N
634	chr7	6545187	6545188	rs11768365	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Ulcerative colitis	12,366 European and unknown ancestry cases, 33,609 European and unknown ancestry controls	NA	7p22.1	FLJ20306, DAGLB, KDELR2, GRID2IP	rs11768365-?		2E-6				Illumina [9578670] (imputed)	N
634	chr7	6545187	6545188	rs11768365	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	7p22.1	FLJ20306, DAGLB, KDELR2, GRID2IP	rs11768365-A	0.816	4E-8		1.09	1.06-1.12	Illumina [9725440] (imputed)	N
634	chr7	6547759	6547760	rs556723179	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	7p22.1	NR	rs556723179-?	NR	5E-6		19.16	NR unit increase	Affymetrix [at least 600000] (imputed)	N
635	chr7	6568129	6568130	rs144411455	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		GRID2IP	rs144411455-?	NR	6E-11	(female)	0.624205	[NR] unit increase	Affymetrix [NR] (imputed)	N
635	chr7	6574806	6574807	rs6946362	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	7p22.1		rs6946362-T	0.6884	2E-9		0.0091	[0.0062-0.012] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
635	chr7	6574806	6574807	rs6946362	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	7p22.1	Intergenic	rs6946362-T	0.6884	3E-10	(MTAG)	0.009	[0.0063-0.0117] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
635	chr7	6600550	6600551	rs79195150	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	7p22.1		rs79195150-T	NR	3E-11		0.0135	[0.0096-0.0174] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
635	chr7	6617246	6617247	rs11559147	32890573	Yan Q	2020-09-02	J Allergy Clin Immunol	A genome-wide association study of asthma hospitalizations in adults.	Exacerbations requiring hospitalisation in asthma	1,658 British ancestry cases, 32,509 British ancestry controls	NA	7p22.1	NR	rs11559147-C	0.29	4E-6		1.19	[NR]	Affymetrix [87696888] (imputed)	N
635	chr7	6620756	6620757	rs4605951	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	7p22.1	NR	rs4605951-G	0.864214	6E-11		0.019198	[0.013-0.025] SD unit increase	Affymetrix, Illumina [50282193] (imputed)	N
635	chr7	6634332	6634333	rs79000164	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	7p22.1	NR	rs79000164-C	NR	6E-10		0.0414	[0.028-0.055] unit decrease	Affymetrix [9000000] (imputed)	N
635	chr7	6658660	6658661	rs112134552	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA			rs112134552-?	NR	9E-8				NR [~ 8900000] (imputed)	N
635	chr7	6660789	6660790	rs940873	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	7p22.1	ZNF853	rs940873-A	0.232348	1E-9		0.0162145	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
635	chr7	6663346	6663347	rs2247744	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	7p22.1		rs2247744-?	NR	2E-10				NR [~ 8900000] (imputed)	N
635	chr7	6674857	6674858	rs13227497	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	7p22.1	NR	rs13227497-T	0.840422	7E-9		0.016194	[0.011-0.022] unit decrease	NR [NR]	N
636	chr7	6692604	6692605	rs1474419	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	7p22.1	NR	rs1474419-C	0.579762	3E-22		0.018298	[0.015-0.022] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
636	chr7	6692604	6692605	rs1474419	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p22.1	NR	rs1474419-C	0.636468	2E-17				Affymetrix, Illumina [23114412] (imputed)	N
636	chr7	6692604	6692605	rs1474419	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	7p22.1	NR	rs1474419-C	0.578829	3E-19		0.017679	[0.014-0.022] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
636	chr7	6692604	6692605	rs1474419	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	7p22.1		rs1474419-?	NR	5E-21				NR [~ 8900000] (imputed)	N
636	chr7	6701188	6701189	rs2246223	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	7p22.1	NR	rs2246223-T	0.555122	4E-10		0.00767245	[0.0052-0.0101] unit increase	Affymetrix [16585854] (imputed)	N
636	chr7	6701188	6701189	rs2246223	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	7p22.1	NR	rs2246223-T	0.555122	3E-6		0.0067683	[0.004-0.0096] unit increase	Affymetrix [16585866] (imputed)	N
636	chr7	6702310	6702311	rs2462661	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	7p22.1	AC073343.13	rs2462661-G	0.576012	2E-14		0.017125234	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
636	chr7	6702310	6702311	rs2462661	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	7p22.1	NR	rs2462661-G	0.575275	1E-16		0.0070844	[0.0054-0.0087] unit increase	Affymetrix [16582909] (imputed)	N
636	chr7	6702310	6702311	rs2462661	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	7p22.1	NR	rs2462661-G	0.575275	1E-8		0.0055435	[0.0037-0.0074] unit increase	Affymetrix [16582965] (imputed)	N
636	chr7	6704331	6704332	rs2251188	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	7p22.1	AC073343.13	rs2251188-G	0.5764	5E-9		0.02136739	[0.014-0.029] unit increase	Affymetrix [~ 2500000] (imputed)	N
636	chr7	6704331	6704332	rs2251188	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	7p22.1	AC073343.13	rs2251188-G	0.5764	5E-9		0.02125792	[0.014-0.028] unit increase	Affymetrix [~ 2500000] (imputed)	N
636	chr7	6713935	6713936	rs7798061	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	7p22.1		rs7798061-?	NR	2E-8				NR [~ 8900000] (imputed)	N
636	chr7	6714788	6714791	rs71844696	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	7p22.1	NR	rs71844696-C	NR	1E-10		0.0264	[0.018-0.034] unit increase	Affymetrix [9000000] (imputed)	N
636	chr7	6718673	6718674	rs1830074	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	7p22.1	CYTH3, FAM220A, RAC1, DAGLB, KDELR2, GRID2IP, ZDHHC4, C7orf26, ZNF853, PMS2CL, RSPH10B2, RSPH10B, CCZ1B, LOC100131257	rs1830074-T	0.703711407286402	1E-8		0.019227829	unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
636	chr7	6718673	6718674	rs1830074	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	7p22.1	ZNF12	rs1830074-C	0.299	3E-6		0.019	[0.011-0.027] kg/m2 increase	Affymetrix, Illumina [2550021]	N
636	chr7	6718673	6718674	rs1830074	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	7p22.1	ZNF12	rs1830074-C	0.296	4E-6	(EA, women)	0.025	[0.014-0.035] kg/m2 increase	Affymetrix, Illumina [2550021]	N
636	chr7	6731802	6731803	rs199761265	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	7p22.1	NR	rs199761265-A	NR	2E-10		0.1916	[0.13-0.25] unit increase	Affymetrix [9000000] (imputed)	N
636	chr7	6734140	6734141	rs3801034	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	7p22.1		rs3801034-?	NR	2E-8				NR [~ 8900000] (imputed)	N
636	chr7	6736331	6736332	rs13224671	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	7p22.1	NR	rs13224671-T	NR	4E-17		0.0419	[0.032-0.052] unit decrease	Affymetrix [9000000] (imputed)	N
636	chr7	6744956	6744957	rs7798471	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting insulin	50,404 European ancestry women	NA	7p22.1	ZNF12	rs7798471-C	0.273	2E-8		0.0262	[0.017-0.035] unit increase	Affymetrix, Illumina [8700000] (imputed)	N
636	chr7	6744956	6744957	rs7798471	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting insulin	105,056 European ancestry individuals	NA	7p22.1	ZNF12	rs7798471-C	0.273	2E-7		0.0166	[0.01-0.023] unit increase	Affymetrix, Illumina [8700000] (imputed)	N
636	chr7	6747266	6747267	rs7786706	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	7p22.1		rs7786706-T	NR	8E-10		0.013	[0.0089-0.0171] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
636	chr7	6747266	6747267	rs7786706	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	7p22.1	AC073343.13	rs7786706-T	0.159657	4E-12		0.020912481	[0.015-0.027] unit increase	Affymetrix [93095623] (imputed)	N
636	chr7	6747266	6747267	rs7786706	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p22.1	NR	rs7786706-T	0.188291	4E-15				Affymetrix, Illumina [24558453] (imputed)	N
636	chr7	6749757	6749758	rs6967414	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	7p22.1		rs6967414-A	NR	3E-9		0.0143	[0.0096-0.019] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
636	chr7	6749757	6749758	rs6967414	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	7p22.1	PMS2CL, ZNF12	rs6967414-A	0.107017	4E-11		0.023607526	[0.017-0.031] unit increase	Affymetrix [93095623] (imputed)	N
636	chr7	6749757	6749758	rs6967414	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p22.1	NR	rs6967414-A	0.145192	9E-15				Affymetrix, Illumina [24653286] (imputed)	N
636	chr7	6749757	6749758	rs6967414	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	7p22.1	NR	rs6967414-A	0.108657	2E-14		0.02285	[0.017-0.029] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
636	chr7	6749757	6749758	rs6967414	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	7p22.1	NR	rs6967414-A	0.108661	9E-15		0.023136	[0.017-0.029] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
636	chr7	6749757	6749758	rs6967414	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	7p22.1	ZNF12	rs6967414-A		6E-7		0.02	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
636	chr7	6749757	6749758	rs6967414	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	7p22.1	ZNF12, PMS2CL	rs6967414-A	0.1068	4E-10		0.03590529	[0.025-0.047] unit increase	Affymetrix [~ 2500000] (imputed)	N
636	chr7	6749757	6749758	rs6967414	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	7p22.1	ZNF12, PMS2CL	rs6967414-A	0.1068	1E-10		0.0371133	[0.026-0.048] unit increase	Affymetrix [~ 2500000] (imputed)	N
636	chr7	6755723	6755724	rs6954012	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	7p22.1	PMS2CL	rs6954012-C	0.111909	4E-13		0.02539673	[0.019-0.032] unit increase	Affymetrix [93095623] (imputed)	N
636	chr7	6758937	6758938	rs10951992	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	7p22.1		rs10951992-C	NR	3E-18		0.0182	[0.014-0.022] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
636	chr7	6758937	6758938	rs10951992	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	154,355 East Asian ancestry individuals	NA	7p22.1		rs10951992-C	0.563829	5E-9		0.0237105	[0.016-0.032] unit increase	Illumina [13479091] (imputed)	N
636	chr7	6758937	6758938	rs10951992	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p22.1	NR	rs10951992-C	0.487741	8E-26				Affymetrix, Illumina [24649327] (imputed)	N
636	chr7	6774134	6774135	rs60111824	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Ejection fraction in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	7p22.1	NR	rs60111824-?	NR	9E-6				Affymetrix [5486770] (imputed)	N
637	chr7	6835671	6835672	rs141498685	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	7p22.1	NR	rs141498685-C	0.287594	2E-8		0.0478974	[0.031-0.065] unit decrease	Affymetrix [17914406] (imputed)	N
637	chr7	6870111	6870112	rs146997164	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		7p22.1	Intergenic	rs146997164-C	0.97	9E-6	(liability model)	0.26	[0.14-0.38] unit decrease	NR [19725427] (imputed)	N
637	chr7	6874272	6874273	rs4724860	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	7p22.1	OR7E39P	rs4724860-A	0.234557	4E-11		0.01806375	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
637	chr7	6874272	6874273	rs4724860	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	7p22.1	OR7E39P	rs4724860-A	0.234555	2E-10		0.017318705	[0.012-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
637	chr7	6874272	6874273	rs4724860	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	7p22.1	OR7E39P	rs4724860-A	0.234505	7E-10		0.0167674	[0.011-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
637	chr7	6874272	6874273	rs4724860	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	7p22.1	OR7E39P	rs4724860-A	0.234509	1E-9		0.016484547	[0.011-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
637	chr7	6901709	6901710	rs7456039	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	7p22.1	CCZ1B, LOC100131257	rs7456039-C	0.1829	1E-18		8.817	[NR] z score increase	Affymetrix, Illumina [~ 11000000] (imputed)	N
637	chr7	6901709	6901710	rs7456039	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Myopia (age of diagnosis)	104,293 European ancestry individuals	NA	7p22.1	NR	rs7456039-C	0.2005	5E-30		0.202	[0.17-0.24] unit increase	Illumina [~ 10600000] (imputed)	N
637	chr7	6908859	6908860	rs187857322	30820047	Kunkle BW	2019-02-28	Nat Genet	Genetic meta-analysis of diagnosed Alzheimer's disease identifies new risk loci and implicates A?, tau, immunity and lipid processing.	Alzheimer's disease (late onset)	21,982 European ancestry cases, 41,944 European ancestry controls	up to 13,292 European ancestry cases, up to 17,219 European ancestry controls	7p22.1	CCZ1B	rs187857322-?	NR	2E-6		1.63	[1.33-2.00]	Affymetrix, Illumina [11480632] (imputed)	N
637	chr7	6933725	6933726	rs143803034	33731350	Nandakumar P	2021-03-17	Sci Adv	Nuclear genome-wide associations with mitochondrial heteroplasmy.	Mitochondrial heteroplasmy measurement	982,072 European ancestry individuals	NA	7p22.1	CCZ1B	rs143803034-G	0.961	2E-11		0.015	[0.011-0.019] unit decrease	NR [57525634] (imputed)	N
638	chr7	6964605	6964606	rs58404784	33232274	Mohammadnejad A	2020-11-24	Aging (Albany NY)	Generalized correlation coefficient for genome-wide association analysis of cognitive ability in twins.	Cognitive function (generalized correlation coefficient)	278 Chinese ancestry dizygotic twins	NA	7p22.1	NR	rs58404784-?	NR	7E-7			[NR]	Illumina [5432814] (imputed)	N
638	chr7	6971049	6971050	rs188966536	26911590	Mullin BH	2016-02-25	BMC Genomics	Genome-wide association study using family-based cohorts identifies the WLS and CCDC170/ESR1 loci as associated with bone mineral density.	Bone mineral density (spine)	1,042 Northern European ancestry individuals	5,654 Northern European ancestry individuals	7p22.1	CCZ1B	rs188966536-T	0.02	8E-8		0.67	[0.43-0.91] g/cm2 increase	Illumina [NR] (imputed)	N
638	chr7	6974840	6974841	rs118057640	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip	15 Asian ancestry cases, 13 European ancestry cases, 15 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	7p22.1	NR	rs118057640-?	NR	2E-6		5.99	[4.09-8.79]	Illumina [539000] (imputed)	N
638	chr7	7053610	7053611	rs10261824	34838041	Naderi E	2021-11-27	J Transl Med	A two-stage genome-wide association study of radiation-induced acute toxicity in head and neck cancer.	radiation-induced toxicity (patient-rated acute sticky saliva)	799 Dutch ancestry individuals	214 Dutch ancestry individuals	7p22.1		rs10261824-C	NR	4E-6		0.1345	[0.078-0.191] decrease	Illumina [6334277] (imputed)	N
639	chr7	7093311	7093312	rs16876441	32063569	Alemany-Navarro M	2020-01-29	J Affect Disord	Exploring genetic variants in obsessive compulsive disorder severity: A GWAS approach.	Compulsion score in obsessive compulsive disorder	376 Spanish ancestry individuals	NA	7p22.1	MIR3683	rs16876441-?	NR	9E-6		2.7562728	NR unit decrease	Illumina [338357]	N
639	chr7	7159890	7159891	rs199656581	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7p22.1	NR	rs199656581-A	0.01045	9E-9	(SEPT11)	0.04178	NR unit increase	Illumina [1671387] (imputed)	N
639	chr7	7195466	7195467	rs188324495	25839716	Ng E	2015-04-02	Environ Res	Genome-wide association study of plasma levels of polychlorinated biphenyls disclose an association with the CYP2B6 gene in a population-based sample.	Polychlorinated biphenyl levels	922 European ancestry individuals	NA	7p22.1	NR	rs188324495-?		2E-7	(PCB105)	1.32	[0.83-1.81] unit decrease	Illumina [8736858] (imputed)	N
640	chr7	7221774	7221775	rs7803355	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	7p22.1		rs7803355-T	NR	2E-10		0.0447	[0.031-0.059] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
640	chr7	7221774	7221775	rs7803355	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	7p22.1	C1GALT1	rs7803355-T	0.114798	4E-11		0.06257799	[0.044-0.081] unit increase	Affymetrix [7288503] (imputed)	N
640	chr7	7221967	7221968	rs758263	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	7p22.1	NR	rs758263-T		2E-8		0.06	[0.04-0.08] unit increase	NR [NR]	N
640	chr7	7223415	7223416	rs59076890	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	7p22.1		rs59076890-T	0.13	6E-9		5.81	z score increase	Affymetrix [9061022] (imputed)	N
640	chr7	7229825	7229826	rs1010366	26969751	Parmar PG	2016-03-11	Circ Cardiovasc Genet	International Genome-Wide Association Study Consortium Identifies Novel Loci Associated With Blood Pressure in Children and Adolescents.	Systolic blood pressure	5,008 European ancestry prepubescent females, 5,082 European ancestry prepubescent males, 4,238 European ancestry pubescent females, 4,185 European ancestry pubescent males, 2,680 European ancestry post-pubescent females, 2,496 European ancestry post-pubescent males	NA	7p22.1	C1GALT1	rs1010366-?	NR	3E-6	(Post-puberty)	0.098	[0.057-0.139] unit increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
640	chr7	7239554	7239555	rs4476914	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	7p22.1	NR	rs4476914-T	0.1152	9E-10				NR [9056863] (imputed)	N
640	chr7	7246845	7246846	rs13226913	28187132	Kiryluk K	2017-02-10	PLoS Genet	GWAS for serum galactose-deficient IgA1 implicates critical genes of the O-glycosylation pathway.	Serum galactose-deficient IgA1 levels	950 Han Chinese ancestry individuals, 245 European ancestry individuals	653 East Asian ancestry individuals, 785 European ancestry individuals	7p21.3	C1GALT1	rs1322691-T	NR	8E-7		0.21	[0.13-0.29] unit increase	Illumina [468781]	N
640	chr7	7249746	7249747	rs11763876	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Type 2 diabetes	approximately 459,000 European ancestry individuals	NA	7p21.3		rs11763876-?	NR	7E-8				NR [~ 8900000] (imputed)	N
640	chr7	7252248	7252249	rs7786560	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	7p21.3	C1GALT1	rs7786560-?		2E-17				Affymetrix, Illumina [NR] (imputed)	N
640	chr7	7253519	7253520	rs2108791	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 28)	3,566 European ancestry individuals	4,680 European ancestry individuals	7p21.3		rs2108791-T	0.116554054	3E-8				Illumina [7417619] (imputed)	N
640	chr7	7255016	7255017	rs10238682	33593824	Wang YN	2021-02-16	J Am Soc Nephrol	Interaction between <i>G</i> <i>ALNT12</i> and <i>C1GALT1</i> Associates with Galactose-Deficient IgA1 and IgA Nephropathy.	Serum galactose-deficient IgA1 levels in IgA nephropathy	849 Han Chinese ancestry individuals	313 Han Chinese ancestry individuals	7p21.3	C1GALT1	rs10238682-A	0.51	1E-9		0.26	unit increase	Illumina [5737162] (imputed)	N
640	chr7	7256439	7256440	rs2881756	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	7p21.3		rs2881756-?	NR	2E-15				NR [~ 8900000] (imputed)	N
640	chr7	7256489	7256490	rs4318980	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	7p21.3	C1GALT1	rs4318980-A	0.4147	1E-7		0.0136	[0.0085-0.0187] unit decrease	Affymetrix [19819130] (imputed)	N
640	chr7	7256489	7256490	rs4318980	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	7p21.3	C1GALT1	rs4318980-A	0.4147	9E-13		0.0172	[0.012-0.022] unit decrease	Affymetrix [19819130] (imputed)	N
640	chr7	7256489	7256490	rs4318980	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	7p21.3	C1GALT1	rs4318980-A	0.4147	5E-8		0.0129	[0.0082-0.0176] unit decrease	Affymetrix [19819130] (imputed)	N
640	chr7	7257367	7257368	rs79935034	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs non-severe)	86 Finnish ancestry male severe erosion cases, 50 Finnish ancestry female severe erosion cases, 817 Finnish ancestry male non-severe erosion controls, 991 Finnish ancestry female non-severe erosion controls	NA	7p21.3	C1GALT1	rs79935034-?	NR	7E-8	(female)	5.9	[2.73-12.62]	Illumina [NR] (imputed)	N
640	chr7	7259269	7259270	rs12702595	24159190	Seppala I	2013-10-24	Eur Heart J	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Symmetrical dimethylarginine levels	5110 European ancestry individuals	NA	7p21.3	NR	rs12702595-A	0.444	1E-6		0.099	[0.06-0.138] unit decrease	Affymetrix, Illumina [10085758] (imputed)	N
640	chr7	7259269	7259270	rs12702595	24159190	Seppala I	2013-10-24	Eur Heart J	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Serum dimethylarginine levels (asymmetric/symetric ratio)	5110 European ancestry individuals	NA	7p21.3	NR	rs12702595-A	0.444	6E-7		0.101	[0.062-0.14] unit increase	Affymetrix, Illumina [10085758] (imputed)	N
640	chr7	7264081	7264082	rs76450081	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	7p21.3		rs76450081-G	NR	2E-10		0.0154	[0.011-0.02] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
640	chr7	7268430	7268431	rs10259085	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	7p21.3		rs10259085-T	0.4316	2E-8		0.12506258	[0.081-0.169] mmHg increase	Affymetrix, Illumina [242865] (imputed)	N
640	chr7	7268430	7268431	rs10259085	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	7p21.3		rs10259085-T	0.4314	4E-10		0.08755929	[0.06-0.115] mmHg increase	Affymetrix, Illumina [242866] (imputed)	N
640	chr7	7268430	7268431	rs10259085	19010793	Baranzini SE	2008-11-14	Hum Mol Genet	Genome-wide association analysis of susceptibility and clinical phenotype in multiple sclerosis.	Multiple sclerosis (severity)	794 European ancestry cases, 883 European ancestry controls	NA	7p21.3	C1GALT1	rs10259085-?	0.46	4E-6			[NR]	Illumina [551642]	N
640	chr7	7270011	7270012	rs7787942	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	7p21.3	C1GALT1	rs7787942-T	0.441	1E-28	(C1GALT1-specific chaperone 1, C1GALT1C1.5735.54.3)	0.27	[0.23-0.31] unit increase	Affymetrix [10572788] (imputed)	N
640	chr7	7273439	7273440	rs1008897	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	7p21.3		rs1008897-A	NR	6E-15		0.0178	[0.013-0.022] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
640	chr7	7273439	7273440	rs1008897	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	7p21.3	C1GALT1	rs1008897-G	0.37	2E-11		6.74	z-score increase	Affymetrix [4314223] (imputed)	N
640	chr7	7273439	7273440	rs1008897	28187132	Kiryluk K	2017-02-10	PLoS Genet	GWAS for serum galactose-deficient IgA1 implicates critical genes of the O-glycosylation pathway.	Serum galactose-deficient IgA1 levels	950 Han Chinese ancestry individuals, 245 European ancestry individuals	653 East Asian ancestry individuals, 785 European ancestry individuals	7p21.3	C1GALT1	rs1008897-G	NR	5E-8		0.24	[0.16-0.32] unit increase	Illumina [468781]	N
640	chr7	7273558	7273559	rs1008898	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	7p21.3	C1GALT1	rs1008898-T	0.215	2E-6		0.037	[0.021-0.053] unit increase	Affymetrix [7947838] (imputed)	N
640	chr7	7277214	7277215	rs11771259	30940143	Zhu Z	2019-04-02	Respir Res	Genetic overlap of chronic obstructive pulmonary disease and cardiovascular disease-related traits: a large-scale genome-wide cross-trait analysis.	Chronic obstructive pulmonary disease or high blood pressure (pleiotropy)	12,550 European and unknown ancestry chronic obstructive pulmonary disease cases, 46,368 European and unknown ancestry controls, 144,793 European ancestry high blood pressure cases, 313,761 European ancestry controls	NA	7p21.3	C1GALT1, LOC101927354	rs11771259-?	NR	7E-18				Affymetrix [up to 7325140] (imputed)	N
640	chr7	7277214	7277215	rs11771259	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	7p21.3		rs11771259-?	NR	1E-16				NR [~ 8900000] (imputed)	N
640	chr7	7286444	7286445	rs10246303	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FEV1/FVC)	48,943 European ancestry individuals	57,176 European ancestry individuals, 38,199 individuals.	7p21.3	C1GALT1	rs10246303-T	0.41	2E-8		0.022	[0.014-0.03] unit decrease	Affymetrix [27624732] (imputed)	N
640	chr7	7290731	7290732	rs1468520	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	NA	7p21.3	C1GALT1	rs1468520-A	0.8329	3E-12		0.1638	[0.12-0.21] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
640	chr7	7296519	7296520	rs10279324	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C1GALT1C1	5,314 Icelandic ancestry individuals	NA	7p21.3		rs10279324-G	0.465	1E-29		0.151049	[0.12-0.18] unit decrease	Illumina [7506463] (imputed)	N
640	chr7	7302292	7302293	rs1299548	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue adjusted for BMI	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	7p21.3	C1GALT1	rs1299548-A	0.46	4E-6	(men)			Affymetrix, Illumina [2500000] (imputed)	N
640	chr7	7312734	7312735	rs7782993	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Daytime sleep phenotypes	874 European ancestry individuals	NA	7p21.3	AC005532.5, C1GALT1, COL28A1, MIR3683	rs7782993-G	NR	2E-6	(daytime napping duration)	0.08231	[0.049-0.116] unit decrease	Affymetrix [7141204] (imputed)	N
640	chr7	7313484	7313485	rs6953213	24556642	Zeng Z	2014-02-18	Caries Res	Genome-wide association study of primary dentition pit-and-fissure and smooth surface caries.	Smooth-surface caries	1006 European ancestry individuals	NA	7p21.3	C1GALT1	rs6953213-A	0.0429	6E-6		2.4305	[NR] unit increase	Illumina [1216189] (imputed)	N
641	chr7	7342062	7342063	rs4351339	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	7p21.3	COL28A1, C1GALT1, MIR3683	rs4351339-T	NR	8E-6	(wake after sleep onset)	0.07616	[0.043-0.11] unit increase	Affymetrix [7141204] (imputed)	N
641	chr7	7352162	7352163	rs10250359	34112972	DeMichele-Sweet MAA	2021-06-10	Mol Psychiatry	Genome-wide association identifies the first risk loci for psychosis in Alzheimer disease.	Psychosis in Alzheimer's disease	4,551 European ancestry cases, 5,796 European ancestry controls, 894 African American or unknown ancestry cases, 1,076 African American or unknown ancestry controls	NA	7p21.3		rs10250359-A	NR	8E-6		1.13	[1.07-1.19]	Illumina [7105229] (imputed)	N
641	chr7	7399403	7399404	rs10486158	20889312	Wang KS	2010-10-01	Schizophr Res	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	7p21.3	NR	rs10486158-?	NR	6E-6		1.2739	[NR]	Affymetrix [722112]	N
641	chr7	7426787	7426788	rs77488208	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	7p21.3	NR	rs77488208-?	NR	2E-8				Illumina [7760689] (imputed)	N
642	chr7	7524225	7524226	rs6962939	29724592	Pottier C	2018-04-30	Lancet Neurol	Potential genetic modifiers of disease risk and age at onset in patients with frontotemporal lobar degeneration and GRN mutations: a genome-wide association study.	Frontotemporal dementia with GRN mutation (age at onset)	382 European ancestry individuals	67 European ancestry individuals	7p21.3	COL28A1	rs6962939-A	0.05	5E-6		5.76	[8.22-3.29] unit decrease	Illumina [7033776] (imputed)	N
642	chr7	7524225	7524226	rs6962939	29724592	Pottier C	2018-04-30	Lancet Neurol	Potential genetic modifiers of disease risk and age at onset in patients with frontotemporal lobar degeneration and GRN mutations: a genome-wide association study.	Frontotemporal dementia (age at onset)	382 European ancestry GRN mutation carrier individuals	67 European ancestry GRN mutation carrier individuals, 143 European ancestry GRN negative individuals	7p21.3	COL28A1	rs6962939-A	0.06	8E-7		6.04	unit decrease	Illumina [7033776] (imputed)	N
642	chr7	7526926	7526927	rs6964593	30796134	Soderholm M	2019-02-22	Neurology	Genome-wide association meta-analysis of functional outcome after ischemic stroke.	3-month functional outcome in ischaemic stroke (modified Rankin score)	1,832 European and unknown ancestry modified Rankin score 0-1 cases, 2,620 European and unknown ancestry modified Rankin score 2-6 cases	NA	7p21.3	COL28A1	rs6964593-T	0.83	8E-6	(adjusted for severity)	1.369863	[1.23-1.51]	Affymetrix, Illumina [~ 8500000] (imputed)	N
642	chr7	7571419	7571420	rs17168526	22610502	Kennedy RB	2012-05-19	Hum Genet	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IL-1beta)	Up to 512 European ancestry individuals, up to 199 African American individuals	NA	7p21.3	COL28A1	rs17168526-G		6E-8	(AA)			Illumina [NR]	N
643	chr7	7680696	7680697	rs17169194	29779033	Hishida A	2018-05-18	Am J Nephrol	Genome-Wide Association Study of Renal Function Traits: Results from the Japan Multi-Institutional Collaborative Cohort Study.	Serum creatinine levels	11,283 Japanese ancestry individuals	148,829 Japanese ancestry individuals	7p21.3	RPA3	rs17169194-?	0.331	9E-7		0.0118	[0.0071-0.0165] unit increase	Illumina [6288024] (imputed)	N
643	chr7	7680696	7680697	rs17169194	29779033	Hishida A	2018-05-18	Am J Nephrol	Genome-Wide Association Study of Renal Function Traits: Results from the Japan Multi-Institutional Collaborative Cohort Study.	Estimated glomerular filtration rate	11,283 Japanese ancestry individuals	148,829 Japanese ancestry individuals	7p21.3	RPA3	rs17169194-?	0.331	7E-7		0.013	[0.0079-0.0181] unit decrease	Illumina [6288024] (imputed)	N
643	chr7	7687618	7687619	rs6463711	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on self-rated math ability (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	7p21.3		rs6463711-?	NR	1E-8				NR [NR]	N
643	chr7	7687618	7687619	rs6463711	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on highest math class (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	7p21.3		rs6463711-?	NR	2E-8				NR [NR]	N
643	chr7	7693918	7693919	rs12538804	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in obese individuals	4,613 European ancestry male individuals, 4,690 European ancestry female individuals, 142 European ancestry individuals	NA	7p21.3	RPA3	rs12538804-G	0.24	6E-6		0.08	[0.045-0.115] kg/m2 decrease	Affymetrix, Illumina [at least 188473] (imputed)	N
643	chr7	7705274	7705275	rs4720750	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on educational attainment (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	7p21.3		rs4720750-?	NR	4E-8				NR [NR]	N
643	chr7	7705274	7705275	rs4720750	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on cognitive performance (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	7p21.3		rs4720750-?	NR	3E-8				NR [NR]	N
643	chr7	7705274	7705275	rs4720750	27067015	Smith DJ	2016-04-12	Mol Psychiatry	Genome-wide analysis of over 106 000 individuals identifies 9 neuroticism-associated loci.	Neuroticism	91,370 European ancestry individuals, 15,346 individuals	NA	7p21.3	Intergenic	rs4720750-A		3E-6		0.083	[0.048-0.118] unit decrease	Affymetrix [7207648] (imputed)	N
643	chr7	7711731	7711732	rs12702634	32737115	Shirai Y	2020-07-31	Ann Rheum Dis	Association of the RPA3-UMAD1 locus with interstitial lung diseases complicated with rheumatoid arthritis in Japanese.	Interstitial lung diseases in rheumatoid arthritis	358 Japanese ancestry cases, 4,550 Japanese ancestry controls	NA	7p21.3	RPA3, UMAD1	rs12702634-C	0.081	2E-8		2.04	[1.59-2.60]	Illumina [5934489] (imputed)	N
643	chr7	7724945	7724945	rs34968724	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental extreme longevity (95 years and older)	1,339 middle-aged British cases, 40,934 middle-aged British controls	NA	7p21.3	NR	rs34968724-?	NR	3E-6		0.004204	[0.0024-0.006] unit increase	Affymetrix [9658292] (imputed)	N
644	chr7	7779323	7779324	rs10486187	24556642	Zeng Z	2014-02-18	Caries Res	Genome-wide association study of primary dentition pit-and-fissure and smooth surface caries.	Smooth-surface caries	1006 European ancestry individuals	NA	7p21.3	LOC729852	rs10486187-T	0.0897	5E-6		1.886	[NR] unit decrease	Illumina [1216189] (imputed)	N
644	chr7	7800686	7800687	rs17137412	21221126	Shen Y	2011-01-11	Pharmacogenomics J	Genome-wide association study of serious blistering skin rash caused by drugs.	Drug-induced Stevens-Johnson syndrome or toxic epidermal necrolysis (SJS/TEN)	up to 72 European ancestry cases, up to 4,251 European ancestry controls	NA	7p21.3	RPA3	rs17137412-?	NR	1E-8	(NW-EA)	4.0	[2.5-6.2]	Illumina [up to 1000000]	N
644	chr7	7803159	7803160	rs7811258	33685280	Nishizawa D	2021-01-01	Mol Pain	Genome-wide association study identifies candidate loci associated with chronic pain and postherpetic neuralgia.	Response to opiods (pain relief efficacy)	50 Japanese ancestry individuals	NA	7p21.3	NR	rs7811258-?	NR	2E-6				Illumina [445723]	N
644	chr7	7826853	7826854	rs17557971	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	7p21.3	FLJ20323	rs17557971-?	NR	7E-6	(TAG 52:3)	0.3526852	[0.2-0.51] unit decrease	Affymetrix [at least 2500000] (imputed)	N
644	chr7	7844954	7844955	rs7793050	31372216	Haaland OA	2019-06-24	F1000Res	A genome-wide scan of cleft lip triads identifies parent-of-origin interaction effects between ANK3 and maternal smoking, and between ARHGEF10 and alcohol consumption.	Cleft lip with or without cleft palate x maternal periconceptional vitamin use interaction (parent of origin effect)	825 European ancestry case-parent duos or trios, 1,024 Asian ancestry case-parent duos or trios, 59 case-parent duos or trios	NA	7p21.3	RPA3-AS1	rs7793050-?	NR	4E-6	(EA)	3.94	[2.20-7.05]	NR [341191]	N
644	chr7	7848911	7848912	rs10259199	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	7p21.3	LOC729852	rs10259199-G	0.091	2E-6	(Height change )	0.04	[NR] cm/y increase	Illumina [899892]	N
644	chr7	7854581	7854582	rs12668855	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	7p21.3	RPA3-AS1	rs12668855-T	0.198256	8E-10		0.017109007	[0.012-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
644	chr7	7859201	7859202	rs2194656	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Melanoma	3,122 White British ancestry cases, 271,708 White British ancestry controls	NA	7p21.3		rs2194656-?	NR	8E-6		1.12635	[1.07-1.18]	NR [674885]	N
645	chr7	7864750	7864751	rs12702661	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	7p21.3	LOC729852	rs12702661-A	0.273	2E-6	(Total energy expenditure RQ)	0.04	[NR] unit increase	Illumina [899892]	N
645	chr7	7864750	7864751	rs12702661	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	7p21.3	LOC729852	rs12702661-A	0.273	2E-6	(Fat oxidation )	0.04	[NR] %NPEE increase	Illumina [899892]	N
645	chr7	7866367	7866368	rs17138331	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1b levels	8,243 Finnish ancestry individuals	NA	7p21.3	NR	rs17138331-G	NR	2E-6		0.1391	[0.081-0.197] SD units increase	NR [10700000] (imputed)	N
645	chr7	7868739	7868740	rs35795180	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		UMAD1	rs35795180-?	NR	1E-9	(female)	1.64719	[NR] unit decrease	Affymetrix [NR] (imputed)	N
645	chr7	7883322	7883323	rs7780564	21216879	Kaplan RC	2011-01-07	Hum Mol Genet	A genome-wide association study identifies novel loci associated with circulating IGF-I and IGFBP-3.	Insulin-like growth factors	10,280 European ancestry individuals	NA	7p21.3	RPA3	rs7780564-C	0.55	4E-7	(IGF-I)			Affymetrix, Illumina [~ 2500000] (imputed)	N
645	chr7	7899964	7899965	rs17495987	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	7p21.3	NR	rs17495987-?	NR	8E-6		0.0429	[0.024-0.062] unit decrease	Illumina [at least 560000] (imputed)	N
645	chr7	7904396	7904397	rs7801593	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Coffee consumption	335,909 European ancestry individuals	39,924 European ancestry individuals	7p21.3	UMAD1	rs7801593-A	0.7541	2E-6		0.0081	[0.0048-0.0114] unit increase	Affymetrix [~ 7740000] (imputed)	N
645	chr7	7906723	7906724	rs6463739	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Small cell lung carcinoma	2,664 European ancestry cases,  21,444 European ancestry controls	NA	7p21.3	UMAD1	rs6463739-G	0.596687126	2E-6		1.155505	[1.09-1.23]	Illumina [10439017] (imputed)	N
645	chr7	7922473	7922474	rs60146981	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	7p21.3	UMAD1, RP11-505D17.1	rs60146981-C	0.0033	2E-6		1.527	[0.89-2.16] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
645	chr7	7930373	7930374	rs150322232	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Hepatocyte growth factor levels	8,292 Finnish ancestry individuals	NA	7p21.3	NR	rs150322232-G		5E-6		0.2104	[0.12-0.3] SD units decrease	NR [10700000] (imputed)	N
645	chr7	7938595	7938596	rs10486201	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	7p21.3	LOC729852	rs10486201-A	0.1	6E-6	(Light activity )	0.03	[NR] min/d increase	Illumina [899892]	N
645	chr7	7957577	7957578	rs6463748	29860282	Scelsi MA	2018-05-30	Brain	Genetic study of multimodal imaging Alzheimer's disease progression score implicates novel loci.	Hippocampal volume	926 European ancestry individuals	NA	7p21.3	RPA3-AS1	rs6463748-?		7E-6	(corrected for APOE4 status)	0.12	[NR] unit increase	Illumina [5137218] (imputed)	N
646	chr7	8003016	8003017	rs929511	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	7p21.3		rs929511-T	0.1254	4E-14		0.016	[0.012-0.02] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
646	chr7	8005173	8005174	rs12531825	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	7p21.3	RPA3-AS1, AC006042.7	rs12531825-A	0.1189	2E-9		0.018386783	[0.012-0.024] unit decrease	Affymetrix [up to 18485882] (imputed)	N
646	chr7	8007508	8007509	rs37972	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	7p21.3	RPA3-AS1, AC006042.7	rs37972-C	0.4371	2E-11		0.013753382	[0.0098-0.0177] unit increase	Affymetrix [up to 18485882] (imputed)	N
646	chr7	8010385	8010386	rs37974	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	7p21.3		rs37974-G	NR	3E-30		0.0149	[0.012-0.017] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
646	chr7	8010385	8010386	rs37974	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	7p21.3	RPA3-AS1, GLCCI1	rs37974-G	NR	4E-8		0.0170727	[0.011-0.023] unit increase	Affymetrix [321114] (imputed)	N
646	chr7	8010633	8010634	rs2240857	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	7p21.3		rs2240857-G	0.235848	1E-10		0.0153581	[0.011-0.02] unit decrease	Illumina [13479295] (imputed)	N
646	chr7	8010633	8010634	rs2240857	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	7p21.3	GLCCI1	rs2240857-?	NR	4E-13		0.02460539	[0.018-0.031] unit decrease	Illumina [27896057] (imputed)	N
646	chr7	8014956	8014957	rs37976	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income	286,301 British ancestry individuals	NA	7p21.3	RPA3-AS1, GLCCI1	rs37976-T	NR	3E-9		0.011976	[0.008-0.0159] unit increase	Affymetrix [18485882] (imputed)	N
646	chr7	8016601	8016602	rs73049252	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	7p21.3	RPA3-AS1, GLCCI1	rs73049252-A	0.058571	1E-13		0.035284836	[0.026-0.045] unit decrease	Affymetrix [93095623] (imputed)	N
646	chr7	8016601	8016602	rs73049252	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	7p21.3	RPA3-AS1, GLCCI1	rs73049252-A	0.05857	2E-20		0.04378255	[0.035-0.053] unit decrease	Affymetrix [93095623] (imputed)	N
646	chr7	8018179	8018180	rs7804306	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	7p21.3	GLCCI1, RPA3-AS1	rs7804306-A	0.0606	4E-9		0.04459301	[0.03-0.059] unit decrease	Affymetrix [~ 2500000] (imputed)	N
646	chr7	8018179	8018180	rs7804306	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	7p21.3	GLCCI1, RPA3-AS1	rs7804306-A	0.0605	2E-9		0.04521436	[0.03-0.06] unit decrease	Affymetrix [~ 2500000] (imputed)	N
646	chr7	8018179	8018180	rs7804306	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	7p21.3	GLCCI1, RPA3-AS1	rs7804306-A	0.0606	3E-9		0.04498851	[0.03-0.06] unit decrease	Affymetrix [~ 2500000] (imputed)	N
646	chr7	8020655	8020656	rs56073406	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	7p21.3	AC006042.8	rs56073406-G	0.060286	2E-13		0.03403391	[0.025-0.043] unit increase	Affymetrix [93095623] (imputed)	N
646	chr7	8022015	8022016	rs73049276	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	7p21.3	RPA3-AS1, GLCCI1	rs73049276-A	0.05848	3E-13		0.03437755	[0.025-0.044] unit decrease	Affymetrix [93095623] (imputed)	N
646	chr7	8022015	8022016	rs73049276	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	7p21.3	NR	rs73049276-A	0.058516	5E-22		0.03953	[0.032-0.048] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
646	chr7	8024822	8024823	rs113537684	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p21.3	NR	rs113537684-T	0.0553964	6E-20				Affymetrix, Illumina [23114412] (imputed)	N
646	chr7	8024839	8024840	rs60466842	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	7p21.3	RPA3-AS1, GLCCI1	rs60466842-A	0.0869910000000001	9E-10		0.024055788	[0.016-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
646	chr7	8024839	8024840	rs60466842	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p21.3	NR	rs60466842-A	0.119365	1E-16				Affymetrix, Illumina [24649327] (imputed)	N
646	chr7	8024839	8024840	rs60466842	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	7p21.3	NR	rs60466842-A	0.087587	1E-19		0.029716	[0.023-0.036] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
646	chr7	8024839	8024840	rs60466842	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	7p21.3		rs60466842-?	NR	6E-13				NR [~ 8900000] (imputed)	N
646	chr7	8035496	8035497	rs145044782	28753643	Yeo A	2017-07-28	PLoS One	Pharmacogenetic meta-analysis of baseline risk factors, pharmacodynamic, efficacy and tolerability endpoints from two large global cardiovascular outcomes trials for darapladib.	Moderate or severe diarrhoea in darapladib-treated cardiovascular disease (time to event)	212 European ancestry cases	NA	7p21.3	AC006465.3, GLCCI1	rs145044782-A	0.0062	3E-8		10.88	[4.67-25.38]	Affymetrix, Illumina [9334585] (imputed)	N
646	chr7	8042196	8042197	rs38008	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	7p21.3	RPA3-AS1, GLCCI1	rs38008-C	NR	2E-10		0.0196429	[0.014-0.026] unit decrease	Affymetrix [323123] (imputed)	N
646	chr7	8056075	8056076	rs6968802	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	7p21.3	GLCCI1	rs6968802-G	0.0976	9E-10		0.03694504	[0.025-0.049] unit decrease	Affymetrix [~ 2500000] (imputed)	N
646	chr7	8075386	8075387	rs111304183	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	7p21.3	NR	rs111304183-?	NR	5E-6		0.1623	[0.093-0.232] unit decrease	Illumina [at least 560000] (imputed)	N
646	chr7	8076698	8076699	rs73050959	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p21.3	NR	rs73050959-A	0.0562835	2E-16				Affymetrix, Illumina [19905671] (imputed)	N
646	chr7	8091875	8091876	rs17568389	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	7p21.3	GLCCI1	rs17568389-T	NR	2E-9		0.0169021	[0.011-0.022] unit decrease	Affymetrix [321016] (imputed)	N
646	chr7	8091875	8091876	rs17568389	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	7p21.3	NR	rs17568389-?		9E-13		0.0154814	[0.011-0.02] unit increase	Affymetrix [19400418] (imputed)	N
646	chr7	8091875	8091876	rs17568389	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	7p21.3		rs17568389-?	NR	8E-9				NR [~ 8900000] (imputed)	N
646	chr7	8091875	8091876	rs17568389	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	7p21.3	Intergenic	rs17568389-A	0.5144	1E-14	(MTAG)	0.0127	[0.0096-0.0158] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
646	chr7	8091875	8091876	rs17568389	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	7p21.3		rs17568389-A	0.5087	2E-19		0.0127	[0.01-0.0154] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
646	chr7	8091875	8091876	rs17568389	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	7p21.3	Intergenic	rs17568389-A	0.5087	3E-21	(MTAG)	0.0124	[0.0099-0.0149] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
646	chr7	8091875	8091876	rs17568389	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	7p21.3	Intergenic	rs17568389-A	0.5141	5E-11	(MTAG)	0.015	[0.01-0.02] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
646	chr7	8101038	8101039	rs12702693	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	7p21.3	GLCCI1	rs12702693-T	0.4542	7E-20		0.0173	[0.014-0.021] unit increase	Affymetrix [18391927] (imputed)	N
646	chr7	8101147	8101148	rs117620902	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	349,856 European ancestry individuals, 91,908 East Asian ancestry individuals	NA	7p21.3		rs117620902-G	NR	4E-8		0.0268	[0.017-0.036] unit decrease	Affymetrix, Illumina [20529536] (imputed)	N
646	chr7	8107921	8107922	rs56195338	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	7p21.3		rs56195338-A	NR	8E-11		0.0332	[0.023-0.043] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
646	chr7	8107921	8107922	rs56195338	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	7p21.3		rs56195338-A	NR	2E-14		0.0391	[0.029-0.049] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
646	chr7	8107921	8107922	rs56195338	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	7p21.3		rs56195338-G	0.943	2E-12				Affymetrix [10369434] (imputed)	N
646	chr7	8107921	8107922	rs56195338	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	7p21.3	GLCCI1	rs56195338-A	0.057638	5E-17		0.03981317	[0.031-0.049] unit decrease	Affymetrix [93095623] (imputed)	N
646	chr7	8107921	8107922	rs56195338	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	7p21.3	GLCCI1	rs56195338-A	0.057712	1E-19		0.043236952	[0.034-0.053] unit increase	Affymetrix [93095623] (imputed)	N
646	chr7	8107921	8107922	rs56195338	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p21.3	NR	rs56195338-A	0.0558068	3E-10				Affymetrix, Illumina [19872809] (imputed)	N
646	chr7	8107921	8107922	rs56195338	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	7p21.3	NR	rs56195338-A	0.057715	2E-12		0.030068	[0.022-0.038] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
646	chr7	8107921	8107922	rs56195338	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	7p21.3		rs56195338-?	NR	7E-10				NR [~ 8900000] (imputed)	N
646	chr7	8108635	8108636	rs6950655	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	7p21.3		rs6950655-A	0.12566	5E-6		0.046862	[0.027-0.067] unit increase	Affymetrix [15580782] (imputed)	N
646	chr7	8109521	8109522	rs4725065	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	7p21.3	GLCCI1	rs4725065-G	0.4869	1E-14		0.015549308	[0.012-0.02] unit increase	Affymetrix [up to 18485882] (imputed)	N
646	chr7	8109521	8109522	rs4725065	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	7p21.3	NR	rs4725065-A	NR	2E-9		6.042	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
646	chr7	8109521	8109522	rs4725065	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	7p21.3	GLCCI1	rs4725065-A	NR	1E-9		0.018465878	[0.013-0.024] unit decrease	Affymetrix [NR]	N
646	chr7	8109521	8109522	rs4725065	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	7p21.3	GLCCI1	rs4725065-A	0.4884	8E-6		0.0286	[0.016-0.041] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
646	chr7	8110474	8110475	rs10253861	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7p21.3		rs10253861-?	NR	3E-40				NR [~ 8900000] (imputed)	N
646	chr7	8118914	8118915	rs12537870	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	7p21.3	GLCCI1	rs12537870-?	NR	4E-11		0.643	[0.44-0.84] unit decrease	Affymetrix [11100000] (imputed)	N
646	chr7	8120470	8120471	rs116973462	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	7p21.3	GLCCI1	rs116973462-T	0.044441	6E-13		0.04060032	[0.03-0.052] unit decrease	Affymetrix [93095623] (imputed)	N
647	chr7	8132251	8132252	rs4725069	32663566	Tashjian RZ	2020-07-11	J Shoulder Elbow Surg	Genetic Variants Associated With Rotator Cuff Tearing Utilizing Multiple Population-Based Genetic Resources.	Rotator cuff injury	5,701 European ancestry cases, 406,310 European ancestry controls	NA	7p21.3		rs4725069-T	0.30	7E-9		0.88	[0.85-0.92]	Affymetrix [17136336] (imputed)	N
647	chr7	8134293	8134294	rs6952006	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	7p21.3		rs6952006-T	0.8489	4E-8		40.25448	z score increase	NR [6814003]	N
647	chr7	8134293	8134294	rs6952006	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	7p21.3	GLCCI1	rs6952006-T	0.159	2E-12		0.018958662	[0.014-0.024] unit increase	Affymetrix [up to 18485882] (imputed)	N
647	chr7	8134293	8134294	rs6952006	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	7p21.3	GLCCI1	rs6952006-?	NR	2E-8		0.015582459	[0.01-0.021] unit increase	NR [7306098]	N
647	chr7	8134293	8134294	rs6952006	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	7p21.3	NR	rs6952006-?	NR	9E-6		4.441	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
647	chr7	8136320	8136321	rs10282647	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	7p21.3	GLCCI1	rs10282647-T	0.8949	3E-6		0.0503	[0.029-0.071] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
647	chr7	8142926	8142927	rs7791362	24684796	Cox AJ	2014-03-11	Neurobiol Aging	Heritability and genetic association analysis of cognition in the Diabetes Heart Study.	Cognitive function	423 type 2 diabetes cases and 127 unaffected siblings from 257 families	NA	7p21.3	GLCCI1, ICA1	rs7791362-C	0.201	4E-6	(Semantic Fluency)	2.7807	[1.62-3.94] unit decrease	Affymetrix [> 371951] (imputed)	N
647	chr7	8152066	8152067	rs59072263	23836780	Blue Mountains Eye Study (BMES)	2013-07-07	Hum Mol Genet	Genome-wide association study of intraocular pressure identifies the GLCCI1/ICA1 region as a glaucoma susceptibility locus.	Intraocular pressure	2,175 European ancestry individuals	4,866 European ancestry individuals	7p21.3	GLCCI1, ICA1	rs59072263-G	0.88	1E-8		0.45	[0.29-0.61] unit increase	Illumina [6235970]	N
647	chr7	8157886	8157887	rs6463768	23934736	Yu B	2013-08-11	Genet Epidemiol	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels (Pyroglutamine)	1,260 African American individuals	NA	7p21.3	ICA1	rs6463768-C		1E-6		0.19	[0.11-0.27] unit increase	Affymetrix [~ 2500000] (imputed)	N
647	chr7	8158582	8158583	rs56314523	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	7p21.3	ICA1, AC006042.6, GLCCI1	rs56314523-A	NR	6E-6	(sleep duration)	0.2393	[0.14-0.34] unit decrease	Affymetrix [7141204] (imputed)	N
647	chr7	8175786	8175787	rs6945305	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	7p21.3	ICA1	rs6945305-?	NR	1E-6		1.2	[1.10-1.30]	Illumina [at least 5000000] (imputed)	N
647	chr7	8177396	8177397	rs17143586	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	7p21.3	ICA1	rs17143586-A	0.022	1E-6	(IL6 )	0.03	[NR] pg/mL increase	Illumina [899892]	N
647	chr7	8179912	8179913	rs6943336	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7p21.3	NR	rs6943336-A	0.02091	1E-8	(IGHG2)	1.33	NR unit increase	Illumina [1671387] (imputed)	N
647	chr7	8212831	8212832	rs192691744	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	7p21.3	NR	rs192691744-?	NR	5E-6		0.4202	[0.24-0.6] unit decrease	Illumina [at least 560000] (imputed)	N
647	chr7	8251521	8251522	rs3779364	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	7p21.3		rs3779364-C	NR	2E-8		0.0113	[0.0074-0.0152] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
648	chr7	8270551	8270552	rs78897311	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Treatment or medication use - peppermint oil product (UKB data field 20003_1140865414)	222 European ancestry cases, 456,054 European ancestry controls	NA	7p21.3		rs78897311-G	0.001242	3E-9		15.24	[10.21-20.27] unit increase	NR [11842647] (imputed)	N
649	chr7	8434981	8434982	rs1009115	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	7p21.3	Intergenic	rs1009115-C	0.932	3E-6	(AA)	0.15	NR unit increase	Illumina [NR] (imputed)	N
649	chr7	8450911	8450912	rs75890985	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	7p21.3	Intergenic	rs75890985-C	0.954	1E-6	(AA)	0.039	unit increase	Illumina [NR] (imputed)	N
649	chr7	8450911	8450912	rs75890985	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	7p21.3	Intergenic	rs75890985-C	0.954	1E-6	(AA)	0.199	NR unit increase	Illumina [NR] (imputed)	N
649	chr7	8451735	8451736	rs111751834	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	7p21.3	Intergenic	rs111751834-G	0.954	2E-6	(AA)	0.039	unit increase	Illumina [NR] (imputed)	N
649	chr7	8451735	8451736	rs111751834	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	7p21.3	Intergenic	rs111751834-G	0.954	1E-6	(AA)	0.199	NR unit increase	Illumina [NR] (imputed)	N
649	chr7	8451922	8451923	rs80328607	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	7p21.3	Intergenic	rs80328607-T	0.954	2E-6	(AA)	0.039	unit increase	Illumina [NR] (imputed)	N
649	chr7	8451922	8451923	rs80328607	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	7p21.3	Intergenic	rs80328607-T	0.954	1E-6	(AA)	0.198	NR unit increase	Illumina [NR] (imputed)	N
649	chr7	8476786	8476787	rs6463808	24847101	Rudkowska I	2014-05-19	J Lipid Res	Genome-wide association study of the plasma triglyceride response to an n-3 polyunsaturated fatty acid supplementation.	Response to long-chain n-3 polyunsaturated fatty acid supplementation (change in triglyceride levels)	81 responder individuals, 60 non-responder individuals	NA	7p21.3	NXPH1	rs6463808-A	0.09	3E-6		4.53		Illumina [2668805]	N
649	chr7	8482182	8482183	rs112424975	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		NXPH1	rs112424975-?	NR	5E-8		2.16563	[NR] unit increase	Affymetrix [NR] (imputed)	N
650	chr7	8552613	8552614	rs765855	23544013	Couch FJ	2013-03-27	PLoS Genet	Genome-wide association study in BRCA1 mutation carriers identifies novel loci associated with breast and ovarian cancer risk.	Breast Cancer in BRCA1 mutation carriers	1,426 European ancestry cases, 1,301 European ancestry controls	6,031 European ancestry cases, 5,933 European ancestry controls	7p21.3	NR	rs765855-?		4E-6				Illumina [2568349] (imputed)	N
650	chr7	8560453	8560454	rs16873715	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	7p21.3		rs16873715-A	0.7564	4E-8		0.015	[0.0091-0.0209] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
650	chr7	8567346	8567347	rs17150569	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 6, height of vermillion lower lip)	2,187 European ancestry individuals	NA	7p21.3	NR	rs17150569-T	0.009629	1E-6		0.7558	[0.44-1.07] unit decrease	Illumina [10677593] (imputed)	N
650	chr7	8642353	8642354	rs10245124	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	7p21.3	NXPH1	rs10245124-G	0.177	8E-6	(INS )	0.03	[NR] uU/mL increase	Illumina [899892]	N
650	chr7	8642353	8642354	rs10245124	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	7p21.3	NXPH1	rs10245124-G	0.177	8E-6	(HOMA-IR)	0.03	[NR] unit increase	Illumina [899892]	N
651	chr7	8701706	8701707	rs4236412	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	7p21.3	NA	rs4236412-T		2E-8		0.012331	[0.008-0.0166] unit increase	Illumina [13288253] (imputed)	N
651	chr7	8718079	8718080	rs2349775	18762592	van den Oord EJ	2008-09-01	Arch Gen Psychiatry	Genomewide association analysis followed by a replication study implicates a novel candidate gene for neuroticism.	Neuroticism	1,227 European ancestry individuals	1,880 European ancestry individuals	7p21.3	NXPH1	rs2349775-?	NR	7E-6				Affymetrix [420287]	N
652	chr7	8795455	8795456	rs10239719	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Superior temporal gyrus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	7p21.3	NR	rs10239719-?		2E-6				Illumina [4322238] (imputed)	N
652	chr7	8796377	8796378	rs10486254	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Total grey matter volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	7p21.3	NR	rs10486254-?		3E-6				Illumina [4322238] (imputed)	N
652	chr7	8796377	8796378	rs10486254	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	7p21.3	NR	rs10486254-?		3E-6				Illumina [4322238] (imputed)	N
652	chr7	8801941	8801942	rs139079670	33407418	Jonsson A	2021-01-06	BMC Med Genomics	Genome-wide association study of circulating levels of glucagon during an oral glucose tolerance test.	Glucagon levels in response to oral glucose tolerance test (30 minutes)	553 European ancestry individuals, 1,346 individuals	NA	7p21.3	NR	rs139079670-A	0.0251	9E-7		0.5799	[0.35-0.81] unit decrease	Illumina [NR] (imputed)	N
652	chr7	8838716	8838717	rs6463843	20100581	Shen L	2010-01-22	Neuroimage	Whole genome association study of brain-wide imaging phenotypes for identifying quantitative trait loci in MCI and AD: A study of the ADNI cohort.	Brain imaging	175 European ancestry Alzheimer cases, 354 European ancestry amnestic mild cognitive impairment cases, 204 European ancestry controls	NA	7p21.3	NXPH1	rs6463843-?	NR	1E-6	(multiple phenotypes)			Illumina [530992]	N
652	chr7	8838716	8838717	rs6463843	20100581	Shen L	2010-01-22	Neuroimage	Whole genome association study of brain-wide imaging phenotypes for identifying quantitative trait loci in MCI and AD: A study of the ADNI cohort.	Brain imaging	175 European ancestry Alzheimer cases, 354 European ancestry amnestic mild cognitive impairment cases, 204 European ancestry controls	NA	7p21.3	NXPH1	rs6463843-?	NR	1E-6	(grey matter density of the right hippocampus)			Illumina [530992]	N
652	chr7	8854717	8854718	rs10258708	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip	15 Asian ancestry cases, 13 European ancestry cases, 15 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	7p21.3	NR	rs10258708-?	NR	1E-6		3.47	[2.7-4.45]	Illumina [539000] (imputed)	N
653	chr7	8939504	8939505	rs11770269	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Paracentral lobule volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	7p21.3	NR	rs11770269-?		4E-6				Illumina [4322238] (imputed)	N
653	chr7	8959372	8959373	rs10247578	32699080	Brhane Y	2020-07-22	Cancer Epidemiol Biomarkers Prev	Genetic determinants of lung cancer prognosis in never smokers: A pooled analysis in the International Lung Cancer Consortium.	Lung adenocarcinoma (survival time) in never smokers	1,065 European ancestry individuals	871 Japanese ancestry individuals	7p21.3	Intergenic	rs10247578-A	NR	8E-8	(EA)	1.38	[1.23-1.55]	Illumina [629283] (imputed)	N
653	chr7	8960862	8960863	rs13247936	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	7p21.3	NR	rs13247936-G	NR	1E-6		1.0526316	[NR]	Illumina [7158791] (imputed)	N
653	chr7	8998975	8998976	rs17157663	19197348	Lowe JK	2009-02-06	PLoS Genet	Genome-wide association studies in an isolated founder population from the Pacific Island of Kosrae.	Quantitative traits	2,906 Kosraen individuals	NA	7p21.3	intergenic	rs17157663-A	0.32	9E-6	(TC)	0.18	[NR] mg/dL decrease	Affymetrix [408775]	N
654	chr7	9055349	9055350	rs117875254	33106475	Li QS	2020-10-26	Transl Psychiatry	Genome-wide association studies of antidepressant class response and treatment-resistant depression.	Response to serotonin-norepinephrine reuptake inhibitors (responders vs non-responders)	4,030 European ancestry responders, 3,049 European ancestry non-responders	NA	7p21.3	NR	rs117875254-T	NR	2E-6		0.6007	NR	Illumina [at least 560000] (imputed)	N
654	chr7	9066819	9066820	rs10952132	22890011	Frazier-Wood AC	2012-08-09	Pharmacogenet Genomics	Genome-wide association study indicates variants associated with insulin signaling and inflammation mediate lipoprotein responses to fenofibrate.	Response to fenofibrate	817 European ancestry individuals	NA	7p21.3	NXPH1	rs10952132-T	NR	7E-6	(Large LDL)	0.29	[-0.98400-1.56400] unit increase	Affymetrix [~ 2543887] (imputed)	N
654	chr7	9066819	9066820	rs10952132	22890011	Frazier-Wood AC	2012-08-09	Pharmacogenet Genomics	Genome-wide association study indicates variants associated with insulin signaling and inflammation mediate lipoprotein responses to fenofibrate.	Response to fenofibrate	817 European ancestry individuals	NA	7p21.3	NXPH1	rs10952132-T	NR	1E-6	(LDL diameter)	0.31	[-0.94440-1.56440] unit increase	Affymetrix [~ 2543887] (imputed)	N
654	chr7	9070268	9070269	rs13233490	24882193	Winham SJ	2014-04-19	J Affect Disord	Bipolar disorder with comorbid binge eating history: a genome-wide association study implicates APOB.	Binge eating behaviour and bipolar disorder	206 European ancestry cases with binge eating behavior, 723 European ancestry cases without binge eating behavior, 1,034 European ancestry controls	70 European ancestry cases with binge eating behavior, 758 European ancestry cases without binge eating behavior, 832 European ancestry controls	7p21.3	PER4	rs13233490-?	NR	4E-6		4.89	[NR]	Affymetrix [8466825] (imputed)	N
654	chr7	9124934	9124935	rs1859504	32131869	Arbeeva L	2020-03-04	J Foot Ankle Res	Genome-wide meta-analysis identified novel variant associated with hallux valgus in Caucasians.	Hallux valgus	609 European ancestry male cases, 1,666 European ancestry male controls	NA	7p21.3	RP4-668E10.4	rs1859504-C	0.32	1E-6		1.4705882	[1.27-1.72]	Affymetrix, Illumina [up to 7729175] (imputed)	N
654	chr7	9133778	9133779	rs117555423	31598132	Donati G	2019-06-30	Mind Brain Educ	Genome-Wide Association Study of Latent Cognitive Measures in Adolescence: Genetic Overlap With Intelligence and Education.	Working memory	4,611 European ancestry adolescents	NA	7p21.3	NXPH1	rs117555423-?	NR	8E-6		0.331	[0.19-0.47] unit decrease	Illumina [6319684] (imputed)	N
654	chr7	9146716	9146717	rs11978878	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Longevity	up to 482,000 European ancestry individuals	NA	7p21.3	NR	rs11978878-G	NR	2E-6		0.009668	[0.0057-0.0137] unit increase	Illumina [~ 540852]	N
654	chr7	9147961	9147962	rs78701439	33841421	Li J	2021-03-25	Front Immunol	Variants at the MHC Region Associate With Susceptibility to <i>Clostridioides difficile</i> Infection: A Genome-Wide Association Study Using Comprehensive Electronic Health Records.	Clostridioides difficle infection in antibiotics-users	587 European ancestry cases, 3,166 European ancestry controls	NA	7p21.3	NR	rs78701439-A	0.017	5E-7		2.55	[1.86-3.39]	Illumina [64973696] (imputed)	N
655	chr7	9189540	9189541	rs1371737	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	7p21.3	NXPH1	rs1371737-C	0.336	7E-6	(Diet carbohydrate )	0.04	[NR] %energy increase	Illumina [899892]	N
655	chr7	9201840	9201841	rs418355	31586183	Niazi Y	2019-10-04	Mutagenesis	Distinct pathways associated with chromosomal aberration frequency in a cohort exposed to genotoxic compounds compared to general population.	High chromosomal aberration frequency (total)	255 European and unknown ancestry cases, 611 European and unknown ancestry controls	NA	7p21.3	NR	rs418355-?	NR	2E-6		1.95	[1.48-2.56]	Illumina [> 2600000] (imputed)	N
655	chr7	9266387	9266388	rs1285407	18464913	Melzer D	2008-05-09	PLoS Genet	A genome-wide association study identifies protein quantitative trait loci (pQTLs).	Protein quantitative trait loci	1,200 European ancestry individuals	up to 4,590 European ancestry individuals	7p21.3	NXPH1	rs1285407-?	0.35	1E-6	(TGF-b1)			Illumina [496032]	N
656	chr7	9323219	9323220	rs1919796	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	QRS duration in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	7p21.3	NR	rs1919796-?	NR	6E-6				Affymetrix [5486770] (imputed)	N
656	chr7	9426582	9426583	rs4725192	27195708	Scott WR	2016-05-19	PLoS One	Investigation of Genetic Variation Underlying Central Obesity amongst South Asians.	Waist-to-hip ratio adjusted for body mass index	10,318 South Asian ancestry individuals	1,922 South Asian ancestry individuals	7p21.3	NXPH1	rs4725192-T	0.81	7E-6		0.07	[0.031-0.109] unit increase	Affymetrix, Illumina, Perlegen [6571328] (imputed)	N
656	chr7	9431030	9431031	rs1986582	29266176	Inaba H	2017-12-19	Cancer	Bone mineral density in children with acute lymphoblastic leukemia.	Bone mineral density change response to combined chemotherapy in acute lymphoblastic leukemia	235 European ancestry cases, 48 African American ancestry cases, 13 cases	NA	7p21.3	intergenic	rs1986582-G	0.120	7E-6		0.629	z score decrease	Affymetrix [448281]	N
657	chr7	9447070	9447071	rs145471199	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Logical memory (delayed recall) in normal cognition	305 European ancestry cognitively normal individuals	NA	7p21.3	RPL9P19, GAPDHP68	rs145471199-T	0.02	3E-7		1.04	[0.65-1.43] unit increase	Illumina [7797256] (imputed)	N
657	chr7	9539278	9539279	rs9918508	19668339	Potkin SG	2009-08-07	PLoS One	Hippocampal atrophy as a quantitative trait in a genome-wide association study identifying novel susceptibility genes for Alzheimer's disease.	Hippocampal atrophy	162 European ancestry cases, 192 European ancestry controls, 7 African American cases, 14 African American controls, 1 Asian ancestry cases, 3 Asian ancestry controls, 2 cases	NA	7p21.3	intergenic	rs9918508-?	NR	8E-6				Illumina [516645]	N
657	chr7	9546805	9546806	rs2709062	32999390	Trajanoska K	2020-09-30	Commun Biol	Genetic basis of falling risk susceptibility in the UK Biobank Study.	Falling risk	89,076 European ancestry cases, 362,103 European ancestry controls	2,215 cases, 6289 controls	7p21.3	PER4	rs2709062-A	0.5	4E-9		1.03	[1.02-1.04]	Affymetrix [7745390] (imputed)	N
657	chr7	9550571	9550572	rs12702919	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	7p21.3	NR	rs12702919-?	NR	5E-6				Affymetrix [5486770] (imputed)	N
658	chr7	9584963	9584964	rs9648634	29538362	Jilling T	2018-03-14	Pediatr Res	Surgical necrotizing enterocolitis in extremely premature neonates is associated with genetic variations in an intergenic region of chromosome eight.	Surgical necrotising enterocolitis in extremely premature birth	20 African American cases, 6 Hispanic Caucasian cases, 4 European ancestry cases,  283 African American controls, 130 Hispanic Caucasian controls, 133 European ancestry controls,	NA	7p21.3	NR	rs9648634-?	NR	8E-6				Illumina [8270200] (imputed)	N
658	chr7	9606275	9606276	rs10272945	29495422	Xu H	2018-02-26	J Pers Med	A Genome-Wide Association Study of Idiopathic Dilated Cardiomyopathy in African Americans.	Idiopathic dilated cardiomyopathy	662 African American cases, 1,138 African American controls	NA	7p21.3	NXPH1, PER4	rs10272945-C	0.1	6E-6		1.05	[1.11-19.63]	Affymetrix [up to 27494467] (imputed)	N
658	chr7	9616979	9616980	rs17161791	25221879	Wu K	2014-09-15	Am J Respir Crit Care Med	Genome-wide interrogation of longitudinal FEV1 in children with asthma.	Pulmonary function in asthmatics	510 European ancestry	NA	7p21.3	intergenic	rs17161791-C	0.37	2E-6	(Rate of change in FEV1)	0.002	[NR] unit increase	Illumina [473680]	N
658	chr7	9621006	9621007	rs17161827	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	7p21.3	NR	rs17161827-?	NR	4E-9				Affymetrix [NR]	N
658	chr7	9644236	9644237	rs60091502	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs non-severe)	86 Finnish ancestry male severe erosion cases, 50 Finnish ancestry female severe erosion cases, 817 Finnish ancestry male non-severe erosion controls, 991 Finnish ancestry female non-severe erosion controls	NA	7p21.3	NR	rs60091502-?	NR	8E-6				Illumina [NR] (imputed)	N
658	chr7	9688108	9688109	rs4236420	25897834	Biernacka JM	2015-04-21	Transl Psychiatry	The International SSRI Pharmacogenomics Consortium (ISPC): a genome-wide association study of antidepressant treatment response.	Response to serotonin reuptake inhibitors in major depressive disorder	298 European ancestry cases, 567 Asian ancestry cases, 1529 European and other ancestry cases	NA	7p21.3	PER4	rs4236420-?	NR	4E-6	(% Change in score)	0.13	[NR] unit increase	Illumina [~ 7000000] (imputed)	N
659	chr7	9716161	9716162	rs7787594	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	7p21.3	NR	rs7787594-T	NR	4E-6	(GEE model)	0.40398	[0.23-0.58] unit decrease	NR [NR] (imputed)	N
659	chr7	9723715	9723716	rs7805053	26993346	Schott JM	2016-03-15	Alzheimers Dement	Genetic risk factors for the posterior cortical atrophy variant of Alzheimer's disease.	Posterior cortical atrophy and Alzheimer's disease	293 cases, 10,547 healthy controls	NA	7p21.3	Intergenic	rs7805053-?	NR	8E-6		1.5306224	[NR]	Illumina [~ 5900000] (imputed)	N
659	chr7	9744598	9744599	rs10273909	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7p21.3	NR	rs10273909-A	0.02439	5E-9	(GSN)	0.03614	NR unit increase	Illumina [1671387] (imputed)	N
659	chr7	9825540	9825541	rs7805022	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	7p21.3	PER4, NDUFA4	rs7805022-A	0.325627914	2E-6		1.0614822	[1.035730033-1.087874539]	Illumina [10439017] (imputed)	N
660	chr7	9860131	9860132	rs13232492	30287806	Zhou H	2018-10-04	Transl Psychiatry	Genome-wide association study identifies glutamate ionotropic receptor GRIA4 as a risk gene for comorbid nicotine dependence and major depression.	Nicotine dependence and major depression (severity of comorbidity)	3,724 African American individuals	NA	7p21.3	Intergenic	rs13232492-G	0.8885	7E-7		0.8468	[0.51-1.18] unit decrease	Illumina [9520174] (imputed)	N
660	chr7	9881062	9881063	rs6954274	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Subjective well-being	298,420 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	7p21.3	NR	rs6954274-A	0.3765	7E-7		0.015094717	[0.0091-0.0211] unit decrease	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
660	chr7	9891286	9891287	rs1514880	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	7p21.3	NXPH1	rs1514880-?	NR	8E-6	(TAG 60:12)	0.24704939	[0.14-0.36] unit increase	Affymetrix [at least 2500000] (imputed)	N
660	chr7	9922242	9922243	rs2971100	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	7p21.3	Intergenic	rs2971100-?	NR	2E-6		1.911	[NR]	Affymetrix [492217] (imputed)	N
661	chr7	10006340	10006341	rs2971030	29551738	Dong J	2018-03-15	Clin Gastroenterol Hepatol	Interactions Between Genetic Variants and Environmental Factors Affect Risk of Esophageal Adenocarcinoma and Barrett's Esophagus.	Esophageal adenocarcinoma x gastroesophageal reflux disease interaction	2,284 European ancestry cases, 2,182 European ancestry controls	NA	7p21.3	LOC340268	rs2971030-G	0.42	6E-7		1.77	[NR]	Illumina [993501]	N
662	chr7	10096654	10096655	rs10258381	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	7p21.3	AC004936.1	rs10258381-G	0.049	5E-6		0.119	[0.068-0.17] unit decrease	Affymetrix, Illumina [7374092] (imputed)	N
662	chr7	10149975	10149976	rs7778619	17903293	Benjamin EJ	2007-09-19	BMC Med Genet	Genome-wide association with select biomarker traits in the Framingham Heart Study.	Select biomarker traits	1,012 European ancestry individuals	NA	7p21.3	intergenic	rs7778619-?	NR	3E-6	(CD40L)			Affymetrix [70897]	N
662	chr7	10188335	10188336	rs7782799	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	7p21.3	NR	rs7782799-A	0.02	6E-6		0.79	[0.69-0.89]	Illumina [8468885] (imputed)	N
663	chr7	10256503	10256504	rs10276764	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	7p21.3	NR	rs10276764-T	NR	1E-6	(male)	0.1277	[0.076-0.179] unit increase	Illumina [11133794] (imputed)	N
663	chr7	10280128	10280129	rs190139255	29868224	Sallah N	2017-11-27	Glob Health Epidemiol Genom	Whole-genome association study of antibody response to Epstein-Barr virus in an African population: a pilot.	Viral capsid antigen IgG seropositivity	1,344 Ugandan ancestry cases, 218 Ugandan ancestry controls	NA	7p21.3	intergenic	rs190139255-?	0.995	1E-9		1.75	[1.32-2.56]	Illumina [~ 17000000] (imputed)	N
663	chr7	10297081	10297082	rs7808481	28628665	Sobota RS	2017-06-19	PLoS Genet	A chromosome 5q31.1 locus associates with tuberculin skin test reactivity in HIV-positive individuals from tuberculosis hyper-endemic regions in east Africa.	Resistance to Mycobacterium tuberculosis in HIV-positive individuals measured by a negative tuberculin skin test (dichotomous)	244 cases, 225 controls		7p21.3	Loc340268	rs7808481-A	0.2164	9E-6	(additive model)	2.311	[1.598-3.343]	Illumina [542585]	N
664	chr7	10364722	10364723	rs2882834	22864933	O'Donnell PH	2012-01-03	Cancer	Identification of novel germline polymorphisms governing capecitabine sensitivity.	Capecitabine sensitivity	Up to 84 East Asian ancestry lymphoblastoid cell lines, up to 164 European ancestry lymphoblastoid cell lines, up to 173 African ancestry lymphoblastoid cell lines, up to 82 African American lymphoblastoid cell lines	NA	7p21.3	intergenic	rs2882834-?	NR	1E-6				NR [~ 2000000]	N
665	chr7	10528055	10528056	rs1568775	33213513	Ibanez L	2020-11-19	Acta Neuropathol Commun	Functional genomic analyses uncover APOE-mediated regulation of brain and cerebrospinal fluid beta-amyloid levels in Parkinson disease.	Alpha synuclein levels (MTAG)	1744 European ancestry individuals	NA	7p21.3	NR	rs1568775-T	NR	1E-6		0.01861457	[0.011-0.026] unit decrease	Illumina [NR] (imputed)	N
665	chr7	10568076	10568077	rs11980749	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	7p21.3	NA	rs11980749-G		1E-11		0.0123463	[0.0088-0.0159] unit increase	Illumina [13288253] (imputed)	N
665	chr7	10572623	10572624	rs149165422	31324189	Kim W	2019-07-19	Respir Res	DSP variants may be associated with longitudinal change in quantitative emphysema.	Emphysema annual change measurement in smokers (percent low attenuation area)	4,427 European ancestry individuals, 1,158 African American individuals	NA	7p21.3	NDUFA4	rs149165422-A	0.984	8E-6	(EA)	0.38	[0.21-0.55] unit increase	Illumina [NR] (imputed)	N
666	chr7	10619636	10619637	rs190310665	28203683	Heit JA	2017-02-16	Thromb Haemost	Identification of unique venous thromboembolism-susceptibility variants in African-Americans.	Venous thromboembolism adjusted for sickle cell variant rs77121243-T	393 African American cases, 4,941 African American controls.	NR	7p21.3	LOC100287551	rs190310665-A	0.0252	9E-7		2.69	[1.813-3.993]	Affymetrix, Illumina [14074516] (imputed)	N
666	chr7	10622389	10622390	rs1119695	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of saturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	7p21.3		rs1119695-A	0.176889	3E-8		0.0299065	[0.019-0.04] unit increase	NR [11722792] (imputed)	N
666	chr7	10700896	10700897	rs73678284	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	7p21.3		rs73678284-T	NR	9E-6	(sleep latency)	0.2835	[0.16-0.41] unit decrease	Affymetrix [7141204] (imputed)	N
666	chr7	10725450	10725451	rs2189435	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fish- and plant-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	7p21.3	intergenic	rs2189435-?	NR	3E-8	(female)	0.0184525	[0.012-0.025] unit increase	Affymetrix [25921788] (imputed)	N
667	chr7	10748547	10748548	rs141226872	33381925	Buchanan VL	2020-12-30	Pediatr Obes	Genome-wide association study identifying novel variant for fasting insulin and allelic heterogeneity in known glycemic loci in Chilean adolescents: The Santiago Longitudinal Study.	Fasting glucose	543 Chilean individuals	NA	7p21.3	AC004535.2	rs141226872-G	0.01	4E-6		12.042	[6.9-17.18] unit increase	Illumina [NR] (imputed)	N
667	chr7	10767487	10767488	rs6947964	25130324	Cai DC	2014-08-29	Genes Brain Behav	A genome-wide search for quantitative trait loci affecting the cortical surface area and thickness of Heschl's gyrus.	Heschl's gyrus morphology	1,778 European ancestry individuals, 1,276 individuals	NA	7p21.3	NDUFA4, FDFT1	rs6947964-T	0.44	6E-6	(Left HG thickness)	0.034	unit increase	Affymetrix, Illumina [4103035] (imputed)	N
667	chr7	10857921	10857922	rs73289741	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7p21.3	NR	rs73289741-C	0.01394	3E-8	(MACROD1)	0.0126	NR unit decrease	Illumina [1671387] (imputed)	N
668	chr7	10945192	10945193	rs16876733	32503578	Yang DW	2020-06-05	J Transl Med	Genome-wide association study identifies genetic susceptibility loci and pathways of radiation-induced acute oral mucositis.	Response to radiotherapy in nasopharyngeal carcinoma (acute oral mucositis)	349 East Asian ancestry cases, 1,118 East Asian ancestry treated controls	NA	7p21.3	PER4, NDUFA4	rs16876733-?	NR	3E-6		1.95	[1.47-2.59]	Illumina [3968928] (imputed)	N
668	chr7	10985187	10985188	rs190073	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	7p21.3	NR	rs190073-G	0.5859	3E-8		1.0341262	[1.02-1.05]	Affymetrix, Illumina [NR] (imputed)	N
669	chr7	11022229	11022230	rs218966	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	7p21.3	NDUFA4	rs218966-?	NR	3E-7	(fum; mal; alpha keto)	0.19718562	[0.12-0.27] unit increase	Affymetrix [at least 2500000] (imputed)	N
669	chr7	11058395	11058396	rs183600932	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	7p21.3	Intergenic	rs183600932-T	NR	1E-8	(between families)	5.706	unit increase	Affymetrix [up to 15107142] (imputed)	N
670	chr7	11177346	11177347	rs56317450	30373671	Hayden LP	2018-10-29	Respir Res	Childhood asthma is associated with COPD and known asthma variants in COPDGene: a genome-wide association study.	Self-reported childhood asthma in adult smokers	385 European ancestry cases, 4979 European ancestry controls, 325 African American cases, 2342 African American controls	NA	7p21.3	PHF14	rs56317450-A	0.08	5E-7	(AA)	2.11	NR	Illumina [up to 15374350] (imputed)	N
670	chr7	11210930	11210931	rs12154393	31533690	Orlova E	2019-09-18	BMC Oral Health	Pilot GWAS of caries in African-Americans shows genetic heterogeneity.	Dental caries (decayed, missing and filled teeth)	109 African American adults	NA	7p21.3	NDUFA4, THSD7A	rs12154393-?		3E-6		3.828	[2.33-5.32] unit increase	Illumina [~ 4900000] (imputed)	N
670	chr7	11220845	11220846	rs4720945	30787463	Escala-Garcia M	2019-02-21	Br J Cancer	Genome-wide association study of germline variants and breast cancer-specific mortality.	Breast cancer specific mortality in breast cancer	7,697 European ancestry cases, 88,964 European ancestry controls	NA	7p21.3	NR	rs4720945-?	NR	7E-6		1.0825416	[1.05-1.12]	Affymetrix, Illumina [~ 10400000] (imputed)	N
670	chr7	11221311	11221312	rs73067509	33204752	Butler-Laporte G	2020-09-24	Open Forum Infect Dis	Genetic Determinants of Antibody-Mediated Immune Responses to Infectious Diseases Agents: A Genome-Wide and HLA Association Study.	Epstein-Barr virus EA-D antibody levels	7,763 White British ancestry individuals	NA	7p21.3	AC004538.3	rs73067509-C	0.892	2E-8		0.14	[0.091-0.189] unit increase	NR [25472218] (imputed)	N
670	chr7	11227941	11227942	rs12374991	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	7p21.3	Intergenic	rs12374991-T	NR	5E-7	(between families)	5.046	unit increase	Affymetrix [up to 15107142] (imputed)	N
670	chr7	11270606	11270607	rs17164067	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	7p21.3	NR	rs17164067-?		2E-8	(DCN)	0.4435	[NR] unit decrease	Illumina [NR]	N
671	chr7	11291399	11291400	rs4720952	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	7p21.3	NR	rs4720952-G	0.419614954873646	4E-7	(IGP73)	0.1566	[0.096-0.217] unit decrease	Illumina [~ 2500000] (imputed)	N
671	chr7	11291399	11291400	rs4720952	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	7p21.3	NR	rs4720952-G	0.419614749097473	7E-7	(IGP52)	0.1534	[0.093-0.214] unit decrease	Illumina [~ 2500000] (imputed)	N
671	chr7	11291399	11291400	rs4720952	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	7p21.3	NR	rs4720952-G	0.419193108861898	3E-7	(IGP12)	0.1583	[0.098-0.219] unit decrease	Illumina [~ 2500000] (imputed)	N
671	chr7	11322339	11322340	rs5006295	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	7p21.3	NR	rs5006295-?	NR	8E-6		4.465	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
671	chr7	11330026	11330027	rs17164270	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Insular cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	7p21.3	NR	rs17164270-?		6E-6				Illumina [4322238] (imputed)	N
671	chr7	11385149	11385150	rs145285408	28334935	Raffield LM	2017-05-15	Hum Mol Genet	Genome-wide association study of iron traits and relation to diabetes in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL): potential genomic intersection of iron and glucose regulation?	Iron status biomarkers (total iron binding capacity)	12,586 Hispanic/Latino individuals	NA	7p21.3	THSD7A	rs145285408-G	NR	6E-7		1.031	[0.63-1.44] unit decrease	Illumina [27700000] (imputed)	N
672	chr7	11433103	11433104	rs11983060	33190678	Ho YYW	2020-10-01	Twin Res Hum Genet	Comparison of Genome-Wide Association Scans for Quantitative and Observational Measures of Human Hair Curvature.	Hair curvature (quantitative)	2,225 European ancestry individuals	NA	7p21.3	NR	rs11983060-?		7E-6		0.012	[0.0067-0.0173] unit increase	Illumina [7533529] (imputed)	N
672	chr7	11433421	11433422	rs575224171	32663566	Tashjian RZ	2020-07-11	J Shoulder Elbow Surg	Genetic Variants Associated With Rotator Cuff Tearing Utilizing Multiple Population-Based Genetic Resources.	Rotator cuff injury	5,701 European ancestry cases, 406,310 European ancestry controls	NA	7p21.3		rs575224171-T	0.0011	5E-9		3.14	[2.1-4.60]	Affymetrix [17136336] (imputed)	N
672	chr7	11493906	11493910	rs200612978	32372009	de Las Fuentes L	2020-05-05	Mol Psychiatry	Gene-educational attainment interactions in a multi-ancestry genome-wide meta-analysis identify novel blood pressure loci.	Systolic blood pressure x educational attainment (some college) interaction (2df)	27,617 European ancestry individuals with some college education, 20,253 European ancestry individuals without college education, 8,128 African ancestry individuals with some college education, 8,537 African ancestry individuals without college education, 1,138 Asian ancestry individuals with some college education, 10,214 Asian ancestry individuals without college education, 1,869 Hispanic/Latin American individuals with some college education, 3,276 Hispanic/Latin American individuals without college education	131,584 European ancestry individuals with some college education, 110,940 European ancestry individuals without college education, 1,494 African ancestry individuals with some college education, 5,704 African ancestry individuals without college education, 2,339 Asian ancestry individuals with some college education, 8,567 Asian ancestry individuals without college education, 4,133 Hispanic individuals with some college education, 7,498 Hispanic individuals without college education	7p21.3	THSD7A	rs200612978-?		5E-8		4.94	[1.86-8.02] unit decrease	Affymetrix, Illumina [~ 18800000] (imputed)	N
672	chr7	11500371	11500372	rs118134876	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	7p21.3	AC004538.3, THSD7A	rs118134876-T	0.06035	4E-8		0.02367568	[0.015-0.032] unit decrease	Affymetrix [up to 18485882] (imputed)	N
672	chr7	11500371	11500372	rs118134876	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	7p21.3	Intergenic	rs118134876-T	0.0592	1E-8	(MTAG)	0.0217	[0.014-0.029] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
672	chr7	11500371	11500372	rs118134876	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	7p21.3	Intergenic	rs118134876-T	0.0592	9E-15	(MTAG)	0.0271	[0.02-0.034] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
672	chr7	11500371	11500372	rs118134876	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	7p21.3		rs118134876-T	0.0578	2E-13		0.0223	[0.016-0.028] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
672	chr7	11500371	11500372	rs118134876	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	7p21.3	Intergenic	rs118134876-T	0.0578	2E-16	(MTAG)	0.0232	[0.018-0.029] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
672	chr7	11500371	11500372	rs118134876	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	7p21.3	Intergenic	rs118134876-T	0.0599	2E-9	(MTAG)	0.0289	[0.019-0.038] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
672	chr7	11500371	11500372	rs118134876	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	7p21.3	NR	rs118134876-?	NR	1E-6		4.884	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
672	chr7	11512876	11512876	rs148707903	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Age at voice drop	55,871 European ancestry individuals	NA	7p21.3	THSD7A	rs148707903-?	NR	9E-7		0.471	[0.283-0.659] unit increase	Illumina [12039491]	N
673	chr7	11564384	11564385	rs10260419	30898391	Lawrenson K	2019-03-19	Gynecol Oncol	Genome-wide association studies identify susceptibility loci for epithelial ovarian cancer in east Asian women.	Epithelial ovarian cancer	3,238 East Asian ancestry cases, 4,083 East Asian ancestry controls	NA	7p21.3		rs10260419-?	NR	1E-7	(overall)	1.33		Illumina [11595112] (imputed)	N
673	chr7	11617924	11617925	rs74614630	31178898	Lin BM	2019-05-24	Front Genet	Genetics of Chronic Kidney Disease Stages Across Ancestries: The PAGE Study.	End-stage kidney disease	584 African American cases, 282 Hispanic cases, 112 East Asian cases, 96 Native Hawaiian cases, 1 American Indian cases, 30 cases, 8,429 African American controls, 15,852 Hispanic controls, 3,536 East Asian controls, 2,892 Native Hawaiian controls, 49 American Indian controls, 936 controls	NA	7p21.3	THSD7A	rs74614630-C	0.012	9E-7		2.25	[1.63-3.11]	Illumina [1438399] (imputed)	N
673	chr7	11619597	11619598	rs2189639	34624637	Zainul Abidin FN	2021-09-21	Neuroimage Clin	Glucose hypometabolism in the Auditory Pathway in Age Related Hearing Loss in the ADNI cohort.	Age related hearing loss-related regional glucose metabolism (Cochlear nucleus)	228 European ancestry cases, 587 European ancestry controls	NA	7p21.3		rs2189639-?	NR	9E-6		0.243	[0.14-0.35] unit decrease	Illumina [5082878] (imputed)	N
673	chr7	11665194	11665195	rs6955807	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	7p21.3	PHF14	rs6955807-?	NR	7E-6	(kynurenic acid)	0.98015755	[0.55-1.41] unit increase	Affymetrix [at least 2500000] (imputed)	N
674	chr7	11677451	11677452	rs2526101	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Intraocular pressure	133,492 European ancestry individuals	NA	7p21.3	THSD7A	rs2526101-A	0.55	7E-6				Affymetrix, Illumina [8002429] (imputed)	N
674	chr7	11677451	11677452	rs2526101	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Glaucoma	7,947 British ancestry cases, 119,318 British ancestry controls	NA	7p21.3	THSD7A	rs2526101-G	0.45	2E-9		1.1111112	NR	Affymetrix [at least 8002429] (imputed)	N
674	chr7	11677451	11677452	rs2526101	29891935	Choquet H	2018-06-11	Nat Commun	A multiethnic genome-wide association study of primary open-angle glaucoma identifies novel risk loci.	Glaucoma (primary open-angle)	10,523 European ancestry cases, 203,579 European ancestry controls, 411 Hispanic cases, 4,778 Hispanic controls, 463 East Asian ancestry cases, 4,907 East Asian ancestry controls, 298 African American cases, 1,549 African American controls, 204 South Asian ancestry cases, 4,916 South Asian ancestry controls, 272 African British cases, 4,831 African British controls, 144 mixed ancestry cases, 3,427 mixed ancestry controls	NA	7p21.3	THSD7A	rs2526101-G	NR	1E-10		1.0869565	[1.06-1.12]	Affymetrix [at least 665500] (imputed)	N
674	chr7	11677839	11677840	rs2526099	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glaucoma	10,411 European ancestry cases, 474,568 European ancestry controls, 8,448 East Asian ancestry cases, 168,903 East Asian ancestry controls	NA	7p21.3		rs2526099-G	NR	2E-9		0.0702	[0.047-0.093] unit increase	Affymetrix, Illumina [25844939] (imputed)	N
674	chr7	11677839	11677840	rs2526099	31816047	Boutin TS	2019-12-09	Hum Mol Genet	Insights into the genetic basis of retinal detachment.	Cataracts (operation)	21,679 British ancestry cases, 387,283 British ancestry controls	NA	7p21.3	THSD7A	rs2526099-?	0.473	4E-8		1.0551996	[1.03-1.08]	Affymetrix [NR] (imputed)	N
674	chr7	11679112	11679113	rs12699251	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	8,758 European ancestry cases, 108,815 European ancestry controls, 1,996 East Asian ancestry cases, 16,559  East Asian ancestry controls, 171 Sub-Saharan African ancestry cases, 94 Sub-Saharan African ancestry controls	NA	7p21.3	THSD7A	rs12699251-A	NR	3E-8		0.915395	[0.88-0.95]	Illumina [NR] (imputed)	N
674	chr7	11679112	11679113	rs12699251	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	23,963 European ancestry cases, 306,942 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	43,254 European ancestry cases, 1,471,118 European ancestry controls	7p21.3	THSD7A	rs12699251-A	NR	5E-12		0.0507	unit decrease	Illumina [15409056] (imputed)	N
674	chr7	11679112	11679113	rs12699251	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Glaucoma	11,018 European ancestry cases, 126,068 European ancestry controls	NA	7p21.3	THSD7A	rs12699251-A	NR	4E-12		1.1111112	[1.08-1.16]	Affymetrix [up to 40000000] (imputed)	N
674	chr7	11682721	11682722	rs1725452	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (antiglaucoma preparations and miotics)	5,215 European ancestry cases, 95,653 European ancestry controls	NA	7p21.3	THSD7A	rs1725452-C	0.42392	7E-9		0.117862016	[0.078-0.158] unit increase	Affymetrix [7288503] (imputed)	N
674	chr7	11683378	11683379	rs1635183	26423011	Wain LV	2015-09-27	Lancet Respir Med	Novel insights into the genetics of smoking behaviour, lung function, and chronic obstructive pulmonary disease (UK BiLEVE): a genetic association study in UK Biobank.	Lung function in never smokers (low FEV1 vs high FEV1)	9,745 European ancestry individuals with low FEV1 measurements, 4,902 European ancestry individuals with high FEV1 measurements	NA		THSD7A	rs1635183-C	0.243	4E-7		1.1655011	[1.1-1.24]	Affymetrix [28509962] (imputed)	N
674	chr7	11683691	11683692	rs1635182	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	7p21.3	THSD7A	rs1635182-C	0.819	2E-8		0.094	[0.061-0.127] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
674	chr7	11704537	11704538	rs36039219	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	9,179 European ancestry cases, 134,471 European ancestry controls, 1,983 East Asian ancestry cases, 13,719 East Asian ancestry controls, 127 Sub-Saharan African ancestry cases, 100 Sub-Saharan African ancestry controls	NA	7p21.3	THSD7A	rs36039219-A	NR	3E-8		1.09911	[1.07-1.13]	Illumina [NR] (imputed)	N
674	chr7	11705785	11705786	rs116864947	25820613	Warrington NM	2015-03-27	Hum Mol Genet	Genome-wide association study of blood lead shows multiple associations near ALAD.	Lead levels in blood	5,433 individuals	NA	7p21.3	THSD7A	rs116864947-T	0.983	3E-7		0.431	[0.23-0.63] unit decrease	Illumina [6391392] (imputed)	N
674	chr7	11724706	11724707	rs2354968	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7p21.3	NR	rs2354968-G	0.01045	9E-9	(UGT1A1)	0.211	NR unit increase	Illumina [1671387] (imputed)	N
674	chr7	11724706	11724707	rs2354968	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7p21.3	NR	rs2354968-G	0.01045	2E-37	(CYP3A5)	0.4212	NR unit increase	Illumina [1671387] (imputed)	N
674	chr7	11724706	11724707	rs2354968	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7p21.3	NR	rs2354968-G	0.01045	2E-31	(CYP3A4)	4.057	NR unit increase	Illumina [1671387] (imputed)	N
674	chr7	11753028	11753029	rs1526549	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	7p21.3	Intergenic	rs1526549-A	0.7204	1E-8	(MTAG)	0.0083	[0.0054-0.0112] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
674	chr7	11778974	11778975	rs17165136	29472232	Li Y	2018-02-22	Arterioscler Thromb Vasc Biol	Genome-Wide Association and Functional Studies Identify SCML4 and THSD7A as Novel Susceptibility Genes for Coronary Artery Disease.	Coronary artery disease	280 Han Chinese ancestry cases, 350 Han Chinese ancestry controls	9,764 Han Chinese ancestry cases, 11,434 Han Chinese ancestry controls	7p21.3	THSD7A	rs17165136-A	0.863	1E-25		1.28	[1.21-1.35]	Affymetrix [314806] (imputed)	N
675	chr7	11814044	11814045	rs78835388	32627186	Man-Choi Ho A	2020-07-05	Clin Pharmacol Ther	Mood Stabilizing Antiepileptic Treatment Response in Bipolar Disorder: A Genome-Wide Association Study.	Response to antiepileptic mood-stabilizing treatment in bipolar disorder	199 European ancestry cases	NA	7p21.3	THSD7A	rs78835388-G	0.021	7E-9		6.6	NR unit decrease	Illumina [7368687] (imputed)	N
675	chr7	11819476	11819477	rs13247707	29703947	Jawinski P	2018-04-27	Mol Psychiatry	Human brain arousal in the resting state: a genome-wide association study.	Resting-state electroencephalogram vigilance	1,877 European ancestry individuals	NA	7p21.3	THSD7A	rs13247707-T	0.743	1E-7	(Mean vigilance)	0.1847	[0.12-0.25] unit increase	Affymetrix [8042262] (imputed)	N
675	chr7	11871786	11871787	rs113779084	34002096	Mullins N	2021-05-17	Nat Genet	Genome-wide association study of more than 40,000 bipolar disorder cases provides new insights into the underlying biology.	Bipolar disorder	41,917 European ancestry cases, 371,549 European ancestry controls	NA	7p21.3	THSD7A	rs113779084-G	0.701	1E-13		0.92728	[0.91-0.95]	Affymetrix, Illumina [7549318] (imputed)	N
675	chr7	11871786	11871787	rs113779084	34002096	Mullins N	2021-05-17	Nat Genet	Genome-wide association study of more than 40,000 bipolar disorder cases provides new insights into the underlying biology.	Bipolar I disorder	25,060 European ancestry cases, 449,978 European ancestry controls	NA	7p21.3	NR	rs113779084-G	0.693	2E-11		0.91916	[0.89-0.94]	Affymetrix, Illumina [7549318] (imputed)	N
675	chr7	11871786	11871787	rs113779084	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	7p21.3	THSD7A	rs113779084-A	0.304	3E-9		1.07562	[1.05-1.1]	NR [9372253] (imputed)	N
675	chr7	11871786	11871787	rs113779084	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	7p21.3	NR	rs113779084-A	0.3056	3E-8		0.013503403	NR unit increase	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
675	chr7	11889491	11889492	rs74676849	29495422	Xu H	2018-02-26	J Pers Med	A Genome-Wide Association Study of Idiopathic Dilated Cardiomyopathy in African Americans.	Idiopathic dilated cardiomyopathy	662 African American cases, 1,138 African American controls	NA	7p21.3	THSD7A, TMEM106B	rs74676849-G	0.053	7E-7		2.03	[1.58-2.62]	Affymetrix [up to 27494467] (imputed)	N
675	chr7	11893274	11893275	rs12234369	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	7p21.3		rs12234369-A	0.3142	1E-8		0.0087	[0.0058-0.0116] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
675	chr7	11893274	11893275	rs12234369	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	7p21.3	Intergenic	rs12234369-A	0.3142	6E-11	(MTAG)	0.0092	[0.0065-0.0119] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
675	chr7	11895426	11895427	rs10259477	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	7p21.3	NR	rs10259477-?	NR	7E-10				Affymetrix [NR]	N
675	chr7	11896053	11896054	rs12531804	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	7p21.3	Intergenic	rs12531804-T	0.3174	2E-10	(MTAG)	0.0113	[0.0078-0.0148] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
675	chr7	11897510	11897511	rs57107575	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	7p21.3		rs57107575-T	0.312	5E-9	(conditional-joint)	0.0089	[0.006-0.0118] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
675	chr7	11907219	11907220	rs2883598	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	7p21.3	NR	rs2883598-?	NR	1E-7		5.309	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
675	chr7	11915242	11915243	rs10499395	28608620	Coleman JRI	2017-06-13	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of facial emotion recognition in children and association with polygenic risk for mental health disorders.	Facial emotion recognition (angry faces)	4,097 European ancestry individuals	NA	7p21.3	THSD7A	rs10499395-G	0.068	2E-6		4.76	z score increase	Illumina [2487351] (imputed)	N
675	chr7	11920804	11920805	rs2355125	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	7p21.3	THSD7A	rs2355125-?		4E-8				Affymetrix, Illumina [NR] (imputed)	N
676	chr7	12038934	12038935	rs142610580	33483693	Clements CC	2021-01-22	Mol Psychiatry	Genome-wide association study of patients with a severe major depressive episode treated with electroconvulsive therapy.	Major depressive episode treated with electroconvulsive therapy	2,725 European ancestry cases, 3,290 European ancestry controls	NA	7p21.3	NR	rs142610580-?	NR	4E-10		0.3866	[0.089-0.685]	Illumina [NR] (imputed)	N
676	chr7	12038934	12038935	rs142610580	33483693	Clements CC	2021-01-22	Mol Psychiatry	Genome-wide association study of patients with a severe major depressive episode treated with electroconvulsive therapy.	Major depressive disorder and major depressive episode treated with electroconvulsive therapy	1,796 European ancestry cases, 3,290 European ancestry controls	NA	7p21.3	NR	rs142610580-?	NR	6E-10		0.364	[0.045-0.683]	Illumina [NR] (imputed)	N
676	chr7	12043340	12043341	rs73051598	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-like 1 protein levels	252 European ancestry individuals	NA	7p21.3		rs73051598-T	NR	4E-6		0.59352	[0.35-0.84] unit increase	Illumina [NR] (imputed)	N
677	chr7	12059805	12059806	rs769111	22889924	Scharf JM	2012-08-14	Mol Psychiatry	Genome-wide association study of Tourette's syndrome.	Tourette syndrome	778 European ancestry cases, 4,414 European ancestry controls, 242 Ashkenazi Jewish cases, 354 Ashkenazi Jewish controls, 265 French Canadian founder cases, 196 French Canadian founder controls	211 Latin American cases, 285 Latin American controls	7p21.3	THSD7A, TMEM106B	rs769111-T	0.62	6E-6		1.23	[NR]	Illumina [484295]	N
677	chr7	12089651	12089652	rs79445594	32080354	Rasmussen ER	2020-02-21	Pharmacogenomics J	Genome-wide association study of angioedema induced by angiotensin-converting enzyme inhibitor and angiotensin receptor blocker treatment.	Angioedema in response to angiotensin-converting enzyme inhibitor and/or angiotensin receptor blocker	172 European ancestry cases, 1 case, 4,890 European ancestry controls	NA	7p21.3	NR	rs79445594-C	0.024	1E-6		3.113	[1.962-4.938]	Illumina [7585599] (imputed)	N
677	chr7	12094965	12094966	rs1035147	23648065	Low SK	2013-05-04	Cancer Sci	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (all topoisomerase inhibitors)	106 Japanese ancestry cases, 187 Japanese ancestry controls	NA	7p21.3	TMEM106B	rs1035147-T	0.877	4E-6	(Allelic model)	7.294	[2.587-20.559]	Illumina [733202]	N
677	chr7	12135190	12135191	rs11977478	31830031	Chernus JM	2019-12-12	PLoS Genet	A candidate gene analysis and GWAS for genes associated with maternal nondisjunction of chromosome 21.	Maternal nondisjunction of chromosome 21 (MI error vs MII error)	535 mothers (meiosis I error), 157 mothers (meiosis II error)	NA	7p21.3	NR	rs11977478-?		4E-6		2.1276596	[NR]	Illumina [NR] (imputed)	N
677	chr7	12144824	12144825	rs74434022	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7p21.3	NR	rs74434022-A	0.01568	3E-9	(FUCA1)	0.02721	NR unit increase	Illumina [1671387] (imputed)	N
677	chr7	12156418	12156419	rs2356054	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Johnsonella ignava abundance in stool	5,959 Finnish ancestry individuals	NA	7p21.3		rs2356054-T	0.290911	3E-8		0.0407194	[0.026-0.055] unit decrease	Illumina [7980478] (imputed)	N
677	chr7	12180756	12180757	rs117814736	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	7p21.3	Intergenic	rs117814736-C	0.998	2E-6	(AA)	0.268	unit increase	Illumina [NR] (imputed)	N
677	chr7	12180820	12180821	rs183820509	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	7p21.3	Intergenic	rs183820509-A	0.998	2E-6	(AA)	0.268	unit increase	Illumina [NR] (imputed)	N
677	chr7	12181499	12181500	rs141958207	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	7p21.3	Intergenic	rs141958207-T	0.998	2E-6	(AA)	0.268	unit increase	Illumina [NR] (imputed)	N
677	chr7	12184429	12184430	rs28671666	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Hippocampal sclerosis	310 cases, 2,576 controls	NA	7p21.3	intergenic	rs28671666-A	0.2128	3E-6		0.5396	[0.31-0.77] unit increase	Affymetrix, Illumina [NR] (imputed)	N
677	chr7	12188528	12188529	rs1595014	25778476	Jun G	2015-03-17	Mol Psychiatry	A novel Alzheimer disease locus located near the gene encoding tau protein.	Alzheimer's disease (APOE e4 interaction)	10,352 APOE e4+ cases, 9,207 APOE e4+ controls, 7,184 APOE e4- cases, 26,968 APOE e4- controls	1,250 APOE e4+ European ancestry cases, 536 APOE e4+ European ancestry controls, 718 APOE e4- European ancestry cases, 1,699 APOE e4- European ancestry controls	7p21.3	THSD7A, TMEM106B	rs1595014-T	0.72	4E-6		1.1904762	[1.11-1.28]	NR [NR]	N
678	chr7	12193431	12193432	rs114945094	23568457	Wade TD	2013-04-09	Int J Eat Disord	Genetic variants associated with disordered eating.	Anorexia nervosa	237 European ancestry female cases, 2,287 European ancestry female controls	NA	7p21.3	intergenic	rs114945094-G	0.959	4E-6		0.135	[0.078-0.192] unit decrease	Illumina [6150213] (imputed)	N
678	chr7	12198444	12198445	rs74826345	29317604	Liu D	2018-01-10	Transl Psychiatry	Beta-defensin 1, aryl hydrocarbon receptor and plasma kynurenine in major depressive disorder: metabolomics-informed genomics.	Plasma kynurenine levels in major depressive disorder	290 European ancestry individuals	NA	7p21.3	TMEM106B	rs74826345-T	0.01	4E-6		1.63	[NR] unit decrease	Illumina [~ 7500000] (imputed)	N
678	chr7	12219534	12219535	rs17594709	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	7p21.3	NR	rs17594709-G	0.283855287561302	5E-6	(IGP34)	0.1572	[0.09-0.225] unit decrease	Illumina [~ 2500000] (imputed)	N
678	chr7	12221800	12221801	rs200319458	32581322	Kakuta Y	2020-06-24	Sci Rep	An Integrated Genomic and Transcriptomic Analysis Reveals Candidates of Susceptibility Genes for Crohn's Disease in Japanese Populations.	Crohn's disease	713 Japanese ancestry cases, 2,063 Japanese ancestry controls	NA	7p21.3	TMEM106B	rs200319458-?	NR	8E-6		1.19	[1.10-1.29]	NR [7424691] (imputed)	N
678	chr7	12224707	12224708	rs10950390	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	7p21.3	TMEM106B	rs10950390-C	0.791891	1E-10		0.0151656	[0.011-0.02] unit increase	Affymetrix [NR] (imputed)	N
678	chr7	12224707	12224708	rs10950390	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	7p21.3	TMEM106B	rs10950390-C	0.791848	2E-8		0.0136725	[0.0089-0.0184] unit increase	Affymetrix [NR] (imputed)	N
678	chr7	12228201	12228202	rs148253479	33691233	Peterson RE	2021-02-18	J Psychiatr Res	Genome-wide analyses of smoking behaviors in schizophrenia: Findings from the Psychiatric Genomics Consortium.	Cigarettes smoked per day in Schizophrenia	3,370 European ancestry individuals	1,802 East Asian individuals	7p21.3	TMEM106B	rs148253479-?	NR	3E-8				NR [9500000] (imputed)	N
678	chr7	12233848	12233850	rs145666097	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	7p21.3	NR	rs145666097-T	NR	2E-9		0.016	[0.011-0.021] unit increase	Affymetrix [9000000] (imputed)	N
678	chr7	12242738	12242739	rs62435692	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	7p21.3	NR	rs62435692-T	0.264567804800436	1E-10		0.011626592	[0.0081-0.0152] unit increase	NR [NR]	N
678	chr7	12245224	12245225	rs57506017	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	7p21.3	NR	rs57506017-?	NR	2E-9		0.01519	[0.01-0.02] unit increase	Affymetrix [10847151] (imputed)	N
678	chr7	12245224	12245225	rs57506017	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	7p21.3	TMEM106B	rs57506017-A	0.70696	6E-9		5.822	z score decrease	Illumina [18485882] (imputed)	N
678	chr7	12250377	12250378	rs3807866	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Help-seeking from a GP	113,262 British ancestry cases, 219,360 British ancestry controls	NA	7p21.3	NR	rs3807866-A	0.41	5E-13		1.039	[1.03-1.05]	NR [5276842] (imputed)	N
678	chr7	12250377	12250378	rs3807866	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder	29,475 European ancestry cases, 63,482 European ancestry controls	NA	7p21.3	NR	rs3807866-A	0.398234	1E-7		1.084	[1.05-1.11]	Affymetrix [7791636] (imputed)	N
678	chr7	12250377	12250378	rs3807866	31748690	Purves KL	2019-11-20	Mol Psychiatry	A major role for common genetic variation in anxiety disorders.	Lifetime anxiety disorder	25,453 European ancestry cases, 58,113 European ancestry controls	6,524 cases, 24001 controls	7p21.3	TMEM106B	rs3807866-A	0.48	5E-8	(EA)	0.12	[NR] unit increase	Illumina [NR] (imputed)	N
678	chr7	12250401	12250402	rs3807865	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	7p21.3		rs3807865-A	NR	9E-11		0.0126	[0.0089-0.0163] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
678	chr7	12250401	12250402	rs3807865	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Major depressive disorder (MTAG)	at least 170,756 European ancestry cases, at least 329,443 European ancestry controls	NA	7p21.3	NR	rs3807865-A	0.4105	9E-12		0.02882208	[0.021-0.037] unit increase	NR [NR]	N
678	chr7	12250401	12250402	rs3807865	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	7p21.3	NR	rs3807865-A	0.4117	7E-12		0.0082	[0.0058-0.0106] unit increase	NR [7666894] (imputed)	N
678	chr7	12250572	12250573	rs3807864	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	7p21.3	NR	rs3807864-?	NR	3E-6		4.677	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
678	chr7	12252131	12252131	rs397715721	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	7p21.3		rs397715721-GT	NR	3E-9		0.0139	[0.0094-0.0184] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
678	chr7	12252539	12252540	rs6460895	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	7p21.3	NR	rs6460895-G	0.42059944051885	2E-14		0.010124448	[0.0075-0.0127] unit increase	NR [NR]	N
678	chr7	12252892	12252893	rs6460898	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	7p21.3	TMEM106B	rs6460898-A	0.58025	6E-14		0.00167583	[0.0012-0.0021] unit decrease	Affymetrix [13995440] (imputed)	N
678	chr7	12253879	12253880	rs2043539	30718901	Howard DM	2019-02-04	Nat Neurosci	Genome-wide meta-analysis of depression identifies 102 independent variants and highlights the importance of the prefrontal brain regions.	Depression	118,811 European ancestry cases, 327,427 European ancestry controls, 127,552 cases, 233,763 controls	414,055 European ancestry cases, 892,299 European ancestry controls	7p21.3	NR	rs2043539-A	0.4177	8E-24		1.022	[1.018-1.027]	NR [8098588] (imputed)	N
678	chr7	12258754	12258755	rs3823612	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms (MTAG)	955,012 individuals	NA	7p21.3	NR	rs3823612-?		5E-11				NR [520857]	N
678	chr7	12258754	12258755	rs3823612	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms	688,809 individuals	NA	7p21.3	NR	rs3823612-?		5E-11				NR [11140414]	N
678	chr7	12258754	12258755	rs3823612	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depression	688,809 European ancestry individuals	NA	7p21.3	NR	rs3823612-C	NR	5E-11		6.582	z score increase	Affymetrix [10847151] (imputed)	N
678	chr7	12261910	12261911	rs11509880	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	7p21.3	TMEM106B	rs11509880-A	0.358069	1E-6		1.04	[1.02-1.05]	NR [8126035] (imputed)	N
678	chr7	12261910	12261911	rs11509880	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	7p21.3	TMEM106B	rs11509880-?	NR	3E-8		0.0280562	[0.018-0.038] unit increase	Illumina [4804024] (imputed)	N
678	chr7	12261910	12261911	rs11509880	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Neuroticism	274,107 British ancestry individuals	NA	7p21.3	NR	rs11509880-A	0.3278	2E-10		0.01211	[0.0084-0.0159] unit increase	NR [8968716] (imputed)	N
678	chr7	12261910	12261911	rs11509880	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	7p21.3	NR	rs11509880-A	NR	6E-11		6.538	z score increase	Affymetrix [10847151] (imputed)	N
678	chr7	12261910	12261911	rs11509880	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	7p21.3	TMEM106B	rs11509880-A	0.344232	9E-11		6.48	z score increase	NR [10847151] (imputed)	N
678	chr7	12261910	12261911	rs11509880	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling tense	371,318 European ancestry individuals	NA	7p21.3	VWDE	rs11509880-A	0.344232	1E-9		6.08	z score increase	NR [10847151] (imputed)	N
678	chr7	12261910	12261911	rs11509880	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Experiencing mood swings	373,733 European ancestry individuals	NA	7p21.3	TMEM106B	rs11509880-A	0.344232	4E-11		6.6	z score increase	NR [10847151] (imputed)	N
678	chr7	12261910	12261911	rs11509880	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	7p21.3	TMEM106B	rs11509880-A	0.3612	3E-8		0.0327	[0.021-0.044] unit increase	Affymetrix [at least 7947838] (imputed)	N
678	chr7	12261910	12261911	rs11509880	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	7p21.3	TMEM106B	rs11509880-A	0.3646	3E-8		0.0367	[0.024-0.05] unit increase	NR [8041861] (imputed)	N
678	chr7	12263545	12263546	rs10950393	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Depression	at least 5,919 European ancestry cases, at least 130,691 European ancestry controls	634,037 European ancestry cases, 1,308,690 European ancestry controls	7p21.3	TMEM106B	rs10950393-T	0.4056	3E-22		0.021950157	[0.017-0.027] unit decrease	NR [9417325] (imputed)	N
678	chr7	12263545	12263546	rs10950393	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	7p21.3	NR	rs10950393-C	NR	2E-11		0.01561	[0.011-0.02] unit increase	Affymetrix [10847151] (imputed)	N
678	chr7	12263798	12263799	rs11509137	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7p21.3		rs11509137-?	NR	3E-12				NR [~ 8900000] (imputed)	N
678	chr7	12263799	12263800	rs11509153	28441426	White CC	2017-04-25	PLoS Med	Identification of genes associated with dissociation of cognitive performance and neuropathological burden: Multistep analysis of genetic, epigenetic, and transcriptional data.	Residual cognition	979 European ancestry individuals	NA	7p21.3	TMEM106B	rs11509153-A	0.41	9E-6		0.19	[NR] z score increase	Affymetrix, Illumina [~ 7000000] (imputed)	N
678	chr7	12264870	12264871	rs10950398	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	7p21.3	TMEM106B	rs10950398-A	0.3928125	6E-27	(TMEM106B, 8687_26_3)	0.2724926	[0.22-0.32] unit decrease	Illumina [> 1000000] (imputed)	N
678	chr7	12264870	12264871	rs10950398	29700475	Wray NR	2018-04-26	Nat Genet	Genome-wide association analyses identify 44 risk variants and refine the genetic architecture of major depression.	Depression	135,458 European ancestry cases, 344,901 European ancestry controls	NA	7p21.3	TMEM106B, VWDE	rs10950398-A	0.41	3E-8		1.03	[1.02-1.04]	NR [9622763] (imputed)	N
678	chr7	12267220	12267221	rs4721057	31926635	Coleman JRI	2019-11-01	Biol Psychiatry	The Genetics of the Mood Disorder Spectrum: Genome-wide Association Analyses of More Than 185,000 Cases and 439,000 Controls.	Bipolar disorder or major depressive disorder	164,933 European ancestry major depressive disorder cases, 20,352 European ancestry bipolar disorder cases, 439,741 European ancestry controls	NA	7p21.3	NR	rs4721057-G	NR	7E-11		1.0309278		NR [NR] (imputed)	N
678	chr7	12267255	12267256	rs4721058	34859065	Zhang F	2021-11-11	Front Cardiovasc Med	Shared Genetic Liability and Causal Associations Between Major Depressive Disorder and Cardiovascular Diseases.	Major depressive disorder or stroke (pleiotropy)	135,458 European ancestry MDD cases, 40,585 European ancestry stroke cases, 751,012 European ancestry controls	NA	7p21.3		rs4721058-?	NR	2E-9				NR [8243736]	N
678	chr7	12267836	12267837	rs13229988	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	7p21.3	TMEM106B	rs13229988-G	0.42	4E-9		5.87	z-score increase	Affymetrix [4311822] (imputed)	N
678	chr7	12268667	12268668	rs5011432	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Major depressive disorder (probable)	30,603 British ancestry cases, 143,916 British ancestry controls	NA	7p21.3	NR	rs5011432-C	0.4118	2E-8		0.0073	[0.0048-0.0098] unit increase	NR [7666894] (imputed)	N
678	chr7	12268757	12268758	rs5011436	34493870	Wightman DP	2021-09-07	Nat Genet	A genome-wide association study with 1,126,563 individuals identifies new risk loci for Alzheimer's disease.	Late-onset Alzheimer's disease	90,338 cases, 1,036,225 controls	NA	7p21.3		rs5011436-?	NR	3E-9				Illumina [NR] (imputed)	N
678	chr7	12268810	12268811	rs5011439	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	7p21.3		rs5011439-C	0.41	1E-9		6.06	z score increase	Affymetrix [9061022] (imputed)	N
678	chr7	12268810	12268811	rs5011439	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	7p21.3	NR	rs5011439-C	0.3824	5E-11				NR [9056863] (imputed)	N
678	chr7	12269416	12269417	rs3173615	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	7p21.3	TMEM106B	rs3173615-C	0.5296	7E-9		0.0113	[0.0076-0.015] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
678	chr7	12269416	12269417	rs3173615	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	7p21.3	TMEM106B	rs3173615-C	0.5291	2E-9		0.0117	[0.008-0.0154] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
678	chr7	12269592	12269593	rs13237518	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	7p21.3	NR	rs13237518-C	0.5858	8E-10		0.0292	[0.02-0.038] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
678	chr7	12269592	12269593	rs13237518	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	7p21.3	NR	rs13237518-C	0.5207	2E-13		0.0283	[0.021-0.036] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
678	chr7	12273151	12273152	rs14978	22952603	Hart AB	2012-08-28	PLoS One	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 10 individuals	NA	7p21.3	TMEM106B	rs14978-?	NR	7E-6	(SF3)			Affymetrix [5476100] (imputed)	N
678	chr7	12273495	12273496	rs1054169	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	7p21.3		rs1054169-?	NR	2E-15		0.0234	unit increase	NR [NR]	N
678	chr7	12279760	12279761	rs1548884	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TMEM106B	5,364 Icelandic ancestry individuals	NA	7p21.3		rs1548884-C	0.3997	1E-42		0.261449	[0.22-0.3] unit decrease	Illumina [7506463] (imputed)	N
678	chr7	12282450	12282451	rs7805419	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	7p21.3	TMEM106B	rs7805419-T	NR	1E-8		0.0099821	[0.0066-0.0134] unit increase	Affymetrix [18485882] (imputed)	N
678	chr7	12282450	12282451	rs7805419	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	7p21.3	NR	rs7805419-C	0.416096426565008	9E-13		0.0066619376	[0.0048-0.0085] unit increase	NR [NR]	N
678	chr7	12283328	12283329	rs7791726	29724592	Pottier C	2018-04-30	Lancet Neurol	Potential genetic modifiers of disease risk and age at onset in patients with frontotemporal lobar degeneration and GRN mutations: a genome-wide association study.	Frontotemporal dementia with GRN mutation	382 European ancestry cases, 1,146 European ancestry controls	67 European ancestry cases, 1,798 European ancestry controls	7p21.3	TMEM106B	rs7791726-G	0.58	2E-14		2.0	[1.67-2.38]	Illumina [7033776] (imputed)	N
678	chr7	12283328	12283329	rs7791726	29724592	Pottier C	2018-04-30	Lancet Neurol	Potential genetic modifiers of disease risk and age at onset in patients with frontotemporal lobar degeneration and GRN mutations: a genome-wide association study.	Frontotemporal dementia	382 European ancestry GRN mutation carrier cases, 1,146 European ancestry controls	67 GRN mutation carrier European ancestry cases, 143 GRN-negative European ancestry cases, 1,798 European ancestry controls	7p21.3	TMEM106B	rs7791726-G	0.58	4E-16		1.8518518	[1.59-2.17]	Illumina [7033776] (imputed)	N
678	chr7	12283786	12283787	rs1990622	28330615	Rhinn H	2017-03-18	Cell Syst	Differential Aging Analysis in Human Cerebral Cortex Identifies Variants in TMEM106B and GRN that Regulate Aging Phenotypes.	Differential aging in older adults (frontal cortex)	413 individuals	497 individuals	7p21.3	TMEM106B	rs1990622-A	NR	3E-23		6.06	NR years decrease	NR [468129]	N
678	chr7	12283786	12283787	rs1990622	28330615	Rhinn H	2017-03-18	Cell Syst	Differential Aging Analysis in Human Cerebral Cortex Identifies Variants in TMEM106B and GRN that Regulate Aging Phenotypes.	Differential aging (frontal cortex)	716 individuals	497 individuals	7p21.3	TMEM106B	rs1990622-A	NR	2E-19		4.92	NR years decrease	NR [468129]	N
678	chr7	12284007	12284008	rs1990620	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	7p21.3		rs1990620-G	NR	4E-9		0.012	[0.0081-0.0159] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
679	chr7	12391318	12391319	rs6967385	23006423	Niu N	2012-09-24	BMC Cancer	Genetic association with overall survival of taxane-treated lung cancer patients - a genome-wide association study in human lymphoblastoid cell lines followed by a clinical association study.	Response to taxane treatment (placlitaxel)	96 African American lymphoblastoid cell lines, 96 European ancestry lymphoblastoid cell lines, 96 Han Chinese ancestry lymphoblastoid cell lines	NA	7p21.3	TMEM106B	rs6967385-?	NR	6E-6				Affymetrix, Illumina [~ 1300000]	N
679	chr7	12406988	12406989	rs6460939	32912094	Jaworek T	2020-09-11	Stroke	Exome Array Analysis of Early-Onset Ischemic Stroke.	Early-onset ischemic stroke	330 African American cases, 393 European ancestry cases, 298 African American controls, 428 European ancestry controls	NA	7p21.3	VWDE	rs6460939-G	0.55	9E-6		1.41		Illumina [243497]	N
679	chr7	12412339	12412340	rs78655262	32080354	Rasmussen ER	2020-02-21	Pharmacogenomics J	Genome-wide association study of angioedema induced by angiotensin-converting enzyme inhibitor and angiotensin receptor blocker treatment.	Angioedema in response to angiotensin-converting enzyme inhibitor and/or angiotensin receptor blocker	172 European ancestry cases, 1 case, 4,890 European ancestry controls	NA	7p21.3	NR	rs78655262-G	0.025	5E-6		2.899	[1.835-4.578]	Illumina [7585599] (imputed)	N
679	chr7	12420988	12420989	rs6460942	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	7p21.3	VWDE	rs6460942-T	0.872	2E-6		0.047	[0.027-0.067] unit increase	Affymetrix [7947838] (imputed)	N
679	chr7	12449663	12449664	rs113552349	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,931 Sub-Saharan African ancestry males	NA	7p21.3		rs113552349-A	0.983643	1E-5		0.0442856	[0.024-0.065] unit decrease	Illumina [13900000] (imputed)	N
680	chr7	12575272	12575273	rs10253066	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 9, facial height related to vertical position of nasion)	2,187 European ancestry individuals	NA	7p21.3	NR	rs10253066-C	0.4679	3E-6		0.1428	[0.083-0.203] unit decrease	Illumina [10677593] (imputed)	N
681	chr7	12587946	12587947	rs2079561	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	7p21.3		rs2079561-A	NR	2E-12		0.0094	[0.0069-0.0119] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
681	chr7	12588377	12588378	rs56060724	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7p21.3		rs56060724-?	NR	5E-10				NR [~ 8900000] (imputed)	N
681	chr7	12590046	12590047	rs13243276	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA	7p21.3	NR	rs13243276-?	NR	4E-6		0.2393	[0.14-0.34] unit decrease	Illumina [at least 560000] (imputed)	N
681	chr7	12610577	12610578	rs116907627	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	7p21.3		rs116907627-T	0.034108	5E-11		0.0363912	[0.026-0.047] unit increase	Illumina [13479295] (imputed)	N
681	chr7	12610577	12610578	rs116907627	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	7p21.3	SCIN	rs116907627-?	NR	2E-11		0.052430525	[0.037-0.068] unit increase	Illumina [27896057] (imputed)	N
681	chr7	12618923	12618924	rs17166189	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	7p21.3	NR	rs17166189-?	NR	6E-7				Affymetrix [NR]	N
681	chr7	12626321	12626322	rs181972774	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1b levels	8,243 Finnish ancestry individuals	NA	7p21.3	NR	rs181972774-G	NR	5E-6		0.5285	[0.3-0.75] SD units decrease	NR [10700000] (imputed)	N
681	chr7	12653058	12653059	rs116877011	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Small cell lung carcinoma	2,664 European ancestry cases,  21,444 European ancestry controls	NA	7p21.3	SCIN	rs116877011-T	0.020399938	2E-6		1.6737633	[1.351182202-2.073357283]	Illumina [10439017] (imputed)	N
681	chr7	12695506	12695507	rs1017404	30808802	Freidin M	2019-02-26	J Med Genet	Genome-wide meta-analysis identifies genetic locus on chromosome 9 associated with Modic changes.	Modic changes	994 European ancestry cases, 835 European ancestry controls	NA	7p21.3	intergenic	rs1017404-A	0.783	4E-6		1.43	[1.23-1.66]	Illumina [5479070] (imputed)	N
681	chr7	12713069	12713070	rs10488226	23648065	Low SK	2013-05-04	Cancer Sci	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (5-fluorouracil)	177 Japanese ancestry cases, 952 Japanese ancestry controls	NA	7p21.3	LOC100505995	rs10488226-A	0.107	3E-6	(Dominant model)	2.026	[1.50-2.737]	Illumina [733202]	N
682	chr7	12734614	12734615	rs55909982	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	7p21.3		rs55909982-C	0.36	3E-9		5.91	z score increase	Affymetrix [9061022] (imputed)	N
682	chr7	12738389	12738390	rs4467834	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	7p21.3	NR	rs4467834-T	0.3266	9E-9				NR [9056863] (imputed)	N
682	chr7	12758151	12758152	rs4719328	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (hospitalized covid vs population)	613 European ancestry cases, 680,416 European ancestry controls, 140 Hispanic or Latin American cases, 94,327 Hispanic or Latin American controls, 49 Black or African American cases, 22,410 Black or African American controls	NA	7p21.3		rs4719328-?	NR	4E-6		0.2553625	[0.15-0.36] unit decrease	Illumina [9875426] (imputed)	N
682	chr7	12761040	12761041	rs7810893	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	7p21.3	NR	rs7810893-C	0.3487	4E-6	(EA)	0.0299	[0.017-0.043] unit increase	Illumina [~ 11800000] (imputed)	N
682	chr7	12765222	12765223	rs111654949	30894546	Ivarsdottir EV	2019-03-20	Nat Commun	Sequence variation at ANAPC1 accounts for 24% of the variability in corneal endothelial cell density.	Corneal endothelial cell density	6,125 Icelandic ancestry individuals	NA	7p21.3	NR	rs111654949-T	NR	9E-7		0.383	unit increase	Illumina [NR]	N
682	chr7	12773702	12773703	rs62450572	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	7p21.3	NR	rs62450572-C	0.111442	4E-10		0.018385	[0.013-0.024] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
682	chr7	12841379	12841380	rs12538763	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	7p21.3	NR	rs12538763-?	NR	1E-9				Affymetrix [NR]	N
683	chr7	12847458	12847459	rs1013686	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	7p21.3	SCIN	rs1013686-?	NR	5E-7	(ureidopropionic acid)	0.19816606	[0.12-0.28] unit increase	Affymetrix [at least 2500000] (imputed)	N
683	chr7	12866710	12866711	rs117925145	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		AC011287.1	rs117925145-?	NR	2E-9	(male)	4.9099	[NR] unit increase	Affymetrix [NR] (imputed)	N
683	chr7	12932048	12932049	rs732577	21658281	Aouizerat BE	2011-06-10	BMC Cardiovasc Disord	GWAS for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease.	Sudden cardiac arrest	88 European ancestry cases, 517 European ancestry controls	NA	7p21.3	intergenic	rs732577-?	0.50	4E-6	(Recessive)	1.15	[1.08-1.22]	Affymetrix [319222]	N
683	chr7	12937254	12937255	rs17166499	20889312	Wang KS	2010-10-01	Schizophr Res	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	7p21.3	NR	rs17166499-?	NR	5E-6		1.5129	[NR]	Affymetrix [722112]	N
683	chr7	12951292	12951293	rs74555387	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	7p21.3		rs74555387-A	0.054555	8E-6		0.065681	[0.037-0.095] unit decrease	Affymetrix [15580782] (imputed)	N
683	chr7	12975554	12975555	rs11980091	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	7p21.3	NR	rs11980091-?	NR	2E-6		0.4696	[NR] unit increase	Illumina [up to 11892802] (imputed)	N
684	chr7	13054193	13054194	rs116884796	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	7p21.3	Intergenic	rs116884796-G	0.992	9E-7	(AA)	0.564	NR unit increase	Illumina [NR] (imputed)	N
684	chr7	13082689	13082690	rs73261947	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		AC011287.1	rs73261947-?	NR	2E-9	(female)	4.82173	[NR] unit decrease	Affymetrix [NR] (imputed)	N
684	chr7	13083494	13083495	rs13247236	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7p21.3		rs13247236-?	NR	9E-9				NR [~ 8900000] (imputed)	N
684	chr7	13097796	13097797	rs6962531	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	7p21.3	SCIN	rs6962531-?	NR	8E-6	(threonine)	0.21609482	[0.12-0.31] unit decrease	Affymetrix [at least 2500000] (imputed)	N
685	chr7	13111177	13111178	rs190130937	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	7p21.3	Intergenic	rs190130937-C	0.993	3E-6	(AA)	0.517	NR unit increase	Illumina [NR] (imputed)	N
685	chr7	13184751	13184752	rs75099760	33223526	Hong S	2020-11-22	Transl Psychiatry	Genome-wide association study of Alzheimer's disease CSF biomarkers in the EMIF-AD Multimodal Biomarker Discovery dataset.	Central cerebrospinal fluid amyloid beta 42 to 40 ratio (abnormal vs normal)	418 European ancestry cases, 259 European ancestry controls	NA	7p21.3		rs75099760-C	0.05	6E-6		0.26	[0.145-0.46630000000000005]	Illumina [7778465] (imputed)	N
685	chr7	13206525	13206526	rs180804449	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (underestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	7p21.3	NR	rs180804449-?	NR	5E-10		6.221	NR z score increase	Illumina [at least 830937] (imputed)	N
686	chr7	13255050	13255051	rs6976133	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	7p21.3	SCIN	rs6976133-?	NR	9E-7	(uridine)	0.2090004	[0.13-0.29] unit increase	Affymetrix [at least 2500000] (imputed)	N
686	chr7	13255406	13255407	rs6942409	33736632	Zeng Z	2021-03-18	BMC Med Genomics	Genome-wide association study identifies new loci associated with risk of HBV infection and disease progression.	Development of chronic hepatitis B	up to 495 Chinese ancestry cases, up to 367 Chinese ancestry controls	NA	7p21.3	NR	rs6942409-?	NR	3E-6				Affymetrix [607153]	N
686	chr7	13318565	13318566	rs1010123	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Tea consumption	336,898 European ancestry individuals	39,924 European ancestry individuals	7p21.3	ARL4A	rs1010123-A	0.2305	2E-7		0.0093	[0.0058-0.0128] unit increase	Affymetrix [~ 7740000] (imputed)	N
687	chr7	13396629	13396630	rs140817150	27236921	Rautanen A	2016-06-02	Am J Hum Genet	Polymorphism in a lincRNA Associates with a Doubled Risk of Pneumococcal Bacteremia in Kenyan Children.	Pneumococcal bacteremia	429 African ancestry cases, 2,677 African ancestry controls	113  African ancestry cases, 1,336 African ancestry controls	7p21.3	intergenic	rs140817150-?	NR	2E-9		2.47	[NR]	Affymetrix [up to 10996499] (imputed)	N
687	chr7	13409919	13409920	rs2723433	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	7p21.3	NR	rs2723433-?	NR	8E-6		4.47	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
687	chr7	13410830	13410831	rs184134223	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Daytime sleep phenotypes	874 European ancestry individuals	NA	7p21.3	AC011288.2	rs184134223-A	NR	2E-6	(daytime resting duration, weekdays)	0.2973	[0.17-0.42] unit increase	Affymetrix [7141204] (imputed)	N
687	chr7	13440221	13440222	rs10255329	23934736	Yu B	2013-08-11	Genet Epidemiol	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels  (X-11787)	1,260 African American individuals	NA	7p21.3	LOC100131022	rs10255329-C		7E-6		0.06	[0.03-0.08] unit decrease	Affymetrix [~ 2500000] (imputed)	N
687	chr7	13445625	13445626	rs11971750	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	7p21.3	Intergenic	rs11971750-A	0.6272	2E-8	(MTAG)	0.0076	[0.0049-0.0103] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
687	chr7	13481625	13481626	rs1432486	28000841	Baek SH	2016-12-14	Mol Med Rep	Genome-wide association scans for idiopathic osteonecrosis of the femoral head in a Korean population.	Idiopathic osteonecrosis of the femoral head	217 Korean ancestry cases, 217 Korean ancestry controls	NA	7p21.3	intergenic	rs1432486-?	NR	3E-6		1.93	1.47-2.54	Affymetrix [509886]	N
687	chr7	13491683	13491684	rs375359693	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	7p21.3	ARL4A, ETV1	rs375359693-?	NR	4E-9		0.666	[0.44-0.89] unit decrease	Illumina [34656550] (imputed)	N
688	chr7	13501833	13501834	rs76092496	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Aspartate aminotransferase levels in excessive alcohol consumption	951 individuals	NA	7p21.3	NR	rs76092496-?	NR	5E-6		0.0394	[0.023-0.056] unit decrease	Illumina [~ 7800000] (imputed)	N
688	chr7	13523682	13523683	rs4492265	33332786	Zhang Y	2020-12-15	Spine (Phila Pa 1976)	Genome-Wide Association Analysis Across 16,956 Patients Identifies a Novel Genetic Association Between BMP6, NIPAL1, CNGA1 and Spondylosis.	Spondylosis	4,434 European ancestry cases, 9,416 European ancestry controls	NA	7p21.3	AC011288.2	rs4492265-A	NR	2E-6		0.973	[0.961- 0.984]	Illumina [6740241] (imputed)	N
688	chr7	13543728	13543729	rs13307587	23738518	Luciano M	2013-06-05	Genes Brain Behav	A genome-wide association study for reading and language abilities in two population cohorts.	Reading and spelling	6,649 European ancestry children and adolescents	NA	7p21.3	intergenic	rs13307587-A	0.67	5E-6		0.088	[0.051-0.125] unit decrease	Illumina [~ 2400000] (imputed)	N
688	chr7	13554007	13554008	rs13227425	23738518	Luciano M	2013-06-05	Genes Brain Behav	A genome-wide association study for reading and language abilities in two population cohorts.	Word reading	6,649 European ancestry children and adolescents		7p21.3	intergenic	rs13227425-?	NR	7E-6				Illumina [~ 2400000] (imputed)	N
688	chr7	13557622	13557623	rs2692464	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Longevity	up to 482,000 European ancestry individuals	NA	7p21.3	NR	rs2692464-A	NR	3E-6		0.009467	[0.0055-0.0135] unit increase	Illumina [~ 540852]	N
688	chr7	13560220	13560221	rs1357978	23738518	Luciano M	2013-06-05	Genes Brain Behav	A genome-wide association study for reading and language abilities in two population cohorts.	Word reading	6,649 European ancestry children and adolescents		7p21.3	intergenic	rs1357978-A	0.30	6E-6		0.07	[0.039-0.101] unit increase	Illumina [~ 2400000] (imputed)	N
688	chr7	13596665	13596666	rs186353318	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Uterine fibroids (MTAG)	5,236 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	7p21.3	Intergenic	rs186353318-?		4E-6		1.07	[1.04-1.10]	Illumina [7645193] (imputed)	N
689	chr7	13632227	13632228	rs12668467	26631737	Teumer A	2015-12-02	Diabetes	Genome-wide Association Studies Identify Genetic Loci Associated With Albuminuria in Diabetes.	Urinary albumin-to-creatinine ratio in non-diabetics	up to 46,051 European ancestry individuals	NA	7p21.3	Intergenic	rs12668467-T	0.27	4E-6		0.043	[0.025-0.061] unit decrease	Affymetrix, Illumina [2191945] (imputed)	N
689	chr7	13645858	13645859	rs112115472	30850646	Tziotzios C	2019-03-08	Nat Commun	Genome-wide association study in frontal fibrosing alopecia identifies four susceptibility loci including HLA-B*07:02.	Frontal fibrosing alopecia	1,016 European ancestry cases, 4,145 European ancestry controls		7p21.3	NR	rs112115472-C	0.963	7E-7		2.66	[1.81-3.93]	Illumina [~ 8000000] (imputed)	N
689	chr7	13655048	13655049	rs6949071	32238385	Nakayama A	2020-04-01	Ann Rheum Dis	Subtype-specific gout susceptibility loci and enrichment of selection pressure on ABCG2 and ALDH2 identified by subtype genome-wide meta-analyses of clinically defined gout patients.	Renal underexcretion gout	654 Japanese ancestry male cases, 4,554 Japanese ancestry male controls	NA	7p21.3	ARL4A, ETV1	rs6949071-C	0.226	3E-7		1.48	[1.27-1.72]	Illumina [7206774] (imputed)	N
689	chr7	13680611	13680612	rs966031	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	7p21.3		rs966031-?	NR	5E-10				Affymetrix [NR] (imputed)	N
689	chr7	13683762	13683763	rs17167307	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	7p21.3	ARL4A, LOC100131022	rs17167307-G	0.001	1E-6		34.43	[3.56-333.11]	Illumina [1556551]	N
689	chr7	13696332	13696333	rs73681522	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		7p21.3	Intergenic	rs73681522-A	0.051	4E-6	(liability model)	0.16	[0.082-0.238] unit increase	NR [19725427] (imputed)	N
689	chr7	13731121	13731122	rs17167368	30068317	Li X	2018-08-01	BMC Med Genet	Genome-wide association study of lung function and clinical implication in heavy smokers.	Post bronchodilator percent predicted FEV1 in smoking	1,086 European ancestry COPD cases, 559 European ancestry controls	NA	7p21.3	ETV1	rs17167368-G		8E-6		15.55	unit increase	Illumina [635970]	N
689	chr7	13731121	13731122	rs17167368	30068317	Li X	2018-08-01	BMC Med Genet	Genome-wide association study of lung function and clinical implication in heavy smokers.	Post bronchodilator FEV1/FVC ratio in smoking	1,086 European ancestry COPD cases, 559 European ancestry controls	NA	7p21.3	ETV1	rs17167368-G		3E-6		0.101	[NR] unit increase	Illumina [635970]	N
690	chr7	13794848	13794849	rs9648182	29317602	Hall LS	2018-01-10	Transl Psychiatry	Genome-wide meta-analyses of stratified depression in Generation Scotland and UK Biobank.	Major depressive disorder	6,997 European ancestry female cases, 16,172 European ancestry female controls, 3,852 European ancestry male cases, 16,034 European ancestry male controls	NA	7p21.2	intergenic	rs9648182-A	NR	8E-6		0.11	[0.051-0.169] unit decrease	Affymetrix, Illumina [7105178] (imputed)	N
690	chr7	13794848	13794849	rs9648182	29317602	Hall LS	2018-01-10	Transl Psychiatry	Genome-wide meta-analyses of stratified depression in Generation Scotland and UK Biobank.	Major depressive disorder	6,997 European ancestry female cases, 16,172 European ancestry female controls, 3,852 European ancestry male cases, 16,034 European ancestry male controls	NA	7p21.2	intergenic	rs9648182-A	0.12	9E-8	(females)	0.17	[0.11-0.23] unit decrease	Affymetrix, Illumina [7105178] (imputed)	N
690	chr7	13886653	13886654	rs7787720	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	7p21.2		rs7787720-T	0.44341703	1E-9		0.055914577	[0.038-0.074] unit increase	Illumina [13429769] (imputed)	N
690	chr7	13886653	13886654	rs7787720	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	46,511 Asian ancestry cases, 169,776 Asian ancestry controls	NA	7p21.2	NR	rs7787720-C	0.5541	1E-8		0.0498	[0.033-0.067] unit decrease	Affymetrix, Illumina [1077427] (imputed)	N
690	chr7	13886653	13886654	rs7787720	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	7p21.2	NR	rs7787720-C	0.5594	4E-13		0.0285	[0.021-0.036] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
690	chr7	13886653	13886654	rs7787720	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	7p21.2	ETV1	rs7787720-T	0.421	2E-15		1.06	[1.04-1.07]	Affymetrix, Illumina [11800000] (imputed)	N
690	chr7	13888698	13888699	rs56805921	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	7p21.2		rs56805921-C	0.430727859	3E-10		1.0561278	[1.038309874-1.074251352]	Illumina [8919992] (imputed)	N
690	chr7	13888698	13888699	rs56805921	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	7p21.2	ETV1, ARL4A	rs56805921-C	0.43	3E-9		1.06	1.04-1.08	Illumina [12557761] (imputed)	N
690	chr7	13889560	13889572	rs145928363	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	7p21.2		rs145928363-C	NR	2E-9		0.0386	[0.026-0.051] unit increase	Affymetrix, Illumina [25845091] (imputed)	N
691	chr7	13894275	13894276	rs1019029	28566273	Scott RA	2017-05-31	Diabetes	An Expanded Genome-Wide Association Study of Type 2 Diabetes in Europeans.	Type 2 diabetes	up to 26,676 European ancestry cases, up to 132,532 European ancestry controls	14,545 European ancestry cases, 38,994 European ancestry controls	7p21.2	NR	rs1019029-G	0.479	6E-6		1.05	[1.03-1.07]	Affymetrix, Illumina [at least 11579618] (imputed)	N
691	chr7	13900324	13900325	rs1122518	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	7p21.2	NR	rs1122518-C	0.4728	1E-8		0.0263	[0.017-0.035] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
691	chr7	13900730	13900731	rs7795991	24509480	Mahajan A	2014-02-09	Nat Genet	Genome-wide trans-ancestry meta-analysis provides insight into the genetic architecture of type 2 diabetes susceptibility.	Type 2 diabetes	12,171 European ancestry cases, 56,862 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls	21,491 European ancestry cases, 55,647 European ancestry controls	7p21.2	ETV1	rs7795991-G		7E-7		1.05	[1.03-1.07]	Affymetrix, Illumina [2500000] (imputed)	N
691	chr7	13922140	13922141	rs7788657	25201988	Rietveld CA	2014-09-08	Proc Natl Acad Sci U S A	Common genetic variants associated with cognitive performance identified using the proxy-phenotype method.	Educational attainment	106,736 European ancestry individuals	NA	7p21.2	intergenic	rs7788657-T	0.436	9E-7		0.056	[NR] unit increase	Affymetrix, Illumina [NR] (imputed)	N
691	chr7	13932825	13932826	rs541860626	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Extrahepatic cholangiocarcinoma	148 British ancestry cases, 408,035 British ancestry controls	NA	7p21.2	ETV1	rs541860626-?	NR	5E-8				Affymetrix [11811438] (imputed)	N
691	chr7	13988522	13988523	rs725964	32121467	Adewuyi EO	2020-02-29	Genes (Basel)	Shared Molecular Genetic Mechanisms Underlie Endometriosis and Migraine Comorbidity.	Endometriosis or migraine	17,054 European and Japanese ancestry endometriosis cases, 29,208 European ancestry migraine cases, 191,858 European and Japanese ancestry controls, 172,931 European ancestry controls	NA	7p21.2	NR	rs725964-A	NR	9E-6	(random effect)	1.0416667	NR	NR [6904914] (imputed)	N
691	chr7	14015317	14015318	rs2282867	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	7p21.2		rs2282867-A	NR	5E-12		0.0178	[0.013-0.023] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
691	chr7	14015317	14015318	rs2282867	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	7p21.2		rs2282867-A	NR	4E-11		0.0175	[0.012-0.023] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
691	chr7	14015317	14015318	rs2282867	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	7p21.2	ETV1	rs2282867-A	0.715247	8E-19		0.021784397	[0.017-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
691	chr7	14015317	14015318	rs2282867	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	7p21.2	NR	rs2282867-A	0.71666	1E-20		0.019644	[0.016-0.024] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
691	chr7	14015317	14015318	rs2282867	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	7p21.2		rs2282867-?	NR	2E-17				NR [~ 8900000] (imputed)	N
691	chr7	14018023	14018025	rs10554441	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	7p21.2	ETV1	rs10554441-A	0.722	6E-9		0.02361934	[0.016-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
691	chr7	14019241	14019242	rs2214683	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p21.2	NR	rs2214683-G	0.707979	1E-10				Affymetrix, Illumina [24649327] (imputed)	N
691	chr7	14019241	14019242	rs2214683	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	7p21.2	NR	rs2214683-G	0.719568	4E-13		0.014811	[0.011-0.019] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
691	chr7	14019241	14019242	rs2214683	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p21.2	NR	rs2214683-G	0.712122	4E-18				Affymetrix, Illumina [23472807] (imputed)	N
691	chr7	14020303	14020304	rs17687519	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	7p21.2	Intergenic	rs17687519-T	0.2011	3E-8	(MTAG)	0.0124	[0.0081-0.0167] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
691	chr7	14023806	14023807	rs765982	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	7p21.2	ETV1	rs765982-G	0.718999	1E-10		0.015725572	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
692	chr7	14026356	14026357	rs3213661	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	7p21.2	ETV1	rs3213661-A	0.2852	2E-11		1.0588	NR	Affymetrix [9154080] (imputed)	N
692	chr7	14027556	14027557	rs7789916	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	7p21.2	ETV1	rs7789916-A	0.713545	2E-12		0.017430373	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
692	chr7	14027556	14027557	rs7789916	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	7p21.2	ETV1	rs7789916-A	0.713556	7E-16		0.020078156	[0.015-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
692	chr7	14027556	14027557	rs7789916	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p21.2	NR	rs7789916-A	0.706026	3E-23				Affymetrix, Illumina [24588908] (imputed)	N
692	chr7	14027556	14027557	rs7789916	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	7p21.2	NR	rs7789916-A	0.716228	2E-23		0.020259	[0.016-0.024] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
692	chr7	14027990	14027991	rs6977237	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	7p21.2	Intergenic	rs6977237-T	0.4754	5E-9	(MTAG)	0.0096	[0.0063-0.0129] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
692	chr7	14027990	14027991	rs6977237	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	7p21.2		rs6977237-T	0.4725	6E-9		0.0082	[0.0055-0.0109] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
692	chr7	14027990	14027991	rs6977237	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	7p21.2	Intergenic	rs6977237-T	0.4725	8E-10	(MTAG)	0.008	[0.0055-0.0105] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
692	chr7	14029738	14029739	rs2073533	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	7p21.2	ETV1	rs2073533-T	0.332	3E-6		0.032	[0.018-0.046] unit decrease	Affymetrix [7947838] (imputed)	N
692	chr7	14029771	14029772	rs2073532	32589924	Bi W	2020-06-23	Am J Hum Genet	A Fast and Accurate Method for Genome-Wide Time-to-Event Data Analysis and Its Application to UK Biobank.	Coronary atherosclerosis (time to event)	19,079 British ancestry cases, 263,792 British ancestry controls	NA	7p21.2	ETV1	rs2073532-?	NR	5E-8				NR [~ 24000000] (imputed)	N
692	chr7	14032649	14032650	rs41504	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	7p21.2		rs41504-C	NR	5E-10		0.0085	[0.0058-0.0112] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
692	chr7	14032649	14032650	rs41504	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	7p21.2	ETV1	rs41504-A	0.5949	2E-6		0.0318	[0.019-0.045] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
692	chr7	14032655	14032656	rs41503	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7p21.2		rs41503-?	NR	2E-9				NR [~ 8900000] (imputed)	N
692	chr7	14049826	14049827	rs145063132	30591961	Huang L	2018-12-24	Sci China Life Sci	Genome-wide analysis identified 17 new loci influencing intraocular pressure in Chinese population.	Intraocular pressure	5,571 Chinese ancestry individuals	2,981 Chinese ancestry individuals	7p21.2	ETV1, DGKB	rs145063132-G	0.01	8E-9		5.76	NR z score decrease	Illumina [at least 900015] (imputed)	N
692	chr7	14071085	14071086	rs567790465	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	7p21.2	Y_RNA	rs567790465-A	0.9977	7E-6		0.4458	[0.25-0.64] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
692	chr7	14093913	14093914	rs4027217	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	7p21.2	ETV1, DGKB	rs4027217-C	0.783	4E-8		1.0261357		Affymetrix [11880941] (imputed)	N
692	chr7	14115835	14115836	rs17691790	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	7p21.2	NR	rs17691790-?	NR	3E-6		4.651	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
693	chr7	14172288	14172289	rs17167910	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7p21.2	NR	rs17167910-C	0.01568	2E-8	(COQ9)	0.01887	NR unit increase	Illumina [1671387] (imputed)	N
693	chr7	14216441	14216442	rs17167945	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	7p21.2	NR	rs17167945-G	0.15	3E-10		0.015	[0.01-0.02] unit increase	Affymetrix [2446094] (imputed)	N
693	chr7	14216441	14216442	rs17167945	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	7p21.2	NR	rs17167945-G	0.15	5E-8				Affymetrix [2446094] (imputed)	N
693	chr7	14220764	14220765	rs570352685	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	7p21.2		rs570352685-C	0.0010017	9E-6		0.46858	[0.26-0.68] unit decrease	Affymetrix [15580782] (imputed)	N
693	chr7	14228443	14228444	rs35915890	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	7p21.2		rs35915890-?	NR	1E-8				NR [~ 8900000] (imputed)	N
693	chr7	14228702	14228703	rs2068399	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	7p21.2	NR	rs2068399-?	NR	9E-6				Affymetrix [5486770] (imputed)	N
693	chr7	14229537	14229538	rs35221866	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	7p21.2	NR	rs35221866-T	NR	3E-17		0.0267	[0.02-0.033] unit decrease	Affymetrix [9000000] (imputed)	N
693	chr7	14237239	14237240	rs10260511	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (multi-trait analysis)	90,939 European ancestry individuals	NA	7p21.2	DGKB	rs10260511-C	0.84	3E-14		0.009	NR unit decrease	Affymetrix, Illumina [8002429] (imputed)	N
693	chr7	14237239	14237240	rs10260511	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (adjusted for vertical disc diameter)	67,040 British ancestry individuals	NA	7p21.2	DGKB	rs10260511-C	0.84	2E-8		0.00704	[0.0046-0.0095] unit decrease	Affymetrix [at least 8002429] (imputed)	N
693	chr7	14245376	14245377	rs10274998	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Vertical cup-disc ratio	21,768 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	8,168 Asian ancestry individuals	7p21.2	DGKB	rs10274998-T	NR	5E-8		0.008	[0.006-0.01] unit increase	Affymetrix, Illumina [~ 8000000] (imputed)	N
693	chr7	14245376	14245377	rs10274998	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Vertical cup-disc ratio	21,768 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	8,168 Asian ancestry individuals	7p21.2	DGKB	rs10274998-T	NR	2E-8	(EA)	0.01	[0.0061-0.0139] unit increase	Affymetrix, Illumina [~ 8000000] (imputed)	N
693	chr7	14250720	14250721	rs73679687	30014611	Weiss RB	2018-07-16	Ann Neurol	Long-range genomic regulators of THBS1 and LTBP4 modify disease severity in Duchenne muscular dystrophy.	Age at loss of ambulation in Duchenne muscular dystrophy	243 European ancestry cases, 10 cases	NA	7p21.2	NR	rs73679687-?	NR	8E-6				Illumina [1735619]	N
693	chr7	14270474	14270475	rs985105	31790847	Hou R	2019-11-29	Bone	Genetic variants affecting bone mineral density and bone mineral content at multiple skeletal sites in Hispanic children.	Bone mineral content	1,030 Hispanic or Latin American children	NA	7p21.2	DGKB	rs985105-A	0.18	9E-7	(left rib)	0.29	[0.17-0.41] g decrease	Illumina [> 1100000]	N
693	chr7	14281909	14281910	rs17765925	25648963	Debette S	2014-11-25	Biol Psychiatry	Genome-wide studies of verbal declarative memory in nondemented older people: the Cohorts for Heart and Aging Research in Genomic Epidemiology consortium.	Verbal declarative memory	Up to 27,337 European ancestry individuals, up to 472 Korkulan individuals, up to 1,267 Erasmus Rucphen Family individuals	Up to 10,617 European ancestry individuals, up to 3,811 African American individuals	7p21.2	DGKB, ETV1	rs17765925-G	0.3	3E-6	(VPWL-dr, EA)			Affymetrix, Illumina [NR] (imputed)	N
694	chr7	14305026	14305027	rs62443661	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric bone mineral density (spine)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	7p21.2	NR	rs62443661-T	0.31	3E-7	(Females)	0.272856	[0.17-0.38] unit increase	Illumina [~ 6600000] (imputed)	N
694	chr7	14360008	14360009	rs10215596	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Blautia)	1,068 Japanese ancestry individuals	NA	7p21.2	DGKB	rs10215596-T	0.17	1E-6	(male)	0.122	[0.073-0.171] unit increase	Illumina [6380737] (imputed)	N
694	chr7	14372008	14372009	rs55734480	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	7p21.2	DGKB	rs55734480-A	0.249	2E-12		1.06	[1.04-1.07]	Illumina [34740186] (imputed)	N
694	chr7	14372008	14372009	rs55734480	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	7p21.2	DGKB	rs55734480-A	0.27	7E-10		1.05	[1.03-1.07]	Affymetrix, Illumina [up to 12149979] (imputed)	N
694	chr7	14372008	14372009	rs55734480	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	7p21.2	DGKB	rs55734480-A	0.26	1E-10	(EA)	1.06	[1.04-1.08]	Affymetrix, Illumina [up to 12149979] (imputed)	N
694	chr7	14373713	14373714	rs12154315	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atrial fibrillation/atrial flutter	29,212 European ancestry cases, 400,539 European ancestry controls, 4,150 East Asian ancestry cases, 155,540 East Asian ancestry controls	NA	7p21.2		rs12154315-T	NR	8E-11		0.0686	[0.048-0.089] unit increase	Affymetrix, Illumina [25830072] (imputed)	N
694	chr7	14375976	14375977	rs13240040	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	NA	7p21.2	DGKB	rs13240040-A	0.6836	4E-10		0.1186	[0.081-0.156] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
694	chr7	14385631	14385632	rs17774495	31557306	Wang RS	2019-09-26	Clin Pharmacol Ther	Pharmacogenomics and Placebo Response in a Randomized Clinical Trial in Asthma.	Response to placebo treatment in childhood asthma (FVC change)	250 European ancestry children	NA	7p21.2	DGKB	rs17774495-C	0.26	5E-6		4.86	NR unit increase	Illumina [NR] (imputed)	N
694	chr7	14389375	14389376	rs536775975	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	7p21.2	DGKB	rs536775975-T	0.9966	6E-6		0.3589	[0.2-0.51] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
694	chr7	14396113	14396114	rs181588285	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	7p21.2	NR	rs181588285-?	NR	2E-6		1.5752	[0.83-2.32] unit increase	Illumina [at least 560000] (imputed)	N
695	chr7	14443891	14443892	rs10227749	29317602	Hall LS	2018-01-10	Transl Psychiatry	Genome-wide meta-analyses of stratified depression in Generation Scotland and UK Biobank.	Major depressive disorder	6,997 European ancestry female cases, 16,172 European ancestry female controls, 3,852 European ancestry male cases, 16,034 European ancestry male controls	NA	7p21.2	DGKB	rs10227749-T	NR	4E-6	(females)	0.12	[0.061-0.179] unit increase	Affymetrix, Illumina [7105178] (imputed)	N
695	chr7	14445916	14445917	rs6971925	19176441	Yang JJ	2009-01-28	JAMA	Genome-wide interrogation of germline genetic variation associated with treatment response in childhood acute lymphoblastic leukemia.	Response to treatment for acute lymphoblastic leukemia	356 European ancestry cases, 53 Black cases, 78 cases	NA	7p21.2	DGKB	rs6971925-T	NR	3E-6		13.91	[2.72-70.92]	Affymetrix [476796]	N
695	chr7	14453834	14453835	rs56352403	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	7p21.2	DGKB	rs56352403-G	0.64	1E-16		0.56	[0.42-0.7] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
695	chr7	14453834	14453835	rs56352403	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	7p21.2	DGKB	rs56352403-G	0.6409	2E-16		0.5747	[0.44-0.71] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
696	chr7	14639697	14639698	rs1525085	31447353	Maciukiewicz M	2019-08-22	Schizophr Res	Genome-wide association study on antipsychotic-induced weight gain in Europeans and African-Americans.	Antipsychotic drug-induced weight gain in schizophrenia	144 European ancestry individuals, 57 African American individuals	NA	7p21.2	DGKB	rs1525085-?	NR	2E-6		4.789	z-score increase	Illumina [1819374] (imputed)	N
696	chr7	14645948	14645949	rs9638713	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	7p21.2	NR	rs9638713-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
696	chr7	14645948	14645949	rs9638713	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	7p21.2		rs9638713-?	NR	8E-9				NR [~ 8900000] (imputed)	N
696	chr7	14645948	14645949	rs9638713	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	7p21.2	NA	rs9638713-A	0.0267	9E-9		0.0298	[0.02-0.04] unit increase	NR [~ 27400000] (imputed)	N
697	chr7	14687748	14687749	rs190675597	30217971	Ho KWD	2018-09-14	Transl Psychiatry	Genome-wide association study of seasonal affective disorder.	Seasonality and depression	1,380 European ancestry cases, 2,937 European ancestry controls	NA	7p21.2	DGKB	rs190675597-A		6E-6		0.7	[0.4-1] unit increase	Affymetrix, Illumina [8153767] (imputed)	N
697	chr7	14730794	14730795	rs12699655	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	7p21.2	FLJ16237	rs12699655-?	NR	3E-8	(indole-3-propionate)	0.2075649	[0.13-0.28] unit decrease	Affymetrix [at least 2500000] (imputed)	N
697	chr7	14798617	14798618	rs7788935	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	7p21.2	Intergenic	rs7788935-T	0.8775	3E-8	(MTAG)	0.0112	[0.0073-0.0151] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
697	chr7	14806557	14806558	rs2358067	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	7p21.2		rs2358067-?	NR	6E-13				NR [~ 8900000] (imputed)	N
698	chr7	14818014	14818015	rs142431388	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	7p21.2	DGKB	rs142431388-G	NR	2E-6		1.27282	[0.75-1.79] unit increase	Illumina [at least 950000] (imputed)	N
698	chr7	14825608	14825609	rs10215015	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	7p21.2	Intergenic	rs10215015-A	0.8093	3E-10	(MTAG)	0.0144	[0.0099-0.0189] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
698	chr7	14850052	14850053	rs1981680	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	7p21.2	NR	rs1981680-?	NR	1E-33				Affymetrix [NR]	N
698	chr7	14854542	14854543	rs7779072	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	7p21.2	Intergenic	rs7779072-T	0.799	3E-8		0.0158	[0.01-0.021] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
698	chr7	14855061	14855062	rs4721377	26950853	Dehghan A	2016-03-07	PLoS One	Genome-Wide Association Study for Incident Myocardial Infarction and Coronary Heart Disease in Prospective Cohort Studies: The CHARGE Consortium.	Incident myocardial infarction	1,570 European ancestry cases, at least 21,618 European ancestry controls	2,328 European ancestry cases, 546 African American ancestry cases, 7655 African American ancestry controls, up to 35,233 European ancestry controls	7p21.2	DGKB	rs4721377-T	NR	2E-6	(EA)	1.26	[1.14-1.38]	Affymetrix, Illumina [2543842] (imputed)	N
698	chr7	14856924	14856925	rs10276530	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	7p21.2	Intergenic	rs10276530-T	0.5217	4E-9		0.0115	[0.0076-0.0154] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
698	chr7	14876807	14876808	rs58500374	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	7p21.2	Intergenic	rs58500374-A	0.8604	2E-11	(MTAG)	0.016	[0.011-0.021] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
698	chr7	14882427	14882428	rs11980500	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	7p21.2		rs11980500-A	NR	2E-8		1.0528978	[1.0341474712256-1.07198803882948]	Illumina [8919992] (imputed)	N
698	chr7	14898281	14898282	rs17168486	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	7p21.2		rs17168486-T	0.395878524	1E-10		0.059999146	[0.042-0.078] unit increase	Illumina [13429769] (imputed)	N
698	chr7	14898281	14898282	rs17168486	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	7p21.2		rs17168486-T	0.399741548	4E-8		0.054982394	[0.035-0.075] unit increase	Illumina [13134967] (imputed)	N
698	chr7	14898281	14898282	rs17168486	33842983	Chung RH	2021-04-12	Diabetologia	Multi-omics analysis identifies CpGs near G6PC2 mediating the effects of genetic variants on fasting glucose.	Fasting blood glucose	18,122 Han Chinese ancestry individuals	1,989 Han Chinese ancestry individuals	7p21.2	DGKB	rs17168486-T	0.48	4E-9		0.059	[0.039-0.079] unit increase	Affymetrix [774398] (imputed)	N
698	chr7	14898281	14898282	rs17168486	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	46,511 Asian ancestry cases, 169,776 Asian ancestry controls	NA	7p21.2	NR	rs17168486-C	0.6005	9E-13		0.0623	[0.045-0.079] unit decrease	Affymetrix, Illumina [1077427] (imputed)	N
698	chr7	14898281	14898282	rs17168486	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	7p21.2	DGKB	rs17168486-T	0.418	8E-22		1.07	[1.05-1.08]	Affymetrix, Illumina [11800000] (imputed)	N
698	chr7	14898281	14898282	rs17168486	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	7p21.2	DGKB	rs17168486-T	0.4	2E-12		1.06	1.05-1.08	Illumina [12557761] (imputed)	N
698	chr7	14898281	14898282	rs17168486	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	7p21.2	DGKB	rs17168486-T	0.1808	2E-17		1.07	[1.06-1.09]	Affymetrix, Illumina [~ 27000000] (imputed)	N
698	chr7	14898281	14898282	rs17168486	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	7p21.2	DGKB	rs17168486-T	0.173603116062419	2E-15		0.0742	[0.056-0.093] unit increase	NR [5035015] (imputed)	N
698	chr7	14898281	14898282	rs17168486	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Blood sugar levels	93,146 Japanese ancestry individuals	NA	7p21.2	NR	rs17168486-?	NR	5E-10		0.02961	[0.02-0.039] unit increase novel	Illumina [6108953] (imputed)	N
698	chr7	14898281	14898282	rs17168486	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	7p21.2	DGKB	rs17168486-T	0.166	2E-12	(EA)	0.0928	[0.067-0.119] unit increase	Affymetrix, Illumina [NR] (imputed)	N
698	chr7	14898281	14898282	rs17168486	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	7p21.2	DGKB	rs17168486-T	0.166	1E-12		0.065	[0.047-0.083] unit increase	Affymetrix, Illumina [NR] (imputed)	N
698	chr7	14898281	14898282	rs17168486	24509480	Mahajan A	2014-02-09	Nat Genet	Genome-wide trans-ancestry meta-analysis provides insight into the genetic architecture of type 2 diabetes susceptibility.	Type 2 diabetes	12,171 European ancestry cases, 56,862 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls	21,491 European ancestry cases, 55,647 European ancestry controls	7p21.2	DGKB	rs17168486-T	0.19	3E-7		1.13	[1.07-1.19]	Affymetrix, Illumina [2500000] (imputed)	N
698	chr7	14898281	14898282	rs17168486	22885922	Morris AP	2012-09-01	Nat Genet	Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes.	Type 2 diabetes	6,377 European ancestry male cases, 5,794 European ancestry female cases, 22,243 European ancestry male controls, 34,619 European ancestry female controls	12,938 European ancestry male cases, 8,553 European ancestry female cases, 904 Pakistani ancestry male cases, 274 Pakistani ancestry female cases, 30,273 European ancestry male controls, 25,374 European ancestry female controls, 2,088 Pakistani ancestry male controls, 384 Pakistani ancestry female controls	7p21.2	DGKB	rs17168486-T	NR	7E-13	(men)	1.15	[1.11-1.19]	Affymetrix, Illumina [up to 2500000] (imputed)	N
698	chr7	14898281	14898282	rs17168486	22885922	Morris AP	2012-09-01	Nat Genet	Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes.	Type 2 diabetes	6,377 European ancestry male cases, 5,794 European ancestry female cases, 22,243 European ancestry male controls, 34,619 European ancestry female controls	12,938 European ancestry male cases, 8,553 European ancestry female cases, 904 Pakistani ancestry male cases, 274 Pakistani ancestry female cases, 30,273 European ancestry male controls, 25,374 European ancestry female controls, 2,088 Pakistani ancestry male controls, 384 Pakistani ancestry female controls	7p21.2	DGKB	rs17168486-T	0.19264055499943	6E-11		1.11	[1.07-1.14]	Affymetrix, Illumina [up to 2500000] (imputed)	N
698	chr7	14899266	14899267	rs17310345	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	7p21.2	intergenic	rs17310345-C	NR	8E-6				Illumina [up to 11995908] (imputed)	N
698	chr7	14918062	14918063	rs2358073	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	7p21.2		rs2358073-?	NR	1E-10				NR [~ 8900000] (imputed)	N
698	chr7	14919851	14919852	rs10281892	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	7p21.2		rs10281892-G	0.411700528	1E-12		1.0617586	[1.044293048-1.079516224]	Illumina [8919992] (imputed)	N
698	chr7	14922006	14922007	rs10276674	31021400	Masotti M	2019-04-25	Biometrics	Pleiotropy informed adaptive association test of multiple traits using GWAS summary data.	Glycemic traits (pleiotropy)	46,186 European ancestry individuals	NA	7p21.2	DGKB	rs10276674-?	NR	2E-11				NR [NR]	N
699	chr7	15002020	15002021	rs12670706	35131881	Testori A	2022-02-07	Cancer Epidemiol Biomarkers Prev	Genetic analysis in African American children supports ancestry specific neuroblastoma susceptibility.	Neuroblastoma	629 African American cases, 2,990 African American controls	NA	7p21.2		rs12670706-A	NR	3E-6		0.3266	unit increase	Illumina [8524982] (imputed)	N
699	chr7	15016016	15016017	rs11520696	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	7p21.2	NR	rs11520696-G	NR	8E-13		0.0202	[0.015-0.026] unit increase	Affymetrix [9000000] (imputed)	N
699	chr7	15019258	15019259	rs9986829	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	7p21.2	NR	rs9986829-A	0.506753	5E-45		0.0413601	[0.035-0.047] unit increase	Affymetrix [16577313] (imputed)	N
699	chr7	15019258	15019259	rs9986829	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	7p21.2	NR	rs9986829-A	0.506704	4E-43		0.0279447	[0.024-0.032] unit increase	Affymetrix [16583148] (imputed)	N
699	chr7	15019258	15019259	rs9986829	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	7p21.2	NR	rs9986829-A	0.506865	3E-76		0.0556073	[0.05-0.062] unit increase	Affymetrix [16577424] (imputed)	N
699	chr7	15031449	15031450	rs10278686	34337532	Fantus RJ	2021-05-25	Eur Urol Open Sci	Genetic Susceptibility for Low Testosterone in Men and Its Implications in Biology and Screening: Data from the UK Biobank.	Low testosterone levels	13,409 European ancestry male cases, 98,267 European ancestry male controls	4,426 European ancestry male cases, 32,800 European ancestry male controls	7p21.2	NR	rs10278686-C	0.51	1E-15		1.1	NR	NR [8853336] (imputed)	N
699	chr7	15031449	15031450	rs10278686	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	7p21.2	NR	rs10278686-T	0.49053	1E-14		0.00987923	[0.0074-0.0124] unit increase	Affymetrix [16578495] (imputed)	N
699	chr7	15031506	15031507	rs12534970	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	7p21.2		rs12534970-G	NR	2E-9		0.0098	[0.0067-0.0129] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
699	chr7	15031506	15031507	rs12534970	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	7p21.2		rs12534970-G	NR	3E-9		0.0099	[0.0066-0.0132] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
699	chr7	15031506	15031507	rs12534970	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	7p21.2	DGKB	rs12534970-A	0.508428	3E-11		0.012178	[0.0086-0.0158] unit decrease	NR [13737936] (imputed)	N
699	chr7	15031506	15031507	rs12534970	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	7p21.2		rs12534970-?	NR	5E-9				NR [~ 8900000] (imputed)	N
699	chr7	15039498	15039499	rs1002061	29358691	Bonas-Guarch S	2018-01-22	Nat Commun	Re-analysis of public genetic data reveals a rare X-chromosomal variant associated with type 2 diabetes.	Type 2 diabetes	19,693 European ancestry cases, 107,308 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls		7p21.2	DGKB	rs1002061-A	NR	2E-6		1.0789626		Affymetrix, Illumina [1918233] (imputed)	N
699	chr7	15051788	15051789	rs6972516	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glucose levels	114,870 European ancestry individuals	NA	7p21.2		rs6972516-G	0.468486	3E-19		0.0368229	[0.029-0.045] unit decrease	NR [11722792] (imputed)	N
699	chr7	15052859	15052860	rs6960043	22885922	Morris AP	2012-09-01	Nat Genet	Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes.	Type 2 diabetes	6,377 European ancestry male cases, 5,794 European ancestry female cases, 22,243 European ancestry male controls, 34,619 European ancestry female controls	12,938 European ancestry male cases, 8,553 European ancestry female cases, 904 Pakistani ancestry male cases, 274 Pakistani ancestry female cases, 30,273 European ancestry male controls, 25,374 European ancestry female controls, 2,088 Pakistani ancestry male controls, 384 Pakistani ancestry female controls	7p21.2	DGKB	rs6960043-C	0.470992007052675	3E-7		1.06	[1.04-1.09]	Affymetrix, Illumina [up to 2500000] (imputed)	N
699	chr7	15053877	15053878	rs2191346	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	35,619 East Asian ancestry individuals	NA	7p21.2	DGKB	rs2191346-C	0.2791	2E-13		0.0325	[0.024-0.041] unit decrease	Affymetrix, Illumina [15438438] (imputed)	N
699	chr7	15059271	15059272	rs11514706	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	7p21.2		rs11514706-C	NR	9E-22		0.0601	[0.048-0.072] unit increase	Affymetrix, Illumina [25845091] (imputed)	N
699	chr7	15060409	15060410	rs7786873	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	7p21.2	NR	rs7786873-G	0.521063	1E-10		0.011913	[0.0083-0.0155] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
699	chr7	15060428	15060429	rs10231021	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting glucose	4,734 individuals	NA	7p21.2		rs10231021-A	0.502275804	2E-8		0.117167	[0.077-0.158] mmol/l increase	Illumina [7701709] (imputed)	N
699	chr7	15060428	15060429	rs10231021	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	7p21.2	DGKB	rs10231021-A	0.5053	9E-14		0.0089	[0.0064-0.0114] unit increase	Affymetrix, Illumina [33811881] (imputed)	N
699	chr7	15060428	15060429	rs10231021	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	7p21.2	NR	rs10231021-A	0.523501	2E-10		0.011786	[0.0082-0.0154] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
699	chr7	15060428	15060429	rs10231021	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	7p21.2	DGKB	rs10231021-A	0.64	8E-11		1.06	1.04-1.08	Illumina [12557761] (imputed)	N
699	chr7	15063378	15063379	rs80005921	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	7p21.2		rs80005921-G	NR	2E-10		1.0562805	[1.03862776493174-1.07423333576492]	Illumina [8919992] (imputed)	N
699	chr7	15063429	15063430	rs10487796	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	200,622 European ancestry individuals	NA	7p21.2	AGMO	rs10487796-A	0.4756	5E-52		0.0261	[0.023-0.029] unit decrease	Affymetrix, Illumina [34064007] (imputed)	N
699	chr7	15063568	15063569	rs10228066	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	7p21.2	DGKB	rs10228066-T	0.5373	1E-28		1.07	[1.06-1.09]	Affymetrix, Illumina [~ 27000000] (imputed)	N
699	chr7	15063832	15063833	rs10244051	19060910	Sabatti C	2008-12-07	Nat Genet	Genome-wide association analysis of metabolic traits in a birth cohort from a founder population.	Metabolic traits	4,763 Northern Finnish founder individuals	NA	7p21.2	intergenic	rs10244051-C	0.46	1E-7	(GLU)	0.05	[0.03-0.06] mmol/l increase	Illumina [329091]	N
699	chr7	15063925	15063926	rs10228456	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Type 2 diabetes	approximately 459,000 European ancestry individuals	NA	7p21.2		rs10228456-?	NR	1E-14				NR [~ 8900000] (imputed)	N
699	chr7	15064189	15064190	rs10228796	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	9,343 South Asian ancestry individuals	NA	7p21.2	AGMO	rs10228796-C	0.3733	9E-6		0.0512	[0.028-0.075] unit decrease	Illumina, Perlegen [20274841] (imputed)	N
699	chr7	15064189	15064190	rs10228796	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	19,247 Hispanic individuals	NA	7p21.2	AGMO	rs10228796-C	0.5318	1E-7		0.029	[0.019-0.039] unit decrease	Affymetrix, Illumina [28177426] (imputed)	N
699	chr7	15064189	15064190	rs10228796	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	7p21.2	NR	rs10228796-G	0.5666	2E-71		0.0672	[0.06-0.075] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
699	chr7	15064254	15064255	rs2191348	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	7p21.2	AGMO	rs2191348-G	0.45306459897734	3E-19		0.0652	[0.051-0.08] unit decrease	NR [5035015] (imputed)	N
699	chr7	15064308	15064309	rs2191349	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting glucose	73,089 European ancestry women	NA	7p21.2	DGKB, TMEM195	rs2191349-G	0.477985	2E-18		0.025152	[0.02-0.031] unit decrease	Affymetrix, Illumina [8700000] (imputed)	N
699	chr7	15064308	15064309	rs2191349	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting glucose	67,506 European ancestry men	NA	7p21.2	DGKB, TMEM195	rs2191349-G	0.477985	8E-25		0.031637	[0.026-0.038] unit decrease	Affymetrix, Illumina [8700000] (imputed)	N
699	chr7	15064308	15064309	rs2191349	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting glucose	151,188 European ancestry individuals	NA	7p21.2	DGKB, TMEM195	rs2191349-G	0.477985	4E-40		0.026933	[0.023-0.031] unit decrease	Affymetrix, Illumina [8700000] (imputed)	N
699	chr7	15064308	15064309	rs2191349	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	7p21.2	NR	rs2191349-G	0.461	6E-48		0.0661	[0.057-0.075] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
699	chr7	15064308	15064309	rs2191349	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Fasting blood glucose	6,457 African American individuals, 13,556 Hispanic/Latino individuals, 1,918 Asian ancestry individuals, 1,400 Native Hawaiian ancestry individuals, 412 Native American ancestry individuals, 168 individuals	NA	7p21.2	NR	rs2191349-?	NR	7E-7		0.04492428	[0.027-0.063] unit increase	Illumina [29713514] (imputed)	N
699	chr7	15064308	15064309	rs2191349	28898252	Wheeler E	2017-09-12	PLoS Med	Impact of common genetic determinants of Hemoglobin A1c on type 2 diabetes risk and diagnosis in ancestrally diverse populations: A transethnic genome-wide meta-analysis.	Glycated hemoglobin levels	88,355 European ancestry individuals	NA	7p21.2	DGKB	rs2191349-T	0.532	2E-7		0.0086	[0.0053-0.0119] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
699	chr7	15064308	15064309	rs2191349	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	7p21.2	DGKB	rs2191349-T	0.505	1E-9		0.048	[0.032-0.064] unit increase	Affymetrix, Illumina [NR] (imputed)	N
699	chr7	15064308	15064309	rs2191349	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	7p21.2	DGKB	rs2191349-T	0.505	1E-6	(EA)	0.0497	[0.03-0.07] unit increase	Affymetrix, Illumina [NR] (imputed)	N
699	chr7	15064308	15064309	rs2191349	25631608	Wessel J	2015-01-29	Nat Commun	Low-frequency and rare exome chip variants associate with fasting glucose and type 2 diabetes susceptibility.	Fasting blood glucose	50,900 European ancestry non-diabetic individuals, 9,664 African American non-diabetic individuals	NA	7p21.2	DGKB, TMEM195	rs2191349-G	0.452877416253482	4E-12		0.021517994	[0.015-0.028] unit decrease	Illumina [197481]	N
699	chr7	15064308	15064309	rs2191349	22581228	Manning AK	2012-05-13	Nat Genet	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting blood glucose (BMI interaction)	Up to 58,074 European ancestry individuals	Up tp 38,422 European ancestry individuals	7p21.2	DGKB	rs2191349-T	0.5315	3E-21		2.0E-4	[-0.00111-0.00151] unit increase	Affymetrix, Illumina [~ 2400000] (imputed)	N
699	chr7	15064308	15064309	rs2191349	22581228	Manning AK	2012-05-13	Nat Genet	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting blood glucose	Up to 58,074 European ancestry individuals	Up tp 38,422 European ancestry individuals	7p21.2	DGKB	rs2191349-T	0.526	2E-20		0.0284	[0.022-0.034] unit increase	Affymetrix, Illumina [~ 2400000] (imputed)	N
699	chr7	15064308	15064309	rs2191349	20081858	Dupuis J	2010-01-17	Nat Genet	New genetic loci implicated in fasting glucose homeostasis and their impact on type 2 diabetes risk.	Homeostasis model assessment of beta-cell function	36,466 European ancestry individuals	62,264 European ancestry individuals	7p21.2	TMEM195, DGKB	rs2191349-T	0.52	3E-17		0.017	[0.011-0.023] unit decrease (replication)	Affymetrix, Illumina [~ 2500000] (imputed)	N
699	chr7	15064308	15064309	rs2191349	20081858	Dupuis J	2010-01-17	Nat Genet	New genetic loci implicated in fasting glucose homeostasis and their impact on type 2 diabetes risk.	Fasting blood glucose	46,186 European ancestry individuals	76,558 European ancestry individuals	7p21.2	TMEM195, DGKB	rs2191349-T	0.52	3E-44		0.03	[0.024-0.036] mmol/L increase (replication)	Affymetrix, Illumina [~ 2500000] (imputed)	N
699	chr7	15064983	15064984	rs6947830	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	133,336 East Asian ancestry individuals	NA	7p21.2		rs6947830-A	0.692983	1E-13		0.0277233	[0.02-0.035] unit increase	Illumina [13476509] (imputed)	N
699	chr7	15064983	15064984	rs6947830	22399527	Kristiansson K	2012-03-07	Circ Cardiovasc Genet	Genome-wide screen for metabolic syndrome susceptibility Loci reveals strong lipid gene contribution but no evidence for common genetic basis for clustering of metabolic syndrome traits.	Metabolic syndrome	2,637 European ancestry cases, 7,927 European ancestry controls	NA	7p21.2	TMEM195, DGKB	rs6947830-A	0.46	1E-13	(GLU)	0.1	[NR] mmol/l increase	Illumina [1257079] (imputed)	N
699	chr7	15065002	15065003	rs4719433	34951656	Downie CG	2021-12-24	Diabetologia	Multi-ethnic GWAS and fine-mapping of glycaemic traits identify novel loci in the PAGE Study.	Fasting glucose adjusted for BMI	52,211 European ancestry, African American or Afro-Caribbean, Hispanic or Latin American, Asian ancestry, Other ancestry, Native American ancestry individuals	NA	7p21.2		rs4719433-T	0.4519	2E-10		0.0408	[0.028-0.053] unit decrease	Affymetrix, Illumina [29259056] (imputed)	N
699	chr7	15065002	15065003	rs4719433	34951656	Downie CG	2021-12-24	Diabetologia	Multi-ethnic GWAS and fine-mapping of glycaemic traits identify novel loci in the PAGE Study.	Fasting glucose adjusted for BMI	19,745 European ancestry individuals	NA	7p21.2		rs4719433-T	0.4581	2E-6		0.0486	[0.029-0.068] unit decrease	Affymetrix, Illumina [29259056] (imputed)	N
699	chr7	15065002	15065003	rs4719433	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	7p21.2		rs4719433-C	NR	3E-14		0.06	[0.045-0.075] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
699	chr7	15065299	15065300	rs1974619	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 29,0641 European ancestry controls	NA	7p21.2	AC006458.3	rs1974619-C	0.449969	3E-9		0.06931081	[0.046-0.092] unit decrease	Affymetrix [7288503] (imputed)	N
699	chr7	15065466	15065467	rs1974620	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	7p21.2		rs1974620-T	NR	3E-32		0.0245	[0.02-0.029] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
699	chr7	15065466	15065467	rs1974620	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Fasting blood glucose	6,457 African American individuals, 13,556 Hispanic/Latino individuals, 1,918 Asian ancestry individuals, 1,400 Native Hawaiian ancestry individuals, 412 Native American ancestry individuals, 168 individuals	NA	7p21.2	NR	rs1974620-?	NR	8E-7		0.04475392	[0.027-0.063] unit increase	Illumina [29713514] (imputed)	N
699	chr7	15065466	15065467	rs1974620	25187374	Hwang JY	2014-09-03	Diabetes	Genome-wide association meta-analysis identifies novel variants associated with fasting plasma glucose in East Asians.	Fasting plasma glucose	24,740 East Asian ancestry individuals	21,345 East Asian ancestry individuals	7p21.2	TMEM195, DGKB	rs1974620-?	NR	3E-11		0.063	[0.045-0.081] unit increase	Affymetrix, Illumina [up to 2315813] (imputed)	N
699	chr7	15065611	15065612	rs1558318	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Blood sugar levels	93,146 Japanese ancestry individuals	NA	7p21.2	DGKB, AGMO	rs1558318-?	NR	5E-13		0.03902	[0.028-0.05] unit increase novel	Illumina [6108953] (imputed)	N
699	chr7	15065795	15065796	rs188745922	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	7p21.2		rs188745922-T	NR	2E-71		0.038	[0.034-0.042] unit increase	Affymetrix, Illumina [20535873] (imputed)	N
699	chr7	15066044	15066045	rs1990379	33842983	Chung RH	2021-04-12	Diabetologia	Multi-omics analysis identifies CpGs near G6PC2 mediating the effects of genetic variants on fasting glucose.	Fasting blood glucose	18,122 Han Chinese ancestry individuals	1,989 Han Chinese ancestry individuals	7p21.2	DGKB	rs1990379-A	0.69	9E-14		0.084	[0.062-0.106] unit increase	Affymetrix [774398] (imputed)	N
699	chr7	15066632	15066633	rs62448650	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	7p21.2	NR	rs62448650-C	NR	5E-18		0.0215	[0.017-0.026] unit increase	Affymetrix [9000000] (imputed)	N
699	chr7	15066723	15066724	rs12113831	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris color (L* coordinate)	329 South Asian ancestry individuals		7p21.2	intergenic	rs12113831-T	0.0767629	4E-6		0.796531	[0.46-1.13] unit decrease	Illumina [640625] (imputed)	N
700	chr7	15093201	15093202	rs7798280	28247064	Deming Y	2017-02-28	Acta Neuropathol	Genome-wide association study identifies four novel loci associated with Alzheimer's endophenotypes and disease modifiers.	Cerebrospinal P-tau181p levels	3,146 individuals	NA	7p21.2	DGKB, AGMO	rs7798280-A	0.329	7E-7		0.034	[0.02-0.048] unit decrease	Illumina [7358575] (imputed)	N
700	chr7	15113835	15113836	rs10479944	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7p21.2		rs10479944-?	NR	1E-9				NR [~ 8900000] (imputed)	N
700	chr7	15133126	15133127	rs12699683	23776197	Leandro-Garcia LJ	2013-06-17	J Med Genet	Genome-wide association study identifies ephrin type A receptors implicated in paclitaxel induced peripheral sensory neuropathy.	Paclitaxel-induced neuropathy	143 European ancestry individuals		7p21.2	DGKB, AGMOI	rs12699683-A	0.09	7E-6		3.66	[2.08-6.45]	Illumina [518577]	N
700	chr7	15187908	15187909	rs115030349	30287806	Zhou H	2018-10-04	Transl Psychiatry	Genome-wide association study identifies glutamate ionotropic receptor GRIA4 as a risk gene for comorbid nicotine dependence and major depression.	Nicotine dependence and major depression (severity of comorbidity)	3,724 African American individuals	NA	7p21.2	Intergenic	rs115030349-T	0.0205	2E-7		1.982	[1.23-2.73] unit increase	Illumina [9520174] (imputed)	N
701	chr7	15206238	15206239	rs2908334	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	7p21.2	DGKB	rs2908334-T	0.6308	6E-6		1.03	[1.02-1.04]	Affymetrix, Illumina [~ 27000000] (imputed)	N
701	chr7	15226639	15226640	rs7783100	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	7p21.2	DGKB	rs7783100-?	NR	2E-6	(F1P; F6P; G1P; G6P)	0.2633226	[0.16-0.37] unit decrease	Affymetrix [at least 2500000] (imputed)	N
701	chr7	15239893	15239894	rs12531478	26305897	Iyengar SK	2015-08-25	PLoS Genet	Genome-Wide Association and Trans-ethnic Meta-Analysis for Advanced Diabetic Kidney Disease: Family Investigation of Nephropathy and Diabetes (FIND).	Diabetic kidney disease	up to 1,564 African American cases, 369  African American diabetic controls, 1,288 African American non-diabetic controls, 538 American Indian ancestry cases, 319 American Indian ancestry diabetic controls, 342 European ancestry cases, 404 European ancestry diabetic controls, 779 Mexican ancestry cases, 594 Mexican ancestry diabetic controls	NA	7p21.2	NR	rs12531478-A	NR	4E-6	(additive)	2.24	1.59-3.15	Affymetrix [NR]	N
701	chr7	15241436	15241437	rs7777171	29210060	Koster R	2017-12-06	Int J Cancer	Genome-wide association study identifies the GLDC/IL33 locus associated with survival of osteosarcoma patients.	Overall survival in osteosarcoma	523 European ancestry individuals	109 Brazilian ancestry individuals	7p21.2	NR	rs7777171-T	NR	4E-6		1.55	[1.29-1.88]	Illumina [510856]	N
701	chr7	15290922	15290923	rs76527197	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		AGMO	rs76527197-?	NR	5E-9	(female)	0.329497	[NR] unit increase	Affymetrix [NR] (imputed)	N
701	chr7	15294804	15294805	rs11770137	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Unilateral cleft lip	184 Asian ancestry cases, 151 European ancestry cases, 167 Hispanic cases, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	7p21.2	NR	rs11770137-?	NR	5E-6		1.0	[0.93-1.08]	Illumina [539000] (imputed)	N
701	chr7	15300374	15300375	rs10232074	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	7p21.2		rs10232074-?	NR	5E-11		0.0155844	[0.011-0.021] unit decrease	Affymetrix [20259828] (imputed)	N
701	chr7	15311629	15311630	rs529621062	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	7p21.2	NR	rs529621062-?	NR	7E-6		1.2076	[0.68-1.74] unit increase	NR [13958389] (imputed)	N
702	chr7	15335935	15335936	rs12531027	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	7p21.2	AGMO	rs12531027-G	0.034	3E-7	(HRmax )	0.04	[NR] bpm increase	Illumina [899892]	N
702	chr7	15343025	15343026	rs4461788	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	7p21.2		rs4461788-A	0.18	9E-9		5.75	z score increase	Affymetrix [9061022] (imputed)	N
702	chr7	15379429	15379430	rs73064535	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure in major depressive disorder	13,393 European ancestry cases, 9,487 European ancestry controls	NA	7p21.2	NR	rs73064535-T	0.9804157	6E-6		1.126126	[1.07-1.18]	Affymetrix [7791636] (imputed)	N
702	chr7	15410327	15410327	rs60424486	31095341	Kerns SL	2019-05-16	J Natl Cancer Inst	Radiogenomics Consortium Genome-Wide Association Study Meta-analysis of Late Toxicity after Prostate Cancer Radiotherapy.	Toxicity response to radiotherapy in prostate cancer (decreased urine stream) (time to event)	3,470 European ancestry individuals	NR	7p21.2	NR	rs60424486-?	0.08	4E-7		1.84	[1.45-2.33]	Affymetrix, Illumina [~ 6000000] (imputed)	N
702	chr7	15414906	15414907	rs143557812	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in dyslipidemia	295 Korean ancestry cases, 20,474 Korean ancestry controls	NA	7p21.2		rs143557812-C	0.01597	8E-6		2.635	[1.72099999999999-4.037]	Affymetrix [7975321] (imputed)	N
702	chr7	15423806	15423807	rs7808567	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Spinal canal stenosis	9,660 European ancestry cases, 445,127 European ancestry controls, 661 East Asian ancestry cases, 178,065 East Asian ancestry controls	NA	7p21.2		rs7808567-T	NR	2E-8		0.1198	[0.078-0.162] unit increase	Affymetrix, Illumina [25840105] (imputed)	N
702	chr7	15434229	15434230	rs73284431	31049640	Chen J	2019-05-02	Diabetologia	Genome-wide association study of type 2 diabetes in Africa.	Type 2 diabetes	2,633 African ancestry cases, 1,714 African ancestry controls	NA	7p21.2	AGMO	rs73284431-G	0.905	5E-9		1.48	[1.30-1.69]	Affymetrix, Illumina [12148595] (imputed)	N
702	chr7	15458538	15458539	rs183966018	31417091	Kou I	2019-08-15	Nat Commun	Genome-wide association study identifies 14 previously unreported susceptibility loci for adolescent idiopathic scoliosis in Japanese.	Adolescent idiopathic scoliosis	5,327 Japanese ancestry cases, 73,884 Japanese ancestry controls	NA	7p21.2	NR	rs183966018-T	NR	2E-6		1.74	[1.39-2.18]	Illumina [9332516] (imputed)	N
703	chr7	15506006	15506007	rs4721442	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	7p21.2	AGMO	rs4721442-T	0.8339	7E-12		0.0215	[0.015-0.028] unit increase	Affymetrix [19819130] (imputed)	N
703	chr7	15506006	15506007	rs4721442	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	7p21.2	AGMO	rs4721442-T	0.8339	1E-9		0.0189	[0.013-0.025] unit increase	Affymetrix [19819130] (imputed)	N
703	chr7	15506006	15506007	rs4721442	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	7p21.2		rs4721442-?	NR	3E-16				NR [~ 8900000] (imputed)	N
703	chr7	15506109	15506110	rs73290427	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	7p21.2		rs73290427-?	NR	2E-9		0.0160479	[0.011-0.021] unit increase	Affymetrix [20259828] (imputed)	N
703	chr7	15506528	15506529	rs55905169	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FVC)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		7p21.2	AGMO	rs55905169-C	0.4	8E-7	(Hispanic)	36.13	[21.8-50.46] unit decrease	Affymetrix, Illumina [10900000] (imputed)	N
703	chr7	15506528	15506529	rs55905169	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FVC)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		7p21.2	AGMO	rs55905169-C	0.31	1E-8		17.57	[11.51-23.63] ml decrease	Affymetrix, Illumina [10900000] (imputed)	N
703	chr7	15506528	15506529	rs55905169	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FEV1)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		7p21.2		rs55905169-?	NR	1E-6		13.11	[7.84-18.38] unit decrease	Affymetrix, Illumina [10900000] (imputed)	N
703	chr7	15508135	15508136	rs7789097	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	7p21.2	AGMO	rs7789097-C	0.853846	1E-10		0.0166789	[0.012-0.022] unit increase	NR [13737936] (imputed)	N
703	chr7	15521357	15521358	rs6461187	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	7p21.2		rs6461187-?	NR	3E-12				NR [~ 8900000] (imputed)	N
703	chr7	15593767	15593768	rs916943	26767831	Grant AV	2016-01-14	Hum Genet	A genome-wide association study of pulmonary tuberculosis in Morocco.	Tuberculosis	up to 42 Moroccan ancestry affected parents, 210 Moroccan ancestry unaffected parents, up to 239 Moroccan ancestry affected offspring and 67 Moroccan ancestry unaffected offspring from 135 families	up to 317 Moroccan ancestry cases, 650 Moroccan ancestry controls	7p21.2	AGMO	rs916943-T	0.05	2E-6	(age at onset < 25 years)	2.73	[1.78-4.18]	Illumina [5390648] (imputed)	N
704	chr7	15598753	15598754	rs117755882	33106475	Li QS	2020-10-26	Transl Psychiatry	Genome-wide association studies of antidepressant class response and treatment-resistant depression.	Response to norepinephrine-dopamine reuptake inhibitors (responders vs non-responders)	3,971 European ancestry responders, 3,512 European ancestry non-responders	NA	7p21.2	NR	rs117755882-C	NR	5E-6		0.4515	NR	Illumina [at least 560000] (imputed)	N
704	chr7	15610695	15610696	rs6951635	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (min-P)	26,502 European ancestry individuals	NA	7p21.2	CRB1, DENND1B	rs6951635-?		5E-8				NR [7428630] (imputed)	N
704	chr7	15610695	15610696	rs6951635	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	7p21.2	NR	rs6951635-?	NR	4E-10	(X4th ventricle)			NR [9227495] (imputed)	N
704	chr7	15619289	15619290	rs7799810	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	7p21.2		rs7799810-C	0.24	3E-15		7.91	z score increase	Affymetrix [9061022] (imputed)	N
704	chr7	15630870	15630871	rs11763353	23720494	Evans DM	2013-05-29	Hum Mol Genet	Genome-wide association study identifies loci affecting blood copper, selenium and zinc.	Blood trace element (Zn levels)	2,603 European ancestry individuals	NA	7p21.2	MEOX2	rs11763353-?	NR	7E-7		0.192	[0.12-0.27] unit increase	Illumina [> 2500000] (imputed)	N
704	chr7	15636878	15636878	rs397948882	31417091	Kou I	2019-08-15	Nat Commun	Genome-wide association study identifies 14 previously unreported susceptibility loci for adolescent idiopathic scoliosis in Japanese.	Adolescent idiopathic scoliosis	5,327 Japanese ancestry cases, 73,884 Japanese ancestry controls	NA	7p21.2	AGMO, MEOX2	rs397948882-A	0.1	4E-8		1.2	[1.12-1.28]	Illumina [9332516] (imputed)	N
704	chr7	15644297	15644298	rs1859270	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	7p21.2	NR	rs1859270-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
704	chr7	15650227	15650228	rs12699747	32572145	Kawafune K	2020-06-22	J Hum Genet	Strong association between the 12q24 locus and sweet taste preference in the Japanese population revealed by genome-wide meta-analysis.	Sweet taste preference	12,312 Japanese ancestry individuals	NA	7p21.2	AGMO, MEOX2	rs12699747-C	0.831	3E-6		0.073	[0.042-0.104] unit increase	Illumina [5299861] (imputed)	N
704	chr7	15654044	15654044	rs111428477	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	7p21.2		rs111428477-?	NR	4E-39		0.0283842	[0.024-0.033] unit decrease	Affymetrix [20259828] (imputed)	N
704	chr7	15664570	15664571	rs10261246	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	7p21.2	MEOX2	rs10261246-G	0.322948	1E-14		0.016773	[0.013-0.021] unit decrease	NR [13737936] (imputed)	N
704	chr7	15676018	15676019	rs3823871	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	7p21.2		rs3823871-?	NR	5E-49				NR [~ 8900000] (imputed)	N
704	chr7	15693905	15693906	rs10249754	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	7p21.2		rs10249754-?	NR	5E-45		0.0295277	[0.025-0.034] unit decrease	Affymetrix [20259828] (imputed)	N
704	chr7	15693905	15693906	rs10249754	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	7p21.2	MEOX2	rs10249754-A	0.345909	2E-11	(women)	0.0304873	[0.021-0.04] unit decrease	NR [17166351] (imputed)	N
704	chr7	15693905	15693906	rs10249754	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	7p21.2	MEOX2	rs10249754-A	0.344732	2E-17		0.0298954	[0.023-0.037] unit decrease	NR [17166351] (imputed)	N
704	chr7	15693905	15693906	rs10249754	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	7p21.2	MEOX2	rs10249754-A	0.343383	7E-7	(men)	0.0273577	[0.017-0.038] unit decrease	NR [17166351] (imputed)	N
704	chr7	15715055	15715056	rs6980299	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	7p21.2		rs6980299-C	NR	8E-14		0.0127	[0.0094-0.016] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
704	chr7	15715055	15715056	rs6980299	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7p21.2		rs6980299-?	NR	2E-14				NR [~ 8900000] (imputed)	N
704	chr7	15718530	15718531	rs6942739	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	7p21.2		rs6942739-?	NR	4E-52		0.0329709	[0.029-0.037] unit decrease	Affymetrix [20259828] (imputed)	N
704	chr7	15719406	15719407	rs7781366	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Total intracranial volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	7p21.2	MEOX2	rs7781366-?		5E-6				Illumina [4322238] (imputed)	N
704	chr7	15721177	15721178	rs3801427	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	7p21.2	MEOX2	rs3801427-C	0.237298	1E-25		0.0252104	[0.02-0.03] unit decrease	NR [13737936] (imputed)	N
704	chr7	15727328	15727329	rs740567	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	7p21.2		rs740567-?	NR	4E-9				NR [~ 8900000] (imputed)	N
705	chr7	15733117	15733118	rs11764932	25493955	Gorski M	2014-12-10	Kidney Int	Genome-wide association study of kidney function decline in individuals of European descent.	Kidney function decline traits	up to 45,530 European ancestry individuals	up to 18,028 European ancestry individuals	7p21.2	MEOX2	rs11764932-A	0.36	4E-7	(Rapid decline overall)	0.09	[NR] unit increase	Affymetrix, Illumina [2500000] (imputed)	N
705	chr7	15742785	15742786	rs10486776	17434096	Matarin M	2007-05-06	Lancet Neurol	A genome-wide genotyping study in patients with ischaemic stroke: initial analysis and data release.	Stroke	249 European ancestry cases, 268 European ancestry controls	NA	7p21.2	intergenic	rs10486776-?	0.10	6E-6		5.62	[2.66-11.9]	Illumina [408803]	N
705	chr7	15746809	15746810	rs12536444	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	7p21.2	NR	rs12536444-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
705	chr7	15757999	15758000	rs2159222	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine with aura	5,118 European ancestry cases, 74,239 European ancestry controls	NA	7p21.2	intergenic	rs2159222-?	0.82	8E-6		1.16	[1.09-1.23]	Affymetrix, Illumina [~ 2300000] (imputed)	N
705	chr7	15774137	15774138	rs7778833	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	7p21.2	NR	rs7778833-?	NR	1E-6		0.0789	[0.047-0.111] unit increase	Illumina [at least 560000] (imputed)	N
705	chr7	15845438	15845439	rs143707182	34239500	Livingstone KM	2021-06-22	Front Endocrinol (Lausanne)	Discovery Genome-Wide Association Study of Body Composition in 4,386 Adults From the UK Biobank's Pilot Imaging Enhancement Study.	Leg fat mass	2,109 White British ancestry male individuals	NA	7p21.2		rs143707182-G	NR	2E-8		1782.6	g increase	NR [6137607] (imputed)	N
706	chr7	15872323	15872324	rs4721457	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	7p21.2	MEOX2-AS1	rs4721457-T	0.8494	2E-13		0.0244	[0.018-0.031] unit increase	Affymetrix [19819130] (imputed)	N
706	chr7	15872323	15872324	rs4721457	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	7p21.2		rs4721457-?	NR	5E-15				NR [~ 8900000] (imputed)	N
706	chr7	15884420	15884421	rs10486782	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	7p21.2	NR	rs10486782-A	0.76106	3E-8		0.00826476	[0.0054-0.0111] unit increase	Affymetrix [16585854] (imputed)	N
706	chr7	15888214	15888215	rs150120071	29703947	Jawinski P	2018-04-27	Mol Psychiatry	Human brain arousal in the resting state: a genome-wide association study.	Resting-state electroencephalogram vigilance	1,877 European ancestry individuals	NA	7p21.2	MEOX2	rs150120071-T	0.987	3E-6	(Stability score)	2.8271	[1.64-4.01] unit increase	Affymetrix [8042262] (imputed)	N
706	chr7	15889359	15889360	rs38166	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	7p21.2	MEOX2	rs38166-T	0.248987	1E-8		0.0125618	[0.0082-0.0169] unit decrease	Affymetrix [NR] (imputed)	N
706	chr7	15898187	15898188	rs111529765	32701715	Zhang Y	2020-07-21	J Bone Joint Surg Am	PPARGC1B Is Associated with Nontraumatic Osteonecrosis of the Femoral Head: A Genomewide Association Study on a Chart-Reviewed Cohort.	Nontraumatic osteonecrosis of the femoral head	118 European ancestry cases, 56,811 European ancestry controls	NA	7p21.2	intergenic	rs111529765-T	0.031	3E-8		3.4	[2.21-5.23]	Illumina [3905175] (imputed)	N
706	chr7	15898714	15898715	rs38179	30369944	Balakrishnan P	2018-10-12	Front Genet	Genetic Variants Related to Cardiometabolic Traits Are Associated to B Cell Function, Insulin Resistance, and Diabetes Among AmeriCan Indians: The Strong Heart Family Study.	HOMA-B (corrected for HOMA-IR)	1,892 American Indian ancestry individuals	NA	7p21.2	MEOX2, LOC729920	rs38179-?	0.45	6E-8		21.54	unit increase	Illumina [120975] (imputed)	N
706	chr7	15905324	15905325	rs10243434	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	7p21.2		rs10243434-C	NR	2E-9		0.0147	[0.01-0.0194] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
706	chr7	15905324	15905325	rs10243434	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	7p21.2	MEOX2	rs10243434-T	0.413296	1E-15		0.016646	[0.013-0.021] unit increase	Affymetrix [NR] (imputed)	N
706	chr7	15909007	15909008	rs38197	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	7p21.2	NR	rs38197-C	0.734418	5E-13		0.00719943	[0.0053-0.0091] unit increase	Affymetrix [16582909] (imputed)	N
706	chr7	15909007	15909008	rs38197	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	7p21.2	NR	rs38197-C	0.734418	1E-8		0.00658437	[0.0045-0.0087] unit increase	Affymetrix [16582965] (imputed)	N
706	chr7	15926227	15926228	rs38221	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	7p21.2	NR	rs38221-C	0.7401	7E-10		0.033	[0.023-0.043] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
706	chr7	15926227	15926228	rs38221	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	7p21.2	NR	rs38221-C	0.764	2E-9		0.0286	[0.019-0.038] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
706	chr7	15941282	15941283	rs38246	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	7p21.2		rs38246-C	NR	1E-9		0.0153	[0.01-0.02] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
706	chr7	15941282	15941283	rs38246	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	7p21.2	intergenic	rs38246-T	0.2494	1E-9		0.0164	[0.011-0.022] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
706	chr7	15947003	15947007	rs138365535	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 19)	2,187 European ancestry individuals	NA	7p21.2	NR	rs138365535-G	0.05642	4E-6		0.2978	[0.17-0.42] unit decrease	Illumina [10677593] (imputed)	N
706	chr7	15957498	15957499	rs17351518	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	7p21.2	ISPD	rs17351518-G	0.336471	4E-12		0.0133968	[0.0096-0.0172] unit increase	NR [13737936] (imputed)	N
706	chr7	15957809	15957810	rs10278969	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	7p21.2		rs10278969-?	NR	2E-14				NR [~ 8900000] (imputed)	N
706	chr7	15957809	15957810	rs10278969	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	7p21.2		rs10278969-?	NR	4E-14		0.0165916	[0.012-0.021] unit increase	Affymetrix [20259828] (imputed)	N
707	chr7	16027188	16027189	rs6953523	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	7p21.2		rs6953523-G	0.281704	3E-8		0.0240781	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
707	chr7	16027188	16027189	rs6953523	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	7p21.2		rs6953523-G	0.281704	4E-8		0.0236253	[0.015-0.032] unit decrease	NR [11722792] (imputed)	N
707	chr7	16027188	16027189	rs6953523	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	7p21.2		rs6953523-G	0.281704	3E-8		0.023907	[0.015-0.032] unit decrease	NR [11722792] (imputed)	N
707	chr7	16068627	16068628	rs35006616	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7p21.2		rs35006616-?	NR	5E-8				NR [~ 8900000] (imputed)	N
707	chr7	16083810	16083811	rs17283214	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	7p21.2		rs17283214-C	NR	5E-9		0.0147	[0.0098-0.0196] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
707	chr7	16089751	16089752	rs9648211	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex interaction	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	7p21.2	ISPD	rs9648211-A	0.57	7E-6				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
707	chr7	16089751	16089752	rs9648211	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	7p21.2	ISPD	rs9648211-A	0.57	4E-6	(women)	0.023	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
707	chr7	16092561	16092562	rs1528152	32469969	Pott J	2020-05-29	PLoS One	Genome-wide analysis of carotid plaque burden suggests a role of IL5 in men.	Mean area of carotid plaque	727 European ancestry men, 550 European ancestry women	NA	7p21.2	ISPD, RPL36AP29, ISPD-AS1	rs1528152-C	0.0150885	3E-7		0.433903	[0.27-0.6] mm2 increase	Affymetrix [532676] (imputed)	N
707	chr7	16092561	16092562	rs1528152	32469969	Pott J	2020-05-29	PLoS One	Genome-wide analysis of carotid plaque burden suggests a role of IL5 in men.	Carotid plaque maximum area	727 European ancestry men, 550 European ancestry women	NA	7p21.2	ISPD, RPL36AP29, ISPD-AS1	rs1528152-C	0.0150885	6E-6		0.487421	[0.28-0.7] mm2 increase	Affymetrix [532676] (imputed)	N
707	chr7	16107357	16107358	rs1528149	25865494	Chan Y	2015-04-09	Am J Hum Genet	Genome-wide Analysis of Body Proportion Classifies Height-Associated Variants by Mechanism of Action and Implicates Genes Important for Skeletal Development.	Sitting height ratio	3,545 African American individuals, 12,965 European ancestry women, 8,625 European ancestry men	NA	7p21.2	NR	rs1528149-C	0.648	5E-6	(EA)	0.047	[0.027-0.067] unit decrease	Affymetrix, Illumina [up to 10250422] (imputed)	N
707	chr7	16112130	16112131	rs13221870	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Carpal tunnel syndrome	18,855 European ancestry cases, 461,346 European ancestry controls, 192 East Asian ancestry cases, 178,534 East Asian ancestry controls	NA	7p21.2		rs13221870-A	NR	2E-10		0.0695	[0.048-0.091] unit increase	Affymetrix, Illumina [25844227] (imputed)	N
707	chr7	16116963	16116964	rs17357511	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	7p21.2	RP11-196O16.1	rs17357511-T	NR	2E-9		0.0178877	[0.012-0.024] unit increase	Affymetrix [321016] (imputed)	N
708	chr7	16121863	16121864	rs6952865	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	7p21.2	RP11-196O16.1	rs6952865-A	NR	6E-10		0.0191948	[0.013-0.025] unit increase	Affymetrix [321788] (imputed)	N
708	chr7	16140076	16140077	rs3857708	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	7p21.2		rs3857708-A	NR	4E-14		0.0192	[0.014-0.024] unit increase	Affymetrix, Illumina [20528270] (imputed)	N
708	chr7	16140076	16140077	rs3857708	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	7p21.2	NR	rs3857708-A	0.2998	5E-14		0.001881	[0.0014-0.0024] unit increase	Affymetrix [NR] (imputed)	N
708	chr7	16141124	16141125	rs62439474	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	7p21.2	NR	rs62439474-T	0.2997	2E-9				NR [9056863] (imputed)	N
708	chr7	16231318	16231319	rs181695237	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	7p21.2	NR	rs181695237-?	NR	3E-6		0.4325	[0.26-0.61] unit decrease	Illumina [at least 560000] (imputed)	N
708	chr7	16234155	16234156	rs6949481	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	7p21.2		rs6949481-?	NR	7E-8				NR [~ 8900000] (imputed)	N
708	chr7	16252415	16252416	rs17169353	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7p21.2	NR	rs17169353-A	0.01568	2E-8	(SPTAN1)	0.4313	NR unit increase	Illumina [1671387] (imputed)	N
709	chr7	16271534	16271535	rs60943478	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7p21.2	NR	rs60943478-A	0.01045	2E-8	(SPTAN1)	0.4364	NR unit increase	Illumina [1671387] (imputed)	N
709	chr7	16288900	16288901	rs1388044873	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	7p21.2	NR	rs1388044873-A	0.8269	3E-8		0.026	[0.017-0.035] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
709	chr7	16299125	16299126	rs73684110	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7p21.2	NR	rs73684110-A	0.02091	1E-8	(HINT1)	0.2099	NR unit decrease	Illumina [1671387] (imputed)	N
709	chr7	16304078	16304079	rs17361889	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric bone mineral content (hip)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	7p21.2	NR	rs17361889-A	0.307	6E-6	(Males)	0.236636	[0.13-0.34] unit decrease	Illumina [~ 6600000] (imputed)	N
709	chr7	16304543	16304544	rs1295145	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	7p21.2		rs1295145-C	0.46	2E-9		6.0	z score increase	Affymetrix [9061022] (imputed)	N
709	chr7	16312056	16312057	rs11766565	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	7p21.2	ISPD	rs11766565-C	NR	2E-10		0.0187257	[0.013-0.025] unit decrease	Affymetrix [321788] (imputed)	N
709	chr7	16315684	16315685	rs73060592	30718321	Sanchez-Roige S	2019-02-04	J Neurosci	Genome-wide association studies of impulsive personality traits (BIS-11 and UPPSP) and drug experimentation in up to 22,861 adult research participants identify loci in the CACNA1I and CADM2 genes.	Impulsivity (non-planning)	21,786 European ancestry individuals	NA	7p21.2	ISPD	rs73060592-T	0.9782	9E-8		0.186	[0.254-0.118] unit decrease	Illumina [11434023] (imputed)	N
709	chr7	16315684	16315685	rs73060592	30718321	Sanchez-Roige S	2019-02-04	J Neurosci	Genome-wide association studies of impulsive personality traits (BIS-11 and UPPSP) and drug experimentation in up to 22,861 adult research participants identify loci in the CACNA1I and CADM2 genes.	Impulsivity	21,495 European ancestry individuals	NA	7p21.2	ISPD	rs73060592-T	0.9781	3E-7		1.719	[2.376-1.062] unit decrease	Illumina [11508759] (imputed)	N
709	chr7	16326645	16326646	rs35681285	23151678	Takata R	2012-11-15	J Hum Genet	Impact of four loci on serum tamsulosin hydrochloride concentration.	Serum tamsulosin hydrochloride concentration	182 Japanese ancestry individuals	NA	7p21.2	ISPD	rs35681285-T	0.02	4E-7		16.75	[10.50-23.00] unit increase	Illumina [481678]	N
709	chr7	16329087	16329088	rs4719463	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	7p21.2	NR	rs4719463-?	NR	4E-8				Illumina [7760689] (imputed)	N
709	chr7	16351898	16351899	rs58327496	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	7p21.2		rs58327496-?	NR	4E-8				NR [~ 8900000] (imputed)	N
709	chr7	16351898	16351899	rs58327496	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	7p21.2	NR	rs58327496-G	0.163747	2E-8		0.0233608	[0.015-0.031] unit decrease	NR [19129689] (imputed)	N
709	chr7	16380805	16380806	rs9648214	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (genus Eubacterium coprostanoligenes group id.11375)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	7p21.2		rs9648214-T	NR	3E-7		5.1561866	z score decrease	Affymetrix, Illumina [NR] (imputed)	N
710	chr7	16495405	16495406	rs12668183	29750799	Chao MJ	2018-05-11	PLoS Genet	Population-specific genetic modification of Huntington's disease in Venezuela.	Huntington's disease (age at onset)	374 Venezuelan ancestry individuals, 4,061 European ancestry individuals	NA	7p21.2	NR	rs12668183-C	0.277	2E-8	(Hispanic)	2.8	[NR] years decrease	Illumina [NR] (imputed)	N
710	chr7	16496091	16496092	rs7798756	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	7p21.2		rs7798756-?	NR	6E-8				NR [~ 8900000] (imputed)	N
710	chr7	16500141	16500142	rs10270805	20339536	Barber MJ	2010-03-22	PLoS One	Genome-wide association of lipid-lowering response to statins in combined study populations.	Response to statin therapy	3,928 European ancestry individuals	NA	7p21.2	SOSTDC1, LOC442511, LOC729920	rs10270805-A	0.07	9E-6	(chol, sum)			Illumina [~ 2500000] (imputed)	N
710	chr7	16509085	16509086	rs1981596	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Lateral ventricle temporal horn volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	7p21.2	NR	rs1981596-?		8E-8				Illumina [4322238] (imputed)	N
712	chr7	16668929	16668930	rs62440988	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	CAG-83 sp000435555 abundance in stool	5,959 Finnish ancestry individuals	NA	7p21.1		rs62440988-T	0.121822	3E-8		0.186582	[0.12-0.25] unit decrease	Illumina [7980478] (imputed)	N
712	chr7	16698266	16698267	rs706025	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	7p21.1	BZW2	rs706025-A	0.527124	9E-28		0.024632702	[0.02-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
712	chr7	16698266	16698267	rs706025	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p21.1	NR	rs706025-C	0.472434	2E-33				Affymetrix, Illumina [17210439] (imputed)	N
712	chr7	16699976	16699977	rs706027	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	7p21.1	BZW2	rs706027-T	0.379592	6E-26		0.025694475	[0.021-0.03] unit increase	Affymetrix [93095623] (imputed)	N
712	chr7	16699976	16699977	rs706027	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	7p21.1	BZW2	rs706027-T	0.379605	2E-23		0.024284804	[0.02-0.029] unit increase	Affymetrix [93095623] (imputed)	N
712	chr7	16699976	16699977	rs706027	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	7p21.1	BZW2	rs706027-T	0.379563	6E-16		0.018432414	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
712	chr7	16699976	16699977	rs706027	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	7p21.1	BZW2	rs706027-T	0.379633	4E-9		0.0125498	[0.0084-0.0167] unit increase	Affymetrix [93095623] (imputed)	N
712	chr7	16699976	16699977	rs706027	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	7p21.1	BZW2	rs706027-T	0.379663	1E-13		0.01677568	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
712	chr7	16699976	16699977	rs706027	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	7p21.1	BZW2	rs706027-T	0.379613	1E-11		0.016546883	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
712	chr7	16699976	16699977	rs706027	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	7p21.1	BZW2	rs706027-T	0.379576	2E-27		0.026291505	[0.022-0.031] unit increase	Affymetrix [93095623] (imputed)	N
712	chr7	16699976	16699977	rs706027	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	7p21.1	BZW2	rs706027-T	0.379603	3E-25		0.025234802	[0.02-0.03] unit increase	Affymetrix [93095623] (imputed)	N
712	chr7	16699976	16699977	rs706027	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p21.1	NR	rs706027-A	0.618309	7E-15				Affymetrix, Illumina [22063850] (imputed)	N
712	chr7	16699976	16699977	rs706027	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	7p21.1	NR	rs706027-A	0.621177	8E-16		0.015615	[0.012-0.019] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
712	chr7	16699976	16699977	rs706027	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p21.1	NR	rs706027-T	0.344865	1E-13				Affymetrix, Illumina [20825802] (imputed)	N
712	chr7	16699976	16699977	rs706027	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	7p21.1		rs706027-?	NR	2E-14				NR [~ 8900000] (imputed)	N
712	chr7	16699976	16699977	rs706027	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	7p21.1		rs706027-?	NR	4E-14				NR [~ 8900000] (imputed)	N
712	chr7	16699976	16699977	rs706027	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	7p21.1	BZW2	rs706027-T	0.3809	8E-26		0.03900041	[0.032-0.046] unit increase	Affymetrix [~ 2500000] (imputed)	N
712	chr7	16699976	16699977	rs706027	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	7p21.1	BZW2	rs706027-T	0.3809	9E-24		0.03734367	[0.03-0.045] unit increase	Affymetrix [~ 2500000] (imputed)	N
712	chr7	16699976	16699977	rs706027	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	7p21.1	BZW2	rs706027-T	0.3809	2E-16		0.03022379	[0.023-0.037] unit increase	Affymetrix [~ 2500000] (imputed)	N
712	chr7	16699976	16699977	rs706027	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	7p21.1	BZW2	rs706027-T	0.3809	1E-27		0.04043556	[0.033-0.048] unit increase	Affymetrix [~ 2500000] (imputed)	N
712	chr7	16699976	16699977	rs706027	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	7p21.1	BZW2	rs706027-T	0.3809	5E-26		0.03911746	[0.032-0.046] unit increase	Affymetrix [~ 2500000] (imputed)	N
712	chr7	16700647	16700648	rs697511	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	7p21.1	NR	rs697511-C	0.468939	4E-35		0.023458	[0.02-0.027] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
712	chr7	16700797	16700798	rs696279	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	7p21.1	BZW2	rs696279-A	0.5321	7E-10		0.02204623	[0.015-0.029] unit decrease	Affymetrix [~ 2500000] (imputed)	N
712	chr7	16706548	16706549	rs6946352	35232999	Garcia-Etxebarria K	2022-03-01	Sci Rep	Local genetic variation of inflammatory bowel disease in Basque population and its effect in risk prediction.	Ulcerative colitis	208 European ancestry cases, 935 European ancestry controls	NA	7p21.1		rs6946352-G	0.045	3E-7		3.2		Illumina [5409651] (imputed)	N
712	chr7	16706548	16706549	rs6946352	35232999	Garcia-Etxebarria K	2022-03-01	Sci Rep	Local genetic variation of inflammatory bowel disease in Basque population and its effect in risk prediction.	Inflammatory bowel disease	498 European ancestry cases, 935 European ancestry controls	NA	7p21.1		rs6946352-G	0.045	4E-6		2.4		Illumina [5411567] (imputed)	N
712	chr7	16707860	16707861	rs58370486	23535033	Sherva R	2013-03-24	Alzheimers Dement	Genome-wide association study of the rate of cognitive decline in Alzheimer's disease.	Alzheimer's disease (cognitive decline)	303 European ancestry cases		7p21.1	BZW2, TSPAN13	rs58370486-?	0.03	6E-11		0.36	unit decrease	Illumina [NR] (imputed)	N
712	chr7	16710604	16710605	rs116196735	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	7p21.1	BZW2	rs116196735-?		7E-10	(African)			Affymetrix, Illumina [18800000] (imputed)	N
712	chr7	16710604	16710605	rs116196735	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	7p21.1	BZW2	rs116196735-?	NR	3E-6	(African)			Affymetrix, Illumina [18800000] (imputed)	N
712	chr7	16713586	16713587	rs142950364	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	7p21.1		rs142950364-A	NR	2E-11		0.0145	[0.01-0.019] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
712	chr7	16731041	16731042	rs696281	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	7p21.1	BZW2	rs696281-T	0.213578	2E-21		0.027569061	[0.022-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
712	chr7	16731041	16731042	rs696281	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	7p21.1	BZW2	rs696281-T	0.213575	3E-19		0.026089903	[0.02-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
712	chr7	16731041	16731042	rs696281	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	7p21.1	BZW2	rs696281-T	0.213573	9E-17		0.024209097	[0.019-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
712	chr7	16731041	16731042	rs696281	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	7p21.1	BZW2	rs696281-T	0.213552	6E-27		0.03108416	[0.025-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
712	chr7	16731041	16731042	rs696281	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	7p21.1	BZW2	rs696281-T	0.21354	2E-25		0.030176552	[0.025-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
712	chr7	16731041	16731042	rs696281	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	7p21.1	NR	rs696281-T	0.21421	6E-14		0.017697	[0.013-0.022] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
712	chr7	16731041	16731042	rs696281	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	7p21.1	BZW2	rs696281-T	0.2149	1E-27		0.04801943	[0.039-0.057] unit decrease	Affymetrix [~ 2500000] (imputed)	N
712	chr7	16731041	16731042	rs696281	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	7p21.1	BZW2	rs696281-T	0.2149	2E-25		0.04597321	[0.037-0.055] unit decrease	Affymetrix [~ 2500000] (imputed)	N
712	chr7	16731041	16731042	rs696281	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	7p21.1	BZW2	rs696281-T	0.2149	5E-29		0.04915672	[0.041-0.058] unit decrease	Affymetrix [~ 2500000] (imputed)	N
712	chr7	16731041	16731042	rs696281	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	7p21.1	BZW2	rs696281-T	0.2149	2E-27		0.04782177	[0.039-0.056] unit decrease	Affymetrix [~ 2500000] (imputed)	N
712	chr7	16735781	16735782	rs706042	29855589	Chernus J	2018-05-31	Sci Rep	GWAS reveals loci associated with velopharyngeal dysfunction.	Velopharyngeal dysfunction	54 Hispanic or Latin American and unknown ancestry cases, 922 Hispanic or Latin American and unknown ancestry controls	NA	7p21.1	NR	rs706042-?	NR	1E-6		0.12076525	[NR] unit decrease	Illumina [at least 269494] (imputed)	N
712	chr7	16749902	16749903	rs1674809	30945665	Bandesh K	2019-03-01	J Genet	Genomewide association study of C-peptide surfaces key regulatory genes in Indians.	C-peptide levels	877 Indo-European ancestry individuals	1,829 Indo-European ancestry individuals, 773 Hispanic individuals	7p21.1	AC073333.8	rs1674809-A	0.441	6E-6	(South Asian)	0.145	NR unit increase	Illumina [552011]	N
712	chr7	16762470	16762471	rs34331204	31497858	Dumitrescu L	2019-09-01	Brain	Sex differences in the genetic predictors of Alzheimer's pathology.	Neurofibrillary tangles	2,701 European ancestry men	NA	7p21.1	BZW2, TSPAN13	rs34331204-C	0.074775	2E-8		0.719945	[0.47-0.97] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
713	chr7	16785552	16785553	rs1674802	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	7p21.1	BZW2	rs1674802-?	NR	7E-7	(kynurenic acid)	0.19800301	[0.12-0.28] unit decrease	Affymetrix [at least 2500000] (imputed)	N
713	chr7	16789678	16789679	rs116089301	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7p21.1	NR	rs116089301-C	0.0122	6E-10	(HSPH1)	0.2011	NR unit increase	Illumina [1671387] (imputed)	N
713	chr7	16794256	16794257	rs7809197	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	7p21.1	Intergenic	rs7809197-A	0.6685	9E-9		0.0119	[0.0078-0.016] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
713	chr7	16811552	16811553	rs6951449	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	7p21.1	Intergenic	rs6951449-T	0.3596	6E-10	(MTAG)	0.0115	[0.0078-0.0152] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
713	chr7	16811552	16811553	rs6951449	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	7p21.1	Intergenic	rs6951449-T	0.3595	2E-8	(MTAG)	0.0096	[0.0063-0.0129] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
713	chr7	16827691	16827692	rs191752533	28334935	Raffield LM	2017-05-15	Hum Mol Genet	Genome-wide association study of iron traits and relation to diabetes in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL): potential genomic intersection of iron and glucose regulation?	Iron status biomarkers (ferritin levels)	12,375 Hispanic/Latino individuals	NA	7p21.1	TSPAN13, AGR2	rs191752533-T	NR	9E-8		0.254	[0.16-0.35] unit increase	Illumina [27700000] (imputed)	N
713	chr7	16837453	16837454	rs2280655	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	7p21.1	NR	rs2280655-C	0.977065699331849	4E-6	(IGP9)	0.6294	[0.36-0.9] unit increase	Illumina [~ 2500000] (imputed)	N
713	chr7	16848374	16848375	rs1149530	29907492	Nakahara S	2018-06-12	Schizophr Res	Polygenic risk score, genome-wide association, and gene set analyses of cognitive domain deficits in schizophrenia.	Information processing speed	2 Alaskan native ancestry schizophrenia cases, 18 Asian ancestry schizophrenia cases, 20 African American schizophrenia cases, 1 Native Hawaiian ancestry schizophrenia cases, 86 European ancestry schizophrenia cases, 2 Alaskan native ancestry controls, 10 Asian ancestry controls, 17 African American controls, 1 Native Hawaiian ancestry controls, 106 European ancestry controls	NA	7p21.1	intergenic	rs1149530-T		6E-7		0.77	[NR] unit increase	Illumina [NR] (imputed)	N
713	chr7	16861848	16861849	rs10253216	23648065	Low SK	2013-05-04	Cancer Sci	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (cisplatin)	176 Japanese ancestry cases, 471 Japanese ancestry controls	NA	7p21.1	AGR2	rs10253216-T	0.468	2E-7	(Dominant model)	1.478	[1.155-1.891]	Illumina [733202]	N
713	chr7	16875499	16875500	rs62441892	35157032	Ramachandran D	2022-02-14	Hum Mol Genet	Genome-wide association study and functional follow-up identifies 14q12 as a candidate risk locus for cervical cancer.	Cervical cancer	363 German ancestry cases, 861 German ancestry controls	NA	7p21.1	NR	rs62441892-C	0.0718	4E-6		24.029	[23.66-24.4]	Illumina [10000612] (imputed)	N
713	chr7	16880243	16880244	rs115150719	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7p21.1	NR	rs115150719-G	0.01045	3E-9	(LDHB)	0.1678	NR unit increase	Illumina [1671387] (imputed)	N
713	chr7	16889811	16889812	rs1525739	23386860	Pasquale LR	2013-01-30	Front Genet	Exploring genome-wide - dietary heme iron intake interactions and the risk of type 2 diabetes.	Type 2 diabetes (dietary heme iron intake interaction)	1,806 European ancestry cases, 2,965 European ancestry controls	NA	7p21.1	AGR2, AGR3	rs1525739-?	NR	6E-6		0.44	[NR] unit decrease	Affymetrix [681770]	N
714	chr7	16910278	16910279	rs2471905	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric bone mineral content (radius)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	7p21.1	NR	rs2471905-G	0.351	4E-6		0.163	[0.094-0.232] unit increase	Illumina [~ 6600000] (imputed)	N
714	chr7	16934303	16934304	rs191060451	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	7p21.1	NR	rs191060451-?	NR	3E-8				Illumina [7760689] (imputed)	N
714	chr7	16934303	16934304	rs191060451	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	7p21.1	NR	rs191060451-?	NR	1E-8				Illumina [7760689] (imputed)	N
714	chr7	16943784	16943785	rs77016575	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Cuneus cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	7p21.1	NR	rs77016575-?		5E-6				Illumina [4322238] (imputed)	N
714	chr7	16944068	16944069	rs74665712	28441426	White CC	2017-04-25	PLoS Med	Identification of genes associated with dissociation of cognitive performance and neuropathological burden: Multistep analysis of genetic, epigenetic, and transcriptional data.	Residual cognition	979 European ancestry individuals	NA	7p21.1	AGR2, AGR3	rs74665712-T	0.07	8E-7		0.58	[NR] z score decrease	Affymetrix, Illumina [~ 7000000] (imputed)	N
714	chr7	16971590	16971591	rs28549925	28468790	Agopian AJ	2017-06-01	Circ Cardiovasc Genet	Genome-Wide Association Studies and Meta-Analyses for Congenital Heart Defects.	Conotruncal heart defects (maternal effects)	up to 838 European ancestry trios	NA	7p21.1	intergenic	rs28549925-?	NR	3E-6		1.159924	[1.089849-1.234505]	Illumina [at least 4756722] (imputed)	N
714	chr7	16971590	16971591	rs28549925	28468790	Agopian AJ	2017-06-01	Circ Cardiovasc Genet	Genome-Wide Association Studies and Meta-Analyses for Congenital Heart Defects.	Congenital heart disease (maternal effect)	1,119 European ancestry trios	NA	7p21.1	intergenic	rs28549925-?	NR	2E-6		1.161366	[1.091756-1.235414]	Illumina [at least 4756722] (imputed)	N
714	chr7	16984279	16984280	rs1636744	30429480	Duffy DL	2018-11-14	Nat Commun	Novel pleiotropic risk loci for melanoma and nevus density implicate multiple biological pathways.	Nevus count or cutaneous melanoma	52,506 European ancestry individuals, 12,874 European ancestry cases, 23,203 European ancestry controls	NA	7p21.1	TCONS_l2_00025686	rs1636744-?	NR	1E-9				Affymetrix, Illumina [7850345] (imputed)	N
714	chr7	16984279	16984280	rs1636744	28212542	Ransohoff KJ	2017-02-09	Oncotarget	Two-stage genome-wide association study identifies a novel susceptibility locus associated with melanoma.	Melanoma	4,842 European ancestry cases, 286,565 European ancestry controls	1,804 European ancestry cases, 1,026 European ancestry controls	7p21.1	AGR3	rs1636744-T	0.41	7E-9		1.1	[NR]	Illumina [at least 560000] (imputed)	N
714	chr7	16984279	16984280	rs1636744	26237428	Law MH	2015-08-03	Nat Genet	Genome-wide meta-analysis identifies five new susceptibility loci for cutaneous malignant melanoma.	Cutaneous malignant melanoma	12,874 European ancestry cases, 23,203 European ancestry controls	785 European ancestry cases, 791 European ancestry controls, 2,331 cases, 2,415 controls	7p21.1	AGR3	rs1636744-T	0.40	7E-9		0.091	[NR] unit increase	Affymetrix, Illumina [at least 1569314] (imputed)	N
714	chr7	16988108	16988109	rs9639279	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	7p21.1		rs9639279-T	NR	1E-7		1.0764263	[1.05-1.11]	Affymetrix [7846216] (imputed)	N
714	chr7	16996527	16996528	rs73069846	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous malignant melanoma	36,760 European ancestry cases, 375,188 European ancestry controls	NA	7p21.1	AGR3	rs73069846-T	0.37336	1E-8		1.0574179	NR	Affymetrix, Illumina [NR] (imputed)	N
714	chr7	17015155	17015156	rs866423	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	7p21.1		rs866423-?	NR	6E-23				NR [~ 8900000] (imputed)	N
714	chr7	17015161	17015162	rs1630916	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	7p21.1		rs1630916-G	NR	2E-16		0.0139	[0.011-0.017] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
714	chr7	17015161	17015162	rs1630916	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	7p21.1		rs1630916-G	0.400738	2E-22		0.022028325	[0.018-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
714	chr7	17015161	17015162	rs1630916	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	7p21.1		rs1630916-G	0.400723	8E-21		0.021082904	[0.017-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
714	chr7	17015161	17015162	rs1630916	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p21.1	NR	rs1630916-G	0.448696	1E-22				Affymetrix, Illumina [19872809] (imputed)	N
714	chr7	17015161	17015162	rs1630916	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	7p21.1	NR	rs1630916-G	0.400508	6E-22		0.019473	[0.016-0.023] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
714	chr7	17019772	17019773	rs74500669	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	7p21.1	AGR3, AHR	rs74500669-G	NR	3E-6		0.301684	[0.18-0.43] unit decrease	Illumina [at least 950000] (imputed)	N
715	chr7	17041433	17041434	rs34585474	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Melanoma	6,777 European ancestry cases, 410,350 European ancestry controls	NA	7p21.1		rs34585474-T	0.118081	1E-7		1.1503509	NR	Affymetrix [7846216] (imputed)	N
715	chr7	17041433	17041434	rs34585474	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	7p21.1		rs34585474-T	0.118081	1E-6		1.1223345	[1.07-1.18]	Affymetrix [7846216] (imputed)	N
715	chr7	17049013	17049014	rs73683618	30694715	Sakornsakolpat P	2019-01-29	Am J Respir Cell Mol Biol	Genome-Wide Association Analysis of Single Breath Diffusing Capacity of Carbon Monoxide (DLCO).	Diffusing capacity of carbon monoxide	2,584 European ancestry individuals with chronic obstructive pulmonary disease, 3,002 European ancestry healthy individuals, 343 African American individuals with chronic obstructive pulmonary disease, 1,006 African American healthy individuals	NA	7p21.1	AGR3	rs73683618-A	0.03	4E-7	(African American)	0.63	0.39-0.87 unit decrease	Illumina [NR] (imputed)	N
715	chr7	17054345	17054346	rs3944100	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in ever smokers	23,223 European ancestry cases,  16,964 European ancestry controls	NA	7p21.1	AGR3, AHR	rs3944100-C	0.368206556	3E-7		1.0820277	[1.050012621-1.115018756]	Illumina [10439017] (imputed)	N
715	chr7	17065964	17065965	rs1029576	28441426	White CC	2017-04-25	PLoS Med	Identification of genes associated with dissociation of cognitive performance and neuropathological burden: Multistep analysis of genetic, epigenetic, and transcriptional data.	Residual cognition	979 European ancestry individuals	NA	7p21.1	intergenic	rs1029576-G	0.41	5E-6		0.2	[NR] z score decrease	Affymetrix, Illumina [~ 7000000] (imputed)	N
715	chr7	17070236	17070237	rs1721043	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	7p21.1		rs1721043-?	NR	3E-8				NR [~ 8900000] (imputed)	N
715	chr7	17079153	17079154	rs11772758	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	7p21.1	AGR3	rs11772758-?		9E-12				Affymetrix, Illumina [NR] (imputed)	N
715	chr7	17085320	17085321	rs6961860	23648065	Low SK	2013-05-04	Cancer Sci	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (all antimicrotubule drugs)	371 Japanese ancestry cases, 825 Japanese ancestry controls	NA	7p21.1	LOC100131425	rs6961860-G	0.495	5E-6	(Recessive model)	1.283	[1.078-1.527]	Illumina [733202]	N
715	chr7	17088757	17088758	rs11359040	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Deep white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	7p21.1	intergenic	rs11359040-D	0.1317	2E-6		0.046	[0.027-0.065] unit increase	Affymetrix, Illumina [NR] (imputed)	N
715	chr7	17089961	17089962	rs4721564	32107650	Liu L	2020-02-27	Clin Transl Med	A trans-ethnic two-stage polygenetic scoring analysis detects genetic correlation between osteoporosis and schizophrenia.	Osteoporosis-related phenotypes (MTAG)	1,627 Han Chinese ancestry individuals with osteoporosis-related bone measurements, 1,475 Han Chinese ancestry schizophrenia cases, 1,022 Han Chinese ancestry schizophrenia controls	NA	7p21.1	intergenic	rs4721564-?	NR	8E-6	(spine BMD MTAG)	0.161	[NR] unit decrease	Affymetrix [NR]	N
715	chr7	17134707	17134708	rs117132860	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Melanoma	3,122 White British ancestry cases, 271,708 White British ancestry controls	NA	7p21.1		rs117132860-?	NR	8E-6		1.36658	[1.23-1.5]	NR [674885]	N
715	chr7	17134707	17134708	rs117132860	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Nevus count or cutaneous melanoma	36,760 European ancestry cutaneous melanoma cases, 375,188 European ancestry controls, 12,930 European ancestry individuals, 52,847 individuals	NA	7p21.1	AC098592.8	rs117132860-G	0.9813828	8E-25				Affymetrix, Illumina [NR] (imputed)	N
715	chr7	17134707	17134708	rs117132860	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous malignant melanoma	36,760 European ancestry cases, 375,188 European ancestry controls	NA	7p21.1	AHR	rs117132860-A	0.0186172	4E-21		1.405679	NR	Affymetrix, Illumina [NR] (imputed)	N
715	chr7	17134707	17134708	rs117132860	32041948	Sarin KY	2020-02-10	Nat Commun	Genome-wide meta-analysis identifies eight new susceptibility loci for cutaneous squamous cell carcinoma.	Cutaneous squamous cell carcinoma	19,149 European ancestry cases, 680,049 European ancestry controls	NA	7p21.1	AGR3, AHR	rs117132860-A	0.021	8E-9		0.25	[0.17-0.33] unit increase	NR [13607369] (imputed)	N
715	chr7	17134707	17134708	rs117132860	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Sunburns	approximately 344,000 European ancestry individuals	NA	7p21.1		rs117132860-?	NR	3E-20				NR [~ 8900000] (imputed)	N
715	chr7	17134707	17134708	rs117132860	27424798	Chahal HS	2016-07-18	Nat Commun	Genome-wide association study identifies novel susceptibility loci for cutaneous squamous cell carcinoma.	Cutaneous squamous cell carcinoma	6,579 European ancestry cases, 280,558 European ancestry controls	825 European ancestry cases, 11,518 European ancestry controls	7p21.1	AHR	rs117132860-A	0.02	4E-8		1.48		Affymetrix, Illumina [at least 560000] (imputed)	N
715	chr7	17145525	17145526	rs75814517	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	7p21.1		rs75814517-A	0.056297	6E-13		0.03480927	[0.025-0.044] unit decrease	Affymetrix [93095623] (imputed)	N
715	chr7	17145525	17145526	rs75814517	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	7p21.1		rs75814517-A	0.056288	3E-11		0.032111	[0.023-0.042] unit decrease	Affymetrix [93095623] (imputed)	N
715	chr7	17162881	17162882	rs17643734	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	7p21.1	NR	rs17643734-G	NR	7E-11		0.0337	[0.024-0.044] unit increase	Affymetrix [9000000] (imputed)	N
715	chr7	17162881	17162882	rs17643734	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p21.1	NR	rs17643734-G	0.0558404	5E-11				Affymetrix, Illumina [23467995] (imputed)	N
715	chr7	17167824	17167825	rs17700436	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	7p21.1	NR	rs17700436-T	0.057432	2E-12		0.028498	[0.021-0.036] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
716	chr7	17186778	17186779	rs6461299	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	7p21.1	AC019117.3	rs6461299-C	0.422	2E-6		0.078	[0.047-0.109] unit decrease	Affymetrix, Illumina [7374092] (imputed)	N
716	chr7	17192271	17192272	rs11766104	31837886	Kennedy OJ	2019-12-02	Am J Kidney Dis	Coffee Consumption and Kidney Function: A Mendelian Randomization Study.	Coffee consumption (cups per day)	227,666 British ancestry individuals	NA	7p21.1	AHR	rs11766104-T	0.167	5E-8		0.043	NR cups per day increase	NR [NR]	N
716	chr7	17197570	17197571	rs1525735	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	7p21.1	intergenic	rs1525735-?	NR	9E-9	(subset analysis)			Illumina [130052]	N
716	chr7	17226460	17226461	rs79060196	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	7p21.1		rs79060196-C	0.148905	8E-9		0.017983327	[0.012-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
716	chr7	17226460	17226461	rs79060196	29855589	Chernus J	2018-05-31	Sci Rep	GWAS reveals loci associated with velopharyngeal dysfunction.	Velopharyngeal dysfunction	54 Hispanic or Latin American and unknown ancestry cases, 922 Hispanic or Latin American and unknown ancestry controls	NA	7p21.1	NR	rs79060196-?	NR	9E-6		0.07920288	[NR] unit decrease	Illumina [at least 269494] (imputed)	N
716	chr7	17243556	17243557	rs145145722	28090653	Liu Y	2017-01-16	Clin Pharmacol Ther	Genome-Wide Study Links PNPLA3 Variant With Elevated Hepatic Transaminase After Acute Lymphoblastic Leukemia Therapy.	Alanine aminotransferase (ALT) levels after remission induction therapy in actute lymphoblastic leukemia (ALL)	up to 488 European ancestry cases, up to 111 African American cases, up to 60 Hispanic cases, up to 56 other ancestry cases	NA	7p21.1	AHR	rs145145722-T		4E-6		2.3809524	[1.09-5.26]	Affymetrix, Illumina [NR] (imputed)	N
716	chr7	17259178	17259179	rs549662428	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	7p21.1		rs549662428-C	NR	1E-9		0.0357	[0.024-0.047] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
716	chr7	17277691	17277692	rs117692895	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Coffee consumption	335,909 European ancestry individuals	39,924 European ancestry individuals	7p21.1	AHR	rs117692895-C	0.0129	4E-10		0.0421	[0.029-0.055] unit increase	Affymetrix [~ 7740000] (imputed)	N
716	chr7	17280512	17280513	rs10252701	31345160	Jia H	2019-07-26	BMC Genet	GWAS of habitual coffee consumption reveals a sex difference in the genetic effect of the 12q24 locus in the Japanese population.	Coffee consumption	6,264 Japanese ancestry individuals	5,975 Japanese ancestry individuals	7p21.1	AHR	rs10252701-C	0.315	1E-14		0.171	[0.13-0.21] unit decrease	Illumina [5264155] (imputed)	N
716	chr7	17280512	17280513	rs10252701	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Coffee consumption (cups per day)	11,862 African American individuals, 15,837 Hispanic/Latino individuals, 3,764 Asian ancestry individuals, 3,857 Native Hawaiian ancestry individuals, 582 Native American ancestry individuals	NA	7p21.1	NR	rs10252701-?	NR	4E-10		0.02918148	[0.02-0.038] unit decrease	Illumina [32504442] (imputed)	N
716	chr7	17281952	17281953	rs115256444	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7p21.1	NR	rs115256444-G	0.01394	2E-8	(WARS)	0.05551	NR unit increase	Illumina [1671387] (imputed)	N
716	chr7	17284576	17284577	rs4410790	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	7p21.1		rs4410790-C	NR	7E-13		0.0141	[0.01-0.018] unit decrease	Affymetrix, Illumina [20538307] (imputed)	N
716	chr7	17284576	17284577	rs4410790	33287642	Said MA	2020-12-08	J Am Heart Assoc	Associations of Observational and Genetically Determined Caffeine Intake With Coronary Artery Disease and Diabetes Mellitus.	Caffeine consumption from tea	395,866 European ancestry individuals	NA	7p21.1	AHR	rs4410790-T	0.36537	1E-67		0.04033	[0.036-0.045] unit decrease	Affymetrix [19400838] (imputed)	N
716	chr7	17284576	17284577	rs4410790	33287642	Said MA	2020-12-08	J Am Heart Assoc	Associations of Observational and Genetically Determined Caffeine Intake With Coronary Artery Disease and Diabetes Mellitus.	Caffeine consumption from coffee or tea	362,316 European ancestry individuals	NA	7p21.1	AHR	rs4410790-T	0.364122	2E-249		0.08137	[0.077-0.086] unit decrease	Affymetrix [19400838] (imputed)	N
716	chr7	17284576	17284577	rs4410790	33287642	Said MA	2020-12-08	J Am Heart Assoc	Associations of Observational and Genetically Determined Caffeine Intake With Coronary Artery Disease and Diabetes Mellitus.	Caffeine consumption from coffee	373,522 European ancestry individuals	NA	7p21.1	AHR	rs4410790-T	0.364412	3E-104		0.05171	[0.047-0.056] unit decrease	Affymetrix [19400838] (imputed)	N
716	chr7	17284576	17284577	rs4410790	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	7p21.1	AHR	rs4410790-T	0.369141	2E-8		0.0110975	[0.0072-0.015] unit increase	Affymetrix [NR] (imputed)	N
716	chr7	17284576	17284577	rs4410790	31959922	Matoba N	2020-01-20	Nat Hum Behav	GWAS of 165,084 Japanese individuals identified nine loci associated with dietary habits.	Coffee consumption	152,634 Japanese ancestry individuals	NA	7p21.1	AGR3, AHR	rs4410790-?	NR	8E-68		0.213	[0.19-0.24] unit increase	Illumina [6108828] (imputed)	N
716	chr7	17284576	17284577	rs4410790	31837886	Kennedy OJ	2019-12-02	Am J Kidney Dis	Coffee Consumption and Kidney Function: A Mendelian Randomization Study.	Coffee consumption (cups per day)	227,666 British ancestry individuals	NA	7p21.1	AHR	rs4410790-C	0.64	6E-70		0.108	NR cups per day increase	NR [NR]	N
716	chr7	17284576	17284577	rs4410790	31630189	Casanova F	2019-10-20	Hum Mol Genet	A genome-wide association study implicates multiple mechanisms influencing raised urinary albumin-creatinine ratio.	Urinary albumin-to-creatinine ratio	437,027 European ancestry individuals	60,130 individuals	7p21.1	AHR	rs4410790-C	0.633	2E-30	(EA)	0.024	[0.02-0.028] unit increase	NR [12082474] (imputed)	N
716	chr7	17284576	17284577	rs4410790	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals, 6,795 African American individuals, 6,324 East Asian ancestry individuals, 2,335 South Asian ancestry individuals, 1,442 Hispanic individuals	NA	7p21.1	AHR	rs4410790-T	NR	7E-25		0.0209	[0.017-0.025] unit decrease	Affymetrix, Illumina [8034757] (imputed)	N
716	chr7	17284576	17284577	rs4410790	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals	NA	7p21.1	AHR	rs4410790-T	0.3689	2E-26		0.0219239	[0.018-0.026] unit decrease	Affymetrix, Illumina [8603712] (imputed)	N
716	chr7	17284576	17284577	rs4410790	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Microalbuminuria	51,861 European, African American, East Asian, South Asian or Hispanic ancestry cases, 297,093 European, African American, East Asian, South Asian or Hispanic ancestry controls	NA	7p21.1	AHR	rs4410790-C	NR	1E-9		1.0425817	[1.03-1.06]	Affymetrix, Illumina [8326000] (imputed)	N
716	chr7	17284576	17284577	rs4410790	31409800	Pazoki R	2019-08-13	Nat Commun	GWAS for urinary sodium and potassium excretion highlights pathways shared with cardiovascular traits.	Urinary sodium excretion	446,237 European ancestry individuals	7,612 African ancestry individuals, 10,095 South Asian ancestry individuals	7p21.1	AHR	rs4410790-T	0.368736	2E-17	(EA)	0.0108651	[0.0084-0.0134] unit increase	Affymetrix [~ 8800000] (imputed)	N
716	chr7	17284576	17284577	rs4410790	31409800	Pazoki R	2019-08-13	Nat Commun	GWAS for urinary sodium and potassium excretion highlights pathways shared with cardiovascular traits.	Urinary potassium excretion	446,230 European ancestry individuals	7,612 African ancestry individuals, 10,095 South Asian ancestry individuals	7p21.1	AHR	rs4410790-T	0.368691	2E-12	(EA)	0.00874545	[0.0063-0.0112] unit increase	Affymetrix [~ 8800000] (imputed)	N
716	chr7	17284576	17284577	rs4410790	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Coffee consumption (cups per day)	11,862 African American individuals, 15,837 Hispanic/Latino individuals, 3,764 Asian ancestry individuals, 3,857 Native Hawaiian ancestry individuals, 582 Native American ancestry individuals	NA	7p21.1	NR	rs4410790-?	NR	6E-16		0.03071323	[0.023-0.038] unit increase	Illumina [32504442] (imputed)	N
716	chr7	17284576	17284577	rs4410790	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	7p21.1	AHR	rs4410790-T	0.3676	1E-13		0.0023	[0.0015-0.0031] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
716	chr7	17284576	17284577	rs4410790	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Tea consumption	336,898 European ancestry individuals	39,924 European ancestry individuals	7p21.1	AHR	rs4410790-C	0.6316	3E-30		0.018	[0.015-0.021] unit increase	Affymetrix [~ 7740000] (imputed)	N
716	chr7	17284576	17284577	rs4410790	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Sweet beverage consumption	85,852 European ancestry individuals	39,924 European ancestry individuals	7p21.1	AHR	rs4410790-T	0.3716	2E-7		0.0096	[0.0061-0.0131] unit increase	Affymetrix [~ 7740000] (imputed)	N
716	chr7	17284576	17284577	rs4410790	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Coffee consumption	335,909 European ancestry individuals	39,924 European ancestry individuals	7p21.1	AHR	rs4410790-C	0.633	4E-142		0.0387	[0.036-0.042] unit increase	Affymetrix [~ 7740000] (imputed)	N
716	chr7	17284576	17284577	rs4410790	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter non-alcoholic beverage consumption	85,852 European ancestry individuals	39,924 European ancestry individuals	7p21.1	AHR	rs4410790-C	0.63	3E-75		0.0305	[0.027-0.034] unit increase	Affymetrix [~ 7740000] (imputed)	N
716	chr7	17284576	17284577	rs4410790	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter beverage consumption	85,852 European ancestry individuals	39,924 European ancestry individuals	7p21.1	AHR	rs4410790-C	0.6298	5E-58		0.0267	[0.023-0.03] unit increase	Affymetrix [~ 7740000] (imputed)	N
716	chr7	17284576	17284577	rs4410790	30910378	Zanetti D	2019-03-12	Kidney Int	Identification of 22 novel loci associated with urinary biomarkers of albumin, sodium, and potassium excretion.	Urinary albumin-to-creatinine ratio	218,759 European ancestry individuals	109,530 European ancestry individuals	7p21.1	AHR	rs4410790-C	0.6348	2E-14		0.023	[0.017-0.029] unit increase	Affymetrix [19420026] (imputed)	N
716	chr7	17284576	17284577	rs4410790	30220432	Haas ME	2018-09-06	Am J Hum Genet	Genetic Association of Albuminuria with Cardiometabolic Disease and Blood Pressure.	Urinary albumin excretion (no hypertensive medication)	302,687 European ancestry individuals without hypertensive medication	NA	7p21.1	AGR3, AHR	rs4410790-C	0.633	1E-18		0.01595	[0.012-0.019] unit increase	Affymetrix [11709857] (imputed)	N
716	chr7	17284576	17284577	rs4410790	30220432	Haas ME	2018-09-06	Am J Hum Genet	Genetic Association of Albuminuria with Cardiometabolic Disease and Blood Pressure.	Urinary albumin excretion	382,500 European ancestry individuals	NA	7p21.1	AGR3, AHR	rs4410790-C	0.634	3E-25		0.01798	[0.015-0.021] unit increase	Affymetrix [11709857] (imputed)	N
716	chr7	17284576	17284577	rs4410790	29367735	Nakagawa-Senda H	2018-01-24	Sci Rep	A genome-wide association study in the Japanese population identifies the 12q24 locus for habitual coffee consumption: The J-MICC Study.	Coffee consumption	11,261 Japanese ancestry individuals	NA	7p21.1	AGR3, AHR	rs4410790-C	0.375	5E-7	(adjusted for smoking status)	0.102	[0.062-0.142] cups per day increase	Illumina [7094228] (imputed)	N
716	chr7	17284576	17284577	rs4410790	27702941	Cornelis MC	2016-10-03	Hum Mol Genet	Genome-wide association study of caffeine metabolites provides new insights to caffeine metabolism and dietary caffeine-consumption behavior.	Caffeine metabolism (plasma 1,7-dimethylxanthine (paraxanthine) to 1,3,7-trimethylxanthine (caffeine) ratio)	5,323 European ancestry individuals	824 European ancestry individuals	7p21.1	AHR	rs4410790-T	0.36	7E-16		8.07	Z-score decrease	Illumina [~ 31000000] (imputed)	N
716	chr7	17284576	17284577	rs4410790	27702941	Cornelis MC	2016-10-03	Hum Mol Genet	Genome-wide association study of caffeine metabolites provides new insights to caffeine metabolism and dietary caffeine-consumption behavior.	Caffeine metabolism (plasma 1,3,7-trimethylxanthine (caffeine) level)	9,054 European ancestry individuals	822 European ancestry individuals	7p21.1	AHR	rs4410790-T	0.36	2E-13		7.36	Z-score increase	Illumina [~ 31000000] (imputed)	N
716	chr7	17284576	17284577	rs4410790	25288136	Cornelis MC	2014-10-07	Mol Psychiatry	Genome-wide meta-analysis identifies six novel loci associated with habitual coffee consumption.	Coffee consumption (cups per day)	91,462 European ancestry individuals	30,062 European ancestry individuals, 7,964 African American individuals	7p21.1	AHR	rs4410790-T	0.37	3E-17		0.1	[0.08-0.12] unit decrease	Affymetrix, Illumina [2373958] (imputed)	N
716	chr7	17284576	17284577	rs4410790	21490707	Cornelis MC	2011-04-07	PLoS Genet	Genome-wide meta-analysis identifies regions on 7p21 (AHR) and 15q24 (CYP1A2) as determinants of habitual caffeine consumption.	Caffeine consumption	47,431 European ancestry individuals	NA	7p21.1	AHR	rs4410790-T	0.38	2E-19		0.15	[0.11-0.19] mg/day decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
716	chr7	17284988	17284989	rs10277582	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Coffee consumption (cups per day)	11,862 African American individuals, 15,837 Hispanic/Latino individuals, 3,764 Asian ancestry individuals, 3,857 Native Hawaiian ancestry individuals, 582 Native American ancestry individuals	NA	7p21.1	NR	rs10277582-?	NR	2E-10		0.02923515	[0.02-0.038] unit decrease	Illumina [32504442] (imputed)	N
716	chr7	17285866	17285867	rs10281571	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Coffee consumption (cups per day)	11,862 African American individuals, 15,837 Hispanic/Latino individuals, 3,764 Asian ancestry individuals, 3,857 Native Hawaiian ancestry individuals, 582 Native American ancestry individuals	NA	7p21.1	NR	rs10281571-?	NR	6E-9		0.02623358	[0.017-0.035] unit decrease	Illumina [32504442] (imputed)	N
716	chr7	17287105	17287106	rs6968554	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	7p21.1		rs6968554-G	NR	3E-9		0.0125	[0.0084-0.0166] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
716	chr7	17287105	17287106	rs6968554	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Coffee consumption (cups per day)	11,862 African American individuals, 15,837 Hispanic/Latino individuals, 3,764 Asian ancestry individuals, 3,857 Native Hawaiian ancestry individuals, 582 Native American ancestry individuals	NA	7p21.1	NR	rs6968554-?	NR	5E-13		0.0281684	[0.021-0.036] unit increase	Illumina [32504442] (imputed)	N
716	chr7	17287105	17287106	rs6968554	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	7p21.1	AHR	rs6968554-A	0.4256	1E-12		0.0019	[0.0013-0.0025] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
716	chr7	17287105	17287106	rs6968554	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	7p21.1	NA	rs6968554-A	0.3871	2E-10		0.0107	[0.0074-0.014] unit decrease	NR [~ 27400000] (imputed)	N
716	chr7	17287105	17287106	rs6968554	27702941	Cornelis MC	2016-10-03	Hum Mol Genet	Genome-wide association study of caffeine metabolites provides new insights to caffeine metabolism and dietary caffeine-consumption behavior.	Caffeine metabolism (plasma 1,7-dimethylxanthine (paraxanthine) to 1,3,7-trimethylxanthine (caffeine) ratio)	5,323 European ancestry individuals	824 European ancestry individuals	7p21.1	AHR	rs6968554-A	0.37	3E-17		8.44	Z-score decrease	Illumina [~ 31000000] (imputed)	N
716	chr7	17287105	17287106	rs6968554	27702941	Cornelis MC	2016-10-03	Hum Mol Genet	Genome-wide association study of caffeine metabolites provides new insights to caffeine metabolism and dietary caffeine-consumption behavior.	Caffeine metabolism (plasma 1,3,7-trimethylxanthine (caffeine) level)	9,054 European ancestry individuals	822 European ancestry individuals	7p21.1	AHR	rs6968554-A	0.37	5E-13		7.22	Z-score increase	Illumina [~ 31000000] (imputed)	N
716	chr7	17287105	17287106	rs6968554	25288136	Cornelis MC	2014-10-07	Mol Psychiatry	Genome-wide meta-analysis identifies six novel loci associated with habitual coffee consumption.	Coffee consumption	17,479 European ancestry high consumption individuals, 31,049 European ancestry no or low consumption individuals	6,497 European ancestry high consumption individuals, 432 African American high consumption individuals, 6,972 European ancestry no or low consumption individuals, 3,413 African American no or low consumption individuals	7p21.1	AHR	rs6968554-A	0.39	7E-15		0.2	[0.14-0.26] unit decrease	Affymetrix, Illumina [2376205] (imputed)	N
716	chr7	17287105	17287106	rs6968554	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	7p21.1	AHR	rs6968554-A	0.38	9E-14	(caffeine)	0.064	[0.046-0.082] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
716	chr7	17287268	17287269	rs6968865	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	7p21.1	NR	rs6968865-A	0.372116	4E-10		0.0122478	[0.0084-0.0161] unit decrease	Affymetrix [15000001]	N
716	chr7	17287268	17287269	rs6968865	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	7p21.1	AHR	rs6968865-A	0.372574	8E-14		0.0152068	[0.011-0.019] unit decrease	Affymetrix [NR] (imputed)	N
716	chr7	17287268	17287269	rs6968865	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Coffee consumption (cups per day)	11,862 African American individuals, 15,837 Hispanic/Latino individuals, 3,764 Asian ancestry individuals, 3,857 Native Hawaiian ancestry individuals, 582 Native American ancestry individuals	NA	7p21.1	NR	rs6968865-?	NR	4E-15		0.02987925	[0.022-0.037] unit increase	Illumina [32504442] (imputed)	N
716	chr7	17287268	17287269	rs6968865	21357676	Sulem P	2011-02-28	Hum Mol Genet	Sequence variants at CYP1A1-CYP1A2 and AHR associate with coffee consumption.	Coffee consumption	5,840 European ancestry individuals, 771 Sorbian (founder/genetic isolate) individuals	4,050 European ancestry individuals	7p21.1	AHR	rs6968865-T	0.593	2E-11		0.26	[0.15-0.36] cups per day increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
716	chr7	17287997	17287998	rs2106727	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	7p21.1		rs2106727-G	NR	1E-35		0.0255	[0.022-0.029] unit decrease	Affymetrix, Illumina [20535842] (imputed)	N
716	chr7	17287997	17287998	rs2106727	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	7p21.1		rs2106727-G	NR	8E-18		0.0144	[0.011-0.018] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
716	chr7	17287997	17287998	rs2106727	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	7p21.1	NR	rs2106727-G	0.636784	3E-8		0.00596459	[0.0036-0.0083] unit increase	Affymetrix [16582621] (imputed)	N
716	chr7	17287997	17287998	rs2106727	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Coffee consumption (cups per day)	11,862 African American individuals, 15,837 Hispanic/Latino individuals, 3,764 Asian ancestry individuals, 3,857 Native Hawaiian ancestry individuals, 582 Native American ancestry individuals	NA	7p21.1	NR	rs2106727-?	NR	2E-11		0.02594639	[0.018-0.034] unit increase	Illumina [32504442] (imputed)	N
717	chr7	17303777	17303778	rs10275488	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Coffee consumption (cups per day)	11,862 African American individuals, 15,837 Hispanic/Latino individuals, 3,764 Asian ancestry individuals, 3,857 Native Hawaiian ancestry individuals, 582 Native American ancestry individuals	NA	7p21.1	NR	rs10275488-?	NR	1E-9		0.02801235	[0.019-0.037] unit decrease	Illumina [32504442] (imputed)	N
717	chr7	17303777	17303778	rs10275488	27702941	Cornelis MC	2016-10-03	Hum Mol Genet	Genome-wide association study of caffeine metabolites provides new insights to caffeine metabolism and dietary caffeine-consumption behavior.	Caffeine metabolism (plasma 1,7-dimethylxanthine (paraxanthine) to 1,3,7-trimethylxanthine (caffeine) ratio)	5,323 European ancestry individuals	824 European ancestry individuals	7p21.1	AHR	rs10275488-T	0.1	2E-9		5.98	Z-score decrease	Illumina [~ 31000000] (imputed)	N
717	chr7	17303777	17303778	rs10275488	27702941	Cornelis MC	2016-10-03	Hum Mol Genet	Genome-wide association study of caffeine metabolites provides new insights to caffeine metabolism and dietary caffeine-consumption behavior.	Caffeine metabolism (plasma 1,3,7-trimethylxanthine (caffeine) level)	9,054 European ancestry individuals	822 European ancestry individuals	7p21.1	AHR	rs10275488-T	0.1	5E-9		5.85	Z-score increase	Illumina [~ 31000000] (imputed)	N
717	chr7	17309278	17309279	rs12670403	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Coffee consumption (cups per day)	11,862 African American individuals, 15,837 Hispanic/Latino individuals, 3,764 Asian ancestry individuals, 3,857 Native Hawaiian ancestry individuals, 582 Native American ancestry individuals	NA	7p21.1	NR	rs12670403-?	NR	4E-9		0.02280859	[0.015-0.03] unit increase	Illumina [32504442] (imputed)	N
717	chr7	17309278	17309279	rs12670403	21886157	Suhre K	2011-08-31	Nature	Human metabolic individuality in biomedical and pharmaceutical research.	Metabolic traits	2,820 European ancestry individuals	NA	7p21.1	AHR	rs12670403-C	0.487	5E-15	(caffeine/quinate + 3 other traits)	0.294	[NR] unit increase	Affymetrix, Illumina [534665]	N
717	chr7	17318311	17318312	rs13236243	23834954	Kobayashi D	2013-07-08	Mol Pain	Genome-wide association study of sensory disturbances in the inferior alveolar nerve after bilateral sagittal split ramus osteotomy.	Sensory disturbances after bilateral sagittal split ramus osteotomy	Up to 105 individuals	Up to 200 individuals	7p21.1	LOC729939	rs13236243-?	NR	4E-6	(Hypoesthesia, Recessive)			Illumina [243229]	N
717	chr7	17324623	17324624	rs2892838	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Coffee consumption (cups per day)	11,862 African American individuals, 15,837 Hispanic/Latino individuals, 3,764 Asian ancestry individuals, 3,857 Native Hawaiian ancestry individuals, 582 Native American ancestry individuals	NA	7p21.1	NR	rs2892838-?	NR	9E-6		0.01760686	[0.0099-0.0254] unit increase	Illumina [32504442] (imputed)	N
717	chr7	17324623	17324624	rs2892838	27702941	Cornelis MC	2016-10-03	Hum Mol Genet	Genome-wide association study of caffeine metabolites provides new insights to caffeine metabolism and dietary caffeine-consumption behavior.	Caffeine metabolism (plasma 1,7-dimethylxanthine (paraxanthine) to 1,3,7-trimethylxanthine (caffeine) ratio)	5,323 European ancestry individuals	824 European ancestry individuals	7p21.1	AHR	rs2892838-A	0.56	2E-9		6.01	Z-score increase	Illumina [~ 31000000] (imputed)	N
717	chr7	17324623	17324624	rs2892838	27702941	Cornelis MC	2016-10-03	Hum Mol Genet	Genome-wide association study of caffeine metabolites provides new insights to caffeine metabolism and dietary caffeine-consumption behavior.	Caffeine metabolism (plasma 1,3,7-trimethylxanthine (caffeine) level)	9,054 European ancestry individuals	822 European ancestry individuals	7p21.1	AHR	rs2892838-A	0.56	5E-6		4.55	Z-score decrease	Illumina [~ 31000000] (imputed)	N
717	chr7	17330117	17330118	rs62444550	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Coffee consumption (cups per day)	11,862 African American individuals, 15,837 Hispanic/Latino individuals, 3,764 Asian ancestry individuals, 3,857 Native Hawaiian ancestry individuals, 582 Native American ancestry individuals	NA	7p21.1	NR	rs62444550-?	NR	6E-6		0.01761995	[0.01-0.0253] unit increase	Illumina [32504442] (imputed)	N
717	chr7	17334898	17334899	rs4719497	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Coffee consumption	335,909 European ancestry individuals	39,924 European ancestry individuals	7p21.1	AHR	rs4719497-T	0.8652	2E-8		0.0121	[0.0078-0.0164] unit increase	Affymetrix [~ 7740000] (imputed)	N
717	chr7	17360520	17360521	rs17137566	29317604	Liu D	2018-01-10	Transl Psychiatry	Beta-defensin 1, aryl hydrocarbon receptor and plasma kynurenine in major depressive disorder: metabolomics-informed genomics.	Plasma kynurenine levels in major depressive disorder	290 European ancestry individuals	NA	7p21.1	AHR	rs17137566-C	0.17	6E-6		0.47	[NR] unit decrease	Illumina [~ 7500000] (imputed)	N
717	chr7	17385506	17385506	rs11400459	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Coffee consumption (cups per day)	11,862 African American individuals, 15,837 Hispanic/Latino individuals, 3,764 Asian ancestry individuals, 3,857 Native Hawaiian ancestry individuals, 582 Native American ancestry individuals	NA	7p21.1	NR	rs11400459-?	NR	1E-6		0.01887579	[0.011-0.026] unit increase	Illumina [32504442] (imputed)	N
717	chr7	17385506	17385506	rs11400459	27702941	Cornelis MC	2016-10-03	Hum Mol Genet	Genome-wide association study of caffeine metabolites provides new insights to caffeine metabolism and dietary caffeine-consumption behavior.	Caffeine metabolism (plasma 1,7-dimethylxanthine (paraxanthine) to 1,3,7-trimethylxanthine (caffeine) ratio)	5,323 European ancestry individuals	824 European ancestry individuals	7p21.1	AHR	rs11400459-A	0.64	5E-10		6.23	Z-score increase	Illumina [~ 31000000] (imputed)	N
717	chr7	17385506	17385506	rs11400459	27702941	Cornelis MC	2016-10-03	Hum Mol Genet	Genome-wide association study of caffeine metabolites provides new insights to caffeine metabolism and dietary caffeine-consumption behavior.	Caffeine metabolism (plasma 1,7-dimethylxanthine (paraxanthine) to 1,3,7-trimethylxanthine (caffeine) ratio)	5,323 European ancestry individuals	824 European ancestry individuals	7p21.1	AHR	rs11400459-A	0.64	5E-10		6.23	Z-score increase	Illumina [~ 31000000] (imputed)	N
717	chr7	17385506	17385506	rs11400459	27702941	Cornelis MC	2016-10-03	Hum Mol Genet	Genome-wide association study of caffeine metabolites provides new insights to caffeine metabolism and dietary caffeine-consumption behavior.	Caffeine metabolism (plasma 1,3,7-trimethylxanthine (caffeine) level)	9,054 European ancestry individuals	822 European ancestry individuals	7p21.1	AHR	rs11400459-A	0.64	6E-6		4.52	Z-score decrease	Illumina [~ 31000000] (imputed)	N
717	chr7	17396746	17396746	rs10683220	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Coffee consumption (cups per day)	11,862 African American individuals, 15,837 Hispanic/Latino individuals, 3,764 Asian ancestry individuals, 3,857 Native Hawaiian ancestry individuals, 582 Native American ancestry individuals	NA	7p21.1	NR	rs10683220-?	NR	1E-7		0.02023615	[0.013-0.028] unit increase	Illumina [32504442] (imputed)	N
717	chr7	17396746	17396746	rs10683220	27702941	Cornelis MC	2016-10-03	Hum Mol Genet	Genome-wide association study of caffeine metabolites provides new insights to caffeine metabolism and dietary caffeine-consumption behavior.	Caffeine metabolism (plasma 1,7-dimethylxanthine (paraxanthine) to 1,3,7-trimethylxanthine (caffeine) ratio)	5,323 European ancestry individuals	824 European ancestry individuals	7p21.1	AHR	rs10683220-G	0.63	1E-9		6.11	Z-score increase	Illumina [~ 31000000] (imputed)	N
717	chr7	17396746	17396746	rs10683220	27702941	Cornelis MC	2016-10-03	Hum Mol Genet	Genome-wide association study of caffeine metabolites provides new insights to caffeine metabolism and dietary caffeine-consumption behavior.	Caffeine metabolism (plasma 1,7-dimethylxanthine (paraxanthine) to 1,3,7-trimethylxanthine (caffeine) ratio)	5,323 European ancestry individuals	824 European ancestry individuals	7p21.1	AHR	rs10683220-G	0.63	1E-9		6.11	Z-score increase	Illumina [~ 31000000] (imputed)	N
717	chr7	17396746	17396746	rs10683220	27702941	Cornelis MC	2016-10-03	Hum Mol Genet	Genome-wide association study of caffeine metabolites provides new insights to caffeine metabolism and dietary caffeine-consumption behavior.	Caffeine metabolism (plasma 1,3,7-trimethylxanthine (caffeine) level)	9,054 European ancestry individuals	822 European ancestry individuals	7p21.1	AHR	rs10683220-G	0.63	2E-6		4.7	Z-score decrease	Illumina [~ 31000000] (imputed)	N
717	chr7	17401026	17401027	rs7791070	31837886	Kennedy OJ	2019-12-02	Am J Kidney Dis	Coffee Consumption and Kidney Function: A Mendelian Randomization Study.	Coffee consumption (cups per day)	227,666 British ancestry individuals	NA	7p21.1	AHR	rs7791070-C	0.234	2E-28		0.076	NR cups per day decrease	NR [NR]	N
717	chr7	17401026	17401027	rs7791070	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter non-alcoholic beverage consumption	85,852 European ancestry individuals	39,924 European ancestry individuals	7p21.1	KCCAT333	rs7791070-T	0.7663	4E-20		0.0175	[0.014-0.021] unit increase	Affymetrix [~ 7740000] (imputed)	N
717	chr7	17419696	17419697	rs17645813	31837886	Kennedy OJ	2019-12-02	Am J Kidney Dis	Coffee Consumption and Kidney Function: A Mendelian Randomization Study.	Coffee consumption (cups per day)	227,666 British ancestry individuals	NA	7p21.1	KCCAT333	rs17645813-A	0.077	3E-11		0.073	NR cups per day decrease	NR [NR]	N
718	chr7	17439172	17439173	rs113896775	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	7p21.1	NR	rs113896775-A	NR	2E-11		0.0413	[0.029-0.053] unit decrease	Affymetrix [9000000] (imputed)	N
718	chr7	17439608	17439609	rs6461314	31837886	Kennedy OJ	2019-12-02	Am J Kidney Dis	Coffee Consumption and Kidney Function: A Mendelian Randomization Study.	Coffee consumption (cups per day)	227,666 British ancestry individuals	NA	7p21.1	KCCAT333	rs6461314-G	0.112	1E-8		0.053	NR cups per day increase	NR [NR]	N
718	chr7	17442678	17442679	rs1077773	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Ulcerative colitis	12,366 European and unknown ancestry cases, 33,609 European and unknown ancestry controls	NA	7p21.1	Intergenic	rs1077773-?		6E-6				Illumina [9578670] (imputed)	N
718	chr7	17442678	17442679	rs1077773	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	7p21.1	AHR	rs1077773-A	0.52	6E-9	(EA)	1.0747931		Affymetrix, Illumina [~ 9000000] (imputed)	N
718	chr7	17442678	17442679	rs1077773	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	7p21.1	AHR	rs1077773-A	0.52	6E-7	(EA)	1.0502108		Affymetrix, Illumina [~ 9000000] (imputed)	N
718	chr7	17443198	17443199	rs12699844	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Coffee consumption	335,909 European ancestry individuals	39,924 European ancestry individuals	7p21.1	KCCAT333	rs12699844-C	0.468	2E-16		0.0122	[0.0093-0.0151] unit increase	Affymetrix [~ 7740000] (imputed)	N
718	chr7	17445705	17445706	rs10259316	31959922	Matoba N	2020-01-20	Nat Hum Behav	GWAS of 165,084 Japanese individuals identified nine loci associated with dietary habits.	Coffee consumption	152,634 Japanese ancestry individuals	NA	7p21.1	LOC102659288	rs10259316-?	NR	5E-17	(conditioned on rs4410790, rs1349140)	0.109	[0.084-0.134] unit decrease	Illumina [6108828] (imputed)	N
718	chr7	17502589	17502590	rs10225144	28247064	Deming Y	2017-02-28	Acta Neuropathol	Genome-wide association study identifies four novel loci associated with Alzheimer's endophenotypes and disease modifiers.	Cerebrospinal P-tau181p levels	3,146 individuals	NA	7p21.1	LOC102659288	rs10225144-C	0.215	7E-6		0.028	[0.016-0.04] unit increase	Illumina [7358575] (imputed)	N
718	chr7	17516788	17516789	rs192293583	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	7p21.1	NR	rs192293583-?	NR	8E-6		0.665	[0.38-0.95] unit increase	Illumina [at least 560000] (imputed)	N
718	chr7	17519260	17519261	rs6949509	31837886	Kennedy OJ	2019-12-02	Am J Kidney Dis	Coffee Consumption and Kidney Function: A Mendelian Randomization Study.	Coffee consumption (cups per day)	227,666 British ancestry individuals	NA	7p21.1	LOC101927630	rs6949509-G	0.435	2E-12		0.042	NR cups per day decrease	NR [NR]	N
718	chr7	17525701	17525702	rs652187	33382417	Batai K	2020-12-31	J Nutr	Genome-Wide Association Study of Response to Selenium Supplementation and Circulating Selenium Concentrations in Adults of European Descent.	Response to selenium supplementation (change in plasma selenium concentration)	428 European ancestry individuals	NA	7p21.1	LOC101927630	rs652187-?	0.426	7E-6		11.68	[6.65-16.71] unit increase	Illumina [7663546] (imputed)	N
718	chr7	17544308	17544309	rs1349138	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7p21.1	NR	rs1349138-A	0.01394	9E-9	(MYO1B)	0.1264	NR unit increase	Illumina [1671387] (imputed)	N
718	chr7	17545963	17545964	rs73071153	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7p21.1	NR	rs73071153-A	0.03136	2E-8	(TYMP)	0.3485	NR unit increase	Illumina [1671387] (imputed)	N
718	chr7	17551901	17551902	rs17706320	31837886	Kennedy OJ	2019-12-02	Am J Kidney Dis	Coffee Consumption and Kidney Function: A Mendelian Randomization Study.	Coffee consumption (cups per day)	227,666 British ancestry individuals	NA	7p21.1	LOC101927630	rs17706320-C	0.342	5E-16		0.05	NR cups per day decrease	NR [NR]	N
718	chr7	17554179	17554180	rs7808662	33232274	Mohammadnejad A	2020-11-24	Aging (Albany NY)	Generalized correlation coefficient for genome-wide association analysis of cognitive ability in twins.	Cognitive function (generalized correlation coefficient)	278 Chinese ancestry dizygotic twins	NA	7p21.1	NR	rs7808662-?	NR	6E-7			[NR]	Illumina [5432814] (imputed)	N
718	chr7	17561582	17561583	rs10499504	20195266	Adkins DE	2010-03-02	Mol Psychiatry	Genomewide pharmacogenomic study of metabolic side effects to antipsychotic drugs.	Response to antipsychotic treatment	421 European ancestry, 214 African American, and 103 cases	NA	7p21.1	intergenic	rs10499504-?	0.11	4E-7	(clozapine-total cholesterol)			Affymetrix [492900]	N
718	chr7	17561650	17561651	rs11768350	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Tea consumption	336,898 European ancestry individuals	39,924 European ancestry individuals	7p21.1	LOC101927630	rs11768350-T	0.8423	5E-6		0.0095	[0.0054-0.0136] unit increase	Affymetrix [~ 7740000] (imputed)	N
718	chr7	17562858	17562859	rs1349140	31959922	Matoba N	2020-01-20	Nat Hum Behav	GWAS of 165,084 Japanese individuals identified nine loci associated with dietary habits.	Coffee consumption	152,634 Japanese ancestry individuals	NA	7p21.1	LOC101927630	rs1349140-?	NR	2E-18	(conditioned on rs4410790)	0.155	[0.12-0.19] unit increase	Illumina [6108828] (imputed)	N
718	chr7	17562951	17562952	rs73073176	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Coffee consumption	335,909 European ancestry individuals	39,924 European ancestry individuals	7p21.1	LOC101927630	rs73073176-C	0.8701	2E-25		0.023	[0.019-0.027] unit increase	Affymetrix [~ 7740000] (imputed)	N
719	chr7	17563649	17563650	rs17137805	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Non-albumin protein levels	98,538 Japanese ancestry individuals	NA	7p21.1	LOC101927630	rs17137805-?	NR	3E-8		0.02504	[0.016-0.034] unit decrease novel	Illumina [6108953] (imputed)	N
719	chr7	17566663	17566664	rs1031275	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	7p21.1		rs1031275-T	0.235888	5E-9		0.0285791	[0.019-0.038] unit increase	NR [11722792] (imputed)	N
719	chr7	17593485	17593486	rs13233604	31837886	Kennedy OJ	2019-12-02	Am J Kidney Dis	Coffee Consumption and Kidney Function: A Mendelian Randomization Study.	Coffee consumption (cups per day)	227,666 British ancestry individuals	NA	7p21.1	LOC101927630	rs13233604-A	0.172	5E-12		0.058	NR cups per day decrease	NR [NR]	N
719	chr7	17610455	17610456	rs12699874	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Degraded stimulus continuous performance test score	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	7p21.1	intergenic	rs12699874-C	NR	5E-6		0.17831963	[0.1-0.25] unit increase	Illumina [> 6200000] (imputed)	N
719	chr7	17612384	17612385	rs7777054	26379185	Garcia-Etxebarria K	2015-09-17	PLoS One	No Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity.	Severe influenza A (H1N1) infection	49 European ancestry severe cases, 549 European ancestry population controls	NA	7p21.1	SNX13, AHR	rs7777054-?	0.0	7E-11				Affymetrix [547296]	N
719	chr7	17628489	17628490	rs76128631	33549134	Adolphe C	2021-02-06	Genome Med	Genetic and functional interaction network analysis reveals global enrichment of regulatory T cell genes influencing basal cell carcinoma susceptibility.	Basal cell carcinoma	17,416 European ancestry cases, 375,455 European ancestry controls	NA	7p21.1	LOC101927630	rs76128631-T	0.209867	2E-8		0.073857054	[0.048-0.1] unit increase	Affymetrix [7260263] (imputed)	N
719	chr7	17628489	17628490	rs76128631	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Keratinocyte cancer (MTAG)	at least 18,538 European ancestry cases, at least 340,302 European ancestry controls	NA	7p21.1	AC017060.1	rs76128631-T	0.213805	3E-10		1.07	[1.04-1.09]	Affymetrix [7600000] (imputed)	N
719	chr7	17632763	17632764	rs17137933	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Basal cell carcinoma	31,787 European ancestry cases, 619,351 European ancestry controls	NA	7p21.1	AC017060.1	rs17137933-T	0.189051	2E-10		1.07	[1.05-1.09]	Affymetrix, Illumina [up to 9061544] (imputed)	N
719	chr7	17662548	17662549	rs12534456	28394258	Wild PS	2017-04-10	J Clin Invest	Large-scale genome-wide analysis identifies genetic variants associated with cardiac structure and function.	Left  ventricle systolic dysfunction	30,201 European ancestry individuals	NA	7p21.1	NR	rs12534456-T	0.0487	6E-6		0.3726	[0.21-0.53] unit increase	Affymetrix, Illumina [at least 283291] (imputed)	N
720	chr7	17713449	17713450	rs10253857	33111402	Tan MMX	2020-10-28	Mov Disord	Genome-Wide Association Studies of Cognitive and Motor Progression in Parkinson's Disease.	Parkinson's disease progression (composite)	2,755 individuals	NA	7p21.1	SNX13	rs10253857-T	0.22	4E-6		0.23	[0.13-0.33] unit decrease	Illumina [5918868] (imputed)	N
720	chr7	17722997	17722998	rs77202337	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Coronary artery disease in hypertension	816 Korean ancestry cases, 15,488 Korean ancestry controls	NA	7p21.1		rs77202337-T	0.08841	7E-6		1.433	[1.225-1.675]	Affymetrix [7975321] (imputed)	N
720	chr7	17727579	17727580	rs12535608	26584805	Dorajoo R	2015-11-19	Genes Nutr	A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.	Plasma omega-6 polyunsaturated fatty acid levels (gamma-linolenic acid)	717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls	NA	7p21.1	NR	rs12535608-G	0.8205	6E-7		0.1444	[0.088-0.201] unit increase	Illumina [up to 1980188] (imputed)	N
720	chr7	17734911	17734912	rs6461337	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x long total sleep time interaction (2df test)	2,913 African American long sleepers, 358 Chinese ancestry long sleepers, 110 Asian ancestry long sleepers, 7,583 European ancestry long sleepers, 1,036 Hispanic/Latino long sleepers, up to 11,862 African American controls, 1,432 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,744 European ancestry controls, 4,066 Hispanic/Latino controls	at least 214 African American long sleepers, 616 East Asian ancestry long sleepers, up to 6,657 European ancestry long sleepers, 2,457 Hispanic long sleepers, at least 913 African American controls, 2,517 East Asian ancestry controls, up to 26,868 European ancestry controls, 9,870 Hispanic controls	7p21.1	SNX13	rs6461337-?	NR	2E-9	(EA)	0.5881	[0.19-0.98] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
720	chr7	17734911	17734912	rs6461337	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x long total sleep time interaction (1df test)	2,913 African American long sleepers, 358 Chinese ancestry long sleepers, 110 Asian ancestry long sleepers, 7,583 European ancestry long sleepers, 1,036 Hispanic/Latino long sleepers, up to 11,862 African American controls, 1,432 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,744 European ancestry controls, 4,066 Hispanic/Latino controls	at least 214 African American long sleepers, 616 East Asian ancestry long sleepers, up to 6,657 European ancestry long sleepers, 2,457 Hispanic long sleepers, at least 913 African American controls, 2,517 East Asian ancestry controls, up to 26,868 European ancestry controls, 9,870 Hispanic controls	7p21.1	SNX13	rs6461337-?	NR	3E-6	(EA)	2.234	[1.29-3.18] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
720	chr7	17751231	17751232	rs61578235	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	7p21.1		rs61578235-?	NR	7E-11				NR [~ 8900000] (imputed)	N
720	chr7	17768276	17768277	rs13226195	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	7p21.1		rs13226195-?	NR	8E-13				NR [~ 8900000] (imputed)	N
720	chr7	17769989	17769990	rs7778305	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Tea consumption	336,898 European ancestry individuals	39,924 European ancestry individuals	7p21.1	SNX13	rs7778305-T	0.4804	7E-7		0.0076	[0.0047-0.0105] unit increase	Affymetrix [~ 7740000] (imputed)	N
720	chr7	17792340	17792341	rs55728567	33331911	Freidin MB	2020-12-17	Rheumatology (Oxford)	An association between chronic widespread pain and the gut microbiome.	Chronic widespread musculoskeletal pain	up to 531 European or unknown ancestry cases, up to 2,742 European or unknown ancestry controls	NA	7p21.1	AC006482.1, SNX13	rs55728567-T	0.141	5E-6		0.0658	[0.038-0.094] unit increase	NR [4841651] (imputed)	N
720	chr7	17803237	17803238	rs2537584	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	7p21.1		rs2537584-?	NR	1E-8				NR [~ 8900000] (imputed)	N
720	chr7	17812738	17812739	rs2110015	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	7p21.1		rs2110015-T	NR	9E-26		0.0218	[0.018-0.026] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
720	chr7	17813613	17813614	rs2254594	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	7p21.1	intergenic	rs2254594-A	0.5352	3E-12		0.02475739	[0.018-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
720	chr7	17814004	17814005	rs2723519	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p21.1	NR	rs2723519-G	0.584499	2E-33				Affymetrix, Illumina [20825802] (imputed)	N
720	chr7	17814164	17814165	rs1404417	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p21.1	NR	rs1404417-A	0.582558	7E-25				Affymetrix, Illumina [24246363] (imputed)	N
720	chr7	17814164	17814165	rs1404417	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	7p21.1	NR	rs1404417-A	0.537059	3E-24		0.01849	[0.015-0.022] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
720	chr7	17814164	17814165	rs1404417	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	7p21.1	NR	rs1404417-A	0.536228	5E-33		0.02312	[0.019-0.027] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
720	chr7	17814201	17814202	rs2723517	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	7p21.1	NR	rs2723517-C	0.535968	8E-11		0.014580169	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
720	chr7	17814535	17814536	rs2537594	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	7p21.1		rs2537594-A	0.536546	4E-28		0.024297297	[0.02-0.029] unit increase	Affymetrix [93095623] (imputed)	N
720	chr7	17814535	17814536	rs2537594	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p21.1	NR	rs2537594-G	0.457046	2E-41				Affymetrix, Illumina [22063850] (imputed)	N
720	chr7	17814535	17814536	rs2537594	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	7p21.1	NR	rs2537594-G	0.461922	2E-45		0.026628	[0.023-0.03] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
720	chr7	17814535	17814536	rs2537594	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	7p21.1		rs2537594-?	NR	2E-35				NR [~ 8900000] (imputed)	N
720	chr7	17814535	17814536	rs2537594	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	7p21.1		rs2537594-?	NR	3E-37				NR [~ 8900000] (imputed)	N
720	chr7	17814535	17814536	rs2537594	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	7p21.1	intergenic	rs2537594-A	0.5347	3E-10		0.02248585	[0.016-0.029] unit increase	Affymetrix [~ 2500000] (imputed)	N
720	chr7	17814547	17814548	rs2723514	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	7p21.1		rs2723514-A	0.539426	2E-13		0.015797	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
720	chr7	17814547	17814548	rs2723514	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p21.1	NR	rs2723514-G	0.589775	1E-10				Affymetrix, Illumina [21126107] (imputed)	N
720	chr7	17814547	17814548	rs2723514	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	7p21.1	NR	rs2723514-G	0.539906	9E-13		0.014353	[0.01-0.018] SD unit increase	Affymetrix, Illumina [50282193] (imputed)	N
720	chr7	17814644	17814645	rs3839706	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	7p21.1		rs3839706-A	NR	3E-18		0.0182	[0.014-0.022] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
720	chr7	17814644	17814645	rs3839706	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	7p21.1		rs3839706-A	0.537234	2E-34		0.04815145	[0.04-0.056] unit decrease	Affymetrix [93095623] (imputed)	N
720	chr7	17814644	17814645	rs3839706	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	7p21.1		rs3839706-A	0.537237	2E-18		0.0187109	[0.015-0.023] unit increase	Affymetrix [93095623] (imputed)	N
720	chr7	17814887	17814888	rs2723513	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	7p21.1		rs2723513-A	0.461	1E-16		0.09	[-0.11--0.07] % decrease	Affymetrix [NR] (imputed)	N
720	chr7	17816638	17816639	rs2723510	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	7p21.1		rs2723510-T	0.447646	2E-9		0.023764137	[0.016-0.031] unit increase	Affymetrix [93095623] (imputed)	N
720	chr7	17817036	17817037	rs2723509	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	7p21.1	intergenic	rs2723509-A	0.4843	7E-9		0.0163	[0.011-0.022] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
721	chr7	17837858	17837859	rs2691586	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x short total sleep time interaction (2df test)	3,007 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,474 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, up to 11,901 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,567 European ancestry controls, 4,047 Hispanic/Latino controls	up to 221 African American short sleepers, 629 East Asian ancestry short sleepers, up to 9,585 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 2,504 East Asian ancestry controls, up to 38,027 European ancestry controls, 10,061 Hispanic controls	7p21.1	SNX13	rs2691586-?	NR	5E-12		0.006586	[0.0047-0.0085] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
721	chr7	17839337	17839338	rs2723553	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	7p21.1		rs2723553-C	NR	1E-27		0.023	[0.019-0.027] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
721	chr7	17860660	17860661	rs2723552	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Lactate dehydrogenase levels	126,319 Japanese ancestry individuals	NA	7p21.1	SNX13	rs2723552-?	NR	5E-9		0.02655	[0.018-0.035] unit decrease novel	Illumina [6108953] (imputed)	N
721	chr7	17863632	17863633	rs2723555	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	7p21.1	NR	rs2723555-T	0.488453	4E-8		0.00644613	[0.004-0.0089] unit increase	Affymetrix [16585854] (imputed)	N
721	chr7	17863632	17863633	rs2723555	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	7p21.1	NR	rs2723555-T	0.488453	3E-6		0.00613009	[0.0033-0.0089] unit increase	Affymetrix [16585866] (imputed)	N
721	chr7	17888586	17888587	rs2723572	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	7p21.1	NR	rs2723572-T	0.487724	3E-11		0.00504647	[0.0034-0.0067] unit increase	Affymetrix [16582909] (imputed)	N
721	chr7	17888586	17888587	rs2723572	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	7p21.1	NR	rs2723572-T	0.487724	2E-9		0.00529571	[0.0035-0.0071] unit increase	Affymetrix [16582965] (imputed)	N
721	chr7	17908129	17908130	rs2389858	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	7p21.1		rs2389858-T	0.505804	4E-8		0.0221542	[0.014-0.03] unit decrease	NR [11722792] (imputed)	N
721	chr7	17908129	17908130	rs2389858	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	7p21.1		rs2389858-T	0.505787	5E-9		0.0240324	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
721	chr7	17908129	17908130	rs2389858	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	7p21.1		rs2389858-A	NR	6E-9		0.0113	[0.0076-0.015] unit decrease	Affymetrix, Illumina [20536134] (imputed)	N
721	chr7	17908129	17908130	rs2389858	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	7p21.1	SNX13	rs2389858-A	0.4945	2E-18		0.0166	[0.013-0.02] unit increase	Affymetrix [18391927] (imputed)	N
721	chr7	17911037	17911038	rs10282707	31178129	Spracklen CN	2019-06-06	Am J Hum Genet	Exome-Derived Adiponectin-Associated Variants Implicate Obesity and Lipid Biology.	Adiponectin levels	up to 60,465 European ancestry individuals, up to 2,568 East Asian ancestry individuals, up to 3,271 African American individuals, up to 1,435 Hispanic individuals	NA	7p21.1	SNX13	rs10282707-T	0.383180330256976	8E-12		0.042978615	unit decrease	Illumina [265780]	N
721	chr7	17911751	17911752	rs1917368	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	7p21.1		rs1917368-T	NR	2E-25		0.0203	[0.017-0.024] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
721	chr7	17911751	17911752	rs1917368	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	7p21.1	SNX13	rs1917368-G	0.61	4E-25		10.4	z-score increase	Affymetrix [4314223] (imputed)	N
721	chr7	17911751	17911752	rs1917368	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	7p21.1	SNX13	rs1917368-T	0.465	2E-24		0.028	[0.023-0.033] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
721	chr7	17914599	17914600	rs6461354	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	7p21.1		rs6461354-T	0.4	1E-10		6.47	z score increase	Affymetrix [9061022] (imputed)	N
721	chr7	17914599	17914600	rs6461354	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	7p21.1	NR	rs6461354-T	0.3962	2E-11				NR [9056863] (imputed)	N
721	chr7	17914599	17914600	rs6461354	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	7p21.1	SNX13	rs6461354-T	NR	7E-6				Affymetrix, Illumina [NR] (imputed)	N
721	chr7	17914599	17914600	rs6461354	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	7p21.1	SNX13	rs6461354-T	NR	9E-6		0.008	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
721	chr7	17914599	17914600	rs6461354	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	7p21.1	SNX13	rs6461354-T	NR	4E-8	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
721	chr7	17914599	17914600	rs6461354	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	7p21.1	SNX13	rs6461354-T	NR	2E-19	(EA)			Affymetrix, Illumina [NR] (imputed)	N
721	chr7	17914599	17914600	rs6461354	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	7p21.1	SNX13	rs6461354-T	NR	1E-28				Affymetrix, Illumina [NR] (imputed)	N
721	chr7	17914599	17914600	rs6461354	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	7p21.1	SNX13	rs6461354-T	NR	4E-29				Affymetrix, Illumina [NR] (imputed)	N
721	chr7	17914599	17914600	rs6461354	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	7p21.1	SNX13	rs6461354-T	NR	3E-7	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
721	chr7	17914599	17914600	rs6461354	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	7p21.1	SNX13	rs6461354-T	NR	3E-22	(EA)			Affymetrix, Illumina [NR] (imputed)	N
721	chr7	17914599	17914600	rs6461354	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	7p21.1	SNX13	rs6461354-T	NR	8E-18		0.007	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
721	chr7	17914599	17914600	rs6461354	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	7p21.1	SNX13	rs6461354-T	NR	3E-7	(Asian)	0.006	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
721	chr7	17914599	17914600	rs6461354	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	7p21.1	SNX13	rs6461354-T	NR	2E-10	(EA)	0.007	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
721	chr7	17914599	17914600	rs6461354	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	7p21.1	SNX13	rs6461354-T	NR	2E-6	(Asian)	0.00512	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
721	chr7	17914599	17914600	rs6461354	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	7p21.1	SNX13	rs6461354-T	NR	1E-8	(EA)	0.009059	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
721	chr7	17914599	17914600	rs6461354	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	7p21.1	SNX13	rs6461354-T	NR	1E-14		0.006366	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
721	chr7	17914599	17914600	rs6461354	30670697	Kilpelainen TO	2019-01-22	Nat Commun	Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity.	HDL cholesterol x physical activity interaction (2df test)	7,395 African American inactive individuals, 13,092 African American active individuals, 2,753 Asian ancestry inactive individuals, 3,650 Asian ancestry active individuals, 22,963 European ancestry inactive individuals, 61,939 European ancestry active individuals, 2,829 Hispanic or Latin American inactive individuals, 6,358 Hispanic or Latin American active individuals	1,886 African American inactive individuals, 1,892 African American active individuals, 1,217 South African Black ancestry inactive individuals, 389 South African Black ancestry active individuals, 2,494 East Asian ancestry inactive individuals, 1,947 East Asian ancestry active individuals,  724 South Asian ancestry inactive individuals, 1,425 South Asian ancestry active individuals, 41,042 European ancestry inactive individuals, 66,575 European ancestry active individuals, 2,619 Hispanic inactive individuals, 8,802 Hispanic active individuals	7p21.1	NR	rs6461354-T	0.4444	6E-14				Affymetrix, Illumina [at least 2500000] (imputed)	N
721	chr7	17914599	17914600	rs6461354	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7p21.1	NR	rs6461354-C	NR	6E-11		0.023	unit increase	Affymetrix [at least 7091467] (imputed)	N
721	chr7	17914599	17914600	rs6461354	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7p21.1	NR	rs6461354-C	0.589	8E-7	(EA)	0.019	unit increase	Affymetrix [at least 7091467] (imputed)	N
721	chr7	17919257	17919258	rs4142995	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	7p21.1		rs4142995-T	0.4	1E-9		6.06	z score increase	Affymetrix [9061022] (imputed)	N
721	chr7	17919257	17919258	rs4142995	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7p21.1	NR	rs4142995-G	NR	2E-10		0.022	unit increase	Affymetrix [at least 7091467] (imputed)	N
721	chr7	17919257	17919258	rs4142995	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7p21.1	NR	rs4142995-G	0.593	1E-6	(EA)	0.019	unit increase	Affymetrix [at least 7091467] (imputed)	N
721	chr7	17919257	17919258	rs4142995	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	HDL cholesterol levels	34,930 East Asian ancestry individuals, 187,167 European ancestry individuals	8,741 Chinese ancestry individuals	7p21.1	SNX13	rs4142995-T	0.384	1E-16	(Trans-ethnic initial)	0.0263	[0.019-0.034] unit decrease (EA Beta values)	Affymetrix, Illumina [~ 1900000] (imputed)	N
721	chr7	17919257	17919258	rs4142995	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	7p21.1	SNX13	rs4142995-T	0.38	9E-12		0.026	[NR] unit decrease	NR [NR] (imputed)	N
721	chr7	17920252	17920253	rs17138358	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	74,970 East Asian ancestry individuals	NA	7p21.1		rs17138358-C	0.503074	5E-8		0.0256767	[0.016-0.035] unit decrease	Illumina [13465896] (imputed)	N
721	chr7	17920252	17920253	rs17138358	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	7p21.1		rs17138358-C	NR	3E-39		0.0274	[0.023-0.032] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
721	chr7	17920252	17920253	rs17138358	33109212	Chang H	2020-10-28	BMC Med	Genetic architecture of cardiometabolic risks in people living with HIV.	Triglyceride levels in HIV infection	3,095 European ancestry individuals, 3,189 African American individuals	NA	7p21.1	SNX13	rs17138358-?		3E-6	(African American)	0.11083479	[0.064-0.158] unit increase	Illumina [13620258] (imputed)	N
721	chr7	17920252	17920253	rs17138358	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p21.1	NR	rs17138358-G	0.595936	3E-15				Affymetrix, Illumina [17210439] (imputed)	N
721	chr7	17920252	17920253	rs17138358	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	7p21.1	SNX13	rs17138358-G	0.601608	4E-44		0.0271383	[0.023-0.031] unit increase	Affymetrix [NR] (imputed)	N
721	chr7	17920252	17920253	rs17138358	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	7p21.1	SNX13	rs17138358-G	0.601488	1E-38		0.0260742	[0.022-0.03] unit increase	Affymetrix [NR] (imputed)	N
721	chr7	17920252	17920253	rs17138358	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	HDL cholesterol levels	34,930 East Asian ancestry individuals, 187,167 European ancestry individuals	8,741 Chinese ancestry individuals	7p21.1	SNX13	rs17138358-C	0.53	2E-8	(Asian initial, BMI unadjusted)	0.043	[0.027-0.059] unit decrease	Affymetrix, Illumina [~ 1900000] (imputed)	N
721	chr7	17920612	17920613	rs10242866	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	7p21.1		rs10242866-T	NR	2E-14		0.0156	[0.012-0.02] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
721	chr7	17920612	17920613	rs10242866	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	7p21.1		rs10242866-T	NR	1E-10		0.0137	[0.0096-0.0178] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
721	chr7	17920612	17920613	rs10242866	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	7p21.1	SNX13	rs10242866-C	0.601302	2E-14		0.0155819	[0.012-0.02] unit decrease	Affymetrix [NR] (imputed)	N
721	chr7	17929654	17929655	rs4291154	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	7p21.1	NR	rs4291154-T	NR	4E-10		0.0177	[0.012-0.023] unit increase	Affymetrix [9000000] (imputed)	N
721	chr7	17929654	17929655	rs4291154	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	7p21.1	NR	rs4291154-T	NR	4E-18		0.0246	[0.019-0.03] unit decrease	Affymetrix [9000000] (imputed)	N
721	chr7	17929654	17929655	rs4291154	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	7p21.1	NR	rs4291154-T	NR	8E-15		0.0211	[0.016-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
721	chr7	17929654	17929655	rs4291154	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	7p21.1	NR	rs4291154-T	NR	3E-16		0.0232	[0.018-0.029] unit decrease	Affymetrix [9000000] (imputed)	N
721	chr7	17941865	17941865	rs781006834	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	7p21.1	SNX13	rs781006834-?	NR	3E-11		0.0185	[0.014-0.023] unit increase	Affymetrix [5701386] (imputed)	N
721	chr7	17941865	17941865	rs781006834	31589552	Lind L	2019-10-07	Metab Syndr Relat Disord	Genome-Wide Association Study of the Metabolic Syndrome in UK Biobank.	Metabolic syndrome	291,107 European ancestry individuals	NA	7p21.1	SNX13	rs781006834-G	0.344659	3E-9		0.0411062	[-0.03946-0.12167] unit increase	Affymetrix [9463307] (imputed)	N
721	chr7	17942405	17942406	rs4721668	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	7p21.1	NR	rs4721668-T	0.121342	1E-12		0.019957	[0.014-0.025] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
721	chr7	17942405	17942406	rs4721668	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p21.1	NR	rs4721668-T	0.109516	9E-11				Affymetrix, Illumina [23114412] (imputed)	N
721	chr7	17942405	17942406	rs4721668	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	7p21.1	NR	rs4721668-T	0.121549	2E-13		0.021533	[0.016-0.027] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
721	chr7	17950570	17950571	rs79348723	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	7p21.1	SNX13	rs79348723-C	0.122032	7E-10		0.020808345	[0.014-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
722	chr7	17971223	17971224	rs4532510	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	7p21.1	SNX13	rs4532510-T	0.502916	6E-10		0.011303	[0.0077-0.0149] unit increase	NR [13737936] (imputed)	N
722	chr7	17974865	17974866	rs13362827	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	7p21.1	NR	rs13362827-C	NR	8E-11		0.0217	[0.015-0.028] unit increase	Affymetrix [9000000] (imputed)	N
722	chr7	17978827	17978828	rs56287412	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	7p21.1		rs56287412-T	0.491999	2E-9		0.0244304	[0.017-0.032] unit increase	NR [11722792] (imputed)	N
722	chr7	17978827	17978828	rs56287412	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	7p21.1		rs56287412-T	0.491999	2E-10		0.0253435	[0.018-0.033] unit increase	NR [11722792] (imputed)	N
722	chr7	17978827	17978828	rs56287412	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	7p21.1		rs56287412-T	0.491999	4E-12		0.0274102	[0.02-0.035] unit increase	NR [11722792] (imputed)	N
722	chr7	17978827	17978828	rs56287412	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in IDL	115,082 European ancestry individuals	NA	7p21.1		rs56287412-T	0.491999	1E-8		0.0236642	[0.015-0.032] unit increase	NR [11722792] (imputed)	N
722	chr7	17978827	17978828	rs56287412	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	7p21.1		rs56287412-T	0.491999	4E-8		0.0220135	[0.014-0.03] unit decrease	NR [11722792] (imputed)	N
722	chr7	17978827	17978828	rs56287412	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	7p21.1		rs56287412-T	0.491999	1E-9		0.0242365	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
722	chr7	17978827	17978828	rs56287412	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	7p21.1		rs56287412-T	0.491999	5E-9		0.0230627	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
722	chr7	17978827	17978828	rs56287412	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	7p21.1		rs56287412-T	0.491999	4E-8		0.0227371	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
722	chr7	17978827	17978828	rs56287412	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	7p21.1		rs56287412-T	0.491999	3E-8		0.0216479	[0.014-0.029] unit decrease	NR [11722792] (imputed)	N
722	chr7	17978827	17978828	rs56287412	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in IDL	115,082 European ancestry individuals	NA	7p21.1		rs56287412-T	0.491999	4E-8		0.0222373	[0.014-0.03] unit decrease	NR [11722792] (imputed)	N
722	chr7	17978827	17978828	rs56287412	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	7p21.1		rs56287412-T	0.491999	3E-8		0.022561	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
722	chr7	17978827	17978828	rs56287412	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	7p21.1		rs56287412-T	0.491999	2E-8		0.0226578	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
722	chr7	17978827	17978828	rs56287412	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	7p21.1		rs56287412-T	0.491999	1E-11		0.0273975	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
722	chr7	17978827	17978828	rs56287412	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	7p21.1		rs56287412-?	NR	2E-8				NR [~ 8900000] (imputed)	N
722	chr7	17979792	17979793	rs3800963	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Creatine kinase levels	106,080 Japanese ancestry individuals	NA	7p21.1	SNX13	rs3800963-?	NR	2E-9		0.02678	[0.018-0.036] unit increase novel	Illumina [6108953] (imputed)	N
722	chr7	17980280	17980281	rs10268632	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	HDL cholesterol levels	115,082 European ancestry individuals	NA	7p21.1		rs10268632-A	0.488242	5E-9		0.0215969	[0.014-0.029] unit decrease	NR [11722792] (imputed)	N
722	chr7	17980280	17980281	rs10268632	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	7p21.1		rs10268632-A	0.488242	1E-9		0.0225289	[0.015-0.03] unit decrease	NR [11722792] (imputed)	N
722	chr7	17980414	17980415	rs145700169	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	7p21.1	SNX13	rs145700169-C	0.0169316769736704	2E-6	(G_Coprococcus_HB)	1.22892	[0.72-1.74] unit decrease	Illumina [7711310] (imputed)	N
722	chr7	17981309	17981310	rs10950690	28107422	de Vries PS	2017-01-20	PLoS One	Comparison of HapMap and 1000 Genomes Reference Panels in a Large-Scale Genome-Wide Association Study.	Fibrinogen levels	91,953 European ancestry individuals (imputed to HapMap)		7p21.1	SNX13, PRPS1L1	rs10950690-?	NR	1E-11		0.0071	unit increase	Affymetrix, Illumina [2749429] (imputed)	N
722	chr7	17986097	17986098	rs4721672	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	7p21.1		rs4721672-T	0.508105	1E-12		0.0287581	[0.021-0.037] unit increase	NR [11722792] (imputed)	N
722	chr7	17986097	17986098	rs4721672	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of HDL particles	115,082 European ancestry individuals	NA	7p21.1		rs4721672-T	0.508105	1E-8		0.0221723	[0.015-0.03] unit decrease	NR [11722792] (imputed)	N
722	chr7	17986097	17986098	rs4721672	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium HDL	115,082 European ancestry individuals	NA	7p21.1		rs4721672-T	0.508105	4E-9		0.0224447	[0.015-0.03] unit decrease	NR [11722792] (imputed)	N
722	chr7	17986097	17986098	rs4721672	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	7p21.1		rs4721672-T	0.508105	9E-9		0.0218872	[0.014-0.029] unit decrease	NR [11722792] (imputed)	N
722	chr7	17986304	17986305	rs10716049	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	7p21.1		rs10716049-T	NR	4E-10		0.0127	[0.0088-0.0166] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
722	chr7	17987864	17987865	rs6942635	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	7p21.1		rs6942635-T	0.491267	2E-9		0.0237252	[0.016-0.031] unit increase	NR [11722792] (imputed)	N
722	chr7	17987864	17987865	rs6942635	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	7p21.1		rs6942635-T	0.491267	4E-9		0.0233538	[0.016-0.031] unit increase	NR [11722792] (imputed)	N
722	chr7	17987864	17987865	rs6942635	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	7p21.1		rs6942635-T	0.491261	1E-8		0.022007	[0.014-0.03] unit increase	NR [11722792] (imputed)	N
722	chr7	17987864	17987865	rs6942635	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	7p21.1		rs6942635-T	0.491267	4E-10		0.0250918	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
722	chr7	17987864	17987865	rs6942635	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	7p21.1		rs6942635-T	0.491267	4E-11		0.0260833	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
722	chr7	17992013	17992014	rs4466298	31566214	Kulminski AM	2019-09-30	J Gerontol A Biol Sci Med Sci	Quantitative and qualitative role of antagonistic heterogeneity in genetics of blood lipids.	High density lipoprotein cholesterol levels	29,902 European ancestry individuals	NA	7p21.1		rs4466298-A	0.45	6E-9		0.7	[0.46-0.94] unit decrease	Affymetrix, Illumina [up to 2500000] (imputed)	N
722	chr7	17994493	17994494	rs12699921	28107422	de Vries PS	2017-01-20	PLoS One	Comparison of HapMap and 1000 Genomes Reference Panels in a Large-Scale Genome-Wide Association Study.	Fibrinogen levels	91,953 European ancestry individuals (imputed to 1000 Genomes)		7p21.1	SNX13, PRPS1L1	rs12699921-?	NR	1E-12		0.0071	unit increase	Affymetrix, Illumina [10883314] (imputed)	N
722	chr7	17997611	17997612	rs10226084	23969696	Sabater-Lleal M	2013-08-22	Circulation	Multiethnic meta-analysis of genome-wide association studies in >100 000 subjects identifies 23 fibrinogen-associated Loci but no strong evidence of a causal association between circulating fibrinogen and cardiovascular disease.	Fibrinogen	91,323 European ancestry individuals	8,423 African American individuals, 1,447 Hispanic individuals	7p21.1	SNx13, PRPS1L1	rs10226084-T	0.52	5E-10	(EA)	0.007	[0.005-0.009] unit decrease	Affymetrix, Illumina [2515567] (imputed)	N
722	chr7	18012256	18012257	rs12699929	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	7p21.1		rs12699929-C	0.491541	1E-17		0.019300599	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
722	chr7	18018436	18018437	rs772748664	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	7p21.1	NR	rs772748664-D	0.513311	1E-17		0.017289	[0.013-0.021] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
722	chr7	18018436	18018437	rs772748664	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	7p21.1		rs772748664-?	NR	2E-10		0.013192	[0.0091-0.0173] unit increase	Affymetrix [20259828] (imputed)	N
722	chr7	18022259	18022260	rs11560253	33002439	Jin G	2020-10-01	Lancet Oncol	Genetic risk, incident gastric cancer, and healthy lifestyle: a meta-analysis of genome-wide association studies and prospective cohort study.	Gastric cancer	10,254 Han Chinese ancestry cases, 10,914 Han Chinese ancestry controls	NA	7p21.1	NR	rs11560253-A	0.75	4E-6		1.12	NR	Affymetrix, Illumina [6957974] (imputed)	N
722	chr7	18040359	18040360	rs6961730	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7p21.1		rs6961730-?	NR	4E-14				NR [~ 8900000] (imputed)	N
722	chr7	18040475	18040476	rs6961768	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	7p21.1	PRPS1L1	rs6961768-A	0.43	3E-9		0.38	[0.26-0.5] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
722	chr7	18040475	18040476	rs6961768	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	7p21.1	PRPS1L1	rs6961768-A	0.4249	1E-9		0.4082	[0.28-0.54] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
722	chr7	18041084	18041085	rs4568518	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Measles	38,219 European ancestry cases, 47,279 European ancestry controls	NA	7p21.1	NR	rs4568518-?	NR	5E-6		0.064	[0.037-0.091] unit increase	Illumina [at least 560000] (imputed)	N
723	chr7	18177403	18177404	rs1178365	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	7p21.1		rs1178365-A	0.183288	4E-10		0.0267279	[0.018-0.035] unit increase	Illumina [13478928] (imputed)	N
723	chr7	18191901	18191902	rs6978611	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	7p21.1	NR	rs6978611-T	0.21201	4E-40		0.029733	[0.025-0.034] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
723	chr7	18196416	18196417	rs6976429	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	7p21.1	HDAC9	rs6976429-T	0.212432	6E-11		0.0170226	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
723	chr7	18200462	18200463	rs1019068	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	7p21.1	HDAC9	rs1019068-C	0.213151	1E-28		0.030516475	[0.025-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
723	chr7	18200462	18200463	rs1019068	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	7p21.1	HDAC9	rs1019068-C	0.2118	2E-14		0.03433184	[0.026-0.043] unit decrease	Affymetrix [~ 2500000] (imputed)	N
723	chr7	18201222	18201223	rs17138703	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	7p21.1	HDAC9	rs17138703-G	0.213404	4E-41		0.036973964	[0.032-0.042] unit decrease	Affymetrix [93095623] (imputed)	N
723	chr7	18204017	18204018	rs13243921	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p21.1	NR	rs13243921-C	0.221979	7E-10				Affymetrix, Illumina [24649327] (imputed)	N
723	chr7	18217016	18217017	rs17138723	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	7p21.1	HDAC9	rs17138723-G	0.216365	8E-19		0.02423462	[0.019-0.03] unit increase	Affymetrix [93095623] (imputed)	N
724	chr7	18224596	18224597	rs17138740	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	7p21.1		rs17138740-G	NR	7E-24		0.022	[0.018-0.026] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
724	chr7	18229134	18229135	rs17138751	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p21.1	NR	rs17138751-T	0.23464	7E-42				Affymetrix, Illumina [24588908] (imputed)	N
724	chr7	18234856	18234857	rs1178326	26220383	Jang HW	2015-06-02	Epilepsy Res	GWAS identifies two susceptibility loci for lamotrigine-induced skin rash in patients with epilepsy.	Epilepsy and lamotrigine-induced maculopapular eruptions	34 Korean ancestry cases, 1,080 Korean ancestry healthy controls	NA	7p21.1	HDAC9	rs1178326-C	0.01	2E-7		8.1	[NR]	Affymetrix [4893794] (imputed)	N
724	chr7	18236506	18236507	rs1528683	33766948	Zhu Z	2021-03-25	Eur Respir J	A large-scale genome-wide association analysis of lung function in the Chinese population identifies novel loci and highlights shared genetic etiology with obesity.	Lung function (FEV1)	100,285 Chinese ancestry individuals	NA	7p21.1		rs1528683-C	0.77	4E-13		0.039	L increase	Affymetrix [NR] (imputed)	N
724	chr7	18236506	18236507	rs1528683	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	7p21.1		rs1528683-?	NR	2E-17				NR [~ 8900000] (imputed)	N
724	chr7	18240150	18240151	rs34461394	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	7p21.1		rs34461394-A	NR	5E-10		0.0149	[0.01-0.02] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
724	chr7	18252074	18252075	rs117756856	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		7p21.1	HDAC9	rs117756856-A	0.003	9E-6	(liability model)	0.89	[0.5-1.28] unit increase	NR [19725427] (imputed)	N
724	chr7	18263667	18263668	rs302152	29559693	Zengini E	2018-03-20	Nat Genet	Genome-wide analyses using UK Biobank data provide insights into the genetic architecture of osteoarthritis.	Osteoarthritis of the hip (hospital diagnosed)	2,396 European ancestry cases, 9,593 European ancestry controls	5,714 Icelandic ancestry cases, 199,421 Icelandic ancestry controls	7p21.1	NR	rs302152-T	0.520286	5E-7		1.1051	[1.0628-1.149]	Affymetrix [16122076] (imputed)	N
724	chr7	18267228	18267229	rs302153	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	7p21.1		rs302153-?	NR	1E-9				NR [~ 8900000] (imputed)	N
724	chr7	18323898	18323899	rs302165	30804566	Lane JM	2019-02-25	Nat Genet	Biological and clinical insights from genetics of insomnia symptoms.	Insomnia symptoms (never/rarely vs. usually)	129,270 European ancestry cases, 108,357 European ancestry controls	17,140 European ancestry cases, 61,850 European ancestry controls	7p21.1	PRPS1L1/HDAC9	rs302165-G	0.216374	6E-6		1.02	[1.01-1.04]	Affymetrix [14661600] (imputed)	N
724	chr7	18323898	18323899	rs302165	30804566	Lane JM	2019-02-25	Nat Genet	Biological and clinical insights from genetics of insomnia symptoms.	Insomnia symptoms (never/rarely vs. sometimes/usually)	345,022 European ancestry cases, 108,357 European ancestry controls	17,140 European ancestry cases, 61,850 European ancestry controls	7p21.1	PRPS1L1/HDAC9	rs302165-G	0.216374	6E-8		1.02	[1.01-1.04]	Affymetrix [14661600] (imputed)	N
724	chr7	18331914	18331915	rs583769	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	7p21.1	NR	rs583769-G	0.7488	3E-9		0.0311	[0.021-0.041] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
724	chr7	18331914	18331915	rs583769	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	7p21.1	NR	rs583769-G	0.7164	8E-13		0.0307	[0.022-0.039] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
724	chr7	18333180	18333181	rs62449144	31530331	Thorp JG	2019-09-18	Psychol Med	Genetic heterogeneity in self-reported depressive symptoms identified through genetic analyses of the PHQ-9.	Depressive symptom (fatigue) (ordinal trait)	148,752 European ancestry individuals	NA	7p21.1	HDAC9	rs62449144-C	0.835	8E-9		0.024	[0.016-0.032] unit decrease	NR [9413637] (imputed)	N
725	chr7	18355932	18355933	rs185912594	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	7p21.1	HDAC9	rs185912594-A	0.9889	3E-8	(HexCer d18:1/16:0)	0.489	[0.31-0.66] unit decrease	Illumina [~ 47000000] (imputed)	N
725	chr7	18360555	18360556	rs661818	33766948	Zhu Z	2021-03-25	Eur Respir J	A large-scale genome-wide association analysis of lung function in the Chinese population identifies novel loci and highlights shared genetic etiology with obesity.	Lung function (FVC)	100,285 Chinese ancestry individuals	NA	7p21.1		rs661818-T	0.46	1E-11		0.031	[0.021-0.041] L decrease	Affymetrix [NR] (imputed)	N
725	chr7	18375244	18375245	rs12666612	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	7p21.1	HDAC9	rs12666612-G	0.088	8E-6	(Vigorous activity )	0.03	[NR] min/d increase	Illumina [899892]	N
725	chr7	18409992	18409993	rs11764536	30374069	Styrkarsdottir U	2018-10-29	Nat Genet	Meta-analysis of Icelandic and UK data sets identifies missense variants in SMO, IL11, COL11A1 and 13 more new loci associated with osteoarthritis.	Osteoarthritis (hip)	17,151 European ancestry cases, 596,639 European ancestry controls	NA	7p21.1	HDAC9	rs11764536-C	NR	2E-9	(additive)	1.26	[1.17-1.36]	Affymetrix, Illumina [11554240] (imputed)	N
725	chr7	18427300	18427301	rs76969352	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	7p21.1	NR	rs76969352-?	NR	3E-8				Illumina [7760689] (imputed)	N
725	chr7	18428920	18428921	rs12155400	23393555	Jensen RA	2013-02-05	PLoS One	Genome-wide association study of retinopathy in individuals without diabetes.	Retinopathy in non-diabetics	19,411 European ancestry individuals	NA	7p21.1	HDAC9	rs12155400-A	0.98	8E-6		0.73	[0.42-1.04] unit decrease	Illumina [2675979] (imputed)	N
725	chr7	18436336	18436337	rs111844273	34450027	Boer CG	2021-08-24	Cell	Deciphering osteoarthritis genetics across 826,690 individuals from 9 populations.	Osteoarthritis (hip)	36,445 European ancestry cases, 316,943 European ancestry controls	NA	7p21.1		rs111844273-A	0.0209	1E-12		1.2607415	[1.182937995-1.343662145]	Affymetrix, Illumina [NR] (imputed)	N
725	chr7	18444003	18444004	rs551625260	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cirrhosis	2,551 East Asian ancestry cases, 176,175 East Asian ancestry controls	NA	7p21.1		rs551625260-A	6.58158E-4	3E-8		4.6168447	[2.98-6.25] unit increase	Illumina [13429980] (imputed)	N
725	chr7	18444003	18444004	rs551625260	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cirrhosis	122 European ancestry cases, 347,284 European ancestry controls, 2,551 East Asian ancestry cases, 176,175 East Asian ancestry controls	NA	7p21.1		rs551625260-A	NR	3E-8		4.6168	[2.98-6.25] unit increase	Affymetrix, Illumina [20457790] (imputed)	N
725	chr7	18444418	18444419	rs61549860	26806518	Hou L	2016-01-22	Lancet	Genetic variants associated with response to lithium treatment in bipolar disorder: a genome-wide association study.	Response to lithium treatment in bipolar disorder (continuous phenotype)	2,039 European ancestry individuals	NA	7p21.1	HDAC9	rs61549860-T	0.22	5E-7		0.59	[0.36-0.83] unit increase	Affymetrix, Illumina [> 6000000] (imputed)	N
725	chr7	18471035	18471036	rs115389711	34074324	Wan JY	2021-06-01	Diabetol Metab Syndr	Genome-wide association analysis of metabolic syndrome quantitative traits in the GENNID multiethnic family study.	Fasting glucose	281 African American individuals from 73 families, 516 European ancestry individuals from 75 families, 125 Japanese American individuals from 15 families, 598 Mexican American individuals from 96 families	NA	7p21.1	HDAC9	rs115389711-T	0.05	3E-7	(African American)	0.85	[0.52-1.18] unit increase	Illumina [up to 13042663] (imputed)	N
726	chr7	18486441	18486442	rs17432268	29703947	Jawinski P	2018-04-27	Mol Psychiatry	Human brain arousal in the resting state: a genome-wide association study.	Resting-state electroencephalogram vigilance	1,877 European ancestry individuals	NA	7p21.1	HDAC9	rs17432268-A	0.982	9E-7	(Mean vigilance)	0.5554	[0.33-0.78] unit increase	Affymetrix [8042262] (imputed)	N
726	chr7	18497010	18497011	rs2106507	31194736	Tiensuu H	2019-06-13	PLoS Genet	Risk of spontaneous preterm birth and fetal growth associates with fetal SLIT2.	Moderate-to-late spontaneous preterm birth	75 Finnish ancestry infant cases, 419 Finnish ancestry infant controls	NA	7p21.1	HDAC9	rs2106507-?	NR	6E-6		2.81		Illumina [6778521] (imputed)	N
726	chr7	18504507	18504508	rs213273	24554482	Leger PD	2014-02-20	J Neurovirol	Genome-wide association study of peripheral neuropathy with D-drug-containing regimens in AIDS Clinical Trials Group protocol 384.	Response to anti-retroviral therapy (ddI/d4T) in HIV-1 infection (Grade 3 peripheral neuropathy)	8 European ancestry cases, 12 African American cases, 3 Hispanic cases, 85 European ancestry controls, 49 African American controls, 30 Hispanic controls	NA	7p21.1	HDAC9	rs213273-?		2E-8	(Hispanic)		[NR]	Illumina [936149]	N
726	chr7	18517278	18517279	rs17347800	26089329	Carty CL	2015-06-18	Stroke	Meta-Analysis of Genome-Wide Association Studies Identifies Genetic Risk Factors for Stroke in African Americans.	Stroke	up to 1,592 African American cases, up to 13,154 African American controls	NA	7p21.1	HDAC9	rs17347800-A	0.04	4E-7		0.51	[0.31-0.71] unit increase	Affymetrix, Illumina [up to 2600000] (imputed)	N
726	chr7	18548252	18548253	rs11298745	28060188	Hamet P	2017-01-16	J Hypertens	PROX1 gene CC genotype as a major determinant of early onset of type 2 diabetes in slavic study participants from Action in Diabetes and Vascular Disease: Preterax and Diamicron MR Controlled Evaluation study.	Type 2 diabetes (age of onset)	2,307 Celtic ancestry individuals, 1,102 Slavic ancestry individuals	NA	7p21.1	HDAC9, MIR1302-6, TWIST1	rs11298745-?	NR	2E-6				Affymetrix [5045527] (imputed)	N
727	chr7	18652114	18652115	rs706084	27629369	Gao J	2016-09-15	Neuropsychopharmacology	Genome-Wide Association Study of Loneliness Demonstrates a Role for Common Variation.	Loneliness	2,075 European ancestry cases, 3,875 European ancestry controls, 427 African American cases, 398 African American controls, 294 Hispanic cases, 327 Hispanic controls, 57 cases, 73 controls	NA	7p21.1	HDAC9	rs706084-?	NR	3E-6	(EA)	0.0723	[0.042-0.102] unit increase	Illumina [7176022] (imputed)	N
727	chr7	18669402	18669403	rs76872642	29907492	Nakahara S	2018-06-12	Schizophr Res	Polygenic risk score, genome-wide association, and gene set analyses of cognitive domain deficits in schizophrenia.	Reasoning	2 Alaskan native ancestry schizophrenia cases, 18 Asian ancestry schizophrenia cases, 20 African American schizophrenia cases, 1 Native Hawaiian ancestry schizophrenia cases, 86 European ancestry schizophrenia cases, 2 Alaskan native ancestry controls, 10 Asian ancestry controls, 17 African American controls, 1 Native Hawaiian ancestry controls, 106 European ancestry controls	NA	7p21.1	HDAC9	rs76872642-A		5E-8		3.4	[NR] unit decrease	Illumina [NR] (imputed)	N
727	chr7	18672383	18672384	rs801540	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 45)	19,670 European ancestry individuals	NA	7p21.1		rs801540-?	NR	1E-8				NR [9705931] (imputed)	N
727	chr7	18697666	18697667	rs73683128	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	7p21.1	NR	rs73683128-A	0.124437	1E-23		0.0464497	[0.037-0.056] unit increase	NR [19129689] (imputed)	N
727	chr7	18698330	18698331	rs79524815	29458411	Chung J	2018-02-20	Alzheimers Res Ther	Genome-wide pleiotropy analysis of neuropathological traits related to Alzheimer's disease.	Neurofibrillary tangles or cerebral amyloid angiopathy (pleiotropy)	3,135 European ancestry Alzheimer's diseases cases, 463 European ancestry controls	NA	7p21.1	HDAC9	rs79524815-G	0.03	1E-8				NR [6500000] (imputed)	N
727	chr7	18698330	18698331	rs79524815	29458411	Chung J	2018-02-20	Alzheimers Res Ther	Genome-wide pleiotropy analysis of neuropathological traits related to Alzheimer's disease.	Neuritic plaques or neurofibrillary tangles or cerebral amyloid angiopathy (pleiotropy)	3,135 European ancestry Alzheimer's disease cases, 463 European ancestry controls	NA	7p21.1	HDAC9	rs79524815-G	NR	1E-7				NR [6500000] (imputed)	N
727	chr7	18698330	18698331	rs79524815	29458411	Chung J	2018-02-20	Alzheimers Res Ther	Genome-wide pleiotropy analysis of neuropathological traits related to Alzheimer's disease.	Neuritic plaques or cerebral amyloid angiopathy (pleiotropy)	3,135 European ancestry Alzheimer's disease cases, 463 European ancestry controls	NA	7p21.1	HDAC9	rs79524815-G	0.03	3E-6				NR [6500000] (imputed)	N
727	chr7	18698660	18698661	rs2285440	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	7p21.1	HDAC9	rs2285440-?	NR	1E-25		0.02983307	[0.024-0.035] unit decrease	Illumina [27896057] (imputed)	N
727	chr7	18706702	18706703	rs17348528	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	7p21.1		rs17348528-?	NR	2E-17				NR [~ 8900000] (imputed)	N
727	chr7	18710387	18710388	rs801525	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		7p21.1	HDAC9	rs801525-A	NR	6E-9		0.0571477	NR unit increase	NR [NR] (imputed)	N
727	chr7	18723231	18723232	rs73313346	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	7p21.1	NR	rs73313346-?	NR	4E-6				Affymetrix [5486770] (imputed)	N
727	chr7	18734064	18734065	rs12669789	25256182	Foroud T	2014-09-25	Stroke	Genome-wide association study of intracranial aneurysm identifies a new association on chromosome 7.	Intracranial aneurysm	2,617 European ancestry cases, 2,548 European ancestry controls	1,516 European ancestry cases, 5,321 European ancestry controls	7p21.1	TWISTNB, MIR3146, TMEM196	rs12669789-C	NR	2E-6		1.3	[1.17-1.45]	Affymetrix [685281] (imputed)	N
727	chr7	18735246	18735247	rs1178099	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	7p21.1	HDAC9	rs1178099-?	NR	4E-12		0.0246521	[0.018-0.032] unit increase	Illumina [27896057] (imputed)	N
727	chr7	18737196	18737197	rs1178101	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	7p21.1	NR	rs1178101-A	0.1762	1E-8	(Rostral Anterior Cingulate)	4.532522	[2.97-6.1] unit increase	Affymetrix, Illumina [NR]	N
727	chr7	18737196	18737197	rs1178101	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Monobrow	69,284 European ancestry individuals	NA	7p21.1	HDAC9	rs1178101-?	NR	7E-16		0.039	[0.029-0.048] unit increase	Illumina [12039491] (imputed)	N
727	chr7	18739669	18739670	rs10236906	30972912	Wei L	2019-04-10	J Viral Hepat	Genetic variation in FCER1A predicts peginterferon alfa-2a-induced hepatitis B surface antigen clearance in East Asian patients with chronic hepatitis B.	Peginterferon alfa-2a treatment response in chronic hepatitis B infection	up to 1,108 East Asian cases, up to 465 European ancestry cases, up to 63 cases	NA	7p21.1	HDAC9	rs10236906-?		8E-6	(endpoint 4, dominant)	1.754386	[NR]	Illumina [> 750000]	N
727	chr7	18741366	18741367	rs1178103	33547071	Bonfante B	2021-02-05	Sci Adv	A GWAS in Latin Americans identifies novel face shape loci, implicating VPS13B and a Denisovan introgressed region in facial variation.	Facial morphology (columella inclination)	6,169 Latin American individuals	NA	7p21.1		rs1178103-?	NR	3E-8				Illumina [8703729] (imputed)	N
728	chr7	18762651	18762652	rs1178121	27927641	Ombrello MJ	2016-12-07	Ann Rheum Dis	Genetic architecture distinguishes systemic juvenile idiopathic arthritis from other forms of juvenile idiopathic arthritis: clinical and therapeutic implications.	Systemic juvenile idiopathic arthritis	178 European ancestry cases, 434 European ancestry controls, 81 Hispanic/Latin American cases, 177 Hispanic/Latin American controls, 511 cases, 6,336 controls	NA	7p21.1	HDAC9	rs1178121-?		3E-7	(Dominant)	1.6	[1.30-1.90]	Illumina [5600610] (imputed)	N
728	chr7	18767342	18767343	rs1178127	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 12, vertical position of sublabial sulcus relative to central midface)	2,187 European ancestry individuals	NA	7p21.1	NR	rs1178127-G	0.2646	1E-6		0.1672	[0.1-0.23] unit increase	Illumina [10677593] (imputed)	N
728	chr7	18772553	18772554	rs540671238	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Fasting blood glucose	6,457 African American individuals, 13,556 Hispanic/Latino individuals, 1,918 Asian ancestry individuals, 1,400 Native Hawaiian ancestry individuals, 412 Native American ancestry individuals, 168 individuals	NA	7p21.1	DHRS7B	rs540671238-?	NR	3E-8		0.1391898	[0.09-0.188] unit decrease	Illumina [29713514] (imputed)	N
728	chr7	18786816	18786817	rs727851	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7p21.1		rs727851-?	NR	9E-27				NR [~ 8900000] (imputed)	N
728	chr7	18797189	18797190	rs212672	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 1)	4,680 European ancestry individuals	3,566 European ancestry individuals	7p21.1		rs212672-A	0.253691275	1E-20				Illumina [7417619] (imputed)	N
728	chr7	18800412	18800413	rs11764116	20848476	Haritunians T	2010-11-01	Inflamm Bowel Dis	Genetic predictors of medically refractory ulcerative colitis.	Ulcerative colitis	324 European ancestry medically refractory ulcerative colitis cases, 537 European ancestry non-medically refractory ulcerative colitis cases, 2,601 European ancestry controls	NA	7p21.1	HDAC9	rs11764116-A	NR	2E-6	(Analysis II)			Illumina [313720]	N
728	chr7	18810242	18810243	rs7776786	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	7p21.1	NR	rs7776786-?	NR	7E-27				Illumina [at least 7383741] (imputed)	N
728	chr7	18848533	18848534	rs7794273	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	7p21.1	HDAC9, 7SK, NPM1P13, TWIST1	rs7794273-G	NR	3E-6	(sleep offset, weekdays)	0.216	[0.13-0.31] unit decrease	Affymetrix [7141204] (imputed)	N
728	chr7	18865361	18865362	rs56349397	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		7p21.1	HDAC9	rs56349397-C	NR	5E-15		0.0565165	NR unit increase	NR [NR] (imputed)	N
729	chr7	18877873	18877874	rs2073963	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		7p21.1	NR	rs2073963-G	NR	1E-51		0.1	NR unit increase	NR [NR] (imputed)	N
729	chr7	18877873	18877874	rs2073963	22693459	Li R	2012-05-31	PLoS Genet	Six novel susceptibility Loci for early-onset androgenetic alopecia and their unexpected association with common diseases.	Male-pattern baldness	3,891 European ancestry cases, 8,915 European ancestry controls	NA	7p21.1	HDAC9	rs2073963-G	0.530	1E-12		1.29	[1.20-1.38]	Affymetrix, Illumina [2391230] (imputed)	N
729	chr7	18881074	18881075	rs12536836	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	7p21.1	NR	rs12536836-T	0.4076	8E-10	(Cuneus)	5.610818	[3.82-7.4] unit increase	Affymetrix, Illumina [NR]	N
729	chr7	18883689	18883690	rs6461386	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	7p21.1	NR	rs6461386-A	0.3711	2E-14	(Pericalcarine)	8.190409	[6.1-10.28] unit increase	Affymetrix, Illumina [NR]	N
729	chr7	18887632	18887633	rs117584427	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		7p21.1	HDAC9	rs117584427-G	NR	8E-10		0.127959	NR unit decrease	NR [NR] (imputed)	N
729	chr7	18889999	18890000	rs756853	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		7p21.1	NR	rs756853-A	NR	6E-55		0.1	NR unit decrease	NR [NR] (imputed)	N
729	chr7	18891258	18891259	rs13245206	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	7p21.1		rs13245206-?	NR	6E-14				NR [~ 8900000] (imputed)	N
729	chr7	18893992	18893993	rs143623248	32108986	Price KM	2020-02-27	Genes Brain Behav	Genome-Wide Association Study of Word Reading: Overlap with Risk Genes for Neurodevelopmental Disorders.	Reading disability	4,494 European ancestry cases, 306 European ancestry siblings	NA	7p21.1	HDAC9	rs143623248-A	NR	7E-6		4.492	z score increase	Illumina [5300000] (imputed)	N
729	chr7	18895867	18895868	rs4445123	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	7p21.1	NR	rs4445123-?	NR	2E-6				Affymetrix [NR]	N
729	chr7	18896987	18896988	rs71530654	29146897	Pirastu N	2017-11-17	Nat Commun	GWAS for male-pattern baldness identifies 71 susceptibility loci explaining 38% of the risk.	Male-pattern baldness	25,662 British ancestry cases, 17,928 British ancestry controls	13,367 European ancestry cases, 11,851 European ancestry controls, 3,436 cases, 2,435 controls	7p21.1	TWIST1	rs71530654-A	NR	7E-63		0.241923	[0.21-0.27] unit increase	Affymetrix [27512692] (imputed)	N
729	chr7	18896987	18896988	rs71530654	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		7p21.1	HDAC9	rs71530654-G	NR	5E-70		0.112465	NR unit increase	NR [NR] (imputed)	N
729	chr7	18897510	18897511	rs7801037	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		7p21.1	NR	rs7801037-A	NR	8E-68		0.11	NR unit increase	NR [NR] (imputed)	N
729	chr7	18897510	18897511	rs7801037	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Male-pattern baldness	9,009 European ancestry cases, 8,491 European ancestry controls	NA	7p21.1	HDAC9	rs7801037-?	NR	1E-36		1.3333333	[1.27-1.39]	Illumina [13436641] (imputed)	N
729	chr7	18898304	18898305	rs6461387	28272467	Heilmann-Heimbach S	2017-03-08	Nat Commun	Meta-analysis identifies novel risk loci and yields systematic insights into the biology of male-pattern baldness.	Male-pattern baldness	10,846 European ancestry cases, 11,672 European ancestry controls	NA	7p21.1		rs6461387-G	0.4	8E-33		0.25	[0.21-0.29] unit decrease	Affymetrix, Illumina [8004650] (imputed)	N
729	chr7	18899162	18899163	rs67248060	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7p21.1		rs67248060-?	NR	7E-24				NR [~ 8900000] (imputed)	N
729	chr7	18899162	18899163	rs67248060	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	7p21.1		rs67248060-?	NR	2E-146				NR [~ 8900000] (imputed)	N
729	chr7	18899162	18899163	rs67248060	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	7p21.1	NR	rs67248060-T	0.36528	3E-283		0.116231	[0.11-0.12] unit increase	NR [19129689] (imputed)	N
729	chr7	18904174	18904175	rs12699998	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	7p21.1		rs12699998-G	0.38	2E-84		19.48	z score increase	Affymetrix [9061022] (imputed)	N
729	chr7	18904263	18904264	rs12699999	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (min-P)	26,502 European ancestry individuals	NA	7p21.1	POGK, TADA1, ILDR2, MAEL	rs12699999-?		3E-13				NR [7428630] (imputed)	N
729	chr7	18904263	18904264	rs12699999	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (min-P)	26,502 European ancestry individuals	NA	7p21.1	ATP6V1E2, RHOQ, PIGF, CRIPT	rs12699999-?		1E-12				NR [7428630] (imputed)	N
729	chr7	18904399	18904400	rs12700001	32963231	Hofer E	2020-09-22	Nat Commun	Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.	Cortical volume	22,824 European and African American ancestry individuals	NA	7p21.1	HDAC9	rs12700001-?		2E-10	(Pericalcarine)			Affymetrix, Illumina [NR] (imputed)	N
729	chr7	18904399	18904400	rs12700001	32198502	Shin J	2020-03-20	Cereb Cortex	Global and Regional Development of the Human Cerebral Cortex: Molecular Architecture and Occupational Aptitudes.	Cortical surface area (visual PC2)	23,784 European ancestry individuals	19,512 European ancestry individuals, 6,234 individuals	7p21.1	HDAC9	rs12700001-?	NR	1E-10	(EA)	0.0871	[0.06-0.114] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
729	chr7	18905449	18905450	rs12700002	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	7p21.1		rs12700002-C	0.42	9E-38		12.84	z score increase	Affymetrix [9061022] (imputed)	N
729	chr7	18905449	18905450	rs12700002	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	7p21.1	FAM117B, ICA1L, WDR12, CARF, NBEAL1, CYP20A1, ABI2	rs12700002-?		2E-24				NR [7428630] (imputed)	N
729	chr7	18905865	18905866	rs12700003	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	7p21.1		rs12700003-T	0.41	3E-44		13.96	z score increase	Affymetrix [9061022] (imputed)	N
729	chr7	18905865	18905866	rs12700003	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	7p21.1	NR	rs12700003-T	0.3924	1E-17				NR [9056863] (imputed)	N
729	chr7	18905865	18905866	rs12700003	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	7p21.1	NR	rs12700003-T	0.3924	1E-17				NR [9056863] (imputed)	N
729	chr7	18905865	18905866	rs12700003	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	7p21.1		rs12700003-?	NR	7E-23				NR [9705931] (imputed)	N
729	chr7	18905865	18905866	rs12700003	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	7p21.1	HDAC9	rs12700003-?		3E-26				NR [7428630] (imputed)	N
729	chr7	18905907	18905908	rs13242758	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical thickness (MOSTest)	26,502 European ancestry individuals	NA	7p21.1	KCNK2	rs13242758-?		9E-9				NR [7428630] (imputed)	N
729	chr7	18911788	18911789	rs6951144	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	7p21.1		rs6951144-?	NR	2E-8				NR [~ 8900000] (imputed)	N
729	chr7	18915665	18915666	rs10237280	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	7p21.1	NR	rs10237280-T	0.3915	1E-12	(Lingual)	12.729159	[9.22-16.24] unit increase	Affymetrix, Illumina [NR]	N
729	chr7	18915700	18915701	rs13233322	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	7p21.1	HDAC9	rs13233322-?	NR	2E-11		0.020767253	[0.015-0.027] unit decrease	Illumina [27896057] (imputed)	N
729	chr7	18925498	18925499	rs77527369	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		7p21.1	HDAC9	rs77527369-A	NR	6E-9		0.0649193	NR unit decrease	NR [NR] (imputed)	N
729	chr7	18931218	18931219	rs10278449	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		7p21.1	HDAC9	rs10278449-T	NR	2E-14		0.0717058	NR unit decrease	NR [NR] (imputed)	N
729	chr7	18935309	18935310	rs11764843	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	7p21.1	NR	rs11764843-A	0.394	1E-6	(IFNgamma_CXCL10_of_Monocytes)			Illumina [5084123] (imputed)	N
729	chr7	18947954	18947955	rs1117533	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	7p21.1		rs1117533-?	NR	5E-18				NR [~ 8900000] (imputed)	N
729	chr7	18955686	18955687	rs6969316	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	7p21.1	NR	rs6969316-A	0.293263	4E-16		0.0280559	[0.021-0.035] unit decrease	NR [19129689] (imputed)	N
729	chr7	18968271	18968272	rs143455326	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Platelet count	16,201 African American or Afro-Caribbean individuals	NA	7p21.1		rs143455326-T	0.9877	2E-8		0.4263	[0.28-0.58] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
729	chr7	18971522	18971523	rs6950598	33338681	Chu H	2020-12-15	Environ Int	A prospective study of the associations among fine particulate matter, genetic variants, and the risk of colorectal cancer.	Colorectal cancer x fine particulate matter exposure levels interaction	590 European ancestry cases, 55 Black cases, 9 Hispanic cases, 28 Asian ancestry cases, 5 cases, 12,715 European ancestry controls, 1,153 Black controls, 37 Hispanic controls, 94 Asian ancestry controls, 15 controls	NA	7p21.1	HDAC9	rs6950598-C	0.196	2E-9		0.88	[0.84-0.92]	Illumina [4085111] (imputed)	N
729	chr7	18980266	18980267	rs2853552	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	7p21.1	HDAC9	rs2853552-A	0.26	7E-6	(BMI z-score change )	0.03	[NR] SD/y increase	Illumina [899892]	N
730	chr7	19016164	19016165	rs2526639	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7p21.1		rs2526639-?	NR	4E-17				NR [~ 8900000] (imputed)	N
730	chr7	19016475	19016476	rs78872508	30514930	Mukherjee S	2018-12-04	Mol Psychiatry	Genetic data and cognitively defined late-onset Alzheimer's disease subgroups.	Alzheimer's disease with multiple cognitive domain impairments	Up to 248 European ancestry cases, 3,447 European ancestry controls	NA	7p21.1	NR	rs78872508-C	0.13	2E-6		2.2222223	[1.89-2.56]	NR [up to 6398204] (imputed)	N
730	chr7	19016830	19016831	rs9886098	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 5)	19,670 European ancestry individuals	NA	7p21.1		rs9886098-?	NR	3E-8				NR [9705931] (imputed)	N
730	chr7	19016870	19016871	rs12533452	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	7p21.1	HDAC9	rs12533452-T	0.1569	1E-19		0.0237	[0.019-0.029] unit increase	Affymetrix [18391927] (imputed)	N
730	chr7	19018220	19018221	rs2240278	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	7p21.1	HDAC9	rs2240278-?	NR	1E-8		0.018608322	[0.012-0.025] unit increase	Illumina [27896057] (imputed)	N
730	chr7	19030277	19030278	rs71524263	27997041	Traylor M	2016-12-20	Ann Neurol	Genetic variation at 16q24.2 is associated with small vessel stroke.	Large artery stroke	1,877 European ancestry cases, 12,285 European ancestry controls	1,130 European ancestry cases, 17,970 European ancestry controls	7p21.1		rs71524263-?	NR	2E-12		7.047	z score increase	Affymetrix, Illumina [NR] (imputed)	N
730	chr7	19031029	19031030	rs4721735	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris color (b* coordinate)	329 South Asian ancestry individuals		7p21.1	HDAC9	rs4721735-A	0.471	8E-6		0.417	[0.24-0.6] unit decrease	Illumina [640625] (imputed)	N
730	chr7	19031934	19031935	rs11984041	26708676	Pulit SL	2015-12-18	Lancet Neurol	Loci associated with ischaemic stroke and its subtypes (SiGN): a genome-wide association study.	Ischemic stroke (large artery atherosclerosis)	up to 2,349 European ancestry cases, up to 220 African ancestry cases, up to 146 Hispanic cases, 26,690 European ancestry controls, 3,354 African ancestry controls, 2,429 Hispanic controls	33 African ancestry cases, 34 East Asian ancestry cases, 1,787 European ancestry cases, 40 Hispanic ancestry cases, 355 South Asian ancestry cases, 239 African ancestry controls, 329 East Asian ancestry controls, 176,782 European ancestry controls, 686 Hispanic controls, 5,193 South Asian ancestry controls	7p21.1	HDAC9	rs11984041-T	0.093	5E-9	(CCSp)	1.24	[1.15-1.33]	Illumina [up to 15400000] (imputed)	N
730	chr7	19031934	19031935	rs11984041	22306652	Bellenguez C	2012-02-05	Nat Genet	Genome-wide association study identifies a variant in HDAC9 associated with large vessel ischemic stroke.	Stroke	3,548 European ancestry cases, 5,972 European ancestry controls	6,594 European ancestry cases, 34,864 European ancestry controls	7p21.1	HDAC9	rs11984041-A	0.09	2E-11	(LVD)	1.42	[1.28-1.57]	Illumina [495851]	N
730	chr7	19035919	19035920	rs2074633	34601942	van Zuydam NR	2021-10-04	Circ Genom Precis Med	Genome-Wide Association Study of Peripheral Artery Disease.	Peripheral artery disease in non diabetes	6,732 Finnish ancestry cases, 416,855 Finnish ancestry controls, 6,732 non-Scandinavian ancestry cases, 416,855 non-Scandinavian ancestry controls, 6,732 British ancestry cases, 416,855 British ancestry controls	NA	7p21.1		rs2074633-G	0.21	4E-7		1.13	[1.09-1.18]	Illumina [NR] (imputed)	N
730	chr7	19035919	19035920	rs2074633	26488411	Matsukura M	2015-10-21	PLoS One	Genome-Wide Association Study of Peripheral Arterial Disease in a Japanese Population.	Peripheral artery disease	785 Japanese ancestry cases, 3,383 Japanese ancestry controls	2,379 Japanese ancestry cases, 16,752 Japanese ancestry controls	7p21.1	HDAC9	rs2074633-C	NR	8E-8		1.16	[1.10-1.22]	Illumina [431666]	N
730	chr7	19036774	19036775	rs2023938	28265093	Malik R	2017-03-06	Proc Natl Acad Sci U S A	Common coding variant in SERPINA1 increases the risk for large artery stroke.	Large artery stroke	up to 2,286 European ancestry cases, up to 376 South Asian cases, up to 8,884 European ancestry controls, up to 978 South Asian controls	NA	7p21.1	HDAC9	rs2023938-G	0.09	8E-7		1.28	[1.16-1.40]	Illumina [92772]	N
730	chr7	19037660	19037661	rs7798197	25256182	Foroud T	2014-09-25	Stroke	Genome-wide association study of intracranial aneurysm identifies a new association on chromosome 7.	Intracranial aneurysm	2,617 European ancestry cases, 2,548 European ancestry controls	1,516 European ancestry cases, 5,321 European ancestry controls	7p21.1	TWISTNB, MIR3146, TMEM196	rs7798197-A	NR	5E-6		1.18	[1.10-1.27]	Affymetrix [685281] (imputed)	N
730	chr7	19041336	19041337	rs2526626	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	7p21.1	NR	rs2526626-A	0.251897	6E-13		0.0267405	[0.019-0.034] unit decrease	NR [19129689] (imputed)	N
730	chr7	19044677	19044678	rs2526622	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	7p21.1		rs2526622-?	NR	4E-8				NR [~ 8900000] (imputed)	N
730	chr7	19045396	19045397	rs2526620	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Ischemic stroke	11,929 European ancestry cases, 472,192 European ancestry controls, 22,664 East Asian ancestry cases, 152,022 East Asian ancestry controls	NA	7p21.1		rs2526620-G	NR	5E-8		0.05	[0.032-0.068] unit increase	Affymetrix, Illumina [25844498] (imputed)	N
730	chr7	19045396	19045397	rs2526620	32964493	Palmer MR	2020-09-22	Genet Epidemiol	Loci identified by a genome-wide association study of carotid artery stenosis in the eMERGE network.	Carotid artery stenosis	934 British ancestry cases, 408,027 British ancestry controls	NA	7p21.1	NR	rs2526620-G	0.19	1E-12		0.44	[0.32-0.56] unit increase	Affymetrix [17981292] (imputed)	N
730	chr7	19046176	19046177	rs6963129	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Diastolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	7p21.1	TWIST1	rs6963129-G	0.6395	3E-11		0.2072	[0.15-0.27] mmHg increase	Affymetrix [NR] (imputed)	N
730	chr7	19049387	19049388	rs2107595	34601942	van Zuydam NR	2021-10-04	Circ Genom Precis Med	Genome-Wide Association Study of Peripheral Artery Disease.	Peripheral artery disease in non diabetes	6,732 Finnish ancestry cases, 416,855 Finnish ancestry controls, 6,732 non-Scandinavian ancestry cases, 416,855 non-Scandinavian ancestry controls, 6,732 British ancestry cases, 416,855 British ancestry controls	NA	7p21.1		rs2107595-A	0.16	4E-8		1.16	[1.11-1.21]	Illumina [NR] (imputed)	N
730	chr7	19049387	19049388	rs2107595	34601942	van Zuydam NR	2021-10-04	Circ Genom Precis Med	Genome-Wide Association Study of Peripheral Artery Disease.	Peripheral artery disease	12,086 European ancestry cases, 449,548 European ancestry controls	31,307 cases, 211,753 controls, 3,164 East Asian ancestry cases, 20,134 East Asian ancestry controls	7p21.1		rs2107595-A	0.83	4E-11		1.09	[1.06-1.11]	Affymetrix, Illumina [NR] (imputed)	N
730	chr7	19049387	19049388	rs2107595	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	7p21.1		rs2107595-A	NR	8E-19		0.0208	[0.016-0.025] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
730	chr7	19049387	19049388	rs2107595	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Stable angina pectoris	17,894 European ancestry cases, 325,132 European ancestry controls, 18,833 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	7p21.1		rs2107595-A	NR	2E-14		0.0753	[0.056-0.095] unit increase	Affymetrix, Illumina [20456336] (imputed)	N
730	chr7	19049387	19049388	rs2107595	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	7p21.1		rs2107595-A	NR	4E-45		0.0322	[0.028-0.037] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
730	chr7	19049387	19049388	rs2107595	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	145,445 East Asian ancestry individuals	NA	7p21.1		rs2107595-A	0.346439	3E-13		0.0259309	[0.019-0.033] unit increase	Illumina [13477769] (imputed)	N
730	chr7	19049387	19049388	rs2107595	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	20,917 European ancestry cases, 440,906 European ancestry controls, 14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	7p21.1		rs2107595-A	NR	9E-9		0.0597	[0.039-0.08] unit increase	Affymetrix, Illumina [25841367] (imputed)	N
730	chr7	19049387	19049388	rs2107595	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (vasodilators used in cardiac diseases)	5,546 European ancestry cases, 237,113 European ancestry controls, 17,050 East Asian ancestry cases, 161,676 East Asian ancestry controls	NA	7p21.1		rs2107595-A	NR	7E-11		0.0748	[0.052-0.097] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
730	chr7	19049387	19049388	rs2107595	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (salicylic acid and derivatives)	61,583 European ancestry cases, 50,427 European ancestry controls, 41,461 East Asian ancestry cases, 137,265 East Asian ancestry controls	NA	7p21.1		rs2107595-A	NR	3E-8		0.0382	[0.025-0.052] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
730	chr7	19049387	19049388	rs2107595	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (salicylic acid and derivatives)	41,461 East Asian ancestry cases, 137,265 East Asian ancestry controls	NA	7p21.1		rs2107595-A	0.347195488	4E-8		0.048690423	[0.031-0.066] unit increase	Illumina [13429980] (imputed)	N
730	chr7	19049387	19049388	rs2107595	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antithrombotic agents)	67,653 European ancestry cases, 85,986 European ancestry controls, 54,220 East Asian ancestry cases, 124,506 East Asian ancestry controls	NA	7p21.1		rs2107595-A	NR	3E-11		0.0414	[0.029-0.054] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
730	chr7	19049387	19049388	rs2107595	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antithrombotic agents)	54,220 East Asian ancestry cases, 124,506 East Asian ancestry controls	NA	7p21.1		rs2107595-A	0.347195488	2E-10		0.052863136	[0.037-0.069] unit increase	Illumina [13429980] (imputed)	N
730	chr7	19049387	19049388	rs2107595	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	7p21.1		rs2107595-A	NR	1E-8		0.0347	[0.023-0.047] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
730	chr7	19049387	19049388	rs2107595	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Angina pectoris	30,025 European ancestry cases, 440,906 European ancestry controls, 14,007 East Asian ancestry cases, 145,158 East Asian ancestry controls	NA	7p21.1		rs2107595-A	NR	3E-17		0.0806	[0.062-0.099] unit increase	Affymetrix, Illumina [25842036] (imputed)	N
730	chr7	19049387	19049388	rs2107595	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	7p21.1	HDAC9	rs2107595-A	0.176323	1E-8		1.06	[1.04-1.08]	NR [8126035] (imputed)	N
730	chr7	19049387	19049388	rs2107595	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	7p21.1	HDAC9, TWIST1	rs2107595-?	NR	1E-31		0.0695929	[0.058-0.081] unit increase	Illumina [4804024] (imputed)	N
730	chr7	19049387	19049388	rs2107595	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Peripheral artery disease	3,593 Japanese ancestry cases, 208,860 Japanese ancestry controls	NA	7p21.1		rs2107595-A	0.342606004	2E-9		1.1649572	[1.108153749-1.224672338]	Illumina [8919992] (imputed)	N
730	chr7	19049387	19049388	rs2107595	32469254	Matsunaga H	2020-05-29	Circ Genom Precis Med	Transethnic Meta-analysis of Genome-wide Association Studies Identifies Three New Loci and Characterizes Population-specific Differences for Coronary Artery Disease.	Coronary artery disease	15,302 Japanese ancestry cases, 76,014 European and East Asian ancestry cases, 36,140 Japanese ancestry controls, 264,785 European and East Asian ancestry controls	NA	7p21.1	HDAC9, TWIST1	rs2107595-A	0.2	1E-14		1.07	[1.06-1.08]	Illumina [5167567] (imputed)	N
730	chr7	19049387	19049388	rs2107595	32047268	von Berg J	2020-02-11	Eur J Hum Genet	Alternate approach to stroke phenotyping identifies a genetic risk locus for small vessel stroke.	Large artery stroke (TOAST classification)	2,318 European and African ancestry cases, 28,026 European and unknown ancestry controls	NA	7p21.1	HDAC9, TWIST1	rs2107595-?	NR	8E-14		1.2267151	[1.16-1.3]	Illumina [~ 10156805] (imputed)	N
730	chr7	19049387	19049388	rs2107595	32047268	von Berg J	2020-02-11	Eur J Hum Genet	Alternate approach to stroke phenotyping identifies a genetic risk locus for small vessel stroke.	Large artery stroke (CCSp classification)j	2,449 European and African ancestry cases, 28,026 European and unknown ancestry controls	NA	7p21.1	HDAC9, TWIST1	rs2107595-?	NR	1E-12		1.225856	[1.16-1.3]	Illumina [~ 10156805] (imputed)	N
730	chr7	19049387	19049388	rs2107595	32047268	von Berg J	2020-02-11	Eur J Hum Genet	Alternate approach to stroke phenotyping identifies a genetic risk locus for small vessel stroke.	Large artery stroke (CCS or TOAST classification)	3,495 European and African ancestry cases, 28,026 European and unknown ancestry controls	NA	7p21.1	HDAC9, TWIST1	rs2107595-?	NR	4E-16		1.2125576	[1.16-1.27]	Illumina [~ 10156805] (imputed)	N
730	chr7	19049387	19049388	rs2107595	32047268	von Berg J	2020-02-11	Eur J Hum Genet	Alternate approach to stroke phenotyping identifies a genetic risk locus for small vessel stroke.	Large artery stroke (CCS and TOAST classification)	1,328 European and African ancestry cases, 28,026 European and unknown ancestry controls	NA	7p21.1	HDAC9, TWIST1	rs2107595-?	NR	3E-10		1.2383192	[1.16-1.32]	Illumina [~ 10156805] (imputed)	N
730	chr7	19049387	19049388	rs2107595	31659325	Malhotra R	2019-10-28	Nat Genet	HDAC9 is implicated in atherosclerotic aortic calcification and affects vascular smooth muscle cell phenotype.	Abdominal aortic calcification levels	9,417 European ancestry individuals	1,595 African American individuals, 496 Hispanic or Latin American individuals	7p21.1	HDAC9	rs2107595-A	0.17	2E-9	(EA, Hispanic)	6.02	z score increase	Affymetrix, Illumina [9000000] (imputed)	N
730	chr7	19049387	19049388	rs2107595	31285632	Klarin D	2019-07-08	Nat Med	Genome-wide association study of peripheral artery disease in the Million Veteran Program.	Peripheral artery disease	24,009 European ancestry cases, 150,983 European ancestry controls, 5,373 African ancestry cases, 42,485 African ancestry controls, 1,925 Hispanic cases, 18,285 Hispanic controls	5,117 European ancestry cases, 389,291 European ancestry controls	7p21.1	HDAC9	rs2107595-A	0.187	2E-11		1.08	[1.05-1.10]	Affymetrix [at least 20323458] (imputed)	N
730	chr7	19049387	19049388	rs2107595	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	7p21.1	GS1-465N13.1	rs2107595-A	0.151612	2E-8		0.047409747	[0.031-0.064] unit increase	Affymetrix [7288503] (imputed)	N
730	chr7	19049387	19049388	rs2107595	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	7p21.1	TWIST1	rs2107595-A	0.1847	3E-21		0.4172	[0.33-0.5] mmHg increase	Affymetrix [NR] (imputed)	N
730	chr7	19049387	19049388	rs2107595	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	7p21.1	TWIST1	rs2107595-A	0.1834	5E-54		0.5121	[0.45-0.58] mmHg increase	Affymetrix [NR] (imputed)	N
730	chr7	19049387	19049388	rs2107595	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	7p21.1	NR	rs2107595-A	0.3458	3E-10	(East Asian)	0.4189	[0.29-0.55] unit increase	Illumina [6200000] (imputed)	N
730	chr7	19049387	19049388	rs2107595	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Pulse pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 Japanese ancestry individuals	7p21.1	HDAC9	rs2107595-A	0.3456	7E-21	(East Asian)	0.4201	[0.33-0.51] unit increase	Illumina [6200000] (imputed)	N
730	chr7	19049387	19049388	rs2107595	30104761	Zhou W	2018-08-13	Nat Genet	Efficiently controlling for case-control imbalance and sample relatedness in large-scale genetic association studies.	Coronary artery disease	31,355 European ancestry cases, 377,103 European ancestry controls	NA	7p21.1	HDAC9, TWIST1	rs2107595-A	0.152	4E-10				Affymetrix [28000000] (imputed)	N
730	chr7	19049387	19049388	rs2107595	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Stroke	40,585 European ancestry cases, 406,111 European ancestry controls, 17,369 East Asian ancestry cases, 28,195 East Asian ancestry controls, 2,437 South Asian ancestry cases, 6,707 South Asian ancestry controls, 5,541 African American cases, 15,154 African American controls, 365 Asian ancestry cases, 333 Asian ancestry controls, 865 Latin American cases, 692 Latin American controls	NA	7p21.1	HDAC9, TWIST1	rs2107595-?	NR	5E-14				NR [~ 8000000] (imputed)	N
730	chr7	19049387	19049388	rs2107595	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Stroke	40,585 European ancestry cases, 406,111 European ancestry controls	NA	7p21.1	HDAC9, TWIST1	rs2107595-?	NR	4E-11				NR [~ 8000000] (imputed)	N
730	chr7	19049387	19049388	rs2107595	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Ischemic stroke (large artery atherosclerosis)	4,373 European ancestry cases, 406,111 European ancestry controls, 1,626 East Asian ancestry cases, 28,195 East Asian ancestry controls, 355 South Asian ancestry cases, 6,707 South Asian ancestry controls, 259 African American cases, 15,146 African American controls, 34 Asian ancestry cases, 333 Asian ancestry controls, 41 Latin American cases, 692 Latin American controls	NA	7p21.1	HDAC9, TWIST1	rs2107595-?	NR	4E-15				NR [~ 8000000] (imputed)	N
730	chr7	19049387	19049388	rs2107595	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Ischemic stroke (large artery atherosclerosis)	4,373 European ancestry cases, 406,111 European ancestry controls	NA	7p21.1	HDAC9, TWIST1	rs2107595-?	NR	1E-13				NR [~ 8000000] (imputed)	N
730	chr7	19049387	19049388	rs2107595	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Ischemic stroke	34,217 European ancestry cases, 406,111 European ancestry controls, 17,369 East Asian ancestry cases, 28,195 East Asian ancestry controls, 2,437 South Asian ancestry cases, 6,707 South Asian ancestry controls, 5,541 African American cases, 15,146 African American controls, 222 Asian ancestry cases, 333 Asian ancestry controls, 555 Latin American cases, 692 Latin American controls	NA	7p21.1	HDAC9, TWIST1	rs2107595-?	NR	9E-14				NR [~ 8000000] (imputed)	N
730	chr7	19049387	19049388	rs2107595	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Ischemic stroke	34,217 European ancestry cases, 406,111 European ancestry controls	NA	7p21.1	HDAC9, LOC105375174	rs2107595-?	NR	2E-11				NR [~ 8000000] (imputed)	N
730	chr7	19049387	19049388	rs2107595	29273593	Duan L	2017-12-22	Stroke	Novel Susceptibility Loci for Moyamoya Disease Revealed by a Genome-Wide Association Study.	Moyamoya disease	755 Han Chinese ancestry cases, 2,031 Han Chinese ancestry controls	724 Han Chinese ancestry cases, 3,043 Han Chinese ancestry controls	7p21.1	HDAC9	rs2107595-A	0.32	1E-29		1.64	[NR]	Illumina [747089]	N
730	chr7	19049387	19049388	rs2107595	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	7p21.1	intergenic	rs2107595-A	0.1767	1E-24		0.0752	[0.061-0.09] unit increase	Affymetrix [at least 7947838] (imputed)	N
730	chr7	19049387	19049388	rs2107595	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	7p21.1	intergenic	rs2107595-A	0.1802	4E-24		0.0815	[0.066-0.097] unit increase	NR [8041861] (imputed)	N
730	chr7	19049387	19049388	rs2107595	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	7p21.1	intergenic	rs2107595-A	0.18	4E-24		0.082	[0.066-0.098] unit increase	Affymetrix [7947838] (imputed)	N
730	chr7	19049387	19049388	rs2107595	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Pulse pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	7p21.1	HDAC9	rs2107595-A	0.169	4E-6	(EA, initial)	0.291	[0.17-0.41] unit increase	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
730	chr7	19049387	19049388	rs2107595	28714975	Nelson CP	2017-07-17	Nat Genet	Association analyses based on false discovery rate implicate new loci for coronary artery disease.	Coronary artery disease (myocardial infarction, percutaneous transluminal coronary angioplasty, coronary artery bypass grafting, angina or chromic ischemic heart disease)	18,467 European and unknown ancestry cases, 45,264 European and unknown ancestry controls	57,347 European and unknown ancestry cases, 219,521 European and unknown ancestry controls	7p21.1	HDAC9	rs2107595-A	0.182	3E-13		1.08	[1.06-1.10]	Affymetrix [9149595] (imputed)	N
730	chr7	19049387	19049388	rs2107595	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	7p21.1	HDAC9, TWIST1	rs2107595-G		9E-14		0.379	unit decrease	Affymetrix [at least 2696785] (imputed)	N
730	chr7	19049387	19049388	rs2107595	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	7p21.1	HDAC9, TWIST1	rs2107595-G		3E-15		0.366	unit decrease	Affymetrix [at least 2696785] (imputed)	N
730	chr7	19049387	19049388	rs2107595	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	7p21.1	HDAC9, TWIST1	rs2107595-G		1E-11	(EA)	0.363	unit decrease	Affymetrix [at least 2696785] (imputed)	N
730	chr7	19049387	19049388	rs2107595	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	7p21.1	HDAC9, TWIST1	rs2107595-G		1E-37		0.435	unit decrease	Affymetrix [at least 2696785] (imputed)	N
730	chr7	19049387	19049388	rs2107595	26708676	Pulit SL	2015-12-18	Lancet Neurol	Loci associated with ischaemic stroke and its subtypes (SiGN): a genome-wide association study.	Ischemic stroke	14,300 European ancestry cases, 1,609 African ancestry cases, 942 Hispanic cases, 26,690 European ancestry controls, 3,354 African ancestry controls, 2,429 Hispanic controls	996 African ancestry cases, 219 East Asian ancestry cases, 17,334 European ancestry cases, 548 Hispanic cases, 2,385 South Asian ancestry cases, 5,811 African ancestry controls, 329 East Asian ancestry controls, 350,928 European ancestry controls, 686 Hispanic controls, 5,193 South Asian ancestry controls	7p21.1	HDAC9	rs2107595-A	0.157	9E-10		1.09	[1.06-1.12]	Illumina [up to 15400000] (imputed)	N
730	chr7	19049387	19049388	rs2107595	26390057	Kato N	2015-09-21	Nat Genet	Trans-ancestry genome-wide association study identifies 12 genetic loci influencing blood pressure and implicates a role for DNA methylation.	Pulse pressure	31,516 East Asian ancestry individuals,  35,352 European ancestry individuals, 33,126 South Asian ancestry individuals	87,205 individuals, 48,268 East Asian ancestry individuals, 68,456 European ancestry individuals and 16,328 South Asian ancestry individuals	7p21.1	HDAC9	rs2107595-A	0.230914811571251	4E-11		0.30704787	[0.22-0.4] mmHg increase	Affymetrix, Illumina, Perlegen [~ 2100000] (imputed)	N
730	chr7	19049387	19049388	rs2107595	26343387	Nikpay M	2015-09-07	Nat Genet	A comprehensive 1,000 Genomes-based genome-wide association meta-analysis of coronary artery disease.	Coronary artery disease	42,096 European ancestry cases, 361 African American cases, 758 Hispanic American cases, 12,658 South Asian ancestry cases, 1,802 Lebanese ancestry cases, 3,614 East Asian ancestry cases, 99,121 European ancestry controls, 2,778 African American controls, 3,337 Hispanic American controls, 12,899 South Asian ancestry controls, 466 Lebanese ancestry controls, 7,709 East Asian ancestry controls	NA	7p21.1	HDAC9	rs2107595-A	0.20047	8E-11		1.08	[1.05- 1.10]	Affymetrix, Illumina [8600000] (imputed)	N
730	chr7	19049387	19049388	rs2107595	24262325	Dichgans M	2013-11-21	Stroke	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Large artery stroke	2,167 cases, 49,159 controls	NA	7p21.1	HDAC9	rs2107595-A	NR	3E-12		1.39	[1.27-1.52]	Affymetrix, Illumina [~ 2400000] (imputed)	N
730	chr7	19049387	19049388	rs2107595	24262325	Dichgans M	2013-11-21	Stroke	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Coronary artery disease or large artery stroke	2,167 Large artery stroke cases, 22,233 Coronary artery disease cases, ~ 75,921 controls	NA	7p21.1	HDAC9	rs2107595-A	NR	3E-12				Affymetrix, Illumina [up to 2500000] (imputed)	N
730	chr7	19049387	19049388	rs2107595	23041239	Traylor M	2012-10-05	Lancet Neurol	Genetic risk factors for ischaemic stroke and its subtypes (the METASTROKE collaboration): a meta-analysis of genome-wide association studies.	Stroke (ischemic)	12,389 European ancestry cases, 62,004 European ancestry controls	1,322 Pakistani ancestry cases, 1,143 Pakistani ancestry controls, 12,025 European ancestry cases, 27,940 European ancestry controls	7p21.1	HDAC9	rs2107595-A	0.16	4E-6	(IS)	1.12	[1.07-1.17]	Affymetrix, Illumina [NR] (imputed)	N
730	chr7	19049387	19049388	rs2107595	23041239	Traylor M	2012-10-05	Lancet Neurol	Genetic risk factors for ischaemic stroke and its subtypes (the METASTROKE collaboration): a meta-analysis of genome-wide association studies.	Stroke (ischemic)	12,389 European ancestry cases, 62,004 European ancestry controls	1,322 Pakistani ancestry cases, 1,143 Pakistani ancestry controls, 12,025 European ancestry cases, 27,940 European ancestry controls	7p21.1	HDAC9	rs2107595-A	0.16	2E-16	(LVD)	1.39	[1.27-1.53]	Affymetrix, Illumina [NR] (imputed)	N
730	chr7	19052732	19052733	rs57301765	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Stable angina pectoris	18,833 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	7p21.1		rs57301765-A	0.345198711	4E-8		0.06895587	[0.044-0.094] unit increase	Illumina [13427711] (imputed)	N
730	chr7	19052732	19052733	rs57301765	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Peripheral artery disease	7,114 European ancestry cases, 475,964 European ancestry controls, 4,112 East Asian ancestry cases, 173,601 East Asian ancestry controls	NA	7p21.1		rs57301765-A	NR	8E-12		0.1146	[0.082-0.148] unit increase	Affymetrix, Illumina [25844651] (imputed)	N
730	chr7	19052732	19052733	rs57301765	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Peripheral artery disease	4,112 East Asian ancestry cases, 173,601 East Asian ancestry controls	NA	7p21.1		rs57301765-A	0.346944102	3E-8		0.13457833	[0.087-0.182] unit increase	Illumina [13429824] (imputed)	N
730	chr7	19052732	19052733	rs57301765	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 142,336 Japanese ancestry controls	NA	7p21.1	HDAC9, TWIST1	rs57301765-?	NR	8E-9		0.0597071	[0.039-0.08] unit increase	Illumina [19707525] (imputed)	N
730	chr7	19052732	19052733	rs57301765	31659325	Malhotra R	2019-10-28	Nat Genet	HDAC9 is implicated in atherosclerotic aortic calcification and affects vascular smooth muscle cell phenotype.	Abdominal aortic calcification levels	9,417 European ancestry individuals	1,595 African American individuals, 496 Hispanic or Latin American individuals	7p21.1	HDAC9	rs57301765-A	0.17	1E-9	(EA)	6.07	z score increase	Affymetrix, Illumina [9000000] (imputed)	N
730	chr7	19052732	19052733	rs57301765	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	7p21.1		rs57301765-?	NR	8E-23				NR [~ 8900000] (imputed)	N
730	chr7	19052732	19052733	rs57301765	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	7p21.1	HDAC9, TWIST1	rs57301765-A	0.35	6E-7	(Japanese)	0.3959	[0.24-0.55] unit increase	Illumina [6200000] (imputed)	N
730	chr7	19052732	19052733	rs57301765	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Pulse pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 Japanese ancestry individuals	7p21.1	HDAC9, TWIST1	rs57301765-A	0.3507	6E-14	(Japanese)	0.4122	[0.3-0.52] unit increase	Illumina [6200000] (imputed)	N
730	chr7	19052732	19052733	rs57301765	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Pulse pressure	136,249 Japanese ancestry individuals	NA	7p21.1	HDAC9, TWIST1	rs57301765-?	NR	5E-13		0.02889	[0.021-0.037] unit increase	Illumina [6108953] (imputed)	N
730	chr7	19062774	19062775	rs2717329	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	7p21.1		rs2717329-?	NR	9E-10				NR [~ 8900000] (imputed)	N
730	chr7	19065011	19065012	rs2965030	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	7p21.1	NR	rs2965030-A	0.0350237	1E-8		0.0485651	[0.032-0.065] unit decrease	NR [19129689] (imputed)	N
730	chr7	19096223	19096224	rs73071393	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		7p21.1	NR	rs73071393-G	NR	5E-8		0.0809223	NR unit decrease	NR [NR] (imputed)	N
730	chr7	19106538	19106539	rs430	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	7p21.1	TWIST1	rs430-A	0.016	4E-7	(Urinary free epinephrine )	0.03	[NR] nmol/d increase	Illumina [899892]	N
730	chr7	19133071	19133072	rs10225279	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		7p21.1	NR	rs10225279-T	NR	4E-11		0.0411354	NR unit decrease	NR [NR] (imputed)	N
731	chr7	19137856	19137857	rs6964466	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	7p21.1	NR	rs6964466-A	0.392554	3E-20		0.0307699	[0.024-0.037] unit decrease	NR [19129689] (imputed)	N
731	chr7	19138999	19139000	rs28693939	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	7p21.1		rs28693939-?	NR	3E-33				NR [~ 8900000] (imputed)	N
731	chr7	19141258	19141259	rs17140672	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	7p21.1	NR	rs17140672-G	0.168928	4E-17		0.035028	[0.027-0.043] unit decrease	NR [19129689] (imputed)	N
731	chr7	19145325	19145326	rs73325511	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	7p21.1	NR	rs73325511-C	0.0729641	2E-24		0.0602241	[0.049-0.072] unit decrease	NR [19129689] (imputed)	N
731	chr7	19160896	19160897	rs10275272	25866641	Xu W	2015-03-19	Biomark Res	A genome wide association study on Newfoundland colorectal cancer patients' survival outcomes.	Survival in rectal cancer	171 European ancestry cases	NA	7p21.1	intergenic	rs10275272-?		8E-6	(disease-free survival)	3.19	[1.92-5.31]	Illumina [729737]	N
731	chr7	19164879	19164880	rs56868568	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	7p21.1	TWIST1, FERD3L	rs56868568-G	0.001	1E-6		34.03	[3.52-329.29]	Illumina [1556551]	N
731	chr7	19175405	19175406	rs12154446	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	7p21.1	FERD3L	rs12154446-G	0.726867	4E-9		0.0121958	[0.0081-0.0162] unit decrease	NR [13737936] (imputed)	N
731	chr7	19186885	19186886	rs12700019	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	7p21.1		rs12700019-?	NR	4E-9				NR [~ 8900000] (imputed)	N
731	chr7	19217203	19217204	rs17140821	27790247	He L	2016-11-03	Front Genet	Pleiotropic Meta-Analyses of Longitudinal Studies Discover Novel Genetic Variants Associated with Age-Related Diseases.	Age-related diseases, mortality and associated endophenotypes	9,618 European ancestry individuals	19,796 European ancestry individuals	7p21.1	NR	rs17140821-?	NR	5E-7				Affymetrix [NR]	N
731	chr7	19217203	19217204	rs17140821	27790247	He L	2016-11-03	Front Genet	Pleiotropic Meta-Analyses of Longitudinal Studies Discover Novel Genetic Variants Associated with Age-Related Diseases.	Age-related diseases and mortality	9,618 European ancestry individuals	19,796 European ancestry individuals	7p21.1	NR	rs17140821-?	NR	5E-7				Affymetrix [NR]	N
731	chr7	19217523	19217524	rs114497090	28632202	Witt SH	2017-06-20	Transl Psychiatry	Genome-wide association study of borderline personality disorder reveals genetic overlap with bipolar disorder, major depression and schizophrenia.	Borderline personality disorder	998 European ancestry cases, 1,545 European ancestry controls	NA	7p21.1	intergenic	rs114497090-A	0.005	9E-6		6.1683	[5.36-6.97]	Illumina [10736316] (imputed)	N
731	chr7	19228307	19228308	rs540810730	31675503	Gurdasani D	2019-10-01	Cell	Uganda Genome Resource Enables Insights into Population History and Genomic Discovery in Africa.	Serum albumin levels	14,126 African ancestry individuals	NA	7p21.1	NR	rs540810730-C	0.964	3E-9		0.29	unit increase	Affymetrix, Illumina [at least 24423923] (imputed)	N
731	chr7	19248277	19248278	rs17140875	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	7p21.1		rs17140875-T	0.078061	9E-20		0.0360089	[0.028-0.044] unit decrease	Illumina [13479295] (imputed)	N
731	chr7	19248277	19248278	rs17140875	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	7p21.1	FERD3L, TWISTNB	rs17140875-?	NR	7E-20		0.0513344	[0.04-0.062] unit decrease	Illumina [27896057] (imputed)	N
731	chr7	19248277	19248278	rs17140875	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7p21.1		rs17140875-?	NR	3E-19				NR [~ 8900000] (imputed)	N
731	chr7	19248277	19248278	rs17140875	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	7p21.1	FERD3L	rs17140875-A	0.051	5E-6	(Sleep duration )	0.02	[NR] min/d increase	Illumina [899892]	N
731	chr7	19267240	19267241	rs143863887	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	7p21.1	AC003986.5	rs143863887-G	NR	2E-9		0.0421031	[0.028-0.056] unit decrease	Affymetrix [321114] (imputed)	N
731	chr7	19267240	19267241	rs143863887	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	7p21.1	AC003986.5	rs143863887-G	NR	3E-8		0.0386543	[0.025-0.052] unit decrease	Affymetrix [323123] (imputed)	N
732	chr7	19296967	19296968	rs10233425	24931836	Diekstra FP	2014-06-27	Ann Neurol	C9orf72 and UNC13A are shared risk loci for amyotrophic lateral sclerosis and frontotemporal dementia: a genome-wide meta-analysis.	Amyotrophic lateral sclerosis	4,377 European ancestry cases, 13,017 European ancestry controls	NA	7p21.1	intergenic	rs10233425-C	0.01	8E-6		1.88	[NR]	Illumina [~ 1400000] (imputed)	N
732	chr7	19349730	19349731	rs17141120	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7p21.1		rs17141120-?	NR	1E-11				NR [~ 8900000] (imputed)	N
733	chr7	19404647	19404648	rs12667733	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Major depressive disorder (ICD-10 coded)	8,276 British ancestry cases, 209,308 British ancestry controls	NA	7p21.1	NR	rs12667733-G	0.4964	6E-8		0.0032	[0.002-0.0044] unit decrease	NR [7666894] (imputed)	N
733	chr7	19477980	19477981	rs7780001	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	7p21.1	FERD3L, TWISTNB	rs7780001-?		2E-9				Affymetrix, Illumina [NR] (imputed)	N
733	chr7	19477980	19477981	rs7780001	25085501	Bunyavanich S	2014-08-02	BMC Med Genomics	Integrated genome-wide association, coexpression network, and expression single nucleotide polymorphism analysis identifies novel pathway in allergic rhinitis.	Allergic rhinitis in non-asthmatics	249 European ancestry cases, 164 Latino cases, 248 African American/Afro-Caribbean cases, 674 European ancestry controls, 588 Latino controls, 464 African American/Afro-Caribbean controls	NA	7p21.1	NR	rs7780001-?	0.13	4E-7		1.64	[1.25-2.44]	Affymetrix, Illumina [NR] (imputed)	N
733	chr7	19477980	19477981	rs7780001	25085501	Bunyavanich S	2014-08-02	BMC Med Genomics	Integrated genome-wide association, coexpression network, and expression single nucleotide polymorphism analysis identifies novel pathway in allergic rhinitis.	Allergic rhinitis	872 European ancestry cases, 1,193 Latino cases, 647 African American/Afro-Caribbean cases, 1,162 European ancestry controls, 1,133 Latino controls, 626 African American/Afro-Caribbean controls	NA	7p21.1	FERD3L	rs7780001-?	NR	2E-8		1.37	[1.19-1.61]	Affymetrix, Illumina [NR] (imputed)	N
733	chr7	19520976	19520977	rs73685918	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	7p21.1	NR	rs73685918-A	0.0534	2E-8	(Lateral Orbitofrontal)	17.036133	[11.12-22.96] unit increase	Affymetrix, Illumina [NR]	N
733	chr7	19528696	19528697	rs76526869	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	7p21.1	AC007091.1	rs76526869-A	0.0244	6E-6		0.0954	[0.054-0.137] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
733	chr7	19529483	19529484	rs2024348	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	7p21.1	FERD3L, TWISTNB	rs2024348-?	NR	6E-10		0.040769465	[0.028-0.054] unit increase	Illumina [27896057] (imputed)	N
734	chr7	19534587	19534588	rs540063109	34586716	Chen J	2021-09-29	Mol Genet Genomic Med	Heritability and genome-wide association study of blood pressure in Chinese adult twins.	Systolic blood pressure	137 Chinese ancestry twins	NA	7p21.1		rs540063109-?	NR	1E-7				Illumina [7401356] (imputed)	N
734	chr7	19534587	19534588	rs540063109	34586716	Chen J	2021-09-29	Mol Genet Genomic Med	Heritability and genome-wide association study of blood pressure in Chinese adult twins.	Mean arterial pressure	137 Chinese ancestry twins	NA	7p21.1		rs540063109-?	NR	4E-6				Illumina [7401356] (imputed)	N
734	chr7	19534587	19534588	rs540063109	33539483	Li Z	2021-02-04	PLoS One	Bivariate genome-wide association study (GWAS) of body mass index and blood pressure phenotypes in northern Chinese twins.	Systolic blood pressure and diastolic blood pressure (bivariate analysis)	274 Chinese ancestry dizygotic twins	NA	7p21.1	TMEM196	rs540063109-?	NR	3E-8				Illumina [7401356] (imputed)	N
734	chr7	19534587	19534588	rs540063109	33539483	Li Z	2021-02-04	PLoS One	Bivariate genome-wide association study (GWAS) of body mass index and blood pressure phenotypes in northern Chinese twins.	Body mass index and systolic blood pressure (bivariate analysis)	274 Chinese ancestry dizygotic twins	NA	7p21.1	TMEM196	rs540063109-?	NR	2E-8				Illumina [7401356] (imputed)	N
734	chr7	19542959	19542960	rs117584411	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 6, height of vermillion lower lip)	2,187 European ancestry individuals	NA	7p21.1	NR	rs117584411-T	0.03187	4E-6		0.4036	[0.23-0.58] unit increase	Illumina [10677593] (imputed)	N
734	chr7	19543014	19543015	rs75695558	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	7p21.1	NR	rs75695558-?	NR	4E-11				Affymetrix [~ 8270000] (imputed)	N
734	chr7	19549162	19549163	rs62446652	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	7p21.1	NR	rs62446652-?	NR	8E-10				Affymetrix [~ 8270000] (imputed)	N
734	chr7	19549162	19549163	rs62446652	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	7p21.1	FERD3L, TWISTNB	rs62446652-?	NR	3E-15		0.03236783	[0.024-0.04] unit increase	Illumina [27896057] (imputed)	N
734	chr7	19550246	19550247	rs12534570	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (multi-trait analysis)	90,939 European ancestry individuals	NA	7p21.1	FERD3L, TWISTNB	rs12534570-G	0.34	2E-9		0.0055	NR unit increase	Affymetrix, Illumina [8002429] (imputed)	N
734	chr7	19563836	19563837	rs2192483	29532581	Hallfors J	2018-03-13	Addict Biol	Genome-wide association study in Finnish twins highlights the connection between nicotine addiction and neurotrophin signaling pathway.	Nicotine dependence symptom count	1,715 Finnish ancestry ever smoker individuals from 739 families	NA	7p21.1	NR	rs2192483-G	0.151	4E-6		0.38	[0.22-0.54] unit decrease	Illumina [9469131] (imputed)	N
734	chr7	19566285	19566286	rs6461441	29532581	Hallfors J	2018-03-13	Addict Biol	Genome-wide association study in Finnish twins highlights the connection between nicotine addiction and neurotrophin signaling pathway.	Nicotine dependence	873 Finnish ancestry cases and 842 Finnish ancestry controls from 739 families	NA	7p21.1	NR	rs6461441-C	0.15607	9E-7		0.1180899	[0.07-0.16] unit decrease	Illumina [9469131] (imputed)	N
734	chr7	19566512	19566513	rs182161269	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	7p21.1	AC007091.1	rs182161269-A	0.9963	4E-6		0.4129	[0.24-0.59] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
734	chr7	19572000	19572001	rs12700058	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	7p21.1		rs12700058-?	NR	5E-14		0.0157039	[0.011-0.02] unit increase	Affymetrix [20259828] (imputed)	N
734	chr7	19572579	19572580	rs12700059	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (min-P)	26,502 European ancestry individuals	NA	7p21.1	RALGPS2, ANGPTL1	rs12700059-?		8E-17				NR [7428630] (imputed)	N
734	chr7	19572579	19572580	rs12700059	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (min-P)	26,502 European ancestry individuals	NA	7p21.1	NR	rs12700059-?		4E-16				NR [7428630] (imputed)	N
734	chr7	19591564	19591565	rs12673167	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	7p21.1	TWISTNB	rs12673167-C	0.714304	1E-14		0.0155265	[0.012-0.019] unit decrease	NR [13737936] (imputed)	N
734	chr7	19599866	19599867	rs17354370	30339177	Shane B	2018-10-19	Am J Clin Nutr	The 677C->T variant of MTHFR is the major genetic modifier of biomarkers of folate status in a young, healthy Irish population.	Plasma homocysteine levels	2,232 Irish ancestry individuals	NA	7p21.1	TWISTNB	rs17354370-?	NR	4E-9		0.02096	[0.014-0.028] ?mol/L decrease	Illumina [758443]	N
734	chr7	19609721	19609722	rs6966112	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	7p21.1		rs6966112-?	NR	5E-16				NR [~ 8900000] (imputed)	N
734	chr7	19611306	19611307	rs10230207	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	8,072 individuals	NA	7p21.1		rs10230207-G	0.35	2E-9				NR [13131314] (imputed)	N
734	chr7	19611306	19611307	rs10230207	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	7p21.1		rs10230207-G	0.35	3E-267		34.93	z score increase	Affymetrix [9061022] (imputed)	N
734	chr7	19611306	19611307	rs10230207	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	7p21.1		rs10230207-G	0.35	6E-82		19.18	z score increase	Affymetrix [9061022] (imputed)	N
734	chr7	19611306	19611307	rs10230207	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	7p21.1		rs10230207-G	0.35	4E-56		15.78	z score increase	Affymetrix [9061022] (imputed)	N
734	chr7	19611306	19611307	rs10230207	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	7p21.1	NR	rs10230207-G	0.3713	1E-17				NR [9056863] (imputed)	N
734	chr7	19611306	19611307	rs10230207	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	7p21.1	MAP2	rs10230207-?		3E-19				NR [7428630] (imputed)	N
734	chr7	19611306	19611307	rs10230207	25256182	Foroud T	2014-09-25	Stroke	Genome-wide association study of intracranial aneurysm identifies a new association on chromosome 7.	Intracranial aneurysm	2,617 European ancestry cases, 2,548 European ancestry controls	1,516 European ancestry cases, 5,321 European ancestry controls	7p21.1	TWISTNB, MIR3146, TMEM196	rs10230207-T	NR	1E-9		1.21	[1.14-1.28]	Affymetrix [685281] (imputed)	N
734	chr7	19612304	19612305	rs2192476	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	7p21.1	AC007091.1	rs2192476-C	NR	5E-11		0.0191728	[0.013-0.025] unit increase	Affymetrix [321016] (imputed)	N
734	chr7	19612704	19612705	rs12538102	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	7p21.1	NR	rs12538102-A	0.372	1E-17				NR [9056863] (imputed)	N
734	chr7	19616521	19616522	rs4470914	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	7p21.1	TWISTNB	rs4470914-T	0.28	2E-9		0.04	[0.024-0.056] unit increase	Affymetrix, Illumina [2704730] (imputed)	N
734	chr7	19616521	19616522	rs4470914	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	7p21.1	TWISTNB	rs4470914-T	0.18	9E-10		0.029	[NR] unit increase	Affymetrix, Illumina [2834208] (imputed)	N
734	chr7	19619102	19619103	rs7782309	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 86)	19,670 European ancestry individuals	NA	7p21.1		rs7782309-?	NR	2E-51				NR [9705931] (imputed)	N
734	chr7	19619642	19619643	rs7805790	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	7p21.1	NR	rs7805790-?	NR	3E-9	(cerebellar vermal lobules I V)			NR [9227495] (imputed)	N
734	chr7	19626621	19626622	rs4721802	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	7p21.1	EPHA4	rs4721802-?		1E-9				NR [7428630] (imputed)	N
734	chr7	19626621	19626622	rs4721802	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	7p21.1	NR	rs4721802-?		7E-30				NR [7428630] (imputed)	N
734	chr7	19626621	19626622	rs4721802	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	7p21.1	NR	rs4721802-A	0.6466	4E-20	(Lateral Orbitofrontal)	12.968134	[10.2-15.73] unit decrease	Affymetrix, Illumina [NR]	N
734	chr7	19627951	19627952	rs4518562	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (adjusted for vertical disc diameter)	67,040 British ancestry individuals	NA	7p21.1	TWISTNB	rs4518562-A	0.66	8E-10		0.00579	[0.0039-0.0076] unit decrease	Affymetrix [at least 8002429] (imputed)	N
734	chr7	19628954	19628955	rs7806003	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical thickness (MOSTest)	26,502 European ancestry individuals	NA	7p21.1	SDCCAG8, AKT3	rs7806003-?		9E-13				NR [7428630] (imputed)	N
734	chr7	19632594	19632595	rs57176772	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	7p21.1	AC007091.1	rs57176772-A	NR	1E-10		0.0279211	[0.019-0.036] unit increase	Affymetrix [321114] (imputed)	N
734	chr7	19632594	19632595	rs57176772	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7p21.1		rs57176772-?	NR	1E-39				NR [~ 8900000] (imputed)	N
735	chr7	19716490	19716491	rs7804352	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	7p21.1	MGC42090	rs7804352-?	NR	6E-6	(LPC 18:1)	0.27559966	[0.16-0.4] unit increase	Affymetrix [at least 2500000] (imputed)	N
735	chr7	19716490	19716491	rs7804352	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	7p21.1	MGC42090	rs7804352-?	NR	3E-6	(LPC 18:2)	0.28294468	[0.16-0.4] unit increase	Affymetrix [at least 2500000] (imputed)	N
735	chr7	19783976	19783977	rs2158379	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	7p21.1		rs2158379-?	NR	4E-10				NR [~ 8900000] (imputed)	N
735	chr7	19785887	19785888	rs4721823	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	7p21.1	NR	rs4721823-?	NR	7E-10				Affymetrix [~ 8270000] (imputed)	N
735	chr7	19785887	19785888	rs4721823	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	7p21.1	NA	rs4721823-C	0.1426	5E-9		0.0143	[0.0096-0.019] unit decrease	NR [~ 27400000] (imputed)	N
735	chr7	19786339	19786340	rs17452630	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	7p21.1	TMEM196	rs17452630-T	0.9663	1E-7		0.0947	[0.06-0.13] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
736	chr7	19794295	19794295	rs71017072	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Rubella	12,000 European ancestry cases, 71,597 European ancestry controls	NA	7p21.1	NR	rs71017072-?	NR	9E-7		0.1165	[0.07-0.163] unit decrease	Illumina [at least 560000] (imputed)	N
736	chr7	19805479	19805480	rs6977660	17903292	Hwang SJ	2007-09-19	BMC Med Genet	A genome-wide association for kidney function and endocrine-related traits in the NHLBI's Framingham Heart Study.	Thyroid stimulating hormone levels	883 individuals	NA	7p21.1	intergenic	rs6977660-?	NR	4E-6				Affymetrix [70897]	N
736	chr7	19822004	19822005	rs6959875	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	7p21.1	TWISTNB	rs6959875-?	NR	8E-7	(carnitine)	0.27015445	[0.16-0.38] unit increase	Affymetrix [at least 2500000] (imputed)	N
736	chr7	19843796	19843797	rs10267417	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	7p21.1	TMEM196, TWISTNB, MIR3146, RPL21P28	rs10267417-T	NR	6E-6	(sleep duration, weekdays)	0.3287	[0.19-0.47] unit increase	Affymetrix [7141204] (imputed)	N
736	chr7	19870964	19870965	rs12666118	34941638	Avasthi KK	2021-12-08	Pediatr Rep	Identification of Novel Genomic Variations in Susceptibility to Nonsyndromic Cleft Lip and Palate Patients.	Nonsyndromic cleft lip with or without cleft palate	86 Indian ancestry cases, 10 Indian ancestry controls	NA	7p21.1		rs12666118-?	NR	5E-7				Affymetrix [810906]	N
737	chr7	20032182	20032183	rs73686309	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (severe respiratory symptoms vs population)	1,128 European ancestry cases, 679,531 European ancestry controls, 245 Hispanic or Latin American cases, 94,237 Hispanic or Latin American controls, 74 Black or African American cases, 22,383 Black or African American controls	NA	7p21.1		rs73686309-?	NR	1E-5		0.8073195	[0.45-1.16] unit decrease	Illumina [9906551] (imputed)	N
737	chr7	20043653	20043654	rs38157	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	7p21.1	NR	rs38157-C	NR	9E-11		0.0164	[0.012-0.021] unit increase	Affymetrix [9000000] (imputed)	N
737	chr7	20047574	20047575	rs38152	20041166	Fellay J	2009-12-24	PLoS Genet	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	7p21.1	intergenic	rs38152-?	NR	7E-8	(progression)			Illumina [NR]	N
737	chr7	20051286	20051287	rs13328356	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	7p21.1		rs13328356-?	NR	1E-15		0.0204709	[0.016-0.025] unit increase	Affymetrix [20259828] (imputed)	N
737	chr7	20051286	20051287	rs13328356	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	7p21.1	LOC101927668	rs13328356-C	0.765874	4E-9		0.0236547	[0.016-0.031] unit increase	NR [17166351] (imputed)	N
737	chr7	20051286	20051287	rs13328356	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	7p21.1	LOC101927668	rs13328356-C	0.765575	5E-6	(women)	0.0234648	[0.013-0.034] unit increase	NR [17166351] (imputed)	N
737	chr7	20052859	20052860	rs11763267	33097703	Surakka I	2020-10-23	Nat Commun	MEPE loss-of-function variant associates with decreased bone mineral density and increased fracture risk.	Ultradistal forearm bone mineral density	21,907 European ancestry individuals	NA	7p21.1	NR	rs11763267-?	0.811709567904472	3E-6		0.06360473	[0.037-0.09] SD units increase	Illumina [11603265] (imputed)	N
737	chr7	20052859	20052860	rs11763267	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	7p21.1	LOC101927668	rs11763267-T	0.80613	7E-17		0.0192521	[0.015-0.024] unit increase	NR [13737936] (imputed)	N
737	chr7	20052859	20052860	rs11763267	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	7p21.1		rs11763267-?	NR	2E-20				NR [~ 8900000] (imputed)	N
737	chr7	20052859	20052860	rs11763267	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	7p21.1		rs11763267-?	NR	2E-17		0.0228397	[0.018-0.028] unit increase	Affymetrix [20259828] (imputed)	N
738	chr7	20063956	20063957	rs38137	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	7p21.1	TMEM196, MACC1	rs38137-G	0.37	4E-9		5.87	z-score increase	Affymetrix [4311822] (imputed)	N
738	chr7	20071113	20071114	rs38129	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	7p21.1		rs38129-G	NR	1E-9		0.0125	[0.0084-0.0166] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
738	chr7	20086981	20086982	rs6954796	23738518	Luciano M	2013-06-05	Genes Brain Behav	A genome-wide association study for reading and language abilities in two population cohorts.	Non-word repetition	6,649 European ancestry children and adolescents	NA	7p21.1	intergenic	rs6954796-C	0.13	2E-6		0.124	[0.073-0.175] unit increase	Illumina [~ 2400000] (imputed)	N
739	chr7	20212350	20212351	rs10085691	30287806	Zhou H	2018-10-04	Transl Psychiatry	Genome-wide association study identifies glutamate ionotropic receptor GRIA4 as a risk gene for comorbid nicotine dependence and major depression.	Nicotine dependence and major depression (severity of comorbidity)	3,724 African American individuals	NA	7p21.1	MACC1	rs10085691-T	0.875	6E-6		0.7226	[0.41-1.04] unit increase	Illumina [9520174] (imputed)	N
739	chr7	20255704	20255705	rs3095008	23648065	Low SK	2013-05-04	Cancer Sci	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (etoposide)	54 Japanese ancestry cases, 39 Japanese ancestry controls	NA	7p21.1	MACC1	rs3095008-T	0.846	9E-6	(Dominant model)			Illumina [733202]	N
739	chr7	20286695	20286696	rs6950624	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	7p21.1	NR	rs6950624-?	NR	7E-15				Affymetrix [NR]	N
739	chr7	20292133	20292134	rs4719608	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	7p21.1	intergenic	rs4719608-A	0.2686	4E-6		0.0329	[0.019-0.047] unit increase	NR [8041861] (imputed)	N
740	chr7	20321494	20321495	rs2529029	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7p21.1	NR	rs2529029-C	0.01916	1E-8	(FAHD1)	0.08087	NR unit increase	Illumina [1671387] (imputed)	N
740	chr7	20327368	20327369	rs62453057	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	7p21.1	LOC101927769	rs62453057-A	0.824991	4E-15		0.0189031	[0.014-0.024] unit decrease	NR [13737936] (imputed)	N
740	chr7	20331712	20331713	rs3095208	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	7p21.1		rs3095208-?	NR	1E-12		0.0164952	[0.012-0.021] unit decrease	Affymetrix [20259828] (imputed)	N
740	chr7	20331712	20331713	rs3095208	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	7p21.1	LOC101927769	rs3095208-T	0.740195	5E-9	(women)	0.0283616	[0.018-0.039] unit decrease	NR [17166351] (imputed)	N
740	chr7	20331712	20331713	rs3095208	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	7p21.1	LOC101927769	rs3095208-T	0.739792	9E-12		0.0248873	[0.017-0.032] unit decrease	NR [17166351] (imputed)	N
740	chr7	20333434	20333435	rs118064243	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	7p21.1	AC099342.1	rs118064243-A	NR	6E-9		0.0547439	[0.036-0.073] unit decrease	Affymetrix [321114] (imputed)	N
740	chr7	20339106	20339107	rs35129652	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	7p21.1		rs35129652-?	NR	4E-19				NR [~ 8900000] (imputed)	N
740	chr7	20342583	20342583	rs747769697	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	7p21.1	AC099342.1	rs747769697-C	NR	3E-9		0.0321504	[0.021-0.043] unit decrease	Affymetrix [321114] (imputed)	N
740	chr7	20344125	20344126	rs73084574	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	7p21.1	AC099342.1	rs73084574-A	NR	4E-8		0.0320906	[0.021-0.044] unit decrease	Affymetrix [321114] (imputed)	N
740	chr7	20344125	20344126	rs73084574	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	7p21.1	NR	rs73084574-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
740	chr7	20344125	20344126	rs73084574	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	7p21.1	NR	rs73084574-?	NR	3E-15				Affymetrix [~ 8270000] (imputed)	N
740	chr7	20344125	20344126	rs73084574	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma and/or waist-to-hip ratio adjusted for BMI	28,862 European ancestry cases, 422,048 European ancestry controls, 6,780 European ancestry individuals	NA	7p21.1	NR	rs73084574-G	NR	4E-12				Affymetrix [~ 8270000] (imputed)	N
740	chr7	20360155	20360155	rs34786826	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	7p21.1		rs34786826-?	NR	1E-16		0.0268132	[0.021-0.033] unit decrease	Affymetrix [20259828] (imputed)	N
740	chr7	20371781	20371782	rs206199	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	7p21.1	ITGB8	rs206199-G	NR	1E-10		0.0185791	[0.013-0.024] unit increase	Affymetrix [321114] (imputed)	N
740	chr7	20372190	20372191	rs2214440	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	7p21.1	ITGB8	rs2214440-G	NR	5E-11		0.0199829	[0.014-0.026] unit decrease	Affymetrix [321169] (imputed)	N
740	chr7	20376017	20376018	rs10486391	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	7p21.1	NR	rs10486391-?	NR	4E-9				Affymetrix [~ 8270000] (imputed)	N
740	chr7	20376017	20376018	rs10486391	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	7p21.1	ITGB8	rs10486391-A	0.53	7E-9		1.03	[1.02-1.04]	Affymetrix, Illumina [8307659] (imputed)	N
740	chr7	20376102	20376103	rs73086541	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	7p21.1	ITGB8	rs73086541-A	NR	3E-11		0.0210305	[0.015-0.027] unit decrease	Affymetrix [321114] (imputed)	N
740	chr7	20376102	20376103	rs73086541	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma and/or waist-to-hip ratio adjusted for BMI	28,862 European ancestry cases, 422,048 European ancestry controls, 6,780 European ancestry individuals	NA	7p21.1	NR	rs73086541-C	NR	7E-18				Affymetrix [~ 8270000] (imputed)	N
740	chr7	20376770	20376771	rs78620990	31430377	Chung J	2019-08-20	Brain	Genome-wide association study of cerebral small vessel disease reveals established and novel loci.	Non-lobar intracerebral hemorrhage (MTAG)	at least 1,005 European ancestry cases, at least 1,711 European ancestry controls	NA	7p21.1	ITGB8	rs78620990-?	NR	2E-6		1.13	[1.06-1.20]	Affymetrix, Illumina [39235000] (imputed)	N
740	chr7	20378510	20378510	rs766298290	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	7p21.1	ITGB8	rs766298290-T	NR	4E-22		0.0315825	[0.025-0.038] unit decrease	Affymetrix [321114] (imputed)	N
740	chr7	20378510	20378510	rs766298290	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	7p21.1	ITGB8	rs766298290-T	NR	2E-11		0.0238876	[0.017-0.031] unit decrease	Affymetrix [321114] (imputed)	N
740	chr7	20378800	20378801	rs7805218	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	8,021 European ancestry cases, 16,489 European ancestry controls	NA	7p21.1		rs7805218-A	NR	4E-8		0.128538	[0.083-0.174] unit increase	NR [5054572] (imputed)	N
740	chr7	20378800	20378801	rs7805218	34012112	Chiou J	2021-05-19	Nature	Interpreting type 1 diabetes risk with genetics and single-cell epigenomics.	Type 1 diabetes	18,942 European ancestry cases, 501,638 European ancestry controls	NA	7p21.1	ITGB8	rs7805218-A	0.30774	9E-9		0.09541352	[0.063-0.128] unit increase	Affymetrix, Illumina [62116689] (imputed)	N
740	chr7	20381673	20381674	rs3807931	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	7p21.1	NR	rs3807931-?	NR	3E-9		0.03407701	[0.023-0.045] unit increase	Illumina [34656550] (imputed)	N
740	chr7	20381825	20381826	rs3807932	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	7p21.1	ITGB8	rs3807932-C	NR	1E-18		0.0251474	[0.02-0.031] unit increase	Affymetrix [321114] (imputed)	N
740	chr7	20384611	20384612	rs10950802	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	7p21.1	ITGB8	rs10950802-C	NR	7E-9		0.0167662	[0.011-0.022] unit decrease	Affymetrix [321169] (imputed)	N
740	chr7	20384812	20384813	rs10262599	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	7p21.1	NR	rs10262599-?	NR	8E-9				Affymetrix [~ 8270000] (imputed)	N
740	chr7	20391863	20391864	rs3757723	34116867	Tanaka N	2021-06-02	J Allergy Clin Immunol	Eight novel susceptibility loci and putative causal variants in atopic dermatitis.	Atopic dermatitis	2,597 Japanese ancestry cases, 110,504 Japanese ancestry controls	NA	7p21.1		rs3757723-?	NR	2E-8		1.33	[1.2-1.47]	Illumina [9900441] (imputed)	N
740	chr7	20392786	20392787	rs2214442	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in non-smokers	77,113 European ancestry women, 47,319 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	7p21.1	ITGB8	rs2214442-A	0.5223	2E-7		0.0246	[0.015-0.034] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
740	chr7	20392786	20392787	rs2214442	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	7p21.1	ITGB8	rs2214442-A	0.5223	6E-8				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
740	chr7	20392786	20392787	rs2214442	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	7p21.1	ITGB8	rs2214442-A	0.5223	2E-8		0.0234	[0.015-0.032] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
740	chr7	20392786	20392787	rs2214442	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	7p21.1	ITGB8	rs2214442-A	0.5453	7E-6	(EA,women)	0.0252	[0.014-0.036] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
740	chr7	20392786	20392787	rs2214442	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	7p21.1	ITGB8	rs2214442-A	0.5453	4E-9	(EA)	0.0265	[0.018-0.035] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
740	chr7	20394484	20394485	rs10238339	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	7p21.1	NR	rs10238339-?	NR	2E-30				Affymetrix [~ 8270000] (imputed)	N
740	chr7	20396547	20396548	rs12154733	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	7p21.1	ITGB8	rs12154733-C	NR	3E-8		0.0187839	[0.012-0.025] unit decrease	Affymetrix [321016] (imputed)	N
740	chr7	20396547	20396548	rs12154733	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	7p21.1	ITGB8	rs12154733-C	NR	1E-13		0.0256012	[0.019-0.032] unit decrease	Affymetrix [321169] (imputed)	N
740	chr7	20398191	20398192	rs13232403	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	7p21.1	ITGB8	rs13232403-A	NR	3E-9		0.0189308	[0.013-0.025] unit decrease	Affymetrix [319769] (imputed)	N
740	chr7	20398191	20398192	rs13232403	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	7p21.1	ITGB8	rs13232403-A	NR	3E-10		0.0200753	[0.014-0.026] unit decrease	Affymetrix [319769] (imputed)	N
740	chr7	20398191	20398192	rs13232403	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	7p21.1	NR	rs13232403-A	0.269	2E-11		0.0151	[0.011-0.019] unit decrease	NR [~ 27400000] (imputed)	N
740	chr7	20399116	20399117	rs12538581	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	7p21.1	ITGB8	rs12538581-A	NR	4E-8		0.0155059	[0.01-0.0211] unit decrease	Affymetrix [319769] (imputed)	N
740	chr7	20399116	20399117	rs12538581	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	7p21.1	ITGB8	rs12538581-A	NR	9E-10		0.0175566	[0.012-0.023] unit decrease	Affymetrix [321169] (imputed)	N
740	chr7	20402257	20402258	rs17455862	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	7p21.1	NR	rs17455862-?	NR	4E-9				Affymetrix [NR]	N
740	chr7	20405264	20405265	rs3779505	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	7p21.1		rs3779505-?	NR	1E-12				NR [~ 8900000] (imputed)	N
740	chr7	20411896	20411897	rs3757727	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	7p21.1	NR	rs3757727-?	NR	1E-10				Affymetrix [~ 8270000] (imputed)	N
740	chr7	20411896	20411897	rs3757727	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	7p21.1	ITGB8, LOC101927811	rs3757727-T	0.597822	2E-10		1.0401709	[1.03-1.05]	Affymetrix [8274727] (imputed)	N
740	chr7	20411896	20411897	rs3757727	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	7p21.1	ITGB8	rs3757727-C	0.402	3E-14				Affymetrix [15688218] (imputed)	N
740	chr7	20413589	20413590	rs1023522	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	7p21.1	ITGB8	rs1023522-G	NR	2E-10		0.0179585	[0.012-0.023] unit increase	Affymetrix [321016] (imputed)	N
740	chr7	20414110	20414110	rs11452686	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	7p21.1	NR	rs11452686-T	NR	3E-9		1.043	[1.03-1.06]	Affymetrix, Illumina [29235255] (imputed)	N
740	chr7	20414110	20414110	rs11452686	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	7p21.1	ITGB8	rs11452686-T	0.56	8E-9		1.05	[1.03-1.07]	Illumina [20370935] (imputed)	N
740	chr7	20415825	20415826	rs3807945	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7p21.1		rs3807945-?	NR	4E-62				NR [~ 8900000] (imputed)	N
740	chr7	20416243	20416244	rs10215853	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	7p21.1		rs10215853-C	NR	1E-35		0.0162	[0.014-0.019] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
740	chr7	20416243	20416244	rs10215853	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	7p21.1	ITGB8	rs10215853-C	NR	6E-9		0.0179407	[0.012-0.024] unit increase	Affymetrix [321114] (imputed)	N
740	chr7	20416710	20416711	rs12700186	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (adrenergics, inhalants)	28,880 European ancestry cases, 147,565 European ancestry controls, 5,880 East Asian ancestry cases, 172,846 East Asian ancestry controls	NA	7p21.1		rs12700186-C	NR	5E-10		0.0517	[0.035-0.068] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
740	chr7	20416710	20416711	rs12700186	31959851	Olafsdottir TA	2020-01-20	Nat Commun	Eighty-eight variants highlight the role of T cell regulation and airway remodeling in asthma pathogenesis.	Asthma	16,247 European ancestry cases, 346,486 European ancestry controls, 52,942 cases, 355,713 controls	NA	7p21.1	ITGB8, LOC101927811, LOC101927769, MACC1, MACC1-AS1, LOC101927668	rs12700186-T	0.58426	3E-8		1.0361835	[1.02-1.05]	Affymetrix [32463443] (imputed)	N
740	chr7	20418133	20418134	rs2040732	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	7p21.1	ITGB8	rs2040732-C	0.58	7E-9		1.06	[1.04-1.08]	Affymetrix, Illumina [6224355] (imputed)	N
740	chr7	20418189	20418190	rs12700188	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	7p21.1	NR	rs12700188-G	0.41	4E-8		0.91	[0.88-0.94]	Affymetrix [9886854] (imputed)	N
740	chr7	20418189	20418190	rs12700188	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	7p21.1	NR	rs12700188-G	0.41	5E-9			[NR]	Affymetrix [9886854] (imputed)	N
740	chr7	20418189	20418190	rs12700188	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	7p21.1	NR	rs12700188-G	0.41	1E-10		0.92	[0.9-0.95]	Affymetrix [9886854] (imputed)	N
740	chr7	20418189	20418190	rs12700188	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	7p21.1	NR	rs12700188-G	0.41	8E-10			[NR]	Affymetrix [9886854] (imputed)	N
740	chr7	20418189	20418190	rs12700188	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in non-current smokers	16,488 European ancestry cases, 169,688 European ancestry controls	NA	7p21.1	NR	rs12700188-G	0.41	1E-10		0.92	[0.9-0.95]	Affymetrix [9886854] (imputed)	N
740	chr7	20418189	20418190	rs12700188	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in never smokers	8,631 European ancestry cases, 120,544 European ancestry controls	NA	7p21.1	NR	rs12700188-G	0.41	4E-8		0.91	[0.88-0.94]	Affymetrix [9886854] (imputed)	N
740	chr7	20420150	20420151	rs4721902	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex x age interaction (4df test)	up to 43,776 European ancestry men aged <50, up to 50,526 European ancestry women aged <50, up to 69,944 European ancestry men aged >50, up to 88,129 European ancestry women aged >50	NA	7p21.1	MACC1, MACC1-AS1, ABCB5, SP8, RPL23P8	rs4721902-T	0.607172346625404	7E-7				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
740	chr7	20420150	20420151	rs4721902	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	7p21.1	MACC1, MACC1-AS1, ABCB5, SP8, RPL23P8	rs4721902-T	0.607172346625404	3E-8		0.021385951	units decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
740	chr7	20420991	20420992	rs6944180	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	7p21.1	ITGB8	rs6944180-G	NR	5E-11		0.0187208	[0.013-0.024] unit decrease	Affymetrix [321016] (imputed)	N
740	chr7	20423923	20423923	rs149317277	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	7p21.1	ITGB8	rs149317277-GTCTGAACCAAGAT	NR	5E-9		0.0170854	[0.011-0.023] unit decrease	Affymetrix [319769] (imputed)	N
740	chr7	20423923	20423923	rs149317277	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	7p21.1	ITGB8	rs149317277-GTCTGAACCAAGAT	NR	6E-10		0.0180606	[0.012-0.024] unit decrease	Affymetrix [319769] (imputed)	N
740	chr7	20423923	20423923	rs149317277	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	7p21.1	ITGB8	rs149317277-GTCTGAACCAAGAT	NR	4E-12		0.0203931	[0.015-0.026] unit decrease	Affymetrix [321169] (imputed)	N
740	chr7	20423923	20423923	rs149317277	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	7p21.1	ITGB8	rs149317277-?	NR	8E-17		1.064	[1.05-1.08]	Affymetrix [9000000] (imputed)	N
740	chr7	20423923	20423923	rs149317277	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	7p21.1	ITGB8	rs149317277-G	NR	1E-12		1.051	[1.04-1.06]	Affymetrix [9000000] (imputed)	N
740	chr7	20426262	20426263	rs4473914	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (childhood onset)	9,433 British ancestry cases, 318,237 British ancestry controls	NA	7p21.1	ITGB6, MACC1, ABCB5	rs4473914-T	0.604	9E-9		1.092	[1.060-1.125]	Affymetrix [10894596] (imputed)	N
740	chr7	20429674	20429675	rs79180837	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic rhinitis	18,915 European ancestry cases, 239,773 European ancestry controls	NA	7p21.1	ABCB5, ITGB8	rs79180837-A	0.0268	7E-9		1.209	[1.137-1.286]	Affymetrix [15688218] (imputed)	N
740	chr7	20431584	20431585	rs10231365	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	7p21.1	ITGB8	rs10231365-T	0.511	2E-8		0.0226	[0.015-0.03] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
740	chr7	20431584	20431585	rs10231365	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	7p21.1	ITGB8	rs10231365-T	0.5025	9E-9	(EA)	0.024	[0.016-0.032] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
740	chr7	20431584	20431585	rs10231365	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	7p21.1	ITGB8	rs10231365-T	0.511	7E-7		0.0226	[0.014-0.032] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
740	chr7	20431584	20431585	rs10231365	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	7p21.1	ITGB8	rs10231365-T	0.5025	7E-7	(EA)	0.0233	[0.014-0.033] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
740	chr7	20431584	20431585	rs10231365	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	7p21.1	ITGB8	rs10231365-?	0.511	4E-8				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
740	chr7	20431584	20431585	rs10231365	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	7p21.1	ITGB8	rs10231365-?	0.5025	2E-8	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
740	chr7	20438973	20438974	rs17365498	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	7p21.1		rs17365498-?	NR	9E-9				NR [~ 8900000] (imputed)	N
740	chr7	20439551	20439552	rs34436326	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	7p21.1		rs34436326-A	0.35	9E-11		6.49	z score increase	Affymetrix [9061022] (imputed)	N
740	chr7	20439551	20439552	rs34436326	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	7p21.1		rs34436326-A	0.35	4E-8		5.49	z score increase	Affymetrix [9061022] (imputed)	N
740	chr7	20441064	20441065	rs13242474	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	7p21.1	ITGB8	rs13242474-G	NR	3E-8		0.0178551	[0.012-0.024] unit decrease	Affymetrix [319769] (imputed)	N
740	chr7	20442462	20442463	rs752474	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	7p21.1	ITGB8	rs752474-C	0.470656	9E-10		0.013657498	[0.0093-0.018] unit decrease	Affymetrix [93095623] (imputed)	N
740	chr7	20442795	20442796	rs3823974	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	7p21.1	ITGB8	rs3823974-C	NR	2E-22		0.0282005	[0.023-0.034] unit decrease	Affymetrix [321114] (imputed)	N
740	chr7	20442795	20442796	rs3823974	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	7p21.1	ITGB8	rs3823974-C	0.406734	3E-21	(females)	0.0279	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
740	chr7	20442795	20442796	rs3823974	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	7p21.1	ITGB8	rs3823974-C	0.406734	2E-14		0.01764	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
740	chr7	20442795	20442796	rs3823974	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	7p21.1	ITGB8	rs3823974-C	0.406734	6E-16	(females)	0.02372	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
740	chr7	20442795	20442796	rs3823974	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	7p21.1	ITGB8	rs3823974-C	0.406734	3E-11		0.01509	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
740	chr7	20443720	20443721	rs6972297	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	7p21.1	NR	rs6972297-?	NR	7E-12				Affymetrix [~ 8270000] (imputed)	N
740	chr7	20443959	20443960	rs17142799	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	7p21.1	NR	rs17142799-T	0.02657	6E-12		1.132	[1.094-1.171]	Affymetrix [15688218] (imputed)	N
740	chr7	20444059	20444060	rs6955431	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	7p21.1		rs6955431-?	NR	3E-12				NR [~ 8900000] (imputed)	N
740	chr7	20444973	20444974	rs10807803	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	7p21.1	ITGB8	rs10807803-G	NR	1E-18		0.0256642	[0.02-0.031] unit decrease	Affymetrix [321114] (imputed)	N
741	chr7	20452727	20452728	rs4141320	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	7p21.1	ITGB8	rs4141320-G	NR	3E-10		0.0201154	[0.014-0.026] unit decrease	Affymetrix [321114] (imputed)	N
741	chr7	20453787	20453788	rs4719612	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	7p21.1	ITGB8	rs4719612-T	NR	4E-12		0.0204401	[0.015-0.026] unit decrease	Affymetrix [321016] (imputed)	N
741	chr7	20455977	20455978	rs2390314	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	7p21.1	ITGB8	rs2390314-T	0.9295097	4E-10		0.027131159	[0.019-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
741	chr7	20455977	20455978	rs2390314	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	7p21.1	NR	rs2390314-?	NR	7E-9				Affymetrix [~ 8270000] (imputed)	N
741	chr7	20455977	20455978	rs2390314	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	7p21.1	NR	rs2390314-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
741	chr7	20455977	20455978	rs2390314	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	7p21.1	ITGB8	rs2390314-A	0.070343	3E-9		1.0742718	[1.05-1.1]	Affymetrix [8274727] (imputed)	N
741	chr7	20455977	20455978	rs2390314	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	7p21.1	NR	rs2390314-A	0.06907	8E-15		1.094	[1.071-1.118]	Affymetrix [15688218] (imputed)	N
741	chr7	20455977	20455978	rs2390314	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (adrenergics, inhalants)	28,880 European ancestry cases, 147,565 European ancestry controls	NA	7p21.1	ITGB8	rs2390314-A	0.0691443	3E-10		0.11217269	[0.077-0.147] unit increase	Affymetrix [7288503] (imputed)	N
741	chr7	20455977	20455978	rs2390314	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Respiratory diseases	approximately 459,000 European ancestry individuals	NA	7p21.1		rs2390314-?	NR	1E-11				NR [~ 8900000] (imputed)	N
741	chr7	20455977	20455978	rs2390314	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	7p21.1		rs2390314-?	NR	2E-17				NR [~ 8900000] (imputed)	N
741	chr7	20461575	20461576	rs34295201	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	7p21.1	ITGB8	rs34295201-T	NR	5E-15		0.0250835	[0.019-0.031] unit decrease	Affymetrix [321114] (imputed)	N
741	chr7	20462861	20462862	rs73090415	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	7p21.1	ITGB8	rs73090415-C	NR	2E-12		0.0241956	[0.017-0.031] unit decrease	Affymetrix [321016] (imputed)	N
741	chr7	20462861	20462862	rs73090415	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	7p21.1	ITGB8	rs73090415-C	NR	2E-8		0.0195226	[0.013-0.026] unit decrease	Affymetrix [321169] (imputed)	N
741	chr7	20466698	20466699	rs4719615	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	7p21.1	ITGB8	rs4719615-C	NR	1E-10		0.0184875	[0.013-0.024] unit decrease	Affymetrix [321114] (imputed)	N
741	chr7	20480170	20480171	rs10262951	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	7p21.1	ITGB8	rs10262951-G	NR	2E-9		0.0169947	[0.011-0.023] unit decrease	Affymetrix [321114] (imputed)	N
741	chr7	20502668	20502669	rs10270615	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	7p21.1	intergenic	rs10270615-C	0.2464	8E-42		0.05641749	[0.048-0.065] unit decrease	Affymetrix [~ 2500000] (imputed)	N
741	chr7	20502827	20502828	rs57834782	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	7p21.1		rs57834782-A	0.245078	1E-104		0.055638865	[0.051-0.061] unit decrease	Affymetrix [93095623] (imputed)	N
741	chr7	20502827	20502828	rs57834782	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	7p21.1		rs57834782-A	0.245081	4E-114		0.058400963	[0.053-0.063] unit decrease	Affymetrix [93095623] (imputed)	N
741	chr7	20502827	20502828	rs57834782	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	7p21.1		rs57834782-?	NR	3E-115				NR [~ 8900000] (imputed)	N
741	chr7	20503006	20503007	rs61210140	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	7p21.1	NR	rs61210140-A	0.245278	7E-141		0.05833	[0.054-0.063] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
741	chr7	20506346	20506347	rs11971231	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	7p21.1		rs11971231-C	0.754	6E-52				Affymetrix [10369434] (imputed)	N
741	chr7	20506390	20506391	rs12700203	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p21.1	NR	rs12700203-G	0.246071	8E-169				Affymetrix, Illumina [19872809] (imputed)	N
741	chr7	20508611	20508612	rs34030463	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	7p21.1		rs34030463-A	NR	8E-92		0.0387	[0.035-0.042] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
741	chr7	20509852	20509853	rs11978564	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	93,063 East Asian ancestry individuals	NA	7p21.1		rs11978564-C	0.246685	8E-23		0.051057	[0.041-0.061] unit decrease	Illumina [13470073] (imputed)	N
741	chr7	20523928	20523929	rs6958595	29698431	Roosenboom J	2018-04-26	PLoS One	Mapping genetic variants for cranial vault shape in humans.	Cephalic index	4,419 European ancestry individuals	NA	7p21.1	NR	rs6958595-A	0.3635	3E-6		0.3218	[0.12-0.53] unit increase	Illumina [at least 567677] (imputed)	N
741	chr7	20534388	20534389	rs2023792	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	86,890 East Asian ancestry individuals	NA	7p21.1	NR	rs2023792-C	0.765466	2E-32		0.067386	[0.056-0.079] SD units increase	Affymetrix, Illumina [16279099] (imputed)	N
741	chr7	20536341	20536342	rs9986779	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Asthma	13,015 East Asian ancestry cases, 162,933 East Asian ancestry controls	NA	7p21.1		rs9986779-G	0.238665779	1E-9		0.09751943	[0.066-0.129] unit decrease	Illumina [13429513] (imputed)	N
741	chr7	20541864	20541865	rs10265538	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	7p21.1	intergenic	rs10265538-C	0.2465	9E-52		0.06287406	[0.055-0.071] unit decrease	Affymetrix [~ 2500000] (imputed)	N
741	chr7	20544208	20544209	rs12531500	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma onset (childhood vs adult)	13,962 European ancestry childhood onset cases, 14,873 European ancestry adult onset cases	31,002 European ancestry childhood onset cases, 16,297 European ancestry adult onset cases	7p21.1	ITGB8, ABCB5	rs12531500-A	0.565	7E-8		1.056	[1.04-1.08]	Affymetrix [9000000] (imputed)	N
741	chr7	20544208	20544209	rs12531500	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	7p21.1	ITGB8, ABCB5	rs12531500-?	NR	7E-22		1.073	[1.06-1.09]	Affymetrix [9000000] (imputed)	N
741	chr7	20544208	20544209	rs12531500	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	7p21.1	ITGB8, ABCB5	rs12531500-A	NR	2E-15		1.056	[1.04-1.07]	Affymetrix [9000000] (imputed)	N
741	chr7	20544738	20544739	rs9986877	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Eosinophil counts	62,076 Japanese ancestry individuals	NA	7p21.1	ITGB8, ABCB5	rs9986877-?	NR	3E-18		0.05875	[0.046-0.072] unit decrease novel	Illumina [6108953] (imputed)	N
741	chr7	20545829	20545830	rs10260049	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	7p21.1	NR	rs10260049-?	NR	3E-11				Affymetrix [~ 8270000] (imputed)	N
741	chr7	20560995	20560996	rs6461503	34116867	Tanaka N	2021-06-02	J Allergy Clin Immunol	Eight novel susceptibility loci and putative causal variants in atopic dermatitis.	Atopic dermatitis	2,597 Japanese ancestry cases, 110,504 Japanese ancestry controls, 25,685 European ancestry cases, 76,768 European ancestry controls	NA	7p21.1		rs6461503-?	NR	2E-8		0.95	[0.93-0.96]	Illumina [5170515] (imputed)	N
741	chr7	20560995	20560996	rs6461503	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (childhood onset)	9,433 British ancestry cases, 318,237 British ancestry controls	NA	7p21.1	NR	rs6461503-?	NR	9E-8				Affymetrix [10894596] (imputed)	N
741	chr7	20560995	20560996	rs6461503	29785011	Zhu Z	2018-05-21	Nat Genet	A genome-wide cross-trait analysis from UK Biobank highlights the shared genetic architecture of asthma and allergic diseases.	Asthma or allergic disease (pleiotropy)	14,085 European asthma cases, 25,685 European ancestry allergic diseases cases, 76,768 European ancestry controls	NA	7p21.1	ITGB8	rs6461503-?	NR	3E-10		1.05		NR [74888535] (imputed)	N
741	chr7	20560995	20560996	rs6461503	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	7p21.1	ITGB8, ABCB5	rs6461503-T	0.53	2E-14		1.039	[1.03-1.05]	Affymetrix, Illumina [8307659] (imputed)	N
741	chr7	20570070	20570071	rs7802450	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	7p21.1	ABCB5	rs7802450-T	0.576635	5E-21		1.058682	[1.04617161876384-1.07134183604679]	NR [9572556] (imputed)	N
741	chr7	20575750	20575751	rs10244416	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	7p21.1	ABCB5	rs10244416-C	0.49	7E-24				NR [> 9500000] (imputed)	N
741	chr7	20575750	20575751	rs10244416	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	7p21.1	NR	rs10244416-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
741	chr7	20575750	20575751	rs10244416	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	7p21.1	NR	rs10244416-?	NR	1E-13				Affymetrix [~ 8270000] (imputed)	N
741	chr7	20575750	20575751	rs10244416	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	7p21.1	NR	rs10244416-C	0.4879	1E-18		1.054	[1.042-1.065]	Affymetrix [15688218] (imputed)	N
741	chr7	20575750	20575751	rs10244416	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic disease (asthma, hay fever or eczema)	106,772 European ancestry cases, 239,773 European ancestry controls	83,335 cases, 34,934 controls	7p21.1	NR	rs10244416-C	0.4879	2E-20		1.052	[1.041-1.063]	Affymetrix [15688218] (imputed)	N
741	chr7	20575750	20575751	rs10244416	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	7p21.1		rs10244416-?	NR	3E-21				NR [~ 8900000] (imputed)	N
741	chr7	20577297	20577298	rs149169037	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	7p21.1	ITGB8	rs149169037-G	0.895	3E-8		1.14	1.10-1.19	Illumina [9725440] (imputed)	N
741	chr7	20577451	20577452	rs13247119	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	7p21.1	intergenic	rs13247119-T	0.2453	3E-39		0.05485191	[0.047-0.063] unit increase	Affymetrix [~ 2500000] (imputed)	N
742	chr7	20579646	20579647	rs28423374	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma and/or BMI	28,862 European ancestry cases, 422,048 European ancestry controls, 6,912 European ancestry individuals	NA	7p21.1	NR	rs28423374-T	NR	2E-11				Affymetrix [~ 8270000] (imputed)	N
742	chr7	20579646	20579647	rs28423374	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	7p21.1	NR	rs28423374-T	NR	4E-7				Affymetrix [~ 8270000] (imputed)	N
742	chr7	20581948	20581949	rs4335039	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (glucocorticoids)	17,352 European ancestry cases, 188,348 European ancestry controls, 13,102 East Asian ancestry cases, 165,624 East Asian ancestry controls	NA	7p21.1		rs4335039-A	NR	4E-9		0.0527	[0.035-0.07] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
742	chr7	20583155	20583158	rs34025520	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	7p21.1	intergenic	rs34025520-A	0.2378	2E-46		0.06014058	[0.052-0.068] unit decrease	Affymetrix [~ 2500000] (imputed)	N
742	chr7	20583155	20583158	rs34025520	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	7p21.1	intergenic	rs34025520-A	0.2378	5E-54		0.06515318	[0.057-0.073] unit decrease	Affymetrix [~ 2500000] (imputed)	N
742	chr7	20584558	20584559	rs12700215	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Asthma	38,369 European ancestry cases, 411,131 European ancestry controls, 13,015 East Asian ancestry cases, 162,933 East Asian ancestry controls	NA	7p21.1		rs12700215-A	NR	1E-10		0.0477	[0.033-0.062] unit decrease	Affymetrix, Illumina [25837673] (imputed)	N
742	chr7	20584836	20584837	rs13241235	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	7p21.1	NR	rs13241235-?	NR	3E-14	(conditional)			Affymetrix [15688218] (imputed)	N
742	chr7	20586178	20586179	rs2188862	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	7p21.1	ITGB8	rs2188862-?	NR	7E-6	(oxalate)	0.28209245	[0.16-0.4] unit decrease	Affymetrix [at least 2500000] (imputed)	N
742	chr7	20586842	20586843	rs35621564	34103634	Valette K	2021-06-08	Commun Biol	Prioritization of candidate causal genes for asthma in susceptibility loci derived from UK Biobank.	Asthma	56,167 White-British ancestry cases, 352,255 White-British ancestry controls	NA	7p21.1	ITGB8, ABCB5	rs35621564-G	0.365249288965911	7E-11		0.044390935	[0.031-0.058] unit decrease	Affymetrix [35186738] (imputed)	N
742	chr7	20586842	20586843	rs35621564	31959851	Olafsdottir TA	2020-01-20	Nat Commun	Eighty-eight variants highlight the role of T cell regulation and airway remodeling in asthma pathogenesis.	Asthma	16,247 European ancestry cases, 346,486 European ancestry controls, 52,942 cases, 355,713 controls	NA	7p21.1	ABCB5, ITGB8, LOC101927811, SP8, LOC101927769, RPL23P8	rs35621564-A	0.63477	2E-13		1.0496705	[1.03-1.06]	Affymetrix [32463443] (imputed)	N
742	chr7	20586842	20586843	rs35621564	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	7p21.1	NR	rs35621564-?	NR	7E-10				Affymetrix [~ 8270000] (imputed)	N
742	chr7	20586842	20586843	rs35621564	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	7p21.1	Intergenic	rs35621564-A	0.634874	1E-13		1.0498576	[1.04-1.06]	Affymetrix [8274727] (imputed)	N
742	chr7	20586842	20586843	rs35621564	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Respiratory diseases	approximately 459,000 European ancestry individuals	NA	7p21.1		rs35621564-?	NR	2E-10				NR [~ 8900000] (imputed)	N
742	chr7	20588186	20588187	rs13308728	33602968	Skuladottir AT	2021-02-18	Sci Rep	A meta-analysis uncovers the first sequence variant conferring risk of Bell's palsy.	Bell's palsy	4,714 European ancestry cases, 1,011,520 European ancestry controls	NA	7p21.1	intergenic	rs13308728-G	0.3313	5E-7		0.89244	NR	Affymetrix, Illumina [30341632] (imputed)	N
742	chr7	20596928	20596929	rs17143056	34127860	Robertson CC	2021-06-14	Nat Genet	Fine-mapping, trans-ancestral and genomic analyses identify causal variants, cells, genes and drug targets for type 1 diabetes.	Type 1 diabetes	20,065 European ancestry cases, 33,065 European ancestry controls, 1,045 other-admixed ancestry cases, 1,103 other-admixed ancestry controls, 1,043 African ancestry cases, 3,206 African ancestry controls	NA	7p21.1	ABCB5	rs17143056-G	0.183	2E-8		0.909		Illumina [715631] (imputed)	N
742	chr7	20596928	20596929	rs17143056	34127860	Robertson CC	2021-06-14	Nat Genet	Fine-mapping, trans-ancestral and genomic analyses identify causal variants, cells, genes and drug targets for type 1 diabetes.	Type 1 diabetes	20,065 European ancestry cases, 33,065 European ancestry controls, 1,045 other-admixed ancestry cases, 1,103 other-admixed ancestry controls, 1,043 African ancestry cases, 3,206 African ancestry controls	NA	7p21.1	ABCB5	rs17143056-G	0.183	2E-8		0.909		Illumina [715631] (imputed)	N
742	chr7	20632871	20632872	rs55756407	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	7p21.1		rs55756407-?	NR	3E-9				NR [~ 8900000] (imputed)	N
742	chr7	20633735	20633736	rs10950819	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	7p21.1	NR	rs10950819-?	NR	4E-9				Affymetrix [~ 8270000] (imputed)	N
742	chr7	20638230	20638231	rs10488581	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	7p21.1	NR	rs10488581-?	NR	5E-9				Affymetrix [~ 8270000] (imputed)	N
742	chr7	20645324	20645325	rs191916038	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	7p21.1	NR	rs191916038-A	0.146289	2E-8		0.0539892	[0.035-0.073] unit increase	Affymetrix [17914406] (imputed)	N
742	chr7	20647014	20647015	rs10950821	20339536	Barber MJ	2010-03-22	PLoS One	Genome-wide association of lipid-lowering response to statins in combined study populations.	Response to statin therapy	3,928 European ancestry individuals	NA	7p21.1	SP8, ABCB5, LOC402642	rs10950821-G	0.26	7E-6	(chol, sum)			Illumina [~ 2500000] (imputed)	N
742	chr7	20668883	20668884	rs76522145	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	7p21.1	ABCB5	rs76522145-G	NR	4E-8		0.0237121	[0.015-0.032] unit decrease	Affymetrix [321114] (imputed)	N
742	chr7	20681849	20681850	rs73276602	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	7p21.1	ABCB5	rs73276602-?	NR	1E-7				Affymetrix [5486770] (imputed)	N
742	chr7	20697038	20697039	rs34125782	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels	774 Chinese ancestry individuals	NA	7p21.1		rs34125782-?	NR	7E-7		0.28	[0.17-0.39] unit increase	Affymetrix [NR] (imputed)	N
742	chr7	20697993	20697994	rs76913103	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	7p21.1	NR	rs76913103-?	NR	7E-11				Affymetrix [~ 8270000] (imputed)	N
743	chr7	20716208	20716209	rs10236314	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7p21.1		rs10236314-?	NR	3E-13				NR [~ 8900000] (imputed)	N
743	chr7	20728568	20728569	rs185077097	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		ABCB5	rs185077097-?	NR	2E-8		1.09147	[NR] unit decrease	Affymetrix [NR] (imputed)	N
743	chr7	20743746	20743747	rs145207197	28084903	Hallberg P	2017-01-13	Pharmacogenomics	Genetic variants associated with angiotensin-converting enzyme inhibitor-induced cough: a genome-wide association study in a Swedish population.	Cough in response to angiotensin-converting enzyme inhibitor drugs	123 European ancestry cases, 1,345 European and unknown ancestry controls, 1 Middle Eastern ancestry case	NR	7p21.1	ABCB5	rs145207197-?	NR	4E-6		5.54	[2.67-11.5]	Illumina [8600000] (imputed)	N
743	chr7	20791997	20791998	rs2108258	23259602	Wang X	2012-12-21	BMC Oral Health	Genome-wide association scan of dental caries in the permanent dentition.	Dental caries	1,483 European ancestry comparatively younger individuals, 5,960 European ancestry comparatively older individuals	NA	7p21.1	ABCB5	rs2108258-?	NR	2E-6	(Comparatively Older)			Affymetrix, Illumina [~ 1400000] (imputed)	N
743	chr7	20824613	20824614	rs34908430	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Problematic alcohol use (MTAG)	972,915 European ancestry individuals	NA	7p21.1	NR	rs34908430-T	0.2986	2E-9		0.013548642	[0.0091-0.018] unit decrease	Affymetrix [10613246] (imputed)	N
743	chr7	20824613	20824614	rs34908430	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol consumption (drinks per week) (MTAG)	972,915 European ancestry individuals	NA	7p21.1	NR	rs34908430-T	0.299	2E-8		0.010560681	[0.0069-0.0143] unit decrease	Affymetrix [NR] (imputed)	N
743	chr7	20824613	20824614	rs34908430	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Alcohol consumption (drinks per week)	414,343 European ancestry individuals	NA	7p21.1	SP8	rs34908430-T	0.2995	2E-8		0.013633174	[0.0089-0.0184] unit decrease	Affymetrix [11514936] (imputed)	N
743	chr7	20826451	20826452	rs34863300	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	7p21.1	NR	rs34863300-G	0.31	5E-9		0.00690093	[0.0046-0.0092] unit decrease	NR [9732723] (imputed)	N
744	chr7	20862301	20862302	rs2709736	20386566	Lee MT	2010-04-13	Mol Psychiatry	Genome-wide association study of bipolar I disorder in the Han Chinese population.	Bipolar I disorder	1,000 Han Chinese ancestry cases, 1,000 Han Chinese ancestry controls	409 Han Chinese ancestry cases, 1,000 Han Chinese ancestry controls	7p21.1	SP8	rs2709736-G	NR	5E-7		1.44	[1.25-1.66]	Illumina [516919]	N
744	chr7	20865555	20865556	rs62439287	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Prostate cancer	7,438 White British ancestry cases, 118,206 White British ancestry controls	NA	7p21.1		rs62439287-?	NR	6E-6		1.09891	[1.06-1.14]	NR [680312]	N
744	chr7	20865978	20865979	rs12700239	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	7p21.1		rs12700239-A	0.2	1E-11		6.8	z score increase	Affymetrix [9061022] (imputed)	N
744	chr7	20865978	20865979	rs12700239	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	7p21.1		rs12700239-A	0.2	1E-10		6.44	z score increase	Affymetrix [9061022] (imputed)	N
744	chr7	20865978	20865979	rs12700239	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	7p21.1	NR	rs12700239-A	0.2088	3E-10				NR [9056863] (imputed)	N
744	chr7	20865978	20865979	rs12700239	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fish- and plant-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	7p21.1	intergenic	rs12700239-?	NR	1E-8		0.0170831	[0.011-0.023] unit increase	Affymetrix [25921788] (imputed)	N
744	chr7	20885094	20885095	rs13245023	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	7p21.1	NR	rs13245023-C	0.964100804151624	9E-6	(IGP77)	0.4218	[0.24-0.61] unit decrease	Illumina [~ 2500000] (imputed)	N
744	chr7	20890866	20890867	rs60227577	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	7p21.1	Intergenic	rs60227577-A	0.9652	4E-8	(MTAG)	0.0205	[0.013-0.028] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
744	chr7	20907651	20907652	rs183870953	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Hepatitis A	2,442 European ancestry cases, 217,137 European ancestry controls	NA	7p21.1	NR	rs183870953-?	NR	1E-6		2.8544	[0.99-4.72] unit increase	Illumina [at least 560000] (imputed)	N
744	chr7	20911426	20911427	rs204595	27529621	Otowa T	2016-08-16	PLoS One	The First Pilot Genome-Wide Gene-Environment Study of Depression in the Japanese Population.	Depressive symptoms (stressful life events interaction)	320 Japanese ancestry individuals	439 Japanese ancestry individuals	7p21.1	Intergenic	rs204595-C	0.131	4E-6		0.104	[0.061-0.147] unit increase	Affymetrix [534848]	N
744	chr7	20926005	20926006	rs2709729	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Prostate cancer	11,599 European ancestry cases, 199,628 European ancestry controls, 5,672 East Asian ancestry cases, 84,660 East Asian ancestry controls	NA	7p21.1		rs2709729-T	NR	1E-12		0.0866	[0.063-0.111] unit decrease	Affymetrix, Illumina [25775424] (imputed)	N
744	chr7	20948396	20948397	rs73089398	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic obstructive pulmonary disease	13,530 European ancestry cases, 454,945 European ancestry controls, 4,017 East Asian ancestry cases, 162,653 East Asian ancestry controls	NA	7p15.3		rs73089398-T	NR	3E-9		0.1817	[0.12-0.24] unit increase	Affymetrix, Illumina [25843162] (imputed)	N
745	chr7	20994490	20994491	rs12155172	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	7p15.3	NR	rs12155172-A	0.22	9E-23		1.1	[1.08-1.12]	Illumina [20370935] (imputed)	N
745	chr7	20994490	20994491	rs12155172	23535732	Eeles RA	2013-04-01	Nat Genet	Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array.	Prostate cancer	11,085 European ancestry cases, 11,463 European ancestry controls	19,662 European ancestry cases, 19,715 European ancestry controls	7p15.3	SP8, ABCB5, RPL23P8	rs12155172-A	0.23	5E-13		1.11	[1.07-1.15]	Illumina [~ 2600000] (imputed)	N
745	chr7	20994490	20994491	rs12155172	19767753	Eeles RA	2009-09-20	Nat Genet	Identification of seven new prostate cancer susceptibility loci through a genome-wide association study.	Prostate cancer	1,854 European ancestry cases, 1,894 European ancestry controls	19,879 cases and 18,761 controls of European, East Asian, African American, Latino, and Hawaiian ancestry	7p15.3	NR	rs12155172-?	0.20	9E-6		1.05	[1.00-1.10]	Illumina [541129]	N
745	chr7	20995777	20995778	rs151194174	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Stem cell growth factor beta levels	3,682 Finnish ancestry individuals	NA	7p15.3	NR	rs151194174-G		1E-6		0.4635	[0.28-0.65] SD units decrease	NR [10700000] (imputed)	N
745	chr7	20999210	20999211	rs9655205	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	7p15.3	NR	rs9655205-C	NR	6E-28		1.091	[1.07-1.11]	Affymetrix, Illumina [29235255] (imputed)	N
745	chr7	21012143	21012144	rs6944344	33290408	Ray D	2020-12-08	PLoS Genet	A powerful method for pleiotropic analysis under composite null hypothesis identifies novel shared loci between Type 2 Diabetes and Prostate Cancer.	Type 2 diabetes or prostate cancer (pleiotropy)	62,892 European ancestry T2D cases, 79,194 European ancestry PrCa cases, 659,536 European ancestry controls	NA	7p15.3	LINC01162	rs6944344-?		4E-8				Illumina [5041948] (imputed)	N
745	chr7	21014992	21014993	rs185158884	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	7p15.3	Intergenic	rs185158884-G	1.0	6E-7	(AA)	12.238	NR unit increase	Illumina [NR] (imputed)	N
745	chr7	21028613	21028614	rs73269804	31324189	Kim W	2019-07-19	Respir Res	DSP variants may be associated with longitudinal change in quantitative emphysema.	Emphysema annual change measurement in smokers (percent low attenuation area)	4,427 European ancestry individuals, 1,158 African American individuals	NA	7p15.3	SP8	rs73269804-A	NR	1E-6		0.142	[0.085-0.199] unit increase	Illumina [NR] (imputed)	N
745	chr7	21082903	21082904	rs6461532	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	7p15.3		rs6461532-G	0.48	5E-14		7.53	z score increase	Affymetrix [9061022] (imputed)	N
745	chr7	21082903	21082904	rs6461532	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	7p15.3	Intergenic	rs6461532-C	0.5173	3E-8	(MTAG)	0.0127	[0.0082-0.0172] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
745	chr7	21094927	21094928	rs917813	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	7p15.3	Intergenic	rs917813-A	0.7056	6E-9	(MTAG)	0.0114	[0.0075-0.0153] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
745	chr7	21094927	21094928	rs917813	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	7p15.3	Intergenic	rs917813-G	0.2944	3E-9		0.0126	[0.0085-0.0167] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
746	chr7	21131806	21131807	rs6461536	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	7p15.3	Intergenic	rs6461536-A	0.7043	8E-11	(MTAG)	0.0117	[0.0082-0.0152] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
746	chr7	21131806	21131807	rs6461536	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	7p15.3		rs6461536-A	0.7118	1E-8		0.0088	[0.0059-0.0117] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
746	chr7	21131806	21131807	rs6461536	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	7p15.3	Intergenic	rs6461536-A	0.7118	2E-10	(MTAG)	0.0092	[0.0065-0.0119] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
746	chr7	21140801	21140802	rs117714999	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7p15.3	NR	rs117714999-G	0.01394	6E-11	(GSN)	0.05216	NR unit increase	Illumina [1671387] (imputed)	N
746	chr7	21140801	21140802	rs117714999	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7p15.3	NR	rs117714999-G	0.01394	1E-8	(LDHB)	0.14	NR unit increase	Illumina [1671387] (imputed)	N
746	chr7	21147677	21147678	rs11974269	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	7p15.3	ASS1P11	rs11974269-C	0.128	8E-8	(Urinary creatinine )	0.05	[NR] mmol/d increase	Illumina [899892]	N
746	chr7	21147677	21147678	rs11974269	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	7p15.3	ASS1P11	rs11974269-C	0.128	5E-6	(Urinary free dopamine )	0.04	[NR] nmol/d increase	Illumina [899892]	N
746	chr7	21163354	21163355	rs10950840	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	7p15.3	ASS1P11	rs10950840-G	0.213	7E-6	(Urinary free epinephrine )	0.04	[NR] nmol/d increase	Illumina [899892]	N
746	chr7	21166344	21166345	rs7782230	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	7p15.3	NA	rs7782230-T		1E-9		0.0117169	[0.008-0.0155] unit decrease	Illumina [13288253] (imputed)	N
746	chr7	21193340	21193341	rs2110007	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal adenoma (advanced)	636 Austrian ancestry cases, 855 Austrian ancestry controls	NA	7p15.3	Intergenic	rs2110007-?		9E-6		2.037905	[NR]	Affymetrix [492217] (imputed)	N
746	chr7	21193340	21193341	rs2110007	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal adenoma (advanced)	636 Austrian ancestry cases, 4,294 European ancestry controls	NA	7p15.3	Intergenic	rs2110007-?		3E-6		1.9704434	[NR]	Affymetrix [492217] (imputed)	N
746	chr7	21222789	21222790	rs6971109	22864933	O'Donnell PH	2012-01-03	Cancer	Identification of novel germline polymorphisms governing capecitabine sensitivity.	Capecitabine sensitivity	Up to 84 East Asian ancestry lymphoblastoid cell lines, up to 164 European ancestry lymphoblastoid cell lines, up to 173 African ancestry lymphoblastoid cell lines, up to 82 African American lymphoblastoid cell lines	NA	7p15.3	intergenic	rs6971109-?	NR	7E-6				NR [~ 2000000]	N
748	chr7	21372929	21372930	rs2700297	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	7p15.3		rs2700297-?	NR	1E-8				NR [~ 8900000] (imputed)	N
748	chr7	21397470	21397471	rs6954446	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	7p15.3		rs6954446-G	NR	9E-9		0.0127	[0.0084-0.017] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
748	chr7	21397470	21397471	rs6954446	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	7p15.3	NR	rs6954446-G	0.312695	1E-9		0.014719436	[0.01-0.0195] unit increase	Affymetrix [93095623] (imputed)	N
748	chr7	21397470	21397471	rs6954446	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	7p15.3		rs6954446-G	0.312726	1E-13		0.017859353	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
748	chr7	21397470	21397471	rs6954446	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	7p15.3		rs6954446-G	0.312604	4E-13		0.01750969	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
748	chr7	21397470	21397471	rs6954446	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	7p15.3	NR	rs6954446-G	0.312437	6E-11		0.012863	[0.009-0.0167] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
748	chr7	21399326	21399327	rs73271865	28081371	Sanders AE	2017-01-12	J Dent Res	GWAS Identifies New Loci for Painful Temporomandibular Disorder: Hispanic Community Health Study/Study of Latinos.	Temporomandibular joint disorder	769 Hispanic cases, 9,384 Hispanic controls	768 European ancestry cases, 4,845 European ancestry controls, 144 Hispanic/Latin American cases, 492 Hispanic/Latin American controls, 999 cases, 2,031 controls	7p15.3	SP4	rs73271865-T	0.041000000000000036	3E-7	(Hispanic)	1.7889087		Illumina [2100000] (imputed)	N
748	chr7	21400524	21400525	rs35929923	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	7p15.3		rs35929923-G	0.744	2E-8		0.008	[0.006-0.01] unit decrease	NR [NR] (imputed)	N
748	chr7	21400524	21400525	rs35929923	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	7p15.3		rs35929923-A	0.2495	2E-12		0.0114	[0.0083-0.0145] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
748	chr7	21400524	21400525	rs35929923	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	7p15.3	Intergenic	rs35929923-A	0.2495	3E-14	(MTAG)	0.0115	[0.0086-0.0144] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
748	chr7	21400825	21400825	rs56066200	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	7p15.3	SP4	rs56066200-T	0.733139	5E-12		0.0162961	[0.012-0.021] unit increase	NR [16516521] (imputed)	N
748	chr7	21404942	21404943	rs11514744	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	7p15.3		rs11514744-T	0.252967	5E-9		0.0143473	[0.0097-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
748	chr7	21407385	21407386	rs6953395	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	7p15.3	Intergenic	rs6953395-A	0.4334	2E-11	(MTAG)	0.0112	[0.0079-0.0145] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
748	chr7	21410034	21410035	rs6964771	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	7p15.3	RNU1-15P	rs6964771-C	NR	2E-9		5.981	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
748	chr7	21412761	21412762	rs62439688	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	7p15.3	RNU1-15P	rs62439688-T	NR	9E-9		0.021361288	[0.014-0.029] unit increase	Affymetrix [NR]	N
748	chr7	21417555	21417556	rs62439690	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p15.3	NR	rs62439690-A	0.22227	1E-10				Affymetrix, Illumina [24246363] (imputed)	N
748	chr7	21417555	21417556	rs62439690	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	7p15.3	RNU1-15P	rs62439690-A	NR	2E-10		6.33	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
748	chr7	21417962	21417963	rs6979354	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	7p15.3	NR	rs6979354-C		6E-10		0.07	[0.05-0.09] unit increase	NR [NR]	N
748	chr7	21417962	21417963	rs6979354	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	7p15.3	RNU1-15P	rs6979354-T	NR	2E-11		0.019545656	[0.014-0.025] unit increase	Affymetrix [NR]	N
748	chr7	21447861	21447862	rs55892601	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	7p15.3	NR	rs55892601-T	NR	9E-15		0.0268	[0.02-0.034] unit decrease	Affymetrix [9000000] (imputed)	N
748	chr7	21447861	21447862	rs55892601	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	7p15.3	NR	rs55892601-T	NR	5E-14		0.026	[0.019-0.033] unit decrease	Affymetrix [9000000] (imputed)	N
748	chr7	21447861	21447862	rs55892601	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	7p15.3	NR	rs55892601-T	NR	9E-12		0.0236	[0.017-0.03] unit decrease	Affymetrix [9000000] (imputed)	N
748	chr7	21449450	21449451	rs28406917	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	7p15.3	SP4	rs28406917-C	0.572373	2E-8		0.0119167	[0.0078-0.0161] unit decrease	Affymetrix [NR] (imputed)	N
748	chr7	21449450	21449451	rs28406917	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	7p15.3	SP4	rs28406917-C	0.572425	2E-10		0.0134105	[0.0093-0.0175] unit decrease	Affymetrix [NR] (imputed)	N
748	chr7	21451557	21451558	rs76218671	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	7p15.3	NR	rs76218671-C	NR	1E-11		0.0435	[0.031-0.056] unit increase	Affymetrix [9000000] (imputed)	N
748	chr7	21451557	21451558	rs76218671	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	7p15.3	NR	rs76218671-C	NR	6E-13		0.0464	[0.034-0.059] unit increase	Affymetrix [9000000] (imputed)	N
748	chr7	21467189	21467190	rs39302	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	7p15.3	NR	rs39302-T	0.196819	5E-9		0.04602479	[0.031-0.061] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
748	chr7	21467189	21467190	rs39302	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	7p15.3	Intergenic	rs39302-T	0.2011	8E-10	(MTAG)	0.0176	[0.012-0.023] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
748	chr7	21467189	21467190	rs39302	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	7p15.3	Intergenic	rs39302-T	0.2011	4E-9		0.0209	[0.014-0.028] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
748	chr7	21467189	21467190	rs39302	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	7p15.3	SP4	rs39302-T	NR	3E-8		5.55	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
748	chr7	21470535	21470536	rs40245	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	7p15.3		rs40245-?	NR	3E-8				NR [~ 8900000] (imputed)	N
748	chr7	21485396	21485397	rs2390536	29348612	Wiemels JL	2018-01-18	Nat Commun	GWAS in childhood acute lymphoblastic leukemia reveals novel genetic associations at chromosomes 17q12 and 8q24.21.	Acute lymphoblastic leukemia (childhood)	1,949 Latino cases, 8,584 Latino controls, 1,184 European ancestry cases, 3551 European ancestry controls, 130 African American cases, 3,842 African American controls	959 European ancestry cases,  2,624 European ancestry controls, 530 Latino cases, 511 Latino controls	7p15.3	SP4	rs2390536-A	NR	2E-8		1.18	[1.11-1.24]	Affymetrix [757935]	N
748	chr7	21488928	21488929	rs2107449	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	7p15.3	SP4	rs2107449-G	0.379243	3E-9		0.013753845	[0.0092-0.0183] unit increase	Affymetrix [93095623] (imputed)	N
748	chr7	21492588	21492589	rs6954854	34002096	Mullins N	2021-05-17	Nat Genet	Genome-wide association study of more than 40,000 bipolar disorder cases provides new insights into the underlying biology.	Bipolar disorder	41,917 European ancestry cases, 371,549 European ancestry controls	NA	7p15.3	SP4	rs6954854-G	0.425	6E-10		1.06003	[1.04-1.08]	Affymetrix, Illumina [7549318] (imputed)	N
748	chr7	21492588	21492589	rs6954854	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	7p15.3	SP4, DNAH11	rs6954854-G	0.42600000000000005	4E-7		1.0583354		NR [9372253] (imputed)	N
749	chr7	21496426	21496427	rs6461564	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7p15.3	NR	rs6461564-T	NR	7E-7		0.019	unit decrease	Affymetrix [at least 7091467] (imputed)	N
749	chr7	21496426	21496427	rs6461564	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7p15.3	NR	rs6461564-T	0.647	2E-7	(EA)	0.023	unit decrease	Affymetrix [at least 7091467] (imputed)	N
749	chr7	21496426	21496427	rs6461564	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7p15.3	NR	rs6461564-T	NR	2E-9		0.026	unit decrease	Affymetrix [at least 7091467] (imputed)	N
749	chr7	21496426	21496427	rs6461564	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7p15.3	NR	rs6461564-T	0.647	1E-8	(EA)	0.028	unit decrease	Affymetrix [at least 7091467] (imputed)	N
749	chr7	21496426	21496427	rs6461564	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7p15.3	NR	rs6461564-T	NR	2E-7		0.023	unit decrease	Affymetrix [at least 7091467] (imputed)	N
749	chr7	21496426	21496427	rs6461564	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7p15.3	NR	rs6461564-T	0.647	2E-7	(EA)	0.026	unit decrease	Affymetrix [at least 7091467] (imputed)	N
749	chr7	21499827	21499828	rs4722033	34002096	Mullins N	2021-05-17	Nat Genet	Genome-wide association study of more than 40,000 bipolar disorder cases provides new insights into the underlying biology.	Bipolar I disorder	25,060 European ancestry cases, 449,978 European ancestry controls	NA	7p15.3	NR	rs4722033-G	0.386	1E-8		1.06919	[1.05-1.09]	Affymetrix, Illumina [7549318] (imputed)	N
749	chr7	21504426	21504427	rs17144465	20125088	Shi J	2010-02-02	Mol Psychiatry	Genome-wide association study of recurrent early-onset major depressive disorder.	Major depressive disorder	1,020 European ancestry cases, 1,636 European ancestry controls	NA	7p15.3	SP4	rs17144465-G	0.04	6E-6		1.82		Affymetrix [671424]	N
749	chr7	21504426	21504427	rs17144465	20038947	Shyn SI	2009-12-29	Mol Psychiatry	Novel loci for major depression identified by genome-wide association study of Sequenced Treatment Alternatives to Relieve Depression and meta-analysis of three studies.	Major depressive disorder (broad)	3,957 European ancestry cases, 3,428 European ancestry controls	NA	7p15.3	SP4	rs17144465-G	0.03	8E-7		1.56	[NR]	Affymetrix, Perlegen [2391203] (imputed)	N
749	chr7	21513358	21513359	rs1989985	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	VLDL cholesterol levels	115,082 European ancestry individuals	NA	7p15.3		rs1989985-C	0.61714	3E-8		0.0234816	[0.015-0.032] unit decrease	NR [11722792] (imputed)	N
749	chr7	21513358	21513359	rs1989985	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small VLDL	115,082 European ancestry individuals	NA	7p15.3		rs1989985-C	0.61714	2E-8		0.0239199	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
749	chr7	21513358	21513359	rs1989985	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	7p15.3		rs1989985-C	0.61714	2E-8		0.0239442	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
749	chr7	21513358	21513359	rs1989985	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	7p15.3		rs1989985-C	0.61714	5E-8		0.0231812	[0.015-0.032] unit decrease	NR [11722792] (imputed)	N
749	chr7	21513358	21513359	rs1989985	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small VLDL	115,082 European ancestry individuals	NA	7p15.3		rs1989985-C	0.61714	4E-9		0.025004	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
749	chr7	21513358	21513359	rs1989985	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in VLDL	115,082 European ancestry individuals	NA	7p15.3		rs1989985-C	0.61714	2E-8		0.0240791	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
749	chr7	21513358	21513359	rs1989985	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	7p15.3		rs1989985-C	0.61714	5E-9		0.0248286	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
749	chr7	21520131	21520132	rs10272006	31311600	Namjou B	2019-07-17	BMC Med	GWAS and enrichment analyses of non-alcoholic fatty liver disease identify new trait-associated genes and pathways across eMERGE Network.	Aspartate aminotransferase levels in non-alcoholic fatty liver disease	1,075 European ancestry individuals	NA	7p15.3	SP4	rs10272006-G	0.331937	6E-9		0.248191	[0.17-0.33] unit increase	NR [7263501] (imputed)	N
749	chr7	21520211	21520212	rs73060317	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	67,764 individuals	NA	7p15.3	NR	rs73060317-?		4E-8				NR [8377093]	N
749	chr7	21520211	21520212	rs73060317	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	7p15.3	NR	rs73060317-T	NR	8E-7		1.06	[NR]	Illumina [7158791] (imputed)	N
749	chr7	21523193	21523194	rs6948810	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	7p15.3	NR	rs6948810-T	NR	3E-8		5.536	z score increase	Affymetrix [10847151] (imputed)	N
749	chr7	21529594	21529595	rs1011167	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	7p15.3	NR	rs1011167-C	0.365559	2E-11		0.012877	[0.0091-0.0166] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
749	chr7	21529594	21529595	rs1011167	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	7p15.3		rs1011167-?	NR	4E-8				NR [~ 8900000] (imputed)	N
749	chr7	21534151	21534152	rs7811417	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	7p15.3	NR	rs7811417-?	NR	2E-8		1.05022	[1.03-1.07]	Affymetrix, Illumina [12447948] (imputed)	N
749	chr7	21534151	21534152	rs7811417	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	7p15.3	SP4	rs7811417-T	NR	3E-7		1.05	[1.03-1.07]	Illumina [6627481] (imputed)	N
749	chr7	21534151	21534152	rs7811417	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	7p15.3	intergenic	rs7811417-T	NR	2E-7		1.05	[1.03-1.07]	Affymetrix, Illumina [up to 5107227] (imputed)	N
749	chr7	21552994	21552995	rs7798894	33830993	Johnston KJA	2021-04-08	PLoS Genet	Sex-stratified genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	387,649 British ancestry individuals	NA	7p15.3	SP4	rs7798894-?	NR	3E-8			[NR]	NR [NR] (imputed)	N
749	chr7	21552994	21552995	rs7798894	31194737	Johnston KJA	2019-06-13	PLoS Genet	Genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	387,649 British ancestry individuals	NA	7p15.3	SP4	rs7798894-A	0.2888	2E-8		0.0153	[0.01-0.021] unit increase	NR [NR]	N
749	chr7	21557361	21557362	rs11974306	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	7p15.3	DNAH11	rs11974306-?	NR	8E-7	(orotic acid)	0.18848148	[0.11-0.26] unit decrease	Affymetrix [at least 2500000] (imputed)	N
749	chr7	21567330	21567331	rs28459049	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	7p15.3	NR	rs28459049-C	0.787203	1E-10		0.00897459	[0.006-0.0119] unit increase	Affymetrix [16585854] (imputed)	N
749	chr7	21567330	21567331	rs28459049	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	7p15.3	NR	rs28459049-C	0.787203	5E-6		0.00722718	[0.0038-0.0106] unit increase	Affymetrix [16585866] (imputed)	N
749	chr7	21569088	21569089	rs10277163	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	7p15.3		rs10277163-?	NR	1E-9		0.0143336	[0.0097-0.0189] unit decrease	NR [6912294] (imputed)	N
749	chr7	21571931	21571932	rs111529171	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	7p15.3	NR	rs111529171-C	NR	2E-9		0.0178	[0.012-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
749	chr7	21571931	21571932	rs111529171	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	7p15.3	NR	rs111529171-C	0.216376	6E-11		0.015488	[0.011-0.02] unit decrease	Affymetrix [16668957] (imputed)	N
749	chr7	21577959	21577960	rs10085881	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	417,580 European ancestry individuals	NA	7p15.3		rs10085881-T	0.717815	2E-11		0.015	[0.011-0.019] unit decrease	NR [7250403] (imputed)	N
749	chr7	21580678	21580679	rs7788515	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	7p15.3	NR	rs7788515-G	0.4984	1E-17				NR [9056863] (imputed)	N
749	chr7	21581606	21581607	rs976517	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	7p15.3	NR	rs976517-?	NR	5E-7		5.009	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
749	chr7	21582916	21582917	rs2285942	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7p15.3	NR	rs2285942-C	NR	2E-6		0.026	unit decrease	Affymetrix [at least 7091467] (imputed)	N
749	chr7	21582916	21582917	rs2285942	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7p15.3	NR	rs2285942-C	0.854	7E-6	(EA)	0.027	unit decrease	Affymetrix [at least 7091467] (imputed)	N
749	chr7	21582916	21582917	rs2285942	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7p15.3	NR	rs2285942-C	NR	7E-6		0.028	unit decrease	Affymetrix [at least 7091467] (imputed)	N
749	chr7	21582916	21582917	rs2285942	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7p15.3	NR	rs2285942-C	0.854	4E-7	(EA)	0.034	unit decrease	Affymetrix [at least 7091467] (imputed)	N
749	chr7	21583518	21583519	rs6970597	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	7p15.3		rs6970597-C	0.49	4E-17		8.41	z score increase	Affymetrix [9061022] (imputed)	N
749	chr7	21583920	21583921	rs10229224	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	7p15.3		rs10229224-G	0.48	3E-22		9.69	z score increase	Affymetrix [9061022] (imputed)	N
749	chr7	21583920	21583921	rs10229224	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	7p15.3	MARCH4, SMARCAL1, RPL37A	rs10229224-?		7E-11				NR [7428630] (imputed)	N
749	chr7	21583920	21583921	rs10229224	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	7p15.3	DNAH11	rs10229224-?		3E-11				NR [7428630] (imputed)	N
749	chr7	21584087	21584088	rs2285947	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	7p15.3	NR	rs2285947-A	NR	2E-21		0.0225	[0.018-0.027] unit increase	Affymetrix [9000000] (imputed)	N
749	chr7	21584087	21584088	rs2285947	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	7p15.3	NR	rs2285947-A	NR	1E-22		0.0232	[0.018-0.028] unit increase	Affymetrix [9000000] (imputed)	N
749	chr7	21584087	21584088	rs2285947	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	7p15.3	NR	rs2285947-A	NR	3E-20		0.0219	[0.017-0.027] unit increase	Affymetrix [9000000] (imputed)	N
749	chr7	21584087	21584088	rs2285947	23103227	Jin G	2012-10-25	Am J Hum Genet	Genetic variants at 6p21.1 and 7p15.3 are associated with risk of multiple cancers in Han Chinese.	Multiple cancers (lung cancer, gastric cancer, and squamous cell carcinoma)	2,331 Han Chinese ancestry lung cancer cases, 1,006 Han Chinese ancestry non-cardia gastric cancer cases, 2,031 Han Chinese ancestry esophageal squamous-cell carcinoma cases, 4,006 Han Chinese ancestry controls	2,665 Han Chinese ancestry lung cancer cases, 3,330 Han Chinese ancestry non-cardia gastric cancer cases, 3,006 Han Chinese ancestry esophageal squamous-cell carcinoma cases, 11,436 Han Chinese ancestry controls	7p15.3	SP4, DNAH11	rs2285947-A	0.27	3E-6	(ESCC)	1.14	[1.08-1.21]	Affymetrix [NR]	N
749	chr7	21584087	21584088	rs2285947	23103227	Jin G	2012-10-25	Am J Hum Genet	Genetic variants at 6p21.1 and 7p15.3 are associated with risk of multiple cancers in Han Chinese.	Multiple cancers (lung cancer, gastric cancer, and squamous cell carcinoma)	2,331 Han Chinese ancestry lung cancer cases, 1,006 Han Chinese ancestry non-cardia gastric cancer cases, 2,031 Han Chinese ancestry esophageal squamous-cell carcinoma cases, 4,006 Han Chinese ancestry controls	2,665 Han Chinese ancestry lung cancer cases, 3,330 Han Chinese ancestry non-cardia gastric cancer cases, 3,006 Han Chinese ancestry esophageal squamous-cell carcinoma cases, 11,436 Han Chinese ancestry controls	7p15.3	SP4, DNAH11	rs2285947-A	0.27	1E-6	(NCGC)	1.14	[1.08-1.21]	Affymetrix [NR]	N
749	chr7	21584087	21584088	rs2285947	23103227	Jin G	2012-10-25	Am J Hum Genet	Genetic variants at 6p21.1 and 7p15.3 are associated with risk of multiple cancers in Han Chinese.	Multiple cancers (lung cancer, gastric cancer, and squamous cell carcinoma)	2,331 Han Chinese ancestry lung cancer cases, 1,006 Han Chinese ancestry non-cardia gastric cancer cases, 2,031 Han Chinese ancestry esophageal squamous-cell carcinoma cases, 4,006 Han Chinese ancestry controls	2,665 Han Chinese ancestry lung cancer cases, 3,330 Han Chinese ancestry non-cardia gastric cancer cases, 3,006 Han Chinese ancestry esophageal squamous-cell carcinoma cases, 11,436 Han Chinese ancestry controls	7p15.3	SP4, DNAH11	rs2285947-A	0.27	1E-16	(All Cancers)	1.17	[1.12-1.21]	Affymetrix [NR]	N
749	chr7	21584087	21584088	rs2285947	23103227	Jin G	2012-10-25	Am J Hum Genet	Genetic variants at 6p21.1 and 7p15.3 are associated with risk of multiple cancers in Han Chinese.	Multiple cancers (lung cancer, gastric cancer, and squamous cell carcinoma)	2,331 Han Chinese ancestry lung cancer cases, 1,006 Han Chinese ancestry non-cardia gastric cancer cases, 2,031 Han Chinese ancestry esophageal squamous-cell carcinoma cases, 4,006 Han Chinese ancestry controls	2,665 Han Chinese ancestry lung cancer cases, 3,330 Han Chinese ancestry non-cardia gastric cancer cases, 3,006 Han Chinese ancestry esophageal squamous-cell carcinoma cases, 11,436 Han Chinese ancestry controls	7p15.3	DNAH11, SP4	rs2285947-A	0.26	2E-8	(Lung Cancer)	1.17	[1.11-1.24]	Affymetrix [NR]	N
749	chr7	21589082	21589083	rs4358685	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs for peptic ulcer and gastro-oesophageal reflux disease)	53,137 European ancestry cases, 79,230 European ancestry controls, 53,363 East Asian ancestry cases, 125,363 East Asian ancestry controls	NA	7p15.3		rs4358685-G	NR	7E-9		0.0447	[0.03-0.06] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
749	chr7	21589242	21589243	rs4639414	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls	NA	7p15.3	DNAH11	rs4639414-G	0.230148	4E-15		0.052494586	[0.039-0.066] unit increase	Affymetrix [7288503] (imputed)	N
749	chr7	21592972	21592973	rs73066442	27005778	Kettunen J	2016-03-23	Nat Commun	Genome-wide study for circulating metabolites identifies 62 loci and reveals novel systemic effects of LPA.	Metabolite levels (lipoprotein measures)	2,118 Erasmus Rucphen (founder/genetic isolate), 22,807 European ancestry individuals	NA	7p15.3	DNAH11	rs73066442-G	0.25	1E-10	(Phospholipids in large LDL)	0.08	[0.06-0.1] unit increase	Affymetrix, Illumina, Perlegen [12133295] (imputed)	N
749	chr7	21597486	21597487	rs59509802	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	7p15.3		rs59509802-C	NR	2E-27		0.0242	[0.02-0.029] unit increase	Affymetrix, Illumina [20536134] (imputed)	N
749	chr7	21597486	21597487	rs59509802	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls, 33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	7p15.3		rs59509802-C	NR	8E-19		0.049	[0.038-0.06] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
749	chr7	21597486	21597487	rs59509802	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	7p15.3		rs59509802-C	NR	3E-30		0.028	[0.023-0.033] unit increase	Affymetrix, Illumina [20521447] (imputed)	N
749	chr7	21598752	21598753	rs56130071	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	7p15.3	DNAH11	rs56130071-G	0.783015	5E-39		0.0331915	[0.028-0.038] unit decrease	Affymetrix [NR] (imputed)	N
749	chr7	21598752	21598753	rs56130071	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7p15.3	NR	rs56130071-G	NR	3E-6		0.022	unit decrease	Affymetrix [at least 7091467] (imputed)	N
749	chr7	21598752	21598753	rs56130071	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7p15.3	NR	rs56130071-G	0.798	8E-6	(EA)	0.023	unit decrease	Affymetrix [at least 7091467] (imputed)	N
749	chr7	21598752	21598753	rs56130071	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7p15.3	NR	rs56130071-G	NR	6E-8		0.028	unit decrease	Affymetrix [at least 7091467] (imputed)	N
749	chr7	21598752	21598753	rs56130071	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7p15.3	NR	rs56130071-G	0.798	1E-7	(EA)	0.03	unit decrease	Affymetrix [at least 7091467] (imputed)	N
749	chr7	21598752	21598753	rs56130071	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7p15.3	NR	rs56130071-G	NR	9E-6		0.024	unit decrease	Affymetrix [at least 7091467] (imputed)	N
749	chr7	21598752	21598753	rs56130071	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	LDL cholesterol	up 62,166 European ancestry individuals	NA	7p15.3	DNAH11	rs56130071-C	0.21	2E-14		0.057	[0.043-0.071] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
749	chr7	21601659	21601659	rs150169808	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	7p15.3		rs150169808-G	0.782035	2E-8		0.0277201	[0.018-0.037] unit decrease	NR [11722792] (imputed)	N
749	chr7	21601659	21601659	rs150169808	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	7p15.3	NR	rs150169808-G	0.783315	2E-87		0.0462388	[0.042-0.051] unit decrease	Affymetrix [15000001]	N
749	chr7	21601659	21601659	rs150169808	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	7p15.3	DNAH11	rs150169808-?	NR	7E-50		0.0461	[0.041-0.052] unit increase	Affymetrix [5701386] (imputed)	N
749	chr7	21604915	21604916	rs4470903	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	7p15.3		rs4470903-G	NR	5E-20		0.021	[0.016-0.026] unit increase	Affymetrix, Illumina [20535842] (imputed)	N
749	chr7	21604915	21604916	rs4470903	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	7p15.3	DNAH11	rs4470903-C	0.785006	2E-42		0.0345683	[0.03-0.04] unit decrease	Affymetrix [NR] (imputed)	N
749	chr7	21605972	21605973	rs55696093	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Total cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	7p15.3	DNAH11	rs55696093-?		8E-10		0.0232	[0.016-0.031] unit increase	Illumina [31500000] (imputed)	N
749	chr7	21605972	21605973	rs55696093	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Low density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	7p15.3	DNAH11	rs55696093-?		2E-8		0.0259	[0.017-0.035] unit increase	Illumina [31500000] (imputed)	N
749	chr7	21607282	21607283	rs55649657	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very small VLDL	115,082 European ancestry individuals	NA	7p15.3		rs55649657-C	0.780151	4E-8		0.0267759	[0.017-0.036] unit decrease	NR [11722792] (imputed)	N
749	chr7	21607282	21607283	rs55649657	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very small VLDL particles	115,082 European ancestry individuals	NA	7p15.3		rs55649657-C	0.780151	2E-8		0.0275204	[0.018-0.037] unit decrease	NR [11722792] (imputed)	N
749	chr7	21607282	21607283	rs55649657	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7p15.3	NR	rs55649657-C	NR	2E-6		0.023	unit decrease	Affymetrix [at least 7091467] (imputed)	N
749	chr7	21607282	21607283	rs55649657	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7p15.3	NR	rs55649657-C	0.795	8E-6	(EA)	0.023	unit decrease	Affymetrix [at least 7091467] (imputed)	N
749	chr7	21607282	21607283	rs55649657	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7p15.3	NR	rs55649657-C	NR	5E-8		0.029	unit decrease	Affymetrix [at least 7091467] (imputed)	N
749	chr7	21607282	21607283	rs55649657	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7p15.3	NR	rs55649657-C	0.795	6E-8	(EA)	0.031	unit decrease	Affymetrix [at least 7091467] (imputed)	N
749	chr7	21607282	21607283	rs55649657	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7p15.3	NR	rs55649657-C	NR	7E-6		0.024	unit decrease	Affymetrix [at least 7091467] (imputed)	N
749	chr7	21607282	21607283	rs55649657	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7p15.3	NR	rs55649657-C	0.795	7E-6	(EA)	0.026	unit decrease	Affymetrix [at least 7091467] (imputed)	N
749	chr7	21607282	21607283	rs55649657	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	Cholesterol, total	up to 62,166 European ancestry individuals	NA	7p15.3	DNAH11	rs55649657-G	0.21	4E-13		0.052	[0.038-0.066] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
749	chr7	21607351	21607352	rs12670798	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	LDL cholesterol levels	up to 23,353 African ancestry individuals, 13,171 Asian ancestry individuals, up to 82,522 European ancestry individuals, 6,646 Hispanic individuals	NA	7p15.3		rs12670798-T	0.7705	5E-7	(EA)	1.0873	[0.66-1.51] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
749	chr7	21607351	21607352	rs12670798	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7p15.3	NR	rs12670798-T	NR	6E-7		0.022	unit decrease	Affymetrix [at least 7091467] (imputed)	N
749	chr7	21607351	21607352	rs12670798	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7p15.3	NR	rs12670798-T	NR	6E-8		0.026	unit decrease	Affymetrix [at least 7091467] (imputed)	N
749	chr7	21607351	21607352	rs12670798	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7p15.3	NR	rs12670798-T	0.767	6E-8	(EA)	0.029	unit decrease	Affymetrix [at least 7091467] (imputed)	N
749	chr7	21607351	21607352	rs12670798	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7p15.3	NR	rs12670798-T	NR	3E-6		0.023	unit decrease	Affymetrix [at least 7091467] (imputed)	N
749	chr7	21607351	21607352	rs12670798	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7p15.3	NR	rs12670798-T	0.767	3E-6	(EA)	0.026	unit decrease	Affymetrix [at least 7091467] (imputed)	N
749	chr7	21607351	21607352	rs12670798	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Total cholesterol levels	32,576 East Asian ancestry individuals, 187,365 European ancestry individuals	10,855 Chinese ancestry individuals	7p15.3	DNAH11	rs12670798-T	0.776	5E-15	(Trans-ethnic initial)	0.0364	[0.028-0.044] unit decrease (EA Beta values)	Affymetrix, Illumina [up to 1900000] (imputed)	N
749	chr7	21607351	21607352	rs12670798	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	LDL cholesterol levels	32,285 East Asian ancestry individuals, 173,082 European ancestry individuals	8,478 Chinese ancestry individuals	7p15.3	DNAH11	rs12670798-T	0.776	2E-12	(Trans-ethnic initial)	0.0344	[0.026-0.043] unit decrease (EA Beta value)	Affymetrix, Illumina [~ 1900000] (imputed)	N
749	chr7	21607351	21607352	rs12670798	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	7p15.3	DNAH11	rs12670798-C	0.25	5E-14		0.034	[NR] unit increase	NR [NR] (imputed)	N
749	chr7	21607351	21607352	rs12670798	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	7p15.3	DNAH11	rs12670798-C	0.25	1E-16		0.036	[NR] unit increase	NR [NR] (imputed)	N
749	chr7	21607351	21607352	rs12670798	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	LDL cholesterol	95,454 European ancestry individuals	NA	7p15.3	DNAH11	rs12670798-C	0.23	7E-10		1.26	[0.87-1.65] mg/dL increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
749	chr7	21607351	21607352	rs12670798	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	Cholesterol, total	100,184 European ancestry individuals	NA	7p15.3	DNAH11	rs12670798-T	0.15	7E-10		1.7	[1.15-2.25] mg/dL increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
749	chr7	21607351	21607352	rs12670798	19060911	Aulchenko YS	2008-12-07	Nat Genet	Loci influencing lipid levels and coronary heart disease risk in 16 European population cohorts.	LDL cholesterol	17,083 European ancestry individuals, 714 Orcadian individuals	NA	7p15.3	DNAH11	rs12670798-G	0.24	6E-9		0.09	[NR] s.d. increase	Affymetrix, Illumina [up to 600000]	N
749	chr7	21607351	21607352	rs12670798	19060911	Aulchenko YS	2008-12-07	Nat Genet	Loci influencing lipid levels and coronary heart disease risk in 16 European population cohorts.	Cholesterol, total	21,848 European ancestry individuals, 714 Orcadian individuals	NA	7p15.3	DNAH11	rs12670798-G	0.24	9E-7		0.06	[NR] s.d. increase	Affymetrix, Illumina [up to 600000]	N
749	chr7	21610378	21610379	rs6965956	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (drugs for peptic ulcer and gastro-oesophageal reflux disease)	53,137 European ancestry cases, 79,230 European ancestry controls	NA	7p15.3	DNAH11	rs6965956-A	0.4279	9E-11		0.050471477	[0.035-0.066] unit increase	Affymetrix [7288503] (imputed)	N
749	chr7	21611398	21611399	rs66476925	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	7p15.3	DNAH11	rs66476925-C	NR	6E-23	(EA)			Affymetrix, Illumina [NR] (imputed)	N
749	chr7	21611398	21611399	rs66476925	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	7p15.3	DNAH11	rs66476925-C	NR	3E-24				Affymetrix, Illumina [NR] (imputed)	N
749	chr7	21611398	21611399	rs66476925	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	7p15.3	DNAH11	rs66476925-C	NR	5E-27				Affymetrix, Illumina [NR] (imputed)	N
749	chr7	21611398	21611399	rs66476925	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	7p15.3	DNAH11	rs66476925-C	NR	2E-25	(EA)			Affymetrix, Illumina [NR] (imputed)	N
749	chr7	21611398	21611399	rs66476925	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	7p15.3	DNAH11	rs66476925-C	NR	7E-9	(EA)	1.288	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
749	chr7	21611398	21611399	rs66476925	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	7p15.3	DNAH11	rs66476925-C	NR	2E-9		1.076	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
749	chr7	21611398	21611399	rs66476925	30670697	Kilpelainen TO	2019-01-22	Nat Commun	Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity.	LDL cholesterol x physical activity interaction (2df test)	7,260 African American inactive individuals, 12,761 African American active individuals, 2,740 Asian ancestry inactive individuals, 3,615 Asian ancestry active individuals, 22,378 European ancestry inactive individuals, 55,310 European ancestry active individuals, 2,163 Hispanic or Latin American inactive individuals, 3,461 Hispanic or Latin American active individuals	571 African American inactive individuals, 1,521 African American active individuals, 1,217 South African Black ancestry inactive individuals, 389 South African Black ancestry active individuals, 2,495 East Asian ancestry inactive individuals, 1,947 East Asian ancestry active individuals,  724 South Asian ancestry inactive individuals, 1,425 South Asian ancestry active individuals,  33,796 European ancestry inactive individuals, 50,812 European ancestry active individuals, 2,578 Hispanic inactive individuals, 8,661 Hispanic active individuals	7p15.3	NR	rs66476925-C	0.1829	1E-13				Affymetrix, Illumina [at least 2500000] (imputed)	N
749	chr7	21611398	21611399	rs66476925	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	7p15.3	DNAH11	rs66476925-C	0.1868	9E-19		0.0316	[0.025-0.039] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
749	chr7	21611969	21611970	rs73066485	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	7p15.3	DNAH11	rs73066485-T	0.8132	2E-16		0.0295	[0.022-0.037] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
749	chr7	21613330	21613331	rs55718143	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very small VLDL	115,082 European ancestry individuals	NA	7p15.3		rs55718143-A	0.827884	1E-8		0.0304561	[0.02-0.041] unit decrease	NR [11722792] (imputed)	N
749	chr7	21617088	21617089	rs7803297	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	7p15.3	DNAH11	rs7803297-T	0.172	1E-11		0.5955	[0.42-0.77] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
749	chr7	21622493	21622494	rs62441680	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	7p15.3	DNAH11	rs62441680-C	0.17	2E-13		0.62	[0.46-0.78] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
750	chr7	21631826	21631827	rs73070437	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	7p15.3	NR	rs73070437-G	NR	4E-12		0.0335	[0.024-0.043] unit increase	Affymetrix [9000000] (imputed)	N
750	chr7	21631826	21631827	rs73070437	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	7p15.3	NR	rs73070437-G	NR	2E-13		0.0353	[0.026-0.045] unit increase	Affymetrix [9000000] (imputed)	N
750	chr7	21631826	21631827	rs73070437	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	7p15.3	NR	rs73070437-G	NR	8E-13		0.0346	[0.025-0.044] unit increase	Affymetrix [9000000] (imputed)	N
750	chr7	21642086	21642087	rs1533992	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	7p15.3	NA	rs1533992-T	0.0541	4E-8	(Female)	1.0940919	[1.06-1.13]	Affymetrix, Illumina [NR] (imputed)	N
750	chr7	21653454	21653455	rs7801945	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Recurrent major depressive disorder x sex interaction	5,314 European ancestry cases, 10,149 European ancestry controls	NA	7p15.3	DNAH11	rs7801945-C	0.4229	7E-6		0.2077	[0.12-0.3] unit decrease	NR [NR] (imputed)	N
750	chr7	21666901	21666902	rs117739669	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in hypertension	398 Korean ancestry cases, 15,909 Korean ancestry controls	NA	7p15.3		rs117739669-A	0.0556	8E-6		1.774	[1.379-2.282]	Affymetrix [7975321] (imputed)	N
750	chr7	21680565	21680566	rs10950865	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	7p15.3	NR	rs10950865-C	NR	1E-10		0.0167	[0.012-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
750	chr7	21680565	21680566	rs10950865	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	7p15.3	NR	rs10950865-C	NR	6E-13		0.0187	[0.014-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
750	chr7	21680565	21680566	rs10950865	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	7p15.3	NR	rs10950865-C	NR	2E-12		0.0184	[0.013-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
750	chr7	21685860	21685861	rs13238939	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	7p15.3		rs13238939-C	0.490584	1E-10		0.0257427	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
750	chr7	21685860	21685861	rs13238939	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	7p15.3		rs13238939-C	0.490584	2E-9		0.0236069	[0.016-0.031] unit increase	NR [11722792] (imputed)	N
750	chr7	21687924	21687925	rs2030672	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	7p15.3	NR	rs2030672-C	0.5589	1E-8		1.035	[1.02-1.05]	Affymetrix, Illumina [NR] (imputed)	N
750	chr7	21687924	21687925	rs2030672	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	7p15.3	Intergenic	rs2030672-G	0.4441	2E-8		0.0129	[0.0084-0.0174] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
750	chr7	21690605	21690606	rs10499535	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	7p15.3	Intergenic	rs10499535-A	0.5078	4E-10	(MTAG)	0.0103	[0.0072-0.0134] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
750	chr7	21690605	21690606	rs10499535	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	7p15.3		rs10499535-A	0.5013	1E-8		0.008	[0.0053-0.0107] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
750	chr7	21690605	21690606	rs10499535	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	7p15.3	Intergenic	rs10499535-A	0.5013	7E-11	(MTAG)	0.0085	[0.006-0.011] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
750	chr7	21723128	21723128	rs35803309	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-1-receptor antagonist levels	3,638 Finnish ancestry individuals	NA	7p15.3	NR	rs35803309-AT		2E-7		0.208	[0.13-0.29] SD units decrease	NR [10700000] (imputed)	N
750	chr7	21742973	21742974	rs368331	21116278	Furney SJ	2010-11-30	Mol Psychiatry	Genome-wide association with MRI atrophy measures as a quantitative trait locus for Alzheimer's disease.	Whole-brain volume	434 European ancestry mild cognitive impairment cases, 245 European ancestry Alzheimer's disease cases, 284 European ancestry controls	NA	7p15.3	DNAH11	rs368331-?	NR	4E-6		0.021	[NR] unit decrease	Illumina [478011]	N
750	chr7	21742973	21742974	rs368331	21116278	Furney SJ	2010-11-30	Mol Psychiatry	Genome-wide association with MRI atrophy measures as a quantitative trait locus for Alzheimer's disease.	Total ventricular volume	424 European ancestry mild cognitive impairment cases, 236 European ancestry Alzheimer's disease cases, 279 European ancestry controls	NA	7p15.3	DNAH11	rs368331-?	NR	2E-6		0.009	[NR] unit increase	Illumina [478011]	N
751	chr7	21776105	21776106	rs2906680	30172743	Liang X	2018-08-30	Bone	Assessing the genetic correlations between early growth parameters and bone mineral density: A polygenic risk score analysis.	Bone mineral density (hip)	2,286 European ancestry individuals	NA	7p15.3	DNAH11	rs2906680-?	NR	3E-6				Affymetrix [753382]	N
751	chr7	21801877	21801878	rs10256021	31991592	Coltell O	2020-01-24	Nutrients	Genome-Wide Association Study for Serum Omega-3 and Omega-6 Polyunsaturated Fatty Acids: Exploratory Analysis of the Sex-Specific Effects and Dietary Modulation in Mediterranean Subjects with Metabolic Syndrome.	Serum total polyunsaturated fatty acid concentration in metabolic syndrome	426 Mediterranean individuals	NA	7p15.3	DNAH11	rs10256021-?	NR	5E-6				Illumina [621723]	N
751	chr7	21801877	21801878	rs10256021	31991592	Coltell O	2020-01-24	Nutrients	Genome-Wide Association Study for Serum Omega-3 and Omega-6 Polyunsaturated Fatty Acids: Exploratory Analysis of the Sex-Specific Effects and Dietary Modulation in Mediterranean Subjects with Metabolic Syndrome.	Serum omega-6 polyunsaturated fatty acid concentration in metabolic syndrome	426 Mediterranean individuals	NA	7p15.3	DNAH11	rs10256021-G	0.355	4E-6		0.706	unit decrease	Illumina [621723]	N
751	chr7	21812042	21812043	rs35389879	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	7p15.3	NR	rs35389879-T	NR	1E-8		1.042	[1.03-1.06]	Affymetrix, Illumina [29235255] (imputed)	N
751	chr7	21814838	21814839	rs17145367	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	7p15.3	DNAH11	rs17145367-?	NR	7E-6	(kynurenine)	0.40160373	[0.23-0.58] unit increase	Affymetrix [at least 2500000] (imputed)	N
751	chr7	21822909	21822910	rs17358098	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (unclassified genus belonging to family Clostridiaceae)	1,068 Japanese ancestry individuals	NA	7p15.3	DNAH11	rs17358098-T	0.04	3E-6	(female)	0.612	[0.36-0.87] unit decrease	Illumina [6380737] (imputed)	N
751	chr7	21828335	21828336	rs57111797	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	7,894 Sub-Saharan African ancestry individuals	NA	7p15.3		rs57111797-T	0.93947	7E-6		0.0177334	[0.01-0.025] unit decrease	Illumina [13900000] (imputed)	N
751	chr7	21838623	21838624	rs148978132	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		DNAH11	rs148978132-?	NR	5E-9		2.04851	[NR] unit increase	Affymetrix [NR] (imputed)	N
751	chr7	21861111	21861112	rs2390593	24468470	Zhang C	2013-12-26	Neurobiol Aging	Genetic susceptibility to accelerated cognitive decline in the US Health and Retirement Study.	Cognitive decline (age-related)	5,765 European ancestry individuals, 890 African American individuals	NA	7p15.3	DNAH11	rs2390593-?	NR	4E-6	(EA)	0.0141	[0.008135-0.02006] unit increase	Illumina [1530316]	N
751	chr7	21876685	21876691	rs144185241	33590662	Heilbronner U	2021-02-15	Am J Med Genet B Neuropsychiatr Genet	"The Heidelberg Five" personality dimensions: Genome-wide associations, polygenic risk for neuroticism, and psychopathology 20 years after assessment.	Lack of behavioral control	3,268 European ancestry individuals	NA	7p15.3	NR	rs144185241-GATATTA	0.9304	2E-6		0.2333	[0.14-0.33] unit increase	Illumina [8348463] (imputed)	N
751	chr7	21885022	21885023	rs2189024	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure in major depressive disorder-negative individuals	10,701 European ancestry cases, 39,677 European ancestry controls	NA	7p15.3	NR	rs2189024-C	0.716871	9E-6		1.128	[1.07-1.18]	Affymetrix [7791636] (imputed)	N
752	chr7	21894372	21894373	rs62445864	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	7p15.3	NR	rs62445864-?	NR	1E-8				Illumina [7760689] (imputed)	N
752	chr7	21928078	21928079	rs57104699	26007630	Swaminathan B	2015-05-26	Nat Commun	Variants in ELL2 influencing immunoglobulin levels associate with multiple myeloma.	Multiple myeloma and monoclonal gammopathy	2,194 European ancestry multiple myeloma cases, 251 European ancestry monoclonal gammopathy cases, 294,390 European ancestry controls	586 European ancestry multiple myeloma cases, 2,111 European ancestry controls	7p15.3	DNAH11, CDCA7L	rs57104699-C	0.66	2E-8		0.19	[NR] unit increase	Illumina [12100000] (imputed)	N
752	chr7	21928078	21928079	rs57104699	26007630	Swaminathan B	2015-05-26	Nat Commun	Variants in ELL2 influencing immunoglobulin levels associate with multiple myeloma.	Multiple myeloma	2,194 European ancestry cases, 222,555 European ancestry controls	586 European ancestry cases, 2,111 European ancestry controls	7p15.3	CDCA7L, DNAH11	rs57104699-C	0.66	4E-8		0.2	unit increase	Illumina [12100000] (imputed)	N
752	chr7	21938239	21938240	rs4487645	33875642	Duran-Lozano L	2021-04-19	Blood Cancer J	Germline variants at SOHLH2 influence multiple myeloma risk.	Multiple myeloma	4,376 European ancestry cases, 345,887 European ancestry controls	5,598 European ancestry cases, 15,261 European ancestry controls	7p15.3	CDCA7L	rs4487645-C	0.66	5E-15		1.26	[NR]	Illumina [33000000] (imputed)	N
752	chr7	21938239	21938240	rs4487645	31935283	Du Z	2020-01-01	Blood Adv	A meta-analysis of genome-wide association studies of multiple myeloma among men and women of African ancestry.	Multiple myeloma	1,813 African American and African ancestry cases, 8,871 African American and African ancestry controls	NA	7p15.3	NR	rs4487645-C	0.89	4E-6		1.38	[1.20-1.57]	Illumina [12683648] (imputed)	N
752	chr7	21938239	21938240	rs4487645	28025584	da Silva Filho MI	2016-12-27	Leukemia	Genome-wide association study of immunoglobulin light chain amyloidosis in three patient cohorts: comparison with myeloma.	Immunoglobulin light chain (AL) amyloidosis	1,229 cases, 7,526 controls	NA	7p15.3		rs4487645-C	0.67	2E-9		1.35	[1.22-1.49]	Affymetrix, Illumina [NR] (imputed)	N
752	chr7	21938239	21938240	rs4487645	23502783	Weinhold N	2013-03-17	Nat Genet	The CCND1 c.870G>A polymorphism is a risk factor for t(11;14)(q13;q32) multiple myeloma.	Multiple myeloma (hyperdiploidy)	up to 1,660 European ancestry cases, 7,306 European ancestry controls		7p15.3	NR	rs4487645-C	0.65	1E-9	(HD vs. controls)	1.43	[1.27-1.60]	Illumina [414804]	N
752	chr7	21938239	21938240	rs4487645	22120009	Broderick P	2011-11-27	Nat Genet	Common variation at 3p22.1 and 7p15.3 influences multiple myeloma risk.	Multiple myeloma	1,675 European ancestry cases, 5,903 European ancestry controls	169 European ancestry cases, 927 European ancestry controls	7p15.3	DNAH11	rs4487645-C	0.65	3E-14		1.38	[1.28-1.50]	Illumina [422839]	N
752	chr7	21940959	21940960	rs7971	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	7p15.3		rs7971-A	NR	2E-7		1.03	[1.02-1.04]	Affymetrix, Illumina [NR] (imputed)	N
752	chr7	21940959	21940960	rs7971	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	7p15.3	DNAH11, CDCA7L	rs7971-A	0.65	2E-8	(EA)	1.0416667	[1.02-1.06] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
752	chr7	21944184	21944185	rs4534048	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p15.3	NR	rs4534048-G	0.239541	2E-11				Affymetrix, Illumina [24649327] (imputed)	N
752	chr7	21944184	21944185	rs4534048	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	7p15.3	NR	rs4534048-G	0.291348	2E-10		0.012974	[0.009-0.017] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
752	chr7	21966707	21966708	rs12532102	31219150	Ekenberg C	2019-06-13	J Infect Dis	Single nucleotide polymorphisms in HLA alleles are associated with HIV-1 viral load in demographically diverse, ART-naive participants from the START trial.	Pre-treatment viral load in HIV-1 infection	1,398 European ancestry individuals, 572 Black individuals, 418 Hispanic individuals, 13 Asian ancestry individuals, 39 individuals	NA	7p15.3	CDCA7L	rs12532102-A	0.832	4E-18		0.27	[0.21-0.33] unit increase	Affymetrix [339439]	N
752	chr7	21983076	21983077	rs73061815	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on self-rated math ability (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	7p15.3		rs73061815-?	NR	1E-8				NR [NR]	N
752	chr7	21983076	21983077	rs73061815	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on highest math class (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	7p15.3		rs73061815-?	NR	6E-9				NR [NR]	N
752	chr7	21983076	21983077	rs73061815	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on educational attainment (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	7p15.3		rs73061815-?	NR	6E-9				NR [NR]	N
752	chr7	21983076	21983077	rs73061815	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on cognitive performance (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	7p15.3		rs73061815-?	NR	3E-9				NR [NR]	N
752	chr7	21983076	21983077	rs73061815	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on average household income before tax (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	7p15.3		rs73061815-?	NR	3E-9				NR [NR]	N
752	chr7	21983076	21983077	rs73061815	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on Townsend deprivation index (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	7p15.3		rs73061815-?	NR	2E-9				NR [NR]	N
752	chr7	21983076	21983077	rs73061815	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Neuroticism	170,911 European ancestry individuals	NA	7p15.3	NR	rs73061815-A	0.088	3E-6		0.028542958	[0.017-0.04] unit increase	Affymetrix [up to 6544775] (imputed)	N
753	chr7	22024039	22024040	rs1175000	20189936	Okada Y	2010-02-26	Hum Mol Genet	A genome-wide association study in 19 633 Japanese subjects identified LHX3-QSOX2 and IGF1 as adult height loci.	Height	19,633 Japanese ancestry individuals	NA	7p15.3	CDCA7L	rs1175000-C	0.40	5E-6		0.05	[0.03-0.07] cm increase	Illumina [420885]	N
753	chr7	22027211	22027212	rs7783529	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in obese individuals	4,613 European ancestry male individuals, 4,690 European ancestry female individuals, 142 European ancestry individuals	NA	7p15.3	CDCA7L	rs7783529-C	0.63	4E-6	(women)	0.107	[0.062-0.152] kg/m2 decrease	Affymetrix, Illumina [at least 188473] (imputed)	N
753	chr7	22058190	22058191	rs2699450	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		7p15.3	Intergenic	rs2699450-A	0.211	4E-6	(liability model)	0.09	[0.051-0.129] unit increase	NR [19725427] (imputed)	N
753	chr7	22069636	22069637	rs113211131	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Squamous cell lung carcinoma	7,426 European ancestry cases, 55,627 European ancestry controls	NA	7p15.3	CDCA7L, RAPGEF5	rs113211131-G	0.9010466	5E-6		1.1660558	[1.09-1.25]	Illumina [10439017] (imputed)	N
753	chr7	22073747	22073748	rs568569760	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Gamma glutamyl transferase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	7p15.3	CDCA7L, RAPGEF5	rs568569760-?		4E-9		2.3162	[1.54-3.09] unit decrease	Illumina [31500000] (imputed)	N
753	chr7	22098258	22098259	rs1833111	33232274	Mohammadnejad A	2020-11-24	Aging (Albany NY)	Generalized correlation coefficient for genome-wide association analysis of cognitive ability in twins.	Cognitive function (generalized correlation coefficient)	900 Danish ancestry dizygotic twins, 272 Danish ancestry monozygotic twins	NA	7p15.3	NR	rs1833111-?	NR	1E-6			[NR]	Illumina [5779266] (imputed)	N
753	chr7	22109458	22109459	rs10499559	17903292	Hwang SJ	2007-09-19	BMC Med Genet	A genome-wide association for kidney function and endocrine-related traits in the NHLBI's Framingham Heart Study.	Thyroid stimulating hormone levels	883 individuals	NA	7p15.3	RAPGEF5	rs10499559-?	NR	8E-6				Affymetrix [70897]	N
753	chr7	22115453	22115454	rs12539524	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous malignant melanoma	36,760 European ancestry cases, 375,188 European ancestry controls	NA	7p15.3	RAPGEF5	rs12539524-T	0.1541	2E-8		1.0794473	NR	Affymetrix, Illumina [NR] (imputed)	N
753	chr7	22124817	22124818	rs10247376	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder	29,475 European ancestry cases, 63,482 European ancestry controls	NA	7p15.3	NR	rs10247376-C	0.0276479	8E-6		1.071	[1.04-1.1]	Affymetrix [7791636] (imputed)	N
753	chr7	22130272	22130273	rs10253353	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Spatial processing	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	7p15.3	RAPGEF5	rs10253353-A	NR	1E-6		0.12810495	[0.077-0.179] unit decrease	Illumina [> 6200000] (imputed)	N
754	chr7	22154453	22154454	rs13227860	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7p15.3		rs13227860-?	NR	9E-9				NR [~ 8900000] (imputed)	N
754	chr7	22156537	22156538	rs4507656	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	7p15.3		rs4507656-?	NR	3E-9				NR [~ 8900000] (imputed)	N
754	chr7	22156537	22156538	rs4507656	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	NA	7p15.3	RAPGEF5	rs4507656-C	0.6934	9E-14		0.1487	[0.11-0.19] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
754	chr7	22163371	22163372	rs4628175	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	7p15.3	NR	rs4628175-G	0.38	6E-6	(IFNAR2_of_CD8p_T)			Illumina [5084123] (imputed)	N
754	chr7	22187079	22187080	rs11770772	26265699	Karol SE	2015-08-11	Blood	Genetics of glucocorticoid-associated osteonecrosis in children with acute lymphoblastic leukemia.	Glucocorticoid-induced osteonecrosis (age 10 years and older)	230 osteonecrosis cases, 1,238 treated controls	NA	7p15.3	RAPGEF5	rs11770772-?	NR	4E-6				Affymetrix, Illumina [NR] (imputed)	N
754	chr7	22198430	22198431	rs10950894	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	7p15.3	NR	rs10950894-?	NR	1E-6		0.0489	[0.029-0.069] unit increase	Illumina [at least 560000] (imputed)	N
754	chr7	22252635	22252636	rs77619310	34413389	Ruggiero D	2021-08-19	Sci Rep	Genetics of PlGF plasma levels highlights a role of its receptors and supports the link between angiogenesis and immunity.	Placenta growth factor levels	1,600 European ancestry individuals	468 European ancestry individuals	7p15.3		rs77619310-A	0.04	5E-7		0.053	[0.031-0.075] unit increase	Illumina [8281256] (imputed)	N
754	chr7	22259669	22259670	rs1859807	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Staphylococcus A fleurettii abundance in stool	5,959 Finnish ancestry individuals	NA	7p15.3		rs1859807-A	0.280572	2E-8		0.0833491	[0.054-0.112] unit increase	Illumina [7980478] (imputed)	N
754	chr7	22268561	22268562	rs16873183	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,931 Sub-Saharan African ancestry males	NA	7p15.3		rs16873183-G	0.959552	3E-6		0.0321902	[0.019-0.046] unit increase	Illumina [13900000] (imputed)	N
755	chr7	22282351	22282352	rs10243383	30219690	Heinzman JT	2018-09-07	J Affect Disord	GWAS and systems biology analysis of depressive symptoms among smokers from the COPDGene cohort.	Depression in smokers	1,622 European ancestry cases, 391 African American cases, 4,954 European ancestry controls, 2,749 African American controls	NA	7p15.3	RAPGEF5	rs10243383-T	0.626	1E-7	(AA)			Illumina [NR] (imputed)	N
755	chr7	22293116	22293117	rs113432289	30104761	Zhou W	2018-08-13	Nat Genet	Efficiently controlling for case-control imbalance and sample relatedness in large-scale genetic association studies.	Glaucoma	4,462 European ancestry cases, 397,761 European ancestry controls	NA	7p15.3	RAPGEF5	rs113432289-C	1.17E-4	2E-8				Affymetrix [28000000] (imputed)	N
756	chr7	22414645	22414646	rs6943931	26305897	Iyengar SK	2015-08-25	PLoS Genet	Genome-Wide Association and Trans-ethnic Meta-Analysis for Advanced Diabetic Kidney Disease: Family Investigation of Nephropathy and Diabetes (FIND).	Diabetic kidney disease	1,564 African American cases, 369  African American diabetic controls, 1,288 African American non-diabetic controls, 538 American Indian ancestry cases, 319 American Indian ancestry diabetic controls, 342 European ancestry cases, 404 European ancestry diabetic controls, 779 Mexican ancestry cases, 594 Mexican ancestry diabetic controls	950 African American cases, 50 African American diabetic controls, 1,887 African American non-diabetic controls, 471 American Indian ancestry cases, 340 American Indian ancestry diabetic controls, 486 American Indian ancestry non-diabetic controls, 582 European ancestry ancestry cases, 205 European ancestry diabetic controls, 2,568 European ancestry non-diabetic controls	7p15.3	NR	rs6943931-?	0.72	2E-6	(AA, dominant )	1.3333333		Affymetrix [NR]	N
756	chr7	22435473	22435474	rs34349384	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	7p15.3	STEAP1B, RAPGEF5, RNA5SP227, EEF1A1P6	rs34349384-T	NR	3E-6	(sleep offset)	0.2282	[0.13-0.32] unit decrease	Affymetrix [7141204] (imputed)	N
756	chr7	22440869	22440870	rs146418897	32277301	Okuda H	2020-04-10	Clin Exp Nephrol	Genome-wide association study identifies new loci for albuminuria in the Japanese population.	Urinary albumin excretion	7,805 Japanese ancestry individuals	NA	7p15.3	STEAP1B, RAPGEF5	rs146418897-C	0.033	1E-10		36.85	[25.59-48.11] unit increase	Illumina [4962728] (imputed)	N
756	chr7	22450817	22450818	rs2686511	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	7p15.3	NR	rs2686511-T	0.456	5E-9				NR [9056863] (imputed)	N
756	chr7	22463206	22463207	rs3114704	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	7p15.3		rs3114704-A	0.49	4E-11		6.61	z score increase	Affymetrix [9061022] (imputed)	N
756	chr7	22463206	22463207	rs3114704	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	7p15.3		rs3114704-A	0.49	5E-8		5.46	z score increase	Affymetrix [9061022] (imputed)	N
756	chr7	22480829	22480830	rs115495426	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin I concentration	1,606 African American individuals	NA	7p15.3		rs115495426-?	NR	1E-5		0.37	[0.21-0.53] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
756	chr7	22514052	22514053	rs17364464	21546767	Murea M	2011-05-05	Am J Nephrol	Genome-wide association scan for survival on dialysis in African-Americans with type 2 diabetes.	Dialysis-related mortality	610 African American type 2 diabetes cases	NA	7p15.3	RAPGEF5, IL6	rs17364464-?	0.08	4E-6		1.76	[1.38-2.25]	Affymetrix [832357]	N
756	chr7	22536723	22536724	rs4719697	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	7p15.3	NR	rs4719697-?	NR	4E-6				Affymetrix [NR]	N
757	chr7	22601126	22601127	rs17366136	28355232	Ward-Caviness CK	2017-03-29	PLoS One	A genome-wide trans-ethnic interaction study links the PIGR-FCAMR locus to coronary atherosclerosis via interactions between genetic variants and residential exposure to traffic.	Coronary atherosclerosis (increased number of diseased vessels) (traffic exposure interaction)	1,562 European ancestry individuals, 538 African American individuals	NA	7p15.3	intergenic	rs17366136-A	NR	8E-6	(AA)	2.47	[1.66-3.68]	Illumina [at least 756588]	N
757	chr7	22610712	22610713	rs1012177	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	7p15.3	NR	rs1012177-?	NR	4E-9				Affymetrix [~ 8270000] (imputed)	N
757	chr7	22620318	22620319	rs2905347	29071344	Zhou H	2017-10-25	JAMA Psychiatry	Genetic Risk Variants Associated With Comorbid Alcohol Dependence and Major Depression.	Major depression and alcohol dependence	3,041 African American individuals, 1,618 European ancestry individuals	1,612 African American individuals, 1,551 European ancestry individuals	7p15.3	intergenic	rs2905347-G	0.439	6E-6	(AA)	0.455	unit increase	Illumina [at least 5086170] (imputed)	N
757	chr7	22621499	22621500	rs984181	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	7p15.3	NR	rs984181-A	0.0159372	3E-9		0.0472336	[0.032-0.063] unit decrease	NR [NR]	N
757	chr7	22623022	22623023	rs117849038	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	7p15.3	NR	rs117849038-C	0.988862	6E-9		0.0597274	[0.04-0.08] unit decrease	NR [NR]	N
757	chr7	22672469	22672470	rs78821961	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	150,068 East Asian ancestry individuals	NA	7p15.3		rs78821961-A	0.09962	3E-8		0.0368252	[0.024-0.05] unit increase	Illumina [13478956] (imputed)	N
757	chr7	22672469	22672470	rs78821961	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	145,648 East Asian ancestry individuals	NA	7p15.3	NR	rs78821961-G	0.885335	5E-12		0.053536	[0.038-0.069] SD units increase	Affymetrix, Illumina [16710488] (imputed)	N
758	chr7	22697175	22697176	rs80085481	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	7p15.3		rs80085481-A	NR	4E-14		0.0479	[0.036-0.06] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
758	chr7	22697175	22697176	rs80085481	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	7p15.3		rs80085481-A	0.100496	4E-14		0.0478726	[0.035-0.06] unit decrease	Illumina [13478928] (imputed)	N
758	chr7	22697175	22697176	rs80085481	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	7p15.3		rs80085481-A	NR	3E-8		0.0367	[0.024-0.05] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
758	chr7	22704625	22704626	rs57375391	26545630	Deming Y	2015-09-25	Neurobiol Aging	A potential endophenotype for Alzheimer's disease: cerebrospinal fluid clusterin.	Cerebrospinal fluid clusterin levels	300 Alzheimer's disease cases, 373 controls	NA	7p15.3	LOC401312	rs57375391-?		2E-6		0.497	[NR] unit decrease	Illumina [5970354] (imputed)	N
758	chr7	22705473	22705474	rs6962836	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	7p15.3	NR	rs6962836-A	0.860718	2E-13		0.0207826	[0.015-0.026] unit decrease	NR [NR]	N
758	chr7	22712456	22712457	rs76401687	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	154,355 East Asian ancestry individuals	NA	7p15.3		rs76401687-A	0.160609	2E-8		0.0259592	[0.017-0.035] unit increase	Illumina [13479091] (imputed)	N
758	chr7	22715090	22715091	rs6976090	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	7p15.3		rs6976090-C	0.295556	3E-13		0.01788141	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
758	chr7	22721588	22721589	rs2961308	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	7p15.3		rs2961308-C	NR	3E-14		0.0253	[0.019-0.032] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
758	chr7	22722903	22722904	rs2961309	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	C-reactive protein levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	7p15.3	LOC401312, LOC541472	rs2961309-?		6E-16		0.0443	[0.034-0.055] unit increase	Illumina [31500000] (imputed)	N
758	chr7	22726740	22726741	rs73683955	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	7p15.3		rs73683955-T	0.160814	2E-8		0.0278634	[0.018-0.038] unit decrease	Illumina [13476299] (imputed)	N
758	chr7	22726740	22726741	rs73683955	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	83,025 East Asian ancestry individuals	NA	7p15.3		rs73683955-T	0.160431	3E-15		0.0504944	[0.038-0.063] unit increase	Illumina [13470202] (imputed)	N
758	chr7	22728271	22728272	rs34929064	29071344	Zhou H	2017-10-25	JAMA Psychiatry	Genetic Risk Variants Associated With Comorbid Alcohol Dependence and Major Depression.	Major depression and alcohol dependence	3,041 African American individuals, 1,618 European ancestry individuals	1,612 African American individuals, 1,551 European ancestry individuals	7p15.3	intergenic	rs34929064-C	0.247	7E-6	(AA)	0.498	unit decrease	Illumina [at least 5086170] (imputed)	N
758	chr7	22732838	22732839	rs2097677	21196492	Okada Y	2010-12-31	Hum Mol Genet	Genome-wide association study for C-reactive protein levels identified pleiotropic associations in the IL6 locus.	C-reactive protein	10,112 Japanese ancestry individuals	2,742 Japanese ancestry individuals	7p15.3	IL6	rs2097677-A	0.19	4E-11		0.101	[0.07-0.13] unit increase	Illumina [477784]	N
758	chr7	22734887	22734888	rs2905343	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p15.3	NR	rs2905343-A	0.18352	2E-11				Affymetrix, Illumina [24588908] (imputed)	N
758	chr7	22735931	22735932	rs79802086	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	C-reactive protein levels	75,391 Japanese ancestry individuals	NA	7p15.3	LOC401312, LOC541472	rs79802086-?	NR	1E-17		0.06015	[0.046-0.074] unit increase novel	Illumina [6108953] (imputed)	N
758	chr7	22736883	22736884	rs76659285	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin	108,054 Japanese ancestry individuals	NA	7p15.3	LOC401312, LOC541472	rs76659285-?	NR	4E-8		0.03178	[0.02-0.043] unit decrease novel	Illumina [6108953] (imputed)	N
758	chr7	22738761	22738762	rs4722166	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	7p15.3	LOC401312, LOC541472	rs4722166-C	0.372978203	6E-6		1.0574074	[1.032065598-1.0833714]	Illumina [10439017] (imputed)	N
758	chr7	22739561	22739562	rs59084784	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	7p15.3	IL6	rs59084784-A	0.32312300000000005	6E-7		0.01674	[0.01-0.023] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
758	chr7	22739561	22739562	rs59084784	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	7p15.3	IL6	rs59084784-A	0.323114	2E-9		0.016559	[0.011-0.022] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
758	chr7	22740311	22740312	rs4722167	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Non-albumin protein levels	98,538 Japanese ancestry individuals	NA	7p15.3	LOC401312, LOC541472	rs4722167-?	NR	6E-20		0.05362	[0.042-0.065] unit increase novel	Illumina [6108953] (imputed)	N
758	chr7	22740311	22740312	rs4722167	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Albumin-globulin ratio	98,626 Japanese ancestry individuals	NA	7p15.3	LOC401312, LOC541472	rs4722167-?	NR	1E-24		0.06006	[0.049-0.072] unit decrease novel	Illumina [6108953] (imputed)	N
758	chr7	22740512	22740513	rs35345753	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	7p15.3		rs35345753-G	NR	1E-17		0.0244	[0.019-0.03] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
758	chr7	22740512	22740513	rs35345753	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p15.3	NR	rs35345753-G	0.179171	2E-26				Affymetrix, Illumina [23472807] (imputed)	N
758	chr7	22740512	22740513	rs35345753	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	7p15.3	NR	rs35345753-G	0.207147	7E-30		0.026515	[0.022-0.031] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
758	chr7	22740984	22740985	rs55671977	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	120,539 East Asian ancestry individuals	NA	7p15.3		rs55671977-G	0.143166	2E-12		0.03798	[0.027-0.048] unit decrease	Illumina [13474682] (imputed)	N
758	chr7	22742055	22742056	rs74702905	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum albumin levels	102,223 Japanese ancestry individuals	NA	7p15.3	LOC401312, LOC541472	rs74702905-?	NR	1E-12		0.0356	[0.026-0.045] unit decrease	Illumina [6108953] (imputed)	N
758	chr7	22743084	22743085	rs151011383	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	7p15.3		rs151011383-A	NR	1E-8		0.0373	[0.025-0.05] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
758	chr7	22743084	22743085	rs151011383	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	150,545 East Asian ancestry individuals	NA	7p15.3		rs151011383-A	0.074212	1E-8		0.0373016	[0.025-0.05] unit decrease	Illumina [13478866] (imputed)	N
758	chr7	22746563	22746564	rs13242809	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	7p15.3		rs13242809-A	NR	3E-15		0.0173	[0.013-0.022] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
758	chr7	22746563	22746564	rs13242809	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	7p15.3		rs13242809-A	NR	3E-34		0.0295	[0.025-0.034] unit decrease	Affymetrix, Illumina [20529698] (imputed)	N
758	chr7	22746563	22746564	rs13242809	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	7p15.3		rs13242809-A	0.274055	3E-23		0.024740987	[0.02-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
758	chr7	22746563	22746564	rs13242809	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	7p15.3	intergenic	rs13242809-A	0.2744	9E-11		0.02629182	[0.018-0.034] unit decrease	Affymetrix [~ 2500000] (imputed)	N
758	chr7	22748105	22748106	rs56874826	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	7p15.3		rs56874826-A	NR	3E-8		0.0169	[0.011-0.023] unit increase	Affymetrix, Illumina [20535842] (imputed)	N
758	chr7	22753674	22753675	rs57561814	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	7p15.3	NR	rs57561814-?	NR	7E-6		0.0728	[0.041-0.105] unit increase	Illumina [at least 560000] (imputed)	N
758	chr7	22754767	22754768	rs7776857	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	7p15.3	NR	rs7776857-T	0.655143	2E-14		0.017971156	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
758	chr7	22754767	22754768	rs7776857	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	7p15.3		rs7776857-T	0.655158	5E-11		0.0154116945	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
758	chr7	22754767	22754768	rs7776857	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p15.3	NR	rs7776857-T	0.673183	3E-20				Affymetrix, Illumina [24649327] (imputed)	N
758	chr7	22754767	22754768	rs7776857	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	7p15.3	NR	rs7776857-T	0.65805	2E-21		0.018545	[0.015-0.022] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
758	chr7	22754767	22754768	rs7776857	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p15.3	NR	rs7776857-T	0.668116	4E-11				Affymetrix, Illumina [23114412] (imputed)	N
758	chr7	22754767	22754768	rs7776857	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	7p15.3	NR	rs7776857-T	0.657131	3E-13		0.014833	[0.011-0.019] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
758	chr7	22754767	22754768	rs7776857	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	7p15.3	TOMM7	rs7776857-?	NR	6E-6	(3-hydroxyphenylacetic acid)	0.17875573	[0.1-0.26] unit decrease	Affymetrix [at least 2500000] (imputed)	N
758	chr7	22756462	22756463	rs10155981	22085899	Chen G	2011-11-16	Eur J Hum Genet	UGT1A1 is a major locus influencing bilirubin levels in African Americans.	Bilirubin levels	619 African American individuals	NA	7p15.3	AC073072.5	rs10155981-T	0.418	2E-7		0.126	[0.079-0.173] unit increase	Affymetrix [808465]	N
758	chr7	22759468	22759469	rs1880241	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	7p15.3	NR	rs1880241-G	NR	5E-10		0.0155	[0.011-0.02] unit increase	Affymetrix [9000000] (imputed)	N
758	chr7	22759468	22759469	rs1880241	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	7p15.3	NR	rs1880241-A	0.506464	2E-31		0.0238533	[0.02-0.028] unit increase	NR [NR]	N
758	chr7	22759468	22759469	rs1880241	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7p15.3		rs1880241-?	NR	7E-8				NR [~ 8900000] (imputed)	N
758	chr7	22759468	22759469	rs1880241	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	up to 92,771 European ancestry males, up to 113,387 European ancestry females	NA	7p15.3	IL6	rs1880241-G	0.48	8E-14		0.028	[0.02-0.036] unit decrease	Affymetrix, Illumina, Perlegen [2437193] (imputed)	N
758	chr7	22759468	22759469	rs1880241	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	148,164 European ancestry individuals	NA	7p15.3	LOC100506178	rs1880241-A	0.52	1E-12	(BMI-adjusted)	0.027	[0.019-0.035] unit increase	Affymetrix, Illumina, Perlegen [10019203] (imputed)	N
758	chr7	22765455	22765456	rs2069827	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	7p15.3	NR	rs2069827-T	NR	3E-11		0.0289	[0.02-0.038] unit increase	Affymetrix [9000000] (imputed)	N
758	chr7	22766220	22766221	rs1800797	34103634	Valette K	2021-06-08	Commun Biol	Prioritization of candidate causal genes for asthma in susceptibility loci derived from UK Biobank.	Asthma	56,167 White-British ancestry cases, 352,255 White-British ancestry controls	NA	7p15.3	RAPGEF5, TOMM7	rs1800797-G	0.580279196997407	2E-9		0.039684065	[0.027-0.053] unit increase	Affymetrix [35186738] (imputed)	N
758	chr7	22766220	22766221	rs1800797	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	7p15.3	IL6, LOC541472	rs1800797-G	0.6	4E-14				NR [> 9500000] (imputed)	N
758	chr7	22766220	22766221	rs1800797	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	7p15.3	IL6/LOC541472	rs1800797-G	0.599008	1E-11		1.0429152	[1.03033495053184-1.0556490989781]	NR [9572556] (imputed)	N
758	chr7	22766220	22766221	rs1800797	31959851	Olafsdottir TA	2020-01-20	Nat Commun	Eighty-eight variants highlight the role of T cell regulation and airway remodeling in asthma pathogenesis.	Asthma	16,247 European ancestry cases, 346,486 European ancestry controls, 52,942 cases, 355,713 controls	NA	7p15.3	IL6, LOC401312, TOMM7, SNORD93, LOC100506178, FAM126A	rs1800797-G	0.58029	3E-10		1.04112	[1.03-1.05]	Affymetrix [32463443] (imputed)	N
758	chr7	22766220	22766221	rs1800797	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	7p15.3	LOC541472	rs1800797-?	NR	8E-6		1.1235955	[1.06-1.19]	Illumina [at least 5000000] (imputed)	N
758	chr7	22766432	22766433	rs7802307	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	7p15.3		rs7802307-A	NR	3E-9		0.0129	[0.0086-0.0172] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
758	chr7	22766644	22766645	rs1800795	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	7p15.3	IL6	rs1800795-T	0.5757	2E-25		0.1818	[0.15-0.22] unit decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
758	chr7	22766644	22766645	rs1800795	26545630	Deming Y	2015-09-25	Neurobiol Aging	A potential endophenotype for Alzheimer's disease: cerebrospinal fluid clusterin.	Cerebrospinal fluid clusterin levels in APOEe4- carriers	123 Alzheimer's disease cases, 270 controls	NA	7p15.3	IL6	rs1800795-?		7E-8		0.375	[NR] unit increase	Illumina [5970354] (imputed)	N
758	chr7	22767432	22767433	rs2069832	32141789	Theriault S	2019-10-15	Circ Genom Precis Med	Genetic Association Analyses Highlight IL6, ALPL, and NAV1 As 3 New Susceptibility Genes Underlying Calcific Aortic Valve Stenosis.	Calcific aortic valve stenosis	5,115 European ancestry cases, 354,072 European ancestry controls	NA	7p15.3	IL6	rs2069832-A	0.428	1E-8		1.16	[1.11-1.21]	Affymetrix, Illumina [8000000] (imputed)	N
758	chr7	22767663	22767664	rs2069833	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	7p15.3	IL6	rs2069833-T	0.5874	2E-19		0.1816	[0.14-0.22] mmHg decrease	Affymetrix [NR] (imputed)	N
758	chr7	22767907	22767908	rs1474348	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	7p15.3		rs1474348-?	NR	1E-30				NR [~ 8900000] (imputed)	N
758	chr7	22768026	22768027	rs2069837	31413261	Deelen J	2019-08-14	Nat Commun	A meta-analysis of genome-wide association studies identifies multiple longevity genes.	Longevity (age >99th survival percentile)	3,484 European ancestry cases, 2,178 East Asian ancestry cases, 25,483 European ancestry controls, 2,299 East Asian ancestry controls	NA	7p15.3	IL6	rs2069837-A	0.91	1E-8		1.1111112	[0.93-1.32]	Illumina [up to 9449311] (imputed)	N
758	chr7	22768026	22768027	rs2069837	31413261	Deelen J	2019-08-14	Nat Commun	A meta-analysis of genome-wide association studies identifies multiple longevity genes.	Longevity (age >90th survival percentile)	11,262 European ancestry cases, 2,178 East Asian ancestry cases, 177 African American cases, 25,483 European ancestry controls, 2,299 East Asian ancestry controls, 211 African American controls.	NA	7p15.3	IL6	rs2069837-A	0.92	5E-8		1.1111112	[1.01-1.22]	Affymetrix, Illumina [up to 10786384] (imputed)	N
758	chr7	22768026	22768027	rs2069837	26912274	Zeng Y	2016-02-25	Sci Rep	Novel loci and pathways significantly associated with longevity.	Longevity	2,178 Han Chinese ancestry centenarian cases, 2,299 Han Chinese ancestry middle-age controls	NA	7p15.3	IL6	rs2069837-A	NR	2E-9		1.6393442	[NR]	Illumina [5595657] (imputed)	N
758	chr7	22768026	22768027	rs2069837	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	7p15.3	IL6	rs2069837-?	0.91	7E-9		2.0833335	[NR]	Illumina [up to 547389]	N
758	chr7	22768026	22768027	rs2069837	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	7p15.3	IL6	rs2069837-?	0.81	2E-7	(Turkish)	1.9607843	[1.52-2.56]	Illumina [up to 547389]	N
758	chr7	22768218	22768219	rs1524107	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	7p15.3	NR	rs1524107-T	NR	9E-15		0.0469	[0.035-0.059] unit decrease	Affymetrix [9000000] (imputed)	N
758	chr7	22768218	22768219	rs1524107	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	7p15.3	NR	rs1524107-T	NR	7E-20		0.0528	[0.041-0.064] unit decrease	Affymetrix [9000000] (imputed)	N
758	chr7	22771295	22771296	rs13306436	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	124,341 East Asian ancestry individuals	NA	7p15.3		rs13306436-A	0.041696	4E-8		0.0559658	[0.036-0.076] unit decrease	Illumina [13476323] (imputed)	N
758	chr7	22772259	22772260	rs2069852	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	7p15.3	IL6	rs2069852-G	NR	8E-7		1.1173	NR	Affymetrix, Illumina [8278136] (imputed)	N
758	chr7	22774436	22774437	rs7787893	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	7p15.3		rs7787893-?	NR	8E-16				NR [~ 8900000] (imputed)	N
758	chr7	22775449	22775450	rs34880821	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (childhood onset)	9,433 British ancestry cases, 318,237 British ancestry controls	NA	7p15.3	IL6, TOMM7	rs34880821-A	0.283	5E-10		1.106	[1.071-1.141]	Affymetrix [10894596] (imputed)	N
758	chr7	22775449	22775450	rs34880821	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (age of onset)	37,846 British ancestry individuals	NA	7p15.3	IL6, TOMM7	rs34880821-A	0.283	8E-6		0.667	[0.37-0.96] unit decrease	Affymetrix [10894596] (imputed)	N
758	chr7	22780321	22780322	rs6954667	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	7p15.3	NR	rs6954667-?	NR	7E-9				Affymetrix [~ 8270000] (imputed)	N
758	chr7	22780321	22780322	rs6954667	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	7p15.3	IL6, TOMM7	rs6954667-?	NR	3E-8		1.045	[1.03-1.06]	Affymetrix [9000000] (imputed)	N
758	chr7	22780321	22780322	rs6954667	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	7p15.3	IL6, TOMM7	rs6954667-A	NR	3E-6		1.035	[1.02-1.05]	Affymetrix [9000000] (imputed)	N
758	chr7	22784486	22784512	rs36229146	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	7p15.3		rs36229146-T	NR	3E-23		0.0179	[0.014-0.021] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
758	chr7	22784486	22784512	rs36229146	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	7p15.3	NR	rs36229146-T	NR	4E-9		0.0145	[0.0096-0.0194] unit decrease	Affymetrix [9000000] (imputed)	N
758	chr7	22784486	22784512	rs36229146	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	7p15.3	AC073072.6	rs36229146-T	0.599127	2E-26		0.02411544	[0.02-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
758	chr7	22784486	22784512	rs36229146	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	7p15.3	AC073072.6	rs36229146-T	0.599103	2E-38		0.029289588	[0.025-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
758	chr7	22784486	22784512	rs36229146	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	7p15.3	AC073072.6	rs36229146-T	0.5984	6E-17		0.03058431	[0.023-0.038] unit decrease	Affymetrix [~ 2500000] (imputed)	N
758	chr7	22784486	22784512	rs36229146	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	7p15.3	AC073072.6	rs36229146-T	0.5983	6E-9		0.02129884	[0.014-0.028] unit increase	Affymetrix [~ 2500000] (imputed)	N
758	chr7	22784486	22784512	rs36229146	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	7p15.3	AC073072.6	rs36229146-T	0.5984	9E-13		0.02604623	[0.019-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
758	chr7	22784486	22784512	rs36229146	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	7p15.3	AC073072.6	rs36229146-T	0.5983	4E-10		0.02287402	[0.016-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
758	chr7	22784486	22784512	rs36229146	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	7p15.3	AC073072.6	rs36229146-T	0.5984	9E-18		0.03132745	[0.024-0.038] unit decrease	Affymetrix [~ 2500000] (imputed)	N
758	chr7	22785716	22785717	rs4722171	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	7p15.3		rs4722171-A	0.409	4E-13				Affymetrix [10369434] (imputed)	N
758	chr7	22785716	22785717	rs4722171	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	7p15.3	NR	rs4722171-G	0.592101	2E-41		0.027253	[0.023-0.031] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
758	chr7	22786531	22786532	rs4722172	34601942	van Zuydam NR	2021-10-04	Circ Genom Precis Med	Genome-Wide Association Study of Peripheral Artery Disease.	Peripheral artery disease	12,086 European ancestry cases, 449,548 European ancestry controls	31,307 cases, 211,753 controls, 3,164 East Asian ancestry cases, 20,134 East Asian ancestry controls	7p15.3		rs4722172-G	0.78	9E-9		1.08	[1.05-1.1]	Affymetrix, Illumina [NR] (imputed)	N
758	chr7	22786531	22786532	rs4722172	31285632	Klarin D	2019-07-08	Nat Med	Genome-wide association study of peripheral artery disease in the Million Veteran Program.	Peripheral artery disease	24,009 European ancestry cases, 150,983 European ancestry controls, 5,373 African ancestry cases, 42,485 African ancestry controls, 1,925 Hispanic cases, 18,285 Hispanic controls	5,117 European ancestry cases, 389,291 European ancestry controls	7p15.3	IL6	rs4722172-G	0.1957	4E-11		1.08	[1.05-1.10]	Affymetrix [at least 20323458] (imputed)	N
758	chr7	22792317	22792318	rs58507040	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	7p15.3	IL6	rs58507040-C	0.287494	1E-9		1.0428697	[1.03-1.06]	Affymetrix [8274727] (imputed)	N
758	chr7	22793634	22793635	rs142172305	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	7p15.3	Intergenic	rs142172305-T	NR	4E-6		0.101375	[0.058-0.144] unit increase	Illumina [13520550] (imputed)	N
758	chr7	22796742	22796743	rs6461667	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p15.3	NR	rs6461667-G	0.66281	1E-38				Affymetrix, Illumina [19872809] (imputed)	N
758	chr7	22798264	22798265	rs7808457	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	7p15.3	IL6	rs7808457-A	0.5857289999999999	2E-9		0.018634	[0.013-0.025] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
759	chr7	22809489	22809490	rs6946509	23603761	Hinks A	2013-04-21	Nat Genet	Dense genotyping of immune-related disease regions identifies 14 new susceptibility loci for juvenile idiopathic arthritis.	Juvenile idiopathic arthritis (oligoarticular or rheumatoid factor-negative polyarticular)	2,816 European ancestry cases, 13,056 European ancestry controls	NA	7p15.3	IL6	rs6946509-T	0.45	3E-8	(additive model)	1.19	[1.12-1.26]	Illumina [123003]	N
759	chr7	22853520	22853521	rs71520386	26561523	de Vries PS	2015-11-10	Hum Mol Genet	A meta-analysis of 120 246 individuals identifies 18 new loci for fibrinogen concentration.	Fibrinogen levels	120,246 European ancestry individuals	NA	7p15.3	TOMM7	rs71520386-T	0.2	5E-9		0.0066	NR unit increase	Affymetrix, Illumina [~ 10700000] (imputed)	N
759	chr7	22856605	22856606	rs2286503	23969696	Sabater-Lleal M	2013-08-22	Circulation	Multiethnic meta-analysis of genome-wide association studies in >100 000 subjects identifies 23 fibrinogen-associated Loci but no strong evidence of a causal association between circulating fibrinogen and cardiovascular disease.	Fibrinogen	91,323 European ancestry individuals	8,423 African American individuals, 1,447 Hispanic individuals	7p15.3	TOMM7, IL6	rs2286503-T	0.36	7E-9	(EA)	0.006	[0.004-0.008] unit decrease	Affymetrix, Illumina [2515567] (imputed)	N
759	chr7	22859258	22859259	rs8180849	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	7p15.3	NR	rs8180849-A	NR	1E-10		0.0226	[0.016-0.029] unit decrease	Affymetrix [9000000] (imputed)	N
759	chr7	22861037	22861038	rs4719715	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (hospitalized covid vs population)	613 European ancestry cases, 680,416 European ancestry controls, 140 Hispanic or Latin American cases, 94,327 Hispanic or Latin American controls, 49 Black or African American cases, 22,410 Black or African American controls	NA	7p15.3		rs4719715-?	NR	6E-6		0.8562623	[0.49-1.23] unit increase	Illumina [9875426] (imputed)	N
759	chr7	22874046	22874047	rs1029738	28107422	de Vries PS	2017-01-20	PLoS One	Comparison of HapMap and 1000 Genomes Reference Panels in a Large-Scale Genome-Wide Association Study.	Fibrinogen levels	91,953 European ancestry individuals (imputed to HapMap)		7p15.3	TOMM7, SNORD93	rs1029738-?	NR	3E-7		0.0057	unit increase	Affymetrix, Illumina [2749429] (imputed)	N
759	chr7	22882290	22882291	rs61542988	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	7p15.3	NR	rs61542988-C	0.753952	4E-30		0.0259027	[0.021-0.03] unit increase	NR [NR]	N
759	chr7	22882290	22882291	rs61542988	28107422	de Vries PS	2017-01-20	PLoS One	Comparison of HapMap and 1000 Genomes Reference Panels in a Large-Scale Genome-Wide Association Study.	Fibrinogen levels	91,953 European ancestry individuals (imputed to 1000 Genomes)		7p15.3	TOMM7, SNORD93	rs61542988-?	NR	3E-8		0.0065	unit increase	Affymetrix, Illumina [10883314] (imputed)	N
759	chr7	22893794	22893795	rs11983782	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	7p15.3		rs11983782-G	NR	1E-9		0.0129	[0.0088-0.017] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
759	chr7	22893794	22893795	rs11983782	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	7p15.3	NR	rs11983782-G	NR	6E-11		0.0159	[0.011-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
759	chr7	22919807	22919808	rs6950451	25475840	Colodro-Conde L	2014-12-05	Twin Res Hum Genet	A twin study of breastfeeding with a preliminary genome-wide association scan.	Breastfeeding duration	1,521 mothers from 1,073 families	NA	7p15.3	FAM126A, SNORD93	rs6950451-?	NR	1E-7		0.259	[0.16-0.36] unit decrease	Illumina [6590000] (imputed)	N
759	chr7	22926021	22926022	rs137909566	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GALNT10	5,363 Icelandic ancestry individuals	NA	7p15.3		rs137909566-C	0.01096	2E-12		0.134412	[0.097-0.172] unit increase	Illumina [7506463] (imputed)	N
760	chr7	22970873	22970874	rs202224378	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	7p15.3	NR	rs202224378-?	NR	4E-12		15744.726	NR unit decrease	Illumina [2379855]	N
760	chr7	22985009	22985010	rs2286492	21254220	Jiang Y	2011-02-01	Genet Epidemiol	Propensity score-based nonparametric test revealing genetic variants underlying bipolar disorder.	Bipolar disorder	1,868 European ancestry cases, 2,938 European ancestry controls	NA	7p15.3	NR	rs2286492-?	NR	8E-6	(recessive)			Affymetrix [NR]	N
760	chr7	22985960	22985961	rs2286490	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	7p15.3	NR	rs2286490-?	NR	2E-11				Affymetrix [NR]	N
760	chr7	22994185	22994186	rs73082373	24024966	Teumer A	2013-08-14	J Clin Periodontol	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (Mean PAL)	up to 4,032 European ancestry individuals	NA	7p15.3	FAM126A	rs73082373-T	0.95	6E-6	(Age 20-60 years)	0.126	[0.071-0.181] unit decrease	Affymetrix, Illumina [up to 17585496] (imputed)	N
761	chr7	23094422	23094422	rs571613770	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	7p15.3	NR	rs571613770-?	NR	4E-8	(left pars orbitalis)			NR [9227495] (imputed)	N
761	chr7	23109315	23109316	rs112330055	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7p15.3		rs112330055-?	NR	9E-18				NR [~ 8900000] (imputed)	N
761	chr7	23123876	23123877	rs10256359	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Parkinson's disease	9,619 European ancestry cases, 324,522 European ancestry controls	NA	7p15.3	FAM126A, KLHL7	rs10256359-?	NR	2E-12		1.1273957	[1.09-1.17]	Illumina [12438219] (imputed)	N
761	chr7	23134909	23134910	rs78324273	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	7p15.3	NR	rs78324273-C	0.008	9E-15	(Transmembrane glycoprotein NMB, GPNMB.5080.131.3)	1.23	[0.92-1.54] unit increase	Affymetrix [10572788] (imputed)	N
761	chr7	23134909	23134910	rs78324273	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	7p15.3	NR	rs78324273-C	0.008	2E-14	(Transmembrane glycoprotein NMB, GPNMB.8240.207.3)	1.21	[0.9-1.52] unit increase	Affymetrix [10572788] (imputed)	N
761	chr7	23188935	23188936	rs28624974	32201043	Smeland OB	2020-02-08	Biol Psychiatry	Genome-wide Association Analysis of Parkinson's Disease and Schizophrenia Reveals Shared Genetic Architecture and Identifies Novel Risk Loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	NA	7p15.3	KLHL7	rs28624974-T		8E-12		0.1016	[0.072-0.131] unit increase	Illumina [NR]	N
761	chr7	23194400	23194401	rs73086142	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GPNMB	5,365 Icelandic ancestry individuals	NA	7p15.3		rs73086142-A	0.05401	5E-34		0.503727	[0.42-0.58] unit increase	Illumina [7506463] (imputed)	N
762	chr7	23208042	23208043	rs11770879	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	7p15.3	NR	rs11770879-A	NR	4E-11		0.0324	[0.023-0.042] unit decrease	Affymetrix [9000000] (imputed)	N
762	chr7	23210128	23210129	rs858267	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	7p15.3	GPNMB, KLHL7	rs858267-T	0.02309237	8E-13	(EA, Transmembrane glycoprotein NMB)	1.033	[0.75-1.31] unit increase	Affymetrix [509946]	N
762	chr7	23220638	23220639	rs858249	25584925	Chen W	2015-01-13	Ann Am Thorac Soc	A genome-wide association study of chronic obstructive pulmonary disease in Hispanics.	Chronic obstructive pulmonary disease	94 Costa Rican founder population smoker cases, 412 Costa Rican founder population smoker controls, 63 Hispanic ancestry cases, 619 Hispanic ancestry controls	47 Hispanic ancestry smoker cases, 290 Hispanic ancestry smoker controls	7p15.3	KLHL7, NUPL2	rs858249-A	0.91	6E-8		1.1	[NR] unit decrease	Affymetrix, Illumina [~ 2600000] (imputed)	N
762	chr7	23241736	23241737	rs76350761	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	7p15.3	GPNMB	rs76350761-A	0.94109375	4E-11	(GPNMB, 8606_39_3)	0.34399146	[0.24-0.45] unit increase	Illumina [> 1000000] (imputed)	N
762	chr7	23248207	23248208	rs117398992	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GPNMB	5,339 Icelandic ancestry individuals	NA	7p15.3		rs117398992-C	0.01061	1E-20		0.726345	[0.57-0.88] unit decrease	Illumina [7506463] (imputed)	N
762	chr7	23250362	23250363	rs860818	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Initial pursuit acceleration	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	7p15.3	NUPL2	rs860818-T	0.1879	5E-6	(African)			Illumina [4404269] (imputed)	N
762	chr7	23250362	23250363	rs860818	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Initial pursuit acceleration	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	7p15.3	NUPL2	rs860818-T	0.09769	7E-6				Illumina [4404269] (imputed)	N
762	chr7	23264283	23264284	rs6461703	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7p15.3	GPNMB	rs6461703-T	0.577696	3E-9	(144 ms)	0.0343114	[0.023-0.045] unit decrease	Affymetrix [10000000] (imputed)	N
762	chr7	23264283	23264284	rs6461703	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7p15.3	GPNMB	rs6461703-T	0.577696	2E-8	(146 ms)	0.0325464	[0.022-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
762	chr7	23284236	23284237	rs858240	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	7p15.3	GPNMB	rs858240-A	0.6328125	4E-23	(GPNMB, 5080_131_3)	0.25078917	[0.2-0.3] unit increase	Illumina [> 1000000] (imputed)	N
762	chr7	23284236	23284237	rs858240	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	7p15.3	GPNMB	rs858240-A	0.6328125	1E-19	(GPNMB, 8240_207_3)	0.2308316	[0.18-0.28] unit increase	Illumina [> 1000000] (imputed)	N
762	chr7	23286314	23286315	rs858239	28031287	Sasayama D	2016-11-26	Hum Mol Genet	Genome-wide quantitative trait loci mapping of the human cerebrospinal fluid proteome.	Cerebrospinal fluid biomarker levels	133 Japanese ancestry individuals.	NA	7p15.3	NR	rs858239-?	NR	2E-13	(Transmembrane glycoprotein NMB)			Illumina [514227]	N
762	chr7	23290986	23290987	rs10262243	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GPNMB	5,368 Icelandic ancestry individuals	NA	7p15.3		rs10262243-A	0.3406	6E-32		0.232494	[0.19-0.27] unit decrease	Illumina [7506463] (imputed)	N
762	chr7	23290986	23290987	rs10262243	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GPNMB	5,365 Icelandic ancestry individuals	NA	7p15.3		rs10262243-A	0.3406	3E-27		0.212001	[0.17-0.25] unit decrease	Illumina [7506463] (imputed)	N
762	chr7	23290986	23290987	rs10262243	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	7p15.3	GPNMB	rs10262243-A	0.379	6E-17	(Transmembrane glycoprotein NMB, GPNMB.8240.207.3)	0.21	[0.15-0.27] unit decrease	Affymetrix [10572788] (imputed)	N
762	chr7	23290986	23290987	rs10262243	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	7p15.3	GPNMB	rs10262243-A	0.379	4E-19	(Transmembrane glycoprotein NMB, GPNMB.5080.131.3)	0.22	[0.16-0.28] unit decrease	Affymetrix [10572788] (imputed)	N
762	chr7	23292807	23292808	rs1881203	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GPNMB	5,339 Icelandic ancestry individuals	NA	7p15.3		rs1881203-C	0.3407	7E-37		0.214888	[0.18-0.25] unit decrease	Illumina [7506463] (imputed)	N
762	chr7	23293745	23293746	rs199347	28892059	Chang D	2017-09-11	Nat Genet	A meta-analysis of genome-wide association studies identifies 17 new Parkinson's disease risk loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	5,851 European ancestry cases, 5,866 European ancestry controls	7p15.3	KLHL7, NUPL2, GPNMB	rs199347-A	0.588	4E-18		1.098901	[1.08-1.12]	Illumina [11933700] (imputed)	N
762	chr7	23293745	23293746	rs199347	25064009	Nalls MA	2014-07-27	Nat Genet	Large-scale meta-analysis of genome-wide association data identifies six new risk loci for Parkinson's disease.	Parkinson's disease	13,708 European ancestry cases, 95,282 European ancestry controls	5,353 European ancestry cases, 5,551 European ancestry controls	7p15.3	GPNMB	rs199347-A	0.59	1E-12		1.11	[1.08-1.14]	Illumina [7893274] (imputed)	N
762	chr7	23294871	23294872	rs28458177	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	7p15.3	GPNMB	rs28458177-G	0.65828125	5E-24	(GPNMB, 8289_8_3)	0.26498502	[0.21-0.32] unit increase	Illumina [> 1000000] (imputed)	N
762	chr7	23300048	23300049	rs199351	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	7p15.3	GPNMB	rs199351-A	0.5939	5E-26		0.1016	[0.083-0.12] unit increase	NR [7784415] (imputed)	N
762	chr7	23303700	23303701	rs10250602	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	7p15.3	GPNMB	rs10250602-C	0.366	3E-14	(Transmembrane glycoprotein NMB, GPNMB.8289.8.3)	0.19	[0.13-0.25] unit decrease	Affymetrix [10572788] (imputed)	N
762	chr7	23306140	23306141	rs75801644	28881265	Sobalska-Kwapis M	2017-09-01	Eur J Obstet Gynecol Reprod Biol	New variants near RHOJ and C2, HLA-DRA region and susceptibility to endometriosis in the Polish population-The genome-wide association study.	Endometriosis	171 European ancestry cases, 2,934 European ancestry controls	NA	7p15.3	NR	rs75801644-A	0.01823	8E-10		3.882	[2.44-6.176]	Illumina [274400]	N
762	chr7	23313170	23313171	rs2268748	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	7p15.3	GPNMB	rs2268748-C	0.041	1E-28	(Transmembrane glycoprotein NMB, GPNMB.8606.39.3)	0.69	[0.57-0.81] unit increase	Affymetrix [10572788] (imputed)	N
762	chr7	23314546	23314547	rs5850	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	7p15.3	GPNMB	rs5850-T	0.3930723	8E-14	(EA, Transmembrane glycoprotein NMB)	0.3369	[0.25-0.42] unit decrease	Affymetrix [509946]	N
762	chr7	23329601	23329602	rs111991936	28334935	Raffield LM	2017-05-15	Hum Mol Genet	Genome-wide association study of iron traits and relation to diabetes in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL): potential genomic intersection of iron and glucose regulation?	Iron status biomarkers (transferrin saturation)	12,589 Hispanic/Latino individuals	NA	7p15.3	GPNMB, MALSU1	rs111991936-G	NR	6E-7		0.403	[0.24-0.56] unit increase	Illumina [27700000] (imputed)	N
763	chr7	23351079	23351080	rs3087888	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7p15.3		rs3087888-?	NR	4E-17				NR [~ 8900000] (imputed)	N
763	chr7	23353513	23353514	rs17796841	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	7p15.3	NR	rs17796841-C	NR	2E-12		0.0345	[0.025-0.044] unit decrease	Affymetrix [9000000] (imputed)	N
763	chr7	23360566	23360573	rs70966008	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Systolic blood pressure (long-term average)	5,304 African American individuals, 13,137 European ancestry individuals, 1,317 Hispanic individuals, 1,439 admixed individuals, 703 Chinese ancestry individuals	6,500 African American individuals, 2,451 European ancestry individuals, 2,869 Hispanic individuals	7p15.3	NR	rs70966008-A	0.9257	9E-7		4.7574	[2.86-6.66] mmHg decrease	Affymetrix, Illumina [NR] (imputed)	N
763	chr7	23360566	23360573	rs70966008	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Systolic blood pressure (long-term average)	5,304 African American individuals	6,500 African American individuals	7p15.3	NR	rs70966008-A	0.9257	9E-7		4.7574	[2.86-6.66] mmHg decrease	Affymetrix, Illumina [NR] (imputed)	N
763	chr7	23397028	23397029	rs78503057	34162658	Quinn MC	2021-06-23	Cancer Epidemiol Biomarkers Prev	Identification of a locus near ULK1 associated with progression-free survival in ovarian cancer.	Progression free survival in serous epithelial ovarian cancer treated with carboplatin and paclitaxel	1,751 European ancestry individuals	NA	7p15.3	NR	rs78503057-A		1E-6		0.6555	[0.39-0.92] unit decrease	Illumina [12759548] (imputed)	N
763	chr7	23420766	23420767	rs375092	23903073	Kim HN	2013-08-01	J Hum Genet	Genome-wide association study of the five-factor model of personality in young Korean women.	Personality dimensions	1,089 Korean ancestry females	2,090 Korean ancestry individuals	7p15.3	IGF2BP3	rs375092-C		5E-6	(Conscientiousness)	0.02	[-0.078-0.118] unit increase	Illumina [2053685] (imputed)	N
763	chr7	23434605	23434606	rs78840640	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	7p15.3	IGF2BP3	rs78840640-G	0.022	3E-6		1.11	[1.06-1.16]	Affymetrix, Illumina [~ 27000000] (imputed)	N
763	chr7	23438000	23438001	rs75425234	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	7p15.3	IGF2BP3	rs75425234-C	NR	2E-9		0.0271874	[0.018-0.036] unit increase	Affymetrix [323123] (imputed)	N
763	chr7	23440056	23440057	rs75693095	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	7p15.3	NR	rs75693095-G	0.9789	1E-11		0.112	[0.079-0.145] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
764	chr7	23479012	23479013	rs11765649	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	7p15.3	NR	rs11765649-C	0.259873	2E-10		0.014348	[0.0099-0.0188] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
764	chr7	23479012	23479013	rs11765649	27680694	Horikoshi M	2016-10-13	Nature	Genome-wide associations for birth weight and correlations with adult disease.	Birth weight	133,903 European ancestry individuals, 6,635 African American individuals, 420 Turkish ancestry individuals, 365 Moroccan ancestry individuals, 395 Surinamese ancestry individuals, 840 Chinese ancestry individuals.	9,799 European ancestry individuals, 1,449 Filipino ancestry individuals.	7p15.3	IGF2BP3	rs11765649-T	0.76	1E-9		0.0258	[0.018-0.034] unit increase	Affymetrix, Illumina [at least 22434434] (imputed)	N
764	chr7	23480131	23480132	rs11769806	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	7p15.3	IGF2BP3	rs11769806-T	NR	6E-13		0.0257184	[0.019-0.033] unit decrease	Affymetrix [323123] (imputed)	N
764	chr7	23480131	23480132	rs11769806	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	7p15.3	NR	rs11769806-?	NR	6E-6		4.526	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
764	chr7	23480131	23480132	rs11769806	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	7p15.3	IGF2BP3	rs11769806-A	0.758	4E-6		0.0368	[0.021-0.052] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
764	chr7	23480466	23480467	rs11763760	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	7p15.3	NR	rs11763760-C	0.797056939029818	2E-6	(IGP54)	0.1815	[0.11-0.26] unit decrease	Illumina [~ 2500000] (imputed)	N
764	chr7	23482684	23482685	rs6957923	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	7p15.3	IGF2BP3	rs6957923-G	0.63	5E-10		1.14	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
764	chr7	23493612	23493613	rs112316332	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	7p15.3	NR	rs112316332-?	NR	3E-8		1.0751879	[1.05-1.1]	Affymetrix, Illumina [12447948] (imputed)	N
764	chr7	23502973	23502974	rs12534093	31681408	Yang XL	2019-10-11	Front Genet	Three Novel Loci for Infant Head Circumference Identified by a Joint Association Analysis.	Infant head circumference (MTAG)	up to 182,902 European ancestry individuals	NA	7p15.3	NR	rs12534093-A	0.2287	2E-8		0.07455529	[0.049-0.101] z score decrease	NR [1977400] (imputed)	N
764	chr7	23502973	23502974	rs12534093	31681408	Yang XL	2019-10-11	Front Genet	Three Novel Loci for Infant Head Circumference Identified by a Joint Association Analysis.	Birth weight (MTAG)	up to 182,902 European ancestry individuals	NA	7p15.3	NR	rs12534093-A	0.24	7E-10		0.027538372	[0.019-0.036] unit decrease	NR [1977400] (imputed)	N
764	chr7	23502973	23502974	rs12534093	31681408	Yang XL	2019-10-11	Front Genet	Three Novel Loci for Infant Head Circumference Identified by a Joint Association Analysis.	Birth length (MTAG)	up to 182,902 European ancestry individuals	NA	7p15.3	NR	rs12534093-A	0.219	1E-9		0.04476021	[0.03-0.059] unit decrease	NR [1977400] (imputed)	N
764	chr7	23502973	23502974	rs12534093	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	7p15.3	NR	rs12534093-?	NR	7E-6		0.03706226	[0.021-0.053] unit decrease	Illumina [34656550] (imputed)	N
764	chr7	23502973	23502974	rs12534093	31097437	Plotnikov D	2019-05-16	Br J Ophthalmol	Association between birth weight and refractive error in adulthood: a Mendelian randomisation study.	Birth weight	188,039 European ancestry individuals	NA	7p15.3	NR	rs12534093-A	0.24	2E-10		0.024	[0.016-0.032] z score decrease	Affymetrix [up to 10400000] (imputed)	N
764	chr7	23502973	23502974	rs12534093	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7p15.3		rs12534093-?	NR	8E-81				NR [~ 8900000] (imputed)	N
764	chr7	23502973	23502974	rs12534093	25281659	van der Valk RJ	2014-10-03	Hum Mol Genet	A novel common variant in DCST2 is associated with length in early life and height in adulthood.	Infant length	28,238 European ancestry individuals	NA	7p15.3	IGF2BP3	rs12534093-A	0.221	8E-8		0.064	[0.040-0.088] unit decrease	Affymetrix, Illumina [2193675] (imputed)	N
764	chr7	23502973	23502974	rs12534093	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	7p15.3	IGF2BP3	rs12534093-A	0.22	2E-14		0.034	[NR] unit decrease	Affymetrix, Illumina [2834208] (imputed)	N
764	chr7	23503753	23503754	rs10950947	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	7p15.3	NR	rs10950947-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
764	chr7	23508740	23508744	rs36037612	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	7p15.3		rs36037612-A	NR	1E-59		0.0301	[0.027-0.034] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
764	chr7	23509294	23509295	rs118003225	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	7p15.3		rs118003225-?	NR	2E-17				NR [~ 8900000] (imputed)	N
764	chr7	23512895	23512896	rs4279506	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	7p15.3		rs4279506-C	NR	1E-8		0.0136	[0.0089-0.0183] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
764	chr7	23512895	23512896	rs4279506	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	7p15.3	NR	rs4279506-C	NR	2E-9		0.0152	[0.01-0.02] unit decrease	Affymetrix [9000000] (imputed)	N
764	chr7	23512895	23512896	rs4279506	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	7p15.3	IGF2BP3	rs4279506-G	0.6102	5E-8		1.06	[1.04-1.08]	Affymetrix, Illumina [~ 27000000] (imputed)	N
764	chr7	23513092	23513093	rs34776209	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	7p15.3		rs34776209-T	NR	1E-9		0.0143	[0.0098-0.0188] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
764	chr7	23513092	23513093	rs34776209	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	7p15.3		rs34776209-T	NR	8E-10		0.0168	[0.012-0.022] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
764	chr7	23513092	23513093	rs34776209	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	7p15.3	IGF2BP3	rs34776209-T	0.2475	2E-47		0.0317	[0.027-0.036] unit decrease	Affymetrix [18391927] (imputed)	N
764	chr7	23513092	23513093	rs34776209	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	7p15.3	IGF2BP3	rs34776209-T	0.247644	3E-10		0.016243106	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
764	chr7	23513092	23513093	rs34776209	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	7p15.3	IGF2BP3	rs34776209-C	0.752372	8E-9		0.020983	[0.014-0.028] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
764	chr7	23513092	23513093	rs34776209	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	7p15.3	IGF2BP3	rs34776209-C	0.755246	9E-15		0.023223	[0.017-0.029] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
764	chr7	23513092	23513093	rs34776209	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	7p15.3		rs34776209-?	NR	1E-14				NR [~ 8900000] (imputed)	N
764	chr7	23513092	23513093	rs34776209	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	7p15.3	NR	rs34776209-?	NR	6E-11		0.16711	[0.12-0.22] unit decrease	Affymetrix [7794483] (imputed)	N
764	chr7	23513092	23513093	rs34776209	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	7p15.3	NR	rs34776209-?	NR	1E-6	(male)	0.19791	[0.12-0.28] unit decrease	Affymetrix [7794483] (imputed)	N
764	chr7	23517467	23517468	rs6967145	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	7p15.3	AC079780.3	rs6967145-C	NR	5E-15		0.0243945	[0.018-0.031] unit decrease	Affymetrix [323123] (imputed)	N
764	chr7	23519259	23519260	rs10950949	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	7p15.3	AC079780.3	rs10950949-C	NR	6E-9		0.0181959	[0.012-0.024] unit decrease	Affymetrix [321114] (imputed)	N
764	chr7	23519259	23519260	rs10950949	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	7p15.3	IGF2BP3	rs10950949-A	0.6115	2E-8	(EA)	0.0213	[0.014-0.029] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
764	chr7	23519259	23519260	rs10950949	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	7p15.3	IGF2BP3	rs10950949-A	0.6115	1E-8	(EA, women)	0.0274	[0.018-0.037] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
764	chr7	23520938	23520939	rs117402302	33426524	Ramanan VK	2020-09-26	Brain Commun	Variants in <i>PPP2R2B</i> and <i>IGF2BP3</i> are associated with higher tau deposition.	Tau burden	754 European ancestry individuals	NA	7p15.3	IGF2BP3	rs117402302-A	0.015	4E-8		0.19	NR unit increase	Illumina [6417232] (imputed)	N
764	chr7	23520962	23520963	rs7779665	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	7p15.3	AC079780.3	rs7779665-T	NR	7E-10		0.0175798	[0.012-0.023] unit decrease	Affymetrix [321016] (imputed)	N
764	chr7	23521315	23521316	rs12538407	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	7p15.3	IGF2BP3	rs12538407-A	0.602	4E-26		0.032	[0.026-0.038] unit increase	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
764	chr7	23534979	23534980	rs190576970	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	7p15.3	NR	rs190576970-?	NR	7E-6		0.4913	[0.27-0.71] unit increase	Illumina [at least 560000] (imputed)	N
764	chr7	23559860	23559861	rs2390788	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	7p15.3	TRA2A	rs2390788-C	NR	2E-9		0.0191214	[0.013-0.025] unit increase	Affymetrix [323123] (imputed)	N
764	chr7	23567211	23567212	rs10499565	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	7p15.3	TRA2A	rs10499565-C	NR	2E-9		0.0187696	[0.013-0.025] unit decrease	Affymetrix [323123] (imputed)	N
764	chr7	23584495	23584496	rs11767307	34050765	Zhang L	2021-05-29	J Clin Endocrinol Metab	Joint genome-wide association analyses identified 49 novel loci for age at natural menopause.	Age at menopause	181,219 European ancestry individuals, 43,861 East Asian ancestry individuals	NA	7p15.3		rs11767307-C	0.77	4E-9		0.09	unit increase	Illumina [2093892] (imputed)	N
764	chr7	23584495	23584496	rs11767307	34050765	Zhang L	2021-05-29	J Clin Endocrinol Metab	Joint genome-wide association analyses identified 49 novel loci for age at natural menopause.	Age at menopause	181,219 European ancestry individuals	NA	7p15.3		rs11767307-C	0.77	2E-9		0.09	unit increase	Illumina [2398641] (imputed)	N
764	chr7	23587159	23587160	rs11764404	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p15.3	NR	rs11764404-T	0.213816	2E-10				Affymetrix, Illumina [24649327] (imputed)	N
764	chr7	23589185	23589186	rs11773147	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	7p15.3	NR	rs11773147-G	0.268307	1E-12		0.014803	[0.011-0.019] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
765	chr7	23613702	23613703	rs73077108	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	7p15.3		rs73077108-?	NR	2E-9				Affymetrix [NR] (imputed)	N
765	chr7	23614336	23614337	rs142990111	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	7p15.3		rs142990111-?	NR	2E-9				Affymetrix [NR] (imputed)	N
765	chr7	23615628	23615629	rs73077113	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	7p15.3		rs73077113-?	NR	4E-9				Affymetrix [NR] (imputed)	N
765	chr7	23621480	23621481	rs73077122	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	7p15.3		rs73077122-?	NR	4E-9				Affymetrix [NR] (imputed)	N
765	chr7	23622860	23622861	rs150955441	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	7p15.3		rs150955441-?	NR	3E-9				Affymetrix [NR] (imputed)	N
765	chr7	23624474	23624475	rs227932	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	7p15.3	NR	rs227932-G	NR	9E-7		1.0869565	[NR]	Illumina [7158791] (imputed)	N
765	chr7	23625688	23625689	rs61729404	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	7p15.3		rs61729404-?	NR	4E-9				Affymetrix [NR] (imputed)	N
765	chr7	23627286	23627287	rs227934	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	7p15.3	CCDC126	rs227934-T	0.479	7E-29	(Coiled-coil domain-containing protein 126, CCDC126.6388.21.3)	0.27	[0.23-0.31] unit decrease	Affymetrix [10572788] (imputed)	N
765	chr7	23637415	23637416	rs227937	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CCDC126	5,365 Icelandic ancestry individuals	NA	7p15.3		rs227937-C	0.4867	1E-37		0.244641	[0.21-0.28] unit decrease	Illumina [7506463] (imputed)	N
765	chr7	23646316	23646317	rs227917	29206233	Shendre A	2017-12-04	PLoS One	Genome-wide admixture and association study of subclinical atherosclerosis in the Women's Interagency HIV Study (WIHS).	Common carotid intima-media thickness in HIV negative individuals	288 Black non-Hispanic HIV-negative women	NA	7p15.3	CCDC126	rs227917-C	NR	4E-6		0.03222	[NR] unit increase	Illumina [1124301]	N
765	chr7	23662427	23662428	rs34096175	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7p15.3		rs34096175-?	NR	6E-14				NR [~ 8900000] (imputed)	N
765	chr7	23669811	23669812	rs11771510	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	7p15.3	CCDC126	rs11771510-A	0.27	1E-8		5.68	z-score increase	Affymetrix [4311822] (imputed)	N
766	chr7	23793020	23793021	rs73080988	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	7p15.3		rs73080988-?	NR	8E-9				Affymetrix [NR] (imputed)	N
766	chr7	23806639	23806640	rs16873450	28800603	Arpawong TE	2017-08-11	PLoS One	Genetic variants specific to aging-related verbal memory: Insights from GWASs in a population-based cohort.	Verbal memory performance (residualized delayed recall level)	7,486 European ancestry individuals aged 50 years or older	6,898 European ancestry individuals aged 50 years or older	7p15.3	NR	rs16873450-A	NR	1E-6			unit increase	Illumina [at least 1198956] (imputed)	N
766	chr7	23838995	23838996	rs6979438	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	7p15.3	NR	rs6979438-?	NR	6E-6		0.0082021	[0.0047-0.0118] unit decrease	Affymetrix [805426] (imputed)	N
767	chr7	23856953	23856954	rs2188851	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	7p15.3	Intergenic	rs2188851-T	0.8184	3E-8		0.014	[0.0091-0.0189] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
767	chr7	23882615	23882616	rs74393397	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Oral cavity and pharyngeal cancer	1,223 European ancestry cases, 410,350 European ancestry controls	NA	7p15.3		rs74393397-C	0.010202	6E-7		2.1762786	NR	Affymetrix [7846216] (imputed)	N
767	chr7	23884696	23884697	rs2188848	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	7p15.3	NR	rs2188848-G	0.2109	1E-11		0.0325	[0.023-0.042] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
767	chr7	23911498	23911499	rs2106747	34380480	Liu J	2021-08-12	BMC Med	Genome-wide association study followed by trans-ancestry meta-analysis identify 17 new risk loci for schizophrenia.	Schizophrenia	26,271 East Asian ancestry cases, 40,071 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	7p15.3		rs2106747-A	NR	3E-8		1.05		Illumina [NR] (imputed)	N
767	chr7	23915675	23915676	rs10262624	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	7p15.3	NR	rs10262624-C	NR	2E-6		1.0526316	[NR]	Illumina [7158791] (imputed)	N
767	chr7	23933972	23933973	rs73072461	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	7p15.3	NR	rs73072461-G	0.113	4E-6	(IFNgamma_CXCL10_of_Monocytes)			Illumina [5084123] (imputed)	N
767	chr7	23971534	23971535	rs112920270	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		7p15.3	Intergenic	rs112920270-A	0.008	9E-6	(liability model)	0.45	[0.25-0.65] unit increase	NR [19725427] (imputed)	N
768	chr7	24011450	24011451	rs7786883	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7p15.3		rs7786883-?	NR	2E-9				NR [~ 8900000] (imputed)	N
768	chr7	24066704	24066705	rs28479767	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	7p15.3		rs28479767-?	NR	5E-9				NR [~ 8900000] (imputed)	N
768	chr7	24067992	24067993	rs56382918	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	7p15.3		rs56382918-T	0.7436	1E-12		0.018	[0.014-0.022] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
768	chr7	24085404	24085405	rs10237162	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	7p15.3	STK31, NPY	rs10237162-T	0.7232	2E-18		1.037		Affymetrix [11880941] (imputed)	N
768	chr7	24085404	24085405	rs10237162	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	7p15.3	STK31, NPY	rs10237162-T	0.7232	2E-18		1.0374855		Affymetrix [11880941] (imputed)	N
768	chr7	24085853	24085854	rs7795541	26835600	Hu Y	2016-02-02	Nat Commun	GWAS of 89,283 individuals identifies genetic variants associated with self-reporting of being a morning person.	Morning vs. evening chronotype	38,937 European ancestry morning chronotype individuals, 50,346 European ancestry evening chronotype individuals	NA	7p15.3	NR	rs7795541-?	NR	4E-7				Illumina [7427422] (imputed)	N
768	chr7	24107325	24107326	rs10216322	24554482	Leger PD	2014-02-20	J Neurovirol	Genome-wide association study of peripheral neuropathy with D-drug-containing regimens in AIDS Clinical Trials Group protocol 384.	Response to anti-retroviral therapy (ddI/d4T) in HIV-1 infection (Grade 1 peripheral neuropathy)	40 European ancestry cases, 37 African American cases, 13 Hispanic cases, 85 European ancestry controls, 49 African American controls, 30 Hispanic controls	NA	7p15.3	intergenic	rs10216322-?		8E-6	(EA)	4.776	[NR]	Illumina [936149]	N
769	chr7	24118951	24118952	rs71526045	31006051	Kharazmi M	2019-04-20	Calcif Tissue Int	A Genome-Wide Association Study of Bisphosphonate-Associated Atypical Femoral Fracture.	Atypical femoral fracture in phosphonate treatment	50 European ancestry cases, 1 Chilean ancestry case, 324 European ancestry controls	NA	7p15.3	intergenic	rs71526045-A	0.045	5E-6		5.237	[2.575-10.65]	Illumina [7585874] (imputed)	N
769	chr7	24142927	24142928	rs759869	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	7p15.3		rs759869-?	NR	5E-9				NR [~ 8900000] (imputed)	N
769	chr7	24171926	24171927	rs6952104	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	7p15.3	NR	rs6952104-C	0.467197	9E-11		0.040876344	[0.029-0.053] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
769	chr7	24171926	24171927	rs6952104	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Verbal-numerical reasoning	171,304 British ancestry individuals	NA	7p15.3		rs6952104-?	NR	3E-8				NR [7857346] (imputed)	N
769	chr7	24171926	24171927	rs6952104	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	7p15.3	Intergenic	rs6952104-T	0.5087	6E-11		0.0186	[0.013-0.024] unit increase	Affymetrix, Illumina [10100000] (imputed)	N
769	chr7	24174864	24174865	rs10950995	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	7p15.3	NR	rs10950995-T	NR	2E-8		5.643	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
769	chr7	24174864	24174865	rs10950995	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	7p15.3	NR	rs10950995-?	NR	4E-6		4.637	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
769	chr7	24177190	24177191	rs115064	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	7p15.3	NR	rs115064-T	NR	1E-8		5.72	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
769	chr7	24177872	24177873	rs115062	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	7p15.3	Intergenic	rs115062-T	0.6003	2E-8	(MTAG)	0.0132	[0.0087-0.0177] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
769	chr7	24180462	24180463	rs198716	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	7p15.3	Intergenic	rs198716-A	0.6366	1E-9	(MTAG)	0.0105	[0.0072-0.0138] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
769	chr7	24180462	24180463	rs198716	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	7p15.3	Intergenic	rs198716-A	0.6349	7E-10	(MTAG)	0.0085	[0.0058-0.0112] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
769	chr7	24181054	24181055	rs198712	25256105	Freitag-Wolf S	2014-09-25	J Clin Periodontol	Genome-wide exploration identifies sex-specific genetic effects of alleles upstream NPY to increase the risk of severe periodontitis in men.	Aggressive periodontitis (sex interaction)	329 European ancestry cases, 983 European ancestry controls	382 European ancestry cases, 489 European ancestry controls	7p15.3	NPY	rs198712-?	0.37	4E-6		2.36	[1.63-3.42]	Affymetrix [287224]	N
769	chr7	24191860	24191861	rs198310	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	7p15.3	NPY	rs198310-A	0.786207	3E-11		0.0167804	[0.012-0.022] unit decrease	NR [16516521] (imputed)	N
769	chr7	24224731	24224732	rs156299	25208829	Anderson D	2014-09-11	Genes Immun	Genome-wide association study of vitamin D levels in children: replication in the Western Australian Pregnancy Cohort (Raine) study.	Vitamin D levels	645 European ancestry age 6 individuals, 28 age 6 individuals, 1,073 European ancestry age 14 individuals, 67 age 14 individuals	NA	7p15.3	NPY	rs156299-G	0.43	1E-6	(Age 6)	0.95	[0.93-0.97] unit increase	Illumina [2461244] (imputed)	N
769	chr7	24240164	24240165	rs886448	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	7p15.3	NR	rs886448-?	NR	2E-10				Affymetrix [NR]	N
769	chr7	24240164	24240165	rs886448	23829686	Ding L	2013-07-05	Hum Genomics	Rank-based genome-wide analysis reveals the association of ryanodine receptor-2 gene variants with childhood asthma among human populations.	Asthma (childhood onset)	429 European ancestry affected offspring trios	52 African American affected offspring trios, 46 Hispanic affected offspring trios	7p15.3	intergenic	rs886448-?	NR	7E-8				Affymetrix [786195]	N
770	chr7	24265342	24265343	rs198284	22205395	Tekola Ayele F	2011-12-29	Immunogenetics	Genome-wide associated loci influencing interleukin (IL)-10, IL-1Ra, and IL-6 levels in African Americans.	Interleukin-10 levels	704 African American individuals	425 West African individuals	7p15.3	AC004485.3	rs198284-C	0.04	2E-7	(AA)	0.09	unit increase	Affymetrix [5396780] (imputed)	N
770	chr7	24306761	24306762	rs2722406	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	7p15.3	NPY	rs2722406-C	0.715873	4E-15		0.0121923	[0.0091-0.0152] unit decrease	Affymetrix [12370749]	N
770	chr7	24329836	24329837	rs16131	33562295	Coltell O	2021-02-07	Nutrients	Circulating Adiponectin and Its Association with Metabolic Traits and Type 2 Diabetes: Gene-Diet Interactions Focusing on Selected Gene Variants and at the Genome-Wide Level in High-Cardiovascular Risk Mediterranean Subjects.	Adiponectin levels	606 European ancestry high cardiovascular risk elderly women	NA	7p15.3	NPY	rs16131-C	0.087	7E-6		0.176	[NR] unit decrease	Illumina [625127]	N
770	chr7	24354299	24354300	rs4307239	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		7p15.3	NPY	rs4307239-A	0.541187	2E-8		0.00769099	[0.005-0.0104] unit decrease	Affymetrix [12370749]	N
770	chr7	24354299	24354300	rs4307239	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	7p15.3	NR	rs4307239-?	NR	3E-10				Affymetrix [~ 8270000] (imputed)	N
770	chr7	24354299	24354300	rs4307239	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	7p15.3		rs4307239-?	NR	1E-10				NR [~ 8900000] (imputed)	N
770	chr7	24354299	24354300	rs4307239	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	7p15.3	NA	rs4307239-A	0.5361	1E-11		0.0115	[0.0082-0.0148] unit decrease	NR [~ 27400000] (imputed)	N
770	chr7	24354299	24354300	rs4307239	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	7p15.3	NA	rs4307239-A	0.5361	1E-11		0.0115	[0.0082-0.0148] unit decrease	NR [~ 27400000] (imputed)	N
770	chr7	24378039	24378040	rs2521634	23459936	Divaris K	2013-03-04	Hum Mol Genet	Exploring the genetic basis of chronic periodontitis: a genome-wide association study.	Periodontitis	4,504 European ancestry individuals	656 European ancestry and African American individuals	7p15.3	NPY	rs2521634-?	NR	4E-7	(Severe CPd)	1.49	[1.28-1.73]	Affymetrix [2135236] (imputed)	N
771	chr7	24420403	24420404	rs62450407	32844198	Dumitrescu L	2020-08-01	Brain	Genetic variants and functional pathways associated with resilience to Alzheimer's disease.	Residual cognitive resilience	5,108 European ancestry individuals (unimpaired cognition, mild cognitive impairment or Alzheimer's disease)	NA	7p15.3	NR	rs62450407-?	0.1732	5E-6		0.098631	[0.056-0.141] unit increase	Affymetrix, Illumina [4840740] (imputed)	N
771	chr7	24442485	24442486	rs17149415	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	7p15.3	NR	rs17149415-G	0.2	2E-6	(IFNalpha_CXCL9_of_Monocytes)			Illumina [5084123] (imputed)	N
771	chr7	24442529	24442530	rs62450444	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	7p15.3	NR	rs62450444-T	0.154	2E-6	(IFNgamma_CXCL9_of_Monocytes)			Illumina [5084123] (imputed)	N
771	chr7	24449610	24449611	rs91	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (90 or 130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	7p15.3	intergenic	rs91-?	NR	7E-7		0.157	[0.079-0.235] unit increase	Illumina [at least 13000000] (imputed)	N
771	chr7	24471746	24471747	rs62448888	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	7p15.3	NR	rs62448888-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
771	chr7	24507029	24507030	rs62448936	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental longevity (combined parental age at death)	45,627 middle-aged British individuals	NA	7p15.3	NR	rs62448936-?	NR	4E-7		0.038805	[0.024-0.054] unit increase	Affymetrix [9658292] (imputed)	N
772	chr7	24514100	24514101	rs28459952	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	7p15.3	NR	rs28459952-?	NR	2E-6	(EA)	0.4564	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
772	chr7	24519655	24519656	rs11766140	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal adenoma (advanced)	636 Austrian ancestry cases, 4,294 European ancestry controls	NA	7p15.3	Intergenic	rs11766140-?		1E-6		1.366	[NR]	Affymetrix [492217] (imputed)	N
772	chr7	24520651	24520652	rs1858959	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	7p15.3		rs1858959-G	0.25	5E-9		5.84	z score increase	Affymetrix [9061022] (imputed)	N
772	chr7	24520651	24520652	rs1858959	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	7p15.3	NR	rs1858959-G	0.241	1E-8				NR [9056863] (imputed)	N
772	chr7	24526038	24526039	rs6461809	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Autism spectrum disorder (MTAG)	60,817 individuals	NA	7p15.3	NR	rs6461809-?		8E-9				NR [520857]	N
772	chr7	24526739	24526740	rs981747	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	7p15.3	Intergenic	rs981747-T	0.5092	4E-8		0.0107	[0.0068-0.0146] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
772	chr7	24529054	24529055	rs2711111	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	7p15.3		rs2711111-?	NR	2E-8				NR [~ 8900000] (imputed)	N
772	chr7	24530339	24530340	rs73084930	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	7p15.3	NR	rs73084930-G	NR	1E-6	(GEE model)	0.69382	[0.41-0.97] unit decrease	NR [NR] (imputed)	N
772	chr7	24534069	24534070	rs2521230	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	7p15.3	Intergenic	rs2521230-T	0.5097	5E-9	(MTAG)	0.0105	[0.007-0.014] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
772	chr7	24571037	24571038	rs2529069	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	7p15.3		rs2529069-T	0.7343	3E-11		0.0106	[0.0075-0.0137] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
772	chr7	24571037	24571038	rs2529069	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	7p15.3	Intergenic	rs2529069-T	0.7343	4E-11	(MTAG)	0.0098	[0.0069-0.0127] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
772	chr7	24590068	24590069	rs2711117	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7p15.3		rs2711117-?	NR	3E-9				NR [~ 8900000] (imputed)	N
772	chr7	24590330	24590331	rs2529055	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	7p15.3		rs2529055-G	NR	4E-10		0.0171	[0.012-0.022] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
772	chr7	24600678	24600679	rs2711125	31263163	Liu CT	2019-07-01	Sci Rep	Genome-wide Association Study of Change in Fasting Glucose over time in 13,807 non-diabetic European Ancestry Individuals.	Fasting glucose change (long-term)	3,669 European ancestry individuals	NA		MPP6	rs2711125-T	0.185	4E-6		0.142	[0.081-0.203] unit increase	Affymetrix, Illumina [~ 25000000] (imputed)	N
772	chr7	24613508	24613509	rs531359831	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	7p15.3		rs531359831-?	NR	8E-11				NR [~ 8900000] (imputed)	N
772	chr7	24621380	24621381	rs79265434	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	7p15.3		rs79265434-A	0.8834	2E-19		0.0197	[0.015-0.024] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
773	chr7	24647221	24647222	rs12672003	34002096	Mullins N	2021-05-17	Nat Genet	Genome-wide association study of more than 40,000 bipolar disorder cases provides new insights into the underlying biology.	Bipolar disorder	41,917 European ancestry cases, 371,549 European ancestry controls	NA	7p15.3	MPP6	rs12672003-A	0.887	3E-9		0.91211	[0.88-0.94]	Affymetrix, Illumina [7549318] (imputed)	N
773	chr7	24647221	24647222	rs12672003	33263727	Li HJ	2020-12-02	JAMA Psychiatry	Novel Risk Loci Associated With Genetic Risk for Bipolar Disorder Among Han Chinese Individuals: A Genome-Wide Association Study and Meta-analysis.	Bipolar disorder	1,822 Han Chinese ancestry cases, 4,650 Han Chinese ancestry controls, 20,352 European ancestry cases, 31,358 European ancestry controls	NA	7p15.3	DFNA5	rs12672003-A	NR	3E-8		0.893	[0.858-0.929]	Illumina [3742365] (imputed)	N
773	chr7	24653777	24653778	rs2390982	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	7p15.3	MPP6	rs2390982-?	NR	4E-11		0.02193995	[0.015-0.028] unit decrease	NR [7306098]	N
773	chr7	24662279	24662280	rs2529090	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	7p15.3		rs2529090-?	NR	7E-10				NR [~ 8900000] (imputed)	N
773	chr7	24664432	24664433	rs117606244	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		MPP6	rs117606244-?	NR	2E-8	(female)	0.485869	[NR] unit increase	Affymetrix [NR] (imputed)	N
773	chr7	24689981	24689982	rs78134612	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	7p15.3	NR	rs78134612-G	0.057	4E-8		0.0128367	[0.0083-0.0174] unit decrease	NR [9732723] (imputed)	N
773	chr7	24692551	24692552	rs2721800	23453885	Smoller JW	2013-02-27	Lancet	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NA	7p15.3	intergenic	rs2721800-C		6E-7	(Modelling analysis)	1.08	[1.05-1.12]	NR [1252901] (imputed)	N
773	chr7	24699328	24699329	rs2721816	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	7p15.3	NA	rs2721816-G		9E-10		0.0148831	[0.01-0.02] unit increase	Illumina [13288253] (imputed)	N
773	chr7	24707857	24707858	rs117460127	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Neuroticism	170,911 European ancestry individuals	NA	7p15.3	NR	rs117460127-A	0.05	8E-6		0.04416617	[0.025-0.064] unit increase	Affymetrix [up to 6544775] (imputed)	N
773	chr7	24717968	24717969	rs79210963	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Schizophrenia (MTAG)	940,613 European ancestry individuals	NA			rs79210963-?	NR	2E-9				NR [2625067]	N
773	chr7	24717968	24717969	rs79210963	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Schizophrenia (MTAG)	at least 33,640 European ancestry cases, at least 43,456 European ancestry controls	NA		NR	rs79210963-T	0.8917	4E-9		0.101115316	[0.068-0.135] unit decrease	NR [NR]	N
773	chr7	24717968	24717969	rs79210963	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	67,764 individuals	NA		NR	rs79210963-?		2E-9				NR [8377093]	N
773	chr7	24717968	24717969	rs79210963	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA		NR	rs79210963-?	NR	6E-9		1.0912265	[1.06-1.12]	Affymetrix, Illumina [12447948] (imputed)	N
773	chr7	24717968	24717969	rs79210963	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA		Intergenic	rs79210963-T	0.8846	1E-19	(MTAG)	0.0186	[0.015-0.023] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
773	chr7	24719605	24719606	rs2529049	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	7p15.3	MPP6	rs2529049-A	0.2525	1E-10		0.014	[0.0097-0.0183] unit increase	Affymetrix [18391927] (imputed)	N
773	chr7	24719605	24719606	rs2529049	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in obese individuals	4,613 European ancestry male individuals, 4,690 European ancestry female individuals, 142 European ancestry individuals	NA	7p15.3	MPP6, DFNA5	rs2529049-G	0.76	1E-6	(men)	0.119	[0.072-0.166] kg/m2 increase	Affymetrix, Illumina [at least 188473] (imputed)	N
773	chr7	24735003	24735004	rs112509803	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	7p15.3	DFNA5	rs112509803-C	NR	3E-7	(EA)	1.0919	[1.06-1.13]	Illumina [6627481] (imputed)	N
773	chr7	24735003	24735004	rs112509803	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	7p15.3	DFNA5	rs112509803-C	NR	1E-7		1.088	[1.06-1.12]	Illumina [6627481] (imputed)	N
773	chr7	24735003	24735004	rs112509803	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	7p15.3	DFNA5	rs112509803-C	NR	5E-8		1.09	[1.06-1.12]	Affymetrix, Illumina [up to 5107227] (imputed)	N
773	chr7	24735003	24735004	rs112509803	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	7p15.3	NR	rs112509803-C	NR	7E-7		1.09	[NR]	Illumina [7158791] (imputed)	N
773	chr7	24738163	24738164	rs12979	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	NA	7p15.3	DFNA5	rs12979-C	0.8698	1E-9		0.2739	[0.19-0.36] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
773	chr7	24749428	24749429	rs2721811	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms (MTAG)	955,012 individuals	NA	7p15.3	NR	rs2721811-?		3E-10				NR [520857]	N
773	chr7	24749428	24749429	rs2721811	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms	688,809 individuals	NA	7p15.3	NR	rs2721811-?		4E-8				NR [11140414]	N
773	chr7	24749428	24749429	rs2721811	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	7p15.3	NR	rs2721811-G	0.423301444031975	1E-10		0.0060133063	[0.0042-0.0078] unit increase	NR [NR]	N
773	chr7	24749428	24749429	rs2721811	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	7p15.3	NR	rs2721811-G	0.423301444031975	2E-10		0.009460165	[0.0065-0.0124] unit increase	NR [NR]	N
773	chr7	24749428	24749429	rs2721811	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	7p15.3	NR	rs2721811-G	0.423301444031975	2E-10		0.0060545807	[0.0042-0.0079] unit increase	NR [NR]	N
773	chr7	24749428	24749429	rs2721811	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depression	688,809 European ancestry individuals	NA	7p15.3	NR	rs2721811-A	NR	4E-8		5.502	z score decrease	Affymetrix [10847151] (imputed)	N
773	chr7	24749428	24749429	rs2721811	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms (MTAG)	354,862 European ancestry individuals	NA	7p15.3	NR	rs2721811-A	0.5749	4E-8		0.0119	[0.0076-0.0162] unit decrease	Illumina [NR] (imputed)	N
773	chr7	24756376	24756377	rs2299098	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	7p15.3		rs2299098-?	NR	2E-14				NR [~ 8900000] (imputed)	N
773	chr7	24756642	24756643	rs73082019	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on educational attainment (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	7p15.3		rs73082019-?	NR	2E-8				NR [NR]	N
773	chr7	24756642	24756643	rs73082019	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on Townsend deprivation index (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	7p15.3		rs73082019-?	NR	3E-8				NR [NR]	N
773	chr7	24757194	24757195	rs12530499	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on average household income before tax (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	7p15.3		rs12530499-?	NR	4E-9				NR [NR]	N
773	chr7	24758564	24758565	rs876308	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	7p15.3	NR	rs876308-A	0.417024437006669	5E-10		0.007322363	[0.005-0.0096] unit increase	NR [NR]	N
773	chr7	24758564	24758565	rs876308	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	7p15.3	NR	rs876308-A	0.417024437006669	6E-10		0.007763838	[0.0053-0.0102] unit increase	NR [NR]	N
773	chr7	24769277	24769278	rs2237318	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	7p15.3	Intergenic	rs2237318-T	0.3269	3E-14	(MTAG)	0.0134	[0.0099-0.0169] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
773	chr7	24771776	24771777	rs17150022	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	7p15.3	MPP6, DFNA5, OSBPL3	rs17150022-C	0.11599999999999999	9E-8		1.0944991		NR [9372253] (imputed)	N
773	chr7	24772408	24772409	rs2721796	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	7p15.3		rs2721796-T	NR	5E-9		0.016	[0.011-0.021] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
773	chr7	24772408	24772409	rs2721796	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	7p15.3	NR	rs2721796-C	0.177932	4E-11		0.060729645	[0.043-0.079] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
774	chr7	24772640	24772641	rs2521765	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	7p15.3	Intergenic	rs2521765-G	0.5452	9E-9		0.0131	[0.0086-0.0176] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
774	chr7	24774298	24774299	rs80012185	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Bipolar disorder (MTAG)	1,450,972 European ancestry individuals	NA			rs80012185-?	NR	1E-10				NR [2625067]	N
774	chr7	24774467	24774468	rs80195870	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Bipolar disorder (MTAG)	65,682 individuals	NA	7p15.3	NR	rs80195870-?		2E-10				NR [520857]	N
774	chr7	24775513	24775514	rs116052126	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Bipolar disorder (MTAG)	at least 20,352 European ancestry cases, at least 31,358 European ancestry controls	NA	7p15.3	NR	rs116052126-A	0.1223	2E-10		0.10083173	[0.07-0.132] unit increase	NR [NR]	N
774	chr7	24777089	24777090	rs146678232	29483656	Pardinas AF	2018-02-26	Nat Genet	Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.	Schizophrenia	40,675 European ancestry cases, 64,643 European ancestry controls	1,651 European ancestry cases, 4,111 cases, 142,717 European ancestry controls, 11,507 controls	7p15.3	DFNA5, MPP6	rs146678232-?	NR	2E-8		1.0729614	[1.05-1.10]	Illumina [8000000] (imputed)	N
774	chr7	24785881	24785882	rs12154597	31268507	Periyasamy S	2019-07-03	JAMA Psychiatry	Association of Schizophrenia Risk With Disordered Niacin Metabolism in an Indian Genome-wide Association Study.	Schizophrenia	816 Indian ancestry cases, 900 Indian ancestry controls, 505 Indian ancestry cases and 871 Indian ancestry controls from 405 families, up to 36,989 European and unknown ancestry cases, up to 113,075 European and unknown ancestry controls	NA	7p15.3	NR	rs12154597-?	NR	7E-7				Illumina [up to 5582932] (imputed)	N
774	chr7	24815572	24815573	rs6959900	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure	35,269 European ancestry cases, 63,451 European ancestry controls	NA	7p15.3	NR	rs6959900-A	0.255694	2E-7		1.075	[1.05-1.1]	Affymetrix [7791636] (imputed)	N
774	chr7	24826588	24826589	rs79879286	31926635	Coleman JRI	2019-11-01	Biol Psychiatry	The Genetics of the Mood Disorder Spectrum: Genome-wide Association Analyses of More Than 185,000 Cases and 439,000 Controls.	Bipolar disorder or major depressive disorder	164,933 European ancestry major depressive disorder cases, 20,352 European ancestry bipolar disorder cases, 439,741 European ancestry controls	NA	7p15.3	NR	rs79879286-C	NR	2E-11		1.04	[1.03-1.05]	NR [NR] (imputed)	N
774	chr7	24826588	24826589	rs79879286	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	7p15.3	OSBPL3, DFNA5	rs79879286-?		7E-11				NR [6786993] (imputed)	N
774	chr7	24842999	24843000	rs142915233	28762467	Wadelius M	2017-08-01	Clin Pharmacol Ther	Sulfasalazine-Induced Agranulocytosis Is Associated With the Human Leukocyte Antigen Locus.	Sulfasalazine-induced agranulocytosis	36 European ancestry cases, 5,170 European ancestry untreated controls	NA	7p15.3	OSBPL3	rs142915233-?	NR	7E-7		9.86	[3.99-24.34]	Illumina [9380034] (imputed)	N
774	chr7	24885746	24885747	rs17214144	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque score in type 2 diabetes	691 African American individuals	205 African American individuals	7p15.3	OSBPL3	rs17214144-?	NR	1E-6		0.864	[0.45-1.28] unit decrease	Illumina [at least 13000000] (imputed)	N
775	chr7	24908736	24908737	rs10248878	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	7p15.3	Intergenic	rs10248878-T	0.5967	7E-10	(MTAG)	0.0104	[0.0071-0.0137] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
775	chr7	24944237	24944238	rs116570811	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7p15.3	NR	rs116570811-A	0.01394	8E-10	(HADHA)	1.597	NR unit increase	Illumina [1671387] (imputed)	N
775	chr7	24944237	24944238	rs116570811	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7p15.3	NR	rs116570811-A	0.01394	8E-10	(CPT2)	0.2549	NR unit increase	Illumina [1671387] (imputed)	N
775	chr7	24944237	24944238	rs116570811	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7p15.3	NR	rs116570811-A	0.01394	3E-9	(NIPSNAP1)	0.2926	NR unit increase	Illumina [1671387] (imputed)	N
775	chr7	24944237	24944238	rs116570811	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7p15.3	NR	rs116570811-A	0.01394	3E-9	(HADHB)	0.6612	NR unit increase	Illumina [1671387] (imputed)	N
775	chr7	24944237	24944238	rs116570811	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7p15.3	NR	rs116570811-A	0.01394	2E-8	(VDAC1)	0.2767	NR unit increase	Illumina [1671387] (imputed)	N
775	chr7	24944237	24944238	rs116570811	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7p15.3	NR	rs116570811-A	0.01394	1E-8	(VDAC2)	0.07396	NR unit increase	Illumina [1671387] (imputed)	N
775	chr7	24944237	24944238	rs116570811	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7p15.3	NR	rs116570811-A	0.01394	1E-10	(SDHB)	0.1955	NR unit increase	Illumina [1671387] (imputed)	N
775	chr7	24962425	24962426	rs457	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	7p15.3	Intergenic	rs457-T	0.4495	4E-8	(MTAG)	0.0072	[0.0047-0.0097] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
775	chr7	24967712	24967713	rs112708260	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Pursuit maintenance gain	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	7p15.3	OSBPL3	rs112708260-T	0.1754	7E-6	(African)			Illumina [4404269] (imputed)	N
775	chr7	24967950	24967951	rs547694422	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		OSBPL3	rs547694422-?	NR	2E-10	(female)	0.61125	[NR] unit increase	Affymetrix [NR] (imputed)	N
775	chr7	24982493	24982494	rs4722407	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	7p15.3	Intergenic	rs4722407-A	0.662	2E-10	(MTAG)	0.0121	[0.0084-0.0158] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
775	chr7	24982493	24982494	rs4722407	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	7p15.3	Intergenic	rs4722407-A	0.662	7E-10		0.0127	[0.0086-0.0168] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
776	chr7	25077018	25077019	rs61295180	31641590	Stevelink R	2019-10-11	Mol Genet Metab Rep	Assessing the genetic association between vitamin B6 metabolism and genetic generalized epilepsy.	Pyridoxal 5'-phosphate levels	2,232 Irish ancestry individuals	NA	7p15.3	intergenic	rs61295180-?	NR	6E-8				NR [~ 6000000] (imputed)	N
776	chr7	25078542	25078543	rs10282247	34815687	Wu SE	2021-11-16	J Inflamm Res	A Genome-Wide Association Study Identifies Novel Risk Loci for Sarcopenia in a Taiwanese Population.	Low hand grip strength	34 Taiwanese ancestry cases, 62 Taiwanese ancestry controls	NA	7p15.3		rs10282247-?	0.05729	4E-6		17.51		Affymetrix [NR]	N
776	chr7	25106295	25106296	rs39426	33230199	Okada D	2020-11-23	J Hum Genet	Genome-wide association study of individual differences of human lymphocyte profiles using large-scale cytometry data.	T cell lymphocyte profile difference (90 days post influenza vaccination)	298 individuals	NA	7p15.3	NR	rs39426-?	NR	8E-10			[NR]	NR [1665663]	N
776	chr7	25115315	25115316	rs2711015	30498476	Liu H	2018-11-15	Front Endocrinol (Lausanne)	Heritability and Genome-Wide Association Study of Plasma Cholesterol in Chinese Adult Twins.	High density lipoprotein cholesterol levels	139 Chinese ancestry dizygotic twin pairs	NA	7p15.3	CYCS	rs2711015-?		3E-6				Illumina [7405822] (imputed)	N
776	chr7	25128991	25128992	rs39447	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	7p15.3	NR	rs39447-C	NR	2E-6	(GEE model)	0.52406	[0.31-0.74] unit increase	NR [NR] (imputed)	N
776	chr7	25161601	25161602	rs1861525	23535033	Sherva R	2013-03-24	Alzheimers Dement	Genome-wide association study of the rate of cognitive decline in Alzheimer's disease.	Alzheimer's disease (cognitive decline)	303 European ancestry cases		7p15.3	CYCS	rs1861525-?	0.03	2E-7		0.25	unit decrease	Illumina [NR] (imputed)	N
776	chr7	25161601	25161602	rs1861525	19838195	Gateva V	2009-11-01	Nat Genet	A large-scale replication study identifies TNIP1, PRDM1, JAZF1, UHRF1BP1 and IL10 as risk loci for systemic lupus erythematosus.	Systemic lupus erythematosus	1,310 European ancestry cases, 7,859 European ancestry controls	1,963 European ancestry cases, 4,329 European ancestry controls	7p15.3	CYCS	rs1861525-G	0.05	2E-6		1.27	[1.12-1.45]	Illumina [~ 2100000] (imputed)	N
777	chr7	25216115	25216116	rs12700593	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Measles	38,219 European ancestry cases, 47,279 European ancestry controls	NA	7p15.3	NR	rs12700593-?	NR	2E-6		0.0659	[0.039-0.093] unit increase	Illumina [at least 560000] (imputed)	N
777	chr7	25223186	25223187	rs79234960	31206233	Real LM	2019-06-17	Liver Int	A genome-wide association study in low susceptibility to hepatitis C virus infection (GEHEP012 Study).	Low susceptibility to hepatitis C infection	27 Spanish ancestry uninfected high-risk individuals, 804 Spanish ancestry infected individuals	NA	7p15.3	C7orf31	rs79234960-G	0.01119	8E-6		13.16	[5.24-33.01]	Affymetrix [7675561] (imputed)	N
777	chr7	25247301	25247302	rs75137058	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	7p15.3	NR	rs75137058-?	NR	5E-8		0.17517	[0.11-0.24] unit increase	Affymetrix [7794483] (imputed)	N
777	chr7	25247301	25247302	rs75137058	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	7p15.3	NR	rs75137058-?	NR	3E-8	(female)	0.28908	[0.19-0.39] unit increase	Affymetrix [7794483] (imputed)	N
777	chr7	25256269	25256270	rs12669910	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	7p15.3	AC004129.9	rs12669910-C	NR	1E-8		0.0195844	[0.013-0.026] unit increase	Affymetrix [321114] (imputed)	N
777	chr7	25272619	25272620	rs929255	29503163	Yu H	2018-03-01	Lancet Psychiatry	Five novel loci associated with antipsychotic treatment response in patients with schizophrenia: a genome-wide association study.	Response to haloperidol in schizophrenia	192 Han Chinese ancestry cases	NA	7p15.3	NPVF	rs929255-C	NR	8E-7		14.7695	[9.11-20.43] unit increase	Illumina [6097251] (imputed)	N
777	chr7	25286004	25286005	rs10435093	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7p15.3		rs10435093-?	NR	3E-12				NR [~ 8900000] (imputed)	N
777	chr7	25295345	25295346	rs916893	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	7p15.3	NR	rs916893-?	NR	6E-9				Affymetrix [~ 8270000] (imputed)	N
778	chr7	25303276	25303277	rs7790963	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	7p15.3	NR	rs7790963-?	NR	8E-7				Illumina [at least 7383741] (imputed)	N
778	chr7	25342353	25342354	rs7801574	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	7p15.3	AC003985.1	rs7801574-T	NR	1E-8		0.0175219	[0.011-0.024] unit decrease	Affymetrix [321016] (imputed)	N
778	chr7	25353797	25353798	rs6948208	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	7p15.3		rs6948208-?	NR	5E-8				NR [~ 8900000] (imputed)	N
778	chr7	25420101	25420102	rs74414571	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	7p15.3		rs74414571-C	0.087834	3E-11		0.02611834	[0.018-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
778	chr7	25420101	25420102	rs74414571	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p15.3	NR	rs74414571-C	0.0822477	5E-12				Affymetrix, Illumina [24653286] (imputed)	N
778	chr7	25420101	25420102	rs74414571	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	7p15.3	NR	rs74414571-C	0.08624	9E-14		0.024558	[0.018-0.031] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
778	chr7	25420101	25420102	rs74414571	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p15.3	NR	rs74414571-C	0.0833043	4E-10				Affymetrix, Illumina [24558453] (imputed)	N
778	chr7	25420101	25420102	rs74414571	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	7p15.3	NR	rs74414571-C	0.086329	1E-11		0.022345	[0.016-0.029] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
779	chr7	25447793	25447794	rs138267591	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	7p15.3		rs138267591-C	0.086031	3E-11		0.026622808	[0.019-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
779	chr7	25448144	25448145	rs10228465	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	7p15.3	NR	rs10228465-?	NR	3E-7				Illumina [at least 7383741] (imputed)	N
779	chr7	25466822	25466823	rs17310107	29855589	Chernus J	2018-05-31	Sci Rep	GWAS reveals loci associated with velopharyngeal dysfunction.	Velopharyngeal dysfunction	54 Hispanic or Latin American and unknown ancestry cases, 922 Hispanic or Latin American and unknown ancestry controls	NA	7p15.3	NR	rs17310107-?	NR	1E-6		0.11600515	[NR] unit decrease	Illumina [at least 269494] (imputed)	N
779	chr7	25486375	25486376	rs62452204	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	7p15.3		rs62452204-?	NR	3E-9				NR [~ 8900000] (imputed)	N
779	chr7	25528303	25528304	rs6957127	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	7p15.3	NR	rs6957127-?	NR	9E-6	(AA)	10.31	[8.74-11.88]	Illumina [905956]	N
780	chr7	25561472	25561473	rs553272900	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	7p15.2	AC091705.1	rs553272900-C	0.9983	9E-6		0.5938	[0.33-0.86] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
780	chr7	25567854	25567855	rs10807828	25778476	Jun G	2015-03-17	Mol Psychiatry	A novel Alzheimer disease locus located near the gene encoding tau protein.	Alzheimer's disease in APOE e4- carriers	7,184 cases, 26,968 controls	718 European ancestry cases, 1,699 European ancestry controls	7p15.2	NPVF, UBA52P1	rs10807828-C	0.51	7E-6		1.098901	[1.05-1.15]	NR [NR]	N
780	chr7	25569547	25569548	rs289997	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	7p15.2	NR	rs289997-T	0.1623	3E-7	(EA)	0.0448	[0.028-0.062] unit decrease	Illumina [~ 11800000] (imputed)	N
780	chr7	25593223	25593224	rs7778975	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	7p15.2	NR	rs7778975-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
780	chr7	25600890	25600891	rs11769634	29532581	Hallfors J	2018-03-13	Addict Biol	Genome-wide association study in Finnish twins highlights the connection between nicotine addiction and neurotrophin signaling pathway.	Nicotine dependence symptom count	1,715 Finnish ancestry ever smoker individuals from 739 families	NA	7p15.2	NR	rs11769634-G	0.288	5E-6		0.3	[0.16-0.44] unit decrease	Illumina [9469131] (imputed)	N
780	chr7	25604122	25604123	rs76958973	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	7p15.2	NR	rs76958973-?	NR	1E-13				Illumina [at least 7383741] (imputed)	N
780	chr7	25608408	25608409	rs17151904	20009918	Shrestha S	2010-01-01	AIDS	A genome-wide association study of carotid atherosclerosis in HIV-infected men.	Carotid atherosclerosis in HIV infection	177 European ancestry individuals	NA	7p15.2	intergenic	rs17151904-A	0.20	1E-6	(internal cIMT)			Illumina [311194]	N
780	chr7	25612660	25612661	rs975369	23551011	Zhao L	2013-04-02	Ann Hum Genet	Genome-wide association study of pre-eclampsia detects novel maternal single nucleotide polymorphisms and copy-number variants in subsets of the Hyperglycemia and Adverse Pregnancy Outcome (HAPO) study cohort.	Preeclampsia	21 Afro-Caribbean cases, 1,010 Afro-Caribbean controls, 50 European ancestry cases, 1,202 European ancestry controls, 62 Hispanic cases, 658 Hispanic controls	NA	7p15.2	NPVF	rs975369-?	NR	8E-6	(Afro-Caribbean)	4.55	[2.34-8.83]	Illumina [2485249] (imputed)	N
780	chr7	25651710	25651711	rs2134479	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7p15.2		rs2134479-?	NR	3E-10				NR [~ 8900000] (imputed)	N
780	chr7	25656362	25656363	rs73085996	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	7p15.2	AC005165.1	rs73085996-C	0.2319	5E-10		0.0139	[0.0096-0.0182] unit decrease	Affymetrix [18391927] (imputed)	N
780	chr7	25656362	25656363	rs73085996	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	7p15.2	NR	rs73085996-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
780	chr7	25676556	25676557	rs12540389	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	7p15.2	AC003090.1	rs12540389-G	NR	1E-8		0.0205395	[0.014-0.028] unit decrease	Affymetrix [321788] (imputed)	N
780	chr7	25676556	25676557	rs12540389	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	7p15.2	AC003090.1	rs12540389-G	NR	9E-9		0.0198079	[0.013-0.027] unit decrease	Affymetrix [321016] (imputed)	N
781	chr7	25692644	25692644	rs756907629	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	7p15.2	AC003090.1	rs756907629-CAATCCAAATGGG	NR	5E-9		0.0173661	[0.012-0.023] unit decrease	Affymetrix [321016] (imputed)	N
781	chr7	25699860	25699861	rs87	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	7p15.2	MIR148A	rs87-A	0.195532	2E-68		0.04019	[0.036-0.045] unit decrease	NR [13737936] (imputed)	N
781	chr7	25699860	25699861	rs87	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	7p15.2		rs87-?	NR	4E-57				NR [~ 8900000] (imputed)	N
781	chr7	25699860	25699861	rs87	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	7p15.2		rs87-?	NR	7E-56		0.0393006	[0.034-0.044] unit decrease	Affymetrix [20259828] (imputed)	N
781	chr7	25702025	25702026	rs85	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	7p15.2		rs85-?	NR	3E-55		0.038971	[0.034-0.044] unit decrease	Affymetrix [20259828] (imputed)	N
781	chr7	25702025	25702026	rs85	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	7p15.2	MIR148A	rs85-T	0.2007	4E-16	(women)	0.0435003	[0.032-0.055] unit decrease	NR [17166351] (imputed)	N
781	chr7	25702025	25702026	rs85	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	7p15.2	MIR148A	rs85-T	0.199942	2E-20		0.0375427	[0.029-0.046] unit decrease	NR [17166351] (imputed)	N
781	chr7	25702025	25702026	rs85	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	7p15.2	MIR148A	rs85-T	0.199074	2E-7	(men)	0.03039	[0.018-0.043] unit decrease	NR [17166351] (imputed)	N
781	chr7	25704353	25704353	rs772499003	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	7p15.2	AC003090.1	rs772499003-C	NR	6E-17		0.0311192	[0.024-0.038] unit decrease	Affymetrix [321788] (imputed)	N
781	chr7	25704353	25704353	rs772499003	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	7p15.2	AC003090.1	rs772499003-C	NR	4E-16		0.0291524	[0.022-0.036] unit decrease	Affymetrix [321016] (imputed)	N
781	chr7	25704364	25704365	rs4719818	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	7p15.2	AC003090.1	rs4719818-G	NR	5E-12		0.0202404	[0.014-0.026] unit decrease	Affymetrix [321788] (imputed)	N
781	chr7	25704364	25704365	rs4719818	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	7p15.2	AC003090.1	rs4719818-G	NR	2E-8		0.0158845	[0.01-0.021] unit decrease	Affymetrix [321016] (imputed)	N
781	chr7	25710931	25710932	rs73087963	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	7p15.2	AC003090.1	rs73087963-T	NR	9E-10		0.0346997	[0.024-0.046] unit decrease	Affymetrix [321016] (imputed)	N
781	chr7	25741122	25741122	rs202123196	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Creatinine levels	110,051 European ancestry individuals	NA	7p15.2		rs202123196-G	0.71738	3E-10		0.0251049	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
781	chr7	25775689	25775690	rs2058024	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	7p15.2	MIR148A	rs2058024-A	0.6533	6E-9		0.002	[0.0014-0.0026] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
781	chr7	25783821	25783822	rs4722516	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	7p15.2	AC003090.1	rs4722516-G	NR	1E-12		0.0233566	[0.017-0.03] unit decrease	Affymetrix [321788] (imputed)	N
781	chr7	25793256	25793257	rs73089698	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	7p15.2		rs73089698-C	NR	3E-16		0.015	[0.011-0.019] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
781	chr7	25799725	25799726	rs10270417	33239672	Laisk T	2020-11-25	Nat Commun	The genetic architecture of sporadic and multiple consecutive miscarriage.	Sporadic miscarriage	273 African ancestry cases, 2,919 African American cases, 390 Caribbean ancestry cases, 8,997 Chinese ancestry cases, 49,996 European ancestry cases, 1,151 Hispanic American cases, 511 South Asian ancestry cases, 482 African ancestry controls, 4,546 African American controls, 957 Caribbean ancestry controls, 126,723 Chinese ancestry controls, 174,109 European ancestry controls,  2,195 Hispanic American controls, 1,424 South Asian ancestry controls	NA	7p15.2	NR	rs10270417-C	0.98	6E-9				Affymetrix, Illumina [8664066] (imputed)	N
781	chr7	25803253	25803254	rs57425123	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (positive Marder score)	1,390 European ancestry cases	NA	7p15.2		rs57425123-A	NR	8E-6	(GLM)	1.1038	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
781	chr7	25803529	25803530	rs77130839	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7p15.2	NR	rs77130839-A	0.02091	2E-8	(AGRN)	0.01694	NR unit increase	Illumina [1671387] (imputed)	N
782	chr7	25823646	25823647	rs960589	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	7p15.2	AC003090.1	rs960589-C	NR	2E-16		0.0329144	[0.025-0.041] unit decrease	Affymetrix [321788] (imputed)	N
782	chr7	25823646	25823647	rs960589	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	7p15.2	AC003090.1	rs960589-C	NR	1E-8		0.0220524	[0.015-0.03] unit decrease	Affymetrix [321016] (imputed)	N
782	chr7	25823646	25823647	rs960589	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	7p15.2	NR	rs960589-?	NR	7E-9				Affymetrix [~ 8270000] (imputed)	N
782	chr7	25827966	25827967	rs76456334	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	7p15.2	NFE2L3	rs76456334-T	0.960372	6E-13		0.0369205	[0.027-0.047] unit increase	Affymetrix [NR] (imputed)	N
782	chr7	25834534	25834535	rs76970939	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	7p15.2	AC003090.1	rs76970939-C	NR	4E-10		0.0434351	[0.03-0.057] unit increase	Affymetrix [319769] (imputed)	N
782	chr7	25834534	25834535	rs76970939	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	7p15.2	AC003090.1	rs76970939-C	NR	6E-11		0.0453613	[0.032-0.059] unit increase	Affymetrix [319769] (imputed)	N
782	chr7	25834534	25834535	rs76970939	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	7p15.2	NR	rs76970939-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
782	chr7	25847317	25847318	rs58937146	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	7p15.2	AC003090.1	rs58937146-G	NR	2E-17		0.0314857	[0.024-0.039] unit increase	Affymetrix [319769] (imputed)	N
782	chr7	25847317	25847318	rs58937146	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	7p15.2	AC003090.1	rs58937146-G	NR	8E-19		0.0328401	[0.026-0.04] unit increase	Affymetrix [319769] (imputed)	N
782	chr7	25847317	25847318	rs58937146	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	7p15.2	AC003090.1	rs58937146-G	NR	5E-12		0.0257594	[0.018-0.033] unit increase	Affymetrix [321114] (imputed)	N
782	chr7	25847317	25847318	rs58937146	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	7p15.2	AC003090.1	rs58937146-G	NR	2E-14		0.0293862	[0.022-0.037] unit decrease	Affymetrix [321788] (imputed)	N
782	chr7	25856115	25856116	rs286701	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	7p15.2		rs286701-?	NR	3E-12				NR [~ 8900000] (imputed)	N
782	chr7	25857524	25857525	rs4141278	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	7p15.2	NFE2L3	rs4141278-C	0.19920000000000004	5E-11	(women)	0.0412	[0.029-0.054] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
782	chr7	25857524	25857525	rs4141278	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	7p15.2	NFE2L3	rs4141278-C	0.19540000000000002	2E-11	(women)	0.0493	[0.035-0.064] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
782	chr7	25857524	25857525	rs4141278	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	7p15.2	NFE2L3	rs4141278-C	0.19540000000000002	2E-11	(EA, women)	0.0493	[0.035-0.064] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
782	chr7	25857524	25857525	rs4141278	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	7p15.2	NFE2L3	rs4141278-?	0.19920000000000004	3E-11	(women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
782	chr7	25857524	25857525	rs4141278	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	7p15.2	NFE2L3	rs4141278-?	0.19920000000000004	3E-11	(EA, women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
782	chr7	25857524	25857525	rs4141278	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	7p15.2	UBA52P1	rs4141278-C	0.19799999999999995	1E-11	(EA)	0.0368	[0.026-0.047] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
782	chr7	25857524	25857525	rs4141278	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	7p15.2	UBA52P1	rs4141278-C	0.1945	6E-9	(EA,women)	0.0402	[0.027-0.054] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
782	chr7	25857524	25857525	rs4141278	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	7p15.2	UBA52P1	rs4141278-?	0.19799999999999995	2E-11	(EA, women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
782	chr7	25857524	25857525	rs4141278	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in non-smokers	77,113 European ancestry women, 47,319 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	7p15.2	NFE2L3	rs4141278-T	0.7935	2E-12		0.0344	[0.025-0.044] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
782	chr7	25857524	25857525	rs4141278	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in non-smokers	77,113 European ancestry women, 47,319 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	7p15.2	NFE2L3	rs4141278-T	0.7935	1E-10	(women)	0.0414	[0.029-0.054] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
782	chr7	25857524	25857525	rs4141278	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	7p15.2	NFE2L3	rs4141278-T	0.7935	3E-14				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
782	chr7	25857524	25857525	rs4141278	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	7p15.2	NFE2L3	rs4141278-T	0.7935	2E-11	(women)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
782	chr7	25857524	25857525	rs4141278	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	7p15.2	NFE2L3	rs4141278-T	0.7935	4E-11	(women)	0.0385	[0.027-0.05] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
782	chr7	25857524	25857525	rs4141278	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	7p15.2	NFE2L3	rs4141278-T	0.7935	1E-12		0.0315	[0.023-0.04] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
782	chr7	25857524	25857525	rs4141278	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	7p15.2	NR	rs4141278-T	0.801724671969546	4E-16		0.033633854	units decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
782	chr7	25857524	25857525	rs4141278	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	7p15.2	NFE2L3	rs4141278-T	0.8009	5E-11	(EA,women)	0.0363	[0.026-0.047] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
782	chr7	25857524	25857525	rs4141278	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	7p15.2	NFE2L3	rs4141278-T	0.8009	3E-15	(EA)	0.0335	[0.025-0.042] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
782	chr7	25857524	25857525	rs4141278	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	7p15.2	NFE2L3	rs4141278-T	0.8009	2E-7	(EA, men)	0.0307	[0.019-0.042] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
782	chr7	25858613	25858614	rs10245353	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	7p15.2	MIR148A	rs10245353-C	0.809367	5E-14		0.0175226	[0.013-0.022] unit decrease	NR [13737936] (imputed)	N
782	chr7	25858613	25858614	rs10245353	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	7p15.2		rs10245353-?	NR	6E-10				NR [~ 8900000] (imputed)	N
782	chr7	25858613	25858614	rs10245353	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	7p15.2		rs10245353-?	NR	3E-11		0.0173671	[0.012-0.023] unit decrease	Affymetrix [20259828] (imputed)	N
782	chr7	25858613	25858614	rs10245353	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	7p15.2	NFE2L3	rs10245353-A	0.2306	4E-10	(women)	0.0371	[0.026-0.049] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
782	chr7	25858613	25858614	rs10245353	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	7p15.2	NFE2L3	rs10245353-A	0.2047	2E-16		0.0347	[0.026-0.043] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
782	chr7	25858613	25858614	rs10245353	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	7p15.2	NFE2L3	rs10245353-A	0.1998	8E-16	(EA)	0.0348	[0.026-0.043] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
782	chr7	25858613	25858614	rs10245353	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	7p15.2	NFE2L3	rs10245353-A	0.1977	1E-13	(women)	0.0423	[0.031-0.053] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
782	chr7	25858613	25858614	rs10245353	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	7p15.2	NFE2L3	rs10245353-A	0.1961	8E-13	(EA, women)	0.0414	[0.03-0.053] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
782	chr7	25858613	25858614	rs10245353	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-hip ratio	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	7p15.2	NFE2L3	rs10245353-A	0.1995	2E-10	(EA)	0.0271	[0.019-0.035] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
782	chr7	25858613	25858614	rs10245353	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-hip ratio	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	7p15.2	NFE2L3	rs10245353-A	0.1995	1E-9	(EA, women)	0.0341	[0.023-0.045] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
782	chr7	25860395	25860396	rs62447870	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	7p15.2	NR	rs62447870-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
782	chr7	25860579	25860580	rs7798002	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	7p15.2		rs7798002-?	NR	5E-11		0.0169036	[0.012-0.022] unit decrease	Affymetrix [20259828] (imputed)	N
782	chr7	25860811	25860812	rs7798431	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	7p15.2	UBA52P1	rs7798431-A	0.2505	2E-11	(EA, women)	0.0381	[0.027-0.049] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
782	chr7	25861638	25861639	rs3902751	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	7p15.2	NFE2L3	rs3902751-A	0.3178	1E-10	(women)	0.033	[0.023-0.043] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
782	chr7	25861638	25861639	rs3902751	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex x age interaction (4df test)	up to 43,776 European ancestry men aged <50, up to 50,526 European ancestry women aged <50, up to 69,944 European ancestry men aged >50, up to 88,129 European ancestry women aged >50	NA	7p15.2	NR	rs3902751-A	0.24849096764601	1E-15				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
782	chr7	25861638	25861639	rs3902751	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	7p15.2	NFE2L3	rs3902751-A	0.2675	2E-13		0.0277	[0.02-0.035] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
782	chr7	25861638	25861639	rs3902751	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	7p15.2	NFE2L3	rs3902751-A	0.2613	1E-12	(women)	0.0358	[0.026-0.046] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
782	chr7	25861638	25861639	rs3902751	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	7p15.2	NFE2L3	rs3902751-A	0.2501	6E-14	(EA)	0.0294	[0.022-0.037] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
782	chr7	25861638	25861639	rs3902751	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	7p15.2	NFE2L3	rs3902751-A	0.2474	1E-13	(EA, women)	0.0386	[0.028-0.049] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
782	chr7	25871108	25871109	rs1055144	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	7p15.2	NR	rs1055144-T	0.19	8E-44		0.03	[0.026-0.034] unit increase	Affymetrix [2446094] (imputed)	N
782	chr7	25871108	25871109	rs1055144	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	7p15.2	NR	rs1055144-T	0.19	5E-8				Affymetrix [2446094] (imputed)	N
782	chr7	25871108	25871109	rs1055144	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	7p15.2	NFE2L3	rs1055144-T	0.1997	5E-11	(EA, women)	0.0422	[0.03-0.055] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
782	chr7	25871108	25871109	rs1055144	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	7p15.2	NFE2L3	rs1055144-T	0.1997	4E-6	(EA, men)	0.0338	[0.019-0.048] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
782	chr7	25871108	25871109	rs1055144	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	7p15.2	NFE2L3	rs1055144-T	0.1997	3E-7	(men)	0.0344	[0.021-0.048] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
782	chr7	25871108	25871109	rs1055144	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	7p15.2	NFE2L3	rs1055144-T	0.1997	3E-15		0.0371	[0.028-0.046] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
782	chr7	25871108	25871109	rs1055144	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	7p15.2	NFE2L3	rs1055144-T	0.1997	3E-14	(EA)	0.038	[0.028-0.048] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
782	chr7	25871108	25871109	rs1055144	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	7p15.2	NFE2L3	rs1055144-T	0.1997	6E-13	(EA)	0.0404	[0.029-0.051] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
782	chr7	25871108	25871109	rs1055144	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	7p15.2	NFE2L3	rs1055144-T	0.1997	6E-13		0.0404	[0.029-0.051] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
782	chr7	25871108	25871109	rs1055144	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	7p15.2	NFE2L3	rs1055144-?	0.1997	7E-6	(men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
782	chr7	25871108	25871109	rs1055144	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	7p15.2	NFE2L3	rs1055144-?	0.1997	7E-6	(EA, men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
782	chr7	25871108	25871109	rs1055144	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	7p15.2	NFE2L3	rs1055144-?	0.1997	2E-14	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
782	chr7	25871108	25871109	rs1055144	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	7p15.2	NFE2L3	rs1055144-?	0.1997	2E-14				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
782	chr7	25871108	25871109	rs1055144	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	7p15.2	UBA52P1	rs1055144-T	0.2053	9E-7	(men)	0.0319	[0.019-0.045] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
782	chr7	25871108	25871109	rs1055144	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	7p15.2	UBA52P1	rs1055144-T	0.2053	7E-16		0.0358	[0.027-0.044] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
782	chr7	25871108	25871109	rs1055144	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	7p15.2	UBA52P1	rs1055144-T	0.2053	3E-6	(women)	0.0311	[0.018-0.044] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
782	chr7	25871108	25871109	rs1055144	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	7p15.2	UBA52P1	rs1055144-T	0.1983	5E-15	(EA)	0.0368	[0.028-0.046] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
782	chr7	25871108	25871109	rs1055144	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	7p15.2	UBA52P1	rs1055144-T	0.1983	4E-6	(EA, men)	0.0321	[0.018-0.046] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
782	chr7	25871108	25871109	rs1055144	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in inactive individuals	561 African American women, 352 Filipino ancestry women, 725 Indian ancestry women, 19,288 European ancestry women, 251 African American men, 4,654 Indian ancestry men, 11,681 European ancestry men, 959 European ancestry individuals	1,437 African American women, 5,184 European ancestry women, 64 African American men, 5,416 European ancestry men	7p15.2	UBA52P1	rs1055144-T	0.23	1E-6		0.0427	[0.026-0.06] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
782	chr7	25871108	25871109	rs1055144	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in inactive individuals	561 African American women, 352 Filipino ancestry women, 725 Indian ancestry women, 19,288 European ancestry women, 251 African American men, 4,654 Indian ancestry men, 11,681 European ancestry men, 959 European ancestry individuals	1,437 African American women, 5,184 European ancestry women, 64 African American men, 5,416 European ancestry men	7p15.2	UBA52P1	rs1055144-T	0.1948	1E-6	(EA)	0.0477	[0.028-0.067] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
782	chr7	25871108	25871109	rs1055144	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	7p15.2	UBA52P1	rs1055144-T	0.2067	3E-6	(women)	0.0352	[0.021-0.05] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
782	chr7	25871108	25871109	rs1055144	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	7p15.2	UBA52P1	rs1055144-T	0.2053	6E-12		0.0357	[0.026-0.046] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
782	chr7	25871108	25871109	rs1055144	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	7p15.2	UBA52P1	rs1055144-?	0.2053	6E-7	(men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
782	chr7	25871108	25871109	rs1055144	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	7p15.2	UBA52P1	rs1055144-?	0.2053	3E-16				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
782	chr7	25871108	25871109	rs1055144	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	7p15.2	UBA52P1	rs1055144-?	0.2053	2E-6	(women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
782	chr7	25871108	25871109	rs1055144	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	7p15.2	UBA52P1	rs1055144-?	0.1983	3E-6	(EA, men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
782	chr7	25871108	25871109	rs1055144	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	7p15.2	UBA52P1	rs1055144-?	0.1983	1E-15	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
782	chr7	25871108	25871109	rs1055144	20935629	Heid IM	2010-10-10	Nat Genet	Meta-analysis identifies 13 new loci associated with waist-hip ratio and reveals sexual dimorphism in the genetic basis of fat distribution.	Waist-hip ratio	Up to 77,167 European ancestry individuals	Up to 113,636 European ancestry individuals	7p15.2	NFE2L3	rs1055144-T	0.21	1E-24		0.04	[NR] unit increase	Affymetrix, Illumina, Perlegen [up to 2850269] (imputed)	N
782	chr7	25871932	25871933	rs6958350	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex x age interaction (4df test)	up to 43,776 European ancestry men aged <50, up to 50,526 European ancestry women aged <50, up to 69,944 European ancestry men aged >50, up to 88,129 European ancestry women aged >50	NA	7p15.2	NFE2L3, RNU6-16, MIR148A, HNRNPA2B1, CBX3, SNX10	rs6958350-T	0.25	8E-14				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
782	chr7	25871932	25871933	rs6958350	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI (age >50)	up to 69,944 European ancestry men, up to 88,129 European ancestry women	NA	7p15.2	NFE2L3, RNU6-16, MIR148A, HNRNPA2B1, CBX3, SNX10	rs6958350-T	0.250022809109492	5E-7	(women)	0.0329	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
782	chr7	25871932	25871933	rs6958350	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI (age <50)	up to 43,776 European ancestry men, up to 50,526 European ancestry women	NA	7p15.2	NFE2L3, RNU6-16; MIR148A; HNRNPA2B1; CBX3; SNX10	rs6958350-T	0.25	7E-9	(women)	0.047	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
782	chr7	25871932	25871933	rs6958350	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	7p15.2	NFE2L3, RNU6-16, MIR148A, HNRNPA2B1, CBX3, SNX10	rs6958350-T	0.250023	8E-14		0.0329	units increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
782	chr7	25874230	25874231	rs75166914	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	7p15.2	NR	rs75166914-?	NR	6E-10				Affymetrix [~ 8270000] (imputed)	N
782	chr7	25884101	25884102	rs4722530	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	7p15.2	AC003090.1	rs4722530-T	NR	3E-26		0.0378325	[0.031-0.045] unit increase	Affymetrix [321114] (imputed)	N
782	chr7	25884101	25884102	rs4722530	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	7p15.2	AC003090.1	rs4722530-T	NR	8E-18		0.0307752	[0.024-0.038] unit increase	Affymetrix [321169] (imputed)	N
782	chr7	25884101	25884102	rs4722530	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	7p15.2		rs4722530-?	NR	3E-32				NR [~ 8900000] (imputed)	N
782	chr7	25884101	25884102	rs4722530	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	7p15.2		rs4722530-?	NR	9E-9				NR [~ 8900000] (imputed)	N
782	chr7	25886124	25886125	rs56376645	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	7p15.2	NR	rs56376645-?	NR	1E-22				Affymetrix [~ 8270000] (imputed)	N
782	chr7	25886124	25886125	rs56376645	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	7p15.2	NR	rs56376645-?	NR	2E-14				Affymetrix [~ 8270000] (imputed)	N
782	chr7	25886477	25886478	rs979165	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	7p15.2		rs979165-G	NR	1E-9		0.0131	[0.009-0.0172] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
782	chr7	25887277	25887278	rs2290263	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	7p15.2		rs2290263-?	NR	1E-10				NR [~ 8900000] (imputed)	N
782	chr7	25887277	25887278	rs2290263	26831199	Pattaro C	2016-01-21	Nat Commun	Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function.	Glomerular filtration rate (creatinine)	133,413 European ancestry individuals	42,166 European ancestry individuals, up to 16,471 African ancestry individuals, up to 42,296 Asian ancestry individuals	7p15.2	MIR148A	rs2290263-A	0.73	7E-7	(EA)	0.0045	[0.0027-0.0063] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
782	chr7	25888066	25888067	rs73093663	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	7p15.2	AC003090.1	rs73093663-G	NR	3E-12		0.0361387	[0.026-0.046] unit increase	Affymetrix [319769] (imputed)	N
782	chr7	25888066	25888067	rs73093663	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	7p15.2	AC003090.1	rs73093663-G	NR	5E-13		0.0373864	[0.027-0.048] unit increase	Affymetrix [319769] (imputed)	N
782	chr7	25888066	25888067	rs73093663	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	7p15.2	AC003090.1	rs73093663-G	NR	6E-10		0.0322192	[0.022-0.042] unit increase	Affymetrix [321114] (imputed)	N
782	chr7	25888066	25888067	rs73093663	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	7p15.2	AC003090.1	rs73093663-G	NR	7E-9		0.0310094	[0.021-0.042] unit decrease	Affymetrix [321788] (imputed)	N
782	chr7	25889696	25889697	rs57246313	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	7p15.2	CTD-2227E11.1	rs57246313-A	NR	8E-33		0.0422911	[0.035-0.049] unit increase	Affymetrix [319769] (imputed)	N
782	chr7	25889696	25889697	rs57246313	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	7p15.2	CTD-2227E11.1	rs57246313-A	NR	1E-34		0.0435203	[0.037-0.05] unit increase	Affymetrix [319769] (imputed)	N
782	chr7	25889696	25889697	rs57246313	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7p15.2		rs57246313-?	NR	5E-34				NR [~ 8900000] (imputed)	N
782	chr7	25892276	25892277	rs77601902	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	7p15.2	CTD-2227E11.1	rs77601902-T	NR	9E-19		0.039343	[0.031-0.048] unit increase	Affymetrix [319769] (imputed)	N
782	chr7	25892276	25892277	rs77601902	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	7p15.2	CTD-2227E11.1	rs77601902-T	NR	1E-19		0.0402889	[0.032-0.049] unit increase	Affymetrix [319769] (imputed)	N
782	chr7	25892276	25892277	rs77601902	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	7p15.2	CTD-2227E11.1	rs77601902-T	NR	5E-15		0.0350395	[0.026-0.044] unit increase	Affymetrix [321114] (imputed)	N
782	chr7	25892276	25892277	rs77601902	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	7p15.2	CTD-2227E11.1	rs77601902-T	NR	7E-9		0.0267657	[0.018-0.036] unit decrease	Affymetrix [321788] (imputed)	N
782	chr7	25892276	25892277	rs77601902	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	7p15.2	CTD-2227E11.1	rs77601902-T	NR	2E-11		0.0301187	[0.021-0.039] unit increase	Affymetrix [321169] (imputed)	N
782	chr7	25895684	25895685	rs12666961	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-to-hip ratio adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,049 whole genome sequenced individuals, 29,518 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,001 Mylopotamos (founder/genetic isolate) individuals, 867 Pomak (founder/genetic isolate) individuals	206,045 European ancestry individuals	7p15.2	CTD-2227E11.1	rs12666961-T	0.8066	9E-7		0.0506	[0.03-0.071] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
782	chr7	25895684	25895685	rs12666961	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-hip ratio	1,254 whole genome sequenced European ancestry individuals, 3,071 whole genome sequenced individuals, 29,723 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,053 Mylopotamos (founder/genetic isolate) individuals, 879 Pomak (founder/genetic isolate) individuals	206,053 European ancestry individuals	7p15.2	CTD-2227E11.1	rs12666961-T	0.8069	8E-6		0.0458	[0.026-0.066] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
782	chr7	25898722	25898723	rs6961848	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	7p15.2	CTD-2227E11.1	rs6961848-T	NR	4E-8		0.0155247	[0.01-0.021] unit increase	Affymetrix [319769] (imputed)	N
782	chr7	25898722	25898723	rs6961848	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	7p15.2	CTD-2227E11.1	rs6961848-T	NR	4E-9		0.0172455	[0.012-0.023] unit decrease	Affymetrix [321788] (imputed)	N
782	chr7	25901638	25901639	rs12700667	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	7p15.2	intergenic	rs12700667-A	0.7419	1E-17		0.0184	[0.014-0.023] unit decrease	Affymetrix [18391927] (imputed)	N
782	chr7	25901638	25901639	rs12700667	28537267	Sapkota Y	2017-05-24	Nat Commun	Meta-analysis identifies five novel loci associated with endometriosis highlighting key genes involved in hormone metabolism.	Endometriosis	14,926 European ancestry cases, 189,715 European ancestry controls, 2,119 Japanese ancestry cases, 2,143 Japanese ancestry controls	NA	7p15.2	Intergenic	rs12700667-A	0.74	9E-10		1.1	1.07-1.13	Affymetrix, Illumina [up to 6979035] (imputed)	N
782	chr7	25901638	25901639	rs12700667	28537267	Sapkota Y	2017-05-24	Nat Commun	Meta-analysis identifies five novel loci associated with endometriosis highlighting key genes involved in hormone metabolism.	Endometriosis	14,926 European ancestry cases, 189,715 European ancestry controls, 2,119 Japanese ancestry cases, 2,143 Japanese ancestry controls	NA	7p15.2	Intergenic	rs12700667-A	0.74	2E-8	(EA)	1.09	1.06-1.13	Affymetrix, Illumina [up to 6979035] (imputed)	N
782	chr7	25901638	25901639	rs12700667	28333195	Uimari O	2017-04-01	Hum Reprod	Genome-wide genetic analyses highlight mitogen-activated protein kinase (MAPK) signaling in the pathogenesis of endometriosis.	Endometriosis	3,194 European ancestry cases, 7,060 European ancestry controls.	NA	7p15.2	NFE2L3	rs12700667-?	NR	6E-7		1.17	[1.09-1.25]	Illumina [NR] (imputed)	N
782	chr7	25901638	25901639	rs12700667	28333195	Uimari O	2017-04-01	Hum Reprod	Genome-wide genetic analyses highlight mitogen-activated protein kinase (MAPK) signaling in the pathogenesis of endometriosis.	Deep ovarian and/or rectovaginal disease with dense adhesions	1,364 European ancestry cases, 7,060 European ancestry controls.	NA	7p15.2	NFE2L3	rs12700667-?	NR	2E-9		1.32	[1.20-1.46]	Illumina [NR] (imputed)	N
782	chr7	25901638	25901639	rs12700667	23104006	Nyholt DR	2012-10-28	Nat Genet	Genome-wide association meta-analysis identifies new endometriosis risk loci.	Endometriosis	3,181 European ancestry cases, 8,075 European ancestry controls, 1,423 Japanese ancestry cases, 1,318 Japanese ancestry controls	1,044 Japanese ancestry, 4,017 Japanese ancestry controls	7p15.2	intergenic	rs12700667-A	0.744	4E-9		1.18	[1.11-1.25]	Illumina [407632]	N
782	chr7	25901638	25901639	rs12700667	21151130	Painter JN	2010-12-12	Nat Genet	Genome-wide association study identifies a locus at 7p15.2 associated with endometriosis.	Endometriosis	3,194 European ancestry cases, 7,060 European ancestry controls	2,392 European ancestry cases, 2,271 European ancestry controls	7p15.2	intergenic	rs12700667-A	0.74	1E-9		1.2	[1.13-1.27]	Illumina [504723]	N
782	chr7	25908209	25908210	rs10230872	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	7p15.2	NR	rs10230872-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
782	chr7	25926069	25926070	rs11376983	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	7p15.2	CTD-2227E11.1	rs11376983-T	NR	6E-9		0.0176502	[0.012-0.024] unit increase	Affymetrix [321788] (imputed)	N
782	chr7	25929820	25929821	rs140323250	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	7p15.2	CTD-2227E11.1	rs140323250-A	NR	2E-8		0.0484343	[0.032-0.065] unit increase	Affymetrix [319769] (imputed)	N
782	chr7	25930364	25930365	rs73683179	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	7p15.2	NR	rs73683179-T	NR	3E-10		0.0256	[0.018-0.034] unit increase	Affymetrix [9000000] (imputed)	N
782	chr7	25935161	25935162	rs2391170	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	7p15.2		rs2391170-T	0.080541	3E-9		0.024416147	[0.016-0.032] unit increase	Affymetrix [93095623] (imputed)	N
782	chr7	25935161	25935162	rs2391170	32141793	Garman L	2020-03-06	Ocul Immunol Inflamm	Genome-Wide Association Study of Ocular Sarcoidosis Confirms HLA Associations and Implicates Barrier Function and Autoimmunity in African Americans.	Ocular sarcoidosis	260 African American cases, 1,551 African American controls	NA	7p15.2	NR	rs2391170-T	NR	9E-7		1.783	[1.42-2.25]	Illumina [13976150] (imputed)	N
782	chr7	25935746	25935747	rs73081656	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	7p15.2	intergenic	rs73081656-A	0.3342	2E-9		0.0186	[0.013-0.025] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
782	chr7	25936842	25936843	rs12666194	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	7p15.2	CTD-2227E11.1	rs12666194-G	NR	4E-8		0.0475922	[0.031-0.065] unit increase	Affymetrix [321114] (imputed)	N
782	chr7	25937652	25937653	rs60575314	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	7p15.2		rs60575314-T	NR	2E-8		0.0243	[0.016-0.033] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
782	chr7	25938266	25938267	rs4142754	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	7p15.2	CTD-2227E11.1	rs4142754-T	NR	2E-8		0.0168445	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
782	chr7	25938266	25938267	rs4142754	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	7p15.2	CTD-2227E11.1	rs4142754-T	NR	8E-14		0.0233557	[0.017-0.029] unit decrease	Affymetrix [321788] (imputed)	N
782	chr7	25939160	25939161	rs2122823	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	7p15.2	CTD-2227E11.1	rs2122823-T	NR	9E-17		0.0290705	[0.022-0.036] unit increase	Affymetrix [319769] (imputed)	N
782	chr7	25939160	25939161	rs2122823	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	7p15.2	CTD-2227E11.1	rs2122823-T	NR	2E-17		0.0296084	[0.023-0.036] unit increase	Affymetrix [319769] (imputed)	N
782	chr7	25939160	25939161	rs2122823	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	7p15.2	CTD-2227E11.1	rs2122823-T	NR	2E-19		0.0327006	[0.026-0.04] unit decrease	Affymetrix [321788] (imputed)	N
782	chr7	25939160	25939161	rs2122823	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	7p15.2	CTD-2227E11.1	rs2122823-T	NR	2E-8		0.019705	[0.013-0.027] unit decrease	Affymetrix [321016] (imputed)	N
782	chr7	25939160	25939161	rs2122823	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	7p15.2	NR	rs2122823-?	NR	4E-17				Affymetrix [~ 8270000] (imputed)	N
782	chr7	25939160	25939161	rs2122823	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	7p15.2	NR	rs2122823-?	NR	9E-9				Affymetrix [~ 8270000] (imputed)	N
782	chr7	25939160	25939161	rs2122823	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-hip ratio	1,254 whole genome sequenced European ancestry individuals, 3,071 whole genome sequenced individuals, 29,723 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,053 Mylopotamos (founder/genetic isolate) individuals, 879 Pomak (founder/genetic isolate) individuals	206,053 European ancestry individuals	7p15.2	CTD-2227E11.1	rs2122823-T	0.209	3E-6		0.0465	[0.027-0.066] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
782	chr7	25946563	25946564	rs67978834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large HDL	115,082 European ancestry individuals	NA	7p15.2		rs67978834-T	0.824427	7E-9		0.0301605	[0.02-0.04] unit increase	NR [11722792] (imputed)	N
782	chr7	25950544	25950545	rs10261878	23583978	Monda KL	2013-04-14	Nat Genet	A meta-analysis identifies new loci associated with body mass index in individuals of African ancestry.	Body mass index	37,956 African American individuals, 1,188 Nigerian ancestry individuals	27,661 African America/Afro-Caribbean individuals, 4,607 Sub-Saharan African ancestry individuals, 123,706 European ancestry inidividuals	7p15.2	NFE2L3, MIR148A	rs10261878-C	0.94	1E-10		0.032	[0.022-0.042] unit increase	Affymetrix, Illumina [3283202] (imputed)	N
782	chr7	25950879	25950880	rs28612846	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	7p15.2	NR	rs28612846-G	0.743341	5E-8		0.0155678	[0.0093-0.0218] unit increase	Affymetrix [16580851] (imputed)	N
782	chr7	25952058	25952059	rs35274205	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	7p15.2	CTD-2227E11.1	rs35274205-A	NR	2E-9		0.0202931	[0.014-0.027] unit decrease	Affymetrix [321788] (imputed)	N
783	chr7	25962869	25962870	rs17319425	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	7p15.2	NR	rs17319425-T	NR	1E-14		0.0306	[0.023-0.038] unit decrease	Affymetrix [9000000] (imputed)	N
783	chr7	25964280	25964281	rs36084433	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	7p15.2		rs36084433-A	NR	3E-10		0.0152	[0.01-0.02] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
783	chr7	25965758	25965759	rs7786102	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	7p15.2	MIR148A	rs7786102-?	NR	8E-29		0.0323	[0.027-0.037] unit increase	Affymetrix [5701386] (imputed)	N
783	chr7	25971859	25971860	rs12539793	26422391	Yellin JL	2015-09-28	J Pediatr Orthop	Candidate Loci are Revealed by an Initial Genome-wide Association Study of Juvenile Osteochondritis Dissecans.	Juvenile osteochondritis dissecans	209 European ancestry cases, 1,855 European ancestry controls	NA	7p15.2	MIR148A	rs12539793-?		1E-6		2.113	[NR]	Illumina [NR]	N
783	chr7	25983399	25983400	rs56001710	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Tyrosine levels	114,913 European ancestry individuals	NA	7p15.2		rs56001710-A	0.419474	7E-11		0.0278766	[0.02-0.036] unit increase	NR [11722792] (imputed)	N
783	chr7	25983399	25983400	rs56001710	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	7p15.2		rs56001710-A	0.419422	6E-12		0.0278773	[0.02-0.036] unit increase	NR [11722792] (imputed)	N
783	chr7	25983399	25983400	rs56001710	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	7p15.2		rs56001710-A	0.419417	1E-11		0.0278497	[0.02-0.036] unit increase	NR [11722792] (imputed)	N
783	chr7	25983399	25983400	rs56001710	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	7p15.2		rs56001710-A	0.419417	2E-11		0.0275302	[0.019-0.036] unit increase	NR [11722792] (imputed)	N
783	chr7	25983399	25983400	rs56001710	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	7p15.2		rs56001710-A	0.419417	2E-10		0.0257889	[0.018-0.034] unit increase	NR [11722792] (imputed)	N
783	chr7	25983399	25983400	rs56001710	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very small VLDL	115,082 European ancestry individuals	NA	7p15.2		rs56001710-A	0.419417	4E-10		0.0262328	[0.018-0.034] unit increase	NR [11722792] (imputed)	N
783	chr7	25983399	25983400	rs56001710	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large VLDL	115,082 European ancestry individuals	NA	7p15.2		rs56001710-A	0.419417	1E-13		0.0306438	[0.023-0.039] unit increase	NR [11722792] (imputed)	N
783	chr7	25983399	25983400	rs56001710	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small VLDL	115,082 European ancestry individuals	NA	7p15.2		rs56001710-A	0.419417	4E-13		0.0301553	[0.022-0.038] unit increase	NR [11722792] (imputed)	N
783	chr7	25983399	25983400	rs56001710	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small LDL	115,082 European ancestry individuals	NA	7p15.2		rs56001710-A	0.419417	7E-11		0.0272794	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
783	chr7	25983399	25983400	rs56001710	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small HDL	115,082 European ancestry individuals	NA	7p15.2		rs56001710-A	0.419417	2E-13		0.0307072	[0.023-0.039] unit increase	NR [11722792] (imputed)	N
783	chr7	25983399	25983400	rs56001710	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium VLDL	115,082 European ancestry individuals	NA	7p15.2		rs56001710-A	0.419417	8E-10		0.0256704	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
783	chr7	25983399	25983400	rs56001710	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large VLDL	115,082 European ancestry individuals	NA	7p15.2		rs56001710-A	0.419417	2E-11		0.0278217	[0.02-0.036] unit increase	NR [11722792] (imputed)	N
783	chr7	25983399	25983400	rs56001710	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	7p15.2		rs56001710-A	0.419417	3E-15		0.0328077	[0.025-0.041] unit increase	NR [11722792] (imputed)	N
783	chr7	25983399	25983400	rs56001710	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in VLDL	115,082 European ancestry individuals	NA	7p15.2		rs56001710-A	0.419417	3E-13		0.0302886	[0.022-0.038] unit increase	NR [11722792] (imputed)	N
783	chr7	25983399	25983400	rs56001710	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in HDL	115,082 European ancestry individuals	NA	7p15.2		rs56001710-A	0.419417	2E-13		0.0309449	[0.023-0.039] unit increase	NR [11722792] (imputed)	N
783	chr7	25983399	25983400	rs56001710	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total triglycerides levels	115,082 European ancestry individuals	NA	7p15.2		rs56001710-A	0.419417	3E-13		0.0303073	[0.022-0.038] unit increase	NR [11722792] (imputed)	N
783	chr7	25983399	25983400	rs56001710	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large VLDL	115,082 European ancestry individuals	NA	7p15.2		rs56001710-A	0.419417	1E-11		0.0279925	[0.02-0.036] unit increase	NR [11722792] (imputed)	N
783	chr7	25983399	25983400	rs56001710	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large VLDL	115,082 European ancestry individuals	NA	7p15.2		rs56001710-A	0.419417	7E-10		0.0256605	[0.018-0.034] unit increase	NR [11722792] (imputed)	N
783	chr7	25983399	25983400	rs56001710	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	7p15.2		rs56001710-A	0.419417	1E-14		0.0320645	[0.024-0.04] unit increase	NR [11722792] (imputed)	N
783	chr7	25983399	25983400	rs56001710	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	7p15.2		rs56001710-A	0.41941	1E-12		0.0285051	[0.021-0.036] unit increase	NR [11722792] (imputed)	N
783	chr7	25983399	25983400	rs56001710	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	7p15.2		rs56001710-A	0.41941	1E-12		0.0293876	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
783	chr7	25983399	25983400	rs56001710	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to monounsaturated fatty acids	115,006 European ancestry individuals	NA	7p15.2		rs56001710-A	0.41941	8E-13		0.0295864	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
783	chr7	25983399	25983400	rs56001710	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	7p15.2		rs56001710-A	0.41941	5E-16		0.0335314	[0.025-0.042] unit decrease	NR [11722792] (imputed)	N
783	chr7	25983399	25983400	rs56001710	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of monounsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	7p15.2		rs56001710-A	0.41941	8E-12		0.028236	[0.02-0.036] unit increase	NR [11722792] (imputed)	N
783	chr7	25983399	25983400	rs56001710	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of linoleic acid to total fatty acids	115,006 European ancestry individuals	NA	7p15.2		rs56001710-A	0.41941	9E-15		0.0322458	[0.024-0.04] unit decrease	NR [11722792] (imputed)	N
783	chr7	25983399	25983400	rs56001710	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large VLDL	115,082 European ancestry individuals	NA	7p15.2		rs56001710-A	0.419417	2E-10		0.0264706	[0.018-0.035] unit increase	NR [11722792] (imputed)	N
783	chr7	25983399	25983400	rs56001710	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large VLDL	115,082 European ancestry individuals	NA	7p15.2		rs56001710-A	0.419417	5E-10		0.0257963	[0.018-0.034] unit increase	NR [11722792] (imputed)	N
783	chr7	25983399	25983400	rs56001710	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	7p15.2		rs56001710-A	0.419417	6E-15		0.0322248	[0.024-0.04] unit increase	NR [11722792] (imputed)	N
783	chr7	25983399	25983400	rs56001710	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Monounsaturated fatty acid levels	115,006 European ancestry individuals	NA	7p15.2		rs56001710-A	0.41941	3E-10		0.0268641	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
783	chr7	25983399	25983400	rs56001710	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	7p15.2		rs56001710-A	0.419444	8E-12		0.0285592	[0.02-0.037] unit decrease	NR [11722792] (imputed)	N
783	chr7	25983399	25983400	rs56001710	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	7p15.2		rs56001710-A	0.419631	1E-9		0.0261407	[0.018-0.035] unit decrease	NR [11722792] (imputed)	N
783	chr7	25983399	25983400	rs56001710	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	7p15.2		rs56001710-A	0.419417	1E-8		0.0243107	[0.016-0.033] unit decrease	NR [11722792] (imputed)	N
783	chr7	25983399	25983400	rs56001710	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	7p15.2		rs56001710-A	0.419417	1E-9		0.0252702	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
783	chr7	25983399	25983400	rs56001710	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	7p15.2		rs56001710-A	0.419417	1E-8		0.0236301	[0.015-0.032] unit increase	NR [11722792] (imputed)	N
783	chr7	25983399	25983400	rs56001710	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large VLDL particles	115,082 European ancestry individuals	NA	7p15.2		rs56001710-A	0.419417	1E-11		0.0279795	[0.02-0.036] unit increase	NR [11722792] (imputed)	N
783	chr7	25983399	25983400	rs56001710	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large VLDL particles	115,082 European ancestry individuals	NA	7p15.2		rs56001710-A	0.419417	4E-10		0.0260593	[0.018-0.034] unit increase	NR [11722792] (imputed)	N
783	chr7	25983399	25983400	rs56001710	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of chylomicrons and extremely large VLDL particles	115,082 European ancestry individuals	NA	7p15.2		rs56001710-A	0.419417	2E-14		0.0316111	[0.023-0.04] unit increase	NR [11722792] (imputed)	N
783	chr7	25983399	25983400	rs56001710	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	7p15.2		rs56001710-A	0.419417	2E-15		0.0320336	[0.024-0.04] unit decrease	NR [11722792] (imputed)	N
783	chr7	25983399	25983400	rs56001710	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	7p15.2		rs56001710-A	0.419417	3E-12		0.0290095	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
783	chr7	25983399	25983400	rs56001710	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	7p15.2		rs56001710-A	0.419417	4E-13		0.0297506	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
783	chr7	25983399	25983400	rs56001710	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	7p15.2		rs56001710-A	0.419417	1E-11		0.0282202	[0.02-0.036] unit increase	NR [11722792] (imputed)	N
783	chr7	25983399	25983400	rs56001710	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	7p15.2		rs56001710-A	0.419417	8E-16		0.0327687	[0.025-0.041] unit decrease	NR [11722792] (imputed)	N
783	chr7	25983399	25983400	rs56001710	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	7p15.2		rs56001710-A	0.419417	3E-13		0.0302304	[0.022-0.038] unit increase	NR [11722792] (imputed)	N
783	chr7	25983399	25983400	rs56001710	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for VLDL particles	115,082 European ancestry individuals	NA	7p15.2		rs56001710-A	0.419417	7E-12		0.0275497	[0.02-0.035] unit increase	NR [11722792] (imputed)	N
783	chr7	25987128	25987129	rs4389834	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	111,667 East Asian ancestry individuals	NA	7p15.2		rs4389834-A	0.50326	1E-8		0.0229447	[0.015-0.031] unit increase	Illumina [13471903] (imputed)	N
783	chr7	25987128	25987129	rs4389834	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Triglyceride levels	105,597 Japanese ancestry individuals	NA	7p15.2	NPVF, MIR148A	rs4389834-?	NR	2E-9		0.02606	[0.018-0.035] unit increase novel	Illumina [6108953] (imputed)	N
783	chr7	25990596	25990597	rs4000713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to omega-3 fatty acids	115,006 European ancestry individuals	NA	7p15.2		rs4000713-G	0.704584	4E-12		0.0302187	[0.022-0.039] unit decrease	NR [11722792] (imputed)	N
783	chr7	25990596	25990597	rs4000713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-3 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	7p15.2		rs4000713-G	0.704584	8E-10		0.0267482	[0.018-0.035] unit increase	NR [11722792] (imputed)	N
783	chr7	25990596	25990597	rs4000713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-3 fatty acid levels	115,006 European ancestry individuals	NA	7p15.2		rs4000713-G	0.704584	8E-11		0.028225	[0.02-0.037] unit increase	NR [11722792] (imputed)	N
783	chr7	25991410	25991411	rs56762262	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-to-hip ratio adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,049 whole genome sequenced individuals, 29,518 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,001 Mylopotamos (founder/genetic isolate) individuals, 867 Pomak (founder/genetic isolate) individuals	206,045 European ancestry individuals	7p15.2	MIR148A	rs56762262-T	0.0524	8E-6		0.0882	[0.05-0.127] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
783	chr7	25991825	25991826	rs4722551	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	7p15.2		rs4722551-T	0.841858	1E-17		0.0469196	[0.036-0.058] unit increase	NR [11722792] (imputed)	N
783	chr7	25991825	25991826	rs4722551	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	7p15.2		rs4722551-T	0.8419	1E-23		0.0546961	[0.044-0.065] unit increase	NR [11722792] (imputed)	N
783	chr7	25991825	25991826	rs4722551	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	7p15.2		rs4722551-T	0.8419	1E-22		0.0532451	[0.043-0.064] unit increase	NR [11722792] (imputed)	N
783	chr7	25991825	25991826	rs4722551	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	7p15.2		rs4722551-T	0.8419	1E-21		0.0508971	[0.04-0.061] unit increase	NR [11722792] (imputed)	N
783	chr7	25991825	25991826	rs4722551	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	7p15.2		rs4722551-T	0.8419	2E-14		0.0425566	[0.032-0.053] unit increase	NR [11722792] (imputed)	N
783	chr7	25991825	25991826	rs4722551	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	7p15.2		rs4722551-T	0.8419	4E-13		0.0399182	[0.029-0.051] unit increase	NR [11722792] (imputed)	N
783	chr7	25991825	25991826	rs4722551	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium HDL	115,082 European ancestry individuals	NA	7p15.2		rs4722551-T	0.8419	5E-14		0.0418072	[0.031-0.053] unit increase	NR [11722792] (imputed)	N
783	chr7	25991825	25991826	rs4722551	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	7p15.2		rs4722551-T	0.8419	2E-12		0.0384782	[0.028-0.049] unit increase	NR [11722792] (imputed)	N
783	chr7	25991825	25991826	rs4722551	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	7p15.2		rs4722551-T	0.8419	8E-17		0.0451687	[0.035-0.056] unit decrease	NR [11722792] (imputed)	N
783	chr7	25991825	25991826	rs4722551	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small LDL	115,082 European ancestry individuals	NA	7p15.2		rs4722551-T	0.8419	4E-9		0.0332076	[0.022-0.044] unit decrease	NR [11722792] (imputed)	N
783	chr7	25991825	25991826	rs4722551	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	7p15.2		rs4722551-T	0.8419	6E-14		0.0421048	[0.031-0.053] unit decrease	NR [11722792] (imputed)	N
783	chr7	25991825	25991826	rs4722551	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	7p15.2		rs4722551-T	0.8419	6E-21		0.0510971	[0.04-0.062] unit decrease	NR [11722792] (imputed)	N
783	chr7	25991825	25991826	rs4722551	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	7p15.2		rs4722551-T	0.8419	8E-20		0.0489604	[0.038-0.059] unit decrease	NR [11722792] (imputed)	N
783	chr7	25991825	25991826	rs4722551	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small LDL	115,082 European ancestry individuals	NA	7p15.2		rs4722551-T	0.8419	2E-13		0.0413224	[0.03-0.052] unit decrease	NR [11722792] (imputed)	N
783	chr7	25991825	25991826	rs4722551	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	7p15.2		rs4722551-T	0.8419	1E-9		0.0344549	[0.023-0.046] unit decrease	NR [11722792] (imputed)	N
783	chr7	25991825	25991826	rs4722551	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in LDL	115,082 European ancestry individuals	NA	7p15.2		rs4722551-T	0.8419	5E-11		0.036766	[0.026-0.048] unit decrease	NR [11722792] (imputed)	N
783	chr7	25991825	25991826	rs4722551	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Clinical LDL cholesterol levels	115,082 European ancestry individuals	NA	7p15.2		rs4722551-T	0.8419	3E-8		0.0311136	[0.02-0.042] unit decrease	NR [11722792] (imputed)	N
783	chr7	25991825	25991826	rs4722551	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	7p15.2		rs4722551-T	0.841858	2E-21		0.0514545	[0.041-0.062] unit decrease	NR [11722792] (imputed)	N
783	chr7	25991825	25991826	rs4722551	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	7p15.2		rs4722551-T	0.8419	4E-18		0.0483246	[0.037-0.059] unit decrease	NR [11722792] (imputed)	N
783	chr7	25991825	25991826	rs4722551	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	7p15.2		rs4722551-T	0.8419	3E-13		0.0404047	[0.03-0.051] unit decrease	NR [11722792] (imputed)	N
783	chr7	25991825	25991826	rs4722551	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	7p15.2		rs4722551-T	0.8419	3E-22		0.0512622	[0.041-0.062] unit decrease	NR [11722792] (imputed)	N
783	chr7	25991825	25991826	rs4722551	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	7p15.2		rs4722551-T	0.841893	4E-16		0.0440661	[0.033-0.055] unit decrease	NR [11722792] (imputed)	N
783	chr7	25991825	25991826	rs4722551	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	7p15.2		rs4722551-T	0.842092	2E-11		0.0383641	[0.027-0.05] unit decrease	NR [11722792] (imputed)	N
783	chr7	25991825	25991826	rs4722551	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium VLDL	115,082 European ancestry individuals	NA	7p15.2		rs4722551-T	0.8419	2E-8		0.0315485	[0.021-0.043] unit decrease	NR [11722792] (imputed)	N
783	chr7	25991825	25991826	rs4722551	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	7p15.2		rs4722551-T	0.841858	5E-20		0.0494591	[0.039-0.06] unit decrease	NR [11722792] (imputed)	N
783	chr7	25991825	25991826	rs4722551	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	7p15.2		rs4722551-T	0.8419	6E-23		0.0540571	[0.043-0.065] unit decrease	NR [11722792] (imputed)	N
783	chr7	25991825	25991826	rs4722551	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	7p15.2		rs4722551-T	0.8419	5E-19		0.0495561	[0.039-0.06] unit decrease	NR [11722792] (imputed)	N
783	chr7	25991825	25991826	rs4722551	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	7p15.2		rs4722551-T	0.8419	5E-22		0.0512662	[0.041-0.062] unit decrease	NR [11722792] (imputed)	N
783	chr7	25991825	25991826	rs4722551	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	7p15.2		rs4722551-T	0.841893	1E-13		0.0410436	[0.03-0.052] unit decrease	NR [11722792] (imputed)	N
783	chr7	25991825	25991826	rs4722551	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	7p15.2		rs4722551-T	0.842092	6E-11		0.0370388	[0.026-0.048] unit decrease	NR [11722792] (imputed)	N
783	chr7	25991825	25991826	rs4722551	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	7p15.2		rs4722551-C	NR	4E-33		0.0375	[0.031-0.044] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
783	chr7	25991825	25991826	rs4722551	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	7p15.2		rs4722551-C	NR	1E-17		0.0272	[0.021-0.033] unit increase	Affymetrix, Illumina [20521447] (imputed)	N
783	chr7	25991825	25991826	rs4722551	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	7p15.2	NR	rs4722551-C	NR	2E-32		0.0388	[0.032-0.045] unit decrease	Affymetrix [9000000] (imputed)	N
783	chr7	25991825	25991826	rs4722551	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	7p15.2	NR	rs4722551-C	NR	2E-18		0.0288	[0.022-0.035] unit increase	Affymetrix [9000000] (imputed)	N
783	chr7	25991825	25991826	rs4722551	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	7p15.2	NR	rs4722551-C	NR	5E-25		0.0339	[0.027-0.04] unit increase	Affymetrix [9000000] (imputed)	N
783	chr7	25991825	25991826	rs4722551	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	7p15.2	NR	rs4722551-C	NR	4E-24		0.0333	[0.027-0.04] unit increase	Affymetrix [9000000] (imputed)	N
783	chr7	25991825	25991826	rs4722551	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	7p15.2	NR	rs4722551-T	0.841323	6E-37		0.0332192	[0.028-0.038] unit decrease	Affymetrix [15000001]	N
783	chr7	25991825	25991826	rs4722551	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	7p15.2	NFE2L3	rs4722551-T	0.841407	1E-42		0.0372104	[0.032-0.043] unit increase	Affymetrix [NR] (imputed)	N
783	chr7	25991825	25991826	rs4722551	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	7p15.2	NFE2L3	rs4722551-T	0.841406	1E-17		0.0243791	[0.019-0.03] unit decrease	Affymetrix [NR] (imputed)	N
783	chr7	25991825	25991826	rs4722551	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	7p15.2	NFE2L3	rs4722551-T	0.841351	1E-19		0.0257538	[0.02-0.031] unit decrease	Affymetrix [NR] (imputed)	N
783	chr7	25991825	25991826	rs4722551	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	7p15.2	RPL7AP38	rs4722551-?	NR	2E-19		0.0315	[0.025-0.038] unit increase	Affymetrix [5701386] (imputed)	N
783	chr7	25991825	25991826	rs4722551	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	LDL cholesterol levels	up to 23,353 African ancestry individuals, 13,171 Asian ancestry individuals, up to 82,522 European ancestry individuals, 6,646 Hispanic individuals	NA	7p15.2		rs4722551-T	0.847	5E-7		1.2357	[0.75-1.72] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
783	chr7	25991825	25991826	rs4722551	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	7p15.2	MIR148A, NFE2L3	rs4722551-C	NR	4E-11				Affymetrix, Illumina [NR] (imputed)	N
783	chr7	25991825	25991826	rs4722551	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	7p15.2	MIR148A, NFE2L3	rs4722551-C	NR	2E-8	(EA)			Affymetrix, Illumina [NR] (imputed)	N
783	chr7	25991825	25991826	rs4722551	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	7p15.2	MIR148A, NFE2L3	rs4722551-C	NR	4E-12				Affymetrix, Illumina [NR] (imputed)	N
783	chr7	25991825	25991826	rs4722551	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	7p15.2	MIR148A, NFE2L3	rs4722551-C	NR	2E-9	(EA)			Affymetrix, Illumina [NR] (imputed)	N
783	chr7	25991825	25991826	rs4722551	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	7p15.2	MIR148A, NFE2L3	rs4722551-C	NR	6E-6	(EA)	0.015	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
783	chr7	25991825	25991826	rs4722551	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	7p15.2	MIR148A, NFE2L3	rs4722551-C	NR	4E-8		0.016	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
783	chr7	25991825	25991826	rs4722551	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	7p15.2	MIR148A, NFE2L3	rs4722551-C	NR	9E-16				Affymetrix, Illumina [NR] (imputed)	N
783	chr7	25991825	25991826	rs4722551	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	7p15.2	MIR148A, NFE2L3	rs4722551-C	NR	2E-12	(EA)			Affymetrix, Illumina [NR] (imputed)	N
783	chr7	25991825	25991826	rs4722551	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	7p15.2	MIR148A, NFE2L3	rs4722551-C	NR	7E-13	(EA)			Affymetrix, Illumina [NR] (imputed)	N
783	chr7	25991825	25991826	rs4722551	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	7p15.2	MIR148A, NFE2L3	rs4722551-C	NR	2E-18				Affymetrix, Illumina [NR] (imputed)	N
783	chr7	25991825	25991826	rs4722551	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	7p15.2	MIR148A, NFE2L3	rs4722551-C	NR	3E-11		1.447	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
783	chr7	25991825	25991826	rs4722551	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	7p15.2	MIR148A, NFE2L3	rs4722551-C	NR	1E-8	(EA)	1.378	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
783	chr7	25991825	25991826	rs4722551	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	7p15.2	MIR148A, NFE2L3	rs4722551-C	NR	3E-7		1.435	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
783	chr7	25991825	25991826	rs4722551	30670697	Kilpelainen TO	2019-01-22	Nat Commun	Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity.	LDL cholesterol x physical activity interaction (2df test)	7,260 African American inactive individuals, 12,761 African American active individuals, 2,740 Asian ancestry inactive individuals, 3,615 Asian ancestry active individuals, 22,378 European ancestry inactive individuals, 55,310 European ancestry active individuals, 2,163 Hispanic or Latin American inactive individuals, 3,461 Hispanic or Latin American active individuals	571 African American inactive individuals, 1,521 African American active individuals, 1,217 South African Black ancestry inactive individuals, 389 South African Black ancestry active individuals, 2,495 East Asian ancestry inactive individuals, 1,947 East Asian ancestry active individuals,  724 South Asian ancestry inactive individuals, 1,425 South Asian ancestry active individuals,  33,796 European ancestry inactive individuals, 50,812 European ancestry active individuals, 2,578 Hispanic inactive individuals, 8,661 Hispanic active individuals	7p15.2	NR	rs4722551-T	0.8475	4E-11				Affymetrix, Illumina [at least 2500000] (imputed)	N
783	chr7	25991825	25991826	rs4722551	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	7p15.2	intergenic	rs4722551-T	0.8459	7E-9		0.0218	[0.014-0.029] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
783	chr7	25991825	25991826	rs4722551	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	7p15.2	intergenic	rs4722551-T	0.8459	9E-18		0.0324	[0.025-0.04] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
783	chr7	25991825	25991826	rs4722551	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7p15.2	NR	rs4722551-T	NR	2E-6		0.026	unit increase	Affymetrix [at least 7091467] (imputed)	N
783	chr7	25991825	25991826	rs4722551	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7p15.2	NR	rs4722551-T	0.843	6E-6	(EA)	0.027	unit increase	Affymetrix [at least 7091467] (imputed)	N
783	chr7	25991825	25991826	rs4722551	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7p15.2	NR	rs4722551-T	NR	3E-10		0.039	unit decrease	Affymetrix [at least 7091467] (imputed)	N
783	chr7	25991825	25991826	rs4722551	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7p15.2	NR	rs4722551-T	0.843	5E-9	(EA)	0.038	unit decrease	Affymetrix [at least 7091467] (imputed)	N
783	chr7	25991825	25991826	rs4722551	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7p15.2	NR	rs4722551-T	NR	8E-17		0.052	unit decrease	Affymetrix [at least 7091467] (imputed)	N
783	chr7	25991825	25991826	rs4722551	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7p15.2	NR	rs4722551-T	0.843	5E-15	(EA)	0.052	unit decrease	Affymetrix [at least 7091467] (imputed)	N
783	chr7	25991825	25991826	rs4722551	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Triglycerides	94,595 European ancestry individuals	93,982 European ancestry individuals	7p15.2	MIR148A	rs4722551-C	0.2	9E-11		0.023	[NR] mg/dL increase	NR [NR] (imputed)	N
783	chr7	25991825	25991826	rs4722551	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	7p15.2	MIR148A	rs4722551-C	0.2	4E-14		0.039	[NR] unit increase	NR [NR] (imputed)	N
783	chr7	25991825	25991826	rs4722551	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	7p15.2	MIR148A	rs4722551-C	0.2	7E-9		0.029	[NR] unit increase	NR [NR] (imputed)	N
783	chr7	25992323	25992323	rs10642257	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	7p15.2		rs10642257-A	0.839842	2E-17		0.045331	[0.035-0.056] unit increase	NR [11722792] (imputed)	N
783	chr7	25992323	25992323	rs10642257	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	7p15.2		rs10642257-A	0.839842	4E-15		0.042587	[0.032-0.053] unit increase	NR [11722792] (imputed)	N
783	chr7	25992323	25992323	rs10642257	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	7p15.2		rs10642257-A	0.839842	5E-23		0.0531055	[0.043-0.064] unit decrease	NR [11722792] (imputed)	N
783	chr7	25992323	25992323	rs10642257	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	7p15.2		rs10642257-A	0.839842	2E-11		0.037734	[0.027-0.049] unit decrease	NR [11722792] (imputed)	N
783	chr7	25992323	25992323	rs10642257	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	7p15.2		rs10642257-A	0.839842	9E-13		0.0382985	[0.028-0.049] unit increase	NR [11722792] (imputed)	N
783	chr7	25992323	25992323	rs10642257	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	7p15.2		rs10642257-A	0.839842	1E-12		0.038865	[0.028-0.05] unit increase	NR [11722792] (imputed)	N
783	chr7	25992323	25992323	rs10642257	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	7p15.2		rs10642257-A	0.839842	5E-23		0.0529687	[0.042-0.063] unit decrease	NR [11722792] (imputed)	N
783	chr7	25992323	25992323	rs10642257	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	7p15.2		rs10642257-A	0.839842	4E-9		0.0313913	[0.021-0.042] unit decrease	NR [11722792] (imputed)	N
783	chr7	25992323	25992323	rs10642257	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	7p15.2		rs10642257-A	0.839842	1E-18		0.0473398	[0.037-0.058] unit decrease	NR [11722792] (imputed)	N
783	chr7	25992323	25992323	rs10642257	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	7p15.2		rs10642257-A	0.839842	9E-18		0.0460183	[0.036-0.057] unit decrease	NR [11722792] (imputed)	N
783	chr7	25992323	25992323	rs10642257	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large LDL	115,082 European ancestry individuals	NA	7p15.2		rs10642257-A	0.839842	5E-11		0.0364503	[0.026-0.047] unit decrease	NR [11722792] (imputed)	N
783	chr7	25992323	25992323	rs10642257	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	7p15.2		rs10642257-A	0.839842	9E-15		0.0421371	[0.031-0.053] unit increase	NR [11722792] (imputed)	N
783	chr7	25992323	25992323	rs10642257	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in IDL	115,082 European ancestry individuals	NA	7p15.2		rs10642257-A	0.839842	4E-9		0.0321389	[0.021-0.043] unit decrease	NR [11722792] (imputed)	N
783	chr7	25992323	25992323	rs10642257	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	7p15.2		rs10642257-A	0.839842	6E-9		0.0327155	[0.022-0.044] unit increase	NR [11722792] (imputed)	N
783	chr7	25992323	25992323	rs10642257	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in IDL	115,082 European ancestry individuals	NA	7p15.2		rs10642257-A	0.839842	2E-9		0.0328652	[0.022-0.044] unit decrease	NR [11722792] (imputed)	N
783	chr7	25992323	25992323	rs10642257	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in IDL	115,082 European ancestry individuals	NA	7p15.2		rs10642257-A	0.839842	6E-9		0.0316615	[0.021-0.042] unit decrease	NR [11722792] (imputed)	N
783	chr7	25992323	25992323	rs10642257	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	7p15.2		rs10642257-A	0.839842	9E-12		0.0366434	[0.026-0.047] unit decrease	NR [11722792] (imputed)	N
783	chr7	25992323	25992323	rs10642257	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	7p15.2		rs10642257-A	0.839842	8E-12		0.0374806	[0.027-0.048] unit decrease	NR [11722792] (imputed)	N
783	chr7	25992323	25992323	rs10642257	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	7p15.2		rs10642257-A	0.839842	4E-14		0.0400685	[0.03-0.05] unit decrease	NR [11722792] (imputed)	N
783	chr7	25992323	25992323	rs10642257	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	7p15.2		rs10642257-A	0.839842	2E-12		0.038714	[0.028-0.049] unit decrease	NR [11722792] (imputed)	N
783	chr7	25992323	25992323	rs10642257	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in IDL	115,082 European ancestry individuals	NA	7p15.2		rs10642257-A	0.839842	5E-9		0.0319827	[0.021-0.043] unit decrease	NR [11722792] (imputed)	N
783	chr7	25992323	25992323	rs10642257	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	7p15.2		rs10642257-AAGGCC	NR	2E-13		0.0229	[0.017-0.029] unit increase	Affymetrix, Illumina [20536134] (imputed)	N
783	chr7	25992509	25992510	rs7789194	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	7p15.2		rs7789194-C	NR	8E-14		0.0151	[0.011-0.019] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
783	chr7	25994744	25994745	rs76473094	34404248	Tsao YC	2021-08-18	Cephalalgia	Genome-wide association study reveals susceptibility loci for self-reported headache in a large community-based Asian population.	Headache	2,084 Taiwanese ancestry cases, 11,822 Taiwanese ancestry controls	NA	7p15.2		rs76473094-C	0.001	8E-8		4.518	[2.47-8.262]	Affymetrix [7842171] (imputed)	N
783	chr7	25995062	25995063	rs4574742	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Triglyceride levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	7p15.2	MIR148A, NFE2L3	rs4574742-?		6E-10		0.024	[0.016-0.032] unit increase	Illumina [31500000] (imputed)	N
783	chr7	25997535	25997536	rs4719841	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Total cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	7p15.2	MIR148A, NFE2L3	rs4719841-?		2E-9		0.0217	[0.015-0.029] unit decrease	Illumina [31500000] (imputed)	N
783	chr7	25997535	25997536	rs4719841	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Low density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	7p15.2	MIR148A, NFE2L3	rs4719841-?		3E-15		0.0338	[0.025-0.042] unit decrease	Illumina [31500000] (imputed)	N
783	chr7	25997535	25997536	rs4719841	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p15.2	NR	rs4719841-G	0.452121	1E-11				Affymetrix, Illumina [24588908] (imputed)	N
783	chr7	25997535	25997536	rs4719841	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Triglyceride levels	28,183 East Asian ancestry individuals, 177,861 European ancestry individuals	10,857 Chinese ancestry individuals	7p15.2	MIR148A	rs4719841-A	0.617	9E-13	(Trans-ethnic initial)	0.0232	[0.017-0.03] unit decrease (EA Beta values)	Affymetrix, Illumina [up to 1900000] (imputed)	N
783	chr7	26008051	26008052	rs745580	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	7p15.2	NFE2L3	rs745580-A	0.438	3E-7	(Dinner intake, adj EER )	0.04	[NR] kcal increase	Illumina [899892]	N
783	chr7	26014641	26014642	rs6970673	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Total cholesterol levels	128,305 Japanese ancestry individuals	NA	7p15.2	MIR148A, NFE2L3	rs6970673-?	NR	1E-8		0.02274	[0.015-0.031] unit decrease novel	Illumina [6108953] (imputed)	N
783	chr7	26015391	26015392	rs28537499	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Low density lipoprotein cholesterol levels	72,866 Japanese ancestry individuals	NA	7p15.2	MIR148A, NFE2L3	rs28537499-?	NR	2E-10		0.03394	[0.024-0.044] unit decrease novel	Illumina [6108953] (imputed)	N
783	chr7	26022413	26022414	rs7780562	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	135,808 East Asian ancestry individuals	NA	7p15.2		rs7780562-C	0.678117	1E-8		0.0226848	[0.015-0.03] unit decrease	Illumina [13476599] (imputed)	N
783	chr7	26022413	26022414	rs7780562	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	72,866 East Asian ancestry individuals	NA	7p15.2		rs7780562-C	0.678565	9E-15		0.0411775	[0.031-0.052] unit decrease	Illumina [13461863] (imputed)	N
783	chr7	26022413	26022414	rs7780562	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	7p15.2		rs7780562-C	NR	4E-62		0.0381	[0.034-0.043] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
783	chr7	26022413	26022414	rs7780562	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	133,471 East Asian ancestry individuals	NA	7p15.2		rs7780562-C	0.677654	4E-17		0.032421	[0.025-0.04] unit increase	Illumina [13476165] (imputed)	N
783	chr7	26022413	26022414	rs7780562	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	7p15.2	MIR148A	rs7780562-A	0.205321	1E-59		0.0107855	[0.0095-0.0121] unit decrease	Affymetrix [13995440] (imputed)	N
783	chr7	26022413	26022414	rs7780562	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Gamma glutamyl transferase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	7p15.2	MIR148A, NFE2L3	rs7780562-?		1E-13		0.0353	[0.026-0.045] unit increase	Illumina [31500000] (imputed)	N
783	chr7	26022413	26022414	rs7780562	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	7p15.2	NR	rs7780562-C	0.793536	3E-9		0.00832261	[0.0055-0.0111] unit increase	Affymetrix [16582621] (imputed)	N
783	chr7	26022413	26022414	rs7780562	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	7p15.2	NR	rs7780562-C	0.793536	2E-7		0.00795631	[0.005-0.011] unit increase	Affymetrix [16582614] (imputed)	N
783	chr7	26022413	26022414	rs7780562	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Gamma glutamyl transferase levels	118,309 Japanese ancestry individuals	NA	7p15.2	MIR148A, NFE2L3	rs7780562-?	NR	2E-12		0.03415	[0.025-0.044] unit increase novel	Illumina [6108953] (imputed)	N
783	chr7	26029485	26029486	rs12700691	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	7p15.2		rs12700691-C	0.140036	3E-9		0.0171019	[0.011-0.023] unit decrease	Illumina [13479295] (imputed)	N
783	chr7	26029485	26029486	rs12700691	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	7p15.2	MIR148A, NFE2L3	rs12700691-?	NR	2E-11		0.02758184	[0.02-0.036] unit decrease	Illumina [27896057] (imputed)	N
783	chr7	26070764	26070765	rs62446306	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	7p15.2	intergenic	rs62446306-C	0.2144	1E-9		0.02650402	[0.018-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
783	chr7	26070764	26070765	rs62446306	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	7p15.2	intergenic	rs62446306-C	0.2143	6E-10		0.02714734	[0.019-0.036] unit decrease	Affymetrix [~ 2500000] (imputed)	N
784	chr7	26087617	26087617	rs34115226	33730874	Said MA	2021-03-18	Arterioscler Thromb Vasc Biol	Genome-Wide Association Study and Identification of a Protective Missense Variant on Lipoprotein(a) Concentration: Protective Missense Variant on Lipoprotein(a) Concentration.	Lipoprotein (a) levels	348,591 European ancestry individuals, 6,000 African ancestry individuals, 9,116 Asian ancestry individuals, 7,505 individuals		7p15.2	NFE2L3	rs34115226-C	NR	1E-10		0.01073	[0.0055-0.0159] nmol/l increase	NR [19000000] (imputed)	N
784	chr7	26102205	26102206	rs76087154	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	7p15.2	NR	rs76087154-?	NR	5E-9				Affymetrix [~ 8270000] (imputed)	N
784	chr7	26122422	26122423	rs6945071	25335168	Hashimoto R	2014-10-21	Transl Psychiatry	Common variants at 1p36 are associated with superior frontal gyrus volume.	Superior frontal gyrus grey matter volume	158 Japanese ancestry schizophrenia cases, 378 Japanese ancestry healthy controls	NA	7p15.2	NFE2L3	rs6945071-G	0.16	8E-7	(Right superior frontal gyrus)	1035.0	[NR] unit decrease	Affymetrix [517946]	N
784	chr7	26135489	26135490	rs35006008	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p15.2	NR	rs35006008-C	0.21083	8E-13				Affymetrix, Illumina [23472807] (imputed)	N
784	chr7	26135489	26135490	rs35006008	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	7p15.2	NR	rs35006008-C	0.220991	1E-13		0.017017	[0.013-0.022] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
784	chr7	26146062	26146063	rs916964	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Interleukin-18 levels	21,758 European ancestry individuals	9,173 individuals	7p15.2		rs916964-C	0.8	2E-8		0.059	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
784	chr7	26151189	26151190	rs6973742	27490719	Bacelis J	2016-08-04	PLoS One	Literature-Informed Analysis of a Genome-Wide Association Study of Gestational Age in Norwegian Women and Children Suggests Involvement of Inflammatory Pathways.	Gestational age at birth in premature rupture of membrane-initiated deliveries (child effect)	225 Norwegian ancestry children	NA	7p15.2	NR	rs6973742-G		2E-6				NR [525577]	N
784	chr7	26155398	26155399	rs2057763	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	7p15.2		rs2057763-A	0.206556	2E-9		0.016474772	[0.011-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
784	chr7	26183365	26183366	rs4722585	24554482	Leger PD	2014-02-20	J Neurovirol	Genome-wide association study of peripheral neuropathy with D-drug-containing regimens in AIDS Clinical Trials Group protocol 384.	Response to anti-retroviral therapy (ddI/d4T) in HIV-1 infection (Grade 2 peripheral neuropathy)	19 European ancestry cases, 30 African American cases, 9 Hispanic cases, 85 European ancestry controls, 49 African American controls, 30 Hispanic controls	NA	7p15.2	NFE2L3	rs4722585-?		5E-6	(AA)	5.0	[NR]	Illumina [936149]	N
784	chr7	26183365	26183366	rs4722585	24554482	Leger PD	2014-02-20	J Neurovirol	Genome-wide association study of peripheral neuropathy with D-drug-containing regimens in AIDS Clinical Trials Group protocol 384.	Response to anti-retroviral therapy (ddI/d4T) in HIV-1 infection (Grade 1 peripheral neuropathy)	40 European ancestry cases, 37 African American cases, 13 Hispanic cases, 85 European ancestry controls, 49 African American controls, 30 Hispanic controls	NA	7p15.2	NFE2L3	rs4722585-?		5E-6	(AA)	5.0	[NR]	Illumina [936149]	N
784	chr7	26188805	26188806	rs7783045	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Phoneme awareness	3,093 European ancestry individuals	NA	7p15.2	NFE2L3	rs7783045-C	0.914239857	3E-6		0.244554	[0.14-0.35] unit increase	Illumina [6969139] (imputed)	N
784	chr7	26195593	26195594	rs10270359	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	7p15.2	NFE2L3	rs10270359-T	NR	6E-9		0.0167266	[0.011-0.022] unit decrease	Affymetrix [319769] (imputed)	N
784	chr7	26195593	26195594	rs10270359	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	7p15.2	NFE2L3	rs10270359-T	NR	4E-9		0.0168403	[0.011-0.022] unit decrease	Affymetrix [319769] (imputed)	N
784	chr7	26195593	26195594	rs10270359	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	7p15.2	NR	rs10270359-?	NR	4E-9				Affymetrix [~ 8270000] (imputed)	N
784	chr7	26208735	26208736	rs2040786	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	7p15.2	NR	rs2040786-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
785	chr7	26311341	26311342	rs12538243	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	7p15.2	AC010677.5	rs12538243-C	NR	2E-9		0.017511	[0.012-0.023] unit decrease	Affymetrix [321114] (imputed)	N
785	chr7	26321461	26321462	rs77396063	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	7p15.2	NR	rs77396063-?	NR	2E-11				Affymetrix [~ 8270000] (imputed)	N
785	chr7	26329385	26329385	rs35902756	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	7p15.2	SNX10	rs35902756-GT	NR	5E-17		0.0242032	[0.019-0.03] unit decrease	Affymetrix [319769] (imputed)	N
785	chr7	26329385	26329385	rs35902756	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	7p15.2	SNX10	rs35902756-GT	NR	2E-16		0.0238082	[0.018-0.029] unit decrease	Affymetrix [319769] (imputed)	N
785	chr7	26329385	26329385	rs35902756	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	7p15.2	SNX10	rs35902756-GT	NR	1E-9		0.0177206	[0.012-0.023] unit decrease	Affymetrix [321169] (imputed)	N
786	chr7	26349212	26349213	rs4563785	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	7p15.2	SNX10	rs4563785-T	NR	8E-10		0.0309784	[0.021-0.041] unit increase	Affymetrix [319769] (imputed)	N
786	chr7	26349212	26349213	rs4563785	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	7p15.2	SNX10	rs4563785-T	NR	5E-10		0.0313329	[0.021-0.041] unit increase	Affymetrix [319769] (imputed)	N
786	chr7	26349212	26349213	rs4563785	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	7p15.2	NR	rs4563785-G	0.912931	7E-12		0.0144891	[0.01-0.019] unit increase	Affymetrix [16585854] (imputed)	N
786	chr7	26349212	26349213	rs4563785	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	7p15.2	NR	rs4563785-G	0.912931	6E-9		0.0137994	[0.0088-0.0188] unit increase	Affymetrix [16585866] (imputed)	N
786	chr7	26369496	26369497	rs6976271	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	7p15.2	SNX10	rs6976271-C	NR	5E-20		0.0260264	[0.02-0.032] unit increase	Affymetrix [319769] (imputed)	N
786	chr7	26369496	26369497	rs6976271	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	7p15.2	SNX10	rs6976271-C	NR	6E-20		0.0260283	[0.02-0.032] unit increase	Affymetrix [319769] (imputed)	N
786	chr7	26369496	26369497	rs6976271	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	7p15.2	SNX10	rs6976271-C	NR	3E-13		0.0209018	[0.015-0.027] unit increase	Affymetrix [321114] (imputed)	N
786	chr7	26369496	26369497	rs6976271	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	7p15.2	SNX10	rs6976271-C	NR	5E-13		0.0207489	[0.015-0.026] unit increase	Affymetrix [321169] (imputed)	N
786	chr7	26370189	26370190	rs4722593	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	7p15.2	SNX10	rs4722593-A	NR	2E-23		0.0293865	[0.024-0.035] unit decrease	Affymetrix [319769] (imputed)	N
786	chr7	26370189	26370190	rs4722593	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	7p15.2	SNX10	rs4722593-A	NR	4E-23		0.0292171	[0.023-0.035] unit decrease	Affymetrix [319769] (imputed)	N
786	chr7	26370189	26370190	rs4722593	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	7p15.2	SNX10	rs4722593-A	NR	5E-13		0.0215025	[0.016-0.027] unit decrease	Affymetrix [321114] (imputed)	N
786	chr7	26370189	26370190	rs4722593	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	7p15.2	SNX10	rs4722593-A	NR	4E-9		0.0179528	[0.012-0.024] unit increase	Affymetrix [321788] (imputed)	N
786	chr7	26370189	26370190	rs4722593	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	7p15.2	SNX10	rs4722593-A	NR	1E-13		0.0221494	[0.016-0.028] unit decrease	Affymetrix [321169] (imputed)	N
786	chr7	26370189	26370190	rs4722593	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	7p15.2	SNX10	rs4722593-A	0.3238	4E-11		0.0209	[0.015-0.027] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
786	chr7	26383747	26383748	rs6947348	31533690	Orlova E	2019-09-18	BMC Oral Health	Pilot GWAS of caries in African-Americans shows genetic heterogeneity.	Dental caries (decayed, missing and filled tooth surfaces)	109 African American adults	NA	7p15.2	MIR148	rs6947348-?		1E-6		14.59	[9.3-19.88] unit increase	Illumina [~ 4900000] (imputed)	N
786	chr7	26383747	26383748	rs6947348	31533690	Orlova E	2019-09-18	BMC Oral Health	Pilot GWAS of caries in African-Americans shows genetic heterogeneity.	Dental caries (decayed, missing and filled teeth)	109 African American adults	NA	7p15.2	MIR148, SNX10	rs6947348-?		2E-7		4.615	[3.05-6.18] unit increase	Illumina [~ 4900000] (imputed)	N
786	chr7	26385762	26385763	rs73068448	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	7p15.2	SNX10	rs73068448-T	NR	2E-14		0.0290687	[0.022-0.036] unit decrease	Affymetrix [319769] (imputed)	N
786	chr7	26385762	26385763	rs73068448	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	7p15.2	SNX10	rs73068448-T	NR	7E-14		0.0283983	[0.021-0.036] unit decrease	Affymetrix [319769] (imputed)	N
786	chr7	26385762	26385763	rs73068448	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	7p15.2	SNX10	rs73068448-T	NR	1E-9		0.0233404	[0.016-0.031] unit decrease	Affymetrix [321114] (imputed)	N
786	chr7	26385762	26385763	rs73068448	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	7p15.2	SNX10	rs73068448-T	NR	2E-8		0.0216061	[0.014-0.029] unit decrease	Affymetrix [321169] (imputed)	N
786	chr7	26385762	26385763	rs73068448	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	7p15.2	NR	rs73068448-?	NR	1E-20				Affymetrix [~ 8270000] (imputed)	N
786	chr7	26385762	26385763	rs73068448	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	7p15.2	NR	rs73068448-?	NR	2E-12				Affymetrix [~ 8270000] (imputed)	N
786	chr7	26385825	26385826	rs10951130	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	7p15.2	NR	rs10951130-T	0.854612	2E-12		0.00761776	[0.0053-0.0099] unit increase	Affymetrix [16582909] (imputed)	N
786	chr7	26385825	26385826	rs10951130	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	7p15.2	NR	rs10951130-T	0.854612	3E-14		0.00925138	[0.0067-0.0118] unit increase	Affymetrix [16582965] (imputed)	N
786	chr7	26388887	26388888	rs3801887	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	7p15.2	SNX10	rs3801887-A	NR	9E-10		0.0266226	[0.018-0.035] unit increase	Affymetrix [319769] (imputed)	N
786	chr7	26388887	26388888	rs3801887	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	7p15.2	SNX10	rs3801887-A	NR	8E-10		0.0267419	[0.018-0.035] unit increase	Affymetrix [319769] (imputed)	N
786	chr7	26388887	26388888	rs3801887	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	7p15.2	NR	rs3801887-?	NR	5E-10				Affymetrix [~ 8270000] (imputed)	N
786	chr7	26389544	26389545	rs75672713	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	7p15.2	SNX10	rs75672713-A	NR	3E-8		0.0256316	[0.017-0.035] unit increase	Affymetrix [319769] (imputed)	N
786	chr7	26389544	26389545	rs75672713	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	7p15.2	SNX10	rs75672713-A	NR	2E-8		0.0261001	[0.017-0.035] unit increase	Affymetrix [319769] (imputed)	N
786	chr7	26392336	26392337	rs2698721	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	7p15.2	SNX10	rs2698721-A	NR	5E-13		0.0205507	[0.015-0.026] unit increase	Affymetrix [319769] (imputed)	N
786	chr7	26392336	26392337	rs2698721	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	7p15.2	SNX10	rs2698721-A	NR	1E-12		0.0203181	[0.015-0.026] unit increase	Affymetrix [319769] (imputed)	N
786	chr7	26394296	26394297	rs2699805	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	7p15.2	SNX10	rs2699805-A	NR	9E-10		0.017665	[0.012-0.023] unit increase	Affymetrix [321016] (imputed)	N
786	chr7	26394296	26394297	rs2699805	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	7p15.2	SNX10	rs2699805-G	0.600324	2E-23		0.0203214	[0.016-0.024] unit increase	Affymetrix [NR] (imputed)	N
786	chr7	26395692	26395693	rs2698720	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	7p15.2	SNX10	rs2698720-T	NR	5E-27		0.0331317	[0.027-0.039] unit increase	Affymetrix [319769] (imputed)	N
786	chr7	26395692	26395693	rs2698720	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	7p15.2	SNX10	rs2698720-T	NR	5E-27		0.033173	[0.027-0.039] unit increase	Affymetrix [319769] (imputed)	N
786	chr7	26395692	26395693	rs2698720	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	7p15.2	SNX10	rs2698720-T	NR	3E-16		0.0254035	[0.019-0.031] unit increase	Affymetrix [321114] (imputed)	N
786	chr7	26395692	26395693	rs2698720	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	7p15.2	SNX10	rs2698720-T	NR	3E-10		0.0200898	[0.014-0.026] unit decrease	Affymetrix [321788] (imputed)	N
786	chr7	26395692	26395693	rs2698720	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	7p15.2	SNX10	rs2698720-T	NR	9E-16		0.0249823	[0.019-0.031] unit increase	Affymetrix [321169] (imputed)	N
786	chr7	26396197	26396198	rs1406754	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	7p15.2	SNX10	rs1406754-T	NR	2E-25		0.0301777	[0.025-0.036] unit decrease	Affymetrix [319769] (imputed)	N
786	chr7	26396197	26396198	rs1406754	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	7p15.2	SNX10	rs1406754-T	NR	3E-25		0.0300218	[0.024-0.036] unit decrease	Affymetrix [319769] (imputed)	N
786	chr7	26396197	26396198	rs1406754	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	7p15.2	SNX10	rs1406754-T	NR	5E-13		0.0210892	[0.015-0.027] unit decrease	Affymetrix [321114] (imputed)	N
786	chr7	26396197	26396198	rs1406754	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	7p15.2	SNX10	rs1406754-T	NR	9E-13		0.0214361	[0.016-0.027] unit increase	Affymetrix [321788] (imputed)	N
786	chr7	26396197	26396198	rs1406754	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	7p15.2	SNX10	rs1406754-T	NR	4E-13		0.0211982	[0.015-0.027] unit decrease	Affymetrix [321169] (imputed)	N
786	chr7	26397238	26397239	rs1534696	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	7p15.2		rs1534696-A	NR	2E-19		0.0193	[0.015-0.023] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
786	chr7	26397238	26397239	rs1534696	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	7p15.2	SNX10	rs1534696-C	NR	6E-55		0.044082	[0.039-0.05] unit increase	Affymetrix [319769] (imputed)	N
786	chr7	26397238	26397239	rs1534696	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	7p15.2	SNX10	rs1534696-C	NR	2E-55		0.0442705	[0.039-0.05] unit increase	Affymetrix [319769] (imputed)	N
786	chr7	26397238	26397239	rs1534696	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	7p15.2	SNX10	rs1534696-C	NR	3E-33		0.0341801	[0.029-0.04] unit increase	Affymetrix [321114] (imputed)	N
786	chr7	26397238	26397239	rs1534696	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	7p15.2	SNX10	rs1534696-C	NR	7E-21		0.0274922	[0.022-0.033] unit decrease	Affymetrix [321788] (imputed)	N
786	chr7	26397238	26397239	rs1534696	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	7p15.2	SNX10	rs1534696-C	NR	9E-13		0.0201471	[0.015-0.026] unit decrease	Affymetrix [321016] (imputed)	N
786	chr7	26397238	26397239	rs1534696	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	7p15.2	SNX10	rs1534696-C	NR	6E-32		0.0335562	[0.028-0.039] unit increase	Affymetrix [321169] (imputed)	N
786	chr7	26397238	26397239	rs1534696	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	7p15.2	SNX10	rs1534696-A	0.540322	1E-9		0.013648463	[0.0092-0.018] unit increase	Affymetrix [93095623] (imputed)	N
786	chr7	26397238	26397239	rs1534696	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	7p15.2	SNX10	rs1534696-C	0.459007	3E-18		0.0166792	[0.013-0.02] unit decrease	Affymetrix [NR] (imputed)	N
786	chr7	26397238	26397239	rs1534696	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	7p15.2	NR	rs1534696-?	NR	3E-48				Affymetrix [~ 8270000] (imputed)	N
786	chr7	26397238	26397239	rs1534696	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	7p15.2	NR	rs1534696-?	NR	1E-24				Affymetrix [~ 8270000] (imputed)	N
786	chr7	26397238	26397239	rs1534696	31589552	Lind L	2019-10-07	Metab Syndr Relat Disord	Genome-Wide Association Study of the Metabolic Syndrome in UK Biobank.	Metabolic syndrome	291,107 European ancestry individuals	NA	7p15.2	SNX10	rs1534696-C	0.460436	9E-11		0.0424362	[0.03-0.055] unit increase	Affymetrix [9463307] (imputed)	N
786	chr7	26397238	26397239	rs1534696	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	7p15.2		rs1534696-?	NR	2E-41				NR [~ 8900000] (imputed)	N
786	chr7	26397238	26397239	rs1534696	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	7p15.2	NR	rs1534696-A	0.5687	3E-44		0.0244	[0.021-0.028] unit decrease	NR [~ 27400000] (imputed)	N
786	chr7	26397238	26397239	rs1534696	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	7p15.2	NA	rs1534696-A	0.5694	4E-39		0.0226	[0.019-0.026] unit decrease	NR [~ 27400000] (imputed)	N
786	chr7	26397238	26397239	rs1534696	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	7p15.2	NR	rs1534696-A	0.5694	4E-39		0.0226	[0.019-0.026] unit decrease	NR [~ 27400000] (imputed)	N
786	chr7	26397238	26397239	rs1534696	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	7p15.2	SNX10	rs1534696-C	0.44289999999999996	6E-6	(women)	0.0275	[0.016-0.039] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
786	chr7	26397238	26397239	rs1534696	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	7p15.2	SNX10	rs1534696-A	0.5684	3E-6		0.0175	[0.01-0.025] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
786	chr7	26397238	26397239	rs1534696	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	7p15.2	SNX10	rs1534696-A	0.5684	1E-10	(women)	0.032	[0.022-0.042] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
786	chr7	26397238	26397239	rs1534696	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex x age interaction (4df test)	up to 43,776 European ancestry men aged <50, up to 50,526 European ancestry women aged <50, up to 69,944 European ancestry men aged >50, up to 88,129 European ancestry women aged >50	NA	7p15.2	NR	rs1534696-A	0.560416355186006	1E-6				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
786	chr7	26397238	26397239	rs1534696	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	7p15.2	SNX10	rs1534696-C	0.4366	5E-8	(EA, women)	0.0266	[0.017-0.036] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
786	chr7	26397238	26397239	rs1534696	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	7p15.2	SNX10	rs1534696-C	0.4328	2E-8	(women)	0.0267	[0.017-0.036] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
786	chr7	26397992	26397993	rs6461932	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	7p15.2	NR	rs6461932-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
786	chr7	26400247	26400248	rs1534796	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	7p15.2	NR	rs1534796-?	NR	7E-11				Affymetrix [~ 8270000] (imputed)	N
786	chr7	26402506	26402507	rs2699808	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	7p15.2	SNX10	rs2699808-C	NR	2E-18		0.0248645	[0.019-0.03] unit increase	Affymetrix [321114] (imputed)	N
786	chr7	26406470	26406471	rs2699812	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	7p15.2	SNX10	rs2699812-G	NR	1E-29		0.0320295	[0.026-0.038] unit increase	Affymetrix [319769] (imputed)	N
786	chr7	26406470	26406471	rs2699812	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	7p15.2	SNX10	rs2699812-G	NR	7E-30		0.0321777	[0.027-0.038] unit increase	Affymetrix [319769] (imputed)	N
786	chr7	26406470	26406471	rs2699812	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	7p15.2	SNX10	rs2699812-G	NR	2E-11		0.0196664	[0.014-0.025] unit decrease	Affymetrix [321788] (imputed)	N
786	chr7	26406484	26406485	rs2699813	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	7p15.2	SNX10	rs2699813-G	NR	2E-17		0.0243431	[0.019-0.03] unit increase	Affymetrix [321169] (imputed)	N
786	chr7	26406659	26406660	rs2698715	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	7p15.2	SNX10	rs2698715-C	NR	2E-15		0.0236955	[0.018-0.03] unit decrease	Affymetrix [319769] (imputed)	N
786	chr7	26406659	26406660	rs2698715	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	7p15.2	SNX10	rs2698715-C	NR	3E-15		0.0236224	[0.018-0.029] unit decrease	Affymetrix [319769] (imputed)	N
786	chr7	26406659	26406660	rs2698715	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	7p15.2	SNX10	rs2698715-C	NR	1E-9		0.0182824	[0.012-0.024] unit decrease	Affymetrix [321114] (imputed)	N
786	chr7	26406659	26406660	rs2698715	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	7p15.2	SNX10	rs2698715-C	NR	7E-10		0.0185901	[0.013-0.025] unit decrease	Affymetrix [321169] (imputed)	N
786	chr7	26415630	26415631	rs73070407	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	7p15.2	AC004540.4	rs73070407-T	0.0215	3E-6		0.1171	[0.068-0.166] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
786	chr7	26415630	26415631	rs73070407	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	7p15.2	AC004540.4	rs73070407-T	0.0215	8E-6		0.113	[0.063-0.163] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
786	chr7	26415921	26415922	rs2249325	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	7p15.2	NR	rs2249325-?	NR	2E-11				Affymetrix [~ 8270000] (imputed)	N
786	chr7	26416637	26416637	rs201871983	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	7p15.2		rs201871983-GCT	NR	1E-8		0.0139	[0.0092-0.0186] unit decrease	Affymetrix, Illumina [20538307] (imputed)	N
786	chr7	26416637	26416637	rs201871983	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	7p15.2	AC004540.4	rs201871983-GCT	NR	4E-12		0.0208274	[0.015-0.027] unit increase	Affymetrix [321114] (imputed)	N
786	chr7	26428794	26428795	rs2525757	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	7p15.2	AC004540.5	rs2525757-G	NR	1E-12		0.0200895	[0.015-0.026] unit increase	Affymetrix [319769] (imputed)	N
786	chr7	26428794	26428795	rs2525757	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	7p15.2	AC004540.5	rs2525757-G	NR	1E-12		0.0201994	[0.015-0.026] unit increase	Affymetrix [319769] (imputed)	N
786	chr7	26428794	26428795	rs2525757	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	7p15.2	AC004540.5	rs2525757-G	NR	7E-9		0.0165368	[0.011-0.022] unit increase	Affymetrix [321114] (imputed)	N
786	chr7	26437428	26437429	rs1229660	32723796	Mehta SD	2020-07-28	mSystems	Host Genetic Factors Associated with Vaginal Microbiome Composition in Kenyan Women.	Vaginal microbiome composition (G. vaginalis)	171 Kenyan ancestry individuals	NA	7p15.2	SNX10, LOC441204	rs1229660-C	0.1	5E-6		0.99	NR unit decrease	Illumina [336151] (imputed)	N
786	chr7	26440502	26440503	rs976346	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	7p15.2	AC004540.5	rs976346-A	NR	3E-8		0.0162002	[0.01-0.022] unit decrease	Affymetrix [319769] (imputed)	N
786	chr7	26440502	26440503	rs976346	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	7p15.2	AC004540.5	rs976346-A	NR	2E-8		0.0165598	[0.011-0.022] unit decrease	Affymetrix [319769] (imputed)	N
786	chr7	26440502	26440503	rs976346	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	7p15.2	NR	rs976346-?	NR	9E-13				Affymetrix [~ 8270000] (imputed)	N
786	chr7	26440502	26440503	rs976346	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	7p15.2	NR	rs976346-?	NR	3E-10				Affymetrix [~ 8270000] (imputed)	N
786	chr7	26455769	26455770	rs1229674	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	7p15.2	CBX3	rs1229674-?	NR	9E-6	(guanosine diphosphate)	0.17925027	[0.1-0.259] unit decrease	Affymetrix [at least 2500000] (imputed)	N
787	chr7	26481803	26481804	rs10951138	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue/subcutaneous adipose tissue ratio	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	7p15.2	SNX10	rs10951138-A	0.18	3E-6	(overall)			Affymetrix, Illumina [2500000] (imputed)	N
787	chr7	26557420	26557421	rs1541424	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	7p15.2	Intergenic	rs1541424-G	0.161	5E-6	(AA)	0.02	unit decrease	Illumina [NR] (imputed)	N
787	chr7	26557617	26557618	rs886716	19247474	Caporaso N	2009-02-27	PLoS One	Genome-wide and candidate gene association study of cigarette smoking behaviors.	Smoking behavior	2,617 European ancestry smokers, 1,725 European ancestry controls	NA	7p15.2	intergenic	rs886716-?	0.69	8E-6	(CPDBI)	1.52	[NR]	Illumina [~ 518000]	N
787	chr7	26557867	26557868	rs878361	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	7p15.2	Intergenic	rs878361-C	0.84	3E-6	(AA)	0.02	unit increase	Illumina [NR] (imputed)	N
787	chr7	26567074	26567075	rs1990101	29497042	Verweij N	2018-03-01	Nat Commun	Genetic study links components of the autonomous nervous system to heart-rate profile during exercise.	Heart rate response to recovery post exercise (20 sec)	5,4137 European ancestry individuals, 1,744 Asian individuals, 1,445 African individuals, 468 admixed individuals, 1,024 individuals	NA	7p15.2	SKAP	rs1990101-T	0.62	2E-11		0.0421336	[0.03-0.054] unit increase	Affymetrix [509255] (imputed)	N
787	chr7	26569708	26569709	rs11768540	29497042	Verweij N	2018-03-01	Nat Commun	Genetic study links components of the autonomous nervous system to heart-rate profile during exercise.	Heart rate response to recovery post exercise (30 sec)	5,4137 European ancestry individuals, 1,744 Asian individuals, 1,445 African individuals, 468 admixed individuals, 1,024 individuals	NA	7p15.2	SKAP	rs11768540-C	0.622876	8E-9		0.0363229	[0.024-0.049] unit increase	Affymetrix [509255] (imputed)	N
787	chr7	26570258	26570259	rs2391283	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	7p15.2	Intergenic	rs2391283-A	0.156	9E-7	(AA)	0.021	unit decrease	Illumina [NR] (imputed)	N
787	chr7	26570534	26570535	rs12700745	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	7p15.2	Intergenic	rs12700745-G	0.805	2E-6	(AA)	0.019	unit increase	Illumina [NR] (imputed)	N
787	chr7	26574665	26574666	rs730954	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	7p15.2	KIAA0087	rs730954-A	0.832	2E-6	(AA)	0.02	unit increase	Illumina [NR] (imputed)	N
787	chr7	26581795	26581796	rs2391285	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	7p15.2	Intergenic	rs2391285-A	0.162	3E-6	(AA)	0.02	unit decrease	Illumina [NR] (imputed)	N
787	chr7	26582732	26582733	rs2158712	29497042	Verweij N	2018-03-01	Nat Commun	Genetic study links components of the autonomous nervous system to heart-rate profile during exercise.	Heart rate response to recovery post exercise (10 sec)	5,4137 European ancestry individuals, 1,744 Asian individuals, 1,445 African individuals, 468 admixed individuals, 1,024 individuals	NA	7p15.2	SKAP	rs2158712-A	0.518931	1E-12		0.0449769	[0.033-0.057] unit increase	Affymetrix [509255] (imputed)	N
787	chr7	26587095	26587096	rs1029555	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	7p15.2		rs1029555-?	NR	2E-9				NR [~ 8900000] (imputed)	N
787	chr7	26590856	26590857	rs1859601	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	7p15.2	AC004947.2	rs1859601-C	0.794458	6E-9		0.015943764	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
787	chr7	26597150	26597151	rs2040944	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	7p15.2		rs2040944-?	NR	2E-9				NR [~ 8900000] (imputed)	N
787	chr7	26606004	26606005	rs7800418	24684796	Cox AJ	2014-03-11	Neurobiol Aging	Heritability and genetic association analysis of cognition in the Diabetes Heart Study.	Cognitive function	423 type 2 diabetes cases and 127 unaffected siblings from 257 families	NA	7p15.2	C7orf71	rs7800418-T	0.324	7E-7	(3MSE)	1.9628	[1.20-2.73] unit decrease	Affymetrix [> 371951] (imputed)	N
787	chr7	26607030	26607030	rs751030010	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	7p15.2	intergenic	rs751030010-T	0.6414	8E-13		0.0141	[0.01-0.018] unit decrease	Affymetrix [18391927] (imputed)	N
788	chr7	26609626	26609627	rs10229142	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	7p15.2	NR	rs10229142-G	0.588816	1E-11		0.01264	[0.009-0.0163] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
788	chr7	26609626	26609627	rs10229142	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	7p15.2	NR	rs10229142-G	0.586454	5E-14		0.014825	[0.011-0.019] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
788	chr7	26612132	26612133	rs6945012	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p15.2	NR	rs6945012-G	0.37604	1E-11				Affymetrix, Illumina [20825802] (imputed)	N
788	chr7	26614935	26614936	rs13311500	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	7p15.2		rs13311500-T	0.369191	4E-11		0.01516122	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
788	chr7	26651343	26651344	rs12668272	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	7p15.2	SNX10	rs12668272-?	NR	4E-6	(triiodothyronine)	0.59547603	[0.34-0.85] unit increase	Affymetrix [at least 2500000] (imputed)	N
788	chr7	26652291	26652292	rs60466238	30563176	Westermair AL	2018-12-05	Biomolecules	Association of Genetic Variation at AQP4 Locus with Vascular Depression.	Severe depressive disorders in coronary artery disease	78 European ancestry cases, 264 European ancestry controls	NA	7p15.2	NR	rs60466238-T	0.12	9E-6		2.58	[1.65-4.03]	Affymetrix [6341066] (imputed)	N
788	chr7	26660553	26660554	rs76766811	31811950	Penney KL	2019-12-04	Clin Gastroenterol Hepatol	Genetic Variant Associated with Survival of Patients with Stage II-III Colon Cancer.	Survival in colon cancer	4,319 European ancestry cases, 358 African American cases, 190 Asian cases, 107 cases	NA	7p15.2	C7orf71, SKAP2	rs76766811-T	1.6	2E-8		2.63	[1.88-3.67]	Illumina [873829] (imputed)	N
788	chr7	26660553	26660554	rs76766811	31811950	Penney KL	2019-12-04	Clin Gastroenterol Hepatol	Genetic Variant Associated with Survival of Patients with Stage II-III Colon Cancer.	Disease free survival in colon cancer	4,319 European ancestry cases, 358 African American cases, 190 Asian cases, 107 cases	NA	7p15.2	C7orf71, SKAP2	rs76766811-T	0.016	4E-7		2.09	[1.57-2.78]	Illumina [873829] (imputed)	N
788	chr7	26661434	26661435	rs6461959	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs non-severe)	86 Finnish ancestry male severe erosion cases, 50 Finnish ancestry female severe erosion cases, 817 Finnish ancestry male non-severe erosion controls, 991 Finnish ancestry female non-severe erosion controls	NA	7p15.2	NR	rs6461959-?	NR	5E-6				Illumina [NR] (imputed)	N
788	chr7	26695214	26695215	rs212837	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	7p15.2		rs212837-C	NR	3E-8		0.0127	[0.0082-0.0172] unit increase	Affymetrix, Illumina [20528270] (imputed)	N
788	chr7	26695214	26695215	rs212837	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	7p15.2		rs212837-C	0.620639	1E-9		0.013898858	[0.0094-0.0184] unit decrease	Affymetrix [93095623] (imputed)	N
788	chr7	26698847	26698848	rs11971041	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	7p15.2		rs11971041-?	NR	3E-10				NR [~ 8900000] (imputed)	N
788	chr7	26699060	26699061	rs11971098	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	7p15.2	NR	rs11971098-?	NR	3E-10				Affymetrix [~ 8270000] (imputed)	N
788	chr7	26699060	26699061	rs11971098	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	7p15.2	NA	rs11971098-A	0.9093	8E-11		0.0196	[0.014-0.025] unit decrease	NR [~ 27400000] (imputed)	N
788	chr7	26700229	26700230	rs212839	34330890	Ip HF	2021-07-30	Transl Psychiatry	Genetic association study of childhood aggression across raters, instruments, and age.	Childhood aggressive behavior	87,485 European ancestry individuals	NA	7p15.2		rs212839-G	0.325748323	4E-6		0.013109735	[0.0075-0.0187] unit increase	Affymetrix, Illumina [up to 7284995] (imputed)	N
788	chr7	26705511	26705512	rs9638840	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	7p15.2	NR	rs9638840-C	0.051	9E-7	(IFNgamma_STAT4_of_Monocytes)			Illumina [5084123] (imputed)	N
788	chr7	26730199	26730200	rs212857	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	7p15.2	SKAP2	rs212857-A	0.739049	1E-10		0.016269766	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
789	chr7	26740756	26740757	rs113269332	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	7p15.2	NR	rs113269332-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
789	chr7	26742153	26742154	rs7795074	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	7p15.2	SKAP2	rs7795074-?	NR	2E-7		1.1235955	[1.08-1.16]	Illumina [at least 5000000] (imputed)	N
789	chr7	26780825	26780826	rs4722632	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	7p15.2		rs4722632-?	NR	8E-12				NR [~ 8900000] (imputed)	N
789	chr7	26797757	26797758	rs76178013	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	7p15.2	NR	rs76178013-A	0.0860555	4E-8		0.0300563	[0.019-0.041] unit decrease	NR [19129689] (imputed)	N
789	chr7	26804767	26804771	rs373546979	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	7p15.2	SKAP2	rs373546979-C	0.340702	5E-12		0.016195564	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
789	chr7	26823962	26823963	rs513387	34330890	Ip HF	2021-07-30	Transl Psychiatry	Genetic association study of childhood aggression across raters, instruments, and age.	Childhood aggressive behavior	87,485 European ancestry individuals	NA	7p15.2		rs513387-T	0.344300909	3E-6		0.013111886	[0.0076-0.0186] unit increase	Affymetrix, Illumina [up to 7284995] (imputed)	N
789	chr7	26833282	26833283	rs34790403	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	7p15.2	SKAP2	rs34790403-C	NR	4E-9		0.0408651	[0.027-0.054] unit decrease	Affymetrix [323858] (imputed)	N
789	chr7	26838727	26838728	rs373598462	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		SKAP2	rs373598462-?	NR	2E-8	(male)	3.60225	[NR] unit increase	Affymetrix [NR] (imputed)	N
789	chr7	26842702	26842703	rs6945204	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	7p15.2		rs6945204-?	NR	6E-8				NR [~ 8900000] (imputed)	N
789	chr7	26848829	26848830	rs559233	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	7p15.2	SKAP2	rs559233-T	0.4857	1E-7		0.0135	[0.0086-0.0184] unit increase	Affymetrix [19819130] (imputed)	N
789	chr7	26848829	26848830	rs559233	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	7p15.2	SKAP2	rs559233-T	0.4857	2E-8		0.0132	[0.0085-0.0179] unit increase	Affymetrix [19819130] (imputed)	N
789	chr7	26848829	26848830	rs559233	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	7p15.2	SKAP2	rs559233-T	0.4857	8E-13		0.0168	[0.012-0.021] unit increase	Affymetrix [19819130] (imputed)	N
789	chr7	26862264	26862265	rs62448195	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	7p15.2	NR	rs62448195-A	0.05	2E-6	(IFNgamma_STAT4_of_Monocytes)			Illumina [5084123] (imputed)	N
790	chr7	26872580	26872581	rs28550029	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	7p15.2	SKAP2	rs28550029-?	NR	3E-18	(subset analysis)			Illumina [130052]	N
790	chr7	26891015	26891016	rs2030136	28374850	Ellinghaus E	2017-04-04	Sci Rep	Genome-wide association analysis for chronic venous disease identifies EFEMP1 and KCNH8 as susceptibility loci.	Chronic venous disease	323 German ancestry cases and 4,619 German ancestry controls	1,946 German ancestry cases and 3,146 German ancestry controls	7p15.2	C7Orf71, SKAP2, HOTAIRM1, HOXA1, HOXA2, HOXA3, HOXA4, HOXA5, HOXA6, HOXA-AS3	rs2030136-C	0.24	3E-7		1.25	1.15-1.36	Affymetrix [1934349] (imputed)	N
790	chr7	26891664	26891665	rs7804356	19430480	Barrett JC	2009-05-10	Nat Genet	Genome-wide association study and meta-analysis find that over 40 loci affect risk of type 1 diabetes.	Type 1 diabetes	7,514 European ancestry cases, 9,045 European ancestry controls	4,267 European ancestry cases, 4,670 European ancestry controls, 4,342 European ancestry trios from 2,319 families	7p15.2	intergenic	rs7804356-?	0.76	5E-9		1.14	[1.06-1.22]	Affymetrix, Illumina [841622] (imputed)	N
790	chr7	26892439	26892440	rs10486483	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	7p15.2	NR	rs10486483-A	0.2371	2E-7	(EA)	1.0620762	[1.04-1.08]	Affymetrix, Illumina [~ 9000000] (imputed)	N
790	chr7	26892439	26892440	rs10486483	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	7p15.2	NR	rs10486483-A	0.2371	2E-11	(EA)	1.0987586	[1.07-1.13]	Affymetrix, Illumina [~ 9000000] (imputed)	N
790	chr7	26892439	26892440	rs10486483	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Crohn's disease	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls	7p15.2	intergenic	rs10486483-A	0.247	3E-8		1.089	[1.048-1.13]	Affymetrix, Illumina [1230000] (imputed)	N
790	chr7	26904927	26904928	rs73069541	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	7p15.2	NR	rs73069541-G	0.233757	4E-11		0.015434	[0.011-0.02] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
790	chr7	26905730	26905731	rs12540388	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	7p15.2		rs12540388-?	NR	4E-14				NR [~ 8900000] (imputed)	N
790	chr7	26918668	26918669	rs118188573	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs none or mild)	136 Finnish ancestry severe erosion cases, 1011 Finnish ancestry mild or no erosion controls	NA	7p15.2	SKAP2, HOXA	rs118188573-?	NR	5E-6				Illumina [NR] (imputed)	N
790	chr7	26918668	26918669	rs118188573	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs none or mild)	136 Finnish ancestry severe erosion cases, 1011 Finnish ancestry mild or no erosion controls	NA	7p15.2	SKAP2	rs118188573-?	NR	6E-8				Illumina [NR] (imputed)	N
790	chr7	26918668	26918669	rs118188573	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs non-severe)	86 Finnish ancestry male severe erosion cases, 50 Finnish ancestry female severe erosion cases, 817 Finnish ancestry male non-severe erosion controls, 991 Finnish ancestry female non-severe erosion controls	NA	7p15.2	SKAP2, HOXA	rs118188573-?	NR	5E-6		2.9	[1.77-4.86]	Illumina [NR] (imputed)	N
790	chr7	26943686	26943687	rs12533561	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	7p15.2	NR	rs12533561-?	NR	7E-10		0.0595	[0.041-0.078] unit increase	Illumina [at least 560000] (imputed)	N
790	chr7	26994166	26994167	rs17436410	25461247	Lehmann DS	2015-02-01	Pharmacogenet Genomics	Genome-wide association study of virologic response with efavirenz-containing or abacavir-containing regimens in AIDS clinical trials group protocols.	Response to efavirenz-containing treatment in HIV 1 infection (virologic failure)	Up to 737 European ancestry individuals, Up to 545 Black individuals, Up to 314 Hispanic individuals	NA	7p15.2	NR	rs17436410-G	NR	4E-6	(phenotype 2)	2.0	[NR]	Illumina [> 8000000] (imputed)	N
791	chr7	27014987	27014988	rs706015	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	7p15.2	intergenic	rs706015-C	0.18	1E-10		1.1		Illumina [161311]	N
791	chr7	27019790	27019791	rs117205897	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Small cell lung carcinoma	2,664 European ancestry cases,  21,444 European ancestry controls	NA	7p15.2	SKAP2, HOXA1	rs117205897-T	0.017012195	7E-6		1.862035	[1.419121326-2.443184068]	Illumina [10439017] (imputed)	N
791	chr7	27084647	27084648	rs187136683	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	7p15.2	SKAP2, HOXA1	rs187136683-?	NR	2E-10		0.425	[0.29-0.56] unit decrease	Affymetrix [11100000] (imputed)	N
791	chr7	27108126	27108127	rs2465274	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 9)	3,566 European ancestry individuals	4,680 European ancestry individuals	7p15.2		rs2465274-A	0.295262267	4E-9				Illumina [7417619] (imputed)	N
791	chr7	27111993	27111994	rs2522825	30067744	Howe LJ	2018-08-01	PLoS Genet	Investigating the shared genetics of non-syndromic cleft lip/palate and facial morphology.	Philtrum width	6,136 European ancestry individuals	NA	7p15.2	Intergenic	rs2522825-T		1E-8		0.19	[0.13-0.26] unit decrease	Illumina [at least 968515] (imputed)	N
792	chr7	27135313	27135314	rs10951154	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	7p15.2	HOXA1	rs10951154-C	NR	3E-10		1.0799136	NR	Affymetrix, Illumina [8278136] (imputed)	N
792	chr7	27138182	27138183	rs6668	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	7p15.2	HOXA1, HOXA2	rs6668-T	0.37	2E-13		1.06	[1.06-1.07]	Illumina [at least 560000] (imputed)	N
792	chr7	27138182	27138183	rs6668	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	7p15.2	HOXA1, HOXA2	rs6668-?	NR	2E-13		1.065	[1.047-1.083]	Illumina [13757430] (imputed)	N
792	chr7	27138556	27138557	rs189603965	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	7p15.2	HOTAIRM1	rs189603965-T	NR	7E-9		0.0350442	[0.023-0.047] unit decrease	Affymetrix [319769] (imputed)	N
792	chr7	27138556	27138557	rs189603965	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	7p15.2	HOTAIRM1	rs189603965-T	NR	3E-8		0.033825	[0.022-0.046] unit decrease	Affymetrix [321114] (imputed)	N
792	chr7	27144920	27144921	rs1725074	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	7p15.2	HOXA3	rs1725074-T	NR	4E-8		0.0225593	[0.014-0.031] unit decrease	Affymetrix [319769] (imputed)	N
792	chr7	27144920	27144921	rs1725074	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	7p15.2	HOXA3	rs1725074-T	NR	2E-8		0.0230605	[0.015-0.031] unit decrease	Affymetrix [319769] (imputed)	N
792	chr7	27146201	27146202	rs61384251	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	7p15.2	NR	rs61384251-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
792	chr7	27159135	27159136	rs6969780	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Diastolic blood pressure (long-term average)	5,304 African American individuals, 13,137 European ancestry individuals, 1,317 Hispanic individuals, 1,439 admixed individuals, 703 Chinese ancestry individuals	6,500 African American individuals, 2,451 European ancestry individuals, 2,869 Hispanic individuals	7p15.2	NR	rs6969780-C	0.7922	6E-7		0.4161	[0.25-0.58] mmHg increase	Affymetrix, Illumina [NR] (imputed)	N
792	chr7	27159135	27159136	rs6969780	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Diastolic blood pressure (baseline)	5,304 African American individuals, 13,137 European ancestry individuals, 1,317 Hispanic individuals, 1,439 admixed individuals, 703 Chinese ancestry individuals	6,500 African American individuals, 2,451 European ancestry individuals, 2,869 Hispanic individuals	7p15.2	NR	rs6969780-C	0.7922	1E-7		0.5425	[0.34-0.74] mmHg decrease	Affymetrix, Illumina [NR] (imputed)	N
792	chr7	27159135	27159136	rs6969780	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	7p15.2	HOXA3	rs6969780-C	0.16	2E-6	(Japanese)	0.4883	[0.29-0.69] unit increase	Illumina [6200000] (imputed)	N
792	chr7	27159135	27159136	rs6969780	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Pulse pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 Japanese ancestry individuals	7p15.2	HOXA3	rs6969780-C	0.1578	6E-6	(Japanese)	0.3209	[0.18-0.46] unit increase	Illumina [6200000] (imputed)	N
792	chr7	27159135	27159136	rs6969780	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Hypertension	22,566 Japanese ancestry cases, 28,226 Japanese ancestry controls	8,809 East Asian ancestry cases, 13,663 East Asian ancestry controls, 105,253 European ancestry individuals	7p15.2	HOXA3	rs6969780-C	0.1578	5E-6	(Japanese)	0.082	[0.047-0.117] unit increase	Illumina [6200000] (imputed)	N
792	chr7	27159135	27159136	rs6969780	28498854	Liang J	2017-05-12	PLoS Genet	Single-trait and multi-trait genome-wide association analyses identify novel loci for blood pressure in African-ancestry populations.	Systolic blood pressure	Up to 31,155 African individuals	Up to 4,187 African individuals, up to 14,016 Korean ancestry individuals, up to 23,914 European ancestry individuals, up to 12,278 Hispanic individuals	7p15.2	HOXA cluster	rs6969780-C	NR	6E-9		0.6902	[0.46-0.92] unit increase	Affymetrix, Illumina [at least 30072738] (imputed)	N
792	chr7	27159135	27159136	rs6969780	28498854	Liang J	2017-05-12	PLoS Genet	Single-trait and multi-trait genome-wide association analyses identify novel loci for blood pressure in African-ancestry populations.	Hypertension	18,440 African individuals	2,375 African individuals, 3,718 Korean ancestry individuals, 9,348 European ancestry individuals, 3,445 Hispanic individuals	7p15.2	HOXA cluster	rs6969780-C	NR	1E-6		0.0747	[0.045-0.105] unit increase	Affymetrix, Illumina [at least 30072738] (imputed)	N
792	chr7	27159135	27159136	rs6969780	28498854	Liang J	2017-05-12	PLoS Genet	Single-trait and multi-trait genome-wide association analyses identify novel loci for blood pressure in African-ancestry populations.	Diastolic blood pressure	Up to 31,155 African individuals	Up to 4,187 African individuals, up to 14,016 Korean ancestry individuals, up to 23,914 European ancestry individuals, up to 12,278 Hispanic individuals	7p15.2	HOXA cluster	rs6969780-C	NR	3E-10		0.4593	[0.32-0.60] unit increase	Affymetrix, Illumina [at least 30072738] (imputed)	N
792	chr7	27159135	27159136	rs6969780	28498854	Liang J	2017-05-12	PLoS Genet	Single-trait and multi-trait genome-wide association analyses identify novel loci for blood pressure in African-ancestry populations.	Blood pressure traits (multi-trait analysis)	Up to 31,155 African individuals	Up to 4,187 African individuals, up to 14,016 Korean ancestry individuals, up to 23,914 European ancestry individuals, up to 12,278 Hispanic individuals	7p15.2	HOXA cluster	rs6969780-C	NR	2E-7	(Het)			Affymetrix, Illumina [at least 30072738] (imputed)	N
792	chr7	27159135	27159136	rs6969780	28498854	Liang J	2017-05-12	PLoS Genet	Single-trait and multi-trait genome-wide association analyses identify novel loci for blood pressure in African-ancestry populations.	Blood pressure traits (multi-trait analysis)	Up to 31,155 African individuals	Up to 4,187 African individuals, up to 14,016 Korean ancestry individuals, up to 23,914 European ancestry individuals, up to 12,278 Hispanic individuals	7p15.2	HOXA cluster	rs6969780-C	NR	1E-8	(Hom)			Affymetrix, Illumina [at least 30072738] (imputed)	N
792	chr7	27159135	27159136	rs6969780	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Systolic blood pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	154,543 European ancestry individuals, 26,183 South Asian ancestry individuals	7p15.2	HOXA3	rs6969780-C	0.124	3E-8		0.42	[0.26-0.58] unit increase	Illumina [247039]	N
792	chr7	27159135	27159136	rs6969780	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Mean arterial pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	NA	7p15.2	HOXA3	rs6969780-C	0.124500424206038	5E-8		0.39078614	[0.25-0.53] unit increase	Illumina [247039]	N
792	chr7	27159135	27159136	rs6969780	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Hypertension	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	154,543 European ancestry individuals, 26,183 South Asian ancestry individuals	7p15.2	HOXA3	rs6969780-C	0.122	2E-9		6.018746	z score increase	Illumina [247039]	N
792	chr7	27159135	27159136	rs6969780	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Diastolic blood pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	154,543 European ancestry individuals, 26,183 South Asian ancestry individuals	7p15.2	HOXA3	rs6969780-C	0.125	1E-8		0.26	[0.16-0.36] unit increase	Illumina [247039]	N
792	chr7	27162534	27162535	rs3213847	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	7p15.2	HOXA-AS2	rs3213847-G	0.634201	5E-12		0.016426511	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
792	chr7	27162534	27162535	rs3213847	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	7p15.2	HOXA-AS2	rs3213847-G	0.634192	3E-15		0.018631095	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
792	chr7	27168589	27168590	rs1801085	25108383	Geller F	2014-08-10	Nat Genet	Genome-wide association analyses identify variants in developmental genes associated with hypospadias.	Hypospadias	1,006 European ancestry male child cases, 2,390 European ancestry male child controls, 3,096 European ancestry female child controls	1,972 European ancestry male child cases, 1,401 European ancestry male child controls, 405 European ancestry female child controls, 6 European ancestry child controls	7p15.2	HOXA4	rs1801085-G	0.091	1E-11		1.45	[NR]	Illumina [8207076] (imputed)	N
792	chr7	27172570	27172571	rs4719884	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p15.2	NR	rs4719884-A	0.238008	2E-15				Affymetrix, Illumina [23472807] (imputed)	N
792	chr7	27178789	27178790	rs17471520	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	7p15.2	HOXA3, RP1-170O19.22, HOXA-AS3	rs17471520-C	NR	4E-12		0.0345783	[0.025-0.044] unit decrease	Affymetrix [321114] (imputed)	N
792	chr7	27182328	27182329	rs62454414	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	7p15.2	HOXA-AS3	rs62454414-T	0.8668	1E-9		0.0208	[0.014-0.027] unit increase	Affymetrix [19819130] (imputed)	N
792	chr7	27182328	27182329	rs62454414	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	7p15.2	HOXA-AS3	rs62454414-T	0.8668	1E-6		0.0167	[0.01-0.023] unit increase	Affymetrix [19819130] (imputed)	N
792	chr7	27183529	27183530	rs62454415	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	7p15.2	NR	rs62454415-G	0.147659	5E-12		0.018079	[0.013-0.023] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
792	chr7	27183529	27183530	rs62454415	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	7p15.2		rs62454415-?	NR	2E-10				NR [~ 8900000] (imputed)	N
792	chr7	27185069	27185070	rs4265096	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	7p15.2	HOXA3, RP1-170O19.22, HOXA-AS3, HOXA6	rs4265096-T	NR	2E-10		0.0241542	[0.017-0.032] unit decrease	Affymetrix [319769] (imputed)	N
792	chr7	27185069	27185070	rs4265096	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	7p15.2	HOXA3, RP1-170O19.22, HOXA-AS3, HOXA6	rs4265096-T	NR	5E-11		0.0249777	[0.018-0.032] unit decrease	Affymetrix [319769] (imputed)	N
792	chr7	27185069	27185070	rs4265096	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	7p15.2	HOXA3, RP1-170O19.22, HOXA-AS3, HOXA6	rs4265096-T	NR	9E-9		0.0219854	[0.014-0.029] unit decrease	Affymetrix [321114] (imputed)	N
792	chr7	27185069	27185070	rs4265096	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	7p15.2	HOXA3, RP1-170O19.22, HOXA-AS3, HOXA6	rs4265096-T	NR	4E-10		0.0240728	[0.017-0.032] unit decrease	Affymetrix [321169] (imputed)	N
792	chr7	27185722	27185723	rs4719885	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	7p15.2	RP1-170O19.22, HOXA6, HOXA3, HOXA-AS3	rs4719885-G	0.246423	4E-17		0.021713462	[0.017-0.027] unit increase	Affymetrix [93095623] (imputed)	N
792	chr7	27185722	27185723	rs4719885	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	7p15.2	NR	rs4719885-G	0.24669	1E-17		0.018998	[0.015-0.023] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
792	chr7	27189194	27189195	rs3807597	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	7p15.2	NR	rs3807597-?	NR	9E-10				Affymetrix [~ 8270000] (imputed)	N
792	chr7	27189445	27189446	rs62454419	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	7p15.2	RP1-170O19.22, HOXA6, HOXA3, RP1-170O19.23, HOXA-AS3	rs62454419-T	0.069746	5E-9		0.025337663	[0.017-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
792	chr7	27191696	27191696	rs368928402	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	7p15.2	HOXA3, RP1-170O19.22, HOXA-AS3, RP1-170O19.23	rs368928402-GGT	NR	5E-14		0.0375006	[0.028-0.047] unit decrease	Affymetrix [319769] (imputed)	N
792	chr7	27191696	27191696	rs368928402	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	7p15.2	HOXA3, RP1-170O19.22, HOXA-AS3, RP1-170O19.23	rs368928402-GGT	NR	7E-15		0.0387833	[0.029-0.049] unit decrease	Affymetrix [319769] (imputed)	N
792	chr7	27191696	27191696	rs368928402	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	7p15.2	HOXA3, RP1-170O19.22, HOXA-AS3, RP1-170O19.23	rs368928402-GGT	NR	1E-12		0.0356068	[0.026-0.045] unit decrease	Affymetrix [321169] (imputed)	N
792	chr7	27191803	27191804	rs62454420	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	7p15.2	RP1-170O19.22, HOXA3, RP1-170O19.23, HOXA-AS3	rs62454420-G	0.069595	6E-15		0.034136385	[0.026-0.043] unit decrease	Affymetrix [93095623] (imputed)	N
792	chr7	27191803	27191804	rs62454420	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	7p15.2	NR	rs62454420-G	0.070311	2E-10		0.023939	[0.017-0.031] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
792	chr7	27191803	27191804	rs62454420	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p15.2	NR	rs62454420-G	0.0807364	4E-19				Affymetrix, Illumina [23467995] (imputed)	N
792	chr7	27191803	27191804	rs62454420	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	7p15.2	NR	rs62454420-G	0.070245	2E-21		0.034885	[0.028-0.042] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
792	chr7	27191803	27191804	rs62454420	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	7p15.2		rs62454420-?	NR	5E-21		0.0381036	[0.03-0.046] unit decrease	Affymetrix [20259828] (imputed)	N
792	chr7	27191803	27191804	rs62454420	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	7p15.2	HOXA-AS3	rs62454420-A	0.929845	6E-11		0.0437766	[0.031-0.057] unit decrease	NR [17166351] (imputed)	N
792	chr7	27191803	27191804	rs62454420	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	7p15.2	HOXA-AS3	rs62454420-A	0.929838	5E-8	(women)	0.0487083	[0.031-0.066] unit decrease	NR [17166351] (imputed)	N
792	chr7	27197318	27197319	rs4722665	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	7p15.2		rs4722665-?	NR	5E-12				NR [~ 8900000] (imputed)	N
792	chr7	27200854	27200855	rs875897	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	7p15.2	HOXA9	rs875897-C	NR	1E-18		0.035519	[0.028-0.043] unit decrease	Affymetrix [319769] (imputed)	N
792	chr7	27200854	27200855	rs875897	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	7p15.2	HOXA9	rs875897-C	NR	1E-19		0.0366836	[0.029-0.045] unit decrease	Affymetrix [319769] (imputed)	N
792	chr7	27200854	27200855	rs875897	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	7p15.2	HOXA9	rs875897-C	NR	2E-13		0.0300386	[0.022-0.038] unit decrease	Affymetrix [321114] (imputed)	N
792	chr7	27200854	27200855	rs875897	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	7p15.2	HOXA9	rs875897-C	NR	3E-16		0.033398	[0.025-0.041] unit decrease	Affymetrix [321169] (imputed)	N
792	chr7	27200904	27200905	rs875898	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Pulse pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 Japanese ancestry individuals	7p15.2	NR	rs875898-A	0.1626	5E-8	(East Asian)	0.32	[0.21-0.43] unit increase	Illumina [6200000] (imputed)	N
792	chr7	27201531	27201532	rs875896	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	7p15.2	HOXA9	rs875896-C	NR	6E-12		0.0227649	[0.016-0.029] unit decrease	Affymetrix [319769] (imputed)	N
792	chr7	27201531	27201532	rs875896	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	7p15.2	HOXA9	rs875896-C	NR	2E-12		0.0233755	[0.017-0.03] unit decrease	Affymetrix [319769] (imputed)	N
792	chr7	27201531	27201532	rs875896	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	7p15.2	HOXA9	rs875896-C	NR	3E-8		0.0185647	[0.012-0.025] unit decrease	Affymetrix [321114] (imputed)	N
792	chr7	27201531	27201532	rs875896	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	7p15.2	HOXA9	rs875896-C	NR	7E-9		0.019411	[0.013-0.026] unit decrease	Affymetrix [321169] (imputed)	N
792	chr7	27202288	27202289	rs10259620	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	7p15.2	HOXA9	rs10259620-G	0.786997	6E-10		0.016883412	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
792	chr7	27203138	27203139	rs7810502	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	7p15.2	HOXA9	rs7810502-G	NR	2E-8		0.017341	[0.011-0.023] unit decrease	Affymetrix [321169] (imputed)	N
792	chr7	27204652	27204653	rs147261225	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Monocyte count	443,529 European ancestry individuals	NA	7p15.2		rs147261225-?	NR	4E-9		0.187312	[0.12-0.25] unit increase	NR [9800000] (imputed)	N
792	chr7	27204731	27204732	rs35355140	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	7p15.2		rs35355140-A	NR	6E-9		0.0198	[0.013-0.026] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
792	chr7	27204731	27204732	rs35355140	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	7p15.2		rs35355140-A	NR	5E-9		0.0193	[0.013-0.026] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
792	chr7	27204731	27204732	rs35355140	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	7p15.2		rs35355140-A	NR	3E-12		0.0259	[0.019-0.033] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
792	chr7	27204731	27204732	rs35355140	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	7p15.2	HOXA9	rs35355140-A	0.068564	1E-12		0.031761836	[0.023-0.041] unit decrease	Affymetrix [93095623] (imputed)	N
792	chr7	27204731	27204732	rs35355140	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	7p15.2	HOXA9	rs35355140-A	0.068574	4E-9		0.026311958	[0.018-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
792	chr7	27204731	27204732	rs35355140	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p15.2	NR	rs35355140-A	0.0824543	7E-12				Affymetrix, Illumina [24649327] (imputed)	N
792	chr7	27204731	27204732	rs35355140	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p15.2	NR	rs35355140-A	0.0823586	7E-13				Affymetrix, Illumina [24588908] (imputed)	N
792	chr7	27204731	27204732	rs35355140	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	7p15.2	NR	rs35355140-A	0.069266	2E-11		0.024566	[0.017-0.032] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
792	chr7	27204731	27204732	rs35355140	31624269	Terao C	2019-10-17	Nat Commun	GWAS of mosaic loss of chromosome Y highlights genetic effects on blood cell differentiation.	Mosaic loss of chromosome Y (Y chromosome dosage)	95,380 Japanese men	NA	7p15.2	HOXA9	rs35355140-A	0.14	2E-13		0.045	NR unit increase	Illumina [9591901] (imputed)	N
792	chr7	27204731	27204732	rs35355140	31624269	Terao C	2019-10-17	Nat Commun	GWAS of mosaic loss of chromosome Y highlights genetic effects on blood cell differentiation.	Mosaic loss of chromosome Y (Y chromosome dosage)	205,011 men	NA	7p15.2	HOXA9	rs35355140-C	0.93	9E-25		0.023	unit increase	NR [NR]	N
792	chr7	27205281	27205282	rs3801776	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	7p15.2	NR	rs3801776-?	NR	2E-15				Affymetrix [~ 8270000] (imputed)	N
792	chr7	27206018	27206019	rs17501007	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	7p15.2	NR	rs17501007-?	NR	2E-17				Affymetrix [~ 8270000] (imputed)	N
792	chr7	27206018	27206019	rs17501007	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	7p15.2	NR	rs17501007-?	NR	8E-10				Affymetrix [~ 8270000] (imputed)	N
792	chr7	27206687	27206688	rs11773804	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	7p15.2		rs11773804-G	NR	7E-13		0.0125	[0.0092-0.0158] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
792	chr7	27206687	27206688	rs11773804	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	7p15.2	HOXA9, RP1-170O19.20	rs11773804-G	0.408111	5E-15		0.017519368	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
792	chr7	27206687	27206688	rs11773804	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	7p15.2		rs11773804-?	NR	1E-18				NR [~ 8900000] (imputed)	N
792	chr7	27208017	27208018	rs2237336	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	7p15.2	HOXA9, RP1-170O19.20	rs2237336-T	NR	4E-8		0.0157408	[0.01-0.021] unit increase	Affymetrix [319769] (imputed)	N
792	chr7	27208017	27208018	rs2237336	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	7p15.2	HOXA9, RP1-170O19.20	rs2237336-T	0.406123	4E-12		0.0159206	[0.012-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
792	chr7	27208017	27208018	rs2237336	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p15.2	NR	rs2237336-T	0.430544	3E-13				Affymetrix, Illumina [24246363] (imputed)	N
792	chr7	27208017	27208018	rs2237336	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	7p15.2	NR	rs2237336-T	0.408018	7E-16		0.015211	[0.012-0.019] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
792	chr7	27208279	27208280	rs2071243	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	7p15.2		rs2071243-T	NR	1E-10		0.0129	[0.009-0.0168] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
792	chr7	27208279	27208280	rs2071243	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	7p15.2	HOXA10-AS	rs2071243-T	0.466756	1E-11		0.015101705	[0.011-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
792	chr7	27208279	27208280	rs2071243	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p15.2	NR	rs2071243-T	0.486739	6E-21				Affymetrix, Illumina [24332387] (imputed)	N
792	chr7	27208279	27208280	rs2071243	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	7p15.2	NR	rs2071243-T	0.467597	1E-20		0.017547	[0.014-0.021] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
792	chr7	27208279	27208280	rs2071243	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p15.2	NR	rs2071243-T	0.485173	7E-14				Affymetrix, Illumina [20825802] (imputed)	N
792	chr7	27208279	27208280	rs2071243	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	7p15.2	NR	rs2071243-T	0.46745	2E-16		0.015942	[0.012-0.02] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
792	chr7	27208279	27208280	rs2071243	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	7p15.2		rs2071243-?	NR	2E-18				NR [~ 8900000] (imputed)	N
792	chr7	27211547	27211548	rs34957925	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	7p15.2	RP1-170O19.20, HOXA10	rs34957925-T	NR	7E-9		0.0419334	[0.028-0.056] unit decrease	Affymetrix [319769] (imputed)	N
792	chr7	27211547	27211548	rs34957925	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	7p15.2	RP1-170O19.20, HOXA10	rs34957925-T	NR	2E-9		0.0434312	[0.029-0.058] unit decrease	Affymetrix [319769] (imputed)	N
792	chr7	27214556	27214557	rs3779456	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	7p15.2	HOXA10-HOXA9	rs3779456-T	0.556233	2E-24		0.0189046	[0.015-0.023] unit increase	NR [13737936] (imputed)	N
792	chr7	27218418	27218419	rs1859164	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	7p15.2		rs1859164-?	NR	3E-12				NR [~ 8900000] (imputed)	N
792	chr7	27218467	27218468	rs1859165	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	7p15.2		rs1859165-?	NR	1E-30		0.040046	[0.033-0.047] unit increase	Affymetrix [20259828] (imputed)	N
792	chr7	27220830	27220831	rs6461992	31879980	German CA	2019-12-26	Genet Epidemiol	Ordered multinomial regression for genetic association analysis of ordinal phenotypes at Biobank scale.	Hypertension	30,822 British ancestry normal blood pressure individuals, 25,242 British ancestry elevated blood pressure individuals, 50,461 British ancestry stage 1 hypertension individuals, 75,286 British ancestry stage 2 hypertension individuals, 3,754 British ancestry hypertension crisis individuals	NA	7p15.2	HOXA10	rs6461992-?	NR	7E-9		0.06762078	NR unit increase	Affymetrix [464137]	N
792	chr7	27220830	27220831	rs6461992	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	7p15.2	HOXA10-HOXA9	rs6461992-A	0.37	3E-11	(Japanese)	0.5189	[0.37-0.67] unit decrease	Illumina [6200000] (imputed)	N
792	chr7	27220830	27220831	rs6461992	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	7p15.2	HOXA10, HOXA9	rs6461992-A	0.366	2E-12	(Japanese)	0.3898	[0.28-0.5] unit decrease	Illumina [6200000] (imputed)	N
792	chr7	27220830	27220831	rs6461992	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Hypertension	22,566 Japanese ancestry cases, 28,226 Japanese ancestry controls	8,809 East Asian ancestry cases, 13,663 East Asian ancestry controls, 105,253 European ancestry individuals	7p15.2	HOXA10, HOXA9	rs6461992-A	0.366	1E-8	(Japanese)	0.0793	[0.052-0.107] unit decrease	Illumina [6200000] (imputed)	N
792	chr7	27220830	27220831	rs6461992	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	7p15.2	HOXA10-HOXA9	rs6461992-A	0.366	6E-11	(Japanese)	0.3255	[0.23-0.42] unit decrease	Illumina [6200000] (imputed)	N
792	chr7	27220830	27220831	rs6461992	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Systolic blood pressure	140,882 European ancestry individuals	190,318 European ancestry individuals	7p15.2	HOXA3	rs6461992-G	0.926686873	9E-24		0.907	[0.73-1.08] unit increase	Affymetrix [~ 9800000] (imputed)	N
792	chr7	27221453	27221454	rs17501090	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	7p15.2	HOXA11	rs17501090-C	0.979333	5E-34		0.0797972	[0.067-0.093] unit increase	NR [13737936] (imputed)	N
792	chr7	27221453	27221454	rs17501090	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	7p15.2		rs17501090-?	NR	1E-28		0.0766891	[0.063-0.091] unit increase	Affymetrix [20259828] (imputed)	N
792	chr7	27221453	27221454	rs17501090	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	7p15.2	HOXA11	rs17501090-C	0.977122	5E-7	(men)	0.0881585	[0.054-0.122] unit increase	NR [17166351] (imputed)	N
792	chr7	27221453	27221454	rs17501090	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	7p15.2	HOXA11	rs17501090-C	0.976857	2E-11		0.0755811	[0.053-0.098] unit increase	NR [17166351] (imputed)	N
792	chr7	27223081	27223082	rs17501111	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	7p15.2	HOXA11	rs17501111-T	NR	4E-17		0.0437242	[0.034-0.054] unit decrease	Affymetrix [319769] (imputed)	N
792	chr7	27223081	27223082	rs17501111	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	7p15.2	HOXA11	rs17501111-T	NR	7E-18		0.0448059	[0.035-0.055] unit decrease	Affymetrix [319769] (imputed)	N
792	chr7	27223081	27223082	rs17501111	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	7p15.2	HOXA11	rs17501111-T	NR	5E-13		0.0378205	[0.028-0.048] unit decrease	Affymetrix [321114] (imputed)	N
792	chr7	27223081	27223082	rs17501111	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	7p15.2	HOXA11	rs17501111-T	NR	9E-13		0.0374761	[0.027-0.048] unit decrease	Affymetrix [321169] (imputed)	N
792	chr7	27223770	27223771	rs7801581	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	7p15.2	NR	rs7801581-?	NR	1E-20				Affymetrix [~ 8270000] (imputed)	N
792	chr7	27223770	27223771	rs7801581	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	7p15.2	NR	rs7801581-?	NR	2E-13				Affymetrix [~ 8270000] (imputed)	N
792	chr7	27223770	27223771	rs7801581	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7p15.2		rs7801581-?	NR	3E-17				NR [~ 8900000] (imputed)	N
792	chr7	27223770	27223771	rs7801581	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	7p15.2	NR	rs7801581-T	0.25	7E-29		0.023	[0.019-0.027] unit increase	Affymetrix [2446094] (imputed)	N
792	chr7	27223770	27223771	rs7801581	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	7p15.2	NR	rs7801581-T	0.25	5E-8				Affymetrix [2446094] (imputed)	N
792	chr7	27223770	27223771	rs7801581	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	7p15.2	HOXA11	rs7801581-T	0.2443	6E-9		0.026	[0.017-0.035] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
792	chr7	27223770	27223771	rs7801581	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	7p15.2	HOXA11	rs7801581-T	0.2443	1E-8	(EA)	0.0273	[0.018-0.037] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
792	chr7	27223770	27223771	rs7801581	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	7p15.2	HOXA11	rs7801581-T	0.2443	1E-6	(men)	0.0315	[0.019-0.044] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
792	chr7	27223770	27223771	rs7801581	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	7p15.2	HOXA11	rs7801581-T	0.2449	6E-6	(women)	0.0321	[0.018-0.046] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
792	chr7	27223770	27223771	rs7801581	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	7p15.2	HOXA11	rs7801581-T	0.2449	6E-6	(EA, women)	0.0321	[0.018-0.046] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
792	chr7	27223770	27223771	rs7801581	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	7p15.2	HOXA11	rs7801581-T	0.2443	4E-7	(EA)	0.028	[0.017-0.039] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
792	chr7	27223770	27223771	rs7801581	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	7p15.2	HOXA11	rs7801581-T	0.2443	4E-7		0.028	[0.017-0.039] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
792	chr7	27223770	27223771	rs7801581	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	7p15.2	HOXA11	rs7801581-?	0.2443	5E-8	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
792	chr7	27223770	27223771	rs7801581	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	7p15.2	HOXA11	rs7801581-?	0.2443	5E-8				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
792	chr7	27223770	27223771	rs7801581	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	7p15.2	HOXA11	rs7801581-T	0.2445	2E-8	(EA)	0.0253	[0.016-0.034] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
792	chr7	27223770	27223771	rs7801581	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	7p15.2	HOXA11	rs7801581-T	0.2445	3E-7	(EA)	0.0268	[0.017-0.037] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
792	chr7	27223770	27223771	rs7801581	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	7p15.2	HOXA11	rs7801581-?	0.2445	2E-7	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
792	chr7	27223770	27223771	rs7801581	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	7p15.2	HOXA11	rs7801581-T	0.2506	8E-9		0.0248	[0.016-0.033] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
792	chr7	27223770	27223771	rs7801581	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	7p15.2	HOXA11	rs7801581-T	0.2506	3E-6	(men)	0.0293	[0.017-0.042] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
792	chr7	27223770	27223771	rs7801581	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in non-smokers	77,113 European ancestry women, 47,319 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	7p15.2	HOXA11	rs7801581-T	0.2502	9E-7		0.0232	[0.014-0.032] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
792	chr7	27223770	27223771	rs7801581	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	7p15.2	HOXA11	rs7801581-T	0.2502	1E-7				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
792	chr7	27223770	27223771	rs7801581	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	7p15.2	HOXA11	rs7801581-T	0.2502	9E-8		0.0228	[0.014-0.031] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
792	chr7	27223770	27223771	rs7801581	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	7p15.2	HOXA11	rs7801581-T	0.2502	3E-6	(men)	0.0282	[0.016-0.04] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
792	chr7	27223770	27223771	rs7801581	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex x age interaction (4df test)	up to 43,776 European ancestry men aged <50, up to 50,526 European ancestry women aged <50, up to 69,944 European ancestry men aged >50, up to 88,129 European ancestry women aged >50	NA	7p15.2	NR	rs7801581-T	0.245530226279377	2E-10				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
792	chr7	27223770	27223771	rs7801581	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	7p15.2	NR	rs7801581-T	0.245530226279377	7E-12		0.028230367	units increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
792	chr7	27223770	27223771	rs7801581	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	7p15.2	HOXA11	rs7801581-T	0.2448	1E-6	(men)	0.0286	[0.017-0.04] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
792	chr7	27223770	27223771	rs7801581	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	7p15.2	HOXA11	rs7801581-T	0.2435	3E-10		0.0259	[0.018-0.034] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
792	chr7	27223770	27223771	rs7801581	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	7p15.2	HOXA11	rs7801581-T	0.2432	2E-6	(EA, men)	0.0286	[0.017-0.041] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
792	chr7	27223770	27223771	rs7801581	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	7p15.2	HOXA11	rs7801581-T	0.2424	7E-6	(women)	0.025	[0.014-0.036] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
792	chr7	27223770	27223771	rs7801581	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	7p15.2	HOXA11	rs7801581-T	0.2424	4E-10	(EA)	0.0265	[0.018-0.035] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
792	chr7	27223770	27223771	rs7801581	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	7p15.2	HOXA11	rs7801581-T	0.2418	8E-6	(EA, women)	0.0254	[0.014-0.037] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
792	chr7	27223770	27223771	rs7801581	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-hip ratio	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	7p15.2	HOXA11	rs7801581-T	0.2441	5E-8	(EA)	0.0225	[0.014-0.031] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
792	chr7	27223770	27223771	rs7801581	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	7p15.2	HOXA11	rs7801581-T	0.2431	8E-11	(EA)	0.0271	[0.019-0.035] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
792	chr7	27223770	27223771	rs7801581	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	7p15.2	HOXA11	rs7801581-T	0.2431	2E-7	(EA, men)	0.0303	[0.019-0.042] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
792	chr7	27223770	27223771	rs7801581	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	7p15.2	HOXA11	rs7801581-T	0.2431	2E-6	(EA,women)	0.0257	[0.015-0.036] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
792	chr7	27225488	27225489	rs61744408	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	7p15.2	HOXA11-AS	rs61744408-A	NR	2E-9		0.0533612	[0.036-0.071] unit increase	Affymetrix [319769] (imputed)	N
792	chr7	27225488	27225489	rs61744408	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	7p15.2	HOXA11-AS	rs61744408-A	NR	1E-9		0.0541535	[0.037-0.072] unit increase	Affymetrix [319769] (imputed)	N
792	chr7	27225488	27225489	rs61744408	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	7p15.2	NR	rs61744408-?	NR	1E-14				Affymetrix [~ 8270000] (imputed)	N
792	chr7	27226787	27226788	rs4722669	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	7p15.2	NR	rs4722669-?	NR	2E-27				Affymetrix [~ 8270000] (imputed)	N
792	chr7	27226787	27226788	rs4722669	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	7p15.2	NR	rs4722669-?	NR	3E-17				Affymetrix [~ 8270000] (imputed)	N
792	chr7	27226787	27226788	rs4722669	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	7p15.2		rs4722669-?	NR	2E-26				NR [~ 8900000] (imputed)	N
792	chr7	27229118	27229119	rs916880	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls	NA	7p15.2	RP1-170O19.14	rs916880-G	0.0730081	1E-28		0.16904503	[0.14-0.2] unit decrease	Affymetrix [7288503] (imputed)	N
792	chr7	27231044	27231045	rs17472350	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	7p15.2		rs17472350-?	NR	2E-38				NR [~ 8900000] (imputed)	N
792	chr7	27231044	27231045	rs17472350	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	7p15.2		rs17472350-?	NR	8E-29		0.0765994	[0.063-0.09] unit increase	Affymetrix [20259828] (imputed)	N
792	chr7	27231761	27231762	rs4722672	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	7p15.2	NR	rs4722672-G	0.1881	5E-6	(EA)	1.0755208	[1.04-1.11]	Affymetrix, Illumina [~ 9000000] (imputed)	N
792	chr7	27231761	27231762	rs4722672	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Ulcerative colitis	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls	7p15.2	intergenic	rs4722672-C	0.183	2E-8		1.091	[1.043-1.14]	Affymetrix, Illumina [1230000] (imputed)	N
792	chr7	27232125	27232126	rs9770544	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	7p15.2	RP1-170O19.14	rs9770544-C	NR	5E-11		0.0242977	[0.017-0.032] unit decrease	Affymetrix [319769] (imputed)	N
792	chr7	27232125	27232126	rs9770544	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	7p15.2	RP1-170O19.14	rs9770544-C	NR	2E-11		0.0249648	[0.018-0.032] unit decrease	Affymetrix [319769] (imputed)	N
792	chr7	27232125	27232126	rs9770544	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	7p15.2	RP1-170O19.14	rs9770544-C	NR	2E-8		0.0208875	[0.014-0.028] unit decrease	Affymetrix [321114] (imputed)	N
792	chr7	27232125	27232126	rs9770544	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	7p15.2	RP1-170O19.14	rs9770544-C	NR	3E-9		0.0221168	[0.015-0.029] unit decrease	Affymetrix [321169] (imputed)	N
792	chr7	27232125	27232126	rs9770544	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	7p15.2		rs9770544-C	0.18	5E-9				NR [NR] (imputed)	N
792	chr7	27232125	27232126	rs9770544	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	7p15.2		rs9770544-C	0.18	8E-15		0.015	% increase	NR [NR] (imputed)	N
792	chr7	27239549	27239550	rs35042646	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	7p15.2		rs35042646-T	NR	7E-12		0.0449	[0.032-0.058] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
792	chr7	27241472	27241473	rs17501292	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	7p15.2		rs17501292-?	NR	3E-22		0.0249355	[0.02-0.03] unit increase	Affymetrix [20259828] (imputed)	N
792	chr7	27241659	27241660	rs2067087	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	7p15.2	HOTTIP	rs2067087-G	NR	1E-11		0.0236553	[0.017-0.03] unit increase	Affymetrix [323858] (imputed)	N
792	chr7	27241659	27241660	rs2067087	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	7p15.2	HOTTIP	rs2067087-G	NR	6E-12		0.0240001	[0.017-0.031] unit increase	Affymetrix [127266] (imputed)	N
792	chr7	27241659	27241660	rs2067087	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	7p15.2	HOTTIP	rs2067087-G	NR	3E-8		0.0198957	[0.013-0.027] unit decrease	Affymetrix [323858] (imputed)	N
792	chr7	27241659	27241660	rs2067087	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	7p15.2	NR	rs2067087-C	0.715053	2E-13		0.0548024	[0.04-0.07] unit increase	Affymetrix [17914406] (imputed)	N
792	chr7	27241659	27241660	rs2067087	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	7p15.2	HOTTIP	rs2067087-C	0.59	9E-12	(Japanese)	0.5317	[0.38-0.68] unit increase	Illumina [6200000] (imputed)	N
792	chr7	27241659	27241660	rs2067087	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	7p15.2	HOTTIP	rs2067087-C	0.5933	2E-13	(Japanese)	0.4034	[0.3-0.51] unit increase	Illumina [6200000] (imputed)	N
792	chr7	27241659	27241660	rs2067087	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Hypertension	22,566 Japanese ancestry cases, 28,226 Japanese ancestry controls	8,809 East Asian ancestry cases, 13,663 East Asian ancestry controls, 105,253 European ancestry individuals	7p15.2	HOTTIP	rs2067087-C	0.5933	1E-9	(Japanese)	0.085	[0.058-0.112] unit increase	Illumina [6200000] (imputed)	N
792	chr7	27241659	27241660	rs2067087	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	7p15.2	HOTTIP	rs2067087-C	0.5933	9E-12	(Japanese)	0.3389	[0.24-0.44] unit increase	Illumina [6200000] (imputed)	N
792	chr7	27241659	27241660	rs2067087	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	315,284 European ancestry male individuals	NA	7p15.2	NR	rs2067087-C	0.7177	2E-20		0.0178	[0.014-0.022] unit decrease	NR [~ 27400000] (imputed)	N
792	chr7	27241659	27241660	rs2067087	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	316,772 European ancestry male individuals	NA	7p15.2	NR	rs2067087-C	0.7178	5E-14		0.0143	[0.011-0.018] unit decrease	NR [~ 27400000] (imputed)	N
792	chr7	27241659	27241660	rs2067087	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean arterial pressure	136,482 Japanese ancestry individuals	NA	7p15.2	HOTTIP	rs2067087-?	NR	3E-12		0.02776	[0.02-0.036] unit increase novel	Illumina [6108953] (imputed)	N
792	chr7	27241659	27241660	rs2067087	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Diastolic blood pressure	136,615 Japanese ancestry individuals	NA	7p15.2	HOTTIP	rs2067087-?	NR	2E-10		0.02509	[0.017-0.033] unit increase	Illumina [6108953] (imputed)	N
792	chr7	27242358	27242359	rs1859168	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	7p15.2	HOTTIP	rs1859168-A	0.39	5E-12	(Japanese)	0.5335	[0.38-0.69] unit decrease	Illumina [6200000] (imputed)	N
792	chr7	27242358	27242359	rs1859168	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	7p15.2	HOTTIP	rs1859168-A	0.3893	6E-13	(Japanese)	0.3937	[0.29-0.5] unit decrease	Illumina [6200000] (imputed)	N
792	chr7	27242358	27242359	rs1859168	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Hypertension	22,566 Japanese ancestry cases, 28,226 Japanese ancestry controls	8,809 East Asian ancestry cases, 13,663 East Asian ancestry controls, 105,253 European ancestry individuals	7p15.2	HOTTIP	rs1859168-A	0.3893	4E-10	(Japanese)	0.0866	[0.059-0.114] unit decrease	Illumina [6200000] (imputed)	N
792	chr7	27242358	27242359	rs1859168	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	7p15.2	HOTTIP	rs1859168-A	0.3893	5E-11	(Japanese)	0.3239	[0.23-0.42] unit decrease	Illumina [6200000] (imputed)	N
792	chr7	27242358	27242359	rs1859168	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Diastolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	7p15.2	intergenic	rs1859168-C	0.923	2E-20		0.436	[0.34-0.53] unit increase	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
792	chr7	27242358	27242359	rs1859168	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Diastolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	7p15.2	intergenic	rs1859168-C	0.923	1E-8	(EA, initial)	0.464	[0.3-0.62] unit increase	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
792	chr7	27243220	27243221	rs2023843	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals, 6,795 African American individuals, 6,324 East Asian ancestry individuals, 2,335 South Asian ancestry individuals, 1,442 Hispanic individuals	NA	7p15.2	HOTTIP	rs2023843-T	NR	5E-14		0.0275	[0.02-0.035] unit increase	Affymetrix, Illumina [8034757] (imputed)	N
792	chr7	27243220	27243221	rs2023843	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Microalbuminuria	51,861 European, African American, East Asian, South Asian or Hispanic ancestry cases, 297,093 European, African American, East Asian, South Asian or Hispanic ancestry controls	NA	7p15.2	HOTTIP	rs2023843-T	NR	2E-6		1.0605631	[1.04-1.08]	Affymetrix, Illumina [8326000] (imputed)	N
792	chr7	27243220	27243221	rs2023843	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Systolic blood pressure	11,380 African American individuals, 21,549 Hispanic/Latino individuals, 1,086 Asian ancestry individuals, 636 Native American ancestry individuals, 782 individuals	NA	7p15.2	NR	rs2023843-?	NR	2E-6		1.010548	[0.59-1.43] unit increase	Illumina [32101933] (imputed)	N
792	chr7	27243220	27243221	rs2023843	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	7p15.2		rs2023843-?	NR	8E-41				NR [~ 8900000] (imputed)	N
792	chr7	27243220	27243221	rs2023843	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	7p15.2	HOTTIP	rs2023843-C	0.9072	1E-16		0.3618	[0.28-0.45] mmHg increase	Affymetrix [NR] (imputed)	N
792	chr7	27243220	27243221	rs2023843	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	7p15.2	HOTTIP	rs2023843-?	NR	3E-39				Affymetrix, Illumina [18800000] (imputed)	N
792	chr7	27243220	27243221	rs2023843	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	7p15.2	HOTTIP	rs2023843-?	NR	3E-26	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
792	chr7	27243220	27243221	rs2023843	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	7p15.2	HOTTIP	rs2023843-?	NR	1E-7	(African)			Affymetrix, Illumina [18800000] (imputed)	N
792	chr7	27243220	27243221	rs2023843	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	7p15.2	HOTTIP	rs2023843-?	NR	4E-41				Affymetrix, Illumina [18800000] (imputed)	N
792	chr7	27243220	27243221	rs2023843	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	7p15.2	HOTTIP	rs2023843-?		6E-29	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
792	chr7	27243220	27243221	rs2023843	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	7p15.2	HOTTIP	rs2023843-?	NR	6E-20	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
792	chr7	27243220	27243221	rs2023843	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	7p15.2	HOTTIP	rs2023843-?	NR	5E-32				Affymetrix, Illumina [18800000] (imputed)	N
792	chr7	27243220	27243221	rs2023843	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	7p15.2	HOTTIP	rs2023843-?	NR	2E-7	(African)			Affymetrix, Illumina [18800000] (imputed)	N
792	chr7	27243220	27243221	rs2023843	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	7p15.2	HOTTIP	rs2023843-?	NR	7E-22	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
792	chr7	27243220	27243221	rs2023843	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	7p15.2	HOTTIP	rs2023843-?	NR	2E-6	(African)			Affymetrix, Illumina [18800000] (imputed)	N
792	chr7	27243220	27243221	rs2023843	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	7p15.2	HOTTIP	rs2023843-?	NR	2E-33				Affymetrix, Illumina [18800000] (imputed)	N
792	chr7	27243220	27243221	rs2023843	27736895	Franceschini N	2016-10-13	PLoS One	Variant Discovery and Fine Mapping of Genetic Loci Associated with Blood Pressure Traits in Hispanics and African Americans.	Systolic blood pressure	19,706 Hispanic individuals, 18,744 African American individuals	NA	7p15.2	HOTTIP	rs2023843-?	NR	3E-7				Illumina [up to 196725]	N
792	chr7	27243237	27243238	rs2023844	31630189	Casanova F	2019-10-20	Hum Mol Genet	A genome-wide association study implicates multiple mechanisms influencing raised urinary albumin-creatinine ratio.	Urinary albumin-to-creatinine ratio	437,027 European ancestry individuals	60,130 individuals	7p15.2	HOTTIP	rs2023844-A	0.926	5E-12	(EA)	0.027	[0.019-0.035] unit increase	NR [12082474] (imputed)	N
792	chr7	27243237	27243238	rs2023844	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals	NA	7p15.2	HOTTIP	rs2023844-A	0.9255	2E-12		0.0265227	[0.019-0.034] unit increase	Affymetrix, Illumina [8603712] (imputed)	N
792	chr7	27243237	27243238	rs2023844	30220432	Haas ME	2018-09-06	Am J Hum Genet	Genetic Association of Albuminuria with Cardiometabolic Disease and Blood Pressure.	Urinary albumin excretion	382,500 European ancestry individuals	NA	7p15.2	HOTTIP	rs2023844-A	0.926	1E-9		0.01934	[0.013-0.026] unit increase	Affymetrix [11709857] (imputed)	N
792	chr7	27243961	27243962	rs4722675	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls, 49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	7p15.2		rs4722675-G	NR	1E-21		0.0707	[0.056-0.085] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
792	chr7	27243961	27243962	rs4722675	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	7p15.2	NR	rs4722675-A	0.3865	6E-12	(East Asian)	0.4453	[0.32-0.57] unit decrease	Illumina [6200000] (imputed)	N
792	chr7	27243961	27243962	rs4722675	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	7p15.2	HOTTIP	rs4722675-A	0.3866	5E-13	(Japanese)	0.3983	[0.29-0.51] unit decrease	Illumina [6200000] (imputed)	N
792	chr7	27243961	27243962	rs4722675	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Hypertension	22,566 Japanese ancestry cases, 28,226 Japanese ancestry controls	8,809 East Asian ancestry cases, 13,663 East Asian ancestry controls, 105,253 European ancestry individuals	7p15.2	HOTTIP	rs4722675-A	0.3866	5E-10	(East Asian)	0.0735	[0.05-0.097] unit decrease	Illumina [6200000] (imputed)	N
792	chr7	27243961	27243962	rs4722675	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	7p15.2	HOTTIP	rs4722675-A	0.3866	5E-11	(Japanese)	0.3276	[0.23-0.43] unit decrease	Illumina [6200000] (imputed)	N
792	chr7	27243961	27243962	rs4722675	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Systolic blood pressure	136,597 Japanese ancestry individuals	NA	7p15.2	HOTTIP	rs4722675-?	NR	9E-11		0.02571	[0.018-0.033] unit increase	Illumina [6108953] (imputed)	N
792	chr7	27245100	27245101	rs929250	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	7p15.2		rs929250-T	NR	4E-19		0.0611	[0.048-0.074] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
792	chr7	27245100	27245101	rs929250	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Potassium levels	132,938 Japanese ancestry individuals	NA	7p15.2	HOTTIP	rs929250-?	NR	3E-11		0.02647	[0.019-0.034] unit decrease novel	Illumina [6108953] (imputed)	N
792	chr7	27245892	27245893	rs3735533	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls, 20,367 East Asian ancestry cases, 158,359 East Asian ancestry controls	NA	7p15.2		rs3735533-C	NR	6E-12		0.063	[0.045-0.081] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
792	chr7	27245892	27245893	rs3735533	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls	NA	7p15.2	HOTTIP	rs3735533-T	0.0735793	4E-20		0.14144403	[0.11-0.17] unit decrease	Affymetrix [7288503] (imputed)	N
792	chr7	27245892	27245893	rs3735533	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls	NA	7p15.2	HOTTIP	rs3735533-T	0.0746658	3E-11		0.10431495	[0.074-0.135] unit decrease	Affymetrix [7288503] (imputed)	N
792	chr7	27245892	27245893	rs3735533	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	7p15.2	HOTTIP	rs3735533-T	0.0732746	1E-17		0.09908122	[0.076-0.122] unit decrease	Affymetrix [7288503] (imputed)	N
792	chr7	27245892	27245893	rs3735533	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	7p15.2		rs3735533-?	NR	9E-17				NR [~ 8900000] (imputed)	N
792	chr7	27245892	27245893	rs3735533	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	7p15.2	NR	rs3735533-T	0.4038	8E-13	(East Asian)	0.3262	[0.24-0.42] unit decrease	Illumina [6200000] (imputed)	N
792	chr7	27245892	27245893	rs3735533	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Systolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	7p15.2	HOTTIP, EVX	rs3735533-T	0.081	6E-14		0.798	[0.59-1.01] mm Hg decrease	Affymetrix, Illumina, Perlegen [128272]	N
792	chr7	27245892	27245893	rs3735533	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Diastolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	7p15.2	HOTTIP, EVX	rs3735533-T	0.081	1E-11		0.445	[0.32-0.57] mm Hg decrease	Affymetrix, Illumina, Perlegen [128272]	N
792	chr7	27245992	27245994	rs72125650	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	7p15.2		rs72125650-G	NR	7E-13		0.019	[0.014-0.024] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
792	chr7	27245995	27245996	rs60772526	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	7p15.2		rs60772526-T	NR	9E-25		0.0276	[0.022-0.033] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
792	chr7	27245995	27245996	rs60772526	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	145,505 East Asian ancestry individuals	NA	7p15.2		rs60772526-T	0.590113	4E-11		0.0226965	[0.016-0.029] unit increase	Illumina [13477770] (imputed)	N
792	chr7	27245995	27245996	rs60772526	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	7p15.2		rs60772526-T	NR	2E-23		0.0274	[0.022-0.033] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
792	chr7	27245995	27245996	rs60772526	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	7p15.2		rs60772526-T	NR	3E-18		0.0246	[0.019-0.03] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
792	chr7	27245995	27245996	rs60772526	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	7p15.2	HOTTIP	rs60772526-C	0.8778	7E-33		0.6519	[0.54-0.76] mmHg increase	Affymetrix [NR] (imputed)	N
792	chr7	27247278	27247279	rs10228276	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	7p15.2	NR	rs10228276-A	0.5991	4E-11	(East Asian)	0.27	[0.19-0.35] unit increase	Illumina [6200000] (imputed)	N
792	chr7	27248890	27248891	rs7812039	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	145,502 East Asian ancestry individuals	NA	7p15.2		rs7812039-G	0.597421	4E-12		0.0244472	[0.018-0.031] unit increase	Illumina [13477767] (imputed)	N
792	chr7	27248890	27248891	rs7812039	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	145,515 East Asian ancestry individuals	NA	7p15.2		rs7812039-G	0.597424	4E-10		0.0224834	[0.015-0.03] unit increase	Illumina [13477770] (imputed)	N
792	chr7	27248890	27248891	rs7812039	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	7p15.2	HOTTIP	rs7812039-C	0.184841	6E-25		0.0251262	[0.02-0.03] unit increase	NR [13737936] (imputed)	N
792	chr7	27248890	27248891	rs7812039	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	7p15.2		rs7812039-?	NR	2E-13		0.0190471	[0.014-0.024] unit increase	Affymetrix [20259828] (imputed)	N
792	chr7	27249616	27249617	rs17437657	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	7p15.2	NR	rs17437657-A	0.0867	2E-29		0.0372	[0.031-0.044] unit decrease	NR [~ 27400000] (imputed)	N
792	chr7	27249616	27249617	rs17437657	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	7p15.2	NR	rs17437657-A	0.0868	7E-14		0.0245	[0.018-0.031] unit decrease	NR [~ 27400000] (imputed)	N
792	chr7	27251775	27251776	rs10248288	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	7p15.2	HOTTIP	rs10248288-C	NR	3E-8		0.0176261	[0.011-0.024] unit increase	Affymetrix [323858] (imputed)	N
792	chr7	27251775	27251776	rs10248288	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	7p15.2	HOTTIP	rs10248288-C	NR	3E-8		0.0176026	[0.011-0.024] unit increase	Affymetrix [127266] (imputed)	N
792	chr7	27251775	27251776	rs10248288	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	7p15.2	HOTTIP	rs10248288-C	NR	8E-11		0.0210908	[0.015-0.027] unit decrease	Affymetrix [323858] (imputed)	N
792	chr7	27251775	27251776	rs10248288	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	7p15.2	NR	rs10248288-G	0.47	3E-7	(Japanese, Male)	0.024	[0.014-0.034] unit increase	Illumina [6108953] (imputed)	N
793	chr7	27264717	27264718	rs75584603	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	7p15.2	NR	rs75584603-?	NR	7E-9				Affymetrix [~ 8270000] (imputed)	N
793	chr7	27266508	27266509	rs149544731	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	7p15.2		rs149544731-?	NR	3E-10				NR [~ 8900000] (imputed)	N
793	chr7	27279190	27279191	rs3801321	34356046	Oluwafemi OO	2021-07-01	Genes (Basel)	Genome-Wide Association Studies of Conotruncal Heart Defects with Normally Related Great Vessels in the United States.	Conotruncal heart defects with normally related great vessels	294 European ancestry cases, 2,976 European ancestry controls, 913 cases, 559 controls, 641 trios	NA	7p15.2		rs3801321-?	NR	5E-6				Affymetrix, Illumina [3311160] (imputed)	N
793	chr7	27279845	27279845	rs5883070	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption (light vs heavy) interaction (2df test)	12,758 European ancestry heavy drinkers, 1,326 African American or Afro-Caribbean heavy drinkers, 648 Asian ancestry heavy drinkers, 364 Hispanic or Latin American heavy drinkers, 43,947 European ancestry light drinkers, 8,239 African American or Afro-Caribbean light drinkers, 1,141 Asian ancestry light drinkers, 4,448 Hispanic or Latin American light drinkers	42,078 European ancestry heavy drinkers, 217 African American heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic heavy drinkers, 74,706 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	7p15.2	EVX1	rs5883070-?	0.06	3E-9	(Asian, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
793	chr7	27279845	27279845	rs5883070	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption (light vs heavy) interaction (2df test)	56,705 European ancestry heavy and light drinkers, 9,725 African American or Afro-Caribbean heavy and light drinkers, 1,789 Asian ancestry heavy and light drinkers, 4,812 Hispanic or Latin American heavy and light drinkers	42,077 European ancestry heavy drinkers, 217 African American heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic ancestry heavy drinkers, 74,701 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	7p15.2	EVX1	rs5883070-?	0.06	2E-9	(Asian, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
793	chr7	27279845	27279845	rs5883070	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption (light vs heavy) interaction (2df test)	12,758 European ancestry heavy drinkers, 1,326 African American or Afro-Caribbean heavy drinkers, 648 Asian ancestry heavy drinkers, 364 Hispanic or Latin American heavy drinkers, 43,947 European ancestry light drinkers, 8,239 African American or Afro-Caribbean light drinkers, 1,141 Asian ancestry light drinkers, 4,448 Hispanic or Latin American light drinkers	42,079 European ancestry heavy drinkers, 217 African American or Afro-Caribbean heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic ancestry heavy drinkers, 74,757 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	7p15.2	EVX1	rs5883070-?	0.06	4E-8	(Asian, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
793	chr7	27289116	27289117	rs10255839	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption interaction (2df test)	63,608 European ancestry drinkers, 10,193 African American or Afro-Caribbean heavy drinkers,  2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,494 European ancestry non-drinkers, 11,224 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,002 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,452 Hispanic drinkers, 43,316 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,945 Asian ancestry non-drinkers, 6,925 Hispanic non-drinkers	7p15.2	EVX1-AS, EVX1	rs10255839-A	0.86	9E-23	(AA, Asian, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
793	chr7	27289116	27289117	rs10255839	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption (light vs heavy) interaction (2df test)	12,758 European ancestry heavy drinkers, 1,326 African American or Afro-Caribbean heavy drinkers, 648 Asian ancestry heavy drinkers, 364 Hispanic or Latin American heavy drinkers, 43,947 European ancestry light drinkers, 8,239 African American or Afro-Caribbean light drinkers, 1,141 Asian ancestry light drinkers, 4,448 Hispanic or Latin American light drinkers	42,078 European ancestry heavy drinkers, 217 African American heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic heavy drinkers, 74,706 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	7p15.2	EVX1-AS, EVX1	rs10255839-A	0.87	8E-13	(AA, Asian, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
793	chr7	27289116	27289117	rs10255839	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption interaction (2df test)	91,110 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	237,996 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,315 European ancestry non-drinkers, 2,761 African ancestry non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	7p15.2	EVX1-AS, EVX1	rs10255839-A	0.86	4E-17	(AA, Asian, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
793	chr7	27289116	27289117	rs10255839	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption (light vs heavy) interaction (2df test)	56,705 European ancestry heavy and light drinkers, 9,725 African American or Afro-Caribbean heavy and light drinkers, 1,789 Asian ancestry heavy and light drinkers, 4,812 Hispanic or Latin American heavy and light drinkers	42,077 European ancestry heavy drinkers, 217 African American heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic ancestry heavy drinkers, 74,701 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	7p15.2	EVX1-AS, EVX1	rs10255839-A	0.87	1E-13	(AA, Asian, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
793	chr7	27289116	27289117	rs10255839	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption interaction (2df test)	63,607 European ancestry drinkers, 10,193 African American or Afro-Caribbean drinkers, 2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,492 European ancestry non-drinkers, 11,223 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,058 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	7p15.2	EVX1-AS, EVX1	rs10255839-A	0.86	4E-19	(AA, Asian, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
793	chr7	27289116	27289117	rs10255839	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption (light vs heavy) interaction (2df test)	12,758 European ancestry heavy drinkers, 1,326 African American or Afro-Caribbean heavy drinkers, 648 Asian ancestry heavy drinkers, 364 Hispanic or Latin American heavy drinkers, 43,947 European ancestry light drinkers, 8,239 African American or Afro-Caribbean light drinkers, 1,141 Asian ancestry light drinkers, 4,448 Hispanic or Latin American light drinkers	42,079 European ancestry heavy drinkers, 217 African American or Afro-Caribbean heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic ancestry heavy drinkers, 74,757 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	7p15.2	EVX1-AS, EVX1	rs10255839-A	0.87	4E-11	(AA, Asian, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
793	chr7	27291844	27291845	rs17437838	28394258	Wild PS	2017-04-10	J Clin Invest	Large-scale genome-wide analysis identifies genetic variants associated with cardiac structure and function.	Left ventricle wall thickness	30,201 European ancestry individuals	NA	7p15.2	NR	rs17437838-A	0.0219	3E-6		0.034	[0.02-0.048] unit decrease	Affymetrix, Illumina [at least 283291] (imputed)	N
793	chr7	27298136	27298137	rs7783517	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	7p15.2	NR	rs7783517-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
793	chr7	27304397	27304398	rs186230002	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	7p15.2	NR	rs186230002-?	NR	5E-9				Affymetrix [~ 8270000] (imputed)	N
793	chr7	27305222	27305223	rs113557605	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	7p15.2	EVX1	rs113557605-T	0.936542	5E-18		0.0323225	[0.025-0.04] unit increase	NR [13737936] (imputed)	N
793	chr7	27319038	27319039	rs28451436	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	7p15.2	RP1-170O19.19	rs28451436-A	0.101625	4E-15		0.07846247	[0.059-0.098] unit increase	Affymetrix [7288503] (imputed)	N
793	chr7	27319038	27319039	rs28451436	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption interaction (2df test)	91,110 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	237,996 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,315 European ancestry non-drinkers, 2,761 African ancestry non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	7p15.2	EVX1-AS, EVX1	rs28451436-A	0.14	2E-8	(AA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
793	chr7	27321265	27321266	rs192638136	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PAPLN	5,361 Icelandic ancestry individuals	NA	7p15.2		rs192638136-T	0.009901	1E-15		0.128609	[0.097-0.16] unit increase	Illumina [7506463] (imputed)	N
793	chr7	27321549	27321550	rs7808452	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls, 22,356 East Asian ancestry cases, 156,370 East Asian ancestry controls	NA	7p15.2		rs7808452-A	NR	3E-19		0.1173	[0.092-0.143] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
793	chr7	27321549	27321550	rs7808452	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls	NA	7p15.2	RP1-170O19.19	rs7808452-A	0.101394	4E-17		0.11180114	[0.086-0.138] unit increase	Affymetrix [7288503] (imputed)	N
793	chr7	27321549	27321550	rs7808452	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption interaction (2df test)	63,607 European ancestry drinkers, 10,193 African American or Afro-Caribbean drinkers, 2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,492 European ancestry non-drinkers, 11,223 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,058 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	7p15.2	EVX1-AS, EVX1	rs7808452-A	0.1	5E-11	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
793	chr7	27328186	27328187	rs6961048	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls	NA	7p15.2	RP1-170O19.19	rs6961048-G	0.10066	2E-19		0.11829849	[0.093-0.144] unit increase	Affymetrix [7288503] (imputed)	N
793	chr7	27328186	27328187	rs6961048	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption interaction (2df test)	91,110 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	237,996 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,315 European ancestry non-drinkers, 2,761 African ancestry non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	7p15.2	EVX1-AS, EVX1	rs6961048-C	0.9	1E-9	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
793	chr7	27328209	27328210	rs10279895	28498854	Liang J	2017-05-12	PLoS Genet	Single-trait and multi-trait genome-wide association analyses identify novel loci for blood pressure in African-ancestry populations.	Hypertension	18,440 African individuals	2,375 African individuals, 3,718 Korean ancestry individuals, 9,348 European ancestry individuals, 3,445 Hispanic individuals	7p15.2	EVX1, HOXA cluster	rs10279895-G	NR	9E-9		0.1813	[0.12-0.24] unit increase	Affymetrix, Illumina [at least 30072738] (imputed)	N
793	chr7	27328209	27328210	rs10279895	28498854	Liang J	2017-05-12	PLoS Genet	Single-trait and multi-trait genome-wide association analyses identify novel loci for blood pressure in African-ancestry populations.	Diastolic blood pressure	Up to 31,155 African individuals	Up to 4,187 African individuals, up to 14,016 Korean ancestry individuals, up to 23,914 European ancestry individuals, up to 12,278 Hispanic individuals	7p15.2	EVX1, HOXA cluster	rs10279895-G	NR	2E-6		0.7553	[0.44-1.07] unit increase	Affymetrix, Illumina [at least 30072738] (imputed)	N
793	chr7	27330055	27330056	rs13225783	20445134	Smith NL	2010-05-05	Circ Cardiovasc Genet	Association of genome-wide variation with the risk of incident heart failure in adults of European and African ancestry: a prospective meta-analysis from the cohorts for heart and aging research in genomic epidemiology (CHARGE) consortium.	Heart failure	20,926 European ancestry individuals, 2,895 African ancestry individuals	NA	7p15.2	EVX1	rs13225783-?	0.05	7E-6	(EA)	1.38	[0.96-1.99]	Affymetrix, Illumina [2478304] (imputed)	N
793	chr7	27332848	27332849	rs180869103	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	7p15.2		rs180869103-?	NR	2E-9				NR [~ 8900000] (imputed)	N
793	chr7	27335560	27335561	rs11564024	22610502	Kennedy RB	2012-05-19	Hum Genet	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IL-1beta)	Up to 512 European ancestry individuals, up to 199 African American individuals	NA	7p15.2	LOC392008	rs11564024-C		3E-8	(AA)			Illumina [NR]	N
793	chr7	27337866	27337867	rs17428471	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	7p15.2	EVX1, HIBADH	rs17428471-G		3E-12		0.486	unit decrease	Affymetrix [at least 2696785] (imputed)	N
793	chr7	27337866	27337867	rs17428471	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	7p15.2	EVX1, HIBADH	rs17428471-G		3E-6		0.218	unit decrease	Affymetrix [at least 2696785] (imputed)	N
793	chr7	27337866	27337867	rs17428471	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	7p15.2	EVX1, HIBADH	rs17428471-G		9E-6		0.286	unit decrease	Affymetrix [at least 2696785] (imputed)	N
793	chr7	27337866	27337867	rs17428471	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	7p15.2	EVX1, HIBADH	rs17428471-G		3E-6	(EA)	0.326	unit decrease	Affymetrix [at least 2696785] (imputed)	N
793	chr7	27337866	27337867	rs17428471	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	7p15.2	EVX1, HIBADH	rs17428471-G		5E-9		0.249	unit decrease	Affymetrix [at least 2696785] (imputed)	N
793	chr7	27337866	27337867	rs17428471	23972371	Franceschini N	2013-08-20	Am J Hum Genet	Genome-wide association analysis of blood-pressure traits in African-ancestry individuals reveals common associated genes in African and non-African populations.	Blood pressure	28,190 African American individuals, 1,188 Nigerian ancestry individuals	69,395 European ancestry individuals, 5,266 African American individuals, 6,497 African ancestry individuals, 19,601 East Asian ancestry individuals	7p15.2	HOXA, EVX1	rs17428471-T	0.14	2E-9	(DBP)	0.61	[0.34-0.88] unit increase	Affymetrix, Illumina [~ 2420000] (imputed)	N
793	chr7	27337866	27337867	rs17428471	23972371	Franceschini N	2013-08-20	Am J Hum Genet	Genome-wide association analysis of blood-pressure traits in African-ancestry individuals reveals common associated genes in African and non-African populations.	Blood pressure	28,190 African American individuals, 1,188 Nigerian ancestry individuals	69,395 European ancestry individuals, 5,266 African American individuals, 6,497 African ancestry individuals, 19,601 East Asian ancestry individuals	7p15.2	HOXA, EVX1	rs17428471-T	0.14	2E-12	(SBP)	1.2	[0.73-1.67] unit increase	Affymetrix, Illumina [~ 2420000] (imputed)	N
793	chr7	27340295	27340296	rs7792725	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	7p15.2	HOXA13	rs7792725-?	NR	5E-7	(inosine)	0.2975907	[0.18-0.41] unit increase	Affymetrix [at least 2500000] (imputed)	N
793	chr7	27349478	27349479	rs6462008	29975729	Kim TH	2018-07-05	PLoS One	Identification of novel susceptibility loci associated with hepatitis B surface antigen seroclearance in chronic hepatitis B.	Hepatitis B surface antigen seroclearance in chronic hepatitis B infection	100 Korean ancestry cases, 100 Korean ancestry controls	NA	7p15.2	EVX1, HOXA13	rs6462008-T	0.42	3E-6		2.9411764	[1.85-4.55]	Illumina [1365088]	N
793	chr7	27351649	27351650	rs11563582	28498854	Liang J	2017-05-12	PLoS Genet	Single-trait and multi-trait genome-wide association analyses identify novel loci for blood pressure in African-ancestry populations.	Systolic blood pressure	Up to 31,155 African individuals	Up to 4,187 African individuals, up to 14,016 Korean ancestry individuals, up to 23,914 European ancestry individuals, up to 12,278 Hispanic individuals	7p15.2	EVX1, HOXA cluster	rs11563582-A	NR	5E-10		1.0102	[0.69-1.33] unit increase	Affymetrix, Illumina [at least 30072738] (imputed)	N
793	chr7	27351649	27351650	rs11563582	28498854	Liang J	2017-05-12	PLoS Genet	Single-trait and multi-trait genome-wide association analyses identify novel loci for blood pressure in African-ancestry populations.	Diastolic blood pressure	Up to 31,155 African individuals	Up to 4,187 African individuals, up to 14,016 Korean ancestry individuals, up to 23,914 European ancestry individuals, up to 12,278 Hispanic individuals	7p15.2	EVX1, HOXA cluster	rs11563582-A	NR	2E-11		0.6652	[0.47-0.86] unit increase	Affymetrix, Illumina [at least 30072738] (imputed)	N
793	chr7	27351649	27351650	rs11563582	28498854	Liang J	2017-05-12	PLoS Genet	Single-trait and multi-trait genome-wide association analyses identify novel loci for blood pressure in African-ancestry populations.	Blood pressure traits (multi-trait analysis)	Up to 31,155 African individuals	Up to 4,187 African individuals, up to 14,016 Korean ancestry individuals, up to 23,914 European ancestry individuals, up to 12,278 Hispanic individuals	7p15.2	EVX1, HOXA cluster	rs11563582-A	NR	2E-9	(Het)			Affymetrix, Illumina [at least 30072738] (imputed)	N
793	chr7	27351649	27351650	rs11563582	28498854	Liang J	2017-05-12	PLoS Genet	Single-trait and multi-trait genome-wide association analyses identify novel loci for blood pressure in African-ancestry populations.	Blood pressure traits (multi-trait analysis)	Up to 31,155 African individuals	Up to 4,187 African individuals, up to 14,016 Korean ancestry individuals, up to 23,914 European ancestry individuals, up to 12,278 Hispanic individuals	7p15.2	EVX1, HOXA cluster	rs11563582-A	NR	2E-11	(Hom)			Affymetrix, Illumina [at least 30072738] (imputed)	N
794	chr7	27401150	27401151	rs550802285	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	349,856 European ancestry individuals, 91,908 East Asian ancestry individuals	NA	7p15.2		rs550802285-T	NR	4E-8		0.0606	[0.039-0.082] unit increase	Affymetrix, Illumina [20529536] (imputed)	N
794	chr7	27443336	27443337	rs10951164	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	7p15.2	AC004009.1	rs10951164-C	0.487	5E-16		0.0153	[0.012-0.019] unit increase	Affymetrix [18391927] (imputed)	N
794	chr7	27445957	27445957	rs67918676	30787463	Escala-Garcia M	2019-02-21	Br J Cancer	Genome-wide association study of germline variants and breast cancer-specific mortality.	Breast cancer specific mortality in estrogen receptor negative breast cancer	2,125 European ancestry cases, 14,047 European ancestry controls	NA	7p15.2	NR	rs67918676-?	NR	1E-7		1.274184	[1.16-1.39]	Affymetrix, Illumina [~ 10400000] (imputed)	N
794	chr7	27462666	27462666	rs200275272	34130359	Curtis SW	2021-06-15	Genet Epidemiol	FAT4 identified as a potential modifier of orofacial cleft laterality.	Left unilateral cleft lip and palate	98 Asian ancestry cases, 199 European ancestry cases, 340 Hispanic cases, 1 case, 1,626 controls	NA	7p15.2	NR	rs200275272-?		6E-7		1.59	[1.32-1.91]	Illumina [539473] (imputed)	N
794	chr7	27498419	27498420	rs10228450	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	7p15.2		rs10228450-?	NR	7E-13				NR [~ 8900000] (imputed)	N
794	chr7	27509207	27509208	rs10271999	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7p15.2		rs10271999-?	NR	7E-15				NR [~ 8900000] (imputed)	N
794	chr7	27519117	27519118	rs6462018	25820613	Warrington NM	2015-03-27	Hum Mol Genet	Genome-wide association study of blood lead shows multiple associations near ALAD.	Lead levels in blood	5,433 individuals	NA	7p15.2	EVX1, HIBADH	rs6462018-G	0.504	4E-6		0.084	[0.031-0.137] unit decrease	Illumina [6391392] (imputed)	N
795	chr7	27526291	27526292	rs11762112	30145303	Kimbrel NA	2018-07-17	Psychiatry Res	A genome-wide association study of suicide attempts and suicidal ideation in U.S. military veterans.	Suicide attempts	52 European ancestry cases, 70 cases, 680 European ancestry controls, 767 controls	NA	7p15.2	Intergenic	rs11762112-A	NR	8E-7		2.16		Illumina [2711511] (imputed)	N
795	chr7	27564861	27564862	rs6956484	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	7p15.2	NR	rs6956484-A	NR	7E-13		1.056	[1.04-1.07]	Affymetrix, Illumina [29235255] (imputed)	N
795	chr7	27566314	27566315	rs12700814	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	7p15.2		rs12700814-?	NR	3E-11				NR [~ 8900000] (imputed)	N
795	chr7	27571944	27571945	rs11767188	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	7p15.2		rs11767188-?	NR	3E-8				NR [~ 8900000] (imputed)	N
795	chr7	27600633	27600634	rs12673949	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	7p15.2	HIBADH	rs12673949-A	0.726	4E-9		0.0078	[0.0053-0.0103] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
795	chr7	27600633	27600634	rs12673949	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Alcohol consumption (drinks per week)	414,343 European ancestry individuals	NA	7p15.2	HIBADH	rs12673949-A	0.7238	8E-9		0.014402959	[0.0095-0.0193] unit increase	Affymetrix [11514936] (imputed)	N
795	chr7	27610433	27610433	rs5883088	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Urolithiasis	6,223 European ancestry cases, 482,123 European ancestry controls, 11,699 East Asian ancestry cases, 167,027 East Asian ancestry controls	NA	7p15.2		rs5883088-GC	NR	1E-9		0.12	[0.081-0.159] unit decrease	Affymetrix, Illumina [25845211] (imputed)	N
795	chr7	27625468	27625469	rs73071612	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	7p15.2		rs73071612-?	NR	2E-11				NR [~ 8900000] (imputed)	N
795	chr7	27626164	27626165	rs12539707	31729369	Howles SA	2019-11-15	Nat Commun	Genetic variants of calcium and vitamin D metabolism in kidney stone disease.	Kidney stones	6,536 British ancestry cases, 5,587 Japanese ancestry cases, 388,508 British ancestry controls, 28,870 Japanese ancestry controls	NA	7p15.2	HIBADH	rs12539707-T	0.3	1E-10		1.12	[1.08-1.16]	Affymetrix, Illumina [~ 5000000] (imputed)	N
795	chr7	27630472	27630473	rs1229605	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7p15.2		rs1229605-?	NR	2E-8				NR [~ 8900000] (imputed)	N
795	chr7	27653025	27653025	rs201865685	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	7p15.2		rs201865685-?	NR	8E-28		0.0319127	[0.026-0.038] unit increase	Affymetrix [20259828] (imputed)	N
795	chr7	27653206	27653207	rs7790498	31729369	Howles SA	2019-11-15	Nat Commun	Genetic variants of calcium and vitamin D metabolism in kidney stone disease.	Kidney stones	6,536 British ancestry cases, 388,508 British ancestry controls	NA	7p15.2	HIBADH	rs7790498-A	0.3	3E-10		1.13	[1.08-1.17]	Affymetrix [~ 8400000] (imputed)	N
796	chr7	27678184	27678185	rs2391448	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	7p15.2	TAX1BP1	rs2391448-T	0.7313	4E-9		0.01284476	[0.0086-0.0171] unit increase	Illumina [9339358] (imputed)	N
796	chr7	27751350	27751351	rs62454806	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Prostate cancer	7,438 White British ancestry cases, 118,206 White British ancestry controls	NA	7p15.2		rs62454806-?	NR	2E-8		0.892646	[0.85-0.93]	NR [680312]	N
796	chr7	27784948	27784949	rs10214930	25108383	Geller F	2014-08-10	Nat Genet	Genome-wide association analyses identify variants in developmental genes associated with hypospadias.	Hypospadias	1,006 European ancestry male child cases, 2,390 European ancestry male child controls, 3,096 European ancestry female child controls	1,972 European ancestry male child cases, 1,401 European ancestry male child controls, 405 European ancestry female child controls, 6 European ancestry child controls	7p15.2	TAX1BP1	rs10214930-G	0.764	8E-12		1.33	[NR]	Illumina [8207076] (imputed)	N
797	chr7	27789253	27789254	rs144919949	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7p15.2		rs144919949-?	NR	2E-10				NR [~ 8900000] (imputed)	N
797	chr7	27888013	27888014	rs11981911	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	7p15.2	NR	rs11981911-?	NR	8E-22				Affymetrix [NR]	N
797	chr7	27892835	27892836	rs11973028	30898391	Lawrenson K	2019-03-19	Gynecol Oncol	Genome-wide association studies identify susceptibility loci for epithelial ovarian cancer in east Asian women.	Epithelial ovarian cancer	3,238 East Asian ancestry cases, 4,083 East Asian ancestry controls	NA	7p15.2		rs11973028-?	NR	1E-6	(mucinous_all)	1.51		Illumina [11595112] (imputed)	N
798	chr7	27925644	27925645	rs10225163	22179738	Lai HM	2011-12-16	Rheumatology (Oxford)	Gout and type 2 diabetes have a mutual inter-dependent effect on genetic risk factors and higher incidences.	Gout	20 Han Chinese ancestry male gout cases, 42 Han Chinese ancestry male controls	NA	7p15.2	JAZF1	rs10225163-?		1E-7				Illumina [479403]	N
798	chr7	27932075	27932076	rs10244184	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	7p15.2		rs10244184-?	NR	9E-48		0.0342171	[0.03-0.039] unit increase	Affymetrix [20259828] (imputed)	N
798	chr7	27932075	27932076	rs10244184	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	7p15.2	JAZF1	rs10244184-T	0.744229	2E-10	(women)	0.0324671	[0.022-0.043] unit increase	NR [17166351] (imputed)	N
798	chr7	27932075	27932076	rs10244184	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	7p15.2	JAZF1	rs10244184-T	0.743659	3E-19		0.0335639	[0.026-0.041] unit increase	NR [17166351] (imputed)	N
798	chr7	27932075	27932076	rs10244184	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	7p15.2	JAZF1	rs10244184-T	0.743007	3E-9	(men)	0.0327193	[0.021-0.044] unit increase	NR [17166351] (imputed)	N
798	chr7	27934474	27934475	rs79589031	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	7p15.2	NR	rs79589031-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
798	chr7	27934474	27934475	rs79589031	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	7p15.2		rs79589031-?	NR	4E-9				NR [~ 8900000] (imputed)	N
798	chr7	27936242	27936243	rs916856	33382417	Batai K	2020-12-31	J Nutr	Genome-Wide Association Study of Response to Selenium Supplementation and Circulating Selenium Concentrations in Adults of European Descent.	Response to selenium supplementation (change in plasma selenium concentration)	428 European ancestry individuals	NA	7p15.2	JAZF1	rs916856-?	0.408	7E-6		11.62	[6.62-16.62] unit increase	Illumina [7663546] (imputed)	N
798	chr7	27939888	27939889	rs80278508	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Stromal-cell-derived factor 1 alpha levels	5,998 Finnish ancestry individuals	NA	7p15.1	NR	rs80278508-C		2E-6		0.464	[0.23-0.7] SD units decrease	NR [10700000] (imputed)	N
798	chr7	27953980	27953981	rs10275982	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	7p15.1	NR	rs10275982-?	NR	5E-10				Affymetrix [~ 8270000] (imputed)	N
798	chr7	27961285	27961286	rs35135622	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	7p15.1	JAZF1	rs35135622-A	NR	2E-8		0.0184124	[0.012-0.025] unit increase	Affymetrix [321114] (imputed)	N
798	chr7	27966983	27966984	rs6968704	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	7p15.1	JAZF1	rs6968704-C	0.68377	1E-16		0.0185188	[0.014-0.023] unit increase	NR [13737936] (imputed)	N
798	chr7	27968192	27968193	rs2040666	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	7p15.1		rs2040666-?	NR	4E-44		0.0314933	[0.027-0.036] unit decrease	Affymetrix [20259828] (imputed)	N
798	chr7	27970152	27970153	rs10239787	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	7p15.1	JAZF1	rs10239787-C	0.672632	3E-68		0.0387088	[0.034-0.043] unit increase	NR [13737936] (imputed)	N
798	chr7	27970152	27970153	rs10239787	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	7p15.1		rs10239787-?	NR	1E-56				NR [~ 8900000] (imputed)	N
798	chr7	27970152	27970153	rs10239787	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	7p15.1		rs10239787-?	NR	5E-49		0.0324828	[0.028-0.037] unit increase	Affymetrix [20259828] (imputed)	N
798	chr7	27971379	27971380	rs11975615	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	7p15.1	NR	rs11975615-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
798	chr7	27976562	27976563	rs10486567	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Prostate cancer	11,599 European ancestry cases, 199,628 European ancestry controls, 5,672 East Asian ancestry cases, 84,660 East Asian ancestry controls	NA	7p15.1		rs10486567-A	NR	2E-23		0.1503	[0.12-0.18] unit decrease	Affymetrix, Illumina [25775424] (imputed)	N
798	chr7	27976562	27976563	rs10486567	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Prostate cancer	7,438 White British ancestry cases, 118,206 White British ancestry controls	NA	7p15.1		rs10486567-?	NR	1E-11		0.866676	[0.83-0.91]	NR [680312]	N
798	chr7	27976562	27976563	rs10486567	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 91,972 European ancestry controls	6,852 European ancestry cases, 193,117 European ancestry controls	7p15.1	NR	rs10486567-G	0.76672338	1E-8		1.1367551	[1.09-1.19]	Affymetrix, Illumina [20400945] (imputed)	N
798	chr7	27976562	27976563	rs10486567	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	7p15.1	NR	rs10486567-G	NR	2E-38		1.117	[1.10-1.14]	Affymetrix, Illumina [29235255] (imputed)	N
798	chr7	27976562	27976563	rs10486567	33293427	Emami NC	2020-12-08	Cancer Res	A large-scale association study detects novel rare variants, risk genes, functional elements, and polygenic architecture of prostate cancer susceptibility.	Prostate cancer	14,113 European ancestry cases, 194,140 European ancestry controls	NA	7p15.1	NR	rs10486567-G	NR	2E-19		1.17	NR	Affymetrix [at least 232408] (imputed)	N
798	chr7	27976562	27976563	rs10486567	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Prostate cancer	10,792 European ancestry cases, 410,350 European ancestry controls	NA	7p15.1		rs10486567-G	NR	3E-18		1.1659	NR	Affymetrix [7846216] (imputed)	N
798	chr7	27976562	27976563	rs10486567	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	7p15.1		rs10486567-G	NR	3E-14		1.16	[1.117-1.206]	Affymetrix [7846216] (imputed)	N
798	chr7	27976562	27976563	rs10486567	31562322	Takata R	2019-09-27	Nat Commun	12 new susceptibility loci for prostate cancer identified by genome-wide association study in Japanese population.	Prostate cancer	5,088 Japanese ancestry cases, 10,682 Japanese ancestry controls	4,818 Japanese ancestry cases, 73,261 Japanese ancestry controls	7p15.1	JAZF1	rs10486567-G	0.099	6E-6		1.1947432	NR	Illumina [7742602] (imputed)	N
798	chr7	27976562	27976563	rs10486567	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	7p15.1	NR	rs10486567-G	0.76	2E-45		1.14	[1.12-1.16]	Illumina [20370935] (imputed)	N
798	chr7	27976562	27976563	rs10486567	28139693	Hoffmann TJ	2017-01-31	Nat Commun	Genome-wide association study of prostate-specific antigen levels identifies novel loci independent of prostate cancer.	Prostate-specific antigen levels	28,503 European ancestry individuals	2,716 Latino individuals, 2,518 East Asian ancestry individuals, 1,585 African American individuals, 6,193 European ancestry individuals (later diagnosed with prostate cancer), 5,603 European ancestry individuals	7p15.1	JAZF1	rs10486567-G	0.76	4E-19		0.0575792	[0.045-0.07] unit increase	Affymetrix [10109774] (imputed)	N
798	chr7	27976562	27976563	rs10486567	26034056	Hoffmann TJ	2015-06-01	Cancer Discov	A large multiethnic genome-wide association study of prostate cancer identifies novel risk variants and substantial ethnic differences.	Prostate cancer	6,406 European ancestry cases, 601 African American cases, 288 East Asian ancestry cases, 488 Latino cases30,866 European ancestry controls, 1,650 African American controls, 2,938 East Asian ancestry controls, 3,141 Latino controls	4,599 European ancestry cases, 2,265 African American cases, 2,940 European ancestry controls, 2,414 African American controls	7p15.1	NR	rs10486567-G	0.77	3E-9	(European)	1.17	[1.11-1.23]	Affymetrix [up to 19977088] (imputed)	N
798	chr7	27976562	27976563	rs10486567	26034056	Hoffmann TJ	2015-06-01	Cancer Discov	A large multiethnic genome-wide association study of prostate cancer identifies novel risk variants and substantial ethnic differences.	Prostate cancer	6,406 European ancestry cases, 601 African American cases, 288 East Asian ancestry cases, 488 Latino cases30,866 European ancestry controls, 1,650 African American controls, 2,938 East Asian ancestry controls, 3,141 Latino controls	4,599 European ancestry cases, 2,265 African American cases, 2,940 European ancestry controls, 2,414 African American controls	7p15.1	NR	rs10486567-G	0.77	3E-11		1.17	[1.12-1.22]	Affymetrix [up to 19977088] (imputed)	N
798	chr7	27976562	27976563	rs10486567	18264096	Thomas G	2008-02-10	Nat Genet	Multiple loci identified in a genome-wide association study of prostate cancer.	Prostate cancer	1,172 European ancestry cases, 1,157 European ancestry controls	3,941 European ancestry cases, 3,964 European ancestry controls	7p15.1	JAZF1	rs10486567-G	0.77	2E-6		1.12	[1.02-1.25]	Illumina [527869]	N
798	chr7	27977362	27977363	rs7808935	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Prostate cancer	5,408 Japanese ancestry cases, 103,939 Japanese ancestry controls	NA	7p15.1		rs7808935-C	0.900107071	5E-8		0.8309912	[0.777539828-0.888117121]	Illumina [8919992] (imputed)	N
798	chr7	27977362	27977363	rs7808935	26034056	Hoffmann TJ	2015-06-01	Cancer Discov	A large multiethnic genome-wide association study of prostate cancer identifies novel risk variants and substantial ethnic differences.	Prostate cancer	6,406 European ancestry cases, 601 African American cases, 288 East Asian ancestry cases, 488 Latino cases30,866 European ancestry controls, 1,650 African American controls, 2,938 East Asian ancestry controls, 3,141 Latino controls	4,599 European ancestry cases, 2,265 African American cases, 2,940 European ancestry controls, 2,414 African American controls	7p15.1	NR	rs7808935-T	0.766	3E-11		1.17	[1.12-1.22]	Affymetrix [up to 19977088] (imputed)	N
798	chr7	27989402	27989403	rs757138	34012061	Sipeky C	2021-05-19	Prostate Cancer Prostatic Dis	Novel prostate cancer susceptibility gene SP6 predisposes patients to aggressive disease.	Prostate cancer	2,738 Finnish ancestry cases, 2,400 Finnish ancestry controls	NA	7p15.1	JAZF1	rs757138-C	0.31	1E-8		0.78	[0.72-0.85] unit decrease	Illumina [185478]	N
798	chr7	27989402	27989403	rs757138	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	7p15.1	JAZF1	rs757138-T	0.6889	3E-8		0.0348	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
798	chr7	27989767	27989768	rs739704	27432226	Kar SP	2016-07-17	Cancer Discov	Genome-Wide Meta-Analyses of Breast, Ovarian, and Prostate Cancer Association Studies Identify Multiple New Susceptibility Loci Shared by at Least Two Cancer Types.	Breast cancer, ovarian cancer or prostate cancer (pleiotropy)	62,533 European ancestry breast cancer female cases, 60,976 European ancestry controls, 15,437 European ancestry invasive epithelial ovarian cancer female cases, 30,845 European ancestry controls, 34,379 European ancestry prostate cancer male cases, 33,164 European ancestry controls	NA	7p15.1	JAZF1	rs739704-A	0.2515	3E-14		0.0542	[0.04-0.068] unit decrease	Illumina [NR]	N
798	chr7	27993156	27993157	rs62451152	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Prostate cancer	5,672 East Asian ancestry cases, 84,660 East Asian ancestry controls	NA	7p15.1		rs62451152-C	0.04164962	1E-8		0.29718286	[0.19-0.4] unit increase	Illumina [13406905] (imputed)	N
798	chr7	27994757	27994758	rs1557779	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7p15.1		rs1557779-?	NR	5E-27				NR [~ 8900000] (imputed)	N
798	chr7	28003515	28003516	rs4722748	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	7p15.1	JAZF1, TAX1BP1, JAZF1-AS1	rs4722748-?		9E-6		1.218324	[1.12-1.30]	Illumina [9389922] (imputed)	N
798	chr7	28004197	28004198	rs4722750	23400010	Del-Aguila JL	2013-02-12	Pharmacogenomics J	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NA	7p15.1	JAZF1	rs4722750-T	0.1	9E-6	(EA-triglyceride response)	31.88	[17.85-45.91] mg/dL decrease	Affymetrix, Illumina [> 2000000] (imputed)	N
798	chr7	28017969	28017970	rs11983606	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	7p15.1	TAX1BP1	rs11983606-?	NR	9E-6	(PC 38:4)	1.1487901	[0.64-1.66] unit decrease	Affymetrix [at least 2500000] (imputed)	N
798	chr7	28028431	28028432	rs38514	33290408	Ray D	2020-12-08	PLoS Genet	A powerful method for pleiotropic analysis under composite null hypothesis identifies novel shared loci between Type 2 Diabetes and Prostate Cancer.	Type 2 diabetes or prostate cancer (pleiotropy)	62,892 European ancestry T2D cases, 79,194 European ancestry PrCa cases, 659,536 European ancestry controls	NA	7p15.1	JAZF1	rs38514-?		8E-10				Illumina [5041948] (imputed)	N
798	chr7	28039915	28039916	rs6945134	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-like 1 protein levels	252 European ancestry individuals	NA	7p15.1		rs6945134-G	NR	9E-6		0.21147	[0.12-0.3] unit decrease	Illumina [NR] (imputed)	N
798	chr7	28039915	28039916	rs6945134	34130359	Curtis SW	2021-06-15	Genet Epidemiol	FAT4 identified as a potential modifier of orofacial cleft laterality.	Left unilateral cleft lip	68 Asian ancestry cases, 78 European ancestry cases, 70 Hispanic cases, 1,626 controls	NA	7p15.1	NR	rs6945134-?		7E-6		2.8	[1.78-4.39]	Illumina [539473] (imputed)	N
799	chr7	28096198	28096199	rs7785730	24722205	Kwak SH	2014-04-17	Hum Mol Genet	A genome-wide association study on thyroid function and anti-thyroid peroxidase antibodies in Koreans.	Free thyroxine concentration	2,789 Korean ancestry individuals	829 Korean ancestry individuals	7p15.1	JAZF1	rs7785730-G	0.48	6E-6		0.106	[0.061-0.151] ng/dl increase	Affymetrix [1418709] (imputed)	N
799	chr7	28114035	28114036	rs6965411	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	7p15.1	JAZF1	rs6965411-G	NR	8E-9		0.018061	[0.012-0.024] unit decrease	Affymetrix [321114] (imputed)	N
799	chr7	28122976	28122977	rs10951191	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	7p15.1	NR	rs10951191-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
799	chr7	28122976	28122977	rs10951191	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (mother's age at death or mother's attained age)	up to 699,000 individuals	NA	7p15.1	NR	rs10951191-A		4E-6				Illumina [458525]	N
799	chr7	28122976	28122977	rs10951191	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	7p15.1	JAZF1	rs10951191-A	0.743	6E-6		0.036	[0.021-0.051] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
799	chr7	28128263	28128264	rs13234714	34387878	Kim KY	2021-08-13	Hepatology	Genome-wide association of individual vulnerability with alcoholic liver disease: A Korean Genome and Epidemiology Study.	Alcohol-associated liver disease in heavy drinkers	1,185 Korean ancestry cases, 2,246 Korean ancestry controls	NA	7p15.1		rs13234714-?	NR	3E-6		1.334	[1.182-1.506]	Affymetrix [7975321] (imputed)	N
799	chr7	28138638	28138639	rs6958010	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	334,944 European ancestry, NR ancestry individuals	NA	7p15.1		rs6958010-?	NR	5E-8				Affymetrix [NR] (imputed)	N
799	chr7	28138638	28138639	rs6958010	29273593	Duan L	2017-12-22	Stroke	Novel Susceptibility Loci for Moyamoya Disease Revealed by a Genome-Wide Association Study.	Moyamoya disease	755 Han Chinese ancestry cases, 2,031 Han Chinese ancestry controls	724 Han Chinese ancestry cases, 3,043 Han Chinese ancestry controls	7p15.1	JAZF1	rs6958010-A	0.45	2E-13		1.37	[NR]	Illumina [747089]	N
799	chr7	28140851	28140852	rs2391496	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	7p15.1	JAZF1	rs2391496-C	NR	4E-11		0.0244031	[0.017-0.032] unit increase	Affymetrix [321114] (imputed)	N
799	chr7	28140950	28140951	rs78823938	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	7p15.1	NR	rs78823938-?	NR	5E-9				Affymetrix [~ 8270000] (imputed)	N
799	chr7	28140950	28140951	rs78823938	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	7p15.1	NR	rs78823938-?	NR	9E-9				Affymetrix [~ 8270000] (imputed)	N
799	chr7	28140950	28140951	rs78823938	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	7p15.1	JAZF1, JAZF1-AS1	rs78823938-A	0.079442	5E-8		1.0653667	[1.04-1.09]	Affymetrix [8274727] (imputed)	N
799	chr7	28142087	28142088	rs10274928	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	7p15.1	JAZF1	rs10274928-A	0.4857	9E-11		0.1592	[0.11-0.21] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
799	chr7	28142185	28142186	rs10245867	34127860	Robertson CC	2021-06-14	Nat Genet	Fine-mapping, trans-ancestral and genomic analyses identify causal variants, cells, genes and drug targets for type 1 diabetes.	Type 1 diabetes	20,065 European ancestry cases, 33,065 European ancestry controls, 1,045 other-admixed ancestry cases, 1,103 other-admixed ancestry controls, 1,043 African ancestry cases, 3,206 African ancestry controls	NA	7p15.1	JAZF1	rs10245867-T	0.331	3E-8		0.928		Illumina [715631] (imputed)	N
799	chr7	28142185	28142186	rs10245867	34127860	Robertson CC	2021-06-14	Nat Genet	Fine-mapping, trans-ancestral and genomic analyses identify causal variants, cells, genes and drug targets for type 1 diabetes.	Type 1 diabetes	20,065 European ancestry cases, 33,065 European ancestry controls, 1,045 other-admixed ancestry cases, 1,103 other-admixed ancestry controls, 1,043 African ancestry cases, 3,206 African ancestry controls	NA	7p15.1	JAZF1	rs10245867-T	0.331	3E-8		0.928		Illumina [715631] (imputed)	N
799	chr7	28142185	28142186	rs10245867	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	7p15.1	JAZF1	rs10245867-T	NR	1E-11		1.0696331	NR	Affymetrix, Illumina [8278136] (imputed)	N
799	chr7	28142185	28142186	rs10245867	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	7p15.1		rs10245867-?	NR	5E-21				NR [~ 8900000] (imputed)	N
799	chr7	28142185	28142186	rs10245867	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls	NA	7p15.1	JAZF1	rs10245867-?	NR	4E-8		1.14	[1.09-1.19]	Illumina [at least 5000000] (imputed)	N
799	chr7	28142212	28142213	rs28576490	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	7p15.1	JAZF1	rs28576490-C	NR	2E-8		0.0183686	[0.012-0.025] unit increase	Affymetrix [319769] (imputed)	N
799	chr7	28142212	28142213	rs28576490	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	7p15.1	JAZF1	rs28576490-C	NR	5E-9		0.0190926	[0.013-0.025] unit increase	Affymetrix [319769] (imputed)	N
799	chr7	28142212	28142213	rs28576490	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	7p15.1	JAZF1	rs28576490-C	0.250163	4E-10		0.016179156	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
799	chr7	28142212	28142213	rs28576490	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	7p15.1	NR	rs28576490-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
799	chr7	28144800	28144801	rs1109484	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	7p15.1	JAZF1	rs1109484-C	NR	3E-8		0.017663	[0.011-0.024] unit increase	Affymetrix [321114] (imputed)	N
799	chr7	28147451	28147452	rs4722754	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin I concentration	1,606 African American individuals	NA	7p15.1		rs4722754-?	NR	1E-6		0.27	[0.16-0.38] unit increase	Affymetrix, Illumina [NR] (imputed)	N
799	chr7	28149254	28149255	rs57585717	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (adult onset)	26,582 European ancestry cases, 300,671 European ancestry controls	16,297 European ancestry cases, 217,711 European ancestry controls	7p15.1	JAZF1	rs57585717-A	0.118	2E-6		1.051	[1.03-1.07]	Affymetrix [9000000] (imputed)	N
799	chr7	28149254	28149255	rs57585717	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	7p15.1	JAZF1	rs57585717-A	NR	2E-13		1.08	[1.06-1.1]	Affymetrix [9000000] (imputed)	N
799	chr7	28149711	28149712	rs78615563	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	7p15.1	NR	rs78615563-?	NR	3E-15				Affymetrix [~ 8270000] (imputed)	N
799	chr7	28150185	28150186	rs11761045	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	7p15.1	JAZF1	rs11761045-A	NR	4E-10		0.022309	[0.015-0.029] unit increase	Affymetrix [321114] (imputed)	N
799	chr7	28156228	28156229	rs59996657	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	7p15.1	NR	rs59996657-A	NR	4E-10		0.0298	[0.02-0.039] unit decrease	Affymetrix [9000000] (imputed)	N
799	chr7	28156605	28156606	rs4722758	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	7p15.1		rs4722758-G	NR	2E-22		0.0252	[0.02-0.03] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
799	chr7	28156605	28156606	rs4722758	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	7p15.1	JAZF1	rs4722758-G	0.201379	1E-9		0.016908234	[0.011-0.022] unit increase	Affymetrix [93095623] (imputed)	N
799	chr7	28156605	28156606	rs4722758	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	7p15.1	JAZF1	rs4722758-G	0.201368	1E-19		0.025140513	[0.02-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
799	chr7	28156605	28156606	rs4722758	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	7p15.1	JAZF1	rs4722758-G	0.1992	4E-14				Affymetrix [15688218] (imputed)	N
799	chr7	28156605	28156606	rs4722758	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic disease (asthma, hay fever or eczema)	106,772 European ancestry cases, 239,773 European ancestry controls	83,335 cases, 34,934 controls	7p15.1	NR	rs4722758-G	0.1992	2E-16		1.057	[1.043-1.07]	Affymetrix [15688218] (imputed)	N
799	chr7	28156605	28156606	rs4722758	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma onset (childhood vs adult)	13,962 European ancestry childhood onset cases, 14,873 European ancestry adult onset cases	31,002 European ancestry childhood onset cases, 16,297 European ancestry adult onset cases	7p15.1	JAZF1	rs4722758-G	0.198	5E-6		1.057	[1.03-1.08]	Affymetrix [9000000] (imputed)	N
799	chr7	28156605	28156606	rs4722758	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	7p15.1	JAZF1	rs4722758-?	NR	3E-28		1.103	[1.09-1.12]	Affymetrix [9000000] (imputed)	N
799	chr7	28156605	28156606	rs4722758	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	7p15.1	JAZF1	rs4722758-G	NR	6E-18		1.076	[1.06-1.09]	Affymetrix [9000000] (imputed)	N
799	chr7	28156886	28156887	rs6977955	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p15.1	NR	rs6977955-T	0.292932	1E-23				Affymetrix, Illumina [23472807] (imputed)	N
799	chr7	28156886	28156887	rs6977955	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	7p15.1	JAZF1	rs6977955-T	0.21	7E-13		1.046	[1.03-1.06]	Affymetrix, Illumina [8307659] (imputed)	N
799	chr7	28160112	28160113	rs9648346	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	7p15.1	NR	rs9648346-G	0.203178	3E-25		0.024414	[0.02-0.029] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
799	chr7	28160112	28160113	rs9648346	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	7p15.1	NR	rs9648346-G	0.1994	2E-15		1.06	[1.045-1.074]	Affymetrix [15688218] (imputed)	N
799	chr7	28160112	28160113	rs9648346	30013184	Waage J	2018-07-16	Nat Genet	Genome-wide association and HLA fine-mapping studies identify risk loci and genetic pathways underlying allergic rhinitis.	Allergic rhinitis	59,762 European and unknown ancestry cases, 152,358 European and unknown ancestry controls	60,720 European ancestry cases, 618,527 European ancestry controls	7p15.1	JAZF1, TAX1BP1	rs9648346-G	0.2158	3E-14		1.05	[1.03-1.06]	Affymetrix, Illumina, Perlegen [16531985] (imputed)	N
799	chr7	28162095	28162096	rs10447553	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	7p15.1	JAZF1	rs10447553-T	NR	1E-8		0.0191344	[0.013-0.026] unit increase	Affymetrix [321016] (imputed)	N
799	chr7	28162095	28162096	rs10447553	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	7p15.1	NR	rs10447553-?	NR	3E-18				Affymetrix [~ 8270000] (imputed)	N
799	chr7	28162673	28162674	rs12531540	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	NA	7p15.1	JAZF1	rs12531540-C		3E-8		1.15	[NR]	Illumina [> 644674] (imputed)	N
799	chr7	28166441	28166442	rs740122	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Tyrosine levels	114,913 European ancestry individuals	NA	7p15.1		rs740122-G	0.782531	4E-13		0.0360247	[0.026-0.046] unit increase	NR [11722792] (imputed)	N
799	chr7	28166441	28166442	rs740122	33310728	Ha E	2020-12-11	Ann Rheum Dis	Large-scale meta-analysis across East Asian and European populations updated genetic architecture and variant-driven biology of rheumatoid arthritis, identifying 11 novel susceptibility loci.	Rheumatoid arthritis	14,361 European ancestry cases, 43,923 European ancestry controls, 8,267 East Asian ancestry cases, 244,741 East Asian ancestry controls	NA	7p15.1		rs740122-A	NR	5E-9		0.92	[0.9-0.95]	NR [13810676] (imputed)	N
799	chr7	28167390	28167391	rs10254284	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	7p15.1	JAZF1	rs10254284-T	0.6595	6E-15		0.02934456	[0.022-0.037] unit increase	Affymetrix [~ 2500000] (imputed)	N
799	chr7	28167390	28167391	rs10254284	26606652	Alarcon-Riquelme ME	2015-11-25	Arthritis Rheumatol	Genome-Wide Association Study in an Amerindian Ancestry Population Reveals Novel Systemic Lupus Erythematosus Risk Loci and the Role of European Admixture.	Systemic lupus erythematosus	862 Native American ancestry-enriched North American cases, 531 Native American ancestry-enriched South American cases, 1,973 Native American ancestry-enriched North American controls, 344 Native American ancestry-enriched South American controls	NA	7p15.1	JAZF1	rs10254284-A	0.583	8E-6		1.29	[1.16-1.42]	Illumina [580483] (imputed)	N
799	chr7	28168745	28168749	rs1160871	34103634	Valette K	2021-06-08	Commun Biol	Prioritization of candidate causal genes for asthma in susceptibility loci derived from UK Biobank.	Asthma	56,167 White-British ancestry cases, 352,255 White-British ancestry controls	NA	7p15.1	TG, CCN4	rs1160871-T	0.285803999726937	4E-8		0.039907195	[0.026-0.054] unit decrease	Affymetrix [35186738] (imputed)	N
799	chr7	28168745	28168749	rs1160871	34103634	Valette K	2021-06-08	Commun Biol	Prioritization of candidate causal genes for asthma in susceptibility loci derived from UK Biobank.	Asthma	56,167 White-British ancestry cases, 352,255 White-British ancestry controls	NA	7p15.1	JAZF1	rs1160871-G	0.208519936271206	6E-15		0.06272076	[0.047-0.078] unit increase	Affymetrix [35186738] (imputed)	N
799	chr7	28172013	28172014	rs2189965	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	7p15.1	JAZF1	rs2189965-T	0.202478	3E-21		0.025978142	[0.021-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
799	chr7	28172585	28172586	rs917115	31959851	Olafsdottir TA	2020-01-20	Nat Commun	Eighty-eight variants highlight the role of T cell regulation and airway remodeling in asthma pathogenesis.	Asthma	16,247 European ancestry cases, 346,486 European ancestry controls, 52,942 cases, 355,713 controls	NA	7p15.1	JAZF1, JAZF1-AS1, CREB5, TAX1BP1, HIBADH, TSL	rs917115-C	0.20851	9E-13		1.05671	[1.04-1.07]	Affymetrix [32463443] (imputed)	N
799	chr7	28172585	28172586	rs917115	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (childhood onset)	9,433 British ancestry cases, 318,237 British ancestry controls	NA	7p15.1	JAZF1, TAX1BP1, CREB5	rs917115-C	0.208	2E-9		1.112	[1.074-1.152]	Affymetrix [10894596] (imputed)	N
799	chr7	28172731	28172732	rs702814	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	7p15.1	JAZF1	rs702814-T	0.4861	2E-8		0.1963	[0.13-0.26] mmHg decrease	Affymetrix [NR] (imputed)	N
799	chr7	28172731	28172732	rs702814	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	7p15.1	JAZF1	rs702814-?	NR	2E-11		1.15	[1.10-1.20]	Illumina [at least 5000000] (imputed)	N
799	chr7	28172738	28172739	rs917116	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	7p15.1	JAZF1-AS1	rs917116-T	0.788525	6E-17		0.00400822	[0.0031-0.0049] unit decrease	Affymetrix [13995440] (imputed)	N
799	chr7	28172738	28172739	rs917116	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD45RA on naive CD4+ T cell	2,910 Sardinian (founder/genetic isolate) ancestry individuals	NA	7p15.1		rs917116-G	0.25481	4E-9		0.1762	[0.12-0.23] unit increase	Illumina [17945511] (imputed)	N
799	chr7	28172738	28172739	rs917116	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	7p15.1	JAZF1	rs917116-C	0.21	3E-10		1.09		Illumina [161311]	N
799	chr7	28173521	28173522	rs702815	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	7p15.1	JAZF1	rs702815-C	NR	9E-9		0.019883	[0.013-0.027] unit increase	Affymetrix [127266] (imputed)	N
799	chr7	28174985	28174986	rs67250450	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	7p15.1	JAZF1	rs67250450-T	NR	6E-6		0.0859148	[0.049-0.123] unit increase	Illumina [8380626] (imputed)	N
799	chr7	28174985	28174986	rs67250450	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	7p15.1	JAZF1	rs67250450-T	0.79	2E-6	(EA)	0.09087	[0.053-0.128] unit increase	Illumina [8380626] (imputed)	N
799	chr7	28174985	28174986	rs67250450	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	7p15.1	JAZF1	rs67250450-T	0.79	3E-9	(EA)	1.11	[1.07-1.14]	Affymetrix, Illumina [up to 9739303] (imputed)	N
799	chr7	28174985	28174986	rs67250450	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	7p15.1	JAZF1	rs67250450-T	0.58	4E-9		1.1	[1.07-1.14]	Affymetrix, Illumina [up to 9739303] (imputed)	N
799	chr7	28176304	28176305	rs917117	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	7p15.1	JAZF1	rs917117-A	0.21	4E-23				NR [> 9500000] (imputed)	N
799	chr7	28176304	28176305	rs917117	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	7p15.1	JAZF1	rs917117-A	0.213387	2E-22		1.0746008	[1.05916592855987-1.09026073907999]	NR [9572556] (imputed)	N
799	chr7	28177300	28177301	rs11495981	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	7p15.1		rs11495981-C	0.8	3E-22				Affymetrix [10369434] (imputed)	N
799	chr7	28177300	28177301	rs11495981	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	7p15.1		rs11495981-C	0.8	1E-18				Affymetrix [10369434] (imputed)	N
799	chr7	28177300	28177301	rs11495981	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Respiratory diseases	approximately 459,000 European ancestry individuals	NA	7p15.1		rs11495981-?	NR	3E-17				NR [~ 8900000] (imputed)	N
799	chr7	28177300	28177301	rs11495981	29904099	Kottyan LC	2018-06-08	Genes Immun	Genetic variants at the 16p13 locus confer risk for eosinophilic esophagitis.	Eosinophilic esophagitis	1,210 European ancestry cases, 3,734 European ancestry controls	NA	7p15.1	JAZF1	rs11495981-?	0.206	9E-7		1.308		Illumina [79405]	N
799	chr7	28177337	28177338	rs849138	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Sunburns	approximately 344,000 European ancestry individuals	NA	7p15.1		rs849138-?	NR	4E-11				NR [~ 8900000] (imputed)	N
799	chr7	28178261	28178262	rs4722762	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	7p15.1	JAZF1	rs4722762-T	0.1957	2E-10		0.02905181	[0.02-0.038] unit decrease	Affymetrix [~ 2500000] (imputed)	N
799	chr7	28179257	28179258	rs13247499	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	150,545 East Asian ancestry individuals	NA	7p15.1		rs13247499-A	0.480681	4E-12		0.0234067	[0.017-0.03] unit increase	Illumina [13478866] (imputed)	N
799	chr7	28179257	28179258	rs13247499	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Alanine transaminase levels	134,182 Japanese ancestry individuals	NA	7p15.1	JAZF1	rs13247499-?	NR	1E-9		0.02295	[0.016-0.03] unit increase	Illumina [6108953] (imputed)	N
799	chr7	28179395	28179396	rs849139	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	7p15.1	JAZF1	rs849139-C	NR	1E-16		0.0243061	[0.019-0.03] unit increase	Affymetrix [321114] (imputed)	N
799	chr7	28179395	28179396	rs849139	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma or type 2 diabetes	28,862 European ancestry asthma cases, 422,048 European ancestry asthma controls, 159,208 European ancestry diabetes cases and controls	NA	7p15.1	NR	rs849139-?	NR	2E-8				Affymetrix [up to 8270000] (imputed)	N
799	chr7	28179395	28179396	rs849139	29273593	Duan L	2017-12-22	Stroke	Novel Susceptibility Loci for Moyamoya Disease Revealed by a Genome-Wide Association Study.	Moyamoya disease	755 Han Chinese ancestry cases, 2,031 Han Chinese ancestry controls	724 Han Chinese ancestry cases, 3,043 Han Chinese ancestry controls	7p15.1	JAZF1	rs849139-A	0.54	1E-15		1.4285715	[NR]	Illumina [747089]	N
799	chr7	28180098	28180099	rs57720904	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	7p15.1		rs57720904-T	NR	6E-22		0.0252	[0.02-0.03] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
800	chr7	28180555	28180556	rs864745	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body mass index and type 2 diabetes (pairwise)	418,152 European ancestry individuals, 31,291 East Asian, South Asian, Hispanic and African American ancestry individuals	NA	7p15.1	JAZF1	rs864745-T	0.4801	9E-12				Affymetrix, Illumina [2331072] (imputed)	N
800	chr7	28180555	28180556	rs864745	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	24,646 African American cases, 31,446 African American controls	NA	7p15.1	NR	rs864745-C	0.257	1E-8		0.083	[0.056-0.11] unit decrease	Affymetrix, Illumina [945603] (imputed)	N
800	chr7	28180555	28180556	rs864745	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	7p15.1	JAZF1	rs864745-T	0.4946	2E-19		1.071	NR	Affymetrix [9154080] (imputed)	N
800	chr7	28180555	28180556	rs864745	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	7p15.1	JAZF1	rs864745-C	0.5199	8E-18	(EA)	0.0851	[0.066-0.105] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
800	chr7	28180555	28180556	rs864745	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	7p15.1	JAZF1	rs864745-C	0.5199	4E-19		0.07	[0.054-0.086] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
800	chr7	28180555	28180556	rs864745	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Crohn's disease	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls	7p15.1	JAZF1, CREB5	rs864745-T	0.497	4E-9		1.087	[1.052-1.123]	Affymetrix, Illumina [1230000] (imputed)	N
800	chr7	28180555	28180556	rs864745	18372903	Zeggini E	2008-03-30	Nat Genet	Meta-analysis of genome-wide association data and large-scale replication identifies additional susceptibility loci for type 2 diabetes.	Type 2 diabetes	4,549 European ancestry cases, 5,579 European ancestry controls	24,194 European ancestry cases, 55,598 European ancestry controls	7p15.1	JAZF1	rs864745-T	0.50	5E-14		1.1	[1.07-1.13]	Affymetrix, Illumina [2202892] (imputed)	N
800	chr7	28183447	28183448	rs4722763	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Alanine aminotransferase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	7p15.1	JAZF1	rs4722763-?		2E-8		0.0215	[0.014-0.029] unit increase	Illumina [31500000] (imputed)	N
800	chr7	28183701	28183702	rs849140	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	7p15.1	JAZF1	rs849140-T	NR	3E-10		0.0196081	[0.014-0.026] unit increase	Affymetrix [323123] (imputed)	N
800	chr7	28183701	28183702	rs849140	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 29,0641 European ancestry controls	NA	7p15.1	JAZF1	rs849140-T	0.411436	6E-12		0.08129285	[0.058-0.104] unit increase	Affymetrix [7288503] (imputed)	N
800	chr7	28183701	28183702	rs849140	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	7p15.1	JAZF1	rs849140-T	0.4097	6E-13		0.0256	[0.019-0.033] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
800	chr7	28183701	28183702	rs849140	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	7p15.1	JAZF1	rs849140-T	0.4097	8E-11		0.0266	[0.019-0.035] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
800	chr7	28183701	28183702	rs849140	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	7p15.1	JAZF1	rs849140-?	0.4097	8E-12				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
800	chr7	28183701	28183702	rs849140	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in non-smokers	77,113 European ancestry women, 47,319 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	7p15.1	JAZF1	rs849140-T	0.4168	2E-9		0.0243	[0.016-0.032] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
800	chr7	28183701	28183702	rs849140	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in non-smokers	77,113 European ancestry women, 47,319 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	7p15.1	JAZF1	rs849140-T	0.4168	1E-6	(women)	0.0264	[0.016-0.037] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
800	chr7	28183701	28183702	rs849140	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	7p15.1	JAZF1	rs849140-T	0.4168	9E-7	(women)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
800	chr7	28183701	28183702	rs849140	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	7p15.1	JAZF1	rs849140-T	0.4168	7E-12				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
800	chr7	28183701	28183702	rs849140	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	7p15.1	JAZF1	rs849140-T	0.4168	3E-7	(men)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
800	chr7	28183701	28183702	rs849140	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	7p15.1	JAZF1	rs849140-T	0.4168	3E-7	(women)	0.025	[0.016-0.034] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
800	chr7	28183701	28183702	rs849140	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	7p15.1	JAZF1	rs849140-T	0.4168	3E-7	(men)	0.0254	[0.016-0.035] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
800	chr7	28183701	28183702	rs849140	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	7p15.1	JAZF1	rs849140-T	0.4168	3E-12		0.0253	[0.018-0.032] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
800	chr7	28183701	28183702	rs849140	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	7p15.1	JAZF1	rs849140-T	0.4042	5E-17	(EA)	0.0288	[0.022-0.035] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
800	chr7	28183701	28183702	rs849140	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	7p15.1	JAZF1	rs849140-T	0.4042	5E-13	(EA,women)	0.0317	[0.023-0.04] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
800	chr7	28183701	28183702	rs849140	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	7p15.1	JAZF1	rs849140-T	0.4042	4E-7	(EA, men)	0.0245	[0.015-0.034] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
800	chr7	28185090	28185091	rs849141	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	7p15.1		rs849141-G	NR	4E-13		0.0163	[0.012-0.021] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
800	chr7	28185090	28185091	rs849141	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	7p15.1	JAZF1	rs849141-A	0.2922	7E-13	(EA, women)	0.0355	[0.026-0.045] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
800	chr7	28185090	28185091	rs849141	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	7p15.1	JAZF1	rs849141-A	0.2922	5E-7	(EA,men)	0.0278	[0.017-0.039] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
800	chr7	28185090	28185091	rs849141	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	7p15.1	JAZF1	rs849141-A	0.2922	2E-16	(EA)	0.0319	[0.024-0.04] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
800	chr7	28185090	28185091	rs849141	19343178	Soranzo N	2009-04-03	PLoS Genet	Meta-analysis of genome-wide scans for human adult stature identifies novel Loci and associations with measures of skeletal frame size.	Height	12,611 European ancestry individuals	7,187 European ancestry individuals	7p15.1	JAZF1	rs849141-?	0.23	3E-11		0.08	[0.06-0.10] s.d. increase	Illumina [229216]	N
800	chr7	28185425	28185426	rs886663	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	7p15.1		rs886663-T	NR	1E-8		0.0131	[0.0086-0.0176] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
800	chr7	28185890	28185891	rs849142	33692100	Simcoe M	2021-03-10	Sci Adv	Genome-wide association study in almost 195,000 individuals identifies 50 previously unidentified genetic loci for eye color.	Eye color	157,485 European ancestry individuals	35,501 European ancestry individuals, 959 Han Chinese ancestry individuals, 677 Indian ancestry individuals	7p15.1		rs849142-T	0.499	3E-9	(EA)	5.933	NR z score decrease	Illumina [11532091] (imputed)	N
800	chr7	28185890	28185891	rs849142	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	2,018 European ancestry cases, 6,925 European ancestry controls	7p15.1	JAZF1	rs849142-A		9E-11		1.14	[1.10-1.19]	Illumina [644674]	N
800	chr7	28185890	28185891	rs849142	19838195	Gateva V	2009-11-01	Nat Genet	A large-scale replication study identifies TNIP1, PRDM1, JAZF1, UHRF1BP1 and IL10 as risk loci for systemic lupus erythematosus.	Systemic lupus erythematosus	1,310 European ancestry cases, 7,859 European ancestry controls	1,963 European ancestry cases, 4,329 European ancestry controls	7p15.1	JAZF1	rs849142-T	0.49	2E-9		1.19	[1.13-1.26]	Illumina [~ 2100000] (imputed)	N
800	chr7	28187111	28187111	rs10622246	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	7p15.1	NR	rs10622246-ATTTT	0.5008090000000001	2E-42		0.0111199	[0.0095-0.0128] unit increase	Affymetrix [16582909] (imputed)	N
800	chr7	28187111	28187111	rs10622246	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	7p15.1	NR	rs10622246-ATTTT	0.500194	8E-25		0.0124125	[0.01-0.0148] unit increase	Affymetrix [16585854] (imputed)	N
800	chr7	28187111	28187111	rs10622246	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	7p15.1	NR	rs10622246-ATTTT	0.5008090000000001	3E-24		0.00911253	[0.0073-0.0109] unit increase	Affymetrix [16582965] (imputed)	N
800	chr7	28187111	28187111	rs10622246	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	7p15.1	NR	rs10622246-ATTTT	0.500194	2E-12		0.0095001	[0.0067-0.0123] unit increase	Affymetrix [16585866] (imputed)	N
800	chr7	28187343	28187344	rs73300638	23603761	Hinks A	2013-04-21	Nat Genet	Dense genotyping of immune-related disease regions identifies 14 new susceptibility loci for juvenile idiopathic arthritis.	Juvenile idiopathic arthritis (oligoarticular or rheumatoid factor-negative polyarticular)	2,816 European ancestry cases, 13,056 European ancestry controls	NA	7p15.1	JAZF1	rs73300638-C	0.11	1E-7	(additive model)	1.28	[1.17-1.41]	Illumina [123003]	N
800	chr7	28187414	28187415	rs1708301	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	7p15.1	JAZF1	rs1708301-C	0.8509	2E-18		0.0232	[0.018-0.028] unit decrease	Affymetrix [18391927] (imputed)	N
800	chr7	28187805	28187806	rs1635851	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	7p15.1	NR	rs1635851-?	NR	6E-52				Affymetrix [~ 8270000] (imputed)	N
800	chr7	28187805	28187806	rs1635851	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	7p15.1	JAZF1	rs1635851-T	0.5864	7E-15		0.0535	[0.04-0.067] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
800	chr7	28188994	28188995	rs4719925	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	7p15.1		rs4719925-G	NR	2E-13		0.0194	[0.014-0.024] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
800	chr7	28189082	28189083	rs1029534	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	7p15.1	JAZF1	rs1029534-T	NR	9E-16		0.026844	[0.02-0.033] unit increase	Affymetrix [323123] (imputed)	N
800	chr7	28189082	28189083	rs1029534	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	7p15.1	JAZF1	rs1029534-T	0.31	8E-14		1.18	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
800	chr7	28189410	28189411	rs1635852	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	7p15.1		rs1635852-T	0.494043	9E-9		0.0221716	[0.015-0.03] unit decrease	NR [11722792] (imputed)	N
800	chr7	28189410	28189411	rs1635852	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very small VLDL	115,082 European ancestry individuals	NA	7p15.1		rs1635852-T	0.494043	3E-8		0.0220727	[0.014-0.03] unit decrease	NR [11722792] (imputed)	N
800	chr7	28189410	28189411	rs1635852	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	7p15.1		rs1635852-?	NR	2E-16		0.00748161	[0.0057-0.0093] unit increase	NR [NR]	N
800	chr7	28189410	28189411	rs1635852	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	200,622 European ancestry individuals	NA	7p15.1	JAZF1	rs1635852-T	0.5052	1E-7		0.0082	[0.0051-0.0113] unit increase	Affymetrix, Illumina [34064007] (imputed)	N
800	chr7	28189410	28189411	rs1635852	32339537	Roberts V	2020-04-24	J Invest Dermatol	Genome wide association study identifies genetic associations with perceived age.	Youthful appearance (self-reported)	423,992 European ancestry individuals	NA	7p15.1	JAZF1	rs1635852-T	0.493347	2E-9		1.0263653	NR	Affymetrix [~ 9600000] (imputed)	N
800	chr7	28189410	28189411	rs1635852	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	7p15.1	NR	rs1635852-T	0.492366	1E-11		0.0133721	[0.0095-0.0172] unit increase	NR [NR]	N
800	chr7	28189410	28189411	rs1635852	31118516	Flannick J	2019-05-22	Nature	Exome sequencing of 20,791 cases of type 2 diabetes and 24,440 controls.	Type 2 diabetes	2,277 African American cases, 3,098 East Asian ancestry cases, 3,704 European ancestry cases, 6,215 Hispanic/Latino cases, 2,939 South Asian ancestry cases, 2,283 African American controls, 2,921 East Asian ancestry controls, 3,514 European ancestry controls, 5,939 Hispanic/Latino controls, 3,022 South Asian ancestry controls	NA	7p15.1	JAZF1	rs1635852-T	0.34	4E-9		1.12	NR	Affymetrix, Illumina [up to 35256845] (imputed)	N
800	chr7	28189410	28189411	rs1635852	23740937	Martin JE	2013-06-10	Hum Mol Genet	A systemic sclerosis and systemic lupus erythematosus pan-meta-GWAS reveals new shared susceptibility loci.	Systemic lupus erythematosus and Systemic sclerosis	up to 2,761 European ancestry systemic sclerosis cases, 769 European ancestry systemic lupus erythematosus cases, 7,381 European ancestry controls	up to 1,578 European ancestry systemic sclerosis cases, 1,727 European ancestry systemic lupus erythematosus cases, 6,893 European ancestry controls	7p15.1	JAZF1	rs1635852-?		2E-8		1.14	[NR]	Illumina [NR]	N
800	chr7	28189410	28189411	rs1635852	18952825	Johansson A	2008-10-24	Hum Mol Genet	Common variants in the JAZF1 gene associated with height identified by linkage and genome-wide association analysis.	Height	3,925 European ancestry individuals	Up to 39,859 European ancestry individuals, Up to 1,148 African American individuals	7p15.1	JAZF1	rs1635852-A	NR	9E-10		0.25	[0.17-0.33] cm increase	Illumina [NR]	N
800	chr7	28189548	28189549	rs1635853	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	7p15.1	JAZF1	rs1635853-T	NR	1E-24		0.0319989	[0.026-0.038] unit increase	Affymetrix [321114] (imputed)	N
800	chr7	28189548	28189549	rs1635853	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	7p15.1	NR	rs1635853-?	NR	4E-20				Affymetrix [~ 8270000] (imputed)	N
800	chr7	28189548	28189549	rs1635853	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	7p15.1	NR	rs1635853-T	0.4142	6E-20		0.0159	[0.013-0.019] unit increase	NR [~ 27400000] (imputed)	N
800	chr7	28189548	28189549	rs1635853	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	315,284 European ancestry male individuals	NA	7p15.1	NR	rs1635853-T	0.4142	6E-20		0.0159	[0.013-0.019] unit increase	NR [~ 27400000] (imputed)	N
800	chr7	28189548	28189549	rs1635853	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	7p15.1	NA	rs1635853-T	0.4139	3E-9		0.0097	[0.0066-0.0128] unit decrease	NR [~ 27400000] (imputed)	N
800	chr7	28189945	28189946	rs1708299	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	7p15.1	JAZF1	rs1708299-A	0.2961	4E-6		0.0347	[0.02-0.049] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
800	chr7	28189945	28189946	rs1708299	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	7p15.1	JAZF1	rs1708299-A	0.2994	6E-14	(EA)	0.03	[0.022-0.038] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
800	chr7	28189945	28189946	rs1708299	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	7p15.1	JAZF1	rs1708299-A	0.2994	3E-7	(EA, women)	0.027	[0.017-0.037] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
800	chr7	28189945	28189946	rs1708299	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	7p15.1	JAZF1	rs1708299-A	0.2994	6E-11	(EA)	0.0304	[0.021-0.039] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
800	chr7	28189945	28189946	rs1708299	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	7p15.1	JAZF1	rs1708299-A	0.2987	8E-6	(EA,women)	0.0263	[0.015-0.038] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
800	chr7	28189945	28189946	rs1708299	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	7p15.1	JAZF1	rs1708299-?	0.2994	9E-13	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
800	chr7	28189945	28189946	rs1708299	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	7p15.1	JAZF1	rs1708299-?	0.2994	1E-6	(EA, women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
800	chr7	28189945	28189946	rs1708299	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	7p15.1	JAZF1	rs1708299-A	0.3	6E-25		0.04	[NR] unit increase	Affymetrix, Illumina [2834208] (imputed)	N
800	chr7	28190120	28190121	rs10276381	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	7p15.1	NR	rs10276381-?	NR	7E-10	(EA)			Affymetrix, Illumina [~ 9000000] (imputed)	N
800	chr7	28190723	28190730	rs750019913	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	7p15.1	JAZF1	rs750019913-ATTT	NR	1E-9		0.0309854	[0.021-0.041] unit increase	Affymetrix [323123] (imputed)	N
800	chr7	28191792	28191793	rs12055996	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	7p15.1	NR	rs12055996-T	0.91827	4E-9		0.0204948	[0.014-0.027] unit decrease	Affymetrix [15000001]	N
800	chr7	28192279	28192280	rs849133	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	7p15.1		rs849133-T	NR	1E-9		0.0131	[0.009-0.0172] unit decrease	Affymetrix, Illumina [20535873] (imputed)	N
800	chr7	28192279	28192280	rs849133	33893285	Guindo-Martinez M	2021-04-23	Nat Commun	The impact of non-additive genetic associations on age-related complex diseases.	Type 2 diabetes	6,967 European ancestry cases, 49,670 European ancestry controls	NA	7p15.1		rs849133-T	0.4979483	3E-11		0.89		Affymetrix [15533686] (imputed)	N
800	chr7	28192279	28192280	rs849133	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	7p15.1		rs849133-?	NR	2E-39				NR [~ 8900000] (imputed)	N
800	chr7	28192374	28192375	rs12154248	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	7p15.1		rs12154248-T	NR	6E-13		0.0203	[0.015-0.026] unit decrease	Affymetrix, Illumina [20535842] (imputed)	N
800	chr7	28192374	28192375	rs12154248	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	7p15.1	JAZF1	rs12154248-T	0.08	3E-20		9.2	z-score increase	Affymetrix [4312306] (imputed)	N
800	chr7	28192938	28192939	rs11367602	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	7p15.1	NR	rs11367602-T	NR	2E-9		0.0256	[0.017-0.034] unit increase	Affymetrix [9000000] (imputed)	N
800	chr7	28194396	28194397	rs860262	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	7p15.1		rs860262-A	NR	9E-23		0.0668	[0.053-0.08] unit decrease	Affymetrix, Illumina [25845091] (imputed)	N
800	chr7	28194396	28194397	rs860262	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	7p15.1		rs860262-A	NR	7E-14		0.0626	[0.046-0.079] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
800	chr7	28194396	28194397	rs860262	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Graves' disease	1,678 European ancestry cases, 456,942 European ancestry controls, 2,809 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	7p15.1		rs860262-A	NR	2E-8		0.1373	[0.089-0.185] unit decrease	Affymetrix, Illumina [25841587] (imputed)	N
800	chr7	28194396	28194397	rs860262	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	7p15.1	NR	rs860262-C	0.5683	3E-82		0.0747	[0.067-0.082] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
800	chr7	28194396	28194397	rs860262	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	7p15.1	NR	rs860262-A	0.502006	3E-23		0.0107	[0.0084-0.013] unit increase	Affymetrix [16582621] (imputed)	N
800	chr7	28194396	28194397	rs860262	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	7p15.1	NR	rs860262-A	0.502006	2E-17		0.00974742	[0.0073-0.0122] unit increase	Affymetrix [16582614] (imputed)	N
800	chr7	28194396	28194397	rs860262	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Type 2 diabetes	approximately 459,000 European ancestry individuals	NA	7p15.1		rs860262-?	NR	2E-18				NR [~ 8900000] (imputed)	N
800	chr7	28194396	28194397	rs860262	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	7p15.1	JAZF1	rs860262-?	NR	7E-9	(subset analysis)			Illumina [130052]	N
800	chr7	28196221	28196222	rs849134	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	7p15.1		rs849134-G	0.210601574	2E-8		0.06382882	[0.042-0.086] unit decrease	Illumina [13429769] (imputed)	N
800	chr7	28196221	28196222	rs849134	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	7p15.1	JAZF1	rs849134-A	NR	3E-12		0.0196427	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
800	chr7	28196221	28196222	rs849134	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	7p15.1	JAZF1	rs849134-A	NR	6E-14		0.0211392	[0.016-0.027] unit increase	Affymetrix [319769] (imputed)	N
800	chr7	28196221	28196222	rs849134	27189021	Cook JP	2016-05-18	Eur J Hum Genet	Multi-ethnic genome-wide association study identifies novel locus for type 2 diabetes susceptibility.	Type 2 diabetes	746 African American cases, 2,825 African American controls, 743 East Asian ancestry cases, 3,992 East Asian ancestry controls, 7,111 European ancestry cases, 49,688 European ancestry controls, 1,147 Latino cases, 5,352 Latino controls	12,171 European ancestry cases, 56,862 European ancestry controls	7p15.1	JAZF1	rs849134-A	0.531	6E-13		1.12	[1.09-1.16]	NR [at least 8497425] (imputed)	N
800	chr7	28196221	28196222	rs849134	20581827	Voight BF	2010-06-27	Nat Genet	Twelve type 2 diabetes susceptibility loci identified through large-scale association analysis.	Type 2 diabetes	8,130 European ancestry cases, 38,987 European ancestry controls	Up to 34,412 European ancestry cases, 59,925 European ancestry controls	7p15.1	JAZF1	rs849134-A		3E-9		1.13	[1.09-1.18]	Affymetrix, Illumina [2426886] (imputed)	N
800	chr7	28196412	28196413	rs849135	33385400	Patrick MT	2020-12-29	J Invest Dermatol	Causal relationship and shared genetic loci between psoriasis and type 2 diabetes through trans-disease meta-analysis.	Psoriasis or type 2 diabetes (trans-disease meta-analysis)	11,024 European ancestry psoriasis cases, 74,124 European ancestry diabetes cases, 840,342 European ancestry controls	NA	7p15.1	NR	rs849135-G	NR	5E-10		1.06	NR	NR [8016731] (imputed)	N
800	chr7	28196412	28196413	rs849135	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	7p15.1	JAZF1	rs849135-G	0.49903	3E-9		0.013177635	[0.0088-0.0175] unit decrease	Affymetrix [93095623] (imputed)	N
800	chr7	28196412	28196413	rs849135	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	7p15.1	JAZF1	rs849135-G	0.500947820257996	1E-43		0.0999	[0.086-0.114] unit increase	NR [5035015] (imputed)	N
800	chr7	28196412	28196413	rs849135	26961502	Wood AR	2016-03-10	Diabetologia	Variants in the FTO and CDKAL1 loci have recessive effects on risk of obesity and type 2 diabetes, respectively.	Type 2 diabetes	4,040 British ancestry cases, 113,735 British ancestry controls	NA	7p15.1	JAZF1	rs849135-G	NR	3E-6	(additive model)	1.113	[1.07-1.16]	NR [9288881] (imputed)	N
800	chr7	28196412	28196413	rs849135	24509480	Mahajan A	2014-02-09	Nat Genet	Genome-wide trans-ancestry meta-analysis provides insight into the genetic architecture of type 2 diabetes susceptibility.	Type 2 diabetes	12,171 European ancestry cases, 56,862 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls	21,491 European ancestry cases, 55,647 European ancestry controls	7p15.1	JAZF1	rs849135-G	0.52	2E-9		1.12	[1.08-1.17]	Affymetrix, Illumina [2500000] (imputed)	N
800	chr7	28196412	28196413	rs849135	22885922	Morris AP	2012-09-01	Nat Genet	Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes.	Type 2 diabetes	6,377 European ancestry male cases, 5,794 European ancestry female cases, 22,243 European ancestry male controls, 34,619 European ancestry female controls	12,938 European ancestry male cases, 8,553 European ancestry female cases, 904 Pakistani ancestry male cases, 274 Pakistani ancestry female cases, 30,273 European ancestry male controls, 25,374 European ancestry female controls, 2,088 Pakistani ancestry male controls, 384 Pakistani ancestry female controls	7p15.1	JAZF1	rs849135-G	NR	3E-13	(men)	1.11	[1.08-1.15]	Affymetrix, Illumina [up to 2500000] (imputed)	N
800	chr7	28196412	28196413	rs849135	22885922	Morris AP	2012-09-01	Nat Genet	Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes.	Type 2 diabetes	6,377 European ancestry male cases, 5,794 European ancestry female cases, 22,243 European ancestry male controls, 34,619 European ancestry female controls	12,938 European ancestry male cases, 8,553 European ancestry female cases, 904 Pakistani ancestry male cases, 274 Pakistani ancestry female cases, 30,273 European ancestry male controls, 25,374 European ancestry female controls, 2,088 Pakistani ancestry male controls, 384 Pakistani ancestry female controls	7p15.1	JAZF1	rs849135-G	NR	2E-8	(female)	1.1	[1.06-1.13]	Affymetrix, Illumina [up to 2500000] (imputed)	N
800	chr7	28196412	28196413	rs849135	22885922	Morris AP	2012-09-01	Nat Genet	Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes.	Type 2 diabetes	6,377 European ancestry male cases, 5,794 European ancestry female cases, 22,243 European ancestry male controls, 34,619 European ancestry female controls	12,938 European ancestry male cases, 8,553 European ancestry female cases, 904 Pakistani ancestry male cases, 274 Pakistani ancestry female cases, 30,273 European ancestry male controls, 25,374 European ancestry female controls, 2,088 Pakistani ancestry male controls, 384 Pakistani ancestry female controls	7p15.1	JAZF1	rs849135-G	0.516793139712259	3E-17		1.11	[1.08-1.13]	Affymetrix, Illumina [up to 2500000] (imputed)	N
800	chr7	28198676	28198677	rs1708302	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	7p15.1		rs1708302-T	NR	1E-30		0.0265	[0.022-0.031] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
800	chr7	28198676	28198677	rs1708302	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	7p15.1	NR	rs1708302-T	0.501833	3E-9		0.0182046	[0.012-0.024] unit increase	Affymetrix [16577313] (imputed)	N
800	chr7	28198676	28198677	rs1708302	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	7p15.1	JAZF1	rs1708302-C	0.5124	1E-48		1.1	[1.08-1.11]	Affymetrix, Illumina [~ 27000000] (imputed)	N
800	chr7	28198676	28198677	rs1708302	29358691	Bonas-Guarch S	2018-01-22	Nat Commun	Re-analysis of public genetic data reveals a rare X-chromosomal variant associated with type 2 diabetes.	Type 2 diabetes	up to 12,931 European ancestry cases, up to 57,196 European ancestry controls	NA	7p15.1	JAZF1	rs1708302-C	NR	3E-19		1.1503888		Affymetrix, Illumina [~ 13000000] (imputed)	N
800	chr7	28200096	28200097	rs1513272	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	7p15.1	JAZF1	rs1513272-C	NR	2E-21		0.026955	[0.021-0.033] unit increase	Affymetrix [321114] (imputed)	N
800	chr7	28200096	28200097	rs1513272	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	7p15.1	JAZF1	rs1513272-C	NR	1E-11		0.0193327	[0.014-0.025] unit increase	Affymetrix [321169] (imputed)	N
800	chr7	28200096	28200097	rs1513272	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	7p15.1	NR	rs1513272-C	0.5087	4E-71		0.0811	[0.072-0.09] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
800	chr7	28200096	28200097	rs1513272	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	7p15.1	JAZF1	rs1513272-T	0.4996	3E-16		0.0206	[0.016-0.026] unit increase	Affymetrix [19819130] (imputed)	N
800	chr7	28200096	28200097	rs1513272	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	7p15.1	JAZF1	rs1513272-T	0.4996	2E-15		0.0185	[0.014-0.023] unit increase	Affymetrix [19819130] (imputed)	N
800	chr7	28200096	28200097	rs1513272	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	7p15.1	JAZF1	rs1513272-T	0.4996	1E-17		0.0198	[0.015-0.024] unit increase	Affymetrix [19819130] (imputed)	N
800	chr7	28200096	28200097	rs1513272	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	7p15.1		rs1513272-?	NR	6E-23				NR [~ 8900000] (imputed)	N
800	chr7	28200096	28200097	rs1513272	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	7p15.1		rs1513272-?	NR	2E-22				NR [~ 8900000] (imputed)	N
800	chr7	28200323	28200324	rs73091214	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	7p15.1	JAZF1	rs73091214-C	NR	2E-8		0.0281186	[0.018-0.038] unit increase	Affymetrix [323123] (imputed)	N
800	chr7	28200323	28200324	rs73091214	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	7p15.1	JAZF1	rs73091214-T	0.8982	1E-9		0.0654	[0.044-0.087] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
800	chr7	28202078	28202079	rs506154	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	7p15.1		rs506154-C	NR	3E-100		0.0379	[0.034-0.041] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
800	chr7	28202078	28202079	rs506154	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	7p15.1	JAZF1	rs506154-T	NR	1E-15		0.024712	[0.019-0.031] unit increase	Affymetrix [321016] (imputed)	N
800	chr7	28205137	28205138	rs73091220	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	7p15.1	JAZF1	rs73091220-G	NR	8E-15		0.033429	[0.025-0.042] unit increase	Affymetrix [321114] (imputed)	N
800	chr7	28205302	28205303	rs552707	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	7p15.1	JAZF1	rs552707-T	NR	4E-26		0.0357257	[0.029-0.042] unit increase	Affymetrix [321114] (imputed)	N
800	chr7	28205302	28205303	rs552707	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	7p15.1	JAZF1	rs552707-T	0.2923	9E-9	(women)	0.0344	[0.023-0.046] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
800	chr7	28205302	28205303	rs552707	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	7p15.1	JAZF1	rs552707-T	0.2923	6E-8	(men)	0.0314	[0.02-0.043] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
800	chr7	28205302	28205303	rs552707	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	7p15.1	JAZF1	rs552707-T	0.2936	8E-8	(men)	0.0356	[0.023-0.049] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
800	chr7	28205302	28205303	rs552707	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	7p15.1	JAZF1	rs552707-T	0.2927	8E-8	(women)	0.0364	[0.023-0.05] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
800	chr7	28205302	28205303	rs552707	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	7p15.1	JAZF1	rs552707-?	0.2923	5E-8	(women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
800	chr7	28205302	28205303	rs552707	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	7p15.1	JAZF1	rs552707-?	0.2923	1E-7	(men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
800	chr7	28205302	28205303	rs552707	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	7p15.1	JAZF1	rs552707-T	0.305	9E-46		0.046	[0.04-0.052] unit increase	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
800	chr7	28207299	28207300	rs481806	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	7p15.1	JAZF1	rs481806-G	0.287216	2E-27	(females)	0.03942	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
800	chr7	28207299	28207300	rs481806	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	7p15.1	JAZF1	rs481806-G	0.287216	2E-22		0.02606	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
800	chr7	28207299	28207300	rs481806	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	7p15.1	JAZF1	rs481806-G	0.287216	2E-16	(females)	0.02957	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
800	chr7	28207299	28207300	rs481806	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	7p15.1	JAZF1	rs481806-G	0.287216	2E-13		0.02035	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
800	chr7	28207299	28207300	rs481806	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	7p15.1	JAZF1	rs481806-G	0.287216	9E-11		0.01572	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
800	chr7	28207299	28207300	rs481806	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	7p15.1	JAZF1	rs481806-G	0.287216	6E-11	(males)	0.004316	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
800	chr7	28207299	28207300	rs481806	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	7p15.1	JAZF1	rs481806-G	0.287216	2E-11	(females)	0.02528	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
800	chr7	28207299	28207300	rs481806	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	7p15.1	JAZF1	rs481806-G	0.2964	4E-9	(EA, men)	0.0359	[0.024-0.048] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
800	chr7	28207299	28207300	rs481806	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	7p15.1	JAZF1	rs481806-G	0.2974	1E-8	(EA, men)	0.0384	[0.025-0.052] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
800	chr7	28207299	28207300	rs481806	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	7p15.1	JAZF1	rs481806-?	0.2964	1E-8	(EA, men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
800	chr7	28207783	28207784	rs150231034	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	7p15.1	JAZF1	rs150231034-A	NR	3E-14		0.0298829	[0.022-0.038] unit increase	Affymetrix [321016] (imputed)	N
800	chr7	28209953	28209955	rs201414626	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	7p15.1	NR	rs201414626-G	NR	4E-9		0.0147	[0.0098-0.0196] unit decrease	Affymetrix [9000000] (imputed)	N
800	chr7	28210659	28210660	rs520161	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	7p15.1	JAZF1	rs520161-T	NR	2E-16		0.0254752	[0.019-0.032] unit increase	Affymetrix [321114] (imputed)	N
800	chr7	28210659	28210660	rs520161	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	7p15.1	NR	rs520161-C	NR	5E-14		0.02	[0.015-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
800	chr7	28212823	28212824	rs508347	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7p15.1		rs508347-?	NR	2E-161				NR [~ 8900000] (imputed)	N
800	chr7	28212823	28212824	rs508347	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	7p15.1	NR	rs508347-?	NR	8E-12		0.16518	[0.12-0.21] unit decrease	Affymetrix [7794483] (imputed)	N
800	chr7	28212823	28212824	rs508347	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	7p15.1	NR	rs508347-?	NR	2E-10	(male)	0.2414	[0.17-0.32] unit decrease	Affymetrix [7794483] (imputed)	N
800	chr7	28215360	28215361	rs3735569	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	133,471 East Asian ancestry individuals	NA	7p15.1		rs3735569-C	0.487943	3E-9		0.0208113	[0.014-0.028] unit increase	Illumina [13476165] (imputed)	N
800	chr7	28216195	28216196	rs515013	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	7p15.1	JAZF1	rs515013-C	NR	3E-10		0.0255597	[0.018-0.033] unit increase	Affymetrix [321114] (imputed)	N
800	chr7	28219309	28219310	rs3735567	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	7p15.1	JAZF1	rs3735567-G	0.778	3E-12		1.06	[1.04-1.08]	Affymetrix, Illumina [11800000] (imputed)	N
800	chr7	28219811	28219812	rs849333	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	7p15.1	JAZF1	rs849333-A	NR	3E-12		0.0208072	[0.015-0.027] unit increase	Affymetrix [319769] (imputed)	N
800	chr7	28219811	28219812	rs849333	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	7p15.1	JAZF1	rs849333-A	NR	5E-10		0.0186474	[0.013-0.025] unit increase	Affymetrix [321169] (imputed)	N
800	chr7	28224052	28224053	rs849336	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large HDL	115,082 European ancestry individuals	NA	7p15.1		rs849336-A	0.344582	7E-11		0.0254888	[0.018-0.033] unit decrease	NR [11722792] (imputed)	N
800	chr7	28224052	28224053	rs849336	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	7p15.1		rs849336-A	0.344582	3E-8		0.0211864	[0.014-0.029] unit decrease	NR [11722792] (imputed)	N
800	chr7	28224052	28224053	rs849336	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large HDL	115,082 European ancestry individuals	NA	7p15.1		rs849336-A	0.344582	7E-11		0.0255017	[0.018-0.033] unit decrease	NR [11722792] (imputed)	N
800	chr7	28224052	28224053	rs849336	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	7p15.1		rs849336-A	0.344569	3E-9		0.0227618	[0.015-0.03] unit increase	NR [11722792] (imputed)	N
800	chr7	28224052	28224053	rs849336	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	7p15.1		rs849336-A	0.344582	3E-9		0.0245103	[0.016-0.033] unit decrease	NR [11722792] (imputed)	N
800	chr7	28224052	28224053	rs849336	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	7p15.1		rs849336-A	0.344582	2E-9		0.0244247	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
800	chr7	28224052	28224053	rs849336	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	7p15.1		rs849336-A	0.344582	5E-9		0.0222535	[0.015-0.03] unit decrease	NR [11722792] (imputed)	N
800	chr7	28224052	28224053	rs849336	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large HDL particles	115,082 European ancestry individuals	NA	7p15.1		rs849336-A	0.344582	3E-10		0.0246984	[0.017-0.032] unit decrease	NR [11722792] (imputed)	N
800	chr7	28224052	28224053	rs849336	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	7p15.1		rs849336-A	0.344582	1E-8		0.021786	[0.014-0.029] unit decrease	NR [11722792] (imputed)	N
800	chr7	28224052	28224053	rs849336	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	7p15.1		rs849336-A	0.344582	1E-10		0.0251723	[0.018-0.033] unit decrease	NR [11722792] (imputed)	N
800	chr7	28224052	28224053	rs849336	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	7p15.1		rs849336-A	0.344582	1E-8		0.0219257	[0.014-0.029] unit decrease	NR [11722792] (imputed)	N
800	chr7	28224052	28224053	rs849336	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	7p15.1		rs849336-A	0.344582	1E-10		0.0251809	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
800	chr7	28224052	28224053	rs849336	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	7p15.1		rs849336-A	0.344582	8E-9		0.022057	[0.015-0.03] unit decrease	NR [11722792] (imputed)	N
800	chr7	28224052	28224053	rs849336	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	7p15.1		rs849336-A	0.344582	1E-8		0.0219394	[0.014-0.029] unit decrease	NR [11722792] (imputed)	N
800	chr7	28225513	28225514	rs565317	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	7p15.1	JAZF1-AS1	rs565317-T	NR	5E-9		0.0257686	[0.017-0.034] unit increase	Affymetrix [321114] (imputed)	N
800	chr7	28229041	28229042	rs550448	21980299	Bradfield JP	2011-09-29	PLoS Genet	A genome-wide meta-analysis of six type 1 diabetes cohorts identifies multiple associated loci.	Type 1 diabetes	9,934 European ancestry cases, 16,956 European ancestry controls	1,120 European ancestry affected trios	7p15.1	LOC100128081	rs550448-?	0.86	5E-7		1.32	[NR]	Affymetrix, Illumina [~ 2540000] (imputed)	N
800	chr7	28232456	28232457	rs849327	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	7p15.1		rs849327-A	0.344126	7E-9		0.0244085	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
800	chr7	28232456	28232457	rs849327	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	7p15.1		rs849327-A	0.343989	1E-8		0.0235145	[0.015-0.032] unit decrease	NR [11722792] (imputed)	N
800	chr7	28232456	28232457	rs849327	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	7p15.1		rs849327-A	0.344126	3E-8		0.0231387	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
800	chr7	28232456	28232457	rs849327	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for VLDL particles	115,082 European ancestry individuals	NA	7p15.1		rs849327-A	0.343989	2E-8		0.0228273	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
800	chr7	28232456	28232457	rs849327	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	7p15.1	JAZF1-AS1	rs849327-A	NR	5E-13		0.0214692	[0.016-0.027] unit increase	Affymetrix [319769] (imputed)	N
800	chr7	28232456	28232457	rs849327	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	7p15.1	JAZF1-AS1	rs849327-A	NR	2E-10		0.0192066	[0.013-0.025] unit increase	Affymetrix [321114] (imputed)	N
800	chr7	28232456	28232457	rs849327	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	7p15.1		rs849327-?	NR	1E-9				NR [~ 8900000] (imputed)	N
800	chr7	28234306	28234307	rs55775039	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		JAZF1-AS1	rs55775039-?	NR	6E-13	(female)	0.684911	[NR] unit increase	Affymetrix [NR] (imputed)	N
800	chr7	28245294	28245295	rs7801967	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	7p15.1		rs7801967-C	0.909423	2E-9		0.0396785	[0.027-0.053] unit increase	NR [11722792] (imputed)	N
800	chr7	28253369	28253370	rs113568287	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	7p15.1	NR	rs113568287-?	NR	1E-10				Affymetrix [~ 8270000] (imputed)	N
800	chr7	28256239	28256240	rs498475	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	7p15.1		rs498475-G	0.369238	1E-8		0.0231486	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
800	chr7	28256239	28256240	rs498475	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	7p15.1		rs498475-G	0.369385	2E-11		0.0280485	[0.02-0.036] unit decrease	NR [11722792] (imputed)	N
800	chr7	28256239	28256240	rs498475	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	7p15.1		rs498475-G	0.369238	3E-8		0.0223564	[0.014-0.03] unit decrease	NR [11722792] (imputed)	N
800	chr7	28256239	28256240	rs498475	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	7p15.1		rs498475-G	0.369243	4E-10		0.025688	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
800	chr7	28256239	28256240	rs498475	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	7p15.1		rs498475-G	0.369238	2E-8		0.0228743	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
800	chr7	28256239	28256240	rs498475	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	7p15.1	JAZF1	rs498475-G	0.367612	2E-8		0.0116865	[0.0076-0.0157] unit increase	Affymetrix [NR] (imputed)	N
800	chr7	28256239	28256240	rs498475	30642921	de Vries PS	2019-01-14	Blood	A genome-wide association study identifies new loci for factor VII and implicates factor VII in ischemic stroke etiology.	Factor VII activity	20,014 European ancestry individuals, 3,420 African American individuals	NA	7p15.1	JAZF1-AS1	rs498475-G	0.42	2E-8		0.012	[0.0081-0.0159] unit increase	Affymetrix, Illumina [10044948] (imputed)	N
800	chr7	28257320	28257321	rs78630959	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	7p15.1		rs78630959-G	NR	2E-8		0.0225	[0.015-0.03] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
800	chr7	28257320	28257321	rs78630959	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	153,015 East Asian ancestry individuals	NA	7p15.1		rs78630959-G	0.192624	2E-8		0.0225219	[0.015-0.03] unit increase	Illumina [13478961] (imputed)	N
800	chr7	28271689	28271690	rs73302615	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	7p15.1	intergenic	rs73302615-A	0.002	2E-6		15.23	[3.38-68.72]	Illumina [1556551]	N
800	chr7	28277106	28277107	rs2158799	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	7p15.1	JAZF1-AS1	rs2158799-G	0.609705	2E-78		0.04261641	[0.038-0.047] unit increase	Affymetrix [93095623] (imputed)	N
800	chr7	28277106	28277107	rs2158799	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	7p15.1	JAZF1-AS1	rs2158799-G	0.609734	3E-73		0.04147363	[0.037-0.046] unit increase	Affymetrix [93095623] (imputed)	N
800	chr7	28277106	28277107	rs2158799	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	7p15.1	JAZF1-AS1	rs2158799-G	0.609769	2E-115		0.051955804	[0.047-0.056] unit increase	Affymetrix [93095623] (imputed)	N
800	chr7	28277106	28277107	rs2158799	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	7p15.1	JAZF1-AS1	rs2158799-G	0.609739	8E-57		0.036374826	[0.032-0.041] unit decrease	Affymetrix [93095623] (imputed)	N
800	chr7	28277106	28277107	rs2158799	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	7p15.1	JAZF1-AS1	rs2158799-G	0.609706	3E-19		0.020378212	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
800	chr7	28277106	28277107	rs2158799	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	7p15.1	JAZF1-AS1	rs2158799-G	0.609756	2E-11		0.0153034	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
800	chr7	28277106	28277107	rs2158799	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	7p15.1		rs2158799-?	NR	9E-78				NR [~ 8900000] (imputed)	N
800	chr7	28277106	28277107	rs2158799	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	7p15.1	JAZF1-AS1	rs2158799-G	0.6083	1E-36		0.04696323	[0.04-0.054] unit increase	Affymetrix [~ 2500000] (imputed)	N
800	chr7	28277106	28277107	rs2158799	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	7p15.1	JAZF1-AS1	rs2158799-G	0.6082	3E-49		0.05471958	[0.047-0.062] unit increase	Affymetrix [~ 2500000] (imputed)	N
800	chr7	28277106	28277107	rs2158799	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	7p15.1	JAZF1-AS1	rs2158799-G	0.6083	1E-51		0.05615712	[0.049-0.063] unit increase	Affymetrix [~ 2500000] (imputed)	N
800	chr7	28277106	28277107	rs2158799	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	7p15.1	JAZF1-AS1	rs2158799-G	0.6082	1E-34		0.04525739	[0.038-0.052] unit increase	Affymetrix [~ 2500000] (imputed)	N
800	chr7	28277106	28277107	rs2158799	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	7p15.1	JAZF1-AS1	rs2158799-G	0.6083	1E-13		0.02746603	[0.02-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
800	chr7	28277106	28277107	rs2158799	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	7p15.1	JAZF1-AS1	rs2158799-G	0.6083	6E-52		0.05619953	[0.049-0.063] unit increase	Affymetrix [~ 2500000] (imputed)	N
800	chr7	28277106	28277107	rs2158799	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	7p15.1	JAZF1-AS1	rs2158799-G	0.6082	2E-48		0.05450642	[0.047-0.062] unit increase	Affymetrix [~ 2500000] (imputed)	N
800	chr7	28277106	28277107	rs2158799	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	7p15.1	JAZF1-AS1	rs2158799-G	0.6083	4E-29		0.04124948	[0.034-0.048] unit decrease	Affymetrix [~ 2500000] (imputed)	N
800	chr7	28277106	28277107	rs2158799	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	7p15.1	JAZF1-AS1	rs2158799-G	0.6081	3E-15		0.0292199	[0.022-0.036] unit increase	Affymetrix [~ 2500000] (imputed)	N
800	chr7	28277106	28277107	rs2158799	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	7p15.1	JAZF1-AS1	rs2158799-G	0.6082	6E-49		0.05460752	[0.047-0.062] unit increase	Affymetrix [~ 2500000] (imputed)	N
800	chr7	28277106	28277107	rs2158799	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	7p15.1	JAZF1-AS1	rs2158799-G	0.6083	3E-12		0.02585486	[0.019-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
800	chr7	28277809	28277810	rs544632	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	7p15.1		rs544632-C	0.651	1E-20				Affymetrix [10369434] (imputed)	N
800	chr7	28279242	28279243	rs4722771	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	7p15.1		rs4722771-G	0.559	1E-37				Affymetrix [10369434] (imputed)	N
800	chr7	28279242	28279243	rs4722771	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	7p15.1		rs4722771-G	0.559	1E-8				Affymetrix [10369434] (imputed)	N
800	chr7	28279242	28279243	rs4722771	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	7p15.1		rs4722771-G	0.559	2E-12				Affymetrix [10369434] (imputed)	N
800	chr7	28285902	28285903	rs4722772	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	7p15.1	JAZF1-AS1	rs4722772-C	0.242406	1E-15		0.020811578	[0.016-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
800	chr7	28287286	28287287	rs13243882	30954325	Kamboh MI	2019-03-11	Neurobiol Aging	Population-based genome-wide association study of cognitive decline in older adults free of dementia: identification of a novel locus for the attention domain.	Age-related cognitive decline (memory) (slope of z-scores)	1,145 European ancestry individuals	NA	7p15.1	JAZF1-AS1, CREB5	rs13243882-T	0.53	6E-6		0.18	unit increase	Illumina [5600000] (imputed)	N
800	chr7	28287286	28287287	rs13243882	30954325	Kamboh MI	2019-03-11	Neurobiol Aging	Population-based genome-wide association study of cognitive decline in older adults free of dementia: identification of a novel locus for the attention domain.	Age-related cognitive decline (global cognition) (slope of z-scores)	1,145 European ancestry individuals	NA	7p15.1	JAZF1-AS1, CREB5	rs13243882-T	0.53	3E-6				Illumina [5600000] (imputed)	N
800	chr7	28290651	28290652	rs9648027	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	7p15.1	NR	rs9648027-T	0.438607	1E-10		0.011828	[0.0082-0.0154] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
800	chr7	28294240	28294241	rs62449592	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	7p15.1		rs62449592-G	0.184905	2E-15		0.022931421	[0.017-0.029] unit increase	Affymetrix [93095623] (imputed)	N
800	chr7	28307304	28307305	rs35110517	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	7p15.1	intergenic	rs35110517-G	0.1853	1E-10		0.03026428	[0.021-0.039] unit increase	Affymetrix [~ 2500000] (imputed)	N
801	chr7	28322675	28322676	rs177489	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	7p15.1		rs177489-A	0.33	2E-8		5.66	z score increase	Affymetrix [9061022] (imputed)	N
801	chr7	28356888	28356889	rs17156577	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	7p15.1		rs17156577-T	NR	2E-8		0.95	[0.93-0.97]	Affymetrix, Illumina [NR] (imputed)	N
801	chr7	28356888	28356889	rs17156577	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	7p15.1	CREB5	rs17156577-C	0.11	4E-9	(EA)	1.05	[1.02-1.08] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
801	chr7	28391046	28391047	rs11772815	26105758	Adhikari K	2015-06-24	Nat Commun	A genome-wide association study identifies multiple loci for variation in human ear morphology.	Folding of antihelix	4,919 Latin American individuals	NA	7p15.1	NR	rs11772815-?	NR	8E-7	(FDR adjusted)			Illumina [671038]	N
801	chr7	28391141	28391142	rs11765845	21441570	Grassi MA	2011-03-26	Hum Mol Genet	Genome-wide meta-analysis for severe diabetic retinopathy.	Diabetic retinopathy	973 European ancestry cases, 1,856 European ancestry controls	NA	7p15.1	CREB5, tcag7.873, LOC401317	rs11765845-A	0.29	7E-6		1.02	[NR]	Affymetrix, Illumina [2543887] (imputed)	N
801	chr7	28393402	28393403	rs7805378	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (multi-trait analysis)	90,939 European ancestry individuals	NA	7p15.1	CREB5	rs7805378-A	0.56	2E-11		0.0058	NR unit increase	Affymetrix, Illumina [8002429] (imputed)	N
801	chr7	28393402	28393403	rs7805378	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (adjusted for vertical disc diameter)	67,040 British ancestry individuals	NA	7p15.1	CREB5	rs7805378-A	0.56	3E-9		0.00548	[0.0037-0.0073] unit increase	Affymetrix [at least 8002429] (imputed)	N
801	chr7	28409531	28409532	rs12700888	32386560	Ramirez J	2020-04-29	Am J Hum Genet	Common Genetic Variants Modulate the Electrocardiographic Tpeak-to-Tend Interval.	TPE interval (resting)	71,338 European ancestry individuals	NA	7p15.1	CREB5	rs12700888-A	0.262	6E-13		0.042	[0.03-0.054] unit increase	Affymetrix [~ 9000000] (imputed)	N
801	chr7	28413186	28413187	rs6462078	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	7p15.1	CREB5	rs6462078-A	0.75	3E-11	(EA)	1.06	[1.04-1.08]	Affymetrix, Illumina [up to 12149979] (imputed)	N
801	chr7	28413186	28413187	rs6462078	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	7p15.1	CREB5	rs6462078-A	0.75	1E-11		1.06	[1.04-1.08]	Affymetrix, Illumina [up to 12149979] (imputed)	N
801	chr7	28415826	28415827	rs6462079	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	7p15.1	CREB5	rs6462079-A	0.721	9E-10		1.05	[1.03-1.06]	Illumina [34740186] (imputed)	N
801	chr7	28422133	28422134	rs887623	33491795	Timmer T	2021-01-25	Vox Sang	Genetic determinants of ferritin, haemoglobin levels and haemoglobin trajectories: results from Donor InSight.	Ferritin levels	2,649 European ancestry individuals	NA	7p15.1	CREB5	rs887623-C	0.194	6E-7		0.14	[0.19-0.08] unit decrease	Affymetrix [7435577] (imputed)	N
801	chr7	28429242	28429243	rs42694	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs ADHD (ordinary least squares (OLS))	40,675 schizophrenia cases, 19,099 ADHD cases	NA	7p15.1		rs42694-?	NR	8E-9		0.0198	NR unit increase	NR [4428082] (imputed)	N
801	chr7	28432475	28432476	rs7799265	22837378	Wilk JB	2012-07-26	Am J Respir Crit Care Med	Genome-wide association studies identify CHRNA5/3 and HTR4 in the development of airflow obstruction.	Airflow obstruction	up to 3,368 European ancestry cases, up to 29,507 European ancestry controls	331 European ancestry cases, 2,550 European ancestry controls	7p15.1	CREB5	rs7799265-?	0.05	2E-6	(FEV1 65%)	1.5385	[NR]	Affymetrix, Illumina [up to 2500000] (imputed)	N
802	chr7	28455232	28455233	rs42714	22959728	Ahmeti KB	2012-09-05	Neurobiol Aging	Age of onset of amyotrophic lateral sclerosis is modulated by a locus on 1p34.1.	Amyotrophic lateral sclerosis in C9orf72 mutation negative individuals	Up to 4,243 European ancestry cases, up to 5,112 European ancestry controls	NA	7p15.1	CREB5	rs42714-?	NR	2E-6		1.6393442	[1.33-2]	Illumina [254145]	N
802	chr7	28470793	28470794	rs6943506	32439431	Simard M	2020-05-19	J Allergy Clin Immunol	Polygenic risk score for atopic dermatitis in the Canadian population.	Atopic dermatitis (moderate to severe)	222 South East Asian ancestry, East Asian ancestry, South Asian ancestry, African American or Afro-Caribbean, European ancestry, Greater Middle Eastern (Middle Eastern, North African or Persian) cases, 2,466 Greater Middle Eastern (Middle Eastern, North African or Persian), Hispanic or Latin American, NR moderate to severe atopic dermatitis cases, 2,466 South East Asian ancestry, East Asian ancestry, South Asian ancestry, African American or Afro-Caribbean, European ancestry, Greater Middle Eastern (Middle Eastern, North African or Persian) cases, 2,466 Greater Middle Eastern (Middle Eastern, North African or Persian), Hispanic or Latin American, NR controls without moderate to severe atopic dermatitis	NA	7p15.1		rs6943506-G	NR	2E-9	(general)			Illumina [5894709] (imputed)	N
802	chr7	28475254	28475255	rs79835348	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	7p15.1	intergenic	rs79835348-C	0.007	2E-6		7.39	[2.82-19.36]	Illumina [1556551]	N
802	chr7	28478624	28478625	rs7790864	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs bipolar disorder (ordinary least squares (OLS))	40,675 schizophrenia cases, 20,352 bipolar disorder cases	NA	7p15.1		rs7790864-?	NR	2E-8		0.0132	NR unit increase	NR [4548414] (imputed)	N
802	chr7	28478624	28478625	rs7790864	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs anorexia nervosa (ordinary least squares (OLS))	40,675 schizophrenia cases, 16,992 anorexia nervosa cases	NA	7p15.1		rs7790864-?	NR	4E-8		0.0182	NR unit increase	NR [4425810] (imputed)	N
802	chr7	28495807	28495808	rs73075851	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7p15.1	NR	rs73075851-G	0.01045	7E-9	(PHYH)	0.03933	NR unit increase	Illumina [1671387] (imputed)	N
802	chr7	28530518	28530518	rs5883138	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	7p15.1		rs5883138-CT	0.36934	5E-6		0.032245	[0.018-0.046] unit decrease	Affymetrix [15580782] (imputed)	N
802	chr7	28545809	28545810	rs217514	31219150	Ekenberg C	2019-06-13	J Infect Dis	Single nucleotide polymorphisms in HLA alleles are associated with HIV-1 viral load in demographically diverse, ART-naive participants from the START trial.	Pre-treatment viral load in HIV-1 infection	1,398 European ancestry individuals, 572 Black individuals, 418 Hispanic individuals, 13 Asian ancestry individuals, 39 individuals	NA	7p15.1	CREB5	rs217514-C	0.257	5E-16		0.22	[0.17-0.27] unit increase	Affymetrix [339439]	N
802	chr7	28547606	28547607	rs10258092	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	28,092 non-Hispanic White ancestry cases, 50,487 non-Hispanic White ancestry controls, 2,233 East Asian ancestry cases, 7,023 East Asian ancestry controls, 2,149 Hispanic/Latino cases, 6,620 Hispanic/Latino controls, 815 African American cases, 2,368 African American controls, 31,852 European ancestry cases, 428,084 European ancestry controls, 757 African ancestry cases, 7,897 African ancestry controls, 1,278 South Asian ancestry cases, 8,571 South Asian ancestry controls, 668 other admixed cases, 7,349 other admixed controls	313,278 European ancestry cases, 2,210,509 European ancestry controls, 7,715 African American cases, 120,390 African American controls, 3,934 East Asian ancestry cases, 104,766 East Asian ancestry controls, 21,408 Latino cases, 425,544 Latino controls, 874 South Asian ancestry cases, 26,037 South Asian ancestry controls		CREB5	rs10258092-C	NR	2E-8		1.03	[1.02-1.04]	Affymetrix [9869154] (imputed)	N
802	chr7	28553806	28553807	rs216706	34437536	Akhtari FS	2021-08-26	PLoS Genet	High-throughput screening and genome-wide analyses of 44 anticancer drugs in the 1000 Genomes cell lines reveals an association of the NQO1 gene with the response of multiple anticancer drugs.	Response to cytidine analogues (gemcitabine)	680 lymphoblastoid cell lines from Han Chinese ancestry, Japanese ancestry, Kenyan ancestry, Mexican ancestry, Tuscan ancestry, Yoruban ancestry, British ancestry, Columbian ancestry individuals	NA	7p15.1		rs216706-?	NR	5E-7				Illumina [1510701]	N
802	chr7	28555834	28555835	rs216707	31324189	Kim W	2019-07-19	Respir Res	DSP variants may be associated with longitudinal change in quantitative emphysema.	Emphysema annual change measurement in smokers (percent low attenuation area)	4,427 European ancestry individuals, 1,158 African American individuals	NA	7p15.1	CREB5	rs216707-T	NR	9E-6		0.088	[0.049-0.127] unit increase	Illumina [NR] (imputed)	N
802	chr7	28559784	28559785	rs177592	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	7p15.1	CREB5	rs177592-C	0.1013	7E-13		0.0221	[0.016-0.028] unit decrease	Affymetrix [18391927] (imputed)	N
803	chr7	28587816	28587817	rs160335	31417091	Kou I	2019-08-15	Nat Commun	Genome-wide association study identifies 14 previously unreported susceptibility loci for adolescent idiopathic scoliosis in Japanese.	Adolescent idiopathic scoliosis	5,327 Japanese ancestry cases, 73,884 Japanese ancestry controls	NA	7p15.1	CREB5	rs160335-G	0.51	9E-9		1.13	[1.08-1.18]	Illumina [9332516] (imputed)	N
803	chr7	28609387	28609388	rs71539572	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	7p15.1	CREB5	rs71539572-C	0.772259	9E-20		0.0198235	[0.016-0.024] unit decrease	NR [13737936] (imputed)	N
803	chr7	28609387	28609388	rs71539572	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	7p15.1		rs71539572-?	NR	9E-20				NR [~ 8900000] (imputed)	N
803	chr7	28609387	28609388	rs71539572	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	7p15.1		rs71539572-?	NR	5E-20		0.0220222	[0.017-0.027] unit decrease	Affymetrix [20259828] (imputed)	N
803	chr7	28611464	28611465	rs160354	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	White blood cell count	107,964 Japanese ancestry individuals	NA	7p15.1	NR	rs160354-?	NR	1E-8		0.05887	[0.039-0.079] unit increase novel	Illumina [6108953] (imputed)	N
803	chr7	28623720	28623721	rs17156878	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	7p15.1		rs17156878-A	NR	6E-11		0.0159	[0.011-0.021] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
803	chr7	28629413	28629414	rs5883154	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	7p15.1	CREB5	rs5883154-AT	0.6681	2E-9		0.1597	[0.11-0.21] mmHg decrease	Affymetrix [NR] (imputed)	N
803	chr7	28658521	28658522	rs917275	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	7p15.1	CREB5	rs917275-A		8E-12		0.182	unit decrease	Affymetrix [at least 2696785] (imputed)	N
803	chr7	28678175	28678176	rs79073424	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	7p15.1	NR	rs79073424-?	NR	2E-8				Illumina [7760689] (imputed)	N
803	chr7	28680451	28680452	rs160366	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	7p15.1	NR	rs160366-?	NR	7E-6		0.1334	[0.076-0.191] unit increase	Illumina [at least 560000] (imputed)	N
804	chr7	28708863	28708864	rs982948	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	7p15.1		rs982948-?	NR	2E-11		0.0139173	[0.0097-0.0181] unit increase	Affymetrix [20259828] (imputed)	N
804	chr7	28715055	28715056	rs16874653	33385171	Hagg S	2020-12-31	Hum Genet	Deciphering the genetic and epidemiological landscape of mitochondrial DNA abundance.	Mitochondrial DNA levels	295,150 European ancestry individuals	NA	7p15.1	NR	rs16874653-G	0.326	4E-8		0.0151318	[0.0097-0.0206] unit decrease	Affymetrix [3505788] (imputed)	N
804	chr7	28717029	28717030	rs57123607	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	White blood cell count	107,964 Japanese ancestry individuals	NA	7p15.1	CREB5	rs57123607-?	NR	2E-17		0.04088	[0.031-0.05] unit increase novel	Illumina [6108953] (imputed)	N
804	chr7	28721137	28721138	rs73684276	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	78,744 East Asian ancestry individuals	NA	7p15.1	NR	rs73684276-C	0.787139	2E-22		0.063136	[0.05-0.076] SD units decrease	Affymetrix, Illumina [16289093] (imputed)	N
804	chr7	28723406	28723407	rs886816	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (neutrophil)	16,201 African American or Afro-Caribbean individuals	NA	7p15.1		rs886816-A	0.6228	5E-9		0.102	[0.068-0.136] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
804	chr7	28723406	28723407	rs886816	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	16,201 African American or Afro-Caribbean individuals	NA	7p15.1		rs886816-A	0.6238	4E-9		0.0711	[0.047-0.095] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
804	chr7	28723406	28723407	rs886816	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Neutrophil count	62,076 Japanese ancestry individuals	NA	7p15.1	CREB5	rs886816-?	NR	8E-20		0.06648	[0.052-0.081] unit increase novel	Illumina [6108953] (imputed)	N
804	chr7	28724373	28724374	rs56388170	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	7p15.1		rs56388170-T	NR	2E-119		0.052	[0.048-0.056] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
804	chr7	28724373	28724374	rs56388170	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	154,355 East Asian ancestry individuals	NA	7p15.1		rs56388170-T	0.214641	1E-26		0.0452724	[0.037-0.054] unit increase	Illumina [13479091] (imputed)	N
804	chr7	28724373	28724374	rs56388170	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	82,810 East Asian ancestry individuals	NA	7p15.1		rs56388170-T	0.212788	2E-25		0.0606896	[0.049-0.072] unit increase	Illumina [13467171] (imputed)	N
804	chr7	28724373	28724374	rs56388170	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	7p15.1		rs56388170-T	NR	4E-161		0.0649	[0.06-0.07] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
804	chr7	28724373	28724374	rs56388170	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	349,856 European ancestry individuals, 91,908 East Asian ancestry individuals	NA	7p15.1		rs56388170-T	NR	1E-10		0.0133	[0.0092-0.0174] unit increase	Affymetrix, Illumina [20529536] (imputed)	N
804	chr7	28724373	28724374	rs56388170	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	7p15.1		rs56388170-G	0.708	1E-41				Affymetrix [10369434] (imputed)	N
804	chr7	28724373	28724374	rs56388170	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	7p15.1		rs56388170-G	0.708	2E-71				Affymetrix [10369434] (imputed)	N
804	chr7	28724373	28724374	rs56388170	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	7p15.1		rs56388170-G	0.708	1E-37				Affymetrix [10369434] (imputed)	N
804	chr7	28724373	28724374	rs56388170	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (neutrophil)	21,347 Hispanic or Latin American individuals	NA	7p15.1		rs56388170-T	0.6682	5E-7		0.0617	[0.038-0.086] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
804	chr7	28724373	28724374	rs56388170	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	7p15.1	CREB5	rs56388170-T	0.292055	6E-135		0.06044047	[0.056-0.065] unit increase	Affymetrix [93095623] (imputed)	N
804	chr7	28724373	28724374	rs56388170	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	7p15.1	CREB5	rs56388170-T	0.291991	8E-112		0.055062953	[0.05-0.06] unit increase	Affymetrix [93095623] (imputed)	N
804	chr7	28724373	28724374	rs56388170	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	7p15.1	CREB5	rs56388170-T	0.292033	2E-186		0.07132672	[0.067-0.076] unit increase	Affymetrix [93095623] (imputed)	N
804	chr7	28724373	28724374	rs56388170	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	7p15.1	CREB5	rs56388170-T	0.291909	2E-38		0.033828072	[0.029-0.039] unit decrease	Affymetrix [93095623] (imputed)	N
804	chr7	28724373	28724374	rs56388170	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	7p15.1	CREB5	rs56388170-T	0.291998	2E-88		0.04884965	[0.044-0.054] unit decrease	Affymetrix [93095623] (imputed)	N
804	chr7	28724373	28724374	rs56388170	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	7p15.1	CREB5	rs56388170-T	0.292037	4E-9		0.014472335	[0.0096-0.0193] unit increase	Affymetrix [93095623] (imputed)	N
804	chr7	28724373	28724374	rs56388170	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	7p15.1	CREB5	rs56388170-T	0.292045	6E-45		0.034604058	[0.03-0.039] unit increase	Affymetrix [93095623] (imputed)	N
804	chr7	28724373	28724374	rs56388170	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p15.1	NR	rs56388170-T	0.283687	7E-209				Affymetrix, Illumina [24649327] (imputed)	N
804	chr7	28724373	28724374	rs56388170	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	7p15.1	NR	rs56388170-T	0.294509	3E-185		0.059326	[0.055-0.063] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
804	chr7	28724373	28724374	rs56388170	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	151,807 East Asian ancestry individuals	NA	7p15.1	NR	rs56388170-G	0.783956	7E-23		0.04617	[0.037-0.055] SD units decrease	Affymetrix, Illumina [16710636] (imputed)	N
804	chr7	28724373	28724374	rs56388170	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p15.1	NR	rs56388170-T	0.289812	3E-266				Affymetrix, Illumina [23114412] (imputed)	N
804	chr7	28724373	28724374	rs56388170	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	7p15.1	NR	rs56388170-T	0.293956	1E-236		0.070039	[0.066-0.074] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
804	chr7	28724373	28724374	rs56388170	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p15.1	NR	rs56388170-T	0.287972	9E-41				Affymetrix, Illumina [19905671] (imputed)	N
804	chr7	28724373	28724374	rs56388170	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	7p15.1	NR	rs56388170-T	0.293002	3E-43		0.031399	[0.027-0.036] SD unit increase	Affymetrix, Illumina [50036608] (imputed)	N
804	chr7	28724373	28724374	rs56388170	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	White blood cell count	8,825 African American individuals, 18,251 Hispanic/Latino individuals, 543 Asian ancestry individuals, 606 Native American ancestry individuals, 383 individuals	NA	7p15.1	NR	rs56388170-?	NR	2E-9		0.01556284	[0.01-0.021] unit increase	Illumina [30613845] (imputed)	N
804	chr7	28724373	28724374	rs56388170	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	7p15.1		rs56388170-?	NR	2E-132				NR [~ 8900000] (imputed)	N
804	chr7	28724373	28724374	rs56388170	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count (basophil)	171,846 European ancestry individuals	NA	7p15.1	CREB5	rs56388170-T	0.2957	8E-15		0.03018293	[0.023-0.038] unit increase	Affymetrix [~ 2500000] (imputed)	N
804	chr7	28724373	28724374	rs56388170	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	7p15.1	CREB5	rs56388170-T	0.2958	7E-56		0.06276391	[0.055-0.071] unit increase	Affymetrix [~ 2500000] (imputed)	N
804	chr7	28724373	28724374	rs56388170	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	7p15.1	CREB5	rs56388170-T	0.2958	8E-77		0.07391877	[0.066-0.082] unit increase	Affymetrix [~ 2500000] (imputed)	N
804	chr7	28724373	28724374	rs56388170	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	7p15.1	CREB5	rs56388170-T	0.2959	3E-80		0.07562601	[0.068-0.083] unit increase	Affymetrix [~ 2500000] (imputed)	N
804	chr7	28724373	28724374	rs56388170	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	7p15.1	CREB5	rs56388170-T	0.2957	3E-54		0.06154059	[0.054-0.069] unit increase	Affymetrix [~ 2500000] (imputed)	N
804	chr7	28724373	28724374	rs56388170	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	7p15.1	CREB5	rs56388170-T	0.2957	7E-10		0.02449868	[0.017-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
804	chr7	28724373	28724374	rs56388170	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	7p15.1	CREB5	rs56388170-T	0.2958	4E-79		0.07497675	[0.067-0.083] unit increase	Affymetrix [~ 2500000] (imputed)	N
804	chr7	28724373	28724374	rs56388170	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	7p15.1	CREB5	rs56388170-T	0.2958	2E-72		0.07197171	[0.064-0.08] unit increase	Affymetrix [~ 2500000] (imputed)	N
804	chr7	28724373	28724374	rs56388170	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	7p15.1	CREB5	rs56388170-T	0.2957	2E-28		0.04385286	[0.036-0.052] unit decrease	Affymetrix [~ 2500000] (imputed)	N
804	chr7	28724373	28724374	rs56388170	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	7p15.1	CREB5	rs56388170-T	0.2957	4E-42		0.0538517	[0.046-0.062] unit decrease	Affymetrix [~ 2500000] (imputed)	N
804	chr7	28724373	28724374	rs56388170	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	7p15.1	CREB5	rs56388170-T	0.2956	5E-49		0.05842803	[0.051-0.066] unit increase	Affymetrix [~ 2500000] (imputed)	N
804	chr7	28724373	28724374	rs56388170	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	7p15.1	CREB5	rs56388170-T	0.2958	6E-78		0.07457882	[0.067-0.082] unit increase	Affymetrix [~ 2500000] (imputed)	N
804	chr7	28724373	28724374	rs56388170	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	7p15.1	CREB5	rs56388170-T	0.2957	4E-11		0.02632606	[0.019-0.034] unit decrease	Affymetrix [~ 2500000] (imputed)	N
804	chr7	28724490	28724491	rs10238435	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	7p15.1		rs10238435-T	NR	2E-14		0.0215	[0.016-0.027] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
804	chr7	28724490	28724491	rs10238435	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	7p15.1	CREB5	rs10238435-T	0.238557	1E-17		0.023076594	[0.018-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
804	chr7	28724490	28724491	rs10238435	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p15.1	NR	rs10238435-T	0.212027	3E-22				Affymetrix, Illumina [23467995] (imputed)	N
804	chr7	28724490	28724491	rs10238435	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	7p15.1	NR	rs10238435-T	0.239724	4E-25		0.023569	[0.019-0.028] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
804	chr7	28725432	28725433	rs75604893	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7p15.1		rs75604893-?	NR	8E-18				NR [~ 8900000] (imputed)	N
804	chr7	28725535	28725536	rs757980	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	7p15.1	CREB5	rs757980-G	0.245971	2E-59		0.0346923	[0.031-0.039] unit increase	NR [13737936] (imputed)	N
804	chr7	28725535	28725536	rs757980	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	7p15.1		rs757980-?	NR	1E-60				NR [~ 8900000] (imputed)	N
804	chr7	28725535	28725536	rs757980	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	7p15.1		rs757980-?	NR	4E-64		0.0398868	[0.035-0.045] unit increase	Affymetrix [20259828] (imputed)	N
804	chr7	28725535	28725536	rs757980	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	7p15.1	CREB5	rs757980-G	0.249058	2E-13	(women)	0.0373091	[0.027-0.048] unit increase	NR [17166351] (imputed)	N
804	chr7	28725535	28725536	rs757980	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	7p15.1	CREB5	rs757980-G	0.248863	9E-23		0.037514	[0.03-0.045] unit increase	NR [17166351] (imputed)	N
804	chr7	28725535	28725536	rs757980	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	7p15.1	CREB5	rs757980-G	0.24864	2E-9	(men)	0.0367881	[0.025-0.049] unit increase	NR [17166351] (imputed)	N
804	chr7	28730008	28730009	rs9691873	30972912	Wei L	2019-04-10	J Viral Hepat	Genetic variation in FCER1A predicts peginterferon alfa-2a-induced hepatitis B surface antigen clearance in East Asian patients with chronic hepatitis B.	Peginterferon alfa-2a treatment response in chronic hepatitis B infection	up to 1,108 East Asian cases, up to 465 European ancestry cases, up to 63 cases	NA	7p15.1	CREB5	rs9691873-?		9E-6	(endpoint 5, East Asian)		[NR]	Illumina [> 750000]	N
804	chr7	28731511	28731512	rs11976006	31311600	Namjou B	2019-07-17	BMC Med	GWAS and enrichment analyses of non-alcoholic fatty liver disease identify new trait-associated genes and pathways across eMERGE Network.	Alanine aminotransferase levels in non-alcoholic fatty liver disease	1,075 European ancestry individuals	NA	7p15.1	CREB5	rs11976006-A	0.0176416	1E-6		0.688165	[0.41-0.96] unit increase	NR [7263501] (imputed)	N
804	chr7	28751786	28751787	rs10226517	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	7p15.1		rs10226517-?	NR	2E-9				NR [~ 8900000] (imputed)	N
804	chr7	28762962	28762963	rs2237349	18839057	Lesch KP	2008-10-07	J Neural Transm (Vienna)	Molecular genetics of adult ADHD: converging evidence from genome-wide association and extended pedigree linkage studies.	Attention deficit hyperactivity disorder	343 European ancestry cases, 250 European ancestry controls, 54 controls	NA	7p15.1	CREB5	rs2237349-?	NR	5E-6				Affymetrix [504219]	N
804	chr7	28773596	28773597	rs10230283	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	7p15.1	CREB5	rs10230283-T	NR	4E-8		0.0155209	[0.01-0.0211] unit increase	Affymetrix [321016] (imputed)	N
804	chr7	28790219	28790219	rs3216233	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	7p15.1	CREB5	rs3216233-ATT	0.549154	1E-12		0.016990473	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
804	chr7	28795908	28795909	rs2237352	33979311	Yanik EL	2021-05-12	J Bone Joint Surg Am	Identification of a Novel Genetic Marker for Risk of Degenerative Rotator Cuff Disease Surgery in the UK Biobank.	Degenerative rotator cuff disease surgery	2,917 British ancestry cases, 14,158 British ancestry controls	NA	7p15.1		rs2237352-C	0.468	4E-8		1.17	[1.11-1.24]	Affymetrix [10815322] (imputed)	N
804	chr7	28801300	28801301	rs4722843	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	7p15.1		rs4722843-?	NR	8E-15				NR [~ 8900000] (imputed)	N
804	chr7	28803910	28803911	rs28531809	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	7p15.1	CREB5	rs28531809-?	NR	4E-8		1.0447137	NR	Affymetrix [9154080] (imputed)	N
804	chr7	28812492	28812493	rs10238623	24047446	Schosser A	2013-09-19	World J Biol Psychiatry	Genome-wide association study of co-occurring anxiety in major depression.	Anxiety in major depressive disorder	1,080 European ancestry cases, 442 European ancestry controls	NA	7p15.1	CREB5	rs10238623-A	0.28	5E-6	(Dichotomous)	1.545	[NR]	Illumina [471581]	N
804	chr7	28815238	28815239	rs2299116	25436638	Malinowski JR	2014-12-01	PLoS One	Genetic variants associated with serum thyroid stimulating hormone (TSH) levels in European Americans and African Americans from the eMERGE Network.	Serum thyroid-stimulating hormone levels	4,501 European ancestry individuals, 351 African American individuals	NA	7p15.1	CREB5	rs2299116-A	0.17	8E-6	(AA)	0.25	[0.13-0.37] unit increase	Illumina [up to 905285]	N
804	chr7	28819212	28819213	rs34820887	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	7p15.1	CREB5	rs34820887-C	NR	3E-10		0.0202282	[0.014-0.027] unit decrease	Affymetrix [323123] (imputed)	N
804	chr7	28819841	28819842	rs73077895	25763902	Draaken M	2015-03-12	PLoS Genet	Genome-wide association study and meta-analysis identify ISL1 as genome-wide significant susceptibility gene for bladder exstrophy.	Classic bladder exstrophy	208 European ancestry cases, 1,703 European ancestry controls	NA	7p15.1	NR	rs73077895-A	0.016	7E-6		5.35	[2.58-11.11]	Illumina [7261187] (imputed)	N
804	chr7	28823451	28823452	rs6976396	33385171	Hagg S	2020-12-31	Hum Genet	Deciphering the genetic and epidemiological landscape of mitochondrial DNA abundance.	Mitochondrial DNA levels	295,150 European ancestry individuals	NA	7p15.1	NR	rs6976396-A	0.1759	2E-9		0.0211083	[0.014-0.028] unit decrease	Affymetrix [3505788] (imputed)	N
804	chr7	28823691	28823692	rs6977136	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	7p15.1		rs6977136-?	NR	2E-9				NR [~ 8900000] (imputed)	N
804	chr7	28827546	28827547	rs2237360	31372216	Haaland OA	2019-06-24	F1000Res	A genome-wide scan of cleft lip triads identifies parent-of-origin interaction effects between ANK3 and maternal smoking, and between ARHGEF10 and alcohol consumption.	Cleft lip with or without cleft palate x maternal periconceptional vitamin use interaction (parent of origin effect)	825 European ancestry case-parent duos or trios, 1,024 Asian ancestry case-parent duos or trios, 59 case-parent duos or trios	NA	7p15.1	CREB5	rs2237360-?	NR	4E-6	(EA)	0.29	[0.18-0.50]	NR [341191]	N
804	chr7	28829252	28829253	rs62442203	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	7p15.1	CREB5	rs62442203-C	NR	3E-11		0.0191748	[0.014-0.025] unit decrease	Affymetrix [321016] (imputed)	N
804	chr7	28829252	28829253	rs62442203	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	7p15.1	CREB5	rs62442203-C	0.4031	5E-23		0.0191	[0.015-0.023] unit decrease	Affymetrix [18391927] (imputed)	N
804	chr7	28829252	28829253	rs62442203	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7p15.1		rs62442203-?	NR	8E-51				NR [~ 8900000] (imputed)	N
804	chr7	28829252	28829253	rs62442203	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	7p15.1	CREB5	rs62442203-C	0.4039	3E-9		0.002	[0.0014-0.0026] unit increase	Affymetrix [15275733] (imputed)	N
805	chr7	28842969	28842970	rs12700906	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	7p14.3	CREB5	rs12700906-T	0.5957	1E-6		0.0334	[0.02-0.047] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
805	chr7	28856688	28856689	rs886750	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	7p14.3	CREB5	rs886750-A	NR	5E-9		0.0202381	[0.013-0.027] unit increase	Affymetrix [323123] (imputed)	N
805	chr7	28868085	28868086	rs77702473	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	7p14.3	NR	rs77702473-G	0.1066	2E-6	(EA)	0.0481	[0.028-0.068] unit decrease	Illumina [~ 11800000] (imputed)	N
805	chr7	28901964	28901965	rs10279833	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental longevity (combined parental age at death)	45,627 middle-aged British individuals	NA	7p14.3	NR	rs10279833-?	NR	8E-6		0.049891	[0.028-0.072] unit increase	Affymetrix [9658292] (imputed)	N
805	chr7	28911806	28911807	rs11769293	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Vascular brain injury	up to 2,940 individuals	NA	7p14.3	intergenic	rs11769293-T	0.0291	1E-6		1.0518	[0.62-1.48] unit increase	Affymetrix, Illumina [NR] (imputed)	N
805	chr7	28911806	28911807	rs11769293	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Vascular brain injury	up to 2,940 individuals	NA	7p14.3	intergenic	rs11769293-T	0.0289	8E-6	(Ordinal)	0.9011	[0.51-1.3] unit increase	Affymetrix, Illumina [NR] (imputed)	N
805	chr7	28933627	28933628	rs1558032	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	7p14.3	NR	rs1558032-C	NR	4E-10		0.0228	[0.016-0.03] unit decrease	Affymetrix [9000000] (imputed)	N
805	chr7	28937082	28937083	rs12112406	31645637	Nagtegaal AP	2019-10-23	Sci Rep	Genome-wide association meta-analysis identifies five novel loci for age-related hearing impairment.	Age-related hearing impairment (high frequency)	9,675 European ancestry individuals	3,319 European ancestry individuals, 6,909 Hispanic individuals, 735 African American individuals	7p14.3	NR	rs12112406-A	0.26	5E-8	(EA)	0.083	[0.054-0.112] unit increase	Affymetrix, Illumina [NR] (imputed)	N
805	chr7	28944030	28944031	rs149354778	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Smoking behaviour (cigarettes smoked per day)	7,171 African American individuals, 4,198 Hispanic/Latino individuals, 1,918 Asian ancestry individuals, 2,176 Native Hawaiian ancestry individuals, 288 Native American ancestry individuals, 111 individuals	NA	7p14.3	CREB5, TRIL	rs149354778-?	NR	9E-10	(AA)	0.3687335	[0.25-0.49] unit decrease	Illumina [27957689] (imputed)	N
805	chr7	28944030	28944031	rs149354778	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Smoking behaviour (cigarettes smoked per day)	7,171 African American individuals, 4,198 Hispanic/Latino individuals, 1,918 Asian ancestry individuals, 2,176 Native Hawaiian ancestry individuals, 288 Native American ancestry individuals, 111 individuals	NA	7p14.3	CREB5, TRIL	rs149354778-?	NR	6E-9		0.338	[0.22-0.45] unit decrease	Illumina [27957689] (imputed)	N
805	chr7	28955736	28955737	rs74994249	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7p14.3	NR	rs74994249-C	0.01045	6E-11	(ACOT13)	0.2436	NR unit increase	Illumina [1671387] (imputed)	N
806	chr7	29005573	29005573	rs11386980	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	7p14.3	NR	rs11386980-?	NR	3E-11				Illumina [at least 7383741] (imputed)	N
806	chr7	29007666	29007667	rs493724	34563919	Chiba Y	2021-09-20	J Neurol Sci	Genetic and demographic predisposing factors associated with pediatric sleepwalking in the Philadelphia Neurodevelopmental Cohort.	Sleepwalking	155 African American cases, 2,598 African American controls	NA	7p14.3		rs493724-?	NR	9E-7		3.641		Illumina [NR] (imputed)	N
806	chr7	29014194	29014195	rs2018683	23478653	Han JY	2013-03-12	Pharmacogenomics J	A genome-wide association study of survival in small-cell lung cancer patients treated with irinotecan plus cisplatin chemotherapy.	Response to irinotecan and platinum-based chemotherapy in non-small-cell lung cancer	139 individuals	NA	7p14.3	intergenic	rs2018683-T	NR	8E-7	(Recessive model)	7.8	[3.4-17.7]	Affymetrix [334127]	N
806	chr7	29041189	29041190	rs2252521	19734545	Need AC	2009-09-04	Hum Mol Genet	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA	7p14.3	CPVL	rs2252521-?	0.3363	5E-6	(PAL8)			Illumina [475971]	N
806	chr7	29061723	29061724	rs11764430	34226506	Cox J	2021-06-29	Transl Psychiatry	Genome-wide association study of stimulant dependence.	Stimulant dependence	393 European ancestry cases, 5,287 European ancestry controls, 155 African American or Afro-Caribbean cases, 5,603 African American or Afro-Caribbean controls	532 European ancestry cases, 7,103 European ancestry controls, 53 African American or Afro-Caribbean cases, 3,299 African American or Afro-Caribbean controls	7p14.3		rs11764430-T	NR	3E-7		1.37		Illumina [NR] (imputed)	N
806	chr7	29061723	29061724	rs11764430	34226506	Cox J	2021-06-29	Transl Psychiatry	Genome-wide association study of stimulant dependence.	Stimulant dependence	155 African American or Afro-Caribbean cases, 5,603 African American or Afro-Caribbean controls	53 African American or Afro-Caribbean cases, 3,299 African American or Afro-Caribbean controls	7p14.3		rs11764430-T	NR	8E-6		1.61		Illumina [NR] (imputed)	N
807	chr7	29105114	29105115	rs546783	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	7p14.3	NR	rs546783-?	NR	5E-6		4.558	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
807	chr7	29107991	29107992	rs34541550	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal cancer	978 Austrian ancestry colorectal cancer cases, 636 Austrian ancestry advanced colorectal adenoma cases, 4,294 European ancestry controls	NA	7p14.3	Intergenic	rs34541550-?		5E-6		1.302	[NR]	Affymetrix [492217] (imputed)	N
807	chr7	29130952	29130953	rs1861116	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	7p14.3		rs1861116-?	NR	3E-10				NR [~ 8900000] (imputed)	N
807	chr7	29132278	29132279	rs117744081	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Skin cancer	25,928 European ancestry cases, 466,275 European ancestry controls, 154 East Asian ancestry cases, 178,572 East Asian ancestry controls	NA	7p14.3		rs117744081-G	NR	3E-13		0.1998	[0.15-0.25] unit decrease	Affymetrix, Illumina [25845421] (imputed)	N
807	chr7	29132278	29132279	rs117744081	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	7p14.3		rs117744081-?	NR	9E-10		0.816169	[0.75-0.88]	NR [685523]	N
807	chr7	29132278	29132279	rs117744081	33549134	Adolphe C	2021-02-06	Genome Med	Genetic and functional interaction network analysis reveals global enrichment of regulatory T cell genes influencing basal cell carcinoma susceptibility.	Basal cell carcinoma	17,416 European ancestry cases, 375,455 European ancestry controls	NA	7p14.3	CPVL	rs117744081-G	0.032237	5E-13		0.24633466	[0.18-0.31] unit decrease	Affymetrix [7260263] (imputed)	N
807	chr7	29132278	29132279	rs117744081	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Keratinocyte cancer (MTAG)	at least 18,538 European ancestry cases, at least 340,302 European ancestry controls	NA	7p14.3	CPVL	rs117744081-A	0.967444	2E-19		1.2658228	[1.2-1.33]	Affymetrix [7600000] (imputed)	N
807	chr7	29132278	29132279	rs117744081	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Basal cell carcinoma	31,787 European ancestry cases, 619,351 European ancestry controls	NA	7p14.3	CPVL	rs117744081-A	0.972159	1E-19		1.29	[1.23-1.34]	Affymetrix, Illumina [up to 9061544] (imputed)	N
807	chr7	29132278	29132279	rs117744081	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Non-melanoma skin cancer	5,912 European ancestry cases, 181,740 European ancestry controls		7p14.3	CPVL	rs117744081-G	NR	3E-9		1.45	[1.28-1.64	Affymetrix [5734850] (imputed)	N
807	chr7	29132278	29132279	rs117744081	27723757	Jin Y	2016-11-01	Nat Genet	Genome-wide association studies of autoimmune vitiligo identify 23 new risk loci and highlight key pathways and regulatory variants.	Vitiligo	2,853 European ancestry cases and 37,405 European ancestry controls	1,827 European ancestry cases and 2,181 European ancestry controls	7p14.3	CPVL	rs117744081-G	0.03017	9E-26		1.837	[1.64-2.06]	Illumina [8966411] (imputed)	N
807	chr7	29143078	29143079	rs6979813	29356057	Du Z	2018-01-21	Prostate	Genetic risk of prostate cancer in Ugandan men.	Prostate cancer	560 Ugandan ancestry cases, 480 Ugandan ancestry controls	NA	7p14.3	NR	rs6979813-C	0.72	6E-6		1.7	[1.35-2.14]	Illumina [17125421] (imputed)	N
807	chr7	29150706	29150707	rs323187	29921221	Cha S	2018-06-19	BMC Genomics	Identification of five novel genetic loci related to facial morphology by genome-wide association studies.	Forehead morphology	5,643 Korean ancestry individuals	1,926 Korean ancestry individuals	7p14.3	CPVL	rs323187-G	0.42	4E-6	(Brow ridge height)	0.32	[NR] unit decrease	Affymetrix [311944]	N
807	chr7	29163328	29163329	rs13228017	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	7p14.3		rs13228017-G	0.16	2E-8		5.64	z score increase	Affymetrix [9061022] (imputed)	N
807	chr7	29163328	29163329	rs13228017	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	7p14.3	NR	rs13228017-G	0.1245	5E-10				NR [9056863] (imputed)	N
807	chr7	29178680	29178681	rs13233841	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	7p14.3		rs13233841-C	0.16	8E-14		7.48	z score increase	Affymetrix [9061022] (imputed)	N
807	chr7	29178680	29178681	rs13233841	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	7p14.3		rs13233841-C	0.16	1E-8		5.71	z score increase	Affymetrix [9061022] (imputed)	N
807	chr7	29178680	29178681	rs13233841	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	7p14.3	NR	rs13233841-C	0.1213	1E-9				NR [9056863] (imputed)	N
807	chr7	29179185	29179186	rs9639594	30093612	O'Mara TA	2018-08-09	Nat Commun	Identification of nine new susceptibility loci for endometrial cancer.	Endometrial cancer (endometrioid histology)	8,758 European ancestry cases, 46,126 European ancestry controls	NA	7p14.3	CPVL	rs9639594-A	0.20620799999999995	2E-8		1.14	[1.09-1.19]	Affymetrix, Illumina [~ 11700000] (imputed)	N
807	chr7	29184488	29184489	rs10486607	17903298	Meigs JB	2007-09-19	BMC Med Genet	Genome-wide association with diabetes-related traits in the Framingham Heart Study.	Diabetes related insulin traits	Up to 982 individuals	NA	7p14.3	CPVL	rs10486607-?	NR	8E-6	(HbA1C)			Affymetrix [70897]	N
807	chr7	29186255	29186256	rs245880	26265036	Parra EJ	2015-08-12	Pharmacogenomics	Genome-wide association study of warfarin maintenance dose in a Brazilian sample.	Warfarin maintenance dose	180 Brazilian ancestry low dose individuals, 187 Brazilian ancestry high dose individuals	798 European ancestry individuals, 1611 Japanese ancestry individuals, 191 African American individuals	7p14.3	NR	rs245880-A	0.531	8E-6	(conditional on rs749671,CYP2C9*2 and CYP2C9*3, Brazilians)	4.6948357	[NR]	Affymetrix [> 650000] (imputed)	N
807	chr7	29188996	29188997	rs117067567	27629369	Gao J	2016-09-15	Neuropsychopharmacology	Genome-Wide Association Study of Loneliness Demonstrates a Role for Common Variation.	Loneliness (linear analysis)	8,490 European ancestry individuals, 1,228 African American individuals, 867 Hispanic American individuals, 175 individuals	NA	7p14.3	CHN2	rs117067567-?		7E-6	(EA)	0.351	[0.2-0.5] unit increase	Illumina [7205781] (imputed)	N
807	chr7	29209351	29209352	rs245908	31766143	Ortega-Azorin C	2019-11-13	Nutrients	Candidate Gene and Genome-Wide Association Studies for Circulating Leptin Levels Reveal Population and Sex-Specific Associations in High Cardiovascular Risk Mediterranean Subjects.	Circulating leptin levels in high cardiovascular risk	351 Spanish mediterranean ancestry men, 615 Spanish mediterranean ancestry women	NA	7p14.3	CHN2	rs245908-?	0.38	2E-7	(model 2)	0.16	NR unit decrease	Illumina [628376]	N
807	chr7	29218158	29218159	rs245914	24132900	Kanazawa T	2013-10-01	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of atypical psychosis.	Psychosis (atypical)	47 Japanese ancestry cases, 882 Japanese ancestry controls	NA	7p14.3	CHN2, CPVL	rs245914-?		2E-7				Affymetrix [545513]	N
807	chr7	29218158	29218159	rs245914	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	7p14.3	CHN2	rs245914-A	0.149	6E-6	(Weight z-score )	0.03	[NR] SD increase	Illumina [899892]	N
807	chr7	29218158	29218159	rs245914	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	7p14.3	CHN2	rs245914-A	0.149	3E-6	(Fat mass )	0.03	[NR] % increase	Illumina [899892]	N
808	chr7	29236063	29236064	rs187483667	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage Migration Inhibitory Factor levels	3,494 Finnish ancestry individuals	NA	7p14.3	NR	rs187483667-C	NR	7E-6		0.9358	[0.52-1.35] SD units decrease	NR [10700000] (imputed)	N
808	chr7	29250267	29250268	rs56357845	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	7p14.3	Intergenic	rs56357845-A	NR	7E-7	(between families)	4.958	unit increase	Affymetrix [up to 15107142] (imputed)	N
808	chr7	29319248	29319249	rs11980456	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	7p14.3	CHN2	rs11980456-G	0.708535	3E-8		0.0123304	[0.008-0.0167] unit decrease	Affymetrix [NR] (imputed)	N
808	chr7	29325513	29325514	rs10250407	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	7p14.3	CHN2	rs10250407-T	0.9545	8E-6		0.073	[0.041-0.105] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
808	chr7	29328274	29328275	rs2051839	29855537	Hirata T	2018-05-31	Sci Rep	Japanese GWAS identifies variants for bust-size, dysmenorrhea, and menstrual fever that are eQTLs for relevant protein-coding or long non-coding RNAs.	Heavy vaginal discharge	457 Japanese ancestry female cases, 5,277 Japanese ancestry female controls	471 Japanese ancestry female cases, 5,143 Japanese ancestry female controls	7p14.3	NR	rs2051839-G	0.816396102	6E-6		0.26762575	[0.15-0.38] unit decrease	Affymetrix [536506]	N
809	chr7	29400309	29400310	rs6960085	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	7p14.3		rs6960085-?	NR	5E-14				NR [~ 8900000] (imputed)	N
809	chr7	29400309	29400310	rs6960085	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	7p14.3	NR	rs6960085-T	0.479817	3E-16		0.0251852	[0.019-0.031] unit increase	NR [19129689] (imputed)	N
809	chr7	29403187	29403188	rs2391754	29395996	van Laarhoven A	2018-01-23	Lancet Infect Dis	Cerebral tryptophan metabolism and outcome of tuberculous meningitis: an observational cohort study.	CSF tryptophan concentration in tuberculous meningitis	130 individuals	NA	7p14.3	CHN2	rs2391754-?		3E-6		1.73	unit increase	Illumina [4751257] (imputed)	N
809	chr7	29406680	29406681	rs7811771	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 117)	19,670 European ancestry individuals	NA	7p14.3		rs7811771-?	NR	2E-8				NR [9705931] (imputed)	N
809	chr7	29421785	29421786	rs12673506	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Tannerellaceae abundance in stool	5,959 Finnish ancestry individuals	NA	7p14.3		rs12673506-A	0.201481	2E-8		0.0933556	[0.061-0.126] unit increase	Illumina [7980478] (imputed)	N
809	chr7	29421785	29421786	rs12673506	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Parabacteroides abundance in stool	5,959 Finnish ancestry individuals	NA	7p14.3		rs12673506-A	0.201481	8E-9		0.10188	[0.067-0.136] unit increase	Illumina [7980478] (imputed)	N
809	chr7	29426749	29426750	rs3793275	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs non-severe)	86 Finnish ancestry male severe erosion cases, 50 Finnish ancestry female severe erosion cases, 817 Finnish ancestry male non-severe erosion controls, 991 Finnish ancestry female non-severe erosion controls	NA	7p14.3	NR	rs3793275-?	NR	6E-6				Illumina [NR] (imputed)	N
809	chr7	29432185	29432186	rs149639610	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		AC004593.3	rs149639610-?	NR	1E-9	(female)	0.560511	[NR] unit increase	Affymetrix [NR] (imputed)	N
809	chr7	29433922	29433923	rs60903523	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs none or mild)	136 Finnish ancestry severe erosion cases, 1011 Finnish ancestry mild or no erosion controls	NA	7p14.3	CHN2	rs60903523-?	NR	5E-6				Illumina [NR] (imputed)	N
809	chr7	29433922	29433923	rs60903523	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs non-severe)	86 Finnish ancestry male severe erosion cases, 50 Finnish ancestry female severe erosion cases, 817 Finnish ancestry male non-severe erosion controls, 991 Finnish ancestry female non-severe erosion controls	NA	7p14.3	CHN2	rs60903523-?	NR	9E-6		2.5	[1.63-3.76]	Illumina [NR] (imputed)	N
809	chr7	29434041	29434042	rs60152274	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs non-severe)	86 Finnish ancestry male severe erosion cases, 50 Finnish ancestry female severe erosion cases, 817 Finnish ancestry male non-severe erosion controls, 991 Finnish ancestry female non-severe erosion controls	NA	7p14.3	NR	rs60152274-?	NR	9E-6				Illumina [NR] (imputed)	N
809	chr7	29435838	29435839	rs55796771	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs non-severe)	86 Finnish ancestry male severe erosion cases, 50 Finnish ancestry female severe erosion cases, 817 Finnish ancestry male non-severe erosion controls, 991 Finnish ancestry female non-severe erosion controls	NA	7p14.3	NR	rs55796771-?	NR	9E-6				Illumina [NR] (imputed)	N
809	chr7	29437195	29437196	rs1034720	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota alpha diversity (PD_whole_tree index)	1,068 Japanese ancestry individuals	NA	7p14.3	CHN2	rs1034720-G	0.42	3E-6	(male)	1.17	[0.68-1.66] unit decrease	Illumina [6380737] (imputed)	N
809	chr7	29437865	29437866	rs60864303	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs non-severe)	86 Finnish ancestry male severe erosion cases, 50 Finnish ancestry female severe erosion cases, 817 Finnish ancestry male non-severe erosion controls, 991 Finnish ancestry female non-severe erosion controls	NA	7p14.3	NR	rs60864303-?	NR	6E-6				Illumina [NR] (imputed)	N
809	chr7	29440194	29440195	rs34045356	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs non-severe)	86 Finnish ancestry male severe erosion cases, 50 Finnish ancestry female severe erosion cases, 817 Finnish ancestry male non-severe erosion controls, 991 Finnish ancestry female non-severe erosion controls	NA	7p14.3	NR	rs34045356-?	NR	9E-6				Illumina [NR] (imputed)	N
809	chr7	29446987	29446988	rs7799913	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs non-severe)	86 Finnish ancestry male severe erosion cases, 50 Finnish ancestry female severe erosion cases, 817 Finnish ancestry male non-severe erosion controls, 991 Finnish ancestry female non-severe erosion controls	NA	7p14.3	NR	rs7799913-?	NR	3E-6				Illumina [NR] (imputed)	N
809	chr7	29449859	29449860	rs76191430	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs non-severe)	86 Finnish ancestry male severe erosion cases, 50 Finnish ancestry female severe erosion cases, 817 Finnish ancestry male non-severe erosion controls, 991 Finnish ancestry female non-severe erosion controls	NA	7p14.3	NR	rs76191430-?	NR	3E-6				Illumina [NR] (imputed)	N
809	chr7	29450229	29450230	rs118097405	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs non-severe)	86 Finnish ancestry male severe erosion cases, 50 Finnish ancestry female severe erosion cases, 817 Finnish ancestry male non-severe erosion controls, 991 Finnish ancestry female non-severe erosion controls	NA	7p14.3	NR	rs118097405-?	NR	3E-6				Illumina [NR] (imputed)	N
809	chr7	29456279	29456280	rs79489058	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	7p14.3	NR	rs79489058-?	NR	5E-6	(AA)	1.3914	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
810	chr7	29514058	29514059	rs722611	28115739	Smith AH	2017-01-24	Mol Psychiatry	Genome-wide association study of therapeutic opioid dosing identifies a novel locus upstream of OPRM1.	Methadone dose in opioid dependence	1,027 European American cases, 383 African American cases	NA	7p14.3	CHN2	rs722611-G	0.2113035053554041	9E-6	(EA)	0.2486	[0.14-0.36] unit increase	Illumina [at least 988306] (imputed)	N
810	chr7	29518840	29518841	rs17752156	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	7p14.3	CHN2	rs17752156-G	NR	5E-6	(men)	0.0283046	[0.016-0.04] unit increase	Illumina [13520550] (imputed)	N
810	chr7	29550828	29550829	rs7782730	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	7p14.3	NR	rs7782730-?	NR	4E-10				Affymetrix [NR]	N
810	chr7	29570900	29570901	rs4483062	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	7p14.3		rs4483062-T	NR	4E-8		0.013	[0.0083-0.0177] unit decrease	Affymetrix, Illumina [20538307] (imputed)	N
810	chr7	29590943	29590944	rs6974343	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	7p14.3	PRR15	rs6974343-A	0.2381	2E-8		0.0045	[0.0029-0.0061] unit decrease	Affymetrix, Illumina [8176554] (imputed)	N
811	chr7	29691437	29691438	rs17604090	28608620	Coleman JRI	2017-06-13	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of facial emotion recognition in children and association with polygenic risk for mental health disorders.	Facial emotion recognition (sad faces)	4,097 European ancestry individuals	NA	7p14.3	CHN2, PRR15, WIPF3	rs17604090-A	0.151	4E-6		4.6	z score increase	Illumina [2487351] (imputed)	N
811	chr7	29691437	29691438	rs17604090	28608620	Coleman JRI	2017-06-13	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of facial emotion recognition in children and association with polygenic risk for mental health disorders.	Facial emotion recognition	4,097 European ancestry individuals	NA	7p14.3	CHN2, PRR15, WIPF3	rs17604090-A	0.151	3E-6		4.71	z score increase	Illumina [2487351] (imputed)	N
811	chr7	29697252	29697253	rs10248839	28608620	Coleman JRI	2017-06-13	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of facial emotion recognition in children and association with polygenic risk for mental health disorders.	Facial emotion recognition (angry faces)	4,097 European ancestry individuals	NA	7p14.3	CHN2, PRR15, WIPF3	rs10248839-C	0.16	4E-6		4.61	z score increase	Illumina [2487351] (imputed)	N
812	chr7	29780783	29780784	rs850092	30794219	MacInnes SJ	2019-02-01	Clin Orthop Relat Res	The 2018 Otto Aufranc Award: How Does Genome-wide Variation Affect Osteolysis Risk After THA?	Osteolysis in total hip arthroplasty	1,096 European ancestry cases, 2,418 European ancestry controls	NA	7p14.3	NR	rs850092-A	0.72	1E-6		1.41	[1.23-1.61]	Illumina [5411522] (imputed)	N
812	chr7	29794936	29794937	rs9638860	31630189	Casanova F	2019-10-20	Hum Mol Genet	A genome-wide association study implicates multiple mechanisms influencing raised urinary albumin-creatinine ratio.	Urinary albumin-to-creatinine ratio	437,027 European ancestry individuals	60,130 individuals	7p14.3	DPY19L2P3, WIPF3	rs9638860-T	0.26	2E-13	(EA)	0.017	[0.013-0.021] unit increase	NR [12082474] (imputed)	N
812	chr7	29805360	29805361	rs17158386	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals, 6,795 African American individuals, 6,324 East Asian ancestry individuals, 2,335 South Asian ancestry individuals, 1,442 Hispanic individuals	NA	7p14.3	WIPF3	rs17158386-A	NR	5E-18		0.02	[0.015-0.025] unit increase	Affymetrix, Illumina [8034757] (imputed)	N
812	chr7	29805360	29805361	rs17158386	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals	NA	7p14.3	WIPF3	rs17158386-A	0.2584	2E-17		0.019817	[0.015-0.024] unit increase	Affymetrix, Illumina [8603712] (imputed)	N
812	chr7	29805360	29805361	rs17158386	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Microalbuminuria	51,861 European, African American, East Asian, South Asian or Hispanic ancestry cases, 297,093 European, African American, East Asian, South Asian or Hispanic ancestry controls	NA	7p14.3	WIPF3	rs17158386-A	NR	6E-12		1.0562238	[1.04-1.07]	Affymetrix, Illumina [8326000] (imputed)	N
812	chr7	29805360	29805361	rs17158386	30220432	Haas ME	2018-09-06	Am J Hum Genet	Genetic Association of Albuminuria with Cardiometabolic Disease and Blood Pressure.	Urinary albumin excretion	382,500 European ancestry individuals	NA	7p14.3	WIPF3, DPY19L2P3	rs17158386-A	0.262	4E-12		0.0133	[0.0096-0.017] unit increase	Affymetrix [11709857] (imputed)	N
812	chr7	29853083	29853084	rs62459989	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	7p14.3	WIPF3	rs62459989-C	0.821408	3E-13		0.0173832	[0.013-0.022] unit decrease	NR [13737936] (imputed)	N
812	chr7	29853083	29853084	rs62459989	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	7p14.3		rs62459989-?	NR	2E-14				NR [~ 8900000] (imputed)	N
812	chr7	29853083	29853084	rs62459989	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	7p14.3		rs62459989-?	NR	5E-13		0.0184612	[0.013-0.024] unit decrease	Affymetrix [20259828] (imputed)	N
813	chr7	29919393	29919394	rs67601088	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric bone mineral density (spine)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	7p14.3	NR	rs67601088-A	0.156	1E-6		0.236544	[0.14-0.33] unit increase	Illumina [~ 6600000] (imputed)	N
813	chr7	29921523	29921524	rs740145	22969067	Mishra A	2012-09-13	Invest Ophthalmol Vis Sci	Genetic variants near PDGFRA are associated with corneal curvature in Australians.	Corneal curvature	1,788 European ancestry twins and family members, 1,013 European ancestry unrelated individuals	NA	7p14.3	WIPF3	rs740145-C	NR	5E-6		0.1732	[0.10-0.25] mm decrease	Illumina [1704858] (imputed)	N
813	chr7	29922629	29922630	rs174964	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	7p14.3	NR	rs174964-A	0.815591	2E-10		0.015374	[0.011-0.02] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
813	chr7	29962523	29962524	rs17158483	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	7p14.3	SCRN1	rs17158483-A	0.159	9E-6	(Sleep RQ)	0.03	[NR] unit increase	Illumina [899892]	N
813	chr7	29980470	29980471	rs35960711	25854761	Zuo X	2015-04-09	Nat Commun	Whole-exome SNP array identifies 15 new susceptibility loci for psoriasis.	Psoriasis	11,245 Han Chinese ancestry cases, 11,177 Han Chinese ancestry controls	6,369 Han Chinese ancestry cases, 13,969 Han Chinese ancestry controls	7p14.3	SCRN1	rs35960711-G	NR	4E-53	(fixed)	1.5827794		Illumina [87827]	N
814	chr7	30083020	30083021	rs10488084	22675492	Prescott J	2012-06-04	PLoS One	Genome-wide association study of circulating estradiol, testosterone, and sex hormone-binding globulin in postmenopausal women.	Estradiol levels	1,583 European ancestry female individuals	NA	7p14.3	PLEKHA8, FKBP14	rs10488084-C	0.08	2E-6		0.18	[NR] unit increase	Illumina [~ 2500000] (imputed)	N
814	chr7	30129124	30129125	rs11975522	33002292	Shinohara T	2020-10-01	J Cell Mol Med	Inherited genetic variants associated with glucocorticoid sensitivity in leukaemia cells.	Glucocorticoid receptor gene expression in B-cell precursor acute lymphoblastic leukaemia	72 Japanese ancestry leukaemic cell lines	NA	7p14.3	PLEKHA8	rs11975522-A	0.064	6E-8				Illumina [331281]	N
815	chr7	30182703	30182704	rs73079727	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	7p14.3		rs73079727-T	NR	3E-6		2.7802	[1.65-3.91] unit increase	Illumina [NR] (imputed)	N
815	chr7	30188803	30188804	rs66691214	31533690	Orlova E	2019-09-18	BMC Oral Health	Pilot GWAS of caries in African-Americans shows genetic heterogeneity.	Dental caries (decayed, missing and filled tooth surfaces)	109 African American adults	NA	7p14.3	FKBP14, NOD1	rs66691214-?		7E-7		13.79	[8.97-18.61] unit increase	Illumina [~ 4900000] (imputed)	N
815	chr7	30206678	30206679	rs7780440	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure in major depressive disorder-negative individuals	10,701 European ancestry cases, 39,677 European ancestry controls	NA	7p14.3	NR	rs7780440-T	0.710804	4E-6		1.1337868	[1.08-1.19]	Affymetrix [7791636] (imputed)	N
815	chr7	30243745	30243745	rs34072391	34407845	Morra A	2021-08-18	Breast Cancer Res	Association of germline genetic variants with breast cancer-specific survival in patient subgroups defined by clinic-pathological variables related to tumor biology and type of systemic treatment.	15-year breast cancer-specific survival (treated with anthracyclines)	11,183 European ancestry individuals	NA	7p14.3		rs34072391-?	NR	6E-8		1.27	[1.17-1.39]	NR [10000000] (imputed)	N
815	chr7	30243898	30243899	rs73081523	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (90 or 130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	7p14.3	intergenic	rs73081523-?	NR	6E-6		0.129	[0.058-0.2] unit increase	Illumina [at least 13000000] (imputed)	N
815	chr7	30250335	30250336	rs6969115	32066700	Zhang R	2020-02-05	Transl Psychiatry	Genome-wide study of immune biomarkers in cerebrospinal fluid and serum from patients with bipolar disorder and controls.	Serum immune biomarker levels	184 Scandinavian ancestry bipolar disorder cases, 107 Scandinavian ancestry controls	NA	7p14.3	intergenic	rs6969115-A	0.018	9E-9	(YKL-40)	35.247	NR unit increase	Affymetrix, Illumina [> 5000000] (imputed)	N
816	chr7	30299291	30299292	rs11979716	32066700	Zhang R	2020-02-05	Transl Psychiatry	Genome-wide study of immune biomarkers in cerebrospinal fluid and serum from patients with bipolar disorder and controls.	Serum immune biomarker levels	184 Scandinavian ancestry bipolar disorder cases, 107 Scandinavian ancestry controls	NA	7p14.3	intergenic	rs11979716-T	0.022	5E-8	(YKL-40)	32.63	NR unit increase	Affymetrix, Illumina [> 5000000] (imputed)	N
816	chr7	30302030	30302031	rs10274252	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	7p14.3		rs10274252-A	NR	1E-9		0.0281	[0.019-0.037] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
817	chr7	30490759	30490760	rs2075822	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	7p14.3	NOD1	rs2075822-?		1E-8				Affymetrix, Illumina [NR] (imputed)	N
817	chr7	30494021	30494022	rs7789045	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	7p14.3		rs7789045-A	NR	1E-8		0.0115	[0.0076-0.0154] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
817	chr7	30503279	30503280	rs1558067	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	7p14.3	NOD1	rs1558067-C	0.444094	2E-18		0.019600756	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
817	chr7	30503279	30503280	rs1558067	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	7p14.3	NOD1	rs1558067-C	0.44405	1E-9		0.013667502	[0.0092-0.0181] unit increase	Affymetrix [93095623] (imputed)	N
817	chr7	30503279	30503280	rs1558067	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	7p14.3	NOD1	rs1558067-C	0.444017	3E-9		0.0129642	[0.0089-0.017] unit increase	Affymetrix [93095623] (imputed)	N
817	chr7	30507379	30507380	rs2190504	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	7p14.3	NOD1	rs2190504-C	0.443908	9E-13		0.016085798	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
817	chr7	30507379	30507380	rs2190504	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	7p14.3	NOD1	rs2190504-C	0.443908	2E-14		0.017245445	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
817	chr7	30507379	30507380	rs2190504	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	7p14.3	NOD1	rs2190504-C	0.443963	8E-15		0.017424256	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
817	chr7	30507379	30507380	rs2190504	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	7p14.3	NOD1	rs2190504-C	0.443944	5E-16		0.018195039	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
817	chr7	30507379	30507380	rs2190504	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p14.3	NR	rs2190504-C	0.489513	3E-11				Affymetrix, Illumina [24246363] (imputed)	N
817	chr7	30507379	30507380	rs2190504	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	7p14.3	NR	rs2190504-C	0.443275	1E-10		0.011713	[0.0081-0.0153] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
817	chr7	30511793	30511794	rs2529440	33536631	Bell S	2021-02-03	Commun Biol	A genome-wide meta-analysis yields 46 new loci associating with biomarkers of iron homeostasis.	Iron status biomarkers (ferritin levels)	246,139 European ancestry individuals	NA	7p14.3	NOD1	rs2529440-T	0.446	5E-23		0.035	[0.041-0.028] SD decrease	Affymetrix, Illumina [40000000] (imputed)	N
817	chr7	30511948	30511949	rs2037955	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	7p14.3	NR	rs2037955-?	NR	2E-11				Affymetrix [NR]	N
817	chr7	30514440	30514441	rs6963954	27696742	Yau MS	2016-10-01	Arthritis Rheumatol	Genome-Wide Association Study of Radiographic Knee Osteoarthritis in North American Caucasians.	Knee osteoarthritis	2,672 European ancestry cases, 1,776 European ancestry controls	1,226 European ancestry cases, 1,392 European ancestry controls	7p14.3	NOD1	rs6963954-?	NR	5E-6	(Adjusted for knee trauma)	1.41	[1.20-1.61]	Illumina [at least 8248570] (imputed)	N
817	chr7	30519210	30519211	rs5743329	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	7p14.3		rs5743329-C	NR	4E-8		0.0359	[0.023-0.049] unit decrease	Affymetrix, Illumina [20521447] (imputed)	N
818	chr7	30635520	30635521	rs79870814	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	7p14.3	GARS	rs79870814-?	NR	1E-9		0.046527777	[0.032-0.062] unit increase	Illumina [27896057] (imputed)	N
819	chr7	30674372	30674373	rs116164448	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	7p14.3		rs116164448-T	0.0044435	3E-6		0.23527	[0.14-0.33] unit decrease	Affymetrix [15580782] (imputed)	N
819	chr7	30711509	30711509	rs530051986	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	7p14.3	NR	rs530051986-GAGA	NR	6E-10		0.018	[0.012-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
819	chr7	30711521	30711521	rs10664467	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	7p14.3		rs10664467-GAGA	NR	6E-9		0.0165	[0.011-0.022] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
819	chr7	30714435	30714436	rs2284219	24509480	Mahajan A	2014-02-09	Nat Genet	Genome-wide trans-ancestry meta-analysis provides insight into the genetic architecture of type 2 diabetes susceptibility.	Type 2 diabetes	12,171 European ancestry cases, 56,862 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls	21,491 European ancestry cases, 55,647 European ancestry controls	7p14.3	CRHR2	rs2284219-T		8E-6		1.05	[1.03-1.08]	Affymetrix, Illumina [2500000] (imputed)	N
819	chr7	30716642	30716643	rs2267716	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	7p14.3		rs2267716-C	NR	2E-9		0.0145	[0.0098-0.0192] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
819	chr7	30728451	30728452	rs917195	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	7p14.3	NR	rs917195-C	0.7691	3E-17		0.0467	[0.036-0.057] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
819	chr7	30728451	30728452	rs917195	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	7p14.3	NR	rs917195-C	0.7224	1E-20		0.0424	[0.033-0.051] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
819	chr7	30728451	30728452	rs917195	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	7p14.3	CRHR2	rs917195-C	0.77	4E-11		1.05	[1.04-1.07]	Affymetrix, Illumina [~ 27000000] (imputed)	N
819	chr7	30728451	30728452	rs917195	28566273	Scott RA	2017-05-31	Diabetes	An Expanded Genome-Wide Association Study of Type 2 Diabetes in Europeans.	Type 2 diabetes	up to 26,676 European ancestry cases, up to 132,532 European ancestry controls	up to 12,543 European ancestry cases, up to 66,458 European ancestry controls	7p14.3	NR	rs917195-C	0.7651	7E-6		1.0752687	[1.04-1.11]	Affymetrix, Illumina [at least 11579618] (imputed)	N
819	chr7	30755582	30755583	rs10267836	25524916	Palmer ND	2014-12-18	Diabetes	Genetic Variants Associated With Quantitative Glucose Homeostasis Traits Translate to Type 2 Diabetes in Mexican Americans: The GUARDIAN (Genetics Underlying Diabetes in Hispanics) Consortium.	Glucose homeostasis traits	up to 4,176 Mexican American individuals	NA	7p14.3	INMT	rs10267836-?		6E-6	(DI)	3.2	[1.44-4.96] unit increase	Illumina [693128]	N
820	chr7	30879916	30879917	rs138263661	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		INMT-MINDY4	rs138263661-?	NR	4E-10	(female)	0.668107	[NR] unit increase	Affymetrix [NR] (imputed)	N
820	chr7	30882321	30882322	rs80326231	33831438	Williams JE	2021-04-05	Genomics	Key genetic variants associated with variation of milk oligosaccharides from diverse human populations.	Human milk oligosaccharide concentration (lacto-N-fucopentaose III) in non-secretors	90 European, Sub-Saharan African, Hispanic or unknown ancestry individuals	NA	7p14.3		rs80326231-?	NR	4E-9				Illumina [1128286]	N
820	chr7	30886499	30886500	rs7791980	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (90 or 130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	7p14.3	FAM188B	rs7791980-?	NR	8E-6		0.173	[0.083-0.263] unit decrease	Illumina [at least 13000000] (imputed)	N
820	chr7	30915262	30915263	rs10216063	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	7p14.3	INMT-MINDY4, MINDY4	rs10216063-A	0.8274	4E-10		0.2386	[0.16-0.31] mmHg decrease	Affymetrix [NR] (imputed)	N
820	chr7	30915477	30915478	rs12669187	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	7p14.3	INMT-MINDY4	rs12669187-A	0.1351	1E-8		0.0324	[0.021-0.044] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
820	chr7	30916429	30916430	rs12666466	31729369	Howles SA	2019-11-15	Nat Commun	Genetic variants of calcium and vitamin D metabolism in kidney stone disease.	Kidney stones	6,536 British ancestry cases, 5,587 Japanese ancestry cases, 388,508 British ancestry controls, 28,870 Japanese ancestry controls	NA	7p14.3	AQP1	rs12666466-G	0.03	3E-8		1.19	[1.12-1.26]	Affymetrix, Illumina [~ 5000000] (imputed)	N
820	chr7	30917116	30917117	rs73301967	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Urolithiasis	6,638 Japanese ancestry cases, 205,815 Japanese ancestry controls	NA	7p14.3		rs73301967-A	0.119410425	1E-8		1.173867	[1.11052188-1.240825373]	Illumina [8919992] (imputed)	N
820	chr7	30917830	30917831	rs6975977	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Urolithiasis	6,223 European ancestry cases, 482,123 European ancestry controls, 11,699 East Asian ancestry cases, 167,027 East Asian ancestry controls	NA	7p14.3		rs6975977-A	NR	1E-14		0.1512	[0.11-0.19] unit increase	Affymetrix, Illumina [25845211] (imputed)	N
820	chr7	30917830	30917831	rs6975977	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Urolithiasis	11,699 East Asian ancestry cases, 167,027 East Asian ancestry controls	NA	7p14.3		rs6975977-A	0.12676808	2E-13		0.16063847	[0.12-0.2] unit increase	Illumina [13429980] (imputed)	N
820	chr7	30917830	30917831	rs6975977	30975718	Tanikawa C	2019-04-11	J Am Soc Nephrol	Novel Risk Loci Identified in a Genome-Wide Association Study of Urolithiasis in a Japanese Population.	Urolithiasis	11,130 Japanese ancestry cases, 187,639 Japanese ancestry controls	2,289 Japanese ancestry cases, 3,817 Japanese ancestry controls	7p14.3	INMT, FAM188B	rs6975977-A	0.131	5E-10		1.1363636	[NR]	Illumina [6603247] (imputed)	N
820	chr7	30922568	30922569	rs61744238	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	7p14.3	NR	rs61744238-?	NR	4E-6		10644.65	NR unit decrease	Illumina [2379855]	N
821	chr7	30933452	30933453	rs10233127	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	7p14.3	AQP1	rs10233127-A	0.1092	1E-13		0.3025	[0.22-0.38] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
821	chr7	30935738	30935739	rs12666237	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	7p14.3		rs12666237-T	NR	3E-11		0.0202	[0.014-0.026] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
821	chr7	30935747	30935748	rs1465216	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	7p14.3	AQP1	rs1465216-C	NR	2E-8		0.0237139	[0.015-0.032] unit increase	Affymetrix [319769] (imputed)	N
821	chr7	30935747	30935748	rs1465216	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	7p14.3	AQP1	rs1465216-C	NR	2E-8		0.0239753	[0.016-0.032] unit increase	Affymetrix [319769] (imputed)	N
821	chr7	30935899	30935900	rs12112380	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	7p14.3		rs12112380-?	NR	2E-8				NR [~ 8900000] (imputed)	N
821	chr7	30936023	30936024	rs12112389	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	7p14.3	AQP1	rs12112389-C	NR	4E-9		0.0389863	[0.026-0.052] unit increase	Affymetrix [319769] (imputed)	N
821	chr7	30936023	30936024	rs12112389	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	7p14.3	AQP1	rs12112389-C	NR	3E-9		0.039338	[0.026-0.052] unit increase	Affymetrix [319769] (imputed)	N
821	chr7	30937177	30937178	rs1000597	22396660	Urabe Y	2012-03-01	PLoS Genet	A genome-wide association study of nephrolithiasis in the Japanese population identifies novel susceptible Loci at 5q35.3, 7p14.3, and 13q14.1.	Nephrolithiasis	904 Japanese ancestry cases, 7,471 Japanese ancestry controls	4,892 Japanese ancestry cases, 9,873 Japanese ancestry controls	7p14.3	INMT, FAM188B, AQP1	rs1000597-?	NR	2E-14		1.22	[1.16-1.29]	Illumina [556249]	N
821	chr7	30941254	30941255	rs4720024	28642124	Hensman Moss DJ	2017-06-20	Lancet Neurol	Identification of genetic variants associated with Huntington's disease progression: a genome-wide association study.	Huntington's disease progression	1,989 European and unknown ancestry mutation carriers	NA	7p14.3	AQP1, FAM188B, INMT-FAM188B	rs4720024-?	NR	5E-6				Illumina [9650000] (imputed)	N
821	chr7	30954977	30954978	rs5883264	34014839	Page GP	2021-05-20	J Clin Invest	Multi-ancestry genome-wide association study identifies 27 loci associated with measures of hemolysis following blood storage.	hemolysis of donated blood (osmotic)	Up to 7,586 non-Hispanic White ancestry individuals, Up to 1,049 East Asian ancestry individuals, Up to 257 South Asian ancestry individuals, Up to 1,046 African Americans individuals, Up to 456 Mexican and Central American Hispanics individuals, Up to 489 Caribbean Island Hispanics, Up to 1,336 individuals	NA	7p14.3	AQP1	rs5883264-?	NR	4E-10		1.3	NR unit decrease	NR [14100000] (imputed)	N
821	chr7	30954977	30954978	rs5883264	34014839	Page GP	2021-05-20	J Clin Invest	Multi-ancestry genome-wide association study identifies 27 loci associated with measures of hemolysis following blood storage.	hemolysis of donated blood (osmotic)	Up to 7,586 non-Hispanic White ancestry individuals	NA	7p14.3	AQP1	rs5883264-?	NR	5E-8				NR [14100000] (imputed)	N
821	chr7	30955538	30955539	rs28362709	33097703	Surakka I	2020-10-23	Nat Commun	MEPE loss-of-function variant associates with decreased bone mineral density and increased fracture risk.	Ultradistal forearm bone mineral density	21,907 European ancestry individuals	NA	7p14.3	NR	rs28362709-?	0.769517540931702	6E-6		0.061291367	[0.035-0.088] SD units increase	Illumina [11603265] (imputed)	N
821	chr7	30955538	30955539	rs28362709	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	7p14.3	AQP1	rs28362709-G	0.770924	2E-89		0.0436084	[0.039-0.048] unit increase	NR [13737936] (imputed)	N
821	chr7	30955538	30955539	rs28362709	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	7p14.3		rs28362709-?	NR	2E-80		0.0451269	[0.04-0.05] unit increase	Affymetrix [20259828] (imputed)	N
821	chr7	30956488	30956489	rs10276670	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Fractures	53,184 British ancestry cases, 373,611 British ancestry controls	367,900 European ancestry cases, 363,919 European ancestry controls	7p14.3	AQP1	rs10276670-A	0.7724	3E-55		0.0559	[0.049-0.063] unit decrease	NR [13977204] (imputed)	N
821	chr7	30956488	30956489	rs10276670	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7p14.3		rs10276670-?	NR	1E-14				NR [~ 8900000] (imputed)	N
821	chr7	30956488	30956489	rs10276670	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	7p14.3		rs10276670-?	NR	7E-79				NR [~ 8900000] (imputed)	N
821	chr7	30956488	30956489	rs10276670	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	7p14.3		rs10276670-?	NR	7E-79		0.044218	[0.039-0.049] unit increase	Affymetrix [20259828] (imputed)	N
821	chr7	30956488	30956489	rs10276670	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	7p14.3	AQP1	rs10276670-A	0.766462	3E-21	(women)	0.0501053	[0.04-0.061] unit increase	NR [17166351] (imputed)	N
821	chr7	30956488	30956489	rs10276670	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	7p14.3	AQP1	rs10276670-A	0.766101	2E-34		0.047132	[0.039-0.055] unit increase	NR [17166351] (imputed)	N
821	chr7	30956488	30956489	rs10276670	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	7p14.3	AQP1	rs10276670-A	0.765688	4E-15	(men)	0.0452602	[0.034-0.057] unit increase	NR [17166351] (imputed)	N
821	chr7	30957701	30957702	rs28362721	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	7p14.3	AQP1	rs28362721-T	0.1793	1E-12	(European)	0.0611	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
821	chr7	30957701	30957702	rs28362721	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	7p14.3	AQP1	rs28362721-T	0.1773	7E-14		0.0591	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
821	chr7	30975049	30975050	rs76529322	34074324	Wan JY	2021-06-01	Diabetol Metab Syndr	Genome-wide association analysis of metabolic syndrome quantitative traits in the GENNID multiethnic family study.	Triglyceride levels	281 African American individuals from 73 families, 516 European ancestry individuals from 75 families, 125 Japanese American individuals from 15 families, 598 Mexican American individuals from 96 families	NA	7p14.3	AQP1, GHRHR	rs76529322-T	0.03	8E-7	(African American)	0.73	[0.44-1.02] unit increase	Illumina [up to 13042663] (imputed)	N
821	chr7	31013503	31013504	rs4723038	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	7p14.3	NR	rs4723038-?	NR	3E-41				Affymetrix [NR]	N
821	chr7	31018851	31018852	rs2228078	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	7p14.3	NR	rs2228078-C	NR	2E-9		0.0584	[0.039-0.077] unit increase	Affymetrix [9000000] (imputed)	N
821	chr7	31035142	31035143	rs10280233	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	7p14.3		rs10280233-T	NR	3E-8		0.0213	[0.014-0.029] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
821	chr7	31035815	31035816	rs141373024	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7p14.3	NR	rs141373024-A	0.01045	8E-9	(PLEC)	0.1159	NR unit increase	Illumina [1671387] (imputed)	N
821	chr7	31057566	31057567	rs733317	28468790	Agopian AJ	2017-06-01	Circ Cardiovasc Genet	Genome-Wide Association Studies and Meta-Analyses for Congenital Heart Defects.	Left ventricular obstructive tract defect (inherited effect)	247 European ancestry trios, 70 non-European ancestry trios, 192 European and other ancestry trios	NA	7p14.3	intergenic	rs733317-?	NR	7E-6		1.642646	[1.322779-2.039862]	Illumina [at least 4483243] (imputed)	N
821	chr7	31060349	31060349	rs1218667320	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7p14.3	NR	rs1218667320-T	0.01045	3E-12	(MT2A)	0.8895	NR unit increase	Illumina [1671387] (imputed)	N
822	chr7	31085161	31085162	rs17159861	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (genus Eubacterium coprostanoligenes group id.11375)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	7p14.3		rs17159861-C	NR	1E-8		5.7244205	z score increase	Affymetrix, Illumina [NR] (imputed)	N
822	chr7	31111616	31111617	rs6968349	30705256	Koshimizu H	2019-01-31	Transl Psychiatry	Genome-wide association study identifies a novel locus associated with psychological distress in the Japanese population.	Psychological distress	3,981 Japanese ancestry cases, 6,349 Japaneses ancestry controls	NA	7p14.3	NR	rs6968349-G	0.3156	8E-6		1.2277	[1.14-1.32]	Illumina [8567708] (imputed)	N
822	chr7	31116167	31116168	rs12668955	27957625	Bacchelli E	2016-12-13	J Headache Pain	A genome-wide analysis in cluster headache points to neprilysin and PACAP receptor gene variants.	Cluster headache	99 Italian ancestry cases, 359 Italian ancestry smoker controls		7p14.3	ADCYAP1R1	rs12668955-A	0.48	9E-6		2.08	[1.52-2.94]	Illumina [290505]	N
822	chr7	31136896	31136897	rs2267739	25147783	Keene KL	2014-08-06	Front Public Health	Genetic Associations with Plasma B12, B6, and Folate Levels in an Ischemic Stroke Population from the Vitamin Intervention for Stroke Prevention (VISP) Trial.	Vitamin B levels in ischemic stroke	1,725 European ancestry cases, 258 African ancestry cases, 117 cases	NA	7p14.3	ADCYAP1R1	rs2267739-G	0.153	1E-6	(Vitamin B6)	0.241	[NR] unit decrease	Illumina [737081]	N
822	chr7	31140138	31140139	rs73688764	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	7p14.3	NR	rs73688764-?	NR	2E-8				Illumina [7760689] (imputed)	N
822	chr7	31148278	31148279	rs1541518	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Reading ability (multivariate)	up to 3,468 European ancestry individuals	NA	7p14.3	NR	rs1541518-?		4E-7				Illumina [up to 6969139] (imputed)	N
822	chr7	31148278	31148279	rs1541518	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Non-word reading	3,409 European ancestry individuals	NA	7p14.3	ADCYAP1R1	rs1541518-G	0.70708	6E-8		0.177328	[0.11-0.24] unit decrease	Illumina [6969139] (imputed)	N
822	chr7	31155346	31155347	rs1558477	21621269	Aragam N	2011-05-26	J Affect Disord	Genome-wide association analysis of gender differences in major depressive disorder in the Netherlands NESDA and NTR population-based samples.	Major depressive disorder	1,726 cases, 1,630 controls	NA	7p14.3	ADCYAP1R1	rs1558477-?		3E-7				Perlegen [433556]	N
822	chr7	31163002	31163003	rs7801342	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD127 on CD8+ T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	7p14.3		rs7801342-C	0.23405	2E-9		0.1834	[0.12-0.24] unit increase	Illumina [17954496] (imputed)	N
822	chr7	31163195	31163196	rs58094779	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Word reading	3,468 European ancestry individuals	NA	7p14.3	AC006466.5	rs58094779-C	0.722717143	4E-6		0.169282	unit decrease	Illumina [6969139] (imputed)	N
822	chr7	31183225	31183226	rs62446997	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Phoneme awareness	3,093 European ancestry individuals	NA	7p14.3	Intergenic	rs62446997-G	0.84391	7E-6		0.182342	[0.1-0.26] unit decrease	Illumina [6969139] (imputed)	N
823	chr7	31199266	31199267	rs2041570	29787419	Hrdlickova B	2018-05-21	Eur J Gastroenterol Hepatol	A locus at 7p14.3 predisposes to refractory celiac disease progression from celiac disease.	Refractory celiac disease type II	38 Dutch ancestry cases, 846 Dutch ancestry controls	56 European ancestry cases, 1,285 European ancestry controls	7p14.3	NR	rs2041570-A	0.41	2E-8		2.36	[1.73-3.21]	Illumina [499626]	N
823	chr7	31242469	31242470	rs17159991	21294900	Charles BA	2011-02-04	BMC Med Genomics	A genome-wide association study of serum uric acid in African Americans.	Uric acid levels	1,017 African American individuals	NA	7p14.3	AC006978.1	rs17159991-A	0.05	8E-6		0.329	[0.19-0.47] unit decrease	Affymetrix [2366856] (imputed)	N
823	chr7	31302390	31302391	rs138090874	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	7p14.3	Intergenic	rs138090874-A	NR	4E-8	(between families)	5.511	unit increase	Affymetrix [up to 15107142] (imputed)	N
824	chr7	31330784	31330785	rs35851551	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	7p14.3		rs35851551-A	0.899	9E-13		0.016	[0.012-0.02] unit decrease	NR [NR] (imputed)	N
824	chr7	31330784	31330785	rs35851551	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	7p14.3	NEUROD6	rs35851551-A	0.898272	3E-13		0.0246875	[0.018-0.031] unit increase	NR [16516521] (imputed)	N
824	chr7	31330784	31330785	rs35851551	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	7p14.3	NR	rs35851551-G	0.0967	9E-11		0.0120461	[0.0084-0.0157] unit increase	NR [9732723] (imputed)	N
824	chr7	31341486	31341487	rs17393539	29953918	Deng C	2018-06-25	Gene	Identification of three novel loci of ALDH2 Gene for Serum Folate levels in a Male Chinese Population by Genome-Wide Association Study.	Serum folate levels	1,999 Han Chinese ancestry individuals	NA	7p14.3	NEUROD6	rs17393539-?	NR	2E-7				Illumina [1940243] (imputed)	N
824	chr7	31344764	31344765	rs1917008	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	7p14.3		rs1917008-?	NR	3E-8				NR [~ 8900000] (imputed)	N
824	chr7	31363250	31363251	rs6945749	25378659	Lemaitre RN	2014-11-06	J Lipid Res	Genetic loci associated with circulating levels of very long-chain saturated fatty acids.	Very long-chain saturated fatty acid levels (fatty acid 22:0)	10,129 European ancestry individuals	NA		NEUROD6	rs6945749-C	NR	5E-6		4.554	[NR] Z score decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
824	chr7	31434692	31434693	rs58499557	30279459	van der Meer D	2018-10-02	Mol Psychiatry	Brain scans from 21,297 individuals reveal the genetic architecture of hippocampal subfield volumes.	Hippocampal tail volume	21,297 European ancestry individuals	NA	7p14.3		rs58499557-T	NR	3E-12		12.53	NR mm3 decrease	Affymetrix, Illumina [NR] (imputed)	N
824	chr7	31446100	31446101	rs62449208	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	7p14.3	ACKR3	rs62449208-?		2E-8				NR [7428630] (imputed)	N
826	chr7	31623745	31623746	rs1014137	24578207	Opherk C	2014-02-27	Stroke	Genome-wide genotyping demonstrates a polygenic risk score associated with white matter hyperintensity volume in CADASIL.	White matter hyperintensity volume in cerebral autosomal-dominant arteriopathy with subcortical infarcts and leukoencephalopathy	466 European ancestry individuals	NA	7p14.3	NR	rs1014137-C	NR	8E-6		0.0241	[NR] unit increase	Affymetrix [583499]	N
826	chr7	31682452	31682453	rs4141001	25854761	Zuo X	2015-04-09	Nat Commun	Whole-exome SNP array identifies 15 new susceptibility loci for psoriasis.	Psoriasis	11,245 Han Chinese ancestry cases, 11,177 Han Chinese ancestry controls	6,369 Han Chinese ancestry cases, 13,969 Han Chinese ancestry controls	7p14.3	CCDC129	rs4141001-?		2E-11		1.1627907	[1.12-1.23]	Illumina [87827]	N
827	chr7	31728179	31728180	rs12666349	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	Intrinsic epigenetic age acceleration	34,461 European ancestry individuals, 6,148 African American individuals	NA	7p14.3	NR	rs12666349-?	NR	3E-10				Affymetrix, Illumina [6211246] (imputed)	N
827	chr7	31728179	31728180	rs12666349	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	Intrinsic epigenetic age acceleration	34,461 European ancestry individuals	NA	7p14.3	NR	rs12666349-C	0.1972	5E-9		0.2548	[0.17-0.34] unit decrease	Affymetrix, Illumina [7567980] (imputed)	N
827	chr7	31735262	31735263	rs34173	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Aspartate aminotransferase levels in low alcohol consumption	8,716 individuals	NA	7p14.3	NR	rs34173-?	NR	3E-7		0.041	[0.026-0.056] unit decrease	Illumina [~ 7800000] (imputed)	N
827	chr7	31741663	31741664	rs34180	29855537	Hirata T	2018-05-31	Sci Rep	Japanese GWAS identifies variants for bust-size, dysmenorrhea, and menstrual fever that are eQTLs for relevant protein-coding or long non-coding RNAs.	Menstruation quality of life impact (acne)	1,115 Japanese ancestry female cases, 4,619 Japanese ancestry female controls	1,204 Japanese ancestry female cases, 4,410 Japanese ancestry female controls	7p14.3	NR	rs34180-A	0.704857903	9E-6		0.16777869	[0.094-0.242] unit increase	Affymetrix [536506]	N
827	chr7	31784754	31784755	rs116832992	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Gynecologic disease (multivariate analysis)	up to 7,975 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	7p14.3	PDE1C	rs116832992-?		3E-9	(endometriosis, uterine cervical cancer)			Illumina [7645193] (imputed)	N
827	chr7	31784754	31784755	rs116832992	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Endometriosis (MTAG)	645 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	7p14.3	Intergenic	rs116832992-?		9E-6		1.06	[1.03-1.09]	Illumina [7645193] (imputed)	N
827	chr7	31814019	31814020	rs10225046	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	7p14.3	PDE1C	rs10225046-G	0.47724103749527	9E-7	(G_Aestuariispira_HB)	0.298541	[0.18-0.42] unit increase	Illumina [7711310] (imputed)	N
828	chr7	31904026	31904027	rs2270221	23472165	Albertsen HM	2013-03-05	PLoS One	Genome-wide association study link novel loci to endometriosis.	Endometriosis	1,514 European ancestry cases, 12,660 European ancestry controls	505 European ancestry cases, 1,811 European ancestry controls	7p14.3	PDE1C	rs2270221-A	0.267	1E-6		1.2	[NR]	Illumina [580699]	N
828	chr7	31957549	31957550	rs10266620	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	7p14.3		rs10266620-?	NR	2E-13				NR [~ 8900000] (imputed)	N
829	chr7	32003222	32003223	rs7811069	34177598	Wolking S	2021-06-09	Front Pharmacol	Role of Common Genetic Variants for Drug-Resistance to Specific Anti-Seizure Medications.	Response to lamotrigine in focal epilepsy	334 European ancestry cases, 680 European ancestry controls	NA			rs7811069-?	NR	2E-6				Illumina [NR] (imputed)	N
829	chr7	32003222	32003223	rs7811069	34177598	Wolking S	2021-06-09	Front Pharmacol	Role of Common Genetic Variants for Drug-Resistance to Specific Anti-Seizure Medications.	Response to lamotrigine in epilepsy	471 European ancestry cases, 929 European ancestry controls	NA			rs7811069-?	NR	8E-7				Illumina [NR] (imputed)	N
829	chr7	32053912	32053913	rs11306161	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Sensorimotor dexterity	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	7p14.3	PDE1C	rs11306161-CA	NR	4E-6		0.14609578	[0.066-0.227] unit increase	Illumina [> 6200000] (imputed)	N
829	chr7	32101296	32101297	rs77387054	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7p14.3	NR	rs77387054-A	0.08885	2E-8	(PPA1)	0.0695	NR unit increase	Illumina [1671387] (imputed)	N
830	chr7	32159119	32159120	rs117283290	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Deep white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	7p14.3	intergenic	rs117283290-T	0.0061	8E-6		0.2662	[0.15-0.38] unit increase	Affymetrix, Illumina [NR] (imputed)	N
830	chr7	32189539	32189540	rs11975235	23509613	Kamboh MI	2013-02-24	Autoimmune Dis	Genome-wide association study of antiphospholipid antibodies.	Presence of antiphospholipid antibodies	183 European ancestry ACL-positive cases, 487 European ancestry ACL-negative controls, 127 European ancestry LAC-positive cases, 581 European ancestry LAC-negative controls, 136 European ancestry Anti-B2GPI-positive cases, 360 European ancestry Anti-B2GPI-negative controls	NA	7p14.3	PDE1C	rs11975235-?	0.4843	3E-6	(anti-B2 GPI)	2.139	[NR]	Affymetrix [906600]	N
830	chr7	32211432	32211433	rs9648380	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	7p14.3	PDE1C	rs9648380-A	NR	4E-8		0.016390888	[0.011-0.022] unit increase	Affymetrix [NR]	N
830	chr7	32214191	32214192	rs10249533	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	7p14.3	PDE1C	rs10249533-T	0.0611855786469311	2E-7	(G_Dialister_HB)	0.566201	[0.35-0.78] unit decrease	Illumina [7711310] (imputed)	N
830	chr7	32216892	32216893	rs10239506	22179738	Lai HM	2011-12-16	Rheumatology (Oxford)	Gout and type 2 diabetes have a mutual inter-dependent effect on genetic risk factors and higher incidences.	Gout	20 Han Chinese ancestry male gout cases, 42 Han Chinese ancestry male controls	NA	7p14.3	PDE1C	rs10239506-?		1E-7				Illumina [479403]	N
831	chr7	32247036	32247037	rs78560602	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin I concentration	1,606 African American individuals	NA	7p14.3		rs78560602-?	NR	3E-6		0.53	[0.31-0.75] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
831	chr7	32261457	32261458	rs17161045	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	7p14.3		rs17161045-?	NR	2E-10				NR [~ 8900000] (imputed)	N
831	chr7	32262376	32262377	rs12669911	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	7p14.3	PDE1C	rs12669911-A	0.385968	1E-8		0.0117366	[0.0077-0.0158] unit increase	Affymetrix [NR] (imputed)	N
831	chr7	32265006	32265007	rs10233473	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	7p14.3	PDE1C	rs10233473-C	0.748242	4E-9		0.0142156	[0.0095-0.0189] unit increase	NR [16516521] (imputed)	N
831	chr7	32265544	32265545	rs10951325	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	7p14.3	PDE1C	rs10951325-T	0.6319	8E-20		1.0328		Affymetrix [11880941] (imputed)	N
831	chr7	32265544	32265545	rs10951325	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	7p14.3	PDE1C	rs10951325-T	0.6319	8E-20		1.0341709		Affymetrix [11880941] (imputed)	N
831	chr7	32265724	32265725	rs10237329	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	7p14.3		rs10237329-C	0.371	2E-10		0.008	[0.006-0.01] unit increase	NR [NR] (imputed)	N
831	chr7	32273106	32273107	rs7806224	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking behaviour (cigarettes smoked per day)	up to 153,918 European ancestry individuals	NA	7p14.3	PDE1C	rs7806224-C	0.371	1E-10		0.0244	[0.017-0.032] unit increase	Illumina [~ 250000] (imputed)	N
831	chr7	32273106	32273107	rs7806224	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking behaviour (cigarette pack-years)	up to 150,993 European ancestry individuals	NA	7p14.3	PDE1C	rs7806224-C	0.375	3E-16		0.0287	[0.022-0.036] unit increase	Illumina [~ 250000] (imputed)	N
831	chr7	32287774	32287775	rs12701204	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	7p14.3	NR	rs12701204-?	NR	1E-6				Affymetrix [NR]	N
831	chr7	32290564	32290565	rs17161076	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	7p14.3	LOC100130673, LSM5, AVL9, DPY19L1P1, ZNRF2P1, MIR550A2, MIR550B2	rs17161076-A	0.780157788540475	3E-8		0.020067153	unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
831	chr7	32291760	32291761	rs10236197	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	7p14.3		rs10236197-T	0.6303	2E-10		0.014	[0.01-0.018] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
831	chr7	32291760	32291761	rs10236197	29520040	Coleman JRI	2018-03-08	Mol Psychiatry	Biological annotation of genetic loci associated with intelligence in a meta-analysis of 87,740 individuals.	Extremely high intelligence	1,247 European ancestry cases, 86,493 European ancestry controls	NA	7p14.3	PDE1C	rs10236197-T	0.654	2E-9		6.03	NR z score increase increase	Illumina [up to 12595966] (imputed)	N
831	chr7	32291760	32291761	rs10236197	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	7p14.3	PDE1C	rs10236197-T	NR	9E-10		0.018434485	[0.013-0.024] unit increase	Affymetrix [NR]	N
831	chr7	32291760	32291761	rs10236197	28530673	Sniekers S	2017-05-22	Nat Genet	Genome-wide association meta-analysis of 78,308 individuals identifies new loci and genes influencing human intelligence.	Intelligence	up to 58,799 European ancestry adults, up to 19,509 European ancestry children	NA	7p14.3	PDE1C, LOC100130673	rs10236197-T	0.63	4E-8	(Adults)	5.505	z score increase	Affymetrix, Illumina [12104294] (imputed)	N
831	chr7	32291760	32291761	rs10236197	28530673	Sniekers S	2017-05-22	Nat Genet	Genome-wide association meta-analysis of 78,308 individuals identifies new loci and genes influencing human intelligence.	Intelligence	up to 58,799 European ancestry adults, up to 19,509 European ancestry children	NA	7p14.3	PDE1C, LOC100130673	rs10236197-T	0.63	1E-10		6.463	z score increase	Affymetrix, Illumina [12104294] (imputed)	N
831	chr7	32291773	32291774	rs4720058	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	7p14.3	Intergenic	rs4720058-A	0.3689	2E-12	(MTAG)	0.0167	[0.012-0.021] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
831	chr7	32292960	32292961	rs7798739	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	7p14.3	Intergenic	rs7798739-A	0.3667	1E-8	(MTAG)	0.0106	[0.0069-0.0143] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
831	chr7	32292960	32292961	rs7798739	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	7p14.3	Intergenic	rs7798739-A	0.3664	2E-10	(MTAG)	0.0109	[0.0076-0.0142] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
831	chr7	32300375	32300376	rs112545952	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Neuroticism	170,911 European ancestry individuals	NA	7p14.3	NR	rs112545952-A	0.135	8E-6		0.023067474	[0.013-0.033] unit increase	Affymetrix [up to 6544775] (imputed)	N
831	chr7	32314689	32314690	rs7778443	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking cessation (MTAG)	up to 820,192 European ancestry individuals	NA	7p14.3	NR	rs7778443-C	0.618	7E-17		0.0131575	[0.01-0.016] unit decrease	NR [9732723] (imputed)	N
831	chr7	32314689	32314690	rs7778443	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking cessation	up to 547,219 European ancestry individuals	NA	7p14.3	NR	rs7778443-C	0.618	1E-8		0.022999045	[0.015-0.031] unit decrease	NR [~ 10000000] (imputed)	N
831	chr7	32315612	32315613	rs10226228	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	7p14.3		rs10226228-A	0.63	2E-15		0.016	[0.012-0.02] unit decrease	Affymetrix [up to 90000000] (imputed)	N
831	chr7	32322495	32322496	rs9771228	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	7p14.3		rs9771228-T	0.6491	6E-11		0.0096	[0.0067-0.0125] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
831	chr7	32322495	32322496	rs9771228	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	7p14.3	Intergenic	rs9771228-T	0.6491	9E-13	(MTAG)	0.0098	[0.0071-0.0125] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
831	chr7	32322495	32322496	rs9771228	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	7p14.3	NR	rs9771228-?	NR	5E-6		4.585	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
831	chr7	32322495	32322496	rs9771228	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability	107,207 European ancestry individuals	NA	7p14.3	PDE1C	rs9771228-?	NR	2E-10		6.332	z score increase	Affymetrix, Illumina [7357080] (imputed)	N
831	chr7	32322495	32322496	rs9771228	27046643	Davies G	2016-04-05	Mol Psychiatry	Genome-wide association study of cognitive functions and educational attainment in UK Biobank (N=112 151).	Verbal-numerical reasoning	36,035 European ancestry individuals	NA	7p14.3	PDE1C	rs9771228-?	NR	4E-8		0.0427273	[NR] unit decrease	Affymetrix [~ 17300000] (imputed)	N
831	chr7	32330128	32330129	rs215599	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking cessation	450,129 European ancestry individuals	NA	7p14.3	PDE1C	rs215599-T		4E-8		0.974	[NR]	Affymetrix [up to 79000000] (imputed)	N
831	chr7	32333641	32333642	rs215600	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking behaviour (cigarettes smoked per day)	up to 377,334 European ancestry individuals	NA	7p14.3	NR	rs215600-A	0.645	4E-21		0.024002468	[0.019-0.029] unit decrease	NR [~ 10000000] (imputed)	N
831	chr7	32333641	32333642	rs215600	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Cigarettes smoked per day (MTAG)	up to 403,928 European ancestry individuals	NA	7p14.3	NR	rs215600-A	0.645	8E-27		0.0243837	[0.02-0.029] unit decrease	NR [9732723] (imputed)	N
831	chr7	32333641	32333642	rs215600	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability (MTAG)	436,124 European ancestry individuals	NA	7p14.3	PDE1C	rs215600-?	NR	3E-12		6.999	z score increase	Affymetrix, Illumina, Perlegen [7333576] (imputed)	N
831	chr7	32333641	32333642	rs215600	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability	107,207 European ancestry individuals	NA	7p14.3	PDE1C	rs215600-?	NR	3E-10		6.289	z score increase	Affymetrix, Illumina [7357080] (imputed)	N
831	chr7	32333920	32333921	rs215601	33287642	Said MA	2020-12-08	J Am Heart Assoc	Associations of Observational and Genetically Determined Caffeine Intake With Coronary Artery Disease and Diabetes Mellitus.	Caffeine consumption from coffee or tea	362,316 European ancestry individuals	NA	7p14.3	PDE1C	rs215601-A	0.372618	6E-10		0.01488	[0.01-0.02] unit increase	Affymetrix [19400838] (imputed)	N
831	chr7	32334879	32334880	rs215603	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	7p14.3	NR	rs215603-C	0.354871	2E-8		0.036962833	[0.024-0.05] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
831	chr7	32334879	32334880	rs215603	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	7p14.3	Intergenic	rs215603-T	0.6189	1E-8		0.0166	[0.011-0.022] unit increase	Affymetrix, Illumina [10100000] (imputed)	N
831	chr7	32338336	32338337	rs215607	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	7p14.3	NA	rs215607-A	0.7786	6E-15		0.0163	[0.012-0.02] unit decrease	NR [~ 27400000] (imputed)	N
831	chr7	32338336	32338337	rs215607	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	7p14.3	NR	rs215607-G	NR	2E-10		0.024	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
831	chr7	32342617	32342618	rs11771526	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	7p14.3	LOC100130673	rs11771526-G	0.119	8E-6		0.027	[0.015-0.039] kg/m2 increase	Affymetrix, Illumina [2550021]	N
831	chr7	32345282	32345283	rs7779181	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	7p14.3	PDE1C, LOC100130673	rs7779181-C	0.2	3E-8		0.017	[0.011-0.023] unit increase	Illumina [6108953] (imputed)	N
831	chr7	32347334	32347335	rs215614	34187846	Ong JS	2021-06-29	Gut	Multitrait genetic association analysis identifies 50 new risk loci for gastro-oesophageal reflux, seven new loci for Barrett's oesophagus and provides insights into clinical heterogeneity in reflux diagnosis.	Gastroesophageal reflux disease	129,080 European ancestry cases, 473,524 European ancestry controls	462,753 cases, 1,127,474 controls	7p14.3	PDE1C	rs215614-G	0.37	4E-11		0.033	unit increase	NR [2324712] (imputed)	N
831	chr7	32347334	32347335	rs215614	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	7p14.3	NR	rs215614-?	NR	8E-14				Affymetrix [~ 8270000] (imputed)	N
831	chr7	32347334	32347335	rs215614	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	7p14.3	NA	rs215614-A	0.6246	3E-16		0.0144	[0.011-0.018] unit decrease	NR [~ 27400000] (imputed)	N
831	chr7	32347334	32347335	rs215614	20418888	Thorgeirsson TE	2010-04-25	Nat Genet	Sequence variants at CHRNB3-CHRNA6 and CYP2A6 affect smoking behavior.	Smoking behavior	31,266 European ancestry individuals	54,731 European ancestry individuals	7p14.3	intergenic	rs215614-G	0.36	2E-7		0.22	[0.14-0.30] CPD increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
831	chr7	32360095	32360096	rs215628	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	7p14.3	NR	rs215628-C	0.3866	6E-10		0.015755115	[0.011-0.021] unit increase	Affymetrix [10549349] (imputed)	N
831	chr7	32368523	32368524	rs215632	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	7p14.3		rs215632-?	NR	1E-8				NR [~ 8900000] (imputed)	N
831	chr7	32369147	32369148	rs215634	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		7p14.3	PDE1C	rs215634-A	0.388097	1E-13		0.0104342	[0.0077-0.0132] unit increase	Affymetrix [12370749]	N
831	chr7	32369147	32369148	rs215634	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	7p14.3	PDE1C	rs215634-A	0.38727	2E-8		0.052579995	[0.034-0.071] unit increase	Affymetrix [7288503] (imputed)	N
831	chr7	32369147	32369148	rs215634	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	7p14.3		rs215634-?	NR	3E-16				NR [~ 8900000] (imputed)	N
831	chr7	32372084	32372085	rs73089969	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7p14.3	NR	rs73089969-T	0.02439	3E-8	(GNMT)	0.8816	NR unit increase	Illumina [1671387] (imputed)	N
831	chr7	32373638	32373639	rs215639	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	7p14.3	PDE1C, LSM5	rs215639-T	0.6544	2E-15		1.0287		Affymetrix [11880941] (imputed)	N
832	chr7	32376747	32376748	rs10237735	23362303	Wu JH	2013-01-29	Circ Cardiovasc Genet	Genome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortium.	Palmitic acid (16:0) levels	8,961 European ancestry individuals		7p14.3	LSM5	rs10237735-T	NR	1E-6		0.7138	unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
832	chr7	32378978	32378979	rs215669	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	7p14.3		rs215669-A	NR	6E-13		0.0142	[0.01-0.018] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
832	chr7	32378978	32378979	rs215669	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Triglycerides	429,011 European ancestry individuals	NA	7p14.3		rs215669-G	0.39	2E-6		0.01	mmol/L increase	NR [NR] (imputed)	N
832	chr7	32378978	32378979	rs215669	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	7p14.3		rs215669-G	0.39	9E-10				NR [NR] (imputed)	N
832	chr7	32378978	32378979	rs215669	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	7p14.3		rs215669-G	0.39	8E-15		0.012	% increase	NR [NR] (imputed)	N
832	chr7	32382019	32382021	rs34797959	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	7p14.3		rs34797959-C	NR	8E-12		0.0118	[0.0085-0.0151] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
832	chr7	32431245	32431246	rs7456261	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Perceived intensity of glucose	1,757 European ancestry twins	NA	7p14.3	RP11-175P8.1	rs7456261-A	0.27	7E-6		0.19	[0.11-0.27] unit increase	Illumina [4381914] (imputed)	N
832	chr7	32444434	32444435	rs215738	24556642	Zeng Z	2014-02-18	Caries Res	Genome-wide association study of primary dentition pit-and-fissure and smooth surface caries.	Smooth-surface caries	1006 European ancestry individuals	NA	7p14.3	LSM5	rs215738-A	0.0321	8E-6		3.778	[NR] unit decrease	Illumina [1216189] (imputed)	N
832	chr7	32456845	32456846	rs215747	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	7p14.3	NR	rs215747-?	NR	6E-9				Affymetrix [~ 8270000] (imputed)	N
832	chr7	32460723	32460724	rs62458065	23319000	Luykx JJ	2013-01-15	Mol Psychiatry	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA/MHPG ratio)	up to 398 European ancestry individuals	NA	7p14.3	intergenic	rs62458065-T		1E-6		0.3067	unit increase	Illumina [5767231] (imputed)	N
832	chr7	32483217	32483218	rs142283795	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	7p14.3	LSM5	rs142283795-A	0.0116493190892041	5E-6	(G_Collinsella_HB)	1.35237	[0.77-1.93] unit decrease	Illumina [7711310] (imputed)	N
832	chr7	32486979	32486980	rs1376289	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	7p14.3	ENSG00000226468	rs1376289-?	NR	8E-11		0.013688673	[0.0096-0.0178] unit decrease	NR [7306098]	N
832	chr7	32486979	32486980	rs1376289	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	7p14.3	NR	rs1376289-?	NR	7E-8		5.397	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
832	chr7	32493168	32493169	rs1580019	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	7p14.3	NR	rs1580019-A	0.333996	3E-9		0.039441753	[0.026-0.052] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
832	chr7	32493168	32493169	rs1580019	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	7p14.3	Intergenic	rs1580019-A	0.6701	9E-13	(MTAG)	0.0174	[0.013-0.022] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
832	chr7	32493168	32493169	rs1580019	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	7p14.3	Intergenic	rs1580019-A	0.6701	2E-9		0.0181	[0.012-0.024] unit increase	Affymetrix, Illumina [10100000] (imputed)	N
832	chr7	32493168	32493169	rs1580019	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	7p14.3	NR	rs1580019-A	NR	2E-8		5.652	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
832	chr7	32493168	32493169	rs1580019	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability	107,207 European ancestry individuals	NA	7p14.3	ENSG00000226468	rs1580019-?	NR	4E-9		5.875	z score increase	Affymetrix, Illumina [7357080] (imputed)	N
832	chr7	32493806	32493807	rs6949851	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	7p14.3	Intergenic	rs6949851-T	0.6731	2E-10	(MTAG)	0.0112	[0.0077-0.0147] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
832	chr7	32493806	32493807	rs6949851	29520040	Coleman JRI	2018-03-08	Mol Psychiatry	Biological annotation of genetic loci associated with intelligence in a meta-analysis of 87,740 individuals.	Extremely high intelligence	1,247 European ancestry cases, 86,493 European ancestry controls	NA	7p14.3	AVL9, LSM5	rs6949851-T	0.675	5E-8		5.45	NR z score increase increase	Illumina [up to 12595966] (imputed)	N
832	chr7	32494789	32494790	rs11765387	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	7p14.3		rs11765387-T	0.6734	9E-9		0.0086	[0.0057-0.0115] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
832	chr7	32496434	32496435	rs4580942	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	7p14.3	Intergenic	rs4580942-A	0.6766	5E-11	(MTAG)	0.0092	[0.0065-0.0119] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
833	chr7	32535201	32535202	rs56981934	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	7p14.3	Intergenic	rs56981934-C	0.6118	9E-10	(MTAG)	0.0112	[0.0077-0.0147] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
833	chr7	32599597	32599598	rs147880316	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	7p14.3		rs147880316-?	NR	1E-8				NR [~ 8900000] (imputed)	N
834	chr7	32673918	32673919	rs35432974	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	7p14.3	NR	rs35432974-?	NR	1E-6		4.859	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
834	chr7	32682772	32682773	rs188509130	30468137	Fabbri C	2018-11-23	Br J Psychiatry	Genome-wide association study of treatment-resistance in depression and meta-analysis of three independent samples.	Depressive symptom improvement	1,378 European ancestry treatment resistant cases, 934 European ancestry responders to first treatment	NA	7p14.3	DPY19L1P1	rs188509130-T	0.01	3E-6		0.34	[0.2-0.48] unit increase	Affymetrix, Illumina [7000000] (imputed)	N
834	chr7	32711987	32711988	rs184479020	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	7p14.3		rs184479020-?	NR	4E-8				NR [~ 8900000] (imputed)	N
835	chr7	32784726	32784727	rs10250729	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	7p14.3		rs10250729-C	0.219353	1E-12		0.0173516	[0.013-0.022] unit increase	Illumina [13479295] (imputed)	N
835	chr7	32784726	32784727	rs10250729	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	7p14.3	MIR550B2, LINC00997	rs10250729-?	NR	9E-12		0.023498414	[0.017-0.03] unit increase	Illumina [27896057] (imputed)	N
835	chr7	32790368	32790369	rs10951350	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	7p14.3	NR	rs10951350-?	NR	5E-6		4.555	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
835	chr7	32819355	32819356	rs73094281	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	7p14.3		rs73094281-?	NR	1E-8				NR [~ 8900000] (imputed)	N
835	chr7	32829443	32829444	rs61127279	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	7p14.3		rs61127279-?	NR	9E-10		0.0192	unit increase	NR [NR]	N
835	chr7	32848639	32848640	rs141926526	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-8 levels	3,526 Finnish ancestry individuals	NA	7p14.3	NR	rs141926526-C		3E-6		0.6149	[0.36-0.87] SD units increase	NR [10700000] (imputed)	N
835	chr7	32861229	32861230	rs17170519	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	7p14.3		rs17170519-C	0.8991	2E-8		0.0132	[0.0087-0.0177] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
835	chr7	32864499	32864500	rs34216151	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	7p14.3	AVL9, DPY19L1P2	rs34216151-A	0.31932	2E-9		0.014913371	[0.01-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
835	chr7	32873361	32873362	rs35655244	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	7p14.3	AVL9, DPY19L1P2	rs35655244-A	NR	2E-8		0.0170029	[0.011-0.023] unit decrease	Affymetrix [319769] (imputed)	N
835	chr7	32877395	32877396	rs62465348	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	7p14.3	AVL9, DPY19L1P2	rs62465348-T	NR	3E-8		0.0167064	[0.011-0.023] unit decrease	Affymetrix [319769] (imputed)	N
835	chr7	32890236	32890237	rs13229464	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	7p14.3	NR	rs13229464-T	0.3163	3E-7		0.011	[0.0069-0.0151] unit decrease	NR [~ 27400000] (imputed)	N
835	chr7	32890537	32890538	rs1823530	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	7p14.3	AVL9	rs1823530-G	NR	2E-8		0.0173691	[0.011-0.023] unit decrease	Affymetrix [321788] (imputed)	N
835	chr7	32896197	32896198	rs550249321	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	7p14.3		rs550249321-?	NR	2E-9				NR [~ 8900000] (imputed)	N
836	chr7	32907343	32907344	rs6462427	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	7p14.3		rs6462427-C	NR	1E-11		0.0139	[0.01-0.0178] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
836	chr7	32907920	32907921	rs117701289	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	7p14.3		rs117701289-G	NR	4E-18		0.0751	[0.058-0.092] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
836	chr7	32907920	32907921	rs117701289	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	7p14.3	KBTBD2	rs117701289-A	0.9901	2E-19		0.0888	[0.069-0.108] unit decrease	Affymetrix [18391927] (imputed)	N
836	chr7	32907920	32907921	rs117701289	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7p14.3		rs117701289-?	NR	1E-33				NR [~ 8900000] (imputed)	N
836	chr7	32908134	32908135	rs1045530	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p14.3	NR	rs1045530-G	0.364674	5E-20				Affymetrix, Illumina [24246363] (imputed)	N
836	chr7	32917549	32917550	rs7808664	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	7p14.3	AVL9, KBTBD2	rs7808664-A	0.37424	5E-16		0.018422738	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
836	chr7	32917549	32917550	rs7808664	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p14.3	NR	rs7808664-A	0.364912	3E-18				Affymetrix, Illumina [20825802] (imputed)	N
836	chr7	32917549	32917550	rs7808664	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	7p14.3	NR	rs7808664-A	0.375231	3E-19		0.017754	[0.014-0.022] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
836	chr7	32917549	32917550	rs7808664	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	7p14.3	Intergenic	rs7808664-G	0.6284	2E-8		0.0113	[0.0074-0.0152] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
836	chr7	32919926	32919927	rs3750082	26831199	Pattaro C	2016-01-21	Nat Commun	Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function.	Glomerular filtration rate (creatinine)	133,413 European ancestry individuals	42,166 European ancestry individuals, up to 16,471 African ancestry individuals, up to 42,296 Asian ancestry individuals	7p14.3	KBTBD2	rs3750082-A	0.34	3E-8	(EA)	0.0045	[0.0029-0.0061] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
836	chr7	32930875	32930876	rs3750081	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	7p14.3	KBTBD2	rs3750081-T	0.5931	2E-14		0.0022	[0.0016-0.0028] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
836	chr7	32935433	32935434	rs35443929	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	7p14.3	AVL9	rs35443929-A	0.374446	3E-22		0.023552135	[0.019-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
836	chr7	32936998	32936999	rs12701260	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	7p14.3	AVL9	rs12701260-T	NR	5E-8		0.0201423	[0.013-0.027] unit decrease	Affymetrix [319769] (imputed)	N
836	chr7	32936998	32936999	rs12701260	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	7p14.3	AVL9	rs12701260-T	NR	3E-8		0.0205616	[0.013-0.028] unit decrease	Affymetrix [319769] (imputed)	N
836	chr7	32941118	32941119	rs10226266	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	7p14.3		rs10226266-?	NR	2E-8				NR [~ 8900000] (imputed)	N
836	chr7	32945781	32945782	rs113931125	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	7p14.3	AVL9	rs113931125-A	NR	5E-10		0.0181378	[0.012-0.024] unit decrease	Affymetrix [319769] (imputed)	N
836	chr7	32945781	32945782	rs113931125	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	7p14.3	AVL9	rs113931125-A	NR	1E-10		0.0187743	[0.013-0.024] unit decrease	Affymetrix [319769] (imputed)	N
836	chr7	32945781	32945782	rs113931125	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	7p14.3	AVL9	rs113931125-A	0.373967	3E-18		0.02147117	[0.017-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
836	chr7	32945781	32945782	rs113931125	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	7p14.3	AVL9	rs113931125-A	0.374173	9E-15		0.0162934	[0.012-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
836	chr7	32945781	32945782	rs113931125	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	7p14.3	NR	rs113931125-A	0.376381	2E-20		0.017413	[0.014-0.021] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
836	chr7	32945781	32945782	rs113931125	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	7p14.3		rs113931125-?	NR	1E-8				NR [~ 8900000] (imputed)	N
836	chr7	32945781	32945782	rs113931125	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	7p14.3		rs113931125-?	NR	2E-18				NR [~ 8900000] (imputed)	N
836	chr7	32945819	32945820	rs74746191	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	7p14.3		rs74746191-T	NR	8E-19		0.0145	[0.011-0.018] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
836	chr7	32947200	32947201	rs56049037	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	7p14.3		rs56049037-A	0.2874	2E-12		0.017	[0.013-0.021] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
836	chr7	32947200	32947201	rs56049037	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	7p14.3		rs56049037-?	NR	5E-8				NR [~ 8900000] (imputed)	N
836	chr7	32952827	32952828	rs192277252	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	7p14.3		rs192277252-?	NR	1E-14				NR [~ 8900000] (imputed)	N
836	chr7	32953294	32953295	rs3956705	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	7p14.3	AVL9	rs3956705-T	0.3756	7E-33		0.04369549	[0.037-0.051] unit decrease	Affymetrix [~ 2500000] (imputed)	N
836	chr7	32955264	32955265	rs1376303	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	7p14.3	AVL9	rs1376303-T	NR	1E-8		0.021972634	[0.014-0.03] unit increase	Affymetrix [NR]	N
836	chr7	32962088	32962089	rs12701263	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	7p14.3	RP9P	rs12701263-C	0.600116	6E-9		0.0125711	[0.0084-0.0167] unit decrease	NR [16516521] (imputed)	N
836	chr7	32962088	32962089	rs12701263	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	7p14.3	AVL9, RP9P	rs12701263-T	NR	5E-9		0.0175261	[0.012-0.023] unit increase	Affymetrix [321788] (imputed)	N
836	chr7	32962088	32962089	rs12701263	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	7p14.3	KBTBD2, FKBP9	rs12701263-T	0.4035	2E-12		0.0121911	[0.0088-0.0156] unit decrease	Affymetrix [11880941] (imputed)	N
836	chr7	32964222	32964223	rs66709405	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	7p14.3	AVL9, RP9P	rs66709405-GA	NR	2E-8		0.0202309	[0.013-0.027] unit decrease	Affymetrix [321016] (imputed)	N
836	chr7	32966041	32966042	rs7784688	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	7p14.3	AVL9, RP9P	rs7784688-T	NR	2E-8		0.0170894	[0.011-0.023] unit decrease	Affymetrix [321788] (imputed)	N
836	chr7	32971235	32971236	rs12701265	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	7p14.3	AVL9	rs12701265-A	NR	6E-9		0.0251696	[0.017-0.034] unit decrease	Affymetrix [16832071] (imputed)	N
836	chr7	32971837	32971838	rs7788070	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	7p14.3	NR	rs7788070-?	NR	2E-7		0.009074	[0.0057-0.0125] unit decrease	Affymetrix [805426] (imputed)	N
836	chr7	32989272	32989272	rs34421297	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	7p14.3	RP9P, FKBP9	rs34421297-C	0.6074	6E-10		0.089	[0.059-0.119] unit increase	Affymetrix [~ 11900000] (imputed)	N
836	chr7	32997748	32997749	rs13437980	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	7p14.3		rs13437980-T	NR	7E-11		0.0132	[0.0093-0.0171] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
836	chr7	33009555	33009556	rs7793408	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	7p14.3	NR	rs7793408-A	0.458026	1E-10		0.01197	[0.0083-0.0156] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
836	chr7	33009555	33009556	rs7793408	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	7p14.3		rs7793408-?	NR	2E-11				NR [~ 8900000] (imputed)	N
837	chr7	33035341	33035342	rs10281146	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	7p14.3	AVL9, FKBP9	rs10281146-G	0.363262	1E-14		0.018113066	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
837	chr7	33035341	33035342	rs10281146	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	7p14.3	AVL9, FKBP9	rs10281146-G	0.363252	3E-12		0.016357215	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
837	chr7	33037892	33037893	rs2392186	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	7p14.3	AVL9, FKBP9	rs2392186-C	0.29067	4E-18		0.022445485	[0.017-0.028] unit increase	Affymetrix [93095623] (imputed)	N
837	chr7	33037892	33037893	rs2392186	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	7p14.3	AVL9, FKBP9	rs2392186-C	0.290673	1E-20		0.023412451	[0.018-0.028] unit increase	Affymetrix [93095623] (imputed)	N
837	chr7	33038813	33038814	rs370150996	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		FKBP9	rs370150996-?	NR	4E-8	(female)	0.469449	[NR] unit increase	Affymetrix [NR] (imputed)	N
837	chr7	33045509	33045510	rs142854193	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	7p14.3	FKBP9	rs142854193-T	0.0245	5E-6		0.1058	[0.06-0.151] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
837	chr7	33065101	33065102	rs17170180	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	7p14.3	FKBP9	rs17170180-?	NR	9E-6	(orotic acid)	0.18257563	[0.1-0.26] unit decrease	Affymetrix [at least 2500000] (imputed)	N
837	chr7	33081513	33081514	rs4316067	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	7p14.3	NT5C3A	rs4316067-A	0.519613	5E-48	(orotate)	0.326	[0.28-0.37] unit increase	Illumina [13039987] (imputed)	N
837	chr7	33081513	33081514	rs4316067	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	7p14.3	NT5C3A	rs4316067-G	0.297912	3E-137		0.064283796	[0.059-0.069] unit increase	Affymetrix [93095623] (imputed)	N
837	chr7	33081513	33081514	rs4316067	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	7p14.3	NT5C3A	rs4316067-G	0.297961	8E-15		0.01894347	[0.014-0.024] unit increase	Affymetrix [93095623] (imputed)	N
837	chr7	33081513	33081514	rs4316067	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	7p14.3	NT5C3A	rs4316067-G	0.298072	7E-10		0.016104104	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
837	chr7	33081513	33081514	rs4316067	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p14.3	NR	rs4316067-A	0.698431	1E-243				Affymetrix, Illumina [22063850] (imputed)	N
837	chr7	33081513	33081514	rs4316067	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	7p14.3	NR	rs4316067-A	0.702193	2E-241		0.068472	[0.064-0.073] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
837	chr7	33081513	33081514	rs4316067	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	7p14.3		rs4316067-?	NR	2E-206				NR [~ 8900000] (imputed)	N
837	chr7	33081513	33081514	rs4316067	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	7p14.3	AVL9	rs4316067-G	NR	2E-62		0.0699401	[0.061-0.078] unit increase	Affymetrix [16832071] (imputed)	N
837	chr7	33085372	33085373	rs369837642	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	7p14.3	NT5C3A	rs369837642-A	0.3182	5E-68		0.06664627	[0.059-0.074] unit increase	Affymetrix [~ 2500000] (imputed)	N
837	chr7	33085382	33085383	rs34813051	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	7p14.3		rs34813051-A	NR	9E-11		0.0143	[0.01-0.0186] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
837	chr7	33095687	33095688	rs6948759	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	7p14.3	NT5C3A	rs6948759-T	0.2116	1E-11		0.0026	[0.0018-0.0034] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
837	chr7	33102226	33102227	rs72555707	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure in major depressive disorder-negative individuals	10,701 European ancestry cases, 39,677 European ancestry controls	NA	7p14.3	NR	rs72555707-G	0.0221079	5E-6		1.124	[1.07-1.18]	Affymetrix [7791636] (imputed)	N
837	chr7	33111949	33111950	rs7802256	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	7p14.3	NR	rs7802256-T	NR	7E-11		0.0234	[0.016-0.03] unit decrease	Affymetrix [9000000] (imputed)	N
837	chr7	33111949	33111950	rs7802256	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	7p14.3	NR	rs7802256-T	NR	1E-11		0.0245	[0.017-0.032] unit increase	Affymetrix [9000000] (imputed)	N
837	chr7	33132564	33132565	rs112489173	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	7p14.3	NR	rs112489173-?	NR	1E-7		5.278	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
837	chr7	33159913	33159914	rs2392165	31557306	Wang RS	2019-09-26	Clin Pharmacol Ther	Pharmacogenomics and Placebo Response in a Randomized Clinical Trial in Asthma.	Subjective response to placebo treatment in childhood asthma (change in cough/wheeze)	250 European ancestry children	NA	7p14.3	BBS9	rs2392165-G	0.34	1E-7		0.94	NR unit increase	Illumina [NR] (imputed)	N
838	chr7	33181237	33181238	rs17169807	24556642	Zeng Z	2014-02-18	Caries Res	Genome-wide association study of primary dentition pit-and-fissure and smooth surface caries.	Smooth-surface caries	1006 European ancestry individuals	NA	7p14.3	BBS9	rs17169807-T	0.0787	4E-6		2.5493	[NR] unit decrease	Illumina [1216189] (imputed)	N
838	chr7	33194825	33194826	rs4723263	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	7p14.3	BBS9	rs4723263-G	0.566915	4E-9		0.00832963	[0.0056-0.0111] unit decrease	Affymetrix [12370749]	N
838	chr7	33251951	33251952	rs10232036	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7p14.3		rs10232036-?	NR	5E-11				NR [~ 8900000] (imputed)	N
838	chr7	33254579	33254580	rs10228486	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (min-P)	26,502 European ancestry individuals	NA	7p14.3	AL162431.1, STX6, MR1, IER5	rs10228486-?		4E-11				NR [7428630] (imputed)	N
838	chr7	33254579	33254580	rs10228486	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (min-P)	26,502 European ancestry individuals	NA	7p14.3	C2orf73	rs10228486-?		1E-10				NR [7428630] (imputed)	N
838	chr7	33256038	33256039	rs10262453	23160099	Justice CM	2012-11-18	Nat Genet	A genome-wide association study identifies susceptibility loci for nonsyndromic sagittal craniosynostosis near BMP2 and within BBS9.	Sagittal craniosynostosis	130 European ancestry trios	172 cases, 548 controls	7p14.3	BBS9	rs10262453-A	0.69	6E-20		4.17	[3.13-5.88]	Illumina [915307]	N
838	chr7	33259792	33259793	rs4723276	32266521	Justice CM	2020-04-07	Hum Genet	A genome-wide association study implicates the BMP7 locus as a risk factor for nonsyndromic metopic craniosynostosis.	Metopic nonsyndromic craniosynostosis	215 European ancestry trios	194 European ancestry cases, 333 European ancestry controls	7p14.3	BBS9	rs4723276-C	0.34	3E-8		1.72	NR	Illumina [649669]	N
838	chr7	33262189	33262190	rs9768604	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	7p14.3	BBS9	rs9768604-?		1E-10				NR [7428630] (imputed)	N
838	chr7	33262549	33262550	rs6947352	33723403	Sha Z	2021-03-15	Nat Hum Behav	The genetic architecture of structural left-right asymmetry of the human brain.	Left-right brain asymmetry	32,256 European ancestry individuals	NA	7p14.3	BBS9	rs6947352-A	0.31	4E-8				NR [9312144] (imputed)	N
838	chr7	33284294	33284295	rs10225173	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	7p14.3		rs10225173-T	0.32	1E-107		22.05	z score increase	Affymetrix [9061022] (imputed)	N
838	chr7	33284294	33284295	rs10225173	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	7p14.3		rs10225173-T	0.32	6E-35		12.33	z score increase	Affymetrix [9061022] (imputed)	N
838	chr7	33284294	33284295	rs10225173	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	7p14.3	NR	rs10225173-T	0.3017	1E-17				NR [9056863] (imputed)	N
838	chr7	33284294	33284295	rs10225173	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	7p14.3		rs10225173-?	NR	3E-17				NR [9705931] (imputed)	N
838	chr7	33284294	33284295	rs10225173	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	7p14.3	TNS1	rs10225173-?		1E-15				NR [7428630] (imputed)	N
839	chr7	33324103	33324104	rs6946608	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	7p14.3		rs6946608-G	0.34	8E-13		7.16	z score increase	Affymetrix [9061022] (imputed)	N
839	chr7	33324103	33324104	rs6946608	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	7p14.3	NR	rs6946608-G	0.3077	1E-12				NR [9056863] (imputed)	N
839	chr7	33368462	33368463	rs17170187	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	7p14.3	NR	rs17170187-?	NR	6E-10				Affymetrix [NR]	N
840	chr7	33469240	33469241	rs4720118	27976721	Wang Z	2016-12-15	Nat Commun	A large-scale genome-wide association and meta-analysis identified four novel susceptibility loci for leprosy.	Leprosy	2,743 Chinese ancestry cases, 3,573 Chinese ancestry controls	5,413 Han Chinese ancestry cases, 12,037 Han Chinese ancestry controls	7p14.3	BBS9	rs4720118-T	0.31	4E-10		1.16		Illumina [5546030] (imputed)	N
840	chr7	33489222	33489223	rs10250448	34607834	Dawed AY	2021-10-04	Diabetes Care	Genome-Wide Meta-analysis Identifies Genetic Variants Associated With Glycemic Response to Sulfonylureas.	Reduction in HbA1c levels in response to sulfonylureas treatment in type 2 diabetes	5,485 European ancestry individuals	NA	7p14.3		rs10250448-G	0.1	9E-6		0.15	[0.091-0.209] unit increase	Affymetrix, Illumina [538635] (imputed)	N
840	chr7	33495223	33495224	rs117742456	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	7p14.3		rs117742456-?	NR	3E-10				NR [~ 8900000] (imputed)	N
840	chr7	33505668	33505670	rs202162020	29346644	Yan Q	2018-01-15	Hum Mol Genet	Genome-wide Analysis of Disease Progression in Age-related Macular Degeneration.	Disease progression in age-related macular degeneration	1,105 progressed eyes and 3,912 non-progressed eyes from 2,721 European ancestry individuals	NA	7p14.3	BBS9	rs202162020-T	0.06	1E-6		1.96		Illumina [8974355] (imputed)	N
840	chr7	33510615	33510616	rs6462481	26423011	Wain LV	2015-09-27	Lancet Respir Med	Novel insights into the genetics of smoking behaviour, lung function, and chronic obstructive pulmonary disease (UK BiLEVE): a genetic association study in UK Biobank.	Lung function in never smokers (low FEV1 vs high FEV1)	9,745 European ancestry individuals with low FEV1 measurements, 4,902 European ancestry individuals with high FEV1 measurements	NA	7p14.3	BBS9	rs6462481-T	0.228	4E-7		1.17	[1.101-1.244]	Affymetrix [28509962] (imputed)	N
840	chr7	33511630	33511631	rs1362227	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Intraocular pressure	133,492 European ancestry individuals	NA	7p14.3	BBS9	rs1362227-A	0.43	9E-8				Affymetrix, Illumina [8002429] (imputed)	N
840	chr7	33511630	33511631	rs1362227	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	7p14.3	BBS9	rs1362227-A	0.429	3E-9		0.089	[0.06-0.118] unit increase	Affymetrix, Illumina [NR] (imputed)	N
840	chr7	33540724	33540725	rs62451225	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure in major depressive disorder-negative individuals	10,701 European ancestry cases, 39,677 European ancestry controls	NA	7p14.3	NR	rs62451225-T	0.231933	7E-6		1.124	[1.07-1.18]	Affymetrix [7791636] (imputed)	N
840	chr7	33541129	33541130	rs79995619	30678657	Westphal S	2019-01-24	BMC Cardiovasc Disord	Genome-wide association study of myocardial infarction, atrial fibrillation, acute stroke, acute kidney injury and delirium after cardiac surgery - a sub-analysis of the RIPHeart-Study.	Postoperative stroke after cardiac surgery	17 cases, 1,089 controls	NA	7p14.3	BBS9	rs79995619-?	NR	3E-7	(adjusted for atrial fibrillation, delirium, myocardial infarction and renal failure)	999.99994	[16.67-?]	Illumina [9007469] (imputed)	N
840	chr7	33543637	33543638	rs12154346	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Bacteroides faecis abundance in stool	5,959 Finnish ancestry individuals	NA	7p14.3		rs12154346-G	0.0429417	2E-8		0.255706	[0.17-0.35] unit increase	Illumina [7980478] (imputed)	N
840	chr7	33550040	33550041	rs10262995	26083657	Stafford-Smith M	2015-06-17	Kidney Int	Genome-wide association study of acute kidney injury after coronary bypass graft surgery identifies susceptibility loci.	Acute kidney injury in coronary artery bypass surgery (creatinine rise)	873 European ancestry cases	380 European ancestry cases	7p14.3	BBS9	rs10262995-A	0.087	2E-7		12.84	[7.98-17.7] unit increase	Illumina [530716] (imputed)	N
841	chr7	33673264	33673265	rs17170316	21993531	Kuparinen T	2011-10-13	Genes Immun	Genome-wide association study does not reveal major genetic determinants for anti-cytomegalovirus antibody response.	Cytomegalovirus antibody response	1,485 European ancestry sero-postitive individuals, 648 European ancestry sero-negative individuals	NA	7p14.3	intergenic	rs17170316-A	0.07	8E-7		0.325	[0.20-0.45] unit decrease	Illumina [546677]	N
842	chr7	33701990	33701991	rs17170333	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	7p14.3	NR	rs17170333-?	NR	1E-9	(X3rd ventricle)			NR [9227495] (imputed)	N
842	chr7	33750140	33750141	rs12701320	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7p14.3		rs12701320-?	NR	1E-10				NR [~ 8900000] (imputed)	N
842	chr7	33786982	33786988	rs771362288	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	7p14.3	RP11-89N17.2	rs771362288-CTCTGTT	0.9983	3E-6		0.6784	[0.39-0.96] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
843	chr7	33826588	33826589	rs12671896	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	7p14.3	NR	rs12671896-G	0.2345	1E-12				NR [9056863] (imputed)	N
843	chr7	33834321	33834322	rs1362928	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	7p14.3		rs1362928-C	0.2	6E-10		6.19	z score increase	Affymetrix [9061022] (imputed)	N
843	chr7	33847891	33847892	rs4723335	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	7p14.3		rs4723335-T	0.18	2E-10		6.37	z score increase	Affymetrix [9061022] (imputed)	N
843	chr7	33864566	33864567	rs78717017	29596498	Charles BA	2018-03-29	PLoS One	Analyses of genome wide association data, cytokines, and gene expression in African-Americans with benign ethnic neutropenia.	Low white blood cell count (conditioned on rs2814778)	592 African American individuals with low white blood cell count, 586 African American individuals with high white blood cell count	NA	7p14.3	intergenic	rs78717017-G	0.9218	2E-6		2.5216	[2.14-2.9]	Illumina [at least 656747] (imputed)	N
843	chr7	33868321	33868322	rs111736039	29596498	Charles BA	2018-03-29	PLoS One	Analyses of genome wide association data, cytokines, and gene expression in African-Americans with benign ethnic neutropenia.	Low white blood cell count (conditioned on rs2814778)	592 African American individuals with low white blood cell count, 586 African American individuals with high white blood cell count	NA	7p14.3	intergenic	rs111736039-G	0.9223	2E-6		2.5348	[2.15-2.92]	Illumina [at least 656747] (imputed)	N
843	chr7	33868802	33868803	rs75178228	29596498	Charles BA	2018-03-29	PLoS One	Analyses of genome wide association data, cytokines, and gene expression in African-Americans with benign ethnic neutropenia.	Low white blood cell count (conditioned on rs2814778)	592 African American individuals with low white blood cell count, 586 African American individuals with high white blood cell count	NA	7p14.3	intergenic	rs75178228-T	0.9205	2E-6		2.4805	[2.1-2.86]	Illumina [at least 656747] (imputed)	N
843	chr7	33872589	33872590	rs113407698	29596498	Charles BA	2018-03-29	PLoS One	Analyses of genome wide association data, cytokines, and gene expression in African-Americans with benign ethnic neutropenia.	Low white blood cell count (conditioned on rs2814778)	592 African American individuals with low white blood cell count, 586 African American individuals with high white blood cell count	NA	7p14.3	intergenic	rs113407698-G	0.9227	2E-6		2.5454	[2.16-2.93]	Illumina [at least 656747] (imputed)	N
843	chr7	33877730	33877731	rs77255239	29596498	Charles BA	2018-03-29	PLoS One	Analyses of genome wide association data, cytokines, and gene expression in African-Americans with benign ethnic neutropenia.	Low white blood cell count (conditioned on rs2814778)	592 African American individuals with low white blood cell count, 586 African American individuals with high white blood cell count	NA	7p14.3	intergenic	rs77255239-A	0.9277	1E-7		2.8892	[2.49-3.28]	Illumina [at least 656747] (imputed)	N
843	chr7	33879538	33879539	rs77998448	29596498	Charles BA	2018-03-29	PLoS One	Analyses of genome wide association data, cytokines, and gene expression in African-Americans with benign ethnic neutropenia.	Low white blood cell count (conditioned on rs2814778)	592 African American individuals with low white blood cell count, 586 African American individuals with high white blood cell count	NA	7p14.3	intergenic	rs77998448-A	0.928	1E-7		2.8926	[2.5-3.29]	Illumina [at least 656747] (imputed)	N
843	chr7	33913403	33913404	rs3815652	30738427	Penney ME	2019-02-09	BMC Cancer	A genome-wide association study identifies single nucleotide polymorphisms associated with time-to-metastasis in colorectal cancer.	Metastasis in stage I-III microsatellite instability low/stable colorectal cancer (time to event)	379 European ancestry cases	NA	7p14.3	NR	rs3815652-T	NR	2E-8	(Recessive, Mixture cure model)	20.75	[7.20-59.80]	Illumina [810622]	N
843	chr7	33913403	33913404	rs3815652	29395996	van Laarhoven A	2018-01-23	Lancet Infect Dis	Cerebral tryptophan metabolism and outcome of tuberculous meningitis: an observational cohort study.	CSF tryptophan concentration in tuberculous meningitis	130 individuals	NA	7p14.3	BMPER	rs3815652-?		1E-7		1.83	unit increase	Illumina [4751257] (imputed)	N
844	chr7	33953871	33953872	rs6952495	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	7p14.3		rs6952495-?	NR	4E-9				NR [~ 8900000] (imputed)	N
844	chr7	33961457	33961458	rs73310815	31504550	Bradfield JP	2019-07-05	Hum Mol Genet	A Trans-ancestral Meta-Analysis of Genome-Wide Association Studies Reveals Loci Associated with Childhood Obesity.	Childhood obesity	8,613 European ancestry cases, 3,213 African American cases, 69 Moroccan ancestry cases, 986 Hispanic/Latino cases, 124 East Asian ancestry cases, 12,696 European ancestry controls, 1,392 African American controls, 64 Moroccan ancestry controls, 993 Hispanic/Latino controls, 454 East Asian ancestry controls	NA	7p14.3	NR	rs73310815-T	NR	5E-6	(African)	0.409	[0.23-0.58] unit increase	Affymetrix, Illumina [up to 15123508] (imputed)	N
844	chr7	34043347	34043348	rs10951405	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls, 2,149 African ancestry cases, 6,055 African ancestry controls, 1,239 Japanese ancestry cases, 3,976 Japanese ancestry controls, 606 Latino cases, 792 Latino controls	NA	7p14.3	BMPER, BBS9, NPSR1	rs10951405-T	0.89	3E-6	(Japanese)	1.44	[1.24-1.68]	Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
845	chr7	34093453	34093454	rs74629737	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	7p14.3	BMPER	rs74629737-C	1.0	8E-7	(AA)	4.013	NR unit increase	Illumina [NR] (imputed)	N
845	chr7	34093996	34093997	rs17169634	33657282	Liu X	2021-03-03	Aging Cell	Integrated genetic analyses revealed novel human longevity loci and reduced risks of multiple diseases in a cohort study of 15,651 Chinese individuals.	Longevity	11,045 Chinese ancestry individuals	NA	7p14.3	BMPER	rs17169634-G	NR	8E-15		0.3084	[0.23-0.39] unit increase	Affymetrix, Illumina [NR] (imputed)	N
845	chr7	34093996	34093997	rs17169634	24770881	Nelson PT	2014-04-27	Acta Neuropathol	ABCC9 gene polymorphism is associated with hippocampal sclerosis of aging pathology.	Alzheimer's disease	1443 cases and 99 controls	NA	7p14.3	BMPER	rs17169634-?	NR	1E-7				NR [4913579] (imputed)	N
845	chr7	34114711	34114712	rs76917448	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	7p14.3	intergenic	rs76917448-A	0.032	4E-6		3.65	[2.03-6.56]	Illumina [1556551]	N
845	chr7	34143255	34143256	rs1420338	28429243	Dudenkov TM	2017-04-20	Breast Cancer Res Treat	SLCO1B1 polymorphisms and plasma estrone conjugates in postmenopausal women with ER+ breast cancer: genome-wide association studies of the estrone pathway.	Estrone/androstenedione ratio in resected early stage-receptor positive breast cancer	707 European ancestry postmenopausal cases, 52 African ancestry postmenopausal cases, 15 Asian ancestry postmenopausal cases	NA	7p14.3	BMPER	rs1420338-G	0.3988	7E-6		0.2432	[0.14-0.35] unit decrease	Illumina [8203257] (imputed)	N
846	chr7	34228818	34228819	rs60083876	29422769	Shah RL	2018-02-05	Mol Vis	A genome-wide association study of corneal astigmatism: The CREAM Consortium.	Corneal astigmatism	9,293 European ancestry cases, 12,957 European ancestry controls, 4,349 Asian ancestry cases, 4,771 Asian ancestry controls	NA	7p14.3	BMPER	rs60083876-A	0.95	7E-6		1.31	[1.17-1.48]	NR [~ 55000000] (imputed)	N
847	chr7	34354796	34354797	rs78878767	33904754	Cartwright R	2021-04-27	J Urol	Genome Wide Association Study Identifies Two Novel Loci Associated with Female Stress and Urgency Urinary Incontinence.	Urgency urinary incontinence	870 European ancestry cases, 8,109 European ancestry controls	744 European ancestry cases, 3,325 European ancestry controls	7p14.3		rs78878767-A	NR	2E-7		4.26	[2.56-7.1]	Illumina [9700000] (imputed)	N
848	chr7	34472877	34472878	rs186476798	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA	7p14.3	NR	rs186476798-?	NR	3E-6		0.2112	[0.12-0.3] unit increase	Illumina [at least 560000] (imputed)	N
848	chr7	34493946	34493947	rs1419784	30196971	Bray MJ	2018-09-01	Fertil Steril	Transethnic and race-stratified genome-wide association study of fibroid characteristics in African American and European American women.	Uterine fibroid number (single vs multiple)	636 African American or European ancestry female individuals with single fibroid, 822 African American or European ancestry female individuals with multiple fibroids	NA	7p14.3	BMPER, NPSR1	rs1419784-A	0.73	8E-7		1.54	[1.30-1.83]	Affymetrix [up to 9627525] (imputed)	N
848	chr7	34586239	34586240	rs720756	29967566	Roberts CH	2018-06-03	Mediators Inflamm	Pathway-Wide Genetic Risks in Chlamydial Infections Overlap between Tissue Tropisms: A Genome-Wide Association Scan.	Anti-chlamydia trachomatis IgG seropositivity	71 Dutch ancestry cases, 169 Dutch ancestry controls	NA	7p14.3	NPSR1-AS1, NPSR1	rs720756-T	0.953	3E-7		1.6666665		Illumina [9443221] (imputed)	N
849	chr7	34624711	34624712	rs7455465	30898391	Lawrenson K	2019-03-19	Gynecol Oncol	Genome-wide association studies identify susceptibility loci for epithelial ovarian cancer in east Asian women.	Epithelial ovarian cancer	3,238 East Asian ancestry cases, 4,083 East Asian ancestry controls	NA	7p14.3		rs7455465-?	NR	8E-6	(lmp)	3.32		Illumina [11595112] (imputed)	N
849	chr7	34697059	34697060	rs2530544	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	7p14.3	NR	rs2530544-G	0.768357767245216	8E-7	(IGP17)	0.1982	[0.12-0.28] unit increase	Illumina [~ 2500000] (imputed)	N
849	chr7	34697139	34697140	rs2530545	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	7p14.3	NR	rs2530545-C	0.806018537605697	7E-6	(IGP53)	0.1859	[0.11-0.27] unit increase	Illumina [~ 2500000] (imputed)	N
849	chr7	34721272	34721273	rs77525697	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	7,894 Sub-Saharan African ancestry individuals	NA	7p14.3		rs77525697-G	0.954016	6E-6		0.0201273	[0.011-0.029] unit decrease	Illumina [13900000] (imputed)	N
850	chr7	34736201	34736202	rs323907	29678681	Matana A	2018-04-18	Genomics	Genome-wide meta-analysis identifies novel gender specific loci associated with thyroid antibodies level in Croatians.	Plasma anti-thyroglobulin levels	1,596 Croatian ancestry women, 1,033 Croatian ancestry men	NA	7p14.3	NPSR1	rs323907-C	NR	3E-7	(men)	0.3699343	[0.23-0.51] unit increase	Illumina [5527232] (imputed)	N
851	chr7	34899413	34899414	rs181328644	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	7p14.3	AAA1	rs181328644-C	0.999	3E-6	(AA)	0.348	unit increase	Illumina [NR] (imputed)	N
851	chr7	34937536	34937537	rs146622168	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	7p14.3	Intergenic	rs146622168-T	1.0	3E-6	(AA)	2.101	NR unit increase	Illumina [NR] (imputed)	N
851	chr7	34940038	34940039	rs10252228	30102679	Hara M	2018-08-10	Med Sci Sports Exerc	Genome-wide Association Study of Leisure-Time Exercise Behavior in Japanese Adults.	Leisure-time exercise behaviour	1,789 Japanese ancestry physically active cases, 12,191 Japanese ancestry physically inactive controls	250 Japanese ancestry physically active cases, 1,786 Japanese ancestry physically inactive controls	7p14.2	DPY19L1, NPSR1	rs10252228-G	0.209	2E-9		0.027	[0.018-0.036] unit increase	Illumina [up to 7094228] (imputed)	N
851	chr7	34977269	34977270	rs189806577	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	7p14.2	DPY19L1	rs189806577-T	1.0	4E-6	(AA)	2.193	NR unit increase	Illumina [NR] (imputed)	N
852	chr7	35020842	35020843	rs328902	29899525	Klimentidis YC	2018-06-13	Int J Obes (Lond)	Genome-wide association study of habitual physical activity in over 377,000 UK Biobank participants identifies multiple variants including CADM2 and APOE.	Vigorous physical activity	98,060 European ancestry active cases, 162,995 European ancestry inactive controls	NA	7p14.2	DPY19L1	rs328902-?	0.31	6E-10		1.0416667		Affymetrix [11800000] (imputed)	N
852	chr7	35022970	35022971	rs73098786	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	7p14.2	DPY19L1	rs73098786-T	0.999	5E-6	(AA)	2.194	NR unit increase	Illumina [NR] (imputed)	N
852	chr7	35053624	35053625	rs184661104	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (underestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	7p14.2	NR	rs184661104-?	NR	3E-8		5.566	NR z score increase	Illumina [at least 830937] (imputed)	N
852	chr7	35078005	35078006	rs329272	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fruit consumption	335,576 European ancestry individuals	NA	7p14.2	DPY19L1	rs329272-?	NR	1E-8		0.0138789	[0.0091-0.0187] unit decrease	Affymetrix [25921788] (imputed)	N
852	chr7	35103468	35103469	rs329557	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Systolic blood pressure (long-term average)	5,304 African American individuals, 13,137 European ancestry individuals, 1,317 Hispanic individuals, 1,439 admixed individuals, 703 Chinese ancestry individuals	6,500 African American individuals, 2,451 European ancestry individuals, 2,869 Hispanic individuals	7p14.2	NR	rs329557-A	0.4579	8E-7		0.5597	[0.34-0.78] mmHg increase	Affymetrix, Illumina [NR] (imputed)	N
852	chr7	35103468	35103469	rs329557	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Systolic blood pressure (long-term average)	5,304 African American individuals	6,500 African American individuals	7p14.2	NR	rs329557-A	0.4677	1E-6		0.9776	[0.59-1.37] mmHg increase	Affymetrix, Illumina [NR] (imputed)	N
853	chr7	35153400	35153401	rs183498415	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	7p14.2	DPY19L2P1	rs183498415-T	1.0	4E-6	(AA)	2.365	NR unit increase	Illumina [NR] (imputed)	N
853	chr7	35231724	35231725	rs10266280	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	7p14.2		rs10266280-A	NR	4E-12		0.0099	[0.0072-0.0126] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
853	chr7	35238531	35238532	rs3206736	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Diastolic blood pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	7p14.2	chr7mb35	rs3206736-T	0.475462799	6E-6		0.1301	[0.074-0.187] unit decrease	Affymetrix [~ 9800000] (imputed)	N
853	chr7	35257520	35257521	rs12154802	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	7p14.2	TBX20	rs12154802-A	0.313	3E-7		0.037	[0.023-0.051] unit decrease	Affymetrix [7947838] (imputed)	N
853	chr7	35258276	35258277	rs58437978	27798624	Eppinga RN	2016-10-31	Nat Genet	Identification of genomic loci associated with resting heart rate and shared genetic predictors with all-cause mortality.	Resting heart rate	127,919 European ancestry individuals, 2,478 Asian ancestry individuals, 1,734 Black individuals, 684 Mixed ancestry individuals, 1,436 individuals	130,795 European ancestry individuals	7p14.2	TBX20	rs58437978-C	0.5	3E-12		0.2402	[0.17-0.31] unit decrease	Affymetrix [19941912] (imputed)	N
854	chr7	35264730	35264731	rs181516190	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD25 on CD45RA- CD4 not regulatory T cell	3,435 Sardinian (founder/genetic isolate) ancestry individuals	NA	7p14.2		rs181516190-A	0.02223	8E-9		0.4995	[0.33-0.67] unit increase	Illumina [18357036] (imputed)	N
854	chr7	35276362	35276363	rs57812663	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7p14.2		rs57812663-?	NR	2E-13				NR [~ 8900000] (imputed)	N
854	chr7	35276633	35276634	rs2429416	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta minimum area	35,110 individuals	NA	7p14.2		rs2429416-T	0.639802	2E-10		0.0457987	[0.031-0.06] increase	Affymetrix [NR]	N
854	chr7	35276633	35276634	rs2429416	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta maximum area	31,908 individuals	NA	7p14.2		rs2429416-T	0.63929	8E-10		0.0483805	[0.033-0.064] increase	Affymetrix [NR]	N
854	chr7	35276633	35276634	rs2429416	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Systolic blood pressure (long-term average)	5,304 African American individuals, 13,137 European ancestry individuals, 1,317 Hispanic individuals, 1,439 admixed individuals, 703 Chinese ancestry individuals	6,500 African American individuals, 2,451 European ancestry individuals, 2,869 Hispanic individuals	7p14.2	NR	rs2429416-T	0.3561	5E-7		0.6373	[0.39-0.89] mmHg increase	Affymetrix, Illumina [NR] (imputed)	N
854	chr7	35277066	35277067	rs79215950	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	7p14.2	TBX20	rs79215950-A	0.67473	6E-7		1.04	[1.03-1.06]	NR [8126035] (imputed)	N
854	chr7	35286470	35286471	rs4723406	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	7p14.2	TBX20	rs4723406-?	NR	8E-11		0.0331491	[0.023-0.043] unit decrease	Illumina [4804024] (imputed)	N
854	chr7	35293971	35293972	rs336284	26079190	Galfalvy H	2015-06-16	Am J Med Genet B Neuropsychiatr Genet	A genome-wide association study of suicidal behavior.	Suicide behavior	577 European ancestry cases, 1,233 European ancestry controls	NA	7p14.2	TBX20	rs336284-A	0.45	8E-6		1.392	[1.204-1.609]	Illumina [794207]	N
854	chr7	35293971	35293972	rs336284	26079190	Galfalvy H	2015-06-16	Am J Med Genet B Neuropsychiatr Genet	A genome-wide association study of suicidal behavior.	Suicide	317 European ancestry cases, 1,233 European ancestry controls	NA	7p14.2	TBX20	rs336284-A	0.45	2E-7		1.661	[1.374-2.008]	Illumina [794207]	N
854	chr7	35295364	35295365	rs6959887	31681408	Yang XL	2019-10-11	Front Genet	Three Novel Loci for Infant Head Circumference Identified by a Joint Association Analysis.	Birth weight (MTAG)	up to 182,902 European ancestry individuals	NA	7p14.2	NR	rs6959887-A	0.61	6E-9		0.022410024	[0.015-0.03] unit increase	NR [1977400] (imputed)	N
854	chr7	35295364	35295365	rs6959887	27680694	Horikoshi M	2016-10-13	Nature	Genome-wide associations for birth weight and correlations with adult disease.	Birth weight	133,903 European ancestry individuals, 6,635 African American individuals, 420 Turkish ancestry individuals, 365 Moroccan ancestry individuals, 395 Surinamese ancestry individuals, 840 Chinese ancestry individuals.	9,799 European ancestry individuals, 1,449 Filipino ancestry individuals.	7p14.2	TBX20	rs6959887-A	0.61	1E-8		0.0209	[0.014-0.028] unit increase	Affymetrix, Illumina [at least 22434434] (imputed)	N
854	chr7	35295502	35295503	rs6963934	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	20,917 European ancestry cases, 440,906 European ancestry controls, 14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	7p14.2		rs6963934-G	NR	7E-12		0.0634	[0.045-0.081] unit decrease	Affymetrix, Illumina [25841367] (imputed)	N
854	chr7	35299656	35299657	rs77553582	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	7p14.2	TBX20	rs77553582-T	0.613028	1E-8		0.029397	[0.019-0.039] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
854	chr7	35305305	35305306	rs1362212	30012220	Prins BP	2018-07-17	Genome Biol	Exome-chip meta-analysis identifies novel loci associated with cardiac conduction, including ADAMTS6.	QRS duration	up to 77,898 European ancestry individuals, up to 7,695 African American individuals	up to 111,874 European ancestry individuals	7p14.2	intergenic	rs1362212-A	0.148081	1E-33		0.554861	[0.47-0.64] ms increase	Illumina [162199]	N
854	chr7	35305305	35305306	rs1362212	30012220	Prins BP	2018-07-17	Genome Biol	Exome-chip meta-analysis identifies novel loci associated with cardiac conduction, including ADAMTS6.	QRS duration	77,898 European ancestry individuals	NA	7p14.2	intergenic	rs1362212-A	0.153962465537495	2E-18		0.5502846	[0.43-0.67] ms increase	Illumina [213295]	N
854	chr7	35305305	35305306	rs1362212	27659466	van der Harst P	2016-09-27	J Am Coll Cardiol	52 Genetic Loci Influencing Myocardial Mass.	QRS duration	59,565 European ancestry individuals, 690 Orcadian (founder/genetic isolate) individuals	13,263 European ancestry individuals, 3,603 African American individuals, 4,619 Indian ancestry individuals	7p14.2	NR	rs1362212-?	NR	3E-14	(EA)			Affymetrix, Illumina, Perlegen [at least 2766983] (imputed)	N
854	chr7	35305305	35305306	rs1362212	27577874	Evans DS	2016-08-29	Hum Mol Genet	Fine-mapping, novel loci identification, and SNP association transferability in a genome-wide association study of QRS duration in African Americans.	QRS duration	up to 13,031 African American individuals, 40,407 European ancestry individuals	NA	7p14.2	TBX20	rs1362212-A	0.18	1E-13	(European)	0.69	[NR] millisecond increase	Affymetrix, Illumina [2955816] (imputed)	N
854	chr7	35305305	35305306	rs1362212	27577874	Evans DS	2016-08-29	Hum Mol Genet	Fine-mapping, novel loci identification, and SNP association transferability in a genome-wide association study of QRS duration in African Americans.	QRS duration	up to 13,031 African American individuals, 40,407 European ancestry individuals	NA	7p14.2	TBX20	rs1362212-A		1E-14		0.68	[0.5-0.86] millisecond increase	Affymetrix, Illumina [2955816] (imputed)	N
854	chr7	35306982	35306983	rs1419856	27659466	van der Harst P	2016-09-27	J Am Coll Cardiol	52 Genetic Loci Influencing Myocardial Mass.	QRS duration	59,565 European ancestry individuals, 690 Orcadian (founder/genetic isolate) individuals	13,263 European ancestry individuals, 3,603 African American individuals, 4,619 Indian ancestry individuals	7p14.2	TBX20	rs1419856-?	NR	7E-18	(EA)	0.67	[0.51-0.83] unit increase	Affymetrix, Illumina, Perlegen [at least 2766983] (imputed)	N
854	chr7	35310656	35310657	rs13232979	30679814	van Setten J	2019-01-24	Eur J Hum Genet	Genome-wide association meta-analysis of 30,000 samples identifies seven novel loci for quantitative ECG traits.	QRS duration	2,177 Erasmus Rucphen Family (founder/genetic isolate) individuals, 23,332 European ancestry individuals	391 Carlantino (founder/genetic isolate) individuals, 981 Friuli Venezia Giulia (founder/genetic isolate) individuals, 30,760 European ancestry individuals, 2,048 African American individuals	7p14.2	TBX20	rs13232979-A	0.117	1E-9		0.841	[0.57-1.11] unit increase	Affymetrix, Illumina [at least 19000000] (imputed)	N
854	chr7	35346022	35346023	rs535807778	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	7p14.2	NR	rs535807778-?	NR	3E-6		0.95785	[0.56-1.36] unit decrease	NR [13958389] (imputed)	N
854	chr7	35349145	35349146	rs11765936	35210625	Barc J	2022-02-24	Nat Genet	Genome-wide association analyses identify new Brugada syndrome risk loci and highlight a new mechanism of sodium channel regulation in disease susceptibility.	Brugada syndrome	2,820 European ancestry cases, 10,001 European ancestry controls	NA	7p14.2	TBX20	rs11765936-G	0.15	4E-11		1.37	[1.25 - 1.49]	Affymetrix, Illumina [6990521] (imputed)	N
854	chr7	35364517	35364518	rs190894416	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Dysentery	411 East Asian ancestry cases, 178,071 East Asian ancestry controls	NA	7p14.2		rs190894416-T	0.01084269	7E-9		2.7683785	[1.83-3.71] unit increase	Illumina [13429933] (imputed)	N
854	chr7	35364517	35364518	rs190894416	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Dysentery	2,733 European ancestry cases, 346,689 European ancestry controls, 411 East Asian ancestry cases, 178,071 East Asian ancestry controls	NA	7p14.2		rs190894416-T	NR	7E-9		2.7684	[1.83-3.71] unit increase	Affymetrix, Illumina [20457834] (imputed)	N
855	chr7	35401446	35401447	rs2392362	21130836	Luciano M	2010-12-03	Biol Psychol	Whole genome association scan for genetic polymorphisms influencing information processing speed.	Information processing speed	Up to 4,039 European ancestry individuals	NA	7p14.2	AC007652.1	rs2392362-T	0.27	2E-6	(inspection time)	0.14	[0.08-0.20] unit increase	Illumina [~ 610000]	N
855	chr7	35401634	35401635	rs10225221	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	7p14.2	NR	rs10225221-C	0.298914	3E-8		0.00492559	[0.0031-0.0067] unit increase	Affymetrix [16582909] (imputed)	N
855	chr7	35401634	35401635	rs10225221	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	7p14.2	NR	rs10225221-C	0.298914	9E-7		0.00498651	[0.003-0.007] unit increase	Affymetrix [16582965] (imputed)	N
855	chr7	35412362	35412363	rs340397	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	7p14.2	TBX20, HERPUD2	rs340397-T	0.3762	6E-22		0.6306	[0.5-0.76] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
855	chr7	35413787	35413788	rs340398	35210625	Barc J	2022-02-24	Nat Genet	Genome-wide association analyses identify new Brugada syndrome risk loci and highlight a new mechanism of sodium channel regulation in disease susceptibility.	Brugada syndrome	2,820 European ancestry cases, 10,001 European ancestry controls	NA	7p14.2	TBX20	rs340398-C	0.38	2E-9		1.22	[1.15- 1.30]	Affymetrix, Illumina [6990521] (imputed)	N
855	chr7	35440154	35440155	rs11762074	31801372	Strawbridge RJ	2019-12-05	Arterioscler Thromb Vasc Biol	Carotid Intima-Media Thickness: Novel Loci, Sex-Specific Effects, and Genetic Correlations With Obesity and Glucometabolic Traits in UKB.	Carotid intima media thickness (maximum)	22,179 British ancestry individuals	NA	7p14.2	LOC401324	rs11762074-T	0.77	4E-10		0.014	[0.01-0.018] unit decrease	NR [NR] (imputed)	N
855	chr7	35461966	35461967	rs150260620	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta minimum area	35,110 individuals	NA	7p14.2		rs150260620-T	0.975837	5E-10		0.142908	[0.098-0.188] decrease	Affymetrix [NR]	N
855	chr7	35461966	35461967	rs150260620	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta maximum area	31,908 individuals	NA	7p14.2		rs150260620-T	0.97584	1E-10		0.150842	[0.1-0.2] decrease	Affymetrix [NR]	N
855	chr7	35467025	35467026	rs342988	31801372	Strawbridge RJ	2019-12-05	Arterioscler Thromb Vasc Biol	Carotid Intima-Media Thickness: Novel Loci, Sex-Specific Effects, and Genetic Correlations With Obesity and Glucometabolic Traits in UKB.	Carotid intima media thickness (mean-maximum)	22,179 British ancestry individuals	NA	7p14.2	NR	rs342988-C	0.28	1E-12		0.011	[0.0071-0.0149] unit increase	NR [NR] (imputed)	N
855	chr7	35467025	35467026	rs342988	31801372	Strawbridge RJ	2019-12-05	Arterioscler Thromb Vasc Biol	Carotid Intima-Media Thickness: Novel Loci, Sex-Specific Effects, and Genetic Correlations With Obesity and Glucometabolic Traits in UKB.	Carotid intima media thickness (mean)	10,708 British ancestry men, 11,471 British ancestry women	NA	7p14.2	LOC401324	rs342988-C	0.28	3E-11		0.011	[0.0071-0.0149] unit increase	NR [NR] (imputed)	N
855	chr7	35467895	35467896	rs342989	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	7p14.2		rs342989-G	NR	3E-12		0.0157	[0.011-0.02] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
855	chr7	35467895	35467896	rs342989	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	NA	7p14.2	TBX20	rs342989-A	0.229	3E-15		0.1631	[0.12-0.2] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
855	chr7	35475321	35475322	rs2541918	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Diastolic blood pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	7p14.2	chr7mb35	rs2541918-T	0.680063457	8E-7		0.1567	[0.095-0.219] unit decrease	Affymetrix [~ 9800000] (imputed)	N
855	chr7	35497055	35497055	rs35099106	31801372	Strawbridge RJ	2019-12-05	Arterioscler Thromb Vasc Biol	Carotid Intima-Media Thickness: Novel Loci, Sex-Specific Effects, and Genetic Correlations With Obesity and Glucometabolic Traits in UKB.	Carotid intima media thickness (mean)	10,708 British ancestry men, 11,471 British ancestry women	NA	7p14.2	LOC401324	rs35099106-C	0.24	5E-9	(men)	0.016	[0.01-0.022] unit increase	NR [NR] (imputed)	N
855	chr7	35505709	35505710	rs11764098	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7p14.2	HERPUD2	rs11764098-C	0.977551	9E-14	(58 ms)	0.143835	[0.11-0.18] unit increase	Affymetrix [10000000] (imputed)	N
855	chr7	35505709	35505710	rs11764098	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7p14.2	HERPUD2	rs11764098-C	0.977551	9E-13	(6 ms)	0.136537	[0.099-0.174] unit increase	Affymetrix [10000000] (imputed)	N
855	chr7	35505709	35505710	rs11764098	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7p14.2	HERPUD2	rs11764098-C	0.977551	9E-13	(56 ms)	0.137906	[0.1-0.18] unit increase	Affymetrix [10000000] (imputed)	N
855	chr7	35505709	35505710	rs11764098	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7p14.2	HERPUD2	rs11764098-C	0.977551	8E-19	(38 ms)	0.165722	[0.13-0.2] unit increase	Affymetrix [10000000] (imputed)	N
855	chr7	35505709	35505710	rs11764098	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7p14.2	HERPUD2	rs11764098-C	0.977551	8E-13	(28 ms)	0.133983	[0.096-0.172] unit increase	Affymetrix [10000000] (imputed)	N
855	chr7	35505709	35505710	rs11764098	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7p14.2	HERPUD2	rs11764098-C	0.977551	7E-15	(50 ms)	0.15045	[0.11-0.19] unit increase	Affymetrix [10000000] (imputed)	N
855	chr7	35505709	35505710	rs11764098	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7p14.2	HERPUD2	rs11764098-C	0.977551	7E-14	(10 ms)	0.144124	[0.11-0.18] unit increase	Affymetrix [10000000] (imputed)	N
855	chr7	35505709	35505710	rs11764098	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7p14.2	HERPUD2	rs11764098-C	0.977551	7E-13	(12 ms)	0.135406	[0.097-0.173] unit increase	Affymetrix [10000000] (imputed)	N
855	chr7	35505709	35505710	rs11764098	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7p14.2	HERPUD2	rs11764098-C	0.977551	7E-13	(-6 ms)	0.137298	[0.099-0.175] unit increase	Affymetrix [10000000] (imputed)	N
855	chr7	35505709	35505710	rs11764098	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7p14.2	HERPUD2	rs11764098-C	0.977551	6E-20	(40 ms)	0.169301	[0.13-0.21] unit increase	Affymetrix [10000000] (imputed)	N
855	chr7	35505709	35505710	rs11764098	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7p14.2	HERPUD2	rs11764098-C	0.977551	6E-19	(36 ms)	0.162585	[0.12-0.2] unit increase	Affymetrix [10000000] (imputed)	N
855	chr7	35505709	35505710	rs11764098	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7p14.2	HERPUD2	rs11764098-C	0.977551	5E-9	(18 ms)	0.109406	[0.071-0.147] unit increase	Affymetrix [10000000] (imputed)	N
855	chr7	35505709	35505710	rs11764098	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7p14.2	HERPUD2	rs11764098-C	0.977551	5E-18	(34 ms)	0.157294	[0.12-0.2] unit increase	Affymetrix [10000000] (imputed)	N
855	chr7	35505709	35505710	rs11764098	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7p14.2	HERPUD2	rs11764098-C	0.977551	5E-17	(46 ms)	0.162283	[0.12-0.2] unit increase	Affymetrix [10000000] (imputed)	N
855	chr7	35505709	35505710	rs11764098	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7p14.2	HERPUD2	rs11764098-C	0.977551	5E-14	(-8 ms)	0.144344	[0.11-0.18] unit increase	Affymetrix [10000000] (imputed)	N
855	chr7	35505709	35505710	rs11764098	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7p14.2	HERPUD2	rs11764098-C	0.977551	5E-14	(-14 ms)	0.148389	[0.11-0.19] unit increase	Affymetrix [10000000] (imputed)	N
855	chr7	35505709	35505710	rs11764098	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7p14.2	HERPUD2	rs11764098-C	0.977551	5E-13	(-16 ms)	0.143048	[0.11-0.18] unit increase	Affymetrix [10000000] (imputed)	N
855	chr7	35505709	35505710	rs11764098	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7p14.2	HERPUD2	rs11764098-C	0.977551	4E-16	(32 ms)	0.148919	[0.11-0.19] unit increase	Affymetrix [10000000] (imputed)	N
855	chr7	35505709	35505710	rs11764098	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7p14.2	HERPUD2	rs11764098-C	0.977551	4E-14	(8 ms)	0.144347	[0.11-0.18] unit increase	Affymetrix [10000000] (imputed)	N
855	chr7	35505709	35505710	rs11764098	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7p14.2	HERPUD2	rs11764098-C	0.977551	4E-14	(-12 ms)	0.148605	[0.11-0.19] unit increase	Affymetrix [10000000] (imputed)	N
855	chr7	35505709	35505710	rs11764098	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7p14.2	HERPUD2	rs11764098-C	0.977551	4E-13	(52 ms)	0.140018	[0.1-0.18] unit increase	Affymetrix [10000000] (imputed)	N
855	chr7	35505709	35505710	rs11764098	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7p14.2	HERPUD2	rs11764098-C	0.977551	4E-11	(62 ms)	0.126372	[0.089-0.164] unit increase	Affymetrix [10000000] (imputed)	N
855	chr7	35505709	35505710	rs11764098	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7p14.2	HERPUD2	rs11764098-C	0.977551	4E-11	(4 ms)	0.125823	[0.088-0.164] unit increase	Affymetrix [10000000] (imputed)	N
855	chr7	35505709	35505710	rs11764098	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7p14.2	HERPUD2	rs11764098-C	0.977551	4E-10	(0 ms)	0.120607	[0.083-0.159] unit increase	Affymetrix [10000000] (imputed)	N
855	chr7	35505709	35505710	rs11764098	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7p14.2	HERPUD2	rs11764098-C	0.977551	3E-9	(22 ms)	0.108892	[0.071-0.147] unit increase	Affymetrix [10000000] (imputed)	N
855	chr7	35505709	35505710	rs11764098	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7p14.2	HERPUD2	rs11764098-C	0.977551	3E-9	(-116 ms)	0.114992	[0.077-0.153] unit increase	Affymetrix [10000000] (imputed)	N
855	chr7	35505709	35505710	rs11764098	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7p14.2	HERPUD2	rs11764098-C	0.977551	3E-8	(-122 ms)	0.106894	[0.069-0.145] unit increase	Affymetrix [10000000] (imputed)	N
855	chr7	35505709	35505710	rs11764098	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7p14.2	HERPUD2	rs11764098-C	0.977551	3E-12	(54 ms)	0.134758	[0.097-0.173] unit increase	Affymetrix [10000000] (imputed)	N
855	chr7	35505709	35505710	rs11764098	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7p14.2	HERPUD2	rs11764098-C	0.977551	3E-12	(26 ms)	0.127438	[0.09-0.165] unit increase	Affymetrix [10000000] (imputed)	N
855	chr7	35505709	35505710	rs11764098	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7p14.2	HERPUD2	rs11764098-C	0.977551	3E-11	(-18 ms)	0.134284	[0.096-0.172] unit increase	Affymetrix [10000000] (imputed)	N
855	chr7	35505709	35505710	rs11764098	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7p14.2	HERPUD2	rs11764098-C	0.977551	2E-20	(42 ms)	0.173142	[0.14-0.21] unit increase	Affymetrix [10000000] (imputed)	N
855	chr7	35505709	35505710	rs11764098	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7p14.2	HERPUD2	rs11764098-C	0.977551	2E-19	(44 ms)	0.170811	[0.13-0.21] unit increase	Affymetrix [10000000] (imputed)	N
855	chr7	35505709	35505710	rs11764098	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7p14.2	HERPUD2	rs11764098-C	0.977551	2E-14	(30 ms)	0.140776	[0.1-0.18] unit increase	Affymetrix [10000000] (imputed)	N
855	chr7	35505709	35505710	rs11764098	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7p14.2	HERPUD2	rs11764098-C	0.977551	2E-14	(-10 ms)	0.147407	[0.11-0.19] unit increase	Affymetrix [10000000] (imputed)	N
855	chr7	35505709	35505710	rs11764098	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7p14.2	HERPUD2	rs11764098-C	0.977551	2E-13	(60 ms)	0.140273	[0.1-0.18] unit increase	Affymetrix [10000000] (imputed)	N
855	chr7	35505709	35505710	rs11764098	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7p14.2	HERPUD2	rs11764098-C	0.977551	2E-10	(-2 ms)	0.122432	[0.085-0.16] unit increase	Affymetrix [10000000] (imputed)	N
855	chr7	35505709	35505710	rs11764098	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7p14.2	HERPUD2	rs11764098-C	0.977551	1E-9	(16 ms)	0.115622	[0.078-0.154] unit increase	Affymetrix [10000000] (imputed)	N
855	chr7	35505709	35505710	rs11764098	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7p14.2	HERPUD2	rs11764098-C	0.977551	1E-9	(-20 ms)	0.122275	[0.084-0.16] unit increase	Affymetrix [10000000] (imputed)	N
855	chr7	35505709	35505710	rs11764098	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7p14.2	HERPUD2	rs11764098-C	0.977551	1E-8	(64 ms)	0.107783	[0.07-0.146] unit increase	Affymetrix [10000000] (imputed)	N
855	chr7	35505709	35505710	rs11764098	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7p14.2	HERPUD2	rs11764098-C	0.977551	1E-8	(20 ms)	0.106775	[0.069-0.145] unit increase	Affymetrix [10000000] (imputed)	N
855	chr7	35505709	35505710	rs11764098	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7p14.2	HERPUD2	rs11764098-C	0.977551	1E-15	(48 ms)	0.155307	[0.12-0.19] unit increase	Affymetrix [10000000] (imputed)	N
855	chr7	35505709	35505710	rs11764098	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7p14.2	HERPUD2	rs11764098-C	0.977551	1E-11	(-4 ms)	0.128327	[0.091-0.166] unit increase	Affymetrix [10000000] (imputed)	N
855	chr7	35505709	35505710	rs11764098	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7p14.2	HERPUD2	rs11764098-C	0.977551	1E-10	(24 ms)	0.117813	[0.08-0.156] unit increase	Affymetrix [10000000] (imputed)	N
855	chr7	35505709	35505710	rs11764098	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7p14.2	HERPUD2	rs11764098-C	0.977551	1E-10	(2 ms)	0.120976	[0.083-0.159] unit increase	Affymetrix [10000000] (imputed)	N
856	chr7	35527236	35527237	rs343057	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7p14.2	HERPUD2	rs343057-G	0.935388	5E-10	(20 ms)	0.07273	[0.05-0.095] unit decrease	Affymetrix [10000000] (imputed)	N
856	chr7	35527236	35527237	rs343057	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7p14.2	HERPUD2	rs343057-G	0.935388	4E-12	(16 ms)	0.0797108	[0.057-0.102] unit decrease	Affymetrix [10000000] (imputed)	N
856	chr7	35527236	35527237	rs343057	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7p14.2	HERPUD2	rs343057-G	0.935388	3E-10	(12 ms)	0.0709143	[0.048-0.093] unit decrease	Affymetrix [10000000] (imputed)	N
856	chr7	35527236	35527237	rs343057	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7p14.2	HERPUD2	rs343057-G	0.935388	2E-8	(10 ms)	0.0644895	[0.042-0.087] unit decrease	Affymetrix [10000000] (imputed)	N
856	chr7	35527236	35527237	rs343057	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7p14.2	HERPUD2	rs343057-G	0.935388	1E-11	(18 ms)	0.0785824	[0.056-0.101] unit decrease	Affymetrix [10000000] (imputed)	N
856	chr7	35545786	35545787	rs11763856	30679814	van Setten J	2019-01-24	Eur J Hum Genet	Genome-wide association meta-analysis of 30,000 samples identifies seven novel loci for quantitative ECG traits.	PR interval	2,370 Erasmus Rucphen Family (founder/genetic isolate) individuals, 29,325 European ancestry individuals	391 Carlantino (founder/genetic isolate) individuals, 981 Friuli Venezia Giulia (founder/genetic isolate) individuals, 31,033 European ancestry individuals, 2,070 African American individuals	7p14.2	HERPUD2	rs11763856-T	0.035	1E-8		3.055	[2-4.11] unit increase	Affymetrix, Illumina [at least 19000000] (imputed)	N
856	chr7	35545786	35545787	rs11763856	30046033	van Setten J	2018-07-25	Nat Commun	PR interval genome-wide association meta-analysis identifies 50 loci associated with atrial and atrioventricular electrical activity.	PR interval	92,340 European ancestry individuals	NA	7p14.2	TBX20, HERPUD2	rs11763856-T	0.03	4E-10		3.1	[2.14-4.06] ms increase	Affymetrix, Illumina [2712613] (imputed)	N
856	chr7	35554787	35554788	rs343064	20708005	Chalasani N	2010-08-10	Gastroenterology	Genome-wide association study identifies variants associated with histologic features of nonalcoholic Fatty liver disease.	Non-alcoholic fatty liver disease histology (other)	236 European ancestry cases	NA	7p14.2	intergenic	rs343064-A	0.40	3E-8	(Fibrosis)	1.31	[NR] unit increase	Illumina [324623]	N
856	chr7	35575753	35575754	rs10254958	34941638	Avasthi KK	2021-12-08	Pediatr Rep	Identification of Novel Genomic Variations in Susceptibility to Nonsyndromic Cleft Lip and Palate Patients.	Nonsyndromic cleft lip with or without cleft palate	86 Indian ancestry cases, 10 Indian ancestry controls	NA	7p14.2		rs10254958-?	NR	2E-7				Affymetrix [810906]	N
856	chr7	35586205	35586206	rs6954895	24489884	Mick E	2014-01-01	PLoS One	Genome-wide association study of proneness to anger.	Anger	8,747 European ancestry individuals	NA	7p14.2	intergenic	rs6954895-G	0.257	2E-7	(Temperament)	0.16	[NR] unit increase	Affymetrix [677643]	N
856	chr7	35607232	35607233	rs6973609	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	7p14.2	HERPUD2	rs6973609-G	0.381	9E-6	(TBF-b1 )	0.03	[NR] pg/mL increase	Illumina [899892]	N
856	chr7	35610161	35610162	rs1003247	24684796	Cox AJ	2014-03-11	Neurobiol Aging	Heritability and genetic association analysis of cognition in the Diabetes Heart Study.	Cognitive function	423 type 2 diabetes cases and 127 unaffected siblings from 257 families	NA	7p14.2	HERPUD2	rs1003247-C	0.261	6E-6	(Semantic Fluency)	2.2814	[1.31-3.26] unit increase	Affymetrix [> 371951] (imputed)	N
857	chr7	35653137	35653138	rs10261066	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	7p14.2	NR	rs10261066-?	NR	7E-7	(UDP glucose; UDP galactose)	0.20358354	[0.12-0.28] unit increase	Affymetrix [at least 2500000] (imputed)	N
857	chr7	35665677	35665678	rs73094438	32589924	Bi W	2020-06-23	Am J Hum Genet	A Fast and Accurate Method for Genome-Wide Time-to-Event Data Analysis and Its Application to UK Biobank.	Essential hypertension (time to event)	76,566 British ancestry cases, 206,305 British ancestry controls	NA	7p14.2	LOC401324, HERPUD2	rs73094438-?	NR	2E-8				NR [~ 24000000] (imputed)	N
859	chr7	35928274	35928275	rs1143149	34002017	Shen S	2021-05-17	NPJ Precis Oncol	A multi-omics study links TNS3 and SEPT7 to long-term former smoking NSCLC survival.	Lung cancer prognosis in former smokers	1,299 European ancestry long-term former smokers	NA	7p14.2	SEPT7	rs1143149-G	0.34	1E-8		1.36	[1.22-1.51]	Illumina [100680]	N
859	chr7	35946258	35946259	rs76280028	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Endometriosis	645 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	7p14.2	Intergenic	rs76280028-?		6E-6		1.92	[1.45-2.55]	Illumina [7645193] (imputed)	N
859	chr7	35961136	35961137	rs6957752	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	23,963 European ancestry cases, 306,942 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	43,254 European ancestry cases, 1,471,118 European ancestry controls	7p14.2	SEPT7, LOC101928618	rs6957752-T	NR	1E-6		0.0371	unit increase	Illumina [15409056] (imputed)	N
860	chr7	36084528	36084529	rs2710804	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	7p14.2		rs2710804-C	NR	1E-14		0.0166	[0.012-0.021] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
860	chr7	36084528	36084529	rs2710804	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	7p14.2		rs2710804-C	NR	5E-11		0.0148	[0.01-0.019] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
860	chr7	36084528	36084529	rs2710804	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	7p14.2		rs2710804-C	NR	4E-20		0.0192	[0.015-0.023] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
860	chr7	36084528	36084529	rs2710804	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	7p14.2		rs2710804-C	NR	4E-12		0.0158	[0.011-0.02] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
860	chr7	36084528	36084529	rs2710804	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	7p14.2		rs2710804-C	NR	1E-9		0.0138	[0.0093-0.0183] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
860	chr7	36084528	36084529	rs2710804	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	7p14.2		rs2710804-C	NR	4E-17		0.0193	[0.015-0.024] unit increase	Affymetrix, Illumina [20529698] (imputed)	N
860	chr7	36084528	36084529	rs2710804	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	7p14.2		rs2710804-C	NR	9E-10		0.0125	[0.0086-0.0164] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
860	chr7	36084528	36084529	rs2710804	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	7p14.2		rs2710804-T	0.623	7E-9				Affymetrix [10369434] (imputed)	N
860	chr7	36084528	36084529	rs2710804	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	7p14.2	LOC101928618	rs2710804-T	0.623188	1E-11		0.00278034	[0.002-0.0036] unit increase	Affymetrix [13995440] (imputed)	N
860	chr7	36084528	36084529	rs2710804	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	7p14.2	AC083864.3	rs2710804-C	0.376628	2E-25		0.023728063	[0.019-0.028] unit increase	Affymetrix [93095623] (imputed)	N
860	chr7	36084528	36084529	rs2710804	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	7p14.2	AC083864.3	rs2710804-C	0.377084	5E-14		0.017568927	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
860	chr7	36084528	36084529	rs2710804	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	7p14.2	AC083864.3	rs2710804-C	0.377092	3E-15		0.018326651	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
860	chr7	36084528	36084529	rs2710804	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	7p14.2	AC083864.3	rs2710804-C	0.376647	3E-22		0.022126196	[0.018-0.027] unit increase	Affymetrix [93095623] (imputed)	N
860	chr7	36084528	36084529	rs2710804	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	7p14.2	AC083864.3	rs2710804-C	0.376653	8E-12		0.01561517	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
860	chr7	36084528	36084529	rs2710804	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p14.2	NR	rs2710804-C	0.330595	1E-26				Affymetrix, Illumina [24649327] (imputed)	N
860	chr7	36084528	36084529	rs2710804	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	7p14.2	NR	rs2710804-C	0.375925	2E-27		0.020606	[0.017-0.024] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
860	chr7	36084528	36084529	rs2710804	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p14.2	NR	rs2710804-C	0.330771	2E-24				Affymetrix, Illumina [24588908] (imputed)	N
860	chr7	36084528	36084529	rs2710804	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	7p14.2	NR	rs2710804-C	0.376186	3E-25		0.019601	[0.016-0.023] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
860	chr7	36084528	36084529	rs2710804	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p14.2	NR	rs2710804-C	0.345277	2E-21				Affymetrix, Illumina [23114412] (imputed)	N
860	chr7	36084528	36084529	rs2710804	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	7p14.2	NR	rs2710804-C	0.376402	4E-23		0.019677	[0.016-0.024] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
860	chr7	36084528	36084529	rs2710804	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p14.2	NR	rs2710804-C	0.342711	2E-10				Affymetrix, Illumina [23472807] (imputed)	N
860	chr7	36084528	36084529	rs2710804	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	7p14.2	NR	rs2710804-C	0.376124	2E-12		0.013802	[0.01-0.0176] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
860	chr7	36084528	36084529	rs2710804	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	7p14.2		rs2710804-?	NR	3E-19				NR [~ 8900000] (imputed)	N
860	chr7	36084528	36084529	rs2710804	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	up to 92,771 European ancestry males, up to 113,387 European ancestry females	NA	7p14.2	KIAA1706	rs2710804-C	0.37	1E-8		0.021	[0.013-0.029] unit increase	Affymetrix, Illumina, Perlegen [2437193] (imputed)	N
860	chr7	36084528	36084529	rs2710804	28107422	de Vries PS	2017-01-20	PLoS One	Comparison of HapMap and 1000 Genomes Reference Panels in a Large-Scale Genome-Wide Association Study.	Fibrinogen levels	91,953 European ancestry individuals (imputed to HapMap)		7p14.2	SEPT7, EEPD1	rs2710804-?	NR	9E-9		0.0061	unit increase	Affymetrix, Illumina [2749429] (imputed)	N
860	chr7	36084528	36084529	rs2710804	28107422	de Vries PS	2017-01-20	PLoS One	Comparison of HapMap and 1000 Genomes Reference Panels in a Large-Scale Genome-Wide Association Study.	Fibrinogen levels	91,953 European ancestry individuals (imputed to 1000 Genomes)		7p14.2	SEPT7, EEPD1	rs2710804-?	NR	4E-8		0.0057	unit increase	Affymetrix, Illumina [10883314] (imputed)	N
860	chr7	36084528	36084529	rs2710804	26561523	de Vries PS	2015-11-10	Hum Mol Genet	A meta-analysis of 120 246 individuals identifies 18 new loci for fibrinogen concentration.	Fibrinogen levels	120,246 European ancestry individuals	NA	7p14.2	EEPD1	rs2710804-C	0.37	3E-9		0.0055	NR unit increase	Affymetrix, Illumina [~ 10700000] (imputed)	N
860	chr7	36085060	36085061	rs2700937	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	7p14.2	AC083864.3	rs2700937-T	0.4627	4E-9		0.02158168	[0.014-0.029] unit increase	Affymetrix [~ 2500000] (imputed)	N
860	chr7	36085141	36085142	rs2700938	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	7p14.2	NR	rs2700938-T	0.623426	1E-29		0.0235316	[0.019-0.028] unit decrease	NR [NR]	N
860	chr7	36109272	36109273	rs145200164	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	7p14.2	PP13004	rs145200164-T	0.0204629975621427	1E-7	(F_Ruminococcaceae_RNT)	0.436194	[0.27-0.6] unit decrease	Illumina [7711310] (imputed)	N
860	chr7	36123755	36123756	rs73331403	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7p14.2	NR	rs73331403-T	0.01394	4E-9	(PLD3)	0.02512	NR unit increase	Illumina [1671387] (imputed)	N
860	chr7	36123755	36123756	rs73331403	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7p14.2	NR	rs73331403-T	0.01394	2E-8	(LIPA)	0.02546	NR unit increase	Illumina [1671387] (imputed)	N
860	chr7	36123755	36123756	rs73331403	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7p14.2	NR	rs73331403-T	0.01394	1E-8	(PYCARD)	0.01891	NR unit increase	Illumina [1671387] (imputed)	N
860	chr7	36126814	36126815	rs117075240	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7p14.2	NR	rs117075240-A	0.02613	1E-8	(PYCARD)	0.01401	NR unit increase	Illumina [1671387] (imputed)	N
860	chr7	36169202	36169203	rs67050321	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	7p14.2		rs67050321-T	0.696282	1E-9		0.027556	[0.019-0.036] unit decrease	NR [11722792] (imputed)	N
860	chr7	36169202	36169203	rs67050321	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	7p14.2		rs67050321-C	NR	4E-10		0.0143	[0.0098-0.0188] unit increase	Affymetrix, Illumina [20521447] (imputed)	N
860	chr7	36169202	36169203	rs67050321	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	7p14.2	NR	rs67050321-T	0.696262	5E-20		0.0191502	[0.015-0.023] unit decrease	Affymetrix [15000001]	N
860	chr7	36169202	36169203	rs67050321	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	7p14.2	EEPD1	rs67050321-T	0.696093	2E-11		0.0152177	[0.011-0.02] unit decrease	Affymetrix [NR] (imputed)	N
860	chr7	36169202	36169203	rs67050321	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	7p14.2	RPS17P13	rs67050321-?	NR	6E-13		0.0202	[0.015-0.025] unit increase	Affymetrix [5701386] (imputed)	N
860	chr7	36170408	36170409	rs34578041	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	7p14.2	NR	rs34578041-C	NR	8E-10		0.0149	[0.01-0.02] unit increase	Affymetrix [9000000] (imputed)	N
860	chr7	36170408	36170409	rs34578041	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	7p14.2		rs34578041-?	NR	3E-8				NR [~ 8900000] (imputed)	N
860	chr7	36171619	36171620	rs2700892	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	7p14.2	NR	rs2700892-C	NR	4E-12		0.0174	[0.013-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
860	chr7	36171619	36171620	rs2700892	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	7p14.2	NR	rs2700892-C	NR	1E-9		0.0153	[0.01-0.02] unit decrease	Affymetrix [9000000] (imputed)	N
860	chr7	36171619	36171620	rs2700892	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	7p14.2	EEPD1	rs2700892-A	0.546974	2E-12		0.0138725	[0.01-0.018] unit increase	Affymetrix [NR] (imputed)	N
861	chr7	36178373	36178374	rs62451586	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	7p14.2	NR	rs62451586-G	0.890711	2E-8		0.0181441	[0.012-0.024] unit increase	NR [NR]	N
861	chr7	36179060	36179061	rs2726111	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	7p14.2		rs2726111-A	0.33256	2E-8		0.0247447	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
861	chr7	36185741	36185742	rs2700902	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	7p14.2	RP11-377H23.1	rs2700902-A	0.669013	1E-10		0.015298515	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
861	chr7	36185741	36185742	rs2700902	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	7p14.2	RP11-377H23.1	rs2700902-A	0.669009	5E-12		0.016427623	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
861	chr7	36185741	36185742	rs2700902	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	7p14.2	RP11-377H23.1	rs2700902-A	0.669024	1E-11		0.01606981	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
861	chr7	36185741	36185742	rs2700902	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	7p14.2	RP11-377H23.1	rs2700902-A	0.669029	6E-13		0.017078849	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
861	chr7	36191698	36191699	rs4302748	21507922	Ramsuran V	2011-05-01	Clin Infect Dis	Duffy-null-associated low neutrophil counts influence HIV-1 susceptibility in high-risk South African black women.	Platelet count	115 African ancestry HIV-negative individuals	NA	7p14.2	EEPD1	rs4302748-?	NR	5E-6				Illumina [874956]	N
861	chr7	36192605	36192606	rs12533197	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	HDL cholesterol levels	115,082 European ancestry individuals	NA	7p14.2		rs12533197-T	0.560822	1E-8		0.0212412	[0.014-0.029] unit increase	NR [11722792] (imputed)	N
861	chr7	36192605	36192606	rs12533197	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	7p14.2		rs12533197-T	0.560822	1E-8		0.0215404	[0.014-0.029] unit increase	NR [11722792] (imputed)	N
861	chr7	36193141	36193142	rs66763009	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	7p14.2	EEPD1	rs66763009-T	0.56052	1E-16		0.0160456	[0.012-0.02] unit increase	Affymetrix [NR] (imputed)	N
861	chr7	36199169	36199170	rs2726052	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	7p14.2	EEPD1	rs2726052-?		3E-8				Affymetrix, Illumina [NR] (imputed)	N
861	chr7	36204662	36204662	rs762848948	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	7p14.2		rs762848948-TTTTAA,rs762848948-TTTTAA	0.692577	1E-8		0.0254458	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
861	chr7	36204662	36204662	rs762848948	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	7p14.2		rs762848948-TTTTAA,rs762848948-TTTTAA	0.692577	1E-8		0.0254458	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
861	chr7	36210924	36210924	rs5883535	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium HDL	115,082 European ancestry individuals	NA	7p14.2		rs5883535-A	0.527287	1E-8		0.0220118	[0.014-0.03] unit increase	NR [11722792] (imputed)	N
861	chr7	36210924	36210924	rs5883535	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in HDL	115,082 European ancestry individuals	NA	7p14.2		rs5883535-A	0.527287	2E-8		0.0209479	[0.014-0.028] unit increase	NR [11722792] (imputed)	N
861	chr7	36210924	36210924	rs5883535	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium HDL	115,082 European ancestry individuals	NA	7p14.2		rs5883535-A	0.527287	5E-8		0.0212757	[0.014-0.029] unit increase	NR [11722792] (imputed)	N
861	chr7	36210924	36210924	rs5883535	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in HDL	115,082 European ancestry individuals	NA	7p14.2		rs5883535-A	0.527287	4E-8		0.0206639	[0.013-0.028] unit increase	NR [11722792] (imputed)	N
861	chr7	36210924	36210924	rs5883535	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	7p14.2		rs5883535-A	0.527287	6E-9		0.0220823	[0.015-0.03] unit increase	NR [11722792] (imputed)	N
861	chr7	36210924	36210924	rs5883535	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium HDL particles	115,082 European ancestry individuals	NA	7p14.2		rs5883535-A	0.527287	7E-9		0.0222505	[0.015-0.03] unit increase	NR [11722792] (imputed)	N
861	chr7	36210924	36210924	rs5883535	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of HDL particles	115,082 European ancestry individuals	NA	7p14.2		rs5883535-A	0.527287	1E-8		0.0222616	[0.015-0.03] unit increase	NR [11722792] (imputed)	N
861	chr7	36210924	36210924	rs5883535	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium HDL	115,082 European ancestry individuals	NA	7p14.2		rs5883535-A	0.527287	4E-9		0.0226713	[0.015-0.03] unit increase	NR [11722792] (imputed)	N
861	chr7	36210924	36210924	rs5883535	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	7p14.2		rs5883535-A	0.527287	4E-9		0.0226681	[0.015-0.03] unit increase	NR [11722792] (imputed)	N
861	chr7	36210924	36210924	rs5883535	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein A1 levels	115,082 European ancestry individuals	NA	7p14.2		rs5883535-A	0.527287	1E-8		0.0218948	[0.014-0.029] unit increase	NR [11722792] (imputed)	N
861	chr7	36210924	36210924	rs5883535	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	7p14.2		rs5883535-AAT	NR	6E-14		0.0161	[0.012-0.02] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
861	chr7	36211748	36211749	rs9648428	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	7p14.2	EEPD1	rs9648428-A	0.092	3E-6	(ALT/AST)	0.03	[NR] unit increase	Illumina [899892]	N
861	chr7	36225817	36225818	rs2052263	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	NA	7p14.2	EEPD1	rs2052263-G	0.8823	1E-9		0.1983	[0.13-0.26] unit decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
861	chr7	36292924	36292925	rs35580606	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	7p14.2	EEPD1	rs35580606-A	0.483091	1E-8		0.0108931	[0.0071-0.0146] unit increase	Affymetrix [NR] (imputed)	N
862	chr7	36325560	36325561	rs196590	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	1,940 Japanese ancestry cases, 7,408 Japanese ancestry controls	4,071 Japanese ancestry cases, 54,470 Japanese ancestry controls	7p14.2	EEPD1	rs196590-C	NR	1E-6		1.118	[1.073-1.163]	Illumina [6627481] (imputed)	N
862	chr7	36339125	36339126	rs10848	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	7p14.2	EEPD1	rs10848-G	0.497422	7E-10		0.013858353	[0.0095-0.0183] unit decrease	Affymetrix [93095623] (imputed)	N
862	chr7	36339125	36339126	rs10848	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	7p14.2	EEPD1	rs10848-G	0.497395	2E-12		0.015688576	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
862	chr7	36339125	36339126	rs10848	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	7p14.2	EEPD1	rs10848-G	0.497461	6E-10		0.013847215	[0.0095-0.0182] unit decrease	Affymetrix [93095623] (imputed)	N
863	chr7	36446120	36446121	rs3735398	26969751	Parmar PG	2016-03-11	Circ Cardiovasc Genet	International Genome-Wide Association Study Consortium Identifies Novel Loci Associated With Blood Pressure in Children and Adolescents.	Systolic blood pressure	5,008 European ancestry prepubescent females, 5,082 European ancestry prepubescent males, 4,238 European ancestry pubescent females, 4,185 European ancestry pubescent males, 2,680 European ancestry post-pubescent females, 2,496 European ancestry post-pubescent males	NA	7p14.2	ANLN	rs3735398-?	NR	1E-7	(Puberty)	0.116	[0.073-0.159] unit increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
863	chr7	36446120	36446121	rs3735398	26969751	Parmar PG	2016-03-11	Circ Cardiovasc Genet	International Genome-Wide Association Study Consortium Identifies Novel Loci Associated With Blood Pressure in Children and Adolescents.	Systolic blood pressure	5,008 European ancestry prepubescent females, 5,082 European ancestry prepubescent males, 4,238 European ancestry pubescent females, 4,185 European ancestry pubescent males, 2,680 European ancestry post-pubescent females, 2,496 European ancestry post-pubescent males	NA	7p14.2	ANLN	rs3735398-?	NR	1E-7	(Male, Puberty)	0.159	[0.100-0.218] unit increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
863	chr7	36446511	36446512	rs55891665	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	7p14.2		rs55891665-?	NR	1E-9				NR [~ 8900000] (imputed)	N
863	chr7	36455476	36455477	rs10224902	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	7p14.2		rs10224902-?	NR	5E-17				NR [~ 8900000] (imputed)	N
863	chr7	36472452	36472453	rs10265169	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p14.2	NR	rs10265169-A	0.882275	3E-19				Affymetrix, Illumina [22063850] (imputed)	N
863	chr7	36472452	36472453	rs10265169	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	7p14.2	NR	rs10265169-A	0.883456	3E-20		0.026925	[0.021-0.033] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
863	chr7	36494564	36494565	rs10243181	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	7p14.2	ANLN	rs10243181-G	0.117468	4E-14		0.025981847	[0.019-0.033] unit increase	Affymetrix [93095623] (imputed)	N
863	chr7	36546068	36546069	rs7777593	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	7p14.2	AOAH	rs7777593-A	0.404	1E-6	(Weight change )	0.04	[NR] kg/y increase	Illumina [899892]	N
864	chr7	36610492	36610493	rs6948404	20205591	Pelak K	2010-04-15	J Infect Dis	Host determinants of HIV-1 control in African Americans.	HIV-1 viral setpoint	515 African American cases	NA	7p14.2	AOAH	rs6948404-?	0.07	3E-6				Illumina [1212217]	N
864	chr7	36626403	36626404	rs192686928	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	7p14.2	AOAH	rs192686928-C	0.00216563	7E-6		0.07072	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
864	chr7	36627323	36627324	rs74908120	33190678	Ho YYW	2020-10-01	Twin Res Hum Genet	Comparison of Genome-Wide Association Scans for Quantitative and Observational Measures of Human Hair Curvature.	Hair curvature (quantitative)	2,225 European ancestry individuals	NA	7p14.2	NR	rs74908120-?		4E-6		0.028	[0.016-0.04] unit increase	Illumina [7533529] (imputed)	N
864	chr7	36628760	36628761	rs2727797	31006051	Kharazmi M	2019-04-20	Calcif Tissue Int	A Genome-Wide Association Study of Bisphosphonate-Associated Atypical Femoral Fracture.	Atypical femoral fracture in phosphonate treatment	50 European ancestry cases, 1 Chilean ancestry case, 324 European ancestry controls	NA	7p14.2	AOAH	rs2727797-T	0.44	7E-6		3.142	[1.909-5.169]	Illumina [7585874] (imputed)	N
864	chr7	36672324	36672325	rs116561169	32141793	Garman L	2020-03-06	Ocul Immunol Inflamm	Genome-Wide Association Study of Ocular Sarcoidosis Confirms HLA Associations and Implicates Barrier Function and Autoimmunity in African Americans.	Ocular sarcoidosis	260 African American cases, 1,551 African American controls	NA	7p14.2	NR	rs116561169-G	NR	4E-6		3.404	[2.02-5.72]	Illumina [13976150] (imputed)	N
864	chr7	36685143	36685144	rs7794780	28300201	Hernandez-Pacheco N	2017-03-16	Sci Rep	Identification of a novel locus associated with skin colour in African-admixed populations.	Skin pigmentation	285 Puerto Rican individuals	373 African American individuals	7p14.2	NR	rs7794780-C	NR	2E-6	(Hispanic)	2.34	[3.29-1.39] unit decrease	Affymetrix [14000000] (imputed)	N
865	chr7	36719492	36719493	rs4236346	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Scarlet fever	6,812 European ancestry cases, 113,837 European ancestry controls	NA	7p14.2	NR	rs4236346-?	NR	8E-6		0.0888	[0.049-0.128] unit decrease	Illumina [at least 560000] (imputed)	N
865	chr7	36742885	36742886	rs6978327	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	7p14.2	NR	rs6978327-C	0.4111	5E-9		0.0233	[0.015-0.031] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
865	chr7	36751581	36751582	rs75145722	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		AOAH	rs75145722-?	NR	4E-9	(female)	0.773268	[NR] unit decrease	Affymetrix [NR] (imputed)	N
865	chr7	36786795	36786796	rs78158938	27936112	Kalsi G	2016-12-09	PLoS One	Genome-Wide Association of Heroin Dependence in Han Chinese.	Heroin dependence	370 Han Chinese ancestry cases, 134 Han Chinese ancestry controls		7p14.2	NR	rs78158938-?	0.90234	6E-6		4.93		Illumina [4009606] (imputed)	N
865	chr7	36806586	36806587	rs10279904	30306274	Shah RL	2018-10-10	Hum Genet	Genome-wide association studies for corneal and refractive astigmatism in UK Biobank demonstrate a shared role for myopia susceptibility loci.	Corneal astigmatism	Up to 86,335 European ancestry individuals		7p14.2	AOAH	rs10279904-C	0.987	2E-6		0.058	[0.056-0.06] dioptres decrease	NR [5901671] (imputed)	N
866	chr7	36902804	36902805	rs3807160	32690583	Cheng B	2020-07-20	G3 (Bethesda)	Genome-Wide Association Analysis Identified ANXA1 Associated with Shoulder Impingement Syndrome in UK Biobank Samples.	Shoulder impingement syndrome	7,252 European ancestry individuals	NA	7p14.2		rs3807160-G	NR	2E-6		1.24435	[1.15-1.33] unit increase	Affymetrix [825927] (imputed)	N
866	chr7	36917994	36917995	rs741301	17653210	Maeda S	2007-08-01	Kidney Int Suppl	Genetic variations associated with diabetic nephropathy and type II diabetes in a Japanese population.	Type 2 diabetes nephropathy	94 Japanese ancestry cases, 94 Japanese ancestry controls	NA	7p14.2	ELMO1	rs741301-?	NR	8E-6		2.67	[1.71-4.16]	NR [~ 80000]	N
866	chr7	36939321	36939322	rs59964204	28429243	Dudenkov TM	2017-04-20	Breast Cancer Res Treat	SLCO1B1 polymorphisms and plasma estrone conjugates in postmenopausal women with ER+ breast cancer: genome-wide association studies of the estrone pathway.	Plasma androstenedione levels in resected early stage-receptor positive breast cancer	707 European ancestry postmenopausal cases, 52 African ancestry postmenopausal cases, 15 Asian ancestry postmenopausal cases	NA	7p14.2	ELMO1	rs59964204-A	0.096	3E-7		0.45	[0.28-0.62] pg/mL decrease	Illumina [8203257] (imputed)	N
866	chr7	36952020	36952021	rs10488023	22747683	Eriksson N	2012-06-30	BMC Med Genet	Genetic variants associated with breast size also influence breast cancer risk.	Breast size	16,175 European ancestry female individuals	NA	7p14.2	ELMO1	rs10488023-G	0.142	8E-6		0.099	[0.056-0.142] cup size increase	Illumina [7422970] (imputed)	N
866	chr7	36958597	36958598	rs78185366	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Trunk fat mass	3,399 whole genome sequenced individuals, 12,838 European ancestry individuals	10,667 European ancestry individuals	7p14.2	ELMO1	rs78185366-T	0.996	4E-6		0.5606	[0.32-0.8] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
866	chr7	36958597	36958598	rs78185366	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body fat mass	3,399 whole genome sequenced individuals, 11,802 European ancestry individuals	10,670 European ancestry individuals	7p14.2	ELMO1	rs78185366-T	0.996	8E-6		0.4989	[0.28-0.72] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
866	chr7	36961319	36961320	rs13230047	22216198	Athanasiadis G	2011-12-28	PLoS One	A genome-wide association study of the Protein C anticoagulant pathway.	Anticoagulant levels	397 European ancestry individuals from 21 families	NA	7p14.2	ELMO1	rs13230047-?	NR	8E-6	(PC)			Illumina [283437]	N
867	chr7	37046419	37046420	rs17170827	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	7p14.2		rs17170827-C	0.816	2E-10		0.009	[0.007-0.011] unit decrease	NR [NR] (imputed)	N
867	chr7	37046419	37046420	rs17170827	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	7p14.2	NR	rs17170827-T	0.18	1E-7		0.00745718	[0.0047-0.0102] unit increase	NR [9732723] (imputed)	N
867	chr7	37067394	37067395	rs10488029	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	7p14.2	NR	rs10488029-G	0.10578790637539	4E-6	(IGP35)	0.2329	[0.13-0.33] unit increase	Illumina [~ 2500000] (imputed)	N
867	chr7	37076853	37076854	rs10488031	20031603	Marroni F	2009-08-01	Circ Cardiovasc Genet	A genome-wide association scan of RR and QT interval duration in 3 European genetically isolated populations: the EUROSPAN project.	QT interval	2,325 European ancestry individuals	NA	7p14.2	ELMO1	rs10488031-A	0.07	2E-6		0.26	[0.16-0.36] unit decrease	Illumina [~ 318327]	N
867	chr7	37085052	37085053	rs17170849	21685187	Siedlinski M	2011-06-16	Thorax	Genome-wide association study of smoking behaviours in patients with COPD.	Lifetime average cigarettes per day in chronic obstructive pulmonary disease	3,440 European ancestry cases	NA	7p14.2	ELMO1	rs17170849-C	0.02	4E-6		0.265	unit increase	Illumina [~ 6300000] (imputed)	N
868	chr7	37160163	37160164	rs62445788	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Ruminococcus A sp000432335 abundance in stool	5,959 Finnish ancestry individuals	NA	7p14.1		rs62445788-A	0.0265268	1E-8		0.143609	[0.094-0.193] unit increase	Illumina [7980478] (imputed)	N
869	chr7	37236580	37236581	rs10224438	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	7p14.1		rs10224438-G	0.22	1E-8		5.73	z score increase	Affymetrix [9061022] (imputed)	N
869	chr7	37266351	37266352	rs4723619	19176441	Yang JJ	2009-01-28	JAMA	Genome-wide interrogation of germline genetic variation associated with treatment response in childhood acute lymphoblastic leukemia.	Response to treatment for acute lymphoblastic leukemia	356 European ancestry cases, 53 Black cases, 78 cases	NA	7p14.1	ELMO1	rs4723619-C	NR	3E-6		3.01	[1.50-6.03]	Affymetrix [476796]	N
869	chr7	37268391	37268392	rs139827288	34162658	Quinn MC	2021-06-23	Cancer Epidemiol Biomarkers Prev	Identification of a locus near ULK1 associated with progression-free survival in ovarian cancer.	Progression free survival in epithelial ovarian cancer	5,596 European ancestry individuals	NA	7p14.1	NR	rs139827288-T		9E-6		0.3111	[0.17-0.45] unit increase	Illumina [12770451] (imputed)	N
870	chr7	37365195	37365196	rs2392492	23535033	Sherva R	2013-03-24	Alzheimers Dement	Genome-wide association study of the rate of cognitive decline in Alzheimer's disease.	Alzheimer's disease (cognitive decline)	303 European ancestry cases		7p14.1	ELMO1	rs2392492-?	0.04	1E-6		0.32	unit decrease	Illumina [NR] (imputed)	N
870	chr7	37373178	37373179	rs73112661	22961000	Liu JZ	2012-10-01	Nat Genet	Dense fine-mapping study identifies new susceptibility loci for primary biliary cirrhosis.	Primary biliary cirrhosis	2,861 British and Irish ancestry cases, 8,514 British and Irish ancestry controls	NA	7p14.1	ELMO1	rs73112661-G	0.17	2E-7		1.22		Illumina [237619] (imputed)	N
870	chr7	37374509	37374510	rs6974491	21399635	Mells GF	2011-03-13	Nat Genet	Genome-wide association study identifies 12 new susceptibility loci for primary biliary cirrhosis.	Primary biliary cholangitis	1,840 European ancestry cases, 5,163 European ancestry controls and (Liu et al)	620 European ancestry cases, 2,514 European ancestry controls	7p14.1	intergenic	rs6974491-A	0.17	4E-8		1.25	[1.16-1.36]	Illumina [507467]	N
870	chr7	37374509	37374510	rs6974491	20190752	Dubois PC	2010-02-28	Nat Genet	Multiple common variants for celiac disease influencing immune gene expression.	Celiac disease	4,533 European ancestry cases, 10,750 European ancestry controls	4,918 European ancestry cases, 5,684 European ancestry controls	7p14.1	ELMO1	rs6974491-A	0.17	2E-7		1.14	[1.09-1.20]	Illumina [292387]	N
870	chr7	37382464	37382465	rs60600003	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	7p14.1		rs60600003-G	NR	1E-9		0.0241	[0.016-0.032] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
870	chr7	37382464	37382465	rs60600003	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	7p14.1		rs60600003-G	NR	1E-21		0.028	[0.022-0.034] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
870	chr7	37382464	37382465	rs60600003	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	7p14.1		rs60600003-T	0.899	2E-14				Affymetrix [10369434] (imputed)	N
870	chr7	37382464	37382465	rs60600003	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	8,021 European ancestry cases, 16,489 European ancestry controls	NA	7p14.1		rs60600003-G	NR	5E-13		0.253264	[0.18-0.32] unit increase	NR [5054572] (imputed)	N
870	chr7	37382464	37382465	rs60600003	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	7p14.1	ELMO1	rs60600003-G	0.100559	2E-12		0.026132282	[0.019-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
870	chr7	37382464	37382465	rs60600003	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	7p14.1	ELMO1	rs60600003-G	0.100555	1E-14		0.028530594	[0.021-0.036] unit increase	Affymetrix [93095623] (imputed)	N
870	chr7	37382464	37382465	rs60600003	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	7p14.1	ELMO1	rs60600003-G	0.100572	3E-28		0.040686198	[0.033-0.048] unit increase	Affymetrix [93095623] (imputed)	N
870	chr7	37382464	37382465	rs60600003	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	7p14.1	ELMO1	rs60600003-G	0.100567	5E-32		0.04352671	[0.036-0.051] unit increase	Affymetrix [93095623] (imputed)	N
870	chr7	37382464	37382465	rs60600003	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p14.1	NR	rs60600003-G	0.0974923	1E-20				Affymetrix, Illumina [23472807] (imputed)	N
870	chr7	37382464	37382465	rs60600003	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	7p14.1	NR	rs60600003-G	0.100013	1E-20		0.029505	[0.023-0.036] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
870	chr7	37382464	37382465	rs60600003	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p14.1	NR	rs60600003-G	0.0978864	6E-36				Affymetrix, Illumina [19872809] (imputed)	N
870	chr7	37382464	37382465	rs60600003	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	7p14.1	NR	rs60600003-G	0.100334	3E-38		0.042906	[0.036-0.049] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
870	chr7	37382464	37382465	rs60600003	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	7p14.1	ELMO1	rs60600003-G	NR	5E-19		1.1460004	NR	Affymetrix, Illumina [8278136] (imputed)	N
870	chr7	37382464	37382465	rs60600003	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	7p14.1		rs60600003-?	NR	3E-9				NR [~ 8900000] (imputed)	N
870	chr7	37382464	37382465	rs60600003	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	7p14.1		rs60600003-?	NR	8E-35				NR [~ 8900000] (imputed)	N
870	chr7	37382464	37382465	rs60600003	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Autoimmune traits	approximately 459,000 European ancestry individuals	NA	7p14.1		rs60600003-?	NR	1E-11				NR [~ 8900000] (imputed)	N
870	chr7	37382464	37382465	rs60600003	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Systemic sclerosis	3,477 European ancestry cases, 22,308 European ancestry controls	NA	7p14.1	ELMO1	rs60600003-G	0.097	2E-6		1.2531207		Illumina [252970]	N
870	chr7	37382464	37382465	rs60600003	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Celiac disease	11,489 European ancestry cases, 22,308 European ancestry controls	NA	7p14.1	ELMO1	rs60600003-G		4E-13		1.2354879		Illumina [252970]	N
870	chr7	37382464	37382465	rs60600003	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Autoimmune traits (pleiotropy)	11,489 European ancestry cases with celiac disease, 15,523 European ancestry cases with rheumatoid arthritis, 3,477 European ancestry cases with systemic sclerosis, 6,670 European ancestry cases with type 1 diabetes, 22,308 European ancestry controls	NA	7p14.1	ELMO1	rs60600003-G	NA	4E-13				Illumina [252970]	N
870	chr7	37382464	37382465	rs60600003	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	7p14.1	ELMO1	rs60600003-G	0.1011	6E-13		0.04305428	[0.031-0.055] unit decrease	Affymetrix [~ 2500000] (imputed)	N
870	chr7	37382464	37382465	rs60600003	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	7p14.1	ELMO1	rs60600003-G	0.1011	2E-13		0.04377102	[0.032-0.055] unit increase	Affymetrix [~ 2500000] (imputed)	N
870	chr7	37382464	37382465	rs60600003	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	7p14.1	ELMO1	rs60600003-G	0.1011	1E-13		0.04429724	[0.033-0.056] unit increase	Affymetrix [~ 2500000] (imputed)	N
870	chr7	37382464	37382465	rs60600003	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	7p14.1	ELMO1	rs60600003-C	0.1	6E-14		1.15		Illumina [161311]	N
870	chr7	37386236	37386237	rs2700987	26626624	Stuart PE	2015-11-28	Am J Hum Genet	Genome-wide Association Analysis of Psoriatic Arthritis and Cutaneous Psoriasis Reveals Differences in Their Genetic Architecture.	Psoriasis vulgaris	4,007 European ancestry cases, 4,934 European ancestry controls	up to 9,075 European ancestry cases, up to European ancestry 12,726 controls	7p14.1	ELMO1	rs2700987-A	NR	3E-6		1.107	NR	Illumina [up to 11532644] (imputed)	N
870	chr7	37386236	37386237	rs2700987	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Psoriasis	4,212 European ancestry cases, 8,032 European ancestry controls	NA	7p14.1	ELMO1	rs2700987-A	NR	7E-8		1.174	[1.14-1.209]	Affymetrix, Illumina, Perlegen [up to 5493100] (imputed)	N
870	chr7	37386236	37386237	rs2700987	23143594	Tsoi LC	2012-12-01	Nat Genet	Identification of 15 new psoriasis susceptibility loci highlights the role of innate immunity.	Psoriasis	10,588 European ancestry cases, 22,806 European ancestry controls	NA	7p14.1	ELMO1	rs2700987-A	0.564	4E-9		1.11		Illumina [111236] (imputed)	N
870	chr7	37389309	37389310	rs2724013	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Inflammatory skin disease	2,079 European ancestry atopic dermatitis cases, 4,212 European ancestry psoriasis cases, 11,899 European ancestry controls	NA	7p14.1	ELMO1	rs2724013-?	NR	3E-9	(Psoriasis)			Affymetrix, Illumina [~ 5200000]	N
870	chr7	37394378	37394379	rs2700983	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	7p14.1	ELMO1	rs2700983-?	NR	4E-8		0.021642402	[0.014-0.029] unit decrease	Illumina [27896057] (imputed)	N
870	chr7	37395850	37395851	rs60343814	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	7p14.1	ELMO1	rs60343814-A	0.183486	4E-27		0.031792507	[0.026-0.038] unit increase	Affymetrix [93095623] (imputed)	N
870	chr7	37398112	37398113	rs4720244	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	7p14.1	ELMO1	rs4720244-C	0.64	4E-10		0.42	[0.28-0.56] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
870	chr7	37398112	37398113	rs4720244	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	7p14.1	ELMO1	rs4720244-C	0.645	8E-8		0.3728	[0.24-0.51] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
870	chr7	37400569	37400570	rs2700976	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	7p14.1	GPR141	rs2700976-?	NR	4E-7	(hippuric acid)	0.23466355	[0.14-0.33] unit decrease	Affymetrix [at least 2500000] (imputed)	N
870	chr7	37402489	37402490	rs111796602	31263063	Dufek S	2019-07-01	J Am Soc Nephrol	Genetic Identification of Two Novel Loci Associated with Steroid-Sensitive Nephrotic Syndrome.	Childhood steroid-sensitive nephrotic syndrome	422 European ancestry cases, 5,642 European ancestry controls	NA	7p14.1	NR	rs111796602-C	0.1	3E-6		1.63	[1.34-1.99]	Illumina [5216266] (imputed)	N
870	chr7	37403646	37403647	rs77972791	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	7p14.1	ELMO1	rs77972791-G	0.105	7E-15		0.04533372	[0.034-0.057] unit increase	Affymetrix [~ 2500000] (imputed)	N
870	chr7	37403646	37403647	rs77972791	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	7p14.1	ELMO1	rs77972791-G	0.105	5E-15		0.04554558	[0.034-0.057] unit increase	Affymetrix [~ 2500000] (imputed)	N
870	chr7	37404977	37404978	rs77778931	25920553	Coleman C	2015-04-29	Eur J Hum Genet	Common polygenic variation in coeliac disease and confirmation of ZNF335 and NIFA as disease susceptibility loci.	Celiac disease	425 Irish ancestry cases, 453 Irish ancestry controls	11,812 European ancestry cases, 229 Indian ancestry cases, 11,837 European ancestry controls, 391 Indian ancestry controls	7p14.1	ELMO1	rs77778931-?	NR	2E-8		0.1616	unit increase	Illumina [up to 143074]	N
870	chr7	37409939	37409939	rs202157095	32581359	Saevarsdottir S	2020-06-24	Nature	FLT3 stop mutation increases FLT3 ligand level and risk of autoimmune thyroid disease.	Autoimmune thyroid disease	30,234 European ancestry cases, 724,172 European ancestry controls	NA	7p14.1	ELMO1	rs202157095-TGAAAAGG	0.103	1E-11		1.1	[NR]	Affymetrix, Illumina [42900000] (imputed)	N
870	chr7	37411757	37411758	rs6960995	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	7p14.1	ELMO1	rs6960995-T	0.51751	4E-9		0.013022628	[0.0087-0.0174] unit decrease	Affymetrix [93095623] (imputed)	N
870	chr7	37414536	37414537	rs1987067	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,931 Sub-Saharan African ancestry males	NA	7p14.1		rs1987067-C	0.804369	3E-6		0.0164307	[0.0097-0.0232] unit increase	Illumina [13900000] (imputed)	N
870	chr7	37423213	37423214	rs2701013	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	7p14.1	NR	rs2701013-T	0.6676	3E-7		0.0098	[0.0061-0.0135] unit decrease	NR [~ 27400000] (imputed)	N
870	chr7	37424239	37424240	rs10279209	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	7p14.1		rs10279209-A	NR	2E-10		0.0756	[0.052-0.099] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
870	chr7	37424239	37424240	rs10279209	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	7p14.1	ELMO1	rs10279209-A	0.134841	4E-10		0.08350335	[0.057-0.11] unit increase	Affymetrix [7288503] (imputed)	N
870	chr7	37427288	37427289	rs74830391	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Secreting CD4 regulatory T cell %CD4+ T cell	3,437 Sardinian (founder/genetic isolate) ancestry individuals	NA	7p14.1		rs74830391-T	0.15246	4E-8		0.1999	[0.13-0.27] unit increase	Illumina [18353565] (imputed)	N
870	chr7	37427288	37427289	rs74830391	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Activated & secreting CD4 regulatory T cell %CD4+ T cell	3,437 Sardinian (founder/genetic isolate) ancestry individuals	NA	7p14.1		rs74830391-T	0.15246	4E-8		0.1992	[0.13-0.27] unit increase	Illumina [18353565] (imputed)	N
870	chr7	37427288	37427289	rs74830391	26546613	Gutierrez-Achury J	2016-01-01	Hum Mol Genet	Functional implications of disease-specific variants in loci jointly associated with coeliac disease and rheumatoid arthritis.	Celiac disease and Rheumatoid arthritis	371 South Asian ancestry celiac disease cases, 3,138 European ancestry celiac disease cases,  4,418 European ancestry rheumatoid arthritis cases,  509 South Asian ancestry celiac disease controls, 2,473 European ancestry celiac disease controls, 3,300 European ancestry rheumatoid arthritis controls, 8,872 celiac disease cases, 9,401 rheumatoid arthritis cases, 4,845 celiac disease controls, 9,627 rheumatoid arthritis controls	NA	7p14.1	ELMO1	rs74830391-?	NR	3E-9		1.14		Illumina [109572]	N
870	chr7	37427350	37427351	rs75351767	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis	up to 13,838 European ancestry cases, up to 33,742 European ancestry controls	NA	7p14.1	ELMO1	rs75351767-G	NR	3E-7		1.1604		Illumina [129464] (imputed)	N
870	chr7	37431558	37431559	rs10230459	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	8,021 European ancestry cases, 16,489 European ancestry controls, 2,495 East Asian ancestry cases, 4,283 East Asian ancestry controls	NA	7p14.1		rs10230459-G	NR	3E-10		0.212495	[0.15-0.28] unit increase	NR [2787054] (imputed)	N
870	chr7	37435718	37435721	rs148463354	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	7p14.1	ELMO1	rs148463354-T	0.042493	3E-12		0.04049512	[0.029-0.052] unit decrease	Affymetrix [93095623] (imputed)	N
870	chr7	37435718	37435721	rs148463354	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	7p14.1	ELMO1	rs148463354-T	0.042477	1E-14		0.046416793	[0.035-0.058] unit increase	Affymetrix [93095623] (imputed)	N
870	chr7	37436853	37436854	rs11984075	21383967	Zhernakova A	2011-02-24	PLoS Genet	Meta-analysis of genome-wide association studies in celiac disease and rheumatoid arthritis identifies fourteen non-HLA shared loci.	Celiac disease or Rheumatoid arthritis	4,533 European ancestry celiac disease cases, 5,539 European ancestry rheumatoid arthritis cases, 27,981 European ancestry controls	2,169 European ancestry celiac disease cases, 2,845 European ancestry rheumatoid arthritis cases, 7,199 European ancestry controls	7p14.1	ELMO1	rs11984075-G	NR	5E-8				Illumina [472854]	N
870	chr7	37437968	37437969	rs12669698	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	7p14.1	NR	rs12669698-?	NR	2E-6		969.0496	NR unit increase	Illumina [2379855]	N
870	chr7	37441259	37441260	rs11765583	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	7p14.1	ELMO1	rs11765583-A	0.1961	6E-15		0.0359535	[0.027-0.045] unit increase	Affymetrix [~ 2500000] (imputed)	N
870	chr7	37445819	37445820	rs4565373	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	7p14.1	ELMO1	rs4565373-G	NR	9E-9		0.0164196	[0.011-0.022] unit increase	Affymetrix [319769] (imputed)	N
870	chr7	37445819	37445820	rs4565373	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	7p14.1	ELMO1	rs4565373-G	NR	1E-8		0.0163648	[0.011-0.022] unit increase	Affymetrix [319769] (imputed)	N
870	chr7	37450877	37450878	rs75532300	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	7p14.1		rs75532300-A	NR	4E-13		0.0245	[0.018-0.031] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
870	chr7	37452112	37452113	rs11771053	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	7p14.1	ELMO1	rs11771053-T	0.198	1E-11		0.03095442	[0.022-0.04] unit increase	Affymetrix [~ 2500000] (imputed)	N
870	chr7	37457358	37457359	rs7808005	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	7p14.1	ELMO1	rs7808005-T	0.278408	2E-18		0.022911027	[0.018-0.028] unit increase	Affymetrix [93095623] (imputed)	N
870	chr7	37457358	37457359	rs7808005	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p14.1	NR	rs7808005-C	0.721227	2E-42				Affymetrix, Illumina [17210439] (imputed)	N
870	chr7	37457358	37457359	rs7808005	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	7p14.1	NR	rs7808005-C	0.720952	4E-44		0.029816	[0.026-0.034] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
870	chr7	37461508	37461509	rs11767774	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p14.1	NR	rs11767774-G	0.239724	8E-16				Affymetrix, Illumina [24588908] (imputed)	N
870	chr7	37465371	37465372	rs1731993	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	7p14.1	ELMO1	rs1731993-A	0.697462	8E-36		0.034741204	[0.029-0.04] unit increase	Affymetrix [93095623] (imputed)	N
870	chr7	37468888	37468889	rs28628397	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	7p14.1	ELMO1	rs28628397-A	0.248948	3E-44		0.04102788	[0.035-0.047] unit increase	Affymetrix [93095623] (imputed)	N
871	chr7	37556236	37556237	rs1364731	34847907	Tegelberg P	2021-11-30	BMC Oral Health	Genome-wide association study of periodontal pocketing in Finnish adults.	Periodontal pocket (adjusted for age and sex)	3,906 Finnish ancestry individuals	NA	7p14.1		rs1364731-T	0.37	4E-6		0.12	[0.069-0.171] number of affected teeth increase	Illumina [NR] (imputed)	N
871	chr7	37562367	37562368	rs1425132	23648065	Low SK	2013-05-04	Cancer Sci	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (paclitaxel + carboplatin)	150 Japanese ancestry cases, 166 Japanese ancestry controls	NA	7p14.1	LOC442668	rs1425132-T	0.666	5E-6	(Recessive model)	1.43	[1.013-2.017]	Illumina [733202]	N
871	chr7	37598701	37598702	rs1425126	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	7p14.1	GPR141	rs1425126-?	NR	6E-7	(CE 18:3)	0.16536331	[0.1-0.23] unit increase	Affymetrix [at least 2500000] (imputed)	N
872	chr7	37637237	37637238	rs80195177	28247064	Deming Y	2017-02-28	Acta Neuropathol	Genome-wide association study identifies four novel loci associated with Alzheimer's endophenotypes and disease modifiers.	Cerebrospinal fluid AB1-42 levels	3,146 individuals	NA	7p14.1	ELMO1, GPR141	rs80195177-A	0.072	7E-6		0.036	[0.02-0.052] unit increase	Illumina [7358575] (imputed)	N
872	chr7	37651803	37651804	rs564512580	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	7p14.1		rs564512580-?	NR	6E-14		0.152658	[0.11-0.19] unit decrease	Affymetrix [20259828] (imputed)	N
872	chr7	37735630	37735631	rs575416182	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	7p14.1		rs575416182-?	NR	2E-22		0.211863	[0.17-0.26] unit decrease	Affymetrix [20259828] (imputed)	N
872	chr7	37739900	37739901	rs17207326	28247064	Deming Y	2017-02-28	Acta Neuropathol	Genome-wide association study identifies four novel loci associated with Alzheimer's endophenotypes and disease modifiers.	Cerebrospinal fluid AB1-42 levels	3,146 individuals	NA	7p14.1	ELMO1, GPR141	rs17207326-A	0.072	5E-6		0.037	[0.021-0.053] unit increase	Illumina [7358575] (imputed)	N
872	chr7	37742124	37742125	rs10275014	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	7p14.1	TXNDC3	rs10275014-?	NR	3E-6	(CE 18:3)	0.15589567	[0.091-0.221] unit increase	Affymetrix [at least 2500000] (imputed)	N
872	chr7	37746568	37746569	rs2392510	25672891	Shimizu S	2015-02-11	J Dent Res	A genome-wide association study of periodontitis in a Japanese population.	Periodontitis	1,593 Japanese ancestry cases, 7,980 Japanese ancestry controls	1,167 Japanese ancestry cases, 7,178 Japanese ancestry controls	7p14.1	GPR141, NME8	rs2392510-T	0.59	4E-6		1.15	[1.09-1.22]	Illumina [597434]	N
873	chr7	37757555	37757556	rs6951258	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	7p14.1	GPR141	rs6951258-G	0.015	4E-6	(RANTES )	0.03	[NR] pg/mL increase	Illumina [899892]	N
873	chr7	37802730	37802731	rs56114331	33455090	Bing N	2021-01-17	Arthritis Rheumatol	Contribution of a European-Prevalent Variant near CD83 and an East Asian-Prevalent Variant near IL17RB to Herpes Zoster Risk in Tofacitinib Treatment: Results of Genome-Wide Association Study Meta-Analyses.	Response to tofacitinib treatment in psoriasis (herpes zoster)(time to event)	56 European ancestry cases, 1,543 European ancestry controls, 10 East Asian ancestry cases, 80 East Asian ancestry controls, 4 Hispanic cases, 245 Hispanic controls	NA	7p14.1	GPR141	rs56114331-?		2E-6	(EA)	5.85	[5.12-6.58]	Illumina [up to 8000000] (imputed)	N
873	chr7	37802730	37802731	rs56114331	33455090	Bing N	2021-01-17	Arthritis Rheumatol	Contribution of a European-Prevalent Variant near CD83 and an East Asian-Prevalent Variant near IL17RB to Herpes Zoster Risk in Tofacitinib Treatment: Results of Genome-Wide Association Study Meta-Analyses.	Response to tofacitinib treatment (herpes zoster)(time to event)	165 European ancestry rheumatoid arthritis cases, 56 East Asian ancestry rheumatoid arthritis cases, 23 Hispanic rheumatoid arthritis cases, 56 European ancestry psoriasis cases, 10 East Asian ancestry psoriasis cases, 4 Hispanic psoriasis cases, 3,566 European ancestry controls, 317 East Asian ancestry controls, 644 Hispanic controls	NA	7p14.1	GPR141	rs56114331-?		6E-9		3.7	[2.37-5.73]	Illumina [up to 8000000] (imputed)	N
873	chr7	37802730	37802731	rs56114331	33455090	Bing N	2021-01-17	Arthritis Rheumatol	Contribution of a European-Prevalent Variant near CD83 and an East Asian-Prevalent Variant near IL17RB to Herpes Zoster Risk in Tofacitinib Treatment: Results of Genome-Wide Association Study Meta-Analyses.	Response to tofacitinib treatment (herpes zoster)	165 European ancestry rheumatoid arthritis cases, 56 East Asian ancestry rheumatoid arthritis cases, 23 Hispanic rheumatoid arthritis cases, 56 European ancestry psoriasis cases, 10 East Asian ancestry psoriasis cases, 4 Hispanic psoriasis cases, 3,566 European ancestry controls, 317 East Asian ancestry controls, 644 Hispanic controls	NA	7p14.1	GPR141	rs56114331-?		2E-6		3.4	[2.05-5.49]	Illumina [up to 8000000] (imputed)	N
873	chr7	37829727	37829728	rs10271455	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	7p14.1		rs10271455-?	NR	9E-17				NR [~ 8900000] (imputed)	N
873	chr7	37841533	37841534	rs2718058	31473137	Moreno-Grau S	2019-08-13	Alzheimers Dement	Genome-wide association analysis of dementia and its clinical endophenotypes reveal novel loci associated with Alzheimer's disease and three causality networks: The GR@ACE project.	Alzheimer's disease	4,120 Spanish ancestry cases, 17,008 cases, 3,289 Spanish ancestry controls, 37,154 controls	1,943 Spanish ancestry cases, 8,572 cases, 3,016 Spanish ancestry controls, 11,312 controls	7p14.1	NME8	rs2718058-?	NR	2E-6		1.0638298	[1.10-1.03]	Affymetrix [up to 7055881] (imputed)	N
873	chr7	37841533	37841534	rs2718058	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease (late onset)	24,087 European ancestry cases, 55,058 European ancestry controls	NA	7p14.1	NME8	rs2718058-G	NR	1E-6		4.87	NR z-score decrease	Illumina [up to 9862738] (imputed)	N
873	chr7	37841533	37841534	rs2718058	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	7p14.1	NR	rs2718058-?	NR	2E-6		1.0383158		Affymetrix [7795605] (imputed)	N
873	chr7	37841533	37841534	rs2718058	24162737	Lambert JC	2013-10-27	Nat Genet	Meta-analysis of 74,046 individuals identifies 11 new susceptibility loci for Alzheimer's disease.	Alzheimer's disease (late onset)	17,008 European ancestry cases, 37,154 European ancestry controls	8,572 European ancestry cases, 11,312 European ancestry controls	7p14.1	NME8	rs2718058-A	0.627	5E-9		1.0753	[1.05-1.11]	Illumina [7055881] (imputed)	N
874	chr7	37887287	37887288	rs548948244	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	7p14.1		rs548948244-?	NR	9E-26		0.189802	[0.15-0.23] unit decrease	Affymetrix [20259828] (imputed)	N
874	chr7	37938421	37938422	rs10226308	22504420	Estrada K	2012-04-15	Nat Genet	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Lumbar spine bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	7p14.1	TXNDC3	rs10226308-A	0.84	6E-13		0.06	[NR] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
874	chr7	37944374	37944375	rs17236800	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	7p14.1		rs17236800-?	NR	7E-85		0.0515994	[0.046-0.057] unit decrease	Affymetrix [20259828] (imputed)	N
874	chr7	37944374	37944375	rs17236800	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	7p14.1	SFRP4	rs17236800-A	0.814408	1E-19	(women)	0.0518548	[0.04-0.063] unit decrease	NR [17166351] (imputed)	N
874	chr7	37944374	37944375	rs17236800	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	7p14.1	SFRP4	rs17236800-A	0.81318	1E-31		0.0498673	[0.041-0.058] unit decrease	NR [17166351] (imputed)	N
874	chr7	37944374	37944375	rs17236800	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	7p14.1	SFRP4	rs17236800-A	0.811773	1E-14	(men)	0.0505899	[0.038-0.063] unit decrease	NR [17166351] (imputed)	N
874	chr7	37947817	37947818	rs10264106	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	7p14.1	SFRP4	rs10264106-A	0.81333	2E-114		0.0538664	[0.049-0.059] unit decrease	NR [13737936] (imputed)	N
874	chr7	37947817	37947818	rs10264106	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	7p14.1		rs10264106-?	NR	8E-93				NR [~ 8900000] (imputed)	N
874	chr7	37947817	37947818	rs10264106	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	7p14.1		rs10264106-?	NR	6E-85		0.0516466	[0.046-0.057] unit decrease	Affymetrix [20259828] (imputed)	N
874	chr7	37971912	37971913	rs2598109	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SFRP4	5,362 Icelandic ancestry individuals	NA	7p14.1		rs2598109-C	0.1559	9E-26		0.268357	[0.22-0.32] unit increase	Illumina [7506463] (imputed)	N
874	chr7	37973013	37973014	rs2598107	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7p14.1		rs2598107-?	NR	2E-21				NR [~ 8900000] (imputed)	N
874	chr7	37973013	37973014	rs2598107	28886342	Ng M	2017-09-07	Am J Hum Genet	A Genome-wide Association Study of Dupuytren Disease Reveals 17 Additional Variants Implicated in Fibrosis.	Dupuytren's disease	3,871 European ancestry cases, 4,686 European ancestry controls	4,041 European and unknown ancestry cases, 8,251 European and unknown ancestry controls	7p14.1	SFRP4, EPDR1	rs2598107-T	0.447	2E-44		1.477	[1.399-1.56]	Illumina [238825]	N
874	chr7	37973123	37973124	rs75474297	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	7p14.1	SFRP4	rs75474297-T	0.855	2E-18	(SFRP4, 9284_25_3)	0.30191296	[0.23-0.37] unit decrease	Illumina [> 1000000] (imputed)	N
874	chr7	37981960	37981961	rs2472660	34111113	Green HD	2021-06-10	PLoS Genet	A genome-wide association study identifies 5 loci associated with frozen shoulder and implicates diabetes as a causal risk factor.	Frozen shoulder	627,998 European ancestry individuals	NA	7p14.1	NR	rs2472660-C	0.355	2E-8		0.93	[0.95-0.90]	NR [16689279] (imputed)	N
874	chr7	37985009	37985010	rs1124268	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	7p14.1	NR	rs1124268-A	0.1849	1E-8	(European)	0.0493	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
874	chr7	37985997	37985998	rs2598095	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	7p14.1		rs2598095-?	NR	3E-17		0.0168019	[0.013-0.021] unit increase	Affymetrix [20259828] (imputed)	N
874	chr7	37986331	37986332	rs2167267	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Lateral ventricle volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	7p14.1	EPDR1	rs2167267-?		6E-6				Illumina [4322238] (imputed)	N
874	chr7	37988310	37988311	rs3816415	27064256	Khor CC	2016-04-04	Nat Genet	Genome-wide association study identifies five new susceptibility loci for primary angle closure glaucoma.	Glaucoma (primary angle closure)	5,612 East Asian ancestry cases, 12,451 East Asian ancestry controls, 337 Indian ancestry cases, 2,538 Indian ancestry controls, 576 European ancestry cases, 4,940 European ancestry controls	430 European ancestry cases, 3,133 European ancestry controls, 90 Nepalese ancestry cases, 205 Nepalese ancestry controls, 2,340 East Asian ancestry cases, 3,865 East Asian ancestry controls, 628 South Asian ancestry cases, 552 South Asian ancestry controls, 99 Latin American cases, 224 Latin American controls, 391 Saudi Arabian ancestry cases, 1,659 Saudi Arabian ancestry controls	7p14.1	EPDR1	rs3816415-A		7E-11	(Asian)	1.21	[NR]	Illumina [5245080] (imputed)	N
874	chr7	37988310	37988311	rs3816415	27064256	Khor CC	2016-04-04	Nat Genet	Genome-wide association study identifies five new susceptibility loci for primary angle closure glaucoma.	Glaucoma (primary angle closure)	5,612 East Asian ancestry cases, 12,451 East Asian ancestry controls, 337 Indian ancestry cases, 2,538 Indian ancestry controls, 576 European ancestry cases, 4,940 European ancestry controls	430 European ancestry cases, 3,133 European ancestry controls, 90 Nepalese ancestry cases, 205 Nepalese ancestry controls, 2,340 East Asian ancestry cases, 3,865 East Asian ancestry controls, 628 South Asian ancestry cases, 552 South Asian ancestry controls, 99 Latin American cases, 224 Latin American controls, 391 Saudi Arabian ancestry cases, 1,659 Saudi Arabian ancestry controls	7p14.1	EPDR1	rs3816415-A		6E-15		1.24	[NR]	Illumina [5245080] (imputed)	N
874	chr7	37988310	37988311	rs3816415	27064256	Khor CC	2016-04-04	Nat Genet	Genome-wide association study identifies five new susceptibility loci for primary angle closure glaucoma.	Glaucoma (primary angle closure)	5,612 East Asian ancestry cases, 12,451 East Asian ancestry controls, 337 Indian ancestry cases, 2,538 Indian ancestry controls, 576 European ancestry cases, 4,940 European ancestry controls	430 European ancestry cases, 3,133 European ancestry controls, 90 Nepalese ancestry cases, 205 Nepalese ancestry controls, 2,340 East Asian ancestry cases, 3,865 East Asian ancestry controls, 628 South Asian ancestry cases, 552 South Asian ancestry controls, 99 Latin American cases, 224 Latin American controls, 391 Saudi Arabian ancestry cases, 1,659 Saudi Arabian ancestry controls	7p14.1	EPDR1	rs3816415-A		2E-6	(EA)	1.42	[NR]	Illumina [5245080] (imputed)	N
874	chr7	37989094	37989095	rs16879765	28886342	Ng M	2017-09-07	Am J Hum Genet	A Genome-wide Association Study of Dupuytren Disease Reveals 17 Additional Variants Implicated in Fibrosis.	Dupuytren's disease	3,871 European ancestry cases, 4,686 European ancestry controls	4,041 European and unknown ancestry cases, 8,251 European and unknown ancestry controls	7p14.1	SFRP4, EPDR1	rs16879765-T	0.178	3E-81		1.877	[1.759-2.002]	Illumina [238825]	N
874	chr7	37989094	37989095	rs16879765	21732829	Dolmans GH	2011-07-06	N Engl J Med	Wnt signaling and Dupuytren's disease.	Dupuytren's disease	856 European ancestry cases, 2,836 European ancestry controls	1,298 European ancestry cases, 7,136 European ancestry controls	7p14.1	EPDR1, SFRP4	rs16879765-A	0.19	6E-39		1.98	[1.78-2.18]	Illumina [234939]	N
874	chr7	37989774	37989775	rs1450851	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	7p14.1	EPDR1	rs1450851-T	0.352331	9E-13		0.0142289	[0.01-0.018] unit increase	NR [13737936] (imputed)	N
874	chr7	38004405	38004406	rs1668357	23049088	Meng W	2012-10-09	Invest Ophthalmol Vis Sci	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		7p14.1	intergenic	rs1668357-?	0.82	4E-8			[NR]	Affymetrix, Illumina [152234]	N
875	chr7	38019379	38019380	rs17171238	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	7p14.1	NR	rs17171238-?	NR	2E-10				Affymetrix [NR]	N
875	chr7	38019489	38019490	rs1839588	33430342	Younes N	2021-01-07	J Pers Med	A Whole-Genome Sequencing Association Study of Low Bone Mineral Density Identifies New Susceptibility Loci in the Phase I Qatar Biobank Cohort.	Bone mineral density (pelvis)	3,000 Qatari ancestry individuals	NA	7p14.1		rs1839588-?	NR	2E-8				Illumina [1084750]	N
875	chr7	38031038	38031039	rs74483218	33852427	Wittekind DA	2021-04-01	Eur J Endocrinol	Genome-wide association and transcriptome analysis suggests total serum ghrelin to be linked with GFRAL.	ghrelin levels	1,501 individuals	NA	7p14.1	SFRP4	rs74483218-A	NR	1E-7		0.35	[0.22-0.48] unit decrease	Affymetrix [9868623] (imputed)	N
875	chr7	38058326	38058327	rs10499596	24869959	Jacobs LC	2014-08-01	JAMA Dermatol	Intrinsic and extrinsic risk factors for sagging eyelids.	Upper eyelid sagging severity	6,631 European ancestry individuals	NA	7p14.1	Intergenic	rs10499596-C	0.09	1E-6	(recessive)	0.58	[NR] unit increase	Illumina [at least 2149245] (imputed)	N
875	chr7	38077358	38077359	rs200039274	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	7p14.1		rs200039274-?	NR	9E-35		0.060475	[0.051-0.07] unit increase	Affymetrix [20259828] (imputed)	N
875	chr7	38077531	38077532	rs141845679	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	UBA1777 sp900316255 abundance in stool	5,959 Finnish ancestry individuals	NA	7p14.1		rs141845679-G	0.0113694	2E-8		0.149548	[0.097-0.202] unit decrease	Illumina [7980478] (imputed)	N
875	chr7	38083608	38083609	rs183312687	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	7p14.1	EPDR1	rs183312687-C	0.997364	2E-9		0.0840452	[0.057-0.111] unit decrease	NR [13737936] (imputed)	N
875	chr7	38097861	38097862	rs1357651	29499414	Pei YF	2018-02-27	Bone	Joint study of two genome-wide association meta-analyses identified 20p12.1 and 20q13.33 for bone mineral density.	Lumbar spine bone mineral density	up to 4,692 European ancestry individuals, up to 1,539 Han Chinese ancestry individuals, up to 849 African American individuals, up to 446 Hispanic individuals, 2,882 European ancestry whole-genome sequenced individuals, 3,549 European ancestry whole-exome sequenced individuals, 26,534 European ancestry non-array genotype imputed individuals	NA	7p14.1	EPDR1	rs1357651-T	0.53436	6E-15		0.063	[0.047-0.079] unit decrease	Affymetrix, Illumina [7998108] (imputed)	N
875	chr7	38099909	38099909	rs5883629	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	7p14.1		rs5883629-?	NR	6E-198		0.0631788	[0.059-0.067] unit decrease	Affymetrix [20259828] (imputed)	N
875	chr7	38099911	38099911	rs397932743	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Osteoporosis	8,520 European ancestry cases, 479,981 European ancestry controls, 9,794 East Asian ancestry cases, 168,932 East Asian ancestry controls	NA	7p14.1		rs397932743-CT	NR	2E-8		0.0686	[0.045-0.092] unit decrease	Affymetrix, Illumina [25844994] (imputed)	N
875	chr7	38101404	38101405	rs1717731	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	7p14.1		rs1717731-?	NR	2E-194		0.0777066	[0.072-0.083] unit decrease	Affymetrix [20259828] (imputed)	N
875	chr7	38101404	38101405	rs1717731	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	7p14.1	EPDR1	rs1717731-T	0.819315	4E-24	(men)	0.0631238	[0.05-0.076] unit decrease	NR [17166351] (imputed)	N
875	chr7	38101404	38101405	rs1717731	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	7p14.1	EPDR1	rs1717731-T	0.818173	1E-63		0.069817	[0.061-0.078] unit decrease	NR [17166351] (imputed)	N
875	chr7	38101404	38101405	rs1717731	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	7p14.1	EPDR1	rs1717731-T	0.817175	7E-38	(women)	0.0724659	[0.061-0.084] unit decrease	NR [17166351] (imputed)	N
875	chr7	38110031	38110032	rs6956946	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	7p14.1		rs6956946-?	NR	3E-197		0.0630709	[0.059-0.067] unit decrease	Affymetrix [20259828] (imputed)	N
875	chr7	38110031	38110032	rs6956946	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	7p14.1	STARD3NL	rs6956946-T	0.347246	4E-28	(men)	0.0556625	[0.045-0.066] unit decrease	NR [17166351] (imputed)	N
875	chr7	38110031	38110032	rs6956946	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	7p14.1	STARD3NL	rs6956946-T	0.34621	6E-57		0.0529132	[0.046-0.06] unit decrease	NR [17166351] (imputed)	N
875	chr7	38110031	38110032	rs6956946	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	7p14.1	STARD3NL	rs6956946-T	0.345305	2E-28	(women)	0.0499217	[0.04-0.059] unit decrease	NR [17166351] (imputed)	N
875	chr7	38110072	38110073	rs6974574	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	7p14.1	STARD3NL	rs6974574-A	0.313	1E-18		0.03	[0.024-0.036] unit decrease	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
875	chr7	38110393	38110394	rs939666	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	7p14.1	STARD3NL	rs939666-C	0.801689	1E-66		0.0436743	[0.039-0.049] unit decrease	NR [13737936] (imputed)	N
875	chr7	38112614	38112615	rs1717720	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	7p14.1	intergenic	rs1717720-A	0.346	3E-12		0.0139	[0.01-0.0178] unit decrease	Affymetrix [18391927] (imputed)	N
875	chr7	38112614	38112615	rs1717720	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	7p14.1	STARD3NL	rs1717720-A	0.3474	4E-116		0.0474788	[0.043-0.052] unit decrease	NR [13737936] (imputed)	N
875	chr7	38126588	38126589	rs1524065	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7p14.1		rs1524065-?	NR	7E-35				NR [~ 8900000] (imputed)	N
875	chr7	38128325	38128326	rs6959212	30158200	Trajanoska K	2018-08-29	BMJ	Assessment of the genetic and clinical determinants of fracture risk: genome wide association and mendelian randomisation study.	Fractures	37,857 European or East Asian cases, 227,116 European or East Asian controls	147,200 European ancestry cases, 150,085 European ancestry controls	7p14.1	STARD3NL	rs6959212-T	0.34	9E-10		1.03	[1.02-1.04]	Affymetrix, Illumina [2539801] (imputed)	N
875	chr7	38128325	38128326	rs6959212	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	7p14.1	STARD3NL	rs6959212-T	0.37	3E-6		0.021	[0.0073-0.0347] unit decrease	Affymetrix, Illumina [2704730] (imputed)	N
875	chr7	38128325	38128326	rs6959212	22504420	Estrada K	2012-04-15	Nat Genet	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Lumbar spine bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	7p14.1	STARD3NL	rs6959212-T	0.32	4E-38		0.07	[NR] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
875	chr7	38128325	38128326	rs6959212	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	7p14.1	STARD3NL	rs6959212-T	0.32	2E-9		0.024	[NR] unit decrease	Affymetrix, Illumina [2834208] (imputed)	N
875	chr7	38131437	38131437	rs758252496	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	7p14.1		rs758252496-?	NR	2E-170		0.0860655	[0.08-0.092] unit decrease	Affymetrix [20259828] (imputed)	N
875	chr7	38132368	38132369	rs7793606	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	7p14.1		rs7793606-T	NR	5E-36		0.0171	[0.014-0.02] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
875	chr7	38132368	38132369	rs7793606	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	7p14.1		rs7793606-T	0.701783	2E-13		0.0161912	[0.012-0.021] unit increase	Illumina [13479295] (imputed)	N
875	chr7	38133434	38133434	rs560632070	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	7p14.1		rs560632070-?	NR	4E-127		0.0604753	[0.055-0.066] unit increase	Affymetrix [20259828] (imputed)	N
875	chr7	38136276	38136277	rs1524058	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density (age over 60)	22,504 European ancestry and African American individuals	NA	7p14.1	NR	rs1524058-T	0.4044	7E-10		0.0604	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
875	chr7	38136276	38136277	rs1524058	19801982	Rivadeneira F	2009-10-04	Nat Genet	Twenty bone-mineral-density loci identified by large-scale meta-analysis of genome-wide association studies.	Bone mineral density (spine)	19,195 European ancestry individuals	NA	7p14.1	STARD3NL	rs1524058-T	0.40	1E-9		0.07	[0.05-0.09] s.d. decrease	Affymetrix, Illumina [2543686] (imputed)	N
876	chr7	38142839	38142840	rs34102936	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	7p14.1	NR	rs34102936-A	0.5947	2E-17	(European)	0.0535	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
876	chr7	38142839	38142840	rs34102936	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	7p14.1	NR	rs34102936-A	0.5897	2E-16		0.0471	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
876	chr7	38144897	38144898	rs6963134	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Fractures	53,184 British ancestry cases, 373,611 British ancestry controls	367,900 European ancestry cases, 363,919 European ancestry controls	7p14.1	STARD3NL	rs6963134-A	0.3473	8E-26		0.0327	[0.027-0.039] unit increase	NR [13977204] (imputed)	N
876	chr7	38144897	38144898	rs6963134	27476799	Nielson CM	2016-09-06	J Bone Miner Res	Novel Genetic Variants Associated With Increased Vertebral Volumetric BMD, Reduced Vertebral Fracture Risk, and Increased Expression of SLC1A3 and EPHB2.	Lumbar spine bone mineral density (integral)	11,080 European ancestry individuals	NA	7p14.1	STARD3NL	rs6963134-A	0.34	8E-7		0.064	[0.039-0.089] unit decrease	Affymetrix, Illumina [up to 2659730] (imputed)	N
876	chr7	38146609	38146610	rs118158560	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Growth-regulated protein alpha levels	3,505 Finnish ancestry individuals	NA	7p14.1	NR	rs118158560-G		3E-6		0.2703	[0.15-0.39] SD units decrease	NR [10700000] (imputed)	N
876	chr7	38146624	38146626	rs3055240	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	7p14.1	EPDR1, STARD3NL	rs3055240-?	NR	3E-14		0.023718588	[0.018-0.03] unit increase	Illumina [27896057] (imputed)	N
876	chr7	38147660	38147661	rs11972702	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	7p14.1		rs11972702-T	NR	2E-10		0.0135	[0.0094-0.0176] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
876	chr7	38152862	38152863	rs6973667	33097703	Surakka I	2020-10-23	Nat Commun	MEPE loss-of-function variant associates with decreased bone mineral density and increased fracture risk.	Ultradistal forearm bone mineral density	21,907 European ancestry individuals	NA	7p14.1	NR	rs6973667-G	0.337	6E-9		0.066	[0.044-0.088] SD units increase	Illumina [11603265] (imputed)	N
876	chr7	38152862	38152863	rs6973667	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	7p14.1		rs6973667-?	NR	2E-215				NR [~ 8900000] (imputed)	N
876	chr7	38152922	38152923	rs6978070	33097703	Surakka I	2020-10-23	Nat Commun	MEPE loss-of-function variant associates with decreased bone mineral density and increased fracture risk.	Ultradistal forearm bone mineral density	21,907 European ancestry individuals	NA	7p14.1	NR	rs6978070-?	0.662881642580032	6E-9		0.065998	[0.044-0.088] SD units decrease	Illumina [11603265] (imputed)	N
876	chr7	38152922	38152923	rs6978070	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	7p14.1		rs6978070-?	NR	1E-204		0.0651231	[0.061-0.069] unit decrease	Affymetrix [20259828] (imputed)	N
876	chr7	38153312	38153313	rs62443267	29724592	Pottier C	2018-04-30	Lancet Neurol	Potential genetic modifiers of disease risk and age at onset in patients with frontotemporal lobar degeneration and GRN mutations: a genome-wide association study.	Frontotemporal dementia with GRN mutation	382 European ancestry cases, 1,146 European ancestry controls	67 European ancestry cases, 1,798 European ancestry controls	7p14.1	STARD3NL	rs62443267-C	0.75	6E-6		1.54	[1.28-4.35]	Illumina [7033776] (imputed)	N
876	chr7	38153746	38153747	rs4576334	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Heel bone mineral density variance	197,261 European ancestry individuals	NA	7p14.1	STARD3NL	rs4576334-?	NR	2E-13				NR [5554549] (imputed)	N
876	chr7	38153746	38153747	rs4576334	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Heel bone mineral density	197,261 European ancestry individuals	NA	7p14.1	STARD3NL	rs4576334-?	NR	3E-86				NR [5554549] (imputed)	N
876	chr7	38155562	38155563	rs2893552	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in diabetes mellitus	153 Korean ancestry cases, 5,161 Korean ancestry controls	NA	7p14.1		rs2893552-G	0.289	5E-6		1.726	[1.3659999999999899-2.18]	Affymetrix [7975321] (imputed)	N
876	chr7	38176372	38176373	rs6969314	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Hippocampal volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	7p14.1	NR	rs6969314-?		2E-6				Illumina [4322238] (imputed)	N
876	chr7	38195597	38195598	rs146907294	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	7p14.1	EPDR1, STARD3NL	rs146907294-G	NR	2E-6		0.594741	[0.35-0.84] unit decrease	Illumina [at least 950000] (imputed)	N
876	chr7	38221753	38221754	rs17171305	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	7p14.1	STARD3NL	rs17171305-T	NR	9E-6		0.149811	[0.084-0.216] unit increase	Illumina [13520550] (imputed)	N
876	chr7	38240907	38240908	rs4723738	22310353	Man M	2012-02-07	Pharmacogenomics J	Beyond single-marker analyses: mining whole genome scans for insights into treatment responses in severe sepsis.	Treatment response for severe sepsis	1,446 individuals	NA	7p14.1	STARD3NL	rs4723738-?	NR	6E-6	(AG vs. not AG)			Illumina [856627]	N
876	chr7	38242165	38242166	rs10224886	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein THPO	5,344 Icelandic ancestry individuals	NA	7p14.1		rs10224886-A	0.254	5E-12		0.137504	[0.099-0.177] unit decrease	Illumina [7506463] (imputed)	N
876	chr7	38265179	38265211	rs138994411	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	7p14.1		rs138994411-C	NR	9E-13		0.0149	[0.011-0.019] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
876	chr7	38265179	38265179	rs765064269	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	7p14.1	NR	rs765064269-D	0.466277	7E-11		0.013466	[0.0094-0.0175] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
876	chr7	38270497	38270498	rs10260257	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	7p14.1		rs10260257-G	0.762634	3E-8		0.026084	[0.017-0.035] unit increase	NR [11722792] (imputed)	N
876	chr7	38270549	38270550	rs10260281	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	7p14.1	NR	rs10260281-C	0.237061	4E-10		0.014114	[0.0097-0.0185] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
876	chr7	38271160	38271161	rs9801416	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7p14.1		rs9801416-?	NR	2E-9				NR [~ 8900000] (imputed)	N
877	chr7	38277791	38277792	rs2534596	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	7p14.1	STARD3NL	rs2534596-A	0.619844	9E-9		0.0113602	[0.0075-0.0152] unit decrease	Affymetrix [NR] (imputed)	N
877	chr7	38277791	38277792	rs2534596	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7p14.1	NR	rs2534596-A	NR	2E-8		0.02	unit decrease	Affymetrix [at least 7091467] (imputed)	N
877	chr7	38277791	38277792	rs2534596	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7p14.1	NR	rs2534596-A	0.624	4E-7	(EA)	0.02	unit decrease	Affymetrix [at least 7091467] (imputed)	N
877	chr7	38278788	38278789	rs2159502	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	7p14.1		rs2159502-T	0.620117	3E-8		0.0210298	[0.014-0.028] unit decrease	NR [11722792] (imputed)	N
877	chr7	38278788	38278789	rs2159502	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	7p14.1		rs2159502-T	0.620117	5E-8		0.0206184	[0.013-0.028] unit decrease	NR [11722792] (imputed)	N
877	chr7	38306522	38306523	rs147606948	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	7p14.1	TARP	rs147606948-G	NR	3E-6		0.588709	[0.34-0.84] unit decrease	Illumina [at least 950000] (imputed)	N
877	chr7	38344849	38344850	rs77517838	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	7p14.1		rs77517838-?	NR	1E-10				NR [~ 8900000] (imputed)	N
877	chr7	38386557	38386558	rs62445005	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	7p14.1	NR	rs62445005-?	NR	7E-6		0.0723	[0.041-0.104] unit increase	Illumina [at least 560000] (imputed)	N
878	chr7	38460872	38460873	rs139352846	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter non-alcoholic beverage consumption	85,852 European ancestry individuals	39,924 European ancestry individuals	7p14.1	AMPH	rs139352846-C	0.9842	4E-6		0.0305	[0.017-0.044] unit increase	Affymetrix [~ 7740000] (imputed)	N
878	chr7	38462178	38462179	rs13228275	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	7p14.1	NR	rs13228275-T	NR	4E-7	(GEE model)	0.93231	[0.57-1.29] unit decrease	NR [NR] (imputed)	N
878	chr7	38475831	38475832	rs7811443	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Small vessel stroke	333 Indian ancestry cases, 2,154 Indian ancestry controls	NA	7p14.1		rs7811443-?	NR	3E-6		1.2252756	[1.12526616705869-1.3341736695195]	Illumina [7827597] (imputed)	N
878	chr7	38479433	38479434	rs3778883	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Unilateral cleft lip	184 Asian ancestry cases, 151 European ancestry cases, 167 Hispanic cases, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	7p14.1	NR	rs3778883-?	NR	5E-6		0.55	[0.51-0.6]	Illumina [539000] (imputed)	N
878	chr7	38524061	38524062	rs11561859	29738550	de Oliveira Otto MC	2018-05-08	PLoS One	Genome-wide association meta-analysis of circulating odd-numbered chain saturated fatty acids: Results from the CHARGE Consortium.	Circulating odd-numbered chain saturated fatty acid levels (C17:0)	6,016 European ancestry individuals	NA	7p14.1	NR	rs11561859-?	NR	2E-6		0.0016	[-0.00232-0.00552] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
879	chr7	38605601	38605602	rs73692776	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7p14.1	NR	rs73692776-T	0.01394	2E-8	(EMILIN2)	0.1543	NR unit increase	Illumina [1671387] (imputed)	N
879	chr7	38627390	38627391	rs186289784	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	7p14.1	AMPH	rs186289784-A	1.0	5E-6	(AA)	2.507	NR unit increase	Illumina [NR] (imputed)	N
879	chr7	38636890	38636891	rs10263645	31209788	Li HQ	2019-06-18	Neurotox Res	Genome-Wide Association Study of Cerebral Microbleeds on MRI.	Cerebral microbleeds	176 European ancestry cases, 278 European ancestry controls	NA	7p14.1	AMPH	rs10263645-?	0.21	6E-6		2.4390244		Illumina [983392]	N
880	chr7	38676678	38676679	rs10280201	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	7p14.1	NR	rs10280201-?	NR	4E-11				Affymetrix [NR]	N
880	chr7	38696574	38696575	rs10275815	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Cancer	56,634 White British ancestry cases, 218,196 White British ancestry controls	NA	7p14.1		rs10275815-?	NR	8E-6		1.04445	[1.03-1.06]	NR [688737]	N
880	chr7	38706816	38706817	rs10280089	30946743	Li Z	2019-04-04	PLoS Genet	Genome-wide association study in Turkish and Iranian populations identify rare familial Mediterranean fever gene (MEFV) polymorphisms associated with ankylosing spondylitis.	Ankylosing spondylitis	921 Turkish ancestry cases, 907 Turkish ancestry controls, 422 Iranian ancestry cases, 754 Iranian ancestry controls	NA	7p14.1	AMPH	rs10280089-A	NR	1E-6		1.44	[1.24-1.67]	Illumina [up to 294091]	N
880	chr7	38724867	38724868	rs59082935	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Major depressive disorder (MTAG)	at least 170,756 European ancestry cases, at least 329,443 European ancestry controls	NA	7p14.1	NR	rs59082935-T	0.1342	4E-8		0.03502372	[0.023-0.048] unit increase	NR [NR]	N
880	chr7	38744811	38744812	rs4316071	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	7p14.1	NR	rs4316071-?	NR	3E-6		4.668	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
880	chr7	38752093	38752094	rs7794030	29698419	Pande M	2018-04-26	PLoS One	Genetic susceptibility markers for a breast-colorectal cancer phenotype: Exploratory results from genome-wide association studies.	Breast cancer and/or colorectal cancer	589 European ancestry colorectal cancer with a family history of breast cancer cases, 378 European ancestry breast cancer cases with a family history of colorectal cancer cases, 18 European ancestry breast and colorectal cancer cases, 1,769 European ancestry controls	NA	7p14.1	VPS41	rs7794030-A	0.81	1E-6		1.43	[1.29-1.65]	Illumina [6220060] (imputed)	N
880	chr7	38767913	38767914	rs1468348	29698419	Pande M	2018-04-26	PLoS One	Genetic susceptibility markers for a breast-colorectal cancer phenotype: Exploratory results from genome-wide association studies.	Breast cancer and/or colorectal cancer	589 European ancestry colorectal cancer with a family history of breast cancer cases, 378 European ancestry breast cancer cases with a family history of colorectal cancer cases, 18 European ancestry breast and colorectal cancer cases, 1,769 European ancestry controls	NA	7p14.1	VPS41	rs1468348-T	0.8	5E-6		1.39	[1.25-1.6]	Illumina [6220060] (imputed)	N
881	chr7	38835034	38835035	rs11984145	19734545	Need AC	2009-09-04	Hum Mol Genet	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA	7p14.1	VPS41	rs11984145-?	0.0471	6E-6	(PAL8)			Illumina [475971]	N
881	chr7	38907694	38907695	rs6943746	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	7p14.1	NR	rs6943746-G	0.385692114515735	1E-11		0.00637754	[0.0045-0.0082] unit decrease	NR [NR]	N
881	chr7	38907694	38907695	rs6943746	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	7p14.1	NR	rs6943746-G	0.385692114515735	2E-11		0.007762024	[0.0055-0.01] unit decrease	NR [NR]	N
881	chr7	38907694	38907695	rs6943746	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	7p14.1	NR	rs6943746-G	0.385692114515735	2E-11		0.010107877	[0.0072-0.013] unit decrease	NR [NR]	N
881	chr7	38907694	38907695	rs6943746	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	7p14.1	NR	rs6943746-G	0.385692114515735	9E-11		0.008237014	[0.0057-0.0107] unit decrease	NR [NR]	N
881	chr7	38907694	38907695	rs6943746	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	7p14.1	NR	rs6943746-G	0.385692114515735	2E-11		0.0064602597	[0.0046-0.0083] unit decrease	NR [NR]	N
881	chr7	38913016	38913017	rs35995292	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Subjective well-being (MTAG)	388,538 European ancestry individuals	NA	7p14.1	NR	rs35995292-G	0.3191	3E-8		0.011	[0.0071-0.0149] unit decrease	Illumina [NR] (imputed)	N
882	chr7	38939253	38939254	rs10274968	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms (MTAG)	955,012 individuals	NA	7p14.1	NR	rs10274968-?		3E-8				NR [520857]	N
882	chr7	38939253	38939254	rs10274968	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms	688,809 individuals	NA	7p14.1	NR	rs10274968-?		1E-8				NR [11140414]	N
882	chr7	38939253	38939254	rs10274968	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	7p14.1	NR	rs10274968-T	NR	9E-9		5.758	z score increase	Affymetrix [10847151] (imputed)	N
882	chr7	38939253	38939254	rs10274968	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depression	688,809 European ancestry individuals	NA	7p14.1	NR	rs10274968-T	NR	1E-8		5.711	z score increase	Affymetrix [10847151] (imputed)	N
882	chr7	38963190	38963191	rs6970541	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	7p14.1	FAM183BP	rs6970541-T	0.49136	5E-9		5.83	z score increase	NR [10847151] (imputed)	N
882	chr7	38984276	38984277	rs2915700	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin I concentration	12,730 European ancestry individuals, 1,606 African American individuals	NA	7p14.1		rs2915700-?	NR	8E-7		0.09	[0.053-0.127] unit increase	Affymetrix, Illumina [6937320] (imputed)	N
882	chr7	39037915	39037916	rs952623	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	7p14.1	POU6F2-AS2	rs952623-C	NR	1E-8		0.018207885	[0.012-0.024] unit decrease	Affymetrix [NR]	N
882	chr7	39043105	39043106	rs2696187	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	7p14.1	POU6F2	rs2696187-?		1E-11				Affymetrix, Illumina [NR] (imputed)	N
882	chr7	39054836	39054837	rs10435033	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Intraocular pressure	133,492 European ancestry individuals	NA	7p14.1	POU6F2	rs10435033-G	0.66	5E-8				Affymetrix, Illumina [8002429] (imputed)	N
882	chr7	39054836	39054837	rs10435033	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Glaucoma (multi-trait analysis)	133,492 European ancestry individuals with intraocular pressure measurements, 90,939 European ancestry individuals with vertical cup-disc ratio measurements, 7,947 British ancestry glaucoma cases, 119,318 British ancestry controls	6,924 European ancestry glaucoma cases, 40,230 European ancestry controls	7p14.1	POU6F2	rs10435033-G	0.66	9E-9		1.07	NR	Affymetrix, Illumina [8002429] (imputed)	N
882	chr7	39056648	39056649	rs62443626	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	7p14.1	NR	rs62443626-?	NR	4E-7		5.072	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
883	chr7	39060311	39060312	rs17171519	33692100	Simcoe M	2021-03-10	Sci Adv	Genome-wide association study in almost 195,000 individuals identifies 50 previously unidentified genetic loci for eye color.	Eye color	157,485 European ancestry individuals	35,501 European ancestry individuals, 959 Han Chinese ancestry individuals, 677 Indian ancestry individuals	7p14.1		rs17171519-T	0.664	2E-8	(EA)	5.62	NR z score decrease	Illumina [11532091] (imputed)	N
883	chr7	39071309	39071310	rs12674371	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Intraocular pressure	133,492 European ancestry individuals	NA	7p14.1	POU6F2	rs12674371-?	NR	3E-8		0.0746	[0.048-0.101] unit decrease	Affymetrix, Illumina [up to 40000000] (imputed)	N
883	chr7	39076326	39076327	rs6952464	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	7p14.1	POU6F2	rs6952464-C	0.659	1E-10		0.086	[0.061-0.111] unit increase	Affymetrix, Illumina [NR] (imputed)	N
883	chr7	39077396	39077397	rs10248136	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	23,963 European ancestry cases, 306,942 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	43,254 European ancestry cases, 1,471,118 European ancestry controls	7p14.1	POU6F2	rs10248136-T	NR	6E-11		0.0466	unit increase	Illumina [15409056] (imputed)	N
883	chr7	39079472	39079473	rs2140910	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	7p14.1	NR	rs2140910-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
883	chr7	39079472	39079473	rs2140910	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	7p14.1		rs2140910-?	NR	1E-8				NR [~ 8900000] (imputed)	N
883	chr7	39090697	39090698	rs12531458	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	7p14.1		rs12531458-A	0.5205	4E-17	(conditional-joint)	0.012	[0.0093-0.0147] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
883	chr7	39090697	39090698	rs12531458	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	7p14.1	NR	rs12531458-A	0.5155	4E-8		0.012224774	NR unit increase	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
883	chr7	39091042	39091043	rs10951590	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	7p14.1		rs10951590-T	0.3275	4E-13		0.0109	[0.008-0.0138] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
883	chr7	39091042	39091043	rs10951590	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	7p14.1	Intergenic	rs10951590-T	0.3275	9E-15	(MTAG)	0.0108	[0.0081-0.0135] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
883	chr7	39091042	39091043	rs10951590	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	7p14.1	Intergenic	rs10951590-T	0.3278	3E-9	(MTAG)	0.0145	[0.0098-0.0192] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
883	chr7	39093927	39093928	rs7786896	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	7p14.1	NR	rs7786896-T	NR	8E-6		1.05	[NR]	Illumina [7158791] (imputed)	N
883	chr7	39121499	39121500	rs10464366	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	7p14.1	NR	rs10464366-T	0.23005360311804	3E-6	(IGP24)	0.1748	[0.1-0.25] unit decrease	Illumina [~ 2500000] (imputed)	N
883	chr7	39129395	39129396	rs62442206	31972866	Nagel M	2020-01-23	Acta Psychiatr Scand	Genome-wide association study of the sensitivity to environmental stress and adversity (SESA) neuroticism cluster.	Sensitivity to environmental stress and adversity	351,827 European ancestry individuals	NA	7p14.1	NR	rs62442206-C	NR	9E-10		0.02117	NR unit decrease	NR [7259579]	N
883	chr7	39129940	39129941	rs11767715	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling hurt	372,047 European ancestry individuals	NA	7p14.1	POU6F2	rs11767715-T	0.132418	6E-9		5.81	z score decrease	NR [10847151] (imputed)	N
883	chr7	39168280	39168281	rs112503449	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	7p14.1	Intergenic	rs112503449-A	0.0705	3E-8	(MTAG)	0.0194	[0.013-0.026] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
883	chr7	39168280	39168281	rs112503449	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	7p14.1	Intergenic	rs112503449-A	0.0703	1E-12	(MTAG)	0.0228	[0.017-0.029] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
884	chr7	39217812	39217813	rs10246388	30705256	Koshimizu H	2019-01-31	Transl Psychiatry	Genome-wide association study identifies a novel locus associated with psychological distress in the Japanese population.	Psychological distress	3,981 Japanese ancestry cases, 6,349 Japaneses ancestry controls	NA	7p14.1	NR	rs10246388-A	0.9777	8E-6		1.9766752	[1.68-2.28]	Illumina [8567708] (imputed)	N
884	chr7	39246986	39246987	rs113205706	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	7p14.1		rs113205706-A	0.0944	2E-8		0.0135	[0.0088-0.0182] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
884	chr7	39270464	39270465	rs28599716	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	7p14.1	NR	rs28599716-?	NR	1E-7		5.259	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
884	chr7	39280728	39280729	rs62453434	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure	35,269 European ancestry cases, 63,451 European ancestry controls	NA	7p14.1	NR	rs62453434-G	0.877904	2E-6		1.0683761	[1.04-1.1]	Affymetrix [7791636] (imputed)	N
884	chr7	39295736	39295736	rs141180025	33287642	Said MA	2020-12-08	J Am Heart Assoc	Associations of Observational and Genetically Determined Caffeine Intake With Coronary Artery Disease and Diabetes Mellitus.	Caffeine consumption from tea	395,866 European ancestry individuals	NA	7p14.1	POU6F2	rs141180025-CT	0.391273	2E-9		0.01399	[0.0094-0.0186] unit decrease	Affymetrix [19400838] (imputed)	N
884	chr7	39296488	39296489	rs6462899	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Tea consumption	336,898 European ancestry individuals	39,924 European ancestry individuals	7p14.1	POU6F2	rs6462899-A	0.6238	2E-8		0.0087	[0.0056-0.0118] unit increase	Affymetrix [~ 7740000] (imputed)	N
884	chr7	39301229	39301230	rs62453447	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	7p14.1	NR	rs62453447-G	NR	3E-9		0.0149	[0.01-0.0198] unit decrease	Affymetrix [9000000] (imputed)	N
884	chr7	39310866	39310867	rs12701709	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	7p14.1	NR	rs12701709-A	0.771	2E-8		0.00879478	[0.0057-0.0119] unit decrease	NR [~ 9732723] (imputed)	N
885	chr7	39324252	39324253	rs13246220	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	7p14.1		rs13246220-T	0.6117	9E-11		0.0093	[0.0066-0.012] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
885	chr7	39324504	39324505	rs13233706	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	7p14.1	Intergenic	rs13233706-T	0.4523	7E-11	(MTAG)	0.0086	[0.0061-0.0111] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
885	chr7	39326477	39326478	rs4549685	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	7p14.1		rs4549685-C	0.67	4E-8				NR [NR] (imputed)	N
885	chr7	39326477	39326478	rs4549685	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	7p14.1		rs4549685-C	0.67	3E-13		0.011	% increase	NR [NR] (imputed)	N
885	chr7	39326477	39326478	rs4549685	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	7p14.1	POU6F2	rs4549685-T	0.3305	5E-14		0.002	[0.0014-0.0026] unit increase	Affymetrix [15275733] (imputed)	N
885	chr7	39326477	39326478	rs4549685	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	223,215 British ancestry individuals	111,610 British ancestry individuals	7p14.1	POU6F2	rs4549685-T	0.33	2E-12		0.002	[0.0014-0.0026] unit increase	Affymetrix [15275733] (imputed)	N
885	chr7	39333569	39333570	rs4072719	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	7p14.1		rs4072719-?	NR	1E-10				NR [~ 8900000] (imputed)	N
885	chr7	39376021	39376022	rs10268735	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	7p14.1	Intergenic	rs10268735-A	0.6675	5E-9	(MTAG)	0.0102	[0.0069-0.0135] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
885	chr7	39376021	39376022	rs10268735	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	7p14.1		rs10268735-A	0.663	3E-10	(conditional-joint)	0.0095	[0.0066-0.0124] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
885	chr7	39387601	39387602	rs117446815	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	7p14.1	NR	rs117446815-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
885	chr7	39418537	39418538	rs60464047	25628336	Hromatka BS	2015-01-26	Hum Mol Genet	Genetic variants associated with motion sickness point to roles for inner ear development, neurological processes and glucose homeostasis.	Motion sickness	80,494 European ancestry individuals	NA	7p14.1	POU6F2	rs60464047-T	0.85	7E-9		0.043	[0.028-0.057] unit decrease	Illumina [7428049] (imputed)	N
885	chr7	39421642	39421642	rs3839694	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	7p14.1		rs3839694-AAATAAT	NR	1E-10		0.0208	[0.015-0.027] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
885	chr7	39427768	39427769	rs887013	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	7p14.1	POU6F2	rs887013-A	0.6818	1E-8		0.002	[0.0014-0.0026] unit increase	Affymetrix [15275733] (imputed)	N
885	chr7	39432329	39432330	rs58695218	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	7p14.1	YAE1D1	rs58695218-A	0.8097	4E-8		0.015145234	[0.0097-0.0206] unit increase	Affymetrix [11514654] (imputed)	N
885	chr7	39445384	39445385	rs3778934	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	7p14.1		rs3778934-?	NR	1E-10				NR [~ 8900000] (imputed)	N
885	chr7	39448935	39448936	rs2237403	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	7p14.1	NR	rs2237403-?	NR	5E-11				Affymetrix [~ 8270000] (imputed)	N
885	chr7	39448935	39448936	rs2237403	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	7p14.1	NA	rs2237403-T	0.3582	1E-12		0.0128	[0.0093-0.0163] unit decrease	NR [~ 27400000] (imputed)	N
885	chr7	39449767	39449768	rs2237402	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		7p14.1	POU6F2	rs2237402-G	0.660972	2E-10		0.00922809	[0.0064-0.0121] unit increase	Affymetrix [12370749]	N
886	chr7	39510622	39510623	rs1558162	30621171	Coltell O	2019-01-04	Nutrients	Genome-Wide Association Study (GWAS) on Bilirubin Concentrations in Subjects with Metabolic Syndrome: Sex-Specific GWAS Analysis and Gene-Diet Interactions in a Mediterranean Population.	Serum bilirubin levels x sex interaction in metabolic syndrome	188 European ancestry male individuals, 242 European ancestry female individuals	NA	7p14.1	LOC105375238	rs1558162-?	NR	1E-6				Illumina [622468]	N
886	chr7	39513997	39513998	rs3937443	30621171	Coltell O	2019-01-04	Nutrients	Genome-Wide Association Study (GWAS) on Bilirubin Concentrations in Subjects with Metabolic Syndrome: Sex-Specific GWAS Analysis and Gene-Diet Interactions in a Mediterranean Population.	Serum bilirubin levels x sex interaction in metabolic syndrome	188 European ancestry male individuals, 242 European ancestry female individuals	NA	7p14.1	LOC105375238	rs3937443-?	NR	1E-6				Illumina [622468]	N
886	chr7	39523970	39523971	rs60267257	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	7p14.1	NR	rs60267257-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
886	chr7	39570840	39570841	rs74477937	32005204	Alblooshi H	2020-01-31	BMC Psychiatry	Stratified analyses of genome wide association study data reveal haplotypes for a candidate gene on chromosome 2 (KIAA1211L) is associated with opioid use in patients of Arabian descent.	Opioid use disorder	199 Arabian ancestry cases, 253 Arabian ancestry controls	NA	7p14.1	YAE1D1	rs74477937-?	NR	1E-8				Illumina [1879623]	N
887	chr7	39584383	39584384	rs56333853	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	7p14.1	NR	rs56333853-?	NR	5E-8				Illumina [7760689] (imputed)	N
887	chr7	39585410	39585411	rs118129027	32005204	Alblooshi H	2020-01-31	BMC Psychiatry	Stratified analyses of genome wide association study data reveal haplotypes for a candidate gene on chromosome 2 (KIAA1211L) is associated with opioid use in patients of Arabian descent.	Opioid use disorder	199 Arabian ancestry cases, 253 Arabian ancestry controls	NA	7p14.1	YAE1D1	rs118129027-?	NR	1E-8				Illumina [1879623]	N
887	chr7	39585410	39585411	rs118129027	30556296	Alblooshi H	2018-12-16	Am J Med Genet B Neuropsychiatr Genet	A case-control genome wide association study of substance use disorder (SUD) identifies novel variants on chromosome 7p14.1 in patients from the United Arab Emirates (UAE).	Substance use disorder	249 Arabian ancestry cases, 253 Arabian ancestry controls	415 European ancestry cases, 105 European ancestry controls	7p14.1	NR	rs118129027-C	0.04	8E-8	(Arabian)	3.7	[2.21-6.36]	Illumina [1879623]	N
887	chr7	39600096	39600097	rs12538843	32595297	Kweon K	2018-04-01	Soa Chongsonyon Chongsin Uihak	Genome-Wide Analysis Reveals Four Novel Loci for Attention-Deficit Hyperactivity Disorder in Korean Youths.	Attention deficit hyperactivity disorder (inattention symptoms)	27 Korean ancestry child sibling pairs	NA	7p14.1	POU6F2, YAE1D1	rs12538843-A	0.287	2E-8				Affymetrix [432921]	N
887	chr7	39607398	39607399	rs6462932	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	7p14.1		rs6462932-?	NR	7E-11				NR [~ 8900000] (imputed)	N
887	chr7	39662261	39662262	rs79987883	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	7p14.1	NR	rs79987883-?	NR	6E-6		4.544	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
889	chr7	39908258	39908259	rs62453020	34387878	Kim KY	2021-08-13	Hepatology	Genome-wide association of individual vulnerability with alcoholic liver disease: A Korean Genome and Epidemiology Study.	Alcohol-associated liver disease in non drinkers	782 Korean ancestry cases, 18,058 Korean ancestry controls	NA	7p14.1		rs62453020-?	NR	1E-6		1.567	[1.305-1.88]	Affymetrix [7975321] (imputed)	N
889	chr7	39968525	39968527	rs373711932	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 1, breadth of lateral portion of upper face)	2,187 European ancestry individuals	NA	7p14.1	NR	rs373711932-C	0.4192	3E-6		0.1413	[0.082-0.2] unit decrease	Illumina [10677593] (imputed)	N
889	chr7	39972124	39972125	rs10243593	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	7p14.1	intergenic	rs10243593-A	0.471	1E-10		0.02327011	[0.016-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
890	chr7	39984610	39984611	rs74415766	25676789	Wen CC	2015-05-01	Clin Pharmacol Ther	Genome-wide association study identifies ABCG2 (BCRP) as an allopurinol transporter and a determinant of drug response.	Serum uric acid levels in response to allopurinol in gout	1,607 European ancestry individuals, 238 East Asian individuals, 84 African American individuals, 85 Hispanic individuals, 13 individuals	NA	7p14.1	CDK13	rs74415766-?		3E-6		1.1992	[NR] unit decrease	Affymetrix [NR] (imputed)	N
890	chr7	39998736	39998737	rs34148588	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	7p14.1	CDK13	rs34148588-A	0.572081	3E-9		0.013243978	[0.0089-0.0176] unit decrease	Affymetrix [93095623] (imputed)	N
890	chr7	40020992	40020993	rs11346207	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	7p14.1	CDK13	rs11346207-T	0.067918	3E-10		0.028186018	[0.019-0.037] unit increase	Affymetrix [93095623] (imputed)	N
890	chr7	40031267	40031268	rs13310449	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	7p14.1	NR	rs13310449-G	0.35573	9E-23		0.019418	[0.016-0.023] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
890	chr7	40034082	40034083	rs12531774	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p14.1	NR	rs12531774-T	0.116574	1E-10				Affymetrix, Illumina [24588908] (imputed)	N
890	chr7	40057535	40057536	rs773410	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p14.1	NR	rs773410-A	0.578788	2E-22				Affymetrix, Illumina [23472807] (imputed)	N
890	chr7	40060706	40060707	rs532636967	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	7p14.1		rs532636967-C	NR	1E-15		0.0196	[0.015-0.024] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
890	chr7	40060706	40060707	rs532636967	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	7p14.1	CDK13	rs532636967-C	0.461123	1E-9		0.013796752	[0.0093-0.0182] unit decrease	Affymetrix [93095623] (imputed)	N
890	chr7	40060706	40060707	rs532636967	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	7p14.1	CDK13	rs532636967-C	0.461076	2E-18		0.019833164	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
890	chr7	40094640	40094641	rs9639820	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	IgD on IgD+ CD38dim B cell	3,656 Sardinian (founder/genetic isolate) ancestry individuals	NA	7p14.1		rs9639820-G	0.39176	9E-10		0.1551	[0.11-0.2] unit increase	Illumina [18238174] (imputed)	N
890	chr7	40094640	40094641	rs9639820	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	IgD on IgD+ CD24- B cell	3,656 Sardinian (founder/genetic isolate) ancestry individuals	NA	7p14.1		rs9639820-G	0.39176	7E-10		0.1554	[0.11-0.2] unit increase	Illumina [18238174] (imputed)	N
891	chr7	40155623	40155624	rs7786147	28763065	Xia K	2017-08-01	Transl Psychiatry	Genome-wide association analysis identifies common variants influencing infant brain volumes.	Brain volume in infants (grey matter)	295 European, African American, Asian, Native American and other admixed ancestry infants, 17 European, African American, Asian, Native American and other admixed ancestry sibling pairs, 116 European, African American, Asian, Native American and other admixed ancestry twin pairs.	NA	7p14.1	MPLKIP	rs7786147-C	NR	1E-7		1.69	percent decrease	Affymetrix [8762422] (imputed)	N
891	chr7	40159423	40159424	rs6945703	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Strep throat	52,487 European ancestry cases, 22,017 European ancestry controls	NA	7p14.1	NR	rs6945703-?	NR	4E-6		0.0371	[0.021-0.053] unit decrease	Illumina [at least 560000] (imputed)	N
891	chr7	40167783	40167784	rs77009694	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	7p14.1	NR	rs77009694-?	NR	1E-9				Illumina [7760689] (imputed)	N
891	chr7	40190448	40190449	rs388354	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on naive-mature B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	7p14.1		rs388354-C	0.52054	4E-8		0.1343	[0.086-0.182] unit decrease	Illumina [18238311] (imputed)	N
892	chr7	40319239	40319242	rs72328411	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Monobrow	69,284 European ancestry individuals	NA	7p14.1	C7orf10	rs72328411-?	NR	3E-10		0.075	[0.099-0.052] unit decrease	Illumina [12039491] (imputed)	N
892	chr7	40333941	40333942	rs17171670	31219150	Ekenberg C	2019-06-13	J Infect Dis	Single nucleotide polymorphisms in HLA alleles are associated with HIV-1 viral load in demographically diverse, ART-naive participants from the START trial.	Pre-treatment viral load in HIV-1 infection	1,398 European ancestry individuals, 572 Black individuals, 418 Hispanic individuals, 13 Asian ancestry individuals, 39 individuals	NA	7p14.1	SUGCT	rs17171670-G	0.072	3E-17		0.38	[0.29-0.47] unit decrease	Affymetrix [339439]	N
892	chr7	40361833	40361834	rs3857747	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	7p14.1	NR	rs3857747-?	NR	1E-6	(EA)	0.2401	[0.15-0.33] unit increase	Illumina [up to 11892802] (imputed)	N
893	chr7	40396299	40396300	rs6462976	33888516	Zheng T	2021-04-22	Gut	Genome-wide analysis of 944 133 individuals provides insights into the etiology of haemorrhoidal disease.	Haemorrhoidal disease	218,920 European ancestry cases, 725,213 European ancestry controls	NA	7p14.1	SUGCT	rs6462976-?	0.4597	1E-12		0.97	[0.96-0.98]	Affymetrix, Illumina [8494288] (imputed)	N
893	chr7	40406875	40406876	rs186166891	27322543	Gormley P	2016-06-20	Nat Genet	Meta-analysis of 375,000 individuals identifies 38 susceptibility loci for migraine.	Migraine	59,674 European ancestry cases, 316,078 European ancestry controls	NA	7p14.1	C7orf10	rs186166891-T	0.11	1E-15		1.09	[1.07-1.12]	Affymetrix, Illumina, Perlegen [8094889] (imputed)	N
893	chr7	40416316	40416317	rs17171703	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	7p14.1		rs17171703-T	NR	5E-12		0.0175	[0.013-0.022] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
893	chr7	40416316	40416317	rs17171703	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	7p14.1		rs17171703-?	NR	2E-12				NR [~ 8900000] (imputed)	N
893	chr7	40417731	40417732	rs61693171	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Migraine	53,109 European ancestry cases, 230,876 European ancestry controls	NA	7p14.1	C7orf10	rs61693171-?	NR	9E-9		1.073	[1.047-1.098]	Illumina [13763073] (imputed)	N
893	chr7	40427633	40427634	rs12532479	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (antimigraine preparations)	5,521 European ancestry cases, 114,323 European ancestry controls	NA	7p14.1	C7orf10	rs12532479-C	0.105246	2E-8		0.17753339	[0.12-0.24] unit increase	Affymetrix [7288503] (imputed)	N
893	chr7	40430791	40430792	rs77024938	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Pulse pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 Japanese ancestry individuals	7p14.1	NR	rs77024938-C	0.3544	4E-9	(East Asian)	0.2726	[0.18-0.36] unit decrease	Illumina [6200000] (imputed)	N
893	chr7	40440232	40440233	rs17171710	32632093	Guo Y	2020-07-06	Nat Commun	A genome-wide cross-phenotype meta-analysis of the association of blood pressure with migraine.	Migraine and/or systolic blood pressure	757,601 European ancestry individuals with blood pressure measurements, 59,674 European ancestry migraine cases, 316,078 European ancestry controls	NA	7p14.1	NR	rs17171710-?	NR	1E-26				NR [up to 7000000]	N
893	chr7	40440232	40440233	rs17171710	32632093	Guo Y	2020-07-06	Nat Commun	A genome-wide cross-phenotype meta-analysis of the association of blood pressure with migraine.	Migraine and/or pulse pressure	757,601 European ancestry individuals with blood pressure measurements, 59,674 European ancestry migraine cases, 316,078 European ancestry controls	NA	7p14.1	NR	rs17171710-?	NR	3E-41				NR [up to 7000000]	N
893	chr7	40447970	40447971	rs76206723	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	7p14.1	C7orf10	rs76206723-A	0.107	3E-13		0.4119	[0.3-0.52] mmHg decrease	Affymetrix [NR] (imputed)	N
893	chr7	40447970	40447971	rs76206723	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	7p14.1	C7orf10	rs76206723-A	0.1069	1E-24		0.4336	[0.35-0.52] mmHg decrease	Affymetrix [NR] (imputed)	N
893	chr7	40447970	40447971	rs76206723	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Pulse pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 Japanese ancestry individuals	7p14.1	SUGCT	rs76206723-A	0.3566	1E-8	(Japanese)	0.306	[0.2-0.41] unit decrease	Illumina [6200000] (imputed)	N
893	chr7	40447970	40447971	rs76206723	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Pulse pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	7p14.1	SUGCT	rs76206723-A	0.1	7E-12		0.346	[0.25-0.44] unit decrease	Affymetrix [~ 9800000] (imputed)	N
893	chr7	40457356	40457357	rs117058392	31194736	Tiensuu H	2019-06-13	PLoS Genet	Risk of spontaneous preterm birth and fetal growth associates with fetal SLIT2.	Gestational age at birth (child effect)	666 Finnish ancestry infants	NA	7p14.1	SUGCT	rs117058392-A	NR	3E-6		2.19	unit decrease	Illumina [6778521] (imputed)	N
893	chr7	40460128	40460129	rs12538229	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Pulse pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 Japanese ancestry individuals	7p14.1	SUGCT	rs12538229-T	0.3504	6E-9	(Japanese)	0.3182	[0.21-0.43] unit decrease	Illumina [6200000] (imputed)	N
893	chr7	40460128	40460129	rs12538229	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Pulse pressure	136,249 Japanese ancestry individuals	NA	7p14.1	SUGCT	rs12538229-?	NR	1E-8		0.02289	[0.015-0.031] unit decrease	Illumina [6108953] (imputed)	N
893	chr7	40460128	40460129	rs12538229	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	7p14.1	C7orf10	rs12538229-C		2E-6		0.298	unit increase	Affymetrix [at least 2696785] (imputed)	N
893	chr7	40460128	40460129	rs12538229	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	7p14.1	C7orf10	rs12538229-C		5E-6		0.26	unit increase	Affymetrix [at least 2696785] (imputed)	N
893	chr7	40460128	40460129	rs12538229	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	7p14.1	C7orf10	rs12538229-C		2E-12		0.289	unit increase	Affymetrix [at least 2696785] (imputed)	N
893	chr7	40466199	40466200	rs4379368	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine without aura	7,107 European ancestry cases, 69,427 European ancestry controls	NA	7p14.1	c7orf10	rs4379368-T	0.11	6E-8		1.19	[1.12-1.27]	Affymetrix, Illumina [~ 2300000] (imputed)	N
893	chr7	40466199	40466200	rs4379368	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine - clinic-based	5,175 European ancestry clinic-based cases, 13,972 European ancestry clinic-based controls	NA	7p14.1	c7orf10	rs4379368-T	0.11	7E-7		1.2	[1.12-1.29]	Affymetrix, Illumina [~ 2300000] (imputed)	N
893	chr7	40466199	40466200	rs4379368	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NA	7p14.1	c7orf10	rs4379368-T	0.11	1E-9		1.11	[1.08-1.15]	Affymetrix, Illumina [~ 2300000] (imputed)	N
893	chr7	40468721	40468722	rs57670997	31194736	Tiensuu H	2019-06-13	PLoS Genet	Risk of spontaneous preterm birth and fetal growth associates with fetal SLIT2.	Spontaneous preterm birth (preterm birth)	247 Finnish ancestry infant cases, 419 Finnish ancestry infant controls	NA	7p14.1		rs57670997-?	NR	2E-6		1.7857143	[1.41-2.27]	Illumina [6778521] (imputed)	N
893	chr7	40476624	40476625	rs2329772	29273593	Duan L	2017-12-22	Stroke	Novel Susceptibility Loci for Moyamoya Disease Revealed by a Genome-Wide Association Study.	Moyamoya disease	755 Han Chinese ancestry cases, 2,031 Han Chinese ancestry controls	724 Han Chinese ancestry cases, 3,043 Han Chinese ancestry controls	7p14.1	NR	rs2329772-A	0.48	6E-6		1.3	[NR]	Illumina [747089]	N
893	chr7	40477362	40477363	rs1319467	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	7p14.1		rs1319467-G	NR	8E-20		0.0227	[0.018-0.028] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
893	chr7	40477362	40477363	rs1319467	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	145,445 East Asian ancestry individuals	NA	7p14.1		rs1319467-G	0.644483	4E-8		0.0193249	[0.012-0.026] unit increase	Illumina [13477769] (imputed)	N
893	chr7	40481811	40481812	rs2329775	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	7p14.1	NR	rs2329775-?	NR	5E-6	(EA)	0.2225	[0.13-0.32] unit decrease	Illumina [up to 11892802] (imputed)	N
894	chr7	40506398	40506399	rs10269234	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels	18,590 European ancestry individuals	NA	7p14.1		rs10269234-?	NR	1E-6		0.12	[0.073-0.167] unit increase	Affymetrix, Illumina [NR] (imputed)	N
894	chr7	40541258	40541259	rs9690969	30678657	Westphal S	2019-01-24	BMC Cardiovasc Disord	Genome-wide association study of myocardial infarction, atrial fibrillation, acute stroke, acute kidney injury and delirium after cardiac surgery - a sub-analysis of the RIPHeart-Study.	Postoperative myocardial infarction after cardiac surgery	87 cases, 939 controls	NA	7p14.1	SUGCT	rs9690969-?	NR	1E-6	(adjusted for atrial fibrillation, delirium, renal failure and stroke)	2.2727273	[1.64-3.23]	Illumina [9007469] (imputed)	N
894	chr7	40575116	40575117	rs142793313	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-4 levels	8,124 Finnish ancestry individuals	NA	7p14.1	NR	rs142793313-G		6E-6		0.4093	[0.23-0.59] SD units increase	NR [10700000] (imputed)	N
895	chr7	40653683	40653684	rs6462986	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Dorea)	1,068 Japanese ancestry individuals	NA	7p14.1	SUGCT	rs6462986-A	0.22	7E-6		0.0378	[0.022-0.054] unit increase	Illumina [6380737] (imputed)	N
895	chr7	40697193	40697194	rs576468798	34103634	Valette K	2021-06-08	Commun Biol	Prioritization of candidate causal genes for asthma in susceptibility loci derived from UK Biobank.	Asthma	56,167 White-British ancestry cases, 352,255 White-British ancestry controls	NA	7p14.1	SUGCT	rs576468798-T	1.58558607340727E-4	2E-8		2.0115917	[1.31-2.71] unit increase	Affymetrix [35186738] (imputed)	N
895	chr7	40742901	40742902	rs117548309	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 13, vertical position of alar curvature relative to upper lip)	2,187 European ancestry individuals	NA	7p14.1	NR	rs117548309-G	0.05571	2E-6		0.3102	[0.18-0.44] unit increase	Illumina [10677593] (imputed)	N
895	chr7	40752063	40752064	rs117415826	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-4 levels	8,124 Finnish ancestry individuals	NA	7p14.1	NR	rs117415826-G		6E-6		0.3464	[0.2-0.5] SD units decrease	NR [10700000] (imputed)	N
896	chr7	40816464	40816465	rs2329877	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	7p14.1		rs2329877-?	NR	2E-12				NR [~ 8900000] (imputed)	N
896	chr7	40816652	40816653	rs17439448	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	7p14.1	NR	rs17439448-C	0.8794	3E-8		0.0404	[0.026-0.055] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
896	chr7	40816652	40816653	rs17439448	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	7p14.1	NR	rs17439448-C	0.8842	4E-9		0.0393	[0.026-0.052] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
896	chr7	40836520	40836521	rs17620991	26365420	Mbarek H	2015-09-14	Am J Med Genet B Neuropsychiatr Genet	The genetics of alcohol dependence: Twin and SNP-based heritability, and genome-wide association study based on AUDIT scores.	Alcohol dependence	1,374 European ancestry cases and 6,468 European ancestry controls from 7,694 twin pairs	NA	7p14.1	c7orf10	rs17620991-C	0.14	6E-6		1.3333333	[1.22-1.45]	Affymetrix, Illumina, Perlegen [6464174] (imputed)	N
896	chr7	40866662	40866663	rs17688601	29422604	Klein AP	2018-02-08	Nat Commun	Genome-wide meta-analysis identifies five new susceptibility loci for pancreatic cancer.	Pancreatic cancer	9,040 European ancestry cases, 12,496 European ancestry controls	up to 2,737 cases, up to 4,752 controls	7p14.1	SUGCT	rs17688601-C	0.73	1E-8		1.1363636	[1.08-1.19]	Illumina [11381182] (imputed)	N
896	chr7	40866662	40866663	rs17688601	26098869	Childs EJ	2015-06-22	Nat Genet	Common variation at 2p13.3, 3q29, 7p13 and 17q25.1 associated with susceptibility to pancreatic cancer.	Pancreatic cancer	7,638 cases, 7,364 controls	2,287 cases, 4,205 controls	7p14.1	SUGCT	rs17688601-C	0.737	1E-8		1.1363636	[1.09-1.19]	Illumina [866891] (imputed)	N
896	chr7	40869753	40869754	rs6462989	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	7p14.1	NR	rs6462989-A	0.659423	2E-9		0.00798825	[0.0053-0.0107] unit increase	Affymetrix [16578495] (imputed)	N
896	chr7	40870934	40870935	rs10279715	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	7p14.1	SUGCT	rs10279715-G	NR	3E-8		0.0172151	[0.011-0.023] unit increase	Affymetrix [323858] (imputed)	N
896	chr7	40870934	40870935	rs10279715	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	7p14.1	NR	rs10279715-A	0.537868	1E-9		0.0183219	[0.012-0.024] unit increase	Affymetrix [16577313] (imputed)	N
896	chr7	40870934	40870935	rs10279715	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	7p14.1	NR	rs10279715-A	0.53735	1E-12		0.014209	[0.01-0.018] unit increase	Affymetrix [16583148] (imputed)	N
896	chr7	40870934	40870935	rs10279715	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	7p14.1	NR	rs10279715-A	0.537882	3E-13		0.0217388	[0.016-0.028] unit increase	Affymetrix [16577424] (imputed)	N
896	chr7	40873915	40873916	rs9639838	35132056	Mitchell BL	2022-02-07	Nat Commun	Genome-wide association meta-analysis identifies 29 new acne susceptibility loci.	acne vulgaris	20,165 European ancestry cases, 595,231 European ancestry controls	NA	7p14.1	NR	rs9639838-T	0.2087	3E-11		1.1	[1.07-1.13]	Affymetrix, Illumina [7072771] (imputed)	N
896	chr7	40874144	40874145	rs7809237	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	7p14.1	NR	rs7809237-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
896	chr7	40874375	40874376	rs7809981	30542056	Petridis C	2018-12-12	Nat Commun	Genome-wide meta-analysis implicates mediators of hair follicle development and morphogenesis in risk for severe acne.	Acne (severe)	5,602 European ancestry cases, 21,120 European ancestry controls	NA	7p14.1	Intergenic	rs7809981-T	0.24	3E-8		1.15	[1.09-1.20]	Illumina [up to 7441713] (imputed)	N
896	chr7	40875191	40875192	rs17621345	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	7p14.1	SUGCT	rs17621345-A	0.74	7E-14		1.07	[1.05-1.09]	Illumina [20370935] (imputed)	N
896	chr7	40877472	40877473	rs12701838	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	7p14.1	NR	rs12701838-A	NR	2E-14		1.065	[1.05-1.08]	Affymetrix, Illumina [29235255] (imputed)	N
897	chr7	40913628	40913632	rs10544956	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	7p14.1		rs10544956-C	0.413363	4E-9		0.013302873	[0.0089-0.0177] unit increase	Affymetrix [93095623] (imputed)	N
897	chr7	40913645	40913646	rs6462990	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	7p14.1		rs6462990-C	0.411137	1E-10		0.014502582	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
897	chr7	40913645	40913646	rs6462990	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	7p14.1		rs6462990-?	NR	2E-10				NR [~ 8900000] (imputed)	N
897	chr7	40918069	40918070	rs7801303	24571439	Nudel R	2014-02-26	Genes Brain Behav	Genome-wide association analyses of child genotype effects and parent-of-origin effects in specific language impairment.	Parent of origin effect on language impairment (paternal)	153 European ancestry case-parent trios, 54 European ancestry case-mother duos, 12 European ancestry case-father duos, 18 European ancestry cases	NA	7p14.1	C7orf10, INHBA	rs7801303-?		4E-7				Illumina [614937]	N
897	chr7	40920312	40920313	rs17689040	28604728	Litchfield K	2017-06-12	Nat Genet	Identification of 19 new risk loci and potential regulatory mechanisms influencing susceptibility to testicular germ cell tumor.	Testicular germ cell tumor	5,518 European ancestry cases, 19,055 European ancestry controls	1,801 European ancestry cases, 4,027 European ancestry controls	7p14.1	intergenic	rs17689040-G	0.43	3E-11		1.15	[1.10-1.19]	Illumina [at least 371504] (imputed)	N
897	chr7	40954480	40954481	rs29880	19084217	Benyamin B	2008-12-17	Am J Hum Genet	Variants in TF and HFE explain approximately 40% of genetic variation in serum-transferrin levels.	Iron status biomarkers	459 European ancestry twin pairs	NA	7p14.1	Q4KMW4	rs29880-?	NR	7E-6	(serum ferritin)			Illumina [315887]	N
897	chr7	40966897	40966898	rs78777495	32562552	Chua KC	2020-06-20	Clin Pharmacol Ther	Genome-Wide Meta-Analysis Validates a Roless for S1PR1 in Microtubule Targeting Agent-Induced Sensory Peripheral Neuropathy.	Sensory peripheral neuropathy in microtubule targeting agent-treated breast cancer	1,324 European ancestry individuals	NA	7p14.1	SUGCT	rs78777495-?		3E-6		0.602	[NR] unit increase	Illumina [6030476] (imputed)	N
897	chr7	40987019	40987020	rs78017515	32562552	Chua KC	2020-06-20	Clin Pharmacol Ther	Genome-Wide Meta-Analysis Validates a Roless for S1PR1 in Microtubule Targeting Agent-Induced Sensory Peripheral Neuropathy.	Sensory peripheral neuropathy in microtubule targeting agent-treated breast cancer	1,324 European ancestry individuals	NA	7p14.1	SUGCT	rs78017515-?		6E-6		0.621	[NR] unit increase	Illumina [6030476] (imputed)	N
897	chr7	41024130	41024130	rs200674393	32180562	Kulyte A	2020-01-25	Mol Metab	Genome-wide association study of adipocyte lipolysis in the GENetics of adipocyte lipolysis (GENiAL) cohort.	Stimulated adipocyte lipolysis	874 European ancestry individuals	NA	7p14.1	NR	rs200674393-?	0.982579	2E-7		0.305	[0.19-0.42] unit increase	NR [9260588] (imputed)	N
898	chr7	41032091	41032092	rs62452914	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	150,266 East Asian ancestry individuals	NA	7p14.1		rs62452914-C	0.113739	3E-8		0.0248432	[0.016-0.034] unit increase	Illumina [13478778] (imputed)	N
898	chr7	41050855	41050856	rs73688224	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	7p14.1	NR	rs73688224-G	NR	6E-10		0.0432	[0.029-0.057] unit decrease	Affymetrix [9000000] (imputed)	N
898	chr7	41050855	41050856	rs73688224	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	7p14.1	NR	rs73688224-G	NR	3E-10		0.0442	[0.03-0.058] unit increase	Affymetrix [9000000] (imputed)	N
898	chr7	41068571	41068572	rs78503047	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	7p14.1		rs78503047-T	NR	6E-16		0.0294	[0.022-0.036] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
898	chr7	41068571	41068572	rs78503047	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	7p14.1	LINC01450	rs78503047-T	0.089	2E-9		0.0045	[0.0031-0.0059] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
898	chr7	41068571	41068572	rs78503047	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	165,726 East Asian ancestry individuals	NA	7p14.1	LINC01450	rs78503047-T	0.1298	2E-6		0.0048	[0.0028-0.0068] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
899	chr7	41188514	41188515	rs29482	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	7p14.1	NR	rs29482-A	0.668	8E-10		0.00700959	[0.0048-0.0092] unit decrease	NR [9732723] (imputed)	N
899	chr7	41216676	41216677	rs28176	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	7p14.1		rs28176-?	NR	3E-9				NR [~ 8900000] (imputed)	N
899	chr7	41222967	41222968	rs113052989	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris color (a* coordinate)	329 South Asian ancestry individuals		7p14.1	intergenic	rs113052989-T	0.829808	4E-6		0.484816	[0.28-0.69] unit increase	Illumina [640625] (imputed)	N
899	chr7	41275503	41275504	rs12019358	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	7p14.1	NR	rs12019358-?	NR	5E-6				Affymetrix [5486770] (imputed)	N
900	chr7	41301019	41301020	rs117266781	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-18 levels	3,636 Finnish ancestry individuals	NA	7p14.1	NR	rs117266781-C		3E-6		0.6841	[0.4-0.97] SD units decrease	NR [10700000] (imputed)	N
900	chr7	41303980	41303981	rs73089888	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	7p14.1	Intergenic	rs73089888-C	NR	2E-6	(women)	0.0395589	[0.023-0.056] unit increase	Illumina [13520550] (imputed)	N
900	chr7	41392449	41392450	rs10244501	28843169	Neumann A	2017-08-12	Psychoneuroendocrinology	The low single nucleotide polymorphism heritability of plasma and saliva cortisol levels.	Cortisol levels (saliva)	7,703 European ancestry individuals	NA	7p14.1	INHBA	rs10244501-T	0.19	1E-6		0.11	[0.071-0.149] unit increase	Illumina, Perlegen [2156702] (imputed)	N
900	chr7	41408000	41408001	rs77969347	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	7p14.1		rs77969347-?	NR	7E-10				NR [~ 8900000] (imputed)	N
901	chr7	41467945	41467946	rs4141153	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	7p14.1		rs4141153-?	NR	8E-32				NR [~ 8900000] (imputed)	N
901	chr7	41467945	41467946	rs4141153	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Menarche (age at onset)	76,831 European ancestry individuals	NA	7p14.1	C7orf10, INHBA	rs4141153-?	NR	4E-10		0.034	[0.023-0.044] unit increase	Illumina [12039492]	N
901	chr7	41470092	41470093	rs1079866	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	7p14.1	NR	rs1079866-G	NR	3E-10		0.0222	[0.015-0.029] unit increase	Affymetrix [9000000] (imputed)	N
901	chr7	41470092	41470093	rs1079866	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	7p14.1	INHBA	rs1079866-G	0.15	9E-24		0.07	[0.056-0.084] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
901	chr7	41470092	41470093	rs1079866	21102462	Elks CE	2010-11-21	Nat Genet	Thirty new loci for age at menarche identified by a meta-analysis of genome-wide association studies.	Menarche (age at onset)	86,142 European ancestry female individuals, 557 Old Order Amish (founder/genetic isolate) female individuals, 1,103 Erasmus Rucphen (founder/genetic isolate) female individuals	Up to 12,813 European ancestry female individuals, 910 Val Borbera (founder/genetic isolate) female individuals, 348 Orcadian (founder/genetic isolate) female individuals, 338 Friuli Venezia Giulia (founder/genetic isolate) female individuals, 322 Carlantino (founder/genetic/isolate) female individuals	7p14.1	INHBA	rs1079866-G	0.15	6E-14		3.9	[2.92-4.88] week increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
901	chr7	41478607	41478608	rs10486715	19197348	Lowe JK	2009-02-06	PLoS Genet	Genome-wide association studies in an isolated founder population from the Pacific Island of Kosrae.	Quantitative traits	2,906 Kosraen individuals	NA	7p14.1	intergenic	rs10486715-A	0.07	3E-6	(height)	0.44	[NR] inch decrease	Affymetrix [408775]	N
902	chr7	41622529	41622530	rs4724055	23942779	McGue M	2013-08-14	Behav Genet	A genome-wide association study of behavioral disinhibition.	Non-substance related behavioral disinhibition	7,188 European ancestry individuals	NA	7p14.1	NR	rs4724055-C	0.03	8E-6		4.917	[NR] unit increase	Illumina [527829]	N
902	chr7	41671058	41671059	rs17637848	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	7p14.1	NR	rs17637848-T	0.075	8E-6	(IFNgamma_STAT4_of_Monocytes)			Illumina [5084123] (imputed)	N
903	chr7	41720762	41720763	rs11760407	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	7p14.1	AC005027.3	rs11760407-T	0.2481	1E-8		0.1146	[0.075-0.154] unit increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
903	chr7	41730930	41730931	rs2237436	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	7p14.1	NR	rs2237436-C	NR	5E-7		1.06	[NR]	Illumina [7158791] (imputed)	N
903	chr7	41743293	41743294	rs2877098	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine without aura	7,107 European ancestry cases, 69,427 European ancestry controls	NA	7p14.1	intergenic	rs2877098-?	0.66	2E-6		1.11	[1.06-1.16]	Affymetrix, Illumina [~ 2300000] (imputed)	N
903	chr7	41746921	41746922	rs7808613	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	7p14.1	NR	rs7808613-C	0.755349	1E-9		0.00795395	[0.0053-0.0106] unit increase	Affymetrix [16582621] (imputed)	N
903	chr7	41746921	41746922	rs7808613	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	7p14.1	NR	rs7808613-C	0.755349	6E-8		0.00760817	[0.0048-0.0104] unit increase	Affymetrix [16582614] (imputed)	N
903	chr7	41750490	41750490	rs142220572	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	7p14.1	NR	rs142220572-T	0.821606	2E-8		0.0142998	[0.0093-0.0193] unit decrease	Affymetrix [15000001]	N
903	chr7	41811907	41811908	rs10486722	23470693	Zeng Z	2013-03-07	J Dent Res	Genome-wide association studies of pit-and-fissure- and smooth-surface caries in permanent dentition.	Pit-and-Fissure caries	996 European ancestry individuals		7p14.1	INHBA-AS1, INHBA	rs10486722-C	0.3349	7E-6		1.215	[NR] unit increase	Illumina [1200000] (imputed)	N
904	chr7	41818910	41818911	rs2214873	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	7p14.1	GLI3	rs2214873-?	NR	5E-6	(leucine)	0.22676843	[0.13-0.32] unit decrease	Affymetrix [at least 2500000] (imputed)	N
904	chr7	41820154	41820155	rs7796103	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	7p14.1		rs7796103-C	0.5168	4E-8		0.0077	[0.005-0.0104] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
905	chr7	42003499	42003500	rs2051935	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	7p14.1	Intergenic	rs2051935-A	0.357	9E-10	(MTAG)	0.0115	[0.0078-0.0152] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
905	chr7	42003499	42003500	rs2051935	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	7p14.1	Intergenic	rs2051935-A	0.3572	6E-13	(MTAG)	0.0124	[0.0091-0.0157] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
905	chr7	42003499	42003500	rs2051935	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	7p14.1	Intergenic	rs2051935-A	0.3579	5E-11	(MTAG)	0.009	[0.0063-0.0117] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
905	chr7	42003499	42003500	rs2051935	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	7p14.1	Intergenic	rs2051935-A	0.3532	2E-8	(MTAG)	0.0136	[0.0089-0.0183] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
905	chr7	42005677	42005678	rs929387	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	7p14.1		rs929387-A	0.32	1E-16		8.26	z score increase	Affymetrix [9061022] (imputed)	N
905	chr7	42005677	42005678	rs929387	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	7p14.1		rs929387-A	0.32	2E-14		7.64	z score increase	Affymetrix [9061022] (imputed)	N
905	chr7	42005677	42005678	rs929387	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	7p14.1	NR	rs929387-A	0.3144	1E-12				NR [9056863] (imputed)	N
905	chr7	42007070	42007071	rs4724083	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	7p14.1		rs4724083-T	0.32	3E-18		8.73	z score increase	Affymetrix [9061022] (imputed)	N
905	chr7	42007070	42007071	rs4724083	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	7p14.1		rs4724083-T	0.3227	4E-8		0.0083	[0.0054-0.0112] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
905	chr7	42009394	42009395	rs3801159	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	7p14.1	NR	rs3801159-C	0.3184	8E-15				NR [9056863] (imputed)	N
905	chr7	42011463	42011464	rs10263647	33891350	Vann CG	2021-05-01	FASEB J	An intron variant of the GLI family zinc finger 3 (GLI3) gene differentiates resistance training-induced muscle fiber hypertrophy in younger men.	Response to resistance training (vastus lateralis fiber area change)	109 men	NR	7p14.1	GLI3	rs10263647-?	NR	2E-6				NR [315000]	N
905	chr7	42011955	42011956	rs199606102	34387878	Kim KY	2021-08-13	Hepatology	Genome-wide association of individual vulnerability with alcoholic liver disease: A Korean Genome and Epidemiology Study.	Alcohol-associated liver disease in non drinkers	782 Korean ancestry cases, 18,058 Korean ancestry controls	NA	7p14.1		rs199606102-?	NR	7E-7		2.523	[1.751-3.635]	Affymetrix [7975321] (imputed)	N
905	chr7	42023399	42023400	rs2299148	26528553	Davenport ER	2015-11-03	PLoS One	Genome-Wide Association Studies of the Human Gut Microbiota.	Gut microbiome composition (summer)	91 Hutterite individuals	NA	7p14.1	NR	rs2299148-?	NR	7E-6	(genus_Desulfovibrio)	0.5819566	[0.28-0.88] unit decrease	Affymetrix [210924]	N
905	chr7	42036836	42036837	rs846271	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	7p14.1	NR	rs846271-C	0.628956223807401	2E-6	(IGP30)	0.1538	[0.09-0.218] unit decrease	Illumina [~ 2500000] (imputed)	N
905	chr7	42040985	42040986	rs10233459	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls, 2,149 African ancestry cases, 6,055 African ancestry controls, 1,239 Japanese ancestry cases, 3,976 Japanese ancestry controls, 606 Latino cases, 792 Latino controls	NA	7p14.1	GLI3, INHBA, C7orf25	rs10233459-G	0.05	4E-6	(African)	1.57	[1.30-1.91]	Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
905	chr7	42046839	42046840	rs398004559	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	7p14.1		rs398004559-T	NR	6E-10		0.015	[0.01-0.02] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
905	chr7	42061522	42061523	rs2299142	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	7p14.1	GLI3	rs2299142-C	0.570494	1E-11		0.00152348	[0.0011-0.002] unit decrease	Affymetrix [13995440] (imputed)	N
905	chr7	42061985	42061986	rs846274	33692830	Indencleef K	2021-02-22	Front Genet	The Intersection of the Genetic Architectures of Orofacial Clefts and Normal Facial Variation.	Facial morphology traits (59 NSCL/P endophenotypic segments)	8,246 European ancestry individuals	NA	7p14.1	NR	rs846274-?	NR	4E-8	(Quadrant II (Nose), Segment 45)	0.023222925	NR unit decrease	NR [7417619] (imputed)	N
906	chr7	42092754	42092755	rs9791676	30898391	Lawrenson K	2019-03-19	Gynecol Oncol	Genome-wide association studies identify susceptibility loci for epithelial ovarian cancer in east Asian women.	Epithelial ovarian cancer	3,238 East Asian ancestry cases, 4,083 East Asian ancestry controls	NA	7p14.1		rs9791676-?	NR	8E-6	(clearcell)	1.96		Illumina [11595112] (imputed)	N
906	chr7	42100930	42100931	rs2237422	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7p14.1		rs2237422-?	NR	1E-9				NR [~ 8900000] (imputed)	N
906	chr7	42115515	42115516	rs7793034	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	7p14.1	GLI3	rs7793034-?		1E-10				Affymetrix, Illumina [NR] (imputed)	N
906	chr7	42131389	42131390	rs17640804	27193062	Adhikari K	2016-05-19	Nat Commun	A genome-wide association scan implicates DCHS2, RUNX2, GLI3, PAX1 and EDAR in human facial variation.	middle facial morphology traits (quantitative measurement)	2955 Latin American ancestry individuals.	NA	7p14.1	GLI3	rs17640804-T	NR	5E-10	(Nose wing breadth)	4.9E-4	NR decrease	Illumina [9117642] (imputed)	N
906	chr7	42131389	42131390	rs17640804	27193062	Adhikari K	2016-05-19	Nat Commun	A genome-wide association scan implicates DCHS2, RUNX2, GLI3, PAX1 and EDAR in human facial variation.	facial morphology traits (multivariate analysis)	5,958 Latin American ancestry individuals.	NA	7p14.1	GLI3	rs17640804-?		3E-7				Illumina [9117642] (imputed)	N
906	chr7	42131948	42131949	rs62443772	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 22)	3,566 European ancestry individuals	4,680 European ancestry individuals	7p14.1		rs62443772-A	0.208016878	5E-16				Illumina [7417619] (imputed)	N
906	chr7	42148187	42148188	rs10269139	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	7p14.1	NR	rs10269139-?	NR	9E-8		0.13109	[0.083-0.179] unit increase	Affymetrix [7794483] (imputed)	N
906	chr7	42148187	42148188	rs10269139	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	7p14.1	NR	rs10269139-?	NR	3E-8	(male)	0.21545	[0.14-0.29] unit increase	Affymetrix [7794483] (imputed)	N
906	chr7	42176281	42176282	rs2049622	23326517	Holliday EG	2013-01-11	PLoS One	Insights into the genetic architecture of early stage age-related macular degeneration: a genome-wide association study meta-analysis.	Age-related macular degeneration	3,772 European ancestry cases, 16,033 European ancestry controls	264 Asian ancestry cases, 3,926 Asian ancestry controls	7p14.1	GLI3	rs2049622-?	0.51	9E-6	(EA)	1.15	[1.08-1.2]	Affymetrix, Illumina [~ 2500000] (imputed)	N
906	chr7	42176872	42176873	rs146961637	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Emotional recognition	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	7p14.1	GLI3	rs146961637-T	NR	6E-6		0.5761249	[0.32-0.83] unit decrease	NR [> 6200000] (imputed)	N
906	chr7	42184082	42184083	rs79099151	31250787	Fawns-Ritchie C	2019-06-01	Twin Res Hum Genet	Genetic Contributions to Health Literacy.	Health literacy	1,771 English ancestry cases, 4,012 English ancestry controls	NA	7p14.1	GLI3	rs79099151-T	NR	8E-7		0.02936	[0.018-0.041] unit increase	Illumina [NR] (imputed)	N
906	chr7	42187850	42187851	rs146458902	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Height	458,235 European ancestry individuals	NA	7p14.1		rs146458902-?	NR	1E-15		0.0795252	[0.059-0.1] unit increase	NR [9800000] (imputed)	N
906	chr7	42188399	42188400	rs3801203	28577822	Deters KD	2017-05-31	Brain Lang	Genome-wide association study of language performance in Alzheimer's disease.	Language performance in older adults (adjusted for episodic memory)	310 European ancestry Alzheimer's disease individuals, 511 European ancestry individuals with late mild cognitive impairment, 280 European ancestry individuals with early mild cognitive impairment, 94 European ancestry individuals with significant memory concern, 365 European ancestry individuals with normal cognition	NA	7p14.1	GLI3	rs3801203-A	0.19	3E-9		0.261	[0.17-0.35] unit decrease	Illumina [5574300] (imputed)	N
906	chr7	42190713	42190714	rs77640775	29659830	Warrington NM	2018-04-12	Hum Mol Genet	Genome-wide association study identifies nine novel loci for 2D:4D finger ratio, a putative retrospective biomarker of testosterone exposure in utero.	Digit length ratio (right hand)	12,636 European ancestry individuals	NA	7p14.1	GLI3	rs77640775-A	0.137	9E-6		0.262	[0.15-0.38] unit decrease	Illumina [8400000] (imputed)	N
906	chr7	42190713	42190714	rs77640775	29659830	Warrington NM	2018-04-12	Hum Mol Genet	Genome-wide association study identifies nine novel loci for 2D:4D finger ratio, a putative retrospective biomarker of testosterone exposure in utero.	Digit length ratio (left hand)	14,382 European ancestry individuals, 1,279 non-European ancestry individuals	NA	7p14.1	GLI3	rs77640775-A	0.137	2E-6	(EA)	0.252	[0.15-0.36] unit decrease	Illumina [8400000] (imputed)	N
906	chr7	42190713	42190714	rs77640775	29659830	Warrington NM	2018-04-12	Hum Mol Genet	Genome-wide association study identifies nine novel loci for 2D:4D finger ratio, a putative retrospective biomarker of testosterone exposure in utero.	Digit length ratio (left hand)	14,382 European ancestry individuals, 1,279 non-European ancestry individuals	NA	7p14.1	GLI3	rs77640775-A	0.136	2E-6		0.241	[0.14-0.34] unit decrease	Illumina [8400000] (imputed)	N
906	chr7	42190713	42190714	rs77640775	29659830	Warrington NM	2018-04-12	Hum Mol Genet	Genome-wide association study identifies nine novel loci for 2D:4D finger ratio, a putative retrospective biomarker of testosterone exposure in utero.	Digit length ratio	12,586 European ancestry individuals	NA	7p14.1	GLI3	rs77640775-A	0.137	4E-8		0.291	[0.19-0.39] unit decrease	Illumina [8400000] (imputed)	N
906	chr7	42204284	42204285	rs71538647	31250787	Fawns-Ritchie C	2019-06-01	Twin Res Hum Genet	Genetic Contributions to Health Literacy.	Health literacy	1,771 English ancestry cases, 4,012 English ancestry controls	NA	7p14.1	GLI3	rs71538647-C	NR	4E-6		0.0275	[0.016-0.039] unit increase	Illumina [NR] (imputed)	N
907	chr7	42219567	42219568	rs57734857	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	7p14.1	GLI3	rs57734857-A	0.7958	6E-11		0.0154	[0.011-0.02] unit decrease	Affymetrix [18391927] (imputed)	N
907	chr7	42219567	42219568	rs57734857	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7p14.1		rs57734857-?	NR	4E-9				NR [~ 8900000] (imputed)	N
907	chr7	42250420	42250421	rs1019042	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	7p14.1	GLI3	rs1019042-A	NR	1E-11		0.0206484	[0.015-0.027] unit increase	Affymetrix [321788] (imputed)	N
907	chr7	42254500	42254501	rs1468452	31151762	Gelernter J	2019-04-08	Biol Psychiatry	Genome-wide Association Study of Maximum Habitual Alcohol Intake in >140,000 U.S. European and African American Veterans Yields Novel Risk Loci.	Maximum habitual alcohol consumption	126,936 European ancestry individuals, 17,029 African American individuals	NA	7p14.1	NR	rs1468452-C	NR	9E-6	(AA)	0.129278	[0.072-0.186] unit decrease	Affymetrix [up to 6007810] (imputed)	N
907	chr7	42264678	42264679	rs4724100	22036096	Ramasamy A	2011-11-01	J Allergy Clin Immunol	A genome-wide meta-analysis of genetic variants associated with allergic rhinitis and grass sensitization and their interaction with birth order.	Allergic rhinitis	3,933 European ancestry cases, 8,965 European ancestry controls	NA	7p14.1	GLI3	rs4724100-C	0.45	2E-6		1.14	[1.08-1.21]	Affymetrix, Illumina [2217510] (imputed)	N
907	chr7	42281480	42281481	rs6463094	26528553	Davenport ER	2015-11-03	PLoS One	Genome-Wide Association Studies of the Human Gut Microbiota.	Gut microbiome composition (summer)	91 Hutterite individuals	NA	7p14.1	NR	rs6463094-?	NR	4E-6	(genus_Desulfovibrio)	0.4885327	[0.24-0.74] unit decrease	Affymetrix [210924]	N
907	chr7	42287751	42287752	rs6956494	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	7p14.1		rs6956494-?	NR	1E-8				NR [~ 8900000] (imputed)	N
907	chr7	42325624	42325625	rs12532960	22228203	Aslibekyan S	2012-01-05	Pharmacogenet Genomics	A genome-wide association study of inflammatory biomarker changes in response to fenofibrate treatment in the Genetics of Lipid Lowering Drug and Diet Network.	Inflammatory biomarkers	1,092 European ancestry individuals	NA	7p14.1	intergenic	rs12532960-?	NR	3E-7	(hsCRP-IL6 pattern prefenofibrate)			Affymetrix [2543887] (imputed)	N
907	chr7	42325736	42325737	rs113894310	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels	3,806 African American individuals	NA	7p14.1		rs113894310-?	NR	8E-7		0.49	[0.3-0.68] unit increase	Affymetrix, Illumina [NR] (imputed)	N
908	chr7	42374401	42374402	rs2108370	26528553	Davenport ER	2015-11-03	PLoS One	Genome-Wide Association Studies of the Human Gut Microbiota.	Gut microbiome composition (summer)	91 Hutterite individuals	NA	7p14.1	NR	rs2108370-?	NR	2E-6	(genus_Anaerotruncus)	0.9657791	[0.54-1.39] unit decrease	Affymetrix [210924]	N
908	chr7	42384619	42384620	rs7791745	24376456	Simino J	2013-12-12	Front Genet	Gene-alcohol interactions identify several novel blood pressure loci including a promising locus near SLC16A9.	Mean arterial pressure (alcohol consumption interaction)	up to 6,882 individuals	NA	7p14.1	GLI3	rs7791745-T	0.8	7E-7	(drinks/week)	0.196	[0.12-0.27] unit decrease	Affymetrix [2500000] (imputed)	N
909	chr7	42493973	42493974	rs150749209	31996736	Elsheikh SSM	2020-01-29	Sci Rep	Genome-Wide Association Study of Brain Connectivity Changes for Alzheimer's Disease.	Longitudinal brain connectivity change (Louvain modularity)	57 European ancestry individuals	NA	7p14.1	NR	rs150749209-T	NR	3E-6		4.66	z score decrease	NR [9015039] (imputed)	N
909	chr7	42567076	42567077	rs66771402	34404834	Sin S	2021-08-17	Sci Rep	A genome-wide association study of quantitative computed tomographic emphysema in Korean populations.	Emphysema	514 Korean ancestry COPD individuals, 34 Korean ancestry non COPD individuals	NA	7p14.1		rs66771402-?	NR	5E-7		0.36	[0.22-0.5] unit increase	NR [599248] (imputed)	N
909	chr7	42586155	42586156	rs192098482	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	7p14.1	NR	rs192098482-?	NR	5E-10				Illumina [7760689] (imputed)	N
910	chr7	42606912	42606913	rs76990766	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	7p14.1	LINC01448	rs76990766-C	0.94847	3E-28		0.0452763	[0.037-0.053] unit decrease	NR [13737936] (imputed)	N
910	chr7	42606912	42606913	rs76990766	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	7p14.1		rs76990766-?	NR	2E-24				NR [~ 8900000] (imputed)	N
910	chr7	42606912	42606913	rs76990766	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	7p14.1		rs76990766-?	NR	1E-23		0.0469767	[0.038-0.056] unit decrease	Affymetrix [20259828] (imputed)	N
910	chr7	42667875	42667876	rs1568799	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	7p14.1	AC027269.2	rs1568799-C	NR	7E-10		0.0187108	[0.013-0.025] unit decrease	Affymetrix [319769] (imputed)	N
910	chr7	42667875	42667876	rs1568799	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	7p14.1	AC027269.2	rs1568799-C	NR	4E-10		0.0189839	[0.013-0.025] unit decrease	Affymetrix [319769] (imputed)	N
910	chr7	42667875	42667876	rs1568799	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	7p14.1	NR	rs1568799-?	NR	3E-11				Affymetrix [~ 8270000] (imputed)	N
910	chr7	42667875	42667876	rs1568799	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	7p14.1		rs1568799-?	NR	1E-12				NR [~ 8900000] (imputed)	N
910	chr7	42674505	42674506	rs35120307	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	7p14.1	AC027269.2	rs35120307-A	NR	3E-8		0.017281	[0.011-0.023] unit decrease	Affymetrix [321114] (imputed)	N
910	chr7	42674505	42674506	rs35120307	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	7p14.1	AC027269.2	rs35120307-A	NR	9E-9		0.0179794	[0.012-0.024] unit decrease	Affymetrix [321169] (imputed)	N
910	chr7	42692710	42692711	rs13223303	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	7p14.1	NR	rs13223303-T	0.7072	1E-10		0.014	[0.0097-0.0183] unit increase	NR [~ 27400000] (imputed)	N
910	chr7	42692710	42692711	rs13223303	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	7p14.1	NR	rs13223303-T	0.7073	9E-7		0.0106	[0.0063-0.0149] unit increase	NR [~ 27400000] (imputed)	N
910	chr7	42696501	42696502	rs2330627	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	7p14.1		rs2330627-?	NR	1E-18		0.0232084	[0.018-0.028] unit decrease	Affymetrix [20259828] (imputed)	N
910	chr7	42702851	42702852	rs186195700	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	7p14.1		rs186195700-C	NR	2E-6		6.9092	[4.1-9.72] unit increase	Illumina [NR] (imputed)	N
910	chr7	42708293	42708294	rs78318469	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7p14.1	NR	rs78318469-G	0.01394	2E-8	(WARS)	0.05702	NR unit increase	Illumina [1671387] (imputed)	N
910	chr7	42712649	42712650	rs1504841	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	7p14.1	NR	rs1504841-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
911	chr7	42729854	42729855	rs4724125	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	7p14.1	NR	rs4724125-?	NR	3E-15				Illumina [at least 7383741] (imputed)	N
912	chr7	42933580	42933581	rs57905760	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	7p14.1		rs57905760-A	NR	2E-9		0.0121	[0.0082-0.016] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
912	chr7	42979941	42979942	rs10486743	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	7p14.1	NR	rs10486743-A	0.96	7E-7	(male)	0.3241	[0.2-0.45] unit increase	Illumina [11133794] (imputed)	N
912	chr7	42986004	42986005	rs672279	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	7p14.1		rs672279-?	NR	3E-13				NR [9705931] (imputed)	N
913	chr7	43030977	43030978	rs986413	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (min-P)	26,502 European ancestry individuals	NA	7p14.1	CRB1, DENND1B	rs986413-?		2E-8				NR [7428630] (imputed)	N
913	chr7	43042862	43042863	rs7798146	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	7p14.1	EPHA4	rs7798146-?		9E-13				NR [7428630] (imputed)	N
913	chr7	43044465	43044466	rs2877187	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in ever smokers	23,223 European ancestry cases,  16,964 European ancestry controls	NA	7p14.1	MRPL32, HECW1	rs2877187-T	0.227358385	7E-6		1.082824	[1.045943506-1.121004821]	Illumina [10439017] (imputed)	N
913	chr7	43046681	43046682	rs7782219	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	7p14.1		rs7782219-A	0.26	4E-35		12.36	z score increase	Affymetrix [9061022] (imputed)	N
913	chr7	43046681	43046682	rs7782219	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	7p14.1	NR	rs7782219-A	0.2368	1E-17				NR [9056863] (imputed)	N
913	chr7	43046681	43046682	rs7782219	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	7p14.1	PSMA2, MRPL32	rs7782219-?		2E-13				NR [7428630] (imputed)	N
913	chr7	43059466	43059467	rs11770051	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	7p14.1		rs11770051-T	0.26	4E-51		15.04	z score increase	Affymetrix [9061022] (imputed)	N
913	chr7	43059466	43059467	rs11770051	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	7p14.1	NR	rs11770051-T	0.2411	1E-17				NR [9056863] (imputed)	N
913	chr7	43061236	43061237	rs10951709	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	7p14.1		rs10951709-C	0.23	9E-20		9.1	z score increase	Affymetrix [9061022] (imputed)	N
914	chr7	43158476	43158477	rs2024125	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	7p14.1	HECW1	rs2024125-G	0.458	6E-6	(Diet carbohydrate )	0.02	[NR] %energy increase	Illumina [899892]	N
914	chr7	43215613	43215614	rs7810100	29559693	Zengini E	2018-03-20	Nat Genet	Genome-wide analyses using UK Biobank data provide insights into the genetic architecture of osteoarthritis.	Osteoarthritis (self-reported)	12,658 European ancestry cases, 50,898 European ancestry controls		7p14.1	NR	rs7810100-T	0.183686	6E-7		1.08533	[1.04798-1.124]	Affymetrix [16499239] (imputed)	N
914	chr7	43226640	43226641	rs73099645	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	7p14.1	NR	rs73099645-?	NR	1E-6	(Latino)	0.6507	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
915	chr7	43285684	43285685	rs184603716	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD127 on CD28+ CD45RA+ CD8+ T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	7p14.1		rs184603716-A	0.00662	3E-8		0.8708	[0.56-1.18] unit increase	Illumina [17954496] (imputed)	N
915	chr7	43286838	43286839	rs17172185	24121790	Levine DM	2013-10-13	Nat Genet	A genome-wide association study identifies new susceptibility loci for esophageal adenocarcinoma and Barrett's esophagus.	Esophageal adenocarcinoma	1,516 European ancestry cases, 3,209 European ancestry controls	874 European ancestry cases, 6,911 European ancestry controls	7p14.1	NR	rs17172185-T	0.946	5E-6		1.4706	[1.25-1.75]	Illumina [922031]	N
915	chr7	43320412	43320413	rs9648078	31786426	Farias Tempaku P	2019-08-14	Sleep Med	Genome-wide association study reveals two novel risk alleles for incident obstructive sleep apnea in the EPISONO cohort.	Obstructive sleep apnea trait (apnea hypopnea index, change over time)	404 European ancestry individuals, 97 Black individuals, 20 Asian ancestry individuals, 20 Indigenous individuals, 138 mixed race individuals, 27 individuals	NA	7p14.1	NR	rs9648078-A	0.056	6E-8		0.2747	[0.18-0.37] unit increase	Illumina [up to 730525]	N
915	chr7	43320593	43320594	rs10231619	25102180	Ng MC	2014-08-07	PLoS Genet	Meta-analysis of genome-wide association studies in African Americans provides insights into the genetic architecture of type 2 diabetes.	Type 2 diabetes	8,284 African American cases, 15,543 African American controls	6,061 African American cases, 5,483 African American controls, 8,130 European ancestry cases, 38,987 European ancestry controls	7p14.1	HECW1	rs10231619-T	0.74	4E-6	(AA)	1.13	[1.07-1.18]	Affymetrix, Illumina [2579389] (imputed)	N
915	chr7	43334574	43334575	rs34610745	27397699	Pei YF	2016-07-07	Bone	Genome-wide association meta-analyses identified 1q43 and 2q32.2 for hip Ward's triangle areal bone mineral density.	Bone mineral density (Ward's triangle area)	4,305 European ancestry individuals,1,579 Chinese Han ancestry individuals, 845 African-American individuals, 446 Hispanic individuals		7p14.1	HECW1	rs34610745-G	NR	5E-6		0.2	[NR] unit increase	Affymetrix, Illumina [at least 9551331] (imputed)	N
915	chr7	43361007	43361008	rs4509217	31786426	Farias Tempaku P	2019-08-14	Sleep Med	Genome-wide association study reveals two novel risk alleles for incident obstructive sleep apnea in the EPISONO cohort.	Obstructive sleep apnea trait (apnea hypopnea index, change over time)	404 European ancestry individuals, 97 Black individuals, 20 Asian ancestry individuals, 20 Indigenous individuals, 138 mixed race individuals, 27 individuals	NA	7p13	NR	rs4509217-A	0.068	1E-6		0.2493	[0.15-0.35] unit increase	Illumina [up to 730525]	N
915	chr7	43370364	43370365	rs58394495	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7p13	NR	rs58394495-T	0.01916	2E-8	(CORO1B)	0.1931	NR unit increase	Illumina [1671387] (imputed)	N
915	chr7	43377275	43377276	rs17172199	23535033	Sherva R	2013-03-24	Alzheimers Dement	Genome-wide association study of the rate of cognitive decline in Alzheimer's disease.	Alzheimer's disease (cognitive decline)	303 European ancestry cases		7p13	HECW1	rs17172199-?	0.08	1E-6		0.28	unit decrease	Illumina [NR] (imputed)	N
915	chr7	43378843	43378844	rs978056	28187132	Kiryluk K	2017-02-10	PLoS Genet	GWAS for serum galactose-deficient IgA1 implicates critical genes of the O-glycosylation pathway.	Serum galactose-deficient IgA1 levels	950 Han Chinese ancestry individuals, 245 European ancestry individuals	653 East Asian ancestry individuals, 785 European ancestry individuals	7p13	HECW1	rs978056-A	NR	6E-6		0.13	[0.071-0.189] unit decrease	Illumina [468781]	N
916	chr7	43447789	43447790	rs10255565	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	7p13	LUARIS	rs10255565-C	0.154	1E-6		0.086	[0.051-0.121] unit decrease	Affymetrix, Illumina [7374092] (imputed)	N
917	chr7	43531733	43531734	rs61756577	28585551	Sigurdsson S	2017-06-06	Nat Commun	Sequence variants in ARHGAP15, COLQ and FAM155A associate with diverticular disease and diverticulitis.	Diverticular disease	5,426 Icelandic ancestry cases, 245,951 Icelandic ancestry controls (includes non-array genotyped, whole-genome imputed individuals)	5,970 Danish ancestry cases, 3,020 Danish ancestry controls	7p13	HECW1	rs61756577-C	0.0064	1E-6		1.74	[1.40-2.18]	Illumina [32463443] (imputed)	N
917	chr7	43568565	43568566	rs55704525	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cerebrospinal fluid AB1-42 levels	up to 189 European and other ancestry early mild cognitive impairment cases,  up to 251 European and other ancestry late mild cognitive impairment cases,  up to 121 European and other ancestry Alzheimer's disease cases,  up to 215 European and other ancestry healthy controls	up to 3 European and other ancestry significant memory concern cases,  up to 57 European and other ancestry early mild cognitive impairment cases,   up to 61 European and other ancestry late mild cognitive impairment cases,  up to 62 European and other ancestry Alzheimer's disease cases,  up to 21 European and other ancestry healthy controls	7p13	HECW1	rs55704525-G	0.01	3E-7		0.3463	[NR] unit increase	Illumina [~ 9000000] (imputed)	N
917	chr7	43584520	43584521	rs10245574	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Caudal anterior-cingulate cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	7p13	HECW1	rs10245574-?		3E-6				Illumina [4322238] (imputed)	N
917	chr7	43622805	43622806	rs10251937	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	7p13		rs10251937-C	NR	4E-10		0.0128	[0.0089-0.0167] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
917	chr7	43622805	43622806	rs10251937	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	7p13	STK17A	rs10251937-C	0.388806	2E-18		0.02015318	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
917	chr7	43623122	43623123	rs2241738	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	7p13		rs2241738-?	NR	7E-12				NR [~ 8900000] (imputed)	N
917	chr7	43634474	43634474	rs199560986	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	7p13	NR	rs199560986-I	0.169506	4E-14		0.020153	[0.015-0.025] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
917	chr7	43634474	43634474	rs199560986	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	7p13	NR	rs199560986-I	0.169508	9E-12		0.018335	[0.013-0.024] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
917	chr7	43645432	43645433	rs7802995	29673008	Bonfiglio F	2018-04-19	Neurogastroenterol Motil	A GWAS meta-analysis from 5 population-based cohorts implicates ion channel genes in the pathogenesis of irritable bowel syndrome.	Irritable bowel syndrome	1,335 European ancestry cases, 9,768 European ancestry controls	NA	7p13	HECW1, LOC100506895	rs7802995-?	0.774	4E-6		1.3888888	[NR]	Illumina [2483385] (imputed)	N
918	chr7	43649990	43649991	rs6968645	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p13	NR	rs6968645-A	0.248709	3E-12				Affymetrix, Illumina [24246363] (imputed)	N
918	chr7	43654069	43654070	rs9639883	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	7p13	COA1, STK17A	rs9639883-G	0.188438	9E-15		0.02208543	[0.017-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
918	chr7	43654069	43654070	rs9639883	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p13	NR	rs9639883-G	0.217604	5E-12				Affymetrix, Illumina [20825802] (imputed)	N
918	chr7	43655884	43655885	rs56280746	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	7p13		rs56280746-?	NR	7E-8				NR [~ 8900000] (imputed)	N
918	chr7	43659763	43659764	rs4077435	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	7p13		rs4077435-C	0.25	2E-9		5.98	z score increase	Affymetrix [9061022] (imputed)	N
918	chr7	43670322	43670323	rs1057523	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	7p13	NR	rs1057523-?	NR	5E-9	(cerebellar vermal lobules I V)			NR [9227495] (imputed)	N
918	chr7	43676519	43676520	rs17439848	33109212	Chang H	2020-10-28	BMC Med	Genetic architecture of cardiometabolic risks in people living with HIV.	HDL cholesterol levels in HIV infection	3,095 European ancestry individuals, 3,189 African American individuals	NA	7p13	STK17A, COA1	rs17439848-?		5E-6	(African American)	0.28576183	[0.16-0.41] unit decrease	Illumina [13620258] (imputed)	N
918	chr7	43771430	43771431	rs148334351	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	7p13	NR	rs148334351-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
919	chr7	43783787	43783788	rs849177	33115937	Cho J	2020-10-28	Thorax	Genome-wide association study of non-tuberculous mycobacterial pulmonary disease.	Non-tuberculous mycobacterial pulmonary disease	403 Korean ancestry cases, 306 Korean ancestry controls	184 Korean ancestry cases, 1680 Korean ancestry controls	7p13	NR	rs849177-C	0.63	5E-8		1.29	[1.02-1.62] (replication cohort)	Illumina [4877242] (imputed)	N
919	chr7	43785018	43785019	rs849179	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	7p13	NR	rs849179-T	0.2379	1E-8				NR [9056863] (imputed)	N
919	chr7	43795676	43795677	rs1181602	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	7p13	BLVRA	rs1181602-G	0.763043	2E-10		0.0157427	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
919	chr7	43842116	43842117	rs3107888	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	7p13		rs3107888-A	NR	1E-11		0.0152	[0.011-0.02] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
919	chr7	43858632	43858633	rs13231479	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cataracts	39,519 European ancestry cases, 452,358 European ancestry controls, 38,194 East Asian ancestry cases, 140,532 East Asian ancestry controls	NA	7p13		rs13231479-C	NR	3E-8		0.0559	[0.036-0.076] unit increase	Affymetrix, Illumina [25845331] (imputed)	N
919	chr7	43859415	43859415	rs56379725	28490609	Wood AR	2017-05-10	Diabetes	A Genome-Wide Association Study of IVGTT-Based Measures of First-Phase Insulin Secretion Refines the Underlying Physiology of Type 2 Diabetes Variants.	Peak insulin response	2,337 Hispanic individuals, 2,159 European ancestry individuals, 332 Pima Indian ancestry individuals	739 European ancestry individuals	7p13	LOC102724946, BLVRA, URGCP-MRPS24	rs56379725-?	NR	4E-8	(BMI adjusted)	0.176	[0.11-0.24] pmol/l increase	Affymetrix, Illumina [~ 39000000] (imputed)	N
919	chr7	43866239	43866240	rs75485115	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure	35,269 European ancestry cases, 63,451 European ancestry controls	NA	7p13	NR	rs75485115-T	0.131781	6E-6		1.064	[1.04-1.09]	Affymetrix [7791636] (imputed)	N
920	chr7	43910881	43910882	rs10232743	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	7p13	MRPS24	rs10232743-A	0.016	7E-6	(VO2max )	0.04	[NR] mL/min increase	Illumina [899892]	N
920	chr7	43932982	43932983	rs576416681	28490609	Wood AR	2017-05-10	Diabetes	A Genome-Wide Association Study of IVGTT-Based Measures of First-Phase Insulin Secretion Refines the Underlying Physiology of Type 2 Diabetes Variants.	Peak insulin response	2,337 Hispanic individuals, 2,159 European ancestry individuals, 332 Pima Indian ancestry individuals	739 European ancestry individuals	7p13	URGCP, MRPS24, URGCP-MRPS24	rs576416681-?	NR	4E-8	(BMI adjusted)	0.172	[0.11-0.23] pmol/l increase	Affymetrix, Illumina [~ 39000000] (imputed)	N
920	chr7	43933633	43933634	rs188483654	34506852	Chang X	2021-09-07	J Allergy Clin Immunol	A genome-wide association meta-analysis identifies new Eosinophilic esophagitis loci.	Eosinophilic esophagitis	1,288 European ancestry male cases, 6,548 European ancestry male controls	NA	7p13	URGCP	rs188483654-C	0.0019	9E-9		5.68	[3.14-10.25]	Illumina [11310926] (imputed)	N
920	chr7	43976547	43976548	rs2528374	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	7p13	NR	rs2528374-G	NR	2E-18		0.0487	[0.038-0.06] unit increase	Affymetrix [9000000] (imputed)	N
920	chr7	43980539	43980540	rs2595644	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	7p13		rs2595644-?	NR	5E-9		0.0122625	[0.0082-0.0164] unit decrease	NR [6912294] (imputed)	N
920	chr7	44005217	44005221	rs373219922	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	7p13	AC004985.12, POLR2J4, RP5-1165K10.2	rs373219922-A	0.62786	8E-11		0.016208703	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
921	chr7	44136645	44136646	rs578115096	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	7p13	NR	rs578115096-G	1.0	2E-6		1.03	[-1.028-3.088]	Affymetrix [at least 143006] (imputed)	N
921	chr7	44145177	44145178	rs55841377	30833571	Wiberg A	2019-03-04	Nat Commun	A genome-wide association analysis identifies 16 novel susceptibility loci for carpal tunnel syndrome.	Carpal tunnel syndrome	12,312 European ancestry cases, 389,344 European ancestry controls	NA	7p13	AEBP1	rs55841377-C	0.773	8E-9		1.09	[1.06-1.13]	Affymetrix [84000000] (imputed)	N
921	chr7	44153779	44153780	rs13928	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	7p13	NR	rs13928-G	NR	3E-15		0.0193	[0.015-0.024] unit increase	Affymetrix [9000000] (imputed)	N
921	chr7	44156145	44156146	rs3087367	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	7p13	DBNL	rs3087367-G	0.55640625	2E-18	(DBNL, 9755_19_3)	0.21311711	[0.17-0.26] unit increase	Illumina [> 1000000] (imputed)	N
921	chr7	44157977	44157978	rs3217962	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DBNL	5,336 Icelandic ancestry individuals	NA	7p13		rs3217962-G	0.4454	6E-28		0.183172	[0.15-0.22] unit decrease	Illumina [7506463] (imputed)	N
921	chr7	44158278	44158278	rs550260995	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glucose levels	114,870 European ancestry individuals	NA	7p13		rs550260995-A	0.823179	3E-8		0.0309103	[0.02-0.042] unit decrease	NR [11722792] (imputed)	N
922	chr7	44174856	44174857	rs2908279	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	46,511 Asian ancestry cases, 169,776 Asian ancestry controls	NA	7p13	NR	rs2908279-G	0.5983	1E-11		0.0628	[0.045-0.081] unit increase	Affymetrix, Illumina [1077427] (imputed)	N
922	chr7	44174856	44174857	rs2908279	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	7p13		rs2908279-G	0.596113968	1E-10		1.0560962	[1.038766738-1.073714807]	Illumina [8919992] (imputed)	N
922	chr7	44174856	44174857	rs2908279	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	7p13	MYL7, GCK	rs2908279-G	0.627	8E-11		1.05	[1.03-1.06]	Affymetrix, Illumina [11800000] (imputed)	N
922	chr7	44174856	44174857	rs2908279	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	7p13	MYL7, GCK	rs2908279-T	0.494558	4E-7		0.016001	[0.0098-0.0222] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
922	chr7	44174856	44174857	rs2908279	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	7p13	GCK	rs2908279-G	0.6	5E-12		1.07	1.05-1.09	Illumina [12557761] (imputed)	N
922	chr7	44178625	44178626	rs1008384	33842983	Chung RH	2021-04-12	Diabetologia	Multi-omics analysis identifies CpGs near G6PC2 mediating the effects of genetic variants on fasting glucose.	Fasting blood glucose	18,122 Han Chinese ancestry individuals	1,989 Han Chinese ancestry individuals	7p13	MYL7	rs1008384-G	0.24	3E-9		0.076	[0.051-0.101] unit decrease	Affymetrix [774398] (imputed)	N
922	chr7	44179222	44179223	rs6953355	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	7p13	GCK	rs6953355-?	NR	2E-6	(proline)	0.40446785	[0.24-0.57] unit decrease	Affymetrix [at least 2500000] (imputed)	N
922	chr7	44183186	44183187	rs2971681	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	7p13	NR	rs2971681-G	NR	1E-26		0.0348	[0.028-0.041] unit increase	Affymetrix [9000000] (imputed)	N
922	chr7	44183186	44183187	rs2971681	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	7p13	NR	rs2971681-G	NR	6E-30		0.0378	[0.031-0.044] unit increase	Affymetrix [9000000] (imputed)	N
922	chr7	44184768	44184769	rs753795627	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Hemoglobin A1c levels	437,749 European ancestry individuals	NA	7p13		rs753795627-?	NR	3E-24		1.1952	[0.96-1.44] unit increase	NR [9800000] (imputed)	N
922	chr7	44184768	44184769	rs753795627	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Blood glucose levels	400,458 European ancestry individuals	NA	7p13		rs753795627-?	NR	3E-17		1.18829	[0.92-1.46] unit increase	NR [9800000] (imputed)	N
922	chr7	44185087	44185088	rs2908274	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	24,646 African American cases, 31,446 African American controls	NA	7p13	NR	rs2908274-G	0.359	5E-11		0.089	[0.062-0.116] unit decrease	Affymetrix, Illumina [945603] (imputed)	N
922	chr7	44188219	44188220	rs2010825	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	7p13		rs2010825-C	NR	9E-11		0.0411	[0.029-0.053] unit increase	Affymetrix, Illumina [25845091] (imputed)	N
922	chr7	44189273	44189274	rs2268575	31021400	Masotti M	2019-04-25	Biometrics	Pleiotropy informed adaptive association test of multiple traits using GWAS summary data.	Glycemic traits (pleiotropy)	46,186 European ancestry individuals	NA	7p13	GCK	rs2268575-?	NR	4E-11				NR [NR]	N
922	chr7	44192259	44192260	rs2971677	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	7p13	NR	rs2971677-A	NR	1E-12		0.0233	[0.017-0.03] unit increase	Affymetrix [9000000] (imputed)	N
922	chr7	44192904	44192905	rs373418736	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Hemoglobin A1c levels	437,749 European ancestry individuals	NA	7p13		rs373418736-?	NR	2E-8		0.764406	[0.51-1.02] unit increase	NR [9800000] (imputed)	N
922	chr7	44193461	44193462	rs2908296	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	7p13	NR	rs2908296-T	0.25	3E-7	(Japanese, Male)	0.027	[0.017-0.037] unit decrease	Illumina [6108953] (imputed)	N
922	chr7	44197582	44197583	rs2070971	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	7p13		rs2070971-G	0.862956	3E-8		0.0313826	[0.02-0.042] unit decrease	NR [11722792] (imputed)	N
922	chr7	44197582	44197583	rs2070971	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very small VLDL	115,082 European ancestry individuals	NA	7p13		rs2070971-G	0.862947	2E-8		0.0330732	[0.022-0.045] unit decrease	NR [11722792] (imputed)	N
922	chr7	44197582	44197583	rs2070971	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small VLDL	115,082 European ancestry individuals	NA	7p13		rs2070971-G	0.862947	4E-8		0.0318448	[0.02-0.043] unit decrease	NR [11722792] (imputed)	N
922	chr7	44197582	44197583	rs2070971	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small LDL	115,082 European ancestry individuals	NA	7p13		rs2070971-G	0.862947	5E-8		0.0319257	[0.02-0.043] unit decrease	NR [11722792] (imputed)	N
922	chr7	44197582	44197583	rs2070971	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small HDL	115,082 European ancestry individuals	NA	7p13		rs2070971-G	0.862947	2E-9		0.0349399	[0.024-0.046] unit decrease	NR [11722792] (imputed)	N
922	chr7	44197582	44197583	rs2070971	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium LDL	115,082 European ancestry individuals	NA	7p13		rs2070971-G	0.862947	2E-8		0.0329031	[0.021-0.044] unit decrease	NR [11722792] (imputed)	N
922	chr7	44197582	44197583	rs2070971	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in LDL	115,082 European ancestry individuals	NA	7p13		rs2070971-G	0.862947	4E-8		0.0322444	[0.021-0.044] unit decrease	NR [11722792] (imputed)	N
922	chr7	44197582	44197583	rs2070971	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total triglycerides levels	115,082 European ancestry individuals	NA	7p13		rs2070971-G	0.862947	4E-8		0.0319611	[0.021-0.043] unit decrease	NR [11722792] (imputed)	N
922	chr7	44197582	44197583	rs2070971	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	7p13		rs2070971-G	0.862883	5E-8		0.031468	[0.02-0.043] unit increase	NR [11722792] (imputed)	N
922	chr7	44197582	44197583	rs2070971	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Monounsaturated fatty acid levels	115,006 European ancestry individuals	NA	7p13		rs2070971-G	0.862883	5E-8		0.0323992	[0.021-0.044] unit decrease	NR [11722792] (imputed)	N
922	chr7	44197582	44197583	rs2070971	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	7p13		rs2070971-T	NR	3E-13		0.0196	[0.014-0.025] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
922	chr7	44197582	44197583	rs2070971	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	7p13	GCK	rs2070971-?	NR	5E-13		0.0275	[0.021-0.034] unit increase	Affymetrix [5701386] (imputed)	N
922	chr7	44197582	44197583	rs2070971	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7p13		rs2070971-?	NR	5E-10				NR [~ 8900000] (imputed)	N
922	chr7	44199141	44199142	rs1799831	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	7p13	GCK	rs1799831-C	0.843967	3E-19		0.0245722	[0.019-0.03] unit decrease	Affymetrix [NR] (imputed)	N
922	chr7	44199141	44199142	rs1799831	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	7p13	NR	rs1799831-C	0.843649	2E-13		0.00871769	[0.0065-0.011] unit increase	Affymetrix [16582909] (imputed)	N
922	chr7	44199141	44199142	rs1799831	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	7p13	NR	rs1799831-C	0.843337	5E-9		0.00955507	[0.0064-0.0127] unit increase	Affymetrix [16582621] (imputed)	N
922	chr7	44199141	44199142	rs1799831	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	7p13	NR	rs1799831-C	0.843649	1E-8		0.00752687	[0.005-0.01] unit increase	Affymetrix [16582965] (imputed)	N
922	chr7	44199141	44199142	rs1799831	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	7p13	NR	rs1799831-C	0.843337	3E-7		0.00877512	[0.0055-0.0121] unit increase	Affymetrix [16582614] (imputed)	N
922	chr7	44205905	44205906	rs2971672	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	7p13	GCK	rs2971672-A	0.5854	3E-10		0.0178	[0.012-0.023] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
922	chr7	44205905	44205906	rs2971672	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Blood sugar levels	93,146 Japanese ancestry individuals	NA	7p13	NR	rs2971672-?	NR	8E-7		0.02296	[0.014-0.032] unit increase novel	Illumina [6108953] (imputed)	N
922	chr7	44211406	44211407	rs16881016	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	7p13	NR	rs16881016-C	NR	7E-24		0.0371	[0.03-0.044] unit decrease	Affymetrix [9000000] (imputed)	N
922	chr7	44214294	44214297	rs148602629	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	7p13		rs148602629-T	NR	5E-8		0.0127	[0.0082-0.0172] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
922	chr7	44216136	44216137	rs2908290	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Fasting blood glucose	6,457 African American individuals, 13,556 Hispanic/Latino individuals, 1,918 Asian ancestry individuals, 1,400 Native Hawaiian ancestry individuals, 412 Native American ancestry individuals, 168 individuals	NA	7p13	NR	rs2908290-?	NR	3E-12		0.06388349	[0.046-0.082] unit increase	Illumina [29713514] (imputed)	N
922	chr7	44216136	44216137	rs2908290	30525989	Siewert KM	2018-12-01	Circ Genom Precis Med	Bivariate Genome-Wide Association Scan Identifies 6 Novel Loci Associated With Lipid Levels and Coronary Artery Disease.	Coronary artery disease and triglyceride levels (multivariate analysis)	122,733 coronary artery disease cases, 424,528 coronary artery disease controls, 188,577 individuals	NA	7p13	GCK	rs2908290-A	0.38	2E-8				NR [NR]	N
922	chr7	44219704	44219705	rs10259649	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Fasting blood glucose	6,457 African American individuals, 13,556 Hispanic/Latino individuals, 1,918 Asian ancestry individuals, 1,400 Native Hawaiian ancestry individuals, 412 Native American ancestry individuals, 168 individuals	NA	7p13	NR	rs10259649-?	NR	2E-15		0.09194953	[0.069-0.115] unit increase	Illumina [29713514] (imputed)	N
922	chr7	44220918	44220919	rs11766576	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	7p13	NR	rs11766576-A	NR	8E-11		0.0434	[0.03-0.057] unit decrease	Affymetrix [9000000] (imputed)	N
922	chr7	44222997	44222998	rs79582698	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	7p13	NR	rs79582698-A	NR	1E-14		0.0357	[0.027-0.045] unit decrease	Affymetrix [9000000] (imputed)	N
922	chr7	44222997	44222998	rs79582698	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	7p13	NR	rs79582698-A	NR	2E-10		0.0301	[0.021-0.039] unit decrease	Affymetrix [9000000] (imputed)	N
922	chr7	44223720	44223721	rs730497	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glucose levels	114,870 European ancestry individuals	NA	7p13		rs730497-G	0.821973	7E-40		0.0707188	[0.06-0.081] unit decrease	NR [11722792] (imputed)	N
922	chr7	44223720	44223721	rs730497	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	71,221 East Asian ancestry individuals	NA	7p13		rs730497-A	0.176951	8E-9		0.0316929	[0.021-0.042] unit increase	Illumina [13466143] (imputed)	N
922	chr7	44223720	44223721	rs730497	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	7p13	NR	rs730497-A	NR	2E-273		0.1124	[0.11-0.12] unit increase	Affymetrix [9000000] (imputed)	N
922	chr7	44223720	44223721	rs730497	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	7p13	NR	rs730497-A	NR	4E-261		0.1121	[0.11-0.12] unit increase	Affymetrix [9000000] (imputed)	N
922	chr7	44223720	44223721	rs730497	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	7p13	NR	rs730497-G	0.8275	9E-29		0.0552	[0.045-0.065] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
922	chr7	44223720	44223721	rs730497	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Hemoglobin A1c levels	559 African American individuals, 10,408 Hispanic/Latino individuals, 92 Asian ancestry individuals, 4 Native American ancestry individuals, 115 individuals	NA	7p13	NR	rs730497-?	NR	2E-11		0.1112566	[0.079-0.144] unit increase	Illumina [22871999] (imputed)	N
922	chr7	44223720	44223721	rs730497	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Fasting blood glucose	6,457 African American individuals, 13,556 Hispanic/Latino individuals, 1,918 Asian ancestry individuals, 1,400 Native Hawaiian ancestry individuals, 412 Native American ancestry individuals, 168 individuals	NA	7p13	NR	rs730497-?	NR	1E-23		0.1118553	[0.09-0.134] unit increase	Illumina [29713514] (imputed)	N
922	chr7	44223720	44223721	rs730497	25187374	Hwang JY	2014-09-03	Diabetes	Genome-wide association meta-analysis identifies novel variants associated with fasting plasma glucose in East Asians.	Fasting plasma glucose	24,740 East Asian ancestry individuals	21,345 East Asian ancestry individuals	7p13	GCK	rs730497-?	NR	8E-27		0.121	[0.099-0.143] unit increase	Affymetrix, Illumina [up to 2315813] (imputed)	N
922	chr7	44223720	44223721	rs730497	19096518	Pare G	2008-12-19	PLoS Genet	Novel association of HK1 with glycated hemoglobin in a non-diabetic population: a genome-wide evaluation of 14,618 participants in the Women's Genome Health Study.	Glycated hemoglobin levels	14,618 European ancestry females	455 European ancestry individuals	7p13	GCK	rs730497-A	0.17	6E-12		0.03	[NR] % increase	Illumina [337343]	N
922	chr7	44223857	44223858	rs78412508	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	7p13	NR	rs78412508-A	NR	2E-9		0.0783	[0.053-0.104] unit increase	Affymetrix [9000000] (imputed)	N
922	chr7	44226100	44226101	rs2971670	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting glucose	4,734 individuals	NA	7p13		rs2971670-T	0.179481387	2E-8		0.151915	[0.099-0.205] mmol/l increase	Illumina [7701709] (imputed)	N
922	chr7	44226100	44226101	rs2971670	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	7p13	GCK	rs2971670-T	0.1693	5E-88		0.0316	[0.028-0.035] unit increase	Affymetrix, Illumina [33811881] (imputed)	N
922	chr7	44226100	44226101	rs2971670	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	9,343 South Asian ancestry individuals	NA	7p13	GCK	rs2971670-T	0.1206	7E-7		0.0746	[0.04-0.109] unit increase	Illumina, Perlegen [20274841] (imputed)	N
922	chr7	44226100	44226101	rs2971670	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	35,619 East Asian ancestry individuals	NA	7p13	GCK	rs2971670-T	0.198	4E-31		0.0574	[0.047-0.067] unit increase	Affymetrix, Illumina [15438438] (imputed)	N
922	chr7	44226100	44226101	rs2971670	31213470	Moon JY	2019-06-18	Diabetes Care	A Genome-Wide Association Study Identifies Blood Disorder-Related Variants Influencing Hemoglobin A1c With Implications for Glycemic Status in U.S. Hispanics/Latinos.	Glycated hemoglobin levels	9,636 Hispanic/Latino individuals	4,777 Hispanic/Latino individuals	7p13	GCK	rs2971670-T	0.202	3E-11		0.04	[0.02-0.06] % increase	Illumina [11510031] (imputed)	N
922	chr7	44229067	44229068	rs1799884	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	133,336 East Asian ancestry individuals	NA	7p13		rs1799884-T	0.175809	3E-19		0.0402869	[0.031-0.049] unit increase	Illumina [13476509] (imputed)	N
922	chr7	44229067	44229068	rs1799884	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	9,525 South Asian ancestry individuals	NA	7p13	GCK	rs1799884-T	0.1205	2E-6		0.0561	[0.032-0.08] unit increase	Illumina, Perlegen [19922415] (imputed)	N
922	chr7	44229067	44229068	rs1799884	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	33,307 East Asian ancestry individuals	NA	7p13	GCK	rs1799884-T	0.1941	2E-23		0.0333	[0.027-0.04] unit increase	Affymetrix, Illumina [15728197] (imputed)	N
922	chr7	44229067	44229068	rs1799884	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	15,248 Hispanic individuals	NA	7p13	GCK	rs1799884-T	0.2029	2E-13		0.0388	[0.028-0.049] unit increase	Affymetrix, Illumina [29199641] (imputed)	N
922	chr7	44229067	44229068	rs1799884	33842983	Chung RH	2021-04-12	Diabetologia	Multi-omics analysis identifies CpGs near G6PC2 mediating the effects of genetic variants on fasting glucose.	Fasting blood glucose	18,122 Han Chinese ancestry individuals	1,989 Han Chinese ancestry individuals	7p13	GCK	rs1799884-T	0.19	8E-27		0.136	[0.11-0.16] unit increase	Affymetrix [774398] (imputed)	N
922	chr7	44229067	44229068	rs1799884	31902109	Li D	2020-01-04	Genes Genomics	Progressive effects of single-nucleotide polymorphisms on 16 phenotypic traits based on longitudinal data.	Hematological and biochemical traits	up to 6,843 Korean ancestry individuals	NA	7p13	GCK	rs1799884-A	0.1872	6E-9	(fasting blood glucose)	0.01889	NR unit increase	Affymetrix [305158]	N
922	chr7	44229067	44229068	rs1799884	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Hemoglobin A1c levels	559 African American individuals, 10,408 Hispanic/Latino individuals, 92 Asian ancestry individuals, 4 Native American ancestry individuals, 115 individuals	NA	7p13	NR	rs1799884-?	NR	5E-12		0.1147225	[0.082-0.147] unit increase	Illumina [22871999] (imputed)	N
922	chr7	44229067	44229068	rs1799884	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Fasting blood glucose	6,457 African American individuals, 13,556 Hispanic/Latino individuals, 1,918 Asian ancestry individuals, 1,400 Native Hawaiian ancestry individuals, 412 Native American ancestry individuals, 168 individuals	NA	7p13	NR	rs1799884-?	NR	2E-25		0.1171671	[0.095-0.139] unit increase	Illumina [29713514] (imputed)	N
922	chr7	44229067	44229068	rs1799884	24647736	Chen P	2014-03-19	Diabetes	Multiple nonglycemic genomic loci are newly associated with blood level of glycated hemoglobin in East Asians.	Glycated hemoglobin levels	17,290 East Asian ancestry individuals, 1,727 Malay ancestry individuals	up to 13,585 East Asian ancestry individuals	7p13	GCK	rs1799884-T	0.19	2E-22		0.12	[0.10-0.14] unit increase	Affymetrix, Illumina [up to 2400000] (imputed)	N
922	chr7	44229067	44229068	rs1799884	24244560	Chen P	2013-11-07	PLoS One	A study assessing the association of glycated hemoglobin A1C (HbA1C) associated variants with HbA1C, chronic kidney disease and diabetic retinopathy in populations of Asian ancestry.	Glycated hemoglobin levels	3,427 Chinese ancestry individuals, 1,735 Malay ancestry individuals, 1,520 Asian Indian ancestry individuals	NA	7p13	GCK	rs1799884-T	0.17	6E-8	(HbA1c)	0.44	[0.42-0.46] unit increase	Illumina [up to 2400000] (imputed)	N
922	chr7	44229067	44229068	rs1799884	23575436	Go MJ	2013-04-11	J Hum Genet	New susceptibility loci in MYL2, C12orf51 and OAS1 associated with 1-h plasma glucose as predisposing risk factors for type 2 diabetes in the Korean population.	Glycemic traits	7,696 Korean ancestry individuals	6,536 Korean ancestry individuals	7p13	GCK	rs1799884-A		5E-18	(FPG)	0.063	[0.049-0.077] mmol-1 increase	Affymetrix [357789]	N
922	chr7	44229067	44229068	rs1799884	23575436	Go MJ	2013-04-11	J Hum Genet	New susceptibility loci in MYL2, C12orf51 and OAS1 associated with 1-h plasma glucose as predisposing risk factors for type 2 diabetes in the Korean population.	Glycemic traits	7,696 Korean ancestry individuals	6,536 Korean ancestry individuals	7p13	GCK	rs1799884-A		3E-9	(1-hPG)	0.208	[0.14-0.28] mmol-1 increase	Affymetrix [357789]	N
922	chr7	44229067	44229068	rs1799884	23575436	Go MJ	2013-04-11	J Hum Genet	New susceptibility loci in MYL2, C12orf51 and OAS1 associated with 1-h plasma glucose as predisposing risk factors for type 2 diabetes in the Korean population.	Glycemic traits	7,696 Korean ancestry individuals	6,536 Korean ancestry individuals	7p13	GCK	rs1799884-A		3E-10	(2-hPG)	0.162	[0.11-0.21] mmol-1 increase	Affymetrix [357789]	N
922	chr7	44229067	44229068	rs1799884	21909109	Kim YJ	2011-09-11	Nat Genet	Large-scale genome-wide association studies in East Asians identify new genetic loci influencing metabolic traits.	Metabolite levels	12,545 Korean ancestry individuals	Up to 30,395 East Asian ancestry individuals	7p13	GCK	rs1799884-A	0.19	2E-19	(FPG)	0.0619	[0.049-0.075] mg/dL increase	Affymetrix [~ 2200000] (imputed)	N
922	chr7	44229067	44229068	rs1799884	20858683	Soranzo N	2010-09-21	Diabetes	Common variants at 10 genomic loci influence hemoglobin A?(C) levels via glycemic and nonglycemic pathways.	Glycated hemoglobin levels	up to 46,368 European ancestry individuals	NA	7p13	GCK	rs1799884-T	0.18	1E-20		0.04	[0.03-0.05] % increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
922	chr7	44230380	44230381	rs74897641	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	7p13	NR	rs74897641-A	NR	1E-25		0.1034	[0.084-0.123] unit increase	Affymetrix [9000000] (imputed)	N
922	chr7	44230380	44230381	rs74897641	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	7p13	NR	rs74897641-A	NR	3E-25		0.105	[0.085-0.125] unit increase	Affymetrix [9000000] (imputed)	N
922	chr7	44231215	44231216	rs3757840	34753797	Riveros-Mckay F	2021-11-09	Diabetes	An Expanded Genome-Wide Association Study of Fructosamine Levels Identifies RCN3 as a Replicating Locus and Implicates FCGRT as the Effector Transcript.	Fructosamine levels	20,731 European ancestry individuals	7,647 European ancestry individuals	7p13	GCK	rs3757840-T	0.49	4E-8		0.0062	[0.004-0.0084] unit increase	Affymetrix [19100024] (imputed)	N
922	chr7	44231215	44231216	rs3757840	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	7p13		rs3757840-?	NR	2E-9				NR [~ 8900000] (imputed)	N
922	chr7	44231215	44231216	rs3757840	22399527	Kristiansson K	2012-03-07	Circ Cardiovasc Genet	Genome-wide screen for metabolic syndrome susceptibility Loci reveals strong lipid gene contribution but no evidence for common genetic basis for clustering of metabolic syndrome traits.	Metabolic syndrome	2,637 European ancestry cases, 7,927 European ancestry controls	NA	7p13	GCK	rs3757840-A	0.46	4E-13	(GLU)	0.1	[NR] mmol/l increase	Illumina [1257079] (imputed)	N
922	chr7	44231777	44231778	rs2971669	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Two-hour glucose	8,509 East Asian ancestry individuals	NA	7p13	GCK	rs2971669-T	0.3694	2E-7		0.1703	[0.095-0.246] unit increase	Affymetrix [9187953] (imputed)	N
922	chr7	44231777	44231778	rs2971669	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Two-hour glucose	12,578 Hispanic individuals	NA	7p13	GCK	rs2971669-T	0.2669	2E-10		0.1407	[0.095-0.186] unit increase	Illumina [24662309] (imputed)	N
922	chr7	44231777	44231778	rs2971669	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	Triglyceride levels	291,107 British ancestry individuals	NA	7p13	GCK	rs2971669-T	0.216938	1E-7		0.0134101	[0.0084-0.0184] unit increase	Affymetrix [9463307] (imputed)	N
922	chr7	44231777	44231778	rs2971669	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	Blood glucose levels	291,107 British ancestry individuals	NA	7p13	GCK	rs2971669-T	0.216938	1E-25		0.0144752	[0.013-0.016] unit increase	Affymetrix [9463307] (imputed)	N
922	chr7	44231777	44231778	rs2971669	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	7p13	GCK	rs2971669-T	0.218715	8E-14		0.027606	[0.02-0.035] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
922	chr7	44231777	44231778	rs2971669	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	7p13	GCK	rs2971669-T	0.2754	5E-14		0.2183	[0.16-0.28] mmHg increase	Affymetrix [NR] (imputed)	N
922	chr7	44231777	44231778	rs2971669	29309628	Beaumont RN	2018-01-03	Hum Mol Genet	Genome-wide association study of offspring birth weight in 86 577 women identifies five novel loci and highlights maternal genetic effects that are independent of fetal genetics.	Offspring birth weight	68,258 European ancestry women	18,319 European ancestry women	7p13	GCK	rs2971669-T	0.23	7E-9		0.035	[0.023-0.047] z-score increase	Affymetrix, Illumina, Perlegen [up to 8741107] (imputed)	N
922	chr7	44231777	44231778	rs2971669	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	7p13	GCK, YKT6	rs2971669-C		3E-8		0.169	unit decrease	Affymetrix [at least 2696785] (imputed)	N
922	chr7	44231885	44231886	rs6975024	34951656	Downie CG	2021-12-24	Diabetologia	Multi-ethnic GWAS and fine-mapping of glycaemic traits identify novel loci in the PAGE Study.	Glycated haemoglobin HbA1c levels adjusted for BMI	9,228 European ancestry individuals	NA	7p13		rs6975024-T	0.16979999999999995	3E-9		0.1237	[0.083-0.164] unit decrease	Affymetrix, Illumina [23060038] (imputed)	N
922	chr7	44231885	44231886	rs6975024	34951656	Downie CG	2021-12-24	Diabetologia	Multi-ethnic GWAS and fine-mapping of glycaemic traits identify novel loci in the PAGE Study.	Glycated haemoglobin HbA1c levels adjusted for BMI	23,357 European ancestry, African American or Afro-Caribbean, Hispanic or Latin American, Asian ancestry individuals	NA	7p13		rs6975024-T	0.17010000000000003	3E-19		0.1175	[0.092-0.143] unit decrease	Affymetrix, Illumina [23060038] (imputed)	N
922	chr7	44231885	44231886	rs6975024	34951656	Downie CG	2021-12-24	Diabetologia	Multi-ethnic GWAS and fine-mapping of glycaemic traits identify novel loci in the PAGE Study.	Glycated haemoglobin HbA1c levels adjusted for BMI	10,693 Hispanic or Latin American individuals	NA	7p13		rs6975024-T	0.18530000000000002	8E-10		0.1109	[0.076-0.146] unit decrease	Affymetrix, Illumina [23060038] (imputed)	N
922	chr7	44231885	44231886	rs6975024	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Hemoglobin A1c levels	42,790 Japanese ancestry individuals	NA	7p13	GCK, YKT6	rs6975024-?	NR	4E-11		0.05908	[0.042-0.077] unit increase novel	Illumina [6108953] (imputed)	N
922	chr7	44231885	44231886	rs6975024	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Blood sugar levels	93,146 Japanese ancestry individuals	NA	7p13	GCK, YKT6	rs6975024-?	NR	7E-16		0.04897	[0.037-0.061] unit increase novel	Illumina [6108953] (imputed)	N
922	chr7	44232612	44232613	rs58053084	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	7p13	NR	rs58053084-G	NR	8E-11		0.0301	[0.021-0.039] unit decrease	Affymetrix [9000000] (imputed)	N
922	chr7	44232612	44232613	rs58053084	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	7p13	NR	rs58053084-G	NR	4E-10		0.029	[0.02-0.038] unit decrease	Affymetrix [9000000] (imputed)	N
922	chr7	44232612	44232613	rs58053084	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	7p13	NR	rs58053084-G	NR	1E-19		0.0429	[0.034-0.052] unit decrease	Affymetrix [9000000] (imputed)	N
922	chr7	44232612	44232613	rs58053084	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	7p13	NR	rs58053084-G	NR	2E-34		0.0591	[0.05-0.069] unit decrease	Affymetrix [9000000] (imputed)	N
922	chr7	44234736	44234737	rs2908286	34951656	Downie CG	2021-12-24	Diabetologia	Multi-ethnic GWAS and fine-mapping of glycaemic traits identify novel loci in the PAGE Study.	Fasting glucose adjusted for BMI	52,211 European ancestry, African American or Afro-Caribbean, Hispanic or Latin American, Asian ancestry, Other ancestry, Native American ancestry individuals	NA	7p13		rs2908286-T	0.1859	3E-45		0.1162	[0.1-0.13] unit increase	Affymetrix, Illumina [29259056] (imputed)	N
922	chr7	44234736	44234737	rs2908286	34951656	Downie CG	2021-12-24	Diabetologia	Multi-ethnic GWAS and fine-mapping of glycaemic traits identify novel loci in the PAGE Study.	Fasting glucose adjusted for BMI	19,745 European ancestry individuals	NA	7p13		rs2908286-T	0.1713	8E-20		0.1256	[0.099-0.153] unit increase	Affymetrix, Illumina [29259056] (imputed)	N
922	chr7	44234736	44234737	rs2908286	34951656	Downie CG	2021-12-24	Diabetologia	Multi-ethnic GWAS and fine-mapping of glycaemic traits identify novel loci in the PAGE Study.	Fasting glucose adjusted for BMI	16,018 Hispanic or Latin American individuals	NA	7p13		rs2908286-T	0.2028	3E-22		0.126	[0.1-0.15] unit increase	Affymetrix, Illumina [29259056] (imputed)	N
922	chr7	44234736	44234737	rs2908286	34951656	Downie CG	2021-12-24	Diabetologia	Multi-ethnic GWAS and fine-mapping of glycaemic traits identify novel loci in the PAGE Study.	Fasting glucose adjusted for BMI	12,195 African American or Afro-Caribbean individuals	NA	7p13		rs2908286-T	0.1765	4E-10		0.1127	[0.077-0.148] unit increase	Affymetrix, Illumina [29259056] (imputed)	N
922	chr7	44234736	44234737	rs2908286	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	19,247 Hispanic individuals	NA	7p13	GCK	rs2908286-T	0.204	1E-26		0.0662	[0.054-0.079] unit increase	Affymetrix, Illumina [28177426] (imputed)	N
922	chr7	44234736	44234737	rs2908286	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	16,579 African American individuals	NA	7p13	GCK	rs2908286-T	0.1766	3E-14		0.0626	[0.046-0.08] unit increase	Affymetrix, Illumina [27843817] (imputed)	N
922	chr7	44234736	44234737	rs2908286	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	7p13	NR	rs2908286-C	0.8287	3E-29		0.0683	[0.056-0.08] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
922	chr7	44234793	44234794	rs117316370	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	7p13	NR	rs117316370-T	NR	2E-13		0.0708	[0.052-0.09] unit increase	Affymetrix [9000000] (imputed)	N
922	chr7	44234793	44234794	rs117316370	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	7p13	NR	rs117316370-T	NR	5E-10		0.0613	[0.042-0.081] unit increase	Affymetrix [9000000] (imputed)	N
922	chr7	44235667	44235668	rs4607517	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting glucose	73,089 European ancestry women	NA	7p13	GCK	rs4607517-G	0.838785	3E-46		0.057621	[0.05-0.066] unit decrease	Affymetrix, Illumina [8700000] (imputed)	N
922	chr7	44235667	44235668	rs4607517	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting glucose	67,506 European ancestry men	NA	7p13	GCK	rs4607517-G	0.838785	7E-44		0.059183	[0.051-0.068] unit decrease	Affymetrix, Illumina [8700000] (imputed)	N
922	chr7	44235667	44235668	rs4607517	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting glucose	151,188 European ancestry individuals	NA	7p13	GCK	rs4607517-G	0.838785	4E-97		0.059017	[0.053-0.065] unit decrease	Affymetrix, Illumina [8700000] (imputed)	N
922	chr7	44235667	44235668	rs4607517	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	7p13	YKT6	rs4607517-?	NR	3E-8	(Glc)	0.053159006	NR unit increase	Illumina [609262]	N
922	chr7	44235667	44235668	rs4607517	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	7p13	YKT6	rs4607517-?	NR	7E-10	(Glc)	0.07700389	NR unit increase	Illumina [609262]	N
922	chr7	44235667	44235668	rs4607517	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Fasting blood glucose	6,457 African American individuals, 13,556 Hispanic/Latino individuals, 1,918 Asian ancestry individuals, 1,400 Native Hawaiian ancestry individuals, 412 Native American ancestry individuals, 168 individuals	NA	7p13	NR	rs4607517-?	NR	2E-21		0.1141766	[0.091-0.138] unit increase	Illumina [29713514] (imputed)	N
922	chr7	44235667	44235668	rs4607517	30369944	Balakrishnan P	2018-10-12	Front Genet	Genetic Variants Related to Cardiometabolic Traits Are Associated to B Cell Function, Insulin Resistance, and Diabetes Among AmeriCan Indians: The Strong Heart Family Study.	HOMA-B (corrected for HOMA-IR)	1,892 American Indian ancestry individuals	NA	7p13	GCK, YKT6	rs4607517-?	0.26	3E-7		19.54	unit decrease	Illumina [120975] (imputed)	N
922	chr7	44235667	44235668	rs4607517	28898252	Wheeler E	2017-09-12	PLoS Med	Impact of common genetic determinants of Hemoglobin A1c on type 2 diabetes risk and diagnosis in ancestrally diverse populations: A transethnic genome-wide meta-analysis.	Glycated hemoglobin levels	88,355 European ancestry individuals	NA	7p13	GCK	rs4607517-A	0.2017	9E-38		0.0306	[0.026-0.035] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
922	chr7	44235667	44235668	rs4607517	28898252	Wheeler E	2017-09-12	PLoS Med	Impact of common genetic determinants of Hemoglobin A1c on type 2 diabetes risk and diagnosis in ancestrally diverse populations: A transethnic genome-wide meta-analysis.	Glycated hemoglobin levels	18,472 East Asian ancestry individuals	NA	7p13	GCK	rs4607517-A	0.2492	9E-15		0.0377	[0.028-0.047] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
922	chr7	44235667	44235668	rs4607517	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	7p13	intergenic	rs4607517-A	0.1759	6E-6	(EA)	0.0648	[0.037-0.093] unit increase	Affymetrix, Illumina [NR] (imputed)	N
922	chr7	44235667	44235668	rs4607517	25631608	Wessel J	2015-01-29	Nat Commun	Low-frequency and rare exome chip variants associate with fasting glucose and type 2 diabetes susceptibility.	Fasting blood glucose	50,900 European ancestry non-diabetic individuals, 9,664 African American non-diabetic individuals	NA	7p13	GCK	rs4607517-A	0.156283963358949	1E-50		0.06261599	[0.054-0.071] unit increase	Illumina [197481]	N
922	chr7	44235667	44235668	rs4607517	22581228	Manning AK	2012-05-13	Nat Genet	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting blood glucose (BMI interaction)	Up to 58,074 European ancestry individuals	Up tp 38,422 European ancestry individuals	7p13	GCK	rs4607517-A	0.1661	8E-56		7.07E-6	[-0.0018-0.00181] unit decrease	Affymetrix, Illumina [~ 2400000] (imputed)	N
922	chr7	44235667	44235668	rs4607517	22581228	Manning AK	2012-05-13	Nat Genet	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting blood glucose	Up to 58,074 European ancestry individuals	Up tp 38,422 European ancestry individuals	7p13	GCK	rs4607517-A	0.1665	6E-52		0.0641	[0.056-0.072] unit increase	Affymetrix, Illumina [~ 2400000] (imputed)	N
922	chr7	44235667	44235668	rs4607517	22508271	Rasmussen-Torvik LJ	2012-04-16	Genet Epidemiol	Fasting glucose GWAS candidate region analysis across ethnic groups in the Multiethnic Study of Atherosclerosis (MESA).	Fasting plasma glucose	2,349 European ancestry individuals, 664 Chinese ancestry individuals, 1,366 African American individuals, 1,171 Hispanic individuals	NA	7p13	GCKR	rs4607517-G	0.19	1E-7	(fasting gluocse)	1.15	[0.72-1.58] mg/dL decrease	Affymetrix [NR] (imputed)	N
922	chr7	44235667	44235668	rs4607517	20081858	Dupuis J	2010-01-17	Nat Genet	New genetic loci implicated in fasting glucose homeostasis and their impact on type 2 diabetes risk.	Homeostasis model assessment of beta-cell function	36,466 European ancestry individuals	62,264 European ancestry individuals	7p13	GCK	rs4607517-A	0.16	2E-16		0.025	[0.015-0.035] unit decrease (replication)	Affymetrix, Illumina [~ 2500000] (imputed)	N
922	chr7	44235667	44235668	rs4607517	20081858	Dupuis J	2010-01-17	Nat Genet	New genetic loci implicated in fasting glucose homeostasis and their impact on type 2 diabetes risk.	Fasting blood glucose	46,186 European ancestry individuals	76,558 European ancestry individuals	7p13	GCK	rs4607517-A	0.16	7E-92		0.062	[0.054-0.07] mmol/L increase (replication)	Affymetrix, Illumina [~ 2500000] (imputed)	N
922	chr7	44235667	44235668	rs4607517	19060907	Prokopenko I	2008-12-01	Nat Genet	Variants in MTNR1B influence fasting glucose levels.	Fasting plasma glucose	35,812 European ancestry individuals	NA	7p13	GCK	rs4607517-A	0.18	1E-25		0.06	[0.05-0.07] mmol/l increase	Affymetrix, Illumina, Perlegen [up to 2557249] (imputed)	N
922	chr7	44240323	44240324	rs1985469	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	7p13		rs1985469-T	NR	2E-283		0.1077	[0.1-0.11] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
922	chr7	44240323	44240324	rs1985469	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	7p13		rs1985469-T	NR	4E-243		0.1079	[0.1-0.11] unit increase	Affymetrix, Illumina [20535873] (imputed)	N
922	chr7	44240663	44240664	rs11540050	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	7p13	YKT6	rs11540050-G	0.949986	2E-12		0.0037062	[0.0027-0.0048] unit increase	Affymetrix [13995440] (imputed)	N
922	chr7	44245362	44245363	rs10278336	22885922	Morris AP	2012-09-01	Nat Genet	Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes.	Type 2 diabetes	6,377 European ancestry male cases, 5,794 European ancestry female cases, 22,243 European ancestry male controls, 34,619 European ancestry female controls	12,938 European ancestry male cases, 8,553 European ancestry female cases, 904 Pakistani ancestry male cases, 274 Pakistani ancestry female cases, 30,273 European ancestry male controls, 25,374 European ancestry female controls, 2,088 Pakistani ancestry male controls, 384 Pakistani ancestry female controls	7p13	GCK	rs10278336-A	0.497434854705026	6E-6		1.07	[1.04-1.10]	Affymetrix, Illumina [up to 2500000] (imputed)	N
922	chr7	44245852	44245853	rs917793	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	Fasting plasma glucose	15,226 British ancestry non-diabetics individuals from 6863 families, 948 British ancestry diabetic individuals from 6863 families.	NA	7p13	YKT6	rs917793-T	0.1831	3E-24		0.15565135	[0.13-0.19] mmol/L increase	Illumina [24111857] (imputed)	N
922	chr7	44245852	44245853	rs917793	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	Fasting plasma glucose	15,226 British ancestry non-diabetics individuals from 6863 families, 948 British ancestry diabetic individuals from 6863 families.	NA	7p13	YKT6	rs917793-T	0.1831	1E-28	(Non diabetics)	0.17493051	[0.14-0.21] mmol/L increase	Illumina [24111857] (imputed)	N
922	chr7	44246270	44246271	rs138715366	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	7p13	YKT6, GCK	rs138715366-C	0.991285	2E-13		0.124407	[0.091-0.158] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
922	chr7	44246270	44246271	rs138715366	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	7p13	YKT6, GCK	rs138715366-C	0.991203	4E-61		0.239889	[0.21-0.27] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
922	chr7	44246270	44246271	rs138715366	27680694	Horikoshi M	2016-10-13	Nature	Genome-wide associations for birth weight and correlations with adult disease.	Birth weight	133,903 European ancestry individuals, 6,635 African American individuals, 420 Turkish ancestry individuals, 365 Moroccan ancestry individuals, 395 Surinamese ancestry individuals, 840 Chinese ancestry individuals.	9,799 European ancestry individuals, 1,449 Filipino ancestry individuals.	7p13	YKT6, GCK	rs138715366-C	0.99	1E-26		0.2441	[0.2-0.29] unit increase	Affymetrix, Illumina [at least 22434434] (imputed)	N
922	chr7	44247257	44247258	rs3824065	28898252	Wheeler E	2017-09-12	PLoS Med	Impact of common genetic determinants of Hemoglobin A1c on type 2 diabetes risk and diagnosis in ancestrally diverse populations: A transethnic genome-wide meta-analysis.	Glycated hemoglobin levels	88,355 European ancestry individuals	NA	7p13	GCK	rs3824065-C	0.5557	4E-35		0.0192	[0.016-0.022] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
922	chr7	44248827	44248828	rs2908282	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	7p13	YKT6	rs2908282-A	0.177394802964819	4E-9		0.0552	[0.037-0.074] unit increase	NR [5035015] (imputed)	N
922	chr7	44255642	44255643	rs878521	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Two-hour glucose	63,396 European ancestry individuals	NA	7p13	CAMK2B	rs878521-A	0.2426	1E-28		0.099	[0.081-0.117] unit increase	Affymetrix, Illumina [30098705] (imputed)	N
922	chr7	44255642	44255643	rs878521	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	200,622 European ancestry individuals	NA	7p13	CAMK2B	rs878521-A	0.2444	3E-174		0.0549	[0.051-0.059] unit increase	Affymetrix, Illumina [34064007] (imputed)	N
922	chr7	44255642	44255643	rs878521	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Fasting blood glucose	6,457 African American individuals, 13,556 Hispanic/Latino individuals, 1,918 Asian ancestry individuals, 1,400 Native Hawaiian ancestry individuals, 412 Native American ancestry individuals, 168 individuals	NA	7p13	NR	rs878521-?	NR	8E-16		0.07524028	[0.057-0.094] unit increase	Illumina [29713514] (imputed)	N
922	chr7	44255642	44255643	rs878521	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	7p13	GCK	rs878521-A	0.2451	2E-13		1.06	[1.04-1.07]	Affymetrix, Illumina [~ 27000000] (imputed)	N
922	chr7	44255642	44255643	rs878521	27005778	Kettunen J	2016-03-23	Nat Commun	Genome-wide study for circulating metabolites identifies 62 loci and reveals novel systemic effects of LPA.	Metabolite levels (small molecules and protein measures)	2,118 Erasmus Rucphen (founder/genetic isolate), 22,807 European ancestry individuals	NA	7p13	GCK	rs878521-A	0.22	8E-14	(Glucose)	0.09	[0.07-0.11] unit increase	Affymetrix, Illumina, Perlegen [12133295] (imputed)	N
922	chr7	44256525	44256526	rs79784692	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	7p13	NR	rs79784692-G	NR	4E-26		0.0495	[0.04-0.059] unit decrease	Affymetrix [9000000] (imputed)	N
922	chr7	44256525	44256526	rs79784692	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	7p13	NR	rs79784692-G	NR	2E-16		0.0394	[0.03-0.049] unit decrease	Affymetrix [9000000] (imputed)	N
922	chr7	44259870	44259871	rs1127065	22399527	Kristiansson K	2012-03-07	Circ Cardiovasc Genet	Genome-wide screen for metabolic syndrome susceptibility Loci reveals strong lipid gene contribution but no evidence for common genetic basis for clustering of metabolic syndrome traits.	Metabolic syndrome	2,637 European ancestry cases, 7,927 European ancestry controls	NA	7p13	CAMK2B	rs1127065-G	0.49	9E-11	(GLU)	0.08	[NR] mmol/l increase	Illumina [1257079] (imputed)	N
922	chr7	44262052	44262053	rs2003563	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	7p13		rs2003563-G	NR	2E-10		0.0292	[0.02-0.038] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
922	chr7	44263027	44263028	rs2075067	31097437	Plotnikov D	2019-05-16	Br J Ophthalmol	Association between birth weight and refractive error in adulthood: a Mendelian randomisation study.	Birth weight	188,039 European ancestry individuals	NA	7p13	NR	rs2075067-A	0.13	3E-8		0.027	[0.017-0.037] z score decrease	Affymetrix [up to 10400000] (imputed)	N
922	chr7	44265178	44265179	rs2075066	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	7p13	CAMK2B	rs2075066-A	0.1851	4E-8		0.2507	[0.16-0.34] mmHg increase	Affymetrix [NR] (imputed)	N
922	chr7	44266183	44266184	rs35452727	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	7p13		rs35452727-T	0.195875525	2E-10		0.07653313	[0.053-0.1] unit increase	Illumina [13429769] (imputed)	N
922	chr7	44266183	44266184	rs35452727	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	7p13		rs35452727-T	0.198422638	3E-9		0.07595203	[0.051-0.101] unit increase	Illumina [13134967] (imputed)	N
922	chr7	44266183	44266184	rs35452727	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	7p13		rs35452727-T	NR	2E-8		0.0642	[0.042-0.087] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
922	chr7	44266183	44266184	rs35452727	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	7p13		rs35452727-?	NR	7E-9				NR [~ 8900000] (imputed)	N
922	chr7	44267537	44267538	rs62459095	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	7p13	CAMK2B	rs62459095-C	0.93822	8E-14		0.0319702	[0.024-0.04] unit increase	Affymetrix [NR] (imputed)	N
922	chr7	44276650	44276651	rs3757837	23989986	Evangelou E	2013-08-29	Ann Rheum Dis	A meta-analysis of genome-wide association studies identifies novel variants associated with osteoarthritis of the hip.	Osteoarthritis (hip)	up to 4,734 European ancestry cases, up to 46,903 European ancestry controls	up to 6,928 European ancestry cases, up to 20,570 European ancestry controls	7p13	CAMK2B	rs3757837-C	0.06	8E-10	(Male-specifc)	1.27	[1.15-1.41]	Illumina [2567279] (imputed)	N
922	chr7	44279569	44279570	rs78454627	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	7p13	NR	rs78454627-A	NR	1E-24		0.07	[0.057-0.083] unit increase	Affymetrix [9000000] (imputed)	N
922	chr7	44279569	44279570	rs78454627	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	7p13	NR	rs78454627-A	NR	2E-29		0.0786	[0.065-0.092] unit increase	Affymetrix [9000000] (imputed)	N
922	chr7	44283660	44283661	rs11768656	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	7p13	NR	rs11768656-T	NR	2E-10		0.0423	[0.029-0.055] unit decrease	Affymetrix [9000000] (imputed)	N
922	chr7	44283660	44283661	rs11768656	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	7p13	NR	rs11768656-T	NR	1E-10		0.0438	[0.03-0.057] unit decrease	Affymetrix [9000000] (imputed)	N
923	chr7	44308991	44308992	rs62459110	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	7p13	NR	rs62459110-C	NR	2E-13		0.0489	[0.036-0.062] unit decrease	Affymetrix [9000000] (imputed)	N
923	chr7	44346335	44346336	rs146929064	29531279	Zhou S	2018-03-12	Sci Rep	Genome-wide association analysis identifies new candidate risk loci for familial intracranial aneurysm in the French-Canadian population.	Intracranial aneurysm	173 French Canadian cases, 1,772 French Canadian controls	2,617 cases, 1,416 controls	7p13	CAMK2B	rs146929064-?		1E-6	(French Canadians)	3.0723288		Illumina [7614484] (imputed)	N
923	chr7	44365548	44365549	rs116913033	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	7p13	GCK	rs116913033-C	0.83	7E-6		1.04	[1.02-1.06]	Affymetrix, Illumina [~ 27000000] (imputed)	N
923	chr7	44371636	44371637	rs6974322	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	7p13		rs6974322-?	NR	8E-9				NR [~ 8900000] (imputed)	N
923	chr7	44377653	44377654	rs28505285	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	7p13		rs28505285-C	0.1884	4E-9		0.0106	[0.0071-0.0141] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
923	chr7	44386548	44386549	rs10951763	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Cerebrospinal fluid p-tau levels in mild cognitive impairment	581 European ancestry mild cognitive impairment cases	NA	7p13	CAMK2B, NUDCD3	rs10951763-G	0.07	4E-7		0.79	[0.48-1.1] unit decrease	Illumina [8446615] (imputed)	N
923	chr7	44419190	44419191	rs11764171	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	7p13	Intergenic	rs11764171-T	0.1806	1E-9	(MTAG)	0.0104	[0.0071-0.0137] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
923	chr7	44420753	44420754	rs11765303	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris color (b* coordinate)	329 South Asian ancestry individuals		7p13	NUDCD3	rs11765303-T	0.684	7E-6		0.373	[0.21-0.53] unit decrease	Illumina [640625] (imputed)	N
924	chr7	44444121	44444122	rs11550029	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	7p13	NR	rs11550029-A	NR	1E-9		0.0186	[0.013-0.025] unit increase	Affymetrix [9000000] (imputed)	N
924	chr7	44513934	44513935	rs113945888	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	7p13	NR	rs113945888-G	NR	2E-11		0.0356	[0.025-0.046] unit increase	Affymetrix [9000000] (imputed)	N
924	chr7	44549861	44549862	rs13236147	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris color (b* coordinate)	329 South Asian ancestry individuals		7p13	AC004938.5	rs13236147-A	0.247	5E-6		0.413	[0.24-0.59] unit increase	Illumina [640625] (imputed)	N
925	chr7	44577621	44577622	rs73107473	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7p13	NR	rs73107473-G	NR	6E-9		0.039	unit decrease	Affymetrix [at least 7091467] (imputed)	N
925	chr7	44577621	44577622	rs73107473	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7p13	NR	rs73107473-G	0.844	5E-8	(EA)	0.038	unit decrease	Affymetrix [at least 7091467] (imputed)	N
925	chr7	44577621	44577622	rs73107473	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7p13	NR	rs73107473-G	NR	2E-10		0.043	unit decrease	Affymetrix [at least 7091467] (imputed)	N
925	chr7	44577621	44577622	rs73107473	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7p13	NR	rs73107473-G	0.844	7E-10	(EA)	0.044	unit decrease	Affymetrix [at least 7091467] (imputed)	N
925	chr7	44578499	44578500	rs35803101	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	7p13	NR	rs35803101-A	NR	5E-10		0.1144	[0.078-0.15] unit decrease	Affymetrix [9000000] (imputed)	N
925	chr7	44578499	44578500	rs35803101	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	7p13	NR	rs35803101-A	NR	2E-12		0.129	[0.093-0.165] unit decrease	Affymetrix [9000000] (imputed)	N
925	chr7	44579179	44579180	rs2072183	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	LDL cholesterol levels	up to 23,353 African ancestry individuals, 13,171 Asian ancestry individuals, up to 82,522 European ancestry individuals, 6,646 Hispanic individuals	NA	7p13		rs2072183-C	0.2422	8E-7	(EA)	1.306	[0.79-1.82] unit increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
925	chr7	44579179	44579180	rs2072183	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7p13	NR	rs2072183-G	NR	6E-6		0.025	unit decrease	Affymetrix [at least 7091467] (imputed)	N
925	chr7	44579179	44579180	rs2072183	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7p13	NR	rs2072183-G	NR	4E-8		0.031	unit decrease	Affymetrix [at least 7091467] (imputed)	N
925	chr7	44579179	44579180	rs2072183	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7p13	NR	rs2072183-G	0.762	1E-7	(EA)	0.033	unit decrease	Affymetrix [at least 7091467] (imputed)	N
925	chr7	44579179	44579180	rs2072183	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Total cholesterol levels	32,576 East Asian ancestry individuals, 187,365 European ancestry individuals	10,855 Chinese ancestry individuals	7p13	NPC1L1	rs2072183-C	0.237	2E-13	(Trans-ethnic initial)	0.0358	[0.027-0.045] unit increase (EA Beta values)	Affymetrix, Illumina [up to 1900000] (imputed)	N
925	chr7	44579179	44579180	rs2072183	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	LDL cholesterol levels	32,285 East Asian ancestry individuals, 173,082 European ancestry individuals	8,478 Chinese ancestry individuals	7p13	NPC1L1	rs2072183-C	0.237	2E-14	(Trans-ethnic initial)	0.0386	[0.029-0.048] unit increase (EA Beta value)	Affymetrix, Illumina [~ 1900000] (imputed)	N
925	chr7	44579179	44579180	rs2072183	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	7p13	NPC1L1	rs2072183-C	0.29	7E-16		0.039	[NR] unit increase	NR [NR] (imputed)	N
925	chr7	44579179	44579180	rs2072183	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	7p13	NPC1L1	rs2072183-C	0.29	4E-15		0.036	[NR] unit increase	NR [NR] (imputed)	N
925	chr7	44579179	44579180	rs2072183	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	LDL cholesterol	95,454 European ancestry individuals	NA	7p13	NPC1L1	rs2072183-A	0.43	4E-11		1.17	[0.8-1.54] mg/dL decrease	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
925	chr7	44579179	44579180	rs2072183	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	Cholesterol, total	100,184 European ancestry individuals	NA	7p13	NPC1L1	rs2072183-C	0.25	3E-11		2.01	[1.44-2.58] mg/dL increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
925	chr7	44579660	44579661	rs759592756	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	135,808 East Asian ancestry individuals	NA	7p13		rs759592756-T	0.00212	2E-10		0.262233	[0.18-0.34] unit decrease	Illumina [13476599] (imputed)	N
925	chr7	44580875	44580876	rs41279633	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Total cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	7p13	NPC1L1	rs41279633-?		5E-12		0.0595	[0.043-0.076] unit decrease	Illumina [31500000] (imputed)	N
925	chr7	44580875	44580876	rs41279633	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Low density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	7p13	NPC1L1	rs41279633-?		3E-15		0.0674	[0.051-0.084] unit decrease	Illumina [31500000] (imputed)	N
925	chr7	44580875	44580876	rs41279633	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7p13	NR	rs41279633-G	NR	5E-9		0.038	unit decrease	Affymetrix [at least 7091467] (imputed)	N
925	chr7	44580875	44580876	rs41279633	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7p13	NR	rs41279633-G	0.851	2E-7	(EA)	0.036	unit decrease	Affymetrix [at least 7091467] (imputed)	N
925	chr7	44580875	44580876	rs41279633	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7p13	NR	rs41279633-G	NR	2E-10		0.042	unit decrease	Affymetrix [at least 7091467] (imputed)	N
925	chr7	44580875	44580876	rs41279633	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7p13	NR	rs41279633-G	0.851	3E-9	(EA)	0.042	unit decrease	Affymetrix [at least 7091467] (imputed)	N
925	chr7	44580875	44580876	rs41279633	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	LDL cholesterol	up 62,166 European ancestry individuals	NA	7p13	NPC1L1	rs41279633-T	0.18	1E-10		0.054	[0.038-0.07] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
925	chr7	44581985	44581986	rs17725246	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	7p13		rs17725246-T	0.817261	1E-8		0.0298952	[0.02-0.04] unit decrease	NR [11722792] (imputed)	N
925	chr7	44581985	44581986	rs17725246	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls	NA	7p13	NPC1L1	rs17725246-C	0.183202	1E-9		0.043688346	[0.03-0.058] unit increase	Affymetrix [7288503] (imputed)	N
925	chr7	44581985	44581986	rs17725246	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	7p13		rs17725246-?	NR	5E-8				NR [~ 8900000] (imputed)	N
925	chr7	44581985	44581986	rs17725246	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	7p13	intergenic	rs17725246-T	0.7925	3E-19		0.03	[0.024-0.036] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
925	chr7	44581985	44581986	rs17725246	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	7p13	intergenic	rs17725246-T	0.7926	2E-22		0.0326	[0.026-0.039] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
925	chr7	44582330	44582331	rs2073547	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	7p13		rs2073547-A	0.816183	1E-8		0.03014	[0.02-0.04] unit increase	NR [11722792] (imputed)	N
925	chr7	44582330	44582331	rs2073547	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	7p13	NR	rs2073547-A	0.816043	4E-88		0.0488167	[0.044-0.054] unit decrease	Affymetrix [15000001]	N
925	chr7	44582330	44582331	rs2073547	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	7p13	NPC1L1	rs2073547-A	0.815991	2E-40		0.0355544	[0.03-0.041] unit decrease	Affymetrix [NR] (imputed)	N
925	chr7	44582330	44582331	rs2073547	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	7p13	NPC1L1	rs2073547-A	0.816044	1E-31		0.0312222	[0.026-0.036] unit decrease	Affymetrix [NR] (imputed)	N
925	chr7	44582330	44582331	rs2073547	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	7p13	OGDH	rs2073547-?	NR	5E-50		0.0488	[0.043-0.054] unit increase	Affymetrix [5701386] (imputed)	N
925	chr7	44582330	44582331	rs2073547	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	LDL cholesterol levels	up to 23,353 African ancestry individuals, 13,171 Asian ancestry individuals, up to 82,522 European ancestry individuals, 6,646 Hispanic individuals	NA	7p13		rs2073547-A	0.7956	8E-7	(EA)	1.327	[0.8-1.85] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
925	chr7	44582330	44582331	rs2073547	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7p13	NR	rs2073547-A	NR	1E-7		0.029	unit decrease	Affymetrix [at least 7091467] (imputed)	N
925	chr7	44582330	44582331	rs2073547	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7p13	NR	rs2073547-A	0.804	4E-7	(EA)	0.032	unit decrease	Affymetrix [at least 7091467] (imputed)	N
925	chr7	44582330	44582331	rs2073547	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7p13	NR	rs2073547-A	NR	3E-9		0.033	unit decrease	Affymetrix [at least 7091467] (imputed)	N
925	chr7	44582330	44582331	rs2073547	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7p13	NR	rs2073547-A	0.804	5E-9	(EA)	0.038	unit decrease	Affymetrix [at least 7091467] (imputed)	N
925	chr7	44584550	44584551	rs10260606	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	VLDL cholesterol levels	115,082 European ancestry individuals	NA	7p13		rs10260606-G	0.817348	2E-10		0.033729	[0.023-0.044] unit decrease	NR [11722792] (imputed)	N
925	chr7	44584550	44584551	rs10260606	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very small VLDL	115,082 European ancestry individuals	NA	7p13		rs10260606-G	0.817348	9E-9		0.0299488	[0.02-0.04] unit decrease	NR [11722792] (imputed)	N
925	chr7	44584550	44584551	rs10260606	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in IDL	115,082 European ancestry individuals	NA	7p13		rs10260606-G	0.817348	5E-8		0.0280966	[0.018-0.038] unit decrease	NR [11722792] (imputed)	N
925	chr7	44584550	44584551	rs10260606	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total free cholesterol levels	115,082 European ancestry individuals	NA	7p13		rs10260606-G	0.817348	3E-8		0.0289494	[0.019-0.039] unit decrease	NR [11722792] (imputed)	N
925	chr7	44584550	44584551	rs10260606	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol minus HDL-C levels	115,082 European ancestry individuals	NA	7p13		rs10260606-G	0.817348	2E-9		0.0316826	[0.021-0.042] unit decrease	NR [11722792] (imputed)	N
925	chr7	44584550	44584551	rs10260606	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Remnant cholesterol (non-HDL, non-LDL -cholesterol)	115,082 European ancestry individuals	NA	7p13		rs10260606-G	0.817348	2E-10		0.0337973	[0.023-0.044] unit decrease	NR [11722792] (imputed)	N
925	chr7	44584550	44584551	rs10260606	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of apolipoprotein B to apolipoprotein A1 levels	115,082 European ancestry individuals	NA	7p13		rs10260606-G	0.817348	3E-9		0.0310619	[0.021-0.041] unit decrease	NR [11722792] (imputed)	N
925	chr7	44584550	44584551	rs10260606	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	7p13		rs10260606-G	0.817213	6E-11		0.0349517	[0.024-0.045] unit decrease	NR [11722792] (imputed)	N
925	chr7	44584550	44584551	rs10260606	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very small VLDL	115,082 European ancestry individuals	NA	7p13		rs10260606-G	0.817348	3E-8		0.0289451	[0.019-0.039] unit decrease	NR [11722792] (imputed)	N
925	chr7	44584550	44584551	rs10260606	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small VLDL	115,082 European ancestry individuals	NA	7p13		rs10260606-G	0.817348	3E-9		0.0316121	[0.021-0.042] unit decrease	NR [11722792] (imputed)	N
925	chr7	44584550	44584551	rs10260606	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium VLDL	115,082 European ancestry individuals	NA	7p13		rs10260606-G	0.817348	9E-10		0.0325605	[0.022-0.043] unit decrease	NR [11722792] (imputed)	N
925	chr7	44584550	44584551	rs10260606	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large LDL	115,082 European ancestry individuals	NA	7p13		rs10260606-G	0.817348	3E-8		0.0292343	[0.019-0.04] unit decrease	NR [11722792] (imputed)	N
925	chr7	44584550	44584551	rs10260606	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in IDL	115,082 European ancestry individuals	NA	7p13		rs10260606-G	0.817348	8E-9		0.0296588	[0.02-0.04] unit decrease	NR [11722792] (imputed)	N
925	chr7	44584550	44584551	rs10260606	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	7p13		rs10260606-G	0.817348	9E-10		0.0319955	[0.022-0.042] unit decrease	NR [11722792] (imputed)	N
925	chr7	44584550	44584551	rs10260606	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	7p13		rs10260606-G	0.817348	1E-10		0.0344065	[0.024-0.045] unit decrease	NR [11722792] (imputed)	N
925	chr7	44584550	44584551	rs10260606	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	7p13		rs10260606-G	0.817348	8E-11		0.0346365	[0.024-0.045] unit decrease	NR [11722792] (imputed)	N
925	chr7	44584550	44584551	rs10260606	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large LDL	115,082 European ancestry individuals	NA	7p13		rs10260606-G	0.817348	4E-8		0.0286859	[0.018-0.039] unit decrease	NR [11722792] (imputed)	N
925	chr7	44584550	44584551	rs10260606	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in VLDL	115,082 European ancestry individuals	NA	7p13		rs10260606-G	0.817348	2E-8		0.0297373	[0.019-0.04] unit decrease	NR [11722792] (imputed)	N
925	chr7	44584550	44584551	rs10260606	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in IDL	115,082 European ancestry individuals	NA	7p13		rs10260606-G	0.817348	1E-8		0.0292598	[0.019-0.039] unit decrease	NR [11722792] (imputed)	N
925	chr7	44584550	44584551	rs10260606	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very small VLDL particles	115,082 European ancestry individuals	NA	7p13		rs10260606-G	0.817348	1E-9		0.0318064	[0.022-0.042] unit decrease	NR [11722792] (imputed)	N
925	chr7	44584550	44584551	rs10260606	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small LDL particles	115,082 European ancestry individuals	NA	7p13		rs10260606-G	0.817348	2E-10		0.0338655	[0.023-0.044] unit decrease	NR [11722792] (imputed)	N
925	chr7	44584550	44584551	rs10260606	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium VLDL particles	115,082 European ancestry individuals	NA	7p13		rs10260606-G	0.817348	2E-9		0.0318674	[0.021-0.042] unit decrease	NR [11722792] (imputed)	N
925	chr7	44584550	44584551	rs10260606	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium LDL particles	115,082 European ancestry individuals	NA	7p13		rs10260606-G	0.817348	2E-9		0.0320357	[0.022-0.043] unit decrease	NR [11722792] (imputed)	N
925	chr7	44584550	44584551	rs10260606	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large LDL particles	115,082 European ancestry individuals	NA	7p13		rs10260606-G	0.817348	2E-8		0.0297901	[0.019-0.04] unit decrease	NR [11722792] (imputed)	N
925	chr7	44584550	44584551	rs10260606	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of VLDL particles	115,082 European ancestry individuals	NA	7p13		rs10260606-G	0.817348	2E-8		0.0298367	[0.019-0.04] unit decrease	NR [11722792] (imputed)	N
925	chr7	44584550	44584551	rs10260606	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of LDL particles	115,082 European ancestry individuals	NA	7p13		rs10260606-G	0.817348	3E-9		0.0317189	[0.021-0.042] unit decrease	NR [11722792] (imputed)	N
925	chr7	44584550	44584551	rs10260606	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of IDL particles	115,082 European ancestry individuals	NA	7p13		rs10260606-G	0.817348	5E-10		0.0328557	[0.023-0.043] unit decrease	NR [11722792] (imputed)	N
925	chr7	44584550	44584551	rs10260606	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Clinical LDL cholesterol levels	115,082 European ancestry individuals	NA	7p13		rs10260606-G	0.817348	2E-8		0.0298522	[0.019-0.04] unit decrease	NR [11722792] (imputed)	N
925	chr7	44584550	44584551	rs10260606	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very small VLDL	115,082 European ancestry individuals	NA	7p13		rs10260606-G	0.817348	3E-10		0.0323933	[0.022-0.042] unit decrease	NR [11722792] (imputed)	N
925	chr7	44584550	44584551	rs10260606	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small VLDL	115,082 European ancestry individuals	NA	7p13		rs10260606-G	0.817348	6E-11		0.0348433	[0.024-0.045] unit decrease	NR [11722792] (imputed)	N
925	chr7	44584550	44584551	rs10260606	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small LDL	115,082 European ancestry individuals	NA	7p13		rs10260606-G	0.817348	2E-8		0.0297875	[0.019-0.04] unit decrease	NR [11722792] (imputed)	N
925	chr7	44584550	44584551	rs10260606	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium VLDL	115,082 European ancestry individuals	NA	7p13		rs10260606-G	0.817348	2E-11		0.0353269	[0.025-0.046] unit decrease	NR [11722792] (imputed)	N
925	chr7	44584550	44584551	rs10260606	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large VLDL	115,082 European ancestry individuals	NA	7p13		rs10260606-G	0.817348	1E-8		0.0301142	[0.02-0.04] unit decrease	NR [11722792] (imputed)	N
925	chr7	44584550	44584551	rs10260606	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in VLDL	115,082 European ancestry individuals	NA	7p13		rs10260606-G	0.817348	2E-11		0.0358518	[0.025-0.046] unit decrease	NR [11722792] (imputed)	N
925	chr7	44584550	44584551	rs10260606	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	7p13		rs10260606-G	0.817348	3E-10		0.0326016	[0.022-0.043] unit decrease	NR [11722792] (imputed)	N
925	chr7	44584550	44584551	rs10260606	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	7p13		rs10260606-G	0.817348	5E-11		0.0349761	[0.025-0.045] unit decrease	NR [11722792] (imputed)	N
925	chr7	44584550	44584551	rs10260606	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small LDL	115,082 European ancestry individuals	NA	7p13		rs10260606-G	0.817348	5E-8		0.029187	[0.019-0.04] unit decrease	NR [11722792] (imputed)	N
925	chr7	44584550	44584551	rs10260606	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	7p13		rs10260606-G	0.817348	2E-11		0.0357975	[0.025-0.046] unit decrease	NR [11722792] (imputed)	N
925	chr7	44584550	44584551	rs10260606	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein B levels	115,082 European ancestry individuals	NA	7p13		rs10260606-G	0.817348	8E-10		0.0327546	[0.022-0.043] unit decrease	NR [11722792] (imputed)	N
925	chr7	44584550	44584551	rs10260606	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	7p13		rs10260606-C	NR	3E-26		0.0318	[0.026-0.038] unit increase	Affymetrix, Illumina [20536134] (imputed)	N
925	chr7	44584550	44584551	rs10260606	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls, 33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	7p13		rs10260606-C	NR	2E-9		0.0434	[0.029-0.058] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
925	chr7	44584550	44584551	rs10260606	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	7p13		rs10260606-C	NR	4E-31		0.0353	[0.029-0.041] unit increase	Affymetrix, Illumina [20521447] (imputed)	N
925	chr7	44584550	44584551	rs10260606	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7p13	NR	rs10260606-G	NR	3E-7		0.028	unit decrease	Affymetrix [at least 7091467] (imputed)	N
925	chr7	44584550	44584551	rs10260606	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7p13	NR	rs10260606-G	0.804	7E-7	(EA)	0.031	unit decrease	Affymetrix [at least 7091467] (imputed)	N
925	chr7	44584550	44584551	rs10260606	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7p13	NR	rs10260606-G	NR	7E-9		0.033	unit decrease	Affymetrix [at least 7091467] (imputed)	N
925	chr7	44584550	44584551	rs10260606	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7p13	NR	rs10260606-G	0.804	1E-8	(EA)	0.037	unit decrease	Affymetrix [at least 7091467] (imputed)	N
925	chr7	44584550	44584551	rs10260606	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	Cholesterol, total	up to 62,166 European ancestry individuals	NA	7p13	NPC1L1	rs10260606-C	0.23	1E-11		0.05	[0.036-0.064] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
925	chr7	44592070	44592071	rs540428	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	7p13		rs540428-A	0.563065	1E-8		0.0239643	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
925	chr7	44592071	44592072	rs540425	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	7p13	NR	rs540425-T	NR	3E-7		1.0638298	[NR]	Illumina [7158791] (imputed)	N
925	chr7	44595059	44595060	rs217396	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x long total sleep time interaction (2df test)	2,913 African American long sleepers, 358 Chinese ancestry long sleepers, 110 Asian ancestry long sleepers, 7,583 European ancestry long sleepers, 1,036 Hispanic/Latino long sleepers, up to 11,862 African American controls, 1,432 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,744 European ancestry controls, 4,066 Hispanic/Latino controls	at least 214 African American long sleepers, 616 East Asian ancestry long sleepers, up to 6,657 European ancestry long sleepers, 2,457 Hispanic long sleepers, at least 913 African American controls, 2,517 East Asian ancestry controls, up to 26,868 European ancestry controls, 9,870 Hispanic controls	7p13	NPC1L1	rs217396-?	NR	1E-19		1.32	[0.96-1.68] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
925	chr7	44600694	44600695	rs217386	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	7p13		rs217386-G	0.573873	2E-10		0.0266844	[0.018-0.035] unit increase	NR [11722792] (imputed)	N
925	chr7	44600694	44600695	rs217386	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	LDL cholesterol levels	up to 23,353 African ancestry individuals, 13,171 Asian ancestry individuals, up to 82,522 European ancestry individuals, 6,646 Hispanic individuals	NA	7p13		rs217386-A	0.4306	2E-11		1.1159	[0.79-1.44] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
925	chr7	44600694	44600695	rs217386	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7p13	NR	rs217386-G	NR	3E-6		0.021	unit increase	Affymetrix [at least 7091467] (imputed)	N
925	chr7	44600694	44600695	rs217386	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7p13	NR	rs217386-G	NR	4E-9		0.027	unit increase	Affymetrix [at least 7091467] (imputed)	N
925	chr7	44600694	44600695	rs217386	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7p13	NR	rs217386-G	0.579	2E-7	(EA)	0.026	unit increase	Affymetrix [at least 7091467] (imputed)	N
925	chr7	44606216	44606217	rs217381	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	7p13	DDX56	rs217381-G	NR	7E-27	(EA)			Affymetrix, Illumina [NR] (imputed)	N
925	chr7	44606216	44606217	rs217381	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	7p13	DDX56	rs217381-G	NR	3E-29				Affymetrix, Illumina [NR] (imputed)	N
925	chr7	44606216	44606217	rs217381	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	7p13	DDX56	rs217381-G	NR	2E-38				Affymetrix, Illumina [NR] (imputed)	N
925	chr7	44606216	44606217	rs217381	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	7p13	DDX56	rs217381-G	NR	1E-35	(EA)			Affymetrix, Illumina [NR] (imputed)	N
925	chr7	44606216	44606217	rs217381	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	7p13	DDX56	rs217381-G	NR	8E-9		0.928	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
925	chr7	44606216	44606217	rs217381	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	7p13	DDX56	rs217381-G	NR	3E-9	(EA)	1.078	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
925	chr7	44606216	44606217	rs217381	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	7p13	DDX56	rs217381-G	NR	1E-6		1.094	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
925	chr7	44606216	44606217	rs217381	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7p13	NR	rs217381-C	NR	3E-6		0.021	unit increase	Affymetrix [at least 7091467] (imputed)	N
925	chr7	44606216	44606217	rs217381	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7p13	NR	rs217381-C	NR	4E-9		0.027	unit increase	Affymetrix [at least 7091467] (imputed)	N
925	chr7	44606216	44606217	rs217381	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7p13	NR	rs217381-C	0.578	2E-7	(EA)	0.026	unit increase	Affymetrix [at least 7091467] (imputed)	N
925	chr7	44612228	44612229	rs2289057	32314116	Zhang H	2020-04-20	Osteoporos Int	Pleiotropic loci underlying bone mineral density and bone size identified by a bivariate genome-wide association analysis.	Hip bone size	3,267 European ancestry individuals, 1,619 Chinese ancestry individuals, 843 African American individuals, 446 Hispanic individuals	NA	7p13	NR	rs2289057-G	NR	2E-12		0.12	[0.081-0.159] unit increase	Affymetrix, Illumina [NR] (imputed)	N
925	chr7	44612228	44612229	rs2289057	32314116	Zhang H	2020-04-20	Osteoporos Int	Pleiotropic loci underlying bone mineral density and bone size identified by a bivariate genome-wide association analysis.	Bone mineral density (hip) and hip bone size	3,267 European ancestry individuals, 1,619 Chinese ancestry individuals, 843 African American individuals, 446 Hispanic individuals	NA	7p13	NR	rs2289057-G	NR	6E-12				Affymetrix, Illumina [NR] (imputed)	N
925	chr7	44612453	44612454	rs217373	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	7p13	NR	rs217373-?	NR	1E-32				Affymetrix [NR]	N
925	chr7	44622285	44622286	rs217358	30670697	Kilpelainen TO	2019-01-22	Nat Commun	Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity.	LDL cholesterol x physical activity interaction (2df test)	7,260 African American inactive individuals, 12,761 African American active individuals, 2,740 Asian ancestry inactive individuals, 3,615 Asian ancestry active individuals, 22,378 European ancestry inactive individuals, 55,310 European ancestry active individuals, 2,163 Hispanic or Latin American inactive individuals, 3,461 Hispanic or Latin American active individuals	571 African American inactive individuals, 1,521 African American active individuals, 1,217 South African Black ancestry inactive individuals, 389 South African Black ancestry active individuals, 2,495 East Asian ancestry inactive individuals, 1,947 East Asian ancestry active individuals,  724 South Asian ancestry inactive individuals, 1,425 South Asian ancestry active individuals,  33,796 European ancestry inactive individuals, 50,812 European ancestry active individuals, 2,578 Hispanic inactive individuals, 8,661 Hispanic active individuals	7p13	NR	rs217358-A	0.4195	1E-18				Affymetrix, Illumina [at least 2500000] (imputed)	N
925	chr7	44627397	44627398	rs10271770	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	7p13		rs10271770-C	0.668018	8E-9		0.0255611	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
925	chr7	44629605	44629606	rs191955602	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	7p13	NR	rs191955602-?	NR	1E-6		4.852	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
925	chr7	44633218	44633219	rs2117512	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x short total sleep time interaction (2df test)	2,974 African American short sleepers, 365 Chinese ancestry short sleepers, 110 Asian ancestry short sleepers, at least 8,230 European ancestry short sleepers, 1,079 Hispanic/Latino short sleepers, 11,801 African American controls, 1,425 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,097 European ancestry controls, 4,023 Hispanic/Latino controls	at least 214 African American short sleepers, 629 East Asian ancestry short sleepers, up to 6,761 European ancestry short sleepers, 2,473 Hispanic short sleepers, at least 913 African American controls, 2,504 East Asian ancestry controls, up to 26,764 European ancestry controls, 9,854 Hispanic controls	7p13	NPC1L1	rs2117512-?	NR	2E-13		1.254	[0.9-1.6] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
925	chr7	44695472	44695473	rs141678366	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7p13		rs141678366-?	NR	2E-8				NR [~ 8900000] (imputed)	N
926	chr7	44705979	44705980	rs10247064	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		OGDH	rs10247064-?	NR	2E-8	(female)	1.38205	[NR] unit decrease	Affymetrix [NR] (imputed)	N
926	chr7	44737678	44737679	rs17133935	27980656	Justice AE	2016-10-18	BMC Proc	Genome-wide association of trajectories of systolic blood pressure change.	Systolic blood pressure change trajectory	up to 683 Mexican American individuals from 20 families	NA	7p13	OGDH	rs17133935-G		3E-7	(Trajectory class 5)	0.3	[0.18-0.42] unit increase	Illumina [at least 472049] (imputed)	N
926	chr7	44749569	44749570	rs11769862	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in never smokers	2,355 European ancestry cases,  7,504 European ancestry controls	NA	7p13	OGDH	rs11769862-T	0.029014328	9E-6		1.7594036	[1.370410647-2.258812715]	Illumina [10439017] (imputed)	N
926	chr7	44769012	44769013	rs799443	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	7p13		rs799443-A	0.6617	1E-10	(conditional-joint)	0.0097	[0.0068-0.0126] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
926	chr7	44769189	44769190	rs799444	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	7p13	NR	rs799444-?	NR	3E-10				Affymetrix [~ 8270000] (imputed)	N
926	chr7	44769189	44769190	rs799444	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	7p13	NR	rs799444-T	NR	2E-11		6.674	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
926	chr7	44771670	44771671	rs55959091	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	7p13		rs55959091-A	0.131471	3E-12		0.022910085	[0.016-0.029] unit increase	Affymetrix [93095623] (imputed)	N
926	chr7	44773309	44773310	rs4720476	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	7p13	ZMIZ2	rs4720476-T	NR	4E-8		5.48	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
926	chr7	44774643	44774644	rs12538108	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	7p13	ZMIZ2	rs12538108-T	NR	3E-9		0.018244987	[0.012-0.024] unit decrease	Affymetrix [NR]	N
926	chr7	44777446	44777447	rs141379002	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	7p13	NR	rs141379002-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
926	chr7	44781356	44781357	rs73109456	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	7p13	NR	rs73109456-C	NR	1E-9		0.022	[0.015-0.029] unit decrease	Affymetrix [9000000] (imputed)	N
926	chr7	44784696	44784697	rs799449	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	7p13		rs799449-?	NR	2E-14				NR [~ 8900000] (imputed)	N
926	chr7	44785799	44785800	rs73109460	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Docosahexaenoic acid levels	115,006 European ancestry individuals	NA	7p13		rs73109460-G	0.876386	4E-9		0.0352118	[0.023-0.047] unit increase	NR [11722792] (imputed)	N
926	chr7	44787311	44787312	rs57003656	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	16,579 African American individuals	NA	7p13	ZMIZ2	rs57003656-C	0.0535	2E-6		0.0683	[0.038-0.098] unit increase	Affymetrix, Illumina [27843817] (imputed)	N
926	chr7	44788656	44788657	rs6962280	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	7p13		rs6962280-G	NR	3E-12		0.0152	[0.011-0.02] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
926	chr7	44788656	44788657	rs6962280	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	7p13	NR	rs6962280-?	NR	1E-13				Affymetrix [~ 8270000] (imputed)	N
926	chr7	44788656	44788657	rs6962280	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	7p13	NA	rs6962280-A	0.4363	3E-13		0.014	[0.01-0.018] unit decrease	NR [~ 27400000] (imputed)	N
926	chr7	44788656	44788657	rs6962280	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	7p13	NA	rs6962280-A	0.4363	3E-13		0.014	[0.01-0.018] unit decrease	NR [~ 27400000] (imputed)	N
926	chr7	44790987	44790988	rs799451	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	7p13		rs799451-A	NR	6E-11		0.0114	[0.0081-0.0147] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
926	chr7	44798697	44798697	rs199861415	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	7p13	NR	rs199861415-AC	0.211789	8E-16		0.00813397	[0.006-0.0103] unit increase	Affymetrix [16582909] (imputed)	N
926	chr7	44798697	44798697	rs199861415	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	7p13	NR	rs199861415-AC	0.211789	4E-8		0.0063973	[0.004-0.0088] unit increase	Affymetrix [16582965] (imputed)	N
926	chr7	44800175	44800176	rs3735478	33563987	Tyrrell J	2021-02-09	Nat Commun	Genetic predictors of participation in optional components of UK Biobank.	Participation in an health questionnaire (not invited vs invited)	336,633 European ancestry cases, 114,464 European ancestry controls	NA	7p13	NR	rs3735478-G	0.708418	2E-8		1.006	[1.004, 1.007]	Affymetrix [39302896] (imputed)	N
926	chr7	44800175	44800176	rs3735478	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	7p13	NR	rs3735478-G	0.304175	8E-13		0.049037535	[0.036-0.062] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
926	chr7	44800175	44800176	rs3735478	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Ease of getting up in the morning	385,949 European ancestry individuals	NA	7p13	NR	rs3735478-T	0.2908	2E-8		0.0107	[0.007-0.0144] unit decrease	Affymetrix, Illumina [10862568] (imputed)	N
926	chr7	44800175	44800176	rs3735478	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	7p13		rs3735478-T	0.2932	4E-12		0.0108	[0.0077-0.0139] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
926	chr7	44800175	44800176	rs3735478	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	7p13	Intergenic	rs3735478-T	0.2932	2E-14	(MTAG)	0.0111	[0.0084-0.0138] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
926	chr7	44800175	44800176	rs3735478	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	7p13	Intergenic	rs3735478-T	0.2912	2E-13	(MTAG)	0.0186	[0.014-0.023] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
926	chr7	44800175	44800176	rs3735478	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	7p13	Intergenic	rs3735478-T	0.2912	5E-13		0.0228	[0.017-0.029] unit increase	Affymetrix, Illumina [10100000] (imputed)	N
926	chr7	44800175	44800176	rs3735478	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	7p13	NR	rs3735478-T	NR	4E-11		6.599	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
926	chr7	44800175	44800176	rs3735478	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	7p13	ZMIZ2	rs3735478-T	NR	4E-10		0.020786583	[0.014-0.027] unit increase	Affymetrix [NR]	N
926	chr7	44801681	44801682	rs111363146	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	7p13	ZMIZ2	rs111363146-T	0.862841	9E-14		0.00550793	[0.004-0.007] unit increase	Affymetrix [13995440] (imputed)	N
926	chr7	44801681	44801682	rs111363146	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	7p13	NR	rs111363146-C	0.135844	8E-16		0.022228	[0.017-0.028] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
926	chr7	44801681	44801682	rs111363146	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	7p13	NR	rs111363146-T	0.862026	1E-8		0.0162846	[0.011-0.022] unit decrease	NR [NR]	N
926	chr7	44803943	44803944	rs79784917	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p13	NR	rs79784917-T	0.117326	2E-13				Affymetrix, Illumina [23467995] (imputed)	N
926	chr7	44804224	44804225	rs2289379	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	7p13		rs2289379-T	NR	2E-10		0.0117	[0.0082-0.0152] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
926	chr7	44804224	44804225	rs2289379	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	7p13		rs2289379-T	NR	2E-14		0.0139	[0.01-0.017] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
926	chr7	44804224	44804225	rs2289379	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	7p13		rs2289379-T	NR	4E-15		0.0165	[0.012-0.021] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
926	chr7	44804224	44804225	rs2289379	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		7p13	ZMIZ2	rs2289379-C	0.60427	4E-12		0.00975934	[0.007-0.0125] unit increase	Affymetrix [12370749]	N
926	chr7	44808016	44808017	rs1050327	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	7p13	ZMIZ2	rs1050327-A	NR	2E-9		0.0183503	[0.012-0.024] unit decrease	Affymetrix [NR]	N
926	chr7	44808090	44808091	rs1050331	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	7p13	NR	rs1050331-T	NR	2E-9		5.981	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
926	chr7	44808222	44808223	rs1050338	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	7p13	ZMIZ2	rs1050338-A	0.453802	7E-10		0.013684076	[0.0093-0.018] unit decrease	Affymetrix [93095623] (imputed)	N
926	chr7	44808222	44808223	rs1050338	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	7p13	ZMIZ2	rs1050338-A	0.456	1E-17		0.03055909	[0.024-0.038] unit decrease	Affymetrix [~ 2500000] (imputed)	N
926	chr7	44811220	44811221	rs73109480	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	7p13	NR	rs73109480-T	0.07131799999999999	2E-12		0.0149008	[0.01-0.019] unit increase	Affymetrix [16582621] (imputed)	N
926	chr7	44811220	44811221	rs73109480	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	7p13	NR	rs73109480-T	0.07131799999999999	3E-9		0.01357	[0.0089-0.0183] unit increase	Affymetrix [16582614] (imputed)	N
926	chr7	44811222	44811223	rs10252662	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	7p13		rs10252662-?	NR	4E-17				NR [~ 8900000] (imputed)	N
926	chr7	44812337	44812338	rs13224222	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	7p13	ZMIZ2	rs13224222-T	0.4571	3E-8		0.011277722	[0.0073-0.0153] unit decrease	Affymetrix [up to 18485882] (imputed)	N
926	chr7	44812606	44812607	rs12702087	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	7p13	NR	rs12702087-A	0.4594	2E-9		0.013432142	NR unit increase	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
926	chr7	44814171	44814172	rs13231886	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	7p13	ZMIZ2	rs13231886-A	0.4026	1E-26		0.03861984	[0.032-0.046] unit increase	Affymetrix [~ 2500000] (imputed)	N
926	chr7	44819239	44819240	rs112942650	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	7p13	ZMIZ2	rs112942650-A	0.924127	2E-9		0.0222931	[0.015-0.03] unit increase	Affymetrix [NR] (imputed)	N
926	chr7	44825520	44825521	rs62460488	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	7p13	NR	rs62460488-T	NR	2E-10		0.0398	[0.027-0.052] unit decrease	Affymetrix [9000000] (imputed)	N
927	chr7	44833064	44833065	rs13236827	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p13	NR	rs13236827-C	0.583781	1E-24				Affymetrix, Illumina [17210439] (imputed)	N
927	chr7	44833064	44833065	rs13236827	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p13	NR	rs13236827-T	0.366468	1E-14				Affymetrix, Illumina [24558453] (imputed)	N
927	chr7	44833064	44833065	rs13236827	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	7p13	NR	rs13236827-T	0.425397	6E-14		0.014089	[0.01-0.018] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
927	chr7	44835152	44835153	rs4720485	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	7p13	NR	rs4720485-A	NR	2E-8		5.598	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
927	chr7	44849434	44849435	rs185203327	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	7p13	NR	rs185203327-?	NR	8E-7	(EA)	0.6381	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
927	chr7	44851410	44851411	rs13238404	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	7p13	PPIA	rs13238404-T	0.495192	3E-73		0.040551573	[0.036-0.045] unit decrease	Affymetrix [93095623] (imputed)	N
927	chr7	44860762	44860763	rs12702091	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p13	NR	rs12702091-C	0.587819	3E-11				Affymetrix, Illumina [22063850] (imputed)	N
927	chr7	44860762	44860763	rs12702091	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	7p13	NR	rs12702091-C	0.578445	2E-13		0.014047	[0.01-0.018] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
927	chr7	44865063	44865064	rs10278679	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	7p13	H2AFV, PPIA	rs10278679-G	0.438941	7E-37		0.028105441	[0.024-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
927	chr7	44870932	44870933	rs10267576	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	7p13	NR	rs10267576-C	0.43473	4E-53		0.028511	[0.025-0.032] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
927	chr7	44870932	44870933	rs10267576	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	7p13	H2AFV	rs10267576-C	0.4338	6E-20		0.03245668	[0.025-0.039] unit increase	Affymetrix [~ 2500000] (imputed)	N
927	chr7	44872899	44872900	rs7789162	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	7p13		rs7789162-T	0.495	2E-31		0.13	[-0.15--0.11] % decrease	Affymetrix [NR] (imputed)	N
927	chr7	44872899	44872900	rs7789162	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	7p13	NR	rs7789162-C	0.506159	1E-53		0.027956	[0.024-0.032] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
927	chr7	44872899	44872900	rs7789162	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	7p13	NR	rs7789162-C	0.505492	3E-53		0.029546	[0.026-0.033] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
927	chr7	44872899	44872900	rs7789162	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	7p13		rs7789162-?	NR	6E-10				NR [~ 8900000] (imputed)	N
927	chr7	44872899	44872900	rs7789162	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	7p13		rs7789162-?	NR	3E-53				NR [~ 8900000] (imputed)	N
927	chr7	44872910	44872911	rs7805890	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	7p13	H2AFV	rs7805890-G	0.505307	1E-67		0.038686424	[0.034-0.043] unit increase	Affymetrix [93095623] (imputed)	N
927	chr7	44872910	44872911	rs7805890	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	7p13	H2AFV	rs7805890-G	0.505473	9E-41		0.0297306	[0.026-0.034] unit increase	Affymetrix [93095623] (imputed)	N
927	chr7	44872910	44872911	rs7805890	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	7p13	H2AFV	rs7805890-G	0.505491	8E-41		0.029443104	[0.025-0.034] unit increase	Affymetrix [93095623] (imputed)	N
927	chr7	44872976	44872977	rs12155038	33385171	Hagg S	2020-12-31	Hum Genet	Deciphering the genetic and epidemiological landscape of mitochondrial DNA abundance.	Mitochondrial DNA levels	295,150 European ancestry individuals	NA	7p13	NR	rs12155038-A	0.4443	2E-8		0.0146519	[0.0096-0.0197] unit decrease	Affymetrix [3505788] (imputed)	N
927	chr7	44872976	44872977	rs12155038	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	7p13		rs12155038-?	NR	2E-9				NR [~ 8900000] (imputed)	N
927	chr7	44873124	44873125	rs12155039	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	7p13		rs12155039-C	0.564	2E-26				Affymetrix [10369434] (imputed)	N
927	chr7	44873124	44873125	rs12155039	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	7p13	H2AFV	rs12155039-A	0.435249	5E-107		0.0500597	[0.046-0.055] unit decrease	Affymetrix [93095623] (imputed)	N
927	chr7	44873124	44873125	rs12155039	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	7p13	H2AFV	rs12155039-A	0.435244	3E-54		0.03521258	[0.031-0.04] unit decrease	Affymetrix [93095623] (imputed)	N
927	chr7	44873124	44873125	rs12155039	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	7p13	NR	rs12155039-C	0.564419	1E-26		0.020604	[0.017-0.024] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
927	chr7	44873124	44873125	rs12155039	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	7p13		rs12155039-?	NR	2E-52				NR [~ 8900000] (imputed)	N
927	chr7	44873124	44873125	rs12155039	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	7p13	H2AFV	rs12155039-A	0.4365	3E-11		0.02415063	[0.017-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
927	chr7	44874112	44874113	rs1802437	35215271	Almandil NB	2022-01-27	Pharmaceuticals (Basel)	Integration of Transcriptome and Exome Genotyping Identifies Significant Variants with Autism Spectrum Disorder.	Autism spectrum disorder	70 Arab ancestry cases, 132 Arab ancestry controls	NA	7p13	NA	rs1802437-T	0.5698	7E-6		0.3336	[0.2051-0.5428]	Illumina [243345]	N
927	chr7	44879601	44879609	rs149563809	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	7p13	H2AFV	rs149563809-A	0.464192	4E-9		0.013314198	[0.0089-0.0177] unit decrease	Affymetrix [93095623] (imputed)	N
927	chr7	44887075	44887076	rs714543	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	7p13		rs714543-G	NR	1E-38		0.0277	[0.024-0.032] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
927	chr7	44887075	44887076	rs714543	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	7p13		rs714543-G	NR	7E-44		0.0296	[0.025-0.034] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
927	chr7	44887075	44887076	rs714543	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p13	NR	rs714543-G	0.373432	1E-56				Affymetrix, Illumina [24332387] (imputed)	N
927	chr7	44887075	44887076	rs714543	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p13	NR	rs714543-G	0.381505	1E-54				Affymetrix, Illumina [24246363] (imputed)	N
927	chr7	44887075	44887076	rs714543	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p13	NR	rs714543-G	0.377004	8E-55				Affymetrix, Illumina [20825802] (imputed)	N
927	chr7	44887075	44887076	rs714543	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	7p13	H2AFV	rs714543-G	0.4346	2E-50		0.0549308	[0.048-0.062] unit decrease	Affymetrix [~ 2500000] (imputed)	N
927	chr7	44888028	44888029	rs757693	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	7p13		rs757693-A	NR	2E-44		0.0257	[0.022-0.029] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
927	chr7	44897421	44897422	rs1985601	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	7p13		rs1985601-A	0.393625	7E-20		0.020894973	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
927	chr7	44904212	44904213	rs55741472	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	7p13		rs55741472-G	NR	8E-10		0.0384	[0.026-0.051] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
927	chr7	44919000	44919001	rs112760637	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	7p13		rs112760637-G	NR	3E-39		0.0307	[0.026-0.035] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
927	chr7	44925895	44925896	rs1990053	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation PhenoAge acceleration	34,463 European ancestry individuals, 6,148 African American individuals	NA	7p13	NR	rs1990053-?	NR	6E-11				Affymetrix, Illumina [6210360] (imputed)	N
927	chr7	44925895	44925896	rs1990053	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation PhenoAge acceleration	34,463 European ancestry individuals	NA	7p13	NR	rs1990053-A	0.4231	2E-11		0.2573	[0.18-0.33] unit increase	Affymetrix, Illumina [7568033] (imputed)	N
927	chr7	44926826	44926827	rs2331174	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p13	NR	rs2331174-A	0.374317	1E-77				Affymetrix, Illumina [24588908] (imputed)	N
927	chr7	44926826	44926827	rs2331174	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	7p13	NR	rs2331174-A	0.434395	2E-74		0.033913	[0.03-0.038] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
927	chr7	44926826	44926827	rs2331174	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	7p13	PURB	rs2331174-A	0.434	8E-23		0.03629182	[0.029-0.044] unit decrease	Affymetrix [~ 2500000] (imputed)	N
927	chr7	44934520	44934521	rs35735865	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	7p13	NR	rs35735865-A	0.380751	8E-13		0.016565349	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
927	chr7	44946240	44946241	rs2040879	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Reaction time	330,024 British ancestry individuals	NA	7p13		rs2040879-?	NR	2E-10				NR [7857346] (imputed)	N
927	chr7	44946240	44946241	rs2040879	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	7p13	ENSG00000230160	rs2040879-?	NR	3E-10		0.01121	[0.0077-0.0147] unit increase	Affymetrix [805426] (imputed)	N
927	chr7	44956036	44956037	rs541373378	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	7p13	AC004854.5	rs541373378-C	0.517991	3E-11		0.0154284565	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
928	chr7	44961336	44961337	rs55738054	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	7p13	ENSG00000230160	rs55738054-?	NR	2E-9		0.01042	[0.007-0.0138] unit decrease	Affymetrix [805426] (imputed)	N
928	chr7	44976348	44976349	rs1990042	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Schizoaffective disorder-bipolar type	977 European ancestry cases, 31,358 European ancestry controls	NA	7p13	NR	rs1990042-C	0.724	1E-6		1.405936	[NR]	NR [9372253] (imputed)	N
928	chr7	44980823	44980824	rs12538191	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Bipolar disorder vs major depressive disorder (ordinary least squares (OLS))	20,352 bipolar disorder cases, 170,756 major depressive disorder cases	NA	7p13		rs12538191-?	NR	2E-8		0.0154	NR unit decrease	NR [6265453] (imputed)	N
928	chr7	44985668	44985669	rs11972012	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar I disorder	14,879 European ancestry cases, 31,358 European ancestry controls	NA	7p13	NR	rs11972012-G	0.75	2E-7		1.1122727	[NR]	NR [9372253] (imputed)	N
928	chr7	44985747	44985748	rs139195756	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,931 Sub-Saharan African ancestry males	NA	7p13		rs139195756-T	0.983102	8E-6		0.0507914	[0.029-0.073] unit decrease	Illumina [13900000] (imputed)	N
928	chr7	44989409	44989410	rs192526513	30306274	Shah RL	2018-10-10	Hum Genet	Genome-wide association studies for corneal and refractive astigmatism in UK Biobank demonstrate a shared role for myopia susceptibility loci.	Refractive astigmatism	70,505 European ancestry cases, 17,500 European ancestry controls	NA	7p13	MYO1G	rs192526513-A	NR	6E-6		1.245	[1.150-1.340]	NR [5919636] (imputed)	N
928	chr7	44991504	44991505	rs78184724	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial squamous cell lung carcinoma	367 European ancestry cases, 31,563 European ancestry controls	NA	7p13	NR	rs78184724-G	0.013	6E-6		4.68	[2.40-9.13]	Illumina [7959153] (imputed)	N
928	chr7	45008505	45008506	rs10253506	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	7p13	MYO1G	rs10253506-C	0.844413	4E-18		0.026435973	[0.02-0.032] unit increase	Affymetrix [93095623] (imputed)	N
928	chr7	45009340	45009341	rs3735485	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	7p13		rs3735485-G	NR	1E-37		0.0383	[0.032-0.044] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
928	chr7	45009340	45009341	rs3735485	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	7p13		rs3735485-G	NR	9E-18		0.0267	[0.021-0.033] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
928	chr7	45009340	45009341	rs3735485	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	7p13		rs3735485-G	NR	3E-43		0.0426	[0.037-0.049] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
928	chr7	45009340	45009341	rs3735485	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	7p13		rs3735485-A	0.155	9E-15				Affymetrix [10369434] (imputed)	N
928	chr7	45009340	45009341	rs3735485	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	7p13		rs3735485-A	0.155	3E-15				Affymetrix [10369434] (imputed)	N
928	chr7	45009340	45009341	rs3735485	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	7p13		rs3735485-A	0.155	4E-32				Affymetrix [10369434] (imputed)	N
928	chr7	45009340	45009341	rs3735485	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	7p13		rs3735485-A	0.155	2E-33				Affymetrix [10369434] (imputed)	N
928	chr7	45009340	45009341	rs3735485	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	7p13		rs3735485-A	0.155	2E-17				Affymetrix [10369434] (imputed)	N
928	chr7	45009340	45009341	rs3735485	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	7p13	MYO1G	rs3735485-G	0.845284	3E-37		0.038908046	[0.033-0.045] unit increase	Affymetrix [93095623] (imputed)	N
928	chr7	45009340	45009341	rs3735485	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	7p13	MYO1G	rs3735485-G	0.845234	1E-30		0.035277557	[0.029-0.041] unit decrease	Affymetrix [93095623] (imputed)	N
928	chr7	45009340	45009341	rs3735485	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	7p13	MYO1G	rs3735485-G	0.845256	3E-50		0.045616455	[0.04-0.052] unit increase	Affymetrix [93095623] (imputed)	N
928	chr7	45009340	45009341	rs3735485	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	7p13	MYO1G	rs3735485-G	0.845208	4E-9		0.018140938	[0.012-0.024] unit increase	Affymetrix [93095623] (imputed)	N
928	chr7	45009340	45009341	rs3735485	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p13	NR	rs3735485-G	0.864755	1E-59				Affymetrix, Illumina [24649327] (imputed)	N
928	chr7	45009340	45009341	rs3735485	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	7p13	NR	rs3735485-G	0.844672	2E-57		0.041036	[0.036-0.046] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
928	chr7	45009340	45009341	rs3735485	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p13	NR	rs3735485-G	0.858024	2E-25				Affymetrix, Illumina [23114412] (imputed)	N
928	chr7	45009340	45009341	rs3735485	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	7p13	NR	rs3735485-G	0.844938	4E-28		0.029483	[0.024-0.035] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
928	chr7	45009340	45009341	rs3735485	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p13	NR	rs3735485-G	0.859096	7E-61				Affymetrix, Illumina [23472807] (imputed)	N
928	chr7	45009340	45009341	rs3735485	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	7p13	NR	rs3735485-G	0.844816	4E-63		0.044361	[0.039-0.05] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
928	chr7	45009340	45009341	rs3735485	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	7p13		rs3735485-?	NR	3E-47				NR [~ 8900000] (imputed)	N
928	chr7	45009340	45009341	rs3735485	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	7p13	MYO1G	rs3735485-G	0.8456	4E-20		0.04554584	[0.036-0.055] unit increase	Affymetrix [~ 2500000] (imputed)	N
928	chr7	45009340	45009341	rs3735485	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	7p13	MYO1G	rs3735485-G	0.8456	3E-11		0.03301724	[0.023-0.043] unit increase	Affymetrix [~ 2500000] (imputed)	N
928	chr7	45009340	45009341	rs3735485	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	7p13	MYO1G	rs3735485-G	0.8456	4E-11		0.03277287	[0.023-0.042] unit increase	Affymetrix [~ 2500000] (imputed)	N
928	chr7	45009340	45009341	rs3735485	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	7p13	MYO1G	rs3735485-G	0.8456	4E-11		0.03266776	[0.023-0.042] unit increase	Affymetrix [~ 2500000] (imputed)	N
928	chr7	45009340	45009341	rs3735485	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	7p13	MYO1G	rs3735485-G	0.8456	3E-10		0.03145505	[0.022-0.041] unit increase	Affymetrix [~ 2500000] (imputed)	N
928	chr7	45009340	45009341	rs3735485	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	7p13	MYO1G	rs3735485-G	0.8456	7E-15		0.03833827	[0.029-0.048] unit decrease	Affymetrix [~ 2500000] (imputed)	N
928	chr7	45009340	45009341	rs3735485	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	7p13	MYO1G	rs3735485-G	0.8457	2E-23		0.04963954	[0.04-0.059] unit increase	Affymetrix [~ 2500000] (imputed)	N
928	chr7	45009340	45009341	rs3735485	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	7p13	MYO1G	rs3735485-G	0.8456	2E-9		0.02964378	[0.02-0.039] unit increase	Affymetrix [~ 2500000] (imputed)	N
928	chr7	45009340	45009341	rs3735485	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	7p13	MYO1G	rs3735485-G	0.8456	3E-11		0.03290478	[0.023-0.043] unit increase	Affymetrix [~ 2500000] (imputed)	N
928	chr7	45014303	45014304	rs6976664	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Pursuit maintenance gain	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	7p13	MYO1G	rs6976664-T	0.1416	3E-6				Illumina [4404269] (imputed)	N
928	chr7	45025719	45025720	rs3213658	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7p13		rs3213658-?	NR	3E-8				NR [~ 8900000] (imputed)	N
928	chr7	45036784	45036785	rs73105827	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	NA	7p13	CCM2	rs73105827-G	0.9091	2E-9		0.1878	[0.13-0.25] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
928	chr7	45077977	45077978	rs2107732	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	7p13	CCM2	rs2107732-G	0.914336	2E-6		1.07	[1.04-1.10]	NR [8126035] (imputed)	N
928	chr7	45077977	45077978	rs2107732	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	7p13		rs2107732-A	0.0916	8E-11		0.15344296	[0.11-0.2] mmHg decrease	Affymetrix, Illumina [242866] (imputed)	N
928	chr7	45077977	45077978	rs2107732	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	7p13	CCM2	rs2107732-A	0.0874	4E-8		0.0567	[0.037-0.077] unit decrease	Affymetrix [at least 7947838] (imputed)	N
928	chr7	45077977	45077978	rs2107732	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	7p13	CCM2	rs2107732-A	0.087	2E-7		0.061	[0.037-0.085] unit decrease	Affymetrix [7947838] (imputed)	N
929	chr7	45089725	45089726	rs7778729	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	7p13		rs7778729-C	NR	1E-12		0.0132	[0.0095-0.0169] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
929	chr7	45089725	45089726	rs7778729	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p13	NR	rs7778729-C	0.268226	2E-14				Affymetrix, Illumina [19872809] (imputed)	N
929	chr7	45106500	45106501	rs531025555	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	7p13	CCM2	rs531025555-A	0.319911	4E-12		0.017368358	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
929	chr7	45116467	45116468	rs3735491	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Colorectal cancer	6,581 European ancestry cases, 463,421 European ancestry controls, 8,305 East Asian ancestry cases, 159,386 East Asian ancestry controls	NA	7p13		rs3735491-A	NR	5E-8		0.0849	[0.054-0.115] unit decrease	Affymetrix, Illumina [25843452] (imputed)	N
929	chr7	45116467	45116468	rs3735491	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	7p13	NACAD, CCM2	rs3735491-A	0.277504	8E-15		0.01921627	[0.014-0.024] unit increase	Affymetrix [93095623] (imputed)	N
929	chr7	45116467	45116468	rs3735491	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	7p13	NR	rs3735491-A	0.276595	6E-17		0.018545	[0.014-0.023] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
929	chr7	45116467	45116468	rs3735491	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	7p13	NR	rs3735491-C	0.6921	7E-9		0.025	[0.017-0.033] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
929	chr7	45116467	45116468	rs3735491	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	7p13		rs3735491-?	NR	1E-19				NR [~ 8900000] (imputed)	N
929	chr7	45136422	45136423	rs12672022	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	7p13	NR	rs12672022-T	0.8387	3E-8		1.07	[1.04-1.09]	Affymetrix, Illumina [16900397] (imputed)	N
929	chr7	45143502	45143503	rs3801407	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	7p13	TBRG4	rs3801407-A	0.171453	4E-9		0.017627161	[0.012-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
929	chr7	45148666	45148667	rs2304693	35023831	Chong M	2022-01-13	Elife	GWAS and ExWAS of blood Mitochondrial DNA copy number identifies 71 loci and highlights a potential causal role in dementia.	Mitochondrial DNA copy number	395,718 British, Irish, Other White, South Asian, African ancestry individuals	NA	7p13	NR	rs2304693-A	0.126398	5E-11		0.0181	[0.013-0.024] unit increase	Affymetrix [23037915] (imputed)	N
929	chr7	45148666	45148667	rs2304693	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	7p13	NR	rs2304693-A	0.172	8E-9		0.00822569	[0.0054-0.011] unit increase	NR [9732723] (imputed)	N
929	chr7	45166640	45166641	rs1078793	30014611	Weiss RB	2018-07-16	Ann Neurol	Long-range genomic regulators of THBS1 and LTBP4 modify disease severity in Duchenne muscular dystrophy.	Age at loss of ambulation in Duchenne muscular dystrophy	243 European ancestry cases, 10 cases	NA	7p13	NR	rs1078793-?	NR	1E-6				Illumina [1735619]	N
930	chr7	45235119	45235120	rs1294908	25246029	DiStefano JK	2014-09-23	Acta Diabetol	Genome-wide analysis of hepatic lipid content in extreme obesity.	Hepatic lipid content in extreme obesity	1,868 European ancestry cases	NA	7p13	RAMP3	rs1294908-?		7E-7	(Hepatic lipid content grade 1 versus 0)			Illumina [605718]	N
930	chr7	45268636	45268637	rs757678	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	7p13	NR	rs757678-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
930	chr7	45341786	45341787	rs1819033	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	7p13	NR	rs1819033-?	NR	2E-12				Affymetrix [NR]	N
931	chr7	45400894	45400895	rs1852612	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	QRS duration in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	7p13	NR	rs1852612-?	NR	8E-6				Affymetrix [5486770] (imputed)	N
932	chr7	45498399	45498400	rs885244	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (unclassified genus belonging to the order Clostridiales)	1,068 Japanese ancestry individuals	NA	7p12.3	intergenic	rs885244-C	0.19	9E-6		0.172	[0.096-0.248] unit decrease	Illumina [6380737] (imputed)	N
932	chr7	45564838	45564839	rs1404912	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Dorea)	1,068 Japanese ancestry individuals	NA	7p12.3	AC073325.1	rs1404912-G	0.05	2E-6	(female)	0.0964	[0.057-0.136] unit decrease	Illumina [6380737] (imputed)	N
933	chr7	45632621	45632622	rs17567824	30014611	Weiss RB	2018-07-16	Ann Neurol	Long-range genomic regulators of THBS1 and LTBP4 modify disease severity in Duchenne muscular dystrophy.	Age at loss of ambulation in Duchenne muscular dystrophy	243 European ancestry cases, 10 cases	NA	7p12.3	NR	rs17567824-?	NR	4E-6				Illumina [1735619]	N
933	chr7	45632621	45632622	rs17567824	30014611	Weiss RB	2018-07-16	Ann Neurol	Long-range genomic regulators of THBS1 and LTBP4 modify disease severity in Duchenne muscular dystrophy.	Age at loss of ambulation in Duchenne muscular dystrophy	243 European ancestry cases, 10 cases	NA	7p12.3	NR	rs17567824-?	NR	1E-6	(EA)			Illumina [1735619]	N
933	chr7	45646851	45646852	rs1521470	29121268	Amare AT	2017-11-09	JAMA Psychiatry	Association of Polygenic Score for Schizophrenia and HLA Antigen and Inflammation Genes With Response to Lithium in Bipolar Affective Disorder: A Genome-Wide Association Study.	Bipolar disorder lithium response (continuous) or schizophrenia	2,366 European ancestry lithium treated bipolar disorder cases, 220 Asian ancestry lithium treated bipolar disorder cases, 36,989 schizophrenia cases, controls (see Ripke et al 2014 PMID:25056061)	NA	7p12.3	ADCY1	rs1521470-A		3E-8				NR [NR] (imputed)	N
933	chr7	45646851	45646852	rs1521470	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	7p12.3	NR	rs1521470-A	NR	9E-6		1.07	[NR]	Illumina [7158791] (imputed)	N
933	chr7	45663779	45663780	rs66888611	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	7p12.3	NR	rs66888611-G	NR	1E-15		0.0199	[0.015-0.025] unit increase	Affymetrix [9000000] (imputed)	N
933	chr7	45695330	45695331	rs2461130	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	7p12.3	NR	rs2461130-?	NR	8E-6		648.7979	NR unit increase	Illumina [2379855]	N
933	chr7	45710098	45710099	rs79209880	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	7p12.3	ADCY1, SEPT7P2, IGFBP1, IGFBP3	rs79209880-T	NR	1E-7	(sleep efficiency, weekdays)	8.057	[5.09-11.02] unit decrease	Affymetrix [7141204] (imputed)	N
934	chr7	45764527	45764528	rs6958337	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	7p12.3	NR	rs6958337-C	NR	3E-15		0.0345	[0.026-0.043] unit increase	Affymetrix [9000000] (imputed)	N
934	chr7	45838627	45838628	rs57310213	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	7p12.3	NR	rs57310213-C	NR	4E-23		0.033	[0.027-0.039] unit decrease	Affymetrix [9000000] (imputed)	N
934	chr7	45852553	45852554	rs188298323	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Elusimicrobiota abundance in stool	5,959 Finnish ancestry individuals	NA	7p12.3		rs188298323-T	0.0125148	9E-10		0.0605308	[0.041-0.08] unit increase	Illumina [7980478] (imputed)	N
934	chr7	45852553	45852554	rs188298323	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Elusimicrobiaceae abundance in stool	5,959 Finnish ancestry individuals	NA	7p12.3		rs188298323-T	0.0125148	6E-11		0.175065	[0.12-0.23] unit increase	Illumina [7980478] (imputed)	N
934	chr7	45852553	45852554	rs188298323	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Elusimicrobia abundance in stool	5,959 Finnish ancestry individuals	NA	7p12.3		rs188298323-T	0.0125148	1E-8		0.0873557	[0.057-0.117] unit increase	Illumina [7980478] (imputed)	N
934	chr7	45864726	45864727	rs116927879	26503763	Song J	2015-10-27	Mol Psychiatry	Genome-wide association study identifies SESTD1 as a novel risk gene for lithium-responsive bipolar disorder.	Subjective response to lithium treatment in bipolar disorder	1,639 European ancestry responder cases, 1,059 European ancestry non-responder cases	NA	7p12.3	SEPT7P2, IGFBP3, IGFBP1, ADCY1	rs116927879-G	0.85	5E-7		1.53	[NR]	NR [> 8000000] (imputed)	N
935	chr7	45895603	45895604	rs10265133	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	7p12.3	IGFBP1, IGFBP3	rs10265133-G	0.857555	2E-9		0.027396	[0.018-0.036] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
935	chr7	45899249	45899250	rs75764599	28067912	Lee JC	2017-01-09	Nat Genet	Genome-wide association study identifies distinct genetic contributions to prognosis and susceptibility in Crohn's disease.	Poor prognosis in Crohn's disease	1,762 Northern European ancestry poor prognosis cases, 972 Northern European ancestry good prognosis controls.		7p12.3	IGFBP1, IGFBP3	rs75764599-A	0.01	4E-8		3.02	[2.04-4.49]	Affymetrix, Illumina [at least 7000000] (imputed)	N
935	chr7	45903806	45903807	rs6956740	21156761	Padyukov L	2010-12-14	Ann Rheum Dis	A genome-wide association study suggests contrasting associations in ACPA-positive versus ACPA-negative rheumatoid arthritis.	Rheumatoid arthritis	1,147 European ancestry ACPA positive RA cases, 774 European ancestry ACPA negative RA cases, 1,079 European ancestry controls	887 European ancestry ACPA positive RA cases, 1,218 European ancestry controls	7p12.3	IGFBP1	rs6956740-?	NR	5E-7	(ACPA-negative RA vs controls)	3.49	[2.08-5.85]	Illumina [1723056] (imputed)	N
935	chr7	45932562	45932563	rs117054298	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	20,917 European ancestry cases, 440,906 European ancestry controls, 14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	7p12.3		rs117054298-T	NR	3E-8		0.5953	[0.39-0.8] unit increase	Affymetrix, Illumina [25841367] (imputed)	N
935	chr7	45954464	45954465	rs145188037	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	7p12.3	IGFBP3	rs145188037-A	0.012	1E-19	(Insulin-like growth factor-binding protein 3, IGFBP3.2571.12.3)	1.03	[0.81-1.25] unit increase	Affymetrix [10572788] (imputed)	N
935	chr7	45954518	45954519	rs756951692	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Insulin-like growth factor 1 levels	435,516 European ancestry individuals	NA	7p12.3		rs756951692-?	NR	4E-11		0.518586	[0.36-0.68] unit decrease	NR [9800000] (imputed)	N
935	chr7	45954539	45954540	rs17847676	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	7p12.3	IGFBP3	rs17847676-?	NR	7E-15		0.15140004	[0.11-0.19] unit decrease	Illumina [27896057] (imputed)	N
935	chr7	45955028	45955029	rs3110697	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	7p12.3		rs3110697-G	NR	2E-8		0.029	[0.019-0.039] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
935	chr7	45955028	45955029	rs3110697	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	7p12.3	NR	rs3110697-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
935	chr7	45955028	45955029	rs3110697	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	7p12.3		rs3110697-?	NR	2E-9				NR [~ 8900000] (imputed)	N
935	chr7	45956184	45956185	rs147700247	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Insulin-like growth factor 1 levels	435,516 European ancestry individuals	NA	7p12.3		rs147700247-?	NR	7E-21		1.03519	[0.81-1.26] unit decrease	NR [9800000] (imputed)	N
935	chr7	45956968	45956969	rs9282734	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	7p12.3	NR	rs9282734-G	NR	2E-23		0.1773	[0.14-0.21] unit increase	Affymetrix [9000000] (imputed)	N
935	chr7	45959916	45959917	rs2854747	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	7p12.3	IGFBP3	rs2854747-G	NR	2E-9		0.017457	[0.012-0.023] unit increase	Affymetrix [321114] (imputed)	N
935	chr7	45959916	45959917	rs2854747	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	7p12.3	NR	rs2854747-A	0.585867	2E-9		0.0590911	[0.04-0.078] unit increase	Affymetrix [21375087] (imputed)	N
935	chr7	45959916	45959917	rs2854747	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	7p12.3	NR	rs2854747-?	NR	4E-15				Affymetrix [~ 8270000] (imputed)	N
935	chr7	45960644	45960645	rs2854746	35264221	Caron B	2022-03-09	Genome Med	Integrative genetic and immune cell analysis of plasma proteins in healthy donors identifies novel associations involving primary immune deficiency genes.	IGFBP 3 plasma levels	400 French ancestry individuals	NA	7p12.3		rs2854746-G	NR	1E-7		0.095	[0.06-0.13] ng/mL decrease	Illumina [5201092] (imputed)	N
935	chr7	45960644	45960645	rs2854746	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IGFALS	5,367 Icelandic ancestry individuals	NA	7p12.3		rs2854746-C	0.3284	2E-189		0.534425	[0.5-0.57] unit increase	Illumina [7506463] (imputed)	N
935	chr7	45960644	45960645	rs2854746	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	7p12.3		rs2854746-C	0.4	3E-13		7.31	z score increase	Affymetrix [9061022] (imputed)	N
935	chr7	45960644	45960645	rs2854746	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Diastolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	7p12.3	IGFBP3	rs2854746-C	0.4472	1E-19		0.228	[0.18-0.28] mmHg increase	Affymetrix [NR] (imputed)	N
935	chr7	45963444	45963445	rs62457627	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	7p12.3	NR	rs62457627-?	NR	6E-10				Affymetrix [~ 8270000] (imputed)	N
935	chr7	45963444	45963445	rs62457627	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7p12.3		rs62457627-?	NR	5E-19				NR [~ 8900000] (imputed)	N
935	chr7	45970036	45970037	rs1117457	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	7p12.3	NR	rs1117457-A	0.4541	1E-9				NR [9056863] (imputed)	N
935	chr7	45974664	45974665	rs2453849	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	7p12.3	NR	rs2453849-G	0.756875	3E-21	(IGFALS, 6605_17_3)	0.26373434	[0.21-0.32] unit increase	Illumina [> 1000000] (imputed)	N
935	chr7	45980750	45980751	rs2965072	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	7p12.3	TBC1D5	rs2965072-?		2E-10				NR [7428630] (imputed)	N
935	chr7	45982459	45982460	rs2462686	23377640	GENDEP Investigators	2013-02-01	Am J Psychiatry	Common genetic variation and antidepressant efficacy in major depressive disorder: a meta-analysis of three genome-wide pharmacogenetic studies.	Major depressive disorder	Up to 2,256 European ancestry cases	NA	7p12.3	IGFBP1, IGFBP3	rs2462686-C	0.3509068	9E-6	(partial response - SSRI treated - 2 weeks)	1.4872	[1.31-1.66]	Affymetrix, Illumina [1200000] (imputed)	N
935	chr7	45984819	45984820	rs2949833	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	7p12.3	Intergenic	rs2949833-T	0.2930514	3E-22	(EA, Insulin-like growth factor-binding protein 3)	0.428	[0.34-0.51] unit increase	Affymetrix [509946]	N
935	chr7	45984819	45984820	rs2949833	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	7p12.3	Intergenic	rs2949833-T	0.2930514	3E-12	(EA, Insulin-like growth factor I)	0.3203	[0.23-0.41] unit increase	Affymetrix [509946]	N
935	chr7	45987429	45987430	rs199696982	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	7p12.3	AC073115.6	rs199696982-C	0.462	1E-14	(Nutritionally-regulated adipose and cardiac enriched protein homolog, NRAC.13464.8.3)	0.19	[0.15-0.23] unit increase	Affymetrix [10572788] (imputed)	N
935	chr7	45993667	45993668	rs1723953	28498854	Liang J	2017-05-12	PLoS Genet	Single-trait and multi-trait genome-wide association analyses identify novel loci for blood pressure in African-ancestry populations.	Pulse pressure	Up to 31,155 African individuals	Up to 4,187 African individuals, up to 14,016 Korean ancestry individuals, up to 23,914 European ancestry individuals, up to 12,278 Hispanic individuals	7p12.3	NR	rs1723953-?	NR	1E-6		1.9449	[1.17-2.72] unit increase	Affymetrix, Illumina [at least 30072738] (imputed)	N
935	chr7	45994377	45994378	rs2949837	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	7p12.3	NR	rs2949837-T	0.30076	5E-15		0.0564476	[0.042-0.071] unit increase	Affymetrix [17914406] (imputed)	N
935	chr7	45994377	45994378	rs2949837	25865494	Chan Y	2015-04-09	Am J Hum Genet	Genome-wide Analysis of Body Proportion Classifies Height-Associated Variants by Mechanism of Action and Implicates Genes Important for Skeletal Development.	Sitting height ratio	3,545 African American individuals, 12,965 European ancestry women, 8,625 European ancestry men	NA	7p12.3	NR	rs2949837-A	0.689	3E-7	(EA)	0.056	[0.034-0.078] unit decrease	Affymetrix, Illumina [up to 10250422] (imputed)	N
935	chr7	45996424	45996425	rs148562589	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IGFBP3	5,363 Icelandic ancestry individuals	NA	7p12.3		rs148562589-C	0.01883	1E-21		0.606014	[0.48-0.73] unit increase	Illumina [7506463] (imputed)	N
936	chr7	46006322	46006323	rs1543270	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	7p12.3		rs1543270-T	NR	8E-15		0.0151	[0.011-0.019] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
936	chr7	46006654	46006655	rs73692310	26888256	Hernandez W	2016-02-17	Blood	Novel genetic predictors of venous thromboembolism risk in African Americans.	Venous thromboembolism	146 African American cases, 432 African American controls	94 African American cases, 65 African American controls	7p12.3	IGFBP3	rs73692310-T	0.05	2E-8		3.04	[2.0-4.7]	Illumina [10690342] (imputed)	N
936	chr7	46008109	46008110	rs11977526	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	7p12.3	AC073115.6	rs11977526-A	NR	1E-9		0.0176577	[0.012-0.023] unit decrease	Affymetrix [321114] (imputed)	N
936	chr7	46008109	46008110	rs11977526	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Pulse pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 Japanese ancestry individuals	7p12.3	IGFBP1, IGFBP3	rs11977526-A	0.7802	5E-9	(Japanese)	0.3649	[0.24-0.49] unit decrease	Illumina [6200000] (imputed)	N
936	chr7	46008109	46008110	rs11977526	28498854	Liang J	2017-05-12	PLoS Genet	Single-trait and multi-trait genome-wide association analyses identify novel loci for blood pressure in African-ancestry populations.	Pulse pressure	Up to 31,155 African individuals	Up to 4,187 African individuals, up to 14,016 Korean ancestry individuals, up to 23,914 European ancestry individuals, up to 12,278 Hispanic individuals	7p12.3	IGFBP3	rs11977526-A	NR	9E-7		0.359	[0.22-0.50] unit decrease	Affymetrix, Illumina [at least 30072738] (imputed)	N
936	chr7	46008109	46008110	rs11977526	28498854	Liang J	2017-05-12	PLoS Genet	Single-trait and multi-trait genome-wide association analyses identify novel loci for blood pressure in African-ancestry populations.	Diastolic blood pressure	Up to 31,155 African individuals	Up to 4,187 African individuals, up to 14,016 Korean ancestry individuals, up to 23,914 European ancestry individuals, up to 12,278 Hispanic individuals	7p12.3	IGFBP3	rs11977526-A	NR	5E-6		0.2829	[0.16-0.40] unit increase	Affymetrix, Illumina [at least 30072738] (imputed)	N
936	chr7	46008109	46008110	rs11977526	28498854	Liang J	2017-05-12	PLoS Genet	Single-trait and multi-trait genome-wide association analyses identify novel loci for blood pressure in African-ancestry populations.	Blood pressure traits (multi-trait analysis)	Up to 31,155 African individuals	Up to 4,187 African individuals, up to 14,016 Korean ancestry individuals, up to 23,914 European ancestry individuals, up to 12,278 Hispanic individuals	7p12.3	IGFBP3	rs11977526-A	NR	7E-16	(Het)			Affymetrix, Illumina [at least 30072738] (imputed)	N
936	chr7	46008109	46008110	rs11977526	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	7p12.3	IGFBP3, TNS3	rs11977526-G		3E-10		0.248	unit increase	Affymetrix [at least 2696785] (imputed)	N
936	chr7	46008109	46008110	rs11977526	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	7p12.3	IGFBP3, TNS3	rs11977526-G		8E-17	(EA)	0.346	unit increase	Affymetrix [at least 2696785] (imputed)	N
936	chr7	46008109	46008110	rs11977526	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	7p12.3	IGFBP3, TNS3	rs11977526-G		1E-21		0.36	unit increase	Affymetrix [at least 2696785] (imputed)	N
936	chr7	46008109	46008110	rs11977526	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	7p12.3	IGFBP3, TNS3	rs11977526-G		9E-50		0.389	unit increase	Affymetrix [at least 2696785] (imputed)	N
936	chr7	46008109	46008110	rs11977526	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	7p12.3	IGFBP3, TNS3	rs11977526-G		9E-7	(EA)	0.198	unit decrease	Affymetrix [at least 2696785] (imputed)	N
936	chr7	46008109	46008110	rs11977526	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	7p12.3	IGFBP3, TNS3	rs11977526-G		4E-12		0.166	unit decrease	Affymetrix [at least 2696785] (imputed)	N
936	chr7	46008109	46008110	rs11977526	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Systolic blood pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	154,543 European ancestry individuals, 26,183 South Asian ancestry individuals	7p12.3	IGFBP3	rs11977526-A	0.397	3E-11		0.3	[0.2-0.4] unit decrease	Illumina [247039]	N
936	chr7	46008109	46008110	rs11977526	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Pulse pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	154,543 European ancestry individuals, 26,183 South Asian ancestry individuals	7p12.3	IGFBP3	rs11977526-A	0.397	3E-29		0.36	[0.3-0.42] unit decrease	Illumina [247039]	N
936	chr7	46008109	46008110	rs11977526	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Systolic blood pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	7p12.3	IGFBP1, IGFBP3	rs11977526-A	0.3797	4E-8		0.0194	unit decrease	Illumina [242296]	N
936	chr7	46008109	46008110	rs11977526	21216879	Kaplan RC	2011-01-07	Hum Mol Genet	A genome-wide association study identifies novel loci associated with circulating IGF-I and IGFBP-3.	Insulin-like growth factors	10,280 European ancestry individuals	NA	7p12.3	IGFBP3	rs11977526-A	0.41	3E-101	(IGFBP-3)			Affymetrix, Illumina [~ 2500000] (imputed)	N
936	chr7	46010099	46010100	rs10260816	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	7p12.3		rs10260816-G	NR	6E-64		0.032	[0.028-0.036] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
936	chr7	46010099	46010100	rs10260816	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	145,445 East Asian ancestry individuals	NA	7p12.3		rs10260816-G	0.758513	5E-11		0.0260101	[0.018-0.034] unit decrease	Illumina [13477769] (imputed)	N
936	chr7	46010099	46010100	rs10260816	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	7p12.3		rs10260816-G	NR	4E-14		0.0156	[0.011-0.02] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
936	chr7	46010099	46010100	rs10260816	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	7p12.3	AC073115.2	rs10260816-C	0.5606	4E-13		0.0138	[0.01-0.018] unit decrease	Affymetrix [18391927] (imputed)	N
936	chr7	46010099	46010100	rs10260816	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	7p12.3		rs10260816-?	NR	2E-19				NR [~ 8900000] (imputed)	N
936	chr7	46010099	46010100	rs10260816	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	7p12.3	intergenic	rs10260816-G	0.5691	2E-26		0.3505	[0.29-0.42] mmHg increase	Affymetrix [NR] (imputed)	N
936	chr7	46010099	46010100	rs10260816	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	7p12.3	intergenic	rs10260816-G	0.5689	2E-78		0.4633	[0.41-0.51] mmHg increase	Affymetrix [NR] (imputed)	N
936	chr7	46010099	46010100	rs10260816	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Pulse pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 Japanese ancestry individuals	7p12.3	IGFBP3	rs10260816-C	0.2397	6E-9	(Japanese)	0.3535	[0.23-0.47] unit increase	Illumina [6200000] (imputed)	N
936	chr7	46010099	46010100	rs10260816	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Pulse pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	7p12.3	IGFBP3	rs10260816-G	0.429	5E-10	(EA, initial)	0.298	[0.2-0.39] unit decrease	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
936	chr7	46010099	46010100	rs10260816	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	7p12.3	IGFBP3, TNS3	rs10260816-C		3E-9		0.23	unit increase	Affymetrix [at least 2696785] (imputed)	N
936	chr7	46010099	46010100	rs10260816	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	7p12.3	IGFBP3, TNS3	rs10260816-C		9E-16	(EA)	0.328	unit increase	Affymetrix [at least 2696785] (imputed)	N
936	chr7	46010099	46010100	rs10260816	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	7p12.3	IGFBP3, TNS3	rs10260816-C		2E-20		0.344	unit increase	Affymetrix [at least 2696785] (imputed)	N
936	chr7	46010099	46010100	rs10260816	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	7p12.3	IGFBP3, TNS3	rs10260816-C		2E-49		0.382	unit increase	Affymetrix [at least 2696785] (imputed)	N
936	chr7	46010099	46010100	rs10260816	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	7p12.3	IGFBP3, TNS3	rs10260816-C		4E-6		0.167	unit decrease	Affymetrix [at least 2696785] (imputed)	N
936	chr7	46010099	46010100	rs10260816	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	7p12.3	IGFBP3, TNS3	rs10260816-C		2E-7	(EA)	0.208	unit decrease	Affymetrix [at least 2696785] (imputed)	N
936	chr7	46010099	46010100	rs10260816	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	7p12.3	IGFBP3, TNS3	rs10260816-C		6E-14		0.178	unit decrease	Affymetrix [at least 2696785] (imputed)	N
936	chr7	46010099	46010100	rs10260816	26390057	Kato N	2015-09-21	Nat Genet	Trans-ancestry genome-wide association study identifies 12 genetic loci influencing blood pressure and implicates a role for DNA methylation.	Pulse pressure	31,516 East Asian ancestry individuals,  35,352 European ancestry individuals, 33,126 South Asian ancestry individuals	87,205 individuals, 48,268 East Asian ancestry individuals, 68,456 European ancestry individuals and 16,328 South Asian ancestry individuals	7p12.3	IGFBP3	rs10260816-C	0.605855210263958	2E-14		0.31454498	[0.23-0.39] mmHg increase	Affymetrix, Illumina, Perlegen [~ 2100000] (imputed)	N
936	chr7	46010713	46010714	rs788711	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Pulse pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 Japanese ancestry individuals	7p12.3	NR	rs788711-T	0.2126	3E-10	(East Asian)	0.3338	[0.23-0.44] unit increase	Illumina [6200000] (imputed)	N
936	chr7	46011553	46011554	rs788709	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	7p12.3	NR	rs788709-C	NR	2E-13		0.032	[0.023-0.041] unit decrease	Affymetrix [9000000] (imputed)	N
936	chr7	46016661	46016662	rs1722141	25865494	Chan Y	2015-04-09	Am J Hum Genet	Genome-wide Analysis of Body Proportion Classifies Height-Associated Variants by Mechanism of Action and Implicates Genes Important for Skeletal Development.	Sitting height ratio	3,545 African American individuals, 12,965 European ancestry women, 8,625 European ancestry men	NA	7p12.3	IGFBP3	rs1722141-A	0.222	3E-8	(EA)	0.067	[0.043-0.091] unit decrease	Affymetrix, Illumina [up to 10250422] (imputed)	N
936	chr7	46028166	46028167	rs1880318	31598132	Donati G	2019-06-30	Mind Brain Educ	Genome-Wide Association Study of Latent Cognitive Measures in Adolescence: Genetic Overlap With Intelligence and Education.	Cognitive performance (processing speed)	4,611 European ancestry adolescents	NA	7p12.3	FTLP15	rs1880318-?	NR	2E-6		0.122	[0.063-0.181] unit decrease	Illumina [6319684] (imputed)	N
936	chr7	46035181	46035182	rs788731	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	7p12.3	IGFBP3	rs788731-G	NR	2E-6		0.0907871	[0.053-0.128] unit decrease	Illumina [at least 950000] (imputed)	N
936	chr7	46048279	46048280	rs17172621	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	7p12.3	NR	rs17172621-A	NR	3E-14		0.0638	[0.047-0.08] unit increase	Affymetrix [9000000] (imputed)	N
936	chr7	46048279	46048280	rs17172621	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	7p12.3	IGFBP3	rs17172621-G	0.98203125	2E-9	(IGFBP3, 2571_12_3)	0.51535237	[0.35-0.68] unit decrease	Illumina [> 1000000] (imputed)	N
936	chr7	46061375	46061376	rs1722136	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	7p12.3	NR	rs1722136-?	NR	7E-11				Affymetrix [~ 8270000] (imputed)	N
936	chr7	46071677	46071677	rs11455214	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	7p12.3		rs11455214-AT	NR	3E-45		0.0194	[0.017-0.022] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
936	chr7	46073274	46073275	rs1540825	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	7p12.3		rs1540825-C	0.330471	2E-38		0.0277096	[0.024-0.032] unit decrease	Illumina [13479295] (imputed)	N
936	chr7	46073274	46073275	rs1540825	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	7p12.3	IGFBP3, TNS3	rs1540825-?	NR	9E-39		0.039418966	[0.033-0.045] unit decrease	Illumina [27896057] (imputed)	N
936	chr7	46076648	46076649	rs11761054	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (late vs. average onset facial hair)	26,066 European ancestry late onset individuals, 161,175 European ancestry average onset individuals	NA	7p12.3		rs11761054-C	NR	3E-10		0.00784768	[0.0054-0.0103] years decrease	NR [7400000] (imputed)	N
936	chr7	46076648	46076649	rs11761054	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (early vs. average onset facial hair)	13,226 European ancestry early onset individuals, 161,175 European ancestry average onset individuals	NA	7p12.3		rs11761054-C	NR	2E-10		0.00642889	[0.0045-0.0084] years increase	NR [7400000] (imputed)	N
936	chr7	46076648	46076649	rs11761054	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (age at voice breaking MTAG)	205,354 European ancestry individuals	NA	7p12.3		rs11761054-C	NR	2E-8		0.019969516	[0.013-0.027] years decrease	NR [7400000] (imputed)	N
936	chr7	46094088	46094089	rs80077929	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	7p12.3	MYO1G, SNHG15, CCM2, TBRG4	rs80077929-T	0.1107	6E-6		1.07	[1.04-1.10]	Affymetrix, Illumina [16900397] (imputed)	N
936	chr7	46094088	46094089	rs80077929	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	7p12.3	IGFBP3	rs80077929-T	0.11	2E-15		1.11	[1.1-1.13]	Illumina [at least 560000] (imputed)	N
936	chr7	46094088	46094089	rs80077929	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	7p12.3	IGFBP3	rs80077929-?	NR	2E-15		1.111	[1.083-1.140]	Illumina [13757430] (imputed)	N
936	chr7	46102644	46102645	rs77163128	34593835	Takahashi Y	2021-09-30	Sci Rep	A genome-wide association study identifies a novel candidate locus at the DLGAP1 gene with susceptibility to resistant hypertension in the Japanese population.	Resistant hypertension	2,705 Japanese ancestry cases, 21,296 Japanese ancestry controls	NA	7p12.3		rs77163128-T	0.257	2E-6		1.16	[1.09-1.23]	Illumina [7199488] (imputed)	N
936	chr7	46124927	46124928	rs73107844	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	7p12.3	NR	rs73107844-?	NR	9E-6		0.0541	[0.03-0.078] unit increase	Illumina [at least 560000] (imputed)	N
936	chr7	46128108	46128109	rs1722133	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	7p12.3	NR	rs1722133-T	0.586514	3E-10		0.0432598	[0.03-0.057] unit increase	Affymetrix [17914406] (imputed)	N
936	chr7	46128108	46128109	rs1722133	25865494	Chan Y	2015-04-09	Am J Hum Genet	Genome-wide Analysis of Body Proportion Classifies Height-Associated Variants by Mechanism of Action and Implicates Genes Important for Skeletal Development.	Sitting height ratio	3,545 African American individuals, 12,965 European ancestry women, 8,625 European ancestry men	NA	7p12.3	NR	rs1722133-T	0.587	4E-7	(EA)	0.05	[0.03-0.07] unit increase	Affymetrix, Illumina [up to 10250422] (imputed)	N
937	chr7	46170581	46170582	rs12539647	34834492	Espuela-Ortiz A	2021-11-03	J Pers Med	Role of Sex on the Genetic Susceptibility to Childhood Asthma in Latinos and African Americans.	Childhood asthma x sex interaction	3,371 African ancestry, European ancestry, Native American ancestry cases, 2,650 African ancestry, European ancestry, Native American ancestry controls	NA	7p12.3		rs12539647-C	NR	2E-6		0.7	[0.6-0.81]	Affymetrix [6680224] (imputed)	N
937	chr7	46171682	46171683	rs6978655	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	7p12.3	NR	rs6978655-?	NR	9E-10				Affymetrix [~ 8270000] (imputed)	N
937	chr7	46171682	46171683	rs6978655	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	7p12.3	IGFBP3, TNS3	rs6978655-?	NR	2E-9		0.022243941	[0.015-0.029] unit increase	Illumina [27896057] (imputed)	N
937	chr7	46171883	46171884	rs6944635	31393916	Andaleon A	2019-08-08	PLoS One	Genetically regulated gene expression underlies lipid traits in Hispanic cohorts.	Total cholesterol levels	11,103 Hispanic or Latin American ancestry individuals	NA	7p12.3	NR	rs6944635-?	NR	1E-6		0.068	[0.041-0.095] unit increase	Illumina [1770809] (imputed)	N
937	chr7	46171883	46171884	rs6944635	31393916	Andaleon A	2019-08-08	PLoS One	Genetically regulated gene expression underlies lipid traits in Hispanic cohorts.	Low density lipoprotein cholesterol levels	11,103 Hispanic or Latin American ancestry individuals	NA	7p12.3	NR	rs6944635-?	NR	3E-6		0.07	[0.041-0.099] unit increase	Illumina [1770809] (imputed)	N
937	chr7	46201354	46201355	rs1007358	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7p12.3		rs1007358-?	NR	1E-42				NR [~ 8900000] (imputed)	N
937	chr7	46201354	46201355	rs1007358	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	7p12.3	IGFBP3	rs1007358-A	0.773	9E-10		0.021	[0.013-0.029] unit decrease	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
937	chr7	46214252	46214253	rs17172647	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cataracts	39,519 European ancestry cases, 452,358 European ancestry controls, 38,194 East Asian ancestry cases, 140,532 East Asian ancestry controls	NA	7p12.3		rs17172647-G	NR	3E-22		0.0646	[0.051-0.078] unit increase	Affymetrix, Illumina [25845331] (imputed)	N
937	chr7	46214252	46214253	rs17172647	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	38,996 female cases, 283,185 female controls, 28,848 male cases, 234,414 male controls	211,030 female cases, 1,623,785 female controls, 136,179 male cases, 1,263,461 male controls	7p12.3	IGFBP3, TNS3	rs17172647-G	NR	6E-36	(female)	1.0643	[1.05-1.07]	Affymetrix [9869154] (imputed)	N
937	chr7	46214252	46214253	rs17172647	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	38,996 female cases, 283,185 female controls, 28,848 male cases, 234,414 male controls	211,030 female cases, 1,623,785 female controls, 136,179 male cases, 1,263,461 male controls	7p12.3	IGFBP3, TNS3	rs17172647-G	NR	3E-43	(male)	1.0839	[1.07-1.1]	Affymetrix [9869154] (imputed)	N
937	chr7	46214252	46214253	rs17172647	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	28,092 non-Hispanic White ancestry cases, 50,487 non-Hispanic White ancestry controls, 31,852 European ancestry cases, 428,084 European ancestry controls	NA	7p12.3	NR	rs17172647-G	NR	7E-30		1.0933		Affymetrix [9869154] (imputed)	N
937	chr7	46214252	46214253	rs17172647	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	28,092 non-Hispanic White ancestry cases, 50,487 non-Hispanic White ancestry controls, 2,233 East Asian ancestry cases, 7,023 East Asian ancestry controls, 2,149 Hispanic/Latino cases, 6,620 Hispanic/Latino controls, 815 African American cases, 2,368 African American controls, 31,852 European ancestry cases, 428,084 European ancestry controls, 757 African ancestry cases, 7,897 African ancestry controls, 1,278 South Asian ancestry cases, 8,571 South Asian ancestry controls, 668 other admixed cases, 7,349 other admixed controls	313,278 European ancestry cases, 2,210,509 European ancestry controls, 7,715 African American cases, 120,390 African American controls, 3,934 East Asian ancestry cases, 104,766 East Asian ancestry controls, 21,408 Latino cases, 425,544 Latino controls, 874 South Asian ancestry cases, 26,037 South Asian ancestry controls	7p12.3	IGFBP3, TNS3	rs17172647-G	NR	5E-76		1.07	[1.06-1.08]	Affymetrix [9869154] (imputed)	N
937	chr7	46214252	46214253	rs17172647	31816047	Boutin TS	2019-12-09	Hum Mol Genet	Insights into the genetic basis of retinal detachment.	Cataracts (operation)	21,679 British ancestry cases, 387,283 British ancestry controls	NA	7p12.3	IGFBP3, LOC730338	rs17172647-?	0.265	7E-23		1.1150857	[1.09-1.14]	Affymetrix [NR] (imputed)	N
937	chr7	46235920	46235921	rs77285285	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Pulse pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	7p12.3	IGFBP1, IGFBP3	rs77285285-T	0.025282619	4E-7		0.5404	[0.33-0.75] unit increase	Affymetrix [~ 9800000] (imputed)	N
937	chr7	46242582	46242583	rs6964415	21658281	Aouizerat BE	2011-06-10	BMC Cardiovasc Disord	GWAS for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease.	Sudden cardiac arrest	88 European ancestry cases, 517 European ancestry controls	NA	7p12.3	intergenic	rs6964415-?	0.08	5E-7	(Recessive)	1.42	[1.24-1.63]	Affymetrix [319222]	N
937	chr7	46247036	46247037	rs112558930	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	7p12.3	NR	rs112558930-T	NR	4E-13		0.0582	[0.043-0.074] unit decrease	Affymetrix [9000000] (imputed)	N
937	chr7	46254554	46254555	rs7812048	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Pulse pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	7p12.3	IGFBP1, IGFBP3	rs7812048-C	0.761639173	2E-6		0.1719	[0.1-0.24] unit increase	Affymetrix [~ 9800000] (imputed)	N
937	chr7	46265135	46265136	rs1352084	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	7p12.3	NR	rs1352084-C	NR	2E-9		0.0162	[0.011-0.021] unit increase	Affymetrix [9000000] (imputed)	N
938	chr7	46269011	46269012	rs6965401	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	7p12.3	NR	rs6965401-G	0.93644	9E-10		0.0149991	[0.01-0.02] unit increase	Affymetrix [16582621] (imputed)	N
938	chr7	46269011	46269012	rs6965401	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	7p12.3	NR	rs6965401-G	0.93644	4E-7		0.0143837	[0.0094-0.0193] unit increase	Affymetrix [16582614] (imputed)	N
938	chr7	46275727	46275728	rs1486139	17903293	Benjamin EJ	2007-09-19	BMC Med Genet	Genome-wide association with select biomarker traits in the Framingham Heart Study.	Select biomarker traits	1,012 European ancestry individuals	NA	7p12.3	intergenic	rs1486139-?	NR	2E-6	(ANP6)			Affymetrix [70897]	N
938	chr7	46275881	46275882	rs7794048	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	7p12.3	NR	rs7794048-G	0.93696	5E-14		0.0131746	[0.0098-0.0166] unit increase	Affymetrix [16582909] (imputed)	N
938	chr7	46275881	46275882	rs7794048	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	7p12.3	NR	rs7794048-G	0.93696	8E-11		0.0126595	[0.0089-0.0164] unit increase	Affymetrix [16582965] (imputed)	N
938	chr7	46290591	46290592	rs76933732	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	7p12.3	NR	rs76933732-G	NR	3E-10		0.0205	[0.014-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
938	chr7	46298646	46298647	rs11983722	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	7p12.3	IGFBP3	rs11983722-A	0.937561	3E-9		0.031888	[0.021-0.042] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
938	chr7	46304420	46304421	rs78743535	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	7p12.3	NR	rs78743535-?	NR	6E-10				Affymetrix [~ 8270000] (imputed)	N
938	chr7	46311047	46311048	rs79875959	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7p12.3		rs79875959-?	NR	2E-21				NR [~ 8900000] (imputed)	N
938	chr7	46312988	46312989	rs71542184	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7p12.3		rs71542184-?	NR	2E-21				NR [~ 8900000] (imputed)	N
938	chr7	46314462	46314463	rs17172670	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	7p12.3	NR	rs17172670-?	NR	5E-6		7472.5522	NR unit decrease	Illumina [2379855]	N
938	chr7	46328424	46328425	rs117294144	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	7p12.3	NR	rs117294144-T	NR	8E-15		0.0654	[0.049-0.082] unit decrease	Affymetrix [9000000] (imputed)	N
938	chr7	46329629	46329630	rs78546112	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	7p12.3	NR	rs78546112-T	NR	3E-16		0.0412	[0.031-0.051] unit decrease	Affymetrix [9000000] (imputed)	N
938	chr7	46364171	46364172	rs13221259	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	7p12.3	IGFBP3, TNS3	rs13221259-?	NR	2E-7		0.015323641	[0.0096-0.0211] unit decrease	Illumina [27896057] (imputed)	N
938	chr7	46369328	46369329	rs74694663	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	7p12.3	NR	rs74694663-G	NR	1E-11		0.0546	[0.039-0.07] unit increase	Affymetrix [9000000] (imputed)	N
938	chr7	46378821	46378822	rs113818400	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		AC023669.2	rs113818400-?	NR	2E-8	(male)	2.88346	[NR] unit increase	Affymetrix [NR] (imputed)	N
938	chr7	46392566	46392567	rs17513961	22310353	Man M	2012-02-07	Pharmacogenomics J	Beyond single-marker analyses: mining whole genome scans for insights into treatment responses in severe sepsis.	Treatment response for severe sepsis	1,446 individuals	NA	7p12.3	LOC222052	rs17513961-?	NR	1E-7	(TT vs. not TT)			Illumina [856627]	N
938	chr7	46398910	46398911	rs17172691	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	7p12.3	NR	rs17172691-A	0.09	7E-9		0.0184	[0.012-0.025] unit increase	NR [NR]	N
939	chr7	46402268	46402269	rs7811653	25108383	Geller F	2014-08-10	Nat Genet	Genome-wide association analyses identify variants in developmental genes associated with hypospadias.	Hypospadias	1,006 European ancestry male child cases, 2,390 European ancestry male child controls, 3,096 European ancestry female child controls	1,972 European ancestry male child cases, 1,401 European ancestry male child controls, 405 European ancestry female child controls, 6 European ancestry child controls	7p12.3	IGFBP3	rs7811653-A	0.074	2E-14		1.57	[NR]	Illumina [8207076] (imputed)	N
939	chr7	46448517	46448518	rs17232687	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	7p12.3	IGFBP3	rs17232687-T	0.4956	7E-15		0.0183	[0.014-0.023] unit decrease	Affymetrix [19819130] (imputed)	N
939	chr7	46448517	46448518	rs17232687	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	7p12.3	IGFBP3	rs17232687-T	0.4956	1E-15		0.0187	[0.014-0.023] unit decrease	Affymetrix [19819130] (imputed)	N
939	chr7	46456877	46456878	rs13237750	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	7p12.3	NR	rs13237750-C	0.951761	2E-9		0.0162724	[0.011-0.022] unit increase	Affymetrix [16585854] (imputed)	N
939	chr7	46456877	46456878	rs13237750	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	7p12.3	NR	rs13237750-C	0.951761	9E-8		0.016801	[0.01-0.023] unit increase	Affymetrix [16585866] (imputed)	N
939	chr7	46484507	46484508	rs76457207	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	7p12.3	NR	rs76457207-?	NR	6E-9				Affymetrix [~ 8270000] (imputed)	N
939	chr7	46484507	46484508	rs76457207	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	7p12.3		rs76457207-?	NR	1E-9				NR [~ 8900000] (imputed)	N
939	chr7	46485962	46485963	rs6968518	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	7p12.3		rs6968518-?	NR	3E-13				NR [~ 8900000] (imputed)	N
939	chr7	46486581	46486582	rs140548781	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (processing speed) x major depressive disorder interaction (2df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	7p12.3		rs140548781-T	0.01	2E-9				NR [NR] (imputed)	N
939	chr7	46486581	46486582	rs140548781	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (processing speed) x major depressive disorder interaction (1df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	7p12.3		rs140548781-T	0.01	4E-8		0.62	[0.23-1.01] unit increase	NR [NR] (imputed)	N
939	chr7	46486581	46486582	rs140548781	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (executive function) x major depressive disorder interaction (2df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	7p12.3		rs140548781-T	0.01	2E-9				NR [NR] (imputed)	N
939	chr7	46486581	46486582	rs140548781	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (executive function) x major depressive disorder interaction (1df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	7p12.3		rs140548781-T	0.01	1E-6		1.83	[1.09-2.57] unit decrease	NR [NR] (imputed)	N
939	chr7	46500064	46500065	rs17172703	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	7p12.3	NR	rs17172703-G	NR	3E-11		0.0355	[0.025-0.046] unit increase	Affymetrix [9000000] (imputed)	N
939	chr7	46507655	46507656	rs13237426	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	7p12.3	intergenic	rs13237426-T	0.9381	1E-24		0.0386	[0.031-0.046] unit increase	Affymetrix [18391927] (imputed)	N
940	chr7	46531354	46531355	rs13222075	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	7p12.3	AC004869.2	rs13222075-C	NR	1E-8		0.0229186	[0.015-0.031] unit decrease	Affymetrix [323123] (imputed)	N
940	chr7	46532406	46532407	rs6463331	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	41,389 African ancestry individuals	11,364 African ancestry individuals, 253,288 European ancestry individuals	7p12.3	IGFBP3, TNS3	rs6463331-C	0.797	4E-9	(AA)	0.049	[0.033-0.065] unit increase	Affymetrix, Illumina [17972582] (imputed)	N
940	chr7	46532406	46532407	rs6463331	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	41,389 African ancestry individuals	11,364 African ancestry individuals, 253,288 European ancestry individuals	7p12.3	IGFBP3, TNS3	rs6463331-C		2E-6				Affymetrix, Illumina [17972582] (imputed)	N
940	chr7	46532406	46532407	rs6463331	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	25,369 African ancestry women	8,449 African ancestry women, up to 253,288 European ancestry women	7p12.3	IGFBP3, TNS3	rs6463331-C	0.796	1E-7	(AA)	0.054	[0.034-0.074] unit increase	Affymetrix, Illumina [19885954] (imputed)	N
940	chr7	46550526	46550527	rs13227393	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	7p12.3	intergenic	rs13227393-T	0.901	2E-11		0.2193	[0.16-0.28] mmHg decrease	Affymetrix [NR] (imputed)	N
940	chr7	46554357	46554358	rs71543920	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	7p12.3	AC011294.3	rs71543920-T	0.9402	4E-12		0.2572	[0.18-0.33] unit decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
940	chr7	46561544	46561545	rs62452705	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Episodic memory (pairs-matching)	331,679 British ancestry individuals	NA	7p12.3		rs62452705-?	NR	4E-8				NR [7857346] (imputed)	N
940	chr7	46563356	46563357	rs78035169	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	7p12.3	NR	rs78035169-T	NR	8E-19		0.0572	[0.044-0.07] unit decrease	Affymetrix [9000000] (imputed)	N
940	chr7	46569793	46569794	rs73119694	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	7p12.3	NR	rs73119694-T	NR	3E-9		0.0537	[0.036-0.072] unit decrease	Affymetrix [9000000] (imputed)	N
940	chr7	46572991	46572992	rs2057869	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	7p12.3	NR	rs2057869-A	0.29	2E-11		0.014	[0.0099-0.0181] unit increase	Affymetrix [2446094] (imputed)	N
940	chr7	46572991	46572992	rs2057869	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	7p12.3	NR	rs2057869-A	0.29	5E-8				Affymetrix [2446094] (imputed)	N
940	chr7	46577055	46577056	rs723149	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	7p12.3	intergenic	rs723149-A	0.4372	1E-47		0.0276	[0.024-0.031] unit increase	Affymetrix [18391927] (imputed)	N
940	chr7	46577055	46577056	rs723149	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7p12.3		rs723149-?	NR	2E-49				NR [~ 8900000] (imputed)	N
940	chr7	46592987	46592988	rs78640499	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	7p12.3	NR	rs78640499-T	NR	2E-10		0.026	[0.018-0.034] unit increase	Affymetrix [9000000] (imputed)	N
940	chr7	46602408	46602409	rs142711375	31006051	Kharazmi M	2019-04-20	Calcif Tissue Int	A Genome-Wide Association Study of Bisphosphonate-Associated Atypical Femoral Fracture.	Bisphosphonate-associated atypical femoral fracture	50 European ancestry cases, 1 Chilean ancestry case, 4,891 European ancestry controls	NA	7p12.3	intergenic	rs142711375-G	0.014	2E-6		6.503	[3.028-13.97]	Illumina [7585874] (imputed)	N
940	chr7	46603758	46603759	rs62452720	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	7p12.3	NR	rs62452720-C	0.321223	3E-10		0.0638493	[0.043-0.084] unit decrease	Affymetrix [21375087] (imputed)	N
940	chr7	46604820	46604821	rs17172718	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	7p12.3	NR	rs17172718-G	NR	3E-33		0.0438	[0.037-0.051] unit increase	Affymetrix [9000000] (imputed)	N
940	chr7	46616902	46616903	rs12540831	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	7p12.3	NR	rs12540831-T	NR	1E-13		0.04	[0.029-0.051] unit decrease	Affymetrix [9000000] (imputed)	N
940	chr7	46620144	46620145	rs7784776	30012220	Prins BP	2018-07-17	Genome Biol	Exome-chip meta-analysis identifies novel loci associated with cardiac conduction, including ADAMTS6.	QRS duration	up to 77,898 European ancestry individuals, up to 7,695 African American individuals	up to 111,874 European ancestry individuals	7p12.3	intergenic	rs7784776-G	0.383973	2E-18		0.292445	[0.23-0.36] ms increase	Illumina [162199]	N
940	chr7	46620144	46620145	rs7784776	30012220	Prins BP	2018-07-17	Genome Biol	Exome-chip meta-analysis identifies novel loci associated with cardiac conduction, including ADAMTS6.	QRS duration	77,898 European ancestry individuals	NA	7p12.3	intergenic	rs7784776-G	0.396148227281299	1E-8		0.2643396	[0.17-0.36] ms increase	Illumina [213295]	N
940	chr7	46620144	46620145	rs7784776	27659466	van der Harst P	2016-09-27	J Am Coll Cardiol	52 Genetic Loci Influencing Myocardial Mass.	QRS duration	59,565 European ancestry individuals, 690 Orcadian (founder/genetic isolate) individuals	13,263 European ancestry individuals, 3,603 African American individuals, 4,619 Indian ancestry individuals	7p12.3	NR	rs7784776-?	NR	5E-7	(EA)			Affymetrix, Illumina, Perlegen [at least 2766983] (imputed)	N
940	chr7	46620144	46620145	rs7784776	27577874	Evans DS	2016-08-29	Hum Mol Genet	Fine-mapping, novel loci identification, and SNP association transferability in a genome-wide association study of QRS duration in African Americans.	QRS duration	up to 13,031 African American individuals, 40,407 European ancestry individuals	NA	7p12.3	IGFBP3	rs7784776-A	0.57	1E-8	(European)	0.39	[NR] millisecond decrease	Affymetrix, Illumina [2955816] (imputed)	N
940	chr7	46620144	46620145	rs7784776	27577874	Evans DS	2016-08-29	Hum Mol Genet	Fine-mapping, novel loci identification, and SNP association transferability in a genome-wide association study of QRS duration in African Americans.	QRS duration	up to 13,031 African American individuals, 40,407 European ancestry individuals	NA	7p12.3	IGFBP3	rs7784776-A		2E-9		0.36	[0.24-0.48] millisecond decrease	Affymetrix, Illumina [2955816] (imputed)	N
940	chr7	46620144	46620145	rs7784776	21076409	Sotoodehnia N	2010-11-14	Nat Genet	Common variants in 22 loci are associated with QRS duration and cardiac ventricular conduction.	QRS duration	39,717 European ancestry individuals, 690 Orcadian individuals	7,170 European ancestry individuals	7p12.3	IGFBP3	rs7784776-G	0.43	1E-9		0.39	[0.25-0.53] ms increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
940	chr7	46628740	46628741	rs73121529	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	7p12.3	NR	rs73121529-T	NR	2E-18		0.0604	[0.047-0.074] unit decrease	Affymetrix [9000000] (imputed)	N
940	chr7	46630353	46630354	rs11769224	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	7p12.3	IGFBP3, LOC730338	rs11769224-?	NR	2E-32		0.817	[0.68-0.95] unit decrease	Affymetrix [11100000] (imputed)	N
940	chr7	46630601	46630602	rs11762530	33979322	Currant H	2021-05-12	PLoS Genet	Genetic variation affects morphological retinal phenotypes extracted from UK Biobank optical coherence tomography images.	Retinal nerve fibre layer thickness or ganglion cell inner plexiform layer thickness (MTAG)	31,434 European ancestry individuals	NA	7p12.3	NR	rs11762530-C	0.59	3E-28		0.53	[0.43-0.63] unit increase	Affymetrix [9231066] (imputed)	N
940	chr7	46630601	46630602	rs11762530	33979322	Currant H	2021-05-12	PLoS Genet	Genetic variation affects morphological retinal phenotypes extracted from UK Biobank optical coherence tomography images.	Ganglion cell inner plexiform layer (GCIPL) thickness	31,434 European ancestry individuals	NA	7p12.3	NR	rs11762530-C	0.59	3E-28		0.53	[0.43-0.63] unit increase	Affymetrix [9231066] (imputed)	N
940	chr7	46631579	46631580	rs62452723	30926877	Brcic L	2019-03-29	Sci Rep	Genome-wide association analysis suggests novel loci underlying thyroid antibodies in Hashimoto's thyroiditis.	Anti-thyroid peroxidase (TPOAb) levels in Hashimoto's thyroiditis	405 European ancestry cases	NA	7p12.3	intergenic	rs62452723-G	0.949	8E-6		0.721	[0.41-1.03] unit decrease	Illumina [6007542] (imputed)	N
940	chr7	46634597	46634598	rs2345701	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	7p12.3	NR	rs2345701-G	0.556486	9E-10		0.0582122	[0.039-0.077] unit decrease	Affymetrix [21375087] (imputed)	N
940	chr7	46634597	46634598	rs2345701	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	7p12.3	NR	rs2345701-?	NR	8E-6	(female)	0.10837	[0.061-0.156] unit decrease	Affymetrix [7794483] (imputed)	N
940	chr7	46634597	46634598	rs2345701	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	7p12.3	NR	rs2345701-?	NR	2E-8		0.12449	[0.081-0.168] unit decrease	Affymetrix [7794483] (imputed)	N
940	chr7	46637890	46637890	rs143741275	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	7p12.3	intergenic	rs143741275-A	0.5772	1E-29		0.0213	[0.018-0.025] unit decrease	Affymetrix [18391927] (imputed)	N
940	chr7	46637890	46637890	rs143741275	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	7p12.3	NR	rs143741275-AGTGTGT	0.420717	6E-22		0.064991	[0.051-0.079] unit increase	Affymetrix [17914406] (imputed)	N
940	chr7	46640899	46640900	rs6968945	27659466	van der Harst P	2016-09-27	J Am Coll Cardiol	52 Genetic Loci Influencing Myocardial Mass.	QRS duration	59,565 European ancestry individuals, 690 Orcadian (founder/genetic isolate) individuals	13,263 European ancestry individuals, 3,603 African American individuals, 4,619 Indian ancestry individuals	7p12.3	TNS3	rs6968945-?	NR	5E-9	(EA)	0.34	[0.22-0.46] unit increase	Affymetrix, Illumina, Perlegen [at least 2766983] (imputed)	N
940	chr7	46642733	46642734	rs6975610	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	7p12.3	NR	rs6975610-G	0.447712	5E-11		0.00552459	[0.0039-0.0072] unit increase	Affymetrix [16582909] (imputed)	N
940	chr7	46642733	46642734	rs6975610	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	7p12.3	NR	rs6975610-G	0.447712	1E-6		0.00451595	[0.0027-0.0064] unit increase	Affymetrix [16582965] (imputed)	N
940	chr7	46643944	46643945	rs17172730	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	7p12.3	NR	rs17172730-A	NR	3E-47		0.0346	[0.03-0.039] unit increase	Affymetrix [9000000] (imputed)	N
940	chr7	46646790	46646791	rs56225270	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	7p12.3		rs56225270-?	NR	3E-12				NR [~ 8900000] (imputed)	N
940	chr7	46659169	46659170	rs71545944	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	7p12.3	NR	rs71545944-G	NR	3E-10		0.0549	[0.038-0.072] unit decrease	Affymetrix [9000000] (imputed)	N
941	chr7	46670547	46670548	rs993184	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Endometriosis	4,511 European ancestry cases, 227,260 European ancestry controls, 1,786 East Asian ancestry cases, 80,975 East Asian ancestry controls	NA	7p12.3		rs993184-G	NR	5E-9		0.1092	[0.073-0.146] unit decrease	Affymetrix, Illumina [25734875] (imputed)	N
941	chr7	46673773	46673774	rs55909142	33106475	Li QS	2020-10-26	Transl Psychiatry	Genome-wide association studies of antidepressant class response and treatment-resistant depression.	Response to norepinephrine-dopamine reuptake inhibitors (responders vs non-responders)	3,971 European ancestry responders, 3,512 European ancestry non-responders	NA	7p12.3	NR	rs55909142-T	NR	5E-7		0.8391	NR	Illumina [at least 560000] (imputed)	N
941	chr7	46677369	46677370	rs12535551	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 11)	3,566 European ancestry individuals	4,680 European ancestry individuals	7p12.3		rs12535551-G	0.420566319	5E-11				Illumina [7417619] (imputed)	N
941	chr7	46678951	46678952	rs56947212	34130359	Curtis SW	2021-06-15	Genet Epidemiol	FAT4 identified as a potential modifier of orofacial cleft laterality.	Right unilateral cleft lip	43 Asian ancestry cases, 40 European ancestry cases, 47 Hispanic cases, 1,626 controls	NA	7p12.3	NR	rs56947212-?		4E-6		2.39	[1.65-3.47]	Illumina [539473] (imputed)	N
941	chr7	46686210	46686211	rs56298917	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	7p12.3	NR	rs56298917-A	0.301141	5E-14		0.0254374	[0.019-0.032] unit decrease	NR [19129689] (imputed)	N
941	chr7	46689570	46689571	rs17172739	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	7p12.3		rs17172739-?	NR	2E-8				NR [~ 8900000] (imputed)	N
941	chr7	46704419	46704420	rs34243925	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	7p12.3	NR	rs34243925-A	NR	1E-62		0.0851	[0.075-0.095] unit decrease	Affymetrix [9000000] (imputed)	N
941	chr7	46710330	46710331	rs700746	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	7p12.3	intergenic	rs700746-A	0.3939	5E-15	(EA)	0.0028	[0.002-0.0036] unit increase	Affymetrix [NR] (imputed)	N
941	chr7	46713053	46713054	rs117890478	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	7p12.3	NR	rs117890478-G	NR	2E-10		0.0647	[0.045-0.084] unit increase	Affymetrix [9000000] (imputed)	N
941	chr7	46720241	46720242	rs10241079	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	7p12.3	NR	rs10241079-?	NR	5E-7				Illumina [at least 7383741] (imputed)	N
941	chr7	46720710	46720711	rs10435178	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	7p12.3	LOC222052, LOC730338	rs10435178-A	0.036	4E-6		3.55	[2.01-6.27]	Illumina [1556551]	N
941	chr7	46723509	46723510	rs856563	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SET	5,359 Icelandic ancestry individuals	NA	7p12.3		rs856563-T	0.3589	2E-13		0.141662	[0.1-0.18] unit decrease	Illumina [7506463] (imputed)	N
941	chr7	46723509	46723510	rs856563	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	7p12.3	AK125311	rs856563-C	0.75	5E-10		0.455	[0.27-0.64] ml/min/1.73m2 decrease	Affymetrix, Illumina [at least 5248638] (imputed)	N
941	chr7	46726962	46726963	rs856560	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	7p12.3		rs856560-C	NR	3E-11		0.0133	[0.0094-0.0172] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
941	chr7	46728415	46728416	rs17260123	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	7p12.3	NR	rs17260123-T	NR	3E-14		0.054	[0.04-0.068] unit increase	Affymetrix [9000000] (imputed)	N
941	chr7	46729372	46729373	rs117729644	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	7p12.3	NR	rs117729644-T	NR	4E-17		0.0748	[0.057-0.092] unit increase	Affymetrix [9000000] (imputed)	N
941	chr7	46729485	46729486	rs17200751	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	7p12.3	NR	rs17200751-T	NR	4E-22		0.0792	[0.063-0.095] unit decrease	Affymetrix [9000000] (imputed)	N
941	chr7	46738349	46738350	rs28887535	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	7p12.3	NR	rs28887535-T	NR	5E-65		0.0663	[0.059-0.074] unit decrease	Affymetrix [9000000] (imputed)	N
941	chr7	46743619	46743620	rs111583052	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	7p12.3	NR	rs111583052-A	NR	5E-14		0.082	[0.061-0.103] unit decrease	Affymetrix [9000000] (imputed)	N
941	chr7	46743745	46743746	rs10234366	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	7p12.3	AC011294.3	rs10234366-G	0.895237	1E-9		0.0139631	[0.0095-0.0185] unit decrease	Affymetrix [12370749]	N
941	chr7	46753490	46753491	rs700750	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	7p12.3		rs700750-A	NR	3E-29		0.0201	[0.017-0.024] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
941	chr7	46753490	46753491	rs700750	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	7p12.3		rs700750-A	NR	4E-13		0.0154	[0.011-0.02] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
941	chr7	46753490	46753491	rs700750	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	7p12.3	NR	rs700750-A	0.63	7E-12		0.0129	[0.0092-0.0166] unit increase	NR [NR]	N
941	chr7	46753490	46753491	rs700750	32769997	Zhou W	2020-08-07	Nat Commun	GWAS of thyroid stimulating hormone highlights pleiotropic effects and inverse association with thyroid cancer.	Thyroid stimulating hormone levels	119,715 European ancestry individuals	NA	7p12.3	LOC730338, TNS3	rs700750-A	0.642711687593976	8E-13		0.0339	[0.025-0.043] SD increase	Illumina [22400000] (imputed)	N
941	chr7	46753490	46753491	rs700750	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in non-diabetics	152,624 European ancestry individuals, 36,369 African American individuals	NA	7p12.3	NR	rs700750-A	0.617	4E-11		0.345	[0.24-0.45] unit decrease	Affymetrix [NR] (imputed)	N
941	chr7	46753490	46753491	rs700750	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	7p12.3	NR	rs700750-A	0.66	3E-15		0.0029	[0.0023-0.0035] unit decrease	Affymetrix [NR] (imputed)	N
941	chr7	46753490	46753491	rs700750	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	7p12.3	EPS15P1	rs700750-A	0.487	3E-6	(IGFBP-3 )	0.03	[NR] ng/mL increase	Illumina [899892]	N
941	chr7	46753552	46753553	rs700752	21216879	Kaplan RC	2011-01-07	Hum Mol Genet	A genome-wide association study identifies novel loci associated with circulating IGF-I and IGFBP-3.	Insulin-like growth factors	10,280 European ancestry individuals	NA	7p12.3	TNS3	rs700752-G	0.65	5E-9	(IGF-I)			Affymetrix, Illumina [~ 2500000] (imputed)	N
941	chr7	46753552	46753553	rs700752	21216879	Kaplan RC	2011-01-07	Hum Mol Genet	A genome-wide association study identifies novel loci associated with circulating IGF-I and IGFBP-3.	Insulin-like growth factors	10,280 European ancestry individuals	NA	7p12.3	TNS3	rs700752-G	0.65	4E-21	(IGFBP-3)			Affymetrix, Illumina [~ 2500000] (imputed)	N
941	chr7	46753683	46753684	rs700753	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	7p12.3	LOC730338	rs700753-C	0.3166	5E-29		0.0031	[0.0025-0.0037] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
941	chr7	46753683	46753684	rs700753	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	7p12.3	LOC730338	rs700753-C	0.3408	3E-25		0.0033	[0.0025-0.0041] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
941	chr7	46753683	46753684	rs700753	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	7p12.3	LOC730338	rs700753-C	0.3066	2E-10		0.0049	[0.0033-0.0065] unit decrease	Affymetrix, Illumina [8176554] (imputed)	N
941	chr7	46755797	46755798	rs117865101	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	7p12.3	NR	rs117865101-T	NR	2E-47		0.0777	[0.067-0.088] unit increase	Affymetrix [9000000] (imputed)	N
941	chr7	46782158	46782159	rs11769597	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	7p12.3	NR	rs11769597-C	0.164	2E-6	(IFNalpha_STAT1_of_CD20p)			Illumina [5084123] (imputed)	N
941	chr7	46785984	46785985	rs71545950	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	7p12.3	NR	rs71545950-T	NR	2E-59		0.0916	[0.081-0.103] unit increase	Affymetrix [9000000] (imputed)	N
942	chr7	46801427	46801428	rs1464841	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	7p12.3		rs1464841-?	NR	2E-15				NR [~ 8900000] (imputed)	N
942	chr7	46803119	46803120	rs6976584	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	7p12.3	NR	rs6976584-G	NR	4E-12		0.0418	[0.03-0.054] unit decrease	Affymetrix [9000000] (imputed)	N
942	chr7	46803210	46803211	rs12154429	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7p12.3		rs12154429-?	NR	4E-13				NR [~ 8900000] (imputed)	N
942	chr7	46845254	46845255	rs4720550	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	7p12.3	NR	rs4720550-?	NR	2E-8				Illumina [7760689] (imputed)	N
942	chr7	46885231	46885232	rs4724511	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	7p12.3	NR	rs4724511-C	0.337668	2E-11		0.0249524	[0.018-0.032] unit decrease	NR [19129689] (imputed)	N
942	chr7	46886622	46886623	rs73091726	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	7p12.3	NR	rs73091726-A	NR	2E-9		0.0334	[0.022-0.044] unit increase	Affymetrix [9000000] (imputed)	N
942	chr7	46887212	46887213	rs4308634	31826910	Lu Y	2019-12-11	Cancer Epidemiol Biomarkers Prev	Identification of novel loci and new risk variant in known loci for colorectal cancer risk in East Asians.	Colorectal cancer	23,572 East Asian ancestry cases, 48,700 East Asian ancestry controls	58,131 European ancestry cases, 67,347 European ancestry controls	7p12.3		rs4308634-G	NR	6E-9		1.04	[1.03-1.06]	Affymetrix, Illumina [up to 47000000] (imputed)	N
942	chr7	46888950	46888951	rs4573161	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	7p12.3		rs4573161-?	NR	5E-54				NR [~ 8900000] (imputed)	N
942	chr7	46897554	46897555	rs150347869	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	7p12.3	Intergenic	rs150347869-A	1.0	3E-6	(AA)	0.483	unit increase	Illumina [NR] (imputed)	N
942	chr7	46897554	46897555	rs150347869	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	7p12.3	Intergenic	rs150347869-A	1.0	4E-7	(AA)	2.647	NR unit increase	Illumina [NR] (imputed)	N
942	chr7	46901293	46901294	rs12702262	28272467	Heilmann-Heimbach S	2017-03-08	Nat Commun	Meta-analysis identifies novel risk loci and yields systematic insights into the biology of male-pattern baldness.	Male-pattern baldness	10,846 European ancestry cases, 11,672 European ancestry controls	NA	7p12.3		rs12702262-G	0.24	3E-8		0.14	[0.1-0.18] unit decrease	Affymetrix, Illumina [8004650] (imputed)	N
942	chr7	46904299	46904299	rs58788673	29146897	Pirastu N	2017-11-17	Nat Commun	GWAS for male-pattern baldness identifies 71 susceptibility loci explaining 38% of the risk.	Male-pattern baldness	25,662 British ancestry cases, 17,928 British ancestry controls	13,367 European ancestry cases, 11,851 European ancestry controls, 3,436 cases, 2,435 controls	7p12.3	EPS15P1	rs58788673-T	NR	1E-17		0.142151	[0.11-0.17] unit increase	Affymetrix [27512692] (imputed)	N
942	chr7	46904299	46904299	rs58788673	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		7p12.3	NR	rs58788673-TCA	NR	1E-16		0.060618	NR unit increase	NR [NR] (imputed)	N
942	chr7	46909142	46909143	rs10273229	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	7p12.3	NR	rs10273229-T	0.232561	8E-32		0.0464481	[0.039-0.054] unit increase	NR [19129689] (imputed)	N
942	chr7	46915562	46915563	rs73094874	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	7p12.3	NR	rs73094874-G	0.0558776	1E-10		0.0460694	[0.032-0.06] unit decrease	NR [19129689] (imputed)	N
942	chr7	46920957	46920958	rs117911546	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	7p12.3	NR	rs117911546-T	NR	2E-10		0.04	[0.028-0.052] unit decrease	Affymetrix [9000000] (imputed)	N
943	chr7	46926694	46926695	rs10951878	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Colon cancer	3,793 European ancestry cases, 410,350 European ancestry controls	NA	7p12.3		rs10951878-C	0.491105	2E-7		1.1292	NR	Affymetrix [7846216] (imputed)	N
943	chr7	46926694	46926695	rs10951878	31089142	Law PJ	2019-05-14	Nat Commun	Association analyses identify 31 new risk loci for colorectal cancer susceptibility.	Colorectal cancer	31,197 European ancestry cases, 61,770 European ancestry controls	NA	7p12.3	NR	rs10951878-C	0.49	1E-8		1.06	[1.04-1.09]	Affymetrix, Illumina [> 10000000] (imputed)	N
943	chr7	46927916	46927917	rs73096833	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	7p12.3	NR	rs73096833-A	NR	8E-19		0.0572	[0.044-0.07] unit decrease	Affymetrix [9000000] (imputed)	N
943	chr7	46943758	46943759	rs12702271	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		7p12.3	NR	rs12702271-T	NR	1E-14		0.06	NR unit increase	NR [NR] (imputed)	N
943	chr7	46943758	46943759	rs12702271	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Male-pattern baldness	9,009 European ancestry cases, 8,491 European ancestry controls	NA	7p12.3	IGFBP3, TNS3	rs12702271-?	NR	3E-9		1.171	[1.111-1.233]	Illumina [13436641] (imputed)	N
943	chr7	46944806	46944807	rs2190016	25342443	Lindstrom S	2014-10-24	Nat Commun	Genome-wide association study identifies multiple loci associated with both mammographic density and breast cancer risk.	Mammographic density (non-dense area)	7,600 European ancestry individuals	343 European ancestry individuals, 1,472 Old Order Amish individuals, 8,564 individuals	7p12.3	intergenic	rs2190016-T	0.62	3E-6				Affymetrix, Illumina [~ 2500000] (imputed)	N
943	chr7	46946950	46946951	rs75731302	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Small vessel stroke	333 Indian ancestry cases, 2,154 Indian ancestry controls	NA	7p12.3		rs75731302-?	NR	5E-6		1.0519946	[1.02933702355745-1.07515087789217]	Illumina [7827597] (imputed)	N
943	chr7	46950624	46950625	rs78423723	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	7p12.3	NR	rs78423723-A	NR	7E-14		0.0326	[0.024-0.041] unit decrease	Affymetrix [9000000] (imputed)	N
943	chr7	46951832	46951833	rs7784778	32492107	Huang XF	2020-06-01	Invest Ophthalmol Vis Sci	Genomewide Association Study of Acute Anterior Uveitis Identifies New Susceptibility Loci.	Acute anterior uveitis in ankylosing spondylitis	2,752 European ancestry cases, 3,836 European ancestry controls	NA	7p12.3	intergenic	rs7784778-?	NR	6E-6		1.1904762	[1.1-1.28]	Illumina [7436415] (imputed)	N
943	chr7	46958955	46958956	rs34451306	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	7p12.3	NR	rs34451306-G	NR	1E-44		0.0921	[0.079-0.105] unit increase	Affymetrix [9000000] (imputed)	N
943	chr7	46970097	46970098	rs11772641	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	7p12.3	NR	rs11772641-T	NR	7E-12		0.0306	[0.022-0.039] unit decrease	Affymetrix [9000000] (imputed)	N
943	chr7	46983767	46983768	rs10251037	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	7p12.3	NR	rs10251037-G	0.168	3E-7	(IFNgamma_STAT1_of_Monocytes)			Illumina [5084123] (imputed)	N
943	chr7	46994485	46994486	rs10487776	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	7p12.3	NR	rs10487776-?	NR	5E-6		7472.5522	NR unit decrease	Illumina [2379855]	N
943	chr7	46996391	46996392	rs10253161	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7p12.3		rs10253161-?	NR	2E-12				NR [~ 8900000] (imputed)	N
943	chr7	47033056	47033057	rs12668152	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	7p12.3	NR	rs12668152-C	0.479423	3E-29		0.0345013	[0.028-0.041] unit decrease	NR [19129689] (imputed)	N
943	chr7	47049161	47049162	rs28874920	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	7p12.3		rs28874920-?	NR	1E-27				NR [~ 8900000] (imputed)	N
944	chr7	47075775	47075776	rs12668095	26220383	Jang HW	2015-06-02	Epilepsy Res	GWAS identifies two susceptibility loci for lamotrigine-induced skin rash in patients with epilepsy.	Epilepsy and lamotrigine-induced maculopapular eruptions	34 Korean ancestry cases, 1,080 Korean ancestry healthy controls	NA	7p12.3	TNS3	rs12668095-C	0.22	5E-7		3.4	[NR]	Affymetrix [4893794] (imputed)	N
944	chr7	47078433	47078434	rs2881493	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	7p12.3	NR	rs2881493-?	NR	1E-45				Affymetrix [NR]	N
944	chr7	47086804	47086805	rs4720575	28030426	Mahmoudpour SH	2017-03-27	Pharmacogenet Genomics	Meta-analysis of genome-wide association studies on the intolerance of angiotensin-converting enzyme inhibitors.	Angiotensin-converting enzyme inhibitor intolerance	972 European ancestry intolerant individuals, 4,189 European ancestry tolerant individuals	NA	7p12.3	TNS3	rs4720575-?	0.380062	1E-6		1.313155	[1.176686-1.465451]	Affymetrix, Illumina [NR] (imputed)	N
944	chr7	47126343	47126344	rs74778687	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	7p12.3	NR	rs74778687-?	NR	2E-8				Illumina [7760689] (imputed)	N
944	chr7	47179361	47179362	rs1583674	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (90 or 130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	7p12.3	intergenic	rs1583674-?	NR	4E-6		0.146	[0.068-0.224] unit decrease	Illumina [at least 13000000] (imputed)	N
945	chr7	47223565	47223566	rs10499658	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	7p12.3	NR	rs10499658-?	NR	2E-32				Affymetrix [NR]	N
945	chr7	47238706	47238707	rs1370916	24743840	Figueiredo JC	2014-04-17	PLoS Genet	Genome-wide diet-gene interaction analyses for risk of colorectal cancer.	Colorectal cancer (diet interaction)	9,287 European ancestry cases, 9,117 European ancestry controls	NA	7p12.3	MRPL42P4, TNS3	rs1370916-?	0.46-0.52	2E-6	(Red meat)	1.11	[1.06-1.15]	Affymetrix, Illumina [> 2700000] (imputed)	N
945	chr7	47275736	47275737	rs10265057	31097437	Plotnikov D	2019-05-16	Br J Ophthalmol	Association between birth weight and refractive error in adulthood: a Mendelian randomisation study.	Birth weight	188,039 European ancestry individuals	NA	7p12.3	NR	rs10265057-A	0.1	1E-8		0.032	[0.02-0.044] z score decrease	Affymetrix [up to 10400000] (imputed)	N
945	chr7	47275736	47275737	rs10265057	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	7p12.3	TNS3	rs10265057-G	0.091531	1E-9		0.027313	[0.018-0.036] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
946	chr7	47337529	47337530	rs10252457	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	7p12.3	NR	rs10252457-G	0.425632	2E-12		0.013839	[0.01-0.0177] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
946	chr7	47354221	47354222	rs75952150	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	7p12.3	NR	rs75952150-?	NR	4E-6		4.603	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
946	chr7	47364672	47364673	rs7781509	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p12.3	NR	rs7781509-A	0.38275	4E-14				Affymetrix, Illumina [24649327] (imputed)	N
946	chr7	47364672	47364673	rs7781509	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	7p12.3	NR	rs7781509-A	0.394618	8E-15		0.014629	[0.011-0.018] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
946	chr7	47364672	47364673	rs7781509	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p12.3	NR	rs7781509-A	0.387605	2E-10				Affymetrix, Illumina [23114412] (imputed)	N
946	chr7	47375199	47375200	rs7809597	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	7p12.3	TNS3	rs7809597-T	0.394321	1E-10		0.01459217	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
946	chr7	47386789	47386790	rs2470990	25387704	Malone SM	2014-12-01	Psychophysiology	Heritability and molecular-genetic basis of resting EEG activity: a genome-wide association study.	Electroencephalogram traits	2,383 European ancestry adolescents and 1,643 European ancestry adults from 1,613 families	NA	7p12.3	TNS3	rs2470990-?	NR	6E-6	(Alpha power, occipital)	0.33	[0.19-0.47] unit decrease	Illumina [527829]	N
946	chr7	47437243	47437244	rs56232506	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	7p12.3		rs56232506-?	NR	2E-8				NR [~ 8900000] (imputed)	N
946	chr7	47437243	47437244	rs56232506	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	7p12.3	NR	rs56232506-A	0.45	1E-11		1.06	[1.04-1.07]	Illumina [20370935] (imputed)	N
946	chr7	47437243	47437244	rs56232506	25217961	Al Olama AA	2014-09-14	Nat Genet	A meta-analysis of 87,040 individuals identifies 23 new susceptibility loci for prostate cancer.	Prostate cancer	34,379 European ancestry cases, 33,164 European ancestry controls, 5,327 African ancestry cases, 5,136 African ancestry controls, 2,563 Japanese ancestry cases, 4,391 Japanese ancestry controls, 1,034 Latino cases, 1,046 Latino controls	NA	7p12.3	TNS3	rs56232506-A	0.45	9E-9		1.06	[1.04-1.08]	Affymetrix, Illumina [up to 16852405] (imputed)	N
946	chr7	47437243	47437244	rs56232506	25217961	Al Olama AA	2014-09-14	Nat Genet	A meta-analysis of 87,040 individuals identifies 23 new susceptibility loci for prostate cancer.	Prostate cancer	34,379 European ancestry cases, 33,164 European ancestry controls, 5,327 African ancestry cases, 5,136 African ancestry controls, 2,563 Japanese ancestry cases, 4,391 Japanese ancestry controls, 1,034 Latino cases, 1,046 Latino controls	NA	7p12.3	TNS3	rs56232506-A	0.45	2E-9	(EA)	1.07	[1.05-1.09]	Affymetrix, Illumina [up to 16852405] (imputed)	N
946	chr7	47437273	47437274	rs59893503	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	7p12.3	TNS3	rs59893503-A	0.036868	1E-23		0.059868906	[0.048-0.072] unit decrease	Affymetrix [93095623] (imputed)	N
946	chr7	47437273	47437274	rs59893503	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	7p12.3	TNS3	rs59893503-A	0.0367	5E-13		0.06858149	[0.05-0.087] unit decrease	Affymetrix [~ 2500000] (imputed)	N
946	chr7	47437835	47437836	rs192154334	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	7p12.3	NR	rs192154334-?	NR	7E-6		15.899	NR unit decrease	Affymetrix [at least 600000] (imputed)	N
946	chr7	47440797	47440798	rs76459970	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	7p12.3	TNS3	rs76459970-A	0.036857	4E-14		0.04497322	[0.033-0.057] unit decrease	Affymetrix [93095623] (imputed)	N
946	chr7	47440797	47440798	rs76459970	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	7p12.3	TNS3	rs76459970-A	0.036855	7E-13		0.042604353	[0.031-0.054] unit decrease	Affymetrix [93095623] (imputed)	N
946	chr7	47442632	47442633	rs7776701	27539887	Chahal HS	2016-08-19	Nat Commun	Genome-wide association study identifies 14 novel risk alleles associated with basal cell carcinoma.	Basal cell carcinoma	12.945 European ancestry cases, 274,252 European ancestry controls	4,242 European ancestry cases, 12,802 European ancestry controls	7p12.3	TNS3	rs7776701-C	0.52	4E-8		1.06	[NR]	Illumina [at least 560000] (imputed)	N
946	chr7	47445640	47445641	rs700755	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	7p12.3		rs700755-G	NR	2E-9		0.0117	[0.0078-0.0156] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
946	chr7	47445640	47445641	rs700755	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Keratinocyte cancer (MTAG)	at least 18,538 European ancestry cases, at least 340,302 European ancestry controls	NA	7p12.3	TNS3	rs700755-A	0.506786	4E-10		1.0526316	[1.04-1.08]	Affymetrix [7600000] (imputed)	N
946	chr7	47445640	47445641	rs700755	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Basal cell carcinoma	31,787 European ancestry cases, 619,351 European ancestry controls	NA	7p12.3	TNS3	rs700755-A	0.505759	6E-12		1.06	[1.04-1.08]	Affymetrix, Illumina [up to 9061544] (imputed)	N
946	chr7	47447920	47447921	rs834603	33549134	Adolphe C	2021-02-06	Genome Med	Genetic and functional interaction network analysis reveals global enrichment of regulatory T cell genes influencing basal cell carcinoma susceptibility.	Basal cell carcinoma	17,416 European ancestry cases, 375,455 European ancestry controls	NA	7p12.3	TNS3	rs834603-G	0.493218	1E-8		0.061821047	[0.041-0.083] unit decrease	Affymetrix [7260263] (imputed)	N
946	chr7	47447920	47447921	rs834603	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	7p12.3	TNS3	rs834603-G	0.4908	7E-9		0.02077506	[0.014-0.028] unit decrease	Affymetrix [~ 2500000] (imputed)	N
946	chr7	47447920	47447921	rs834603	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	7p12.3	TNS3	rs834603-G	0.4909	4E-9		0.02108801	[0.014-0.028] unit decrease	Affymetrix [~ 2500000] (imputed)	N
946	chr7	47447920	47447921	rs834603	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	7p12.3	TNS3	rs834603-G	0.4908	7E-9		0.02077798	[0.014-0.028] unit decrease	Affymetrix [~ 2500000] (imputed)	N
946	chr7	47447920	47447921	rs834603	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	7p12.3	TNS3	rs834603-G	0.4909	9E-10		0.02207763	[0.015-0.029] unit decrease	Affymetrix [~ 2500000] (imputed)	N
946	chr7	47447920	47447921	rs834603	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	7p12.3	TNS3	rs834603-G	0.4909	4E-9		0.02124128	[0.014-0.028] unit decrease	Affymetrix [~ 2500000] (imputed)	N
947	chr7	47448639	47448640	rs865031	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	7p12.3	NR	rs865031-C	0.430127	5E-10		0.011781	[0.0081-0.0155] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
947	chr7	47451917	47451918	rs834608	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	7p12.3	NR	rs834608-A	NR	7E-14		1.051	[1.04-1.06]	Affymetrix, Illumina [29235255] (imputed)	N
947	chr7	47457465	47457466	rs865603	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	7p12.3	TNS3	rs865603-A	0.9608	3E-9		0.05479809	[0.037-0.073] unit increase	Affymetrix [~ 2500000] (imputed)	N
947	chr7	47457465	47457466	rs865603	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	7p12.3	TNS3	rs865603-A	0.9608	4E-9		0.05464258	[0.037-0.073] unit increase	Affymetrix [~ 2500000] (imputed)	N
947	chr7	47462468	47462469	rs10711047	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	7p12.3		rs10711047-C	NR	3E-8		0.013	[0.0085-0.0175] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
947	chr7	47474713	47474713	rs567940591	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	7p12.3	TNS3	rs567940591-CTT	0.432065	7E-11		0.014529033	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
947	chr7	47488568	47488569	rs73328514	29422604	Klein AP	2018-02-08	Nat Commun	Genome-wide meta-analysis identifies five new susceptibility loci for pancreatic cancer.	Pancreatic cancer	9,040 European ancestry cases, 12,496 European ancestry controls	up to 2,737 cases, up to 4,752 controls	7p12.3	TNS3	rs73328514-A	0.88	1E-7		1.1764705	[1.11-1.25]	Illumina [11381182] (imputed)	N
947	chr7	47511160	47511161	rs3801081	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Colon polyp	22,049 European ancestry cases, 332,368 European ancestry controls, 4,768 East Asian ancestry cases, 166,052 East Asian ancestry controls	NA	7p12.3		rs3801081-G	NR	3E-8		0.0564	[0.037-0.076] unit increase	Affymetrix, Illumina [20457468] (imputed)	N
947	chr7	47511160	47511161	rs3801081	31089142	Law PJ	2019-05-14	Nat Commun	Association analyses identify 31 new risk loci for colorectal cancer susceptibility.	Colorectal cancer	31,197 European ancestry cases, 61,770 European ancestry controls	NA	7p12.3	NR	rs3801081-G	0.68	2E-11		1.08	[1.06-1.11]	Affymetrix, Illumina [> 10000000] (imputed)	N
947	chr7	47522085	47522085	rs11427441	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	7p12.3	NR	rs11427441-CA	0.6538729999999999	1E-11		0.0200041	[0.014-0.026] unit increase	Affymetrix [16580851] (imputed)	N
947	chr7	47539510	47539511	rs34211819	34002017	Shen S	2021-05-17	NPJ Precis Oncol	A multi-omics study links TNS3 and SEPT7 to long-term former smoking NSCLC survival.	Lung cancer prognosis in former smokers	1,299 European ancestry long-term former smokers	NA	7p12.3	TNS3	rs34211819-A	0.35	4E-9		0.73	[0.66-0.81] HR	Illumina [100680]	N
947	chr7	47548892	47548893	rs12668436	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	7p12.3		rs12668436-?	NR	9E-10				NR [~ 8900000] (imputed)	N
947	chr7	47548892	47548893	rs12668436	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	NA	7p12.3	TNS3	rs12668436-T	0.7541	7E-13		0.1709	[0.12-0.22] unit decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
947	chr7	47562525	47562525	rs370083525	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris color (a* coordinate)	329 South Asian ancestry individuals		7p12.3	TNS3	rs370083525-CAAAAA	0.490625	7E-6		0.366022	[0.21-0.52] unit increase	Illumina [640625] (imputed)	N
947	chr7	47566156	47566157	rs334524	29460428	Gelernter J	2018-02-20	Alcohol Clin Exp Res	Genomewide association study of alcohol dependence and related traits in a Thai population.	Alcohol dependence symptom count	1,045 Thai ancestry individuals	NA	7p12.3	TNS3	rs334524-A	0.43	1E-6		0.6848	[0.41-0.96] unit increase	Illumina [at least 4683137] (imputed)	N
948	chr7	47633186	47633187	rs6974363	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p12.3	NR	rs6974363-G	0.685394	3E-11				Affymetrix, Illumina [24332387] (imputed)	N
948	chr7	47633186	47633187	rs6974363	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	7p12.3	NR	rs6974363-G	0.638458	1E-13		0.014455	[0.011-0.018] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
948	chr7	47633810	47633811	rs10277403	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	7p12.3		rs10277403-C	NR	3E-13		0.0163	[0.012-0.021] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
948	chr7	47633810	47633811	rs10277403	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	7p12.3		rs10277403-C	NR	2E-9		0.0133	[0.009-0.0176] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
948	chr7	47633810	47633811	rs10277403	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	7p12.3		rs10277403-C	0.637722	2E-13		0.017029375	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
948	chr7	47633810	47633811	rs10277403	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	7p12.3		rs10277403-C	0.637638	2E-15		0.018572643	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
948	chr7	47633810	47633811	rs10277403	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p12.3	NR	rs10277403-C	0.679826	1E-13				Affymetrix, Illumina [24246363] (imputed)	N
948	chr7	47633810	47633811	rs10277403	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	7p12.3		rs10277403-?	NR	7E-10				NR [~ 8900000] (imputed)	N
948	chr7	47634092	47634093	rs10235444	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	7p12.3		rs10235444-G	0.637826	3E-13		0.016278	[0.012-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
948	chr7	47634092	47634093	rs10235444	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	7p12.3	NR	rs10235444-G	0.640779	8E-15		0.0149	[0.011-0.019] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
948	chr7	47634092	47634093	rs10235444	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	7p12.3	NR	rs10235444-G	0.637877	2E-10		0.012794	[0.0089-0.0167] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
948	chr7	47635566	47635567	rs10226458	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	7p12.3		rs10226458-A	0.63745	6E-9		0.013343977	[0.0089-0.0178] unit increase	Affymetrix [93095623] (imputed)	N
948	chr7	47635566	47635567	rs10226458	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	7p12.3		rs10226458-A	0.637492	1E-9		0.014175332	[0.0096-0.0187] unit decrease	Affymetrix [93095623] (imputed)	N
948	chr7	47635566	47635567	rs10226458	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	7p12.3		rs10226458-?	NR	4E-10				NR [~ 8900000] (imputed)	N
948	chr7	47685480	47685481	rs4720604	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Diastolic blood pressure (long-term average)	5,304 African American individuals, 13,137 European ancestry individuals, 1,317 Hispanic individuals, 1,439 admixed individuals, 703 Chinese ancestry individuals	6,500 African American individuals, 2,451 European ancestry individuals, 2,869 Hispanic individuals	7p12.3	NR	rs4720604-T	0.5307	7E-7		0.3241	[0.2-0.45] mmHg increase	Affymetrix, Illumina [NR] (imputed)	N
948	chr7	47709037	47709038	rs56031910	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Alanine aminotransferase levels in excessive alcohol consumption	951 individuals	NA	7p12.3	NR	rs56031910-?	NR	3E-6		0.0418	[0.024-0.059] unit increase	Illumina [~ 7800000] (imputed)	N
949	chr7	47763484	47763485	rs10258656	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	7p12.3	PKD1L1	rs10258656-?		1E-11				Affymetrix, Illumina [NR] (imputed)	N
949	chr7	47775052	47775053	rs12702376	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	35,422 individuals (>=25 years old)	NA	7p12.3		rs12702376-C	NR	8E-16		0.0278	[0.021-0.034] mm decrease	Affymetrix, Illumina [8936601] (imputed)	N
949	chr7	47775052	47775053	rs12702376	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	29,580 European ancestry individuals, 14,462 Asian ancestry individuals	88,218 European ancestry individuals	7p12.3		rs12702376-C	0.85	3E-86		0.029	mm decrease	Affymetrix, Illumina [8936601] (imputed)	N
949	chr7	47775052	47775053	rs12702376	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	29,580 European ancestry individuals	NA	7p12.3		rs12702376-C	0.84	9E-18		0.028	mm decrease	Affymetrix, Illumina [8936601] (imputed)	N
949	chr7	47779968	47779969	rs7800244	22841784	Patin E	2012-07-26	Gastroenterology	Genome-wide association study identifies variants associated with progression of liver fibrosis from HCV infection.	Hepatitis C induced liver fibrosis	1,161 European ancestry HCV-infected individuals	1,181 European ancestry HCV-infected individuals	7p12.3	PKD1L1	rs7800244-T	0.18	3E-6	(Binary F0-1/F3-4)			Illumina [780650] (imputed)	N
949	chr7	47810100	47810101	rs181474944	30557369	Yodsurang V	2018-12-17	PLoS One	Genome-wide association study (GWAS) of ovarian cancer in Japanese predicted regulatory variants in 22q13.1.	Ovarian cancer	681 Japanese ancestry cases, 17,492 Japanese ancestry controls	NA	7p12.3	MGC16075	rs181474944-C	0.0150	6E-6		2.4570024	[1.67-3.62]	Illumina [7521072] (imputed)	N
949	chr7	47829316	47829317	rs1551277	25390645	Otowa T	2014-11-12	PLoS One	Genome-wide and gene-based association studies of anxiety disorders in European and African American samples.	Anxiety disorder	324 African American cases, 273 African American controls, 757 European ancestry cases, 940 European ancestry controls	NA	7p12.3	PKD1L1	rs1551277-A		7E-6	(EA, factor score analysis)	0.068	[NR] unit increase	Affymetrix [up to 730090]	N
950	chr7	47871971	47871972	rs149662107	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD25 on IgD+ CD38dim B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	7p12.3		rs149662107-A	0.00654	6E-9		0.9269	[0.61-1.24] unit decrease	Illumina [18238311] (imputed)	N
950	chr7	47877894	47877895	rs17710886	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	7p12.3	NR	rs17710886-?	NR	1E-6				Affymetrix [NR]	N
950	chr7	47886521	47886522	rs146605392	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 130,976 European ancestry men, up to 164,238  African American, South Asian, East Asian and Hispanic ancestry men	up to 62,500 European ancestry men	7p12.3	PKD1L1	rs146605392-C	0.9993	4E-6		0.3057	[0.18-0.44] unit increase	Affymetrix, Illumina [at least 228985]	N
950	chr7	47886521	47886522	rs146605392	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 130,976 European ancestry men	up to 62,500 European ancestry men	7p12.3	PKD1L1	rs146605392-C	0.9991	1E-6		0.3251	[0.19-0.46] unit increase	Affymetrix, Illumina [at least 228985]	N
950	chr7	47896157	47896158	rs6967514	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	7p12.3	Intergenic	rs6967514-?	NR	2E-7		1.408	[NR]	Affymetrix [492217] (imputed)	N
950	chr7	47901118	47901119	rs11763656	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota alpha diversity (Shannon index)	1,068 Japanese ancestry individuals	NA	7p12.3	HUS1, PKD1L1	rs11763656-T	0.40	1E-6	(male)	0.198	[0.12-0.28] unit decrease	Illumina [6380737] (imputed)	N
950	chr7	47907213	47907214	rs10951933	27802415	Salvi E	2016-10-31	Hypertension	Genome-Wide and Gene-Based Meta-Analyses Identify Novel Loci Influencing Blood Pressure Response to Hydrochlorothiazide.	Diastolic blood pressure response to hydrochlorothiazide in hypertension	1,739 European ancestry individuals	430 African American individuals	7p12.3	PKD1L1	rs10951933-T	0.2	3E-6	(EA)	0.75	[NR] mmHg increase	Affymetrix, Illumina [up to 2500000] (imputed)	N
952	chr7	48105492	48105493	rs9639991	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	7p12.3		rs9639991-?	NR	1E-8				NR [~ 8900000] (imputed)	N
952	chr7	48116822	48116823	rs2686802	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p12.3	NR	rs2686802-C	0.433123	5E-11				Affymetrix, Illumina [24649327] (imputed)	N
952	chr7	48116822	48116823	rs2686802	31560688	Geidenstam N	2019-09-27	PLoS One	Using metabolite profiling to construct and validate a metabolite risk score for predicting future weight gain.	Uridine levels	1,937 individuals	NA	7p12.3	intergenic	rs2686802-C	0.441	2E-7		0.1701	[0.11-0.23] unit increase	Affymetrix, Illumina [up to 22000000] (imputed)	N
952	chr7	48116886	48116886	rs201669710	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	7p12.3		rs201669710-CA	0.419119	2E-9		0.013683135	[0.0092-0.0182] unit increase	Affymetrix [93095623] (imputed)	N
952	chr7	48134718	48134719	rs11768083	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	7p12.3	LOC136288	rs11768083-?	NR	6E-8	(uridine)	0.20589277	[0.13-0.28] unit increase	Affymetrix [at least 2500000] (imputed)	N
952	chr7	48145723	48145724	rs71547877	33831438	Williams JE	2021-04-05	Genomics	Key genetic variants associated with variation of milk oligosaccharides from diverse human populations.	Human milk oligosaccharide concentration (lacto-N-fucopentaose III) in non-secretors	90 European, Sub-Saharan African, Hispanic or unknown ancestry individuals	NA	7p12.3		rs71547877-?	NR	5E-9				Illumina [1128286]	N
952	chr7	48165055	48165056	rs145671841	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	7p12.3	UPP1	rs145671841-T	0.0186086959052197	7E-6	(O_Lactobacillales_HB)	1.08143	[0.61-1.55] unit decrease	Illumina [7711310] (imputed)	N
952	chr7	48233390	48233391	rs144495862	26545630	Deming Y	2015-09-25	Neurobiol Aging	A potential endophenotype for Alzheimer's disease: cerebrospinal fluid clusterin.	Cerebrospinal fluid clusterin levels	300 Alzheimer's disease cases, 373 controls	NA	7p12.3	ABCA13	rs144495862-?		9E-6		0.422	[NR] unit decrease	Illumina [5970354] (imputed)	N
953	chr7	48240589	48240589	rs35878068	34162658	Quinn MC	2021-06-23	Cancer Epidemiol Biomarkers Prev	Identification of a locus near ULK1 associated with progression-free survival in ovarian cancer.	Progression free survival in serous epithelial ovarian cancer	4,037 European ancestry individuals	NA	7p12.3	NR	rs35878068-G		9E-6		0.134	[0.075-0.193] unit increase	Illumina [12770451] (imputed)	N
953	chr7	48266194	48266195	rs17712049	25367360	Li Q	2014-11-04	Hum Genet	Genome-wide association study for refractive astigmatism reveals genetic co-determination with spherical equivalent refractive error: the CREAM consortium.	Refractive astigmatism	8,487 European ancestry cases aged 25 years or older, 23,481 European ancestry controls aged 25 years or older, 907 European ancestry cases aged less than 25 years, 4,733 European ancestry controls aged less than 25 years, 3,076 Asian ancestry cases aged 25 years or older, 6,219 Asian ancestry controls aged 25 years or older, 247 Chinese ancestry cases aged less than 25 years, 670 Chinese ancestry controls aged less than 25 years	NA	7p12.3	ABCA13	rs17712049-C	0.875	4E-6	(EA, less than 25 years)	1.569	[1.295-1.902]	Affymetrix, Illumina [NR] (imputed)	N
953	chr7	48266842	48266842	rs150972279	34748635	Miranda JP	2021-11-08	J Clin Endocrinol Metab	Genome-Wide Association Study And Polygenic Risk Scores Of Serum Dheas Levels In A Chilean Children Cohort.	DHEAS levels	788 Hispanic or Latin American individuals	NA	7p12.3	ABCA13	rs150972279-AT	0.2	8E-6		0.07	unit increase	Illumina [5510858] (imputed)	N
954	chr7	48373954	48373955	rs191092256	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Unilateral cleft lip and palate	205 Asian ancestry cases, 315 European ancestry cases, 692 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	7p12.3	NR	rs191092256-?	NR	8E-6		2.71	[2.38-3.09]	Illumina [539000] (imputed)	N
954	chr7	48403750	48403751	rs17661843	27723756	Wang J	2016-10-10	Nat Genet	Genome-wide association analysis identifies variation in vitamin D receptor and other host factors influencing the gut microbiota.	Gut microbiota (bacterial taxa)	1,812 European ancestry individuals	NA	7p12.3	ABCA13	rs17661843-T	NR	4E-14	(Unclassified Acidaminococcaceae)	1.4	unit decrease	Affymetrix, Illumina [6344846] (imputed)	N
954	chr7	48444248	48444249	rs1368652	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	7p12.3	NR	rs1368652-?	NR	4E-8				Illumina [7760689] (imputed)	N
956	chr7	48711972	48711973	rs114438201	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7p12.3	NR	rs114438201-G	0.01045	3E-8	(EMILIN2)	0.2502	NR unit increase	Illumina [1671387] (imputed)	N
956	chr7	48726192	48726193	rs7779564	31220337	Carr DF	2019-06-20	Clin Pharmacol Ther	Genome-wide association study of statin-induced myopathy in patients recruited using the UK clinical practice research datalink.	Simvastatin-induced myopathy	85 European ancestry cases, 2,501 controls	NA	7p12.3	intergenic	rs7779564-?	NR	2E-6		3.37	[1.82-6.22]	Illumina [654642] (imputed)	N
956	chr7	48733392	48733393	rs73096474	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	7p12.3	NR	rs73096474-?	NR	2E-8				Illumina [7760689] (imputed)	N
956	chr7	48752799	48752800	rs4917168	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	7p12.3		rs4917168-?	NR	3E-9				NR [~ 8900000] (imputed)	N
956	chr7	48758120	48758121	rs11977916	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	7p12.3		rs11977916-A	0.554	4E-10	(conditional-joint)	0.0088	[0.0061-0.0115] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
957	chr7	48811505	48811506	rs13309098	28749367	Gondalia R	2017-06-08	Environ Health Perspect	Genome-wide Association Study of Susceptibility to Particulate Matter-Associated QT Prolongation.	QT interval (ambient particulate matter interaction)	14,889 European ancestry individuals, 5,707 African American individuals, 1,562 Hispanic individuals	NA	7p12.3	ABCA13, CDC14C	rs13309098-G	0.93	2E-6		2.37	[1.39-3.35] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
957	chr7	48817964	48817965	rs11767191	22952603	Hart AB	2012-08-28	PLoS One	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 10 individuals	NA	7p12.3	intergenic	rs11767191-?	NR	1E-6	(SF7)			Affymetrix [5476100] (imputed)	N
957	chr7	48820535	48820536	rs36119825	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	7p12.3	Intergenic	rs36119825-A	0.4465	2E-10	(MTAG)	0.0083	[0.0058-0.0108] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
957	chr7	48823153	48823154	rs12670376	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	7p12.3		rs12670376-A	0.4464	6E-11		0.0092	[0.0065-0.0119] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
957	chr7	48832241	48832242	rs74617513	33483693	Clements CC	2021-01-22	Mol Psychiatry	Genome-wide association study of patients with a severe major depressive episode treated with electroconvulsive therapy.	Major depressive episode treated with electroconvulsive therapy	2,725 European ancestry cases, 3,290 European ancestry controls	NA	7p12.3	NR	rs74617513-?	NR	7E-6		1.9086	[1.63-2.19]	Illumina [NR] (imputed)	N
957	chr7	48839002	48839003	rs12539264	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	7p12.3	NR	rs12539264-G	0.2824	7E-9		0.0293	[0.02-0.039] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
957	chr7	48839002	48839003	rs12539264	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	7p12.3	NR	rs12539264-G	0.2656	9E-11		0.029	[0.02-0.038] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
958	chr7	48895259	48895260	rs142075585	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	7p12.3	Intergenic	rs142075585-A	0.012	3E-6		0.074	NR unit decrease	Illumina [NR] (imputed)	N
958	chr7	48907717	48907718	rs10232860	25881214	Shah AA	2015-02-27	Heart Surg Forum	Genetic variants associated with vein graft stenosis after coronary artery bypass grafting.	Vein graft stenosis in coronary artery bypass grafting	361 European ancestry cases, 160 European ancestry controls	NA	7p12.3	ABCA13	rs10232860-G	0.17	5E-6				Illumina [905781]	N
958	chr7	48925400	48925401	rs9918731	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	7p12.3	UPP1	rs9918731-?	NR	8E-6	(anthranilic acid)	0.15629943	[0.088-0.225] unit decrease	Affymetrix [at least 2500000] (imputed)	N
959	chr7	49069993	49069994	rs7781172	28881265	Sobalska-Kwapis M	2017-09-01	Eur J Obstet Gynecol Reprod Biol	New variants near RHOJ and C2, HLA-DRA region and susceptibility to endometriosis in the Polish population-The genome-wide association study.	Endometriosis	171 European ancestry cases, 2,934 European ancestry controls	NA	7p12.2	NR	rs7781172-T	0.04686	1E-6		2.393	[1.659-3.45]	Illumina [274400]	N
959	chr7	49119499	49119500	rs4455778	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in never smokers	2,355 European ancestry cases,  7,504 European ancestry controls	NA	7p12.2	CDC14C, VWC2	rs4455778-T	0.355925471	4E-6		1.1842692	[1.102042629-1.272630905]	Illumina [10439017] (imputed)	N
961	chr7	49329679	49329680	rs7801534	23400010	Del-Aguila JL	2013-02-12	Pharmacogenomics J	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NA	7p12.2	CDC14C	rs7801534-G	0.17	7E-7	(AA-glucose response)	4.96	[3.02-6.9] mg/dL increase	Affymetrix, Illumina [> 2000000] (imputed)	N
961	chr7	49363919	49363922	rs199690807	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	7p12.2		rs199690807-G	NR	6E-6		2.7449	[1.58-3.91] unit increase	Illumina [NR] (imputed)	N
961	chr7	49369427	49369428	rs149123477	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Hyperopia	10,828 European ancestry hyperopia cases, 21,416 European ancestry emmetropia controls	NA	7p12.2	NR	rs149123477-?	NR	3E-6		0.707775	[0.41-1] unit increase	NR [13958389] (imputed)	N
962	chr7	49469002	49469003	rs740083	25436638	Malinowski JR	2014-12-01	PLoS One	Genetic variants associated with serum thyroid stimulating hormone (TSH) levels in European Americans and African Americans from the eMERGE Network.	Serum thyroid-stimulating hormone levels	4,501 European ancestry individuals, 351 African American individuals	NA	7p12.2	VWC2	rs740083-A	0.24	5E-6	(EA)	0.05	[0.03-0.07] unit decrease	Illumina [up to 905285]	N
963	chr7	49616202	49616203	rs10269783	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	7p12.2		rs10269783-A	NR	2E-10		0.0123	[0.0086-0.016] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
963	chr7	49616202	49616203	rs10269783	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	7p12.2	NR	rs10269783-?	NR	3E-10				Affymetrix [~ 8270000] (imputed)	N
963	chr7	49616202	49616203	rs10269783	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	7p12.2		rs10269783-?	NR	4E-11				NR [~ 8900000] (imputed)	N
963	chr7	49616202	49616203	rs10269783	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	7p12.2	NA	rs10269783-A	0.4171	2E-14		0.0126	[0.0093-0.0159] unit increase	NR [~ 27400000] (imputed)	N
963	chr7	49616202	49616203	rs10269783	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	7p12.2	NA	rs10269783-A	0.4171	2E-14		0.0126	[0.0093-0.0159] unit increase	NR [~ 27400000] (imputed)	N
963	chr7	49616202	49616203	rs10269783	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	7p12.2	NR	rs10269783-G	NR	3E-7		0.013	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
963	chr7	49616202	49616203	rs10269783	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	7p12.2	NR	rs10269783-A	0.386	5E-12	(Brorin, VWC2.11121.56.3)	0.18	[0.12-0.24] unit increase	Affymetrix [10572788] (imputed)	N
963	chr7	49616202	49616203	rs10269783	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	7p12.2	CDC14C, VWC2	rs10269783-A	0.37	5E-10		0.015	[0.011-0.019] unit increase	Illumina [6108953] (imputed)	N
963	chr7	49616202	49616203	rs10269783	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	7p12.2	VWC2	rs10269783-A	0.435	4E-6	(EA)	0.014	[0.0083-0.0205] kg/m2 increase	Affymetrix, Illumina [2550021]	N
963	chr7	49616202	49616203	rs10269783	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	7p12.2	VWC2	rs10269783-A	0.431	2E-6		0.014	[0.0084-0.0202] kg/m2 increase	Affymetrix, Illumina [2550021]	N
963	chr7	49633801	49633802	rs4492324	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	7p12.2	intergenic	rs4492324-G	0.235	8E-6	(RQmax)	0.04	[NR] increase	Illumina [899892]	N
964	chr7	49703776	49703777	rs148745454	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Pursuit maintenance gain	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	7p12.2	VWC2	rs148745454-G	0.08354	7E-6				Illumina [4404269] (imputed)	N
964	chr7	49730939	49730940	rs117295891	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (negative Marder score)	1,390 European ancestry cases	NA	7p12.2		rs117295891-G	NR	6E-6	(GLM)	2.4809	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
964	chr7	49733629	49733630	rs78400729	31792241	Gouveia MH	2019-12-02	Sci Rep	Genetics of cognitive trajectory in Brazilians: 15 years of follow-up from the Bambui-Epigen Cohort Study of Aging.	Cognitive decline (age-related)	1,407 Brazilian ancestry individuals	NA	7p12.2		rs78400729-?	NR	3E-7		0.05813	unit decrease	Illumina [at least 2500000] (imputed)	N
964	chr7	49736399	49736400	rs150356279	31792241	Gouveia MH	2019-12-02	Sci Rep	Genetics of cognitive trajectory in Brazilians: 15 years of follow-up from the Bambui-Epigen Cohort Study of Aging.	Cognitive decline (age-related)	1,407 Brazilian ancestry individuals	NA	7p12.2		rs150356279-?	NR	3E-7		0.05816	unit decrease	Illumina [at least 2500000] (imputed)	N
964	chr7	49736919	49736920	rs75968745	31792241	Gouveia MH	2019-12-02	Sci Rep	Genetics of cognitive trajectory in Brazilians: 15 years of follow-up from the Bambui-Epigen Cohort Study of Aging.	Cognitive decline (age-related)	1,407 Brazilian ancestry individuals	NA	7p12.2		rs75968745-?	NR	3E-7		0.05816	unit decrease	Illumina [at least 2500000] (imputed)	N
964	chr7	49741184	49741185	rs17133460	31792241	Gouveia MH	2019-12-02	Sci Rep	Genetics of cognitive trajectory in Brazilians: 15 years of follow-up from the Bambui-Epigen Cohort Study of Aging.	Cognitive decline (age-related)	1,407 Brazilian ancestry individuals	NA	7p12.2		rs17133460-?	NR	3E-7		0.05816	unit decrease	Illumina [at least 2500000] (imputed)	N
964	chr7	49741607	49741608	rs79868020	31792241	Gouveia MH	2019-12-02	Sci Rep	Genetics of cognitive trajectory in Brazilians: 15 years of follow-up from the Bambui-Epigen Cohort Study of Aging.	Cognitive decline (age-related)	1,407 Brazilian ancestry individuals	NA	7p12.2		rs79868020-?	NR	3E-7		0.05816	unit decrease	Illumina [at least 2500000] (imputed)	N
964	chr7	49757757	49757758	rs148681119	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	7p12.2	NR	rs148681119-A	0.023	2E-18	(Brorin, VWC2.11121.56.3)	0.75	[0.57-0.93] unit increase	Affymetrix [10572788] (imputed)	N
964	chr7	49759035	49759036	rs1365086	33610756	Gao H	2021-02-18	Mitochondrion	A Genome-Wide Association Study in Human Lymphoblastoid Cells Supports Safety of Mitochondrial Complex I Inhibitor.	tricyclic pyrone compound response (IC50)	36 African American lymphoblastoid cell lines, 84 European ancestry lymphoblastoid cell lines, 76 Han Chinese ancestry lymphoblastoid cell lines	NA	7p12.2	VWC2	rs1365086-?	NR	9E-6				Affymetrix, Illumina [1184972]	N
965	chr7	49810965	49810966	rs12673518	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	7p12.2	ZPBP	rs12673518-?	NR	5E-6	(CE 18:1)	0.16032797	[0.092-0.229] unit increase	Affymetrix [at least 2500000] (imputed)	N
965	chr7	49812563	49812564	rs79259707	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein VWC2	5,364 Icelandic ancestry individuals	NA	7p12.2		rs79259707-A	0.1316	6E-36		0.329683	[0.28-0.38] unit decrease	Illumina [7506463] (imputed)	N
965	chr7	49812563	49812564	rs79259707	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	7p12.2	VWC2	rs79259707-C	0.86796875	1E-22	(VWC2, 11121_56_3)	0.34048197	[0.27-0.41] unit increase	Illumina [> 1000000] (imputed)	N
965	chr7	49813994	49813995	rs73347629	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein VWC2	5,364 Icelandic ancestry individuals	NA	7p12.2		rs73347629-C	0.02652	6E-15		0.439512	[0.33-0.55] unit decrease	Illumina [7506463] (imputed)	N
965	chr7	49818126	49818127	rs482968	31320639	Hillary RF	2019-07-18	Nat Commun	Genome and epigenome wide studies of neurological protein biomarkers in the Lothian Birth Cohort 1936.	Neurological blood protein biomarker levels	750 European ancestry individuals	NA	7p12.2	VWC2	rs482968-G	0.553	5E-17	(VWC2)	0.4411	[0.34-0.54] unit increase	Illumina [8683751] (imputed)	N
965	chr7	49818316	49818317	rs481076	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	7p12.2	NR	rs481076-G	0.458	6E-40	(Brorin, VWC2.11121.56.3)	0.32	[0.28-0.36] unit decrease	Affymetrix [10572788] (imputed)	N
965	chr7	49818634	49818634	rs372065719	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	7p12.2	VWC2	rs372065719-GGA	0.154	7E-55	(Brorin, VWC2.11121.56.3)	0.55	[0.47-0.63] unit decrease	Affymetrix [10572788] (imputed)	N
965	chr7	49854559	49854560	rs17731405	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first birth	542,901 European ancestry individuals	NA	7p12.2	VWC2	rs17731405-A	0.8464	1E-8		0.0735	[0.048-0.099] unit increase	NR [9744772] (imputed)	N
965	chr7	49861368	49861369	rs11767338	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	7p12.2	NR	rs11767338-T	0.735278	3E-9		0.0135447	[0.0091-0.018] unit decrease	NR [NR]	N
965	chr7	49869770	49869771	rs17551064	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	7p12.2		rs17551064-A	0.8378	2E-13		0.0141	[0.01-0.018] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
965	chr7	49869770	49869771	rs17551064	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	7p12.2	Intergenic	rs17551064-A	0.8378	1E-11	(MTAG)	0.012	[0.0085-0.0155] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
965	chr7	49894194	49894195	rs144872818	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	7p12.2	VWC2	rs144872818-T	0.996	3E-6	(AA)	0.186	unit increase	Illumina [NR] (imputed)	N
965	chr7	49894348	49894349	rs521484	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	7p12.2	NR	rs521484-G	0.2332	2E-8		1.0405828	[1.03-1.05]	Affymetrix, Illumina [NR] (imputed)	N
965	chr7	49902974	49902975	rs2128941	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	7p12.2		rs2128941-?	NR	3E-8				NR [~ 8900000] (imputed)	N
966	chr7	49965290	49965291	rs142422697	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	7p12.2	Intergenic	rs142422697-C	0.996	1E-6	(AA)	0.189	unit increase	Illumina [NR] (imputed)	N
966	chr7	49989817	49989818	rs140945396	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	7p12.2		rs140945396-?	NR	3E-9				NR [~ 8900000] (imputed)	N
967	chr7	50111355	50111356	rs7786619	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	7p12.2	ZPBP	rs7786619-G	0.430278	4E-14		0.016954033	[0.013-0.021] unit increase	Affymetrix [93095623] (imputed)	N
967	chr7	50155450	50155451	rs1911764	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	7p12.2	NR	rs1911764-A	0.798918237064847	5E-8		0.010074652	[0.0065-0.0137] unit decrease	NR [NR]	N
967	chr7	50155450	50155451	rs1911764	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	7p12.2	NR	rs1911764-A	0.798918237064847	5E-8		0.006458784	[0.0041-0.0088] unit decrease	NR [NR]	N
967	chr7	50174556	50174557	rs10267578	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	7p12.2		rs10267578-T	0.559757	9E-10		1.026562	[1.02-1.04]	Affymetrix, Illumina [9851866] (imputed)	N
967	chr7	50175653	50175654	rs12718244	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	7p12.2	C7orf72	rs12718244-?	NR	2E-9	(subset analysis)			Illumina [130052]	N
967	chr7	50175653	50175654	rs12718244	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	7p12.2	NR	rs12718244-A	0.4081	1E-8	(EA)	1.0744148	[1.05-1.1]	Affymetrix, Illumina [~ 9000000] (imputed)	N
967	chr7	50175653	50175654	rs12718244	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	7p12.2	NR	rs12718244-A	0.4081	3E-14	(EA)	1.079147	[1.06-1.1]	Affymetrix, Illumina [~ 9000000] (imputed)	N
967	chr7	50175653	50175654	rs12718244	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	7p12.2	NR	rs12718244-A	0.4081	5E-11	(EA)	1.0833611	[1.06-1.11]	Affymetrix, Illumina [~ 9000000] (imputed)	N
967	chr7	50176162	50176163	rs10228836	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Keratinocyte cancer (MTAG)	at least 18,538 European ancestry cases, at least 340,302 European ancestry controls	NA	7p12.2	AC020743.2	rs10228836-A	0.580195	2E-10		1.0526316	[1.04-1.08]	Affymetrix [7600000] (imputed)	N
967	chr7	50176162	50176163	rs10228836	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Basal cell carcinoma	31,787 European ancestry cases, 619,351 European ancestry controls	NA	7p12.2	AC020743.2	rs10228836-A	0.558916	4E-11		1.06	[1.04-1.07]	Affymetrix, Illumina [up to 9061544] (imputed)	N
967	chr7	50177705	50177706	rs12718245	33549134	Adolphe C	2021-02-06	Genome Med	Genetic and functional interaction network analysis reveals global enrichment of regulatory T cell genes influencing basal cell carcinoma susceptibility.	Basal cell carcinoma	17,416 European ancestry cases, 375,455 European ancestry controls	NA	7p12.2	C7orf72	rs12718245-C	0.421538	5E-9		0.06472312	[0.043-0.086] unit decrease	Affymetrix [7260263] (imputed)	N
967	chr7	50180111	50180112	rs11185600	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	7p12.2		rs11185600-?	NR	1E-7		0.943599	[0.92-0.97]	NR [685523]	N
967	chr7	50191352	50191353	rs10250629	27723757	Jin Y	2016-11-01	Nat Genet	Genome-wide association studies of autoimmune vitiligo identify 23 new risk loci and highlight key pathways and regulatory variants.	Vitiligo	2,853 European ancestry cases and 37,405 European ancestry controls	1,827 European ancestry cases and 2,181 European ancestry controls	7p12.2	c7orf72	rs10250629-?	NR	2E-7		1.1363636	NR	Illumina [8966411] (imputed)	N
967	chr7	50193204	50193205	rs1456906	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	7p12.2	C7orf72	rs1456906-C	0.420492	2E-12		0.015825268	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
967	chr7	50193204	50193205	rs1456906	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	7p12.2		rs1456906-?	NR	8E-10				NR [~ 8900000] (imputed)	N
968	chr7	50222360	50222361	rs897693	33574277	Kawai Y	2021-02-11	NPJ Genom Med	Mapping of susceptible variants for cold medicine-related Stevens-Johnson syndrome by whole-genome resequencing.	Cold medicine-related Stevens-Johnson syndrome/toxic epidermal necrolysis (SJS/TEN) with severe ocular complications	133 Japanese ancestry cases, 418 Japanese ancestry controls	NA	7p12.2		rs897693-?	NR	3E-6		4.39		Illumina [7608150]	N
968	chr7	50225390	50225391	rs7805803	21116278	Furney SJ	2010-11-30	Mol Psychiatry	Genome-wide association with MRI atrophy measures as a quantitative trait locus for Alzheimer's disease.	Total ventricular volume (Alzheimer's disease interaction)	424 European ancestry mild cognitive impairment cases, 236 European ancestry Alzheimer's disease cases, 279 European ancestry controls	NA	7p12.2	ZPBP	rs7805803-?	NR	9E-6		0.004	[NR] unit decrease	Illumina [478011]	N
968	chr7	50228288	50228289	rs6961138	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	334,468 European ancestry, NR ancestry individuals	NA	7p12.2		rs6961138-?	NR	5E-8				Affymetrix [NR] (imputed)	N
968	chr7	50228288	50228289	rs6961138	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	7p12.2		rs6961138-G	0.413	3E-10				Affymetrix [10369434] (imputed)	N
968	chr7	50228697	50228698	rs921916	19838195	Gateva V	2009-11-01	Nat Genet	A large-scale replication study identifies TNIP1, PRDM1, JAZF1, UHRF1BP1 and IL10 as risk loci for systemic lupus erythematosus.	Systemic lupus erythematosus	1,310 European ancestry cases, 7,859 European ancestry controls	1,963 European ancestry cases, 4,329 European ancestry controls	7p12.2	IKZF1	rs921916-C	0.18	2E-6		1.15	[1.07-1.23]	Illumina [~ 2100000] (imputed)	N
968	chr7	50237783	50237784	rs7791992	29899525	Klimentidis YC	2018-06-13	Int J Obes (Lond)	Genome-wide association study of habitual physical activity in over 377,000 UK Biobank participants identifies multiple variants including CADM2 and APOE.	Moderate to vigorous physical activity levels	377,234 European ancestry individuals	NA	7p12.2	C7orf72, SPATA48	rs7791992-C	0.41	6E-10		0.014	unit decrease	Affymetrix [11800000] (imputed)	N
968	chr7	50239879	50239880	rs10230723	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	7p12.2	C7orf72	rs10230723-A	NR	8E-11		1.0876	NR	Affymetrix, Illumina [8278136] (imputed)	N
968	chr7	50252407	50252408	rs57453899	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	7p12.2		rs57453899-?	NR	1E-11				NR [~ 8900000] (imputed)	N
968	chr7	50253896	50253897	rs17664743	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	7p12.2	C7orf72, IKZF1	rs17664743-A	0.2	6E-11		1.042	[1.03-1.05]	Affymetrix, Illumina [8307659] (imputed)	N
968	chr7	50253896	50253897	rs17664743	23817569	Hinds DA	2013-06-30	Nat Genet	A genome-wide association meta-analysis of self-reported allergy identifies shared and allergy-specific susceptibility loci.	Self-reported allergy	53,862 European ancestry individuals	NA	7p12.2	intergenic	rs17664743-A	0.2244	5E-6		0.0665	[0.038-0.095] unit increase	Illumina [2400000] (imputed)	N
968	chr7	50257702	50257703	rs11769630	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	7p12.2		rs11769630-A	0.074364	1E-16		0.03581924	[0.027-0.044] unit increase	Affymetrix [93095623] (imputed)	N
968	chr7	50257702	50257703	rs11769630	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	7p12.2		rs11769630-A	0.07447	5E-35		0.0526118	[0.044-0.061] unit increase	Affymetrix [93095623] (imputed)	N
968	chr7	50257702	50257703	rs11769630	31624269	Terao C	2019-10-17	Nat Commun	GWAS of mosaic loss of chromosome Y highlights genetic effects on blood cell differentiation.	Mosaic loss of chromosome Y (Y chromosome dosage)	95,380 Japanese men	NA	7p12.2	C7orf72, IKZF1	rs11769630-A	0.13	4E-19		0.057	NR unit decrease	Illumina [9591901] (imputed)	N
968	chr7	50257702	50257703	rs11769630	31624269	Terao C	2019-10-17	Nat Commun	GWAS of mosaic loss of chromosome Y highlights genetic effects on blood cell differentiation.	Mosaic loss of chromosome Y (Y chromosome dosage)	205,011 men	NA	7p12.2	C7orf72, IKZF1	rs11769630-A	0.07	4E-21		0.021	unit increase	NR [NR]	N
968	chr7	50257702	50257703	rs11769630	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	7p12.2	intergenic	rs11769630-A	0.0748	7E-9		0.04017788	[0.027-0.054] unit increase	Affymetrix [~ 2500000] (imputed)	N
968	chr7	50257702	50257703	rs11769630	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	7p12.2	intergenic	rs11769630-A	0.0748	3E-10		0.04364357	[0.03-0.057] unit increase	Affymetrix [~ 2500000] (imputed)	N
968	chr7	50257702	50257703	rs11769630	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	7p12.2	intergenic	rs11769630-A	0.0748	1E-14		0.0532621	[0.04-0.067] unit increase	Affymetrix [~ 2500000] (imputed)	N
968	chr7	50257702	50257703	rs11769630	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	7p12.2	intergenic	rs11769630-A	0.0748	6E-10		0.04289326	[0.029-0.056] unit increase	Affymetrix [~ 2500000] (imputed)	N
968	chr7	50257702	50257703	rs11769630	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	7p12.2	intergenic	rs11769630-A	0.0748	2E-54		0.1076488	[0.094-0.121] unit increase	Affymetrix [~ 2500000] (imputed)	N
968	chr7	50257702	50257703	rs11769630	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	7p12.2	intergenic	rs11769630-A	0.0748	4E-9		0.04102118	[0.027-0.055] unit increase	Affymetrix [~ 2500000] (imputed)	N
968	chr7	50258312	50258313	rs1870028	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	7p12.2	intergenic	rs1870028-T	0.0738	4E-60		0.113312	[0.1-0.127] unit decrease	Affymetrix [~ 2500000] (imputed)	N
968	chr7	50258478	50258479	rs4598207	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	133,321 East Asian ancestry individuals	NA	7p12.2		rs4598207-T	0.432346	7E-17		0.0323155	[0.025-0.04] unit decrease	Illumina [13477433] (imputed)	N
968	chr7	50258478	50258479	rs4598207	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum total protein level	113,509 Japanese ancestry individuals	NA	7p12.2	C7orf72, IKZF1	rs4598207-?	NR	1E-10		0.02825	[0.02-0.037] unit decrease novel	Illumina [6108953] (imputed)	N
968	chr7	50258478	50258479	rs4598207	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Non-albumin protein levels	98,538 Japanese ancestry individuals	NA	7p12.2	C7orf72, IKZF1	rs4598207-?	NR	1E-23		0.04723	[0.038-0.056] unit decrease novel	Illumina [6108953] (imputed)	N
968	chr7	50258478	50258479	rs4598207	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Aspartate aminotransferase levels	134,154 Japanese ancestry individuals	NA	7p12.2	C7orf72, IKZF1	rs4598207-?	NR	3E-8		0.02171	[0.014-0.029] unit decrease novel	Illumina [6108953] (imputed)	N
968	chr7	50258478	50258479	rs4598207	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Albumin-globulin ratio	98,626 Japanese ancestry individuals	NA	7p12.2	C7orf72, IKZF1	rs4598207-?	NR	5E-23		0.04649	[0.037-0.056] unit increase novel	Illumina [6108953] (imputed)	N
968	chr7	50260488	50260489	rs76707602	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	7p12.2	NR	rs76707602-A	NR	5E-13		0.05	[0.036-0.064] unit increase	Affymetrix [9000000] (imputed)	N
968	chr7	50266633	50266634	rs62445347	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	7p12.2	intergenic	rs62445347-C	0.1166	5E-13		0.04097526	[0.03-0.052] unit increase	Affymetrix [~ 2500000] (imputed)	N
968	chr7	50267314	50267315	rs2366296	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	334,468 European ancestry, NR ancestry individuals	NA	7p12.2		rs2366296-?	NR	5E-8				Affymetrix [NR] (imputed)	N
968	chr7	50269671	50269672	rs1456893	18587394	Barrett JC	2008-06-29	Nat Genet	Genome-wide association defines more than 30 distinct susceptibility loci for Crohn's disease.	Crohn's disease	3,230 European ancestry cases, 4,829 European ancestry controls	1,339 European ancestry trios, 2,325 European ancestry cases, 1,809 European ancestry controls	7p12.2	intergenic	rs1456893-A	0.68	5E-9		1.2	[NR]	Affymetrix, Illumina [635547] (imputed)	N
968	chr7	50270104	50270105	rs2168589	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	7p12.2		rs2168589-A	NR	2E-125		0.051	[0.047-0.055] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
968	chr7	50271063	50271064	rs34767118	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	7p12.2	C7orf72	rs34767118-A	0.674082	1E-15		0.0168906	[0.013-0.021] unit decrease	Affymetrix [NR] (imputed)	N
968	chr7	50271498	50271499	rs11773763	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD62L on CD62L+ plasmacytoid Dendritic Cell	2,872 Sardinian (founder/genetic isolate) ancestry individuals	NA	7p12.2		rs11773763-T	0.2587	7E-10		0.1856	[0.13-0.24] unit decrease	Illumina [17926607] (imputed)	N
968	chr7	50273158	50273159	rs186278057	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	7p12.2		rs186278057-T	0.015182	6E-10		0.057931542	[0.04-0.076] unit decrease	Affymetrix [93095623] (imputed)	N
968	chr7	50273158	50273159	rs186278057	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	7p12.2	C7orf72, IKZF1	rs186278057-T	0.015	1E-7	(women)	0.103471	[0.065-0.142] unit increase	Illumina [13520550] (imputed)	N
968	chr7	50284556	50284557	rs76641566	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	7p12.2		rs76641566-A	0.07453	9E-14		0.032124393	[0.024-0.041] unit increase	Affymetrix [93095623] (imputed)	N
968	chr7	50284556	50284557	rs76641566	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	7p12.2		rs76641566-A	0.074469	2E-34		0.05925925	[0.05-0.069] unit decrease	Affymetrix [93095623] (imputed)	N
968	chr7	50284556	50284557	rs76641566	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	7p12.2		rs76641566-A	0.074472	2E-24		0.048329536	[0.039-0.058] unit decrease	Affymetrix [93095623] (imputed)	N
968	chr7	50284556	50284557	rs76641566	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	7p12.2	intergenic	rs76641566-A	0.0749	7E-9		0.03944716	[0.026-0.053] unit increase	Affymetrix [~ 2500000] (imputed)	N
968	chr7	50289668	50289669	rs55935382	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	7p12.2	IKZF1	rs55935382-C	0.674976	6E-18		0.0176192	[0.014-0.022] unit decrease	Affymetrix [NR] (imputed)	N
968	chr7	50289668	50289669	rs55935382	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Total cholesterol levels	128,305 Japanese ancestry individuals	NA	7p12.2	C7orf72, IKZF1	rs55935382-?	NR	8E-9		0.02268	[0.015-0.03] unit increase novel	Illumina [6108953] (imputed)	N
968	chr7	50295305	50295306	rs60969753	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	135,808 East Asian ancestry individuals	NA	7p12.2		rs60969753-C	0.433415	1E-8		0.0206392	[0.014-0.028] unit increase	Illumina [13476599] (imputed)	N
968	chr7	50299076	50299077	rs11185602	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	High density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	7p12.2	C7orf72, IKZF1	rs11185602-?		2E-9		0.0266	[0.018-0.035] unit increase	Illumina [31500000] (imputed)	N
968	chr7	50299076	50299077	rs11185602	26663301	Lessard CJ	2016-05-01	Arthritis Rheumatol	Identification of a Systemic Lupus Erythematosus Risk Locus Spanning ATG16L2, FCHSD2, and P2RY2 in Koreans.	Systemic lupus erythematosus	1,174 Korean ancestry cases, 4,246 Korean ancestry controls	739 Korean ancestry cases,  677 Chinese ancestry cases,  436 Korean ancestry controls, 709 Chinese ancestry controls	7p12.2	IKZF1, C7orf72	rs11185602-?	NR	2E-16		1.5151515	[1.37-1.67]	Illumina [NR]	N
968	chr7	50304081	50304082	rs17552787	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	7p12.2		rs17552787-T	0.32695300000000005	9E-44		1.0644168	[1.05-1.08]	Affymetrix, Illumina [9851866] (imputed)	N
968	chr7	50304460	50304461	rs1456896	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	7p12.2		rs1456896-T	NR	2E-16		0.0167	[0.013-0.021] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
968	chr7	50304460	50304461	rs1456896	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	7p12.2		rs1456896-T	NR	3E-25		0.023	[0.019-0.027] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
968	chr7	50304460	50304461	rs1456896	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p12.2	NR	rs1456896-T	0.637986	2E-18				Affymetrix, Illumina [24649327] (imputed)	N
968	chr7	50304460	50304461	rs1456896	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	7p12.2		rs1456896-?	NR	6E-23				NR [~ 8900000] (imputed)	N
968	chr7	50304460	50304461	rs1456896	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	7p12.2	C7orf72, ZPBP	rs1456896-?		5E-11				Illumina [9725440] (imputed)	N
968	chr7	50304460	50304461	rs1456896	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	7p12.2	C7orf72, ZPBP	rs1456896-?		9E-12				Illumina [9560910] (imputed)	N
968	chr7	50304460	50304461	rs1456896	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	7p12.2	NR	rs1456896-A	0.69	3E-13	(EA)	1.0815443		Affymetrix, Illumina [~ 9000000] (imputed)	N
968	chr7	50304460	50304461	rs1456896	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	7p12.2	NR	rs1456896-A	0.69	1E-13	(EA)	1.1026409	[1.08-1.13]	Affymetrix, Illumina [~ 9000000] (imputed)	N
968	chr7	50304460	50304461	rs1456896	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	7p12.2	ZPBP, IKZF1	rs1456896-T	0.688	7E-15		1.088	[1.055-1.123]	Affymetrix, Illumina [1230000] (imputed)	N
968	chr7	50304460	50304461	rs1456896	21102463	Franke A	2010-11-21	Nat Genet	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry trios	7p12.2	ZPBP, IKZF1, FIGNL1	rs1456896-T	0.69	1E-8		1.14	[1.09-1.20]	Affymetrix, Illumina [953241] (imputed)	N
968	chr7	50305012	50305013	rs71753197	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	7p12.2	NR	rs71753197-T	0.639798	3E-17		0.019775629	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
968	chr7	50305012	50305013	rs71753197	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	7p12.2		rs71753197-T	0.639742	1E-16		0.019743586	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
968	chr7	50305862	50305863	rs4917014	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	7p12.2	NR	rs4917014-G	NR	1E-24		0.0275	[0.022-0.033] unit decrease	Affymetrix [9000000] (imputed)	N
968	chr7	50305862	50305863	rs4917014	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	7p12.2	NR	rs4917014-G	NR	2E-46		0.0385	[0.033-0.044] unit decrease	Affymetrix [9000000] (imputed)	N
968	chr7	50305862	50305863	rs4917014	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	7p12.2	NR	rs4917014-G	NR	7E-13		0.0193	[0.014-0.025] unit increase	Affymetrix [9000000] (imputed)	N
968	chr7	50305862	50305863	rs4917014	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	7p12.2	NR	rs4917014-G	NR	2E-11		0.0182	[0.013-0.023] unit increase	Affymetrix [9000000] (imputed)	N
968	chr7	50305862	50305863	rs4917014	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7p12.2	NR	rs4917014-T	NR	4E-8		0.02	unit decrease	Affymetrix [at least 7091467] (imputed)	N
968	chr7	50305862	50305863	rs4917014	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7p12.2	NR	rs4917014-T	0.672	2E-6	(EA)	0.019	unit decrease	Affymetrix [at least 7091467] (imputed)	N
968	chr7	50305862	50305863	rs4917014	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	7p12.2	C7orf72, IKZF1	rs4917014-?	NR	3E-14		1.2048193	[1.14-1.27]	Illumina [at least 5000000] (imputed)	N
968	chr7	50305862	50305863	rs4917014	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	HDL cholesterol levels	34,930 East Asian ancestry individuals, 187,167 European ancestry individuals	8,741 Chinese ancestry individuals	7p12.2	IKZF1	rs4917014-T	0.66	9E-11	(Trans-ethnic initial)	0.0222	[0.015-0.029] unit decrease (EA Beta values)	Affymetrix, Illumina [~ 1900000] (imputed)	N
968	chr7	50305862	50305863	rs4917014	27399966	Morris DL	2016-07-11	Nat Genet	Genome-wide association meta-analysis in Chinese and European individuals identifies ten new loci associated with systemic lupus erythematosus.	Systemic lupus erythematosus	1,659 Chinese ancestry cases, 3,398 Chinese ancestry controls, 4,036 European ancestry cases, 6,959 European ancestry controls	3,043 Chinese ancestry cases, 5,074 Chinese ancestry controls, 2,643 European ancestry cases, 9,032 European ancestry controls	7p12.2	IKZF1	rs4917014-?	0.299	3E-6	(Chinese)	1.26	[NR]	NR [6344733] (imputed)	N
968	chr7	50305862	50305863	rs4917014	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	2,018 European ancestry cases, 6,925 European ancestry controls	7p12.2	IKZF1	rs4917014-T		6E-14		1.18	[1.13-1.24]	Illumina [644674]	N
968	chr7	50305862	50305863	rs4917014	25672763	Ueta M	2015-02-08	J Allergy Clin Immunol	IKZF1, a new susceptibility gene for cold medicine-related Stevens-Johnson syndrome/toxic epidermal necrolysis with severe mucosal involvement.	Cold medicine-related Stevens-Johnson syndrome/toxic epidermal necrolysis (SJS/TEN) with severe mucosal involvement	117 Japanese ancestry cases, 691 Japanese ancestry controls	43 East Asian ancestry cases, 278 East Asian ancestry controls, 20 Indian ancestry cases, 56 Indian ancestry controls, 39 Brazilian ancestry cases, 135 Brazilian ancestry controls	7p12.2	IKZF1	rs4917014-?		8E-11		2.0	[1.43-2.50]	Affymetrix [449205]	N
968	chr7	50305862	50305863	rs4917014	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	7p12.2	IKZF1	rs4917014-G	0.32	1E-8		0.022	[NR] unit increase	NR [NR] (imputed)	N
968	chr7	50305862	50305863	rs4917014	19838193	Han JW	2009-10-18	Nat Genet	Genome-wide association study in a Chinese Han population identifies nine new susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	1,047 Han Chinese ancestry cases, 1,205 Han Chinese ancestry controls	3,152 Han Chinese ancestry cases, 7,050 Han Chinese ancestry controls	7p12.2	IKZF1	rs4917014-A	0.68	3E-23		1.39	[1.30-1.47]	Illumina [493955]	N
968	chr7	50306779	50306780	rs9656588	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	7p12.2	NR	rs9656588-C	0.671533	1E-19		0.017716	[0.014-0.022] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
968	chr7	50306809	50306810	rs11185603	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	NA	7p12.2	IKZF1	rs11185603-C		4E-7		1.15	[NR]	Illumina [> 644674] (imputed)	N
968	chr7	50307333	50307334	rs4385425	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	7p12.2		rs4385425-A	0.678	1E-57				Affymetrix [10369434] (imputed)	N
968	chr7	50307333	50307334	rs4385425	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	7p12.2		rs4385425-A	0.678	7E-76				Affymetrix [10369434] (imputed)	N
968	chr7	50307333	50307334	rs4385425	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	7p12.2	NR	rs4385425-G	0.322844	2E-11		0.0161289	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
968	chr7	50307333	50307334	rs4385425	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	7p12.2	NR	rs4385425-G	0.322847	4E-12		0.016629983	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
968	chr7	50307333	50307334	rs4385425	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	7p12.2		rs4385425-G	0.322922	3E-72		0.050065055	[0.045-0.056] unit decrease	Affymetrix [93095623] (imputed)	N
968	chr7	50307333	50307334	rs4385425	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	7p12.2		rs4385425-G	0.322936	6E-50		0.040593274	[0.035-0.046] unit decrease	Affymetrix [93095623] (imputed)	N
968	chr7	50307333	50307334	rs4385425	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	7p12.2		rs4385425-G	0.322941	2E-9		0.014223646	[0.0095-0.0189] unit increase	Affymetrix [93095623] (imputed)	N
968	chr7	50307333	50307334	rs4385425	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	7p12.2		rs4385425-G	0.32294	4E-10		0.014882807	[0.01-0.02] unit increase	Affymetrix [93095623] (imputed)	N
968	chr7	50307333	50307334	rs4385425	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p12.2	NR	rs4385425-G	0.353954	8E-214				Affymetrix, Illumina [23467995] (imputed)	N
968	chr7	50307333	50307334	rs4385425	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	7p12.2	NR	rs4385425-G	0.323914	1E-198		0.060104	[0.056-0.064] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
968	chr7	50307333	50307334	rs4385425	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	7p12.2	intergenic	rs4385425-G	0.3211	5E-82		0.07325065	[0.066-0.081] unit decrease	Affymetrix [~ 2500000] (imputed)	N
968	chr7	50307333	50307334	rs4385425	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	7p12.2	intergenic	rs4385425-G	0.3212	2E-50		0.05713407	[0.05-0.065] unit decrease	Affymetrix [~ 2500000] (imputed)	N
968	chr7	50307333	50307334	rs4385425	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	7p12.2	intergenic	rs4385425-G	0.3211	9E-71		0.0681105	[0.061-0.076] unit increase	Affymetrix [~ 2500000] (imputed)	N
968	chr7	50307709	50307710	rs876036	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Plasmacytoid Dendritic Cell %Dendritic Cell	3,410 Sardinian (founder/genetic isolate) ancestry individuals	NA	7p12.2		rs876036-C	0.26452	2E-10		0.1835	[0.13-0.24] unit decrease	Illumina [18351549] (imputed)	N
968	chr7	50307709	50307710	rs876036	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CX3CR1 on CD14- CD16-	3,590 Sardinian (founder/genetic isolate) ancestry individuals	NA	7p12.2		rs876036-C	0.25891	5E-9		0.1655	[0.11-0.22] unit increase	Illumina [18203344] (imputed)	N
968	chr7	50307709	50307710	rs876036	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD33- HLA DR+ Absolute Count	1,858 Sardinian (founder/genetic isolate) ancestry individuals	NA	7p12.2		rs876036-C	0.26346	1E-11		0.2533	[0.18-0.33] unit decrease	Illumina [17203588] (imputed)	N
968	chr7	50307709	50307710	rs876036	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	7p12.2	AC020743.4	rs876036-C	0.317	6E-14	(Leukocyte immunoglobulin-like receptor subfamily A member 4, LILRA4.8299.66.3)	0.2	[0.14-0.26] unit decrease	Affymetrix [10572788] (imputed)	N
968	chr7	50308526	50308527	rs876038	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	7p12.2		rs876038-T	NR	1E-38		0.0286	[0.024-0.033] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
968	chr7	50308526	50308527	rs876038	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	7p12.2		rs876038-T	NR	1E-16		0.018	[0.014-0.022] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
968	chr7	50308691	50308692	rs876037	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	7p12.2	C7orf72, IKZF1	rs876037-T	0.68	1E-11		1.06	[1.05-1.07]	Illumina [at least 560000] (imputed)	N
968	chr7	50308691	50308692	rs876037	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	7p12.2	C7orf72, IKZF1	rs876037-?	NR	1E-11		1.061	[1.043-1.079]	Illumina [13757430] (imputed)	N
968	chr7	50308810	50308811	rs876039	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Plasmacytoid Dendritic Cell Absolute Count	3,374 Sardinian (founder/genetic isolate) ancestry individuals	NA	7p12.2		rs876039-C	0.26186	1E-12		0.1971	[0.14-0.25] unit decrease	Illumina [18332528] (imputed)	N
968	chr7	50309889	50309890	rs62447171	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	7p12.2		rs62447171-A	NR	7E-11		0.014	[0.0099-0.0181] unit increase	Affymetrix, Illumina [20536134] (imputed)	N
968	chr7	50309889	50309890	rs62447171	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Total cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	7p12.2	C7orf72, IKZF1	rs62447171-?		1E-8		0.0206	[0.014-0.028] unit decrease	Illumina [31500000] (imputed)	N
968	chr7	50309889	50309890	rs62447171	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	7p12.2	NR	rs62447171-A	0.292	9E-60		0.767	[0.74-0.8]	Illumina [11270530] (imputed)	N
968	chr7	50309889	50309890	rs62447171	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD80 on plasmacytoid Dendritic Cell	2,871 Sardinian (founder/genetic isolate) ancestry individuals	NA	7p12.2		rs62447171-A	0.24244	3E-10		0.2093	[0.14-0.27] unit decrease	Illumina [17926466] (imputed)	N
968	chr7	50309889	50309890	rs62447171	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD80 on CD62L+ plasmacytoid Dendritic Cell	2,871 Sardinian (founder/genetic isolate) ancestry individuals	NA	7p12.2		rs62447171-A	0.24244	3E-10		0.2089	[0.14-0.27] unit decrease	Illumina [17926466] (imputed)	N
968	chr7	50309889	50309890	rs62447171	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD123 on plasmacytoid Dendritic Cell	2,872 Sardinian (founder/genetic isolate) ancestry individuals	NA	7p12.2		rs62447171-A	0.2427	5E-11		0.2192	[0.15-0.28] unit decrease	Illumina [17926607] (imputed)	N
968	chr7	50309889	50309890	rs62447171	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD123 on CD62L+ plasmacytoid Dendritic Cell	2,872 Sardinian (founder/genetic isolate) ancestry individuals	NA	7p12.2		rs62447171-A	0.2427	5E-11		0.2184	[0.15-0.28] unit decrease	Illumina [17926607] (imputed)	N
968	chr7	50309889	50309890	rs62447171	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	7p12.2	C7orf72, IKZF1	rs62447171-G	0.736	1E-8		0.0337084	[0.022-0.045] unit increase	Illumina [13520550] (imputed)	N
968	chr7	50313351	50313352	rs10276619	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	95,119 East Asian ancestry individuals	NA	7p12.2		rs10276619-A	0.553278	2E-18		0.0385257	[0.03-0.047] unit decrease	Illumina [13471440] (imputed)	N
968	chr7	50313351	50313352	rs10276619	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	88,929 East Asian ancestry individuals	NA	7p12.2	NR	rs10276619-G	0.447802	3E-21		0.04508	[0.036-0.054] SD units increase	Affymetrix, Illumina [16289044] (imputed)	N
968	chr7	50313351	50313352	rs10276619	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Monocyte count	62,076 Japanese ancestry individuals	NA	7p12.2	C7orf72, IKZF1	rs10276619-?	NR	1E-10		0.03668	[0.026-0.048] unit decrease novel	Illumina [6108953] (imputed)	N
968	chr7	50313351	50313352	rs10276619	23273568	Yang W	2012-12-27	Am J Hum Genet	Meta-analysis followed by replication identifies loci in or near CDKN1B, TET3, CD80, DRAM1, and ARID5B as associated with systemic lupus erythematosus in Asians.	Systemic lupus erythematosus	1,656 Han Chinese ancestry cases, 3,394 Han Chinese ancestry controls	3,256 Han Chinese ancestry cases, 5,667 Han Chinese ancestry controls, 453 Thai ancestry cases, 963 Thai ancestry controls	7p12.2	IKZF1	rs10276619-G	0.63	6E-6		1.1765		Illumina [2100739] (imputed)	N
968	chr7	50313351	50313352	rs10276619	19668339	Potkin SG	2009-08-07	PLoS One	Hippocampal atrophy as a quantitative trait in a genome-wide association study identifying novel susceptibility genes for Alzheimer's disease.	Hippocampal atrophy	162 European ancestry cases, 192 European ancestry controls, 7 African American cases, 14 African American controls, 1 Asian ancestry cases, 3 Asian ancestry controls, 2 cases	NA	7p12.2	IKZF1	rs10276619-?	NR	3E-6				Illumina [516645]	N
968	chr7	50315358	50315359	rs80086254	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	7p12.2	AC020743.4	rs80086254-A	0.015255	3E-12		0.06353067	[0.046-0.081] unit increase	Affymetrix [93095623] (imputed)	N
968	chr7	50318307	50318308	rs17552904	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	SSC-A on plasmacytoid Dendritic Cell	2,872 Sardinian (founder/genetic isolate) ancestry individuals	NA	7p12.2		rs17552904-T	0.24478	1E-8		0.1851	[0.12-0.25] unit decrease	Illumina [17926607] (imputed)	N
968	chr7	50318307	50318308	rs17552904	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD45 on CD33- HLA DR+	1,635 Sardinian (founder/genetic isolate) ancestry individuals	NA	7p12.2		rs17552904-T	0.2549	9E-10		0.2523	[0.17-0.33] unit decrease	Illumina [16999305] (imputed)	N
968	chr7	50318307	50318308	rs17552904	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	7p12.2	C7orf72, IKZF1	rs17552904-?	NR	1E-6	(AA)	1.4492754	[1.25-1.69]	Illumina [at least 5000000] (imputed)	N
968	chr7	50319348	50319349	rs4917015	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	74,970 East Asian ancestry individuals	NA	7p12.2		rs4917015-T	0.448457	2E-9		0.0283187	[0.019-0.038] unit increase	Illumina [13465896] (imputed)	N
968	chr7	50319806	50319807	rs1026422	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	High density lipoprotein cholesterol levels	70,657 Japanese ancestry individuals	NA	7p12.2	C7orf72, IKZF1	rs1026422-?	NR	5E-10		0.03266	[0.022-0.043] unit increase novel	Illumina [6108953] (imputed)	N
968	chr7	50320927	50320928	rs62447173	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	334,468 European ancestry, NR ancestry individuals	NA	7p12.2		rs62447173-?	NR	5E-8				Affymetrix [NR] (imputed)	N
968	chr7	50320927	50320928	rs62447173	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	7p12.2		rs62447173-C	0.934	6E-26				Affymetrix [10369434] (imputed)	N
968	chr7	50323173	50323174	rs4917129	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	7p12.2	AC020743.4	rs4917129-?	NR	4E-12	(subset analysis)			Illumina [130052]	N
968	chr7	50324651	50324652	rs4917131	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	7p12.2		rs4917131-G	0.808449	3E-33		0.036390595	[0.03-0.042] unit decrease	Affymetrix [93095623] (imputed)	N
968	chr7	50324651	50324652	rs4917131	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	7p12.2		rs4917131-A	0.191521	7E-20		0.027654413	[0.022-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
968	chr7	50324651	50324652	rs4917131	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	7p12.2	intergenic	rs4917131-G	0.807	5E-36		0.057578	[0.049-0.067] unit decrease	Affymetrix [~ 2500000] (imputed)	N
968	chr7	50324651	50324652	rs4917131	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	7p12.2	intergenic	rs4917131-G	0.807	3E-29		0.0517505	[0.043-0.061] unit increase	Affymetrix [~ 2500000] (imputed)	N
968	chr7	50325566	50325567	rs201847125	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	7p12.2	IKZF1	rs201847125-G	0.7	1E-11		1.1		Illumina [161311]	N
968	chr7	50325716	50325717	rs716719	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	7p12.2	NR	rs716719-C	0.698424	7E-14		0.015857	[0.012-0.02] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
968	chr7	50325814	50325815	rs2085423	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (multivariate analysis)	477,968 European ancestry individuals	NA	7p12.2	C7orf72, IKZF1	rs2085423-A	0.248	4E-13		0.035	[0.025-0.045] unit decrease	NR [NR] (imputed)	N
968	chr7	50325814	50325815	rs2085423	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (age of onset)	117,130 European ancestry individuals	NA	7p12.2	C7orf72, IKZF1	rs2085423-A	0.248	4E-13		0.035	[0.025-0.045] unit decrease	NR [7647814] (imputed)	N
968	chr7	50325814	50325815	rs2085423	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	7p12.2	Intergenic	rs2085423-G	NR	1E-6		0.0199411	[0.012-0.028] unit increase	Illumina [13519193] (imputed)	N
968	chr7	50325814	50325815	rs2085423	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	7p12.2	C7orf72, IKZF1	rs2085423-G	0.742	1E-7		0.0194518	[0.012-0.027] unit increase	Illumina [13520550] (imputed)	N
968	chr7	50325814	50325815	rs2085423	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	7p12.2	C7orf72, IKZF1	rs2085423-G	0.742	3E-12		0.0300998	[0.022-0.039] unit increase	Illumina [13520550] (imputed)	N
968	chr7	50326025	50326026	rs2085422	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	7p12.2		rs2085422-G	NR	2E-24		0.019	[0.015-0.023] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
968	chr7	50326025	50326026	rs2085422	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	7p12.2		rs2085422-A	0.27	6E-9				Affymetrix [10369434] (imputed)	N
968	chr7	50326025	50326026	rs2085422	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	7p12.2		rs2085422-G	0.730829	7E-23		0.024804864	[0.02-0.03] unit increase	Affymetrix [93095623] (imputed)	N
968	chr7	50326025	50326026	rs2085422	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	7p12.2		rs2085422-?	NR	5E-28				NR [~ 8900000] (imputed)	N
969	chr7	50332195	50332196	rs10239000	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	7p12.2	NR	rs10239000-A	0.242	2E-25		1.189	[1.16-1.22]	Illumina [11270530] (imputed)	N
969	chr7	50332195	50332196	rs10239000	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	7p12.2		rs10239000-G	0.756257	2E-21		0.024867672	[0.02-0.03] unit increase	Affymetrix [93095623] (imputed)	N
969	chr7	50335231	50335232	rs4917017	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p12.2	NR	rs4917017-G	0.692486	3E-12				Affymetrix, Illumina [17210439] (imputed)	N
969	chr7	50335231	50335232	rs4917017	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	7p12.2	NR	rs4917017-G	0.70576580729862	2E-7	(IGP66)	0.1816	[0.11-0.25] unit increase	Illumina [~ 2500000] (imputed)	N
969	chr7	50335231	50335232	rs4917017	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	7p12.2	NR	rs4917017-G	0.70576580729862	1E-8	(IGP70)	0.1974	[0.13-0.27] unit increase	Illumina [~ 2500000] (imputed)	N
969	chr7	50336550	50336551	rs9886239	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	7p12.2	IKZF1	rs9886239-A	0.67	8E-10				NR [> 9500000] (imputed)	N
969	chr7	50339608	50339609	rs62447179	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking behaviour (cigarettes smoked per day)	up to 377,334 European ancestry individuals	NA	7p12.2	NR	rs62447179-A	0.298	1E-8		0.015267791	[0.01-0.02] unit decrease	NR [~ 10000000] (imputed)	N
969	chr7	50339608	50339609	rs62447179	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Cigarettes smoked per day (MTAG)	up to 403,928 European ancestry individuals	NA	7p12.2	NR	rs62447179-A	0.298	5E-8		0.0130548	[0.0084-0.0177] unit decrease	NR [9732723] (imputed)	N
969	chr7	50342680	50342681	rs145532105	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	7p12.2		rs145532105-G	0.975	4E-24				Affymetrix [10369434] (imputed)	N
969	chr7	50342680	50342681	rs145532105	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	7p12.2		rs145532105-G	0.975	2E-17				Affymetrix [10369434] (imputed)	N
969	chr7	50344076	50344077	rs11765436	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	7p12.2	IKZF1	rs11765436-A	0.333219	4E-11		0.015741974	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
969	chr7	50344543	50344544	rs11506039	31005965	Coltell O	2019-04-21	Am J Clin Nutr	Association between taste perception and adiposity in overweight or obese older subjects with metabolic syndrome and identification of novel taste-related genes.	Bitter taste perception (phenylthiocarbamide) in obesity with metabolic syndrome	372 individuals	NA	7p12.2	IKZF1	rs11506039-G	0.107	8E-6		1.508	[0.86-2.16] unit increase	Illumina [622468]	N
969	chr7	50346133	50346134	rs7781977	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	7p12.2	NR	rs7781977-C	0.695324747663551	5E-7	(IGP45)	0.1658	[0.1-0.23] unit increase	Illumina [~ 2500000] (imputed)	N
969	chr7	50346237	50346238	rs539123094	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	7p12.2	IKZF1	rs539123094-T	0.00299000000000005	2E-10		0.1372846	[0.095-0.179] unit decrease	Affymetrix [93095623] (imputed)	N
969	chr7	50346797	50346798	rs184710845	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	7p12.2	IKZF1	rs184710845-G	0.00437600000000005	2E-12		0.123485185	[0.089-0.158] unit decrease	Affymetrix [93095623] (imputed)	N
969	chr7	50346797	50346798	rs184710845	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	7p12.2	IKZF1	rs184710845-G	0.00438300000000003	2E-9		0.10553771	[0.071-0.14] unit decrease	Affymetrix [93095623] (imputed)	N
969	chr7	50348744	50348745	rs7782210	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	7p12.2	NR	rs7782210-G	0.4071	8E-13	(IgG1 Fn/Bn)	0.2789	[0.2-0.36] unit increase	Affymetrix [up to 18185628] (imputed)	N
969	chr7	50348744	50348745	rs7782210	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	7p12.2	NR	rs7782210-G	0.4071	4E-13	(IgG1_G1N)	0.2826	[0.21-0.36] unit decrease	Affymetrix [up to 18185628] (imputed)	N
969	chr7	50348744	50348745	rs7782210	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	7p12.2	NR	rs7782210-G	0.4071	4E-12	(IgG1 Bn/Fn total)	0.2713	[0.19-0.35] unit decrease	Affymetrix [up to 18185628] (imputed)	N
969	chr7	50348744	50348745	rs7782210	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	7p12.2	NR	rs7782210-G	0.4071	4E-10	(IgG1_G0N)	0.2433	[0.17-0.32] unit decrease	Affymetrix [up to 18185628] (imputed)	N
969	chr7	50348744	50348745	rs7782210	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	7p12.2	NR	rs7782210-G	0.4071	2E-13	(IgG1_G1Nn)	0.2853	[0.21-0.36] unit decrease	Affymetrix [up to 18185628] (imputed)	N
969	chr7	50348744	50348745	rs7782210	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	7p12.2	NR	rs7782210-G	0.4071	1E-12	(IgG1 Bn)	0.2789	[0.2-0.36] unit decrease	Affymetrix [up to 18185628] (imputed)	N
969	chr7	50348744	50348745	rs7782210	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	7p12.2	NR	rs7782210-G	0.4071	1E-12	(IgG1 BG1n/G1n)	0.2777	[0.2-0.35] unit decrease	Affymetrix [up to 18185628] (imputed)	N
969	chr7	50348744	50348745	rs7782210	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	7p12.2	NR	rs7782210-G	0.4071	1E-12	(IgG1 BG0n/G0n)	0.2786	[0.2-0.36] unit decrease	Affymetrix [up to 18185628] (imputed)	N
969	chr7	50348744	50348745	rs7782210	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	7p12.2	NR	rs7782210-G	0.4071	1E-10	(IgG1_G0Nn)	0.2507	[0.17-0.33] unit decrease	Affymetrix [up to 18185628] (imputed)	N
969	chr7	50350266	50350267	rs6583437	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	7p12.2	NR	rs6583437-G	0.637881567834681	5E-9	(IGP60)	0.1862	[0.12-0.25] unit decrease	Illumina [~ 2500000] (imputed)	N
969	chr7	50350266	50350267	rs6583437	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	7p12.2	NR	rs6583437-G	0.637609347358997	1E-8	(IGP6)	0.1817	[0.12-0.24] unit increase	Illumina [~ 2500000] (imputed)	N
969	chr7	50350266	50350267	rs6583437	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	7p12.2	NR	rs6583437-G	0.637533007630161	4E-8	(IGP46)	0.1744	[0.11-0.24] unit increase	Illumina [~ 2500000] (imputed)	N
969	chr7	50350266	50350267	rs6583437	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	7p12.2	NR	rs6583437-G	0.636915159517426	3E-8	(IGP58)	0.1772	[0.11-0.24] unit decrease	Illumina [~ 2500000] (imputed)	N
969	chr7	50350266	50350267	rs6583437	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	7p12.2	NR	rs6583437-G	0.636802753258427	7E-10	(IGP42)	0.197	[0.13-0.26] unit increase	Illumina [~ 2500000] (imputed)	N
969	chr7	50350266	50350267	rs6583437	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	7p12.2	NR	rs6583437-G	0.63670095951417	2E-9	(IGP2)	0.1929	[0.13-0.26] unit increase	Illumina [~ 2500000] (imputed)	N
969	chr7	50350266	50350267	rs6583437	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	7p12.2	NR	rs6583437-G	0.636650594183445	1E-9	(IGP59)	0.1949	[0.13-0.26] unit decrease	Illumina [~ 2500000] (imputed)	N
969	chr7	50350266	50350267	rs6583437	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	7p12.2	NR	rs6583437-G	0.636609333927775	7E-6	(IGP61)	0.143	[0.081-0.205] unit decrease	Illumina [~ 2500000] (imputed)	N
969	chr7	50351603	50351604	rs7797255	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	7p12.2	NR	rs7797255-G	0.4016	1E-8	(IgG1_G1N/IgG1_G1)	0.2227	[0.15-0.3] unit decrease	Affymetrix [up to 18185628] (imputed)	N
969	chr7	50352694	50352695	rs7789913	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	7p12.2	NR	rs7789913-T	NR	6E-16		0.0205	[0.016-0.025] unit increase	Affymetrix [9000000] (imputed)	N
969	chr7	50352694	50352695	rs7789913	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	7p12.2	NR	rs7789913-T	NR	2E-30		0.0291	[0.024-0.034] unit increase	Affymetrix [9000000] (imputed)	N
969	chr7	50353143	50353144	rs7804185	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	7p12.2		rs7804185-C	0.604115	9E-21		1.0413008	[1.03-1.05]	Affymetrix, Illumina [9851866] (imputed)	N
969	chr7	50353143	50353144	rs7804185	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	7p12.2	NR	rs7804185-C	0.4049	2E-9	(IgG1 FBn/Bn total)	0.2374	[0.16-0.31] unit increase	Affymetrix [up to 18185628] (imputed)	N
969	chr7	50353191	50353192	rs10261758	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Rheumatoid arthritis	8,255 European ancestry cases, 409,001 European ancestry controls, 5,348 East Asian ancestry cases, 173,268 East Asian ancestry controls	NA	7p12.2		rs10261758-A	NR	1E-8		0.081	[0.053-0.109] unit decrease	Affymetrix, Illumina [25835038] (imputed)	N
969	chr7	50355206	50355207	rs6421315	32128391	Klaric L	2020-02-19	Sci Adv	Glycosylation of immunoglobulin G is regulated by a large network of genes pleiotropic with inflammatory diseases.	IgG N-glycosylation phenotypes (multivariate analysis)	8,090 European ancestry individuals	2,388 European ancestry individuals	7p12.2	IKZF1	rs6421315-C	0.383	5E-27		0.192	[NR] unit increase	Illumina [up to 741151] (imputed)	N
969	chr7	50355206	50355207	rs6421315	31163085	Sharapov SZ	2019-06-15	Hum Mol Genet	Defining the genetic control of human blood plasma N-glycome using genome-wide association study.	N-glycan levels	2,763 individuals	327 Arab, South Asian and Filipino ancestry individuals, 294 European ancestry individuals, 591 individuals.	7p12.2	IKZF1	rs6421315-G	0.592	7E-11	(plasma glycan peak 60)	0.1884	[0.13-0.24] unit increase	Illumina [8557543] (imputed)	N
969	chr7	50355206	50355207	rs6421315	28878392	Shen X	2017-09-06	Nat Commun	Multivariate discovery and replication of five novel loci associated with Immunoglobulin G N-glycosylation.	IgG sialylation phenotypes (multivariate analysis)	1,960 Orcadian (founder/genetic isolate) individuals	NA	7p12.2	IKZF1	rs6421315-C	0.39	2E-8				Illumina [NR]	N
969	chr7	50355206	50355207	rs6421315	28878392	Shen X	2017-09-06	Nat Commun	Multivariate discovery and replication of five novel loci associated with Immunoglobulin G N-glycosylation.	IgG monogalactosylation phenotypes (multivariate analysis)	1,960 Orcadian (founder/genetic isolate) individuals	NA	7p12.2	IKZF1	rs6421315-C	0.39	3E-6				Illumina [NR]	N
969	chr7	50355206	50355207	rs6421315	28878392	Shen X	2017-09-06	Nat Commun	Multivariate discovery and replication of five novel loci associated with Immunoglobulin G N-glycosylation.	IgG galactosylation phenotypes (multivariate analysis)	1,960 Orcadian (founder/genetic isolate) individuals	NA	7p12.2	IKZF1	rs6421315-C	0.39	1E-8				Illumina [NR]	N
969	chr7	50355206	50355207	rs6421315	28878392	Shen X	2017-09-06	Nat Commun	Multivariate discovery and replication of five novel loci associated with Immunoglobulin G N-glycosylation.	IgG disialylation phenotypes (multivariate analysis)	1,960 Orcadian (founder/genetic isolate) individuals	NA	7p12.2	IKZF1	rs6421315-C	0.39	3E-7				Illumina [NR]	N
969	chr7	50355206	50355207	rs6421315	28878392	Shen X	2017-09-06	Nat Commun	Multivariate discovery and replication of five novel loci associated with Immunoglobulin G N-glycosylation.	IgG digalactosylation phenotypes (multivariate analysis)	1,960 Orcadian (founder/genetic isolate) individuals	NA	7p12.2	IKZF1	rs6421315-C	0.39	2E-7				Illumina [NR]	N
969	chr7	50355206	50355207	rs6421315	28878392	Shen X	2017-09-06	Nat Commun	Multivariate discovery and replication of five novel loci associated with Immunoglobulin G N-glycosylation.	IgG bisecting N-acetyl glucosamine phenotypes (multivariate analysis)	1,960 Orcadian (founder/genetic isolate) individuals	NA	7p12.2	IKZF1	rs6421315-C	0.39	3E-6				Illumina [NR]	N
969	chr7	50355206	50355207	rs6421315	28878392	Shen X	2017-09-06	Nat Commun	Multivariate discovery and replication of five novel loci associated with Immunoglobulin G N-glycosylation.	IgG N-glycosylation phenotypes (multivariate analysis)	1,960 Orcadian (founder/genetic isolate) individuals	NA	7p12.2	IKZF1	rs6421315-C	0.39	2E-7				Illumina [NR]	N
969	chr7	50355206	50355207	rs6421315	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	7p12.2	IKZF1	rs6421315-C	0.368343116206589	8E-12	(IGP62)	0.2202	[0.16-0.28] unit increase	Illumina [~ 2500000] (imputed)	N
969	chr7	50355206	50355207	rs6421315	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	7p12.2	IKZF1	rs6421315-C	0.368316756347439	2E-13	(IGP63)	0.2363	[0.17-0.3] unit increase	Illumina [~ 2500000] (imputed)	N
969	chr7	50355206	50355207	rs6421315	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	7p12.2	IKZF1	rs6421315-C	0.368179075211393	7E-11	(IGP67)	0.2096	[0.15-0.27] unit decrease	Illumina [~ 2500000] (imputed)	N
969	chr7	50355206	50355207	rs6421315	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	7p12.2	IKZF1	rs6421315-C	0.368179075211393	2E-7	(IGP64)	0.1714	[0.11-0.23] unit increase	Illumina [~ 2500000] (imputed)	N
969	chr7	50355206	50355207	rs6421315	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	7p12.2	IKZF1	rs6421315-C	0.368179075211393	1E-8	(IGP71)	0.1829	[0.12-0.25] unit decrease	Illumina [~ 2500000] (imputed)	N
969	chr7	50355206	50355207	rs6421315	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	7p12.2	IKZF1	rs6421315-C	0.368136455031166	7E-6	(IGP5)	0.1445	[0.081-0.208] unit decrease	Illumina [~ 2500000] (imputed)	N
969	chr7	50355206	50355207	rs6421315	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	7p12.2	IKZF1	rs6421315-C	0.368121119768477	5E-7	(IGP65)	0.1615	[0.099-0.224] unit increase	Illumina [~ 2500000] (imputed)	N
969	chr7	50355206	50355207	rs6421315	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	7p12.2	IKZF1	rs6421315-C	0.368120581032947	8E-9	(IGP72)	0.1863	[0.12-0.25] unit increase	Illumina [~ 2500000] (imputed)	N
969	chr7	50360389	50360390	rs7777365	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	7p12.2		rs7777365-A	0.547	5E-19				Affymetrix [10369434] (imputed)	N
969	chr7	50364290	50364291	rs73348111	33979322	Currant H	2021-05-12	PLoS Genet	Genetic variation affects morphological retinal phenotypes extracted from UK Biobank optical coherence tomography images.	Retinal nerve fibre layer thickness or ganglion cell inner plexiform layer thickness (MTAG)	31,434 European ancestry individuals	NA	7p12.2	NR	rs73348111-C	0.01	7E-10		1.12	[0.77-1.47] unit increase	Affymetrix [9231066] (imputed)	N
969	chr7	50364290	50364291	rs73348111	33979322	Currant H	2021-05-12	PLoS Genet	Genetic variation affects morphological retinal phenotypes extracted from UK Biobank optical coherence tomography images.	Retinal nerve fibre layer (RNFL) thickness	31,434 European ancestry individuals	NA	7p12.2	NR	rs73348111-C	0.01	7E-10		1.12	[0.77-1.47] unit increase	Affymetrix [9231066] (imputed)	N
969	chr7	50364625	50364626	rs10230193	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	7p12.2	NR	rs10230193-A	NR	3E-9		0.0161	[0.011-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
969	chr7	50364625	50364626	rs10230193	25524916	Palmer ND	2014-12-18	Diabetes	Genetic Variants Associated With Quantitative Glucose Homeostasis Traits Translate to Type 2 Diabetes in Mexican Americans: The GUARDIAN (Genetics Underlying Diabetes in Hispanics) Consortium.	Glucose homeostasis traits	up to 4,176 Mexican American individuals	NA	7p12.2	IKZF1	rs10230193-?		7E-6	(AIRg)	1.79	[0.75-2.83] unit decrease	Illumina [693128]	N
969	chr7	50370253	50370254	rs149007767	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	7p12.2	IKZF1	rs149007767-T	0.16247	9E-37		0.039631963	[0.033-0.046] unit increase	Affymetrix [93095623] (imputed)	N
969	chr7	50370253	50370254	rs149007767	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	7p12.2	IKZF1	rs149007767-T	0.162444	3E-18		0.027117442	[0.021-0.033] unit increase	Affymetrix [93095623] (imputed)	N
969	chr7	50370253	50370254	rs149007767	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	7p12.2	IKZF1	rs149007767-T	0.162393	8E-167		0.08801053	[0.082-0.094] unit decrease	Affymetrix [93095623] (imputed)	N
969	chr7	50370253	50370254	rs149007767	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	7p12.2	IKZF1	rs149007767-T	0.162446	2E-118		0.07343058	[0.067-0.08] unit decrease	Affymetrix [93095623] (imputed)	N
969	chr7	50370253	50370254	rs149007767	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	7p12.2	IKZF1	rs149007767-T	0.16248	1E-13		0.02302849	[0.017-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
969	chr7	50370253	50370254	rs149007767	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	7p12.2	IKZF1	rs149007767-T	0.162478	5E-23		0.030809728	[0.025-0.037] unit increase	Affymetrix [93095623] (imputed)	N
969	chr7	50370253	50370254	rs149007767	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p12.2	NR	rs149007767-T	0.169334	2E-29				Affymetrix, Illumina [23114412] (imputed)	N
969	chr7	50370253	50370254	rs149007767	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p12.2	NR	rs149007767-T	0.169278	6E-17				Affymetrix, Illumina [19905671] (imputed)	N
969	chr7	50370253	50370254	rs149007767	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	7p12.2	NR	rs149007767-T	0.162151	3E-20		0.026584	[0.021-0.032] SD unit increase	Affymetrix, Illumina [50036608] (imputed)	N
969	chr7	50370253	50370254	rs149007767	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	7p12.2	IKZF1	rs149007767-T	0.1619	9E-13		0.03641274	[0.026-0.046] unit increase	Affymetrix [~ 2500000] (imputed)	N
969	chr7	50370253	50370254	rs149007767	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	7p12.2	IKZF1	rs149007767-T	0.1618	6E-78		0.09516405	[0.085-0.105] unit decrease	Affymetrix [~ 2500000] (imputed)	N
969	chr7	50370253	50370254	rs149007767	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	7p12.2	IKZF1	rs149007767-T	0.1618	1E-54		0.07949155	[0.069-0.089] unit decrease	Affymetrix [~ 2500000] (imputed)	N
969	chr7	50370253	50370254	rs149007767	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	7p12.2	IKZF1	rs149007767-T	0.1618	2E-67		0.08867422	[0.079-0.099] unit increase	Affymetrix [~ 2500000] (imputed)	N
969	chr7	50413916	50413917	rs184035716	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	7p12.2	IKZF1	rs184035716-A	0.004	1E-6		0.3395	[0.2-0.48] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
969	chr7	50417631	50417632	rs62447197	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	7p12.2		rs62447197-A	0.893	4E-28				Affymetrix [10369434] (imputed)	N
969	chr7	50417631	50417632	rs62447197	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	7p12.2		rs62447197-A	0.893	9E-27				Affymetrix [10369434] (imputed)	N
969	chr7	50417631	50417632	rs62447197	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	7p12.2	IKZF1	rs62447197-G	0.106537	8E-20		0.032796346	[0.026-0.04] unit increase	Affymetrix [93095623] (imputed)	N
969	chr7	50418948	50418949	rs12719039	24699409	Prokopenko I	2014-04-03	PLoS Genet	A central role for GRB10 in regulation of islet function in man.	Area under the curve of insulin levels	up to 4,324 European individuals, up to 413 Old Order Amish (founder/genetic isolate) individuals	20,620 European individuals	7p12.2	IKZF1	rs12719039-C	NR	7E-7		0.055	[0.033-0.077] unit decrease	Affymetrix, Illumina [at least 1961018] (imputed)	N
969	chr7	50427981	50427982	rs6592965	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Pyruvate levels	114,749 European ancestry individuals	NA	7p12.2		rs6592965-G	0.542822	3E-9		0.024809	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
969	chr7	50427981	50427982	rs6592965	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	7p12.2		rs6592965-A	NR	7E-100		0.0372	[0.034-0.041] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
969	chr7	50427981	50427982	rs6592965	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	153,512 East Asian ancestry individuals	NA	7p12.2		rs6592965-A	0.314955	7E-27		0.036373	[0.03-0.043] unit decrease	Illumina [13479135] (imputed)	N
969	chr7	50427981	50427982	rs6592965	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	7p12.2		rs6592965-A	NR	4E-11		0.0129	[0.009-0.0168] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
969	chr7	50427981	50427982	rs6592965	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	7p12.2		rs6592965-A	NR	6E-191		0.0599	[0.056-0.064] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
969	chr7	50427981	50427982	rs6592965	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	7p12.2		rs6592965-A	0.313958	1E-38		0.0508264	[0.043-0.058] unit increase	Illumina [13476266] (imputed)	N
969	chr7	50427981	50427982	rs6592965	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	7p12.2		rs6592965-A	NR	1E-139		0.0512	[0.047-0.055] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
969	chr7	50427981	50427982	rs6592965	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	7p12.2		rs6592965-A	0.314033	2E-34		0.048321	[0.041-0.056] unit increase	Illumina [13476299] (imputed)	N
969	chr7	50427981	50427982	rs6592965	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	7p12.2		rs6592965-G	0.546	1E-158		0.3	[-0.32--0.28] % decrease	Affymetrix [NR] (imputed)	N
969	chr7	50427981	50427982	rs6592965	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	7p12.2	IKZF1	rs6592965-A	0.454379	5E-12		0.01558159	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
969	chr7	50427981	50427982	rs6592965	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	7p12.2	IKZF1	rs6592965-A	0.454442	4E-96		0.046070486	[0.042-0.05] unit decrease	Affymetrix [93095623] (imputed)	N
969	chr7	50427981	50427982	rs6592965	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	7p12.2	IKZF1	rs6592965-A	0.454421	5E-22		0.02189443	[0.017-0.026] unit increase	Affymetrix [93095623] (imputed)	N
969	chr7	50427981	50427982	rs6592965	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	7p12.2	IKZF1	rs6592965-A	0.454397	1E-12		0.01617854	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
969	chr7	50427981	50427982	rs6592965	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	7p12.2	IKZF1	rs6592965-A	0.454398	2E-497		0.10902708	[0.1-0.11] unit increase	Affymetrix [93095623] (imputed)	N
969	chr7	50427981	50427982	rs6592965	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	7p12.2	IKZF1	rs6592965-A	0.454487	6E-581		0.11661981	[0.11-0.12] unit increase	Affymetrix [93095623] (imputed)	N
969	chr7	50427981	50427982	rs6592965	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	7p12.2	IKZF1	rs6592965-A	0.454441	1E-219		0.0710097	[0.067-0.075] unit increase	Affymetrix [93095623] (imputed)	N
969	chr7	50427981	50427982	rs6592965	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	7p12.2	IKZF1	rs6592965-A	0.454437	4E-147		0.057311416	[0.053-0.062] unit increase	Affymetrix [93095623] (imputed)	N
969	chr7	50427981	50427982	rs6592965	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	7p12.2	IKZF1	rs6592965-A	0.454394	6E-81		0.043004792	[0.039-0.047] unit increase	Affymetrix [93095623] (imputed)	N
969	chr7	50427981	50427982	rs6592965	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p12.2	NR	rs6592965-A	0.428026	1E-166				Affymetrix, Illumina [24332387] (imputed)	N
969	chr7	50427981	50427982	rs6592965	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	7p12.2	NR	rs6592965-A	0.455856	3E-143		0.048762	[0.045-0.053] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
969	chr7	50427981	50427982	rs6592965	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	150,708 East Asian ancestry individuals	NA	7p12.2	NR	rs6592965-G	0.686712	2E-26		0.042483	[0.035-0.05] SD units increase	Affymetrix, Illumina [16709798] (imputed)	N
969	chr7	50427981	50427982	rs6592965	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p12.2	NR	rs6592965-A	0.428984	5E-18				Affymetrix, Illumina [24588908] (imputed)	N
969	chr7	50427981	50427982	rs6592965	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	7p12.2	NR	rs6592965-A	0.456049	9E-20		0.016786	[0.013-0.02] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
969	chr7	50427981	50427982	rs6592965	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p12.2	NR	rs6592965-A	0.432797	4E-340				Affymetrix, Illumina [24246363] (imputed)	N
969	chr7	50427981	50427982	rs6592965	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	7p12.2	NR	rs6592965-A	0.455863	2E-304		0.06809	[0.065-0.072] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
969	chr7	50427981	50427982	rs6592965	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	121,047 East Asian ancestry individuals	NA	7p12.2	NR	rs6592965-G	0.687173	1E-32		0.053185	[0.044-0.062] SD units decrease	Affymetrix, Illumina [16286195] (imputed)	N
969	chr7	50427981	50427982	rs6592965	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p12.2	NR	rs6592965-A	0.428946	1E-217				Affymetrix, Illumina [20825802] (imputed)	N
969	chr7	50427981	50427982	rs6592965	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	7p12.2	NR	rs6592965-A	0.454676	9E-188		0.056596	[0.053-0.06] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
969	chr7	50427981	50427982	rs6592965	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	119,629 East Asian ancestry individuals	NA	7p12.2	NR	rs6592965-G	0.687168	4E-30		0.051216	[0.042-0.06] SD units decrease	Affymetrix, Illumina [16286228] (imputed)	N
969	chr7	50427981	50427982	rs6592965	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	7p12.2		rs6592965-?	NR	7E-107				NR [~ 8900000] (imputed)	N
969	chr7	50427981	50427982	rs6592965	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	7p12.2		rs6592965-?	NR	8E-169				NR [~ 8900000] (imputed)	N
969	chr7	50427981	50427982	rs6592965	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Red blood cell count	108,794 Japanese ancestry individuals	NA	7p12.2	IKZF1	rs6592965-?	NR	1E-17		0.03984	[0.031-0.049] unit decrease novel	Illumina [6108953] (imputed)	N
969	chr7	50427981	50427982	rs6592965	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular volume	108,256 Japanese ancestry individuals	NA	7p12.2	IKZF1	rs6592965-?	NR	4E-30		0.05302	[0.044-0.062] unit increase novel	Illumina [6108953] (imputed)	N
969	chr7	50427981	50427982	rs6592965	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin	108,054 Japanese ancestry individuals	NA	7p12.2	IKZF1	rs6592965-?	NR	2E-27		0.05042	[0.041-0.06] unit increase novel	Illumina [6108953] (imputed)	N
969	chr7	50427981	50427982	rs6592965	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	7p12.2	IKZF1	rs6592965-A	0.4547	1E-43		0.04951579	[0.043-0.057] unit decrease	Affymetrix [~ 2500000] (imputed)	N
969	chr7	50427981	50427982	rs6592965	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	7p12.2	IKZF1	rs6592965-A	0.4547	4E-81		0.06768027	[0.061-0.075] unit increase	Affymetrix [~ 2500000] (imputed)	N
969	chr7	50427981	50427982	rs6592965	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	7p12.2	IKZF1	rs6592965-A	0.4547	8E-58		0.05703478	[0.05-0.064] unit increase	Affymetrix [~ 2500000] (imputed)	N
969	chr7	50427981	50427982	rs6592965	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	7p12.2	IKZF1	rs6592965-A	0.4546	1E-36		0.04511536	[0.038-0.052] unit increase	Affymetrix [~ 2500000] (imputed)	N
969	chr7	50428427	50428428	rs12718597	19862010	Ganesh SK	2009-10-11	Nat Genet	Multiple loci influence erythrocyte phenotypes in the CHARGE Consortium.	Mean corpuscular volume	24,167 European ancestry individuals	9,456 European ancestry individuals	7p12.2	IKZF1	rs12718597-A	NR	5E-13		0.0	[0.002-0.004] fl increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
969	chr7	50428444	50428445	rs12718598	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Red blood cell count	20,220 Amish, White ancestry individuals, 384 Asian ancestry individuals, 10,747 Black individuals, 13,119 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	7p12.2		rs12718598-C	NR	1E-10		0.02	[0.02-0.02] unit decrease	Illumina [92652022]	N
969	chr7	50428444	50428445	rs12718598	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular volume	22,267 Amish, White ancestry individuals, 447 Asian ancestry individuals, 12,285 Black individuals, 13,831 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	7p12.2		rs12718598-C	NR	6E-19		0.32	[0.24-0.4] unit increase	Illumina [97506867]	N
969	chr7	50428444	50428445	rs12718598	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular hemoglobin	20,714 Amish, White ancestry individuals, 447 Asian ancestry individuals, 11,246 Black individuals, 13,834 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	7p12.2		rs12718598-C	NR	4E-16		0.12	[0.1-0.14] unit increase	Illumina [94681438]	N
969	chr7	50428444	50428445	rs12718598	33536631	Bell S	2021-02-03	Commun Biol	A genome-wide meta-analysis yields 46 new loci associating with biomarkers of iron homeostasis.	Iron status biomarkers (iron levels)	163,511 European ancestry individuals	NA	7p12.2	IKZF1	rs12718598-C	0.463	4E-11		0.027	[0.019-0.034] SD increase	Affymetrix, Illumina [40000000] (imputed)	N
969	chr7	50428444	50428445	rs12718598	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red blood cell count	8,679 African American individuals, 17,412 Hispanic or Latin American individuals, 14,690 European ancestry individuals, 127 Asian ancestry individuals, 20 Native American ancestry individuals, 382 individuals	NA	7p12.2		rs12718598-?	0.5204	8E-12		0.02	[0.014-0.026] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
969	chr7	50428444	50428445	rs12718598	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red blood cell count	17,412 Hispanic or Latin American individuals	NA	7p12.2		rs12718598-?	0.5734	8E-7		0.0219	[0.013-0.031] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
969	chr7	50428444	50428445	rs12718598	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red blood cell count	14,690 European ancestry individuals	NA	7p12.2		rs12718598-?	0.4939	4E-6		0.0202	[0.012-0.029] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
969	chr7	50428444	50428445	rs12718598	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular volume	8,556 African American individuals, 17,141 Hispanic or Latin American individuals, 14,483 European ancestry individuals, 125 Asian ancestry individuals, 594 Native American ancestry individuals, 377 individuals	NA	7p12.2		rs12718598-?	0.5204	1E-15		0.3065	[0.23-0.38] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
969	chr7	50428444	50428445	rs12718598	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular volume	17,141 Hispanic or Latin American individuals	NA	7p12.2		rs12718598-?	0.5734	4E-8		0.3519	[0.23-0.48] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
969	chr7	50428444	50428445	rs12718598	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular volume	14,483 European ancestry individuals	NA	7p12.2		rs12718598-?	0.4939	3E-9		0.3098	[0.21-0.41] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
969	chr7	50428444	50428445	rs12718598	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin	8,694 African American individuals, 17,400 Hispanic or Latin American individuals, 14,693 European ancestry individuals, 127 Asian ancestry individuals, 20 Native American ancestry individuals, 382 individuals	NA	7p12.2		rs12718598-?	0.5204	2E-14		0.1119	[0.083-0.141] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
969	chr7	50428444	50428445	rs12718598	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin	17,400 Hispanic or Latin American individuals	NA	7p12.2		rs12718598-?	0.5734	9E-9		0.1351	[0.089-0.181] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
969	chr7	50428444	50428445	rs12718598	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin	14,693 European ancestry individuals	NA	7p12.2		rs12718598-?	0.4939	9E-8		0.1096	[0.069-0.15] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
969	chr7	50428444	50428445	rs12718598	28453575	Hodonsky CJ	2017-04-28	PLoS Genet	Genome-wide association study of red blood cell traits in Hispanics/Latinos: The Hispanic Community Health Study/Study of Latinos.	Mean corpuscular volume	12,502 Hispanic/Latino individuals	4,772 Hispanic/Latino individuals	7p12.2	IKZF1	rs12718598-T	0.01	2E-7		0.386	[0.24-0.53] fL decrease	Illumina [27801688] (imputed)	N
969	chr7	50428444	50428445	rs12718598	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular volume	up to 29,946 European ancestry individuals, up to 6150 African American individuals, 15,074 East Asian individuals.	16,389 individuals of European and African American ancestry.	7p12.2	IKZF1	rs12718598-?	NR	4E-14				NR [2500000] (imputed)	N
969	chr7	50428444	50428445	rs12718598	23222517	van der Harst P	2012-12-05	Nature	Seventy-five genetic loci influencing the human red blood cell.	Red blood cell traits	62,553 European ancestry individuals, 9,308 South Asian ancestry individuals	63,506 European ancestry individuals	7p12.2	IKZF1	rs12718598-T	0.51	2E-13	(EA, MCV)	0.204	[0.15-0.26] unit decrease	Affymetrix, Illumina, Perlegen [2711806] (imputed)	N
969	chr7	50429441	50429442	rs6976036	34014839	Page GP	2021-05-20	J Clin Invest	Multi-ancestry genome-wide association study identifies 27 loci associated with measures of hemolysis following blood storage.	hemolysis of donated blood (osmotic)	Up to 7,586 non-Hispanic White ancestry individuals, Up to 1,049 East Asian ancestry individuals, Up to 257 South Asian ancestry individuals, Up to 1,046 African Americans individuals, Up to 456 Mexican and Central American Hispanics individuals, Up to 489 Caribbean Island Hispanics, Up to 1,336 individuals	NA	7p12.2	IKZF1	rs6976036-?	NR	2E-8		0.9	NR unit increase	NR [14100000] (imputed)	N
969	chr7	50429441	50429442	rs6976036	34014839	Page GP	2021-05-20	J Clin Invest	Multi-ancestry genome-wide association study identifies 27 loci associated with measures of hemolysis following blood storage.	hemolysis of donated blood (osmotic)	Up to 7,586 non-Hispanic White ancestry individuals	NA	7p12.2	IKZF1	rs6976036-?	NR	5E-8				NR [14100000] (imputed)	N
969	chr7	50430679	50430680	rs567730888	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	7p12.2	IKZF1	rs567730888-T	0.00818799999999997	5E-11		0.082720436	[0.058-0.107] unit decrease	Affymetrix [93095623] (imputed)	N
969	chr7	50436730	50436731	rs78697948	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	7p12.2		rs78697948-A	0.927	5E-23				Affymetrix [10369434] (imputed)	N
969	chr7	50436730	50436731	rs78697948	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	7p12.2		rs78697948-A	0.927	2E-13				Affymetrix [10369434] (imputed)	N
969	chr7	50436730	50436731	rs78697948	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	7p12.2	IKZF1	rs78697948-G	0.072965	2E-35		0.055191234	[0.046-0.064] unit increase	Affymetrix [93095623] (imputed)	N
969	chr7	50436730	50436731	rs78697948	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	7p12.2	IKZF1	rs78697948-G	0.0727	3E-30		0.07901427	[0.065-0.093] unit increase	Affymetrix [~ 2500000] (imputed)	N
969	chr7	50436730	50436731	rs78697948	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	7p12.2	IKZF1	rs78697948-G	0.0727	4E-19		0.06202777	[0.048-0.076] unit increase	Affymetrix [~ 2500000] (imputed)	N
969	chr7	50436730	50436731	rs78697948	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	7p12.2	IKZF1	rs78697948-G	0.0728	1E-30		0.07982786	[0.066-0.093] unit decrease	Affymetrix [~ 2500000] (imputed)	N
969	chr7	50436827	50436828	rs12718730	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	7p12.2	IKZF1	rs12718730-A	0.372902	3E-9		0.013510769	[0.009-0.018] unit decrease	Affymetrix [93095623] (imputed)	N
969	chr7	50436947	50436948	rs12718731	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	7p12.2	IKZF1	rs12718731-G	0.398863	7E-32		0.02756993	[0.023-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
969	chr7	50436947	50436948	rs12718731	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	7p12.2	IKZF1	rs12718731-G	0.398917	2E-13		0.01729459	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
969	chr7	50436947	50436948	rs12718731	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	7p12.2	IKZF1	rs12718731-G	0.4008	6E-15		0.02846225	[0.021-0.036] unit decrease	Affymetrix [~ 2500000] (imputed)	N
969	chr7	50436947	50436948	rs12718731	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	7p12.2	IKZF1	rs12718731-G	0.4008	2E-15		0.02899767	[0.022-0.036] unit increase	Affymetrix [~ 2500000] (imputed)	N
969	chr7	50439414	50439415	rs78015841	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	7p12.2	IKZF1	rs78015841-A	0.072925	2E-45		0.06318443	[0.054-0.072] unit increase	Affymetrix [93095623] (imputed)	N
969	chr7	50443140	50443141	rs80271829	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	7p12.2	IKZF1	rs80271829-C	0.086044	2E-14		0.030301254	[0.023-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
969	chr7	50443140	50443141	rs80271829	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	7p12.2	IKZF1	rs80271829-C	0.0868	4E-15		0.04998056	[0.037-0.062] unit decrease	Affymetrix [~ 2500000] (imputed)	N
969	chr7	50444151	50444152	rs150640087	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	7p12.2	IKZF1	rs150640087-T	0.016317	2E-11		0.059603557	[0.042-0.077] unit increase	Affymetrix [93095623] (imputed)	N
969	chr7	50444151	50444152	rs150640087	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	7p12.2	IKZF1	rs150640087-T	0.01632	7E-19		0.07928898	[0.062-0.097] unit increase	Affymetrix [93095623] (imputed)	N
969	chr7	50444151	50444152	rs150640087	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	7p12.2	IKZF1	rs150640087-T	0.0163180000000001	7E-26		0.0939206	[0.076-0.111] unit increase	Affymetrix [93095623] (imputed)	N
969	chr7	50444151	50444152	rs150640087	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p12.2	NR	rs150640087-G	0.984314	4E-33				Affymetrix, Illumina [19872809] (imputed)	N
969	chr7	50444151	50444152	rs150640087	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	7p12.2	NR	rs150640087-G	0.983756	2E-35		0.099543	[0.084-0.115] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
969	chr7	50444151	50444152	rs150640087	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	7p12.2		rs150640087-?	NR	6E-25				NR [~ 8900000] (imputed)	N
969	chr7	50444151	50444152	rs150640087	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	7p12.2	IKZF1	rs150640087-T	0.0162	5E-10		0.09008486	[0.062-0.118] unit increase	Affymetrix [~ 2500000] (imputed)	N
969	chr7	50444151	50444152	rs150640087	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	7p12.2	IKZF1	rs150640087-T	0.0162	5E-9		0.08443494	[0.056-0.113] unit increase	Affymetrix [~ 2500000] (imputed)	N
969	chr7	50444151	50444152	rs150640087	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	7p12.2	IKZF1	rs150640087-T	0.0162	2E-10		0.09153911	[0.063-0.12] unit increase	Affymetrix [~ 2500000] (imputed)	N
969	chr7	50457620	50457621	rs78699863	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	7p12.2	IKZF1	rs78699863-C	0.159137	2E-15		0.02468701	[0.019-0.031] unit increase	Affymetrix [93095623] (imputed)	N
969	chr7	50460207	50460208	rs7797772	29594489	Apewokin S	2018-03-28	Support Care Cancer	Host genetic susceptibility to Clostridium difficile infections in patients undergoing autologous stem cell transplantation: a genome-wide association study.	Clostridium difficile infection in multiple myeloma	57 European ancestry cases, 589 European ancestry controls	NA	7p12.2	NR	rs7797772-?		6E-7				Illumina [892589]	N
970	chr7	50465829	50465830	rs62447205	25751624	Onengut-Gumuscu S	2015-04-01	Nat Genet	Fine mapping of type 1 diabetes susceptibility loci and evidence for colocalization of causal variants with lymphoid gene enhancers.	Type 1 diabetes	6,683 European ancestry cases, 12,173 European ancestry controls, 2,601 European ancestry affected sibling pair families, 69 European ancestry trios	NA	7p12.2	IKZF1	rs62447205-A	0.72	3E-8		1.1235955		Illumina [135870]	N
970	chr7	50466303	50466304	rs11978267	29348612	Wiemels JL	2018-01-18	Nat Commun	GWAS in childhood acute lymphoblastic leukemia reveals novel genetic associations at chromosomes 17q12 and 8q24.21.	Acute lymphoblastic leukemia (childhood)	1,949 Latino cases, 8,584 Latino controls, 1,184 European ancestry cases, 3551 European ancestry controls, 130 African American cases, 3,842 African American controls	959 European ancestry cases,  2,624 European ancestry controls, 530 Latino cases, 511 Latino controls	7p12.2	IKZF1	rs11978267-A	NR	2E-29		1.43	[NR]	Affymetrix [757935]	N
970	chr7	50466303	50466304	rs11978267	22076464	Ellinghaus E	2011-11-11	Leukemia	Identification of germline susceptibility loci in ETV6-RUNX1-rearranged childhood acute lymphoblastic leukemia.	Acute lymphoblastic leukemia (childhood)	419 European ancestry ETV6-RUNX1 positive cases, 474 European ancestry controls	951 European ancestry ETV6-RUNX1 positive cases, 326 European ancestry ETV6-RUNX1 negative cases, 3,061 European ancestry controls	7p12.2	IKZF1	rs11978267-G	0.27	9E-11	(ETV6-RUNX1 positive)	1.43	[1.28 - 1.59]	Affymetrix [355750]	N
970	chr7	50466303	50466304	rs11978267	19684603	Trevino LR	2009-08-16	Nat Genet	Germline genomic variants associated with childhood acute lymphoblastic leukemia.	Acute lymphoblastic leukemia (childhood)	317 European ancestry cases, 17,958 European ancestry controls	NA	7p12.2	DDC, IKZF1	rs11978267-G	0.27	8E-11		1.69	[1.40-1.90]	Affymetrix [307944]	N
970	chr7	50469980	50469981	rs11980379	29296818	Clay-Gilmour AI	2017-09-08	Blood Adv	Genetic association with B-cell acute lymphoblastic leukemia in allogeneic transplant patients differs by age and sex.	B cell acute lymphoblastic leukaemia (normal cytogenetics)	193 European ancestry cases, 3027 European ancestry controls	NA	7p12.2	IKZF1	rs11980379-C	0.3	5E-8				Illumina [~ 8500000] (imputed)	N
970	chr7	50469980	50469981	rs11980379	29296818	Clay-Gilmour AI	2017-09-08	Blood Adv	Genetic association with B-cell acute lymphoblastic leukemia in allogeneic transplant patients differs by age and sex.	B cell acute lymphoblastic leukaemia (hyperdiploid negative)	410 European ancestry cases, 3027 European ancestry controls	NA	7p12.2	IKZF1	rs11980379-C	0.3	3E-7				Illumina [~ 8500000] (imputed)	N
970	chr7	50469980	50469981	rs11980379	29296818	Clay-Gilmour AI	2017-09-08	Blood Adv	Genetic association with B-cell acute lymphoblastic leukemia in allogeneic transplant patients differs by age and sex.	B cell acute lymphoblastic leukaemia (Philadelphia chromosome negative)	333 European ancestry cases, 3,027 European ancestry controls	NA	7p12.2	IKZF1	rs11980379-C	0.3	4E-9				Illumina [~ 8500000] (imputed)	N
970	chr7	50469980	50469981	rs11980379	29296818	Clay-Gilmour AI	2017-09-08	Blood Adv	Genetic association with B-cell acute lymphoblastic leukemia in allogeneic transplant patients differs by age and sex.	Acute lymphoblastic leukemia in childhood (B cell precursor)	134 European ancestry cases, 3,027 European ancestry controls	NA	7p12.2	IKZF1	rs11980379-C	0.3	1E-9		2.3	[1.5-3.7]	Illumina [~ 8500000] (imputed)	N
970	chr7	50469980	50469981	rs11980379	29296818	Clay-Gilmour AI	2017-09-08	Blood Adv	Genetic association with B-cell acute lymphoblastic leukemia in allogeneic transplant patients differs by age and sex.	Acute lymphoblastic leukemia (B-cell precursor)	272 European ancestry male cases, 174 European ancestry female cases, 2,098 European ancestry male controls, 929 European ancestry female controls	NA	7p12.2	IKZF1	rs11980379-C	NR	4E-8	(males)	1.8	[1.2-2.5]	Illumina [~ 8500000] (imputed)	N
970	chr7	50469980	50469981	rs11980379	29296818	Clay-Gilmour AI	2017-09-08	Blood Adv	Genetic association with B-cell acute lymphoblastic leukemia in allogeneic transplant patients differs by age and sex.	Acute lymphoblastic leukemia (B-cell precursor)	272 European ancestry male cases, 174 European ancestry female cases, 2,098 European ancestry male controls, 929 European ancestry female controls	NA	7p12.2	IKZF1	rs11980379-C	0.3	7E-8		1.5	[1.2-2.0]	Illumina [~ 8500000] (imputed)	N
970	chr7	50469980	50469981	rs11980379	23996088	Migliorini G	2013-08-30	Blood	Variation at 10p12.2 and 10p14 influences risk of childhood B-cell acute lymphoblastic leukemia and phenotype.	Acute lymphoblastic leukemia (B-cell precursor)	1,658 European ancestry child cases, 4,723 European ancestry controls	1,449 European ancestry child cases, 1,488 European ancestry controls	7p12.2	IKZF1	rs11980379-?	NR	3E-33				Illumina [382776] (imputed)	N
970	chr7	50470603	50470604	rs4132601	29632299	Vijayakrishnan J	2018-04-09	Nat Commun	Genome-wide association study identifies susceptibility loci for B-cell childhood acute lymphoblastic leukemia.	Acute lymphoblastic leukemia in childhood (B cell precursor)	2,442 European ancestry cases, 14,609 European ancestry controls	NA	7p12.2	IKZF1	rs4132601-?	NR	6E-55		1.75	[1.63-1.88]	Illumina [6755715] (imputed)	N
970	chr7	50470603	50470604	rs4132601	22076464	Ellinghaus E	2011-11-11	Leukemia	Identification of germline susceptibility loci in ETV6-RUNX1-rearranged childhood acute lymphoblastic leukemia.	Acute lymphoblastic leukemia (childhood)	419 European ancestry ETV6-RUNX1 positive cases, 474 European ancestry controls	951 European ancestry ETV6-RUNX1 positive cases, 326 European ancestry ETV6-RUNX1 negative cases, 3,061 European ancestry controls	7p12.2	IKZF1	rs4132601-G	0.27	8E-13		1.43	[1.30 - 1.58]	Affymetrix [355750]	N
970	chr7	50470603	50470604	rs4132601	19684604	Papaemmanuil E	2009-08-16	Nat Genet	Loci on 7p12.2, 10q21.2 and 14q11.2 are associated with risk of childhood acute lymphoblastic leukemia.	Acute lymphoblastic leukemia (childhood)	907 European ancestry cases, 2,398 European ancestry controls	NA	7p12.2	IKZF1	rs4132601-C	0.28	1E-19		1.69	[1.58-1.81]	Illumina [291473]	N
970	chr7	50473250	50473251	rs6964969	23512250	Xu H	2013-03-19	J Natl Cancer Inst	Novel susceptibility variants at 10p12.31-12.2 for childhood acute lymphoblastic leukemia in ethnically diverse populations.	Acute lymphoblastic leukemia (childhood)	972 European ancestry cases, 1,386 European ancestry controls, 89 African American cases, 1,363 African American controls, 305 Hispanic cases, 1,008 Hispanic controls	574 European ancestry cases, 2,601 European ancestry controls, 128 African American cases, 1,075 African American controls, 143 Hispanic cases, 640 Hispanic controls	7p12.2	DDC, GRB10, IKZF1	rs6964969-C	0.28	2E-29		1.67	[1.53-1.83]	Affymetrix [709059]	N
970	chr7	50474972	50474973	rs80309567	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	7p12.2	IKZF1	rs80309567-T	0.073526	1E-20		0.04021469	[0.032-0.049] unit decrease	Affymetrix [93095623] (imputed)	N
970	chr7	50477513	50477514	rs17133805	31767839	Vijayakrishnan J	2019-11-25	Nat Commun	Identification of four novel associations for B-cell acute lymphoblastic leukaemia risk.	B-cell acute lymphoblastic leukaemia	5,321 European ancestry cases, 16,666 European ancestry controls	2,237 cases, 3,461 controls	7p12.2	IKZF1	rs17133805-G	0.32	5E-71		1.65	[1.56-1.74]	Affymetrix, Illumina [~ 6118121] (imputed)	N
970	chr7	50478626	50478627	rs1110701	25310577	Evans TJ	2014-10-13	PLoS One	Confirmation of childhood acute lymphoblastic leukemia variants, ARID5B and IKZF1, and interaction with parental environmental exposures.	Acute lymphoblastic leukemia (childhood)	358 European ancestry cases, 1,192 European ancestry controls	441 European ancestry cases, 1,542 European ancestry controls	7p12.2	IKZF1	rs1110701-G	0.28	7E-9		1.69	[1.42-2.02]	Illumina [7162141] (imputed)	N
970	chr7	50539035	50539036	rs149984502	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	7p12.2		rs149984502-T	NR	2E-10		0.0549	[0.038-0.072] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
970	chr7	50539035	50539036	rs149984502	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	7p12.2	NR	rs149984502-C	0.981391	1E-11		0.047879	[0.034-0.062] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
970	chr7	50565826	50565827	rs2167364	22076464	Ellinghaus E	2011-11-11	Leukemia	Identification of germline susceptibility loci in ETV6-RUNX1-rearranged childhood acute lymphoblastic leukemia.	Acute lymphoblastic leukemia (childhood)	419 European ancestry ETV6-RUNX1 positive cases, 474 European ancestry controls	951 European ancestry ETV6-RUNX1 positive cases, 326 European ancestry ETV6-RUNX1 negative cases, 3,061 European ancestry controls	7p12.2	DDC	rs2167364-G	0.31	2E-8		1.32	[1.20 - 1.45]	Affymetrix [355750]	N
970	chr7	50565826	50565827	rs2167364	22076464	Ellinghaus E	2011-11-11	Leukemia	Identification of germline susceptibility loci in ETV6-RUNX1-rearranged childhood acute lymphoblastic leukemia.	Acute lymphoblastic leukemia (childhood)	419 European ancestry ETV6-RUNX1 positive cases, 474 European ancestry controls	951 European ancestry ETV6-RUNX1 positive cases, 326 European ancestry ETV6-RUNX1 negative cases, 3,061 European ancestry controls	7p12.2	DDC	rs2167364-G	0.31	2E-7	(ETV6-RUNX1 positive)	1.32	[1.19 - 1.46]	Affymetrix [355750]	N
970	chr7	50565966	50565967	rs4947581	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	7p12.2	NR	rs4947581-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
970	chr7	50571995	50571996	rs3823674	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		7p12.1	DDC	rs3823674-C	0.572244	4E-8		0.00765672	[0.0049-0.0104] unit increase	Affymetrix [12370749]	N
970	chr7	50572708	50572709	rs4947584	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	7p12.1		rs4947584-?	NR	1E-9				NR [~ 8900000] (imputed)	N
970	chr7	50573139	50573140	rs6944090	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	7p12.1		rs6944090-C	NR	1E-9		0.0154	[0.011-0.02] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
970	chr7	50577967	50577968	rs73121277	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	7p12.1	NR	rs73121277-C	0.2966	7E-10		0.026	[0.018-0.034] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
970	chr7	50577967	50577968	rs73121277	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	7p12.1	NR	rs73121277-?	NR	8E-10				Affymetrix [~ 8270000] (imputed)	N
970	chr7	50581971	50581972	rs2876826	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	7p12.1	NR	rs2876826-G	0.2153	3E-8		0.0306	[0.02-0.041] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
971	chr7	50610378	50610379	rs7809234	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite ratios	Up to 5,591 European ancestry individuals	Up to 1,767 European ancestry individuals	7p12.1	DDC	rs7809234-A	0.88	6E-14	(indoleacetate/N2,N2-dimethylguanosine)	0.049	[0.035-0.063] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
971	chr7	50610612	50610613	rs3807553	29594489	Apewokin S	2018-03-28	Support Care Cancer	Host genetic susceptibility to Clostridium difficile infections in patients undergoing autologous stem cell transplantation: a genome-wide association study.	Clostridium difficile infection in multiple myeloma	57 European ancestry cases, 589 European ancestry controls	NA	7p12.1	NR	rs3807553-?		2E-6				Illumina [892589]	N
971	chr7	50614172	50614173	rs10499694	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	7p12.1	NA	rs10499694-A	0.4935	1E-15		0.013	[0.0099-0.0161] unit increase	NR [~ 27400000] (imputed)	N
971	chr7	50614172	50614173	rs10499694	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	7p12.1	NA	rs10499694-A	0.4935	1E-15		0.013	[0.0099-0.0161] unit increase	NR [~ 27400000] (imputed)	N
971	chr7	50614172	50614173	rs10499694	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	7p12.1	DDC	rs10499694-A	0.503	5E-7		0.015	[0.009-0.0204] kg/m2 increase	Affymetrix, Illumina [2550021]	N
971	chr7	50614172	50614173	rs10499694	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	7p12.1	DDC	rs10499694-A	0.497	1E-6	(EA)	0.015	[0.0088-0.021] kg/m2 increase	Affymetrix, Illumina [2550021]	N
971	chr7	50615615	50615616	rs11765748	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	7p12.1	NR	rs11765748-T	NR	3E-7		0.014	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
971	chr7	50615615	50615616	rs11765748	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	7p12.1	ZPBP, C7orf72, IKZF1, FIGNL1, LOC100129427, GRB10, COBL	rs11765748-A	0.508891558395439	3E-10		0.018610986	unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
971	chr7	50618875	50618876	rs4947644	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index x sex x age interaction (4df test)	up to 51,625 European ancestry men aged <50, up to 60,654 European ancestry women aged <50, up to 90,988 European ancestry men aged >50, up to 106,622 European ancestry women aged >50	NA	7p12.1	DDC, ZPBP, C7orf72, IKZF1, FIGNL1, LOC100129427, GRB10, COBL	rs4947644-T	0.51	2E-9				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
971	chr7	50618875	50618876	rs4947644	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index (age <50)	up to 51,625 European ancestry men, up to 60,654 European ancestry women	NA	7p12.1	DDC, ZPBP, C7orf72, IKZF1, FIGNL1, LOC100129427, GRB10, COBL	rs4947644-T	0.51	8E-10		0.03	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
971	chr7	50618875	50618876	rs4947644	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	7p12.1	DDC, ZPBP, C7orf72, IKZF1, FIGNL1, LOC100129427, GRB10, COBL	rs4947644-T	0.51	2E-8				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
971	chr7	50622711	50622712	rs1451375	19465909	Jallow M	2009-05-24	Nat Genet	Genome-wide and fine-resolution association analysis of malaria in West Africa.	Malaria	958 Gambian ancestry cases, 1,382 Gambian ancestry controls	1,087 Gambian ancestry cases, 2,376 Gambian ancestry controls	7p12.1	DDC	rs1451375-?	0.78	6E-6		1.33	[1.18-1.52]	Affymetrix [402814]	N
971	chr7	50625737	50625738	rs57835901	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	7p12.1	DDC	rs57835901-T	0.965555	2E-12	(3-methoxytyrosine)	0.446	[0.32-0.57] unit decrease	Illumina [13039987] (imputed)	N
971	chr7	50625737	50625738	rs57835901	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	1,509 European ancestry individuals	7p12.1	DDC	rs57835901-T	0.965555	2E-12	(3-methoxytyrosine)	0.446	[0.32-0.57] unit decrease	Illumina [13039987] (imputed)	N
971	chr7	50642316	50642317	rs141297868	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	334,468 European ancestry, NR ancestry individuals	NA	7p12.1		rs141297868-?	NR	5E-8				Affymetrix [NR] (imputed)	N
971	chr7	50642700	50642701	rs6967481	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	7p12.1	DDC, GRB10	rs6967481-T	0.5011	8E-21		1.0326		Affymetrix [11880941] (imputed)	N
971	chr7	50642700	50642701	rs6967481	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	7p12.1	DDC, GRB10	rs6967481-T	0.5011	8E-21		1.0326208		Affymetrix [11880941] (imputed)	N
971	chr7	50642700	50642701	rs6967481	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	7p12.1		rs6967481-?	NR	5E-11				NR [~ 8900000] (imputed)	N
971	chr7	50659192	50659193	rs11555134	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7p12.1		rs11555134-?	NR	2E-17				NR [~ 8900000] (imputed)	N
971	chr7	50661408	50661409	rs4245555	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	7p12.1		rs4245555-T	0.5872	2E-15		0.018	[0.014-0.022] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
971	chr7	50661670	50661674	rs145010378	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	7p12.1		rs145010378-C	NR	2E-11		0.0176	[0.013-0.023] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
971	chr7	50661971	50661972	rs9656664	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	7p12.1		rs9656664-?	NR	3E-11				NR [~ 8900000] (imputed)	N
971	chr7	50664921	50664922	rs12540874	21779181	Gorlova O	2011-07-14	PLoS Genet	Identification of novel genetic markers associated with clinical phenotypes of systemic sclerosis through a genome-wide association strategy.	Systemic sclerosis	2,296 European ancestry cases, 5,172 European ancestry controls	3,175 European ancestry cases, 4,210 European ancestry controls	7p12.1	GRB10	rs12540874-?	0.40	1E-6	(IcSSc)	1.15	[1.09-1.22]	Illumina [NR] (imputed)	N
971	chr7	50666032	50666033	rs7777754	26031901	Dahlin A	2015-06-02	Pharmacogenomics J	Genome-wide association study of leukotriene modifier response in asthma.	Response to zileuton treatment in asthma (FEV1 change interaction)	160 European and other ancestry zileuton-treated cases, 144 European and other ancestry placebo-controlled cases	149 European and other ancestry zileuton-treated cases, 73 European and other ancestry placebo-controlled cases	7p12.1	GRB10	rs7777754-?	NR	6E-6	(Recessive model)	0.76	unit decrease	Illumina [542562]	N
971	chr7	50686107	50686108	rs2190500	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	7p12.1		rs2190500-C	0.1025	2E-10		0.022	[0.014-0.03] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
971	chr7	50693857	50693858	rs10486757	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	7p12.1		rs10486757-?	NR	1E-9				NR [~ 8900000] (imputed)	N
971	chr7	50703719	50703719	rs201941874	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	7p12.1	GRB10	rs201941874-GAGTGC	0.118781	8E-12		0.0263845	[0.02-0.033] unit increase	Affymetrix [93095623] (imputed)	N
971	chr7	50723255	50723256	rs3807546	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Corpus callosum mid-anterior volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	7p12.1	GRB10	rs3807546-?		1E-6				Illumina [4322238] (imputed)	N
972	chr7	50726143	50726144	rs2237457	25223841	Li J	2014-09-13	Schizophr Res	A genetic locus in 7p12.2 associated with treatment resistant schizophrenia.	Schizophrenia (treatment resistant)	79 European ancestry treatment resistant cases, 95 European ancestry non-treatment resistant cases	70 European ancestry treatment resistant cases, 125 European ancestry non-treatment resistant cases	7p12.1	DDC, GRB10, LOC100128600	rs2237457-T	0.36	6E-7	(Recessive model)	1.74	[NR]	Illumina [552419]	N
972	chr7	50730451	50730452	rs2715094	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	7p12.1		rs2715094-A	NR	6E-16		0.0123	[0.0094-0.0152] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
972	chr7	50733033	50733034	rs2715093	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	7p12.1	NR	rs2715093-?	NR	3E-12				Affymetrix [~ 8270000] (imputed)	N
972	chr7	50733315	50733316	rs2237467	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	7p12.1	GRB10	rs2237467-A	0.220803	5E-9		0.018178	[0.012-0.024] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
972	chr7	50734417	50734418	rs17449280	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	7p12.1	GRB10	rs17449280-A	0.089022	9E-15		0.030198585	[0.023-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
972	chr7	50737830	50737831	rs2529414	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	7p12.1	GRB10	rs2529414-G	NR	9E-9		0.0194018	[0.013-0.026] unit increase	Affymetrix [321016] (imputed)	N
972	chr7	50737851	50737852	rs73116822	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	7p12.1	GRB10	rs73116822-C	0.9282	3E-9		5.948	NR z score increase	Illumina [26237160] (imputed)	N
972	chr7	50738481	50738482	rs2529411	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	7p12.1	NR	rs2529411-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
972	chr7	50738481	50738482	rs2529411	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	7p12.1		rs2529411-?	NR	2E-8				NR [~ 8900000] (imputed)	N
972	chr7	50738986	50738987	rs2244479	31636452	Satizabal CL	2019-10-21	Nat Genet	Genetic architecture of subcortical brain structures in 38,851 individuals.	Putamen volume	37,571 European ancestry individuals	341 South East and East Asian ancestry individuals, 769 African American individuals	7p12.1	NR	rs2244479-T	0.647	1E-9		6.073	NR z score decrease	Affymetrix, Illumina [NR] (imputed)	N
972	chr7	50739609	50739610	rs17152083	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	7p12.1	GRB10	rs17152083-C	0.1063	4E-11		0.0039	[0.0029-0.0049] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
972	chr7	50739737	50739738	rs73116829	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	7p12.1	GRB10	rs73116829-A	0.1137	1E-10		0.0043	[0.0031-0.0055] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
972	chr7	50743094	50743095	rs886821	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	7p12.1	NR	rs886821-?	NR	7E-10				Affymetrix [~ 8270000] (imputed)	N
972	chr7	50743239	50743240	rs2237474	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	7p12.1	GRB10	rs2237474-T	0.3586	1E-20		0.0183	[0.014-0.022] unit increase	Affymetrix [18391927] (imputed)	N
972	chr7	50743239	50743240	rs2237474	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	7p12.1	NR	rs2237474-?	NR	2E-8	(right putamen)			NR [9227495] (imputed)	N
972	chr7	50750127	50750128	rs2715135	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	7p12.1	NA	rs2715135-T	0.3706	4E-9		0.0109	[0.0074-0.0144] unit increase	NR [~ 27400000] (imputed)	N
972	chr7	50751089	50751090	rs10248619	22581228	Manning AK	2012-05-13	Nat Genet	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting blood glucose (BMI interaction)	Up to 58,074 European ancestry individuals	Up tp 38,422 European ancestry individuals	7p12.1	GRB10	rs10248619-T	0.2138	8E-8		4.835E-4	[-0.00109-0.00206] unit decrease	Affymetrix, Illumina [~ 2400000] (imputed)	N
972	chr7	50751089	50751090	rs10248619	22581228	Manning AK	2012-05-13	Nat Genet	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting blood glucose	Up to 58,074 European ancestry individuals	Up tp 38,422 European ancestry individuals	7p12.1	GRB10	rs10248619-T	0.2412	3E-9		0.0187	[0.011-0.026] unit increase	Affymetrix, Illumina [~ 2400000] (imputed)	N
972	chr7	50752105	50752106	rs2715136	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	7p12.1	NR	rs2715136-?	NR	9E-6		2200.7524	NR unit increase	Illumina [2379855]	N
972	chr7	50754678	50754679	rs2282930	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	7p12.1		rs2282930-A	0.2296	1E-8	(conditional-joint)	0.0095	[0.0062-0.0128] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
972	chr7	50754678	50754679	rs2282930	22504420	Estrada K	2012-04-15	Nat Genet	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Femoral neck bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	7p12.1	GRB10	rs2282930-A	0.24	3E-6		0.03	[NR] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
972	chr7	50756759	50756760	rs73118816	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	7p12.1		rs73118816-C	NR	1E-12		0.0218	[0.016-0.028] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
972	chr7	50758244	50758245	rs933360	24699409	Prokopenko I	2014-04-03	PLoS Genet	A central role for GRB10 in regulation of islet function in man.	Ratio of the area under the curve for insulin and the area under the curve for glucose	up to 4,231 European individuals, up to 413 Old Order Amish (founder/genetic isolate) individuals	20,513 European individuals	7p12.1	GRB10	rs933360-A	0.62	8E-7		0.043	[0.026-0.06] unit decrease	Affymetrix, Illumina [at least 1961018] (imputed)	N
972	chr7	50758244	50758245	rs933360	24699409	Prokopenko I	2014-04-03	PLoS Genet	A central role for GRB10 in regulation of islet function in man.	Insulin levels adjusted for BMI	up to 4,409 European individuals, up to 411 Old Order Amish (founder/genetic isolate) individuals	18,535 European individuals	7p12.1	GRB10	rs933360-A	0.62	1E-9		0.055	[0.037-0.073] unit decrease	Affymetrix, Illumina [at least 1961018] (imputed)	N
972	chr7	50758244	50758245	rs933360	24699409	Prokopenko I	2014-04-03	PLoS Genet	A central role for GRB10 in regulation of islet function in man.	Incremental insulin	up to 4,447 European individuals, up to 411 Old Order Amish (founder/genetic isolate) individuals	20,706 European individuals	7p12.1	GRB10	rs933360-A	0.62	5E-9		0.051	[0.034-0.068] unit decrease	NR [at least 1961018] (imputed)	N
972	chr7	50758244	50758245	rs933360	24699409	Prokopenko I	2014-04-03	PLoS Genet	A central role for GRB10 in regulation of islet function in man.	Corrected insulin response adjusted for insulin sensitivity index	up to 4,565 European individuals, up to 413 Old Order Amish (founder/genetic isolate) individuals	20,461 European individuals	7p12.1	GRB10	rs933360-A	0.62	1E-7		0.046	[0.029-0.063] unit decrease	Affymetrix, Illumina [at least 1961018] (imputed)	N
972	chr7	50758244	50758245	rs933360	24699409	Prokopenko I	2014-04-03	PLoS Genet	A central role for GRB10 in regulation of islet function in man.	Corrected insulin response	up to 4,961 European individuals, up to 411 Old Order Amish (founder/genetic isolate) individuals	20,722 European individuals	7p12.1	GRB10	rs933360-A	0.62	3E-9		0.051	[0.034-0.068] unit decrease	Affymetrix, Illumina [at least 1961018] (imputed)	N
972	chr7	50758244	50758245	rs933360	24699409	Prokopenko I	2014-04-03	PLoS Genet	A central role for GRB10 in regulation of islet function in man.	Area under the curve of insulin levels	up to 4,324 European individuals, up to 413 Old Order Amish (founder/genetic isolate) individuals	20,620 European individuals	7p12.1	GRB10	rs933360-A	0.62	7E-6		0.039	[0.022-0.056] unit decrease	Affymetrix, Illumina [at least 1961018] (imputed)	N
972	chr7	50763174	50763174	rs5884163	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	7p12.1	GRB10	rs5884163-A	NR	4E-8		0.0229673	[0.015-0.031] unit increase	Affymetrix [321114] (imputed)	N
972	chr7	50763458	50763459	rs17450294	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	7p12.1	GRB10	rs17450294-C	0.085742	1E-11		0.027066823	[0.019-0.035] unit increase	Affymetrix [93095623] (imputed)	N
972	chr7	50764403	50764404	rs2299156	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	7p12.1		rs2299156-T	0.189	3E-8		0.0099	[0.0064-0.0134] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
972	chr7	50764403	50764404	rs2299156	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	7p12.1	Intergenic	rs2299156-T	0.189	2E-8	(MTAG)	0.0094	[0.0061-0.0127] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
972	chr7	50764947	50764948	rs73118830	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	7p12.1		rs73118830-C	NR	4E-9		0.0196	[0.013-0.026] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
972	chr7	50776485	50776486	rs145761614	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	7p12.1		rs145761614-?	NR	1E-16				NR [~ 8900000] (imputed)	N
972	chr7	50781538	50781539	rs73122790	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	7p12.1		rs73122790-A	NR	9E-9		0.0235	[0.015-0.032] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
972	chr7	50785447	50785448	rs1978208	34387878	Kim KY	2021-08-13	Hepatology	Genome-wide association of individual vulnerability with alcoholic liver disease: A Korean Genome and Epidemiology Study.	Alcohol-associated liver disease in non drinkers	782 Korean ancestry cases, 18,058 Korean ancestry controls	NA	7p12.1		rs1978208-?	NR	7E-7		1.339	[1.193-1.502]	Affymetrix [7975321] (imputed)	N
972	chr7	50786049	50786050	rs10265504	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	7p12.1		rs10265504-G	NR	2E-14		0.0171	[0.013-0.021] unit decrease	Affymetrix, Illumina [20535873] (imputed)	N
972	chr7	50786662	50786663	rs2108349	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting insulin	151,013 European ancestry individuals	NA	7p12.1	GRB10	rs2108349-A	0.655	1E-8		0.0115	[0.0076-0.0154] unit decrease	Affymetrix, Illumina [32635793] (imputed)	N
972	chr7	50786662	50786663	rs2108349	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	200,622 European ancestry individuals	NA	7p12.1	GRB10	rs2108349-A	0.6644	1E-15		0.0158	[0.012-0.019] unit decrease	Affymetrix, Illumina [34064007] (imputed)	N
972	chr7	50786662	50786663	rs2108349	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	19,247 Hispanic individuals	NA	7p12.1	GRB10	rs2108349-A	0.5242	4E-7		0.0252	[0.015-0.036] unit decrease	Affymetrix, Illumina [28177426] (imputed)	N
972	chr7	50788944	50788945	rs11238297	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical thickness (MOSTest)	26,502 European ancestry individuals	NA	7p12.1	KIF26B	rs11238297-?		4E-8				NR [7428630] (imputed)	N
972	chr7	50791578	50791579	rs6943153	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting glucose	73,089 European ancestry women	NA	7p12.1	GRB10	rs6943153-C	0.653511	4E-7		0.014948	[0.0092-0.0207] unit decrease	Affymetrix, Illumina [8700000] (imputed)	N
972	chr7	50791578	50791579	rs6943153	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting glucose	67,506 European ancestry men	NA	7p12.1	GRB10	rs6943153-C	0.653511	2E-6		0.014914	[0.0088-0.0211] unit decrease	Affymetrix, Illumina [8700000] (imputed)	N
972	chr7	50791578	50791579	rs6943153	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting glucose	151,188 European ancestry individuals	NA	7p12.1	GRB10	rs6943153-C	0.653511	2E-13		0.015368	[0.011-0.019] unit decrease	Affymetrix, Illumina [8700000] (imputed)	N
972	chr7	50797684	50797685	rs10275663	25189868	Sung YJ	2014-09-03	Am J Hypertens	Gene-smoking interactions identify several novel blood pressure loci in the Framingham Heart Study.	Blood pressure (smoking interaction)	Up to 6,889 individuals	NA	7p12.1	GRB10	rs10275663-?	NR	8E-7	(DBP,CPD)			Affymetrix [2485435] (imputed)	N
972	chr7	50802433	50802434	rs6968827	32986727	Kalra G	2020-09-28	PLoS Genet	Biological insights from multi-omic analysis of 31 genomic risk loci for adult hearing difficulty.	Age-related hearing impairment (MTAG)	330,759 European ancestry individuals	NA	7p12.1		rs6968827-?	NR	7E-9		5.7801147	z score increase	Affymetrix [NR] (imputed)	N
972	chr7	50806946	50806947	rs1962390	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	7p12.1	NR	rs1962390-?	NR	2E-8	(left cerebellum white matter)			NR [9227495] (imputed)	N
972	chr7	50807424	50807425	rs17548938	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	7p12.1	GRB10	rs17548938-A	0.0861	2E-9		0.03823237	[0.026-0.051] unit decrease	Affymetrix [~ 2500000] (imputed)	N
972	chr7	50807424	50807425	rs17548938	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	7p12.1	GRB10	rs17548938-A	0.0861	2E-9		0.03815998	[0.026-0.051] unit decrease	Affymetrix [~ 2500000] (imputed)	N
972	chr7	50808032	50808033	rs12536500	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (min-P)	26,502 European ancestry individuals	NA	7p12.1	C1orf106, KIF21B, CACNA1S	rs12536500-?		4E-11				NR [7428630] (imputed)	N
972	chr7	50808032	50808033	rs12536500	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (min-P)	26,502 European ancestry individuals	NA	7p12.1	VRK2, FANCL	rs12536500-?		1E-10				NR [7428630] (imputed)	N
972	chr7	50809084	50809085	rs13236710	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	7p12.1		rs13236710-A	0.139865	2E-8		0.0163154	[0.011-0.022] unit decrease	Illumina [13479295] (imputed)	N
972	chr7	50839797	50839798	rs6976572	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7p12.1		rs6976572-?	NR	8E-10				NR [~ 8900000] (imputed)	N
972	chr7	50839836	50839837	rs6946194	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	7p12.1		rs6946194-A	0.24	5E-9		5.85	z score increase	Affymetrix [9061022] (imputed)	N
972	chr7	50844012	50844013	rs10239980	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	7p12.1	GRB10	rs10239980-?		1E-11				NR [7428630] (imputed)	N
972	chr7	50853150	50853151	rs11238325	34108613	Ivarsdottir EV	2021-06-09	Commun Biol	The genetic architecture of age-related hearing impairment revealed by genome-wide association analysis.	Age-related hearing impairment	121,934 European ancestry cases, 591,699 European ancestry controls	NA	7p12.1	GRB10	rs11238325-C	27.76	1E-11	(additive)	0.96	[NR]	Affymetrix, Illumina [46900000] (imputed)	N
973	chr7	50866920	50866921	rs12718928	32002517	Julienne H	2020-01-24	NAR Genom Bioinform	JASS: command line and web interface for the joint analysis of GWAS results.	Insulin-related traits (multivariate analysis)	62,205 individuals	NA	7p12.1	GRB10	rs12718928-?	NR	7E-9				NR [3144808] (imputed)	N
973	chr7	50887173	50887174	rs7781440	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	24,646 African American cases, 31,446 African American controls	NA	7p12.1	NR	rs7781440-C	0.284	5E-9		0.086	[0.057-0.115] unit decrease	Affymetrix, Illumina [945603] (imputed)	N
973	chr7	50889247	50889248	rs6969354	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	7p12.1	Intergenic	rs6969354-G	0.985	4E-6	(AA)	0.163	NR unit increase	Illumina [NR] (imputed)	N
973	chr7	50901490	50901491	rs1548607	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	7p12.1	GRB10	rs1548607-A	0.67182	2E-20		0.0180169	[0.014-0.022] unit increase	NR [13737936] (imputed)	N
973	chr7	50901490	50901491	rs1548607	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	7p12.1		rs1548607-?	NR	9E-22				NR [~ 8900000] (imputed)	N
973	chr7	50901490	50901491	rs1548607	30158200	Trajanoska K	2018-08-29	BMJ	Assessment of the genetic and clinical determinants of fracture risk: genome wide association and mendelian randomisation study.	Fractures	37,857 European or East Asian cases, 227,116 European or East Asian controls	147,200 European ancestry cases, 150,085 European ancestry controls	7p12.1	GRB10, COBL	rs1548607-G	0.32	5E-10		1.03	[1.02-1.05]	Affymetrix, Illumina [2539801] (imputed)	N
973	chr7	50901490	50901491	rs1548607	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	7p12.1		rs1548607-?	NR	5E-23		0.0208625	[0.017-0.025] unit increase	Affymetrix [20259828] (imputed)	N
973	chr7	50901490	50901491	rs1548607	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	7p12.1	GRB10	rs1548607-A	0.687	4E-8		0.0363	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
973	chr7	50901490	50901491	rs1548607	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	7p12.1	GRB10	rs1548607-A	0.6861	1E-8	(European)	0.0414	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
973	chr7	50902860	50902861	rs76061879	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Odoribacter laneus abundance in stool	5,959 Finnish ancestry individuals	NA	7p12.1		rs76061879-G	0.0142929	1E-8		0.264176	[0.17-0.36] unit increase	Illumina [7980478] (imputed)	N
973	chr7	50915775	50915776	rs17454517	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	NA	7p12.1	GRB10	rs17454517-A	0.4936	3E-12		0.1216	[0.087-0.156] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
973	chr7	50975438	50975439	rs35001871	33979322	Currant H	2021-05-12	PLoS Genet	Genetic variation affects morphological retinal phenotypes extracted from UK Biobank optical coherence tomography images.	Retinal nerve fibre layer thickness or ganglion cell inner plexiform layer thickness (MTAG)	31,434 European ancestry individuals	NA	7p12.1	NR	rs35001871-C	0.29	1E-9		0.32	[0.22-0.42] unit increase	Affymetrix [9231066] (imputed)	N
973	chr7	50975438	50975439	rs35001871	33979322	Currant H	2021-05-12	PLoS Genet	Genetic variation affects morphological retinal phenotypes extracted from UK Biobank optical coherence tomography images.	Retinal nerve fibre layer (RNFL) thickness	31,434 European ancestry individuals	NA	7p12.1	NR	rs35001871-C	0.29	3E-6		0.19	[0.11-0.27] unit increase	Affymetrix [9231066] (imputed)	N
973	chr7	50975438	50975439	rs35001871	33979322	Currant H	2021-05-12	PLoS Genet	Genetic variation affects morphological retinal phenotypes extracted from UK Biobank optical coherence tomography images.	Ganglion cell inner plexiform layer (GCIPL) thickness	31,434 European ancestry individuals	NA	7p12.1	NR	rs35001871-C	0.29	1E-9		0.32	[0.22-0.42] unit increase	Affymetrix [9231066] (imputed)	N
974	chr7	51011857	51011858	rs60617249	29071344	Zhou H	2017-10-25	JAMA Psychiatry	Genetic Risk Variants Associated With Comorbid Alcohol Dependence and Major Depression.	Major depression and alcohol dependence	3,041 African American individuals, 1,618 European ancestry individuals	1,612 African American individuals, 1,551 European ancestry individuals	7p12.1	intergenic	rs60617249-G	0.505	4E-6	(AA)	0.436	unit decrease	Illumina [at least 5086170] (imputed)	N
974	chr7	51015192	51015193	rs7780389	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Type 1 diabetes	6,670 European ancestry cases, 22,308 European ancestry controls	NA	7p12.1	AC004830.1	rs7780389-?	0.952	6E-9		1.4112335		Illumina [252970]	N
974	chr7	51015192	51015193	rs7780389	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Autoimmune traits (pleiotropy)	11,489 European ancestry cases with celiac disease, 15,523 European ancestry cases with rheumatoid arthritis, 3,477 European ancestry cases with systemic sclerosis, 6,670 European ancestry cases with type 1 diabetes, 22,308 European ancestry controls	NA	7p12.1	COBL	rs7780389-T	NA	2E-8				Illumina [252970]	N
974	chr7	51018065	51018066	rs2329567	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x long total sleep time interaction (2df test)	2,933 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, up to 7,870 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,975 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 32,171 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 616 East Asian ancestry long sleepers, up to 9,486 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 929 African American controls, 2,517 East Asian ancestry controls, up to 38,126 European ancestry controls, 10,063 Hispanic controls	7p12.1	AC020743.2	rs2329567-?	NR	1E-9		0.003759	[0.0018-0.0057] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
974	chr7	51023486	51023487	rs4263714	33830302	Inshaw JRJ	2021-04-08	Diabetologia	Analysis of overlapping genetic association in type 1 and type 2 diabetes.	Type 1 diabetes	7,467 European ancestry cases, 10,218 European ancestry controls	NA	7p12.1	COBL/LOC100129427/GRB10	rs4263714-A		4E-6		0.20912386	[0.12-0.3] unit increase	Affymetrix, Illumina [7769284] (imputed)	N
974	chr7	51027193	51027194	rs4948088	19430480	Barrett JC	2009-05-10	Nat Genet	Genome-wide association study and meta-analysis find that over 40 loci affect risk of type 1 diabetes.	Type 1 diabetes	7,514 European ancestry cases, 9,045 European ancestry controls	4,267 European ancestry cases, 4,670 European ancestry controls, 4,342 European ancestry trios from 2,319 families	7p12.1	COBL	rs4948088-?	0.95	4E-8		1.3	[1.11-1.49]	Affymetrix, Illumina [841622] (imputed)	N
974	chr7	51028986	51028987	rs10277986	25751624	Onengut-Gumuscu S	2015-04-01	Nat Genet	Fine mapping of type 1 diabetes susceptibility loci and evidence for colocalization of causal variants with lymphoid gene enhancers.	Type 1 diabetes	6,683 European ancestry cases, 12,173 European ancestry controls, 2,601 European ancestry affected sibling pair families, 69 European ancestry trios	NA	7p12.1	Intergenic	rs10277986-A	0.96	1E-7		1.3157895		Illumina [135870]	N
974	chr7	51056046	51056047	rs186739251	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	7p12.1	Intergenic	rs186739251-C	0.999	2E-8	(AA)	1.943	NR unit increase	Illumina [NR] (imputed)	N
974	chr7	51075902	51075903	rs117123031	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial squamous cell lung carcinoma	367 European ancestry cases, 31,563 European ancestry controls	NA	7p12.1	RP4-724E13.2	rs117123031-T	0.019	4E-6		4.38	[2.33-8.21]	Illumina [7959153] (imputed)	N
974	chr7	51094962	51094963	rs114659987	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	7p12.1	COBL	rs114659987-A	0.999	5E-8	(AA)	0.452	unit increase	Illumina [NR] (imputed)	N
974	chr7	51094962	51094963	rs114659987	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	7p12.1	COBL	rs114659987-A	0.999	3E-9	(AA)	2.463	NR unit increase	Illumina [NR] (imputed)	N
974	chr7	51100189	51100190	rs12719025	33979322	Currant H	2021-05-12	PLoS Genet	Genetic variation affects morphological retinal phenotypes extracted from UK Biobank optical coherence tomography images.	Retinal nerve fibre layer thickness or ganglion cell inner plexiform layer thickness (MTAG)	31,434 European ancestry individuals	NA	7p12.1	NR	rs12719025-G	0.46	3E-10		0.3	[0.2-0.4] unit increase	Affymetrix [9231066] (imputed)	N
974	chr7	51100189	51100190	rs12719025	33979322	Currant H	2021-05-12	PLoS Genet	Genetic variation affects morphological retinal phenotypes extracted from UK Biobank optical coherence tomography images.	Ganglion cell inner plexiform layer (GCIPL) thickness	31,434 European ancestry individuals	NA	7p12.1	NR	rs12719025-G	0.46	3E-10		0.3	[0.2-0.4] unit increase	Affymetrix [9231066] (imputed)	N
974	chr7	51100189	51100190	rs12719025	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	7p12.1	COBL	rs12719025-?		3E-11				Affymetrix, Illumina [NR] (imputed)	N
974	chr7	51100189	51100190	rs12719025	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	7p12.1	COBL	rs12719025-?	NR	1E-54		1.039	[0.9-1.18] unit decrease	Affymetrix [11100000] (imputed)	N
975	chr7	51200297	51200298	rs714499	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	7p12.1	GRB10	rs714499-?	NR	3E-6	(DAG 34:1)	0.16758367	[0.098-0.238] unit decrease	Affymetrix [at least 2500000] (imputed)	N
976	chr7	51284214	51284215	rs17811625	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Squamous cell lung carcinoma	7,426 European ancestry cases, 55,627 European ancestry controls	NA	7p12.1	COBL	rs17811625-C	0.959900401	7E-6		1.2811943	[1.15-1.43]	Illumina [10439017] (imputed)	N
977	chr7	51491592	51491593	rs56236040	30898391	Lawrenson K	2019-03-19	Gynecol Oncol	Genome-wide association studies identify susceptibility loci for epithelial ovarian cancer in east Asian women.	Epithelial ovarian cancer	3,238 East Asian ancestry cases, 4,083 East Asian ancestry controls	NA	7p12.1		rs56236040-?	NR	4E-6	(ser_lg_lmp)	6.6		Illumina [11595112] (imputed)	N
978	chr7	51537886	51537887	rs1949829	23740775	Xie G	2013-09-01	Arthritis Rheum	Association of granulomatosis with polyangiitis (Wegener's) with HLA-DPB1*04 and SEMA6A gene variants: evidence from genome-wide analysis.	Wegener's granulomatosis	459 European ancestry cases, 1,503 European ancestry controls	291 European ancestry cases, 317 European ancestry controls	7p12.1	COBL	rs1949829-T	0.055	4E-7		1.78	[1.42-2.24]	Illumina [287802]	N
978	chr7	51538996	51538997	rs4947599	26480920	Sung YJ	2015-10-20	Int J Obes (Lond)	Genome-wide association studies suggest sex-specific loci associated with abdominal and visceral fat.	Visceral adipose tissue/subcutaneous adipose tissue ratio	1,152 European ancestry males, 1,361 European ancestry females	NA	7p12.1	COBL	rs4947599-C	0.8	5E-7		0.04	[NR] unit decrease	Affymetrix, Illumina [2473256] (imputed)	N
978	chr7	51541137	51541138	rs11761214	33338681	Chu H	2020-12-15	Environ Int	A prospective study of the associations among fine particulate matter, genetic variants, and the risk of colorectal cancer.	Colorectal cancer x fine particulate matter exposure levels interaction	590 European ancestry cases, 55 Black cases, 9 Hispanic cases, 28 Asian ancestry cases, 5 cases, 12,715 European ancestry controls, 1,153 Black controls, 37 Hispanic controls, 94 Asian ancestry controls, 15 controls	NA	7p12.1	COBL	rs11761214-C	0.299	3E-9		0.89	[0.86-0.93]	Illumina [4085111] (imputed)	N
978	chr7	51542080	51542081	rs1316471	29535761	Haaland OA	2018-02-26	Front Genet	A Genome-Wide Search for Gene-Environment Effects in Isolated Cleft Lip with or without Cleft Palate Triads Points to an Interaction between Maternal Periconceptional Vitamin Use and Variants in ESRRG.	Cleft lip with or without cleft palate (maternal periconceptional vitamin use interaction)	up to 825 European ancestry case-parent trios, up to 1,024 Asian ancestry case-parent trios, up to 59 case-parent trios	NA	7p12.1	COBL	rs1316471-?		2E-6		2.36	[1.66-3.38]	Illumina [341191]	N
978	chr7	51578021	51578022	rs112404845	33074286	Kunkle BW	2020-10-19	JAMA Neurol	Novel Alzheimer Disease Risk Loci and Pathways in African American Individuals Using the African Genome Resources Panel: A Meta-analysis.	Alzheimer's disease	2,784 African American cases, 5,222 African American controls	NA	7p12.1	COBL	rs112404845-A	0.008	5E-6	(model 2)	1.05	[0.60-1.50] unit increase	Illumina [29610185] (imputed)	N
978	chr7	51578021	51578022	rs112404845	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		7p12.1	COBL	rs112404845-A	0.991	4E-8	(liability model)	0.47	[0.29-0.65] unit decrease	NR [19725427] (imputed)	N
978	chr7	51615151	51615152	rs35205176	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Ejection fraction in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	7p12.1	NR	rs35205176-?	NR	2E-6				Affymetrix [5486770] (imputed)	N
979	chr7	51698192	51698193	rs10279826	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in obese individuals	4,613 European ancestry male individuals, 4,690 European ancestry female individuals, 142 European ancestry individuals	NA	7p12.1	COBL, POM121L12	rs10279826-C	0.94	8E-6	(men)	0.284	[0.16-0.41] kg/m2 decrease	Affymetrix, Illumina [at least 188473] (imputed)	N
979	chr7	51704390	51704391	rs35493220	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	7p12.1	NR	rs35493220-?	NR	6E-7	(AA)	1.1798	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
980	chr7	51831740	51831741	rs17134499	33547071	Bonfante B	2021-02-05	Sci Adv	A GWAS in Latin Americans identifies novel face shape loci, implicating VPS13B and a Denisovan introgressed region in facial variation.	Facial morphology (eye position 1)	6,169 Latin American individuals	NA	7p12.1		rs17134499-?	NR	4E-8				Illumina [8703729] (imputed)	N
980	chr7	51865607	51865608	rs4947642	25189868	Sung YJ	2014-09-03	Am J Hypertens	Gene-smoking interactions identify several novel blood pressure loci in the Framingham Heart Study.	Blood pressure (smoking interaction)	Up to 6,889 individuals	NA	7p12.1	intergenic	rs4947642-?	NR	1E-6	(SBP,Smoking)			Affymetrix [2485435] (imputed)	N
981	chr7	52006414	52006415	rs406001	23726511	Xie P	2013-05-28	Biol Psychiatry	Genome-wide association study identifies new susceptibility loci for posttraumatic stress disorder.	Post-traumatic stress disorder (asjusted for relatedness)	up to 308 European ancestry cases, up to 1,538 European ancestry controls, up to 456 African American cases, up to 2,936 African American controls	NA	7p12.1	COBL	rs406001-?	NR	3E-8	(Trauma exposed controls; EA)			Illumina [up to 871502]	N
981	chr7	52006414	52006415	rs406001	23726511	Xie P	2013-05-28	Biol Psychiatry	Genome-wide association study identifies new susceptibility loci for posttraumatic stress disorder.	Post-traumatic stress disorder (asjusted for relatedness)	up to 308 European ancestry cases, up to 1,538 European ancestry controls, up to 456 African American cases, up to 2,936 African American controls	NA	7p12.1	COBL	rs406001-?	NR	2E-8	(Whole cohort; EA)			Illumina [up to 871502]	N
981	chr7	52016333	52016334	rs117613935	33106475	Li QS	2020-10-26	Transl Psychiatry	Genome-wide association studies of antidepressant class response and treatment-resistant depression.	Response to antidepressants (non-treatment-resistant vs treatment-resistant depression)	21,649 European ancestry individuals with non-treatment-resistant depression, 3,857 European ancestry individuals with treatment-resistant depression	NA	7p12.1	NR	rs117613935-G	NR	8E-6		1.3999	NR	Illumina [at least 560000] (imputed)	N
982	chr7	52092804	52092805	rs116895492	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Ischemic stroke (cardioembolic)	174 Indian ancestry cases, 2,154 Indian ancestry controls	NA	7p12.1		rs116895492-?	NR	8E-7		1.1633106	[1.09555363103365-1.23525813184816]	Illumina [up to 7827597] (imputed)	N
982	chr7	52125787	52125788	rs146026886	33106475	Li QS	2020-10-26	Transl Psychiatry	Genome-wide association studies of antidepressant class response and treatment-resistant depression.	Response to antidepressants (non-treatment-resistant vs treatment-resistant depression)	21,649 European ancestry individuals with non-treatment-resistant depression, 3,857 European ancestry individuals with treatment-resistant depression	NA	7p12.1	NR	rs146026886-G	NR	7E-6		0.7195	NR	Illumina [at least 560000] (imputed)	N
982	chr7	52133802	52133803	rs111588657	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	7p12.1	Intergenic	rs111588657-A	0.983	4E-6	(AA)	0.29	NR unit decrease	Illumina [NR] (imputed)	N
982	chr7	52139577	52139578	rs190817748	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	7p12.1	Intergenic	rs190817748-A	0.984	3E-6	(AA)	0.312	NR unit decrease	Illumina [NR] (imputed)	N
982	chr7	52165756	52165757	rs192739715	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	7p12.1	Intergenic	rs192739715-C	0.998	3E-6	(AA)	0.181	unit increase	Illumina [NR] (imputed)	N
983	chr7	52235135	52235136	rs13225844	33106475	Li QS	2020-10-26	Transl Psychiatry	Genome-wide association studies of antidepressant class response and treatment-resistant depression.	Response to antidepressants (non-treatment-resistant vs treatment-resistant depression)	21,649 European ancestry individuals with non-treatment-resistant depression, 3,857 European ancestry individuals with treatment-resistant depression	NA	7p12.1	NR	rs13225844-G	NR	4E-6		0.8685	NR	Illumina [at least 560000] (imputed)	N
983	chr7	52247696	52247697	rs116969505	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		AC079763.1	rs116969505-?	NR	2E-10	(male)	1.49859	[NR] unit decrease	Affymetrix [NR] (imputed)	N
983	chr7	52273736	52273737	rs117145170	32066700	Zhang R	2020-02-05	Transl Psychiatry	Genome-wide study of immune biomarkers in cerebrospinal fluid and serum from patients with bipolar disorder and controls.	Serum immune biomarker levels	184 Scandinavian ancestry bipolar disorder cases, 107 Scandinavian ancestry controls	NA	7p12.1	intergenic	rs117145170-A	0.019	2E-8	(TIMP-2)	60.35	NR unit increase	Affymetrix, Illumina [> 5000000] (imputed)	N
985	chr7	52472449	52472450	rs1012036	20709820	Kong X	2010-08-13	Am J Respir Crit Care Med	Genome-wide association study identifies BICD1 as a susceptibility gene for emphysema.	Emphysema-related traits	2,383 European ancestry cases	NA	7p12.1	AC006320.2	rs1012036-C	0.77	5E-6	(qualitative)	1.47	[NR]	Illumina [499578]	N
986	chr7	52584624	52584625	rs6593005	30804566	Lane JM	2019-02-25	Nat Genet	Biological and clinical insights from genetics of insomnia symptoms.	Insomnia symptoms (never/rarely vs. usually)	129,270 European ancestry cases, 108,357 European ancestry controls	17,140 European ancestry cases, 61,850 European ancestry controls	7p12.1	LOC100131871/LOC100133258	rs6593005-G	0.740998	5E-9		1.02	[1.01-1.04]	Affymetrix [14661600] (imputed)	N
986	chr7	52584624	52584625	rs6593005	30804566	Lane JM	2019-02-25	Nat Genet	Biological and clinical insights from genetics of insomnia symptoms.	Insomnia symptoms (never/rarely vs. sometimes/usually)	345,022 European ancestry cases, 108,357 European ancestry controls	17,140 European ancestry cases, 61,850 European ancestry controls	7p12.1	LOC100131871/LOC100133258	rs6593005-G	0.740998	1E-6		1.02	[1.01-1.04]	Affymetrix [14661600] (imputed)	N
987	chr7	52698748	52698748	rs150804725	32349335	Lundback V	2020-04-27	Cells	Genome-Wide Association Study of Diabetogenic Adipose Morphology in the GENetics of Adipocyte Lipolysis (GENiAL) Cohort.	Adipose morphology	894 individuals	NA	7p12.1	NR	rs150804725-?	0.0297	5E-6		112.0	[-159--64] unit decrease	NR [9714326] (imputed)	N
987	chr7	52769644	52769645	rs1729836	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric bone mineral content (femoral neck)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	7p12.1	NR	rs1729836-C	0.358	1E-6		0.161864	[0.097-0.227] unit decrease	Illumina [~ 6600000] (imputed)	N
987	chr7	52774868	52774869	rs10241579	29251981	Weafer J	2017-12-01	Exp Clin Psychopharmacol	Hierarchical investigation of genetic influences on response inhibition in healthy young adults.	Inhibitory control	934 European ancestry individuals	NA	7p12.1	intergenic	rs10241579-T	0.085	5E-6				Illumina [4873750] (imputed)	N
987	chr7	52780212	52780213	rs1649709	33119750	Vergara C	2020-10-29	J Infect Dis	A multi-ancestry sex stratified genome-wide association study of spontaneous clearance of hepatitis C virus.	Hepatitis C (spontaneous viral clearance)	239 African ancestry male cases, 1,184 African ancestry male controls, 206 African ancestry female cases, 572 African ancestry female controls, 489 European ancestry male cases, 703 European ancestry male controls, 212 European ancestry female cases, 332 European ancestry female controls, 91 Hispanic male cases, 197 Hispanic male controls, 82 Hispanic female cases, 116 Hispanic female controls	NA	7p12.1	NR	rs1649709-G	0.59	9E-7	(female)	1.62	[NR]	Illumina [5730693] (imputed)	N
988	chr7	52879052	52879053	rs73696792	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in hypertension	398 Korean ancestry cases, 15,909 Korean ancestry controls	NA	7p12.1		rs73696792-T	0.01064	9E-6		2.816	[1.781-4.452]	Affymetrix [7975321] (imputed)	N
989	chr7	52985406	52985407	rs3923547	28360221	Boger CA	2017-03-30	J Am Soc Nephrol	NFAT5 and SLC4A10 Loci Associate with Plasma Osmolality.	Blood osmolality (transformed sodium)	45,889 European ancestry individuals, up to 8,765 Asian Indian ancestry individuals, up to 7,215 African ancestry individuals	17,637 European ancestry individuals	7p12.1	NR	rs3923547-A	0.06	9E-6	(Asian)	0.2	[0.11-0.29] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
989	chr7	53031459	53031460	rs11761819	33407418	Jonsson A	2021-01-06	BMC Med Genomics	Genome-wide association study of circulating levels of glucagon during an oral glucose tolerance test.	Glucagon levels in response to oral glucose tolerance test (fasting)	553 European ancestry individuals, 1,346 individuals	NA	7p12.1	NR	rs11761819-A	0.2229	2E-6		0.1811	[0.11-0.26] unit decrease	Illumina [NR] (imputed)	N
989	chr7	53031459	53031460	rs11761819	33407418	Jonsson A	2021-01-06	BMC Med Genomics	Genome-wide association study of circulating levels of glucagon during an oral glucose tolerance test.	Glucagon levels in response to oral glucose tolerance test (decremental area under the curve for 0-120 minutes)	553 European ancestry individuals, 1,346 individuals	NA	7p12.1	NR	rs11761819-A	0.2231	6E-6		0.1759	[0.1-0.25] unit decrease	Illumina [NR] (imputed)	N
990	chr7	53099581	53099582	rs188210107	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	CTACK levels	3,631 Finnish ancestry individuals	NA	7p12.1	NR	rs188210107-C	NR	6E-6		0.1804	[0.1-0.26] SD units increase	NR [10700000] (imputed)	N
990	chr7	53127558	53127559	rs1174864	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	7p12.1		rs1174864-G	0.454	1E-9		0.007	[0.005-0.009] unit decrease	NR [NR] (imputed)	N
990	chr7	53127558	53127559	rs1174864	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Smoking status (ever vs never smokers)	336,066 British ancestry individuals	NA	7p12.1	NR	rs1174864-A	0.5517	4E-8		1.0281719	NR	NR [8968716] (imputed)	N
990	chr7	53127558	53127559	rs1174864	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	7p12.1	POM121L12	rs1174864-A	0.5491	1E-8		0.011566963	[0.0076-0.0155] unit increase	Affymetrix [11514654] (imputed)	N
990	chr7	53127558	53127559	rs1174864	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	7p12.1	NR	rs1174864-G	0.49190341581063	5E-6	(IGP23)	0.1417	[0.081-0.203] unit increase	Illumina [~ 2500000] (imputed)	N
991	chr7	53290869	53290870	rs6651135	27595289	Goyal RK	2016-09-05	Bone Marrow Transplant	Novel HLA-DP region susceptibility loci associated with severe acute GvHD.	Acute graft versus host disease in bone marrow transplantation (recipient effect)	291 European ancestry recipients with acute graft versus host disease, 288 European ancestry recipients without acute graft versus host disease	NA		HAUS6P1	rs6651135-?		2E-7				Affymetrix [905761]	N
992	chr7	53404242	53404243	rs190844313	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Measles	38,219 European ancestry cases, 47,279 European ancestry controls	NA	7p12.1	NR	rs190844313-?	NR	3E-7		1.672	[0.98-2.36] unit increase	Illumina [at least 560000] (imputed)	N
992	chr7	53441568	53441569	rs145460587	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	7p12.1	Intergenic	rs145460587-G	0.996	4E-6	(AA)	1.014	NR unit increase	Illumina [NR] (imputed)	N
992	chr7	53467604	53467605	rs7810981	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	7p12.1	VSTM2A	rs7810981-?	NR	7E-6	(TAG 58:8)	0.17533202	[0.099-0.252] unit decrease	Affymetrix [at least 2500000] (imputed)	N
992	chr7	53473994	53473995	rs145540125	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7p12.1	NR	rs145540125-T	0.01916	7E-10	(SEPT11)	0.02745	NR unit decrease	Illumina [1671387] (imputed)	N
993	chr7	53503496	53503497	rs17772371	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7p12.1	NR	rs17772371-G	0.02787	1E-8	(SEPT11)	0.0208	NR unit decrease	Illumina [1671387] (imputed)	N
993	chr7	53512038	53512039	rs191080780	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Measles	38,219 European ancestry cases, 47,279 European ancestry controls	NA	7p12.1	NR	rs191080780-?	NR	2E-6		1.4253	[0.81-2.05] unit increase	Illumina [at least 560000] (imputed)	N
993	chr7	53544854	53544855	rs17693272	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7p12.1	NR	rs17693272-A	0.02787	1E-8	(SEPT11)	0.0208	NR unit decrease	Illumina [1671387] (imputed)	N
994	chr7	53627605	53627606	rs6964854	30120336	Kikuchi M	2018-08-17	Sci Rep	Genome-wide Association Analysis of Eye Movement Dysfunction in Schizophrenia.	Eye movement in schizophrenia (horizontal position gain)	60 Japanese ancestry cases	NA	7p12.1	POM121L12	rs6964854-?	NR	4E-8		0.182	unit decrease	Affymetrix [554152]	N
994	chr7	53634201	53634202	rs78105603	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Systolic blood pressure (long-term average)	5,304 African American individuals, 13,137 European ancestry individuals, 1,317 Hispanic individuals, 1,439 admixed individuals, 703 Chinese ancestry individuals	6,500 African American individuals, 2,451 European ancestry individuals, 2,869 Hispanic individuals	7p12.1	NR	rs78105603-C	0.1382	1E-6		0.9265	[0.56-1.3] mmHg increase	Affymetrix, Illumina [NR] (imputed)	N
994	chr7	53639104	53639105	rs1030306	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota alpha diversity (Simpson index)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	7p12.1		rs1030306-T	NR	1E-6		4.8849883	z score increase	Affymetrix, Illumina [NR] (imputed)	N
994	chr7	53639104	53639105	rs1030306	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota alpha diversity (Shannon index)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	7p12.1		rs1030306-T	NR	5E-6		4.5746703	z score increase	Affymetrix, Illumina [NR] (imputed)	N
994	chr7	53639104	53639105	rs1030306	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota alpha diversity (Inverse Simpson index)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	7p12.1		rs1030306-T	NR	7E-6		4.4891896	z score increase	Affymetrix, Illumina [NR] (imputed)	N
994	chr7	53640497	53640498	rs6593086	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	7p12.1	VSTM2A	rs6593086-?	NR	9E-6	(TAG 56:5)	0.15381658	[0.086-0.222] unit decrease	Affymetrix [at least 2500000] (imputed)	N
994	chr7	53640497	53640498	rs6593086	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	7p12.1	VSTM2A	rs6593086-?	NR	8E-6	(TAG 54:7)	0.15538359	[0.087-0.223] unit decrease	Affymetrix [at least 2500000] (imputed)	N
994	chr7	53640497	53640498	rs6593086	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	7p12.1	VSTM2A	rs6593086-?	NR	6E-9	(TAG 56:7)	0.20150992	[0.13-0.27] unit decrease	Affymetrix [at least 2500000] (imputed)	N
994	chr7	53640497	53640498	rs6593086	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	7p12.1	VSTM2A	rs6593086-?	NR	4E-9	(TAG 58:9)	0.20402229	[0.14-0.27] unit decrease	Affymetrix [at least 2500000] (imputed)	N
994	chr7	53640497	53640498	rs6593086	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	7p12.1	VSTM2A	rs6593086-?	NR	2E-8	(TAG 58:8)	0.1964469	[0.13-0.27] unit decrease	Affymetrix [at least 2500000] (imputed)	N
994	chr7	53640497	53640498	rs6593086	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	7p12.1	VSTM2A	rs6593086-?	NR	2E-6	(TAG 58:7)	0.1779758	[0.11-0.25] unit decrease	Affymetrix [at least 2500000] (imputed)	N
994	chr7	53640497	53640498	rs6593086	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	7p12.1	VSTM2A	rs6593086-?	NR	1E-7	(TAG 56:8)	0.18476167	[0.12-0.25] unit decrease	Affymetrix [at least 2500000] (imputed)	N
994	chr7	53640497	53640498	rs6593086	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	7p12.1	VSTM2A	rs6593086-?	NR	1E-7	(TAG 56:6)	0.18405192	[0.12-0.25] unit decrease	Affymetrix [at least 2500000] (imputed)	N
994	chr7	53655072	53655073	rs57169846	30954325	Kamboh MI	2019-03-11	Neurobiol Aging	Population-based genome-wide association study of cognitive decline in older adults free of dementia: identification of a novel locus for the attention domain.	Age-related cognitive decline (visuospatial skill) (slope of z-scores)	1,145 European ancestry individuals	NA	7p12.1	POM121L12, LINC01446	rs57169846-A	0.27	3E-6		0.22	unit increase	Illumina [5600000] (imputed)	N
994	chr7	53655958	53655959	rs192648543	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Measles	38,219 European ancestry cases, 47,279 European ancestry controls	NA	7p12.1	NR	rs192648543-?	NR	7E-6		1.3654	[0.74-1.99] unit increase	Illumina [at least 560000] (imputed)	N
994	chr7	53676836	53676837	rs17624383	29381699	Ravenhall M	2018-01-30	PLoS Genet	Novel genetic polymorphisms associated with severe malaria and under selective pressure in North-eastern Tanzania.	Severe malaria (adjusted for sickle cell variant rs334)	449 Tanzanian ancestry cases, 465 Tanzanian ancestry controls	NA	7p12.1	Intergenic	rs17624383-?	NR	3E-6	(Additive)		[NR]	Illumina [15200000] (imputed)	N
994	chr7	53676836	53676837	rs17624383	29381699	Ravenhall M	2018-01-30	PLoS Genet	Novel genetic polymorphisms associated with severe malaria and under selective pressure in North-eastern Tanzania.	Severe malaria	449 Tanzanian ancestry cases, 465 Tanzanian ancestry controls	NA	7p12.1	Intergenic	rs17624383-?	NR	6E-7	(Additive)	0.4	[NR]	Illumina [15200000] (imputed)	N
994	chr7	53695511	53695512	rs73122740	31164008	Mullins N	2019-06-05	Am J Psychiatry	GWAS of Suicide Attempt in Psychiatric Disorders and Association With Major Depression Polygenic Risk Scores.	Suicide attempts in bipolar disorder or schizophrenia	3,264 European ancestry attempters with bipolar disorder, 5,500 European ancestry nonattempters with bipolar disorder, 1,683 European ancestry attempters with schizophrenia, 2,946 European ancestry nonattempters with schizophrenia	NA	7p12.1	NR	rs73122740-T	0.91	4E-6		1.26	1.14-1.39	NR [at least 8807005] (imputed)	N
994	chr7	53708910	53708911	rs73696782	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Scarlet fever	6,812 European ancestry cases, 113,837 European ancestry controls	NA	7p12.1	NR	rs73696782-?	NR	8E-6		1.3727	[0.84-1.9] unit decrease	Illumina [at least 560000] (imputed)	N
994	chr7	53722648	53722649	rs17135934	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Optic cup area	24,493 European ancestry individuals	NA	7p12.1	EXOC2	rs17135934-A	0.189	6E-8		0.015	[0.0091-0.0209] mm2 increase	Affymetrix, Illumina [11830838] (imputed)	N
995	chr7	53785700	53785701	rs13235506	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Positive affect	180,281 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	7p12.1	NR	rs13235506-T	0.9442	4E-7		0.0385	[0.024-0.053] unit decrease	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
995	chr7	53857820	53857821	rs58950082	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	7p12.1		rs58950082-T	0.7867	5E-8		0.0095	[0.0062-0.0128] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
996	chr7	53900122	53900123	rs138896312	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	7p12.1	Intergenic	rs138896312-C	0.99	1E-6	(AA)	0.683	NR unit increase	Illumina [NR] (imputed)	N
996	chr7	53982625	53982626	rs17736906	24556642	Zeng Z	2014-02-18	Caries Res	Genome-wide association study of primary dentition pit-and-fissure and smooth surface caries.	Pit-and-Fissure caries	979 European ancestry individuals	NA	7p11.2	FLJ45974	rs17736906-A	0.1558	2E-6		0.7446	[NR] unit decrease	Illumina [1216074] (imputed)	N
997	chr7	54062890	54062891	rs4947856	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Perceived intensity of glucose	1,757 European ancestry twins	NA	7p11.2	RP11-806J6.1	rs4947856-G	0.08	7E-6		0.29	[0.17-0.41] unit increase	Illumina [4381914] (imputed)	N
998	chr7	54153538	54153539	rs71546150	32472697	Verma SS	2020-05-30	Clin Pharmacol Ther	Genome-wide association study of platelet reactivity and cardiovascular response in patients treated with clopidogrel: a study by the International Clopidogrel Pharmacogenomics Consortium (ICPC).	Stent thrombosis in response to clopidogrel treatment	37 European ancestry cases, 2,542 European ancestry controls	NA	7p11.2	HPVC1	rs71546150-T	0.973446	7E-6		6.5332203	NR	Illumina [5009928] (imputed)	N
998	chr7	54177111	54177112	rs1965517	31324189	Kim W	2019-07-19	Respir Res	DSP variants may be associated with longitudinal change in quantitative emphysema.	Emphysema annual change measurement in smokers (percent low attenuation area)	4,427 European ancestry individuals, 1,158 African American individuals	NA	7p11.2	VSTM2A	rs1965517-A	0.929	2E-7	(EA)	0.21	[0.13-0.29] unit increase	Illumina [NR] (imputed)	N
998	chr7	54181931	54181932	rs6593122	21396408	Miller EK	2011-03-25	Vaccine	Atopy history and the genomics of wheezing after influenza vaccination in children 6-59 months of age.	Vaccine-related adverse events	6 European ancestry cases,55 European ancestry controls	NA	7p11.2	intergenic	rs6593122-?	0.11	4E-6	(influenza)			Illumina [468458]	N
998	chr7	54182780	54182781	rs10232172	26962152	Offenbacher S	2016-03-08	Hum Mol Genet	Genome-wide association study of biologically informed periodontal complex traits offers novel insights into the genetic basis of periodontal disease.	Periodontal disease related phenotype (PCT4)	394 European American individuals with periodontal health, 389 European American individuals with mild-moderate periodontitis, 192 European American individuals with severe periodontitis	NA	7p11.2	HPVC1	rs10232172-?	NR	2E-8		0.45	[0.29-0.61] unit decrease	Affymetrix [2135235] (imputed)	N
999	chr7	54338656	54338657	rs142986748	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	7p11.2	intergenic	rs142986748-G	0.0110100729147099	2E-6	(G_Odoribacter_HB)	1.54499	[0.91-2.18] unit decrease	Illumina [7711310] (imputed)	N
1000	chr7	54417514	54417515	rs11765062	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		7p11.2	VSTM2A	rs11765062-T	0.45926	5E-8		0.00751629	[0.0048-0.0102] unit increase	Affymetrix [12370749]	N
1000	chr7	54430724	54430725	rs1525164	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	7p11.2	NR	rs1525164-C	0.539	1E-10		0.00698214	[0.0049-0.0091] unit decrease	NR [9732723] (imputed)	N
1000	chr7	54447961	54447962	rs7457728	30412241	Takeuchi F	2018-11-09	Hum Mol Genet	Genome-wide association study of cervical cancer suggests a role for ARRDC3 gene in human papillomavirus infection.	Cervical cancer	2,609 East Asian ancestry cases, 4,712 East Asian ancestry controls	1,461 Han Chinese ancestry cases, 3,295 Han Chinese ancestry controls	7p11.2	HPVC1, LINC01445, VSTM2A-OT1, VSTM2A	rs7457728-C	0.39	1E-8		1.19	[NR]	Affymetrix, Illumina [4602429] (imputed)	N
1000	chr7	54481627	54481628	rs2222595	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	7p11.2	SEC61G	rs2222595-?	NR	3E-6	(TAG 58:7)	0.16995683	[0.099-0.241] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1000	chr7	54485643	54485644	rs62449380	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	7p11.2		rs62449380-G	0.493	4E-10		0.007	[0.005-0.009] unit increase	NR [NR] (imputed)	N
1000	chr7	54516127	54516128	rs117898805	27195708	Scott WR	2016-05-19	PLoS One	Investigation of Genetic Variation Underlying Central Obesity amongst South Asians.	Waist-to-hip ratio adjusted for body mass index	10,318 South Asian ancestry individuals	1,922 South Asian ancestry individuals	7p11.2	VSTM2A	rs117898805-T	0.91	6E-6		0.11	[0.071-0.149] unit decrease	Affymetrix, Illumina, Perlegen [6571328] (imputed)	N
1001	chr7	54540389	54540390	rs538937281	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p11.2	NR	rs538937281-A	0.999556	5E-11				Affymetrix, Illumina [24332387] (imputed)	N
1001	chr7	54563811	54563812	rs147906088	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Logical memory (immediate recall) in Alzheimer's disease dementia	190 European ancestry Alzheimer's disease dementia cases	NA	7p11.2	SLC25A5P3, VSTM2A	rs147906088-T	0.02	8E-8		1.76	[1.15-2.37] unit decrease	Illumina [8411492] (imputed)	N
1001	chr7	54603543	54603550	rs1441302975	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7p11.2	NR	rs1441302975-T	0.01394	9E-9	(HBD)	4.678	NR unit increase	Illumina [1671387] (imputed)	N
1001	chr7	54614144	54614145	rs1235058	31533690	Orlova E	2019-09-18	BMC Oral Health	Pilot GWAS of caries in African-Americans shows genetic heterogeneity.	Dental caries (decayed and filled deciduous teeth)	96 African American children	NA	7p11.2	HPVC1, VSTM2A, EGFR	rs1235058-?		3E-6		2.256	[1.42-3.09] unit increase	Illumina [~ 4900000] (imputed)	N
1002	chr7	54674872	54674873	rs679830	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	7p11.2	RPL31P35	rs679830-A	0.116	6E-6	(IGFBP-3 )	0.03	[NR] ng/mL increase	Illumina [899892]	N
1002	chr7	54708438	54708439	rs62449458	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	7p11.2	Intergenic	rs62449458-A	0.6965	2E-10	(MTAG)	0.0093	[0.0064-0.0122] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1002	chr7	54710047	54710048	rs1545562	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	7p11.2	Intergenic	rs1545562-T	0.7031	1E-11	(MTAG)	0.0133	[0.0094-0.0172] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1002	chr7	54710047	54710048	rs1545562	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	7p11.2	Intergenic	rs1545562-T	0.7031	2E-9		0.0128	[0.0087-0.0169] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1002	chr7	54711984	54711985	rs11772108	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	7p11.2	Intergenic	rs11772108-A	0.7257	4E-13	(MTAG)	0.0134	[0.0097-0.0171] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1002	chr7	54715165	54715166	rs143820593	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	7p11.2	RPL31P35	rs143820593-A	0.0017	2E-6		0.5054	[0.3-0.71] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1002	chr7	54724042	54724043	rs1569266	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	7p11.2		rs1569266-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1002	chr7	54726264	54726265	rs62452901	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	7p11.2		rs62452901-A	0.371	3E-8	(conditional-joint)	0.008	[0.0051-0.0109] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1002	chr7	54732204	54732205	rs76436554	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	7p11.2	Intergenic	rs76436554-C	0.2969	1E-8	(MTAG)	0.0143	[0.0094-0.0192] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1002	chr7	54734672	54734673	rs1220779	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	7p11.2		rs1220779-A	0.4679	2E-8		0.0079	[0.0052-0.0106] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1002	chr7	54739371	54739372	rs610861	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	7p11.2	NR	rs610861-?	NR	1E-7				Affymetrix [NR]	N
1002	chr7	54754474	54754475	rs12718890	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	7p11.2	VSTM2A	rs12718890-?	NR	7E-6	(DAG 34:2)	0.15579867	[0.088-0.224] unit increase	Affymetrix [at least 2500000] (imputed)	N
1002	chr7	54783372	54783373	rs6946131	24871463	Armstrong DL	2014-05-29	Genes Immun	GWAS identifies novel SLE susceptibility genes and explains the association of the HLA region.	Systemic lupus erythematosus	725 European ancestry cases, 2,438 European ancestry controls	NA	7p11.2	SEC61G	rs6946131-T	0.53	2E-6		1.387	[1.3-1.47]	Illumina [NR]	N
1002	chr7	54785484	54785485	rs17563918	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	7p11.2	VSTM2A	rs17563918-?	NR	4E-6	(CE 20:4)	0.28892788	[0.17-0.41] unit increase	Affymetrix [at least 2500000] (imputed)	N
1002	chr7	54787260	54787261	rs11768490	30456828	Khramtsova EA	2018-11-20	Am J Med Genet B Neuropsychiatr Genet	Sex differences in the genetic architecture of obsessive-compulsive disorder.	Obsessive-compulsive disorder	1,249 European ancestry male cases, 2,789 European ancestry male controls, 1,525 European ancestry female cases, 4,307 European ancestry female controls	NA	7p11.2	intergenic	rs11768490-?		4E-6	(male)	0.239	[0.14-0.34] unit decrease	NR [~ 5500000] (imputed)	N
1003	chr7	54796451	54796452	rs579090	25378659	Lemaitre RN	2014-11-06	J Lipid Res	Genetic loci associated with circulating levels of very long-chain saturated fatty acids.	Very long-chain saturated fatty acid levels (fatty acid 20:0)	10,129 European ancestry individuals	NA	7p11.2	SEC61G	rs579090-A	NR	8E-6		4.46	[NR] Z score increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1003	chr7	54806275	54806276	rs7806881	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	7p11.2	VSTM2A	rs7806881-?	NR	2E-6	(leucine)	0.1864289	[0.11-0.26] unit increase	Affymetrix [at least 2500000] (imputed)	N
1003	chr7	54841468	54841469	rs189733495	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Romboutsia ilealis abundance in stool	5,959 Finnish ancestry individuals	NA	7p11.2		rs189733495-C	0.0157196	7E-9		0.229018	[0.15-0.31] unit decrease	Illumina [7980478] (imputed)	N
1003	chr7	54853765	54853766	rs2709313	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	7p11.2	VSTM2A	rs2709313-?	NR	6E-6	(CE 18:3)	0.24294448	[0.14-0.35] unit increase	Affymetrix [at least 2500000] (imputed)	N
1003	chr7	54880968	54880969	rs2699212	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	7p11.2	EGFR	rs2699212-?	NR	4E-6	(CE 20:5)	0.24907608	[0.14-0.36] unit increase	Affymetrix [at least 2500000] (imputed)	N
1003	chr7	54895947	54895948	rs11981543	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	7p11.2	EGFR	rs11981543-?	NR	4E-9	(CE 20:4)	0.31679904	[0.21-0.42] unit increase	Affymetrix [at least 2500000] (imputed)	N
1003	chr7	54895947	54895948	rs11981543	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	7p11.2	EGFR	rs11981543-?	NR	1E-6	(CE 22:6)	0.26507506	[0.16-0.37] unit increase	Affymetrix [at least 2500000] (imputed)	N
1003	chr7	54916279	54916280	rs75061358	30152087	Ostrom QT	2018-08-27	Int J Cancer	Age-specific genome-wide association study in glioblastoma identifies increased proportion of 'lower grade glioma'-like features associated with younger age.	Glioblastoma (age-stratified)	1,533 cases diagnosed below median age, 1,476 cases diagnosed at median age, 1,503 cases diagnosed above median age, 10,582 controls,	NA	7p11.2	EGFR	rs75061358-G	NR	7E-12	(Below median age-at-diagnosis)	1.67	[1.44-1.94]	NR [NR] (imputed)	N
1003	chr7	54916279	54916280	rs75061358	30152087	Ostrom QT	2018-08-27	Int J Cancer	Age-specific genome-wide association study in glioblastoma identifies increased proportion of 'lower grade glioma'-like features associated with younger age.	Glioblastoma (age-stratified)	1,533 cases diagnosed below median age, 1,476 cases diagnosed at median age, 1,503 cases diagnosed above median age, 10,582 controls,	NA	7p11.2	EGFR	rs75061358-G	NR	4E-16	(Above median age-at-diagnosis)	1.85	[1.60-2.15]	NR [NR] (imputed)	N
1003	chr7	54916279	54916280	rs75061358	30152087	Ostrom QT	2018-08-27	Int J Cancer	Age-specific genome-wide association study in glioblastoma identifies increased proportion of 'lower grade glioma'-like features associated with younger age.	Glioblastoma (age-stratified)	1,533 cases diagnosed below median age, 1,476 cases diagnosed at median age, 1,503 cases diagnosed above median age, 10,582 controls,	NA	7p11.2	EGFR	rs75061358-G	NR	2E-12	(Median age-at-diagnosis)	1.7	[1.47-1.97]	NR [NR] (imputed)	N
1003	chr7	54916279	54916280	rs75061358	29743610	Ostrom QT	2018-05-09	Sci Rep	Sex-specific glioma genome-wide association study identifies new risk locus at 3p21.31 in females, and finds sex-differences in risk at 8q24.21.	Glioma	4,831 European ancestry male cases, 3,206 European ancestry female cases, 5,216 European ancestry male controls, 5,470 European ancestry female controls	NA	7p11.2	EGFR	rs75061358-G	NR	7E-12	(males)	1.43	[1.29-1.59]	Affymetrix, Illumina [NR] (imputed)	N
1003	chr7	54916279	54916280	rs75061358	29743610	Ostrom QT	2018-05-09	Sci Rep	Sex-specific glioma genome-wide association study identifies new risk locus at 3p21.31 in females, and finds sex-differences in risk at 8q24.21.	Glioma	4,831 European ancestry male cases, 3,206 European ancestry female cases, 5,216 European ancestry male controls, 5,470 European ancestry female controls	NA	7p11.2	EGFR	rs75061358-G	NR	2E-9	(females)	1.46	[1.29-1.66]	Affymetrix, Illumina [NR] (imputed)	N
1003	chr7	54916279	54916280	rs75061358	29743610	Ostrom QT	2018-05-09	Sci Rep	Sex-specific glioma genome-wide association study identifies new risk locus at 3p21.31 in females, and finds sex-differences in risk at 8q24.21.	Glioblastoma	2,835 European ancestry male cases, 1,682 European ancestry female cases, 5,216 European ancestry male controls, 5,470 European ancestry female controls	NA	7p11.2	EGFR	rs75061358-G	NR	3E-16	(males)	1.65	[1.46-1.86]	Affymetrix, Illumina [NR] (imputed)	N
1003	chr7	54916279	54916280	rs75061358	29743610	Ostrom QT	2018-05-09	Sci Rep	Sex-specific glioma genome-wide association study identifies new risk locus at 3p21.31 in females, and finds sex-differences in risk at 8q24.21.	Glioblastoma	2,835 European ancestry male cases, 1,682 European ancestry female cases, 5,216 European ancestry male controls, 5,470 European ancestry female controls	NA	7p11.2	EGFR	rs75061358-G	NR	1E-11	(females)	1.68	[1.45-1.96]	Affymetrix, Illumina [NR] (imputed)	N
1003	chr7	54916279	54916280	rs75061358	28346443	Melin BS	2017-03-27	Nat Genet	Genome-wide association study of glioma subtypes identifies specific differences in genetic susceptibility to glioblastoma and non-glioblastoma tumors.	Non-glioblastoma glioma	5,819 European ancestry cases, 18,190 European ancestry controls.	NA	7p11.2	EGFR	rs75061358-G	0.099	2E-8		1.28	1.18-1.40	Illumina [at least 6769856] (imputed)	N
1003	chr7	54916279	54916280	rs75061358	28346443	Melin BS	2017-03-27	Nat Genet	Genome-wide association study of glioma subtypes identifies specific differences in genetic susceptibility to glioblastoma and non-glioblastoma tumors.	Glioma	12,469 European ancestry cases, 18,190 European ancestry controls.	NA	7p11.2	EGFR	rs75061358-G	0.099	4E-27		1.42	1.33-1.52	Illumina [at least 6887412] (imputed)	N
1003	chr7	54916279	54916280	rs75061358	28346443	Melin BS	2017-03-27	Nat Genet	Genome-wide association study of glioma subtypes identifies specific differences in genetic susceptibility to glioblastoma and non-glioblastoma tumors.	Glioblastoma	6,191 European ancestry cases, 18,190 European ancestry controls.	NA	7p11.2	EGFR	rs75061358-G	0.099	5E-34		1.63	1.50-1.76	Illumina [at least 6790270] (imputed)	N
1003	chr7	54916279	54916280	rs75061358	26424050	Kinnersley B	2015-10-01	Nat Commun	Genome-wide association study identifies multiple susceptibility loci for glioma.	Non-glioblastoma glioma	2,364 Northern European ancestry cases, 7,435 Northern European ancestry controls	up to 1,490 European ancestry cases, up to 1,723 European ancestry controls	7p11.2	NR	rs75061358-G	NR	3E-6		1.36	[1.20-1.55]	Illumina [at least 8427548] (imputed)	N
1003	chr7	54916279	54916280	rs75061358	26424050	Kinnersley B	2015-10-01	Nat Commun	Genome-wide association study identifies multiple susceptibility loci for glioma.	Glioma	1,783 Northern European ancestry glioblastoma cases,  2,364 Northern European ancestry non-glioblastoma cases, 7,435 Northern European ancestry controls	1,490 European ancestry cases, 1,723 European ancestry control	7p11.2	NR	rs75061358-G	NR	2E-11		1.42	[1.28-1.57]	Illumina [at least 8427548] (imputed)	N
1003	chr7	54916279	54916280	rs75061358	26424050	Kinnersley B	2015-10-01	Nat Commun	Genome-wide association study identifies multiple susceptibility loci for glioma.	Glioblastoma	1,783 Northern European ancestry cases, 7,435 Northern European ancestry controls	up to 1,490 European ancestry cases, up to 1,723 European ancestry controls	7p11.2	NR	rs75061358-G	NR	6E-11		1.59	[1.39-1.83]	Illumina [at least 8427548] (imputed)	N
1003	chr7	54917916	54917917	rs143261448	32141793	Garman L	2020-03-06	Ocul Immunol Inflamm	Genome-Wide Association Study of Ocular Sarcoidosis Confirms HLA Associations and Implicates Barrier Function and Autoimmunity in African Americans.	Ocular sarcoidosis	260 African American cases, 1,551 African American controls	NA	7p11.2	NR	rs143261448-T	NR	2E-6		3.415	[2.05-5.69]	Illumina [13976150] (imputed)	N
1004	chr7	54920905	54920906	rs149352678	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	7p11.2		rs149352678-T	0.12	1E-25		10.47	z score increase	Affymetrix [9061022] (imputed)	N
1004	chr7	54920905	54920906	rs149352678	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	7p11.2		rs149352678-T	0.12	2E-17		8.49	z score increase	Affymetrix [9061022] (imputed)	N
1004	chr7	54920905	54920906	rs149352678	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	7p11.2	NR	rs149352678-T	0.0919	5E-12				NR [9056863] (imputed)	N
1004	chr7	54920905	54920906	rs149352678	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	7p11.2	NR	rs149352678-T	0.0919	6E-15				NR [9056863] (imputed)	N
1004	chr7	54941327	54941328	rs76928645	34006833	Elvsashagen T	2021-05-18	Nat Commun	The genetic architecture of the human thalamus and its overlap with ten common brain disorders.	Thalamus volume	30,114 white British ancestry individuals			SNORA73	rs76928645-T	0.1032	7E-19		67.4038	[52.52-82.29] unit increase	Affymetrix [8165723] (imputed)	N
1004	chr7	54941327	54941328	rs76928645	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (min-P)	26,502 European ancestry individuals	NA		CNTN2, TMEM81, RBBP5, DSTYK, TMCC2, NUAK2	rs76928645-?		8E-9				NR [7428630] (imputed)	N
1004	chr7	54941327	54941328	rs76928645	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA		MOBP	rs76928645-?		5E-30				NR [7428630] (imputed)	N
1004	chr7	54941327	54941328	rs76928645	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (min-P)	26,502 European ancestry individuals	NA		BCL11A	rs76928645-?		3E-8				NR [7428630] (imputed)	N
1004	chr7	54941327	54941328	rs76928645	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA		NR	rs76928645-?	NR	9E-10	(right thalamus proper)			NR [9227495] (imputed)	N
1004	chr7	54941327	54941328	rs76928645	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA		NR	rs76928645-?	NR	3E-11	(left thalamus proper)			NR [9227495] (imputed)	N
1004	chr7	54944919	54944920	rs151057105	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	7p11.2	NR	rs151057105-?		3E-30				NR [7428630] (imputed)	N
1004	chr7	54944919	54944920	rs151057105	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	7p11.2	NR	rs151057105-?	NR	8E-17	(right ventral DC)			NR [9227495] (imputed)	N
1004	chr7	54944919	54944920	rs151057105	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	7p11.2	NR	rs151057105-?	NR	4E-16	(left ventral DC)			NR [9227495] (imputed)	N
1004	chr7	54949255	54949256	rs74504435	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	7p11.2	NR	rs74504435-G	0.101869461696237	2E-8		0.008569431	[0.0056-0.0115] unit decrease	NR [NR]	N
1004	chr7	54966737	54966738	rs77126132	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	7p11.2		rs77126132-A	0.12	9E-16		8.03	z score increase	Affymetrix [9061022] (imputed)	N
1004	chr7	54966737	54966738	rs77126132	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	7p11.2	NR	rs77126132-?	NR	3E-8	(total brain volume)			NR [9227495] (imputed)	N
1004	chr7	54978923	54978924	rs2252586	21531791	Sanson M	2011-04-29	Hum Mol Genet	Chromosome 7p11.2 (EGFR) variation influences glioma risk.	Glioma	4,147 European ancestry cases, 7,435 European ancestry controls	NA	7p11.2	EGFR	rs2252586-T	0.296	8E-8		1.18	[1.11-1.25]	Illumina [424460]	N
1004	chr7	54986655	54986656	rs2538079	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	7p11.2	NR	rs2538079-?	NR	2E-6				Affymetrix [NR]	N
1004	chr7	54990765	54990766	rs140007287	29532581	Hallfors J	2018-03-13	Addict Biol	Genome-wide association study in Finnish twins highlights the connection between nicotine addiction and neurotrophin signaling pathway.	Smoking behaviour (maximum cigarettes in a 24 hour period)	1,711 Finnish ancestry ever smoker individuals from up to 739 families	NA	7p11.2	NR	rs140007287-A	0.014095	3E-6		10.07175	[5.89-14.25] unit increase	Illumina [9469131] (imputed)	N
1004	chr7	54994482	54994483	rs11765408	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	7p11.2	NR	rs11765408-?	NR	5E-8	(left thalamus proper)			NR [9227495] (imputed)	N
1004	chr7	55012096	55012097	rs142461330	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	7p11.2	NR	rs142461330-?		4E-14	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
1004	chr7	55012096	55012097	rs142461330	31636452	Satizabal CL	2019-10-21	Nat Genet	Genetic architecture of subcortical brain structures in 38,851 individuals.	Thalamus volume	34,464 European ancestry individuals	341 South East and East Asian ancestry individuals, 769 African American individuals	7p11.2	NR	rs142461330-T	0.9193	4E-9		5.897	NR z score decrease	Affymetrix, Illumina [NR] (imputed)	N
1004	chr7	55015504	55015505	rs6979446	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	7p11.2	NR	rs6979446-?		4E-13	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
1004	chr7	55050102	55050103	rs55982832	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	7p11.2		rs55982832-A	NR	3E-8		0.0156	[0.01-0.021] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
1005	chr7	55075806	55075807	rs4947962	26503763	Song J	2015-10-27	Mol Psychiatry	Genome-wide association study identifies SESTD1 as a novel risk gene for lithium-responsive bipolar disorder.	Subjective response to lithium treatment	1,639  European ancestry bipolar disorder responder cases, 8,899 European ancestry controls	NA	7p11.2	EGFR	rs4947962-G	0.11	1E-6		1.35	[NR]	Affymetrix, Illumina [> 8000000] (imputed)	N
1005	chr7	55112409	55112410	rs11760406	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	7p11.2	NR	rs11760406-?		4E-9	(Posterior limb of internal capsule)			NR [8955960] (imputed)	N
1005	chr7	55119500	55119501	rs73133463	30276832	Edwards AC	2018-10-01	Alcohol Clin Exp Res	Meta-Analysis of Genetic Influences on Initial Alcohol Sensitivity.	Initial alcohol sensitivity	6,039 European ancestry individuals, 892 African ancestry individuals, 408 American ancestry individuals	NA	7p11.2	EGFR	rs73133463-?	NR	9E-6				Affymetrix, Illumina [15642250] (imputed)	N
1005	chr7	55124828	55124829	rs7795564	33888516	Zheng T	2021-04-22	Gut	Genome-wide analysis of 944 133 individuals provides insights into the etiology of haemorrhoidal disease.	Haemorrhoidal disease	218,920 European ancestry cases, 725,213 European ancestry controls	NA	7p11.2	EGFR	rs7795564-?	0.3923	3E-13		0.97	[0.96-0.98]	Affymetrix, Illumina [8494288] (imputed)	N
1005	chr7	55134871	55134872	rs723527	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	7p11.2	NR	rs723527-?		9E-9	(Posterior limb of internal capsule)			NR [8955960] (imputed)	N
1005	chr7	55134871	55134872	rs723527	30152087	Ostrom QT	2018-08-27	Int J Cancer	Age-specific genome-wide association study in glioblastoma identifies increased proportion of 'lower grade glioma'-like features associated with younger age.	Glioblastoma (age-stratified)	1,533 cases diagnosed below median age, 1,476 cases diagnosed at median age, 1,503 cases diagnosed above median age, 10,582 controls,	NA	7p11.2	EGFR	rs723527-A	NR	2E-9	(Median age-at-diagnosis)	1.28	[1.18-1.39]	NR [NR] (imputed)	N
1005	chr7	55134871	55134872	rs723527	30152087	Ostrom QT	2018-08-27	Int J Cancer	Age-specific genome-wide association study in glioblastoma identifies increased proportion of 'lower grade glioma'-like features associated with younger age.	Glioblastoma (age-stratified)	1,533 cases diagnosed below median age, 1,476 cases diagnosed at median age, 1,503 cases diagnosed above median age, 10,582 controls,	NA	7p11.2	EGFR	rs723527-A	NR	2E-11	(Above median age-at-diagnosis)	1.32	[1.21-1.43]	NR [NR] (imputed)	N
1005	chr7	55134871	55134872	rs723527	28346443	Melin BS	2017-03-27	Nat Genet	Genome-wide association study of glioma subtypes identifies specific differences in genetic susceptibility to glioblastoma and non-glioblastoma tumors.	Glioblastoma	6,191 European ancestry cases, 18,190 European ancestry controls.	NA	7p11.2	EGFR	rs723527-A	0.573	5E-23		1.25	1.20-1.31	Illumina [at least 6790270] (imputed)	N
1005	chr7	55141475	55141476	rs4140770	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	7p11.2	EGFR	rs4140770-G	0.336938	4E-9		0.01380693	[0.0092-0.0184] unit increase	Affymetrix [93095623] (imputed)	N
1005	chr7	55141475	55141476	rs4140770	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	7p11.2	NR	rs4140770-A	0.663409	4E-10		0.012441	[0.0086-0.0163] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
1005	chr7	55147477	55147478	rs10245472	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	7p11.2	NR	rs10245472-A	0.176635	2E-10		0.015883	[0.011-0.021] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1005	chr7	55148074	55148074	rs59060240	26424050	Kinnersley B	2015-10-01	Nat Commun	Genome-wide association study identifies multiple susceptibility loci for glioma.	Glioma	1,783 Northern European ancestry glioblastoma cases,  2,364 Northern European ancestry non-glioblastoma cases, 7,435 Northern European ancestry controls	1,490 European ancestry cases, 1,723 European ancestry control	7p11.2	NR	rs59060240-T	NR	2E-8		1.2820514	[1.18-1.39]	Illumina [at least 8427548] (imputed)	N
1005	chr7	55148074	55148074	rs59060240	26424050	Kinnersley B	2015-10-01	Nat Commun	Genome-wide association study identifies multiple susceptibility loci for glioma.	Glioblastoma	1,783 Northern European ancestry cases, 7,435 Northern European ancestry controls	up to 1,490 European ancestry cases, up to 1,723 European ancestry controls	7p11.2	NR	rs59060240-T	NR	4E-9		1.4084507	[1.25-1.59]	Illumina [at least 8427548] (imputed)	N
1005	chr7	55152666	55152667	rs7785013	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	7p11.2	NR	rs7785013-?	NR	2E-10				Affymetrix [NR]	N
1005	chr7	55154635	55154636	rs759169	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	7p11.2	EGFR	rs759169-C	0.858545	3E-9		0.01896003	[0.013-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1005	chr7	55156418	55156419	rs12535226	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	7p11.2	EGFR	rs12535226-A	0.476674	1E-17		0.01933931	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1005	chr7	55159348	55159349	rs11979158	30152087	Ostrom QT	2018-08-27	Int J Cancer	Age-specific genome-wide association study in glioblastoma identifies increased proportion of 'lower grade glioma'-like features associated with younger age.	Glioblastoma (age-stratified)	1,533 cases diagnosed below median age, 1,476 cases diagnosed at median age, 1,503 cases diagnosed above median age, 10,582 controls,	NA	7p11.2	EGFR	rs11979158-A	NR	6E-8	(Median age-at-diagnosis)	1.35	[1.21-1.50]	NR [NR] (imputed)	N
1005	chr7	55159348	55159349	rs11979158	30152087	Ostrom QT	2018-08-27	Int J Cancer	Age-specific genome-wide association study in glioblastoma identifies increased proportion of 'lower grade glioma'-like features associated with younger age.	Glioblastoma (age-stratified)	1,533 cases diagnosed below median age, 1,476 cases diagnosed at median age, 1,503 cases diagnosed above median age, 10,582 controls,	NA	7p11.2	EGFR	rs11979158-A	NR	2E-10	(Above median age-at-diagnosis)	1.42	[1.27-1.58]	NR [NR] (imputed)	N
1005	chr7	55159348	55159349	rs11979158	29743610	Ostrom QT	2018-05-09	Sci Rep	Sex-specific glioma genome-wide association study identifies new risk locus at 3p21.31 in females, and finds sex-differences in risk at 8q24.21.	Glioma	4,831 European ancestry male cases, 3,206 European ancestry female cases, 5,216 European ancestry male controls, 5,470 European ancestry female controls	NA	7p11.2	EGFR	rs11979158-A	NR	5E-12	(males)	1.33	[1.23-1.44]	Affymetrix, Illumina [NR] (imputed)	N
1005	chr7	55159348	55159349	rs11979158	29743610	Ostrom QT	2018-05-09	Sci Rep	Sex-specific glioma genome-wide association study identifies new risk locus at 3p21.31 in females, and finds sex-differences in risk at 8q24.21.	Glioblastoma	2,835 European ancestry male cases, 1,682 European ancestry female cases, 5,216 European ancestry male controls, 5,470 European ancestry female controls	NA	7p11.2	EGFR	rs11979158-A	NR	1E-12	(males)	1.4	[1.28-1.54]	Affymetrix, Illumina [NR] (imputed)	N
1005	chr7	55159348	55159349	rs11979158	21531791	Sanson M	2011-04-29	Hum Mol Genet	Chromosome 7p11.2 (EGFR) variation influences glioma risk.	Glioma	4,147 European ancestry cases, 7,435 European ancestry controls	NA	7p11.2	EGFR	rs11979158-A	0.83	7E-8		1.23	[1.15-1.35]	Illumina [424460]	N
1005	chr7	55160537	55160538	rs4947490	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	7p11.2		rs4947490-G	NR	4E-11		0.0161	[0.011-0.021] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1005	chr7	55160537	55160538	rs4947490	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	7p11.2	EGFR	rs4947490-G	0.680256	6E-18		0.020843972	[0.016-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1005	chr7	55160537	55160538	rs4947490	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	7p11.2	EGFR	rs4947490-G	0.680262	1E-12		0.017094057	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1005	chr7	55160537	55160538	rs4947490	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	7p11.2	EGFR	rs4947490-A	0.680223	2E-9		0.0139857	[0.0094-0.0186] unit decrease	Affymetrix [93095623] (imputed)	N
1005	chr7	55160537	55160538	rs4947490	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p11.2	NR	rs4947490-G	0.744093	3E-15				Affymetrix, Illumina [24588908] (imputed)	N
1005	chr7	55160537	55160538	rs4947490	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	7p11.2	NR	rs4947490-G	0.68131	1E-16		0.016254	[0.012-0.02] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1005	chr7	55173674	55173675	rs12671550	29532581	Hallfors J	2018-03-13	Addict Biol	Genome-wide association study in Finnish twins highlights the connection between nicotine addiction and neurotrophin signaling pathway.	Nicotine dependence symptom count	1,715 Finnish ancestry ever smoker individuals from 739 families	NA	7p11.2	NR	rs12671550-G	0.39	4E-6		0.29	[0.17-0.41] unit decrease	Illumina [9469131] (imputed)	N
1006	chr7	55187137	55187138	rs9649847	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	L1-L4 bone mineral density x serum urate levels interaction	2,207 men, 2,354 women	NA		EGFR	rs9649847-?	NR	6E-6	(male)	0.52952	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1006	chr7	55189214	55189215	rs17172445	30306274	Shah RL	2018-10-10	Hum Genet	Genome-wide association studies for corneal and refractive astigmatism in UK Biobank demonstrate a shared role for myopia susceptibility loci.	Refractive astigmatism	88,005 European ancestry individuals		7p11.2	EGFR	rs17172445-G	0.973	1E-6		0.043	[0.025-0.061] dioptres decrease	NR [5900115] (imputed)	N
1006	chr7	55192962	55192963	rs12718945	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	7p11.2	NR	rs12718945-G	0.5535	4E-6	(EA)	0.0289	[0.017-0.041] unit decrease	Illumina [~ 11800000] (imputed)	N
1007	chr7	55395389	55395390	rs1997103	27958378	Floyd JS	2016-12-13	Pharmacogenomics J	Large-scale pharmacogenomic study of sulfonylureas and the QT, JT and QRS intervals: CHARGE Pharmacogenomics Working Group.	QRS interval (sulfonylurea treatment interaction)	2,095 European ancestry exposed individuals, 42,907 European ancestry unexposed individuals, 1,167 African American exposed individuals, 10,564 African American unexposed individuals, 794 Hispanic/Latino American exposed individuals, 14,330 Hispanic/Latino American unexposed individuals	NA	7p11.2	LANCL2, ELDR	rs1997103-?	NR	6E-8	(AA)	9.0	[5.67-12.33] ms decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1007	chr7	55432905	55432906	rs200444745	30718321	Sanchez-Roige S	2019-02-04	J Neurosci	Genome-wide association studies of impulsive personality traits (BIS-11 and UPPSP) and drug experimentation in up to 22,861 adult research participants identify loci in the CACNA1I and CADM2 genes.	Impulsivity	21,495 European ancestry individuals	NA	7p11.2	EGFR, LANCL2	rs200444745-?	0.9921	1E-6		2.87	[1.719-4.020] unit increase	Illumina [11508759] (imputed)	N
1008	chr7	55447207	55447208	rs62457860	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Spatial processing	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	7p11.2	LANCL2	rs62457860-C	NR	6E-6		0.13151115	[0.071-0.192] unit decrease	Illumina [> 6200000] (imputed)	N
1009	chr7	55583840	55583841	rs6950027	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	7p11.2	LANCL2	rs6950027-?	NR	8E-6	(TAG 50:1)	0.19306158	[0.11-0.28] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1009	chr7	55671628	55671629	rs539325600	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris color (b* coordinate)	329 South Asian ancestry individuals		7p11.2	intergenic	rs539325600-A	0.012	7E-6		2.304	[1.31-3.3] unit increase	Illumina [640625] (imputed)	N
1010	chr7	55724444	55724445	rs9656709	23942779	McGue M	2013-08-14	Behav Genet	A genome-wide association study of behavioral disinhibition.	Behavioural disinhibition (generation interaction)	3,852 European ancestry parents, 3,336 European ancestry offspring	NA	7p11.2	NR	rs9656709-C	0.488	5E-6	(Alcohol consumption)			Illumina [527829]	N
1010	chr7	55793263	55793264	rs546743016	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p11.2	NR	rs546743016-G	7.68305E-4	4E-10				Affymetrix, Illumina [24332387] (imputed)	N
1010	chr7	55802062	55802063	rs6972291	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	7p11.2	NR	rs6972291-C	0.3457	2E-9		0.0283	[0.019-0.038] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1010	chr7	55803969	55803970	rs6593279	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	7p11.2		rs6593279-A	NR	2E-21		0.0147	[0.012-0.018] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1011	chr7	55838544	55838545	rs11766051	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels	1,338 Japanese ancestry individuals	NA	7p11.2	PSPHL	rs11766051-G	0.41	9E-15	(Ser)	0.28	[0.2-0.36] unit decrease	Illumina [1288202] (imputed)	N
1011	chr7	55848789	55848790	rs6966061	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for twenty other PFAAs)	1,338 Japanese ancestry individuals	NA	7p11.2	PSPHL	rs6966061-A		9E-13	(Ser)	0.18	[0.14-0.22] unit decrease	Illumina [1288202] (imputed)	N
1011	chr7	55901446	55901447	rs28895377	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	7p11.2	SEPT14	rs28895377-A	0.8847	2E-16		0.0243	[0.018-0.03] unit increase	Affymetrix [18391927] (imputed)	N
1011	chr7	55922322	55922323	rs7786410	24939585	Fransen E	2014-06-18	Eur J Hum Genet	Genome-wide association analysis demonstrates the highly polygenic character of age-related hearing impairment.	Age-related hearing impairment	1,489 European ancestry individuals	NA	7p11.2	sep/14	rs7786410-?		8E-6	(PC1)	0.1548	[NR] unit decrease	Illumina [4167292] (imputed)	N
1011	chr7	55937440	55937441	rs7803882	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Alanine transaminase levels	134,182 Japanese ancestry individuals	NA	7p11.2	SEPT14, ZNF713	rs7803882-?	NR	4E-9		0.02403	[0.016-0.032] unit increase	Illumina [6108953] (imputed)	N
1011	chr7	55950946	55950947	rs11761352	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for twenty other PFAAs)	1,338 Japanese ancestry individuals	NA	7p11.2	SEPT14	rs11761352-C		4E-19	(Ser)	0.23	[0.19-0.27] unit decrease	Illumina [1288202] (imputed)	N
1011	chr7	55950946	55950947	rs11761352	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels	1,338 Japanese ancestry individuals	NA	7p11.2	SEPT14	rs11761352-C	0.38	9E-17	(Ser)	0.3	[0.22-0.38] unit decrease	Illumina [1288202] (imputed)	N
1011	chr7	55956436	55956436	rs371273023	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	7p11.2		rs371273023-ATGCGTACATACG	0.386557	2E-15		0.0164219	[0.012-0.02] unit decrease	Illumina [13479295] (imputed)	N
1011	chr7	55956436	55956436	rs371273023	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	7p11.2	ZNF713	rs371273023-?	NR	9E-17		0.02441536	[0.019-0.03] unit decrease	Illumina [27896057] (imputed)	N
1012	chr7	55984953	55984953	rs565050730	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	7p11.2	ZNF713	rs565050730-GA	0.334	4E-8		1.04	[1.03-1.06]	Affymetrix, Illumina [11800000] (imputed)	N
1012	chr7	55991143	55991144	rs2135116	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for twenty other PFAAs)	1,338 Japanese ancestry individuals	NA	7p11.2	ZNF713	rs2135116-A		1E-22	(Ser)	0.25	[0.19-0.31] unit decrease	Illumina [1288202] (imputed)	N
1012	chr7	55991143	55991144	rs2135116	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels	1,338 Japanese ancestry individuals	NA	7p11.2	ZNF713	rs2135116-A	0.36	1E-19	(Ser)	0.33	[0.25-0.41] unit decrease	Illumina [1288202] (imputed)	N
1012	chr7	56000217	56000218	rs560404165	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	7p11.2	CHCHD2	rs560404165-CA	0.6051	8E-11	(Serine)	0.0721	[0.05-0.094] unit increase	Illumina [~ 47000000] (imputed)	N
1012	chr7	56018665	56018666	rs12671091	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for twenty other PFAAs)	1,338 Japanese ancestry individuals	NA	7p11.2	MRPS17	rs12671091-T		4E-20	(Ser)	0.23	[0.19-0.27] unit decrease	Illumina [1288202] (imputed)	N
1012	chr7	56018665	56018666	rs12671091	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels	1,338 Japanese ancestry individuals	NA	7p11.2	MRPS17	rs12671091-T	0.48	2E-16	(Ser)	0.29	[0.23-0.35] unit decrease	Illumina [1288202] (imputed)	N
1012	chr7	56036023	56036024	rs10237524	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p11.2	NR	rs10237524-A	0.329971	9E-19				Affymetrix, Illumina [23472807] (imputed)	N
1012	chr7	56036023	56036024	rs10237524	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	7p11.2	NR	rs10237524-A	0.330226	1E-21		0.019182	[0.015-0.023] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1012	chr7	56045447	56045448	rs4535700	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for twenty other PFAAs)	1,338 Japanese ancestry individuals	NA	7p11.2	GBAS	rs4535700-T		5E-22	(Ser)	0.25	[0.19-0.31] unit decrease	Illumina [1288202] (imputed)	N
1012	chr7	56045447	56045448	rs4535700	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels	1,338 Japanese ancestry individuals	NA	7p11.2	GBAS	rs4535700-T	0.37	4E-21	(Ser)	0.34	[0.26-0.42] unit decrease	Illumina [1288202] (imputed)	N
1012	chr7	56045447	56045448	rs4535700	28250457	Scerri TS	2017-02-27	Nat Genet	Genome-wide analyses identify common variants associated with macular telangiectasia type 2.	Macular telangiectasia type 2	476 European ancestry cases, 1,733 European ancestry controls	172 European ancestry cases, 1,134 European ancestry controls	7p11.2	PSPH	rs4535700-T	0.2548	7E-8		1.43	[1.26-1.63]	Illumina [6310381] (imputed)	N
1012	chr7	56050524	56050525	rs35844144	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	7p11.2		rs35844144-T	NR	9E-11		0.0139	[0.0098-0.018] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1012	chr7	56050524	56050525	rs35844144	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	7p11.2		rs35844144-T	NR	1E-8		0.0135	[0.0088-0.0182] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
1012	chr7	56050524	56050525	rs35844144	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	7p11.2		rs35844144-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1012	chr7	56054675	56054675	rs200129346	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	7p11.2		rs200129346-AT	NR	6E-13		0.0182	[0.013-0.023] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
1012	chr7	56056570	56056571	rs4948097	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p11.2	NR	rs4948097-G	0.723378	2E-16				Affymetrix, Illumina [24649327] (imputed)	N
1012	chr7	56056570	56056571	rs4948097	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	7p11.2	NR	rs4948097-G	0.758343	3E-16		0.017568	[0.013-0.022] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1012	chr7	56056570	56056571	rs4948097	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	7p11.2	NR	rs4948097-G	0.758504	3E-11		0.014925	[0.011-0.019] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
1012	chr7	56062937	56062938	rs3217415	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	7p11.2	GBAS	rs3217415-G	0.329677	1E-15		0.018900197	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1012	chr7	56067015	56067016	rs4689	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	7p11.2	GBAS	rs4689-T	0.759774	9E-12		0.017599434	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1012	chr7	56067015	56067016	rs4689	30837465	Wittemans LBL	2019-03-05	Nat Commun	Assessing the causal association of glycine with risk of cardio-metabolic diseases.	Glycine levels	80,003 European ancestry individuals	NA	7p11.2	NR	rs4689-T	0.7706	3E-12	(conditional)			Affymetrix, Illumina [NR] (imputed)	N
1012	chr7	56068713	56068714	rs6954499	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	7p11.2		rs6954499-?	NR	4E-14				NR [~ 8900000] (imputed)	N
1012	chr7	56071382	56071383	rs551513405	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	21,147 European ancestry cases, 434,460 European ancestry controls	NA	7p11.2	GBAS	rs551513405-A	1.6E-4	2E-8		3.05	[1.83-4.28]	NR [10849711] (imputed)	N
1012	chr7	56072009	56072010	rs7800001	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycine levels	114,978 European ancestry individuals	NA	7p11.2		rs7800001-T	0.244725	7E-57		0.0722484	[0.063-0.081] unit decrease	NR [11722792] (imputed)	N
1012	chr7	56072009	56072010	rs7800001	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	7p11.2	NR	rs7800001-C	NR	3E-9		0.0164	[0.011-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
1012	chr7	56072009	56072010	rs7800001	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7p11.2	NR	rs7800001-C	0.731641	3E-10				Affymetrix, Illumina [23114412] (imputed)	N
1012	chr7	56072249	56072250	rs4948099	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	7p11.2	NIPSNAP2	rs4948099-C	0.245154	4E-10		0.00271597	[0.0018-0.0036] unit increase	Affymetrix [13995440] (imputed)	N
1012	chr7	56072840	56072841	rs4948100	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Alanine aminotransferase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	7p11.2	NIPSNAP2, PSPH	rs4948100-?		3E-8		0.0218	[0.014-0.029] unit increase	Illumina [31500000] (imputed)	N
1012	chr7	56072840	56072841	rs4948100	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	7p11.2	ZNF713, PSPH, CCT6A, GBAS	rs4948100-C	0.3796	1E-8		5.704	NR z score increase	Illumina [26237160] (imputed)	N
1012	chr7	56079093	56079094	rs4947534	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	7p11.2		rs4947534-C	NR	2E-13		0.0155	[0.011-0.02] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
1012	chr7	56079093	56079094	rs4947534	30837465	Wittemans LBL	2019-03-05	Nat Commun	Assessing the causal association of glycine with risk of cardio-metabolic diseases.	Glycine levels	80,003 European ancestry individuals	NA	7p11.2	PSPH	rs4947534-C	0.76	7E-34		0.072	[0.058-0.086] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1012	chr7	56079093	56079094	rs4947534	26068415	Draisma HHM	2015-06-12	Nat Commun	Genome-wide association study identifies novel genetic variants contributing to variation in blood metabolite levels.	Amino acid levels	up to 7,478 European ancestry individuals	1,182 European ancestry individuals	7p11.2	PSPH	rs4947534-T	0.2426	4E-18	(Serine)	0.0406	[0.031-0.05] unit decrease	Affymetrix, Illumina [at least 296619] (imputed)	N
1012	chr7	56079093	56079094	rs4947534	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	7p11.2	PSPH	rs4947534-T	0.25	2E-14	(serine)	0.018	[0.014-0.022] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
1012	chr7	56080425	56080426	rs62457261	30837465	Wittemans LBL	2019-03-05	Nat Commun	Assessing the causal association of glycine with risk of cardio-metabolic diseases.	Glycine levels	80,003 European ancestry individuals	NA	7p11.2	NR	rs62457261-G	0.5704	2E-8	(conditional)			Affymetrix, Illumina [NR] (imputed)	N
1012	chr7	56089118	56089118	rs112702219	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in non-diabetics	152,624 European ancestry individuals, 36,369 African American individuals	NA	7p11.2	PSPH	rs112702219-CT	0.508	2E-10		0.374	[0.26-0.49] unit decrease	Affymetrix [NR] (imputed)	N
1012	chr7	56090640	56090641	rs6973917	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	7p11.2	PSPH	rs6973917-T	0.25	3E-12		6.98	z-score increase	Affymetrix [4312306] (imputed)	N
1012	chr7	56097264	56097265	rs4948102	24651765	Williams SR	2014-03-20	PLoS Genet	Genome-wide meta-analysis of homocysteine and methionine metabolism identifies five one carbon metabolism loci and a novel association of ALDH1L1 with ischemic stroke.	Plasma homocysteine levels (post-methionine load test)	2,710 European and other ancestry individuals, 1,725 European ancestry individuals, 258 African ancestry individuals, 117 individuals	NA	7p11.2	PSPH	rs4948102-?		1E-16				Affymetrix, Illumina [up to 11000000] (imputed)	N
1013	chr7	56099351	56099352	rs6955423	33654266	Bonelli R	2021-03-02	Commun Biol	Identification of genetic factors influencing metabolic dysregulation and retinal support for MacTel, a retinal disorder.	Macular telangiectasia type 2	931 European ancestry cases, 3,745 European ancestry controls	NA	7p11.2	SEPT14, MRPS17, ZNF713, GBAS, PSPH, CCT6A, SUMF2, PHKG1, CHCHD2, NUPR1L	rs6955423-A	0.746	3E-7			NR	Illumina [7289516] (imputed)	N
1013	chr7	56099351	56099352	rs6955423	33654266	Bonelli R	2021-03-02	Commun Biol	Identification of genetic factors influencing metabolic dysregulation and retinal support for MacTel, a retinal disorder.	Macular telangiectasia type 2	1,067 European or unknown ancestry cases, 3,799 European or unknown ancestry controls	NA	7p11.2	SEPT14, MRPS17, ZNF713, GBAS, PSPH, CCT6A, SUMF2, PHKG1, CHCHD2, NUPR1L	rs6955423-A	0.746	6E-9		0.7	[0.62-0.79]	Illumina [7289516] (imputed)	N
1013	chr7	56099351	56099352	rs6955423	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	7p11.2	PSPH	rs6955423-G	0.326932	8E-21	(serine)	0.221	[0.17-0.27] unit decrease	Illumina [13039987] (imputed)	N
1013	chr7	56099351	56099352	rs6955423	31070104	Jia Q	2019-05-09	J Am Heart Assoc	Genetic Determinants of Circulating Glycine Levels and Risk of Coronary Artery Disease.	Glycine levels	30,118 European ancestry individuals	NA	7p11.2	PSPH	rs6955423-A	0.813183	2E-11		0.072	[0.051-0.093] unit increase	Affymetrix, Illumina [7487927] (imputed)	N
1013	chr7	56099351	56099352	rs6955423	31070104	Jia Q	2019-05-09	J Am Heart Assoc	Genetic Determinants of Circulating Glycine Levels and Risk of Coronary Artery Disease.	Glycine levels	19,112 European ancestry male individuals	NA	7p11.2	PSPH	rs6955423-A	0.813183	1E-9		0.080595	[0.055-0.107] unit increase	Affymetrix, Illumina [7487927] (imputed)	N
1013	chr7	56104387	56104388	rs4275190	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	7p11.2		rs4275190-T	NR	3E-12		0.012	[0.0087-0.0153] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
1013	chr7	56104387	56104388	rs4275190	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Age at menopause	approximately 143,000 European ancestry individuals	NA	7p11.2		rs4275190-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1013	chr7	56112216	56112217	rs35210477	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for twenty other PFAAs)	1,338 Japanese ancestry individuals	NA	7p11.2	PSPH	rs35210477-A		7E-12	(Ser)	0.21	[0.15-0.27] unit increase	Illumina [1288202] (imputed)	N
1013	chr7	56112216	56112217	rs35210477	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels	1,338 Japanese ancestry individuals	NA	7p11.2	PSPH	rs35210477-A	0.2	7E-11	(Ser)	0.29	[0.21-0.37] unit increase	Illumina [1288202] (imputed)	N
1013	chr7	56112604	56112604	rs36090435	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	7p11.2	NR	rs36090435-TA	NR	1E-9		0.0157	[0.011-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
1013	chr7	56120880	56120881	rs7793921	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	7p11.2		rs7793921-A	NR	2E-9		0.0115	[0.0078-0.0152] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
1013	chr7	56120880	56120881	rs7793921	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for twenty other PFAAs)	1,338 Japanese ancestry individuals	NA	7p11.2	CCT6A	rs7793921-G		1E-24	(Ser)	0.26	[0.22-0.3] unit decrease	Illumina [1288202] (imputed)	N
1013	chr7	56120880	56120881	rs7793921	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels	1,338 Japanese ancestry individuals	NA	7p11.2	CCT6A	rs7793921-G	0.39	2E-21	(Ser)	0.34	[0.28-0.4] unit decrease	Illumina [1288202] (imputed)	N
1013	chr7	56120880	56120881	rs7793921	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7p11.2		rs7793921-?	NR	2E-21				NR [~ 8900000] (imputed)	N
1013	chr7	56121303	56121304	rs10255049	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	7p11.2	CCT6A	rs10255049-G	NR	6E-9		0.0192743	[0.013-0.026] unit decrease	Affymetrix [323123] (imputed)	N
1013	chr7	56122057	56122058	rs6593297	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	7p11.2	CCT6A	rs6593297-?	NR	4E-9		0.0307666	[0.021-0.041] unit decrease	Illumina [4804024] (imputed)	N
1013	chr7	56122057	56122058	rs6593297	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	7p11.2	CCT6A	rs6593297-A	0.2999	8E-9		0.1581	[0.1-0.21] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1013	chr7	56139504	56139505	rs7806994	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	7p11.2	NR	rs7806994-?	NR	6E-6				Affymetrix [5486770] (imputed)	N
1013	chr7	56146955	56146956	rs13244654	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for twenty other PFAAs)	1,338 Japanese ancestry individuals	NA	7p11.2	SUMF2, PSPH	rs13244654-T		1E-25	(Ser)	0.28	[0.22-0.34] unit decrease	Illumina [1288202] (imputed)	N
1013	chr7	56146955	56146956	rs13244654	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for twenty other PFAAs)	1,338 Japanese ancestry individuals	NA	7p11.2	PSPH	rs13244654-?		1E-25	(Ser)	0.28	[-0.3668-0.9268] unit decrease	Illumina [1288202] (imputed)	N
1013	chr7	56146955	56146956	rs13244654	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for one other PFAA)	1,338 Japanese ancestry individuals	NA	7p11.2	PSPH	rs13244654-?		7E-21	(Ser (adjusted for Phe))			Illumina [1288202] (imputed)	N
1013	chr7	56146955	56146956	rs13244654	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for one other PFAA)	1,338 Japanese ancestry individuals	NA	7p11.2	PSPH	rs13244654-?		5E-22	(Ser (adjusted for Pro))			Illumina [1288202] (imputed)	N
1013	chr7	56146955	56146956	rs13244654	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for one other PFAA)	1,338 Japanese ancestry individuals	NA	7p11.2	PSPH	rs13244654-?		4E-8	(Thr (adjusted for Ser))			Illumina [1288202] (imputed)	N
1013	chr7	56146955	56146956	rs13244654	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for one other PFAA)	1,338 Japanese ancestry individuals	NA	7p11.2	PSPH	rs13244654-?		4E-22	(Ser (adjusted for Gln))			Illumina [1288202] (imputed)	N
1013	chr7	56146955	56146956	rs13244654	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for one other PFAA)	1,338 Japanese ancestry individuals	NA	7p11.2	PSPH	rs13244654-?		3E-18	(Ser (adjusted for Gly))			Illumina [1288202] (imputed)	N
1013	chr7	56146955	56146956	rs13244654	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for one other PFAA)	1,338 Japanese ancestry individuals	NA	7p11.2	PSPH	rs13244654-?		2E-7	(Met (adjusted for Ser))			Illumina [1288202] (imputed)	N
1013	chr7	56146955	56146956	rs13244654	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for one other PFAA)	1,338 Japanese ancestry individuals	NA	7p11.2	PSPH	rs13244654-?		1E-24	(Ser (adjusted for Asn))			Illumina [1288202] (imputed)	N
1013	chr7	56146955	56146956	rs13244654	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels	1,338 Japanese ancestry individuals	NA	7p11.2	SUMF2, PSPH	rs13244654-T	0.31	2E-21	(Ser)	0.36	[0.28-0.44] unit decrease	Illumina [1288202] (imputed)	N
1013	chr7	56151488	56151489	rs2242508	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	7p11.2	PHKG1	rs2242508-A	NR	3E-7		1.0589855	NR	Affymetrix, Illumina [8278136] (imputed)	N
1013	chr7	56151488	56151489	rs2242508	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for twenty other PFAAs)	1,338 Japanese ancestry individuals	NA	7p11.2	PHKG1	rs2242508-A		1E-25	(Ser)	0.28	[0.22-0.34] unit decrease	Illumina [1288202] (imputed)	N
1013	chr7	56151488	56151489	rs2242508	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels	1,338 Japanese ancestry individuals	NA	7p11.2	PHKG1	rs2242508-A	0.33	2E-21	(Ser)	0.36	[0.28-0.44] unit decrease	Illumina [1288202] (imputed)	N
1013	chr7	56152430	56152431	rs7783339	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	7p11.2		rs7783339-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1013	chr7	56162325	56162326	rs13234899	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	7p11.2		rs13234899-C	NR	4E-10		0.0123	[0.0084-0.0162] unit increase	Affymetrix, Illumina [20535842] (imputed)	N
1013	chr7	56164801	56164802	rs11773374	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	7p11.2		rs11773374-C	NR	3E-8		0.0113	[0.0074-0.0152] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
1013	chr7	56167594	56167595	rs4948106	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for twenty other PFAAs)	1,338 Japanese ancestry individuals	NA	7p11.2	CHCHD2	rs4948106-T		5E-21	(Ser)	0.24	[0.2-0.28] unit decrease	Illumina [1288202] (imputed)	N
1013	chr7	56170041	56170041	rs57427081	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	7p11.2	CHCHD2	rs57427081-CT	0.3008	9E-13	(Serine)	0.0754	[0.055-0.096] unit decrease	Illumina [~ 47000000] (imputed)	N
1013	chr7	56171488	56171489	rs816411	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels	1,338 Japanese ancestry individuals	NA	7p11.2	CHCHD2	rs816411-C	0.37	4E-20	(Ser)	0.33	[0.27-0.39] unit decrease	Illumina [1288202] (imputed)	N
1013	chr7	56181844	56181845	rs7782243	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for twenty other PFAAs)	1,338 Japanese ancestry individuals	NA	7p11.2	LOC389493	rs7782243-A		3E-13	(Ser)	0.2	[0.14-0.26] unit decrease	Illumina [1288202] (imputed)	N
1013	chr7	56181844	56181845	rs7782243	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels	1,338 Japanese ancestry individuals	NA	7p11.2	LOC389493	rs7782243-A	0.28	8E-12	(Ser)	0.27	[0.19-0.35] unit decrease	Illumina [1288202] (imputed)	N
1013	chr7	56187346	56187347	rs864186	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	7p11.2	NR	rs864186-T	0.16573	3E-8		0.0481635	[0.03-0.066] unit decrease	Affymetrix [17914406] (imputed)	N
1013	chr7	56197149	56197151	rs148800247	29346644	Yan Q	2018-01-15	Hum Mol Genet	Genome-wide Analysis of Disease Progression in Age-related Macular Degeneration.	Disease progression in age-related macular degeneration (adjusted for baseline)	1,105 progressed eyes and 3,912 non-progressed eyes from 2,721 European ancestry individuals	NA	7p11.2	NUPR1L, LOC650226	rs148800247-T	0.15	2E-6		1.35		Illumina [8974355] (imputed)	N
1013	chr7	56210440	56210441	rs2538054	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for twenty other PFAAs)	1,338 Japanese ancestry individuals	NA	7p11.2	LOC442309	rs2538054-A		8E-14	(Ser)	0.23	[0.17-0.29] unit decrease	Illumina [1288202] (imputed)	N
1013	chr7	56210440	56210441	rs2538054	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels	1,338 Japanese ancestry individuals	NA	7p11.2	LOC442309	rs2538054-A	0.22	2E-11	(Ser)	0.29	[0.21-0.37] unit decrease	Illumina [1288202] (imputed)	N
1013	chr7	56223738	56223739	rs34148685	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels	1,338 Japanese ancestry individuals	NA	7p11.2	LOC442309	rs34148685-T	0.2	2E-8	(Ser)	0.25	[0.17-0.33] unit increase	Illumina [1288202] (imputed)	N
1014	chr7	56235185	56235186	rs13242188	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on highest math class (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	7p11.2		rs13242188-?	NR	4E-8				NR [NR]	N
1014	chr7	56237279	56237280	rs816396	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for twenty other PFAAs)	1,338 Japanese ancestry individuals	NA	7p11.2	LOC100130909	rs816396-T		2E-11	(Ser)	0.21	[0.15-0.27] unit decrease	Illumina [1288202] (imputed)	N
1014	chr7	56237279	56237280	rs816396	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels	1,338 Japanese ancestry individuals	NA	7p11.2	LOC100130909	rs816396-T	0.2	8E-11	(Ser)	0.29	[0.21-0.37] unit decrease	Illumina [1288202] (imputed)	N
1014	chr7	56238565	56238566	rs1640581	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on Townsend deprivation index (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	7p11.2		rs1640581-?	NR	3E-8				NR [NR]	N
1014	chr7	56298603	56298604	rs4948118	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on cognitive performance (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	7p11.2		rs4948118-?	NR	4E-8				NR [NR]	N
1015	chr7	56369815	56369816	rs6954881	32595297	Kweon K	2018-04-01	Soa Chongsonyon Chongsin Uihak	Genome-Wide Analysis Reveals Four Novel Loci for Attention-Deficit Hyperactivity Disorder in Korean Youths.	Attention deficit hyperactivity disorder (inattention symptoms)	27 Korean ancestry child sibling pairs	NA	7p11.2	NUPR1L	rs6954881-G	0.472	2E-7				Affymetrix [432921]	N
1017	chr7	56718498	56718499	rs10499763	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	7p11.2	NR	rs10499763-?	NR	1E-11				Affymetrix [NR]	N
1017	chr7	56723445	56723446	rs187096292	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Skin reflectance (Melanin index)	720 South Asian ancestry individuals		7p11.2	NR	rs187096292-G	NR	5E-6	(conditioned on rs1426654)	1.2935	[0.74-1.85] unit decrease	Affymetrix, Illumina [at least 398118] (imputed)	N
1018	chr7	56855649	56855650	rs7806105	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	7p11.2	CHCHD2	rs7806105-?	NR	4E-6	(LPE 22:6)	0.3096068	[0.18-0.44] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1018	chr7	56876814	56876815	rs186390478	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial squamous cell lung carcinoma	367 European ancestry cases, 31,563 European ancestry controls	NA	7p11.2	NR	rs186390478-C	0.005	9E-6		7.44	[3.06-18.06]	Illumina [7959153] (imputed)	N
1022	chr7	57322368	57322369	rs13238329	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris color (a* coordinate)	329 South Asian ancestry individuals		7p11.2	intergenic	rs13238329-C	0.392067	3E-6		0.370102	[0.22-0.52] unit increase	Illumina [640625] (imputed)	N
1023	chr7	57440059	57440060	rs115128033	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Epithelial ovarian cancer	1,112 White British ancestry cases, 147,944 White British ancestry controls	NA	7p11.2		rs115128033-?	NR	9E-6		16.1143	[14.89-17.34]	NR [666300]	N
1024	chr7	57583855	57583856	rs11766519	24376456	Simino J	2013-12-12	Front Genet	Gene-alcohol interactions identify several novel blood pressure loci including a promising locus near SLC16A9.	Pulse pressure (alcohol consumption interaction)	up to 6,882 individuals	NA	7p11.2	ZNF716	rs11766519-C	0.13	1E-7	(Days drinks/week)	0.102	[0.067-0.137] unit decrease	Affymetrix [2500000] (imputed)	N
1024	chr7	57623506	57623507	rs530130707	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	225,112 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	445,360 individuals	7p11.2	intergenic	rs530130707-A	7.0E-4	4E-19		6.796	[5.3-8.29] mmHg increase	Affymetrix [NR] (imputed)	N
1025	chr7	57699150	57699151	rs4870684	20889312	Wang KS	2010-10-01	Schizophr Res	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	7p11.2	NR	rs4870684-?	NR	5E-6		1.2718	[NR]	Affymetrix [722112]	N
1025	chr7	57749605	57749605	rs373067567	30070759	Olsson M	2018-08-02	J Thromb Haemost	Genome-wide analysis of genetic determinants of circulating factor VII activating protease (FSAP) activity.	Plasma factor VII activating protease levels	3,126 Swedish ancestry individuals	NA	7p11.2	Intergenic	rs373067567-?		7E-7		37.0	[22.5-51.5] unit decrease	Illumina [~ 10000000] (imputed)	N
1025	chr7	57788133	57788134	rs556813706	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	225,112 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	445,360 individuals	7p11.2	intergenic	rs556813706-G	6.0E-4	3E-24		7.8601	[6.34-9.38] mmHg increase	Affymetrix [NR] (imputed)	N
1025	chr7	57799899	57799900	rs566987463	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	225,112 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	445,360 individuals	7p11.2	intergenic	rs566987463-A	7.0E-4	2E-24		8.0348	[6.49-9.58] mmHg increase	Affymetrix [NR] (imputed)	N
1026	chr7	57831854	57831855	rs533946434	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	225,112 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	445,360 individuals	7p11.2	intergenic	rs533946434-A	7.0E-4	1E-25		8.0968	[6.58-9.62] mmHg increase	Affymetrix [NR] (imputed)	N
1026	chr7	57844392	57844393	rs151224156	30898391	Lawrenson K	2019-03-19	Gynecol Oncol	Genome-wide association studies identify susceptibility loci for epithelial ovarian cancer in east Asian women.	Epithelial ovarian cancer	3,238 East Asian ancestry cases, 4,083 East Asian ancestry controls	NA	7p11.2		rs151224156-?	NR	3E-6	(overall)	1.43		Illumina [11595112] (imputed)	N
1026	chr7	57880872	57880873	rs556595229	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	225,112 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	445,360 individuals	7p11.2	intergenic	rs556595229-T	7.0E-4	4E-24		7.8547	[6.33-9.38] mmHg increase	Affymetrix [NR] (imputed)	N
1055	chr7	61665504	61665505	rs35179454	30070759	Olsson M	2018-08-02	J Thromb Haemost	Genome-wide analysis of genetic determinants of circulating factor VII activating protease (FSAP) activity.	Plasma factor VII activating protease levels	3,126 Swedish ancestry individuals	NA	7q11.1	Intergenic	rs35179454-?		1E-6		35.7	[21.39-50.01] unit decrease	Illumina [~ 10000000] (imputed)	N
1056	chr7	61762038	61762039	rs182819630	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 21, depth of nasal alae)	2,187 European ancestry individuals	NA	7q11.21	NR	rs182819630-T	0.008712	2E-6		0.7732	[0.45-1.09] unit increase	Illumina [10677593] (imputed)	N
1057	chr7	61877836	61877837	rs75517150	30070759	Olsson M	2018-08-02	J Thromb Haemost	Genome-wide analysis of genetic determinants of circulating factor VII activating protease (FSAP) activity.	Plasma factor VII activating protease levels	3,126 Swedish ancestry individuals	NA	7q11.21	Intergenic	rs75517150-?		2E-6		36.1	[21.4-50.8] unit decrease	Illumina [~ 10000000] (imputed)	N
1059	chr7	62224362	62224363	rs151051417	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	7q11.21	NR	rs151051417-?	NR	7E-6		0.36	[0.2-0.52] unit increase	Illumina [at least 560000] (imputed)	N
1061	chr7	62409534	62409535	rs193211815	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 21, depth of nasal alae)	2,187 European ancestry individuals	NA	7q11.21	NR	rs193211815-T	0.008253	3E-6		0.7881	[0.46-1.12] unit increase	Illumina [10677593] (imputed)	N
1061	chr7	62463295	62463296	rs551595223	32890573	Yan Q	2020-09-02	J Allergy Clin Immunol	A genome-wide association study of asthma hospitalizations in adults.	Exacerbations requiring hospitalisation in asthma	1,658 British ancestry cases, 32,509 British ancestry controls	NA	7q11.21	NR	rs551595223-CA	0.99	3E-6		1.85	[NR]	Affymetrix [87696888] (imputed)	N
1062	chr7	62565305	62565306	rs150493296	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7q11.21	NR	rs150493296-T	0.0122	1E-8	(AGXT)	6.613	NR unit increase	Illumina [1671387] (imputed)	N
1062	chr7	62577769	62577770	rs6956675	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	7q11.21	LOC442318	rs6956675-A	0.135	6E-6	(CRP )	0.03	[NR] ng/mL increase	Illumina [899892]	N
1066	chr7	63164141	63164142	rs191852465	31164008	Mullins N	2019-06-05	Am J Psychiatry	GWAS of Suicide Attempt in Psychiatric Disorders and Association With Major Depression Polygenic Risk Scores.	Suicide attempts in major depressive disorder	1,622 European ancestry attempters, 8,786 European ancestry nonattempters	NA	7q11.21	NR	rs191852465-C	0.030000000000000027	1E-6		2.173913	[1.59-2.94]	NR [8482392] (imputed)	N
1068	chr7	63346885	63346886	rs13437751	23459443	Avery CL	2013-03-05	Pharmacogenomics J	Drug-gene interactions and the search for missing heritability: a cross-sectional pharmacogenomics study of the QT interval.	QT interval (drug interaction)	33,781 European ancestry individuals	NA	7q11.21	GABPAP	rs13437751-T	0.09	9E-6	(UAZ Cert)			Affymetrix, Illumina [~ 2500000] (imputed)	N
1068	chr7	63354704	63354705	rs73123056	34074324	Wan JY	2021-06-01	Diabetol Metab Syndr	Genome-wide association analysis of metabolic syndrome quantitative traits in the GENNID multiethnic family study.	Triglyceride levels	281 African American individuals from 73 families, 516 European ancestry individuals from 75 families, 125 Japanese American individuals from 15 families, 598 Mexican American individuals from 96 families	NA	7q11.21	DQ599799, BC042811	rs73123056-A	0.04	2E-8	(African American)	0.81	[0.52-1.1] unit increase	Illumina [up to 13042663] (imputed)	N
1070	chr7	63662729	63662730	rs12672259	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	7q11.21	intergenic	rs12672259-A	NR	1E-6				Illumina [up to 11995908] (imputed)	N
1070	chr7	63671292	63671293	rs150557761	30487263	Pollack S	2018-11-28	Diabetes	Multiethnic Genome-wide Association Study of Diabetic Retinopathy using Liability Threshold Modeling of Duration of Diabetes and Glycemic Control.	Diabetic retinopathy (moderate NPDR and PDR)	644 European ancestry cases, 1,970 European ancestry controls, 768 African American cases, 941 African American controls	2,388 East Asian ancestry cases, 6,219 East Asian ancestry controls, 1,658 European ancestry cases, 3,019 European ancestry controls, 1,014 Hispanic cases, 1,240 Hispanic controls	7q11.21	NR	rs150557761-?	NR	3E-6	(AA)	2.0833335	[NR]	Affymetrix, Illumina [NR] (imputed)	N
1071	chr7	63726644	63726645	rs1830035	30891314	Saad MN	2019-01-18	J Adv Res	Studying the effects of haplotype partitioning methods on the RA-associated genomic results from the North American Rheumatoid Arthritis Consortium (NARAC) dataset.	Rheumatoid arthritis	868 European ancestry cases, 1,194 European ancestry controls	NA	7q11.21	ZNF679	rs1830035-A	0.963	1E-11				NR [509413]	N
1071	chr7	63733330	63733331	rs10266483	20339536	Barber MJ	2010-03-22	PLoS One	Genome-wide association of lipid-lowering response to statins in combined study populations.	Response to statin therapy	3,928 European ancestry individuals	NA	7q11.21	ZNF679, LOC728927, LOC442320	rs10266483-A	0.35	8E-6	(LDL, sum)			Illumina [~ 2500000] (imputed)	N
1071	chr7	63758738	63758739	rs1531556	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	7q11.21	ZNF107	rs1531556-?	NR	7E-7	(3-phosphoglyceric acid)	0.19829933	[0.12-0.28] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1071	chr7	63761357	63761358	rs4562194	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	7q11.21	NR	rs4562194-?	NR	4E-9				Affymetrix [NR]	N
1071	chr7	63829981	63829982	rs73137633	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ASL	5,366 Icelandic ancestry individuals	NA	7q11.21		rs73137633-G	0.0137	7E-14		0.611129	[0.45-0.77] unit decrease	Illumina [7506463] (imputed)	N
1073	chr7	63970606	63970608	rs34256475	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	7q11.21	NR	rs34256475-T	NR	7E-10		0.0166	[0.011-0.022] unit increase	Affymetrix [9000000] (imputed)	N
1073	chr7	64015378	64015379	rs7784802	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	7q11.21		rs7784802-?	NR	3E-10		0.0133202	[0.0092-0.0175] unit increase	NR [6912294] (imputed)	N
1073	chr7	64015378	64015379	rs7784802	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	417,580 European ancestry individuals	NA	7q11.21		rs7784802-A	0.639009	1E-11		0.014	[0.01-0.018] unit increase	NR [7250403] (imputed)	N
1073	chr7	64075942	64075943	rs985669	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	7q11.21	ZNF680	rs985669-?	NR	4E-6	(3-phosphoglyceric acid)	0.17235288	[0.099-0.246] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1074	chr7	64212517	64212518	rs61503757	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume x hypertension interaction (2df)	2,469 African American individuals	NA	7q11.21	ZNF107	rs61503757-T	0.1005	2E-8				Affymetrix, Illumina [9900000] (imputed)	N
1076	chr7	64358160	64358161	rs1830079	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x short total sleep time interaction (2df test)	2,990 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,300 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, at least 11,842 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,350 European ancestry controls, 4,047 Hispanic/Latino controls	at least 220 African American short sleepers, 326 East Asian ancestry short sleepers, up to 5,288 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 1,292 East Asian ancestry controls, up to 20,844 European ancestry controls, 10,062 Hispanic controls	7q11.21	ZNF273	rs1830079-?	NR	9E-14	(EA)	0.008525	[0.0011-0.0159] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1076	chr7	64358160	64358161	rs1830079	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x short total sleep time interaction (1df test)	2,990 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,300 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, at least 11,842 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,350 European ancestry controls, 4,047 Hispanic/Latino controls	at least 220 African American short sleepers, 326 East Asian ancestry short sleepers, up to 5,288 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 1,292 East Asian ancestry controls, up to 20,844 European ancestry controls, 10,062 Hispanic controls	7q11.21	ZNF273	rs1830079-?	NR	3E-12	(EA)	0.09423	[0.068-0.121] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1076	chr7	64375426	64375427	rs148807533	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7q11.21	NR	rs148807533-C	0.01045	3E-8	(DIABLO)	0.01252	NR unit increase	Illumina [1671387] (imputed)	N
1076	chr7	64407163	64407164	rs11773349	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	7q11.21	ZNF273	rs11773349-A	NR	6E-7	(between families)	4.991	unit decrease	Affymetrix [up to 15107142] (imputed)	N
1077	chr7	64522851	64522852	rs146201004	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7q11.21	NR	rs146201004-A	0.01045	3E-8	(DIABLO)	0.01252	NR unit increase	Illumina [1671387] (imputed)	N
1080	chr7	64882614	64882615	rs528027216	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	7q11.21	NR	rs528027216-?	NR	8E-6		0.419013	[0.24-0.6] unit increase	NR [13958389] (imputed)	N
1080	chr7	64982808	64982809	rs4416724	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	7q11.21		rs4416724-C	0.101251	2E-14		0.028235884	[0.021-0.035] unit increase	Affymetrix [93095623] (imputed)	N
1080	chr7	64982808	64982809	rs4416724	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	7q11.21		rs4416724-C	0.101283	3E-9		0.021947714	[0.015-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
1081	chr7	65065340	65065341	rs13235246	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	7q11.21	NR	rs13235246-A	0.101494	3E-18		0.027784	[0.022-0.034] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
1081	chr7	65090607	65090608	rs9638227	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Intraocular pressure and central corneal thickness (multi-trait analysis)	up to 31,269 European ancestry individuals	up to 7,792 Chinese ancestry individuals, 3,280 Malay ancestry individuals, 3,400 Indian ancestry individuals	7q11.21	LOC441242	rs9638227-C	0.4292	6E-11	(EA)			Affymetrix, Illumina [up to 12426120] (imputed)	N
1081	chr7	65090607	65090608	rs9638227	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Central corneal thickness	16,204 European ancestry individuals	NA	7q11.21	LOC441242	rs9638227-C	0.4292	2E-11		2.7242	NR ?m increase	Affymetrix, Illumina [9249813] (imputed)	N
1081	chr7	65116937	65116942	rs201697372	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	7q11.21	INTS4L2	rs201697372-G	0.474162	2E-15		0.01857185	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1081	chr7	65116937	65116942	rs201697372	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	7q11.21	INTS4L2	rs201697372-G	0.472	3E-10		0.02361754	[0.016-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1081	chr7	65116937	65116942	rs201697372	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	7q11.21	INTS4L2	rs201697372-G	0.4722	1E-9		0.02284061	[0.015-0.03] unit increase	Affymetrix [~ 2500000] (imputed)	N
1082	chr7	65184685	65184686	rs4473913	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	7q11.21		rs4473913-T	NR	4E-13		0.0148	[0.011-0.019] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
1082	chr7	65200392	65200393	rs10245642	32528159	Choquet H	2020-06-11	Commun Biol	A multiethnic genome-wide analysis of 44,039 individuals identifies 41 new loci associated with central corneal thickness.	Central corneal thickness	32,292 European ancestry individuals, 9,623 East Asian ancestry individuals, 1,367 Hispanic/Latino individuals, 757 African American  individuals	NA	7q11.21	LOC441242	rs10245642-?	NA	9E-9		1.57	[1.04-2.1] unit decrease	Affymetrix [5541230] (imputed)	N
1082	chr7	65203911	65203912	rs11334697	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	7q11.21		rs11334697-C	0.486635	9E-13		0.01683869	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1082	chr7	65212401	65212402	rs4718271	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	7q11.21	NR	rs4718271-C	0.4502	6E-38		0.002856	[0.0024-0.0033] unit increase	Affymetrix [NR] (imputed)	N
1082	chr7	65266380	65266381	rs7798271	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	7q11.21		rs7798271-A	NR	2E-8		0.0124	[0.0081-0.0167] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
1082	chr7	65271196	65271197	rs17711722	24068962	O'Seaghdha CM	2013-09-19	PLoS Genet	Meta-analysis of genome-wide association studies identifies six new Loci for serum calcium concentrations.	Calcium levels	39,400 European ancestry individuals	Up to 21,679 European ancestry individuals	7q11.21	VKORC1L1	rs17711722-T	0.47	8E-9		0.015	[0.0091-0.0209] unit increase	Affymetrix, Illumina [2500000] (imputed)	N
1083	chr7	65322387	65322389	rs10563220	30591961	Huang L	2018-12-24	Sci China Life Sci	Genome-wide analysis identified 17 new loci influencing intraocular pressure in Chinese population.	Intraocular pressure	5,571 Chinese ancestry individuals	2,981 Chinese ancestry individuals	7q11.21	LOC441242, VKORC1L1	rs10563220-AT	0.13	2E-9		6.03	NR z score increase	Illumina [at least 900015] (imputed)	N
1083	chr7	65326820	65326821	rs11763147	23291589	Lu Y	2013-01-06	Nat Genet	Genome-wide association analyses identify multiple loci associated with central corneal thickness and keratoconus.	Corneal structure	13,057 European ancestry individuals, 2,538 Indian ancestry individuals, 2,542 Malay ancestry individuals, 1,883 Chinese ancestry individuals	NA	7q11.21	VKORC1L1	rs11763147-A	0.45	4E-9		0.07	[0.05-0.09] unit increase	Affymetrix, Illumina [~ 1000000] (imputed)	N
1083	chr7	65331000	65331001	rs3112833	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	7q11.21		rs3112833-G	NR	8E-10		0.0114	[0.0079-0.0149] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
1083	chr7	65337901	65337902	rs55773927	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	7q11.21	VKORC1L1	rs55773927-T	0.41	3E-11		0.0019	[0.0013-0.0025] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
1083	chr7	65362682	65362683	rs67153520	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	7q11.21	VKORC1L1	rs67153520-C	0.223819	5E-14		0.025233356	[0.019-0.032] unit increase	Affymetrix [93095623] (imputed)	N
1084	chr7	65426989	65426990	rs11287621	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	7q11.21		rs11287621-C	NR	4E-35		0.0325	[0.027-0.038] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
1084	chr7	65438863	65438864	rs73148102	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	7q11.21		rs73148102-A	NR	2E-13		0.0148	[0.011-0.019] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1084	chr7	65438863	65438864	rs73148102	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	7q11.21		rs73148102-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1084	chr7	65438863	65438864	rs73148102	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7q11.21		rs73148102-?	NR	9E-23				NR [~ 8900000] (imputed)	N
1084	chr7	65441999	65442000	rs79017614	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Rubella	12,000 European ancestry cases, 71,597 European ancestry controls	NA	7q11.21	NR	rs79017614-?	NR	8E-6		5.68	[2.5-8.86] unit increase	Illumina [at least 560000] (imputed)	N
1084	chr7	65460162	65460163	rs1167398	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q11.21	NR	rs1167398-A	0.406285	3E-11				Affymetrix, Illumina [23467995] (imputed)	N
1084	chr7	65475733	65475734	rs35135885	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	7q11.21	GUSB	rs35135885-C	0.450324	3E-15		0.00178461	[0.0013-0.0022] unit decrease	Affymetrix [13995440] (imputed)	N
1084	chr7	65508544	65508545	rs427044	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q11.21	NR	rs427044-A	0.108547	1E-16				Affymetrix, Illumina [23114412] (imputed)	N
1084	chr7	65522782	65522783	rs6460270	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	7q11.21		rs6460270-G	NR	2E-8		0.0141	[0.0092-0.019] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1085	chr7	65552496	65552497	rs313829	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TPST1	5,357 Icelandic ancestry individuals	NA	7q11.21		rs313829-A	0.3206	1E-48		0.284798	[0.25-0.32] unit decrease	Illumina [7506463] (imputed)	N
1085	chr7	65552496	65552497	rs313829	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	7q11.21	TPST1	rs313829-G	0.67890625	1E-31	(TPST1, 7928_183_3)	0.30441007	[0.25-0.35] unit increase	Illumina [> 1000000] (imputed)	N
1085	chr7	65552496	65552497	rs313829	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	7q11.21	TPST1	rs313829-G	0.689	1E-18	(Protein-tyrosine sulfotransferase 1, TPST1.7928.183.3)	0.23	[0.17-0.29] unit increase	Affymetrix [10572788] (imputed)	N
1085	chr7	65599195	65599196	rs2243480	26305897	Iyengar SK	2015-08-25	PLoS Genet	Genome-Wide Association and Trans-ethnic Meta-Analysis for Advanced Diabetic Kidney Disease: Family Investigation of Nephropathy and Diabetes (FIND).	Diabetic kidney disease	up to 1,564 African American cases, 369  African American diabetic controls, 1,288 African American non-diabetic controls, 538 American Indian ancestry cases, 319 American Indian ancestry diabetic controls, 342 European ancestry cases, 404 European ancestry diabetic controls, 779 Mexican ancestry cases, 594 Mexican ancestry diabetic controls	NA	7q11.21	NR	rs2243480-?	NR	8E-6	(additive)	1.4084507	[1.2-1.64]	Affymetrix [NR]	N
1085	chr7	65609816	65609817	rs35072105	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	7q11.21	CRCP	rs35072105-A	0.5502	3E-10		0.0021	[0.0013-0.0029] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
1085	chr7	65617594	65617595	rs875971	21223598	Wineinger NE	2011-01-11	BMC Med Genomics	Genome-wide joint SNP and CNV analysis of aortic root diameter in African Americans: the HyperGEN study.	Aortic root size	1,086 African American individuals	NA	7q11.21	CRCP	rs875971-?	0.32	4E-6		0.1069	[0.063-0.151] cm increase	Affymetrix [NR]	N
1085	chr7	65662766	65662767	rs12540307	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	7q11.21		rs12540307-T	NR	5E-17		0.0265	[0.02-0.033] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1085	chr7	65662766	65662767	rs12540307	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	154,355 East Asian ancestry individuals	NA	7q11.21		rs12540307-T	0.260714	9E-9		0.0221752	[0.015-0.03] unit decrease	Illumina [13479091] (imputed)	N
1085	chr7	65662766	65662767	rs12540307	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	7q11.21		rs12540307-T	NR	3E-12		0.0266	[0.019-0.034] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
1085	chr7	65662766	65662767	rs12540307	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	7q11.21	NR	rs12540307-T	0.048188	2E-12		0.03638952	[0.026-0.046] unit decrease	Affymetrix [93095623] (imputed)	N
1085	chr7	65662766	65662767	rs12540307	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q11.21	NR	rs12540307-T	0.0935357	1E-20				Affymetrix, Illumina [24649327] (imputed)	N
1085	chr7	65662766	65662767	rs12540307	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	7q11.21	NR	rs12540307-T	0.048819	5E-18		0.038684	[0.03-0.047] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1085	chr7	65662766	65662767	rs12540307	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	7q11.21		rs12540307-?	NR	9E-16				NR [~ 8900000] (imputed)	N
1086	chr7	65709776	65709777	rs4149458	22179738	Lai HM	2011-12-16	Rheumatology (Oxford)	Gout and type 2 diabetes have a mutual inter-dependent effect on genetic risk factors and higher incidences.	Gout	20 Han Chinese ancestry male gout cases, 42 Han Chinese ancestry male controls	NA	7q11.21	TPST1	rs4149458-?		1E-7				Illumina [479403]	N
1086	chr7	65730797	65730798	rs1499614	22179738	Lai HM	2011-12-16	Rheumatology (Oxford)	Gout and type 2 diabetes have a mutual inter-dependent effect on genetic risk factors and higher incidences.	Gout	20 Han Chinese ancestry male gout cases, 42 Han Chinese ancestry male controls	NA	7q11.21	TPST1	rs1499614-?		1E-7				Illumina [479403]	N
1087	chr7	65822359	65822360	rs778732	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	7q11.21		rs778732-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1088	chr7	66009850	66009851	rs76949143	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	7q11.21	GS1-124K5.11	rs76949143-A	0.0507	1E-8		0.1432	[0.094-0.193] unit decrease	NR [7784415] (imputed)	N
1088	chr7	66030611	66030612	rs801193	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	7q11.21	GS1-124K5.11	rs801193-T	0.5758	4E-11		0.002	[0.0014-0.0026] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
1088	chr7	66030611	66030612	rs801193	21223598	Wineinger NE	2011-01-11	BMC Med Genomics	Genome-wide joint SNP and CNV analysis of aortic root diameter in African Americans: the HyperGEN study.	Aortic root size	1,086 African American individuals	NA	7q11.21	LOC401365, LOC493754	rs801193-?	0.34	4E-6		0.1113	[0.068-0.155] cm increase	Affymetrix [NR]	N
1088	chr7	66045511	66045512	rs6952407	25293881	Patel YM	2014-10-07	Cancer Epidemiol Biomarkers Prev	The contribution of common genetic variation to nicotine and cotinine glucuronidation in multiple ethnic/racial populations.	Cotinine glucuronidation	437 European ancestry current smoker individuals, 364 African American current smoker individuals, 453 Latino current smoker individuals, 674 Japanese ancestry current smoker individuals, 311 Native Hawaiian ancestry current smoker individuals	NA	7q11.21	LOC493754, KCTD7	rs6952407-A	NR	5E-9		0.033	[NR] unit increase	Illumina [11892802] (imputed)	N
1089	chr7	66060966	66060967	rs117379416	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (hospitalized covid vs population)	613 European ancestry cases, 680,416 European ancestry controls, 140 Hispanic or Latin American cases, 94,327 Hispanic or Latin American controls, 49 Black or African American cases, 22,410 Black or African American controls	NA	7q11.21		rs117379416-?	NR	5E-6		1.272035	[0.73-1.81] unit increase	Illumina [9875426] (imputed)	N
1089	chr7	66060966	66060967	rs117379416	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid respiratory support vs population)	495 European ancestry cases, 680,440 European ancestry controls, 102 Hispanic or Latin American cases, 94,330 Hispanic or Latin American controls, 39 Black or African American cases, 22,410 Black or African American controls	NA	7q11.21		rs117379416-?	NR	7E-7		1.4795605	[0.9-2.06] unit increase	Illumina [9842460] (imputed)	N
1089	chr7	66096027	66096028	rs10263935	21223598	Wineinger NE	2011-01-11	BMC Med Genomics	Genome-wide joint SNP and CNV analysis of aortic root diameter in African Americans: the HyperGEN study.	Aortic root size	1,086 African American individuals	NA	7q11.21	RABGEF1, KCTD7	rs10263935-?	0.32	4E-7		0.1142	[0.070-0.159] cm increase	Affymetrix [NR]	N
1089	chr7	66111456	66111457	rs10272546	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	7q11.21	KCTD7	rs10272546-A	0.539	1E-9		0.002	[0.0014-0.0026] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
1090	chr7	66300325	66300326	rs28441684	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Central corneal thickness	16,204 European ancestry individuals	NA	7q11.21	GTF2IRD1P1	rs28441684-G	0.262	3E-13		3.209	[2.34-4.07] ?m decrease	Affymetrix, Illumina [9249813] (imputed)	N
1091	chr7	66323499	66323500	rs2016325	26121980	Chauhan L	2015-06-30	BMC Genomics	Genome-wide association analysis identified splicing single nucleotide polymorphism in CFLAR predictive of triptolide chemo-sensitivity.	Triptolide cytotoxicity	55 European ancestry lymphoblastoid cell lines	NA	7q11.21	intergenic	rs2016325-?	NR	8E-6		0.56	unit increase	Affymetrix, Illumina, Perlegen [at least 1978803] (imputed)	N
1091	chr7	66344650	66344650	rs142658912	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (hospitalized covid vs population)	613 European ancestry cases, 680,416 European ancestry controls, 140 Hispanic or Latin American cases, 94,327 Hispanic or Latin American controls, 49 Black or African American cases, 22,410 Black or African American controls	NA	7q11.21		rs142658912-?	NR	9E-7		1.3005798	[0.78-1.82] unit increase	Illumina [9875426] (imputed)	N
1091	chr7	66344650	66344650	rs142658912	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid respiratory support vs population)	495 European ancestry cases, 680,440 European ancestry controls, 102 Hispanic or Latin American cases, 94,330 Hispanic or Latin American controls, 39 Black or African American cases, 22,410 Black or African American controls	NA	7q11.21		rs142658912-?	NR	3E-8		4.671	[2.711-8.048]	Illumina [9842460] (imputed)	N
1091	chr7	66344650	66344650	rs142658912	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid respiratory support vs population)	102 Hispanic or Latin American cases, 94,330 Hispanic or Latin American controls	NA	7q11.21		rs142658912-?	NR	1E-5		4.969	[2.772-8.908]	Illumina [19031602] (imputed)	N
1091	chr7	66412773	66412774	rs6971897	29760442	Iglesias AI	2018-05-14	Nat Commun	Cross-ancestry genome-wide association analysis of corneal thickness strengthens link between complex and Mendelian eye diseases.	Central corneal thickness	17,803 European ancestry individuals, 8,107 Asian ancestry individuals	NA	7q11.21	RABGEF1	rs6971897-A	0.3649	6E-8		2.3597	[1.51-3.21] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1091	chr7	66421445	66421446	rs4718428	23291589	Lu Y	2013-01-06	Nat Genet	Genome-wide association analyses identify multiple loci associated with central corneal thickness and keratoconus.	Corneal structure	13,057 European ancestry individuals, 2,538 Indian ancestry individuals, 2,542 Malay ancestry individuals, 1,883 Chinese ancestry individuals	NA	7q11.21	C7orf42	rs4718428-T	0.65	3E-10		0.05	[0.03-0.07] unit increase	Affymetrix, Illumina [~ 1000000] (imputed)	N
1093	chr7	66624611	66624612	rs28413067	29130521	Christopher L	2017-11-11	Ann Neurol	A variant in PPP4R3A protects against alzheimer-related metabolic decline.	Decline in glucose metabolism in posterior cingulate cortex	335 European ancestry MCI cases, 79 European ancestry AD cases, 192 European ancestry controls	NA	7q11.21	TYW1	rs28413067-?	NR	7E-6		2.65	[1.51-3.79] unit decrease	Illumina [2820932] (imputed)	N
1094	chr7	66768439	66768440	rs9647884	31586183	Niazi Y	2019-10-04	Mutagenesis	Distinct pathways associated with chromosomal aberration frequency in a cohort exposed to genotoxic compounds compared to general population.	Chromosomal aberration frequency (total)	866 European and unknown ancestry individuals	NA	7q11.21	PMS2P4, STAG3L4	rs9647884-?	NR	7E-6		0.1	[0.06-0.15] unit increase	Illumina [> 2600000] (imputed)	N
1094	chr7	66769772	66769773	rs13244247	31586183	Niazi Y	2019-10-04	Mutagenesis	Distinct pathways associated with chromosomal aberration frequency in a cohort exposed to genotoxic compounds compared to general population.	Chromosomal aberration frequency (chromosome type)	866 European and unknown ancestry individuals	NA	7q11.21	PMS2P4, STAG3L4	rs13244247-?	NR	4E-6		0.08	[0.05-0.12] unit increase	Illumina [> 2600000] (imputed)	N
1095	chr7	66865642	66865643	rs12698588	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota alpha diversity (Chao1 index)	1,068 Japanese ancestry individuals	NA	7q11.21	intergenic	rs12698588-T	0.38	3E-6	(male)	50.7	[29.73-71.67] unit decrease	Illumina [6380737] (imputed)	N
1095	chr7	66897804	66897805	rs186582231	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris color (b* coordinate)	329 South Asian ancestry individuals		7q11.21	intergenic	rs186582231-T	0.016	5E-6		1.653	[0.96-2.35] unit increase	Illumina [640625] (imputed)	N
1095	chr7	66897804	66897805	rs186582231	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris color (a* coordinate)	329 South Asian ancestry individuals		7q11.21	intergenic	rs186582231-T	0.0160256	3E-6		1.67994	[0.98-2.38] unit increase	Illumina [640625] (imputed)	N
1095	chr7	66903027	66903028	rs7804774	33128006	Timmins IR	2020-10-30	Commun Biol	Genome-wide association study of self-reported walking pace suggests beneficial effects of brisk walking on health and survival.	Walking pace	450,967 European ancestry individuals	NA	7q11.21	TYW1	rs7804774-A	NR	3E-8		0.00892127	[0.0058-0.0121] unit decrease	Affymetrix [10061374] (imputed)	N
1095	chr7	66904394	66904395	rs6948216	31295725	Wang ZT	2019-07-11	Aging (Albany NY)	Genome-wide association study identifies CD1A associated with rate of increase in plasma neurofilament light in non-demented elders.	Change in neurofilament light levels	545 European ancestry individuals	NA	7q11.21	LOC105375337, STAG3L4	rs6948216-?		3E-6				Illumina [1231747]	N
1095	chr7	66951982	66951983	rs117580153	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Vascular endothelial growth factor levels	7,118 Finnish ancestry individuals	NA	7q11.21	NR	rs117580153-C		6E-6		0.167	[0.094-0.24] SD units increase	NR [10700000] (imputed)	N
1096	chr7	66996900	66996901	rs112089026	31250787	Fawns-Ritchie C	2019-06-01	Twin Res Hum Genet	Genetic Contributions to Health Literacy.	Health literacy	1,771 English ancestry cases, 4,012 English ancestry controls	NA	7q11.22	RP4-736H5.1	rs112089026-C	NR	5E-7		0.0291	[0.018-0.04] unit increase	Illumina [NR] (imputed)	N
1096	chr7	67041512	67041513	rs10243436	34106200	Machipisa T	2021-06-09	JAMA Cardiol	Association of Novel Locus With Rheumatic Heart Disease in Black African Individuals: Findings From the RHDGen Study.	Rheumatic heart disease	1,687 Sub-Saharan African ancestry and African ancestry cases, 1,492 Sub-Saharan African ancestry and African ancestry controls, 601 European ancestry, South East Asian ancestry, South Asian ancestry, African ancestry and South African ancestry cases, 454 European ancestry, South East Asian ancestry, South Asian ancestry, African ancestry and South African ancestry controls	NA	7q11.22	LINC01372, LOC102723427	rs10243436-?	NR	4E-7		1.49	1.34-1.64	Illumina [7605010] (imputed)	N
1096	chr7	67059266	67059267	rs10263639	17903305	Murabito JM	2007-09-19	BMC Med Genet	A genome-wide association study of breast and prostate cancer in the NHLBI's Framingham Heart Study.	Breast cancer	58 cases, 665 controls	NA	7q11.22	intergenic	rs10263639-?	NR	3E-6				Affymetrix [70897]	N
1096	chr7	67086288	67086289	rs148788848	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	7q11.22	NR	rs148788848-?	NR	8E-10				Illumina [7760689] (imputed)	N
1096	chr7	67099219	67099220	rs6946516	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris heterochromicity	329 South Asian ancestry individuals		7q11.22	HAVCR2	rs6946516-T	0.349	4E-6		0.395	[0.23-0.56] unit increase	Illumina [640625] (imputed)	N
1097	chr7	67144566	67144567	rs189921337	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	7q11.22	PMS2P4	rs189921337-T	1.38700601397978E-5	9E-7		0.28936	[NR] unit increase	Affymetrix [> 30000000] (imputed)	N
1097	chr7	67164660	67164661	rs34501723	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7q11.22	NR	rs34501723-G	0.01568	8E-11	(SH3BGRL)	0.02063	NR unit increase	Illumina [1671387] (imputed)	N
1097	chr7	67164660	67164661	rs34501723	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7q11.22	NR	rs34501723-G	0.01568	4E-9	(PRELP)	0.1248	NR unit increase	Illumina [1671387] (imputed)	N
1097	chr7	67164660	67164661	rs34501723	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7q11.22	NR	rs34501723-G	0.01568	3E-8	(S100A6)	0.09757	NR unit increase	Illumina [1671387] (imputed)	N
1097	chr7	67188787	67188788	rs7807441	23599027	Demerath EW	2013-04-17	Hum Mol Genet	Genome-wide association study of age at menarche in African-American women.	Menarche (age at onset)	18,089 African American individuals	2,850 African American individuals, 87,802 European ancestry inidividuals	7q11.22	FLJ13195	rs7807441-T	0.55	3E-6	(AA)	4.02	[2.31-5.73] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1097	chr7	67192927	67192928	rs4634519	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-2 levels	3,475 Finnish ancestry individuals	NA	7q11.22	NR	rs4634519-G		3E-6		0.1261	[0.073-0.179] SD units increase	NR [10700000] (imputed)	N
1097	chr7	67195037	67195038	rs4566929	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	7q11.22		rs4566929-G	NR	4E-8		0.0097	[0.0062-0.0132] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1097	chr7	67198244	67198245	rs117225432	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	7q11.22	NR	rs117225432-T	NR	7E-6	(female)	0.1982	[0.11-0.28] unit decrease	Illumina [11133794] (imputed)	N
1097	chr7	67216369	67216370	rs6977845	29109912	Rawofi L	2017-11-02	PeerJ	Genome-wide association study of pigmentary traits (skin and iris color) in individuals of East Asian ancestry.	Iris color (a* coordinate)	377 East Asian ancestry individuals	NA	7q11.22	intergenic	rs6977845-A	0.0929826	2E-6		0.666	[0.39-0.94] unit increase	Illumina [at least 520076] (imputed)	N
1098	chr7	67292423	67292424	rs79798837	33893285	Guindo-Martinez M	2021-04-23	Nat Commun	The impact of non-additive genetic associations on age-related complex diseases.	Iron deficiency	2,439 European ancestry cases, 54,198 European ancestry controls	NA	7q11.22		rs79798837-T	0.1181476	2E-7		0.77		Affymetrix [15386714] (imputed)	N
1098	chr7	67360561	67360562	rs6969759	33824429	Fjukstad KK	2021-04-06	Pharmacogenomics J	Genetic variants associated with cardiometabolic abnormalities during treatment with selective serotonin reuptake inhibitors: a genome-wide association study.	LDL levels x SSRI defined daily dose interaction in schizophrenia or bipolar disorder	1,180 European ancestry individuals	NA	7q11.22	RP11-421N10.1	rs6969759-G	NR	8E-9		0.728548	[0.48-0.97] unit increase	Illumina [NR] (imputed)	N
1099	chr7	67408819	67408820	rs6946431	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	7q11.22	TYW1	rs6946431-?	NR	8E-6	(argininosuccinate)	0.28468686	[0.16-0.41] unit increase	Affymetrix [at least 2500000] (imputed)	N
1099	chr7	67426322	67426323	rs6961611	21130836	Luciano M	2010-12-03	Biol Psychol	Whole genome association scan for genetic polymorphisms influencing information processing speed.	Information processing speed	Up to 4,039 European ancestry individuals	NA	7q11.22	RP11-358M3.1	rs6961611-T	0.02	7E-6	(4-choice RT)	0.63	[0.36-0.90] unit decrease	Illumina [~ 610000]	N
1099	chr7	67470104	67470105	rs570477080	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris color (b* coordinate)	329 South Asian ancestry individuals		7q11.22	intergenic	rs570477080-C	0.161	6E-6		0.576	[0.33-0.82] unit decrease	Illumina [640625] (imputed)	N
1100	chr7	67543245	67543246	rs17635852	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	7q11.22	TYW1	rs17635852-?	NR	2E-6	(PC 38:5)	0.8108069	[0.48-1.14] unit increase	Affymetrix [at least 2500000] (imputed)	N
1100	chr7	67591038	67591039	rs77689838	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Parasitemia in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	7q11.22	NR	rs77689838-?	NR	6E-6				Affymetrix [5486770] (imputed)	N
1100	chr7	67595507	67595508	rs56373378	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume x hypertension interaction (2df)	2,469 African American individuals	NA	7q11.22	STAG3L4	rs56373378-T	0.9042	1E-11				Affymetrix, Illumina [9900000] (imputed)	N
1101	chr7	67690494	67690495	rs543942120	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	7q11.22		rs543942120-G	NR	1E-8		0.0104	[0.0069-0.0139] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1101	chr7	67705636	67705637	rs146070221	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		AC093655.1	rs146070221-?	NR	9E-12		4.42952	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1101	chr7	67715707	67715708	rs117375698	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	7q11.22	Intergenic	rs117375698-T	0.999	3E-7	(AA)	0.397	unit increase	Illumina [NR] (imputed)	N
1101	chr7	67762353	67762354	rs3108077	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7q11.22		rs3108077-?	NR	3E-10				NR [~ 8900000] (imputed)	N
1102	chr7	67799599	67799600	rs147549871	29520036	Stein MB	2018-03-08	Mol Psychiatry	Genome-wide analysis of insomnia disorder.	Insomnia	2,297 European American cases, 334 African American cases, 606 Latino American cases, 9,176 European American controls, 2,345 African American controls, 2,893 Latino American controls	NA	7q11.22	Intergenic	rs147549871-G	NR	5E-9	(EA)	1.8518518		Illumina [at least 360704] (imputed)	N
1103	chr7	67915284	67915285	rs60353720	29520036	Stein MB	2018-03-08	Mol Psychiatry	Genome-wide analysis of insomnia disorder.	Insomnia	2,297 European American cases, 334 African American cases, 606 Latino American cases, 9,176 European American controls, 2,345 African American controls, 2,893 Latino American controls	NA	7q11.22	Intergenic	rs60353720-A	NR	3E-6		1.1717		Illumina [at least 360704] (imputed)	N
1103	chr7	67968166	67968167	rs78400179	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	7q11.22	NR	rs78400179-G	0.0407	8E-9				NR [9056863] (imputed)	N
1103	chr7	68015041	68015042	rs79289854	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	7q11.22		rs79289854-T	0.04	2E-14		7.68	z score increase	Affymetrix [9061022] (imputed)	N
1103	chr7	68026082	68026083	rs13236930	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	QT interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	7q11.22	NR	rs13236930-?	NR	7E-6				Affymetrix [5486770] (imputed)	N
1104	chr7	68044018	68044019	rs118086804	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Vascular endothelial growth factor levels	7,118 Finnish ancestry individuals	NA	7q11.22	NR	rs118086804-C		9E-6		0.554	[0.3-0.81] SD units decrease	NR [10700000] (imputed)	N
1104	chr7	68044174	68044175	rs4718789	28447399	Jia P	2017-04-26	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of HIV-associated neurocognitive disorder (HAND): A CHARTER group study.	HIV-associated neurocognitive disorder (mild neurocognitive disorder)	30 African American cases, 45 European ancestry cases, 17 Hispanic cases, 297 African American controls, 230 European ancestry controls, 29 Hispanic controls, 11 controls	NA	7q11.22	intergenic	rs4718789-T		5E-7		4.443	[NR]	Affymetrix [NR]	N
1104	chr7	68050412	68050413	rs1403155	22610502	Kennedy RB	2012-05-19	Hum Genet	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IL-2)	Up to 512 European ancestry individuals, up to 199 African American individuals	NA	7q11.22	AUTS2	rs1403155-A		2E-8	(EA)			Illumina [NR]	N
1105	chr7	68175968	68175969	rs111952119	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interferon gamma-induced protein 10 levels	3,685 Finnish ancestry individuals	NA	7q11.22	NR	rs111952119-TA		8E-6		0.3154	[0.18-0.45] SD units increase	NR [10700000] (imputed)	N
1105	chr7	68231389	68231390	rs80073993	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Endometrial cancer	2,037 European ancestry cases, 410,350 European ancestry controls	NA	7q11.22		rs80073993-T	0.070109	3E-7		1.3331555	NR	Affymetrix [7846216] (imputed)	N
1105	chr7	68254623	68254624	rs1859577	34177598	Wolking S	2021-06-09	Front Pharmacol	Role of Common Genetic Variants for Drug-Resistance to Specific Anti-Seizure Medications.	Response to lamotrigine in focal epilepsy	334 European ancestry cases, 680 European ancestry controls	NA			rs1859577-?	NR	5E-7				Illumina [NR] (imputed)	N
1106	chr7	68326659	68326660	rs10237067	21685187	Siedlinski M	2011-06-16	Thorax	Genome-wide association study of smoking behaviours in patients with COPD.	Lifetime average cigarettes per day in chronic obstructive pulmonary disease	3,440 European ancestry cases	NA	7q11.22	intergenic	rs10237067-A	0.63	3E-6		0.072	unit increase	Illumina [~ 6300000] (imputed)	N
1106	chr7	68343783	68343784	rs10253399	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Bacterial meningitis	842 European ancestry cases, 82,778 European ancestry controls	NA	7q11.22	NR	rs10253399-?	NR	5E-6		0.2452	[0.14-0.35] unit increase	Illumina [at least 560000] (imputed)	N
1106	chr7	68402592	68402593	rs13225102	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	7q11.22		rs13225102-C	0.99997	6E-6		2.9891	[1.7-4.28] unit increase	Affymetrix [15580782] (imputed)	N
1106	chr7	68415037	68415038	rs113916643	31388106	Sofer T	2019-08-06	Sci Rep	Variants Associated with the Ankle Brachial Index Differ by Hispanic/Latino Ethnic Group: a genome-wide association study in the Hispanic Community Health Study/Study of Latinos.	Ankle-brachial index	1,500 Cuban ancestry individuals	NA	7q11.22	intergenic	rs113916643-GA	0.73	6E-8		0.024	[0.016-0.032] unit decrease	Illumina [27887661] (imputed)	N
1107	chr7	68515040	68515041	rs74467603	33491795	Timmer T	2021-01-25	Vox Sang	Genetic determinants of ferritin, haemoglobin levels and haemoglobin trajectories: results from Donor InSight.	Declining hemoglobin trajectory in blood donors	1,044 European ancestry cases, 783 European ancestry controls	NA	7q11.22	AUTS2, LOC100507468	rs74467603-T	0.057	8E-6		2.1	[1.51-2.90]	Affymetrix [7435577] (imputed)	N
1107	chr7	68540920	68540921	rs28435928	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Putamen volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	7q11.22	NR	rs28435928-?		2E-7				Illumina [4322238] (imputed)	N
1107	chr7	68548068	68548069	rs187494859	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage colony stimulating factor levels	840 Finnish ancestry individuals	NA	7q11.22	NR	rs187494859-C	NR	8E-6		0.6478	[0.36-0.93] SD units increase	NR [10700000] (imputed)	N
1108	chr7	68567585	68567586	rs6952233	28272467	Heilmann-Heimbach S	2017-03-08	Nat Commun	Meta-analysis identifies novel risk loci and yields systematic insights into the biology of male-pattern baldness.	Male-pattern baldness	10,846 European ancestry cases, 11,672 European ancestry controls	NA	7q11.22		rs6952233-G	0.46	1E-37		0.26	[0.22-0.3] unit decrease	Affymetrix, Illumina [8004650] (imputed)	N
1108	chr7	68587796	68587797	rs939963	29146897	Pirastu N	2017-11-17	Nat Commun	GWAS for male-pattern baldness identifies 71 susceptibility loci explaining 38% of the risk.	Male-pattern baldness	25,662 British ancestry cases, 17,928 British ancestry controls	13,367 European ancestry cases, 11,851 European ancestry controls, 3,436 cases, 2,435 controls	7q11.22	AUTS2	rs939963-G	NR	2E-41		0.188856	[0.16-0.22] unit decrease	Affymetrix [27512692] (imputed)	N
1108	chr7	68587796	68587797	rs939963	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		7q11.22	NR	rs939963-C	NR	4E-48		0.0900094	NR unit decrease	NR [NR] (imputed)	N
1108	chr7	68590956	68590957	rs6964487	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	7q11.22		rs6964487-?	NR	2E-132				NR [~ 8900000] (imputed)	N
1108	chr7	68590956	68590957	rs6964487	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	7q11.22	NR	rs6964487-G	0.457173	7E-44		0.0634941	[0.055-0.072] unit increase	NR [19129689] (imputed)	N
1108	chr7	68595226	68595227	rs34991987	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		7q11.22	NR	rs34991987-C	NR	4E-47		0.09	NR unit decrease	NR [NR] (imputed)	N
1108	chr7	68595226	68595227	rs34991987	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Male-pattern baldness	9,009 European ancestry cases, 8,491 European ancestry controls	NA	7q11.22	AUTS2	rs34991987-?	NR	2E-26		1.269	[1.214-1.326]	Illumina [13436641] (imputed)	N
1108	chr7	68597690	68597691	rs6969369	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	7q11.22	NR	rs6969369-C	0.405481	3E-17		0.0395326	[0.03-0.049] unit decrease	NR [19129689] (imputed)	N
1108	chr7	68609711	68609712	rs565177611	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	7q11.22	NR	rs565177611-?	NR	1E-6		0.0080231	[0.0048-0.0113] unit decrease	Affymetrix [805426] (imputed)	N
1108	chr7	68611959	68611960	rs6945541	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		7q11.22	NR	rs6945541-T	NR	1E-39		0.08	NR unit decrease	NR [NR] (imputed)	N
1108	chr7	68611959	68611960	rs6945541	22693459	Li R	2012-05-31	PLoS Genet	Six novel susceptibility Loci for early-onset androgenetic alopecia and their unexpected association with common diseases.	Male-pattern baldness	3,891 European ancestry cases, 8,915 European ancestry controls	NA	7q11.22	AUTS2	rs6945541-C	0.539	2E-9		1.27	[1.18-1.38]	Affymetrix, Illumina [2391230] (imputed)	N
1108	chr7	68618769	68618770	rs78702390	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	7q11.22		rs78702390-C	0.0583	2E-8		0.0167	[0.011-0.023] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1108	chr7	68618769	68618770	rs78702390	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	7q11.22	Intergenic	rs78702390-C	0.0583	9E-9	(MTAG)	0.0161	[0.011-0.022] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1108	chr7	68623891	68623892	rs12540951	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		7q11.22	NR	rs12540951-A	NR	4E-15		0.0647257	NR unit decrease	NR [NR] (imputed)	N
1108	chr7	68624341	68624342	rs1195218	25628336	Hromatka BS	2015-01-26	Hum Mol Genet	Genetic variants associated with motion sickness point to roles for inner ear development, neurological processes and glucose homeostasis.	Motion sickness	80,494 European ancestry individuals	NA	7q11.22	AUTS2	rs1195218-G	0.916	5E-22		0.095	[0.076-0.114] unit increase	Illumina [7428049] (imputed)	N
1109	chr7	68686126	68686127	rs7797307	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	7q11.22	NA	rs7797307-C	0.0598	7E-10		0.0245	[0.017-0.032] unit decrease	NR [~ 27400000] (imputed)	N
1109	chr7	68696332	68696333	rs11769000	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	7q11.22		rs11769000-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1109	chr7	68732516	68732517	rs1718768	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	7q11.22	WBSCR17	rs1718768-?	NR	8E-6	(TAG 56:9)	0.23466545	[0.13-0.34] unit increase	Affymetrix [at least 2500000] (imputed)	N
1109	chr7	68736092	68736093	rs1195215	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		7q11.22	NR	rs1195215-T	NR	1E-14		0.049285	NR unit increase	NR [NR] (imputed)	N
1109	chr7	68770963	68770964	rs147146213	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial lung adenocarcinoma	775 European ancestry cases, 31,563 European ancestry controls	NA	7q11.22	NR	rs147146213-A	0.006	5E-6		5.04	[2.52-10.07]	Illumina [8672852] (imputed)	N
1109	chr7	68798600	68798601	rs73700722	29213071	Mendez-Giraldez R	2017-12-06	Sci Rep	GWAS of the electrocardiographic QT interval in Hispanics/Latinos generalizes previously identified loci and identifies population-specific signals.	QT interval	15,997 Hispanic/Latino individuals	NA	7q11.22	AUTS2	rs73700722-A	0.99	1E-7		7.08	[4.43-9.73] ms decrease	Affymetrix, Illumina [up to 17586686] (imputed)	N
1110	chr7	68824094	68824095	rs2271032	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	7q11.22	NR	rs2271032-G	0.1372	8E-6	(EA)	0.0407	[0.023-0.059] unit increase	Illumina [~ 11800000] (imputed)	N
1110	chr7	68887850	68887851	rs10225320	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	7q11.22	NR	rs10225320-C	0.252485	2E-10		0.046145003	[0.032-0.06] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1110	chr7	68887850	68887851	rs10225320	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	7q11.22	Intergenic	rs10225320-T	0.26	1E-10		0.021	[0.015-0.027] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
1110	chr7	68890055	68890056	rs9791848	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	7q11.22	Intergenic	rs9791848-A	0.2754	5E-10	(MTAG)	0.016	[0.011-0.021] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1110	chr7	68895338	68895339	rs11771719	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	7q11.22	NR	rs11771719-?	NR	2E-6		4.747	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1110	chr7	68895392	68895393	rs11760432	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	7q11.22	NR	rs11760432-?	NR	4E-7		0.046	[0.028-0.064] unit decrease	Illumina [at least 560000] (imputed)	N
1110	chr7	68898688	68898689	rs4718886	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	7q11.22		rs4718886-?	NR	2E-83				NR [~ 8900000] (imputed)	N
1110	chr7	68898688	68898689	rs4718886	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	7q11.22	NR	rs4718886-G	0.253508	7E-115		0.0806452	[0.074-0.088] unit decrease	NR [19129689] (imputed)	N
1110	chr7	68898688	68898689	rs4718886	29146897	Pirastu N	2017-11-17	Nat Commun	GWAS for male-pattern baldness identifies 71 susceptibility loci explaining 38% of the risk.	Male-pattern baldness	25,662 British ancestry cases, 17,928 British ancestry controls	13,367 European ancestry cases, 11,851 European ancestry controls, 3,436 cases, 2,435 controls	7q11.22	AUTS2	rs4718886-A	NR	8E-27		0.173721	[0.14-0.21] unit decrease	Affymetrix [27512692] (imputed)	N
1110	chr7	68898688	68898689	rs4718886	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		7q11.22	NR	rs4718886-G	NR	1E-24		0.0729562	NR unit decrease	NR [NR] (imputed)	N
1110	chr7	68905737	68905738	rs6959964	26256467	Wojczynski MK	2015-07-03	Metabolism	Genome-wide association study of triglyceride response to a high-fat meal among participants of the NHLBI Genetics of Lipid Lowering Drugs and Diet Network (GOLDN).	Postprandial triglyceride response to high fat diet meal	872 European ancestry individuals	843 Old Order Amish individuals	7q11.22	intergenic	rs6959964-C	0.369	3E-7	(AUC, adjusted for baseline TG level)	0.2574	[0.16-0.36] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1110	chr7	68908284	68908285	rs6943067	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		7q11.22	AUTS2	rs6943067-A	NR	4E-12		0.0449525	NR unit decrease	NR [NR] (imputed)	N
1110	chr7	68913085	68913086	rs16869103	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter alcoholic beverage consumption	336,448 European ancestry individuals	39,924 European ancestry individuals	7q11.22	LOC100507468	rs16869103-G	0.8065	3E-7		0.0066	[0.0041-0.0091] unit increase	Affymetrix [~ 7740000] (imputed)	N
1111	chr7	68945416	68945417	rs55788337	31993563	Ware EB	2019-11-22	Mayo Clin Proc Innov Qual Outcomes	Genome-wide Association Study of 24-Hour Urinary Excretion of Calcium, Magnesium, and Uric Acid.	Urinary uric acid excretion	6,462 European ancestry individuals	NA	7q11.22	intergenic	rs55788337-T	0.67	9E-6		10.77	NR unit increase	NR [NR] (imputed)	N
1111	chr7	68945646	68945647	rs56919232	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	7q11.22		rs56919232-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1111	chr7	69042723	69042724	rs2865116	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	7q11.22	NR	rs2865116-A	0.669222791681517	5E-10		0.013901871	[0.0095-0.0183] unit decrease	NR [NR]	N
1111	chr7	69042723	69042724	rs2865116	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Positive affect	180,281 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	7q11.22	NR	rs2865116-A	0.6629	2E-6		0.017	[0.01-0.024] unit increase	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
1111	chr7	69064636	69064637	rs3735260	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	7q11.22		rs3735260-G	NR	4E-9		0.0585	[0.039-0.078] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1111	chr7	69074767	69074768	rs2851485	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	7q11.22		rs2851485-C	NR	2E-9		0.0135	[0.0092-0.0178] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
1111	chr7	69074767	69074768	rs2851485	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	7q11.22		rs2851485-C	NR	5E-10		0.0139	[0.0096-0.0182] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
1112	chr7	69147702	69147703	rs2533449	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	7q11.22	NR	rs2533449-?	NR	8E-9		0.0545	[0.036-0.073] unit decrease	Illumina [at least 560000] (imputed)	N
1112	chr7	69150848	69150849	rs2851487	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	7q11.22		rs2851487-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1112	chr7	69175652	69175653	rs513150	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	7q11.22	AUTS2	rs513150-A	0.6526	2E-17		0.017336262	[0.013-0.021] unit increase	Illumina [9339358] (imputed)	N
1112	chr7	69189725	69189726	rs610930	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	7q11.22	AUTS2	rs610930-A	0.287	1E-19		1.07	[1.05-1.08]	Affymetrix, Illumina [11800000] (imputed)	N
1112	chr7	69205759	69205760	rs4717520	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	7q11.22	AUTS2	rs4717520-A	0.65	2E-14		0.0095	[0.0071-0.0119] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
1113	chr7	69218336	69218337	rs6460528	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	7q11.22		rs6460528-C	NR	3E-9		0.0122	[0.0083-0.0161] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
1113	chr7	69218336	69218337	rs6460528	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	7q11.22	AUTS2	rs6460528-C	0.544293	7E-11		0.014405815	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
1113	chr7	69218336	69218337	rs6460528	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	7q11.22	AUTS2	rs6460528-C	0.544368	1E-10		0.014193236	[0.0099-0.0185] unit increase	Affymetrix [93095623] (imputed)	N
1113	chr7	69218336	69218337	rs6460528	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	7q11.22	NR	rs6460528-T	0.454495	4E-8		0.0152877	[0.0098-0.0208] unit increase	Affymetrix [16580851] (imputed)	N
1113	chr7	69218336	69218337	rs6460528	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	7q11.22		rs6460528-?	NR	9E-10				NR [~ 8900000] (imputed)	N
1113	chr7	69218336	69218337	rs6460528	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	7q11.22		rs6460528-?	NR	5E-13				NR [~ 8900000] (imputed)	N
1113	chr7	69238157	69238158	rs11765886	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	7q11.22	NR	rs11765886-C	0.665165836680053	4E-6	(IGP39)	0.1625	[0.094-0.231] unit increase	Illumina [~ 2500000] (imputed)	N
1113	chr7	69238157	69238158	rs11765886	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	7q11.22	NR	rs11765886-C	0.66506290565198	5E-6	(IGP40)	0.1591	[0.091-0.228] unit increase	Illumina [~ 2500000] (imputed)	N
1113	chr7	69238492	69238493	rs115131074	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	7q11.22	AUTS2	rs115131074-A	0.0481	9E-10		0.004	[0.0026-0.0054] unit decrease	Affymetrix [15275733] (imputed)	N
1113	chr7	69244311	69244312	rs210593	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	7q11.22		rs210593-A	0.655	3E-9		0.007	[0.005-0.009] unit increase	NR [NR] (imputed)	N
1113	chr7	69264272	69264273	rs34701787	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	7q11.22	NR	rs34701787-C	0.110338	8E-11		0.065133065	[0.045-0.085] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1113	chr7	69268011	69268012	rs35213789	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	7q11.22	AUTS2	rs35213789-C	0.74	4E-9		1.06	[1.05-1.07]	Illumina [at least 560000] (imputed)	N
1113	chr7	69268011	69268012	rs35213789	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	7q11.22	AUTS2	rs35213789-?	NR	4E-9		1.0604454	[1.04-1.08]	Illumina [13754664] (imputed)	N
1113	chr7	69270648	69270649	rs11763186	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	7q11.22	NR	rs11763186-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
1113	chr7	69318194	69318195	rs2865805	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	7q11.22		rs2865805-C	0.27	7E-13		7.18	z score increase	Affymetrix [9061022] (imputed)	N
1113	chr7	69318194	69318195	rs2865805	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	7q11.22		rs2865805-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1113	chr7	69325930	69325931	rs17140980	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	7q11.22	NR	rs17140980-G	0.3098	6E-11				NR [9056863] (imputed)	N
1114	chr7	69348126	69348127	rs12698811	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	7q11.22	NR	rs12698811-?	NR	8E-6		4.467	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1114	chr7	69375455	69375456	rs10252876	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	7q11.22		rs10252876-?	NR	2E-7				NR [~ 8900000] (imputed)	N
1114	chr7	69376722	69376723	rs13224557	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7q11.22		rs13224557-?	NR	1E-14				NR [~ 8900000] (imputed)	N
1114	chr7	69396869	69396870	rs7809934	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	7q11.22	NR	rs7809934-C	0.308543015657721	4E-9		0.013494528	[0.009-0.018] unit increase	NR [NR]	N
1114	chr7	69406660	69406661	rs6947395	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	46,511 Asian ancestry cases, 169,776 Asian ancestry controls	NA	7q11.22	NR	rs6947395-T	0.1981	3E-16		0.0898	[0.068-0.111] unit increase	Affymetrix, Illumina [1077427] (imputed)	N
1114	chr7	69406660	69406661	rs6947395	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	7q11.22	AUTS2	rs6947395-T	0.2	5E-16		1.09	1.07-1.12	Illumina [12557761] (imputed)	N
1114	chr7	69406660	69406661	rs6947395	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	7q11.22	AUTS2	rs6947395-T	0.198	5E-12	(Japanese)	0.029	[0.021-0.037] unit increase	Illumina [6108953] (imputed)	N
1114	chr7	69409377	69409378	rs7785360	26348319	Myung W	2015-09-08	Transl Psychiatry	A genome-wide association study of antidepressant response in Koreans.	Response to serotonin reuptake inhibitors in non-psychotic unipolar depression	263 Korean ancestry responder cases, 218 Korean ancestry non-responder cases	118 Korean ancestry responder cases, 112 Korean ancestry non-responder cases	7q11.22	AUTS2	rs7785360-?	NR	2E-8				Affymetrix [505435] (imputed)	N
1114	chr7	69415278	69415279	rs12698820	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	7q11.22	NR	rs12698820-?	NR	2E-8		0.0563	[0.037-0.076] unit decrease	Illumina [at least 560000] (imputed)	N
1114	chr7	69425892	69425893	rs12698826	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	7q11.22	NR	rs12698826-G	NR	4E-9		0.0159	[0.011-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
1114	chr7	69432310	69432311	rs79631993	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	7q11.22	NR	rs79631993-C	0.216281	4E-8	(Conditioned on chr7:69484366)	0.017034348	[0.011-0.023] unit decrease	NR [~ 10000000] (imputed)	N
1114	chr7	69445340	69445341	rs11981973	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	163,835 East Asian ancestry individuals	NA	7q11.22		rs11981973-G	0.197955	6E-14		0.0299262	[0.022-0.038] unit increase	Illumina [13479178] (imputed)	N
1114	chr7	69445525	69445526	rs13238398	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	7q11.22		rs13238398-G	0.14	8E-19		8.86	z score increase	Affymetrix [9061022] (imputed)	N
1114	chr7	69453713	69453714	rs10452738	33128006	Timmins IR	2020-10-30	Commun Biol	Genome-wide association study of self-reported walking pace suggests beneficial effects of brisk walking on health and survival.	Walking pace	450,967 European ancestry individuals	NA	7q11.22	AUTS2	rs10452738-A	NR	3E-10		0.00849416	[0.0059-0.0111] unit increase	Affymetrix [10061374] (imputed)	N
1115	chr7	69484365	69484366	rs7809303	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	7q11.22	NR	rs7809303-A	0.325	1E-20		0.0106713	[0.0084-0.0129] unit decrease	NR [9732723] (imputed)	N
1115	chr7	69484365	69484366	rs7809303	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	7q11.22	NR	rs7809303-A	0.325	3E-15		0.021418838	[0.016-0.027] unit decrease	NR [~ 10000000] (imputed)	N
1115	chr7	69484365	69484366	rs7809303	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	7q11.22	NR	rs7809303-A	0.326	6E-9		0.00903661	[0.006-0.0121] unit increase	NR [9732723] (imputed)	N
1115	chr7	69499943	69499944	rs13229395	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Problematic alcohol use (MTAG)	972,915 European ancestry individuals	NA	7q11.22	NR	rs13229395-C	0.2568	1E-8		0.013321201	[0.0087-0.0179] unit decrease	Affymetrix [10613246] (imputed)	N
1115	chr7	69567316	69567317	rs1476104	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	7q11.22	NR	rs1476104-?	NR	7E-8		0.0538	[0.034-0.073] unit increase	Illumina [at least 560000] (imputed)	N
1115	chr7	69579023	69579024	rs2058382	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking cessation (MTAG)	up to 820,192 European ancestry individuals	NA	7q11.22	NR	rs2058382-G	0.401	4E-8		0.00863707	[0.0056-0.0117] unit increase	NR [9732723] (imputed)	N
1115	chr7	69579023	69579024	rs2058382	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Subjective well-being	298,420 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	7q11.22	NR	rs2058382-A	0.5988	8E-6		0.0119	[0.0066-0.0172] unit decrease	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
1115	chr7	69598327	69598328	rs1035010	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	7q11.22		rs1035010-T	NR	3E-15		0.0169	[0.013-0.021] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1115	chr7	69598327	69598328	rs1035010	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	7q11.22	NA	rs1035010-T	0.2517	2E-12		0.0139	[0.01-0.0178] unit increase	NR [~ 27400000] (imputed)	N
1116	chr7	69607508	69607509	rs117463770	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	7q11.22	NR	rs117463770-C	0.0228628	4E-11		0.13871688	[0.098-0.18] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1116	chr7	69607508	69607509	rs117463770	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	7q11.22	Intergenic	rs117463770-C	0.9781	1E-11	(MTAG)	0.0532	[0.038-0.068] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1116	chr7	69607508	69607509	rs117463770	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	7q11.22	Intergenic	rs117463770-C	0.9781	3E-11		0.0648	[0.046-0.084] unit increase	Affymetrix, Illumina [10100000] (imputed)	N
1116	chr7	69607508	69607509	rs117463770	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		7q11.22	AUTS2	rs117463770-G	NR	5E-8		0.125367	NR unit decrease	NR [NR] (imputed)	N
1116	chr7	69627758	69627759	rs13230441	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	7q11.22	NR	rs13230441-?	NR	7E-6		4.501	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1116	chr7	69636025	69636026	rs139893098	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	7q11.22		rs139893098-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1116	chr7	69648161	69648162	rs6950647	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	7q11.22	NA	rs6950647-G		2E-14		0.0158146	[0.012-0.02] unit decrease	Illumina [13288253] (imputed)	N
1116	chr7	69649682	69649683	rs6975279	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	7q11.22	NR	rs6975279-C	0.7117	4E-25		0.0431	[0.035-0.051] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1116	chr7	69657329	69657330	rs73171706	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	7q11.22	Intergenic	rs73171706-T	0.0428	4E-9	(MTAG)	0.0194	[0.013-0.026] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1116	chr7	69662258	69662260	rs10618080	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	7q11.22		rs10618080-C	0.301264798	9E-18		1.0840224	[1.064246742-1.10416545]	Illumina [8919992] (imputed)	N
1116	chr7	69696742	69696746	rs145126703	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		7q11.22	AUTS2	rs145126703-T	NR	5E-11		0.0488274	NR unit increase	NR [NR] (imputed)	N
1116	chr7	69696904	69696905	rs12698877	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	7q11.22	AUTS2	rs12698877-G	0.336	7E-22		1.07	[1.06-1.08]	Affymetrix, Illumina [11800000] (imputed)	N
1116	chr7	69707622	69707623	rs1474368	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		7q11.22	AUTS2	rs1474368-G	NR	5E-8		0.0376489	NR unit decrease	NR [NR] (imputed)	N
1116	chr7	69713465	69713466	rs2030705	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	7q11.22	NR	rs2030705-A	NR	3E-8		5.517	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1116	chr7	69727427	69727428	rs10258962	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	7q11.22		rs10258962-A	0.274150147	6E-14		0.076599516	[0.057-0.097] unit increase	Illumina [13429769] (imputed)	N
1116	chr7	69727427	69727428	rs10258962	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	7q11.22		rs10258962-A	0.277574973	1E-9		0.066595815	[0.045-0.088] unit increase	Illumina [13134967] (imputed)	N
1117	chr7	69735250	69735251	rs12112638	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	7q11.22	NR	rs12112638-A	0.233598	3E-11		0.049299136	[0.035-0.064] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1117	chr7	69735250	69735251	rs12112638	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	7q11.22	Intergenic	rs12112638-A	0.7366	2E-11		0.0216	[0.015-0.028] unit increase	Affymetrix, Illumina [10100000] (imputed)	N
1117	chr7	69755740	69755741	rs2280613	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	7q11.22		rs2280613-A	NR	7E-10		0.0521	[0.036-0.069] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1117	chr7	69765504	69765505	rs12698891	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	7q11.22	NR	rs12698891-A	NR	1E-9		6.077	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1117	chr7	69767398	69767399	rs59382904	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	7q11.22		rs59382904-A	NR	1E-13		0.0165	[0.012-0.021] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1117	chr7	69768706	69768707	rs7787612	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking initiation	842,717 European ancestry individuals	NA	7q11.22	AUTS2	rs7787612-T		7E-9		0.977	[NR]	Affymetrix [up to 79000000] (imputed)	N
1117	chr7	69768825	69768826	rs1949804	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	7q11.22	AUTS2	rs1949804-G	0.04	4E-12		0.029	[0.021-0.037] unit increase	Illumina [6108953] (imputed)	N
1117	chr7	69769368	69769369	rs2222544	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	7q11.22	AUTS2	rs2222544-T	0.7368	9E-9		0.0987	[0.065-0.132] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1117	chr7	69775269	69775270	rs6460542	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	7q11.22		rs6460542-T	NR	2E-11		0.0142	[0.01-0.018] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1117	chr7	69775269	69775270	rs6460542	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	7q11.22		rs6460542-T	NR	1E-13		0.016	[0.012-0.02] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
1117	chr7	69782072	69782073	rs2103132	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	7q11.22	NR	rs2103132-G	0.749	2E-9		0.0319	[0.022-0.042] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
1117	chr7	69783012	69783013	rs12698897	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	7q11.22		rs12698897-A	NR	1E-16		0.0586	[0.045-0.073] unit increase	Affymetrix, Illumina [25845091] (imputed)	N
1117	chr7	69783012	69783013	rs12698897	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	7q11.22		rs12698897-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1117	chr7	69783019	69783020	rs10085696	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol consumption (drinks per week) (MTAG)	972,915 European ancestry individuals	NA	7q11.22	NR	rs10085696-G	0.201	5E-11		0.014756182	[0.01-0.019] unit decrease	Affymetrix [NR] (imputed)	N
1117	chr7	69783019	69783020	rs10085696	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	7q11.22	NR	rs10085696-G	0.186	1E-11		0.0114574	[0.0081-0.0148] unit decrease	NR [~ 9732723] (imputed)	N
1117	chr7	69783019	69783020	rs10085696	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week)	up to 941,280 European ancestry individuals	NA	7q11.22	NR	rs10085696-G	0.186	1E-9		0.011408902	[0.0077-0.0151] unit decrease	NR [~ 10000000] (imputed)	N
1117	chr7	69789373	69789374	rs6953344	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	7q11.22		rs6953344-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1117	chr7	69789566	69789567	rs6957740	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	7q11.22	NR	rs6957740-?	NR	2E-11				Affymetrix [~ 8270000] (imputed)	N
1117	chr7	69793379	69793380	rs6978841	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Alcohol consumption (drinks per week)	up to 357,854 European ancestry individuals	NA	7q11.22	AUTS2	rs6978841-A	0.184	2E-8		0.0183	[0.012-0.025] unit decrease	Illumina [~ 250000] (imputed)	N
1117	chr7	69806022	69806023	rs6943555	31358974	Evangelou E	2019-07-29	Nat Hum Behav	New alcohol-related genes suggest shared genetic mechanisms with neuropsychiatric disorders.	Alcohol consumption	480,842 European ancestry individuals	NA	7q11.22	AUTS2	rs6943555-A	0.24	3E-6		0.0056	[0.0032-0.008] unit decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1117	chr7	69806022	69806023	rs6943555	21471458	Schumann G	2011-04-06	Proc Natl Acad Sci U S A	Genome-wide association and genetic functional studies identify autism susceptibility candidate 2 gene (AUTS2) in the regulation of alcohol consumption.	Alcohol consumption	26,316 European ancestry individuals	21,185 European ancestry individuals	7q11.22	AUTS2	rs6943555-A	0.24	4E-8	(quantile transformation)	0.013	[-0.003-0.028] unit decrease	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1117	chr7	69808152	69808153	rs1524518	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	7q11.22		rs1524518-A	NR	2E-13		0.0172	[0.013-0.022] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
1117	chr7	69832141	69832142	rs117928826	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	7q11.22	WBSCR17	rs117928826-T	0.9636	1E-12		0.036961664	[0.027-0.047] unit increase	Illumina [9339358] (imputed)	N
1118	chr7	69862422	69862423	rs2158507	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	7q11.22	Intergenic	rs2158507-A	0.388	3E-8	(MTAG)	0.0074	[0.0049-0.0099] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1118	chr7	69862422	69862423	rs2158507	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	7q11.22	Intergenic	rs2158507-A	0.3887	2E-10	(MTAG)	0.015	[0.01-0.02] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1118	chr7	69868488	69868489	rs10279237	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	7q11.22	NR	rs10279237-?	NR	3E-7		0.009048	[0.0056-0.0125] unit increase	Affymetrix [805426] (imputed)	N
1118	chr7	69868488	69868489	rs10279237	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	7q11.22	AUTS2	rs10279237-T	0.8003	7E-9		0.002	[0.0012-0.0028] unit increase	Affymetrix [15275733] (imputed)	N
1118	chr7	69869512	69869513	rs13230845	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals, 6,795 African American individuals, 6,324 East Asian ancestry individuals, 2,335 South Asian ancestry individuals, 1,442 Hispanic individuals	NA	7q11.22	AUTS2	rs13230845-C	NR	5E-10		0.0156	[0.011-0.02] unit decrease	Affymetrix, Illumina [8034757] (imputed)	N
1118	chr7	69887084	69887085	rs11766624	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	7q11.22	AUTS2	rs11766624-G	0.153	4E-7	(Arm span )	0.04	[NR] cm increase	Illumina [899892]	N
1118	chr7	69901705	69901706	rs17141606	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	7q11.22		rs17141606-G	0.193262	6E-9		0.0199414	[0.013-0.027] unit increase	Illumina [13479924] (imputed)	N
1118	chr7	69902151	69902152	rs2006810	35043453	Qi G	2022-01-18	Genet Epidemiol	Genome-wide association studies of 27 accelerometry-derived physical activity measurements identified novel loci and genetic mechanisms.	Physical activity (Total log acceleration 8pm-10pm)	88,411 European ancestry individuals	NA	7q11.22		rs2006810-C	0.395	8E-11		0.031	unit decrease	Affymetrix [8951705] (imputed)	N
1118	chr7	69902151	69902152	rs2006810	30531941	Doherty A	2018-12-10	Nat Commun	GWAS identifies 14 loci for device-measured physical activity and sleep duration.	Sleep duration	91,105 European ancestry individuals	NA	7q11.22	AUTS2	rs2006810-T	0.604	4E-9		0.028	[0.018-0.038] SD units decrease	NR [9926106] (imputed)	N
1118	chr7	69902653	69902654	rs35692677	31630189	Casanova F	2019-10-20	Hum Mol Genet	A genome-wide association study implicates multiple mechanisms influencing raised urinary albumin-creatinine ratio.	Urinary albumin-to-creatinine ratio	437,027 European ancestry individuals	60,130 individuals	7q11.22	AUTS2	rs35692677-G	0.813	1E-8	(EA)	0.015	[0.0091-0.0209] unit increase	NR [12082474] (imputed)	N
1118	chr7	69902653	69902654	rs35692677	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals	NA	7q11.22	AUTS2	rs35692677-A	0.1863	3E-10		0.016352	[0.011-0.021] unit decrease	Affymetrix, Illumina [8603712] (imputed)	N
1118	chr7	69907024	69907025	rs7802500	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	7q11.22	AUTS2	rs7802500-?		2E-9				Affymetrix, Illumina [NR] (imputed)	N
1118	chr7	69913389	69913390	rs6460547	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in diabetes mellitus	153 Korean ancestry cases, 5,161 Korean ancestry controls	NA	7q11.22		rs6460547-C	0.1372	7E-6		1.87	[1.424-2.455]	Affymetrix [7975321] (imputed)	N
1118	chr7	69914689	69914690	rs915103621	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Malignant lymphoma	335 East Asian ancestry cases, 177,342 East Asian ancestry controls	NA	7q11.22		rs915103621-G	0.001049949	5E-8		14.361055	[9.21-19.51] unit increase	Illumina [13429812] (imputed)	N
1118	chr7	69914689	69914690	rs915103621	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Malignant lymphoma	3,546 European ancestry cases, 487,257 European ancestry controls, 335 East Asian ancestry cases, 177,342 East Asian ancestry controls	NA	7q11.22		rs915103621-G	NR	5E-8		14.3611	[9.21-19.51] unit increase	Affymetrix, Illumina [25845276] (imputed)	N
1118	chr7	69928799	69928800	rs145530569	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-8 levels	3,526 Finnish ancestry individuals	NA	7q11.22	NR	rs145530569-G		5E-6		0.6872	[0.39-0.98] SD units decrease	NR [10700000] (imputed)	N
1118	chr7	69936476	69936477	rs4236237	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	7q11.22	AUTS2	rs4236237-C	0.40080000000000005	1E-10		1.0244951		Affymetrix [11880941] (imputed)	N
1118	chr7	69937949	69937950	rs3094901	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Monobrow	69,284 European ancestry individuals	NA	7q11.22	AUTS2	rs3094901-?	NR	2E-9		0.022	[0.029-0.015] unit decrease	Illumina [12039491] (imputed)	N
1118	chr7	69948240	69948241	rs13223152	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	7q11.22	NR	rs13223152-A	NR	2E-10		6.338	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1118	chr7	69948240	69948241	rs13223152	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Irritable mood	366,726 European ancestry individuals	NA	7q11.22	AUTS2	rs13223152-A	0.401671	1E-9		6.09	z score increase	NR [~ 10847151] (imputed)	N
1118	chr7	69952186	69952187	rs11767893	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	7q11.22	NR	rs11767893-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
1118	chr7	69952186	69952187	rs11767893	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	7q11.22		rs11767893-?	NR	4E-13				NR [~ 8900000] (imputed)	N
1118	chr7	69953754	69953755	rs117675278	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	7q11.22	AUTS2	rs117675278-T	NR	3E-6		0.0507368	[0.03-0.072] unit decrease	Illumina [13520550] (imputed)	N
1118	chr7	69957024	69957025	rs3113281	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	7q11.22	NR	rs3113281-A	NR	4E-9		5.901	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1118	chr7	69971019	69971020	rs3094893	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	7q11.22	NR	rs3094893-T	NR	2E-8		5.594	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1118	chr7	69976236	69976237	rs11972637	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	7q11.22	NR	rs11972637-A	NR	6E-9		5.807	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1118	chr7	69987532	69987533	rs13247777	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	7q11.22	Intergenic	rs13247777-T	0.9298	6E-11	(MTAG)	0.0293	[0.02-0.038] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1119	chr7	69993341	69993342	rs3113262	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	7q11.22	NR	rs3113262-G	0.483101	9E-12		0.042933207	[0.031-0.055] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1119	chr7	69993341	69993342	rs3113262	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	7q11.22	Intergenic	rs3113262-C	0.5019	6E-12		0.0196	[0.014-0.025] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
1119	chr7	69993341	69993342	rs3113262	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	7q11.22	AUTS2	rs3113262-C	NR	8E-9		5.767	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1119	chr7	69996370	69996371	rs2007481	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	7q11.22	AUTS2	rs2007481-A	NR	2E-9		6.018	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1119	chr7	70012518	70012519	rs10234796	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Photic sneeze reflex	32,446 European ancestry cases, 67,249 European ancestry controls	NA	7q11.22	AUTS2	rs10234796-?	NR	1E-8		1.0626993	[1.04-1.09]	Illumina [13729857] (imputed)	N
1119	chr7	70025112	70025113	rs55772938	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (computer use)	408,815 European ancestry individuals	NA	7q11.22	NR	rs55772938-?		4E-10		0.0151223	[0.01-0.02] unit decrease	Affymetrix [19400418] (imputed)	N
1119	chr7	70038968	70038969	rs4718964	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	7q11.22		rs4718964-T	NR	2E-16		0.0142	[0.011-0.018] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1119	chr7	70038968	70038969	rs4718964	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	7q11.22		rs4718964-T	0.41	2E-12				NR [NR] (imputed)	N
1119	chr7	70038968	70038969	rs4718964	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	7q11.22		rs4718964-T	0.41	2E-15		0.012	% increase	NR [NR] (imputed)	N
1119	chr7	70038968	70038969	rs4718964	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	7q11.22	NR	rs4718964-?	NR	4E-10				Affymetrix [~ 8270000] (imputed)	N
1119	chr7	70038968	70038969	rs4718964	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	7q11.22		rs4718964-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1119	chr7	70040447	70040448	rs4718965	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	7q11.22		rs4718965-C	0.11	9E-11		6.49	z score increase	Affymetrix [9061022] (imputed)	N
1119	chr7	70040447	70040448	rs4718965	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	7q11.22	NR	rs4718965-C	0.1167	1E-10				NR [9056863] (imputed)	N
1119	chr7	70045442	70045443	rs67463976	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	7q11.22	NR	rs67463976-C	0.4173	9E-11		0.016257193	[0.011-0.021] unit increase	Affymetrix [10549349] (imputed)	N
1119	chr7	70045940	70045941	rs10237317	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	7q11.22	NA	rs10237317-A	0.5872	1E-11		0.0112	[0.0079-0.0145] unit decrease	NR [~ 27400000] (imputed)	N
1119	chr7	70045940	70045941	rs10237317	22925353	Lee HJ	2012-08-25	J Affect Disord	A genome-wide association study of seasonal pattern mania identifies NF1A as a possible susceptibility gene for bipolar disorder.	Bipolar disorder	2,191 European ancestry cases, 1,434 European ancestry controls	NA	7q11.22	AUTS2	rs10237317-?	NR	5E-6	(SM vs. Control)	1.775	[NR]	Affymetrix [703012]	N
1119	chr7	70047404	70047405	rs17492269	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	7q11.22	NR	rs17492269-G	0.823585	3E-9		0.00981875	[0.0066-0.013] unit increase	Affymetrix [16585854] (imputed)	N
1119	chr7	70047404	70047405	rs17492269	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	7q11.22	NR	rs17492269-G	0.823585	2E-6		0.00903047	[0.0053-0.0127] unit increase	Affymetrix [16585866] (imputed)	N
1119	chr7	70053105	70053106	rs38319	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Coffee consumption	335,909 European ancestry individuals	39,924 European ancestry individuals	7q11.22	AUTS2	rs38319-G	0.8211	6E-7		0.0096	[0.0059-0.0133] unit increase	Affymetrix [~ 7740000] (imputed)	N
1119	chr7	70067314	70067315	rs38314	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	7q11.22	Intergenic	rs38314-A	0.496005328464513	2E-8		0.01691833	unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1119	chr7	70067678	70067679	rs38313	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	7q11.22	AUTS2	rs38313-G	0.505	6E-6	(EA, women)	0.021	[0.012-0.03] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1119	chr7	70070505	70070506	rs38303	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 203)	19,670 European ancestry individuals	NA	7q11.22		rs38303-?	NR	4E-9				NR [9705931] (imputed)	N
1119	chr7	70071516	70071517	rs149460031	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-8 levels	3,526 Finnish ancestry individuals	NA	7q11.22	NR	rs149460031-G		2E-6		0.7142	[0.42-1.01] SD units decrease	NR [10700000] (imputed)	N
1119	chr7	70073156	70073157	rs6955467	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Subjective well-being	298,420 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	7q11.22	NR	rs6955467-A	0.625	5E-7		0.015605109	[0.0095-0.0217] unit decrease	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
1119	chr7	70106309	70106310	rs2866720	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		7q11.22	AUTS2	rs2866720-C	0.614657	1E-10		0.00912913	[0.0063-0.0119] unit decrease	Affymetrix [12370749]	N
1119	chr7	70106309	70106310	rs2866720	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	7q11.22	NR	rs2866720-?	NR	7E-11				Affymetrix [~ 8270000] (imputed)	N
1119	chr7	70111953	70111954	rs76974091	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	7q11.22	NR	rs76974091-?	NR	3E-8	(right inferior lateral ventricle)			NR [9227495] (imputed)	N
1119	chr7	70113408	70113409	rs4718976	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	7q11.22		rs4718976-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1119	chr7	70113408	70113409	rs4718976	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	7q11.22	NR	rs4718976-C	0.694537	1E-17		0.017869	[0.014-0.022] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1119	chr7	70120569	70120570	rs10244956	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q11.22	NR	rs10244956-C	0.69375	4E-15				Affymetrix, Illumina [23472807] (imputed)	N
1120	chr7	70140082	70140083	rs35791080	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	7q11.22		rs35791080-T	NR	8E-9		0.0133	[0.0088-0.0178] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
1120	chr7	70140926	70140927	rs79048874	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	7q11.22		rs79048874-C	0.026743	4E-8		0.0355148	[0.023-0.048] unit decrease	Illumina [13479295] (imputed)	N
1120	chr7	70144847	70144848	rs10234816	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	7q11.22	AUTS2	rs10234816-C	0.173004	5E-11		0.01921403	[0.013-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1120	chr7	70158863	70158864	rs12536766	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	7q11.22	NR	rs12536766-T	0.5704130000000001	4E-13		0.00570564	[0.004-0.0074] unit increase	Affymetrix [16582909] (imputed)	N
1120	chr7	70158863	70158864	rs12536766	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	7q11.22	NR	rs12536766-T	0.5696490000000001	6E-9		0.00667579	[0.0044-0.009] unit increase	Affymetrix [16582621] (imputed)	N
1120	chr7	70158863	70158864	rs12536766	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	7q11.22	NR	rs12536766-T	0.5704130000000001	2E-7		0.00474138	[0.0029-0.0066] unit increase	Affymetrix [16582965] (imputed)	N
1120	chr7	70167624	70167625	rs12698915	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	7q11.22	NR	rs12698915-C	0.101244	5E-8		0.0599942	[0.038-0.082] unit increase	Affymetrix [17914406] (imputed)	N
1120	chr7	70173449	70173450	rs73165361	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	7q11.22	Intergenic	rs73165361-A	0.9164	7E-9		0.0204	[0.014-0.027] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1120	chr7	70178229	70178230	rs35075890	33242228	Niu Y	2020-11-26	J Cell Mol Med	Genome-wide association study identifies 7q11.22 and 7q36.3 associated with noise-induced hearing loss among Chinese population.	Hearing loss in noise exposure	89 Chinese ancestry cases, 209 Chinese ancestry controls	53 Chinese ancestry cases, 360 Chinese ancestry controls	7q11.22	AUTS2, WBSCR17	rs35075890-G		1E-6		3.17	[1.91-4.55]	Illumina [3830431] (imputed)	N
1120	chr7	70187834	70187835	rs73165383	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	7q11.22	NR	rs73165383-?	NR	4E-7		5.056	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1120	chr7	70203672	70203673	rs7803932	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	7q11.22		rs7803932-A	NR	7E-11		0.0138	[0.0097-0.0179] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1120	chr7	70203672	70203673	rs7803932	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	7q11.22		rs7803932-?	NR	6E-8				NR [~ 8900000] (imputed)	N
1120	chr7	70203672	70203673	rs7803932	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	7q11.22	Intergenic	rs7803932-A	0.1585	4E-12	(MTAG)	0.017	[0.012-0.022] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1120	chr7	70203672	70203673	rs7803932	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	7q11.22	Intergenic	rs7803932-A	0.1588	1E-15	(MTAG)	0.018	[0.013-0.023] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1120	chr7	70203672	70203673	rs7803932	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	7q11.22		rs7803932-A	0.1667	2E-11		0.0127	[0.009-0.0164] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1120	chr7	70203672	70203673	rs7803932	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	7q11.22	Intergenic	rs7803932-A	0.1667	2E-14	(MTAG)	0.0135	[0.01-0.017] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1120	chr7	70203672	70203673	rs7803932	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	7q11.22	Intergenic	rs7803932-A	0.1709	5E-11	(MTAG)	0.02	[0.014-0.026] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1120	chr7	70211026	70211027	rs6946969	25628336	Hromatka BS	2015-01-26	Hum Mol Genet	Genetic variants associated with motion sickness point to roles for inner ear development, neurological processes and glucose homeostasis.	Motion sickness	80,494 European ancestry individuals	NA	7q11.22	AUTS2	rs6946969-G	0.658	2E-9		0.033	[0.022-0.043] unit increase	Illumina [7428049] (imputed)	N
1120	chr7	70215357	70215358	rs12698934	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	7q11.22	AUTS2	rs12698934-A	0.1668	8E-15		0.0198	[0.015-0.025] unit increase	Affymetrix [18391927] (imputed)	N
1120	chr7	70237298	70237299	rs75990240	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7q11.22	NR	rs75990240-G	0.02439	2E-9	(DDB1)	0.1637	NR unit increase	Illumina [1671387] (imputed)	N
1121	chr7	70254673	70254674	rs941346	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7q11.22		rs941346-?	NR	4E-15				NR [~ 8900000] (imputed)	N
1121	chr7	70367061	70367062	rs141219652	30679421	Felsky D	2019-01-24	Nat Commun	Neuropathological correlates and genetic architecture of microglial activation in elderly human brain.	Proportion of activated microglia (midfrontal cortex)	225 individuals	NA	7q11.22	intergenic	rs141219652-C	0.0226	9E-6		0.1083	NR unit increase	NR [NR] (imputed)	N
1121	chr7	70376357	70376358	rs541576497	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	7q11.22	RP11-575M4.1	rs541576497-A	0.9986	7E-7		1.4599	[0.88-2.04] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1121	chr7	70384936	70384937	rs10434985	34476894	Schmitz J	2021-09-03	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study and polygenic risk score analysis for hearing measures in children.	Hearing function (left/right asymmetry)	5,344 European ancestry children	NA	7q11.22		rs10434985-T	0.79	8E-7		0.12	[0.081-0.159] unit increase	Illumina [5305352] (imputed)	N
1122	chr7	70400699	70400700	rs4717568	30787463	Escala-Garcia M	2019-02-21	Br J Cancer	Genome-wide association study of germline variants and breast cancer-specific mortality.	Breast cancer specific mortality in estrogen receptor positive breast cancer	4,116 European ancestry cases, 60,055 European ancestry controls	NA	7q11.22	NR	rs4717568-?	NR	1E-7		0.88204163	[0.84-0.92]	Affymetrix, Illumina [~ 10400000] (imputed)	N
1122	chr7	70404836	70404837	rs58880514	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	1,505 Ashkenazi Jewish founder cases, 2,553 Ashkenazi Jewish founder controls	NA	7q11.22	intergenic	rs58880514-A	NR	2E-6		1.2987013	[NR]	Illumina [up to 9792010] (imputed)	N
1122	chr7	70449530	70449531	rs1546776	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Cerebrospinal fluid p-tau levels in normal cognition	305 European ancestry cognitively normal individuals	NA	7q11.22	AUTS2, WBSCR17	rs1546776-T	0.09	2E-7		0.8	[0.51-1.09] unit increase	Illumina [8252679] (imputed)	N
1122	chr7	70473004	70473005	rs1525293	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	7q11.22	Intergenic	rs1525293-?	NR	2E-6		1.37	[NR]	Affymetrix [492217] (imputed)	N
1122	chr7	70473004	70473005	rs1525293	23377640	GENDEP Investigators	2013-02-01	Am J Psychiatry	Common genetic variation and antidepressant efficacy in major depressive disorder: a meta-analysis of three genome-wide pharmacogenetic studies.	Major depressive disorder	Up to 2,256 European ancestry cases	NA	7q11.22	WBSCR17	rs1525293-C	0.66	2E-6	(remission - SSRI treated - 12 weeks)	1.7041	[1.48-1.92]	Affymetrix, Illumina [1200000] (imputed)	N
1122	chr7	70513154	70513155	rs7809752	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	7q11.22	NA	rs7809752-T		7E-13		0.0136002	[0.0099-0.0173] unit increase	Illumina [13288253] (imputed)	N
1123	chr7	70526890	70526891	rs6971782	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	7q11.22	WBSCR17	rs6971782-T	0.3198	3E-8		0.011877323	[0.0077-0.0161] unit decrease	Affymetrix [11514654] (imputed)	N
1123	chr7	70587144	70587145	rs62459614	24939585	Fransen E	2014-06-18	Eur J Hum Genet	Genome-wide association analysis demonstrates the highly polygenic character of age-related hearing impairment.	Age-related hearing impairment	1,489 European ancestry individuals	NA	7q11.22	WBSCR17	rs62459614-?		2E-6	(PC3)	0.1895	[NR] unit increase	Illumina [4167292] (imputed)	N
1123	chr7	70593064	70593065	rs113494645	30898391	Lawrenson K	2019-03-19	Gynecol Oncol	Genome-wide association studies identify susceptibility loci for epithelial ovarian cancer in east Asian women.	Epithelial ovarian cancer	3,238 East Asian ancestry cases, 4,083 East Asian ancestry controls	NA	7q11.22		rs113494645-?	NR	9E-6	(mucinous_all)	1.79		Illumina [11595112] (imputed)	N
1123	chr7	70614845	70614846	rs56212584	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in ever smokers	23,223 European ancestry cases,  16,964 European ancestry controls	NA	7q11.22	WBSCR17	rs56212584-G	0.093779099	8E-6		1.1518074	[1.08242137-1.225641245]	Illumina [10439017] (imputed)	N
1123	chr7	70622426	70622427	rs182033693	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	7q11.22	WBSCR17	rs182033693-C	1.0	5E-6	(AA)	0.54	unit increase	Illumina [NR] (imputed)	N
1123	chr7	70634454	70634455	rs17142629	34304350	Lim WY	2021-07-25	Genes Genomics	Identification of genetic variants for blood insulin level in sex-stratified Korean population and evaluation of the causal relationship between blood insulin level and polycystic ovary syndrome.	Insulin levels	4,658 Korean ancestry females	NA	7q11.22		rs17142629-T	0.01	2E-6		2.73	unit increase	Affymetrix [NR] (imputed)	N
1124	chr7	70648712	70648713	rs1796085	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Monokine induced by gamma interferon levels	3,685 Finnish ancestry individuals	NA	7q11.22	NR	rs1796085-C	NR	2E-7		0.2096	[0.13-0.29] SD units increase	NR [10700000] (imputed)	N
1124	chr7	70658176	70658177	rs1202660	31127053	Tang Y	2019-05-24	Diabetes	A Genetic Locus on Chromosome 2q24 Predicting Peripheral Neuropathy Risk in Type 2 Diabetes: Results From the ACCORD and BARI 2D Studies.	Diabetic peripheral neuropathy in type 2 diabetes	4,384 European ancestry cases, 784 European ancestry controls	791 European ancestry cases, 158 European ancestry controls, 1,345 African American individuals	7q11.22	WBSCR17	rs1202660-?	NR	3E-6	(EA)	1.3333333	[1.18-1.49]	Affymetrix, Illumina [6847206] (imputed)	N
1124	chr7	70675644	70675645	rs7807224	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage Migration Inhibitory Factor levels	3,494 Finnish ancestry individuals	NA	7q11.22	NR	rs7807224-C	NR	9E-6		0.2085	[0.12-0.3] SD units decrease	NR [10700000] (imputed)	N
1124	chr7	70738728	70738729	rs7794356	26083242	Dahlin A	2015-06-17	PLoS One	Genome-Wide Association Study Identifies Novel Pharmacogenomic Loci For Therapeutic Response to Montelukast in Asthma.	Response to montelukast in asthma (change in FEV1)	88 European ancestry cases, 10 African ancestry cases, 35 Asian ancestry cases	101 European ancestry cases, 33 African ancestry cases, 50 Asian ancestry cases	7q11.22	WBSCR17	rs7794356-A	NR	9E-7		110.0	[NR] mL increase (CLIC cohort)	Illumina [532264]	N
1124	chr7	70749133	70749134	rs568356546	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	7q11.22	WBSCR17	rs568356546-A	0.001	7E-6		1.7214	[0.97-2.47] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1126	chr7	70958772	70958773	rs4719128	28078323	Raj T	2016-12-21	Neurol Genet	Genetic architecture of age-related cognitive decline in African Americans.	Cognitive decline (age-related)	3,964 African American ancestry individuals.	NA	7q11.22	AUTS2, WBSCR17	rs4719128-?		3E-6		0.004	unit decrease	Illumina [13900000] (imputed)	N
1126	chr7	70984257	70984258	rs6460661	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	7q11.22	Intergenic	rs6460661-A	0.751	2E-8	(MTAG)	0.0086	[0.0057-0.0115] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1126	chr7	70999107	70999108	rs4557585	30648747	Dudenkov TM	2019-01-16	Clin Pharmacol Ther	Anastrozole Aromatase Inhibitor Plasma Drug Concentration Genome-Wide Association Study: Functional Epistatic Interaction between SLC38A7 and ALPPL2.	Plasma anastrozole concentration in anastrozole-treated estrogen receptor positive breast cancer	634 European ancestry individuals, 40 African ancestry individuals, 13 Asian ancestry individuals	NA	7q11.22	NR	rs4557585-G	0.3817	3E-6		0.2495	[0.15-0.35] unit increase	Illumina [~ 600000] (imputed)	N
1126	chr7	70999141	70999142	rs11769266	30648747	Dudenkov TM	2019-01-16	Clin Pharmacol Ther	Anastrozole Aromatase Inhibitor Plasma Drug Concentration Genome-Wide Association Study: Functional Epistatic Interaction between SLC38A7 and ALPPL2.	Plasma anastrozole concentration in anastrozole-treated estrogen receptor positive breast cancer	634 European ancestry individuals, 40 African ancestry individuals, 13 Asian ancestry individuals	NA	7q11.22	NR	rs11769266-G	0.3817	3E-6		0.2495	[0.15-0.35] unit increase	Illumina [~ 600000] (imputed)	N
1126	chr7	71000613	71000614	rs6460664	30648747	Dudenkov TM	2019-01-16	Clin Pharmacol Ther	Anastrozole Aromatase Inhibitor Plasma Drug Concentration Genome-Wide Association Study: Functional Epistatic Interaction between SLC38A7 and ALPPL2.	Plasma anastrozole concentration in anastrozole-treated estrogen receptor positive breast cancer	634 European ancestry individuals, 40 African ancestry individuals, 13 Asian ancestry individuals	NA	7q11.22	NR	rs6460664-C	0.3768	2E-6		0.2535	[0.15-0.36] unit increase	Illumina [~ 600000] (imputed)	N
1126	chr7	71016158	71016159	rs4719147	22566498	Turner ST	2012-05-07	Hypertension	Genomic association analysis identifies multiple loci influencing antihypertensive response to an angiotensin II receptor blocker.	Response to angiotensin II receptor blocker therapy	198 European ancestry hypertensive individuals, 193 African American hypertensive individuals	NA	7q11.22	WBSCR17	rs4719147-T	NR	2E-6	(AA)	1.13	[0.64-1.62] unit increase	Affymetrix [~ 2300000] (imputed)	N
1127	chr7	71143488	71143489	rs139139710	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Logical memory (delayed recall) in normal cognition	305 European ancestry cognitively normal individuals	NA	7q11.22	WBSCR17, MIR3914-1, CALN1	rs139139710-A	0.03	6E-7		0.69	[0.42-0.96] unit increase	Illumina [7797256] (imputed)	N
1127	chr7	71166491	71166492	rs71551218	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 1 levels	252 European ancestry individuals	NA	7q11.22		rs71551218-C	NR	1E-5		23.34	[13.21-33.47] unit increase	Illumina [NR] (imputed)	N
1128	chr7	71189096	71189097	rs139177122	33907307	Liu Y	2021-04-27	Int J Obes (Lond)	Genome-wide association study of neck circumference identifies sex-specific loci independent of generalized adiposity.	Neck circumference	8,732 European American and African American ancestry men	NA	7q11.22	NR	rs139177122-?	NR	9E-9		0.8301	NR unit decrease	Affymetrix, Illumina [7784259] (imputed)	N
1128	chr7	71210799	71210800	rs2024235	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	7q11.22	NR	rs2024235-?	NR	1E-6				Affymetrix [NR]	N
1128	chr7	71236853	71236854	rs7802051	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	7q11.22	NR	rs7802051-?	NR	7E-6				Affymetrix [NR]	N
1128	chr7	71253651	71253651	rs142168171	29422769	Shah RL	2018-02-05	Mol Vis	A genome-wide association study of corneal astigmatism: The CREAM Consortium.	Corneal astigmatism	9,293 European ancestry cases, 12,957 European ancestry controls, 4,349 Asian ancestry cases, 4,771 Asian ancestry controls	NA	7q11.22	CALN1	rs142168171-I	0.09	9E-6		1.37	[1.19-1.57]	NR [~ 55000000] (imputed)	N
1129	chr7	71307371	71307372	rs987034	29855537	Hirata T	2018-05-31	Sci Rep	Japanese GWAS identifies variants for bust-size, dysmenorrhea, and menstrual fever that are eQTLs for relevant protein-coding or long non-coding RNAs.	Menstruation quality of life impact (acne)	1,115 Japanese ancestry female cases, 4,619 Japanese ancestry female controls	1,204 Japanese ancestry female cases, 4,410 Japanese ancestry female controls	7q11.22	NR	rs987034-T	0.304062857	7E-6		0.16414963	[0.092-0.236] unit increase	Affymetrix [536506]	N
1129	chr7	71364796	71364797	rs34603271	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	7q11.22	NR	rs34603271-A	NR	4E-10		0.0287	[0.02-0.038] unit decrease	Affymetrix [9000000] (imputed)	N
1129	chr7	71386613	71386614	rs13229300	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	7q11.22		rs13229300-C	0.726006	3E-9		0.0263507	[0.018-0.035] unit increase	NR [11722792] (imputed)	N
1129	chr7	71386613	71386614	rs13229300	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	7q11.22		rs13229300-C	0.726006	4E-8		0.0248691	[0.016-0.034] unit decrease	NR [11722792] (imputed)	N
1129	chr7	71388849	71388850	rs11766496	22837378	Wilk JB	2012-07-26	Am J Respir Crit Care Med	Genome-wide association studies identify CHRNA5/3 and HTR4 in the development of airflow obstruction.	Airflow obstruction	up to 3,368 European ancestry cases, up to 29,507 European ancestry controls	331 European ancestry cases, 2,550 European ancestry controls	7q11.22	CALN1	rs11766496-C	0.12	2E-6	(All)	1.3		Affymetrix, Illumina [up to 2500000] (imputed)	N
1129	chr7	71428959	71428960	rs3973896	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	7q11.22	NR	rs3973896-?	NR	3E-11				Affymetrix [~ 8270000] (imputed)	N
1129	chr7	71429307	71429308	rs10950289	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	7q11.22	NA	rs10950289-A	0.8388	1E-11		0.0177	[0.013-0.023] unit increase	NR [~ 27400000] (imputed)	N
1129	chr7	71429307	71429308	rs10950289	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	7q11.22	NA	rs10950289-A	0.8388	1E-11		0.0177	[0.013-0.023] unit increase	NR [~ 27400000] (imputed)	N
1130	chr7	71437103	71437104	rs12538435	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	7q11.22		rs12538435-?	NR	4E-14				NR [~ 8900000] (imputed)	N
1130	chr7	71493741	71493742	rs2867566	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	7q11.22	Intergenic	rs2867566-A	0.2951	3E-10	(MTAG)	0.009	[0.0063-0.0117] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1131	chr7	71575713	71575714	rs860010	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	7q11.22	NR	rs860010-?	NR	6E-11				Affymetrix [NR]	N
1131	chr7	71580249	71580250	rs865225	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	7q11.22	NR	rs865225-A	NR	9E-9		5.757	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1131	chr7	71580761	71580762	rs860003	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs autism spectrum disorder (ordinary least squares (OLS))	40,675 schizophrenia cases, 18,381 autism spectrum disorder cases	NA	7q11.22		rs860003-?	NR	8E-9		0.0174	NR unit increase	NR [4484088] (imputed)	N
1131	chr7	71586048	71586049	rs861491	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	7q11.22		rs861491-C	NR	4E-10		0.0137	[0.0094-0.018] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1131	chr7	71586210	71586211	rs860001	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	7q11.22		rs860001-T	NR	2E-8		0.014	[0.0091-0.0189] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1131	chr7	71607106	71607107	rs147005985	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		CALN1	rs147005985-?	NR	9E-10		2.26004	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1131	chr7	71614216	71614217	rs113791338	32366958	Woodbury-Smith MR	2020-05-04	Sci Rep	Genome-wide association study of emotional empathy in children.	Emotional recognition	2,382 European ancestry boys	NA	7q11.22	CALN1	rs113791338-A	0.033	5E-7		1134.17	[694.76-1573.58] unit decrease	Illumina [27449291] (imputed)	N
1131	chr7	71654355	71654356	rs12699125	21685187	Siedlinski M	2011-06-16	Thorax	Genome-wide association study of smoking behaviours in patients with COPD.	Lifetime average cigarettes per day in chronic obstructive pulmonary disease	3,440 European ancestry cases	NA	7q11.22	CALN1	rs12699125-A	0.66	3E-6		0.072	unit increase	Illumina [~ 6300000] (imputed)	N
1131	chr7	71655225	71655226	rs73141567	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	7q11.22	NR	rs73141567-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
1131	chr7	71664406	71664407	rs13227753	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	7q11.22	NR	rs13227753-T	NR	3E-13		0.044	[0.032-0.056] unit decrease	Affymetrix [9000000] (imputed)	N
1131	chr7	71680702	71680703	rs4719220	24529757	Xie T	2014-01-17	Neurobiol Aging	Genome-wide association study combining pathway analysis for typical sporadic amyotrophic lateral sclerosis in Chinese Han populations.	Amyotrophic lateral sclerosis (sporadic)	250 Han Chinese ancestry cases, 250 Han Chinese ancestry controls	NA	7q11.22	CALN1	rs4719220-?		4E-6				Illumina [859311]	N
1131	chr7	71689673	71689674	rs34711194	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	7q11.22	NR	rs34711194-A	NR	7E-11		6.53	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1131	chr7	71692389	71692390	rs7808347	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	7q11.22	NR	rs7808347-T	NR	3E-10		6.313	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1132	chr7	71720680	71720681	rs78193153	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	7q11.22		rs78193153-A	0.0647	3E-11		0.0191	[0.013-0.025] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1132	chr7	71723882	71723883	rs34858520	30531941	Doherty A	2018-12-10	Nat Commun	GWAS identifies 14 loci for device-measured physical activity and sleep duration.	Sedentary behaviour duration	91,105 European ancestry individuals	NA	7q11.22	CALN1	rs34858520-A	0.558	4E-9		0.028	[0.018-0.038] SD units increase	NR [9926106] (imputed)	N
1132	chr7	71734573	71734574	rs7783256	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	7q11.22	CALN1	rs7783256-C	NR	3E-12		0.020483717	[0.015-0.026] unit decrease	Affymetrix [NR]	N
1132	chr7	71739915	71739916	rs35417702	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	7q11.22	CALN1	rs35417702-?	NR	1E-10		0.01316949	[0.0092-0.0172] unit decrease	NR [7306098]	N
1132	chr7	71739915	71739916	rs35417702	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	7q11.22		rs35417702-T	0.5235	2E-27		0.0152	[0.012-0.018] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1132	chr7	71741231	71741232	rs35526560	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	7q11.22	NR	rs35526560-C	0.432406	1E-11		0.043232225	[0.031-0.056] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1132	chr7	71741231	71741232	rs35526560	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	7q11.22	Intergenic	rs35526560-C	0.4769	2E-36	(MTAG)	0.0165	[0.014-0.019] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1132	chr7	71741231	71741232	rs35526560	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	7q11.22	Intergenic	rs35526560-C	0.4752	2E-23	(MTAG)	0.0229	[0.018-0.027] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1132	chr7	71741231	71741232	rs35526560	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	7q11.22	Intergenic	rs35526560-C	0.4752	7E-12		0.0196	[0.014-0.025] unit increase	Affymetrix, Illumina [10100000] (imputed)	N
1132	chr7	71741796	71741797	rs756912	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	7q11.22	NR	rs756912-T	0.5217	1E-9		0.013540428	NR unit decrease	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
1132	chr7	71745698	71745699	rs35069269	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	7q11.22	Intergenic	rs35069269-A	0.4471	2E-19	(MTAG)	0.0162	[0.013-0.02] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1132	chr7	71745698	71745699	rs35069269	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	7q11.22	Intergenic	rs35069269-G	0.5529	4E-11		0.013	[0.0091-0.0169] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1132	chr7	71745698	71745699	rs35069269	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	7q11.22	Intergenic	rs35069269-A	0.4471	1E-32	(MTAG)	0.0197	[0.016-0.023] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1132	chr7	71750297	71750298	rs1978102	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	7q11.22	CALN1	rs1978102-T	0.4701	2E-8		0.011307157	[0.0073-0.0153] unit decrease	Affymetrix [up to 18485882] (imputed)	N
1132	chr7	71750297	71750298	rs1978102	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	7q11.22		rs1978102-T	0.5209	5E-27	(conditional-joint)	0.0151	[0.012-0.018] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1132	chr7	71751315	71751316	rs12699131	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (college completion)	280,007 European ancestry individuals	NA	7q11.22	NR	rs12699131-A	0.4801	3E-8		1.0331851	[NR]	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
1132	chr7	71751315	71751316	rs12699131	21926974	Ripke S	2011-09-18	Nat Genet	Genome-wide association study identifies five new schizophrenia loci.	Schizophrenia	9,394 European ancestry cases, 12,462 European ancestry controls	8,442 European ancestry cases, 21,397 European ancestry controls	7q11.22	NR	rs12699131-?	NR	2E-6		1.08	[1.04-1.11]	Affymetrix, Illumina [1252901] (imputed)	N
1132	chr7	71752651	71752652	rs2867673	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	7q11.22	CALN1	rs2867673-?		2E-9				Affymetrix, Illumina [NR] (imputed)	N
1132	chr7	71758633	71758634	rs12532494	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	7q11.22		rs12532494-?	NR	8E-15				NR [~ 8900000] (imputed)	N
1132	chr7	71759068	71759069	rs56150095	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs ADHD (ordinary least squares (OLS))	40,675 schizophrenia cases, 19,099 ADHD cases	NA	7q11.22		rs56150095-?	NR	5E-12		0.0238	NR unit decrease	NR [4428082] (imputed)	N
1132	chr7	71759068	71759069	rs56150095	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Verbal-numerical reasoning	171,304 British ancestry individuals	NA	7q11.22		rs56150095-?	NR	3E-9				NR [7857346] (imputed)	N
1132	chr7	71759068	71759069	rs56150095	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	7q11.22	NR	rs56150095-A	NR	1E-15		7.997	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1132	chr7	71759068	71759069	rs56150095	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	7q11.22	CALN1	rs56150095-A	NR	1E-8		5.697	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1132	chr7	71763860	71763861	rs4719223	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	7q11.22	Intergenic	rs4719223-C	0.5432	1E-18		0.0201	[0.016-0.025] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1132	chr7	71770702	71770703	rs2944839	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	7q11.22	CALN1	rs2944839-T	NR	1E-13		0.02166132	[0.016-0.027] unit decrease	Affymetrix [NR]	N
1132	chr7	71779634	71779635	rs2944831	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	7q11.22	CALN1	rs2944831-A	0.2946	9E-11		1.0253152		Affymetrix [11880941] (imputed)	N
1132	chr7	71782459	71782460	rs78928669	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first birth	542,901 European ancestry individuals	NA	7q11.22	CALN1	rs78928669-A	0.9553	4E-8		0.142	[0.091-0.193] unit decrease	NR [9744772] (imputed)	N
1132	chr7	71795469	71795470	rs2944823	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	7q11.22	CALN1	rs2944823-A	NR	4E-8		1.059	[1.04-1.08]	Illumina [6627481] (imputed)	N
1132	chr7	71795469	71795470	rs2944823	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	7q11.22	CALN1	rs2944823-A	NR	3E-8		1.059	[1.04-1.08]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1132	chr7	71795591	71795592	rs2944822	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Ease of getting up in the morning	385,949 European ancestry individuals	NA	7q11.22	NR	rs2944822-T	0.4452	4E-9		0.0101	[0.0068-0.0134] unit increase	Affymetrix, Illumina [10862568] (imputed)	N
1132	chr7	71807185	71807186	rs55841409	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	7q11.22	NR	rs55841409-A	NR	2E-8		5.596	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1132	chr7	71808046	71808047	rs36104871	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	7q11.22		rs36104871-G	0.96952	5E-9		0.0695016	[0.046-0.093] unit decrease	NR [11722792] (imputed)	N
1132	chr7	71808046	71808047	rs36104871	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	7q11.22	CALN1	rs36104871-G	0.969889	2E-27		0.0645034	[0.053-0.076] unit increase	Affymetrix [NR] (imputed)	N
1132	chr7	71823435	71823436	rs2138759	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	7q11.22		rs2138759-A	0.297	2E-9		0.014	[0.01-0.018] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
1133	chr7	71837300	71837301	rs9638655	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	7q11.22	NR	rs9638655-A	NR	2E-13		7.35	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1133	chr7	71839407	71839408	rs1914395	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	7q11.22	NR	rs1914395-A	NR	4E-7		1.11	[NR]	Illumina [7158791] (imputed)	N
1133	chr7	71852172	71852173	rs79527984	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	7q11.22	NR	rs79527984-?	NR	9E-9		1.0522218	[1.03-1.07]	Affymetrix, Illumina [12447948] (imputed)	N
1133	chr7	71852172	71852173	rs79527984	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	7q11.22	CALN1	rs79527984-A	NR	3E-8		0.017027576	[0.011-0.023] unit decrease	Affymetrix [NR]	N
1133	chr7	71863821	71863822	rs10227076	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	7q11.22	NR	rs10227076-A	NR	4E-9		5.866	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1133	chr7	71873766	71873767	rs73133136	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	7q11.22	Intergenic	rs73133136-T	0.975	4E-8		0.0397	[0.025-0.054] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1133	chr7	71906930	71906931	rs145470583	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	7q11.22	Intergenic	rs145470583-T	0.039	1E-10	(MTAG)	0.0275	[0.019-0.036] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1133	chr7	71906930	71906931	rs145470583	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	7q11.22	Intergenic	rs145470583-T	0.0351	9E-11	(MTAG)	0.0405	[0.028-0.053] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1133	chr7	71921463	71921464	rs76918518	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7q11.22		rs76918518-?	NR	9E-9				NR [~ 8900000] (imputed)	N
1133	chr7	71947913	71947914	rs191402437	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	7q11.22		rs191402437-A	0.987921	4E-8		0.102041	[0.066-0.138] unit increase	NR [11722792] (imputed)	N
1133	chr7	71947913	71947914	rs191402437	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small VLDL	115,082 European ancestry individuals	NA	7q11.22		rs191402437-A	0.987923	3E-8		0.105855	[0.069-0.143] unit increase	NR [11722792] (imputed)	N
1133	chr7	71958097	71958098	rs150222117	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	7q11.22		rs150222117-C	0.952649	3E-8		0.0551931	[0.036-0.075] unit increase	NR [11722792] (imputed)	N
1134	chr7	71971530	71971531	rs77393312	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	7q11.22	NR	rs77393312-A	NR	2E-11		0.0487	[0.034-0.063] unit decrease	Affymetrix [9000000] (imputed)	N
1134	chr7	71997828	71997829	rs71553230	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	7q11.22		rs71553230-T	0.963513	1E-12		0.0811118	[0.059-0.103] unit increase	NR [11722792] (imputed)	N
1134	chr7	71997828	71997829	rs71553230	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	7q11.22		rs71553230-T	0.963513	1E-9		0.0706279	[0.048-0.093] unit increase	NR [11722792] (imputed)	N
1134	chr7	71997828	71997829	rs71553230	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	7q11.22		rs71553230-T	0.963513	1E-9		0.0705304	[0.048-0.093] unit increase	NR [11722792] (imputed)	N
1134	chr7	71997828	71997829	rs71553230	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	7q11.22		rs71553230-T	0.963513	2E-8		0.0642022	[0.042-0.087] unit increase	NR [11722792] (imputed)	N
1134	chr7	71997828	71997829	rs71553230	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	7q11.22		rs71553230-T	0.963513	4E-10		0.0713595	[0.049-0.094] unit increase	NR [11722792] (imputed)	N
1134	chr7	71997828	71997829	rs71553230	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large VLDL	115,082 European ancestry individuals	NA	7q11.22		rs71553230-T	0.963513	4E-9		0.0678787	[0.045-0.09] unit increase	NR [11722792] (imputed)	N
1134	chr7	71997828	71997829	rs71553230	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small VLDL	115,082 European ancestry individuals	NA	7q11.22		rs71553230-T	0.963513	1E-10		0.0751197	[0.052-0.098] unit increase	NR [11722792] (imputed)	N
1134	chr7	71997828	71997829	rs71553230	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small HDL	115,082 European ancestry individuals	NA	7q11.22		rs71553230-T	0.963513	1E-10		0.0755057	[0.053-0.098] unit increase	NR [11722792] (imputed)	N
1134	chr7	71997828	71997829	rs71553230	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium HDL	115,082 European ancestry individuals	NA	7q11.22		rs71553230-T	0.963513	2E-8		0.0666418	[0.043-0.09] unit increase	NR [11722792] (imputed)	N
1134	chr7	71997828	71997829	rs71553230	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in VLDL	115,082 European ancestry individuals	NA	7q11.22		rs71553230-T	0.963513	2E-8		0.0654466	[0.043-0.088] unit increase	NR [11722792] (imputed)	N
1134	chr7	71997828	71997829	rs71553230	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in HDL	115,082 European ancestry individuals	NA	7q11.22		rs71553230-T	0.963513	3E-8		0.0654674	[0.042-0.089] unit increase	NR [11722792] (imputed)	N
1134	chr7	71997828	71997829	rs71553230	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total triglycerides levels	115,082 European ancestry individuals	NA	7q11.22		rs71553230-T	0.963513	2E-8		0.0659716	[0.043-0.089] unit increase	NR [11722792] (imputed)	N
1134	chr7	71997828	71997829	rs71553230	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large VLDL	115,082 European ancestry individuals	NA	7q11.22		rs71553230-T	0.963513	3E-8		0.0644587	[0.042-0.087] unit increase	NR [11722792] (imputed)	N
1134	chr7	71997828	71997829	rs71553230	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	7q11.22		rs71553230-T	0.963513	9E-9		0.0644716	[0.043-0.086] unit increase	NR [11722792] (imputed)	N
1134	chr7	71997828	71997829	rs71553230	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of monounsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	7q11.22		rs71553230-T	0.963513	3E-8		0.0641464	[0.041-0.087] unit increase	NR [11722792] (imputed)	N
1134	chr7	71997828	71997829	rs71553230	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	7q11.22		rs71553230-T	0.963513	1E-10		0.0744035	[0.052-0.097] unit decrease	NR [11722792] (imputed)	N
1134	chr7	71997828	71997829	rs71553230	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	7q11.22		rs71553230-T	0.963513	1E-8		0.0663627	[0.044-0.089] unit increase	NR [11722792] (imputed)	N
1134	chr7	71997828	71997829	rs71553230	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	7q11.22		rs71553230-T	0.963513	4E-11		0.075866	[0.053-0.098] unit decrease	NR [11722792] (imputed)	N
1134	chr7	71997828	71997829	rs71553230	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	7q11.22		rs71553230-T	0.963513	7E-9		0.0673636	[0.045-0.09] unit decrease	NR [11722792] (imputed)	N
1134	chr7	71997828	71997829	rs71553230	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	7q11.22		rs71553230-T	0.963513	5E-9		0.0672185	[0.045-0.09] unit decrease	NR [11722792] (imputed)	N
1134	chr7	71997828	71997829	rs71553230	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	7q11.22		rs71553230-T	0.963513	1E-9		0.0697038	[0.047-0.092] unit decrease	NR [11722792] (imputed)	N
1134	chr7	71997828	71997829	rs71553230	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	7q11.22		rs71553230-T	0.963513	2E-13		0.0844767	[0.062-0.107] unit decrease	NR [11722792] (imputed)	N
1134	chr7	71997828	71997829	rs71553230	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	7q11.22		rs71553230-T	0.963513	3E-8		0.0644344	[0.042-0.087] unit increase	NR [11722792] (imputed)	N
1134	chr7	71997828	71997829	rs71553230	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	7q11.22		rs71553230-T	0.963513	4E-12		0.0786996	[0.057-0.101] unit decrease	NR [11722792] (imputed)	N
1134	chr7	71997828	71997829	rs71553230	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	7q11.22		rs71553230-T	0.963513	3E-11		0.0753103	[0.053-0.097] unit decrease	NR [11722792] (imputed)	N
1134	chr7	71997828	71997829	rs71553230	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	7q11.22		rs71553230-T	0.963513	3E-12		0.0796555	[0.057-0.102] unit decrease	NR [11722792] (imputed)	N
1134	chr7	71997828	71997829	rs71553230	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	7q11.22		rs71553230-T	0.963513	7E-11		0.0739985	[0.052-0.096] unit decrease	NR [11722792] (imputed)	N
1134	chr7	71997828	71997829	rs71553230	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	7q11.22		rs71553230-T	0.963513	3E-8		0.0630292	[0.041-0.085] unit decrease	NR [11722792] (imputed)	N
1134	chr7	71997828	71997829	rs71553230	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for VLDL particles	115,082 European ancestry individuals	NA	7q11.22		rs71553230-T	0.963513	2E-9		0.0678065	[0.046-0.09] unit increase	NR [11722792] (imputed)	N
1134	chr7	72032357	72032358	rs35867424	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	7q11.22		rs35867424-G	0.970475	2E-11		0.0811817	[0.057-0.105] unit increase	NR [11722792] (imputed)	N
1134	chr7	72032357	72032358	rs35867424	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	7q11.22		rs35867424-G	0.970468	1E-15		0.094062	[0.071-0.117] unit increase	NR [11722792] (imputed)	N
1134	chr7	72032357	72032358	rs35867424	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	7q11.22		rs35867424-G	0.970467	3E-11		0.0782657	[0.055-0.101] unit increase	NR [11722792] (imputed)	N
1134	chr7	72032357	72032358	rs35867424	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small LDL	115,082 European ancestry individuals	NA	7q11.22		rs35867424-G	0.970467	2E-13		0.0889795	[0.065-0.113] unit increase	NR [11722792] (imputed)	N
1134	chr7	72032357	72032358	rs35867424	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium VLDL	115,082 European ancestry individuals	NA	7q11.22		rs35867424-G	0.970467	1E-13		0.0897318	[0.066-0.113] unit increase	NR [11722792] (imputed)	N
1134	chr7	72032357	72032358	rs35867424	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium LDL	115,082 European ancestry individuals	NA	7q11.22		rs35867424-G	0.970467	6E-11		0.0797451	[0.056-0.104] unit increase	NR [11722792] (imputed)	N
1134	chr7	72032357	72032358	rs35867424	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in LDL	115,082 European ancestry individuals	NA	7q11.22		rs35867424-G	0.970467	3E-9		0.0726208	[0.049-0.097] unit increase	NR [11722792] (imputed)	N
1134	chr7	72032357	72032358	rs35867424	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in IDL	115,082 European ancestry individuals	NA	7q11.22		rs35867424-G	0.970467	2E-8		0.0685839	[0.045-0.093] unit increase	NR [11722792] (imputed)	N
1134	chr7	72032357	72032358	rs35867424	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small VLDL	115,082 European ancestry individuals	NA	7q11.22		rs35867424-G	0.970467	1E-8		0.0702084	[0.046-0.094] unit increase	NR [11722792] (imputed)	N
1134	chr7	72032357	72032358	rs35867424	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large VLDL	115,082 European ancestry individuals	NA	7q11.22		rs35867424-G	0.970467	3E-12		0.0844001	[0.061-0.108] unit increase	NR [11722792] (imputed)	N
1134	chr7	72032357	72032358	rs35867424	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in VLDL	115,082 European ancestry individuals	NA	7q11.22		rs35867424-G	0.970467	8E-10		0.0752501	[0.051-0.099] unit increase	NR [11722792] (imputed)	N
1134	chr7	72032357	72032358	rs35867424	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total fatty acid levels	115,006 European ancestry individuals	NA	7q11.22		rs35867424-G	0.970469	7E-9		0.0713905	[0.047-0.096] unit increase	NR [11722792] (imputed)	N
1134	chr7	72032357	72032358	rs35867424	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large VLDL	115,082 European ancestry individuals	NA	7q11.22		rs35867424-G	0.970467	7E-12		0.082608	[0.059-0.106] unit increase	NR [11722792] (imputed)	N
1134	chr7	72032357	72032358	rs35867424	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large VLDL	115,082 European ancestry individuals	NA	7q11.22		rs35867424-G	0.970467	8E-13		0.0862342	[0.063-0.11] unit increase	NR [11722792] (imputed)	N
1134	chr7	72032357	72032358	rs35867424	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-3 fatty acid levels	115,006 European ancestry individuals	NA	7q11.22		rs35867424-G	0.970469	5E-8		0.0654256	[0.042-0.089] unit increase	NR [11722792] (imputed)	N
1134	chr7	72032357	72032358	rs35867424	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	7q11.22		rs35867424-G	0.970475	2E-10		0.077131	[0.053-0.101] unit decrease	NR [11722792] (imputed)	N
1134	chr7	72032357	72032358	rs35867424	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	7q11.22		rs35867424-G	0.970467	2E-9		0.0698927	[0.047-0.093] unit decrease	NR [11722792] (imputed)	N
1134	chr7	72032357	72032358	rs35867424	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	7q11.22		rs35867424-G	0.970467	4E-11		0.0799245	[0.056-0.104] unit increase	NR [11722792] (imputed)	N
1134	chr7	72032357	72032358	rs35867424	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	7q11.22		rs35867424-G	0.970467	2E-11		0.078597	[0.056-0.101] unit decrease	NR [11722792] (imputed)	N
1134	chr7	72032357	72032358	rs35867424	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	7q11.22		rs35867424-G	0.970467	1E-11		0.0821119	[0.058-0.106] unit increase	NR [11722792] (imputed)	N
1134	chr7	72032357	72032358	rs35867424	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large VLDL particles	115,082 European ancestry individuals	NA	7q11.22		rs35867424-G	0.970467	2E-13		0.0883961	[0.065-0.112] unit increase	NR [11722792] (imputed)	N
1134	chr7	72032357	72032358	rs35867424	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small VLDL particles	115,082 European ancestry individuals	NA	7q11.22		rs35867424-G	0.970467	3E-9		0.0726824	[0.049-0.097] unit increase	NR [11722792] (imputed)	N
1134	chr7	72032357	72032358	rs35867424	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large VLDL particles	115,082 European ancestry individuals	NA	7q11.22		rs35867424-G	0.970467	7E-13		0.0865587	[0.063-0.11] unit increase	NR [11722792] (imputed)	N
1134	chr7	72032357	72032358	rs35867424	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	7q11.22		rs35867424-G	0.970475	1E-13		0.0886179	[0.065-0.112] unit decrease	NR [11722792] (imputed)	N
1134	chr7	72032357	72032358	rs35867424	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	7q11.22		rs35867424-G	0.970467	7E-10		0.0744862	[0.051-0.098] unit decrease	NR [11722792] (imputed)	N
1134	chr7	72032357	72032358	rs35867424	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	7q11.22		rs35867424-G	0.970472	1E-9		0.072854	[0.049-0.096] unit decrease	NR [11722792] (imputed)	N
1134	chr7	72032357	72032358	rs35867424	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	7q11.22		rs35867424-G	0.970467	1E-8		0.0638987	[0.042-0.086] unit decrease	NR [11722792] (imputed)	N
1134	chr7	72032357	72032358	rs35867424	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	7q11.22		rs35867424-G	0.970467	7E-12		0.0828598	[0.059-0.107] unit increase	NR [11722792] (imputed)	N
1134	chr7	72032357	72032358	rs35867424	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	7q11.22		rs35867424-G	0.970475	2E-13		0.088228	[0.065-0.112] unit decrease	NR [11722792] (imputed)	N
1134	chr7	72032357	72032358	rs35867424	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	7q11.22		rs35867424-G	0.970467	6E-10		0.0734537	[0.05-0.097] unit decrease	NR [11722792] (imputed)	N
1134	chr7	72032357	72032358	rs35867424	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	7q11.22		rs35867424-G	0.970467	3E-9		0.0724797	[0.049-0.096] unit increase	NR [11722792] (imputed)	N
1134	chr7	72032357	72032358	rs35867424	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	7q11.22		rs35867424-G	0.970467	2E-9		0.067776	[0.046-0.09] unit decrease	NR [11722792] (imputed)	N
1134	chr7	72032357	72032358	rs35867424	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	7q11.22		rs35867424-G	0.970467	1E-9		0.0742772	[0.05-0.098] unit increase	NR [11722792] (imputed)	N
1134	chr7	72032357	72032358	rs35867424	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	7q11.22		rs35867424-G	0.970467	6E-13		0.086602	[0.063-0.11] unit increase	NR [11722792] (imputed)	N
1135	chr7	72129666	72129667	rs13238203	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7q11.22	NR	rs13238203-C	NR	6E-17		0.107	unit increase	Affymetrix [at least 7091467] (imputed)	N
1135	chr7	72129666	72129667	rs13238203	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7q11.22	NR	rs13238203-C	0.972	3E-16	(EA)	0.108	unit increase	Affymetrix [at least 7091467] (imputed)	N
1135	chr7	72129666	72129667	rs13238203	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Triglycerides	94,595 European ancestry individuals	93,982 European ancestry individuals	7q11.22	TYW1B	rs13238203-T	0.04	3E-6		0.059	[NR] mg/dL decrease	NR [NR] (imputed)	N
1135	chr7	72129666	72129667	rs13238203	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	Triglycerides	96,598 European ancestry individuals	NA	7q11.22	TYW1B	rs13238203-T	0.04	1E-9		7.91	[5.28-10.54] mg/dL decrease	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1135	chr7	72155833	72155834	rs139453187	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	7q11.22	POM121	rs139453187-T	0.93064	3E-9		0.0231995	[0.016-0.031] unit decrease	Affymetrix [NR] (imputed)	N
1135	chr7	72155833	72155834	rs139453187	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	7q11.22	Intergenic	rs139453187-T	0.9261	1E-8	(MTAG)	0.0195	[0.013-0.026] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1135	chr7	72155833	72155834	rs139453187	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	7q11.22	Intergenic	rs139453187-T	0.9263	7E-12	(MTAG)	0.0218	[0.016-0.028] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1135	chr7	72155833	72155834	rs139453187	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	7q11.22	Intergenic	rs139453187-T	0.9263	3E-9		0.0258	[0.017-0.034] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1135	chr7	72203889	72203890	rs79492119	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	7q11.23	TYW1B	rs79492119-A	0.1593	3E-6		0.0486	[0.028-0.069] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1135	chr7	72203889	72203890	rs79492119	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	7q11.23	TYW1B	rs79492119-A	0.1593	3E-6		0.0486	[0.028-0.069] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1136	chr7	72234175	72234176	rs34881399	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	7q11.23	NR	rs34881399-C	NR	2E-45		0.0987	[0.085-0.112] unit decrease	Affymetrix [9000000] (imputed)	N
1136	chr7	72234175	72234176	rs34881399	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	7q11.23	NR	rs34881399-C	NR	1E-13		0.0516	[0.038-0.065] unit decrease	Affymetrix [9000000] (imputed)	N
1136	chr7	72234175	72234176	rs34881399	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	7q11.23	NR	rs34881399-C	NR	3E-10		0.044	[0.03-0.058] unit decrease	Affymetrix [9000000] (imputed)	N
1136	chr7	72234175	72234176	rs34881399	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7q11.23	NR	rs34881399-T	NR	2E-18		0.111	unit increase	Affymetrix [at least 7091467] (imputed)	N
1136	chr7	72234175	72234176	rs34881399	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7q11.23	NR	rs34881399-T	0.973	6E-18	(EA)	0.112	unit increase	Affymetrix [at least 7091467] (imputed)	N
1136	chr7	72239873	72239874	rs56004000	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	7q11.23	Intergenic	rs56004000-T	0.2201	4E-9	(MTAG)	0.0095	[0.0064-0.0126] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1136	chr7	72247799	72247800	rs11976020	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	7q11.23	NR	rs11976020-A	0.228	4E-8		0.014528254	NR unit decrease	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
1136	chr7	72311816	72311817	rs2058059	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Subcutaneous adipose tissue	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	7q11.23	POM121	rs2058059-C	0.24	7E-6	(overall)			Affymetrix, Illumina [2500000] (imputed)	N
1137	chr7	72356672	72356673	rs183571045	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	7q11.23	NR	rs183571045-?	NR	8E-6		0.024021	[0.013-0.035] unit increase	Affymetrix [805426] (imputed)	N
1137	chr7	72362480	72362481	rs62463394	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	7q11.23	NR	rs62463394-G	NR	2E-20		0.0333	[0.026-0.04] unit decrease	Affymetrix [9000000] (imputed)	N
1137	chr7	72362480	72362481	rs62463394	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	7q11.23	NR	rs62463394-G	NR	4E-10		0.0225	[0.015-0.03] unit decrease	Affymetrix [9000000] (imputed)	N
1137	chr7	72370542	72370543	rs7782791	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	7q11.23	NR	rs7782791-?	NR	1E-6		4.884	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1137	chr7	72389656	72389657	rs13243883	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	7q11.23	NR	rs13243883-?	NR	9E-11				Affymetrix [~ 8270000] (imputed)	N
1137	chr7	72395788	72395789	rs141884613	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	7q11.23	NR	rs141884613-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
1137	chr7	72395788	72395789	rs141884613	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	7q11.23		rs141884613-?	NR	8E-9				NR [~ 8900000] (imputed)	N
1137	chr7	72403243	72403244	rs142219588	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	7q11.23	POM121	rs142219588-T	NR	3E-10		0.0637642	[0.044-0.084] unit decrease	Affymetrix [321788] (imputed)	N
1137	chr7	72403243	72403244	rs142219588	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	7q11.23	POM121	rs142219588-T	NR	3E-10		0.0613036	[0.042-0.08] unit decrease	Affymetrix [321016] (imputed)	N
1137	chr7	72414218	72414219	rs62463430	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	7q11.23	NSUN5	rs62463430-G	0.867192	1E-10		0.00233858	[0.0017-0.003] unit increase	Affymetrix [13995440] (imputed)	N
1137	chr7	72426121	72426122	rs404321	24952745	Arking DE	2014-06-22	Nat Genet	Genetic association study of QT interval highlights role for calcium signaling pathways in myocardial repolarization.	QT interval	Up to 70,389 European ancestry individuals, up to 672 Orcadian individuals	Up to 33,316 European ancestry individuals	7q11.23	NSUN5C	rs404321-A	0.005	2E-6		9.86	[5.78-13.94] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1140	chr7	72746647	72746648	rs6943090	22610502	Kennedy RB	2012-05-19	Hum Genet	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IL-12p40)	Up to 512 European ancestry individuals, up to 199 African American individuals	NA	7q11.23	FKBP6, TRIM50	rs6943090-A		3E-7	(AA)			Illumina [NR]	N
1140	chr7	72754096	72754096	rs34823076	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	7q11.23	FKBP6	rs34823076-?	NR	7E-11		0.019830264	[0.014-0.026] unit increase	Illumina [27896057] (imputed)	N
1140	chr7	72757058	72757059	rs111423741	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	7q11.23	NR	rs111423741-A	NR	3E-11		0.0656	[0.046-0.085] unit decrease	Affymetrix [9000000] (imputed)	N
1140	chr7	72767450	72767451	rs1178968	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Triglyceride levels	28,183 East Asian ancestry individuals, 177,861 European ancestry individuals	10,857 Chinese ancestry individuals	7q11.23	TYW1B	rs1178968-T	0.124	2E-8	(Trans-ethnic initial)	0.0282	[0.019-0.037] unit decrease (EA Beta values)	Affymetrix, Illumina [up to 1900000] (imputed)	N
1140	chr7	72823776	72823777	rs42125	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	7q11.23		rs42125-A	0.976998	1E-9		0.0877725	[0.06-0.116] unit decrease	NR [11722792] (imputed)	N
1140	chr7	72823776	72823777	rs42125	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	7q11.23		rs42125-A	0.976998	1E-8		0.0834227	[0.055-0.112] unit decrease	NR [11722792] (imputed)	N
1140	chr7	72823776	72823777	rs42125	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very small VLDL	115,082 European ancestry individuals	NA	7q11.23		rs42125-A	0.976998	4E-10		0.0926172	[0.064-0.122] unit decrease	NR [11722792] (imputed)	N
1140	chr7	72823776	72823777	rs42125	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large VLDL	115,082 European ancestry individuals	NA	7q11.23		rs42125-A	0.976998	2E-9		0.0878208	[0.059-0.116] unit decrease	NR [11722792] (imputed)	N
1140	chr7	72823776	72823777	rs42125	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small VLDL	115,082 European ancestry individuals	NA	7q11.23		rs42125-A	0.976998	4E-11		0.0967313	[0.068-0.125] unit decrease	NR [11722792] (imputed)	N
1140	chr7	72823776	72823777	rs42125	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small HDL	115,082 European ancestry individuals	NA	7q11.23		rs42125-A	0.976998	1E-10		0.0945671	[0.066-0.123] unit decrease	NR [11722792] (imputed)	N
1140	chr7	72823776	72823777	rs42125	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large VLDL	115,082 European ancestry individuals	NA	7q11.23		rs42125-A	0.976998	8E-9		0.0843029	[0.056-0.113] unit decrease	NR [11722792] (imputed)	N
1140	chr7	72823776	72823777	rs42125	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in VLDL	115,082 European ancestry individuals	NA	7q11.23		rs42125-A	0.976998	8E-10		0.089705	[0.061-0.118] unit decrease	NR [11722792] (imputed)	N
1140	chr7	72823776	72823777	rs42125	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total triglycerides levels	115,082 European ancestry individuals	NA	7q11.23		rs42125-A	0.976998	7E-10		0.0903471	[0.062-0.119] unit decrease	NR [11722792] (imputed)	N
1140	chr7	72823776	72823777	rs42125	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large VLDL	115,082 European ancestry individuals	NA	7q11.23		rs42125-A	0.976998	1E-9		0.0892553	[0.061-0.118] unit decrease	NR [11722792] (imputed)	N
1140	chr7	72823776	72823777	rs42125	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	7q11.23		rs42125-A	0.976995	8E-10		0.0867301	[0.059-0.114] unit decrease	NR [11722792] (imputed)	N
1140	chr7	72823776	72823777	rs42125	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of monounsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	7q11.23		rs42125-A	0.976995	4E-8		0.0802422	[0.052-0.109] unit decrease	NR [11722792] (imputed)	N
1140	chr7	72823776	72823777	rs42125	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	7q11.23		rs42125-A	0.976998	4E-9		0.0858222	[0.057-0.114] unit decrease	NR [11722792] (imputed)	N
1140	chr7	72823776	72823777	rs42125	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Monounsaturated fatty acid levels	115,006 European ancestry individuals	NA	7q11.23		rs42125-A	0.976995	5E-9		0.0877391	[0.058-0.117] unit decrease	NR [11722792] (imputed)	N
1140	chr7	72823776	72823777	rs42125	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	7q11.23		rs42125-A	0.976998	1E-8		0.0824869	[0.054-0.111] unit increase	NR [11722792] (imputed)	N
1140	chr7	72823776	72823777	rs42125	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	7q11.23		rs42125-A	0.976998	1E-8		0.0837335	[0.055-0.112] unit decrease	NR [11722792] (imputed)	N
1140	chr7	72823776	72823777	rs42125	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of chylomicrons and extremely large VLDL particles	115,082 European ancestry individuals	NA	7q11.23		rs42125-A	0.976998	2E-8		0.0817363	[0.053-0.11] unit decrease	NR [11722792] (imputed)	N
1140	chr7	72823776	72823777	rs42125	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for VLDL particles	115,082 European ancestry individuals	NA	7q11.23		rs42125-A	0.976998	1E-8		0.0809065	[0.053-0.109] unit decrease	NR [11722792] (imputed)	N
1140	chr7	72823776	72823777	rs42125	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	7q11.23	FZD9	rs42125-A	0.976791	1E-8		0.0398455	[0.026-0.054] unit increase	Affymetrix [NR] (imputed)	N
1140	chr7	72830545	72830546	rs42238	28082259	Pankow JS	2017-01-12	Arterioscler Thromb Vasc Biol	Identification of Genetic Variants Linking Protein C and Lipoprotein Metabolism: The ARIC Study (Atherosclerosis Risk in Communities).	Protein C levels	10,778 European ancestry individuals, 2,706 African American individuals	NA	7q11.23	FZD9	rs42238-T	0.2	4E-9	(EA)	0.07	[NR] ?g/mL decrease	Affymetrix [at least 22484459] (imputed)	N
1140	chr7	72846743	72846744	rs782289776	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	7q11.23		rs782289776-G	NR	2E-8		0.0442	[0.029-0.06] unit increase	Affymetrix, Illumina [20521447] (imputed)	N
1140	chr7	72849220	72849221	rs73134914	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	7q11.23	FZD9	rs73134914-C	NR	4E-10		0.0567038	[0.039-0.074] unit decrease	Affymetrix [321788] (imputed)	N
1140	chr7	72849220	72849221	rs73134914	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	7q11.23	FZD9	rs73134914-C	NR	1E-9		0.0529164	[0.036-0.07] unit decrease	Affymetrix [321016] (imputed)	N
1140	chr7	72850177	72850178	rs1178947	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in HDL	115,082 European ancestry individuals	NA	7q11.23		rs1178947-T	0.794725	9E-9		0.0260769	[0.017-0.035] unit decrease	NR [11722792] (imputed)	N
1140	chr7	72850177	72850178	rs1178947	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	7q11.23	NR	rs1178947-C	0.20428599999999997	3E-16		0.00817634	[0.0061-0.0102] unit increase	Affymetrix [16582909] (imputed)	N
1140	chr7	72850177	72850178	rs1178947	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	7q11.23	NR	rs1178947-C	0.20428599999999997	2E-8		0.00638971	[0.0041-0.0087] unit increase	Affymetrix [16582965] (imputed)	N
1140	chr7	72850177	72850178	rs1178947	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	7q11.23	NR	rs1178947-T	0.795651	6E-10		0.0238711	[0.016-0.031] unit increase	Affymetrix [16577424] (imputed)	N
1140	chr7	72854548	72854549	rs71556711	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	7q11.23	NR	rs71556711-T	NR	4E-23		0.0416	[0.033-0.05] unit decrease	Affymetrix [9000000] (imputed)	N
1140	chr7	72854548	72854549	rs71556711	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	7q11.23	NR	rs71556711-T	NR	1E-213		0.1306	[0.12-0.14] unit decrease	Affymetrix [9000000] (imputed)	N
1140	chr7	72854548	72854549	rs71556711	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Testosterone levels	310,461 European ancestry individuals, 5,453 African ancestry individuals, 6,680 South Asian ancestry individuals	NA	7q11.23	NR	rs71556711-T	NR	6E-10		0.0271	[0.018-0.036] unit increase	Affymetrix [9000000] (imputed)	N
1140	chr7	72854548	72854549	rs71556711	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	7q11.23	NR	rs71556711-T	NR	1E-15		0.0335	[0.025-0.042] unit decrease	Affymetrix [9000000] (imputed)	N
1140	chr7	72854548	72854549	rs71556711	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	7q11.23	NR	rs71556711-T	NR	3E-13		0.0307	[0.022-0.039] unit increase	Affymetrix [9000000] (imputed)	N
1140	chr7	72854548	72854549	rs71556711	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	7q11.23	NR	rs71556711-T	NR	2E-16		0.0361	[0.027-0.045] unit increase	Affymetrix [9000000] (imputed)	N
1140	chr7	72854548	72854549	rs71556711	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	7q11.23	NR	rs71556711-T	NR	1E-10		0.0276	[0.019-0.036] unit increase	Affymetrix [9000000] (imputed)	N
1140	chr7	72854548	72854549	rs71556711	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	7q11.23	NR	rs71556711-T	NR	8E-59		0.0678	[0.06-0.076] unit decrease	Affymetrix [9000000] (imputed)	N
1140	chr7	72854548	72854549	rs71556711	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	7q11.23	NR	rs71556711-T	NR	2E-10		0.0266	[0.018-0.035] unit increase	Affymetrix [9000000] (imputed)	N
1140	chr7	72854548	72854549	rs71556711	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	7q11.23	NR	rs71556711-T	NR	3E-12		0.0292	[0.021-0.037] unit decrease	Affymetrix [9000000] (imputed)	N
1140	chr7	72854548	72854549	rs71556711	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	7q11.23	NR	rs71556711-T	NR	3E-37		0.0535	[0.045-0.062] unit decrease	Affymetrix [9000000] (imputed)	N
1140	chr7	72854548	72854549	rs71556711	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	7q11.23	NR	rs71556711-T	NR	3E-13		0.0306	[0.022-0.039] unit decrease	Affymetrix [9000000] (imputed)	N
1140	chr7	72854548	72854549	rs71556711	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	7q11.23	NR	rs71556711-T	NR	1E-10		0.0271	[0.019-0.035] unit increase	Affymetrix [9000000] (imputed)	N
1140	chr7	72855567	72855568	rs137909720	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	7q11.23	NR	rs137909720-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
1140	chr7	72856268	72856269	rs2240466	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	7q11.23	BAZ1B	rs2240466-G	0.877087	8E-359		0.122504	[0.12-0.13] unit increase	Affymetrix [NR] (imputed)	N
1140	chr7	72856268	72856269	rs2240466	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	7q11.23	NR	rs2240466-?	NR	1E-14		0.065078	[0.049-0.082] unit decrease	Illumina [31978265] (imputed)	N
1140	chr7	72856268	72856269	rs2240466	21490707	Cornelis MC	2011-04-07	PLoS Genet	Genome-wide meta-analysis identifies regions on 7p21 (AHR) and 15q24 (CYP1A2) as determinants of habitual caffeine consumption.	Caffeine consumption	47,431 European ancestry individuals	NA	7q11.23	NR	rs2240466-A	0.12	1E-6		0.1109	[0.07-0.15] mg/day increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1140	chr7	72856268	72856269	rs2240466	19060911	Aulchenko YS	2008-12-07	Nat Genet	Loci influencing lipid levels and coronary heart disease risk in 16 European population cohorts.	Triglycerides	17,100 European ancestry individuals, 715 Orcadian individuals	NA	7q11.23	MLXIPL	rs2240466-G	0.87	1E-12		0.14	[NR] s.d. increase	Affymetrix, Illumina [up to 600000]	N
1140	chr7	72856429	72856430	rs1178979	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	7q11.23	NR	rs1178979-?	NR	9E-14		0.03859393	[0.028-0.049] unit decrease	Illumina [31978265] (imputed)	N
1140	chr7	72856429	72856430	rs1178979	28082259	Pankow JS	2017-01-12	Arterioscler Thromb Vasc Biol	Identification of Genetic Variants Linking Protein C and Lipoprotein Metabolism: The ARIC Study (Atherosclerosis Risk in Communities).	Protein C levels	10,778 European ancestry individuals, 2,706 African American individuals	NA	7q11.23	BAZIB	rs1178979-C	0.19	3E-8	(EA)	0.06	[NR] ?g/mL decrease	Affymetrix [at least 22484459] (imputed)	N
1140	chr7	72856429	72856430	rs1178979	20864672	Waterworth DM	2010-09-23	Arterioscler Thromb Vasc Biol	Genetic variants influencing circulating lipid levels and risk of coronary artery disease.	Triglycerides	up to 17,723 European ancestry individuals	up to 37,774 European ancestry individuals, up to 9,665 Indian Asian ancestry individuals	7q11.23	TBL2, MLXIPL, BAZ1B, BCL7B	rs1178979-A	0.80	2E-12		0.05	[0.03-0.07] unit increase	Affymetrix, Illumina, Perlegen [2155369] (imputed)	N
1140	chr7	72857048	72857049	rs1178977	31985003	Boocock J	2020-01-27	Hum Mol Genet	Genomic dissection of 43 serum urate-associated loci provides multiple insights into molecular mechanisms of urate control.	Urate levels	110,238 European ancestry individuals, 21,471 East Asian individuals	NA	7q11.23	BAZ1B	rs1178977-A		5E-14		0.05	[0.036-0.064] mg/dl increase	NR [NR] (imputed)	N
1140	chr7	72857048	72857049	rs1178977	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals	at least 101,293 European ancestry individuals	7q11.23	BAZ1B	rs1178977-A	0.8942	2E-7	(Japanese)	0.0333	[0.021-0.046] unit increase	Illumina [5864938] (imputed)	N
1140	chr7	72857048	72857049	rs1178977	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Triglyceride levels	18,421 East Asian ancestry individuals	38,060 East Asian ancestry individuals	7q11.23	MLXIPL	rs1178977-A	0.89	1E-11	(BMI unadjusted)	0.122	[0.087-0.157] unit increase	Affymetrix, Illumina [~ 2400000] (imputed)	N
1140	chr7	72857048	72857049	rs1178977	23263486	Kottgen A	2012-12-23	Nat Genet	Genome-wide association analyses identify 18 new loci associated with serum urate concentrations.	Urate levels	49,825 European ancestry males, 60,522 European ancestry females	Up to 32,813 European ancestry individuals	7q11.23	MLXIPL, BAZ1B	rs1178977-A	0.81	1E-12		0.047	[0.034-0.06] unit increase	Affymetrix, Illumina, Perlegen [2450547] (imputed)	N
1140	chr7	72857717	72857718	rs202203062	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Migraine	53,109 European ancestry cases, 230,876 European ancestry controls	NA	7q11.23	BAZ1B	rs202203062-?	NR	3E-8		1.061	[1.039-1.083]	Illumina [13763073] (imputed)	N
1140	chr7	72863248	72863249	rs13231516	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	7q11.23	NR	rs13231516-?	NR	6E-15		0.06570173	[0.049-0.082] unit decrease	Illumina [31978265] (imputed)	N
1140	chr7	72863248	72863249	rs13231516	26582766	Lu X	2015-11-18	Circ Cardiovasc Genet	Genetic Susceptibility to Lipid Levels and Lipid Change Over Time and Risk of Incident Hyperlipidemia in Chinese Populations.	Triglycerides	8,344 Han Chinese ancestry individuals	14,739 Han Chinese ancestry individuals	7q11.23	MLXIPL	rs13231516-T	0.87	1E-16		0.03	[0.022-0.038] unit increase	Affymetrix, Illumina [2573667] (imputed)	N
1140	chr7	72864868	72864869	rs714052	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	7q11.23	NR	rs714052-?	NR	5E-15		0.0657629	[0.049-0.082] unit decrease	Illumina [31978265] (imputed)	N
1140	chr7	72864868	72864869	rs714052	20657596	Johansen CT	2010-07-25	Nat Genet	Excess of rare variants in genes identified by genome-wide association study of hypertriglyceridemia.	Hypertriglyceridemia	463 European ancestry cases, 1,197 European ancestry controls	NA	7q11.23	MLXIPL	rs714052-?	0.87	3E-6		2.27	[1.61-3.23]	Affymetrix [~ 2100000] (imputed)	N
1140	chr7	72864868	72864869	rs714052	20139978	Kamatani Y	2010-02-07	Nat Genet	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Triglycerides	8,993 Japanese ancestry individuals	NA	7q11.23	MIXIPL	rs714052-G	0.11	3E-7		0.123	[0.076-0.170] unit decrease	Illumina [561583]	N
1140	chr7	72864868	72864869	rs714052	19060906	Kathiresan S	2008-12-07	Nat Genet	Common variants at 30 loci contribute to polygenic dyslipidemia.	Triglycerides	19,840 European ancestry individuals	Up to 20,623 European ancestry individuals	7q11.23	MLXIPL	rs714052-G	0.12	3E-15		0.16	[0.10-0.22] s.d. decrease	Affymetrix, Illumina [~ 2600000] (imputed)	N
1140	chr7	72870210	72870211	rs35489648	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	7q11.23	BAZ1B	rs35489648-A	NR	5E-9		0.0320906	[0.021-0.043] unit decrease	Affymetrix [319769] (imputed)	N
1140	chr7	72870210	72870211	rs35489648	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	7q11.23	BAZ1B	rs35489648-A	NR	5E-9		0.0320852	[0.021-0.043] unit decrease	Affymetrix [319769] (imputed)	N
1140	chr7	72873419	72873420	rs60982449	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	7q11.23		rs60982449-G	NR	5E-17		0.0246	[0.019-0.03] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1141	chr7	72876444	72876445	rs11972595	31681408	Yang XL	2019-10-11	Front Genet	Three Novel Loci for Infant Head Circumference Identified by a Joint Association Analysis.	Birth weight (MTAG)	up to 182,902 European ancestry individuals	NA	7q11.23	NR	rs11972595-T	0.068	5E-9		0.04409131	[0.029-0.059] unit increase	NR [1977400] (imputed)	N
1141	chr7	72876444	72876445	rs11972595	31097437	Plotnikov D	2019-05-16	Br J Ophthalmol	Association between birth weight and refractive error in adulthood: a Mendelian randomisation study.	Birth weight	188,039 European ancestry individuals	NA	7q11.23	NR	rs11972595-T	0.07	2E-9		0.037	[0.025-0.049] z score increase	Affymetrix [up to 10400000] (imputed)	N
1141	chr7	72877165	72877166	rs2074755	27790247	He L	2016-11-03	Front Genet	Pleiotropic Meta-Analyses of Longitudinal Studies Discover Novel Genetic Variants Associated with Age-Related Diseases.	Age-related diseases, mortality and associated endophenotypes	9,618 European ancestry individuals	19,796 European ancestry individuals	7q11.23	NR	rs2074755-?	NR	1E-17				Affymetrix [NR]	N
1141	chr7	72877165	72877166	rs2074755	27790247	He L	2016-11-03	Front Genet	Pleiotropic Meta-Analyses of Longitudinal Studies Discover Novel Genetic Variants Associated with Age-Related Diseases.	Age-related disease endophenotypes	9,618 European ancestry individuals	19,796 European ancestry individuals	7q11.23	NR	rs2074755-?	NR	3E-40				Affymetrix [NR]	N
1141	chr7	72878043	72878044	rs35797675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	7q11.23		rs35797675-T	0.782765	3E-9		0.0283885	[0.019-0.038] unit decrease	NR [11722792] (imputed)	N
1141	chr7	72878043	72878044	rs35797675	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	7q11.23	BAZ1B	rs35797675-G	NR	1E-9		0.0217383	[0.015-0.029] unit increase	Affymetrix [321788] (imputed)	N
1141	chr7	72878043	72878044	rs35797675	33730874	Said MA	2021-03-18	Arterioscler Thromb Vasc Biol	Genome-Wide Association Study and Identification of a Protective Missense Variant on Lipoprotein(a) Concentration: Protective Missense Variant on Lipoprotein(a) Concentration.	Lipoprotein (a) levels	348,591 European ancestry individuals, 6,000 African ancestry individuals, 9,116 Asian ancestry individuals, 7,505 individuals		7q11.23	BAZ1B	rs35797675-T	NR	2E-10		0.010619	[0.0056-0.0156] nmol/l increase	NR [19000000] (imputed)	N
1141	chr7	72878043	72878044	rs35797675	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Meat-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	7q11.23	FZD9, BAZ1B, BCL7B, TBL2, MLXIPL	rs35797675-?	NR	3E-11		0.0199499	[0.014-0.026] unit increase	Affymetrix [25921788] (imputed)	N
1141	chr7	72878644	72878645	rs12056034	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in IDL	115,082 European ancestry individuals	NA	7q11.23		rs12056034-A	0.874307	9E-10		0.0368929	[0.025-0.049] unit decrease	NR [11722792] (imputed)	N
1141	chr7	72878644	72878645	rs12056034	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large LDL	115,082 European ancestry individuals	NA	7q11.23		rs12056034-A	0.874307	2E-8		0.0343869	[0.022-0.046] unit decrease	NR [11722792] (imputed)	N
1141	chr7	72878644	72878645	rs12056034	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in IDL	115,082 European ancestry individuals	NA	7q11.23		rs12056034-A	0.874307	2E-19		0.0543271	[0.043-0.066] unit decrease	NR [11722792] (imputed)	N
1141	chr7	72878644	72878645	rs12056034	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Degree of unsaturation	115,006 European ancestry individuals	NA	7q11.23		rs12056034-A	0.874315	2E-9		0.03557	[0.024-0.047] unit decrease	NR [11722792] (imputed)	N
1141	chr7	72878644	72878645	rs12056034	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of IDL particles	115,082 European ancestry individuals	NA	7q11.23		rs12056034-A	0.874307	5E-10		0.038274	[0.026-0.05] unit decrease	NR [11722792] (imputed)	N
1141	chr7	72878644	72878645	rs12056034	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very small VLDL	115,082 European ancestry individuals	NA	7q11.23		rs12056034-A	0.874307	3E-12		0.0419729	[0.03-0.054] unit decrease	NR [11722792] (imputed)	N
1141	chr7	72878644	72878645	rs12056034	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in IDL	115,082 European ancestry individuals	NA	7q11.23		rs12056034-A	0.874307	2E-15		0.047843	[0.036-0.06] unit decrease	NR [11722792] (imputed)	N
1141	chr7	72878644	72878645	rs12056034	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in IDL	115,082 European ancestry individuals	NA	7q11.23		rs12056034-A	0.874307	1E-16		0.0497916	[0.038-0.062] unit decrease	NR [11722792] (imputed)	N
1141	chr7	72878644	72878645	rs12056034	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	7q11.23	BAZ1B	rs12056034-G	0.124373	2E-13		0.025006246	[0.018-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
1141	chr7	72878644	72878645	rs12056034	31589552	Lind L	2019-10-07	Metab Syndr Relat Disord	Genome-Wide Association Study of the Metabolic Syndrome in UK Biobank.	Metabolic syndrome	291,107 European ancestry individuals	NA	7q11.23	BAZ1B	rs12056034-G	0.124753	8E-22		0.0968365	[0.077-0.117] unit increase	Affymetrix [9463307] (imputed)	N
1141	chr7	72881806	72881807	rs71556715	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q11.23	NR	rs71556715-T	0.119478	1E-17				Affymetrix, Illumina [24588908] (imputed)	N
1141	chr7	72881806	72881807	rs71556715	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x short total sleep time interaction (2df test)	2,990 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,300 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, at least 11,842 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,350 European ancestry controls, 4,047 Hispanic/Latino controls	at least 220 African American short sleepers, 326 East Asian ancestry short sleepers, up to 5,288 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 1,292 East Asian ancestry controls, up to 20,844 European ancestry controls, 10,062 Hispanic controls	7q11.23	TYW1B	rs71556715-?	NR	1E-56		0.04563	[0.039-0.052] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
1141	chr7	72885809	72885810	rs6976930	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	7q11.23	PMS2P5	rs6976930-G	0.8132	8E-7	(EA, women)	0.0326	[0.02-0.046] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1141	chr7	72885809	72885810	rs6976930	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	7q11.23	BAZ1B	rs6976930-G	0.8132	1E-8	(EA)	0.0294	[0.019-0.039] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1141	chr7	72885809	72885810	rs6976930	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	7q11.23	PMS2P5	rs6976930-G	0.8132	4E-8	(EA)	0.0319	[0.021-0.043] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1141	chr7	72885809	72885810	rs6976930	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	7q11.23	PMS2P5	rs6976930-G	0.8132	3E-6	(EA, women)	0.0351	[0.02-0.05] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1141	chr7	72885809	72885810	rs6976930	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	7q11.23	PMS2P5	rs6976930-?	0.8132	2E-6	(EA, women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1141	chr7	72885809	72885810	rs6976930	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	7q11.23	BAZ1B	rs6976930-?	0.8132	2E-8	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1141	chr7	72890240	72890241	rs181981038	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	7q11.23	BAZ1B	rs181981038-A	NR	5E-12		0.0392727	[0.028-0.05] unit increase	Affymetrix [319769] (imputed)	N
1141	chr7	72890240	72890241	rs181981038	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	7q11.23	BAZ1B	rs181981038-A	NR	6E-12		0.0392186	[0.028-0.05] unit increase	Affymetrix [319769] (imputed)	N
1141	chr7	72890475	72890476	rs60202902	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7q11.23	NR	rs60202902-C	0.01045	3E-9	(ACSM2B)	1.699	NR unit increase	Illumina [1671387] (imputed)	N
1141	chr7	72890475	72890476	rs60202902	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7q11.23	NR	rs60202902-C	0.01045	1E-8	(HIBADH)	0.3596	NR unit increase	Illumina [1671387] (imputed)	N
1141	chr7	72892516	72892517	rs200548390	29124443	Yasukochi Y	2017-11-09	Mol Genet Genomics	Identification of CDC42BPG as a novel susceptibility locus for hyperuricemia in a Japanese population.	Hyperuricemia	847 Japanese ancestry cases, 4,640 Japanese ancestry controls	972 Japanese ancestry cases, 4,584 Japanese ancestry controls	7q11.23	BAZ1B	rs200548390-?	3.99042E-4	2E-16				Illumina [~ 244000]	N
1141	chr7	72897235	72897236	rs117528284	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	7q11.23	NR	rs117528284-A	NR	5E-9		0.0373	[0.025-0.05] unit increase	Affymetrix [9000000] (imputed)	N
1141	chr7	72904809	72904810	rs17145713	20802025	Tang W	2010-08-27	Blood	Genome-wide association study identifies novel loci for plasma levels of protein C: the ARIC study.	Protein C levels	8,048 European ancestry individuals	1,376 European ancestry individuals	7q11.23	BAZ1B	rs17145713-T	0.20	3E-8		0.06	[0.04-0.08] ug/ml decrease	Affymetrix [2461269]	N
1141	chr7	72907458	72907459	rs111837003	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Serum alkaline phosphatase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	7q11.23	BAZ1B	rs111837003-?		1E-10		0.0409	[0.028-0.053] unit increase	Illumina [31500000] (imputed)	N
1141	chr7	72907458	72907459	rs111837003	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x long total sleep time interaction (2df test)	at least 2,926 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, at least 7,664 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,906 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 31,986 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 317 East Asian ancestry long sleepers, up to 5,171 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 928 African American controls, 1,301 East Asian ancestry controls, up to 20,961 European ancestry controls, 10,064 Hispanic controls	7q11.23	TYW1B	rs111837003-?	NR	2E-57		0.04655	[0.04-0.053] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
1141	chr7	72911842	72911843	rs13244268	27286809	Ligthart S	2016-06-10	BMC Genomics	Bivariate genome-wide association study identifies novel pleiotropic loci for lipids and inflammation.	C-reactive protein levels or HDL-cholesterol levels (pleiotropy)	65,000 individuals (C-reactive protein), 99,900 individuals (HDL-cholesterol)	NA	7q11.23	BAZ1B	rs13244268-T	NR	1E-13				NR [2501543] (imputed)	N
1141	chr7	72913167	72913168	rs2353082	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x long total sleep time interaction (2df test)	at least 2,926 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, at least 7,664 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,906 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 31,986 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 317 East Asian ancestry long sleepers, up to 5,171 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 928 African American controls, 1,301 East Asian ancestry controls, up to 20,961 European ancestry controls, 10,064 Hispanic controls	7q11.23	TYW1B	rs2353082-?	NR	8E-11		0.01972	[0.013-0.027] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
1141	chr7	72915520	72915521	rs34482346	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	7q11.23	NR	rs34482346-C	0.122134	7E-19		0.024743	[0.019-0.03] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1141	chr7	72921770	72921771	rs117788606	33760818	Francis M	2021-03-24	PLoS Genet	Genome-wide association study of fish oil supplementation on lipid traits in 81,246 individuals reveals new gene-diet interaction loci.	Triglyceride levels x fish oil supplementation interaction (2df)	73,908 European ancestry individuals	7,284 European ancestry individuals	7q11.23	BAZ1B	rs117788606-C	0.012	4E-16				Affymetrix [7953600] (imputed)	N
1141	chr7	72924063	72924064	rs113296769	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	7q11.23	NR	rs113296769-G	NR	5E-36		0.1085	[0.091-0.126] unit decrease	Affymetrix [9000000] (imputed)	N
1141	chr7	72924063	72924064	rs113296769	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	7q11.23	NR	rs113296769-G	NR	1E-11		0.0589	[0.042-0.076] unit decrease	Affymetrix [9000000] (imputed)	N
1141	chr7	72929607	72929608	rs17145717	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	7q11.23	BAZ1B	rs17145717-A	NR	1E-10		0.038264	[0.027-0.05] unit decrease	Affymetrix [321788] (imputed)	N
1141	chr7	72929607	72929608	rs17145717	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	7q11.23	NR	rs17145717-?	NR	2E-14				Affymetrix [~ 8270000] (imputed)	N
1141	chr7	72934509	72934510	rs7811265	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7q11.23	NR	rs7811265-A	NR	6E-105		0.106	unit increase	Affymetrix [at least 7091467] (imputed)	N
1141	chr7	72934509	72934510	rs7811265	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7q11.23	NR	rs7811265-A	0.905	3E-6	(East Asian)	0.116	unit increase	Affymetrix [at least 7091467] (imputed)	N
1141	chr7	72934509	72934510	rs7811265	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7q11.23	NR	rs7811265-A	0.854	1E-7	(Hispanic)	0.104	unit increase	Affymetrix [at least 7091467] (imputed)	N
1141	chr7	72934509	72934510	rs7811265	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7q11.23	NR	rs7811265-A	0.809	1E-96	(EA)	0.11	unit increase	Affymetrix [at least 7091467] (imputed)	N
1141	chr7	72934509	72934510	rs7811265	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7q11.23	NR	rs7811265-A	NR	4E-12		0.031	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1141	chr7	72934509	72934510	rs7811265	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7q11.23	NR	rs7811265-A	0.809	1E-12	(EA)	0.034	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1141	chr7	72939938	72939939	rs80189144	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	7q11.23	NR	rs80189144-C	0.123296	2E-10		0.0940129	[0.065-0.123] unit increase	Affymetrix [21375087] (imputed)	N
1141	chr7	72951215	72951216	rs188982745	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Estradiol levels	206,927 European ancestry men	NA	7q11.23	NR	rs188982745-A	0.002970000000000028	1E-8		0.0553198	[0.036-0.074] unit increase	Affymetrix [16582268] (imputed)	N
1141	chr7	72971230	72971231	rs13233571	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	up to 92,771 European ancestry males, up to 113,387 European ancestry females	NA	7q11.23	BCL7B	rs13233571-C	0.12	3E-25		0.057	[0.047-0.067] unit increase	Affymetrix, Illumina, Perlegen [2437193] (imputed)	N
1141	chr7	72971230	72971231	rs13233571	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	HDL cholesterol levels	34,930 East Asian ancestry individuals, 187,167 European ancestry individuals	8,741 Chinese ancestry individuals	7q11.23	MLXIPL	rs13233571-T	0.119	5E-13	(Trans-ethnic initial)	0.0398	[0.03-0.05] unit increase (EA Beta values)	Affymetrix, Illumina [~ 1900000] (imputed)	N
1141	chr7	72971230	72971231	rs13233571	21300955	Dehghan A	2011-02-07	Circulation	Meta-analysis of genome-wide association studies in >80 000 subjects identifies multiple loci for C-reactive protein levels.	C-reactive protein levels	63,678 European ancestry individuals 1,792 Erasmus Rucphen individuals, 715 Orcadian individuals	16,540 European ancestry individuals	7q11.23	BCL7B	rs13233571-C	NR	4E-9		0.054	[0.03-0.07] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1141	chr7	72975701	72975702	rs111269058	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	148,164 European ancestry individuals	NA	7q11.23	BCL7B	rs111269058-T	0.12	3E-19	(BMI-adjusted)	0.054	[0.042-0.066] unit decrease	Affymetrix, Illumina, Perlegen [10019203] (imputed)	N
1141	chr7	72976017	72976018	rs13225333	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q11.23	NR	rs13225333-C	0.720764	5E-11				Affymetrix, Illumina [22063850] (imputed)	N
1141	chr7	72976047	72976048	rs13225347	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	7q11.23	BCL7B	rs13225347-C	0.718122	2E-33		0.00304909	[0.0025-0.0036] unit increase	Affymetrix [13995440] (imputed)	N
1141	chr7	72977248	72977249	rs34594435	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	7q11.23	BCL7B	rs34594435-T	0.196023	6E-10		0.017277393	[0.012-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1141	chr7	72977248	72977249	rs34594435	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	7q11.23	BCL7B, TBL2	rs34594435-C		1E-9		0.183	unit increase	Affymetrix [at least 2696785] (imputed)	N
1141	chr7	72977557	72977557	rs201887154	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	7q11.23	BCL7B	rs201887154-CG	NR	2E-8		0.0305464	[0.02-0.041] unit decrease	Affymetrix [319769] (imputed)	N
1141	chr7	72977897	72977898	rs12539316	21909109	Kim YJ	2011-09-11	Nat Genet	Large-scale genome-wide association studies in East Asians identify new genetic loci influencing metabolic traits.	Gamma glutamyl transpeptidase	12,545 Korean ancestry individuals	Up to 30,395 East Asian ancestry individuals	7q11.23	TBL2	rs12539316-C	0.10	6E-10		0.0051	[0.0035-0.0067] IU/L increase	Affymetrix [~ 2200000] (imputed)	N
1141	chr7	72982873	72982874	rs17145738	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	72,866 East Asian ancestry individuals	NA	7q11.23		rs17145738-T	0.104328	1E-8		0.0447168	[0.029-0.06] unit increase	Illumina [13461863] (imputed)	N
1141	chr7	72982873	72982874	rs17145738	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	High density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	7q11.23	TBL2	rs17145738-?		2E-16		0.0547	[0.042-0.068] unit decrease	Illumina [31500000] (imputed)	N
1141	chr7	72982873	72982874	rs17145738	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	7q11.23	TBL2	rs17145738-T	0.1043	5E-11	(East Asian)	0.0617	[0.043-0.08] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1141	chr7	72982873	72982874	rs17145738	31566214	Kulminski AM	2019-09-30	J Gerontol A Biol Sci Med Sci	Quantitative and qualitative role of antagonistic heterogeneity in genetics of blood lipids.	Triglyceride levels	29,902 European ancestry individuals	NA	7q11.23		rs17145738-T	0.12	2E-33		10.97	[9.19-12.75] unit decrease	Affymetrix, Illumina [up to 2500000] (imputed)	N
1141	chr7	72982873	72982874	rs17145738	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	7q11.23	NR	rs17145738-?	NR	5E-15		0.05707509	[0.043-0.071] unit decrease	Illumina [31978265] (imputed)	N
1141	chr7	72982873	72982874	rs17145738	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	Triglyceride levels	up to 23,508 African ancestry individuals, 4,649 Asian ancestry individuals, up to 77,047 European ancestry individuals, 6,705 Hispanic individuals	NA	7q11.23		rs17145738-T	0.1163	8E-41		0.0481	[0.041-0.055] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1141	chr7	72982873	72982874	rs17145738	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	HDL cholesterol levels	up to 23,761 African ancestry individuals, 13,171 Asian ancestry individuals, up to 90,272 European ancestry individuals, 6,620 Hispanic individuals	NA	7q11.23		rs17145738-T	0.126	6E-8	(EA)	0.0108	[0.0069-0.0147] unit increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1141	chr7	72982873	72982874	rs17145738	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7q11.23	NR	rs17145738-C	NR	2E-116		0.135	unit increase	Affymetrix [at least 7091467] (imputed)	N
1141	chr7	72982873	72982874	rs17145738	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7q11.23	NR	rs17145738-C	0.913	8E-10	(Hispanic)	0.15	unit increase	Affymetrix [at least 7091467] (imputed)	N
1141	chr7	72982873	72982874	rs17145738	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7q11.23	NR	rs17145738-C	0.908	3E-7	(East Asian)	0.13	unit increase	Affymetrix [at least 7091467] (imputed)	N
1141	chr7	72982873	72982874	rs17145738	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7q11.23	NR	rs17145738-C	0.88	1E-99	(EA)	0.135	unit increase	Affymetrix [at least 7091467] (imputed)	N
1141	chr7	72982873	72982874	rs17145738	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7q11.23	NR	rs17145738-C	NR	8E-11		0.035	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1141	chr7	72982873	72982874	rs17145738	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7q11.23	NR	rs17145738-C	0.88	9E-10	(EA)	0.035	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1141	chr7	72982873	72982874	rs17145738	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Low density lipoprotein cholesterol levels	72,866 Japanese ancestry individuals	NA	7q11.23	TBL2	rs17145738-?	NR	5E-9		0.04998	[0.033-0.067] unit increase novel	Illumina [6108953] (imputed)	N
1141	chr7	72982873	72982874	rs17145738	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Triglyceride levels	28,183 East Asian ancestry individuals, 177,861 European ancestry individuals	10,857 Chinese ancestry individuals	7q11.23	MLXIPL	rs17145738-T	0.117	2E-110	(Trans-ethnic initial)	0.115	[0.1-0.13] unit decrease (EA Beta values)	Affymetrix, Illumina [up to 1900000] (imputed)	N
1141	chr7	72982873	72982874	rs17145738	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Triglyceride levels	28,183 East Asian ancestry individuals, 177,861 European ancestry individuals	10,857 Chinese ancestry individuals	7q11.23	MLXIPL	rs17145738-T	0.11	7E-17	(Asian initial, BMI unadjusted)	0.117	[0.09-0.144] unit decrease	Affymetrix, Illumina [up to 1900000] (imputed)	N
1141	chr7	72982873	72982874	rs17145738	27599772	Ram R	2016-09-07	Clin Genet	A common variant association study in ethnic Saudi Arabs reveals novel susceptibility loci for hypertriglyceridemia.	Hypertriglyceridemia	927 Saudi Arabian ancestry cases, 3,159 Saudi Arabian ancestry controls	317 Saudi Arabian ancestry cases, 1,098 Saudi Arabian ancestry controls	7q11.23	TBL2, MLXIPL	rs17145738-C	NR	2E-13		1.82	[1.41-2.38]	Affymetrix [~ 8000000] (imputed)	N
1141	chr7	72982873	72982874	rs17145738	26690388	Tang CS	2015-12-22	Nat Commun	Exome-wide association analysis reveals novel coding sequence variants associated with lipid traits in Chinese.	Total triglycerides levels	12,685 Chinese ancestry individuals	NA	7q11.23	MLXIPL	rs17145738-T	0.111	9E-8		0.109	[0.07-0.148] unit decrease	Illumina [286795]	N
1141	chr7	72982873	72982874	rs17145738	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Triglycerides	94,595 European ancestry individuals	93,982 European ancestry individuals	7q11.23	MLXIPL	rs17145738-T	0.13	9E-99		0.115	[NR] mg/dL decrease	NR [NR] (imputed)	N
1141	chr7	72982873	72982874	rs17145738	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	7q11.23	MLXIPL	rs17145738-T	0.13	5E-13		0.041	[NR] unit increase	NR [NR] (imputed)	N
1141	chr7	72982873	72982874	rs17145738	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	Triglycerides	96,598 European ancestry individuals	NA	7q11.23	MLXIPL	rs17145738-G	0.19	9E-59		7.91	[6.93-8.89] mg/dL decrease	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1141	chr7	72982873	72982874	rs17145738	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	HDL cholesterol	99,900 European ancestry individuals	NA	7q11.23	MLXIPL	rs17145738-T	0.12	1E-9		0.57	[0.33-0.81] mg/dL increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1141	chr7	72982873	72982874	rs17145738	18193044	Kathiresan S	2008-01-13	Nat Genet	Six new loci associated with blood low-density lipoprotein cholesterol, high-density lipoprotein cholesterol or triglycerides in humans.	Triglycerides	2,758 European ancestry individuals	18,554 European ancestry individuals	7q11.23	TBL2, MLXIPL, BCL7B	rs17145738-T	0.13	7E-22		0.14	[0.25-0.53] unit decrease	Affymetrix [389878]	N
1141	chr7	72982873	72982874	rs17145738	18193043	Willer CJ	2008-01-13	Nat Genet	Newly identified loci that influence lipid concentrations and risk of coronary artery disease.	Triglycerides	8,684 European ancestry individuals	9,741 European ancestry individuals	7q11.23	MLXIPL	rs17145738-C	0.84	2E-12		8.21	[NR] mg/dl increase	Affymetrix, Illumina [~ 2261000] (imputed)	N
1141	chr7	72984779	72984780	rs14415	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	7q11.23		rs14415-C	0.104632	2E-8		0.0328738	[0.021-0.044] unit increase	Illumina [13476266] (imputed)	N
1141	chr7	72987353	72987354	rs2286276	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_48:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	7q11.23		rs2286276-T	NR	1E-10		0.106857	[0.074-0.139] unit increase	Affymetrix [87696910] (imputed)	N
1141	chr7	72987353	72987354	rs2286276	33832965	Sandoval-Plata G	2021-04-08	Ann Rheum Dis	Variants in urate transporters, ADH1B, GCKR and MEPE genes associate with transition from asymptomatic hyperuricaemia to gout: results of the first gout versus asymptomatic hyperuricaemia GWAS in Caucasians using data from the UK Biobank.	Gout	7,049 European ancestry cases, 64,424 European ancestry controls	NA	7q11.23	TBL2	rs2286276-T	0.28	2E-13		0.85	[0.82-0.89]	Affymetrix [710030]	N
1141	chr7	72987353	72987354	rs2286276	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	7q11.23	NR	rs2286276-?	NR	3E-18		0.04166307	[0.032-0.051] unit decrease	Illumina [31978265] (imputed)	N
1141	chr7	72987353	72987354	rs2286276	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	7q11.23	NR	rs2286276-?	NR	3E-6		1.97447	[1.15-2.8] unit decrease	Illumina [32003504] (imputed)	N
1141	chr7	72987353	72987354	rs2286276	23505323	Weissglas-Volkov D	2013-03-15	J Med Genet	Genomic study in Mexicans identifies a new locus for triglycerides and refines European lipid loci.	Hypertriglyceridemia	1,122 Mexican ancestry cases, 1,118 Mexican ancestry controls	1,067 Mexican ancestry cases, 1,054 Mexican ancestry controls	7q11.23	TBL2, VPS37D, MLXIPL, BAZ1B, BCL7B	rs2286276-?	0.88	2E-6		1.39	[1.25-1.53]	Illumina [1361436] (imputed)	N
1141	chr7	72987353	72987354	rs2286276	21909109	Kim YJ	2011-09-11	Nat Genet	Large-scale genome-wide association studies in East Asians identify new genetic loci influencing metabolic traits.	Triglycerides	12,545 Korean ancestry individuals	Up to 30,395 East Asian ancestry individuals	7q11.23	TBL2, MLXIPL	rs2286276-T	0.10	1E-15		0.0652	[0.049-0.081] mg/dL decrease	Affymetrix [~ 2200000] (imputed)	N
1141	chr7	72988068	72988069	rs35659126	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	7q11.23	NR	rs35659126-C	0.805607	1E-12		0.016827	[0.012-0.021] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
1141	chr7	72991591	72991592	rs35624969	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Low density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	7q11.23	TBL2	rs35624969-?		3E-8		0.0511	[0.033-0.069] unit increase	Illumina [31500000] (imputed)	N
1141	chr7	72991592	72991593	rs35348663	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Meat-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	7q11.23	FZD9, BAZ1B, BCL7B, TBL2, MLXIPL	rs35348663-?	NR	4E-8	(female)	0.0203016	[0.013-0.028] unit increase	Affymetrix [25921788] (imputed)	N
1141	chr7	72991703	72991704	rs12540011	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	7q11.23	TBL2	rs12540011-A	0.2835	3E-22		0.0203	[0.016-0.024] unit increase	Affymetrix [18391927] (imputed)	N
1141	chr7	72991703	72991704	rs12540011	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q11.23	NR	rs12540011-A	0.248356	9E-12				Affymetrix, Illumina [24246363] (imputed)	N
1141	chr7	72994475	72994476	rs12666883	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	7q11.23	TBL2	rs12666883-A	0.033	6E-6	(IGFBP-3 )	0.03	[NR] ng/mL increase	Illumina [899892]	N
1141	chr7	72999104	72999105	rs9638182	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	7q11.23	NR	rs9638182-?	NR	9E-18		0.05202286	[0.04-0.064] unit decrease	Illumina [31978265] (imputed)	N
1141	chr7	72999104	72999105	rs9638182	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7q11.23	NR	rs9638182-T	NR	1E-110		0.114	unit increase	Affymetrix [at least 7091467] (imputed)	N
1141	chr7	72999104	72999105	rs9638182	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7q11.23	NR	rs9638182-T	0.906	6E-7	(East Asian)	0.127	unit increase	Affymetrix [at least 7091467] (imputed)	N
1141	chr7	72999104	72999105	rs9638182	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7q11.23	NR	rs9638182-T	0.869	5E-9	(Hispanic)	0.12	unit increase	Affymetrix [at least 7091467] (imputed)	N
1141	chr7	72999104	72999105	rs9638182	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7q11.23	NR	rs9638182-T	0.821	2E-96	(EA)	0.114	unit increase	Affymetrix [at least 7091467] (imputed)	N
1141	chr7	72999104	72999105	rs9638182	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7q11.23	NR	rs9638182-T	NR	1E-12		0.033	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1141	chr7	72999104	72999105	rs9638182	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7q11.23	NR	rs9638182-T	0.821	1E-12	(EA)	0.035	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1141	chr7	72999104	72999105	rs9638182	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	Triglycerides	up to 62,166 European ancestry individuals	NA	7q11.23	MLXIPL	rs9638182-T	0.81	1E-40		0.1	[0.084-0.116] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
1141	chr7	72999170	72999171	rs35709627	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	7q11.23	NR	rs35709627-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
1141	chr7	73001020	73001021	rs35173225	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	7q11.23	TBL2, MLXIPL	rs35173225-T	0.12	7E-16		8.06	z-score increase	Affymetrix [4312306] (imputed)	N
1141	chr7	73001020	73001021	rs35173225	30670697	Kilpelainen TO	2019-01-22	Nat Commun	Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity.	Triglycerides x physical activity interaction (2df test)	7,294 African American inactive individuals, 12,832 African American active individuals, 1,352 Asian ancestry inactive individuals, 3,049 Asian ancestry active individuals, 20,622 European ancestry inactive individuals, 51,480 European ancestry active individuals, 2,166 Hispanic or Latin American inactive individuals, 3,486 Hispanic or Latin American active individuals	580 African American inactive individuals, 1,540 African American active individuals, 1,217 South African Black ancestry inactive individuals, 389 South African Black ancestry active individuals, 765 East Asian ancestry inactive individuals, 1,814 East Asian ancestry active individuals,  724 South Asian ancestry inactive individuals, 1,424 South Asian ancestry active individuals, 32,456 European ancestry inactive individuals, 49,510 European ancestry active individuals, 2,619 Hispanic inactive individuals, 8,803 Hispanic active individuals	7q11.23	NR	rs35173225-T	0.108	1E-137				Affymetrix, Illumina [at least 2500000] (imputed)	N
1141	chr7	73003717	73003718	rs183867209	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	7q11.23	MLXIPL	rs183867209-C	NR	1E-8		0.0330726	[0.022-0.044] unit increase	Affymetrix [321788] (imputed)	N
1141	chr7	73003717	73003718	rs183867209	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	7q11.23	MLXIPL	rs183867209-C	NR	7E-9		0.0321469	[0.021-0.043] unit increase	Affymetrix [321016] (imputed)	N
1141	chr7	73004314	73004315	rs145099458	34719683	Park JS	2021-11-01	J Hum Genet	Genome-wide meta-analysis revealed several genetic loci associated with serum uric acid levels in Korean population: an analysis of Korea Biobank data.	Serum uric acid levels	60,585 Korean ancestry individuals	NA	7q11.23		rs145099458-T	0.09	3E-9				NR [7104359] (imputed)	N
1141	chr7	73005775	73005776	rs35866503	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	7q11.23		rs35866503-T	NR	9E-16		0.0212	[0.016-0.026] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1141	chr7	73005775	73005776	rs35866503	30642921	de Vries PS	2019-01-14	Blood	A genome-wide association study identifies new loci for factor VII and implicates factor VII in ischemic stroke etiology.	Factor VII activity	20,014 European ancestry individuals, 3,420 African American individuals	NA	7q11.23	MLXIPL	rs35866503-C	0.82	6E-8		0.015	[0.0091-0.0209] unit increase	Affymetrix, Illumina [10044948] (imputed)	N
1141	chr7	73006387	73006388	rs13225660	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Gamma glutamyl transferase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	7q11.23	TBL2, MLXIPL	rs13225660-?		2E-21		0.0604	[0.048-0.073] unit increase	Illumina [31500000] (imputed)	N
1141	chr7	73006682	73006683	rs190736168	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TBL2	5,363 Icelandic ancestry individuals	NA	7q11.23		rs190736168-T	0.03899	1E-24		0.488385	[0.4-0.58] unit increase	Illumina [7506463] (imputed)	N
1142	chr7	73007942	73007943	rs1051921	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_32:1_[M+H]1+/Phosphatidylcholine-P_32:0_[M+H]1+/Phosphatidylethanolamine-O_35:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	7q11.23		rs1051921-A	NR	3E-10		0.0939669	[0.065-0.123] unit increase	Affymetrix [87696910] (imputed)	N
1142	chr7	73007942	73007943	rs1051921	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_34:2_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	7q11.23		rs1051921-A	NR	4E-10		0.0824753	[0.057-0.108] unit decrease	Affymetrix [87696910] (imputed)	N
1142	chr7	73007942	73007943	rs1051921	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	7q11.23	NR	rs1051921-A	0.2	8E-55		0.0356	[0.031-0.04] unit decrease	NR [NR]	N
1142	chr7	73007942	73007943	rs1051921	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	7q11.23	MLXIPL	rs1051921-A	0.1675	3E-34		0.0514	[0.043-0.06] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1142	chr7	73007942	73007943	rs1051921	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	7q11.23	NR	rs1051921-A	0.1683	2E-17	(women)	0.0518	[0.04-0.064] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1142	chr7	73007942	73007943	rs1051921	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	7q11.23	NR	rs1051921-A	0.1613	7E-14	(men)	0.0515	[0.038-0.065] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1142	chr7	73007942	73007943	rs1051921	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals, at least 88,461 European ancestry individuals	NA	7q11.23	MLXIPL	rs1051921-A	0.2	4E-12	(EA)	0.034285713	[0.025-0.044] unit decrease	Illumina [1986983] (imputed)	N
1142	chr7	73007942	73007943	rs1051921	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals, at least 88,461 European ancestry individuals	NA	7q11.23	MLXIPL	rs1051921-A	0.0994	2E-8	(Japanese)	0.037	[0.024-0.05] unit decrease	Illumina [1986983] (imputed)	N
1142	chr7	73007942	73007943	rs1051921	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	7q11.23	NR	rs1051921-G	0.8	4E-25		0.023	[0.019-0.027] unit increase	Affymetrix [2446094] (imputed)	N
1142	chr7	73007942	73007943	rs1051921	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	7q11.23	NR	rs1051921-G	0.8	5E-8				Affymetrix [2446094] (imputed)	N
1142	chr7	73010441	73010442	rs13247874	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	7q11.23		rs13247874-T	NR	2E-49		0.0345	[0.03-0.039] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
1142	chr7	73010441	73010442	rs13247874	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	7q11.23	MLXIPL	rs13247874-C	0.80285	2E-16		0.0215194	[0.016-0.027] unit increase	Affymetrix [NR] (imputed)	N
1142	chr7	73010441	73010442	rs13247874	22286219	Kettunen J	2012-01-29	Nat Genet	Genome-wide association study identifies multiple loci influencing human serum metabolite levels.	Lipid metabolism phenotypes	8,330 European ancestry individuals	NA	7q11.23	MLXIPL	rs13247874-?	NR	8E-14	(VLDL-D)	0.16	[0.12-0.2] unit decrease	Illumina [~ 7700000] (imputed)	N
1142	chr7	73012041	73012042	rs35332062	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:0_[M+H]1+/Phosphatidylethanolamine_35:0_[M+H]1+/Phosphatidate_37:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	7q11.23		rs35332062-A	NR	9E-11		0.113927	[0.079-0.148] unit increase	Affymetrix [87696910] (imputed)	N
1142	chr7	73012041	73012042	rs35332062	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	7q11.23	NR	rs35332062-A	0.127219	4E-8		0.0566642	[0.037-0.077] unit increase	Affymetrix [17914406] (imputed)	N
1142	chr7	73012041	73012042	rs35332062	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	7q11.23	MLXIPL	rs35332062-?	NR	8E-11	(M_VLDL_L)	0.07682711	NR unit decrease	Illumina [609262]	N
1142	chr7	73012041	73012042	rs35332062	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	7q11.23	MLXIPL	rs35332062-?	NR	2E-8	(S_VLDL_TG)	0.05183762	NR unit decrease	Illumina [609262]	N
1142	chr7	73012041	73012042	rs35332062	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	7q11.23	MLXIPL	rs35332062-?	NR	8E-10	(S_VLDL_TG)	0.07693043	NR unit decrease	Illumina [609262]	N
1142	chr7	73012041	73012042	rs35332062	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	7q11.23	MLXIPL	rs35332062-?	NR	3E-6	(M_VLDL_L)	0.068529435	NR unit decrease	Illumina [609262]	N
1142	chr7	73012041	73012042	rs35332062	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 157,516 European ancestry women, up to 180,131 African American, South Asian, East Asian and Hispanic ancestry women	up to 62,368 European ancestry women	7q11.23	MLXIPL	rs35332062-G	0.8791	8E-8		0.0255	[0.016-0.035] unit increase	Affymetrix, Illumina [at least 228985]	N
1142	chr7	73012041	73012042	rs35332062	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 157,516 European ancestry women	up to 62,368 European ancestry women	7q11.23	MLXIPL	rs35332062-G	0.876	8E-8		0.0264	[0.017-0.036] unit increase	Affymetrix, Illumina [at least 228985]	N
1142	chr7	73012041	73012042	rs35332062	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	288,492 European ancestry individuals, up to 15,687 African American individuals, up to 29,315 South Asian ancestry individuals, up to 6,800 East Asian ancestry individuals, up to 4,075 Hispanic ancestry individuals	132,177 European ancestry individuals	7q11.23	MLXIPL	rs35332062-G	0.8797	2E-9		0.02	[0.014-0.026] unit increase	Affymetrix, Illumina [at least 228985]	N
1142	chr7	73012041	73012042	rs35332062	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	288,492 European ancestry individuals	132,177 European ancestry individuals	7q11.23	MLXIPL	rs35332062-G	0.8759	2E-9		0.0207	[0.014-0.028] unit increase	Affymetrix, Illumina [at least 228985]	N
1142	chr7	73012041	73012042	rs35332062	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	7q11.23	NR	rs35332062-?	NR	7E-11	(female)	0.23482	[0.16-0.31] unit increase	Affymetrix [7794483] (imputed)	N
1142	chr7	73012041	73012042	rs35332062	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	7q11.23	NR	rs35332062-?	NR	3E-12		0.22857	[0.16-0.29] unit increase	Affymetrix [7794483] (imputed)	N
1142	chr7	73012784	73012785	rs79624003	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small HDL	115,082 European ancestry individuals	NA	7q11.23		rs79624003-A	0.870149	2E-28		0.0665509	[0.055-0.078] unit increase	NR [11722792] (imputed)	N
1142	chr7	73012784	73012785	rs79624003	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	7q11.23		rs79624003-G	NR	4E-31		0.0354	[0.03-0.041] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
1142	chr7	73012784	73012785	rs79624003	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	7q11.23	MLXIPL	rs79624003-G	0.128736	4E-31		0.038340874	[0.032-0.045] unit increase	Affymetrix [93095623] (imputed)	N
1142	chr7	73012784	73012785	rs79624003	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	7q11.23	MLXIPL	rs79624003-G	NR	5E-6	(AA)			Affymetrix, Illumina [NR] (imputed)	N
1142	chr7	73012784	73012785	rs79624003	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	7q11.23	MLXIPL	rs79624003-G	NR	5E-136	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1142	chr7	73012784	73012785	rs79624003	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	7q11.23	MLXIPL	rs79624003-G	NR	4E-200				Affymetrix, Illumina [NR] (imputed)	N
1142	chr7	73012784	73012785	rs79624003	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	7q11.23	MLXIPL	rs79624003-G	NR	2E-57	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
1142	chr7	73012784	73012785	rs79624003	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	7q11.23	MLXIPL	rs79624003-G	NR	2E-13	(Hispanic)			Affymetrix, Illumina [NR] (imputed)	N
1142	chr7	73012784	73012785	rs79624003	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	7q11.23	MLXIPL	rs79624003-G	NR	9E-203				Affymetrix, Illumina [NR] (imputed)	N
1142	chr7	73012784	73012785	rs79624003	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	7q11.23	MLXIPL	rs79624003-G	NR	8E-134	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1142	chr7	73012784	73012785	rs79624003	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	7q11.23	MLXIPL	rs79624003-G	NR	5E-10	(AA)			Affymetrix, Illumina [NR] (imputed)	N
1142	chr7	73012784	73012785	rs79624003	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	7q11.23	MLXIPL	rs79624003-G	NR	4E-56	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
1142	chr7	73012784	73012785	rs79624003	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	7q11.23	MLXIPL	rs79624003-G	NR	4E-13	(Hispanic)			Affymetrix, Illumina [NR] (imputed)	N
1142	chr7	73012784	73012785	rs79624003	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	7q11.23	MLXIPL	rs79624003-G	NR	4E-47	(Asian)	0.062	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1142	chr7	73012784	73012785	rs79624003	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	7q11.23	MLXIPL	rs79624003-G	NR	3E-83	(EA)	0.077	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1142	chr7	73012784	73012785	rs79624003	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	7q11.23	MLXIPL	rs79624003-G	NR	3E-135		0.069	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1142	chr7	73012784	73012785	rs79624003	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	7q11.23	MLXIPL	rs79624003-G	NR	1E-9	(Hispanic)	0.075	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1142	chr7	73012784	73012785	rs79624003	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	7q11.23	MLXIPL	rs79624003-G	NR	1E-6	(AA)	0.053	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1142	chr7	73012784	73012785	rs79624003	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	7q11.23	MLXIPL	rs79624003-G	NR	8E-95		0.066	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1142	chr7	73012784	73012785	rs79624003	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	7q11.23	MLXIPL	rs79624003-G	NR	8E-6	(AA)	0.052	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1142	chr7	73012784	73012785	rs79624003	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	7q11.23	MLXIPL	rs79624003-G	NR	7E-46	(EA)	0.077	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1142	chr7	73012784	73012785	rs79624003	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	7q11.23	MLXIPL	rs79624003-G	NR	1E-6	(Hispanic)	0.074	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1142	chr7	73012784	73012785	rs79624003	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	7q11.23	MLXIPL	rs79624003-G	NR	1E-41	(Asian)	0.06	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1142	chr7	73012784	73012785	rs79624003	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	7q11.23	MLXIPL	rs79624003-G	NR	8E-6	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
1142	chr7	73012784	73012785	rs79624003	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	7q11.23	MLXIPL	rs79624003-G	NR	3E-21	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1142	chr7	73012784	73012785	rs79624003	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	7q11.23	MLXIPL	rs79624003-G	NR	1E-25				Affymetrix, Illumina [NR] (imputed)	N
1142	chr7	73012784	73012785	rs79624003	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	7q11.23	MLXIPL	rs79624003-G	NR	4E-21	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1142	chr7	73012784	73012785	rs79624003	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	7q11.23	MLXIPL	rs79624003-G	NR	2E-25				Affymetrix, Illumina [NR] (imputed)	N
1142	chr7	73012784	73012785	rs79624003	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	7q11.23	MLXIPL	rs79624003-G	NR	6E-6	(Asian)	0.01	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1142	chr7	73012784	73012785	rs79624003	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	7q11.23	MLXIPL	rs79624003-G	NR	2E-18		0.012	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1142	chr7	73012784	73012785	rs79624003	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	7q11.23	MLXIPL	rs79624003-G	NR	1E-13	(EA)	0.013	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1142	chr7	73012784	73012785	rs79624003	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	7q11.23	MLXIPL	rs79624003-G	NR	2E-10		0.01002	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1142	chr7	73012784	73012785	rs79624003	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	7q11.23	MLXIPL	rs79624003-G	NR	1E-6	(EA)	0.01169	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1142	chr7	73013900	73013901	rs13235543	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Problematic alcohol use (MTAG)	972,915 European ancestry individuals	NA	7q11.23	NR	rs13235543-T	0.1248	3E-10		0.019551052	[0.013-0.026] unit increase	Affymetrix [10613246] (imputed)	N
1142	chr7	73015368	73015369	rs13240065	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	7q11.23	MLXIPL	rs13240065-?	NR	1E-262		0.1348	[0.13-0.14] unit decrease	Affymetrix [5701386] (imputed)	N
1142	chr7	73016180	73016181	rs34346326	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	7q11.23		rs34346326-C	NR	7E-18		0.0239	[0.018-0.029] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
1142	chr7	73016541	73016541	rs10653440	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total phospholipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	7q11.23		rs10653440-C	0.714993	9E-9		0.0254445	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
1142	chr7	73016541	73016541	rs10653440	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholines levels	115,006 European ancestry individuals	NA	7q11.23		rs10653440-C	0.714995	4E-9		0.0256979	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
1142	chr7	73016541	73016541	rs10653440	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphoglycerides levels	115,006 European ancestry individuals	NA	7q11.23		rs10653440-C	0.714995	7E-15		0.0341695	[0.026-0.043] unit increase	NR [11722792] (imputed)	N
1142	chr7	73016541	73016541	rs10653440	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphatidylcholine levels	115,006 European ancestry individuals	NA	7q11.23		rs10653440-C	0.714995	1E-11		0.0293891	[0.021-0.038] unit increase	NR [11722792] (imputed)	N
1142	chr7	73016541	73016541	rs10653440	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Docosahexaenoic acid levels	115,006 European ancestry individuals	NA	7q11.23		rs10653440-C	0.714995	2E-11		0.0297343	[0.021-0.038] unit increase	NR [11722792] (imputed)	N
1142	chr7	73016861	73016862	rs13240994	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x long total sleep time interaction (2df test)	2,933 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, up to 7,870 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,975 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 32,171 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 616 East Asian ancestry long sleepers, up to 9,486 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 929 African American controls, 2,517 East Asian ancestry controls, up to 38,126 European ancestry controls, 10,063 Hispanic controls	7q11.23	TBL2	rs13240994-?	NR	2E-16		0.01067	[0.008-0.0133] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
1142	chr7	73016861	73016862	rs13240994	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7q11.23	NR	rs13240994-T	NR	1E-110		0.112	unit increase	Affymetrix [at least 7091467] (imputed)	N
1142	chr7	73016861	73016862	rs13240994	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7q11.23	NR	rs13240994-T	0.903	1E-7	(East Asian)	0.135	unit increase	Affymetrix [at least 7091467] (imputed)	N
1142	chr7	73016861	73016862	rs13240994	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7q11.23	NR	rs13240994-T	0.865	3E-8	(Hispanic)	0.112	unit increase	Affymetrix [at least 7091467] (imputed)	N
1142	chr7	73016861	73016862	rs13240994	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7q11.23	NR	rs13240994-T	0.81	2E-95	(EA)	0.112	unit increase	Affymetrix [at least 7091467] (imputed)	N
1142	chr7	73016861	73016862	rs13240994	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7q11.23	NR	rs13240994-T	NR	2E-13		0.034	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1142	chr7	73016861	73016862	rs13240994	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7q11.23	NR	rs13240994-T	0.81	8E-13	(EA)	0.035	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1142	chr7	73017004	73017005	rs13226650	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x short total sleep time interaction (2df test)	3,007 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,474 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, up to 11,901 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,567 European ancestry controls, 4,047 Hispanic/Latino controls	up to 221 African American short sleepers, 629 East Asian ancestry short sleepers, up to 9,585 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 2,504 East Asian ancestry controls, up to 38,027 European ancestry controls, 10,061 Hispanic controls	7q11.23	TBL2	rs13226650-?	NR	5E-13		0.009532	[0.007-0.0121] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
1142	chr7	73017004	73017005	rs13226650	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	7q11.23	MLXIPL	rs13226650-A	0.8085	1E-23		0.048744	[0.039-0.058] mg/dL increase	Affymetrix, Illumina [8217339] (imputed)	N
1142	chr7	73017004	73017005	rs13226650	22399527	Kristiansson K	2012-03-07	Circ Cardiovasc Genet	Genome-wide screen for metabolic syndrome susceptibility Loci reveals strong lipid gene contribution but no evidence for common genetic basis for clustering of metabolic syndrome traits.	Metabolic syndrome	2,637 European ancestry cases, 7,927 European ancestry controls	NA	7q11.23	MLXIPL	rs13226650-A	0.83	2E-11	(TG)	0.12	[NR] mmol/l increase	Illumina [1257079] (imputed)	N
1142	chr7	73017656	73017657	rs35368205	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_34:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	7q11.23		rs35368205-T	NR	3E-10		0.0949359	[0.065-0.125] unit increase	Affymetrix [87696910] (imputed)	N
1142	chr7	73017656	73017657	rs35368205	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_34:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	7q11.23		rs35368205-T	NR	4E-10		0.091579	[0.063-0.12] unit increase	Affymetrix [87696910] (imputed)	N
1142	chr7	73017656	73017657	rs35368205	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_32:1_[M+H]1+/Phosphatidylcholine-P_32:0_[M+H]1+/Phosphatidylethanolamine-O_35:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	7q11.23		rs35368205-T	NR	2E-10		0.0955998	[0.066-0.125] unit increase	Affymetrix [87696910] (imputed)	N
1142	chr7	73017656	73017657	rs35368205	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_44:7_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	7q11.23		rs35368205-T	NR	3E-10		0.0919316	[0.063-0.12] unit increase	Affymetrix [87696910] (imputed)	N
1142	chr7	73017656	73017657	rs35368205	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_34:2_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	7q11.23		rs35368205-T	NR	2E-10		0.0835546	[0.058-0.109] unit decrease	Affymetrix [87696910] (imputed)	N
1142	chr7	73017656	73017657	rs35368205	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	7q11.23	MLXIPL	rs35368205-T	0.198404	1E-16		0.022821896	[0.017-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
1142	chr7	73018523	73018524	rs34166762	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7q11.23		rs34166762-?	NR	4E-14				NR [~ 8900000] (imputed)	N
1142	chr7	73019073	73019074	rs799158	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls, 33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	7q11.23		rs799158-C	NR	8E-9		0.0794	[0.052-0.106] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1142	chr7	73019073	73019074	rs799158	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	7q11.23	NR	rs799158-C	0.9572222	2E-8		0.0277953	[0.018-0.037] unit increase	Affymetrix [16583148] (imputed)	N
1142	chr7	73019073	73019074	rs799158	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls	NA	7q11.23	MLXIPL	rs799158-T	0.0431865	8E-9		0.07935356	[0.052-0.106] unit increase	Affymetrix [7288503] (imputed)	N
1142	chr7	73020300	73020301	rs799157	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	7q11.23	MLXIPL	rs799157-T	0.0435903	3E-20		0.00499776	[0.0039-0.0061] unit increase	Affymetrix [13995440] (imputed)	N
1142	chr7	73020300	73020301	rs799157	33760818	Francis M	2021-03-24	PLoS Genet	Genome-wide association study of fish oil supplementation on lipid traits in 81,246 individuals reveals new gene-diet interaction loci.	LDL levels x fish oil supplementation interaction (2df)	73,832 European ancestry individuals	7,180 European ancestry individuals	7q11.23	MLXIPL	rs799157-T	0.0435	2E-33				Affymetrix [7953137] (imputed)	N
1142	chr7	73020300	73020301	rs799157	33760818	Francis M	2021-03-24	PLoS Genet	Genome-wide association study of fish oil supplementation on lipid traits in 81,246 individuals reveals new gene-diet interaction loci.	LDL levels x fish oil supplementation interaction (1df)	73,832 European ancestry individuals	7,180 European ancestry individuals	7q11.23	MLXIPL	rs799157-T	0.0435	2E-11		1.459	[1.19-1.73] unit increase	Affymetrix [7953137] (imputed)	N
1142	chr7	73020300	73020301	rs799157	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	7q11.23	NR	rs799157-C	NR	3E-57		0.0935	[0.082-0.105] unit decrease	Affymetrix [9000000] (imputed)	N
1142	chr7	73020300	73020301	rs799157	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	7q11.23	NR	rs799157-C	NR	6E-16		0.0475	[0.036-0.059] unit decrease	Affymetrix [9000000] (imputed)	N
1142	chr7	73020300	73020301	rs799157	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	7q11.23	NR	rs799157-C	NR	4E-13		0.0426	[0.031-0.054] unit decrease	Affymetrix [9000000] (imputed)	N
1142	chr7	73020300	73020301	rs799157	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	7q11.23	NR	rs799157-C	NR	9E-17		0.0489	[0.037-0.06] unit decrease	Affymetrix [9000000] (imputed)	N
1142	chr7	73020300	73020301	rs799157	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	7q11.23	NR	rs799157-C	NR	7E-12		0.0421	[0.03-0.054] unit increase	Affymetrix [9000000] (imputed)	N
1142	chr7	73020300	73020301	rs799157	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	7q11.23	NR	rs799157-C	NR	7E-16		0.0474	[0.036-0.059] unit decrease	Affymetrix [9000000] (imputed)	N
1142	chr7	73020300	73020301	rs799157	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	7q11.23	NR	rs799157-C	NR	1E-27		0.0641	[0.053-0.076] unit decrease	Affymetrix [9000000] (imputed)	N
1142	chr7	73020300	73020301	rs799157	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	7q11.23	MLXIPL	rs799157-?	NR	9E-13		0.045	[0.034-0.056] unit increase	Affymetrix [5701386] (imputed)	N
1142	chr7	73020300	73020301	rs799157	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	7q11.23	NR	rs799157-T	0.0432221	9E-9		0.0169832	[0.011-0.023] unit increase	Affymetrix [16585854] (imputed)	N
1142	chr7	73020300	73020301	rs799157	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	7q11.23	NR	rs799157-T	0.0432221	4E-10		0.0207253	[0.014-0.028] unit increase	Affymetrix [16585866] (imputed)	N
1142	chr7	73020336	73020337	rs3812316	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	7q11.23		rs3812316-C	0.870718	1E-137		0.145147	[0.13-0.16] unit increase	NR [11722792] (imputed)	N
1142	chr7	73020336	73020337	rs3812316	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	7q11.23		rs3812316-C	0.870718	2E-103		0.127999	[0.12-0.14] unit increase	NR [11722792] (imputed)	N
1142	chr7	73020336	73020337	rs3812316	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	7q11.23		rs3812316-C	0.870718	2E-94		0.121991	[0.11-0.13] unit increase	NR [11722792] (imputed)	N
1142	chr7	73020336	73020337	rs3812316	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	7q11.23		rs3812316-C	0.870718	3E-79		0.109846	[0.098-0.121] unit increase	NR [11722792] (imputed)	N
1142	chr7	73020336	73020337	rs3812316	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	7q11.23		rs3812316-C	0.870718	2E-103		0.125178	[0.11-0.14] unit increase	NR [11722792] (imputed)	N
1142	chr7	73020336	73020337	rs3812316	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	7q11.23		rs3812316-C	0.870718	6E-64		0.0992214	[0.088-0.111] unit increase	NR [11722792] (imputed)	N
1142	chr7	73020336	73020337	rs3812316	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very small VLDL	115,082 European ancestry individuals	NA	7q11.23		rs3812316-C	0.870718	1E-83		0.11599	[0.1-0.13] unit increase	NR [11722792] (imputed)	N
1142	chr7	73020336	73020337	rs3812316	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large VLDL	115,082 European ancestry individuals	NA	7q11.23		rs3812316-C	0.870718	3E-93		0.120269	[0.11-0.13] unit increase	NR [11722792] (imputed)	N
1142	chr7	73020336	73020337	rs3812316	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large HDL	115,082 European ancestry individuals	NA	7q11.23		rs3812316-C	0.870718	4E-40		0.0794038	[0.068-0.091] unit increase	NR [11722792] (imputed)	N
1142	chr7	73020336	73020337	rs3812316	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small VLDL	115,082 European ancestry individuals	NA	7q11.23		rs3812316-C	0.870718	1E-127		0.142497	[0.13-0.15] unit increase	NR [11722792] (imputed)	N
1142	chr7	73020336	73020337	rs3812316	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small HDL	115,082 European ancestry individuals	NA	7q11.23		rs3812316-C	0.870718	8E-105		0.129063	[0.12-0.14] unit increase	NR [11722792] (imputed)	N
1142	chr7	73020336	73020337	rs3812316	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium HDL	115,082 European ancestry individuals	NA	7q11.23		rs3812316-C	0.870718	9E-70		0.106485	[0.095-0.118] unit increase	NR [11722792] (imputed)	N
1142	chr7	73020336	73020337	rs3812316	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large VLDL	115,082 European ancestry individuals	NA	7q11.23		rs3812316-C	0.870718	7E-89		0.118087	[0.11-0.13] unit increase	NR [11722792] (imputed)	N
1142	chr7	73020336	73020337	rs3812316	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	7q11.23		rs3812316-C	0.870718	3E-59		0.0962698	[0.085-0.108] unit increase	NR [11722792] (imputed)	N
1142	chr7	73020336	73020337	rs3812316	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in VLDL	115,082 European ancestry individuals	NA	7q11.23		rs3812316-C	0.870718	2E-97		0.123681	[0.11-0.14] unit increase	NR [11722792] (imputed)	N
1142	chr7	73020336	73020337	rs3812316	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in HDL	115,082 European ancestry individuals	NA	7q11.23		rs3812316-C	0.870718	1E-74		0.109868	[0.098-0.122] unit increase	NR [11722792] (imputed)	N
1142	chr7	73020336	73020337	rs3812316	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total triglycerides levels	115,082 European ancestry individuals	NA	7q11.23		rs3812316-C	0.870718	2E-97		0.124142	[0.11-0.14] unit increase	NR [11722792] (imputed)	N
1142	chr7	73020336	73020337	rs3812316	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large VLDL	115,082 European ancestry individuals	NA	7q11.23		rs3812316-C	0.870718	6E-83		0.114006	[0.1-0.13] unit increase	NR [11722792] (imputed)	N
1142	chr7	73020336	73020337	rs3812316	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	7q11.23		rs3812316-C	0.870718	4E-70		0.104757	[0.093-0.116] unit increase	NR [11722792] (imputed)	N
1142	chr7	73020336	73020337	rs3812316	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	7q11.23		rs3812316-C	0.870724	1E-93		0.116989	[0.11-0.13] unit increase	NR [11722792] (imputed)	N
1142	chr7	73020336	73020337	rs3812316	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	7q11.23		rs3812316-C	0.870724	1E-39		0.0778554	[0.066-0.089] unit decrease	NR [11722792] (imputed)	N
1142	chr7	73020336	73020337	rs3812316	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to monounsaturated fatty acids	115,006 European ancestry individuals	NA	7q11.23		rs3812316-C	0.870724	1E-65		0.100715	[0.089-0.112] unit decrease	NR [11722792] (imputed)	N
1142	chr7	73020336	73020337	rs3812316	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	7q11.23		rs3812316-C	0.870724	1E-63		0.0993677	[0.088-0.111] unit decrease	NR [11722792] (imputed)	N
1142	chr7	73020336	73020337	rs3812316	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of monounsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	7q11.23		rs3812316-C	0.870724	2E-79		0.111095	[0.1-0.123] unit increase	NR [11722792] (imputed)	N
1142	chr7	73020336	73020337	rs3812316	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	7q11.23		rs3812316-C	0.870718	1E-101		0.125312	[0.11-0.14] unit decrease	NR [11722792] (imputed)	N
1142	chr7	73020336	73020337	rs3812316	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	7q11.23		rs3812316-C	0.870718	5E-81		0.112316	[0.1-0.12] unit increase	NR [11722792] (imputed)	N
1142	chr7	73020336	73020337	rs3812316	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Monounsaturated fatty acid levels	115,006 European ancestry individuals	NA	7q11.23		rs3812316-C	0.870724	3E-78		0.113417	[0.1-0.13] unit increase	NR [11722792] (imputed)	N
1142	chr7	73020336	73020337	rs3812316	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	7q11.23		rs3812316-C	0.870718	2E-69		0.107524	[0.096-0.119] unit decrease	NR [11722792] (imputed)	N
1142	chr7	73020336	73020337	rs3812316	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	7q11.23		rs3812316-C	0.870718	3E-81		0.113071	[0.1-0.12] unit decrease	NR [11722792] (imputed)	N
1142	chr7	73020336	73020337	rs3812316	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	7q11.23		rs3812316-C	0.870718	4E-92		0.119033	[0.11-0.13] unit decrease	NR [11722792] (imputed)	N
1142	chr7	73020336	73020337	rs3812316	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	7q11.23		rs3812316-C	0.870718	2E-100		0.124664	[0.11-0.14] unit decrease	NR [11722792] (imputed)	N
1142	chr7	73020336	73020337	rs3812316	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	7q11.23		rs3812316-C	0.870718	5E-133		0.143174	[0.13-0.15] unit decrease	NR [11722792] (imputed)	N
1142	chr7	73020336	73020337	rs3812316	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	7q11.23		rs3812316-C	0.870718	7E-82		0.113316	[0.1-0.12] unit increase	NR [11722792] (imputed)	N
1142	chr7	73020336	73020337	rs3812316	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of chylomicrons and extremely large VLDL particles	115,082 European ancestry individuals	NA	7q11.23		rs3812316-C	0.870718	2E-75		0.108525	[0.097-0.12] unit increase	NR [11722792] (imputed)	N
1142	chr7	73020336	73020337	rs3812316	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	7q11.23		rs3812316-C	0.870718	2E-124		0.136682	[0.13-0.15] unit decrease	NR [11722792] (imputed)	N
1142	chr7	73020336	73020337	rs3812316	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	7q11.23		rs3812316-C	0.870718	1E-74		0.110737	[0.099-0.123] unit decrease	NR [11722792] (imputed)	N
1142	chr7	73020336	73020337	rs3812316	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	7q11.23		rs3812316-C	0.870718	2E-113		0.130175	[0.12-0.14] unit decrease	NR [11722792] (imputed)	N
1142	chr7	73020336	73020337	rs3812316	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	7q11.23		rs3812316-C	0.870718	3E-42		0.0839641	[0.072-0.096] unit increase	NR [11722792] (imputed)	N
1142	chr7	73020336	73020337	rs3812316	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	7q11.23		rs3812316-C	0.870718	5E-60		0.0955698	[0.084-0.107] unit decrease	NR [11722792] (imputed)	N
1142	chr7	73020336	73020337	rs3812316	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	7q11.23		rs3812316-C	0.870718	1E-125		0.138357	[0.13-0.15] unit decrease	NR [11722792] (imputed)	N
1142	chr7	73020336	73020337	rs3812316	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	7q11.23		rs3812316-C	0.870718	2E-99		0.126172	[0.11-0.14] unit decrease	NR [11722792] (imputed)	N
1142	chr7	73020336	73020337	rs3812316	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	7q11.23		rs3812316-C	0.870718	2E-34		0.0738693	[0.062-0.086] unit decrease	NR [11722792] (imputed)	N
1142	chr7	73020336	73020337	rs3812316	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	7q11.23		rs3812316-C	0.870718	1E-109		0.128539	[0.12-0.14] unit decrease	NR [11722792] (imputed)	N
1142	chr7	73020336	73020337	rs3812316	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	7q11.23		rs3812316-C	0.870728	2E-42		0.0819225	[0.07-0.094] unit decrease	NR [11722792] (imputed)	N
1142	chr7	73020336	73020337	rs3812316	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	7q11.23		rs3812316-C	0.870718	6E-72		0.103619	[0.092-0.115] unit decrease	NR [11722792] (imputed)	N
1142	chr7	73020336	73020337	rs3812316	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for VLDL particles	115,082 European ancestry individuals	NA	7q11.23		rs3812316-C	0.870718	6E-101		0.122276	[0.11-0.13] unit increase	NR [11722792] (imputed)	N
1142	chr7	73020336	73020337	rs3812316	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_48:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	7q11.23		rs3812316-G	NR	2E-10		0.145446	[0.1-0.19] unit increase	Affymetrix [87696910] (imputed)	N
1142	chr7	73020336	73020337	rs3812316	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:0_[M+H]1+/Phosphatidylethanolamine_35:0_[M+H]1+/Phosphatidate_37:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	7q11.23		rs3812316-G	NR	1E-10		0.113334	[0.079-0.148] unit increase	Affymetrix [87696910] (imputed)	N
1142	chr7	73020336	73020337	rs3812316	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_32:1_[M+H]1+/Phosphatidylcholine-P_32:0_[M+H]1+/Phosphatidylethanolamine-O_35:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	7q11.23		rs3812316-G	NR	4E-10		0.112078	[0.077-0.147] unit increase	Affymetrix [87696910] (imputed)	N
1142	chr7	73020336	73020337	rs3812316	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Triglyceride levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	7q11.23	MLXIPL	rs3812316-?		1E-84		0.1139	[0.1-0.13] unit decrease	Illumina [31500000] (imputed)	N
1142	chr7	73020336	73020337	rs3812316	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	7q11.23	MLXIPL	rs3812316-G	0.128229	5E-11		0.02169788	[0.015-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1142	chr7	73020336	73020337	rs3812316	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	7q11.23	NR	rs3812316-?	NR	9E-20		0.07622124	[0.06-0.093] unit decrease	Illumina [31978265] (imputed)	N
1142	chr7	73020336	73020337	rs3812316	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 157,516 European ancestry women, up to 180,131 African American, South Asian, East Asian and Hispanic ancestry women	up to 62,368 European ancestry women	7q11.23	MLXIPL	rs3812316-C	0.8809	4E-9		0.0276	[0.018-0.037] unit increase	Affymetrix, Illumina [at least 228985]	N
1142	chr7	73020336	73020337	rs3812316	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 157,516 European ancestry women	up to 62,368 European ancestry women	7q11.23	MLXIPL	rs3812316-C	0.8761	5E-9		0.0283	[0.019-0.038] unit increase	Affymetrix, Illumina [at least 228985]	N
1142	chr7	73020336	73020337	rs3812316	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	288,492 European ancestry individuals, up to 15,687 African American individuals, up to 29,315 South Asian ancestry individuals, up to 6,800 East Asian ancestry individuals, up to 4,075 Hispanic ancestry individuals	132,177 European ancestry individuals	7q11.23	MLXIPL	rs3812316-C	0.8812	2E-10		0.0213	[0.015-0.028] unit increase	Affymetrix, Illumina [at least 228985]	N
1142	chr7	73020336	73020337	rs3812316	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	288,492 European ancestry individuals	132,177 European ancestry individuals	7q11.23	MLXIPL	rs3812316-C	0.876	3E-10		0.0221	[0.015-0.029] unit increase	Affymetrix, Illumina [at least 228985]	N
1142	chr7	73020336	73020337	rs3812316	18193046	Kooner JS	2008-01-13	Nat Genet	Genome-wide scan identifies variation in MLXIPL associated with plasma triglycerides.	Triglycerides	1,005 European ancestry male individuals, 1,006 Indian Asian ancestry male individuals	6,827 European ancestry individuals, 2,528 Mexican ancestry individuals, 1,181 Indian Asian ancestry female individuals	7q11.23	MLXIPL	rs3812316-C	0.95	1E-10		10.5	[5.3-17.7] % increase	Perlegen [up to 216774]	N
1142	chr7	73020410	73020411	rs782291435	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Triglyceride levels	437,532 European ancestry individuals	NA	7q11.23		rs782291435-?	NR	3E-11		0.412424	[0.29-0.53] unit increase	NR [9800000] (imputed)	N
1142	chr7	73022210	73022211	rs77048596	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	111,667 East Asian ancestry individuals	NA	7q11.23		rs77048596-A	0.100137	1E-54		0.10378	[0.091-0.117] unit decrease	Illumina [13471903] (imputed)	N
1142	chr7	73022745	73022746	rs13246993	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	7q11.23		rs13246993-G	0.870476	1E-18		0.0526508	[0.041-0.064] unit increase	NR [11722792] (imputed)	N
1142	chr7	73022933	73022935	rs141854486	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	7q11.23	MLXIPL	rs141854486-A	0.128984	7E-35		0.040998507	[0.034-0.048] unit increase	Affymetrix [93095623] (imputed)	N
1142	chr7	73022933	73022933	rs782470771	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of linoleic acid to total fatty acids	115,006 European ancestry individuals	NA	7q11.23		rs782470771-AAG,rs782470771-AAG	0.870032	6E-29		0.0662391	[0.055-0.078] unit decrease	NR [11722792] (imputed)	N
1142	chr7	73022933	73022933	rs782470771	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of linoleic acid to total fatty acids	115,006 European ancestry individuals	NA	7q11.23		rs782470771-AAG,rs782470771-AAG	0.870032	6E-29		0.0662391	[0.055-0.078] unit decrease	NR [11722792] (imputed)	N
1142	chr7	73022933	73022933	rs782470771	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	7q11.23		rs782470771-AAG,rs782470771-AAG	0.870026	2E-37		0.0759495	[0.064-0.088] unit increase	NR [11722792] (imputed)	N
1142	chr7	73022933	73022933	rs782470771	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	7q11.23		rs782470771-AAG,rs782470771-AAG	0.870026	2E-37		0.0759495	[0.064-0.088] unit increase	NR [11722792] (imputed)	N
1142	chr7	73022933	73022933	rs782470771	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small HDL	115,082 European ancestry individuals	NA	7q11.23		rs782470771-AAG,rs782470771-AAG	0.870026	6E-39		0.079525	[0.068-0.091] unit increase	NR [11722792] (imputed)	N
1142	chr7	73022933	73022933	rs782470771	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small HDL	115,082 European ancestry individuals	NA	7q11.23		rs782470771-AAG,rs782470771-AAG	0.870026	6E-39		0.079525	[0.068-0.091] unit increase	NR [11722792] (imputed)	N
1142	chr7	73022933	73022933	rs782470771	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glutamine levels	114,751 European ancestry individuals	NA	7q11.23		rs782470771-AAG,rs782470771-AAG	0.869977	9E-31		0.0708927	[0.059-0.083] unit decrease	NR [11722792] (imputed)	N
1142	chr7	73022933	73022933	rs782470771	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glutamine levels	114,751 European ancestry individuals	NA	7q11.23		rs782470771-AAG,rs782470771-AAG	0.869977	9E-31		0.0708927	[0.059-0.083] unit decrease	NR [11722792] (imputed)	N
1142	chr7	73022933	73022933	rs782470771	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	7q11.23		rs782470771-AAG,rs782470771-AAG	0.870026	5E-56		0.0962538	[0.084-0.108] unit decrease	NR [11722792] (imputed)	N
1142	chr7	73022933	73022933	rs782470771	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	7q11.23		rs782470771-AAG,rs782470771-AAG	0.870026	5E-56		0.0962538	[0.084-0.108] unit decrease	NR [11722792] (imputed)	N
1142	chr7	73022933	73022933	rs782470771	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Citrate levels	115,068 European ancestry individuals	NA	7q11.23		rs782470771-AAG,rs782470771-AAG	0.870023	7E-25		0.0620268	[0.05-0.074] unit decrease	NR [11722792] (imputed)	N
1142	chr7	73022933	73022933	rs782470771	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Citrate levels	115,068 European ancestry individuals	NA	7q11.23		rs782470771-AAG,rs782470771-AAG	0.870023	7E-25		0.0620268	[0.05-0.074] unit decrease	NR [11722792] (imputed)	N
1142	chr7	73023880	73023881	rs12531645	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	7q11.23		rs12531645-A	NR	2E-12		0.0179	[0.013-0.023] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
1142	chr7	73023880	73023881	rs12531645	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Triglyceride levels	105,597 Japanese ancestry individuals	NA	7q11.23	MLXIPL	rs12531645-?	NR	3E-49		0.1056	[0.092-0.12] unit decrease novel	Illumina [6108953] (imputed)	N
1142	chr7	73025974	73025975	rs13234131	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	7q11.23		rs13234131-A	0.870557	1E-51		0.0910305	[0.079-0.103] unit increase	NR [11722792] (imputed)	N
1142	chr7	73025974	73025975	rs13234131	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	7q11.23		rs13234131-A	0.870557	2E-50		0.0892241	[0.078-0.101] unit increase	NR [11722792] (imputed)	N
1142	chr7	73025974	73025975	rs13234131	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	7q11.23		rs13234131-A	0.870557	2E-89		0.118156	[0.11-0.13] unit increase	NR [11722792] (imputed)	N
1142	chr7	73025974	73025975	rs13234131	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	7q11.23		rs13234131-A	0.870557	4E-106		0.127759	[0.12-0.14] unit decrease	NR [11722792] (imputed)	N
1142	chr7	73025974	73025975	rs13234131	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	7q11.23		rs13234131-A	0.870557	1E-71		0.106792	[0.095-0.118] unit decrease	NR [11722792] (imputed)	N
1142	chr7	73025974	73025975	rs13234131	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	7q11.23	MLXIPL	rs13234131-A	0.8747	2E-9		0.0113	[0.0074-0.0152] unit decrease	Affymetrix, Illumina [33811881] (imputed)	N
1142	chr7	73025974	73025975	rs13234131	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	7q11.23	MLXIPL	rs13234131-A	0.8853	4E-191		0.1275	[0.12-0.14] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1142	chr7	73026150	73026151	rs13234378	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	7q11.23	MLXIPL	rs13234378-A	0.871808	3E-107		0.0165045	[0.015-0.018] unit increase	Affymetrix [13995440] (imputed)	N
1142	chr7	73026150	73026151	rs13234378	31959922	Matoba N	2020-01-20	Nat Hum Behav	GWAS of 165,084 Japanese individuals identified nine loci associated with dietary habits.	Coffee consumption	152,634 Japanese ancestry individuals	NA	7q11.23	MLXIPL	rs13234378-?	NR	2E-8		0.108	[0.072-0.144] unit increase	Illumina [6108828] (imputed)	N
1142	chr7	73026150	73026151	rs13234378	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	7q11.23	MLXIPL	rs13234378-A	0.8858	4E-8		0.0235	[0.015-0.032] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1142	chr7	73026377	73026378	rs17145750	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	7q11.23		rs17145750-C	0.838276	7E-41		0.0749645	[0.064-0.086] unit decrease	NR [11722792] (imputed)	N
1142	chr7	73026377	73026378	rs17145750	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in IDL	115,082 European ancestry individuals	NA	7q11.23		rs17145750-C	0.838276	2E-10		0.0360536	[0.025-0.047] unit increase	NR [11722792] (imputed)	N
1142	chr7	73026377	73026378	rs17145750	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	7q11.23		rs17145750-C	0.838276	2E-26		0.058346	[0.048-0.069] unit decrease	NR [11722792] (imputed)	N
1142	chr7	73026377	73026378	rs17145750	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in IDL	115,082 European ancestry individuals	NA	7q11.23		rs17145750-C	0.838276	7E-46		0.0775993	[0.067-0.088] unit decrease	NR [11722792] (imputed)	N
1142	chr7	73026377	73026378	rs17145750	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	7q11.23		rs17145750-C	0.838276	5E-12		0.0387543	[0.028-0.05] unit decrease	NR [11722792] (imputed)	N
1142	chr7	73026377	73026378	rs17145750	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_34:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	7q11.23		rs17145750-T	NR	5E-11		0.107997	[0.076-0.14] unit increase	Affymetrix [87696910] (imputed)	N
1142	chr7	73026377	73026378	rs17145750	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_34:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	7q11.23		rs17145750-T	NR	7E-11		0.103614	[0.072-0.135] unit increase	Affymetrix [87696910] (imputed)	N
1142	chr7	73026377	73026378	rs17145750	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_34:1_[M+H]1+/Phosphatidylcholine-P_34:0_[M+H]1+/Phosphatidylethanolamine-O_37:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	7q11.23		rs17145750-T	NR	1E-10		0.100891	[0.07-0.132] unit increase	Affymetrix [87696910] (imputed)	N
1142	chr7	73026377	73026378	rs17145750	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_32:1_[M+H]1+/Phosphatidylcholine-P_32:0_[M+H]1+/Phosphatidylethanolamine-O_35:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	7q11.23		rs17145750-T	NR	2E-11		0.108687	[0.077-0.141] unit increase	Affymetrix [87696910] (imputed)	N
1142	chr7	73026377	73026378	rs17145750	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_44:7_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	7q11.23		rs17145750-T	NR	3E-11		0.105015	[0.074-0.136] unit increase	Affymetrix [87696910] (imputed)	N
1142	chr7	73026377	73026378	rs17145750	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_34:2_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	7q11.23		rs17145750-T	NR	2E-10		0.0918521	[0.064-0.12] unit decrease	Affymetrix [87696910] (imputed)	N
1142	chr7	73026377	73026378	rs17145750	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	7q11.23	MLXIPL	rs17145750-C	0.84	1E-25		10.5	z-score increase	Affymetrix [4311822] (imputed)	N
1142	chr7	73026377	73026378	rs17145750	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	7q11.23	NR	rs17145750-T	0.16104600000000002	1E-16		0.0127519	[0.0097-0.0158] unit increase	Affymetrix [16582621] (imputed)	N
1142	chr7	73026377	73026378	rs17145750	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	7q11.23	NR	rs17145750-T	0.16104600000000002	1E-10		0.0107381	[0.0075-0.014] unit increase	Affymetrix [16582614] (imputed)	N
1142	chr7	73026377	73026378	rs17145750	31837886	Kennedy OJ	2019-12-02	Am J Kidney Dis	Coffee Consumption and Kidney Function: A Mendelian Randomization Study.	Coffee consumption (cups per day)	227,666 British ancestry individuals	NA	7q11.23	MLXIPL	rs17145750-T	0.163	2E-10		0.05	NR cups per day increase	NR [NR]	N
1142	chr7	73026377	73026378	rs17145750	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals	at least 101,293 European ancestry individuals	7q11.23	MLXIPL	rs17145750-T	0.102	6E-9	(Japanese)	0.038	[0.024-0.052] unit decrease	Illumina [5864938] (imputed)	N
1142	chr7	73026377	73026378	rs17145750	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	7q11.23	MLXIPL	rs17145750-T	0.1611	3E-9		0.02935932	[0.02-0.039] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1142	chr7	73026377	73026378	rs17145750	27005778	Kettunen J	2016-03-23	Nat Commun	Genome-wide study for circulating metabolites identifies 62 loci and reveals novel systemic effects of LPA.	Metabolite levels (lipoprotein measures)	2,118 Erasmus Rucphen (founder/genetic isolate), 22,807 European ancestry individuals	NA	7q11.23	MLX1PL	rs17145750-T	0.15	4E-20	(VLDL diameter)	0.13	[0.11-0.15] unit decrease	Affymetrix, Illumina, Perlegen [12133295] (imputed)	N
1142	chr7	73026377	73026378	rs17145750	22001757	Chambers JC	2011-10-16	Nat Genet	Genome-wide association study identifies loci influencing concentrations of liver enzymes in plasma.	Liver enzyme levels (gamma-glutamyl transferase)	Up to 52,350 European ancestry individuals, up to 8,739 Indian Asian ancestry individuals	NA	7q11.23	MLXIPL	rs17145750-C	0.86	3E-9		4.5	[2.90-6.30] % increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1142	chr7	73029206	73029207	rs72649044	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	7q11.23	MLXIPL	rs72649044-T	NR	7E-11		0.0516309	[0.036-0.067] unit increase	Affymetrix [319769] (imputed)	N
1142	chr7	73029206	73029207	rs72649044	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	7q11.23	MLXIPL	rs72649044-T	NR	8E-11		0.0514381	[0.036-0.067] unit increase	Affymetrix [319769] (imputed)	N
1142	chr7	73029206	73029207	rs72649044	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	7q11.23	MLXIPL	rs72649044-T	NR	3E-8		0.0438307	[0.028-0.059] unit decrease	Affymetrix [321016] (imputed)	N
1142	chr7	73029436	73029437	rs33951980	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	7q11.23		rs33951980-T	NR	9E-115		0.0649	[0.059-0.07] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
1142	chr7	73029436	73029437	rs33951980	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	7q11.23	MLXIPL	rs33951980-T	NR	5E-9		0.0246255	[0.016-0.033] unit decrease	Affymetrix [321114] (imputed)	N
1142	chr7	73029436	73029437	rs33951980	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q11.23	NR	rs33951980-T	0.123697	3E-21				Affymetrix, Illumina [23114412] (imputed)	N
1142	chr7	73029436	73029437	rs33951980	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	7q11.23	NR	rs33951980-T	0.12936	7E-22		0.027627	[0.022-0.033] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
1142	chr7	73029436	73029437	rs33951980	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	7q11.23	NR	rs33951980-C	0.869451	2E-25		0.0307843	[0.025-0.037] unit increase	NR [NR]	N
1142	chr7	73029436	73029437	rs33951980	31409800	Pazoki R	2019-08-13	Nat Commun	GWAS for urinary sodium and potassium excretion highlights pathways shared with cardiovascular traits.	Urinary sodium excretion	446,237 European ancestry individuals	7,612 African ancestry individuals, 10,095 South Asian ancestry individuals	7q11.23	MLXIPL	rs33951980-C	0.870155	9E-13	(EA)	0.0131522	[0.0095-0.0168] unit increase	Affymetrix [~ 8800000] (imputed)	N
1142	chr7	73029436	73029437	rs33951980	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	7q11.23		rs33951980-?	NR	2E-15				NR [~ 8900000] (imputed)	N
1142	chr7	73030102	73030103	rs2074768	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	7q11.23		rs2074768-C	NR	4E-8		0.0143	[0.0092-0.0194] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
1142	chr7	73030174	73030175	rs13229619	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	7q11.23		rs13229619-G	0.869688	1E-70		0.104642	[0.093-0.116] unit decrease	NR [11722792] (imputed)	N
1142	chr7	73030174	73030175	rs13229619	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	7q11.23	NR	rs13229619-A	0.12936800000000004	8E-39		0.0537503	[0.046-0.062] unit increase	Affymetrix [16580851] (imputed)	N
1142	chr7	73033558	73033559	rs34062580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	7q11.23		rs34062580-G	0.869761	3E-67		0.102815	[0.091-0.114] unit increase	NR [11722792] (imputed)	N
1142	chr7	73033558	73033559	rs34062580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large HDL	115,082 European ancestry individuals	NA	7q11.23		rs34062580-G	0.869696	5E-48		0.080317	[0.07-0.091] unit decrease	NR [11722792] (imputed)	N
1142	chr7	73033558	73033559	rs34062580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large HDL	115,082 European ancestry individuals	NA	7q11.23		rs34062580-G	0.869696	7E-48		0.0801675	[0.069-0.091] unit decrease	NR [11722792] (imputed)	N
1142	chr7	73033558	73033559	rs34062580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	7q11.23		rs34062580-G	0.869761	7E-70		0.104963	[0.093-0.117] unit decrease	NR [11722792] (imputed)	N
1142	chr7	73033558	73033559	rs34062580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	7q11.23		rs34062580-G	0.869696	5E-20		0.0498623	[0.039-0.061] unit decrease	NR [11722792] (imputed)	N
1142	chr7	73033558	73033559	rs34062580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	7q11.23		rs34062580-G	0.869696	4E-71		0.102042	[0.091-0.113] unit decrease	NR [11722792] (imputed)	N
1142	chr7	73033558	73033559	rs34062580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large HDL particles	115,082 European ancestry individuals	NA	7q11.23		rs34062580-G	0.869696	1E-33		0.0667388	[0.056-0.078] unit decrease	NR [11722792] (imputed)	N
1142	chr7	73033558	73033559	rs34062580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	7q11.23		rs34062580-G	0.869761	9E-76		0.108042	[0.097-0.12] unit decrease	NR [11722792] (imputed)	N
1142	chr7	73033558	73033559	rs34062580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	7q11.23		rs34062580-G	0.869705	4E-64		0.0993179	[0.088-0.111] unit decrease	NR [11722792] (imputed)	N
1142	chr7	73033558	73033559	rs34062580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	7q11.23		rs34062580-G	0.869696	2E-52		0.0839288	[0.073-0.095] unit decrease	NR [11722792] (imputed)	N
1142	chr7	73033558	73033559	rs34062580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	7q11.23		rs34062580-G	0.869696	5E-43		0.0745056	[0.064-0.085] unit decrease	NR [11722792] (imputed)	N
1142	chr7	73033558	73033559	rs34062580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	7q11.23		rs34062580-G	0.869761	7E-79		0.110298	[0.099-0.122] unit decrease	NR [11722792] (imputed)	N
1142	chr7	73033558	73033559	rs34062580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	7q11.23		rs34062580-G	0.869696	9E-18		0.0511172	[0.039-0.063] unit decrease	NR [11722792] (imputed)	N
1142	chr7	73033558	73033559	rs34062580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	7q11.23		rs34062580-G	0.869696	2E-57		0.0885573	[0.078-0.099] unit decrease	NR [11722792] (imputed)	N
1142	chr7	73033558	73033559	rs34062580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	7q11.23		rs34062580-G	0.869696	7E-42		0.073296	[0.063-0.084] unit decrease	NR [11722792] (imputed)	N
1142	chr7	73033558	73033559	rs34062580	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	7q11.23	MLXIPL	rs34062580-A	0.129195	4E-10		0.02058027	[0.014-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1142	chr7	73034558	73034559	rs112139215	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	7q11.23	MLXIPL	rs112139215-A	0.067572	3E-20		0.047472	[0.037-0.058] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1142	chr7	73034928	73034929	rs71556736	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for LDL particles	115,082 European ancestry individuals	NA	7q11.23		rs71556736-C	0.868504	6E-11		0.0389267	[0.027-0.051] unit decrease	NR [11722792] (imputed)	N
1142	chr7	73034928	73034929	rs71556736	32603185	Ibi D	2020-06-30	Circ Genom Precis Med	Genome-wide Association Study of the Postprandial Triglyceride Response Yields Common Genetic Variation in Hepatic Lipase (LIPC).	Postprandial triglyceride levels	5,630 individuals	NA	7q11.23	MLXIPL	rs71556736-T	0.14	1E-10		0.17	[0.12-0.22] unit decrease	Illumina [NR] (imputed)	N
1142	chr7	73035856	73035857	rs7800944	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	129,405 East Asian ancestry individuals	NA	7q11.23		rs7800944-C	0.104811	2E-9		0.0344463	[0.023-0.046] unit decrease	Illumina [13475706] (imputed)	N
1142	chr7	73035856	73035857	rs7800944	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	133,471 East Asian ancestry individuals	NA	7q11.23		rs7800944-C	0.105475	4E-24		0.0577882	[0.047-0.069] unit decrease	Illumina [13476165] (imputed)	N
1142	chr7	73035856	73035857	rs7800944	25288136	Cornelis MC	2014-10-07	Mol Psychiatry	Genome-wide meta-analysis identifies six novel loci associated with habitual coffee consumption.	Coffee consumption (cups per day)	91,462 European ancestry individuals	30,062 European ancestry individuals, 7,964 African American individuals	7q11.23	MLXIPL, TBL2, VPS37D	rs7800944-T	0.72	3E-11		0.05	[0.030-0.070] unit decrease	Affymetrix, Illumina [2373958] (imputed)	N
1142	chr7	73037365	73037366	rs55747707	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	VLDL cholesterol levels	115,082 European ancestry individuals	NA	7q11.23		rs55747707-G	0.796358	2E-23		0.0512636	[0.041-0.061] unit increase	NR [11722792] (imputed)	N
1142	chr7	73037365	73037366	rs55747707	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large LDL	115,082 European ancestry individuals	NA	7q11.23		rs55747707-G	0.796358	1E-49		0.0746534	[0.065-0.085] unit increase	NR [11722792] (imputed)	N
1142	chr7	73037365	73037366	rs55747707	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in IDL	115,082 European ancestry individuals	NA	7q11.23		rs55747707-G	0.796358	1E-51		0.0759369	[0.066-0.086] unit increase	NR [11722792] (imputed)	N
1142	chr7	73037365	73037366	rs55747707	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small VLDL	115,082 European ancestry individuals	NA	7q11.23		rs55747707-G	0.796358	7E-64		0.0855596	[0.076-0.095] unit increase	NR [11722792] (imputed)	N
1142	chr7	73037365	73037366	rs55747707	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small LDL	115,082 European ancestry individuals	NA	7q11.23		rs55747707-G	0.796358	2E-8		0.029034	[0.019-0.039] unit increase	NR [11722792] (imputed)	N
1142	chr7	73037365	73037366	rs55747707	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium VLDL	115,082 European ancestry individuals	NA	7q11.23		rs55747707-G	0.796358	4E-46		0.0727759	[0.063-0.083] unit increase	NR [11722792] (imputed)	N
1142	chr7	73037365	73037366	rs55747707	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium LDL	115,082 European ancestry individuals	NA	7q11.23		rs55747707-G	0.796358	4E-13		0.0374559	[0.027-0.048] unit increase	NR [11722792] (imputed)	N
1142	chr7	73037365	73037366	rs55747707	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	7q11.23		rs55747707-G	0.796358	1E-16		0.0417707	[0.032-0.052] unit increase	NR [11722792] (imputed)	N
1142	chr7	73037365	73037366	rs55747707	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in VLDL	115,082 European ancestry individuals	NA	7q11.23		rs55747707-G	0.796358	3E-67		0.0872152	[0.077-0.097] unit increase	NR [11722792] (imputed)	N
1142	chr7	73037365	73037366	rs55747707	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total fatty acid levels	115,006 European ancestry individuals	NA	7q11.23		rs55747707-G	0.796362	8E-56		0.079882	[0.07-0.09] unit increase	NR [11722792] (imputed)	N
1142	chr7	73037365	73037366	rs55747707	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Saturated fatty acid levels	115,006 European ancestry individuals	NA	7q11.23		rs55747707-G	0.796362	4E-43		0.069736	[0.06-0.08] unit increase	NR [11722792] (imputed)	N
1142	chr7	73037365	73037366	rs55747707	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	7q11.23		rs55747707-G	0.796364	2E-38		0.0646647	[0.055-0.074] unit increase	NR [11722792] (imputed)	N
1142	chr7	73037365	73037366	rs55747707	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	7q11.23		rs55747707-G	0.79688	3E-28		0.0568483	[0.047-0.067] unit increase	NR [11722792] (imputed)	N
1142	chr7	73037365	73037366	rs55747707	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very small VLDL	115,082 European ancestry individuals	NA	7q11.23		rs55747707-G	0.796358	4E-8		0.0277802	[0.018-0.038] unit increase	NR [11722792] (imputed)	N
1142	chr7	73037365	73037366	rs55747707	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large VLDL	115,082 European ancestry individuals	NA	7q11.23		rs55747707-G	0.796358	3E-74		0.0903201	[0.081-0.1] unit increase	NR [11722792] (imputed)	N
1142	chr7	73037365	73037366	rs55747707	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small VLDL	115,082 European ancestry individuals	NA	7q11.23		rs55747707-G	0.796358	2E-31		0.0598505	[0.05-0.07] unit increase	NR [11722792] (imputed)	N
1142	chr7	73037365	73037366	rs55747707	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium VLDL	115,082 European ancestry individuals	NA	7q11.23		rs55747707-G	0.796358	4E-25		0.0531334	[0.043-0.063] unit increase	NR [11722792] (imputed)	N
1142	chr7	73037365	73037366	rs55747707	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium LDL	115,082 European ancestry individuals	NA	7q11.23		rs55747707-G	0.796358	3E-10		0.0324386	[0.022-0.043] unit increase	NR [11722792] (imputed)	N
1142	chr7	73037365	73037366	rs55747707	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large HDL	115,082 European ancestry individuals	NA	7q11.23		rs55747707-G	0.796358	5E-25		0.0466941	[0.038-0.056] unit decrease	NR [11722792] (imputed)	N
1142	chr7	73037365	73037366	rs55747707	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in VLDL	115,082 European ancestry individuals	NA	7q11.23		rs55747707-G	0.796358	6E-53		0.0776428	[0.068-0.088] unit increase	NR [11722792] (imputed)	N
1142	chr7	73037365	73037366	rs55747707	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	7q11.23		rs55747707-G	0.796358	2E-71		0.0888518	[0.079-0.099] unit increase	NR [11722792] (imputed)	N
1142	chr7	73037365	73037366	rs55747707	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	7q11.23		rs55747707-G	0.796358	3E-12		0.0359056	[0.026-0.046] unit increase	NR [11722792] (imputed)	N
1142	chr7	73037365	73037366	rs55747707	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	7q11.23		rs55747707-G	0.796358	4E-14		0.0389351	[0.029-0.049] unit increase	NR [11722792] (imputed)	N
1142	chr7	73037365	73037366	rs55747707	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	7q11.23		rs55747707-G	0.796358	6E-79		0.0934329	[0.084-0.103] unit increase	NR [11722792] (imputed)	N
1142	chr7	73037365	73037366	rs55747707	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in VLDL	115,082 European ancestry individuals	NA	7q11.23		rs55747707-G	0.796358	3E-41		0.068521	[0.059-0.079] unit increase	NR [11722792] (imputed)	N
1142	chr7	73037365	73037366	rs55747707	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small VLDL particles	115,082 European ancestry individuals	NA	7q11.23		rs55747707-G	0.796358	6E-68		0.0880278	[0.078-0.098] unit increase	NR [11722792] (imputed)	N
1142	chr7	73037365	73037366	rs55747707	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small LDL particles	115,082 European ancestry individuals	NA	7q11.23		rs55747707-G	0.796358	4E-9		0.0302903	[0.02-0.04] unit increase	NR [11722792] (imputed)	N
1142	chr7	73037365	73037366	rs55747707	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium VLDL particles	115,082 European ancestry individuals	NA	7q11.23		rs55747707-G	0.796358	4E-29		0.0574203	[0.047-0.067] unit increase	NR [11722792] (imputed)	N
1142	chr7	73037365	73037366	rs55747707	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium LDL particles	115,082 European ancestry individuals	NA	7q11.23		rs55747707-G	0.796358	4E-8		0.0282593	[0.018-0.038] unit increase	NR [11722792] (imputed)	N
1142	chr7	73037365	73037366	rs55747707	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of VLDL particles	115,082 European ancestry individuals	NA	7q11.23		rs55747707-G	0.796358	1E-39		0.0672043	[0.057-0.077] unit increase	NR [11722792] (imputed)	N
1142	chr7	73037365	73037366	rs55747707	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	7q11.23		rs55747707-G	0.796358	4E-49		0.0730986	[0.063-0.083] unit decrease	NR [11722792] (imputed)	N
1142	chr7	73037365	73037366	rs55747707	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large VLDL	115,082 European ancestry individuals	NA	7q11.23		rs55747707-G	0.796358	9E-51		0.0757986	[0.066-0.086] unit increase	NR [11722792] (imputed)	N
1142	chr7	73037365	73037366	rs55747707	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small VLDL	115,082 European ancestry individuals	NA	7q11.23		rs55747707-G	0.796358	4E-23		0.0507316	[0.041-0.061] unit increase	NR [11722792] (imputed)	N
1142	chr7	73037365	73037366	rs55747707	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small LDL	115,082 European ancestry individuals	NA	7q11.23		rs55747707-G	0.796358	7E-14		0.0385283	[0.028-0.049] unit increase	NR [11722792] (imputed)	N
1142	chr7	73037365	73037366	rs55747707	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium LDL	115,082 European ancestry individuals	NA	7q11.23		rs55747707-G	0.796358	2E-17		0.0437371	[0.034-0.054] unit increase	NR [11722792] (imputed)	N
1142	chr7	73037365	73037366	rs55747707	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large VLDL	115,082 European ancestry individuals	NA	7q11.23		rs55747707-G	0.796358	8E-51		0.076061	[0.066-0.086] unit increase	NR [11722792] (imputed)	N
1142	chr7	73037365	73037366	rs55747707	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in VLDL	115,082 European ancestry individuals	NA	7q11.23		rs55747707-G	0.796358	9E-13		0.0367637	[0.027-0.047] unit increase	NR [11722792] (imputed)	N
1142	chr7	73037365	73037366	rs55747707	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	7q11.23		rs55747707-G	0.796358	3E-51		0.0735514	[0.064-0.083] unit decrease	NR [11722792] (imputed)	N
1142	chr7	73037365	73037366	rs55747707	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	7q11.23		rs55747707-G	0.796358	5E-62		0.0834062	[0.074-0.093] unit increase	NR [11722792] (imputed)	N
1142	chr7	73037365	73037366	rs55747707	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	7q11.23		rs55747707-G	0.796358	5E-19		0.0457246	[0.036-0.056] unit increase	NR [11722792] (imputed)	N
1142	chr7	73037365	73037366	rs55747707	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	7q11.23		rs55747707-G	0.796358	1E-10		0.0330651	[0.023-0.043] unit increase	NR [11722792] (imputed)	N
1142	chr7	73037365	73037366	rs55747707	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	7q11.23		rs55747707-G	0.796358	8E-66		0.0860301	[0.076-0.096] unit increase	NR [11722792] (imputed)	N
1142	chr7	73037365	73037366	rs55747707	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	7q11.23		rs55747707-A	NR	3E-359		0.1069	[0.1-0.11] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
1142	chr7	73037365	73037366	rs55747707	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	7q11.23		rs55747707-A	NR	8E-24		0.0276	[0.022-0.033] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
1142	chr7	73037365	73037366	rs55747707	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	7q11.23	MLXIPL	rs55747707-A	NR	1E-25		0.0366684	[0.03-0.044] unit decrease	Affymetrix [319769] (imputed)	N
1142	chr7	73037365	73037366	rs55747707	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	7q11.23	MLXIPL	rs55747707-A	NR	2E-25		0.0364661	[0.03-0.043] unit decrease	Affymetrix [319769] (imputed)	N
1142	chr7	73037365	73037366	rs55747707	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	7q11.23	MLXIPL	rs55747707-A	NR	3E-10		0.0222713	[0.015-0.029] unit decrease	Affymetrix [321114] (imputed)	N
1142	chr7	73037365	73037366	rs55747707	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	7q11.23	MLXIPL	rs55747707-A	NR	7E-16		0.0285796	[0.022-0.036] unit decrease	Affymetrix [321169] (imputed)	N
1142	chr7	73037365	73037366	rs55747707	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	7q11.23	MLXIPL	rs55747707-A	0.202679	1E-47		0.040471926	[0.035-0.046] unit decrease	Affymetrix [93095623] (imputed)	N
1142	chr7	73037365	73037366	rs55747707	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	7q11.23	MLXIPL	rs55747707-A	0.20267	2E-17		0.023728509	[0.018-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
1142	chr7	73037365	73037366	rs55747707	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	7q11.23	MLXIPL	rs55747707-A	0.202604	3E-46		0.039604183	[0.034-0.045] unit decrease	Affymetrix [93095623] (imputed)	N
1142	chr7	73037365	73037366	rs55747707	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	7q11.23	MLXIPL	rs55747707-A	0.202592	2E-47		0.040125027	[0.035-0.046] unit decrease	Affymetrix [93095623] (imputed)	N
1142	chr7	73037365	73037366	rs55747707	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	7q11.23	NR	rs55747707-?	NR	3E-26				Affymetrix [~ 8270000] (imputed)	N
1142	chr7	73037365	73037366	rs55747707	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	7q11.23		rs55747707-?	NR	3E-25				NR [~ 8900000] (imputed)	N
1142	chr7	73037365	73037366	rs55747707	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	7q11.23		rs55747707-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1142	chr7	73037365	73037366	rs55747707	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	7q11.23	MLXIPL	rs55747707-A	0.1796	6E-19		0.0314	[0.025-0.038] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1142	chr7	73037365	73037366	rs55747707	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	7q11.23	NR	rs55747707-A	0.1783	3E-25		0.0244	[0.02-0.029] unit decrease	NR [~ 27400000] (imputed)	N
1142	chr7	73037365	73037366	rs55747707	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	7q11.23	NA	rs55747707-A	0.1765	3E-11		0.0154	[0.011-0.02] unit decrease	NR [~ 27400000] (imputed)	N
1142	chr7	73037365	73037366	rs55747707	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	7q11.23	NR	rs55747707-A	0.1765	3E-11		0.0154	[0.011-0.02] unit decrease	NR [~ 27400000] (imputed)	N
1142	chr7	73037955	73037956	rs34060476	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	7q11.23		rs34060476-A	0.865176	3E-106		0.124417	[0.11-0.14] unit increase	NR [11722792] (imputed)	N
1142	chr7	73037955	73037956	rs34060476	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	7q11.23		rs34060476-A	0.86518	1E-72		0.102569	[0.091-0.114] unit increase	NR [11722792] (imputed)	N
1142	chr7	73037955	73037956	rs34060476	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small LDL	115,082 European ancestry individuals	NA	7q11.23		rs34060476-A	0.86518	3E-93		0.120213	[0.11-0.13] unit increase	NR [11722792] (imputed)	N
1142	chr7	73037955	73037956	rs34060476	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium VLDL	115,082 European ancestry individuals	NA	7q11.23		rs34060476-A	0.86518	1E-96		0.122366	[0.11-0.13] unit increase	NR [11722792] (imputed)	N
1142	chr7	73037955	73037956	rs34060476	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium LDL	115,082 European ancestry individuals	NA	7q11.23		rs34060476-A	0.86518	4E-78		0.110475	[0.099-0.122] unit increase	NR [11722792] (imputed)	N
1142	chr7	73037955	73037956	rs34060476	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in LDL	115,082 European ancestry individuals	NA	7q11.23		rs34060476-A	0.86518	2E-62		0.0986846	[0.087-0.11] unit increase	NR [11722792] (imputed)	N
1142	chr7	73037955	73037956	rs34060476	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small HDL	115,082 European ancestry individuals	NA	7q11.23		rs34060476-A	0.86518	2E-41		0.0813952	[0.07-0.093] unit increase	NR [11722792] (imputed)	N
1142	chr7	73037955	73037956	rs34060476	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large VLDL	115,082 European ancestry individuals	NA	7q11.23		rs34060476-A	0.86518	5E-83		0.112694	[0.1-0.12] unit increase	NR [11722792] (imputed)	N
1142	chr7	73037955	73037956	rs34060476	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	7q11.23		rs34060476-A	0.86518	5E-30		0.060429	[0.05-0.071] unit decrease	NR [11722792] (imputed)	N
1142	chr7	73037955	73037956	rs34060476	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	7q11.23		rs34060476-A	0.865176	2E-35		0.0689962	[0.058-0.08] unit decrease	NR [11722792] (imputed)	N
1142	chr7	73037955	73037956	rs34060476	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	7q11.23		rs34060476-A	0.86518	3E-50		0.0900457	[0.078-0.102] unit decrease	NR [11722792] (imputed)	N
1142	chr7	73037955	73037956	rs34060476	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	7q11.23		rs34060476-A	0.86518	2E-27		0.0654365	[0.054-0.077] unit decrease	NR [11722792] (imputed)	N
1142	chr7	73037955	73037956	rs34060476	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large VLDL	115,082 European ancestry individuals	NA	7q11.23		rs34060476-A	0.86518	3E-84		0.113386	[0.1-0.12] unit increase	NR [11722792] (imputed)	N
1142	chr7	73037955	73037956	rs34060476	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	7q11.23		rs34060476-A	0.86518	3E-55		0.0881121	[0.077-0.099] unit decrease	NR [11722792] (imputed)	N
1142	chr7	73037955	73037956	rs34060476	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	7q11.23		rs34060476-A	0.86518	2E-37		0.0677603	[0.057-0.078] unit decrease	NR [11722792] (imputed)	N
1142	chr7	73037955	73037956	rs34060476	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large VLDL particles	115,082 European ancestry individuals	NA	7q11.23		rs34060476-A	0.86518	9E-86		0.113945	[0.1-0.13] unit increase	NR [11722792] (imputed)	N
1142	chr7	73037955	73037956	rs34060476	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small HDL particles	115,082 European ancestry individuals	NA	7q11.23		rs34060476-A	0.86518	3E-27		0.0655032	[0.054-0.077] unit increase	NR [11722792] (imputed)	N
1142	chr7	73037955	73037956	rs34060476	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large VLDL particles	115,082 European ancestry individuals	NA	7q11.23		rs34060476-A	0.86518	2E-85		0.114224	[0.1-0.13] unit increase	NR [11722792] (imputed)	N
1142	chr7	73037955	73037956	rs34060476	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	7q11.23		rs34060476-A	0.86518	1E-42		0.0827921	[0.071-0.095] unit increase	NR [11722792] (imputed)	N
1142	chr7	73037955	73037956	rs34060476	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	7q11.23		rs34060476-A	0.86518	2E-43		0.0831293	[0.071-0.095] unit increase	NR [11722792] (imputed)	N
1142	chr7	73037955	73037956	rs34060476	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small HDL	115,082 European ancestry individuals	NA	7q11.23		rs34060476-A	0.86518	4E-15		0.0476499	[0.036-0.06] unit increase	NR [11722792] (imputed)	N
1142	chr7	73037955	73037956	rs34060476	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	7q11.23		rs34060476-A	0.86518	7E-76		0.107664	[0.096-0.119] unit increase	NR [11722792] (imputed)	N
1142	chr7	73037955	73037956	rs34060476	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small HDL	115,082 European ancestry individuals	NA	7q11.23		rs34060476-A	0.86518	2E-19		0.0544154	[0.043-0.066] unit increase	NR [11722792] (imputed)	N
1142	chr7	73037955	73037956	rs34060476	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	7q11.23		rs34060476-A	0.86518	7E-80		0.110258	[0.099-0.122] unit increase	NR [11722792] (imputed)	N
1142	chr7	73037955	73037956	rs34060476	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	7q11.23		rs34060476-A	0.86518	3E-35		0.0663993	[0.056-0.077] unit decrease	NR [11722792] (imputed)	N
1142	chr7	73037955	73037956	rs34060476	33287642	Said MA	2020-12-08	J Am Heart Assoc	Associations of Observational and Genetically Determined Caffeine Intake With Coronary Artery Disease and Diabetes Mellitus.	Caffeine consumption from coffee	373,522 European ancestry individuals	NA	7q11.23	MLXIPL	rs34060476-A	0.865581	7E-14		0.02519	[0.019-0.032] unit decrease	Affymetrix [19400838] (imputed)	N
1142	chr7	73037955	73037956	rs34060476	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	7q11.23	MLXIPL	rs34060476-G	0.133724	2E-46		0.047066115	[0.041-0.054] unit decrease	Affymetrix [93095623] (imputed)	N
1142	chr7	73037955	73037956	rs34060476	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	7q11.23	NR	rs34060476-G	0.13366900000000004	5E-26		0.0197945	[0.016-0.023] unit increase	Affymetrix [16578495] (imputed)	N
1142	chr7	73037955	73037956	rs34060476	31358974	Evangelou E	2019-07-29	Nat Hum Behav	New alcohol-related genes suggest shared genetic mechanisms with neuropsychiatric disorders.	Alcohol consumption	480,842 European ancestry individuals	NA	7q11.23	MLXIPL	rs34060476-A	0.87	5E-13		0.011	[0.0071-0.0149] unit decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1142	chr7	73037955	73037956	rs34060476	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Coffee consumption	335,909 European ancestry individuals	39,924 European ancestry individuals	7q11.23	MLXIPL	rs34060476-G	0.1337	2E-18		0.019	[0.015-0.023] unit increase	Affymetrix [~ 7740000] (imputed)	N
1142	chr7	73037955	73037956	rs34060476	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter alcoholic beverage consumption	336,448 European ancestry individuals	39,924 European ancestry individuals	7q11.23	MLXIPL	rs34060476-G	0.1335	4E-6		0.0069	[0.004-0.0098] unit increase	Affymetrix [~ 7740000] (imputed)	N
1142	chr7	73039405	73039406	rs35493868	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	7q11.23		rs35493868-C	0.796325	7E-28		0.0534031	[0.044-0.063] unit increase	NR [11722792] (imputed)	N
1142	chr7	73039405	73039406	rs35493868	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	HDL cholesterol levels	115,082 European ancestry individuals	NA	7q11.23		rs35493868-C	0.796325	2E-13		0.0338309	[0.025-0.043] unit decrease	NR [11722792] (imputed)	N
1142	chr7	73039405	73039406	rs35493868	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	7q11.23		rs35493868-C	0.796314	1E-10		0.0292202	[0.02-0.038] unit increase	NR [11722792] (imputed)	N
1142	chr7	73039405	73039406	rs35493868	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	7q11.23		rs35493868-C	0.796325	4E-29		0.0504578	[0.042-0.059] unit decrease	NR [11722792] (imputed)	N
1142	chr7	73039405	73039406	rs35493868	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	7q11.23		rs35493868-C	0.796325	7E-15		0.0359753	[0.027-0.045] unit decrease	NR [11722792] (imputed)	N
1142	chr7	73039405	73039406	rs35493868	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	7q11.23		rs35493868-G	NR	4E-44		0.0371	[0.032-0.042] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
1142	chr7	73039405	73039406	rs35493868	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	7q11.23	MLXIPL	rs35493868-C	0.79798	2E-55		0.0372747	[0.033-0.042] unit decrease	Affymetrix [NR] (imputed)	N
1142	chr7	73039405	73039406	rs35493868	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Non-oily fish consumption	335,576 European ancestry individuals	NA	7q11.23	FZD9, BAZ1B, BCL7B, TBL2, MLXIPL	rs35493868-?	NR	3E-9		0.018068	[0.012-0.024] unit increase	Affymetrix [25921788] (imputed)	N
1142	chr7	73040813	73040814	rs34121855	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Polyunsaturated fatty acid levels	115,006 European ancestry individuals	NA	7q11.23		rs34121855-T	0.796241	7E-35		0.0615233	[0.052-0.071] unit increase	NR [11722792] (imputed)	N
1142	chr7	73040813	73040814	rs34121855	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-6 fatty acid levels	115,006 European ancestry individuals	NA	7q11.23		rs34121855-T	0.796241	3E-23		0.049983	[0.04-0.06] unit increase	NR [11722792] (imputed)	N
1142	chr7	73040813	73040814	rs34121855	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Linoleic acid levels	115,006 European ancestry individuals	NA	7q11.23		rs34121855-T	0.796241	1E-19		0.0457692	[0.036-0.056] unit increase	NR [11722792] (imputed)	N
1142	chr7	73040813	73040814	rs34121855	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	7q11.23		rs34121855-G	NR	3E-12		0.0185	[0.013-0.024] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
1142	chr7	73040813	73040814	rs34121855	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	7q11.23	MLXIPL	rs34121855-G	NR	1E-14		0.0269918	[0.02-0.034] unit increase	Affymetrix [321016] (imputed)	N
1142	chr7	73040813	73040814	rs34121855	33763119	Read RW	2021-03-02	Front Genet	Genome-Wide Identification of Rare and Common Variants Driving Triglyceride Levels in a Nevada Population.	Triglyceride levels	9,183 European ancestry individuals	35,321 European ancestry individuals	7q11.23		rs34121855-G	NR	8E-9		7.104	mg/dl decrease	NR [5712318]	N
1142	chr7	73040813	73040814	rs34121855	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	7q11.23	MLXIPL	rs34121855-G	0.202784	8E-12		0.019088786	[0.014-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1142	chr7	73040813	73040814	rs34121855	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	7q11.23	MLXIPL	rs34121855-G	0.202499	9E-10		0.017091604	[0.012-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1142	chr7	73040813	73040814	rs34121855	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum albumin levels	102,223 Japanese ancestry individuals	NA	7q11.23	MLXIPL, VPS37D	rs34121855-?	NR	2E-9		0.04428	[0.03-0.059] unit decrease	Illumina [6108953] (imputed)	N
1142	chr7	73040832	73040833	rs73137078	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	7q11.23	MLXIPL	rs73137078-C	NR	3E-11		0.0546652	[0.039-0.071] unit decrease	Affymetrix [321788] (imputed)	N
1142	chr7	73042084	73042085	rs62466318	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to omega-3 fatty acids	115,006 European ancestry individuals	NA	7q11.23		rs62466318-C	0.795799	8E-34		0.0599701	[0.05-0.07] unit decrease	NR [11722792] (imputed)	N
1142	chr7	73042084	73042085	rs62466318	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-3 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	7q11.23		rs62466318-C	0.795799	3E-16		0.0404238	[0.031-0.05] unit increase	NR [11722792] (imputed)	N
1142	chr7	73042084	73042085	rs62466318	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-3 fatty acid levels	115,006 European ancestry individuals	NA	7q11.23		rs62466318-C	0.795799	6E-48		0.0716979	[0.062-0.081] unit increase	NR [11722792] (imputed)	N
1142	chr7	73042084	73042085	rs62466318	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycoprotein acetyls levels	115,082 European ancestry individuals	NA	7q11.23		rs62466318-C	0.7958	5E-63		0.0852219	[0.075-0.095] unit increase	NR [11722792] (imputed)	N
1142	chr7	73042084	73042085	rs62466318	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	7q11.23		rs62466318-T	NR	3E-12		0.0176	[0.013-0.022] unit decrease	Affymetrix, Illumina [20538307] (imputed)	N
1142	chr7	73042084	73042085	rs62466318	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	7q11.23	MLXIPL	rs62466318-T	0.202991	4E-18		0.024376318	[0.019-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
1142	chr7	73042084	73042085	rs62466318	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	7q11.23	MLXIPL	rs62466318-T	0.203143	1E-19		0.024990488	[0.02-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
1142	chr7	73042084	73042085	rs62466318	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q11.23	NR	rs62466318-T	0.178468	3E-19				Affymetrix, Illumina [24649327] (imputed)	N
1142	chr7	73042084	73042085	rs62466318	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	7q11.23	NR	rs62466318-T	0.202209	1E-18		0.021214	[0.017-0.026] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1142	chr7	73042084	73042085	rs62466318	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Lamb consumption	335,576 European ancestry individuals	NA	7q11.23	FZD9, BAZ1B, BCL7B, TBL2, MLXIPL	rs62466318-?	NR	5E-9		0.0178797	[0.012-0.024] unit increase	Affymetrix [25921788] (imputed)	N
1142	chr7	73042084	73042085	rs62466318	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Alcohol consumption (drinks per week)	414,343 European ancestry individuals	NA	7q11.23	MLXIPL	rs62466318-T	0.204	7E-10		0.01704703	[0.012-0.022] unit increase	Affymetrix [11514936] (imputed)	N
1142	chr7	73042084	73042085	rs62466318	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	7q11.23	MLXIPL	rs62466318-T	0.2039	3E-16		0.03656896	[0.028-0.045] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1142	chr7	73042084	73042085	rs62466318	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	7q11.23	MLXIPL	rs62466318-T	0.2039	2E-16		0.03673838	[0.028-0.045] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1142	chr7	73042084	73042085	rs62466318	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	7q11.23	MLXIPL	rs62466318-T	0.2039	3E-15		0.03519386	[0.026-0.044] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1142	chr7	73042084	73042085	rs62466318	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	7q11.23	MLXIPL	rs62466318-T	0.2039	8E-16		0.03591725	[0.027-0.045] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1142	chr7	73042302	73042306	rs150402439	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	7q11.23		rs150402439-G	NR	5E-21		0.0302	[0.024-0.036] unit decrease	Affymetrix, Illumina [20529698] (imputed)	N
1142	chr7	73042442	73042443	rs6460047	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	7q11.23		rs6460047-C	NR	1E-18		0.0217	[0.017-0.027] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
1142	chr7	73042442	73042443	rs6460047	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	7q11.23	MLXIPL	rs6460047-C	0.208183	7E-10		0.016890567	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1142	chr7	73042442	73042443	rs6460047	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	7q11.23	NR	rs6460047-C	0.208	4E-11		0.0108214	[0.0076-0.014] unit increase	NR [~ 9732723] (imputed)	N
1142	chr7	73042442	73042443	rs6460047	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week)	up to 941,280 European ancestry individuals	NA	7q11.23	NR	rs6460047-C	0.208	1E-10		0.011623538	[0.0081-0.0151] unit increase	NR [~ 10000000] (imputed)	N
1142	chr7	73042442	73042443	rs6460047	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum uric acid levels	109,029 Japanese ancestry individuals	NA	7q11.23	MLXIPL, VPS37D	rs6460047-?	NR	4E-9		0.04096	[0.027-0.055] unit decrease novel	Illumina [6108953] (imputed)	N
1142	chr7	73042613	73042614	rs7786376	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	120,539 East Asian ancestry individuals	NA	7q11.23		rs7786376-G	0.109362	3E-12		0.0422734	[0.03-0.054] unit decrease	Illumina [13474682] (imputed)	N
1142	chr7	73042613	73042614	rs7786376	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cholelithiasis	26,122 European ancestry cases, 461,431 European ancestry controls, 9,305 East Asian ancestry cases, 168,253 East Asian ancestry controls	NA	7q11.23		rs7786376-G	NR	1E-8		0.058	[0.038-0.078] unit increase	Affymetrix, Illumina [25844936] (imputed)	N
1142	chr7	73042613	73042614	rs7786376	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Gamma glutamyl transferase levels	118,309 Japanese ancestry individuals	NA	7q11.23	MLXIPL, VPS37D	rs7786376-?	NR	1E-21		0.06432	[0.051-0.078] unit decrease novel	Illumina [6108953] (imputed)	N
1142	chr7	73043100	73043101	rs34958196	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	7q11.23		rs34958196-A	NR	9E-9		0.0167	[0.011-0.022] unit decrease	Affymetrix, Illumina [20536605] (imputed)	N
1142	chr7	73043100	73043101	rs34958196	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol consumption (drinks per week) (MTAG)	972,915 European ancestry individuals	NA	7q11.23	NR	rs34958196-A	0.129	3E-10		0.016678618	[0.011-0.022] unit increase	Affymetrix [NR] (imputed)	N
1142	chr7	73043664	73043665	rs34430945	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q11.23	NR	rs34430945-C	0.133182	3E-16				Affymetrix, Illumina [21126107] (imputed)	N
1142	chr7	73045482	73045483	rs7784668	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	7q11.23		rs7784668-C	0.129535	6E-18		0.0276086	[0.021-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
1142	chr7	73045937	73045938	rs78815801	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	7q11.23	NR	rs78815801-C	0.129095	1E-16		0.024855	[0.019-0.031] SD unit decrease	Affymetrix, Illumina [50282193] (imputed)	N
1142	chr7	73047502	73047503	rs192716352	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	7q11.23	MLXIPL	rs192716352-A	NR	9E-9		0.0535012	[0.035-0.072] unit decrease	Affymetrix [321788] (imputed)	N
1142	chr7	73047502	73047503	rs192716352	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	7q11.23	MLXIPL	rs192716352-A	NR	5E-8		0.0488701	[0.031-0.066] unit decrease	Affymetrix [321016] (imputed)	N
1142	chr7	73047510	73047511	rs36091304	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	7q11.23	MLXIPL	rs36091304-C	NR	4E-20		0.0291325	[0.023-0.035] unit decrease	Affymetrix [319769] (imputed)	N
1142	chr7	73047510	73047511	rs36091304	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	7q11.23	MLXIPL	rs36091304-C	NR	3E-20		0.0291845	[0.023-0.035] unit decrease	Affymetrix [319769] (imputed)	N
1142	chr7	73047510	73047511	rs36091304	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	7q11.23	MLXIPL	rs36091304-C	NR	2E-10		0.0204214	[0.014-0.027] unit decrease	Affymetrix [321114] (imputed)	N
1142	chr7	73047550	73047551	rs35855035	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter non-alcoholic beverage consumption	85,852 European ancestry individuals	39,924 European ancestry individuals	7q11.23	MLXIPL	rs35855035-T	0.2166	3E-8		0.0108	[0.0069-0.0147] unit increase	Affymetrix [~ 7740000] (imputed)	N
1142	chr7	73048094	73048095	rs13230514	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	7q11.23		rs13230514-?	NR	4E-8		0.00552379	[0.0036-0.0075] unit increase	NR [NR]	N
1142	chr7	73051990	73051990	rs36019311	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	7q11.23	NR	rs36019311-GTA	0.12956599999999996	3E-14		0.028839	[0.021-0.036] unit increase	Affymetrix [16585745] (imputed)	N
1142	chr7	73052056	73052057	rs799165	27790247	He L	2016-11-03	Front Genet	Pleiotropic Meta-Analyses of Longitudinal Studies Discover Novel Genetic Variants Associated with Age-Related Diseases.	Age-related diseases, mortality and associated endophenotypes	9,618 European ancestry individuals	19,796 European ancestry individuals	7q11.23	NR	rs799165-?	NR	9E-15				Affymetrix [NR]	N
1142	chr7	73052056	73052057	rs799165	27790247	He L	2016-11-03	Front Genet	Pleiotropic Meta-Analyses of Longitudinal Studies Discover Novel Genetic Variants Associated with Age-Related Diseases.	Age-related disease endophenotypes	9,618 European ancestry individuals	19,796 European ancestry individuals	7q11.23	NR	rs799165-?	NR	8E-19				Affymetrix [NR]	N
1142	chr7	73054745	73054746	rs71556737	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	7q11.23	MLXIPL	rs71556737-A	NR	2E-14		0.0242435	[0.018-0.03] unit decrease	Affymetrix [321169] (imputed)	N
1142	chr7	73055460	73055461	rs35814008	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large HDL	115,082 European ancestry individuals	NA	7q11.23		rs35814008-A	0.86512	2E-21		0.0548479	[0.044-0.066] unit increase	NR [11722792] (imputed)	N
1142	chr7	73056749	73056750	rs6957745	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	7q11.23	intergenic	rs6957745-C	0.2032	4E-12		0.0308444	[0.022-0.04] unit increase	Affymetrix [~ 2500000] (imputed)	N
1142	chr7	73056749	73056750	rs6957745	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	7q11.23	intergenic	rs6957745-C	0.2032	4E-11		0.02946504	[0.021-0.038] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1142	chr7	73056804	73056805	rs62466330	27680694	Horikoshi M	2016-10-13	Nature	Genome-wide associations for birth weight and correlations with adult disease.	Birth weight	133,903 European ancestry individuals, 6,635 African American individuals, 420 Turkish ancestry individuals, 365 Moroccan ancestry individuals, 395 Surinamese ancestry individuals, 840 Chinese ancestry individuals.	9,799 European ancestry individuals, 1,449 Filipino ancestry individuals.	7q11.23	MLXIPL	rs62466330-C	0.066	6E-12		0.0512	[0.037-0.066] unit increase	Affymetrix, Illumina [at least 22434434] (imputed)	N
1142	chr7	73056992	73056993	rs6975732	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	7q11.23	MLXIPL	rs6975732-T	NR	4E-9		0.0184322	[0.012-0.025] unit decrease	Affymetrix [319769] (imputed)	N
1142	chr7	73056992	73056993	rs6975732	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	7q11.23	MLXIPL	rs6975732-T	NR	2E-9		0.0187536	[0.013-0.025] unit decrease	Affymetrix [319769] (imputed)	N
1142	chr7	73056992	73056993	rs6975732	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	7q11.23	MLXIPL	rs6975732-T	NR	2E-8		0.0177613	[0.012-0.024] unit decrease	Affymetrix [321169] (imputed)	N
1142	chr7	73058016	73058017	rs7777102	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	7q11.23	NR	rs7777102-?	NR	4E-11		0.0368677	[0.026-0.048] unit decrease	Illumina [31978265] (imputed)	N
1142	chr7	73058016	73058017	rs7777102	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7q11.23	NR	rs7777102-A	NR	4E-90		0.118	unit increase	Affymetrix [at least 7091467] (imputed)	N
1142	chr7	73058016	73058017	rs7777102	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7q11.23	NR	rs7777102-A	0.899	5E-9	(Hispanic)	0.137	unit increase	Affymetrix [at least 7091467] (imputed)	N
1142	chr7	73058016	73058017	rs7777102	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7q11.23	NR	rs7777102-A	0.874	8E-84	(EA)	0.127	unit increase	Affymetrix [at least 7091467] (imputed)	N
1142	chr7	73058016	73058017	rs7777102	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7q11.23	NR	rs7777102-A	NR	1E-9		0.032	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1142	chr7	73058016	73058017	rs7777102	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7q11.23	NR	rs7777102-A	0.874	3E-9	(EA)	0.035	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1142	chr7	73059018	73059019	rs13239670	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	7q11.23	MLXIPL	rs13239670-T	NR	1E-10		0.0182634	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
1142	chr7	73059018	73059019	rs13239670	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	7q11.23	MLXIPL	rs13239670-T	NR	8E-11		0.0184957	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
1142	chr7	73060005	73060006	rs799160	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	7q11.23	NR	rs799160-T	NR	2E-12		0.0169	[0.012-0.022] unit increase	Affymetrix [9000000] (imputed)	N
1142	chr7	73060005	73060006	rs799160	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	7q11.23	NR	rs799160-T	NR	2E-70		0.0424	[0.038-0.047] unit increase	Affymetrix [9000000] (imputed)	N
1142	chr7	73060005	73060006	rs799160	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	7q11.23	NR	rs799160-T	NR	1E-11		0.0162	[0.011-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
1142	chr7	73060005	73060006	rs799160	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	7q11.23	NR	rs799160-T	NR	3E-12		0.0174	[0.013-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
1142	chr7	73060005	73060006	rs799160	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	7q11.23	NR	rs799160-T	NR	2E-19		0.0215	[0.017-0.026] unit increase	Affymetrix [9000000] (imputed)	N
1142	chr7	73060005	73060006	rs799160	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	7q11.23	NR	rs799160-T	NR	2E-9		0.0144	[0.0097-0.0191] unit increase	Affymetrix [9000000] (imputed)	N
1142	chr7	73060005	73060006	rs799160	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	Triglyceride levels	up to 23,508 African ancestry individuals, 4,649 Asian ancestry individuals, up to 77,047 European ancestry individuals, 6,705 Hispanic individuals	NA	7q11.23		rs799160-T	0.5016	3E-10	(EA)	0.0182	[0.013-0.024] unit increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1142	chr7	73066665	73066666	rs34659651	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Problematic alcohol use (MTAG)	972,915 European ancestry individuals	NA	7q11.23	NR	rs34659651-A	0.1786	5E-8		0.014983003	[0.0096-0.0204] unit increase	Affymetrix [10613246] (imputed)	N
1142	chr7	73066665	73066666	rs34659651	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol consumption (drinks per week) (MTAG)	972,915 European ancestry individuals	NA	7q11.23	NR	rs34659651-A	0.19	3E-8		0.012532386	[0.0081-0.0169] unit increase	Affymetrix [NR] (imputed)	N
1142	chr7	73067026	73067027	rs6956862	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	7q11.23	NR	rs6956862-G	NR	5E-30		0.0286	[0.024-0.033] unit increase	Affymetrix [9000000] (imputed)	N
1142	chr7	73067748	73067749	rs71537604	34441435	Corma-Gomez A	2021-08-20	Diagnostics (Basel)	A Genome-Wide Association Study on Liver Stiffness Changes during Hepatitis C Virus Infection Cure.	Liver stiffness changes at sustained virological response following antiviral therapy in HCV infection	242 European ancestry individuals	NA	7q11.23		rs71537604-T	0.071	7E-6		18.85	[10.81-26.9] unit decrease	Affymetrix [6939676] (imputed)	N
1142	chr7	73073419	73073420	rs185522560	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	7q11.23	NR	rs185522560-?	NR	5E-6		0.0078938	[0.0045-0.0113] unit decrease	Affymetrix [805426] (imputed)	N
1142	chr7	73073548	73073549	rs112238843	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	7q11.23	Intergenic	rs112238843-T	0.689	3E-9		0.0125	[0.0084-0.0166] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1142	chr7	73075780	73075781	rs117618901	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	7q11.23	Intergenic	rs117618901-T	0.0198	2E-8	(MTAG)	0.0337	[0.022-0.045] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1142	chr7	73084815	73084816	rs73702564	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	7q11.23	DNAJC30	rs73702564-T	0.039	7E-31	(DnaJ homolog subfamily C member 30, DNAJC30.7866.11.3)	0.72	[0.6-0.84] unit increase	Affymetrix [10572788] (imputed)	N
1142	chr7	73086453	73086454	rs13242693	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	7q11.23	NR	rs13242693-T	NR	9E-56		0.1032	[0.09-0.116] unit decrease	Affymetrix [9000000] (imputed)	N
1142	chr7	73086453	73086454	rs13242693	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	7q11.23	NR	rs13242693-T	NR	2E-9		0.0393	[0.026-0.052] unit increase	Affymetrix [9000000] (imputed)	N
1142	chr7	73086453	73086454	rs13242693	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	7q11.23	NR	rs13242693-T	NR	2E-16		0.0539	[0.041-0.067] unit decrease	Affymetrix [9000000] (imputed)	N
1142	chr7	73086453	73086454	rs13242693	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	7q11.23	NR	rs13242693-T	NR	2E-9		0.0393	[0.026-0.052] unit increase	Affymetrix [9000000] (imputed)	N
1142	chr7	73086453	73086454	rs13242693	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	7q11.23	NR	rs13242693-T	NR	1E-12		0.0466	[0.034-0.06] unit decrease	Affymetrix [9000000] (imputed)	N
1142	chr7	73086723	73086724	rs111331221	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	7q11.23	NR	rs111331221-G	NR	7E-12		0.0414	[0.03-0.053] unit decrease	Affymetrix [9000000] (imputed)	N
1142	chr7	73098455	73098456	rs1527454	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	7q11.23	NR	rs1527454-A	NR	9E-20		0.023	[0.018-0.028] unit increase	Affymetrix [9000000] (imputed)	N
1142	chr7	73098455	73098456	rs1527454	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	7q11.23	NR	rs1527454-A	NR	5E-17		0.0213	[0.016-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
1142	chr7	73107906	73107907	rs147323153	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	7q11.23	WBSCR22	rs147323153-A	NR	1E-8		0.0680966	[0.045-0.091] unit decrease	Affymetrix [321788] (imputed)	N
1142	chr7	73111503	73111504	rs4717804	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	7q11.23		rs4717804-A	0.0700245	3E-14		0.0602479	[0.045-0.076] unit increase	NR [11722792] (imputed)	N
1142	chr7	73111503	73111504	rs4717804	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	7q11.23		rs4717804-A	0.0700317	1E-11		0.0538624	[0.038-0.069] unit increase	NR [11722792] (imputed)	N
1142	chr7	73111503	73111504	rs4717804	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small LDL	115,082 European ancestry individuals	NA	7q11.23		rs4717804-A	0.0700317	4E-14		0.0617862	[0.046-0.078] unit increase	NR [11722792] (imputed)	N
1142	chr7	73111503	73111504	rs4717804	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium VLDL	115,082 European ancestry individuals	NA	7q11.23		rs4717804-A	0.0700317	8E-12		0.0558695	[0.04-0.072] unit increase	NR [11722792] (imputed)	N
1142	chr7	73111503	73111504	rs4717804	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium LDL	115,082 European ancestry individuals	NA	7q11.23		rs4717804-A	0.0700317	2E-12		0.0577229	[0.042-0.074] unit increase	NR [11722792] (imputed)	N
1142	chr7	73111503	73111504	rs4717804	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in LDL	115,082 European ancestry individuals	NA	7q11.23		rs4717804-A	0.0700317	7E-11		0.0538167	[0.038-0.07] unit increase	NR [11722792] (imputed)	N
1142	chr7	73111503	73111504	rs4717804	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large VLDL	115,082 European ancestry individuals	NA	7q11.23		rs4717804-A	0.0700317	2E-11		0.0546836	[0.039-0.071] unit increase	NR [11722792] (imputed)	N
1142	chr7	73111503	73111504	rs4717804	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large VLDL	115,082 European ancestry individuals	NA	7q11.23		rs4717804-A	0.0700317	7E-13		0.0583008	[0.042-0.074] unit increase	NR [11722792] (imputed)	N
1142	chr7	73111503	73111504	rs4717804	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large VLDL particles	115,082 European ancestry individuals	NA	7q11.23		rs4717804-A	0.0700317	6E-13		0.058169	[0.042-0.074] unit increase	NR [11722792] (imputed)	N
1142	chr7	73111503	73111504	rs4717804	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large VLDL particles	115,082 European ancestry individuals	NA	7q11.23		rs4717804-A	0.0700317	3E-12		0.0567381	[0.041-0.073] unit increase	NR [11722792] (imputed)	N
1142	chr7	73111503	73111504	rs4717804	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	7q11.23		rs4717804-A	0.0700317	4E-13		0.0589537	[0.043-0.075] unit increase	NR [11722792] (imputed)	N
1142	chr7	73111503	73111504	rs4717804	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	7q11.23		rs4717804-A	0.0700317	6E-13		0.0584179	[0.043-0.074] unit increase	NR [11722792] (imputed)	N
1142	chr7	73115200	73115201	rs41271241	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	7q11.23	NR	rs41271241-A	NR	8E-11		0.0298	[0.021-0.039] unit increase	Affymetrix [9000000] (imputed)	N
1142	chr7	73123472	73123473	rs72555385	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	7q11.23	STX1A	rs72555385-A	0.951024	8E-45		0.064988	[0.056-0.074] unit decrease	Affymetrix [NR] (imputed)	N
1142	chr7	73126342	73126343	rs55951611	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	7q11.23	NR	rs55951611-A	NR	4E-11		0.0382	[0.027-0.05] unit decrease	Affymetrix [9000000] (imputed)	N
1142	chr7	73131237	73131238	rs549107698	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	7q11.23	STX1A, MIR4284, ABHD11-AS1, WBSCR22, ABHD11, DNAJC30, VPS37D, MLXIPL, TBL2, BCL7B, BAZ1B, FZD9	rs549107698-?		8E-6	(heterogeneous)	0.464	[0.26-0.67] unit decrease	Illumina [1492601] (imputed)	N
1142	chr7	73131237	73131238	rs549107698	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	7q11.23	STX1A, MIR4284, ABHD11-AS1, WBSCR22, ABHD11, DNAJC30, VPS37D, MLXIPL, TBL2, BCL7B, BAZ1B, FZD9	rs549107698-?		7E-6	(additive)	0.45	[0.25-0.65] unit decrease	Illumina [1492601] (imputed)	N
1142	chr7	73131237	73131238	rs549107698	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	7q11.23	STX1A, MIR4284, ABHD11-AS1, WBSCR22, ABHD11, DNAJC30, VPS37D, MLXIPL, TBL2, BCL7B, BAZ1B, FZD9	rs549107698-?		6E-6	(dominant)	0.465	[NR] unit decrease	Illumina [1492601] (imputed)	N
1142	chr7	73133240	73133241	rs6951030	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	7q11.23	STX1A	rs6951030-G	NR	2E-8		0.0209513	[0.014-0.028] unit decrease	Affymetrix [321016] (imputed)	N
1142	chr7	73137107	73137108	rs555077255	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia	11,197 European ancestry low myopic cases, 21,416 European ancestry emmetropia controls	NA	7q11.23	NR	rs555077255-?	NR	4E-6		0.506775	[0.29-0.72] unit increase	NR [13958389] (imputed)	N
1143	chr7	73147992	73147992	rs112959129	30498476	Liu H	2018-11-15	Front Endocrinol (Lausanne)	Heritability and Genome-Wide Association Study of Plasma Cholesterol in Chinese Adult Twins.	Total cholesterol levels	139 Chinese ancestry dizygotic twin pairs	NA	7q11.23	ABHD11, AS1	rs112959129-?		2E-6				Illumina [7405822] (imputed)	N
1143	chr7	73147992	73147992	rs112959129	30498476	Liu H	2018-11-15	Front Endocrinol (Lausanne)	Heritability and Genome-Wide Association Study of Plasma Cholesterol in Chinese Adult Twins.	Low density lipoprotein cholesterol levels	139 Chinese ancestry dizygotic twin pairs	NA	7q11.23	ABHD11-AS1	rs112959129-?		1E-6				Illumina [7405822] (imputed)	N
1143	chr7	73149301	73149302	rs13233747	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	7q11.23	RN7SL265P, LINC00035	rs13233747-A	0.348296	7E-10		0.018052783	[0.012-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1143	chr7	73149301	73149302	rs13233747	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	7q11.23	RN7SL265P, LINC00035	rs13233747-A	0.348239	3E-18		0.020523489	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1143	chr7	73149301	73149302	rs13233747	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q11.23	NR	rs13233747-G	0.634967	1E-26				Affymetrix, Illumina [17210439] (imputed)	N
1143	chr7	73149301	73149302	rs13233747	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	7q11.23	NR	rs13233747-G	0.650845	1E-28		0.022365	[0.018-0.026] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1143	chr7	73162809	73162810	rs139441335	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	7q11.23	intergenic	rs139441335-A	0.969	2E-16		0.075	[0.057-0.093] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1143	chr7	73177697	73177698	rs13221668	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	7q11.23		rs13221668-C	0.56143	6E-13		0.020233203	[0.015-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1143	chr7	73186344	73186358	rs150264463	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	7q11.23	CLDN3	rs150264463-C	0.0939	1E-10		0.03997727	[0.028-0.052] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1143	chr7	73187951	73187952	rs4302704	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	7q11.23	CLDN3	rs4302704-C	0.5599	8E-19		0.03202601	[0.025-0.039] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1143	chr7	73260842	73260843	rs113500463	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	7q11.23		rs113500463-?	NR	8E-9				NR [~ 8900000] (imputed)	N
1144	chr7	73279481	73279482	rs13227841	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Asthma	4,284 Japanese ancestry female cases, 98,503 Japanese ancestry female controls	NA	7q11.23		rs13227841-C	0.680363399	2E-9		0.85710484	[0.814967284-0.901421068]	Illumina [8919992] (imputed)	N
1144	chr7	73301488	73301489	rs4717827	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	7q11.23	WBSCR28	rs4717827-G	NR	6E-9		0.0234382	[0.016-0.031] unit decrease	Affymetrix [321016] (imputed)	N
1144	chr7	73301488	73301489	rs4717827	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	7q11.23	NR	rs4717827-G	0.144518	3E-10		0.0277363	[0.019-0.036] unit decrease	NR [19129689] (imputed)	N
1144	chr7	73303741	73303742	rs113946216	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7q11.23		rs113946216-?	NR	9E-30				NR [~ 8900000] (imputed)	N
1144	chr7	73304635	73304636	rs12669267	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	7q11.23	NR	rs12669267-?	NR	5E-9				Affymetrix [~ 8270000] (imputed)	N
1144	chr7	73305258	73305258	rs10623840	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	7q11.23	NR	rs10623840-?	NR	4E-10	(CCL24)	0.47523	[0.33-0.62] unit decrease	Illumina [11901634] (imputed)	N
1144	chr7	73318285	73318286	rs13241670	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	7q11.23		rs13241670-C	NR	6E-9		0.0142	[0.0095-0.0189] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
1144	chr7	73318285	73318286	rs13241670	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	7q11.23	WBSCR28	rs13241670-C	0.7785	3E-8		0.1716	[0.11-0.23] mmHg decrease	Affymetrix [NR] (imputed)	N
1144	chr7	73319689	73319690	rs73144827	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	7q11.23		rs73144827-A	NR	3E-35		0.0201	[0.017-0.023] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1144	chr7	73319808	73319809	rs11770437	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	7q11.23		rs11770437-T	0.37835	2E-26		0.0221366	[0.018-0.026] unit decrease	Illumina [13479295] (imputed)	N
1144	chr7	73319808	73319809	rs11770437	33888516	Zheng T	2021-04-22	Gut	Genome-wide analysis of 944 133 individuals provides insights into the etiology of haemorrhoidal disease.	Haemorrhoidal disease	218,920 European ancestry cases, 725,213 European ancestry controls	NA	7q11.23	WBSCR28	rs11770437-?	0.3592	3E-18		0.96	[0.95-0.97]	Affymetrix, Illumina [8494288] (imputed)	N
1144	chr7	73319808	73319809	rs11770437	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	7q11.23	WBSCR28, ELN	rs11770437-?	NR	7E-29		0.03276048	[0.027-0.039] unit decrease	Illumina [27896057] (imputed)	N
1145	chr7	73424372	73424373	rs6943980	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta maximum area	31,908 individuals	NA	7q11.23		rs6943980-A	0.546012	2E-66		0.124594	[0.11-0.14] decrease	Affymetrix [NR]	N
1145	chr7	73428221	73428222	rs6974735	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta minimum area	35,110 individuals	NA	7q11.23		rs6974735-A	0.545205	3E-80		0.126134	[0.11-0.14] decrease	Affymetrix [NR]	N
1145	chr7	73443244	73443245	rs3823878	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	7q11.23	ELN	rs3823878-A	0.0616917130999832	3E-9		0.0066196	[NR] unit increase	Affymetrix [> 30000000] (imputed)	N
1145	chr7	73445788	73445789	rs884843	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Pulse pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	7q11.23	chr7mb73	rs884843-G	0.467191692	2E-6		0.15	[0.088-0.212] unit increase	Affymetrix [~ 9800000] (imputed)	N
1145	chr7	73474824	73474825	rs17855988	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	7q11.23		rs17855988-C	0.09	5E-9		5.83	z score increase	Affymetrix [9061022] (imputed)	N
1145	chr7	73474824	73474825	rs17855988	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Inguinal hernia	16,725 European ancestry cases, 428,356 European ancestry controls, 1,664 East Asian ancestry cases, 177,062 East Asian ancestry controls	NA	7q11.23		rs17855988-C	NR	4E-12		0.1428	[0.1-0.18] unit decrease	Affymetrix, Illumina [25841416] (imputed)	N
1145	chr7	73474824	73474825	rs17855988	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	7q11.23	NR	rs17855988-C	0.0935	2E-10				NR [9056863] (imputed)	N
1145	chr7	73474824	73474825	rs17855988	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7q11.23		rs17855988-?	NR	5E-20				NR [~ 8900000] (imputed)	N
1145	chr7	73480568	73480569	rs10949834	28800603	Arpawong TE	2017-08-11	PLoS One	Genetic variants specific to aging-related verbal memory: Insights from GWASs in a population-based cohort.	Verbal memory performance (residualized delayed recall change)	7,486 European ancestry individuals aged 50 years or older	6,898 European ancestry individuals aged 50 years or older	7q11.23	NR	rs10949834-A	NR	4E-6			unit decrease	Illumina [at least 1198956] (imputed)	N
1145	chr7	73483688	73483689	rs8326	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	7q11.23		rs8326-C	0.1291	2E-9		0.14290905	[0.093-0.193] mmHg decrease	Affymetrix, Illumina [242866] (imputed)	N
1145	chr7	73489642	73489643	rs1091815	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	7q11.23		rs1091815-A	NR	2E-8		0.0142	[0.0093-0.0191] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
1145	chr7	73490655	73490656	rs1091812	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	7q11.23		rs1091812-?	NR	3E-12				NR [~ 8900000] (imputed)	N
1145	chr7	73491211	73491212	rs1091811	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	NA	7q11.23	LIMK1	rs1091811-A	0.1687	2E-10		0.1745	[0.12-0.23] unit decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1145	chr7	73492034	73492035	rs78808004	32339537	Roberts V	2020-04-24	J Invest Dermatol	Genome wide association study identifies genetic associations with perceived age.	Youthful appearance (self-reported)	423,992 European ancestry individuals	NA	7q11.23	LIMK1	rs78808004-A	0.90438	3E-11		0.95169604	NR	Affymetrix [~ 9600000] (imputed)	N
1145	chr7	73513062	73513062	rs781990170	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	7q11.23	NR	rs781990170-D	0.785846	9E-11		0.015982	[0.011-0.021] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1146	chr7	73537901	73537902	rs193107685	30573655	Acosta-Herrera M	2018-12-20	Ann Rheum Dis	Genome-wide meta-analysis reveals shared new loci in systemic seropositive rheumatic diseases.	Systemic seropositive rheumatic diseases (Systemic sclerosis or systemic lupus erythematosus or rheumatoid arthritis or idiopathic inflammatory myopathies)	up to 4,595 European ancestry rheumatoid arthritis cases, up to 3,154 European ancestry systemic lupus erythematosus cases, up to 2,281 European ancestry systemic sclerosis cases, up to 1,674 European ancestry idiopathic inflammatory myopathy cases, 19,704 European ancestry controls	NA	7q11.23	LIMK1	rs193107685-C	NR	3E-9		1.52	[1.27-1.83]	Illumina [6450125] (imputed)	N
1146	chr7	73566676	73566677	rs150518861	29848360	Julia A	2018-05-30	Arthritis Res Ther	Genome-wide association study meta-analysis identifies five new loci for systemic lupus erythematosus.	Systemic lupus erythematosus	4,943 European ancestry cases, 8,483 European ancestry controls	NA	7q11.23	LAT2	rs150518861-A	NR	4E-8		1.66	[1.49-1.84]	Illumina [7110321] (imputed)	N
1146	chr7	73607942	73607943	rs10716716	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	7q11.23	NR	rs10716716-G	0.159	8E-10		1.151	[1.11-1.2]	Illumina [11270530] (imputed)	N
1146	chr7	73625572	73625573	rs76183995	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	7q11.23		rs76183995-A	NR	5E-10		0.0244	[0.017-0.032] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
1146	chr7	73629019	73629029	rs372942110	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	7q11.23	NR	rs372942110-T	0.008	6E-9		2.294	[2.02-2.57]	Illumina [11270530] (imputed)	N
1146	chr7	73631176	73631177	rs144269935	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	7q11.23	NR	rs144269935-G	NR	3E-10		0.0538	[0.037-0.07] unit increase	Affymetrix [9000000] (imputed)	N
1147	chr7	73697540	73697541	rs78290495	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	7q11.23	NR	rs78290495-T	0.965	2E-6		0.799	[0.71-0.89]	Illumina [11270530] (imputed)	N
1147	chr7	73727242	73727243	rs6964387	30134803	Matana A	2018-04-11	Mol Med	Genome-wide meta-analysis identifies novel loci associated with parathyroid hormone level.	Plasma parathyroid hormone levels	806 Korculan (founder/genetic isolate) individuals, 831 Vis (founder/genetic isolate) individuals, 959 Croatian ancestry individuals	NA	7q11.23	NR	rs6964387-?	NR	6E-6	(male)	0.9	[0.51-1.29] unit decrease	Illumina [7411206] (imputed)	N
1147	chr7	73751059	73751060	rs80243771	31476763	Otsuka I	2019-09-02	Neuropsychopharmacology	Genome-wide association studies identify polygenic effects for completed suicide in the Japanese population.	Age at suicide	719 Japanese ancestry individuals	NA	7q11.23	CLIP2	rs80243771-G	NR	1E-7		12.5	[7.84-17.16] unit decrease	Illumina [8810873] (imputed)	N
1147	chr7	73752698	73752699	rs574637	33816493	Cai R	2021-03-18	Front Cell Dev Biol	Genome-Wide Association Identifies Risk Pathways for SAPHO Syndrome.	SAPHO syndrome	49 Chinese ancestry cases, 121 Chinese ancestry controls	NA	7q11.23	CLIP2	rs574637-?	NR	4E-7		0.119	NR	Illumina [802276]	N
1148	chr7	73801309	73801310	rs34459814	32624584	Yousaf A	2020-07-05	Transl Psychiatry	Quantitative genome-wide association study of six phenotypic subdomains identifies novel genome-wide significant variants in autism spectrum disorder.	Autism spectrum disorders (social interaction)	2,509 individuals	NA	7q11.23	CLIP2	rs34459814-?	NR	3E-8		0.492	NR unit increase	Illumina [6900500] (imputed)	N
1148	chr7	73864112	73864112	rs111352217	34390503	Yang G	2021-08-14	Clin Pharmacol Ther	Genome-wide Association Study Identified Chromosome 8 Locus Associated with Medication-related Osteonecrosis of the Jaw.	Bisphosphonate-related osteonecrosis of the jaw in osteoporosis (oral bisphosphonate)	118 European ancestry cases, 1,251 European ancestry controls	NA	7q11.23		rs111352217-?	NR	8E-6		7.23	[3.04-17.19]	Illumina [126146] (imputed)	N
1148	chr7	73864692	73864692	rs201265220	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	7q11.23	intergenic	rs201265220-TTG	NR	9E-6	(EA)			Illumina [up to 11995908] (imputed)	N
1148	chr7	73869856	73869857	rs73135307	31476763	Otsuka I	2019-09-02	Neuropsychopharmacology	Genome-wide association studies identify polygenic effects for completed suicide in the Japanese population.	Age at suicide	719 Japanese ancestry individuals	NA	7q11.23	GTF2IRD1	rs73135307-G	NR	3E-8		12.3	[7.93-16.67] unit decrease	Illumina [8810873] (imputed)	N
1148	chr7	73910240	73910241	rs530634980	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	7q11.23	NR	rs530634980-T	0.016	5E-18		2.016	[1.86-2.17]	Illumina [11270530] (imputed)	N
1149	chr7	73925942	73925943	rs60668206	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	7q11.23	GTF2IRD1	rs60668206-C	NR	2E-8		0.0097221	[0.0064-0.0131] unit increase	Affymetrix [18485882] (imputed)	N
1149	chr7	73925942	73925943	rs60668206	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	7q11.23	GTF2IRD1	rs60668206-T	0.19744	3E-8		5.52	z score increase	Illumina [18485882] (imputed)	N
1149	chr7	73926111	73926112	rs2267828	26663301	Lessard CJ	2016-05-01	Arthritis Rheumatol	Identification of a Systemic Lupus Erythematosus Risk Locus Spanning ATG16L2, FCHSD2, and P2RY2 in Koreans.	Systemic lupus erythematosus	1,174 Korean ancestry cases, 4,246 Korean ancestry controls	739 Korean ancestry cases,  677 Chinese ancestry cases,  436 Korean ancestry controls, 709 Chinese ancestry controls	7q11.23	GTF2IRD1	rs2267828-?	NR	6E-8		1.2345679	[1.14-1.32]	Illumina [NR]	N
1149	chr7	73940977	73940978	rs73135369	27399966	Morris DL	2016-07-11	Nat Genet	Genome-wide association meta-analysis in Chinese and European individuals identifies ten new loci associated with systemic lupus erythematosus.	Systemic lupus erythematosus	1,659 Chinese ancestry cases, 3,398 Chinese ancestry controls, 4,036 European ancestry cases, 6,959 European ancestry controls	3,043 Chinese ancestry cases, 5,074 Chinese ancestry controls, 2,643 European ancestry cases, 9,032 European ancestry controls	7q11.23	GTF2IRD1-GTF2I	rs73135369-C	0.076	7E-13	(Chinese)	1.38	[1.26-1.51]	NR [6344733] (imputed)	N
1149	chr7	73940977	73940978	rs73135369	27399966	Morris DL	2016-07-11	Nat Genet	Genome-wide association meta-analysis in Chinese and European individuals identifies ten new loci associated with systemic lupus erythematosus.	Systemic lupus erythematosus	1,659 Chinese ancestry cases, 3,398 Chinese ancestry controls, 4,036 European ancestry cases, 6,959 European ancestry controls	3,043 Chinese ancestry cases, 5,074 Chinese ancestry controls, 2,643 European ancestry cases, 9,032 European ancestry controls	7q11.23	GTF2IRD1-GTF2I	rs73135369-C	0.022	9E-14		1.32	[1.23-1.42]	NR [6344733] (imputed)	N
1149	chr7	73964234	73964235	rs7793359	26379185	Garcia-Etxebarria K	2015-09-17	PLoS One	No Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity.	Severe influenza A (H1N1) infection	49 European ancestry severe cases, 549 European ancestry population controls	NA	7q11.23	GTF2IRD1	rs7793359-?	0.002788	2E-16		37.37	[9.45-147.8]	Affymetrix [547296]	N
1149	chr7	73993688	73993689	rs186053156	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7q11.23		rs186053156-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1149	chr7	73995033	73995034	rs13244581	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	7q11.23	NR	rs13244581-C	0.092	2E-20		0.667	[0.58-0.75]	Illumina [11270530] (imputed)	N
1149	chr7	74002322	74002323	rs111914893	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	7q11.23	GTF2IRD1	rs111914893-C	0.947473	1E-9		0.0278828	[0.019-0.037] unit decrease	Affymetrix [NR] (imputed)	N
1149	chr7	74003709	74003710	rs116991837	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	7q11.23	NR	rs116991837-A	0.016	4E-15		2.654	[2.41-2.9]	Illumina [11270530] (imputed)	N
1149	chr7	74020342	74020343	rs150724213	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	7q11.23	NR	rs150724213-A	0.01	3E-15		3.882	[3.55-4.22]	Illumina [11270530] (imputed)	N
1149	chr7	74026152	74026153	rs113066392	33310728	Ha E	2020-12-11	Ann Rheum Dis	Large-scale meta-analysis across East Asian and European populations updated genetic architecture and variant-driven biology of rheumatoid arthritis, identifying 11 novel susceptibility loci.	Rheumatoid arthritis	14,361 European ancestry cases, 43,923 European ancestry controls, 8,267 East Asian ancestry cases, 244,741 East Asian ancestry controls	NA	7q11.23		rs113066392-A	NR	1E-20		1.43	[1.33-1.55]	NR [13810676] (imputed)	N
1149	chr7	74026152	74026153	rs113066392	32723749	Kwon YC	2020-07-28	Ann Rheum Dis	Genome-wide association study in a Korean population identifies six novel susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis	4,068 Korean ancestry cases, 36,487 Korean ancestry controls	NA	7q11.23	GTF2IRD1	rs113066392-?		1E-20		1.43	[1.33-1.55]	Illumina [NR] (imputed)	N
1149	chr7	74032650	74032651	rs7800325	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	7q11.23	NR	rs7800325-T	0.826	1E-280		0.449	[0.41-0.49]	Illumina [11270530] (imputed)	N
1149	chr7	74033599	74033600	rs73366469	33493351	Song Q	2021-01-25	Rheumatology (Oxford)	Genome-wide association study on Northern Chinese identifies KLF2, DOT1L and STAB2 associated with systemic lupus erythematosus.	Systemic lupus erythematosus	512 Han Chinese ancestry cases, 994 Han Chinese ancestry controls	NA	7q11.23	NCF1	rs73366469-C	0.18	2E-26		2.62	[2.44-2.80]	Illumina [6832025] (imputed)	N
1149	chr7	74033599	74033600	rs73366469	33493351	Song Q	2021-01-25	Rheumatology (Oxford)	Genome-wide association study on Northern Chinese identifies KLF2, DOT1L and STAB2 associated with systemic lupus erythematosus.	Systemic lupus erythematosus	4,734 Chinese ancestry cases, 9,425 Chinese ancestry controls	NA	7q11.23	NCF1	rs73366469-C	0.18	3E-81		2.52	[2.43-2.61]	Illumina [at least 3860730] (imputed)	N
1149	chr7	74033599	74033600	rs73366469	32771030	Tangtanatakul P	2020-08-08	Arthritis Res Ther	Meta-analysis of genome-wide association study identifies FBN2 as a novel locus associated with systemic lupus erythematosus in Thai population.	Systemic lupus erythematosus	487 Thai cases, 1,606 Thai controls	405 Thai cases, 1,590 Thai controls	7q11.23	RP5-1186P10.2, GTF2I	rs73366469-G	0.14	2E-11		1.7317	[NR]	Illumina [421909] (imputed)	N
1149	chr7	74033599	74033600	rs73366469	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	7q11.23	GTF2IRD1, GTF2I	rs73366469-?	NR	3E-14		1.22	[1.15-1.30]	Illumina [at least 5000000] (imputed)	N
1149	chr7	74039668	74039669	rs67955681	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	7q11.23	NR	rs67955681-T	0.157	4E-10		0.849	[0.8-0.9]	Illumina [11270530] (imputed)	N
1150	chr7	74060454	74060455	rs13243640	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	7q11.23		rs13243640-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1150	chr7	74073589	74073590	rs73137144	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	7q11.23	NR	rs73137144-A	0.807173	4E-11		0.0180338	[0.013-0.023] unit increase	NR [NR]	N
1150	chr7	74076013	74076019	rs143244236	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	7q11.23		rs143244236-A	NR	2E-10		0.0195	[0.013-0.026] unit decrease	Affymetrix, Illumina [20529698] (imputed)	N
1150	chr7	74076492	74076493	rs13238568	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	7q11.23	NR	rs13238568-G	0.381	2E-9		0.0248	[0.017-0.033] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1150	chr7	74076492	74076493	rs13238568	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	7q11.23		rs13238568-?	NR	5E-25				NR [~ 8900000] (imputed)	N
1150	chr7	74083229	74083230	rs4717905	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (age at voice breaking MTAG)	205,354 European ancestry individuals	NA	7q11.23		rs4717905-C	NR	4E-8		0.020739058	[0.013-0.028] years increase	NR [7400000] (imputed)	N
1150	chr7	74087464	74087465	rs68008267	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	7q11.23	NR	rs68008267-T	0.025	3E-12		1.406	[1.31-1.5]	Illumina [11270530] (imputed)	N
1150	chr7	74088892	74088893	rs35473599	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	7q11.23		rs35473599-A	NR	3E-9		0.0553	[0.037-0.074] unit increase	Affymetrix, Illumina [25845091] (imputed)	N
1150	chr7	74089818	74089819	rs36044436	30940143	Zhu Z	2019-04-02	Respir Res	Genetic overlap of chronic obstructive pulmonary disease and cardiovascular disease-related traits: a large-scale genome-wide cross-trait analysis.	Chronic obstructive pulmonary disease or high blood pressure (pleiotropy)	12,550 European and unknown ancestry chronic obstructive pulmonary disease cases, 46,368 European and unknown ancestry controls, 144,793 European ancestry high blood pressure cases, 313,761 European ancestry controls	NA	7q11.23	GTF2I, LOC101926943	rs36044436-?	NR	5E-11				Affymetrix [up to 7325140] (imputed)	N
1150	chr7	74095968	74095969	rs113544043	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	7q11.23		rs113544043-A	NR	3E-8		0.0301	[0.02-0.041] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
1150	chr7	74098055	74098056	rs7794284	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	7q11.23		rs7794284-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1150	chr7	74098621	74098622	rs79171842	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	7q11.23	NR	rs79171842-A	0.99	3E-23		0.405	[0.23-0.58]	Illumina [11270530] (imputed)	N
1150	chr7	74098948	74098949	rs2527366	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	7q11.23		rs2527366-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1150	chr7	74099746	74099747	rs138745417	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	7q11.23	NR	rs138745417-?	NR	5E-14				Affymetrix [~ 8270000] (imputed)	N
1150	chr7	74101908	74101909	rs6964833	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	7q11.23	GTF2I	rs6964833-T	0.75	5E-12		0.04	[0.028-0.052] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
1150	chr7	74102894	74102895	rs150300171	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	7q11.23	GTF2I	rs150300171-A	0.953797	9E-11		0.0294484	[0.021-0.038] unit increase	Affymetrix [NR] (imputed)	N
1150	chr7	74107373	74107374	rs34324971	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	7q11.23	GTF2I	rs34324971-A	0.1864	2E-9		0.1199	[0.081-0.159] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1150	chr7	74108134	74108135	rs67755137	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	7q11.23	NR	rs67755137-G	0.8098	2E-8		0.0333	[0.022-0.045] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
1150	chr7	74108248	74108249	rs35275911	32589924	Bi W	2020-06-23	Am J Hum Genet	A Fast and Accurate Method for Genome-Wide Time-to-Event Data Analysis and Its Application to UK Biobank.	Essential hypertension (time to event)	76,566 British ancestry cases, 206,305 British ancestry controls	NA	7q11.23	LOC101926943	rs35275911-?	NR	3E-8				NR [~ 24000000] (imputed)	N
1150	chr7	74108438	74108439	rs143176121	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	7q11.23	NR	rs143176121-T	0.98	2E-66		0.292	[0.15-0.43]	Illumina [11270530] (imputed)	N
1150	chr7	74110704	74110705	rs74910854	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	7q11.23	GTF2I	rs74910854-A	0.932984	5E-11		0.0236685	[0.017-0.031] unit increase	NR [13737936] (imputed)	N
1150	chr7	74110704	74110705	rs74910854	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	7q11.23		rs74910854-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1150	chr7	74110704	74110705	rs74910854	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	7q11.23	GTF2I	rs74910854-G	0.07	3E-9		1.1	[1.07-1.13]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1150	chr7	74110704	74110705	rs74910854	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	7q11.23	NR	rs74910854-G	0.0674	5E-6	(EA)	0.0607	[0.034-0.087] unit increase	Illumina [~ 11800000] (imputed)	N
1150	chr7	74112280	74112281	rs2465936	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	7q11.23	Intergenic	rs2465936-G	0.0965	1E-8		0.0219	[0.014-0.029] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1150	chr7	74121005	74121005	rs377080180	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	7q11.23		rs377080180-?	NR	3E-10		0.0250922	[0.017-0.033] unit increase	Affymetrix [20259828] (imputed)	N
1150	chr7	74122853	74122854	rs7795281	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	148,164 European ancestry individuals	NA	7q11.23	GTF2I	rs7795281-A	0.76	3E-8	(BMI-adjusted)	0.028	[0.018-0.038] unit increase	Affymetrix, Illumina, Perlegen [10019203] (imputed)	N
1150	chr7	74122856	74122857	rs7795282	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	7q11.23	NR	rs7795282-?	NR	5E-12				Affymetrix [~ 8270000] (imputed)	N
1150	chr7	74126033	74126034	rs117026326	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	7q11.23	LOC101926943	rs117026326-T	0.175	2E-298		2.137	[2.1-2.18]	Illumina [11270530] (imputed)	N
1150	chr7	74126033	74126034	rs117026326	27503288	Song IW	2016-08-08	Hum Genet	Identification of susceptibility gene associated with female primary Sjogren's syndrome in Han Chinese by genome-wide association study.	Sjogren's syndrome	242 Han Chinese ancestry cases, 1,444 Han Chinese ancestry controls	178 Han Chinese ancestry cases, 14,432 Han Chinese ancestry controls	7q11.23	GTF2I	rs117026326-T	0.119	1E-15		1.982	[1.673-2.348]	Affymetrix [548825] (imputed)	N
1150	chr7	74126033	74126034	rs117026326	24097066	Li Y	2013-10-06	Nat Genet	A genome-wide association study in Han Chinese identifies a susceptibility locus for primary Sjogren's syndrome at 7q11.23.	Sjogren's syndrome	542 Han Chinese ancestry cases, 1,050 Han Chinese ancestry controls	1,303 Han Chinese ancestry cases, 2,727 Han Chinese ancestry controls	7q11.23	GTF2IRD1, GTF2I	rs117026326-T	0.1501	1E-53		2.2	[1.99-2.42]	Affymetrix [556134]	N
1150	chr7	74133928	74133929	rs2718277	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	7q11.23	Intergenic	rs2718277-T	0.0832	8E-12	(MTAG)	0.0205	[0.015-0.026] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1150	chr7	74133928	74133929	rs2718277	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	7q11.23		rs2718277-T	0.0832	3E-8		0.0142	[0.0091-0.0193] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1150	chr7	74133928	74133929	rs2718277	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	7q11.23	Intergenic	rs2718277-T	0.0832	1E-10	(MTAG)	0.0154	[0.011-0.02] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1150	chr7	74134910	74134911	rs35005436	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	7q11.23		rs35005436-?	NR	1E-21				NR [~ 8900000] (imputed)	N
1150	chr7	74134910	74134911	rs35005436	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	7q11.23	GTF2I, LOC101926943, GTF2IRD2	rs35005436-C	0.155	3E-10		1.06	[1.04-1.08]	Illumina [34740186] (imputed)	N
1151	chr7	74195634	74195635	rs587680541	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	7q11.23	NR	rs587680541-T	0.014	4E-62		4.14	[3.97-4.31]	Illumina [11270530] (imputed)	N
1151	chr7	74196184	74196185	rs199789198	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	7q11.23	NR	rs199789198-A	0.073	3E-194		3.098	[3.02-3.17]	Illumina [11270530] (imputed)	N
1151	chr7	74196243	74196244	rs800980	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	7q11.23	NR	rs800980-T	NR	1E-10		0.0211	[0.015-0.028] unit decrease	Affymetrix [9000000] (imputed)	N
1151	chr7	74236722	74236723	rs801011	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	7q11.23	GTF2IRD2	rs801011-T	0.704794	2E-25		0.026072944	[0.021-0.031] unit increase	Affymetrix [93095623] (imputed)	N
1151	chr7	74236722	74236723	rs801011	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q11.23	NR	rs801011-T	0.692928	5E-29				Affymetrix, Illumina [22063850] (imputed)	N
1151	chr7	74236722	74236723	rs801011	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	7q11.23	NR	rs801011-T	0.700774	1E-31		0.026322	[0.022-0.031] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
1151	chr7	74236722	74236723	rs801011	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	7q11.23	GTF2IRD2	rs801011-T	NR	2E-12		0.0326569	[0.024-0.042] unit increase	Affymetrix [16832071] (imputed)	N
1151	chr7	74236722	74236723	rs801011	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	7q11.23	GTF2IRD2	rs801011-T	0.7081	5E-18		0.0351175	[0.027-0.043] unit increase	Affymetrix [~ 2500000] (imputed)	N
1151	chr7	74277082	74277083	rs377629160	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	7q11.23	NR	rs377629160-T	0.1887	6E-7	(EA)	0.0431	[0.026-0.06] unit increase	Illumina [~ 11800000] (imputed)	N
1151	chr7	74283219	74283220	rs801076	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA		NR	rs801076-T	0.291276	4E-10				Affymetrix, Illumina [23472807] (imputed)	N
1151	chr7	74297550	74297551	rs2108321	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	7q11.23	STAG3L2	rs2108321-A	0.284937	1E-13		0.01870355	[0.014-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1151	chr7	74298376	74298377	rs1062273	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	7q11.23		rs1062273-C	NR	3E-11		0.0179	[0.013-0.023] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
1151	chr7	74300889	74300890	rs2530482	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	7q11.23	STAG3L2	rs2530482-C	0.285277	2E-10		0.015912391	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1151	chr7	74300889	74300890	rs2530482	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	7q11.23	NR	rs2530482-C	0.285893	4E-11		0.015275	[0.011-0.02] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1152	chr7	74331332	74331333	rs75518008	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	7q11.23	PMS2P5	rs75518008-T	0.227846	3E-12		0.01991552	[0.014-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1152	chr7	74359357	74359358	rs1637365	34234117	Adedokun B	2021-07-07	Nat Commun	Cross-ancestry GWAS meta-analysis identifies six breast cancer loci in African and European ancestry women.	Breast cancer (estrogen-receptor negative)	21,468 European ancestry cases, 105,974 European ancestry controls	NA	7q11.23		rs1637365-T	0.28	9E-7		1.07	[1.04-1.1]	Affymetrix, Illumina [NR] (imputed)	N
1152	chr7	74359357	74359358	rs1637365	34234117	Adedokun B	2021-07-07	Nat Commun	Cross-ancestry GWAS meta-analysis identifies six breast cancer loci in African and European ancestry women.	Breast cancer (estrogen-receptor negative)	2,636 African ancestry cases, 10,193 African ancestry controls, 21,468 European ancestry cases, 105,974 European ancestry controls	NA	7q11.23		rs1637365-T	0.32	1E-8		1.08	[1.05-1.11]	Affymetrix, Illumina [NR] (imputed)	N
1152	chr7	74359357	74359358	rs1637365	34234117	Adedokun B	2021-07-07	Nat Commun	Cross-ancestry GWAS meta-analysis identifies six breast cancer loci in African and European ancestry women.	Breast cancer	9,241 African ancestry cases, 10,193 African ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	NA	7q11.23		rs1637365-T	0.31	4E-7		1.04	[1.02-1.05]	Affymetrix, Illumina [NR] (imputed)	N
1152	chr7	74359357	74359358	rs1637365	34234117	Adedokun B	2021-07-07	Nat Commun	Cross-ancestry GWAS meta-analysis identifies six breast cancer loci in African and European ancestry women.	Breast cancer	122,977 European ancestry cases, 105,974 European ancestry controls	NA	7q11.23		rs1637365-T	0.28	3E-6		1.04	[1.02-1.05]	Affymetrix, Illumina [NR] (imputed)	N
1152	chr7	74402205	74402206	rs35525401	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	7q11.23	GATSL1	rs35525401-T	0.207139	9E-10		0.017336883	[0.012-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1153	chr7	74488774	74488775	rs6460094	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	7q11.23	NR	rs6460094-?	NR	8E-15				Affymetrix [~ 8270000] (imputed)	N
1156	chr7	74844192	74844193	rs868975575	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA		NR	rs868975575-?	NR	6E-12				Affymetrix [~ 8270000] (imputed)	N
1157	chr7	75044430	75044431	rs236650	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	7q11.23		rs236650-T	NR	4E-8		0.0133	[0.0086-0.018] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
1157	chr7	75044829	75044830	rs236651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	7q11.23		rs236651-G	0.426147	1E-8		0.0236606	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
1157	chr7	75044829	75044830	rs236651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	7q11.23		rs236651-G	0.426147	1E-8		0.0232468	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
1157	chr7	75044829	75044830	rs236651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	7q11.23		rs236651-G	0.426147	4E-8		0.0225894	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
1157	chr7	75044829	75044830	rs236651	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	7q11.23		rs236651-A	NR	4E-8		0.0133	[0.0086-0.018] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
1157	chr7	75044829	75044830	rs236651	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	7q11.23		rs236651-A	NR	1E-12		0.0168	[0.012-0.022] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
1157	chr7	75044829	75044830	rs236651	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	7q11.23	POM121C	rs236651-G	0.425627	9E-11		0.0026085	[0.0018-0.0034] unit decrease	Affymetrix [13995440] (imputed)	N
1157	chr7	75050085	75050086	rs236660	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	7q11.23		rs236660-C	NR	1E-26		0.0262	[0.021-0.031] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1157	chr7	75050085	75050086	rs236660	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	7q11.23		rs236660-C	0.57	1E-15				NR [NR] (imputed)	N
1157	chr7	75050085	75050086	rs236660	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	High density lipoprotein cholesterol levels	392,965 European ancestry individuals	NA	7q11.23		rs236660-C	0.57	7E-7		0.008	mmol/L decrease	NR [NR] (imputed)	N
1157	chr7	75050085	75050086	rs236660	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	7q11.23		rs236660-C	0.57	2E-19		0.014	% increase	NR [NR] (imputed)	N
1157	chr7	75050085	75050086	rs236660	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Aspartate aminotransferase levels	424,778 European ancestry individuals	NA	7q11.23		rs236660-C	0.57	6E-8		0.011	U/L increase	NR [NR] (imputed)	N
1157	chr7	75050085	75050086	rs236660	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Alanine aminotransferase levels	429,203 European ancestry individuals	NA	7q11.23		rs236660-C	0.57	3E-11		0.013	U/L increase	NR [NR] (imputed)	N
1157	chr7	75050085	75050086	rs236660	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		7q11.23	POM121C	rs236660-T	0.428913	9E-24		0.0144693	[0.012-0.017] unit decrease	Affymetrix [12370749]	N
1157	chr7	75059110	75059111	rs6979377	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	7q11.23	NR	rs6979377-?	NR	3E-20				Affymetrix [~ 8270000] (imputed)	N
1157	chr7	75059330	75059331	rs236670	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	7q11.23	POM121C, PMS2L3	rs236670-C	0.0050	3E-6	(Diet protein )	0.03	[NR] %energy increase	Illumina [899892]	N
1157	chr7	75061418	75061419	rs236671	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	7q11.23		rs236671-G	NR	6E-18		0.0195	[0.015-0.024] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
1157	chr7	75061768	75061769	rs6944634	30642433	Timmers PR	2019-01-15	Elife	Genomics of 1 million parent lifespans implicates novel pathways and common diseases and distinguishes survival chances.	Parental lifespan	at least 500,193 European ancestry offspring	NA	7q11.23	POM121C	rs6944634-C	0.782	1E-6		0.0246	[0.015-0.034] unit increase	NR [up to 9000000] (imputed)	N
1157	chr7	75061768	75061769	rs6944634	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	7q11.23	NA	rs6944634-C	0.7944	8E-25		0.0209	[0.017-0.025] unit decrease	NR [~ 27400000] (imputed)	N
1157	chr7	75069161	75069162	rs59967197	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	7q11.23		rs59967197-A	NR	5E-17		0.0187	[0.014-0.023] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1157	chr7	75071120	75071121	rs236607	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	7q11.23		rs236607-C	0.436923	1E-8		0.0233802	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
1157	chr7	75079054	75079055	rs587621258	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	7q11.23	NR	rs587621258-A	0.008	2E-7		1.854	[1.62-2.09]	Illumina [11270530] (imputed)	N
1157	chr7	75081417	75081418	rs58862095	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	7q11.23		rs58862095-?	NR	5E-31				NR [~ 8900000] (imputed)	N
1157	chr7	75095477	75095478	rs35718925	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	7q11.23		rs35718925-T	NR	7E-11		0.0151	[0.011-0.02] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1157	chr7	75095477	75095478	rs35718925	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	7q11.23		rs35718925-T	NR	1E-11		0.0158	[0.011-0.02] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
1157	chr7	75095477	75095478	rs35718925	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	7q11.23		rs35718925-T	NR	3E-10		0.0153	[0.011-0.02] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1157	chr7	75097487	75097488	rs6963105	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	7q11.23	POM121C	rs6963105-A	0.4348	1E-11		0.1779	[0.13-0.23] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1157	chr7	75101706	75101707	rs62477685	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	7q11.23	NR	rs62477685-T	0.4196	8E-15		0.019495789	[0.015-0.024] unit decrease	Affymetrix [10549349] (imputed)	N
1158	chr7	75147800	75147801	rs794375	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	7q11.23	PMS2P3	rs794375-T	0.57276	1E-11		0.0142188	[0.01-0.018] unit decrease	NR [16516521] (imputed)	N
1158	chr7	75147800	75147801	rs794375	33563987	Tyrrell J	2021-02-09	Nat Commun	Genetic predictors of participation in optional components of UK Biobank.	Acceptance of an invitation to participate in a mental health questionnaire	146,074 European ancestry cases, 148,713 European ancestry controls	NA	7q11.23	NR	rs794375-T	0.57	2E-8		0.98	[0.97, 0.98]	Affymetrix [39302896] (imputed)	N
1158	chr7	75147800	75147801	rs794375	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	7q11.23	Intergenic	rs794375-T	0.5724	9E-9	(MTAG)	0.0134	[0.0089-0.0179] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1158	chr7	75150311	75150312	rs1167821	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	7q11.23	NA	rs1167821-A	0.5535	9E-26		0.0201	[0.016-0.024] unit decrease	NR [~ 27400000] (imputed)	N
1158	chr7	75150311	75150312	rs1167821	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	7q11.23	NA	rs1167821-A	0.5535	9E-26		0.0201	[0.016-0.024] unit decrease	NR [~ 27400000] (imputed)	N
1158	chr7	75161415	75161416	rs112661041	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	7q11.23	NR	rs112661041-G	0.898538	2E-8		0.0183988	[0.012-0.025] unit increase	NR [NR]	N
1158	chr7	75163168	75163169	rs1167827	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	7q11.23		rs1167827-A	0.4285	3E-14		0.17835498	[0.13-0.23] mmHg decrease	Affymetrix, Illumina [242865] (imputed)	N
1158	chr7	75163168	75163169	rs1167827	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	7q11.23		rs1167827-A	0.4283	2E-8		0.09403458	[0.06-0.128] mmHg decrease	Affymetrix, Illumina [242866] (imputed)	N
1158	chr7	75163168	75163169	rs1167827	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	7q11.23		rs1167827-A	0.4282	3E-9		0.088049315	[0.058-0.118] mmHg decrease	Affymetrix, Illumina [242866] (imputed)	N
1158	chr7	75163168	75163169	rs1167827	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7q11.23		rs1167827-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1158	chr7	75163168	75163169	rs1167827	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	7q11.23	NR	rs1167827-A	NR	3E-12		0.019	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
1158	chr7	75163168	75163169	rs1167827	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	7q11.23	Intergenic	rs1167827-A	0.4353	2E-9	(MTAG)	0.0109	[0.0074-0.0144] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1158	chr7	75163168	75163169	rs1167827	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	7q11.23	Intergenic	rs1167827-A	0.4357	1E-18	(MTAG)	0.0147	[0.011-0.018] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1158	chr7	75163168	75163169	rs1167827	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	7q11.23		rs1167827-A	0.4347	3E-13		0.0104	[0.0077-0.0131] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1158	chr7	75163168	75163169	rs1167827	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	7q11.23	Intergenic	rs1167827-A	0.4347	2E-18	(MTAG)	0.0116	[0.0091-0.0141] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1158	chr7	75163168	75163169	rs1167827	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	7q11.23	HIP1	rs1167827-G	0.54	1E-10		0.02	[0.014-0.026] unit increase	Illumina [6108953] (imputed)	N
1158	chr7	75163168	75163169	rs1167827	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	7q11.23	HIP1	rs1167827-G	0.5626	8E-7		0.021	[0.013-0.029] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1158	chr7	75163168	75163169	rs1167827	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	7q11.23	HIP1	rs1167827-G	0.5514	6E-6	(men)	0.0289	[0.016-0.041] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1158	chr7	75163168	75163169	rs1167827	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	7q11.23	HIP1	rs1167827-?	NR	4E-7				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1158	chr7	75163168	75163169	rs1167827	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	7q11.23	HIP1	rs1167827-?	NR	2E-6	(men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1158	chr7	75163168	75163169	rs1167827	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	7q11.23	HIP1	rs1167827-G	0.5626	5E-8		0.0207	[0.013-0.028] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1158	chr7	75163168	75163169	rs1167827	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	7q11.23	HIP1	rs1167827-G	0.5626	3E-7	(men)	0.0281	[0.017-0.039] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1158	chr7	75163168	75163169	rs1167827	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	7q11.23	HIP1	rs1167827-A	0.4293	2E-7				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1158	chr7	75163168	75163169	rs1167827	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in non-smokers	77,279 European ancestry women, 47,280 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	7q11.23	HIP1	rs1167827-A	0.4293	2E-7		0.0218	[0.014-0.03] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1158	chr7	75163168	75163169	rs1167827	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	7q11.23	HIP1	rs1167827-A	0.4293	6E-8		0.0199	[0.013-0.027] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1158	chr7	75163168	75163169	rs1167827	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	7q11.23	HIP1	rs1167827-A	0.4293	5E-6	(men)	0.023	[0.013-0.033] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1158	chr7	75163168	75163169	rs1167827	26961502	Wood AR	2016-03-10	Diabetologia	Variants in the FTO and CDKAL1 loci have recessive effects on risk of obesity and type 2 diabetes, respectively.	Body mass index	29,925 British ancestry cases, 89,763 British ancestry controls	NA	7q11.23	HIP1	rs1167827-G	NR	2E-6	(additive model)	0.02	[0.012-0.028] unit increase	NR [9288881] (imputed)	N
1158	chr7	75163168	75163169	rs1167827	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	7q11.23	NR	rs1167827-A	0.441576929328427	1E-12		0.020421537	unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1158	chr7	75163168	75163169	rs1167827	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	7q11.23	HIP1	rs1167827-G	0.557	2E-10		0.02	[0.014-0.026] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1158	chr7	75163168	75163169	rs1167827	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	7q11.23	HIP1	rs1167827-G	0.553	6E-10	(EA)	0.02	[0.014-0.027] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1158	chr7	75163168	75163169	rs1167827	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	7q11.23	HIP1	rs1167827-G	0.548	9E-8	(EA, men)	0.023	[0.015-0.032] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1158	chr7	75167224	75167225	rs1167832	28957384	Kim SK	2017-09-28	PLoS One	Two genetic loci associated with ankle injury.	Ankle injury	1,421 European ancestry cases, 154 Hispanic/Latino cases, 121 East Asian ancestry cases, 81,843 European ancestry controls, 8,406 Hispanic/Latino controls, 7,397 East Asian ancestry controls	NA	7q11.23	NR	rs1167832-?	NR	4E-6		1.2968488		Affymetrix [8183964] (imputed)	N
1158	chr7	75173179	75173180	rs1167796	19838193	Han JW	2009-10-18	Nat Genet	Genome-wide association study in a Chinese Han population identifies nine new susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	1,047 Han Chinese ancestry cases, 1,205 Han Chinese ancestry controls	3,152 Han Chinese ancestry cases, 7,050 Han Chinese ancestry controls	7q11.23	NR	rs1167796-G	0.71	2E-8		1.2	[1.12-1.28]	Illumina [493955]	N
1158	chr7	75176195	75176196	rs1167800	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting insulin	50,404 European ancestry women	NA	7q11.23	HIP1	rs1167800-A	0.541908	2E-6		0.017357	[0.01-0.024] unit increase	Affymetrix, Illumina [8700000] (imputed)	N
1158	chr7	75176195	75176196	rs1167800	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting insulin	47,806 European ancestry men	NA	7q11.23	HIP1	rs1167800-A	0.541908	3E-6		0.017705	[0.01-0.025] unit increase	Affymetrix, Illumina [8700000] (imputed)	N
1158	chr7	75176195	75176196	rs1167800	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting insulin	105,056 European ancestry individuals	NA	7q11.23	HIP1	rs1167800-A	0.541908	2E-11		0.017221	[0.012-0.022] unit increase	Affymetrix, Illumina [8700000] (imputed)	N
1158	chr7	75176195	75176196	rs1167800	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	7q11.23	Intergenic	rs1167800-G	0.4289	4E-16		0.0186	[0.014-0.023] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1158	chr7	75176384	75176385	rs1167802	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	7q11.23	NR	rs1167802-?	NR	3E-10				Affymetrix [~ 8270000] (imputed)	N
1158	chr7	75179701	75179702	rs34565004	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	7q11.23	NR	rs34565004-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
1158	chr7	75185984	75185985	rs794368	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	7q11.23	NR	rs794368-A	0.567	2E-26		1.185	[1.15-1.22]	Illumina [11270530] (imputed)	N
1158	chr7	75188680	75188681	rs77009341	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	7q11.23	NR	rs77009341-C	0.037	6E-62		2.089	[2-2.18]	Illumina [11270530] (imputed)	N
1158	chr7	75195088	75195089	rs794358	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	7q11.23		rs794358-?	NR	8E-10				NR [~ 8900000] (imputed)	N
1158	chr7	75195214	75195215	rs57496717	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Large artery stroke	350 Indian ancestry cases, 2,154 Indian ancestry controls	NA	7q11.23		rs57496717-?	NR	2E-6		1.0844812	[1.04894521262552-1.12122113563501]	Illumina [up to 7827597] (imputed)	N
1158	chr7	75209950	75209951	rs139110493	26663301	Lessard CJ	2016-05-01	Arthritis Rheumatol	Identification of a Systemic Lupus Erythematosus Risk Locus Spanning ATG16L2, FCHSD2, and P2RY2 in Koreans.	Systemic lupus erythematosus	1,174 Korean ancestry cases, 4,246 Korean ancestry controls	739 Korean ancestry cases,  677 Chinese ancestry cases,  436 Korean ancestry controls, 709 Chinese ancestry controls	7q11.23	HIP1	rs139110493-?	NR	1E-12		2.48	1.93-3.19	Illumina [NR]	N
1158	chr7	75211413	75211414	rs237238	21529783	Heath AC	2011-04-27	Biol Psychiatry	A quantitative-trait genome-wide association study of alcoholism risk in the community: findings and implications.	Alcoholism (12-month weekly alcohol consumption)	2,062 European ancestry alcohol dependence cases, 6,692 European ancestry controls	3,393 European ancestry individuals	7q11.23	HIP1	rs237238-A	0.07	7E-6		0.156	[NR] unit increase	Illumina [~ 300000]	N
1159	chr7	75247328	75247329	rs1186222	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	7q11.23	HIP1	rs1186222-T	0.462012	5E-36		0.0281623	[0.024-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
1159	chr7	75247328	75247329	rs1186222	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	7q11.23	HIP1	rs1186222-T	0.461991	8E-34		0.02720927	[0.023-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
1159	chr7	75247328	75247329	rs1186222	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count (basophil)	171,846 European ancestry individuals	NA	7q11.23	HIP1	rs1186222-T	0.4619	3E-13		0.02593509	[0.019-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1159	chr7	75247328	75247329	rs1186222	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of white cells	171,996 European ancestry individuals	NA	7q11.23	HIP1	rs1186222-T	0.462	1E-12		0.02514043	[0.018-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1159	chr7	75247328	75247329	rs1186222	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of granulocytes	170,223 European ancestry individuals	NA	7q11.23	HIP1	rs1186222-T	0.4619	2E-11		0.02404123	[0.017-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1159	chr7	75251594	75251594	rs797042243	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	7q11.23	NR	rs797042243-D	0.453807	2E-29		0.024252	[0.02-0.028] SD unit decrease	Affymetrix, Illumina [50036608] (imputed)	N
1159	chr7	75255214	75255215	rs1179624	24951543	Liao J	2014-06-20	Hum Mol Genet	Meta-analysis of genome-wide association studies in multiethnic Asians identifies two loci for age-related nuclear cataract.	Age-related nuclear cataracts	2,369 Malay ancestry individuals, 2,200 Indian ancestry individuals, 2,571 Chinese ancestry individuals	NA	7q11.23	HIP1	rs1179624-T	NR	5E-6	(Fixed effect)	0.06	[0.04-0.08] unit increase	Illumina [4736131] (imputed)	N
1159	chr7	75257370	75257371	rs118048475	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	7q11.23	NR	rs118048475-T	0.975	4E-15	(conditional)	2.302	[2.09-2.51]	Illumina [11270530] (imputed)	N
1159	chr7	75270072	75270073	rs2705789	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q11.23	NR	rs2705789-A	0.445999	3E-26				Affymetrix, Illumina [19905671] (imputed)	N
1159	chr7	75273438	75273439	rs117934917	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	7q11.23	NR	rs117934917-?	NR	5E-10	(CCL24)	0.887431	[0.61-1.17] unit increase	Illumina [11901634] (imputed)	N
1159	chr7	75273438	75273439	rs117934917	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	7q11.23	NR	rs117934917-?	NR	3E-12	(CCL24)	1.00017	[0.72-1.28] unit increase	Illumina [11901634] (imputed)	N
1159	chr7	75278546	75278547	rs4573208	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	7q11.23	NR	rs4573208-A	0.149	2E-15		1.173	[1.13-1.21]	Illumina [11270530] (imputed)	N
1159	chr7	75294856	75294857	rs118150334	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	7q11.23	NR	rs118150334-?	NR	2E-8				Illumina [7760689] (imputed)	N
1159	chr7	75321460	75321461	rs146063533	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	7q11.23	NR	rs146063533-T	0.028	9E-16		1.612	[1.5-1.73]	Illumina [11270530] (imputed)	N
1159	chr7	75347258	75347259	rs13239350	31123309	Rayner C	2019-05-23	Transl Psychiatry	A genome-wide association meta-analysis of prognostic outcomes following cognitive behavioural therapy in individuals with anxiety and depressive disorders.	Response to cognitive-behavioural therapy in major depressive disorder	832 adult cases	NA	7q11.23	CCL24, CCL26, HIP1, MIR4651, PMS2P3, POM121C, POR, RHBDD2, SNORA14A, SPDYE5	rs13239350-A	0.46	6E-6		0.23	[0.13-0.33] unit increase	Illumina [at least 4710000] (imputed)	N
1159	chr7	75348305	75348306	rs11770686	27797806	Muller SH	2016-10-20	Brain	Genome-wide association study in essential tremor identifies three new loci.	Essential tremor	1,778 European ancestry cases, 5,376 European ancestry controls	1,029 European ancestry cases, 1,065 European ancestry controls	7q11.23	NR	rs11770686-T	0.489299999999999	7E-6		1.1627907		Affymetrix [at least 416462] (imputed)	N
1160	chr7	75371145	75371146	rs67999259	31826910	Lu Y	2019-12-11	Cancer Epidemiol Biomarkers Prev	Identification of novel loci and new risk variant in known loci for colorectal cancer risk in East Asians.	Colorectal cancer	23,572 East Asian ancestry cases, 48,700 East Asian ancestry controls	58,131 European ancestry cases, 67,347 European ancestry controls	7q11.23		rs67999259-C	0.5369	2E-6	(East Asian)	1.07	[1.04-1.10]	Affymetrix, Illumina [up to 47000000] (imputed)	N
1160	chr7	75401983	75401984	rs4285428	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (hospitalized covid vs population)	613 European ancestry cases, 680,416 European ancestry controls, 140 Hispanic or Latin American cases, 94,327 Hispanic or Latin American controls, 49 Black or African American cases, 22,410 Black or African American controls	NA	7q11.23		rs4285428-?	NR	2E-6		1.4241087	[0.83-2.01] unit increase	Illumina [9875426] (imputed)	N
1160	chr7	75418626	75418627	rs60454790	28282560	Pott J	2017-02-24	Atherosclerosis	Genome-wide meta-analysis identifies novel loci of plaque burden in carotid artery.	Carotid plaque burden	7,189 European ancestry individuals	NA	7q11.23	CCL26	rs60454790-T	NR	9E-6		0.10899141	[0.061-0.157] unit decrease	Affymetrix [9576485] (imputed)	N
1160	chr7	75435622	75435623	rs192952984	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	7q11.23	Intergenic	rs192952984-T	NR	6E-6	(men)	0.193164	[0.11-0.28] unit decrease	Illumina [13520550] (imputed)	N
1160	chr7	75442293	75442294	rs11465296	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	7q11.23	CCL24	rs11465296-T	0.0377	1E-17		0.08019264	[0.062-0.099] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1160	chr7	75442293	75442294	rs11465296	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	7q11.23	CCL24	rs11465296-T	0.0377	3E-15		0.07397292	[0.056-0.092] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1160	chr7	75442293	75442294	rs11465296	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	7q11.23	CCL24	rs11465296-T	0.0377	4E-15		0.07406177	[0.056-0.093] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1160	chr7	75442293	75442294	rs11465296	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	7q11.23	CCL24	rs11465296-T	0.0377	8E-17		0.07820179	[0.06-0.097] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1160	chr7	75442406	75442407	rs11465295	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	7q11.23	NR	rs11465295-?	NR	2E-12	(CCL24)	0.590051	[0.43-0.75] unit increase	Illumina [11901634] (imputed)	N
1160	chr7	75442729	75442730	rs2302006	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	7q11.23	CCL24	rs2302006-G	0.1863	1E-33		0.05535412	[0.046-0.064] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1160	chr7	75442729	75442730	rs2302006	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	7q11.23	CCL24	rs2302006-G	0.1864	2E-36		0.05767676	[0.049-0.067] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1160	chr7	75442729	75442730	rs2302006	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	7q11.23	CCL24	rs2302006-G	0.1862	1E-32		0.05470689	[0.046-0.064] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1160	chr7	75442729	75442730	rs2302006	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	7q11.23	CCL24	rs2302006-G	0.1863	4E-37		0.05823524	[0.049-0.067] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1160	chr7	75446973	75446974	rs4728493	32826979	Meguro A	2020-08-21	Commun Biol	Genetic control of CCL24, POR, and IL23R contributes to the pathogenesis of sarcoidosis.	Sarcoidosis	685 Japanese ancestry cases, 847 Japanese ancestry controls	907 Japanese ancestry cases, 252 European ancestry cases, 1,042 Japanese ancestry controls, 256 European ancestry controls	7q11.23	CCL24	rs4728493-C	NR	1E-11		1.39	[1.27-1.53]	Illumina [530466] (imputed)	N
1160	chr7	75447155	75447156	rs73359714	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	7q11.23	NR	rs73359714-?	NR	7E-37	(CCL24)	0.934997	[0.79-1.08] unit increase	Illumina [11901634] (imputed)	N
1160	chr7	75449340	75449341	rs35033400	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	7q11.23		rs35033400-T	0.884	1E-19				Affymetrix [10369434] (imputed)	N
1160	chr7	75454151	75454152	rs13226583	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	7q11.23		rs13226583-T	NR	6E-39		0.0326	[0.028-0.037] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
1160	chr7	75454151	75454152	rs13226583	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	7q11.23	CCL24	rs13226583-T	0.11579	3E-55		0.05678658	[0.05-0.064] unit decrease	Affymetrix [93095623] (imputed)	N
1160	chr7	75454151	75454152	rs13226583	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	7q11.23	CCL24	rs13226583-T	0.115801	9E-64		0.060805805	[0.054-0.068] unit decrease	Affymetrix [93095623] (imputed)	N
1160	chr7	75454151	75454152	rs13226583	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q11.23	NR	rs13226583-T	0.121145	7E-88				Affymetrix, Illumina [19872809] (imputed)	N
1160	chr7	75454151	75454152	rs13226583	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	7q11.23	NR	rs13226583-T	0.115701	2E-88		0.061865	[0.056-0.068] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
1160	chr7	75454151	75454152	rs13226583	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	7q11.23		rs13226583-?	NR	4E-67				NR [~ 8900000] (imputed)	N
1160	chr7	75456923	75456924	rs62477649	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	7q11.23	CCL24	rs62477649-A	0.104555	9E-20		0.03436385	[0.027-0.042] unit decrease	Affymetrix [93095623] (imputed)	N
1160	chr7	75456923	75456924	rs62477649	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	7q11.23	CCL24	rs62477649-A	0.104527	4E-22		0.036211547	[0.029-0.044] unit decrease	Affymetrix [93095623] (imputed)	N
1160	chr7	75460392	75460393	rs2024050	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Eotaxin levels	8,153 Finnish ancestry individuals	NA	7q11.23	NR	rs2024050-G	NR	1E-8		0.1728	[0.11-0.23] SD units decrease	NR [10700000] (imputed)	N
1160	chr7	75460566	75460567	rs740311	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	7q11.23	AC005102.1	rs740311-A	0.1046	1E-12		0.04162314	[0.03-0.053] unit increase	Affymetrix [~ 2500000] (imputed)	N
1160	chr7	75460570	75460571	rs71560490	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count (basophil)	171,846 European ancestry individuals	NA	7q11.23	AC005102.1	rs71560490-A	0.1155	7E-10		0.03409838	[0.023-0.045] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1160	chr7	75462519	75462520	rs7809058	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	7q11.23	AC005102.1	rs7809058-T	0.895569	7E-52		0.05709792	[0.05-0.064] unit decrease	Affymetrix [93095623] (imputed)	N
1160	chr7	75463504	75463505	rs10755885	35264221	Caron B	2022-03-09	Genome Med	Integrative genetic and immune cell analysis of plasma proteins in healthy donors identifies novel associations involving primary immune deficiency genes.	Eotaxin 2 plasma levels	400 French ancestry individuals	NA	7q11.23		rs10755885-G	NR	9E-35		0.459	[0.36-0.56] pg/mL increase	Illumina [5201092] (imputed)	N
1160	chr7	75463504	75463505	rs10755885	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	7q11.23	NR	rs10755885-?	NR	2E-39	(CCL24)	1.3938	[1.19-1.6] unit decrease	Illumina [11901634] (imputed)	N
1160	chr7	75463504	75463505	rs10755885	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	7q11.23	NR	rs10755885-?		2E-127	(CCL24)	1.445	[NR] unit increase	Illumina [NR]	N
1160	chr7	75469450	75469451	rs6467885	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	7q11.23	RHBDD2	rs6467885-C	0.8966	2E-30		0.06744475	[0.056-0.079] unit increase	Affymetrix [~ 2500000] (imputed)	N
1160	chr7	75470363	75470364	rs55879743	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	7q11.23	RHBDD2	rs55879743-T	0.066497	9E-43		0.063692205	[0.055-0.073] unit increase	Affymetrix [93095623] (imputed)	N
1160	chr7	75473954	75473955	rs6467887	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CCL11	5,364 Icelandic ancestry individuals	NA	7q11.23		rs6467887-A	0.1033	6E-23		0.305979	[0.25-0.37] unit increase	Illumina [7506463] (imputed)	N
1160	chr7	75473954	75473955	rs6467887	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	7q11.23		rs6467887-A	0.104	4E-11				Affymetrix [10369434] (imputed)	N
1160	chr7	75478241	75478242	rs73359750	30134952	Traglia M	2018-08-22	Genome Med	Cross-genetic determination of maternal and neonatal immune mediators during pregnancy.	Neonatal cytokine/chemokine levels (fetal genetic effect)	764 Hispanic, European, Asian, South Asian or African American individuals	NA	7q11.23	CCL24	rs73359750-T	0.08	5E-8	(CCL24)	0.86	[0.55-1.17] unit increase	Affymetrix [622716]	N
1160	chr7	75479447	75479448	rs6946822	25147954	Enroth S	2014-08-22	Nat Commun	Strong effects of genetic and lifestyle factors on biomarker variation and use of personalized cutoffs.	CCL24 levels	up to 653 individuals	up to 317 individuals	7q11.23	CCL24	rs6946822-T	0.43443	2E-36		0.62	[0.52-0.72] unit decrease	Illumina [4840842] (imputed)	N
1160	chr7	75481611	75481612	rs6969965	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	7q11.23	RHBDD2	rs6969965-C	0.9064	2E-29		0.06935248	[0.057-0.081] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1160	chr7	75481611	75481612	rs6969965	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	7q11.23	RHBDD2	rs6969965-C	0.9064	1E-35		0.07663681	[0.065-0.089] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1160	chr7	75481611	75481612	rs6969965	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	7q11.23	RHBDD2	rs6969965-C	0.9063	2E-32		0.07327594	[0.061-0.085] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1160	chr7	75481611	75481612	rs6969965	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	7q11.23	RHBDD2	rs6969965-C	0.9064	1E-31		0.0721411	[0.06-0.084] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1160	chr7	75486693	75486694	rs58574691	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	7q11.23	RHBDD2	rs58574691-A	0.176994	4E-22		0.02969549	[0.024-0.036] unit increase	Affymetrix [93095623] (imputed)	N
1160	chr7	75486693	75486694	rs58574691	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	7q11.23	RHBDD2	rs58574691-A	0.176984	1E-16		0.025185749	[0.019-0.031] unit increase	Affymetrix [93095623] (imputed)	N
1160	chr7	75486779	75486779	rs140948517	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	7q11.23	RHBDD2	rs140948517-CT	0.1647	4E-13		0.03604023	[0.026-0.046] unit increase	Affymetrix [~ 2500000] (imputed)	N
1160	chr7	75486779	75486779	rs140948517	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	7q11.23	RHBDD2	rs140948517-CT	0.1647	4E-12		0.03459839	[0.025-0.044] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1160	chr7	75486779	75486779	rs140948517	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	7q11.23	RHBDD2	rs140948517-CT	0.1648	6E-15		0.03876906	[0.029-0.049] unit increase	Affymetrix [~ 2500000] (imputed)	N
1160	chr7	75486779	75486779	rs140948517	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	7q11.23	RHBDD2	rs140948517-CT	0.1647	3E-13		0.0363936	[0.027-0.046] unit increase	Affymetrix [~ 2500000] (imputed)	N
1160	chr7	75486779	75486779	rs140948517	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	7q11.23	RHBDD2	rs140948517-CT	0.1648	5E-14		0.0374317	[0.028-0.047] unit increase	Affymetrix [~ 2500000] (imputed)	N
1160	chr7	75495523	75495524	rs757589	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	7q11.23		rs757589-C	NR	7E-9		0.0144	[0.0095-0.0193] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
1161	chr7	75505490	75505491	rs56045460	34847907	Tegelberg P	2021-11-30	BMC Oral Health	Genome-wide association study of periodontal pocketing in Finnish adults.	Periodontal pocket (adjusted for age and sex)	3,906 Finnish ancestry individuals	NA	7q11.23		rs56045460-A	0.088	2E-6				Illumina [NR] (imputed)	N
1161	chr7	75529136	75529137	rs10280802	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	7q11.23	POR	rs10280802-?	NR	3E-6	(citrate)	0.34335852	[0.2-0.49] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1161	chr7	75557080	75557081	rs187104447	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	7q11.23		rs187104447-?	NR	9E-12				NR [~ 8900000] (imputed)	N
1161	chr7	75557145	75557146	rs10278227	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	7q11.23	NR	rs10278227-?	NR	2E-17	(CCL24)	0.554164	[0.43-0.68] unit decrease	Illumina [11901634] (imputed)	N
1161	chr7	75579714	75579715	rs76718054	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	7q11.23	NR	rs76718054-?	NR	1E-13	(CCL24)	0.894639	[0.66-1.13] unit increase	Illumina [11901634] (imputed)	N
1161	chr7	75581340	75581341	rs239951	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Eotaxin levels	8,153 Finnish ancestry individuals	NA	7q11.23	NR	rs239951-G	NR	7E-7		0.0927	[0.056-0.129] SD units increase	NR [10700000] (imputed)	N
1161	chr7	75610875	75610876	rs17853284	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Testosterone levels	310,461 European ancestry individuals, 5,453 African ancestry individuals, 6,680 South Asian ancestry individuals	NA	7q11.23	NR	rs17853284-T	NR	5E-12		0.1341	[0.096-0.172] unit decrease	Affymetrix [9000000] (imputed)	N
1161	chr7	75610875	75610876	rs17853284	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	7q11.23	NR	rs17853284-C	0.995472	4E-34		0.117717	[0.099-0.136] unit increase	Affymetrix [16578495] (imputed)	N
1161	chr7	75610875	75610876	rs17853284	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	7q11.23	NR	rs17853284-C	0.995485	5E-49		0.30434	[0.26-0.35] unit increase	Affymetrix [16580851] (imputed)	N
1161	chr7	75610875	75610876	rs17853284	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	7q11.23	NR	rs17853284-C	0.99541	3E-14		0.111748	[0.083-0.141] unit increase	Affymetrix [16583148] (imputed)	N
1161	chr7	75610875	75610876	rs17853284	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	7q11.23	NR	rs17853284-C	0.995379	2E-21		0.16988	[0.13-0.21] unit increase	Affymetrix [16585745] (imputed)	N
1161	chr7	75611755	75611756	rs3815455	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	7q11.23		rs3815455-T	NR	3E-8		0.0112	[0.0073-0.0151] unit decrease	Affymetrix, Illumina [20538307] (imputed)	N
1161	chr7	75611755	75611756	rs3815455	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	7q11.23	POR	rs3815455-T	0.289827	3E-9		0.014588439	[0.0098-0.0194] unit decrease	Affymetrix [93095623] (imputed)	N
1161	chr7	75611755	75611756	rs3815455	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	7q11.23	POR	rs3815455-T	0.289709	2E-9		0.014706537	[0.0099-0.0195] unit decrease	Affymetrix [93095623] (imputed)	N
1161	chr7	75611755	75611756	rs3815455	31959922	Matoba N	2020-01-20	Nat Hum Behav	GWAS of 165,084 Japanese individuals identified nine loci associated with dietary habits.	Coffee consumption	152,634 Japanese ancestry individuals	NA	7q11.23	POR	rs3815455-?	NR	1E-8		0.067	[0.045-0.089] unit increase	Illumina [6108828] (imputed)	N
1161	chr7	75612802	75612803	rs41301394	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	7q11.23		rs41301394-T	NR	9E-9		0.0117	[0.0078-0.0156] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1161	chr7	75612802	75612803	rs41301394	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	177,082 European ancestry individuals	NA	7q11.23		rs41301394-T	0.28	5E-16		0.0297	[0.022-0.037] unit decrease	NR [8806780] (imputed)	N
1161	chr7	75612802	75612803	rs41301394	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D level variance	318,851 European ancestry individuals	NA	7q11.23		rs41301394-T	0.28	10E-24		0.028	[0.023-0.033] unit increase	NR [6098063] (imputed)	N
1161	chr7	75612802	75612803	rs41301394	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	7q11.23	POR	rs41301394-T	0.318	7E-11		0.0023	[0.0017-0.0029] unit increase	Affymetrix [NR] (imputed)	N
1161	chr7	75612802	75612803	rs41301394	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	7q11.23	POR	rs41301394-T	0.2894	1E-7	(EA)	0.002	[0.0012-0.0028] unit increase	Affymetrix [NR] (imputed)	N
1161	chr7	75612802	75612803	rs41301394	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	7q11.23	POR	rs41301394-T	0.3176	4E-19		0.0023	[0.0017-0.0029] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
1161	chr7	75612802	75612803	rs41301394	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	7q11.23	Intergenic	rs41301394-T	0.2806	1E-8	(MTAG)	0.0113	[0.0074-0.0152] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1161	chr7	75612802	75612803	rs41301394	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	7q11.23	Intergenic	rs41301394-T	0.2806	3E-11	(MTAG)	0.0122	[0.0087-0.0157] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1161	chr7	75612865	75612866	rs121912974	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Height	458,235 European ancestry individuals	NA	7q11.23		rs121912974-?	NR	6E-10		0.271153	[0.19-0.35] unit increase	NR [9800000] (imputed)	N
1161	chr7	75614776	75614777	rs2302429	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	7q11.23		rs2302429-A	NR	1E-8		0.0149	[0.0098-0.02] unit increase	Affymetrix, Illumina [20521447] (imputed)	N
1161	chr7	75614776	75614777	rs2302429	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	7q11.23	POR	rs2302429-?	NR	1E-11		0.0225	[0.017-0.028] unit increase	Affymetrix [5701386] (imputed)	N
1161	chr7	75615005	75615006	rs1057868	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	7q11.23		rs1057868-T	NR	1E-26		0.0184	[0.015-0.022] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
1161	chr7	75615005	75615006	rs1057868	33287642	Said MA	2020-12-08	J Am Heart Assoc	Associations of Observational and Genetically Determined Caffeine Intake With Coronary Artery Disease and Diabetes Mellitus.	Caffeine consumption from coffee	373,522 European ancestry individuals	NA	7q11.23	POR	rs1057868-C	0.714413	6E-22		0.02445	[0.019-0.029] unit decrease	Affymetrix [19400838] (imputed)	N
1161	chr7	75615005	75615006	rs1057868	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	7q11.23	POR	rs1057868-T	0.284844	1E-12		0.017661726	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1161	chr7	75615005	75615006	rs1057868	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q11.23	NR	rs1057868-T	0.31062	2E-11				Affymetrix, Illumina [24588908] (imputed)	N
1161	chr7	75615005	75615006	rs1057868	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals	NA	7q11.23	POR	rs1057868-T	0.2846	3E-8		0.0121717	[0.0079-0.0165] unit increase	Affymetrix, Illumina [8603712] (imputed)	N
1161	chr7	75615005	75615006	rs1057868	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Coffee consumption	335,909 European ancestry individuals	39,924 European ancestry individuals	7q11.23	POR	rs1057868-T	0.2851	1E-33		0.0197	[0.017-0.023] unit increase	Affymetrix [~ 7740000] (imputed)	N
1161	chr7	75615005	75615006	rs1057868	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter non-alcoholic beverage consumption	85,852 European ancestry individuals	39,924 European ancestry individuals	7q11.23	POR	rs1057868-T	0.2857	4E-23		0.0176	[0.014-0.021] unit increase	Affymetrix [~ 7740000] (imputed)	N
1161	chr7	75616104	75616105	rs17685	33287642	Said MA	2020-12-08	J Am Heart Assoc	Associations of Observational and Genetically Determined Caffeine Intake With Coronary Artery Disease and Diabetes Mellitus.	Caffeine consumption from tea	395,866 European ancestry individuals	NA	7q11.23	POR, STYXL1	rs17685-G	0.721688	7E-22		0.02391	[0.019-0.029] unit decrease	Affymetrix [19400838] (imputed)	N
1161	chr7	75616104	75616105	rs17685	33287642	Said MA	2020-12-08	J Am Heart Assoc	Associations of Observational and Genetically Determined Caffeine Intake With Coronary Artery Disease and Diabetes Mellitus.	Caffeine consumption from coffee or tea	362,316 European ancestry individuals	NA	7q11.23	POR, STYXL1	rs17685-G	0.721471	4E-56		0.0408	[0.036-0.046] unit decrease	Affymetrix [19400838] (imputed)	N
1161	chr7	75616104	75616105	rs17685	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	7q11.23	POR	rs17685-A	0.278122	7E-10		0.01546914	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1161	chr7	75616104	75616105	rs17685	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	7q11.23	NR	rs17685-A	0.278511	9E-14		0.015288	[0.011-0.019] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1161	chr7	75616104	75616105	rs17685	31837886	Kennedy OJ	2019-12-02	Am J Kidney Dis	Coffee Consumption and Kidney Function: A Mendelian Randomization Study.	Coffee consumption (cups per day)	227,666 British ancestry individuals	NA	7q11.23	POR	rs17685-A	0.281	8E-20		0.059	NR cups per day increase	NR [NR]	N
1161	chr7	75616104	75616105	rs17685	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (father's age at death)	309,383 European ancestry individuals	NA	7q11.23	SRRM3	rs17685-A	0.28	5E-8		0.01545	[0.0099-0.021] unit increase	Illumina [541614]	N
1161	chr7	75616104	75616105	rs17685	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter beverage consumption	85,852 European ancestry individuals	39,924 European ancestry individuals	7q11.23	POR	rs17685-A	0.2785	3E-16		0.0147	[0.011-0.018] unit increase	Affymetrix [~ 7740000] (imputed)	N
1161	chr7	75616104	75616105	rs17685	25288136	Cornelis MC	2014-10-07	Mol Psychiatry	Genome-wide meta-analysis identifies six novel loci associated with habitual coffee consumption.	Coffee consumption (cups per day)	91,462 European ancestry individuals	30,062 European ancestry individuals, 7,964 African American individuals	7q11.23	POR, SNORA14A, TMEM120A	rs17685-A	0.29	4E-11		0.07	[0.050-0.090] unit increase	Affymetrix, Illumina [2373958] (imputed)	N
1161	chr7	75616104	75616105	rs17685	25288136	Cornelis MC	2014-10-07	Mol Psychiatry	Genome-wide meta-analysis identifies six novel loci associated with habitual coffee consumption.	Coffee consumption	17,479 European ancestry high consumption individuals, 31,049 European ancestry no or low consumption individuals	6,497 European ancestry high consumption individuals, 432 African American high consumption individuals, 6,972 European ancestry no or low consumption individuals, 3,413 African American no or low consumption individuals	7q11.23	POR, SNORA14A, TMEM120A	rs17685-A	0.29	1E-9		0.08	[0.060-0.100] unit increase	Affymetrix, Illumina [2376205] (imputed)	N
1161	chr7	75622911	75622912	rs112463197	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q11.23	NR	rs112463197-C	0.83687	6E-32				Affymetrix, Illumina [17210439] (imputed)	N
1161	chr7	75622911	75622912	rs112463197	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	7q11.23	NR	rs112463197-C	0.834399	3E-34		0.031401	[0.026-0.036] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1161	chr7	75622911	75622912	rs112463197	32826979	Meguro A	2020-08-21	Commun Biol	Genetic control of CCL24, POR, and IL23R contributes to the pathogenesis of sarcoidosis.	Sarcoidosis	685 Japanese ancestry cases, 847 Japanese ancestry controls	907 Japanese ancestry cases, 252 European ancestry cases, 1,042 Japanese ancestry controls, 256 European ancestry controls	7q11.23	STYXL1-SRRM3, TMEM120A	rs112463197-T	NR	1E-10		1.37	[1.25-1.51]	Illumina [530466] (imputed)	N
1162	chr7	75636239	75636240	rs6978677	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	7q11.23	STYXL1	rs6978677-C	0.733078	2E-12		0.017999329	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1162	chr7	75638420	75638421	rs59882870	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	7q11.23		rs59882870-A	NR	2E-9		0.0145	[0.0098-0.0192] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1162	chr7	75638420	75638421	rs59882870	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q11.23	NR	rs59882870-A	0.183132	6E-13				Affymetrix, Illumina [23114412] (imputed)	N
1162	chr7	75654573	75654574	rs58925536	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	200,622 European ancestry individuals	NA	7q11.23	STYXL1	rs58925536-T	0.0339	6E-9		0.0306	[0.02-0.041] unit increase	Affymetrix, Illumina [34064007] (imputed)	N
1162	chr7	75654976	75654977	rs113570449	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q11.23	NR	rs113570449-A	0.200343	7E-16				Affymetrix, Illumina [24649327] (imputed)	N
1162	chr7	75655895	75655896	rs78478514	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	7q11.23	NR	rs78478514-T	0.167018	1E-10		0.016653	[0.012-0.022] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1162	chr7	75657849	75657850	rs11983987	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	7q11.23	NR	rs11983987-G	0.166766	3E-11		0.017188	[0.012-0.022] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
1162	chr7	75657849	75657850	rs11983987	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	7q11.23	NR	rs11983987-?		7E-9	(CCL24)	0.3609	[NR] unit increase	Illumina [NR]	N
1162	chr7	75664920	75664921	rs10954750	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	7q11.23		rs10954750-G	NR	2E-9		0.0141	[0.0094-0.0188] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
1162	chr7	75664920	75664921	rs10954750	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	7q11.23	STYXL1	rs10954750-G	0.7773	1E-14		0.03387618	[0.025-0.042] unit increase	Affymetrix [~ 2500000] (imputed)	N
1162	chr7	75671174	75671175	rs61303167	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	7q11.23	NR	rs61303167-T	NR	7E-11		0.0207	[0.014-0.027] unit increase	Affymetrix [9000000] (imputed)	N
1162	chr7	75671174	75671175	rs61303167	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	7q11.23	NR	rs61303167-T	NR	4E-13		0.0231	[0.017-0.029] unit increase	Affymetrix [9000000] (imputed)	N
1162	chr7	75671174	75671175	rs61303167	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	7q11.23	NR	rs61303167-T	NR	4E-11		0.0209	[0.015-0.027] unit increase	Affymetrix [9000000] (imputed)	N
1162	chr7	75671174	75671175	rs61303167	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	7q11.23	NR	rs61303167-T	NR	5E-11		0.0209	[0.015-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
1162	chr7	75671174	75671175	rs61303167	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	7q11.23	NR	rs61303167-T	NR	2E-12		0.0224	[0.016-0.029] unit increase	Affymetrix [9000000] (imputed)	N
1162	chr7	75672757	75672758	rs76074383	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	7q11.23	NR	rs76074383-?	NR	7E-12	(CCL24)	0.909872	[0.65-1.17] unit increase	Illumina [11901634] (imputed)	N
1162	chr7	75682329	75682330	rs3779420	31959922	Matoba N	2020-01-20	Nat Hum Behav	GWAS of 165,084 Japanese individuals identified nine loci associated with dietary habits.	Coffee consumption	152,634 Japanese ancestry individuals	NA	7q11.23	MDH2	rs3779420-?	NR	2E-9	(conditioned on rs3815455)	0.203	[0.14-0.27] unit decrease	Illumina [6108828] (imputed)	N
1162	chr7	75703018	75703019	rs79911532	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mononucleosis	17,457 European ancestry cases, 68,446 European ancestry controls	NA	7q11.23	NR	rs79911532-?	NR	6E-6		0.1223	[0.07-0.175] unit increase	Illumina [at least 560000] (imputed)	N
1162	chr7	75707519	75707523	rs200130196	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Eotaxin levels	8,153 Finnish ancestry individuals	NA	7q11.23	NR	rs200130196-GAAGA	NR	6E-6		0.0726	[0.041-0.104] SD units decrease	NR [10700000] (imputed)	N
1162	chr7	75734205	75734206	rs10085567	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	1,940 Japanese ancestry cases, 7,408 Japanese ancestry controls	4,071 Japanese ancestry cases, 54,470 Japanese ancestry controls	7q11.23	LOC645324	rs10085567-A	NR	2E-7		1.1086475	[1.06-1.16]	Illumina [6627481] (imputed)	N
1163	chr7	75769989	75769990	rs73138006	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	7q11.23		rs73138006-C	0.181239	5E-23		0.028742012	[0.023-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
1163	chr7	75788743	75788744	rs56163935	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Tea consumption	336,898 European ancestry individuals	39,924 European ancestry individuals	7q11.23	SRRM3	rs56163935-C	0.1811	1E-9		0.012	[0.0081-0.0159] unit increase	Affymetrix [~ 7740000] (imputed)	N
1163	chr7	75790404	75790405	rs9691174	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (father's age at death)	309,383 European ancestry individuals	NA	7q11.23	NR	rs9691174-G	NR	3E-7		0.01463	[0.0091-0.0202] unit increase	Illumina [541614]	N
1163	chr7	75803322	75803323	rs189937867	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	7q11.23	NR	rs189937867-?	NR	5E-13	(CCL24)	1.62751	[1.19-2.07] unit increase	Illumina [11901634] (imputed)	N
1163	chr7	75845596	75845597	rs3960554	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Eotaxin levels	8,153 Finnish ancestry individuals	NA	7q11.23	NR	rs3960554-G	NR	2E-6		0.0798	[0.047-0.113] SD units decrease	NR [10700000] (imputed)	N
1163	chr7	75846082	75846083	rs60717745	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	7q11.23		rs60717745-C	0.844	1E-9		0.0118	[0.0081-0.0155] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1163	chr7	75855510	75855511	rs11770797	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	7q11.23		rs11770797-G	NR	3E-8		0.014	[0.0091-0.0189] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
1163	chr7	75855510	75855511	rs11770797	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	7q11.23	NR	rs11770797-?	NR	2E-6	(EA, NADPH--cytochrome P450 reductase)			Affymetrix [509946]	N
1163	chr7	75879333	75879334	rs11984438	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	7q11.23	NR	rs11984438-?		2E-14	(CCL24)	0.3858	[NR] unit increase	Illumina [NR]	N
1164	chr7	75899084	75899085	rs77312476	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	7q11.23	SRRM3	rs77312476-T	0.85545	2E-8		0.0166676	[0.011-0.023] unit decrease	Affymetrix [NR] (imputed)	N
1164	chr7	75902029	75902030	rs4728638	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	7q11.23	Intergenic	rs4728638-T	0.1435	1E-10	(MTAG)	0.012	[0.0083-0.0157] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1164	chr7	75913641	75913642	rs13236526	28369058	Folkersen L	2017-04-03	PLoS Genet	Mapping of 79 loci for 83 plasma protein biomarkers in cardiovascular disease.	Blood protein levels in cardiovascular risk	3,394 European ancestry individuals	2,639 individuals	7q11.23	HSPB1	rs13236526-A	0.7	2E-25		0.36	unit increase	Illumina [5270624] (imputed)	N
1164	chr7	75919995	75919995	rs111642997	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	7q11.23	NR	rs111642997-?	NR	1E-11	(HSP_27)	0.357748	[0.25-0.46] unit decrease	Illumina [11901634] (imputed)	N
1164	chr7	75920814	75920815	rs12113288	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	7q11.23		rs12113288-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1164	chr7	75924217	75924218	rs2908203	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HSPB1	5,364 Icelandic ancestry individuals	NA	7q11.23		rs2908203-T	0.2398	7E-25		0.214905	[0.17-0.26] unit decrease	Illumina [7506463] (imputed)	N
1164	chr7	75930758	75930759	rs2868371	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Heat shock 27 kDa protein levels	21,758 European ancestry individuals	9,173 individuals	7q11.23		rs2868371-C	0.74	1E-553		0.4768	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1164	chr7	75930758	75930759	rs2868371	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	7q11.23	HSPB1	rs2868371-C	0.76703125	2E-16	(HSPB1, 11103_24_3)	0.24660456	[0.19-0.31] unit increase	Illumina [> 1000000] (imputed)	N
1164	chr7	75936098	75936099	rs6946310	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	1,940 Japanese ancestry cases, 7,408 Japanese ancestry controls	4,071 Japanese ancestry cases, 54,470 Japanese ancestry controls	7q11.23	HSPB1	rs6946310-T	NR	3E-7		1.1074197	[1.06-1.16]	Illumina [6627481] (imputed)	N
1164	chr7	75937048	75937049	rs2908197	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	7q11.23	NR	rs2908197-?	NR	2E-6		0.1227	[NR] unit increase	Illumina [up to 11892802] (imputed)	N
1164	chr7	75951229	75951230	rs7789940	21654844	Briggs FB	2011-06-09	Genes Immun	Genome-wide association study of severity in multiple sclerosis.	Multiple sclerosis	1,470 European ancestry cases	NA	7q11.23	LOC100289506	rs7789940-G	0.19	6E-6	(Extreme)	1.87	[NR]	Affymetrix [2110417] (imputed)	N
1164	chr7	75953296	75953297	rs758944	21654844	Briggs FB	2011-06-09	Genes Immun	Genome-wide association study of severity in multiple sclerosis.	Multiple sclerosis	1,470 European ancestry cases	NA	7q11.23	LOC100289506	rs758944-T	0.2	8E-6	(Continuous)	0.48	[NR] unit increase	Affymetrix [2110417] (imputed)	N
1164	chr7	75964342	75964343	rs2961033	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	7q11.23	YWHAG	rs2961033-C	NR	5E-7	(East Asian)	1.082	[1.05-1.12]	Illumina [6627481] (imputed)	N
1164	chr7	75969461	75969462	rs184260005	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	7q11.23	NR	rs184260005-?	NR	1E-13	(CCL24)	1.71763	[1.26-2.17] unit increase	Illumina [11901634] (imputed)	N
1164	chr7	75975585	75975586	rs7779014	21654844	Briggs FB	2011-06-09	Genes Immun	Genome-wide association study of severity in multiple sclerosis.	Multiple sclerosis	1,470 European ancestry cases	NA	7q11.23	YWHAG	rs7779014-T	0.2	8E-6	(Continuous)	0.48	[NR] unit increase	Affymetrix [2110417] (imputed)	N
1164	chr7	75975838	75975839	rs61536380	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	7q11.23	NR	rs61536380-?	NR	2E-11	(CCL24)	0.426923	[0.3-0.55] unit increase	Illumina [11901634] (imputed)	N
1164	chr7	75978228	75978229	rs17149161	21654844	Briggs FB	2011-06-09	Genes Immun	Genome-wide association study of severity in multiple sclerosis.	Multiple sclerosis	1,470 European ancestry cases	NA	7q11.23	YWHAG	rs17149161-A	0.2	6E-6	(Extreme)	1.87	[NR]	Affymetrix [2110417] (imputed)	N
1165	chr7	76036363	76036364	rs6465120	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	7q11.23	SRCRB4D	rs6465120-A	0.506038	3E-10		0.0125691	[0.0087-0.0165] unit increase	Affymetrix [NR] (imputed)	N
1165	chr7	76040863	76040864	rs6465122	25663231	Beecham GW	2015-02-06	Neurology	PARK10 is a major locus for sporadic neuropathologically confirmed Parkinson disease.	Parkinson disease and lewy body pathology	484 European ancestry cases, 1,145 European ancestry controls	NA	7q11.23	ZP3	rs6465122-T	0.223	7E-7		1.67	[NR]	Illumina [3922209] (imputed)	N
1165	chr7	76111937	76111938	rs12534498	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	7q11.23	NR	rs12534498-?		7E-9	(CCL24)	1.109	[NR] unit increase	Illumina [NR]	N
1165	chr7	76112245	76112246	rs151329883	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	7q11.23	NR	rs151329883-?	NR	9E-13	(CCL24)	1.82034	[1.32-2.32] unit increase	Illumina [11901634] (imputed)	N
1166	chr7	76216620	76216621	rs11505688	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	7q11.23	NR	rs11505688-?	NR	4E-8				Affymetrix [NR]	N
1166	chr7	76276093	76276094	rs1799123	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	7q11.23	NR	rs1799123-?	NR	2E-10	(CCL24)	0.61584	[0.43-0.81] unit decrease	Illumina [11901634] (imputed)	N
1167	chr7	76302320	76302321	rs199722446	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Large artery stroke	350 Indian ancestry cases, 2,154 Indian ancestry controls	NA	7q11.23		rs199722446-?	NR	9E-6		1.1163216	[1.06351194415279-1.17175340694183]	Illumina [up to 7827597] (imputed)	N
1167	chr7	76316595	76316596	rs114779080	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (hospitalized covid vs population)	613 European ancestry cases, 680,416 European ancestry controls, 140 Hispanic or Latin American cases, 94,327 Hispanic or Latin American controls, 49 Black or African American cases, 22,410 Black or African American controls	NA	7q11.23		rs114779080-?	NR	2E-6		0.7757862	[0.46-1.1] unit decrease	Illumina [9875426] (imputed)	N
1167	chr7	76316595	76316596	rs114779080	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid respiratory support vs population)	495 European ancestry cases, 680,440 European ancestry controls, 102 Hispanic or Latin American cases, 94,330 Hispanic or Latin American controls, 39 Black or African American cases, 22,410 Black or African American controls	NA	7q11.23		rs114779080-?	NR	7E-7		0.8832147	[0.54-1.23] unit decrease	Illumina [9842460] (imputed)	N
1167	chr7	76390969	76390970	rs38664	24430505	Moayyeri A	2014-01-14	Hum Mol Genet	Genetic determinants of heel bone properties: genome-wide association meta-analysis and replication in the GEFOS/GENOMOS consortium.	Bone properties (heel)	2,483 East Asian ancestry individuals, 1,885 European ancestry individuals, 11,146 individuals	10,074 European ancestry individuals, 2,870 European and other ancestry individuals, 21,434 individuals	7q11.23	UPK3B	rs38664-T	0.40	1E-7	(VOS)	0.05	[0.03-0.07] unit decrease	Affymetrix, Illumina [up to 2609590] (imputed)	N
1168	chr7	76448431	76448432	rs12673509	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	7q11.23	NR	rs12673509-?	NR	1E-9	(CCL24)	0.408507	[0.28-0.54] unit increase	Illumina [11901634] (imputed)	N
1168	chr7	76455762	76455763	rs11764670	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	7q11.23	NR	rs11764670-?	NR	7E-16	(CCL24)	0.434777	[0.33-0.54] unit increase	Illumina [11901634] (imputed)	N
1169	chr7	76549021	76549022	rs12673824	34417961	Guo D	2021-08-21	Biol Trace Elem Res	Preliminary study of genome-wide association identifies novel susceptibility genes for serum mineral elements in the Chinese Han population.	Copper levels	587 Han Chinese ancestry individuals	NA	7q11.23		rs12673824-?	NR	3E-6		0.227	[-2.70908-3.16308] unit increase	Affymetrix [6423076] (imputed)	N
1169	chr7	76552744	76552745	rs73144267	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	7q11.23	AC007003.1	rs73144267-T	0.837	2E-8		0.0497	[0.032-0.067] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1169	chr7	76574905	76574906	rs113905759	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Alcohol consumption x traumatic event in childhood (felt hated by family member) interaction	46,394 European ancestry individuals	NA	7q11.23		rs113905759-?	NR	4E-8		2.0509	[1.32-2.78] unit increase	Affymetrix [NR] (imputed)	N
1169	chr7	76605321	76605322	rs1861026	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	7q11.23	NR	rs1861026-T	0.1667	1E-9		0.020214686	[0.014-0.027] unit increase	Affymetrix [10549349] (imputed)	N
1169	chr7	76608142	76608143	rs2245368	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	7q11.23	NR	rs2245368-C	NR	5E-9		0.025	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
1169	chr7	76608142	76608143	rs2245368	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	7q11.23	DTX2P1-UPK3BP1-PMS2P11, DTX2P1	rs2245368-T	0.8238	1E-7		0.0491	[0.031-0.067] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1169	chr7	76608142	76608143	rs2245368	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically inactive individuals	561 African American women, 352 Filipino ancestry women, 725 Indian ancestry women, 19,366 European ancestry women, 251 African American men, 4,654 Indian ancestry men, 11,727 European ancestry men, 959 European ancestry individuals	1,437 African American women, 5,184 European ancestry women, 64 African American men, 5,416 European ancestry men	7q11.23	UPK3B, PMS2L11	rs2245368-C	0.17989999999999995	6E-6	(EA)	0.0586	[0.033-0.084] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1169	chr7	76608142	76608143	rs2245368	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	7q11.23	UPK3B, PMS2L11	rs2245368-?	NR	5E-9	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1169	chr7	76608142	76608143	rs2245368	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	7q11.23	CCDC140	rs2245368-T	0.8036	6E-7	(women)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1169	chr7	76608142	76608143	rs2245368	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	7q11.23	CCDC140	rs2245368-T	0.8036	3E-9				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1169	chr7	76608142	76608143	rs2245368	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in non-smokers	77,279 European ancestry women, 47,280 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	7q11.23	CCDC140	rs2245368-T	0.8036	8E-6	(women)	0.0349	[0.02-0.05] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1169	chr7	76608142	76608143	rs2245368	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in non-smokers	77,279 European ancestry women, 47,280 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	7q11.23	CCDC140	rs2245368-T	0.8036	2E-7		0.0305	[0.019-0.042] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1169	chr7	76608142	76608143	rs2245368	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	7q11.23	CCDC140	rs2245368-T	0.8036	6E-8	(women)	0.0378	[0.024-0.052] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1169	chr7	76608142	76608143	rs2245368	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	7q11.23	CCDC140	rs2245368-T	0.8036	3E-10		0.0331	[0.023-0.043] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1169	chr7	76608142	76608143	rs2245368	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	7q11.23	PMS2L11	rs2245368-C	0.19	7E-8		0.029	[0.018-0.039] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1169	chr7	76608142	76608143	rs2245368	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	7q11.23	PMS2L11	rs2245368-C	0.18	3E-8	(EA)	0.032	[0.021-0.043] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1169	chr7	76608142	76608143	rs2245368	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	7q11.23	PMS2L11	rs2245368-C	0.18	1E-6	(EA, men)	0.034	[0.02-0.048] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1169	chr7	76609943	76609944	rs2430307	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	7q11.23	UPK3B, PMS2L11	rs2430307-T	0.1792	5E-6	(EA)	0.0369	[0.021-0.053] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1169	chr7	76609943	76609944	rs2430307	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	7q11.23	UPK3B, PMS2L11	rs2430307-?	NR	2E-6	(EA, women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1169	chr7	76609943	76609944	rs2430307	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	7q11.23	UPK3B, PMS2L11	rs2430307-T	0.1792	7E-9	(EA)	0.043	[0.028-0.058] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1169	chr7	76609943	76609944	rs2430307	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	7q11.23	UPK3B, PMS2L11	rs2430307-T	0.1792	5E-6	(EA, women)	0.0436	[0.025-0.062] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1169	chr7	76632097	76632098	rs6954694	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	7q11.23	NA	rs6954694-A	0.835	1E-20		0.0241	[0.019-0.029] unit decrease	NR [~ 27400000] (imputed)	N
1169	chr7	76632097	76632098	rs6954694	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	7q11.23	NA	rs6954694-A	0.835	1E-20		0.0241	[0.019-0.029] unit decrease	NR [~ 27400000] (imputed)	N
1169	chr7	76632735	76632736	rs3748126	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		7q11.23	UPK3B	rs3748126-C	0.187649	1E-19		0.0165225	[0.013-0.02] unit increase	Affymetrix [12370749]	N
1169	chr7	76634462	76634463	rs17149254	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	7q11.23	NR	rs17149254-T	0.185417040776293	3E-11		0.037487555	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1169	chr7	76637069	76637070	rs4729098	31754094	Pisanu C	2019-11-21	Transl Psychiatry	Evidence that genes involved in hedgehog signaling are associated with both bipolar disorder and high BMI.	Bipolar disorder or body mass index	20,352 European ancestry bipolar disorder cases, 31,358 European ancestry controls, 322,154 European ancestry individuals with BMI data.	NA	7q11.23	DTX2P1-UPK3BP1-PMS2P11	rs4729098-A	NR	3E-8		0.037	[0.023-0.051] unit decrease	Illumina [2013566] (imputed)	N
1169	chr7	76638257	76638258	rs7792906	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	7q11.23		rs7792906-T	NR	3E-20		0.0194	[0.015-0.024] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1169	chr7	76638257	76638258	rs7792906	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	7q11.23		rs7792906-T	NR	2E-23		0.0242	[0.019-0.029] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1169	chr7	76639838	76639839	rs6951489	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	7q11.23		rs6951489-?	NR	4E-25				NR [~ 8900000] (imputed)	N
1169	chr7	76639870	76639871	rs6955651	20935630	Speliotes EK	2010-10-10	Nat Genet	Association analyses of 249,796 individuals reveal 18 new loci associated with body mass index.	Body mass index	Up to 123,865 European ancestry individuals	Up to 125,931 European ancestry individuals	7q11.23	KIAA1505	rs6955651-T	0.18	2E-6				Affymetrix, Illumina, Perlegen [~ 2800000] (imputed)	N
1170	chr7	76682609	76682610	rs71231793	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	7q11.23	UPK3B	rs71231793-T	0.841645	5E-14		0.0153814	[0.011-0.019] unit decrease	Affymetrix [12370749]	N
1170	chr7	76682734	76682735	rs9649187	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	7q11.23	NR	rs9649187-?	NR	2E-21				Affymetrix [~ 8270000] (imputed)	N
1170	chr7	76712627	76712628	rs11770817	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	7q11.23	NR	rs11770817-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
1170	chr7	76720581	76720582	rs3930017	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	7q11.23	NR	rs3930017-A	0.3933	1E-8		0.01	[0.0065-0.0135] unit decrease	NR [~ 27400000] (imputed)	N
1170	chr7	76720581	76720582	rs3930017	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	7q11.23	PMS2P9, CCDC146	rs3930017-G	0.57	5E-8		0.016	[0.01-0.022] unit increase	Illumina [6108953] (imputed)	N
1170	chr7	76738590	76738591	rs3864639	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	7q11.23	FAM185A	rs3864639-G	0.088	2E-7	(Urinary nitrogen )	0.05	[NR] g/d increase	Illumina [899892]	N
1170	chr7	76762950	76762951	rs12540771	22952603	Hart AB	2012-08-28	PLoS One	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 10 individuals	NA	7q11.23	CCDC146	rs12540771-?	NR	5E-6	(SF9)			Affymetrix [5476100] (imputed)	N
1170	chr7	76764969	76764970	rs3095447	33430853	Ustinova M	2021-01-11	BMC Med Genomics	Novel susceptibility loci identified in a genome-wide association study of type 2 diabetes complications in population of Latvia.	Ophthalmic complications in type 2 diabetes	203 European ancestry cases, 398 European ancestry controls	NA	7q11.23	CCDC146	rs3095447-A	0.4	3E-8		2.18	[1.66-2.87]	Illumina [5378539] (imputed)	N
1170	chr7	76764969	76764970	rs3095447	33430853	Ustinova M	2021-01-11	BMC Med Genomics	Novel susceptibility loci identified in a genome-wide association study of type 2 diabetes complications in population of Latvia.	Macrovascular complications in type 2 diabetes	333 European ancestry cases, 226 European ancestry controls	NA	7q11.23	CCDC146	rs3095447-A	0.37	5E-8		2.16	[7.64-2.84]	Illumina [5378539] (imputed)	N
1170	chr7	76772115	76772116	rs12667702	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	7q11.23	CCDC146	rs12667702-T	0.2051	4E-10		0.0147	[0.01-0.0194] unit decrease	Affymetrix [18391927] (imputed)	N
1171	chr7	76814052	76814053	rs73371569	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	7q11.23	NR	rs73371569-?	NR	6E-15				Affymetrix [~ 8270000] (imputed)	N
1171	chr7	76820799	76820800	rs10252204	31296530	Trendowski MR	2019-07-11	Clin Cancer Res	Clinical and Genome-Wide Analysis of Serum Platinum Levels after Cisplatin-Based Chemotherapy.	Serum platinum levels after completion of cisplatin chemotherapy	866 European ancestry individuals, 17 non-European ancestry individuals, 127 individuals	NR	7q11.23	NR	rs10252204-A	0.4261	3E-6		0.1349	[0.079-0.191] unit decrease	Illumina [7305641] (imputed)	N
1171	chr7	76844871	76844872	rs996251	34224794	Wang K	2021-07-02	Prog Neuropsychopharmacol Biol Psychiatry	Genome-wide association study identified INSC gene associated with Trail Making Test Part A and Alzheimer's disease related cognitive phenotypes.	Global cognition (Clinical Dementia Rating Scale Sum of Boxes)	684 European ancestry individuals, 17 Hispanic individuals, 36 African American individuals, 18 individuals	NA	7q11.23		rs996251-G	0.02	2E-6		1.995	[1.17-2.82] unit increase	NR [534934]	N
1171	chr7	76887188	76887189	rs3108430	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	7q11.23		rs3108430-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1171	chr7	76895675	76895676	rs66715423	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	7q11.23	NR	rs66715423-?	NR	8E-10				Affymetrix [~ 8270000] (imputed)	N
1171	chr7	76907549	76907550	rs73375428	34154648	Kim HR	2021-06-21	Alzheimers Res Ther	Identifying novel genetic variants for brain amyloid deposition: a genome-wide association study in the Korean population.	Amyloid beta positivity	629 Korean ancestry cases, 561 Korean ancestry controls	104 Korean ancestry cases, 180 Korean ancestry controls	7q11.23	CCDC146	rs73375428-G		3E-8		0.526	[NR]	Illumina [4906407] (imputed)	N
1171	chr7	76907749	76907750	rs2903923	34154648	Kim HR	2021-06-21	Alzheimers Res Ther	Identifying novel genetic variants for brain amyloid deposition: a genome-wide association study in the Korean population.	Amyloid beta positivity	629 Korean ancestry cases, 561 Korean ancestry controls	104 Korean ancestry cases, 180 Korean ancestry controls	7q11.23	NR	rs2903923-G		5E-8		0.536	[NR]	Illumina [4906407] (imputed)	N
1171	chr7	76908198	76908199	rs3828947	34154648	Kim HR	2021-06-21	Alzheimers Res Ther	Identifying novel genetic variants for brain amyloid deposition: a genome-wide association study in the Korean population.	Amyloid beta positivity	629 Korean ancestry cases, 561 Korean ancestry controls	104 Korean ancestry cases, 180 Korean ancestry controls	7q11.23	NR	rs3828947-C		6E-8		0.536	[NR]	Illumina [4906407] (imputed)	N
1171	chr7	76908689	76908690	rs11983537	34154648	Kim HR	2021-06-21	Alzheimers Res Ther	Identifying novel genetic variants for brain amyloid deposition: a genome-wide association study in the Korean population.	Amyloid beta positivity	629 Korean ancestry cases, 561 Korean ancestry controls	104 Korean ancestry cases, 180 Korean ancestry controls	7q11.23	NR	rs11983537-T		6E-8		0.563	[NR]	Illumina [4906407] (imputed)	N
1171	chr7	76910376	76910377	rs7796088	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 7, width of cartilaginous portion of nose)	2,187 European ancestry individuals	NA	7q11.23	NR	rs7796088-A	0.1412	5E-6		0.1986	[0.11-0.28] unit decrease	Illumina [10677593] (imputed)	N
1171	chr7	76915518	76915519	rs1880909	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	7q11.23	NR	rs1880909-?	NR	2E-12	(CCL24)	0.614695	[0.44-0.79] unit increase	Illumina [11901634] (imputed)	N
1171	chr7	76927289	76927290	rs76326531	33232274	Mohammadnejad A	2020-11-24	Aging (Albany NY)	Generalized correlation coefficient for genome-wide association analysis of cognitive ability in twins.	Cognitive function (generalized correlation coefficient)	278 Chinese ancestry dizygotic twins	NA	7q11.23	NR	rs76326531-?	NR	1E-6			[NR]	Illumina [5432814] (imputed)	N
1172	chr7	76941546	76941547	rs35791980	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Pursuit maintenance gain	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	7q11.23	GSAP	rs35791980-C	0.3378	4E-6	(African)			Illumina [4404269] (imputed)	N
1172	chr7	76948350	76948351	rs4727354	32581322	Kakuta Y	2020-06-24	Sci Rep	An Integrated Genomic and Transcriptomic Analysis Reveals Candidates of Susceptibility Genes for Crohn's Disease in Japanese Populations.	Crohn's disease	713 Japanese ancestry cases, 2,063 Japanese ancestry controls	NA	7q11.23	GSAP	rs4727354-?	NR	3E-6		1.14	[1.08-1.20]	NR [7424691] (imputed)	N
1172	chr7	76948350	76948351	rs4727354	30500874	Kakuta Y	2018-11-29	J Crohns Colitis	A genome-wide association study identifying RAP1A as a novel susceptibility gene for Crohn's disease in Japanese individuals.	Crohn's disease	713 Japanese ancestry cases, 2,083 Japanese ancestry controls	770 Japanese ancestry cases, 852 Japanese ancestry controls	7q11.23	GSAP, FGL2	rs4727354-T	0.043	7E-6		1.59	NR	NR [4335144] (imputed)	N
1172	chr7	76968377	76968378	rs78900159	27400856	Legge SE	2016-07-12	Mol Psychiatry	Genome-wide common and rare variant analysis provides novel insights into clozapine-associated neutropenia.	Clozapine-induced agranulocytosis/granulocytopenia in treatment-resistant schizophrenia	48 European ancestry cases, 18 European ancestry extreme cases, 5,583 European ancestry controls	161 cases, 249 clozapine-exposed controls, 947 unexposed controls	7q11.23	GSAP	rs78900159-A	0.0244	2E-6		2.7947		Illumina [7559010] (imputed)	N
1172	chr7	76989022	76989023	rs4727364	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	7q11.23	NR	rs4727364-?	NR	2E-16				Affymetrix [NR]	N
1172	chr7	77005160	77005160	rs370802342	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	7q11.23	GSAP	rs370802342-TA	0.20546	3E-8		1.044234	[1.02840984497507-1.06030161733972]	NR [9572556] (imputed)	N
1172	chr7	77018541	77018542	rs4296977	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	7q11.23	GSAP	rs4296977-C	0.16	2E-13		1.055	[1.04-1.07]	Affymetrix, Illumina [8307659] (imputed)	N
1172	chr7	77038944	77038945	rs2190097	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	7q11.23	GSAP	rs2190097-C	0.24	1E-8				NR [> 9500000] (imputed)	N
1172	chr7	77038944	77038945	rs2190097	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	7q11.23	NR	rs2190097-C	0.2417	2E-10		1.045	[1.032-1.059]	Affymetrix [15688218] (imputed)	N
1172	chr7	77038944	77038945	rs2190097	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic disease (asthma, hay fever or eczema)	106,772 European ancestry cases, 239,773 European ancestry controls	83,335 cases, 34,934 controls	7q11.23	NR	rs2190097-C	0.2417	3E-11		1.043	[1.031-1.056]	Affymetrix [15688218] (imputed)	N
1172	chr7	77038944	77038945	rs2190097	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	7q11.23		rs2190097-?	NR	7E-15				NR [~ 8900000] (imputed)	N
1172	chr7	77045805	77045806	rs4727380	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	7q11.23		rs4727380-?	NR	3E-10				NR [~ 8900000] (imputed)	N
1172	chr7	77047055	77047056	rs6970927	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (unclassified genus belonging to the order Clostridiales)	1,068 Japanese ancestry individuals	NA	7q11.23	RP5-899E9.1	rs6970927-C	0.30	7E-6	(female)	0.216	[0.12-0.31] unit increase	Illumina [6380737] (imputed)	N
1172	chr7	77047055	77047056	rs6970927	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota alpha diversity (PD_whole_tree index)	1,068 Japanese ancestry individuals	NA	7q11.23	RP5-899E9.1	rs6970927-C	0.30	9E-6	(female)	1.18	[0.67-1.69] unit increase	Illumina [6380737] (imputed)	N
1172	chr7	77047101	77047102	rs12669521	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	7q11.23	NR	rs12669521-G	NR	3E-9		0.0154	[0.01-0.02] unit decrease	Affymetrix [9000000] (imputed)	N
1172	chr7	77047101	77047102	rs12669521	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	7q11.23	NR	rs12669521-G	0.2961	3E-9		0.0263	[0.018-0.035] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1172	chr7	77049602	77049603	rs6465641	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	7q11.23	NR	rs6465641-?	NR	5E-10				Affymetrix [~ 8270000] (imputed)	N
1172	chr7	77051489	77051490	rs10278905	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	7q11.23		rs10278905-A	NR	3E-10		0.0131	[0.009-0.0172] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
1172	chr7	77052363	77052364	rs62476192	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	7q11.23	NR	rs62476192-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
1172	chr7	77055884	77055885	rs740157	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	7q11.23	NA	rs740157-A	0.4501	5E-13		0.0118	[0.0087-0.0149] unit increase	NR [~ 27400000] (imputed)	N
1172	chr7	77062711	77062712	rs7780883	24700089	Miura K	2014-04-04	J Med Virol	Genome-wide association study of HPV-associated cervical cancer in Japanese women.	Cervical cancer	226 Japanese ancestry cases, 186 Japanese ancestry controls	NA	7q11.23	intergenic	rs7780883-A	0.05376	2E-6		3.28	[1.956-5.50]	Affymetrix [556045]	N
1173	chr7	77070980	77070981	rs76535133	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	7q11.23	NR	rs76535133-?	NR	4E-11	(CCL24)	0.561219	[0.4-0.73] unit decrease	Illumina [11901634] (imputed)	N
1173	chr7	77077232	77077233	rs77099868	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	7q11.23	NR	rs77099868-?	NR	5E-11	(CCL24)	0.889064	[0.62-1.15] unit increase	Illumina [11901634] (imputed)	N
1173	chr7	77120232	77120236	rs202186916	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD39 on granulocyte	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	7q11.23		rs202186916-T	0.35845	1E-8		0.1774	[0.12-0.24] unit increase	Illumina [17954496] (imputed)	N
1173	chr7	77155228	77155228	rs774339320	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	7q11.23	PTPN12	rs774339320-T	NR	4E-11		0.0208243	[0.015-0.027] unit decrease	Affymetrix [319769] (imputed)	N
1173	chr7	77155228	77155228	rs774339320	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	7q11.23	PTPN12	rs774339320-T	NR	9E-11		0.020473	[0.014-0.027] unit decrease	Affymetrix [319769] (imputed)	N
1173	chr7	77155228	77155228	rs774339320	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	7q11.23	PTPN12	rs774339320-T	NR	3E-8		0.0176127	[0.011-0.024] unit decrease	Affymetrix [321169] (imputed)	N
1173	chr7	77162672	77162673	rs58166946	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	7q11.23	PTPN12	rs58166946-G	NR	2E-8		0.0161042	[0.011-0.022] unit decrease	Affymetrix [319769] (imputed)	N
1173	chr7	77162672	77162673	rs58166946	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	7q11.23	PTPN12	rs58166946-G	NR	4E-8		0.0156814	[0.01-0.021] unit decrease	Affymetrix [319769] (imputed)	N
1173	chr7	77163412	77163413	rs192364644	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	7q11.23	NR	rs192364644-C	0.612497	3E-11		0.013377	[0.0094-0.0173] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1173	chr7	77165498	77165499	rs6961318	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	7q11.23	PTPN12	rs6961318-C	NR	2E-8		0.0159374	[0.01-0.021] unit decrease	Affymetrix [319769] (imputed)	N
1173	chr7	77165498	77165499	rs6961318	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	7q11.23	PTPN12	rs6961318-C	NR	2E-8		0.0159889	[0.01-0.022] unit decrease	Affymetrix [319769] (imputed)	N
1173	chr7	77183168	77183168	rs372543528	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q11.23	PTPN12	rs372543528-A	0.48073	8E-9	(-4 ms)	0.03188	[0.021-0.043] unit increase	Affymetrix [10000000] (imputed)	N
1173	chr7	77183168	77183168	rs372543528	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q11.23	PTPN12	rs372543528-A	0.48073	5E-9	(2 ms)	0.0325319	[0.021-0.044] unit increase	Affymetrix [10000000] (imputed)	N
1173	chr7	77183168	77183168	rs372543528	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q11.23	PTPN12	rs372543528-A	0.48073	4E-9	(-2 ms)	0.0330213	[0.022-0.044] unit increase	Affymetrix [10000000] (imputed)	N
1173	chr7	77183168	77183168	rs372543528	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q11.23	PTPN12	rs372543528-A	0.48073	3E-9	(0 ms)	0.0333253	[0.022-0.045] unit increase	Affymetrix [10000000] (imputed)	N
1173	chr7	77183168	77183168	rs372543528	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q11.23	PTPN12	rs372543528-A	0.48073	2E-8	(4 ms)	0.0313362	[0.02-0.042] unit increase	Affymetrix [10000000] (imputed)	N
1173	chr7	77183168	77183168	rs372543528	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q11.23	PTPN12	rs372543528-A	0.48073	2E-8	(-6 ms)	0.0310269	[0.02-0.042] unit increase	Affymetrix [10000000] (imputed)	N
1174	chr7	77234903	77234904	rs66467147	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	7q11.23	PTPN12	rs66467147-A	0.61825	2E-10		0.014672326	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
1174	chr7	77235882	77235884	rs3083894	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	7q11.23		rs3083894-T	NR	4E-8		0.0129	[0.0084-0.0174] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
1174	chr7	77238677	77238678	rs112029703	28452372	Gorski M	2017-04-28	Sci Rep	1000 Genomes-based meta-analysis identifies 10 novel loci for kidney function.	Glomerular filtration rate (creatinine)	110,517 European ancestry individuals		7q11.23	TMEM60	rs112029703-A	NR	1E-9		0.0065	[0.0045-0.0085] unit decrease	Affymetrix, Illumina [up to 10971307] (imputed)	N
1174	chr7	77239221	77239222	rs10278337	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q11.23	NR	rs10278337-A	0.664075	2E-10				Affymetrix, Illumina [23472807] (imputed)	N
1174	chr7	77239734	77239735	rs17381884	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	7q11.23	PTPN12	rs17381884-C	NR	3E-12		0.0235712	[0.017-0.03] unit decrease	Affymetrix [319769] (imputed)	N
1174	chr7	77239734	77239735	rs17381884	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	7q11.23	PTPN12	rs17381884-C	NR	3E-12		0.0235031	[0.017-0.03] unit decrease	Affymetrix [319769] (imputed)	N
1174	chr7	77239734	77239735	rs17381884	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	7q11.23	PTPN12	rs17381884-C	NR	4E-9		0.0200586	[0.013-0.027] unit decrease	Affymetrix [321169] (imputed)	N
1174	chr7	77247820	77247821	rs9640663	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	7q11.23	PTPN12	rs9640663-G	NR	1E-8		0.0162071	[0.011-0.022] unit increase	Affymetrix [319769] (imputed)	N
1174	chr7	77247820	77247821	rs9640663	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	7q11.23	PTPN12	rs9640663-G	NR	2E-8		0.0159431	[0.01-0.022] unit increase	Affymetrix [319769] (imputed)	N
1174	chr7	77262588	77262588	rs11448612	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 23)	2,187 European ancestry individuals	NA	7q11.23	NR	rs11448612-TA	0.3122	4E-6		0.1502	[0.086-0.214] unit decrease	Illumina [10677593] (imputed)	N
1174	chr7	77265139	77265140	rs2230602	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	7q11.23	NR	rs2230602-A	NR	3E-9		0.0259	[0.017-0.035] unit increase	Affymetrix [9000000] (imputed)	N
1174	chr7	77269942	77269943	rs58329075	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	7q11.23	NR	rs58329075-?	NR	3E-9	(right pallidum)			NR [9227495] (imputed)	N
1174	chr7	77275422	77275423	rs7384722	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	7q11.23	NR	rs7384722-?	NR	5E-10				Affymetrix [~ 8270000] (imputed)	N
1174	chr7	77306024	77306025	rs11762512	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	7q11.23	NR	rs11762512-?	NR	4E-8	(left pallidum)			NR [9227495] (imputed)	N
1174	chr7	77306700	77306701	rs6465773	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	7q11.23	NR	rs6465773-?	NR	1E-8	(right pallidum)			NR [9227495] (imputed)	N
1174	chr7	77308294	77308295	rs17807185	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	7q11.23	RSBN1L	rs17807185-A	0.618	4E-13		0.022	[0.016-0.028] unit decrease	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
1174	chr7	77312473	77312474	rs7801062	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	7q11.23		rs7801062-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1174	chr7	77318097	77318098	rs200056155	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	7q11.23	RSBN1L-AS1	rs200056155-CA	NR	3E-12		0.0197689	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
1174	chr7	77318769	77318769	rs149943600	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	7q11.23		rs149943600-ACAAAGCCTAAAATATTTACAAATATTTTAGGTCTG	NR	4E-19		0.0175	[0.014-0.021] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
1174	chr7	77319582	77319583	rs58729654	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	7q11.23	RSBN1L-AS1	rs58729654-G	NR	3E-11		0.0194355	[0.014-0.025] unit decrease	Affymetrix [319769] (imputed)	N
1174	chr7	77319582	77319583	rs58729654	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	7q11.23	RSBN1L-AS1	rs58729654-G	NR	5E-11		0.0192247	[0.014-0.025] unit decrease	Affymetrix [319769] (imputed)	N
1174	chr7	77324494	77324495	rs13225229	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	7q11.23	RSBN1L-AS1	rs13225229-G	NR	3E-12		0.019821	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
1175	chr7	77333266	77333267	rs11764879	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	7q11.23	NA	rs11764879-A	0.2864	4E-10		0.0117	[0.008-0.0154] unit decrease	NR [~ 27400000] (imputed)	N
1175	chr7	77333266	77333267	rs11764879	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	7q11.23	NR	rs11764879-A	0.2864	4E-10		0.0117	[0.008-0.0154] unit decrease	NR [~ 27400000] (imputed)	N
1175	chr7	77337702	77337702	rs67403786	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	7q11.23	RSBN1L	rs67403786-AT	0.436156	1E-11		0.015691428	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1175	chr7	77342996	77342997	rs11766142	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	7q11.23		rs11766142-T	NR	5E-13		0.0162	[0.012-0.021] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
1175	chr7	77355898	77355899	rs148807853	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Face memory	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	7q11.23	RSBN1L	rs148807853-A	NR	4E-6		0.5718636	[0.34-0.8] unit decrease	Illumina [> 6200000] (imputed)	N
1175	chr7	77357747	77357748	rs10264590	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	7q11.23	NR	rs10264590-A	0.48	4E-23		0.018	[0.014-0.022] unit increase	Affymetrix [2446094] (imputed)	N
1175	chr7	77357747	77357748	rs10264590	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	7q11.23	NR	rs10264590-A	0.48	5E-8				Affymetrix [2446094] (imputed)	N
1175	chr7	77358071	77358072	rs11770446	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	7q11.23	NR	rs11770446-G	0.28755699999999995	1E-19		0.00740196	[0.0056-0.0092] unit increase	Affymetrix [16582909] (imputed)	N
1175	chr7	77358071	77358072	rs11770446	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	7q11.23	NR	rs11770446-G	0.28755699999999995	1E-9		0.00569632	[0.0037-0.0077] unit increase	Affymetrix [16582965] (imputed)	N
1175	chr7	77362488	77362489	rs17385641	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	7q11.23		rs17385641-?	NR	6E-8				NR [~ 8900000] (imputed)	N
1175	chr7	77362503	77362504	rs7795371	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	7q11.23	NR	rs7795371-A	0.565	3E-21		0.0172	[0.014-0.021] unit increase	NR [~ 27400000] (imputed)	N
1175	chr7	77365769	77365770	rs3764824	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q11.23	NR	rs3764824-G	0.480417	7E-12				Affymetrix, Illumina [19872809] (imputed)	N
1175	chr7	77365769	77365770	rs3764824	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	7q11.23	NR	rs3764824-G	0.497769	2E-13		0.014639	[0.011-0.019] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
1175	chr7	77371828	77371829	rs62460713	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	7q11.23	NR	rs62460713-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1175	chr7	77372376	77372376	rs35673255	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	7q11.23	RSBN1L	rs35673255-AT	0.496686	3E-10		0.013966643	[0.0096-0.0183] unit decrease	Affymetrix [93095623] (imputed)	N
1175	chr7	77391680	77391681	rs7801305	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	7q11.23	NR	rs7801305-?	NR	4E-21				Affymetrix [~ 8270000] (imputed)	N
1175	chr7	77397159	77397160	rs114720649	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	7q11.23	NR	rs114720649-?		1E-9		0.0135456	[0.0092-0.0179] unit decrease	Affymetrix [19400418] (imputed)	N
1175	chr7	77397636	77397637	rs6972210	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	7q11.23	RSBN1L	rs6972210-G	NR	1E-9		0.0181878	[0.012-0.024] unit increase	Affymetrix [319769] (imputed)	N
1175	chr7	77397636	77397637	rs6972210	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	7q11.23	RSBN1L	rs6972210-G	NR	2E-9		0.0180688	[0.012-0.024] unit increase	Affymetrix [319769] (imputed)	N
1175	chr7	77416438	77416439	rs6465825	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	7q11.23		rs6465825-C	NR	2E-10		0.014	[0.0097-0.0183] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
1175	chr7	77416438	77416439	rs6465825	26831199	Pattaro C	2016-01-21	Nat Commun	Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function.	Glomerular filtration rate in non diabetics (creatinine)	118,448 European ancestry individuals	36,433 European ancestry individuals	7q11.23	SLC22A2	rs6465825-T	NR	5E-11		0.0061	[0.0043-0.0079] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1175	chr7	77416438	77416439	rs6465825	20383146	Kottgen A	2010-04-11	Nat Genet	New loci associated with kidney function and chronic kidney disease.	Chronic kidney disease	Up to 67,093 European ancestry individuals	Up to 22,982 European ancestry individuals	7q11.23	PHTF2, RSBN1L, TMEM60	rs6465825-C	0.39	2E-9	(eGFRcrea)	0.01	[0.006-0.01] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1175	chr7	77417583	77417584	rs1544459	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	7q11.23	NR	rs1544459-?	NR	4E-8		0.12078	[0.078-0.164] unit increase	Affymetrix [7794483] (imputed)	N
1175	chr7	77417583	77417584	rs1544459	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	7q11.23	NR	rs1544459-?	NR	2E-7	(female)	0.12494	[0.078-0.172] unit increase	Affymetrix [7794483] (imputed)	N
1175	chr7	77422582	77422583	rs6973656	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	7q11.23	NR	rs6973656-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
1175	chr7	77422582	77422583	rs6973656	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	7q11.23	TMEM60	rs6973656-A	0.6359	2E-36		0.0035	[0.0029-0.0041] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
1175	chr7	77422582	77422583	rs6973656	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	13,359 South Asian ancestry individuals	NA	7q11.23	TMEM60	rs6973656-A	0.6637	3E-6		0.0109	[0.0062-0.0156] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
1175	chr7	77422582	77422583	rs6973656	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	7q11.23		rs6973656-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1175	chr7	77423151	77423152	rs1045463	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in non-diabetics	152,624 European ancestry individuals, 36,369 African American individuals	NA	7q11.23	TMEM60	rs1045463-T	0.252	6E-15		0.463	[0.35-0.58] unit decrease	Affymetrix [NR] (imputed)	N
1175	chr7	77423151	77423152	rs1045463	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	7q11.23	TMEM60	rs1045463-T	0.254	2E-23		0.0037	[0.0031-0.0043] unit decrease	Affymetrix [NR] (imputed)	N
1175	chr7	77424831	77424832	rs11286354	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	150,266 East Asian ancestry individuals	NA	7q11.23		rs11286354-T	0.230951	3E-8		0.0188693	[0.012-0.026] unit increase	Illumina [13478778] (imputed)	N
1175	chr7	77426481	77426482	rs6970595	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	7q11.23	NA	rs6970595-T	0.5762	4E-9		0.0101	[0.0068-0.0134] unit decrease	NR [~ 27400000] (imputed)	N
1175	chr7	77443976	77443977	rs6976465	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	7q11.23	PHTF2	rs6976465-C	NR	4E-9		0.0202683	[0.014-0.027] unit increase	Affymetrix [319769] (imputed)	N
1175	chr7	77443976	77443977	rs6976465	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	7q11.23	PHTF2	rs6976465-C	NR	4E-9		0.0202096	[0.013-0.027] unit increase	Affymetrix [319769] (imputed)	N
1175	chr7	77449597	77449598	rs10953356	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	7q11.23		rs10953356-G	NR	1E-48		0.0268	[0.023-0.03] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
1175	chr7	77449597	77449598	rs10953356	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	7q11.23	PHTF2	rs10953356-G	NR	5E-15		0.0242714	[0.018-0.03] unit decrease	Affymetrix [319769] (imputed)	N
1175	chr7	77449597	77449598	rs10953356	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	7q11.23	PHTF2	rs10953356-G	NR	4E-15		0.0243533	[0.018-0.03] unit decrease	Affymetrix [319769] (imputed)	N
1175	chr7	77452145	77452146	rs6976860	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure in major depressive disorder-negative individuals	10,701 European ancestry cases, 39,677 European ancestry controls	NA	7q11.23	NR	rs6976860-G	0.333289	6E-7		1.142	[1.09-1.2]	Affymetrix [7791636] (imputed)	N
1175	chr7	77452145	77452146	rs6976860	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder in trauma exposed individuals	13,393 European ancestry cases, 10,701 European ancestry controls		7q11.23	NR	rs6976860-T	0.666711	7E-6		1.1235955	[1.07-1.18]	Affymetrix [7791636] (imputed)	N
1175	chr7	77453356	77453357	rs55759218	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	7q11.23	PHTF2	rs55759218-A	0.2668	5E-36		0.0039	[0.0031-0.0047] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
1175	chr7	77455898	77455899	rs4729772	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	7q11.23		rs4729772-G	NR	1E-11		0.0091	[0.0066-0.0116] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1176	chr7	77470392	77470392	rs558036185	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	7q11.23	PHTF2	rs558036185-CTTTTTTTTT	NR	3E-11		0.0192502	[0.014-0.025] unit decrease	Affymetrix [321169] (imputed)	N
1176	chr7	77482715	77482716	rs201777573	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	7q11.23	PHTF2	rs201777573-A	0.7318	1E-23	(EA)	0.0039	[0.0031-0.0047] unit increase	Affymetrix [NR] (imputed)	N
1176	chr7	77500733	77500734	rs7786368	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	7q11.23		rs7786368-C	NR	5E-30		0.0262	[0.022-0.031] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
1176	chr7	77500733	77500734	rs7786368	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	7q11.23	PHTF2	rs7786368-C	NR	1E-8		0.0163405	[0.011-0.022] unit decrease	Affymetrix [321114] (imputed)	N
1176	chr7	77500733	77500734	rs7786368	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	7q11.23	NR	rs7786368-C	0.4169	2E-16		0.0019	[0.0014-0.0024] unit decrease	Affymetrix [NR] (imputed)	N
1176	chr7	77508632	77508633	rs62462685	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	83,980 East Asian ancestry individuals	NA	7q11.23		rs62462685-T	0.206974	1E-10		0.0380711	[0.027-0.05] unit decrease	Illumina [13468899] (imputed)	N
1176	chr7	77508632	77508633	rs62462685	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Calcium levels	71,701 Japanese ancestry individuals	NA	7q11.23	PHTF2	rs62462685-?	NR	4E-8		0.03696	[0.024-0.05] unit decrease novel	Illumina [6108953] (imputed)	N
1176	chr7	77512097	77512098	rs7796089	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7q11.23		rs7796089-?	NR	1E-13				NR [~ 8900000] (imputed)	N
1176	chr7	77512097	77512098	rs7796089	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	7q11.23	PHTF2	rs7796089-C	0.3394	4E-15		0.221	[0.17-0.28] mmHg decrease	Affymetrix [NR] (imputed)	N
1176	chr7	77523768	77523769	rs10270542	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	7q11.23	PHTF2	rs10270542-G	NR	1E-15		0.0228225	[0.017-0.028] unit decrease	Affymetrix [319769] (imputed)	N
1176	chr7	77523768	77523769	rs10270542	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	7q11.23	PHTF2	rs10270542-G	NR	8E-16		0.0230266	[0.017-0.029] unit decrease	Affymetrix [319769] (imputed)	N
1176	chr7	77523768	77523769	rs10270542	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	7q11.23	PHTF2, PTPN12	rs10270542-G	0.3279	1E-15		8.019	NR z score decrease	Illumina [26237160] (imputed)	N
1176	chr7	77523768	77523769	rs10270542	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	7q11.23		rs10270542-?	NR	3E-21				NR [~ 8900000] (imputed)	N
1176	chr7	77537963	77537964	rs848494	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting insulin	151,013 European ancestry individuals	NA	7q21.11	PHTF2	rs848494-A	0.7369	9E-6		0.0089	[0.0048-0.013] unit increase	Affymetrix, Illumina [32635793] (imputed)	N
1176	chr7	77537963	77537964	rs848494	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	7q21.11	PHTF2	rs848494-G	NR	2E-11		0.0213413	[0.015-0.028] unit decrease	Affymetrix [321169] (imputed)	N
1176	chr7	77541672	77541673	rs848476	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Creatinine levels	110,051 European ancestry individuals	NA	7q21.11		rs848476-G	0.291943	2E-11		0.0259962	[0.018-0.034] unit increase	NR [11722792] (imputed)	N
1176	chr7	77541672	77541673	rs848476	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	7q21.11	NR	rs848476-G	0.292159	1E-16		0.0103733	[0.0077-0.013] unit increase	Affymetrix [16585854] (imputed)	N
1176	chr7	77541672	77541673	rs848476	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	7q21.11	NR	rs848476-G	0.292159	2E-7		0.00738493	[0.0043-0.0104] unit increase	Affymetrix [16585866] (imputed)	N
1176	chr7	77549905	77549906	rs12234571	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	7q21.11	PHTF2, RSBN1L	rs12234571-C	0.056	6E-6	(Diet protein )	0.03	[NR] %energy increase	Illumina [899892]	N
1176	chr7	77552126	77552127	rs848486	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	7q21.11	TMEM60	rs848486-G	0.34	1E-15		0.501	[0.32-0.69] ml/min/1.73m2 decrease	Affymetrix, Illumina [at least 5248638] (imputed)	N
1176	chr7	77552126	77552127	rs848486	27588450	Mahajan A	2016-09-01	Am J Hum Genet	Trans-ethnic Fine Mapping Highlights Kidney-Function Genes Linked to Salt Sensitivity.	Glomerular filtration rate	23,553 European ancestry individuals, 23,536 Japanese individuals, 16,325 Hispanic individuals, 8,224 African American individuals	NA	7q21.11	PHTF2	rs848486-G	NR	2E-8		0.643	[0.42-0.86] unit decrease	Affymetrix, Illumina [at least 6581000] (imputed)	N
1176	chr7	77555004	77555005	rs848490	26831199	Pattaro C	2016-01-21	Nat Commun	Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function.	Glomerular filtration rate in non diabetics (creatinine)	118,448 European ancestry individuals	36,433 European ancestry individuals	7q21.11	TMEM60	rs848490-C	NR	1E-12		0.0074	[0.0054-0.0094] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1176	chr7	77555004	77555005	rs848490	26831199	Pattaro C	2016-01-21	Nat Commun	Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function.	Glomerular filtration rate (creatinine)	133,413 European ancestry individuals	42,166 European ancestry individuals, up to 16,471 African ancestry individuals, up to 42,296 Asian ancestry individuals	7q21.11	TMEM60	rs848490-C	0.73	8E-13	(EA)	0.0073	[0.0053-0.0093] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1176	chr7	77557717	77557718	rs848492	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	7q21.11		rs848492-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1176	chr7	77562293	77562294	rs2428939	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	7q21.11	PHTF2	rs2428939-A	0.6344	2E-11		0.1352	[0.096-0.175] mmHg increase	Affymetrix [NR] (imputed)	N
1176	chr7	77572460	77572461	rs848445	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	7q21.11	PHTF2	rs848445-T	0.2777	7E-13		0.2004	[0.15-0.26] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1176	chr7	77591967	77591968	rs848465	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	7q21.11		rs848465-A	NR	4E-9		0.0126	[0.0085-0.0167] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
1176	chr7	77594018	77594019	rs62462737	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	7q21.11	NR	rs62462737-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
1177	chr7	77594627	77594628	rs848472	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	7q21.11	PHTF2	rs848472-T	NR	2E-9		0.0197483	[0.013-0.026] unit decrease	Affymetrix [319769] (imputed)	N
1177	chr7	77594627	77594628	rs848472	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	7q21.11	PHTF2	rs848472-T	NR	1E-9		0.0200997	[0.014-0.027] unit decrease	Affymetrix [319769] (imputed)	N
1177	chr7	77596811	77596812	rs848452	23064961	Shaffer JR	2012-10-11	J Dent Res	GWAS of dental caries patterns in the permanent dentition.	Dental caries	920 European ancestry individuals	NA	7q21.11	PHTF2	rs848452-?	NR	2E-6	(DMFS2)			Illumina [518997]	N
1177	chr7	77602502	77602503	rs848457	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	7q21.11	NR	rs848457-?	NR	1E-9		0.13175	[0.089-0.174] unit decrease	Affymetrix [7794483] (imputed)	N
1177	chr7	77602502	77602503	rs848457	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	7q21.11	NR	rs848457-?	NR	1E-7	(female)	0.1877	[0.12-0.26] unit decrease	Affymetrix [7794483] (imputed)	N
1177	chr7	77606012	77606013	rs1100237	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	7q21.11	RP5-1185I7.1	rs1100237-T	NR	1E-9		0.0175134	[0.012-0.023] unit decrease	Affymetrix [319769] (imputed)	N
1177	chr7	77606012	77606013	rs1100237	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	7q21.11	RP5-1185I7.1	rs1100237-T	NR	6E-10		0.0178416	[0.012-0.023] unit decrease	Affymetrix [319769] (imputed)	N
1177	chr7	77622696	77622697	rs1405421	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	7q21.11	PHTF2	rs1405421-?	NR	9E-6	(CE 16:0)	0.33102196	[0.19-0.48] unit increase	Affymetrix [at least 2500000] (imputed)	N
1177	chr7	77623089	77623090	rs117524812	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	7q21.11	NR	rs117524812-?	NR	2E-9	(CCL24)	0.674536	[0.45-0.9] unit decrease	Illumina [11901634] (imputed)	N
1177	chr7	77625983	77625984	rs200638911	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	7q21.11	NR	rs200638911-?	NR	9E-6		652.5593	NR unit decrease	Illumina [2379855]	N
1177	chr7	77681378	77681379	rs10236696	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	7q21.11	MAGI2, PHTF2	rs10236696-G	NR	8E-6	(sleep offset, weekdays)	0.2551	[0.14-0.37] unit increase	Affymetrix [7141204] (imputed)	N
1177	chr7	77682889	77682890	rs3807766	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	7q21.11	NR	rs3807766-?	NR	4E-6	(EA)	0.2122	[0.12-0.3] unit decrease	Illumina [up to 11892802] (imputed)	N
1177	chr7	77689887	77689888	rs10251504	25517131	Dijkstra AE	2015-02-27	Am J Respir Crit Care Med	Novel genes for airway wall thickness identified with combined genome-wide association and expression analyses.	Airway wall thickness	2,640 individuals	up to 714 individuals	7q21.11	MAGI2	rs10251504-?	NR	6E-7		0.035	[NR] unit increase	Illumina [522636]	N
1177	chr7	77689887	77689888	rs10251504	25517131	Dijkstra AE	2015-02-27	Am J Respir Crit Care Med	Novel genes for airway wall thickness identified with combined genome-wide association and expression analyses.	Airway wall thickness	2,640 individuals	up to 714 individuals	7q21.11	MAGI2	rs10251504-?	NR	2E-6	(FEV1/FVC < 80%)	0.036	[NR] unit increase	Illumina [522636]	N
1177	chr7	77689887	77689888	rs10251504	25517131	Dijkstra AE	2015-02-27	Am J Respir Crit Care Med	Novel genes for airway wall thickness identified with combined genome-wide association and expression analyses.	Airway wall thickness	2,640 individuals	up to 714 individuals	7q21.11	MAGI2	rs10251504-?	NR	1E-6	(Males only)	0.036	[NR] unit increase	Illumina [522636]	N
1177	chr7	77724225	77724226	rs3779306	29953918	Deng C	2018-06-25	Gene	Identification of three novel loci of ALDH2 Gene for Serum Folate levels in a Male Chinese Population by Genome-Wide Association Study.	Serum folate levels	1,999 Han Chinese ancestry individuals	NA	7q21.11	MAGI2	rs3779306-?	NR	9E-6				Illumina [1940243] (imputed)	N
1178	chr7	77741220	77741221	rs17522138	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 19)	2,187 European ancestry individuals	NA	7q21.11	NR	rs17522138-T	0.05777	2E-7		0.3339	[0.21-0.46] unit decrease	Illumina [10677593] (imputed)	N
1178	chr7	77762012	77762013	rs2074646	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	7q21.11		rs2074646-C	0.387	8E-14		0.009	[0.007-0.011] unit decrease	NR [NR] (imputed)	N
1178	chr7	77766519	77766520	rs987493	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Pursuit maintenance gain	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	7q21.11	MAGI2	rs987493-C	0.1186	1E-6				Illumina [4404269] (imputed)	N
1178	chr7	77771982	77771983	rs7802996	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	7q21.11	NR	rs7802996-T	0.166	9E-10		0.00887691	[0.006-0.0117] unit decrease	NR [9732723] (imputed)	N
1178	chr7	77771982	77771983	rs7802996	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	7q21.11	NR	rs7802996-T	0.166	1E-9		0.020884689	[0.014-0.028] unit decrease	NR [~ 10000000] (imputed)	N
1178	chr7	77773692	77773693	rs6958768	33693791	Park S	2021-03-09	J Nutr	Observational or Genetically Predicted Higher Vegetable Intake and Kidney Function Impairment: An Integrated Population-Scale Cross-Sectional Analysis and Mendelian Randomization Study.	Vegetable consumption	337,128 European ancestry individuals	NA	7q21.11	RSBN1L	rs6958768-C	0.167	1E-8		0.014	[0.01-0.018] unit decrease	NR [NR] (imputed)	N
1178	chr7	77804845	77804846	rs13240161	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	7q21.11	PHTF2	rs13240161-?	NR	8E-6	(allantoin)	0.18936239	[0.11-0.27] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1178	chr7	77823770	77823771	rs3807651	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	7q21.11	MAGI2	rs3807651-A	0.4938	9E-9		1.0249051		Affymetrix [11880941] (imputed)	N
1178	chr7	77824937	77824938	rs1829991	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	7q21.11	MAGI2	rs1829991-T	NR	3E-6		0.0375389	[0.022-0.053] unit decrease	Illumina [13520550] (imputed)	N
1178	chr7	77827064	77827064	rs3840590	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	7q21.11		rs3840590-G	0.65	3E-8				NR [NR] (imputed)	N
1178	chr7	77827064	77827064	rs3840590	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	7q21.11		rs3840590-G	0.65	1E-13		0.011	% increase	NR [NR] (imputed)	N
1178	chr7	77828939	77828940	rs3779273	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	7q21.11	NR	rs3779273-G	NR	2E-7		0.013	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
1178	chr7	77828939	77828940	rs3779273	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	7q21.11	MAGI2	rs3779273-A	0.4	8E-10		0.014	[0.01-0.018] unit decrease	Illumina [6108953] (imputed)	N
1178	chr7	77828939	77828940	rs3779273	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	7q21.11	MAGI2	rs3779273-G	0.586	2E-7		0.015	[0.0095-0.0213] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1178	chr7	77828939	77828940	rs3779273	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	7q21.11	MAGI2	rs3779273-G	0.586	2E-6	(EA)	0.015	[0.0088-0.021] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1178	chr7	77828990	77828991	rs3779272	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	7q21.11	NR	rs3779272-T	0.5782	1E-8		0.0213	[0.014-0.029] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1178	chr7	77829767	77829768	rs1852006	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	7q21.11	MAGI2	rs1852006-G	0.64299	2E-9		0.00877312	[0.0059-0.0116] unit increase	Affymetrix [12370749]	N
1178	chr7	77829767	77829768	rs1852006	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		7q21.11	MAGI2	rs1852006-G	0.64299	7E-10		0.00883089	[0.006-0.0116] unit increase	Affymetrix [12370749]	N
1178	chr7	77829767	77829768	rs1852006	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	7q21.11	NR	rs1852006-?	NR	2E-13				Affymetrix [~ 8270000] (imputed)	N
1178	chr7	77829767	77829768	rs1852006	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	7q21.11		rs1852006-?	NR	3E-13				NR [~ 8900000] (imputed)	N
1178	chr7	77829767	77829768	rs1852006	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	7q21.11	NA	rs1852006-A	0.376	7E-18		0.0153	[0.012-0.019] unit decrease	NR [~ 27400000] (imputed)	N
1178	chr7	77829767	77829768	rs1852006	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	7q21.11	NA	rs1852006-A	0.376	7E-18		0.0153	[0.012-0.019] unit decrease	NR [~ 27400000] (imputed)	N
1178	chr7	77838509	77838510	rs113527903	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	7q21.11	NR	rs113527903-?	NR	3E-6				Affymetrix [5486770] (imputed)	N
1179	chr7	77905129	77905130	rs10485879	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	7q21.11	Intergenic	rs10485879-?	NR	4E-7		1.5518312	[NR]	Affymetrix [492217] (imputed)	N
1179	chr7	77914342	77914343	rs798336	25342443	Lindstrom S	2014-10-24	Nat Commun	Genome-wide association study identifies multiple loci associated with both mammographic density and breast cancer risk.	Mammographic density (dense area)	7,600 European ancestry individuals	343 European ancestry individuals, 1,472 Old Order Amish individuals, 8,564 individuals	7q21.11	MAGI2	rs798336-T	0.88	2E-6				Affymetrix, Illumina [~ 2500000] (imputed)	N
1179	chr7	77917037	77917038	rs798338	25820613	Warrington NM	2015-03-27	Hum Mol Genet	Genome-wide association study of blood lead shows multiple associations near ALAD.	Lead levels in blood	5,433 individuals	NA	7q21.11	MAGI2	rs798338-A	0.354	4E-6		0.111	[0.058-0.164] unit decrease	Illumina [6391392] (imputed)	N
1179	chr7	77933030	77933031	rs118028745	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	7q21.11	NR	rs118028745-?	NR	2E-9	(CCL24)	0.671637	[0.45-0.89] unit decrease	Illumina [11901634] (imputed)	N
1179	chr7	77964787	77964788	rs2691543	20966902	Croteau-Chonka DC	2010-10-21	Obesity (Silver Spring)	Genome-wide association study of anthropometric traits and evidence of interactions with age and study year in Filipino women.	Height	1,792 Filipino ancestry females	NA	7q21.11	RPL13AP17	rs2691543-T	0.97	5E-6		3.45	[1.97-4.93] cm increase	Affymetrix [2073674] (imputed)	N
1179	chr7	77974790	77974791	rs142538175	30942860	Shin J	2019-04-03	J Clin Endocrinol Metab	Novel genetic locus of visceral fat and systemic inflammation.	Visceral fat	1589 French-Canadian ancestry individuals	NA	7q21.11	MAGI2	rs142538175-G	NR	6E-6	(adjusted for subcutaneous fat)	0.283	[0.16-0.41] unit decrease	Illumina [8511049] (imputed)	N
1180	chr7	77994293	77994294	rs6466171	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x short total sleep time interaction (2df test)	2,974 African American short sleepers, 365 Chinese ancestry short sleepers, 110 Asian ancestry short sleepers, at least 8,230 European ancestry short sleepers, 1,079 Hispanic/Latino short sleepers, 11,801 African American controls, 1,425 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,097 European ancestry controls, 4,023 Hispanic/Latino controls	at least 214 African American short sleepers, 629 East Asian ancestry short sleepers, up to 6,761 European ancestry short sleepers, 2,473 Hispanic short sleepers, at least 913 African American controls, 2,504 East Asian ancestry controls, up to 26,764 European ancestry controls, 9,854 Hispanic controls	7q21.11	MAGI2	rs6466171-?	NR	3E-11	(EA)	0.8267	[0.4-1.26] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1180	chr7	77994293	77994294	rs6466171	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x short total sleep time interaction (1df test)	2,974 African American short sleepers, 365 Chinese ancestry short sleepers, 110 Asian ancestry short sleepers, at least 8,230 European ancestry short sleepers, 1,079 Hispanic/Latino short sleepers, 11,801 African American controls, 1,425 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,097 European ancestry controls, 4,023 Hispanic/Latino controls	at least 214 African American short sleepers, 629 East Asian ancestry short sleepers, up to 6,761 European ancestry short sleepers, 2,473 Hispanic short sleepers, at least 913 African American controls, 2,504 East Asian ancestry controls, up to 26,764 European ancestry controls, 9,854 Hispanic controls	7q21.11	MAGI2	rs6466171-?	NR	2E-6	(EA)	2.674	[1.58-3.77] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1180	chr7	78001017	78001018	rs10244093	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x short total sleep time interaction (2df test)	2,974 African American short sleepers, 365 Chinese ancestry short sleepers, 110 Asian ancestry short sleepers, at least 8,230 European ancestry short sleepers, 1,079 Hispanic/Latino short sleepers, 11,801 African American controls, 1,425 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,097 European ancestry controls, 4,023 Hispanic/Latino controls	at least 214 African American short sleepers, 629 East Asian ancestry short sleepers, up to 6,761 European ancestry short sleepers, 2,473 Hispanic short sleepers, at least 913 African American controls, 2,504 East Asian ancestry controls, up to 26,764 European ancestry controls, 9,854 Hispanic controls	7q21.11	MAGI2	rs10244093-?	NR	3E-9		0.6898	[0.32-1.06] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
1180	chr7	78043290	78043291	rs17150687	22041458	Clark SL	2011-11-01	Psychol Med	Pharmacogenomic study of side-effects for antidepressant treatment options in STAR*D.	Response to anti-depressant treatment in major depressive disorder	1,151 European ancestry cases, 288 African American cases	NA	7q21.11	MAGI2	rs17150687-C	0.02	3E-6	(Bupropion, Sexual side effects)			Affymetrix [421789]	N
1180	chr7	78048741	78048742	rs62468774	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	7q21.11	MAGI2	rs62468774-A	0.869	8E-9		0.0101	[0.0066-0.0136] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
1180	chr7	78070627	78070628	rs2216076	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter beverage consumption	85,852 European ancestry individuals	39,924 European ancestry individuals	7q21.11	MAGI2	rs2216076-A	0.1219	6E-7		0.0124	[0.0075-0.0173] unit increase	Affymetrix [~ 7740000] (imputed)	N
1180	chr7	78075633	78075634	rs10260177	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	7q21.11	MAGI2	rs10260177-?		3E-17				Affymetrix, Illumina [NR] (imputed)	N
1181	chr7	78121457	78121458	rs7805441	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	7q21.11		rs7805441-?	NR	8E-10				NR [~ 8900000] (imputed)	N
1181	chr7	78122262	78122263	rs62467106	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	7q21.11	NR	rs62467106-?	NR	8E-10				Affymetrix [~ 8270000] (imputed)	N
1181	chr7	78139580	78139581	rs1030015	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	7q21.11	NR	rs1030015-T	0.52	6E-8		0.00585017	[0.0037-0.008] unit increase	NR [9732723] (imputed)	N
1181	chr7	78139580	78139581	rs1030015	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	7q21.11	NR	rs1030015-T	0.519564	2E-8	(Conditioned on chr7:77771983)	0.014289635	[0.0093-0.0193] unit increase	NR [~ 10000000] (imputed)	N
1181	chr7	78139580	78139581	rs1030015	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	7q21.11	NA	rs1030015-T	0.5422	1E-10		0.0109	[0.0076-0.0142] unit increase	NR [~ 27400000] (imputed)	N
1181	chr7	78144370	78144371	rs6963840	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		7q21.11	MAGI2	rs6963840-C	0.844199	9E-12		0.0129345	[0.0092-0.0166] unit decrease	Affymetrix [12370749]	N
1181	chr7	78152671	78152672	rs62468577	23897914	Wang H	2013-07-29	Pediatrics	A genome-wide association study (GWAS) for bronchopulmonary dysplasia.	Bronchopulmonary dysplasia	117 African American newborn cases, 108 African American newborn controls, 448 Hispanic newborn cases, 460 Hispanic newborn controls, 74 Asian or Pacific Islander ancestry newborn cases, 93 Asian or Pacific Islander ancestry newborn controls, 174 European ancestry newborn cases, 216 European ancestry newborn controls, 14 newborn cases, 22 newborn controls	371 newborn cases, 424 newborn controls	7q21.11	MAGI2	rs62468577-G	0.82	6E-6	(Dominant model)	1.5385	[NR]	Illumina [1795103]	N
1181	chr7	78158471	78158472	rs12666870	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	7q21.11	MAGI2	rs12666870-G	0.249	3E-6	(Light activity )	0.04	[NR] min/d increase	Illumina [899892]	N
1181	chr7	78163423	78163424	rs62468583	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	7q21.11		rs62468583-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1181	chr7	78175976	78175977	rs11525066	19668339	Potkin SG	2009-08-07	PLoS One	Hippocampal atrophy as a quantitative trait in a genome-wide association study identifying novel susceptibility genes for Alzheimer's disease.	Hippocampal atrophy	162 European ancestry cases, 192 European ancestry controls, 7 African American cases, 14 African American controls, 1 Asian ancestry cases, 3 Asian ancestry controls, 2 cases	NA	7q21.11	MAGI2	rs11525066-?	NR	3E-6				Illumina [516645]	N
1181	chr7	78238765	78238766	rs38098	33941792	Yoshimura K	2021-05-03	Sci Rep	A web-based survey on various symptoms of computer vision syndrome and the genetic understanding based on a multi-trait genome-wide association study.	Computer vision syndrome	1,966 Japanese ancestry individuals	NA	7q21.11	MAGI2	rs38098-?	NR	8E-6				Illumina [540916] (imputed)	N
1182	chr7	78292790	78292791	rs113805659	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (90 or 130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	7q21.11	MAGI2	rs113805659-?	NR	1E-7		0.191	[0.11-0.27] unit decrease	Illumina [at least 13000000] (imputed)	N
1182	chr7	78292790	78292791	rs113805659	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	7q21.11	MAGI2	rs113805659-?	NR	3E-7		0.185	[0.1-0.27] unit decrease	Illumina [at least 13000000] (imputed)	N
1182	chr7	78331464	78331465	rs1496766	23007406	Yang JJ	2012-09-24	Blood	Genome-wide association study identifies germline polymorphisms associated with relapse of childhood acute lymphoblastic leukemia.	Acute lymphoblastic leukemia (childhood)	1,268 European, South Asian, East Asian, African American/Afro-Caribbean, Hispanic and other ancestry cases	1,267 European, South Asian, East Asian, African American/Afro-Caribbean, Hispanic and other ancestry cases	7q21.11	MAGI2	rs1496766-C	0.014	5E-6		2.84	[1.81-4.44]	Affymetrix [444044]	N
1182	chr7	78336676	78336677	rs323167	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	7q21.11	MAGI2	rs323167-C	NR	3E-6	(East Asian)	1.103	[1.06-1.14]	Illumina [6627481] (imputed)	N
1182	chr7	78336676	78336677	rs323167	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	7q21.11	MAGI2	rs323167-C	NR	4E-8		1.0570824	[1.04-1.08]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1182	chr7	78336933	78336934	rs4727751	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	7q21.11	NR	rs4727751-T	NR	1E-6		1.05	[NR]	Illumina [7158791] (imputed)	N
1182	chr7	78337699	78337700	rs323169	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	7q21.11	NR	rs323169-?	NR	3E-8		1.054641	[1.04-1.07]	Affymetrix, Illumina [12447948] (imputed)	N
1182	chr7	78344388	78344389	rs7793494	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid vs negative)	9,913 European ancestry cases, 85,072 European ancestry controls, 2,553 Hispanic or Latin American cases, 13,086 Hispanic or Latin American controls, 506 Black or African American cases, 3,110 Black or African American controls	NA	7q21.11		rs7793494-?	NR	6E-6		0.10498892	[0.06-0.15] unit decrease	Illumina [9939936] (imputed)	N
1182	chr7	78346313	78346314	rs17151352	35157032	Ramachandran D	2022-02-14	Hum Mol Genet	Genome-wide association study and functional follow-up identifies 14q12 as a candidate risk locus for cervical cancer.	Cervical cancer	363 German ancestry cases, 861 German ancestry controls	NA	7q21.11	NR	rs17151352-T	0.1272	2E-7		20.0	[19.74-20.26]	Illumina [10000612] (imputed)	N
1183	chr7	78389832	78389833	rs12536030	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	7q21.11		rs12536030-C	0.953	1E-8		0.014	[0.01-0.018] unit increase	NR [NR] (imputed)	N
1183	chr7	78405408	78405409	rs73135595	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	7q21.11	NR	rs73135595-C	0.0439	1E-8		0.0150441	[0.0098-0.0202] unit decrease	NR [9732723] (imputed)	N
1183	chr7	78470644	78470645	rs535355	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder in trauma-unexposed individuals	9,487 European ancestry cases, 39,677 European ancestry controls	NA	7q21.11	NR	rs535355-G	0.377677	7E-7		1.1547344	[1.1-1.21]	Affymetrix [7791636] (imputed)	N
1184	chr7	78521291	78521292	rs78723182	32308125	Wolking S	2020-04-20	Pharmacogenomics	Pharmacoresponse in genetic generalized epilepsy: a genome-wide association study.	Response to lamotrigine and valproic acid in genetic generalized epilepsy	31 European ancestry responders, 73 European ancestry non-responders	NA	7q21.11	MAGI2	rs78723182-?	NR	2E-6				Affymetrix, Illumina [at least 3287443] (imputed)	N
1184	chr7	78599444	78599445	rs10268856	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7q21.11	NR	rs10268856-T	0.01916	2E-9	(ITIH4)	0.04438	NR unit increase	Illumina [1671387] (imputed)	N
1185	chr7	78652845	78652846	rs9649366	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	7q21.11	NR	rs9649366-?	NR	2E-9	(CCL24)	1.05366	[0.71-1.4] unit increase	Illumina [11901634] (imputed)	N
1185	chr7	78666642	78666643	rs74388387	29273593	Duan L	2017-12-22	Stroke	Novel Susceptibility Loci for Moyamoya Disease Revealed by a Genome-Wide Association Study.	Moyamoya disease	755 Han Chinese ancestry cases, 2,031 Han Chinese ancestry controls	724 Han Chinese ancestry cases, 3,043 Han Chinese ancestry controls	7q21.11	NR	rs74388387-C	0.19	2E-22		1.61	[NR]	Illumina [747089]	N
1185	chr7	78772545	78772546	rs12539913	30420678	Tasa T	2018-11-12	Eur J Hum Genet	Genetic variation in the Estonian population: pharmacogenomics study of adverse drug effects using electronic health records.	Adverse response to drug	16,226 European ancestry individuals	NA	7q21.11	MAGI2	rs12539913-A	0.059	8E-8	(Imidazole derivatives [G01AF])	2.77		Illumina [16500000] (imputed)	N
1188	chr7	79103892	79103893	rs1034797	29724592	Pottier C	2018-04-30	Lancet Neurol	Potential genetic modifiers of disease risk and age at onset in patients with frontotemporal lobar degeneration and GRN mutations: a genome-wide association study.	Memory dysfunction in frontotemporal lobe dementia	139 European ancestry cases, 243 European ancestry controls	NA	7q21.11	MAGI2	rs1034797-G	0.08	5E-6		3.84	[3.27-4.41]	Illumina [7033776] (imputed)	N
1188	chr7	79104120	79104121	rs761019157	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	7q21.11	MAGI2-AS3	rs761019157-A	0.0012	2E-7		2.1563	[1.35-2.96] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1188	chr7	79109641	79109642	rs1859596	25003214	Davis OS	2014-07-08	Nat Commun	The correlation between reading and mathematics ability at age twelve has a substantial genetic component.	Reading or mathematical ability	up to 2,794 European ancestry unrelated members of twin pairs	2,153 European ancestry individuals	7q21.11	intergenic	rs1859596-T	0.35	4E-6	(reading)	0.111	[0.064-0.158] unit increase	Affymetrix [1588650] (imputed)	N
1189	chr7	79263779	79263780	rs185338779	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	7q21.11	NR	rs185338779-?	NR	5E-6		0.297	[0.17-0.42] unit increase	Illumina [at least 560000] (imputed)	N
1190	chr7	79337747	79337748	rs4419754	31170924	Kong S	2019-06-06	BMC Med Genet	Identification of female-specific genetic variants for metabolic syndrome and its component traits to improve the prediction of metabolic syndrome in females.	Systolic blood pressure	4,659 Korean ancestry females	5,273 Korean ancestry females	7q21.11	LOC105375370	rs4419754-C	0.05022	7E-7		2.86	[1.73-3.99] unit decrease	Affymetrix [NR] (imputed)	N
1190	chr7	79385249	79385250	rs2714674	33144568	Quach BC	2020-11-03	Nat Commun	Expanding the genetic architecture of nicotine dependence and its shared genetics with multiple traits.	Nicotine dependence	46,213 European ancestry individuals, 11,787 African American individuals	31,854 European ancestry individuals, 1,937 individuals	7q21.11	MAGI2, GNAI1	rs2714674-T	NR	7E-9		0.018	[0.012-0.024] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1191	chr7	79442845	79442846	rs2714658	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x short total sleep time interaction (2df test)	2,990 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,300 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, at least 11,842 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,350 European ancestry controls, 4,047 Hispanic/Latino controls	at least 220 African American short sleepers, 326 East Asian ancestry short sleepers, up to 5,288 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 1,292 East Asian ancestry controls, up to 20,844 European ancestry controls, 10,062 Hispanic controls	7q21.11	MIR548M	rs2714658-?	NR	9E-7	(AA)	0.01835	[0.0064-0.0303] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
1191	chr7	79442845	79442846	rs2714658	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x short total sleep time interaction (2df test)	2,990 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,300 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, at least 11,842 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,350 European ancestry controls, 4,047 Hispanic/Latino controls	at least 220 African American short sleepers, 326 East Asian ancestry short sleepers, up to 5,288 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 1,292 East Asian ancestry controls, up to 20,844 European ancestry controls, 10,062 Hispanic controls	7q21.11	MIR548M	rs2714658-?	NR	5E-8	(Hispanic/Latino)	0.0254	[0.011-0.04] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
1191	chr7	79442845	79442846	rs2714658	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x short total sleep time interaction (2df test)	2,990 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,300 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, at least 11,842 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,350 European ancestry controls, 4,047 Hispanic/Latino controls	at least 220 African American short sleepers, 326 East Asian ancestry short sleepers, up to 5,288 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 1,292 East Asian ancestry controls, up to 20,844 European ancestry controls, 10,062 Hispanic controls	7q21.11	MIR548M	rs2714658-?	NR	5E-10		0.008732	[0.0046-0.0128] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
1191	chr7	79497050	79497051	rs78705986	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7q21.11	NR	rs78705986-T	0.06272	7E-9	(COL18A1)	0.03045	NR unit increase	Illumina [1671387] (imputed)	N
1191	chr7	79508887	79508888	rs2707895	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	7q21.11	MAGI2	rs2707895-?	NR	2E-6	(LPE 18:1)	0.23194565	[0.14-0.33] unit increase	Affymetrix [at least 2500000] (imputed)	N
1192	chr7	79662226	79662227	rs10237103	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	7q21.11	LOC100130215, LOC100128030	rs10237103-A	0.001	1E-6		34.08	[3.52-329.69]	Illumina [1556551]	N
1193	chr7	79787174	79787175	rs76545110	33223526	Hong S	2020-11-22	Transl Psychiatry	Genome-wide association study of Alzheimer's disease CSF biomarkers in the EMIF-AD Multimodal Biomarker Discovery dataset.	Central cerebrospinal fluid amyloid beta 42 to 40 ratio	677 European ancestry individuals	NA	7q21.11		rs76545110-A	0.9805	7E-6		0.146	[0.083-0.209] unit increase	Illumina [7778465] (imputed)	N
1193	chr7	79794273	79794274	rs73378654	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7q21.11	NR	rs73378654-G	0.01394	3E-8	(CCDC58)	0.01237	NR unit increase	Illumina [1671387] (imputed)	N
1193	chr7	79812825	79812826	rs67077197	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	7q21.11	GNAI1	rs67077197-T	0.042	2E-6		0.121	NR unit increase	Illumina [NR] (imputed)	N
1193	chr7	79818956	79818957	rs28435776	31324189	Kim W	2019-07-19	Respir Res	DSP variants may be associated with longitudinal change in quantitative emphysema.	Emphysema annual change measurement in smokers (adjusted lung density)	4,427 European ancestry individuals, 1,158 African American individuals	NA	7q21.11	GNAI1	rs28435776-A	NR	5E-6		0.117	[0.066-0.168] unit decrease	Illumina [NR] (imputed)	N
1194	chr7	79860292	79860293	rs4437584	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	7q21.11	GNAI1, CD36, SNRPBP1, GNAT3	rs4437584-A	NR	3E-6	(number of awakenings after sleep onset)	0.1078	[0.062-0.153] unit decrease	Affymetrix [7141204] (imputed)	N
1194	chr7	79880807	79880808	rs111376852	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Hepatitis A	2,442 European ancestry cases, 217,137 European ancestry controls	NA	7q21.11	NR	rs111376852-?	NR	6E-6		0.3635	[0.2-0.53] unit decrease	Illumina [at least 560000] (imputed)	N
1194	chr7	79897271	79897272	rs13223549	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Brevibacillus B abundance in stool	5,959 Finnish ancestry individuals	NA	7q21.11		rs13223549-G	0.337323	3E-8		0.0488399	[0.032-0.066] unit decrease	Illumina [7980478] (imputed)	N
1195	chr7	80045197	80045198	rs799979	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	7q21.11	GNAI1, GNAT3	rs799979-A	0.02	3E-8	(EA)	0.7513	[0.49-1.01] unit increase	Illumina [~ 9000000] (imputed)	N
1195	chr7	80045197	80045198	rs799979	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	7q21.11	GNAI1, GNAT3	rs799979-A	0.02	1E-6		0.5781	[0.35-0.81] unit increase	Illumina [~ 9000000] (imputed)	N
1196	chr7	80114433	80114434	rs7796785	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	7q21.11	NR	rs7796785-A	0.014397	4E-11		0.054114	[0.038-0.07] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
1196	chr7	80135087	80135088	rs7800804	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7q21.11	NR	rs7800804-G	0.01916	2E-8	(GYG2)	0.009073	NR unit increase	Illumina [1671387] (imputed)	N
1196	chr7	80174360	80174361	rs139761834	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Aspartate aminotransferase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	7q21.11	GNAT3, CD36	rs139761834-?		1E-12		0.0796	[0.058-0.102] unit decrease	Illumina [31500000] (imputed)	N
1196	chr7	80174360	80174361	rs139761834	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Platelet count	108,208 Japanese ancestry individuals	NA	7q21.11	GNAT3, CD36	rs139761834-?	NR	2E-17		0.1004	[0.077-0.124] unit decrease novel	Illumina [6108953] (imputed)	N
1196	chr7	80174360	80174361	rs139761834	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin concentration	108,728 Japanese ancestry individuals	NA	7q21.11	GNAT3, CD36	rs139761834-?	NR	4E-11		0.07859	[0.055-0.102] unit decrease novel	Illumina [6108953] (imputed)	N
1196	chr7	80174360	80174361	rs139761834	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Aspartate aminotransferase levels	134,154 Japanese ancestry individuals	NA	7q21.11	GNAT3, CD36	rs139761834-?	NR	3E-14		0.07965	[0.059-0.1] unit decrease novel	Illumina [6108953] (imputed)	N
1196	chr7	80201634	80201635	rs111683664	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	7q21.11		rs111683664-A	NR	3E-8		0.0172	[0.011-0.023] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
1196	chr7	80203165	80203166	rs2177616	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Platelet count	108,208 Japanese ancestry individuals	NA	7q21.11	NR	rs2177616-?	NR	1E-6		0.02081	[0.012-0.029] unit decrease novel	Illumina [6108953] (imputed)	N
1196	chr7	80208113	80208114	rs4731606	33545615	Hsu LA	2021-01-19	Atherosclerosis	Circulating chemerin levels are determined through circulating platelet counts in nondiabetic Taiwanese people: A bidirectional Mendelian randomization study.	Platelet count	17,037 Han Chinese ancestry individuals	NA	7q21.11	CD36	rs4731606-?	NR	6E-8		3.649	[2.46-4.84] unit decrease (adjusted)	Affymetrix [603527]	N
1196	chr7	80213055	80213056	rs11974777	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q21.11	NR	rs11974777-G	0.111518	7E-10				Affymetrix, Illumina [24649327] (imputed)	N
1196	chr7	80213055	80213056	rs11974777	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	7q21.11	CD36	rs11974777-T	0.9415625	1E-6	(CD36, 2973_15_2)	0.24054253	[0.14-0.34] unit decrease	Illumina [> 1000000] (imputed)	N
1197	chr7	80216204	80216205	rs11764390	35023831	Chong M	2022-01-13	Elife	GWAS and ExWAS of blood Mitochondrial DNA copy number identifies 71 loci and highlights a potential causal role in dementia.	Mitochondrial DNA copy number	395,718 British, Irish, Other White, South Asian, African ancestry individuals	NA	7q21.11	NR	rs11764390-A	0.558307	2E-8		0.0122	[0.0079-0.0165] unit decrease	Affymetrix [23037915] (imputed)	N
1197	chr7	80216204	80216205	rs11764390	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	7q21.11		rs11764390-G	0.562	7E-15				Affymetrix [10369434] (imputed)	N
1197	chr7	80216204	80216205	rs11764390	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	7q21.11	CD36	rs11764390-A	0.43949	1E-11		0.015598359	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1197	chr7	80216204	80216205	rs11764390	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	7q21.11	CD36	rs11764390-A	0.439474	4E-18		0.020469563	[0.016-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1197	chr7	80216204	80216205	rs11764390	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	7q21.11	CD36	rs11764390-A	0.439467	3E-21		0.021584047	[0.017-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1197	chr7	80216204	80216205	rs11764390	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	7q21.11	NR	rs11764390-G	0.559587	4E-35		0.024097	[0.02-0.028] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1197	chr7	80216204	80216205	rs11764390	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	7q21.11	CD36	rs11764390-A	0.4396	5E-12		0.02566238	[0.018-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1197	chr7	80218960	80218961	rs6961069	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	7q21.11	NR	rs6961069-T	0.407991	6E-36		0.023444	[0.02-0.027] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1197	chr7	80218960	80218961	rs6961069	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	7q21.11	CD36	rs6961069-T	0.4042	4E-12		0.02606619	[0.019-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
1197	chr7	80219861	80219861	rs141901413	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	7q21.11	NR	rs141901413-I	0.06455	1E-10		0.028257	[0.02-0.037] SD unit increase	Affymetrix, Illumina [50036608] (imputed)	N
1197	chr7	80221527	80221529	rs71835930	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	7q21.11	CD36	rs71835930-T	0.064284	7E-10		0.028193384	[0.019-0.037] unit increase	Affymetrix [93095623] (imputed)	N
1197	chr7	80222407	80222408	rs11974227	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q21.11	NR	rs11974227-T	0.112798	2E-51				Affymetrix, Illumina [24588908] (imputed)	N
1197	chr7	80222407	80222408	rs11974227	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q21.11	NR	rs11974227-C	0.929036	1E-35				Affymetrix, Illumina [17210439] (imputed)	N
1197	chr7	80223838	80223839	rs11768817	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q21.11	NR	rs11768817-G	0.0996135	3E-9				Affymetrix, Illumina [19905671] (imputed)	N
1197	chr7	80223894	80223895	rs11772036	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	15,171 African American or Afro-Caribbean and African ancestry individuals	NA	7q21.11	NR	rs11772036-G	0.81073	7E-10		0.08974	[0.061-0.118] SD units decrease	Affymetrix, Illumina [36877391] (imputed)	N
1197	chr7	80236013	80236014	rs13236689	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Platelet count	16,201 African American or Afro-Caribbean individuals	NA	7q21.11		rs13236689-T	0.4383	1E-8		0.0642	[0.042-0.086] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1197	chr7	80236013	80236014	rs13236689	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Platelet count	8,850 African American individuals, 18,949 Hispanic/Latino individuals, 541 Asian ancestry individuals, 603 Native American ancestry individuals, 385 individuals	NA	7q21.11	NR	rs13236689-?	NR	8E-8		2.837082	[1.8-3.87] unit increase	Illumina [30743395] (imputed)	N
1197	chr7	80236013	80236014	rs13236689	22423221	Qayyum R	2012-03-08	PLoS Genet	A meta-analysis and genome-wide association study of platelet count and mean platelet volume in african americans.	Platelet count	16,388 African American individuals	NA	7q21.11	CD36	rs13236689-T	0.436	3E-9		4.18	[2.81-5.55] 10^9 L increase	Affymetrix, Illumina [~ 2200000] (imputed)	N
1197	chr7	80249949	80249950	rs74524365	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q21.11	CD36	rs74524365-A	0.918243	3E-8	(140 ms)	0.0550943	[0.035-0.075] unit increase	Affymetrix [10000000] (imputed)	N
1197	chr7	80253454	80253455	rs2366855	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7q21.11		rs2366855-?	NR	8E-8				NR [~ 8900000] (imputed)	N
1197	chr7	80258629	80258630	rs11770907	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Platelet-derived growth factor subunit B levels	21,758 European ancestry individuals	9,173 individuals	7q21.11		rs11770907-A	0.53	2E-8		0.0497	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1197	chr7	80258809	80258810	rs10499859	19454037	Arnett DK	2009-05-19	BMC Med Genet	Genome-wide association study identifies single-nucleotide polymorphism in KCNB1 associated with left ventricular mass in humans: the HyperGEN Study.	Left ventricular mass	101 European ancestry cases, 101 European ancestry controls	704 European ancestry individuals, 1,467 African American individuals	7q21.11	CD36	rs10499859-?	0.45	3E-6	(EA)	0.091	[NR] g/m2 increase	Affymetrix [96258]	N
1197	chr7	80275454	80275455	rs1049654	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	7q21.11	CD36	rs1049654-C	0.561418	6E-12		0.021263357	[0.015-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1197	chr7	80283456	80283457	rs3211851	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	7q21.11	CD36	rs3211851-C	0.074595	2E-11		0.029812269	[0.021-0.038] unit increase	Affymetrix [93095623] (imputed)	N
1197	chr7	80286002	80286003	rs75326924	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	7q21.11		rs75326924-T	NR	2E-9		0.0553	[0.037-0.073] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
1197	chr7	80286002	80286003	rs75326924	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	118,886 East Asian ancestry individuals	NA	7q21.11		rs75326924-T	0.04625	2E-9		0.0552983	[0.037-0.073] unit decrease	Illumina [13474352] (imputed)	N
1197	chr7	80286002	80286003	rs75326924	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	7q21.11		rs75326924-T	NR	9E-10		0.0547	[0.037-0.072] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
1197	chr7	80286002	80286003	rs75326924	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	120,539 East Asian ancestry individuals	NA	7q21.11		rs75326924-T	0.04621	9E-10		0.0546645	[0.037-0.072] unit increase	Illumina [13474682] (imputed)	N
1197	chr7	80286002	80286003	rs75326924	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	7q21.11		rs75326924-T	NR	3E-31		0.0912	[0.076-0.106] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1197	chr7	80286002	80286003	rs75326924	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	7q21.11		rs75326924-T	0.046334	3E-31		0.0911907	[0.076-0.107] unit decrease	Illumina [13478928] (imputed)	N
1197	chr7	80286002	80286003	rs75326924	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	74,970 East Asian ancestry individuals	NA	7q21.11		rs75326924-T	0.046508	6E-23		0.109583	[0.088-0.131] unit increase	Illumina [13465896] (imputed)	N
1197	chr7	80286002	80286003	rs75326924	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	7q21.11		rs75326924-T	NR	6E-23		0.1096	[0.088-0.131] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
1197	chr7	80286002	80286003	rs75326924	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	7q21.11		rs75326924-T	NR	8E-16		0.0663	[0.05-0.082] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
1197	chr7	80286002	80286003	rs75326924	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	150,068 East Asian ancestry individuals	NA	7q21.11		rs75326924-T	0.046187	8E-16		0.0662623	[0.05-0.082] unit decrease	Illumina [13478956] (imputed)	N
1197	chr7	80286002	80286003	rs75326924	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	145,648 East Asian ancestry individuals	NA	7q21.11	NR	rs75326924-C	0.953783	1E-29		0.102252	[0.085-0.12] SD units increase	Affymetrix, Illumina [16710488] (imputed)	N
1197	chr7	80286907	80286908	rs11574703	22890011	Frazier-Wood AC	2012-08-09	Pharmacogenet Genomics	Genome-wide association study indicates variants associated with insulin signaling and inflammation mediate lipoprotein responses to fenofibrate.	Response to fenofibrate	817 European ancestry individuals	NA	7q21.11	CD36	rs11574703-T	NR	8E-8	(HDL diameter)	3.72	[2.39-5.05] unit decrease	Affymetrix [~ 2543887] (imputed)	N
1197	chr7	80289288	80289289	rs3212005	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	7q21.11	SEMA3C	rs3212005-?	NR	3E-6	(cyclic adenosine monophosphate)	2.1884618	[1.27-3.11] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1197	chr7	80292303	80292304	rs3211901	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Apolipoprotein A1 levels	398,508 European ancestry individuals	NA	7q21.11		rs3211901-?	NR	2E-10		0.342019	[0.23-0.46] unit increase	NR [9800000] (imputed)	N
1197	chr7	80296965	80296965	rs144658219	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	7q21.11	CD36	rs144658219-GTACTTGAT	0.42	2E-12		0.02568203	[0.018-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1197	chr7	80298172	80298173	rs3211931	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	7q21.11		rs3211931-?	NR	9E-19				NR [~ 8900000] (imputed)	N
1197	chr7	80298886	80298887	rs3211932	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	7q21.11	NR	rs3211932-C	0.43515	4E-10		0.012119	[0.0083-0.0159] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
1197	chr7	80300448	80300449	rs3211938	34376796	Sun Q	2021-08-11	J Hum Genet	Analyses of biomarker traits in diverse UK biobank participants identify associations missed by European-centric analysis strategies.	Serum alkaline phosphatase levels	9,354 African ancestry individuals	NA	7q21.11		rs3211938-G	0.1026	1E-14		0.2	[0.14-0.26] U/L decrease	NR [NR] (imputed)	N
1197	chr7	80300448	80300449	rs3211938	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Red cell distribution width	10,184 White ancestry individuals, 44 Asian ancestry individuals, 6,776 Black individuals, 11,978 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	7q21.11		rs3211938-G	NR	1E-13		0.31	[0.23-0.39] unit increase	Illumina [76131582]	N
1197	chr7	80300448	80300449	rs3211938	32602732	Baldassari AR	2020-06-30	Circ Genom Precis Med	Multi-ethnic Genome-wide Association Study of Decomposed Cardioelectric Phenotypes Illustrates Strategies to Identify and Characterize Evidence of Shared Genetic Effects for Complex Traits.	Electrocardiographic traits (multivariate)	17,873 European ancestry individuals, 12,749 Hispanic individuals, 5,408 African American individuals, 315 Chinese-American individuals	NA	7q21.11	CD36	rs3211938-G	NR	5E-9				Affymetrix, Illumina [22000000] (imputed)	N
1197	chr7	80300448	80300449	rs3211938	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	7q21.11	NR	rs3211938-?	NR	6E-19		3.064259	[2.39-3.74] unit increase	Illumina [31978362] (imputed)	N
1197	chr7	80300448	80300449	rs3211938	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	7q21.11	CD36	rs3211938-T	0.9109	3E-27		0.122	[0.1-0.144] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1197	chr7	80300448	80300449	rs3211938	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7q21.11	NR	rs3211938-T	NR	8E-6		0.144	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1197	chr7	80301003	80301004	rs3173805	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	7q21.11		rs3173805-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1197	chr7	80301935	80301936	rs1405747	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	7q21.11	CD36	rs1405747-A	0.434721	5E-34		0.028902518	[0.024-0.034] unit increase	Affymetrix [93095623] (imputed)	N
1197	chr7	80303700	80303716	rs3212018	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	7q21.11		rs3212018-A	NR	2E-15		0.0259	[0.02-0.032] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
1197	chr7	80303700	80303716	rs3212018	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	7q21.11		rs3212018-A	NR	4E-13		0.0235	[0.017-0.03] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
1197	chr7	80303700	80303716	rs3212018	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	7q21.11	CD36	rs3212018-A	0.144666	4E-18		0.028611835	[0.022-0.035] unit increase	Affymetrix [93095623] (imputed)	N
1197	chr7	80303700	80303716	rs3212018	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	7q21.11	CD36	rs3212018-A	0.14477	2E-19		0.032332025	[0.025-0.039] unit decrease	Affymetrix [93095623] (imputed)	N
1197	chr7	80303700	80303716	rs3212018	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	7q21.11	CD36	rs3212018-A	0.144707	1E-34		0.044599354	[0.037-0.052] unit decrease	Affymetrix [93095623] (imputed)	N
1197	chr7	80303700	80303716	rs3212018	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	7q21.11	CD36	rs3212018-A	0.14466	5E-11		0.021667723	[0.015-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1197	chr7	80304071	80304072	rs3211958	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	7q21.11	CD36	rs3211958-G	0.43525	4E-10		0.015174541	[0.01-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1197	chr7	80304071	80304072	rs3211958	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	7q21.11	CD36	rs3211958-G	0.435186	8E-10		0.019330626	[0.013-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1197	chr7	80304611	80304612	rs3211960	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	7q21.11	CD36	rs3211960-G	0.435248	5E-18		0.0195968	[0.016-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1197	chr7	80304611	80304612	rs3211960	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q21.11	NR	rs3211960-G	0.42504	4E-24				Affymetrix, Illumina [24246363] (imputed)	N
1197	chr7	80304611	80304612	rs3211960	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	7q21.11	NR	rs3211960-G	0.436275	3E-27		0.019787	[0.016-0.023] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
1197	chr7	80305278	80305278	rs112908525	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	7q21.11	CD36	rs112908525-TGAGGGTTGA	NR	2E-17		0.0350166	[0.027-0.043] unit increase	Affymetrix [16832071] (imputed)	N
1197	chr7	80305278	80305278	rs112908525	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	7q21.11	CD36	rs112908525-TGAGGGTTGA	0.432	1E-13		0.02663515	[0.02-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
1197	chr7	80306270	80306271	rs7755	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	7q21.11		rs7755-?	NR	2E-57				NR [~ 8900000] (imputed)	N
1197	chr7	80306349	80306350	rs1049673	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q21.11	NR	rs1049673-C	0.569439	7E-73				Affymetrix, Illumina [22063850] (imputed)	N
1197	chr7	80306349	80306350	rs1049673	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	7q21.11	NR	rs1049673-C	0.563727	4E-74		0.034498	[0.031-0.038] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
1197	chr7	80309726	80309727	rs34622902	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	7q21.11	CD36	rs34622902-T	0.0108665794620373	4E-6	(C_Deltaproteobacteria_HB)	1.46721	[0.85-2.09] unit decrease	Illumina [7711310] (imputed)	N
1197	chr7	80309726	80309727	rs34622902	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	7q21.11	CD36	rs34622902-T	0.0108665794620373	2E-7	(F_Desulfovibrionaceae_HB)	1.56048	[0.97-2.15] unit decrease	Illumina [7711310] (imputed)	N
1197	chr7	80312636	80312637	rs181616813	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	7q21.11		rs181616813-C	NR	2E-19		0.0287	[0.022-0.035] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
1197	chr7	80312636	80312637	rs181616813	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	7q21.11		rs181616813-C	NR	2E-10		0.0188	[0.013-0.025] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
1197	chr7	80312636	80312637	rs181616813	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	7q21.11	CD36	rs181616813-C	0.128394	2E-18		0.032334	[0.025-0.04] unit decrease	Affymetrix [93095623] (imputed)	N
1197	chr7	80319937	80319938	rs28832309	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red cell distribution width	6,141 African American individuals, 17,272 Hispanic or Latin American individuals, 9,611 European ancestry individuals, 123 Asian ancestry individuals, 20 Native American ancestry individuals, 382 individuals	NA	7q21.11		rs28832309-?	0.9472	1E-11		0.2072	[0.15-0.27] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
1197	chr7	80319937	80319938	rs28832309	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red cell distribution width	6,141 African American individuals	NA	7q21.11		rs28832309-?	0.9152	6E-7		0.1954	[0.12-0.27] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
1197	chr7	80319937	80319938	rs28832309	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red cell distribution width	17,272 Hispanic or Latin American individuals	NA	7q21.11		rs28832309-?	0.9864	7E-6		0.2112	[0.12-0.3] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
1197	chr7	80319937	80319938	rs28832309	30670697	Kilpelainen TO	2019-01-22	Nat Commun	Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity.	HDL cholesterol x physical activity interaction (2df test)	7,395 African American inactive individuals, 13,092 African American active individuals, 2,753 Asian ancestry inactive individuals, 3,650 Asian ancestry active individuals, 22,963 European ancestry inactive individuals, 61,939 European ancestry active individuals, 2,829 Hispanic or Latin American inactive individuals, 6,358 Hispanic or Latin American active individuals	1,886 African American inactive individuals, 1,892 African American active individuals, 1,217 South African Black ancestry inactive individuals, 389 South African Black ancestry active individuals, 2,494 East Asian ancestry inactive individuals, 1,947 East Asian ancestry active individuals,  724 South Asian ancestry inactive individuals, 1,425 South Asian ancestry active individuals, 41,042 European ancestry inactive individuals, 66,575 European ancestry active individuals, 2,619 Hispanic inactive individuals, 8,802 Hispanic active individuals	7q21.11	NR	rs28832309-C	0.073	2E-21				Affymetrix, Illumina [at least 2500000] (imputed)	N
1197	chr7	80320632	80320633	rs7797401	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	7q21.11	intergenic	rs7797401-A	0.4557	6E-22		0.03522368	[0.028-0.042] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1197	chr7	80322252	80322253	rs144703049	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q21.11	NR	rs144703049-A	0.108436	6E-11				Affymetrix, Illumina [24653286] (imputed)	N
1197	chr7	80322254	80322255	rs148083940	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q21.11	NR	rs148083940-G	0.108241	2E-22				Affymetrix, Illumina [24332387] (imputed)	N
1197	chr7	80322437	80322438	rs139906208	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	13,519 African American or Afro-Caribbean and African ancestry individuals	NA	7q21.11	NR	rs139906208-T	0.904175	4E-16		0.17006	[0.13-0.21] SD units decrease	Affymetrix, Illumina [36660117] (imputed)	N
1197	chr7	80328351	80328352	rs143722364	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	126,151 East Asian ancestry individuals	NA	7q21.11	NR	rs143722364-T	0.952214	2E-10		0.062366	[0.043-0.081] SD units increase	Affymetrix, Illumina [16289083] (imputed)	N
1197	chr7	80333317	80333317	rs146045456	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	7q21.11		rs146045456-TGTGA	NR	2E-11		0.0525	[0.037-0.068] unit decrease	Affymetrix, Illumina [20536605] (imputed)	N
1197	chr7	80333317	80333317	rs146045456	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	135,482 East Asian ancestry individuals	NA	7q21.11		rs146045456-TGTGA	0.062784	2E-11		0.0525165	[0.037-0.068] unit decrease	Illumina [13477028] (imputed)	N
1197	chr7	80338012	80338013	rs111747875	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder	29,475 European ancestry cases, 63,482 European ancestry controls	NA	7q21.11	NR	rs111747875-T	0.0192821	3E-6		1.071	[1.04-1.1]	Affymetrix [7791636] (imputed)	N
1197	chr7	80339975	80339976	rs6963015	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	7q21.11	NR	rs6963015-?	NR	6E-9				Affymetrix [NR]	N
1197	chr7	80340621	80340622	rs2366858	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	7q21.11	NR	rs2366858-?	NR	1E-8		1.398273	[0.92-1.88] unit decrease	Illumina [31978362] (imputed)	N
1197	chr7	80340621	80340622	rs2366858	23726366	Coram MA	2013-05-29	Am J Hum Genet	Genome-wide characterization of shared and distinct genetic components that influence blood lipid levels in ethnically diverse human populations.	HDL cholesterol	7,917 African American individuals, 3,506 Hispanic individuals	7,138 African American individuals	7q21.11	CD36	rs2366858-C	0.173	6E-10	(AA)	0.0325	[NR] unit increase	Affymetrix [NR]	N
1197	chr7	80342774	80342775	rs189213544	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	High density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	7q21.11	CD36, SEMA3C	rs189213544-?		1E-18		0.1447	[0.11-0.18] unit decrease	Illumina [31500000] (imputed)	N
1197	chr7	80342774	80342775	rs189213544	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	High density lipoprotein cholesterol levels	70,657 Japanese ancestry individuals	NA	7q21.11	CD36, SEMA3C	rs189213544-?	NR	5E-21		0.1447	[0.11-0.17] unit increase novel	Illumina [6108953] (imputed)	N
1197	chr7	80344360	80344361	rs4470970	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	7q21.11	CD36, SEMA3C	rs4470970-G	NR	6E-51				Affymetrix, Illumina [NR] (imputed)	N
1197	chr7	80344360	80344361	rs4470970	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	7q21.11	CD36, SEMA3C	rs4470970-G	NR	6E-45	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1197	chr7	80344360	80344361	rs4470970	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	7q21.11	CD36, SEMA3C	rs4470970-G	NR	5E-8	(AA)			Affymetrix, Illumina [NR] (imputed)	N
1197	chr7	80344360	80344361	rs4470970	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	7q21.11	CD36, SEMA3C	rs4470970-G	NR	5E-8	(AA)			Affymetrix, Illumina [NR] (imputed)	N
1197	chr7	80344360	80344361	rs4470970	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	7q21.11	CD36, SEMA3C	rs4470970-G	NR	2E-8				Affymetrix, Illumina [NR] (imputed)	N
1197	chr7	80344360	80344361	rs4470970	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	7q21.11	CD36, SEMA3C	rs4470970-G	NR	5E-6		0.018	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1197	chr7	80344360	80344361	rs4470970	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	7q21.11	CD36, SEMA3C	rs4470970-G	NR	2E-7	(AA)	0.02	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1198	chr7	80368096	80368097	rs144501645	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Cardio-cerebrovascular disease in dyslipidemia	1,039 Korean ancestry cases, 19,727 Korean ancestry controls	NA	7q21.11		rs144501645-C	0.02519	5E-6		1.716	[1.36199999999999-2.161]	Affymetrix [7975321] (imputed)	N
1198	chr7	80387315	80387316	rs76627715	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	7q21.11	SEMA3C	rs76627715-T		1E-9		0.216	unit increase	Affymetrix [at least 2696785] (imputed)	N
1198	chr7	80387765	80387766	rs1058425	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	7q21.11	SEMA3C	rs1058425-T	0.188488	3E-9		0.016890367	[0.011-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1198	chr7	80443176	80443177	rs7786327	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	7q21.11		rs7786327-A	0.27	2E-12		7.05	z score increase	Affymetrix [9061022] (imputed)	N
1198	chr7	80443176	80443177	rs7786327	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	7q21.11	NR	rs7786327-A	0.3091	2E-12				NR [9056863] (imputed)	N
1198	chr7	80453743	80453744	rs12670551	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	7q21.11		rs12670551-G	0.32	6E-14		7.5	z score increase	Affymetrix [9061022] (imputed)	N
1199	chr7	80492356	80492357	rs60839105	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7q21.11	NR	rs60839105-C	NR	2E-6		0.212	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1199	chr7	80492356	80492357	rs60839105	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7q21.11	NR	rs60839105-C	0.937	2E-6	(AA)	0.224	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1199	chr7	80492356	80492357	rs60839105	27036123	van Leeuwen EM	2016-04-01	J Med Genet	Meta-analysis of 49 549 individuals imputed with the 1000 Genomes Project reveals an exonic damaging variant in ANGPTL4 determining fasting TG levels.	HDL cholesterol	50,823 European ancestry individuals, 703 East Asian ancestry individuals, 6,476 African American individuals, 1,407 Hispanic individuals	71,921 European ancestry individuals, 9,992 Indian Asian ancestry individuals, 2,685 African American/Afro-Caribbean individuals	7q21.11	SEMA3C	rs60839105-T	0.07	1E-8		2.948	[1.93-3.96] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1199	chr7	80546149	80546150	rs139811700	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	7q21.11		rs139811700-?	NR	8E-11				NR [~ 8900000] (imputed)	N
1199	chr7	80547390	80547391	rs144517871	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	7q21.11	NR	rs144517871-?	NR	4E-12	(CCL24)	1.25619	[0.9-1.61] unit increase	Illumina [11901634] (imputed)	N
1199	chr7	80570141	80570142	rs10262428	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	7q21.11	SEMA3C	rs10262428-G	NR	6E-9		0.0172605	[0.011-0.023] unit decrease	Affymetrix [319769] (imputed)	N
1199	chr7	80570141	80570142	rs10262428	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	7q21.11	SEMA3C	rs10262428-G	NR	4E-9		0.0174505	[0.012-0.023] unit decrease	Affymetrix [319769] (imputed)	N
1199	chr7	80570141	80570142	rs10262428	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	7q21.11	SEMA3C	rs10262428-T	0.675	7E-8	(SEMA3C, 6448_36_3)	0.14383543	[0.092-0.196] unit increase	Illumina [> 1000000] (imputed)	N
1199	chr7	80570561	80570562	rs1019016	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	7q21.11	SEMA3C	rs1019016-G	NR	9E-15		0.0231722	[0.017-0.029] unit increase	Affymetrix [321788] (imputed)	N
1199	chr7	80570561	80570562	rs1019016	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	7q21.11	SEMA3C	rs1019016-G	NR	4E-9		0.0169108	[0.011-0.023] unit increase	Affymetrix [321016] (imputed)	N
1199	chr7	80570561	80570562	rs1019016	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	7q21.11	SEMA3C	rs1019016-T	0.581	2E-12	(Semaphorin-3C, SEMA3C.6448.36.3)	0.18	[0.14-0.22] unit increase	Affymetrix [10572788] (imputed)	N
1199	chr7	80570870	80570871	rs917191	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	7q21.11	SEMA3C	rs917191-G	NR	1E-16		0.0238416	[0.018-0.029] unit decrease	Affymetrix [319769] (imputed)	N
1199	chr7	80570870	80570871	rs917191	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	7q21.11	SEMA3C	rs917191-G	NR	4E-17		0.0241779	[0.019-0.03] unit decrease	Affymetrix [319769] (imputed)	N
1199	chr7	80570870	80570871	rs917191	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	7q21.11	NR	rs917191-?	NR	3E-13				Affymetrix [~ 8270000] (imputed)	N
1199	chr7	80570870	80570871	rs917191	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	7q21.11		rs917191-?	NR	1E-11				NR [~ 8900000] (imputed)	N
1199	chr7	80570870	80570871	rs917191	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	7q21.11	NR	rs917191-C	0.5706	5E-14		0.0138	[0.01-0.017] unit increase	NR [~ 27400000] (imputed)	N
1199	chr7	80570870	80570871	rs917191	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	7q21.11	NR	rs917191-C	0.5704	2E-7		0.0095	[0.006-0.013] unit increase	NR [~ 27400000] (imputed)	N
1199	chr7	80587736	80587737	rs740210	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	7q21.11	SEMA3C	rs740210-A	NR	2E-9		0.0185061	[0.012-0.025] unit decrease	Affymetrix [319769] (imputed)	N
1199	chr7	80587736	80587737	rs740210	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	7q21.11	SEMA3C	rs740210-A	NR	2E-9		0.0186261	[0.013-0.025] unit decrease	Affymetrix [319769] (imputed)	N
1199	chr7	80593665	80593666	rs7809112	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	7q21.11	SEMA3C	rs7809112-C	NR	3E-8		0.01618	[0.01-0.022] unit decrease	Affymetrix [319769] (imputed)	N
1199	chr7	80593665	80593666	rs7809112	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	7q21.11	SEMA3C	rs7809112-C	NR	3E-8		0.0161775	[0.01-0.022] unit decrease	Affymetrix [319769] (imputed)	N
1199	chr7	80596716	80596716	rs377171474	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	7q21.11	SEMA3C	rs377171474-G	NR	2E-8		0.0165143	[0.011-0.022] unit decrease	Affymetrix [321788] (imputed)	N
1199	chr7	80599356	80599357	rs4236644	19414484	Johnson AD	2009-05-04	Hum Mol Genet	Genome-wide association meta-analysis for total serum bilirubin levels.	Bilirubin levels	9,464 individuals	NA	7q21.11	SEMA3C	rs4236644-A	0.26	2E-6		0.02	[0.00-0.04] umol/l decrease in log(tbil)	Affymetrix, Illumina [2555103] (imputed)	N
1200	chr7	80623931	80623932	rs7777015	32624584	Yousaf A	2020-07-05	Transl Psychiatry	Quantitative genome-wide association study of six phenotypic subdomains identifies novel genome-wide significant variants in autism spectrum disorder.	Autism spectrum disorders (peer interaction)	2,509 individuals	NA	7q21.11	intergenic	rs7777015-?	NR	4E-6		0.321	NR unit increase	Illumina [6900500] (imputed)	N
1200	chr7	80627182	80627183	rs9969152	32624584	Yousaf A	2020-07-05	Transl Psychiatry	Quantitative genome-wide association study of six phenotypic subdomains identifies novel genome-wide significant variants in autism spectrum disorder.	Autism spectrum disorders (peer interaction)	2,509 individuals	NA	7q21.11	intergenic	rs9969152-?	NR	8E-6		0.316	NR unit increase	Illumina [6900500] (imputed)	N
1200	chr7	80636013	80636014	rs80105877	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	7q21.11	SEMA3C, HGF	rs80105877-G	NR	1E-7		1.45405	[0.91-1.99] unit decrease	Illumina [at least 950000] (imputed)	N
1200	chr7	80657981	80657982	rs76622811	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7q21.11	NR	rs76622811-C	0.01045	2E-9	(RAB14)	0.03158	NR unit increase	Illumina [1671387] (imputed)	N
1200	chr7	80667780	80667781	rs9641968	29855537	Hirata T	2018-05-31	Sci Rep	Japanese GWAS identifies variants for bust-size, dysmenorrhea, and menstrual fever that are eQTLs for relevant protein-coding or long non-coding RNAs.	Menstruation quality of life impact (stiff neck)	937 Japanese ancestry female cases, 4,797 Japanese ancestry female controls	944 Japanese ancestry female cases, 4,670 Japanese ancestry female controls	7q21.11	NR	rs9641968-C	0.394293589	5E-6		0.16574138	[0.094-0.237] unit increase	Affymetrix [536506]	N
1200	chr7	80702988	80702989	rs118171946	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7q21.11	NR	rs118171946-G	0.02265	9E-10	(FSCN1)	0.0444	NR unit increase	Illumina [1671387] (imputed)	N
1200	chr7	80702988	80702989	rs118171946	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7q21.11	NR	rs118171946-G	0.02265	2E-8	(FABP3)	0.02616	NR unit increase	Illumina [1671387] (imputed)	N
1201	chr7	80799833	80799834	rs500454	24569950	Hatemi PK	2014-02-26	Behav Genet	Genetic influences on political ideologies: twin analyses of 19 measures of political ideologies from five democracies and genome-wide findings from three populations.	Political ideology	11,388 European ancestry individuals from 6,758 families	NA	7q21.11	NR	rs500454-?		4E-6		0.4937	[0.28-0.70] unit increase	Illumina [> 269840] (imputed)	N
1201	chr7	80805174	80805175	rs1509911	26265699	Karol SE	2015-08-11	Blood	Genetics of glucocorticoid-associated osteonecrosis in children with acute lymphoblastic leukemia.	Glucocorticoid-induced osteonecrosis (age 10 years and older)	230 osteonecrosis cases, 1,238 treated controls	NA	7q21.11	SEMA3C	rs1509911-?	NR	5E-6				Affymetrix, Illumina [NR] (imputed)	N
1201	chr7	80836056	80836057	rs327712	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Intraocular pressure	133,492 European ancestry individuals	NA	7q21.11	SEMA3C	rs327712-C	0.57	4E-11				Affymetrix, Illumina [8002429] (imputed)	N
1201	chr7	80836056	80836057	rs327712	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Glaucoma	7,947 British ancestry cases, 119,318 British ancestry controls	NA	7q21.11	SEMA3C	rs327712-C	0.57	3E-8		1.1	NR	Affymetrix [at least 8002429] (imputed)	N
1201	chr7	80836056	80836057	rs327712	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	7q21.11	SEMA3C, LOC105369146	rs327712-C	0.5748	6E-15		0.1118	[0.083-0.14] unit increase	Affymetrix [~ 11900000] (imputed)	N
1201	chr7	80836708	80836709	rs17154917	25944848	Athanasiu L	2015-05-05	J Psychopharmacol	Genome-wide association study identifies common variants associated with pharmacokinetics of psychotropic drugs.	Pharmacokinetics of antipsychotic drugs in severe mental disorder (concentration drug ratio)	Up to 829 European ancestry cases	NA	7q21.11	intergenic	rs17154917-T	0.022	3E-7		0.6656	[NR] unit decrease	Affymetrix [686595]	N
1201	chr7	80838976	80838977	rs327716	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Intraocular pressure	101,939 European ancestry cases	NA	7q21.11	NR	rs327716-A		7E-11		0.1	[0.08-0.12] unit increase	NR [NR]	N
1201	chr7	80838976	80838977	rs327716	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Intraocular pressure	133,492 European ancestry individuals	NA	7q21.11	SEMA3C	rs327716-?	NR	4E-11		0.0869	[0.061-0.113] unit increase	Affymetrix, Illumina [up to 40000000] (imputed)	N
1201	chr7	80838976	80838977	rs327716	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Glaucoma	11,018 European ancestry cases, 126,068 European ancestry controls	NA	7q21.11	SEMA3C	rs327716-?	NR	2E-6		1.0802581	[1.04670171880977-1.11489028392142]	Affymetrix [up to 40000000] (imputed)	N
1201	chr7	80838976	80838977	rs327716	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	7q21.11	HGF	rs327716-A	0.581	6E-13		0.094	[0.069-0.119] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1201	chr7	80838976	80838977	rs327716	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	7q21.11	SEMA3C, LOC105369146	rs327716-A	0.5778	5E-13		0.1008	[0.072-0.129] unit increase	Affymetrix [~ 11900000] (imputed)	N
1201	chr7	80845529	80845529	rs59101260	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	23,963 European ancestry cases, 306,942 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	43,254 European ancestry cases, 1,471,118 European ancestry controls	7q21.11	SEMA3C, LOC105369146	rs59101260-G	NR	1E-14		0.0606	unit increase	Illumina [15409056] (imputed)	N
1201	chr7	80848821	80848822	rs327636	29891935	Choquet H	2018-06-11	Nat Commun	A multiethnic genome-wide association study of primary open-angle glaucoma identifies novel risk loci.	Glaucoma (primary open-angle)	10,523 European ancestry cases, 203,579 European ancestry controls, 411 Hispanic cases, 4,778 Hispanic controls, 463 East Asian ancestry cases, 4,907 East Asian ancestry controls, 298 African American cases, 1,549 African American controls, 204 South Asian ancestry cases, 4,916 South Asian ancestry controls, 272 African British cases, 4,831 African British controls, 144 mixed ancestry cases, 3,427 mixed ancestry controls	NA	7q21.11	SEMA3C, CACNA2D1	rs327636-A	NR	7E-9		1.08	1.06-1.12	Affymetrix [at least 665500] (imputed)	N
1201	chr7	80858943	80858944	rs1509922	29235454	Choquet H	2017-12-13	Nat Commun	A large multi-ethnic genome-wide association study identifies novel genetic loci for intraocular pressure.	Intraocular pressure	56,819 European ancestry individuals, 5,748 Hispanic/Latino individuals, 5,119 East Asian ancestry individuals, 2,070 African American individuals	37,930 European and Asian ancestry individuals	7q21.11	SEMA3C, HGF	rs1509922-?	NR	6E-12		0.09	[NR] unit increase	Affymetrix [at least 665000] (imputed)	N
1201	chr7	80867055	80867056	rs141710116	29395996	van Laarhoven A	2018-01-23	Lancet Infect Dis	Cerebral tryptophan metabolism and outcome of tuberculous meningitis: an observational cohort study.	CSF tryptophan concentration in tuberculous meningitis	130 individuals	NA	7q21.11	SEMA3C	rs141710116-?		6E-6		1.94	unit decrease	Illumina [4751257] (imputed)	N
1202	chr7	80901618	80901619	rs2525776	26993346	Schott JM	2016-03-15	Alzheimers Dement	Genetic risk factors for the posterior cortical atrophy variant of Alzheimer's disease.	Posterior cortical atrophy and Alzheimer's disease	293 cases, 10,547 healthy controls	NA	7q21.11	SEMA3C	rs2525776-?	NR	1E-8		3.3	[2.1-5.1]	Illumina [~ 5900000] (imputed)	N
1202	chr7	80950453	80950454	rs187256094	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial lung adenocarcinoma	775 European ancestry cases, 31,563 European ancestry controls	NA	7q21.11	NR	rs187256094-T	0.008	4E-6		3.95	[2.20-7.09]	Illumina [8672852] (imputed)	N
1202	chr7	81000796	81000797	rs10227249	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	7q21.11		rs10227249-A	0.42	2E-8		5.64	z score increase	Affymetrix [9061022] (imputed)	N
1203	chr7	81066469	81066470	rs79787332	31545351	Irvin MR	2019-09-23	Am J Hypertens	Genome wide association study of apparent treatment resistant hypertension in the CHARGE consortium: The CHARGE Pharmacogenetics Working Group.	Resistance to antihypertensive treatment in hypertension	931 European ancestry cases, 228 African American ancestry cases, 5,266 European ancestry controls, 1,817 African American ancestry controls	NA	7q21.11	SEMA3C, LOC100128317	rs79787332-T	NR	2E-6		1.56	[1.29-1.87]	Affymetrix, Illumina [NR] (imputed)	N
1203	chr7	81077980	81077981	rs76371378	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Hepatocyte growth factor levels	8,292 Finnish ancestry individuals	NA	7q21.11	NR	rs76371378-C		6E-6		0.2912	[0.17-0.42] SD units increase	NR [10700000] (imputed)	N
1204	chr7	81218317	81218318	rs7806852	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 5)	3,566 European ancestry individuals	4,680 European ancestry individuals	7q21.11		rs7806852-G	0.172524897	2E-8				Illumina [7417619] (imputed)	N
1204	chr7	81260420	81260421	rs10234213	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	7q21.11	NR	rs10234213-G	NR	1E-7	(GEE model)	1.1717	[0.74-1.6] unit decrease	NR [NR] (imputed)	N
1205	chr7	81329062	81329063	rs149351591	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	7q21.11	NR	rs149351591-G	0.997276	8E-10		0.0490633	[0.033-0.066] unit increase	Affymetrix [16582909] (imputed)	N
1205	chr7	81329062	81329063	rs149351591	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	7q21.11	NR	rs149351591-G	0.997276	4E-7		0.0468971	[0.029-0.065] unit increase	Affymetrix [16582965] (imputed)	N
1205	chr7	81349411	81349412	rs5745709	22179738	Lai HM	2011-12-16	Rheumatology (Oxford)	Gout and type 2 diabetes have a mutual inter-dependent effect on genetic risk factors and higher incidences.	Gout	20 Han Chinese ancestry male gout cases, 42 Han Chinese ancestry male controls	NA	7q21.11	HGF	rs5745709-?		1E-7				Illumina [479403]	N
1205	chr7	81358074	81358075	rs5745695	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	7q21.11	HGF	rs5745695-A	0.76	1E-11	(Hepatocyte growth factor, HGF.2681.23.2)	0.19	[0.13-0.25] unit increase	Affymetrix [10572788] (imputed)	N
1205	chr7	81359050	81359051	rs5745687	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	7q21.11	NR	rs5745687-T	0.06607	1E-8		0.002584	[0.0017-0.0035] unit increase	Affymetrix [NR] (imputed)	N
1205	chr7	81359050	81359051	rs5745687	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	7q21.11	NR	rs5745687-T	NR	2E-9		0.0307	[0.021-0.041] unit increase	Affymetrix [9000000] (imputed)	N
1205	chr7	81359050	81359051	rs5745687	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	7q21.11	NR	rs5745687-T	NR	9E-11		0.0331	[0.023-0.043] unit increase	Affymetrix [9000000] (imputed)	N
1205	chr7	81359050	81359051	rs5745687	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Hepatocyte growth factor levels	21,758 European ancestry individuals	9,173 individuals	7q21.11		rs5745687-T	0.061	4E-24		0.2053	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1205	chr7	81359050	81359051	rs5745687	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Hepatocyte growth factor levels	8,292 Finnish ancestry individuals	NA	7q21.11	HGF	rs5745687-C		3E-14		0.3072	[0.23-0.39] SD units increase	NR [10700000] (imputed)	N
1205	chr7	81359050	81359051	rs5745687	25998175	Larson NB	2015-05-22	Ann Hum Genet	Trans-ethnic meta-analysis identifies common and rare variants associated with hepatocyte growth factor levels in the Multi-Ethnic Study of Atherosclerosis (MESA).	Hepatocyte growth factor levels	1,550 African American individuals, 762 Chinese ancestry individuals, 2,477 European ancestry individuals, 1,412 Hispanic individuals	NA	7q21.11	HGF	rs5745687-?	NR	8E-12	(EA)	85.7	[61.2-110.2] unit decrease	Illumina [377173]	N
1205	chr7	81359050	81359051	rs5745687	25998175	Larson NB	2015-05-22	Ann Hum Genet	Trans-ethnic meta-analysis identifies common and rare variants associated with hepatocyte growth factor levels in the Multi-Ethnic Study of Atherosclerosis (MESA).	Hepatocyte growth factor levels	1,550 African American individuals, 762 Chinese ancestry individuals, 2,477 European ancestry individuals, 1,412 Hispanic individuals	NA	7q21.11	HGF	rs5745687-?	NR	3E-17		89.1	[68.52-109.68] unit decrease	Illumina [377173]	N
1205	chr7	81359050	81359051	rs5745687	25552591	Lieb W	2014-12-31	Circ Cardiovasc Genet	Genome-wide association study for endothelial growth factors.	Endothelial growth factor levels	up to 3,574 European ancestry individuals	up to 3,184 European ancestry individuals	7q21.11	HGF	rs5745687-T	0.077	4E-19	(HGF)	0.099	[0.077-0.121] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1205	chr7	81361573	81361574	rs118003389	32238385	Nakayama A	2020-04-01	Ann Rheum Dis	Subtype-specific gout susceptibility loci and enrichment of selection pressure on ABCG2 and ALDH2 identified by subtype genome-wide meta-analyses of clinically defined gout patients.	Gout (normal type)	92 Japanese ancestry male cases, 4,554 Japanese ancestry male controls	NA	7q21.11	HGF	rs118003389-G	0.047	2E-7		3.71	[2.27-6.05]	Illumina [7206774] (imputed)	N
1205	chr7	81365788	81365789	rs12671260	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Transverse temporal cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	7q21.11	HGF	rs12671260-?		3E-6				Illumina [4322238] (imputed)	N
1205	chr7	81382689	81382690	rs984534	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HGF	5,364 Icelandic ancestry individuals	NA	7q21.11		rs984534-C	0.215	1E-12		0.163092	[0.12-0.21] unit decrease	Illumina [7506463] (imputed)	N
1205	chr7	81382689	81382690	rs984534	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	7q21.11	HGF	rs984534-T	0.78515625	1E-7	(HGF, 2681_23_2)	0.1581715	[0.1-0.217] unit increase	Illumina [> 1000000] (imputed)	N
1206	chr7	81407079	81407080	rs1558001	28598419	Hong X	2017-06-09	Nat Commun	Genome-wide approach identifies a novel gene-maternal pre-pregnancy BMI interaction on preterm birth.	Spontaneous preterm birth (maternal effect)	461 African American spontaneous preterm birth mothers, 1,035 African American term birth mothers	NA	7q21.11	HGF, CACNA2D1	rs1558001-T	0.21	3E-8		1.7	1.4-2.0	Illumina [13317377] (imputed)	N
1206	chr7	81407079	81407080	rs1558001	28598419	Hong X	2017-06-09	Nat Commun	Genome-wide approach identifies a novel gene-maternal pre-pregnancy BMI interaction on preterm birth.	Gestational age at birth (maternal effect)	698 African American preterm birth mothers, 1,035 African American term birth mothers	NA	7q21.11	HGF, CACNA2D1	rs1558001-T	0.21	1E-7		0.81	[0.52-1.10] unit decrease	Illumina [13317377] (imputed)	N
1206	chr7	81415782	81415783	rs17501560	30213928	Went M	2018-09-13	Nat Commun	Identification of multiple risk loci and regulatory mechanisms influencing susceptibility to multiple myeloma.	Multiple myeloma	8,197 European ancestry cases, 241,468 European ancestry controls	1,777 European ancestry cases, 6,088 European ancestry controls	7q21.11	NR	rs17501560-A	0.82	1E-7		1.12		Illumina [up to 10291845] (imputed)	N
1206	chr7	81418595	81418596	rs10252734	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	7q21.11	NR	rs10252734-G	0.4019	3E-9				NR [9056863] (imputed)	N
1206	chr7	81418595	81418596	rs10252734	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	7q21.11	NR	rs10252734-?		4E-8	(Uncinate fasciculus)			NR [8955960] (imputed)	N
1206	chr7	81437872	81437873	rs4732409	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	7q21.11		rs4732409-A	0.39	2E-10		6.39	z score increase	Affymetrix [9061022] (imputed)	N
1206	chr7	81437872	81437873	rs4732409	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	7q21.11		rs4732409-A	0.39	2E-10		6.4	z score increase	Affymetrix [9061022] (imputed)	N
1206	chr7	81501788	81501789	rs78700728	33594131	Donati G	2021-02-16	Sci Rep	Evidence for specificity of polygenic contributions to attainment in English, maths and science during adolescence.	Academic attainment (maths)	6,017 European ancestry adolescents	NA	7q21.11	NR	rs78700728-G	NR	8E-6		0.09	[0.051-0.129] unit increase	Illumina [6319684] (imputed)	N
1206	chr7	81523665	81523666	rs201289551	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Hepatocyte growth factor levels	8,292 Finnish ancestry individuals	NA	7q21.11	NR	rs201289551-AC		2E-11		0.3123	[0.22-0.4] SD units increase	NR [10700000] (imputed)	N
1207	chr7	81539208	81539209	rs368182220	34404248	Tsao YC	2021-08-18	Cephalalgia	Genome-wide association study reveals susceptibility loci for self-reported headache in a large community-based Asian population.	Headache	2,084 Taiwanese ancestry cases, 11,822 Taiwanese ancestry controls	NA	7q21.11		rs368182220-G	3.0E-4	4E-7		8.134	[3.093-21.39]	Affymetrix [7842171] (imputed)	N
1207	chr7	81552010	81552011	rs1229480	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	7q21.11		rs1229480-C	NR	2E-10		0.0162	[0.011-0.021] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
1207	chr7	81564121	81564122	rs1229492	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	7q21.11		rs1229492-C	NR	7E-11		0.0159	[0.011-0.021] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
1207	chr7	81564121	81564122	rs1229492	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	7q21.11	NR	rs1229492-T	0.267531	1E-32		0.0108618	[0.009-0.0127] unit increase	Affymetrix [16582909] (imputed)	N
1207	chr7	81564121	81564122	rs1229492	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	7q21.11	NR	rs1229492-T	0.268477	1E-18		0.0110051	[0.0084-0.0136] unit increase	Affymetrix [16582621] (imputed)	N
1207	chr7	81564121	81564122	rs1229492	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	7q21.11	NR	rs1229492-T	0.267531	9E-27		0.0111575	[0.0091-0.0132] unit increase	Affymetrix [16582965] (imputed)	N
1207	chr7	81564121	81564122	rs1229492	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	7q21.11	NR	rs1229492-T	0.268477	6E-18		0.0114669	[0.0087-0.0142] unit increase	Affymetrix [16582614] (imputed)	N
1207	chr7	81568749	81568750	rs1229498	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	7q21.11	NR	rs1229498-T	0.277661	7E-9		0.0189866	[0.012-0.026] unit increase	Affymetrix [16577313] (imputed)	N
1207	chr7	81568749	81568750	rs1229498	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	7q21.11	NR	rs1229498-T	0.27526	2E-16		0.0112516	[0.0085-0.014] unit increase	Affymetrix [16585854] (imputed)	N
1207	chr7	81568749	81568750	rs1229498	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	7q21.11	NR	rs1229498-T	0.27526	2E-12		0.0111695	[0.008-0.0143] unit increase	Affymetrix [16585866] (imputed)	N
1207	chr7	81591114	81591143	rs72063149	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	7q21.11	NR	rs72063149-G	NR	3E-9		0.0161	[0.011-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
1208	chr7	81689237	81689238	rs36167844	32890573	Yan Q	2020-09-02	J Allergy Clin Immunol	A genome-wide association study of asthma hospitalizations in adults.	Exacerbations requiring hospitalisation in asthma	1,658 British ancestry cases, 32,509 British ancestry controls	NA	7q21.11	NR	rs36167844-G	0.94	2E-6		1.39	[NR]	Affymetrix [87696888] (imputed)	N
1208	chr7	81703781	81703782	rs137878917	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Hepatocyte growth factor levels	8,292 Finnish ancestry individuals	NA	7q21.11	NR	rs137878917-G		6E-6		0.2885	[0.16-0.41] SD units increase	NR [10700000] (imputed)	N
1208	chr7	81728515	81728516	rs258668	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Subjective wellbeing conditioned on Townsend deprivation index (multi-trait conditioning and joint analysis)	298,420 European ancestry individuals	NA	7q21.11		rs258668-?	NR	6E-9				NR [NR]	N
1208	chr7	81728515	81728516	rs258668	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Subjective well-being	298,420 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	7q21.11	NR	rs258668-T	0.5755	8E-7		0.0132	[0.008-0.0184] unit decrease	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
1208	chr7	81731445	81731446	rs258671	23006423	Niu N	2012-09-24	BMC Cancer	Genetic association with overall survival of taxane-treated lung cancer patients - a genome-wide association study in human lymphoblastoid cell lines followed by a clinical association study.	Response to taxane treatment (docetaxel)	96 African American lymphoblastoid cell lines, 96 European ancestry lymphoblastoid cell lines, 96 Han Chinese ancestry lymphoblastoid cell lines	NA	7q21.11	CACNA2D1	rs258671-?	NR	1E-6				Affymetrix, Illumina [~ 1300000]	N
1208	chr7	81733427	81733428	rs258677	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Subjective wellbeing conditioned on educational attainment (multi-trait conditioning and joint analysis)	298,420 European ancestry individuals	NA	7q21.11		rs258677-?	NR	2E-8				NR [NR]	N
1208	chr7	81733427	81733428	rs258677	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Subjective wellbeing conditioned on cognitive performance (multi-trait conditioning and joint analysis)	298,420 European ancestry individuals	NA	7q21.11		rs258677-?	NR	1E-8				NR [NR]	N
1208	chr7	81733427	81733428	rs258677	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Positive affect	180,281 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	7q21.11	NR	rs258677-T	0.4116	4E-7		0.0176	[0.011-0.024] unit increase	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
1208	chr7	81734210	81734211	rs258681	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Subjective wellbeing conditioned on self-rated math ability (multi-trait conditioning and joint analysis)	298,420 European ancestry individuals	NA	7q21.11		rs258681-?	NR	2E-8				NR [NR]	N
1208	chr7	81734210	81734211	rs258681	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Subjective wellbeing conditioned on highest math class (multi-trait conditioning and joint analysis)	298,420 European ancestry individuals	NA	7q21.11		rs258681-?	NR	2E-8				NR [NR]	N
1208	chr7	81734210	81734211	rs258681	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Subjective wellbeing conditioned on average household income before tax (multi-trait conditioning and joint analysis)	298,420 European ancestry individuals	NA	7q21.11		rs258681-?	NR	4E-8				NR [NR]	N
1208	chr7	81737185	81737186	rs5014756	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	L1-L4 bone mineral density x serum urate levels interaction	2,207 men, 2,354 women	NA		CACNA2D1	rs5014756-?	NR	4E-6	(female)	0.317746	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1208	chr7	81768171	81768172	rs117576300	24159190	Seppala I	2013-10-24	Eur Heart J	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Asymmetrical dimethylarginine levels	5110 European ancestry individuals	NA	7q21.11	intergenic	rs117576300-A	0.028	6E-6		0.3	[0.17-0.43] unit decrease	Affymetrix, Illumina [10085758] (imputed)	N
1208	chr7	81782513	81782514	rs6942458	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	7q21.11	CACNA2D1	rs6942458-G	0.219	6E-7	(HRmax )	0.05	[NR] bpm increase	Illumina [899892]	N
1208	chr7	81786219	81786220	rs2367911	20889312	Wang KS	2010-10-01	Schizophr Res	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	7q21.11	NR	rs2367911-?	NR	5E-6		1.771	[NR]	Affymetrix [722112]	N
1209	chr7	81814718	81814719	rs150202331	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Halarcobacter abundance in stool	5,959 Finnish ancestry individuals	NA	7q21.11		rs150202331-C	0.029059	2E-8		0.111428	[0.073-0.15] unit decrease	Illumina [7980478] (imputed)	N
1209	chr7	81839552	81839553	rs11978472	23665963	Dubinsky MC	2013-05-09	Inflamm Bowel Dis	Multidimensional prognostic risk assessment identifies association between IL12B variation and surgery in Crohn's disease.	Crohn's disease (need for surgery)	239 European ancestry cases that required surgery within 5 year, 375 European ancestry cases that did not require surgery within 5 years	NA	7q21.11	CACNA2D1	rs11978472-?	0.70	6E-6		2.0	[1.43-2.50]	Illumina [483359]	N
1209	chr7	81847650	81847651	rs10954668	20708005	Chalasani N	2010-08-10	Gastroenterology	Genome-wide association study identifies variants associated with histologic features of nonalcoholic Fatty liver disease.	Non-alcoholic fatty liver disease histology (lobular)	236 European ancestry cases	NA	7q21.11	CACNA2D1	rs10954668-A	0.33	7E-6		0.32	[NR] unit decrease	Illumina [324623]	N
1209	chr7	81857892	81857893	rs929351	20848476	Haritunians T	2010-11-01	Inflamm Bowel Dis	Genetic predictors of medically refractory ulcerative colitis.	Ulcerative colitis	324 European ancestry medically refractory ulcerative colitis cases, 537 European ancestry non-medically refractory ulcerative colitis cases, 2,601 European ancestry controls	NA	7q21.11	CACNA2D1	rs929351-C	NR	8E-6	(Analysis II)			Illumina [313720]	N
1209	chr7	81880913	81880914	rs17176546	29317602	Hall LS	2018-01-10	Transl Psychiatry	Genome-wide meta-analyses of stratified depression in Generation Scotland and UK Biobank.	Major depressive disorder	6,997 European ancestry female cases, 16,172 European ancestry female controls, 3,852 European ancestry male cases, 16,034 European ancestry male controls	NA	7q21.11	CACNA2D1	rs17176546-A	0.04	8E-7	(females)	0.26	[0.16-0.36] unit increase	Affymetrix, Illumina [7105178] (imputed)	N
1209	chr7	81906089	81906090	rs138663667	31626034	Thomsen H	2019-10-11	Melanoma Res	Genome-wide study on uveal melanoma patients finds association to DNA repair gene TDP1.	Uveal melanoma (TNM stage 3 or 4)	255 European ancestry cases, 5,199 European ancestry controls	NA	7q21.11		rs138663667-T	0.07	4E-7		2.04		Illumina [10258281] (imputed)	N
1210	chr7	81924883	81924884	rs113865535	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (90 or 130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	7q21.11	CACNA2D1	rs113865535-?	NR	6E-6		0.128	[0.057-0.199] unit decrease	Illumina [at least 13000000] (imputed)	N
1210	chr7	81981169	81981170	rs17156195	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	7q21.11	NR	rs17156195-?	NR	3E-15				Affymetrix [NR]	N
1210	chr7	81987288	81987289	rs17179503	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal cancer	978 Austrian ancestry colorectal cancer cases, 636 Austrian ancestry advanced colorectal adenoma cases, , 855 Austrian ancestry controls	NA	7q21.11	Intergenic	rs17179503-?		6E-6		1.8409425	[NR]	Affymetrix [492217] (imputed)	N
1210	chr7	82002216	82002217	rs4732446	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	7q21.11	NR	rs4732446-?	NR	5E-6	(Native Hawaiian)	1.0501	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1210	chr7	82013917	82013920	rs71522613	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Phoneme awareness	3,093 European ancestry individuals	NA	7q21.11	CACNA2D1	rs71522613-TGAA	0.8484575	4E-6		0.285971	[0.16-0.41] unit increase	Illumina [6969139] (imputed)	N
1210	chr7	82043989	82043990	rs17156280	26845276	Ikeda M	2016-01-01	J Clin Psychiatry	Genome-wide environment interaction between depressive state and stressful life events.	Major depressive disorder (stressful life events interaction)	308 East Asian ancestry prepressive cases, 780 East Asian ancestry non-depressive controls	NA	7q21.11	CACNA2D1	rs17156280-C	0.142	2E-7				Illumina [418225]	N
1210	chr7	82047101	82047102	rs2299187	27173062	Azad AK	2016-05-09	Cancer Epidemiol	A genome-wide association study of non-HPV-related head and neck squamous cell carcinoma identifies prognostic genetic sequence variants in the MAP-kinase and hormone pathways.	Survival in head and neck cancer	489 European ancestry cases, 26 Asian, African or First Nation ancestry cases	470 European ancestry cases, 57 Asian ancestry cases, 11 African American ancestry cases, 28 other ancestry cases	7q21.11	CACNA2D1	rs2299187-A	0.02	8E-6		3.26	[1.94-5.47]	Illumina [543873]	N
1211	chr7	82058446	82058447	rs10233444	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	7q21.11		rs10233444-C	NR	1E-8		0.0096	[0.0063-0.0129] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
1211	chr7	82066456	82066457	rs7792856	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling nervous	373,121 European ancestry individuals	NA	7q21.11	CACNA2D1	rs7792856-T	0.393713	2E-8		5.66	z score increase	NR [10847151] (imputed)	N
1211	chr7	82072957	82072958	rs6954596	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	7q21.11		rs6954596-G	NR	3E-8		0.0091	[0.006-0.0122] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
1211	chr7	82082437	82082438	rs10268774	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	7q21.11	CACintergenic2D1, LOC442707	rs10268774-G	0.001	1E-6		34.08	[3.52-329.69]	Illumina [1556551]	N
1211	chr7	82097923	82097924	rs4728514	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	7q21.11	NR	rs4728514-?	NR	2E-6		0.0082051	[0.0048-0.0116] unit increase	Affymetrix [805426] (imputed)	N
1211	chr7	82115239	82115240	rs10262537	23934736	Yu B	2013-08-11	Genet Epidemiol	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels (Dihydroxy docosatrienoic acid)	1,260 African American individuals	NA	7q21.11	CACNA2D1	rs10262537-C		7E-6		0.08	[0.04-0.11] unit increase	Affymetrix [~ 2500000] (imputed)	N
1211	chr7	82142392	82142393	rs7807011	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	7q21.11	PCLO	rs7807011-?	NR	8E-6	(LPC 22:6)	0.2631941	[0.15-0.38] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1211	chr7	82144311	82144312	rs9642136	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	7q21.11	PCLO	rs9642136-?	NR	7E-6	(LPC 20:4)	0.25357556	[0.14-0.36] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1211	chr7	82147301	82147302	rs10486963	28476931	Piaggi P	2017-05-05	Diabetes	A Genome-Wide Association Study Using a Custom Genotyping Array Identifies Variants in GPR158 Associated With Reduced Energy Expenditure in American Indians.	Energy expenditure (24h)	419 Pima Indian ancestry individuals	NA	7q21.11	CACNA2D1, PCLO	rs10486963-T	0.87	6E-6		66.71365	[37.93-95.49] kcal/day decrease	Affymetrix [491265]	N
1211	chr7	82157288	82157289	rs35653049	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	7q21.11	intergenic	rs35653049-C	NR	3E-7	(EA)			Illumina [up to 11995908] (imputed)	N
1211	chr7	82157288	82157289	rs35653049	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	7q21.11	intergenic	rs35653049-C	NR	3E-7				Illumina [up to 11995908] (imputed)	N
1212	chr7	82218456	82218457	rs10486973	33109212	Chang H	2020-10-28	BMC Med	Genetic architecture of cardiometabolic risks in people living with HIV.	HDL cholesterol levels in HIV infection	3,095 European ancestry individuals, 3,189 African American individuals	NA	7q21.11	CACNA2D1, PCLO	rs10486973-?		4E-6	(EA)	0.1312855	[0.076-0.187] unit increase	Illumina [13620258] (imputed)	N
1212	chr7	82236172	82236173	rs60708498	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7q21.11	NR	rs60708498-T	0.01394	3E-8	(SPRYD4)	0.1754	NR unit increase	Illumina [1671387] (imputed)	N
1212	chr7	82248267	82248268	rs11312945	34269803	Casto A	2021-07-16	Blood	Genetic Variants Associated with Cytomegalovirus Infection after Allogeneic Hematopoietic Cell Transplantation.	Cytomegalovirus high-level reactivation after allogeneic hematopoietic cell transplantation (donors)	up to 1,301 European ancestry donors	up to 868 European ancestry donors	7q21.11		rs11312945-?	NR	8E-8		0.24	[0.13-0.44]	Affymetrix, Illumina [29826485] (imputed)	N
1213	chr7	82337858	82337859	rs2371208	17903295	Lunetta KL	2007-09-19	BMC Med Genet	Genetic correlates of longevity and selected age-related phenotypes: a genome-wide association study in the Framingham Study.	Aging traits	1,345 individuals from 330 families	NA	7q21.11	intergenic	rs2371208-?	NR	3E-6	(age at death)			Affymetrix [70897]	N
1213	chr7	82370820	82370821	rs10250565	30718454	Arnau-Soler A	2019-02-04	Transl Psychiatry	Genome-wide by environment interaction studies of depressive symptoms and psychosocial stress in UK Biobank and Generation Scotland.	Depressive symptoms x independent stressful life events interaction (1df test)	4,919 European ancestry individuals	NA	7q21.11	PCLO	rs10250565-A	0.03151	3E-6		0.131706	NR unit decrease	Illumina [560351]	N
1213	chr7	82382623	82382624	rs964714	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental longevity (mother's age at death)	52,776 middle-aged British individuals	NA	7q21.11	NR	rs964714-?	NR	5E-6		0.064337	[0.037-0.092] unit increase	Affymetrix [9658292] (imputed)	N
1213	chr7	82388713	82388714	rs13438494	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms (MTAG)	955,012 individuals	NA	7q21.11	NR	rs13438494-?		8E-9				NR [520857]	N
1213	chr7	82396429	82396430	rs75066840	30287806	Zhou H	2018-10-04	Transl Psychiatry	Genome-wide association study identifies glutamate ionotropic receptor GRIA4 as a risk gene for comorbid nicotine dependence and major depression.	Nicotine dependence and major depression (severity of comorbidity)	3,724 African American individuals	NA	7q21.11	PCLO	rs75066840-C	0.0474	4E-6		1.202	[0.69-1.71] unit increase	Illumina [9520174] (imputed)	N
1213	chr7	82422404	82422405	rs17156675	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Bipolar disorder (MTAG)	at least 20,352 European ancestry cases, at least 31,358 European ancestry controls	NA	7q21.11	NR	rs17156675-T	0.3022	3E-8		0.0655681	[0.042-0.089] unit increase	NR [NR]	N
1213	chr7	82433827	82433828	rs6467912	33169155	Bigdeli TB	2020-11-10	Schizophr Bull	Genome-Wide Association Studies of Schizophrenia and Bipolar Disorder in a Diverse Cohort of US Veterans.	Schizophrenia	44,794 European ancestry cases, 7,509 African American cases, 1,234 Latino cases, 112,777 European ancestry controls, 8,337 African American controls, 3,090 Latino controls	NA	7q21.11	PCLO	rs6467912-C	NR	2E-8		1.05	[1.03-1.07]	Affymetrix [up to 49134253] (imputed)	N
1213	chr7	82435877	82435878	rs6954078	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	7q21.11	PCLO	rs6954078-?		1E-23				Affymetrix, Illumina [NR] (imputed)	N
1213	chr7	82440192	82440193	rs17284668	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Schizophrenia (MTAG)	940,613 European ancestry individuals	NA			rs17284668-?	NR	5E-8				NR [2625067]	N
1213	chr7	82440919	82440920	rs17212432	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Schizophrenia (MTAG)	at least 33,640 European ancestry cases, at least 43,456 European ancestry controls	NA	7q21.11	NR	rs17212432-T	0.4891	3E-8		0.059977196	[0.039-0.081] unit increase	NR [NR]	N
1214	chr7	82444371	82444372	rs2189246	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	7q21.11	NR	rs2189246-A	NR	5E-6		1.05	[NR]	Illumina [7158791] (imputed)	N
1214	chr7	82448099	82448100	rs2522831	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Neuropsychiatric disorders	19,099 European ancestry attention deficit hyperactivity disorder cases, 18,381 European ancestry autism spectrum disorder cases, 20,352 European ancestry bipolar disorder cases, 170,756 European ancestry major depressive disorder cases, 33,640 European ancestry schizophrenia cases, 466,420 European ancestry controls	NA	7q21.11	NR	rs2522831-T	NR	1E-9		6.054	NR z score decrease	NR [NR]	N
1214	chr7	82448099	82448100	rs2522831	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Major depressive disorder (MTAG)	at least 170,756 European ancestry cases, at least 329,443 European ancestry controls	NA	7q21.11	NR	rs2522831-T	0.5261	9E-11		0.026728114	[0.019-0.035] unit decrease	NR [NR]	N
1214	chr7	82448099	82448100	rs2522831	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	7q21.11	PCLO	rs2522831-?		2E-8				NR [6786993] (imputed)	N
1214	chr7	82448404	82448405	rs2715147	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	7q21.11	NR	rs2715147-T	0.499113115272733	1E-9		0.005562595	[0.0038-0.0074] unit increase	NR [NR]	N
1214	chr7	82448404	82448405	rs2715147	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	7q21.11	NR	rs2715147-T	0.499113115272733	3E-9		0.0067472467	[0.0045-0.009] unit increase	NR [NR]	N
1214	chr7	82448404	82448405	rs2715147	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	7q21.11	NR	rs2715147-T	0.499113115272733	2E-9		0.008771977	[0.0059-0.0116] unit increase	NR [NR]	N
1214	chr7	82448404	82448405	rs2715147	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	7q21.11	NR	rs2715147-T	0.499113115272733	5E-9		0.0071583237	[0.0048-0.0096] unit increase	NR [NR]	N
1214	chr7	82448404	82448405	rs2715147	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	7q21.11	NR	rs2715147-T	0.499113115272733	2E-9		0.0055984315	[0.0038-0.0074] unit increase	NR [NR]	N
1214	chr7	82450034	82450035	rs2715148	21621269	Aragam N	2011-05-26	J Affect Disord	Genome-wide association analysis of gender differences in major depressive disorder in the Netherlands NESDA and NTR population-based samples.	Major depressive disorder	1,726 cases, 1,630 controls	NA	7q21.11	PCLO	rs2715148-?		1E-6				Perlegen [433556]	N
1214	chr7	82454403	82454404	rs2247523	30718901	Howard DM	2019-02-04	Nat Neurosci	Genome-wide meta-analysis of depression identifies 102 independent variants and highlights the importance of the prefrontal brain regions.	Depression	118,811 European ancestry cases, 327,427 European ancestry controls, 127,552 cases, 233,763 controls	414,055 European ancestry cases, 892,299 European ancestry controls	7q21.11	NR	rs2247523-G	0.4681	9E-14		1.0162601	[1.01-1.02]	NR [8098588] (imputed)	N
1214	chr7	82454403	82454404	rs2247523	20351715	Liu Y	2010-03-30	Mol Psychiatry	Meta-analysis of genome-wide association data of bipolar disorder and major depressive disorder.	Major depressive disorder	1,695 cases, 1,761 controls	NA	7q21.11	PCLO	rs2247523-?	NR	5E-6				Perlegen [1893617] (imputed)	N
1214	chr7	82468373	82468374	rs2715157	28540843	Mbarek H	2017-05-25	Twin Res Hum Genet	Genome-Wide Significance for PCLO as a Gene for Major Depressive Disorder.	Major depressive disorder	1,942 European ancestry cases, 4,565 European ancestry controls	NA	7q21.11	PCLO	rs2715157-?	0.52	3E-8		1.27	[1.16-1.37]	Affymetrix [NR] (imputed)	N
1214	chr7	82485055	82485056	rs191938238	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CD36	5,363 Icelandic ancestry individuals	NA	7q21.11		rs191938238-C	0.01264	3E-12		0.566321	[0.41-0.73] unit decrease	Illumina [7506463] (imputed)	N
1214	chr7	82514088	82514089	rs34866621	31926635	Coleman JRI	2019-11-01	Biol Psychiatry	The Genetics of the Mood Disorder Spectrum: Genome-wide Association Analyses of More Than 185,000 Cases and 439,000 Controls.	Bipolar disorder or major depressive disorder	164,933 European ancestry major depressive disorder cases, 20,352 European ancestry bipolar disorder cases, 439,741 European ancestry controls	NA	7q21.11	NR	rs34866621-T	NR	2E-8		1.03	[1.02-1.04]	NR [NR] (imputed)	N
1214	chr7	82517480	82517481	rs117940079	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Grapefruit juice consumption	85,852 European ancestry individuals	39,924 European ancestry individuals	7q21.11	PCLO	rs117940079-G	0.0173	8E-7		0.0063	[0.0038-0.0088] unit increase	Affymetrix [~ 7740000] (imputed)	N
1214	chr7	82555668	82555669	rs2107828	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	7q21.11		rs2107828-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1214	chr7	82557227	82557228	rs10954695	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Schizoaffective disorder-bipolar type	977 European ancestry cases, 31,358 European ancestry controls	NA	7q21.11	NR	rs10954695-A	0.373	3E-7		1.30591	[NR]	NR [9372253] (imputed)	N
1216	chr7	82736334	82736335	rs6974227	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota (beta diversity)	858 Metropolitan French ancestry individuals	NA	7q21.11	NR	rs6974227-G	0.408	2E-6	(Unifrac metric)	4.615475	NR z-score increase	Illumina [5293637] (imputed)	N
1216	chr7	82743628	82743629	rs36106435	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Strep throat	52,487 European ancestry cases, 22,017 European ancestry controls	NA	7q21.11	NR	rs36106435-?	NR	4E-6		0.043	[0.025-0.061] unit decrease	Illumina [at least 560000] (imputed)	N
1217	chr7	82862522	82862523	rs6954803	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	7q21.11	SEMA3E	rs6954803-?	NR	4E-6	(glycerol)	0.20259058	[0.12-0.29] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1217	chr7	82919368	82919369	rs2214354	31311600	Namjou B	2019-07-17	BMC Med	GWAS and enrichment analyses of non-alcoholic fatty liver disease identify new trait-associated genes and pathways across eMERGE Network.	Alanine aminotransferase levels in non-alcoholic fatty liver disease	1,075 European ancestry individuals	NA	7q21.11	intergenic	rs2214354-C	0.333333	9E-6		0.176894	[0.099-0.255] unit decrease	NR [7263501] (imputed)	N
1217	chr7	82936908	82936909	rs16887442	30718901	Howard DM	2019-02-04	Nat Neurosci	Genome-wide meta-analysis of depression identifies 102 independent variants and highlights the importance of the prefrontal brain regions.	Depression	118,811 European ancestry cases, 327,427 European ancestry controls, 127,552 cases, 233,763 controls	414,055 European ancestry cases, 892,299 European ancestry controls	7q21.11	NR	rs16887442-T	0.4347	1E-11		1.015	[1.011-1.019]	NR [8098588] (imputed)	N
1217	chr7	82938543	82938544	rs73167871	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	7q21.11	ESMA3E	rs73167871-A	0.626	2E-9		0.081	[0.056-0.106] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1217	chr7	82939095	82939096	rs73167875	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Neuroticism	274,107 British ancestry individuals	NA	7q21.11	NR	rs73167875-A	0.2022	2E-8		0.01083	[0.0071-0.0146] unit decrease	NR [8968716] (imputed)	N
1217	chr7	82940748	82940749	rs62460794	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	7q21.11	NR	rs62460794-A	0.574956217733409	1E-8		0.0073255342	[0.0048-0.0098] unit decrease	NR [NR]	N
1217	chr7	82941862	82941863	rs59970005	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	7q21.11		rs59970005-?	NR	6E-10				NR [~ 8900000] (imputed)	N
1217	chr7	82945269	82945270	rs7789405	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	7q21.11	NR	rs7789405-T	0.57437550512813	1E-9		0.0056445096	[0.0038-0.0075] unit decrease	NR [NR]	N
1217	chr7	82945269	82945270	rs7789405	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	7q21.11	NR	rs7789405-T	0.57437550512813	1E-9		0.0069807973	[0.0047-0.0092] unit decrease	NR [NR]	N
1217	chr7	82945269	82945270	rs7789405	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	7q21.11	NR	rs7789405-T	0.57437550512813	8E-10		0.009103313	[0.0062-0.012] unit decrease	NR [NR]	N
1217	chr7	82945269	82945270	rs7789405	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	7q21.11	NR	rs7789405-T	0.57437550512813	8E-10		0.005825516	[0.004-0.0077] unit decrease	NR [NR]	N
1217	chr7	82968486	82968487	rs11768410	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	7q21.11	PCLO, SEMA3E	rs11768410-T	NR	8E-6		0.0864025	[0.048-0.124] unit decrease	Illumina [at least 950000] (imputed)	N
1218	chr7	82977123	82977124	rs3109167	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	7q21.11	Intergenic	rs3109167-T	0.4726721	9E-25	(EA, Semaphorin-3E)	0.4467	[0.36-0.53] unit increase	Affymetrix [509946]	N
1218	chr7	83001554	83001555	rs2723005	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	7q21.11	NR	rs2723005-?	NR	1E-14				Illumina [at least 7383741] (imputed)	N
1218	chr7	83006261	83006262	rs17284969	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	7q21.11	SEMA3E, AC079987.2	rs17284969-A	0.1220989	2E-65	(Semaphorin-3E)	1.072	[0.96-1.19] unit decrease	Affymetrix [509946]	N
1218	chr7	83007115	83007116	rs60909458	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	7q21.11	SEMA3E	rs60909458-A	0.8434375	1E-331	(SEMA3E, 5363_51_3)	1.168557	[1.12-1.22] unit increase	Illumina [> 1000000] (imputed)	N
1218	chr7	83009941	83009942	rs10273103	28031287	Sasayama D	2016-11-26	Hum Mol Genet	Genome-wide quantitative trait loci mapping of the human cerebrospinal fluid proteome.	Cerebrospinal fluid biomarker levels	133 Japanese ancestry individuals.	NA	7q21.11	NR	rs10273103-?	NR	1E-20	(Semaphorin-3E)			Illumina [514227]	N
1218	chr7	83017673	83017678	rs146693166	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	7q21.11	NR	rs146693166-T	0.108	4E-222	(Semaphorin-3E, SEMA3E.5363.51.3)	1.16	[1.08-1.24] unit decrease	Affymetrix [10572788] (imputed)	N
1218	chr7	83034361	83034362	rs3757607	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	7q21.11	SEMA3E	rs3757607-C	0.122	5E-264	(Semaphorin-3E, SEMA3E.5363.51.3)	1.12	[1.06-1.18] unit decrease	Affymetrix [10572788] (imputed)	N
1218	chr7	83049438	83049439	rs12668853	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SEMA3E	5,341 Icelandic ancestry individuals	NA	7q21.11		rs12668853-A	0.1485	2E-82		0.462127	[0.42-0.51] unit increase	Illumina [7506463] (imputed)	N
1218	chr7	83049438	83049439	rs12668853	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	7q21.11	SEMA3E	rs12668853-G	0.849375	2E-50	(SEMA3E, 10670_26_3)	0.50531054	[0.44-0.57] unit decrease	Illumina [> 1000000] (imputed)	N
1218	chr7	83052868	83052869	rs62460802	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater scored)	1791 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	7q21.11	NR	rs62460802-?	NR	9E-6	(Hispanic)	0.05113	[0.029-0.074] unit decrease	Illumina [at least 7383741] (imputed)	N
1218	chr7	83086362	83086365	rs960850955	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Retinitis pigmentosa	155 East Asian ancestry cases, 168,903 East Asian ancestry controls	NA	7q21.11		rs960850955-T	6.45248E-4	2E-8		31.282894	[20.34-42.22] unit increase	Illumina [13428559] (imputed)	N
1218	chr7	83086362	83086365	rs960850955	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Retinitis pigmentosa	121 European ancestry cases, 126,333 European ancestry controls, 155 East Asian ancestry cases, 168,903 East Asian ancestry controls	NA	7q21.11		rs960850955-T	NR	2E-8		31.2829	[20.34-42.22] unit increase	Illumina [23539365] (imputed)	N
1219	chr7	83111836	83111837	rs7458708	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	7q21.11	NR	rs7458708-?	NR	1E-7				Illumina [at least 7383741] (imputed)	N
1219	chr7	83118874	83118875	rs9640942	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 42)	19,670 European ancestry individuals	NA	7q21.11		rs9640942-?	NR	3E-8				NR [9705931] (imputed)	N
1219	chr7	83156507	83156508	rs76440131	34684344	Zhang Z	2021-09-24	Nutrients	Vitamin D and the Risks of Depression and Anxiety: An Observational Analysis and Genome-Wide Environment Interaction Study.	Anxiety score x vitamin D PRS interaction (COJO adjusted)	120,590 European ancestry individuals	NA	7q21.11		rs76440131-?	NR	3E-10		2.64	[1.82-3.46] unit decrease	Affymetrix [NR] (imputed)	N
1219	chr7	83156507	83156508	rs76440131	34684344	Zhang Z	2021-09-24	Nutrients	Vitamin D and the Risks of Depression and Anxiety: An Observational Analysis and Genome-Wide Environment Interaction Study.	Anxiety score x vitamin D PRS interaction	120,590 European ancestry individuals	NA	7q21.11		rs76440131-?	NR	2E-8		2.16	[1.42-2.9] unit decrease	Affymetrix [NR] (imputed)	N
1219	chr7	83157803	83157804	rs17446324	27142222	White MJ	2016-05-03	Immunogenetics	Novel genetic risk factors for asthma in African American children: Precision Medicine and the SAGE II Study.	Asthma (childhood onset)	812 African American child cases, 415 African American child controls	NA	7q21.11	SEMA3E	rs17446324-A	0.95	5E-6		2.4390244	[1.67-3.57]	Affymetrix [797128]	N
1219	chr7	83228792	83228793	rs10246409	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Lateral ventricle temporal horn volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	7q21.11	SEMA3E	rs10246409-?		7E-6				Illumina [4322238] (imputed)	N
1220	chr7	83249239	83249240	rs42016	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	7q21.11	NR	rs42016-T	0.552	7E-60	(Semaphorin-3E, SEMA3E.5363.51.3)	0.39	[0.35-0.43] unit increase	Affymetrix [10572788] (imputed)	N
1220	chr7	83255556	83255557	rs56957961	31598132	Donati G	2019-06-30	Mind Brain Educ	Genome-Wide Association Study of Latent Cognitive Measures in Adolescence: Genetic Overlap With Intelligence and Education.	Cognitive performance (processing speed)	4,611 European ancestry adolescents	NA	7q21.11	SEMA3E	rs56957961-?	NR	3E-6		0.205	[0.13-0.28] unit increase	Illumina [6319684] (imputed)	N
1220	chr7	83267982	83267983	rs536299	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	7q21.11	SEMA3E	rs536299-A	0.3326633	2E-26	(Semaphorin-3E)	0.4734	[0.39-0.56] unit increase	Affymetrix [509946]	N
1220	chr7	83273774	83273775	rs302121	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	7q21.11	NR	rs302121-?	NR	2E-7				Affymetrix [NR]	N
1220	chr7	83274677	83274678	rs74699460	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	7q21.11	NR	rs74699460-?	NR	3E-6		0.575225	[0.33-0.82] unit increase	NR [13958389] (imputed)	N
1220	chr7	83278892	83278893	rs109467	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SEMA3E	5,341 Icelandic ancestry individuals	NA	7q21.11		rs109467-C	0.3948	1E-20		0.167343	[0.13-0.2] unit increase	Illumina [7506463] (imputed)	N
1220	chr7	83278892	83278893	rs109467	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	7q21.11	NR	rs109467-T	0.62	2E-99	(Semaphorin-3E, SEMA3E.5363.51.3)	0.51	[0.47-0.55] unit decrease	Affymetrix [10572788] (imputed)	N
1220	chr7	83283968	83283969	rs188547	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SEMA3E	5,362 Icelandic ancestry individuals	NA	7q21.11		rs188547-G	0.3975	1E-61		0.307158	[0.27-0.34] unit increase	Illumina [7506463] (imputed)	N
1220	chr7	83297261	83297262	rs6976769	25134534	Chen K	2014-08-19	Nat Commun	Genome-wide association study identifies new susceptibility loci for epithelial ovarian cancer in Han Chinese women.	Epithelial ovarian cancer	1,044 Han Chinese ancestry cases, 1,172 Han Chinese ancestry controls	1,452 Han Chinese ancestry cases, 2,803 Han Chinese ancestry controls	7q21.11	SEMA3E, ABCB4	rs6976769-C	.05	4E-6		1.458	[1.056-2.012]	Illumina [710714]	N
1220	chr7	83306488	83306489	rs571356	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	7q21.11	SEMA3E	rs571356-G	0.683726	6E-17		0.0164224	[0.013-0.02] unit increase	NR [13737936] (imputed)	N
1220	chr7	83306488	83306489	rs571356	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	7q21.11		rs571356-?	NR	2E-12				NR [~ 8900000] (imputed)	N
1220	chr7	83306488	83306489	rs571356	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	7q21.11		rs571356-?	NR	1E-13		0.016134	[0.012-0.02] unit increase	Affymetrix [20259828] (imputed)	N
1220	chr7	83307599	83307600	rs540157	34437536	Akhtari FS	2021-08-26	PLoS Genet	High-throughput screening and genome-wide analyses of 44 anticancer drugs in the 1000 Genomes cell lines reveals an association of the NQO1 gene with the response of multiple anticancer drugs.	Response to cladaribine	680 lymphoblastoid cell lines from Han Chinese ancestry, Japanese ancestry, Kenyan ancestry, Mexican ancestry, Tuscan ancestry, Yoruban ancestry, British ancestry, Columbian ancestry individuals	NA	7q21.11		rs540157-?	NR	3E-7				Illumina [1510701]	N
1220	chr7	83312958	83312959	rs302101	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	7q21.11		rs302101-?	NR	4E-13		0.0159892	[0.012-0.02] unit increase	Affymetrix [20259828] (imputed)	N
1220	chr7	83312958	83312959	rs302101	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	7q21.11	SEMA3E	rs302101-G	0.683025	5E-10		0.0217004	[0.015-0.029] unit increase	NR [17166351] (imputed)	N
1220	chr7	83312958	83312959	rs302101	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	7q21.11	SEMA3E	rs302101-G	0.682382	3E-7	(women)	0.0247223	[0.015-0.034] unit increase	NR [17166351] (imputed)	N
1221	chr7	83432408	83432409	rs6967981	32693751	Keene KL	2020-07-22	Stroke	Genome-Wide Association Study Meta-Analysis of Stroke in 22 000 Individuals of African Descent Identifies Novel Associations With Stroke.	Stroke	3,734 African ancestry cases, 18,317 African ancestry controls	NA	7q21.11	SEMA3A	rs6967981-T	NR	8E-7		1.16	[1.12-1.19]	Affymetrix, Illumina [~ 16900000] (imputed)	N
1222	chr7	83493519	83493520	rs797645	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	7q21.11	SEMA3E	rs797645-?	NR	7E-6	(tauro deoxycholate)	0.21368328	[0.12-0.31] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1222	chr7	83500281	83500282	rs185170954	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		7q21.11	Intergenic	rs185170954-A	0.997	9E-6	(liability model)	0.82	[0.47-1.17] unit decrease	NR [19725427] (imputed)	N
1222	chr7	83505391	83505392	rs11981075	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	6-month creatinine clearance change response to tenofovir treatment in HIV infection (treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	7q21.11	NR	rs11981075-?		7E-6	(Hispanic)			Illumina [~ 5140000] (imputed)	N
1222	chr7	83515094	83515095	rs12666591	29921221	Cha S	2018-06-19	BMC Genomics	Identification of five novel genetic loci related to facial morphology by genome-wide association studies.	Nose morphology	5,643 Korean ancestry individuals	up to 1,940 Korean ancestry individuals	7q21.11	SEMA3E, SEMA3A	rs12666591-C	0.08	8E-6	(Nasolabial angle)	0.017	[NR] unit increase	Affymetrix [311944]	N
1222	chr7	83575333	83575334	rs701317	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical thickness (MOSTest)	26,502 European ancestry individuals	NA	7q21.11	NR	rs701317-?		3E-8				NR [7428630] (imputed)	N
1222	chr7	83609038	83609039	rs797820	21784300	Mick E	2011-07-13	J Am Acad Child Adolesc Psychiatry	Genome-wide association study of the child behavior checklist dysregulation profile.	Attention deficit hyperactivity disorder	341 ADHD case offspring from 339 trios	NA	7q21.11	SEMA3A	rs797820-?	NR	8E-6				Illumina [835136]	N
1222	chr7	83621985	83621986	rs7808766	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	7q21.11	NR	rs7808766-T	0.2165	1E-17				NR [9056863] (imputed)	N
1222	chr7	83621985	83621986	rs7808766	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	7q21.11	SEMA3A	rs7808766-?		1E-11				NR [7428630] (imputed)	N
1223	chr7	83637596	83637597	rs139438618	29071344	Zhou H	2017-10-25	JAMA Psychiatry	Genetic Risk Variants Associated With Comorbid Alcohol Dependence and Major Depression.	Major depression and alcohol dependence	3,041 African American individuals, 1,618 European ancestry individuals	1,612 African American individuals, 1,551 European ancestry individuals	7q21.11	SEMA3A	rs139438618-G	NR	2E-11	(AA)	0.869	unit increase	Illumina [at least 5086170] (imputed)	N
1223	chr7	83639686	83639687	rs10499878	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	7q21.11	SEMA3A	rs10499878-A	0.822659	4E-15		0.0187487	[0.014-0.023] unit decrease	NR [13737936] (imputed)	N
1223	chr7	83656799	83656800	rs10235789	21835309	Larsson M	2011-08-12	Am J Hum Genet	GWAS findings for human iris patterns: associations with variants in genes that influence normal neuronal pattern development.	Iris characteristics	2,121 European ancestry individuals	499 European ancestry adolescent twins and siblings, 73 European ancestry adult individuals	7q21.11	SEMA3A	rs10235789-C		7E-11	(Crypts)	0.12	[0.08-0.16] unit increase	Illumina [274604] (imputed)	N
1223	chr7	83656799	83656800	rs10235789	21835309	Larsson M	2011-08-12	Am J Hum Genet	GWAS findings for human iris patterns: associations with variants in genes that influence normal neuronal pattern development.	Iris characteristics	2,121 European ancestry individuals	499 European ancestry adolescent twins and siblings, 73 European ancestry adult individuals	7q21.11	SEMA3A	rs10235789-C		3E-6	(Furrows)	0.09	[0.05-0.13] unit decrease	Illumina [274604] (imputed)	N
1223	chr7	83669600	83669601	rs4732536	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	7q21.11	NR	rs4732536-?		4E-9	(Inferior fronto-occipital fasciculus)			NR [8955960] (imputed)	N
1223	chr7	83682203	83682204	rs146024367	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	7q21.11	NR	rs146024367-?		3E-11	(Inferior fronto-occipital fasciculus)			NR [8955960] (imputed)	N
1223	chr7	83691791	83691792	rs2527042	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	7q21.11		rs2527042-?	NR	7E-16				NR [~ 8900000] (imputed)	N
1223	chr7	83697482	83697483	rs12707607	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	7q21.11	NR	rs12707607-?	NR	2E-8	(left isthmus cingulate)			NR [9227495] (imputed)	N
1223	chr7	83697482	83697483	rs12707607	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	7q21.11	NR	rs12707607-?		7E-9	(Inferior fronto-occipital fasciculus)			NR [8955960] (imputed)	N
1223	chr7	83699255	83699256	rs556621759	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	7q21.11	SEMA3A	rs556621759-T	0.9986	3E-7		1.913	[1.18-2.64] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1223	chr7	83699255	83699256	rs556621759	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	7q21.11	SEMA3A	rs556621759-T	0.9986	3E-7		1.913	[1.18-2.64] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1224	chr7	83756417	83756418	rs3029	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	7q21.11		rs3029-C	0.42	4E-36		12.54	z score increase	Affymetrix [9061022] (imputed)	N
1224	chr7	83772414	83772415	rs447	23453885	Smoller JW	2013-02-27	Lancet	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NA	7q21.11	SEMA3A	rs447-C	NR	4E-6	(5 degree of freedom test)	1.025	[1.00-1.05]	NR [1252901] (imputed)	N
1224	chr7	83774498	83774499	rs7781126	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	7q21.11	LARS2, LIMD1, SACM1L, SLC6A20	rs7781126-?		2E-9				NR [7428630] (imputed)	N
1224	chr7	83778443	83778444	rs10488271	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 15)	19,670 European ancestry individuals	NA	7q21.11		rs10488271-?	NR	9E-18				NR [9705931] (imputed)	N
1224	chr7	83782838	83782839	rs17158675	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	7q21.11	SEMA3A	rs17158675-A	0.057	9E-6	(Urinary free epinephrine )	0.03	[NR] nmol/d increase	Illumina [899892]	N
1224	chr7	83836043	83836044	rs11982456	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 58)	19,670 European ancestry individuals	NA	7q21.11		rs11982456-?	NR	2E-8				NR [9705931] (imputed)	N
1224	chr7	83837733	83837734	rs1962779	33723576	Carrera C	2021-03-16	Brain	Single nucleotide variations in ZBTB46 are associated with post-thrombolytic parenchymal haematoma.	Parenchymal hematoma in thrombolytic-treated acute ischaemic stroke	71 European ancestry cases, 1,253 European ancestry controls	70 European ancestry cases, 510 European ancestry controls	7q21.11		rs1962779-C	0.19	8E-8		2.43	[1.76-3.37]	Illumina [7989272] (imputed)	N
1225	chr7	83904501	83904502	rs79714767	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	7q21.11	NR	rs79714767-?	NR	2E-8				Illumina [7760689] (imputed)	N
1225	chr7	83911270	83911271	rs488333	22210626	Mead S	2011-12-30	Hum Mol Genet	Genome-wide association study in multiple human prion diseases suggests genetic risk factors additional to PRNP.	Prion diseases	1,281 European ancestry cases, 6,015 European ancestry controls, 290 Papua New Guinean ancestry cases, 286 Papua New Guinean ancestry controls	NA	7q21.11	SEMA3A	rs488333-?	NR	3E-6		1.2681	[NR]	Illumina [NR] (imputed)	N
1225	chr7	83998675	83998676	rs62472627	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	7q21.11	SEMA3A	rs62472627-C	0.14	7E-11		0.61	[0.43-0.79] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1225	chr7	83998675	83998676	rs62472627	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	7q21.11	SEMA3A	rs62472627-C	0.1448	5E-10		0.5902	[0.4-0.78] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1227	chr7	84150813	84150814	rs144137329	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	7q21.11	SEMA3A	rs144137329-?		7E-11				Affymetrix, Illumina [NR] (imputed)	N
1227	chr7	84153010	84153011	rs1228977	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	7q21.11		rs1228977-T	0.35	5E-17		8.38	z score increase	Affymetrix [9061022] (imputed)	N
1227	chr7	84158587	84158588	rs1014498	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	7q21.11	NR	rs1014498-?	NR	9E-10	(cerebellar vermal lobules I V)			NR [9227495] (imputed)	N
1227	chr7	84197310	84197311	rs62472985	29379196	Fadista J	2018-01-29	Eur J Hum Genet	Genome-wide association study of Hirschsprung disease detects a novel low-frequency variant at the RET locus.	Hirschsprung disease	170 Danish ancestry cases, 4717 Danish ancestry controls	416 European ancestry cases, 903 European ancestry controls	7q21.11	SEMA3	rs62472985-G	0.16	3E-11		1.74	[NR]	Illumina [6162479] (imputed)	N
1227	chr7	84207572	84207573	rs76810346	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7q21.11	NR	rs76810346-C	0.01045	8E-9	(BPNT1)	0.04388	NR unit increase	Illumina [1671387] (imputed)	N
1227	chr7	84251378	84251379	rs4132667	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	7q21.11		rs4132667-A	0.42	2E-17		8.47	z score increase	Affymetrix [9061022] (imputed)	N
1227	chr7	84262580	84262581	rs7800191	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	7q21.11	NR	rs7800191-?	NR	1E-8	(cerebellar vermal lobules I V)			NR [9227495] (imputed)	N
1228	chr7	84296810	84296811	rs7807002	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 61)	4,680 European ancestry individuals	3,566 European ancestry individuals	7q21.11		rs7807002-A	0.421069798	3E-10				Illumina [7417619] (imputed)	N
1228	chr7	84321636	84321637	rs117943988	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial lung cancer	1,993 European ancestry cases, 33,960 European ancestry controls	NA	7q21.11	NR	rs117943988-G	0.025	9E-6		1.68	[1.33-2.11]	Illumina [9327222] (imputed)	N
1228	chr7	84322188	84322189	rs117617821	29379196	Fadista J	2018-01-29	Eur J Hum Genet	Genome-wide association study of Hirschsprung disease detects a novel low-frequency variant at the RET locus.	Hirschsprung disease	170 Danish ancestry cases, 4717 Danish ancestry controls	416 European ancestry cases, 903 European ancestry controls	7q21.11	SEMA3	rs117617821-C	0.04	7E-16		2.71	[NR]	Illumina [6162479] (imputed)	N
1228	chr7	84349841	84349842	rs80227144	27702942	Tang CS	2016-10-03	Hum Mol Genet	Trans-ethnic meta-analysis of genome-wide association studies for Hirschsprung disease.	Hirschsprung disease	212 European ancestry cases, 173 Chinese ancestry cases, 122 Korean ancestry cases, 202 European ancestry controls, 615 Chinese ancestry controls, 374 Korean ancestry controls	NA	7q21.11	SEMA3C/3D	rs80227144-A	0.03	5E-10	(European)	5.2	[3.09-8.73]	Affymetrix, Illumina [at least 6512116] (imputed)	N
1228	chr7	84395442	84395443	rs12707676	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	7q21.11		rs12707676-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1228	chr7	84408638	84408638	rs34106131	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 45)	19,670 European ancestry individuals	NA	7q21.11		rs34106131-?	NR	3E-10				NR [9705931] (imputed)	N
1229	chr7	84536168	84536169	rs810667	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7q21.11		rs810667-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1230	chr7	84560283	84560284	rs200385090	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	7q21.11	NR	rs200385090-?	NR	4E-6		10667.331	NR unit decrease	Illumina [2379855]	N
1230	chr7	84569509	84569510	rs12707691	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	7q21.11	SEMA3D	rs12707691-C	0.6642	3E-13		0.0194	[0.014-0.025] unit decrease	Affymetrix [19819130] (imputed)	N
1230	chr7	84569509	84569510	rs12707691	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	7q21.11	SEMA3D	rs12707691-C	0.6642	2E-11		0.0168	[0.012-0.022] unit decrease	Affymetrix [19819130] (imputed)	N
1230	chr7	84569509	84569510	rs12707691	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	7q21.11	SEMA3D	rs12707691-C	0.6642	2E-16		0.0205	[0.016-0.025] unit decrease	Affymetrix [19819130] (imputed)	N
1230	chr7	84577410	84577411	rs13234914	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	7q21.11	NR	rs13234914-A	0.6587	1E-11		0.0128	[0.0091-0.0165] unit decrease	NR [~ 27400000] (imputed)	N
1230	chr7	84578001	84578002	rs10256889	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	7q21.11		rs10256889-A	NR	1E-8		0.0099	[0.0066-0.0132] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1230	chr7	84600097	84600098	rs140221313	32277301	Okuda H	2020-04-10	Clin Exp Nephrol	Genome-wide association study identifies new loci for albuminuria in the Japanese population.	Urinary albumin excretion	7,805 Japanese ancestry individuals	NA	7q21.11	SEMA3D	rs140221313-A	0.038	2E-8		31.17	[20.32-42.02] unit increase	Illumina [4962728] (imputed)	N
1230	chr7	84621548	84621549	rs7783234	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	7q21.11	SEMA3D	rs7783234-G	NR	6E-9		0.0175643	[0.012-0.023] unit increase	Affymetrix [319769] (imputed)	N
1230	chr7	84628988	84628989	rs7800072	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	7q21.11	SEMA3D	rs7800072-G	NR	3E-9		0.0176672	[0.012-0.024] unit increase	Affymetrix [319769] (imputed)	N
1230	chr7	84628988	84628989	rs7800072	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	7q21.11	NR	rs7800072-?	NR	3E-12				Affymetrix [~ 8270000] (imputed)	N
1230	chr7	84628988	84628989	rs7800072	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	7q21.11		rs7800072-?	NR	5E-12				NR [~ 8900000] (imputed)	N
1230	chr7	84628988	84628989	rs7800072	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	7q21.11	NR	rs7800072-G	0.34	1E-13		0.014	[0.01-0.018] unit increase	Affymetrix [2446094] (imputed)	N
1230	chr7	84628988	84628989	rs7800072	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	7q21.11	NR	rs7800072-G	0.34	5E-8				Affymetrix [2446094] (imputed)	N
1230	chr7	84663231	84663232	rs11771699	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	7q21.11		rs11771699-?	NR	2E-16				NR [~ 8900000] (imputed)	N
1231	chr7	84674996	84674997	rs10486847	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	7q21.11	NR	rs10486847-A	0.288451	1E-11		0.014219	[0.01-0.018] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1231	chr7	84687450	84687451	rs12707698	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	7q21.11	NR	rs12707698-C	0.4513	1E-17				NR [9056863] (imputed)	N
1231	chr7	84778391	84778392	rs2372671	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q21.11	NR	rs2372671-A	0.654818	1E-10				Affymetrix, Illumina [24332387] (imputed)	N
1231	chr7	84778391	84778392	rs2372671	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	7q21.11	NR	rs2372671-A	0.589564	2E-12		0.013229	[0.0095-0.0169] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
1231	chr7	84778391	84778392	rs2372671	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	7q21.11	NR	rs2372671-A	0.589395	9E-11		0.012196	[0.0085-0.0159] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
1231	chr7	84784019	84784020	rs1019204	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	7q21.11	NR	rs1019204-T	0.60572	8E-12		0.01291	[0.0092-0.0166] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
1231	chr7	84784052	84784053	rs1019203	32390946	Liu L	2020-04-22	Front Endocrinol (Lausanne)	Twelve New Genomic Loci Associated With Bone Mineral Density.	Total body bone mineral density (MTAG)	66,628 individuals	NA	7q21.11	NR	rs1019203-C	0.64	3E-8		0.02	[0.012-0.028] unit increase	Affymetrix, Illumina [7369691] (imputed)	N
1231	chr7	84784052	84784053	rs1019203	32390946	Liu L	2020-04-22	Front Endocrinol (Lausanne)	Twelve New Genomic Loci Associated With Bone Mineral Density.	Heel bone mineral density (MTAG)	426,824 individuals	NA	7q21.11	NR	rs1019203-C	0.64	9E-8		0.01	[0.0041-0.0159] unit increase	NR [7369691] (imputed)	N
1231	chr7	84786953	84786954	rs13225158	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	7q21.11	SEMA3D	rs13225158-G	0.647901	3E-9		0.0113758	[0.0076-0.0151] unit increase	NR [13737936] (imputed)	N
1231	chr7	84788372	84788373	rs34319950	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	7q21.11	SEMA3D	rs34319950-A	0.2333	4E-6		0.0378	[0.022-0.054] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1231	chr7	84794526	84794529	rs71864257	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	7q21.11	SEMA3D	rs71864257-T	0.594421	3E-9		0.0133989	[0.009-0.0178] unit increase	Affymetrix [93095623] (imputed)	N
1231	chr7	84800479	84800480	rs4727099	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	7q21.11		rs4727099-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1231	chr7	84802049	84802050	rs7780423	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q21.11	NR	rs7780423-T	0.676587	1E-10				Affymetrix, Illumina [24653286] (imputed)	N
1232	chr7	84851184	84851185	rs2732730	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7q21.11		rs2732730-?	NR	7E-15				NR [~ 8900000] (imputed)	N
1232	chr7	84876067	84876068	rs715223	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	7q21.11		rs715223-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1233	chr7	84952630	84952631	rs12534830	27028160	Sherva R	2016-03-30	JAMA Psychiatry	Genome-wide Association Study of Cannabis Dependence Severity, Novel Risk Variants, and Shared Genetic Risks.	Cannabis dependence symptom count	Up to 6,000 African American ancestry individuals, 8,754 European ancestry individuals	At least 1,893 European ancestry individuals	7q21.11	Intergenic	rs12534830-A	0.66	1E-6				Illumina [NR] (imputed)	N
1233	chr7	84977965	84977966	rs62460873	31164008	Mullins N	2019-06-05	Am J Psychiatry	GWAS of Suicide Attempt in Psychiatric Disorders and Association With Major Depression Polygenic Risk Scores.	Suicide attempts in major depressive disorder	1,622 European ancestry attempters, 8,786 European ancestry nonattempters	NA	7q21.11	NR	rs62460873-C	0.010000000000000009	5E-7		2.7027025	[1.85-4]	NR [8482392] (imputed)	N
1233	chr7	84992824	84992825	rs10236649	32701715	Zhang Y	2020-07-21	J Bone Joint Surg Am	PPARGC1B Is Associated with Nontraumatic Osteonecrosis of the Femoral Head: A Genomewide Association Study on a Chart-Reviewed Cohort.	Nontraumatic osteonecrosis of the femoral head	118 European ancestry cases, 56,811 European ancestry controls	NA	7q21.11	intergenic	rs10236649-C	0.359	5E-6		1.82	[1.41-2.36]	Illumina [3905175] (imputed)	N
1233	chr7	85016887	85016888	rs78265345	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	7q21.11	intergenic	rs78265345-C	0.0100022079450851	9E-7	(G_Dorea_RNT)	0.578684	[0.35-0.81] unit increase	Illumina [7711310] (imputed)	N
1233	chr7	85034226	85034227	rs1583081	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta maximum area	31,908 individuals	NA	7q21.11		rs1583081-G	0.577339	6E-24		0.0749285	[0.06-0.09] decrease	Affymetrix [NR]	N
1233	chr7	85045118	85045118	rs771025673	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta minimum area	35,110 individuals	NA	7q21.11		rs771025673-AT	0.597537	2E-22		0.0709121	[0.057-0.085] decrease	Affymetrix [NR]	N
1233	chr7	85048379	85048380	rs142857449	25839716	Ng E	2015-04-02	Environ Res	Genome-wide association study of plasma levels of polychlorinated biphenyls disclose an association with the CYP2B6 gene in a population-based sample.	Polychlorinated biphenyl levels	922 European ancestry individuals	NA	7q21.11	NR	rs142857449-?		5E-7	(PCB189)	0.94	[0.57-1.31] unit increase	Illumina [8736858] (imputed)	N
1234	chr7	85085332	85085333	rs7779253	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	7q21.11		rs7779253-?	NR	2E-12				NR [~ 8900000] (imputed)	N
1234	chr7	85092809	85092810	rs79292568	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	7q21.11	NR	rs79292568-A	0.0662206	3E-19		0.0553032	[0.043-0.067] unit decrease	NR [19129689] (imputed)	N
1234	chr7	85151913	85151914	rs80287706	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	7q21.11	NR	rs80287706-?	NR	4E-6		10667.331	NR unit decrease	Illumina [2379855]	N
1234	chr7	85183167	85183168	rs11525841	26545240	Giri A	2015-11-06	PLoS One	Genetic Determinants of Pelvic Organ Prolapse among African American and Hispanic Women in the Women's Health Initiative.	Pelvic organ prolapse (moderate/severe)	154 African American cases, 948 African American controls, 163 Hispanic cases, 305 Hispanic controls	NA	7q21.11	LOC729630	rs11525841-A	0.12	8E-6		1.81		Affymetrix [at least 730985] (imputed)	N
1235	chr7	85199159	85199160	rs73189269	34337005	Duan H	2021-07-17	Biomed Res Int	A Genome-Wide Association Study of Age-Related Hearing Impairment in Middle- and Old-Aged Chinese Twins.	Hearing function (2 kHz)	131 Chinese ancestry dizygotic twin pairs	NA	7q21.11		rs73189269-?	NR	1E-6				Illumina [1365315]	N
1236	chr7	85346176	85346177	rs12690897	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1a levels	3,522 Finnish ancestry individuals	NA	7q21.11	NR	rs12690897-G	NR	2E-6		0.1248	[0.073-0.176] SD units decrease	NR [10700000] (imputed)	N
1236	chr7	85356746	85356747	rs6944685	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (90 or 130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	7q21.11	intergenic	rs6944685-?	NR	9E-6		0.161	[0.055-0.267] unit increase	Illumina [at least 13000000] (imputed)	N
1236	chr7	85454375	85454376	rs577870183	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	7q21.11		rs577870183-?	NR	4E-9				Affymetrix [NR] (imputed)	N
1237	chr7	85463716	85463717	rs2662865	33692975	Buda P	2021-02-22	Front Pediatr	Association Between rs12037447, rs146732504, rs151078858, rs55723436, and rs6094136 Polymorphisms and Kawasaki Disease in the Population of Polish Children.	Kawasaki disease	119 European ancestry cases, 6,071 European ancestry controls	NA	7q21.11		rs2662865-G	0.02245	7E-7		3.38	2.031-5.625	Illumina [164395]	N
1237	chr7	85479441	85479442	rs17160230	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	7q21.11	NR	rs17160230-?	NR	1E-7		0.895847	[0.56-1.23] unit increase	NR [13958389] (imputed)	N
1237	chr7	85566475	85566476	rs17312438	25187353	Goldstein JI	2014-09-04	Nat Commun	Clozapine-induced agranulocytosis is associated with rare HLA-DQB1 and HLA-B alleles.	Clozapine-induced agranulocytosis	161 European ancestry cases, 1,196 European ancestry clozapine-treated and untreated controls	NA	7q21.11	intergenic	rs17312438-C	0.0116	9E-6		8.37	[7.43-9.31]	Illumina [8809853] (imputed)	N
1237	chr7	85574336	85574337	rs142186109	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	7q21.11	intergenic	rs142186109-T	NR	9E-6	(AA)			Illumina [up to 11995908] (imputed)	N
1237	chr7	85574336	85574337	rs142186109	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	7q21.11	intergenic	rs142186109-T	NR	9E-6				Illumina [up to 11995908] (imputed)	N
1238	chr7	85643640	85643641	rs1254048598	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7q21.11	NR	rs1254048598-TA	0.01045	6E-9	(MAP4)	0.02456	NR unit increase	Illumina [1671387] (imputed)	N
1238	chr7	85672108	85672109	rs17160578	32235003	Arbeev KG	2020-04-01	Aging (Albany NY)	Genetics of physiological dysregulation: findings from the long life family study using joint models.	Hand grip strength (Mahalanobis distance)	4,608 European ancestry individuals	NA	7q21.11	GRM3	rs17160578-?	NR	6E-7				Illumina [1464300]	N
1238	chr7	85676204	85676205	rs117905923	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7q21.11	NR	rs117905923-C	0.01045	6E-9	(MAP4)	0.02456	NR unit increase	Illumina [1671387] (imputed)	N
1238	chr7	85688214	85688215	rs151062494	32472697	Verma SS	2020-05-30	Clin Pharmacol Ther	Genome-wide association study of platelet reactivity and cardiovascular response in patients treated with clopidogrel: a study by the International Clopidogrel Pharmacogenomics Consortium (ICPC).	Cardiovascular death or myocardial infarction in response to clopidogrel treatment	102 European ancestry cases, 2,068 European ancestry controls	NA	7q21.11	intergenic	rs151062494-C	0.992037	4E-7		10.044749	NR	Illumina [5009928] (imputed)	N
1239	chr7	85822861	85822862	rs112858730	32472697	Verma SS	2020-05-30	Clin Pharmacol Ther	Genome-wide association study of platelet reactivity and cardiovascular response in patients treated with clopidogrel: a study by the International Clopidogrel Pharmacogenomics Consortium (ICPC).	Cardiovascular death or myocardial infarction in response to clopidogrel treatment	102 European ancestry cases, 2,068 European ancestry controls	NA	7q21.11	intergenic	rs112858730-T	0.99373	2E-6		10.931953	NR	Illumina [5009928] (imputed)	N
1239	chr7	85830271	85830272	rs2373124	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	7q21.11		rs2373124-A	0.7604	4E-9		0.0096	[0.0065-0.0127] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1240	chr7	85939151	85939155	rs1191604074	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7q21.11	NR	rs1191604074-G	0.01045	6E-9	(MAP4)	0.02456	NR unit increase	Illumina [1671387] (imputed)	N
1240	chr7	85945108	85945112	rs200426991	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-4 levels	8,124 Finnish ancestry individuals	NA	7q21.11	NR	rs200426991-GACCT		1E-6		0.0835	[0.05-0.117] SD units increase	NR [10700000] (imputed)	N
1240	chr7	85967145	85967146	rs10231286	32235003	Arbeev KG	2020-04-01	Aging (Albany NY)	Genetics of physiological dysregulation: findings from the long life family study using joint models.	Hand grip strength (Mahalanobis distance)	4,608 European ancestry individuals	NA	7q21.11	GRM3	rs10231286-?	NR	5E-8				Illumina [1464300]	N
1240	chr7	85977971	85977972	rs11978015	34456681	Song M	2021-08-12	Front Neurosci	Genome-Wide Meta-Analysis Identifies Two Novel Risk Loci for Epilepsy.	Epilepsy	19,122 European ancestry cases, 168,998 European ancestry controls, 2,143 Japanese ancestry cases, 210,310 Japanese ancestry controls, 5,087 cases, 395,209 controls	NA	7q21.11		rs11978015-G	NR	9E-9		1.058		NR [NR]	N
1241	chr7	86058386	86058387	rs10155879	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-4 levels	8,124 Finnish ancestry individuals	NA	7q21.11	NR	rs10155879-G		6E-6		0.0756	[0.043-0.108] SD units increase	NR [10700000] (imputed)	N
1241	chr7	86103401	86103402	rs1358684	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	7q21.11	SEMA3D, GRM3	rs1358684-T	0.7086	4E-8		5.512	[NR] z score increase	Affymetrix, Illumina [~ 11000000] (imputed)	N
1241	chr7	86103732	86103733	rs7800245	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	7q21.11	GRM3	rs7800245-?		2E-16				Affymetrix, Illumina [NR] (imputed)	N
1242	chr7	86124482	86124483	rs10255211	32235003	Arbeev KG	2020-04-01	Aging (Albany NY)	Genetics of physiological dysregulation: findings from the long life family study using joint models.	Hand grip strength (Mahalanobis distance)	4,608 European ancestry individuals	NA	7q21.11	GRM3	rs10255211-?	NR	3E-6				Illumina [1464300]	N
1242	chr7	86178623	86178624	rs559280987	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	7q21.11	NR	rs559280987-?	NR	1E-5		0.91323	[0.51-1.32] unit increase	NR [13958389] (imputed)	N
1242	chr7	86227510	86227511	rs12669009	27611488	Almoguera B	2016-09-09	Am J Respir Crit Care Med	Identification of Four Novel Loci in Asthma in European American and African American Populations.	Asthma	819 African American non-allergic asthma cases, 2,218 African American allergic asthma cases 4,360 African American controls, 808 European American non-allergic asthma cases, 1,464 European American allergic asthma cases, 11,975 European American controls	NA	7q21.11	GRM3	rs12669009-?		2E-6	(AA)	0.242	[0.03-0.454] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1242	chr7	86237580	86237581	rs1405876	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	7q21.11	Intergenic	rs1405876-T	0.6491	4E-20	(MTAG)	0.0159	[0.013-0.019] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1242	chr7	86237580	86237581	rs1405876	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	7q21.11		rs1405876-T	0.6403	8E-14		0.0109	[0.008-0.0138] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1242	chr7	86237580	86237581	rs1405876	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	7q21.11	Intergenic	rs1405876-T	0.6403	5E-17	(MTAG)	0.0114	[0.0087-0.0141] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1242	chr7	86239030	86239031	rs58882293	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	7q21.11	Intergenic	rs58882293-A	0.6493	2E-9		0.0142	[0.0095-0.0189] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1243	chr7	86246315	86246316	rs35182064	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Schizophrenia (MTAG)	at least 33,640 European ancestry cases, at least 43,456 European ancestry controls	NA	7q21.11	NR	rs35182064-A	0.0457	2E-9		0.16722682	[0.11-0.22] unit decrease	NR [NR]	N
1243	chr7	86249395	86249396	rs146312	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	7q21.11	Intergenic	rs146312-T	0.3475	5E-12	(MTAG)	0.0166	[0.012-0.021] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1243	chr7	86257015	86257016	rs274640	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	7q21.11		rs274640-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1243	chr7	86258735	86258736	rs2660971	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	7q21.11	NR	rs2660971-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
1243	chr7	86258736	86258737	rs2526952	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	7q21.11		rs2526952-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1243	chr7	86269180	86269181	rs274632	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Neuroticism	274,107 British ancestry individuals	NA	7q21.11	NR	rs274632-A	0.4229	2E-9		0.01153	[0.0078-0.0153] unit decrease	NR [8968716] (imputed)	N
1243	chr7	86269180	86269181	rs274632	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	7q21.11	NR	rs274632-A	NR	2E-8		5.574	z score decrease	Affymetrix [10847151] (imputed)	N
1243	chr7	86269180	86269181	rs274632	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling worry	372,869 European ancestry individuals	NA	7q21.11	GRM3	rs274632-A	0.433318	4E-8		5.502	unit decrease	NR [10847151] (imputed)	N
1243	chr7	86294951	86294952	rs802425	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	7q21.11	GRM3	rs802425-T	0.439978	1E-8		5.68	z score decrease	NR [10847151] (imputed)	N
1243	chr7	86294951	86294952	rs802425	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	7q21.11	GRM3	rs802425-T	0.43998	2E-9		5.978	z score decrease	Illumina [18485882] (imputed)	N
1243	chr7	86322685	86322686	rs802456	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	7q21.11	Intergenic	rs802456-T	0.3557	9E-17	(MTAG)	0.0155	[0.012-0.019] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1243	chr7	86322685	86322686	rs802456	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	7q21.11	Intergenic	rs802456-T	0.3557	2E-13		0.0149	[0.011-0.019] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1243	chr7	86348998	86348999	rs2189812	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	7q21.12	NR	rs2189812-C	0.258550537841469	6E-6	(IGP11)	0.1624	[0.092-0.233] unit increase	Illumina [~ 2500000] (imputed)	N
1243	chr7	86355214	86355215	rs10952890	27490719	Bacelis J	2016-08-04	PLoS One	Literature-Informed Analysis of a Genome-Wide Association Study of Gestational Age in Norwegian Women and Children Suggests Involvement of Inflammatory Pathways.	Gestational age at birth in labor-initiated deliveries (child effect)	884 Norwegian ancestry children	NA	7q21.12	NR	rs10952890-A		7E-6				NR [525577]	N
1244	chr7	86403262	86403263	rs6943762	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Schizophrenia (MTAG)	940,613 European ancestry individuals	NA			rs6943762-?	NR	3E-8				NR [2625067]	N
1244	chr7	86420125	86420126	rs13230421	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	7q21.12	NR	rs13230421-?	NR	2E-11		1.10584	[1.08-1.14]	Affymetrix, Illumina [12447948] (imputed)	N
1244	chr7	86427625	86427626	rs12704290	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs ADHD (ordinary least squares (OLS))	40,675 schizophrenia cases, 19,099 ADHD cases	NA	7q21.12		rs12704290-?	NR	2E-10		0.0219	NR unit decrease	NR [4428082] (imputed)	N
1244	chr7	86427625	86427626	rs12704290	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Schizophrenia (MTAG)	at least 33,640 European ancestry cases, at least 43,456 European ancestry controls	NA	7q21.12	NR	rs12704290-A	0.1282	8E-11		0.10926338	[0.076-0.142] unit decrease	NR [NR]	N
1244	chr7	86427625	86427626	rs12704290	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Bipolar disorder (MTAG)	at least 20,352 European ancestry cases, at least 31,358 European ancestry controls	NA	7q21.12	NR	rs12704290-A	0.1282	3E-9		0.09916416	[0.066-0.132] unit decrease	NR [NR]	N
1244	chr7	86427625	86427626	rs12704290	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	67,764 individuals	NA	7q21.12	NR	rs12704290-?		2E-10				NR [8377093]	N
1244	chr7	86427625	86427626	rs12704290	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	65,967 individuals	NA	7q21.12	NR	rs12704290-?		6E-9				NR [8377093]	N
1244	chr7	86427625	86427626	rs12704290	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Bipolar disorder (MTAG)	65,682 individuals	NA	7q21.12	NR	rs12704290-?		1E-9				NR [520857]	N
1244	chr7	86427625	86427626	rs12704290	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	7q21.12	GRM3, KIAA1324L	rs12704290-?		3E-10				NR [6786993] (imputed)	N
1244	chr7	86427625	86427626	rs12704290	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	7q21.12	GRM3	rs12704290-?	NR	8E-9		0.01778797	[0.012-0.024] unit increase	NR [7306098]	N
1244	chr7	86427625	86427626	rs12704290	31268507	Periyasamy S	2019-07-03	JAMA Psychiatry	Association of Schizophrenia Risk With Disordered Niacin Metabolism in an Indian Genome-wide Association Study.	Schizophrenia	816 Indian ancestry cases, 900 Indian ancestry controls, 505 Indian ancestry cases and 871 Indian ancestry controls from 405 families, up to 36,989 European and unknown ancestry cases, up to 113,075 European and unknown ancestry controls	NA	7q21.12	NR	rs12704290-?	NR	2E-11				Illumina [up to 5582932] (imputed)	N
1244	chr7	86427625	86427626	rs12704290	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	7q21.12	GRM3	rs12704290-G	NR	4E-10		1.1013216	[1.07-1.13]	Illumina [6627481] (imputed)	N
1244	chr7	86427625	86427626	rs12704290	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	7q21.12	GRM3	rs12704290-G	NR	3E-10	(EA)	1.112	[1.08-1.14]	Illumina [6627481] (imputed)	N
1244	chr7	86427625	86427626	rs12704290	29483656	Pardinas AF	2018-02-26	Nat Genet	Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.	Schizophrenia	40,675 European ancestry cases, 64,643 European ancestry controls	1,651 European ancestry cases, 4,111 cases, 142,717 European ancestry controls, 11,507 controls	7q21.12	DMTF1, KIAA1324L, TMEM243, TP53TG1, GRM3	rs12704290-?	NR	4E-14		1.121	[1.09-1.15]	Illumina [8000000] (imputed)	N
1244	chr7	86427625	86427626	rs12704290	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	7q21.12	DMTF1, GRM3, KIAA1324L	rs12704290-G	NR	3E-10		1.1013216	[1.07-1.13]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1244	chr7	86427625	86427626	rs12704290	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	7q21.12	GRM3, KIAA1324L	rs12704290-?		1E-10		1.098901	[1.08-1.14]	Affymetrix, Illumina [NR]	N
1244	chr7	86427625	86427626	rs12704290	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	7q21.12	NR	rs12704290-G	NR	7E-11		1.1111112	[NR]	Illumina [7158791] (imputed)	N
1244	chr7	86427625	86427626	rs12704290	25056061	Ripke S	2014-07-22	Nature	Biological insights from 108 schizophrenia-associated genetic loci.	Schizophrenia	32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	1,513 European ancestry cases, 66,236 European ancestry controls	7q21.12	GRM3	rs12704290-G	0.877	3E-10		1.1061947	[1.07-1.14]	Affymetrix, Illumina [9005918] (imputed)	N
1244	chr7	86468253	86468254	rs17161026	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	7q21.12	Intergenic	rs17161026-A	0.011	3E-8	(MTAG)	0.0476	[0.031-0.064] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1244	chr7	86468253	86468254	rs17161026	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	7q21.12	Intergenic	rs17161026-A	0.0137	1E-8	(MTAG)	0.0565	[0.037-0.076] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1244	chr7	86474312	86474313	rs1989796	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	7q21.12	NR	rs1989796-C	0.5861	2E-6	(EA)	0.0311	[0.018-0.044] unit decrease	Illumina [~ 11800000] (imputed)	N
1244	chr7	86477893	86477894	rs6978155	29203360	Sanders MGH	2017-12-02	J Invest Dermatol	The genetics of seborrheic dermatitis: a candidate gene approach and pilot genome-wide association study.	Seborrheic dermatitis	609 European and unknown ancestry cases, 3441 European and unknown ancestry controls	NA	7q21.12	GRM3	rs6978155-?	NR	5E-7				Illumina [9008729] (imputed)	N
1244	chr7	86486310	86486311	rs12704294	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	7q21.12	NR	rs12704294-?	NR	4E-6	(AA)	6698.82	[6680.96-6716.68]	Illumina [905956]	N
1245	chr7	86570218	86570219	rs10235954	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in dyslipidemia	295 Korean ancestry cases, 20,474 Korean ancestry controls	NA	7q21.12		rs10235954-T	0.2132	6E-6		1.518	[1.267-1.818]	Affymetrix [7975321] (imputed)	N
1245	chr7	86594382	86594383	rs6958716	29203360	Sanders MGH	2017-12-02	J Invest Dermatol	The genetics of seborrheic dermatitis: a candidate gene approach and pilot genome-wide association study.	Seborrheic dermatitis	609 European and unknown ancestry cases, 3441 European and unknown ancestry controls	NA	7q21.12	KIAA1324L	rs6958716-?	NR	1E-7				Illumina [9008729] (imputed)	N
1245	chr7	86613097	86613098	rs13221515	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels	3,806 African American individuals	NA	7q21.12		rs13221515-?	NR	5E-6		0.11	[0.063-0.157] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1245	chr7	86623147	86623148	rs552587051	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference	1,254 whole genome sequenced European ancestry individuals, 3,074 whole genome sequenced individuals, 29,716 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 701 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,050 Mylopotamos (founder/genetic isolate) individuals, 883 Pomak (founder/genetic isolate) individuals	205,909 European ancestry individuals	7q21.12	KIAA1324L	rs552587051-A	0.9956	3E-6		0.4355	[0.25-0.62] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1245	chr7	86627797	86627798	rs767434	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	7q21.12	NR	rs767434-?	NR	1E-7				Affymetrix [NR]	N
1246	chr7	86696713	86696714	rs1476587	22479309	Boraska V	2012-03-29	PLoS One	Genome-wide association study to identify common variants associated with brachial circumference: a meta-analysis of 14 cohorts.	Brachial circumference	18,753 European ancestry individuals	3,623 European ancestry individuals	7q21.12	GRM3, DMTF1	rs1476587-G	0.141	7E-6		0.283	[0.16-0.41] unit increase	Affymetrix, Illumina [2238430] (imputed)	N
1246	chr7	86745379	86745380	rs875777	31164008	Mullins N	2019-06-05	Am J Psychiatry	GWAS of Suicide Attempt in Psychiatric Disorders and Association With Major Depression Polygenic Risk Scores.	Suicide attempts in schizophrenia	1,683 European ancestry attempters, 2,946 European ancestry nonattempters	NA	7q21.12	NR	rs875777-C	0.8	7E-6		1.3157895	[1.16-1.49]	NR [8814543] (imputed)	N
1247	chr7	86799440	86799441	rs11982256	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	7q21.12	DMTF1	rs11982256-T	NR	3E-8		1.1376565	[1.09-1.18]	Illumina [6627481] (imputed)	N
1247	chr7	86799440	86799441	rs11982256	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	7q21.12	DMTF1	rs11982256-T	NR	2E-7	(EA)	1.1731582	[1.11-1.23]	Illumina [6627481] (imputed)	N
1247	chr7	86799440	86799441	rs11982256	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	7q21.12	NR	rs11982256-T	NR	1E-7		1.1627907	[NR]	Illumina [7158791] (imputed)	N
1247	chr7	86800179	86800180	rs973044	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs autism spectrum disorder (ordinary least squares (OLS))	40,675 schizophrenia cases, 18,381 autism spectrum disorder cases	NA	7q21.12		rs973044-?	NR	3E-8		0.0167	NR unit decrease	NR [4484088] (imputed)	N
1247	chr7	86821979	86821980	rs11773103	20351715	Liu Y	2010-03-30	Mol Psychiatry	Meta-analysis of genome-wide association data of bipolar disorder and major depressive disorder.	Bipolar disorder or major depressive disorder	4,387 European and unknown ancestry bipolar disorder cases, 1,695 major depressive disorder cases, 7,970 European and unknown ancestry controls	NA	7q21.12	C7orf23, DMTF1	rs11773103-?	NR	1E-6				Affymetrix, Perlegen [1472580] (imputed)	N
1247	chr7	86861312	86861313	rs6942407	25710614	Hong X	2015-02-24	Nat Commun	Genome-wide association study identifies peanut allergy-specific loci and evidence of epigenetic mediation in US children.	Food allergy	671 European ancestry child cases, 144 European ancestry non-allergic non-sensitized child controls, 234 European ancestry uncertain phenotype child controls, 1,148 European ancestry uncertain phenotype adult controls	NA	7q21.12	LOC100289677, TP53TG1	rs6942407-?	NR	8E-6				Illumina [6459842] (imputed)	N
1247	chr7	86874076	86874077	rs74464075	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	7q21.12	NR	rs74464075-?	NR	1E-6	(Native Hawaiian)	1.3228	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1247	chr7	86875777	86875778	rs117049781	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in never smokers	2,355 European ancestry cases,  7,504 European ancestry controls	NA	7q21.12	TMEM243, TP53TG1	rs117049781-T	0.030707815	2E-6		1.6999506	[1.365588806-2.116180046]	Illumina [10439017] (imputed)	N
1247	chr7	86880738	86880738	rs768159759	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	7q21.12	NR	rs768159759-A	0.07503099999999996	1E-21		0.0145917	[0.011-0.018] unit increase	Affymetrix [16582909] (imputed)	N
1247	chr7	86880738	86880738	rs768159759	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	7q21.12	NR	rs768159759-A	0.07516	2E-9		0.0138024	[0.0092-0.0184] unit increase	Affymetrix [16585854] (imputed)	N
1247	chr7	86880738	86880738	rs768159759	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	7q21.12	NR	rs768159759-A	0.07489599999999996	4E-12		0.0140337	[0.0097-0.0183] unit increase	Affymetrix [16582621] (imputed)	N
1247	chr7	86880738	86880738	rs768159759	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	7q21.12	NR	rs768159759-A	0.07503099999999996	2E-16		0.0139693	[0.01-0.017] unit increase	Affymetrix [16582965] (imputed)	N
1247	chr7	86880738	86880738	rs768159759	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	7q21.12	NR	rs768159759-A	0.07516	9E-8		0.0141858	[0.0089-0.0195] unit increase	Affymetrix [16585866] (imputed)	N
1247	chr7	86880738	86880738	rs768159759	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	7q21.12	NR	rs768159759-A	0.07489599999999996	2E-9		0.0128709	[0.0083-0.0175] unit increase	Affymetrix [16582614] (imputed)	N
1247	chr7	86881972	86881973	rs74912003	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	7q21.12	NR	rs74912003-?	NR	5E-8		1.2416036	[1.16-1.32]	Affymetrix, Illumina [12447948] (imputed)	N
1248	chr7	86927202	86927203	rs184072253	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in diabetes mellitus	153 Korean ancestry cases, 5,161 Korean ancestry controls	NA	7q21.12		rs184072253-A	0.01352	4E-6		3.87	[2.174-6.88899999999999]	Affymetrix [7975321] (imputed)	N
1248	chr7	86942824	86942825	rs11762311	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	7q21.12		rs11762311-A	0.057422	2E-9		0.02901685	[0.02-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
1248	chr7	86946823	86946824	rs112300487	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota alpha diversity (Simpson index)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	7q21.12		rs112300487-A	NR	9E-6		4.4458303	z score decrease	Affymetrix, Illumina [NR] (imputed)	N
1248	chr7	86959207	86959208	rs112777546	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	7q21.12		rs112777546-?	NR	8E-9				NR [~ 8900000] (imputed)	N
1248	chr7	86962297	86962298	rs139328189	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in ever smokers	23,223 European ancestry cases,  16,964 European ancestry controls	NA	7q21.12	TP53TG1	rs139328189-C	0.987660471	1E-6		1.619335	[1.33-1.97]	Illumina [10439017] (imputed)	N
1248	chr7	86980948	86980949	rs181732910	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	TRAIL levels	8,186 Finnish ancestry individuals	NA	7q21.12	NR	rs181732910-G		7E-6		0.4284	[0.24-0.62] SD units decrease	NR [10700000] (imputed)	N
1248	chr7	86986143	86986144	rs148791337	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	7q21.12	CROT	rs148791337-C	0.97700716	1E-6		1.3277904	[1.18-1.49]	Illumina [10439017] (imputed)	N
1248	chr7	87006033	87006034	rs77463367	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	7q21.12	CROT	rs77463367-C	0.9296875	2E-13	(CROT, 13929_27_3)	0.34791547	[0.26-0.44] unit increase	Illumina [> 1000000] (imputed)	N
1248	chr7	87014354	87014355	rs7776867	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CROT	5,366 Icelandic ancestry individuals	NA	7q21.12		rs7776867-T	0.0663	5E-24		0.380652	[0.31-0.45] unit decrease	Illumina [7506463] (imputed)	N
1248	chr7	87014928	87014929	rs77270176	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	7q21.12	NR	rs77270176-A	0.059	4E-6	(IFNalpha_ABC_of_CD56brightCD16n)			Illumina [5084123] (imputed)	N
1249	chr7	87059698	87059699	rs31672	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	7q21.12	ABCB4	rs31672-T	0.79	3E-12		7.0	z-score increase	Affymetrix [4314223] (imputed)	N
1249	chr7	87060843	87060844	rs45575636	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	7q21.12	NR	rs45575636-T	NR	1E-11		0.088	[0.063-0.113] unit increase	Affymetrix [9000000] (imputed)	N
1249	chr7	87068463	87068464	rs31674	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	7q21.12	ABCB4	rs31674-?	NR	6E-9		0.0185	[0.013-0.024] unit decrease	Affymetrix [5701386] (imputed)	N
1249	chr7	87074418	87074419	rs4148826	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	7q21.12		rs4148826-C	NR	4E-47		0.0333	[0.029-0.038] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
1249	chr7	87074418	87074419	rs4148826	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	7q21.12	ABCB4	rs4148826-T	0.819549	7E-9		0.0158111	[0.01-0.021] unit increase	Affymetrix [NR] (imputed)	N
1249	chr7	87074963	87074964	rs1468615	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	7q21.12	ABCB4	rs1468615-T	0.82	4E-42		13.6	z-score increase	Affymetrix [4312306] (imputed)	N
1249	chr7	87076586	87076587	rs1014283	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	7q21.12	ABCB4	rs1014283-A	0.275	2E-8		0.0148	[0.0097-0.0199] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1249	chr7	87076586	87076587	rs1014283	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	7q21.12	ABCB4	rs1014283-A	0.275	7E-10		0.0164	[0.011-0.022] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1249	chr7	87079068	87079069	rs1558375	28274756	Mhatre S	2017-03-03	Lancet Oncol	Common genetic variation and risk of gallbladder cancer in India: a case-control genome-wide association study.	Gallbladder cancer	1,042 Indian ancestry cases, 1,709 Indian ancestry controls	428 Indian ancestry cases, 420 Indian ancestry controls	7q21.12	ABCB4	rs1558375-A	0.74	2E-10		1.47	[1.30-1.66]	Illumina [10400000] (imputed)	N
1249	chr7	87079405	87079406	rs2109505	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Alanine transaminase levels	134,182 Japanese ancestry individuals	NA	7q21.12	ABCB4	rs2109505-?	NR	2E-18		0.03699	[0.029-0.045] unit decrease	Illumina [6108953] (imputed)	N
1249	chr7	87079601	87079602	rs4148821	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	150,545 East Asian ancestry individuals	NA	7q21.12		rs4148821-C	0.275621	3E-21		0.0359262	[0.028-0.043] unit decrease	Illumina [13478866] (imputed)	N
1249	chr7	87079601	87079602	rs4148821	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Alanine aminotransferase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	7q21.12	ABCB4	rs4148821-?		1E-19		0.0361	[0.028-0.044] unit increase	Illumina [31500000] (imputed)	N
1249	chr7	87082291	87082292	rs1202283	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	7q21.12	NR	rs1202283-A	NR	5E-16		0.0196	[0.015-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
1249	chr7	87082291	87082292	rs1202283	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	7q21.12	NR	rs1202283-A	NR	2E-14		0.0184	[0.014-0.023] unit increase	Affymetrix [9000000] (imputed)	N
1249	chr7	87085208	87085209	rs17149637	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cholecystitis	9,820 European ancestry cases, 461,431 European ancestry controls, 1,860 East Asian ancestry cases, 168,253 East Asian ancestry controls	NA	7q21.12		rs17149637-A	NR	2E-14		0.1631	[0.12-0.2] unit decrease	Affymetrix, Illumina [25842273] (imputed)	N
1249	chr7	87096478	87096479	rs112369941	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cholelithiasis	9,305 East Asian ancestry cases, 168,253 East Asian ancestry controls	NA	7q21.12		rs112369941-G	0.283909561	3E-8		0.09601785	[0.062-0.13] unit decrease	Illumina [13429768] (imputed)	N
1249	chr7	87101406	87101407	rs4148812	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	7q21.12	NR	rs4148812-C	0.706943	1E-14		0.016681	[0.012-0.021] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
1249	chr7	87104449	87104450	rs151095285	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 8, orbital inclination due to vertical and horizontal position of exocanthion)	2,187 European ancestry individuals	NA	7q21.12	NR	rs151095285-G	0.009404	5E-6		0.6942	[0.4-0.99] unit increase	Illumina [34985077] (imputed)	N
1249	chr7	87105158	87105159	rs2071646	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	7q21.12	ABCB4	rs2071646-G	0.258523	1E-11		0.017318735	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1249	chr7	87105158	87105159	rs2071646	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	7q21.12	ABCB4	rs2071646-G	0.258527	8E-12		0.017497862	[0.012-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1249	chr7	87105158	87105159	rs2071646	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	7q21.12	ABCB4	rs2071646-G	0.258509	1E-10		0.016289825	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1249	chr7	87105158	87105159	rs2071646	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	7q21.12	ABCB4	rs2071646-G	0.258518	3E-11		0.016989931	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1249	chr7	87105158	87105159	rs2071646	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	7q21.12	ABCB4	rs2071646-G	0.258542	2E-9		0.015351311	[0.01-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1249	chr7	87105158	87105159	rs2071646	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	7q21.12	ABCB4	rs2071646-G	0.258545	1E-9		0.015521447	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1249	chr7	87105175	87105176	rs55976025	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	7q21.12		rs55976025-C	NR	1E-8		0.0131	[0.0086-0.0176] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1249	chr7	87105794	87105795	rs4148808	30504769	Ferkingstad E	2018-11-30	Nat Commun	Genome-wide association meta-analysis yields 20 loci associated with gallstone disease.	Gallstone disease	27,174 European ancestry cases, 736,838 European ancestry controls	NA	7q21.12	ABCB4	rs4148808-?		9E-28		1.1627907	[1.14-1.19]	Affymetrix, Illumina [43000000] (imputed)	N
1249	chr7	87106364	87106365	rs4148805	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cholelithiasis	26,122 European ancestry cases, 461,431 European ancestry controls, 9,305 East Asian ancestry cases, 168,253 East Asian ancestry controls	NA	7q21.12		rs4148805-A	NR	2E-36		0.1386	[0.12-0.16] unit decrease	Affymetrix, Illumina [25844936] (imputed)	N
1249	chr7	87110639	87110640	rs45537841	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	7q21.12		rs45537841-T	NR	1E-8		0.0152	[0.0099-0.0205] unit decrease	Affymetrix, Illumina [20521447] (imputed)	N
1249	chr7	87110639	87110640	rs45537841	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	7q21.12	ABCB4	rs45537841-C	0.819292	4E-9		0.0159262	[0.011-0.021] unit increase	Affymetrix [NR] (imputed)	N
1249	chr7	87113000	87113001	rs6465116	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	7q21.12		rs6465116-A	NR	1E-12		0.0181	[0.013-0.023] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
1249	chr7	87122021	87122022	rs2178658	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	7q21.12		rs2178658-T	0.261783	4E-11		0.016871247	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1249	chr7	87122021	87122022	rs2178658	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q21.12	NR	rs2178658-G	0.708266	3E-12				Affymetrix, Illumina [22063850] (imputed)	N
1249	chr7	87122021	87122022	rs2178658	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	7q21.12		rs2178658-?	NR	3E-14				NR [~ 8900000] (imputed)	N
1249	chr7	87122021	87122022	rs2178658	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	7q21.12	NR	rs2178658-T	NR	3E-8		0.023466	[0.015-0.032] unit decrease	Affymetrix [16832071] (imputed)	N
1249	chr7	87124821	87124822	rs17209837	28274756	Mhatre S	2017-03-03	Lancet Oncol	Common genetic variation and risk of gallbladder cancer in India: a case-control genome-wide association study.	Gallbladder cancer	1,042 Indian ancestry cases, 1,709 Indian ancestry controls	428 Indian ancestry cases, 420 Indian ancestry controls	7q21.12	ABCB1	rs17209837-A	0.85	2E-9		1.61	[1.38-1.89]	Illumina [10400000] (imputed)	N
1249	chr7	87127098	87127099	rs55747905	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	7q21.12	ABCB1	rs55747905-T	0.819267	5E-33		0.00602034	[0.005-0.007] unit increase	Affymetrix [13995440] (imputed)	N
1249	chr7	87138510	87138511	rs2235048	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	7q21.12	NR	rs2235048-A	0.421	2E-6	(IFNalpha_ABC_of_CD56brightCD16n)			Illumina [5084123] (imputed)	N
1250	chr7	87169701	87169702	rs12720066	33218114	Rebelo MA	2020-11-18	Brain Sci	Genome-Wide Scan for Five Brain Oscillatory Phenotypes Identifies a New QTL Associated with Theta EEG Band.	Alpha electroencephalogram power	191 European ancestry individuals	NA	7q21.12	NR	rs12720066-?	NR	1E-6		0.1	NR unit increase	Affymetrix [388620]	N
1250	chr7	87173101	87173102	rs28381924	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	7q21.12	NR	rs28381924-A	NR	5E-8	(GEE model)	1.0778	[0.69-1.46] unit decrease	NR [NR] (imputed)	N
1250	chr7	87179442	87179443	rs2032588	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	7q21.12	NR	rs2032588-A	NR	2E-15		0.0394	[0.03-0.049] unit increase	Affymetrix [9000000] (imputed)	N
1250	chr7	87179442	87179443	rs2032588	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	7q21.12	NR	rs2032588-A	NR	1E-13		0.0366	[0.027-0.046] unit decrease	Affymetrix [9000000] (imputed)	N
1250	chr7	87188091	87188092	rs56364292	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7q21.12		rs56364292-?	NR	9E-17				NR [~ 8900000] (imputed)	N
1250	chr7	87200466	87200467	rs6950978	32913026	Knol MJ	2020-09-10	Neurology	Association of common genetic variants with brain microbleeds: A Genome-wide Association Study.	Cerebral microbleeds	3,321 European ancestry cases, 42 Chinese ancestry cases, 75 Malay ancestry cases, 118 African American cases, 21,785 European ancestry controls, 88 Chinese ancestry controls, 129 Malay ancestry controls, 304 African American controls	NA	7q21.12	ABCB1	rs6950978-A	0.7	3E-7		0.86	NR	Affymetrix, Illumina [NR] (imputed)	N
1250	chr7	87202543	87202544	rs10280623	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	7q21.12	ABCB1	rs10280623-T	0.803	3E-11		0.0158	[0.011-0.021] unit decrease	Affymetrix [18391927] (imputed)	N
1250	chr7	87204278	87204279	rs1202179	32756886	Nunez-Torres R	2020-08-05	JAMA Dermatol	Association Between ABCB1 Genetic Variants and Persistent Chemotherapy-Induced Alopecia in Women With Breast Cancer.	Persistent chemotherapy-induced alopecia in breast cancer	51 European ancestry cases, 122 European ancestry controls	20 European ancestry cases, 22 European ancestry controls	7q21.12	ABCB1	rs1202179-C		4E-8		4.05	[2.46-6.67]	Illumina [693898]	N
1250	chr7	87219480	87219481	rs13229143	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Chickenpox	107,769 European ancestry cases, 15,982 European ancestry controls	NA	7q21.12	NR	rs13229143-?	NR	1E-6		0.0603	[0.036-0.085] unit decrease	Illumina [at least 560000] (imputed)	N
1250	chr7	87244959	87244960	rs13233308	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	67,764 individuals	NA	7q21.12	NR	rs13233308-?		2E-9				NR [8377093]	N
1250	chr7	87244959	87244960	rs13233308	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	65,967 individuals	NA	7q21.12	NR	rs13233308-?		2E-8				NR [8377093]	N
1250	chr7	87244959	87244960	rs13233308	31320639	Hillary RF	2019-07-18	Nat Commun	Genome and epigenome wide studies of neurological protein biomarkers in the Lothian Birth Cohort 1936.	Neurological blood protein biomarker levels	750 European ancestry individuals	NA	7q21.12	ABCB1	rs13233308-T	0.4815	6E-13	(ADAM 22)	0.37657	[0.27-0.48] unit increase	Illumina [8683751] (imputed)	N
1250	chr7	87244959	87244960	rs13233308	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	7q21.12	NR	rs13233308-C	NR	3E-7		1.0526316	[NR]	Illumina [7158791] (imputed)	N
1250	chr7	87262580	87262581	rs10264856	26312577	Tan LJ	2015-08-27	J Clin Endocrinol Metab	Bivariate Genome-Wide Association Study Implicates ATP6V1G1 as a Novel Pleiotropic Locus Underlying Osteoporosis and Age at Menarche.	Bone mineral density (spine) and age at menarche	826 Han Chinese ancestry females	1,728 European ancestry females, 709 African American females, 408 Hispanic/Latin American females	7q21.12	ABCB1	rs10264856-?		8E-7	(East Asian)			Affymetrix [702413]	N
1250	chr7	87270499	87270500	rs2157926	26312577	Tan LJ	2015-08-27	J Clin Endocrinol Metab	Bivariate Genome-Wide Association Study Implicates ATP6V1G1 as a Novel Pleiotropic Locus Underlying Osteoporosis and Age at Menarche.	Bone mineral density (spine) and age at menarche	826 Han Chinese ancestry females	1,728 European ancestry females, 709 African American females, 408 Hispanic/Latin American females	7q21.12	ABCB1	rs2157926-?		2E-6	(East Asian)			Affymetrix [702413]	N
1251	chr7	87374868	87374869	rs114137957	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	7q21.12	RUNDC3B	rs114137957-?	NR	1E-6				Affymetrix [5486770] (imputed)	N
1251	chr7	87391160	87391161	rs35648408	30868120	Berghuis B	2019-01-17	Epilepsia Open	A genome-wide association study of sodium levels and drug metabolism in an epilepsy cohort treated with carbamazepine and oxcarbazepine.	Carbamazepine-induced hyponatremia in epilepsy	331 European ancestry cases, 700 European ancestry controls	NA	7q21.12	NR	rs35648408-?		4E-6		1.7857143	[1.39-2.27]	Illumina [NR]	N
1252	chr7	87455154	87455155	rs6966166	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	7q21.12	ADAM22	rs6966166-T	0.47765625	1E-11	(ADAM22, 7933_75_3)	0.1769273	[0.13-0.23] unit decrease	Illumina [> 1000000] (imputed)	N
1252	chr7	87462514	87462515	rs10232457	26312577	Tan LJ	2015-08-27	J Clin Endocrinol Metab	Bivariate Genome-Wide Association Study Implicates ATP6V1G1 as a Novel Pleiotropic Locus Underlying Osteoporosis and Age at Menarche.	Bone mineral density (spine) and age at menarche	826 Han Chinese ancestry females	1,728 European ancestry females, 709 African American females, 408 Hispanic/Latin American females	7q21.12	RUNDC3B	rs10232457-?		9E-7	(East Asian)			Affymetrix [702413]	N
1252	chr7	87514831	87514832	rs12669619	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	7q21.12		rs12669619-C	NR	5E-8		0.0182	[0.012-0.025] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
1252	chr7	87543036	87543037	rs6966264	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	7q21.12	NR	rs6966264-?	NR	4E-6				Affymetrix [5486770] (imputed)	N
1253	chr7	87564496	87564497	rs2279542	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ADAM22	5,364 Icelandic ancestry individuals	NA	7q21.12		rs2279542-G	0.4817	6E-17		0.159959	[0.12-0.2] unit decrease	Illumina [7506463] (imputed)	N
1253	chr7	87573646	87573647	rs12019361	21221126	Shen Y	2011-01-11	Pharmacogenomics J	Genome-wide association study of serious blistering skin rash caused by drugs.	Drug-induced Stevens-Johnson syndrome or toxic epidermal necrolysis (SJS/TEN)	up to 72 European ancestry cases, up to 4,251 European ancestry controls	NA	7q21.12	ADAM22	rs12019361-?	NR	7E-6	(Lamotrigine)	12.0	[NR]	Illumina [up to 1000000]	N
1253	chr7	87576970	87576971	rs73200363	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	7q21.12	NR	rs73200363-C	NR	6E-10		0.0374	[0.026-0.049] unit increase	Affymetrix [9000000] (imputed)	N
1253	chr7	87631525	87631526	rs1201841	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	7q21.12	DBF4	rs1201841-?	NR	4E-6	(xanthine)	0.48318216	[0.28-0.69] unit increase	Affymetrix [at least 2500000] (imputed)	N
1253	chr7	87677523	87677524	rs73202341	31564439	Fang H	2019-09-26	Am J Hum Genet	Harmonizing Genetic Ancestry and Self-identified Race/Ethnicity in Genome-wide Association Studies.	Height	up to 248,507 non-Hispanic white individuals, up to 68,155 non-Hispanic black individuals, up to 25,847 Hispanic individuals, up to 3,054 Asian ancestry individuals	NA	7q21.12	NR	rs73202341-C	NR	3E-8	(EA)	0.12	NR unit increase	Affymetrix [723305]	N
1253	chr7	87677523	87677524	rs73202341	31564439	Fang H	2019-09-26	Am J Hum Genet	Harmonizing Genetic Ancestry and Self-identified Race/Ethnicity in Genome-wide Association Studies.	Height	up to 248,507 non-Hispanic white individuals, up to 68,155 non-Hispanic black individuals, up to 25,847 Hispanic individuals, up to 3,054 Asian ancestry individuals	NA	7q21.12	NR	rs73202341-C	NR	2E-6				Affymetrix [723305]	N
1254	chr7	87761457	87761458	rs989616	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ADAM22	5,364 Icelandic ancestry individuals	NA	7q21.12		rs989616-G	0.3803	5E-9		0.112695	[0.075-0.15] unit decrease	Illumina [7506463] (imputed)	N
1257	chr7	88118125	88118126	rs17167034	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	7q21.12	NR	rs17167034-?	NR	4E-9				Affymetrix [NR]	N
1258	chr7	88244248	88244249	rs118071777	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	7q21.13	Intergenic	rs118071777-A	NR	7E-7	(between families)	4.951	unit increase	Affymetrix [up to 15107142] (imputed)	N
1258	chr7	88310898	88310899	rs6465151	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	7q21.13	NR	rs6465151-T	0.1134	2E-9		1.058	[1.04-1.08]	Affymetrix, Illumina [NR] (imputed)	N
1259	chr7	88359059	88359060	rs10952927	33239738	Didriksen M	2020-11-25	Commun Biol	Large genome-wide association study identifies three novel risk variants for restless legs syndrome.	Restless legs syndrome	10,257 European ancestry cases, 470,725 European ancestry controls	up to 15,126 European ancestry cases, up to 95,725 European ancestry controls	7q21.13	NR	rs10952927-G	0.13	4E-21		1.15	[1.12-1.18]	Affymetrix, Illumina [15838848] (imputed)	N
1259	chr7	88359059	88359060	rs10952927	29029846	Schormair B	2017-11-01	Lancet Neurol	Identification of novel risk loci for restless legs syndrome in genome-wide association studies in individuals of European ancestry: a meta-analysis.	Restless legs syndrome	15,126 European ancestry cases, 95,725 European ancestry controls	30,770 European ancestry cases, 286,913 European ancestry controls	7q21.13	ADAM2, STEAP4, ZNF804B	rs10952927-G	0.13	2E-34		1.13	[1.11-1.15]	Affymetrix, Illumina [6864281] (imputed)	N
1259	chr7	88406551	88406552	rs73705514	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Logical memory (immediate recall) in mild cognitive impairment	581 European ancestry mild cognitive impairment cases	NA	7q21.13	ZNF804B, EEF1A1P28, C7orf62	rs73705514-C	0.02	5E-6		0.7	[0.41-0.99] unit decrease	Illumina [7992243] (imputed)	N
1259	chr7	88406551	88406552	rs73705514	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Logical memory (delayed recall) in mild cognitive impairment	581 European ancestry mild cognitive impairment cases	NA	7q21.13	ZNF804B, EEF1A1P28, C7orf6	rs73705514-C	0.02	3E-9		0.84	[0.57-1.11] unit decrease	Illumina [7992243] (imputed)	N
1259	chr7	88442567	88442568	rs4727189	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	7q21.13	NR	rs4727189-C	0.344	6E-10		0.00700144	[0.0048-0.0092] unit increase	NR [9732723] (imputed)	N
1259	chr7	88442567	88442568	rs4727189	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	7q21.13	NR	rs4727189-C	0.344	3E-8		0.014860439	[0.0096-0.0201] unit increase	NR [~ 10000000] (imputed)	N
1260	chr7	88481441	88481442	rs10248351	22493691	Eriksson N	2012-04-06	PLoS One	Novel associations for hypothyroidism include known autoimmune risk loci.	Hypothyroidism	3,736 European ancestry cases, 35,546 European ancestry controls	NA	7q21.13	ZNF804B, C7orf62	rs10248351-C	0.007	7E-6		1.843	[1.43-2.37]	Illumina [870065]	N
1260	chr7	88546343	88546344	rs12666963	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Lateral ventricle volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	7q21.13	ZNF804B	rs12666963-?		3E-7				Illumina [4322238] (imputed)	N
1260	chr7	88552126	88552127	rs17301259	25130324	Cai DC	2014-08-29	Genes Brain Behav	A genome-wide search for quantitative trait loci affecting the cortical surface area and thickness of Heschl's gyrus.	Heschl's gyrus morphology	1,778 European ancestry individuals, 1,276 individuals	NA	7q21.13	ZNF804B	rs17301259-A	0.76	4E-6	(Right HG area)	6.93	unit increase	Affymetrix, Illumina [4103035] (imputed)	N
1260	chr7	88560877	88560878	rs1406503	20966902	Croteau-Chonka DC	2010-10-21	Obesity (Silver Spring)	Genome-wide association study of anthropometric traits and evidence of interactions with age and study year in Filipino women.	Body mass index	1,780 Filipino ancestry females	NA	7q21.13	ZNF804B	rs1406503-C	0.05	9E-6		0.07	[0.04-0.10] unit increase	Affymetrix [2073674] (imputed)	N
1260	chr7	88573470	88573471	rs12535041	29514873	Mychaleckyj JC	2018-03-07	J Med Genet	Multiplex genomewide association analysis of breast milk fatty acid composition extends the phenotypic association and potential selection of FADS1 variants to arachidonic acid, a critical infant micronutrient.	Breast milk fatty acid composition (maternal genotype effect)	1,142 Bangladeshi ancestry (non-array genotyped, whole-genome imputed) mothers	NA	7q21.13	ZNF804B	rs12535041-A	0.93	5E-9	(oleic acid)	1.19	[-0.8288-3.2088] unit increase	Illumina [~ 932000] (imputed)	N
1260	chr7	88573470	88573471	rs12535041	29514873	Mychaleckyj JC	2018-03-07	J Med Genet	Multiplex genomewide association analysis of breast milk fatty acid composition extends the phenotypic association and potential selection of FADS1 variants to arachidonic acid, a critical infant micronutrient.	Breast milk fatty acid composition (maternal genotype effect)	1,142 Bangladeshi ancestry (non-array genotyped, whole-genome imputed) mothers	NA	7q21.13	ZNF804B	rs12535041-A	0.93	5E-8	(monounsaturated fatty acid)	1.18	[-0.8388-3.1988] unit increase	Illumina [~ 932000] (imputed)	N
1260	chr7	88573470	88573471	rs12535041	29514873	Mychaleckyj JC	2018-03-07	J Med Genet	Multiplex genomewide association analysis of breast milk fatty acid composition extends the phenotypic association and potential selection of FADS1 variants to arachidonic acid, a critical infant micronutrient.	Breast milk fatty acid composition (infant genotype effect)	1,142 Bangladeshi ancestry infants	NA	7q21.13	ZNF804B	rs12535041-A	0.93	5E-6	(oleic acid)			Illumina [~ 932000]	N
1260	chr7	88596384	88596385	rs6959888	21079607	Wang K	2010-11-16	Mol Psychiatry	A genome-wide association study on common SNPs and rare CNVs in anorexia nervosa.	Anorexia nervosa	1,033 European ancestry cases, 3,733 European ancestry controls	NA	7q21.13	ZNF804B	rs6959888-?	0.11	2E-6				Illumina [~ 598000]	N
1260	chr7	88599784	88599785	rs3899697	24700089	Miura K	2014-04-04	J Med Virol	Genome-wide association study of HPV-associated cervical cancer in Japanese women.	Cervical cancer	226 Japanese ancestry cases, 186 Japanese ancestry controls	NA	7q21.13	ZNF804B	rs3899697-A	0.2787	9E-6		1.949	[1.449-2.621]	Affymetrix [556045]	N
1261	chr7	88695069	88695070	rs10236237	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	7q21.13	NR	rs10236237-T	0.267901504028648	7E-6	(IGP6)	0.1584	[0.089-0.228] unit decrease	Illumina [~ 2500000] (imputed)	N
1261	chr7	88695069	88695070	rs10236237	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	7q21.13	NR	rs10236237-T	0.267777818671454	5E-6	(IGP46)	0.1613	[0.092-0.23] unit decrease	Illumina [~ 2500000] (imputed)	N
1261	chr7	88695069	88695070	rs10236237	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	7q21.13	NR	rs10236237-T	0.26751565049416	6E-6	(IGP60)	0.16	[0.091-0.229] unit increase	Illumina [~ 2500000] (imputed)	N
1262	chr7	88737191	88737192	rs10242213	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	7q21.13	MGC26647	rs10242213-?	NR	1E-6	(dimethylglycine)	0.20618367	[0.12-0.29] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1262	chr7	88770626	88770627	rs10233510	32771030	Tangtanatakul P	2020-08-08	Arthritis Res Ther	Meta-analysis of genome-wide association study identifies FBN2 as a novel locus associated with systemic lupus erythematosus in Thai population.	Systemic lupus erythematosus	487 Thai cases, 1,606 Thai controls	405 Thai cases, 1,590 Thai controls	7q21.13	ZNF804B	rs10233510-G	0.34	1E-6		0.755	[NR]	Illumina [421909] (imputed)	N
1262	chr7	88784229	88784230	rs2189071	32701715	Zhang Y	2020-07-21	J Bone Joint Surg Am	PPARGC1B Is Associated with Nontraumatic Osteonecrosis of the Femoral Head: A Genomewide Association Study on a Chart-Reviewed Cohort.	Nontraumatic osteonecrosis of the femoral head	118 European ancestry cases, 56,811 European ancestry controls	NA	7q21.13	ZNF804B	rs2189071-T	0.013	1E-7		5.01	[2.76-9.10]	Illumina [3905175] (imputed)	N
1262	chr7	88843760	88843761	rs13438433	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	7q21.13	MGC26647	rs13438433-?	NR	5E-6	(quinolinic acid)	0.42513335	[0.24-0.61] unit increase	Affymetrix [at least 2500000] (imputed)	N
1262	chr7	88847070	88847071	rs11761593	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	7q21.13	MGC26647	rs11761593-?	NR	2E-6	(isoleucine)	0.39738086	[0.23-0.56] unit increase	Affymetrix [at least 2500000] (imputed)	N
1262	chr7	88847070	88847071	rs11761593	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	7q21.13	MGC26647	rs11761593-?	NR	1E-6	(ornithine)	0.40693048	[0.24-0.57] unit increase	Affymetrix [at least 2500000] (imputed)	N
1263	chr7	88978686	88978687	rs12536521	30456828	Khramtsova EA	2018-11-20	Am J Med Genet B Neuropsychiatr Genet	Sex differences in the genetic architecture of obsessive-compulsive disorder.	Obsessive-compulsive disorder	1,249 European ancestry male cases, 2,789 European ancestry male controls, 1,525 European ancestry female cases, 4,307 European ancestry female controls	NA	7q21.13	Intergenic	rs12536521-?		3E-7	(female)	1.378	[0.85-1.9] unit increase	NR [~ 5500000] (imputed)	N
1264	chr7	89060732	89060733	rs6973392	23259602	Wang X	2012-12-21	BMC Oral Health	Genome-wide association scan of dental caries in the permanent dentition.	Dental caries	1,483 European ancestry comparatively younger individuals, 5,960 European ancestry comparatively older individuals	NA	7q21.13	ZNF804B	rs6973392-?	NR	7E-6	(Comparatively Younger)			Affymetrix, Illumina [~ 1400000] (imputed)	N
1265	chr7	89175283	89175284	rs190116504	34620984	Skuladottir AT	2021-10-07	Commun Biol	A genome-wide meta-analysis uncovers six sequence variants conferring risk of vertigo.	Vertigo	48,072 European ancestry cases, 894,541 European ancestry controls	NA	7q21.13		rs190116504-G	NR	1E-6		2.84056		Affymetrix, Illumina [62056310] (imputed)	N
1266	chr7	89271994	89271995	rs187012941	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	7q21.13		rs187012941-G	0.0052012	5E-7		0.23801	[0.15-0.33] unit increase	Affymetrix [15580782] (imputed)	N
1266	chr7	89327995	89327996	rs76926936	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Ovarian cancer (MTAG)	647 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	7q21.13	Intergenic	rs76926936-?		9E-6		1.07	[1.04-1.11]	Illumina [7645193] (imputed)	N
1266	chr7	89327995	89327996	rs76926936	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Ovarian cancer	647 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	7q21.13	Intergenic	rs76926936-?		8E-6		1.84	[1.41-2.41]	Illumina [7645193] (imputed)	N
1266	chr7	89327995	89327996	rs76926936	30557369	Yodsurang V	2018-12-17	PLoS One	Genome-wide association study (GWAS) of ovarian cancer in Japanese predicted regulatory variants in 22q13.1.	Ovarian cancer	681 Japanese ancestry cases, 17,492 Japanese ancestry controls	NA	7q21.13	ZNF804B	rs76926936-T	0.0517	9E-6		1.923077	[1.44-2.56]	Illumina [7521072] (imputed)	N
1268	chr7	89554118	89554119	rs147692810	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (positive Marder score)	1,390 European ancestry cases	NA	7q21.13		rs147692810-C	NR	5E-6	(GLM)	2.9933	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
1268	chr7	89624346	89624347	rs259140	30510157	Franceschini N	2018-12-03	Nat Commun	GWAS and colocalization analyses implicate carotid intima-media thickness and carotid plaque loci in cardiovascular outcomes.	Carotid plaque	Up to 21,540 European ancestry cases, up to 26,894 European ancestry controls	NA	7q21.13	STEAP2-AS1	rs259140-T	0.3	5E-7		0.0889	[0.054-0.124] unit increase	Affymetrix, Illumina [8578107] (imputed)	N
1268	chr7	89628634	89628635	rs73215715	25130324	Cai DC	2014-08-29	Genes Brain Behav	A genome-wide search for quantitative trait loci affecting the cortical surface area and thickness of Heschl's gyrus.	Heschl's gyrus morphology	1,778 European ancestry individuals, 1,276 individuals	NA	7q21.13	DPY19L2P4	rs73215715-A	0.27	9E-6	(Right HG area)	4.95	unit increase	Affymetrix, Illumina [4103035] (imputed)	N
1268	chr7	89635139	89635140	rs187656674	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	7q21.13	NR	rs187656674-?	NR	5E-6		4.586	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1268	chr7	89636223	89636224	rs7798970	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Inflammatory skin disease	2,079 European ancestry atopic dermatitis cases, 4,212 European ancestry psoriasis cases, 11,899 European ancestry controls	NA	7q21.13	STEAP2-AS1	rs7798970-?	NR	3E-6	(Shared)			Affymetrix, Illumina [~ 5200000]	N
1269	chr7	89662673	89662674	rs17687539	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Coffee consumption	335,909 European ancestry individuals	39,924 European ancestry individuals	7q21.13	STEAP2-AS1	rs17687539-A	0.792	4E-8		0.01	[0.0065-0.0135] unit increase	Affymetrix [~ 7740000] (imputed)	N
1269	chr7	89734317	89734318	rs39204	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	7q21.13		rs39204-?	0.1905	4E-8		1.0344808	[1.02201111164696-1.04710272234666]	Illumina [8919992] (imputed)	N
1269	chr7	89740017	89740018	rs39218	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	7q21.13		rs39218-C	0.229497779	1E-9		1.0622305	[1.041723245-1.083141276]	Illumina [8919992] (imputed)	N
1269	chr7	89746629	89746630	rs39223	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	7q21.13		rs39223-G	0.229730137	3E-10		0.06890343	[0.048-0.09] unit increase	Illumina [13429769] (imputed)	N
1269	chr7	89763863	89763864	rs10266254	23870195	Wojczynski MK	2013-07-19	BMC Med Genet	Genetics of coronary artery calcification among African Americans, a meta-analysis.	Coronary artery calcification	5,823 African American individuals	9,992 European ancestry individuals	7q21.13	STEAP1	rs10266254-A	0.96	6E-6	(AA)	0.61	[0.34-0.88] unit decrease	Affymetrix, Illumina [up to 2727966] (imputed)	N
1269	chr7	89772483	89772484	rs4728871	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	7q21.13		rs4728871-A	NR	7E-12		0.0167	[0.012-0.021] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1270	chr7	89800052	89800053	rs13242882	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	200,622 European ancestry individuals	NA	7q21.13	STEAP2-AS1	rs13242882-A	0.4642	9E-9		0.0097	[0.0064-0.013] unit decrease	Affymetrix, Illumina [34064007] (imputed)	N
1270	chr7	89803633	89803634	rs6956980	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	7q21.13	NR	rs6956980-C	0.4669	1E-13		0.0284	[0.021-0.036] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1270	chr7	89805240	89805241	rs11770630	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	7q21.13	STEAP2	rs11770630-T	0.535	2E-20		0.1599	[0.13-0.19] unit increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1270	chr7	89807295	89807296	rs10270950	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	7q21.13	STEAP2	rs10270950-A	0.5227	4E-14		0.1431	[0.11-0.18] mmHg increase	Affymetrix [NR] (imputed)	N
1270	chr7	89818944	89818945	rs11763820	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	7q21.13		rs11763820-G	NR	3E-11		0.0138	[0.0097-0.0179] unit increase	Affymetrix, Illumina [20535873] (imputed)	N
1270	chr7	89824476	89824477	rs6465247	30942860	Shin J	2019-04-03	J Clin Endocrinol Metab	Novel genetic locus of visceral fat and systemic inflammation.	Visceral fat	1589 French-Canadian ancestry individuals	NA	7q21.13	Intergenic	rs6465247-G	NR	7E-6	(adjusted for subcutaneous fat)	0.084	[0.047-0.121] unit increase	Illumina [8511049] (imputed)	N
1270	chr7	89825281	89825282	rs397714909	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	7q21.13		rs397714909-G	NR	9E-13		0.0153	[0.011-0.019] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
1270	chr7	89841306	89841307	rs194505	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	7q21.13		rs194505-A	NR	8E-16		0.0169	[0.013-0.021] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
1270	chr7	89854445	89854446	rs194520	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	7q21.13		rs194520-T	0.4522	1E-16		0.13617696	[0.1-0.17] mmHg decrease	Affymetrix, Illumina [242866] (imputed)	N
1270	chr7	89854445	89854446	rs194520	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	7q21.13		rs194520-T	0.4522	4E-14		0.11328232	[0.084-0.142] mmHg increase	Affymetrix, Illumina [242866] (imputed)	N
1270	chr7	89873766	89873767	rs9691522	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Longevity	up to 482,000 European ancestry individuals	NA	7q21.13	NR	rs9691522-A	NR	6E-8		0.0764	[0.049-0.104] unit decrease	Illumina [~ 540852]	N
1270	chr7	89880948	89880949	rs10240790	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	7q21.13	NR	rs10240790-G	0.7043	5E-8		0.0279	[0.018-0.038] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1271	chr7	89977759	89977760	rs42648	23824729	van Meurs JB	2013-07-03	Am J Clin Nutr	Common genetic loci influencing plasma homocysteine concentrations and their effect on risk of coronary artery disease.	Homocysteine levels	44,147 European ancestry individuals	NA	7q21.13	GTPB10	rs42648-A	0.4	2E-8		0.0395	[0.026-0.053] unit decrease	Affymetrix, Illumina [2090256] (imputed)	N
1271	chr7	89984408	89984409	rs42664	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	7q21.13		rs42664-A	0.4154	2E-12		0.10663426	[0.075-0.138] mmHg decrease	Affymetrix, Illumina [242866] (imputed)	N
1271	chr7	89984408	89984409	rs42664	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	7q21.13		rs42664-A	0.4155	5E-9		0.08436894	[0.057-0.112] mmHg increase	Affymetrix, Illumina [242866] (imputed)	N
1272	chr7	90067762	90067763	rs17863107	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	7q21.13		rs17863107-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1272	chr7	90073405	90073406	rs10487112	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Perceived unattractiveness to mosquitoes	16,576 European ancestry individuals	NA	7q21.13	intergenic	rs10487112-T	NR	2E-6		0.11046	[0.065-0.156] unit increase	Illumina [7433384] (imputed)	N
1273	chr7	90250641	90250642	rs113692724	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Growth-regulated protein alpha levels	3,505 Finnish ancestry individuals	NA	7q21.13	NR	rs113692724-G		4E-6		0.7235	[0.42-1.03] SD units decrease	NR [10700000] (imputed)	N
1273	chr7	90297176	90297177	rs67617547	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	7q21.13		rs67617547-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1274	chr7	90318473	90318474	rs10272859	29246937	Li Y	2018-02-15	Clin Cancer Res	Genome-Wide Association Study Identifies a New Locus at 7q21.13 Associated with Hepatitis B Virus-Related Hepatocellular Carcinoma.	Hepatitis B virus-related hepatocellular carcinoma	348 Chinese ancestry carrier cases, 359 Chinese ancestry carrier controls, 189 Chinese ancestry trios	3,796 Chinese ancestry carrier cases, 2,544 Chinese ancestry carrier controls	7q21.13	CDK14	rs10272859-G	0.313	9E-10		1.28	[1.18-1.38]	Affymetrix, Illumina [up to 6089459] (imputed)	N
1274	chr7	90427392	90427393	rs12666502	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	7q21.13		rs12666502-G	0.779	1E-8		0.009	[0.0051-0.0129] unit decrease	NR [NR] (imputed)	N
1275	chr7	90449361	90449362	rs10245696	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	NA	7q21.13	CDK14	rs10245696-A	0.4002	1E-13		0.1549	[0.11-0.2] unit increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1275	chr7	90483402	90483403	rs57870103	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7q21.13	NR	rs57870103-G	0.02439	5E-9	(APRT)	0.1737	NR unit decrease	Illumina [1671387] (imputed)	N
1275	chr7	90486821	90486822	rs10487988	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	7q21.13	CDK14	rs10487988-A	0.1707	3E-9		0.1543	[0.1-0.21] mmHg increase	Affymetrix [NR] (imputed)	N
1275	chr7	90493763	90493764	rs887461	30217807	Robinson-Cohen C	2018-09-14	J Am Soc Nephrol	Genetic Variants Associated with Circulating Fibroblast Growth Factor 23.	Circulating fibroblast growth factor 23 levels	16,624 European ancestry individuals	4,443 African ancestry individuals	7q21.13	CDK14	rs887461-A	0.7244	2E-6	(EA)	0.023	[0.013-0.033] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1275	chr7	90504066	90504067	rs10953024	28429243	Dudenkov TM	2017-04-20	Breast Cancer Res Treat	SLCO1B1 polymorphisms and plasma estrone conjugates in postmenopausal women with ER+ breast cancer: genome-wide association studies of the estrone pathway.	Estrone/androstenedione ratio in resected early stage-receptor positive breast cancer	707 European ancestry postmenopausal cases, 52 African ancestry postmenopausal cases, 15 Asian ancestry postmenopausal cases	NA	7q21.13	CDK14	rs10953024-C	0.088	1E-6		0.49	[0.29-0.69] unit decrease	Illumina [8203257] (imputed)	N
1276	chr7	90615972	90615973	rs3808274	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Myringotomy	4,138 European ancestry cases, 85,089 European ancestry controls	NA	7q21.13	NR	rs3808274-?	NR	7E-7		2.9343	[0.87-5] unit increase	Illumina [at least 560000] (imputed)	N
1276	chr7	90645470	90645471	rs79059379	29698431	Roosenboom J	2018-04-26	PLoS One	Mapping genetic variants for cranial vault shape in humans.	Cephalic index	4,419 European ancestry individuals	NA	7q21.13	NR	rs79059379-A	0.1623	5E-6		0.4793	[0.21-0.75] unit decrease	Illumina [at least 567677] (imputed)	N
1277	chr7	90769350	90769351	rs77834246	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	7q21.13	NR	rs77834246-?	NR	2E-8				Illumina [7760689] (imputed)	N
1277	chr7	90781986	90781987	rs813379	25436638	Malinowski JR	2014-12-01	PLoS One	Genetic variants associated with serum thyroid stimulating hormone (TSH) levels in European Americans and African Americans from the eMERGE Network.	Serum thyroid-stimulating hormone levels	4,501 European ancestry individuals, 351 African American individuals	NA	7q21.13	CDK14	rs813379-G	0.06	5E-6	(EA)	0.1	[0.061-0.139] unit decrease	Illumina [up to 905285]	N
1277	chr7	90787192	90787193	rs2724356	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	7q21.13	NR	rs2724356-?	NR	5E-6				Affymetrix [NR]	N
1278	chr7	90848217	90848218	rs12667582	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	7q21.13	FZD1	rs12667582-?	NR	6E-30		1.1844132	NR	Affymetrix [9154080] (imputed)	N
1278	chr7	90851932	90851933	rs142385643	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	7q21.13	CDK14	rs142385643-G	0.0127224156999841	1E-6	(F_Desulfovibrionaceae_HB)	1.2182	[0.73-1.71] unit decrease	Illumina [7711310] (imputed)	N
1278	chr7	90860739	90860740	rs6978037	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7q21.13	NR	rs6978037-T	0.0122	5E-9	(HMOX1)	0.02621	NR unit increase	Illumina [1671387] (imputed)	N
1278	chr7	90867229	90867230	rs80030895	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	7q21.13		rs80030895-?	NR	1E-46				NR [~ 8900000] (imputed)	N
1278	chr7	90905040	90905041	rs10252923	31735061	Liu X	2019-11-16	Aust N Z J Psychiatry	Wnt receptor gene FZD1 was associated with schizophrenia in genome-wide SNP analysis of the Australian Schizophrenia Research Bank cohort.	Schizophrenia	429 European ancestry cases, 255 European ancestry controls	NR	7q21.13	FZD1	rs10252923-A	0.29	2E-6		1.82	[1.42-2.33]	Illumina [6473404] (imputed)	N
1278	chr7	90913498	90913499	rs1366883	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	7q21.13		rs1366883-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1278	chr7	90915353	90915354	rs2888830	23259602	Wang X	2012-12-21	BMC Oral Health	Genome-wide association scan of dental caries in the permanent dentition.	Dental caries	1,483 European ancestry comparatively younger individuals, 5,960 European ancestry comparatively older individuals	NA	7q21.13	LOC644727, FZD1, HOXA10	rs2888830-?	NR	7E-6	(Comparatively Older)			Affymetrix, Illumina [~ 1400000] (imputed)	N
1278	chr7	90915353	90915354	rs2888830	23259602	Wang X	2012-12-21	BMC Oral Health	Genome-wide association scan of dental caries in the permanent dentition.	Dental caries	1,483 European ancestry comparatively younger individuals, 5,960 European ancestry comparatively older individuals	NA	7q21.13	LOC644727, FZD1, HOXA10	rs2888830-?	NR	4E-6				Affymetrix, Illumina [~ 1400000] (imputed)	N
1278	chr7	90917709	90917710	rs77162945	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	7q21.13		rs77162945-?	NR	4E-12				NR [~ 8900000] (imputed)	N
1278	chr7	90944267	90944268	rs1429524	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Ejection fraction in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	7q21.13	NR	rs1429524-?	NR	2E-6				Affymetrix [5486770] (imputed)	N
1279	chr7	90978615	90978616	rs74426341	34124712	Sherva R	2021-02-28	Explor Med	Genome-wide association study of phenotypes measuring progression from first cocaine or opioid use to dependence reveals novel risk genes.	Cocaine dependence (time to event)	3,554 African American cases, 478 African American controls, 2,712 European ancestry cases, 915 European ancestry controls	572 African American cases, 416 African American controls, 759 European ancestry cases, 1,620 European ancestry controls	7q21.13	LOC105375392	rs74426341-C	0.04	3E-7		1.37	[NR]	Illumina [NR] (imputed)	N
1279	chr7	90983463	90983464	rs73404786	34124712	Sherva R	2021-02-28	Explor Med	Genome-wide association study of phenotypes measuring progression from first cocaine or opioid use to dependence reveals novel risk genes.	Cocaine dependence (time to event)	3,554 African American cases, 478 African American controls, 2,712 European ancestry cases, 915 European ancestry controls	572 African American cases, 416 African American controls, 759 European ancestry cases, 1,620 European ancestry controls	7q21.13	LOC105375392	rs73404786-A	NR	2E-7		1.38	NR	Illumina [NR] (imputed)	N
1279	chr7	91077683	91077684	rs62470182	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	7q21.13	NR	rs62470182-A	0.438795	2E-10		0.0196469	[0.014-0.026] unit decrease	NR [19129689] (imputed)	N
1280	chr7	91119311	91119312	rs73708431	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 6, height of vermillion lower lip)	2,187 European ancestry individuals	NA	7q21.13	NR	rs73708431-G	0.006648	1E-6		0.8936	[0.53-1.26] unit increase	Illumina [10677593] (imputed)	N
1280	chr7	91167601	91167602	rs17691129	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Cardio-cerebrovascular disease in diabetes mellitus	497 Korean ancestry cases, 4,815 Korean ancestry controls	NA	7q21.2		rs17691129-G	0.08619	4E-6		1.639	[1.33-2.02]	Affymetrix [7975321] (imputed)	N
1280	chr7	91185814	91185815	rs142267843	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in hypertension	398 Korean ancestry cases, 15,909 Korean ancestry controls	NA	7q21.2		rs142267843-T	0.01118	2E-6		2.749	[1.808-4.18]	Affymetrix [7975321] (imputed)	N
1280	chr7	91185814	91185815	rs142267843	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in dyslipidemia	295 Korean ancestry cases, 20,474 Korean ancestry controls	NA	7q21.2		rs142267843-T	0.01118	1E-7		3.294	[2.12-5.118]	Affymetrix [7975321] (imputed)	N
1280	chr7	91188627	91188628	rs2710949	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Cerebrospinal fluid t-tau levels in mild cognitive impairment	581 European ancestry cases	NA	7q21.2	NIPA2P1, MTERF, AKAP9	rs2710949-A	0.44	5E-6		0.34	[0.2-0.48] unit increase	Illumina [8449920] (imputed)	N
1280	chr7	91188627	91188628	rs2710949	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Cerebrospinal fluid p-tau levels in mild cognitive impairment	581 European ancestry mild cognitive impairment cases	NA	7q21.2	MTERF, AKAP9, NIPA2P1	rs2710949-A	0.44	3E-7		0.37	[0.23-0.51] unit increase	Illumina [8446615] (imputed)	N
1280	chr7	91190423	91190424	rs2710956	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	7q21.2	MTERF1	rs2710956-G	0.4505	6E-9		1.046	NR	Affymetrix [9154080] (imputed)	N
1280	chr7	91191389	91191390	rs1548881	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	7q21.2		rs1548881-?	NR	1E-11				NR [~ 8900000] (imputed)	N
1281	chr7	91240296	91240297	rs2540552	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	7q21.2	NR	rs2540552-C	0.58104074197861	8E-6	(IGP25)	0.1381	[0.078-0.199] unit increase	Illumina [~ 2500000] (imputed)	N
1281	chr7	91268940	91268942	rs560276033	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	7q21.2	FZD1, MTERF	rs560276033-GTA		4E-6		0.472	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1281	chr7	91268940	91268942	rs560276033	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	7q21.2	FZD1, MTERF	rs560276033-GTA		2E-9		0.429	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1281	chr7	91272343	91272344	rs1476442	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	7q21.2	MTERF	rs1476442-C	0.221	3E-6	(LDL )	0.02	[NR] mg/dL increase	Illumina [899892]	N
1281	chr7	91281408	91281409	rs76841737	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	7q21.2	NR	rs76841737-G	0.103	3E-8		0.02314881	[0.015-0.031] unit decrease	NR [~ 10000000] (imputed)	N
1281	chr7	91285427	91285428	rs12668101	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	7q21.2	NR	rs12668101-A	0.103	1E-9		0.0109737	[0.0074-0.0145] unit decrease	NR [9732723] (imputed)	N
1283	chr7	91503227	91503228	rs10266424	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	7q21.2	MTERF1	rs10266424-C		3E-8		0.012	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
1283	chr7	91552015	91552016	rs757040	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	7q21.2		rs757040-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1283	chr7	91583132	91583133	rs56898654	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	7q21.2	AKAP9	rs56898654-C	0.609039	3E-12		0.016040068	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1284	chr7	91630619	91630620	rs6964587	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	7q21.2		rs6964587-T	NR	3E-12		1.04	[1.03-1.05]	Affymetrix, Illumina [NR] (imputed)	N
1284	chr7	91630619	91630620	rs6964587	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	7q21.2	AKAP9	rs6964587-T	0.39	9E-11	(EA)	1.03	[1.02-1.05] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
1284	chr7	91630619	91630620	rs6964587	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	46,785 European ancestry cases, 42,892 European ancestry controls	NA	7q21.2	NR	rs6964587-T	0.39	1E-6		1.05	[1.03-1.07]	Affymetrix, Illumina [~ 14000000] (imputed)	N
1284	chr7	91630619	91630620	rs6964587	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	15,748 European ancestry cases, 18,084 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls	7q21.2	NR	rs6964587-T	0.39	5E-7		1.05	[1.03-1.07]	Affymetrix, Illumina [~ 11600000] (imputed)	N
1284	chr7	91652178	91652178	rs10644111	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	7q21.2	NR	rs10644111-AAAC	0.3903	3E-11	(EA)	0.0424	[0.03-0.055] unit increase	Illumina [~ 11800000] (imputed)	N
1284	chr7	91713046	91713047	rs76775274	30120083	Ferguson A	2018-08-14	EBioMedicine	Genome-Wide Association Study of Circadian Rhythmicity in 71,500 UK Biobank Participants and Polygenic Association with Mood Instability.	Disrupted circadian rhythm (low relative amplitude of rest-activity cycles)	at least 2,700 European ancestry cases, at least 68,300 European ancestry controls	NA	7q21.2	AKAP9	rs76775274-C	NR	2E-6		0.521	unit increase	Affymetrix [7969123] (imputed)	N
1284	chr7	91730590	91730591	rs149454736	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Hippocampal volume in Alzheimer's disease dementia	190 European ancestry Alzheimer's disease dementia cases	NA	7q21.2	AKAP9, MTERF, CYP51A1, LRRD1, KRIT1	rs149454736-T	0.03	2E-7		1.72	[1.11-2.33] unit increase	Illumina [8437147] (imputed)	N
1284	chr7	91731045	91731046	rs78138888	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	7q21.2	AKAP9	rs78138888-T	0.0721	1E-13		0.027	[0.02-0.034] unit decrease	Affymetrix [18391927] (imputed)	N
1284	chr7	91745092	91745094	rs149057881	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	7q21.2	CYP51A1	rs149057881-C	0.9335	3E-9		0.3144	[0.21-0.42] mmHg decrease	Affymetrix [NR] (imputed)	N
1285	chr7	91757772	91757773	rs12112262	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q21.2	NR	rs12112262-T	0.403473	1E-14				Affymetrix, Illumina [24558453] (imputed)	N
1285	chr7	91763622	91763623	rs2229188	25918517	Yashin AI	2015-04-13	Front Genet	Genetics of aging, health, and survival: dynamic regulation of human longevity related traits.	Lifespan	679 female individuals	432 male individuals	7q21.2	CYP51A1	rs2229188-?	0.087	2E-8	(females)	5.445	[NR] unit decrease	Affymetrix [429783]	N
1285	chr7	91764127	91764128	rs4279	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	7q21.2	CTB-161K23.1	rs4279-A	0.394728	4E-16		0.018902916	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1285	chr7	91764127	91764128	rs4279	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	7q21.2	CTB-161K23.1	rs4279-A	0.39471	6E-13		0.016746713	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1285	chr7	91772730	91772731	rs35417517	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	7q21.2	NR	rs35417517-C	0.392	8E-11	(EA)	0.0416	[0.029-0.054] unit increase	Illumina [~ 11800000] (imputed)	N
1285	chr7	91773212	91773213	rs6465351	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	7q21.2	LRRD1, CTB-161K23.1	rs6465351-C	0.477013	5E-19		0.01969891	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1285	chr7	91773212	91773213	rs6465351	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	7q21.2	NR	rs6465351-C	0.479688	2E-20		0.017089	[0.013-0.021] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
1285	chr7	91773212	91773213	rs6465351	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	7q21.2	NR	rs6465351-C	0.479746	8E-18		0.01585	[0.012-0.019] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
1285	chr7	91773358	91773359	rs7807490	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q21.2	NR	rs7807490-G	0.497961	2E-17				Affymetrix, Illumina [24653286] (imputed)	N
1285	chr7	91776381	91776381	rs371802875	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	7q21.2	LRRD1, CTB-161K23.1	rs371802875-CT	0.370747	4E-17		0.019610757	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1285	chr7	91779970	91779971	rs6465353	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	7q21.2		rs6465353-T	0.6061	3E-8	(conditional-joint)	0.008	[0.0053-0.0107] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1285	chr7	91805879	91805881	rs71107853	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	7q21.2		rs71107853-A	NR	1E-11		0.0128	[0.0091-0.0165] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
1285	chr7	91805879	91805881	rs71107853	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	7q21.2		rs71107853-A	NR	1E-12		0.0138	[0.01-0.018] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
1285	chr7	91863699	91863700	rs2027950	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Coffee consumption	335,909 European ancestry individuals	39,924 European ancestry individuals	7q21.2	KRIT1	rs2027950-C	0.4767	1E-7		0.0078	[0.0049-0.0107] unit increase	Affymetrix [~ 7740000] (imputed)	N
1285	chr7	91872872	91872872	rs35522438	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	7q21.2	NR	rs35522438-AT	0.3913	1E-9	(EA)	0.0389	[0.026-0.051] unit increase	Illumina [~ 11800000] (imputed)	N
1285	chr7	91876484	91876485	rs117704951	30120083	Ferguson A	2018-08-14	EBioMedicine	Genome-Wide Association Study of Circadian Rhythmicity in 71,500 UK Biobank Participants and Polygenic Association with Mood Instability.	Disrupted circadian rhythm (low relative amplitude of rest-activity cycles)	at least 2,700 European ancestry cases, at least 68,300 European ancestry controls	NA	7q21.2	ANKIB1	rs117704951-T	NR	2E-6		0.514	unit increase	Affymetrix [7969123] (imputed)	N
1286	chr7	91899116	91899117	rs2040498	32989287	Cuellar-Partida G	2020-09-28	Nat Hum Behav	Genome-wide association study identifies 48 common genetic variants associated with handedness.	Ambidextrousness	47,637 European ancestry cases, 1,422,823 European ancestry controls	NA	7q21.2	ANKIB1	rs2040498-A	0.6477	5E-10		1.0589402	[NR]	Illumina [12493443] (imputed)	N
1286	chr7	91901715	91901716	rs7796370	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7q21.2		rs7796370-?	NR	2E-15				NR [~ 8900000] (imputed)	N
1286	chr7	91973507	91973519	rs369328859	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	7q21.2	NR	rs369328859-G	0.3748	2E-8	(EA)	0.0369	[0.024-0.05] unit increase	Illumina [~ 11800000] (imputed)	N
1287	chr7	92029301	92029302	rs12740	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	7q21.2		rs12740-?	NR	2E-14				NR [~ 8900000] (imputed)	N
1287	chr7	92031339	92031340	rs112020434	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	7q21.2		rs112020434-C	0.02	1E-11		6.8	z score increase	Affymetrix [9061022] (imputed)	N
1287	chr7	92057319	92057320	rs10278819	32126890	Ter Hark SE	2020-03-04	J Psychopharmacol	A new genetic locus for antipsychotic-induced weight gain: A genome-wide study of first-episode psychosis patients using amisulpride (from the OPTiMiSE cohort).	Weight gain in amisulpride-treated first-episode psychosis	184 European ancestry individuals, 9 African ancestry individuals, 6 Hispanic/Latin American individuals, 3 South Asian ancestry individuals, 2 East Asian ancestry individuals, 2 individuals	NA	7q21.2	TMBIM7P	rs10278819-C	0.1023	2E-6		0.873	NR unit increase	Illumina [4533042] (imputed)	N
1287	chr7	92088856	92088857	rs10250187	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	7q21.2	AC007566.10	rs10250187-T	NR	1E-11		0.0321252	[0.023-0.041] unit increase	Affymetrix [323123] (imputed)	N
1287	chr7	92090793	92090794	rs576901188	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	7q21.2	AC007566.10	rs576901188-T	0.00253199999999998	9E-12		0.15480696	[0.11-0.2] unit decrease	Affymetrix [93095623] (imputed)	N
1287	chr7	92097610	92097611	rs13229255	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	7q21.2	AC007566.10	rs13229255-T	0.5072	3E-9		0.02161108	[0.015-0.029] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1287	chr7	92108839	92108840	rs150596337	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7q21.2		rs150596337-?	NR	5E-11				NR [~ 8900000] (imputed)	N
1287	chr7	92116066	92116067	rs147403447	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	7q21.2	AC007566.10	rs147403447-CT	0.9178	4E-9		0.0722	[0.048-0.096] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1287	chr7	92139473	92139474	rs38805	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	7q21.2	PEX1	rs38805-T	NR	8E-10		0.0264235	[0.018-0.035] unit increase	Affymetrix [321016] (imputed)	N
1287	chr7	92139790	92139791	rs38806	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	7q21.2	PEX1	rs38806-A	NR	5E-18		0.036999	[0.029-0.045] unit increase	Affymetrix [321016] (imputed)	N
1288	chr7	92176639	92176640	rs11772579	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	7q21.2	RBM48	rs11772579-A	NR	2E-10		0.0179887	[0.012-0.024] unit decrease	Affymetrix [321016] (imputed)	N
1288	chr7	92176639	92176640	rs11772579	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	7q21.2	RBM48	rs11772579-A	NR	1E-10		0.0198716	[0.014-0.026] unit decrease	Affymetrix [323123] (imputed)	N
1288	chr7	92185862	92185863	rs6942679	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	7q21.2	FAM133B	rs6942679-G	NR	3E-11		0.026705	[0.019-0.035] unit increase	Affymetrix [323123] (imputed)	N
1288	chr7	92203715	92203716	rs732330	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	7q21.2	FAM133B	rs732330-C	NR	1E-15		0.029513	[0.022-0.037] unit increase	Affymetrix [321016] (imputed)	N
1288	chr7	92203768	92203769	rs75904293	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	7q21.2	FAM133B	rs75904293-C	NR	7E-14		0.0395405	[0.029-0.05] unit increase	Affymetrix [321016] (imputed)	N
1288	chr7	92203768	92203769	rs75904293	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	7q21.2	FAM133B	rs75904293-C	NR	1E-9		0.0351217	[0.024-0.046] unit increase	Affymetrix [323123] (imputed)	N
1288	chr7	92208364	92208365	rs17760479	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	7q21.2	FAM133B	rs17760479-T	NR	8E-10		0.0322633	[0.022-0.043] unit decrease	Affymetrix [323123] (imputed)	N
1288	chr7	92217731	92217732	rs113797868	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	7q21.2	FAM133B	rs113797868-C	0.00687099999999996	8E-11		0.09341487	[0.065-0.122] unit decrease	Affymetrix [93095623] (imputed)	N
1288	chr7	92218898	92218899	rs74927662	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	7q21.2	FAM133B	rs74927662-C	0.0575870000000001	3E-10		0.03302367	[0.023-0.043] unit increase	Affymetrix [93095623] (imputed)	N
1288	chr7	92223517	92223518	rs12154498	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	7q21.2		rs12154498-C	NR	3E-9		0.0184	[0.012-0.024] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
1288	chr7	92223517	92223518	rs12154498	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	7q21.2		rs12154498-A	0.145	3E-18				Affymetrix [10369434] (imputed)	N
1288	chr7	92223517	92223518	rs12154498	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	7q21.2	FAM133B	rs12154498-A	NR	1E-19		0.0363522	[0.029-0.044] unit increase	Affymetrix [321016] (imputed)	N
1288	chr7	92223517	92223518	rs12154498	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	7q21.2		rs12154498-?	NR	1E-23		0.0285778	[0.023-0.034] unit decrease	Affymetrix [20259828] (imputed)	N
1288	chr7	92223517	92223518	rs12154498	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	7q21.2	FAM133B	rs12154498-A	0.146816	2E-9	(women)	0.0371021	[0.024-0.05] unit decrease	NR [17166351] (imputed)	N
1288	chr7	92223517	92223518	rs12154498	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	7q21.2	FAM133B	rs12154498-A	0.145998	4E-12		0.0324802	[0.023-0.042] unit decrease	NR [17166351] (imputed)	N
1288	chr7	92230161	92230162	rs740047	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	7q21.2		rs740047-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1288	chr7	92230282	92230283	rs74358828	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	7q21.2	CDK6	rs74358828-A	NR	2E-11		0.0425044	[0.03-0.055] unit increase	Affymetrix [323123] (imputed)	N
1288	chr7	92236163	92236164	rs8179	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	7q21.2		rs8179-T	0.208	6E-20				Affymetrix [10369434] (imputed)	N
1288	chr7	92236163	92236164	rs8179	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	7q21.2		rs8179-T	0.208	1E-22				Affymetrix [10369434] (imputed)	N
1288	chr7	92236163	92236164	rs8179	33385171	Hagg S	2020-12-31	Hum Genet	Deciphering the genetic and epidemiological landscape of mitochondrial DNA abundance.	Mitochondrial DNA levels	295,150 European ancestry individuals	NA	7q21.2	NR	rs8179-T	0.2207	3E-14		0.0241457	[0.018-0.03] unit decrease	Affymetrix [3505788] (imputed)	N
1288	chr7	92236163	92236164	rs8179	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	7q21.2		rs8179-?	NR	1E-37				NR [~ 8900000] (imputed)	N
1288	chr7	92236163	92236164	rs8179	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	7q21.2		rs8179-?	NR	1E-31				NR [~ 8900000] (imputed)	N
1288	chr7	92236163	92236164	rs8179	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count (basophil)	171,846 European ancestry individuals	NA	7q21.2	CDK6	rs8179-C	0.7916	8E-9		0.02495519	[0.016-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1288	chr7	92236163	92236164	rs8179	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	7q21.2	CDK6	rs8179-C	0.7915	1E-14		0.03412644	[0.025-0.043] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1288	chr7	92236163	92236164	rs8179	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	7q21.2	CDK6	rs8179-C	0.7915	2E-19		0.0398395	[0.031-0.049] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1288	chr7	92236163	92236164	rs8179	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	7q21.2	CDK6	rs8179-C	0.7915	1E-18		0.03901136	[0.03-0.048] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1288	chr7	92236163	92236164	rs8179	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	7q21.2	CDK6	rs8179-C	0.7915	1E-17		0.03788719	[0.029-0.047] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1288	chr7	92236163	92236164	rs8179	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	7q21.2	CDK6	rs8179-C	0.7917	1E-16		0.03692088	[0.028-0.046] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1288	chr7	92236163	92236164	rs8179	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	7q21.2	CDK6	rs8179-C	0.7916	3E-20		0.04091125	[0.032-0.05] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1288	chr7	92236828	92236829	rs4272	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	7q21.2	CDK6	rs4272-G	NR	4E-16		0.0309131	[0.023-0.038] unit increase	Affymetrix [321114] (imputed)	N
1288	chr7	92236828	92236829	rs4272	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	7q21.2	CDK6	rs4272-A	NR	5E-7		0.0834403	[0.043-0.124] unit decrease	Illumina [8380626] (imputed)	N
1288	chr7	92236828	92236829	rs4272	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	7q21.2	CDK6	rs4272-A	0.79	3E-7	(EA)	0.0968	[0.06-0.134] unit decrease	Illumina [8380626] (imputed)	N
1288	chr7	92236828	92236829	rs4272	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	7q21.2	CDK6	rs4272-G	0.2111	2E-28		0.0486948	[0.04-0.057] unit increase	Affymetrix [~ 2500000] (imputed)	N
1288	chr7	92236828	92236829	rs4272	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	7q21.2	CDK6	rs4272-G	0.2113	4E-9		0.02589751	[0.017-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
1288	chr7	92236828	92236829	rs4272	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	7q21.2	CDK6	rs4272-G	0.21	1E-8	(EA)	1.1	[1.07-1.14]	Affymetrix, Illumina [up to 9739303] (imputed)	N
1288	chr7	92236828	92236829	rs4272	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	7q21.2	CDK6	rs4272-G	0.19	5E-9		1.1	[1.06-1.13]	Affymetrix, Illumina [up to 9739303] (imputed)	N
1288	chr7	92237395	92237396	rs42031	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	SSC-A on granulocyte	3,112 Sardinian (founder/genetic isolate) ancestry individuals	NA	7q21.2		rs42031-T	0.25293	3E-11		0.2042	[0.14-0.26] unit decrease	Illumina [18030748] (imputed)	N
1288	chr7	92237425	92237426	rs42032	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	7q21.2		rs42032-A	NR	6E-10		0.0172	[0.012-0.023] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
1288	chr7	92237425	92237426	rs42032	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	7q21.2	CDK6	rs42032-A	NR	2E-26		0.0340953	[0.028-0.04] unit increase	Affymetrix [321016] (imputed)	N
1288	chr7	92237425	92237426	rs42032	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	7q21.2	CDK6	rs42032-A	NR	2E-29		0.0393482	[0.032-0.046] unit increase	Affymetrix [323123] (imputed)	N
1288	chr7	92237425	92237426	rs42032	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	7q21.2	NR	rs42032-A	NR	5E-9		0.0166	[0.011-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
1288	chr7	92237425	92237426	rs42032	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	7q21.2	CDK6	rs42032-A	0.262569	1E-23		0.02556017	[0.021-0.031] unit increase	Affymetrix [93095623] (imputed)	N
1288	chr7	92237425	92237426	rs42032	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	7q21.2		rs42032-?	NR	1E-26		0.024398	[0.02-0.029] unit increase	Affymetrix [20259828] (imputed)	N
1288	chr7	92237532	92237533	rs42033	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	7q21.2	CDK6	rs42033-T	0.208451	5E-65		0.081295446	[0.072-0.091] unit increase	Affymetrix [93095623] (imputed)	N
1288	chr7	92237532	92237533	rs42033	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	7q21.2	CDK6	rs42033-T	0.2084	2E-13		0.03245252	[0.024-0.041] unit increase	Affymetrix [~ 2500000] (imputed)	N
1288	chr7	92239143	92239144	rs42034	33310728	Ha E	2020-12-11	Ann Rheum Dis	Large-scale meta-analysis across East Asian and European populations updated genetic architecture and variant-driven biology of rheumatoid arthritis, identifying 11 novel susceptibility loci.	Rheumatoid arthritis	14,361 European ancestry cases, 43,923 European ancestry controls, 8,267 East Asian ancestry cases, 244,741 East Asian ancestry controls	NA	7q21.2		rs42034-A	NR	1E-8		0.92	[0.89-0.94]	NR [13810676] (imputed)	N
1288	chr7	92239143	92239144	rs42034	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	7q21.2	NR	rs42034-A		1E-9		0.27	unit increase	Affymetrix [at least 2696785] (imputed)	N
1288	chr7	92239143	92239144	rs42034	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	7q21.2	NR	rs42034-A		8E-8	(EA)	0.245	unit increase	Affymetrix [at least 2696785] (imputed)	N
1288	chr7	92239143	92239144	rs42034	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	7q21.2	NR	rs42034-A		2E-10		0.27	unit increase	Affymetrix [at least 2696785] (imputed)	N
1288	chr7	92239143	92239144	rs42034	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	7q21.2	NR	rs42034-A		2E-23		0.296	unit increase	Affymetrix [at least 2696785] (imputed)	N
1288	chr7	92239530	92239531	rs42035	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	7q21.2	CDC25A, ZNF589, NME6, SPINK8, FBXW12, PLXNB1, CCDC51, TMA7, ATRIP, TREX1, SHISA5, PFKFB4, UCN2, COL7A1, UQCRC1, TMEM89, SLC26A6, CELSR3, NCKIPSD, IP6K2, PRKAR2A, SLC25A20, ARIH2OS, ARIH2, P4HTM, WDR6, DALRD3, NDUFAF3, IMPDH2, QRICH1, QARS, USP19, LAMB2, CCDC71, KLHDC8B, C3orf84, CCDC36, RP11-3B7.1, C3orf62, USP4, GPX1, RHOA, TCTA, AMT, NICN1, DAG1, BSN, APEH, MST1, RNF123, AMIGO3, GMPPB, IP6K1, CDHR4, FAM212A, UBA7, TRAIP, CAMKV, MST1R, CTD-2330K9.3, MON1A, RBM6, RBM5, SEMA3F, GNAT1, GNAI2, LSMEM2, IFRD2, HYAL2, TUSC2, RASSF1, ZMYND10, NPRL2, CYB561D2, XXcos-LUCA11.5, TMEM115, CACNA2D2, CISH, MAPKAPK3, DOCK3	rs42035-?		1E-10				NR [7428630] (imputed)	N
1288	chr7	92239530	92239531	rs42035	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	7q21.2	CDK6	rs42035-?		4E-8				NR [7428630] (imputed)	N
1288	chr7	92241450	92241451	rs42036	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	7q21.2		rs42036-G	NR	1E-145		0.0422	[0.039-0.045] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1288	chr7	92243671	92243672	rs42377	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	7q21.2	CDK6	rs42377-A	0.298329	8E-48		0.03583793	[0.031-0.041] unit increase	Affymetrix [93095623] (imputed)	N
1288	chr7	92243671	92243672	rs42377	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	7q21.2	CDK6	rs42377-?	NR	2E-18		0.041758783	[0.032-0.051] unit increase	Illumina [27896057] (imputed)	N
1288	chr7	92243671	92243672	rs42377	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	7q21.2		rs42377-?	NR	1E-35				NR [~ 8900000] (imputed)	N
1288	chr7	92243671	92243672	rs42377	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	7q21.2	CDK6	rs42377-A	0.3172	1E-13		0.2575	[0.19-0.33] mmHg decrease	Affymetrix [NR] (imputed)	N
1288	chr7	92243671	92243672	rs42377	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	7q21.2	CDK6	rs42377-A	0.311	2E-9		0.0407	[0.027-0.054] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1288	chr7	92243671	92243672	rs42377	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	7q21.2	CDK6	rs42377-A	0.311	4E-18		0.0586	[0.045-0.072] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1288	chr7	92243718	92243719	rs42038	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls, 49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	7q21.2		rs42038-T	NR	2E-8		0.0473	[0.031-0.064] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1288	chr7	92243718	92243719	rs42038	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	7q21.2	CDK6	rs42038-T	0.298545	2E-31		0.028599055	[0.024-0.033] unit increase	Affymetrix [93095623] (imputed)	N
1288	chr7	92243718	92243719	rs42038	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	7q21.2	CDK6	rs42038-T	0.298551	1E-31		0.028792437	[0.024-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
1288	chr7	92243718	92243719	rs42038	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	7q21.2	NR	rs42038-T	0.298993	1E-9		0.0455247	[0.031-0.06] unit increase	Affymetrix [17914406] (imputed)	N
1288	chr7	92243718	92243719	rs42038	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	7q21.2		rs42038-?	NR	1E-25				NR [~ 8900000] (imputed)	N
1288	chr7	92244421	92244422	rs42039	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	7q21.2	CDK6	rs42039-T	0.2444	4E-106		0.0481	[0.044-0.052] unit increase	Affymetrix [18391927] (imputed)	N
1288	chr7	92244421	92244422	rs42039	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	7q21.2	CDK6	rs42039-T	0.244343	8E-11		0.017082771	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1288	chr7	92244421	92244422	rs42039	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	7q21.2	CDK6	rs42039-T	0.244162	2E-41		0.03751936	[0.032-0.043] unit increase	Affymetrix [93095623] (imputed)	N
1288	chr7	92244421	92244422	rs42039	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	7q21.2	NR	rs42039-T	0.245926	2E-10		0.013645	[0.0095-0.0178] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1288	chr7	92244421	92244422	rs42039	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7q21.2		rs42039-?	NR	3E-240				NR [~ 8900000] (imputed)	N
1288	chr7	92244421	92244422	rs42039	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Stroke	40,585 European ancestry cases, 406,111 European ancestry controls, 17,369 East Asian ancestry cases, 28,195 East Asian ancestry controls, 2,437 South Asian ancestry cases, 6,707 South Asian ancestry controls, 5,541 African American cases, 15,154 African American controls, 365 Asian ancestry cases, 333 Asian ancestry controls, 865 Latin American cases, 692 Latin American controls	NA	7q21.2	CDK6	rs42039-?	NR	7E-9				NR [~ 8000000] (imputed)	N
1288	chr7	92244421	92244422	rs42039	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Stroke	40,585 European ancestry cases, 406,111 European ancestry controls	NA	7q21.2	CDK6	rs42039-?	NR	2E-7				NR [~ 8000000] (imputed)	N
1288	chr7	92244421	92244422	rs42039	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Ischemic stroke	34,217 European ancestry cases, 406,111 European ancestry controls, 17,369 East Asian ancestry cases, 28,195 East Asian ancestry controls, 2,437 South Asian ancestry cases, 6,707 South Asian ancestry controls, 5,541 African American cases, 15,146 African American controls, 222 Asian ancestry cases, 333 Asian ancestry controls, 555 Latin American cases, 692 Latin American controls	NA	7q21.2	CDK6	rs42039-?	NR	7E-9				NR [~ 8000000] (imputed)	N
1288	chr7	92244421	92244422	rs42039	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Ischemic stroke	34,217 European ancestry cases, 406,111 European ancestry controls	NA	7q21.2	CDK6	rs42039-?	NR	2E-7				NR [~ 8000000] (imputed)	N
1288	chr7	92244421	92244422	rs42039	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	7q21.2	CDK6	rs42039-T	0.2481	3E-6		0.0485	[0.028-0.069] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1288	chr7	92244421	92244422	rs42039	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	7q21.2	CDK6	rs42039-T	0.266	4E-88		0.068	[0.062-0.074] unit increase	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
1288	chr7	92245926	92245927	rs42040	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	7q21.2		rs42040-T	NR	3E-8		0.0375	[0.024-0.051] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1288	chr7	92246743	92246744	rs42041	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	7q21.2	CDK6	rs42041-G	NR	4E-37		0.0452331	[0.038-0.052] unit increase	Affymetrix [323123] (imputed)	N
1288	chr7	92246743	92246744	rs42041	18794853	Raychaudhuri S	2008-09-14	Nat Genet	Common variants at CD40 and other loci confer risk of rheumatoid arthritis.	Rheumatoid arthritis	3,393 European ancestry cases, 12,460 European ancestry controls	3,929 European ancestry cases, 5,807 European ancestry controls	7q21.2	CDK6	rs42041-G	0.24	4E-6		1.11	[NR]	Affymetrix, Illumina [at least 315971] (imputed)	N
1288	chr7	92247111	92247112	rs42042	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	7q21.2	CDK6	rs42042-T	NR	1E-11		0.0190176	[0.014-0.025] unit increase	Affymetrix [321016] (imputed)	N
1288	chr7	92247111	92247112	rs42042	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	7q21.2	CDK6	rs42042-T	0.493929	1E-10		0.014273492	[0.0099-0.0186] unit decrease	Affymetrix [93095623] (imputed)	N
1288	chr7	92247111	92247112	rs42042	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	7q21.2	CDK6	rs42042-T	0.493943	1E-25		0.02371885	[0.019-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1288	chr7	92247111	92247112	rs42042	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	7q21.2	CDK6	rs42042-T	0.493973	1E-16		0.018417498	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1288	chr7	92247111	92247112	rs42042	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q21.2	NR	rs42042-T	0.567322	1E-20				Affymetrix, Illumina [24332387] (imputed)	N
1288	chr7	92247111	92247112	rs42042	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	7q21.2	NR	rs42042-T	0.496678	6E-20		0.016906	[0.013-0.021] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1288	chr7	92247111	92247112	rs42042	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	7q21.2		rs42042-?	NR	2E-17				NR [~ 8900000] (imputed)	N
1288	chr7	92247111	92247112	rs42042	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	7q21.2		rs42042-?	NR	9E-19				NR [~ 8900000] (imputed)	N
1288	chr7	92247332	92247333	rs42043	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	7q21.2	CDK6	rs42043-G	0.246659	4E-12		0.018255131	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1288	chr7	92247332	92247333	rs42043	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	7q21.2	CDK6	rs42043-G	0.246667	9E-37		0.033424534	[0.028-0.039] unit increase	Affymetrix [93095623] (imputed)	N
1288	chr7	92247332	92247333	rs42043	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q21.2	NR	rs42043-G	0.218251	2E-11				Affymetrix, Illumina [24588908] (imputed)	N
1288	chr7	92248075	92248076	rs42235	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	7q21.2		rs42235-T	NR	2E-38		0.0298	[0.025-0.034] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
1288	chr7	92248075	92248076	rs42235	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	7q21.2	CDK6	rs42235-C	0.701768	5E-27		0.0214646	[0.018-0.025] unit increase	NR [13737936] (imputed)	N
1288	chr7	92248075	92248076	rs42235	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	7q21.2	CDK6	rs42235-T	0.3154	8E-20	(EA)	0.0356	[0.028-0.043] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1288	chr7	92248075	92248076	rs42235	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	7q21.2	CDK6	rs42235-T	0.3154	2E-9	(EA,men)	0.0333	[0.022-0.044] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1288	chr7	92248075	92248076	rs42235	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	7q21.2	CDK6	rs42235-T	0.3154	2E-13	(EA, women)	0.0366	[0.027-0.046] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1288	chr7	92248075	92248076	rs42235	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	7q21.2	CDK6	rs42235-T	0.3	1E-28		1.28	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
1288	chr7	92248075	92248076	rs42235	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	7q21.2	CDK6	rs42235-T	0.31	8E-47		0.057	[NR] unit increase	Affymetrix, Illumina [2834208] (imputed)	N
1288	chr7	92250139	92250140	rs42044	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	7q21.2	NR	rs42044-?	NR	9E-21				Affymetrix [~ 8270000] (imputed)	N
1288	chr7	92250139	92250140	rs42044	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	7q21.2	NR	rs42044-?	NR	3E-41		0.33291	[0.28-0.38] unit increase	Affymetrix [7794483] (imputed)	N
1288	chr7	92250139	92250140	rs42044	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	7q21.2	NR	rs42044-?	NR	2E-16	(female)	0.22331	[0.17-0.28] unit increase	Affymetrix [7794483] (imputed)	N
1288	chr7	92250139	92250140	rs42044	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	7q21.2	NR	rs42044-?	NR	1E-27	(male)	0.42543	[0.35-0.5] unit increase	Affymetrix [7794483] (imputed)	N
1288	chr7	92250139	92250140	rs42044	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	7q21.2	CDK6	rs42044-G	0.2719	6E-28		0.04381826	[0.036-0.052] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1288	chr7	92251321	92251322	rs527582137	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	7q21.2	CDK6	rs527582137-G	0.280567	3E-19	(females)	0.03212	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1288	chr7	92251321	92251322	rs527582137	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	7q21.2	CDK6	rs527582137-G	0.280567	3E-11		0.02071	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1288	chr7	92251321	92251322	rs527582137	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	7q21.2	CDK6	rs527582137-G	0.280567	6E-17	(females)	0.0301	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1288	chr7	92251321	92251322	rs527582137	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	7q21.2	CDK6	rs527582137-G	0.280567	1E-11		0.02126	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1288	chr7	92253971	92253972	rs10269774	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	7q21.2		rs10269774-A	NR	1E-39		0.0262	[0.022-0.03] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1288	chr7	92253971	92253972	rs10269774	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	7q21.2		rs10269774-A	NR	2E-18		0.0193	[0.015-0.024] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1288	chr7	92253971	92253972	rs10269774	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	7q21.2	CDK6	rs10269774-A	NR	1E-19		0.0299204	[0.023-0.036] unit increase	Affymetrix [321114] (imputed)	N
1288	chr7	92253971	92253972	rs10269774	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in non-smokers	77,113 European ancestry women, 47,319 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	7q21.2	CDK6	rs10269774-A	0.331	5E-9		0.019	[0.013-0.025] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1288	chr7	92253971	92253972	rs10269774	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	7q21.2	CDK6	rs10269774-A	NR	2E-9				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1288	chr7	92253971	92253972	rs10269774	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	7q21.2	CDK6	rs10269774-A	0.333	3E-10		0.019	[0.013-0.025] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1288	chr7	92256904	92256905	rs2040494	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular volume	108,256 Japanese ancestry individuals	NA	7q21.2	NR	rs2040494-?	NR	3E-12		0.03759	[0.027-0.048] unit decrease novel	Illumina [6108953] (imputed)	N
1288	chr7	92256904	92256905	rs2040494	18391950	Lettre G	2008-04-06	Nat Genet	Identification of ten loci associated with height highlights new biological pathways in human growth.	Height	15,821 European ancestry individuals	Up to 17,801 European ancestry individuals	7q21.2	CDK6	rs2040494-C	0.5	4E-7		0.26	[0.36-0.65] cm decrease	Affymetrix, Illumina [2260683] (imputed)	N
1288	chr7	92257602	92257602	rs35489511	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	7q21.2	CDK6	rs35489511-GA	NR	2E-30		0.0364372	[0.03-0.043] unit increase	Affymetrix [321016] (imputed)	N
1288	chr7	92260259	92260260	rs2237572	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	7q21.2		rs2237572-T	0.804	3E-19		0.12	[-0.15--0.1] % decrease	Affymetrix [NR] (imputed)	N
1288	chr7	92260259	92260260	rs2237572	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	7q21.2	CDK6	rs2237572-C	0.195988	2E-27		0.030828571	[0.025-0.036] unit increase	Affymetrix [93095623] (imputed)	N
1288	chr7	92260259	92260260	rs2237572	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	7q21.2	CDK6	rs2237572-C	0.196008	3E-21		0.0260983	[0.021-0.031] unit increase	Affymetrix [93095623] (imputed)	N
1288	chr7	92263349	92263350	rs17688839	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	7q21.2		rs17688839-T	NR	2E-10		0.0181	[0.013-0.024] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1288	chr7	92263349	92263350	rs17688839	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	7q21.2	CDK6	rs17688839-T	NR	6E-22		0.0376194	[0.03-0.045] unit increase	Affymetrix [323123] (imputed)	N
1288	chr7	92263349	92263350	rs17688839	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	7q21.2	CDK6	rs17688839-T	0.193321	8E-21		0.04553424	[0.036-0.055] unit decrease	Affymetrix [93095623] (imputed)	N
1288	chr7	92264409	92264410	rs2282978	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	7q21.2	CDK6	rs2282978-C	0.325983	2E-11		0.018251	[0.013-0.024] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1288	chr7	92264409	92264410	rs2282978	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	7q21.2	CDK6	rs2282978-T	0.6456	2E-32		0.2988	[0.25-0.35] mmHg increase	Affymetrix [NR] (imputed)	N
1288	chr7	92264409	92264410	rs2282978	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Diastolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	7q21.2	CDK6	rs2282978-T	0.6482	2E-10		0.1578	[0.11-0.21] mmHg decrease	Affymetrix [NR] (imputed)	N
1288	chr7	92264409	92264410	rs2282978	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	7q21.2	CDK6	rs2282978-T		5E-11		0.264	unit increase	Affymetrix [at least 2696785] (imputed)	N
1288	chr7	92264409	92264410	rs2282978	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	7q21.2	CDK6	rs2282978-T		3E-8	(EA)	0.231	unit increase	Affymetrix [at least 2696785] (imputed)	N
1288	chr7	92264409	92264410	rs2282978	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	7q21.2	CDK6	rs2282978-T		2E-9		0.23	unit increase	Affymetrix [at least 2696785] (imputed)	N
1288	chr7	92264409	92264410	rs2282978	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	7q21.2	CDK6	rs2282978-T		6E-25		0.277	unit increase	Affymetrix [at least 2696785] (imputed)	N
1288	chr7	92264409	92264410	rs2282978	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Pulse pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	7q21.2	CDK6	rs2282978-T	0.6866	5E-10		0.0216	unit increase	Illumina [242296]	N
1288	chr7	92264409	92264410	rs2282978	19343178	Soranzo N	2009-04-03	PLoS Genet	Meta-analysis of genome-wide scans for human adult stature identifies novel Loci and associations with measures of skeletal frame size.	Height	12,611 European ancestry individuals	7,187 European ancestry individuals	7q21.2	CDK6	rs2282978-?	0.08	1E-8		0.06	[0.04-0.08] s.d. decrease	Illumina [229216]	N
1288	chr7	92264409	92264410	rs2282978	18391952	Weedon MN	2008-04-06	Nat Genet	Genome-wide association analysis identifies 20 loci that influence adult height.	Height	13,665 European ancestry individuals	16,482 European ancestry individuals	7q21.2	CDK6	rs2282978-C	0.33	8E-23		0.09	[0.06-0.12] s.d. increase (males)	Affymetrix [402951]	N
1288	chr7	92264409	92264410	rs2282978	18391951	Gudbjartsson DF	2008-04-06	Nat Genet	Many sequence variants affecting diversity of adult human height.	Height	30,968 European ancestry individuals	8,541 European ancestry individuals	7q21.2	CDK6, PEX1, GATAD1, ERVWE1	rs2282978-C	0.29	1E-8		5.8	[3.84-7.76] % s.d. increase	Affymetrix, Illumina [up to 304226]	N
1288	chr7	92264992	92264993	rs2282979	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	7q21.2	CDK6	rs2282979-C	0.268727	6E-41		0.034528237	[0.029-0.04] unit decrease	Affymetrix [93095623] (imputed)	N
1288	chr7	92273535	92273536	rs3731343	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	7q21.2		rs3731343-C	NR	1E-18		0.0161	[0.013-0.02] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
1288	chr7	92273535	92273536	rs3731343	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	7q21.2	CDK6	rs3731343-A	NR	2E-10		0.0196477	[0.014-0.026] unit decrease	Affymetrix [321114] (imputed)	N
1288	chr7	92273535	92273536	rs3731343	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	7q21.2	CDK6	rs3731343-A	NR	3E-22		0.0297824	[0.024-0.036] unit decrease	Affymetrix [323123] (imputed)	N
1288	chr7	92273577	92273578	rs10225965	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	7q21.2	CDK6	rs10225965-T	0.1952	5E-9		0.02615595	[0.017-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
1289	chr7	92277314	92277315	rs73232024	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	7q21.2		rs73232024-G	0.732	8E-16				Affymetrix [10369434] (imputed)	N
1289	chr7	92278115	92278116	rs56201652	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	7q21.2	CDK6	rs56201652-G	0.733	2E-12		1.05	[1.04-1.07]	Illumina [34740186] (imputed)	N
1289	chr7	92285122	92285123	rs11773884	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	7q21.2	CDK6	rs11773884-A	0.7	5E-9	(EA)	1.05	[1.03-1.07]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1289	chr7	92286979	92286980	rs17164683	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	7q21.2		rs17164683-T	NR	7E-15		0.0216	[0.016-0.027] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
1289	chr7	92288951	92288952	rs199808714	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	7q21.2	CDK6	rs199808714-A	0.054514	4E-10		0.032550763	[0.022-0.043] unit decrease	Affymetrix [93095623] (imputed)	N
1289	chr7	92292296	92292297	rs11768753	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	7q21.2	CDK6	rs11768753-A	NR	1E-9		0.0366954	[0.025-0.048] unit increase	Affymetrix [323123] (imputed)	N
1289	chr7	92300567	92300568	rs3731332	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	349,856 European ancestry individuals, 91,908 East Asian ancestry individuals	NA	7q21.2		rs3731332-T	NR	4E-21		0.0672	[0.053-0.081] unit decrease	Affymetrix, Illumina [20529536] (imputed)	N
1289	chr7	92301889	92301890	rs62466068	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	7q21.2	CDK6	rs62466068-C	NR	2E-12		0.0263034	[0.019-0.034] unit decrease	Affymetrix [321016] (imputed)	N
1289	chr7	92305444	92305445	rs75882441	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	7q21.2		rs75882441-A	0.288435	4E-10		0.0187353	[0.013-0.025] unit decrease	Illumina [13479924] (imputed)	N
1289	chr7	92326467	92326468	rs2282990	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	7q21.2	CDK6	rs2282990-T	0.072183	1E-11		0.029596077	[0.021-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
1289	chr7	92327764	92327765	rs3731321	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	7q21.2	CDK6	rs3731321-C	NR	6E-19		0.0364333	[0.028-0.044] unit decrease	Affymetrix [323123] (imputed)	N
1289	chr7	92327764	92327765	rs3731321	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	7q21.2	CDK6	rs3731321-T	0.831	3E-7		0.0495	[0.031-0.068] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1289	chr7	92332374	92332375	rs2079147	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	7q21.2	CDK6	rs2079147-A	NR	6E-17		0.0238026	[0.018-0.029] unit increase	Affymetrix [321016] (imputed)	N
1289	chr7	92348315	92348316	rs73406759	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Red blood cell count	108,794 Japanese ancestry individuals	NA	7q21.2	CDK6	rs73406759-?	NR	4E-8		0.03202	[0.021-0.043] unit increase novel	Illumina [6108953] (imputed)	N
1289	chr7	92370479	92370480	rs117892745	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	7q21.2	CDK6	rs117892745-C	NR	6E-14		0.0429374	[0.032-0.054] unit increase	Affymetrix [321016] (imputed)	N
1289	chr7	92370479	92370480	rs117892745	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	7q21.2	CDK6	rs117892745-C	NR	2E-11		0.041764	[0.03-0.054] unit increase	Affymetrix [323123] (imputed)	N
1289	chr7	92374090	92374091	rs73232041	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	7q21.2	CDK6	rs73232041-T	NR	6E-10		0.0285339	[0.02-0.038] unit increase	Affymetrix [321016] (imputed)	N
1290	chr7	92408328	92408329	rs8	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	7q21.2	CDK6	rs8-T	0.203179	9E-20		0.02645315	[0.021-0.032] unit increase	Affymetrix [93095623] (imputed)	N
1290	chr7	92408328	92408329	rs8	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	7q21.2	CDK6	rs8-T	0.203184	3E-19		0.026361564	[0.021-0.032] unit increase	Affymetrix [93095623] (imputed)	N
1290	chr7	92408328	92408329	rs8	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	7q21.2	CDK6	rs8-T	0.2112	8E-10		0.02765818	[0.019-0.036] unit increase	Affymetrix [~ 2500000] (imputed)	N
1290	chr7	92408369	92408370	rs445	35023831	Chong M	2022-01-13	Elife	GWAS and ExWAS of blood Mitochondrial DNA copy number identifies 71 loci and highlights a potential causal role in dementia.	Mitochondrial DNA copy number	395,718 British, Irish, Other White, South Asian, African ancestry individuals	NA	7q21.2	NR	rs445-T	0.184305	9E-9		0.0207	[0.014-0.028] unit increase	Affymetrix [23037915] (imputed)	N
1290	chr7	92408369	92408370	rs445	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	7q21.2		rs445-T	NR	9E-201		0.0823	[0.077-0.088] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1290	chr7	92408369	92408370	rs445	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	154,355 East Asian ancestry individuals	NA	7q21.2		rs445-T	0.31144	1E-103		0.0790925	[0.072-0.086] unit decrease	Illumina [13479091] (imputed)	N
1290	chr7	92408369	92408370	rs445	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	82,810 East Asian ancestry individuals	NA	7q21.2		rs445-T	0.313659	2E-58		0.0803419	[0.071-0.09] unit decrease	Illumina [13467171] (imputed)	N
1290	chr7	92408369	92408370	rs445	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	7q21.2		rs445-T	NR	7E-159		0.0847	[0.078-0.091] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
1290	chr7	92408369	92408370	rs445	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	95,119 East Asian ancestry individuals	NA	7q21.2		rs445-T	0.31251	6E-22		0.0455207	[0.036-0.055] unit decrease	Illumina [13471440] (imputed)	N
1290	chr7	92408369	92408370	rs445	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	7q21.2		rs445-T	NR	7E-111		0.0679	[0.062-0.074] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
1290	chr7	92408369	92408370	rs445	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	7q21.2		rs445-T	0.312258	2E-25		0.0225864	[0.018-0.027] unit decrease	Illumina [13479295] (imputed)	N
1290	chr7	92408369	92408370	rs445	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	7q21.2		rs445-T	NR	1E-17		0.0228	[0.018-0.028] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
1290	chr7	92408369	92408370	rs445	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	93,063 East Asian ancestry individuals	NA	7q21.2		rs445-T	0.313174	7E-22		0.0458288	[0.036-0.055] unit decrease	Illumina [13470073] (imputed)	N
1290	chr7	92408369	92408370	rs445	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	7q21.2		rs445-T	NR	7E-51		0.0382	[0.033-0.043] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
1290	chr7	92408369	92408370	rs445	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	7q21.2		rs445-T	NR	4E-15		0.0208	[0.016-0.026] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
1290	chr7	92408369	92408370	rs445	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	7q21.2		rs445-C	0.905	1E-16				Affymetrix [10369434] (imputed)	N
1290	chr7	92408369	92408370	rs445	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	7q21.2		rs445-C	0.905	6E-24				Affymetrix [10369434] (imputed)	N
1290	chr7	92408369	92408370	rs445	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	7q21.2		rs445-C	0.905	2E-81				Affymetrix [10369434] (imputed)	N
1290	chr7	92408369	92408370	rs445	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	7q21.2		rs445-C	0.905	2E-77				Affymetrix [10369434] (imputed)	N
1290	chr7	92408369	92408370	rs445	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	7q21.2		rs445-C	0.905	9E-28				Affymetrix [10369434] (imputed)	N
1290	chr7	92408369	92408370	rs445	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	7q21.2		rs445-C	0.905	8E-30				Affymetrix [10369434] (imputed)	N
1290	chr7	92408369	92408370	rs445	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	7q21.2		rs445-C	0.905	3E-80				Affymetrix [10369434] (imputed)	N
1290	chr7	92408369	92408370	rs445	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Aspartate aminotransferase levels	386,570 British ancestry individuals, 10,617 Asian or Asian British individuals, 7,426 Black or Black British individuals, 2,321 Chinese ancestry individuals	NA	7q21.2	CDK6	rs445-?	NR	7E-11		0.0023	[0.0013-0.0033] unit increase	Affymetrix [21347608] (imputed)	N
1290	chr7	92408369	92408370	rs445	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Alanine aminotransferase levels	387,859 British ancestry individuals, 10,635 Asian or Asian British individuals, 7,468 Black or Black British individuals, 2,338 Chinese ancestry individuals	NA	7q21.2	CDK6	rs445-?	NR	2E-26		0.0064	[0.005-0.0078] unit increase	Affymetrix [21347608] (imputed)	N
1290	chr7	92408369	92408370	rs445	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (neutrophil)	21,347 Hispanic or Latin American individuals	NA	7q21.2		rs445-T	0.8332	3E-6		0.0718	[0.042-0.102] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1290	chr7	92408369	92408370	rs445	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	21,347 Hispanic or Latin American individuals	NA	7q21.2		rs445-T	0.8361	5E-9		0.0788	[0.052-0.105] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1290	chr7	92408369	92408370	rs445	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	16,201 African American or Afro-Caribbean individuals	NA	7q21.2		rs445-T	0.8057	7E-6		0.0643	[0.036-0.092] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1290	chr7	92408369	92408370	rs445	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	7q21.2	CDK6	rs445-C	0.903801	2E-26		0.00689352	[0.0056-0.0082] unit decrease	Affymetrix [13995440] (imputed)	N
1290	chr7	92408369	92408370	rs445	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	7q21.2	CDK6	rs445-T	0.094	6E-14		7.51	z-score increase	Affymetrix [4312306] (imputed)	N
1290	chr7	92408369	92408370	rs445	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	7q21.2	NR	rs445-T	NR	3E-11		0.0267	[0.019-0.035] unit increase	Affymetrix [9000000] (imputed)	N
1290	chr7	92408369	92408370	rs445	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	7q21.2	NR	rs445-T	NR	4E-15		0.0316	[0.024-0.039] unit decrease	Affymetrix [9000000] (imputed)	N
1290	chr7	92408369	92408370	rs445	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	7q21.2	NR	rs445-T	NR	6E-19		0.0356	[0.028-0.043] unit increase	Affymetrix [9000000] (imputed)	N
1290	chr7	92408369	92408370	rs445	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Resistin levels	21,758 European ancestry individuals	9,173 individuals	7q21.2		rs445-T	0.1	1E-10		0.0829	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1290	chr7	92408369	92408370	rs445	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	SSC-A on monocyte	2,850 Sardinian (founder/genetic isolate) ancestry individuals	NA	7q21.2		rs445-T	0.19755	1E-9		0.2088	[0.14-0.28] unit increase	Illumina [17914520] (imputed)	N
1290	chr7	92408369	92408370	rs445	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	SSC-A on granulocyte	3,112 Sardinian (founder/genetic isolate) ancestry individuals	NA	7q21.2		rs445-T	0.1965	4E-40		0.4371	[0.37-0.5] unit increase	Illumina [18030748] (imputed)	N
1290	chr7	92408369	92408370	rs445	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	SSC-A on CD14+ monocyte	3,112 Sardinian (founder/genetic isolate) ancestry individuals	NA	7q21.2		rs445-T	0.19682	5E-12		0.229	[0.16-0.29] unit increase	Illumina [18030638] (imputed)	N
1290	chr7	92408369	92408370	rs445	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	FSC-A on granulocyte	2,850 Sardinian (founder/genetic isolate) ancestry individuals	NA	7q21.2		rs445-T	0.19755	3E-38		0.4475	[0.38-0.51] unit increase	Illumina [17914520] (imputed)	N
1290	chr7	92408369	92408370	rs445	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD86 on granulocyte	2,848 Sardinian (founder/genetic isolate) ancestry individuals	NA	7q21.2		rs445-T	0.19733	2E-9		0.2079	[0.14-0.28] unit increase	Illumina [17914327] (imputed)	N
1290	chr7	92408369	92408370	rs445	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD39 on granulocyte	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	7q21.2		rs445-T	0.19743	1E-9		0.2094	[0.14-0.28] unit increase	Illumina [17954496] (imputed)	N
1290	chr7	92408369	92408370	rs445	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD14- CD16- Absolute Count	3,629 Sardinian (founder/genetic isolate) ancestry individuals	NA	7q21.2		rs445-T	0.19426	6E-9		0.1786	[0.12-0.24] unit decrease	Illumina [18224179] (imputed)	N
1290	chr7	92408369	92408370	rs445	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD14+ CD16- monocyte Absolute Count	3,629 Sardinian (founder/genetic isolate) ancestry individuals	NA	7q21.2		rs445-T	0.19426	1E-9		0.1822	[0.12-0.24] unit decrease	Illumina [18224179] (imputed)	N
1290	chr7	92408369	92408370	rs445	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD127 on granulocyte	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	7q21.2		rs445-T	0.19743	4E-20		0.3156	[0.25-0.38] unit increase	Illumina [17954496] (imputed)	N
1290	chr7	92408369	92408370	rs445	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CCR2 on granulocyte	2,850 Sardinian (founder/genetic isolate) ancestry individuals	NA	7q21.2		rs445-T	0.19755	2E-16		0.2826	[0.22-0.35] unit increase	Illumina [17914520] (imputed)	N
1290	chr7	92408369	92408370	rs445	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	7q21.2	CDK6	rs445-T	0.095573	1E-160		0.102867186	[0.095-0.11] unit decrease	Affymetrix [93095623] (imputed)	N
1290	chr7	92408369	92408370	rs445	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	7q21.2	CDK6	rs445-T	0.095574	3E-44		0.053202204	[0.046-0.061] unit decrease	Affymetrix [93095623] (imputed)	N
1290	chr7	92408369	92408370	rs445	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	7q21.2	CDK6	rs445-T	0.095556	3E-182		0.109728284	[0.1-0.12] unit decrease	Affymetrix [93095623] (imputed)	N
1290	chr7	92408369	92408370	rs445	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	7q21.2	CDK6	rs445-T	0.095557	6E-136		0.09344363	[0.086-0.101] unit decrease	Affymetrix [93095623] (imputed)	N
1290	chr7	92408369	92408370	rs445	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	7q21.2	CDK6	rs445-T	0.09559	4E-10		0.023852088	[0.016-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
1290	chr7	92408369	92408370	rs445	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	7q21.2	CDK6	rs445-T	0.095585	2E-89		0.07652959	[0.069-0.084] unit increase	Affymetrix [93095623] (imputed)	N
1290	chr7	92408369	92408370	rs445	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	7q21.2	CDK6	rs445-T	0.0956	5E-49		0.0562337	[0.049-0.064] unit decrease	Affymetrix [93095623] (imputed)	N
1290	chr7	92408369	92408370	rs445	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	7q21.2	CDK6	rs445-T	0.095614	1E-54		0.05924341	[0.052-0.067] unit decrease	Affymetrix [93095623] (imputed)	N
1290	chr7	92408369	92408370	rs445	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	7q21.2	CDK6	rs445-T	0.095616	1E-141		0.09706362	[0.09-0.105] unit decrease	Affymetrix [93095623] (imputed)	N
1290	chr7	92408369	92408370	rs445	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q21.2	NR	rs445-T	0.145643	3E-310				Affymetrix, Illumina [24649327] (imputed)	N
1290	chr7	92408369	92408370	rs445	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	7q21.2	NR	rs445-T	0.099063	2E-205		0.094532	[0.088-0.101] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1290	chr7	92408369	92408370	rs445	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	151,807 East Asian ancestry individuals	NA	7q21.2	NR	rs445-C	0.686753	7E-93		0.079887	[0.072-0.088] SD units increase	Affymetrix, Illumina [16710636] (imputed)	N
1290	chr7	92408369	92408370	rs445	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	78,744 East Asian ancestry individuals	NA	7q21.2	NR	rs445-C	0.688788	8E-52		0.082048	[0.071-0.093] SD units increase	Affymetrix, Illumina [16289093] (imputed)	N
1290	chr7	92408369	92408370	rs445	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q21.2	NR	rs445-T	0.128316	1E-239				Affymetrix, Illumina [23114412] (imputed)	N
1290	chr7	92408369	92408370	rs445	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	7q21.2	NR	rs445-T	0.09833	1E-175		0.091294	[0.085-0.098] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
1290	chr7	92408369	92408370	rs445	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	88,929 East Asian ancestry individuals	NA	7q21.2	NR	rs445-C	0.688881	6E-22		0.049125	[0.039-0.059] SD units increase	Affymetrix, Illumina [16289044] (imputed)	N
1290	chr7	92408369	92408370	rs445	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q21.2	NR	rs445-T	0.131131	2E-219				Affymetrix, Illumina [23467995] (imputed)	N
1290	chr7	92408369	92408370	rs445	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	7q21.2	NR	rs445-T	0.098355	4E-196		0.09426	[0.088-0.1] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1290	chr7	92408369	92408370	rs445	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	86,890 East Asian ancestry individuals	NA	7q21.2	NR	rs445-C	0.688861	4E-24		0.052355	[0.042-0.062] SD units increase	Affymetrix, Illumina [16279099] (imputed)	N
1290	chr7	92408369	92408370	rs445	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q21.2	NR	rs445-T	0.131528	3E-78				Affymetrix, Illumina [19872809] (imputed)	N
1290	chr7	92408369	92408370	rs445	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	7q21.2	NR	rs445-T	0.096542	3E-56		0.053211	[0.047-0.06] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
1290	chr7	92408369	92408370	rs445	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q21.2	NR	rs445-T	0.129785	3E-106				Affymetrix, Illumina [19905671] (imputed)	N
1290	chr7	92408369	92408370	rs445	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	7q21.2	NR	rs445-T	0.096624	3E-105		0.075795	[0.069-0.083] SD unit decrease	Affymetrix, Illumina [50036608] (imputed)	N
1290	chr7	92408369	92408370	rs445	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	7q21.2	NR	rs445-C	0.905105	1E-8		0.0118382	[0.0075-0.0161] unit increase	Affymetrix [16578495] (imputed)	N
1290	chr7	92408369	92408370	rs445	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	7q21.2	NR	rs445-C	0.905396	5E-18		0.0116821	[0.0089-0.0145] unit increase	Affymetrix [16582909] (imputed)	N
1290	chr7	92408369	92408370	rs445	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	7q21.2	NR	rs445-C	0.905333	8E-12		0.013387	[0.0095-0.0172] unit increase	Affymetrix [16582621] (imputed)	N
1290	chr7	92408369	92408370	rs445	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	7q21.2	NR	rs445-C	0.905396	5E-15		0.0120555	[0.0089-0.0152] unit increase	Affymetrix [16582965] (imputed)	N
1290	chr7	92408369	92408370	rs445	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	7q21.2	NR	rs445-C	0.905333	7E-11		0.0140532	[0.0099-0.0182] unit increase	Affymetrix [16582614] (imputed)	N
1290	chr7	92408369	92408370	rs445	31869403	Kowalski MH	2019-12-23	PLoS Genet	Use of >100,000 NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium whole genome sequences improves imputation quality and detection of rare variant associations in admixed African and Hispanic/Latino populations.	White blood cell count	14,743 African American individuals, 6,762 African ancestry individuals, 21,034 Hispanic/Latino individuals	6,743 African American individuals	7q21.2	NR	rs445-T	NR	3E-8	(African)	0.069	NR unit decrease	Affymetrix, Illumina [up to 35800000] (imputed)	N
1290	chr7	92408369	92408370	rs445	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	7q21.2	CDK6	rs445-?	NR	6E-30		0.03493827	[0.029-0.041] unit decrease	Illumina [27896057] (imputed)	N
1290	chr7	92408369	92408370	rs445	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	White blood cell count	8,825 African American individuals, 18,251 Hispanic/Latino individuals, 543 Asian ancestry individuals, 606 Native American ancestry individuals, 383 individuals	NA	7q21.2	NR	rs445-?	NR	2E-11		0.0214173	[0.015-0.028] unit decrease	Illumina [30613845] (imputed)	N
1290	chr7	92408369	92408370	rs445	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	7q21.2		rs445-?	NR	6E-148				NR [~ 8900000] (imputed)	N
1290	chr7	92408369	92408370	rs445	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	7q21.2		rs445-?	NR	5E-51				NR [~ 8900000] (imputed)	N
1290	chr7	92408369	92408370	rs445	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	7q21.2	CDK6	rs445-T	0.1345	1E-8		0.0159	[0.01-0.021] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1290	chr7	92408369	92408370	rs445	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	White blood cell count	107,964 Japanese ancestry individuals	NA	7q21.2	CDK6	rs445-?	NR	2E-70		0.08142	[0.072-0.09] unit decrease novel	Illumina [6108953] (imputed)	N
1290	chr7	92408369	92408370	rs445	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Neutrophil count	62,076 Japanese ancestry individuals	NA	7q21.2	CDK6	rs445-?	NR	4E-46		0.08736	[0.075-0.099] unit decrease novel	Illumina [6108953] (imputed)	N
1290	chr7	92408369	92408370	rs445	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Monocyte count	62,076 Japanese ancestry individuals	NA	7q21.2	CDK6	rs445-?	NR	7E-18		0.05278	[0.041-0.065] unit decrease novel	Illumina [6108953] (imputed)	N
1290	chr7	92408369	92408370	rs445	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Eosinophil counts	62,076 Japanese ancestry individuals	NA	7q21.2	CDK6	rs445-?	NR	5E-17		0.05134	[0.039-0.063] unit decrease novel	Illumina [6108953] (imputed)	N
1290	chr7	92408369	92408370	rs445	28158719	Jain D	2017-02-01	Hum Mol Genet	Genome-wide association of white blood cell counts in Hispanic/Latino Americans: the Hispanic Community Health Study/Study of Latinos.	White blood cell count (neutrophil)	up to 11,809 Hispanic/Latino American individuals	up to 7,200 Hispanic/Latino American individuals	7q21.2	NR	rs445-C	0.83	9E-6		0.037	[0.021-0.053] unit increase	Illumina [27887661] (imputed)	N
1290	chr7	92408369	92408370	rs445	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count (basophil)	171,846 European ancestry individuals	NA	7q21.2	CDK6	rs445-T	0.0972	5E-31		0.06863311	[0.057-0.08] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1290	chr7	92408369	92408370	rs445	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	7q21.2	CDK6	rs445-T	0.0973	2E-65		0.1037255	[0.092-0.116] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1290	chr7	92408369	92408370	rs445	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	7q21.2	CDK6	rs445-T	0.0971	4E-64		0.1026473	[0.091-0.115] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1290	chr7	92408369	92408370	rs445	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	7q21.2	CDK6	rs445-T	0.0972	5E-30		0.06880302	[0.057-0.081] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1290	chr7	92408369	92408370	rs445	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	7q21.2	CDK6	rs445-T	0.0971	5E-60		0.09926111	[0.087-0.111] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1290	chr7	92408369	92408370	rs445	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	7q21.2	CDK6	rs445-T	0.0971	2E-12		0.04239009	[0.031-0.054] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1290	chr7	92408369	92408370	rs445	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	7q21.2	CDK6	rs445-T	0.0971	1E-58		0.09798081	[0.086-0.11] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1290	chr7	92408369	92408370	rs445	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	7q21.2	CDK6	rs445-T	0.0972	3E-73		0.1103045	[0.098-0.122] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1290	chr7	92408369	92408370	rs445	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	7q21.2	CDK6	rs445-T	0.0971	4E-59		0.09809461	[0.086-0.11] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1290	chr7	92408369	92408370	rs445	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	7q21.2	CDK6	rs445-T	0.0971	2E-27		0.06533509	[0.054-0.077] unit increase	Affymetrix [~ 2500000] (imputed)	N
1290	chr7	92408369	92408370	rs445	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	7q21.2	CDK6	rs445-T	0.0971	2E-65		0.1038414	[0.092-0.116] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1290	chr7	92408369	92408370	rs445	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	7q21.2	CDK6	rs445-T	0.0972	2E-18		0.05291338	[0.041-0.065] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1290	chr7	92408369	92408370	rs445	25096241	Keller MF	2014-08-05	Hum Mol Genet	Trans-ethnic meta-analysis of white blood cell phenotypes.	White blood cell count	16,843 Japanese ancestry individuals, 19,509 European ancestry individuals, 16,388 African American individuals	NA	7q21.2	CDK6	rs445-C	0.685	9E-11	(Japanese)	0.019	[0.013-0.025] unit increase	Illumina [NR] (imputed)	N
1290	chr7	92408369	92408370	rs445	25096241	Keller MF	2014-08-05	Hum Mol Genet	Trans-ethnic meta-analysis of white blood cell phenotypes.	Neutrophil count	9,802 Japanese ancestry individuals, 16,550 European ancestry individuals, 7,391 African American individuals	NA	7q21.2	CDK6	rs445-C	0.685	9E-6	(Japanese)	0.024	[0.014-0.034] unit increase	Illumina [NR] (imputed)	N
1290	chr7	92408369	92408370	rs445	21738479	Reiner AP	2011-06-30	PLoS Genet	Genome-wide association study of white blood cell count in 16,388 African Americans: the continental origins and genetic epidemiology network (COGENT).	White blood cell count	16,388 African American individuals	3,551 Hispanic individuals, 14,767 Japanese ancestry individuals, 19,509 European ancestry individuals	7q21.2	CDK6	rs445-T	0.19	4E-7		0.025	[0.02-0.04] liter decrease	Affymetrix, Illumina [2489215] (imputed)	N
1290	chr7	92408369	92408370	rs445	21738478	Okada Y	2011-06-30	PLoS Genet	Identification of nine novel loci associated with white blood cell subtypes in a Japanese population.	White blood cell types	8,794 Japanese ancestry individuals	5,998 Japanese ancestry individuals	7q21.2	CDK6	rs445-C	0.69	7E-10	(neutrophil count)	0.076	[0.06-0.10] unit increase	Illumina [2178645] (imputed)	N
1290	chr7	92408369	92408370	rs445	20139978	Kamatani Y	2010-02-07	Nat Genet	Genome-wide association study of hematological and biochemical traits in a Japanese population.	White blood cell count	14,677 Japanese ancestry individuals	NA	7q21.2	CDK6	rs445-T	0.32	2E-8		0.07	[0.045-0.095] unit decrease	Illumina [561583]	N
1290	chr7	92408454	92408455	rs144023540	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	7q21.2	CDK6	rs144023540-T	0.02051	1E-16		0.0678231	[0.052-0.084] unit decrease	Affymetrix [93095623] (imputed)	N
1290	chr7	92460674	92460675	rs3731267	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7q21.2		rs3731267-?	NR	7E-25				NR [~ 8900000] (imputed)	N
1290	chr7	92461099	92461100	rs3731265	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	7q21.2		rs3731265-C	0.994	2E-13				Affymetrix [10369434] (imputed)	N
1290	chr7	92461099	92461100	rs3731265	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	7q21.2		rs3731265-C	0.994	9E-11				Affymetrix [10369434] (imputed)	N
1290	chr7	92464651	92464659	rs145236316	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	7q21.2	CDK6	rs145236316-C	0.00791500000000001	6E-9		0.077490225	[0.051-0.104] unit decrease	Affymetrix [93095623] (imputed)	N
1290	chr7	92471517	92471518	rs10230506	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	7q21.2	AC002454.1	rs10230506-A	0.160482	2E-10		0.019213343	[0.013-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1290	chr7	92471517	92471518	rs10230506	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q21.2	NR	rs10230506-A	0.190658	5E-17				Affymetrix, Illumina [23472807] (imputed)	N
1290	chr7	92471517	92471518	rs10230506	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	7q21.2	NR	rs10230506-A	0.1609	3E-16		0.021153	[0.016-0.026] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1290	chr7	92491282	92491283	rs73407739	28207573	Backman JD	2017-04-01	Pharmacogenet Genomics	Genome-wide analysis of clopidogrel active metabolite levels identifies novel variants that influence antiplatelet response.	Clopidogrel active metabolite levels	513 Amish individuals	NA	7q21.2	LOC101927497	rs73407739-T	0.01	2E-7		16.83	[NR] unit increase	Affymetrix [7884700] (imputed)	N
1290	chr7	92506071	92506072	rs6950425	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	7q21.2	AC002454.1	rs6950425-C	0.039629	3E-10		0.03612207	[0.025-0.047] unit increase	Affymetrix [93095623] (imputed)	N
1290	chr7	92507627	92507628	rs75133308	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7q21.2	NR	rs75133308-C	0.0122	6E-9	(TTN)	1.206	NR unit increase	Illumina [1671387] (imputed)	N
1290	chr7	92507627	92507628	rs75133308	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7q21.2	NR	rs75133308-C	0.0122	3E-9	(AGT)	0.07204	NR unit increase	Illumina [1671387] (imputed)	N
1290	chr7	92531790	92531791	rs13229771	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	7q21.2	AC002454.1	rs13229771-C	NR	3E-8		0.0261303	[0.017-0.035] unit decrease	Affymetrix [323123] (imputed)	N
1291	chr7	92565747	92565748	rs116940641	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	7q21.2	NR	rs116940641-A	NR	4E-9		0.0391	[0.026-0.052] unit increase	Affymetrix [9000000] (imputed)	N
1291	chr7	92565747	92565748	rs116940641	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	7q21.2	NR	rs116940641-A	NR	3E-9		0.0394	[0.026-0.052] unit increase	Affymetrix [9000000] (imputed)	N
1291	chr7	92577759	92577760	rs6955627	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	7q21.2	NR	rs6955627-C	NR	4E-8		1.056	[1.04-1.08]	Affymetrix, Illumina [29235255] (imputed)	N
1291	chr7	92582155	92582156	rs117977586	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	7q21.2		rs117977586-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1291	chr7	92584728	92584728	rs202238552	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	7q21.2		rs202238552-TTTA	0.020145	3E-13		0.059749994	[0.044-0.076] unit increase	Affymetrix [93095623] (imputed)	N
1291	chr7	92600030	92600031	rs17164894	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	150,708 East Asian ancestry individuals	NA	7q21.2	NR	rs17164894-G	0.849095	8E-12		0.037364	[0.027-0.048] SD units decrease	Affymetrix, Illumina [16709798] (imputed)	N
1291	chr7	92600030	92600031	rs17164894	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	121,047 East Asian ancestry individuals	NA	7q21.2	NR	rs17164894-G	0.849007	1E-17		0.05215	[0.04-0.064] SD units increase	Affymetrix, Illumina [16286195] (imputed)	N
1291	chr7	92600030	92600031	rs17164894	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	119,629 East Asian ancestry individuals	NA	7q21.2	NR	rs17164894-G	0.849005	6E-15		0.047705	[0.036-0.06] SD units increase	Affymetrix, Illumina [16286228] (imputed)	N
1291	chr7	92609878	92609879	rs111641448	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	7q21.2		rs111641448-A	NR	1E-8		0.0346	[0.023-0.047] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
1291	chr7	92616517	92616518	rs1003827	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	7q21.2	NR	rs1003827-T	0.33762	3E-9		0.0192367	[0.013-0.026] unit increase	NR [19129689] (imputed)	N
1291	chr7	92622649	92622650	rs12704645	24939585	Fransen E	2014-06-18	Eur J Hum Genet	Genome-wide association analysis demonstrates the highly polygenic character of age-related hearing impairment.	Age-related hearing impairment	1,489 European ancestry individuals	NA	7q21.2	intergenic	rs12704645-?		8E-6	(PC2)	0.0557	[NR] unit increase	Illumina [4167292] (imputed)	N
1291	chr7	92623540	92623541	rs62466110	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7q21.2		rs62466110-?	NR	2E-25				NR [~ 8900000] (imputed)	N
1291	chr7	92624406	92624407	rs17164954	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	7q21.2		rs17164954-C	0.054887	6E-17		0.04073911	[0.031-0.05] unit increase	Affymetrix [93095623] (imputed)	N
1291	chr7	92624406	92624407	rs17164954	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	7q21.2		rs17164954-C	0.054937	3E-15		0.03881575	[0.029-0.048] unit decrease	Affymetrix [93095623] (imputed)	N
1291	chr7	92624406	92624407	rs17164954	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q21.2	NR	rs17164954-G	0.944175	1E-13				Affymetrix, Illumina [22063850] (imputed)	N
1291	chr7	92624406	92624407	rs17164954	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	7q21.2	NR	rs17164954-G	0.94532	1E-14		0.031969	[0.024-0.04] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
1291	chr7	92624406	92624407	rs17164954	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	7q21.2	NR	rs17164954-C	0.054611	4E-25		0.043953	[0.036-0.052] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
1291	chr7	92635972	92635973	rs17700466	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular volume	108,256 Japanese ancestry individuals	NA	7q21.2	NR	rs17700466-?	NR	1E-14		0.04628	[0.035-0.058] unit decrease novel	Illumina [6108953] (imputed)	N
1291	chr7	92635972	92635973	rs17700466	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin	108,054 Japanese ancestry individuals	NA	7q21.2	LOC101927497, SAMD9	rs17700466-?	NR	9E-12		0.04078	[0.029-0.052] unit decrease novel	Illumina [6108953] (imputed)	N
1291	chr7	92636039	92636040	rs10953082	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	7q21.2		rs10953082-T	0.156937	8E-25		0.0546844	[0.044-0.065] unit increase	Illumina [13476266] (imputed)	N
1291	chr7	92636039	92636040	rs10953082	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	7q21.2		rs10953082-T	0.156814	2E-15		0.0427195	[0.032-0.053] unit increase	Illumina [13476299] (imputed)	N
1291	chr7	92636039	92636040	rs10953082	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	7q21.2		rs10953082-T	0.010924	7E-16		0.08945576	[0.068-0.111] unit increase	Affymetrix [93095623] (imputed)	N
1291	chr7	92636039	92636040	rs10953082	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	7q21.2		rs10953082-T	0.010897	3E-18		0.0966704	[0.075-0.118] unit increase	Affymetrix [93095623] (imputed)	N
1291	chr7	92636039	92636040	rs10953082	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	7q21.2		rs10953082-T	0.010868	2E-13		0.098651	[0.079-0.119] unit increase	Affymetrix [93095623] (imputed)	N
1291	chr7	92636039	92636040	rs10953082	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	7q21.2		rs10953082-T	0.010869	4E-10		0.06845975	[0.047-0.09] unit increase	Affymetrix [93095623] (imputed)	N
1291	chr7	92638473	92638474	rs111430484	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	7q21.2		rs111430484-G	0.054781	8E-10		0.030039525	[0.02-0.04] unit increase	Affymetrix [93095623] (imputed)	N
1291	chr7	92638473	92638474	rs111430484	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	7q21.2		rs111430484-G	0.054791	4E-24		0.0523277	[0.043-0.061] unit decrease	Affymetrix [93095623] (imputed)	N
1291	chr7	92638473	92638474	rs111430484	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	7q21.2		rs111430484-G	0.0547800000000001	9E-24		0.049288165	[0.04-0.059] unit decrease	Affymetrix [93095623] (imputed)	N
1291	chr7	92639116	92639117	rs74298199	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	153,512 East Asian ancestry individuals	NA	7q21.2		rs74298199-G	0.150068	1E-10		0.0282017	[0.02-0.037] unit increase	Illumina [13479135] (imputed)	N
1291	chr7	92639116	92639117	rs74298199	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	7q21.2		rs74298199-G	NR	1E-40		0.0484	[0.041-0.055] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
1291	chr7	92639116	92639117	rs74298199	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	7q21.2		rs74298199-G	NR	2E-26		0.0388	[0.032-0.046] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
1291	chr7	92639116	92639117	rs74298199	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	7q21.2		rs74298199-G	0.055151	5E-17		0.04120621	[0.032-0.051] unit decrease	Affymetrix [93095623] (imputed)	N
1291	chr7	92639116	92639117	rs74298199	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q21.2	NR	rs74298199-G	0.0738122	9E-36				Affymetrix, Illumina [20825802] (imputed)	N
1291	chr7	92639116	92639117	rs74298199	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	7q21.2		rs74298199-?	NR	6E-11				NR [~ 8900000] (imputed)	N
1291	chr7	92654364	92654365	rs12671937	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	7q21.2	RN7SL7P	rs12671937-A	0.4798	5E-8		0.011045081	[0.0071-0.015] unit increase	Affymetrix [up to 18485882] (imputed)	N
1291	chr7	92654364	92654365	rs12671937	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	7q21.2	Intergenic	rs12671937-A	0.5252	1E-12	(MTAG)	0.0164	[0.012-0.021] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1291	chr7	92654364	92654365	rs12671937	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability (MTAG)	436,124 European ancestry individuals	NA	7q21.2	RN7SL7P	rs12671937-?	NR	2E-8		5.651	z score increase	Affymetrix, Illumina, Perlegen [7333576] (imputed)	N
1291	chr7	92654364	92654365	rs12671937	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (college completion)	280,007 European ancestry individuals	NA	7q21.2	NR	rs12671937-A	0.531	1E-10		1.0393949	[NR]	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
1291	chr7	92657033	92657034	rs10953083	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	7q21.2		rs10953083-A	0.4523	6E-19	(conditional-joint)	0.0126	[0.0099-0.0153] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1291	chr7	92657984	92657985	rs10215082	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	7q21.2		rs10215082-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1291	chr7	92657984	92657985	rs10215082	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	7q21.2		rs10215082-A	0.4661	7E-26		0.0149	[0.012-0.018] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1291	chr7	92657984	92657985	rs10215082	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	7q21.2	Intergenic	rs10215082-A	0.4661	2E-27	(MTAG)	0.0143	[0.012-0.017] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1291	chr7	92659159	92659160	rs2188177	32445792	Bani-Fatemi A	2020-05-20	Neurosci Lett	Genome-wide association study of aggression and violence in schizophrenia.	Physical aggression in schizophrenia	205 individuals	NA	7q21.2	NR	rs2188177-?	NR	8E-6		2.4207213	NR	Illumina [NR]	N
1291	chr7	92659159	92659160	rs2188177	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	7q21.2	Intergenic	rs2188177-C	0.4857	4E-8		0.0124	[0.0079-0.0169] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1291	chr7	92662326	92662327	rs12534506	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	7q21.2	Intergenic	rs12534506-A	0.4658	1E-11	(MTAG)	0.0122	[0.0087-0.0157] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1291	chr7	92662326	92662327	rs12534506	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	7q21.2	Intergenic	rs12534506-A	0.4653	5E-21	(MTAG)	0.0156	[0.012-0.019] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1291	chr7	92662326	92662327	rs12534506	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	7q21.2	NR	rs12534506-A	0.4739	3E-10		0.0143131595	NR unit decrease	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
1291	chr7	92662781	92662782	rs13310155	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	7q21.2		rs13310155-C	0.44	2E-12		7.07	z score increase	Affymetrix [9061022] (imputed)	N
1291	chr7	92662785	92662786	rs28882214	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	7q21.2		rs28882214-A	0.44	5E-10		6.22	z score increase	Affymetrix [9061022] (imputed)	N
1291	chr7	92662785	92662786	rs28882214	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	7q21.2	NR	rs28882214-A	0.4713	5E-10				NR [9056863] (imputed)	N
1292	chr7	92668331	92668332	rs2106166	29760442	Iglesias AI	2018-05-14	Nat Commun	Cross-ancestry genome-wide association analysis of corneal thickness strengthens link between complex and Mendelian eye diseases.	Central corneal thickness	17,803 European ancestry individuals, 8,107 Asian ancestry individuals	NA	7q21.2	SAMD9	rs2106166-A	0.5	5E-8		1.79	[1.16-2.42] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1292	chr7	92673153	92673154	rs6960056	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	7q21.2	Intergenic	rs6960056-G	0.5608	4E-8		0.0108	[0.0069-0.0147] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1292	chr7	92678901	92678902	rs4729068	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	7q21.2	SAMD9	rs4729068-G	0.4229	2E-12		0.014328426	[0.01-0.018] unit increase	Affymetrix [up to 18485882] (imputed)	N
1292	chr7	92681442	92681443	rs2188179	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	7q21.2		rs2188179-A	0.4664	3E-8		40.960983	z score increase	NR [6814003]	N
1292	chr7	92681442	92681443	rs2188179	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	7q21.2	SAMD9	rs2188179-?	NR	1E-9		0.012436936	[0.0084-0.0164] unit decrease	NR [7306098]	N
1292	chr7	92681442	92681443	rs2188179	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	7q21.2	NR	rs2188179-G	0.535	4E-8		0.00626407	[0.004-0.0085] unit decrease	NR [9732723] (imputed)	N
1292	chr7	92682358	92682359	rs11973616	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin	108,054 Japanese ancestry individuals	NA	7q21.2	NR	rs11973616-?	NR	3E-11		0.03878	[0.027-0.05] unit decrease novel	Illumina [6108953] (imputed)	N
1292	chr7	92682608	92682609	rs739385	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	7q21.2		rs739385-A	0.154542	8E-39		0.042913638	[0.036-0.049] unit decrease	Affymetrix [93095623] (imputed)	N
1292	chr7	92682608	92682609	rs739385	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	7q21.2		rs739385-A	0.154469	6E-30		0.03741397	[0.031-0.044] unit decrease	Affymetrix [93095623] (imputed)	N
1292	chr7	92682608	92682609	rs739385	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	7q21.2		rs739385-A	0.15459	2E-36		0.0379536	[0.032-0.044] unit decrease	Affymetrix [93095623] (imputed)	N
1292	chr7	92682608	92682609	rs739385	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	7q21.2		rs739385-A	0.154583	1E-20		0.030225081	[0.024-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
1292	chr7	92682608	92682609	rs739385	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q21.2	NR	rs739385-A	0.167494	2E-53				Affymetrix, Illumina [24246363] (imputed)	N
1292	chr7	92682608	92682609	rs739385	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	7q21.2	NR	rs739385-A	0.154804	3E-41		0.035713	[0.031-0.041] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1292	chr7	92682608	92682609	rs739385	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	7q21.2		rs739385-?	NR	7E-17				NR [~ 8900000] (imputed)	N
1292	chr7	92682608	92682609	rs739385	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	7q21.2		rs739385-?	NR	2E-22				NR [~ 8900000] (imputed)	N
1292	chr7	92682608	92682609	rs739385	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular volume	108,256 Japanese ancestry individuals	NA	7q21.2	LOC101927497, SAMD9	rs739385-?	NR	9E-16		0.04389	[0.033-0.055] unit decrease novel	Illumina [6108953] (imputed)	N
1292	chr7	92682608	92682609	rs739385	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	7q21.2	NR	rs739385-A	NR	1E-8		0.0309348	[0.02-0.042] unit increase	Affymetrix [16832071] (imputed)	N
1292	chr7	92682608	92682609	rs739385	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	7q21.2	intergenic	rs739385-A	0.1514	3E-18		0.0442441	[0.034-0.054] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1292	chr7	92682608	92682609	rs739385	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	7q21.2	intergenic	rs739385-A	0.1514	7E-12		0.03491591	[0.025-0.045] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1292	chr7	92687497	92687498	rs11980100	34624637	Zainul Abidin FN	2021-09-21	Neuroimage Clin	Glucose hypometabolism in the Auditory Pathway in Age Related Hearing Loss in the ADNI cohort.	Age related hearing loss-related regional glucose metabolism (Bilateral Heschl's gyrus)	228 European ancestry cases, 587 European ancestry controls	NA	7q21.2		rs11980100-?	NR	3E-6		0.308	[0.18-0.44] unit decrease	Illumina [5082878] (imputed)	N
1292	chr7	92705954	92705955	rs11763825	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	7q21.2	SAMD9L	rs11763825-?	NR	6E-6	(alpha ketoglutarate)	2.4882283	[1.41-3.57] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1292	chr7	92719038	92719039	rs10242567	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	7q21.2		rs10242567-A	0.10556	5E-12		0.025118606	[0.018-0.032] unit increase	Affymetrix [93095623] (imputed)	N
1292	chr7	92728527	92728528	rs10953090	32701715	Zhang Y	2020-07-21	J Bone Joint Surg Am	PPARGC1B Is Associated with Nontraumatic Osteonecrosis of the Femoral Head: A Genomewide Association Study on a Chart-Reviewed Cohort.	Nontraumatic osteonecrosis of the femoral head	118 European ancestry cases, 56,811 European ancestry controls	NA	7q21.2	SAMD9	rs10953090-A	0.092	2E-7		2.38	[1.72-3.30]	Illumina [3905175] (imputed)	N
1292	chr7	92764981	92764982	rs1133906	23740937	Martin JE	2013-06-10	Hum Mol Genet	A systemic sclerosis and systemic lupus erythematosus pan-meta-GWAS reveals new shared susceptibility loci.	Systemic lupus erythematosus and Systemic sclerosis	up to 2,761 European ancestry systemic sclerosis cases, 769 European ancestry systemic lupus erythematosus cases, 7,381 European ancestry controls	up to 1,578 European ancestry systemic sclerosis cases, 1,727 European ancestry systemic lupus erythematosus cases, 6,893 European ancestry controls	7q21.2	SAMD9L	rs1133906-?		2E-7	(lcSSc)	1.21	[NR]	Illumina [NR]	N
1292	chr7	92775018	92775019	rs28662	30971808	Kim JJ	2019-04-11	Pharmacogenomics J	Identification of SAMD9L as a susceptibility locus for intravenous immunoglobulin resistance in Kawasaki disease by genome-wide association analysis.	Response to intravenous immunoglobulin treatment in Kawasaki disease	101 Korean ancestry non-responder cases, 195 Korean ancestry responder cases	216 East Asian ancestry non-responder cases, 1,026 East Asian responder cases	7q21.2	SAMD9L	rs28662-A	0.022	5E-6		4.3	[2.29-8.06]	Illumina [721341]	N
1293	chr7	92857885	92857885	rs11428598	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	7q21.2	NR	rs11428598-?	NR	8E-6		0.0378	[0.021-0.054] unit decrease	Illumina [at least 560000] (imputed)	N
1294	chr7	92974661	92974662	rs144974794	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	7q21.3	NR	rs144974794-?	NR	6E-7		0.0485	[0.029-0.068] unit increase	Illumina [at least 560000] (imputed)	N
1294	chr7	93018016	93018017	rs73419340	31371054	Ruddy KJ	2019-07-29	Fertil Steril	Genetic predictors of chemotherapy-related amenorrhea in women with breast cancer.	Adverse response to chemotherapy (amenorrhea) in breast cancer	457 European ancestry amenorrheic cases, 711 European ancestry post-chemotherapy menses cases	NA	7q21.3	CCDC132	rs73419340-A	0.06	8E-7		0.49	[NR]	Illumina [5430816] (imputed)	N
1294	chr7	93055752	93055753	rs1801197	34050765	Zhang L	2021-05-29	J Clin Endocrinol Metab	Joint genome-wide association analyses identified 49 novel loci for age at natural menopause.	Age at menopause	181,219 European ancestry individuals, 43,861 East Asian ancestry individuals	NA	7q21.3		rs1801197-A	0.73	3E-10		0.09	unit decrease	Illumina [2093892] (imputed)	N
1294	chr7	93055752	93055753	rs1801197	34050765	Zhang L	2021-05-29	J Clin Endocrinol Metab	Joint genome-wide association analyses identified 49 novel loci for age at natural menopause.	Age at menopause	181,219 European ancestry individuals	NA	7q21.3		rs1801197-A	0.73	2E-9		0.09	unit decrease	Illumina [2398641] (imputed)	N
1295	chr7	93065078	93065079	rs143586968	32830257	Castellucci LC	2020-08-23	Clin Infect Dis	A Genome-Wide Association Study Identifies SERPINB10, CRLF3, STX7, LAMP3, IFNG-AS1 and KRT80 As Risk Loci Contributing to Cutaneous Leishmaniasis In Brazil.	Cutaneous leishmaniasis	2,066 Hispanic/Latino cases, 2,046 Hispanic/Latino controls	NR	7q21.3	CALCR	rs143586968-T		3E-6		1.159	[1.089-1.234]	Illumina [4498586] (imputed)	N
1295	chr7	93083587	93083588	rs2299247	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7q21.3	NR	rs2299247-T	NR	1E-9		0.023	unit increase	Affymetrix [at least 7091467] (imputed)	N
1295	chr7	93083587	93083588	rs2299247	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7q21.3	NR	rs2299247-T	0.513	2E-8	(EA)	0.024	unit increase	Affymetrix [at least 7091467] (imputed)	N
1295	chr7	93084664	93084665	rs1978117	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	7q21.3		rs1978117-?	NR	8E-11				NR [~ 8900000] (imputed)	N
1295	chr7	93088425	93088426	rs6976031	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7q21.3		rs6976031-?	NR	3E-11				NR [~ 8900000] (imputed)	N
1295	chr7	93089242	93089243	rs7777084	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	7q21.3	NA	rs7777084-A	0.462	2E-14		0.0131	[0.0098-0.0164] unit increase	NR [~ 27400000] (imputed)	N
1295	chr7	93095866	93095867	rs2237579	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	7q21.3		rs2237579-G	NR	2E-9		0.0115	[0.0078-0.0152] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1295	chr7	93095866	93095867	rs2237579	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	7q21.3	NR	rs2237579-T	NR	1E-7		0.015	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
1295	chr7	93095866	93095867	rs2237579	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	7q21.3	CALCR	rs2237579-G	0.45	1E-8		0.015	[0.0091-0.0209] unit increase	Illumina [6108953] (imputed)	N
1295	chr7	93096634	93096635	rs34696181	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	7q21.3	NR	rs34696181-?	NR	9E-10				Affymetrix [~ 8270000] (imputed)	N
1295	chr7	93096634	93096635	rs34696181	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	7q21.3		rs34696181-?	NR	3E-10				NR [~ 8900000] (imputed)	N
1295	chr7	93107092	93107093	rs2074120	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	7q21.3	CALCR	rs2074120-A	0.323	8E-9		1.04	[1.03-1.06]	Affymetrix, Illumina [11800000] (imputed)	N
1295	chr7	93112828	93112828	rs146844060	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	7q21.3	CALCR	rs146844060-TTA	NR	3E-11		0.0192328	[0.014-0.025] unit decrease	Affymetrix [321169] (imputed)	N
1295	chr7	93116298	93116299	rs2301680	31097437	Plotnikov D	2019-05-16	Br J Ophthalmol	Association between birth weight and refractive error in adulthood: a Mendelian randomisation study.	Birth weight	188,039 European ancestry individuals	NA	7q21.3	NR	rs2301680-A	0.5	5E-9		0.019	[0.013-0.025] z score decrease	Affymetrix [up to 10400000] (imputed)	N
1295	chr7	93118284	93118285	rs2214214	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	7q21.3	NR	rs2214214-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
1295	chr7	93118735	93118736	rs10262104	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	7q21.3	NR	rs10262104-C	0.4575	1E-8		0.022	[0.014-0.03] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1295	chr7	93140410	93140410	rs57221400	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	7q21.3	CALCR	rs57221400-CAT	NR	3E-8		0.016935	[0.011-0.023] unit increase	Affymetrix [321169] (imputed)	N
1295	chr7	93154059	93154060	rs6465387	34356046	Oluwafemi OO	2021-07-01	Genes (Basel)	Genome-Wide Association Studies of Conotruncal Heart Defects with Normally Related Great Vessels in the United States.	Conotruncal heart defects with normally related great vessels (without 22q.11.2 deletion syndrome)	294 European ancestry cases, 2,976 European ancestry controls, 641 trios	NA	7q21.3		rs6465387-?	NR	1E-6				Illumina [3311160] (imputed)	N
1296	chr7	93192709	93192710	rs1548457	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	7q21.3	CALCR	rs1548457-T	0.6048	2E-8	(EA)	0.0254	[0.017-0.034] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1296	chr7	93197731	93197732	rs9641123	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	7q21.3	NR	rs9641123-G	NR	3E-8		0.016	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
1296	chr7	93197731	93197732	rs9641123	28724990	Zillikens MC	2017-07-19	Nat Commun	Large meta-analysis of genome-wide association studies identifies five loci for lean body mass.	Lean body mass	37,450 European ancestry individuals, 842 Old Order Amish individuals	47,227 European ancestry individuals, 380 African American individuals, 8,034 Korean ancestry individuals, 7,834 Indian ancestry individuals	7q21.3	CALCR	rs9641123-?	0.43	4E-6		0.09	[0.051-0.129] unit increase	Affymetrix, Illumina [at least 1912063] (imputed)	N
1296	chr7	93197731	93197732	rs9641123	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	7q21.3	CALCR	rs9641123-C	0.4198	4E-7		0.024	[0.015-0.033] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1296	chr7	93197731	93197732	rs9641123	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	7q21.3	CALCR	rs9641123-?	NR	2E-8				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1296	chr7	93197731	93197732	rs9641123	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	7q21.3	CALCR	rs9641123-C	0.4198	4E-6	(men)	0.0288	[0.017-0.041] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1296	chr7	93197731	93197732	rs9641123	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	7q21.3	CALCR	rs9641123-C	0.4198	1E-8		0.0243	[0.016-0.033] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1296	chr7	93197731	93197732	rs9641123	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	7q21.3	CALCR	rs9641123-C	0.4166	4E-6	(women)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1296	chr7	93197731	93197732	rs9641123	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	7q21.3	CALCR	rs9641123-C	0.4166	3E-7	(men)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1296	chr7	93197731	93197732	rs9641123	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	7q21.3	CALCR	rs9641123-C	0.4166	2E-11				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1296	chr7	93197731	93197732	rs9641123	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in non-smokers	77,279 European ancestry women, 47,280 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	7q21.3	CALCR	rs9641123-C	0.4166	3E-8		0.024	[0.016-0.032] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1296	chr7	93197731	93197732	rs9641123	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	7q21.3	CALCR	rs9641123-C	0.4166	3E-7	(men)	0.029	[0.018-0.04] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1296	chr7	93197731	93197732	rs9641123	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	7q21.3	CALCR	rs9641123-C	0.4166	2E-6	(women)	0.0238	[0.014-0.034] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1296	chr7	93197731	93197732	rs9641123	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	7q21.3	CALCR	rs9641123-C	0.4166	1E-11		0.0258	[0.018-0.033] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1296	chr7	93197731	93197732	rs9641123	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	7q21.3	NR	rs9641123-C	0.428300976029584	2E-8		0.017202783	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1296	chr7	93197731	93197732	rs9641123	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	7q21.3	CALCR	rs9641123-C	0.429	5E-7	(EA)	0.019	[0.012-0.027] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1296	chr7	93197731	93197732	rs9641123	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	7q21.3	CALCR	rs9641123-C	0.429	2E-7	(EA, women)	0.025	[0.016-0.035] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1296	chr7	93197731	93197732	rs9641123	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	7q21.3	CALCR	rs9641123-C	0.427	2E-7		0.019	[0.012-0.027] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1296	chr7	93198257	93198258	rs6943127	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	7q21.3	CALCR	rs6943127-T	0.6014	1E-7		0.0341	[0.021-0.047] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1296	chr7	93198257	93198258	rs6943127	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference	1,254 whole genome sequenced European ancestry individuals, 3,074 whole genome sequenced individuals, 29,716 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 701 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,050 Mylopotamos (founder/genetic isolate) individuals, 883 Pomak (founder/genetic isolate) individuals	205,909 European ancestry individuals	7q21.3	CALCR	rs6943127-T	0.6045	4E-7		0.0407	[0.025-0.056] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1296	chr7	93199927	93199928	rs7786765	25760438	Anderson D	2015-03-11	PLoS One	First genome-wide association study in an Australian aboriginal population provides insights into genetic risk factors for body mass index and type 2 diabetes.	Body mass index	361 Martu Australian Aboriginal ancestry individuals	NA	7q21.3	CALCR	rs7786765-?	NR	9E-6		0.41	[0.23-0.59] unit increase	Illumina [1075436] (imputed)	N
1296	chr7	93207344	93207344	rs71107899	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Lean body mass	3,399 whole genome sequenced individuals, 11,801 European ancestry individuals	10,676 European ancestry individuals	7q21.3	CALCR	rs71107899-CAAACTCCACTTCAATTATG	0.071	6E-6		0.1071	[0.061-0.154] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1296	chr7	93216001	93216002	rs75001243	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	7q21.3	GNGT1	rs75001243-C	0.640117	5E-21		0.013733	[0.011-0.017] unit decrease	Affymetrix [12370749]	N
1296	chr7	93236509	93236510	rs2528531	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	7q21.3	NA	rs2528531-A	0.6498	9E-14		0.0133	[0.0098-0.0168] unit decrease	NR [~ 27400000] (imputed)	N
1296	chr7	93241639	93241640	rs7780752	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	7q21.3	GNGT1	rs7780752-T	0.6457	1E-7		0.037	[0.023-0.051] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1296	chr7	93241639	93241640	rs7780752	23202124	Horikoshi M	2012-12-02	Nat Genet	New loci associated with birth weight identify genetic links between intrauterine             growth and adult height and metabolism.	Birth weight	Up to 26,836 European ancestry individuals	Up to 42,519 European ancestry individuals	7q21.3	CALCR	rs7780752-T	0.64	2E-7		0.029	[0.017-0.041] gram decrease	Affymetrix, Illumina [~ 2700000] (imputed)	N
1296	chr7	93289222	93289223	rs563435986	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Treatment or medication use - codeine (UKB data field 20003_1140884444)	2,403 European ancestry cases, 453,873 European ancestry controls	NA	7q21.3		rs563435986-G	0.005476	1E-9		1.37	[0.93-1.81] unit increase	NR [11842647] (imputed)	N
1297	chr7	93349014	93349015	rs1858826	29278617	Sucheston-Campbell LE	2018-02-01	Pharmacogenet Genomics	Genome-wide meta-analyses identifies novel taxane-induced peripheral neuropathy-associated loci.	Taxane-induced peripheral neuropathy in breast cancer	204 European ancestry cases with >= grade 3 neuropathy, 1,919 European ancestry cases with < grade 3 neuropathy, 31 African American cases with >= grade 3 neuropathy, 108 African American cases with <grade 3 neuropathy	NA	7q21.3	GNGT1	rs1858826-G	0.1	1E-7		3.448276	[2.17-5.56]	Illumina [at least 521600] (imputed)	N
1297	chr7	93364925	93364926	rs2677049	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	7q21.3	NR	rs2677049-?	NR	2E-6				Affymetrix [NR]	N
1297	chr7	93387255	93387256	rs2677071	30621171	Coltell O	2019-01-04	Nutrients	Genome-Wide Association Study (GWAS) on Bilirubin Concentrations in Subjects with Metabolic Syndrome: Sex-Specific GWAS Analysis and Gene-Diet Interactions in a Mediterranean Population.	Serum bilirubin levels x Mediterranean diet adherence interaction in metabolic syndrome	257 European ancestry individuals with low adherence to Mediterranean diet, 161 European ancestry individuals with high adherence to Mediterranean diet	NA	7q21.3	intergenic	rs2677071-T	0.214	3E-6	(women)			Illumina [622468]	N
1298	chr7	93528437	93528438	rs117342394	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	7q21.3	NR	rs117342394-?	NR	5E-6		4.585	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1298	chr7	93538294	93538295	rs180273	22424883	Imboden M	2012-03-15	J Allergy Clin Immunol	Genome-wide association study of lung function decline in adults with and without asthma.	Pulmonary function decline	1,441 European ancestry asthma cases, 2,677 European ancestry controls	1,160 European ancestry asthma cases, 10,858 European ancestry controls	7q21.3	intergenic	rs180273-?	NR	7E-6	(FEV1/FVC decline in non-asthmatics)	0.1512	[0.085-0.217] unit increase	Illumina [~ 2500000] (imputed)	N
1298	chr7	93545776	93545777	rs180253	29497042	Verweij N	2018-03-01	Nat Commun	Genetic study links components of the autonomous nervous system to heart-rate profile during exercise.	Heart rate response to recovery post exercise (30 sec)	5,4137 European ancestry individuals, 1,744 Asian individuals, 1,445 African individuals, 468 admixed individuals, 1,024 individuals	NA	7q21.3	GNG11, GNGT1, TFPI2	rs180253-G	0.416147	2E-11		0.0423487	[0.03-0.055] unit decrease	Affymetrix [509255] (imputed)	N
1298	chr7	93545776	93545777	rs180253	29497042	Verweij N	2018-03-01	Nat Commun	Genetic study links components of the autonomous nervous system to heart-rate profile during exercise.	Heart rate response to recovery post exercise (20 sec)	5,4137 European ancestry individuals, 1,744 Asian individuals, 1,445 African individuals, 468 admixed individuals, 1,024 individuals	NA	7q21.3	GNG11, GNGT1, TFPI2	rs180253-G	0.416179	9E-11		0.0409329	[0.029-0.053] unit decrease	Affymetrix [509255] (imputed)	N
1298	chr7	93545776	93545777	rs180253	29497042	Verweij N	2018-03-01	Nat Commun	Genetic study links components of the autonomous nervous system to heart-rate profile during exercise.	Heart rate response to recovery post exercise (10 sec)	5,4137 European ancestry individuals, 1,744 Asian individuals, 1,445 African individuals, 468 admixed individuals, 1,024 individuals	NA	7q21.3	GNG11, GNGT1, TFPI2	rs180253-G	0.416049	7E-12		0.0439378	[0.032-0.056] unit decrease	Affymetrix [509255] (imputed)	N
1298	chr7	93546385	93546386	rs112724722	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	7q21.3	GNGT1, GNG11	rs112724722-G	0.998	2E-7		0.383754	[0.24-0.53] unit decrease	Illumina [13520550] (imputed)	N
1298	chr7	93549595	93549596	rs180242	23583979	den Hoed M	2013-04-14	Nat Genet	Identification of heart rate-associated loci and their effects on cardiac conduction and rhythm disorders.	Heart rate	85,787 European ancestry individuals, 6,568 Indian Asian ancestry indiviudals	88,823 European ancestry individuals	7q21.3	GNG11	rs180242-T	0.333	7E-12		0.316	[0.21-0.42] unit increase	Affymetrix, Illumina [2516789] (imputed)	N
1298	chr7	93550414	93550415	rs180239	29769521	Ramirez J	2018-05-16	Nat Commun	Thirty loci identified for heart rate response to exercise and recovery implicate autonomic nervous system.	Resting heart rate	67,062 European ancestry individuals	NA	7q21.3	GNGT1	rs180239-G	0.345655	2E-7		0.354556	[0.22-0.49] unit increase	Affymetrix [~ 7800000] (imputed)	N
1298	chr7	93550414	93550415	rs180239	27798624	Eppinga RN	2016-10-31	Nat Genet	Identification of genomic loci associated with resting heart rate and shared genetic predictors with all-cause mortality.	Resting heart rate	127,919 European ancestry individuals, 2,478 Asian ancestry individuals, 1,734 Black individuals, 684 Mixed ancestry individuals, 1,436 individuals	130,795 European ancestry individuals	7q21.3	GNGT1, GNG11	rs180239-C	0.35	5E-21		0.326	[0.26-0.39] unit decrease	Affymetrix [19941912] (imputed)	N
1298	chr7	93550446	93550447	rs180238	29497042	Verweij N	2018-03-01	Nat Commun	Genetic study links components of the autonomous nervous system to heart-rate profile during exercise.	Heart rate response to recovery post exercise (50 sec)	5,4137 European ancestry individuals, 1,744 Asian individuals, 1,445 African individuals, 468 admixed individuals, 1,024 individuals	NA	7q21.3	GNG11, GNGT1, TFPI2	rs180238-C	0.350073	4E-11		0.0402311	[0.028-0.052] unit decrease	Affymetrix [509255] (imputed)	N
1298	chr7	93550446	93550447	rs180238	29497042	Verweij N	2018-03-01	Nat Commun	Genetic study links components of the autonomous nervous system to heart-rate profile during exercise.	Heart rate response to recovery post exercise (40 sec)	5,4137 European ancestry individuals, 1,744 Asian individuals, 1,445 African individuals, 468 admixed individuals, 1,024 individuals	NA	7q21.3	GNG11, GNGT1, TFPI2	rs180238-C	0.350109	2E-12		0.0427427	[0.031-0.055] unit decrease	Affymetrix [509255] (imputed)	N
1298	chr7	93550446	93550447	rs180238	28613276	Nolte IM	2017-06-14	Nat Commun	Genetic loci associated with heart rate variability and their effects on cardiac disease risk.	Heart rate variability traits (RMSSD)	26,523 European ancestry individuals	20,429 European ancestry individuals, 11,234 Hispanic/Latino individuals, 6,895 African American individuals	7q21.3	GNG11	rs180238-C	0.333966	8E-19		0.034439	[0.026-0.043] unit decrease (EA)	Affymetrix, Illumina, Perlegen [at least 2135543] (imputed)	N
1298	chr7	93550446	93550447	rs180238	28613276	Nolte IM	2017-06-14	Nat Commun	Genetic loci associated with heart rate variability and their effects on cardiac disease risk.	Heart rate variability traits (RMSSD)	26,523 European ancestry individuals	20,429 European ancestry individuals, 11,234 Hispanic/Latino individuals, 6,895 African American individuals	7q21.3	GNG11	rs180238-C	0.333966	8E-16	(EA)	0.034439	[0.026-0.043] unit decrease	Affymetrix, Illumina, Perlegen [at least 2135543] (imputed)	N
1298	chr7	93551427	93551428	rs4262	28613276	Nolte IM	2017-06-14	Nat Commun	Genetic loci associated with heart rate variability and their effects on cardiac disease risk.	Heart rate variability traits (pvRSA/HF)	24,088 European ancestry individuals	9,377 European ancestry individuals, 404 Hispanic/Latino individuals, 1,901 African American individuals	7q21.3	GNG11	rs4262-C	0.3882	2E-11	(EA)	0.05018	[0.031-0.069] unit decrease	Affymetrix, Illumina, Perlegen [at least 2135543] (imputed)	N
1298	chr7	93551427	93551428	rs4262	28613276	Nolte IM	2017-06-14	Nat Commun	Genetic loci associated with heart rate variability and their effects on cardiac disease risk.	Heart rate variability traits (pvRSA/HF)	24,088 European ancestry individuals	9,377 European ancestry individuals, 404 Hispanic/Latino individuals, 1,901 African American individuals	7q21.3	GNG11	rs4262-C	0.3882	2E-11		0.05018	[0.031-0.069] unit decrease (EA)	Affymetrix, Illumina, Perlegen [at least 2135543] (imputed)	N
1298	chr7	93551427	93551428	rs4262	28613276	Nolte IM	2017-06-14	Nat Commun	Genetic loci associated with heart rate variability and their effects on cardiac disease risk.	Heart rate variability traits (SDNN)	27,850 European ancestry individuals	24,125 European ancestry individuals, 11,234 Hispanic/Latino individuals, 6,899 African American individuals	7q21.3	GNG11	rs4262-C	0.389763	5E-19		0.02771	[0.021-0.034] unit decrease (EA)	Affymetrix, Illumina, Perlegen [at least 2135543] (imputed)	N
1298	chr7	93551427	93551428	rs4262	28613276	Nolte IM	2017-06-14	Nat Commun	Genetic loci associated with heart rate variability and their effects on cardiac disease risk.	Heart rate variability traits (SDNN)	27,850 European ancestry individuals	24,125 European ancestry individuals, 11,234 Hispanic/Latino individuals, 6,899 African American individuals	7q21.3	GNG11	rs4262-C	0.389763	4E-17	(EA)	0.02771	[0.021-0.034] unit decrease	Affymetrix, Illumina, Perlegen [at least 2135543] (imputed)	N
1298	chr7	93562554	93562555	rs76542556	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	7q21.3	NR	rs76542556-T	NR	2E-6	(GEE model)	0.84971	[0.5-1.2] unit decrease	NR [NR] (imputed)	N
1298	chr7	93569421	93569422	rs7792995	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	7q21.3		rs7792995-A	0.4479	1E-11		0.09804425	[0.07-0.127] mmHg decrease	Affymetrix, Illumina [242866] (imputed)	N
1299	chr7	93598310	93598311	rs34911443	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris heterochromicity	329 South Asian ancestry individuals		7q21.3	RP11-341G5.1	rs34911443-T	0.084	6E-6		0.744	[0.43-1.06] unit increase	Illumina [640625] (imputed)	N
1299	chr7	93622246	93622247	rs10953105	30323354	Lee JY	2018-10-15	Sci Rep	BRCA1/2-negative, high-risk breast cancers (BRCAX) for Asian women: genetic susceptibility loci and their potential impacts.	BRCA1/2-negative high-risk breast cancer	1,469 Korean ancestry cases, 5,979 Korean ancestry controls	NA	7q21.3	BET1	rs10953105-G	0.88	1E-6		1.37	[1.21-1.56]	Affymetrix, Illumina [3378933] (imputed)	N
1299	chr7	93637624	93637625	rs10260824	25987655	Fernandez CA	2015-05-18	Blood	Genome-wide analysis links NFATC2 with asparaginase hypersensitivity.	Asparaginase hypersensitivity in acute lymphoblastic leukemia	3,126 child cases	182 child cases	7q21.3	BET1	rs10260824-C		5E-6		1.749		Affymetrix [NR]	N
1299	chr7	93691743	93691744	rs9918668	22773346	Edwards DR	2012-07-07	Age (Dordr)	Linkage and association of successful aging to the 6q25 region in large Amish kindreds.	Aging	263 Amish individuals aged 80 years or older	NA	7q21.3	COL1A2, BET1	rs9918668-?	0.43	6E-7				Affymetrix [630309]	N
1299	chr7	93705032	93705033	rs11975386	26824906	Rankinen T	2016-01-29	PLoS One	No Evidence of a Common DNA Variant Profile Specific to World Class Endurance Athletes.	World class endurance athleticism	60 Japanese ancestry world-class cases, 116 Japanese ancestry controls	at least 140 Sub-Saharan African ancestry cases, at least 275 Sub-Saharan African ancestry controls, at least 606 European ancestry cases, at least 978 European ancestry controls,  at least 688 Japanese ancestry controls, 78 cases, 101 controls.	7q21.3	BET1	rs11975386-A	0.19	3E-6	(Japanese)	3.14	[1.92-5.13]	Illumina [541179]	N
1299	chr7	93708082	93708083	rs7809370	30120083	Ferguson A	2018-08-14	EBioMedicine	Genome-Wide Association Study of Circadian Rhythmicity in 71,500 UK Biobank Participants and Polygenic Association with Mood Instability.	Relative amplitude of rest-activity cycles	77,440 European ancestry individuals	NA	7q21.3	Intergenic	rs7809370-?	NR	5E-6		0.001	unit increase	Affymetrix [7969123] (imputed)	N
1299	chr7	93713520	93713521	rs10487245	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	7q21.3	BET1	rs10487245-A	0.148	2E-6	(ALT/AST)	0.03	[NR] unit increase	Illumina [899892]	N
1300	chr7	93746456	93746457	rs375313288	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris color (b* coordinate)	329 South Asian ancestry individuals		7q21.3	intergenic	rs375313288-T	0.018	6E-6		1.633	[0.94-2.33] unit increase	Illumina [640625] (imputed)	N
1301	chr7	93879445	93879445	rs34592535	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 20)	2,187 European ancestry individuals	NA	7q21.3	NR	rs34592535-ATTTT	0.009862	2E-6		0.7359	[0.43-1.04] unit decrease	Illumina [10677593] (imputed)	N
1301	chr7	93880092	93880093	rs2110483	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	7q21.3	NR	rs2110483-?	NR	7E-6				Affymetrix [5486770] (imputed)	N
1301	chr7	93959752	93959753	rs35551616	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	7q21.3		rs35551616-?	NR	5E-12				NR [~ 8900000] (imputed)	N
1301	chr7	93959917	93959918	rs17166182	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	7q21.3	COL1A2	rs17166182-C	0.63511	2E-9		0.0113695	[0.0077-0.0151] unit increase	NR [13737936] (imputed)	N
1301	chr7	93967059	93967060	rs114302618	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	7q21.3	Intergenic	rs114302618-A	0.997	8E-7	(AA)	0.845	NR unit increase	Illumina [NR] (imputed)	N
1302	chr7	93981551	93981552	rs182858794	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	7q21.3	Intergenic	rs182858794-A	0.996	5E-7	(AA)	0.812	NR unit increase	Illumina [NR] (imputed)	N
1302	chr7	94000473	94000474	rs189936349	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	7q21.3	Intergenic	rs189936349-A	0.998	5E-8	(AA)	1.002	NR unit increase	Illumina [NR] (imputed)	N
1302	chr7	94008006	94008007	rs191979398	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	7q21.3	Intergenic	rs191979398-A	0.997	6E-8	(AA)	0.998	NR unit increase	Illumina [NR] (imputed)	N
1302	chr7	94009633	94009634	rs7792596	22449649	Loo SK	2012-02-28	J Am Acad Child Adolesc Psychiatry	Genome-wide association study of intelligence: additive effects of novel brain expressed genes.	Intelligence	656 European ancestry individuals from ADHD families	NA	7q21.3	COL1A2	rs7792596-?	NR	6E-7	(High intelligence)	4.13	[2.52-5.74] unit increase	Illumina [795637]	N
1302	chr7	94015729	94015730	rs191698899	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	7q21.3	Intergenic	rs191698899-A	0.997	6E-8	(AA)	0.994	NR unit increase	Illumina [NR] (imputed)	N
1302	chr7	94022117	94022118	rs3763467	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	7q21.3	COL1A2	rs3763467-T	0.8843	3E-18		0.0259	[0.02-0.032] unit increase	Affymetrix [18391927] (imputed)	N
1302	chr7	94037033	94037034	rs42517	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	7q21.3	NR	rs42517-G	0.246177	5E-8		0.0612231	[0.039-0.083] unit decrease	Affymetrix [21375087] (imputed)	N
1302	chr7	94047265	94047266	rs3736638	22610502	Kennedy RB	2012-05-19	Hum Genet	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IL-12p40)	Up to 512 European ancestry individuals, up to 199 African American individuals	NA	7q21.3	COL1A2	rs3736638-A		3E-7	(EA)			Illumina [NR]	N
1302	chr7	94049355	94049356	rs42528	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7q21.3		rs42528-?	NR	1E-14				NR [~ 8900000] (imputed)	N
1302	chr7	94053289	94053290	rs183110392	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	7q21.3	COL1A2	rs183110392-T	0.996	3E-6	(AA)	0.787	NR unit increase	Illumina [NR] (imputed)	N
1302	chr7	94053999	94054000	rs441051	17903307	Wilk JB	2007-09-19	BMC Med Genet	Framingham Heart Study genome-wide association: results for pulmonary function measures.	Mean forced vital capacity from 2 exams	Up to 1,222 individuals	NA	7q21.3	COL1A2	rs441051-?	NR	2E-6	(meanFVC)			Affymetrix [70897]	N
1302	chr7	94061403	94061404	rs115744676	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	7q21.3	COL1A2	rs115744676-?	NR	7E-9				Affymetrix [5486770] (imputed)	N
1302	chr7	94094152	94094153	rs9640621	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	7q21.3		rs9640621-?	NR	7E-8				NR [~ 8900000] (imputed)	N
1303	chr7	94113798	94113799	rs17268829	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	7q21.3		rs17268829-T	NR	4E-15		0.95	[0.94-0.96]	Affymetrix, Illumina [NR] (imputed)	N
1303	chr7	94113798	94113799	rs17268829	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	7q21.3	intergenic	rs17268829-C	0.28	5E-13	(EA)	1.05	[1.03-1.07] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
1303	chr7	94221215	94221216	rs78415215	33536081	Hu J	2021-02-03	Hum Genomics	Genetic variants are identified to increase risk of COVID-19 related mortality from UK Biobank data.	Mortality in COVID-19	292 European ancestry cases, 804 European ancestry controls	NA	7q21.3	NR	rs78415215-?	NR	1E-5				NR [18617478] (imputed)	N
1304	chr7	94267861	94267862	rs1357318	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	7q21.3	NR	rs1357318-?	NR	1E-8		1.06599	[1.04-1.09]	Affymetrix, Illumina [12447948] (imputed)	N
1304	chr7	94285090	94285090	rs111307654	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	7q21.3	NR	rs111307654-GAAA	0.7248	1E-12	(EA)	0.0497	[0.036-0.063] unit decrease	Illumina [~ 11800000] (imputed)	N
1304	chr7	94341758	94341759	rs76540488	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	7q21.3	NA	rs76540488-G	0.0988	1E-9	(Female)	1.0787487	[1.06-1.10]	Affymetrix, Illumina [NR] (imputed)	N
1305	chr7	94387342	94387343	rs10269006	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	7q21.3	NR	rs10269006-T	0.3178	5E-7	(EA)	0.0335	[0.021-0.046] unit increase	Illumina [~ 11800000] (imputed)	N
1305	chr7	94502463	94502464	rs777583985	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	7q21.3	NR	rs777583985-?	NR	2E-6		0.0077314	[0.0045-0.0109] unit increase	Affymetrix [805426] (imputed)	N
1307	chr7	94754984	94754985	rs9649194	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	7q21.3	Intergenic	rs9649194-T	0.5546	1E-10	(MTAG)	0.0116	[0.0081-0.0151] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1307	chr7	94754984	94754985	rs9649194	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	7q21.3	Intergenic	rs9649194-T	0.5545	2E-8	(MTAG)	0.0094	[0.0061-0.0127] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1308	chr7	94767405	94767406	rs192462116	26265699	Karol SE	2015-08-11	Blood	Genetics of glucocorticoid-associated osteonecrosis in children with acute lymphoblastic leukemia.	Glucocorticoid-induced osteonecrosis (age 10 years and older)	230 osteonecrosis cases, 1,238 treated controls	NA	7q21.3	PPP1R9A	rs192462116-?	NR	3E-6				Affymetrix, Illumina [NR] (imputed)	N
1308	chr7	94768271	94768272	rs10953137	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	7q21.3	Intergenic	rs10953137-G	0.4561	6E-10		0.0121	[0.0082-0.016] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1309	chr7	94903476	94903477	rs61749905	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	7q21.3	PPP1R9A	rs61749905-A	0.013	6E-6		0.1606	[0.091-0.23] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1309	chr7	94903476	94903477	rs61749905	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	7q21.3	PPP1R9A	rs61749905-A	0.013	6E-6		0.1606	[0.091-0.23] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1309	chr7	94930390	94930391	rs854555	18615156	Liu C	2008-07-10	Mol Med	Genome-wide association scan identifies candidate polymorphisms associated with differential response to anti-TNF treatment in rheumatoid arthritis.	Response to TNF antagonist treatment	89 European ancestry cases	NA	7q21.3	PON1	rs854555-A	0.34	2E-6				Illumina [283348]	N
1309	chr7	94935198	94935199	rs3917549	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	7q21.3	PON1	rs3917549-C	0.195	7E-24	(Ragulator complex protein LAMTOR3, LAMTOR3.12490.92.3)	0.31	[0.25-0.37] unit increase	Affymetrix [10572788] (imputed)	N
1309	chr7	94935198	94935199	rs3917549	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	7q21.3	PON1	rs3917549-C	0.195	7E-15	(E3 ubiquitin-protein ligase NEURL1, NEURL1.13604.27.3)	0.24	[0.18-0.3] unit increase	Affymetrix [10572788] (imputed)	N
1309	chr7	94935198	94935199	rs3917549	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	7q21.3	PON1	rs3917549-C	0.195	7E-14	(E3 ubiquitin-protein ligase RNF8, RNF8.14663.44.3)	0.23	[0.17-0.29] unit increase	Affymetrix [10572788] (imputed)	N
1309	chr7	94935198	94935199	rs3917549	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	7q21.3	PON1	rs3917549-C	0.195	5E-18	(B-cell antigen receptor complex-associated protein alpha chain, CD79A.7796.10.3)	0.27	[0.21-0.33] unit increase	Affymetrix [10572788] (imputed)	N
1309	chr7	94935198	94935199	rs3917549	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	7q21.3	PON1	rs3917549-C	0.195	3E-28	(Keratinocyte differentiation-associated protein, KRTDAP.5739.75.3)	0.34	[0.28-0.4] unit increase	Affymetrix [10572788] (imputed)	N
1309	chr7	94935198	94935199	rs3917549	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	7q21.3	PON1	rs3917549-C	0.195	3E-17	(cGMP-dependent protein kinase 1, beta isozyme, PRKG1.13067.5.3)	0.26	[0.2-0.32] unit increase	Affymetrix [10572788] (imputed)	N
1309	chr7	94935198	94935199	rs3917549	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	7q21.3	PON1	rs3917549-C	0.195	1E-21	(Tensin-4, TNS4.9927.96.3)	0.3	[0.24-0.36] unit increase	Affymetrix [10572788] (imputed)	N
1309	chr7	94935198	94935199	rs3917549	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	7q21.3	PON1	rs3917549-C	0.195	1E-14	(Acyl-CoA-binding domain-containing protein 7, ACBD7.13563.259.3)	0.24	[0.18-0.3] unit increase	Affymetrix [10572788] (imputed)	N
1309	chr7	94936234	94936235	rs3917545	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	7q21.3	PON1	rs3917545-C	0.131	8E-14	(Erythroid membrane-associated protein, ERMAP.8631.13.3)	0.28	[0.2-0.36] unit increase	Affymetrix [10572788] (imputed)	N
1309	chr7	94937445	94937446	rs662	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	7q21.3	PON1	rs662-C	0.283	1E-93	(Syntaxin-10, STX10.12842.43.3)	0.53	[0.47-0.59] unit increase	Affymetrix [10572788] (imputed)	N
1309	chr7	94937696	94937696	rs3917539	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	7q21.3	PON1	rs3917539-TAA	0.282	3E-93	(Testis-expressed sequence 29 protein, TEX29.10557.6.3)	0.53	[0.47-0.59] unit increase	Affymetrix [10572788] (imputed)	N
1309	chr7	94937696	94937696	rs3917539	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	7q21.3	PON1	rs3917539-TAA	0.282	2E-38	(Sulfiredoxin-1, SRXN1.14268.4.3)	0.35	[0.29-0.41] unit increase	Affymetrix [10572788] (imputed)	N
1309	chr7	94938256	94938257	rs2057681	23281178	Hong MG	2013-03-01	Hum Mutat	A genome-wide assessment of variability in human serum metabolism.	Metabolite levels	214 European ancestry prostate cancer cases, 188 European ancestry controls	489 European ancestry prostate cancer cases	7q21.3	PON1	rs2057681-G	NR	7E-15	(C9H14Ona)			Affymetrix [333722]	N
1309	chr7	94938256	94938257	rs2057681	22982463	Tang WH	2012-09-13	Arterioscler Thromb Vasc Biol	Clinical and genetic association of serum paraoxonase and arylesterase activities with cardiovascular risk.	Paraoxonase activity	2,136 European ancestry individuals	NA	7q21.3	PON-1	rs2057681-G	0.29	1E-303	(Serum Paraoxonases activity)			Affymetrix [2421770] (imputed)	N
1309	chr7	94940118	94940119	rs3917532	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	7q21.3	PON1	rs3917532-T	0.283	4E-40	(NHL repeat-containing protein 3, NHLRC3.9087.8.3)	0.36	[0.3-0.42] unit increase	Affymetrix [10572788] (imputed)	N
1309	chr7	94940118	94940119	rs3917532	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	7q21.3	PON1	rs3917532-T	0.283	4E-21	(Allergin-1, MILR1.11173.29.3)	0.26	[0.2-0.32] unit increase	Affymetrix [10572788] (imputed)	N
1309	chr7	94941037	94941038	rs1157745	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	7q21.3	PON1	rs1157745-T	0.283	2E-15	(Carbonic anhydrase 5A, mitochondrial, CA5A.8791.151.3)	0.22	[0.16-0.28] unit increase	Affymetrix [10572788] (imputed)	N
1309	chr7	94946083	94946084	rs854560	32439431	Simard M	2020-05-19	J Allergy Clin Immunol	Polygenic risk score for atopic dermatitis in the Canadian population.	Atopic dermatitis (moderate to severe)	222 South East Asian ancestry, East Asian ancestry, South Asian ancestry, African American or Afro-Caribbean, European ancestry, Greater Middle Eastern (Middle Eastern, North African or Persian) cases, 2,466 Greater Middle Eastern (Middle Eastern, North African or Persian), Hispanic or Latin American, NR moderate to severe atopic dermatitis cases, 2,466 South East Asian ancestry, East Asian ancestry, South Asian ancestry, African American or Afro-Caribbean, European ancestry, Greater Middle Eastern (Middle Eastern, North African or Persian) cases, 2,466 Greater Middle Eastern (Middle Eastern, North African or Persian), Hispanic or Latin American, NR controls without moderate to severe atopic dermatitis	NA	7q21.3		rs854560-A	NR	2E-12	(additive)	0.682	[0.492-0.871] unit increase	Illumina [5894709] (imputed)	N
1309	chr7	94953894	94953895	rs705379	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large HDL	115,082 European ancestry individuals	NA	7q21.3		rs705379-G	0.522524	4E-14		0.0283984	[0.021-0.036] unit increase	NR [11722792] (imputed)	N
1309	chr7	94953894	94953895	rs705379	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	7q21.3		rs705379-G	0.522524	7E-12		0.0250874	[0.018-0.032] unit increase	NR [11722792] (imputed)	N
1309	chr7	94953894	94953895	rs705379	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	7q21.3		rs705379-G	0.522542	1E-11		0.0259592	[0.018-0.033] unit increase	NR [11722792] (imputed)	N
1309	chr7	94953894	94953895	rs705379	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large HDL	115,082 European ancestry individuals	NA	7q21.3		rs705379-G	0.522524	2E-14		0.0288214	[0.021-0.036] unit increase	NR [11722792] (imputed)	N
1309	chr7	94953894	94953895	rs705379	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large HDL	115,082 European ancestry individuals	NA	7q21.3		rs705379-G	0.522524	2E-11		0.024642	[0.017-0.032] unit increase	NR [11722792] (imputed)	N
1309	chr7	94953894	94953895	rs705379	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	7q21.3		rs705379-G	0.522542	4E-10		0.0230927	[0.016-0.03] unit decrease	NR [11722792] (imputed)	N
1309	chr7	94953894	94953895	rs705379	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	7q21.3		rs705379-G	0.522524	8E-9		0.0228511	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
1309	chr7	94953894	94953895	rs705379	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	7q21.3		rs705379-G	0.522524	3E-8		0.0204191	[0.013-0.028] unit increase	NR [11722792] (imputed)	N
1309	chr7	94953894	94953895	rs705379	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	7q21.3		rs705379-G	0.522524	4E-14		0.029329	[0.022-0.037] unit increase	NR [11722792] (imputed)	N
1309	chr7	94953894	94953895	rs705379	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	7q21.3		rs705379-G	0.522524	5E-13		0.0280866	[0.02-0.036] unit increase	NR [11722792] (imputed)	N
1309	chr7	94953894	94953895	rs705379	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	7q21.3		rs705379-G	0.522524	9E-13		0.0261218	[0.019-0.033] unit increase	NR [11722792] (imputed)	N
1309	chr7	94953894	94953895	rs705379	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large HDL particles	115,082 European ancestry individuals	NA	7q21.3		rs705379-G	0.522524	2E-13		0.0275838	[0.02-0.035] unit increase	NR [11722792] (imputed)	N
1309	chr7	94953894	94953895	rs705379	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	7q21.3		rs705379-G	0.522524	2E-11		0.0245572	[0.017-0.032] unit increase	NR [11722792] (imputed)	N
1309	chr7	94953894	94953895	rs705379	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	7q21.3		rs705379-G	0.522524	4E-12		0.0259509	[0.019-0.033] unit increase	NR [11722792] (imputed)	N
1309	chr7	94953894	94953895	rs705379	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	7q21.3		rs705379-G	0.522524	3E-10		0.0232765	[0.016-0.031] unit increase	NR [11722792] (imputed)	N
1309	chr7	94953894	94953895	rs705379	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	7q21.3		rs705379-G	0.522524	2E-12		0.0264772	[0.019-0.034] unit increase	NR [11722792] (imputed)	N
1309	chr7	94953894	94953895	rs705379	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	7q21.3		rs705379-G	0.522524	6E-11		0.024018	[0.017-0.031] unit increase	NR [11722792] (imputed)	N
1309	chr7	94953894	94953895	rs705379	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	7q21.3		rs705379-G	0.522524	1E-15		0.0296009	[0.022-0.037] unit increase	NR [11722792] (imputed)	N
1309	chr7	94953894	94953895	rs705379	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FLNA	5,368 Icelandic ancestry individuals	NA	7q21.3		rs705379-A	0.3798	4E-56		0.309614	[0.27-0.35] unit decrease	Illumina [7506463] (imputed)	N
1309	chr7	94953894	94953895	rs705379	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Stem cell factor levels	21,758 European ancestry individuals	9,173 individuals	7q21.3		rs705379-A	0.46	5E-18		0.0771	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1309	chr7	94953894	94953895	rs705379	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	7q21.3	PON1	rs705379-A	0.487	5E-22	(Testis-expressed sequence 29 protein, TEX29.10557.6.3)	0.24	[0.18-0.3] unit decrease	Affymetrix [10572788] (imputed)	N
1309	chr7	94953894	94953895	rs705379	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	7q21.3	PON1	rs705379-A	0.487	1E-29	(Dual specificity protein phosphatase 13 isoform A, DUSP13.6525.17.3)	0.28	[0.24-0.32] unit decrease	Affymetrix [10572788] (imputed)	N
1309	chr7	94954695	94954696	rs854572	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large HDL	115,082 European ancestry individuals	NA	7q21.3		rs854572-C	0.473898	3E-8		0.022019	[0.014-0.03] unit increase	NR [11722792] (imputed)	N
1309	chr7	94954695	94954696	rs854572	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	7q21.3		rs854572-C	0.473898	7E-9		0.0236012	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
1309	chr7	94954695	94954696	rs854572	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small HDL	115,082 European ancestry individuals	NA	7q21.3		rs854572-C	0.473898	5E-8		0.0227748	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
1309	chr7	94954695	94954696	rs854572	22982463	Tang WH	2012-09-13	Arterioscler Thromb Vasc Biol	Clinical and genetic association of serum paraoxonase and arylesterase activities with cardiovascular risk.	Paraoxonase activity	2,136 European ancestry individuals	NA	7q21.3	PON-1	rs854572-C	0.46	5E-116	(Serum Arylesterase activity)			Affymetrix [2421770] (imputed)	N
1309	chr7	94955527	94955528	rs757158	35264221	Caron B	2022-03-09	Genome Med	Integrative genetic and immune cell analysis of plasma proteins in healthy donors identifies novel associations involving primary immune deficiency genes.	PON 1 plasma levels	400 French ancestry individuals	NA	7q21.3		rs757158-C	NR	5E-9		0.091	[0.06-0.122] ng/mL increase	Illumina [5201092] (imputed)	N
1309	chr7	94955527	94955528	rs757158	32492067	Ruffieux H	2020-06-03	PLoS Comput Biol	A fully joint Bayesian quantitative trait locus mapping of human protein abundance in plasma.	Protein quantitative trait loci	376 European ancestry individuals	400 European ancestry individuals	7q21.3	NR	rs757158-?	NR	1E-8	(paraoxonase 1)			Illumina [~ 4000000] (imputed)	N
1309	chr7	94955527	94955528	rs757158	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	7q21.3	PON1	rs757158-T	0.4141566	7E-12	(EA, Aspartate aminotransferase, cytoplasmic)	0.3051	[0.22-0.39] unit increase	Affymetrix [509946]	N
1309	chr7	94968759	94968760	rs112417969	31250787	Fawns-Ritchie C	2019-06-01	Twin Res Hum Genet	Genetic Contributions to Health Literacy.	Health literacy	1,771 English ancestry cases, 4,012 English ancestry controls	NA	7q21.3	PON1	rs112417969-A	NR	6E-6		0.02667	[0.015-0.038] unit increase	Illumina [NR] (imputed)	N
1309	chr7	94974184	94974185	rs17883513	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	7q21.3	NR	rs17883513-G	NR	8E-12		0.047	[0.033-0.061] unit increase	Affymetrix [9000000] (imputed)	N
1309	chr7	95011947	95011948	rs183906992	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	7q21.3	PON1	rs183906992-T	0.957251	5E-10		0.029467	[0.02-0.039] unit decrease	Affymetrix [NR] (imputed)	N
1310	chr7	95032438	95032438	rs10686867	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	7q21.3		rs10686867-C	0.748041	2E-13		0.0337727	[0.025-0.043] unit decrease	NR [11722792] (imputed)	N
1310	chr7	95034774	95034775	rs7493	26169365	Huang KC	2015-07-14	BMC Complement Altern Med	Susceptible gene of stasis-stagnation constitution from genome-wide association study related to cardiovascular disturbance and possible regulated traditional Chinese medicine.	Yu-Zhi constitution type in type 2 diabetes	539 non-aboriginal Taiwanese ancestry low Yu-Zhi score individuals, 408 non-aboriginal Taiwanese ancestry high Yu-Zhi score individuals	NA	7q21.3	PON2	rs7493-C	0.177	5E-6	(Genotype model)	1.06	[0.74-1.51]	Illumina [508761]	N
1310	chr7	95042425	95042426	rs186586197	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	7q21.3		rs186586197-C	NR	1E-11		0.0454	[0.032-0.059] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
1310	chr7	95042425	95042426	rs186586197	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	7q21.3	NR	rs186586197-C	NR	5E-10		0.0462	[0.032-0.061] unit increase	Affymetrix [9000000] (imputed)	N
1310	chr7	95042425	95042426	rs186586197	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	7q21.3	PON2	rs186586197-A	0.9685	5E-9		0.034205	[0.023-0.046] unit decrease	Affymetrix [NR] (imputed)	N
1310	chr7	95057509	95057510	rs12534274	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	7q21.3		rs12534274-G	0.734828	3E-12		0.031114	[0.022-0.04] unit increase	NR [11722792] (imputed)	N
1310	chr7	95117702	95117703	rs11977715	26087016	Pappa I	2015-06-18	Am J Med Genet B Neuropsychiatr Genet	A genome-wide approach to children's aggressive behavior: The EAGLE consortium.	Middle childhood and early adolescence aggressive behavior	16,311 European ancestry individuals	NA	7q21.3	ASB4	rs11977715-A	0.2189	8E-6				Affymetrix, Illumina [up to 3856236] (imputed)	N
1310	chr7	95131216	95131217	rs6973126	29673008	Bonfiglio F	2018-04-19	Neurogastroenterol Motil	A GWAS meta-analysis from 5 population-based cohorts implicates ion channel genes in the pathogenesis of irritable bowel syndrome.	Irritable bowel syndrome	1,335 European ancestry cases, 9,768 European ancestry controls	NA	7q21.3	Intergenic	rs6973126-C	0.486	3E-6		1.22	[NR]	Illumina [2483385] (imputed)	N
1310	chr7	95138754	95138755	rs737902	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	7q21.3	Intergenic	rs737902-A	0.2732	5E-9	(MTAG)	0.0117	[0.0078-0.0156] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1310	chr7	95138754	95138755	rs737902	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	7q21.3	Intergenic	rs737902-A	0.2731	2E-11	(MTAG)	0.0125	[0.0088-0.0162] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1310	chr7	95138754	95138755	rs737902	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	7q21.3	Intergenic	rs737902-A	0.2728	2E-9	(MTAG)	0.0088	[0.0059-0.0117] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1310	chr7	95138754	95138755	rs737902	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	7q21.3	NR	rs737902-?	NR	6E-6		4.537	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1310	chr7	95144820	95144821	rs111401235	34162658	Quinn MC	2021-06-23	Cancer Epidemiol Biomarkers Prev	Identification of a locus near ULK1 associated with progression-free survival in ovarian cancer.	Progression free survival in serous epithelial ovarian cancer treated with carboplatin and paclitaxel	1,751 European ancestry individuals	NA	7q21.3	NR	rs111401235-A		8E-6		0.4668	[0.26-0.67] unit increase	Illumina [12759548] (imputed)	N
1310	chr7	95153448	95153449	rs544430450	34214102	Sarnowski C	2021-07-02	PLoS One	Identification of novel and rare variants associated with handgrip strength using whole genome sequence data from the NHLBI Trans-Omics in Precision Medicine (TOPMed) Program.	Hand grip strength	8674 European ancestry, African American or Afro-Caribbean, Hispanic or Latin American, Asian ancestry, Native American ancestry, Other ancestry women	NA	7q21.3		rs544430450-A	0.001	2E-7		6.37	kg decrease	NR [638486]	N
1310	chr7	95153448	95153449	rs544430450	34214102	Sarnowski C	2021-07-02	PLoS One	Identification of novel and rare variants associated with handgrip strength using whole genome sequence data from the NHLBI Trans-Omics in Precision Medicine (TOPMed) Program.	Hand grip strength	3145 African American or Afro-Caribbean individuals	NA	7q21.3		rs544430450-A	0.006	2E-6		6.1	kg decrease	NR [638486]	N
1310	chr7	95153448	95153449	rs544430450	34214102	Sarnowski C	2021-07-02	PLoS One	Identification of novel and rare variants associated with handgrip strength using whole genome sequence data from the NHLBI Trans-Omics in Precision Medicine (TOPMed) Program.	Hand grip strength	13,552 European, African American or Afro-Caribbean, Hispanic or Latin American, Asian, Native American, Other ancestry individuals	NA	7q21.3		rs544430450-A	0.001	2E-8		6.66	kg decrease	NR [638486]	N
1311	chr7	95169513	95169514	rs6465468	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	7q21.3	NR	rs6465468-G	NR	1E-6		0.014	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
1311	chr7	95169513	95169514	rs6465468	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	7q21.3	ASB4	rs6465468-T	0.2957	7E-7	(women)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1311	chr7	95169513	95169514	rs6465468	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	7q21.3	ASB4	rs6465468-T	0.2957	2E-6				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1311	chr7	95169513	95169514	rs6465468	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	7q21.3	ASB4	rs6465468-T	0.2957	8E-7		0.0183	[0.011-0.026] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1311	chr7	95169513	95169514	rs6465468	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	7q21.3	ASB4	rs6465468-T	0.2957	6E-7	(women)	0.0237	[0.014-0.033] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1311	chr7	95169513	95169514	rs6465468	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	7q21.3	NR	rs6465468-T	0.307836480675703	3E-8		0.017052807	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1311	chr7	95169513	95169514	rs6465468	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	7q21.3	ASB4	rs6465468-T	0.306	5E-8	(EA, women)	0.025	[0.016-0.033] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1311	chr7	95169513	95169514	rs6465468	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	7q21.3	ASB4	rs6465468-T	0.304	2E-6	(EA)	0.017	[0.0097-0.0235] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1311	chr7	95169513	95169514	rs6465468	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	7q21.3	ASB4	rs6465468-T	0.3	2E-6		0.016	[0.0093-0.0227] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1311	chr7	95216696	95216697	rs17626204	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	7q21.3	ASB4	rs17626204-?	NR	8E-6	(TAG 48:2)	0.5098799	[0.29-0.73] unit increase	Affymetrix [at least 2500000] (imputed)	N
1311	chr7	95216696	95216697	rs17626204	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	7q21.3	ASB4	rs17626204-?	NR	6E-6	(TAG 50:3)	0.5174426	[0.29-0.74] unit increase	Affymetrix [at least 2500000] (imputed)	N
1311	chr7	95222200	95222201	rs144262262	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Alanine levels	115,078 European ancestry individuals	NA	7q21.3		rs144262262-T	0.996489	5E-8		0.188868	[0.12-0.26] unit increase	NR [11722792] (imputed)	N
1311	chr7	95266518	95266519	rs73393947	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Pars opercularis volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	7q21.3	NR	rs73393947-?		3E-7				Illumina [4322238] (imputed)	N
1312	chr7	95303255	95303256	rs854089	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	7q21.3	PDK4, DYNC1I1	rs854089-?		8E-13				Affymetrix, Illumina [NR] (imputed)	N
1312	chr7	95339453	95339454	rs6946681	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	7q21.3		rs6946681-?	NR	5E-9		0.0147193	[0.0098-0.0196] unit decrease	Affymetrix [20259828] (imputed)	N
1312	chr7	95347946	95347947	rs10499921	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	7q21.3	NR	rs10499921-C		2E-8		0.07	[0.05-0.09] unit increase	NR [NR]	N
1313	chr7	95441349	95441350	rs1922332	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	7q21.3		rs1922332-?	NR	2E-12				NR [~ 8900000] (imputed)	N
1313	chr7	95455844	95455845	rs3779483	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Dementia and core Alzheimer's disease neuropathologic changes	up to 3,887 cases, up to 1,027 controls	NA	7q21.3	DYNC1I1	rs3779483-T	0.0554	2E-6	(Complete)	1.2911	[0.76-1.82] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1313	chr7	95455844	95455845	rs3779483	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Dementia and core Alzheimer's disease neuropathologic changes	up to 3,887 cases, up to 1,027 controls	NA	7q21.3	DYNC1I1	rs3779483-T	0.0553	2E-6	(Primary)	1.2925	[0.76-1.82] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1313	chr7	95494001	95494002	rs59034108	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	7q21.3	DYNC1I1	rs59034108-A	0.898	2E-6		0.071	[0.042-0.1] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1314	chr7	95595534	95595535	rs6961619	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	7q21.3		rs6961619-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1314	chr7	95599401	95599402	rs73230245	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	7q21.3		rs73230245-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1314	chr7	95600367	95600368	rs13231718	22610502	Kennedy RB	2012-05-19	Hum Genet	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IL-10)	Up to 512 European ancestry individuals, up to 199 African American individuals	NA	7q21.3	DYNC1I1	rs13231718-C		5E-9	(AA)			Illumina [NR]	N
1314	chr7	95606506	95606507	rs2051706	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Spinal canal stenosis	9,660 European ancestry cases, 445,127 European ancestry controls, 661 East Asian ancestry cases, 178,065 East Asian ancestry controls	NA	7q21.3		rs2051706-G	NR	4E-8		0.0989	[0.064-0.134] unit increase	Affymetrix, Illumina [25840105] (imputed)	N
1314	chr7	95610202	95610203	rs1352413	27696742	Yau MS	2016-10-01	Arthritis Rheumatol	Genome-Wide Association Study of Radiographic Knee Osteoarthritis in North American Caucasians.	Knee osteoarthritis	2,672 European ancestry cases, 1,776 European ancestry controls	1,226 European ancestry cases, 1,392 European ancestry controls	7q21.3	DYNC1I1	rs1352413-A	0.07	6E-6		1.39	[1.21-1.61]	Illumina [at least 8248570] (imputed)	N
1314	chr7	95624309	95624310	rs1988399	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	7q21.3	NR	rs1988399-?	NR	7E-6	(Native Hawaiian)	0.2318	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1314	chr7	95631195	95631196	rs1488515	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	7q21.3	DYNC1I1	rs1488515-C	0.225	2E-6	(Total energy expenditure RQ)	0.04	[NR] unit increase	Illumina [899892]	N
1314	chr7	95631195	95631196	rs1488515	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	7q21.3	DYNC1I1	rs1488515-C	0.225	1E-6	(Fat oxidation )	0.04	[NR] %NPEE increase	Illumina [899892]	N
1315	chr7	95700007	95700008	rs77909595	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	QRS duration in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	7q21.3	NR	rs77909595-?	NR	2E-6				Affymetrix [5486770] (imputed)	N
1315	chr7	95710834	95710835	rs10227959	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	7q21.3		rs10227959-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1315	chr7	95716341	95716342	rs2299292	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7q21.3		rs2299292-?	NR	6E-8				NR [~ 8900000] (imputed)	N
1315	chr7	95718496	95718496	rs11456119	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Osteoarthritis of the hip or knee	39,427 European ancestry cases, 378,169 European ancestry controls	NA	7q21.3	NR	rs11456119-TA	0.37	1E-9		1.05	[1.03-1.07]	Affymetrix, Illumina [up to 17000000] (imputed)	N
1315	chr7	95719833	95719833	rs11409738	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Osteoarthritis	77,052 European ancestry cases, 378,169 European ancestry controls	NA	7q21.3	NR	rs11409738-TA	0.37	2E-10		1.04	[1.03-1.05]	Affymetrix, Illumina [up to 17000000] (imputed)	N
1315	chr7	95726174	95726175	rs6974235	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	7q21.3	NR	rs6974235-T	0.5013	2E-9	(European)	0.0372	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
1315	chr7	95726174	95726175	rs6974235	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	7q21.3	NR	rs6974235-T	0.4921	1E-9		0.0345	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
1315	chr7	95727966	95727967	rs6966540	33830993	Johnston KJA	2021-04-08	PLoS Genet	Sex-stratified genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	387,649 British ancestry individuals	NA	7q21.3	DYNC1I1	rs6966540-?	NR	1E-8			[NR]	NR [NR] (imputed)	N
1315	chr7	95727966	95727967	rs6966540	31194737	Johnston KJA	2019-06-13	PLoS Genet	Genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	387,649 British ancestry individuals	NA	7q21.3	DYNC1I1	rs6966540-T	0.3762	3E-8		0.0139	[0.009-0.0188] unit decrease	NR [NR]	N
1315	chr7	95727966	95727967	rs6966540	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	7q21.3	DYNC1I1	rs6966540-T	0.6266	2E-11		0.0128737	[0.0091-0.0166] unit decrease	NR [13737936] (imputed)	N
1315	chr7	95727966	95727967	rs6966540	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	7q21.3		rs6966540-?	NR	5E-24		0.0212756	[0.017-0.025] unit decrease	Affymetrix [20259828] (imputed)	N
1315	chr7	95734036	95734037	rs56876894	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 2 levels	252 European ancestry individuals	NA	7q21.3		rs56876894-A	NR	6E-6		0.63953	[0.37-0.91] unit decrease	Illumina [NR] (imputed)	N
1315	chr7	95768413	95768414	rs7778596	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Pork consumption	335,576 European ancestry individuals	NA	7q21.3	DYNC1I1, SLC25A13	rs7778596-?	NR	1E-8		0.00350381	[-0.00138-0.00839] unit increase	Affymetrix [25921788] (imputed)	N
1315	chr7	95768413	95768414	rs7778596	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Oily fish consumption	335,576 European ancestry individuals	NA	7q21.3	DYNC1I1, SLC25A13	rs7778596-?	NR	1E-8		0.0140977	[0.0092-0.019] unit increase	Affymetrix [25921788] (imputed)	N
1316	chr7	95844895	95844896	rs10156143	33830993	Johnston KJA	2021-04-08	PLoS Genet	Sex-stratified genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	387,649 British ancestry individuals	NA	7q21.3	SLC25A13	rs10156143-?	NR	6E-9			[NR]	NR [NR] (imputed)	N
1317	chr7	95950860	95950861	rs150043085	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	7q21.3	SLC25A13	rs150043085-A	0.9978	4E-6		0.4627	[0.27-0.66] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1317	chr7	96013071	96013072	rs2724028	32339537	Roberts V	2020-04-24	J Invest Dermatol	Genome wide association study identifies genetic associations with perceived age.	Youthful appearance (self-reported)	423,992 European ancestry individuals	NA	7q21.3	U7	rs2724028-A	0.228106	6E-9		0.97033685	NR	Affymetrix [~ 9600000] (imputed)	N
1317	chr7	96021107	96021108	rs724120	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	7q21.3		rs724120-?	NR	1E-13				NR [~ 8900000] (imputed)	N
1317	chr7	96041557	96041558	rs7778451	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	7q21.3	C7orf76	rs7778451-G	0.630673	8E-25		0.0196562	[0.016-0.023] unit increase	NR [13737936] (imputed)	N
1317	chr7	96041730	96041731	rs1859279	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	7q21.3		rs1859279-?	NR	1E-21		0.0203126	[0.016-0.025] unit increase	Affymetrix [20259828] (imputed)	N
1317	chr7	96047379	96047380	rs2524982	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7q21.3		rs2524982-?	NR	9E-9				NR [~ 8900000] (imputed)	N
1317	chr7	96075715	96075716	rs73239797	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		7q21.3	Intergenic	rs73239797-A	0.013	2E-6	(liability model)	0.39	[0.23-0.55] unit increase	NR [19725427] (imputed)	N
1318	chr7	96078563	96078564	rs3113037	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	7q21.3	SHFM1	rs3113037-T	0.232364749859023	3E-10		0.0040179	[NR] unit increase	Affymetrix [> 30000000] (imputed)	N
1318	chr7	96099492	96099493	rs3094756	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	7q21.3	NR	rs3094756-?	NR	6E-8				Illumina [at least 7383741] (imputed)	N
1318	chr7	96115098	96115099	rs10281460	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs affecting bone structure and mineralization)	7,870 European ancestry cases, 207,798 European ancestry controls, 6,143 East Asian ancestry cases, 172,583 East Asian ancestry controls	NA	7q21.3		rs10281460-G	NR	4E-8		0.0915	[0.059-0.124] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1318	chr7	96117917	96117918	rs4729260	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	7q21.3	SHFM1, C7orf76	rs4729260-C	0.665597	4E-9		0.014034807	[0.0094-0.0187] unit increase	Affymetrix [93095623] (imputed)	N
1318	chr7	96117917	96117918	rs4729260	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	7q21.3	SHFM1, C7orf76	rs4729260-C	0.665545	1E-12		0.016886538	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1318	chr7	96117917	96117918	rs4729260	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	7q21.3	SHFM1, C7orf76	rs4729260-C	0.665536	3E-11		0.015754845	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1318	chr7	96117917	96117918	rs4729260	19801982	Rivadeneira F	2009-10-04	Nat Genet	Twenty bone-mineral-density loci identified by large-scale meta-analysis of genome-wide association studies.	Bone mineral density (spine)	19,195 European ancestry individuals	NA	7q21.3	FLJ42280	rs4729260-G	0.32	2E-10		0.08	[0.05-0.11] s.d. decrease	Affymetrix, Illumina [2543686] (imputed)	N
1318	chr7	96119480	96119481	rs10429035	24249740	Zhang L	2013-11-17	Hum Mol Genet	Multistage genome-wide association meta-analyses identified two new loci for bone mineral density.	Bone mineral density	5,833 European ancestry females, 2,639 European ancestry males, 784 Han Chinese ancestry females, 763 Han Chinese ancestry males, 712 African American females, 409 Hispanic females	7,010 European ancestry females, 3,772 European ancestry males, 2,980 East Asian ancestry females, 2,159 East Asian ancestry males	7q21.3	FLJ42280	rs10429035-?	NR	4E-12	(hip)			Affymetrix, Illumina [5842825] (imputed)	N
1318	chr7	96120674	96120675	rs4727338	22504420	Estrada K	2012-04-15	Nat Genet	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Femoral neck bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	7q21.3	SLC25A13	rs4727338-C	0.67	8E-48		0.08	[NR] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1318	chr7	96124974	96124975	rs10238953	29459680	Claes P	2018-02-19	Nat Genet	Genome-wide mapping of global-to-local genetic effects on human facial shape.	Facial morphology traits (63 three-dimensional facial segments)	2,329 European ancestry individuals	1,719 European ancestry individuals	7q21.3	DLX6, DYNC1L1	rs10238953-?	NR	1E-22	(facial module 55)			Illumina [9478608] (imputed)	N
1318	chr7	96127354	96127355	rs6465508	30158200	Trajanoska K	2018-08-29	BMJ	Assessment of the genetic and clinical determinants of fracture risk: genome wide association and mendelian randomisation study.	Fractures	37,857 European or East Asian cases, 227,116 European or East Asian controls	147,200 European ancestry cases, 150,085 European ancestry controls	7q21.3	C7orf76, SHFM1	rs6465508-G	0.34	2E-19		1.04	[1.03-1.05]	Affymetrix, Illumina [2539801] (imputed)	N
1318	chr7	96127689	96127689	rs10661423	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	7q21.3	SHFM1, C7orf76	rs10661423-CTG	0.662032	5E-10		0.014712832	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
1318	chr7	96129070	96129071	rs62470042	32963231	Hofer E	2020-09-22	Nat Commun	Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.	Cortical volume	22,824 European and African American ancestry individuals	NA	7q21.3	C7orf76	rs62470042-?		7E-13	(Pars triangularis)			Affymetrix, Illumina [NR] (imputed)	N
1318	chr7	96133318	96133319	rs6965122	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	7q21.3	C7orf76	rs6965122-A	0.67179	1E-74		0.0386692	[0.035-0.043] unit increase	NR [13737936] (imputed)	N
1318	chr7	96133318	96133319	rs6965122	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	7q21.3		rs6965122-?	NR	2E-119				NR [~ 8900000] (imputed)	N
1318	chr7	96133318	96133319	rs6965122	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	7q21.3	NR	rs6965122-A	0.6832	5E-31	(European)	0.0766	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
1318	chr7	96133530	96133531	rs7781370	19801982	Rivadeneira F	2009-10-04	Nat Genet	Twenty bone-mineral-density loci identified by large-scale meta-analysis of genome-wide association studies.	Bone mineral density (hip)	19,195 European ancestry individuals	NA	7q21.3	FLJ42280	rs7781370-T	0.34	5E-12		0.08	[0.06-0.10] s.d. decrease	Affymetrix, Illumina [2543686] (imputed)	N
1318	chr7	96133870	96133871	rs6465510	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density (age 45-60)	18,805 European individuals	NA	7q21.3	NR	rs6465510-A	0.6498	2E-12		0.0787	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
1318	chr7	96134114	96134115	rs6465511	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density (age over 60)	22,504 European ancestry and African American individuals	NA	7q21.3	NR	rs6465511-C	0.3265	1E-16		0.0849	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
1318	chr7	96134114	96134115	rs6465511	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	7q21.3	NR	rs6465511-C	0.3248	1E-34		0.0738	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
1318	chr7	96134980	96134981	rs4132568	25293881	Patel YM	2014-10-07	Cancer Epidemiol Biomarkers Prev	The contribution of common genetic variation to nicotine and cotinine glucuronidation in multiple ethnic/racial populations.	Nicotine glucouronidation	437 European ancestry current smoker individuals, 364 African American current smoker individuals, 453 Latino current smoker individuals, 674 Japanese ancestry current smoker individuals, 311 Native Hawaiian ancestry current smoker individuals	NA	7q21.3	SHFM1	rs4132568-A	NR	3E-8		0.0343	[NR] unit decrease	Illumina [11892802] (imputed)	N
1318	chr7	96135273	96135274	rs4440558	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	7q21.3		rs4440558-?	NR	9E-123		0.0487134	[0.044-0.053] unit decrease	Affymetrix [20259828] (imputed)	N
1318	chr7	96135273	96135274	rs4440558	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	7q21.3	C7orf76	rs4440558-A	0.338518	4E-21	(women)	0.0423163	[0.033-0.052] unit decrease	NR [17166351] (imputed)	N
1318	chr7	96135273	96135274	rs4440558	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	7q21.3	C7orf76	rs4440558-A	0.338251	5E-47		0.0482858	[0.041-0.055] unit decrease	NR [17166351] (imputed)	N
1318	chr7	96135273	96135274	rs4440558	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	7q21.3	C7orf76	rs4440558-A	0.337946	1E-25	(men)	0.0547858	[0.044-0.065] unit decrease	NR [17166351] (imputed)	N
1318	chr7	96143803	96143804	rs11768577	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Chin dimples	58,032 European ancestry cases, 13,457 European ancestry controls	NA	7q21.3	C7orf76, SHFM1	rs11768577-?	NR	5E-56		1.352	[1.303-1.402]	Illumina [13537761] (imputed)	N
1318	chr7	96143841	96143841	rs35108541	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	7q21.3		rs35108541-?	NR	3E-124		0.0491762	[0.045-0.053] unit decrease	Affymetrix [20259828] (imputed)	N
1318	chr7	96154626	96154627	rs182552482	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	7q21.3		rs182552482-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1318	chr7	96154911	96154912	rs4448201	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Osteoporosis	8,520 European ancestry cases, 479,981 European ancestry controls, 9,794 East Asian ancestry cases, 168,932 East Asian ancestry controls	NA	7q21.3		rs4448201-C	NR	4E-8		0.0759	[0.049-0.103] unit decrease	Affymetrix, Illumina [25844994] (imputed)	N
1318	chr7	96154911	96154912	rs4448201	29499414	Pei YF	2018-02-27	Bone	Joint study of two genome-wide association meta-analyses identified 20p12.1 and 20q13.33 for bone mineral density.	Lumbar spine bone mineral density	up to 4,692 European ancestry individuals, up to 1,539 Han Chinese ancestry individuals, up to 849 African American individuals, up to 446 Hispanic individuals, 2,882 European ancestry whole-genome sequenced individuals, 3,549 European ancestry whole-exome sequenced individuals, 26,534 European ancestry non-array genotype imputed individuals	NA	7q21.3	FLJ42280	rs4448201-C	0.476959	1E-11		0.0563	[0.04-0.073] unit increase	Affymetrix, Illumina [7998108] (imputed)	N
1318	chr7	96154911	96154912	rs4448201	29499414	Pei YF	2018-02-27	Bone	Joint study of two genome-wide association meta-analyses identified 20p12.1 and 20q13.33 for bone mineral density.	Femoral neck bone mineral density	up to 4,692 European ancestry individuals, up to 1,539 Han Chinese ancestry individuals, up to 849 African American individuals, up to 446 Hispanic individuals, 2,882 European ancestry whole-genome sequenced individuals, 3,549 European ancestry whole-exome sequenced individuals, 26,534 European ancestry non-array genotype imputed individuals	NA	7q21.3	FLJ42280	rs4448201-C	0.476959	3E-20		0.0668	[0.052-0.081] unit increase	Affymetrix, Illumina [7998108] (imputed)	N
1318	chr7	96154911	96154912	rs4448201	28472463	Mullin BH	2017-05-04	Hum Mol Genet	Genome-wide association study meta-analysis for quantitative ultrasound parameters of bone identifies five novel loci for broadband ultrasound attenuation.	Bone ultrasound measurement (velocity of sound)	1,268 whole genome sequenced European ancestry women, 8,880 European ancestry women, 6,479 European ancestry men	NA	7q21.3	C7orf76	rs4448201-G	0.33	2E-7		0.06	[0.04-0.08] unit decrease	Illumina [11973598] (imputed)	N
1318	chr7	96156847	96156848	rs4296976	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 54)	4,680 European ancestry individuals	3,566 European ancestry individuals	7q21.3		rs4296976-C	0.282210595	8E-74				Illumina [7417619] (imputed)	N
1318	chr7	96157188	96157189	rs6465515	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	7q21.3		rs6465515-?	NR	3E-41		0.0290797	[0.025-0.033] unit increase	Affymetrix [20259828] (imputed)	N
1318	chr7	96165693	96165694	rs73224503	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	7q21.3	SEM1	rs73224503-G	0.892495	5E-9		0.00220865	[0.0015-0.0029] unit increase	Affymetrix [13995440] (imputed)	N
1318	chr7	96167809	96167810	rs150691387	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7q21.3	NR	rs150691387-G	0.01045	1E-8	(SELENBP1)	1.804	NR unit increase	Illumina [1671387] (imputed)	N
1318	chr7	96167809	96167810	rs150691387	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7q21.3	NR	rs150691387-G	0.01045	1E-8	(HAL)	0.2454	NR unit increase	Illumina [1671387] (imputed)	N
1318	chr7	96167809	96167810	rs150691387	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7q21.3	NR	rs150691387-G	0.01045	1E-18	(MT1H)	0.1026	NR unit increase	Illumina [1671387] (imputed)	N
1318	chr7	96167809	96167810	rs150691387	31296530	Trendowski MR	2019-07-11	Clin Cancer Res	Clinical and Genome-Wide Analysis of Serum Platinum Levels after Cisplatin-Based Chemotherapy.	Serum platinum levels after completion of cisplatin chemotherapy	866 European ancestry individuals, 17 non-European ancestry individuals, 127 individuals	NR	7q21.3	NR	rs150691387-G	0.0135	4E-7		0.63	[0.39-0.87] unit increase	Illumina [7305641] (imputed)	N
1318	chr7	96175093	96175094	rs10458281	32963231	Hofer E	2020-09-22	Nat Commun	Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.	Cortical surface area	18,617 European and African American ancestry individuals	22,363 European ancestry individuals	7q21.3	LOC100506136	rs10458281-?		1E-26	(Pars triangularis)			Affymetrix, Illumina [NR] (imputed)	N
1318	chr7	96190952	96190953	rs184445624	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		SEM1	rs184445624-?	NR	4E-11	(female)	3.50547	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1318	chr7	96194570	96194571	rs6964260	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	8,072 individuals	NA	7q21.3		rs6964260-T	0.34	5E-14				NR [13131314] (imputed)	N
1318	chr7	96194570	96194571	rs6964260	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	5,199 individuals	NA	7q21.3		rs6964260-T	0.34	4E-12				Affymetrix [9061022] (imputed)	N
1318	chr7	96194570	96194571	rs6964260	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	7q21.3		rs6964260-T	0.34	5E-324				Affymetrix [9061022] (imputed)	N
1318	chr7	96196905	96196906	rs67055449	32963231	Hofer E	2020-09-22	Nat Commun	Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.	Cortical volume	22,824 European and African American ancestry individuals	NA	7q21.3	LOC100506136	rs67055449-?		4E-19	(Pars triangularis)			Affymetrix, Illumina [NR] (imputed)	N
1318	chr7	96197348	96197349	rs12704861	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	8,072 individuals	NA	7q21.3		rs12704861-C	0.34	7E-13				NR [13131314] (imputed)	N
1318	chr7	96197348	96197349	rs12704861	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	5,199 individuals	NA	7q21.3		rs12704861-C	0.34	7E-6				Affymetrix [9061022] (imputed)	N
1318	chr7	96197348	96197349	rs12704861	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	7q21.3		rs12704861-C	0.34	6E-153		26.35	z score increase	Affymetrix [9061022] (imputed)	N
1318	chr7	96201272	96201273	rs62471406	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	7q21.3	SEM1	rs62471406-T	0.44	9E-16		8.05	z-score increase	Affymetrix [4311822] (imputed)	N
1318	chr7	96202717	96202718	rs10278627	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	7q21.3	NR	rs10278627-A	0.6606	1E-36	(Pars Triangularis)	12.091282	[10.22-13.96] unit decrease	Affymetrix, Illumina [NR]	N
1318	chr7	96206155	96206156	rs6951355	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 2)	19,670 European ancestry individuals	NA	7q21.3		rs6951355-?	NR	1E-70				NR [9705931] (imputed)	N
1319	chr7	96210218	96210219	rs201650162	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	7q21.3	SHFM1, C7orf76	rs201650162-?		1E-25				NR [7428630] (imputed)	N
1319	chr7	96212709	96212710	rs13235131	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (min-P)	26,502 European ancestry individuals	NA	7q21.3	C1orf106, KIF21B, CACNA1S	rs13235131-?		2E-21				NR [7428630] (imputed)	N
1319	chr7	96212709	96212710	rs13235131	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	7q21.3	ACKR3	rs13235131-?		5E-28				NR [7428630] (imputed)	N
1319	chr7	96212709	96212710	rs13235131	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (min-P)	26,502 European ancestry individuals	NA	7q21.3	NR	rs13235131-?		1E-20				NR [7428630] (imputed)	N
1319	chr7	96214959	96214960	rs7790840	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	7q21.3		rs7790840-G	0.34	4E-93		20.47	z score increase	Affymetrix [9061022] (imputed)	N
1319	chr7	96215447	96215448	rs34898775	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	7q21.3	NR	rs34898775-G	0.3069	1E-17				NR [9056863] (imputed)	N
1319	chr7	96219459	96219460	rs7788173	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	7q21.3	NR	rs7788173-A	0.3072	1E-17				NR [9056863] (imputed)	N
1319	chr7	96227719	96227720	rs56290730	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	7q21.3	NR	rs56290730-T	0.7705	3E-13	(Pars Triangularis)	8.103512	[5.93-10.28] unit increase	Affymetrix, Illumina [NR]	N
1319	chr7	96261471	96261472	rs12704868	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	7q21.3		rs12704868-A	NR	4E-17		0.0172	[0.013-0.021] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
1319	chr7	96261471	96261472	rs12704868	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	7q21.3	NR	rs12704868-A	0.4361	2E-16	(European)	0.052	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
1319	chr7	96261471	96261472	rs12704868	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	7q21.3	NR	rs12704868-A	0.4247	2E-17		0.0494	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
1319	chr7	96308942	96308943	rs2272224	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	7q21.3	SEM1	rs2272224-T	0.730722	4E-14		0.0166811	[0.012-0.021] unit decrease	NR [13737936] (imputed)	N
1320	chr7	96346087	96346088	rs13310130	27397699	Pei YF	2016-07-07	Bone	Genome-wide association meta-analyses identified 1q43 and 2q32.2 for hip Ward's triangle areal bone mineral density.	Bone mineral density (Ward's triangle area)	4,305 European ancestry individuals,1,579 Chinese Han ancestry individuals, 845 African-American individuals, 446 Hispanic individuals		7q21.3	SHFM1	rs13310130-G	NR	9E-7		0.09	[NR] unit decrease	Affymetrix, Illumina [at least 9551331] (imputed)	N
1320	chr7	96362343	96362344	rs1464807	20732625	Neale BM	2010-08-01	J Am Acad Child Adolesc Psychiatry	Meta-analysis of genome-wide association studies of attention-deficit/hyperactivity disorder.	Attention deficit hyperactivity disorder	2,064 European ancestry trios, 896 European ancestry cases, 2,455 European ancestry controls	NA	7q21.3	SHFM1	rs1464807-T	NR	1E-6				Affymetrix, Illumina, Perlegen [1206462] (imputed)	N
1320	chr7	96362893	96362894	rs1524920	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	7q21.3	NR	rs1524920-T	0.6045	2E-13		0.0429	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
1320	chr7	96365422	96365423	rs73228360	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	7q21.3	SHFM1, DLX6	rs73228360-C	0.9258	1E-13		1.0574179		Affymetrix [11880941] (imputed)	N
1320	chr7	96366341	96366342	rs12704876	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	7q21.3	NR	rs12704876-?	NR	1E-6				Illumina [at least 7383741] (imputed)	N
1320	chr7	96371731	96371732	rs1524927	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	7q21.3	NR	rs1524927-T	0.5718	1E-13	(European)	0.047	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
1320	chr7	96398078	96398079	rs2922921	29724592	Pottier C	2018-04-30	Lancet Neurol	Potential genetic modifiers of disease risk and age at onset in patients with frontotemporal lobar degeneration and GRN mutations: a genome-wide association study.	Frontotemporal dementia with GRN mutation (age at onset)	382 European ancestry individuals	67 European ancestry individuals	7q21.3	SHFM1	rs2922921-A	0.03	2E-6		9.5	[5.6-13.39] unit increase	Illumina [7033776] (imputed)	N
1320	chr7	96410249	96410250	rs1449592	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	7q21.3		rs1449592-A	0.5133	5E-16		0.11323296	[0.086-0.141] mmHg decrease	Affymetrix, Illumina [242866] (imputed)	N
1320	chr7	96415054	96415055	rs12669076	20694011	Ferreira RC	2010-08-08	Nat Genet	Association of IFIH1 and other autoimmunity risk alleles with selective IgA deficiency.	Immunoglobulin A	430 European ancestry cases, 1,090 European ancestry controls	342 European ancestry cases, 886 European ancestry controls	7q21.3	SHFM1	rs12669076-?	0.66	2E-6		1.35	[1.18-1.54]	Illumina [2057134] (imputed)	N
1320	chr7	96455597	96455598	rs2922966	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	7q21.3		rs2922966-A	0.8357	1E-17		0.025	[0.019-0.031] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
1320	chr7	96457118	96457119	rs2948276	26835600	Hu Y	2016-02-02	Nat Commun	GWAS of 89,283 individuals identifies genetic variants associated with self-reporting of being a morning person.	Morning vs. evening chronotype	38,937 European ancestry morning chronotype individuals, 50,346 European ancestry evening chronotype individuals	NA	7q21.3	DLX5, SHFM1	rs2948276-A	0.82	1E-8		1.0869565		Illumina [7427422] (imputed)	N
1320	chr7	96461648	96461649	rs1947228	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	7q21.3	SHFM1	rs1947228-T	0.4194	2E-21		0.1451	[0.12-0.18] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1320	chr7	96468076	96468077	rs10254050	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	7q21.3	SHFM1, DLX6	rs10254050-G	0.8095	4E-29		1.0563009		Affymetrix [11880941] (imputed)	N
1320	chr7	96468076	96468077	rs10254050	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	7q21.3	SHFM1, DLX6	rs10254050-G	0.8095	4E-29		1.0593971		Affymetrix [11880941] (imputed)	N
1321	chr7	96474877	96474878	rs4729303	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	7q21.3		rs4729303-?	NR	2E-13				NR [~ 8900000] (imputed)	N
1321	chr7	96510001	96510002	rs73230688	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	7q21.3	DLX6	rs73230688-T	0.379292528190304	5E-7		0.0027841	[NR] unit decrease	Affymetrix [> 30000000] (imputed)	N
1321	chr7	96562910	96562911	rs11771984	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	7q21.3	NR	rs11771984-?	NR	2E-8				Illumina [at least 7383741] (imputed)	N
1321	chr7	96573440	96573441	rs754689812	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	7q21.3	intergenic	rs754689812-G		3E-10		0.168	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
1321	chr7	96579338	96579339	rs17598132	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	7q21.3		rs17598132-?	NR	7E-23		0.0297962	[0.024-0.036] unit increase	Affymetrix [20259828] (imputed)	N
1321	chr7	96579338	96579339	rs17598132	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	7q21.3	DLX6-AS1	rs17598132-C	0.868116	7E-6	(men)	0.0306063	[0.016-0.045] unit increase	NR [17166351] (imputed)	N
1321	chr7	96579338	96579339	rs17598132	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	7q21.3	DLX6-AS1	rs17598132-C	0.868057	2E-9		0.028236	[0.019-0.038] unit increase	NR [17166351] (imputed)	N
1321	chr7	96581810	96581811	rs17598306	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	7q21.3		rs17598306-?	NR	5E-23		0.029887	[0.024-0.036] unit increase	Affymetrix [20259828] (imputed)	N
1321	chr7	96581810	96581811	rs17598306	20923822	Niu N	2010-10-05	Genome Res	Radiation pharmacogenomics: a genome-wide association approach to identify radiation response biomarkers using human lymphoblastoid cell lines.	Radiation response	93 African American human lymphoblastoid cell lines, 89 European ancestry human lymphoblastoid cell lines, 95 Han Chinese ancestry human lymphoblastoid cell lines	NA	7q21.3	DLX6AS	rs17598306-?	0.08	9E-6				Affymetrix, Illumina [1348798]	N
1321	chr7	96590471	96590472	rs17598579	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	7q21.3	DLX6-AS1	rs17598579-G	0.867903	6E-26		0.0286317	[0.023-0.034] unit increase	NR [13737936] (imputed)	N
1321	chr7	96598825	96598826	rs10486860	25064007	Nakajima M	2014-07-27	Nat Genet	A genome-wide association study identifies susceptibility loci for ossification of the posterior longitudinal ligament of the spine.	Ossification of the posterior longitudinal ligament of the spine	1,112 Japanese ancestry cases, 6,810 Japanese ancestry controls	548 Japanese ancestry cases, 6,469 Japanese ancestry controls	7q21.3	NR	rs10486860-?	NR	4E-6		1.24	[1.13-1.36]	Illumina [5163786] (imputed)	N
1322	chr7	96611051	96611052	rs56363908	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	7q21.3		rs56363908-G	NR	2E-10		0.0266	[0.018-0.035] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1322	chr7	96611051	96611052	rs56363908	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	7q21.3	DLX6-AS1	rs56363908-A	0.95906	5E-12		0.0320786	[0.023-0.041] unit decrease	NR [13737936] (imputed)	N
1322	chr7	96611051	96611052	rs56363908	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7q21.3		rs56363908-?	NR	7E-17				NR [~ 8900000] (imputed)	N
1322	chr7	96614585	96614586	rs10241902	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Ischemic stroke (cardioembolic)	174 Indian ancestry cases, 2,154 Indian ancestry controls	NA	7q21.3		rs10241902-?	NR	9E-6		0.96607095	[0.951492317708231-0.980873000120495]	Illumina [up to 7827597] (imputed)	N
1322	chr7	96624256	96624257	rs2240294	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking initiation (ever regular vs never regular)	up to 433,216 European ancestry individuals	NA	7q21.3	DLX6-AS1	rs2240294-A	0.444	4E-8		0.0126	[0.0081-0.0171] unit decrease	Illumina [~ 250000] (imputed)	N
1322	chr7	96624256	96624257	rs2240294	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	7q21.3	DLX6	rs2240294-A	0.4478	3E-10		0.012697397	[0.0087-0.0167] unit decrease	Affymetrix [11514654] (imputed)	N
1322	chr7	96624256	96624257	rs2240294	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	7q21.3		rs2240294-?	NR	3E-12				NR [~ 8900000] (imputed)	N
1322	chr7	96629102	96629103	rs11768481	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking initiation	842,717 European ancestry individuals	NA	7q21.3	DLX6-AS1	rs11768481-A		3E-12		0.975	[NR]	Affymetrix [up to 79000000] (imputed)	N
1322	chr7	96629102	96629103	rs11768481	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	7q21.3		rs11768481-C	0.666	1E-9		0.013	[0.0091-0.0169] unit increase	Affymetrix [up to 90000000] (imputed)	N
1322	chr7	96629102	96629103	rs11768481	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	7q21.3	NR	rs11768481-A	0.34	1E-15		0.00932525	[0.007-0.0116] unit decrease	NR [9732723] (imputed)	N
1322	chr7	96629102	96629103	rs11768481	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	7q21.3	NR	rs11768481-A	0.34	5E-12		0.018556055	[0.013-0.024] unit decrease	NR [~ 10000000] (imputed)	N
1322	chr7	96631702	96631703	rs74570108	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	7q21.3		rs74570108-T	0.143414	5E-8		0.016073	[0.01-0.022] unit increase	Illumina [13479295] (imputed)	N
1322	chr7	96638266	96638267	rs3801289	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	7q21.3		rs3801289-A	0.663	3E-9		0.007	[0.005-0.009] unit increase	NR [NR] (imputed)	N
1322	chr7	96646436	96646437	rs6951996	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	7q21.3		rs6951996-A	0.0522	1E-8		0.0182	[0.012-0.024] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1322	chr7	96647183	96647184	rs1724298	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	7q21.3	DLX5	rs1724298-T	0.890353	5E-11		0.00259889	[0.0019-0.0033] unit increase	Affymetrix [13995440] (imputed)	N
1322	chr7	96647183	96647184	rs1724298	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	7q21.3	DLX5	rs1724298-T	0.891048	3E-29		0.0332063	[0.027-0.039] unit decrease	NR [13737936] (imputed)	N
1322	chr7	96647183	96647184	rs1724298	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	7q21.3		rs1724298-?	NR	5E-27				NR [~ 8900000] (imputed)	N
1322	chr7	96647183	96647184	rs1724298	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	7q21.3		rs1724298-?	NR	1E-25		0.0342394	[0.028-0.041] unit decrease	Affymetrix [20259828] (imputed)	N
1322	chr7	96647183	96647184	rs1724298	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	7q21.3	DLX5	rs1724298-T	0.89082	2E-6	(women)	0.0350508	[0.021-0.05] unit decrease	NR [17166351] (imputed)	N
1322	chr7	96647183	96647184	rs1724298	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	7q21.3	DLX5	rs1724298-T	0.890544	7E-10		0.0328463	[0.022-0.043] unit decrease	NR [17166351] (imputed)	N
1322	chr7	96648053	96648055	rs3028337	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gastroesophageal reflux disease	32,957 European ancestry cases, 434,296 European ancestry controls, 948 East Asian ancestry cases, 177,516 East Asian ancestry controls	NA	7q21.3		rs3028337-G	NR	5E-8		0.0743	[0.048-0.101] unit increase	Affymetrix, Illumina [25843127] (imputed)	N
1322	chr7	96649370	96649371	rs982346	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	7q21.3	Intergenic	rs982346-A	0.0521	2E-9	(MTAG)	0.018	[0.012-0.024] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1322	chr7	96649370	96649371	rs982346	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	7q21.3	NR	rs982346-?	NR	3E-6		4.684	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1322	chr7	96652215	96652216	rs111564934	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	7q21.3		rs111564934-G	0.03	5E-8		5.45	z score increase	Affymetrix [9061022] (imputed)	N
1322	chr7	96652458	96652459	rs75290158	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	7q21.3	Intergenic	rs75290158-A	NR	8E-7	(between families)	4.943	unit increase	Affymetrix [up to 15107142] (imputed)	N
1322	chr7	96656571	96656572	rs3757493	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	7q21.3	NR	rs3757493-T	0.424	1E-8	(European)	0.0359	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
1322	chr7	96660131	96660132	rs6960249	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	7q21.3	NR	rs6960249-T	0.5909	1E-8		0.0325	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
1322	chr7	96665280	96665281	rs10241381	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 8, orbital inclination due to vertical and horizontal position of exocanthion)	2,187 European ancestry individuals	NA	7q21.3	NR	rs10241381-G	0.4479	4E-6		0.1424	[0.082-0.202] unit increase	Illumina [34985077] (imputed)	N
1322	chr7	96718371	96718371	rs78456152	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	7q21.3		rs78456152-?	NR	8E-24		0.0217886	[0.018-0.026] unit increase	Affymetrix [20259828] (imputed)	N
1322	chr7	96718897	96718898	rs7811543	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	7q21.3		rs7811543-?	NR	1E-15				NR [~ 8900000] (imputed)	N
1322	chr7	96719088	96719089	rs62497458	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Postcentral gyrus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	7q21.3	NR	rs62497458-?		7E-6				Illumina [4322238] (imputed)	N
1322	chr7	96722040	96722041	rs6958059	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	7q21.3	SDHAF3	rs6958059-A	0.634932	8E-20		0.0175454	[0.014-0.021] unit increase	NR [13737936] (imputed)	N
1324	chr7	96886434	96886435	rs799605	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Longevity	up to 482,000 European ancestry individuals	NA	7q21.3	NR	rs799605-A	NR	2E-6		0.05627	[0.033-0.079] unit increase	Illumina [~ 540852]	N
1324	chr7	96979658	96979659	rs62496419	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	7q21.3	Intergenic	rs62496419-A	NR	5E-7	(between families)	5.027	unit increase	Affymetrix [up to 15107142] (imputed)	N
1325	chr7	97017794	97017795	rs10255878	23719583	Kerns SL	2013-05-26	Radiother Oncol	Genome-wide association study identifies a region on chromosome 11q14.3 associated with late rectal bleeding following radiation therapy for prostate cancer.	Adverse response to radiation therapy	79 European, African, Asian, and Hispanic ancestry cases, 241 European, African, Asian, and Hispanic ancestry controls	107 European, African, Asian, and Hispanic ancestry cases, 671 European, African, Asian, and Hispanic ancestry controls	7q21.3	ACN9, TAC1	rs10255878-?	0.14	4E-6		5.2	[1.9-14.5]	Affymetrix [614453]	N
1325	chr7	97097418	97097419	rs117723999	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Squamous cell lung carcinoma	7,426 European ancestry cases, 55,627 European ancestry controls	NA	7q21.3	SDHAF3, TAC1	rs117723999-T	0.015538428	4E-6		1.5691193	[1.294572365-1.901890883]	Illumina [10439017] (imputed)	N
1326	chr7	97209821	97209822	rs781544056	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	7q21.3	intergenic	rs781544056-T		2E-12		0.181	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
1326	chr7	97229777	97229778	rs10486003	22020760	Won HH	2011-10-21	Cancer	Polymorphic markers associated with severe oxaliplatin-induced, chronic peripheral neuropathy in colon cancer patients.	Response to platinum-based agents	96 colon cancer cases	247 colon cancer cases	7q21.3	TAC1	rs10486003-?	NR	5E-7		3.13	[1.92-5.26]	Affymetrix [656843]	N
1326	chr7	97231096	97231097	rs7787478	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	7q21.3	intergenic	rs7787478-G	0.13	2E-7	(AA)	7.92	[6.8-9.04]	Illumina [905956]	N
1327	chr7	97290907	97290908	rs76852421	35157032	Ramachandran D	2022-02-14	Hum Mol Genet	Genome-wide association study and functional follow-up identifies 14q12 as a candidate risk locus for cervical cancer.	Cervical cancer	363 German ancestry cases, 861 German ancestry controls	NA	7q21.3	NR	rs76852421-A	0.0309	5E-6		32.429	[31.92-32.93]	Illumina [10000612] (imputed)	N
1327	chr7	97310770	97310771	rs1949076	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	7q21.3	NR	rs1949076-A	0.21	3E-10		0.00836225	[0.0058-0.011] unit decrease	NR [9732723] (imputed)	N
1327	chr7	97333745	97333746	rs78951752	33831438	Williams JE	2021-04-05	Genomics	Key genetic variants associated with variation of milk oligosaccharides from diverse human populations.	Human milk oligosaccharide concentration (lacto-N-fucopentaose III) in non-secretors	90 European, Sub-Saharan African, Hispanic or unknown ancestry individuals	NA	7q21.3		rs78951752-?	NR	2E-10				Illumina [1128286]	N
1327	chr7	97350022	97350023	rs10260339	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	7q21.3	TAC1	rs10260339-G	0.8240625	6E-6	(TAC1, 9337_43_3)	0.14972797	[0.085-0.214] unit increase	Illumina [> 1000000] (imputed)	N
1327	chr7	97354949	97354950	rs6465607	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	7q21.3	TAC1	rs6465607-C	0.5182	4E-12		0.013480934	[0.0097-0.0173] unit decrease	Illumina [9339358] (imputed)	N
1327	chr7	97374774	97374775	rs6948180	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling nervous	373,121 European ancestry individuals	NA	7q21.3	TAC1	rs6948180-A	0.479058	1E-9		6.1	z score increase	NR [10847151] (imputed)	N
1327	chr7	97378080	97378081	rs2107139	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	7q21.3	TAC1	rs2107139-A	0.48	3E-12		0.0082	[0.0058-0.0106] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
1327	chr7	97385510	97385511	rs2017923	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	7q21.3		rs2017923-G	0.75	3E-11		0.009	[0.007-0.011] unit increase	NR [NR] (imputed)	N
1328	chr7	97390068	97390069	rs4729379	29970889	Day FR	2018-07-03	Nat Commun	Elucidating the genetic basis of social interaction and isolation.	Regular attendance at a religious group	66,259 European ancestry cases, 386,043 European ancestry controls	NA	7q21.3	TAC1, ASNS, MGC72080, OCM2	rs4729379-A	0.31598	9E-9		0.00454411	[0.003-0.0061] unit decrease	NR [NR] (imputed)	N
1328	chr7	97422925	97422926	rs1229542	23049088	Meng W	2012-10-09	Invest Ophthalmol Vis Sci	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		7q21.3	intergenic	rs1229542-?	.864	2E-6			[NR]	Affymetrix, Illumina [152234]	N
1328	chr7	97454979	97454980	rs2665441	30713548	Schurz H	2019-01-18	Front Genet	A Sex-Stratified Genome-Wide Association Study of Tuberculosis Using a Multi-Ethnic Genotyping Array.	Tuberculosis	242 South African admixed female cases, 168 South African admixed male cases, 223 South African admixed female controls, 182 South African admixed male controls	NA	7q21.3	ASNS	rs2665441-C	NR	6E-6		1.681	[1.34-2.10]	Illumina [848325]	N
1329	chr7	97620690	97620691	rs13438327	21658281	Aouizerat BE	2011-06-10	BMC Cardiovasc Disord	GWAS for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease.	Sudden cardiac arrest	88 European ancestry cases, 517 European ancestry controls	NA	7q21.3	OCM2	rs13438327-?	0.09	2E-6	(Recessive)	2.05	[1.53-2.76]	Affymetrix [319222]	N
1330	chr7	97671459	97671460	rs78874154	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	7q21.3	NR	rs78874154-C	NR	2E-11		0.0268	[0.019-0.035] unit decrease	Affymetrix [9000000] (imputed)	N
1330	chr7	97688439	97688440	rs4727386	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 91,972 European ancestry controls	6,852 European ancestry cases, 193,117 European ancestry controls	7q21.3	NR	rs4727386-A	0.466851604	7E-11		1.1179241	[1.08-1.16]	Affymetrix, Illumina [20400945] (imputed)	N
1330	chr7	97688439	97688440	rs4727386	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	7q21.3	NR	rs4727386-A	NR	5E-42		1.1	[1.08-1.11]	Affymetrix, Illumina [29235255] (imputed)	N
1330	chr7	97694857	97694858	rs847577	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	7q21.3	NR	rs847577-A	0.4176	6E-6	(EA)	0.0284	[0.016-0.041] unit decrease	Illumina [~ 11800000] (imputed)	N
1330	chr7	97695362	97695363	rs705308	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Prostate cancer	7,438 White British ancestry cases, 118,206 White British ancestry controls	NA	7q21.3		rs705308-?	NR	8E-10		1.11217	[1.08-1.15]	NR [680312]	N
1330	chr7	97707068	97707069	rs1799068	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	7q21.3	NR	rs1799068-T	0.379	8E-13		0.00795884	[0.0058-0.0101] unit increase	NR [9732723] (imputed)	N
1330	chr7	97707068	97707069	rs1799068	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	7q21.3	NR	rs1799068-T	0.379	3E-10		0.016609563	[0.011-0.022] unit increase	NR [~ 10000000] (imputed)	N
1330	chr7	97718649	97718650	rs35763039	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	7q21.3	NR	rs35763039-A	NR	7E-9		5.782	z score decrease	Affymetrix [10847151] (imputed)	N
1330	chr7	97719805	97719806	rs13221758	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	7q21.3		rs13221758-C	NR	1E-13		0.0151	[0.011-0.019] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
1330	chr7	97754073	97754074	rs73404162	33290408	Ray D	2020-12-08	PLoS Genet	A powerful method for pleiotropic analysis under composite null hypothesis identifies novel shared loci between Type 2 Diabetes and Prostate Cancer.	Type 2 diabetes or prostate cancer (pleiotropy)	62,892 European ancestry T2D cases, 79,194 European ancestry PrCa cases, 659,536 European ancestry controls	NA	7q21.3	LMTK2	rs73404162-?		8E-9				Illumina [5041948] (imputed)	N
1330	chr7	97773811	97773812	rs11768309	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Prostate cancer	11,599 European ancestry cases, 199,628 European ancestry controls, 5,672 East Asian ancestry cases, 84,660 East Asian ancestry controls	NA	7q21.3		rs11768309-A	NR	1E-16		0.1088	[0.083-0.134] unit decrease	Affymetrix, Illumina [25775424] (imputed)	N
1331	chr7	97785499	97785500	rs34320230	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	7q21.3	NR	rs34320230-T	NR	4E-8		5.484	z score increase	Affymetrix [10847151] (imputed)	N
1331	chr7	97788808	97788809	rs17169406	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	7q21.3	NR	rs17169406-C	NR	1E-16		0.0289	[0.022-0.036] unit decrease	Affymetrix [9000000] (imputed)	N
1331	chr7	97806670	97806671	rs117674721	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	7q21.3	NR	rs117674721-C	NR	7E-10		0.0555	[0.038-0.073] unit decrease	Affymetrix [9000000] (imputed)	N
1331	chr7	97816326	97816327	rs6465657	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Prostate cancer	7,438 White British ancestry cases, 118,206 White British ancestry controls	NA	7q21.3		rs6465657-?	NR	7E-11		1.11893	[1.09-1.15]	NR [680312]	N
1331	chr7	97816326	97816327	rs6465657	33293427	Emami NC	2020-12-08	Cancer Res	A large-scale association study detects novel rare variants, risk genes, functional elements, and polygenic architecture of prostate cancer susceptibility.	Prostate cancer	14,113 European ancestry cases, 194,140 European ancestry controls	NA	7q21.3	NR	rs6465657-C	NR	1E-14		1.12	NR	Affymetrix [at least 232408] (imputed)	N
1331	chr7	97816326	97816327	rs6465657	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	7q21.3	NR	rs6465657-C	0.46	7E-37		1.11	[1.09-1.12]	Illumina [20370935] (imputed)	N
1331	chr7	97816326	97816327	rs6465657	19767753	Eeles RA	2009-09-20	Nat Genet	Identification of seven new prostate cancer susceptibility loci through a genome-wide association study.	Prostate cancer	1,854 European ancestry cases, 1,894 European ancestry controls	19,879 cases and 18,761 controls of European, East Asian, African American, Latino, and Hawaiian ancestry	7q21.3	NR	rs6465657-?	NR	2E-8				Illumina [541129]	N
1331	chr7	97816326	97816327	rs6465657	18264097	Eeles RA	2008-02-10	Nat Genet	Multiple newly identified loci associated with prostate cancer susceptibility.	Prostate cancer	1,854 European ancestry cases, 1,894 European ancestry controls	3,268 European ancestry cases, 3,366 European ancestry controls	7q21.3	LMTK2	rs6465657-C	0.46	1E-9		1.12	[1.05-1.20]	Illumina [541129]	N
1331	chr7	97816637	97816638	rs6465658	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Prostate cancer	10,792 European ancestry cases, 410,350 European ancestry controls	NA	7q21.3		rs6465658-G	NR	4E-12		1.1057	NR	Affymetrix [7846216] (imputed)	N
1331	chr7	97816637	97816638	rs6465658	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	7q21.3		rs6465658-G	NR	9E-9		1.105	[1.068-1.143]	Affymetrix [7846216] (imputed)	N
1331	chr7	97820108	97820109	rs773235052	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	7q21.3	LMTK2	rs773235052-C		1E-13		0.192	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
1331	chr7	97822114	97822115	rs11765552	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	7q21.3	NR	rs11765552-A	0.54	2E-17		0.0154	[0.012-0.019] unit increase	NR [NR]	N
1331	chr7	97826231	97826232	rs1495525	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	133,471 East Asian ancestry individuals	NA	7q21.3		rs1495525-A	0.518193	3E-13		0.0253066	[0.018-0.032] unit decrease	Illumina [13476165] (imputed)	N
1331	chr7	97826231	97826232	rs1495525	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Gamma glutamyl transferase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	7q21.3	LMTK2	rs1495525-?		4E-9		0.0234	[0.016-0.031] unit increase	Illumina [31500000] (imputed)	N
1331	chr7	97826231	97826232	rs1495525	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Gamma glutamyl transferase levels	118,309 Japanese ancestry individuals	NA	7q21.3	LMTK2	rs1495525-?	NR	4E-12		0.02817	[0.02-0.036] unit decrease novel	Illumina [6108953] (imputed)	N
1331	chr7	97840737	97840738	rs140409516	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	7q21.3		rs140409516-G	NR	4E-15		0.0277	[0.021-0.035] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
1331	chr7	97845712	97845713	rs11551890	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	7q21.3	TECPR1	rs11551890-A	0.4878	2E-9		0.0238	[0.016-0.032] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1331	chr7	97845712	97845713	rs11551890	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	7q21.3	TECPR1	rs11551890-A	0.5087	2E-8		0.02308	[0.015-0.031] mg/dL increase	Affymetrix, Illumina [8217339] (imputed)	N
1331	chr7	97845712	97845713	rs11551890	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	7q21.3	NR	rs11551890-A	0.4905	8E-7	(men)	0.0336	[0.02-0.047] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1331	chr7	97873993	97873994	rs1874344	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	7q21.3		rs1874344-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1331	chr7	97877992	97877993	rs72145133	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	7q21.3		rs72145133-G	NR	2E-9		0.0165	[0.011-0.022] unit decrease	Affymetrix, Illumina [20521447] (imputed)	N
1331	chr7	97889757	97889758	rs7794187	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q21.3	NR	rs7794187-C	0.438049	1E-15				Affymetrix, Illumina [23467995] (imputed)	N
1331	chr7	97897759	97897760	rs59597713	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	7q21.3		rs59597713-A	NR	5E-14		0.019	[0.014-0.024] unit decrease	Affymetrix, Illumina [20535842] (imputed)	N
1331	chr7	97898810	97898810	rs34838763	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	7q21.3	BRI3	rs34838763-CT	0.491824	2E-13		0.016416088	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1331	chr7	97898810	97898810	rs34838763	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	7q21.3	NR	rs34838763-I	0.491769	3E-18		0.017658	[0.014-0.022] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1331	chr7	97901621	97901622	rs58477839	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	7q21.3		rs58477839-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1332	chr7	97911617	97911618	rs111849767	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	7q21.3		rs111849767-A	NR	4E-9		0.0138	[0.0093-0.0183] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
1332	chr7	97915634	97915635	rs6950023	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	7q21.3	NR	rs6950023-G	0.814365	2E-101		0.0304737	[0.028-0.033] unit increase	Affymetrix [16582621] (imputed)	N
1332	chr7	97915634	97915635	rs6950023	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	7q21.3	NR	rs6950023-G	0.814365	1E-95		0.0316741	[0.029-0.035] unit increase	Affymetrix [16582614] (imputed)	N
1332	chr7	97915634	97915635	rs6950023	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	7q21.3	NR	rs6950023-T	0.185164	1E-12		0.0180401	[0.013-0.023] unit increase	Affymetrix [16583148] (imputed)	N
1332	chr7	97920622	97920623	rs7015	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	7q21.3	NR	rs7015-G	0.814541	8E-49		0.0558943	[0.048-0.064] unit increase	Affymetrix [16577313] (imputed)	N
1332	chr7	97920622	97920623	rs7015	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	7q21.3	NR	rs7015-G	0.814835	2E-232		0.0339417	[0.032-0.036] unit increase	Affymetrix [16582909] (imputed)	N
1332	chr7	97920622	97920623	rs7015	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	7q21.3	NR	rs7015-G	0.814835	2E-195		0.0349643	[0.033-0.037] unit increase	Affymetrix [16582965] (imputed)	N
1332	chr7	97924553	97924554	rs77443149	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	7q21.3	BAIAP2L1	rs77443149-A	0.039	8E-6	(MCP1 )	0.04	[NR] pg/mL increase	Illumina [899892]	N
1332	chr7	97931900	97931912	rs150628574	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	7q21.3	BRI3, BAIAP2L1	rs150628574-G	0.492644	3E-20		0.02042282	[0.016-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1332	chr7	97933600	97933601	rs1045916	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	7q21.3		rs1045916-T	NR	9E-10		0.015	[0.01-0.02] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
1332	chr7	97933600	97933601	rs1045916	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	7q21.3	BAIAP2L1	rs1045916-T	0.749876	2E-12		0.018224046	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1332	chr7	97933600	97933601	rs1045916	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	7q21.3	BAIAP2L1	rs1045916-T	0.749884	3E-17		0.021921603	[0.017-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1332	chr7	97933600	97933601	rs1045916	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	7q21.3	NR	rs1045916-T	0.747585	1E-11		0.01483	[0.011-0.019] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1332	chr7	97933600	97933601	rs1045916	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q21.3	NR	rs1045916-T	0.723805	4E-14				Affymetrix, Illumina [23114412] (imputed)	N
1332	chr7	97933600	97933601	rs1045916	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	7q21.3	NR	rs1045916-T	0.74791	8E-17		0.018992	[0.015-0.023] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
1332	chr7	97933600	97933601	rs1045916	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	7q21.3		rs1045916-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1332	chr7	97933854	97933855	rs7802541	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	7q21.3	BRI3, BAIAP2L1	rs7802541-A	0.498741	7E-15		0.017250106	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1332	chr7	97943845	97943846	rs35937832	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	7q21.3		rs35937832-A	NR	4E-8		0.022	[0.014-0.03] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
1332	chr7	97946299	97946299	rs34785619	34337532	Fantus RJ	2021-05-25	Eur Urol Open Sci	Genetic Susceptibility for Low Testosterone in Men and Its Implications in Biology and Screening: Data from the UK Biobank.	Low testosterone levels	13,409 European ancestry male cases, 98,267 European ancestry male controls	4,426 European ancestry male cases, 32,800 European ancestry male controls	7q21.3	NR	rs34785619-C	0.18	7E-13		1.11	NR	NR [8853336] (imputed)	N
1332	chr7	97957516	97957517	rs7807555	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	7q21.3	NR	rs7807555-A	0.493097	2E-11		0.012642	[0.0089-0.0163] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1332	chr7	97977267	97977268	rs112758337	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	7q21.3	BAIAP2L1	rs112758337-G	0.814459	2E-9		0.0162142	[0.011-0.021] unit increase	Affymetrix [NR] (imputed)	N
1332	chr7	97977267	97977268	rs112758337	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	7q21.3	BAIAP2L1	rs112758337-G	0.814442	3E-15		0.0211918	[0.016-0.026] unit increase	Affymetrix [NR] (imputed)	N
1332	chr7	97984320	97984321	rs764029425	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	7q21.3	NR	rs764029425-TG	0.815776	5E-135		0.0378251	[0.035-0.041] unit increase	Affymetrix [16585854] (imputed)	N
1332	chr7	97984320	97984321	rs764029425	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	7q21.3	NR	rs764029425-TG	0.815776	3E-103		0.0382534	[0.035-0.042] unit increase	Affymetrix [16585866] (imputed)	N
1332	chr7	97984320	97984321	rs764029425	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	7q21.3	NR	rs764029425-T	0.184253	1E-29		0.0364696	[0.03-0.043] unit increase	Affymetrix [16585745] (imputed)	N
1332	chr7	97993361	97993362	rs3779195	22829776	Coviello AD	2012-07-19	PLoS Genet	A genome-wide association meta-analysis of circulating sex hormone-binding globulin reveals multiple Loci implicated in sex steroid hormone regulation.	Sex hormone-binding globulin levels	21,791 European ancestry individuals	8,175 European ancestry individuals	7q21.3	BAIAP2L1	rs3779195-A	0.17	3E-8	(Men + Women)	0.028	[0.018-0.038] umol/L decrease	Affymetrix, Illumina [2543887] (imputed)	N
1332	chr7	98005397	98005398	rs2107717	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	7q21.3	BAIAP2L1	rs2107717-T	0.320363	8E-16		0.00194979	[0.0015-0.0024] unit increase	Affymetrix [13995440] (imputed)	N
1332	chr7	98005616	98005617	rs6465679	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large HDL	115,082 European ancestry individuals	NA	7q21.3		rs6465679-A	0.243891	3E-8		0.0239661	[0.015-0.032] unit increase	NR [11722792] (imputed)	N
1332	chr7	98005616	98005617	rs6465679	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	7q21.3		rs6465679-A	0.243894	1E-9		0.0271083	[0.018-0.036] unit increase	NR [11722792] (imputed)	N
1332	chr7	98005616	98005617	rs6465679	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large HDL	115,082 European ancestry individuals	NA	7q21.3		rs6465679-A	0.243891	1E-8		0.0247294	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
1332	chr7	98005616	98005617	rs6465679	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	7q21.3		rs6465679-A	0.243891	2E-9		0.0256168	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
1332	chr7	98011240	98011240	rs35903783	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	7q21.3	NR	rs35903783-GT	0.790213	2E-18		0.0145777	[0.011-0.018] unit increase	Affymetrix [16578495] (imputed)	N
1332	chr7	98026554	98026556	rs79518236	32424353	Zhang H	2020-05-18	Nat Genet	Genome-wide association study identifies 32 novel breast cancer susceptibility loci from overall and subtype-specific analyses.	Invasive breast cancer	106,278 European ancestry cases, 91,477 European ancestry controls	NA	7q21.3	NR	rs79518236-?	NR	2E-8	(mixed effect)			Illumina [~ 9700000] (imputed)	N
1332	chr7	98026554	98026556	rs79518236	32424353	Zhang H	2020-05-18	Nat Genet	Genome-wide association study identifies 32 novel breast cancer susceptibility loci from overall and subtype-specific analyses.	Breast cancer	133,384 European ancestry cases, 113,789 European ancestry controls	NA	7q21.3	NR	rs79518236-ACT	0.77	7E-9		1.0416667	[1.03-1.05]	Illumina [~ 10800000] (imputed)	N
1332	chr7	98026554	98026556	rs79518236	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	7q21.3	NR	rs79518236-A	0.2327	1E-7	(EA)	0.0396	[0.025-0.054] unit decrease	Illumina [~ 11800000] (imputed)	N
1332	chr7	98034663	98034664	rs377584195	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	7q22.1	ATP5J2-PTCD1	rs377584195-?	NR	1E-12		0.0273	[0.021-0.034] unit decrease	Affymetrix [5701386] (imputed)	N
1332	chr7	98038350	98038351	rs57098456	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	7q22.1		rs57098456-G	0.321423	6E-10		0.014880833	[0.01-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1332	chr7	98039845	98039846	rs1688605	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	7q22.1	NR	rs1688605-A	NR	2E-9		0.0214	[0.015-0.028] unit increase	Affymetrix [9000000] (imputed)	N
1332	chr7	98039845	98039846	rs1688605	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Testosterone levels	310,461 European ancestry individuals, 5,453 African ancestry individuals, 6,680 South Asian ancestry individuals	NA	7q22.1	NR	rs1688605-A	NR	1E-9		0.0225	[0.015-0.03] unit increase	Affymetrix [9000000] (imputed)	N
1332	chr7	98039845	98039846	rs1688605	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	7q22.1	NR	rs1688605-A	NR	1E-76		0.0687	[0.061-0.076] unit increase	Affymetrix [9000000] (imputed)	N
1333	chr7	98092367	98092368	rs903453	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	7q22.1	NR	rs903453-C	NR	6E-25		0.0508	[0.041-0.06] unit increase	Affymetrix [9000000] (imputed)	N
1333	chr7	98131933	98131934	rs74299628	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs non-severe)	86 Finnish ancestry male severe erosion cases, 50 Finnish ancestry female severe erosion cases, 817 Finnish ancestry male non-severe erosion controls, 991 Finnish ancestry female non-severe erosion controls	NA	7q22.1	NR	rs74299628-?	NR	5E-6				Illumina [NR] (imputed)	N
1333	chr7	98131933	98131934	rs74299628	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Pursuit maintenance gain	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	7q22.1	BAIAP2L1	rs74299628-C	0.04026	9E-6				Illumina [4404269] (imputed)	N
1333	chr7	98135867	98135868	rs4729453	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs non-severe)	86 Finnish ancestry male severe erosion cases, 50 Finnish ancestry female severe erosion cases, 817 Finnish ancestry male non-severe erosion controls, 991 Finnish ancestry female non-severe erosion controls	NA	7q22.1	NR	rs4729453-?	NR	4E-6				Illumina [NR] (imputed)	N
1333	chr7	98137403	98137404	rs74367702	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs non-severe)	86 Finnish ancestry male severe erosion cases, 50 Finnish ancestry female severe erosion cases, 817 Finnish ancestry male non-severe erosion controls, 991 Finnish ancestry female non-severe erosion controls	NA	7q22.1	NR	rs74367702-?	NR	4E-6				Illumina [NR] (imputed)	N
1333	chr7	98140173	98140174	rs142769292	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs non-severe)	86 Finnish ancestry male severe erosion cases, 50 Finnish ancestry female severe erosion cases, 817 Finnish ancestry male non-severe erosion controls, 991 Finnish ancestry female non-severe erosion controls	NA	7q22.1	NR	rs142769292-?	NR	3E-6				Illumina [NR] (imputed)	N
1333	chr7	98146452	98146453	rs12537668	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs non-severe)	86 Finnish ancestry male severe erosion cases, 50 Finnish ancestry female severe erosion cases, 817 Finnish ancestry male non-severe erosion controls, 991 Finnish ancestry female non-severe erosion controls	NA	7q22.1	NR	rs12537668-?	NR	4E-6				Illumina [NR] (imputed)	N
1333	chr7	98172164	98172165	rs7788604	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7q22.1	NR	rs7788604-A	0.01742	8E-9	(SAR1A)	0.0412	NR unit decrease	Illumina [1671387] (imputed)	N
1333	chr7	98172164	98172165	rs7788604	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7q22.1	NR	rs7788604-A	0.01742	1E-8	(PSMD1)	0.0629	NR unit decrease	Illumina [1671387] (imputed)	N
1335	chr7	98432606	98432607	rs13241771	31289819	Fitzgerald KC	2019-09-01	Brain	Early complement genes are associated with visual system degeneration in multiple sclerosis.	Decreased low contrast letter acuity in multiple sclerosis	582 European and unknown ancestry individuals	253 European and unknown ancestry individuals	7q22.1	TMEM130	rs13241771-A	0.16	7E-7		1.77	[1.47-2.12]	Illumina [5258576] (imputed)	N
1336	chr7	98475822	98475823	rs746441804	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	7q22.1	TRRAP	rs746441804-A		1E-13		0.262	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
1336	chr7	98495407	98495408	rs55702649	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	7q22.1	TRRAP	rs55702649-C	0.042287	4E-13		0.040092386	[0.029-0.051] unit decrease	Affymetrix [93095623] (imputed)	N
1336	chr7	98495407	98495408	rs55702649	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	7q22.1		rs55702649-?	NR	9E-17				NR [~ 8900000] (imputed)	N
1336	chr7	98511864	98511865	rs6465732	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	7q22.1	TRRAP	rs6465732-T	0.505972	1E-18		0.020456024	[0.016-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1336	chr7	98517116	98517117	rs62472014	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	7q22.1		rs62472014-C	0.966	9E-14		0.23	[0.17-0.29] % increase	Affymetrix [NR] (imputed)	N
1336	chr7	98517116	98517117	rs62472014	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	7q22.1		rs62472014-?	NR	9E-12				NR [~ 8900000] (imputed)	N
1336	chr7	98526556	98526557	rs139472942	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	7q22.1	TRRAP	rs139472942-T	0.018081	5E-17		0.07111396	[0.054-0.088] unit decrease	Affymetrix [93095623] (imputed)	N
1336	chr7	98526556	98526557	rs139472942	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	7q22.1	TRRAP	rs139472942-T	0.018043	3E-18		0.07439855	[0.058-0.091] unit decrease	Affymetrix [93095623] (imputed)	N
1336	chr7	98526556	98526557	rs139472942	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	7q22.1	TRRAP	rs139472942-T	0.018096	7E-15		0.061043	[0.046-0.076] unit decrease	Affymetrix [93095623] (imputed)	N
1336	chr7	98526556	98526557	rs139472942	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	7q22.1	TRRAP	rs139472942-T	0.0180940000000001	4E-13		0.060144633	[0.044-0.076] unit decrease	Affymetrix [93095623] (imputed)	N
1336	chr7	98526556	98526557	rs139472942	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	7q22.1	TRRAP	rs139472942-T	0.0179	2E-9		0.08025213	[0.054-0.107] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1336	chr7	98546717	98546718	rs113940700	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	7q22.1		rs113940700-?	NR	1E-11				NR [~ 8900000] (imputed)	N
1337	chr7	98585151	98585152	rs219818	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	7q22.1	TRRAP	rs219818-T	0.00686500000000001	2E-9		0.08148228	[0.055-0.108] unit increase	Affymetrix [93095623] (imputed)	N
1337	chr7	98611364	98611365	rs149211972	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	7q22.1	AC004893.11	rs149211972-T	0.030881	2E-19		0.05998775	[0.047-0.073] unit decrease	Affymetrix [93095623] (imputed)	N
1337	chr7	98611364	98611365	rs149211972	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	7q22.1	AC004893.11	rs149211972-T	0.030864	2E-23		0.0666659	[0.054-0.08] unit decrease	Affymetrix [93095623] (imputed)	N
1337	chr7	98611364	98611365	rs149211972	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	7q22.1	AC004893.11	rs149211972-T	0.03087	7E-12		0.0577183	[0.046-0.07] unit decrease	Affymetrix [93095623] (imputed)	N
1337	chr7	98649627	98649628	rs2008258	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	7q22.1	SMURF1	rs2008258-G	0.501385	3E-13		0.016745439	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1337	chr7	98666496	98666501	rs145469380	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	7q22.1	SMURF1	rs145469380-C	0.560085	1E-9		0.0202216	[0.016-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1337	chr7	98682522	98682523	rs11972846	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	7q22.1	SMURF1	rs11972846-G	0.571879	3E-11		0.014946542	[0.011-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
1338	chr7	98723899	98723900	rs573383551	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	7q22.1	NR	rs573383551-A	0.996249	7E-11		0.104067	[0.073-0.135] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
1338	chr7	98746400	98746401	rs12534399	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7q22.1		rs12534399-?	NR	2E-15				NR [~ 8900000] (imputed)	N
1338	chr7	98750378	98750379	rs2395022	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	7q22.1	NR	rs2395022-?	NR	9E-15	(EA)			Affymetrix, Illumina [~ 9000000] (imputed)	N
1338	chr7	98753731	98753732	rs183360924	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	7q22.1	intergenic	rs183360924-G		1E-12		0.344	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
1338	chr7	98756596	98756597	rs6956283	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	7q22.1		rs6956283-?	NR	6E-13				NR [~ 8900000] (imputed)	N
1338	chr7	98756596	98756597	rs6956283	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	7q22.1		rs6956283-T	0.7342	6E-10		0.0098	[0.0067-0.0129] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1338	chr7	98756596	98756597	rs6956283	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	7q22.1	Intergenic	rs6956283-T	0.7342	4E-10	(MTAG)	0.0092	[0.0063-0.0121] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1338	chr7	98759116	98759117	rs9297145	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Ulcerative colitis	12,366 European and unknown ancestry cases, 33,609 European and unknown ancestry controls	NA	7q22.1	KPNA7, SMURF1	rs9297145-?		7E-7				Illumina [9578670] (imputed)	N
1338	chr7	98759116	98759117	rs9297145	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	7q22.1	KPNA7, SMURF1	rs9297145-?		8E-9				Illumina [9725440] (imputed)	N
1338	chr7	98759116	98759117	rs9297145	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	7q22.1	intergenic	rs9297145-?	NR	1E-8	(subset analysis)			Illumina [130052]	N
1338	chr7	98759116	98759117	rs9297145	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	7q22.1	NR	rs9297145-C	0.2581	4E-7	(EA)	1.073924	[1.05-1.1]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1338	chr7	98759116	98759117	rs9297145	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	7q22.1	NR	rs9297145-C	0.2581	4E-8	(EA)	1.0761806	[1.05-1.1]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1338	chr7	98759116	98759117	rs9297145	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	7q22.1	SMURF1	rs9297145-C	0.265	8E-12		1.082	[1.047-1.117]	Affymetrix, Illumina [1230000] (imputed)	N
1338	chr7	98760503	98760504	rs7809799	20228798	Franke A	2010-03-14	Nat Genet	Genome-wide association study for ulcerative colitis identifies risk loci at 7q22 and 22q13 (IL17REL).	Ulcerative colitis	1,043 European ancestry cases, 1,703 European ancestry controls	2,539 European ancestry cases, 5,428 European ancestry controls	7q22.1	SMURF1, KPNA7	rs7809799-G	0.04	9E-11		1.56	[1.36-1.78]	Affymetrix [1897764] (imputed)	N
1338	chr7	98761001	98761006	rs201973602	30718321	Sanchez-Roige S	2019-02-04	J Neurosci	Genome-wide association studies of impulsive personality traits (BIS-11 and UPPSP) and drug experimentation in up to 22,861 adult research participants identify loci in the CACNA1I and CADM2 genes.	Lack of premeditation	22,774 European ancestry individuals	NA	7q22.1	SMURF1, KPNA7	rs201973602-?	0.8869	2E-6		0.069	[0.097-0.041] unit decrease	Illumina [11455628] (imputed)	N
1338	chr7	98765604	98765604	rs5886095	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	7q22.1		rs5886095-TC	0.9611565	8E-10		0.0355521	[0.024-0.047] unit decrease	Affymetrix [93095623] (imputed)	N
1338	chr7	98769024	98769025	rs4236540	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	7q22.1		rs4236540-T	NR	2E-11		0.0128	[0.0091-0.0165] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
1338	chr7	98769024	98769025	rs4236540	29679657	Ferreira MA	2018-04-18	J Allergy Clin Immunol	Eleven loci with new reproducible genetic associations with allergic disease risk.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	7q22.1	AC004893.11	rs4236540-T	0.7143	8E-7	(conditional)	0.0282	NR unit decrease	NR [NR]	N
1338	chr7	98778221	98778222	rs56072276	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	7q22.1	KPNA7	rs56072276-A	0.688483	3E-11		0.01604808	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1338	chr7	98778221	98778222	rs56072276	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q22.1	NR	rs56072276-A	0.678353	7E-13				Affymetrix, Illumina [19872809] (imputed)	N
1338	chr7	98778221	98778222	rs56072276	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	7q22.1	NR	rs56072276-A	0.688278	7E-13		0.015995	[0.012-0.02] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
1338	chr7	98782274	98782275	rs35236657	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Chronic lymphocytic leukemia	764 White British ancestry cases, 272,079 White British ancestry controls	NA	7q22.1		rs35236657-?	NR	5E-6		1.48709	[1.32-1.66]	NR [663083]	N
1338	chr7	98784245	98784246	rs12532625	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	7q22.1		rs12532625-?	NR	6E-9				NR [~ 8900000] (imputed)	N
1338	chr7	98810483	98810484	rs112689157	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	7q22.1	KPNA7	rs112689157-A	0.9941	9E-6		0.2584	[0.14-0.37] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1338	chr7	98810556	98810557	rs12705054	28608620	Coleman JRI	2017-06-13	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of facial emotion recognition in children and association with polygenic risk for mental health disorders.	Facial emotion recognition (sad faces)	4,097 European ancestry individuals	NA	7q22.1	SMURF1, KPNA7, MYH16, ARPC1A, ARPC1B, ARC41, PDAP1, BUD31, PTCD1, CPSF4, ATP5J2, ZNF789, ZNF394, ZKSCAN5, KIAA1015, C7orf38	rs12705054-A	0.9364	3E-6		4.65	z score decrease	Illumina [2487351] (imputed)	N
1339	chr7	98861215	98861216	rs111643567	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Testosterone levels	310,461 European ancestry individuals, 5,453 African ancestry individuals, 6,680 South Asian ancestry individuals	NA	7q22.1	NR	rs111643567-T	NR	2E-16		0.1121	[0.085-0.139] unit decrease	Affymetrix [9000000] (imputed)	N
1339	chr7	98877266	98877267	rs11769461	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Testosterone levels	310,461 European ancestry individuals, 5,453 African ancestry individuals, 6,680 South Asian ancestry individuals	NA	7q22.1	NR	rs11769461-A	NR	3E-14		0.0589	[0.044-0.074] unit decrease	Affymetrix [9000000] (imputed)	N
1339	chr7	98898766	98898767	rs10267346	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol consumption (drinks per week) (MTAG)	972,915 European ancestry individuals	NA	7q22.1	NR	rs10267346-C	0.169	2E-9		0.0144452425	[0.0097-0.0192] unit decrease	Affymetrix [NR] (imputed)	N
1339	chr7	98931104	98931105	rs2301889	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	7q22.1	ARPC1A	rs2301889-A	0.9312	8E-6		0.0119	[0.0066-0.0172] unit decrease	Affymetrix, Illumina [33811881] (imputed)	N
1339	chr7	98931104	98931105	rs2301889	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	7q22.1		rs2301889-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1339	chr7	98931657	98931658	rs200984644	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	7q22.1	NR	rs200984644-G	0.063614	4E-23		0.039649	[0.032-0.047] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1339	chr7	98932758	98932759	rs147642358	25935875	Varenhorst C	2015-05-02	Eur Heart J	Effect of genetic variations on ticagrelor plasma levels and clinical outcomes.	Ticagrelor levels in individuals with acute coronary syndromes treated with ticagrelor	1,794 European ancestry cases, 18 African and Asian ancestry cases	1,922 European ancestry cases, 19 African and Asian ancestry cases	7q22.1	ARPC1A, MYH16	rs147642358-G	0.022	6E-12		0.25	[0.18-0.32] unit increase	Illumina [10962468] (imputed)	N
1339	chr7	98945907	98945908	rs3801288	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Problematic alcohol use (MTAG)	972,915 European ancestry individuals	NA	7q22.1	NR	rs3801288-G	0.1288	7E-9		0.020856725	[0.014-0.028] unit decrease	Affymetrix [10613246] (imputed)	N
1339	chr7	98953862	98953863	rs17161692	23093944	Krumsiek J	2012-10-18	PLoS Genet	Mining the unknown: a systems approach to metabolite identification combining genetic and metabolic information.	Serum metabolite levels	1,678 European ancestry individuals	NA	7q22.1	ARPC1A, CPSF4	rs17161692-?	NR	6E-32	(X-12063)	0.2168	[NR] unit decrease	Affymetrix [655658]	N
1339	chr7	98956754	98956755	rs73395580	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q22.1	NR	rs73395580-T	0.105427	2E-22				Affymetrix, Illumina [23472807] (imputed)	N
1339	chr7	98957879	98957880	rs740160	21533175	Zhai G	2011-04-14	PLoS Genet	Eight common genetic variants associated with serum DHEAS levels suggest a key role in ageing mechanisms.	Dehydroepiandrosterone sulphate levels	14,846 European ancestry individuals	NA	7q22.1	ARPC1A	rs740160-T	0.05	2E-16		0.15	[0.11-0.19] umol/L increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1340	chr7	98965614	98965615	rs143524414	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls, 49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	7q22.1		rs143524414-A	NR	2E-8		0.083	[0.054-0.112] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1340	chr7	98965614	98965615	rs143524414	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	7q22.1		rs143524414-A	NR	3E-8		0.064	[0.041-0.087] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1340	chr7	98965614	98965615	rs143524414	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	DHEAS levels	4,301 European ancestry men, 3,358 European ancestry women	NA	7q22.1	NR	rs143524414-A	0.069	5E-14		0.15273	[0.11-0.19] unit decrease	Affymetrix [up to 8900000] (imputed)	N
1340	chr7	98965614	98965615	rs143524414	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	DHEAS levels	4,301 European ancestry men, 3,358 European ancestry women	NA	7q22.1	NR	rs143524414-A	0.069	3E-6	(women)	0.151289	[0.088-0.215] unit decrease	Affymetrix [up to 8900000] (imputed)	N
1340	chr7	98965614	98965615	rs143524414	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	DHEAS levels	4,301 European ancestry men, 3,358 European ancestry women	NA	7q22.1	NR	rs143524414-A	0.068	1E-9	(men)	0.155228	[0.11-0.21] unit decrease	Affymetrix [up to 8900000] (imputed)	N
1340	chr7	98965614	98965615	rs143524414	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls	NA	7q22.1	ARPC1A	rs143524414-A	0.0650858	5E-8		0.089636154	[0.057-0.122] unit decrease	Affymetrix [7288503] (imputed)	N
1340	chr7	98975257	98975258	rs117370443	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	7q22.1		rs117370443-C	NR	1E-20		0.0553	[0.044-0.067] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
1340	chr7	98975257	98975258	rs117370443	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	7q22.1	ARPC1B, ARPC1A	rs117370443-C	0.038961	4E-20		0.053566698	[0.042-0.065] unit decrease	Affymetrix [93095623] (imputed)	N
1340	chr7	98975257	98975258	rs117370443	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	7q22.1	ARPC1B, ARPC1A	rs117370443-C	0.038957	9E-28		0.063460656	[0.052-0.075] unit decrease	Affymetrix [93095623] (imputed)	N
1340	chr7	98975257	98975258	rs117370443	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	7q22.1	ARPC1B, ARPC1A	rs117370443-C	0.038968	8E-20		0.05261753	[0.041-0.064] unit decrease	Affymetrix [93095623] (imputed)	N
1340	chr7	98975257	98975258	rs117370443	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	7q22.1	ARPC1B, ARPC1A	rs117370443-C	0.038965	2E-26		0.061569262	[0.05-0.073] unit decrease	Affymetrix [93095623] (imputed)	N
1340	chr7	98977514	98977515	rs10236149	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	7q22.1	NR	rs10236149-G	0.123	4E-13		0.0146241	[0.011-0.019] unit decrease	NR [~ 9732723] (imputed)	N
1340	chr7	98977514	98977515	rs10236149	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week)	up to 941,280 European ancestry individuals	NA	7q22.1	NR	rs10236149-G	0.123	1E-9		0.013498145	[0.0091-0.0178] unit decrease	NR [~ 10000000] (imputed)	N
1340	chr7	98980878	98980879	rs10249167	31358974	Evangelou E	2019-07-29	Nat Hum Behav	New alcohol-related genes suggest shared genetic mechanisms with neuropsychiatric disorders.	Alcohol consumption	480,842 European ancestry individuals	NA	7q22.1	ARPC1B, ARPC1A	rs10249167-A	0.87	3E-10		0.01	[0.0061-0.0139] unit increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1340	chr7	98983702	98983703	rs150507409	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	DHEAS levels	4,301 European ancestry men, 3,358 European ancestry women	NA	7q22.1	NR	rs150507409-A	0.056	2E-9		0.139681	[0.094-0.185] unit decrease	Affymetrix [up to 8900000] (imputed)	N
1340	chr7	98983702	98983703	rs150507409	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	DHEAS levels	4,301 European ancestry men, 3,358 European ancestry women	NA	7q22.1	NR	rs150507409-A	0.055	9E-8	(men)	0.155804	[0.099-0.213] unit decrease	Affymetrix [up to 8900000] (imputed)	N
1340	chr7	98984212	98984213	rs28377312	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	7,894 Sub-Saharan African ancestry individuals	NA	7q22.1		rs28377312-G	0.912677	5E-6		0.0152967	[0.0087-0.0219] unit increase	Illumina [13900000] (imputed)	N
1340	chr7	98995464	98995465	rs140429100	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	7q22.1		rs140429100-?	NR	1E-12				NR [~ 8900000] (imputed)	N
1340	chr7	98995464	98995465	rs140429100	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	7q22.1		rs140429100-?	NR	2E-14				NR [~ 8900000] (imputed)	N
1340	chr7	98998973	98998975	rs72264263	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	7q22.1	PDAP1	rs72264263-C	0.041539	3E-13		0.04174811	[0.031-0.053] unit increase	Affymetrix [93095623] (imputed)	N
1340	chr7	99019564	99019565	rs77356530	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	DHEAS levels	4,301 European ancestry men, 3,358 European ancestry women	NA	7q22.1	NR	rs77356530-A	0.017	3E-8	(women)	0.368652	[0.24-0.5] unit decrease	Affymetrix [up to 8900000] (imputed)	N
1340	chr7	99019564	99019565	rs77356530	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	DHEAS levels	4,301 European ancestry men, 3,358 European ancestry women	NA	7q22.1	NR	rs77356530-A	0.017	3E-13	(men)	0.395127	[0.29-0.5] unit decrease	Affymetrix [up to 8900000] (imputed)	N
1340	chr7	99019564	99019565	rs77356530	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	DHEAS levels	4,301 European ancestry men, 3,358 European ancestry women	NA	7q22.1	NR	rs77356530-A	0.017	1E-19		0.385515	[0.3-0.47] unit decrease	Affymetrix [up to 8900000] (imputed)	N
1340	chr7	99020805	99020806	rs917154	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	7q22.1		rs917154-G	NR	2E-12		0.0165	[0.012-0.021] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1340	chr7	99023460	99023461	rs2404324	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Smoking status (ever vs never smokers)	336,066 British ancestry individuals	NA	7q22.1	NR	rs2404324-A	0.8453	4E-8		1.0387452	NR	NR [8968716] (imputed)	N
1340	chr7	99025606	99025607	rs11979174	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	7q22.1		rs11979174-C	NR	2E-10		0.0155	[0.011-0.02] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
1340	chr7	99030227	99030228	rs12538826	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		7q22.1	PTCD1	rs12538826-T	0.885558	7E-15		0.0167586	[0.013-0.021] unit increase	Affymetrix [12370749]	N
1340	chr7	99032398	99032399	rs11973173	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	7q22.1		rs11973173-G	NR	5E-13		0.0297	[0.022-0.038] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1340	chr7	99036919	99036920	rs10215854	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	7q22.1		rs10215854-?	NR	2E-16				NR [~ 8900000] (imputed)	N
1340	chr7	99039313	99039313	rs34022779	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	DHEAS levels	4,301 European ancestry men, 3,358 European ancestry women	NA	7q22.1	NR	rs34022779-AT	0.092	8E-7	(women)	0.137454	[0.083-0.192] unit decrease	Affymetrix [up to 8900000] (imputed)	N
1340	chr7	99039313	99039313	rs34022779	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	DHEAS levels	4,301 European ancestry men, 3,358 European ancestry women	NA	7q22.1	NR	rs34022779-AT	0.092	5E-8	(men)	0.118528	[0.076-0.161] unit decrease	Affymetrix [up to 8900000] (imputed)	N
1340	chr7	99039313	99039313	rs34022779	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	DHEAS levels	4,301 European ancestry men, 3,358 European ancestry women	NA	7q22.1	NR	rs34022779-AT	0.092	2E-13		0.128029	[0.094-0.162] unit decrease	Affymetrix [up to 8900000] (imputed)	N
1340	chr7	99047977	99047978	rs883403	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	7q22.1	ATP5J2	rs883403-T	0.8426	3E-10		0.017332198	[0.012-0.023] unit increase	Affymetrix [11514654] (imputed)	N
1340	chr7	99052427	99052428	rs3779354	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	7q22.1	ATP5J2, ATP5J2-PTCD1, CPSF4, PTCD1	rs3779354-C	0.0631040000000001	2E-15		0.03601081	[0.027-0.045] unit decrease	Affymetrix [93095623] (imputed)	N
1340	chr7	99052427	99052428	rs3779354	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	7q22.1	ATP5J2, ATP5J2-PTCD1, CPSF4, PTCD1	rs3779354-C	0.063091	4E-16		0.036994528	[0.028-0.046] unit increase	Affymetrix [93095623] (imputed)	N
1340	chr7	99053313	99053314	rs13243267	23093944	Krumsiek J	2012-10-18	PLoS Genet	Mining the unknown: a systems approach to metabolite identification combining genetic and metabolic information.	Serum metabolite levels	1,678 European ancestry individuals	NA	7q22.1	ARPC1A, BUD31, CPSF4, PDAP1, ZKSCAN5, ZNF655, ZNF789	rs13243267-?	NR	4E-11	(androsteronesulfate)	0.1191	[NR] unit decrease	Affymetrix [655658]	N
1340	chr7	99057700	99057701	rs2293256	23093944	Krumsiek J	2012-10-18	PLoS Genet	Mining the unknown: a systems approach to metabolite identification combining genetic and metabolic information.	Serum metabolite levels	1,678 European ancestry individuals	NA	7q22.1	ARPC1B, ATP5J2, BUD31, CYP3A5, PDAP1, ZNF498, ZNF655	rs2293256-?	NR	4E-21	(X-12063)	0.2122	[NR] unit decrease	Affymetrix [655658]	N
1340	chr7	99071477	99071478	rs13437771	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	7q22.1	NR	rs13437771-G	0.155	1E-14		0.027109828	[0.02-0.034] unit decrease	NR [~ 10000000] (imputed)	N
1340	chr7	99075037	99075038	rs148982377	26014426	Ruth KS	2015-05-27	Eur J Hum Genet	Genome-wide association study with 1000 genomes imputation identifies signals for nine sex hormone-related phenotypes.	Sex hormone levels	up to 2913 European ancestry individuals	NA	7q22.1	ZNF789	rs148982377-C	0.038	5E-7	(Testosterone)	0.203	[NR] unit decrease	Illumina [7879351] (imputed)	N
1340	chr7	99075037	99075038	rs148982377	26014426	Ruth KS	2015-05-27	Eur J Hum Genet	Genome-wide association study with 1000 genomes imputation identifies signals for nine sex hormone-related phenotypes.	Sex hormone levels	up to 2913 European ancestry individuals	NA	7q22.1	ZNF789	rs148982377-C	0.038	3E-13	(Progesterone)	0.331	[NR] unit decrease	Illumina [7879351] (imputed)	N
1340	chr7	99075037	99075038	rs148982377	26014426	Ruth KS	2015-05-27	Eur J Hum Genet	Genome-wide association study with 1000 genomes imputation identifies signals for nine sex hormone-related phenotypes.	Sex hormone levels	up to 2913 European ancestry individuals	NA	7q22.1	ZNF789	rs148982377-C	0.038	2E-14	(DHEAS)	0.255	[NR] unit decrease	Illumina [7879351] (imputed)	N
1340	chr7	99075830	99075831	rs10235235	29293537	Gorlova OY	2018-01-02	PLoS One	Gene-level association analysis of systemic sclerosis: A comparison of African-Americans and White populations.	Diffuse cutaneous systemic sclerosis	574 European ancestry cases, 3,466 European ancestry controls, 201 African American cases, 260 African American controls	NA	7q22.1	ATP5J2, CPSF4	rs10235235-?		2E-6	(EA)			Illumina [~ 2500000] (imputed)	N
1340	chr7	99081729	99081730	rs6962772	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	7q22.1		rs6962772-A	0.846	8E-9		0.016	[0.01-0.022] unit increase	Affymetrix [up to 90000000] (imputed)	N
1340	chr7	99089382	99089382	rs540866996	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	7q22.1	ZNF394	rs540866996-G	0.845913	2E-15		0.0228296	[0.017-0.028] unit decrease	NR [16516521] (imputed)	N
1341	chr7	99094764	99094765	rs13438223	26423011	Wain LV	2015-09-27	Lancet Respir Med	Novel insights into the genetics of smoking behaviour, lung function, and chronic obstructive pulmonary disease (UK BiLEVE): a genetic association study in UK Biobank.	Smoking status (heavy vs never)	24,457 European ancestry heavy smokers, 24,474 European ancestry never smokers	NA	7q22.1	ZNF394	rs13438223-G	0.859	8E-8		1.1098778	[1.07-1.15]	Affymetrix [28509962] (imputed)	N
1341	chr7	99102776	99102777	rs2272168	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	7q22.1		rs2272168-G	0.843	3E-20		0.015	[0.011-0.019] unit increase	NR [NR] (imputed)	N
1341	chr7	99102910	99102911	rs11973801	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	7q22.1	NR	rs11973801-?	NR	2E-14				Affymetrix [~ 8270000] (imputed)	N
1341	chr7	99105675	99105676	rs138191091	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	7q22.1		rs138191091-A	0.877	1E-21		0.17	[0.13-0.2] % increase	Affymetrix [NR] (imputed)	N
1341	chr7	99106673	99106674	rs9656060	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	7q22.1	ZKSCAN5	rs9656060-T	0.089087	1E-9		0.02370604	[0.016-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
1341	chr7	99107726	99107727	rs3901286	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	7q22.1		rs3901286-?	NR	2E-19				NR [~ 8900000] (imputed)	N
1341	chr7	99115676	99115677	rs12533251	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	7q22.1	CYP3A5	rs12533251-A	0.09	2E-11	(X-18601)	0.057	[0.039-0.075] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
1341	chr7	99116896	99116897	rs536984886	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	7q22.1		rs536984886-A	NR	4E-11		0.0181	[0.013-0.023] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
1341	chr7	99118800	99118801	rs11761528	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Testosterone levels	310,461 European ancestry individuals, 5,453 African ancestry individuals, 6,680 South Asian ancestry individuals	NA	7q22.1	NR	rs11761528-T	NR	4E-52		0.0674	[0.059-0.076] unit decrease	Affymetrix [9000000] (imputed)	N
1341	chr7	99118800	99118801	rs11761528	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	7q22.1	NA	rs11761528-T	0.0874	6E-14		0.0227	[0.017-0.029] unit decrease	NR [~ 27400000] (imputed)	N
1341	chr7	99118800	99118801	rs11761528	21533175	Zhai G	2011-04-14	PLoS Genet	Eight common genetic variants associated with serum DHEAS levels suggest a key role in ageing mechanisms.	Dehydroepiandrosterone sulphate levels	14,846 European ancestry individuals	NA	7q22.1	ZKSCAN5	rs11761528-T	0.08	3E-36		0.16	[0.14-0.18] umol/L decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1341	chr7	99126639	99126640	rs3843540	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	7q22.1	ZKSCAN5	rs3843540-T	0.8514	2E-8		0.002	[0.0012-0.0028] unit decrease	Affymetrix [15275733] (imputed)	N
1341	chr7	99126815	99126816	rs187673688	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	7q22.1		rs187673688-?	NR	7E-9				NR [~ 8900000] (imputed)	N
1341	chr7	99130833	99130834	rs34670419	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	7q22.1		rs34670419-T	NR	1E-11		0.0353	[0.025-0.045] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
1341	chr7	99130833	99130834	rs34670419	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	7q22.1	ZKSCAN5	rs34670419-T	0.03	6E-18	(tauro-beta-muricholate)	1.245	[0.96-1.53] unit increase	Illumina [7750367] (imputed)	N
1341	chr7	99130833	99130834	rs34670419	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	7q22.1	ZKSCAN5	rs34670419-T	0.03	6E-12	(16a-hydroxy DHEA 3-sulfate)	1.515	[1.08-1.95] unit increase	Illumina [7750367] (imputed)	N
1341	chr7	99130833	99130834	rs34670419	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	7q22.1	ZKSCAN5	rs34670419-T	0.03	2E-12	(andro steroid monosulfate C19H28O6S (1))	1.162	[0.84-1.49] unit increase	Illumina [7750367] (imputed)	N
1341	chr7	99130833	99130834	rs34670419	30093612	O'Mara TA	2018-08-09	Nat Commun	Identification of nine new susceptibility loci for endometrial cancer.	Endometrial cancer	12,906 European ancestry cases, 108,979 European ancestry controls	NA	7q22.1	ZSCAN5, CYP3A7	rs34670419-G	0.96	3E-7		1.25	[1.15-1.36]	Affymetrix, Illumina [~ 11700000] (imputed)	N
1341	chr7	99130833	99130834	rs34670419	29499414	Pei YF	2018-02-27	Bone	Joint study of two genome-wide association meta-analyses identified 20p12.1 and 20q13.33 for bone mineral density.	Lumbar spine bone mineral density	up to 4,692 European ancestry individuals, up to 1,539 Han Chinese ancestry individuals, up to 849 African American individuals, up to 446 Hispanic individuals, 2,882 European ancestry whole-genome sequenced individuals, 3,549 European ancestry whole-exome sequenced individuals, 26,534 European ancestry non-array genotype imputed individuals	NA	7q22.1	ZKSCAN5	rs34670419-T	0.03883	1E-8		0.1218	[0.08-0.164] unit decrease	Affymetrix, Illumina [7998108] (imputed)	N
1341	chr7	99130833	99130834	rs34670419	29499414	Pei YF	2018-02-27	Bone	Joint study of two genome-wide association meta-analyses identified 20p12.1 and 20q13.33 for bone mineral density.	Femoral neck bone mineral density	up to 4,692 European ancestry individuals, up to 1,539 Han Chinese ancestry individuals, up to 849 African American individuals, up to 446 Hispanic individuals, 2,882 European ancestry whole-genome sequenced individuals, 3,549 European ancestry whole-exome sequenced individuals, 26,534 European ancestry non-array genotype imputed individuals	NA	7q22.1	ZKSCAN5	rs34670419-T	0.03883	8E-6		0.0839	[0.047-0.121] unit decrease	Affymetrix, Illumina [7998108] (imputed)	N
1341	chr7	99130833	99130834	rs34670419	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density (age over 60)	22,504 European ancestry and African American individuals	NA	7q22.1	NR	rs34670419-T	0.0387	1E-9		0.1603	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
1341	chr7	99130833	99130834	rs34670419	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	7q22.1	ZKSCAN5	rs34670419-T	0.0394	1E-8		0.088	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
1341	chr7	99130833	99130834	rs34670419	26014426	Ruth KS	2015-05-27	Eur J Hum Genet	Genome-wide association study with 1000 genomes imputation identifies signals for nine sex hormone-related phenotypes.	Sex hormone levels	up to 2913 European ancestry individuals	NA	7q22.1	ZKSCAN5, CYP3A4, CYP3A7	rs34670419-T	0.037	6E-14	(Progesterone)	0.346	[NR] unit decrease	Illumina [7879351] (imputed)	N
1341	chr7	99130833	99130834	rs34670419	26014426	Ruth KS	2015-05-27	Eur J Hum Genet	Genome-wide association study with 1000 genomes imputation identifies signals for nine sex hormone-related phenotypes.	Sex hormone levels	up to 2913 European ancestry individuals	NA	7q22.1	ZKSCAN5, CYP3A4, CYP3A7	rs34670419-T	0.037	2E-7	(Testosterone)	0.213	[NR] unit decrease	Illumina [7879351] (imputed)	N
1341	chr7	99130833	99130834	rs34670419	26014426	Ruth KS	2015-05-27	Eur J Hum Genet	Genome-wide association study with 1000 genomes imputation identifies signals for nine sex hormone-related phenotypes.	Sex hormone levels	up to 2913 European ancestry individuals	NA	7q22.1	ZKSCAN5, CYP3A4, CYP3A7	rs34670419-T	0.037	2E-14	(DHEAS)	0.259	[NR] unit decrease	Illumina [7879351] (imputed)	N
1341	chr7	99130833	99130834	rs34670419	23696881	Wood AR	2013-05-16	PLoS One	Imputation of variants from the 1000 Genomes Project modestly improves known associations and can identify low-frequency variant-phenotype associations undetected by HapMap based imputation.	Hormone measurements	up to 1,200 European ancestry individuals	NA	7q22.1	ZKSCAN5	rs34670419-?	NR	2E-9	(Dehydroepiandrosterone)			Illumina [up to 10879115] (imputed)	N
1341	chr7	99130833	99130834	rs34670419	23696881	Wood AR	2013-05-16	PLoS One	Imputation of variants from the 1000 Genomes Project modestly improves known associations and can identify low-frequency variant-phenotype associations undetected by HapMap based imputation.	Hormone measurements	up to 1,200 European ancestry individuals	NA	7q22.1	ZKSCAN5	rs34670419-?	NR	2E-8	(Cortisol:DHEAS ratio)			Illumina [up to 10879115] (imputed)	N
1341	chr7	99131604	99131605	rs6974831	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	7q22.1	NR	rs6974831-G	NR	2E-14		0.0466	[0.035-0.059] unit increase	Affymetrix [9000000] (imputed)	N
1341	chr7	99137873	99137874	rs10264505	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q22.1	NR	rs10264505-A	0.0801717	3E-12				Affymetrix, Illumina [24649327] (imputed)	N
1341	chr7	99137873	99137874	rs10264505	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	7q22.1	NR	rs10264505-A	0.091047	2E-14		0.024518	[0.018-0.031] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1341	chr7	99141372	99141373	rs10278040	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	DHEAS levels	4,301 European ancestry men, 3,358 European ancestry women	NA	7q22.1	NR	rs10278040-A	0.054	6E-18		0.189853	[0.15-0.23] unit decrease	Affymetrix [up to 8900000] (imputed)	N
1341	chr7	99141372	99141373	rs10278040	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	DHEAS levels	4,301 European ancestry men, 3,358 European ancestry women	NA	7q22.1	NR	rs10278040-A	0.054	3E-12	(men)	0.190167	[0.14-0.24] unit decrease	Affymetrix [up to 8900000] (imputed)	N
1341	chr7	99141372	99141373	rs10278040	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	DHEAS levels	4,301 European ancestry men, 3,358 European ancestry women	NA	7q22.1	NR	rs10278040-A	0.054	1E-7	(women)	0.189366	[0.12-0.26] unit decrease	Affymetrix [up to 8900000] (imputed)	N
1341	chr7	99141372	99141373	rs10278040	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	7q22.1	CYP3A5	rs10278040-A	0.04	9E-113	(androsterone sulfate)	0.361	[0.33-0.39] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
1341	chr7	99141372	99141373	rs10278040	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	7q22.1	CYP3A5	rs10278040-A	0.04	1E-29	(5alpha-androstan-3beta,17beta-diol disulfate)	0.19	[0.16-0.22] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
1341	chr7	99156983	99156984	rs10706589	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	7q22.1		rs10706589-A	NR	2E-18		0.0246	[0.019-0.03] unit decrease	Affymetrix, Illumina [20529698] (imputed)	N
1341	chr7	99163950	99163951	rs11974702	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	7q22.1	CYP3A5	rs11974702-A	0.91	3E-75	(epiandrosterone sulfate)	0.184	[0.16-0.2] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
1341	chr7	99171448	99171449	rs952319	23093944	Krumsiek J	2012-10-18	PLoS Genet	Mining the unknown: a systems approach to metabolite identification combining genetic and metabolic information.	Serum metabolite levels	1,678 European ancestry individuals	NA	7q22.1	ARPC1B, BUD31, ZKSCAN5, ZNF655	rs952319-?	NR	2E-12	(androsteronesulfate)	0.1135	[NR] unit decrease	Affymetrix [655658]	N
1341	chr7	99177715	99177716	rs17161766	34834585	Zazuli Z	2021-11-20	J Pers Med	Association between Genetic Variants and Cisplatin-Induced Nephrotoxicity: A Genome-Wide Approach and Validation Study.	Cisplatin-induced nephrotoxicity (decreased eGFR)	608 European ancestry individuals	NA	7q22.1		rs17161766-G	NR	8E-9		28.9	[19.08-38.72] decrease	Illumina [6500000] (imputed)	N
1341	chr7	99181095	99181096	rs11772470	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	7q22.1	NR	rs11772470-A	0.14826399999999995	8E-14		0.0301631	[0.022-0.039] unit increase	Affymetrix [16577313] (imputed)	N
1341	chr7	99181838	99181839	rs6961634	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	7q22.1	NR	rs6961634-G	0.851052	2E-20		0.0273754	[0.022-0.033] unit increase	NR [NR]	N
1341	chr7	99184777	99184778	rs7809615	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite ratios	Up to 5,591 European ancestry individuals	Up to 1,767 European ancestry individuals	7q22.1	CYP3A5	rs7809615-T	0.09	8E-139	(androsterone sulfate/4-androsten-3beta,17beta-diol disulfate 2)	0.249	[0.23-0.27] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
1341	chr7	99185405	99185406	rs12333760	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	7q22.1		rs12333760-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1341	chr7	99188588	99188589	rs10257273	33568662	Dashti HS	2021-02-10	Nat Commun	Genetic determinants of daytime napping and effects on cardiometabolic health.	Daytime nap	452,633 European ancestry individuals	541,333 European ancestry individuals	7q22.1	GS1-259H13.13	rs10257273-A		1E-12		0.0085	[0.0061-0.0109] unit increase	Affymetrix [13304133] (imputed)	N
1341	chr7	99188588	99188589	rs10257273	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	DHEAS levels	4,301 European ancestry men, 3,358 European ancestry women	NA	7q22.1	NR	rs10257273-T	0.148	9E-14		0.10549	[0.078-0.133] unit decrease	Affymetrix [up to 8900000] (imputed)	N
1341	chr7	99188588	99188589	rs10257273	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	DHEAS levels	4,301 European ancestry men, 3,358 European ancestry women	NA	7q22.1	NR	rs10257273-T	0.148	3E-8	(women)	0.123667	[0.08-0.168] unit decrease	Affymetrix [up to 8900000] (imputed)	N
1341	chr7	99188588	99188589	rs10257273	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	DHEAS levels	4,301 European ancestry men, 3,358 European ancestry women	NA	7q22.1	NR	rs10257273-T	0.147	6E-7	(men)	0.0892611	[0.054-0.124] unit decrease	Affymetrix [up to 8900000] (imputed)	N
1341	chr7	99196427	99196428	rs10254729	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	7q22.1	NR	rs10254729-G	0.153	6E-23		0.014771	[0.012-0.018] unit decrease	NR [9732723] (imputed)	N
1341	chr7	99196427	99196428	rs10254729	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	7q22.1	NR	rs10254729-G	0.152	7E-14		0.0152304	[0.011-0.019] unit increase	NR [9732723] (imputed)	N
1341	chr7	99197177	99197178	rs10240199	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Cigarettes smoked per day (MTAG)	up to 403,928 European ancestry individuals	NA	7q22.1	NR	rs10240199-C	0.106	6E-9		0.020573	[0.014-0.028] unit decrease	NR [9732723] (imputed)	N
1341	chr7	99207875	99207876	rs7792939	19260139	Polasek O	2009-02-01	Croat Med J	Genome-wide association study of anthropometric traits in Korcula Island, Croatia.	Anthropometric traits	898 Korculan (founder/genetic isolate) individuals	NA	7q22.1	ZNF498	rs7792939-?	0.15	6E-6	(hip circumference)	0.26	[0.15-0.37] mm increase	Illumina [316730]	N
1341	chr7	99207875	99207876	rs7792939	19260139	Polasek O	2009-02-01	Croat Med J	Genome-wide association study of anthropometric traits in Korcula Island, Croatia.	Anthropometric traits	898 Korculan (founder/genetic isolate) individuals	NA	7q22.1	ZNF498	rs7792939-?	0.15	5E-6	(brachial circumference)	0.26	[0.15-0.37] mm increase	Illumina [316730]	N
1341	chr7	99207875	99207876	rs7792939	19260139	Polasek O	2009-02-01	Croat Med J	Genome-wide association study of anthropometric traits in Korcula Island, Croatia.	Anthropometric traits	898 Korculan (founder/genetic isolate) individuals	NA	7q22.1	ZNF498	rs7792939-?	0.15	4E-6	(weight)	0.26	[0.15-0.37] kg increase	Illumina [316730]	N
1341	chr7	99208898	99208899	rs10238028	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	145,648 East Asian ancestry individuals	NA	7q22.1	NR	rs10238028-A	0.709893	1E-11		0.028216	[0.02-0.036] SD units increase	Affymetrix, Illumina [16710488] (imputed)	N
1341	chr7	99208898	99208899	rs10238028	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	7q22.1	NR	rs10238028-G	0.06704100000000002	7E-9		0.0141832	[0.0093-0.019] unit increase	Affymetrix [16585854] (imputed)	N
1341	chr7	99208898	99208899	rs10238028	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	7q22.1	NR	rs10238028-G	0.06704100000000002	1E-11		0.0188106	[0.013-0.024] unit increase	Affymetrix [16585866] (imputed)	N
1342	chr7	99227171	99227172	rs1859690	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	7q22.1	NR	rs1859690-G	0.06694900000000004	7E-16		0.0130426	[0.0098-0.0163] unit increase	Affymetrix [16582909] (imputed)	N
1342	chr7	99227171	99227172	rs1859690	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	7q22.1	NR	rs1859690-G	0.06692100000000001	1E-9		0.0133978	[0.0089-0.0179] unit increase	Affymetrix [16582621] (imputed)	N
1342	chr7	99227171	99227172	rs1859690	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	7q22.1	NR	rs1859690-G	0.06694900000000004	1E-18		0.0160235	[0.012-0.02] unit increase	Affymetrix [16582965] (imputed)	N
1342	chr7	99227171	99227172	rs1859690	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	7q22.1	NR	rs1859690-G	0.06692100000000001	7E-11		0.0154137	[0.011-0.02] unit increase	Affymetrix [16582614] (imputed)	N
1342	chr7	99235521	99235522	rs6465750	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	7q22.1	GS1-259H13.7	rs6465750-T	0.067773	5E-23		0.04362647	[0.035-0.052] unit increase	Affymetrix [93095623] (imputed)	N
1342	chr7	99240178	99240179	rs10242455	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	7q22.1	CYP3A5	rs10242455-A	0.93	2E-109	(X-12063)	0.221	[0.2-0.24] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
1342	chr7	99240178	99240179	rs10242455	23093944	Krumsiek J	2012-10-18	PLoS Genet	Mining the unknown: a systems approach to metabolite identification combining genetic and metabolic information.	Serum metabolite levels	1,678 European ancestry individuals	NA	7q22.1	CPSF4, CYP3A5, CYP3A7, ZNF498	rs10242455-?	NR	1E-45	(X-12063)	0.2485	[NR] unit decrease	Affymetrix [655658]	N
1342	chr7	99250393	99250393	rs41303343	30801552	Oetting WS	2019-02-19	Transplantation	Genetic Variants Associated with Immunosuppressant Pharmacokinetics and Adverse Effects in the DeKAF Genomics Genome Wide Association Studies.	Tacrolimus trough concentration in kidney transplant patients	1,363 European ancestry individuals, 299 African American individuals	609 European ancestry individuals, 171 African American individuals	7q22.1	NR	rs41303343-?	NR	4E-27	(AA)	0.5614	[0.46-0.66] unit increase	Affymetrix [~ 40000000] (imputed)	N
1342	chr7	99251706	99251707	rs12334072	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	7q22.1		rs12334072-G	NR	2E-10		0.0282	[0.02-0.037] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
1342	chr7	99252178	99252179	rs12333599	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Platelet count	108,208 Japanese ancestry individuals	NA	7q22.1	CYP3A5	rs12333599-?	NR	4E-9		0.03015	[0.02-0.04] unit decrease novel	Illumina [6108953] (imputed)	N
1342	chr7	99256843	99256844	rs7780328	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	7q22.1		rs7780328-A	0.933	6E-11				Affymetrix [10369434] (imputed)	N
1342	chr7	99266317	99266318	rs4646450	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	7q22.1	NR	rs4646450-A	0.162442	5E-10		0.016304	[0.011-0.021] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
1342	chr7	99266317	99266318	rs4646450	25898920	Korostishevsky M	2015-04-22	Eur J Hum Genet	Genomics and metabolomics of muscular mass in a community-based sample of UK females.	Blood metabolite levels	3,953 European ancestry individuals	NA	7q22.1	NR	rs4646450-?	NR	5E-50	(X12063 levels)			Illumina [2300000]	N
1342	chr7	99270538	99270539	rs776746	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite modules (eigenmetabolites) in chronic kidney disease	1,221 cases	406 cases	7q22.1	CYP3A5	rs776746-T	0.07	3E-18	(X-24327, X-24353)	0.015	[0.011-0.019] unit decrease	Illumina [7750367] (imputed)	N
1342	chr7	99270538	99270539	rs776746	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	7q22.1	CYP3A5	rs776746-T	0.07	9E-30	(X - 24353)	0.777	[0.64-0.91] unit decrease	Illumina [7750367] (imputed)	N
1342	chr7	99270538	99270539	rs776746	30801552	Oetting WS	2019-02-19	Transplantation	Genetic Variants Associated with Immunosuppressant Pharmacokinetics and Adverse Effects in the DeKAF Genomics Genome Wide Association Studies.	Tacrolimus trough concentration in kidney transplant patients	1,363 European ancestry individuals, 299 African American individuals	609 European ancestry individuals, 171 African American individuals	7q22.1	NR	rs776746-?	NR	5E-35	(AA)	0.4488	[0.38-0.52] unit increase	Affymetrix [~ 40000000] (imputed)	N
1342	chr7	99270538	99270539	rs776746	30801552	Oetting WS	2019-02-19	Transplantation	Genetic Variants Associated with Immunosuppressant Pharmacokinetics and Adverse Effects in the DeKAF Genomics Genome Wide Association Studies.	Tacrolimus trough concentration in kidney transplant patients	1,363 European ancestry individuals, 299 African American individuals	609 European ancestry individuals, 171 African American individuals	7q22.1	NR	rs776746-?	NR	4E-97	(EA)	0.6443	[0.58-0.70] unit increase	Affymetrix [~ 40000000] (imputed)	N
1342	chr7	99286638	99286639	rs188845491	25935875	Varenhorst C	2015-05-02	Eur Heart J	Effect of genetic variations on ticagrelor plasma levels and clinical outcomes.	Ticagrelor levels in individuals with acute coronary syndromes treated with ticagrelor	1,794 European ancestry cases, 18 African and Asian ancestry cases	1,922 European ancestry cases, 19 African and Asian ancestry cases	7q22.1	CYP3A5	rs188845491-C	0.007	3E-12		0.495	[0.36-0.63] unit increase	Illumina [10962468] (imputed)	N
1342	chr7	99296194	99296195	rs1818797	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	7q22.1		rs1818797-G	0.082	2E-12				Affymetrix [10369434] (imputed)	N
1342	chr7	99302112	99302113	rs2740563	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	7q22.1		rs2740563-C	0.751639	8E-14		0.0286113	[0.021-0.036] unit increase	Illumina [13478928] (imputed)	N
1342	chr7	99307971	99307972	rs45537635	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	7q22.1	NR	rs45537635-T	NR	4E-10		0.05	[0.034-0.066] unit increase	Affymetrix [9000000] (imputed)	N
1342	chr7	99332947	99332948	rs45446698	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	7q22.1		rs45446698-G	NR	3E-19		0.0367	[0.029-0.045] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1342	chr7	99332947	99332948	rs45446698	34255042	Schmitz D	2021-07-13	J Clin Endocrinol Metab	Genome-Wide Association Study of Estradiol Levels, and the Causal Effect of Estradiol on Bone Mineral Density.	Estradiol levels	37,461 European ancestry female cases, 126,524 European ancestry female controls	NA	7q22.1	CYP3A7	rs45446698-G	0.043	8E-12		0.813	[0.767-0.863]	Affymetrix [7871717] (imputed)	N
1342	chr7	99332947	99332948	rs45446698	34255042	Schmitz D	2021-07-13	J Clin Endocrinol Metab	Genome-Wide Association Study of Estradiol Levels, and the Causal Effect of Estradiol on Bone Mineral Density.	Estradiol levels	13,367 European ancestry male cases, 134,323 European ancestry male controls	NA	7q22.1	CYP3A7	rs45446698-G	0.043	1E-9		0.811	[0.758-0.868]	Affymetrix [7871717] (imputed)	N
1342	chr7	99332947	99332948	rs45446698	33495599	Johnson N	2021-01-26	Br J Cancer	CYP3A7*1C allele: linking premenopausal oestrone and progesterone levels with risk of hormone receptor-positive breast cancers.	Estrone-3-glucuronide levels	560 European ancestry individuals	NA	7q22.1	CYP3A	rs45446698-C		3E-18		49.17	[41.11-56.12] % decrease	Illumina [8280353] (imputed)	N
1342	chr7	99332947	99332948	rs45446698	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	7q22.1	NR	rs45446698-G	NR	1E-10		0.0383	[0.027-0.05] unit decrease	Affymetrix [9000000] (imputed)	N
1342	chr7	99332947	99332948	rs45446698	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Testosterone levels	310,461 European ancestry individuals, 5,453 African ancestry individuals, 6,680 South Asian ancestry individuals	NA	7q22.1	NR	rs45446698-G	NR	1E-136		0.1605	[0.15-0.17] unit decrease	Affymetrix [9000000] (imputed)	N
1342	chr7	99332947	99332948	rs45446698	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	7q22.1	NR	rs45446698-G	NR	1E-12		0.0425	[0.031-0.054] unit decrease	Affymetrix [9000000] (imputed)	N
1342	chr7	99332947	99332948	rs45446698	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	7q22.1	CYP3A5, CYP3A7, CYP3A7-CYP3AP1	rs45446698-T	0.976046	5E-60	(5alpha-androstan-3alpha,17beta-diol monosulfate (1))	1.193	[1.05-1.34] unit increase	Illumina [13039987] (imputed)	N
1342	chr7	99332947	99332948	rs45446698	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	7q22.1	CYP3A5, CYP3A7, CYP3A7-CYP3AP1	rs45446698-T	0.976046	4E-75	(androsterone sulfate)	1.356	[1.21-1.5] unit increase	Illumina [13039987] (imputed)	N
1342	chr7	99332947	99332948	rs45446698	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	7q22.1	CYP3A5, CYP3A7, CYP3A7-CYP3AP1	rs45446698-T	0.976046	4E-60	(epiandrosterone sulfate)	1.212	[1.07-1.36] unit increase	Illumina [13039987] (imputed)	N
1342	chr7	99332947	99332948	rs45446698	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	7q22.1	CYP3A5, CYP3A7, CYP3A7-CYP3AP1	rs45446698-T	0.976046	4E-49	(16a-hydroxy DHEA 3-sulfate)	1.077	[0.93-1.22] unit decrease	Illumina [13039987] (imputed)	N
1342	chr7	99332947	99332948	rs45446698	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	7q22.1	CYP3A5, CYP3A7, CYP3A7-CYP3AP1	rs45446698-T	0.976046	4E-36	(androstenediol (3alpha, 17alpha) monosulfate (3))	0.931	[0.79-1.08] unit increase	Illumina [13039987] (imputed)	N
1342	chr7	99332947	99332948	rs45446698	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	7q22.1	CYP3A5, CYP3A7, CYP3A7-CYP3AP1	rs45446698-T	0.976046	2E-37	(andro steroid monosulfate C19H28O6S (1)*)	0.933	[0.79-1.08] unit decrease	Illumina [13039987] (imputed)	N
1342	chr7	99332947	99332948	rs45446698	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	7q22.1	CYP3A5, CYP3A7, CYP3A7-CYP3AP1	rs45446698-T	0.976046	1E-48	(5alpha-androstan-3beta,17beta-diol monosulfate (2))	1.083	[0.94-1.23] unit increase	Illumina [13039987] (imputed)	N
1342	chr7	99332947	99332948	rs45446698	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	7q22.1	CYP3A5, CYP3A7, CYP3A7-CYP3AP1	rs45446698-T	0.976046	1E-23	(5alpha-androstan-3beta,17beta-diol disulfate)	0.731	[0.59-0.87] unit increase	Illumina [13039987] (imputed)	N
1342	chr7	99332947	99332948	rs45446698	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	7q22.1	CYP3A5, CYP3A7, CYP3A7-CYP3AP1	rs45446698-T	0.976046	1E-12	(dehydroisoandrosterone sulfate (DHEA-S))	0.53	[0.38-0.68] unit increase	Illumina [13039987] (imputed)	N
1342	chr7	99332947	99332948	rs45446698	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	7q22.1	NR	rs45446698-T	0.95785	2E-315		0.120075	[0.11-0.13] unit increase	Affymetrix [16578495] (imputed)	N
1342	chr7	99332947	99332948	rs45446698	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	7q22.1	NR	rs45446698-T	0.95805	2E-635		0.371002	[0.36-0.38] unit increase	Affymetrix [16580851] (imputed)	N
1342	chr7	99332947	99332948	rs45446698	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Estradiol levels	206,927 European ancestry men	NA	7q22.1	NR	rs45446698-T	0.957565	8E-14		0.0156669	[0.012-0.02] unit increase	Affymetrix [16582268] (imputed)	N
1342	chr7	99332947	99332948	rs45446698	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	7q22.1	NR	rs45446698-T	0.957796	1E-32		0.058755	[0.049-0.069] unit increase	Affymetrix [16583148] (imputed)	N
1342	chr7	99332947	99332948	rs45446698	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	7q22.1	NR	rs45446698-T	0.958078	5E-148		0.161091	[0.15-0.17] unit increase	Affymetrix [16585745] (imputed)	N
1342	chr7	99332947	99332948	rs45446698	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite modules (eigenmetabolites) in chronic kidney disease	1,221 cases	406 cases	7q22.1	CYP3A7	rs45446698-G	0.03	1E-10	(glyco-beta-muricholatemtauro-beta-muricholate, X-23157)	0.017	[0.011-0.023] unit increase	Illumina [7750367] (imputed)	N
1342	chr7	99332947	99332948	rs45446698	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	7q22.1	CYP3A7	rs45446698-G	0.03	4E-12	(epiandrosterone sulfate)	1.589	[1.14-2.04] unit decrease	Illumina [7750367] (imputed)	N
1342	chr7	99332947	99332948	rs45446698	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	7q22.1	CYP3A7	rs45446698-G	0.03	1E-13	(glyco-beta-muricholate)	1.623	[1.2-2.05] unit increase	Illumina [7750367] (imputed)	N
1342	chr7	99332947	99332948	rs45446698	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	7q22.1	CYP3A7-CYP3AP1	rs45446698-G	0.04181100000000004	2E-17		0.066721	[0.051-0.082] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
1342	chr7	99332947	99332948	rs45446698	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	7q22.1	CYP3A7-CYP3A51P	rs45446698-T	0.95677	2E-20		0.0421714	[0.033-0.051] unit increase	NR [13737936] (imputed)	N
1342	chr7	99332947	99332948	rs45446698	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7q22.1		rs45446698-?	NR	7E-33				NR [~ 8900000] (imputed)	N
1342	chr7	99332947	99332948	rs45446698	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	7q22.1		rs45446698-?	NR	1E-17				NR [~ 8900000] (imputed)	N
1342	chr7	99332947	99332948	rs45446698	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	7q22.1		rs45446698-?	NR	4E-15		0.038737	[0.029-0.049] unit increase	Affymetrix [20259828] (imputed)	N
1342	chr7	99332947	99332948	rs45446698	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	7q22.1	CYP3A7	rs45446698-G	0.041	5E-74	(DNA repair protein RAD51 homolog 4, RAD51L3.12554.10.3)	1.11	[0.99-1.23] unit decrease	Affymetrix [10572788] (imputed)	N
1342	chr7	99332996	99332997	rs45467892	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	7q22.1	CYP3A5, CYP3A7, CYP3A7-CYP3AP1	rs45467892-T	0.981216	9E-12	(5alpha-androstan-3beta,17alpha-diol disulfate)	0.579	[0.41-0.75] unit increase	Illumina [13039987] (imputed)	N
1342	chr7	99347505	99347506	rs2014764	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	7q22.1		rs2014764-T	0.874	3E-9				Affymetrix [10369434] (imputed)	N
1342	chr7	99348327	99348328	rs6945984	23093944	Krumsiek J	2012-10-18	PLoS Genet	Mining the unknown: a systems approach to metabolite identification combining genetic and metabolic information.	Serum metabolite levels	1,678 European ancestry individuals	NA	7q22.1	intergenic	rs6945984-?	NR	8E-23	(X-12063)	0.1434	[NR] unit decrease	Affymetrix [655658]	N
1343	chr7	99366315	99366316	rs35599367	30801552	Oetting WS	2019-02-19	Transplantation	Genetic Variants Associated with Immunosuppressant Pharmacokinetics and Adverse Effects in the DeKAF Genomics Genome Wide Association Studies.	Tacrolimus trough concentration in kidney transplant patients	1,363 European ancestry individuals, 299 African American individuals	609 European ancestry individuals, 171 African American individuals	7q22.1	NR	rs35599367-?	NR	6E-18	(EA)	0.2896	[0.22-0.36] unit increase	Affymetrix [~ 40000000] (imputed)	N
1343	chr7	99366315	99366316	rs35599367	29160300	Oetting WS	2017-11-21	Pharmacogenomics J	Genome-wide association study identifies the common variants in CYP3A4 and CYP3A5 responsible for variation in tacrolimus trough concentration in Caucasian kidney transplant recipients.	Tacrolimus trough concentration in kidney transplant patients	1,345 European ancestry individuals (homozygous for LoF CYPA3A5)	NA	7q22.1	CYP3A43, CYP3A4, ZKSCAN5, CPSF4, ATP5J2, PTCD1, ZNF789, GSI-259H13.2, TRIM4	rs35599367-A	0.054	2E-17		0.3	[0.23-0.37] unit increase	Affymetrix [1221308] (imputed)	N
1343	chr7	99366708	99366709	rs28988583	31358989	Gelernter J	2019-07-29	Nat Neurosci	Genome-wide association study of post-traumatic stress disorder reexperiencing symptoms in >165,000 US veterans.	Post-traumatic stress disorder (re-experiencing symptoms)	146,660 European ancestry individuals, 19,983 African American individuals	117,900 European ancestry individuals	7q22.1	NR	rs28988583-?	NR	5E-6	(AA)	0.546471	[NR] unit increase	Affymetrix [49134253] (imputed)	N
1343	chr7	99368800	99368800	rs28908768	31219150	Ekenberg C	2019-06-13	J Infect Dis	Single nucleotide polymorphisms in HLA alleles are associated with HIV-1 viral load in demographically diverse, ART-naive participants from the START trial.	Pre-treatment viral load in HIV-1 infection	1,398 European ancestry individuals, 572 Black individuals, 418 Hispanic individuals, 13 Asian ancestry individuals, 39 individuals	NA	7q22.1	CYP3A4	rs28908768-TC	0.053	3E-18		0.45	[0.35-0.55] unit decrease	Affymetrix [339439]	N
1343	chr7	99374709	99374710	rs34642455	30134952	Traglia M	2018-08-22	Genome Med	Cross-genetic determination of maternal and neonatal immune mediators during pregnancy.	Neonatal cytokine/chemokine levels (maternal genetic effect)	790 Hispanic, European, Asian, South Asian or African American individuals	NA	7q22.1	CYP3A4	rs34642455-C	0.13	3E-8	(CXCL5)	2.17	[1.43-2.91] unit decrease	Affymetrix [629686]	N
1343	chr7	99421084	99421085	rs62471956	25935875	Varenhorst C	2015-05-02	Eur Heart J	Effect of genetic variations on ticagrelor plasma levels and clinical outcomes.	Ticagrelor levels in individuals with acute coronary syndromes treated with ticagrelor	1,794 European ancestry cases, 18 African and Asian ancestry cases	1,922 European ancestry cases, 19 African and Asian ancestry cases	7q22.1	CYP3A43, CYP3A4, CYP3A52P	rs62471956-G	0.034	1E-14		0.211	[0.16-0.26] unit increase	Illumina [10962468] (imputed)	N
1343	chr7	99429842	99429843	rs651430	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	7q22.1		rs651430-G	0.45329	7E-7		0.033838	[0.02-0.047] unit decrease	Affymetrix [15580782] (imputed)	N
1343	chr7	99433589	99433590	rs80193476	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	DHEAS levels	4,301 European ancestry men, 3,358 European ancestry women	NA	7q22.1	NR	rs80193476-T	0.041	6E-13		0.194554	[0.14-0.25] unit decrease	Affymetrix [up to 8900000] (imputed)	N
1343	chr7	99433589	99433590	rs80193476	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	DHEAS levels	4,301 European ancestry men, 3,358 European ancestry women	NA	7q22.1	NR	rs80193476-T	0.04	2E-10	(men)	0.221598	[0.15-0.29] unit decrease	Affymetrix [up to 8900000] (imputed)	N
1343	chr7	99460106	99460107	rs472660	23093944	Krumsiek J	2012-10-18	PLoS Genet	Mining the unknown: a systems approach to metabolite identification combining genetic and metabolic information.	Serum metabolite levels	1,678 European ancestry individuals	NA	7q22.1	CYP3A43	rs472660-?	NR	1E-11	(X-12063)	0.08568	[NR] unit decrease	Affymetrix [655658]	N
1343	chr7	99480832	99480833	rs181601681	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	7q22.1		rs181601681-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1344	chr7	99489570	99489571	rs17277546	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Testosterone levels	310,461 European ancestry individuals, 5,453 African ancestry individuals, 6,680 South Asian ancestry individuals	NA	7q22.1	NR	rs17277546-A	NR	2E-36		0.0763	[0.064-0.088] unit decrease	Affymetrix [9000000] (imputed)	N
1344	chr7	99489570	99489571	rs17277546	29325096	Eriksson AL	2018-01-09	J Clin Endocrinol Metab	Genetic Determinants of Circulating Estrogen Levels, and Evidence of a Causal Effect of Estradiol on Bone Density in Men.	Estrone levels	7,570 European ancestry men	NA	7q22.1	TRIM4	rs17277546-G	0.95	6E-14		3.59	[2.65-4.53] pg/ml increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1344	chr7	99489570	99489571	rs17277546	23093944	Krumsiek J	2012-10-18	PLoS Genet	Mining the unknown: a systems approach to metabolite identification combining genetic and metabolic information.	Serum metabolite levels	1,678 European ancestry individuals	NA	7q22.1	TRIM4	rs17277546-?	NR	3E-15	(epiandrosteronesulfate)	0.1717	[NR] unit decrease	Affymetrix [655658]	N
1344	chr7	99489570	99489571	rs17277546	23093944	Krumsiek J	2012-10-18	PLoS Genet	Mining the unknown: a systems approach to metabolite identification combining genetic and metabolic information.	Serum metabolite levels	1,678 European ancestry individuals	NA	7q22.1	TRIM4	rs17277546-?	NR	2E-21	(androsteronesulfate)	0.2435	[NR] unit decrease	Affymetrix [655658]	N
1344	chr7	99489570	99489571	rs17277546	21886157	Suhre K	2011-08-31	Nature	Human metabolic individuality in biomedical and pharmaceutical research.	Metabolic traits	2,820 European ancestry individuals	NA	7q22.1	CYP3A4	rs17277546-A	0.045	9E-40	(androsterone sulfate + 2 other traits)	0.476	[NR] unit decrease	Affymetrix, Illumina [534665]	N
1344	chr7	99489570	99489571	rs17277546	21533175	Zhai G	2011-04-14	PLoS Genet	Eight common genetic variants associated with serum DHEAS levels suggest a key role in ageing mechanisms.	Dehydroepiandrosterone sulphate levels	14,846 European ancestry individuals	NA	7q22.1	TRIM4, CYP3A43	rs17277546-A	0.05	2E-11		0.11	[0.07-0.15] umol/L decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1344	chr7	99514376	99514377	rs766007111	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	7q22.1	TRIM4	rs766007111-C		1E-13		0.259	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
1344	chr7	99531754	99531755	rs148490894	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	7q22.1	NR	rs148490894-A	0.9769	2E-8		0.043951295	NR unit increase	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
1344	chr7	99543626	99543627	rs140104968	25935875	Varenhorst C	2015-05-02	Eur Heart J	Effect of genetic variations on ticagrelor plasma levels and clinical outcomes.	Ticagrelor levels in individuals with acute coronary syndromes treated with ticagrelor	1,794 European ancestry cases, 18 African and Asian ancestry cases	1,922 European ancestry cases, 19 African and Asian ancestry cases	7q22.1	AZGP1P1, ZKSCAN1	rs140104968-C	0.019	4E-10		0.224	[0.15-0.29] unit increase	Illumina [10962468] (imputed)	N
1344	chr7	99550800	99550801	rs10953292	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7q22.1		rs10953292-?	NR	4E-10				NR [~ 8900000] (imputed)	N
1344	chr7	99565753	99565754	rs187130073	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	7q22.1	AZGP1	rs187130073-G	0.0066	5E-12		0.1546703	[0.11-0.2] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1344	chr7	99566006	99566007	rs8192465	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	7q22.1		rs8192465-A	0.0218	3E-8		0.0272	[0.018-0.037] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1344	chr7	99574737	99574738	rs2247607	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	7q22.1		rs2247607-A	NR	2E-10		0.0123	[0.0086-0.016] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1344	chr7	99574737	99574738	rs2247607	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	7q22.1	Intergenic	rs2247607-A	0.6823	1E-8	(MTAG)	0.0101	[0.0066-0.0136] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1344	chr7	99590892	99590893	rs6974373	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	7q22.1		rs6974373-G	0.39103	6E-7		0.034755	[0.021-0.048] unit increase	Affymetrix [15580782] (imputed)	N
1344	chr7	99593345	99593346	rs4727443	23583980	Fingerlin TE	2013-04-14	Nat Genet	Genome-wide association study identifies multiple susceptibility loci for pulmonary fibrosis.	Interstitial lung disease	1,161 European ancestry cases, 4,683 European ancestry controls	876 European ancestry cases, 1,890 European ancestry controls	7q22.1	intergenic	rs4727443-C	0.39	1E-8		1.3	[1.20-1.41]	Illumina [439828]	N
1344	chr7	99598285	99598286	rs6946168	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	7q22.1	OR2AE1, TRIM4, GJC3, AZGP1, AZGP1P1, ZKSCAN1, ZSCAN21, ZNF3, MCM7, AP4M1, TAF6, CNPY4, MBLAC1, LAMTOR4, GAL3ST4, GPC2, STAG3, GATS, PVRIG, SPDYE3, PILRA, ZCWPW1, TSC22D4, NYAP1, EPO, ZAN	rs6946168-?		3E-16				Affymetrix, Illumina [NR] (imputed)	N
1345	chr7	99616290	99616291	rs13243708	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulmonary fibrosis	1,566 European ancestry cases, 467,560 European ancestry controls, 126 East Asian ancestry cases, 176,974 East Asian ancestry controls	NA	7q22.1		rs13243708-C	NR	2E-8		0.201	[0.13-0.27] unit increase	Affymetrix, Illumina [25843031] (imputed)	N
1345	chr7	99616846	99616847	rs6972742	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	7q22.1	ZKSCAN1	rs6972742-T		5E-18		0.043	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
1345	chr7	99617851	99617852	rs35228488	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	7q22.1		rs35228488-?	NR	4E-25				NR [~ 8900000] (imputed)	N
1345	chr7	99619715	99619716	rs142529006	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	7q22.1		rs142529006-?	NR	6E-21				NR [~ 8900000] (imputed)	N
1345	chr7	99619715	99619716	rs142529006	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	7q22.1		rs142529006-?	NR	1E-14				NR [~ 8900000] (imputed)	N
1345	chr7	99619715	99619716	rs142529006	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	7q22.1		rs142529006-?	NR	1E-12				NR [~ 8900000] (imputed)	N
1345	chr7	99625795	99625796	rs1963304	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	7q22.1	ZKSCAN1	rs1963304-?	NR	1E-14		0.022342002	[0.017-0.028] unit decrease	Illumina [27896057] (imputed)	N
1345	chr7	99626034	99626035	rs1015538	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	7q22.1		rs1015538-G	0.593539	2E-13		0.0150213	[0.011-0.019] unit decrease	Illumina [13479295] (imputed)	N
1345	chr7	99626034	99626035	rs1015538	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	7q22.1	ZKSCAN1	rs1015538-A		3E-8		0.137	unit increase	Affymetrix [at least 2696785] (imputed)	N
1345	chr7	99630341	99630342	rs2897075	31710517	Allen RJ	2019-11-11	Am J Respir Crit Care Med	Genome-Wide Association Study of Susceptibility to Idiopathic Pulmonary Fibrosis.	Idiopathic pulmonary fibrosis	2,668 European ancestry cases, 8,591 European ancestry controls	1,456 European ancestry cases, 11,874 European ancestry controls	7q22.1	NR	rs2897075-T	0.391	3E-14		1.3	[1.21-1.38]	Affymetrix, Illumina [10790934] (imputed)	N
1345	chr7	99630341	99630342	rs2897075	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	7q22.1	ZKSCAN1	rs2897075-C	0.63	7E-10		1.07	[1.04-1.09]	Affymetrix, Illumina [6224355] (imputed)	N
1345	chr7	99635966	99635967	rs72615157	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FEV1/FVC)	48,943 European ancestry individuals	57,176 European ancestry individuals, 38,199 individuals.	7q22.1	ZKSCAN1	rs72615157-A	0.16	2E-9		0.032	[0.022-0.042] unit increase	Affymetrix [27624732] (imputed)	N
1345	chr7	99662825	99662826	rs187753988	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	7q22.1		rs187753988-A	0.0049444	2E-8		0.26901	[0.18-0.36] unit decrease	Affymetrix [15580782] (imputed)	N
1345	chr7	99692992	99692993	rs2261360	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	7q22.1		rs2261360-T	0.23083	6E-6		0.036686	[0.021-0.053] unit increase	Affymetrix [15580782] (imputed)	N
1345	chr7	99692992	99692993	rs2261360	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	7q22.1	ZKSCAN1	rs2261360-T	0.2322	9E-15		0.0219	[0.016-0.027] unit increase	Affymetrix [19819130] (imputed)	N
1345	chr7	99701175	99701176	rs999885	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	7q22.1		rs999885-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1345	chr7	99703957	99703958	rs2293479	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	7q22.1	NR	rs2293479-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
1345	chr7	99706398	99706399	rs117460458	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	7q22.1		rs117460458-?	NR	1E-12				NR [~ 8900000] (imputed)	N
1345	chr7	99711613	99711614	rs4134898	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	7q22.1		rs4134898-C	0.868	2E-37		0.21	[0.18-0.24] % increase	Affymetrix [NR] (imputed)	N
1345	chr7	99719503	99719504	rs11974814	32238385	Nakayama A	2020-04-01	Ann Rheum Dis	Subtype-specific gout susceptibility loci and enrichment of selection pressure on ABCG2 and ALDH2 identified by subtype genome-wide meta-analyses of clinically defined gout patients.	Renal overload gout	486 Japanese ancestry male cases, 4,554 Japanese ancestry male controls	NA	7q22.1	CNPY4	rs11974814-C	0.131	6E-7		1.61	[1.33-1.94]	Illumina [7206774] (imputed)	N
1345	chr7	99720993	99720994	rs35146811	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	7q22.1		rs35146811-C	0.27	3E-13		7.29	z score increase	Affymetrix [9061022] (imputed)	N
1345	chr7	99720993	99720994	rs35146811	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical thickness (MOSTest)	26,502 European ancestry individuals	NA	7q22.1	NR	rs35146811-?		4E-10				NR [7428630] (imputed)	N
1345	chr7	99720993	99720994	rs35146811	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	7q22.1	CNPY4, MBLAC1, TAF6	rs35146811-A	0.7245	2E-6		0.0337	[0.02-0.048] unit decrease	NR [8041861] (imputed)	N
1345	chr7	99724693	99724694	rs138428123	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	7q22.1	MBLAC1	rs138428123-G	0.00702800000000003	2E-27		0.14677958	[0.12-0.17] unit decrease	Affymetrix [93095623] (imputed)	N
1345	chr7	99724693	99724694	rs138428123	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	7q22.1	MBLAC1	rs138428123-G		6E-26		0.13	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
1345	chr7	99728545	99728546	rs77273076	31537649	Salem RM	2019-09-19	J Am Soc Nephrol	Genome-Wide Association Study of Diabetic Kidney Disease Highlights Biology Involved in Glomerular Basement Membrane Collagen.	Microalbuminuria in type 1 diabetes	2,447 European ancestry cases, 12,113 European ancestry controls	NA	7q22.1	MBLAC1	rs77273076-T	0.008	1E-8		9.16	[NR]	Illumina [up to 49000000] (imputed)	N
1345	chr7	99736058	99736059	rs11771139	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	7q22.1		rs11771139-A	0.28	9E-19		8.84	z score increase	Affymetrix [9061022] (imputed)	N
1345	chr7	99736058	99736059	rs11771139	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	7q22.1	NR	rs11771139-A	0.2853	3E-16				NR [9056863] (imputed)	N
1345	chr7	99744571	99744572	rs77686669	28203683	Heit JA	2017-02-16	Thromb Haemost	Identification of unique venous thromboembolism-susceptibility variants in African-Americans.	Venous thromboembolism adjusted for sickle cell variant rs77121243-T	393 African American cases, 4,941 African American controls.	NR	7q22.1	C7orf59	rs77686669-C	0.0644	6E-6		1.901	[1.441-2.507]	Affymetrix, Illumina [14074516] (imputed)	N
1346	chr7	99759204	99759205	rs34130487	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	7q22.1	NR	rs34130487-T	0.2845	3E-8				NR [9056863] (imputed)	N
1346	chr7	99765788	99765789	rs140367586	27798624	Eppinga RN	2016-10-31	Nat Genet	Identification of genomic loci associated with resting heart rate and shared genetic predictors with all-cause mortality.	Resting heart rate	127,919 European ancestry individuals, 2,478 Asian ancestry individuals, 1,734 Black individuals, 684 Mixed ancestry individuals, 1,436 individuals	130,795 European ancestry individuals	7q22.1	NR	rs140367586-G	0.02	2E-10		1.05	[0.72-1.38] unit decrease	Affymetrix [19941912] (imputed)	N
1346	chr7	99776271	99776272	rs7799441	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	7q22.1		rs7799441-?	NR	2E-15				NR [~ 8900000] (imputed)	N
1346	chr7	99782908	99782909	rs79246196	29071344	Zhou H	2017-10-25	JAMA Psychiatry	Genetic Risk Variants Associated With Comorbid Alcohol Dependence and Major Depression.	Major depression and alcohol dependence	3,041 African American individuals, 1,618 European ancestry individuals	1,612 African American individuals, 1,551 European ancestry individuals	7q22.1	intergenic	rs79246196-C	NR	1E-6	(AA)	1.016	unit increase	Illumina [at least 5086170] (imputed)	N
1346	chr7	99785749	99785750	rs4727449	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	7q22.1	STAG3	rs4727449-T	0.1607	3E-8		5.5144157	NR z-unit increase	Affymetrix, Illumina [up to 10847151] (imputed)	N
1346	chr7	99817195	99817196	rs17250196	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	7q22.1		rs17250196-?	NR	3E-10				NR [~ 8900000] (imputed)	N
1346	chr7	99827530	99827531	rs117430166	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	DHEAS levels	4,301 European ancestry men, 3,358 European ancestry women	NA	7q22.1	NR	rs117430166-T	0.043	2E-8	(men)	0.18205	[0.12-0.25] unit decrease	Affymetrix [up to 8900000] (imputed)	N
1346	chr7	99827530	99827531	rs117430166	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	DHEAS levels	4,301 European ancestry men, 3,358 European ancestry women	NA	7q22.1	NR	rs117430166-T	0.043	1E-6		0.124655	[0.074-0.175] unit decrease	Affymetrix [up to 8900000] (imputed)	N
1346	chr7	99840460	99840461	rs866500	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	7q22.1	NR	rs866500-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
1346	chr7	99841353	99841354	rs117038461	25935875	Varenhorst C	2015-05-02	Eur Heart J	Effect of genetic variations on ticagrelor plasma levels and clinical outcomes.	Ticagrelor levels in individuals with acute coronary syndromes treated with ticagrelor	1,794 European ancestry cases, 18 African and Asian ancestry cases	1,922 European ancestry cases, 19 African and Asian ancestry cases	7q22.1	STAG3, PVRIG, GATS	rs117038461-C	0.017	9E-10		0.232	[0.16-0.31] unit increase	Illumina [10962468] (imputed)	N
1346	chr7	99843352	99843353	rs858502	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	7q22.1	NR	rs858502-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
1346	chr7	99847236	99847237	rs112241539	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Age at menopause	approximately 143,000 European ancestry individuals	NA	7q22.1		rs112241539-?	NR	4E-10				NR [~ 8900000] (imputed)	N
1347	chr7	99893147	99893148	rs6979218	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	7q22.1		rs6979218-G	0.732014	2E-9		0.015594834	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1347	chr7	99893147	99893148	rs6979218	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	7q22.1	PILRA	rs6979218-G	0.7234375	3E-551	(PILRA, 10816_150_3)	1.1669408	[1.13-1.2] unit decrease	Illumina [> 1000000] (imputed)	N
1347	chr7	99893764	99893765	rs73161745	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	7q22.1	NR	rs73161745-T	0.292551	1E-14		0.019722747	[0.015-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1347	chr7	99923062	99923063	rs184562466	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	7q22.1	ZCWPW1	rs184562466-T		2E-26		0.129	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
1347	chr7	99923062	99923063	rs184562466	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	7q22.1	PMS2P1	rs184562466-T	0.0073	2E-13		0.1545303	[0.11-0.2] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1347	chr7	99927435	99927436	rs60750824	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	7q22.1		rs60750824-G	NR	2E-33		0.0367	[0.031-0.043] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1347	chr7	99927435	99927436	rs60750824	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	7q22.1	PMS2P1	rs60750824-G	0.185273	5E-27		0.03219337	[0.026-0.038] unit increase	Affymetrix [93095623] (imputed)	N
1347	chr7	99927435	99927436	rs60750824	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	7q22.1	PMS2P1	rs60750824-G	0.185281	6E-23		0.029406602	[0.024-0.035] unit increase	Affymetrix [93095623] (imputed)	N
1347	chr7	99932048	99932049	rs7384878	34493870	Wightman DP	2021-09-07	Nat Genet	A genome-wide association study with 1,126,563 individuals identifies new risk loci for Alzheimer's disease.	Late-onset Alzheimer's disease	90,338 cases, 1,036,225 controls	NA	7q22.1		rs7384878-?	NR	9E-16				Illumina [NR] (imputed)	N
1347	chr7	99932048	99932049	rs7384878	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Family history of Alzheimer's disease	47,793 European ancestry cases, 328,320 European ancestry controls	NA	7q22.1	ZCWPW1	rs7384878-C	NR	2E-10		6.335	NR z-score decrease	Affymetrix [10847151] (imputed)	N
1347	chr7	99932048	99932049	rs7384878	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	7q22.1		rs7384878-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1347	chr7	99932048	99932049	rs7384878	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 European ancestry individuals with no parental history of Alzheimer's disease	NA	7q22.1	NR	rs7384878-?	NR	1E-10		1.07	[1.05, 1.09]	Affymetrix [7795605] (imputed)	N
1347	chr7	99938954	99938955	rs35305377	31636452	Satizabal CL	2019-10-21	Nat Genet	Genetic architecture of subcortical brain structures in 38,851 individuals.	Caudate nucleus volume	37,741 European ancestry individuals	341 South East and East Asian ancestry individuals, 769 African American individuals	7q22.1	NR	rs35305377-A	0.5467	1E-8		5.709	NR z score decrease	Affymetrix, Illumina [NR] (imputed)	N
1347	chr7	99938954	99938955	rs35305377	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	7q22.1	NR	rs35305377-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
1347	chr7	99938954	99938955	rs35305377	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	7q22.1	PILRB	rs35305377-A	0.574	5E-6		0.042	NR unit increase	Illumina [NR] (imputed)	N
1347	chr7	99939049	99939050	rs118119933	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	7q22.1	STAG3L5P-PVRIG2P-PILRB, PMS2P1, PILRB, STAG3L5P	rs118119933-T	0.172888	5E-12		0.020644054	[0.015-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1347	chr7	99940306	99940307	rs13228694	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	7q22.1	PMS2L1	rs13228694-A	0.043	6E-6	(IGF1 free )	0.03	[NR] ng/mL increase	Illumina [899892]	N
1347	chr7	99947973	99947974	rs141591562	34746714	Hahn T	2021-08-25	EClinicalMedicine	Novel genetic variants associated with mortality after unrelated donor allogeneic hematopoietic cell transplantation.	Transplant-related mortality after unrelated donor allogeneic hematopoietic cell transplantation (recipient effect)	2,799 European ancestry recipients	NA	7q22.1		rs141591562-A	0.03	1E-8		2.3326385	[1.742554255930107-3.122543830785185]	Illumina [8515276] (imputed)	N
1347	chr7	99953123	99953124	rs140966444	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	7q22.1	PILRB	rs140966444-T	0.00721700000000003	4E-28		0.14478481	[0.12-0.17] unit decrease	Affymetrix [93095623] (imputed)	N
1347	chr7	99955638	99955639	rs377261043	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	7q22.1		rs377261043-T	NR	8E-9		0.0169	[0.011-0.023] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
1347	chr7	99956435	99956436	rs11771799	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q22.1	PILRB, PILRA	rs11771799-T	0.860646	4E-8	(-24 ms)	0.044009	[0.027-0.061] unit decrease	Affymetrix [10000000] (imputed)	N
1347	chr7	99956435	99956436	rs11771799	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	7q22.1		rs11771799-?	NR	9E-11		0.0186926	[0.013-0.025] unit increase	Affymetrix [20259828] (imputed)	N
1347	chr7	99956435	99956436	rs11771799	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	7q22.1	NR	rs11771799-C	0.14	5E-31	(Histatin-1, HTN1.10608.9.3)	0.48	[0.4-0.56] unit increase	Affymetrix [10572788] (imputed)	N
1347	chr7	99957994	99957996	rs151288400	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	7q22.1	PILRB	rs151288400-G	0.187	6E-32	(Histatin-1, HTN1.10608.9.3)	0.37	[0.31-0.43] unit increase	Affymetrix [10572788] (imputed)	N
1347	chr7	99971312	99971313	rs2405442	33766948	Zhu Z	2021-03-25	Eur Respir J	A large-scale genome-wide association analysis of lung function in the Chinese population identifies novel loci and highlights shared genetic etiology with obesity.	Lung function (FEV1/FVC)	100,285 Chinese ancestry individuals	NA	7q22.1		rs2405442-T	0.59	2E-10		0.029	unit decrease	Affymetrix [NR] (imputed)	N
1347	chr7	99971312	99971313	rs2405442	33637690	He L	2021-02-26	Transl Psychiatry	Exome-wide age-of-onset analysis reveals exonic variants in ERN1 and SPPL2C associated with Alzheimer's disease.	Alzheimer's disease (age of onset)	10,216 European ancestry individuals	9,261 European ancestry individuals	7q22.1		rs2405442-?	NR	6E-8		0.879		NR [110450]	N
1347	chr7	99971833	99971834	rs1859788	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	7q22.1	ZCWPW1	rs1859788-A	0.31	2E-15		7.93	NR z-unit decrease	Affymetrix, Illumina [up to 10847151] (imputed)	N
1347	chr7	99971833	99971834	rs1859788	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease (late onset)	24,087 European ancestry cases, 55,058 European ancestry controls	NA	7q22.1	ZCWPW1	rs1859788-A	NR	6E-9		5.8154516	NR z-score decrease	Illumina [up to 9862738] (imputed)	N
1347	chr7	99971833	99971834	rs1859788	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 European ancestry individuals with no parental history of Alzheimer's disease	NA	7q22.1	NR	rs1859788-?	NR	2E-10				Affymetrix [7795605] (imputed)	N
1347	chr7	99971833	99971834	rs1859788	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	7q22.1	NR	rs1859788-?	NR	3E-18				Affymetrix [7795605] (imputed)	N
1347	chr7	99972121	99972122	rs7792525	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	7q22.1	NR	rs7792525-G	0.185925	4E-15		0.018932	[0.014-0.024] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
1347	chr7	99973401	99973402	rs6965458	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q22.1	NR	rs6965458-A	0.159189	1E-12				Affymetrix, Illumina [23467995] (imputed)	N
1347	chr7	99975265	99975266	rs6975660	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	7q22.1		rs6975660-?	NR	4E-13				NR [~ 8900000] (imputed)	N
1347	chr7	99981614	99981615	rs182075427	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	7q22.1		rs182075427-C	0.0053297	5E-8		0.25123	[0.16-0.34] unit decrease	Affymetrix [15580782] (imputed)	N
1347	chr7	99984158	99984159	rs117326834	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	7q22.1		rs117326834-?	NR	5E-19				NR [~ 8900000] (imputed)	N
1347	chr7	99987804	99987805	rs7783550	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HTN1	5,367 Icelandic ancestry individuals	NA	7q22.1		rs7783550-T	0.1774	8E-50		0.360545	[0.31-0.41] unit increase	Illumina [7506463] (imputed)	N
1347	chr7	99991547	99991548	rs7803454	26691988	Fritsche LG	2015-12-21	Nat Genet	A large genome-wide association study of age-related macular degeneration highlights contributions of rare and common variants.	Advanced age-related macular degeneration	16,144 European ancestry cases, 17,832 European ancestry controls	473 Asian ancestry cases, 1,099 Asian ancestry controls, 52 African ancestry cases, 361 African ancestry cases, 254 other non-European ancestry cases, 694 other non-European ancestry controls	7q22.1	PILRB, PILRA	rs7803454-?	NR	5E-9	(EA)	1.13		Illumina [12023830] (imputed)	N
1347	chr7	99997721	99997722	rs185470895	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	7q22.1	PILRA, ZCWPW1	rs185470895-C	0.00631099999999996	3E-14		0.12516719	[0.093-0.158] unit increase	Affymetrix [93095623] (imputed)	N
1347	chr7	100002771	100002772	rs76913697	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	7q22.1	ZCWPW1	rs76913697-G	0.1941	5E-51		0.06867336	[0.06-0.078] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1347	chr7	100004445	100004446	rs1476679	31473137	Moreno-Grau S	2019-08-13	Alzheimers Dement	Genome-wide association analysis of dementia and its clinical endophenotypes reveal novel loci associated with Alzheimer's disease and three causality networks: The GR@ACE project.	Alzheimer's disease	4,120 Spanish ancestry cases, 17,008 cases, 3,289 Spanish ancestry controls, 37,154 controls	1,943 Spanish ancestry cases, 8,572 cases, 3,016 Spanish ancestry controls, 11,312 controls	7q22.1	ZCWPW1	rs1476679-?	NR	2E-6		1.0752687	[1.11-1.04]	Affymetrix [up to 7055881] (imputed)	N
1347	chr7	100004445	100004446	rs1476679	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Family history of Alzheimer's disease	47,793 European ancestry cases, 328,320 European ancestry controls	NA	7q22.1	ZCWPW1	rs1476679-C	NR	1E-9		0.009998	NR unit decrease	Affymetrix [10847151] (imputed)	N
1347	chr7	100004445	100004446	rs1476679	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	7q22.1	ZCWPW1	rs1476679-C	0.3085	6E-14		7.51	NR z-unit decrease	Affymetrix, Illumina [up to 10847151] (imputed)	N
1347	chr7	100004445	100004446	rs1476679	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease (late onset)	24,087 European ancestry cases, 55,058 European ancestry controls	NA	7q22.1	ZCWPW1	rs1476679-C	NR	2E-7		5.21	NR z-score decrease	Illumina [up to 9862738] (imputed)	N
1347	chr7	100004445	100004446	rs1476679	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Maternal history of Alzheimer's disease	27,696 British ancestry cases, 260,980 British ancestry controls	NA	7q22.1	NR	rs1476679-?	NR	2E-6		1.0603615	NR	Affymetrix [7795605] (imputed)	N
1347	chr7	100004445	100004446	rs1476679	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 European ancestry individuals with no parental history of Alzheimer's disease	NA	7q22.1	NR	rs1476679-?	NR	3E-10		1.0651333		Affymetrix [7795605] (imputed)	N
1347	chr7	100004445	100004446	rs1476679	24162737	Lambert JC	2013-10-27	Nat Genet	Meta-analysis of 74,046 individuals identifies 11 new susceptibility loci for Alzheimer's disease.	Alzheimer's disease (late onset)	17,008 European ancestry cases, 37,154 European ancestry controls	8,572 European ancestry cases, 11,312 European ancestry controls	7q22.1	ZCWPW1	rs1476679-T	0.713	6E-10		1.0989	[1.06-1.12]	Illumina [7055881] (imputed)	N
1347	chr7	100006492	100006493	rs68116612	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	7q22.1	ZCWPW1	rs68116612-A	0.1948	5E-13		0.03327809	[0.024-0.042] unit increase	Affymetrix [~ 2500000] (imputed)	N
1348	chr7	100012333	100012334	rs34919929	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	7q22.1	NR	rs34919929-G	NR	7E-7	(LME model)	0.48295	[0.29-0.67] unit increase	NR [NR] (imputed)	N
1348	chr7	100012578	100012579	rs60738304	33766948	Zhu Z	2021-03-25	Eur Respir J	A large-scale genome-wide association analysis of lung function in the Chinese population identifies novel loci and highlights shared genetic etiology with obesity.	Lung function (FEV1)	100,285 Chinese ancestry individuals	NA	7q22.1		rs60738304-A	0.57	1E-8		0.026	L decrease	Affymetrix [NR] (imputed)	N
1348	chr7	100015456	100015457	rs13222543	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Testosterone levels	310,461 European ancestry individuals, 5,453 African ancestry individuals, 6,680 South Asian ancestry individuals	NA	7q22.1	NR	rs13222543-T	NR	1E-14		0.0721	[0.054-0.09] unit decrease	Affymetrix [9000000] (imputed)	N
1348	chr7	100015456	100015457	rs13222543	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	DHEAS levels	4,301 European ancestry men, 3,358 European ancestry women	NA	7q22.1	NR	rs13222543-T	0.017	2E-7		0.220414	[0.14-0.3] unit decrease	Affymetrix [up to 8900000] (imputed)	N
1348	chr7	100015456	100015457	rs13222543	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	DHEAS levels	4,301 European ancestry men, 3,358 European ancestry women	NA	7q22.1	NR	rs13222543-T	0.017	1E-8	(men)	0.30917	[0.2-0.42] unit decrease	Affymetrix [up to 8900000] (imputed)	N
1348	chr7	100015456	100015457	rs13222543	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite ratios	Up to 5,591 European ancestry individuals	Up to 1,767 European ancestry individuals	7q22.1	ZCWPW1	rs13222543-T	0.02	4E-104	(androsterone sulfate/4-androsten-3beta,17beta-diol disulfate 2)	0.49	[0.44-0.54] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
1348	chr7	100015456	100015457	rs13222543	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	7q22.1	ZCWPW1	rs13222543-T	0.02	7E-74	(androsterone sulfate)	0.477	[0.43-0.53] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
1348	chr7	100015456	100015457	rs13222543	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	7q22.1	ZCWPW1	rs13222543-T	0.02	3E-47	(epiandrosterone sulfate)	0.347	[0.3-0.39] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
1348	chr7	100015456	100015457	rs13222543	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	7q22.1	ZCWPW1	rs13222543-T	0.02	1E-20	(5alpha-androstan-3beta,17beta-diol disulfate)	0.263	[0.21-0.32] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
1348	chr7	100035273	100035274	rs117911427	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	7q22.1	NR	rs117911427-A	0.02	7E-6	(EA)	0.1046	[0.059-0.15] unit increase	Illumina [~ 11800000] (imputed)	N
1348	chr7	100053689	100053690	rs2406255	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	7q22.1	C7orf61	rs2406255-T	0.805981	1E-12		0.0164613	[0.012-0.021] unit increase	NR [13737936] (imputed)	N
1348	chr7	100054176	100054177	rs73161772	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	7q22.1	C7orf61	rs73161772-T	0.047523	1E-9		0.035864696	[0.024-0.047] unit decrease	Affymetrix [93095623] (imputed)	N
1348	chr7	100064619	100064620	rs34666277	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Red cell distribution width	441,263 European ancestry individuals	NA	7q22.1		rs34666277-?	NR	3E-35		0.151441	[0.13-0.18] unit increase	NR [9800000] (imputed)	N
1348	chr7	100065442	100065443	rs7811142	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	7q22.1	TSC22D4	rs7811142-T	0.1968	6E-15		0.03575606	[0.027-0.045] unit increase	Affymetrix [~ 2500000] (imputed)	N
1348	chr7	100077272	100077273	rs2406253	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	7q22.1		rs2406253-A	0.8053	4E-14		0.0135	[0.01-0.017] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1348	chr7	100077272	100077273	rs2406253	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	7q22.1	Intergenic	rs2406253-A	0.8053	1E-14	(MTAG)	0.0128	[0.0095-0.0161] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1348	chr7	100077272	100077273	rs2406253	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	7q22.1	NR	rs2406253-A	0.807	5E-8		0.015573843	NR unit increase	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
1348	chr7	100080737	100080738	rs7808970	24952745	Arking DE	2014-06-22	Nat Genet	Genetic association study of QT interval highlights role for calcium signaling pathways in myocardial repolarization.	QT interval	Up to 70,389 European ancestry individuals, up to 672 Orcadian individuals	Up to 33,316 European ancestry individuals	7q22.1	C7orf51	rs7808970-G	0.383	1E-7		0.52	[0.32-0.72] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1348	chr7	100083970	100083971	rs546810441	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	7q22.1	NYAP1	rs546810441-A		5E-82		0.241	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
1348	chr7	100083970	100083971	rs546810441	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	7q22.1	NYAP1	rs546810441-A	0.0079	7E-36		0.2848409	[0.24-0.33] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1348	chr7	100083970	100083971	rs546810441	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	7q22.1	NYAP1	rs546810441-A	0.0079	5E-37		0.2882039	[0.24-0.33] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1348	chr7	100091794	100091795	rs12539172	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	7q22.1	NR	rs12539172-C		4E-8		0.06	[0.04-0.08] unit increase	NR [NR]	N
1348	chr7	100091794	100091795	rs12539172	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	7q22.1	PILRA	rs12539172-C	0.6675	8E-953	(PILRA, 6402_8_3)	1.2870909	[1.26-1.31] unit decrease	Illumina [> 1000000] (imputed)	N
1348	chr7	100096741	100096742	rs60644673	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	7q22.1		rs60644673-T	NR	3E-12		0.0203	[0.015-0.026] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
1348	chr7	100098294	100098295	rs6974282	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	7q22.1	NYAP1	rs6974282-C	0.804155	2E-8		0.0100558	[0.0066-0.0135] unit increase	Affymetrix [12370749]	N
1348	chr7	100098295	100098296	rs6974286	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	7q22.1		rs6974286-T	0.196199	3E-95		0.06587973	[0.06-0.072] unit decrease	Affymetrix [93095623] (imputed)	N
1348	chr7	100098679	100098680	rs6978739	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q22.1	NR	rs6978739-G	0.160631	7E-41				Affymetrix, Illumina [24588908] (imputed)	N
1348	chr7	100099465	100099466	rs4385401	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	7q22.1	NR	rs4385401-C	0.19889	1E-43		0.032031	[0.027-0.037] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1348	chr7	100103522	100103523	rs140607780	25935875	Varenhorst C	2015-05-02	Eur Heart J	Effect of genetic variations on ticagrelor plasma levels and clinical outcomes.	Ticagrelor levels in individuals with acute coronary syndromes treated with ticagrelor	1,794 European ancestry cases, 18 African and Asian ancestry cases	1,922 European ancestry cases, 19 African and Asian ancestry cases	7q22.1	NR	rs140607780-G	0.016	3E-11		0.273	[0.19-0.35] unit increase	Illumina [10962468] (imputed)	N
1348	chr7	100106713	100106714	rs73154884	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	7q22.1	RP11-44M6.1	rs73154884-T	0.062697	4E-15		0.036444042	[0.027-0.046] unit decrease	Affymetrix [93095623] (imputed)	N
1348	chr7	100106713	100106714	rs73154884	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	7q22.1	RP11-44M6.1	rs73154884-T	0.062767	5E-15		0.036363486	[0.027-0.045] unit decrease	Affymetrix [93095623] (imputed)	N
1348	chr7	100106713	100106714	rs73154884	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	7q22.1	RP11-44M6.1	rs73154884-T	0.062764	7E-18		0.040027827	[0.031-0.049] unit decrease	Affymetrix [93095623] (imputed)	N
1348	chr7	100120486	100120487	rs7779608	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	7q22.1		rs7779608-C	NR	8E-9		0.0141	[0.0092-0.019] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
1348	chr7	100129948	100129948	rs772127444	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	7q22.1	RN7SL416P	rs772127444-TAC	0.062017	6E-10		0.029339543	[0.02-0.039] unit increase	Affymetrix [93095623] (imputed)	N
1348	chr7	100134685	100134686	rs554093579	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	7q22.1	AGFG2	rs554093579-C	0.007	1E-14		0.1758467	[0.13-0.22] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1349	chr7	100141446	100141447	rs7777462	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7q22.1	NR	rs7777462-G	0.02091	2E-9	(SBDS)	0.0418	NR unit increase	Illumina [1671387] (imputed)	N
1349	chr7	100159566	100159567	rs2734897	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	7q22.1	NR	rs2734897-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
1349	chr7	100161383	100161384	rs555006728	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	7q22.1		rs555006728-C	0.0055608	7E-7		0.22444	[0.14-0.31] unit decrease	Affymetrix [15580782] (imputed)	N
1349	chr7	100167155	100167156	rs117722415	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Testosterone levels	310,461 European ancestry individuals, 5,453 African ancestry individuals, 6,680 South Asian ancestry individuals	NA	7q22.1	NR	rs117722415-A	NR	6E-18		0.0633	[0.049-0.078] unit decrease	Affymetrix [9000000] (imputed)	N
1349	chr7	100172857	100172858	rs3197597	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	7q22.1	LRCH4	rs3197597-?	NR	6E-10		0.6131	[0.42-0.8] unit increase	Affymetrix [11100000] (imputed)	N
1349	chr7	100175472	100175473	rs909152	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	7q22.1	STAB1, NT5DC2, SMIM4, PBRM1, GNL3, GLT8D1, SPCS1, NEK4, ITIH1, ITIH3, ITIH4, RP5-966M1.6	rs909152-?		2E-11				NR [7428630] (imputed)	N
1349	chr7	100178176	100178177	rs35061193	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	7q22.1	AZGP1, ZKSCAN1, ZSCAN21, ZNF3, COPS6, MCM7, AP4M1, TAF6, CNPY4, MBLAC1, LAMTOR4, C7orf43, GAL3ST4, GPC2, STAG3, GATS, PVRIG, SPDYE3, PILRB, PILRA, ZCWPW1, MEPCE, PPP1R35, C7orf61, TSC22D4, NYAP1, AGFG2, LRCH4, SAP25, FBXO24, PCOLCE	rs35061193-?		6E-15				NR [7428630] (imputed)	N
1349	chr7	100186110	100186111	rs61318457	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	7q22.1	FBXO24	rs61318457-T	0.066237	1E-14		0.03539961	[0.026-0.044] unit increase	Affymetrix [93095623] (imputed)	N
1349	chr7	100197865	100197866	rs62482222	34957435	Bonfiglio F	2021-12-08	Cell Genom	GWAS of stool frequency provides insights into gastrointestinal motility and irritable bowel syndrome.	Stool frequency	167,875 European ancestry individuals	NA	7q22.1		rs62482222-A	0.118	1E-8		0.023	[0.015-0.031] unit increase	Affymetrix, Illumina [8817117] (imputed)	N
1349	chr7	100212253	100212254	rs12532878	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular hemoglobin	up to 21,020 European ancestry individuals, up to 3,621 African American individuals, up to 15,062 East Asian individuals.	16,389 individuals of European and African American ancestry.	7q22.1	MOSPD3	rs12532878-A	NR	6E-8	(Asian)	0.0061	[0.0039-0.0083] unit decrease	NR [2500000] (imputed)	N
1349	chr7	100214014	100214015	rs7786877	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	7q22.1	MOSPD3, TFR2	rs7786877-G	0.239347	4E-15		0.020792704	[0.016-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1349	chr7	100214014	100214015	rs7786877	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular hemoglobin	up to 21,020 European ancestry individuals, up to 3,621 African American individuals, up to 15,062 East Asian individuals.	16,389 individuals of European and African American ancestry.	7q22.1	TFR2, ACTL6B	rs7786877-?	NR	1E-13				NR [2500000] (imputed)	N
1349	chr7	100214014	100214015	rs7786877	19862010	Ganesh SK	2009-10-11	Nat Genet	Multiple loci influence erythrocyte phenotypes in the CHARGE Consortium.	Mean corpuscular volume	24,167 European ancestry individuals	9,456 European ancestry individuals	7q22.1	TFR2	rs7786877-G	NR	3E-11		0.0	[0.002-0.004] fl increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1349	chr7	100216772	100216773	rs10953298	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large LDL	115,082 European ancestry individuals	NA	7q22.1		rs10953298-C	0.764437	3E-8		0.0267997	[0.017-0.036] unit increase	NR [11722792] (imputed)	N
1349	chr7	100216772	100216773	rs10953298	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large LDL	115,082 European ancestry individuals	NA	7q22.1		rs10953298-C	0.764437	1E-8		0.0277658	[0.018-0.037] unit increase	NR [11722792] (imputed)	N
1349	chr7	100216772	100216773	rs10953298	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in LDL	115,082 European ancestry individuals	NA	7q22.1		rs10953298-C	0.764437	4E-8		0.0268724	[0.017-0.036] unit increase	NR [11722792] (imputed)	N
1349	chr7	100216772	100216773	rs10953298	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	LDL cholesterol levels	115,082 European ancestry individuals	NA	7q22.1		rs10953298-C	0.764437	3E-8		0.0271287	[0.018-0.037] unit increase	NR [11722792] (imputed)	N
1349	chr7	100216772	100216773	rs10953298	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small LDL	115,082 European ancestry individuals	NA	7q22.1		rs10953298-C	0.764437	5E-9		0.0286191	[0.019-0.038] unit increase	NR [11722792] (imputed)	N
1349	chr7	100216772	100216773	rs10953298	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	7q22.1		rs10953298-C	0.764437	5E-9		0.0285301	[0.019-0.038] unit increase	NR [11722792] (imputed)	N
1349	chr7	100216772	100216773	rs10953298	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large LDL	115,082 European ancestry individuals	NA	7q22.1		rs10953298-C	0.764437	4E-9		0.0281904	[0.019-0.038] unit increase	NR [11722792] (imputed)	N
1349	chr7	100216772	100216773	rs10953298	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in LDL	115,082 European ancestry individuals	NA	7q22.1		rs10953298-C	0.764437	3E-9		0.0286315	[0.019-0.038] unit increase	NR [11722792] (imputed)	N
1349	chr7	100216772	100216773	rs10953298	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in IDL	115,082 European ancestry individuals	NA	7q22.1		rs10953298-C	0.764437	5E-9		0.0277048	[0.018-0.037] unit increase	NR [11722792] (imputed)	N
1349	chr7	100216772	100216773	rs10953298	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Clinical LDL cholesterol levels	115,082 European ancestry individuals	NA	7q22.1		rs10953298-C	0.764437	7E-9		0.028206	[0.019-0.038] unit increase	NR [11722792] (imputed)	N
1349	chr7	100216772	100216773	rs10953298	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large LDL	115,082 European ancestry individuals	NA	7q22.1		rs10953298-C	0.764437	4E-8		0.0266279	[0.017-0.036] unit increase	NR [11722792] (imputed)	N
1349	chr7	100216772	100216773	rs10953298	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large LDL	115,082 European ancestry individuals	NA	7q22.1		rs10953298-C	0.764437	2E-8		0.0272502	[0.018-0.037] unit increase	NR [11722792] (imputed)	N
1349	chr7	100216772	100216773	rs10953298	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in IDL	115,082 European ancestry individuals	NA	7q22.1		rs10953298-C	0.764437	2E-8		0.0263861	[0.017-0.036] unit increase	NR [11722792] (imputed)	N
1349	chr7	100216772	100216773	rs10953298	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	7q22.1		rs10953298-T	NR	1E-12		0.0188	[0.014-0.024] unit decrease	Affymetrix, Illumina [20521447] (imputed)	N
1349	chr7	100216772	100216773	rs10953298	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	7q22.1	MOSPD3, TFR2	rs10953298-T	0.23636	2E-12		0.018825203	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1349	chr7	100216772	100216773	rs10953298	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	7q22.1	TFR2	rs10953298-C	0.763749	3E-12		0.0171918	[0.012-0.022] unit increase	Affymetrix [NR] (imputed)	N
1349	chr7	100216772	100216773	rs10953298	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	7q22.1	POP7	rs10953298-?	NR	2E-17		0.0258	[0.021-0.031] unit decrease	Affymetrix [5701386] (imputed)	N
1349	chr7	100218511	100218512	rs80338891	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean sphered cell volume	437,736 European ancestry individuals	NA	7q22.1		rs80338891-?	NR	1E-9		0.676998	[0.47-0.89] unit increase	NR [9800000] (imputed)	N
1349	chr7	100218511	100218512	rs80338891	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean corpuscular volume	444,035 European ancestry individuals	NA	7q22.1		rs80338891-?	NR	3E-34		1.25313	[1.05-1.46] unit increase	NR [9800000] (imputed)	N
1349	chr7	100218511	100218512	rs80338891	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean corpuscular hemoglobin concentration	443,081 European ancestry individuals	NA	7q22.1		rs80338891-?	NR	8E-32		1.18782	[0.98-1.39] unit increase	NR [9800000] (imputed)	N
1349	chr7	100218630	100218631	rs41295942	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	7q22.1	TFR2	rs41295942-T	0.030791	2E-24		0.065816104	[0.053-0.078] unit decrease	Affymetrix [93095623] (imputed)	N
1349	chr7	100218630	100218631	rs41295942	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	7q22.1	TFR2	rs41295942-T	0.030829	4E-10		0.040700655	[0.028-0.053] unit increase	Affymetrix [93095623] (imputed)	N
1349	chr7	100218630	100218631	rs41295942	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	7q22.1	TFR2	rs41295942-T	0.03079	1E-43		0.118795	[0.11-0.13] unit increase	Affymetrix [93095623] (imputed)	N
1349	chr7	100218630	100218631	rs41295942	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	7q22.1	TFR2	rs41295942-T	0.030795	1E-17		0.0724276	[0.06-0.085] unit increase	Affymetrix [93095623] (imputed)	N
1349	chr7	100218630	100218631	rs41295942	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	7q22.1	TFR2	rs41295942-T	0.030797	6E-59		0.10413723	[0.092-0.117] unit increase	Affymetrix [93095623] (imputed)	N
1349	chr7	100218630	100218631	rs41295942	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	7q22.1	TFR2	rs41295942-T	0.030798	2E-15		0.05129591	[0.039-0.064] unit increase	Affymetrix [93095623] (imputed)	N
1349	chr7	100218630	100218631	rs41295942	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	7q22.1	TFR2	rs41295942-T	0.0356	2E-13		0.08518536	[0.062-0.108] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1349	chr7	100221848	100221849	rs4729597	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	7q22.1	NR	rs4729597-T	0.633589	1E-363		0.078156	[0.074-0.082] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1349	chr7	100221848	100221849	rs4729597	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q22.1	NR	rs4729597-T	0.674972	5E-387				Affymetrix, Illumina [24246363] (imputed)	N
1349	chr7	100221848	100221849	rs4729597	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	126,151 East Asian ancestry individuals	NA	7q22.1	NR	rs4729597-C	0.150765	5E-14		0.042637	[0.032-0.054] SD units decrease	Affymetrix, Illumina [16289083] (imputed)	N
1349	chr7	100221848	100221849	rs4729597	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	7q22.1		rs4729597-?	NR	1E-300				NR [~ 8900000] (imputed)	N
1349	chr7	100221848	100221849	rs4729597	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	7q22.1	PCOLCE	rs4729597-T	0.64421875	2E-12	(PCOLCE, 11237_49_3)	0.17991823	[0.13-0.23] unit increase	Illumina [> 1000000] (imputed)	N
1349	chr7	100224386	100224387	rs201556221	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Red cell distribution width	441,263 European ancestry individuals	NA	7q22.1		rs201556221-?	NR	8E-15		0.256064	[0.19-0.32] unit decrease	NR [9800000] (imputed)	N
1349	chr7	100224386	100224387	rs201556221	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean corpuscular volume	444,035 European ancestry individuals	NA	7q22.1		rs201556221-?	NR	2E-22		0.284261	[0.22-0.35] unit increase	NR [9800000] (imputed)	N
1349	chr7	100224386	100224387	rs201556221	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean corpuscular hemoglobin concentration	443,081 European ancestry individuals	NA	7q22.1		rs201556221-?	NR	4E-34		0.374057	[0.31-0.44] unit increase	NR [9800000] (imputed)	N
1349	chr7	100224636	100224636	rs35142847	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	7q22.1	NR	rs35142847-I	0.636125	1E-388		0.087845	[0.084-0.092] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
1349	chr7	100225192	100225193	rs41295912	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	7q22.1	TFR2	rs41295912-A	0.00708500000000001	6E-18		0.11589837	[0.09-0.142] unit decrease	Affymetrix [93095623] (imputed)	N
1349	chr7	100225846	100225847	rs139178017	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Red cell distribution width	441,263 European ancestry individuals	NA	7q22.1		rs139178017-?	NR	8E-29		0.15023	[0.12-0.18] unit decrease	NR [9800000] (imputed)	N
1349	chr7	100225846	100225847	rs139178017	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Hemoglobin A1c levels	437,749 European ancestry individuals	NA	7q22.1		rs139178017-?	NR	7E-14		0.0990085	[0.072-0.126] unit decrease	NR [9800000] (imputed)	N
1349	chr7	100225846	100225847	rs139178017	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	7q22.1	TFR2	rs139178017-T	0.00516899999999998	3E-20		0.14274807	[0.11-0.17] unit decrease	Affymetrix [93095623] (imputed)	N
1349	chr7	100225846	100225847	rs139178017	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	7q22.1	TFR2	rs139178017-T	0.0049	7E-10		0.1600017	[0.11-0.21] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1349	chr7	100225846	100225847	rs139178017	24777453	Auer PL	2014-04-28	Nat Genet	Rare and low-frequency coding variants in CXCR2 and other genes are associated with hematological traits.	Hemoglobin levels	24,814 European ancestry individuals	6,526 European ancestry individuals	7q22.1	TRF2	rs139178017-T	0.0042	3E-6		0.321	[0.19-0.46] unit increase	Illumina [183585]	N
1349	chr7	100226664	100226665	rs4548095	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	7q22.1	TFR2	rs4548095-T	0.633273	4E-53		0.036507037	[0.032-0.041] unit increase	Affymetrix [93095623] (imputed)	N
1349	chr7	100226664	100226665	rs4548095	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	7q22.1	NR	rs4548095-T	0.633216	2E-369		0.077358	[0.074-0.081] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
1349	chr7	100226664	100226665	rs4548095	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin concentration	108,728 Japanese ancestry individuals	NA	7q22.1	TFR2	rs4548095-?	NR	9E-15		0.04707	[0.035-0.059] unit increase novel	Illumina [6108953] (imputed)	N
1349	chr7	100226664	100226665	rs4548095	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	7q22.1	TFR2	rs4548095-T	0.6356	2E-10		0.0242055	[0.017-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
1349	chr7	100226901	100226902	rs41303501	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Red blood cell count	445,305 European ancestry individuals	NA	7q22.1		rs41303501-?	NR	3E-23		0.158975	[0.13-0.19] unit increase	NR [9800000] (imputed)	N
1349	chr7	100226901	100226902	rs41303501	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Hemoglobin levels	445,373 European ancestry individuals	NA	7q22.1		rs41303501-?	NR	2E-21		0.156	[0.12-0.19] unit increase	NR [9800000] (imputed)	N
1349	chr7	100226901	100226902	rs41303501	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	7q22.1	TFR2	rs41303501-T	0.00371299999999997	2E-11		0.122509316	[0.087-0.158] unit increase	Affymetrix [93095623] (imputed)	N
1349	chr7	100226901	100226902	rs41303501	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	7q22.1	TFR2	rs41303501-T	0.00371299999999997	2E-19		0.16359897	[0.13-0.2] unit increase	Affymetrix [93095623] (imputed)	N
1349	chr7	100226901	100226902	rs41303501	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	7q22.1	TFR2	rs41303501-T	0.00371100000000002	8E-15		0.14122792	[0.11-0.18] unit increase	Affymetrix [93095623] (imputed)	N
1349	chr7	100228654	100228655	rs41303495	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Hemoglobin levels	445,373 European ancestry individuals	NA	7q22.1		rs41303495-?	NR	1E-14		0.0989528	[0.073-0.125] unit increase	NR [9800000] (imputed)	N
1349	chr7	100228654	100228655	rs41303495	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Hemoglobin A1c levels	437,749 European ancestry individuals	NA	7q22.1		rs41303495-?	NR	2E-13		0.0972509	[0.072-0.123] unit decrease	NR [9800000] (imputed)	N
1349	chr7	100228654	100228655	rs41303495	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	7q22.1	NR	rs41303495-T	NR	2E-10		0.0976	[0.067-0.128] unit decrease	Affymetrix [9000000] (imputed)	N
1349	chr7	100228654	100228655	rs41303495	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	7q22.1	TFR2	rs41303495-T	0.00633399999999995	3E-14		0.10615877	[0.079-0.133] unit increase	Affymetrix [93095623] (imputed)	N
1349	chr7	100231062	100231063	rs187119131	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	7q22.1		rs187119131-C	0.002845	4E-34		0.488566	[0.41-0.57] unit increase	Illumina [13476266] (imputed)	N
1349	chr7	100231062	100231063	rs187119131	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	135,482 East Asian ancestry individuals	NA	7q22.1		rs187119131-C	0.002855	1E-19		0.363603	[0.28-0.44] unit increase	Illumina [13477028] (imputed)	N
1349	chr7	100231062	100231063	rs187119131	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	7q22.1		rs187119131-C	0.002844	7E-58		0.648575	[0.57-0.73] unit increase	Illumina [13476299] (imputed)	N
1349	chr7	100232932	100232933	rs769651870	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	7q22.1	TFR2	rs769651870-A	0.0035	8E-12		0.226117	[0.16-0.29] unit increase	Affymetrix [~ 2500000] (imputed)	N
1349	chr7	100233055	100233055	rs60473539	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	7q22.1	TFR2	rs60473539-AATT	0.808966	8E-13		0.020378187	[0.015-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1349	chr7	100233055	100233055	rs60473539	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	7q22.1	TFR2	rs60473539-AATT	0.808934	3E-9		0.016855929	[0.011-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1349	chr7	100235507	100235508	rs62482241	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	153,512 East Asian ancestry individuals	NA	7q22.1		rs62482241-A	0.14989	2E-27		0.047302	[0.039-0.056] unit increase	Illumina [13479135] (imputed)	N
1349	chr7	100235507	100235508	rs62482241	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	7q22.1	TFR2	rs62482241-A	0.255556	2E-33		0.03105027	[0.026-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
1349	chr7	100235507	100235508	rs62482241	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	150,708 East Asian ancestry individuals	NA	7q22.1	NR	rs62482241-G	0.847922	2E-28		0.056493	[0.046-0.067] SD units decrease	Affymetrix, Illumina [16709798] (imputed)	N
1349	chr7	100235507	100235508	rs62482241	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Red blood cell count	108,794 Japanese ancestry individuals	NA	7q22.1	TFR2	rs62482241-?	NR	2E-18		0.05201	[0.04-0.064] unit increase novel	Illumina [6108953] (imputed)	N
1349	chr7	100235507	100235508	rs62482241	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin	108,054 Japanese ancestry individuals	NA	7q22.1	TFR2	rs62482241-?	NR	5E-21		0.05604	[0.044-0.068] unit decrease novel	Illumina [6108953] (imputed)	N
1349	chr7	100235969	100235970	rs7385804	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PCOLCE	5,365 Icelandic ancestry individuals	NA	7q22.1		rs7385804-C	0.359	6E-15		0.151607	[0.11-0.19] unit decrease	Illumina [7506463] (imputed)	N
1349	chr7	100235969	100235970	rs7385804	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	7q22.1		rs7385804-A	NR	4E-182		0.0631	[0.059-0.067] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
1349	chr7	100235969	100235970	rs7385804	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	7q22.1		rs7385804-A	NR	4E-78		0.0411	[0.037-0.045] unit increase	Affymetrix, Illumina [20536605] (imputed)	N
1349	chr7	100235969	100235970	rs7385804	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	7q22.1		rs7385804-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1349	chr7	100235969	100235970	rs7385804	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	7q22.1		rs7385804-C	0.377	6E-15				Affymetrix [10369434] (imputed)	N
1349	chr7	100235969	100235970	rs7385804	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Red blood cell count	20,220 Amish, White ancestry individuals, 384 Asian ancestry individuals, 10,747 Black individuals, 13,119 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	7q22.1		rs7385804-A	NR	2E-26		0.03	[0.03-0.03] unit decrease	Illumina [92652022]	N
1349	chr7	100235969	100235970	rs7385804	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular volume	22,267 Amish, White ancestry individuals, 447 Asian ancestry individuals, 12,285 Black individuals, 13,831 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	7q22.1		rs7385804-A	NR	4E-23		0.37	[0.29-0.45] unit increase	Illumina [97506867]	N
1349	chr7	100235969	100235970	rs7385804	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular hemoglobin	20,714 Amish, White ancestry individuals, 447 Asian ancestry individuals, 11,246 Black individuals, 13,834 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	7q22.1		rs7385804-A	NR	2E-27		0.17	[0.13-0.21] unit increase	Illumina [94681438]	N
1349	chr7	100235969	100235970	rs7385804	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Hematocrit	33,324 Amish, White ancestry individuals, 654 Asian ancestry individuals, 14,474 Black individuals, 14,035 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	7q22.1		rs7385804-A	NR	1E-12		0.15	[0.11-0.19] unit decrease	Illumina [110396782]	N
1349	chr7	100235969	100235970	rs7385804	33536631	Bell S	2021-02-03	Commun Biol	A genome-wide meta-analysis yields 46 new loci associating with biomarkers of iron homeostasis.	Iron status biomarkers (transferrin saturation)	131,471 European ancestry individuals	NA	7q22.1	TFR2	rs7385804-C	0.371	3E-39		0.062	[0.071-0.053] SD decrease	Affymetrix, Illumina [40000000] (imputed)	N
1349	chr7	100235969	100235970	rs7385804	33536631	Bell S	2021-02-03	Commun Biol	A genome-wide meta-analysis yields 46 new loci associating with biomarkers of iron homeostasis.	Iron status biomarkers (iron levels)	163,511 European ancestry individuals	NA	7q22.1	TFR2	rs7385804-C	0.371	9E-43		0.057	[0.065-0.049] SD decrease	Affymetrix, Illumina [40000000] (imputed)	N
1349	chr7	100235969	100235970	rs7385804	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	7q22.1	TFR2	rs7385804-A	0.624632	9E-15		0.018173123	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1349	chr7	100235969	100235970	rs7385804	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	7q22.1	TFR2	rs7385804-A	0.624652	2E-22		0.02272224	[0.018-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1349	chr7	100235969	100235970	rs7385804	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	7q22.1	NR	rs7385804-A	0.623618	1E-117		0.047584	[0.044-0.052] SD unit increase	Affymetrix, Illumina [50282193] (imputed)	N
1349	chr7	100235969	100235970	rs7385804	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red blood cell count	8,679 African American individuals, 17,412 Hispanic or Latin American individuals, 14,690 European ancestry individuals, 127 Asian ancestry individuals, 20 Native American ancestry individuals, 382 individuals	NA	7q22.1		rs7385804-?	0.3457	7E-16		0.025	[0.019-0.031] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
1349	chr7	100235969	100235970	rs7385804	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red blood cell count	17,412 Hispanic or Latin American individuals	NA	7q22.1		rs7385804-?	0.2962	7E-9		0.0271	[0.018-0.036] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
1349	chr7	100235969	100235970	rs7385804	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red blood cell count	14,690 European ancestry individuals	NA	7q22.1		rs7385804-?	0.3708	3E-9		0.027	[0.018-0.036] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
1349	chr7	100235969	100235970	rs7385804	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular volume	8,556 African American individuals, 17,141 Hispanic or Latin American individuals, 14,483 European ancestry individuals, 125 Asian ancestry individuals, 594 Native American ancestry individuals, 377 individuals	NA	7q22.1		rs7385804-?	0.3457	2E-11		0.2714	[0.19-0.35] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
1349	chr7	100235969	100235970	rs7385804	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular volume	14,483 European ancestry individuals	NA	7q22.1		rs7385804-?	0.3708	1E-9		0.3308	[0.22-0.44] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
1349	chr7	100235969	100235970	rs7385804	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin	8,694 African American individuals, 17,400 Hispanic or Latin American individuals, 14,693 European ancestry individuals, 127 Asian ancestry individuals, 20 Native American ancestry individuals, 382 individuals	NA	7q22.1		rs7385804-?	0.3457	1E-14		0.1191	[0.089-0.149] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
1349	chr7	100235969	100235970	rs7385804	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin	14,693 European ancestry individuals	NA	7q22.1		rs7385804-?	0.3708	3E-10		0.1347	[0.093-0.177] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
1349	chr7	100235969	100235970	rs7385804	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Hemoglobin concentration	16,186 African American individuals, 20,692 Hispanic or Latin American individuals, 29,379 European ancestry individuals, 630 Asian ancestry individuals, 601 Native American ancestry individuals, 381 individuals	NA	7q22.1		rs7385804-?	0.3457	3E-6		0.0296	[0.017-0.042] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
1349	chr7	100235969	100235970	rs7385804	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Hematocrit	29,383 European ancestry individuals	NA	7q22.1		rs7385804-?	0.3708	1E-6		0.1201	[0.071-0.169] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
1349	chr7	100235969	100235970	rs7385804	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Hematocrit	16,184 African American individuals, 20,704 Hispanic or Latin American individuals, 29,383 European ancestry individuals, 631 Asian ancestry individuals, 601 Native American ancestry individuals, 381 individuals	NA	7q22.1		rs7385804-?	0.3457	2E-10		0.117	[0.081-0.153] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
1349	chr7	100235969	100235970	rs7385804	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	7q22.1		rs7385804-?	NR	1E-300				NR [~ 8900000] (imputed)	N
1349	chr7	100235969	100235970	rs7385804	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular volume	up to 29,946 European ancestry individuals, up to 6150 African American individuals, 15,074 East Asian individuals.	16,389 individuals of European and African American ancestry.	7q22.1	TFR2	rs7385804-A	NR	1E-7	(Asian)	0.0046	[0.0028-0.0064] unit increase	NR [2500000] (imputed)	N
1349	chr7	100235969	100235970	rs7385804	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	7q22.1	TFR2	rs7385804-A	0.6251	4E-90		0.07396288	[0.067-0.081] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1349	chr7	100235969	100235970	rs7385804	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	7q22.1	TFR2	rs7385804-A	0.6251	9E-85		0.07115317	[0.064-0.078] unit increase	Affymetrix [~ 2500000] (imputed)	N
1349	chr7	100235969	100235970	rs7385804	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	7q22.1	TFR2	rs7385804-A	0.6252	3E-116		0.08382952	[0.077-0.091] unit increase	Affymetrix [~ 2500000] (imputed)	N
1349	chr7	100235969	100235970	rs7385804	25352340	Benyamin B	2014-10-29	Nat Commun	Novel loci affecting iron homeostasis and their effects in individuals at risk for hemochromatosis.	Iron status biomarkers (transferrin saturation)	23,986 European ancestry individuals	Up to 24,986 European ancestry individuals	7q22.1	TFR2	rs7385804-A	0.621	6E-12		0.054	[0.038-0.07] unit increase	Affymetrix, Illumina [~ 2100000] (imputed)	N
1349	chr7	100235969	100235970	rs7385804	25352340	Benyamin B	2014-10-29	Nat Commun	Novel loci affecting iron homeostasis and their effects in individuals at risk for hemochromatosis.	Iron status biomarkers (iron levels)	23,986 European ancestry individuals	Up to 24,986 European ancestry individuals	7q22.1	TFR2	rs7385804-A	0.621	1E-18		0.064	[0.050-0.078] unit increase	Affymetrix, Illumina [~ 2100000] (imputed)	N
1349	chr7	100235969	100235970	rs7385804	21208937	Pichler I	2011-01-04	Hum Mol Genet	Identification of a common variant in the TFR2 gene implicated in the physiological regulation of serum iron levels.	Iron status biomarkers	Up to 5,633 European ancestry individuals	Up to 3,457 European ancestry individuals	7q22.1	TFR2	rs7385804-A	0.65	7E-8	(iron)	3.23	[2.05-4.41] ug/dl increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1349	chr7	100235969	100235970	rs7385804	19862010	Ganesh SK	2009-10-11	Nat Genet	Multiple loci influence erythrocyte phenotypes in the CHARGE Consortium.	Hematocrit	24,167 European ancestry individuals	9,456 European ancestry individuals	7q22.1	TFR2	rs7385804-C	NR	4E-10		0.15	[0.10-0.20] % decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1349	chr7	100235969	100235970	rs7385804	19820697	Soranzo N	2009-10-11	Nat Genet	A genome-wide meta-analysis identifies 22 loci associated with eight hematological parameters in the HaemGen consortium.	Hematological parameters	4,627 European ancestry individuals	9,316 European ancestry individuals	7q22.1	TFR2	rs7385804-C	NR	5E-10	(RBC)	0.01	[0.004-0.008] 10^12/l increase	Affymetrix, Illumina [~ 2110000] (imputed)	N
1349	chr7	100236201	100236202	rs9801017	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	7q22.1		rs9801017-A	NR	4E-275		0.0777	[0.073-0.082] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
1349	chr7	100236201	100236202	rs9801017	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	7q22.1		rs9801017-G	0.376	6E-168		0.31	[-0.34--0.29] % decrease	Affymetrix [NR] (imputed)	N
1349	chr7	100236201	100236202	rs9801017	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q22.1	NR	rs9801017-G	0.373626	3E-160				Affymetrix, Illumina [22063850] (imputed)	N
1349	chr7	100236201	100236202	rs9801017	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	7q22.1	NR	rs9801017-G	0.37566	4E-158		0.052046	[0.048-0.056] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
1349	chr7	100236201	100236202	rs9801017	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	121,047 East Asian ancestry individuals	NA	7q22.1	NR	rs9801017-G	0.151961	1E-13		0.041977	[0.031-0.053] SD units decrease	Affymetrix, Illumina [16286195] (imputed)	N
1349	chr7	100236201	100236202	rs9801017	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	7q22.1	PCOLCE	rs9801017-A	0.636	1E-16	(Procollagen C-endopeptidase enhancer 1, PCOLCE.11237.49.3)	0.21	[0.15-0.27] unit increase	Affymetrix [10572788] (imputed)	N
1349	chr7	100236201	100236202	rs9801017	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	7q22.1	TFR2	rs9801017-A	NR	7E-28		0.0436834	[0.036-0.052] unit decrease	Affymetrix [16832071] (imputed)	N
1349	chr7	100236201	100236202	rs9801017	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	7q22.1	TFR2	rs9801017-A	0.6258	9E-37		0.04634026	[0.039-0.054] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1349	chr7	100237202	100237202	rs564636753	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	7q22.1	TFR2	rs564636753-GA	0.2071	2E-9		0.02694786	[0.018-0.036] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1349	chr7	100237202	100237202	rs564636753	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	7q22.1	TFR2	rs564636753-GA	0.2071	2E-12		0.03208446	[0.023-0.041] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1349	chr7	100237596	100237597	rs6958696	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	7q22.1	TFR2	rs6958696-T	0.20931	3E-9		0.01667045	[0.011-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1349	chr7	100238524	100238525	rs41302360	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	152,447 East Asian ancestry individuals	NA	7q22.1		rs41302360-C	0.020841	3E-13		0.0852109	[0.062-0.108] unit decrease	Illumina [13478948] (imputed)	N
1349	chr7	100239421	100239422	rs531909210	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	7q22.1	TFR2	rs531909210-A	0.00539000000000001	3E-9		0.120019	[0.093-0.148] unit increase	Affymetrix [93095623] (imputed)	N
1349	chr7	100239421	100239422	rs531909210	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	7q22.1	TFR2	rs531909210-A	0.00538799999999995	2E-15		0.11963942	[0.09-0.149] unit increase	Affymetrix [93095623] (imputed)	N
1349	chr7	100239421	100239422	rs531909210	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	7q22.1	TFR2	rs531909210-A	0.00540099999999999	2E-25		0.15696938	[0.13-0.19] unit increase	Affymetrix [93095623] (imputed)	N
1349	chr7	100239421	100239422	rs531909210	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	7q22.1	TFR2	rs531909210-A	0.00540399999999996	5E-16		0.12220188	[0.093-0.152] unit increase	Affymetrix [93095623] (imputed)	N
1349	chr7	100239421	100239422	rs531909210	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	7q22.1	ACTL6B	rs531909210-A	NR	1E-8		0.191794	[0.13-0.26] unit decrease	Affymetrix [16832071] (imputed)	N
1349	chr7	100239421	100239422	rs531909210	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	7q22.1	TFR2	rs531909210-A	0.0045	2E-16		0.235309	[0.18-0.29] unit increase	Affymetrix [~ 2500000] (imputed)	N
1349	chr7	100240190	100240191	rs4434553	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	7q22.1	TFR2	rs4434553-G	0.4942	9E-16		0.02882652	[0.022-0.036] unit increase	Affymetrix [~ 2500000] (imputed)	N
1349	chr7	100240295	100240296	rs2075672	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	7q22.1		rs2075672-G	NR	9E-231		0.0613	[0.058-0.065] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
1349	chr7	100240295	100240296	rs2075672	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	7q22.1	TFR2	rs2075672-G	0.624412	8E-38		0.03025388	[0.026-0.035] unit increase	Affymetrix [93095623] (imputed)	N
1349	chr7	100240295	100240296	rs2075672	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	7q22.1	TFR2	rs2075672-G	0.624585	6E-90		0.04669316	[0.042-0.051] unit decrease	Affymetrix [93095623] (imputed)	N
1349	chr7	100240295	100240296	rs2075672	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	7q22.1	TFR2	rs2075672-G	0.624446	9E-131		0.063053235	[0.058-0.068] unit decrease	Affymetrix [93095623] (imputed)	N
1349	chr7	100240295	100240296	rs2075672	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	7q22.1	TFR2	rs2075672-G	0.624489	4E-232		0.0795757	[0.075-0.084] unit increase	Affymetrix [93095623] (imputed)	N
1349	chr7	100240295	100240296	rs2075672	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	7q22.1	TFR2	rs2075672-A	0.624433	2E-96		0.0497287	[0.045-0.054] unit increase	Affymetrix [93095623] (imputed)	N
1349	chr7	100240295	100240296	rs2075672	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	7q22.1	TFR2	rs2075672-G	0.624521	9E-302		0.08548132	[0.081-0.09] unit increase	Affymetrix [93095623] (imputed)	N
1349	chr7	100240295	100240296	rs2075672	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q22.1	NR	rs2075672-G	0.668824	1E-129				Affymetrix, Illumina [21126107] (imputed)	N
1349	chr7	100240295	100240296	rs2075672	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	119,629 East Asian ancestry individuals	NA	7q22.1	NR	rs2075672-A	0.152643	5E-25		0.058551	[0.047-0.07] SD units decrease	Affymetrix, Illumina [16286228] (imputed)	N
1349	chr7	100240295	100240296	rs2075672	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	7q22.1		rs2075672-?	NR	1E-134				NR [~ 8900000] (imputed)	N
1349	chr7	100240295	100240296	rs2075672	28453575	Hodonsky CJ	2017-04-28	PLoS Genet	Genome-wide association study of red blood cell traits in Hispanics/Latinos: The Hispanic Community Health Study/Study of Latinos.	Red blood cell count	12,502 Hispanic/Latino individuals	4,772 Hispanic/Latino individuals	7q22.1	TFR2, PRKAG2, MOSPD3	rs2075672-A	0.30	1E-8		0.028	[0.0084-0.0476] cells x E9 increase	Illumina [27801688] (imputed)	N
1349	chr7	100240295	100240296	rs2075672	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Red blood cell count	up to 40,258 European ancestry individuals, up to 16,128 African American individuals, up to 15,252 East Asian individuals.	16,389 individuals of European and African American ancestry.	7q22.1	TFR2, ACTL6B	rs2075672-?	NR	3E-16				NR [2500000] (imputed)	N
1349	chr7	100240295	100240296	rs2075672	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular volume	up to 29,946 European ancestry individuals, up to 6150 African American individuals, 15,074 East Asian individuals.	16,389 individuals of European and African American ancestry.	7q22.1	TFR2, ACTL6B	rs2075672-?	NR	1E-8				NR [2500000] (imputed)	N
1349	chr7	100240295	100240296	rs2075672	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Hemoglobin levels	up to 40,258 European ancestry individuals, 16,128 African American individuals, up to 15,252 East Asian ancestry individuals.	16,389 European and African American individuals	7q22.1	TFR2, ACTL6B	rs2075672-?	NR	1E-8				Affymetrix, Illumina [2500000] (imputed)	N
1349	chr7	100240295	100240296	rs2075672	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Hematocrit	up to 40,258 European ancestry individuals, up to 16,128 African American individuals, up to 15,252 East Asian ancestry individuals.	16,389 European and African American individuals	7q22.1	TFR2, ACTL6B	rs2075672-?	NR	1E-8				NR [2500000] (imputed)	N
1349	chr7	100240295	100240296	rs2075672	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Hematocrit	up to 40,258 European ancestry individuals, up to 16,128 African American individuals, up to 15,252 East Asian ancestry individuals.	16,389 European and African American individuals	7q22.1	ACTL6B	rs2075672-A	NR	6E-9	(Asian)	0.2508	[0.17-0.34] percentage increase	NR [2500000] (imputed)	N
1349	chr7	100240295	100240296	rs2075672	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	7q22.1	TFR2	rs2075672-G	0.6254	2E-13		0.02772454	[0.02-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
1349	chr7	100240295	100240296	rs2075672	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin concentration	172,851 European ancestry individuals	NA	7q22.1	TFR2	rs2075672-G	0.6253	5E-42		0.0485978	[0.042-0.056] unit increase	Affymetrix [~ 2500000] (imputed)	N
1349	chr7	100240295	100240296	rs2075672	23222517	van der Harst P	2012-12-05	Nature	Seventy-five genetic loci influencing the human red blood cell.	Red blood cell traits	62,553 European ancestry individuals, 9,308 South Asian ancestry individuals	63,506 European ancestry individuals	7q22.1	ACTL6B, TFR2	rs2075672-A	0.39	2E-20	(EA, RBCC)	0.022	[0.016-0.028] unit increase	Affymetrix, Illumina, Perlegen [2711806] (imputed)	N
1349	chr7	100242410	100242411	rs7383856	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular volume	108,256 Japanese ancestry individuals	NA	7q22.1	ACTL6B	rs7383856-?	NR	4E-15		0.03573	[0.027-0.045] unit increase novel	Illumina [6108953] (imputed)	N
1349	chr7	100243410	100243411	rs10953299	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	153,015 East Asian ancestry individuals	NA	7q22.1		rs10953299-C	0.183864	2E-12		0.0291321	[0.021-0.037] unit increase	Illumina [13478961] (imputed)	N
1349	chr7	100243410	100243411	rs10953299	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Hematocrit	108,757 Japanese ancestry individuals	NA	7q22.1	ACTL6B	rs10953299-?	NR	1E-10		0.03871	[0.027-0.05] unit increase novel	Illumina [6108953] (imputed)	N
1349	chr7	100245875	100245876	rs11770534	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	7q22.1		rs11770534-C	0.2	1E-10		6.44	z score increase	Affymetrix [9061022] (imputed)	N
1349	chr7	100248900	100248901	rs541590799	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	7q22.1	ACTL6B	rs541590799-T	4.54999999999983E-4	5E-15		0.388518	[0.27-0.51] unit increase	Affymetrix [93095623] (imputed)	N
1349	chr7	100248900	100248901	rs541590799	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	7q22.1	ACTL6B	rs541590799-T	4.54999999999983E-4	1E-22		0.661916	[0.53-0.79] unit increase	Affymetrix [93095623] (imputed)	N
1349	chr7	100261916	100261920	rs150919590	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	7q22.1		rs150919590-G	0.233269	1E-16		0.02265307	[0.017-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1349	chr7	100269692	100269693	rs559249728	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	7q22.1		rs559249728-C	0.0054581	6E-7		0.22792	[0.14-0.32] unit decrease	Affymetrix [15580782] (imputed)	N
1350	chr7	100271438	100271441	rs374292503	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	7q22.1	intergenic	rs374292503-GCGC	0.8528	3E-17		0.3	[0.23-0.37] mmHg increase	Affymetrix [NR] (imputed)	N
1350	chr7	100271520	100271521	rs221789	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	7q22.1		rs221789-T	0.18	6E-13		7.21	z score increase	Affymetrix [9061022] (imputed)	N
1350	chr7	100275443	100275444	rs62482253	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	7q22.1	GNB2	rs62482253-A		2E-71		0.26	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
1350	chr7	100275443	100275444	rs62482253	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	7q22.1	GNB2	rs62482253-A	0.0068	2E-12		0.1776727	[0.13-0.23] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1350	chr7	100275443	100275444	rs62482253	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	7q22.1	GNB2	rs62482253-A	0.0068	3E-15		0.1974682	[0.15-0.25] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1350	chr7	100278281	100278282	rs221790	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q22.1	NR	rs221790-C	0.647751	7E-349				Affymetrix, Illumina [20825802] (imputed)	N
1350	chr7	100278656	100278657	rs221792	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	7q22.1		rs221792-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1350	chr7	100284912	100284913	rs221796	32581359	Saevarsdottir S	2020-06-24	Nature	FLT3 stop mutation increases FLT3 ligand level and risk of autoimmune thyroid disease.	Autoimmune thyroid disease	30,234 European ancestry cases, 724,172 European ancestry controls	NA	7q22.1	GIGYF1	rs221796-G	0.888	7E-10		1.098901	[NR]	Affymetrix, Illumina [42900000] (imputed)	N
1350	chr7	100285973	100285974	rs221797	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	7q22.1	GIGYF1	rs221797-A	0.0992	4E-8		0.0197	[0.013-0.027] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1350	chr7	100287494	100287495	rs221798	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	7q22.1	NR	rs221798-G	NR	4E-14		0.0282	[0.021-0.035] unit decrease	Affymetrix [9000000] (imputed)	N
1350	chr7	100287494	100287495	rs221798	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	7q22.1	NR	rs221798-G	NR	5E-12		0.0259	[0.019-0.033] unit decrease	Affymetrix [9000000] (imputed)	N
1350	chr7	100287494	100287495	rs221798	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	7q22.1	NR	rs221798-G	NR	1E-10		0.0253	[0.018-0.033] unit increase	Affymetrix [9000000] (imputed)	N
1350	chr7	100287494	100287495	rs221798	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	7q22.1	NR	rs221798-G	NR	2E-9		0.0226	[0.015-0.03] unit decrease	Affymetrix [9000000] (imputed)	N
1350	chr7	100287494	100287495	rs221798	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Pursuit maintenance gain in psychotic disorders	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases	NA	7q22.1	GIGYF1	rs221798-?	NR	1E-8	(African)			Illumina [4404269] (imputed)	N
1350	chr7	100287494	100287495	rs221798	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Pursuit maintenance gain	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	7q22.1	GIGYF1	rs221798-C	0.06536	7E-8	(African)			Illumina [4404269] (imputed)	N
1350	chr7	100295907	100295908	rs221781	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Autoimmune traits	approximately 459,000 European ancestry individuals	NA	7q22.1		rs221781-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1350	chr7	100297034	100297035	rs221780	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	7q22.1	POP7	rs221780-G	NR	3E-6	(EA)	1.0719262	[1.04-1.1]	Illumina [6627481] (imputed)	N
1350	chr7	100297034	100297035	rs221780	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	7q22.1	POP7	rs221780-G	NR	1E-7		1.0752687	[1.05-1.1]	Illumina [6627481] (imputed)	N
1350	chr7	100297034	100297035	rs221780	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	7q22.1	intergenic	rs221780-G	NR	3E-7		1.0718113	[1.05-1.1]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1350	chr7	100298903	100298904	rs11772705	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	7q22.1	POP7	rs11772705-C	0.288452	3E-29		0.02830641	[0.023-0.033] unit increase	Affymetrix [93095623] (imputed)	N
1350	chr7	100298903	100298904	rs11772705	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	7q22.1	POP7	rs11772705-C	0.2881	3E-14		0.02979821	[0.022-0.037] unit increase	Affymetrix [~ 2500000] (imputed)	N
1350	chr7	100298983	100298984	rs221774	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	7q22.1		rs221774-?	NR	3E-10				NR [~ 8900000] (imputed)	N
1350	chr7	100298983	100298984	rs221774	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Pursuit maintenance gain in psychotic disorders	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases	NA	7q22.1	POP7	rs221774-?	NR	1E-8	(African)			Illumina [4404269] (imputed)	N
1350	chr7	100306919	100306920	rs182552845	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	7q22.1	POP7	rs182552845-A	0.023085	4E-9		0.04522435	[0.03-0.06] unit decrease	Affymetrix [93095623] (imputed)	N
1350	chr7	100306919	100306920	rs182552845	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	7q22.1	POP7	rs182552845-A	0.023087	8E-10		0.047484983	[0.032-0.063] unit decrease	Affymetrix [93095623] (imputed)	N
1350	chr7	100308810	100308811	rs1734911	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	7q22.1	POP7	rs1734911-C	0.113645	1E-8		0.08131348	[0.053-0.109] unit decrease	Affymetrix [7288503] (imputed)	N
1350	chr7	100309179	100309180	rs143593369	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	7q22.1		rs143593369-G	NR	7E-93		0.2336	[0.21-0.26] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
1350	chr7	100309179	100309180	rs143593369	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	7q22.1		rs143593369-G	NR	2E-88		0.2341	[0.21-0.26] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
1350	chr7	100309179	100309180	rs143593369	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	7q22.1	POP7	rs143593369-G	0.00793500000000003	9E-85		0.26246846	[0.24-0.29] unit decrease	Affymetrix [93095623] (imputed)	N
1350	chr7	100309179	100309180	rs143593369	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	7q22.1	POP7	rs143593369-G	0.00793500000000003	9E-105		0.29312992	[0.27-0.32] unit decrease	Affymetrix [93095623] (imputed)	N
1350	chr7	100309179	100309180	rs143593369	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	7q22.1	POP7	rs143593369-G	0.00793500000000003	3E-102		0.28958994	[0.26-0.32] unit decrease	Affymetrix [93095623] (imputed)	N
1350	chr7	100309179	100309180	rs143593369	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q22.1	NR	rs143593369-G	0.00805675	5E-133				Affymetrix, Illumina [24653286] (imputed)	N
1350	chr7	100309179	100309180	rs143593369	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	7q22.1	NR	rs143593369-G	0.00827	2E-137		0.2916	[0.27-0.31] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
1350	chr7	100309179	100309180	rs143593369	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q22.1	NR	rs143593369-G	0.00805477	5E-137				Affymetrix, Illumina [24558453] (imputed)	N
1350	chr7	100309179	100309180	rs143593369	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	7q22.1	NR	rs143593369-G	0.008269	5E-141		0.295886	[0.27-0.32] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
1350	chr7	100309179	100309180	rs143593369	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	7q22.1		rs143593369-?	NR	1E-123				NR [~ 8900000] (imputed)	N
1350	chr7	100309179	100309180	rs143593369	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	7q22.1	POP7	rs143593369-G	0.0092	3E-38		0.287167	[0.24-0.33] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1350	chr7	100310611	100310612	rs73711148	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7q22.1	NR	rs73711148-C	0.01045	3E-9	(ECI1)	0.3743	NR unit increase	Illumina [1671387] (imputed)	N
1350	chr7	100312723	100312724	rs534043	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	7q22.1	NR	rs534043-G	0.8744	8E-10		0.0447	[0.03-0.059] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1350	chr7	100313098	100313099	rs492430	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	7q22.1		rs492430-G	NR	5E-17		0.0236	[0.018-0.029] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
1350	chr7	100313098	100313099	rs492430	34380480	Liu J	2021-08-12	BMC Med	Genome-wide association study followed by trans-ancestry meta-analysis identify 17 new risk loci for schizophrenia.	Schizophrenia	26,271 East Asian ancestry cases, 40,071 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	7q22.1		rs492430-T	NR	2E-8		1.07		Illumina [NR] (imputed)	N
1350	chr7	100313419	100313420	rs506597	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	7q22.1	NR	rs506597-G	0.8812	2E-10		0.041	[0.028-0.054] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1350	chr7	100313419	100313420	rs506597	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Pursuit maintenance gain in psychotic disorders	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases	NA	7q22.1	EPO	rs506597-?	NR	1E-7	(African)			Illumina [4404269] (imputed)	N
1350	chr7	100314473	100314474	rs149823406	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	7q22.1	EPO	rs149823406-T	0.00953000000000004	1E-46		0.17355734	[0.15-0.2] unit decrease	Affymetrix [93095623] (imputed)	N
1350	chr7	100314473	100314474	rs149823406	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	7q22.1	EPO	rs149823406-T	0.00952500000000001	3E-36		0.15252036	[0.13-0.18] unit decrease	Affymetrix [93095623] (imputed)	N
1350	chr7	100314473	100314474	rs149823406	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	7q22.1	EPO	rs149823406-T	0.00952799999999998	8E-44		0.16748874	[0.14-0.19] unit decrease	Affymetrix [93095623] (imputed)	N
1350	chr7	100314473	100314474	rs149823406	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	7q22.1	EPO	rs149823406-T	0.0103	1E-10		0.1232291	[0.086-0.161] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1350	chr7	100314473	100314474	rs149823406	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	7q22.1	EPO	rs149823406-T	0.0103	4E-12		0.1314232	[0.094-0.169] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1350	chr7	100315516	100315517	rs1734907	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	7q22.1	NR	rs1734907-A	NR	4E-6		1.07	[NR]	Illumina [7158791] (imputed)	N
1350	chr7	100315516	100315517	rs1734907	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	7q22.1	EPO	rs1734907-A	0.149	2E-13		1.114	[1.071-1.158]	Affymetrix, Illumina [1230000] (imputed)	N
1350	chr7	100316050	100316050	rs56215448	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	7q22.1	EPO	rs56215448-GGC	NR	3E-8		0.0215476	[0.014-0.029] unit decrease	Affymetrix [321114] (imputed)	N
1350	chr7	100316243	100316244	rs141813333	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	7q22.1	EPO	rs141813333-C	NR	8E-9		0.0427734	[0.028-0.057] unit decrease	Affymetrix [321114] (imputed)	N
1350	chr7	100316974	100316975	rs576236	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	7q22.1	EPO	rs576236-T	0.598353	8E-56		0.036354803	[0.032-0.041] unit decrease	Affymetrix [93095623] (imputed)	N
1350	chr7	100316974	100316975	rs576236	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	7q22.1	EPO	rs576236-T	0.57796875	2E-6	(EPO, 5813_58_3)	0.11779149	[0.069-0.166] unit increase	Illumina [> 1000000] (imputed)	N
1350	chr7	100317297	100317298	rs1617640	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	8,189 South Asian ancestry individuals	NA	7q22.1	NR	rs1617640-C	0.361399	4E-11		0.107171	[0.075-0.139] SD units increase	Affymetrix, Illumina [28493162] (imputed)	N
1350	chr7	100319632	100319633	rs62483572	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	7q22.1		rs62483572-A	NR	3E-8		0.0863	[0.056-0.117] unit decrease	Affymetrix, Illumina [20535842] (imputed)	N
1350	chr7	100319632	100319633	rs62483572	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Red blood cell count	445,305 European ancestry individuals	NA	7q22.1		rs62483572-?	NR	2E-76		0.258092	[0.23-0.29] unit decrease	NR [9800000] (imputed)	N
1350	chr7	100319632	100319633	rs62483572	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Hemoglobin levels	445,373 European ancestry individuals	NA	7q22.1		rs62483572-?	NR	2E-95		0.303283	[0.27-0.33] unit decrease	NR [9800000] (imputed)	N
1350	chr7	100319632	100319633	rs62483572	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Bilirubin levels	436,055 European ancestry individuals	NA	7q22.1		rs62483572-?	NR	3E-14		0.107795	[0.081-0.135] unit decrease	NR [9800000] (imputed)	N
1350	chr7	100319632	100319633	rs62483572	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	7q22.1	EPO	rs62483572-A	0.00532100000000002	3E-55		0.23748577	[0.21-0.27] unit decrease	Affymetrix [93095623] (imputed)	N
1350	chr7	100319632	100319633	rs62483572	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	7q22.1	EPO	rs62483572-A	0.00534699999999999	5E-9		0.09039672	[0.06-0.121] unit increase	Affymetrix [93095623] (imputed)	N
1350	chr7	100319632	100319633	rs62483572	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	7q22.1	EPO	rs62483572-A	0.00531400000000004	1E-78		0.28522038	[0.26-0.31] unit decrease	Affymetrix [93095623] (imputed)	N
1350	chr7	100319632	100319633	rs62483572	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	7q22.1	EPO	rs62483572-A	0.00531999999999999	1E-89		0.30471355	[0.27-0.33] unit decrease	Affymetrix [93095623] (imputed)	N
1350	chr7	100319632	100319633	rs62483572	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	7q22.1	EPO	rs62483572-A		2E-73		0.263	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
1350	chr7	100319632	100319633	rs62483572	24777453	Auer PL	2014-04-28	Nat Genet	Rare and low-frequency coding variants in CXCR2 and other genes are associated with hematological traits.	Hemoglobin levels	24,814 European ancestry individuals	6,526 European ancestry individuals	7q22.1	EPO	rs62483572-A	0.0045	3E-8		0.348	[0.22-0.47] unit decrease	Illumina [183585]	N
1350	chr7	100319632	100319633	rs62483572	24777453	Auer PL	2014-04-28	Nat Genet	Rare and low-frequency coding variants in CXCR2 and other genes are associated with hematological traits.	Hematocrit	24,814 European ancestry individuals	6,526 European ancestry individuals	7q22.1	EPO	rs62483572-A	0.0045	6E-9		1.079	[0.71-1.44] unit decrease	Illumina [183585]	N
1350	chr7	100319935	100319936	rs507392	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q22.1	NR	rs507392-A	0.649952	4E-398				Affymetrix, Illumina [24332387] (imputed)	N
1350	chr7	100321022	100321023	rs78182250	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	7q22.1	NR	rs78182250-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
1350	chr7	100321022	100321023	rs78182250	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	7q22.1		rs78182250-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1350	chr7	100321527	100321528	rs551238	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	142,940 East Asian ancestry individuals	NA	7q22.1	NR	rs551238-G	0.160443	1E-14		0.039435	[0.029-0.049] SD units increase	Affymetrix, Illumina [16289021] (imputed)	N
1350	chr7	100321527	100321528	rs551238	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	7q22.1	EPO	rs551238-T	0.5983	2E-92		0.07426665	[0.067-0.081] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1350	chr7	100321527	100321528	rs551238	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	7q22.1	EPO	rs551238-T	0.5984	4E-32		0.0427105	[0.036-0.05] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1350	chr7	100326743	100326744	rs4729607	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q22.1	NR	rs4729607-T	0.757769	9E-24				Affymetrix, Illumina [17210439] (imputed)	N
1350	chr7	100326743	100326744	rs4729607	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	7q22.1	NR	rs4729607-T	0.753816	8E-27		0.023791	[0.019-0.028] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
1350	chr7	100329614	100329614	rs111740978	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	7q22.1		rs111740978-TGACAGAGCGA	NR	2E-15		0.0277	[0.021-0.035] unit increase	Affymetrix, Illumina [20535873] (imputed)	N
1350	chr7	100330090	100330091	rs2406256	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q22.1	NR	rs2406256-C	0.832255	6E-12				Affymetrix, Illumina [23472807] (imputed)	N
1350	chr7	100330491	100330492	rs111338114	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	7q22.1	EPO	rs111338114-A	0.943992	5E-9		0.0288539	[0.019-0.039] unit increase	Affymetrix [NR] (imputed)	N
1350	chr7	100340877	100340878	rs142267802	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	7q22.1		rs142267802-?	NR	9E-19				NR [~ 8900000] (imputed)	N
1350	chr7	100344027	100344028	rs41280986	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	7q22.1	ZAN	rs41280986-T	NR	2E-8		0.0533096	[0.035-0.072] unit decrease	Affymetrix [321114] (imputed)	N
1350	chr7	100345105	100345106	rs2075671	19862010	Ganesh SK	2009-10-11	Nat Genet	Multiple loci influence erythrocyte phenotypes in the CHARGE Consortium.	Other erythrocyte phenotypes	24,167 European ancestry individuals	9,456 European ancestry individuals	7q22.1	EPO	rs2075671-A	NR	1E-9	(RBC)	0.0	[0.005-0.009] 1 M cell/mm^3 increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1350	chr7	100346052	100346053	rs79163323	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	7q22.1	ZAN	rs79163323-C	0.967301	4E-9		0.0297719	[0.02-0.04] unit decrease	NR [13737936] (imputed)	N
1350	chr7	100347058	100347059	rs62483591	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	7q22.1	ZAN	rs62483591-T	0.319249	9E-27		0.030582448	[0.025-0.036] unit increase	Affymetrix [93095623] (imputed)	N
1350	chr7	100347078	100347079	rs143058637	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	7q22.1	ZAN	rs143058637-T	0.083538	1E-16		0.035494447	[0.027-0.044] unit decrease	Affymetrix [93095623] (imputed)	N
1350	chr7	100359453	100359454	rs112108851	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	7q22.1	NR	rs112108851-T	0.2708	2E-9				NR [9056863] (imputed)	N
1350	chr7	100359796	100359797	rs75572930	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	7q22.1		rs75572930-?	NR	3E-6		0.946215	[0.92-0.97]	NR [685523]	N
1350	chr7	100360367	100360367	rs540403384	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	7q22.1		rs540403384-CT	NR	6E-13		0.0196	[0.014-0.025] unit decrease	Affymetrix, Illumina [20536134] (imputed)	N
1350	chr7	100361391	100361391	rs3215395	32358547	Persyn E	2020-05-01	Nat Commun	Genome-wide association study of MRI markers of cerebral small vessel disease in 42,310 participants.	White matter hyperintensities	39,011 European ancestry individuals, 2,099 African ancestry individuals, 795 Hispanic individuals, 3,299 Asian ancestry individuals	NA	7q22.1	ZAN	rs3215395-G		2E-8		5.597	[NR] Zscore increase	Affymetrix [9700000] (imputed)	N
1350	chr7	100364181	100364182	rs199510068	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Testosterone levels	310,461 European ancestry individuals, 5,453 African ancestry individuals, 6,680 South Asian ancestry individuals	NA	7q22.1	NR	rs199510068-G	NR	2E-10		0.1119	[0.078-0.146] unit decrease	Affymetrix [9000000] (imputed)	N
1350	chr7	100392181	100392182	rs79990258	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7q22.1		rs79990258-?	NR	4E-13				NR [~ 8900000] (imputed)	N
1351	chr7	100401824	100401825	rs314349	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	7q22.1	EPHB4	rs314349-?	NR	8E-12		1.056524	NR	Affymetrix [9154080] (imputed)	N
1351	chr7	100403130	100403131	rs35638378	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7q22.1	NR	rs35638378-A	0.0122	2E-8	(C5)	0.04677	NR unit increase	Illumina [1671387] (imputed)	N
1351	chr7	100412373	100412374	rs3847061	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	286 European ancestry cases, 2,652 European ancestry controls, 76 Han Chinese ancestry cases, 889 Han Chinese ancestry controls, 46 South Asian ancestry cases, 501 South Asian ancestry controls, 683 Turkish ancestry cases, 1,721 Turkish ancestry controls	NA	7q22.1	EPHB4	rs3847061-C	NR	9E-6		1.4064	NR	Illumina [up to 4495750] (imputed)	N
1351	chr7	100414146	100414147	rs116979562	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	7q22.1	EPHB4	rs116979562-A	0.037	3E-15		0.08569363	[0.064-0.107] unit increase	Affymetrix [~ 2500000] (imputed)	N
1351	chr7	100414146	100414147	rs116979562	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	7q22.1	EPHB4	rs116979562-A	0.0368	1E-23		0.1091491	[0.088-0.131] unit increase	Affymetrix [~ 2500000] (imputed)	N
1351	chr7	100416249	100416250	rs144173	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	7q22.1	EPHB4	rs144173-G	0.601321	4E-9		0.013505116	[0.009-0.018] unit decrease	Affymetrix [93095623] (imputed)	N
1351	chr7	100422480	100422481	rs314311	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	265,204 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7q22.1	NR	rs314311-T	NR	1E-8		0.023	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1351	chr7	100422480	100422481	rs314311	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	265,204 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7q22.1	NR	rs314311-T	NR	2E-6		0.019	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1351	chr7	100423364	100423365	rs314313	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	7q22.1	NR	rs314313-G	0.3043	4E-6	(EA)	1.0641211	[1.04-1.09]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1351	chr7	100423364	100423365	rs314313	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	7q22.1	NR	rs314313-G	0.3043	4E-10	(EA)	1.0688285	[1.05-1.09]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1351	chr7	100423364	100423365	rs314313	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	7q22.1	NR	rs314313-G	0.3043	3E-8	(EA)	1.0734991	[1.05-1.1]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1351	chr7	100428436	100428437	rs314316	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	7q22.1	NR	rs314316-G	NR	1E-12		0.0202	[0.015-0.026] unit increase	Affymetrix [9000000] (imputed)	N
1351	chr7	100428436	100428437	rs314316	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	7q22.1	NR	rs314316-G	NR	3E-17		0.0252	[0.019-0.031] unit increase	Affymetrix [9000000] (imputed)	N
1351	chr7	100428436	100428437	rs314316	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	7q22.1	NR	rs314316-G	NR	3E-9		0.0168	[0.011-0.022] unit increase	Affymetrix [9000000] (imputed)	N
1351	chr7	100428436	100428437	rs314316	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	7q22.1	NR	rs314316-G	NR	7E-11		0.0185	[0.013-0.024] unit increase	Affymetrix [9000000] (imputed)	N
1351	chr7	100432433	100432434	rs143228326	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	7q22.1		rs143228326-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1351	chr7	100446236	100446237	rs117450257	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	7q22.1	ZAN, EPHB4, SLC12A9, TRIP6, SRRT, UFSP1, ACHE	rs117450257-G	0.041000000000000036	7E-6		1.1336069		NR [9372253] (imputed)	N
1351	chr7	100451731	100451732	rs12535629	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	7q22.1		rs12535629-?	NR	7E-33				NR [~ 8900000] (imputed)	N
1351	chr7	100451731	100451732	rs12535629	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	7q22.1	SLC12A9	rs12535629-T	0.28	2E-15		1.07	NR	Affymetrix [9154080] (imputed)	N
1351	chr7	100453207	100453208	rs314370	20639392	Eijgelsheim M	2010-07-16	Hum Mol Genet	Genome-wide association analysis identifies multiple loci related to resting heart rate.	Resting heart rate	38,991 European ancestry individuals	NA	7q22.1	SLC12A9	rs314370-C	0.19	6E-10		7.6	[5.23-9.97] ms decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1351	chr7	100457577	100457578	rs80308281	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	7q22.1		rs80308281-C	0.0063185	4E-11		0.27983	[0.2-0.36] unit decrease	Affymetrix [15580782] (imputed)	N
1351	chr7	100457577	100457578	rs80308281	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Dark brown (UKB data field 1747_4)	171,614 European ancestry cases, 283,550 European ancestry controls	NA	7q22.1		rs80308281-C	0.00593	7E-28		0.34	[0.28-0.4] unit decrease	NR [11842647] (imputed)	N
1351	chr7	100457577	100457578	rs80308281	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Blonde (UKB data field 1747_1)	51,424 European ancestry cases, 403,740 European ancestry controls	NA	7q22.1		rs80308281-C	0.004853	4E-36		0.61	[0.51-0.71] unit increase	NR [11842647] (imputed)	N
1351	chr7	100457577	100457578	rs80308281	33692100	Simcoe M	2021-03-10	Sci Adv	Genome-wide association study in almost 195,000 individuals identifies 50 previously unidentified genetic loci for eye color.	Eye color	157,485 European ancestry individuals	35,501 European ancestry individuals, 959 Han Chinese ancestry individuals, 677 Indian ancestry individuals	7q22.1		rs80308281-T	0.997	5E-8	(EA)	5.45	NR z score increase	Illumina [11532091] (imputed)	N
1351	chr7	100457577	100457578	rs80308281	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	7q22.1	SLC12A9	rs80308281-C	0.005442	2E-34		1.696	NR	Affymetrix [9154080] (imputed)	N
1351	chr7	100458092	100458093	rs7801190	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Mean arterial pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	NA	7q22.1	SLC12A9	rs7801190-G	0.0691961830251175	2E-6		0.50576967	[0.3-0.71] unit decrease	Illumina [247039]	N
1351	chr7	100458092	100458093	rs7801190	21347282	Lettre G	2011-02-10	PLoS Genet	Genome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project.	Hypertension	4,069 African American cases, 3,848 African American controls	1,372 African American cases, 1,482 African American controls	7q22.1	SLC12A9	rs7801190-C	0.72	3E-8		1.31	[1.19-1.44]	Affymetrix [~ 2740000] (imputed)	N
1351	chr7	100466440	100466441	rs2075756	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	7q22.1	NR	rs2075756-A	NR	2E-10		0.0171	[0.012-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
1351	chr7	100471043	100471044	rs6706	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	7q22.1		rs6706-T	NR	2E-15		0.0234	[0.018-0.029] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
1351	chr7	100471043	100471044	rs6706	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	7q22.1	TRIP6	rs6706-T	0.18	1E-11		6.76	z-score increase	Affymetrix [4311822] (imputed)	N
1351	chr7	100471043	100471044	rs6706	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	7q22.1	NR	rs6706-T	0.18355100000000002	3E-29		0.0171595	[0.014-0.02] unit increase	Affymetrix [16585854] (imputed)	N
1351	chr7	100471043	100471044	rs6706	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	7q22.1	NR	rs6706-T	0.18355100000000002	3E-24		0.0183361	[0.015-0.022] unit increase	Affymetrix [16585866] (imputed)	N
1351	chr7	100474288	100474289	rs12667888	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	7q22.1	NR	rs12667888-C	0.182809	2E-59		0.0168174	[0.015-0.019] unit increase	Affymetrix [16582909] (imputed)	N
1351	chr7	100474288	100474289	rs12667888	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	7q22.1	NR	rs12667888-C	0.182809	6E-48		0.0172421	[0.015-0.02] unit increase	Affymetrix [16582965] (imputed)	N
1351	chr7	100477444	100477445	rs12705093	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	7q22.1	SRRT	rs12705093-A	0.911766	3E-15		0.00326942	[0.0024-0.0041] unit decrease	Affymetrix [13995440] (imputed)	N
1351	chr7	100482525	100482526	rs6942607	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	7q22.1	ACHE, SRRT	rs6942607-G		1E-9		0.013	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
1351	chr7	100482719	100482720	rs3757868	30679814	van Setten J	2019-01-24	Eur J Hum Genet	Genome-wide association meta-analysis of 30,000 samples identifies seven novel loci for quantitative ECG traits.	RR interval (heart rate)	2,006 Erasmus Rucphen Family (founder/genetic isolate) individuals, 26,692 European ancestry individuals	NA	7q22.1	SRRT	rs3757868-A	0.191	7E-11		8.956	[6.26-11.65] unit decrease	Affymetrix, Illumina [at least 19000000] (imputed)	N
1351	chr7	100482719	100482720	rs3757868	29769521	Ramirez J	2018-05-16	Nat Commun	Thirty loci identified for heart rate response to exercise and recovery implicate autonomic nervous system.	Heart rate response to recovery post exercise	up to 35,455 European ancestry females, up to 31,802 European ancestry males	NA	7q22.1	ACHE	rs3757868-G	0.815	7E-11		0.454	[0.32-0.59] bpm increase	Affymetrix [~ 7800000] (imputed)	N
1351	chr7	100482719	100482720	rs3757868	29497042	Verweij N	2018-03-01	Nat Commun	Genetic study links components of the autonomous nervous system to heart-rate profile during exercise.	Heart rate response to recovery post exercise (50 sec)	5,4137 European ancestry individuals, 1,744 Asian individuals, 1,445 African individuals, 468 admixed individuals, 1,024 individuals	NA	7q22.1	SRRT, ACHE, TRIP6, C7orf43, UFSP1	rs3757868-G	0.824148	4E-23		0.075208	[0.06-0.09] unit increase	Affymetrix [509255] (imputed)	N
1351	chr7	100482719	100482720	rs3757868	29497042	Verweij N	2018-03-01	Nat Commun	Genetic study links components of the autonomous nervous system to heart-rate profile during exercise.	Heart rate response to recovery post exercise (40 sec)	5,4137 European ancestry individuals, 1,744 Asian individuals, 1,445 African individuals, 468 admixed individuals, 1,024 individuals	NA	7q22.1	SRRT, ACHE, TRIP6, C7orf43, UFSP1	rs3757868-G	0.824148	6E-24		0.0767169	[0.062-0.092] unit increase	Affymetrix [509255] (imputed)	N
1351	chr7	100482719	100482720	rs3757868	29497042	Verweij N	2018-03-01	Nat Commun	Genetic study links components of the autonomous nervous system to heart-rate profile during exercise.	Heart rate response to recovery post exercise (30 sec)	5,4137 European ancestry individuals, 1,744 Asian individuals, 1,445 African individuals, 468 admixed individuals, 1,024 individuals	NA	7q22.1	SRRT, ACHE, TRIP6, C7orf43, UFSP1	rs3757868-G	0.824202	8E-23		0.0746972	[0.06-0.09] unit increase	Affymetrix [509255] (imputed)	N
1351	chr7	100482719	100482720	rs3757868	29497042	Verweij N	2018-03-01	Nat Commun	Genetic study links components of the autonomous nervous system to heart-rate profile during exercise.	Heart rate response to recovery post exercise (20 sec)	5,4137 European ancestry individuals, 1,744 Asian individuals, 1,445 African individuals, 468 admixed individuals, 1,024 individuals	NA	7q22.1	SRRT, ACHE, TRIP6, C7orf43, UFSP1	rs3757868-G	0.824132	3E-21		0.0720074	[0.057-0.087] unit increase	Affymetrix [509255] (imputed)	N
1351	chr7	100484168	100484169	rs17162528	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	7q22.1	NR	rs17162528-G	NR	1E-9		0.0377	[0.026-0.05] unit increase	Affymetrix [9000000] (imputed)	N
1351	chr7	100484380	100484381	rs12705095	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	7q22.1	NR	rs12705095-G	0.182122	3E-35		0.0175266	[0.015-0.02] unit increase	Affymetrix [16582621] (imputed)	N
1351	chr7	100484380	100484381	rs12705095	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	7q22.1	NR	rs12705095-G	0.182122	8E-30		0.0172606	[0.014-0.02] unit increase	Affymetrix [16582614] (imputed)	N
1351	chr7	100486753	100486754	rs12666989	20639392	Eijgelsheim M	2010-07-16	Hum Mol Genet	Genome-wide association analysis identifies multiple loci related to resting heart rate.	Resting heart rate	38,991 European ancestry individuals	NA	7q22.1	UFSP1	rs12666989-C	0.18	2E-8		7.0	[4.63-9.37] ms decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1351	chr7	100490076	100490077	rs7636	29782485	Rueger S	2018-05-21	PLoS Genet	Evaluation and application of summary statistic imputation to discover new height-associated loci.	Height	253,288 European ancestry individuals	336,474 European ancestry individuals	7q22.1	NR	rs7636-A	0.0380851626553821	5E-6				NR [9276018] (imputed)	N
1351	chr7	100490076	100490077	rs7636	21490949	Sim X	2011-04-07	PLoS Genet	Transferability of type 2 diabetes implicated loci in multi-ethnic cohorts from Southeast Asia.	Type 2 diabetes	2,010 Chinese ancestry cases, 1,945 Chinese ancestry controls, 794 Malay ancestry cases, 1,240 Malay ancestry controls, 977 Asian Indian ancestry cases, 1,169 Asian Indian ancestry controls	NA	7q22.1	ACHE	rs7636-A	0.06	5E-6	(Indian)	1.85	[1.42-2.41]	Illumina [~ 2000000] (imputed)	N
1351	chr7	100490796	100490797	rs1799805	29273807	Turcot V	2017-12-22	Nat Genet	Protein-altering variants associated with body mass index implicate pathways that control energy intake and expenditure in obesity.	Body mass index	up to 449,889 European ancestry individuals, up to 29,398 South Asian ancestry individuals, up to 27,610 African American individuals, up to 8,839 East Asian individuals, up to 10,772 Hispanic ancestry individuals	up to 196,766 European ancestry individuals	7q22.1	ACHE	rs1799805-T	0.039	3E-10		0.029	[0.019-0.039] unit increase	Illumina [246328]	N
1351	chr7	100493358	100493359	rs17881696	29769521	Ramirez J	2018-05-16	Nat Commun	Thirty loci identified for heart rate response to exercise and recovery implicate autonomic nervous system.	Resting heart rate	67,062 European ancestry individuals	NA	7q22.1	UFSP1	rs17881696-G	0.816422	7E-15		0.641347	[0.48-0.8] unit decrease	Affymetrix [~ 7800000] (imputed)	N
1351	chr7	100493358	100493359	rs17881696	27798624	Eppinga RN	2016-10-31	Nat Genet	Identification of genomic loci associated with resting heart rate and shared genetic predictors with all-cause mortality.	Resting heart rate	127,919 European ancestry individuals, 2,478 Asian ancestry individuals, 1,734 Black individuals, 684 Mixed ancestry individuals, 1,436 individuals	130,795 European ancestry individuals	7q22.1	UFSP1, SRRT, ACHE, EPHB4, GIGYF1, PCOLCE	rs17881696-A	0.18	1E-41		0.5784	[0.49-0.66] unit increase	Affymetrix [19941912] (imputed)	N
1351	chr7	100494948	100494949	rs17883557	29497042	Verweij N	2018-03-01	Nat Commun	Genetic study links components of the autonomous nervous system to heart-rate profile during exercise.	Heart rate response to recovery post exercise (10 sec)	5,4137 European ancestry individuals, 1,744 Asian individuals, 1,445 African individuals, 468 admixed individuals, 1,024 individuals	NA	7q22.1	SRRT, ACHE, TRIP6, C7orf43	rs17883557-G	0.822785	6E-21		0.0706643	[0.056-0.086] unit increase	Affymetrix [509255] (imputed)	N
1351	chr7	100494959	100494960	rs76181418	29497042	Verweij N	2018-03-01	Nat Commun	Genetic study links components of the autonomous nervous system to heart-rate profile during exercise.	Heart rate increase in response to exercise	5,4137 European ancestry individuals, 1,744 Asian ancestry individuals, 1,445 African ancestry individuals, 468 admixed individuals, 1,024 individuals	NA	7q22.1	SRRT, ACHE, TRIP6, C7orf43, UFSP1	rs76181418-G	0.822734	3E-16		0.0615519	[0.047-0.076] unit increase	Affymetrix [509255] (imputed)	N
1351	chr7	100496639	100496639	rs138475089	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Diastolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	7q22.1	ACHE	rs138475089-AAT	0.6472	1E-10		0.2078	[0.14-0.27] mmHg decrease	Affymetrix [NR] (imputed)	N
1351	chr7	100497130	100497131	rs13245899	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q22.1	UFSP1, ACHE	rs13245899-A	0.810127	9E-9	(-454 ms)	0.0410253	[0.027-0.055] unit decrease	Affymetrix [10000000] (imputed)	N
1351	chr7	100497130	100497131	rs13245899	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q22.1	UFSP1, ACHE	rs13245899-A	0.810127	8E-10	(-468 ms)	0.0438635	[0.03-0.058] unit decrease	Affymetrix [10000000] (imputed)	N
1351	chr7	100497130	100497131	rs13245899	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q22.1	UFSP1, ACHE	rs13245899-A	0.810127	8E-10	(-466 ms)	0.0438091	[0.03-0.058] unit decrease	Affymetrix [10000000] (imputed)	N
1351	chr7	100497130	100497131	rs13245899	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q22.1	UFSP1, ACHE	rs13245899-A	0.810127	6E-9	(-484 ms)	0.0414571	[0.027-0.055] unit decrease	Affymetrix [10000000] (imputed)	N
1351	chr7	100497130	100497131	rs13245899	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q22.1	UFSP1, ACHE	rs13245899-A	0.810127	3E-9	(-474 ms)	0.0422717	[0.028-0.056] unit decrease	Affymetrix [10000000] (imputed)	N
1351	chr7	100497130	100497131	rs13245899	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q22.1	UFSP1, ACHE	rs13245899-A	0.810127	3E-9	(-472 ms)	0.0423229	[0.028-0.056] unit decrease	Affymetrix [10000000] (imputed)	N
1351	chr7	100497130	100497131	rs13245899	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q22.1	UFSP1, ACHE	rs13245899-A	0.810127	3E-8	(-452 ms)	0.0394277	[0.025-0.053] unit decrease	Affymetrix [10000000] (imputed)	N
1351	chr7	100497130	100497131	rs13245899	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q22.1	UFSP1, ACHE	rs13245899-A	0.810127	3E-8	(-450 ms)	0.0393864	[0.025-0.053] unit decrease	Affymetrix [10000000] (imputed)	N
1351	chr7	100497130	100497131	rs13245899	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q22.1	UFSP1, ACHE	rs13245899-A	0.810127	3E-8	(-442 ms)	0.0396979	[0.026-0.054] unit decrease	Affymetrix [10000000] (imputed)	N
1351	chr7	100497130	100497131	rs13245899	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q22.1	UFSP1, ACHE	rs13245899-A	0.810127	2E-9	(-476 ms)	0.0428749	[0.029-0.057] unit decrease	Affymetrix [10000000] (imputed)	N
1351	chr7	100497130	100497131	rs13245899	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q22.1	UFSP1, ACHE	rs13245899-A	0.810127	2E-8	(-486 ms)	0.0397953	[0.026-0.054] unit decrease	Affymetrix [10000000] (imputed)	N
1351	chr7	100497130	100497131	rs13245899	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q22.1	UFSP1, ACHE	rs13245899-A	0.810127	2E-8	(-448 ms)	0.03977	[0.026-0.054] unit decrease	Affymetrix [10000000] (imputed)	N
1351	chr7	100497130	100497131	rs13245899	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q22.1	UFSP1, ACHE	rs13245899-A	0.810127	1E-9	(-470 ms)	0.0435707	[0.03-0.058] unit decrease	Affymetrix [10000000] (imputed)	N
1351	chr7	100497130	100497131	rs13245899	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q22.1	UFSP1, ACHE	rs13245899-A	0.810127	1E-9	(-458 ms)	0.0431612	[0.029-0.057] unit decrease	Affymetrix [10000000] (imputed)	N
1351	chr7	100497130	100497131	rs13245899	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q22.1	UFSP1, ACHE	rs13245899-A	0.810127	1E-9	(-456 ms)	0.0431822	[0.029-0.057] unit decrease	Affymetrix [10000000] (imputed)	N
1351	chr7	100497130	100497131	rs13245899	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q22.1	UFSP1, ACHE	rs13245899-A	0.810127	1E-8	(-478 ms)	0.0407686	[0.027-0.055] unit decrease	Affymetrix [10000000] (imputed)	N
1351	chr7	100497130	100497131	rs13245899	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q22.1	UFSP1, ACHE	rs13245899-A	0.810127	1E-8	(-460 ms)	0.040716	[0.027-0.055] unit decrease	Affymetrix [10000000] (imputed)	N
1351	chr7	100497130	100497131	rs13245899	23583979	den Hoed M	2013-04-14	Nat Genet	Identification of heart rate-associated loci and their effects on cardiac conduction and rhythm disorders.	Heart rate	85,787 European ancestry individuals, 6,568 Indian Asian ancestry indiviudals	88,823 European ancestry individuals	7q22.1	ACHE	rs13245899-G	0.195	8E-27		0.447	[0.34-0.55] unit increase	Affymetrix, Illumina [2516789] (imputed)	N
1351	chr7	100498474	100498475	rs3847063	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	7q22.1	ACHE	rs3847063-A	0.524169	3E-12		0.0127804	[0.0092-0.0164] unit increase	NR [13737936] (imputed)	N
1351	chr7	100501193	100501194	rs538605220	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	7q22.1		rs538605220-?	NR	5E-16				NR [~ 8900000] (imputed)	N
1351	chr7	100506380	100506381	rs13226502	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	7q22.1		rs13226502-T	NR	6E-13		0.0219	[0.016-0.028] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1351	chr7	100509162	100509163	rs4727469	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ACHE	5,363 Icelandic ancestry individuals	NA	7q22.1		rs4727469-T	0.4731	3E-60		0.299049	[0.26-0.33] unit increase	Illumina [7506463] (imputed)	N
1351	chr7	100509162	100509163	rs4727469	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	7q22.1	NR	rs4727469-C	0.52375	8E-37	(ACHE, 10980_11_3)	0.29719985	[0.25-0.34] unit decrease	Illumina [> 1000000] (imputed)	N
1351	chr7	100509162	100509163	rs4727469	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	7q22.1	NR	rs4727469-C	0.52375	6E-32	(PILRA, 6402_8_3)	0.29132938	[0.24-0.34] unit decrease	Illumina [> 1000000] (imputed)	N
1351	chr7	100509162	100509163	rs4727469	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	7q22.1	NR	rs4727469-C	0.52375	1E-32	(PILRA, 10816_150_3)	0.29262957	[0.24-0.34] unit decrease	Illumina [> 1000000] (imputed)	N
1351	chr7	100509252	100509253	rs13244629	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7q22.1		rs13244629-?	NR	1E-16				NR [~ 8900000] (imputed)	N
1351	chr7	100510235	100510236	rs111276691	34642315	Ferreiro-Iglesias A	2021-10-12	Nat Commun	Germline determinants of humoral immune response to HPV-16 protect against oropharyngeal cancer.	Human papilloma virus 16 negative oropharyngeal cancer	565 European ancestry cases, 5,256 European ancestry controls	NA	7q22.1		rs111276691-T	NR	5E-6		2.29		Illumina [7574753] (imputed)	N
1351	chr7	100510437	100510437	rs576872277	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	7q22.1		rs576872277-?	NR	8E-13		0.0155358	[0.011-0.02] unit increase	Affymetrix [20259828] (imputed)	N
1351	chr7	100512118	100512119	rs6976053	22990020	Huang J	2012-09-18	Blood	Genome-wide association study for circulating levels of PAI-1 provides novel insights into its regulation.	Plasminogen activator inhibitor type 1 levels (PAI-1)	19,599 European ancestry individuals	10,764 European ancestry individuals	7q22.1	UFSP1, SLC12A9, TRIP6, SRRT, EPHB4, ACHE, MUC3	rs6976053-?	NR	6E-13		0.048	[NR] unit increase	Affymetrix, Illumina [2445683] (imputed)	N
1351	chr7	100517686	100517687	rs9691107	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	7q22.1		rs9691107-?	NR	5E-13				NR [~ 8900000] (imputed)	N
1351	chr7	100525558	100525559	rs34489224	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	7q22.1	ACHE, MUC12	rs34489224-C		4E-10		0.185	unit increase	Affymetrix [at least 2696785] (imputed)	N
1352	chr7	100532539	100532540	rs10231941	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	7q22.1	MUC3A	rs10231941-T	0.822279	3E-13		0.0198963	[0.015-0.025] unit decrease	Affymetrix [NR] (imputed)	N
1352	chr7	100536053	100536054	rs62483665	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ACHE	5,363 Icelandic ancestry individuals	NA	7q22.1		rs62483665-T	0.1888	7E-33		0.28366	[0.24-0.33] unit increase	Illumina [7506463] (imputed)	N
1352	chr7	100540555	100540556	rs62483669	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	7q22.1	NR	rs62483669-G	NR	5E-9		0.0236	[0.016-0.031] unit increase	Affymetrix [9000000] (imputed)	N
1352	chr7	100540555	100540556	rs62483669	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	7q22.1	NR	rs62483669-G	NR	4E-10		0.0266	[0.018-0.035] unit increase	Affymetrix [9000000] (imputed)	N
1352	chr7	100546457	100546458	rs4582488	34753499	Hanscombe KB	2021-11-09	Genome Med	The genetic case for cardiorespiratory fitness as a clinical vital sign and the routine prescription of physical activity in healthcare.	Cardiorespiratory fitness slope	70,783 European ancestry individuals	NA	7q22.1		rs4582488-G	0.74	4E-9		0.007	[0.005-0.009] unit increase	Affymetrix [8918919] (imputed)	N
1352	chr7	100632789	100632790	rs4556017	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Escherichia flexneri abundance in stool	5,959 Finnish ancestry individuals	NA	7q22.1		rs4556017-C	0.178173	7E-9		0.112975	[0.075-0.151] unit decrease	Illumina [7980478] (imputed)	N
1352	chr7	100632789	100632790	rs4556017	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Escherichia abundance in stool	5,959 Finnish ancestry individuals	NA	7q22.1		rs4556017-C	0.178173	4E-10		0.171023	[0.12-0.22] unit decrease	Illumina [7980478] (imputed)	N
1352	chr7	100632789	100632790	rs4556017	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Enterobacteriaceae abundance in stool	5,959 Finnish ancestry individuals	NA	7q22.1		rs4556017-C	0.178173	2E-8		0.0963984	[0.063-0.13] unit decrease	Illumina [7980478] (imputed)	N
1352	chr7	100632789	100632790	rs4556017	34957435	Bonfiglio F	2021-12-08	Cell Genom	GWAS of stool frequency provides insights into gastrointestinal motility and irritable bowel syndrome.	Stool frequency	167,875 European ancestry individuals	NA	7q22.1		rs4556017-T	0.853	1E-9		0.024	[0.016-0.032] unit increase	Affymetrix, Illumina [8817117] (imputed)	N
1352	chr7	100632789	100632790	rs4556017	33888516	Zheng T	2021-04-22	Gut	Genome-wide analysis of 944 133 individuals provides insights into the etiology of haemorrhoidal disease.	Haemorrhoidal disease	218,920 European ancestry cases, 725,213 European ancestry controls	NA	7q22.1	MUC12	rs4556017-T	0.14439999999999997	1E-22		1.06	[1.05-1.07]	Affymetrix, Illumina [8494288] (imputed)	N
1352	chr7	100634886	100634887	rs117387753	34838041	Naderi E	2021-11-27	J Transl Med	A two-stage genome-wide association study of radiation-induced acute toxicity in head and neck cancer.	radiation-induced toxicity (standardized total average toxicity_patient)	881 Dutch ancestry individuals	241 Dutch ancestry individuals	7q22.1		rs117387753-A	NR	3E-6		0.6146365	[0.36-0.87] decrease	Illumina [6334277] (imputed)	N
1352	chr7	100634886	100634887	rs117387753	34838041	Naderi E	2021-11-27	J Transl Med	A two-stage genome-wide association study of radiation-induced acute toxicity in head and neck cancer.	radiation-induced toxicity (physician-rated acute xerostomia)	869 Dutch ancestry individuals	246 Dutch ancestry individuals	7q22.1		rs117387753-A	NR	3E-7		0.326648	[0.2-0.45] decrease	Illumina [6334277] (imputed)	N
1352	chr7	100644503	100644504	rs60826346	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	7q22.1	MUC12	rs60826346-C		1E-19		0.034	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
1352	chr7	100647510	100647511	rs78837976	34064523	Rodrigo LM	2021-05-04	Genes (Basel)	Imputation and Reanalysis of ExomeChip Data Identifies Novel, Conditional and Joint Genetic Effects on Parkinson's Disease Risk.	Parkinson's disease	5,167 European ancestry cases, 5,366 European ancestry controls	NA		MUC12	rs78837976-C	0.989	3E-18		16.6736	[9.0911-33.3347}	Illumina [1465938] (imputed)	N
1352	chr7	100663238	100663239	rs28690798	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	7q22.1		rs28690798-T	0.021447	6E-6		0.10463	[0.059-0.15] unit decrease	Affymetrix [15580782] (imputed)	N
1352	chr7	100663238	100663239	rs28690798	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation-estimated plasminogen activator inhibitor-1 levels	34,448 European ancestry individuals, 6,149 African American individuals	NA	7q22.1	NR	rs28690798-?	NR	6E-10				Affymetrix, Illumina [6211016] (imputed)	N
1353	chr7	100678609	100678610	rs78010183	30226566	Yamada Y	2018-09-04	Int J Mol Med	Identification of 13 novel susceptibility loci for early-onset myocardial infarction, hypertension, or chronic kidney disease.	Chronic kidney disease	1,051 Japanese ancestry cases, 1,505 Japanese ancestry controls	NA	7q22.1	MUC17	rs78010183-A	0.982	2E-8		3.448276		Illumina [31514]	N
1353	chr7	100698647	100698648	rs55710224	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	7q22.1	MUC17	rs55710224-G	0.501469	6E-10		0.01218	[0.0083-0.016] unit decrease	Affymetrix [NR] (imputed)	N
1353	chr7	100709132	100709133	rs7797559	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	7q22.1		rs7797559-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1353	chr7	100746657	100746658	rs10953322	30636644	Nazarian A	2019-01-12	Alzheimers Res Ther	Genome-wide analysis of genetic predisposition to Alzheimer's disease and related sex disparities.	Alzheimer's disease	952 European ancestry male cases, 1,789 European ancestry female cases, 6,337 European ancestry male controls, 8,402 European ancestry female controls	NA	7q22.1	TRIM56	rs10953322-?	NR	5E-6		1.3187115		Affymetrix, Illumina [2928658] (imputed)	N
1353	chr7	100754974	100754975	rs7790961	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	7q22.1		rs7790961-?	NR	3E-12				NR [~ 8900000] (imputed)	N
1353	chr7	100757058	100757059	rs4729660	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	7q22.1	SERPINE1	rs4729660-C	0.37265625	1E-6	(SERPINE1, 2925_9_1)	0.12603663	[0.075-0.177] unit decrease	Illumina [> 1000000] (imputed)	N
1353	chr7	100769537	100769538	rs2227631	22990020	Huang J	2012-09-18	Blood	Genome-wide association study for circulating levels of PAI-1 provides novel insights into its regulation.	Plasminogen activator inhibitor type 1 levels (PAI-1)	19,599 European ancestry individuals	10,764 European ancestry individuals	7q22.1	SERPINE1	rs2227631-?	NR	3E-24		0.073	[NR] unit increase	Affymetrix, Illumina [2445683] (imputed)	N
1353	chr7	100772844	100772845	rs3020623	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	7q22.1		rs3020623-?	NR	1E-18				NR [~ 8900000] (imputed)	N
1353	chr7	100772844	100772845	rs3020623	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7q22.1		rs3020623-?	NR	2E-14				NR [~ 8900000] (imputed)	N
1353	chr7	100774748	100774749	rs2227667	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SERPINE1	5,354 Icelandic ancestry individuals	NA	7q22.1		rs2227667-G	0.1734	4E-12		0.167618	[0.12-0.22] unit decrease	Illumina [7506463] (imputed)	N
1353	chr7	100774748	100774749	rs2227667	24578379	Huang J	2014-02-27	Arterioscler Thromb Vasc Biol	Genome-wide association study for circulating tissue plasminogen activator levels and functional follow-up implicates endothelial STXBP5 and STX2.	Plasma plasminogen activator levels	26,217 European ancestry individuals, 712 Orcadian individuals	4,487 European ancestry individuals	7q22.1	SERPINE1	rs2227667-A	0.804	3E-6		0.027	[0.015-0.039] unit increase	Affymetrix, Illumina [2455857] (imputed)	N
1353	chr7	100792861	100792862	rs13226049	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	7q22.1	NR	rs13226049-A	0.542	8E-10		0.00673551	[0.0046-0.0089] unit decrease	NR [9732723] (imputed)	N
1354	chr7	100800634	100800635	rs2074686	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	7q22.1		rs2074686-A	NR	1E-8		0.011	[0.0073-0.0147] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1354	chr7	100800634	100800635	rs2074686	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	7q22.1		rs2074686-G	0.415	3E-9		0.007	[0.005-0.009] unit increase	NR [NR] (imputed)	N
1354	chr7	100800634	100800635	rs2074686	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		7q22.1	AP1S1	rs2074686-G	0.410365	3E-9		0.00827977	[0.0055-0.011] unit increase	Affymetrix [12370749]	N
1354	chr7	100803613	100803614	rs2074683	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	7q22.1	NR	rs2074683-?	NR	4E-9				Affymetrix [~ 8270000] (imputed)	N
1354	chr7	100803613	100803614	rs2074683	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	7q22.1		rs2074683-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1354	chr7	100804139	100804140	rs1048303	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	7q22.1	NA	rs1048303-T	0.5817	1E-10		0.011	[0.0077-0.0143] unit decrease	NR [~ 27400000] (imputed)	N
1354	chr7	100805459	100805460	rs10755866	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	7q22.1	NR	rs10755866-A	NR	8E-12		0.0199	[0.014-0.026] unit increase	Affymetrix [9000000] (imputed)	N
1354	chr7	100809457	100809458	rs75741381	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	7q22.1		rs75741381-?	NR	1E-8		0.0162666	[0.011-0.022] unit decrease	NR [6912294] (imputed)	N
1354	chr7	100809457	100809458	rs75741381	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	417,580 European ancestry individuals	NA	7q22.1		rs75741381-C	0.852362	1E-7		0.015	[0.0091-0.0209] unit decrease	NR [7250403] (imputed)	N
1354	chr7	100814759	100814760	rs75082775	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	7q22.1	NAT16	rs75082775-C	0.0439712	9E-14	(N-acetylhistidine)	0.409	[0.3-0.52] unit increase	Illumina [13039987] (imputed)	N
1354	chr7	100815815	100815816	rs12540617	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	7q22.1	NAT16	rs12540617-C	0.799003	1E-16	(N-acetylhistidine)	0.246	[0.19-0.3] unit decrease	Illumina [13039987] (imputed)	N
1354	chr7	100816346	100816347	rs740104	33437055	Panyard DJ	2021-01-12	Commun Biol	Cerebrospinal fluid metabolomics identifies 19 brain-related phenotype associations.	N-acetylhistidine levels	291 European ancestry individuals	NA	7q22.1		rs740104-C	0.929	7E-36		0.3584	unit increase	Illumina [7049691] (imputed)	N
1354	chr7	100817900	100817901	rs34985488	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	7q22.1	NAT16	rs34985488-A	0.867295	3E-57	(N-acetylhistidine)	0.511	[0.45-0.57] unit increase	Illumina [13039987] (imputed)	N
1354	chr7	100827293	100827294	rs12670422	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota (alpha diversity)	858 Metropolitan French ancestry individuals	NA	7q22.1	NR	rs12670422-?	NR	7E-6	(Simpson's diversity index)	482608.0	[272793.92-692422.08] unit decrease	Illumina [5293637] (imputed)	N
1354	chr7	100835884	100835885	rs7780766	33838163	Luo S	2021-04-07	Kidney Int	Genome-wide association study of serum metabolites in the African American Study of Kidney Disease and Hypertension.	Serum metabolite concentrations in chronic kidney disease	619 African American individuals	NA	7q22.1	MOGAT3, AP1S1	rs7780766-?	NR	6E-15	(N-acetylhistidine)	0.5	[NR] unit decrease	Illumina [14760605] (imputed)	N
1354	chr7	100855214	100855215	rs41281013	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PLOD3	5,350 Icelandic ancestry individuals	NA	7q22.1		rs41281013-G	0.01635	2E-12		0.513945	[0.37-0.66] unit decrease	Illumina [7506463] (imputed)	N
1354	chr7	100858603	100858604	rs118189570	34020725	Reddy JS	2021-05-21	Acta Neuropathol Commun	Genome-wide analysis identifies a novel LINC-PINT splice variant associated with vascular amyloid pathology in Alzheimer's disease.	Cerebral amyloid angiopathy in Alzheimer's disease	821 European ancestry individuals	NA		PLOD3	rs118189570-C	0.02	6E-6		0.32	[0.18-0.47] unit increase	Illumina [1679420] (imputed)	N
1354	chr7	100862391	100862392	rs35094522	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	7q22.1		rs35094522-?	NR	9E-16				NR [~ 8900000] (imputed)	N
1354	chr7	100862767	100862768	rs10215699	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	7q22.1	PLOD3	rs10215699-C	0.9375	7E-6	(PLOD3, 10612_18_3)	0.22775082	[0.13-0.33] unit increase	Illumina [> 1000000] (imputed)	N
1354	chr7	100881402	100881403	rs3757458	23166209	Smith JG	2012-11-19	Circ Cardiovasc Genet	Impact of ancestry and common genetic variants on QT interval in African Americans.	QT interval	13,105 African American individuals	NA	7q22.1	NR	rs3757458-A	0.01	2E-6		8.0	[4.77-11.23] unit decrease	Affymetrix, Illumina [2800000] (imputed)	N
1354	chr7	100895479	100895480	rs6942609	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q22.1	NR	rs6942609-A	0.230988	7E-10				Affymetrix, Illumina [23472807] (imputed)	N
1354	chr7	100895479	100895480	rs6942609	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	7q22.1	NR	rs6942609-A	0.200949	4E-12		0.016393	[0.012-0.021] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1354	chr7	100898955	100898955	rs563082566	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	7q22.1		rs563082566-AAC	0.0077441	6E-8		0.20788	[0.13-0.28] unit decrease	Affymetrix [15580782] (imputed)	N
1355	chr7	100932583	100932584	rs7795865	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7q22.1		rs7795865-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1355	chr7	100943060	100943061	rs10275421	30891314	Saad MN	2019-01-18	J Adv Res	Studying the effects of haplotype partitioning methods on the RA-associated genomic results from the North American Rheumatoid Arthritis Consortium (NARAC) dataset.	Rheumatoid arthritis	868 European ancestry cases, 1,194 European ancestry controls	NA	7q22.1	FIS1, RABL5	rs10275421-G	0.96	8E-9				NR [509413]	N
1355	chr7	100997743	100997744	rs12665915	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	7q22.1		rs12665915-G	0.5	7E-31		11.56	z score increase	Affymetrix [9061022] (imputed)	N
1355	chr7	100997743	100997744	rs12665915	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	7q22.1		rs12665915-G	0.5	4E-14		7.56	z score increase	Affymetrix [9061022] (imputed)	N
1355	chr7	100997743	100997744	rs12665915	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	7q22.1		rs12665915-G	0.5	1E-18		8.83	z score increase	Affymetrix [9061022] (imputed)	N
1355	chr7	100997743	100997744	rs12665915	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	7q22.1	NR	rs12665915-G	0.4403	9E-13				NR [9056863] (imputed)	N
1355	chr7	100997743	100997744	rs12665915	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	7q22.1	NR	rs12665915-G	0.4403	1E-17				NR [9056863] (imputed)	N
1355	chr7	101007776	101007777	rs4729693	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs4729693-C	0.502486	1E-9		0.0497921	[0.032-0.068] increase	Affymetrix [11014269] (imputed)	N
1355	chr7	101044029	101044030	rs11772848	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	7q22.1	COL26A1	rs11772848-G	0.7645	1E-8		0.0926	[0.06-0.125] unit increase	Affymetrix [~ 11900000] (imputed)	N
1356	chr7	101057492	101057493	rs62465642	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	7q22.1	NR	rs62465642-?		4E-9				NR [7428630] (imputed)	N
1356	chr7	101057492	101057493	rs62465642	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	7q22.1	COL26A1	rs62465642-A	0.7645	3E-8		0.0908	[0.058-0.123] unit increase	Affymetrix [~ 11900000] (imputed)	N
1356	chr7	101069143	101069144	rs58441332	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	7q22.1	COL26A1	rs58441332-G		1E-10		0.03	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
1356	chr7	101081273	101081274	rs534693155	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Lysophosphatidylcholine levels	2,045 European ancestry individuals	NA	7q22.1	COL26A1	rs534693155-G	NR	4E-8	(LPC(16:1;0))	1.2381	[0.8-1.68] unit increase	Illumina [~ 9300000] (imputed)	N
1356	chr7	101083734	101083735	rs9649226	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical thickness (MOSTest)	26,502 European ancestry individuals	NA	7q22.1	NR	rs9649226-?		4E-8				NR [7428630] (imputed)	N
1356	chr7	101085521	101085521	rs5886178	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip	15 Asian ancestry cases, 13 European ancestry cases, 15 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	7q22.1	NR	rs5886178-?	NR	3E-6		3.48	[2.73-4.42]	Illumina [539000] (imputed)	N
1356	chr7	101115993	101115994	rs17135437	22760553	Adkins DE	2012-07-03	Transl Psychiatry	Genome-wide pharmacogenomic study of citalopram-induced side effects in STAR*D.	Response to citalopram treatment	1,392 European ancestry depression cases, 264 African American depression cases, 106 depression cases	NA	7q22.1	EMID2	rs17135437-A	NR	3E-6	(AA - Visionhearing)			Affymetrix [421789]	N
1356	chr7	101115993	101115994	rs17135437	22760553	Adkins DE	2012-07-03	Transl Psychiatry	Genome-wide pharmacogenomic study of citalopram-induced side effects in STAR*D.	Response to citalopram treatment	1,392 European ancestry depression cases, 264 African American depression cases, 106 depression cases	NA	7q22.1	EMID2	rs17135437-A	0.019	3E-8	(EA + AA - Visionhearing)			Affymetrix [421789]	N
1356	chr7	101129764	101129765	rs73712171	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	7q22.1	NR	rs73712171-?	NR	7E-6				Affymetrix [5486770] (imputed)	N
1356	chr7	101143523	101143524	rs200224959	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental extreme longevity (95 years and older)	1,339 middle-aged British cases, 40,934 middle-aged British controls	NA	7q22.1	NR	rs200224959-?	NR	5E-6		0.01516	[0.0087-0.0217] unit decrease	Affymetrix [9658292] (imputed)	N
1356	chr7	101172235	101172236	rs145252195	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (Multivariate)	1,390 European ancestry individuals	NA	7q22.1		rs145252195-?	NR	8E-6	(MLM)			Illumina [~ 9000000] (imputed)	N
1357	chr7	101201313	101201314	rs10264081	30694715	Sakornsakolpat P	2019-01-29	Am J Respir Cell Mol Biol	Genome-Wide Association Analysis of Single Breath Diffusing Capacity of Carbon Monoxide (DLCO).	Diffusing capacity of carbon monoxide	2,584 European ancestry individuals with chronic obstructive pulmonary disease, 3,002 European ancestry healthy individuals, 343 African American individuals with chronic obstructive pulmonary disease, 1,006 African American healthy individuals	NA	7q22.1	COL26A1	rs10264081-T	0.21	1E-6	(African American)	0.23	0.14-0.32 unit decrease	Illumina [NR] (imputed)	N
1357	chr7	101208272	101208273	rs73413466	32766472	Park SL	2020-06-25	Hepatol Commun	Genome-Wide Association Study of Liver Fat: The Multiethnic Cohort Adiposity Phenotype Study.	Percent liver fat	269 African American individuals, 424 Japanese American individuals, 345 Latino individuals, 270 Native Hawaiian individuals, 382 European ancestry individuals	NA	7q22.1	NR	rs73413466-?	NR	2E-7		0.1019286	[0.064-0.14] unit increase	Illumina [9789995] (imputed)	N
1357	chr7	101231081	101231082	rs56240036	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	7q22.1		rs56240036-T	NR	3E-28		0.0245	[0.02-0.029] unit decrease	Affymetrix, Illumina [20538307] (imputed)	N
1357	chr7	101231081	101231082	rs56240036	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	7q22.1	NR	rs56240036-T	NR	1E-9		0.0154	[0.011-0.02] unit decrease	Affymetrix [9000000] (imputed)	N
1357	chr7	101231631	101231632	rs55995100	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	7q22.1		rs55995100-A	0.329997	2E-10		0.01504485	[0.01-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1357	chr7	101231631	101231632	rs55995100	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	7q22.1		rs55995100-A	0.329963	2E-9		0.0140725225	[0.0095-0.0187] unit decrease	Affymetrix [93095623] (imputed)	N
1357	chr7	101231631	101231632	rs55995100	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	7q22.1		rs55995100-?	NR	4E-15				NR [~ 8900000] (imputed)	N
1357	chr7	101237752	101237753	rs55914958	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	7q22.1	MYL10	rs55914958-T	0.2932	4E-16		0.0064	[0.0048-0.008] unit decrease	Affymetrix, Illumina [8176554] (imputed)	N
1357	chr7	101245309	101245310	rs11983846	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7q22.1	NR	rs11983846-A	0.0122	5E-11	(ACSL4)	0.1232	NR unit increase	Illumina [1671387] (imputed)	N
1357	chr7	101257074	101257075	rs2240390	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	7q22.1		rs2240390-C	NR	7E-12		0.0132	[0.0095-0.0169] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
1357	chr7	101263325	101263326	rs183832949	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	7q22.1	MYL10	rs183832949-A	0.999	4E-6	(AA)	0.49	unit increase	Illumina [NR] (imputed)	N
1357	chr7	101263921	101263922	rs4602817	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	7q22.1	NR	rs4602817-G	NR	2E-9		0.0173	[0.012-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
1357	chr7	101286176	101286177	rs1722229	24528284	Ji Y	2014-08-01	Br J Clin Pharmacol	Citalopram and escitalopram plasma drug and metabolite concentrations: genome-wide associations.	Response to serotonin reuptake inhibitors in major depressive disorder (plasma drug and metabolite levels)	300 European ancestry Escitalpram treated individuals, 130 European ancestry Citalopram treated individuals	NA	7q22.1	MYL10	rs1722229-?	0.034	1E-6	(S-CT concentration, adjusted for CYP2C19)			Illumina [7537437] (imputed)	N
1358	chr7	101355322	101355323	rs116967872	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7q22.1		rs116967872-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1358	chr7	101372069	101372070	rs73177866	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	7q22.1		rs73177866-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1358	chr7	101373771	101373772	rs60457263	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	7q22.1		rs60457263-T	0.34291	2E-11		0.015616016	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1358	chr7	101382862	101382863	rs77155650	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	7q22.1		rs77155650-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1358	chr7	101393722	101393723	rs78227582	33549134	Adolphe C	2021-02-06	Genome Med	Genetic and functional interaction network analysis reveals global enrichment of regulatory T cell genes influencing basal cell carcinoma susceptibility.	Basal cell carcinoma	17,416 European ancestry cases, 375,455 European ancestry controls	NA	7q22.1	CUX1	rs78227582-T	0.247444	5E-17		0.109215066	[0.084-0.135] unit decrease	Affymetrix [7260263] (imputed)	N
1358	chr7	101405819	101405820	rs139978687	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	7q22.1	NR	rs139978687-T	0.249751	6E-20		0.0324476	[0.025-0.039] unit increase	NR [19129689] (imputed)	N
1358	chr7	101408858	101408859	rs2690937	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	7q22.1		rs2690937-?	NR	3E-13				NR [~ 8900000] (imputed)	N
1358	chr7	101410677	101410678	rs2690935	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	7q22.1		rs2690935-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1358	chr7	101412888	101412889	rs954758	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	7q22.1		rs954758-?	NR	2E-14		0.918079	[0.9-0.94]	NR [685523]	N
1358	chr7	101418652	101418653	rs73183643	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Skin cancer	25,928 European ancestry cases, 466,275 European ancestry controls, 154 East Asian ancestry cases, 178,572 East Asian ancestry controls	NA	7q22.1		rs73183643-A	NR	1E-15		0.0887	[0.067-0.11] unit decrease	Affymetrix, Illumina [25845421] (imputed)	N
1358	chr7	101418652	101418653	rs73183643	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Keratinocyte cancer (MTAG)	at least 18,538 European ancestry cases, at least 340,302 European ancestry controls	NA	7q22.1	CUX1	rs73183643-G	0.749751	3E-19		1.09	[1.07-1.11]	Affymetrix [7600000] (imputed)	N
1358	chr7	101418652	101418653	rs73183643	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Basal cell carcinoma	31,787 European ancestry cases, 619,351 European ancestry controls	NA	7q22.1	CUX1	rs73183643-G	0.770142	1E-24		1.1111112	[1.09-1.14]	Affymetrix, Illumina [up to 9061544] (imputed)	N
1358	chr7	101418652	101418653	rs73183643	27539887	Chahal HS	2016-08-19	Nat Commun	Genome-wide association study identifies 14 novel risk alleles associated with basal cell carcinoma.	Basal cell carcinoma	12.945 European ancestry cases, 274,252 European ancestry controls	4,242 European ancestry cases, 12,802 European ancestry controls	7q22.1	CUX1	rs73183643-G	0.76	2E-13		1.1111112	[NR]	Illumina [at least 560000] (imputed)	N
1358	chr7	101420999	101421000	rs73183650	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	7q22.1		rs73183650-T	0.22	9E-9		5.76	z score increase	Affymetrix [9061022] (imputed)	N
1358	chr7	101423798	101423799	rs2529207	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	7q22.1	Intergenic	rs2529207-T	0.2698	5E-8	(MTAG)	0.0101	[0.0064-0.0138] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1358	chr7	101433017	101433018	rs2529218	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	7q22.1	NR	rs2529218-?	NR	2E-18				Illumina [at least 7383741] (imputed)	N
1359	chr7	101454761	101454762	rs2529233	33547071	Bonfante B	2021-02-05	Sci Adv	A GWAS in Latin Americans identifies novel face shape loci, implicating VPS13B and a Denisovan introgressed region in facial variation.	Facial morphology (ear size)	6,169 Latin American individuals	NA	7q22.1		rs2529233-?	NR	4E-8				Illumina [8703729] (imputed)	N
1359	chr7	101499929	101499930	rs139141690	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	7q22.1	CUX1	rs139141690-A	0.00478500000000004	4E-17		0.13965707	[0.11-0.17] unit increase	Affymetrix [93095623] (imputed)	N
1359	chr7	101499929	101499930	rs139141690	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	7q22.1	CUX1	rs139141690-A	0.00478400000000001	3E-18		0.14446408	[0.11-0.18] unit increase	Affymetrix [93095623] (imputed)	N
1359	chr7	101499929	101499930	rs139141690	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	7q22.1	CUX1	rs139141690-A	0.00453000000000003	3E-46		0.24572186	[0.21-0.28] unit increase	Affymetrix [93095623] (imputed)	N
1359	chr7	101499929	101499930	rs139141690	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	7q22.1	CUX1	rs139141690-A	0.00453300000000001	3E-70		0.30401337	[0.27-0.34] unit increase	Affymetrix [93095623] (imputed)	N
1359	chr7	101499929	101499930	rs139141690	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	7q22.1	CUX1	rs139141690-A	0.00453300000000001	1E-66		0.2947278	[0.26-0.33] unit increase	Affymetrix [93095623] (imputed)	N
1359	chr7	101499929	101499930	rs139141690	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	7q22.1	CUX1	rs139141690-A	0.00478800000000001	9E-10		0.1011196	[0.069-0.134] unit increase	Affymetrix [93095623] (imputed)	N
1359	chr7	101499929	101499930	rs139141690	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	7q22.1	CUX1	rs139141690-A	0.00478699999999999	1E-9		0.10061918	[0.068-0.133] unit increase	Affymetrix [93095623] (imputed)	N
1359	chr7	101499929	101499930	rs139141690	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q22.1	NR	rs139141690-G	0.995536	4E-98				Affymetrix, Illumina [17210439] (imputed)	N
1359	chr7	101499929	101499930	rs139141690	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	7q22.1	NR	rs139141690-G	0.995452	3E-102		0.312924	[0.28-0.34] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
1359	chr7	101499929	101499930	rs139141690	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	7q22.1	CUX1	rs139141690-A	0.0053	2E-9		0.1535754	[0.1-0.2] unit increase	Affymetrix [~ 2500000] (imputed)	N
1359	chr7	101499929	101499930	rs139141690	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	7q22.1	CUX1	rs139141690-A	0.0052	2E-9		0.1523484	[0.1-0.2] unit increase	Affymetrix [~ 2500000] (imputed)	N
1359	chr7	101499929	101499930	rs139141690	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	7q22.1	CUX1	rs139141690-A	0.005	4E-12		0.1843694	[0.13-0.24] unit increase	Affymetrix [~ 2500000] (imputed)	N
1359	chr7	101499929	101499930	rs139141690	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	7q22.1	CUX1	rs139141690-A	0.005	7E-34		0.3167943	[0.27-0.37] unit increase	Affymetrix [~ 2500000] (imputed)	N
1359	chr7	101499929	101499930	rs139141690	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	7q22.1	CUX1	rs139141690-A	0.005	2E-32		0.3118509	[0.26-0.36] unit increase	Affymetrix [~ 2500000] (imputed)	N
1359	chr7	101529911	101529912	rs10234809	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	7q22.1	NR	rs10234809-?	NR	5E-6		2.796	NR unit increase	Affymetrix [at least 600000] (imputed)	N
1359	chr7	101536725	101536726	rs4644158	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	7q22.1	NR	rs4644158-?	NR	2E-8				Illumina [at least 7383741] (imputed)	N
1359	chr7	101552439	101552440	rs71559437	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	7q22.1		rs71559437-A	NR	1E-12		0.93	[0.92-0.95]	Affymetrix, Illumina [NR] (imputed)	N
1359	chr7	101552439	101552440	rs71559437	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	7q22.1	CUX1	rs71559437-G	0.88	5E-12	(EA)	1.0752687	[1.04-1.1] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
1360	chr7	101637752	101637753	rs202157	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	7q22.1		rs202157-T	0.7019	1E-14		0.018	[0.014-0.022] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
1360	chr7	101637752	101637753	rs202157	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	7q22.1	CUX1	rs202157-C	0.30079999999999996	5E-14		1.0291243		Affymetrix [11880941] (imputed)	N
1360	chr7	101637752	101637753	rs202157	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	7q22.1	CUX1	rs202157-T	0.6992	5E-14		0.0138831	[0.01-0.018] unit decrease	Affymetrix [11880941] (imputed)	N
1360	chr7	101637752	101637753	rs202157	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	7q22.1		rs202157-?	NR	8E-15				NR [~ 8900000] (imputed)	N
1360	chr7	101663638	101663639	rs10279171	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	7q22.1	NR	rs10279171-T	NR	1E-10		0.0199	[0.014-0.026] unit increase	Affymetrix [9000000] (imputed)	N
1360	chr7	101675298	101675299	rs73405966	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	7q22.1		rs73405966-T	0.8233	4E-9		0.019	[0.013-0.025] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
1360	chr7	101675298	101675299	rs73405966	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	7q22.1	NR	rs73405966-T	NR	9E-6		1.06	[NR]	Illumina [7158791] (imputed)	N
1360	chr7	101686484	101686485	rs432002	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	7q22.1	NR	rs432002-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
1360	chr7	101689055	101689056	rs183121879	34404248	Tsao YC	2021-08-18	Cephalalgia	Genome-wide association study reveals susceptibility loci for self-reported headache in a large community-based Asian population.	Headache	2,084 Taiwanese ancestry cases, 11,822 Taiwanese ancestry controls	NA	7q22.1		rs183121879-T	0.0028	6E-8		2.997	[1.974-4.55]	Affymetrix [7842171] (imputed)	N
1360	chr7	101692986	101692987	rs413348	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	7q22.1		rs413348-A	0.7774	2E-11	(conditional-joint)	0.0114	[0.0081-0.0147] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1360	chr7	101693883	101693884	rs421168	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	7q22.1	NR	rs421168-G	0.39	2E-11		0.013	[0.0093-0.0167] unit increase	Affymetrix [2446094] (imputed)	N
1360	chr7	101693883	101693884	rs421168	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	7q22.1	NR	rs421168-G	0.39	5E-8				Affymetrix [2446094] (imputed)	N
1360	chr7	101695816	101695817	rs401966	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	7q22.1	Intergenic	rs401966-C	0.3961	4E-8	(MTAG)	0.0093	[0.006-0.0126] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1360	chr7	101695816	101695817	rs401966	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	7q22.1		rs401966-C	0.39	2E-11		0.0097	[0.007-0.0124] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1360	chr7	101695816	101695817	rs401966	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	7q22.1	Intergenic	rs401966-C	0.39	2E-13	(MTAG)	0.0098	[0.0073-0.0123] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1360	chr7	101699735	101699736	rs436483	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	7q22.1	NR	rs436483-?	NR	5E-9				Illumina [at least 7383741] (imputed)	N
1360	chr7	101707517	101707518	rs412332	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	7q22.1	CUX1	rs412332-T	0.8156	1E-9		0.02843539	[0.019-0.038] unit increase	Affymetrix [~ 2500000] (imputed)	N
1361	chr7	101714212	101714217	rs145007659	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	7q22.1	CUX1	rs145007659-G	0.821565	1E-17		0.025064204	[0.019-0.031] unit increase	Affymetrix [93095623] (imputed)	N
1361	chr7	101721005	101721006	rs372321	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	7q22.1	NA	rs372321-A	0.1776	2E-11		0.0156	[0.011-0.02] unit increase	NR [~ 27400000] (imputed)	N
1361	chr7	101728637	101728638	rs367026	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	7q22.1		rs367026-?	NR	2E-12				NR [~ 8900000] (imputed)	N
1361	chr7	101735235	101735236	rs201438	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	7q22.1		rs201438-G	0.45	9E-10		6.13	z score increase	Affymetrix [9061022] (imputed)	N
1361	chr7	101737326	101737327	rs201441	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	7q22.1	CUX1	rs201441-T	0.419318	1E-8		0.0110517	[0.0073-0.0148] unit increase	Affymetrix [NR] (imputed)	N
1361	chr7	101755521	101755522	rs201495	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	7q22.1		rs201495-T	0.559	6E-9		0.0112	[0.0075-0.0149] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1361	chr7	101775596	101775597	rs116934101	34450027	Boer CG	2021-08-24	Cell	Deciphering osteoarthritis genetics across 826,690 individuals from 9 populations.	Osteoarthritis of the hip or knee (with total joint replacement)	40,887 European ancestry cases, 327,689 European ancestry controls	NA	7q22.1		rs116934101-A	0.2658	7E-9		1.0608814	[1.039883167-1.082303492]	Affymetrix, Illumina [NR] (imputed)	N
1361	chr7	101777381	101777382	rs201530	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (multi-trait analysis)	90,939 European ancestry individuals	NA	7q22.1	CUX1	rs201530-A	0.47	7E-10		0.0053	NR unit increase	Affymetrix, Illumina [8002429] (imputed)	N
1361	chr7	101797485	101797486	rs436090	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7q22.1		rs436090-?	NR	3E-11				NR [~ 8900000] (imputed)	N
1361	chr7	101803539	101803540	rs411624	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	7q22.1	NR	rs411624-C	0.9557	2E-6	(EA)	0.0767	[0.045-0.108] unit increase	Illumina [~ 11800000] (imputed)	N
1361	chr7	101809850	101809851	rs365836	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	7q22.1	CUX1	rs365836-G	0.266219	7E-10		0.015733538	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1361	chr7	101809850	101809851	rs365836	22584459	Sasayama D	2012-05-15	Pharmacogenomics J	Possible association of CUX1 gene polymorphisms with antidepressant response in major depressive disorder.	Response to antidepressants	92 Japanese ancestry cases	136 Japanese ancestry cases	7q22.1	CUX1	rs365836-A	NR	2E-6		4.79	[2.38-9.64]	Illumina [291512]	N
1361	chr7	101810358	101810359	rs12538988	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	7q22.1	CUX1	rs12538988-A	0.291249	1E-11		0.01647115	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1361	chr7	101810358	101810359	rs12538988	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	7q22.1	CUX1	rs12538988-A	0.291227	1E-13		0.01809256	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1361	chr7	101820154	101820155	rs417013	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	7q22.1	NR	rs417013-?	NR	9E-7				Illumina [at least 7383741] (imputed)	N
1361	chr7	101824189	101824189	rs781996653	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	7q22.1	NR	rs781996653-TTATTTTATTG	0.639948	2E-8		0.00789903	[0.0054-0.0104] unit increase	Affymetrix [16585854] (imputed)	N
1361	chr7	101824189	101824189	rs781996653	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	7q22.1	NR	rs781996653-TTATTTTATTG	0.639948	5E-9		0.00898258	[0.0061-0.0119] unit increase	Affymetrix [16585866] (imputed)	N
1361	chr7	101831484	101831484	rs35225944	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	7q22.1	NR	rs35225944-T	0.669006	4E-19		0.00788168	[0.0061-0.0096] unit increase	Affymetrix [16582909] (imputed)	N
1361	chr7	101831484	101831484	rs35225944	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	7q22.1	NR	rs35225944-T	0.669576	4E-17		0.00936934	[0.007-0.0118] unit increase	Affymetrix [16582621] (imputed)	N
1361	chr7	101831484	101831484	rs35225944	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	7q22.1	NR	rs35225944-T	0.669006	1E-18		0.0086923	[0.0067-0.0106] unit increase	Affymetrix [16582965] (imputed)	N
1361	chr7	101831484	101831484	rs35225944	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	7q22.1	NR	rs35225944-T	0.669576	2E-17		0.0100317	[0.0075-0.0126] unit increase	Affymetrix [16582614] (imputed)	N
1361	chr7	101840715	101840716	rs10808119	27663945	Middeldorp CM	2016-08-05	J Am Acad Child Adolesc Psychiatry	A Genome-Wide Association Meta-Analysis of Attention-Deficit/Hyperactivity Disorder Symptoms in Population-Based Pediatric Cohorts.	Attention deficit hyperactivity disorder symptom score	17,666 children	NA	7q22.1	CUX1	rs10808119-A	0.46	7E-6				Affymetrix, Illumina [at least 5260671] (imputed)	N
1362	chr7	101859795	101859796	rs117802396	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	7q22.1		rs117802396-G	0.26	2E-10		6.37	z score increase	Affymetrix [9061022] (imputed)	N
1362	chr7	101860299	101860300	rs77630941	34380431	Tsai CK	2021-08-11	J Headache Pain	Identifying genetic variants for age of migraine onset in a Han Chinese population in Taiwan.	Migraine with aura (age at onset)	167 Han Chinese ancestry individuals	NA	7q22.1		rs77630941-?	NR	7E-10		28.37	unit increase	Affymetrix [NR]	N
1362	chr7	101864835	101864836	rs385417	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	7q22.1		rs385417-C	NR	2E-10		0.0158	[0.011-0.021] unit decrease	Affymetrix, Illumina [20529698] (imputed)	N
1362	chr7	101864835	101864836	rs385417	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	7q22.1	NR	rs385417-A	0.383066	5E-13		0.0153366	[0.011-0.019] unit increase	NR [NR]	N
1362	chr7	101865209	101865210	rs409224	26584805	Dorajoo R	2015-11-19	Genes Nutr	A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.	Plasma omega-3 polyunsaturated fatty acid levels (docosahexaenoic acid)	717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls	NA	7q22.1	NR	rs409224-C	0.0645	2E-6		0.202	unit decrease	Illumina [up to 1980188] (imputed)	N
1362	chr7	101865209	101865210	rs409224	26584805	Dorajoo R	2015-11-19	Genes Nutr	A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.	Plasma omega-3 polyunsaturated fatty acid level (eicosapentaenoic acid)	717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls	NA	7q22.1	NR	rs409224-C	0.0645	2E-6		0.1748	[0.1-0.25] unit decrease	Illumina [up to 1980188] (imputed)	N
1362	chr7	101867823	101867824	rs73187850	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q22.1	NR	rs73187850-T	0.237203	4E-14				Affymetrix, Illumina [19872809] (imputed)	N
1362	chr7	101867823	101867824	rs73187850	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	7q22.1	NR	rs73187850-T	0.27828	9E-17		0.018473	[0.014-0.023] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
1362	chr7	101878335	101878336	rs73187852	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	7q22.1		rs73187852-T	NR	5E-11		0.0128	[0.0091-0.0165] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
1362	chr7	101880794	101880795	rs56076326	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	7q22.1		rs56076326-?	NR	2E-16				NR [~ 8900000] (imputed)	N
1362	chr7	101882094	101882095	rs427941	26584805	Dorajoo R	2015-11-19	Genes Nutr	A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.	Plasma omega-3 polyunsaturated fatty acid level (eicosapentaenoic acid)	717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls	NA	7q22.1	NR	rs427941-T	0.9211	7E-6		0.1496	[0.085-0.215] unit increase	Illumina [up to 1980188] (imputed)	N
1362	chr7	101883284	101883285	rs112284461	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	7q22.1		rs112284461-C	0.929	9E-9		0.015	[0.0091-0.0209] unit decrease	NR [NR] (imputed)	N
1362	chr7	101883684	101883685	rs73187854	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	7q22.1	NR	rs73187854-G	0.2737	1E-8				NR [9056863] (imputed)	N
1362	chr7	101884395	101884396	rs1297620	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	7q22.1	NR	rs1297620-?	NR	7E-6		4.492	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1362	chr7	101884395	101884396	rs1297620	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	7q22.1	CUX1	rs1297620-A	NR	3E-9		0.02923038	[0.02-0.039] unit decrease	Affymetrix [NR]	N
1362	chr7	101902604	101902605	rs59860440	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	7q22.1		rs59860440-T	NR	9E-15		0.0143	[0.011-0.018] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
1362	chr7	101909004	101909005	rs1725600	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Cerebellum cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	7q22.1	CUX1	rs1725600-?		3E-6				Illumina [4322238] (imputed)	N
1362	chr7	101942961	101942962	rs115175234	31049640	Chen J	2019-05-02	Diabetologia	Genome-wide association study of type 2 diabetes in Africa.	Type 2 diabetes	2,633 African ancestry cases, 1,714 African ancestry controls	NA	7q22.1	SH2B2	rs115175234-G	0.034	9E-6		1.64	[1.31-2.05]	Affymetrix, Illumina [12148595] (imputed)	N
1362	chr7	101949127	101949128	rs2960266	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	7q22.1	NR	rs2960266-T	NR	3E-10		0.0155	[0.011-0.02] unit increase	Affymetrix [9000000] (imputed)	N
1362	chr7	101949127	101949128	rs2960266	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	7q22.1	NR	rs2960266-T	NR	4E-10		0.0155	[0.011-0.02] unit decrease	Affymetrix [9000000] (imputed)	N
1363	chr7	102008351	102008352	rs6973090	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	7q22.1	NR	rs6973090-G	0.75	4E-8		1.0384216	[1.02-1.05]	Affymetrix, Illumina [NR] (imputed)	N
1363	chr7	102030934	102030935	rs117530689	26955885	Lane JM	2016-03-09	Nat Commun	Genome-wide association analysis identifies novel loci for chronotype in 100,420 individuals from the UK Biobank.	Chronotype	100,420 European ancestry individuals	NA	7q22.1	POLR2J3/RASA4	rs117530689-C	NR	4E-6	(conditioned on rs372229746)	0.06	[0.035-0.085] unit increase	Affymetrix [~ 73355677] (imputed)	N
1363	chr7	102038317	102038318	rs56376556	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	7q22.1	FBXL13	rs56376556-T	0.0533	2E-6		1.08	[1.04-1.11]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1363	chr7	102058178	102058179	rs12534945	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	7q22.1	NA	rs12534945-C	0.7539	3E-10	(Female)	1.0559661	[1.04-1.07]	Affymetrix, Illumina [NR] (imputed)	N
1363	chr7	102065650	102065651	rs1047998	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	7q22.1		rs1047998-T	0.2527	3E-9		0.015	[0.011-0.019] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
1363	chr7	102083231	102083232	rs6960360	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	7q22.1	ORAI2	rs6960360-A	0.4004	1E-12		0.0122393	[0.0089-0.0156] unit decrease	Affymetrix [11880941] (imputed)	N
1363	chr7	102083231	102083232	rs6960360	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	7q22.1		rs6960360-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1363	chr7	102086551	102086552	rs77655131	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	7q22.1		rs77655131-T	0.1223	5E-11		0.022	[0.016-0.028] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
1363	chr7	102101177	102101178	rs7795180	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	7q22.1	ALKBH4	rs7795180-C	0.954	3E-23		1.0938525		Affymetrix [11880941] (imputed)	N
1364	chr7	102111924	102111925	rs374409015	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7q22.1		rs374409015-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1364	chr7	102114089	102114090	rs1131359	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	7q22.1	POLR2J	rs1131359-T	0.9746	3E-13		0.039267	[0.029-0.05] unit increase	Affymetrix [11880941] (imputed)	N
1364	chr7	102115418	102115419	rs62483809	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	7q22.1		rs62483809-C	0.279235	1E-8		0.0251936	[0.017-0.034] unit increase	Illumina [13476266] (imputed)	N
1364	chr7	102158814	102158815	rs372229746	27494321	Jones SE	2016-08-05	PLoS Genet	Genome-Wide Association Analyses in 128,266 Individuals Identifies New Morningness and Sleep Duration Loci.	Morning vs. evening chronotype	114,765 British individuals	NA	7q22.1	ORAI2, RASA4	rs372229746-G	0.55	7E-7		1.06	[1.04-1.08]	NR [16760980] (imputed)	N
1364	chr7	102158814	102158815	rs372229746	27494321	Jones SE	2016-08-05	PLoS Genet	Genome-Wide Association Analyses in 128,266 Individuals Identifies New Morningness and Sleep Duration Loci.	Chronotype	127,898 British individuals	89,283 individuals	7q22.1	ORAI2, RASA4	rs372229746-G	0.55	8E-15		0.028	[0.018-0.038] unit increase	NR [16760980] (imputed)	N
1364	chr7	102158814	102158815	rs372229746	26955885	Lane JM	2016-03-09	Nat Commun	Genome-wide association analysis identifies novel loci for chronotype in 100,420 individuals from the UK Biobank.	Morning vs. evening chronotype	8,724 European ancestry evening chronotype individuals, 26,948 European ancestry morning chronotype individuals	NA	7q22.1	FBXL13	rs372229746-A	0.45	4E-7		1.12	[1.07-1.16]	Affymetrix [73355677] (imputed)	N
1364	chr7	102158814	102158815	rs372229746	26955885	Lane JM	2016-03-09	Nat Commun	Genome-wide association analysis identifies novel loci for chronotype in 100,420 individuals from the UK Biobank.	Chronotype	100,420 European ancestry individuals	NA	7q22.1	FBXL13	rs372229746-A	0.45	5E-10		0.034	[0.025-0.045] unit increase	Affymetrix [~ 73355677] (imputed)	N
1365	chr7	102336978	102336979	rs75990271	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	7q22.1	RASA4	rs75990271-T	0.815	3E-11		1.07	[1.05-1.09]	Affymetrix, Illumina [11800000] (imputed)	N
1365	chr7	102349123	102349124	rs60984271	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin I concentration	1,606 African American individuals	NA	7q22.1		rs60984271-?	NR	4E-6		0.19	[0.11-0.27] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1365	chr7	102349123	102349124	rs60984271	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	7q22.1		rs60984271-A	0.8144	3E-10		0.02	[0.014-0.026] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
1366	chr7	102383662	102383663	rs4729854	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	7q22.1	AK301666, FAM185A	rs4729854-T	0.5299	4E-36		1.0490978		Affymetrix [11880941] (imputed)	N
1366	chr7	102383662	102383663	rs4729854	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	7q22.1	AK301666, FAM185A	rs4729854-T	0.5299	4E-36		1.0496954		Affymetrix [11880941] (imputed)	N
1366	chr7	102383662	102383663	rs4729854	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Type 2 diabetes	approximately 459,000 European ancestry individuals	NA	7q22.1		rs4729854-?	NR	3E-10				NR [~ 8900000] (imputed)	N
1366	chr7	102383662	102383663	rs4729854	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	7q22.1		rs4729854-?	NR	3E-23				NR [~ 8900000] (imputed)	N
1366	chr7	102388399	102388400	rs375256358	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	7q22.1		rs375256358-G	0.016841728	2E-10		0.27597198	[0.19-0.36] unit decrease	Illumina [13429769] (imputed)	N
1366	chr7	102410476	102410477	rs139722172	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	7q22.1		rs139722172-G	NR	2E-12		0.0786	[0.057-0.1] unit decrease	Affymetrix, Illumina [25845091] (imputed)	N
1366	chr7	102429703	102429704	rs7778418	33888516	Zheng T	2021-04-22	Gut	Genome-wide analysis of 944 133 individuals provides insights into the etiology of haemorrhoidal disease.	Haemorrhoidal disease	218,920 European ancestry cases, 725,213 European ancestry controls	NA	7q22.1	FAM185A	rs7778418-?	0.3407	6E-18		1.04	[1.03-1.05]	Affymetrix, Illumina [8494288] (imputed)	N
1366	chr7	102433677	102433678	rs112613078	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	7q22.1		rs112613078-A	0.81	2E-20		0.025	[0.019-0.031] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
1366	chr7	102436906	102436907	rs3972456	26835600	Hu Y	2016-02-02	Nat Commun	GWAS of 89,283 individuals identifies genetic variants associated with self-reporting of being a morning person.	Morning vs. evening chronotype	38,937 European ancestry morning chronotype individuals, 50,346 European ancestry evening chronotype individuals	NA	7q22.1	FBXL13, FAM185A	rs3972456-A	0.29	6E-9		1.0869565		Illumina [7427422] (imputed)	N
1366	chr7	102446862	102446863	rs6949391	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	7q22.1	FAM185A, PMPCB, LRRC17	rs6949391-T	0.336454916955808	4E-14		0.0042875	[NR] unit increase	Affymetrix [> 30000000] (imputed)	N
1366	chr7	102465250	102465253	rs57237364	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	7q22.1	NR	rs57237364-C	0.3408	5E-7	(EA)	0.0331	[0.02-0.046] unit increase	Illumina [~ 11800000] (imputed)	N
1366	chr7	102479718	102479719	rs76165167	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	7q22.1	NR	rs76165167-T	0.1548	8E-10				NR [9056863] (imputed)	N
1366	chr7	102481890	102481891	rs7781557	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal adenoma (advanced)	636 Austrian ancestry cases, 855 Austrian ancestry controls	NA	7q22.1	Intergenic	rs7781557-?		9E-6		1.5073862	[NR]	Affymetrix [492217] (imputed)	N
1366	chr7	102483080	102483081	rs17474942	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	7q22.1		rs17474942-T	0.02161	4E-17		0.062	[0.048-0.076] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
1366	chr7	102486253	102486254	rs11496066	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	7q22.1	FBXL13	rs11496066-T	0.8181	1E-8		1.08	[1.05-1.11]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1366	chr7	102494938	102494939	rs58680618	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	7q22.1		rs58680618-G	0.14	3E-10		6.28	z score increase	Affymetrix [9061022] (imputed)	N
1366	chr7	102497568	102497569	rs6465876	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	7q22.1	FBXL13	rs6465876-T	0.3565	4E-24		1.0401		Affymetrix [11880941] (imputed)	N
1367	chr7	102503204	102503205	rs73406288	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	7q22.1	FBXL13	rs73406288-T	0.0505	2E-6		0.0185662	[0.011-0.026] unit increase	Affymetrix [11880941] (imputed)	N
1367	chr7	102504040	102504041	rs11978799	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	7q22.1		rs11978799-G	0.14	7E-10		6.16	z score increase	Affymetrix [9061022] (imputed)	N
1367	chr7	102519030	102519031	rs17135875	24165912	He J	2013-10-28	Circ Cardiovasc Genet	Genome-wide association study identifies 8 novel loci associated with blood pressure responses to interventions in Han Chinese.	Blood pressure measurement (cold pressor test)	1,881 Han Chinese ancestry individuals	698 Han Chinese ancestry individuals	7q22.1	FBXL13	rs17135875-C	0.01	4E-9	(MAP, Time 0)	3.44	[2.30-4.58] mmHg decrease	Affymetrix [2216774] (imputed)	N
1367	chr7	102519030	102519031	rs17135875	24165912	He J	2013-10-28	Circ Cardiovasc Genet	Genome-wide association study identifies 8 novel loci associated with blood pressure responses to interventions in Han Chinese.	Blood pressure measurement (cold pressor test)	1,881 Han Chinese ancestry individuals	698 Han Chinese ancestry individuals	7q22.1	FBXL13	rs17135875-C	0.01	3E-6	(SBP, Time 0)	4.81	[2.81-6.81] mmHg decrease	Affymetrix [2216774] (imputed)	N
1367	chr7	102519030	102519031	rs17135875	24165912	He J	2013-10-28	Circ Cardiovasc Genet	Genome-wide association study identifies 8 novel loci associated with blood pressure responses to interventions in Han Chinese.	Blood pressure measurement (cold pressor test)	1,881 Han Chinese ancestry individuals	698 Han Chinese ancestry individuals	7q22.1	FBXL13	rs17135875-C	0.01	1E-6	(DBP, Time 0)	2.81	[1.67-3.95] mmHg decrease	Affymetrix [2216774] (imputed)	N
1367	chr7	102522269	102522270	rs189071385	32534018	Liu X	2020-06-10	Brain Behav Immun	Genetic factors underlying the bidirectional relationship between autoimmune and mental disorders - findings from a Danish population-based study.	Autoimmune disease and mental disorder	1,036 Danish ancestry cases, 19,790 Danish ancestry controls	NA	7q22.1	NR	rs189071385-?	NR	1E-8		10.65	[3.21-35.36]	NR [7721839] (imputed)	N
1367	chr7	102524834	102524835	rs76187115	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	7q22.1	FBXL13	rs76187115-T	0.9798	2E-19		0.0542925	[0.043-0.066] unit decrease	Affymetrix [11880941] (imputed)	N
1367	chr7	102539401	102539402	rs148266530	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	7q22.1		rs148266530-T	0.02025	1E-8		0.044	[0.028-0.06] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
1367	chr7	102539401	102539402	rs148266530	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	7q22.1	FBXL13	rs148266530-T	0.0286	2E-12		0.0358219	[0.026-0.046] unit increase	Affymetrix [11880941] (imputed)	N
1367	chr7	102551867	102551868	rs77104831	30636644	Nazarian A	2019-01-12	Alzheimers Res Ther	Genome-wide analysis of genetic predisposition to Alzheimer's disease and related sex disparities.	Alzheimer's disease	952 European ancestry male cases, 1,789 European ancestry female cases, 6,337 European ancestry male controls, 8,402 European ancestry female controls	NA	7q22.1	FBXL13	rs77104831-?	NR	2E-6	(males)	4.27716		Affymetrix, Illumina [2928658] (imputed)	N
1367	chr7	102556010	102556011	rs847649	26835600	Hu Y	2016-02-02	Nat Commun	GWAS of 89,283 individuals identifies genetic variants associated with self-reporting of being a morning person.	Morning vs. evening chronotype	38,937 European ancestry morning chronotype individuals, 50,346 European ancestry evening chronotype individuals	NA	7q22.1	NR	rs847649-?	NR	7E-6				Illumina [7427422] (imputed)	N
1367	chr7	102611957	102611958	rs6945997	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	7q22.1	NR	rs6945997-C	0.1735	3E-10				NR [9056863] (imputed)	N
1368	chr7	102635776	102635777	rs140647239	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	7q22.1	FBXL13	rs140647239-C	0.01749999999999996	1E-13		1.1053388		Affymetrix [11880941] (imputed)	N
1368	chr7	102645051	102645052	rs79055896	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	7q22.1		rs79055896-A	0.94261	5E-10		0.033	[0.023-0.043] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
1368	chr7	102662477	102662478	rs7458786	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	7q22.1	NR	rs7458786-A	0.1665	9E-6	(EA)	0.0379	[0.021-0.055] unit increase	Illumina [~ 11800000] (imputed)	N
1368	chr7	102674953	102674954	rs79259191	34586716	Chen J	2021-09-29	Mol Genet Genomic Med	Heritability and genome-wide association study of blood pressure in Chinese adult twins.	Systolic blood pressure	137 Chinese ancestry twins	NA	7q22.1		rs79259191-?	NR	7E-6				Illumina [7401356] (imputed)	N
1368	chr7	102674953	102674954	rs79259191	34586716	Chen J	2021-09-29	Mol Genet Genomic Med	Heritability and genome-wide association study of blood pressure in Chinese adult twins.	Mean arterial pressure	137 Chinese ancestry twins	NA	7q22.1		rs79259191-?	NR	4E-7				Illumina [7401356] (imputed)	N
1368	chr7	102674953	102674954	rs79259191	34586716	Chen J	2021-09-29	Mol Genet Genomic Med	Heritability and genome-wide association study of blood pressure in Chinese adult twins.	Diastolic blood pressure	137 Chinese ancestry twins	NA	7q22.1		rs79259191-?	NR	4E-6				Illumina [7401356] (imputed)	N
1368	chr7	102700246	102700247	rs7780405	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	7q22.1		rs7780405-C	0.13	3E-11		6.65	z score increase	Affymetrix [9061022] (imputed)	N
1368	chr7	102722954	102722955	rs79582810	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	7q22.1	NR	rs79582810-?	NR	8E-6		1905.387	NR unit increase	Illumina [2379855]	N
1369	chr7	102783526	102783527	rs56196003	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	7q22.1	NR	rs56196003-A	0.2198	5E-6	(EA)	0.0363	[0.021-0.052] unit increase	Illumina [~ 11800000] (imputed)	N
1369	chr7	102786430	102786431	rs180725393	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	7q22.1	NR	rs180725393-C	NR	4E-7	(GEE model)	1.0867	[0.67-1.51] unit increase	NR [NR] (imputed)	N
1369	chr7	102800136	102800137	rs1968204	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	7q22.1	NR	rs1968204-C	0.893	1E-12		0.0566	[0.041-0.072] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
1369	chr7	102882756	102882757	rs117280728	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7q22.1		rs117280728-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1370	chr7	102891783	102891784	rs6946892	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	7q22.1	NR	rs6946892-C	0.7489	1E-7	(EA)	0.0413	[0.026-0.057] unit decrease	Illumina [~ 11800000] (imputed)	N
1370	chr7	102901688	102901689	rs114777090	34411106	Liu C	2021-08-19	PLoS Genet	Genome scans of facial features in East Africans and cross-population comparisons reveal novel associations.	Facial morphology (segment 18)	2,595 Tanzanian ancestry individuals	NA	7q22.1		rs114777090-?	NR	8E-9				Illumina [NR] (imputed)	N
1370	chr7	102904401	102904402	rs147874219	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	7q22.1	NR	rs147874219-C	NR	8E-6	(GEE model)	0.96543	[0.54-1.39] unit increase	NR [NR] (imputed)	N
1370	chr7	102905111	102905112	rs567247008	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q22.1	NR	rs567247008-C	0.997683	1E-23				Affymetrix, Illumina [17210439] (imputed)	N
1370	chr7	102940371	102940371	rs764408621	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		PMPCB	rs764408621-?	NR	2E-11		1.43796	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1370	chr7	102957155	102957156	rs3948710	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	7q22.1	ZRF1	rs3948710-?	NR	9E-6	(TAG 46:2)	0.22580819	[0.13-0.33] unit increase	Affymetrix [at least 2500000] (imputed)	N
1370	chr7	102976384	102976385	rs187653072	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	7q22.1	NR	rs187653072-C	0.0271	2E-12		0.0967	[0.07-0.124] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1370	chr7	102987582	102987583	rs62482405	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	7q22.1	RELN	rs62482405-G	0.0819	7E-6		1.05	[1.03-1.08]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1370	chr7	103006612	103006613	rs117430989	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	7q22.1		rs117430989-?	NR	8E-9				NR [~ 8900000] (imputed)	N
1371	chr7	103030227	103030228	rs62482416	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		SLC26A5	rs62482416-?	NR	9E-9	(male)	1.49324	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1371	chr7	103030227	103030228	rs62482416	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		SLC26A5	rs62482416-?	NR	3E-9		0.835117	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1371	chr7	103061824	103061825	rs141952919	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hearing difficulty/problems: Yes (UKB data field 2247_1)	114,318 European ancestry cases, 323,449 European ancestry controls	NA	7q22.1		rs141952919-G	0.005044	1E-11		0.23	[0.16-0.3] unit increase	NR [11842647] (imputed)	N
1371	chr7	103061824	103061825	rs141952919	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hearing difficulty/problems: No (UKB data field 2247_0)	323,343 European ancestry cases, 114,424 European ancestry controls	NA	7q22.1		rs141952919-G	0.006275	1E-11		0.23	[0.16-0.3] unit decrease	NR [11842647] (imputed)	N
1371	chr7	103061824	103061825	rs141952919	34108613	Ivarsdottir EV	2021-06-09	Commun Biol	The genetic architecture of age-related hearing impairment revealed by genome-wide association analysis.	Age-related hearing impairment	121,934 European ancestry cases, 591,699 European ancestry controls	NA	7q22.1	SLC26A5	rs141952919-G	0.52	2E-13	(additive)	1.28	[NR]	Affymetrix, Illumina [46900000] (imputed)	N
1371	chr7	103064805	103064806	rs735459	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	7q22.1	SLC26A5	rs735459-C	0.3609	7E-22		1.0369141		Affymetrix [11880941] (imputed)	N
1371	chr7	103066775	103066776	rs2190422	26835600	Hu Y	2016-02-02	Nat Commun	GWAS of 89,283 individuals identifies genetic variants associated with self-reporting of being a morning person.	Morning vs. evening chronotype	38,937 European ancestry morning chronotype individuals, 50,346 European ancestry evening chronotype individuals	NA	7q22.1	NR	rs2190422-?	NR	2E-6				Illumina [7427422] (imputed)	N
1371	chr7	103071192	103071193	rs1075737	30289880	Qi G	2018-10-05	PLoS Genet	Heritability informed power optimization (HIPO) leads to enhanced detection of genetic associations across multiple traits.	Social science traits (pleiotropy) (HIPO component 1)	up to 630,791 European ancestry individuals	NA	7q22.1	NR	rs1075737-?	NR	2E-7				NR [2100000]	N
1371	chr7	103121047	103121048	rs3808044	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Tenofovir clearance in HIV infection	243 European ancestry cases, 149 African American cases, 100 Hispanic American cases, 9 unknown ancestry cases	NA	7q22.1	NR	rs3808044-?		2E-6	(African)			Illumina [~ 5190000] (imputed)	N
1371	chr7	103122644	103122645	rs10233848	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	7q22.1	Intergenic	rs10233848-A	0.7095	4E-8	(MTAG)	0.01	[0.0065-0.0135] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1371	chr7	103122644	103122645	rs10233848	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	7q22.1	Intergenic	rs10233848-A	0.7014	1E-8	(MTAG)	0.0081	[0.0054-0.0108] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1371	chr7	103127619	103127620	rs7808296	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	7q22.1	RELN	rs7808296-C	0.684557	3E-11		0.0100374	[0.0071-0.013] unit decrease	Affymetrix [12370749]	N
1371	chr7	103128823	103128824	rs6944123	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	7q22.1		rs6944123-T	0.3146	2E-15		0.018	[0.014-0.022] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
1371	chr7	103138864	103138865	rs148099564	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA	7q22.1	NR	rs148099564-?	NR	2E-8		0.4105	[0.27-0.55] unit decrease	Illumina [at least 560000] (imputed)	N
1371	chr7	103148601	103148602	rs6956101	28203683	Heit JA	2017-02-16	Thromb Haemost	Identification of unique venous thromboembolism-susceptibility variants in African-Americans.	Venous thromboembolism adjusted for sickle cell variant rs77121243-T	393 African American cases, 4,941 African American controls.	NR	7q22.1	RELN	rs6956101-G	0.0486	4E-7		2.402	[1.714-3.368]	Affymetrix, Illumina [14074516] (imputed)	N
1372	chr7	103175443	103175444	rs1008126	23934736	Yu B	2013-08-11	Genet Epidemiol	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels (Pyroglutamine)	1,260 African American individuals	NA	7q22.1	RELN	rs1008126-C		8E-6		0.09	[0.05-0.14] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1372	chr7	103186270	103186271	rs10953388	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	7q22.1	NR	rs10953388-T	NR	8E-6	(GEE model)	0.43339	[0.24-0.62] unit decrease	NR [NR] (imputed)	N
1372	chr7	103186270	103186271	rs10953388	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	7q22.1	RELN	rs10953388-T	0.3726	2E-14		1.0292		Affymetrix [11880941] (imputed)	N
1372	chr7	103188060	103188061	rs2041475	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA		RELN	rs2041475-C	0.199	5E-9		0.094	[0.063-0.125] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1372	chr7	103217337	103217338	rs362649	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	7q22.1	NR	rs362649-?	NR	1E-13	(cerebellar vermal lobules VIII X)			NR [9227495] (imputed)	N
1372	chr7	103229280	103229281	rs2159676	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	7q22.1	NR	rs2159676-?	NR	2E-10	(cerebellar vermal lobules VIII X)			NR [9227495] (imputed)	N
1372	chr7	103257123	103257124	rs2299346	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	7q22.1	NR	rs2299346-?	NR	1E-13	(cerebellar vermal lobules VIII X)			NR [9227495] (imputed)	N
1373	chr7	103298864	103298865	rs2215535	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	7q22.1	NR	rs2215535-?	NR	1E-13	(cerebellar vermal lobules VIII X)			NR [9227495] (imputed)	N
1373	chr7	103307626	103307627	rs78623212	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-18 levels	3,636 Finnish ancestry individuals	NA	7q22.1	NR	rs78623212-C		7E-7		0.8705	[0.52-1.22] SD units decrease	NR [10700000] (imputed)	N
1373	chr7	103316377	103316378	rs138903843	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	7q22.1	NR	rs138903843-?	NR	1E-17	(cerebellar vermal lobules VIII X)			NR [9227495] (imputed)	N
1373	chr7	103321473	103321474	rs12705139	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	7q22.1	NR	rs12705139-?	NR	3E-20	(cerebellar vermal lobules VIII X)			NR [9227495] (imputed)	N
1373	chr7	103353092	103353093	rs3819457	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	7q22.1	NR	rs3819457-?	NR	2E-14	(cerebellar vermal lobules VIII X)			NR [9227495] (imputed)	N
1373	chr7	103356061	103356062	rs12705149	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	7q22.1	NR	rs12705149-?	NR	4E-12	(cerebellar vermal lobules VI VII)			NR [9227495] (imputed)	N
1373	chr7	103356061	103356062	rs12705149	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	7q22.1	NR	rs12705149-?	NR	1E-11	(cerebellar vermal lobules VIII X)			NR [9227495] (imputed)	N
1373	chr7	103360053	103360054	rs62482639	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	7q22.1	NR	rs62482639-?	NR	2E-25	(cerebellar vermal lobules VIII X)			NR [9227495] (imputed)	N
1373	chr7	103360221	103360222	rs117446694	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	7q22.1	NR	rs117446694-?	NR	2E-8	(cerebellar vermal lobules VI VII)			NR [9227495] (imputed)	N
1373	chr7	103362483	103362484	rs496907	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	7q22.1	NR	rs496907-?	NR	6E-9	(cerebellar vermal lobules VIII X)			NR [9227495] (imputed)	N
1373	chr7	103364619	103364619	rs35191248	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	7q22.1	NR	rs35191248-?	NR	3E-18	(cerebellar vermal lobules VIII X)			NR [9227495] (imputed)	N
1373	chr7	103373050	103373051	rs2299379	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	7q22.1	NR	rs2299379-?	NR	4E-19	(cerebellar vermal lobules VIII X)			NR [9227495] (imputed)	N
1373	chr7	103375265	103375266	rs10487166	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	7q22.1	NR	rs10487166-?	NR	1E-11	(cerebellar vermal lobules VIII X)			NR [9227495] (imputed)	N
1373	chr7	103378286	103378287	rs13239238	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	7q22.1	NR	rs13239238-?	NR	6E-14	(cerebellar vermal lobules VIII X)			NR [9227495] (imputed)	N
1373	chr7	103385967	103385968	rs139895727	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	7q22.1	NR	rs139895727-?	NR	3E-8	(cerebellar vermal lobules VIII X)			NR [9227495] (imputed)	N
1373	chr7	103389084	103389085	rs528528	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	7q22.1	NR	rs528528-?	NR	2E-21	(cerebellar vermal lobules VIII X)			NR [9227495] (imputed)	N
1373	chr7	103390131	103390132	rs71582886	33824429	Fjukstad KK	2021-04-06	Pharmacogenomics J	Genetic variants associated with cardiometabolic abnormalities during treatment with selective serotonin reuptake inhibitors: a genome-wide association study.	LDL levels x SSRI levels (escitalopram or citalopram) interaction in schizophrenia or bipolar disorder	181 European ancestry individuals	NA	7q22.1	RELN	rs71582886-A	NR	1E-6		12.2189	[7.87-16.57] unit decrease	Illumina [NR] (imputed)	N
1373	chr7	103395351	103395352	rs492063	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	7q22.1	NR	rs492063-?	NR	9E-12	(cerebellar vermal lobules VIII X)			NR [9227495] (imputed)	N
1373	chr7	103398666	103398667	rs6965019	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	7q22.1	NR	rs6965019-?	NR	3E-16				Affymetrix [NR]	N
1373	chr7	103404814	103404815	rs7341475	28076899	Taylor KE	2017-01-11	Arthritis Rheumatol	Genome-Wide Association Analysis Reveals Genetic Heterogeneity of Sjogren's Syndrome According to Ancestry.	Sjogren's syndrome	585 European ancestry cases, up to 51 African ancestry cases, up to 164 Hispanic/Native american cases, up to 570 Asian ancestry cases, up to 59 cases, 1,546 European ancestry controls, 495 African ancestry controls, 237 Hispanic/Native American controls, 306 Asian ancestry controls, 148 controls.	NA	7q22.1	RELN	rs7341475-?		3E-7		1.39	[1.23-1.57]	Illumina [1444884]	N
1373	chr7	103404814	103404815	rs7341475	28076899	Taylor KE	2017-01-11	Arthritis Rheumatol	Genome-Wide Association Analysis Reveals Genetic Heterogeneity of Sjogren's Syndrome According to Ancestry.	Sjogren's syndrome	585 European ancestry cases, 1,546 European ancestry controls	NA	7q22.1	RELN	rs7341475-?		9E-6		1.43	[1.22-1.68]	Illumina [1444884]	N
1373	chr7	103404814	103404815	rs7341475	18282107	Shifman S	2008-02-15	PLoS Genet	Genome-wide association identifies a common variant in the reelin gene that increases the risk of schizophrenia only in women.	Schizophrenia	660 Ashkenazi Jewish cases, 2,271 Ashkenazi Jewish controls	1,859 European ancestry cases, 3,943 European ancestry controls, 759 Ashkenazi Jewish cases, 3,389 Ashkenazi Jewish controls, 415 Han Chinese ancestry cases, 458 Han Chinese ancestry controls	7q22.1	RELN	rs7341475-G	0.62	9E-7		1.58	[1.31-1.89]	Affymetrix [510552]	N
1374	chr7	103416540	103416541	rs12375196	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	7q22.1		rs12375196-A	0.42	2E-9				NR [NR] (imputed)	N
1374	chr7	103416540	103416541	rs12375196	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	7q22.1		rs12375196-A	0.42	3E-12		0.01	% increase	NR [NR] (imputed)	N
1374	chr7	103416540	103416541	rs12375196	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	7q22.1	NR	rs12375196-?	NR	1E-21				Affymetrix [~ 8270000] (imputed)	N
1374	chr7	103416540	103416541	rs12375196	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	7q22.1		rs12375196-?	NR	2E-20				NR [~ 8900000] (imputed)	N
1374	chr7	103417133	103417134	rs262338	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	7q22.1	RELN	rs262338-G	0.547323	5E-10		0.00881868	[0.006-0.0116] unit decrease	Affymetrix [12370749]	N
1374	chr7	103417556	103417557	rs11496125	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		7q22.1	RELN	rs11496125-C	0.5748	5E-15		0.0109238	[0.0082-0.0137] unit decrease	Affymetrix [12370749]	N
1374	chr7	103417556	103417557	rs11496125	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	7q22.1	NA	rs11496125-T	0.4053	9E-23		0.017	[0.014-0.02] unit increase	NR [~ 27400000] (imputed)	N
1374	chr7	103418845	103418846	rs2299383	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	7q22.1	NA	rs2299383-T	0.3982	7E-23		0.0162	[0.013-0.019] unit increase	NR [~ 27400000] (imputed)	N
1374	chr7	103418845	103418846	rs2299383	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	7q22.1	NA	rs2299383-T	0.3982	7E-23		0.0162	[0.013-0.019] unit increase	NR [~ 27400000] (imputed)	N
1374	chr7	103418845	103418846	rs2299383	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	7q22.1	RELN	rs2299383-T	0.423455221755939	1E-8		0.0412	[0.027-0.056] unit increase	NR [5035015] (imputed)	N
1374	chr7	103427227	103427228	rs36078773	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	7q22.1		rs36078773-G	NR	1E-14		0.0129	[0.0096-0.0162] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1374	chr7	103437559	103437560	rs153960	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	7q22.1	NR	rs153960-?	NR	8E-10				Affymetrix [~ 8270000] (imputed)	N
1374	chr7	103444977	103444978	rs39328	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	7q22.1	NR	rs39328-C	0.5733	3E-9		0.0275	[0.018-0.037] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
1374	chr7	103444977	103444978	rs39328	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	7q22.1	RELN	rs39328-T	0.4334	4E-8		1.04	[1.02-1.05]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1374	chr7	103449554	103449555	rs39330	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	7q22.1		rs39330-T	NR	1E-15		0.0152	[0.011-0.019] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1374	chr7	103527368	103527369	rs3914132	19230858	Schrauwen I	2009-02-18	Am J Hum Genet	A genome-wide analysis identifies genetic variants in the RELN gene associated with otosclerosis.	Otosclerosis	302 cases, 302 controls	847 cases, 872 controls	7q22.1	RELN	rs3914132-?	0.23	2E-8		1.54	[1.32-1.79]	Illumina [~ 555000]	N
1374	chr7	103546037	103546038	rs73712289	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Rheumatic fever	1,115 European ancestry cases, 88,076 European ancestry controls	NA	7q22.1	NR	rs73712289-?	NR	2E-6		0.5817	[0.32-0.84] unit increase	Illumina [at least 560000] (imputed)	N
1375	chr7	103625876	103625877	rs4298437	20452100	Kramer PL	2010-05-06	Neurobiol Aging	Alzheimer disease pathology in cognitively healthy elderly: a genome-wide study.	Alzheimer's disease	185 European ancestry low NFT individuals, 114 European ancestry high NFT individuals	NA	7q22.1	RELN	rs4298437-A	0.26	2E-6				Illumina [292175]	N
1375	chr7	103628035	103628036	rs17157903	19010793	Baranzini SE	2008-11-14	Hum Mol Genet	Genome-wide association analysis of susceptibility and clinical phenotype in multiple sclerosis.	Multiple sclerosis (age of onset)	978 European ancestry cases, 883 European ancestry controls	NA	7q22.1	RELN	rs17157903-?	0.14	3E-6			[NR]	Illumina [551642]	N
1375	chr7	103647343	103647344	rs62485867	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	7q22.1	RELN, ORC5	rs62485867-A	NR	3E-6	(sleep offset, weekdays)	0.3091	[0.18-0.44] unit increase	Affymetrix [7141204] (imputed)	N
1375	chr7	103660842	103660843	rs62485870	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Sucrose liking	686 European ancestry twins	NA	7q22.1	RELN	rs62485870-T	0.81	9E-6		0.55	[0.31-0.79] unit increase	Illumina [5833901] (imputed)	N
1376	chr7	103696538	103696539	rs756747	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter alcoholic beverage consumption	336,448 European ancestry individuals	39,924 European ancestry individuals	7q22.1	RELN	rs756747-G	0.5222	3E-9		0.0061	[0.0041-0.0081] unit increase	Affymetrix [~ 7740000] (imputed)	N
1376	chr7	103696538	103696539	rs756747	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Alcohol consumption (drinks per week)	414,343 European ancestry individuals	NA	7q22.1	ORC5	rs756747-T	0.4803	4E-9		0.013182213	[0.0088-0.0176] unit decrease	Affymetrix [11514936] (imputed)	N
1376	chr7	103725122	103725123	rs7810885	31557306	Wang RS	2019-09-26	Clin Pharmacol Ther	Pharmacogenomics and Placebo Response in a Randomized Clinical Trial in Asthma.	Response to placebo treatment in childhood asthma (FVC change)	250 European ancestry children	NA	7q22.1	RELN	rs7810885-G	0.05	3E-6		10.96	NR unit increase	Illumina [NR] (imputed)	N
1376	chr7	103728045	103728046	rs13236743	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	7q22.1		rs13236743-C	0.47	1E-9		6.11	z score increase	Affymetrix [9061022] (imputed)	N
1376	chr7	103728045	103728046	rs13236743	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	7q22.1	NR	rs13236743-C	0.4897	1E-9				NR [9056863] (imputed)	N
1376	chr7	103733263	103733264	rs10276148	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	7q22.1	NR	rs10276148-A	0.4912	8E-12				NR [9056863] (imputed)	N
1376	chr7	103752742	103752743	rs194827	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	7q22.1	NR	rs194827-?	NR	3E-9	(left entorhinal)			NR [9227495] (imputed)	N
1376	chr7	103754332	103754333	rs10953405	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Sucrose liking	686 European ancestry twins	NA	7q22.1	ORC5	rs10953405-A	0.87	3E-6		0.67	[0.4-0.94] unit increase	Illumina [5833901] (imputed)	N
1376	chr7	103762312	103762313	rs194834	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	7q22.1	NR	rs194834-?	NR	4E-10	(left entorhinal)			NR [9227495] (imputed)	N
1377	chr7	103812170	103812171	rs2299409	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Problematic alcohol use (MTAG)	972,915 European ancestry individuals	NA	7q22.1	NR	rs2299409-A	0.5342	6E-11		0.013525672	[0.0095-0.0176] unit decrease	Affymetrix [10613246] (imputed)	N
1377	chr7	103812170	103812171	rs2299409	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol consumption (drinks per week) (MTAG)	972,915 European ancestry individuals	NA	7q22.1	NR	rs2299409-A	0.493	3E-11		0.011443348	[0.0081-0.0148] unit decrease	Affymetrix [NR] (imputed)	N
1377	chr7	103812170	103812171	rs2299409	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	7q22.1	NR	rs2299409-A	0.529	2E-9		0.00786772	[0.0053-0.0105] unit decrease	NR [~ 9732723] (imputed)	N
1377	chr7	103838119	103838120	rs13238183	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	7q22.1		rs13238183-A	0.48	3E-22		9.69	z score increase	Affymetrix [9061022] (imputed)	N
1377	chr7	103840114	103840115	rs35034355	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week)	up to 941,280 European ancestry individuals	NA	7q22.1	NR	rs35034355-A	0.521	3E-8		0.008096817	[0.0052-0.011] unit decrease	NR [~ 10000000] (imputed)	N
1377	chr7	103850530	103850531	rs28758523	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	7q22.2		rs28758523-G	0.49	5E-10		6.22	z score increase	Affymetrix [9061022] (imputed)	N
1377	chr7	103937464	103937466	rs796637321	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7q22.2	NR	rs796637321-C	0.0331	2E-8	(RIDA)	0.7115	NR unit decrease	Illumina [1671387] (imputed)	N
1378	chr7	103952870	103952871	rs35391537	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Chronic lymphocytic leukemia	764 White British ancestry cases, 272,079 White British ancestry controls	NA	7q22.2		rs35391537-?	NR	7E-6		1.74695	[1.5-1.99]	NR [663083]	N
1378	chr7	103972083	103972084	rs2188490	33491795	Timmer T	2021-01-25	Vox Sang	Genetic determinants of ferritin, haemoglobin levels and haemoglobin trajectories: results from Donor InSight.	Ferritin levels	2,649 European ancestry individuals	NA	7q22.2	LHFPL3	rs2188490-C	0.111	4E-7		0.17	[0.24-0.11] unit decrease	Affymetrix [7435577] (imputed)	N
1378	chr7	104006509	104006510	rs61585310	30697902	Hernandez-Pacheco N	2019-01-29	Clin Exp Allergy	Genome-wide association study of inhaled corticosteroid response in admixed children with asthma.	Asthma exacerbations in inhaled corticosteroid treatment	854 Hispanic/Latino cases, 493 African American cases	1,697 European ancestry cases	7q22.2	LHFPL3	rs61585310-T	0.204	3E-6	(Hispanic/Latino+AfricanAmerican)	1.64	[1.33-2.04]	Affymetrix [~ 8700000] (imputed)	N
1378	chr7	104020246	104020247	rs12112236	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		LHFPL3	rs12112236-?	NR	2E-8	(female)	0.517735	[NR] unit increase	Affymetrix [NR] (imputed)	N
1378	chr7	104061350	104061351	rs6980251	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	7q22.2	LHFPL3	rs6980251-C	0.0830211637190786	2E-6		0.0046345	[NR] unit increase	Affymetrix [> 30000000] (imputed)	N
1379	chr7	104083701	104083702	rs36109662	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	7q22.2	NR	rs36109662-G	NR	4E-6		1.0869565	[NR]	Illumina [7158791] (imputed)	N
1379	chr7	104189081	104189082	rs4730020	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	7q22.2		rs4730020-T	0.2697	1E-8		0.009	[0.0059-0.0121] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1380	chr7	104235689	104235690	rs143054558	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	7q22.2	NR	rs143054558-?	NR	6E-6		13.207	NR unit increase	Affymetrix [at least 600000] (imputed)	N
1380	chr7	104299192	104299193	rs113958263	30796134	Soderholm M	2019-02-22	Neurology	Genome-wide association meta-analysis of functional outcome after ischemic stroke.	3-month functional outcome in ischaemic stroke (modified Rankin score)	6,165 European and unknown ancestry individuals	NA	7q22.2	LHFPL3	rs113958263-C	0.86	3E-6		1.2658228	[1.17-1.36]	Affymetrix, Illumina [~ 8500000] (imputed)	N
1380	chr7	104301596	104301597	rs4265125	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	7q22.2	Intergenic	rs4265125-T	0.2723	3E-8	(MTAG)	0.0102	[0.0065-0.0139] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1380	chr7	104301596	104301597	rs4265125	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	7q22.2	Intergenic	rs4265125-T	0.2706	8E-10	(MTAG)	0.0091	[0.0062-0.012] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1380	chr7	104311415	104311416	rs190116644	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	7q22.2	NR	rs190116644-?	NR	7E-6		18.861	NR unit increase	Affymetrix [at least 600000] (imputed)	N
1380	chr7	104322961	104322962	rs59474549	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Initial pursuit acceleration	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	7q22.2	LHFPL3	rs59474549-T	0.07097	1E-6	(African)			Illumina [4404269] (imputed)	N
1381	chr7	104379873	104379874	rs78457311	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	7q22.2	Intergenic	rs78457311-T	0.8687	4E-10	(MTAG)	0.0166	[0.012-0.022] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1381	chr7	104379873	104379874	rs78457311	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	7q22.2	Intergenic	rs78457311-T	0.8687	1E-8		0.0164	[0.011-0.022] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1381	chr7	104411871	104411872	rs17141483	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	7q22.2	Intergenic	rs17141483-C	0.2919	3E-13	(MTAG)	0.0132	[0.0097-0.0167] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1381	chr7	104417275	104417276	rs12669727	26806518	Hou L	2016-01-22	Lancet	Genetic variants associated with response to lithium treatment in bipolar disorder: a genome-wide association study.	Response to lithium treatment in bipolar disorder (dichotomous phenotype)	659 European ancestry responders, 1,684 European ancestry non-responders	NA	7q22.2	LHFPL3	rs12669727-T	0.22	4E-7		1.51	[1.29-1.77]	Affymetrix, Illumina [> 6000000] (imputed)	N
1381	chr7	104420059	104420060	rs4460308	24564958	St Pourcain B	2014-02-24	Mol Autism	Variability in the common genetic architecture of social-communication spectrum phenotypes during childhood and adolescence.	Social communication problems	Up to 5,628 European ancestry individuals	NA	7q22.2	LHFPL3	rs4460308-C	0.36	6E-6	(Age 8)	0.11	[0.051-0.169] unit increase	Illumina [2293137] (imputed)	N
1381	chr7	104423403	104423404	rs140513734	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	7q22.2	NR	rs140513734-?	NR	2E-6		0.0081053	[0.0048-0.0114] unit decrease	Affymetrix [805426] (imputed)	N
1381	chr7	104430888	104430889	rs2470966	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	7q22.2		rs2470966-C	0.6998	2E-11		0.0103	[0.0074-0.0132] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1381	chr7	104430888	104430889	rs2470966	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	7q22.2	Intergenic	rs2470966-C	0.6998	3E-13	(MTAG)	0.0104	[0.0077-0.0131] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1381	chr7	104433863	104433864	rs79464300	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	7q22.2	LHFPL3-AS1, LHFPL3	rs79464300-A	0.9894	4E-6		0.1627	[0.093-0.232] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1381	chr7	104435212	104435213	rs2470961	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	7q22.2	Intergenic	rs2470961-G	0.4424	2E-8		0.0128	[0.0083-0.0173] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1381	chr7	104448563	104448564	rs55846951	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Endometrial cancer	2,037 European ancestry cases, 410,350 European ancestry controls	NA	7q22.2		rs55846951-G	0.016533	6E-7		1.6702857	NR	Affymetrix [7846216] (imputed)	N
1381	chr7	104461486	104461487	rs2465065	22179738	Lai HM	2011-12-16	Rheumatology (Oxford)	Gout and type 2 diabetes have a mutual inter-dependent effect on genetic risk factors and higher incidences.	Gout	20 Han Chinese ancestry male gout cases, 42 Han Chinese ancestry male controls	NA	7q22.2	LHFPL3	rs2465065-?		1E-7				Illumina [479403]	N
1382	chr7	104466963	104466964	rs4073894	25201988	Rietveld CA	2014-09-08	Proc Natl Acad Sci U S A	Common genetic variants associated with cognitive performance identified using the proxy-phenotype method.	Educational attainment	106,736 European ancestry individuals	NA	7q22.2	intergenic	rs4073894-A	0.202	9E-6		0.024	[NR] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1382	chr7	104466963	104466964	rs4073894	23722424	Rietveld CA	2013-05-30	Science	GWAS of 126,559 individuals identifies genetic variants associated with educational attainment.	Educational attainment	up to 101,069 European ancestry individuals	25,490 European ancestry individuals	7q22.2	LHFPL3	rs4073894-A	0.207	6E-6	(College)	1.062	[NR]	Affymetrix, Illumina, Perlegen [up to 2309290] (imputed)	N
1382	chr7	104478985	104478986	rs10258340	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	7q22.2		rs10258340-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1382	chr7	104500067	104500068	rs10085831	29970889	Day FR	2018-07-03	Nat Commun	Elucidating the genetic basis of social interaction and isolation.	Regular attendance at a religious group	66,259 European ancestry cases, 386,043 European ancestry controls	NA	7q22.2	LHFPL3, LOC645591, LOC723809, LOC100216546, LOC100216545, MLL5, SRPK2	rs10085831-A	0.781139	8E-10		0.00542524	[0.0037-0.0072] unit decrease	NR [NR] (imputed)	N
1382	chr7	104503812	104503813	rs10953454	21552555	Wang K	2011-04-28	PLoS One	A genome-wide association study on obesity and obesity-related traits.	Obesity	520 European ancestry cases, 540 European ancestry controls	1,196 European ancestry individuals	7q22.2	LHFPL3	rs10953454-?	NR	7E-7	(HIP)			Illumina [~ 550000]	N
1382	chr7	104516273	104516274	rs73184014	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	7q22.2	NR	rs73184014-G	0.2094	1E-8		0.0298	[0.02-0.04] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1382	chr7	104520527	104520528	rs1075228	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	7q22.2		rs1075228-A	0.4257	2E-8		0.0081	[0.0054-0.0108] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1382	chr7	104520527	104520528	rs1075228	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	7q22.2	Intergenic	rs1075228-A	0.4299	2E-9	(MTAG)	0.0139	[0.0094-0.0184] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1382	chr7	104559633	104559634	rs62485458	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Cognitive traits (MTAG)	331,679 British ancestry individuals	NA	7q22.3		rs62485458-?	NR	5E-8				NR [7857346] (imputed)	N
1382	chr7	104567876	104567877	rs11762333	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7q22.3	NR	rs11762333-A	0.0122	2E-8	(DPP7)	0.1533	NR unit increase	Illumina [1671387] (imputed)	N
1382	chr7	104568248	104568249	rs7809066	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	7q22.3	RP11-325F22.5	rs7809066-A	NR	3E-8		5.554	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1382	chr7	104576669	104576670	rs66905828	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	7q22.3	Intergenic	rs66905828-A	0.6949	1E-19	(MTAG)	0.0176	[0.014-0.021] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1382	chr7	104576669	104576670	rs66905828	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	7q22.3	Intergenic	rs66905828-A	0.6949	2E-15		0.0168	[0.013-0.021] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1382	chr7	104576669	104576670	rs66905828	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	7q22.3	Intergenic	rs66905828-A	0.6953	4E-23	(MTAG)	0.0178	[0.014-0.021] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1382	chr7	104594252	104594253	rs2252074	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	7q22.3		rs2252074-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1383	chr7	104596247	104596248	rs56016333	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	7q22.3	Intergenic	rs56016333-T	0.6477	4E-13		0.0172	[0.012-0.022] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1383	chr7	104596247	104596248	rs56016333	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	7q22.3	ENSG00000237513, LINC01004	rs56016333-T	NR	2E-8		5.585	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1383	chr7	104605529	104605530	rs7776707	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	67,764 individuals	NA	7q22.3	NR	rs7776707-?		4E-9				NR [8377093]	N
1383	chr7	104605529	104605530	rs7776707	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	7q22.3	LINC01004	rs7776707-?	NR	1E-8		0.011871369	[0.0078-0.0159] unit decrease	NR [7306098]	N
1383	chr7	104606002	104606003	rs10266287	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	7q22.3	KMT2E	rs10266287-T	0.345	2E-8		0.007	[0.0046-0.0094] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
1383	chr7	104608591	104608592	rs34180096	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	7q22.3	LINC01004	rs34180096-T	NR	2E-9		6.006	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1383	chr7	104613790	104613791	rs1011468	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	7q22.3	NR	rs1011468-A	0.475748	1E-12		0.013795	[0.01-0.0176] unit decrease	Affymetrix [16668957] (imputed)	N
1383	chr7	104618317	104618318	rs6966728	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	417,580 European ancestry individuals	NA	7q22.3		rs6966728-C	0.537368	5E-8		0.011	[0.0071-0.0149] unit decrease	NR [7250403] (imputed)	N
1383	chr7	104627903	104627904	rs62486616	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-6 levels	8,189 Finnish ancestry individuals	NA	7q22.3	NR	rs62486616-G	NR	9E-6		0.2878	[0.16-0.42] SD units decrease	NR [10700000] (imputed)	N
1383	chr7	104653264	104653265	rs2192932	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	65,967 individuals	NA	7q22.3	NR	rs2192932-?		3E-8				NR [8377093]	N
1383	chr7	104662861	104662862	rs4727618	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	7q22.3	KMT2E	rs4727618-A	0.4767	3E-10		0.012751501	[0.0088-0.0167] unit decrease	Affymetrix [up to 18485882] (imputed)	N
1383	chr7	104662861	104662862	rs4727618	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income	286,301 British ancestry individuals	NA	7q22.3	KMT2E	rs4727618-A	NR	2E-8		0.011449	[0.0075-0.0154] unit decrease	Affymetrix [18485882] (imputed)	N
1383	chr7	104667333	104667334	rs9655780	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	7q22.3		rs9655780-A	0.8287	4E-16		0.0153	[0.012-0.019] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1383	chr7	104667333	104667334	rs9655780	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	7q22.3	Intergenic	rs9655780-A	0.8287	2E-20	(MTAG)	0.0162	[0.013-0.02] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1383	chr7	104667333	104667334	rs9655780	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	7q22.3	Intergenic	rs9655780-A	0.8291	9E-14	(MTAG)	0.0227	[0.017-0.029] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1383	chr7	104667333	104667334	rs9655780	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	7q22.3	KMT2E	rs9655780-A	NR	3E-9		0.023371018	[0.016-0.031] unit decrease	Affymetrix [NR]	N
1383	chr7	104704313	104704314	rs7805792	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	7q22.3	KMT2E	rs7805792-C	0.114742	1E-9		0.021059658	[0.014-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1383	chr7	104704313	104704314	rs7805792	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q22.3	NR	rs7805792-C	0.231881	4E-10				Affymetrix, Illumina [24649327] (imputed)	N
1383	chr7	104704313	104704314	rs7805792	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	7q22.3	NR	rs7805792-C	0.117242	5E-11		0.018853	[0.013-0.024] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
1383	chr7	104704313	104704314	rs7805792	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	7q22.3	NR	rs7805792-C	0.116537	7E-11		0.01957	[0.014-0.025] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
1384	chr7	104744218	104744219	rs111931861	30804558	Grove J	2019-02-25	Nat Genet	Identification of common genetic risk variants for autism spectrum disorder.	Autism spectrum disorder	18,381 European ancestry cases, 27,969 European ancestry controls	2,119 European ancestry cases, 142,379 European ancestry controls	7q22.3	KMT2E, SRPK2	rs111931861-G	0.034	3E-8		1.242236	[NR]	Illumina [9112387] (imputed)	N
1384	chr7	104756325	104756326	rs1142	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7q22.3		rs1142-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1384	chr7	104756325	104756326	rs1142	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	7q22.3	NA	rs1142-T	0.3344	2E-17		0.0149	[0.011-0.018] unit increase	NR [~ 27400000] (imputed)	N
1384	chr7	104756325	104756326	rs1142	26691988	Fritsche LG	2015-12-21	Nat Genet	A large genome-wide association study of age-related macular degeneration highlights contributions of rare and common variants.	Advanced age-related macular degeneration	16,144 European ancestry cases, 17,832 European ancestry controls	473 Asian ancestry cases, 1,099 Asian ancestry controls, 52 African ancestry cases, 361 African ancestry cases, 254 other non-European ancestry cases, 694 other non-European ancestry controls	7q22.3	KMT2E, SRPK2	rs1142-?	NR	1E-9	(EA)	1.11		Illumina [12023830] (imputed)	N
1384	chr7	104756354	104756355	rs1144	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	7q22.3	NR	rs1144-C	0.34	2E-15		0.015	[0.011-0.019] unit increase	Affymetrix [2446094] (imputed)	N
1384	chr7	104756354	104756355	rs1144	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	7q22.3	NR	rs1144-C	0.34	5E-8				Affymetrix [2446094] (imputed)	N
1384	chr7	104756354	104756355	rs1144	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	7q22.3	SRPK2	rs1144-T	NR	2E-9		5.962	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1384	chr7	104756354	104756355	rs1144	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	7q22.3	SRPK2	rs1144-T	0.6579	5E-6		0.0165	[0.0094-0.0236] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1384	chr7	104756354	104756355	rs1144	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	7q22.3	SRPK2	rs1144-C	0.34	3E-8		0.019	unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1384	chr7	104758249	104758250	rs6968355	23049088	Meng W	2012-10-09	Invest Ophthalmol Vis Sci	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		7q22.3	SRPK2	rs6968355-?	0.174	2E-7			[NR]	Affymetrix, Illumina [152234]	N
1384	chr7	104768618	104768619	rs1006365	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking cessation (MTAG)	up to 820,192 European ancestry individuals	NA	7q22.3	NR	rs1006365-T	0.525	1E-8		0.00876314	[0.0057-0.0118] unit decrease	NR [9732723] (imputed)	N
1384	chr7	104788260	104788261	rs68004394	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Melanoma	6,777 European ancestry cases, 410,350 European ancestry controls	NA	7q22.3		rs68004394-C	0.531354	8E-8		1.0996262	NR	Affymetrix [7846216] (imputed)	N
1384	chr7	104797334	104797335	rs7787448	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	7q22.3		rs7787448-?	NR	1E-7				NR [~ 8900000] (imputed)	N
1384	chr7	104817055	104817056	rs10607748	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	7q22.3		rs10607748-A	NR	1E-9		0.0207	[0.014-0.027] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
1384	chr7	104827009	104827010	rs73186011	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Subjective well-being	298,420 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	7q22.3	NR	rs73186011-A	0.0332	9E-6		0.044919994	[0.025-0.065] unit increase	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
1384	chr7	104852653	104852654	rs41563	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	7q22.3	KMT2E, KMT2E-AS1, LINC01004, SRPK2	rs41563-A		5E-11		1.07	[1.05-1.09]	Affymetrix, Illumina [NR]	N
1384	chr7	104855870	104855871	rs4730073	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	7q22.3	NR	rs4730073-?	NR	6E-13				Affymetrix [~ 8270000] (imputed)	N
1384	chr7	104855870	104855871	rs4730073	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	7q22.3	NR	rs4730073-?	NR	4E-14				Affymetrix [~ 8270000] (imputed)	N
1384	chr7	104855870	104855871	rs4730073	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	7q22.3		rs4730073-?	NR	3E-14				NR [~ 8900000] (imputed)	N
1385	chr7	104870447	104870448	rs7794036	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Sunburns	approximately 344,000 European ancestry individuals	NA	7q22.3		rs7794036-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1385	chr7	104870587	104870588	rs78785751	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	7q22.3	MLL5, SRPK2	rs78785751-C	0.028000000000000025	4E-6		1.1793983		NR [9372253] (imputed)	N
1385	chr7	104878704	104878705	rs73186025	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	7q22.3	NA	rs73186025-T		6E-18		0.0157577	[0.012-0.019] unit decrease	Illumina [13288253] (imputed)	N
1385	chr7	104893564	104893565	rs10257135	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	315,284 European ancestry male individuals	NA	7q22.3	NR	rs10257135-T	0.8452	5E-15		0.0182	[0.014-0.023] unit decrease	NR [~ 27400000] (imputed)	N
1385	chr7	104898715	104898716	rs6968335	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs anorexia nervosa (ordinary least squares (OLS))	40,675 schizophrenia cases, 16,992 anorexia nervosa cases	NA	7q22.3		rs6968335-?	NR	4E-9		0.0194	NR unit decrease	NR [4425810] (imputed)	N
1385	chr7	104903658	104903659	rs4580973	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	7q22.3	KMT2E, KMT2E-AS1, LHFPL3, LHFPL3-AS2, LINC01004, SRPK2	rs4580973-A		3E-10		1.06	[1.04-1.09]	Affymetrix, Illumina [NR]	N
1385	chr7	104927585	104927586	rs7789569	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Schizophrenia (MTAG)	940,613 European ancestry individuals	NA			rs7789569-?	NR	3E-9				NR [2625067]	N
1385	chr7	104927585	104927586	rs7789569	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Schizophrenia (MTAG)	at least 33,640 European ancestry cases, at least 43,456 European ancestry controls	NA		NR	rs7789569-T	0.3559	7E-9		0.06609219	[0.044-0.088] unit increase	NR [NR]	N
1385	chr7	104927585	104927586	rs7789569	29483656	Pardinas AF	2018-02-26	Nat Genet	Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.	Schizophrenia	40,675 European ancestry cases, 64,643 European ancestry controls	1,651 European ancestry cases, 4,111 cases, 142,717 European ancestry controls, 11,507 controls		KMT2E, KMT2E-AS1, LINC01004, SRPK2	rs7789569-?	NR	7E-11		1.067	[1.05-1.09]	Illumina [8000000] (imputed)	N
1385	chr7	104929063	104929064	rs6466055	31268507	Periyasamy S	2019-07-03	JAMA Psychiatry	Association of Schizophrenia Risk With Disordered Niacin Metabolism in an Indian Genome-wide Association Study.	Schizophrenia	816 Indian ancestry cases, 900 Indian ancestry controls, 505 Indian ancestry cases and 871 Indian ancestry controls from 405 families, up to 36,989 European and unknown ancestry cases, up to 113,075 European and unknown ancestry controls	NA	7q22.3	NR	rs6466055-?	NR	1E-9				Illumina [up to 5582932] (imputed)	N
1385	chr7	104929063	104929064	rs6466055	30804558	Grove J	2019-02-25	Nat Genet	Identification of common genetic risk variants for autism spectrum disorder.	Autism and schizophrenia (MTAG)	18,381 European ancestry autism cases, 27,969 European ancestry controls, 34,129 schizophrenia cases, 45,512 controls	NA	7q22.3		rs6466055-A	0.345	2E-6		0.046	unit increase	Illumina [NR] (imputed)	N
1385	chr7	104929063	104929064	rs6466055	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	7q22.3	NR	rs6466055-A	NR	1E-9		1.07	[NR]	Illumina [7158791] (imputed)	N
1385	chr7	104929063	104929064	rs6466055	25056061	Ripke S	2014-07-22	Nature	Biological insights from 108 schizophrenia-associated genetic loci.	Schizophrenia	32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	1,513 European ancestry cases, 66,236 European ancestry controls	7q22.3	MLL5, PUS7, SRPK2	rs6466055-A	0.332	1E-9		1.068	[1.046-1.091]	Affymetrix, Illumina [9005918] (imputed)	N
1385	chr7	104930249	104930250	rs2057884	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	7q22.3	SRPK2	rs2057884-?		4E-10				NR [6786993] (imputed)	N
1385	chr7	104930249	104930250	rs2057884	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	7q22.3	NR	rs2057884-?	NR	1E-11		1.06109	[1.04-1.08]	Affymetrix, Illumina [12447948] (imputed)	N
1385	chr7	104930249	104930250	rs2057884	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	7q22.3	SRPK2	rs2057884-T	NR	3E-12		1.07	[1.05-1.09]	Illumina [6627481] (imputed)	N
1385	chr7	104930249	104930250	rs2057884	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	7q22.3	SRPK2	rs2057884-T	NR	2E-9	(EA)	1.0709	[1.05-1.09]	Illumina [6627481] (imputed)	N
1385	chr7	104930249	104930250	rs2057884	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	316,772 European ancestry male individuals	NA	7q22.3	NR	rs2057884-T	0.345	4E-15		0.0146	[0.011-0.018] unit increase	NR [~ 27400000] (imputed)	N
1385	chr7	104930249	104930250	rs2057884	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	7q22.3	MLL5, SRPK2	rs2057884-T	NR	2E-12		1.069	[1.05-1.09]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1386	chr7	104994720	104994721	rs55658584	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	7q22.3	SRPK2	rs55658584-A	NR	7E-9		5.783	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1386	chr7	105015175	105015176	rs142226001	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7q22.3	NR	rs142226001-A	0.0122	2E-8	(DPP7)	0.1533	NR unit increase	Illumina [1671387] (imputed)	N
1386	chr7	105035388	105035389	rs7809464	32339537	Roberts V	2020-04-24	J Invest Dermatol	Genome wide association study identifies genetic associations with perceived age.	Youthful appearance (self-reported)	423,992 European ancestry individuals	NA	7q22.3	SRPK2	rs7809464-G	0.463053	8E-11		0.9720134	NR	Affymetrix [~ 9600000] (imputed)	N
1386	chr7	105043228	105043229	rs11764361	34002096	Mullins N	2021-05-17	Nat Genet	Genome-wide association study of more than 40,000 bipolar disorder cases provides new insights into the underlying biology.	Bipolar disorder	41,917 European ancestry cases, 371,549 European ancestry controls	NA	7q22.3	SRPK2	rs11764361-A	0.668	3E-9		1.06343	[1.04-1.08]	Affymetrix, Illumina [7549318] (imputed)	N
1386	chr7	105048157	105048158	rs73188321	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	7q22.3	SRPK2, PUS7	rs73188321-C	0.667	1E-9		1.0811278		NR [9372253] (imputed)	N
1386	chr7	105063371	105063372	rs12535854	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	7q22.3	NR	rs12535854-C	0.345924	5E-9		0.03847778	[0.026-0.051] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1386	chr7	105063371	105063372	rs12535854	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	7q22.3	Intergenic	rs12535854-C	0.3311	6E-10	(MTAG)	0.0151	[0.01-0.02] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1386	chr7	105063371	105063372	rs12535854	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	7q22.3	Intergenic	rs12535854-C	0.3311	4E-9		0.0178	[0.012-0.024] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
1386	chr7	105063371	105063372	rs12535854	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	7q22.3	NR	rs12535854-C	NR	7E-10		6.172	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1386	chr7	105077184	105077185	rs62484733	30196971	Bray MJ	2018-09-01	Fertil Steril	Transethnic and race-stratified genome-wide association study of fibroid characteristics in African American and European American women.	Uterine fibroid size (maximum dimension)	1,301 African American or European ancestry female individuals	NA	7q22.3	SRPK2, PUS7	rs62484733-A	0.1	4E-7	(AA)	0.14	[0.09-0.19] unit increase	Affymetrix [up to 9596033] (imputed)	N
1386	chr7	105084670	105084671	rs13307225	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	7q22.3	PUS7	rs13307225-G	0.107011	5E-11		0.0217849	[0.015-0.028] unit decrease	NR [16516521] (imputed)	N
1387	chr7	105141151	105141152	rs6957263	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	Systemic lupus erythematosus	1,639 East Asian ancestry cases, 2,410 East Asian ancestry controls	NA			rs6957263-C	NR	9E-6		0.2341	[0.13-0.34] unit decrease	Illumina [NR] (imputed)	N
1387	chr7	105166852	105166853	rs6963495	24322204	Winham SJ	2013-12-10	Mol Psychiatry	Genome-wide association study of bipolar disorder accounting for effect of body mass index identifies a new risk allele in TCF7L2.	Bipolar disorder (body mass index interaction)	388 European ancestry cases, 1,020 European ancestry controls	NA	7q22.3	NR	rs6963495-?	NR	5E-6				NR [up to 8466825] (imputed)	N
1387	chr7	105222450	105222451	rs116979167	24322204	Winham SJ	2013-12-10	Mol Psychiatry	Genome-wide association study of bipolar disorder accounting for effect of body mass index identifies a new risk allele in TCF7L2.	Bipolar disorder (body mass index interaction)	388 European ancestry cases, 1,020 European ancestry controls	NA	7q22.3	NR	rs116979167-?	NR	5E-6				NR [up to 8466825] (imputed)	N
1387	chr7	105243448	105243449	rs117854110	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque score in type 2 diabetes	691 African American individuals	205 African American individuals	7q22.3	intergenic	rs117854110-?	NR	5E-7		2.739	[1.44-4.04] unit decrease	Illumina [at least 13000000] (imputed)	N
1388	chr7	105272675	105272676	rs79698955	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental extreme longevity (95 years and older)	1,339 middle-aged British cases, 40,934 middle-aged British controls	NA	7q22.3	NR	rs79698955-?	NR	8E-6		0.01559	[0.0087-0.0224] unit decrease	Affymetrix [9658292] (imputed)	N
1388	chr7	105273719	105273720	rs10242311	23064961	Shaffer JR	2012-10-11	J Dent Res	GWAS of dental caries patterns in the permanent dentition.	Dental caries	920 European ancestry individuals	NA	7q22.3	ATXN7L1	rs10242311-?	NR	6E-7	(DMFS5mand)			Illumina [518997]	N
1388	chr7	105277792	105277793	rs17345800	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	7q22.3		rs17345800-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1388	chr7	105281187	105281188	rs11983798	22881374	Cummings AC	2012-09-01	Ann Hum Genet	Genome-wide association and linkage study in the Amish detects a novel candidate late-onset Alzheimer disease gene.	Alzheimer's disease (late onset)	109 Amish cases, 689 Amish controls	NA	7q22.3	ATXN7L1	rs11983798-T	0.08	1E-6				Affymetrix [614963]	N
1388	chr7	105284678	105284679	rs17150689	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 14, intercanthal width)	2,187 European ancestry individuals	NA	7q22.3	NR	rs17150689-C	0.0149	9E-7		0.6177	[0.37-0.86] unit increase	Illumina [10677593] (imputed)	N
1388	chr7	105310592	105310593	rs12540205	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	7q22.3	NR	rs12540205-C	NR	5E-6		1.0526316	[NR]	Illumina [7158791] (imputed)	N
1388	chr7	105314014	105314015	rs511220	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	7q22.3	NR	rs511220-A	0.4081	1E-8		0.001341	[0.00087-0.00182] unit increase	Affymetrix [NR] (imputed)	N
1388	chr7	105314325	105314326	rs513973	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	7q22.3	ATXN7L1	rs513973-T	0.22993	1E-11		0.018464295	[0.013-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1388	chr7	105314325	105314326	rs513973	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	7q22.3	ATXN7L1	rs513973-T	0.229949	7E-11		0.017786112	[0.012-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1388	chr7	105314325	105314326	rs513973	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q22.3	NR	rs513973-T	0.265931	7E-10				Affymetrix, Illumina [19872809] (imputed)	N
1388	chr7	105314325	105314326	rs513973	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	7q22.3	NR	rs513973-T	0.231849	4E-12		0.017021	[0.012-0.022] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
1388	chr7	105314325	105314326	rs513973	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	7q22.3		rs513973-?	NR	3E-11				NR [~ 8900000] (imputed)	N
1388	chr7	105331818	105331819	rs10272208	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	7q22.3	Intergenic	rs10272208-?		5E-7		1.0309278	[1.02-1.05]	Illumina [7645193] (imputed)	N
1388	chr7	105331818	105331819	rs10272208	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	7q22.3	Intergenic	rs10272208-?		2E-6		1.3333333	[1.19-1.52]	Illumina [7645193] (imputed)	N
1388	chr7	105334442	105334443	rs62487041	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	7q22.3	NR	rs62487041-?	NR	6E-10				Affymetrix [~ 8270000] (imputed)	N
1388	chr7	105334442	105334443	rs62487041	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	7q22.3		rs62487041-?	NR	5E-10				NR [~ 8900000] (imputed)	N
1388	chr7	105335697	105335698	rs112386665	34659352	Bensenor I	2021-09-29	Front Genet	Genome-Wide Association of Proprotein Convertase Subtilisin/Kexin Type 9 Plasma Levels in the ELSA-Brasil Study.	Plasma PCSK9 levels	96 Black ancestry individuals, 178 individuals, 480 White ancestry individuals, 39 Asian ancestry individuals, 17 indigenous ancestry individuals	NA	7q22.3		rs112386665-?	NR	8E-8				Affymetrix [11524071] (imputed)	N
1388	chr7	105341607	105341608	rs567003	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	7q22.3		rs567003-A	0.3538	2E-10		0.0094	[0.0065-0.0123] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1388	chr7	105341607	105341608	rs567003	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	7q22.3	Intergenic	rs567003-A	0.3538	4E-9	(MTAG)	0.0081	[0.0054-0.0108] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1388	chr7	105345946	105345947	rs17151401	29703844	van Zuydam NR	2018-04-27	Diabetes	A Genome-Wide Association Study of Diabetic Kidney Disease in Subjects With Type 2 Diabetes.	Chronic kidney disease in type 2 diabetes	3,094 European ancestry cases, 2,906 European ancestry controls	5,406 European ancestry cases, 8,744 European ancestry controls, 2,964 Asian cases, 3,323 Asian controls, 207 Chinese ancestry cases, 273 Chinese ancestry controls, 58 Indian ancestry cases, 107 Indian ancestry controls, 103 Malay ancestry cases, 56 Malay ancestry controls controls	7q22.3	NR	rs17151401-?		3E-6	(EA)	1.31	[1.12-1.53]	Affymetrix, Illumina [up to 9343778] (imputed)	N
1389	chr7	105416559	105416560	rs2529369	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	7q22.3		rs2529369-?	NR	5E-30				NR [~ 8900000] (imputed)	N
1389	chr7	105416559	105416560	rs2529369	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	7q22.3	ATXN7L1	rs2529369-?	NR	3E-14		1.0678056	NR	Affymetrix [9154080] (imputed)	N
1389	chr7	105494962	105494963	rs212417	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	7q22.3	ATXN7L1	rs212417-G	0.326201	7E-55		0.0303872	[0.027-0.034] unit increase	NR [13737936] (imputed)	N
1389	chr7	105494962	105494963	rs212417	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	7q22.3		rs212417-?	NR	4E-49				NR [~ 8900000] (imputed)	N
1389	chr7	105494962	105494963	rs212417	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	7q22.3		rs212417-?	NR	5E-48		0.030955	[0.027-0.035] unit increase	Affymetrix [20259828] (imputed)	N
1389	chr7	105494962	105494963	rs212417	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	7q22.3	ATXN7L1	rs212417-G	0.330026	5E-12	(women)	0.0325914	[0.023-0.042] unit increase	NR [17166351] (imputed)	N
1389	chr7	105494962	105494963	rs212417	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	7q22.3	ATXN7L1	rs212417-G	0.329499	1E-21		0.0337768	[0.027-0.041] unit increase	NR [17166351] (imputed)	N
1389	chr7	105494962	105494963	rs212417	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	7q22.3	ATXN7L1	rs212417-G	0.328896	2E-10	(men)	0.0335795	[0.023-0.044] unit increase	NR [17166351] (imputed)	N
1389	chr7	105496411	105496412	rs212420	29631575	Obeidat M	2018-04-10	Respir Res	The genetics of smoking in individuals with chronic obstructive pulmonary disease.	Smoking cessation in chronic obstructive pulmonary disease	717 European ancestry sustained quitter cases, 2,175 European ancestry continuous smoker cases	NA	7q22.3	ATXN7L1, CDHR3	rs212420-?	NR	2E-7		0.6	[0.38-0.82] unit decrease	Illumina [7807992] (imputed)	N
1389	chr7	105498966	105498967	rs62482803	30648747	Dudenkov TM	2019-01-16	Clin Pharmacol Ther	Anastrozole Aromatase Inhibitor Plasma Drug Concentration Genome-Wide Association Study: Functional Epistatic Interaction between SLC38A7 and ALPPL2.	Plasma anastrozole concentration in anastrozole-treated estrogen receptor positive breast cancer	634 European ancestry individuals, 40 African ancestry individuals, 13 Asian ancestry individuals	NA	7q22.3	NR	rs62482803-A	0.2132	3E-6		0.3058	[0.18-0.43] unit decrease	Illumina [~ 600000] (imputed)	N
1389	chr7	105502605	105502606	rs28562194	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	799 African American cases, 14,353 African American controls	NA	7q22.3	NR	rs28562194-?	NR	8E-7		0.4297	[0.26-0.6] unit increase	Affymetrix, Illumina [12923718] (imputed)	N
1390	chr7	105542579	105542580	rs13438712	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	7q22.3	ATXN7L1	rs13438712-G	0.2	8E-6	(Total energy expenditure )	0.03	[NR] kcal/d increase	Illumina [899892]	N
1390	chr7	105542579	105542580	rs13438712	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	7q22.3	ATXN7L1	rs13438712-G	0.2	2E-6	(Arm span )	0.03	[NR] cm increase	Illumina [899892]	N
1391	chr7	105658450	105658451	rs6967330	33328473	Ahluwalia TS	2020-12-16	Nat Commun	FUT2-ABO epistasis increases the risk of early childhood asthma and Streptococcus pneumoniae respiratory illnesses.	Childhood asthma with severe exacerbations	2,866 European ancestry cases,  65,415 European ancestry controls	NA	7q22.3	CDHR3	rs6967330-A	NR	2E-23		1.41	[1.32-1.51]	Illumina [up to 525976] (imputed)	N
1391	chr7	105658450	105658451	rs6967330	24241537	Bonnelykke K	2013-11-17	Nat Genet	A genome-wide association study identifies CDHR3 as a susceptibility locus for early childhood asthma with severe exacerbations.	Asthma (childhood onset)	1,173 European ancestry cases, 2,511 European ancestry controls	395 European ancestry cases, 2,663 European ancestry controls, 63 Turkish, Surinamese, Dutch Antillean, Moroccan, Cape Verdian and other ancestry cases, 917 Turkish, Surinamese, Dutch Antillean, Moroccan, Cape Verdian and other ancestry controls, 6,783 cases, 7,720 controls	7q22.3	CDHR3	rs6967330-A	0.19	3E-14		1.26	[1.18-1.33]	Affymetrix, Illumina [124514]	N
1391	chr7	105658459	105658460	rs73195662	30450575	Hojfeldt SG	2018-11-18	Br J Haematol	Genetic predisposition to PEG-asparaginase hypersensitivity in children treated according to NOPHO ALL2008.	PEG-asparaginase hypersensitivity without enzyme activity in childhood acute lymphoblastic leukaemia	59 European ancestry cases, 772 European ancestry controls	NA	7q22.3	CDHR3	rs73195662-G	NR	1E-6		3.52	[2.12-5.85]	Illumina [NR]	N
1391	chr7	105658926	105658927	rs114947103	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	7q22.3	NR	rs114947103-T	0.82577	6E-9		0.0157454	[0.01-0.021] unit decrease	NR [NR]	N
1391	chr7	105658926	105658927	rs114947103	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	7q22.3	CDHR3	rs114947103-C	0.18	5E-9		1.07	[1.06-1.08]	Illumina [at least 560000] (imputed)	N
1391	chr7	105658926	105658927	rs114947103	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	7q22.3	CDHR3	rs114947103-?	NR	5E-9		1.0695187	[1.05-1.09]	Illumina [13754664] (imputed)	N
1391	chr7	105671266	105671267	rs10270308	20833655	Cha PC	2010-09-10	Hum Mol Genet	Genome-wide association study identifies genetic determinants of warfarin responsiveness for Japanese.	Warfarin maintenance dose	807 Japanese ancestry low dose individuals, 701 Japanese ancestry high dose individuals	444 Japanese ancestry individuals	7q22.3	NR	rs10270308-?	NR	6E-6				Illumina [485227]	N
1391	chr7	105676504	105676505	rs6959584	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Asthma	28,399 European ancestry cases, 128,843 European ancestry controls	NA	7q22.3	CDHR3	rs6959584-?	NR	2E-8		1.086	[1.055-1.117]	Illumina [13747813] (imputed)	N
1391	chr7	105700442	105700443	rs7780850	30801121	O'Donnell S	2019-02-25	Inflamm Bowel Dis	The Unsolved Link of Genetic Markers and Crohn's Disease Progression: A North American Cohort Experience.	Crohn's disease (indolent vs progressive)	562 European ancestry individuals with indolent disease, 701 European ancestry individuals with progressive disease	NA	7q22.3	NR	rs7780850-C	0.279322	7E-6				Illumina [5378266] (imputed)	N
1391	chr7	105706461	105706462	rs73414214	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	7q22.3	CDHR3	rs73414214-C	NR	6E-10		1.1282	NR	Affymetrix, Illumina [8278136] (imputed)	N
1391	chr7	105718742	105718743	rs6978679	30514930	Mukherjee S	2018-12-04	Mol Psychiatry	Genetic data and cognitively defined late-onset Alzheimer's disease subgroups.	Alzheimer's disease with no specific cognitive domain impairment	Up to 1,584 European ancestry cases, 3,447 European ancestry controls	NA	7q22.3	NR	rs6978679-A	0.73	2E-6		1.36	[1.24-1.48]	NR [up to 6398204] (imputed)	N
1393	chr7	105945825	105945826	rs2110381	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	7q22.3		rs2110381-T	NR	4E-9		0.0138	[0.0093-0.0183] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
1393	chr7	105945825	105945826	rs2110381	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	7q22.3	NR	rs2110381-T	NR	1E-9		0.0176	[0.012-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
1393	chr7	105945825	105945826	rs2110381	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	7q22.3	NR	rs2110381-T	NR	5E-10		0.0179	[0.012-0.024] unit increase	Affymetrix [9000000] (imputed)	N
1393	chr7	105994725	105994726	rs2519673	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Age at menopause	approximately 143,000 European ancestry individuals	NA	7q22.3		rs2519673-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1394	chr7	106050310	106050311	rs147307036	34506852	Chang X	2021-09-07	J Allergy Clin Immunol	A genome-wide association meta-analysis identifies new Eosinophilic esophagitis loci.	Eosinophilic esophagitis	542 European ancestry cases, 7,146 European ancestry controls	NA	7q22.3	NAMPT	rs147307036-A	0.0028	1E-8		8.04	[4.36-14.85]	Illumina [11310926] (imputed)	N
1394	chr7	106069068	106069069	rs10239650	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7q22.3	NR	rs10239650-G	0.02091	8E-9	(CES2)	0.2774	NR unit increase	Illumina [1671387] (imputed)	N
1394	chr7	106110798	106110799	rs9986860	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Grapefruit juice consumption	85,852 European ancestry individuals	39,924 European ancestry individuals	7q22.3	NAMPT	rs9986860-C	0.1303	9E-6		0.0022	[0.0012-0.0032] unit increase	Affymetrix [~ 7740000] (imputed)	N
1394	chr7	106136572	106136573	rs10237818	32141793	Garman L	2020-03-06	Ocul Immunol Inflamm	Genome-Wide Association Study of Ocular Sarcoidosis Confirms HLA Associations and Implicates Barrier Function and Autoimmunity in African Americans.	Ocular sarcoidosis	260 African American cases, 1,551 African American controls	NA	7q22.3	NR	rs10237818-T	NR	2E-6		2.12	[1.56-2.89]	Illumina [13976150] (imputed)	N
1395	chr7	106235347	106235348	rs76306613	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	7q22.3	CTB-111H14.1, CTB-30L5.1	rs76306613-T	NR	4E-8		0.0221118	[0.014-0.03] unit increase	Affymetrix [319769] (imputed)	N
1395	chr7	106235347	106235348	rs76306613	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	7q22.3	CTB-111H14.1, CTB-30L5.1	rs76306613-T	NR	3E-8		0.0225021	[0.015-0.03] unit increase	Affymetrix [319769] (imputed)	N
1395	chr7	106235347	106235348	rs76306613	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	7q22.3	NR	rs76306613-T	0.1401	8E-8		0.0154	[0.0097-0.0211] unit increase	NR [~ 27400000] (imputed)	N
1395	chr7	106248524	106248525	rs58426008	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	7q22.3	NR	rs58426008-?	NR	2E-8				Illumina [7760689] (imputed)	N
1395	chr7	106259028	106259029	rs17311264	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	7q22.3	NR	rs17311264-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
1395	chr7	106261334	106261335	rs62484471	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	7q22.3		rs62484471-A	0.772	8E-9				Affymetrix [10369434] (imputed)	N
1395	chr7	106271834	106271835	rs375468501	30787463	Escala-Garcia M	2019-02-21	Br J Cancer	Genome-wide association study of germline variants and breast cancer-specific mortality.	Breast cancer specific mortality in estrogen receptor positive breast cancer	4,116 European ancestry cases, 60,055 European ancestry controls	NA	7q22.3	NR	rs375468501-?	NR	3E-6		1.3377686	[1.18-1.51]	Affymetrix, Illumina [~ 10400000] (imputed)	N
1395	chr7	106272821	106272822	rs186638945	33106475	Li QS	2020-10-26	Transl Psychiatry	Genome-wide association studies of antidepressant class response and treatment-resistant depression.	Response to serotonin-norepinephrine reuptake inhibitors (responders vs non-responders)	4,030 European ancestry responders, 3,049 European ancestry non-responders	NA	7q22.3	NR	rs186638945-T	NR	3E-6		1.7936	NR	Illumina [at least 560000] (imputed)	N
1395	chr7	106289029	106289030	rs7789575	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	7q22.3	PIK3CG	rs7789575-?	NR	3E-6	(valine)	0.18397489	[0.11-0.26] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1395	chr7	106291117	106291118	rs17507636	30213928	Went M	2018-09-13	Nat Commun	Identification of multiple risk loci and regulatory mechanisms influencing susceptibility to multiple myeloma.	Multiple myeloma	8,197 European ancestry cases, 241,468 European ancestry controls	1,777 European ancestry cases, 6,088 European ancestry controls	7q22.3	NR	rs17507636-C	0.74	9E-9		1.12		Illumina [up to 10291845] (imputed)	N
1395	chr7	106291117	106291118	rs17507636	27363682	Mitchell JS	2016-07-01	Nat Commun	Genome-wide association study identifies multiple susceptibility loci for multiple myeloma.	Multiple myeloma	7,319 European ancestry cases, 234,385 European ancestry controls	2,547 European ancestry cases, 4,803 European ancestry controls	7q22.3	Intergenic	rs17507636-C	0.735	2E-7		1.11	[NR]	Illumina [at least 7182761] (imputed)	N
1396	chr7	106299791	106299792	rs2286149	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	7q22.3		rs2286149-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1396	chr7	106308674	106308675	rs12666334	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CCL5	5,366 Icelandic ancestry individuals	NA	7q22.3		rs12666334-T	0.4125	6E-18		0.161586	[0.12-0.2] unit increase	Illumina [7506463] (imputed)	N
1396	chr7	106314978	106314979	rs12535463	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	7q22.3	NR	rs12535463-C	0.584149	4E-1224		0.146903	[0.14-0.15] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
1396	chr7	106324611	106324612	rs342213	29066854	Lin BD	2017-11-01	J Hum Genet	2SNP heritability and effects of genetic variants for neutrophil-to-lymphocyte and platelet-to-lymphocyte ratio.	Platelet count	5,901 Dutch ancestry individuals	2,538 individuals	7q22.3	CCDC71L, PIK3CG	rs342213-?	NR	3E-10		6.981	[4.8-9.16] unit decrease	Affymetrix, Illumina, Perlegen [6010458] (imputed)	N
1396	chr7	106328133	106328134	rs342221	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Forns index in high alcohol intake	33,437 British ancestry individuals	NA	7q22.3		rs342221-?	0.4374	1E-12		0.003394	unit increase	NR [6200000] (imputed)	N
1396	chr7	106328133	106328134	rs342221	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Fibrosis-4 index in high alcohol intake	33,324 British ancestry individuals	NA	7q22.3		rs342221-?	0.4374	3E-13		0.008232	unit increase	NR [6200000] (imputed)	N
1396	chr7	106328133	106328134	rs342221	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Aspartate aminotransferase platelet ratio index in high alcohol intake	33,330 British ancestry individuals	NA	7q22.3		rs342221-?	0.4374	3E-8		0.007686	unit increase	NR [6200000] (imputed)	N
1396	chr7	106338463	106338464	rs386805	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Forns index in high alcohol intake	33,437 British ancestry individuals	NA	7q22.3		rs386805-?	0.4492	2E-11		0.003227	unit increase	NR [6200000] (imputed)	N
1396	chr7	106338463	106338464	rs386805	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Fibrosis-4 index in high alcohol intake	33,324 British ancestry individuals	NA	7q22.3		rs386805-?	0.4492	4E-14		0.008504	unit increase	NR [6200000] (imputed)	N
1396	chr7	106338463	106338464	rs386805	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Aspartate aminotransferase platelet ratio index in high alcohol intake	33,330 British ancestry individuals	NA	7q22.3		rs386805-?	0.4492	9E-8		0.007435	unit increase	NR [6200000] (imputed)	N
1396	chr7	106338988	106338989	rs342242	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NOG	5,366 Icelandic ancestry individuals	NA	7q22.3		rs342242-C	0.4453	3E-13		0.13714	[0.1-0.17] unit decrease	Illumina [7506463] (imputed)	N
1396	chr7	106338988	106338989	rs342242	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	7q22.3	CTB-111H14.1	rs342242-C	0.454314	1E-13		0.016462468	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1396	chr7	106338988	106338989	rs342242	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q22.3	NR	rs342242-C	0.392777	1E-20				Affymetrix, Illumina [24649327] (imputed)	N
1396	chr7	106338988	106338989	rs342242	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q22.3	NR	rs342242-C	0.413598	5E-14				Affymetrix, Illumina [23114412] (imputed)	N
1396	chr7	106338988	106338989	rs342242	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	7q22.3	NR	rs342242-C	0.453135	4E-16		0.015768	[0.012-0.02] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
1396	chr7	106356645	106356646	rs10274553	31194788	Read RW	2019-06-13	PLoS One	GWAS and PheWAS of red blood cell components in a Northern Nevadan cohort.	Mean platelet volume	Up to 53 African American individuals, 100 Asian ancestry individuals, 4,175 European ancestry individuals, 138 Hispanic or Latin American individuals, 30 Native American individuals, 11 Pacific Islander ancestry individuals, 168 unknown ancestry individuals	NA	7q22.3	ARHGEF3	rs10274553-C	0.4974	4E-9		0.1198	[0.081-0.159] fL decrease	Illumina [498916]	N
1396	chr7	106359215	106359216	rs342275	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein COCH	5,367 Icelandic ancestry individuals	NA	7q22.3		rs342275-T	0.4416	5E-18		0.163432	[0.13-0.2] unit increase	Illumina [7506463] (imputed)	N
1396	chr7	106359215	106359216	rs342275	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Platelet count	8,850 African American individuals, 18,949 Hispanic/Latino individuals, 541 Asian ancestry individuals, 603 Native American ancestry individuals, 385 individuals	NA	7q22.3	NR	rs342275-?	NR	3E-8		3.276993	[2.11-4.44] unit decrease	Illumina [30743395] (imputed)	N
1396	chr7	106359215	106359216	rs342275	22139419	Gieger C	2011-11-30	Nature	New gene functions in megakaryopoiesis and platelet formation.	Platelet count	38,891 European ancestry individuals, 1,661 Val Borbera (founder/genetic isolate) individuals, 521 Carlantino (founder/genetic isolate) individuals, 1,198 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,213 South Tyrolean (founder/genetic isolate) individuals, 890 Sorbian (founder/genetic isolate) individuals, 4,292 Sardinian (founder/genetic isolate) individuals	Up to 16,949 European ancestry individuals, 854 Cliento (founder/genetic isolate) individuals, 1,035 Talana (founder/genetic isolate) individuals	7q22.3	FLJ36031, PIK3CG	rs342275-C	NR	6E-25		3.742	[3.03-4.45] 10^9/l increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1396	chr7	106364598	106364599	rs342286	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Mean platelet volume	27,236 European ancestry individuals	NA	7q22.3		rs342286-A	0.4318	2E-9		0.0934	[0.063-0.124] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1396	chr7	106365366	106365367	rs342287	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Melusin levels	21,758 European ancestry individuals	9,173 individuals	7q22.3		rs342287-T	0.65	2E-15		0.1294	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1396	chr7	106367603	106367604	rs342290	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CEL	5,360 Icelandic ancestry individuals	NA	7q22.3		rs342290-C	0.4423	1E-19		0.169942	[0.13-0.21] unit increase	Illumina [7506463] (imputed)	N
1396	chr7	106367603	106367604	rs342290	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	7q22.3		rs342290-C	NR	4E-14		0.0159	[0.012-0.02] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1396	chr7	106367603	106367604	rs342290	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	7q22.3		rs342290-C	NR	3E-13		0.0161	[0.012-0.02] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
1396	chr7	106367603	106367604	rs342290	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	7q22.3		rs342290-A	0.545	4E-143				Affymetrix [10369434] (imputed)	N
1396	chr7	106367635	106367636	rs67036916	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL7	5,358 Icelandic ancestry individuals	NA	7q22.3		rs67036916-A	0.4424	4E-18		0.161485	[0.13-0.2] unit increase	Illumina [7506463] (imputed)	N
1396	chr7	106367635	106367636	rs67036916	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Platelet count	108,208 Japanese ancestry individuals	NA	7q22.3	CCDC71L, PIK3CG	rs67036916-?	NR	2E-11		0.03918	[0.028-0.051] unit decrease novel	Illumina [6108953] (imputed)	N
1396	chr7	106370643	106370644	rs342292	28031487	Guo MH	2016-12-28	Proc Natl Acad Sci U S A	Comprehensive population-based genome sequencing provides insight into hematopoietic regulatory mechanisms.	Mean platelet volume	6,228 European ancestry individuals	NA	7q22.3	PIK3CG	rs342292-?	0.487	3E-11		0.032	[NR] fL increase	NR [16536512] (imputed)	N
1396	chr7	106370643	106370644	rs342292	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	7q22.3	CTB-111H14.1	rs342292-G	0.4534	3E-85		0.07155196	[0.064-0.079] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1396	chr7	106372218	106372219	rs342293	35023831	Chong M	2022-01-13	Elife	GWAS and ExWAS of blood Mitochondrial DNA copy number identifies 71 loci and highlights a potential causal role in dementia.	Mitochondrial DNA copy number	395,718 British, Irish, Other White, South Asian, African ancestry individuals	NA	7q22.3	NR	rs342293-G	0.36222	1E-40		0.0283	[0.024-0.032] unit increase	Affymetrix [23037915] (imputed)	N
1396	chr7	106372218	106372219	rs342293	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	7q22.3		rs342293-G	0.185941	5E-15		0.0331727	[0.025-0.041] unit decrease	Illumina [13478928] (imputed)	N
1396	chr7	106372218	106372219	rs342293	34553764	Little A	2021-09-06	Hum Mol Genet	Whole genome sequence analysis of platelet traits in the NHLBI trans-omics for precision medicine initiative.	Mean platelet volume	7,440 African American individuals, 5,466 Hispanic or Latin American individuals, 10,120 European ancestry individuals, 447 East Asian ancestry individuals, 12 individuals	7,857 African ancestry individuals	7q22.3		rs342293-G	0.410624	4E-57		0.14824615	[0.13-0.17] unit increase	NR [NR]	N
1396	chr7	106372218	106372219	rs342293	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Mean platelet volume	21,347 Hispanic or Latin American individuals	NA	7q22.3		rs342293-C	0.3751	5E-9		0.1143	[0.076-0.153] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1396	chr7	106372218	106372219	rs342293	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Mean platelet volume	16,201 African American or Afro-Caribbean individuals	NA	7q22.3		rs342293-C	0.3876	4E-12		0.1269	[0.091-0.163] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1396	chr7	106372218	106372219	rs342293	33385171	Hagg S	2020-12-31	Hum Genet	Deciphering the genetic and epidemiological landscape of mitochondrial DNA abundance.	Mitochondrial DNA levels	295,150 European ancestry individuals	NA	7q22.3	NR	rs342293-G	0.4374	1E-17		0.0220825	[0.017-0.027] unit increase	Affymetrix [3505788] (imputed)	N
1396	chr7	106372218	106372219	rs342293	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	7q22.3	CTB-111H14.1	rs342293-G	0.458611	7E-16		0.01785203	[0.014-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1396	chr7	106372218	106372219	rs342293	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	7q22.3	CTB-111H14.1	rs342293-G	0.454916	3E-395		0.09605153	[0.092-0.1] unit increase	Affymetrix [93095623] (imputed)	N
1396	chr7	106372218	106372219	rs342293	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	7q22.3	CTB-111H14.1	rs342293-G	0.454961	8E-1151		0.16386205	[0.16-0.17] unit increase	Affymetrix [93095623] (imputed)	N
1396	chr7	106372218	106372219	rs342293	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q22.3	NR	rs342293-G	0.398379	1E-318				Affymetrix, Illumina [24588908] (imputed)	N
1396	chr7	106372218	106372219	rs342293	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	8,189 South Asian ancestry individuals	NA	7q22.3	NR	rs342293-C	0.612651	6E-27		0.171962	[0.14-0.2] SD units decrease	Affymetrix, Illumina [28493265] (imputed)	N
1396	chr7	106372218	106372219	rs342293	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	10,737 African American or Afro-Caribbean and African ancestry individuals	NA	7q22.3	NR	rs342293-C	0.630875	5E-23		0.140288	[0.11-0.17] SD units decrease	Affymetrix, Illumina [36042313] (imputed)	N
1396	chr7	106372218	106372219	rs342293	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Platelet count	8,850 African American individuals, 18,949 Hispanic/Latino individuals, 541 Asian ancestry individuals, 603 Native American ancestry individuals, 385 individuals	NA	7q22.3	NR	rs342293-?	NR	4E-14		3.961549	[2.93-4.99] unit decrease	Illumina [30743395] (imputed)	N
1396	chr7	106372218	106372219	rs342293	31194788	Read RW	2019-06-13	PLoS One	GWAS and PheWAS of red blood cell components in a Northern Nevadan cohort.	Mean platelet volume	Up to 53 African American individuals, 100 Asian ancestry individuals, 4,175 European ancestry individuals, 138 Hispanic or Latin American individuals, 30 Native American individuals, 11 Pacific Islander ancestry individuals, 168 unknown ancestry individuals	NA	7q22.3	JMJD1C, REEP3	rs342293-G	0.4431	7E-11		0.1325	[0.093-0.172] fL increase	Illumina [498916]	N
1396	chr7	106372218	106372219	rs342293	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	7q22.3		rs342293-?	NR	1E-16				NR [~ 8900000] (imputed)	N
1396	chr7	106372218	106372219	rs342293	29185836	Chen MH	2017-11-29	Platelets	Exome-chip meta-analysis identifies association between variation in ANKRD26 and platelet aggregation.	Platelet aggregation	3,664 European ancestry individuals, 549 Old Order Amish (founder/genetic isolate) individuals	1,184 European ancestry individuals, 613 African American individuals	7q22.3	PIK3CG	rs342293-G	0.435	3E-7	(ephinephrine low 2)	0.121	[0.074-0.168] unit decrease	Illumina [129094]	N
1396	chr7	106372218	106372219	rs342293	29185836	Chen MH	2017-11-29	Platelets	Exome-chip meta-analysis identifies association between variation in ANKRD26 and platelet aggregation.	Platelet aggregation	3,664 European ancestry individuals, 549 Old Order Amish (founder/genetic isolate) individuals	1,184 European ancestry individuals, 613 African American individuals	7q22.3	PIK3CG	rs342293-G	0.435	3E-7	(ephinephrine high 2)	0.121	[0.074-0.168] unit decrease	Illumina [129094]	N
1396	chr7	106372218	106372219	rs342293	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	7q22.3	CTB-111H14.1	rs342293-G	0.4554	1E-431		0.1608287	[0.15-0.17] unit increase	Affymetrix [~ 2500000] (imputed)	N
1396	chr7	106372218	106372219	rs342293	24026423	Shameer K	2013-09-12	Hum Genet	A genome- and phenome-wide association study to identify genetic variants influencing platelet count and volume and their pleiotropic effects.	Mean platelet volume	6,291 European ancestry individuals	NA	7q22.3	FLJ36031, PIK3CG	rs342293-C	0.56	5E-22		0.15	[NR] unit decrease	Illumina [476395]	N
1396	chr7	106372218	106372219	rs342293	22423221	Qayyum R	2012-03-08	PLoS Genet	A meta-analysis and genome-wide association study of platelet count and mean platelet volume in african americans.	Platelet count	16,388 African American individuals	NA	7q22.3	PIK3CG	rs342293-C	0.386	2E-8		4.05	[2.64-5.46] 10^L decrease	Affymetrix, Illumina [~ 2200000] (imputed)	N
1396	chr7	106372218	106372219	rs342293	22139419	Gieger C	2011-11-30	Nature	New gene functions in megakaryopoiesis and platelet formation.	Mean platelet volume	13,106 European ancestry individuals, 1,652 Val Borbera (founder/genetic isolate) individuals, 593 Carlantino (founder/genetic isolate) individuals, 1,146 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,213 South Tyrolean (founder/genetic isolate) individuals, 890 Sorbian (founder/genetic isolate) individuals	Up to 16,960 European ancestry individuals, 855 Cliento (founder/genetic isolate) individuals, 1,023 Talana (founder/genetic isolate) individuals	7q22.3	FLJ36031, PIK3CG	rs342293-G	NR	7E-57		0.017	[0.015-0.019] ln(fl) increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1396	chr7	106372218	106372219	rs342293	19820697	Soranzo N	2009-10-11	Nat Genet	A genome-wide meta-analysis identifies 22 loci associated with eight hematological parameters in the HaemGen consortium.	Mean platelet volume	4,627 European ancestry individuals	9,316 European ancestry individuals	7q22.3	PIK3CG	rs342293-G	NR	2E-33		0.02	[0.013-0.017] fl increase	Affymetrix, Illumina [~ 2110000] (imputed)	N
1396	chr7	106372218	106372219	rs342293	19221038	Soranzo N	2009-02-12	Blood	A novel variant on chromosome 7q22.3 associated with mean platelet volume, counts, and function.	Mean platelet volume	1,221 individuals	7,365 individuals	7q22.3	intergenic	rs342293-G	0.45	1E-24		0.02	[0.014-0.018] log fl increase	Affymetrix [361352]	N
1396	chr7	106372621	106372622	rs342294	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MANF	5,363 Icelandic ancestry individuals	NA	7q22.3		rs342294-C	0.4486	1E-18		0.166796	[0.13-0.2] unit decrease	Illumina [7506463] (imputed)	N
1396	chr7	106372621	106372622	rs342294	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Platelet count	27,236 European ancestry individuals	NA	7q22.3		rs342294-T	0.3843	4E-10		0.0624	[0.043-0.082] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1396	chr7	106372621	106372622	rs342294	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Platelet count	16,201 African American or Afro-Caribbean individuals	NA	7q22.3		rs342294-T	0.3838	2E-9		0.069	[0.046-0.092] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1396	chr7	106372621	106372622	rs342294	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	7q22.3	NR	rs342294-C	0.455851	5E-21		0.017407	[0.014-0.021] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1396	chr7	106372621	106372622	rs342294	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	7q22.3	NR	rs342294-C	0.453261	3E-295		0.067703	[0.064-0.071] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1396	chr7	106372759	106372760	rs342295	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	7q22.3	CTB-111H14.1	rs342295-T	0.451877	8E-200		0.068249345	[0.064-0.073] unit decrease	Affymetrix [93095623] (imputed)	N
1396	chr7	106372759	106372760	rs342295	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	7q22.3	CTB-111H14.1	rs342295-T	0.4525	7E-196		0.1074866	[0.1-0.11] unit increase	Affymetrix [~ 2500000] (imputed)	N
1396	chr7	106372902	106372903	rs342296	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	145,648 East Asian ancestry individuals	NA	7q22.3	NR	rs342296-G	0.810322	1E-13		0.035456	[0.026-0.045] SD units increase	Affymetrix, Illumina [16710488] (imputed)	N
1396	chr7	106372902	106372903	rs342296	22423221	Qayyum R	2012-03-08	PLoS Genet	A meta-analysis and genome-wide association study of platelet count and mean platelet volume in african americans.	Mean platelet volume	16,388 African American individuals	NA	7q22.3	PIK3CG	rs342296-G	0.372	1E-11		0.16	[0.12-0.2] fL increase	Affymetrix, Illumina [~ 2200000] (imputed)	N
1396	chr7	106373717	106373718	rs342299	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	7q22.3		rs342299-T	NR	9E-230		0.0662	[0.062-0.07] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1396	chr7	106373717	106373718	rs342299	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	7q22.3		rs342299-C	0.546	8E-42				Affymetrix [10369434] (imputed)	N
1396	chr7	106373717	106373718	rs342299	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	15,171 African American or Afro-Caribbean and African ancestry individuals	NA	7q22.3	NR	rs342299-C	0.639748	2E-10		0.077784	[0.054-0.102] SD units increase	Affymetrix, Illumina [36877391] (imputed)	N
1396	chr7	106374192	106374193	rs62481823	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		AC004917.1	rs62481823-?	NR	1E-8	(female)	1.17352	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1396	chr7	106374547	106374548	rs12534473	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q22.3	NR	rs12534473-T	0.517002	3E-1103				Affymetrix, Illumina [17210439] (imputed)	N
1396	chr7	106374547	106374548	rs12534473	31080455	Fatumo S	2019-04-26	Front Genet	Complimentary Methods for Multivariate Genome-Wide Association Study Identify New Susceptibility Genes for Blood Cell Traits.	Mean platelet volume	1,624 Sub-Saharan African ancestry individuals	NA	7q22.3	CTB-30L5.1	rs12534473-?	NR	2E-8				Illumina [20594536] (imputed)	N
1396	chr7	106398789	106398790	rs71566703	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	7q22.3		rs71566703-C	0.883	4E-10				Affymetrix [10369434] (imputed)	N
1396	chr7	106405641	106405642	rs12705389	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls, 49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	7q22.3		rs12705389-T	NR	2E-12		0.0537	[0.039-0.069] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1396	chr7	106405641	106405642	rs12705389	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls	NA	7q22.3	RP5-884M6.1	rs12705389-T	0.241001	2E-12		0.06615352	[0.048-0.085] unit increase	Affymetrix [7288503] (imputed)	N
1396	chr7	106405641	106405642	rs12705389	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Pulse pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 Japanese ancestry individuals	7q22.3	CCDC71L, PIK3CG	rs12705389-T	0.1097	2E-12	(East Asian)	0.4692	[0.34-0.6] unit increase	Illumina [6200000] (imputed)	N
1396	chr7	106405641	106405642	rs12705389	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Pulse pressure	136,249 Japanese ancestry individuals	NA	7q22.3	CCDC71L, PIK3CG	rs12705389-?	NR	1E-8		0.03474	[0.023-0.047] unit increase	Illumina [6108953] (imputed)	N
1396	chr7	106409451	106409452	rs17398575	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	7q22.3	intergenic	rs17398575-A	0.241	7E-6		0.033	[0.019-0.047] unit increase	Affymetrix [7947838] (imputed)	N
1396	chr7	106409451	106409452	rs17398575	21909108	Bis JC	2011-09-11	Nat Genet	Meta-analysis of genome-wide association studies from the CHARGE consortium identifies common variants associated with carotid intima media thickness and plaque.	Carotid intima media thickness	Up to 31,211 European ancestry individuals	10,553 European ancestry individuals, 687 Orcadian individuals	7q22.3	PIK3CG	rs17398575-A	0.25	3E-6	(cIMT)	0.0067	[0.01-0.01] per unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1396	chr7	106409451	106409452	rs17398575	21909108	Bis JC	2011-09-11	Nat Genet	Meta-analysis of genome-wide association studies from the CHARGE consortium identifies common variants associated with carotid intima media thickness and plaque.	Carotid intima media thickness	Up to 31,211 European ancestry individuals	10,553 European ancestry individuals, 687 Orcadian individuals	7q22.3	PIK3CG	rs17398575-A	0.25	2E-12	(Plaque)	0.1619	[0.11-0.21] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1396	chr7	106410776	106410777	rs12705390	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	7q22.3		rs12705390-A	NR	1E-126		0.0574	[0.053-0.062] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
1396	chr7	106410776	106410777	rs12705390	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Angina pectoris	30,025 European ancestry cases, 440,906 European ancestry controls, 14,007 East Asian ancestry cases, 145,158 East Asian ancestry controls	NA	7q22.3		rs12705390-A	NR	6E-11		0.0664	[0.047-0.086] unit increase	Affymetrix, Illumina [25842036] (imputed)	N
1396	chr7	106410776	106410777	rs12705390	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	7q22.3	AF086203	rs12705390-A	0.1907	6E-69		0.7392	[0.66-0.82] mmHg increase	Affymetrix [NR] (imputed)	N
1396	chr7	106410776	106410777	rs12705390	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	7q22.3	AF086203	rs12705390-A	0.1908	7E-124		0.7464	[0.68-0.81] mmHg increase	Affymetrix [NR] (imputed)	N
1396	chr7	106410776	106410777	rs12705390	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Systolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	7q22.3	PIK3C	rs12705390-A	0.227	3E-19		0.619	[0.48-0.75] mm Hg increase	Affymetrix, Illumina, Perlegen [128272]	N
1396	chr7	106411857	106411858	rs17477177	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls	NA	7q22.3	RP5-884M6.1	rs17477177-C	0.200037	2E-11		0.06604031	[0.047-0.085] unit increase	Affymetrix [7288503] (imputed)	N
1396	chr7	106411857	106411858	rs17477177	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	7q22.3		rs17477177-?	NR	8E-15				NR [~ 8900000] (imputed)	N
1396	chr7	106411857	106411858	rs17477177	30510157	Franceschini N	2018-12-03	Nat Commun	GWAS and colocalization analyses implicate carotid intima-media thickness and carotid plaque loci in cardiovascular outcomes.	Carotid plaque	Up to 21,540 European ancestry cases, up to 26,894 European ancestry controls	NA	7q22.3	PIK3CG	rs17477177-T	0.79	4E-11		0.1305	[0.092-0.169] unit decrease	Affymetrix, Illumina [8578107] (imputed)	N
1396	chr7	106411857	106411858	rs17477177	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Pulse pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 Japanese ancestry individuals	7q22.3	PIK3CG	rs17477177-T	0.8907	1E-9	(Japanese)	0.5068	[0.34-0.67] unit decrease	Illumina [6200000] (imputed)	N
1396	chr7	106411857	106411858	rs17477177	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure (cigarette smoking interaction)	80,552 European ancestry individuals, 27,118 African individuals, 13,438 Asian individuals, 8,805 Hispanic individuals	305,513 European ancestry individuals, 7,786 African individuals, 148,932 Asian individuals, 13,533 Hispanic individuals, 4,414 Brazilian individuals	7q22.3	PIK3CG	rs17477177-?	NR	2E-38				Affymetrix, Illumina [18800000] (imputed)	N
1396	chr7	106411857	106411858	rs17477177	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Systolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	7q22.3	PIK3CG	rs17477177-C	0.211	1E-13	(EA, initial)	0.644	[0.47-0.81] unit increase	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
1396	chr7	106411857	106411858	rs17477177	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Pulse pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	7q22.3	PIK3CG	rs17477177-C	0.211	4E-22	(EA, initial)	0.549	[0.44-0.66] unit increase	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
1396	chr7	106411857	106411858	rs17477177	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	7q22.3	CCDC71L, PIK3CG	rs17477177-T		2E-8	(EA)	0.419	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1396	chr7	106411857	106411858	rs17477177	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	7q22.3	CCDC71L, PIK3CG	rs17477177-T		2E-10		0.435	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1396	chr7	106411857	106411858	rs17477177	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	7q22.3	CCDC71L, PIK3CG	rs17477177-T		3E-36		0.594	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1396	chr7	106411857	106411858	rs17477177	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	7q22.3	CCDC71L, PIK3CG	rs17477177-T		9E-30	(EA)	0.564	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1396	chr7	106411857	106411858	rs17477177	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	7q22.3	CCDC71L, PIK3CG	rs17477177-T		1E-34		0.555	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1396	chr7	106411857	106411858	rs17477177	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	7q22.3	CCDC71L, PIK3CG	rs17477177-T		4E-100		0.67	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1396	chr7	106411857	106411858	rs17477177	26390057	Kato N	2015-09-21	Nat Genet	Trans-ancestry genome-wide association study identifies 12 genetic loci influencing blood pressure and implicates a role for DNA methylation.	Pulse pressure	31,516 East Asian ancestry individuals,  35,352 European ancestry individuals, 33,126 South Asian ancestry individuals	87,205 individuals, 48,268 East Asian ancestry individuals, 68,456 European ancestry individuals and 16,328 South Asian ancestry individuals	7q22.3	PIK3CG	rs17477177-T	0.7897	4E-6	(EA)	0.6451	[0.38-0.92] mmHg decrease	Affymetrix, Illumina, Perlegen [~ 2100000] (imputed)	N
1396	chr7	106411857	106411858	rs17477177	26390057	Kato N	2015-09-21	Nat Genet	Trans-ancestry genome-wide association study identifies 12 genetic loci influencing blood pressure and implicates a role for DNA methylation.	Pulse pressure	31,516 East Asian ancestry individuals,  35,352 European ancestry individuals, 33,126 South Asian ancestry individuals	87,205 individuals, 48,268 East Asian ancestry individuals, 68,456 European ancestry individuals and 16,328 South Asian ancestry individuals	7q22.3	PIK3CG	rs17477177-T	0.7664	4E-12		0.5308	[0.38-0.68] mmHg decrease	Affymetrix, Illumina, Perlegen [~ 2100000] (imputed)	N
1396	chr7	106411857	106411858	rs17477177	21909110	Wain LV	2011-09-11	Nat Genet	Genome-wide association study identifies six new loci influencing pulse pressure and mean arterial pressure.	Blood pressure	74,064 European ancestry individuals	48,607 European ancestry individuals	7q22.3	PIK3CG	rs17477177-T	0.72	2E-13	(Pulse Pressure)	0.418	[0.31-0.53] mmHg decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1396	chr7	106412081	106412082	rs62481856	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	7q22.3		rs62481856-?	NR	5E-75				NR [~ 8900000] (imputed)	N
1396	chr7	106412081	106412082	rs62481856	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Pulse pressure x alcohol consumption (light vs heavy) interaction (2df test)	56,705 European ancestry heavy and light drinkers, 9,725 African American or Afro-Caribbean heavy and light drinkers, 1,789 Asian ancestry heavy and light drinkers, 4,812 Hispanic or Latin American heavy and light drinkers	42,079 European ancestry heavy drinkers, 217 African American heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic heavy drinkers, 74,756 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	7q22.3	PIK3CG, CCDC71L	rs62481856-A	0.2	5E-32	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1396	chr7	106412081	106412082	rs62481856	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Pulse pressure x alcohol consumption (light vs heavy) interaction (2df test)	56,705 European ancestry heavy and light drinkers, 9,725 African American or Afro-Caribbean heavy and light drinkers, 1,789 Asian ancestry heavy and light drinkers, 4,812 Hispanic or Latin American heavy and light drinkers	42,079 European ancestry heavy drinkers, 217 African American heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic heavy drinkers, 74,756 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	7q22.3	PIK3CG, CCDC71L	rs62481856-A	0.2	4E-33	(AA, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1396	chr7	106414068	106414069	rs2392929	31879980	German CA	2019-12-26	Genet Epidemiol	Ordered multinomial regression for genetic association analysis of ordinal phenotypes at Biobank scale.	Hypertension	30,822 British ancestry normal blood pressure individuals, 25,242 British ancestry elevated blood pressure individuals, 50,461 British ancestry stage 1 hypertension individuals, 75,286 British ancestry stage 2 hypertension individuals, 3,754 British ancestry hypertension crisis individuals	NA	7q22.3	NR	rs2392929-?	NR	2E-17		0.0652155	NR unit decrease	Affymetrix [464137]	N
1396	chr7	106414068	106414069	rs2392929	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	7q22.3		rs2392929-?	NR	7E-11				NR [~ 8900000] (imputed)	N
1396	chr7	106414068	106414069	rs2392929	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Diastolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	7q22.3	AF086203	rs2392929-G	0.6507	4E-17		0.2573	[0.2-0.32] mmHg increase	Affymetrix [NR] (imputed)	N
1396	chr7	106414068	106414069	rs2392929	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption interaction (2df test)	63,608 European ancestry drinkers, 10,193 African American or Afro-Caribbean heavy drinkers,  2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,494 European ancestry non-drinkers, 11,224 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,002 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,452 Hispanic drinkers, 43,316 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,945 Asian ancestry non-drinkers, 6,925 Hispanic non-drinkers	7q22.3	PIK3CG, CCDC71L	rs2392929-T	0.81	6E-35	(AA, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1396	chr7	106414068	106414069	rs2392929	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption (light vs heavy) interaction (2df test)	12,758 European ancestry heavy drinkers, 1,326 African American or Afro-Caribbean heavy drinkers, 648 Asian ancestry heavy drinkers, 364 Hispanic or Latin American heavy drinkers, 43,947 European ancestry light drinkers, 8,239 African American or Afro-Caribbean light drinkers, 1,141 Asian ancestry light drinkers, 4,448 Hispanic or Latin American light drinkers	42,078 European ancestry heavy drinkers, 217 African American heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic heavy drinkers, 74,706 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	7q22.3	PIK3CG, CCDC71L	rs2392929-T	0.8	1E-14	(AA, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1396	chr7	106414068	106414069	rs2392929	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Pulse pressure x alcohol consumption interaction (2df test)	91,099 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	238,053 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,447 Hispanic ancestry drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic ancestry non-drinkers	7q22.3	PIK3CG, CCDC71L	rs2392929-T	0.81	1E-99	(AA, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1396	chr7	106414068	106414069	rs2392929	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Pulse pressure x alcohol consumption interaction (2df test)	91,099 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	238,053 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,447 Hispanic ancestry drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic ancestry non-drinkers	7q22.3	PIK3CG, CCDC71L	rs2392929-T	0.8	2E-97	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1396	chr7	106416453	106416453	rs35267491	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	7q22.3		rs35267491-TA	NR	4E-47		0.0437	[0.038-0.05] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1396	chr7	106416453	106416453	rs35267491	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	7q22.3		rs35267491-TA	NR	1E-8		0.0174	[0.011-0.023] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
1396	chr7	106416466	106416467	rs13225723	30510157	Franceschini N	2018-12-03	Nat Commun	GWAS and colocalization analyses implicate carotid intima-media thickness and carotid plaque loci in cardiovascular outcomes.	Carotid intima media thickness	Up to 71,128 European ancestry individuals	NA	7q22.3	PIK3CG	rs13225723-A	0.22	3E-9		0.0052	[0.0034-0.007] unit increase	Affymetrix, Illumina [9574088] (imputed)	N
1396	chr7	106416466	106416467	rs13225723	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption interaction (2df test)	63,608 European ancestry drinkers, 10,193 African American or Afro-Caribbean heavy drinkers,  2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,494 European ancestry non-drinkers, 11,224 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,002 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,452 Hispanic drinkers, 43,316 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,945 Asian ancestry non-drinkers, 6,925 Hispanic non-drinkers	7q22.3	PIK3CG, CCDC71L	rs13225723-A	0.21	1E-24	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1396	chr7	106417962	106417963	rs35301188	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	7q22.3		rs35301188-A	NR	4E-11		0.0457	[0.032-0.059] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1396	chr7	106417962	106417963	rs35301188	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	7q22.3	RP5-884M6.1	rs35301188-A	0.169551	3E-11		0.053642906	[0.038-0.069] unit increase	Affymetrix [7288503] (imputed)	N
1396	chr7	106419295	106419296	rs12536419	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls, 22,356 East Asian ancestry cases, 156,370 East Asian ancestry controls	NA	7q22.3		rs12536419-C	NR	1E-11		0.065	[0.046-0.084] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1396	chr7	106428169	106428170	rs7781571	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	7q22.3		rs7781571-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1397	chr7	106432359	106432360	rs10230696	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	7q22.3	RP5-884M6.1	rs10230696-T	0.825469	4E-9		0.01729733	[0.012-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1397	chr7	106468729	106468730	rs73186279	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Antisaccade task score	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	7q22.3	PIK3CG	rs73186279-G	NR	6E-7		0.20177172	[0.12-0.28] unit decrease	Illumina [> 6200000] (imputed)	N
1397	chr7	106486242	106486243	rs2188420	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interferon gamma levels	7,701 Finnish ancestry individuals	NA	7q22.3	NR	rs2188420-G		1E-6		0.0987	[0.059-0.138] SD units decrease	NR [10700000] (imputed)	N
1397	chr7	106495808	106495809	rs17153527	19448619	Stolk L	2009-05-15	Nat Genet	Loci at chromosomes 13, 19 and 20 influence age at natural menopause.	Menopause (age at onset)	2,979 European ancestry female individuals	2,560 European ancestry female individuals	7q22.3	NR	rs17153527-?	NR	4E-7		0.51	[0.31-0.71] years increase	Illumina [315418]	N
1397	chr7	106503397	106503398	rs12705393	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	7q22.3	NR	rs12705393-G	0.270055	3E-11		0.014099	[0.0099-0.0183] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
1397	chr7	106560390	106560391	rs144994126	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	7q22.3	NR	rs144994126-?	NR	3E-8				Illumina [7760689] (imputed)	N
1398	chr7	106594884	106594885	rs7779057	23151678	Takata R	2012-11-15	J Hum Genet	Impact of four loci on serum tamsulosin hydrochloride concentration.	Serum tamsulosin hydrochloride concentration	182 Japanese ancestry individuals	NA	7q22.3	intergenic	rs7779057-C	0.02	2E-7		17.16	[10.93-23.39] unit increase	Illumina [481678]	N
1398	chr7	106627028	106627029	rs2395811	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	7q22.3	PRKAR2B	rs2395811-C	0.274	7E-11		0.005	[0.0034-0.0066] unit increase	Affymetrix, Illumina [8176554] (imputed)	N
1398	chr7	106628064	106628065	rs6964591	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	7q22.3		rs6964591-C	NR	3E-12		0.0154	[0.011-0.02] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
1398	chr7	106628064	106628065	rs6964591	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	7q22.3	NR	rs6964591-C	NR	2E-9		0.0172	[0.012-0.023] unit increase	Affymetrix [9000000] (imputed)	N
1398	chr7	106632112	106632113	rs12530679	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	7q22.3	PRKAR2B	rs12530679-A	0.51534	1E-9		0.0123041	[0.0083-0.0163] unit increase	Affymetrix [NR] (imputed)	N
1398	chr7	106662082	106662083	rs7798500	22379998	McCormack M	2012-03-01	Pharmacogenomics	Genome-wide mapping for clinically relevant predictors of lamotrigine- and phenytoin-induced hypersensitivity reactions.	Adverse response to lamotrigine and phenytoin	34 European ancestry lamotrigine-induced hypersensitivity cases, 42 European ancestry phenytoin-induced hypersensitivity cases, 1,296 European ancestry controls	NA	7q22.3	PRKAR2B	rs7798500-?	NR	6E-6	(PHT)			Illumina [NR]	N
1398	chr7	106662963	106662964	rs183880447	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	7q22.3	PRKAR2B	rs183880447-A	0.0042	2E-6		0.2692	[0.16-0.38] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1398	chr7	106663167	106663168	rs849312	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	7q22.3		rs849312-G	NR	7E-9		0.0138	[0.0091-0.0185] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
1398	chr7	106664846	106664847	rs849298	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	7q22.3		rs849298-A	0.46016	2E-9		0.013399511	[0.009-0.0178] unit increase	Affymetrix [93095623] (imputed)	N
1398	chr7	106664846	106664847	rs849298	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	7q22.3		rs849298-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1399	chr7	106743877	106743878	rs55760285	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	7q22.3	NR	rs55760285-?	NR	2E-7		5.199	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1399	chr7	106763217	106763218	rs13224682	20195266	Adkins DE	2010-03-02	Mol Psychiatry	Genomewide pharmacogenomic study of metabolic side effects to antipsychotic drugs.	Response to antipsychotic treatment	421 European ancestry, 214 African American, and 103 cases	NA	7q22.3	PRKAR2B	rs13224682-?	0.072	6E-8	(clozapine-triglycerides)			Affymetrix [492900]	N
1399	chr7	106772902	106772903	rs76486009	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		PRKAR2B	rs76486009-?	NR	8E-9	(male)	6.45194	[NR] unit increase	Affymetrix [NR] (imputed)	N
1399	chr7	106779129	106779130	rs138996723	34404248	Tsao YC	2021-08-18	Cephalalgia	Genome-wide association study reveals susceptibility loci for self-reported headache in a large community-based Asian population.	Headache	2,084 Taiwanese ancestry cases, 11,822 Taiwanese ancestry controls	NA	7q22.3		rs138996723-A	1.0E-4	1E-7		19.91	[4.134-95.92]	Affymetrix [7842171] (imputed)	N
1399	chr7	106782682	106782683	rs3752645	24662972	Figueroa JD	2014-03-24	Carcinogenesis	Genome-wide interaction study of smoking and bladder cancer risk.	Bladder cancer (smoking interaction)	560 European ancestry never smoker cases, 2,442 European ancestry ever smoker cases, 1,406 European ancestry never smoker controls, 3,005 European ancestry ever smoker controls	494 European ancestry never smoker cases, 1,927 European ancestry ever smoker cases, 2,257 European ancestry never smoker controls, 3,490 European ancestry ever smoker controls	7q22.3	PRKAR2B	rs3752645-?	NR	6E-6	(multiplicative, prospective analysis)			Illumina [491011]	N
1399	chr7	106789151	106789152	rs975935	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	7q22.3		rs975935-G	NR	2E-9		0.0166	[0.011-0.022] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
1399	chr7	106796536	106796537	rs62483619	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	7q22.3		rs62483619-T	NR	2E-17		0.0215	[0.017-0.026] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
1399	chr7	106801087	106801088	rs257377	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	7q22.3	NR	rs257377-G	0.79674	2E-9		0.0143025	[0.0096-0.019] unit increase	Affymetrix [15000001]	N
1399	chr7	106803183	106803184	rs257380	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	7q22.3		rs257380-A	NR	5E-9		0.0123	[0.0082-0.0164] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
1399	chr7	106809648	106809649	rs4730221	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q22.3	NR	rs4730221-C	0.52118	4E-12				Affymetrix, Illumina [23467995] (imputed)	N
1400	chr7	106835409	106835410	rs2283038	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	7q22.3	NR	rs2283038-T	0.2367	8E-15		0.002077	[0.0016-0.0026] unit decrease	Affymetrix [NR] (imputed)	N
1400	chr7	106836241	106836242	rs3801964	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	7q22.3		rs3801964-C	NR	7E-9		0.0118	[0.0079-0.0157] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
1400	chr7	106844693	106844694	rs75932578	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	7q22.3	NR	rs75932578-C	0.7841	4E-8		1.0405828	[1.03-1.05]	Affymetrix, Illumina [NR] (imputed)	N
1400	chr7	106849184	106849185	rs1859294	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	7q22.3	HBP1	rs1859294-?	NR	3E-6	(aspartate)	0.2824502	[0.16-0.4] unit increase	Affymetrix [at least 2500000] (imputed)	N
1400	chr7	106849184	106849185	rs1859294	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	7q22.3	HBP1	rs1859294-?	NR	3E-6	(anthranilic acid)	0.2093303	[0.12-0.3] unit increase	Affymetrix [at least 2500000] (imputed)	N
1400	chr7	106849184	106849185	rs1859294	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	7q22.3	HBP1	rs1859294-?	NR	2E-6	(glutamate)	0.21520782	[0.13-0.3] unit increase	Affymetrix [at least 2500000] (imputed)	N
1400	chr7	106849184	106849185	rs1859294	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	7q22.3	HBP1	rs1859294-?	NR	1E-6	(carnosine)	0.3067127	[0.18-0.43] unit increase	Affymetrix [at least 2500000] (imputed)	N
1400	chr7	106853816	106853817	rs12672451	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	7q22.3	COG5	rs12672451-?	NR	2E-10		0.511	[0.35-0.67] unit decrease	Affymetrix [11100000] (imputed)	N
1400	chr7	106856001	106856002	rs62483627	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	7q22.3	COG5	rs62483627-A	0.24	5E-9		1.05	[1.03-1.07]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1400	chr7	106914943	106914944	rs17428504	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Serum alkaline phosphatase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	7q22.3	COG5	rs17428504-?		3E-8		0.034	[0.022-0.046] unit decrease	Illumina [31500000] (imputed)	N
1400	chr7	106916120	106916121	rs112665932	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	7q22.3		rs112665932-?	NR	2E-7				NR [~ 8900000] (imputed)	N
1400	chr7	106922378	106922379	rs67183972	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	7q22.3	COG5	rs67183972-T	0.0583	8E-9		0.2407	[0.16-0.32] mmHg increase	Affymetrix [NR] (imputed)	N
1400	chr7	106931292	106931292	rs113960908	33568662	Dashti HS	2021-02-10	Nat Commun	Genetic determinants of daytime napping and effects on cardiometabolic health.	Daytime nap	452,633 European ancestry individuals	541,333 European ancestry individuals	7q22.3	COG5	rs113960908-GGT		2E-12		0.0074	[0.0052-0.0096] unit increase	Affymetrix [13304133] (imputed)	N
1400	chr7	106938419	106938420	rs3815148	20112360	Kerkhof HJ	2010-01-07	Arthritis Rheum	A genome-wide association study identifies an osteoarthritis susceptibility locus on chromosome 7q22.	Osteoarthritis	1,341 European ancestry cases, 3,496 European ancestry controls	9,779 European ancestry cases, up to 31,818 European ancestry controls, 3,818 cases, 7,278 controls	7q22.3	COG5	rs3815148-C	0.23	8E-8		1.14	[1.09-1.19]	Illumina [500510]	N
1400	chr7	106942038	106942039	rs4730231	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	7q22.3	NR	rs4730231-?	NR	3E-7		5.14	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1400	chr7	106946194	106946195	rs2299421	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	7q22.3		rs2299421-G	NR	1E-8		0.0124	[0.0081-0.0167] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
1401	chr7	106957160	106957161	rs150483923	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	7q22.3	COG5	rs150483923-C	0.774074	6E-17		0.0197272	[0.015-0.024] unit decrease	Affymetrix [NR] (imputed)	N
1401	chr7	106957160	106957161	rs150483923	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	7q22.3	NA	rs150483923-C	0.7789	1E-8	(Female)	1.0526316	[1.03-1.07]	Affymetrix, Illumina [NR] (imputed)	N
1401	chr7	106962947	106962948	rs77605964	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	7q22.3	COG5	rs77605964-G	0.773081	8E-14		0.0170398	[0.013-0.022] unit decrease	Affymetrix [NR] (imputed)	N
1401	chr7	107017134	107017135	rs75999022	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	7q22.3	GPR22	rs75999022-C	0.773475	1E-25		0.00284435	[0.0023-0.0034] unit increase	Affymetrix [13995440] (imputed)	N
1401	chr7	107019946	107019947	rs115172170	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	7q22.3	COG5	rs115172170-T	0.9429	5E-11		0.2459	[0.17-0.32] unit decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1401	chr7	107050220	107050221	rs12537785	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls, 20,367 East Asian ancestry cases, 158,359 East Asian ancestry controls	NA	7q22.3		rs12537785-C	NR	3E-8		0.0549	[0.035-0.074] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1401	chr7	107072680	107072681	rs4515482	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls	NA	7q22.3	COG5	rs4515482-C	0.224624	2E-8		0.05535786	[0.036-0.075] unit decrease	Affymetrix [7288503] (imputed)	N
1401	chr7	107074514	107074515	rs12154818	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	7q22.3	NR	rs12154818-?	NR	6E-7		4.996	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1401	chr7	107075140	107075141	rs10250582	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	7q22.3	COG5	rs10250582-T	0.498346	2E-10		0.014339912	[0.0099-0.0188] unit increase	Affymetrix [93095623] (imputed)	N
1402	chr7	107113851	107113852	rs17481621	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	7q22.3	NR	rs17481621-C	0.176	4E-9		0.00833818	[0.0056-0.0111] unit decrease	NR [9732723] (imputed)	N
1402	chr7	107117446	107117447	rs1858889	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	7q22.3		rs1858889-?	NR	3E-11		0.0134514	[0.0095-0.0174] unit decrease	NR [6912294] (imputed)	N
1402	chr7	107117446	107117447	rs1858889	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	7q22.3	NR	rs1858889-C	0.50084	4E-11		0.012836	[0.009-0.0166] unit increase	Affymetrix [16668957] (imputed)	N
1402	chr7	107119046	107119047	rs12534124	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	7q22.3	COG5	rs12534124-G	0.79	4E-20		9.18	z-score increase	Affymetrix [4311822] (imputed)	N
1402	chr7	107125938	107125939	rs4730248	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	7q22.3		rs4730248-G	NR	1E-22		0.0257	[0.021-0.031] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
1402	chr7	107140238	107140239	rs2712199	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	7q22.3	COG5	rs2712199-A	0.7006	8E-9		0.0149	[0.0098-0.02] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1402	chr7	107165404	107165405	rs2520258	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q22.3	COG5	rs2520258-T	0.512109	4E-12	(18 ms)	0.0396878	[0.029-0.051] unit decrease	Affymetrix [10000000] (imputed)	N
1402	chr7	107165404	107165405	rs2520258	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q22.3	COG5	rs2520258-T	0.512109	2E-12	(16 ms)	0.0398542	[0.029-0.051] unit decrease	Affymetrix [10000000] (imputed)	N
1402	chr7	107168334	107168335	rs2023685	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	7q22.3	COG5	rs2023685-?	NR	4E-6	(anthranilic acid)	0.22028525	[0.13-0.31] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1402	chr7	107175589	107175590	rs141716176	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	7q22.3	NR	rs141716176-?	NR	7E-6		4.509	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1402	chr7	107176779	107176780	rs112370447	28714975	Nelson CP	2017-07-17	Nat Genet	Association analyses based on false discovery rate implicate new loci for coronary artery disease.	Coronary artery disease (myocardial infarction, percutaneous transluminal coronary angioplasty, coronary artery bypass grafting, angina or chromic ischemic heart disease)	18,467 European and unknown ancestry cases, 45,264 European and unknown ancestry controls	57,347 European and unknown ancestry cases, 219,521 European and unknown ancestry controls	7q22.3	intergenic	rs112370447-T	0.28	1E-6		1.05	[1.03-1.07]	Affymetrix [9149595] (imputed)	N
1402	chr7	107197693	107197694	rs6979198	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Sleep duration	384,317 European ancestry individuals	NA	7q22.3		rs6979198-G	0.2109	1E-8		0.01716	[0.011-0.023] unit increase	Affymetrix, Illumina [10862567] (imputed)	N
1402	chr7	107199458	107199459	rs185489352	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	7q22.3	NR	rs185489352-?	NR	8E-6		3.4477	[1.16-5.74] unit decrease	Illumina [at least 560000] (imputed)	N
1402	chr7	107207694	107207695	rs4730250	21068099	Evangelou E	2010-11-10	Ann Rheum Dis	Meta-analysis of genome-wide association studies confirms a susceptibility locus for knee osteoarthritis on chromosome 7q22.	Osteoarthritis	2,371 European ancestry cases, 35,909 European ancestry controls	4,338 European ancestry cases, 8,530 European ancestry controls, 1,183 East Asian ancestry cases, 1,245 East Asian ancestry controls	7q22.3	DUS4L	rs4730250-G	0.17 (European)	6E-8		1.15	[1.10-1.22]	Affymetrix, Illumina [2335627] (imputed)	N
1402	chr7	107210382	107210383	rs11977187	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	7q22.3	DUS4L	rs11977187-?	NR	8E-10		0.0327593	[0.022-0.043] unit decrease	Illumina [4804024] (imputed)	N
1403	chr7	107224564	107224565	rs7778250	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Sleep duration	384,317 European ancestry individuals	NA	7q22.3		rs7778250-C	0.2898	5E-8		0.0147	[0.0094-0.02] unit decrease	Affymetrix, Illumina [10862567] (imputed)	N
1403	chr7	107230025	107230026	rs2189839	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	7q22.3	BCAP29	rs2189839-A	0.2899	5E-8		0.0345	[0.022-0.047] unit increase	Affymetrix [at least 7947838] (imputed)	N
1403	chr7	107232368	107232369	rs2107713	32469254	Matsunaga H	2020-05-29	Circ Genom Precis Med	Transethnic Meta-analysis of Genome-wide Association Studies Identifies Three New Loci and Characterizes Population-specific Differences for Coronary Artery Disease.	Coronary artery disease	15,302 Japanese ancestry cases, 76,014 European and East Asian ancestry cases, 36,140 Japanese ancestry controls, 264,785 European and East Asian ancestry controls	NA	7q22.3	BCAP29	rs2107713-T	0.3	5E-8		1.05	[1.03-1.06]	Illumina [5167567] (imputed)	N
1403	chr7	107237806	107237807	rs7809950	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	7q22.3	NR	rs7809950-T	0.2873	3E-8	(Lingual)	10.707687	[6.93-14.48] unit increase	Affymetrix, Illumina [NR]	N
1403	chr7	107237806	107237807	rs7809950	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	7q22.3	BCAP29	rs7809950-T	0.283	4E-8		0.039	[0.025-0.053] unit increase	Affymetrix [7947838] (imputed)	N
1403	chr7	107244544	107244545	rs10953541	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	7q22.3	NR	rs10953541-T	NR	8E-12		0.0189	[0.013-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
1403	chr7	107244544	107244545	rs10953541	21378988	Coronary Artery Disease (C4D) Genetics Consortium	2011-03-06	Nat Genet	A genome-wide association study in Europeans and South Asians identifies five new loci for coronary artery disease.	Coronary heart disease	8,424 European ancestry cases, 7,268 European ancestry controls, 6,996 South Asian ancestry cases, 7,794 South Asian ancestry controls	18,049 European ancestry cases, 16,357 European ancestry controls, 3,359 South Asian ancestry cases, 2,828 South Asian ancestry controls	7q22.3	intergenic	rs10953541-C	0.80	3E-8		1.08	[1.05-1.11]	Illumina [574919]	N
1403	chr7	107259720	107259721	rs68170813	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	118,886 East Asian ancestry individuals	NA	7q22.3		rs68170813-C	0.092695	7E-10		0.0416414	[0.028-0.055] unit decrease	Illumina [13474352] (imputed)	N
1403	chr7	107259720	107259721	rs68170813	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	7q22.3	BCAP29	rs68170813-T	0.7654	6E-6		0.0343	[0.02-0.049] unit increase	NR [8041861] (imputed)	N
1403	chr7	107283212	107283213	rs563105472	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	7q22.3	BANF1P5	rs563105472-A	0.9956	5E-7		0.2986	[0.18-0.42] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1403	chr7	107292662	107292663	rs2395909	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	7q22.3	NR	rs2395909-?	NR	2E-6	(Latino)	0.2462	[NR] unit increase	Illumina [up to 11892802] (imputed)	N
1403	chr7	107304832	107304833	rs117047270	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum alkaline phosphatase levels	105,030 Japanese ancestry individuals	NA	7q22.3	SLC26A4	rs117047270-?	NR	2E-8		0.04745	[0.031-0.064] unit decrease novel	Illumina [6108953] (imputed)	N
1403	chr7	107318786	107318787	rs57346042	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7q22.3	NR	rs57346042-T	0.0122	4E-9	(S100A13)	0.0134	NR unit increase	Illumina [1671387] (imputed)	N
1403	chr7	107336057	107336058	rs2188561	23743675	Kapoor M	2013-06-07	Hum Genet	A meta-analysis of two genome-wide association studies to identify novel loci for maximum number of alcoholic drinks.	Alcohol consumption	2,322 European ancestry individuals from 118 families, 2,593 European ancestry individuals		7q22.3	SLC26A4	rs2188561-?	0.21	9E-6		0.08	[0.041-0.119] unit decrease	Illumina [4058415] (imputed)	N
1404	chr7	107370631	107370632	rs9718496	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	7q22.3		rs9718496-A	0.247125	7E-9		0.01491006	[0.0099-0.0199] unit decrease	Affymetrix [93095623] (imputed)	N
1404	chr7	107383743	107383744	rs3735609	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	7q22.3	NR	rs3735609-G	0.247743	2E-11		0.014715	[0.01-0.019] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1404	chr7	107384277	107384278	rs3735607	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q22.3	NR	rs3735607-T	0.259367	8E-10				Affymetrix, Illumina [23472807] (imputed)	N
1404	chr7	107443385	107443386	rs4730268	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	7q31.1	NR	rs4730268-C	0.783243083222074	5E-6	(IGP48)	0.1679	[0.096-0.24] unit decrease	Illumina [~ 2500000] (imputed)	N
1404	chr7	107450032	107450033	rs7805114	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	7q31.1	SLC26A3	rs7805114-?	NR	5E-11	(subset analysis)			Illumina [130052]	N
1404	chr7	107453102	107453103	rs2108225	19915573	Asano K	2009-11-15	Nat Genet	A genome-wide association study identifies three new susceptibility loci for ulcerative colitis in the Japanese population.	Ulcerative colitis	376 Japanese ancestry cases, 934 Japanese ancestry controls	376 Japanese ancestry cases, 1,097 Japanese ancestry controls	7q31.1	SLC26A3	rs2108225-A	0.65	1E-7		1.32	[1.19-1.47]	Illumina [513923]	N
1404	chr7	107473152	107473153	rs714583	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cholelithiasis	26,122 European ancestry cases, 461,431 European ancestry controls, 9,305 East Asian ancestry cases, 168,253 East Asian ancestry controls	NA	7q31.1		rs714583-A	NR	1E-21		0.0864	[0.069-0.104] unit decrease	Affymetrix, Illumina [25844936] (imputed)	N
1404	chr7	107476912	107476913	rs990107	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Ulcerative colitis	5,371 European ancestry cases, 412,561 European ancestry controls, 314 East Asian ancestry cases, 178,375 East Asian ancestry controls	NA	7q31.1		rs990107-G	NR	9E-10		0.1203	[0.082-0.159] unit decrease	Affymetrix, Illumina [25840981] (imputed)	N
1404	chr7	107477754	107477755	rs73191662	29724592	Pottier C	2018-04-30	Lancet Neurol	Potential genetic modifiers of disease risk and age at onset in patients with frontotemporal lobar degeneration and GRN mutations: a genome-wide association study.	Behavioural changes in frontotemporal lobe dementia	262 European ancestry cases, 120 European ancestry controls	NA	7q31.1	SLC26A3	rs73191662-C	0.72	2E-6		2.7027025	[1.28-25]	Illumina [7033776] (imputed)	N
1405	chr7	107479518	107479519	rs4730273	19122664	Silverberg MS	2009-01-04	Nat Genet	Ulcerative colitis-risk loci on chromosomes 1p36 and 12q15 found by genome-wide association study.	Ulcerative colitis	1,022 European ancestry cases, 2,503 European ancestry controls	1,387 European ancestry cases, 1,115 European ancestry controls	7q31.1	intergenic	rs4730273-?	0.70	5E-6		1.22		Illumina [280748]	N
1405	chr7	107480125	107480126	rs6466198	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	7q31.1	intergenic	rs6466198-?	NR	1E-21	(subset analysis)			Illumina [130052]	N
1405	chr7	107480125	107480126	rs6466198	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	7q31.1	NR	rs6466198-?	NR	2E-25	(EA)			Affymetrix, Illumina [~ 9000000] (imputed)	N
1405	chr7	107480125	107480126	rs6466198	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	7q31.1	NR	rs6466198-?	NR	1E-18	(EA)			Affymetrix, Illumina [~ 9000000] (imputed)	N
1405	chr7	107480314	107480315	rs4380874	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Ulcerative colitis	12,366 European and unknown ancestry cases, 33,609 European and unknown ancestry controls	NA	7q31.1	SLC26A3, DLD, LAMB1	rs4380874-?		9E-21				Illumina [9578670] (imputed)	N
1405	chr7	107480314	107480315	rs4380874	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	7q31.1	SLC26A3, DLD, LAMB1	rs4380874-?		8E-16				Illumina [9725440] (imputed)	N
1405	chr7	107480314	107480315	rs4380874	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	7q31.1	NR	rs4380874-A	0.4093	6E-25	(EA)	1.1398237	[1.11-1.16]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1405	chr7	107480314	107480315	rs4380874	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	7q31.1	NR	rs4380874-A	0.4093	2E-15	(EA)	1.0839795	[1.06-1.1]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1405	chr7	107480314	107480315	rs4380874	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Ulcerative colitis	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls	7q31.1	DLD	rs4380874-T	0.405	2E-26		1.137	[1.097-1.177]	Affymetrix, Illumina [1230000] (imputed)	N
1405	chr7	107484436	107484437	rs4730276	19122664	Silverberg MS	2009-01-04	Nat Genet	Ulcerative colitis-risk loci on chromosomes 1p36 and 12q15 found by genome-wide association study.	Ulcerative colitis	1,022 European ancestry cases, 2,503 European ancestry controls	1,387 European ancestry cases, 1,115 European ancestry controls	7q31.1	DLD, SLC26A3, LAMB1	rs4730276-?	0.39	9E-6		1.22		Illumina [280748]	N
1405	chr7	107492788	107492789	rs4510766	21297633	Anderson CA	2011-02-06	Nat Genet	Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47.	Ulcerative colitis	6,687 European ancestry cases, 19,718 European ancestry controls	9,628 European ancestry cases, 12,917 European ancestry controls	7q31.1	intergenic	rs4510766-A	0.56	2E-16		1.2	[1.15-1.26]	Affymetrix, Illumina [~ 1100000] (imputed)	N
1405	chr7	107495433	107495434	rs886774	19915572	Barrett JC	2009-11-15	Nat Genet	Genome-wide association study of ulcerative colitis identifies three new susceptibility loci, including the HNF4A region.	Ulcerative colitis	2,361 European ancestry cases, 5,417 European ancestry controls	2,321 European ancestry cases, 4,818 European ancestry controls	7q31.1	LAMB1	rs886774-G	0.41	3E-8		1.11	[1.03-1.19]	Affymetrix [NR]	N
1405	chr7	107503440	107503441	rs4598195	20228799	McGovern DP	2010-03-14	Nat Genet	Genome-wide association identifies multiple ulcerative colitis susceptibility loci.	Ulcerative colitis	2,693 European ancestry cases, 6,791 European ancestry controls	2,009 European ancestry cases, 1,580 European ancestry controls	7q31.1	LAMB1, DLD	rs4598195-A	NR	8E-8		1.11	[NR]	Illumina [266047]	N
1405	chr7	107503440	107503441	rs4598195	19122664	Silverberg MS	2009-01-04	Nat Genet	Ulcerative colitis-risk loci on chromosomes 1p36 and 12q15 found by genome-wide association study.	Ulcerative colitis	1,022 European ancestry cases, 2,503 European ancestry controls	1,387 European ancestry cases, 1,115 European ancestry controls	7q31.1	DLD, SLC26A3, LAMB1	rs4598195-?	0.54	1E-6		1.23		Illumina [280748]	N
1405	chr7	107521403	107521404	rs6961243	33608531	Wu Y	2021-02-19	Nat Commun	GWAS of peptic ulcer disease implicates Helicobacter pylori infection, other gastrointestinal disorders and depression.	Inflammatory bowel disease	7,045 European ancestry cases, 449,282 European ancestry controls	NA	7q31.1	NR	rs6961243-G	0.59	5E-9		1.11	[NR]	NR [8546065] (imputed)	N
1405	chr7	107573267	107573268	rs881177	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	7q31.1	NR	rs881177-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
1405	chr7	107580838	107580839	rs2158836	19122664	Silverberg MS	2009-01-04	Nat Genet	Ulcerative colitis-risk loci on chromosomes 1p36 and 12q15 found by genome-wide association study.	Ulcerative colitis	1,022 European ancestry cases, 2,503 European ancestry controls	1,387 European ancestry cases, 1,115 European ancestry controls	7q31.1	DLD, SLC26A3, LAMB1	rs2158836-A	0.35	7E-6		1.21		Illumina [280748]	N
1405	chr7	107585472	107585473	rs2237687	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	7q31.1	NR	rs2237687-?	NR	4E-9				Affymetrix [~ 8270000] (imputed)	N
1405	chr7	107586517	107586518	rs757931	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	7q31.1	LAMB1	rs757931-A	NR	5E-9		0.0183179	[0.012-0.024] unit increase	Affymetrix [319769] (imputed)	N
1405	chr7	107586517	107586518	rs757931	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	7q31.1	LAMB1	rs757931-A	NR	2E-9		0.0188114	[0.013-0.025] unit increase	Affymetrix [319769] (imputed)	N
1405	chr7	107586517	107586518	rs757931	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	7q31.1	LAMB1	rs757931-A	NR	8E-9		0.0182156	[0.012-0.024] unit increase	Affymetrix [321114] (imputed)	N
1405	chr7	107586517	107586518	rs757931	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	7q31.1	LAMB1	rs757931-A	NR	3E-9		0.0187569	[0.013-0.025] unit increase	Affymetrix [321169] (imputed)	N
1405	chr7	107590737	107590738	rs2237696	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	7q31.1	LAMB1	rs2237696-G	NR	3E-9		0.0172193	[0.012-0.023] unit increase	Affymetrix [319769] (imputed)	N
1405	chr7	107590737	107590738	rs2237696	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	7q31.1	LAMB1	rs2237696-G	NR	3E-9		0.0173593	[0.012-0.023] unit increase	Affymetrix [319769] (imputed)	N
1405	chr7	107590737	107590738	rs2237696	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	7q31.1	LAMB1	rs2237696-G	NR	3E-8		0.0162663	[0.011-0.022] unit increase	Affymetrix [321114] (imputed)	N
1405	chr7	107592197	107592198	rs2072209	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	7q31.1	LAMB1	rs2072209-G	NR	3E-8		0.0302807	[0.02-0.041] unit decrease	Affymetrix [321114] (imputed)	N
1405	chr7	107592197	107592198	rs2072209	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	7q31.1	LAMB1	rs2072209-G	NR	2E-8		0.0309547	[0.02-0.042] unit decrease	Affymetrix [321169] (imputed)	N
1405	chr7	107592197	107592198	rs2072209	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	7q31.1	NR	rs2072209-A	0.9271	2E-7		0.0184	[0.012-0.025] unit increase	NR [~ 27400000] (imputed)	N
1405	chr7	107592197	107592198	rs2072209	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	7q31.1	LAMB1	rs2072209-G	0.0584063163538874	2E-6	(IGP74)	0.3125	[0.18-0.44] unit decrease	Illumina [~ 2500000] (imputed)	N
1405	chr7	107592197	107592198	rs2072209	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	7q31.1	LAMB1	rs2072209-G	0.0582759937583593	2E-7	(IGP75)	0.3382	[0.21-0.47] unit decrease	Illumina [~ 2500000] (imputed)	N
1405	chr7	107592197	107592198	rs2072209	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	7q31.1	LAMB1	rs2072209-G	0.0582759206419973	1E-8	(IGP69)	0.3742	[0.25-0.5] unit decrease	Illumina [~ 2500000] (imputed)	N
1405	chr7	107592197	107592198	rs2072209	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	7q31.1	LAMB1	rs2072209-G	0.0581724966622163	8E-6	(IGP76)	0.2906	[0.16-0.42] unit increase	Illumina [~ 2500000] (imputed)	N
1405	chr7	107594716	107594717	rs73195553	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	7q31.1	NR	rs73195553-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
1405	chr7	107595389	107595390	rs4727694	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	7q31.1	LAMB1	rs4727694-C	NR	8E-9		0.0168337	[0.011-0.023] unit increase	Affymetrix [321169] (imputed)	N
1405	chr7	107609505	107609506	rs76335902	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	7q31.1	LAMB1	rs76335902-G	NR	3E-11		0.0322766	[0.023-0.042] unit decrease	Affymetrix [319769] (imputed)	N
1405	chr7	107609505	107609506	rs76335902	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	7q31.1	LAMB1	rs76335902-G	NR	1E-11		0.0330848	[0.024-0.043] unit decrease	Affymetrix [319769] (imputed)	N
1405	chr7	107609505	107609506	rs76335902	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	7q31.1	LAMB1	rs76335902-G	NR	4E-10		0.0307402	[0.021-0.04] unit decrease	Affymetrix [321114] (imputed)	N
1405	chr7	107609505	107609506	rs76335902	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	7q31.1	LAMB1	rs76335902-G	NR	2E-12		0.0344702	[0.025-0.044] unit decrease	Affymetrix [321169] (imputed)	N
1405	chr7	107609505	107609506	rs76335902	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	7q31.1	NR	rs76335902-?	NR	6E-16				Affymetrix [~ 8270000] (imputed)	N
1405	chr7	107609505	107609506	rs76335902	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	7q31.1		rs76335902-?	NR	1E-16				NR [~ 8900000] (imputed)	N
1406	chr7	107612628	107612629	rs1544474	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	7q31.1	LAMB1	rs1544474-G	NR	6E-10		0.0176419	[0.012-0.023] unit increase	Affymetrix [321114] (imputed)	N
1406	chr7	107612628	107612629	rs1544474	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	315,284 European ancestry male individuals	NA	7q31.1	NR	rs1544474-A	0.5421	7E-21		0.0161	[0.013-0.019] unit decrease	NR [~ 27400000] (imputed)	N
1406	chr7	107613206	107613207	rs41281051	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	7q31.1	LAMB1	rs41281051-C	NR	2E-12		0.0200938	[0.014-0.026] unit increase	Affymetrix [321169] (imputed)	N
1406	chr7	107614002	107614003	rs4727695	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	7q31.1	NR	rs4727695-A	0.9	8E-22		0.029	[0.023-0.035] unit increase	Affymetrix [2446094] (imputed)	N
1406	chr7	107614002	107614003	rs4727695	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	7q31.1	NR	rs4727695-A	0.9	5E-8				Affymetrix [2446094] (imputed)	N
1406	chr7	107614002	107614003	rs4727695	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	7q31.1	NA	rs4727695-A	0.8989	2E-13		0.0215	[0.016-0.027] unit increase	NR [~ 27400000] (imputed)	N
1406	chr7	107614002	107614003	rs4727695	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex x age interaction (4df test)	up to 43,776 European ancestry men aged <50, up to 50,526 European ancestry women aged <50, up to 69,944 European ancestry men aged >50, up to 88,129 European ancestry women aged >50	NA	7q31.1	COG5, GPR22, DUS4L, BCAP29, SLC26A4-AS1, SLC26A4, CBLL1, SLC26A3, DLD, LAMB4, NRCAM, PNPLA8	rs4727695-A	0.908759033200764	2E-6				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1406	chr7	107614002	107614003	rs4727695	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	7q31.1	COG5, GPR22, DUS4L, BCAP29, SLC26A4-AS1, SLC26A4, CBLL1, SLC26A3, DLD, LAMB4, NRCAM, PNPLA8	rs4727695-A	0.908759033200764	2E-8		0.03303066	units increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1406	chr7	107614929	107614930	rs737954	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	7q31.1	NR	rs737954-?	NR	7E-10				Affymetrix [~ 8270000] (imputed)	N
1406	chr7	107616010	107616011	rs11770285	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	7q31.1	NR	rs11770285-C	0.9006	7E-24		0.0309	[0.025-0.037] unit increase	NR [~ 27400000] (imputed)	N
1406	chr7	107616067	107616068	rs11760290	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	7q31.1	NR	rs11760290-T	0.9013	1E-12		0.0218	[0.016-0.028] unit increase	NR [~ 27400000] (imputed)	N
1406	chr7	107617326	107617327	rs12705426	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	7q31.1	LAMB1	rs12705426-G	NR	7E-10		0.0176247	[0.012-0.023] unit increase	Affymetrix [319769] (imputed)	N
1406	chr7	107617326	107617327	rs12705426	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	7q31.1	LAMB1	rs12705426-G	NR	9E-10		0.0175468	[0.012-0.023] unit increase	Affymetrix [319769] (imputed)	N
1406	chr7	107627313	107627314	rs2021885	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	7q31.1	LAMB1	rs2021885-T	NR	4E-10		0.019761	[0.014-0.026] unit increase	Affymetrix [323858] (imputed)	N
1406	chr7	107627313	107627314	rs2021885	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	7q31.1	LAMB1	rs2021885-T	NR	3E-10		0.0199181	[0.014-0.026] unit increase	Affymetrix [127266] (imputed)	N
1406	chr7	107627313	107627314	rs2021885	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	7q31.1	NR	rs2021885-?	NR	1E-14				Affymetrix [~ 8270000] (imputed)	N
1406	chr7	107630481	107630482	rs2528656	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	7q31.1	LAMB1	rs2528656-T	NR	3E-8		0.0210183	[0.014-0.028] unit decrease	Affymetrix [319769] (imputed)	N
1406	chr7	107630481	107630482	rs2528656	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	7q31.1	LAMB1	rs2528656-T	NR	3E-8		0.0210939	[0.014-0.029] unit decrease	Affymetrix [319769] (imputed)	N
1406	chr7	107633170	107633171	rs2237706	31095341	Kerns SL	2019-05-16	J Natl Cancer Inst	Radiogenomics Consortium Genome-Wide Association Study Meta-analysis of Late Toxicity after Prostate Cancer Radiotherapy.	Toxicity response to radiotherapy in prostate cancer (rectal bleeding) (time to event)	3,379 European ancestry individuals	NA	7q31.1	NR	rs2237706-?	0.09	5E-7		1.94	[1.50-2.52]	Affymetrix, Illumina [~ 6000000] (imputed)	N
1406	chr7	107634988	107634989	rs6963842	30995994	Truong DT	2019-04-17	J Med Genet	Multivariate genome-wide association study of rapid automatised naming and rapid alternating stimulus in Hispanic American and African-American youth.	Rapid automised naming of letters	883 Hispanic American children, 441 African American children	NA	7q31.1	LAMB1	rs6963842-G	0.471	2E-7				Illumina [1265623]	N
1406	chr7	107634988	107634989	rs6963842	30995994	Truong DT	2019-04-17	J Med Genet	Multivariate genome-wide association study of rapid automatised naming and rapid alternating stimulus in Hispanic American and African-American youth.	Rapid automised naming and rapid alternating stimulus test performance	883 Hispanic American children, 441 African American children	NA	7q31.1	LAMB1	rs6963842-G	0.471	9E-7				Illumina [1265623]	N
1406	chr7	107634988	107634989	rs6963842	30995994	Truong DT	2019-04-17	J Med Genet	Multivariate genome-wide association study of rapid automatised naming and rapid alternating stimulus in Hispanic American and African-American youth.	Rapid alternating stimulus test for letters/numbers	883 Hispanic American children, 441 African American children	NA	7q31.1	LAMB1	rs6963842-G	0.471	2E-6				Illumina [1265623]	N
1406	chr7	107634988	107634989	rs6963842	30995994	Truong DT	2019-04-17	J Med Genet	Multivariate genome-wide association study of rapid automatised naming and rapid alternating stimulus in Hispanic American and African-American youth.	Latent naming speed	883 Hispanic American children, 441 African American children	NA	7q31.1	LAMB1	rs6963842-G	NR	7E-7		4.953	NR z score increase	Illumina [1265623]	N
1406	chr7	107643976	107643977	rs4320486	24986923	Chu M	2014-07-01	Hum Mol Genet	A genome-wide association study identifies susceptibility loci of silica-related pneumoconiosis in Han Chinese.	Pneumoconiosis in silica exposure	202 Han Chinese ancestry cases, 198 Han Chinese ancestry controls	490 Han Chinese ancestry cases, 541 Han Chinese ancestry controls	7q31.1	LAMB1	rs4320486-C	0.755	4E-6		1.69	[1.35-2.13]	Illumina [710999] (imputed)	N
1407	chr7	107748314	107748315	rs114349754	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7q31.1	NR	rs114349754-G	0.0122	2E-8	(ANP32A)	0.1166	NR unit increase	Illumina [1671387] (imputed)	N
1407	chr7	107757842	107757843	rs17155006	27236921	Rautanen A	2016-06-02	Am J Hum Genet	Polymorphism in a lincRNA Associates with a Doubled Risk of Pneumococcal Bacteremia in Kenyan Children.	Pneumococcal bacteremia	429 African ancestry cases, 2,677 African ancestry controls	113  African ancestry cases, 1,336 African ancestry controls	7q31.1	LAMB4	rs17155006-?	NR	8E-6		1.3513513	[NR]	Affymetrix [up to 10996499] (imputed)	N
1407	chr7	107782199	107782200	rs382140	21876539	Amin N	2011-08-30	Mol Psychiatry	Genome-wide association analysis of coffee drinking suggests association with CYP1A1/CYP1A2 and NRCAM.	Coffee consumption	18,176 European ancestry individuals	7,929 European ancestry individuals	7q31.1	LAMB4, NRCAM	rs382140-A	NR	4E-9		0.079	[0.05-0.11] unit increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1407	chr7	107832410	107832411	rs11974528	26674333	Traylor M	2015-12-16	Neurology	Genome-wide meta-analysis of cerebral white matter hyperintensities in patients with stroke.	White matter hyperintensities in ischemic stroke	3,670 European ancestry cases	NA	7q31.1	NRCAM	rs11974528-C	0.98	2E-6		1.53	[1.29-1.83]	Affymetrix, Illumina [7567914] (imputed)	N
1407	chr7	107833367	107833368	rs4727701	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	7q31.1		rs4727701-G	0.182192	1E-8		0.0289435	[0.019-0.039] unit increase	NR [11722792] (imputed)	N
1407	chr7	107855562	107855563	rs186314186	25663218	Verhaaren BF	2015-07-02	Circ Cardiovasc Genet	Multiethnic genome-wide association study of cerebral white matter hyperintensities on MRI.	White matter hyperintensity burden	17,936 European ancestry individuals, 1,943 African American ancestry individuals, 795 Hispanic individuals, 204 Chinese ancestry individuals, 201 Malay ancestry individuals	NA	7q31.1	NRCAM	rs186314186-C	0.01	1E-7	(EA)			Affymetrix, Illumina [14227402] (imputed)	N
1408	chr7	107917311	107917311	rs201179738	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	7q31.1		rs201179738-CT	NR	4E-8		0.0218	[0.014-0.03] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1408	chr7	107936904	107936905	rs117789043	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7q31.1	NR	rs117789043-T	0.01045	6E-10	(DHTKD1)	0.08053	NR unit increase	Illumina [1671387] (imputed)	N
1408	chr7	107973296	107973297	rs6975557	23593202	Ran S	2013-04-04	PLoS One	Bivariate genome-wide association analyses identified genes with pleiotropic effects for femoral neck bone geometry and age at menarche.	Femoral neck bone geometry and menarche (age at onset)	1,728 European ancestry individuals	501 European ancestry individuals, 826 Chinese ancestry individuals	7q31.1	NRCAM	rs6975557-?	NR	5E-8	(AAM-W, EA)			Affymetrix [760794]	N
1408	chr7	107992581	107992582	rs10487851	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	7q31.1	NR	rs10487851-?		6E-14	(NRCAM)	0.2565	[NR] unit increase	Illumina [NR]	N
1409	chr7	108082374	108082375	rs10276271	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	7q31.1		rs10276271-A	0.23	3E-8		5.52	z score increase	Affymetrix [9061022] (imputed)	N
1409	chr7	108083504	108083505	rs1034825	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	7q31.1	NRCAM	rs1034825-T	0.5340625	6E-6	(NRCAM, 5109_24_3)	0.110110246	[0.063-0.158] unit decrease	Illumina [> 1000000] (imputed)	N
1409	chr7	108090254	108090255	rs17423264	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	7q31.1	NRCAM	rs17423264-C		5E-8		0.366	unit increase	Affymetrix [at least 2696785] (imputed)	N
1409	chr7	108090254	108090255	rs17423264	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	7q31.1	NRCAM	rs17423264-C		5E-6		0.184	unit increase	Affymetrix [at least 2696785] (imputed)	N
1409	chr7	108111739	108111740	rs13238345	34162658	Quinn MC	2021-06-23	Cancer Epidemiol Biomarkers Prev	Identification of a locus near ULK1 associated with progression-free survival in ovarian cancer.	Progression free survival in serous epithelial ovarian cancer	4,037 European ancestry individuals	NA	7q31.1	NR	rs13238345-T		6E-6		0.3228	[0.18-0.46] unit increase	Illumina [12770451] (imputed)	N
1410	chr7	108157221	108157222	rs188593748	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	7q31.1	PNPLA8	rs188593748-A	0.999	8E-7	(AA)	0.451	unit increase	Illumina [NR] (imputed)	N
1410	chr7	108194433	108194434	rs185717996	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	7q31.1	NR	rs185717996-?	NR	6E-11		1.21237	[0.85-1.58] unit increase	NR [13958389] (imputed)	N
1410	chr7	108263539	108263540	rs10953577	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	7q31.1	DNAJB9	rs10953577-T	0.623364	3E-9		0.00858308	[0.0057-0.0114] unit decrease	Affymetrix [12370749]	N
1411	chr7	108283605	108283606	rs10480450	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	7q31.1		rs10480450-A	0.9341	2E-8		0.0158	[0.01-0.021] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1411	chr7	108283858	108283859	rs78270331	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	7q31.1		rs78270331-T	0.0648	6E-9	(conditional-joint)	0.0165	[0.011-0.022] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1412	chr7	108438326	108438327	rs720895	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Letter-number span reordering	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	7q31.1	C7orf66	rs720895-G	NR	5E-6		0.8168795	[0.47-1.16] unit increase	Illumina [> 6200000] (imputed)	N
1412	chr7	108456803	108456804	rs6971377	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7q31.1	NR	rs6971377-T	0.01916	3E-8	(ARHGDIB)	0.06225	NR unit increase	Illumina [1671387] (imputed)	N
1412	chr7	108456803	108456804	rs6971377	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7q31.1	NR	rs6971377-T	0.01916	3E-8	(ARHGDIA)	0.07976	NR unit increase	Illumina [1671387] (imputed)	N
1412	chr7	108456803	108456804	rs6971377	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7q31.1	NR	rs6971377-T	0.01916	1E-9	(SH3BGRL)	0.01652	NR unit increase	Illumina [1671387] (imputed)	N
1412	chr7	108498833	108498834	rs13231248	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	7q31.1	DNAJB9	rs13231248-?	NR	4E-7	(gentisic acid)	0.5819578	[0.36-0.81] unit increase	Affymetrix [at least 2500000] (imputed)	N
1413	chr7	108544460	108544461	rs1404697	22006218	Yoon D	2011-10-18	Hum Genet	Large-scale genome-wide association study of Asian population reveals genetic factors in FRMD4A and other loci influencing smoking initiation and nicotine dependence.	Smoking behavior	8,842 Korean ancestry individuals	1,366 African American individuals, 671 European ancestry individuals	7q31.1	intergenic	rs1404697-?	NR	8E-6	(Heaviness of Smoking Index)			Affymetrix [352228]	N
1413	chr7	108544460	108544461	rs1404697	22006218	Yoon D	2011-10-18	Hum Genet	Large-scale genome-wide association study of Asian population reveals genetic factors in FRMD4A and other loci influencing smoking initiation and nicotine dependence.	Smoking behavior	8,842 Korean ancestry individuals	1,366 African American individuals, 671 European ancestry individuals	7q31.1	intergenic	rs1404697-?	NR	5E-6	(Fagerstrom test for nicotine dependence)			Affymetrix [352228]	N
1413	chr7	108548659	108548660	rs848353	22006218	Yoon D	2011-10-18	Hum Genet	Large-scale genome-wide association study of Asian population reveals genetic factors in FRMD4A and other loci influencing smoking initiation and nicotine dependence.	Smoking behavior	8,842 Korean ancestry individuals	1,366 African American individuals, 671 European ancestry individuals	7q31.1	PNPLA8, THAP5, DNAJB9, C7orf66, LOC154907	rs848353-?	NR	9E-7	(Heaviness of Smoking Index)			Affymetrix [352228]	N
1413	chr7	108548659	108548660	rs848353	22006218	Yoon D	2011-10-18	Hum Genet	Large-scale genome-wide association study of Asian population reveals genetic factors in FRMD4A and other loci influencing smoking initiation and nicotine dependence.	Smoking behavior	8,842 Korean ancestry individuals	1,366 African American individuals, 671 European ancestry individuals	7q31.1	PNPLA8, THAP5, DNAJB9, C7orf66, LOC154907	rs848353-?	NR	3E-7	(Fagerstrom test for nicotine dependence)			Affymetrix [352228]	N
1413	chr7	108548659	108548660	rs848353	22006218	Yoon D	2011-10-18	Hum Genet	Large-scale genome-wide association study of Asian population reveals genetic factors in FRMD4A and other loci influencing smoking initiation and nicotine dependence.	Smoking behavior	8,842 Korean ancestry individuals	1,366 African American individuals, 671 European ancestry individuals	7q31.1	PNPLA8, THAP5, DNAJB9, C7orf66, LOC154907	rs848353-?	NR	2E-6	(Cigarettes smoked per day)			Affymetrix [352228]	N
1413	chr7	108625184	108625185	rs670501	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	7q31.1	NR	rs670501-T	0.2133	7E-13		1.054	[1.04-1.07]	Affymetrix, Illumina [NR] (imputed)	N
1414	chr7	108763668	108763669	rs17156495	27958378	Floyd JS	2016-12-13	Pharmacogenomics J	Large-scale pharmacogenomic study of sulfonylureas and the QT, JT and QRS intervals: CHARGE Pharmacogenomics Working Group.	JT interval (sulfonylurea treatment interaction)	2,095 European ancestry exposed individuals, 42,907 European ancestry unexposed individuals, 1,167 African American exposed individuals, 10,564 African American unexposed individuals, 794 Hispanic/Latino American exposed individuals, 14,330 Hispanic/Latino American unexposed individuals	NA	7q31.1	THAP5, PNPLA8	rs17156495-?	NR	5E-7		8.5	[5.17-11.83] ms decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1416	chr7	108952018	108952019	rs139370935	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	7q31.1	NR	rs139370935-?	NR	5E-7		1.34078	[0.82-1.87] unit increase	NR [13958389] (imputed)	N
1417	chr7	109064119	109064120	rs12705587	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	7q31.1	NR	rs12705587-C	0.207	1E-7		0.00713009	[0.0045-0.0098] unit decrease	NR [9732723] (imputed)	N
1417	chr7	109096451	109096452	rs76810409	31260374	Pedergnana V	2019-07-01	J Interferon Cytokine Res	Impact of IFNL4 Genetic Variants on Sustained Virologic Response and Viremia in Hepatitis C Virus Genotype 3 Patients.	Response to direct-acting antiviral treatment in hepatitis C virus genotype 3	325 European, Asian and unknown ancestry responders, 84 European, Asian and unknown ancestry non-responders	NA	7q31.1	NR	rs76810409-?	NR	1E-6		Infinity	NR	Affymetrix [~ 18000000] (imputed)	N
1417	chr7	109099918	109099919	rs58104186	31926635	Coleman JRI	2019-11-01	Biol Psychiatry	The Genetics of the Mood Disorder Spectrum: Genome-wide Association Analyses of More Than 185,000 Cases and 439,000 Controls.	Bipolar disorder or major depressive disorder	164,933 European ancestry major depressive disorder cases, 20,352 European ancestry bipolar disorder cases, 439,741 European ancestry controls	NA	7q31.1	NR	rs58104186-A	NR	7E-9		1.03	[1.02-1.04]	NR [NR] (imputed)	N
1417	chr7	109099918	109099919	rs58104186	30718901	Howard DM	2019-02-04	Nat Neurosci	Genome-wide meta-analysis of depression identifies 102 independent variants and highlights the importance of the prefrontal brain regions.	Depression	118,811 European ancestry cases, 327,427 European ancestry controls, 127,552 cases, 233,763 controls	414,055 European ancestry cases, 892,299 European ancestry controls	7q31.1	NR	rs58104186-A	0.4689	4E-18		1.019	[1.015-1.024]	NR [8098588] (imputed)	N
1417	chr7	109100167	109100168	rs12705593	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	7q31.1		rs12705593-?	NR	5E-12		0.0209	unit decrease	NR [NR]	N
1417	chr7	109100413	109100414	rs4730387	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	7q31.1	Intergenic	rs4730387-?		3E-8				NR [6786993] (imputed)	N
1417	chr7	109102854	109102855	rs11561993	32959083	Adewuyi EO	2020-09-21	Hum Genet	Genetic analysis of endometriosis and depression identifies shared loci and implicates causal links with gastric mucosa abnormality.	Endometriosis or depression (pleiotropy)	17,054 endometriosis cases, 170,756 European ancestry depression cases, 191,858 controls, 329,443 European ancestry controls	NA	7q31.1	NR	rs11561993-T		2E-9		0.0244869	[0.016-0.033] unit increase	NR [6694342]	N
1417	chr7	109103911	109103912	rs12705595	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	7q31.1	FLJ00325	rs12705595-G	0.626631	2E-8		0.0110687	[0.0072-0.015] unit decrease	Affymetrix [NR] (imputed)	N
1417	chr7	109105610	109105611	rs12666117	29700475	Wray NR	2018-04-26	Nat Genet	Genome-wide association analyses identify 44 risk variants and refine the genetic architecture of major depression.	Depression	135,458 European ancestry cases, 344,901 European ancestry controls	NA	7q31.1	intergenic	rs12666117-A	0.47	1E-8		1.03	[1.02-1.04]	NR [9622763] (imputed)	N
1417	chr7	109128059	109128060	rs62471080	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	7q31.1	NR	rs62471080-?		4E-9		0.0127843	[0.0085-0.017] unit decrease	Affymetrix [19400418] (imputed)	N
1417	chr7	109132213	109132214	rs57723803	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms (MTAG)	354,862 European ancestry individuals	NA	7q31.1	NR	rs57723803-C	0.4614	2E-8		0.0122	[0.0079-0.0165] unit increase	Illumina [NR] (imputed)	N
1417	chr7	109152522	109152523	rs10231446	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Major depressive disorder (MTAG)	at least 170,756 European ancestry cases, at least 329,443 European ancestry controls	NA	7q31.1	NR	rs10231446-T	0.5506	3E-8		0.022884281	[0.015-0.031] unit decrease	NR [NR]	N
1417	chr7	109152710	109152711	rs10953615	22318345	Cha PC	2012-02-09	J Hum Genet	A genome-wide association study identifies SNP in DCC is associated with gallbladder cancer in the Japanese population.	Gallbladder cancer	41 Japanese ancestry cases, 866 Japanese ancestry controls	30 Japanese ancestry cases, 898 Japanese ancestry controls	7q31.1	NR	rs10953615-C	0.11	9E-6		7.51	[3.08-18.30]	Illumina [425706] (imputed)	N
1417	chr7	109165003	109165004	rs4265114	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	7q31.1	NR	rs4265114-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
1417	chr7	109173129	109173130	rs1524277	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	7q31.1		rs1524277-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1417	chr7	109173372	109173373	rs10953620	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Subjective well-being (MTAG)	388,538 European ancestry individuals	NA	7q31.1	NR	rs10953620-A	0.5218	5E-8		0.0101	[0.0066-0.0136] unit increase	Illumina [NR] (imputed)	N
1417	chr7	109173955	109173956	rs12705613	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Depression	at least 5,919 European ancestry cases, at least 130,691 European ancestry controls	634,037 European ancestry cases, 1,308,690 European ancestry controls	7q31.1	AC073071.1	rs12705613-T	0.5	8E-14		0.016727647	[0.012-0.022] unit increase	NR [9417325] (imputed)	N
1418	chr7	109197066	109197067	rs2396133	34187846	Ong JS	2021-06-29	Gut	Multitrait genetic association analysis identifies 50 new risk loci for gastro-oesophageal reflux, seven new loci for Barrett's oesophagus and provides insights into clinical heterogeneity in reflux diagnosis.	Gastroesophageal reflux disease	129,080 European ancestry cases, 473,524 European ancestry controls	462,753 cases, 1,127,474 controls	7q31.1	NR	rs2396133-A	0.52	1E-9		0.029	unit decrease	NR [2324712] (imputed)	N
1418	chr7	109197066	109197067	rs2396133	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	7q31.1	NR	rs2396133-G	NR	1E-8		0.01326	[0.0087-0.0178] unit increase	Affymetrix [10847151] (imputed)	N
1418	chr7	109200330	109200331	rs1357685	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	7q31.1	NR	rs1357685-T	0.4735	1E-8		1.034	[1.02-1.05]	Affymetrix, Illumina [NR] (imputed)	N
1418	chr7	109214138	109214139	rs1721447	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	7q31.1	NA	rs1721447-T	0.5096	4E-9		0.01	[0.0067-0.0133] unit decrease	NR [~ 27400000] (imputed)	N
1418	chr7	109218982	109218983	rs1851823	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	7q31.1		rs1851823-A	NR	8E-10		0.0144	[0.0099-0.0189] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1418	chr7	109218982	109218983	rs1851823	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		7q31.1	FLJ00325	rs1851823-C	0.511629	4E-8		0.00753654	[0.0048-0.0102] unit decrease	Affymetrix [12370749]	N
1418	chr7	109270170	109270171	rs62473335	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Cardio-cerebrovascular disease in diabetes mellitus	497 Korean ancestry cases, 4,815 Korean ancestry controls	NA	7q31.1		rs62473335-C	0.01981	9E-6		2.373	[1.62-3.476]	Affymetrix [7975321] (imputed)	N
1419	chr7	109341951	109341952	rs2692877	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	QT interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	7q31.1	NR	rs2692877-?	NR	5E-6				Affymetrix [5486770] (imputed)	N
1419	chr7	109376730	109376731	rs146842860	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	7q31.1	EIF3IP1	rs146842860-?		9E-6	(dominant)	0.331	[NR] unit increase	Illumina [1492601] (imputed)	N
1420	chr7	109563563	109563564	rs149662848	32238385	Nakayama A	2020-04-01	Ann Rheum Dis	Subtype-specific gout susceptibility loci and enrichment of selection pressure on ABCG2 and ALDH2 identified by subtype genome-wide meta-analyses of clinically defined gout patients.	Renal underexcretion gout	654 Japanese ancestry male cases, 4,554 Japanese ancestry male controls	NA	7q31.1	C7orf66, EIF3IP1	rs149662848-C	0.017	4E-7		2.49	[1.75-3.53]	Illumina [7206774] (imputed)	N
1421	chr7	109590910	109590911	rs2107167	28060188	Hamet P	2017-01-16	J Hypertens	PROX1 gene CC genotype as a major determinant of early onset of type 2 diabetes in slavic study participants from Action in Diabetes and Vascular Disease: Preterax and Diamicron MR Controlled Evaluation study.	Type 2 diabetes (age of onset)	2,307 Celtic ancestry individuals, 1,102 Slavic ancestry individuals	NA	7q31.1	EIF3IP1	rs2107167-?	NR	8E-6	(Celtic)			Affymetrix [5045527] (imputed)	N
1422	chr7	109720576	109720577	rs79379259	34074324	Wan JY	2021-06-01	Diabetol Metab Syndr	Genome-wide association analysis of metabolic syndrome quantitative traits in the GENNID multiethnic family study.	Fasting insulin	281 African American individuals from 73 families, 516 European ancestry individuals from 75 families, 125 Japanese American individuals from 15 families, 598 Mexican American individuals from 96 families	NA	7q31.1	EIF3IP1, IMMP2L	rs79379259-A	0.03	6E-7	(Hispanic/Latino)	0.7	[0.43-0.97] unit decrease	Illumina [up to 13042663] (imputed)	N
1422	chr7	109757017	109757018	rs73199888	26926045	Adhikari K	2016-03-01	Nat Commun	A genome-wide association scan in admixed Latin Americans identifies loci influencing facial and scalp hair features.	Scalp hair shape	6,357 Latin American individuals	NA	7q31.1	EIF3IP1	rs73199888-?	NR	2E-7				Illumina [9143600] (imputed)	N
1422	chr7	109757107	109757108	rs6948305	33841421	Li J	2021-03-25	Front Immunol	Variants at the MHC Region Associate With Susceptibility to <i>Clostridioides difficile</i> Infection: A Genome-Wide Association Study Using Comprehensive Electronic Health Records.	Clostridioides difficle infection in antibiotics-users	587 European ancestry cases, 3,166 European ancestry controls	NA	7q31.1	NR	rs6948305-G	0.014	4E-7		2.72	[1.95-3.67]	Illumina [64973696] (imputed)	N
1422	chr7	109777797	109777798	rs80054135	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Reaction time	330,024 British ancestry individuals	NA	7q31.1		rs80054135-?	NR	4E-8				NR [7857346] (imputed)	N
1422	chr7	109777797	109777798	rs80054135	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	7q31.1	RPL3P8	rs80054135-?	NR	2E-8		0.009888	[0.0064-0.0134] unit decrease	Affymetrix [805426] (imputed)	N
1422	chr7	109782570	109782571	rs59406683	25778476	Jun G	2015-03-17	Mol Psychiatry	A novel Alzheimer disease locus located near the gene encoding tau protein.	Alzheimer's disease in APOE e4+ carriers	10,352 cases, 9,207 controls	1,250 European ancestry cases, 536 European ancestry controls	7q31.1	RPL3P8, IMMP2L	rs59406683-A	0.89	6E-6		1.2048193	[1.11-1.3]	NR [NR]	N
1423	chr7	109943766	109943767	rs38758	31164008	Mullins N	2019-06-05	Am J Psychiatry	GWAS of Suicide Attempt in Psychiatric Disorders and Association With Major Depression Polygenic Risk Scores.	Suicide attempts in bipolar disorder or schizophrenia	3,264 European ancestry attempters with bipolar disorder, 5,500 European ancestry nonattempters with bipolar disorder, 1,683 European ancestry attempters with schizophrenia, 2,946 European ancestry nonattempters with schizophrenia	NA	7q31.1	NR	rs38758-A	0.44	9E-6		1.12	1.07-1.18	NR [at least 8807005] (imputed)	N
1424	chr7	109992170	109992171	rs34723276	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls		VCAM1	rs34723276-A	NR	1E-22		1.0973	NR	Affymetrix, Illumina [8278136] (imputed)	N
1424	chr7	110014521	110014522	rs115595252	30120083	Ferguson A	2018-08-14	EBioMedicine	Genome-Wide Association Study of Circadian Rhythmicity in 71,500 UK Biobank Participants and Polygenic Association with Mood Instability.	Relative amplitude of rest-activity cycles	77,440 European ancestry individuals	NA	7q31.1	Intergenic	rs115595252-?	NR	4E-6		0.008	unit increase	Affymetrix [7969123] (imputed)	N
1424	chr7	110047470	110047471	rs6968385	18937294	Lasky-Su J	2008-12-05	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association scan of the time to onset of attention deficit hyperactivity disorder.	Attention deficit hyperactivity disorder (time to onset)	930 European ancestry trios	NA	7q31.1	intergenic	rs6968385-T	NR	2E-6	(earlier onset)			Perlegen [429981]	N
1424	chr7	110047963	110047964	rs4730430	23453885	Smoller JW	2013-02-27	Lancet	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NA	7q31.1	intergenic	rs4730430-T		3E-6	(Modelling analysis)	1.06	[1.03-1.08]	NR [1252901] (imputed)	N
1424	chr7	110048892	110048893	rs211829	29483656	Pardinas AF	2018-02-26	Nat Genet	Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.	Schizophrenia	40,675 European ancestry cases, 64,643 European ancestry controls	1,651 European ancestry cases, 4,111 cases, 142,717 European ancestry controls, 11,507 controls	7q31.1	IMMP2L	rs211829-?	NR	2E-9		1.061	[1.04-1.08]	Illumina [8000000] (imputed)	N
1424	chr7	110048892	110048893	rs211829	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	7q31.1	NR	rs211829-T	NR	7E-7		1.06	[NR]	Illumina [7158791] (imputed)	N
1424	chr7	110048892	110048893	rs211829	25056061	Ripke S	2014-07-22	Nature	Biological insights from 108 schizophrenia-associated genetic loci.	Schizophrenia	32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	1,513 European ancestry cases, 66,236 European ancestry controls	7q31.1	IMMP2L	rs211829-T	0.628	4E-8		1.061	[1.039-1.083]	Affymetrix, Illumina [9005918] (imputed)	N
1424	chr7	110069014	110069015	rs6969410	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	7q31.1	Intergenic	rs6969410-?		5E-9				NR [6786993] (imputed)	N
1424	chr7	110073754	110073755	rs7807720	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	7q31.1	LOC10041978	rs7807720-A	NR	3E-6	(EA)	1.0538	[1.03-1.08]	Illumina [6627481] (imputed)	N
1424	chr7	110073754	110073755	rs7807720	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	7q31.1	LOC10041978	rs7807720-A	NR	2E-8		1.058	[1.04-1.08]	Illumina [6627481] (imputed)	N
1424	chr7	110073754	110073755	rs7807720	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	7q31.1	intergenic	rs7807720-A	NR	1E-7		1.054	[1.03-1.07]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1424	chr7	110074275	110074276	rs9656169	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	7q31.1	NR	rs9656169-?	NR	3E-8		1.0536964	[1.04-1.07]	Affymetrix, Illumina [12447948] (imputed)	N
1424	chr7	110074275	110074276	rs9656169	31268507	Periyasamy S	2019-07-03	JAMA Psychiatry	Association of Schizophrenia Risk With Disordered Niacin Metabolism in an Indian Genome-wide Association Study.	Schizophrenia	816 Indian ancestry cases, 900 Indian ancestry controls, 505 Indian ancestry cases and 871 Indian ancestry controls from 405 families, up to 36,989 European and unknown ancestry cases, up to 113,075 European and unknown ancestry controls	NA	7q31.1	NR	rs9656169-?	NR	8E-7				Illumina [up to 5582932] (imputed)	N
1424	chr7	110074275	110074276	rs9656169	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	7q31.1	intergenic	rs9656169-?		3E-8		1.0526316	[1.04-1.08]	Affymetrix, Illumina [NR]	N
1424	chr7	110076139	110076140	rs211800	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	7q31.1	AC003088.1, IMMP2L	rs211800-G	NR	3E-6	(sleep onset, weekdays)	0.1994	[0.12-0.28] unit increase	Affymetrix [7141204] (imputed)	N
1425	chr7	110178949	110178950	rs2966422	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Bipolar disorder (MTAG)	65,682 individuals	NA	7q31.1	NR	rs2966422-?		4E-8				NR [520857]	N
1425	chr7	110189943	110189944	rs2966424	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Bipolar disorder (MTAG)	at least 20,352 European ancestry cases, at least 31,358 European ancestry controls	NA	7q31.1	NR	rs2966424-A	0.9006	3E-8		0.09766744	[0.063-0.132] unit increase	NR [NR]	N
1425	chr7	110197411	110197412	rs13231398	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	7q31.1	IMMP2L	rs13231398-G	0.889	5E-6		1.0863189		NR [9372253] (imputed)	N
1425	chr7	110197411	110197412	rs13231398	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar I disorder	14,879 European ancestry cases, 31,358 European ancestry controls	NA	7q31.1	IMMP2L	rs13231398-G	0.889	2E-7		1.1363249	[NR]	NR [9372253] (imputed)	N
1426	chr7	110232563	110232564	rs1917717	34737425	Mansour Aly D	2021-11-04	Nat Genet	Genome-wide association analyses highlight etiological differences underlying newly defined subtypes of diabetes.	Mild age-related type 2 diabetes	2,861 Scandinavian ancestry cases, 2,744 Scandinavian ancestry controls	NA	7q31.1	DOCK4, LRNN3, IMMP2L	rs1917717-A	0.41598	7E-6		0.833	[0.769 - 0.902]	Illumina [5397657] (imputed)	N
1426	chr7	110340973	110340974	rs17157913	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	7q31.1	NR	rs17157913-?	NR	2E-6				Affymetrix [5486770] (imputed)	N
1427	chr7	110459160	110459163	rs148352040	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Tumor necrosis factor beta levels	1,559 Finnish ancestry individuals	NA	7q31.1	NR	rs148352040-TATA		7E-6		0.2442	[0.14-0.35] SD units decrease	NR [10700000] (imputed)	N
1427	chr7	110467220	110467221	rs10279573	19734545	Need AC	2009-09-04	Hum Mol Genet	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA	7q31.1	IMMP2L	rs10279573-?	0.1446	3E-6	(IED)			Illumina [475971]	N
1428	chr7	110602791	110602792	rs7795011	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (father's age at death)	309,383 European ancestry individuals	NA	7q31.1	NR	rs7795011-C	NR	6E-6		0.01189	[0.0068-0.017] unit decrease	Illumina [541614]	N
1429	chr7	110672703	110672704	rs67679818	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	7q31.1	IMMP2L	rs67679818-C	0.417621	5E-8		0.00779682	[0.005-0.0106] unit increase	Affymetrix [12370749]	N
1429	chr7	110741576	110741577	rs17439799	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	7q31.1	IMMP2L	rs17439799-C	NR	1E-8	(EA)	1.0672358	[1.05-1.09]	Illumina [6627481] (imputed)	N
1430	chr7	110775398	110775399	rs73201076	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	7q31.1	NR	rs73201076-C	NR	1E-6		1.0869565	[NR]	Illumina [7158791] (imputed)	N
1430	chr7	110858267	110858268	rs214467	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	7q31.1	IMMP2L	rs214467-A	NR	5E-12	(EA)	1.0833	[1.06-1.11]	Illumina [6627481] (imputed)	N
1430	chr7	110858267	110858268	rs214467	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	7q31.1	IMMP2L	rs214467-A	NR	5E-11		1.068	[1.05-1.09]	Illumina [6627481] (imputed)	N
1430	chr7	110858267	110858268	rs214467	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	7q31.1	IMMP2L, LRRN3	rs214467-A	NR	8E-13		1.073	[1.05-1.09]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1430	chr7	110867534	110867535	rs214475	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	7q31.1	NR	rs214475-?	NR	4E-14		1.0703658	[1.05-1.09]	Affymetrix, Illumina [12447948] (imputed)	N
1431	chr7	110898914	110898915	rs13240464	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	7q31.1	IMMP2L	rs13240464-?		6E-11				NR [6786993] (imputed)	N
1431	chr7	110898914	110898915	rs13240464	31268507	Periyasamy S	2019-07-03	JAMA Psychiatry	Association of Schizophrenia Risk With Disordered Niacin Metabolism in an Indian Genome-wide Association Study.	Schizophrenia	816 Indian ancestry cases, 900 Indian ancestry controls, 505 Indian ancestry cases and 871 Indian ancestry controls from 405 families, up to 36,989 European and unknown ancestry cases, up to 113,075 European and unknown ancestry controls	NA	7q31.1	NR	rs13240464-?	NR	2E-12				Illumina [up to 5582932] (imputed)	N
1431	chr7	110898914	110898915	rs13240464	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	7q31.1	IMMP2L, LRRN3	rs13240464-T		2E-11		1.07	[1.05-1.09]	Affymetrix, Illumina [NR]	N
1431	chr7	110898914	110898915	rs13240464	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	7q31.1	NR	rs13240464-T	NR	3E-13		1.08	[NR]	Illumina [7158791] (imputed)	N
1431	chr7	110898914	110898915	rs13240464	25056061	Ripke S	2014-07-22	Nature	Biological insights from 108 schizophrenia-associated genetic loci.	Schizophrenia	32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	1,513 European ancestry cases, 66,236 European ancestry controls	7q31.1	IMMP2L	rs13240464-T	0.647	3E-13		1.083	[1.060-1.106]	Affymetrix, Illumina [9005918] (imputed)	N
1431	chr7	110921318	110921319	rs10260040	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Schizophrenia (MTAG)	at least 33,640 European ancestry cases, at least 43,456 European ancestry controls	NA	7q31.1	NR	rs10260040-A	0.4056	3E-10		0.07412483	[0.051-0.097] unit decrease	NR [NR]	N
1431	chr7	110939652	110939653	rs253376	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	7q31.1		rs253376-C	0.528	8E-12		0.008	[0.006-0.01] unit decrease	NR [NR] (imputed)	N
1431	chr7	110976263	110976264	rs12705761	29483656	Pardinas AF	2018-02-26	Nat Genet	Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.	Schizophrenia	40,675 European ancestry cases, 64,643 European ancestry controls	1,651 European ancestry cases, 4,111 cases, 142,717 European ancestry controls, 11,507 controls	7q31.1	IMMP2L	rs12705761-?	NR	5E-11		1.068	[1.05-1.09]	Illumina [8000000] (imputed)	N
1431	chr7	110977700	110977701	rs12539177	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs ADHD (ordinary least squares (OLS))	40,675 schizophrenia cases, 19,099 ADHD cases	NA	7q31.1		rs12539177-?	NR	3E-10		0.0216	NR unit decrease	NR [4428082] (imputed)	N
1431	chr7	110999502	110999503	rs37658	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	7q31.1	NR	rs37658-G	0.481	3E-16		0.00905502	[0.0069-0.0112] unit increase	NR [9732723] (imputed)	N
1431	chr7	110999502	110999503	rs37658	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	7q31.1	NR	rs37658-?	NR	4E-6		0.008109	[0.0047-0.0115] unit decrease	Affymetrix [805426] (imputed)	N
1432	chr7	111025947	111025948	rs12532143	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Schizophrenia (MTAG)	940,613 European ancestry individuals	NA			rs12532143-?	NR	1E-10				NR [2625067]	N
1432	chr7	111025947	111025948	rs12532143	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	65,967 individuals	NA		NR	rs12532143-?		2E-10				NR [8377093]	N
1432	chr7	111025947	111025948	rs12532143	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA		IMMP2L	rs12532143-?	NR	4E-12		0.014428311	[0.01-0.019] unit decrease	NR [7306098]	N
1432	chr7	111059885	111059886	rs38748	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	7q31.1	NR	rs38748-G	0.476	5E-11		0.00960526	[0.0067-0.0125] unit decrease	NR [9732723] (imputed)	N
1432	chr7	111069945	111069946	rs38751	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs anorexia nervosa (ordinary least squares (OLS))	40,675 schizophrenia cases, 16,992 anorexia nervosa cases	NA	7q31.1		rs38751-?	NR	1E-8		0.0188	NR unit decrease	NR [4425810] (imputed)	N
1432	chr7	111078911	111078912	rs38752	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	7q31.1	IMMP2L	rs38752-T	NR	5E-12	(EA)	1.0822511	[1.06-1.1]	Illumina [6627481] (imputed)	N
1432	chr7	111086069	111086070	rs189391261	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid respiratory support vs population)	495 European ancestry cases, 680,440 European ancestry controls, 102 Hispanic or Latin American cases, 94,330 Hispanic or Latin American controls, 39 Black or African American cases, 22,410 Black or African American controls	NA	7q31.1		rs189391261-?	NR	6E-6		0.8164631	[0.46-1.17] unit increase	Illumina [9842460] (imputed)	N
1432	chr7	111092477	111092478	rs10282292	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	7q31.1		rs10282292-C	0.362	6E-10		0.013	[0.0091-0.0169] unit increase	Affymetrix [up to 90000000] (imputed)	N
1432	chr7	111100584	111100585	rs11766326	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	7q31.1	NR	rs11766326-C	0.506	2E-11		0.01754396	[0.012-0.023] unit decrease	NR [~ 10000000] (imputed)	N
1432	chr7	111134056	111134057	rs12668724	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	67,764 individuals	NA	7q31.1	NR	rs12668724-?		4E-10				NR [8377093]	N
1433	chr7	111172633	111172634	rs2529491	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	7q31.1		rs2529491-?	NR	2E-7				NR [~ 8900000] (imputed)	N
1434	chr7	111308301	111308302	rs75215979	33594131	Donati G	2021-02-16	Sci Rep	Evidence for specificity of polygenic contributions to attainment in English, maths and science during adolescence.	Academic attainment (maths)	6,017 European ancestry adolescents	NA	7q31.1	NR	rs75215979-T	NR	9E-6		0.216	[0.12-0.31] unit increase	Illumina [6319684] (imputed)	N
1434	chr7	111328396	111328397	rs10155855	27322543	Gormley P	2016-06-20	Nat Genet	Meta-analysis of 375,000 individuals identifies 38 susceptibility loci for migraine.	Migraine	59,674 European ancestry cases, 316,078 European ancestry controls	NA	7q31.1	DOCK4, IMMP2L	rs10155855-T	0.05	2E-8		1.08	[1.05-1.12]	Affymetrix, Illumina, Perlegen [8094889] (imputed)	N
1434	chr7	111360678	111360679	rs76672197	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	7q31.1		rs76672197-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1434	chr7	111374060	111374061	rs1419748	34177453	Swart PC	2021-06-10	Front Neurosci	A Genome-Wide Association Study and Polygenic Risk Score Analysis of Posttraumatic Stress Disorder and Metabolic Syndrome in a South African Population.	Post-traumatic stress disorder	260 South African Colored cases, 343 South African Colored controls	NA	7q31.1		rs1419748-?	NR	3E-6		0.2636	unit increase	Illumina [11927194] (imputed)	N
1434	chr7	111385670	111385671	rs4727760	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Total intracranial volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	7q31.1	DOCK4	rs4727760-?		7E-6				Illumina [4322238] (imputed)	N
1434	chr7	111386215	111386216	rs6951280	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Type 2 diabetes	approximately 459,000 European ancestry individuals	NA	7q31.1		rs6951280-?	NR	8E-8				NR [~ 8900000] (imputed)	N
1435	chr7	111451658	111451659	rs2074114	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	7q31.1	NR	rs2074114-?	NR	3E-6				Affymetrix [5486770] (imputed)	N
1435	chr7	111499580	111499581	rs112306042	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7q31.1	NR	rs112306042-T	0.01742	9E-10	(CYP2C19)	0.06712	NR unit increase	Illumina [1671387] (imputed)	N
1435	chr7	111511137	111511138	rs17158930	25944848	Athanasiu L	2015-05-05	J Psychopharmacol	Genome-wide association study identifies common variants associated with pharmacokinetics of psychotropic drugs.	Pharmacokinetics of antidepressant drugs in severe mental disorder (concentration dose ratio)	Up to 320 European ancestry cases	NA	7q31.1	intergenic	rs17158930-G	0.193	3E-7		0.3082	[NR] unit decrease	Affymetrix [686595]	N
1435	chr7	111527559	111527560	rs10255299	22788528	Kong M	2012-07-13	Int J Immunogenet	Genetic associations with C-reactive protein level and white blood cell count in the KARE study.	C-reactive protein and white blood cell count	8,722 individuals	NA	7q31.1	DOCK4	rs10255299-G	0.013	7E-11	(CRP)	0.241	[NR] mg/dl increase	Affymetrix [1701735] (imputed)	N
1436	chr7	111580165	111580166	rs144867634	33541420	Bone WP	2021-02-04	Alzheimers Res Ther	Multi-trait association studies discover pleiotropic loci between Alzheimer's disease and cardiometabolic traits.	Alzheimer's disease or diastolic blood pressure (pleiotropy)	1,006,863 individuals with diastolic blood pressure measurements, 71,880 Alzheimer's disease cases, 383,378 controls	NA	7q31.1		rs144867634-T	0.98	8E-8				NR [NR]	N
1436	chr7	111580165	111580166	rs144867634	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	7q31.1	NR	rs144867634-C	NR	2E-10		0.0504	[0.035-0.066] unit decrease	Affymetrix [9000000] (imputed)	N
1436	chr7	111580165	111580166	rs144867634	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	7q31.1		rs144867634-T	0.9748	3E-8		0.24239604	[0.16-0.33] mmHg increase	Affymetrix, Illumina [242866] (imputed)	N
1436	chr7	111624088	111624089	rs149092986	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	7q31.1		rs149092986-C	NR	5E-11		0.0549	[0.038-0.071] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
1436	chr7	111624088	111624089	rs149092986	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	7q31.1	NR	rs149092986-T	0.976125	2E-8		0.0163666	[0.011-0.022] unit increase	Affymetrix [16582909] (imputed)	N
1436	chr7	111624088	111624089	rs149092986	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	7q31.1	NR	rs149092986-T	0.976125	4E-8		0.0187541	[0.013-0.025] unit increase	Affymetrix [16582965] (imputed)	N
1436	chr7	111628420	111628421	rs73430835	30306274	Shah RL	2018-10-10	Hum Genet	Genome-wide association studies for corneal and refractive astigmatism in UK Biobank demonstrate a shared role for myopia susceptibility loci.	Refractive astigmatism	70,505 European ancestry cases, 17,500 European ancestry controls	NA	7q31.1	DOCK4	rs73430835-T	NR	2E-6		1.2870014	[1.13-1.49]	NR [5919636] (imputed)	N
1436	chr7	111642645	111642646	rs61159171	22747683	Eriksson N	2012-06-30	BMC Med Genet	Genetic variants associated with breast size also influence breast cancer risk.	Breast size	16,175 European ancestry female individuals	NA	7q31.1	ZNF277	rs61159171-T	0.348	6E-6		0.075	[0.042-0.108] cup size decrease	Illumina [7422970] (imputed)	N
1437	chr7	111676584	111676585	rs17159180	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7q31.1	NR	rs17159180-C	0.02962	7E-9	(CLTC)	0.3868	NR unit increase	Illumina [1671387] (imputed)	N
1437	chr7	111676584	111676585	rs17159180	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7q31.1	NR	rs17159180-C	0.02962	6E-9	(CLTCL1)	0.1337	NR unit increase	Illumina [1671387] (imputed)	N
1437	chr7	111676584	111676585	rs17159180	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7q31.1	NR	rs17159180-C	0.02962	2E-9	(CTSB)	0.3638	NR unit increase	Illumina [1671387] (imputed)	N
1437	chr7	111676584	111676585	rs17159180	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7q31.1	NR	rs17159180-C	0.02962	2E-8	(RAB7A)	0.03556	NR unit increase	Illumina [1671387] (imputed)	N
1437	chr7	111676584	111676585	rs17159180	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7q31.1	NR	rs17159180-C	0.02962	2E-8	(PLEC)	0.06418	NR unit increase	Illumina [1671387] (imputed)	N
1437	chr7	111676584	111676585	rs17159180	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7q31.1	NR	rs17159180-C	0.02962	1E-8	(KRT8)	3.036	NR unit increase	Illumina [1671387] (imputed)	N
1437	chr7	111676584	111676585	rs17159180	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7q31.1	NR	rs17159180-C	0.02962	1E-8	(KRT18)	1.8	NR unit increase	Illumina [1671387] (imputed)	N
1437	chr7	111677905	111677906	rs10428959	22890011	Frazier-Wood AC	2012-08-09	Pharmacogenet Genomics	Genome-wide association study indicates variants associated with insulin signaling and inflammation mediate lipoprotein responses to fenofibrate.	Response to fenofibrate	817 European ancestry individuals	NA	7q31.1	DOCK4	rs10428959-T	NR	1E-7	(VLDL diameter)	6.0	[3.79-8.21] unit increase	Affymetrix [~ 2543887] (imputed)	N
1437	chr7	111685263	111685264	rs73434610	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7q31.1	NR	rs73434610-G	0.03136	2E-8	(BPNT1)	0.02704	NR unit increase	Illumina [1671387] (imputed)	N
1437	chr7	111698107	111698108	rs634010	25378290	McQueen MB	2014-11-07	Behav Genet	The National Longitudinal Study of Adolescent to Adult Health (Add Health) sibling pairs genome-wide data.	Body mass index (change over time)	917 European ancestry individuals, 677 African American individuals, 209 Hispanic individuals, 73 Asian ancestry individuals, 8 Native American ancestry individuals, 2 individuals	NA	7q31.1	DOCK4	rs634010-T	0.24	5E-6		1.04	[0.59-1.48] unit increase	Illumina [717411]	N
1437	chr7	111774511	111774512	rs35844	34748635	Miranda JP	2021-11-08	J Clin Endocrinol Metab	Genome-Wide Association Study And Polygenic Risk Scores Of Serum Dheas Levels In A Chilean Children Cohort.	DHEAS levels	390 Hispanic or Latin American female individuals	NA	7q31.1	DOCK4	rs35844-C	0.237	3E-6		0.09	unit decrease	Illumina [5510858] (imputed)	N
1438	chr7	111912737	111912738	rs139244147	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	7q31.1		rs139244147-A	0.0604	8E-11		0.0193	[0.013-0.025] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1438	chr7	111912737	111912738	rs139244147	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	7q31.1	Intergenic	rs139244147-A	0.0604	5E-12	(MTAG)	0.0191	[0.014-0.025] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1439	chr7	111953441	111953442	rs10224789	31533690	Orlova E	2019-09-18	BMC Oral Health	Pilot GWAS of caries in African-Americans shows genetic heterogeneity.	Dental caries (decayed, missing and filled teeth)	109 African American adults	NA	7q31.1	IFRD1	rs10224789-?		8E-7		5.797	[3.76-7.84] unit increase	Illumina [~ 4900000] (imputed)	N
1439	chr7	111967289	111967290	rs10254160	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental extreme longevity (95 years and older)	1,339 middle-aged British cases, 40,934 middle-aged British controls	NA	7q31.1	NR	rs10254160-?	NR	7E-6		0.01885	[0.011-0.027] unit decrease	Affymetrix [9658292] (imputed)	N
1439	chr7	111996951	111996952	rs12113634	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	7q31.1	Intergenic	rs12113634-T	0.6386	4E-9	(MTAG)	0.0101	[0.0068-0.0134] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1439	chr7	111996951	111996952	rs12113634	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	7q31.1		rs12113634-T	0.6504	3E-9		0.0088	[0.0059-0.0117] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1439	chr7	112056229	112056230	rs2708597	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	7q31.1	DOCK4, ZNF277, IFRD1	rs2708597-?		3E-11				Affymetrix, Illumina [NR] (imputed)	N
1439	chr7	112062682	112062683	rs7780160	30958311	Tao F	2019-04-03	J Neuromuscul Dis	Modifier Gene Candidates in Charcot-Marie-Tooth Disease Type 1A: A Case-Only Genome-Wide Association Study.	Burning or tingling in extremities in Charcot-Marie-Tooth disease type 1A	141 European ancestry severe cases, 265 European ancestry mild cases	NA	7q31.1	NR	rs7780160-?		6E-6				Illumina [600000]	N
1440	chr7	112085399	112085400	rs3109109	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Cetobacterium A abundance in stool	5,959 Finnish ancestry individuals	NA	7q31.1		rs3109109-C	0.147427	5E-8		0.0513923	[0.033-0.07] unit increase	Illumina [7980478] (imputed)	N
1440	chr7	112085399	112085400	rs3109109	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q31.1	NR	rs3109109-C	0.115445	6E-11				Affymetrix, Illumina [23467995] (imputed)	N
1440	chr7	112085399	112085400	rs3109109	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	7q31.1	NR	rs3109109-C	0.115516	4E-12		0.021659	[0.016-0.028] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1440	chr7	112086332	112086333	rs17159640	20400778	Morrison AC	2010-04-17	Circ Cardiovasc Genet	Genomic variation associated with mortality among adults of European and African ancestry with heart failure: the cohorts for heart and aging research in genomic epidemiology consortium.	Mortality in heart failure	1,645 European ancestry cases, 881 European ancestry controls, 281 African ancestry cases, 185 African ancestry controls	NA	7q31.1	IFRD1	rs17159640-T	0.048	9E-6	(EA)	1.59	[0.94-2.68]	Affymetrix [up to 2366858] (imputed)	N
1440	chr7	112094742	112094743	rs6956741	22959728	Ahmeti KB	2012-09-05	Neurobiol Aging	Age of onset of amyotrophic lateral sclerosis is modulated by a locus on 1p34.1.	Amyotrophic lateral sclerosis (age of onset)	4,243 European ancestry cases	NA	7q31.1	IFRD1	rs6956741-G	0.06	2E-6	(Meta)			Illumina [254145]	N
1440	chr7	112122226	112122227	rs3128384	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q31.1	IFRD1, LSMEM1	rs3128384-C	0.605801	6E-9	(396 ms)	0.0333062	[0.022-0.045] unit decrease	Affymetrix [10000000] (imputed)	N
1440	chr7	112122226	112122227	rs3128384	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q31.1	IFRD1, LSMEM1	rs3128384-C	0.605801	4E-9	(400 ms)	0.033673	[0.022-0.045] unit decrease	Affymetrix [10000000] (imputed)	N
1440	chr7	112122226	112122227	rs3128384	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q31.1	IFRD1, LSMEM1	rs3128384-C	0.605801	4E-9	(392 ms)	0.0336696	[0.022-0.045] unit decrease	Affymetrix [10000000] (imputed)	N
1440	chr7	112122226	112122227	rs3128384	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q31.1	IFRD1, LSMEM1	rs3128384-C	0.605801	3E-8	(398 ms)	0.0316848	[0.02-0.043] unit decrease	Affymetrix [10000000] (imputed)	N
1440	chr7	112122226	112122227	rs3128384	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q31.1	IFRD1, LSMEM1	rs3128384-C	0.605801	2E-9	(402 ms)	0.0344018	[0.023-0.046] unit decrease	Affymetrix [10000000] (imputed)	N
1440	chr7	112122226	112122227	rs3128384	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q31.1	IFRD1, LSMEM1	rs3128384-C	0.605801	1E-9	(394 ms)	0.0349805	[0.024-0.046] unit decrease	Affymetrix [10000000] (imputed)	N
1440	chr7	112159177	112159178	rs5009270	23989986	Evangelou E	2013-08-29	Ann Rheum Dis	A meta-analysis of genome-wide association studies identifies novel variants associated with osteoarthritis of the hip.	Osteoarthritis (hip)	up to 4,734 European ancestry cases, up to 46,903 European ancestry controls	up to 6,928 European ancestry cases, up to 20,570 European ancestry controls	7q31.1	IFRD1	rs5009270-A	0.3	3E-6		1.1	[1.06-1.14]	Illumina [2567279] (imputed)	N
1440	chr7	112184562	112184563	rs143759156	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	7q31.1	NR	rs143759156-?	NR	5E-7		0.0084299	[0.0051-0.0117] unit increase	Affymetrix [805426] (imputed)	N
1441	chr7	112253739	112253739	rs559295369	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Small vessel stroke	333 Indian ancestry cases, 2,154 Indian ancestry controls	NA	7q31.1		rs559295369-?	NR	5E-6		1.2393076	[1.13072345028315-1.35831921214155]	Illumina [7827597] (imputed)	N
1442	chr7	112331795	112331796	rs2905274	30899057	Lee MG	2019-03-21	Sci Rep	Integrative Genome-Wide Association Studies of eQTL and GWAS Data for Gout Disease Susceptibility.	Gout	373 Han Chinese ancestry cases, 6,721 Han Chinese ancestry controls	385 Han Chinese ancestry cases, 7,445 Han Chinese ancestry controls	7q31.1	NR	rs2905274-A	0.087	1E-6		1.5	[NR]	Affymetrix [607675]	N
1442	chr7	112412280	112412281	rs139778071	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	7q31.1	NR	rs139778071-?	NR	5E-6		0.0076115	[0.0043-0.0109] unit increase	Affymetrix [805426] (imputed)	N
1444	chr7	112628372	112628373	rs10229603	18951430	Anney RJ	2008-10-24	Am J Med Genet B Neuropsychiatr Genet	Conduct disorder and ADHD: evaluation of conduct problems as a categorical and quantitative trait in the international multicentre ADHD genetics study.	Attention deficit hyperactivity disorder and conduct disorder	938 European ancestry trios	NA	7q31.1	FLJ31818, GPR85	rs10229603-C	0.31	5E-6				Perlegen [378332]	N
1444	chr7	112636938	112636939	rs7791116	30920136	Stapleton CP	2019-02-27	Am J Transplant	The impact of donor and recipient common clinical and genetic variation on estimated glomerular filtration rate in a European renal transplant population.	Estimated glomerular filtration rate after 5 years in renal transplantation (recipient effect)	Up to 2,921 European ancestry individuals	NA	7q31.1	AC018464.1	rs7791116-T	NR	8E-6				Illumina [up to 3935887] (imputed)	N
1444	chr7	112649413	112649414	rs6969802	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	7q31.1	NR	rs6969802-G	0.0792205338110166	5E-6	(IGP11)	0.2608	[0.15-0.37] unit decrease	Illumina [~ 2500000] (imputed)	N
1444	chr7	112649413	112649414	rs6969802	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	7q31.1	NR	rs6969802-G	0.0788437633348274	3E-6	(IGP51)	0.2669	[0.16-0.38] unit decrease	Illumina [~ 2500000] (imputed)	N
1445	chr7	112722195	112722196	rs2255811	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	Triglycerides	up to 62,166 European ancestry individuals	NA	7q31.1	GPR85	rs2255811-G	0.25	2E-8		0.041	[0.027-0.055] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
1445	chr7	112782555	112782556	rs12705849	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	7q31.1		rs12705849-A	NR	2E-15		0.0143	[0.011-0.018] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
1445	chr7	112782555	112782556	rs12705849	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	7q31.1	RP11-736E3.1	rs12705849-A	0.406893	8E-21		0.02107686	[0.017-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1445	chr7	112782555	112782556	rs12705849	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	7q31.1	RP11-736E3.1	rs12705849-A	0.406887	3E-21		0.021269452	[0.017-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1445	chr7	112782555	112782556	rs12705849	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q31.1	NR	rs12705849-A	0.346143	1E-21				Affymetrix, Illumina [19872809] (imputed)	N
1445	chr7	112782555	112782556	rs12705849	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	7q31.1	NR	rs12705849-A	0.406896	3E-24		0.020577	[0.017-0.025] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
1445	chr7	112782555	112782556	rs12705849	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	7q31.1		rs12705849-?	NR	2E-19				NR [~ 8900000] (imputed)	N
1445	chr7	112782555	112782556	rs12705849	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	7q31.1	RP11-736E3.1	rs12705849-A	0.408	9E-11		0.02348325	[0.016-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1445	chr7	112782555	112782556	rs12705849	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	7q31.1	RP11-736E3.1	rs12705849-A	0.4079	2E-9		0.02178277	[0.015-0.029] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1445	chr7	112782555	112782556	rs12705849	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	7q31.1	RP11-736E3.1	rs12705849-A	0.4079	8E-10		0.02228552	[0.015-0.029] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1445	chr7	112816098	112816099	rs117668569	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	7q31.1		rs117668569-T	0.9718	3E-8		0.0234	[0.015-0.032] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1445	chr7	112816098	112816099	rs117668569	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	7q31.1	Intergenic	rs117668569-T	0.9718	8E-9	(MTAG)	0.0228	[0.015-0.031] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1446	chr7	112911409	112911410	rs10953730	19043545	Gieger C	2008-11-28	PLoS Genet	Genetics meets metabolomics: a genome-wide association study of metabolite profiles in human serum.	Metabolite levels	284 European ancestry male individuals	NA	7q31.1	intergenic	rs10953730-?	0.35	2E-7	(acylcarnitine)			Affymetrix [187454]	N
1446	chr7	112972482	112972483	rs7788008	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	7q31.1	NR	rs7788008-?		6E-9		0.0126792	[0.0084-0.0169] unit increase	Affymetrix [19400418] (imputed)	N
1446	chr7	112978730	112978730	rs397703606	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	7q31.1		rs397703606-AT	NR	5E-12		0.0162	[0.011-0.021] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1447	chr7	112984492	112984493	rs9641499	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	7q31.1	NR	rs9641499-A	0.4341	1E-12		0.01776751	[0.013-0.023] unit decrease	Affymetrix [10549349] (imputed)	N
1447	chr7	112986783	112986784	rs10953733	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	7q31.1	NR	rs10953733-?	NR	9E-20				Affymetrix [~ 8270000] (imputed)	N
1447	chr7	112987649	112987650	rs4476935	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	7q31.1	NA	rs4476935-T	0.4268	2E-9		0.0108	[0.0073-0.0143] unit decrease	NR [~ 27400000] (imputed)	N
1447	chr7	112991256	112991257	rs6977483	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	7q31.1	NR	rs6977483-?	NR	5E-10				Affymetrix [~ 8270000] (imputed)	N
1447	chr7	113013865	113013865	rs10631643	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	7q31.1		rs10631643-TTTC	NR	3E-9		0.0109	[0.0074-0.0144] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1447	chr7	113013865	113013865	rs10631643	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	7q31.1		rs10631643-TTTC	0.38	3E-9				NR [NR] (imputed)	N
1447	chr7	113013865	113013865	rs10631643	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	7q31.1		rs10631643-TTTC	0.38	3E-14		0.011	% increase	NR [NR] (imputed)	N
1447	chr7	113021579	113021580	rs35682716	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	7q31.1	NR	rs35682716-?	NR	7E-8	(female)	0.19526	[0.12-0.27] unit decrease	Affymetrix [7794483] (imputed)	N
1447	chr7	113021579	113021580	rs35682716	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	7q31.1	NR	rs35682716-?	NR	5E-9		0.12996	[0.086-0.174] unit decrease	Affymetrix [7794483] (imputed)	N
1447	chr7	113028633	113028634	rs2396625	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		7q31.1	TSRM	rs2396625-T	0.57862	1E-12		0.00993598	[0.0072-0.0127] unit increase	Affymetrix [12370749]	N
1447	chr7	113028633	113028634	rs2396625	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	7q31.1		rs2396625-?	NR	4E-21				NR [~ 8900000] (imputed)	N
1447	chr7	113028633	113028634	rs2396625	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	7q31.1	NA	rs2396625-A	0.4183	3E-24		0.0176	[0.014-0.021] unit decrease	NR [~ 27400000] (imputed)	N
1447	chr7	113033425	113033426	rs1701829	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	7q31.1	NA	rs1701829-A	0.3352	2E-17		0.0153	[0.012-0.019] unit increase	NR [~ 27400000] (imputed)	N
1447	chr7	113035832	113035833	rs1524445	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	7q31.1	NA	rs1524445-T	0.4163	3E-22		0.0189	[0.015-0.023] unit decrease	NR [~ 27400000] (imputed)	N
1449	chr7	113267858	113267859	rs184469050	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	Height	19,965 British ancestry individuals from 6863 families.	NA	7q31.1	intergenic	rs184469050-G	0.0088	2E-8		0.02168886	[0.014-0.029] m decrease	Illumina [24111857] (imputed)	N
1449	chr7	113281542	113281543	rs2396671	34518958	Sanders AR	2021-09-13	Arch Sex Behav	Genome-Wide Linkage and Association Study of Childhood Gender Nonconformity in Males.	Childhood gender nonconformity	409 European ancestry concordant male sibling pairs	NA	7q31.1		rs2396671-G	0.612	3E-6		0.065	[0.038-0.092] unit increase	Affymetrix [6030650] (imputed)	N
1449	chr7	113351251	113351252	rs12705894	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		7q31.1	PPP1R3A	rs12705894-G	0.447911	2E-8		0.00780083	[0.0051-0.0105] unit increase	Affymetrix [12370749]	N
1450	chr7	113387755	113387756	rs1006437246	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Sleep apnea syndrome	13,818 European ancestry cases, 463,035 European ancestry controls, 473 East Asian ancestry cases, 177,864 East Asian ancestry controls	NA	7q31.1		rs1006437246-A	NR	3E-8		0.8424	[0.55-1.14] unit increase	Affymetrix, Illumina [25843213] (imputed)	N
1450	chr7	113462034	113462042	rs146299355	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	7q31.1		rs146299355-A	NR	8E-12		0.0145	[0.01-0.019] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
1450	chr7	113467443	113467444	rs11534004	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	7q31.1	PPP1R3A	rs11534004-A	NR	5E-7	(East Asian)	1.0893246	[1.05-1.13]	Illumina [6627481] (imputed)	N
1450	chr7	113467443	113467444	rs11534004	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	7q31.1	PPP1R3A	rs11534004-G	NR	2E-8	(Chinese)	1.1235955	[1.08-1.16]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1450	chr7	113483568	113483569	rs6944092	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	7q31.1	NR	rs6944092-?	NR	6E-18				Affymetrix [~ 8270000] (imputed)	N
1450	chr7	113483568	113483569	rs6944092	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	7q31.1		rs6944092-?	NR	2E-18				NR [~ 8900000] (imputed)	N
1450	chr7	113492833	113492834	rs12705916	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	7q31.1	NA	rs12705916-T	0.6201	1E-18		0.0156	[0.012-0.019] unit decrease	NR [~ 27400000] (imputed)	N
1450	chr7	113492833	113492834	rs12705916	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	7q31.1	NA	rs12705916-T	0.6201	1E-18		0.0156	[0.012-0.019] unit decrease	NR [~ 27400000] (imputed)	N
1451	chr7	113530135	113530135	rs34390564	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	7q31.1	NR	rs34390564-TA	NR	1E-9		0.0146	[0.0099-0.0193] unit increase	Affymetrix [9000000] (imputed)	N
1451	chr7	113560606	113560607	rs7795394	33128006	Timmins IR	2020-10-30	Commun Biol	Genome-wide association study of self-reported walking pace suggests beneficial effects of brisk walking on health and survival.	Walking pace	450,967 European ancestry individuals	NA	7q31.1	PPP1R3A	rs7795394-T	NR	2E-12		0.00904038	[0.0065-0.0116] unit decrease	Affymetrix [10061374] (imputed)	N
1451	chr7	113622593	113622594	rs9641509	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	7q31.1	PPP1R3A	rs9641509-T	0.6135	3E-8		0.002	[0.0014-0.0026] unit increase	Affymetrix [15275733] (imputed)	N
1451	chr7	113625227	113625228	rs36032338	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	7q31.1	NR	rs36032338-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
1451	chr7	113627083	113627084	rs12705932	31201950	Lutz MW	2019-03-06	Neurobiol Aging	Analysis of pleiotropic genetic effects on cognitive impairment, systemic inflammation, and plasma lipids in the Health and Retirement Study.	Low density lipoprotein cholesterol levels	6,545 European ancestry individuals	NA	7q31.1		rs12705932-G	0.11	1E-6		0.14	[0.1-0.24] unit decrease	Illumina [19468843] (imputed)	N
1452	chr7	113670552	113670553	rs71571192	31201950	Lutz MW	2019-03-06	Neurobiol Aging	Analysis of pleiotropic genetic effects on cognitive impairment, systemic inflammation, and plasma lipids in the Health and Retirement Study.	Serum total cholesterol levels	6,545 European ancestry individuals	NA	7q31.1		rs71571192-T	0.1	9E-7		0.14	[0.1-0.24] unit decrease	Illumina [19468843] (imputed)	N
1452	chr7	113741104	113741105	rs6466479	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	7q31.1	NR	rs6466479-G	0.122643248331108	7E-6	(IGP54)	0.2166	[0.12-0.31] unit increase	Illumina [~ 2500000] (imputed)	N
1452	chr7	113741104	113741105	rs6466479	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	7q31.1	NR	rs6466479-G	0.122643248331108	6E-6	(IGP43)	0.2172	[0.12-0.31] unit decrease	Illumina [~ 2500000] (imputed)	N
1452	chr7	113741104	113741105	rs6466479	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	7q31.1	NR	rs6466479-G	0.122643248331108	5E-7	(IGP17)	0.2414	[0.15-0.34] unit increase	Illumina [~ 2500000] (imputed)	N
1452	chr7	113741104	113741105	rs6466479	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	7q31.1	NR	rs6466479-G	0.122643248331108	4E-6	(IGP53)	0.2224	[0.13-0.32] unit increase	Illumina [~ 2500000] (imputed)	N
1452	chr7	113741104	113741105	rs6466479	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	7q31.1	NR	rs6466479-G	0.122643248331108	2E-6	(IGP57)	0.2271	[0.13-0.32] unit increase	Illumina [~ 2500000] (imputed)	N
1452	chr7	113741104	113741105	rs6466479	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	7q31.1	NR	rs6466479-G	0.122476576224399	3E-6	(IGP3)	0.2229	[0.13-0.32] unit decrease	Illumina [~ 2500000] (imputed)	N
1452	chr7	113741104	113741105	rs6466479	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	7q31.1	NR	rs6466479-G	0.12247588824577	2E-6	(IGP26)	0.23	[0.14-0.32] unit increase	Illumina [~ 2500000] (imputed)	N
1452	chr7	113752758	113752759	rs13246546	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	7q31.1	FOXP2	rs13246546-T	0.289	4E-8		0.0071	[0.0046-0.0096] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
1453	chr7	113775764	113775765	rs13246732	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	7q31.1	NR	rs13246732-T	NR	2E-10		0.0164	[0.011-0.021] unit increase	Affymetrix [9000000] (imputed)	N
1453	chr7	113775764	113775765	rs13246732	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	7q31.1	FOXP2	rs13246732-T	0.3144	4E-9		0.012850533	[0.0086-0.0171] unit increase	Affymetrix [up to 18485882] (imputed)	N
1453	chr7	113821370	113821371	rs12154502	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	7q31.1	FOXP2	rs12154502-T	0.155	3E-8		0.0091	[0.006-0.0122] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
1453	chr7	113848496	113848497	rs2100249	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	7q31.1	Intergenic	rs2100249-T	0.3555	2E-8	(MTAG)	0.0097	[0.0064-0.013] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1453	chr7	113848496	113848497	rs2100249	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	7q31.1		rs2100249-T	0.3488	2E-9		0.0089	[0.006-0.0118] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1453	chr7	113848496	113848497	rs2100249	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	7q31.1	Intergenic	rs2100249-T	0.3488	2E-10	(MTAG)	0.0087	[0.006-0.0114] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1453	chr7	113858362	113858363	rs12535428	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	7q31.1	FOXP2	rs12535428-T	NR	3E-9		0.0196959	[0.013-0.026] unit increase	Affymetrix [323123] (imputed)	N
1453	chr7	113863383	113863384	rs1450832	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling tense	371,318 European ancestry individuals	NA	7q31.1	FOXP2	rs1450832-A	0.290096	1E-9		6.07	z score increase	NR [10847151] (imputed)	N
1453	chr7	113863383	113863384	rs1450832	28468790	Agopian AJ	2017-06-01	Circ Cardiovasc Genet	Genome-Wide Association Studies and Meta-Analyses for Congenital Heart Defects.	Conotruncal heart defects (maternal effects)	up to 838 European ancestry trios	NA	7q31.1	FOXP2	rs1450832-?	NR	8E-6		1.099844	[1.054977-1.146619]	Illumina [at least 4756722] (imputed)	N
1453	chr7	113863383	113863384	rs1450832	28468790	Agopian AJ	2017-06-01	Circ Cardiovasc Genet	Genome-Wide Association Studies and Meta-Analyses for Congenital Heart Defects.	Congenital heart disease (maternal effect)	1,119 European ancestry trios	NA	7q31.1	FOXP2	rs1450832-?	NR	5E-6		1.100131	[1.055959-1.14615]	Illumina [at least 4756722] (imputed)	N
1453	chr7	113863662	113863663	rs35313157	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	7q31.1	NR	rs35313157-?	NR	7E-6		4.509	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1453	chr7	113865585	113865586	rs1799247	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fish- and plant-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	7q31.1	FOXP2	rs1799247-?	NR	3E-8	(female)	0.0343209	[0.022-0.046] unit decrease	Affymetrix [25921788] (imputed)	N
1453	chr7	113865734	113865735	rs1450833	33830993	Johnston KJA	2021-04-08	PLoS Genet	Sex-stratified genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	387,649 British ancestry individuals	NA	7q31.1	FOXP2	rs1450833-?	NR	1E-8			[NR]	NR [NR] (imputed)	N
1453	chr7	113865734	113865735	rs1450833	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	7q31.1	intergenic	rs1450833-T	0.76622	2E-8		5.586	z score decrease	Illumina [18485882] (imputed)	N
1453	chr7	113872934	113872935	rs1668331	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Sleep duration	384,317 European ancestry individuals	NA	7q31.1		rs1668331-T	0.3738	5E-10		0.01578	[0.011-0.021] unit decrease	Affymetrix, Illumina [10862567] (imputed)	N
1453	chr7	113893883	113893884	rs2396719	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	7q31.1	FOXP2, PPP1R3A	rs2396719-A	0.239	1E-12		1.0336539		Affymetrix [11880941] (imputed)	N
1454	chr7	113904060	113904061	rs11771168	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	7q31.1	FOXP2	rs11771168-T	0.2331	1E-10		0.015261746	[0.011-0.02] unit decrease	Affymetrix [up to 18485882] (imputed)	N
1454	chr7	113904060	113904061	rs11771168	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	7q31.1	NR	rs11771168-T	0.2356	3E-8		0.01488822	NR unit decrease	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
1454	chr7	113957305	113957306	rs1916977	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Irritable mood	366,726 European ancestry individuals	NA	7q31.1	FOXP2	rs1916977-T	0.299059	9E-9		5.74	z score decrease	NR [~ 10847151] (imputed)	N
1454	chr7	113973707	113973708	rs2694934	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	7q31.1	FOXP2	rs2694934-A	0.248711	9E-13		0.017528	[0.013-0.022] unit decrease	NR [16516521] (imputed)	N
1454	chr7	113987280	113987281	rs1527146	33830993	Johnston KJA	2021-04-08	PLoS Genet	Sex-stratified genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	387,649 British ancestry individuals	NA	7q31.1	FOXP2	rs1527146-?	NR	5E-8			[NR]	NR [NR] (imputed)	N
1454	chr7	113989201	113989202	rs117717824	26926045	Adhikari K	2016-03-01	Nat Commun	A genome-wide association scan in admixed Latin Americans identifies loci influencing facial and scalp hair features.	Beard thickness	2,922 Latin American individuals	NA	7q31.1	FOXP2	rs117717824-?	NR	1E-8				Illumina [9143600] (imputed)	N
1454	chr7	113990351	113990352	rs2049604	33563987	Tyrrell J	2021-02-09	Nat Commun	Genetic predictors of participation in optional components of UK Biobank.	Completion of the aide-memoire	361,501 European ancestry cases, 89,535 European ancestry controls	NA	7q31.1	NR	rs2049604-C	0.64	5E-9		0.97	[0.96, 0.98]	Affymetrix [39302896] (imputed)	N
1454	chr7	113990351	113990352	rs2049604	32246137	Meng W	2020-04-03	Hum Mol Genet	A genome-wide association study finds genetic variants associated with neck or shoulder pain in UK Biobank.	Neck pain or shoulder pain	53,994 European ancestry cases, 149,312 European ancestry controls	5,035 cases, 18,545 controls	7q31.1	NR	rs2049604-?	NR	3E-9		0.008	[0.0051-0.0109] unit decrease	NR [9304965] (imputed)	N
1454	chr7	113998245	113998246	rs12705959	25189868	Sung YJ	2014-09-03	Am J Hypertens	Gene-smoking interactions identify several novel blood pressure loci in the Framingham Heart Study.	Blood pressure (smoking interaction)	Up to 6,889 individuals	NA	7q31.1	FOXP2, PPP1R3A	rs12705959-?	NR	3E-7	(SBP,CPD)			Affymetrix [2485435] (imputed)	N
1454	chr7	113998245	113998246	rs12705959	25189868	Sung YJ	2014-09-03	Am J Hypertens	Gene-smoking interactions identify several novel blood pressure loci in the Framingham Heart Study.	Blood pressure (smoking interaction)	Up to 6,889 individuals	NA	7q31.1	FOXP2, PPP1R3A	rs12705959-?	NR	3E-6	(SBP,Pack-years)			Affymetrix [2485435] (imputed)	N
1454	chr7	113999636	113999637	rs2690837	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	7q31.1	FOXP2	rs2690837-C	0.55582	3E-8		5.539	z score decrease	Illumina [18485882] (imputed)	N
1454	chr7	114013762	114013763	rs117970722	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	7q31.1	FOXP2	rs117970722-A	0.9845	2E-6		0.1476	[0.086-0.209] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1454	chr7	114021409	114021410	rs2396726	30289880	Qi G	2018-10-05	PLoS Genet	Heritability informed power optimization (HIPO) leads to enhanced detection of genetic associations across multiple traits.	Social science traits (pleiotropy) (HIPO component 1)	up to 630,791 European ancestry individuals	NA	7q31.1	FOXP2	rs2396726-?	NR	1E-8				NR [2100000]	N
1454	chr7	114024315	114024316	rs12667224	34450027	Boer CG	2021-08-24	Cell	Deciphering osteoarthritis genetics across 826,690 individuals from 9 populations.	Osteoarthritis	175,803 European ancestry cases, 644,862 European ancestry controls, 1,265 Japanese ancestry cases, 449 Southern Chinese ancestry cases, 3,330 Japanese ancestry controls, 981 Southern Chinese ancestry controls	NA	7q31.1		rs12667224-A	0.5198	2E-9		0.972972	[0.964428252-0.981591385]	Affymetrix, Illumina [NR] (imputed)	N
1454	chr7	114025052	114025053	rs12537376	31194737	Johnston KJA	2019-06-13	PLoS Genet	Genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	387,649 British ancestry individuals	NA	7q31.1	FOXP2	rs12537376-A	0.3969	2E-9		0.0151	[0.01-0.02] unit increase	NR [NR]	N
1454	chr7	114029250	114029251	rs17137004	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio in diabetes	51,541 European, African American, East Asian, South Asian or Hispanic ancestry individuals	NA	7q31.1	FOXP2	rs17137004-A	0.6176	3E-8		0.0364	[0.024-0.049] unit decrease	Affymetrix, Illumina [8034757] (imputed)	N
1454	chr7	114031173	114031174	rs62469231	28333195	Uimari O	2017-04-01	Hum Reprod	Genome-wide genetic analyses highlight mitogen-activated protein kinase (MAPK) signaling in the pathogenesis of endometriosis.	Deep ovarian and/or rectovaginal disease with dense adhesions	1,364 European ancestry cases, 7,060 European ancestry controls.	NA	7q31.1	FOXP2	rs62469231-?	NR	5E-7		1.77	[1.37-2.27]	Illumina [NR] (imputed)	N
1455	chr7	114046159	114046160	rs2030912	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	7q31.1	NR	rs2030912-T	0.4786	1E-17				NR [9056863] (imputed)	N
1455	chr7	114047541	114047542	rs8180817	32332799	Song W	2020-04-24	Sci Rep	Genome-wide association analysis of insomnia using data from Partners Biobank.	Insomnia	404,588 European ancestry individuals, 17,651 European, Hispanic and African ancestry individuals	NA	7q31.1	FOXP2	rs8180817-C	0.492	2E-8				Illumina [5508534] (imputed)	N
1455	chr7	114047541	114047542	rs8180817	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	7q31.1	NR	rs8180817-G	0.5696	2E-16		1.0504202	[1.04-1.06]	Affymetrix, Illumina [NR] (imputed)	N
1455	chr7	114056459	114056460	rs12705964	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	7q31.1	NR	rs12705964-?	NR	2E-6		4.714	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1455	chr7	114056495	114056495	rs71149745	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first birth	542,901 European ancestry individuals	NA	7q31.1	FOXP2	rs71149745-A	0.5738	6E-9		0.0563	[0.037-0.075] unit decrease	NR [9744772] (imputed)	N
1455	chr7	114058731	114058732	rs34291892	32246137	Meng W	2020-04-03	Hum Mol Genet	A genome-wide association study finds genetic variants associated with neck or shoulder pain in UK Biobank.	Neck pain or shoulder pain	53,994 European ancestry cases, 149,312 European ancestry controls	5,035 cases, 18,545 controls	7q31.1	NR	rs34291892-?	NR	7E-12		0.0092	[0.0065-0.0119] unit decrease	NR [9304965] (imputed)	N
1455	chr7	114059155	114059156	rs2894699	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Major depressive disorder (MTAG)	at least 170,756 European ancestry cases, at least 329,443 European ancestry controls	NA	7q31.1	NR	rs2894699-T	0.4305	4E-9		0.024859993	[0.017-0.033] unit decrease	NR [NR]	N
1455	chr7	114060662	114060663	rs10228350	31527586	An J	2019-09-16	Nat Commun	Gastroesophageal reflux GWAS identifies risk loci that also associate with subsequent severe esophageal diseases.	Gastroesophageal reflux disease	80,265 European and unknown ancestry cases, 305,011 European and unknown ancestry controls	NA	7q31.1	FOXP2	rs10228350-T	NR	2E-8		1.0325176	[1.02-1.04]	Affymetrix, Illumina [up to 7600000] (imputed)	N
1455	chr7	114060662	114060663	rs10228350	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7q31.1		rs10228350-?	NR	2E-15				NR [~ 8900000] (imputed)	N
1455	chr7	114060662	114060663	rs10228350	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Irritable mood	366,726 European ancestry individuals	NA	7q31.1	FOXP2	rs10228350-A	0.412901	1E-10		6.46	z score decrease	NR [~ 10847151] (imputed)	N
1455	chr7	114060662	114060663	rs10228350	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling tense	371,318 European ancestry individuals	NA	7q31.1	FOXP2	rs10228350-A	0.412901	4E-9		5.88	z score decrease	NR [10847151] (imputed)	N
1455	chr7	114071034	114071035	rs1476535	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	7q31.1		rs1476535-C	0.451	3E-26		0.013	[0.011-0.015] unit decrease	NR [NR] (imputed)	N
1455	chr7	114071034	114071035	rs1476535	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure	35,269 European ancestry cases, 63,451 European ancestry controls	NA	7q31.1	NR	rs1476535-T	0.544955	1E-10		1.094	[1.07-1.12]	Affymetrix [7791636] (imputed)	N
1455	chr7	114071034	114071035	rs1476535	30610198	Soler Artigas M	2019-01-04	Mol Psychiatry	Attention-deficit/hyperactivity disorder and lifetime cannabis use: genetic overlap and causality.	Attention deficit hyperactivity disorder or cannabis use	18,345 European ancestry ADHD cases, 14,374 European ancestry cannabis use cases, 50,410 European ancestry controls	NA	7q31.1	FOXP2	rs1476535-T	NR	6E-10		1.07	[1.05-1.1]	NR [5009020] (imputed)	N
1455	chr7	114076393	114076394	rs10280045	30804566	Lane JM	2019-02-25	Nat Genet	Biological and clinical insights from genetics of insomnia symptoms.	Insomnia symptoms (never/rarely vs. usually)	129,270 European ancestry cases, 108,357 European ancestry controls	17,140 European ancestry cases, 61,850 European ancestry controls	7q31.1	FOXP2	rs10280045-G	0.573651	2E-11		1.03	[1.02-1.04]	Affymetrix [14661600] (imputed)	N
1455	chr7	114076393	114076394	rs10280045	30804566	Lane JM	2019-02-25	Nat Genet	Biological and clinical insights from genetics of insomnia symptoms.	Insomnia symptoms (never/rarely vs. sometimes/usually)	345,022 European ancestry cases, 108,357 European ancestry controls	17,140 European ancestry cases, 61,850 European ancestry controls	7q31.1	FOXP2	rs10280045-G	0.573651	2E-6		1.03	[1.02-1.04]	Affymetrix [14661600] (imputed)	N
1455	chr7	114080335	114080336	rs2014265	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	7q31.1	FOXP2	rs2014265-?		3E-8				NR [7428630] (imputed)	N
1455	chr7	114082493	114082494	rs10261780	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	7q31.1		rs10261780-C	0.43	1E-48		14.65	z score increase	Affymetrix [9061022] (imputed)	N
1455	chr7	114082493	114082494	rs10261780	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	7q31.1		rs10261780-C	0.43	2E-16		8.23	z score increase	Affymetrix [9061022] (imputed)	N
1455	chr7	114082493	114082494	rs10261780	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	7q31.1	NR	rs10261780-C	0.4776	1E-14				NR [9056863] (imputed)	N
1455	chr7	114083549	114083550	rs10228494	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	7q31.1	NA	rs10228494-G	0.5738	6E-13	(Male)	1.0729614	[1.05-1.09]	Affymetrix, Illumina [NR] (imputed)	N
1455	chr7	114083549	114083550	rs10228494	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	7q31.1	FOXP2	rs10228494-C	0.4473	1E-19		0.017694445	[0.014-0.022] unit decrease	Illumina [9339358] (imputed)	N
1455	chr7	114086133	114086135	rs5886709	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Attention deficit hyperactivity disorder	55,374 individuals	NA	7q31.1	NR	rs5886709-?		2E-8				NR [8028859]	N
1455	chr7	114086133	114086135	rs5886709	30478444	Demontis D	2018-11-26	Nat Genet	Discovery of the first genome-wide significant risk loci for attention deficit/hyperactivity disorder.	Attention deficit hyperactivity disorder	19,099 European ancestry cases, 72 non-European ancestry cases, 1,012 Han Chinese ancestry cases, 34,194 European ancestry controls, 72 non-European ancestry controls, 925 Han Chinese ancestry controls	5,085 Icelandic ancestry cases, 5,857 cases, 131,122 Icelandic ancestry controls, 70,393 controls	7q31.1	FOXP2	rs5886709-G	NR	4E-10		1.049	NR	Affymetrix, Illumina, Perlegen [8047421] (imputed)	N
1455	chr7	114109348	114109349	rs727644	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	7q31.1	FOXP2	rs727644-A	0.418	1E-34		0.0147	[0.012-0.017] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
1455	chr7	114109348	114109349	rs727644	30271922	Clifton EAD	2018-05-03	Commun Biol	Genome-wide association study for risk taking propensity indicates shared pathways with body mass index.	Self-reported risk-taking behaviour	113,882 European ancestry cases, 322,354 European ancestry controls	NA	7q31.1	FOXP2	rs727644-G	0.6	4E-14		1.031	[1.023-1.040]	Affymetrix [7736308] (imputed)	N
1455	chr7	114109348	114109349	rs727644	30181555	Strawbridge RJ	2018-09-04	Transl Psychiatry	Genetics of self-reported risk-taking behaviour, trans-ethnic consistency and relevance to brain gene expression.	Self-reported risk-taking behaviour	83,677 British ancestry cases, 244,662 British ancestry controls	2,764 South Asian ancestry cases, 3,139 African Caribbean ancestry cases, 16,169 European ancestry cases, 3,866 mixed ancestry cases, 4,267 South Asian ancestry controls, 4,341 African Caribbean ancestry controls, 31,814 European ancestry controls, 5,988 mixed ancestry controls	7q31.1	NR	rs727644-A	0.4	2E-12		0.038	[0.028-0.048] unit decrease	Affymetrix [NR] (imputed)	N
1455	chr7	114116880	114116881	rs7783012	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	7q31.1		rs7783012-A	NR	2E-10		0.0085	[0.006-0.011] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1455	chr7	114116880	114116881	rs7783012	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	7q31.1	FOXP2	rs7783012-G	0.407235	1E-20		0.0195907	[0.015-0.024] unit increase	NR [16516521] (imputed)	N
1455	chr7	114116880	114116881	rs7783012	33096046	Johnson EC	2020-10-20	Lancet Psychiatry	A large-scale genome-wide association study meta-analysis of cannabis use disorder.	Cannabis use disorder	17,068 European ancestry cases, 357,219 European ancestry controls, 3,848 African ancestry cases, 5,897 African ancestry controls	NA	7q31.1	FOXP2	rs7783012-A		2E-9	(EA)	1.11	[1.07-1.15]	Illumina [NR] (imputed)	N
1455	chr7	114116880	114116881	rs7783012	33096046	Johnson EC	2020-10-20	Lancet Psychiatry	A large-scale genome-wide association study meta-analysis of cannabis use disorder.	Cannabis use disorder	17,068 European ancestry cases, 357,219 European ancestry controls, 3,848 African ancestry cases, 5,897 African ancestry controls	NA	7q31.1	FOXP2	rs7783012-A		2E-9				Illumina [NR] (imputed)	N
1455	chr7	114116880	114116881	rs7783012	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	7q31.1	FOXP2	rs7783012-?	NR	1E-9		0.012378814	[0.0084-0.0164] unit decrease	NR [7306098]	N
1455	chr7	114123307	114123308	rs2189008	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	7q31.1		rs2189008-?	NR	7E-9				NR [~ 8900000] (imputed)	N
1455	chr7	114125579	114125580	rs201321554	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 151)	19,670 European ancestry individuals	NA	7q31.1		rs201321554-?	NR	9E-11				NR [9705931] (imputed)	N
1455	chr7	114142249	114142250	rs1015511	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	7q31.1	FOXP2	rs1015511-A	0.4057	1E-13		0.01782634	[0.013-0.023] unit decrease	Affymetrix [11515109] (imputed)	N
1455	chr7	114153636	114153637	rs549993043	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	7q31.1	NR	rs549993043-?	NR	5E-6		0.0075106	[0.0043-0.0107] unit decrease	Affymetrix [805426] (imputed)	N
1455	chr7	114158953	114158954	rs9969232	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Attention deficit hyperactivity disorder (MTAG)	61,421 individuals	NA	7q31.1	NR	rs9969232-?		8E-9				NR [520857]	N
1455	chr7	114158953	114158954	rs9969232	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	7q31.1	FOXP2	rs9969232-A	0.3482	3E-8		0.011874809	[0.0077-0.0161] unit decrease	Affymetrix [up to 18485882] (imputed)	N
1455	chr7	114160741	114160742	rs6969188	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Irritable mood	366,726 European ancestry individuals	NA	7q31.1	NR	rs6969188-A	0.438556	2E-10		6.37	z score increase	NR [~ 10847151] (imputed)	N
1456	chr7	114178652	114178653	rs10486023	27412988	Tise CG	2016-07-13	G3 (Bethesda)	From Genotype to Phenotype: Nonsense Variants in SLC13A1 Are Associated with Decreased Serum Sulfate and Increased Serum Aminotransferases.	Serum sulfate level	917 Old Order Amish (founder/genetic isolate) individuals	NA	7q31.1	FOXP2	rs10486023-?	NR	4E-6		0.067	NR unit decrease	Affymetrix [NR]	N
1456	chr7	114180061	114180062	rs10262462	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	7q31.1		rs10262462-A	0.3974	3E-12		0.015	[0.011-0.019] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
1456	chr7	114194614	114194615	rs1859100	33740410	Warrier V	2021-03-16	Lancet Psychiatry	Gene-environment correlations and causal effects of childhood maltreatment on physical and mental health: a genetically informed approach.	Childhood maltreatment	185,414 European ancestry individuals	NA	7q31.1	NR	rs1859100-T	0.4	9E-10		0.021	[0.015-0.027] unit decrease	Affymetrix, Illumina [at least 500527] (imputed)	N
1456	chr7	114194614	114194615	rs1859100	32066696	Dalvie S	2020-01-27	Transl Psychiatry	Genomic influences on self-reported childhood maltreatment.	Childhood maltreatment	124,711 European ancestry individuals	26,290 European ancestry individuals	7q31.1	FOXP2	rs1859100-?	NR	4E-8		5.495	NR z score increase	Affymetrix, Illumina [at least 800000] (imputed)	N
1456	chr7	114210813	114210814	rs17137124	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	7q31.1		rs17137124-T	0.47	8E-22		9.6	z score increase	Affymetrix [9061022] (imputed)	N
1456	chr7	114211911	114211912	rs2189012	30610198	Soler Artigas M	2019-01-04	Mol Psychiatry	Attention-deficit/hyperactivity disorder and lifetime cannabis use: genetic overlap and causality.	Attention deficit hyperactivity disorder or cannabis use	18,345 European ancestry ADHD cases, 14,374 European ancestry cannabis use cases, 50,410 European ancestry controls	NA	7q31.1	FOXP2	rs2189012-A	NR	1E-8		1.07	[1.05-1.1]	NR [5009020] (imputed)	N
1456	chr7	114212651	114212652	rs144087161	34162658	Quinn MC	2021-06-23	Cancer Epidemiol Biomarkers Prev	Identification of a locus near ULK1 associated with progression-free survival in ovarian cancer.	Progression free survival in epithelial ovarian cancer treated with carboplatin and paclitaxel	2,352 European ancestry individuals	NA	7q31.1	NR	rs144087161-T		1E-6		0.6189	[0.37-0.87] unit decrease	Illumina [12764477] (imputed)	N
1456	chr7	114218581	114218582	rs1229762	30846698	Dashti HS	2019-03-07	Nat Commun	Genome-wide association study identifies genetic loci for self-reported habitual sleep duration supported by accelerometer-derived estimates.	Sleep duration (short sleep)	106,192  European ancestry cases, 305,742 European ancestry controls	47,180  adults, 10,554 children or adolescents	7q31.1	FOXP2	rs1229762-T	NR	1E-12		1.038		NR [14661600] (imputed)	N
1456	chr7	114291434	114291435	rs10953765	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	7q31.1	FOXP2	rs10953765-A	0.4401	1E-9		0.012314295	[0.0083-0.0163] unit decrease	Affymetrix [up to 18485882] (imputed)	N
1456	chr7	114291434	114291435	rs10953765	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	7q31.1	NR	rs10953765-A	0.534	8E-9		0.0063084	[0.0042-0.0084] unit increase	NR [9732723] (imputed)	N
1456	chr7	114291434	114291435	rs10953765	27992416	Lane JM	2016-12-19	Nat Genet	Genome-wide association analyses of sleep disturbance traits identify new loci and highlight shared genetics with neuropsychiatric and metabolic traits.	Sleep duration	111,975 European ancestry individuals	NA	7q31.1	FOXP2	rs10953765-G	0.447	3E-7		0.022	[0.014-0.03] hours increase	Affymetrix [up to 73355677] (imputed)	N
1457	chr7	114296101	114296102	rs1456031	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	7q31.1	NR	rs1456031-C	0.545	4E-8		0.00805894	[0.0052-0.0109] unit decrease	NR [9732723] (imputed)	N
1457	chr7	114313198	114313199	rs12705973	33218114	Rebelo MA	2020-11-18	Brain Sci	Genome-Wide Scan for Five Brain Oscillatory Phenotypes Identifies a New QTL Associated with Theta EEG Band.	Beta 1 electroencephalogram power	191 European ancestry individuals	NA	7q31.1	NR	rs12705973-?	NR	3E-6		0.02	NR unit increase	Affymetrix [388620]	N
1457	chr7	114313217	114313218	rs10953766	27798627	Barban N	2016-10-31	Nat Genet	Genome-wide analysis identifies 12 loci influencing human reproductive behavior.	Age at first birth	189,656 European ancestry women, 48,408 European ancestry men		7q31.1	FOXP2	rs10953766-A	0.429	2E-10		0.087	NR unit increase	Illumina [2400000] (imputed)	N
1457	chr7	114313217	114313218	rs10953766	27798627	Barban N	2016-10-31	Nat Genet	Genome-wide analysis identifies 12 loci influencing human reproductive behavior.	Age at first birth	189,656 European ancestry women		7q31.1	FOXP2	rs10953766-A	0.429	8E-9		0.089	NR unit increase	Illumina [2400000] (imputed)	N
1457	chr7	114318070	114318071	rs2396766	34431594	Atkins JL	2021-08-25	Aging Cell	A genome-wide association study of the frailty index highlights brain pathways in ageing.	Frailty index	175,226 European ancestry individuals	NA	7q31.1	FOXP2	rs2396766-A	0.4725	1E-9		0.0201	[0.014-0.027] unit increase	Affymetrix, Illumina [7666890] (imputed)	N
1457	chr7	114321942	114321943	rs17291908	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling tense	371,318 European ancestry individuals	NA	7q31.1	FOXP2	rs17291908-A	0.475768	4E-9		5.87	z score decrease	NR [10847151] (imputed)	N
1457	chr7	114322123	114322124	rs13226763	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in obese individuals	4,613 European ancestry male individuals, 4,690 European ancestry female individuals, 142 European ancestry individuals	NA	7q31.1	FOXP2	rs13226763-C	0.55	7E-6	(women)	0.095	[0.054-0.136] kg/m2 decrease	Affymetrix, Illumina [at least 188473] (imputed)	N
1457	chr7	114334570	114334571	rs12705979	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	7q31.1		rs12705979-T	0.4422	2E-6		31.477953	z score increase	NR [6814003]	N
1457	chr7	114334956	114334957	rs12705981	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	7q31.1	FOXP2	rs12705981-C	0.458	5E-6	(EA, women)	0.021	[0.012-0.03] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1457	chr7	114337651	114337652	rs10261050	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	7q31.1	NR	rs10261050-?	NR	1E-10				Affymetrix [~ 8270000] (imputed)	N
1457	chr7	114352125	114352126	rs651902	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Sleep duration	384,317 European ancestry individuals	NA	7q31.1		rs651902-C	0.3843	3E-9		0.01498	[0.01-0.02] unit increase	Affymetrix, Illumina [10862567] (imputed)	N
1457	chr7	114352614	114352615	rs1840660	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		7q31.1	FOXP2	rs1840660-G	0.611666	2E-12		0.00995498	[0.0072-0.0127] unit decrease	Affymetrix [12370749]	N
1457	chr7	114352614	114352615	rs1840660	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	7q31.1		rs1840660-?	NR	3E-16				NR [~ 8900000] (imputed)	N
1457	chr7	114352861	114352862	rs776472	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Irritable mood	366,726 European ancestry individuals	NA	7q31.1	FOXP2	rs776472-T	0.438921	8E-10		6.15	z score decrease	NR [~ 10847151] (imputed)	N
1457	chr7	114357542	114357543	rs1869839	22936669	Julia A	2012-08-30	Gut	A genome-wide association study on a southern European population identifies a new Crohn's disease susceptibility locus at RBX1-EP300.	Crohn's disease	1,277 European ancestry cases, 1,488 European ancestry controls	1,365 European ancestry cases, 1,396 European ancestry controls	7q31.1	FOXP2	rs1869839-?	0.64	7E-6		1.2	[1.11-1.3]	Illumina [508934]	N
1457	chr7	114363565	114363566	rs1378770	26545240	Giri A	2015-11-06	PLoS One	Genetic Determinants of Pelvic Organ Prolapse among African American and Hispanic Women in the Women's Health Initiative.	Pelvic organ prolapse (moderate/severe)	154 African American cases, 948 African American controls, 163 Hispanic cases, 305 Hispanic controls	NA	7q31.1	FOXP2	rs1378770-G	0.15	2E-6		1.8		Affymetrix [at least 730985] (imputed)	N
1457	chr7	114371576	114371579	rs201178674	30718321	Sanchez-Roige S	2019-02-04	J Neurosci	Genome-wide association studies of impulsive personality traits (BIS-11 and UPPSP) and drug experimentation in up to 22,861 adult research participants identify loci in the CACNA1I and CADM2 genes.	Drug experimentation measurement	22,572 European ancestry individuals	NA	7q31.1	FOXP2, MDFIC	rs201178674-?	0.9957	6E-7		0.473	[0.659-0.287] unit decrease	Illumina [11434023] (imputed)	N
1457	chr7	114382907	114382908	rs684253	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	7q31.1	MDFIC	rs684253-T	0.635	1E-10		0.0079	[0.0055-0.0103] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
1457	chr7	114400998	114400999	rs4727804	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	7q31.1	NR	rs4727804-A	NR	3E-6		0.016	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
1457	chr7	114400998	114400999	rs4727804	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	7q31.1	MIR3666, MDFIC	rs4727804-A	0.21271248886848	1E-8		0.020766307	unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1457	chr7	114412663	114412664	rs6950442	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	7q31.1		rs6950442-G	NR	2E-10		0.013	[0.0091-0.0169] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1457	chr7	114412663	114412664	rs6950442	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	7q31.1	FOXP2, MDFIC	rs6950442-G	0.79	4E-8		0.017	[0.011-0.023] unit increase	Illumina [6108953] (imputed)	N
1457	chr7	114414897	114414898	rs78186662	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris heterochromicity	329 South Asian ancestry individuals		7q31.1	DMBT1	rs78186662-C	0.018	4E-6		1.417	[0.83-2.01] unit decrease	Illumina [640625] (imputed)	N
1458	chr7	114430001	114430002	rs12705992	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	7q31.1	FOXP2	rs12705992-A	0.8365	1E-6		0.0447	[0.027-0.063] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1458	chr7	114443037	114443038	rs1034591	28235828	Traglia M	2017-04-03	G3 (Bethesda)	Independent Maternal and Fetal Genetic Effects on Midgestational Circulating Levels of Environmental Pollutants.	Midgestational circulating levels of PBDEs (fetal genetic effect)	764 fetuses	NA	7q31.1	FOXP2, MDFIC	rs1034591-?		6E-7	(BDE-47)	0.27	[0.17-0.37] unit decrease	Affymetrix [629686]	N
1458	chr7	114493273	114493274	rs6466499	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure	35,269 European ancestry cases, 63,451 European ancestry controls	NA	7q31.1	NR	rs6466499-A	0.211549	9E-9		1.0845987	[1.06-1.11]	Affymetrix [7791636] (imputed)	N
1458	chr7	114499931	114499932	rs2188307	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or recurrent major depressive disorder	11,361 European ancestry schizophrenia female cases, 20,206 European ancestry schizophrenia male cases, 11,897 European ancestry bipolar disorder female cases, 8,027 European ancestry bipolar disorder male cases, 3,833 European ancestry recurrent major depressive disorder female cases, 1,481 recurrent major depressive disorder male cases, 38,937 European ancestry female controls, 29,714 European ancestry male controls, 686 East Asian ancestry schizophrenia female cases, 1,907 East Asian ancestry female controls, 1,150 East Asian ancestry schizophrenia male cases, 1,476 East Asian ancestry male controls	NA	7q31.1	FOXP2, MDFIC	rs2188307-T	0.3753	5E-6	(male)	0.0648	[0.037-0.093] unit decrease	NR [NR] (imputed)	N
1458	chr7	114499931	114499932	rs2188307	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or recurrent major depressive disorder	11,361 European ancestry schizophrenia female cases, 20,206 European ancestry schizophrenia male cases, 11,897 European ancestry bipolar disorder female cases, 8,027 European ancestry bipolar disorder male cases, 3,833 European ancestry recurrent major depressive disorder female cases, 1,481 recurrent major depressive disorder male cases, 38,937 European ancestry female controls, 29,714 European ancestry male controls	NA	7q31.1	NR	rs2188307-T	0.373	2E-6	(male)	0.0694	[0.041-0.098] unit decrease	NR [NR] (imputed)	N
1458	chr7	114514124	114514125	rs4265116	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	7q31.1	Intergenic	rs4265116-T	0.1313	2E-11	(MTAG)	0.0165	[0.012-0.021] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1458	chr7	114519338	114519339	rs113615161	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	7q31.1		rs113615161-T	0.133	3E-9		0.0123	[0.0082-0.0164] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1458	chr7	114519338	114519339	rs113615161	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	7q31.1	Intergenic	rs113615161-T	0.133	4E-11	(MTAG)	0.0128	[0.0091-0.0165] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1458	chr7	114540828	114540832	rs144133613	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris heterochromicity	329 South Asian ancestry individuals		7q31.1	U91319.1	rs144133613-T	0.019	9E-7		1.473	[0.9-2.05] unit decrease	Illumina [640625] (imputed)	N
1459	chr7	114557479	114557480	rs79937071	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	7q31.1		rs79937071-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1459	chr7	114559776	114559777	rs61499730	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	7q31.1	Intergenic	rs61499730-A	0.1356	3E-8	(MTAG)	0.0146	[0.0095-0.0197] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1459	chr7	114596840	114596841	rs2709505	25656473	de With SA	2015-02-05	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of lymphoblast cell viability after clozapine exposure.	Clozapine-induced cytotoxicity	90 European ancestry lymphoblast cell lines	NA	7q31.1	MDFIC	rs2709505-?	NR	1E-8	(30x)			NR [2092490]	N
1459	chr7	114620505	114620506	rs77236693	33385171	Hagg S	2020-12-31	Hum Genet	Deciphering the genetic and epidemiological landscape of mitochondrial DNA abundance.	Mitochondrial DNA levels	295,150 European ancestry individuals	NA	7q31.1	NR	rs77236693-T	0.08151	6E-12		0.030299	[0.022-0.039] unit increase	Affymetrix [3505788] (imputed)	N
1459	chr7	114625345	114625346	rs7786588	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference	1,254 whole genome sequenced European ancestry individuals, 3,074 whole genome sequenced individuals, 29,716 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 701 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,050 Mylopotamos (founder/genetic isolate) individuals, 883 Pomak (founder/genetic isolate) individuals	205,909 European ancestry individuals	7q31.1	MDFIC	rs7786588-A	0.3207	7E-6		0.039	[0.022-0.056] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1459	chr7	114629284	114629285	rs7784447	23818313	Kim HJ	2012-11-06	Obesity (Silver Spring)	Combined linkage and association analyses identify a novel locus for obesity near PROX1 in Asians.	Obesity	756 Mongolian ancestry individuals from 55 families	1,301 Korean ancestry individuals	7q31.1	MDFIC	rs7784447-A	0.11	4E-6	(BMI)			Illumina [567072]	N
1459	chr7	114651693	114651694	rs62470670	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q31.2	NR	rs62470670-G	0.105212	3E-11				Affymetrix, Illumina [23467995] (imputed)	N
1459	chr7	114651693	114651694	rs62470670	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	7q31.2	NR	rs62470670-G	0.092471	5E-13		0.023333	[0.017-0.03] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1459	chr7	114679702	114679703	rs12706006	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on educational attainment (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	7q31.2		rs12706006-?	NR	3E-8				NR [NR]	N
1459	chr7	114682851	114682852	rs2157948	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on cognitive performance (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	7q31.2		rs2157948-?	NR	4E-8				NR [NR]	N
1459	chr7	114682851	114682852	rs2157948	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on Townsend deprivation index (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	7q31.2		rs2157948-?	NR	3E-8				NR [NR]	N
1460	chr7	114716285	114716286	rs6972244	35023831	Chong M	2022-01-13	Elife	GWAS and ExWAS of blood Mitochondrial DNA copy number identifies 71 loci and highlights a potential causal role in dementia.	Mitochondrial DNA copy number	395,718 British, Irish, Other White, South Asian, African ancestry individuals	NA	7q31.2	NR	rs6972244-A	0.08127	3E-25		0.0355	[0.029-0.042] unit increase	Affymetrix [23037915] (imputed)	N
1460	chr7	114744462	114744463	rs74750282	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	7q31.2	NR	rs74750282-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
1460	chr7	114777022	114777023	rs13308256	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Spatial processing	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	7q31.2	intergenic	rs13308256-G	NR	9E-6		0.35659042	[0.17-0.54] unit decrease	Illumina [> 6200000] (imputed)	N
1461	chr7	114838119	114838120	rs10235162	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	7q31.2	MDFIC	rs10235162-T	0.223	2E-8		0.008	[0.0053-0.0107] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
1461	chr7	114842573	114842574	rs6466512	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	7q31.2	NR	rs6466512-A	0.4172	8E-7		0.0059	[0.0035-0.0083] unit decrease	NR [7666894] (imputed)	N
1461	chr7	114914127	114914128	rs79274420	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-8 levels	3,526 Finnish ancestry individuals	NA	7q31.2	NR	rs79274420-G		6E-6		0.585	[0.33-0.84] SD units decrease	NR [10700000] (imputed)	N
1461	chr7	114914607	114914608	rs10274759	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	7q31.2	NR	rs10274759-?	NR	3E-6				Affymetrix [5486770] (imputed)	N
1461	chr7	114922150	114922151	rs56158970	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar I disorder	14,879 European ancestry cases, 31,358 European ancestry controls	NA	7q31.2	NR	rs56158970-G	0.014000000000000012	4E-7		1.3937476	[NR]	NR [9372253] (imputed)	N
1461	chr7	114928524	114928525	rs17460480	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 122)	19,670 European ancestry individuals	NA	7q31.2		rs17460480-?	NR	1E-12				NR [9705931] (imputed)	N
1461	chr7	114940146	114940147	rs6968125	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	7q31.2	NA	rs6968125-T		8E-24		0.0187612	[0.015-0.022] unit decrease	Illumina [13288253] (imputed)	N
1461	chr7	114940146	114940147	rs6968125	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking cessation (MTAG)	up to 820,192 European ancestry individuals	NA	7q31.2	NR	rs6968125-T	0.474	4E-9		0.00912677	[0.0061-0.0122] unit decrease	NR [9732723] (imputed)	N
1461	chr7	114940158	114940159	rs6968380	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	7q31.2	NR	rs6968380-A	0.681	3E-24		0.0118027	[0.0095-0.0141] unit decrease	NR [9732723] (imputed)	N
1461	chr7	114940158	114940159	rs6968380	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	7q31.2	NR	rs6968380-A	0.681	1E-17		0.023419237	[0.018-0.029] unit decrease	NR [~ 10000000] (imputed)	N
1461	chr7	114942798	114942799	rs2214107	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	7q31.2	NR	rs2214107-G	0.682	1E-13		0.0118978	[0.0088-0.015] unit increase	NR [9732723] (imputed)	N
1461	chr7	114944918	114944919	rs2023703	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	7q31.2	MDFIC, TFEC	rs2023703-C	0.33	8E-10		1.05	[1.05-1.06]	Illumina [at least 560000] (imputed)	N
1461	chr7	114944918	114944919	rs2023703	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	7q31.2	MDFIC, TFEC	rs2023703-?	NR	8E-10		1.055	[1.037-1.073]	Illumina [13757430] (imputed)	N
1461	chr7	114947111	114947112	rs12535004	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	7q31.2	MDFIC	rs12535004-T	0.7515	2E-9		0.015032493	[0.01-0.02] unit decrease	Affymetrix [11514654] (imputed)	N
1461	chr7	114948350	114948351	rs10270358	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol use disorder	57,564 European ancestry cases, 256,395 European ancestry controls	NA	7q31.2	NR	rs10270358-A	0.3182	2E-9		6.039	[NR] unit increase	Affymetrix [7003540] (imputed)	N
1462	chr7	114951430	114951430	rs141424017	30940813	Kranzler HR	2019-04-02	Nat Commun	Genome-wide association study of alcohol consumption and use disorder in 274,424 individuals from multiple populations.	Alcohol use disorder	34,658 European American cases, 167,346 European American controls, 17,267 African American cases, 39,381 African American controls, 3,449 Latino American cases, 10,726 Latino American controls, 164 East Asian American cases, 1,210 East Asian American controls, 46 South Asian American cases, 144 South Asian American controls	NA	7q31.2	MDF1C	rs141424017-T	0.222	3E-8	(EA)	1.059	[1.04-1.08]	Affymetrix [up to 12500000] (imputed)	N
1462	chr7	114959246	114959247	rs10261857	31467194	Ganna A	2019-08-01	Science	Large-scale GWAS reveals insights into the genetic architecture of same-sex sexual behavior.	same-sex sexual behaviour	188,825 European ancestry males, 220,170 European ancestry females	NA	7q31.2	NR	rs10261857-G	NR	1E-10		0.0027	unit increase	Affymetrix [NR] (imputed)	N
1462	chr7	114959246	114959247	rs10261857	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Cigarettes smoked per day (MTAG)	up to 403,928 European ancestry individuals	NA	7q31.2	NR	rs10261857-A	0.617	3E-8		0.0131482	[0.0085-0.0178] unit decrease	NR [9732723] (imputed)	N
1462	chr7	114961972	114961973	rs4521702	30745170	Strawbridge RJ	2019-02-07	EBioMedicine	Identification of novel genome-wide associations for suicidality in UK Biobank, genetic correlation with psychiatric disorders and polygenic association with completed suicide.	Deliberate self-harm	100,234 British ancestry individuals	NA	7q31.2	NR	rs4521702-T	NR	1E-7		0.01162	[-0.03111-0.05435] unit decrease	Affymetrix [9481578] (imputed)	N
1462	chr7	114969698	114969699	rs4476937	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Episodic memory (pairs-matching)	331,679 British ancestry individuals	NA	7q31.2		rs4476937-?	NR	5E-8				NR [7857346] (imputed)	N
1462	chr7	115002611	115002612	rs2106525	34719679	Hu SH	2021-10-31	Cell Discov	Discovery of new genetic loci for male sexual orientation in Han population.	Sexual orientation	408,995 European ancestry individuals, 4,791 Han Chinese ancestry individuals	NA	7q31.2		rs2106525-G	NR	6E-9		0.00234	[0.0016-0.0031] unit increase	Illumina [NR] (imputed)	N
1462	chr7	115002611	115002612	rs2106525	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	7q31.2	Intergenic	rs2106525-C	0.5525	2E-10	(MTAG)	0.0106	[0.0073-0.0139] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1462	chr7	115008062	115008063	rs4305836	33740410	Warrier V	2021-03-16	Lancet Psychiatry	Gene-environment correlations and causal effects of childhood maltreatment on physical and mental health: a genetically informed approach.	Childhood maltreatment	185,414 European ancestry individuals	NA	7q31.2	NR	rs4305836-C	0.5	3E-9		0.02	[0.014-0.026] unit increase	Affymetrix, Illumina [at least 500527] (imputed)	N
1462	chr7	115010157	115010158	rs4377898	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	7q31.2	MDFIC	rs4377898-A	0.4965	2E-11		0.015893605	[0.011-0.021] unit increase	Affymetrix [11515109] (imputed)	N
1462	chr7	115010157	115010158	rs4377898	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	7q31.2	MDFIC	rs4377898-A	0.499	8E-31		0.0136	[0.011-0.016] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
1462	chr7	115012090	115012091	rs73201924	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	7q31.2	NR	rs73201924-?	NR	6E-6		4.512	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1462	chr7	115020724	115020725	rs62474683	34861974	Mullins N	2021-09-09	Biol Psychiatry	Dissecting the Shared Genetic Architecture of Suicide Attempt, Psychiatric Disorders, and Known Risk Factors.	Suicide attempt	26,590 European ancestry cases, 492,022 European ancestry controls	NA	7q31.2		rs62474683-A	0.5	8E-11		1.06513	[1.05-1.08]	Affymetrix, Illumina [7700000] (imputed)	N
1462	chr7	115026458	115026459	rs10251192	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	7q31.2	MDFIC	rs10251192-T	0.5473	8E-15		0.015127294	[0.011-0.019] unit decrease	Illumina [9339358] (imputed)	N
1462	chr7	115026739	115026740	rs10267100	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	7q31.2	Intergenic	rs10267100-T	0.3497	1E-10	(MTAG)	0.012	[0.0083-0.0157] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1462	chr7	115026739	115026740	rs10267100	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	7q31.2	Intergenic	rs10267100-T	0.3497	3E-9		0.0122	[0.0083-0.0161] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1462	chr7	115027978	115027979	rs73201933	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	7q31.2	NA	rs73201933-T	0.4942	3E-8	(Female)	1.0416667	[1.03-1.06]	Affymetrix, Illumina [NR] (imputed)	N
1462	chr7	115030591	115030592	rs17137753	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	7q31.2		rs17137753-G	0.49	6E-19		0.011	[0.009-0.013] unit increase	NR [NR] (imputed)	N
1462	chr7	115057861	115057862	rs2401924	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	7q31.2		rs2401924-G	0.502	3E-14		0.015	[0.011-0.019] unit increase	Affymetrix [up to 90000000] (imputed)	N
1462	chr7	115057861	115057862	rs2401924	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	7q31.2	MDFIC	rs2401924-C	0.4978	2E-8		0.0145140365	[0.0095-0.0196] unit decrease	Affymetrix [~ 11515000] (imputed)	N
1462	chr7	115057861	115057862	rs2401924	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	7q31.2		rs2401924-?	NR	1E-12				NR [~ 8900000] (imputed)	N
1462	chr7	115077393	115077394	rs112913817	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	7q31.2	NR	rs112913817-G	0.0113	6E-15		0.0425293	[0.032-0.053] unit increase	NR [9732723] (imputed)	N
1462	chr7	115077393	115077394	rs112913817	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	7q31.2	NR	rs112913817-G	0.011318	9E-11	(Conditioned on chr7:114940159)	0.078055784	[0.054-0.102] unit increase	NR [~ 10000000] (imputed)	N
1463	chr7	115082405	115082406	rs12666306	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	7q31.2	NR	rs12666306-A	0.5017	2E-12		1.043	[1.03-1.05]	Affymetrix, Illumina [NR] (imputed)	N
1463	chr7	115092851	115092852	rs73204028	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	7q31.2	NR	rs73204028-?	NR	8E-6		0.0375	[0.021-0.054] unit decrease	Illumina [at least 560000] (imputed)	N
1463	chr7	115111837	115111838	rs1358391	30271922	Clifton EAD	2018-05-03	Commun Biol	Genome-wide association study for risk taking propensity indicates shared pathways with body mass index.	Smoking status (ever vs never smokers)	207,229 European ancestry ever smoker cases, 243,177 European ancestry never smoker controls	NA	7q31.2	NR	rs1358391-G	0.505524	9E-7		0.0050478	[0.003-0.0071] unit increase	Affymetrix [7736308] (imputed)	N
1463	chr7	115111837	115111838	rs1358391	30271922	Clifton EAD	2018-05-03	Commun Biol	Genome-wide association study for risk taking propensity indicates shared pathways with body mass index.	Self-reported risk-taking behaviour	113,882 European ancestry cases, 322,354 European ancestry controls	NA	7q31.2	SNORA25	rs1358391-G	0.51	2E-8		1.023	[1.015-1.031]	Affymetrix [7736308] (imputed)	N
1463	chr7	115111837	115111838	rs1358391	30181555	Strawbridge RJ	2018-09-04	Transl Psychiatry	Genetics of self-reported risk-taking behaviour, trans-ethnic consistency and relevance to brain gene expression.	Self-reported risk-taking behaviour	83,677 British ancestry cases, 244,662 British ancestry controls	2,764 South Asian ancestry cases, 3,139 African Caribbean ancestry cases, 16,169 European ancestry cases, 3,866 mixed ancestry cases, 4,267 South Asian ancestry controls, 4,341 African Caribbean ancestry controls, 31,814 European ancestry controls, 5,988 mixed ancestry controls	7q31.2	NR	rs1358391-T	0.49	1E-6		0.026	[0.016-0.036] unit decrease	Affymetrix [NR] (imputed)	N
1463	chr7	115118109	115118110	rs7800879	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	7q31.2	TFEC	rs7800879-C	0.577	2E-9		0.0072	[0.0048-0.0096] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
1463	chr7	115128486	115128487	rs76776296	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1b levels	8,243 Finnish ancestry individuals	NA	7q31.2	NR	rs76776296-G	NR	6E-7		0.2997	[0.18-0.42] SD units decrease	NR [10700000] (imputed)	N
1463	chr7	115138007	115138008	rs1918526	24665060	Argos M	2014-03-24	J Med Genet	Genome-wide association study of smoking behaviours among Bangladeshi adults.	Smoking cessation	366 Bangladeshi ancestry former smoker males, 87 Bangladeshi ancestry former smoker females, 1,471 Bangladeshi ancestry current smoker males, 111 Bangladeshi ancestry current smoker females	NA	7q31.2	NR	rs1918526-?		7E-6				Illumina [1211988] (imputed)	N
1463	chr7	115138714	115138715	rs6958690	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	7q31.2	TFEC	rs6958690-A	0.784	2E-8		0.0081	[0.0054-0.0108] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
1463	chr7	115190071	115190072	rs74507380	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	7q31.2		rs74507380-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1464	chr7	115300346	115300347	rs7799410	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	7q31.2	TFEC	rs7799410-A	0.1854	1E-8		0.01736528	[0.011-0.023] unit increase	Affymetrix [11515109] (imputed)	N
1464	chr7	115300604	115300605	rs17233551	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	7q31.2	TFEC	rs17233551-A	0.874	5E-8		0.0098	[0.0063-0.0133] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
1465	chr7	115368365	115368366	rs143665886	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	7q31.2	LINC01392, TFEC	rs143665886-C	0.413	9E-9	(Japanese)	0.022	[0.014-0.03] unit increase	Illumina [6108953] (imputed)	N
1465	chr7	115447642	115447643	rs4472446	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	7q31.2	TFEC	rs4472446-T	0.542	2E-8		0.0066	[0.0042-0.009] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
1466	chr7	115513815	115513816	rs77033896	30679421	Felsky D	2019-01-24	Nat Commun	Neuropathological correlates and genetic architecture of microglial activation in elderly human brain.	Proportion of activated microglia (inferior temporal cortex)	219 individuals	NA	7q31.2	TFEC, CAV1	rs77033896-A	0.0169	7E-7		0.1262	NR unit increase	NR [NR] (imputed)	N
1466	chr7	115557411	115557412	rs112371874	30942860	Shin J	2019-04-03	J Clin Endocrinol Metab	Novel genetic locus of visceral fat and systemic inflammation.	Visceral fat	1589 French-Canadian ancestry individuals	NA	7q31.2	Intergenic	rs112371874-T	NR	1E-6	(adjusted for subcutaneous fat)	0.327	[0.19-0.46] unit decrease	Illumina [8511049] (imputed)	N
1466	chr7	115566357	115566358	rs10666077	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	7q31.2	NR	rs10666077-?	NR	5E-6		10514.731	NR unit decrease	Illumina [2379855]	N
1466	chr7	115580892	115580893	rs34298819	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		TFEC	rs34298819-?	NR	2E-8	(female)	0.640933	[NR] unit increase	Affymetrix [NR] (imputed)	N
1467	chr7	115614460	115614460	rs572119521	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	7q31.2	TFEC	rs572119521-T	0.9105	1E-9		0.1574	[0.11-0.21] unit increase	Affymetrix [~ 11900000] (imputed)	N
1467	chr7	115665932	115665933	rs6972100	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	7q31.2	TFEC	rs6972100-A	0.0525290000000001	3E-9		0.030236635	[0.02-0.04] unit decrease	Affymetrix [93095623] (imputed)	N
1467	chr7	115665932	115665933	rs6972100	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	7q31.2	TES	rs6972100-?	NR	6E-7	(symmetric dimethylarginine)	0.39663592	[0.24-0.55] unit increase	Affymetrix [at least 2500000] (imputed)	N
1467	chr7	115669431	115669432	rs17302005	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	7q31.2	TFEC	rs17302005-G	0.176329	4E-10		0.018543849	[0.013-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1467	chr7	115673078	115673079	rs17302081	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	7q31.2	TFEC, TES	rs17302081-T	0.4414	8E-9		1.0222437		Affymetrix [11880941] (imputed)	N
1467	chr7	115678645	115678646	rs1113295	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	7q31.2		rs1113295-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1467	chr7	115680122	115680123	rs17302143	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q31.2	NR	rs17302143-G	0.201174	4E-14				Affymetrix, Illumina [24588908] (imputed)	N
1467	chr7	115682437	115682438	rs1965523	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or recurrent major depressive disorder x sex interaction	31,567 European ancestry schizophrenia cases,19,924 European ancestry bipolar disorder cases, 5,314 European ancestry recurrent major depressive disorder cases, 78,190 European ancestry controls, 1,836 East Asian ancestry schizophrenia cases, 3,383 East Asian ancestry controls	NA	7q31.2	TFEC, TES	rs1965523-A	0.3822	8E-6		0.0889	[0.05-0.128] unit increase	NR [NR] (imputed)	N
1467	chr7	115682437	115682438	rs1965523	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or major depressive disorder x sex interaction	31,567 European ancestry schizophrenia cases,19,924 European ancestry  bipolar disorder cases, 15,970 European ancestry major depressive disorder cases, 93,025 European ancestry controls, 1,836 East Asian ancestry schizophrenia cases, 3,383 East Asian ancestry controls	NA	7q31.2	TFEC, TES	rs1965523-A	0.3821	6E-6		0.0855	[0.048-0.123] unit increase	NR [NR] (imputed)	N
1467	chr7	115682437	115682438	rs1965523	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or major depressive disorder	11,361 European ancestry schizophrenia female cases, 20,206 European ancestry schizophrenia male cases, 11,897 European ancestry bipolar disorder female cases, 8,027 European ancestry bipolar disorder male cases, 10,865 European ancestry major depressive disorder female cases, 5,105 major depressive disorder male cases, 46,410 European ancestry female controls, 46,615 European ancestry male controls, 686 East Asian ancestry schizophrenia female cases, 1,907 East Asian ancestry female controls, 1,150 East Asian ancestry schizophrenia male cases, 1,476 East Asian ancestry male controls	NA	7q31.2	TFEC, TES	rs1965523-A	0.3821	9E-6	(male)	0.0598	[0.033-0.086] unit decrease	NR [NR] (imputed)	N
1467	chr7	115684408	115684409	rs6978514	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	7q31.2		rs6978514-T	0.559	5E-8		0.013	[0.0091-0.0169] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
1467	chr7	115706028	115706029	rs1917058	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	7q31.2	NR	rs1917058-C	0.176958	1E-13		0.017788	[0.013-0.022] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1468	chr7	115747256	115747257	rs142673483	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	7q31.2	TFEC	rs142673483-C	0.9816	5E-7		0.1392	[0.085-0.193] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1468	chr7	115810675	115810676	rs55892100	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Intraocular pressure	101,939 European ancestry cases	NA	7q31.2	NR	rs55892100-A		3E-19		0.14	[0.1-0.18] unit increase	NR [NR]	N
1468	chr7	115810675	115810676	rs55892100	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Intraocular pressure	133,492 European ancestry individuals	NA	7q31.2	TES	rs55892100-?	NR	2E-21		0.1291	[0.1-0.16] unit increase	Affymetrix, Illumina [up to 40000000] (imputed)	N
1468	chr7	115810675	115810676	rs55892100	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Glaucoma	11,018 European ancestry cases, 126,068 European ancestry controls	NA	7q31.2	TES	rs55892100-?	NR	5E-6		1.0782076	[1.04389613816996-1.11364676037976]	Affymetrix [up to 40000000] (imputed)	N
1468	chr7	115811435	115811436	rs2896175	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Intraocular pressure	133,492 European ancestry individuals	NA	7q31.2	TES	rs2896175-A	0.62	3E-17				Affymetrix, Illumina [8002429] (imputed)	N
1468	chr7	115811435	115811436	rs2896175	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Glaucoma	7,947 British ancestry cases, 119,318 British ancestry controls	NA	7q31.2	TES	rs2896175-A	0.62	8E-7		1.09	NR	Affymetrix [at least 8002429] (imputed)	N
1468	chr7	115811435	115811436	rs2896175	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	7q31.2	TFEC	rs2896175-A	0.615	1E-16		0.108	[0.083-0.133] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1468	chr7	115823383	115823384	rs6968419	29235454	Choquet H	2017-12-13	Nat Commun	A large multi-ethnic genome-wide association study identifies novel genetic loci for intraocular pressure.	Intraocular pressure	56,819 European ancestry individuals, 5,748 Hispanic/Latino individuals, 5,119 East Asian ancestry individuals, 2,070 African American individuals	37,930 European and Asian ancestry individuals	7q31.2	TFEC, TES	rs6968419-?	NR	2E-20		0.12	[NR] unit increase	Affymetrix [at least 665000] (imputed)	N
1468	chr7	115831259	115831260	rs11764793	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glaucoma	10,411 European ancestry cases, 474,568 European ancestry controls, 8,448 East Asian ancestry cases, 168,903 East Asian ancestry controls	NA	7q31.2		rs11764793-C	NR	1E-8		0.0683	[0.045-0.092] unit decrease	Affymetrix, Illumina [25844939] (imputed)	N
1468	chr7	115853502	115853503	rs2402056	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	7q31.2		rs2402056-A	0.42	2E-23		9.95	z score increase	Affymetrix [9061022] (imputed)	N
1468	chr7	115853502	115853503	rs2402056	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	7q31.2		rs2402056-A	0.42	3E-10		6.3	z score increase	Affymetrix [9061022] (imputed)	N
1468	chr7	115853502	115853503	rs2402056	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	7q31.2	NR	rs2402056-A	0.4193	2E-9				NR [9056863] (imputed)	N
1468	chr7	115856680	115856681	rs12666168	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	7q31.2	NR	rs12666168-C	0.2631	3E-10				NR [9056863] (imputed)	N
1469	chr7	115887000	115887001	rs73719150	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	7q31.2		rs73719150-T	0.33	4E-10		6.27	z score increase	Affymetrix [9061022] (imputed)	N
1469	chr7	115970621	115970622	rs12154695	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7q31.2		rs12154695-?	NR	1E-11				NR [~ 8900000] (imputed)	N
1470	chr7	116113743	116113744	rs28495552	29769521	Ramirez J	2018-05-16	Nat Commun	Thirty loci identified for heart rate response to exercise and recovery implicate autonomic nervous system.	Heart rate response to exercise	up to 35,455 European ancestry females, up to 31,802 European ancestry males	NA	7q31.2	CAV2	rs28495552-C	0.485	3E-11		0.403	[0.28-0.52] bpm decrease	Affymetrix [~ 7800000] (imputed)	N
1470	chr7	116113743	116113744	rs28495552	29769521	Ramirez J	2018-05-16	Nat Commun	Thirty loci identified for heart rate response to exercise and recovery implicate autonomic nervous system.	Heart rate response to exercise	up to 35,455 European ancestry females, up to 31,802 European ancestry males	NA	7q31.2	CAV2	rs28495552-C	0.482	4E-8	(females)	0.477	[0.31-0.65] bpm decrease	Affymetrix [~ 7800000] (imputed)	N
1470	chr7	116125171	116125172	rs12670840	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	7q31.2		rs12670840-T	NR	2E-8		0.0124	[0.0081-0.0167] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1471	chr7	116133097	116133098	rs17138749	32386560	Ramirez J	2020-04-29	Am J Hum Genet	Common Genetic Variants Modulate the Electrocardiographic Tpeak-to-Tend Interval.	TPE interval (resting)	71,338 European ancestry individuals	NA	7q31.2	CAV2	rs17138749-A	0.838	9E-9		0.04	[0.026-0.054] unit decrease	Affymetrix [~ 9000000] (imputed)	N
1471	chr7	116140930	116140931	rs28503222	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Intraocular pressure	31,269 European ancestry individuals	NA	7q31.2	CAV2	rs28503222-C	0.178	1E-9		0.211	[0.14-0.28] mmHg increase	Affymetrix, Illumina [12426120] (imputed)	N
1471	chr7	116141777	116141778	rs3779511	31447353	Maciukiewicz M	2019-08-22	Schizophr Res	Genome-wide association study on antipsychotic-induced weight gain in Europeans and African-Americans.	Antipsychotic drug-induced weight gain in schizophrenia	144 European ancestry individuals, 57 African American individuals	NA	7q31.2	CAV2	rs3779511-?	NR	4E-6		4.605	z-score increase	Illumina [1819374] (imputed)	N
1471	chr7	116143661	116143662	rs10233003	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Intraocular pressure	101,939 European ancestry cases	NA	7q31.2	NR	rs10233003-A		2E-49		0.24	[0.2-0.28] unit increase	NR [NR]	N
1471	chr7	116143661	116143662	rs10233003	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	7q31.2	CAV2	rs10233003-C	0.7269	2E-48		0.226	[0.2-0.26] unit decrease	Affymetrix [~ 11900000] (imputed)	N
1471	chr7	116146073	116146074	rs8940	33975060	Zhu Y	2021-05-07	Eur J Cancer	A genetic variant conferred high expression of CAV2 promotes pancreatic cancer progression and associates with poor prognosis.	Pancreatic ductal adenocarcinoma	518 Han Chinese ancestry cases	552 Han Chinese ancestry cases	7q31.2	CAV2	rs8940-G		3E-6	(dominant)	2.72	[1.79-4.13]	Illumina [Exome array]	N
1471	chr7	116147907	116147908	rs4727833	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Ischemic stroke (cardioembolic)	7,193 European ancestry cases, 406,111 European ancestry controls, 847 East Asian ancestry cases, 28,195 East Asian ancestry controls, 422 South Asian ancestry cases, 6,707 South Asian ancestry controls, 414 African American cases, 15,146 African American controls, 31 Asian ancestry cases, 333 Asian ancestry controls, 99 Latin American cases, 692 Latin American controls	NA	7q31.2	CAV1, CAV2	rs4727833-G	0.51	2E-7		1.09	[1.06-1.13]	NR [~ 8000000] (imputed)	N
1471	chr7	116148369	116148370	rs1052990	31447353	Maciukiewicz M	2019-08-22	Schizophr Res	Genome-wide association study on antipsychotic-induced weight gain in Europeans and African-Americans.	Antipsychotic drug-induced weight gain in schizophrenia	144 European ancestry individuals, 57 African American individuals	NA	7q31.2	CAV2	rs1052990-?	NR	2E-6		4.764	z-score increase	Illumina [1819374] (imputed)	N
1471	chr7	116150094	116150095	rs10258482	29235454	Choquet H	2017-12-13	Nat Commun	A large multi-ethnic genome-wide association study identifies novel genetic loci for intraocular pressure.	Intraocular pressure	56,819 European ancestry individuals, 5,748 Hispanic/Latino individuals, 5,119 East Asian ancestry individuals, 2,070 African American individuals	37,930 European and Asian ancestry individuals	7q31.2	CAV1	rs10258482-?	NR	2E-14		0.13	[NR] unit decrease	Affymetrix [at least 665000] (imputed)	N
1471	chr7	116150094	116150095	rs10258482	25173106	Hysi PG	2014-08-31	Nat Genet	Genome-wide analysis of multi-ancestry cohorts identifies new loci influencing intraocular pressure and susceptibility to glaucoma.	Intraocular pressure	7,738 Asian ancestry individuals, 27,558 European ancestry individuals	NA	7q31.2	CAV1, CAV2	rs10258482-A	NR	2E-11		0.196	[0.14-0.25] mm Hg increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1471	chr7	116150951	116150952	rs10262524	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	8,758 European ancestry cases, 108,815 European ancestry controls, 1,996 East Asian ancestry cases, 16,559  East Asian ancestry controls, 171 Sub-Saharan African ancestry cases, 94 Sub-Saharan African ancestry controls	NA	7q31.2	CAV2	rs10262524-A	NR	3E-14		1.15604	[1.12-1.19]	Illumina [NR] (imputed)	N
1471	chr7	116151337	116151338	rs10281637	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Intraocular pressure	133,492 European ancestry individuals	NA	7q31.2	CAV2	rs10281637-?	NR	2E-55		0.2235	[0.2-0.25] unit decrease	Affymetrix, Illumina [up to 40000000] (imputed)	N
1471	chr7	116151337	116151338	rs10281637	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Glaucoma	11,018 European ancestry cases, 126,068 European ancestry controls	NA	7q31.2	CAV2	rs10281637-?	NR	1E-11		1.1213126	[1.08-1.16]	Affymetrix [up to 40000000] (imputed)	N
1471	chr7	116151337	116151338	rs10281637	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	7q31.2	CAV2	rs10281637-T	0.727	3E-56		0.225	[0.2-0.25] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1471	chr7	116151337	116151338	rs10281637	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Intraocular pressure	25,916 European ancestry individuals, 1,073 Orcadian (founder/genetic isolate) individuals, 2,589 Erasmus Rucphen (founder/genetic isolate) individuals	8,352 Asian ancestry individuals	7q31.2	CAV1, CAV2	rs10281637-C	NR	4E-13		0.2	[0.14-0.26] unit increase	Affymetrix, Illumina [~ 8000000] (imputed)	N
1471	chr7	116151337	116151338	rs10281637	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Intraocular pressure	25,916 European ancestry individuals, 1,073 Orcadian (founder/genetic isolate) individuals, 2,589 Erasmus Rucphen (founder/genetic isolate) individuals	8,352 Asian ancestry individuals	7q31.2	CAV1, CAV2	rs10281637-C	NR	1E-11	(EA)	0.2	[0.14-0.26] unit increase	Affymetrix, Illumina [~ 8000000] (imputed)	N
1471	chr7	116153024	116153025	rs2024211	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	9,179 European ancestry cases, 134,471 European ancestry controls, 1,983 East Asian ancestry cases, 13,719 East Asian ancestry controls, 127 Sub-Saharan African ancestry cases, 100 Sub-Saharan African ancestry controls	NA	7q31.2	CAV2	rs2024211-A	NR	1E-12		0.86988	[0.83-0.91]	Illumina [NR] (imputed)	N
1471	chr7	116153024	116153025	rs2024211	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	7q31.2	CAV2, CAV1	rs2024211-?		6E-10				Affymetrix, Illumina [NR] (imputed)	N
1471	chr7	116153024	116153025	rs2024211	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Glaucoma	11,018 European ancestry cases, 126,068 European ancestry controls	NA	7q31.2	CAV1, CAV2	rs2024211-A	NR	9E-12		1.1111112	[1.08-1.16]	Affymetrix [up to 40000000] (imputed)	N
1471	chr7	116154185	116154186	rs17516287	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	7q31.2	CAV2, CAV1	rs17516287-C	0.66	8E-32	(EA)	1.1		Affymetrix, Illumina [up to 12149979] (imputed)	N
1471	chr7	116154830	116154831	rs6969706	29891935	Choquet H	2018-06-11	Nat Commun	A multiethnic genome-wide association study of primary open-angle glaucoma identifies novel risk loci.	Glaucoma (primary open-angle)	10,523 European ancestry cases, 203,579 European ancestry controls, 411 Hispanic cases, 4,778 Hispanic controls, 463 East Asian ancestry cases, 4,907 East Asian ancestry controls, 298 African American cases, 1,549 African American controls, 204 South Asian ancestry cases, 4,916 South Asian ancestry controls, 272 African British cases, 4,831 African British controls, 144 mixed ancestry cases, 3,427 mixed ancestry controls	NA	7q31.2	CAV2, CAV1	rs6969706-T	NR	4E-12		1.1111112	[1.08-1.14]	Affymetrix [at least 665500] (imputed)	N
1471	chr7	116156022	116156023	rs59454355	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Intraocular pressure	133,492 European ancestry individuals	NA	7q31.2	CAV2	rs59454355-C	0.73	7E-57				Affymetrix, Illumina [8002429] (imputed)	N
1471	chr7	116156022	116156023	rs59454355	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Glaucoma (multi-trait analysis)	133,492 European ancestry individuals with intraocular pressure measurements, 90,939 European ancestry individuals with vertical cup-disc ratio measurements, 7,947 British ancestry glaucoma cases, 119,318 British ancestry controls	6,924 European ancestry glaucoma cases, 40,230 European ancestry controls	7q31.2	CAV2	rs59454355-G	0.27	4E-49		1.1904762	NR	Affymetrix, Illumina [8002429] (imputed)	N
1471	chr7	116156022	116156023	rs59454355	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Glaucoma	7,947 British ancestry cases, 119,318 British ancestry controls	NA	7q31.2	CAV2	rs59454355-G	0.27	1E-9		1.1235955	NR	Affymetrix [at least 8002429] (imputed)	N
1471	chr7	116159525	116159526	rs12540035	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	16,677 European ancestry cases, 199,580 European ancestry controls	7,286 European ancestry cases, 107,362 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	7q31.2	CAV2, CAV1	rs12540035-A	NR	3E-16		1.12479	[1.1-1.15]	Affymetrix, Illumina [14822926] (imputed)	N
1471	chr7	116159960	116159961	rs2109514	29769521	Ramirez J	2018-05-16	Nat Commun	Thirty loci identified for heart rate response to exercise and recovery implicate autonomic nervous system.	Heart rate response to recovery post exercise	up to 35,455 European ancestry females, up to 31,802 European ancestry males	NA	7q31.2	CAV2	rs2109514-G	0.501	7E-10		0.334	[0.23-0.44] bpm decrease	Affymetrix [~ 7800000] (imputed)	N
1471	chr7	116159960	116159961	rs2109514	29497042	Verweij N	2018-03-01	Nat Commun	Genetic study links components of the autonomous nervous system to heart-rate profile during exercise.	Heart rate increase in response to exercise	5,4137 European ancestry individuals, 1,744 Asian ancestry individuals, 1,445 African ancestry individuals, 468 admixed individuals, 1,024 individuals	NA	7q31.2	CAV1, CAV2	rs2109514-G	0.500651	2E-9		0.0345597	[0.023-0.046] unit decrease	Affymetrix [509255] (imputed)	N
1471	chr7	116159960	116159961	rs2109514	28416818	Christophersen IE	2017-04-17	Nat Genet	Large-scale analyses of common and rare variants identify 12 new loci associated with atrial fibrillation.	Prevalent atrial fibrillation	8,656 European ancestry cases, 102,776 European ancestry controls.		7q31.2	CAV1/2	rs2109514-A	0.51	7E-13		1.15	1.11-1.19	Affymetrix, Illumina [at least 3187278] (imputed)	N
1471	chr7	116162305	116162306	rs10257125	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	23,963 European ancestry cases, 306,942 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	43,254 European ancestry cases, 1,471,118 European ancestry controls	7q31.2	CAV1	rs10257125-A	NR	2E-24		0.0795	unit decrease	Illumina [15409056] (imputed)	N
1471	chr7	116162728	116162729	rs4236601	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	7q31.2	CAV2, CAV1	rs4236601-G	0.7311	1E-42		0.222	[0.19-0.25] unit decrease	Affymetrix [~ 11900000] (imputed)	N
1471	chr7	116162728	116162729	rs4236601	29235454	Choquet H	2017-12-13	Nat Commun	A large multi-ethnic genome-wide association study identifies novel genetic loci for intraocular pressure.	Intraocular pressure	56,819 European ancestry individuals, 5,748 Hispanic/Latino individuals, 5,119 East Asian ancestry individuals, 2,070 African American individuals	37,930 European and Asian ancestry individuals	7q31.2	CAV1	rs4236601-?	NR	2E-14		0.13	[NR] unit decrease	Affymetrix [at least 665000] (imputed)	N
1471	chr7	116162728	116162729	rs4236601	25173105	Gharahkhani P	2014-08-31	Nat Genet	Common variants near ABCA1, AFAP1 and GMDS confer risk of primary open-angle glaucoma.	Glaucoma (primary open-angle)	1,155 European ancestry cases, 1,922 European ancestry controls	3,548 European ancestry cases, 9,496 European ancestry controls	7q31.2	CAV1, CAV2	rs4236601-A	NR	5E-7		1.2	[1.12-1.28]	Illumina [7594768] (imputed)	N
1471	chr7	116162728	116162729	rs4236601	20835238	Thorleifsson G	2010-09-12	Nat Genet	Common variants near CAV1 and CAV2 are associated with primary open-angle glaucoma.	Glaucoma (primary open-angle)	1,263 European ancestry cases, 34,887 European ancestry controls	2,175 European ancestry cases, 2,064 European ancestry controls	7q31.2	CAV1, CAV2	rs4236601-A	0.23	2E-11		1.27	[1.18-1.36]	Illumina [303117]	N
1471	chr7	116186240	116186241	rs3807989	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	7q31.2		rs3807989-G	NR	4E-12		0.0129	[0.0092-0.0166] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
1471	chr7	116186240	116186241	rs3807989	32602732	Baldassari AR	2020-06-30	Circ Genom Precis Med	Multi-ethnic Genome-wide Association Study of Decomposed Cardioelectric Phenotypes Illustrates Strategies to Identify and Characterize Evidence of Shared Genetic Effects for Complex Traits.	Electrocardiographic traits (multivariate)	17,873 European ancestry individuals, 12,749 Hispanic individuals, 5,408 African American individuals, 315 Chinese-American individuals	NA	7q31.2	CAV1	rs3807989-?	NR	1E-11				Affymetrix, Illumina [22000000] (imputed)	N
1471	chr7	116186240	116186241	rs3807989	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	7q31.2	CAV1, CAV2	rs3807989-A	0.4139	6E-15	(Hispanic/Latino)	2.1013	[1.57-2.63] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1471	chr7	116186240	116186241	rs3807989	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	7q31.2	CAV1, CAV2	rs3807989-A	0.4132	3E-194		1.9151	[1.79-2.04] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1471	chr7	116186240	116186241	rs3807989	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	PR interval	3,360 African American individuals, 13,702 Hispanic/Latino individuals, 129 Asian ancestry individuals, 231 Native American ancestry individuals	NA	7q31.2	NR	rs3807989-?	NR	7E-21		2.189749	[1.73-2.65] unit decrease	Illumina [26703325] (imputed)	N
1471	chr7	116186240	116186241	rs3807989	30046033	van Setten J	2018-07-25	Nat Commun	PR interval genome-wide association meta-analysis identifies 50 loci associated with atrial and atrioventricular electrical activity.	PR interval	92,340 European ancestry individuals	NA	7q31.2	CAV1, CAV2	rs3807989-A	0.41	9E-69		2.0	[1.76-2.24] ms increase	Affymetrix, Illumina [2712613] (imputed)	N
1471	chr7	116186240	116186241	rs3807989	30012220	Prins BP	2018-07-17	Genome Biol	Exome-chip meta-analysis identifies novel loci associated with cardiac conduction, including ADAMTS6.	QRS duration	up to 77,898 European ancestry individuals, up to 7,695 African American individuals	up to 111,874 European ancestry individuals	7q31.2	CAV1	rs3807989-A	0.415827	2E-31		0.384195	[0.32-0.45] ms increase	Illumina [162199]	N
1471	chr7	116186240	116186241	rs3807989	30012220	Prins BP	2018-07-17	Genome Biol	Exome-chip meta-analysis identifies novel loci associated with cardiac conduction, including ADAMTS6.	QRS duration	77,898 European ancestry individuals	NA	7q31.2	CAV1	rs3807989-A	0.404984723124038	3E-18		0.400425	[0.31-0.49] ms increase	Illumina [213295]	N
1471	chr7	116186240	116186241	rs3807989	29127183	Seyerle AA	2017-11-10	Heart	Genome-wide association study of PR interval in Hispanics/Latinos identifies novel locus at ID2.	PR interval	14,756 Hispanic individuals	4,296 European ancestry individuals, 3,763 African American individuals, 6,805 East Asian ancestry individuals	7q31.2	CAV1, CAV2	rs3807989-A	0.41	2E-18	(Hispanic)	2.18	[1.69-2.67] ms increase	Affymetrix, Illumina [18828993] (imputed)	N
1471	chr7	116186240	116186241	rs3807989	25055868	Sano M	2014-07-23	Hum Mol Genet	Genome-wide association study of electrocardiographic parameters identifies a new association for PR interval and confirms previously reported associations.	Electrocardiographic traits	2,994 Japanese ancestry individuals	6,805 Korean ancestry individuals	7q31.2	CAV1	rs3807989-A	0.337	2E-6	(PR)	2.423	[NR] unit increase	Illumina [~ 2500000]	N
1471	chr7	116186240	116186241	rs3807989	24850809	Verweij N	2014-05-21	Circ Cardiovasc Genet	Genetic determinants of P wave duration and PR segment.	PR segment duration	16,468 European ancestry individuals	NA	7q31.2	CAV1, MET	rs3807989-A	0.435	5E-12		1.396	[1.00-1.79] unit increase	Illumina [2300000] (imputed)	N
1471	chr7	116186240	116186241	rs3807989	22544366	Ellinor PT	2012-04-29	Nat Genet	Meta-analysis identifies six new susceptibility loci for atrial fibrillation.	Atrial fibrillation	6,707 European ancestry cases, 52,426 European ancestry controls	5,381 European ancestry casses, 10,030 European ancestry  controls	7q31.2	CAV1	rs3807989-G	0.60	4E-12		1.11	[1.09-1.15]	Affymetrix, Illumina [~ 2500000] (imputed)	N
1471	chr7	116186240	116186241	rs3807989	20062063	Holm H	2010-01-10	Nat Genet	Several common variants modulate heart rate, PR interval and QRS duration.	Electrocardiographic traits	Up to 12,670 European ancestry individuals	Up to 10,352 European ancestry individuals	7q31.2	CAV1	rs3807989-A	0.40	7E-13	(PR interval)	6.4	[4.65-8.15] % s.d. increase	Illumina [306060]	N
1471	chr7	116186240	116186241	rs3807989	20062060	Pfeufer A	2010-01-10	Nat Genet	Genome-wide association study of PR interval.	PR interval	28,517 European ancestry individuals	NA	7q31.2	CAV1, CAV2	rs3807989-A	0.40	4E-28		2.3	[1.89-2.71] ms increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1471	chr7	116189375	116189376	rs13242816	28794112	Christophersen IE	2017-08-01	Circ Cardiovasc Genet	Fifteen Genetic Loci Associated With the Electrocardiographic P Wave.	P wave duration	37,678 European ancestry individuals, 6,778 African ancestry individuals	NA	7q31.2	CAV1, CAV2	rs13242816-T	0.08	8E-11	(EA)	1.21	[0.84-1.58] ms increase	Affymetrix, Illumina [at least 2402234] (imputed)	N
1471	chr7	116190596	116190597	rs3801995	28794112	Christophersen IE	2017-08-01	Circ Cardiovasc Genet	Fifteen Genetic Loci Associated With the Electrocardiographic P Wave.	P wave duration	37,678 European ancestry individuals, 6,778 African ancestry individuals	NA	7q31.2	CAV1, CAV2	rs3801995-T	0.26	1E-10		0.6	[0.42-0.78] ms increase	Affymetrix, Illumina [at least 2402234] (imputed)	N
1471	chr7	116191300	116191301	rs11773845	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atrial fibrillation/atrial flutter	29,212 European ancestry cases, 400,539 European ancestry controls, 4,150 East Asian ancestry cases, 155,540 East Asian ancestry controls	NA	7q31.2		rs11773845-A	NR	8E-31		0.1094	[0.091-0.128] unit increase	Affymetrix, Illumina [25830072] (imputed)	N
1471	chr7	116191300	116191301	rs11773845	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	PR interval	3,360 African American individuals, 13,702 Hispanic/Latino individuals, 129 Asian ancestry individuals, 231 Native American ancestry individuals	NA	7q31.2	NR	rs11773845-?	NR	1E-20		2.181136	[1.72-2.64] unit decrease	Illumina [26703325] (imputed)	N
1471	chr7	116191300	116191301	rs11773845	30679814	van Setten J	2019-01-24	Eur J Hum Genet	Genome-wide association meta-analysis of 30,000 samples identifies seven novel loci for quantitative ECG traits.	PR interval	2,370 Erasmus Rucphen Family (founder/genetic isolate) individuals, 29,325 European ancestry individuals	391 Carlantino (founder/genetic isolate) individuals, 981 Friuli Venezia Giulia (founder/genetic isolate) individuals, 31,033 European ancestry individuals, 2,070 African American individuals	7q31.2	CAV1	rs11773845-A	0.573	9E-28		2.012	[1.65-2.37] unit decrease	Affymetrix, Illumina [at least 19000000] (imputed)	N
1471	chr7	116191300	116191301	rs11773845	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	7q31.2	CAV1, CAV2	rs11773845-A	0.586	2E-55		1.11	[1.10-1.13]	Illumina [34740186] (imputed)	N
1471	chr7	116191300	116191301	rs11773845	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	7q31.2	CAV1	rs11773845-A	0.6	2E-50	(EA)	1.12	[1.11-1.14]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1471	chr7	116191300	116191301	rs11773845	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	7q31.2	CAV1	rs11773845-A	0.59	5E-58		1.12	[1.11-1.14]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1471	chr7	116191300	116191301	rs11773845	28416818	Christophersen IE	2017-04-17	Nat Genet	Large-scale analyses of common and rare variants identify 12 new loci associated with atrial fibrillation.	Atrial fibrillation	15,979 European ancestry cases, 102,776 European ancestry controls.	NA	7q31.2	CAV1/2	rs11773845-A	0.6	3E-13		1.1	[1.07-1.13]	Affymetrix, Illumina [11795432] (imputed)	N
1471	chr7	116191300	116191301	rs11773845	25035420	Hong KW	2014-07-17	Hum Mol Genet	Identification of three novel genetic variations associated with electrocardiographic traits (QRS duration and PR interval) in East Asians.	PR interval	6,085 Korean ancestry individuals	7,295 Japanese ancestry individuals	7q31.2	CAV1, CAV2	rs11773845-C	0.34	3E-14		3.21	[2.39-4.03] unit increase	Affymetrix [2100000] (imputed)	N
1471	chr7	116191300	116191301	rs11773845	23139255	Butler AM	2012-11-08	Circ Cardiovasc Genet	Novel loci associated with PR interval in a genome-wide association study of 10 African American cohorts.	PR interval	13,415 African American individuals	NA	7q31.2	CAV1	rs11773845-A	0.36	4E-12		2.29	[1.64-2.94] unit decrease	Affymetrix, Illumina [2845108] (imputed)	N
1471	chr7	116191696	116191697	rs9886216	33990960	Hong M	2021-05-14	Eur J Clin Invest	Ethnic similarities in genetic polymorphisms associated with atrial fibrillation: Far East Asian vs European populations.	Atrial fibrillation	9,118 East Asian ancestry cases, 33,467 East Asian ancestry controls	NA	7q31.2	CAV1, CAV2	rs9886216-A	NR	5E-17		1.21	[1.16-1.26]	NR [2286360] (imputed)	N
1471	chr7	116192329	116192330	rs75022895	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	7q31.2		rs75022895-T	NR	3E-18		0.0376	[0.029-0.046] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
1471	chr7	116194904	116194905	rs729949	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Arrhythmia	17,861 Japanese ancestry cases, 194,592 Japanese ancestry controls	NA	7q31.2		rs729949-A	0.289654326	4E-13		0.91340876	[0.891313612-0.936051587]	Illumina [8919992] (imputed)	N
1471	chr7	116198620	116198621	rs1997571	34274964	Duijvenboden S	2021-07-19	Hum Mol Genet	Genomic and pleiotropic analyses of resting QT interval identifies novel loci and overlap with atrial electrical disorders.	QT interval	24,495 European ancestry men	NA	7q31.2		rs1997571-G	0.41	2E-9		0.036	[0.024-0.048] unit increase	Affymetrix [NR]	N
1471	chr7	116198620	116198621	rs1997571	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q31.2	CAV1	rs1997571-G	0.415712	7E-41	(-96 ms)	0.0757325	[0.065-0.087] unit decrease	Affymetrix [10000000] (imputed)	N
1471	chr7	116198620	116198621	rs1997571	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q31.2	CAV1	rs1997571-G	0.415712	6E-26	(-118 ms)	0.0589567	[0.048-0.07] unit decrease	Affymetrix [10000000] (imputed)	N
1471	chr7	116198620	116198621	rs1997571	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q31.2	CAV1	rs1997571-G	0.415712	4E-29	(-116 ms)	0.0627353	[0.052-0.074] unit decrease	Affymetrix [10000000] (imputed)	N
1471	chr7	116198620	116198621	rs1997571	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q31.2	CAV1	rs1997571-G	0.415712	3E-42	(-100 ms)	0.0770659	[0.066-0.088] unit decrease	Affymetrix [10000000] (imputed)	N
1471	chr7	116198620	116198621	rs1997571	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q31.2	CAV1	rs1997571-G	0.415712	3E-35	(-112 ms)	0.0702371	[0.059-0.081] unit decrease	Affymetrix [10000000] (imputed)	N
1471	chr7	116198620	116198621	rs1997571	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q31.2	CAV1	rs1997571-G	0.415712	3E-32	(-114 ms)	0.0666178	[0.055-0.078] unit decrease	Affymetrix [10000000] (imputed)	N
1471	chr7	116198620	116198621	rs1997571	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q31.2	CAV1	rs1997571-G	0.415712	2E-42	(-104 ms)	0.0774908	[0.066-0.089] unit decrease	Affymetrix [10000000] (imputed)	N
1471	chr7	116198620	116198621	rs1997571	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q31.2	CAV1	rs1997571-G	0.415712	2E-39	(-94 ms)	0.0745223	[0.063-0.086] unit decrease	Affymetrix [10000000] (imputed)	N
1471	chr7	116198620	116198621	rs1997571	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q31.2	CAV1	rs1997571-G	0.415712	2E-39	(-108 ms)	0.0740209	[0.063-0.085] unit decrease	Affymetrix [10000000] (imputed)	N
1471	chr7	116198620	116198621	rs1997571	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q31.2	CAV1	rs1997571-G	0.415712	2E-37	(-110 ms)	0.0724872	[0.061-0.084] unit decrease	Affymetrix [10000000] (imputed)	N
1471	chr7	116198620	116198621	rs1997571	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q31.2	CAV1	rs1997571-G	0.415712	1E-41	(-98 ms)	0.076545	[0.065-0.088] unit decrease	Affymetrix [10000000] (imputed)	N
1471	chr7	116198620	116198621	rs1997571	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q31.2	CAV1	rs1997571-G	0.415712	1E-41	(-106 ms)	0.0761849	[0.065-0.087] unit decrease	Affymetrix [10000000] (imputed)	N
1471	chr7	116198620	116198621	rs1997571	29497042	Verweij N	2018-03-01	Nat Commun	Genetic study links components of the autonomous nervous system to heart-rate profile during exercise.	Heart rate response to recovery post exercise (50 sec)	5,4137 European ancestry individuals, 1,744 Asian individuals, 1,445 African individuals, 468 admixed individuals, 1,024 individuals	NA	7q31.2	CAV1, CAV2	rs1997571-G	0.41549	3E-10		0.0372285	[0.026-0.049] unit decrease	Affymetrix [509255] (imputed)	N
1471	chr7	116198620	116198621	rs1997571	29497042	Verweij N	2018-03-01	Nat Commun	Genetic study links components of the autonomous nervous system to heart-rate profile during exercise.	Heart rate response to recovery post exercise (40 sec)	5,4137 European ancestry individuals, 1,744 Asian individuals, 1,445 African individuals, 468 admixed individuals, 1,024 individuals	NA	7q31.2	CAV1, CAV2	rs1997571-G	0.41544	8E-11		0.0383871	[0.027-0.05] unit decrease	Affymetrix [509255] (imputed)	N
1471	chr7	116198620	116198621	rs1997571	29497042	Verweij N	2018-03-01	Nat Commun	Genetic study links components of the autonomous nervous system to heart-rate profile during exercise.	Heart rate response to recovery post exercise (30 sec)	5,4137 European ancestry individuals, 1,744 Asian individuals, 1,445 African individuals, 468 admixed individuals, 1,024 individuals	NA	7q31.2	CAV1, CAV2	rs1997571-G	0.415459	2E-12		0.0415063	[0.03-0.053] unit decrease	Affymetrix [509255] (imputed)	N
1471	chr7	116198620	116198621	rs1997571	29497042	Verweij N	2018-03-01	Nat Commun	Genetic study links components of the autonomous nervous system to heart-rate profile during exercise.	Heart rate response to recovery post exercise (20 sec)	5,4137 European ancestry individuals, 1,744 Asian individuals, 1,445 African individuals, 468 admixed individuals, 1,024 individuals	NA	7q31.2	CAV1, CAV2	rs1997571-G	0.415481	2E-12		0.0417419	[0.03-0.053] unit decrease	Affymetrix [509255] (imputed)	N
1471	chr7	116198620	116198621	rs1997571	29497042	Verweij N	2018-03-01	Nat Commun	Genetic study links components of the autonomous nervous system to heart-rate profile during exercise.	Heart rate response to recovery post exercise (10 sec)	5,4137 European ancestry individuals, 1,744 Asian individuals, 1,445 African individuals, 468 admixed individuals, 1,024 individuals	NA	7q31.2	CAV1, CAV2	rs1997571-G	0.415592	2E-12		0.0414506	[0.03-0.053] unit decrease	Affymetrix [509255] (imputed)	N
1471	chr7	116198827	116198828	rs1997572	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	7q31.2		rs1997572-G	NR	5E-8		0.0105	[0.0068-0.0142] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
1471	chr7	116198827	116198828	rs1997572	28416818	Christophersen IE	2017-04-17	Nat Genet	Large-scale analyses of common and rare variants identify 12 new loci associated with atrial fibrillation.	Atrial fibrillation	15,979 European ancestry cases, 102,776 European ancestry controls, 641 African American cases, 5,234 African American controls, 837 Japanese ancestry cases, 3,293 Japanese controls, 277 Hispanic cases, 3,081 Hispanic controls,197 Brazilian ancestry cases, 758 Brazilian ancestry controls.	8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls.	7q31.2	CAV1/2	rs1997572-G	0.59	7E-15		1.1	[1.08-1.17]	Affymetrix, Illumina [11795432] (imputed)	N
1471	chr7	116198827	116198828	rs1997572	28416818	Christophersen IE	2017-04-17	Nat Genet	Large-scale analyses of common and rare variants identify 12 new loci associated with atrial fibrillation.	Atrial fibrillation	15,979 European ancestry cases, 102,776 European ancestry controls, 641 African American cases, 5,234 African American controls, 837 Japanese ancestry cases, 3,293 Japanese controls, 277 Hispanic cases, 3,081 Hispanic controls,197 Brazilian ancestry cases, 758 Brazilian ancestry controls.	3,666 cases, 139,852 controls	7q31.2	CAV1/2	rs1997572-G	0.59	5E-9		1.16	[1.11-1.22]	Affymetrix, Illumina [11795432] (imputed)	N
1471	chr7	116200091	116200092	rs9920	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	7q31.2		rs9920-T	0.895	1E-11				Affymetrix [10369434] (imputed)	N
1471	chr7	116200091	116200092	rs9920	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	7q31.2		rs9920-T	0.895	4E-10				Affymetrix [10369434] (imputed)	N
1471	chr7	116200091	116200092	rs9920	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	7q31.2	CAV1	rs9920-C	0.105114	2E-28		0.040418126	[0.033-0.048] unit increase	Affymetrix [93095623] (imputed)	N
1471	chr7	116200091	116200092	rs9920	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	7q31.2	CAV1	rs9920-C	0.105119	1E-23		0.03662691	[0.029-0.044] unit increase	Affymetrix [93095623] (imputed)	N
1471	chr7	116200091	116200092	rs9920	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	7q31.2	CAV1	rs9920-C	0.105137	5E-10		0.02290979	[0.016-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
1471	chr7	116200091	116200092	rs9920	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	7q31.2	CAV1	rs9920-C	0.105126	3E-10		0.0227298	[0.016-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
1471	chr7	116200091	116200092	rs9920	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	7q31.2	CAV1	rs9920-C	0.105124	5E-13		0.026084507	[0.019-0.033] unit increase	Affymetrix [93095623] (imputed)	N
1471	chr7	116200091	116200092	rs9920	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	7q31.2	CAV1	rs9920-C	0.105129	2E-21		0.03429567	[0.027-0.041] unit increase	Affymetrix [93095623] (imputed)	N
1471	chr7	116200091	116200092	rs9920	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	7q31.2	CAV1	rs9920-C	0.1051	7E-15		0.028511764	[0.021-0.036] unit increase	Affymetrix [93095623] (imputed)	N
1471	chr7	116200091	116200092	rs9920	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	7q31.2	CAV1	rs9920-C	0.105061	1E-32		0.04324933	[0.036-0.05] unit increase	Affymetrix [93095623] (imputed)	N
1471	chr7	116200091	116200092	rs9920	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	7q31.2	CAV1	rs9920-C	0.105067	1E-28		0.040349677	[0.033-0.047] unit increase	Affymetrix [93095623] (imputed)	N
1471	chr7	116200091	116200092	rs9920	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q31.2	NR	rs9920-C	0.101441	2E-18				Affymetrix, Illumina [23472807] (imputed)	N
1471	chr7	116200091	116200092	rs9920	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	7q31.2	NR	rs9920-C	0.104682	2E-21		0.02939	[0.023-0.035] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1471	chr7	116200091	116200092	rs9920	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	7q31.2	CAV1	rs9920-C	0.1051	1E-24		0.06028422	[0.049-0.072] unit increase	Affymetrix [~ 2500000] (imputed)	N
1471	chr7	116200091	116200092	rs9920	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	7q31.2	CAV1	rs9920-C	0.1051	1E-20		0.05477451	[0.043-0.066] unit increase	Affymetrix [~ 2500000] (imputed)	N
1471	chr7	116200091	116200092	rs9920	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	7q31.2	CAV1	rs9920-C	0.1051	7E-9		0.03369321	[0.022-0.045] unit increase	Affymetrix [~ 2500000] (imputed)	N
1471	chr7	116200091	116200092	rs9920	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	7q31.2	CAV1	rs9920-C	0.1051	6E-22		0.05654402	[0.045-0.068] unit increase	Affymetrix [~ 2500000] (imputed)	N
1471	chr7	116200091	116200092	rs9920	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	7q31.2	CAV1	rs9920-C	0.1051	1E-19		0.05312012	[0.042-0.065] unit increase	Affymetrix [~ 2500000] (imputed)	N
1471	chr7	116200091	116200092	rs9920	24952745	Arking DE	2014-06-22	Nat Genet	Genetic association study of QT interval highlights role for calcium signaling pathways in myocardial repolarization.	QT interval	Up to 70,389 European ancestry individuals, up to 672 Orcadian individuals	Up to 33,316 European ancestry individuals	7q31.2	CAV1	rs9920-C	0.093	3E-8		0.79	[0.52-1.06] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1471	chr7	116200379	116200380	rs1049334	28416822	Low SK	2017-04-17	Nat Genet	Identification of six new genetic loci associated with atrial fibrillation in the Japanese population.	Atrial fibrillation	8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls	3,120 Japanese ancestry cases, 125,064 Japanese ancestry controls, 15,993 European ancestry cases, 113,719 European ancestry controls	7q31.2	CAV1	rs1049334-G	0.71	2E-14	(Japanese)	1.203	[1.148-1.261]	Illumina [5018049] (imputed)	N
1471	chr7	116205913	116205914	rs7802124	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	PR interval	3,360 African American individuals, 13,702 Hispanic/Latino individuals, 129 Asian ancestry individuals, 231 Native American ancestry individuals	NA	7q31.2	NR	rs7802124-?	NR	2E-10		1.947746	[1.35-2.55] unit increase	Illumina [26703325] (imputed)	N
1471	chr7	116205913	116205914	rs7802124	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	7q31.2	NR	rs7802124-?	NR	2E-6				Affymetrix [5486770] (imputed)	N
1471	chr7	116224637	116224638	rs7800573	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7q31.2		rs7800573-?	NR	7E-10				NR [~ 8900000] (imputed)	N
1472	chr7	116267937	116267938	rs987666	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	7q31.2	LINC01510	rs987666-A	0.1188	2E-10		0.0185	[0.013-0.024] unit increase	Affymetrix [18391927] (imputed)	N
1472	chr7	116272699	116272700	rs80235124	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	CAG-83 sp002392625 abundance in stool	5,959 Finnish ancestry individuals	NA	7q31.2		rs80235124-C	0.0625766	3E-8		0.101845	[0.066-0.138] unit increase	Illumina [7980478] (imputed)	N
1472	chr7	116300893	116300894	rs62469047	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7q31.2	NR	rs62469047-A	0.01742	2E-8	(RTCB)	0.06191	NR unit increase	Illumina [1671387] (imputed)	N
1472	chr7	116312438	116312439	rs1858830	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	7q31.2		rs1858830-G	NR	4E-9		0.008	[0.0055-0.0105] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1472	chr7	116312438	116312439	rs1858830	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	7q31.2	MET	rs1858830-C	0.539375	1E-6	(MET, 2837_3_2)	0.12589684	[0.075-0.176] unit increase	Illumina [> 1000000] (imputed)	N
1472	chr7	116330877	116330878	rs2299433	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Hematocrit	up to 40,258 European ancestry individuals, up to 16,128 African American individuals, up to 15,252 East Asian ancestry individuals.	16,389 European and African American individuals	7q31.2	MET	rs2299433-T	NR	2E-6		0.075	[0.042-0.108] percentage increase	NR [2500000] (imputed)	N
1472	chr7	116346602	116346603	rs10243024	19010793	Baranzini SE	2008-11-14	Hum Mol Genet	Genome-wide association analysis of susceptibility and clinical phenotype in multiple sclerosis.	Multiple sclerosis (severity)	794 European ancestry cases, 883 European ancestry controls	NA	7q31.2	MET	rs10243024-?	0.23	6E-6			[NR]	Illumina [551642]	N
1472	chr7	116356075	116356076	rs38853	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls	NA	7q31.2	MET	rs38853-G	0.290021	4E-8		0.05038606	[0.032-0.068] unit increase	Affymetrix [7288503] (imputed)	N
1472	chr7	116357367	116357368	rs1476454	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	7q31.2		rs1476454-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1472	chr7	116358043	116358044	rs38855	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Triglyceride levels	28,183 East Asian ancestry individuals, 177,861 European ancestry individuals	10,857 Chinese ancestry individuals	7q31.2	MET	rs38855-A	0.526	5E-9	(Trans-ethnic initial)	0.0187	[0.012-0.025] unit increase (EA Beta values)	Affymetrix, Illumina [up to 1900000] (imputed)	N
1472	chr7	116358043	116358044	rs38855	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Triglycerides	94,595 European ancestry individuals	93,982 European ancestry individuals	7q31.2	MET	rs38855-G	0.47	2E-8		0.019	[NR] mg/dL decrease	NR [NR] (imputed)	N
1472	chr7	116358486	116358487	rs38856	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls, 20,367 East Asian ancestry cases, 158,359 East Asian ancestry controls	NA	7q31.2		rs38856-A	NR	5E-8		0.0499	[0.032-0.068] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1472	chr7	116379093	116379094	rs38859	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q31.2	NR	rs38859-T	0.456869	2E-10				Affymetrix, Illumina [24649327] (imputed)	N
1472	chr7	116379093	116379094	rs38859	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q31.2	NR	rs38859-T	0.451298	7E-11				Affymetrix, Illumina [23114412] (imputed)	N
1472	chr7	116379452	116379452	rs57097899	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		MET	rs57097899-?	NR	2E-8	(female)	0.470534	[NR] unit increase	Affymetrix [NR] (imputed)	N
1472	chr7	116388020	116388021	rs35759345	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	7q31.2	NR	rs35759345-T	0.449913	6E-11		0.012607	[0.0088-0.0164] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
1473	chr7	116399130	116399131	rs10215153	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	7q31.2		rs10215153-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1473	chr7	116409675	116409675	rs755382741	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	7q31.2		rs755382741-?	NR	3E-8		0.00540625	[0.0035-0.0073] unit decrease	NR [NR]	N
1473	chr7	116417847	116417848	rs11770163	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	7q31.2		rs11770163-C	NR	3E-35		0.0265	[0.022-0.031] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
1473	chr7	116417847	116417848	rs11770163	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	7q31.2		rs11770163-C	NR	1E-12		0.0152	[0.011-0.019] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
1473	chr7	116417847	116417848	rs11770163	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	7q31.2		rs11770163-G	0.667	2E-10		0.008	[0.006-0.01] unit decrease	NR [NR] (imputed)	N
1473	chr7	116417847	116417848	rs11770163	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	7q31.2	MET	rs11770163-G	0.668541	4E-10		0.0139228	[0.0096-0.0182] unit increase	NR [16516521] (imputed)	N
1473	chr7	116417847	116417848	rs11770163	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	7q31.2	MET	rs11770163-C	0.33	1E-9		6.09	z-score increase	Affymetrix [4312306] (imputed)	N
1473	chr7	116420557	116420558	rs3807997	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q31.2	NR	rs3807997-A	0.201448	3E-10				Affymetrix, Illumina [24653286] (imputed)	N
1473	chr7	116420557	116420558	rs3807997	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	7q31.2	NR	rs3807997-A	0.191288	1E-10		0.015049	[0.01-0.02] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
1473	chr7	116431426	116431427	rs193686	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	7q31.2	MET	rs193686-T	0.6834	4E-12		0.0178	[0.013-0.023] unit decrease	Affymetrix [19819130] (imputed)	N
1473	chr7	116431426	116431427	rs193686	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	7q31.2	NR	rs193686-T	0.688	7E-9		0.00912461	[0.006-0.0122] unit increase	NR [9732723] (imputed)	N
1473	chr7	116431426	116431427	rs193686	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	7q31.2	MET	rs193686-C	0.6767	3E-8		0.1465	[0.095-0.198] mmHg decrease	Affymetrix [NR] (imputed)	N
1473	chr7	116437605	116437606	rs1621	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Gamma glutamyl transferase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	7q31.2	MET	rs1621-?		1E-9		0.0324	[0.022-0.043] unit increase	Illumina [31500000] (imputed)	N
1473	chr7	116438510	116438511	rs41741	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	7q31.2	NR	rs41741-T	0.673	8E-10		0.00705395	[0.0048-0.0093] unit decrease	NR [9732723] (imputed)	N
1473	chr7	116438510	116438511	rs41741	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Gamma glutamyl transferase levels	118,309 Japanese ancestry individuals	NA	7q31.2	MET	rs41741-?	NR	5E-9		0.03446	[0.023-0.046] unit decrease novel	Illumina [6108953] (imputed)	N
1473	chr7	116444069	116444070	rs42374	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	7q31.2	NR	rs42374-T	0.546785	9E-15		0.00584547	[0.0042-0.0075] unit increase	Affymetrix [16582909] (imputed)	N
1473	chr7	116444069	116444070	rs42374	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	7q31.2	NR	rs42374-T	0.546785	6E-9		0.00519044	[0.0034-0.007] unit increase	Affymetrix [16582965] (imputed)	N
1473	chr7	116445090	116445091	rs187437	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	7q31.2	NR	rs187437-G	0.546999	3E-17		0.00874615	[0.0065-0.011] unit increase	Affymetrix [16582621] (imputed)	N
1473	chr7	116445090	116445091	rs187437	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	7q31.2	NR	rs187437-G	0.546999	1E-13		0.00826966	[0.0058-0.0107] unit increase	Affymetrix [16582614] (imputed)	N
1473	chr7	116446572	116446573	rs41748	29769521	Ramirez J	2018-05-16	Nat Commun	Thirty loci identified for heart rate response to exercise and recovery implicate autonomic nervous system.	Resting heart rate	67,062 European ancestry individuals	NA	7q31.2	MET	rs41748-T	0.549511	7E-6		0.290341	[0.16-0.42] unit increase	Affymetrix [~ 7800000] (imputed)	N
1473	chr7	116446572	116446573	rs41748	27798624	Eppinga RN	2016-10-31	Nat Genet	Identification of genomic loci associated with resting heart rate and shared genetic predictors with all-cause mortality.	Resting heart rate	127,919 European ancestry individuals, 2,478 Asian ancestry individuals, 1,734 Black individuals, 684 Mixed ancestry individuals, 1,436 individuals	130,795 European ancestry individuals	7q31.2	MET	rs41748-G	0.45	7E-9		0.1926	[0.13-0.26] unit decrease	Affymetrix [19941912] (imputed)	N
1473	chr7	116477305	116477306	rs186811983	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	7q31.2	NR	rs186811983-?	NR	3E-6		1.51814	[0.89-2.15] unit increase	NR [13958389] (imputed)	N
1473	chr7	116486019	116486020	rs41785	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	7q31.2	NR	rs41785-C	0.582682	9E-9		0.0111724	[0.0074-0.015] unit increase	Affymetrix [15000001]	N
1473	chr7	116486019	116486020	rs41785	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	7q31.2	CAPZA2	rs41785-C	0.582516	2E-13		0.0148568	[0.011-0.019] unit increase	Affymetrix [NR] (imputed)	N
1473	chr7	116486019	116486020	rs41785	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	7q31.2	CAPZA2	rs41785-?	NR	8E-12		0.0182	[0.013-0.023] unit decrease	Affymetrix [5701386] (imputed)	N
1473	chr7	116490465	116490466	rs11321799	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	7q31.2	CAPZA2	rs11321799-C	0.3832	5E-11		0.02487055	[0.017-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
1473	chr7	116500029	116500030	rs58664128	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		CAPZA2	rs58664128-?	NR	2E-11	(female)	0.617303	[NR] unit increase	Affymetrix [NR] (imputed)	N
1473	chr7	116503488	116503489	rs3807999	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	7q31.2		rs3807999-G	0.765	2E-13				Affymetrix [10369434] (imputed)	N
1473	chr7	116514939	116514940	rs12706109	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	7q31.2		rs12706109-T	NR	3E-9		0.0115	[0.0078-0.0152] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
1473	chr7	116515768	116515768	rs34224608	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	7q31.2		rs34224608-AT	NR	2E-28		0.0304	[0.025-0.036] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1473	chr7	116515780	116515781	rs13224082	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	7q31.2	CAPZA2, AC002543.2	rs13224082-T	0.241682	3E-15		0.020856895	[0.016-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1473	chr7	116515780	116515781	rs13224082	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	7q31.2	CAPZA2, AC002543.2	rs13224082-T	0.241717	4E-46		0.037635926	[0.032-0.043] unit increase	Affymetrix [93095623] (imputed)	N
1473	chr7	116515780	116515781	rs13224082	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	7q31.2	CAPZA2, AC002543.2	rs13224082-T	0.241707	2E-34		0.032340616	[0.027-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
1473	chr7	116515780	116515781	rs13224082	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	7q31.2	CAPZA2, AC002543.2	rs13224082-T	0.2429	9E-23		0.04121992	[0.033-0.049] unit increase	Affymetrix [~ 2500000] (imputed)	N
1473	chr7	116521643	116521644	rs11562010	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	7q31.2	CAPZA2	rs11562010-A	0.4374	9E-13		0.02644003	[0.019-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
1474	chr7	116524122	116524123	rs73473209	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7q31.2	NR	rs73473209-G	0.02962	3E-8	(EIF2B1)	0.01609	NR unit increase	Illumina [1671387] (imputed)	N
1474	chr7	116524511	116524512	rs9791721	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	7q31.2	CAPZA2	rs9791721-C	0.239714	1E-27		0.028558172	[0.023-0.034] unit increase	Affymetrix [93095623] (imputed)	N
1474	chr7	116530862	116530863	rs12669383	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q31.2	NR	rs12669383-G	0.260501	3E-12				Affymetrix, Illumina [24332387] (imputed)	N
1474	chr7	116536566	116536567	rs12674017	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q31.2	NR	rs12674017-G	0.75575	1E-39				Affymetrix, Illumina [17210439] (imputed)	N
1474	chr7	116544984	116544985	rs13228847	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	7q31.2	CAPZA2	rs13228847-T	0.2338	7E-13		0.03073265	[0.022-0.039] unit increase	Affymetrix [~ 2500000] (imputed)	N
1474	chr7	116564259	116564260	rs12665952	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q31.2	NR	rs12665952-G	0.263469	1E-56				Affymetrix, Illumina [24588908] (imputed)	N
1474	chr7	116564259	116564260	rs12665952	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	7q31.2	NR	rs12665952-G	0.238343	1E-55		0.033821	[0.03-0.038] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1474	chr7	116567731	116567732	rs12706122	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	7q31.2		rs12706122-A	0.242798	5E-9		0.015059136	[0.01-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1474	chr7	116567731	116567732	rs12706122	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	7q31.2	NR	rs12706122-A	0.242271	5E-12		0.014889	[0.011-0.019] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
1474	chr7	116567731	116567732	rs12706122	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	7q31.2	NR	rs12706122-G	0.757554	4E-42		0.030368	[0.026-0.035] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
1474	chr7	116567731	116567732	rs12706122	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	7q31.2		rs12706122-?	NR	4E-10				NR [~ 8900000] (imputed)	N
1474	chr7	116571846	116571847	rs1966323	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	7q31.2	CAPZA2, ST7-AS1	rs1966323-T		2E-9		0.166	unit increase	Affymetrix [at least 2696785] (imputed)	N
1474	chr7	116575152	116575153	rs77201604	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7q31.2	NR	rs77201604-G	0.01045	2E-9	(UCHL3)	0.01856	NR unit decrease	Illumina [1671387] (imputed)	N
1474	chr7	116575152	116575153	rs77201604	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7q31.2	NR	rs77201604-G	0.01045	1E-9	(APRT)	0.2554	NR unit decrease	Illumina [1671387] (imputed)	N
1474	chr7	116575152	116575153	rs77201604	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7q31.2	NR	rs77201604-G	0.01045	1E-8	(ATIC)	0.2238	NR unit decrease	Illumina [1671387] (imputed)	N
1474	chr7	116577123	116577124	rs7782376	20125193	Cirulli ET	2010-02-03	Eur J Hum Genet	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American individuals, up to 74 South Asian ancestry individuals	NA	7q31.2	AC106873.3	rs7782376-?	NR	8E-6	(Digit Span Forward)			Illumina [up to 563855]	N
1474	chr7	116585672	116585673	rs7457973	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	7q31.2	MET	rs7457973-C	0.8878125	3E-6	(MET, 11814_29_3)	0.1825757	[0.11-0.26] unit increase	Illumina [> 1000000] (imputed)	N
1474	chr7	116649317	116649318	rs548030386	30591961	Huang L	2018-12-24	Sci China Life Sci	Genome-wide analysis identified 17 new loci influencing intraocular pressure in Chinese population.	Intraocular pressure	5,571 Chinese ancestry individuals	2,981 Chinese ancestry individuals	7q31.2	ST7	rs548030386-G	0.1	1E-7		5.33	NR z score increase	Illumina [at least 900015] (imputed)	N
1475	chr7	116690026	116690027	rs144581120	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	7q31.2		rs144581120-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1475	chr7	116712400	116712401	rs141636670	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MET	5,363 Icelandic ancestry individuals	NA	7q31.2		rs141636670-G	0.02458	1E-31		0.696107	[0.58-0.81] unit decrease	Illumina [7506463] (imputed)	N
1475	chr7	116762972	116762973	rs138462488	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	7q31.2	NR	rs138462488-?	NR	5E-7		0.84883	[0.52-1.18] unit increase	NR [13958389] (imputed)	N
1476	chr7	116815596	116815597	rs74335618	29460428	Gelernter J	2018-02-20	Alcohol Clin Exp Res	Genomewide association study of alcohol dependence and related traits in a Thai population.	Response to alcohol consumption (flushing response)	537 Thai ancestry individuals with flushing response, 508 Thai ancestry individuals without flushing response	NA	7q31.2	ST7	rs74335618-C	0.114	3E-6		0.7019	[0.41-1] unit decrease	Illumina [at least 4683137] (imputed)	N
1476	chr7	116818292	116818293	rs38864	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	7q31.2	Intergenic	rs38864-?	NR	4E-6		2.105	[NR]	Affymetrix [492217] (imputed)	N
1476	chr7	116854279	116854280	rs540149525	34620984	Skuladottir AT	2021-10-07	Commun Biol	A genome-wide meta-analysis uncovers six sequence variants conferring risk of vertigo.	Vertigo	48,072 European ancestry cases, 894,541 European ancestry controls	NA	7q31.2		rs540149525-T	NR	6E-6		1.55193		Affymetrix, Illumina [62056310] (imputed)	N
1476	chr7	116883590	116883591	rs718737	32121467	Adewuyi EO	2020-02-29	Genes (Basel)	Shared Molecular Genetic Mechanisms Underlie Endometriosis and Migraine Comorbidity.	Endometriosis or migraine	17,054 European and Japanese ancestry endometriosis cases, 29,208 European ancestry migraine cases, 191,858 European and Japanese ancestry controls, 172,931 European ancestry controls	NA	7q31.2	NR	rs718737-G	NR	5E-6	(random effect)	1.0526316	NR	NR [6904914] (imputed)	N
1476	chr7	116889717	116889718	rs38902	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex x age interaction (4df test)	up to 43,776 European ancestry men aged <50, up to 50,526 European ancestry women aged <50, up to 69,944 European ancestry men aged >50, up to 88,129 European ancestry women aged >50	NA	7q31.2	MET, CAPZA2, ST7-AS1, ST7, ST7-OT4, ST7-AS2, ST7-OT3, ASZ1, CFTR, CTTNBP2	rs38902-A	0.515765264231727	3E-7				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1476	chr7	116889717	116889718	rs38902	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	7q31.2	MET, CAPZA2, ST7-AS1, ST7, ST7-OT4, ST7-AS2, ST7-OT3, ASZ1, CFTR, CTTNBP2	rs38902-A	0.515765264231727	5E-9		0.021886844	units increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1476	chr7	116892845	116892846	rs38904	28886342	Ng M	2017-09-07	Am J Hum Genet	A Genome-wide Association Study of Dupuytren Disease Reveals 17 Additional Variants Implicated in Fibrosis.	Dupuytren's disease	3,871 European ancestry cases, 4,686 European ancestry controls	4,041 European and unknown ancestry cases, 8,251 European and unknown ancestry controls	7q31.2	WNT2	rs38904-C	0.464	4E-23		1.253	[1.199-1.311]	Illumina [238825]	N
1476	chr7	116892845	116892846	rs38904	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Ulcerative colitis	12,366 European and unknown ancestry cases, 33,609 European and unknown ancestry controls	NA	7q31.2	WNT2	rs38904-?		6E-6				Illumina [9578670] (imputed)	N
1476	chr7	116892845	116892846	rs38904	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	7q31.2	WNT2	rs38904-?		4E-6				Illumina [9725440] (imputed)	N
1476	chr7	116892845	116892846	rs38904	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	7q31.2	intergenic	rs38904-T	0.532	1E-8		1.054	[1.025-1.085]	Affymetrix, Illumina [1230000] (imputed)	N
1476	chr7	116894864	116894865	rs38906	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	7q31.2	NR	rs38906-?	NR	6E-10				Affymetrix [~ 8270000] (imputed)	N
1476	chr7	116895162	116895163	rs38911	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	7q31.2	NR	rs38911-G	0.54	6E-6	(EA)	1.0574577		Affymetrix, Illumina [~ 9000000] (imputed)	N
1476	chr7	116895254	116895254	rs5886848	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	7q31.2	AC006326.3	rs5886848-TC	NR	4E-9		0.0166854	[0.011-0.022] unit increase	Affymetrix [319769] (imputed)	N
1476	chr7	116895254	116895254	rs5886848	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	7q31.2	AC006326.3	rs5886848-TC	NR	2E-9		0.016936	[0.011-0.022] unit increase	Affymetrix [319769] (imputed)	N
1476	chr7	116910289	116910290	rs34223626	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	7q31.2	NR	rs34223626-?	NR	5E-9				Affymetrix [~ 8270000] (imputed)	N
1476	chr7	116913566	116913567	rs2270206	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Uterine fibroids	21,024 European ancestry cases, 237,694 European ancestry controls, 14,475 East Asian ancestry cases, 65,733 East Asian ancestry controls	NA	7q31.2		rs2270206-A	NR	3E-8		0.0577	[0.037-0.078] unit increase	Affymetrix, Illumina [25795146] (imputed)	N
1476	chr7	116913566	116913567	rs2270206	31649266	Gallagher CS	2019-10-24	Nat Commun	Genome-wide association and epidemiological analyses reveal common genetic origins between uterine leiomyomata and endometriosis.	Uterine fibroids	20,406 European ancestry cases, 223,918 European ancestry controls	15,068 European ancestry cases, 43,587 European ancestry controls	7q31.2	WNT2	rs2270206-A	0.16	5E-8		1.06	[1.04-1.09]	Affymetrix, Illumina [8662096] (imputed)	N
1477	chr7	116917117	116917118	rs4730775	21732829	Dolmans GH	2011-07-06	N Engl J Med	Wnt signaling and Dupuytren's disease.	Dupuytren's disease	856 European ancestry cases, 2,836 European ancestry controls	1,298 European ancestry cases, 7,136 European ancestry controls	7q31.2	WNT2	rs4730775-?	0.59	3E-8		1.2	[1.14-1.30]	Illumina [234939]	N
1477	chr7	116917244	116917244	rs200608253	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	7q31.2	WNT2	rs200608253-?	0.52	4E-8		1.05	[1.04-1.05]	Illumina [at least 560000] (imputed)	N
1477	chr7	116917244	116917244	rs200608253	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	7q31.2	WNT2	rs200608253-?	NR	4E-8		1.046	[1.029-1.063]	Illumina [13757430] (imputed)	N
1477	chr7	116917426	116917427	rs2024233	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Uterine fibroids	14,475 East Asian ancestry cases, 65,733 East Asian ancestry controls	NA	7q31.2		rs2024233-A	0.558879788	2E-9		0.082386665	[0.055-0.109] unit increase	Illumina [13401454] (imputed)	N
1477	chr7	116939286	116939287	rs114167782	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	7q31.2	NR	rs114167782-?	NR	2E-7	(Native Hawaiian)	1.2727	[NR] unit increase	Illumina [up to 11892802] (imputed)	N
1477	chr7	116951670	116951671	rs39308	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	7q31.2	WNT2, AC002465.2	rs39308-A	NR	2E-8		0.0181262	[0.012-0.024] unit increase	Affymetrix [319769] (imputed)	N
1477	chr7	116951670	116951671	rs39308	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	7q31.2	WNT2, AC002465.2	rs39308-A	NR	2E-8		0.0181966	[0.012-0.025] unit increase	Affymetrix [319769] (imputed)	N
1477	chr7	116954784	116954785	rs39312	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	7q31.2	NR	rs39312-?	NR	2E-15				Affymetrix [~ 8270000] (imputed)	N
1477	chr7	116954784	116954785	rs39312	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	7q31.2	NR	rs39312-C	0.38	7E-18		0.016	[0.012-0.02] unit increase	Affymetrix [2446094] (imputed)	N
1477	chr7	116954784	116954785	rs39312	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	7q31.2	NR	rs39312-C	0.38	5E-8				Affymetrix [2446094] (imputed)	N
1477	chr7	116954784	116954785	rs39312	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	7q31.2	NR	rs39312-A	0.6211	2E-16		0.0148	[0.011-0.018] unit decrease	NR [~ 27400000] (imputed)	N
1477	chr7	116954784	116954785	rs39312	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	7q31.2	NA	rs39312-A	0.6205	3E-18		0.0154	[0.012-0.019] unit decrease	NR [~ 27400000] (imputed)	N
1477	chr7	116954784	116954785	rs39312	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	7q31.2	NR	rs39312-A	0.6205	3E-18		0.0154	[0.012-0.019] unit decrease	NR [~ 27400000] (imputed)	N
1477	chr7	116976829	116976830	rs6977665	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	7q31.2		rs6977665-G	NR	1E-12		0.0145	[0.011-0.018] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
1477	chr7	117012022	117012023	rs10225824	32918910	Dong J	2020-09-09	Gastroenterology	Sex-Specific Genetic Associations for Barrett's Esophagus and Esophageal Adenocarcinoma.	Barrett's esophagus or esophageal adenocarcinoma x sex interaction (2df test)	6,758 European ancestry male cases, 1,670 European ancestry female cases, 7,489 European ancestry male controls, 6,174 European ancestry female controls	NA	7q31.2	ASZ1	rs10225824-A	NR	4E-8				Illumina [up to 9353006] (imputed)	N
1477	chr7	117012022	117012023	rs10225824	32918910	Dong J	2020-09-09	Gastroenterology	Sex-Specific Genetic Associations for Barrett's Esophagus and Esophageal Adenocarcinoma.	Barrett's esophagus  or Esophageal adenocarcinoma	6,758 European ancestry male cases, 1,670 European ancestry female cases, 7,489 European ancestry male controls, 6,174 European ancestry female controls	NA	7q31.2	ASZ1	rs10225824-A	NR	6E-8		0.84	[0.79-0.90]	Illumina [up to 9353006] (imputed)	N
1477	chr7	117023534	117023535	rs4730779	23966867	Liu CT	2013-08-15	PLoS Genet	Genome-wide association of body fat distribution in African ancestry populations suggests new loci.	Waist circumference	Up to 23,564 African American individuals	Up to 10,027 African American individuals	7q31.2	ASZ1	rs4730779-A	0.86	4E-6	(BMI_men)	0.1	[0.061-0.139] unit increase	Affymetrix, Illumina [3200000] (imputed)	N
1477	chr7	117040116	117040117	rs2188554	27527254	Gharahkhani P	2016-08-12	Lancet Oncol	Genome-wide association studies in oesophageal adenocarcinoma and Barrett's oesophagus: a large-scale meta-analysis.	Esophageal adenocarcinoma	4,112 European ancestry cases, 17,159 European ancestry controls	NA	7q31.2	ASZ1	rs2188554-A		6E-9		1.2322	[1.16-1.3]	Illumina [13074274] (imputed)	N
1477	chr7	117041068	117041069	rs7805063	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	7q31.2		rs7805063-?	NR	2E-15				NR [~ 8900000] (imputed)	N
1478	chr7	117057232	117057233	rs2188555	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	7q31.2	ASZ1	rs2188555-A	NR	1E-10		0.0188001	[0.013-0.025] unit increase	Affymetrix [319769] (imputed)	N
1478	chr7	117057232	117057233	rs2188555	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	7q31.2	ASZ1	rs2188555-A	NR	8E-11		0.0189579	[0.013-0.025] unit increase	Affymetrix [319769] (imputed)	N
1478	chr7	117064624	117064625	rs10249651	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	7q31.2	ASZ1	rs10249651-T	0.6232	4E-8		0.0311	[0.02-0.042] unit decrease	NR [8041861] (imputed)	N
1478	chr7	117067821	117067822	rs7808424	21378990	Schunkert H	2011-03-06	Nat Genet	Large-scale association analysis identifies 13 new susceptibility loci for coronary artery disease.	Coronary heart disease	22,233 European ancestry cases, 64,762 European ancestry controls	56,682 European ancestry cases and controls	7q31.2	intergenic	rs7808424-G	0.12	1E-6		1.1	[1.06-1.14]	Affymetrix, Illumina [~ 2300000] (imputed)	N
1478	chr7	117086612	117086613	rs7795896	34012112	Chiou J	2021-05-19	Nature	Interpreting type 1 diabetes risk with genetics and single-cell epigenomics.	Type 1 diabetes	18,942 European ancestry cases, 501,638 European ancestry controls	NA	7q31.2	CFTR	rs7795896-T	0.691577	2E-16		0.13543522	[0.1-0.17] unit decrease	Affymetrix, Illumina [62116689] (imputed)	N
1478	chr7	117143601	117143602	rs4148689	22179738	Lai HM	2011-12-16	Rheumatology (Oxford)	Gout and type 2 diabetes have a mutual inter-dependent effect on genetic risk factors and higher incidences.	Gout	20 Han Chinese ancestry male gout cases, 42 Han Chinese ancestry male controls	NA	7q31.2	CFTR	rs4148689-?		1E-7				Illumina [479403]	N
1479	chr7	117227791	117227792	rs76713772	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	7q31.2	NR	rs76713772-?	NR	5E-6		10514.731	NR unit decrease	Illumina [2379855]	N
1479	chr7	117252288	117252292	rs530142532	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	7q31.2		rs530142532-T	NR	9E-9		0.0386	[0.025-0.052] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
1479	chr7	117256711	117256712	rs17451754	27527254	Gharahkhani P	2016-08-12	Lancet Oncol	Genome-wide association studies in oesophageal adenocarcinoma and Barrett's oesophagus: a large-scale meta-analysis.	Barrett's esophagus  or Esophageal adenocarcinoma	6,167 European ancestry Barrett's oesophagus cases, 4,112 European ancestry esophageal adenocarcinoma cases, 17,159 European ancestry controls	NA	7q31.2	CFTR	rs17451754-G		5E-10		1.19	[1.12-1.25]	Illumina [11951684] (imputed)	N
1480	chr7	117332913	117332914	rs975722	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	7q31.2	intergenic	rs975722-A	0.595	4E-8		0.0283	[0.018-0.038] unit decrease	Affymetrix [at least 7947838] (imputed)	N
1480	chr7	117375373	117375374	rs62617115	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	7q31.31		rs62617115-?	NR	5E-13				NR [~ 8900000] (imputed)	N
1480	chr7	117377644	117377645	rs757278	24709693	Cobb J	2014-04-08	Pharmacogenomics J	Genome-wide data reveal novel genes for methotrexate response in a large cohort of juvenile idiopathic arthritis cases.	Response to methotrexate in juvenile idiopathic arthritis	694 European ancestry child cases	NA	7q31.31	LSM8, CFTR, CTTNBP2	rs757278-T	NR	5E-7	(ParVAS)	1.32	[0.81-1.83] unit increase	Illumina [586062]	N
1481	chr7	117459042	117459043	rs7800668	24709693	Cobb J	2014-04-08	Pharmacogenomics J	Genome-wide data reveal novel genes for methotrexate response in a large cohort of juvenile idiopathic arthritis cases.	Response to methotrexate in juvenile idiopathic arthritis	694 European ancestry child cases	NA	7q31.31	LSM8, CFTR, CTTNBP2	rs7800668-C	NR	6E-6	(ACR-pedi)	1.34	[0.75-1.93] unit decrease	Illumina [586062]	N
1481	chr7	117495666	117495667	rs6976111	34054130	Bralten J	2021-05-30	Neuropsychopharmacology	Genetic underpinnings of sociability in the general population.	Worry too long after an embarrassing experience	342,461 European ancestry individuals	NA	7q31.31	CTTNBP2	rs6976111-?	NR	3E-6				Affymetrix [up to 9327396] (imputed)	N
1481	chr7	117495666	117495667	rs6976111	34054130	Bralten J	2021-05-30	Neuropsychopharmacology	Genetic underpinnings of sociability in the general population.	Sociability score	342,461 European ancestry individuals	NA	7q31.31	CTTNBP2	rs6976111-A	NR	4E-10		0.01451	unit decrease	Affymetrix [9327396] (imputed)	N
1481	chr7	117495666	117495667	rs6976111	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	7q31.31	NR	rs6976111-C	0.6933	8E-10		0.0318	[0.022-0.042] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
1481	chr7	117495666	117495667	rs6976111	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	7q31.31	NR	rs6976111-C	0.7218	2E-8		0.0258	[0.017-0.035] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1481	chr7	117495666	117495667	rs6976111	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Neuroticism	274,107 British ancestry individuals	NA	7q31.31	NR	rs6976111-A	0.2993	1E-8		0.01101	[0.0072-0.0148] unit increase	NR [8968716] (imputed)	N
1481	chr7	117495666	117495667	rs6976111	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	7q31.31	CTTNBP2	rs6976111-C	NR	4E-9		0.010217	[0.0068-0.0136] unit increase	Affymetrix [18485882] (imputed)	N
1481	chr7	117495666	117495667	rs6976111	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	7q31.31	CTTNBP2	rs6976111-A	0.3127	1E-8		1.04	[1.03-1.06]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1481	chr7	117496318	117496319	rs7776980	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on highest math class (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	7q31.31		rs7776980-?	NR	1E-10				NR [NR]	N
1481	chr7	117496318	117496319	rs7776980	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on Townsend deprivation index (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	7q31.31		rs7776980-?	NR	2E-10				NR [NR]	N
1481	chr7	117496889	117496890	rs10252771	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	7q31.31	NR	rs10252771-G	0.319700400800672	3E-12		0.008682718	[0.0062-0.0111] unit increase	NR [NR]	N
1481	chr7	117496889	117496890	rs10252771	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	7q31.31	NR	rs10252771-G	0.319700400800672	3E-12		0.009252252	[0.0067-0.0118] unit increase	NR [NR]	N
1481	chr7	117502573	117502574	rs7807677	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	7q31.31		rs7807677-C	0.45	7E-19		8.87	z score increase	Affymetrix [9061022] (imputed)	N
1481	chr7	117502573	117502574	rs7807677	30718901	Howard DM	2019-02-04	Nat Neurosci	Genome-wide meta-analysis of depression identifies 102 independent variants and highlights the importance of the prefrontal brain regions.	Depression	118,811 European ancestry cases, 327,427 European ancestry controls, 127,552 cases, 233,763 controls	414,055 European ancestry cases, 892,299 European ancestry controls	7q31.31	NR	rs7807677-T	0.5505	5E-22		1.021	[1.017-1.026]	NR [8098588] (imputed)	N
1481	chr7	117506350	117506351	rs34564710	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on educational attainment (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	7q31.31		rs34564710-?	NR	1E-9				NR [NR]	N
1481	chr7	117508505	117508506	rs7794364	28000841	Baek SH	2016-12-14	Mol Med Rep	Genome-wide association scans for idiopathic osteonecrosis of the femoral head in a Korean population.	Idiopathic osteonecrosis of the femoral head	217 Korean ancestry cases, 217 Korean ancestry controls	NA	7q31.31	CTTNBP2	rs7794364-?	NR	7E-6				Affymetrix [509886]	N
1481	chr7	117510620	117510621	rs13239186	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	7q31.31	NR	rs13239186-C	0.286282	4E-9		0.045749154	[0.03-0.061] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1481	chr7	117510620	117510621	rs13239186	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	7q31.31		rs13239186-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1481	chr7	117510620	117510621	rs13239186	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	7q31.31	CTTNBP2	rs13239186-T	0.302028595537338	3E-10		0.0539	[0.037-0.071] unit increase	NR [5035015] (imputed)	N
1481	chr7	117512652	117512653	rs7795873	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	7q31.31		rs7795873-C	0.359	5E-16		0.01	[0.008-0.012] unit decrease	NR [NR] (imputed)	N
1481	chr7	117512652	117512653	rs7795873	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking cessation (MTAG)	up to 820,192 European ancestry individuals	NA	7q31.31	NR	rs7795873-T	0.665	3E-14		0.0123622	[0.0092-0.0155] unit increase	NR [9732723] (imputed)	N
1481	chr7	117513663	117513664	rs7809993	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	7q31.31		rs7809993-?	NR	9E-13		0.0193	unit decrease	NR [NR]	N
1481	chr7	117513836	117513837	rs10263711	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on cognitive performance (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	7q31.31		rs10263711-?	NR	4E-11				NR [NR]	N
1481	chr7	117514839	117514840	rs6965740	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	7q31.31	CTTNBP2	rs6965740-T	0.4535	5E-12		0.013907693	[0.01-0.0179] unit decrease	Affymetrix [11514654] (imputed)	N
1481	chr7	117514839	117514840	rs6965740	30617275	Erzurumluoglu AM	2019-01-07	Mol Psychiatry	Meta-analysis of up to 622,409 individuals identifies 40 novel smoking behaviour associated genetic loci.	Smoking initiation	324,851 European ancestry individuals, 21,962 South Asian ancestry individuals	up to 275,596 European ancestry individuals	7q31.31	CTTNBP2	rs6965740-T	0.31	1E-8		0.0126	[0.0067-0.0185] unit decrease (replication)	Affymetrix, Illumina [up to 1207583] (imputed)	N
1481	chr7	117517774	117517775	rs34031516	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on self-rated math ability (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	7q31.31		rs34031516-?	NR	8E-11				NR [NR]	N
1481	chr7	117520008	117520009	rs2193255	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	7q31.31		rs2193255-A	0.4461	1E-11	(conditional-joint)	0.0096	[0.0069-0.0123] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1481	chr7	117520008	117520009	rs2193255	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	7q31.31	Intergenic	rs2193255-A	0.4461	1E-11	(MTAG)	0.009	[0.0065-0.0115] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1481	chr7	117522057	117522058	rs10267771	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on average household income before tax (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	7q31.31		rs10267771-?	NR	3E-8				NR [NR]	N
1481	chr7	117522955	117522956	rs10242758	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	7q31.31	TBC1D5	rs10242758-?		1E-10				NR [7428630] (imputed)	N
1481	chr7	117523708	117523709	rs10233018	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking initiation	842,717 European ancestry individuals	NA	7q31.31	CTTNBP2, LSM8	rs10233018-A		5E-16		0.972	[NR]	Affymetrix [up to 79000000] (imputed)	N
1481	chr7	117523708	117523709	rs10233018	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking initiation (ever regular vs never regular)	up to 433,216 European ancestry individuals	NA	7q31.31	CTTNBP2	rs10233018-G	0.504	6E-11		0.015	[0.011-0.019] unit increase	Illumina [~ 250000] (imputed)	N
1481	chr7	117523708	117523709	rs10233018	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	7q31.31	NR	rs10233018-G	0.516	8E-30		0.0122421	[0.01-0.014] unit increase	NR [9732723] (imputed)	N
1481	chr7	117523708	117523709	rs10233018	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	7q31.31	NR	rs10233018-G	0.516	5E-22		0.024612404	[0.02-0.03] unit increase	NR [~ 10000000] (imputed)	N
1481	chr7	117523708	117523709	rs10233018	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	7q31.31	NR	rs10233018-G	0.522	8E-14		0.010904	[0.008-0.0138] unit decrease	NR [9732723] (imputed)	N
1481	chr7	117523708	117523709	rs10233018	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	7q31.31		rs10233018-?	NR	7E-15				NR [~ 8900000] (imputed)	N
1481	chr7	117523708	117523709	rs10233018	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms	354,862 European ancestry individuals	NA	7q31.31	NR	rs10233018-A	0.4886	6E-9		0.0138	[0.0091-0.0185] unit decrease	Illumina [NR] (imputed)	N
1481	chr7	117523708	117523709	rs10233018	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Depression	105,739 European ancestry individuals, 16,471 European ancestry major depressive disorder cases, 58,835 European ancestry controls	368,890 European ancestry individuals	7q31.31	NR	rs10233018-A	NR	9E-8		5.3463354	[NR] z score decrease	Affymetrix [up to 6544862] (imputed)	N
1481	chr7	117529640	117529641	rs10244364	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Smoking status (ever vs never smokers)	336,066 British ancestry individuals	NA	7q31.31	NR	rs10244364-C	0.3201	1E-12		1.039	[1.03-1.05]	NR [8968716] (imputed)	N
1481	chr7	117529640	117529641	rs10244364	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	7q31.31	NR	rs10244364-C	0.320144451922097	7E-13		0.007066459	[0.0051-0.009] unit increase	NR [NR]	N
1481	chr7	117529640	117529641	rs10244364	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	7q31.31	NR	rs10244364-C	0.320144451922097	5E-13		0.011374497	[0.0083-0.0145] unit increase	NR [NR]	N
1481	chr7	117529640	117529641	rs10244364	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	7q31.31	NR	rs10244364-C	0.320144451922097	5E-13		0.0072558564	[0.0053-0.0092] unit increase	NR [NR]	N
1481	chr7	117529640	117529641	rs10244364	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Neuroticism (MTAG)	168,105 European ancestry individuals	NA	7q31.31	NR	rs10244364-C	0.3144	7E-10		0.0186	[0.013-0.024] unit increase	Illumina [NR] (imputed)	N
1481	chr7	117529640	117529641	rs10244364	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms (MTAG)	354,862 European ancestry individuals	NA	7q31.31	NR	rs10244364-C	0.3217	7E-9		0.0132	[0.0087-0.0177] unit increase	Illumina [NR] (imputed)	N
1481	chr7	117529640	117529641	rs10244364	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	7q31.31	intergenic	rs10244364-T	0.6821900000000001	6E-10		6.179	z score decrease	Illumina [18485882] (imputed)	N
1481	chr7	117529640	117529641	rs10244364	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Neuroticism	170,911 European ancestry individuals	NA	7q31.31	NR	rs10244364-T	0.664	4E-7		0.01865112	[0.011-0.026] unit decrease	Affymetrix [up to 6544775] (imputed)	N
1481	chr7	117543062	117543063	rs7807019	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	7q31.31		rs7807019-A	0.54	7E-14		0.015	[0.011-0.019] unit decrease	Affymetrix [up to 90000000] (imputed)	N
1481	chr7	117544179	117544180	rs17488728	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	7q31.31	AC007568.1	rs17488728-T	0.4547	2E-8		0.011356413	[0.0074-0.0153] unit decrease	Affymetrix [up to 18485882] (imputed)	N
1481	chr7	117567575	117567576	rs1548461	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking status (current vs never)	40,456 European ancestry current smokers, 13,511 African American current smokers, 2,920 Hispanic current smokers, 59,056 European ancestry mostly never smokers, 17,751 African American mostly never smokers, 7,195 Hispanic mostly never smokers	NA	7q31.31	CTTNBP2, LSM8	rs1548461-C		7E-9		1.051	[NR]	Affymetrix [~ 79000000] (imputed)	N
1482	chr7	117579328	117579329	rs1024432	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Bipolar disorder vs major depressive disorder (ordinary least squares (OLS))	20,352 bipolar disorder cases, 170,756 major depressive disorder cases	NA	7q31.31		rs1024432-?	NR	7E-9		0.0159	NR unit decrease	NR [6265453] (imputed)	N
1482	chr7	117585778	117585779	rs7782815	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	7q31.31	CTTNBP2	rs7782815-G	0.306089	2E-6		1.04	[1.02-1.06]	NR [8126035] (imputed)	N
1482	chr7	117593307	117593308	rs6969783	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	7q31.31		rs6969783-A	0.4705	3E-12		0.0098	[0.0071-0.0125] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1482	chr7	117595828	117595829	rs1029422	29678681	Matana A	2018-04-18	Genomics	Genome-wide meta-analysis identifies novel gender specific loci associated with thyroid antibodies level in Croatians.	Plasma anti-thyroid peroxidase levels	1,593 Croatian ancestry women, 1,025 Croatian ancestry men	NA	7q31.31	LSM8	rs1029422-G	NR	4E-6		0.16	[0.091-0.229] unit increase	Illumina [5527232] (imputed)	N
1482	chr7	117599513	117599514	rs916784	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (min-P)	26,502 European ancestry individuals	NA	7q31.31	SLC45A3, NUCKS1, AC119673.1, RAB7L1, SLC41A1, PM20D1	rs916784-?		8E-12				NR [7428630] (imputed)	N
1482	chr7	117599513	117599514	rs916784	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (min-P)	26,502 European ancestry individuals	NA	7q31.31	FAM178B, FAHD2B, ANKRD36, COX5B, ACTR1B, ZAP70, TMEM131	rs916784-?		2E-11				NR [7428630] (imputed)	N
1482	chr7	117600423	117600424	rs2402273	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	7q31.31	NR	rs2402273-?		1E-10	(Genu of corpus callosum)			NR [8955960] (imputed)	N
1482	chr7	117600423	117600424	rs2402273	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	7q31.31	NR	rs2402273-C	0.4094	2E-9		0.0072	[0.0048-0.0096] unit increase	NR [7666894] (imputed)	N
1482	chr7	117601661	117601662	rs35966646	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation Hannum age acceleration	6,148 African American individuals	NA	7q31.31	NR	rs35966646-T	0.942	4E-8		0.9716	[0.62-1.32] unit decrease	Affymetrix, Illumina [12989706] (imputed)	N
1482	chr7	117603819	117603820	rs1013278	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Glaucoma	11,018 European ancestry cases, 126,068 European ancestry controls	NA	7q31.31	CTTNBP2, CFTR	rs1013278-C	NR	3E-8		1.09	[1.05-1.14]	Affymetrix [up to 40000000] (imputed)	N
1482	chr7	117605713	117605714	rs1468183	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	7q31.31	NR	rs1468183-A	0.4087	7E-13				NR [9056863] (imputed)	N
1482	chr7	117607213	117607214	rs141639699	30718321	Sanchez-Roige S	2019-02-04	J Neurosci	Genome-wide association studies of impulsive personality traits (BIS-11 and UPPSP) and drug experimentation in up to 22,861 adult research participants identify loci in the CACNA1I and CADM2 genes.	Positive urgency	22,738 European ancestry individuals	NA	7q31.31	CTTNBP2, LSM8	rs141639699-T	0.0471	9E-7		0.108	[0.151-0.065] unit decrease	Illumina [11434023] (imputed)	N
1482	chr7	117610289	117610290	rs28438696	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	7q31.31		rs28438696-C	0.4	3E-10		6.3	z score increase	Affymetrix [9061022] (imputed)	N
1482	chr7	117610289	117610290	rs28438696	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	7q31.31		rs28438696-C	0.4	2E-10		6.34	z score increase	Affymetrix [9061022] (imputed)	N
1482	chr7	117611249	117611250	rs7784849	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	7q31.31	ERC2	rs7784849-?		9E-9				NR [7428630] (imputed)	N
1482	chr7	117614922	117614923	rs10237233	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	7q31.31	CTTNBP2	rs10237233-?		5E-15				NR [7428630] (imputed)	N
1482	chr7	117623181	117623182	rs10270826	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mode of anisotropy)	17,706 European ancestry individuals	NA	7q31.31	NR	rs10270826-?		4E-9	(Genu of corpus callosum)			NR [8955960] (imputed)	N
1482	chr7	117625598	117625599	rs150346963	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Major depressive disorder (MTAG)	at least 170,756 European ancestry cases, at least 329,443 European ancestry controls	NA	7q31.31	NR	rs150346963-T	0.4118	6E-9		0.024501354	[0.016-0.033] unit increase	NR [NR]	N
1482	chr7	117629584	117629585	rs6968967	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	7q31.31		rs6968967-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1482	chr7	117632974	117632975	rs6947612	29891935	Choquet H	2018-06-11	Nat Commun	A multiethnic genome-wide association study of primary open-angle glaucoma identifies novel risk loci.	Glaucoma (primary open-angle)	10,523 European ancestry cases, 203,579 European ancestry controls, 411 Hispanic cases, 4,778 Hispanic controls, 463 East Asian ancestry cases, 4,907 East Asian ancestry controls, 298 African American cases, 1,549 African American controls, 204 South Asian ancestry cases, 4,916 South Asian ancestry controls, 272 African British cases, 4,831 African British controls, 144 mixed ancestry cases, 3,427 mixed ancestry controls	NA	7q31.31	CTTNBP2, LSM8	rs6947612-G	NR	1E-8		1.0869565	[1.05-1.11]	Affymetrix [at least 665500] (imputed)	N
1482	chr7	117635381	117635382	rs2188836	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Intraocular pressure	133,492 European ancestry individuals	NA	7q31.31	CTTNBP2	rs2188836-C	0.58	1E-10				Affymetrix, Illumina [8002429] (imputed)	N
1482	chr7	117635381	117635382	rs2188836	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Glaucoma	7,947 British ancestry cases, 119,318 British ancestry controls	NA	7q31.31	CTTNBP2	rs2188836-T	0.42	3E-7		1.0869565	NR	Affymetrix [at least 8002429] (imputed)	N
1482	chr7	117635381	117635382	rs2188836	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Intraocular pressure	133,492 European ancestry individuals	NA	7q31.31	CTTNBP2	rs2188836-?	NR	1E-10		0.0836	[0.058-0.109] unit increase	Affymetrix, Illumina [up to 40000000] (imputed)	N
1482	chr7	117635381	117635382	rs2188836	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Glaucoma	11,018 European ancestry cases, 126,068 European ancestry controls	NA	7q31.31	CTTNBP2	rs2188836-?	NR	1E-7		1.0862159	[1.05350636920412-1.11994099401054]	Affymetrix [up to 40000000] (imputed)	N
1482	chr7	117636110	117636111	rs10230941	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 19)	19,670 European ancestry individuals	NA	7q31.31		rs10230941-?	NR	2E-11				NR [9705931] (imputed)	N
1482	chr7	117636110	117636111	rs10230941	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	23,963 European ancestry cases, 306,942 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	43,254 European ancestry cases, 1,471,118 European ancestry controls	7q31.31	CTTNBP2, LSM8	rs10230941-C	NR	8E-17		0.0614	unit decrease	Illumina [15409056] (imputed)	N
1482	chr7	117636110	117636111	rs10230941	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	16,677 European ancestry cases, 199,580 European ancestry controls	7,286 European ancestry cases, 107,362 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	7q31.31	CTTNBP2, LSM8	rs10230941-C	NR	9E-9		0.92626	[0.9-0.95]	Affymetrix, Illumina [14822926] (imputed)	N
1482	chr7	117636110	117636111	rs10230941	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	7q31.31	CTTNBP2	rs10230941-C	0.64	5E-11		0.088	[0.063-0.113] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1482	chr7	117636110	117636111	rs10230941	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	7q31.31	CTTNBP2, LSM8	rs10230941-C	0.6415	2E-8		0.082	[0.053-0.111] unit decrease	Affymetrix [~ 11900000] (imputed)	N
1482	chr7	117674805	117674806	rs76108901	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental longevity (mother's age at death)	52,776 middle-aged British individuals	NA	7q31.31	NR	rs76108901-?	NR	2E-6		0.05207	[0.031-0.074] unit decrease	Affymetrix [9658292] (imputed)	N
1483	chr7	117705256	117705257	rs39745	30108155	Hebbar P	2018-08-14	J Lipid Res	Genome-wide association study identifies novel recessive genetic variants for high TGs in an Arab population.	Triglyceride levels	1,353 Kuwaiti ancestry individuals	1,176 Kuwaiti ancestry individuals	7q31.31	CTTNBP2, LSM8	rs39745-T	NR	2E-8		5.643	z-score increase	Illumina [632375]	N
1483	chr7	117779711	117779712	rs112560678	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Superior temporal gyrus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	7q31.31	NR	rs112560678-?		2E-6				Illumina [4322238] (imputed)	N
1484	chr7	117882853	117882854	rs62468166	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Superior temporal gyrus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	7q31.31	NR	rs62468166-?		2E-6				Illumina [4322238] (imputed)	N
1485	chr7	117991894	117991895	rs41997	22872573	Hu L	2012-08-07	Clin Cancer Res	Genome-wide association study of prognosis in advanced non-small cell lung cancer patients receiving platinum-based chemotherapy.	Response to platinum-based chemotherapy in non-small-cell lung cancer	528 Han Chinese ancestry cases	340 Han Chinese ancestry cases, 409 European ancestry cases	7q31.31	CFTR, ST7, WNT2	rs41997-A	NR	4E-7	(Han Chinese)	1.52	[1.28-1.79]	NR [576351]	N
1485	chr7	118036322	118036323	rs75147459	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	7q31.31	ANKRD7	rs75147459-C	0.955073	1E-14		0.0387247	[0.029-0.049] unit decrease	NR [13737936] (imputed)	N
1485	chr7	118084398	118084399	rs117034284	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		ANKRD7	rs117034284-?	NR	2E-8	(female)	0.503897	[NR] unit increase	Affymetrix [NR] (imputed)	N
1486	chr7	118159548	118159549	rs2106595	23049750	Kumasaka N	2012-09-25	PLoS One	Haplotypes with copy number and single nucleotide polymorphisms in CYP2A6 locus are associated with smoking quantity in a Japanese population.	Smoking behavior	11,696 Japanese ancestry smokers	5,462 Japanese ancestry smokers	7q31.31	NR	rs2106595-G	NR	5E-6		0.88	[0.51-1.25] unit increase	Illumina [2312503] (imputed)	N
1487	chr7	118281409	118281410	rs11509197	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (90 or 130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	7q31.31	intergenic	rs11509197-?	NR	2E-7		0.133	[0.064-0.202] unit decrease	Illumina [at least 13000000] (imputed)	N
1487	chr7	118288653	118288654	rs4730882	34330890	Ip HF	2021-07-30	Transl Psychiatry	Genetic association study of childhood aggression across raters, instruments, and age.	Childhood aggressive behavior	87,485 European ancestry individuals	NA	7q31.31		rs4730882-C	0.968444736	5E-6		0.06464467	[0.037-0.092] unit decrease	Affymetrix, Illumina [up to 7284995] (imputed)	N
1487	chr7	118297843	118297844	rs9641609	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque score in type 2 diabetes	691 African American individuals	205 African American individuals	7q31.31	intergenic	rs9641609-?	NR	2E-7		0.936	[0.52-1.35] unit decrease	Illumina [at least 13000000] (imputed)	N
1487	chr7	118299288	118299289	rs4730883	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	7q31.31	intergenic	rs4730883-C	0.490825	5E-8		0.0113164	[0.0073-0.0154] unit decrease	NR [16516521] (imputed)	N
1487	chr7	118325733	118325734	rs6972286	30926877	Brcic L	2019-03-29	Sci Rep	Genome-wide association analysis suggests novel loci underlying thyroid antibodies in Hashimoto's thyroiditis.	Anti-thyroid peroxidase (TPOAb) and anti-thyroglobulin (TgAb) levels in Hashimoto's thyroiditis	405 European ancestry cases	NA	7q31.31	ANKRD7, LSM8	rs6972286-A	0.469	2E-6				Illumina [6007542] (imputed)	N
1487	chr7	118325733	118325734	rs6972286	30926877	Brcic L	2019-03-29	Sci Rep	Genome-wide association analysis suggests novel loci underlying thyroid antibodies in Hashimoto's thyroiditis.	Anti-thyroglobulin (TgAb) levels in Hashimoto's thyroiditis	405 European ancestry cases	NA	7q31.31	ANKRD7, LSM8	rs6972286-A	0.469	2E-7		0.358	[0.22-0.49] unit increase	Illumina [6007542] (imputed)	N
1487	chr7	118334291	118334292	rs140316695	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7q31.31	NR	rs140316695-G	0.01916	2E-9	(HPX)	0.4804	NR unit increase	Illumina [1671387] (imputed)	N
1488	chr7	118382942	118382943	rs35736414	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	7q31.31		rs35736414-?	NR	4E-9		0.0192112	[0.013-0.025] unit increase	Affymetrix [20259828] (imputed)	N
1488	chr7	118405907	118405908	rs11763832	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Pursuit maintenance gain	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	7q31.31	ANKRD7	rs11763832-G	0.03205	9E-6	(African)			Illumina [4404269] (imputed)	N
1490	chr7	118626212	118626213	rs10242233	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	7q31.31	NR	rs10242233-?	NR	5E-10				Affymetrix [NR]	N
1492	chr7	118981959	118981960	rs139851768	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	7q31.31		rs139851768-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1493	chr7	119037513	119037514	rs78619335	31596875	Traylor M	2019-10-09	PLoS One	Genetic associations with radiological damage in rheumatoid arthritis: Meta-analysis of seven genome-wide association studies of 2,775 cases.	Joint damage in rheumatoid arthritis	2,527 European ancestry individuals	NA	7q31.31	intergenic	rs78619335-?	NR	2E-6				Affymetrix, Illumina [2723488] (imputed)	N
1493	chr7	119105161	119105162	rs62477365	30954325	Kamboh MI	2019-03-11	Neurobiol Aging	Population-based genome-wide association study of cognitive decline in older adults free of dementia: identification of a novel locus for the attention domain.	Age-related cognitive decline (language) (slope of z-scores)	1,145 European ancestry individuals	NA	7q31.31	ANKRD7, KCND2	rs62477365-C	0.09	4E-6		0.34	unit decrease	Illumina [5600000] (imputed)	N
1493	chr7	119140601	119140602	rs150382487	30452639	Butali A	2018-11-19	Hum Mol Genet	Genomic analyses in african populations identify novel risk loci for cleft palate.	Cleft palate	205 Sub-Saharan African ancestry cases, 2,159 Sub-Saharan African ancestry controls	100 Sub-Saharan African ancestry cases, 79 African American cases, 648 Sub-Saharan African ancestry controls, 186 African American controls	7q31.31	NR	rs150382487-T	NR	2E-7		5.169	NR z-score decrease	Illumina [~ 17000000] (imputed)	N
1494	chr7	119146158	119146159	rs188681640	30452639	Butali A	2018-11-19	Hum Mol Genet	Genomic analyses in african populations identify novel risk loci for cleft palate.	Cleft palate	205 Sub-Saharan African ancestry cases, 2,159 Sub-Saharan African ancestry controls	100 Sub-Saharan African ancestry cases, 79 African American cases, 648 Sub-Saharan African ancestry controls, 186 African American controls	7q31.31	NR	rs188681640-?	NR	2E-7		5.163	NR z-score increase	Illumina [~ 17000000] (imputed)	N
1494	chr7	119161352	119161353	rs182830500	30452639	Butali A	2018-11-19	Hum Mol Genet	Genomic analyses in african populations identify novel risk loci for cleft palate.	Cleft palate	205 Sub-Saharan African ancestry cases, 2,159 Sub-Saharan African ancestry controls	100 Sub-Saharan African ancestry cases, 79 African American cases, 648 Sub-Saharan African ancestry controls, 186 African American controls	7q31.31	NR	rs182830500-T	NR	3E-7		5.108	NR z-score increase	Illumina [~ 17000000] (imputed)	N
1494	chr7	119205740	119205741	rs73719951	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	7q31.31		rs73719951-?	NR	7E-9				NR [~ 8900000] (imputed)	N
1494	chr7	119252363	119252364	rs149328960	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 157,769 European ancestry controls	NA	7q31.31	NR	rs149328960-?	NR	4E-7		0.0681	[0.042-0.094] unit decrease	Affymetrix, Illumina [12923718] (imputed)	N
1494	chr7	119266269	119266270	rs143238378	30452639	Butali A	2018-11-19	Hum Mol Genet	Genomic analyses in african populations identify novel risk loci for cleft palate.	Cleft palate	205 Sub-Saharan African ancestry cases, 2,159 Sub-Saharan African ancestry controls	100 Sub-Saharan African ancestry cases, 79 African American cases, 648 Sub-Saharan African ancestry controls, 186 African American controls	7q31.31	NR	rs143238378-G	NR	2E-7		5.214	NR z-score decrease	Illumina [~ 17000000] (imputed)	N
1496	chr7	119477536	119477537	rs12706265	33713409	Chenoweth MJ	2021-03-13	Nicotine Tob Res	A genome-wide association study of nausea incidence in varenicline-treated cigarette smokers.	Nausea incidence in varenicline-treated smokers	57 European ancestry cases, 132 European ancestry controls	NA	7q31.31		rs12706265-C	NR	1E-5		3.35	[1.79-6.27]	Illumina [NR] (imputed)	N
1497	chr7	119588270	119588271	rs11766524	28468790	Agopian AJ	2017-06-01	Circ Cardiovasc Genet	Genome-Wide Association Studies and Meta-Analyses for Congenital Heart Defects.	Left ventricular obstructive tract defect (maternal effect)	up to 439 European ancestry trios	NA	7q31.31	intergenic	rs11766524-?	NR	7E-6		1.9189513	[1.44-2.55]	Illumina [at least 4756722] (imputed)	N
1497	chr7	119606631	119606632	rs17142462	22610502	Kennedy RB	2012-05-19	Hum Genet	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IL-12p40)	Up to 512 European ancestry individuals, up to 199 African American individuals	NA	7q31.31	KCND2	rs17142462-A		3E-9	(EA)			Illumina [NR]	N
1497	chr7	119614802	119614803	rs2190091	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 5 levels	252 European ancestry individuals	NA	7q31.31		rs2190091-C	NR	2E-7		0.77888	[0.49-1.07] unit increase	Illumina [NR] (imputed)	N
1497	chr7	119616156	119616157	rs79076992	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	7q31.31		rs79076992-?	NR	9E-13				NR [~ 8900000] (imputed)	N
1497	chr7	119618297	119618298	rs188054406	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs non-severe)	86 Finnish ancestry male severe erosion cases, 50 Finnish ancestry female severe erosion cases, 817 Finnish ancestry male non-severe erosion controls, 991 Finnish ancestry female non-severe erosion controls	NA	7q31.31	NR	rs188054406-?	NR	8E-6				Illumina [NR] (imputed)	N
1497	chr7	119662549	119662550	rs17520061	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter alcoholic beverage consumption	336,448 European ancestry individuals	39,924 European ancestry individuals	7q31.31	LVCAT5	rs17520061-C	0.8584	6E-8		0.008	[0.0051-0.0109] unit increase	Affymetrix [~ 7740000] (imputed)	N
1498	chr7	119674507	119674508	rs17520265	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	7q31.31	NR	rs17520265-G	0.9658	3E-8		1.0952903	[1.06-1.13]	Affymetrix, Illumina [NR] (imputed)	N
1498	chr7	119724536	119724537	rs62477416	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,963 Sub-Saharan African ancestry females	NA	7q31.31		rs62477416-G	0.723309	4E-6		0.0133893	[0.0077-0.0191] unit increase	Illumina [13900000] (imputed)	N
1498	chr7	119774008	119774009	rs6969329	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	7q31.31		rs6969329-?	NR	7E-23				NR [~ 8900000] (imputed)	N
1498	chr7	119789790	119789791	rs531968440	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	7q31.31	KCND2	rs531968440-C	0.998292	2E-15		0.106231	[0.08-0.132] unit decrease	NR [13737936] (imputed)	N
1498	chr7	119789790	119789791	rs531968440	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	7q31.31		rs531968440-?	NR	3E-19		0.137415	[0.11-0.17] unit decrease	Affymetrix [20259828] (imputed)	N
1499	chr7	119820996	119820997	rs6973947	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	7q31.31		rs6973947-C	0.805	8E-10		0.009	[0.007-0.011] unit increase	NR [NR] (imputed)	N
1499	chr7	119821192	119821193	rs6956570	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque score in type 2 diabetes	691 African American individuals	205 African American individuals	7q31.31	intergenic	rs6956570-?	NR	9E-6		0.788	[0.36-1.22] unit decrease	Illumina [at least 13000000] (imputed)	N
1499	chr7	119917157	119917158	rs4730954	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	7q31.31	NR	rs4730954-T	0.857	7E-10		0.00951073	[0.0065-0.0125] unit increase	NR [9732723] (imputed)	N
1499	chr7	119919705	119919706	rs150187724	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	7q31.31	KCND2	rs150187724-C	0.985689	3E-10		0.0413973	[0.029-0.054] unit decrease	NR [13737936] (imputed)	N
1500	chr7	119953488	119953489	rs718897	32469969	Pott J	2020-05-29	PLoS One	Genome-wide analysis of carotid plaque burden suggests a role of IL5 in men.	Mean degree of stenosis	727 European ancestry men, 550 European ancestry women	NA	7q31.31	KCND2	rs718897-A	0.0106182	2E-7	(women)	0.866299	[0.55-1.19] % decrease	Affymetrix [532676] (imputed)	N
1500	chr7	119953488	119953489	rs718897	32469969	Pott J	2020-05-29	PLoS One	Genome-wide analysis of carotid plaque burden suggests a role of IL5 in men.	Maximum stenosis	727 European ancestry men, 550 European ancestry women	NA	7q31.31	KCND2	rs718897-A	0.0106182	9E-7	(women)	0.985432	[0.6-1.37] % decrease	Affymetrix [532676] (imputed)	N
1500	chr7	119972158	119972159	rs184081583	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	7q31.31	KCND2	rs184081583-A	0.998701	4E-9		0.117332	[0.078-0.156] unit decrease	NR [13737936] (imputed)	N
1501	chr7	120172494	120172495	rs148768383	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	7q31.31		rs148768383-?	NR	5E-11				NR [~ 8900000] (imputed)	N
1502	chr7	120305148	120305149	rs728115	22488850	Zuo L	2012-04-04	Am J Med Genet B Neuropsychiatr Genet	Genome-wide search for replicable risk gene regions in alcohol and nicotine co-dependence.	Alcohol and nicotine co-dependence	818 European ancestry cases, 1,396 European ancestry controls, 449 African American cases, 480 African American controls	NA	7q31.31	KCND2	rs728115-?	NR	4E-6				Illumina [805814]	N
1503	chr7	120352109	120352110	rs11984204	32439431	Simard M	2020-05-19	J Allergy Clin Immunol	Polygenic risk score for atopic dermatitis in the Canadian population.	Atopic dermatitis (moderate to severe)	222 South East Asian ancestry, East Asian ancestry, South Asian ancestry, African American or Afro-Caribbean, European ancestry, Greater Middle Eastern (Middle Eastern, North African or Persian) cases, 2,466 Greater Middle Eastern (Middle Eastern, North African or Persian), Hispanic or Latin American, NR moderate to severe atopic dermatitis cases, 2,466 South East Asian ancestry, East Asian ancestry, South Asian ancestry, African American or Afro-Caribbean, European ancestry, Greater Middle Eastern (Middle Eastern, North African or Persian) cases, 2,466 Greater Middle Eastern (Middle Eastern, North African or Persian), Hispanic or Latin American, NR controls without moderate to severe atopic dermatitis	NA	7q31.31		rs11984204-G	NR	3E-11	(additive)	0.999	[0.705-1.292] unit increase	Illumina [5894709] (imputed)	N
1503	chr7	120368353	120368354	rs188411183	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	7q31.31		rs188411183-?	NR	1E-22		0.0355306	[0.028-0.043] unit decrease	Affymetrix [20259828] (imputed)	N
1503	chr7	120409288	120409289	rs111712190	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter alcoholic beverage consumption	336,448 European ancestry individuals	39,924 European ancestry individuals	7q31.31	TSPAN12	rs111712190-C	0.9564	9E-6		0.0111	[0.0062-0.016] unit increase	Affymetrix [~ 7740000] (imputed)	N
1503	chr7	120420441	120420442	rs41613	34620984	Skuladottir AT	2021-10-07	Commun Biol	A genome-wide meta-analysis uncovers six sequence variants conferring risk of vertigo.	Vertigo	48,072 European ancestry cases, 894,541 European ancestry controls	NA	7q31.31		rs41613-C	NR	5E-6		1.03967		Affymetrix, Illumina [62056310] (imputed)	N
1503	chr7	120449090	120449091	rs71569047	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	7q31.31	NR	rs71569047-T	0.0724	2E-8	(European)	0.0835	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
1503	chr7	120449090	120449091	rs71569047	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	7q31.31	NR	rs71569047-T	0.0703	2E-12		0.0999	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
1504	chr7	120501087	120501088	rs73427834	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	7q31.31		rs73427834-?	NR	1E-47				NR [~ 8900000] (imputed)	N
1504	chr7	120519266	120519267	rs201852005	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	7q31.31		rs201852005-?	NR	4E-14		0.0973806	[0.071-0.124] unit decrease	Affymetrix [20259828] (imputed)	N
1504	chr7	120526427	120526428	rs34396633	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	7q31.31	TSPAN12	rs34396633-C	0.998552	3E-12		0.128304	[0.092-0.164] unit decrease	NR [13737936] (imputed)	N
1504	chr7	120579636	120579637	rs12706298	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	7q31.31	NR	rs12706298-T	0.284	1E-11		0.0495	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
1505	chr7	120591617	120591618	rs61088337	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7q31.31	NR	rs61088337-C	0.02962	2E-8	(LRG1)	0.03735	NR unit increase	Illumina [1671387] (imputed)	N
1505	chr7	120597100	120597101	rs112858791	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7q31.31	NR	rs112858791-A	0.01742	1E-8	(LRG1)	0.04648	NR unit increase	Illumina [1671387] (imputed)	N
1505	chr7	120644819	120644820	rs34241305	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	7q31.31	CPED1	rs34241305-A	0.54117	3E-11		0.014995609	[0.011-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
1505	chr7	120662968	120662969	rs2192287	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	7q31.31		rs2192287-?	NR	1E-21				NR [~ 8900000] (imputed)	N
1505	chr7	120678881	120678882	rs1080807	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	7q31.31	NR	rs1080807-T	0.563128	3E-10		0.011585	[0.008-0.0152] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1505	chr7	120710753	120710754	rs148560125	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	7q31.31		rs148560125-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1505	chr7	120711854	120711855	rs10261386	30130595	Dominguez-Cruz MG	2018-08-18	Gene	Pilot genome-wide association study identifying novel risk loci for type 2 diabetes in a Maya population.	Type 2 diabetes	45 Maya ancestry cases, 47 Maya ancestry controls	NA	7q31.31	CPED1	rs10261386-?	0.734	3E-7		6.711409		Affymetrix [757439]	N
1505	chr7	120713654	120713655	rs529874871	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	7q31.31		rs529874871-?	NR	7E-50		0.290702	[0.25-0.33] unit decrease	Affymetrix [20259828] (imputed)	N
1506	chr7	120721086	120721087	rs73215353	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical thickness	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	7q31.31	NR	rs73215353-T	0.0976	8E-8	(Superior Parietal)	0.005527247	[0.0035-0.0075] unit increase	Affymetrix, Illumina [NR]	N
1506	chr7	120725808	120725809	rs2110281	28743860	Medina-Gomez C	2017-07-25	Nat Commun	Bivariate genome-wide association meta-analysis of pediatric musculoskeletal traits reveals pleiotropic effects at the SREBF1/TOM1L2 locus.	Bone mineral density (paediatric, total body less head)	8,327 European ancestry individuals, 2,087 individuals	NA	7q31.31	Intergenic	rs2110281-A	0.35	3E-9		0.0859	[NR] unit decrease	Illumina [2276811] (imputed)	N
1506	chr7	120727231	120727232	rs2908574	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	7q31.31	CPED1	rs2908574-T	0.0905544	7E-15		0.0246306	[0.018-0.031] unit decrease	NR [13737936] (imputed)	N
1506	chr7	120736614	120736615	rs798933	34437536	Akhtari FS	2021-08-26	PLoS Genet	High-throughput screening and genome-wide analyses of 44 anticancer drugs in the 1000 Genomes cell lines reveals an association of the NQO1 gene with the response of multiple anticancer drugs.	Response to nintedanib	680 lymphoblastoid cell lines from Han Chinese ancestry, Japanese ancestry, Kenyan ancestry, Mexican ancestry, Tuscan ancestry, Yoruban ancestry, British ancestry, Columbian ancestry individuals	NA	7q31.31		rs798933-?	NR	8E-7				Illumina [1510701]	N
1506	chr7	120742979	120742980	rs148771817	26367794	Zheng HF	2015-10-01	Nature	Whole-genome sequencing identifies EN1 as a determinant of bone density and fracture.	Forearm bone mineral density	6,627 European ancestry individuals, 1,221 whole genome sequenced European ancestry individuals, 295 whole exome sequenced European ancestry individuals,	2,662 European ancestry individuals	7q31.31	CPED1/WNT16	rs148771817-T	0.012	1E-11		0.45	[0.32-0.58] unit increase	Illumina [at least 14018627] (imputed)	N
1506	chr7	120747307	120747308	rs13223036	24945404	Kemp JP	2014-06-19	PLoS Genet	Phenotypic dissection of bone mineral density reveals skeletal site specificity and facilitates the identification of novel loci in the genetic regulation of bone mass attainment.	Bone mineral density (paediatric, skull)	7,976 European ancestry children, 289 Surinamese ancestry children, 300 Turkish ancestry children, 232 Moroccan ancestry children, 588 children	NA	7q31.31	FAM3C, WNT16, CPED1	rs13223036-T	NR	3E-22	(EA)	0.1652	[0.13-0.2] unit increase	Illumina [~ 2500000] (imputed)	N
1506	chr7	120747307	120747308	rs13223036	24945404	Kemp JP	2014-06-19	PLoS Genet	Phenotypic dissection of bone mineral density reveals skeletal site specificity and facilitates the identification of novel loci in the genetic regulation of bone mass attainment.	Bone mineral density (paediatric, skull)	7,976 European ancestry children, 289 Surinamese ancestry children, 300 Turkish ancestry children, 232 Moroccan ancestry children, 588 children	NA	7q31.31	FAM3C, WNT16, CPED1	rs13223036-T	0.64	2E-28		0.169	[0.14-0.2] unit increase	Illumina [~ 2500000] (imputed)	N
1506	chr7	120758898	120758899	rs798943	24945404	Kemp JP	2014-06-19	PLoS Genet	Phenotypic dissection of bone mineral density reveals skeletal site specificity and facilitates the identification of novel loci in the genetic regulation of bone mass attainment.	Bone mineral density (paediatric, upper limb)	8,007 European ancestry children, 289 Surinamese ancestry children, 300 Turkish ancestry children, 232 Moroccan ancestry children, 588 children	NA	7q31.31	FAM3C, CPED1, WNT16	rs798943-G	NR	3E-32	(EA)	0.2016	[0.17-0.24] unit increase	Illumina [~ 2500000] (imputed)	N
1506	chr7	120758898	120758899	rs798943	24945404	Kemp JP	2014-06-19	PLoS Genet	Phenotypic dissection of bone mineral density reveals skeletal site specificity and facilitates the identification of novel loci in the genetic regulation of bone mass attainment.	Bone mineral density (paediatric, upper limb)	8,007 European ancestry children, 289 Surinamese ancestry children, 300 Turkish ancestry children, 232 Moroccan ancestry children, 588 children	NA	7q31.31	FAM3C, CPED1, WNT16	rs798943-G	0.61	1E-37		0.195	[0.17-0.22] unit increase	Illumina [~ 2500000] (imputed)	N
1506	chr7	120759189	120759189	rs566523025	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	7q31.31	CPED1	rs566523025-CT	NR	8E-9		0.0171041	[0.011-0.023] unit decrease	Affymetrix [321114] (imputed)	N
1506	chr7	120759583	120759584	rs182975328	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	7q31.31	CPED1	rs182975328-A	0.99563	3E-9		0.0571726	[0.038-0.076] unit decrease	NR [13737936] (imputed)	N
1506	chr7	120761037	120761041	rs564058644	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	7q31.31		rs564058644-?	NR	3E-86		0.050126	[0.045-0.055] unit increase	Affymetrix [20259828] (imputed)	N
1506	chr7	120767593	120767595	rs67688816	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	7q31.31		rs67688816-C	NR	3E-16		0.014	[0.011-0.017] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1506	chr7	120774115	120774116	rs34249834	29240982	Mitchell JA	2017-12-14	J Bone Miner Res	Multi-dimensional bone density phenotyping reveals new insights in to genetic regulation of the pediatric skeleton.	Pediatric areal bone mineral density (radius vs spine & hip discordant skeletal phenotype)	470 European ancestry females, 463 European ancestry males, 256 African and Asian ancestry females, 210 African and Asian ancestry males	238 European ancestry females, 246 European ancestry males	7q31.31	CPED1	rs34249834-C	0.66	4E-12	(female)	0.33	[0.23-0.43] unit increase	Illumina [NR] (imputed)	N
1506	chr7	120774115	120774116	rs34249834	29240982	Mitchell JA	2017-12-14	J Bone Miner Res	Multi-dimensional bone density phenotyping reveals new insights in to genetic regulation of the pediatric skeleton.	Pediatric areal bone mineral density (radius vs spine & hip discordant skeletal phenotype)	470 European ancestry females, 463 European ancestry males, 256 African and Asian ancestry females, 210 African and Asian ancestry males	238 European ancestry females, 246 European ancestry males	7q31.31	CPED1	rs34249834-C	0.65	4E-12	(EA, female)	0.32	[0.22-0.42] unit increase	Illumina [NR] (imputed)	N
1506	chr7	120774159	120774160	rs7801723	30287806	Zhou H	2018-10-04	Transl Psychiatry	Genome-wide association study identifies glutamate ionotropic receptor GRIA4 as a risk gene for comorbid nicotine dependence and major depression.	Nicotine dependence and major depression (severity of comorbidity)	3,724 African American individuals	NA	7q31.31	CPED1	rs7801723-T	0.7433	7E-6		0.5533	[0.31-0.79] unit decrease	Illumina [9520174] (imputed)	N
1506	chr7	120779575	120779576	rs34770628	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric bone mineral content (radius)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	7q31.31	CPED1	rs34770628-T	0.367	7E-9		0.211735	[0.14-0.28] unit decrease	Illumina [~ 6600000] (imputed)	N
1506	chr7	120780482	120780483	rs884373	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 26)	4,680 European ancestry individuals	3,566 European ancestry individuals	7q31.31		rs884373-T	0.388003446	7E-17				Illumina [7417619] (imputed)	N
1506	chr7	120785063	120785064	rs13245690	28743860	Medina-Gomez C	2017-07-25	Nat Commun	Bivariate genome-wide association meta-analysis of pediatric musculoskeletal traits reveals pleiotropic effects at the SREBF1/TOM1L2 locus.	TB-LM or TBLH-BMD (pleiotropy)	8,327 European ancestry individuals, 2,087 individuals	NA	7q31.31	Intergenic	rs13245690-G	0.37	4E-11				Illumina [2276811] (imputed)	N
1506	chr7	120785063	120785064	rs13245690	22504420	Estrada K	2012-04-15	Nat Genet	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Lumbar spine bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	7q31.31	C7orf58	rs13245690-A	0.65	2E-11		0.05	[NR] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1506	chr7	120790286	120790287	rs6950680	33547071	Bonfante B	2021-02-05	Sci Adv	A GWAS in Latin Americans identifies novel face shape loci, implicating VPS13B and a Denisovan introgressed region in facial variation.	Facial morphology (jaw protrusion 5)	6,169 Latin American individuals	NA	7q31.31		rs6950680-?	NR	6E-6				Illumina [8703729] (imputed)	N
1506	chr7	120790286	120790287	rs6950680	33547071	Bonfante B	2021-02-05	Sci Adv	A GWAS in Latin Americans identifies novel face shape loci, implicating VPS13B and a Denisovan introgressed region in facial variation.	Facial morphology (jaw protrusion 2)	6,169 Latin American individuals	NA	7q31.31		rs6950680-?	NR	4E-8				Illumina [8703729] (imputed)	N
1506	chr7	120790286	120790287	rs6950680	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7q31.31		rs6950680-?	NR	1E-21				NR [~ 8900000] (imputed)	N
1506	chr7	120790532	120790533	rs35682088	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric bone mineral content (radius)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	7q31.31	CPED1	rs35682088-C	0.145	1E-7	(Females)	0.344037	[0.22-0.47] unit increase	Illumina [~ 6600000] (imputed)	N
1506	chr7	120803285	120803286	rs35789132	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	7q31.31	NR	rs35789132-A	0.663	4E-23		0.0596	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
1506	chr7	120806195	120806196	rs12706319	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	7q31.31	CPED1	rs12706319-C	NR	8E-9		0.0166766	[0.011-0.022] unit decrease	Affymetrix [319769] (imputed)	N
1506	chr7	120813919	120813920	rs67991850	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	7q31.31		rs67991850-T	0.36	8E-16		8.06	z score increase	Affymetrix [9061022] (imputed)	N
1506	chr7	120813919	120813920	rs67991850	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	7q31.31	NR	rs67991850-?		1E-8	(Corticospinal tract )			NR [8955960] (imputed)	N
1506	chr7	120813919	120813920	rs67991850	29240982	Mitchell JA	2017-12-14	J Bone Miner Res	Multi-dimensional bone density phenotyping reveals new insights in to genetic regulation of the pediatric skeleton.	Pediatric areal bone mineral density (radius vs spine & hip discordant skeletal phenotype)	470 European ancestry females, 463 European ancestry males, 256 African and Asian ancestry females, 210 African and Asian ancestry males	238 European ancestry females, 246 European ancestry males	7q31.31	CPED1	rs67991850-C	0.65	3E-11		0.24	[0.16-0.32] unit increase	Illumina [NR] (imputed)	N
1506	chr7	120813919	120813920	rs67991850	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric areal bone mineral density (radius)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	7q31.31	CPED1	rs67991850-T	0.368	9E-12	(Females)	0.346891	[0.25-0.44] unit decrease	Illumina [~ 6600000] (imputed)	N
1506	chr7	120816269	120816270	rs10214981	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	7q31.31		rs10214981-?	NR	4E-242		0.0792205	[0.074-0.084] unit increase	Affymetrix [20259828] (imputed)	N
1506	chr7	120816627	120816628	rs6971407	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	7q31.31		rs6971407-T	0.49	4E-8		5.51	z score increase	Affymetrix [9061022] (imputed)	N
1506	chr7	120821262	120821263	rs189448695	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	7q31.31	CPED1	rs189448695-A	0.998713	2E-9		0.110474	[0.075-0.146] unit decrease	NR [13737936] (imputed)	N
1506	chr7	120825317	120825318	rs6963115	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric areal bone mineral density (radius)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	7q31.31	CPED1	rs6963115-A	0.398	4E-12		0.259885	[0.19-0.33] unit increase	Illumina [~ 6600000] (imputed)	N
1506	chr7	120830214	120830215	rs9640799	29240982	Mitchell JA	2017-12-14	J Bone Miner Res	Multi-dimensional bone density phenotyping reveals new insights in to genetic regulation of the pediatric skeleton.	Pediatric areal bone mineral density (radius vs spine & hip discordant skeletal phenotype)	470 European ancestry females, 463 European ancestry males, 256 African and Asian ancestry females, 210 African and Asian ancestry males	238 European ancestry females, 246 European ancestry males	7q31.31	CPED1	rs9640799-A	0.4	5E-12	(EA)	0.27	[0.19-0.35] unit decrease	Illumina [NR] (imputed)	N
1506	chr7	120843515	120843516	rs7797976	26041818	Chesi A	2015-06-03	Hum Mol Genet	A trans-ethnic genome-wide association study identifies gender-specific loci influencing pediatric aBMD and BMC at the distal radius.	Pediatric bone mineral content (radius)	178 African American females, 159 African American males, 474 European ancestry females, 434 European ancestry males, 54 Hispanic and other ancestry females, 72 Hispanic and other ancestry males	242 European ancestry females, 239 European ancestry males	7q31.31	CPED1, WNT16, FAM3C	rs7797976-T		3E-8				Illumina [7238679] (imputed)	N
1506	chr7	120843515	120843516	rs7797976	26041818	Chesi A	2015-06-03	Hum Mol Genet	A trans-ethnic genome-wide association study identifies gender-specific loci influencing pediatric aBMD and BMC at the distal radius.	Pediatric bone mineral content (radius)	178 African American females, 159 African American males, 474 European ancestry females, 434 European ancestry males, 54 Hispanic and other ancestry females, 72 Hispanic and other ancestry males	242 European ancestry females, 239 European ancestry males	7q31.31	CPED1	rs7797976-T	0.358	6E-7	(females)	0.21	[0.13-0.29] Z score decrease	Illumina [7238679] (imputed)	N
1506	chr7	120843515	120843516	rs7797976	26041818	Chesi A	2015-06-03	Hum Mol Genet	A trans-ethnic genome-wide association study identifies gender-specific loci influencing pediatric aBMD and BMC at the distal radius.	Pediatric areal bone mineral density (radius)	178 African American females, 159 African American males, 474 European ancestry females, 434 European ancestry males, 54 Hispanic and other ancestry females, 72 Hispanic and other ancestry males	242 European ancestry females, 239 European ancestry males	7q31.31	CPED1	rs7797976-T	0.358	2E-11	(females)	0.298	[0.21-0.38] Z score decrease	Illumina [7238679] (imputed)	N
1506	chr7	120843515	120843516	rs7797976	26041818	Chesi A	2015-06-03	Hum Mol Genet	A trans-ethnic genome-wide association study identifies gender-specific loci influencing pediatric aBMD and BMC at the distal radius.	Pediatric areal bone mineral density (radius)	178 African American females, 159 African American males, 474 European ancestry females, 434 European ancestry males, 54 Hispanic and other ancestry females, 72 Hispanic and other ancestry males	242 European ancestry females, 239 European ancestry males	7q31.31	CPED1	rs7797976-T		3E-10				Illumina [7238679] (imputed)	N
1507	chr7	120869463	120869464	rs17284876	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	7q31.31		rs17284876-?	NR	1E-300				NR [~ 8900000] (imputed)	N
1507	chr7	120869561	120869566	rs77670845	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-2 levels	3,475 Finnish ancestry individuals	NA	7q31.31	NR	rs77670845-AGAAAT		1E-6		0.1195	[0.071-0.168] SD units decrease	NR [10700000] (imputed)	N
1507	chr7	120873437	120873438	rs6965195	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	7q31.31	NR	rs6965195-?	NR	3E-11				Affymetrix [~ 8270000] (imputed)	N
1507	chr7	120877000	120877001	rs1524506	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	7q31.31	CPED1	rs1524506-T	NR	3E-8		0.0158561	[0.01-0.021] unit decrease	Affymetrix [321114] (imputed)	N
1507	chr7	120880572	120880573	rs10480747	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric bone mineral content (radius)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	7q31.31	NR	rs10480747-C	0.335	1E-6		0.182	[0.11-0.25] unit decrease	Illumina [~ 6600000] (imputed)	N
1507	chr7	120889271	120889272	rs6942652	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	7q31.31	NA	rs6942652-C	0.4294	2E-12		0.0126	[0.0091-0.0161] unit decrease	NR [~ 27400000] (imputed)	N
1507	chr7	120894975	120894975	rs774863287	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	7q31.31		rs774863287-?	NR	5E-237		0.0834589	[0.078-0.089] unit decrease	Affymetrix [20259828] (imputed)	N
1507	chr7	120899069	120899070	rs6967129	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	7q31.31	NR	rs6967129-?		6E-9	(Corticospinal tract )			NR [8955960] (imputed)	N
1507	chr7	120902184	120902185	rs2222543	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	7q31.31	NR	rs2222543-G	0.62	4E-18		0.016	[0.012-0.02] unit increase	Affymetrix [2446094] (imputed)	N
1507	chr7	120902184	120902185	rs2222543	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	7q31.31	NR	rs2222543-G	0.62	5E-8				Affymetrix [2446094] (imputed)	N
1507	chr7	120903814	120903815	rs4609139	22792070	Medina-Gomez C	2012-07-05	PLoS Genet	Meta-analysis of genome-wide scans for total body BMD in children and adults reveals allelic heterogeneity and age-specific effects at the WNT16 locus.	Bone mineral density	1,834 European ancestry children, 825 children	11,052 European ancestry individuals	7q31.31	C7orf58	rs4609139-T	0.355	1E-10	(Conditional on rs917727)	0.081	[NR] unit decrease	Illumina [3021329] (imputed)	N
1507	chr7	120904816	120904817	rs4731009	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	7q31.31	NR	rs4731009-?	NR	8E-14				Affymetrix [~ 8270000] (imputed)	N
1507	chr7	120904816	120904817	rs4731009	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	7q31.31		rs4731009-?	NR	2E-14				NR [~ 8900000] (imputed)	N
1507	chr7	120907714	120907715	rs798914	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	7q31.31		rs798914-?	NR	1E-250		0.0688288	[0.065-0.073] unit decrease	Affymetrix [20259828] (imputed)	N
1507	chr7	120908081	120908082	rs2536150	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	7q31.31	NR	rs2536150-?		6E-10	(Corticospinal tract )			NR [8955960] (imputed)	N
1507	chr7	120908821	120908822	rs2536149	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	7q31.31	NR	rs2536149-?		2E-8	(Corticospinal tract )			NR [8955960] (imputed)	N
1507	chr7	120915267	120915268	rs798907	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	7q31.31	CADPS	rs798907-?		2E-9				NR [7428630] (imputed)	N
1507	chr7	120915267	120915268	rs798907	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	7q31.31	CPED1	rs798907-?		3E-8				NR [7428630] (imputed)	N
1507	chr7	120918862	120918863	rs149333699	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	7q31.31		rs149333699-?	NR	2E-37		0.292217	[0.25-0.34] unit decrease	Affymetrix [20259828] (imputed)	N
1507	chr7	120918862	120918863	rs149333699	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	7q31.31	CPED1	rs149333699-A	0.995727	7E-12	(men)	0.396155	[0.28-0.51] unit decrease	NR [17166351] (imputed)	N
1507	chr7	120918862	120918863	rs149333699	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	7q31.31	CPED1	rs149333699-A	0.995669	1E-19		0.350092	[0.27-0.43] unit decrease	NR [17166351] (imputed)	N
1507	chr7	120918862	120918863	rs149333699	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	7q31.31	CPED1	rs149333699-A	0.995618	2E-9	(women)	0.316074	[0.21-0.42] unit decrease	NR [17166351] (imputed)	N
1507	chr7	120933044	120933045	rs7795061	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	315,284 European ancestry male individuals	NA	7q31.31	NR	rs7795061-T	0.3492	2E-12		0.0132	[0.0095-0.0169] unit decrease	NR [~ 27400000] (imputed)	N
1507	chr7	120934583	120934584	rs184953495	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	7q31.31		rs184953495-?	NR	1E-26		0.400753	[0.33-0.48] unit decrease	Affymetrix [20259828] (imputed)	N
1507	chr7	120934583	120934584	rs184953495	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	7q31.31	CPED1	rs184953495-C	0.998132	3E-9	(women)	0.466506	[0.31-0.63] unit decrease	NR [17166351] (imputed)	N
1507	chr7	120934583	120934584	rs184953495	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	7q31.31	CPED1	rs184953495-C	0.998068	3E-13		0.417291	[0.31-0.53] unit decrease	NR [17166351] (imputed)	N
1507	chr7	120934583	120934584	rs184953495	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	7q31.31	CPED1	rs184953495-C	0.997994	2E-6	(men)	0.406977	[0.24-0.57] unit decrease	NR [17166351] (imputed)	N
1507	chr7	120935194	120935194	rs147514708	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	7q31.31		rs147514708-?	NR	1E-300		0.158009	[0.15-0.16] unit decrease	Affymetrix [20259828] (imputed)	N
1507	chr7	120942042	120942043	rs73717494	29855537	Hirata T	2018-05-31	Sci Rep	Japanese GWAS identifies variants for bust-size, dysmenorrhea, and menstrual fever that are eQTLs for relevant protein-coding or long non-coding RNAs.	Vaginal discharge (metrorrhagia)	406 Japanese ancestry female cases, 5,328 Japanese ancestry female controls	302 Japanese ancestry female cases, 5,312 Japanese ancestry female controls	7q31.31	NR	rs73717494-A	0.201534104	7E-7		0.3156067	[0.19-0.44] unit increase	Affymetrix [536506]	N
1507	chr7	120946753	120946754	rs6980043	30172743	Liang X	2018-08-30	Bone	Assessing the genetic correlations between early growth parameters and bone mineral density: A polygenic risk score analysis.	Ulna and radius bone mineral density	2,286 European ancestry individuals	NA	7q31.31	WNT16	rs6980043-?	NR	3E-15				Affymetrix [753382]	N
1507	chr7	120946753	120946754	rs6980043	30172743	Liang X	2018-08-30	Bone	Assessing the genetic correlations between early growth parameters and bone mineral density: A polygenic risk score analysis.	Total body bone mineral density	2,286 European ancestry individuals	NA	7q31.31	WNT16	rs6980043-?	NR	2E-6				Affymetrix [753382]	N
1507	chr7	120948033	120948034	rs188137993	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	7q31.31	CPED1	rs188137993-C	0.997116	1E-13		0.1259	[0.093-0.159] unit decrease	NR [13737936] (imputed)	N
1507	chr7	120948845	120948846	rs568261561	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	7q31.31		rs568261561-?	NR	1E-46		0.22718	[0.2-0.26] unit decrease	Affymetrix [20259828] (imputed)	N
1507	chr7	120953755	120953756	rs76042375	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	7q31.31		rs76042375-?	NR	9E-185				NR [~ 8900000] (imputed)	N
1507	chr7	120954907	120954908	rs2707518	33097703	Surakka I	2020-10-23	Nat Commun	MEPE loss-of-function variant associates with decreased bone mineral density and increased fracture risk.	Ultradistal forearm bone mineral density	21,907 European ancestry individuals	NA	7q31.31	NR	rs2707518-T	0.633026659488678	2E-60		0.18181981	[0.16-0.2] SD units decrease	Illumina [11603265] (imputed)	N
1507	chr7	120954907	120954908	rs2707518	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	7q31.31	NR	rs2707518-?	NR	1E-8	(white matter)			NR [9227495] (imputed)	N
1507	chr7	120954907	120954908	rs2707518	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	7q31.31	WNT16	rs2707518-G	0.609544	1E-280		0.110586	[0.11-0.12] unit decrease	NR [13737936] (imputed)	N
1507	chr7	120954907	120954908	rs2707518	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	7q31.31		rs2707518-?	NR	1E-300		0.179756	[0.18-0.18] unit decrease	Affymetrix [20259828] (imputed)	N
1507	chr7	120956439	120956440	rs10254825	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Heel bone mineral density variance	197,261 European ancestry individuals	NA	7q31.31	WNT16	rs10254825-?	NR	2E-45				NR [5554549] (imputed)	N
1507	chr7	120956439	120956440	rs10254825	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Heel bone mineral density	197,261 European ancestry individuals	NA	7q31.31	WNT16	rs10254825-?	NR	1E-300				NR [5554549] (imputed)	N
1507	chr7	120959154	120959155	rs2536195	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	7q31.31		rs2536195-?	NR	1E-300		0.182655	[0.18-0.19] unit decrease	Affymetrix [20259828] (imputed)	N
1507	chr7	120959154	120959155	rs2536195	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	7q31.31	WNT16	rs2536195-A	0.603575	4E-253	(men)	0.173936	[0.16-0.18] unit decrease	NR [17166351] (imputed)	N
1507	chr7	120959154	120959155	rs2536195	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	7q31.31	WNT16	rs2536195-A	0.60309	1E-294	(women)	0.167784	[0.16-0.18] unit decrease	NR [17166351] (imputed)	N
1507	chr7	120959154	120959155	rs2536195	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	7q31.31	WNT16	rs2536195-A	0.40	5E-324		0.17	[0.16-0.18] unit decrease	NR [17166351] (imputed)	N
1507	chr7	120960351	120960352	rs112187554	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	7q31.31	WNT16	rs112187554-A	0.992858	7E-25		0.112682	[0.091-0.134] unit decrease	NR [13737936] (imputed)	N
1507	chr7	120962163	120962164	rs2908007	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Fractures	53,184 British ancestry cases, 373,611 British ancestry controls	367,900 European ancestry cases, 363,919 European ancestry controls	7q31.31	WNT16	rs2908007-A	0.5961	2E-92		0.0625	[0.056-0.069] unit increase	NR [13977204] (imputed)	N
1507	chr7	120962163	120962164	rs2908007	30158200	Trajanoska K	2018-08-29	BMJ	Assessment of the genetic and clinical determinants of fracture risk: genome wide association and mendelian randomisation study.	Fractures	37,857 European or East Asian cases, 227,116 European or East Asian controls	147,200 European ancestry cases, 150,085 European ancestry controls	7q31.31	WNT16, CPED1	rs2908007-A	0.6	2E-39		1.06	[1.05-1.07]	Affymetrix, Illumina [2539801] (imputed)	N
1507	chr7	120962163	120962164	rs2908007	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	7q31.31	WNT16	rs2908007-?	NR	7E-1700				Affymetrix [20259828] (imputed)	N
1507	chr7	120962163	120962164	rs2908007	28472463	Mullin BH	2017-05-04	Hum Mol Genet	Genome-wide association study meta-analysis for quantitative ultrasound parameters of bone identifies five novel loci for broadband ultrasound attenuation.	Bone ultrasound measurement (velocity of sound)	1,268 whole genome sequenced European ancestry women, 8,880 European ancestry women, 6,479 European ancestry men	NA	7q31.31	WNT16	rs2908007-G	0.4	2E-48		0.17	[0.15-0.19] unit increase	Illumina [11973598] (imputed)	N
1507	chr7	120962163	120962164	rs2908007	28472463	Mullin BH	2017-05-04	Hum Mol Genet	Genome-wide association study meta-analysis for quantitative ultrasound parameters of bone identifies five novel loci for broadband ultrasound attenuation.	Bone ultrasound measurement (velocity of sound)	1,268 whole genome sequenced European ancestry women, 8,880 European ancestry women, 6,479 European ancestry men	NA	7q31.31	WNT16	rs2908007-G	0.39	2E-29	(female)	0.17	[0.15-0.19] unit increase	Illumina [11973598] (imputed)	N
1507	chr7	120962163	120962164	rs2908007	28472463	Mullin BH	2017-05-04	Hum Mol Genet	Genome-wide association study meta-analysis for quantitative ultrasound parameters of bone identifies five novel loci for broadband ultrasound attenuation.	Bone ultrasound measurement (broadband ultrasound attenuation)	1,268 whole genome sequenced European ancestry women, 8,880 European ancestry women, 6,479 European ancestry men	NA	7q31.31	WNT16	rs2908007-G	0.4	4E-27	(male)	0.2	[0.16-0.24] unit increase	Illumina [11973598] (imputed)	N
1507	chr7	120962163	120962164	rs2908007	28472463	Mullin BH	2017-05-04	Hum Mol Genet	Genome-wide association study meta-analysis for quantitative ultrasound parameters of bone identifies five novel loci for broadband ultrasound attenuation.	Bone ultrasound measurement (broadband ultrasound attenuation)	1,268 whole genome sequenced European ancestry women, 8,880 European ancestry women, 6,479 European ancestry men	NA	7q31.31	WNT16	rs2908007-G	0.4	1E-51		0.17	[0.15-0.19] unit increase	Illumina [11973598] (imputed)	N
1507	chr7	120962163	120962164	rs2908007	28472463	Mullin BH	2017-05-04	Hum Mol Genet	Genome-wide association study meta-analysis for quantitative ultrasound parameters of bone identifies five novel loci for broadband ultrasound attenuation.	Bone ultrasound measurement (broadband ultrasound attenuation)	1,268 whole genome sequenced European ancestry women, 8,880 European ancestry women, 6,479 European ancestry men	NA	7q31.31	WNT16	rs2908007-G	0.39	1E-27	(female)	0.16	[0.14-0.18] unit increase	Illumina [11973598] (imputed)	N
1507	chr7	120962163	120962164	rs2908007	24430505	Moayyeri A	2014-01-14	Hum Mol Genet	Genetic determinants of heel bone properties: genome-wide association meta-analysis and replication in the GEFOS/GENOMOS consortium.	Bone properties (heel)	730 East Asian ancestry individuals, 2,380 European ancestry individuals, 11,150 individuals	11,058 European ancestry individuals, 2,870 European and other ancestry individuals, 21,439 individuals	7q31.31	WNT16	rs2908007-G	0.40	4E-35	(BUA)	0.14	[0.12-0.16] unit increase	Affymetrix, Illumina [up to 2609590] (imputed)	N
1507	chr7	120962163	120962164	rs2908007	24430505	Moayyeri A	2014-01-14	Hum Mol Genet	Genetic determinants of heel bone properties: genome-wide association meta-analysis and replication in the GEFOS/GENOMOS consortium.	Bone properties (heel)	4,556 European ancestry individuals	2,236 European ancestry individuals	7q31.31	WNT16	rs2908007-G	0.37	1E-9	(BMD-DXA)	0.14	[0.09-0.18] unit increase	Affymetrix, Illumina [up to 2399195] (imputed)	N
1507	chr7	120962163	120962164	rs2908007	24430505	Moayyeri A	2014-01-14	Hum Mol Genet	Genetic determinants of heel bone properties: genome-wide association meta-analysis and replication in the GEFOS/GENOMOS consortium.	Bone properties (heel)	2,483 East Asian ancestry individuals, 1,885 European ancestry individuals, 11,146 individuals	10,074 European ancestry individuals, 2,870 European and other ancestry individuals, 21,434 individuals	7q31.31	WNT16	rs2908007-G	0.41	2E-59	(VOS)	0.15	[0.13-0.17] unit increase	Affymetrix, Illumina [up to 2609590] (imputed)	N
1507	chr7	120965464	120965464	rs10668066	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	7q31.31		rs10668066-?	NR	1E-300		0.188754	[0.18-0.19] unit decrease	Affymetrix [20259828] (imputed)	N
1507	chr7	120965464	120965464	rs10668066	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	7q31.31	WNT16	rs10668066-G	0.75415	2E-252	(women)	0.174632	[0.16-0.19] unit decrease	NR [17166351] (imputed)	N
1507	chr7	120965464	120965464	rs10668066	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	7q31.31	WNT16	rs10668066-G	0.753135	2E-204	(men)	0.177438	[0.17-0.19] unit decrease	NR [17166351] (imputed)	N
1507	chr7	120965464	120965464	rs10668066	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	7q31.31	WNT16	rs10668066-G	0.25	5E-324		0.17	[0.16-0.18] unit decrease	NR [17166351] (imputed)	N
1507	chr7	120966789	120966790	rs3779381	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Osteoporosis	8,520 European ancestry cases, 479,981 European ancestry controls, 9,794 East Asian ancestry cases, 168,932 East Asian ancestry controls	NA	7q31.31		rs3779381-G	NR	5E-15		0.1162	[0.087-0.145] unit decrease	Affymetrix, Illumina [25844994] (imputed)	N
1507	chr7	120966789	120966790	rs3779381	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs affecting bone structure and mineralization)	7,870 European ancestry cases, 207,798 European ancestry controls, 6,143 East Asian ancestry cases, 172,583 East Asian ancestry controls	NA	7q31.31		rs3779381-G	NR	5E-11		0.1024	[0.072-0.133] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1507	chr7	120966789	120966790	rs3779381	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (drugs affecting bone structure and mineralization)	7,870 European ancestry cases, 207,798 European ancestry controls	NA	7q31.31	WNT16	rs3779381-G	0.258819	5E-10		0.11386992	[0.078-0.15] unit decrease	Affymetrix [7288503] (imputed)	N
1507	chr7	120966789	120966790	rs3779381	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	7q31.31	WNT16	rs3779381-A	0.74094	4E-143		0.0793046	[0.073-0.085] unit decrease	NR [13737936] (imputed)	N
1507	chr7	120966789	120966790	rs3779381	30251476	Lopez-Mejias R	2018-09-24	Arthritis Rheumatol	A genome-wide association study identifies a 3'UTR genetic variant of RARB associated with carotid intima-media thickness in rheumatoid arthritis.	Ischemic heart disease in rheumatoid arthritis	224 Spanish ancestry patients, 2,765 Spanish ancestry controls	NA	7q31.31	WNT16	rs3779381-G	0.283	2E-7		1.77	[1.23-2.19]	Illumina [63089444] (imputed)	N
1507	chr7	120966789	120966790	rs3779381	29499414	Pei YF	2018-02-27	Bone	Joint study of two genome-wide association meta-analyses identified 20p12.1 and 20q13.33 for bone mineral density.	Lumbar spine bone mineral density	up to 4,692 European ancestry individuals, up to 1,539 Han Chinese ancestry individuals, up to 849 African American individuals, up to 446 Hispanic individuals, 2,882 European ancestry whole-genome sequenced individuals, 3,549 European ancestry whole-exome sequenced individuals, 26,534 European ancestry non-array genotype imputed individuals	NA	7q31.31	WNT16	rs3779381-A	0.742765	1E-18		0.0782	[0.061-0.096] unit decrease	Affymetrix, Illumina [7998108] (imputed)	N
1507	chr7	120966789	120966790	rs3779381	29499414	Pei YF	2018-02-27	Bone	Joint study of two genome-wide association meta-analyses identified 20p12.1 and 20q13.33 for bone mineral density.	Femoral neck bone mineral density	up to 4,692 European ancestry individuals, up to 1,539 Han Chinese ancestry individuals, up to 849 African American individuals, up to 446 Hispanic individuals, 2,882 European ancestry whole-genome sequenced individuals, 3,549 European ancestry whole-exome sequenced individuals, 26,534 European ancestry non-array genotype imputed individuals	NA	7q31.31	WNT16	rs3779381-A	0.742765	1E-14		0.0605	[0.045-0.076] unit decrease	Affymetrix, Illumina [7998108] (imputed)	N
1507	chr7	120966789	120966790	rs3779381	28472463	Mullin BH	2017-05-04	Hum Mol Genet	Genome-wide association study meta-analysis for quantitative ultrasound parameters of bone identifies five novel loci for broadband ultrasound attenuation.	Bone ultrasound measurement (velocity of sound)	1,268 whole genome sequenced European ancestry women, 8,880 European ancestry women, 6,479 European ancestry men	NA	7q31.31	WNT16	rs3779381-G	0.25	1E-21	(male)	0.19	[0.15-0.23] unit increase	Illumina [11973598] (imputed)	N
1507	chr7	120969768	120969769	rs2908004	24945404	Kemp JP	2014-06-19	PLoS Genet	Phenotypic dissection of bone mineral density reveals skeletal site specificity and facilitates the identification of novel loci in the genetic regulation of bone mass attainment.	Bone mineral density (paediatric, lower limb)	8,007 European ancestry children, 289 Surinamese ancestry children, 300 Turkish ancestry children, 232 Moroccan ancestry children, 588 children	NA	7q31.31	FAM3C, WNT16, CPED1	rs2908004-A	NR	1E-9	(EA)	0.1039	[0.07-0.138] unit increase	Illumina [~ 2500000] (imputed)	N
1507	chr7	120969768	120969769	rs2908004	24945404	Kemp JP	2014-06-19	PLoS Genet	Phenotypic dissection of bone mineral density reveals skeletal site specificity and facilitates the identification of novel loci in the genetic regulation of bone mass attainment.	Bone mineral density (paediatric, lower limb)	8,007 European ancestry children, 289 Surinamese ancestry children, 300 Turkish ancestry children, 232 Moroccan ancestry children, 588 children	NA	7q31.31	FAM3C, WNT16, CPED1	rs2908004-A	0.47	3E-11		0.1	[0.071-0.129] unit increase	Illumina [~ 2500000] (imputed)	N
1507	chr7	120969768	120969769	rs2908004	22792071	Zheng HF	2012-07-05	PLoS Genet	WNT16 influences bone mineral density, cortical bone thickness, bone strength, and osteoporotic fracture risk.	Bone mineral density	5,672 European ancestry individuals	NA	7q31.31	WNT16	rs2908004-G	0.58	1E-15		0.16	[NR] mg/cm3 decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1507	chr7	120969969	120969969	rs142005327	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	7q31.31	NR	rs142005327-?	NR	3E-11	(white matter)			NR [9227495] (imputed)	N
1507	chr7	120970752	120970753	rs73440215	33097703	Surakka I	2020-10-23	Nat Commun	MEPE loss-of-function variant associates with decreased bone mineral density and increased fracture risk.	Ultradistal forearm bone mineral density	21,907 European ancestry individuals	NA	7q31.31	NR	rs73440215-?	0.98659449443221	1E-6		0.22594792	[0.13-0.32] SD units decrease	Illumina [11603265] (imputed)	N
1507	chr7	120970752	120970753	rs73440215	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	7q31.31		rs73440215-?	NR	7E-50		0.14947	[0.13-0.17] unit decrease	Affymetrix [20259828] (imputed)	N
1507	chr7	120973620	120973621	rs2536189	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	7q31.31		rs2536189-?	NR	4E-10				NR [~ 8900000] (imputed)	N
1507	chr7	120974764	120974765	rs3801387	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density (age over 60)	22,504 European ancestry and African American individuals	NA	7q31.31	NR	rs3801387-A	0.7266	3E-35		0.1337	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
1507	chr7	120974764	120974765	rs3801387	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density (age 45-60)	18,805 European individuals	NA	7q31.31	NR	rs3801387-A	0.7348	3E-30		0.1359	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
1507	chr7	120974764	120974765	rs3801387	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	7q31.31	NR	rs3801387-A	0.7337	3E-87	(European)	0.1377	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
1507	chr7	120974764	120974765	rs3801387	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	7q31.31	NR	rs3801387-A	0.7279	1E-100		0.1347	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
1507	chr7	120974764	120974765	rs3801387	22504420	Estrada K	2012-04-15	Nat Genet	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Lumbar spine bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	7q31.31	WNT16	rs3801387-A	0.74	3E-51		0.09	[NR] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1507	chr7	120979088	120979089	rs2707466	22792071	Zheng HF	2012-07-05	PLoS Genet	WNT16 influences bone mineral density, cortical bone thickness, bone strength, and osteoporotic fracture risk.	Cortical thickness	5,878 European ancestry individuals	1,032 European ancestry individuals	7q31.31	WNT16	rs2707466-C	NR	2E-10		0.11	[0.071-0.149] mm decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1508	chr7	120983342	120983343	rs10242100	33893285	Guindo-Martinez M	2021-04-23	Nat Commun	The impact of non-additive genetic associations on age-related complex diseases.	Osteoporosis	5,399 European ancestry cases, 51,238 European ancestry controls	NA	7q31.31		rs10242100-G	0.2765019	3E-8		0.87		Affymetrix [15544346] (imputed)	N
1508	chr7	120983342	120983343	rs10242100	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density (age 30-45)	10,062 European and unknown ancestry individuals	NA	7q31.31	NR	rs10242100-A	0.7296	8E-23		0.1614	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
1508	chr7	120983342	120983343	rs10242100	24249740	Zhang L	2013-11-17	Hum Mol Genet	Multistage genome-wide association meta-analyses identified two new loci for bone mineral density.	Bone mineral density	5,833 European ancestry females, 2,639 European ancestry males, 784 Han Chinese ancestry females, 763 Han Chinese ancestry males, 712 African American females, 409 Hispanic females	7,010 European ancestry females, 3,772 European ancestry males, 2,980 East Asian ancestry females, 2,159 East Asian ancestry males	7q31.31	WNT16	rs10242100-?	NR	2E-10	(hip)			Affymetrix, Illumina [5842825] (imputed)	N
1508	chr7	120983852	120983853	rs185403618	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	7q31.31		rs185403618-?	NR	2E-19		0.20019	[0.16-0.24] unit decrease	Affymetrix [20259828] (imputed)	N
1508	chr7	120984040	120984041	rs2536185	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	7q31.31	NR	rs2536185-T	0.4485	5E-12				NR [9056863] (imputed)	N
1508	chr7	120990119	120990120	rs15427	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	7q31.31		rs15427-?	NR	2E-134		0.100729	[0.093-0.109] unit increase	Affymetrix [20259828] (imputed)	N
1508	chr7	120997559	120997560	rs2536172	30779856	Lu HF	2019-02-19	J Bone Miner Res	A meta-analysis of genome-wide association studies identifies three loci associated with stiffness index of the calcaneus.	Calcaneus stiffness index	7,742 Taiwanese ancestry individuals	2,955 Korean ancestry individuals	7q31.31	FAM3C	rs2536172-?	0.4085	3E-13		0.1165	[0.085-0.148] unit increase	Affymetrix [~ 6100000] (imputed)	N
1508	chr7	121000717	121000718	rs7807953	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	7q31.31		rs7807953-T	0.26	2E-13		7.36	z score increase	Affymetrix [9061022] (imputed)	N
1508	chr7	121002538	121002539	rs568396270	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	7q31.31	FAM3C	rs568396270-C	0.999626	2E-12		0.193853	[0.14-0.25] unit decrease	NR [13737936] (imputed)	N
1508	chr7	121002701	121002702	rs74400620	31455332	Zhang Y	2019-08-28	BMC Med	Dissecting genetic factors affecting phenylephrine infusion rates during anesthesia: a genome-wide association study employing EHR data.	Phenylephrine infusion rate during anesthesia	1,534 European ancestry individuals	NA	7q31.31	FAM3C, WNT16, CYCSP19	rs74400620-A	0.01364	3E-6		13.98	[8.13-19.8] unit increase	Illumina [up to 4929806] (imputed)	N
1508	chr7	121018578	121018579	rs917727	28743860	Medina-Gomez C	2017-07-25	Nat Commun	Bivariate genome-wide association meta-analysis of pediatric musculoskeletal traits reveals pleiotropic effects at the SREBF1/TOM1L2 locus.	TB-LM or TBLH-BMD (pleiotropy)	8,327 European ancestry individuals, 2,087 individuals	NA	7q31.31	WNT16, CPED1	rs917727-T	0.29	3E-20				Illumina [2276811] (imputed)	N
1508	chr7	121018578	121018579	rs917727	28743860	Medina-Gomez C	2017-07-25	Nat Commun	Bivariate genome-wide association meta-analysis of pediatric musculoskeletal traits reveals pleiotropic effects at the SREBF1/TOM1L2 locus.	Bone mineral density (paediatric, total body less head)	8,327 European ancestry individuals, 2,087 individuals	NA	7q31.31	WNT16, CPED1	rs917727-T	0.29	5E-17		0.1289	[NR] unit increase	Illumina [2276811] (imputed)	N
1508	chr7	121018578	121018579	rs917727	22792070	Medina-Gomez C	2012-07-05	PLoS Genet	Meta-analysis of genome-wide scans for total body BMD in children and adults reveals allelic heterogeneity and age-specific effects at the WNT16 locus.	Bone mineral density	1,834 European ancestry children, 825 children	11,052 European ancestry individuals	7q31.31	WNT16	rs917727-T	0.273	1E-27		0.154	[NR] unit increase	Illumina [3021329] (imputed)	N
1508	chr7	121018856	121018857	rs917726	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density (age 0-15)	11,807 European and unknown ancestry individuals	NA	7q31.31	NR	rs917726-A	0.7269	5E-21		0.137	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
1508	chr7	121022619	121022621	rs58981560	32963334	Wei XT	2020-09-22	Eur J Hum Genet	Pleiotropic genomic variants at 17q21.31 associated with bone mineral density and body fat mass: a bivariate genome-wide association analysis.	Bone mineral density (hip)	10,070 European ancestry individuals, 1,623 Han Chinese ancestry individuals, 843 African American individuals, 445 Hispanic individuals	NA	7q31.31	NR	rs58981560-?		2E-8		0.07	[0.05-0.09] unit decrease	Affymetrix, Illumina [2374420] (imputed)	N
1508	chr7	121025085	121025086	rs188714751	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	7q31.31		rs188714751-?	NR	5E-38		0.130862	[0.11-0.15] unit decrease	Affymetrix [20259828] (imputed)	N
1508	chr7	121025501	121025502	rs718766	30172743	Liang X	2018-08-30	Bone	Assessing the genetic correlations between early growth parameters and bone mineral density: A polygenic risk score analysis.	Ulna and radius bone mineral density	2,286 European ancestry individuals	NA	7q31.31	FAM3C	rs718766-?	NR	2E-10				Affymetrix [753382]	N
1508	chr7	121031878	121031879	rs4727924	33430342	Younes N	2021-01-07	J Pers Med	A Whole-Genome Sequencing Association Study of Low Bone Mineral Density Identifies New Susceptibility Loci in the Phase I Qatar Biobank Cohort.	Total body bone mineral density	3,000 Qatari ancestry individuals	NA	7q31.31		rs4727924-T	NR	2E-11				Illumina [1084750]	N
1508	chr7	121031878	121031879	rs4727924	33430342	Younes N	2021-01-07	J Pers Med	A Whole-Genome Sequencing Association Study of Low Bone Mineral Density Identifies New Susceptibility Loci in the Phase I Qatar Biobank Cohort.	Bone mineral density (trunk)	3,000 Qatari ancestry individuals	NA	7q31.31		rs4727924-?	NR	2E-8				Illumina [1084750]	N
1508	chr7	121031878	121031879	rs4727924	33430342	Younes N	2021-01-07	J Pers Med	A Whole-Genome Sequencing Association Study of Low Bone Mineral Density Identifies New Susceptibility Loci in the Phase I Qatar Biobank Cohort.	Bone mineral density (spine)	3,000 Qatari ancestry individuals	NA	7q31.31		rs4727924-?	NR	2E-8				Illumina [1084750]	N
1508	chr7	121033120	121033121	rs7776725	30172743	Liang X	2018-08-30	Bone	Assessing the genetic correlations between early growth parameters and bone mineral density: A polygenic risk score analysis.	Total body bone mineral density	2,286 European ancestry individuals	NA	7q31.31	FAM3C	rs7776725-?	NR	2E-6				Affymetrix [753382]	N
1508	chr7	121033120	121033121	rs7776725	27424934	Choi HJ	2016-07-15	Bone	Genome-wide association study in East Asians suggests UHMK1 as a novel bone mineral density susceptibility gene.	Bone mineral density (total hip)	2,729 Korean ancestry individuals	1,547 Chinese Han ancestry individuals, 3,237 European ancestry individuals	7q31.31	WNT16	rs7776725-C	0.13	9E-9		0.12	unit increase	Affymetrix [328918]	N
1508	chr7	121033120	121033121	rs7776725	27424934	Choi HJ	2016-07-15	Bone	Genome-wide association study in East Asians suggests UHMK1 as a novel bone mineral density susceptibility gene.	Bone mineral density (total hip)	2,729 Korean ancestry individuals	1,547 Chinese Han ancestry individuals, 3,237 European ancestry individuals	7q31.31	WNT16	rs7776725-C	0.13	4E-8	(females)	0.15	unit increase	Affymetrix [328918]	N
1508	chr7	121033120	121033121	rs7776725	27424934	Choi HJ	2016-07-15	Bone	Genome-wide association study in East Asians suggests UHMK1 as a novel bone mineral density susceptibility gene.	Bone mineral density (femoral neck)	2,729 Korean ancestry individuals	1,547 Han Chinese ancestry individuals, 3,237 European ancestry individuals	7q31.31	WNT16	rs7776725-C	0.13	6E-7	(females)	0.13	unit increase	Affymetrix [328918]	N
1508	chr7	121033120	121033121	rs7776725	27424934	Choi HJ	2016-07-15	Bone	Genome-wide association study in East Asians suggests UHMK1 as a novel bone mineral density susceptibility gene.	Bone mineral density (femoral neck)	2,729 Korean ancestry individuals	1,547 Han Chinese ancestry individuals, 3,237 European ancestry individuals	7q31.31	WNT16	rs7776725-C	0.13	1E-6		0.1	unit increase	Affymetrix [328918]	N
1508	chr7	121033120	121033121	rs7776725	26367794	Zheng HF	2015-10-01	Nature	Whole-genome sequencing identifies EN1 as a determinant of bone density and fracture.	Forearm bone mineral density	6,627 European ancestry individuals, 1,221 whole genome sequenced European ancestry individuals, 295 whole exome sequenced European ancestry individuals,	2,662 European ancestry individuals	7q31.31	WNT16, FAM3C	rs7776725-C	0.285	1E-25		0.186	[0.15-0.22] unit increase	Illumina [at least 14018627] (imputed)	N
1508	chr7	121033120	121033121	rs7776725	24945404	Kemp JP	2014-06-19	PLoS Genet	Phenotypic dissection of bone mineral density reveals skeletal site specificity and facilitates the identification of novel loci in the genetic regulation of bone mass attainment.	Bone mineral density (paediatric, total body less head)	8,007 European ancestry children, 289 Surinamese ancestry children, 300 Turkish ancestry children, 232 Moroccan ancestry children, 588 children	NA	7q31.31	FAM3C, WNT16, CPED1	rs7776725-C	NR	2E-15	(EA)	0.1582	[0.12-0.2] unit increase	Illumina [~ 2500000] (imputed)	N
1508	chr7	121033120	121033121	rs7776725	24945404	Kemp JP	2014-06-19	PLoS Genet	Phenotypic dissection of bone mineral density reveals skeletal site specificity and facilitates the identification of novel loci in the genetic regulation of bone mass attainment.	Bone mineral density (paediatric, total body less head)	8,007 European ancestry children, 289 Surinamese ancestry children, 300 Turkish ancestry children, 232 Moroccan ancestry children, 588 children	NA	7q31.31	FAM3C, WNT16, CPED1	rs7776725-C	0.27	6E-20		0.159	[0.13-0.19] unit increase	Illumina [~ 2500000] (imputed)	N
1508	chr7	121033120	121033121	rs7776725	19396169	Cho YS	2009-04-26	Nat Genet	A large-scale genome-wide association study of Asian populations uncovers genetic factors influencing eight quantitative traits.	Biomedical quantitative traits	8,842 Korean ancestry individuals	7,861 Korean ancestry individuals	7q31.31	FAM3C	rs7776725-C	0.13	2E-6	(BD-TT)			Affymetrix [2156535] (imputed)	N
1508	chr7	121033120	121033121	rs7776725	19396169	Cho YS	2009-04-26	Nat Genet	A large-scale genome-wide association study of Asian populations uncovers genetic factors influencing eight quantitative traits.	Biomedical quantitative traits	8,842 Korean ancestry individuals	7,861 Korean ancestry individuals	7q31.31	FAM3C	rs7776725-C	0.13	1E-11	(BD-RT)			Affymetrix [2156535] (imputed)	N
1508	chr7	121033357	121033358	rs189468016	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	7q31.31		rs189468016-?	NR	2E-24		0.223991	[0.18-0.27] unit decrease	Affymetrix [20259828] (imputed)	N
1508	chr7	121035288	121035306	rs758648676	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	7q31.31		rs758648676-?	NR	2E-12		0.0814	[0.056-0.107] unit decrease	Affymetrix [20259828] (imputed)	N
1508	chr7	121036165	121036166	rs138090420	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	7q31.31	FAM3C	rs138090420-T	0.9794	2E-20		0.0511514	[0.04-0.062] unit decrease	NR [13737936] (imputed)	N
1508	chr7	121036165	121036166	rs138090420	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	7q31.31		rs138090420-?	NR	5E-164		0.15916	[0.15-0.17] unit decrease	Affymetrix [20259828] (imputed)	N
1508	chr7	121041743	121041744	rs747189731	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	7q31.32		rs747189731-?	NR	2E-69		0.104345	[0.092-0.117] unit decrease	Affymetrix [20259828] (imputed)	N
1508	chr7	121046143	121046144	rs187925403	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	7q31.32		rs187925403-?	NR	2E-9		0.179249	[0.12-0.23] unit decrease	Affymetrix [20259828] (imputed)	N
1508	chr7	121046143	121046144	rs187925403	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	7q31.32	FAM3C	rs187925403-A	0.997055	5E-9	(women)	0.380837	[0.25-0.51] unit decrease	NR [17166351] (imputed)	N
1508	chr7	121046143	121046144	rs187925403	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	7q31.32	FAM3C	rs187925403-A	0.997047	1E-12		0.336523	[0.24-0.43] unit decrease	NR [17166351] (imputed)	N
1508	chr7	121050306	121050307	rs12112607	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	7q31.32	FAM3C	rs12112607-A	0.99947	8E-12		0.23806	[0.17-0.31] unit decrease	NR [13737936] (imputed)	N
1508	chr7	121051047	121051048	rs6962549	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	7q31.32	NR	rs6962549-?	NR	7E-8				Affymetrix [NR]	N
1508	chr7	121053439	121053440	rs62475038	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	7q31.32	NR	rs62475038-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
1508	chr7	121054477	121054478	rs6974427	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7q31.32	NR	rs6974427-C	0.0453	2E-8	(GGH)	0.05147	NR unit increase	Illumina [1671387] (imputed)	N
1508	chr7	121083967	121083968	rs116171174	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	7q31.32		rs116171174-?	NR	4E-50		0.0805644	[0.07-0.091] unit decrease	Affymetrix [20259828] (imputed)	N
1508	chr7	121090858	121090859	rs1534520	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	7q31.32	RP11-3L10.3	rs1534520-T	NR	3E-8		0.0196225	[0.013-0.027] unit decrease	Affymetrix [323858] (imputed)	N
1508	chr7	121090858	121090859	rs1534520	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	7q31.32	RP11-3L10.3	rs1534520-T	NR	3E-8		0.0197552	[0.013-0.027] unit decrease	Affymetrix [127266] (imputed)	N
1508	chr7	121094910	121094911	rs188967368	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	7q31.32		rs188967368-?	NR	7E-61				NR [~ 8900000] (imputed)	N
1509	chr7	121139759	121139760	rs1819054	27325353	Matteini AM	2016-06-21	Aging Cell	GWAS analysis of handgrip and lower body strength in older adults in the CHARGE consortium.	Hand grip strength	27,581 European ancestry individuals	6,393 individuals	7q31.32	PTPRZ1, FAM3C	rs1819054-G	0.4	6E-7		0.25	[0.15-0.35] kg increase	Affymetrix, Illumina [2725778] (imputed)	N
1509	chr7	121147146	121147147	rs117042944	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7q31.32	NR	rs117042944-T	0.0331	1E-8	(CIITA)	0.2889	NR unit increase	Illumina [1671387] (imputed)	N
1509	chr7	121191250	121191251	rs73719807	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	7q31.32	NR	rs73719807-A	0.9129	1E-16		0.0925	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
1509	chr7	121195150	121195151	rs2107801	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	7q31.32	FAM3C	rs2107801-T	0.585212	2E-12		0.0131241	[0.0095-0.0168] unit decrease	NR [13737936] (imputed)	N
1509	chr7	121200843	121200844	rs73719811	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	7q31.32	NR	rs73719811-T	0.9322	3E-13	(European)	0.0944	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
1509	chr7	121204432	121204433	rs112791731	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric bone mineral content (femoral neck)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	7q31.32	CPED1	rs112791731-C	0.33	2E-8		0.21514	[0.14-0.29] unit decrease	Illumina [~ 6600000] (imputed)	N
1510	chr7	121253006	121253007	rs55941320	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	7q31.32		rs55941320-?	NR	3E-19				NR [~ 8900000] (imputed)	N
1510	chr7	121258370	121258371	rs28581422	25987507	Minica CC	2015-05-19	Behav Genet	Heritability, SNP- and Gene-Based Analyses of Cannabis Use Initiation and Age at Onset.	Cannabis use (initiation)	1,357 European ancestry users, 5,387 European ancestry never users	NA	7q31.32	NR	rs28581422-C	NR	9E-6		0.65	[0.36-0.94] unit decrease	NR [5896100] (imputed)	N
1510	chr7	121275228	121275229	rs10253361	21529783	Heath AC	2011-04-27	Biol Psychiatry	A quantitative-trait genome-wide association study of alcoholism risk in the community: findings and implications.	Alcoholism (alcohol dependence factor score)	2,062 European ancestry alcohol dependence cases, 6,692 European ancestry controls	3,393 European ancestry individuals	7q31.32	intergenic	rs10253361-T	0.38	6E-6		0.076	[NR] unit decrease	Illumina [~ 300000]	N
1511	chr7	121389858	121389859	rs149472274	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	7q31.32		rs149472274-?	NR	8E-23				NR [~ 8900000] (imputed)	N
1511	chr7	121419129	121419130	rs147560684	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung adenocarcinoma	11,273 European ancestry cases,  55,483 European ancestry controls	NA	7q31.32	FAM3C, PTPRZ1	rs147560684-G	0.93914972	3E-6		1.245668	[1.14-1.37]	Illumina [10439017] (imputed)	N
1511	chr7	121441979	121441980	rs10488055	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	7q31.32		rs10488055-?	NR	4E-16		0.0180362	[0.014-0.022] unit decrease	Affymetrix [20259828] (imputed)	N
1511	chr7	121472884	121472885	rs10264053	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	7q31.32	PTPRZ1	rs10264053-G	0.685991	5E-13		0.0142268	[0.01-0.018] unit decrease	NR [13737936] (imputed)	N
1512	chr7	121504148	121504149	rs77810251	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	HDL cholesterol levels x smoking (ever vs never smokers) interaction (2df test)	11,893 African ancestry ever smoker individuals, 4,025 Asian ancestry ever smoker individuals, 49,475 European ancestry ever smoker individuals, 2,544 Hispanic ever smoker individuals, 11,866 African ancestry never smoker individuals, 9,146 Asian ancestry never smoker individuals, 40,797 European ancestry never smoker individuals, 4,076 Hispanic never smoker individuals	2,827 African ancestry ever smoker individuals, 37,952 Asian ancestry ever smoker individuals, 82,808 European ancestry ever smoker individuals, 7,091 Hispanic ever smoker individuals, 2,785 African ancestry never smoker individuals, 43,565 Asian ancestry never smoker individuals, 64,252 European ancestry never smoker individuals, 10,431 Hispanic never smoker individuals	7q31.32		rs77810251-A	0.04	1E-9	(African)	0.06	[0.036-0.084] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1512	chr7	121504148	121504149	rs77810251	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	HDL cholesterol levels x smoking (ever vs never smokers) interaction (2df test)	11,893 African ancestry ever smoker individuals, 4,025 Asian ancestry ever smoker individuals, 49,475 European ancestry ever smoker individuals, 2,544 Hispanic ever smoker individuals, 11,866 African ancestry never smoker individuals, 9,146 Asian ancestry never smoker individuals, 40,797 European ancestry never smoker individuals, 4,076 Hispanic never smoker individuals	2,827 African ancestry ever smoker individuals, 37,952 Asian ancestry ever smoker individuals, 82,808 European ancestry ever smoker individuals, 7,091 Hispanic ever smoker individuals, 2,785 African ancestry never smoker individuals, 43,565 Asian ancestry never smoker individuals, 64,252 European ancestry never smoker individuals, 10,431 Hispanic never smoker individuals	7q31.32		rs77810251-?	NR	5E-10	(African)	0.06055	[0.037-0.084] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1512	chr7	121504148	121504149	rs77810251	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	HDL cholesterol levels x smoking (ever vs never smokers) interaction (1df test)	11,893 African ancestry ever smoker individuals, 4,025 Asian ancestry ever smoker individuals, 49,475 European ancestry ever smoker individuals, 2,544 Hispanic ever smoker individuals, 11,866 African ancestry never smoker individuals, 9,146 Asian ancestry never smoker individuals, 40,797 European ancestry never smoker individuals, 4,076 Hispanic never smoker individuals	2,827 African ancestry ever smoker individuals, 37,952 Asian ancestry ever smoker individuals, 82,808 European ancestry ever smoker individuals, 7,091 Hispanic ever smoker individuals, 2,785 African ancestry never smoker individuals, 43,565 Asian ancestry never smoker individuals, 64,252 European ancestry never smoker individuals, 10,431 Hispanic never smoker individuals	7q31.32		rs77810251-A	0.04	1E-6	(African)	0.0589	[0.035-0.082] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1512	chr7	121504148	121504149	rs77810251	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	HDL cholesterol levels x smoking (ever vs never smokers) interaction (1df test)	11,893 African ancestry ever smoker individuals, 4,025 Asian ancestry ever smoker individuals, 49,475 European ancestry ever smoker individuals, 2,544 Hispanic ever smoker individuals, 11,866 African ancestry never smoker individuals, 9,146 Asian ancestry never smoker individuals, 40,797 European ancestry never smoker individuals, 4,076 Hispanic never smoker individuals	2,827 African ancestry ever smoker individuals, 37,952 Asian ancestry ever smoker individuals, 82,808 European ancestry ever smoker individuals, 7,091 Hispanic ever smoker individuals, 2,785 African ancestry never smoker individuals, 43,565 Asian ancestry never smoker individuals, 64,252 European ancestry never smoker individuals, 10,431 Hispanic never smoker individuals	7q31.32		rs77810251-?	NR	1E-6	(African)	0.0597	[0.036-0.084] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1512	chr7	121504148	121504149	rs77810251	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	HDL cholesterol levels in never smokers	11,866 African ancestry individuals, 9,146 Asian ancestry individuals, 40,797 European ancestry individuals, 4,076 Hispanic individuals	NA	7q31.32		rs77810251-?	NR	6E-11	(African)	0.0549	[0.038-0.071] unit increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1512	chr7	121567282	121567283	rs13234003	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	7q31.32	NR	rs13234003-?	NR	5E-6		0.0078284	[0.0045-0.0112] unit decrease	Affymetrix [805426] (imputed)	N
1512	chr7	121630382	121630383	rs35258872	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7q31.32		rs35258872-?	NR	5E-11				NR [~ 8900000] (imputed)	N
1512	chr7	121633098	121633099	rs79924303	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	7q31.32		rs79924303-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1513	chr7	121651750	121651751	rs150698072	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Epithelial ovarian cancer	1,112 White British ancestry cases, 147,944 White British ancestry controls	NA	7q31.32		rs150698072-?	NR	4E-8		8.76932	[7.99-9.55]	NR [666300]	N
1514	chr7	121798997	121798998	rs157658	34563919	Chiba Y	2021-09-20	J Neurol Sci	Genetic and demographic predisposing factors associated with pediatric sleepwalking in the Philadelphia Neurodevelopmental Cohort.	Sleepwalking	512 European ancestry cases, 4,250 European ancestry controls	NA	7q31.32		rs157658-?	NR	6E-8		0.6795		Illumina [NR] (imputed)	N
1514	chr7	121807925	121807926	rs73721103	34124712	Sherva R	2021-02-28	Explor Med	Genome-wide association study of phenotypes measuring progression from first cocaine or opioid use to dependence reveals novel risk genes.	Opioid dependence (time to event)	1,307 African American cases, 974 African American controls, 2,340 European ancestry cases, 768 European ancestry controls	144 African American cases, 354 African American controls, up to 1,551 European ancestry cases, up to 1,393 European ancestry controls	7q31.32	AASS, LOC102724527	rs73721103-?	NR	3E-7				Illumina [NR] (imputed)	N
1514	chr7	121807925	121807926	rs73721103	34124712	Sherva R	2021-02-28	Explor Med	Genome-wide association study of phenotypes measuring progression from first cocaine or opioid use to dependence reveals novel risk genes.	Cocaine dependence (time to event)	3,554 African American cases, 478 African American controls, 2,712 European ancestry cases, 915 European ancestry controls	572 African American cases, 416 African American controls, 759 European ancestry cases, 1,620 European ancestry controls	7q31.32	AASS-LOC102724527	rs73721103-T	NR	4E-7		1.3	NR	Illumina [NR] (imputed)	N
1514	chr7	121868675	121868676	rs4731052	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	7q31.32		rs4731052-?	NR	2E-9		0.016264	[0.011-0.021] unit decrease	Affymetrix [20259828] (imputed)	N
1515	chr7	121911012	121911013	rs6946696	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (unclassified genus belonging to family Ruminococcaceae)	1,068 Japanese ancestry individuals	NA	7q31.32	intergenic	rs6946696-C	0.12	9E-6	(female)	0.116	[0.065-0.167] unit decrease	Illumina [6380737] (imputed)	N
1515	chr7	121942673	121942674	rs6968240	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	7q31.32	FEZF1	rs6968240-A	0.4171	3E-10		1.021835		Affymetrix [11880941] (imputed)	N
1515	chr7	121944238	121944239	rs145467198	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	7q31.32		rs145467198-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1515	chr7	121945881	121945882	rs143944199	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		FEZF1	rs143944199-?	NR	4E-8	(female)	1.98936	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1515	chr7	121947455	121947456	rs11767283	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	7q31.32	AS1, FEZF	rs11767283-A	0.778797	3E-14		0.0190961	[0.014-0.024] unit increase	NR [16516521] (imputed)	N
1515	chr7	121947455	121947456	rs11767283	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Pork consumption	335,576 European ancestry individuals	NA	7q31.32	FEZF1	rs11767283-?	NR	8E-12		0.0035179	[-0.00233-0.00936] unit increase	Affymetrix [25921788] (imputed)	N
1515	chr7	121947455	121947456	rs11767283	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Oily fish consumption	335,576 European ancestry individuals	NA	7q31.32	FEZF1	rs11767283-?	NR	8E-12		0.0202923	[0.014-0.026] unit decrease	Affymetrix [25921788] (imputed)	N
1515	chr7	121950964	121950965	rs7779018	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	7q31.32	NR	rs7779018-A	NR	1E-7		1.06	[NR]	Illumina [7158791] (imputed)	N
1515	chr7	121954708	121954709	rs10953957	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	7q31.32		rs10953957-G	0.623	3E-17		0.01	[0.008-0.012] unit decrease	NR [NR] (imputed)	N
1515	chr7	121954708	121954709	rs10953957	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	7q31.32	NR	rs10953957-A	0.386	9E-10		0.00685463	[0.0047-0.009] unit increase	NR [9732723] (imputed)	N
1515	chr7	121954708	121954709	rs10953957	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	7q31.32	NR	rs10953957-A	0.386	4E-8		0.01440579	[0.0093-0.0195] unit increase	NR [~ 10000000] (imputed)	N
1515	chr7	121955327	121955328	rs3958046	32279069	Rovira P	2020-04-12	Neuropsychopharmacology	Shared genetic background between children and adults with attention deficit/hyperactivity disorder.	Attention deficit hyperactivity disorder	17,149 European ancestry cases, 32,411 European ancestry controls	NA	7q31.32	CADPS2, FEZF1, FEZF1-AS1	rs3958046-T	0.4	2E-8		1.09	[1.06-1.10]	Illumina [~ 1092418] (imputed)	N
1515	chr7	121955467	121955468	rs10252114	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	7q31.32	CADPS2	rs10252114-T	0.6182	3E-8		0.01233972	[0.008-0.0167] unit decrease	Affymetrix [11514654] (imputed)	N
1515	chr7	121955980	121955981	rs10237306	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	7q31.32		rs10237306-T	NR	2E-18		0.0149	[0.012-0.018] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1515	chr7	121957581	121957582	rs28452470	30478444	Demontis D	2018-11-26	Nat Genet	Discovery of the first genome-wide significant risk loci for attention deficit/hyperactivity disorder.	Attention deficit hyperactivity disorder	19,099 European ancestry cases, 72 non-European ancestry cases, 1,012 Han Chinese ancestry cases, 34,194 European ancestry controls, 72 non-European ancestry controls, 925 Han Chinese ancestry controls	5,085 Icelandic ancestry cases, 5,857 cases, 131,122 Icelandic ancestry controls, 70,393 controls	7q31.32	CADPS2	rs28452470-A	NR	3E-6		1.042	NR	Affymetrix, Illumina, Perlegen [8047421] (imputed)	N
1515	chr7	121960437	121960438	rs1443749	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7q31.32		rs1443749-?	NR	3E-20				NR [~ 8900000] (imputed)	N
1515	chr7	121962091	121962091	rs140515369	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	7q31.32		rs140515369-TA	NR	6E-18		0.0114	[0.0089-0.0139] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1515	chr7	121963812	121963813	rs10248298	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	7q31.32		rs10248298-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1515	chr7	121964348	121964349	rs1899689	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		7q31.32	CADPS2	rs1899689-C	0.610356	4E-8		0.00773624	[0.005-0.0105] unit decrease	Affymetrix [12370749]	N
1515	chr7	121964348	121964349	rs1899689	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	7q31.32	NR	rs1899689-?	NR	9E-10				Affymetrix [~ 8270000] (imputed)	N
1515	chr7	121964348	121964349	rs1899689	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	7q31.32	NA	rs1899689-T	0.3939	4E-13		0.012	[0.0087-0.0153] unit increase	NR [~ 27400000] (imputed)	N
1515	chr7	121967348	121967349	rs1443750	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	7q31.32	CADPS2	rs1443750-C	0.6353	3E-8		0.013624525	[0.0088-0.0184] unit decrease	Affymetrix [11515109] (imputed)	N
1515	chr7	121978065	121978066	rs1899692	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	7q31.32		rs1899692-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1515	chr7	121980980	121980981	rs1822518	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	7q31.32	CADPS2	rs1822518-A	0.775	4E-11		0.0094	[0.0067-0.0121] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
1515	chr7	121985540	121985541	rs798685	33692830	Indencleef K	2021-02-22	Front Genet	The Intersection of the Genetic Architectures of Orofacial Clefts and Normal Facial Variation.	Facial morphology traits (59 NSCL/P endophenotypic segments)	8,246 European ancestry individuals	NA	7q31.32	NR	rs798685-?	NR	6E-13	(Quadrant II (Nose), Segment 45)	0.03406067	NR unit increase	NR [7417619] (imputed)	N
1515	chr7	121985540	121985541	rs798685	33692830	Indencleef K	2021-02-22	Front Genet	The Intersection of the Genetic Architectures of Orofacial Clefts and Normal Facial Variation.	Facial morphology traits (59 NSCL/P endophenotypic segments)	8,246 European ancestry individuals	NA	7q31.32	NR	rs798685-?	NR	3E-8	(Quadrant II (Nose), Segment 11)	0.018127162	NR unit increase	NR [7417619] (imputed)	N
1515	chr7	121987157	121987158	rs798682	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 45)	4,680 European ancestry individuals	3,566 European ancestry individuals	7q31.32		rs798682-A	0.258439045	9E-24				Illumina [7417619] (imputed)	N
1515	chr7	122027385	122027386	rs144898246	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	7q31.32	CADPS2, RP5-1101C3.1	rs144898246-C	0.9765	7E-6		0.1053	[0.059-0.151] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1515	chr7	122027385	122027386	rs144898246	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	7q31.32	CADPS2, RP5-1101C3.1	rs144898246-C	0.9765	7E-6		0.1053	[0.059-0.151] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1516	chr7	122042977	122042978	rs77462788	28300201	Hernandez-Pacheco N	2017-03-16	Sci Rep	Identification of a novel locus associated with skin colour in African-admixed populations.	Skin pigmentation	285 Puerto Rican individuals	373 African American individuals	7q31.32	NR	rs77462788-C	NR	7E-6	(Hispanic)	8.08	[4.63-11.54] unit increase	Affymetrix [14000000] (imputed)	N
1516	chr7	122065218	122065219	rs12706411	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	7q31.32	Intergenic	rs12706411-T	NR	8E-7	(between families)	4.928	unit increase	Affymetrix [up to 15107142] (imputed)	N
1516	chr7	122074415	122074416	rs983521	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	7q31.32		rs983521-?	NR	7E-8				NR [~ 8900000] (imputed)	N
1516	chr7	122087591	122087592	rs7785662	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	7q31.32		rs7785662-A	0.3535	1E-10	(conditional-joint)	0.0097	[0.0068-0.0126] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1516	chr7	122097057	122097058	rs6466819	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	7q31.32	Intergenic	rs6466819-A	0.3662	4E-8	(MTAG)	0.0094	[0.0061-0.0127] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1516	chr7	122097057	122097058	rs6466819	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	7q31.32	Intergenic	rs6466819-A	0.369	4E-10	(MTAG)	0.0085	[0.0058-0.0112] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1516	chr7	122098781	122098782	rs17144467	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	7q31.32		rs17144467-A	0.6867	9E-11		0.0098	[0.0069-0.0127] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1516	chr7	122157894	122157895	rs11764665	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7q31.32		rs11764665-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1517	chr7	122160741	122160742	rs11767400	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	7q31.32	CADPS2	rs11767400-A	0.3	4E-11		0.04	[0.028-0.052] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
1517	chr7	122202592	122202593	rs2429582	20171287	Stein JL	2010-02-17	Neuroimage	Voxelwise genome-wide association study (vGWAS).	Brain structure	740 European ancestry individuals	NA	7q31.32	CADPS2	rs2429582-?	0.34	6E-7				Illumina [448293]	N
1517	chr7	122271314	122271315	rs80261602	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	7q31.32	NR	rs80261602-?	NR	1E-6		0.3507	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1518	chr7	122341148	122341149	rs6466832	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Ejection fraction in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	7q31.32	NR	rs6466832-?	NR	1E-6				Affymetrix [5486770] (imputed)	N
1518	chr7	122371706	122371707	rs9969220	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Cardio-cerebrovascular disease in hypertension	1,185 Korean ancestry cases, 15,117 Korean ancestry controls	NA	7q31.32		rs9969220-A	0.3272	6E-6		0.8041	[0.7318-0.8836]	Affymetrix [7975321] (imputed)	N
1519	chr7	122482976	122482977	rs17684427	27412988	Tise CG	2016-07-13	G3 (Bethesda)	From Genotype to Phenotype: Nonsense Variants in SLC13A1 Are Associated with Decreased Serum Sulfate and Increased Serum Aminotransferases.	Serum sulfate level	917 Old Order Amish (founder/genetic isolate) individuals	NA	7q31.32	CADPS2	rs17684427-?	NR	9E-10		0.086	NR unit decrease	Affymetrix [NR]	N
1520	chr7	122648708	122648709	rs11983656	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip	15 Asian ancestry cases, 13 European ancestry cases, 15 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	7q31.32	NR	rs11983656-?	NR	1E-6		3.14	[2.5-3.94]	Illumina [539000] (imputed)	N
1520	chr7	122678066	122678067	rs111681691	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	7q31.32	NR	rs111681691-?	NR	5E-6		7.252	NR unit increase	Affymetrix [at least 600000] (imputed)	N
1520	chr7	122681709	122681710	rs73444001	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7q31.32	NR	rs73444001-C	0.06098	2E-8	(FHL1)	0.003235	NR unit increase	Illumina [1671387] (imputed)	N
1521	chr7	122759979	122759980	rs4727963	23648065	Low SK	2013-05-04	Cancer Sci	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (docetaxel)	147 Japanese ancestry cases, 233 Japanese ancestry controls	NA	7q31.32	SLC13A1	rs4727963-C	0.618	1E-6	(Dominant model)	2.094	[1.505-2.914]	Illumina [733202]	N
1521	chr7	122811011	122811011	rs11439544	30498476	Liu H	2018-11-15	Front Endocrinol (Lausanne)	Heritability and Genome-Wide Association Study of Plasma Cholesterol in Chinese Adult Twins.	High density lipoprotein cholesterol levels	139 Chinese ancestry dizygotic twin pairs	NA	7q31.32	SLC13A1	rs11439544-?		2E-6				Illumina [7405822] (imputed)	N
1522	chr7	122882672	122882673	rs185903930	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	225,112 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	445,360 individuals	7q31.32	SLC13A1	rs185903930-A	0.002	4E-8		3.11	[2-4.22] mmHg increase	Affymetrix [NR] (imputed)	N
1523	chr7	123044506	123044507	rs71574743	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	7q31.32	Intergenic	rs71574743-T	NR	1E-7	(between families)	5.329	unit increase	Affymetrix [up to 15107142] (imputed)	N
1524	chr7	123102828	123102829	rs34691578	34387878	Kim KY	2021-08-13	Hepatology	Genome-wide association of individual vulnerability with alcoholic liver disease: A Korean Genome and Epidemiology Study.	Alcohol-associated liver disease in non drinkers	782 Korean ancestry cases, 18,058 Korean ancestry controls	NA	7q31.32		rs34691578-?	NR	1E-5		1.542	[1.273-1.869]	Affymetrix [7975321] (imputed)	N
1525	chr7	123269117	123269118	rs4731112	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	7q31.32		rs4731112-C	0.6816	3E-13		0.17023256	[0.12-0.22] mmHg decrease	Affymetrix, Illumina [242865] (imputed)	N
1525	chr7	123269117	123269118	rs4731112	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	7q31.32		rs4731112-C	0.6815	1E-9		0.09137496	[0.062-0.121] mmHg decrease	Affymetrix, Illumina [242866] (imputed)	N
1525	chr7	123269117	123269118	rs4731112	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Mean arterial pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	NA	7q31.32	ASB15	rs4731112-G	0.303946031849672	7E-6		0.22200882	[0.13-0.32] unit increase	Illumina [247039]	N
1525	chr7	123271191	123271192	rs12669165	31786426	Farias Tempaku P	2019-08-14	Sleep Med	Genome-wide association study reveals two novel risk alleles for incident obstructive sleep apnea in the EPISONO cohort.	Obstructive sleep apnea trait (apnea hypopnea index, change over time)	404 European ancestry individuals, 97 Black individuals, 20 Asian ancestry individuals, 20 Indigenous individuals, 138 mixed race individuals, 27 individuals	NA	7q31.32	NR	rs12669165-C	0.085	6E-8		0.2785	[0.18-0.38] unit increase	Illumina [up to 730525]	N
1525	chr7	123276196	123276197	rs6466879	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	7q31.32		rs6466879-?	NR	7E-8				NR [~ 8900000] (imputed)	N
1525	chr7	123283948	123283949	rs4731113	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	7q31.32	ASB15	rs4731113-T	0.9579	5E-8		0.0196	[0.012-0.027] unit increase	Affymetrix, Illumina [33811881] (imputed)	N
1525	chr7	123301939	123301940	rs7809453	27663945	Middeldorp CM	2016-08-05	J Am Acad Child Adolesc Psychiatry	A Genome-Wide Association Meta-Analysis of Attention-Deficit/Hyperactivity Disorder Symptoms in Population-Based Pediatric Cohorts.	Attention deficit hyperactivity disorder symptom score	17,666 children	NA	7q31.32	LMOD2	rs7809453-A	0.54	3E-6				Affymetrix, Illumina [at least 5260671] (imputed)	N
1525	chr7	123312846	123312847	rs4731117	31786426	Farias Tempaku P	2019-08-14	Sleep Med	Genome-wide association study reveals two novel risk alleles for incident obstructive sleep apnea in the EPISONO cohort.	Obstructive sleep apnea trait (apnea hypopnea index, change over time)	404 European ancestry individuals, 97 Black individuals, 20 Asian ancestry individuals, 20 Indigenous individuals, 138 mixed race individuals, 27 individuals	NA	7q31.32	NR	rs4731117-G	0.083	4E-8		0.2799	[0.18-0.38] unit increase	Illumina [up to 730525]	N
1525	chr7	123317139	123317140	rs1506636	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	7q31.32	WASL	rs1506636-G	0.6784	7E-11		0.02551785	[0.018-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
1525	chr7	123317139	123317140	rs1506636	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	7q31.32	WASL	rs1506636-G	0.6784	9E-14		0.0290284	[0.021-0.037] unit increase	Affymetrix [~ 2500000] (imputed)	N
1525	chr7	123334331	123334332	rs4727974	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	7q31.32		rs4727974-G	NR	8E-12		0.0206	[0.015-0.026] unit increase	Affymetrix, Illumina [20536605] (imputed)	N
1526	chr7	123340500	123340501	rs34850578	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	7q31.32	WASL	rs34850578-C	0.69499	2E-13		0.0183401	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1526	chr7	123340500	123340501	rs34850578	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	7q31.32	WASL	rs34850578-C	0.69498	5E-12		0.017286824	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1526	chr7	123340500	123340501	rs34850578	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	7q31.32	WASL	rs34850578-C	0.695042	8E-12		0.017007558	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1526	chr7	123340500	123340501	rs34850578	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	7q31.32	WASL	rs34850578-C	0.695045	1E-10		0.016040402	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1526	chr7	123376559	123376560	rs9649465	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NA	7q31.32	intergenic	rs9649465-A	0.45	1E-6		1.06	[1.03-1.08]	Affymetrix, Illumina [~ 2300000] (imputed)	N
1526	chr7	123405941	123405942	rs12670684	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	7q31.32		rs12670684-G	0.079701	1E-12		0.029928908	[0.022-0.038] unit increase	Affymetrix [93095623] (imputed)	N
1526	chr7	123405941	123405942	rs12670684	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q31.32	NR	rs12670684-G	0.0844346	7E-15				Affymetrix, Illumina [21126107] (imputed)	N
1526	chr7	123406060	123406061	rs12666411	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	7q31.32		rs12666411-A	0.0799029999999999	2E-20		0.03911456	[0.031-0.047] unit decrease	Affymetrix [93095623] (imputed)	N
1526	chr7	123411222	123411223	rs4731120	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	7q31.32		rs4731120-A	0.919	5E-41				Affymetrix [10369434] (imputed)	N
1526	chr7	123411222	123411223	rs4731120	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	7q31.32	NR	rs4731120-C	NR	1E-27		0.0494	[0.041-0.058] unit decrease	Affymetrix [9000000] (imputed)	N
1526	chr7	123411222	123411223	rs4731120	22139419	Gieger C	2011-11-30	Nature	New gene functions in megakaryopoiesis and platelet formation.	Platelet count	38,891 European ancestry individuals, 1,661 Val Borbera (founder/genetic isolate) individuals, 521 Carlantino (founder/genetic isolate) individuals, 1,198 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,213 South Tyrolean (founder/genetic isolate) individuals, 890 Sorbian (founder/genetic isolate) individuals, 4,292 Sardinian (founder/genetic isolate) individuals	Up to 16,949 European ancestry individuals, 854 Cliento (founder/genetic isolate) individuals, 1,035 Talana (founder/genetic isolate) individuals	7q31.32	WASL	rs4731120-C	NR	3E-12		4.14	[2.98-5.3] 10^9/l increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1526	chr7	123411666	123411667	rs77844289	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q31.32	NR	rs77844289-T	0.921655	2E-32				Affymetrix, Illumina [17210439] (imputed)	N
1526	chr7	123411909	123411910	rs77300440	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	7q31.32	NR	rs77300440-C	0.919811	1E-34		0.043188	[0.036-0.05] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1526	chr7	123411909	123411910	rs77300440	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	7q31.32	intergenic	rs77300440-T	0.0807	1E-24		0.06859267	[0.055-0.082] unit increase	Affymetrix [~ 2500000] (imputed)	N
1526	chr7	123414016	123414017	rs11359096	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	7q31.32		rs11359096-T	NR	8E-28		0.0464	[0.038-0.055] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
1526	chr7	123417758	123417759	rs666266	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	7q31.32		rs666266-A	0.688	6E-19				Affymetrix [10369434] (imputed)	N
1526	chr7	123418477	123418478	rs75759008	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	7q31.32	intergenic	rs75759008-G	0.0793	2E-10		0.04231557	[0.029-0.055] unit increase	Affymetrix [~ 2500000] (imputed)	N
1526	chr7	123418492	123418493	rs77972171	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	7q31.32	NR	rs77972171-T	0.079945	5E-16		0.029882	[0.023-0.037] SD unit increase	Affymetrix, Illumina [50282193] (imputed)	N
1526	chr7	123418492	123418493	rs77972171	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	7q31.32	intergenic	rs77972171-T	0.0786	7E-9		0.03871022	[0.026-0.052] unit increase	Affymetrix [~ 2500000] (imputed)	N
1526	chr7	123419544	123419547	rs141165119	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	7q31.32	NR	rs141165119-T	0.079904	5E-20		0.03860233	[0.03-0.047] unit increase	Affymetrix [93095623] (imputed)	N
1526	chr7	123419544	123419547	rs141165119	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	7q31.32	NR	rs141165119-T	0.079885	4E-23		0.041739892	[0.033-0.05] unit increase	Affymetrix [93095623] (imputed)	N
1526	chr7	123422761	123422762	rs113544461	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	7q31.32		rs113544461-C	0.079681	1E-61		0.07034672	[0.062-0.079] unit increase	Affymetrix [93095623] (imputed)	N
1526	chr7	123423500	123423505	rs142832080	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	7q31.32		rs142832080-T	0.079063	5E-14		0.0303449	[0.022-0.038] unit increase	Affymetrix [93095623] (imputed)	N
1526	chr7	123423586	123423587	rs12667832	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q31.32	NR	rs12667832-T	0.0842962	4E-103				Affymetrix, Illumina [24588908] (imputed)	N
1526	chr7	123424708	123424709	rs725860	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	7q31.32	NR	rs725860-C	0.080232	2E-100		0.071593	[0.065-0.078] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1526	chr7	123424708	123424709	rs725860	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	7q31.32	intergenic	rs725860-C	0.08	9E-19		0.0597362	[0.047-0.073] unit increase	Affymetrix [~ 2500000] (imputed)	N
1526	chr7	123426568	123426569	rs200885092	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	7q31.32		rs200885092-A	NR	4E-68		0.0725	[0.064-0.081] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1526	chr7	123426568	123426569	rs200885092	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	7q31.32	RNU6-11P	rs200885092-A	0.089112	2E-44		0.057923585	[0.05-0.066] unit increase	Affymetrix [93095623] (imputed)	N
1526	chr7	123426568	123426569	rs200885092	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	7q31.32	RNU6-11P	rs200885092-A	0.0905	1E-10		0.04155879	[0.029-0.054] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1526	chr7	123428915	123428916	rs77738210	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	7q31.32		rs77738210-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1526	chr7	123428915	123428916	rs77738210	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	7q31.32		rs77738210-G	0.92	4E-25				Affymetrix [10369434] (imputed)	N
1526	chr7	123428915	123428916	rs77738210	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q31.32	NR	rs77738210-T	0.0901197	2E-15				Affymetrix, Illumina [24246363] (imputed)	N
1526	chr7	123430826	123430826	rs200127094	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	7q31.32		rs200127094-A	0.92	3E-9		0.12	[0.08-0.16] % increase	Affymetrix [NR] (imputed)	N
1526	chr7	123430826	123430826	rs200127094	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	7q31.32	RNU6-11P	rs200127094-AT	0.080085	5E-58		0.067044206	[0.059-0.075] unit decrease	Affymetrix [93095623] (imputed)	N
1526	chr7	123430826	123430826	rs200127094	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	7q31.32	RNU6-11P	rs200127094-AT	0.0801150000000001	2E-15		0.0299484	[0.022-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
1526	chr7	123430826	123430826	rs200127094	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	7q31.32	NR	rs200127094-I	0.080275	8E-17		0.030862	[0.024-0.038] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1526	chr7	123431116	123431117	rs4731122	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	7q31.32	RNU6-11P	rs4731122-T	0.079471	8E-11		0.027372254	[0.019-0.036] unit increase	Affymetrix [93095623] (imputed)	N
1526	chr7	123439081	123439082	rs676755	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	7q31.32		rs676755-A	0.310236	2E-13		0.018056402	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1526	chr7	123441261	123441262	rs10243279	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	7q31.32		rs10243279-A	0.309985	4E-10		0.01564104	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1526	chr7	123441261	123441262	rs10243279	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	7q31.32		rs10243279-A	0.309991	5E-19		0.022240426	[0.017-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1526	chr7	123442306	123442311	rs145149164	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	7q31.32		rs145149164-C	NR	2E-10		0.0218	[0.015-0.028] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
1528	chr7	123612793	123612794	rs4731134	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Perceived intensity of neohesperidin dihydrochalcone	1,757 European ancestry twins	NA	7q31.32	SPAM1	rs4731134-G	0.3	3E-6		0.18	[0.1-0.26] unit increase	Illumina [4381914] (imputed)	N
1528	chr7	123683204	123683205	rs138879850	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder	29,475 European ancestry cases, 63,482 European ancestry controls	NA	7q31.32	NR	rs138879850-T	0.99147537	2E-7		1.0822511	[1.05-1.11]	Affymetrix [7791636] (imputed)	N
1528	chr7	123686673	123686674	rs12671563	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	7q31.32	HYAL4	rs12671563-?	NR	7E-6	(PC 36:1)	0.41004643	[0.23-0.59] unit increase	Affymetrix [at least 2500000] (imputed)	N
1528	chr7	123689193	123689194	rs7783359	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Reaction time	330,024 British ancestry individuals	NA	7q31.32		rs7783359-?	NR	2E-8				NR [7857346] (imputed)	N
1528	chr7	123689193	123689194	rs7783359	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	7q31.32	ENSG00000242593	rs7783359-?	NR	3E-8		0.009673	[0.0063-0.0131] unit increase	Affymetrix [805426] (imputed)	N
1528	chr7	123691639	123691640	rs57155492	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7q31.32		rs57155492-?	NR	7E-10				NR [~ 8900000] (imputed)	N
1530	chr7	123948984	123948985	rs6973899	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota alpha diversity (Shannon index)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	7q31.33		rs6973899-G	NR	7E-6		4.4863544	z score decrease	Affymetrix, Illumina [NR] (imputed)	N
1531	chr7	124027342	124027343	rs139128699	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		AC006148.1	rs139128699-?	NR	5E-9		1.5308	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1531	chr7	124069510	124069511	rs7784948	33445220	Li Y	2021-01-14	Am J Transplant	Donor genetic variants as risk factors for thrombosis after liver transplantation: A genome-wide association study.	Thrombosis in response to liver transplant	42 European ancestry pediatric cases, 268 European ancestry pediatric controls	64 European ancestry adult cases, 711 European ancestry adult controls	7q31.33	NR	rs7784948-T	0.09338	2E-6		2.5804	NR	Illumina [5393447] (imputed)	N
1531	chr7	124118732	124118733	rs180724426	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	7q31.33		rs180724426-T	0.0010916	6E-6		0.46681	[0.26-0.67] unit decrease	Affymetrix [15580782] (imputed)	N
1531	chr7	124120930	124120931	rs12666460	34417961	Guo D	2021-08-21	Biol Trace Elem Res	Preliminary study of genome-wide association identifies novel susceptibility genes for serum mineral elements in the Chinese Han population.	Lead levels	587 Han Chinese ancestry individuals	NA	7q31.33		rs12666460-?	NR	2E-6		0.103	[-0.82016-1.02616] unit decrease	Affymetrix [6423076] (imputed)	N
1532	chr7	124176098	124176099	rs2402732	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure	35,269 European ancestry cases, 63,451 European ancestry controls	NA	7q31.33	NR	rs2402732-T	0.407863	7E-6		1.0649627	[1.04-1.09]	Affymetrix [7791636] (imputed)	N
1532	chr7	124219482	124219483	rs184250467	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	7q31.33		rs184250467-G	0.0010274	7E-7		0.52766	[0.32-0.74] unit decrease	Affymetrix [15580782] (imputed)	N
1533	chr7	124337486	124337487	rs849644	26718567	Williams SR	2015-12-30	Neurology	Shared genetic susceptibility of vascular-related biomarkers with ischemic and recurrent stroke.	Thrombin-antithrombin complex levels in ischemic stroke	up to 1,725 European ancestry cases, up to 258 African ancestry cases, up to 117 cases	NA	7q31.33	NR	rs849644-?	NR	4E-6				Illumina [7500450] (imputed)	N
1533	chr7	124384326	124384327	rs7802263	23738518	Luciano M	2013-06-05	Genes Brain Behav	A genome-wide association study for reading and language abilities in two population cohorts.	Reading and spelling	6,649 European ancestry children and adolescents	NA	7q31.33	GPR37	rs7802263-?	NR	8E-6				Illumina [~ 2400000] (imputed)	N
1533	chr7	124386654	124386655	rs149031046	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7q31.33	NR	rs149031046-A	0.01045	2E-9	(GGH)	0.1077	NR unit increase	Illumina [1671387] (imputed)	N
1534	chr7	124392511	124392512	rs2267708	28165464	Law PJ	2017-02-06	Nat Commun	Genome-wide association analysis implicates dysregulation of immunity genes in chronic lymphocytic leukaemia.	Chronic lymphocytic leukemia	4,478 European ancestry cases and 13,213 European ancestry controls.	1,722 European ancestry cases and 4,385 European ancestry controls.	7q31.33	POT1	rs2267708-T	NR	9E-9		1.16	[1.1-1.22]	Affymetrix, Illumina [> 10000000] (imputed)	N
1534	chr7	124396644	124396645	rs4731207	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous malignant melanoma	36,760 European ancestry cases, 375,188 European ancestry controls	NA	7q31.33	GPR37	rs4731207-A	0.4599	2E-15		1.0793308	NR	Affymetrix, Illumina [NR] (imputed)	N
1534	chr7	124396644	124396645	rs4731207	26237428	Law MH	2015-08-03	Nat Genet	Genome-wide meta-analysis identifies five new susceptibility loci for cutaneous malignant melanoma.	Cutaneous malignant melanoma	12,874 European ancestry cases, 23,203 European ancestry controls	785 European ancestry cases, 791 European ancestry controls, 2,331 cases, 2,415 controls	7q31.33	GPR37, POT1	rs4731207-A	0.5	5E-7		0.079	[NR] unit increase	Affymetrix, Illumina [at least 1569314] (imputed)	N
1534	chr7	124418463	124418463	rs112108707	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	7q31.33		rs112108707-ATGTGTGCATCTGCT	NR	3E-8		0.0113	[0.0074-0.0152] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
1534	chr7	124427517	124427517	rs11380525	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	7q31.33		rs11380525-TG	NR	8E-11		0.0141	[0.0098-0.0184] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
1534	chr7	124427517	124427517	rs11380525	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	7q31.33		rs11380525-T	0.715	8E-10		0.08	[-0.1--0.05] % decrease	Affymetrix [NR] (imputed)	N
1534	chr7	124427517	124427517	rs11380525	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	7q31.33		rs11380525-TG	0.284309	5E-13		0.017889129	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1534	chr7	124427517	124427517	rs11380525	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	7q31.33		rs11380525-TG	0.284286	4E-14		0.0169591	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1534	chr7	124427517	124427517	rs11380525	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	7q31.33		rs11380525-TG	0.284301	2E-11		0.016470864	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1534	chr7	124436138	124436139	rs28523990	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Lewy body disease	up to 3,526 individuals	NA	7q31.33	intergenic	rs28523990-T	0.282	7E-6	(Ordinal I)	0.2719	[0.15-0.39] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1534	chr7	124439598	124439599	rs2402752	23749187	Cortes A	2013-07-01	Nat Genet	Identification of multiple risk variants for ankylosing spondylitis through high-density genotyping of immune-related loci.	Ankylosing spondylitis	9,069 European ancestry cases, 1,550 East Asian ancestry cases, 13,578 European ancestry controls, 1,567 East Asian ancestry controls	NA	7q31.33	GPR37	rs2402752-T	0.706	5E-7		1.1		Illumina [128935]	N
1534	chr7	124439598	124439599	rs2402752	23749187	Cortes A	2013-07-01	Nat Genet	Identification of multiple risk variants for ankylosing spondylitis through high-density genotyping of immune-related loci.	Ankylosing spondylitis	9,069 European ancestry cases, 1,550 East Asian ancestry cases, 13,578 European ancestry controls, 1,567 East Asian ancestry controls	NA	7q31.33	GPR37	rs2402752-T	0.706	2E-6	(EA)	1.11		Illumina [128935]	N
1534	chr7	124446136	124446137	rs3925331	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	7q31.33		rs3925331-G	0.286796	5E-9		0.014296047	[0.0095-0.0191] unit increase	Affymetrix [93095623] (imputed)	N
1534	chr7	124446136	124446137	rs3925331	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	7q31.33		rs3925331-G	0.286777	1E-9		0.014869436	[0.01-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1534	chr7	124453257	124453258	rs10241173	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	7q31.33		rs10241173-?	NR	3E-10				NR [~ 8900000] (imputed)	N
1534	chr7	124459851	124459852	rs7790856	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	7q31.33		rs7790856-T	NR	3E-11		0.0143	[0.01-0.018] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
1534	chr7	124462080	124462081	rs727505	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	7q31.33		rs727505-?	NR	1E-12				NR [~ 8900000] (imputed)	N
1534	chr7	124462080	124462081	rs727505	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Lewy body disease	up to 3,526 individuals	NA	7q31.33	intergenic	rs727505-A	0.2876	5E-6	(Case/control)	0.2807	[0.25-0.31] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1534	chr7	124462080	124462081	rs727505	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Lewy body disease	up to 3,526 individuals	NA	7q31.33	intergenic	rs727505-A	0.2875	6E-6	(Ordinal II)	0.2777	[0.16-0.4] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1534	chr7	124462388	124462388	rs148739261	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	7q31.33	NR	rs148739261-D	0.718106	3E-13		0.016733	[0.012-0.021] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1534	chr7	124462388	124462388	rs148739261	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	7q31.33	NR	rs148739261-D	0.71809	7E-11		0.015076	[0.011-0.02] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
1534	chr7	124462660	124462661	rs17246404	24292274	Speedy HE	2013-12-01	Nat Genet	A genome-wide association study identifies multiple susceptibility loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	1,739 European ancestry cases, 5,199 European ancestry controls	1,144 European ancestry cases, 3,151 European ancestry controls	7q31.33	POT1	rs17246404-C		3E-8		1.22	[1.14-1.31]	Illumina [450000] (imputed)	N
1534	chr7	124481167	124481168	rs79314063	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Uterine fibroids	21,024 European ancestry cases, 237,694 European ancestry controls, 14,475 East Asian ancestry cases, 65,733 East Asian ancestry controls	NA	7q31.33		rs79314063-G	NR	5E-9		0.5165	[0.34-0.69] unit decrease	Affymetrix, Illumina [25795146] (imputed)	N
1534	chr7	124481167	124481168	rs79314063	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Uterine fibroids	14,475 East Asian ancestry cases, 65,733 East Asian ancestry controls	NA	7q31.33		rs79314063-G	0.006889189	5E-9		0.51646614	[0.34-0.69] unit decrease	Illumina [13401454] (imputed)	N
1534	chr7	124481167	124481168	rs79314063	33941849	Chang X	2021-05-03	Commun Biol	Low frequency variants associated with leukocyte telomere length in the Singapore Chinese population.	Telomere length	20,177 Chinese ancestry individuals	5,356 Chinese ancestry individuals	7q31.33	POT1	rs79314063-G	0.007	1E-9		0.32	[0.3-0.34] NR decrease	Illumina [up to 4756872] (imputed)	N
1534	chr7	124487024	124487025	rs75932146	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Lung cancer	4,050 Japanese ancestry cases, 208,403 Japanese ancestry controls	2,440 Japanese ancestry cases, 467 Japanese ancestry controls	7q31.33		rs75932146-?	NR	2E-11		2.4191742	[1.8704174425535-3.12892890932355]	Illumina [8919992] (imputed)	N
1534	chr7	124487024	124487025	rs75932146	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Lung cancer	1,340 Japanese ancestry female cases, 101,766 Japanese ancestry female controls	NA	7q31.33		rs75932146-G	0.028748516	2E-8		2.2854435	[1.710882561-3.052957942]	Illumina [8919992] (imputed)	N
1534	chr7	124487309	124487310	rs10268372	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q31.33	NR	rs10268372-A	0.668929	2E-12				Affymetrix, Illumina [24246363] (imputed)	N
1534	chr7	124518171	124518172	rs113394869	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Nevus count or cutaneous melanoma	36,760 European ancestry cutaneous melanoma cases, 375,188 European ancestry controls, 12,930 European ancestry individuals, 52,847 individuals	NA	7q31.33	GPR37	rs113394869-G	0.728211	2E-15				Affymetrix, Illumina [NR] (imputed)	N
1535	chr7	124531503	124531504	rs148101639	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	7q31.33	GPR37, POT1	rs148101639-?		4E-8				Affymetrix, Illumina [NR] (imputed)	N
1535	chr7	124554266	124554267	rs59294613	32109421	Li C	2020-02-20	Am J Hum Genet	Genome-Wide Association Analysis in Humans Links Nucleotide Metabolism to Leukocyte Telomere Length.	Leukocyte telomere length	78,592 European ancestry individuals	NA	7q31.33	POT1	rs59294613-A	0.29	1E-13		0.041	[0.029-0.053] unit decrease	Affymetrix, Illumina, Perlegen [up to 30071938] (imputed)	N
1535	chr7	124554266	124554267	rs59294613	28598434	Scelo G	2017-06-09	Nat Commun	Genome-wide association study identifies multiple risk loci for renal cell carcinoma.	Renal cell carcinoma	10,784 European ancestry cases, 20,406 European ancestry controls	3,182 European ancestry cases, 6,301 European ancestry controls	7q31.33	NR	rs59294613-?	NR	8E-8		1.0982976	[1.06-1.14]	Illumina [7437091] (imputed)	N
1535	chr7	124583895	124583896	rs58618031	30213928	Went M	2018-09-13	Nat Commun	Identification of multiple risk loci and regulatory mechanisms influencing susceptibility to multiple myeloma.	Multiple myeloma	8,197 European ancestry cases, 241,468 European ancestry controls	1,777 European ancestry cases, 6,088 European ancestry controls	7q31.33	NR	rs58618031-T	0.72	3E-8		1.12		Illumina [up to 10291845] (imputed)	N
1535	chr7	124599748	124599749	rs7776744	33941849	Chang X	2021-05-03	Commun Biol	Low frequency variants associated with leukocyte telomere length in the Singapore Chinese population.	Telomere length	20,177 Chinese ancestry individuals	5,356 Chinese ancestry individuals	7q31.33		rs7776744-G	0.578	1E-11		0.065	[-0.06632-0.19632] NR decrease	Illumina [up to 4756872] (imputed)	N
1535	chr7	124599748	124599749	rs7776744	31171785	Dorajoo R	2019-06-06	Nat Commun	Loci for human leukocyte telomere length in the Singaporean Chinese population and trans-ethnic genetic studies.	Leukocyte telomere length	16,759 Singaporean Han Chinese ancestry individuals	6,337 Singaporean Chinese ancestry individuals, up to 37,505 European ancestry individuals	7q31.33	POT1	rs7776744-G	NR	3E-10	(East Asian)	0.058	NR unit decrease	Illumina [6407959] (imputed)	N
1535	chr7	124599748	124599749	rs7776744	31171785	Dorajoo R	2019-06-06	Nat Commun	Loci for human leukocyte telomere length in the Singaporean Chinese population and trans-ethnic genetic studies.	Leukocyte telomere length	16,759 Singaporean Han Chinese ancestry individuals	6,337 Singaporean Chinese ancestry individuals, up to 37,505 European ancestry individuals	7q31.33	POT1	rs7776744-G	NR	2E-11		0.039	NR unit decrease	Illumina [6407959] (imputed)	N
1535	chr7	124601963	124601964	rs142062163	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		POT1-AS1	rs142062163-?	NR	3E-8	(female)	3.99412	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1536	chr7	124674171	124674172	rs56790667	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Scarlet fever	6,812 European ancestry cases, 113,837 European ancestry controls	NA	7q31.33	NR	rs56790667-?	NR	8E-6		0.3795	[0.2-0.55] unit increase	Illumina [at least 560000] (imputed)	N
1537	chr7	124783848	124783849	rs2293346	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Lateral orbital frontal cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	7q31.33	NR	rs2293346-?		5E-6				Illumina [4322238] (imputed)	N
1537	chr7	124804886	124804887	rs61068276	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q31.33	NR	rs61068276-T	0.470775	1E-11				Affymetrix, Illumina [19872809] (imputed)	N
1537	chr7	124804886	124804887	rs61068276	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	7q31.33	NR	rs61068276-T	0.443767	8E-13		0.014308	[0.01-0.018] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
1537	chr7	124819444	124819445	rs75190194	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin I concentration	1,606 African American individuals	NA	7q31.33		rs75190194-?	NR	4E-6		0.45	[0.26-0.64] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1538	chr7	124993195	124993199	rs151059277	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 22)	2,187 European ancestry individuals	NA	7q31.33	NR	rs151059277-A	0.06995	2E-6		0.2858	[0.17-0.4] unit increase	Illumina [10677593] (imputed)	N
1540	chr7	125237957	125237958	rs77499314	31792241	Gouveia MH	2019-12-02	Sci Rep	Genetics of cognitive trajectory in Brazilians: 15 years of follow-up from the Bambui-Epigen Cohort Study of Aging.	Cognitive decline (age-related)	1,407 Brazilian ancestry individuals	NA	7q31.33		rs77499314-?	NR	9E-8		0.0678	unit decrease	Illumina [at least 2500000] (imputed)	N
1540	chr7	125244576	125244577	rs73435943	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Anti-saccade response	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	7q31.33	LOC101928283	rs73435943-T	0.09349	8E-6				Illumina [4404269] (imputed)	N
1540	chr7	125255084	125255086	rs201048567	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Anti-saccade response	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	7q31.33	LOC101928283	rs201048567-?	NR	6E-9	(African)			Illumina [4404269] (imputed)	N
1540	chr7	125255084	125255086	rs201048567	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Anti-saccade error rate in psychotic disorders	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases	NA	7q31.33	LOC101928283	rs201048567-?	NR	2E-7	(African)			Illumina [4404269] (imputed)	N
1540	chr7	125283562	125283566	rs59915692	30498476	Liu H	2018-11-15	Front Endocrinol (Lausanne)	Heritability and Genome-Wide Association Study of Plasma Cholesterol in Chinese Adult Twins.	Total cholesterol levels	139 Chinese ancestry dizygotic twin pairs	NA	7q31.33	LOC100506664	rs59915692-?		7E-6				Illumina [7405822] (imputed)	N
1541	chr7	125373425	125373426	rs11771617	30487263	Pollack S	2018-11-28	Diabetes	Multiethnic Genome-wide Association Study of Diabetic Retinopathy using Liability Threshold Modeling of Duration of Diabetes and Glycemic Control.	Diabetic retinopathy (all NPDR and PDR)	1,079 European ancestry cases, 1,970 European ancestry controls, 911 African American cases, 941 African American controls	7,178 East Asian ancestry cases, 6,525 East Asian ancestry controls, 214 South East Asian ancestry cases, 557 South East Asian ancestry controls, 315 South Asian ancestry cases, 669 South Asian ancestry controls, 8,205 European ancestry cases, 7,713 European ancestry controls, 1,470 Hispanic cases, 1,240 Hispanic controls	7q31.33	NR	rs11771617-?	NR	1E-6	(AA)	3.12	[NR]	Affymetrix, Illumina [NR] (imputed)	N
1541	chr7	125391644	125391645	rs1419607	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	7q31.33	LOC646841	rs1419607-G	0.372	7E-6	(IL6 )	0.03	[NR] pg/mL increase	Illumina [899892]	N
1541	chr7	125435048	125435049	rs73720034	27622933	Li QS	2016-09-13	Transl Psychiatry	Analysis of 23andMe antidepressant efficacy survey data: implication of circadian rhythm and neuroplasticity in bupropion response.	Response to selective serotonin reuptake inhibitors and depression	6,348 European ancestry responder cases, 191,357 European ancestry healthy controls	NA	7q31.33	POT1, GRM8	rs73720034-?		1E-6		1.256	[1.142-1.381]	Illumina [~ 12000000] (imputed)	N
1542	chr7	125460647	125460648	rs7458938	25461247	Lehmann DS	2015-02-01	Pharmacogenet Genomics	Genome-wide association study of virologic response with efavirenz-containing or abacavir-containing regimens in AIDS clinical trials group protocols.	Response to efavirenz-containing treatment in HIV 1 infection (virologic failure)	Up to 737 European ancestry individuals, Up to 545 Black individuals, Up to 314 Hispanic individuals	NA	7q31.33	NR	rs7458938-A	NR	2E-7	(phenotype 2)	1.96	[NR]	Illumina [> 8000000] (imputed)	N
1542	chr7	125489837	125489839	rs148931567	30920136	Stapleton CP	2019-02-27	Am J Transplant	The impact of donor and recipient common clinical and genetic variation on estimated glomerular filtration rate in a European renal transplant population.	Estimated glomerular filtration rate after 1 year in renal transplantation (donor effect)	Up to 4,475 European ancestry individuals	NA	7q31.33	intergenic	rs148931567-A	NR	2E-6				Illumina [up to 3791089] (imputed)	N
1542	chr7	125556492	125556493	rs6972194	31311600	Namjou B	2019-07-17	BMC Med	GWAS and enrichment analyses of non-alcoholic fatty liver disease identify new trait-associated genes and pathways across eMERGE Network.	Liver fibrosis in non-alcoholic fatty liver disease	235 European ancestry individuals	NA	7q31.33	intergenic	rs6972194-A	0.313853	9E-6		0.48495	[0.28-0.69] unit increase	NR [7263501] (imputed)	N
1543	chr7	125610712	125610713	rs183464040	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	7q31.33	Intergenic	rs183464040-G	0.999	2E-8	(AA)	0.622	unit increase	Illumina [NR] (imputed)	N
1543	chr7	125652598	125652599	rs191729664	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	7q31.33	Intergenic	rs191729664-T	0.999	3E-9	(AA)	0.671	unit increase	Illumina [NR] (imputed)	N
1544	chr7	125805258	125805259	rs73220984	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (hospitalized covid vs population)	613 European ancestry cases, 680,416 European ancestry controls, 140 Hispanic or Latin American cases, 94,327 Hispanic or Latin American controls, 49 Black or African American cases, 22,410 Black or African American controls	NA	7q31.33		rs73220984-?	NR	8E-7		0.3995203	[0.24-0.56] unit decrease	Illumina [9875426] (imputed)	N
1545	chr7	125839749	125839750	rs500976	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling hurt	372,047 European ancestry individuals	NA	7q31.33	NR	rs500976-T	0.492958	2E-11		6.72	z score increase	NR [10847151] (imputed)	N
1545	chr7	125869121	125869122	rs2687481	25060954	Wolber LE	2014-07-24	Hum Mol Genet	Salt-inducible kinase 3, SIK3, is a new gene associated with hearing.	Hearing function	1,022 European ancestry individuals, 280 Carlantino (founder/genetic isolate) individuals, 1,097 Friuli Venezia Giulia (founder/genetic isolate) individuals, 804 Korcula (founder/genetic isolate) individuals, 497 Split (founder/genetic isolate) individuals, 421 Cilento (founder/genetic isolate) individuals, 470 Talana (founder/genetic isolate) individuals, 348 Silk Road individuals	NA	7q31.33	GRM8, LOC646837	rs2687481-G	NR	1E-7	(PC1)			Affymetrix, Illumina [> 2300000] (imputed)	N
1545	chr7	125896747	125896748	rs117982730	24322204	Winham SJ	2013-12-10	Mol Psychiatry	Genome-wide association study of bipolar disorder accounting for effect of body mass index identifies a new risk allele in TCF7L2.	Bipolar disorder (body mass index interaction)	388 European ancestry cases, 1,020 European ancestry controls	NA	7q31.33	NR	rs117982730-?	NR	4E-6				NR [up to 8466825] (imputed)	N
1545	chr7	125921870	125921871	rs145127301	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	7q31.33	NR	rs145127301-?	NR	3E-8				Illumina [7760689] (imputed)	N
1546	chr7	126011744	126011745	rs11974286	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling hurt	372,047 European ancestry individuals	NA	7q31.33	GRM8	rs11974286-A	0.46119	1E-11		6.78	z score decrease	NR [10847151] (imputed)	N
1546	chr7	126043682	126043683	rs1345259	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	7q31.33	GRM8	rs1345259-A	0.378841	5E-9		5.83	z score increase	NR [10847151] (imputed)	N
1546	chr7	126089318	126089319	rs13240504	25387707	Vaidyanathan U	2014-12-01	Psychophysiology	Heritability and molecular genetic basis of antisaccade eye tracking error rate: a genome-wide association study.	Anti-saccade response	4,469 European ancestry twins and their parents	NA	7q31.33	GRM8	rs13240504-?	NR	5E-6		0.032	[0.018-0.046] unit increase	Illumina [527829]	N
1547	chr7	126123305	126123306	rs1833070	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	7q31.33	NR	rs1833070-A	0.362563296767922	4E-8		0.008426544	[0.0054-0.0114] unit decrease	NR [NR]	N
1547	chr7	126123305	126123306	rs1833070	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	7q31.33	NR	rs1833070-A	0.362563296767922	5E-8		0.0053713396	[0.0034-0.0073] unit decrease	NR [NR]	N
1547	chr7	126123305	126123306	rs1833070	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	7q31.33	NR	rs1833070-A	NR	3E-9		5.934	z score decrease	Affymetrix [10847151] (imputed)	N
1547	chr7	126123305	126123306	rs1833070	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Experiencing mood swings	373,733 European ancestry individuals	NA	7q31.33	GRM8	rs1833070-A	0.361165	4E-8		5.48	z score decrease	NR [10847151] (imputed)	N
1547	chr7	126166985	126166986	rs2237738	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	7q31.33	NR	rs2237738-A	0.379742	3E-8		5.52	z score increase	NR [10847151] (imputed)	N
1547	chr7	126167036	126167037	rs2237739	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling hurt	372,047 European ancestry individuals	NA	7q31.33	GRM8	rs2237739-A	0.37295	7E-11		6.51	z score decrease	NR [10847151] (imputed)	N
1547	chr7	126174846	126174847	rs2040510	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	7q31.33	ZNF800	rs2040510-?	NR	3E-6	(fum; mal; alpha keto)	0.21054424	[0.12-0.3] unit increase	Affymetrix [at least 2500000] (imputed)	N
1547	chr7	126183235	126183236	rs1990247	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	7q31.33	GRM8	rs1990247-T	0.1611	6E-6		0.0561	[0.032-0.08] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1547	chr7	126185933	126185934	rs9641798	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	7q31.33	NR	rs9641798-A	0.384	9E-11		0.00720936	[0.005-0.0094] unit decrease	NR [9732723] (imputed)	N
1548	chr7	126240872	126240873	rs17150014	31263163	Liu CT	2019-07-01	Sci Rep	Genome-wide Association Study of Change in Fasting Glucose over time in 13,807 non-diabetic European Ancestry Individuals.	Fasting glucose change (long-term)	3,669 European ancestry individuals	NA	7q31.33	GRM8	rs17150014-A	0.826	3E-6		0.145	[0.084-0.206] unit increase	Affymetrix, Illumina [~ 25000000] (imputed)	N
1548	chr7	126289474	126289475	rs2097641	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	7q31.33		rs2097641-G	0.614	1E-8		0.007	[0.005-0.009] unit increase	NR [NR] (imputed)	N
1548	chr7	126296226	126296227	rs7811921	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	7q31.33	NR	rs7811921-T	NR	3E-8		5.54	z score decrease	Affymetrix [10847151] (imputed)	N
1548	chr7	126324590	126324591	rs17691394	20009918	Shrestha S	2010-01-01	AIDS	A genome-wide association study of carotid atherosclerosis in HIV-infected men.	Carotid atherosclerosis in HIV infection	177 European ancestry individuals	NA	7q31.33	GRM8	rs17691394-G	0.20	9E-7	(common cIMT)			Illumina [311194]	N
1549	chr7	126372506	126372507	rs2299502	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	7q31.33	NR	rs2299502-C	0.387710107036194	5E-11		0.00845657	[0.0059-0.011] unit increase	NR [NR]	N
1549	chr7	126376693	126376694	rs12706745	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	7q31.33	NR	rs12706745-T	0.387346777458321	2E-11		0.008022948	[0.0057-0.0104] unit increase	NR [NR]	N
1549	chr7	126376693	126376694	rs12706745	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	7q31.33	NR	rs12706745-T	0.387346777458321	4E-12		0.010520397	[0.0075-0.0135] unit increase	NR [NR]	N
1549	chr7	126376693	126376694	rs12706745	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	7q31.33	NR	rs12706745-T	0.387346777458321	4E-12		0.0066911485	[0.0048-0.0086] unit increase	NR [NR]	N
1549	chr7	126378254	126378255	rs10487459	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	7q31.33	NR	rs10487459-G	0.386772353308367	3E-12		0.006579592	[0.0047-0.0084] unit increase	NR [NR]	N
1549	chr7	126378841	126378842	rs727903	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Worry too long after an embarrassing experience	367,725 European ancestry individuals	NA	7q31.33	GRM8	rs727903-A	0.479377	2E-10		6.37	z score decrease	NR [10847151] (imputed)	N
1549	chr7	126379489	126379490	rs4731328	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	Worry/vulnerability (special factor of neuroticism)	270,059 British ancestry individuals	NA	7q31.33	GRM8	rs4731328-T	NR	4E-8		0.0074969	[0.0048-0.0102] unit increase	Affymetrix [18485882] (imputed)	N
1549	chr7	126379489	126379490	rs4731328	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	7q31.33		rs4731328-?	NR	3E-12				NR [~ 8900000] (imputed)	N
1549	chr7	126382538	126382539	rs35048193	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	7q31.33	NR	rs35048193-T	NR	2E-14		7.635	z score increase	Affymetrix [10847151] (imputed)	N
1549	chr7	126382961	126382962	rs34351088	31972866	Nagel M	2020-01-23	Acta Psychiatr Scand	Genome-wide association study of the sensitivity to environmental stress and adversity (SESA) neuroticism cluster.	Sensitivity to environmental stress and adversity	351,827 European ancestry individuals	NA	7q31.33	NR	rs34351088-C	NR	6E-17		0.01946	NR unit increase	NR [7259579]	N
1549	chr7	126382968	126382969	rs34548930	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling hurt	372,047 European ancestry individuals	NA	7q31.33	GRM8	rs34548930-C	0.482404	1E-16		8.27	z score decrease	NR [10847151] (imputed)	N
1549	chr7	126385730	126385731	rs13224947	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	7q31.33	intergenic	rs13224947-A	0.47802	5E-14		7.531	z score increase	Illumina [18485882] (imputed)	N
1549	chr7	126389407	126389408	rs13226841	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Anxiety	at least 23,606 European ancestry cases, at least 113,351 European ancestry controls	624,615 European ancestry cases, 1,310,854 European ancestry controls	7q31.33	GRM8	rs13226841-T	0.4861	2E-20		0.020942729	[0.016-0.026] unit decrease	NR [9417325] (imputed)	N
1549	chr7	126389407	126389408	rs13226841	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Neuroticism	274,107 British ancestry individuals	NA	7q31.33	NR	rs13226841-C	0.4896	6E-11		0.0125	[0.0088-0.0162] unit increase	NR [8968716] (imputed)	N
1549	chr7	126389407	126389408	rs13226841	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	7q31.33	GRM8	rs13226841-T	0.476138	7E-14		7.49	z score decrease	NR [10847151] (imputed)	N
1549	chr7	126395090	126395090	rs78299451	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	7q31.33	NR	rs78299451-?		7E-9		0.0125448	[0.0083-0.0168] unit decrease	Affymetrix [19400418] (imputed)	N
1549	chr7	126429516	126429517	rs6951643	25918841	Sanchez-Juan P	2015-04-28	PLoS One	A genome wide association study links glutamate receptor pathway to sporadic Creutzfeldt-Jakob disease risk.	Creutzfeldt-Jakob disease (sporadic)	434 European ancestry cases, 1,939 European ancestry controls	1,109 European ancestry cases, 2,264 European ancestry controls	7q31.33	GRM8	rs6951643-A	0.519	2E-8		1.27	[1.17-1.38]	Affymetrix [279389]	N
1549	chr7	126430867	126430868	rs6958101	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7q31.33	NR	rs6958101-A	0.01045	2E-8	(SERPINA1)	5.206	NR unit increase	Illumina [1671387] (imputed)	N
1549	chr7	126437896	126437897	rs11971186	30617275	Erzurumluoglu AM	2019-01-07	Mol Psychiatry	Meta-analysis of up to 622,409 individuals identifies 40 novel smoking behaviour associated genetic loci.	Smoking initiation	324,851 European ancestry individuals, 21,962 South Asian ancestry individuals	up to 275,596 European ancestry individuals	7q31.33	GRM8	rs11971186-G	0.2	1E-8		0.008	[0.0021-0.0139] unit decrease (replication)	Affymetrix, Illumina [up to 1207583] (imputed)	N
1549	chr7	126437896	126437897	rs11971186	20237162	Bozaoglu K	2010-03-17	J Clin Endocrinol Metab	Chemerin, a novel adipokine in the regulation of angiogenesis.	Chemerin levels	858 Mexican American family members and individuals	NA	7q31.33	GRM8	rs11971186-?	NR	9E-6				Illumina [542944]	N
1549	chr7	126442858	126442859	rs12706746	31527586	An J	2019-09-16	Nat Commun	Gastroesophageal reflux GWAS identifies risk loci that also associate with subsequent severe esophageal diseases.	Gastroesophageal reflux disease	80,265 European and unknown ancestry cases, 305,011 European and unknown ancestry controls	NA	7q31.33	GRM8	rs12706746-A	NR	8E-9		1.0349984	[1.02-1.05]	Affymetrix, Illumina [up to 7600000] (imputed)	N
1549	chr7	126463678	126463679	rs73228917	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	7q31.33	GRM8	rs73228917-T	NR	8E-6		0.0683423	[0.038-0.098] unit increase	Illumina [13519193] (imputed)	N
1549	chr7	126478189	126478190	rs2283076	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	7q31.33		rs2283076-A	0.7786	1E-11		0.0115	[0.0082-0.0148] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1549	chr7	126478189	126478190	rs2283076	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	7q31.33	Intergenic	rs2283076-A	0.7786	4E-11	(MTAG)	0.0104	[0.0073-0.0135] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1549	chr7	126483558	126483559	rs35864494	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	7q31.33	GRM8	rs35864494-G	NR	2E-8		0.0096772	[0.0063-0.0131] unit increase	Affymetrix [18485882] (imputed)	N
1549	chr7	126483558	126483559	rs35864494	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	7q31.33	NR	rs35864494-C	NR	1E-11		6.804	z score increase	Affymetrix [10847151] (imputed)	N
1550	chr7	126488797	126488798	rs35505390	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling hurt	372,047 European ancestry individuals	NA	7q31.33	NR	rs35505390-T	0.457618	2E-13		7.33	z score increase	NR [10847151] (imputed)	N
1550	chr7	126490356	126490357	rs13242233	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	7q31.33	NR	rs13242233-T	0.45505	2E-11		6.68	z score increase	NR [10847151] (imputed)	N
1550	chr7	126493687	126493688	rs17684388	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	7q31.33	ZNF800	rs17684388-?	NR	7E-7	(fum; mal; alpha keto)	0.2949943	[0.18-0.41] unit increase	Affymetrix [at least 2500000] (imputed)	N
1550	chr7	126496512	126496513	rs2283079	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	7q31.33	intergenic	rs2283079-A	0.54175	4E-12		6.949	z score decrease	Illumina [18485882] (imputed)	N
1550	chr7	126506597	126506598	rs2106353	34187846	Ong JS	2021-06-29	Gut	Multitrait genetic association analysis identifies 50 new risk loci for gastro-oesophageal reflux, seven new loci for Barrett's oesophagus and provides insights into clinical heterogeneity in reflux diagnosis.	Gastroesophageal reflux disease	129,080 European ancestry cases, 473,524 European ancestry controls	462,753 cases, 1,127,474 controls	7q31.33	GRM8	rs2106353-G	0.77	1E-10		0.037	unit decrease	NR [2324712] (imputed)	N
1550	chr7	126526990	126526991	rs117737118	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	7q31.33	GRM8, PAX4	rs117737118-G	0.093	3E-31		1.18	[1.14-1.21]	Affymetrix, Illumina [11800000] (imputed)	N
1550	chr7	126528454	126528455	rs2021162	30850646	Tziotzios C	2019-03-08	Nat Commun	Genome-wide association study in frontal fibrosing alopecia identifies four susceptibility loci including HLA-B*07:02.	Frontal fibrosing alopecia	1,016 European ancestry cases, 4,145 European ancestry controls		7q31.33	NR	rs2021162-G	0.276	8E-6		1.29	[1.15-1.44]	Illumina [~ 8000000] (imputed)	N
1550	chr7	126541316	126541317	rs61755388	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	7q31.33		rs61755388-T	0.7878	4E-13		0.0125	[0.0092-0.0158] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1550	chr7	126553200	126553201	rs1361979	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	7q31.33		rs1361979-?	NR	1E-7				NR [~ 8900000] (imputed)	N
1550	chr7	126583520	126583521	rs10232276	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	7q31.33	Intergenic	rs10232276-T	0.78	2E-8	(MTAG)	0.0111	[0.0072-0.015] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1550	chr7	126595059	126595060	rs13224108	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	7q31.33	Intergenic	rs13224108-T	0.7875	5E-13	(MTAG)	0.0116	[0.0085-0.0147] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1551	chr7	126639603	126639604	rs17864092	20800221	Terracciano A	2010-08-25	Biol Psychiatry	Genome-wide association scan of trait depression.	Depression (quantitative trait)	3,972 Sardinian individuals, 839 European ancestry individuals	NA	7q31.33	GRM8	rs17864092-T	0.90	6E-6		0.17	[NR] unit decrease	Affymetrix, Illumina [up to 2500000] (imputed)	N
1551	chr7	126707557	126707558	rs3808123	33232274	Mohammadnejad A	2020-11-24	Aging (Albany NY)	Generalized correlation coefficient for genome-wide association analysis of cognitive ability in twins.	Cognitive function (generalized correlation coefficient)	900 Danish ancestry dizygotic twins, 272 Danish ancestry monozygotic twins	NA	7q31.33	NR	rs3808123-?	NR	5E-7			[NR]	Illumina [5779266] (imputed)	N
1551	chr7	126721230	126721231	rs2283093	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	7q31.33		rs2283093-?	NR	9E-8				NR [~ 8900000] (imputed)	N
1551	chr7	126737745	126737746	rs4141410	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	7q31.33	Intergenic	rs4141410-A	0.623	3E-15	(MTAG)	0.0146	[0.011-0.018] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1551	chr7	126737745	126737746	rs4141410	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	7q31.33	Intergenic	rs4141410-A	0.623	1E-15		0.0161	[0.012-0.02] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1551	chr7	126737745	126737746	rs4141410	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	7q31.33	Intergenic	rs4141410-A	0.6232	8E-10	(MTAG)	0.0105	[0.0072-0.0138] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1552	chr7	126790946	126790947	rs17867775	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Anti-saccade response	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	7q31.33	GRM8	rs17867775-T	0.1187	6E-6	(African)			Illumina [4404269] (imputed)	N
1553	chr7	126924703	126924704	rs17869724	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	7q31.33	NR	rs17869724-?	NR	2E-6				Affymetrix [5486770] (imputed)	N
1553	chr7	126940620	126940621	rs10259338	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	7q31.33	ZNF800	rs10259338-A	0.498	5E-9		0.0069	[0.0045-0.0093] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
1553	chr7	126945509	126945510	rs1419392	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	7q31.33		rs1419392-A	0.597657	2E-27		0.024692236	[0.02-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
1553	chr7	126947812	126947813	rs17867822	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	7q31.33	NR	rs17867822-T	NR	4E-19		0.0535	[0.042-0.065] unit decrease	Affymetrix [9000000] (imputed)	N
1553	chr7	126950532	126950533	rs36198324	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q31.33	NR	rs36198324-G	0.606899	1E-33				Affymetrix, Illumina [22063850] (imputed)	N
1553	chr7	126956865	126956866	rs11766965	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	7q31.33	NR	rs11766965-C	NR	1E-8		5.667	z score increase	Affymetrix [10847151] (imputed)	N
1553	chr7	126969197	126969198	rs2402857	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	7q31.33		rs2402857-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1553	chr7	126970045	126970046	rs11563648	27798624	Eppinga RN	2016-10-31	Nat Genet	Identification of genomic loci associated with resting heart rate and shared genetic predictors with all-cause mortality.	Resting heart rate	127,919 European ancestry individuals, 2,478 Asian ancestry individuals, 1,734 Black individuals, 684 Mixed ancestry individuals, 1,436 individuals	130,795 European ancestry individuals	7q31.33	ZNF800	rs11563648-C	0.27	4E-10		0.2311	[0.16-0.3] unit decrease	Affymetrix [19941912] (imputed)	N
1553	chr7	126997732	126997733	rs11563644	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CXCL9	5,350 Icelandic ancestry individuals	NA	7q31.33		rs11563644-C	0.06056	1E-12		0.078972	[0.057-0.101] unit increase	Illumina [7506463] (imputed)	N
1553	chr7	127006023	127006024	rs951809	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	7q31.33	NR	rs951809-A	NR	4E-10		6.249	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1554	chr7	127010335	127010336	rs17862367	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	7q31.33	ZNF800	rs17862367-A	0.113205	2E-9		0.021415258	[0.014-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1554	chr7	127014437	127014438	rs139681633	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Serum alkaline phosphatase levels	437,896 European ancestry individuals	NA	7q31.33		rs139681633-?	NR	1E-47		0.200348	[0.17-0.23] unit decrease	NR [9800000] (imputed)	N
1554	chr7	127014437	127014438	rs139681633	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	7q31.33	NR	rs139681633-C	NR	3E-27		0.1988	[0.16-0.23] unit decrease	Affymetrix [9000000] (imputed)	N
1554	chr7	127014437	127014438	rs139681633	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Serum alkaline phosphatase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	7q31.33	ZNF800	rs139681633-?		5E-10		0.2208	[0.15-0.29] unit decrease	Illumina [31500000] (imputed)	N
1554	chr7	127014437	127014438	rs139681633	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	7q31.33	ZNF800	rs139681633-C	0.00431099999999995	3E-9		0.09969656	[0.067-0.133] unit decrease	Affymetrix [93095623] (imputed)	N
1554	chr7	127014437	127014438	rs139681633	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	7q31.33	ZNF800	rs139681633-C	0.00431199999999998	2E-9		0.10081555	[0.068-0.134] unit increase	Affymetrix [93095623] (imputed)	N
1554	chr7	127015082	127015083	rs62621812	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	7q31.33		rs62621812-A	NR	7E-38		0.109	[0.092-0.126] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
1554	chr7	127015082	127015083	rs62621812	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	7q31.33		rs62621812-A	NR	2E-9		0.0539	[0.036-0.072] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
1554	chr7	127015082	127015083	rs62621812	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	7q31.33		rs62621812-A	NR	3E-9		0.0513	[0.034-0.068] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
1554	chr7	127015082	127015083	rs62621812	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cataracts	39,519 European ancestry cases, 452,358 European ancestry controls, 38,194 East Asian ancestry cases, 140,532 East Asian ancestry controls	NA	7q31.33		rs62621812-A	NR	1E-13		0.1928	[0.14-0.24] unit increase	Affymetrix, Illumina [25845331] (imputed)	N
1554	chr7	127015082	127015083	rs62621812	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	334,944 European ancestry, NR ancestry individuals	NA	7q31.33		rs62621812-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1554	chr7	127015082	127015083	rs62621812	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	38,996 female cases, 283,185 female controls, 28,848 male cases, 234,414 male controls	211,030 female cases, 1,623,785 female controls, 136,179 male cases, 1,263,461 male controls	7q31.33	ZNF800	rs62621812-A	NR	2E-12	(female)	1.1169	[1.09-1.15]	Affymetrix [9869154] (imputed)	N
1554	chr7	127015082	127015083	rs62621812	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	28,092 non-Hispanic White ancestry cases, 50,487 non-Hispanic White ancestry controls, 31,852 European ancestry cases, 428,084 European ancestry controls	NA	7q31.33	NR	rs62621812-A	NR	7E-17		1.2204		Affymetrix [9869154] (imputed)	N
1554	chr7	127015082	127015083	rs62621812	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	28,092 non-Hispanic White ancestry cases, 50,487 non-Hispanic White ancestry controls, 2,233 East Asian ancestry cases, 7,023 East Asian ancestry controls, 2,149 Hispanic/Latino cases, 6,620 Hispanic/Latino controls, 815 African American cases, 2,368 African American controls, 31,852 European ancestry cases, 428,084 European ancestry controls, 757 African ancestry cases, 7,897 African ancestry controls, 1,278 South Asian ancestry cases, 8,571 South Asian ancestry controls, 668 other admixed cases, 7,349 other admixed controls	313,278 European ancestry cases, 2,210,509 European ancestry controls, 7,715 African American cases, 120,390 African American controls, 3,934 East Asian ancestry cases, 104,766 East Asian ancestry controls, 21,408 Latino cases, 425,544 Latino controls, 874 South Asian ancestry cases, 26,037 South Asian ancestry controls	7q31.33	ZNF800	rs62621812-A	NR	5E-22		1.12	[1.1-1.14]	Affymetrix [9869154] (imputed)	N
1554	chr7	127015082	127015083	rs62621812	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	7q31.33	ZNF800	rs62621812-A	0.0204	3E-27		0.0743	[0.061-0.088] unit increase	Affymetrix [18391927] (imputed)	N
1554	chr7	127015082	127015083	rs62621812	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	244,730 European ancestry women	NA	7q31.33	ZNF800	rs62621812-A	0.02	2E-20		0.08	[0.062-0.098] unit increase	Affymetrix [18391927] (imputed)	N
1554	chr7	127015082	127015083	rs62621812	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	205,513 European ancestry men	NA	7q31.33	ZNF800	rs62621812-A	0.02	5E-10		0.06	[0.04-0.08] unit increase	Affymetrix [18391927] (imputed)	N
1554	chr7	127015082	127015083	rs62621812	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels adjusted for BMI	56,708 European ancestry, African American or Afro-Caribbean, East Asian ancestry, Hispanic or Latin American individuals		7q31.33	ZNF800	rs62621812-A	0.028	2E-12		0.127	[0.092-0.162] unit decrease	Illumina [232237]	N
1554	chr7	127015082	127015083	rs62621812	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels adjusted for BMI	49,830 European ancestry individuals		7q31.33	ZNF800	rs62621812-A	0.031	3E-12		0.127	[0.092-0.162] unit decrease	Illumina [204609]	N
1554	chr7	127015082	127015083	rs62621812	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels adjusted for BMI	32,886 European ancestry, African American or Afro-Caribbean, East Asian ancestry, Hispanic or Latin American women		7q31.33	ZNF800	rs62621812-A	0.027	2E-7		0.125	[0.078-0.172] unit decrease	Illumina [227473]	N
1554	chr7	127015082	127015083	rs62621812	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels adjusted for BMI	27,947 European ancestry women		7q31.33	ZNF800	rs62621812-A	0.032	2E-7		0.126	[0.079-0.173] unit decrease	Illumina [193169]	N
1554	chr7	127015082	127015083	rs62621812	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels adjusted for BMI	23,822 European ancestry, African American or Afro-Caribbean, East Asian ancestry, Hispanic or Latin American men		7q31.33	ZNF800	rs62621812-A	0.029	7E-8		0.148	[0.095-0.201] unit decrease	Illumina [220721]	N
1554	chr7	127015082	127015083	rs62621812	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels adjusted for BMI	21,883 European ancestry men		7q31.33	ZNF800	rs62621812-A	0.031	1E-7		0.146	[0.091-0.201] unit decrease	Illumina [185190]	N
1554	chr7	127015082	127015083	rs62621812	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels	56,802 European ancestry, African American or Afro-Caribbean, East Asian ancestry, Hispanic or Latin American individuals		7q31.33	ZNF800	rs62621812-A	0.028	8E-8		0.097	[0.062-0.132] unit decrease	Illumina [232255]	N
1554	chr7	127015082	127015083	rs62621812	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels	49,909 European ancestry individuals		7q31.33	ZNF800	rs62621812-A	0.031	8E-8		0.098	[0.063-0.133] unit decrease	Illumina [204641]	N
1554	chr7	127015082	127015083	rs62621812	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	7q31.33	ZNF800	rs62621812-A	0.020257	4E-10		0.051154286	[0.035-0.067] unit increase	Affymetrix [93095623] (imputed)	N
1554	chr7	127015082	127015083	rs62621812	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	7q31.33	ZNF800	rs62621812-A	0.020295	2E-14		0.06166026	[0.046-0.077] unit decrease	Affymetrix [93095623] (imputed)	N
1554	chr7	127015082	127015083	rs62621812	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	7q31.33	ZNF800	rs62621812-A	0.020277	7E-18		0.069546215	[0.054-0.085] unit increase	Affymetrix [93095623] (imputed)	N
1554	chr7	127015082	127015083	rs62621812	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	7q31.33	ZNF800	rs62621812-A	0.0202870000000001	4E-12		0.055907756	[0.04-0.072] unit increase	Affymetrix [93095623] (imputed)	N
1554	chr7	127015082	127015083	rs62621812	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q31.33	NR	rs62621812-A	0.0199339	1E-13				Affymetrix, Illumina [23472807] (imputed)	N
1554	chr7	127015082	127015083	rs62621812	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	7q31.33	NR	rs62621812-A	0.020688	3E-16		0.055993	[0.043-0.069] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1554	chr7	127015082	127015083	rs62621812	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	7q31.33	NR	rs62621812-G	0.979683	3E-8		0.0386871	[0.025-0.052] unit decrease	Affymetrix [15000001]	N
1554	chr7	127015082	127015083	rs62621812	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	7q31.33	NR	rs62621812-A	0.020171999999999968	1E-8		0.0533948	[0.033-0.073] unit increase	Affymetrix [16580851] (imputed)	N
1554	chr7	127015082	127015083	rs62621812	31816047	Boutin TS	2019-12-09	Hum Mol Genet	Insights into the genetic basis of retinal detachment.	Cataracts (operation)	21,679 British ancestry cases, 387,283 British ancestry controls	NA	7q31.33	ZNF800	rs62621812-?	0.021	2E-8		1.1984645	[1.12-1.29]	Affymetrix [NR] (imputed)	N
1554	chr7	127015082	127015083	rs62621812	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	7q31.33	NR	rs62621812-A	0.0201384	1E-13		0.187755	[0.14-0.24] unit increase	Affymetrix [17914406] (imputed)	N
1554	chr7	127015082	127015083	rs62621812	31666285	Olafsson S	2019-10-30	Cancer Epidemiol Biomarkers Prev	Common and rare sequence variants influencing tumor biomarkers in blood.	Serum alkaline phosphatase levels	162,774 Icelandic ancestry individuals	NA	7q31.33	ZNF800	rs62621812-A	0.025	7E-9		0.08	[0.10-0.05] unit decrease	Illumina [NR] (imputed)	N
1554	chr7	127015082	127015083	rs62621812	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	7q31.33	ZNF800	rs62621812-G	0.981514	7E-45		0.0934927	[0.08-0.107] unit increase	NR [13737936] (imputed)	N
1554	chr7	127015082	127015083	rs62621812	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	7q31.33		rs62621812-?	NR	7E-44				NR [~ 8900000] (imputed)	N
1554	chr7	127015082	127015083	rs62621812	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	7q31.33		rs62621812-?	NR	6E-10				NR [~ 8900000] (imputed)	N
1554	chr7	127015082	127015083	rs62621812	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	7q31.33		rs62621812-?	NR	7E-40		0.0953649	[0.081-0.11] unit increase	Affymetrix [20259828] (imputed)	N
1554	chr7	127015082	127015083	rs62621812	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	7q31.33	ZNF800	rs62621812-G	0.978953	1E-7	(women)	0.0852672	[0.054-0.117] unit increase	NR [17166351] (imputed)	N
1554	chr7	127015082	127015083	rs62621812	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	7q31.33	ZNF800	rs62621812-G	0.978356	3E-16		0.0887016	[0.066-0.111] unit increase	NR [17166351] (imputed)	N
1554	chr7	127015082	127015083	rs62621812	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	7q31.33	ZNF800	rs62621812-G	0.977672	7E-10	(men)	0.0986143	[0.065-0.132] unit increase	NR [17166351] (imputed)	N
1554	chr7	127016216	127016217	rs6979232	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	7q31.33	NR	rs6979232-A	NR	2E-10		6.377	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1554	chr7	127019058	127019058	rs534049724	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	7q31.33		rs534049724-?	NR	3E-23		0.112862	[0.089-0.136] unit increase	Affymetrix [20259828] (imputed)	N
1554	chr7	127031916	127031917	rs28729203	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	7q31.33	ZNF800	rs28729203-G	0.607344	4E-9		0.0132199	[0.0088-0.0176] unit increase	Affymetrix [93095623] (imputed)	N
1554	chr7	127031916	127031917	rs28729203	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	7q31.33		rs28729203-?	NR	4E-26				NR [~ 8900000] (imputed)	N
1554	chr7	127037414	127037415	rs61232477	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	7q31.33	NR	rs61232477-C	0.604589	7E-35		0.02446	[0.021-0.028] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
1554	chr7	127058952	127058953	rs17866443	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	7q31.33	NR	rs17866443-C	0.8385	9E-47		0.2003	[0.17-0.23] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1554	chr7	127070484	127070485	rs7802895	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	7q31.33	ZNF800	rs7802895-A	0.135	2E-8		0.0096	[0.0063-0.0129] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
1554	chr7	127080376	127080377	rs10247993	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	7q31.33	NR	rs10247993-T	NR	2E-8		5.589	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1554	chr7	127082496	127082497	rs4731365	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	7q31.33	NR	rs4731365-G	0.388668	4E-10		0.04025498	[0.028-0.053] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1554	chr7	127082496	127082497	rs4731365	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	7q31.33	NR	rs4731365-A	NR	6E-12		6.883	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1554	chr7	127102680	127102681	rs61544985	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	7q31.33	AC000124.1	rs61544985-A	NR	1E-11		6.753	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1554	chr7	127118405	127118406	rs72607741	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	7q31.33		rs72607741-A	NR	5E-11		0.0339	[0.024-0.044] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1554	chr7	127118405	127118406	rs72607741	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	7q31.33		rs72607741-A	0.091697	5E-11		0.0338525	[0.024-0.044] unit decrease	Illumina [13479924] (imputed)	N
1554	chr7	127118405	127118406	rs72607741	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	7q31.33		rs72607741-A	NR	3E-8		0.033	[0.021-0.045] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
1554	chr7	127118405	127118406	rs72607741	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	153,512 East Asian ancestry individuals	NA	7q31.33		rs72607741-A	0.091791	3E-8		0.0329522	[0.021-0.045] unit decrease	Illumina [13479135] (imputed)	N
1554	chr7	127118405	127118406	rs72607741	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	7q31.33		rs72607741-A	NR	5E-12		0.0418	[0.03-0.054] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1554	chr7	127118405	127118406	rs72607741	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	163,835 East Asian ancestry individuals	NA	7q31.33		rs72607741-A	0.091677	5E-12		0.0418318	[0.03-0.054] unit decrease	Illumina [13479178] (imputed)	N
1554	chr7	127130000	127130001	rs141322890	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	7q31.33	AC000124.1	rs141322890-A	NR	4E-11		0.020602515	[0.014-0.027] unit decrease	Affymetrix [NR]	N
1555	chr7	127147627	127147628	rs12671806	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Verbal-numerical reasoning	171,304 British ancestry individuals	NA	7q32.1		rs12671806-?	NR	4E-13				NR [7857346] (imputed)	N
1555	chr7	127147762	127147763	rs6978712	25317111	Seo I	2014-09-30	Genomics Inform	Genome-wide association study of medication adherence in chronic diseases in the korean population.	Medication adherence in chronic diseases	155 Korean ancestry medication non-adherent diabetes cases, 80 Korean ancestry medication non-adherent hypertensive cases, 240 Korean ancestry medication adherent diabetes cases, 827 Korean ancestry medication adherent hypertensive cases	NA	7q32.1	GCC1	rs6978712-A	0.175	5E-7		2.02	[1.53-2.68]	NR [349184]	N
1555	chr7	127149031	127149032	rs10239419	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	7q32.1	Intergenic	rs10239419-A	0.6897	1E-8	(MTAG)	0.008	[0.0053-0.0107] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1555	chr7	127151322	127151323	rs1592365	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling worry	372,869 European ancestry individuals	NA	7q32.1	GCC1	rs1592365-A	0.466448	1E-8		5.664	unit increase	NR [10847151] (imputed)	N
1555	chr7	127158356	127158357	rs10273635	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	7q32.1	AC000124.1	rs10273635-T	NR	9E-9		5.753	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1555	chr7	127164957	127164958	rs6467136	22158537	Cho YS	2011-12-11	Nat Genet	Meta-analysis of genome-wide association studies identifies eight new loci for type 2 diabetes in east Asians.	Type 2 diabetes	5,999 East Asian ancestry cases, 9,001 East Asian ancestry controls, 794 Malay ancestry cases, 1,240 Malay ancestry controls, 159 Filipino ancestry cases, 1,624 Filipino ancestry controls	18,127 East Asian ancestry cases, 17,746 East Asian ancestry controls	7q32.1	PAX4, GCC1	rs6467136-G	0.79	5E-11		1.11	[1.07-1.14]	Affymetrix, Illumina [2626356] (imputed)	N
1555	chr7	127169896	127169897	rs10282411	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	7q32.1	Intergenic	rs10282411-T	0.5585	5E-9	(MTAG)	0.0135	[0.009-0.018] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1555	chr7	127169896	127169897	rs10282411	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	7q32.1	Intergenic	rs10282411-T	0.5585	7E-10		0.0177	[0.012-0.023] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
1555	chr7	127169896	127169897	rs10282411	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	7q32.1	NR	rs10282411-T	NR	1E-11		6.797	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1555	chr7	127169896	127169897	rs10282411	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	7q32.1	AC000124.1	rs10282411-T	NR	1E-11		0.021024052	[0.015-0.027] unit decrease	Affymetrix [NR]	N
1555	chr7	127170014	127170015	rs4731366	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	7q32.1		rs4731366-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1555	chr7	127170014	127170015	rs4731366	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	7q32.1	NR	rs4731366-T	NR	2E-11		6.697	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1555	chr7	127170014	127170015	rs4731366	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	7q32.1	AC000124.1	rs4731366-T	NR	3E-11		0.023401752	[0.017-0.03] unit decrease	Affymetrix [NR]	N
1555	chr7	127174678	127174679	rs17150996	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	7q32.1	GCC1	rs17150996-?		4E-8				Affymetrix, Illumina [NR] (imputed)	N
1555	chr7	127178161	127178162	rs4731367	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental longevity (mother's age at death)	52,776 middle-aged British individuals	NA	7q32.1	NR	rs4731367-?	NR	9E-6		0.023252	[0.013-0.033] unit increase	Affymetrix [9658292] (imputed)	N
1555	chr7	127179492	127179493	rs11764631	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	7q32.1	GCC1	rs11764631-A	NR	2E-8		5.58	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1555	chr7	127180666	127180667	rs4731368	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	7q32.1	NR	rs4731368-A	NR	2E-8		5.596	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1555	chr7	127180666	127180667	rs4731368	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	7q32.1	GCC1	rs4731368-A	NR	2E-9		0.022113621	[0.015-0.029] unit increase	Affymetrix [NR]	N
1555	chr7	127186448	127186449	rs4728071	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	7q32.1	GCC1	rs4728071-T	NR	4E-8		0.020858755	[0.013-0.028] unit increase	Affymetrix [NR]	N
1555	chr7	127201663	127201664	rs62481355	26818947	Imamura M	2016-01-28	Nat Commun	Genome-wide association studies in the Japanese population identify seven novel loci for type 2 diabetes.	Type 2 diabetes	15,463 Japanese ancestry cases, 26,183 Japanese ancestry controls	20,490 East Asian ancestry cases, 22,922 East Asian ancestry controls, 38,947 European ancestry cases, 121,903 European ancestry controls, 10,587 South Asian ancestry cases, 14,378 South Asian ancestry controls, 3,848 Mexican/Latino cases, 4,366 Mexican/Latino controls	7q32.1	GCC1	rs62481355-T	NR	3E-7	(Japanese)	1.0909	[1.05521-1.12779]	Illumina [7521072] (imputed)	N
1555	chr7	127203575	127203576	rs6976685	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	7q32.1	NR	rs6976685-?	NR	5E-8		5.435	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1555	chr7	127204064	127204065	rs10954160	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	7q32.1	NR	rs10954160-A	NR	6E-10		6.188	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1555	chr7	127233067	127233068	rs3757791	33562295	Coltell O	2021-02-07	Nutrients	Circulating Adiponectin and Its Association with Metabolic Traits and Type 2 Diabetes: Gene-Diet Interactions Focusing on Selected Gene Variants and at the Genome-Wide Level in High-Cardiovascular Risk Mediterranean Subjects.	Adiponectin levels	606 European ancestry high cardiovascular risk elderly women	NA	7q32.1	FSCN3	rs3757791-T	0.111	7E-6		0.384	[NR] unit increase	Illumina [625127]	N
1555	chr7	127237311	127237312	rs806215	26818947	Imamura M	2016-01-28	Nat Commun	Genome-wide association studies in the Japanese population identify seven novel loci for type 2 diabetes.	Type 2 diabetes	15,463 Japanese ancestry cases, 26,183 Japanese ancestry controls	20,490 East Asian ancestry cases, 22,922 East Asian ancestry controls, 38,947 European ancestry cases, 121,903 European ancestry controls, 10,587 South Asian ancestry cases, 14,378 South Asian ancestry controls, 3,848 Mexican/Latino cases, 4,366 Mexican/Latino controls	7q32.1	FSCN3, PAX4	rs806215-C	NR	8E-10	(Japanese)	1.10969	[1.07348-1.14712]	Illumina [7521072] (imputed)	N
1555	chr7	127240093	127240094	rs806219	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	7q32.1	NR	rs806219-T	NR	5E-10		6.23	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1555	chr7	127246902	127246903	rs10229583	23532257	Ma RC	2013-03-27	Diabetologia	Genome-wide association study in a Chinese population identifies a susceptibility locus for type 2 diabetes at 7q32 near PAX4.	Type 2 diabetes	684 Han Chinese ancestry cases, 955 Han Chinese ancestry controls	18,954 East Asian ancestry cases, 18,029 East Asian ancestry controls, 794 Malay ancestry cases, 1,204 Malay ancestry controls, 977 Indian ancestry cases, 1,169 Indian ancestry controls, 8,130 European ancestry cases, 38,987 European ancestry controls	7q32.1	ARF5, PAX4, SND1	rs10229583-G	0.825	2E-10	(East Asian)	1.14	[1.09-1.19]	Illumina [2925090] (imputed)	N
1555	chr7	127249658	127249659	rs61160304	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	7q32.1		rs61160304-T	NR	3E-11		0.0538	[0.038-0.07] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
1555	chr7	127253549	127253550	rs2233580	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	7q32.1		rs2233580-T	0.086155362	6E-105		0.34405524	[0.31-0.38] unit increase	Illumina [13429769] (imputed)	N
1555	chr7	127253549	127253550	rs2233580	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	7q32.1		rs2233580-T	NR	6E-105		0.3441	[0.31-0.38] unit increase	Affymetrix, Illumina [25845091] (imputed)	N
1555	chr7	127253549	127253550	rs2233580	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	7q32.1		rs2233580-T	NR	1E-8		0.0391	[0.026-0.052] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
1555	chr7	127253549	127253550	rs2233580	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	111,667 East Asian ancestry individuals	NA	7q32.1		rs2233580-T	0.093996	1E-8		0.0390841	[0.026-0.052] unit decrease	Illumina [13471903] (imputed)	N
1555	chr7	127253549	127253550	rs2233580	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	7q32.1		rs2233580-T	0.09282454	1E-66		0.29393116	[0.26-0.33] unit increase	Illumina [13134967] (imputed)	N
1555	chr7	127253549	127253550	rs2233580	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	7q32.1		rs2233580-T	NR	1E-66		0.2939	[0.26-0.33] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1555	chr7	127253549	127253550	rs2233580	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	71,221 East Asian ancestry individuals	NA	7q32.1		rs2233580-T	0.096185	4E-21		0.0669474	[0.053-0.081] unit increase	Illumina [13466143] (imputed)	N
1555	chr7	127253549	127253550	rs2233580	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	7q32.1		rs2233580-T	NR	4E-21		0.0669	[0.053-0.081] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
1555	chr7	127253549	127253550	rs2233580	32794382	Cho SB	2020-07-28	Diabetes Metab J	Exome Chip Analysis of 14,026 Koreans Reve-als Known and Newly Discovered Genetic Loci Associated with Type 2 Diabetes Mellitus.	Type 2 diabetes	14,026 Korean ancestry individuals	NA	7q32.1	PAX4	rs2233580-A	0.07	2E-10		1.48	[1.31-1.67]	Illumina [up to 242901]	N
1555	chr7	127253549	127253550	rs2233580	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	46,511 Asian ancestry cases, 169,776 Asian ancestry controls	NA	7q32.1	NR	rs2233580-C	0.9085	1E-74		0.2764	[0.25-0.31] unit decrease	Affymetrix, Illumina [1077427] (imputed)	N
1555	chr7	127253549	127253550	rs2233580	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	7q32.1		rs2233580-T	0.088031697	6E-90		1.3345873	[1.297564889-1.372666019]	Illumina [8919992] (imputed)	N
1555	chr7	127253549	127253550	rs2233580	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	7q32.1	PAX4	rs2233580-T	0.086	3E-132		1.34	[1.31-1.37]	Affymetrix, Illumina [11800000] (imputed)	N
1555	chr7	127253549	127253550	rs2233580	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	7q32.1	GCC1, PAX4	rs2233580-T	0.09	4E-74		1.32	1.28-1.36	Illumina [12557761] (imputed)	N
1555	chr7	127253549	127253550	rs2233580	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes (adjusted for BMI)	48,286 European ancestry cases, 250,671 European ancestry controls, 33,126 African American, East Asian, Hispanic/Latino or South Asian cases, 120,161 African American, East Asian, Hispanic/Latino or South Asian controls	NA	7q32.1	PAX4	rs2233580-T	0.0294	4E-13		1.38	[1.26-1.51]	Affymetrix, Illumina [247470]	N
1555	chr7	127253549	127253550	rs2233580	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes	48,286 European ancestry cases, 250,671 European ancestry controls, 33,126 African American, East Asian, Hispanic/Latino or South Asian cases, 120,161 African American, East Asian, Hispanic/Latino or South Asian controls	NA	7q32.1	PAX4	rs2233580-T	0.0294	2E-12		1.36	[1.25-1.48]	Affymetrix, Illumina [247470]	N
1555	chr7	127253550	127253551	rs3824004	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	7q32.1		rs3824004-T	NR	9E-13		1.1904252	[1.13487927676633-1.2486895731033]	Illumina [8919992] (imputed)	N
1555	chr7	127255284	127255285	rs698406	31609978	Huang L	2019-10-14	PLoS Genet	Genetic factors define CPO and CLO subtypes of nonsyndromicorofacial cleft.	Nonsyndromic cleft palate	930 Southern Han Chinese ancestry cases, 5,048 Southern Han Chinese ancestry controls	1,141 Han Chinese ancestry cases, 5,097 Han Chinese ancestry controls	7q32.1	PAX4	rs698406-C	0.607	6E-9		1.2315271	NR	Illumina [at least 870261] (imputed)	N
1555	chr7	127258383	127258384	rs3757787	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 1 diabetes	6,447 European ancestry cases, 451,248 European ancestry controls, 1,219 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	7q32.1		rs3757787-T	NR	1E-8		0.4363	[0.29-0.59] unit increase	Affymetrix, Illumina [25837106] (imputed)	N
1555	chr7	127258383	127258384	rs3757787	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 1 diabetes	1,219 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	7q32.1		rs3757787-T	0.088020982	1E-8		0.43625864	[0.29-0.59] unit increase	Illumina [13421694] (imputed)	N
1555	chr7	127268805	127268806	rs806188	32989287	Cuellar-Partida G	2020-09-28	Nat Hum Behav	Genome-wide association study identifies 48 common genetic variants associated with handedness.	Left-handedness	1,766,671 European ancestry individuals	NA	7q32.1	PAX4	rs806188-T	0.3181	6E-10		1.0226481	[NR]	Illumina [12493444] (imputed)	N
1556	chr7	127275448	127275449	rs17716738	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	7q32.1	NR	rs17716738-?	NR	6E-6		0.007904	[0.0045-0.0113] unit decrease	Affymetrix [805426] (imputed)	N
1556	chr7	127292020	127292021	rs73234874	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	7q32.1	NR	rs73234874-A	0.2929	2E-10				NR [9056863] (imputed)	N
1556	chr7	127300667	127300668	rs806169	33888516	Zheng T	2021-04-22	Gut	Genome-wide analysis of 944 133 individuals provides insights into the etiology of haemorrhoidal disease.	Haemorrhoidal disease	218,920 European ancestry cases, 725,213 European ancestry controls	NA	7q32.1	SND1	rs806169-?	0.3257	4E-11		0.97	[0.96-0.98]	Affymetrix, Illumina [8494288] (imputed)	N
1556	chr7	127305517	127305518	rs13221709	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	7q32.1		rs13221709-A	0.28	4E-20		9.2	z score increase	Affymetrix [9061022] (imputed)	N
1556	chr7	127305517	127305518	rs13221709	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	7q32.1		rs13221709-A	0.28	1E-10		6.46	z score increase	Affymetrix [9061022] (imputed)	N
1556	chr7	127309933	127309934	rs806166	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling worry	372,869 European ancestry individuals	NA	7q32.1	NR	rs806166-T	0.3224	3E-9		5.949	unit decrease	NR [10847151] (imputed)	N
1556	chr7	127322613	127322614	rs712707	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	7q32.1	SND1	rs712707-T	0.327	7E-17		0.0105	[0.008-0.013] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
1556	chr7	127331269	127331270	rs113347729	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	7q32.1		rs113347729-T	NR	9E-10		0.0165	[0.011-0.022] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
1556	chr7	127344117	127344118	rs3808100	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	7q32.1	PAX4	rs3808100-?	NR	1E-6	(indole-3-propionate)	1.2290449	[0.73-1.73] unit increase	Affymetrix [at least 2500000] (imputed)	N
1556	chr7	127345991	127345992	rs759843	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	7q32.1	NR	rs759843-A	0.402584	7E-11		0.041796558	[0.029-0.054] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1556	chr7	127372424	127372425	rs3808093	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	7q32.1	NR	rs3808093-A	NR	4E-10		6.251	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1556	chr7	127378651	127378652	rs17718395	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	7q32.1	NR	rs17718395-?	NR	4E-6		0.0080441	[0.0046-0.0115] unit decrease	Affymetrix [805426] (imputed)	N
1556	chr7	127382154	127382155	rs17151229	32060260	Campos AI	2020-02-14	Nat Commun	Insights into the aetiology of snoring from observational and genetic investigations in the UK Biobank.	Snoring	152,302 British ancestry cases, 256,015 British ancestry controls	NA	7q32.1	NR	rs17151229-G	NR	2E-9		0.0065399	[0.0044-0.0087] unit decrease	NR [11010159] (imputed)	N
1556	chr7	127382154	127382155	rs17151229	32060260	Campos AI	2020-02-14	Nat Commun	Insights into the aetiology of snoring from observational and genetic investigations in the UK Biobank.	Snoring	151,836 British ancestry cases, 255,230 British ancestry controls	NA	7q32.1	NR	rs17151229-G	NR	7E-8	(adjusted for BMI)	0.00583	[0.0037-0.008] unit decrease	NR [11010159] (imputed)	N
1556	chr7	127382264	127382265	rs6467145	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	7q32.1	SND1	rs6467145-A	0.5874	6E-11		0.015750142	[0.011-0.02] unit decrease	Affymetrix [11515109] (imputed)	N
1556	chr7	127392093	127392094	rs73234897	34518958	Sanders AR	2021-09-13	Arch Sex Behav	Genome-Wide Linkage and Association Study of Childhood Gender Nonconformity in Males.	Childhood gender nonconformity	409 European ancestry concordant male sibling pairs	NA	7q32.1		rs73234897-A	0.857	2E-6		0.079	[0.046-0.112] unit decrease	Affymetrix [6030650] (imputed)	N
1556	chr7	127398247	127398248	rs73234901	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	7q32.1	SND1	rs73234901-A	NR	2E-10		6.336	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1556	chr7	127398554	127398556	rs200519675	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	7q32.1		rs200519675-C	NR	2E-8		0.0133	[0.0086-0.018] unit increase	Affymetrix, Illumina [20528270] (imputed)	N
1557	chr7	127406715	127406716	rs181624422	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Coffee consumption	335,909 European ancestry individuals	39,924 European ancestry individuals	7q32.1	SND1	rs181624422-C	0.9695	7E-6		0.0199	[0.011-0.029] unit increase	Affymetrix [~ 7740000] (imputed)	N
1557	chr7	127430973	127430974	rs35940771	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	7q32.1		rs35940771-T	0.4065	4E-9		0.09587895	[0.064-0.128] mmHg decrease	Affymetrix, Illumina [242866] (imputed)	N
1557	chr7	127457227	127457228	rs325442	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	7q32.1	SND1	rs325442-A	0.3981	6E-10		0.0021	[0.0015-0.0027] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
1557	chr7	127458008	127458009	rs17151377	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling worry	372,869 European ancestry individuals	NA	7q32.1	NR	rs17151377-A	0.338376	2E-9		5.989	unit increase	NR [10847151] (imputed)	N
1557	chr7	127505754	127505755	rs35154268	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	7q32.1	SND1	rs35154268-A	0.7187	2E-11		0.0022	[0.0014-0.003] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
1557	chr7	127509069	127509070	rs13231367	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	7q32.1	SND1	rs13231367-G	0.704766	2E-9		0.019973	[0.013-0.026] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
1558	chr7	127538558	127538559	rs3757771	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	7q32.1	NR	rs3757771-T	NR	9E-9		5.755	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1558	chr7	127540376	127540377	rs13246286	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	7q32.1	SND1, LRRC4	rs13246286-?		2E-11				NR [7428630] (imputed)	N
1558	chr7	127540376	127540377	rs13246286	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	7q32.1		rs13246286-?	NR	6E-8				NR [~ 8900000] (imputed)	N
1558	chr7	127546471	127546472	rs1468701	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	7q32.1	NR	rs1468701-G	0.2952	3E-14				NR [9056863] (imputed)	N
1558	chr7	127572976	127572977	rs77999825	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	7q32.1	Intergenic	rs77999825-A	0.0373	3E-18	(MTAG)	0.0381	[0.029-0.047] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1558	chr7	127572976	127572977	rs77999825	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	7q32.1		rs77999825-A	0.0343	5E-14		0.0294	[0.022-0.037] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1558	chr7	127572976	127572977	rs77999825	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	7q32.1	Intergenic	rs77999825-A	0.0343	6E-18	(MTAG)	0.0313	[0.024-0.038] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1558	chr7	127572976	127572977	rs77999825	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	7q32.1	Intergenic	rs77999825-A	0.0356	9E-14	(MTAG)	0.0461	[0.034-0.058] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1558	chr7	127574395	127574396	rs75278839	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	7q32.1		rs75278839-T	0.0343	1E-13	(conditional-joint)	0.0291	[0.021-0.037] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1558	chr7	127584721	127584722	rs12154492	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	7q32.1		rs12154492-T	0.28	7E-20		9.12	z score increase	Affymetrix [9061022] (imputed)	N
1558	chr7	127590913	127590914	rs741094	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical thickness (MOSTest)	26,502 European ancestry individuals	NA	7q32.1	RDH14, NT5C1B-RDH14, NT5C1B	rs741094-?		2E-10				NR [7428630] (imputed)	N
1558	chr7	127595076	127595077	rs12536253	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	7q32.1		rs12536253-C	NR	9E-14		0.016	[0.012-0.02] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
1558	chr7	127595076	127595077	rs12536253	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	7q32.1		rs12536253-C	NR	2E-12		0.0179	[0.013-0.023] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
1558	chr7	127595076	127595077	rs12536253	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	7q32.1		rs12536253-?	NR	4E-8				NR [9705931] (imputed)	N
1558	chr7	127595076	127595077	rs12536253	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fruit consumption	335,576 European ancestry individuals	NA	7q32.1	PAX4, SND1, LRRC4	rs12536253-?	NR	9E-10		0.0172397	[0.012-0.023] unit increase	Affymetrix [25921788] (imputed)	N
1558	chr7	127595076	127595077	rs12536253	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	7q32.1	NR	rs12536253-C	NR	3E-9		5.928	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1558	chr7	127595572	127595573	rs3808072	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	7q32.1	LRRC4	rs3808072-T	0.2623	2E-9		0.01315797	[0.0088-0.0175] unit decrease	Illumina [9339358] (imputed)	N
1558	chr7	127595572	127595573	rs3808072	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling worry	372,869 European ancestry individuals	NA	7q32.1	GRM8	rs3808072-T	0.270741	2E-10		6.332	unit increase	NR [10847151] (imputed)	N
1558	chr7	127601253	127601254	rs1362267	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	7q32.1	NR	rs1362267-?	NR	2E-7		0.009122	[0.0057-0.0126] unit increase	Affymetrix [805426] (imputed)	N
1558	chr7	127607473	127607474	rs720300	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	7q32.1	SND1	rs720300-A	0.877	2E-12		0.0126	[0.0091-0.0161] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
1558	chr7	127607473	127607474	rs720300	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	7q32.1	LRRC4	rs720300-A	0.8741	6E-11		0.019167446	[0.013-0.025] unit decrease	Illumina [9339358] (imputed)	N
1558	chr7	127660762	127660763	rs6467157	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	7q32.1	SND1	rs6467157-T	0.712608	1E-11		0.019506	[0.014-0.025] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1559	chr7	127671510	127671511	rs79520962	30279531	Baselmans BML	2018-10-02	Sci Rep	A genetic perspective on the relationship between eudaimonic -and hedonic well-being.	Eudaimonic well-being	108,154 British ancestry individuals	NA	7q32.1	NR	rs79520962-A	0.05	2E-9		6.015	[NR] z score decrease	Affymetrix [~ 8600000] (imputed)	N
1559	chr7	127672674	127672675	rs3735634	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	7q32.1	Intergenic	rs3735634-A	0.2651	1E-13	(MTAG)	0.0151	[0.011-0.019] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1559	chr7	127672674	127672675	rs3735634	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	7q32.1	Intergenic	rs3735634-G	0.7349	3E-13		0.0161	[0.012-0.02] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1559	chr7	127682118	127682119	rs117123883	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	7q32.1	Intergenic	rs117123883-A	0.9631	2E-8		0.0337	[0.022-0.045] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1559	chr7	127688149	127688150	rs4731392	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	7q32.1	NR	rs4731392-A	NR	3E-13		7.309	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1559	chr7	127690906	127690907	rs150626020	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	7q32.1		rs150626020-T	NR	8E-11		1.2053714	[1.13942107435275-1.27513890610741]	Illumina [8919992] (imputed)	N
1559	chr7	127690906	127690907	rs150626020	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	7q32.1	GCC1, PAX4	rs150626020-T	0.026	1E-8		1.19	1.12-1.26	Illumina [12557761] (imputed)	N
1559	chr7	127695856	127695857	rs3757757	34518958	Sanders AR	2021-09-13	Arch Sex Behav	Genome-Wide Linkage and Association Study of Childhood Gender Nonconformity in Males.	Childhood gender nonconformity	409 European ancestry concordant male sibling pairs	NA	7q32.1		rs3757757-G	0.873	3E-7		0.087	[0.054-0.12] unit decrease	Affymetrix [6030650] (imputed)	N
1559	chr7	127695856	127695857	rs3757757	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	7q32.1		rs3757757-G	0.885	7E-16		0.014	[0.01-0.018] unit decrease	NR [NR] (imputed)	N
1559	chr7	127716891	127716892	rs78066960	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	7q32.1	SND1	rs78066960-A	NR	7E-9		5.79	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1559	chr7	127733821	127733822	rs17151739	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	7q32.1	NR	rs17151739-C	0.293241	1E-12		0.049025573	[0.035-0.063] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1559	chr7	127733821	127733822	rs17151739	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	7q32.1	Intergenic	rs17151739-A	0.3047	8E-15	(MTAG)	0.0193	[0.014-0.024] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1559	chr7	127733821	127733822	rs17151739	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	7q32.1	Intergenic	rs17151739-A	0.3047	9E-13		0.0221	[0.016-0.028] unit increase	Affymetrix, Illumina [10100000] (imputed)	N
1559	chr7	127737044	127737045	rs322818	31786426	Farias Tempaku P	2019-08-14	Sleep Med	Genome-wide association study reveals two novel risk alleles for incident obstructive sleep apnea in the EPISONO cohort.	Obstructive sleep apnea trait (apnea hypopnea index, change over time)	404 European ancestry individuals, 97 Black individuals, 20 Asian ancestry individuals, 20 Indigenous individuals, 138 mixed race individuals, 27 individuals	NA	7q32.1	NR	rs322818-A	0.243	9E-6		0.2378	[0.13-0.34] unit increase	Illumina [up to 730525]	N
1559	chr7	127737228	127737229	rs12537331	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	7q32.1	Intergenic	rs12537331-T	0.2982	2E-11	(MTAG)	0.0096	[0.0069-0.0123] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1559	chr7	127743656	127743657	rs322816	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	7q32.1		rs322816-?	NR	2E-7				NR [~ 8900000] (imputed)	N
1559	chr7	127759840	127759841	rs322776	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	7q32.1	LRRC4	rs322776-T	0.4204	1E-9		0.015909763	[0.011-0.021] unit decrease	Affymetrix [~ 11515000] (imputed)	N
1559	chr7	127759840	127759841	rs322776	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Alcohol consumption (drinks per week)	414,343 European ancestry individuals	NA	7q32.1	LRRC4	rs322776-T	0.4205	2E-8		0.012627372	[0.0082-0.0171] unit decrease	Affymetrix [11514936] (imputed)	N
1559	chr7	127761916	127761917	rs61342118	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	7q32.1	PAX4, SND1, LEP	rs61342118-A	0.083	5E-105		1.34	[1.30-1.37]	Affymetrix, Illumina [11800000] (imputed)	N
1559	chr7	127778511	127778512	rs4731401	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	7q32.1	NR	rs4731401-?	NR	2E-6		0.0085134	[0.005-0.012] unit decrease	Affymetrix [805426] (imputed)	N
1559	chr7	127780400	127780401	rs322744	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	7q32.1		rs322744-T	0.2609	2E-8		0.009	[0.0059-0.0121] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1559	chr7	127792093	127792094	rs62484026	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	7q32.1	MIR129-1	rs62484026-A	NR	3E-8		5.54	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1559	chr7	127792201	127792202	rs111528598	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	7q32.1	NR	rs111528598-A	NR	2E-10		6.338	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1560	chr7	127826280	127826281	rs13232055	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	7q32.1	NR	rs13232055-?	NR	3E-7		5.137	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1560	chr7	127836131	127836132	rs4731413	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	7q32.1		rs4731413-A	0.2058	2E-10		0.0111	[0.0078-0.0144] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1560	chr7	127841625	127841626	rs4728092	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Hemoglobin A1c levels	42,790 Japanese ancestry individuals	NA	7q32.1	SND1, MIR129-1	rs4728092-?	NR	1E-9		0.07256	[0.049-0.096] unit increase novel	Illumina [6108953] (imputed)	N
1560	chr7	127844056	127844057	rs4731415	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	7q32.1	Intergenic	rs4731415-A	0.2775	1E-9	(MTAG)	0.0113	[0.0078-0.0148] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1560	chr7	127845935	127845936	rs4731418	34025683	Kanoni S	2021-05-07	Front Immunol	Nutrigenetic Interactions Might Modulate the Antioxidant and Anti-Inflammatory Status in Mastiha-Supplemented Patients With NAFLD.	Interleukin-6 levels in non-alcoholic fatty liver disease x mastiha supplementation interaction	35 European or unknown ancestry mastiha exposed individuals, 52 European or unknown ancestry unexposed individuals	NA	7q32.1	MIR129-1, LEP	rs4731418-G	0.73	4E-8		1.676	[1.08-2.27] unit decrease	Illumina [10307610] (imputed)	N
1560	chr7	127846469	127846470	rs35589574	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	7q32.1	Intergenic	rs35589574-T	0.2762	7E-9	(MTAG)	0.0085	[0.0056-0.0114] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1560	chr7	127851627	127851628	rs7778167	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	74,970 East Asian ancestry individuals	NA	7q32.1		rs7778167-A	0.110766	9E-13		0.0533474	[0.039-0.068] unit increase	Illumina [13465896] (imputed)	N
1560	chr7	127851627	127851628	rs7778167	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	High density lipoprotein cholesterol levels	70,657 Japanese ancestry individuals	NA	7q32.1	MIR129-1, LEP	rs7778167-?	NR	2E-11		0.05556	[0.039-0.072] unit increase novel	Illumina [6108953] (imputed)	N
1560	chr7	127856275	127856276	rs6979832	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	7q32.1	LEP	rs6979832-A	0.503006	2E-11		0.00941916	[0.0067-0.0122] unit decrease	Affymetrix [12370749]	N
1560	chr7	127860162	127860163	rs10487505	31575865	Helgeland O	2019-10-01	Nat Commun	Genome-wide association study reveals dynamic role of genetic variation in infant and early childhood growth.	BMI at 8 months old	7,197 Norwegian ancestry individuals	3,966 Norwegian ancestry individuals	7q32.1	LEP	rs10487505-C	0.493676	6E-6		0.061	[0.036-0.086] unit increase	Illumina [~ 8500000] (imputed)	N
1560	chr7	127860162	127860163	rs10487505	31575865	Helgeland O	2019-10-01	Nat Commun	Genome-wide association study reveals dynamic role of genetic variation in infant and early childhood growth.	BMI at 1.5 years old	6,800 Norwegian ancestry individuals	3,780 Norwegian ancestry individuals	7q32.1	LEP	rs10487505-C	0.493676	1E-8		0.079	[0.052-0.106] unit increase	Illumina [~ 8500000] (imputed)	N
1560	chr7	127860162	127860163	rs10487505	26833098	Kilpelainen TO	2016-02-01	Nat Commun	Genome-wide meta-analysis uncovers novel loci influencing circulating leptin levels.	circulating leptin levels adjusted for BMI	up to 14,094 European ancestry men, up to 19,893 European ancestry women	up to 9,076 European ancestry men, up to 9,150 European ancestry women	7q32.1	LEP	rs10487505-G	0.5	2E-12		0.029	[0.021-0.037] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1560	chr7	127860162	127860163	rs10487505	26833098	Kilpelainen TO	2016-02-01	Nat Commun	Genome-wide meta-analysis uncovers novel loci influencing circulating leptin levels.	circulating leptin levels adjusted for BMI	up to 14,094 European ancestry men, up to 19,893 European ancestry women	up to 9,076 European ancestry men, up to 9,150 European ancestry women	7q32.1	LEP	rs10487505-G	0.5	1E-9	(women)	0.033	[0.023-0.043] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1560	chr7	127860162	127860163	rs10487505	26833098	Kilpelainen TO	2016-02-01	Nat Commun	Genome-wide meta-analysis uncovers novel loci influencing circulating leptin levels.	circulating leptin levels	14,586 European ancestry men, 20,706 European ancestry women	8,554 European ancestry men, 8,337 European ancestry women	7q32.1	LEP	rs10487505-G	0.5	9E-6		0.023	[0.013-0.033] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1560	chr7	127860162	127860163	rs10487505	26833098	Kilpelainen TO	2016-02-01	Nat Commun	Genome-wide meta-analysis uncovers novel loci influencing circulating leptin levels.	circulating leptin levels	14,586 European ancestry men, 20,706 European ancestry women	8,554 European ancestry men, 8,337 European ancestry women	7q32.1	LEP	rs10487505-G	0.5	4E-6	(women)	0.033	[0.019-0.047] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1560	chr7	127862801	127862802	rs791595	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	7q32.1	MIR129-LEP	rs791595-A	0.07999999999999996	4E-14		1.1235955	[1.09-1.16]	Illumina [12557761] (imputed)	N
1560	chr7	127862801	127862802	rs791595	23945395	Hara K	2013-08-14	Hum Mol Genet	Genome-wide association study identifies three novel loci for type 2 diabetes.	Type 2 diabetes	5,976 Japanese ancestry cases, 20,829 Japanese ancestry controls	24,416 East Asian ancestry cases, 13,985 East Asian ancestry controls	7q32.1	MIR129, LEP	rs791595-A	0.08	3E-13		1.17	[1.12-1.22]	Illumina [6209637] (imputed)	N
1560	chr7	127863294	127863295	rs4731420	26818947	Imamura M	2016-01-28	Nat Commun	Genome-wide association studies in the Japanese population identify seven novel loci for type 2 diabetes.	Type 2 diabetes	15,463 Japanese ancestry cases, 26,183 Japanese ancestry controls	20,490 East Asian ancestry cases, 22,922 East Asian ancestry controls, 38,947 European ancestry cases, 121,903 European ancestry controls, 10,587 South Asian ancestry cases, 14,378 South Asian ancestry controls, 3,848 Mexican/Latino cases, 4,366 Mexican/Latino controls	7q32.1	MIR129, LEP	rs4731420-C	NR	8E-8	(Japanese)	1.1570164	[1.09703252701443-1.22028007868366]	Illumina [7521072] (imputed)	N
1560	chr7	127865815	127865816	rs791600	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels adjusted for BMI	56,708 European ancestry, African American or Afro-Caribbean, East Asian ancestry, Hispanic or Latin American individuals		7q32.1	LEP	rs791600-A	0.422	2E-16		0.099	[0.075-0.123] unit decrease	Illumina [92057]	N
1560	chr7	127865815	127865816	rs791600	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels adjusted for BMI	56,708 European ancestry, African American or Afro-Caribbean, East Asian ancestry, Hispanic or Latin American individuals		7q32.1	LEP	rs791600-A	0.422	1E-23		0.066	[0.052-0.08] unit decrease	Illumina [232237]	N
1560	chr7	127865815	127865816	rs791600	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels adjusted for BMI	49,830 European ancestry individuals		7q32.1	LEP	rs791600-A	0.411	5E-19		0.063	[0.049-0.077] unit decrease	Illumina [204609]	N
1560	chr7	127865815	127865816	rs791600	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels adjusted for BMI	49,830 European ancestry individuals		7q32.1	LEP	rs791600-A	0.411	3E-15		0.099	[0.074-0.124] unit decrease	Illumina [54056]	N
1560	chr7	127865815	127865816	rs791600	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels adjusted for BMI	32,886 European ancestry, African American or Afro-Caribbean, East Asian ancestry, Hispanic or Latin American women		7q32.1	LEP	rs791600-A	0.434	6E-13		0.112	[0.081-0.143] unit decrease	Illumina [86054]	N
1560	chr7	127865815	127865816	rs791600	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels adjusted for BMI	32,886 European ancestry, African American or Afro-Caribbean, East Asian ancestry, Hispanic or Latin American women		7q32.1	LEP	rs791600-A	0.434	4E-20		0.079	[0.061-0.097] unit decrease	Illumina [227473]	N
1560	chr7	127865815	127865816	rs791600	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels adjusted for BMI	27,947 European ancestry women		7q32.1	LEP	rs791600-A	0.413	3E-17		0.08	[0.062-0.098] unit decrease	Illumina [193169]	N
1560	chr7	127865815	127865816	rs791600	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels adjusted for BMI	27,947 European ancestry women		7q32.1	LEP	rs791600-A	0.413	1E-11		0.118	[0.085-0.151] unit decrease	Illumina [49530]	N
1560	chr7	127865815	127865816	rs791600	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels adjusted for BMI	23,822 European ancestry, African American or Afro-Caribbean, East Asian ancestry, Hispanic or Latin American men		7q32.1	LEP	rs791600-A	0.406	7E-8		0.054	[0.034-0.074] unit decrease	Illumina [220721]	N
1560	chr7	127865815	127865816	rs791600	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels adjusted for BMI	23,822 European ancestry, African American or Afro-Caribbean, East Asian ancestry, Hispanic or Latin American men		7q32.1	LEP	rs791600-A	0.406	4E-7		0.095	[0.058-0.132] unit decrease	Illumina [60745]	N
1560	chr7	127865815	127865816	rs791600	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels adjusted for BMI	21,883 European ancestry men		7q32.1	LEP	rs791600-A	0.41	3E-6		0.049	[0.029-0.069] unit decrease	Illumina [185190]	N
1560	chr7	127865815	127865816	rs791600	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels adjusted for BMI	21,883 European ancestry men		7q32.1	LEP	rs791600-A	0.41	2E-6		0.092	[0.055-0.129] unit decrease	Illumina [46877]	N
1560	chr7	127865815	127865816	rs791600	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels	56,802 European ancestry, African American or Afro-Caribbean, East Asian ancestry, Hispanic or Latin American individuals		7q32.1	LEP	rs791600-A	0.422	7E-10		0.074	[0.05-0.098] unit decrease	Illumina [92082]	N
1560	chr7	127865815	127865816	rs791600	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels	56,802 European ancestry, African American or Afro-Caribbean, East Asian ancestry, Hispanic or Latin American individuals		7q32.1	LEP	rs791600-A	0.422	3E-13		0.048	[0.034-0.062] unit decrease	Illumina [232255]	N
1560	chr7	127865815	127865816	rs791600	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels	49,909 European ancestry individuals		7q32.1	LEP	rs791600-A	0.411	6E-8		0.07	[0.045-0.095] unit decrease	Illumina [54083]	N
1560	chr7	127865815	127865816	rs791600	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels	49,909 European ancestry individuals		7q32.1	LEP	rs791600-A	0.411	1E-9		0.043	[0.029-0.057] unit decrease	Illumina [204641]	N
1560	chr7	127865815	127865816	rs791600	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels	32,940 European ancestry, African American or Afro-Caribbean, East Asian ancestry, Hispanic or Latin American women		7q32.1	LEP	rs791600-A	0.434	3E-12		0.06	[0.042-0.078] unit decrease	Illumina [227495]	N
1560	chr7	127865815	127865816	rs791600	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels	32,940 European ancestry, African American or Afro-Caribbean, East Asian ancestry, Hispanic or Latin American women		7q32.1	LEP	rs791600-A	0.434	2E-8		0.088	[0.057-0.119] unit decrease	Illumina [86076]	N
1560	chr7	127865815	127865816	rs791600	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels	27,987 European ancestry women		7q32.1	LEP	rs791600-A	0.413	8E-9		0.054	[0.036-0.072] unit decrease	Illumina [193201]	N
1560	chr7	127865815	127865816	rs791600	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels	27,987 European ancestry women		7q32.1	LEP	rs791600-A	0.413	2E-6		0.083	[0.05-0.116] unit decrease	Illumina [49551]	N
1560	chr7	127867454	127867455	rs79947808	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	7q32.1	NR	rs79947808-G	NR	8E-6		1.1363636	[NR]	Illumina [7158791] (imputed)	N
1560	chr7	127894591	127894592	rs17151919	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels adjusted for BMI	56,708 European ancestry, African American or Afro-Caribbean, East Asian ancestry, Hispanic or Latin American individuals		7q32.1	LEP	rs17151919-A	0.007	2E-16		0.333	[0.25-0.41] unit decrease	Illumina [232237]	N
1560	chr7	127894591	127894592	rs17151919	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels adjusted for BMI	32,886 European ancestry, African American or Afro-Caribbean, East Asian ancestry, Hispanic or Latin American women		7q32.1	LEP	rs17151919-A	0.007	6E-9		0.291	[0.19-0.39] unit decrease	Illumina [227473]	N
1560	chr7	127894591	127894592	rs17151919	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels adjusted for BMI	23,822 European ancestry, African American or Afro-Caribbean, East Asian ancestry, Hispanic or Latin American men		7q32.1	LEP	rs17151919-A	0.006	1E-9		0.399	[0.27-0.53] unit decrease	Illumina [220721]	N
1560	chr7	127894591	127894592	rs17151919	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels	56,802 European ancestry, African American or Afro-Caribbean, East Asian ancestry, Hispanic or Latin American individuals		7q32.1	LEP	rs17151919-A	0.007	1E-10		0.259	[0.18-0.34] unit decrease	Illumina [232255]	N
1560	chr7	127894591	127894592	rs17151919	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels	32,940 European ancestry, African American or Afro-Caribbean, East Asian ancestry, Hispanic or Latin American women		7q32.1	LEP	rs17151919-A	0.007	2E-6		0.233	[0.14-0.33] unit decrease	Illumina [227495]	N
1560	chr7	127894591	127894592	rs17151919	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels	23,861 European ancestry, African American or Afro-Caribbean, East Asian ancestry, Hispanic or Latin American men		7q32.1	LEP	rs17151919-A	0.006	3E-6		0.31	[0.18-0.44] unit decrease	Illumina [220735]	N
1560	chr7	127898799	127898800	rs12537573	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	circulating leptin levels	21,758 European ancestry individuals	9,173 individuals	7q32.1		rs12537573-A	0.61	2E-10		0.0607	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1561	chr7	127981204	127981205	rs73230660	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7q32.1	NR	rs73230660-T	0.01045	1E-9	(AMBP)	0.04479	NR unit increase	Illumina [1671387] (imputed)	N
1561	chr7	128023339	128023340	rs115597874	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7q32.1	NR	rs115597874-A	0.0122	3E-8	(CTSB)	0.5517	NR unit increase	Illumina [1671387] (imputed)	N
1561	chr7	128032832	128032833	rs72624976	32184442	Olafsdottir T	2020-03-17	Commun Biol	Genome-wide association identifies seven loci for pelvic organ prolapse in Iceland and the UK Biobank.	Pelvic organ prolapse	15,010 European ancestry cases, 340,734 European ancestry controls	NA	7q32.1	IMPDH1	rs72624976-C	0.9513	4E-12		1.25	[1.18-1.33]	Affymetrix, Illumina [37144863] (imputed)	N
1562	chr7	128138965	128138966	rs186367709	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Lean body mass	3,399 whole genome sequenced individuals, 11,801 European ancestry individuals	10,676 European ancestry individuals	7q32.1	METTL2B	rs186367709-A	0.0135	6E-6		0.245	[0.14-0.35] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1562	chr7	128139458	128139459	rs143319329	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-1-beta levels	3,309 Finnish ancestry individuals	NA	7q32.1	NR	rs143319329-C	NR	2E-6		0.2801	[0.14-0.42] SD units decrease	NR [10700000] (imputed)	N
1562	chr7	128141864	128141865	rs1053124	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q32.1	NR	rs1053124-C	0.783003	5E-10				Affymetrix, Illumina [23467995] (imputed)	N
1562	chr7	128144761	128144762	rs112426857	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Yeast infection	52,218 European ancestry cases, 10,235 European ancestry controls	NA	7q32.1	NR	rs112426857-?	NR	6E-6		0.0298	[0.017-0.043] unit increase	Illumina [at least 560000] (imputed)	N
1564	chr7	128376899	128376900	rs339057	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	7q32.1		rs339057-A	0.4185	1E-8		0.0081	[0.0054-0.0108] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1564	chr7	128380748	128380749	rs2060717	32562552	Chua KC	2020-06-20	Clin Pharmacol Ther	Genome-Wide Meta-Analysis Validates a Roless for S1PR1 in Microtubule Targeting Agent-Induced Sensory Peripheral Neuropathy.	Sensory peripheral neuropathy in microtubule targeting agent-treated breast cancer	1,324 European ancestry individuals	NA	7q32.1	CALU	rs2060717-?		3E-6		0.496	[NR] unit increase	Illumina [6030476] (imputed)	N
1564	chr7	128396344	128396345	rs339099	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	7q32.1		rs339099-T	0.5036	1E-19	(conditional-joint)	0.0127	[0.01-0.0154] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1564	chr7	128401809	128401810	rs4559164	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	7q32.1	Intergenic	rs4559164-G	0.5877	2E-11		0.0155	[0.011-0.02] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1564	chr7	128402781	128402782	rs113520408	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	7q32.1	Intergenic	rs113520408-A	0.2742	8E-23	(MTAG)	0.0197	[0.016-0.024] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1564	chr7	128402781	128402782	rs113520408	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	7q32.1	Intergenic	rs113520408-G	0.7258	9E-16		0.0176	[0.013-0.022] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1564	chr7	128402781	128402782	rs113520408	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	7q32.1	Intergenic	rs113520408-A	0.2746	4E-29	(MTAG)	0.0207	[0.017-0.024] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1564	chr7	128402781	128402782	rs113520408	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	7q32.1		rs113520408-A	0.2756	1E-22		0.0155	[0.012-0.019] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1564	chr7	128402781	128402782	rs113520408	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	7q32.1	Intergenic	rs113520408-A	0.2756	2E-28	(MTAG)	0.0163	[0.013-0.019] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1564	chr7	128402781	128402782	rs113520408	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	7q32.1	NR	rs113520408-A	0.2738	7E-9		0.014647213	NR unit increase	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
1564	chr7	128406046	128406047	rs339095	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	7q32.1	NR	rs339095-G	0.497	2E-8		0.00744603	[0.0049-0.01] unit decrease	NR [~ 9732723] (imputed)	N
1564	chr7	128410011	128410012	rs1043595	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	7q32.1	NR	rs1043595-G	0.277336	5E-11		0.04611602	[0.032-0.06] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1564	chr7	128410011	128410012	rs1043595	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	7q32.1	Intergenic	rs1043595-A	0.283	5E-23	(MTAG)	0.0252	[0.02-0.03] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1564	chr7	128410011	128410012	rs1043595	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	7q32.1	Intergenic	rs1043595-A	0.283	4E-11		0.021	[0.015-0.027] unit increase	Affymetrix, Illumina [10100000] (imputed)	N
1564	chr7	128410011	128410012	rs1043595	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	7q32.1	NR	rs1043595-A	NR	1E-9		6.071	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1564	chr7	128410011	128410012	rs1043595	29899525	Klimentidis YC	2018-06-13	Int J Obes (Lond)	Genome-wide association study of habitual physical activity in over 377,000 UK Biobank participants identifies multiple variants including CADM2 and APOE.	Moderate to vigorous physical activity levels	377,234 European ancestry individuals	NA	7q32.1	CALU	rs1043595-G	0.72	4E-9		0.014	unit increase	Affymetrix [11800000] (imputed)	N
1564	chr7	128410011	128410012	rs1043595	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	7q32.1	CALU	rs1043595-A	NR	3E-10		0.02060705	[0.014-0.027] unit increase	Affymetrix [NR]	N
1564	chr7	128413776	128413777	rs79158266	34216518	Osman Y	2021-07-03	Int J Lab Hematol	Functional multigenic variations associated with hodgkin lymphoma.	Hodgkin's lymphoma	56 Greater Middle Eastern ancestry cases,  5 unknown ancestry cases, 36 Greater Middle Eastern ancestry controls	NA	7q32.1	OPN1SW and CALU	rs79158266-A	0.241	2E-11		0.02873		Illumina [243345]	N
1564	chr7	128415194	128415195	rs1799922	23704328	Fatemifar G	2013-05-23	Hum Mol Genet	Genome-wide association study of primary tooth eruption identifies pleiotropic loci associated with height and craniofacial distances.	Primary tooth development (time to first tooth eruption)	11,118 European ancestry individuals		7q32.1	CALU, OPN1SW	rs1799922-T	NR	9E-7		0.14	[0.083-0.197] unit decrease	Illumina [2446724] (imputed)	N
1564	chr7	128415194	128415195	rs1799922	23704328	Fatemifar G	2013-05-23	Hum Mol Genet	Genome-wide association study of primary tooth eruption identifies pleiotropic loci associated with height and craniofacial distances.	Primary tooth development (number of teeth)	11,513 European ancestry individuals		7q32.1	CALU, OPN1SW	rs1799922-T	NR	4E-9		0.144	[0.097-0.191] unit increase	Illumina [2446724] (imputed)	N
1564	chr7	128417043	128417044	rs55985730	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	7q32.1	OPN1SW, CALU	rs55985730-G	0.06	5E-9		1.09	[1.06-1.12]	Illumina [34740186] (imputed)	N
1564	chr7	128417043	128417044	rs55985730	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	7q32.1	OPN1SW	rs55985730-G	0.06	2E-8		1.1	[1.06-1.14]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1564	chr7	128423691	128423692	rs117462426	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7q32.1	NR	rs117462426-T	0.0122	1E-8	(AKR1B10)	2.043	NR unit increase	Illumina [1671387] (imputed)	N
1564	chr7	128430436	128430437	rs60871386	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Hypertrophic cardiomyopathy (MTAG)	1,733 European ancestry cases, 6,628 European ancestry controls	NA	7q32.1	CCDC136	rs60871386-T	0.0985	2E-9		1.4321833	1.25-1.64	Illumina [6530233] (imputed)	N
1564	chr7	128430436	128430437	rs60871386	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Hypertrophic cardiomyopathy	1,733 European ancestry cases, 6,628 European ancestry controls	2,694 European ancestry cases, 47,486 European ancestry controls	7q32.1	CCDC136	rs60871386-T	0.0985	9E-10		1.291619	1.19-1.40	Illumina [6530233] (imputed)	N
1565	chr7	128453850	128453851	rs56216811	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q32.1	CCDC136	rs56216811-T	0.829196	4E-8	(-28 ms)	0.0414595	[0.026-0.056] unit increase	Affymetrix [10000000] (imputed)	N
1565	chr7	128453850	128453851	rs56216811	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q32.1	CCDC136	rs56216811-T	0.829196	2E-9	(-26 ms)	0.0459975	[0.031-0.061] unit increase	Affymetrix [10000000] (imputed)	N
1565	chr7	128453850	128453851	rs56216811	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q32.1	CCDC136	rs56216811-T	0.829196	2E-11	(-24 ms)	0.0519035	[0.037-0.067] unit increase	Affymetrix [10000000] (imputed)	N
1565	chr7	128453850	128453851	rs56216811	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q32.1	CCDC136	rs56216811-T	0.829196	1E-12	(-22 ms)	0.0552269	[0.04-0.07] unit increase	Affymetrix [10000000] (imputed)	N
1565	chr7	128453850	128453851	rs56216811	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q32.1	CCDC136	rs56216811-T	0.829196	1E-12	(-20 ms)	0.0548398	[0.04-0.07] unit increase	Affymetrix [10000000] (imputed)	N
1565	chr7	128460755	128460756	rs59197085	25065397	Gialluisi A	2014-07-28	Genes Brain Behav	Genome-wide screening for DNA variants associated with reading and language traits.	Reading disability or specific language impairment adjusted for intelligence quotient (pleiotropy)	1,826 children	NA	7q32.1	OPN1SW, FLNC, CCDC136, CALU, ATP6V1F	rs59197085-A	0.07971	3E-7		5.123	z score decrease	Illumina [at least 6190549] (imputed)	N
1565	chr7	128460755	128460756	rs59197085	25065397	Gialluisi A	2014-07-28	Genes Brain Behav	Genome-wide screening for DNA variants associated with reading and language traits.	Reading disability or specific language impairment (pleiotropy)	548 children from 288 families, 749 children from 343 unrelated twinships/sibliships, 959 children	NA	7q32.1	FLNC, CCDC136, OPN1SW, CALU, ATP6V1F	rs59197085-A	0.07971	4E-7		5.076	z score decrease	Illumina [at least 6190549] (imputed)	N
1565	chr7	128488733	128488734	rs2291569	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Dilated cardiomyopathy (MTAG)	5,521 cases, 397,323 controls	NA	7q32.1	FLNC	rs2291569-G	0.9163	9E-12		1.1621951	1.11-1.21	Affymetrix, Illumina [up to 7736182] (imputed)	N
1565	chr7	128488733	128488734	rs2291569	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Dilated cardiomyopathy	5,521 cases, 397,323 controls	NA	7q32.1	FLNC	rs2291569-G	0.9163	7E-10			[NR]	Affymetrix, Illumina [up to 7736182] (imputed)	N
1565	chr7	128503542	128503543	rs1472147	25886283	Chang X	2015-04-17	PLoS One	Genome-wide association study of serum minerals levels in children of different ethnic background.	Calcium levels	5,261 European ancestry children, 3,817 African American ancestry children		7q32.1	NR	rs1472147-A	NR	7E-6	(AA)	0.0488	[0.028-0.070] mg/dl increase	Illumina [up to 507950]	N
1565	chr7	128549877	128549878	rs76600480	33495597	Harper AR	2021-01-25	Nat Genet	Common genetic variants and modifiable risk factors underpin hypertrophic cardiomyopathy susceptibility and expressivity.	Hypertrophic cardiomyopathy (sarcomere positive)	54 African ancestry cases, 28 Hispanic/Latino cases, 18 East Asian ancestry cases, 728 European ancestry cases, 43 South Asian ancestry cases, 593 African ancestry controls, 92 Hispanic/Latino controls, 121 East Asian ancestry controls, 18,791 European ancestry controls, 595 South Asian ancestry controls	NA	7q32.1	FLNC	rs76600480-C	0.97417	6E-7		0.6898	[0.42-0.96] unit decrease	Affymetrix [8590397] (imputed)	N
1565	chr7	128562445	128562446	rs73238193	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	7q32.1	NR	rs73238193-G	NR	3E-15		0.02	[0.015-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
1565	chr7	128562577	128562578	rs4731530	32771030	Tangtanatakul P	2020-08-08	Arthritis Res Ther	Meta-analysis of genome-wide association study identifies FBN2 as a novel locus associated with systemic lupus erythematosus in Thai population.	Systemic lupus erythematosus	487 Thai cases, 1,606 Thai controls	405 Thai cases, 1,590 Thai controls	7q32.1	RP11-309L24.6, IRF5	rs4731530-G	0.48	2E-6		1.3014	[NR]	Illumina [421909] (imputed)	N
1565	chr7	128568959	128568960	rs729302	23273568	Yang W	2012-12-27	Am J Hum Genet	Meta-analysis followed by replication identifies loci in or near CDKN1B, TET3, CD80, DRAM1, and ARID5B as associated with systemic lupus erythematosus in Asians.	Systemic lupus erythematosus	1,656 Han Chinese ancestry cases, 3,394 Han Chinese ancestry controls	3,256 Han Chinese ancestry cases, 5,667 Han Chinese ancestry controls, 453 Thai ancestry cases, 963 Thai ancestry controls	7q32.1	IRF5	rs729302-A	0.66	1E-9		1.4706		Illumina [2100739] (imputed)	N
1565	chr7	128568959	128568960	rs729302	23053960	Lee YH	2012-10-07	Mol Biol Rep	Genome-wide pathway analysis of genome-wide association studies on systemic lupus erythematosus and rheumatoid arthritis.	Systemic lupus erythematosus	1,527 European ancestry cases, 3,421 European ancestry controls,	NA	7q32.1	IRF5	rs729302-A	NR	4E-8		1.29	[1.41-1.18]	Illumina [737984]	N
1565	chr7	128572765	128572766	rs4731532	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Sjogren's syndrome	1,296 European ancestry cases, 482,717 European ancestry controls, 303 East Asian ancestry cases, 175,599 East Asian ancestry controls	NA	7q32.1		rs4731532-A	NR	1E-9		0.2272	[0.15-0.3] unit increase	Affymetrix, Illumina [25844664] (imputed)	N
1565	chr7	128572765	128572766	rs4731532	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	7q32.1		rs4731532-A	NR	2E-8		0.0114	[0.0075-0.0153] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
1565	chr7	128572765	128572766	rs4731532	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Systemic sclerosis	3,477 European ancestry cases, 22,308 European ancestry controls	NA	7q32.1	IRF5	rs4731532-A	0.506	2E-12		1.2317858		Illumina [252970]	N
1565	chr7	128572765	128572766	rs4731532	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Rheumatoid arthritis	15,523 European ancestry cases, 22,308 European ancestry controls	NA	7q32.1	IRF5	rs4731532-A	0.507	1E-7		1.0885718		Illumina [252970]	N
1565	chr7	128572765	128572766	rs4731532	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Autoimmune traits (pleiotropy)	11,489 European ancestry cases with celiac disease, 15,523 European ancestry cases with rheumatoid arthritis, 3,477 European ancestry cases with systemic sclerosis, 6,670 European ancestry cases with type 1 diabetes, 22,308 European ancestry controls	NA	7q32.1	IRF5	rs4731532-A	NA	1E-10				Illumina [252970]	N
1565	chr7	128573966	128573967	rs4728142	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Rheumatoid arthritis	5,348 East Asian ancestry cases, 173,268 East Asian ancestry controls	NA	7q32.1		rs4728142-A	0.103736386	7E-10		0.20477366	[0.14-0.27] unit increase	Illumina [13429970] (imputed)	N
1565	chr7	128573966	128573967	rs4728142	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	7q32.1	IRF5	rs4728142-G	0.551843	7E-14		0.00171276	[0.0013-0.0022] unit decrease	Affymetrix [13995440] (imputed)	N
1565	chr7	128573966	128573967	rs4728142	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	7q32.1	KCP	rs4728142-A	NR	3E-9		1.058313	NR	Affymetrix, Illumina [8278136] (imputed)	N
1565	chr7	128573966	128573967	rs4728142	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Ulcerative colitis	12,366 European and unknown ancestry cases, 33,609 European and unknown ancestry controls	NA	7q32.1	IRF5	rs4728142-?		3E-10				Illumina [9578670] (imputed)	N
1565	chr7	128573966	128573967	rs4728142	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Systolic blood pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	7q32.1	Intergenic	rs4728142-A	0.4341	3E-8		0.242	mmHg decrease	Illumina [242296]	N
1565	chr7	128573966	128573967	rs4728142	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Hypertension	up to 83,330 European ancestry cases, up to 73,760 European ancestry controls, up to 9,322 South Asian ancestry cases, up to 16,861 South Asian ancestry controls	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	7q32.1	intergenic	rs4728142-A	0.4267	3E-7		5.155	z score decrease	Illumina [242296]	N
1565	chr7	128573966	128573967	rs4728142	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Diastolic blood pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	7q32.1	Intergenic	rs4728142-A	0.4296	9E-7		0.1307	[0.079-0.183] mmHg decrease	Illumina [242296]	N
1565	chr7	128573966	128573967	rs4728142	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	7q32.1	IRF5	rs4728142-?	NR	2E-11	(subset analysis)			Illumina [130052]	N
1565	chr7	128573966	128573967	rs4728142	26606652	Alarcon-Riquelme ME	2015-11-25	Arthritis Rheumatol	Genome-Wide Association Study in an Amerindian Ancestry Population Reveals Novel Systemic Lupus Erythematosus Risk Loci and the Role of European Admixture.	Systemic lupus erythematosus	862 Native American ancestry-enriched North American cases, 531 Native American ancestry-enriched South American cases, 1,973 Native American ancestry-enriched North American controls, 344 Native American ancestry-enriched South American controls	NA	7q32.1	IRF5	rs4728142-A	0.387	1E-23		1.76	[1.59-1.95]	Illumina [580483] (imputed)	N
1565	chr7	128573966	128573967	rs4728142	26398853	Ye BD	2016-01-01	Inflamm Bowel Dis	Identification of Ten Additional Susceptibility Loci for Ulcerative Colitis Through Immunochip Analysis in Koreans.	Ulcerative colitis	705 Korean ancestry cases, 1,178 Korean ancestry controls	980 Korean ancestry cases, 2,694 Korean ancestry controls	7q32.1	IRF5	rs4728142-A	0.11	3E-8		1.4		Illumina [536821] (imputed)	N
1565	chr7	128573966	128573967	rs4728142	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	7q32.1	NR	rs4728142-A	0.439	2E-14	(EA)	1.1018242	[1.08-1.13]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1565	chr7	128573966	128573967	rs4728142	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	7q32.1	NR	rs4728142-A	0.439	6E-7	(EA)	1.0520436	[1.03-1.07]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1565	chr7	128573966	128573967	rs4728142	24871463	Armstrong DL	2014-05-29	Genes Immun	GWAS identifies novel SLE susceptibility genes and explains the association of the HLA region.	Systemic lupus erythematosus	725 European ancestry cases, 2,438 European ancestry controls	NA	7q32.1	IRF5	rs4728142-A	0.46	7E-10		1.454	[1.368-1.55]	Illumina [NR]	N
1565	chr7	128573966	128573967	rs4728142	24532676	Kim K	2014-02-14	Ann Rheum Dis	High-density genotyping of immune loci in Koreans and Europeans identifies eight new rheumatoid arthritis risk loci.	Rheumatoid arthritis (ACPA-positive)	2,234 Korean ancestry cases, 7,065 Korean ancestry controls, 10,288 European ancestry cases, 35,502 European ancestry controls	NA	7q32.1	IRF5	rs4728142-A	0.45	5E-12		1.13	[1.09-1.17]	Illumina [133816] (imputed)	N
1565	chr7	128573966	128573967	rs4728142	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Ulcerative colitis	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls	7q32.1	TSPAN33, TNPO3, IRF5	rs4728142-A	0.444	4E-14		1.104	[1.066-1.143]	Affymetrix, Illumina [1230000] (imputed)	N
1565	chr7	128573966	128573967	rs4728142	21297633	Anderson CA	2011-02-06	Nat Genet	Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47.	Ulcerative colitis	6,687 European ancestry cases, 19,718 European ancestry controls	9,628 European ancestry cases, 12,917 European ancestry controls	7q32.1	TNPO3, IRF5	rs4728142-A	0.44	2E-8		1.07	[1.03-1.11]	Affymetrix, Illumina [~ 1100000] (imputed)	N
1565	chr7	128573966	128573967	rs4728142	19838193	Han JW	2009-10-18	Nat Genet	Genome-wide association study in a Chinese Han population identifies nine new susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	1,047 Han Chinese ancestry cases, 1,205 Han Chinese ancestry controls	3,152 Han Chinese ancestry cases, 7,050 Han Chinese ancestry controls	7q32.1	IRF5	rs4728142-A	0.13	8E-19		1.43	[1.32-1.54]	Illumina [493955]	N
1565	chr7	128575797	128575811	rs113478424	26663301	Lessard CJ	2016-05-01	Arthritis Rheumatol	Identification of a Systemic Lupus Erythematosus Risk Locus Spanning ATG16L2, FCHSD2, and P2RY2 in Koreans.	Systemic lupus erythematosus	1,174 Korean ancestry cases, 4,246 Korean ancestry controls	739 Korean ancestry cases,  677 Chinese ancestry cases,  436 Korean ancestry controls, 709 Chinese ancestry controls	7q32.1	LOC392787, IRF5	rs113478424-?	NR	4E-12		1.59	[1.39-1.81]	Illumina [NR]	N
1565	chr7	128575798	128575812	rs11269962	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Rheumatoid arthritis	8,255 European ancestry cases, 409,001 European ancestry controls, 5,348 East Asian ancestry cases, 173,268 East Asian ancestry controls	NA	7q32.1		rs11269962-T	NR	1E-13		0.1087	[0.08-0.138] unit increase	Affymetrix, Illumina [25835038] (imputed)	N
1565	chr7	128576085	128576086	rs3757387	33310728	Ha E	2020-12-11	Ann Rheum Dis	Large-scale meta-analysis across East Asian and European populations updated genetic architecture and variant-driven biology of rheumatoid arthritis, identifying 11 novel susceptibility loci.	Rheumatoid arthritis	14,361 European ancestry cases, 43,923 European ancestry controls, 8,267 East Asian ancestry cases, 244,741 East Asian ancestry controls	NA	7q32.1		rs3757387-T	NR	2E-19		0.88	[0.86-0.91]	NR [13810676] (imputed)	N
1565	chr7	128576085	128576086	rs3757387	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	7q32.1	IRF5	rs3757387-T	0.863	9E-79		0.693	[0.65-0.73]	Illumina [11270530] (imputed)	N
1565	chr7	128576085	128576086	rs3757387	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Rheumatoid arthritis	4,199 Japanese ancestry cases, 208,254 Japanese ancestry controls	NA	7q32.1		rs3757387-C	0.106400984	5E-9		1.2365348	[1.151675525-1.327646875]	Illumina [8919992] (imputed)	N
1565	chr7	128576085	128576086	rs3757387	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	7q32.1	IRF5	rs3757387-T	0.5895	4E-21		0.003	[0.0024-0.0036] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
1565	chr7	128576085	128576086	rs3757387	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	7q32.1	IRF5	rs3757387-T	0.5549	7E-18		0.0029	[0.0021-0.0037] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
1565	chr7	128576085	128576086	rs3757387	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	7q32.1		rs3757387-C	0.44404	3E-26		1.0459942	[1.04-1.05]	Affymetrix, Illumina [9851866] (imputed)	N
1565	chr7	128576085	128576086	rs3757387	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	7q32.1		rs3757387-?	NR	3E-13				NR [~ 8900000] (imputed)	N
1565	chr7	128576085	128576086	rs3757387	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	7q32.1	IRF5, TNPO3	rs3757387-?	NR	8E-33	(Hispanic)	1.71	[1.56-1.87]	Illumina [at least 5000000] (imputed)	N
1565	chr7	128576085	128576086	rs3757387	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	7q32.1	IRF5, TNPO3	rs3757387-?	NR	1E-17	(AA)	1.44	[1.33-1.57]	Illumina [at least 5000000] (imputed)	N
1565	chr7	128576085	128576086	rs3757387	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	NA	7q32.1	IRF5	rs3757387-C		1E-48	(conditional)	1.45	[NR]	Illumina [> 644674] (imputed)	N
1565	chr7	128576085	128576086	rs3757387	24097067	Lessard CJ	2013-11-01	Nat Genet	Variants at multiple loci implicated in both innate and adaptive immune responses are associated with Sjogren's syndrome.	Sjogren's syndrome	395 European ancestry cases, 1,975 European ancestry controls	1,243 European ancestry cases, 4,779 European ancestry controls	7q32.1	IRF5, TNPO3	rs3757387-C	0.45	3E-19		1.44	[1.29-1.62]	Illumina [648937]	N
1565	chr7	128577303	128577304	rs3757385	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q32.1	NR	rs3757385-G	0.578047	1E-15				Affymetrix, Illumina [24588908] (imputed)	N
1565	chr7	128577303	128577304	rs3757385	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	7q32.1	NR	rs3757385-G	0.629391	1E-14		0.014812	[0.011-0.019] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1565	chr7	128577914	128577914	rs142738614	33608531	Wu Y	2021-02-19	Nat Commun	GWAS of peptic ulcer disease implicates Helicobacter pylori infection, other gastrointestinal disorders and depression.	Inflammatory bowel disease	7,045 European ancestry cases, 449,282 European ancestry controls	NA	7q32.1	NR	rs142738614-C	0.55	3E-8		0.91	[NR]	NR [8546065] (imputed)	N
1565	chr7	128577916	128577916	rs1022745994	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	7q32.1	IRF5	rs1022745994-CGCGGG	0.452048	2E-10		0.014151586	[0.0098-0.0185] unit decrease	Affymetrix [93095623] (imputed)	N
1565	chr7	128578300	128578301	rs2004640	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q32.1	NR	rs2004640-T	0.482692	2E-10				Affymetrix, Illumina [23472807] (imputed)	N
1565	chr7	128578300	128578301	rs2004640	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7q32.1		rs2004640-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1565	chr7	128578306	128578307	rs41298401	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	7q32.1	NR	rs41298401-C	0.785	5E-45		1.294	[1.26-1.33]	Illumina [11270530] (imputed)	N
1565	chr7	128579201	128579202	rs3807307	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	7q32.1	IRF5	rs3807307-C	0.46368	5E-12		0.015319632	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1565	chr7	128579201	128579202	rs3807307	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	7q32.1		rs3807307-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1565	chr7	128579201	128579202	rs3807307	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Autoimmune traits	approximately 459,000 European ancestry individuals	NA	7q32.1		rs3807307-?	NR	7E-17				NR [~ 8900000] (imputed)	N
1565	chr7	128579201	128579202	rs3807307	22961000	Liu JZ	2012-10-01	Nat Genet	Dense fine-mapping study identifies new susceptibility loci for primary biliary cirrhosis.	Primary biliary cirrhosis	2,861 British and Irish ancestry cases, 8,514 British and Irish ancestry controls	NA	7q32.1	TNPO3, IRF5	rs3807307-G	0.47	4E-9	(conditioned on rs35188261)	1.22	[1.14-1.30]	Illumina [237619] (imputed)	N
1565	chr7	128579665	128579666	rs3823536	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	7q32.1		rs3823536-A	NR	2E-11		0.0112	[0.0079-0.0145] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
1565	chr7	128579665	128579666	rs3823536	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q32.1	NR	rs3823536-A	0.427608	5E-21				Affymetrix, Illumina [19872809] (imputed)	N
1565	chr7	128579665	128579666	rs3823536	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	7q32.1	NR	rs3823536-A	0.467209	3E-19		0.017818	[0.014-0.022] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
1565	chr7	128579665	128579666	rs3823536	28076899	Taylor KE	2017-01-11	Arthritis Rheumatol	Genome-Wide Association Analysis Reveals Genetic Heterogeneity of Sjogren's Syndrome According to Ancestry.	Sjogren's syndrome	585 European ancestry cases, up to 51 African ancestry cases, up to 164 Hispanic/Native american cases, up to 570 Asian ancestry cases, up to 59 cases, 1,546 European ancestry controls, 495 African ancestry controls, 237 Hispanic/Native American controls, 306 Asian ancestry controls, 148 controls.	NA	7q32.1	TNP03, IRF5	rs3823536-?		3E-14		1.49	[1.34-1.65]	Illumina [1444884]	N
1565	chr7	128579665	128579666	rs3823536	28076899	Taylor KE	2017-01-11	Arthritis Rheumatol	Genome-Wide Association Analysis Reveals Genetic Heterogeneity of Sjogren's Syndrome According to Ancestry.	Sjogren's syndrome	585 European ancestry cases, 1,546 European ancestry controls	NA	7q32.1	IRF5/TNP03	rs3823536-?		7E-11		1.54	[1.36-1.76]	Illumina [1444884]	N
1565	chr7	128580041	128580042	rs3778753	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	7q32.1	IRF5	rs3778753-A	NR	3E-14		0.108556	[0.081-0.136] unit decrease	Illumina [8380626] (imputed)	N
1565	chr7	128580041	128580042	rs3778753	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	7q32.1	IRF5	rs3778753-A	0.54	4E-12	(EA)	0.11128	[0.08-0.143] unit decrease	Illumina [8380626] (imputed)	N
1565	chr7	128580679	128580680	rs3807306	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis (ACPA-positive)	up to 9,585 European ancestry cases, up to 33,742 European ancestry controls	NA	7q32.1	IRF5	rs3807306-?	0.51	5E-10		1.1176931	(Immunochip only)	Illumina [129464] (imputed)	N
1565	chr7	128580679	128580680	rs3807306	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis	up to 13,838 European ancestry cases, up to 33,742 European ancestry controls	NA	7q32.1	IRF5	rs3807306-?	0.51	7E-10		1.0997471	(Immunochip only)	Illumina [129464] (imputed)	N
1565	chr7	128580679	128580680	rs3807306	21156761	Padyukov L	2010-12-14	Ann Rheum Dis	A genome-wide association study suggests contrasting associations in ACPA-positive versus ACPA-negative rheumatoid arthritis.	Rheumatoid arthritis	1,147 European ancestry ACPA positive RA cases, 774 European ancestry ACPA negative RA cases, 1,079 European ancestry controls	887 European ancestry ACPA positive RA cases, 1,218 European ancestry controls	7q32.1	IRF5	rs3807306-?	NR	3E-7	(ACPA-negative RA vs controls)	1.44	[1.25-1.66]	Illumina [1723056] (imputed)	N
1566	chr7	128585615	128585616	rs35000415	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	7q32.1	IRF5, TNPO3	rs35000415-?	NR	1E-99		1.82	[1.69-1.96]	Illumina [at least 5000000] (imputed)	N
1566	chr7	128585615	128585616	rs35000415	27399966	Morris DL	2016-07-11	Nat Genet	Genome-wide association meta-analysis in Chinese and European individuals identifies ten new loci associated with systemic lupus erythematosus.	Systemic lupus erythematosus	1,659 Chinese ancestry cases, 3,398 Chinese ancestry controls, 4,036 European ancestry cases, 6,959 European ancestry controls	3,043 Chinese ancestry cases, 5,074 Chinese ancestry controls, 2,643 European ancestry cases, 9,032 European ancestry controls	7q32.1	IRF5	rs35000415-?	0.108	2E-45	(EA)	1.8	[NR]	NR [6344733] (imputed)	N
1566	chr7	128585615	128585616	rs35000415	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	NA	7q32.1	IRF5	rs35000415-T		1E-60		1.83	[NR]	Illumina [> 644674] (imputed)	N
1566	chr7	128587034	128587035	rs192829776	33393726	Ortiz Fernandez L	2021-01-04	Arthritis Rheumatol	Genetic association of a gain of function interferon gamma receptor 1 (IFNGR1) polymorphism and the intergenic region LNCAROD/DKK1 with Behcet's disease.	Behcet's disease	2,344 Turkish ancestry cases, 1,920 Turkish ancestry controls, 437 European ancestry cases, 3,325 European ancestry controls, 312 East Asian ancestry cases, 398 East Asian ancestry controls, 104 Tunisian ancestry cases, 142 Tunisian ancestry controls	NA	7q32.1	IRF5	rs192829776-T	NR	6E-6		3.0191	NR	Illumina [up to 1244428] (imputed)	N
1566	chr7	128588999	128589000	rs2070197	19838195	Gateva V	2009-11-01	Nat Genet	A large-scale replication study identifies TNIP1, PRDM1, JAZF1, UHRF1BP1 and IL10 as risk loci for systemic lupus erythematosus.	Systemic lupus erythematosus	1,310 European ancestry cases, 7,859 European ancestry controls	1,963 European ancestry cases, 4,329 European ancestry controls	7q32.1	IRF5	rs2070197-C	0.11	6E-24		1.88	[1.78-1.95]	Illumina [~ 2100000] (imputed)	N
1566	chr7	128589426	128589427	rs10954213	24097067	Lessard CJ	2013-11-01	Nat Genet	Variants at multiple loci implicated in both innate and adaptive immune responses are associated with Sjogren's syndrome.	Sjogren's syndrome	395 European ancestry cases, 1,975 European ancestry controls	1,243 European ancestry cases, 4,779 European ancestry controls	7q32.1	IRF5, TNPO3	rs10954213-A	0.62	3E-6		1.2195122	[1.09-1.37]	Illumina [648937]	N
1566	chr7	128589632	128589633	rs10954214	30573655	Acosta-Herrera M	2018-12-20	Ann Rheum Dis	Genome-wide meta-analysis reveals shared new loci in systemic seropositive rheumatic diseases.	Systemic seropositive rheumatic diseases (Systemic sclerosis or systemic lupus erythematosus or rheumatoid arthritis or idiopathic inflammatory myopathies)	up to 4,595 European ancestry rheumatoid arthritis cases, up to 3,154 European ancestry systemic lupus erythematosus cases, up to 2,281 European ancestry systemic sclerosis cases, up to 1,674 European ancestry idiopathic inflammatory myopathy cases, 19,704 European ancestry controls	NA	7q32.1	IRF5	rs10954214-T	NR	7E-17		1.18	[1.13-1.23]	Illumina [6450125] (imputed)	N
1566	chr7	128594182	128594183	rs10488631	30247649	Gonzalez-Serna D	2018-09-21	Rheumatology (Oxford)	Analysis of the genetic component of systemic sclerosis in Iranian and Turkish populations through a genome-wide association study.	Systemic sclerosis	764 Middle Eastern ancestry cases, 1,343 Middle Eastern ancestry controls	NA	7q32.1	IRF5, TNPO4	rs10488631-C	NR	6E-7		1.63	[1.34-1.97]	Illumina [5698748] (imputed)	N
1566	chr7	128594182	128594183	rs10488631	29293537	Gorlova OY	2018-01-02	PLoS One	Gene-level association analysis of systemic sclerosis: A comparison of African-Americans and White populations.	Systemic sclerosis (anti-topoisomerase-positive)	347 European ancestry cases, 3,466 European ancestry controls, 69 African American cases, 260 African American controls	NA	7q32.1	TNPO3	rs10488631-?		4E-7	(EA)			Illumina [~ 2500000] (imputed)	N
1566	chr7	128594182	128594183	rs10488631	29293537	Gorlova OY	2018-01-02	PLoS One	Gene-level association analysis of systemic sclerosis: A comparison of African-Americans and White populations.	Systemic sclerosis (anti-centromere-positive)	671 European ancestry cases, 3,466 European ancestry controls, 21 African American cases, 260 African American controls	NA	7q32.1	IRF5, TNPO3	rs10488631-?		9E-7	(EA)			Illumina [~ 2500000] (imputed)	N
1566	chr7	128594182	128594183	rs10488631	29293537	Gorlova OY	2018-01-02	PLoS One	Gene-level association analysis of systemic sclerosis: A comparison of African-Americans and White populations.	Limited cutaneous systemic scleroderma	1,087 European ancestry cases, 3,466 European ancestry controls, 82 African American cases, 260 African American controls	NA	7q32.1	TNPO3, IRF5	rs10488631-?	NR	3E-10	(EA)			Illumina [~ 2500000] (imputed)	N
1566	chr7	128594182	128594183	rs10488631	29293537	Gorlova OY	2018-01-02	PLoS One	Gene-level association analysis of systemic sclerosis: A comparison of African-Americans and White populations.	Limited cutaneous systemic scleroderma	1,087 European ancestry cases, 3,466 European ancestry controls, 82 African American cases, 260 African American controls	NA	7q32.1	IRF5	rs10488631-?	NR	9E-7				Illumina [126270]	N
1566	chr7	128594182	128594183	rs10488631	29293537	Gorlova OY	2018-01-02	PLoS One	Gene-level association analysis of systemic sclerosis: A comparison of African-Americans and White populations.	Diffuse cutaneous systemic sclerosis	574 European ancestry cases, 3,466 European ancestry controls, 201 African American cases, 260 African American controls	NA	7q32.1	TNPO3	rs10488631-?		1E-9	(EA)			Illumina [~ 2500000] (imputed)	N
1566	chr7	128594182	128594183	rs10488631	29293537	Gorlova OY	2018-01-02	PLoS One	Gene-level association analysis of systemic sclerosis: A comparison of African-Americans and White populations.	Diffuse cutaneous systemic sclerosis	574 European ancestry cases, 3,466 European ancestry controls, 201 African American cases, 260 African American controls	NA	7q32.1	IRF5	rs10488631-?		1E-9	(EA)			Illumina [~ 2500000] (imputed)	N
1566	chr7	128594182	128594183	rs10488631	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	2,018 European ancestry cases, 6,925 European ancestry controls	7q32.1	IRF5, TNPO3	rs10488631-C		9E-110		1.92	[1.81-2.03]	Illumina [644674]	N
1566	chr7	128594182	128594183	rs10488631	26394269	Cordell HJ	2015-09-22	Nat Commun	International genome-wide meta-analysis identifies new primary biliary cirrhosis risk loci and targetable pathogenic pathways.	Primary biliary cholangitis	2,764 European ancestry cases, 10,475 European ancestry controls	3,716 European ancestry cases,  4,261 European ancestry controls	7q32.1	IRF5, TNP03	rs10488631-C	0.08999999999999997	5E-23		1.5873016	NR	Illumina [1143634] (imputed)	N
1566	chr7	128594182	128594183	rs10488631	24871463	Armstrong DL	2014-05-29	Genes Immun	GWAS identifies novel SLE susceptibility genes and explains the association of the HLA region.	Systemic lupus erythematosus	725 European ancestry cases, 2,438 European ancestry controls	NA	7q32.1	TNPO3	rs10488631-C	0.11	2E-13		1.829	[1.684-1.99]	Illumina [NR]	N
1566	chr7	128594182	128594183	rs10488631	22936693	Juran BD	2012-08-29	Hum Mol Genet	Immunochip analyses identify a novel risk locus for primary biliary cirrhosis at 13q14, multiple independent associations at four established risk loci and epistasis between 1p31 and 7q32 risk variants.	Primary biliary cirrhosis	2,216 European ancestry cases, 5,594 Europen ancestry controls	NA	7q32.1	NR	rs10488631-C		3E-12		1.56	[1.38-1.77]	Illumina [109812]	N
1566	chr7	128594182	128594183	rs10488631	21779181	Gorlova O	2011-07-14	PLoS Genet	Identification of novel genetic markers associated with clinical phenotypes of systemic sclerosis through a genome-wide association strategy.	Systemic sclerosis	2,296 European ancestry cases, 5,172 European ancestry controls	3,175 European ancestry cases, 4,210 European ancestry controls	7q32.1	IRF5	rs10488631-?	NR	8E-7	(ATA positive)	1.63	[1.34-1.98]	Illumina [NR] (imputed)	N
1566	chr7	128594182	128594183	rs10488631	21779181	Gorlova O	2011-07-14	PLoS Genet	Identification of novel genetic markers associated with clinical phenotypes of systemic sclerosis through a genome-wide association strategy.	Systemic sclerosis	2,296 European ancestry cases, 5,172 European ancestry controls	3,175 European ancestry cases, 4,210 European ancestry controls	7q32.1	IRF5	rs10488631-?	NR	2E-7	(ACA positive)	1.52	[1.30-1.79]	Illumina [NR] (imputed)	N
1566	chr7	128594182	128594183	rs10488631	21779181	Gorlova O	2011-07-14	PLoS Genet	Identification of novel genetic markers associated with clinical phenotypes of systemic sclerosis through a genome-wide association strategy.	Systemic sclerosis	2,296 European ancestry cases, 5,172 European ancestry controls	3,175 European ancestry cases, 4,210 European ancestry controls	7q32.1	IRF5	rs10488631-?	NR	2E-10	(IcSSc)	1.5	[1.32-1.69]	Illumina [NR] (imputed)	N
1566	chr7	128594182	128594183	rs10488631	21779181	Gorlova O	2011-07-14	PLoS Genet	Identification of novel genetic markers associated with clinical phenotypes of systemic sclerosis through a genome-wide association strategy.	Systemic sclerosis	2,296 European ancestry cases, 5,172 European ancestry controls	3,175 European ancestry cases, 4,210 European ancestry controls	7q32.1	IRF5	rs10488631-?	NR	1E-9	(dcSSc)	1.61	[1.38-1.88]	Illumina [NR] (imputed)	N
1566	chr7	128594182	128594183	rs10488631	21750679	Allanore Y	2011-07-07	PLoS Genet	Genome-wide scan identifies TNIP1, PSORS1C1, and RHOB as novel risk loci for systemic sclerosis.	Systemic sclerosis	564 European ancestry cases, 1,776 European ancestry controls	1,682 European ancestry cases, 3,926 European ancestry controls	7q32.1	TNPO3, IRF5	rs10488631-C	0.09	4E-7		1.35	[1.20-1.51]	Illumina [489814]	N
1566	chr7	128594182	128594183	rs10488631	21408207	Chung SA	2011-03-03	PLoS Genet	Differential genetic associations for systemic lupus erythematosus based on anti-dsDNA autoantibody production.	Systemic lupus erythematosus	811 anti-dsDNA positive European ancestry cases, 906 anti-dsDNA negative European ancestry cases, 4,813 European ancestry controls	NA	7q32.1	IRF5	rs10488631-C	0.11	7E-18	(anti-dsDNA +)	1.92	[1.66-2.22]	Illumina [421318] (imputed)	N
1566	chr7	128594182	128594183	rs10488631	20639880	Liu X	2010-07-18	Nat Genet	Genome-wide meta-analyses identify three loci associated with primary biliary cirrhosis.	Primary biliary cholangitis	453 European ancestry cases, 945 European ancestry controls,	481 European ancestry cases, 3,706 European ancestry controls	7q32.1	TNPO3, IRF5	rs10488631-C	0.11	3E-10		1.63	[NR]	Illumina [276459]	N
1566	chr7	128594182	128594183	rs10488631	20453842	Stahl EA	2010-05-09	Nat Genet	Genome-wide association study meta-analysis identifies seven new rheumatoid arthritis risk loci.	Rheumatoid arthritis	5,539 European ancestry cases, 20,169 European ancestry controls	6,768 European ancestry cases, 8,806 European ancestry controls	7q32.1	IRF5	rs10488631-C	0.11	4E-11		1.19	[NR]	Affymetrix, Illumina [~ 2716259] (imputed)	N
1566	chr7	128594182	128594183	rs10488631	20383147	Radstake TR	2010-04-11	Nat Genet	Genome-wide association study of systemic sclerosis identifies CD247 as a new susceptibility locus.	Systemic sclerosis	2,296 European ancestry cases, 5,171 European ancestry controls	2,753 European ancestry cases, 4,569 European ancestry controls	7q32.1	TNPO, IRF5	rs10488631-C	NR	2E-13		1.5	[1.35-1.67]	Illumina [279621]	N
1566	chr7	128594182	128594183	rs10488631	19458352	Hirschfield GM	2009-05-20	N Engl J Med	Primary biliary cirrhosis associated with HLA, IL12A, and IL12RB2 variants.	Primary biliary cholangitis	505 European ancestry cases, 1,507 European ancestry controls	526 European ancestry cases, 1,206 European ancestry controls	7q32.1	IRF5-TNPO3	rs10488631-G	NR	2E-7		1.52	[1.30-1.78]	Illumina [305724]	N
1566	chr7	128594182	128594183	rs10488631	18204098	Hom G	2008-01-20	N Engl J Med	Association of systemic lupus erythematosus with C8orf13-BLK and ITGAM-ITGAX.	Systemic lupus erythematosus	1,311 European ancestry cases, 3,340 European ancestry controls	793 European ancestry cases, 857 European ancestry controls	7q32.1	TNPO3, IRF5	rs10488631-C	0.12	2E-11				Illumina [502033]	N
1566	chr7	128596804	128596805	rs12539741	26606652	Alarcon-Riquelme ME	2015-11-25	Arthritis Rheumatol	Genome-Wide Association Study in an Amerindian Ancestry Population Reveals Novel Systemic Lupus Erythematosus Risk Loci and the Role of European Admixture.	Systemic lupus erythematosus	862 Native American ancestry-enriched North American cases, 531 Native American ancestry-enriched South American cases, 1,973 Native American ancestry-enriched North American controls, 344 Native American ancestry-enriched South American controls	NA	7q32.1	TNPO3, IRF5	rs12539741-T	0.222	6E-31		2.11	[1.88-2.37]	Illumina [580483] (imputed)	N
1566	chr7	128597586	128597587	rs10236569	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	7q32.1	TNPO3	rs10236569-G	0.661709	1E-11		0.016136568	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1566	chr7	128616581	128616582	rs12706861	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls	NA	7q32.1	IRF5, TNPO3	rs12706861-?	NR	4E-71		1.76	[1.65-1.87]	Illumina [at least 5000000] (imputed)	N
1566	chr7	128617465	128617466	rs12531711	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	8,021 European ancestry cases, 16,489 European ancestry controls	NA	7q32.1		rs12531711-G	NR	9E-41		0.4202	[0.36-0.48] unit increase	NR [5054572] (imputed)	N
1566	chr7	128617465	128617466	rs12531711	29293537	Gorlova OY	2018-01-02	PLoS One	Gene-level association analysis of systemic sclerosis: A comparison of African-Americans and White populations.	Systemic sclerosis	1,833 European ancestry cases, 3,466 European ancestry controls, 291 African American cases, 260 African American controls	NA	7q32.1	TNPO3, IRF5	rs12531711-?		5E-10	(EA)			Illumina [~ 2500000] (imputed)	N
1566	chr7	128617465	128617466	rs12531711	27193031	Marquez A	2016-05-18	Ann Rheum Dis	A combined large-scale meta-analysis identifies COG6 as a novel shared risk locus for rheumatoid arthritis and systemic lupus erythematosus.	Systemic lupus erythematosus or rheumatoid arthritis	2,237 European ancestry systemic lupus erythematosus cases, 3,911 European ancestry rheumatoid arthritis cases, 10,398 European ancestry controls	1,957 European ancestry systemic lupus erythematosus cases, 13,641 European ancestry rheumatoid arthritis cases, 36,509 European ancestry controls	7q32.1	TNPO3, IRF5	rs12531711-?		1E-23	(same effect)	1.45	[NR]	NR [at least 309839] (imputed)	N
1566	chr7	128617465	128617466	rs12531711	23053960	Lee YH	2012-10-07	Mol Biol Rep	Genome-wide pathway analysis of genome-wide association studies on systemic lupus erythematosus and rheumatoid arthritis.	Systemic lupus erythematosus	1,527 European ancestry cases, 3,421 European ancestry controls,	NA	7q32.1	TNPO3	rs12531711-A	NR	6E-13		1.593	[1.403-1.808]	Illumina [737984]	N
1566	chr7	128617465	128617466	rs12531711	21408207	Chung SA	2011-03-03	PLoS Genet	Differential genetic associations for systemic lupus erythematosus based on anti-dsDNA autoantibody production.	Systemic lupus erythematosus	811 anti-dsDNA positive European ancestry cases, 906 anti-dsDNA negative European ancestry cases, 4,813 European ancestry controls	NA	7q32.1	IRF5	rs12531711-G	0.11	6E-9	(anti-dsDNA -)	1.58	[1.36-1.83]	Illumina [421318] (imputed)	N
1566	chr7	128617465	128617466	rs12531711	21399635	Mells GF	2011-03-13	Nat Genet	Genome-wide association study identifies 12 new susceptibility loci for primary biliary cirrhosis.	Primary biliary cholangitis	1,840 European ancestry cases, 5,163 European ancestry controls and (Liu et al)	620 European ancestry cases, 2,514 European ancestry controls	7q32.1	IRF5	rs12531711-G	0.11	9E-17		1.58	[1.41-1.76]	Illumina [507467]	N
1566	chr7	128624072	128624073	rs12534421	29293537	Gorlova OY	2018-01-02	PLoS One	Gene-level association analysis of systemic sclerosis: A comparison of African-Americans and White populations.	Systemic sclerosis	1,833 European ancestry cases, 3,466 European ancestry controls, 291 African American cases, 260 African American controls	NA	7q32.1	IRF5	rs12534421-?	NR	7E-10	(EA)			Illumina [126270]	N
1566	chr7	128624072	128624073	rs12534421	29293537	Gorlova OY	2018-01-02	PLoS One	Gene-level association analysis of systemic sclerosis: A comparison of African-Americans and White populations.	Diffuse cutaneous systemic sclerosis	574 European ancestry cases, 3,466 European ancestry controls, 201 African American cases, 260 African American controls	NA	7q32.1	IRF5	rs12534421-?	NR	4E-6	(EA)			Illumina [126270]	N
1566	chr7	128630312	128630313	rs6969930	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	8,021 European ancestry cases, 16,489 European ancestry controls, 2,495 East Asian ancestry cases, 4,283 East Asian ancestry controls	NA	7q32.1		rs6969930-T	NR	2E-7		0.103826	[0.065-0.143] unit decrease	NR [2787054] (imputed)	N
1566	chr7	128640333	128640334	rs4728144	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	7q32.1		rs4728144-T	NR	2E-8		0.0121	[0.008-0.0162] unit increase	Affymetrix, Illumina [20529698] (imputed)	N
1566	chr7	128647941	128647942	rs13238352	30573655	Acosta-Herrera M	2018-12-20	Ann Rheum Dis	Genome-wide meta-analysis reveals shared new loci in systemic seropositive rheumatic diseases.	Systemic seropositive rheumatic diseases (Systemic sclerosis or systemic lupus erythematosus or rheumatoid arthritis or idiopathic inflammatory myopathies)	up to 4,595 European ancestry rheumatoid arthritis cases, up to 3,154 European ancestry systemic lupus erythematosus cases, up to 2,281 European ancestry systemic sclerosis cases, up to 1,674 European ancestry idiopathic inflammatory myopathy cases, 19,704 European ancestry controls	NA	7q32.1	TNPO3	rs13238352-T	NR	1E-38		1.44	[1.30-1.60]	Illumina [6450125] (imputed)	N
1566	chr7	128651521	128651522	rs36073657	31672989	Lopez-Isac E	2019-10-31	Nat Commun	GWAS for systemic sclerosis identifies multiple risk loci and highlights fibrotic and vasculopathy pathways.	Systemic sclerosis	9,095 European ancestry cases, 17,584 European ancestry controls	NA	7q32.1	IRF5, TNPO3	rs36073657-T	0.1	3E-21		1.4		Illumina [4723365]	N
1566	chr7	128654050	128654051	rs78724056	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	7q32.1	NR	rs78724056-T	0.039	2E-32		1.596	[1.52-1.67]	Illumina [11270530] (imputed)	N
1566	chr7	128663174	128663175	rs13221560	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	7q32.1	TNPO3	rs13221560-G	0.65743	4E-13		0.017251536	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1566	chr7	128664681	128664682	rs57939992	32771030	Tangtanatakul P	2020-08-08	Arthritis Res Ther	Meta-analysis of genome-wide association study identifies FBN2 as a novel locus associated with systemic lupus erythematosus in Thai population.	Systemic lupus erythematosus	487 Thai cases, 1,606 Thai controls	405 Thai cases, 1,590 Thai controls	7q32.1	TNPO3	rs57939992-A	0.15	4E-6		0.6935	[NR]	Illumina [421909] (imputed)	N
1566	chr7	128680462	128680463	rs190334137	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	7q32.1	NR	rs190334137-?	NR	7E-6		0.517461	[0.29-0.74] unit decrease	NR [13958389] (imputed)	N
1566	chr7	128681061	128681062	rs17339836	24097067	Lessard CJ	2013-11-01	Nat Genet	Variants at multiple loci implicated in both innate and adaptive immune responses are associated with Sjogren's syndrome.	Sjogren's syndrome	395 European ancestry cases, 1,975 European ancestry controls	1,243 European ancestry cases, 4,779 European ancestry controls	7q32.1	IRF5, TNPO3	rs17339836-T	0.12	2E-16		1.58	[1.36-1.84]	Illumina [648937]	N
1566	chr7	128683538	128683539	rs35188261	22961000	Liu JZ	2012-10-01	Nat Genet	Dense fine-mapping study identifies new susceptibility loci for primary biliary cirrhosis.	Primary biliary cirrhosis	2,861 British and Irish ancestry cases, 8,514 British and Irish ancestry controls	NA		IRF5, TNPO3	rs35188261-A	0.17	7E-22		1.52	[1.39-1.63]	Illumina [237619] (imputed)	N
1566	chr7	128684315	128684316	rs62478615	24387989	Mayes MD	2014-01-02	Am J Hum Genet	Immunochip analysis identifies multiple susceptibility loci for systemic sclerosis.	Systemic sclerosis	671 European ancestry ACA-positive cases, 347 European ancestry ATA-positive cases, 815 European ancestry cases, 3,466 European ancestry controls	1,387 European ancestry ACA-positive cases, 896 European ancestry ATA-positive cases, 1,734 European ancestry cases, 5,935 European ancestry controls	7q32.1	IRF5	rs62478615-?		1E-10		1.53		Illumina [126270]	N
1566	chr7	128692709	128692710	rs6961014	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Age at menopause	approximately 143,000 European ancestry individuals	NA	7q32.1		rs6961014-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1566	chr7	128695645	128695646	rs3757384	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	7q32.1	NR	rs3757384-?	NR	1E-24				Affymetrix [NR]	N
1566	chr7	128695981	128695982	rs28364822	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	7q32.1	NR	rs28364822-A	0.028	1E-17		1.672	[1.55-1.79]	Illumina [11270530] (imputed)	N
1566	chr7	128695982	128695983	rs13239597	29293537	Gorlova OY	2018-01-02	PLoS One	Gene-level association analysis of systemic sclerosis: A comparison of African-Americans and White populations.	Limited cutaneous systemic scleroderma	1,087 European ancestry cases, 3,466 European ancestry controls, 82 African American cases, 260 African American controls	NA	7q32.1	TNPO3	rs13239597-?	NR	9E-7				Illumina [126270]	N
1566	chr7	128695982	128695983	rs13239597	23740937	Martin JE	2013-06-10	Hum Mol Genet	A systemic sclerosis and systemic lupus erythematosus pan-meta-GWAS reveals new shared susceptibility loci.	Systemic lupus erythematosus and Systemic sclerosis	up to 2,761 European ancestry systemic sclerosis cases, 769 European ancestry systemic lupus erythematosus cases, 7,381 European ancestry controls	up to 1,578 European ancestry systemic sclerosis cases, 1,727 European ancestry systemic lupus erythematosus cases, 6,893 European ancestry controls	7q32.1	TNPO3, IRF5	rs13239597-?	NR	1E-29		1.664	[NR]	Illumina [NR]	N
1566	chr7	128701915	128701916	rs73465029	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	7q32.1		rs73465029-C	NR	1E-8		0.015	[0.0099-0.0201] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
1566	chr7	128708121	128708122	rs17424921	30247649	Gonzalez-Serna D	2018-09-21	Rheumatology (Oxford)	Analysis of the genetic component of systemic sclerosis in Iranian and Turkish populations through a genome-wide association study.	Systemic sclerosis	764 Middle Eastern ancestry cases, 1,343 Middle Eastern ancestry controls	NA	7q32.1	IRF5, TNPO3	rs17424921-C	NR	1E-7		1.68	[1.39-2.03]	Illumina [5698748] (imputed)	N
1566	chr7	128708796	128708797	rs17340351	29293537	Gorlova OY	2018-01-02	PLoS One	Gene-level association analysis of systemic sclerosis: A comparison of African-Americans and White populations.	Systemic sclerosis (anti-topoisomerase-positive)	347 European ancestry cases, 3,466 European ancestry controls, 69 African American cases, 260 African American controls	NA	7q32.1	TNPO3	rs17340351-?	NR	1E-8	(EA)			Illumina [126270]	N
1566	chr7	128708796	128708797	rs17340351	29293537	Gorlova OY	2018-01-02	PLoS One	Gene-level association analysis of systemic sclerosis: A comparison of African-Americans and White populations.	Systemic sclerosis	1,833 European ancestry cases, 3,466 European ancestry controls, 291 African American cases, 260 African American controls	NA	7q32.1	TNPO3	rs17340351-?	NR	2E-10	(EA)			Illumina [126270]	N
1566	chr7	128708796	128708797	rs17340351	29293537	Gorlova OY	2018-01-02	PLoS One	Gene-level association analysis of systemic sclerosis: A comparison of African-Americans and White populations.	Diffuse cutaneous systemic sclerosis	574 European ancestry cases, 3,466 European ancestry controls, 201 African American cases, 260 African American controls	NA	7q32.1	TNPO3	rs17340351-?	NR	7E-7	(EA)			Illumina [126270]	N
1567	chr7	128717905	128717906	rs12537284	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	7q32.1	NR	rs12537284-A	NR	7E-22		0.0335	[0.027-0.04] unit increase	Affymetrix [9000000] (imputed)	N
1567	chr7	128717905	128717906	rs12537284	18204446	Harley JB	2008-01-20	Nat Genet	Genome-wide association scan in women with systemic lupus erythematosus identifies susceptibility variants in ITGAM, PXK, KIAA1542 and other loci.	Systemic lupus erythematosus	720 European ancestry female cases, 2,337 European ancestry female controls	1,846 European ancestry female cases, 1,825 European ancestry female controls	7q32.1	TNPO3, IRF5	rs12537284-A	0.13	4E-19		1.54	[1.40-1.70]	Illumina [317501]	N
1567	chr7	128721876	128721877	rs34591253	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	7q32.1		rs34591253-T	NR	9E-9		0.0765	[0.05-0.103] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1567	chr7	128721876	128721877	rs34591253	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	7q32.1	snoU13	rs34591253-T	0.135132	1E-8		0.076426096	[0.05-0.103] unit increase	Affymetrix [7288503] (imputed)	N
1567	chr7	128732785	128732786	rs35163364	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	7q32.1		rs35163364-C	0.567933	4E-10		0.0246956	[0.017-0.032] unit increase	NR [11722792] (imputed)	N
1567	chr7	128732785	128732786	rs35163364	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	7q32.1		rs35163364-C	0.567933	3E-8		0.0222868	[0.014-0.03] unit increase	NR [11722792] (imputed)	N
1567	chr7	128732785	128732786	rs35163364	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	7q32.1		rs35163364-C	0.567933	2E-9		0.0242702	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
1567	chr7	128732785	128732786	rs35163364	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	7q32.1		rs35163364-C	0.567933	4E-8		0.0215866	[0.014-0.029] unit increase	NR [11722792] (imputed)	N
1567	chr7	128732785	128732786	rs35163364	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to monounsaturated fatty acids	115,006 European ancestry individuals	NA	7q32.1		rs35163364-C	0.567939	7E-9		0.0231875	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
1567	chr7	128732785	128732786	rs35163364	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of monounsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	7q32.1		rs35163364-C	0.567939	3E-9		0.0238538	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
1567	chr7	128732785	128732786	rs35163364	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	7q32.1		rs35163364-C	0.567933	2E-9		0.0237905	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
1567	chr7	128732785	128732786	rs35163364	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	7q32.1		rs35163364-C	0.567933	2E-8		0.0224704	[0.015-0.03] unit decrease	NR [11722792] (imputed)	N
1567	chr7	128732785	128732786	rs35163364	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	7q32.1		rs35163364-C	0.567933	2E-8		0.0223148	[0.015-0.03] unit decrease	NR [11722792] (imputed)	N
1567	chr7	128732785	128732786	rs35163364	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	7q32.1		rs35163364-C	0.567933	2E-9		0.0238849	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
1567	chr7	128732785	128732786	rs35163364	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	7q32.1		rs35163364-C	0.567933	3E-9		0.0233046	[0.016-0.031] unit decrease	NR [11722792] (imputed)	N
1567	chr7	128732785	128732786	rs35163364	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	7q32.1		rs35163364-C	0.567933	9E-9		0.0225344	[0.015-0.03] unit decrease	NR [11722792] (imputed)	N
1567	chr7	128732785	128732786	rs35163364	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	7q32.1		rs35163364-C	0.567933	2E-9		0.0238079	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
1567	chr7	128732785	128732786	rs35163364	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	7q32.1		rs35163364-C	0.567933	1E-8		0.0223671	[0.015-0.03] unit decrease	NR [11722792] (imputed)	N
1567	chr7	128737957	128737958	rs56088330	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	7q32.1		rs56088330-A	NR	6E-24		0.0176	[0.014-0.021] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
1567	chr7	128737957	128737958	rs56088330	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	7q32.1	RP11-286H14.4, TSPAN33	rs56088330-T	0.6814	8E-10		6.143	NR z score increase	Illumina [26237160] (imputed)	N
1567	chr7	128738261	128738262	rs35994853	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	7q32.1		rs35994853-T	NR	1E-15		0.0151	[0.011-0.019] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
1567	chr7	128738481	128738482	rs7795876	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	7q32.1	NR	rs7795876-T	0.45	1E-13		0.0137	[0.01-0.017] unit increase	NR [NR]	N
1567	chr7	128740442	128740443	rs6973520	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	7q32.1		rs6973520-T	NR	6E-9		0.0117	[0.0078-0.0156] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
1567	chr7	128742163	128742164	rs7779637	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	7q32.1	NR	rs7779637-G	NR	3E-12		0.0168	[0.012-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
1567	chr7	128742220	128742221	rs7779671	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Creatinine levels	110,051 European ancestry individuals	NA	7q32.1		rs7779671-A	0.492632	2E-9		0.0212974	[0.014-0.028] unit increase	NR [11722792] (imputed)	N
1567	chr7	128744708	128744709	rs10225866	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	7q32.1		rs10225866-C	0.597638	2E-10		0.0262817	[0.018-0.034] unit increase	NR [11722792] (imputed)	N
1567	chr7	128744708	128744709	rs10225866	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	7q32.1		rs10225866-C	0.597638	6E-11		0.0265238	[0.019-0.034] unit increase	NR [11722792] (imputed)	N
1567	chr7	128744708	128744709	rs10225866	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	7q32.1		rs10225866-C	0.597638	2E-9		0.0241312	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
1567	chr7	128744708	128744709	rs10225866	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	7q32.1		rs10225866-C	0.597638	6E-9		0.0238855	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
1567	chr7	128744980	128744981	rs2013044	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	7q32.1		rs2013044-C	0.597584	4E-10		0.0258349	[0.018-0.034] unit increase	NR [11722792] (imputed)	N
1567	chr7	128772366	128772367	rs532602679	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	7q32.1		rs532602679-A	0.014832432	3E-8		0.24779755	[0.16-0.34] unit increase	Illumina [13134967] (imputed)	N
1567	chr7	128772366	128772367	rs532602679	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	7q32.1		rs532602679-A	NR	3E-8		0.2478	[0.16-0.34] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1567	chr7	128790190	128790191	rs34534607	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder	29,475 European ancestry cases, 63,482 European ancestry controls	NA	7q32.1	NR	rs34534607-T	0.201176	6E-6		1.071	[1.04-1.1]	Affymetrix [7791636] (imputed)	N
1567	chr7	128843409	128843410	rs143083812	34450027	Boer CG	2021-08-24	Cell	Deciphering osteoarthritis genetics across 826,690 individuals from 9 populations.	Osteoarthritis (with total hip replacement)	23,021 European ancestry cases, 296,016 European ancestry controls	NA	7q32.1		rs143083812-T	0.0011	1E-11		3.3025668	[2.339511934-4.662061198]	Affymetrix, Illumina [NR] (imputed)	N
1567	chr7	128843409	128843410	rs143083812	30374069	Styrkarsdottir U	2018-10-29	Nat Genet	Meta-analysis of Icelandic and UK data sets identifies missense variants in SMO, IL11, COL11A1 and 13 more new loci associated with osteoarthritis.	Osteoarthritis (hip)	17,151 European ancestry cases, 596,639 European ancestry controls	NA	7q32.1	SMO	rs143083812-T	NR	8E-12	(additive)	2.84	[2.11-3.83]	Affymetrix, Illumina [11554240] (imputed)	N
1568	chr7	128886820	128886821	rs6942756	25663218	Verhaaren BF	2015-07-02	Circ Cardiovasc Genet	Multiethnic genome-wide association study of cerebral white matter hyperintensities on MRI.	White matter hyperintensity burden	17,936 European ancestry individuals, 1,943 African American ancestry individuals, 795 Hispanic individuals, 204 Chinese ancestry individuals, 201 Malay ancestry individuals	NA	7q32.1	AHCYL2	rs6942756-G	0.25	9E-7				Affymetrix, Illumina [14227402] (imputed)	N
1568	chr7	128886820	128886821	rs6942756	25663218	Verhaaren BF	2015-07-02	Circ Cardiovasc Genet	Multiethnic genome-wide association study of cerebral white matter hyperintensities on MRI.	White matter hyperintensity burden	17,936 European ancestry individuals, 1,943 African American ancestry individuals, 795 Hispanic individuals, 204 Chinese ancestry individuals, 201 Malay ancestry individuals	NA	7q32.1	AHCYL2	rs6942756-G	0.25	8E-7	(EA)			Affymetrix, Illumina [14227402] (imputed)	N
1569	chr7	128993755	128993756	rs11979476	22228203	Aslibekyan S	2012-01-05	Pharmacogenet Genomics	A genome-wide association study of inflammatory biomarker changes in response to fenofibrate treatment in the Genetics of Lipid Lowering Drug and Diet Network.	Inflammatory biomarkers	1,092 European ancestry individuals	NA	7q32.1	AHCYL2	rs11979476-?	NR	2E-6	(Tumor necrosis factor-a)			Affymetrix [2543887] (imputed)	N
1569	chr7	129004846	129004847	rs11766298	22890011	Frazier-Wood AC	2012-08-09	Pharmacogenet Genomics	Genome-wide association study indicates variants associated with insulin signaling and inflammation mediate lipoprotein responses to fenofibrate.	Response to fenofibrate	817 European ancestry individuals	NA	7q32.1	AHCLY2	rs11766298-T	NR	4E-9	(VLDL diameter)	4.41	[2.96-5.86] unit increase	Affymetrix [~ 2543887] (imputed)	N
1569	chr7	129010522	129010523	rs180825777	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7q32.1		rs180825777-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1569	chr7	129010862	129010863	rs11772187	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q32.1	NR	rs11772187-T	0.214407	6E-14				Affymetrix, Illumina [24653286] (imputed)	N
1569	chr7	129023596	129023597	rs7787531	20694014	Thye T	2010-08-08	Nat Genet	Genome-wide association analyses identifies a susceptibility locus for tuberculosis on chromosome 18q11.2.	Tuberculosis	2,237 Sub-Saharan African ancestry cases, 3,122 Sub-Saharan African ancestry controls	1,462 Sub-Saharan African ancestry cases, 4,604 Sub-Saharan African ancestry controls	7q32.1	NR	rs7787531-?	0.29	9E-6		1.22	[1.10-1.30]	Affymetrix [> 333754] (imputed)	N
1569	chr7	129048939	129048940	rs9690544	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	7q32.1	AHCYL2	rs9690544-C	0.272432	4E-12		0.017262695	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1569	chr7	129048939	129048940	rs9690544	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	7q32.1	AHCYL2	rs9690544-C	0.272429	2E-10		0.015745206	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1569	chr7	129048939	129048940	rs9690544	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	7q32.1	NR	rs9690544-C	0.273235	7E-17		0.017332	[0.013-0.021] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
1569	chr7	129048939	129048940	rs9690544	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q32.1	NR	rs9690544-C	0.214943	1E-12				Affymetrix, Illumina [24558453] (imputed)	N
1569	chr7	129048939	129048940	rs9690544	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	7q32.1	NR	rs9690544-C	0.27319	1E-15		0.016605	[0.013-0.021] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
1570	chr7	129197407	129197408	rs691184	28644415	Guenard F	2017-06-23	Nutrients	Genome-Wide Association Study of Dietary Pattern Scores.	Prudent dietary pattern	141 individuals	NA	7q32.1	SMKR1	rs691184-?		7E-7				Illumina [2668805]	N
1570	chr7	129209051	129209052	rs11769676	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	7q32.1		rs11769676-A	0.402127	1E-9		0.013754545	[0.0093-0.0182] unit decrease	Affymetrix [93095623] (imputed)	N
1570	chr7	129209051	129209052	rs11769676	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	7q32.1		rs11769676-?	NR	1E-13				NR [~ 8900000] (imputed)	N
1570	chr7	129211488	129211489	rs690686	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	7q32.1		rs690686-T	0.087956	6E-14		0.029930878	[0.022-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
1570	chr7	129211488	129211489	rs690686	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	7q32.1	NR	rs690686-C	0.911838	4E-21		0.032025	[0.025-0.039] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1570	chr7	129214417	129214418	rs896156	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q32.1	NR	rs896156-T	0.0882662	2E-19				Affymetrix, Illumina [17210439] (imputed)	N
1570	chr7	129221782	129221783	rs10954244	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	7q32.1		rs10954244-A	0.087	7E-12				Affymetrix [10369434] (imputed)	N
1570	chr7	129228997	129228998	rs4731601	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	7q32.1		rs4731601-G	0.9220189	3E-9		0.024981704	[0.017-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
1570	chr7	129233060	129233063	rs141960938	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	7q32.1		rs141960938-C	0.9128281	1E-15		0.032256342	[0.024-0.04] unit increase	Affymetrix [93095623] (imputed)	N
1571	chr7	129244664	129244665	rs9792084	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	7q32.2		rs9792084-C	NR	2E-21		0.0337	[0.027-0.041] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1571	chr7	129244664	129244665	rs9792084	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	7q32.2	RP11-448A19.1	rs9792084-C	0.9114845	5E-18		0.034366228	[0.027-0.042] unit decrease	Affymetrix [93095623] (imputed)	N
1571	chr7	129249772	129249773	rs6961102	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	7q32.2	RP11-448A19.1	rs6961102-A	0.9111	2E-9		0.0376252	[0.025-0.05] unit increase	Affymetrix [~ 2500000] (imputed)	N
1571	chr7	129260506	129260507	rs7803431	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	7q32.2		rs7803431-G	0.938548	5E-9		0.0409369	[0.027-0.055] unit decrease	Illumina [13478928] (imputed)	N
1571	chr7	129267300	129267301	rs77516904	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	7q32.2	NRF1, RNA5SP244, MIR182, MIR96, MIR183	rs77516904-G	0.03700000000000003	4E-6		1.1497028		NR [9372253] (imputed)	N
1571	chr7	129281918	129281919	rs7788849	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	7q32.2	NRF1	rs7788849-A	0.9023	6E-13		0.04428243	[0.032-0.056] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1571	chr7	129303372	129303373	rs7789516	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	7q32.2	NRF1	rs7789516-C	0.9022	6E-9		0.0359149	[0.024-0.048] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1571	chr7	129356205	129356206	rs9641855	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	7q32.2	NRF1	rs9641855-G	0.335	2E-6	(Sleep duration )	0.02	[NR] min/d increase	Illumina [899892]	N
1571	chr7	129357829	129357830	rs17556694	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	7q32.2	NR	rs17556694-T	NR	3E-9		0.03	[0.02-0.04] unit decrease	Affymetrix [9000000] (imputed)	N
1572	chr7	129396173	129396174	rs11557288	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	7q32.2	NRF1	rs11557288-G	NR	2E-8		0.0225048	[0.014-0.031] unit decrease	Affymetrix [16832071] (imputed)	N
1572	chr7	129405773	129405774	rs2402960	27622933	Li QS	2016-09-13	Transl Psychiatry	Analysis of 23andMe antidepressant efficacy survey data: implication of circadian rhythm and neuroplasticity in bupropion response.	Response to antidepressants and depression	7,795 European ancestry responder cases, 191,173 European ancestry healthy controls	NA	7q32.2	NRF1, UBE2H	rs2402960-?		8E-7		1.098901	[1.06-1.14]	Illumina [~ 12000000] (imputed)	N
1572	chr7	129445210	129445211	rs2727513	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 2, vertical position of orbits relative to midface)	2,187 European ancestry individuals	NA	7q32.2	NR	rs2727513-T	0.2748	4E-6		0.1564	[0.09-0.223] unit increase	Illumina [10677593] (imputed)	N
1572	chr7	129466885	129466886	rs2727457	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	7q32.2		rs2727457-?	NR	8E-8				NR [~ 8900000] (imputed)	N
1572	chr7	129477663	129477664	rs78642866	34387878	Kim KY	2021-08-13	Hepatology	Genome-wide association of individual vulnerability with alcoholic liver disease: A Korean Genome and Epidemiology Study.	Alcohol-associated liver disease in light drinkers	1,379 Korean ancestry cases, 13,132 Korean ancestry controls	NA	7q32.2		rs78642866-?	NR	1E-6		1.883	[1.456-2.435]	Affymetrix [7975321] (imputed)	N
1572	chr7	129490074	129490075	rs55748031	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	7q32.2	UBE2H	rs55748031-T	0.907	6E-7		0.0026	[0.0014-0.0038] unit decrease	Affymetrix [NR] (imputed)	N
1573	chr7	129502460	129502461	rs2727464	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q32.2	NR	rs2727464-A	0.625997	2E-10				Affymetrix, Illumina [23472807] (imputed)	N
1573	chr7	129505831	129505832	rs3807121	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	7q32.2	NR	rs3807121-G	0.297961	2E-11		0.013808	[0.0098-0.0178] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1573	chr7	129531692	129531693	rs17559301	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Varicose veins	22,037 European ancestry cases, 437,665 European ancestry controls, 474 East Asian ancestry cases, 178,252 East Asian ancestry controls	NA	7q32.2		rs17559301-C	NR	1E-10		0.121	[0.084-0.158] unit decrease	Affymetrix, Illumina [25842955] (imputed)	N
1573	chr7	129546051	129546052	rs56323117	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	7q32.2	UBE2H	rs56323117-T	0.124557	1E-9		0.021225588	[0.014-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1573	chr7	129556314	129556316	rs199964216	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	7q32.2	UBE2H	rs199964216-T	0.845108	5E-9		0.01857775	[0.012-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1573	chr7	129564133	129564134	rs62491533	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	7q32.2	UBE2H	rs62491533-T	0.8097	1E-18		0.0027	[0.0019-0.0035] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
1573	chr7	129564133	129564134	rs62491533	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	7q32.2	UBE2H	rs62491533-T	0.829	9E-16		0.0027	[0.0017-0.0037] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
1573	chr7	129583366	129583371	rs142473361	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	7q32.2		rs142473361-G	NR	3E-11		0.0215	[0.015-0.028] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
1573	chr7	129583367	129583373	rs386717792	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	7q32.2	UBE2H	rs386717792-T	0.151634	6E-13		0.02281008	[0.017-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1573	chr7	129583933	129583934	rs62489376	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q32.2	NR	rs62489376-C	0.180086	6E-14				Affymetrix, Illumina [24332387] (imputed)	N
1573	chr7	129584603	129584604	rs80115810	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q32.2	NR	rs80115810-A	0.173517	4E-11				Affymetrix, Illumina [23467995] (imputed)	N
1573	chr7	129589796	129589797	rs62489382	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	7q32.2	NR	rs62489382-T	0.1662	2E-13		0.018456	[0.014-0.023] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
1573	chr7	129591806	129591807	rs34926272	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	7q32.2		rs34926272-C	NR	2E-10		0.0194	[0.013-0.025] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
1573	chr7	129591806	129591807	rs34926272	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	7q32.2		rs34926272-C	0.519797	2E-8		0.0127149	[0.0083-0.0171] unit increase	Illumina [13479295] (imputed)	N
1573	chr7	129592509	129592510	rs1045897	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	7q32.2	UBE2H	rs1045897-T	0.154925	5E-11		0.020633906	[0.014-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1573	chr7	129600534	129600535	rs62489385	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	7q32.2		rs62489385-G	NR	2E-10		0.0211	[0.015-0.028] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
1573	chr7	129600534	129600535	rs62489385	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	7q32.2		rs62489385-G	NR	2E-8		0.0186	[0.012-0.025] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
1573	chr7	129602878	129602879	rs2140875	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	7q32.2		rs2140875-A	0.186	1E-9		0.09	[0.06-0.11] % increase	Affymetrix [NR] (imputed)	N
1573	chr7	129602878	129602879	rs2140875	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	7q32.2	RP11-306G20.1	rs2140875-G	0.813924	2E-9		0.017431743	[0.012-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1573	chr7	129602878	129602879	rs2140875	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	7q32.2	RP11-306G20.1	rs2140875-G	0.81411	6E-17		0.0222643	[0.017-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1573	chr7	129602878	129602879	rs2140875	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	7q32.2	RP11-306G20.1	rs2140875-G	0.814083	2E-14		0.021930967	[0.016-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
1573	chr7	129602878	129602879	rs2140875	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q32.2	NR	rs2140875-G	0.737146	2E-18				Affymetrix, Illumina [24246363] (imputed)	N
1573	chr7	129602878	129602879	rs2140875	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	7q32.2	NR	rs2140875-G	0.810448	1E-21		0.022817	[0.018-0.027] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1573	chr7	129602878	129602879	rs2140875	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q32.2	NR	rs2140875-G	0.733464	3E-13				Affymetrix, Illumina [20825802] (imputed)	N
1573	chr7	129602878	129602879	rs2140875	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	7q32.2	NR	rs2140875-G	0.813445	2E-15		0.019882	[0.015-0.025] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
1573	chr7	129602878	129602879	rs2140875	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	7q32.2		rs2140875-?	NR	4E-13				NR [~ 8900000] (imputed)	N
1573	chr7	129602878	129602879	rs2140875	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	7q32.2	RP11-306G20.1	rs2140875-G	0.8066	2E-9		0.02728887	[0.018-0.036] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1574	chr7	129630375	129630376	rs117426182	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	7q32.2		rs117426182-?	NR	7E-9				NR [~ 8900000] (imputed)	N
1574	chr7	129640786	129640787	rs181021474	32592749	Butler-Laporte G	2020-06-24	Clin Microbiol Infect	Elevated body-mass index is associated with an increased risk of infectious disease admissions and mortality: a mendelian randomization study.	Sepsis (28-day mortality)	210 European ancestry cases, 1,827 European ancestry controls	NA	7q32.2	RP11-306G20.1	rs181021474-T	0.99	3E-8		0.33	[0.21-0.45] unit decrease	NR [NR]	N
1574	chr7	129655875	129655876	rs10265116	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	7q32.2	RP11-306G20.1	rs10265116-A	0.245066	2E-10		0.016714785	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1574	chr7	129663495	129663496	rs11556924	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	7q32.2		rs11556924-T	0.38	1E-12		7.13	z score increase	Affymetrix [9061022] (imputed)	N
1574	chr7	129663495	129663496	rs11556924	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	7q32.2		rs11556924-T	NR	5E-13		0.0138	[0.01-0.018] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
1574	chr7	129663495	129663496	rs11556924	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	7q32.2		rs11556924-T	NR	1E-11		0.0133	[0.0094-0.0172] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
1574	chr7	129663495	129663496	rs11556924	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	7q32.2		rs11556924-T	NR	7E-13		0.0171	[0.012-0.022] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1574	chr7	129663495	129663496	rs11556924	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	7q32.2	NR	rs11556924-T	0.3866	4E-8				NR [9056863] (imputed)	N
1574	chr7	129663495	129663496	rs11556924	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	7q32.2	ZC3HC1	rs11556924-C	0.663201	6E-14		1.06	[1.05-1.08]	NR [8126035] (imputed)	N
1574	chr7	129663495	129663496	rs11556924	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	7q32.2	ZC3HC1	rs11556924-?	NR	1E-17		0.0509404	[0.039-0.063] unit decrease	Illumina [4804024] (imputed)	N
1574	chr7	129663495	129663496	rs11556924	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	7q32.2	ZC3HC1	rs11556924-T	0.388957	4E-14		0.017128788	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1574	chr7	129663495	129663496	rs11556924	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	7q32.2	ZC3HC1	rs11556924-T	0.389025	1E-13		0.016891144	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1574	chr7	129663495	129663496	rs11556924	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	7q32.2	ZC3HC1	rs11556924-T	0.388961	1E-12		0.01610524	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1574	chr7	129663495	129663496	rs11556924	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	7q32.2	ZC3HC1	rs11556924-T	0.389006	2E-14		0.01729492	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1574	chr7	129663495	129663496	rs11556924	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	7q32.2	ZC3HC1	rs11556924-T	0.388975	2E-11		0.01512085	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1574	chr7	129663495	129663496	rs11556924	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q32.2	NR	rs11556924-T	0.301138	2E-18				Affymetrix, Illumina [24649327] (imputed)	N
1574	chr7	129663495	129663496	rs11556924	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	7q32.2	NR	rs11556924-T	0.384493	3E-20		0.017621	[0.014-0.021] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
1574	chr7	129663495	129663496	rs11556924	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	7q32.2	NR	rs11556924-C	0.615166	1E-10		0.012634	[0.0088-0.0165] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
1574	chr7	129663495	129663496	rs11556924	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	7q32.2	NR	rs11556924-T	0.385273	2E-14		0.015246	[0.011-0.019] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
1574	chr7	129663495	129663496	rs11556924	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q32.2	NR	rs11556924-T	0.302057	2E-15				Affymetrix, Illumina [24653286] (imputed)	N
1574	chr7	129663495	129663496	rs11556924	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	7q32.2	NR	rs11556924-T	0.384498	2E-16		0.015833	[0.012-0.02] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
1574	chr7	129663495	129663496	rs11556924	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q32.2	NR	rs11556924-T	0.304231	9E-12				Affymetrix, Illumina [24558453] (imputed)	N
1574	chr7	129663495	129663496	rs11556924	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q32.2	NR	rs11556924-T	0.324113	1E-15				Affymetrix, Illumina [19872809] (imputed)	N
1574	chr7	129663495	129663496	rs11556924	32469254	Matsunaga H	2020-05-29	Circ Genom Precis Med	Transethnic Meta-analysis of Genome-wide Association Studies Identifies Three New Loci and Characterizes Population-specific Differences for Coronary Artery Disease.	Coronary artery disease	15,302 Japanese ancestry cases, 76,014 European and East Asian ancestry cases, 36,140 Japanese ancestry controls, 264,785 European and East Asian ancestry controls	NA	7q32.2	ZC3HC1	rs11556924-C	0.7	5E-14		1.07	[1.03-1.11]	Illumina [5167567] (imputed)	N
1574	chr7	129663495	129663496	rs11556924	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	7q32.2	ZC3HC1	rs11556924-T		8E-12		0.015	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
1574	chr7	129663495	129663496	rs11556924	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	7q32.2	NR	rs11556924-T	0.389328	1E-9		0.00823325	[0.0056-0.0108] unit increase	Affymetrix [16578495] (imputed)	N
1574	chr7	129663495	129663496	rs11556924	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	7q32.2	NR	rs11556924-T	0.38929400000000003	5E-18		0.00772855	[0.006-0.0094] unit increase	Affymetrix [16582909] (imputed)	N
1574	chr7	129663495	129663496	rs11556924	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	7q32.2	NR	rs11556924-T	0.389097	3E-18		0.0112773	[0.0088-0.0138] unit increase	Affymetrix [16585854] (imputed)	N
1574	chr7	129663495	129663496	rs11556924	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	7q32.2	NR	rs11556924-T	0.38929400000000003	2E-19		0.00881671	[0.0069-0.0107] unit increase	Affymetrix [16582965] (imputed)	N
1574	chr7	129663495	129663496	rs11556924	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	7q32.2	NR	rs11556924-T	0.389097	6E-16		0.0121614	[0.0093-0.015] unit increase	Affymetrix [16585866] (imputed)	N
1574	chr7	129663495	129663496	rs11556924	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls	NA	7q32.2	RP11-306G20.1	rs11556924-T	0.389692	5E-9		0.048157666	[0.032-0.064] unit decrease	Affymetrix [7288503] (imputed)	N
1574	chr7	129663495	129663496	rs11556924	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	7q32.2	RP11-306G20.1	rs11556924-T	0.389132	3E-9		0.036513567	[0.024-0.049] unit decrease	Affymetrix [7288503] (imputed)	N
1574	chr7	129663495	129663496	rs11556924	30642433	Timmers PR	2019-01-15	Elife	Genomics of 1 million parent lifespans implicates novel pathways and common diseases and distinguishes survival chances.	Parental lifespan	at least 500,193 European ancestry offspring	NA	7q32.2	ZC3HC1	rs11556924-T	0.386	4E-7		0.0202	[0.012-0.028] unit increase	NR [up to 9000000] (imputed)	N
1574	chr7	129663495	129663496	rs11556924	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	7q32.2		rs11556924-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1574	chr7	129663495	129663496	rs11556924	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	7q32.2		rs11556924-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1574	chr7	129663495	129663496	rs11556924	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7q32.2		rs11556924-?	NR	1E-19				NR [~ 8900000] (imputed)	N
1574	chr7	129663495	129663496	rs11556924	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	7q32.2		rs11556924-?	NR	2E-13				NR [~ 8900000] (imputed)	N
1574	chr7	129663495	129663496	rs11556924	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	7q32.2	ZC3HC1	rs11556924-T	0.3624	1E-23		0.0548	[0.044-0.066] unit decrease	Affymetrix [at least 7947838] (imputed)	N
1574	chr7	129663495	129663496	rs11556924	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	7q32.2	ZC3HC1	rs11556924-T	0.3761	2E-18		0.0575	[0.045-0.07] unit decrease	NR [8041861] (imputed)	N
1574	chr7	129663495	129663496	rs11556924	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	7q32.2	ZC3HC1	rs11556924-T	0.36	1E-24		0.0618	[0.05-0.074] unit decrease	NR [8041861] (imputed)	N
1574	chr7	129663495	129663496	rs11556924	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	7q32.2	ZC3HC1	rs11556924-T	0.36	1E-24		0.062	[0.05-0.074] unit decrease	Affymetrix [7947838] (imputed)	N
1574	chr7	129663495	129663496	rs11556924	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Systolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	7q32.2	ZC3HC1	rs11556924-T	0.357	6E-6	(EA, initial)	0.356	[0.2-0.51] unit decrease	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
1574	chr7	129663495	129663496	rs11556924	28714975	Nelson CP	2017-07-17	Nat Genet	Association analyses based on false discovery rate implicate new loci for coronary artery disease.	Coronary artery disease (myocardial infarction, percutaneous transluminal coronary angioplasty, coronary artery bypass grafting, angina or chromic ischemic heart disease)	18,467 European and unknown ancestry cases, 45,264 European and unknown ancestry controls	57,347 European and unknown ancestry cases, 219,521 European and unknown ancestry controls	7q32.2	ZC3HC1	rs11556924-C	0.657	6E-13		1.07	[1.05-1.09]	Affymetrix [9149595] (imputed)	N
1574	chr7	129663495	129663496	rs11556924	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count (basophil)	171,846 European ancestry individuals	NA	7q32.2	ZC3HC1	rs11556924-T	0.3882	1E-11		0.02430695	[0.017-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
1574	chr7	129663495	129663496	rs11556924	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	7q32.2	ZC3HC1	rs11556924-T	0.3885	4E-9		0.02204853	[0.015-0.029] unit increase	Affymetrix [~ 2500000] (imputed)	N
1574	chr7	129663495	129663496	rs11556924	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	7q32.2	ZC3HC1	rs11556924-T	0.3886	2E-12		0.02635892	[0.019-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
1574	chr7	129663495	129663496	rs11556924	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	7q32.2	ZC3HC1	rs11556924-C		4E-6		0.193	unit increase	Affymetrix [at least 2696785] (imputed)	N
1574	chr7	129663495	129663496	rs11556924	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	7q32.2	ZC3HC1	rs11556924-C		8E-13		0.181	unit increase	Affymetrix [at least 2696785] (imputed)	N
1574	chr7	129663495	129663496	rs11556924	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Systolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	7q32.2	ZC3HC1	rs11556924-T	0.384	8E-9		0.2705	[0.18-0.36] mm Hg decrease	Affymetrix, Illumina, Perlegen [128272]	N
1574	chr7	129663495	129663496	rs11556924	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Diastolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	7q32.2	ZC3HC1	rs11556924-T	0.384	8E-15		0.2141	[0.16-0.27] mm Hg decrease	Affymetrix, Illumina, Perlegen [128272]	N
1574	chr7	129663495	129663496	rs11556924	26343387	Nikpay M	2015-09-07	Nat Genet	A comprehensive 1,000 Genomes-based genome-wide association meta-analysis of coronary artery disease.	Myocardial infarction	27,509 European ancestry cases, 130 African American cases, 278 Hispanic American cases, 10,257 South Asian ancestry cases, 288 Lebanese ancestry cases, 1,687 East Asian ancestry cases, 99,121 European ancestry controls, 2,778 African American controls, 3,337 Hispanic American controls, 12,899 South Asian ancestry controls, 466 Lebanese ancestry controls, 7,709 East Asian ancestry controls	NA	7q32.2	ZC3HC1	rs11556924-C	0.7	4E-8		1.07	[1.05-1.1]	Affymetrix, Illumina [8600000] (imputed)	N
1574	chr7	129663495	129663496	rs11556924	26343387	Nikpay M	2015-09-07	Nat Genet	A comprehensive 1,000 Genomes-based genome-wide association meta-analysis of coronary artery disease.	Coronary artery disease	42,096 European ancestry cases, 361 African American cases, 758 Hispanic American cases, 12,658 South Asian ancestry cases, 1,802 Lebanese ancestry cases, 3,614 East Asian ancestry cases, 99,121 European ancestry controls, 2,778 African American controls, 3,337 Hispanic American controls, 12,899 South Asian ancestry controls, 466 Lebanese ancestry controls, 7,709 East Asian ancestry controls	NA	7q32.2	ZC3HC1	rs11556924-C	0.686675	5E-11		1.08	[1.05- 1.10]	Affymetrix, Illumina [8600000] (imputed)	N
1574	chr7	129663495	129663496	rs11556924	24262325	Dichgans M	2013-11-21	Stroke	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Coronary artery disease or large artery stroke	2,167 Large artery stroke cases, 22,233 Coronary artery disease cases, ~ 75,921 controls	NA	7q32.2	ZC3HC1	rs11556924-?		8E-10				Affymetrix, Illumina [up to 2500000] (imputed)	N
1574	chr7	129663495	129663496	rs11556924	24262325	Dichgans M	2013-11-21	Stroke	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Coronary artery disease or ischemic stroke	12,389 Ischemic stroke cases, 22,233 Coronary artery disease cases, ~ 88,766 controls	NA	7q32.2	ZC3HC1	rs11556924-?		9E-10				Affymetrix, Illumina [up to 2500000] (imputed)	N
1574	chr7	129663495	129663496	rs11556924	24262325	Dichgans M	2013-11-21	Stroke	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Coronary artery disease	33,398 cases, 75,726 controls	NA	7q32.2	ZC3HC1	rs11556924-?	NR	3E-10		1.0989	[1.06-1.12]	Illumina [575000] (imputed)	N
1574	chr7	129663495	129663496	rs11556924	21378990	Schunkert H	2011-03-06	Nat Genet	Large-scale association analysis identifies 13 new susceptibility loci for coronary artery disease.	Coronary heart disease	22,233 European ancestry cases, 64,762 European ancestry controls	56,682 European ancestry cases and controls	7q32.2	ZC3HC1	rs11556924-C	0.62	9E-18		1.09	[1.07-1.12]	Affymetrix, Illumina [~ 2300000] (imputed)	N
1574	chr7	129664311	129664312	rs1464890	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (father's age at death)	309,383 European ancestry individuals	NA	7q32.2	NR	rs1464890-A	NR	7E-7		0.01271	[0.0077-0.0177] unit decrease	Illumina [541614]	N
1574	chr7	129674512	129674512	rs554099078	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	150,266 East Asian ancestry individuals	NA	7q32.2		rs554099078-AT	3.0E-6	1E-9		5.04155	[3.43-6.66] unit decrease	Illumina [13478778] (imputed)	N
1574	chr7	129677405	129677406	rs186264056	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-13 levels	3,557 Finnish ancestry individuals	NA	7q32.2	NR	rs186264056-C		9E-6		0.7222	[0.4-1.04] SD units increase	NR [10700000] (imputed)	N
1574	chr7	129685596	129685597	rs56179563	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	7q32.2		rs56179563-G	0.612	2E-14				Affymetrix [10369434] (imputed)	N
1574	chr7	129685596	129685597	rs56179563	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	7q32.2	ZC3HC1	rs56179563-A	0.389087	2E-20		0.021665303	[0.017-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1574	chr7	129685596	129685597	rs56179563	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	7q32.2	ZC3HC1	rs56179563-A	0.389074	7E-26		0.024607923	[0.02-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1574	chr7	129685596	129685597	rs56179563	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	7q32.2	ZC3HC1	rs56179563-A	0.388647	1E-12		0.016300792	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1574	chr7	129685596	129685597	rs56179563	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q32.2	NR	rs56179563-A	0.384811	2E-33				Affymetrix, Illumina [24588908] (imputed)	N
1574	chr7	129685596	129685597	rs56179563	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	7q32.2	NR	rs56179563-A	0.387477	3E-36		0.024124	[0.02-0.028] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1574	chr7	129685596	129685597	rs56179563	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q32.2	NR	rs56179563-A	0.382296	1E-11				Affymetrix, Illumina [23114412] (imputed)	N
1574	chr7	129685596	129685597	rs56179563	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	7q32.2	NR	rs56179563-A	0.389076	4E-18		0.017858	[0.014-0.022] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
1574	chr7	129685596	129685597	rs56179563	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q32.2	NR	rs56179563-A	0.38447	4E-10				Affymetrix, Illumina [19905671] (imputed)	N
1574	chr7	129685596	129685597	rs56179563	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	7q32.2	NR	rs56179563-A	0.389066	6E-12		0.014617	[0.01-0.019] SD unit increase	Affymetrix, Illumina [50036608] (imputed)	N
1574	chr7	129685596	129685597	rs56179563	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	7q32.2		rs56179563-?	NR	6E-14				NR [~ 8900000] (imputed)	N
1574	chr7	129698761	129698762	rs13245505	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	7q32.2	KIAA0265	rs13245505-?	NR	4E-6	(PC 32:0)	0.20109661	[0.12-0.29] unit increase	Affymetrix [at least 2500000] (imputed)	N
1574	chr7	129733361	129733362	rs6978929	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	7q32.2		rs6978929-?	NR	9E-10				NR [~ 8900000] (imputed)	N
1575	chr7	129782376	129782377	rs4731662	26821981	Koga AT	2016-01-28	J Neural Transm (Vienna)	Genome-wide association analysis to predict optimal antipsychotic dosage in schizophrenia: a pilot study.	antipsychotic drug dosage in schizophrenia or schizoaffective disorder	up to 39 European ancestry schizophrenia cases, up to 40 European ancestry schizoaffective cases	NA	7q32.2	NR	rs4731662-T	NR	5E-6	(CPZe)	0.2149	[NR] unit increase	Illumina [1190033]	N
1575	chr7	129870874	129870875	rs112255027	31320639	Hillary RF	2019-07-18	Nat Commun	Genome and epigenome wide studies of neurological protein biomarkers in the Lothian Birth Cohort 1936.	Neurological blood protein biomarker levels	750 European ancestry individuals	NA	7q32.2	SSMEM1	rs112255027-T	0.2259	9E-15	(CPA2)	0.51512	[0.38-0.65] unit increase	Illumina [8683751] (imputed)	N
1576	chr7	129908847	129908848	rs199695765	27114598	Liu C	2016-04-25	J Clin Oncol	Clinical and Genetic Risk Factors for Acute Pancreatitis in Patients With Acute Lymphoblastic Leukemia.	Asparaginase-induced acute pancreatitis in acute lymphoblastic leukemia (onset time)	46 European ancestry cases with pancreatitis, 3,023 European ancestry cases without pancreatitis, 11 Black cases with pancreatitis, 339 Black cases without pancreatitis, 46 Hispanic cases with pancreatitis, 1,131 Hispanic cases without pancreatitis, 1 Asian ancestry case with pancreatitis, 98 Asian ancestry cases without pancreatitis, 13 cases with with pancreatitis, 477 cases without pancreatitis	NA	7q32.2	CPA2	rs199695765-T	0.0	2E-8		6.6		Affymetrix [at least 751455]	N
1576	chr7	129931401	129931402	rs901799	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip	15 Asian ancestry cases, 13 European ancestry cases, 15 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	7q32.2	NR	rs901799-?	NR	3E-6		4.25	[2.98-6.06]	Illumina [539000] (imputed)	N
1576	chr7	129932364	129932365	rs4731674	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	7q32.2	NR	rs4731674-T	0.47	9E-311	(Carboxypeptidase A4, CPA4.9267.2.3)	0.83	[0.79-0.87] unit increase	Affymetrix [10572788] (imputed)	N
1576	chr7	129938597	129938598	rs34587586	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	7q32.2	CPA4	rs34587586-T	0.393	4E-1248	(Carboxypeptidase A4, CPA4.9267.2.3)	1.17	[1.13-1.21] unit decrease	Affymetrix [10572788] (imputed)	N
1576	chr7	129947453	129947454	rs7787960	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	7q32.2	CPA4	rs7787960-A	NR	3E-11		0.0196717	[0.014-0.025] unit increase	Affymetrix [321788] (imputed)	N
1576	chr7	129951107	129951108	rs729167	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	7q32.2	CPA4	rs729167-C	0.7490625	4E-332	(CPA4, 9267_2_3)	0.9936119	[0.95-1.04] unit increase	Illumina [> 1000000] (imputed)	N
1576	chr7	129962413	129962414	rs2306848	30891314	Saad MN	2019-01-18	J Adv Res	Studying the effects of haplotype partitioning methods on the RA-associated genomic results from the North American Rheumatoid Arthritis Consortium (NARAC) dataset.	Rheumatoid arthritis	868 European ancestry cases, 1,194 European ancestry controls	NA	7q32.2	CPA4	rs2306848-G	0.948	6E-12				NR [509413]	N
1576	chr7	129979362	129979363	rs7797371	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	7q32.2	snoU13	rs7797371-C	NR	2E-9		0.0189006	[0.013-0.025] unit increase	Affymetrix [321169] (imputed)	N
1576	chr7	129983499	129983500	rs6467304	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	7q32.2	snoU13	rs6467304-A	NR	2E-8		0.018267	[0.012-0.025] unit increase	Affymetrix [321114] (imputed)	N
1576	chr7	129988688	129988689	rs1009905	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	7q32.2	CPA5	rs1009905-A	NR	6E-11		0.0191854	[0.013-0.025] unit increase	Affymetrix [321788] (imputed)	N
1576	chr7	129989449	129989450	rs113766063	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	7q32.2		rs113766063-?	NR	6E-9				NR [~ 8900000] (imputed)	N
1576	chr7	129989589	129989590	rs528368897	31358989	Gelernter J	2019-07-29	Nat Neurosci	Genome-wide association study of post-traumatic stress disorder reexperiencing symptoms in >165,000 US veterans.	Post-traumatic stress disorder (re-experiencing symptoms)	146,660 European ancestry individuals, 19,983 African American individuals	117,900 European ancestry individuals	7q32.2	NR	rs528368897-?	NR	8E-6	(AA)	0.258617	[NR] unit increase	Affymetrix [49134253] (imputed)	N
1576	chr7	129997995	129997996	rs7803537	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	7q32.2	CPA5	rs7803537-A	NR	1E-10		0.0191747	[0.013-0.025] unit increase	Affymetrix [321016] (imputed)	N
1576	chr7	130004176	130004177	rs150490992	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	7q32.2	CPA5	rs150490992-T	NR	3E-8		0.0228169	[0.015-0.031] unit decrease	Affymetrix [321788] (imputed)	N
1576	chr7	130004190	130004191	rs12530709	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	7q32.2	NR	rs12530709-?	NR	1E-10				Affymetrix [~ 8270000] (imputed)	N
1576	chr7	130007597	130007598	rs748812	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	7q32.2	CPA5	rs748812-A	NR	8E-12		0.0195738	[0.014-0.025] unit increase	Affymetrix [321114] (imputed)	N
1576	chr7	130007597	130007598	rs748812	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	7q32.2	CPA5	rs748812-A	NR	2E-16		0.0242145	[0.018-0.03] unit increase	Affymetrix [321788] (imputed)	N
1576	chr7	130007597	130007598	rs748812	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	7q32.2	CPA5	rs748812-A	NR	5E-13		0.0204687	[0.015-0.026] unit increase	Affymetrix [321016] (imputed)	N
1576	chr7	130007597	130007598	rs748812	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	7q32.2	CPA5	rs748812-A	NR	4E-13		0.0208378	[0.015-0.026] unit increase	Affymetrix [321169] (imputed)	N
1576	chr7	130009310	130009311	rs10253113	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	7q32.2	CPA5	rs10253113-A	0.6919	6E-7		0.0372	[0.023-0.052] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1576	chr7	130009352	130009353	rs17164872	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	7q32.2	CPA5	rs17164872-T	NR	3E-14		0.0235305	[0.017-0.03] unit increase	Affymetrix [321788] (imputed)	N
1576	chr7	130011490	130011491	rs6975516	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	7q32.2	CPA5	rs6975516-T	NR	6E-9		0.0180302	[0.012-0.024] unit decrease	Affymetrix [321114] (imputed)	N
1576	chr7	130011490	130011491	rs6975516	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	7q32.2	CPA5	rs6975516-T	NR	8E-10		0.0190759	[0.013-0.025] unit decrease	Affymetrix [321169] (imputed)	N
1576	chr7	130013637	130013638	rs1465370	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	7q32.2	CPA5	rs1465370-G	0.6767000000000001	3E-8	(EA, women)	0.0318	[0.02-0.043] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1576	chr7	130013637	130013638	rs1465370	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	7q32.2	CPA5	rs1465370-G	0.6777	1E-6	(EA,women)	0.0312	[0.019-0.044] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1576	chr7	130013637	130013638	rs1465370	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	7q32.2	CPA5	rs1465370-?	0.6767000000000001	1E-7	(EA, women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1576	chr7	130016469	130016470	rs62471721	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	7q32.2	CPA1	rs62471721-A	NR	2E-19		0.0277152	[0.022-0.034] unit decrease	Affymetrix [321788] (imputed)	N
1576	chr7	130016469	130016470	rs62471721	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	7q32.2	CPA1	rs62471721-A	NR	5E-15		0.0231531	[0.017-0.029] unit decrease	Affymetrix [321016] (imputed)	N
1576	chr7	130017939	130017940	rs4731690	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	7q32.2	CPA1	rs4731690-A	NR	4E-17		0.0246663	[0.019-0.03] unit increase	Affymetrix [321788] (imputed)	N
1576	chr7	130021487	130021488	rs1126899	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	7q32.2	CPA1	rs1126899-G	NR	4E-13		0.0204586	[0.015-0.026] unit increase	Affymetrix [321016] (imputed)	N
1577	chr7	130024009	130024010	rs741486	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	7q32.2	CPA1	rs741486-G	NR	3E-13		0.0220963	[0.016-0.028] unit decrease	Affymetrix [321114] (imputed)	N
1577	chr7	130024009	130024010	rs741486	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	7q32.2	CPA1	rs741486-G	NR	4E-14		0.0229763	[0.017-0.029] unit decrease	Affymetrix [321169] (imputed)	N
1577	chr7	130024116	130024117	rs741487	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	7q32.2	CPA1	rs741487-G	NR	1E-9		0.0174159	[0.012-0.023] unit decrease	Affymetrix [321114] (imputed)	N
1577	chr7	130024116	130024117	rs741487	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	7q32.2	CPA1	rs741487-G	NR	1E-10		0.0184614	[0.013-0.024] unit decrease	Affymetrix [321169] (imputed)	N
1577	chr7	130025712	130025713	rs77792157	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	7q32.2		rs77792157-A	0.057536601	3E-11		0.13561141	[0.096-0.176] unit decrease	Illumina [13429769] (imputed)	N
1577	chr7	130025712	130025713	rs77792157	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	7q32.2		rs77792157-A	0.056118589	6E-9		0.12730636	[0.084-0.17] unit decrease	Illumina [13134967] (imputed)	N
1577	chr7	130025712	130025713	rs77792157	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	46,511 Asian ancestry cases, 169,776 Asian ancestry controls	NA	7q32.2	NR	rs77792157-G	0.9532	4E-9		0.1354	[0.09-0.18] unit increase	Affymetrix, Illumina [1077427] (imputed)	N
1577	chr7	130025712	130025713	rs77792157	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	7q32.2		rs77792157-A	0.049109653	5E-12		0.8693601	[0.835455198-0.904640896]	Illumina [8919992] (imputed)	N
1577	chr7	130025712	130025713	rs77792157	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	7q32.2	KLF14	rs77792157-G	0.95	3E-9		1.15	1.10-1.20	Illumina [12557761] (imputed)	N
1577	chr7	130025894	130025895	rs2239606	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	7q32.2	CPA1	rs2239606-G	NR	4E-8		0.0172089	[0.011-0.023] unit decrease	Affymetrix [323858] (imputed)	N
1577	chr7	130025894	130025895	rs2239606	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	7q32.2	CPA1	rs2239606-G	NR	3E-8		0.017422	[0.011-0.024] unit decrease	Affymetrix [127266] (imputed)	N
1577	chr7	130027036	130027037	rs2268382	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	7q32.2	CPA1	rs2268382-C	NR	3E-8		0.0183754	[0.012-0.025] unit decrease	Affymetrix [323858] (imputed)	N
1577	chr7	130027036	130027037	rs2268382	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	7q32.2	CPA1	rs2268382-C	NR	2E-8		0.0187022	[0.012-0.025] unit decrease	Affymetrix [127266] (imputed)	N
1577	chr7	130027036	130027037	rs2268382	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	7q32.2	NR	rs2268382-?	NR	2E-14				Affymetrix [~ 8270000] (imputed)	N
1577	chr7	130027036	130027037	rs2268382	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	7q32.2		rs2268382-?	NR	8E-10				NR [~ 8900000] (imputed)	N
1577	chr7	130027036	130027037	rs2268382	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	7q32.2		rs2268382-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1577	chr7	130027036	130027037	rs2268382	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	7q32.2	KLF14	rs2268382-C	0.3271	7E-6		1.03	[1.02-1.04]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1577	chr7	130027036	130027037	rs2268382	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	315,284 European ancestry male individuals	NA	7q32.2	NR	rs2268382-A	0.6611	3E-8		0.0105	[0.0068-0.0142] unit increase	NR [~ 27400000] (imputed)	N
1577	chr7	130029506	130029507	rs1558918	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	7q32.2	CPA1	rs1558918-A	NR	1E-11		0.0205995	[0.015-0.027] unit increase	Affymetrix [321114] (imputed)	N
1577	chr7	130029506	130029507	rs1558918	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	7q32.2	CPA1	rs1558918-A	NR	3E-13		0.0221205	[0.016-0.028] unit increase	Affymetrix [321169] (imputed)	N
1577	chr7	130034436	130034437	rs4728195	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	7q32.2	CEP41	rs4728195-G	NR	1E-13		0.0231134	[0.017-0.029] unit decrease	Affymetrix [321788] (imputed)	N
1577	chr7	130034436	130034437	rs4728195	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	7q32.2	CEP41	rs4728195-G	NR	7E-11		0.0195919	[0.014-0.025] unit decrease	Affymetrix [321016] (imputed)	N
1577	chr7	130034694	130034695	rs7793239	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	7q32.2	CEP41	rs7793239-C	NR	6E-15		0.0280022	[0.021-0.035] unit decrease	Affymetrix [321788] (imputed)	N
1577	chr7	130034694	130034695	rs7793239	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	7q32.2	CEP41	rs7793239-C	NR	3E-12		0.0240666	[0.017-0.031] unit decrease	Affymetrix [321016] (imputed)	N
1577	chr7	130034694	130034695	rs7793239	29064910	Kure Fischer E	2017-10-23	Int Clin Psychopharmacol	A molecular pathway analysis informs the genetic risk for arrhythmias during antipsychotic treatment.	Antipsychotic drug-induced QTc interval change in schizophrenia	434 European ancestry individuals, 202 African ancestry individuals, 25 individuals	NA	7q32.2	CEP41	rs7793239-C	NR	9E-7		1960.0	unit increase	Affymetrix, Perlegen [1785543] (imputed)	N
1577	chr7	130043564	130043565	rs73152871	32438682	Mateos MK	2020-05-19	Cancers (Basel)	Genome-Wide Association Meta-Analysis of Single-Nucleotide Polymorphisms and Symptomatic Venous Thromboembolism during Therapy for Acute Lymphoblastic Leukemia and Lymphoma in Caucasian Children.	Childhood ALL/LBL (acute lymphoblastic leukemia/lymphoblastic lymphoma) treatment-related venous thromboembolism	92 European ancestry cases, 1,481 European ancestry controls	NA	7q32.2	CEP41	rs73152871-?		2E-6		14.285714	[4.76-50]	Illumina [NR] (imputed)	N
1577	chr7	130048647	130048647	rs200356336	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	7q32.2	CEP41	rs200356336-GA	NR	5E-11		0.0574314	[0.04-0.075] unit decrease	Affymetrix [321788] (imputed)	N
1577	chr7	130048647	130048647	rs200356336	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	7q32.2	CEP41	rs200356336-GA	NR	1E-8		0.0478207	[0.031-0.064] unit decrease	Affymetrix [321016] (imputed)	N
1577	chr7	130049969	130049970	rs13223079	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	7q32.2	CEP41	rs13223079-A	NR	3E-9		0.0173384	[0.012-0.023] unit increase	Affymetrix [321788] (imputed)	N
1577	chr7	130118001	130118002	rs12672192	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	7q32.2	RP11-2E11.5	rs12672192-A	NR	1E-10		0.0194929	[0.014-0.025] unit decrease	Affymetrix [321114] (imputed)	N
1577	chr7	130118001	130118002	rs12672192	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	7q32.2	RP11-2E11.5	rs12672192-A	NR	2E-10		0.0193977	[0.013-0.025] unit decrease	Affymetrix [321169] (imputed)	N
1579	chr7	130369643	130369644	rs4731699	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	7q32.2	NR	rs4731699-?	NR	7E-12				Affymetrix [~ 8270000] (imputed)	N
1579	chr7	130386359	130386360	rs6942396	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	7q32.2	TSGA13	rs6942396-A	0.291	9E-6		0.0333	[0.019-0.048] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1579	chr7	130396768	130396769	rs74446409	26265699	Karol SE	2015-08-11	Blood	Genetics of glucocorticoid-associated osteonecrosis in children with acute lymphoblastic leukemia.	Glucocorticoid-induced osteonecrosis (age 10 years and older)	230 osteonecrosis cases, 1,238 treated controls	NA	7q32.2	KLF14	rs74446409-?	NR	4E-6				Affymetrix, Illumina [NR] (imputed)	N
1579	chr7	130410653	130410654	rs62471570	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	7q32.2	KLF14	rs62471570-A	NR	3E-10		0.0197316	[0.014-0.026] unit decrease	Affymetrix [321114] (imputed)	N
1579	chr7	130410653	130410654	rs62471570	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	7q32.2	KLF14	rs62471570-A	NR	1E-9		0.0190901	[0.013-0.025] unit decrease	Affymetrix [321169] (imputed)	N
1579	chr7	130416393	130416394	rs290794	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation Hannum age acceleration	34,449 European ancestry individuals, 6,148 African American individuals	NA	7q32.2	NR	rs290794-?	NR	4E-13				Affymetrix, Illumina [6210504] (imputed)	N
1580	chr7	130416725	130416726	rs290793	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	7q32.2	KLF14	rs290793-C	NR	2E-9		0.0225815	[0.015-0.03] unit decrease	Affymetrix [321788] (imputed)	N
1580	chr7	130417813	130417814	rs3909553	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	7q32.2	NR	rs3909553-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
1580	chr7	130417813	130417814	rs3909553	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	7q32.2		rs3909553-?	NR	6E-10				NR [~ 8900000] (imputed)	N
1580	chr7	130418743	130418744	rs111731678	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation Hannum age acceleration	34,449 European ancestry individuals	NA	7q32.2	NR	rs111731678-A	0.1939	1E-8		0.2266	[0.15-0.3] unit decrease	Affymetrix, Illumina [7565493] (imputed)	N
1580	chr7	130420739	130420740	rs35775580	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		7q32.2	KLF14	rs35775580-A	0.953004	3E-8		0.0180149	[0.012-0.024] unit increase	Affymetrix [12370749]	N
1580	chr7	130420739	130420740	rs35775580	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	7q32.2		rs35775580-?	NR	1E-12				NR [~ 8900000] (imputed)	N
1580	chr7	130420739	130420740	rs35775580	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7q32.2		rs35775580-?	NR	7E-9				NR [~ 8900000] (imputed)	N
1580	chr7	130422933	130422934	rs12154627	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	7q32.2	KLF14	rs12154627-C	0.496183	1E-10		0.014541424	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
1580	chr7	130422933	130422934	rs12154627	30670697	Kilpelainen TO	2019-01-22	Nat Commun	Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity.	HDL cholesterol x physical activity interaction (2df test)	7,395 African American inactive individuals, 13,092 African American active individuals, 2,753 Asian ancestry inactive individuals, 3,650 Asian ancestry active individuals, 22,963 European ancestry inactive individuals, 61,939 European ancestry active individuals, 2,829 Hispanic or Latin American inactive individuals, 6,358 Hispanic or Latin American active individuals	1,886 African American inactive individuals, 1,892 African American active individuals, 1,217 South African Black ancestry inactive individuals, 389 South African Black ancestry active individuals, 2,494 East Asian ancestry inactive individuals, 1,947 East Asian ancestry active individuals,  724 South Asian ancestry inactive individuals, 1,425 South Asian ancestry active individuals, 41,042 European ancestry inactive individuals, 66,575 European ancestry active individuals, 2,619 Hispanic inactive individuals, 8,802 Hispanic active individuals	7q32.2	NR	rs12154627-T	0.5636	3E-24				Affymetrix, Illumina [at least 2500000] (imputed)	N
1580	chr7	130422933	130422934	rs12154627	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	7q32.2		rs12154627-?	NR	4E-13				NR [~ 8900000] (imputed)	N
1580	chr7	130424211	130424212	rs6974288	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	7q32.2		rs6974288-?	NR	3E-12				NR [~ 8900000] (imputed)	N
1580	chr7	130424645	130424646	rs11762784	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x long total sleep time interaction (2df test)	2,933 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, up to 7,870 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,975 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 32,171 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 616 East Asian ancestry long sleepers, up to 9,486 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 929 African American controls, 2,517 East Asian ancestry controls, up to 38,126 European ancestry controls, 10,063 Hispanic controls	7q32.2	KLF14	rs11762784-?	NR	1E-16		0.007549	[0.0056-0.0095] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1580	chr7	130424645	130424646	rs11762784	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	7q32.2	KLF14, MIR29A	rs11762784-A	NR	6E-25				Affymetrix, Illumina [NR] (imputed)	N
1580	chr7	130424645	130424646	rs11762784	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	7q32.2	KLF14, MIR29A	rs11762784-A	NR	2E-17	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1580	chr7	130424645	130424646	rs11762784	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	7q32.2	KLF14, MIR29A	rs11762784-A	NR	1E-6	(Hispanic)			Affymetrix, Illumina [NR] (imputed)	N
1580	chr7	130424645	130424646	rs11762784	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	7q32.2	KLF14, MIR29A	rs11762784-A	NR	4E-23				Affymetrix, Illumina [NR] (imputed)	N
1580	chr7	130424645	130424646	rs11762784	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	7q32.2	KLF14, MIR29A	rs11762784-A	NR	2E-6	(Hispanic)			Affymetrix, Illumina [NR] (imputed)	N
1580	chr7	130424645	130424646	rs11762784	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	7q32.2	KLF14, MIR29A	rs11762784-A	NR	1E-15	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1580	chr7	130424645	130424646	rs11762784	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	7q32.2	KLF14, MIR29A	rs11762784-A	NR	8E-15	(EA)	0.02	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1580	chr7	130424645	130424646	rs11762784	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	7q32.2	KLF14, MIR29A	rs11762784-A	NR	6E-24		0.018	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1580	chr7	130424645	130424646	rs11762784	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	7q32.2	KLF14, MIR29A	rs11762784-A	NR	3E-6	(Asian)	0.014	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1580	chr7	130424645	130424646	rs11762784	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	7q32.2	KLF14, MIR29A	rs11762784-A	NR	1E-6	(Hispanic)	0.032	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1580	chr7	130424645	130424646	rs11762784	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	7q32.2	KLF14, MIR29A	rs11762784-A	NR	9E-6	(Asian)	0.015	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1580	chr7	130424645	130424646	rs11762784	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	7q32.2	KLF14, MIR29A	rs11762784-A	NR	4E-16		0.018	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1580	chr7	130424645	130424646	rs11762784	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	7q32.2	KLF14, MIR29A	rs11762784-A	NR	1E-8	(EA)	0.02	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1580	chr7	130424645	130424646	rs11762784	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	7q32.2	KLF14, MIR29A	rs11762784-A	NR	6E-32				Affymetrix, Illumina [NR] (imputed)	N
1580	chr7	130424645	130424646	rs11762784	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	7q32.2	KLF14, MIR29A	rs11762784-A	NR	3E-30	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1580	chr7	130424645	130424646	rs11762784	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	7q32.2	KLF14, MIR29A	rs11762784-A	NR	6E-37				Affymetrix, Illumina [NR] (imputed)	N
1580	chr7	130424645	130424646	rs11762784	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	7q32.2	KLF14, MIR29A	rs11762784-A	NR	1E-31	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1580	chr7	130424645	130424646	rs11762784	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	7q32.2	KLF14, MIR29A	rs11762784-A	NR	2E-22	(EA)	0.011	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1580	chr7	130424645	130424646	rs11762784	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	7q32.2	KLF14, MIR29A	rs11762784-A	NR	2E-22		0.008	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1580	chr7	130424645	130424646	rs11762784	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	7q32.2	KLF14, MIR29A	rs11762784-A	NR	7E-13	(EA)	0.01134	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1580	chr7	130424645	130424646	rs11762784	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	7q32.2	KLF14, MIR29A	rs11762784-A	NR	2E-14		0.008052	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1580	chr7	130425781	130425782	rs111968456	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	7q32.2	KLF14	rs111968456-A	0.001	4E-8		2.1205	[1.36-2.88] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1580	chr7	130427056	130427057	rs3996350	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	7q32.2	NR	rs3996350-G	0.5585	1E-18		0.0347	[0.027-0.042] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1580	chr7	130427387	130427388	rs10244142	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of apolipoprotein B to apolipoprotein A1 levels	115,082 European ancestry individuals	NA	7q32.2		rs10244142-C	0.685138	1E-8		0.0250667	[0.016-0.034] unit decrease	NR [11722792] (imputed)	N
1580	chr7	130429185	130429186	rs13234269	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls, 49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	7q32.2		rs13234269-A	NR	7E-11		0.0395	[0.028-0.051] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1580	chr7	130429185	130429186	rs13234269	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting insulin	151,013 European ancestry individuals	NA	7q32.2	KLF14	rs13234269-A	0.4793	1E-8		0.0108	[0.0071-0.0145] unit decrease	Affymetrix, Illumina [32635793] (imputed)	N
1580	chr7	130429185	130429186	rs13234269	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	High density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	7q32.2	KLF14, MIR29A	rs13234269-?		1E-8		0.0266	[0.017-0.036] unit decrease	Illumina [31500000] (imputed)	N
1580	chr7	130429185	130429186	rs13234269	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	7q32.2	LOC105375508, KLF14	rs13234269-A	0.492515171023194	7E-14		0.0583	[0.043-0.074] unit decrease	NR [5035015] (imputed)	N
1580	chr7	130430929	130430930	rs4731701	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	7q32.2		rs4731701-T	NR	1E-13		0.0484	[0.036-0.061] unit decrease	Affymetrix, Illumina [25845091] (imputed)	N
1580	chr7	130430929	130430930	rs4731701	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	7q32.2	KLF14	rs4731701-C	0.506912	3E-61		0.0328926	[0.029-0.037] unit increase	Affymetrix [NR] (imputed)	N
1580	chr7	130430929	130430930	rs4731701	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	7q32.2	KLF14	rs4731701-C	0.506998	1E-54		0.029758	[0.026-0.034] unit decrease	Affymetrix [NR] (imputed)	N
1580	chr7	130430968	130430969	rs10260148	31589552	Lind L	2019-10-07	Metab Syndr Relat Disord	Genome-Wide Association Study of the Metabolic Syndrome in UK Biobank.	Metabolic syndrome	291,107 European ancestry individuals	NA	7q32.2	KLF14	rs10260148-T	0.27901	7E-13		0.0521287	[0.038-0.066] unit increase	Affymetrix [9463307] (imputed)	N
1580	chr7	130430968	130430969	rs10260148	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	7q32.2		rs10260148-?	NR	1E-13				NR [~ 8900000] (imputed)	N
1580	chr7	130430968	130430969	rs10260148	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Type 2 diabetes	approximately 459,000 European ancestry individuals	NA	7q32.2		rs10260148-?	NR	6E-9				NR [~ 8900000] (imputed)	N
1580	chr7	130432468	130432469	rs34072724	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	7q32.2		rs34072724-G	0.508211	2E-9		0.0237729	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
1580	chr7	130432468	130432469	rs34072724	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	7q32.2		rs34072724-A	NR	4E-9		0.0466	[0.031-0.062] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1580	chr7	130432468	130432469	rs34072724	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	7q32.2	KLF14	rs34072724-A	0.487	4E-19		0.2181	[0.17-0.27] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1580	chr7	130432480	130432481	rs6971365	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	7q32.2		rs6971365-T	0.707174	4E-13		0.0314939	[0.023-0.04] unit decrease	NR [11722792] (imputed)	N
1580	chr7	130432480	130432481	rs6971365	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very small VLDL	115,082 European ancestry individuals	NA	7q32.2		rs6971365-T	0.707174	4E-10		0.0276402	[0.019-0.036] unit decrease	NR [11722792] (imputed)	N
1580	chr7	130432480	130432481	rs6971365	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	7q32.2		rs6971365-T	0.707174	4E-11		0.0289282	[0.02-0.038] unit decrease	NR [11722792] (imputed)	N
1580	chr7	130432480	130432481	rs6971365	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	7q32.2		rs6971365-T	0.707174	6E-11		0.0285762	[0.02-0.037] unit decrease	NR [11722792] (imputed)	N
1580	chr7	130432480	130432481	rs6971365	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	7q32.2		rs6971365-T	0.707174	3E-12		0.0304121	[0.022-0.039] unit decrease	NR [11722792] (imputed)	N
1580	chr7	130432480	130432481	rs6971365	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	7q32.2		rs6971365-T	0.707174	1E-10		0.0278279	[0.019-0.036] unit increase	NR [11722792] (imputed)	N
1580	chr7	130432480	130432481	rs6971365	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	7q32.2		rs6971365-T	0.707174	9E-11		0.0282933	[0.02-0.037] unit decrease	NR [11722792] (imputed)	N
1580	chr7	130432480	130432481	rs6971365	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of chylomicrons and extremely large VLDL particles	115,082 European ancestry individuals	NA	7q32.2		rs6971365-T	0.707174	8E-12		0.0298356	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
1580	chr7	130432480	130432481	rs6971365	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	7q32.2		rs6971365-T	0.707174	1E-12		0.0311932	[0.023-0.04] unit increase	NR [11722792] (imputed)	N
1580	chr7	130432480	130432481	rs6971365	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	7q32.2		rs6971365-T	0.707174	8E-11		0.0285215	[0.02-0.037] unit decrease	NR [11722792] (imputed)	N
1580	chr7	130432480	130432481	rs6971365	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	7q32.2		rs6971365-T	0.707174	3E-14		0.0327187	[0.024-0.041] unit increase	NR [11722792] (imputed)	N
1580	chr7	130432480	130432481	rs6971365	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	7q32.2		rs6971365-T	0.707174	7E-11		0.0284729	[0.02-0.037] unit decrease	NR [11722792] (imputed)	N
1580	chr7	130432480	130432481	rs6971365	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	7q32.2	intergenic	rs6971365-T	0.7147	2E-18		0.0262	[0.02-0.032] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1580	chr7	130432480	130432481	rs6971365	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex x age interaction (4df test)	up to 43,776 European ancestry men aged <50, up to 50,526 European ancestry women aged <50, up to 69,944 European ancestry men aged >50, up to 88,129 European ancestry women aged >50	NA	7q32.2	KLF14, CPA4, CEP41, CPA5, MEST, CPA1, MESTIT1, MIR335, COPG2, TSGA13, MIR29A, MIR29B1, LOC646329, FLJ43663, MKLN1	rs6971365-C	0.29999	6E-7				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1580	chr7	130432480	130432481	rs6971365	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex interaction	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	7q32.2	KLF14	rs6971365-C	0.3	3E-6				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1580	chr7	130432480	130432481	rs6971365	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI (age >50)	up to 69,944 European ancestry men, up to 88,129 European ancestry women	NA	7q32.2	KLF14, CPA4, CEP41, CPA5, MEST, CPA1, MESTIT1, MIR335, COPG2, TSGA13, MIR29A, MIR29B1, LOC646329, FLJ43663, MKLN1	rs6971365-C	0.29999	1E-7	(women)	0.0332	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1580	chr7	130432480	130432481	rs6971365	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	7q32.2	KLF14	rs6971365-C	0.3	3E-8	(women)	0.027	units increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1580	chr7	130432537	130432538	rs13241165	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	7q32.2		rs13241165-A	0.508223	2E-9		0.0235751	[0.016-0.031] unit decrease	NR [11722792] (imputed)	N
1580	chr7	130432537	130432538	rs13241165	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	7q32.2	NR	rs13241165-?	NR	1E-9		0.02579994	[0.018-0.034] unit decrease	Illumina [31978265] (imputed)	N
1580	chr7	130432537	130432538	rs13241165	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	7q32.2	NR	rs13241165-?	NR	6E-9		0.6779438	[0.45-0.91] unit increase	Illumina [31978362] (imputed)	N
1580	chr7	130432537	130432538	rs13241165	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7q32.2	NR	rs13241165-A	NR	2E-14		0.029	unit increase	Affymetrix [at least 7091467] (imputed)	N
1580	chr7	130432537	130432538	rs13241165	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7q32.2	NR	rs13241165-A	0.518	3E-13	(EA)	0.03	unit increase	Affymetrix [at least 7091467] (imputed)	N
1580	chr7	130432537	130432538	rs13241165	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7q32.2	NR	rs13241165-A	NR	2E-21		0.033	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1580	chr7	130432537	130432538	rs13241165	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7q32.2	NR	rs13241165-A	0.572	2E-6	(Hispanic)	0.059	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1580	chr7	130432537	130432538	rs13241165	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7q32.2	NR	rs13241165-A	0.518	6E-17	(EA)	0.031	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1580	chr7	130432537	130432538	rs13241165	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	HDL cholesterol	up to 62,166 European ancestry individuals	NA	7q32.2	KLF14	rs13241165-T	0.51	8E-10		0.037	[0.025-0.049] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
1580	chr7	130432913	130432913	rs553015785	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for LDL particles	115,082 European ancestry individuals	NA	7q32.2		rs553015785-A	0.512119	5E-8		0.0219837	[0.014-0.03] unit decrease	NR [11722792] (imputed)	N
1580	chr7	130432915	130432916	rs13241634	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	7q32.2		rs13241634-A	0.580378	4E-9		0.0246933	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
1580	chr7	130432915	130432916	rs13241634	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	7q32.2		rs13241634-A	0.580378	2E-8		0.0234109	[0.015-0.032] unit increase	NR [11722792] (imputed)	N
1580	chr7	130432915	130432916	rs13241634	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	7q32.2		rs13241634-A	0.580378	3E-8		0.0237229	[0.015-0.032] unit increase	NR [11722792] (imputed)	N
1580	chr7	130432915	130432916	rs13241634	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	7q32.2		rs13241634-A	0.580378	7E-9		0.0245589	[0.016-0.033] unit decrease	NR [11722792] (imputed)	N
1580	chr7	130432915	130432916	rs13241634	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	7q32.2		rs13241634-A	0.580378	6E-9		0.0246426	[0.016-0.033] unit decrease	NR [11722792] (imputed)	N
1580	chr7	130432915	130432916	rs13241634	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	7q32.2		rs13241634-A	0.580378	2E-9		0.0249721	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
1580	chr7	130432915	130432916	rs13241634	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	7q32.2		rs13241634-A	0.580378	6E-10		0.0257462	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
1580	chr7	130432915	130432916	rs13241634	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	7q32.2		rs13241634-A	0.580378	1E-8		0.0240228	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
1580	chr7	130432915	130432916	rs13241634	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	7q32.2		rs13241634-A	0.580378	5E-9		0.024491	[0.016-0.033] unit decrease	NR [11722792] (imputed)	N
1580	chr7	130433383	130433384	rs4731702	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	7q32.2		rs4731702-T	NR	3E-47		0.0296	[0.026-0.034] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
1580	chr7	130433383	130433384	rs4731702	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	7q32.2	KLF14	rs4731702-T	NR	3E-79		0.0550063	[0.049-0.061] unit increase	Affymetrix [321788] (imputed)	N
1580	chr7	130433383	130433384	rs4731702	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	7q32.2	KLF14	rs4731702-T	NR	2E-56		0.0444956	[0.039-0.05] unit increase	Affymetrix [321016] (imputed)	N
1580	chr7	130433383	130433384	rs4731702	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body fat percentage and type 2 diabetes (pairwise)	200,863 European ancestry individuals, 24,401 East Asian, South Asian and African American ancestry individuals	NA	7q32.2	KLF14	rs4731702-T	0.4493	5E-9				Affymetrix, Illumina [2331072] (imputed)	N
1580	chr7	130433383	130433384	rs4731702	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body fat percentage and triglycerides (pairwise)	268,505 European ancestry individuals, 10,072 East Asian, South Asian and African American ancestry individuals	NA	7q32.2	KLF14	rs4731702-T	0.4493	4E-11				Affymetrix, Illumina [2331072] (imputed)	N
1580	chr7	130433383	130433384	rs4731702	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body fat percentage and HDL-C (pairwise)	277,811 European ancestry individuals, 10,022 East Asian, South Asian and African American ancestry individuals	NA	7q32.2	KLF14	rs4731702-T	0.4493	5E-20				Affymetrix, Illumina [2331072] (imputed)	N
1580	chr7	130433383	130433384	rs4731702	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	7q32.2		rs4731702-T	0.4936	5E-15		0.17339396	[0.13-0.22] mmHg decrease	Affymetrix, Illumina [242865] (imputed)	N
1580	chr7	130433383	130433384	rs4731702	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	7q32.2	NR	rs4731702-?	NR	1E-9		0.02578935	[0.018-0.034] unit decrease	Illumina [31978265] (imputed)	N
1580	chr7	130433383	130433384	rs4731702	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	7q32.2	NR	rs4731702-?	NR	7E-9		0.6755981	[0.45-0.9] unit increase	Illumina [31978362] (imputed)	N
1580	chr7	130433383	130433384	rs4731702	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	HDL cholesterol levels	up to 23,761 African ancestry individuals, 13,171 Asian ancestry individuals, up to 90,272 European ancestry individuals, 6,620 Hispanic individuals	NA	7q32.2		rs4731702-T	0.4367	1E-14		0.0085	[0.0063-0.0107] unit increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1580	chr7	130433383	130433384	rs4731702	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7q32.2	NR	rs4731702-C	NR	2E-14		0.029	unit increase	Affymetrix [at least 7091467] (imputed)	N
1580	chr7	130433383	130433384	rs4731702	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7q32.2	NR	rs4731702-C	0.518	2E-13	(EA)	0.03	unit increase	Affymetrix [at least 7091467] (imputed)	N
1580	chr7	130433383	130433384	rs4731702	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7q32.2	NR	rs4731702-C	NR	2E-21		0.033	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1580	chr7	130433383	130433384	rs4731702	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7q32.2	NR	rs4731702-C	0.573	2E-6	(Hispanic)	0.059	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1580	chr7	130433383	130433384	rs4731702	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7q32.2	NR	rs4731702-C	0.518	5E-17	(EA)	0.031	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1580	chr7	130433383	130433384	rs4731702	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	HDL cholesterol levels	34,930 East Asian ancestry individuals, 187,167 European ancestry individuals	8,741 Chinese ancestry individuals	7q32.2	KLF14	rs4731702-T	0.46	1E-17	(Trans-ethnic initial)	0.0294	[0.023-0.036] unit increase (EA Beta values)	Affymetrix, Illumina [~ 1900000] (imputed)	N
1580	chr7	130433383	130433384	rs4731702	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	7q32.2	KLF14	rs4731702-T	0.49	5E-17		0.029	[NR] unit increase	NR [NR] (imputed)	N
1580	chr7	130433383	130433384	rs4731702	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	HDL cholesterol	99,900 European ancestry individuals	NA	7q32.2	KLF14	rs4731702-T	0.48	1E-15		0.59	[0.45-0.73] mg/dL increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1580	chr7	130433593	130433594	rs11976955	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	7q32.2		rs11976955-C	0.685788	2E-13		0.0307519	[0.023-0.039] unit decrease	NR [11722792] (imputed)	N
1580	chr7	130433593	130433594	rs11976955	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	7q32.2		rs11976955-C	0.685789	1E-15		0.0338624	[0.026-0.042] unit decrease	NR [11722792] (imputed)	N
1580	chr7	130433593	130433594	rs11976955	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large VLDL	115,082 European ancestry individuals	NA	7q32.2		rs11976955-C	0.685789	1E-15		0.0339885	[0.026-0.042] unit decrease	NR [11722792] (imputed)	N
1580	chr7	130433593	130433594	rs11976955	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small VLDL	115,082 European ancestry individuals	NA	7q32.2		rs11976955-C	0.685789	4E-13		0.031257	[0.023-0.04] unit decrease	NR [11722792] (imputed)	N
1580	chr7	130433593	130433594	rs11976955	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small LDL	115,082 European ancestry individuals	NA	7q32.2		rs11976955-C	0.685789	9E-12		0.029475	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
1580	chr7	130433593	130433594	rs11976955	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small HDL	115,082 European ancestry individuals	NA	7q32.2		rs11976955-C	0.685789	3E-13		0.0314106	[0.023-0.04] unit decrease	NR [11722792] (imputed)	N
1580	chr7	130433593	130433594	rs11976955	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium VLDL	115,082 European ancestry individuals	NA	7q32.2		rs11976955-C	0.685789	8E-14		0.0322992	[0.024-0.041] unit decrease	NR [11722792] (imputed)	N
1580	chr7	130433593	130433594	rs11976955	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium LDL	115,082 European ancestry individuals	NA	7q32.2		rs11976955-C	0.685789	2E-10		0.0278138	[0.019-0.036] unit decrease	NR [11722792] (imputed)	N
1580	chr7	130433593	130433594	rs11976955	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large VLDL	115,082 European ancestry individuals	NA	7q32.2		rs11976955-C	0.685789	2E-15		0.0340113	[0.026-0.042] unit decrease	NR [11722792] (imputed)	N
1580	chr7	130433593	130433594	rs11976955	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large LDL	115,082 European ancestry individuals	NA	7q32.2		rs11976955-C	0.685789	2E-8		0.0246658	[0.016-0.033] unit decrease	NR [11722792] (imputed)	N
1580	chr7	130433593	130433594	rs11976955	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in VLDL	115,082 European ancestry individuals	NA	7q32.2		rs11976955-C	0.685789	2E-14		0.0327534	[0.024-0.041] unit decrease	NR [11722792] (imputed)	N
1580	chr7	130433593	130433594	rs11976955	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in LDL	115,082 European ancestry individuals	NA	7q32.2		rs11976955-C	0.685789	2E-9		0.0263676	[0.018-0.035] unit decrease	NR [11722792] (imputed)	N
1580	chr7	130433593	130433594	rs11976955	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total triglycerides levels	115,082 European ancestry individuals	NA	7q32.2		rs11976955-C	0.685789	2E-13		0.0317017	[0.023-0.04] unit decrease	NR [11722792] (imputed)	N
1580	chr7	130433593	130433594	rs11976955	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large VLDL	115,082 European ancestry individuals	NA	7q32.2		rs11976955-C	0.685789	2E-15		0.0341088	[0.026-0.043] unit decrease	NR [11722792] (imputed)	N
1580	chr7	130433593	130433594	rs11976955	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small VLDL	115,082 European ancestry individuals	NA	7q32.2		rs11976955-C	0.685789	4E-11		0.0290454	[0.02-0.038] unit decrease	NR [11722792] (imputed)	N
1580	chr7	130433593	130433594	rs11976955	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium VLDL	115,082 European ancestry individuals	NA	7q32.2		rs11976955-C	0.685789	1E-9		0.0269596	[0.018-0.036] unit decrease	NR [11722792] (imputed)	N
1580	chr7	130433593	130433594	rs11976955	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large VLDL	115,082 European ancestry individuals	NA	7q32.2		rs11976955-C	0.685789	2E-15		0.0341869	[0.026-0.043] unit decrease	NR [11722792] (imputed)	N
1580	chr7	130433593	130433594	rs11976955	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in VLDL	115,082 European ancestry individuals	NA	7q32.2		rs11976955-C	0.685789	6E-13		0.031397	[0.023-0.04] unit decrease	NR [11722792] (imputed)	N
1580	chr7	130433593	130433594	rs11976955	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	7q32.2		rs11976955-C	0.685829	2E-17		0.0352243	[0.027-0.043] unit decrease	NR [11722792] (imputed)	N
1580	chr7	130433593	130433594	rs11976955	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	7q32.2		rs11976955-C	0.685829	2E-9		0.0256733	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
1580	chr7	130433593	130433594	rs11976955	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large VLDL	115,082 European ancestry individuals	NA	7q32.2		rs11976955-C	0.685789	4E-15		0.0337861	[0.025-0.042] unit decrease	NR [11722792] (imputed)	N
1580	chr7	130433593	130433594	rs11976955	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large VLDL	115,082 European ancestry individuals	NA	7q32.2		rs11976955-C	0.685789	2E-15		0.0341616	[0.026-0.043] unit decrease	NR [11722792] (imputed)	N
1580	chr7	130433593	130433594	rs11976955	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in VLDL	115,082 European ancestry individuals	NA	7q32.2		rs11976955-C	0.685789	2E-11		0.0295928	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
1580	chr7	130433593	130433594	rs11976955	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	7q32.2		rs11976955-C	0.685789	2E-14		0.0330281	[0.025-0.041] unit decrease	NR [11722792] (imputed)	N
1580	chr7	130433593	130433594	rs11976955	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	7q32.2		rs11976955-C	0.685789	2E-15		0.0342256	[0.026-0.043] unit decrease	NR [11722792] (imputed)	N
1580	chr7	130433593	130433594	rs11976955	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in VLDL	115,082 European ancestry individuals	NA	7q32.2		rs11976955-C	0.685789	4E-10		0.0276597	[0.019-0.036] unit decrease	NR [11722792] (imputed)	N
1580	chr7	130433593	130433594	rs11976955	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large VLDL particles	115,082 European ancestry individuals	NA	7q32.2		rs11976955-C	0.685789	1E-15		0.0341952	[0.026-0.043] unit decrease	NR [11722792] (imputed)	N
1580	chr7	130433593	130433594	rs11976955	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small VLDL particles	115,082 European ancestry individuals	NA	7q32.2		rs11976955-C	0.685789	1E-11		0.0296492	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
1580	chr7	130433593	130433594	rs11976955	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large VLDL particles	115,082 European ancestry individuals	NA	7q32.2		rs11976955-C	0.685789	2E-15		0.0340556	[0.026-0.042] unit decrease	NR [11722792] (imputed)	N
1580	chr7	130433593	130433594	rs11976955	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of VLDL particles	115,082 European ancestry individuals	NA	7q32.2		rs11976955-C	0.685789	9E-10		0.027056	[0.018-0.036] unit decrease	NR [11722792] (imputed)	N
1580	chr7	130433593	130433594	rs11976955	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large VLDL	115,082 European ancestry individuals	NA	7q32.2		rs11976955-C	0.685789	3E-11		0.0292644	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
1580	chr7	130433593	130433594	rs11976955	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large VLDL	115,082 European ancestry individuals	NA	7q32.2		rs11976955-C	0.685789	3E-11		0.0291598	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
1580	chr7	130433593	130433594	rs11976955	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	7q32.2		rs11976955-C	0.685789	3E-13		0.0316476	[0.023-0.04] unit decrease	NR [11722792] (imputed)	N
1580	chr7	130433593	130433594	rs11976955	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	7q32.2		rs11976955-C	0.685789	2E-13		0.0321422	[0.024-0.041] unit decrease	NR [11722792] (imputed)	N
1580	chr7	130433593	130433594	rs11976955	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for VLDL particles	115,082 European ancestry individuals	NA	7q32.2		rs11976955-C	0.685789	7E-14		0.0311271	[0.023-0.039] unit decrease	NR [11722792] (imputed)	N
1580	chr7	130433943	130433944	rs6961342	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large HDL	115,082 European ancestry individuals	NA	7q32.2		rs6961342-C	0.719494	1E-13		0.0299392	[0.022-0.038] unit increase	NR [11722792] (imputed)	N
1580	chr7	130433943	130433944	rs6961342	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in HDL	115,082 European ancestry individuals	NA	7q32.2		rs6961342-C	0.719494	2E-8		0.0231892	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
1580	chr7	130433943	130433944	rs6961342	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium HDL particles	115,082 European ancestry individuals	NA	7q32.2		rs6961342-C	0.719494	2E-8		0.0237951	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
1580	chr7	130433943	130433944	rs6961342	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	7q32.2		rs6961342-C	0.719494	1E-10		0.0270989	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
1580	chr7	130433943	130433944	rs6961342	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	7q32.2		rs6961342-C	0.719494	1E-13		0.0301998	[0.022-0.038] unit increase	NR [11722792] (imputed)	N
1580	chr7	130433943	130433944	rs6961342	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	7q32.2	KLF14	rs6961342-A	NR	6E-35		0.0386554	[0.033-0.045] unit increase	Affymetrix [319769] (imputed)	N
1580	chr7	130433943	130433944	rs6961342	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	7q32.2	KLF14	rs6961342-A	NR	7E-59		0.0526415	[0.046-0.059] unit decrease	Affymetrix [321788] (imputed)	N
1580	chr7	130433943	130433944	rs6961342	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	7q32.2	NR	rs6961342-?	NR	7E-17				Affymetrix [~ 8270000] (imputed)	N
1580	chr7	130434499	130434500	rs35722851	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls, 33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	7q32.2		rs35722851-C	NR	1E-12		0.0349	[0.025-0.045] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1580	chr7	130435180	130435181	rs287621	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	7q32.2	KLF14	rs287621-T	NR	9E-36		0.0391218	[0.033-0.045] unit increase	Affymetrix [319769] (imputed)	N
1580	chr7	130435180	130435181	rs287621	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	7q32.2	NR	rs287621-C	NR	3E-33		0.0318	[0.027-0.037] unit decrease	Affymetrix [9000000] (imputed)	N
1580	chr7	130435180	130435181	rs287621	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	7q32.2	NR	rs287621-C	NR	3E-9		0.0165	[0.011-0.022] unit increase	Affymetrix [9000000] (imputed)	N
1580	chr7	130435180	130435181	rs287621	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	7q32.2	NR	rs287621-C	NR	9E-12		0.0181	[0.013-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
1580	chr7	130435180	130435181	rs287621	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	7q32.2	NR	rs287621-C	NR	3E-40		0.0367	[0.031-0.042] unit increase	Affymetrix [9000000] (imputed)	N
1580	chr7	130435180	130435181	rs287621	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	7q32.2	NR	rs287621-C	NR	2E-16		0.0218	[0.017-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
1580	chr7	130435180	130435181	rs287621	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	7q32.2	NR	rs287621-C	NR	1E-29		0.0314	[0.026-0.037] unit increase	Affymetrix [9000000] (imputed)	N
1580	chr7	130437123	130437124	rs13230111	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	7q32.2	KLF14	rs13230111-A	0.507651	6E-11		0.0136169	[0.0095-0.0177] unit increase	Affymetrix [NR] (imputed)	N
1580	chr7	130437123	130437124	rs13230111	31566214	Kulminski AM	2019-09-30	J Gerontol A Biol Sci Med Sci	Quantitative and qualitative role of antagonistic heterogeneity in genetics of blood lipids.	High density lipoprotein cholesterol levels	29,902 European ancestry individuals	NA	7q32.2		rs13230111-G	0.48	4E-8		0.67	[0.43-0.91] unit increase	Affymetrix, Illumina [up to 2500000] (imputed)	N
1580	chr7	130437475	130437476	rs7810507	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	7q32.2		rs7810507-G	0.718915	1E-14		0.0310732	[0.023-0.039] unit increase	NR [11722792] (imputed)	N
1580	chr7	130437475	130437476	rs7810507	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in HDL	115,082 European ancestry individuals	NA	7q32.2		rs7810507-G	0.718915	1E-9		0.02513	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
1580	chr7	130437475	130437476	rs7810507	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	7q32.2		rs7810507-G	0.718915	3E-13		0.0317058	[0.023-0.04] unit decrease	NR [11722792] (imputed)	N
1580	chr7	130437475	130437476	rs7810507	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	HDL cholesterol levels	115,082 European ancestry individuals	NA	7q32.2		rs7810507-G	0.718915	2E-13		0.0300341	[0.022-0.038] unit increase	NR [11722792] (imputed)	N
1580	chr7	130437475	130437476	rs7810507	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	7q32.2		rs7810507-G	0.718915	1E-8		0.0232778	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
1580	chr7	130437475	130437476	rs7810507	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	7q32.2		rs7810507-G	0.718915	4E-8		0.0230121	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
1580	chr7	130437475	130437476	rs7810507	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	7q32.2		rs7810507-G	0.718915	2E-13		0.0295052	[0.022-0.037] unit increase	NR [11722792] (imputed)	N
1580	chr7	130437475	130437476	rs7810507	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in HDL	115,082 European ancestry individuals	NA	7q32.2		rs7810507-G	0.718915	2E-9		0.024275	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
1580	chr7	130437475	130437476	rs7810507	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	7q32.2		rs7810507-G	0.718915	4E-15		0.0315308	[0.024-0.039] unit increase	NR [11722792] (imputed)	N
1580	chr7	130437475	130437476	rs7810507	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	7q32.2		rs7810507-G	0.718915	2E-12		0.030696	[0.022-0.039] unit increase	NR [11722792] (imputed)	N
1580	chr7	130437475	130437476	rs7810507	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	7q32.2		rs7810507-G	0.718915	2E-11		0.0277608	[0.02-0.036] unit increase	NR [11722792] (imputed)	N
1580	chr7	130437475	130437476	rs7810507	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium HDL	115,082 European ancestry individuals	NA	7q32.2		rs7810507-G	0.718915	4E-11		0.0280198	[0.02-0.036] unit increase	NR [11722792] (imputed)	N
1580	chr7	130437475	130437476	rs7810507	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	7q32.2		rs7810507-G	0.718915	3E-17		0.0342322	[0.026-0.042] unit increase	NR [11722792] (imputed)	N
1580	chr7	130437475	130437476	rs7810507	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	7q32.2		rs7810507-G	0.718915	2E-14		0.0314609	[0.023-0.04] unit increase	NR [11722792] (imputed)	N
1580	chr7	130437475	130437476	rs7810507	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	7q32.2		rs7810507-G	0.718915	3E-12		0.030153	[0.022-0.039] unit increase	NR [11722792] (imputed)	N
1580	chr7	130437475	130437476	rs7810507	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	7q32.2		rs7810507-G	0.718915	2E-16		0.033217	[0.025-0.041] unit increase	NR [11722792] (imputed)	N
1580	chr7	130437475	130437476	rs7810507	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein A1 levels	115,082 European ancestry individuals	NA	7q32.2		rs7810507-G	0.718915	4E-8		0.0229766	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
1580	chr7	130437475	130437476	rs7810507	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	7q32.2	KLF14	rs7810507-A	NR	2E-37		0.0400455	[0.034-0.046] unit decrease	Affymetrix [321016] (imputed)	N
1580	chr7	130438213	130438214	rs13234407	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	7q32.2	NR	rs13234407-A	NR	3E-9		0.0141	[0.0094-0.0188] unit decrease	Affymetrix [9000000] (imputed)	N
1580	chr7	130438213	130438214	rs13234407	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x short total sleep time interaction (2df test)	3,007 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,474 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, up to 11,901 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,567 European ancestry controls, 4,047 Hispanic/Latino controls	up to 221 African American short sleepers, 629 East Asian ancestry short sleepers, up to 9,585 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 2,504 East Asian ancestry controls, up to 38,027 European ancestry controls, 10,061 Hispanic controls	7q32.2	KLF14	rs13234407-?	NR	3E-17		0.007863	[0.006-0.0097] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1580	chr7	130438213	130438214	rs13234407	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	7q32.2	KLF14	rs13234407-A	0.4645	3E-9		0.1928	[0.13-0.26] mmHg decrease	Affymetrix [NR] (imputed)	N
1580	chr7	130438531	130438537	rs559324308	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	7q32.2		rs559324308-C	NR	8E-45		0.032	[0.027-0.037] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
1580	chr7	130439057	130439058	rs7783857	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	7q32.2	NR	rs7783857-C	0.7318	1E-16		0.0157	[0.012-0.019] unit decrease	NR [~ 27400000] (imputed)	N
1580	chr7	130439057	130439058	rs7783857	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	7q32.2	NR	rs7783857-C	0.7317	3E-7		0.0096	[0.0059-0.0133] unit decrease	NR [~ 27400000] (imputed)	N
1580	chr7	130439057	130439058	rs7783857	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	7q32.2	intergenic	rs7783857-C	0.7155	2E-6		0.0297	[0.018-0.042] unit decrease	NR [8041861] (imputed)	N
1580	chr7	130439861	130439862	rs13241538	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	7q32.2	KLF14	rs13241538-C	0.4784	4E-6	(EA, women)	0.0207	[0.012-0.03] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1580	chr7	130439861	130439862	rs13241538	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	7q32.2	KLF14	rs13241538-C	0.4714	9E-6	(women)	0.0195	[0.011-0.028] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1580	chr7	130439861	130439862	rs13241538	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	7q32.2	KLF14	rs13241538-C	0.478	2E-6	(EA)	0.0168	[0.0099-0.0237] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1580	chr7	130439861	130439862	rs13241538	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	7q32.2	KLF14	rs13241538-C	0.478	1E-13	(EA, women)	0.0334	[0.025-0.042] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1580	chr7	130442140	130442141	rs6467314	22885922	Morris AP	2012-09-01	Nat Genet	Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes.	Type 2 diabetes	6,377 European ancestry male cases, 5,794 European ancestry female cases, 22,243 European ancestry male controls, 34,619 European ancestry female controls	12,938 European ancestry male cases, 8,553 European ancestry female cases, 904 Pakistani ancestry male cases, 274 Pakistani ancestry female cases, 30,273 European ancestry male controls, 25,374 European ancestry female controls, 2,088 Pakistani ancestry male controls, 384 Pakistani ancestry female controls	7q32.2	KLF14	rs6467314-G	NR	2E-6	(female)	1.09	[1.05-1.13]	Affymetrix, Illumina [up to 2500000] (imputed)	N
1580	chr7	130442447	130442453	rs548547376	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	7q32.2		rs548547376-G	0.614439	3E-9		0.0136949895	[0.0092-0.0182] unit decrease	Affymetrix [93095623] (imputed)	N
1580	chr7	130442603	130442603	rs34518086	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	7q32.2	intergenic	rs34518086-?	0.5138	7E-11		0.0181	[0.013-0.024] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1580	chr7	130444933	130444934	rs3996352	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	7q32.2		rs3996352-A	0.509143	2E-13		0.0286734	[0.021-0.036] unit increase	NR [11722792] (imputed)	N
1580	chr7	130444933	130444934	rs3996352	32341051	Wang X	2020-04-01	BMJ Open Diabetes Res Care	Shared genetic architecture and casual relationship between leptin levels and type 2 diabetes: large-scale cross-trait meta-analysis and Mendelian randomization analysis.	Circulating leptin levels or type 2 diabetes	254,263 individuals	NA	7q32.2	KLF14	rs3996352-?	NR	2E-9				NR [NR]	N
1580	chr7	130444933	130444934	rs3996352	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	HDL cholesterol levels	up to 23,761 African ancestry individuals, 13,171 Asian ancestry individuals, up to 90,272 European ancestry individuals, 6,620 Hispanic individuals	NA	7q32.2		rs3996352-A	0.5568	2E-15		0.0084	[0.0062-0.0106] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1580	chr7	130445428	130445428	rs35363532	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	7q32.2	NR	rs35363532-C	0.508297	3E-22		0.0186209	[0.015-0.022] unit increase	Affymetrix [15000001]	N
1580	chr7	130445428	130445428	rs35363532	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	7q32.2	intergenic	rs35363532-?	NR	2E-39		0.0344	[0.03-0.039] unit decrease	Affymetrix [5701386] (imputed)	N
1580	chr7	130445573	130445574	rs17789506	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Hip circumference variance	346,781 European ancestry individuals	NA	7q32.2	KLF14	rs17789506-?	NR	3E-11				NR [5554549] (imputed)	N
1580	chr7	130445573	130445574	rs17789506	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Hip circumference	346,781 European ancestry individuals	NA	7q32.2	KLF14	rs17789506-?	NR	2E-18				NR [5554549] (imputed)	N
1580	chr7	130445876	130445877	rs11765979	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7q32.2	NR	rs11765979-A	NR	1E-14		0.029	unit increase	Affymetrix [at least 7091467] (imputed)	N
1580	chr7	130445876	130445877	rs11765979	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7q32.2	NR	rs11765979-A	0.52	3E-13	(EA)	0.03	unit increase	Affymetrix [at least 7091467] (imputed)	N
1580	chr7	130445876	130445877	rs11765979	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7q32.2	NR	rs11765979-A	NR	1E-21		0.033	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1580	chr7	130445876	130445877	rs11765979	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7q32.2	NR	rs11765979-A	0.572	1E-6	(Hispanic)	0.061	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1580	chr7	130445876	130445877	rs11765979	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7q32.2	NR	rs11765979-A	0.52	5E-17	(EA)	0.032	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1580	chr7	130445980	130445981	rs1364422	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	7q32.2	KLF14	rs1364422-C	0.719852	5E-35		0.0270358	[0.023-0.031] unit increase	Affymetrix [NR] (imputed)	N
1580	chr7	130445980	130445981	rs1364422	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	7q32.2	KLF14	rs1364422-T	0.2858	1E-9	(EA,women)	0.0308	[0.021-0.041] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1580	chr7	130447129	130447130	rs59326756	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	7q32.2		rs59326756-A	0.706252	5E-11		0.028344	[0.02-0.037] unit increase	NR [11722792] (imputed)	N
1580	chr7	130449457	130449458	rs12667251	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	7q32.2	RP11-36B6.1	rs12667251-A	NR	1E-59		0.0482198	[0.042-0.054] unit decrease	Affymetrix [321788] (imputed)	N
1580	chr7	130449457	130449458	rs12667251	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Waist circumference variance	347,158 European ancestry individuals	NA	7q32.2	KLF14	rs12667251-?	NR	7E-12				NR [5554549] (imputed)	N
1580	chr7	130449841	130449842	rs149522	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	7q32.2		rs149522-C	0.595902	5E-8		0.0228494	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
1580	chr7	130449841	130449842	rs149522	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	7q32.2		rs149522-C	0.595895	7E-13		0.0274275	[0.02-0.035] unit decrease	NR [11722792] (imputed)	N
1580	chr7	130450150	130450151	rs185963	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls	NA	7q32.2	KLF14	rs185963-T	0.434857	2E-9		0.050627008	[0.034-0.067] unit increase	Affymetrix [7288503] (imputed)	N
1580	chr7	130450660	130450661	rs577195	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	7q32.2		rs577195-C	0.582148	3E-10		0.0239683	[0.017-0.031] unit increase	NR [11722792] (imputed)	N
1580	chr7	130455587	130455588	rs1838931	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large HDL	115,082 European ancestry individuals	NA	7q32.2		rs1838931-C	0.679422	8E-10		0.0245021	[0.017-0.032] unit increase	NR [11722792] (imputed)	N
1580	chr7	130455587	130455588	rs1838931	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large HDL	115,082 European ancestry individuals	NA	7q32.2		rs1838931-C	0.679422	3E-10		0.0252416	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
1580	chr7	130455587	130455588	rs1838931	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large HDL particles	115,082 European ancestry individuals	NA	7q32.2		rs1838931-C	0.679422	3E-8		0.022235	[0.014-0.03] unit increase	NR [11722792] (imputed)	N
1580	chr7	130455587	130455588	rs1838931	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	7q32.2		rs1838931-T	NR	1E-10		0.0139	[0.0096-0.0182] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
1580	chr7	130457913	130457914	rs1562396	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	7q32.2	KLF14	rs1562396-G	0.3186	1E-17		1.06	[1.05-1.08]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1580	chr7	130457930	130457931	rs1562398	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	7q32.2	NR	rs1562398-G	0.4169	2E-18		0.041	[0.032-0.05] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1580	chr7	130457930	130457931	rs1562398	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7q32.2	NR	rs1562398-C	NR	3E-13		0.028	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1580	chr7	130457930	130457931	rs1562398	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7q32.2	NR	rs1562398-C	0.568	2E-11	(EA)	0.028	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1580	chr7	130457930	130457931	rs1562398	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7q32.2	NR	rs1562398-C	NR	4E-20		0.032	unit increase	Affymetrix [at least 7091467] (imputed)	N
1580	chr7	130457930	130457931	rs1562398	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7q32.2	NR	rs1562398-C	0.568	2E-14	(EA)	0.029	unit increase	Affymetrix [at least 7091467] (imputed)	N
1580	chr7	130457930	130457931	rs1562398	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7q32.2	NR	rs1562398-C	0.49	6E-6	(Hispanic)	0.056	unit increase	Affymetrix [at least 7091467] (imputed)	N
1580	chr7	130459241	130459242	rs34748838	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	7q32.2	NR	rs34748838-T	0.490131	2E-20		0.00808041	[0.0064-0.0097] unit increase	Affymetrix [16582909] (imputed)	N
1580	chr7	130459241	130459242	rs34748838	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	7q32.2	NR	rs34748838-T	0.490131	2E-9		0.00599464	[0.0042-0.0078] unit increase	Affymetrix [16582965] (imputed)	N
1580	chr7	130459241	130459242	rs34748838	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	7q32.2	KLF14	rs34748838-T	0.489913	2E-15		0.04805376	[0.036-0.06] unit decrease	Affymetrix [7288503] (imputed)	N
1580	chr7	130461858	130461859	rs35964477	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	7q32.2	NR	rs35964477-A	0.488581	4E-14		0.016932609	[0.013-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1580	chr7	130461858	130461859	rs35964477	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	7q32.2	NR	rs35964477-A	0.488589	1E-14		0.01731081	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1580	chr7	130461858	130461859	rs35964477	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	7q32.2		rs35964477-A	0.488573	4E-12		0.0154870795	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1580	chr7	130461858	130461859	rs35964477	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	7q32.2		rs35964477-A	0.488573	2E-12		0.015698439	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1580	chr7	130465653	130465654	rs1447059	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	7q32.2	RP11-36B6.1	rs1447059-G	NR	2E-30		0.033134	[0.027-0.039] unit increase	Affymetrix [319769] (imputed)	N
1580	chr7	130465653	130465654	rs1447059	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	7q32.2	RP11-36B6.1	rs1447059-G	NR	3E-31		0.0335502	[0.028-0.039] unit increase	Affymetrix [319769] (imputed)	N
1580	chr7	130465653	130465654	rs1447059	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	7q32.2	RP11-36B6.1	rs1447059-G	NR	9E-39		0.0375264	[0.032-0.043] unit decrease	Affymetrix [321016] (imputed)	N
1580	chr7	130466853	130466854	rs972283	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	7q32.2		rs972283-G	NR	8E-18		0.0435	[0.034-0.053] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1580	chr7	130466853	130466854	rs972283	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Triglycerides	429,011 European ancestry individuals	NA	7q32.2		rs972283-A	0.49	2E-62		0.033	mmol/L decrease	NR [NR] (imputed)	N
1580	chr7	130466853	130466854	rs972283	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Sex hormone-binding globulin levels	389,354 European ancestry individuals	NA	7q32.2		rs972283-A	0.49	4E-9		0.012	nmol/L increase	NR [NR] (imputed)	N
1580	chr7	130466853	130466854	rs972283	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	7q32.2		rs972283-A	0.49	9E-98				NR [NR] (imputed)	N
1580	chr7	130466853	130466854	rs972283	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	High density lipoprotein cholesterol levels	392,965 European ancestry individuals	NA	7q32.2		rs972283-A	0.49	2E-60		0.03	mmol/L increase	NR [NR] (imputed)	N
1580	chr7	130466853	130466854	rs972283	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	7q32.2		rs972283-A	0.49	2E-22		0.014	% increase	NR [NR] (imputed)	N
1580	chr7	130466853	130466854	rs972283	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Alanine aminotransferase levels	429,203 European ancestry individuals	NA	7q32.2		rs972283-A	0.49	4E-9		0.012	U/L decrease	NR [NR] (imputed)	N
1580	chr7	130466853	130466854	rs972283	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Hypertension	810,865 European ancestry individuals	354,096 European ancestry individuals	7q32.2		rs972283-A	0.4939	1E-15		7.9997	z score decrease	Affymetrix, Illumina [239843] (imputed)	N
1580	chr7	130466853	130466854	rs972283	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	7q32.2		rs972283-A	0.489	3E-16		0.11219537	[0.085-0.139] mmHg decrease	Affymetrix, Illumina [242866] (imputed)	N
1580	chr7	130466853	130466854	rs972283	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels adjusted for BMI	56,708 European ancestry, African American or Afro-Caribbean, East Asian ancestry, Hispanic or Latin American individuals		7q32.2	KLF14	rs972283-G	0.55	6E-18		0.053	[0.041-0.065] unit decrease	Illumina [232237]	N
1580	chr7	130466853	130466854	rs972283	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels adjusted for BMI	56,708 European ancestry, African American or Afro-Caribbean, East Asian ancestry, Hispanic or Latin American individuals		7q32.2	KLF14	rs972283-G	0.55	6E-14		0.071	[0.053-0.089] unit decrease	Illumina [92057]	N
1580	chr7	130466853	130466854	rs972283	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels adjusted for BMI	49,830 European ancestry individuals		7q32.2	KLF14	rs972283-G	0.521	8E-18		0.079	[0.059-0.099] unit decrease	Illumina [54056]	N
1580	chr7	130466853	130466854	rs972283	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels adjusted for BMI	49,830 European ancestry individuals		7q32.2	KLF14	rs972283-G	0.521	4E-18		0.056	[0.044-0.068] unit decrease	Illumina [204609]	N
1580	chr7	130466853	130466854	rs972283	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels adjusted for BMI	32,886 European ancestry, African American or Afro-Caribbean, East Asian ancestry, Hispanic or Latin American women		7q32.2	KLF14	rs972283-G	0.555	4E-15		0.063	[0.047-0.079] unit decrease	Illumina [227473]	N
1580	chr7	130466853	130466854	rs972283	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels adjusted for BMI	32,886 European ancestry, African American or Afro-Caribbean, East Asian ancestry, Hispanic or Latin American women		7q32.2	KLF14	rs972283-G	0.555	3E-12		0.086	[0.062-0.11] unit decrease	Illumina [86054]	N
1580	chr7	130466853	130466854	rs972283	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels adjusted for BMI	27,947 European ancestry women		7q32.2	KLF14	rs972283-G	0.521	1E-14		0.066	[0.048-0.084] unit decrease	Illumina [193169]	N
1580	chr7	130466853	130466854	rs972283	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels adjusted for BMI	27,947 European ancestry women		7q32.2	KLF14	rs972283-G	0.521	1E-12		0.096	[0.069-0.123] unit decrease	Illumina [49530]	N
1580	chr7	130466853	130466854	rs972283	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels adjusted for BMI	23,822 European ancestry, African American or Afro-Caribbean, East Asian ancestry, Hispanic or Latin American men		7q32.2	KLF14	rs972283-G	0.544	2E-6		0.045	[0.027-0.063] unit decrease	Illumina [220721]	N
1580	chr7	130466853	130466854	rs972283	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels adjusted for BMI	21,883 European ancestry men		7q32.2	KLF14	rs972283-G	0.522	5E-7		0.048	[0.028-0.068] unit decrease	Illumina [185190]	N
1580	chr7	130466853	130466854	rs972283	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels	56,802 European ancestry, African American or Afro-Caribbean, East Asian ancestry, Hispanic or Latin American individuals		7q32.2	KLF14	rs972283-G	0.551	6E-10		0.038	[0.026-0.05] unit decrease	Illumina [232255]	N
1580	chr7	130466853	130466854	rs972283	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels	56,802 European ancestry, African American or Afro-Caribbean, East Asian ancestry, Hispanic or Latin American individuals		7q32.2	KLF14	rs972283-G	0.551	3E-7		0.049	[0.031-0.067] unit decrease	Illumina [92082]	N
1580	chr7	130466853	130466854	rs972283	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels	49,909 European ancestry individuals		7q32.2	KLF14	rs972283-G	0.521	1E-7		0.054	[0.034-0.074] unit decrease	Illumina [54083]	N
1580	chr7	130466853	130466854	rs972283	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels	49,909 European ancestry individuals		7q32.2	KLF14	rs972283-G	0.521	1E-10		0.041	[0.029-0.053] unit decrease	Illumina [204641]	N
1580	chr7	130466853	130466854	rs972283	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels	32,940 European ancestry, African American or Afro-Caribbean, East Asian ancestry, Hispanic or Latin American women		7q32.2	KLF14	rs972283-G	0.555	9E-6		0.055	[0.031-0.079] unit decrease	Illumina [86076]	N
1580	chr7	130466853	130466854	rs972283	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels	32,940 European ancestry, African American or Afro-Caribbean, East Asian ancestry, Hispanic or Latin American women		7q32.2	KLF14	rs972283-G	0.555	7E-8		0.043	[0.027-0.059] unit decrease	Illumina [227495]	N
1580	chr7	130466853	130466854	rs972283	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels	27,987 European ancestry women		7q32.2	KLF14	rs972283-G	0.521	6E-6		0.062	[0.035-0.089] unit decrease	Illumina [49551]	N
1580	chr7	130466853	130466854	rs972283	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels	27,987 European ancestry women		7q32.2	KLF14	rs972283-G	0.521	2E-8		0.048	[0.03-0.066] unit decrease	Illumina [193201]	N
1580	chr7	130466853	130466854	rs972283	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls	NA	7q32.2	KLF14	rs972283-A	0.491048	7E-9		0.04650017	[0.031-0.062] unit decrease	Affymetrix [7288503] (imputed)	N
1580	chr7	130466853	130466854	rs972283	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls	NA	7q32.2	KLF14	rs972283-A	0.488765	1E-10		0.03592304	[0.025-0.047] unit decrease	Affymetrix [7288503] (imputed)	N
1580	chr7	130466853	130466854	rs972283	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	7q32.2	NR	rs972283-?	NR	5E-10		0.13101	[0.09-0.172] unit decrease	Affymetrix [7794483] (imputed)	N
1580	chr7	130466853	130466854	rs972283	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	7q32.2	NR	rs972283-?	NR	2E-7	(female)	0.18011	[0.11-0.25] unit decrease	Affymetrix [7794483] (imputed)	N
1580	chr7	130466853	130466854	rs972283	20581827	Voight BF	2010-06-27	Nat Genet	Twelve type 2 diabetes susceptibility loci identified through large-scale association analysis.	Type 2 diabetes	8,130 European ancestry cases, 38,987 European ancestry controls	Up to 34,412 European ancestry cases, 59,925 European ancestry controls	7q32.2	KLF14	rs972283-G		2E-10		1.07	[1.05-1.10]	Affymetrix, Illumina [2426886] (imputed)	N
1580	chr7	130466965	130466966	rs972284	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls, 20,367 East Asian ancestry cases, 158,359 East Asian ancestry controls	NA	7q32.2		rs972284-T	NR	5E-9		0.0493	[0.033-0.066] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1580	chr7	130468014	130468015	rs61462211	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	7q32.2		rs61462211-G	0.67534	2E-10		0.0263993	[0.018-0.035] unit increase	NR [11722792] (imputed)	N
1580	chr7	130488533	130488534	rs7788814	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	7q32.3	NR	rs7788814-C	NR	5E-12		0.0174	[0.013-0.022] unit increase	Affymetrix [9000000] (imputed)	N
1580	chr7	130525929	130525930	rs34204362	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	7q32.3	NR	rs34204362-T	NR	3E-9		0.0288	[0.019-0.038] unit decrease	Affymetrix [9000000] (imputed)	N
1580	chr7	130540407	130540408	rs7788240	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	7q32.3	NR	rs7788240-T	NR	2E-11		0.0332	[0.023-0.043] unit increase	Affymetrix [9000000] (imputed)	N
1581	chr7	130565696	130565697	rs17165207	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	7q32.3	NR	rs17165207-C	NR	4E-22		0.0416	[0.033-0.05] unit increase	Affymetrix [9000000] (imputed)	N
1581	chr7	130575803	130575803	rs71789978	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	7q32.3	AC016831.7, MIR29A	rs71789978-CAAA	0.858463	1E-9		0.020227807	[0.014-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1581	chr7	130575883	130575884	rs9656395	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	7q32.3	AC016831.7, MIR29A	rs9656395-G	0.095196	2E-14		0.028938672	[0.022-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
1581	chr7	130575883	130575884	rs9656395	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	7q32.3	AC016831.7, MIR29A	rs9656395-G	0.095174	7E-9		0.0219156	[0.014-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
1581	chr7	130576445	130576446	rs9649546	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	7q32.3	AC016831.7, MIR29A	rs9649546-C	0.09558	8E-9		0.021690268	[0.014-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
1581	chr7	130576445	130576446	rs9649546	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	7q32.3	NR	rs9649546-C	0.095362	3E-11		0.02099	[0.015-0.027] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1581	chr7	130576445	130576446	rs9649546	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q32.3	NR	rs9649546-C	0.0777773	1E-10				Affymetrix, Illumina [24246363] (imputed)	N
1581	chr7	130576445	130576446	rs9649546	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	7q32.3	NR	rs9649546-C	0.095385	2E-10		0.019938	[0.014-0.026] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
1581	chr7	130576445	130576446	rs9649546	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	7q32.3		rs9649546-?	NR	2E-17				NR [~ 8900000] (imputed)	N
1581	chr7	130576445	130576446	rs9649546	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	7q32.3		rs9649546-?	NR	8E-11				NR [~ 8900000] (imputed)	N
1581	chr7	130577292	130577293	rs9690338	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	7q32.3	AC016831.1	rs9690338-A	0.9163	1E-11		0.0233	[0.017-0.03] unit decrease	Affymetrix [18391927] (imputed)	N
1581	chr7	130583057	130583058	rs205759	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	7q32.3	NR	rs205759-T	NR	2E-9		0.0314	[0.021-0.042] unit decrease	Affymetrix [9000000] (imputed)	N
1581	chr7	130583441	130583442	rs62473520	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	7q32.3	KLF14	rs62473520-T	0.922001	3E-8		0.0211243	[0.014-0.029] unit increase	Affymetrix [NR] (imputed)	N
1581	chr7	130584683	130584684	rs125124	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	7q32.3		rs125124-G	NR	5E-17		0.0188	[0.014-0.023] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
1581	chr7	130584683	130584684	rs125124	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	7q32.3		rs125124-G	NR	4E-16		0.0179	[0.014-0.022] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
1581	chr7	130584683	130584684	rs125124	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Basal cell carcinoma	31,787 European ancestry cases, 619,351 European ancestry controls	NA	7q32.3	MIR29A	rs125124-C	0.703573	1E-24		1.1	[1.08-1.12]	Affymetrix, Illumina [up to 9061544] (imputed)	N
1581	chr7	130585491	130585492	rs157934	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	7q32.3		rs157934-?	NR	1E-20		0.894473	[0.87-0.92]	NR [685523]	N
1581	chr7	130585491	130585492	rs157934	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Cancer	56,634 White British ancestry cases, 218,196 White British ancestry controls	NA	7q32.3		rs157934-?	NR	1E-8		0.958458	[0.94-0.97]	NR [688737]	N
1581	chr7	130585491	130585492	rs157934	33549134	Adolphe C	2021-02-06	Genome Med	Genetic and functional interaction network analysis reveals global enrichment of regulatory T cell genes influencing basal cell carcinoma susceptibility.	Basal cell carcinoma	17,416 European ancestry cases, 375,455 European ancestry controls	NA	7q32.3	LINC-PINT	rs157934-C	0.304587	7E-21		0.11276421	[0.089-0.136] unit decrease	Affymetrix [7260263] (imputed)	N
1581	chr7	130585491	130585492	rs157934	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	7q32.3	NR	rs157934-C	NR	4E-17		0.0229	[0.018-0.028] unit increase	Affymetrix [9000000] (imputed)	N
1581	chr7	130585491	130585492	rs157934	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	7q32.3	NR	rs157934-C	NR	2E-14		0.0208	[0.016-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
1581	chr7	130585491	130585492	rs157934	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	7q32.3	NR	rs157934-C	NR	2E-13		0.02	[0.015-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
1581	chr7	130585491	130585492	rs157934	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	7q32.3	NR	rs157934-C	NR	2E-109		0.0576	[0.053-0.063] unit increase	Affymetrix [9000000] (imputed)	N
1581	chr7	130585491	130585492	rs157934	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	7q32.3	NR	rs157934-C	0.30508100000000005	3E-9		0.00833858	[0.0056-0.0111] unit increase	Affymetrix [16578495] (imputed)	N
1581	chr7	130585491	130585492	rs157934	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Keratinocyte cancer (MTAG)	at least 18,538 European ancestry cases, at least 340,302 European ancestry controls	NA	7q32.3	MIR29A	rs157934-T	0.694656	2E-20		1.09	[1.07-1.11]	Affymetrix [7600000] (imputed)	N
1581	chr7	130585552	130585553	rs157935	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Skin cancer	25,928 European ancestry cases, 466,275 European ancestry controls, 154 East Asian ancestry cases, 178,572 East Asian ancestry controls	NA	7q32.3		rs157935-G	NR	6E-15		0.0808	[0.061-0.101] unit decrease	Affymetrix, Illumina [25845421] (imputed)	N
1581	chr7	130585552	130585553	rs157935	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	7q32.3	NR	rs157935-G	0.30333600000000005	1E-39		0.0115652	[0.0098-0.0134] unit increase	Affymetrix [16582909] (imputed)	N
1581	chr7	130585552	130585553	rs157935	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	7q32.3	NR	rs157935-G	0.303547	5E-27		0.0124201	[0.01-0.0149] unit increase	Affymetrix [16582621] (imputed)	N
1581	chr7	130585552	130585553	rs157935	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	7q32.3	NR	rs157935-G	0.30333600000000005	6E-29		0.0109559	[0.009-0.0129] unit increase	Affymetrix [16582965] (imputed)	N
1581	chr7	130585552	130585553	rs157935	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	7q32.3	NR	rs157935-G	0.303547	2E-22		0.0121026	[0.0095-0.0147] unit increase	Affymetrix [16582614] (imputed)	N
1581	chr7	130585552	130585553	rs157935	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Non-melanoma skin cancer	5,912 European ancestry cases, 181,740 European ancestry controls		7q32.3	LINC-PINT	rs157935-G	NR	9E-10		1.14	[1.09-1.19]	Affymetrix [5734850] (imputed)	N
1581	chr7	130585552	130585553	rs157935	27539887	Chahal HS	2016-08-19	Nat Commun	Genome-wide association study identifies 14 novel risk alleles associated with basal cell carcinoma.	Basal cell carcinoma	12.945 European ancestry cases, 274,252 European ancestry controls	4,242 European ancestry cases, 12,802 European ancestry controls	7q32.3	KLF14	rs157935-T	0.71	5E-6		1.06	[NR]	Illumina [at least 560000] (imputed)	N
1581	chr7	130585552	130585553	rs157935	25855136	Stacey SN	2015-04-09	Nat Commun	New basal cell carcinoma susceptibility loci.	Basal cell carcinoma	4,572 European ancestry cases, 266,358 European ancestry controls	up to 956 European ancestry cases, up to 4,214 European ancestry controls, 526 cases, 528 controls	7q32.3	KLF14	rs157935-T	0.675	4E-20		1.21	[NR]	Illumina [24988228] (imputed)	N
1581	chr7	130585552	130585553	rs157935	24403052	Stacey SN	2014-01-08	Hum Mol Genet	Germline sequence variants in TGM3 and RGS22 confer risk of basal cell carcinoma.	Basal cell carcinoma	4,208 European ancestry cases, 109,408 European ancestry controls	up to 1,480 European ancestry cases, up to 4,610 European ancestry controls	7q32.3	KLF14	rs157935-T		9E-11		1.23	[1.15-1.31]	Illumina [38500000] (imputed)	N
1581	chr7	130589790	130589791	rs205761	32047095	Traglia M	2020-02-11	Genetics	Genetic Contributions to Maternal and Neonatal Vitamin D Levels.	Neonatal total 25-hydroxyvitamin D levels (maternal genetic effect)	269 European ancestry individuals, 323 Hispanic individuals, 115 East Asian ancestry individuals, 23 African American individuals, 23 South Asian ancestry individuals, 23 individuals	NA	7q32.3	LINC00513, MKLN1	rs205761-?	NR	8E-7		0.5	[0.3-0.7] unit increase	Affymetrix [629686]	N
1581	chr7	130607778	130607779	rs73161913	33632709	Huyghe JR	2021-02-25	Gut	Genetic architectures of proximal and distal colorectal cancer are partly distinct.	Rectal cancer	16,212 European ancestry cases, 64,159 European ancestry controls	NA	7q32.3	KLF14, LINC00513	rs73161913-G	0.9432	6E-6		1.15	1.08-1.22	Affymetrix, Illumina [11358342] (imputed)	N
1581	chr7	130607778	130607779	rs73161913	33632709	Huyghe JR	2021-02-25	Gut	Genetic architectures of proximal and distal colorectal cancer are partly distinct.	Distal/Left-sided colorectal cancer	30,588 European ancestry cases, 64,159 European ancestry controls	NA	7q32.3	KLF14, LINC00513	rs73161913-G	0.943	1E-9		1.16	[1.10-1.22]	Affymetrix, Illumina [11947015] (imputed)	N
1581	chr7	130607778	130607779	rs73161913	33632709	Huyghe JR	2021-02-25	Gut	Genetic architectures of proximal and distal colorectal cancer are partly distinct.	Distal colorectal cancer	14,376 European ancestry cases, 64,159 European ancestry controls	NA	7q32.3	KLF14, LINC00513	rs73161913-G	0.9432	2E-7		1.18	[1.11-1.26]	Affymetrix, Illumina [11353757] (imputed)	N
1581	chr7	130612084	130612085	rs205711	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	7q32.3	AC016831.7	rs205711-G	0.828532	5E-9		0.01721626	[0.011-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1581	chr7	130620722	130620723	rs35908158	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	7q32.3		rs35908158-?	NR	8E-9				NR [~ 8900000] (imputed)	N
1581	chr7	130622563	130622564	rs17165295	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7q32.3		rs17165295-?	NR	1E-17				NR [~ 8900000] (imputed)	N
1581	chr7	130626947	130626948	rs12533527	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	7q32.3		rs12533527-T	NR	2E-16		0.0132	[0.01-0.016] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1581	chr7	130627013	130627014	rs12533596	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	7q32.3	NR	rs12533596-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
1581	chr7	130640631	130640632	rs35981237	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	7q32.3	NR	rs35981237-?	NR	2E-6		0.0398	[0.023-0.056] unit decrease	Illumina [at least 560000] (imputed)	N
1581	chr7	130653850	130653851	rs2048672	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	7q32.3	NR	rs2048672-A	NR	9E-11		0.017	[0.012-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
1581	chr7	130653850	130653851	rs2048672	21908515	Cai Q	2011-09-09	Hum Mol Genet	Genome-wide association study identifies breast cancer risk variant at 10q21.2: results from the Asia Breast Cancer Consortium.	Breast cancer	2,062 East Asian ancestry cases, 2,066 East Asian ancestry controls	15,091 East Asian ancestry cases, 14,877 East Asian ancestry controls	7q32.3	NR	rs2048672-C	0.45	6E-6		1.11	[1.05-1.17]	Affymetrix [684457]	N
1581	chr7	130667120	130667121	rs4593472	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	7q32.3		rs4593472-T	NR	2E-13		0.96	[0.94-0.97]	Affymetrix, Illumina [NR] (imputed)	N
1581	chr7	130667120	130667121	rs4593472	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	7q32.3	FLJ43663	rs4593472-C	0.65	2E-11	(EA)	1.0309278	[1.01-1.05] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
1581	chr7	130667120	130667121	rs4593472	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	46,785 European ancestry cases, 42,892 European ancestry controls	NA	7q32.3	FLJ43663	rs4593472-C	0.65	4E-6		1.0526316		Affymetrix, Illumina [~ 14000000] (imputed)	N
1581	chr7	130667120	130667121	rs4593472	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	15,748 European ancestry cases, 18,084 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls	7q32.3	FLJ43663	rs4593472-C	0.65	2E-9		1.0526316	[1.03-1.06]	Affymetrix, Illumina [~ 11600000] (imputed)	N
1581	chr7	130668617	130668618	rs6957511	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Squamous cell lung carcinoma	7,426 European ancestry cases, 55,627 European ancestry controls	NA	7q32.3	LINC-PINT	rs6957511-C	0.397848632	1E-6		1.0997349	[1.058667987-1.142394783]	Illumina [10439017] (imputed)	N
1581	chr7	130674480	130674481	rs68056147	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	7q32.3	NR	rs68056147-A	0.299	5E-13	(EA)	0.0501	[0.037-0.064] unit increase	Illumina [~ 11800000] (imputed)	N
1582	chr7	130680520	130680521	rs6971499	29422604	Klein AP	2018-02-08	Nat Commun	Genome-wide meta-analysis identifies five new susceptibility loci for pancreatic cancer.	Pancreatic cancer	9,040 European ancestry cases, 12,496 European ancestry controls	up to 2,737 cases, up to 4,752 controls	7q32.3	LINC-PINT	rs6971499-T	0.84	7E-14		1.2345679	[1.15-1.32]	Illumina [11381182] (imputed)	N
1582	chr7	130680520	130680521	rs6971499	26098869	Childs EJ	2015-06-22	Nat Genet	Common variation at 2p13.3, 3q29, 7p13 and 17q25.1 associated with susceptibility to pancreatic cancer.	Pancreatic cancer	7,638 cases, 7,364 controls	2,287 cases, 4,205 controls	7q32.3	LINC-PINT	rs6971499-?	NR	7E-6		1.2345679	[1.14-1.35]	Illumina [866891] (imputed)	N
1582	chr7	130680520	130680521	rs6971499	25086665	Wolpin BM	2014-08-03	Nat Genet	Genome-wide association study identifies multiple susceptibility loci for pancreatic cancer.	Pancreatic cancer	1,582 European ancestry cases, 5,203 European ancestry controls	6,101 European ancestry cases, 9,194 European ancestry controls	7q32.3	COPG2, TSGA13, KLF14, MIR29A, MIR29B1, LOC646329, LINC-PINT, MKLN1	rs6971499-T	0.853	3E-12		1.27	[1.19-1.35]	Illumina [608202]	N
1582	chr7	130691758	130691759	rs10234094	34020725	Reddy JS	2021-05-21	Acta Neuropathol Commun	Genome-wide analysis identifies a novel LINC-PINT splice variant associated with vascular amyloid pathology in Alzheimer's disease.	Cerebral amyloid angiopathy x APOEe4 status interaction in Alzheimer's disease	534 European ancestry APOEe4 carriers, 287 European ancestry APOEe4 non-carriers	NA	7q32.3	LINC-PINT	rs10234094-C	0.09	1E-7				Illumina [1679420] (imputed)	N
1582	chr7	130691758	130691759	rs10234094	34020725	Reddy JS	2021-05-21	Acta Neuropathol Commun	Genome-wide analysis identifies a novel LINC-PINT splice variant associated with vascular amyloid pathology in Alzheimer's disease.	Cerebral amyloid angiopathy in APOEe4 non-carrier Alzheimer's disease	287 European ancestry individuals	NA	7q32.3	LINC-PINT	rs10234094-C	0.09	2E-8		0.37	[0.24-0.49] unit decrease	Illumina [1679420] (imputed)	N
1582	chr7	130720804	130720805	rs10265693	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	7q32.3	LINC-PINT	rs10265693-G	0.086133972	2E-6		1.0986036	[1.056940879-1.141908633]	Illumina [10439017] (imputed)	N
1582	chr7	130729393	130729394	rs58270997	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Brown vs. black hair color	269,394 British ancestry brown hair individuals, 14,526 British ancestry black hair individuals	NA	7q32.3	LINC-PINT	rs58270997-?	NR	2E-11		1.0968521	NR	Affymetrix [9154080] (imputed)	N
1582	chr7	130737981	130737982	rs2015210	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	7q32.3		rs2015210-T	0.248	2E-12				Affymetrix [10369434] (imputed)	N
1582	chr7	130737981	130737982	rs2015210	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	7q32.3	LINC-PINT	rs2015210-G	0.750788	4E-25		0.027069507	[0.022-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
1582	chr7	130737981	130737982	rs2015210	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	7q32.3	LINC-PINT	rs2015210-G	0.75083	3E-17		0.021654392	[0.017-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1582	chr7	130738665	130738666	rs7778378	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous malignant melanoma	36,760 European ancestry cases, 375,188 European ancestry controls	NA	7q32.3	MKLN1	rs7778378-T	0.752464	9E-9		1.0711225	NR	Affymetrix, Illumina [NR] (imputed)	N
1582	chr7	130742065	130742066	rs7803075	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	7q32.3		rs7803075-G	NR	3E-20		0.022	[0.017-0.027] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1582	chr7	130742065	130742066	rs7803075	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	7q32.3		rs7803075-G	NR	8E-14		0.0188	[0.014-0.024] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
1582	chr7	130742065	130742066	rs7803075	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	7q32.3	LINC-PINT	rs7803075-G	0.739172	6E-24		0.025418928	[0.02-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
1582	chr7	130742065	130742066	rs7803075	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q32.3	NR	rs7803075-G	0.594596	3E-30				Affymetrix, Illumina [24649327] (imputed)	N
1582	chr7	130742065	130742066	rs7803075	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	7q32.3	NR	rs7803075-G	0.7342	5E-31		0.02444	[0.02-0.029] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1582	chr7	130742065	130742066	rs7803075	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q32.3	NR	rs7803075-G	0.639771	1E-17				Affymetrix, Illumina [23114412] (imputed)	N
1582	chr7	130742065	130742066	rs7803075	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	7q32.3	NR	rs7803075-G	0.73519	2E-18		0.019268	[0.015-0.024] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
1582	chr7	130742065	130742066	rs7803075	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q32.3	NR	rs7803075-G	0.632148	1E-10				Affymetrix, Illumina [23467995] (imputed)	N
1582	chr7	130742065	130742066	rs7803075	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	7q32.3	NR	rs7803075-G	0.735284	2E-11		0.014372	[0.01-0.019] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1582	chr7	130742065	130742066	rs7803075	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous melanoma or hair colour	36,760 European ancestry cutaneous melanoma cases, 375,188 European ancestry controls, 352,662 European ancestry individuals	NA	7q32.3	RNU6-1010P	rs7803075-A	0.316908	1E-76				Affymetrix, Illumina [NR] (imputed)	N
1582	chr7	130742065	130742066	rs7803075	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	7q32.3		rs7803075-?	NR	3E-26				NR [~ 8900000] (imputed)	N
1582	chr7	130742065	130742066	rs7803075	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	7q32.3		rs7803075-?	NR	9E-8				NR [~ 8900000] (imputed)	N
1582	chr7	130743719	130743720	rs4336553	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	7q32.3	NR	rs4336553-G	0.792536	2E-21		0.022248	[0.018-0.027] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1582	chr7	130746954	130746955	rs62471615	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	7q32.3		rs62471615-A	NR	7E-11		0.0163	[0.011-0.021] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
1582	chr7	130746954	130746955	rs62471615	33057200	Bao EL	2020-10-14	Nature	Inherited myeloproliferative neoplasm risk affects haematopoietic stem cells.	Myeloproliferative neoplasms	1,086 British ancestry cases, 407,155 British ancestry controls, 640 Finnish ancestry cases, 176,259 Finnish ancestry controls	NA	7q32.3	MKLN1	rs62471615-C	0.3037	7E-19		1.3	1.23-1.38	Affymetrix [6845584] (imputed)	N
1582	chr7	130747305	130747306	rs7793008	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	7q32.3	LINC-PINT	rs7793008-G	0.204825	8E-15		0.02125747	[0.016-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1582	chr7	130754811	130754812	rs4731742	26237428	Law MH	2015-08-03	Nat Genet	Genome-wide meta-analysis identifies five new susceptibility loci for cutaneous malignant melanoma.	Cutaneous malignant melanoma	12,874 European ancestry cases, 23,203 European ancestry controls	785 European ancestry cases, 791 European ancestry controls, 2,331 cases, 2,415 controls	7q32.3	LINC-PINT	rs4731742-G	0.3	4E-7		0.12	[NR] unit decrease	Affymetrix, Illumina [at least 1569314] (imputed)	N
1582	chr7	130758575	130758576	rs12669378	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	7q32.3	LINC-PINT	rs12669378-T	0.735381	1E-39		0.033682503	[0.029-0.039] unit decrease	Affymetrix [93095623] (imputed)	N
1582	chr7	130758575	130758576	rs12669378	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	7q32.3		rs12669378-?	NR	3E-99				NR [~ 8900000] (imputed)	N
1582	chr7	130758575	130758576	rs12669378	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	7q32.3		rs12669378-?	NR	3E-14				NR [~ 8900000] (imputed)	N
1582	chr7	130758575	130758576	rs12669378	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	7q32.3	LINC-PINT	rs12669378-T	0.7355	3E-13		0.03012393	[0.022-0.038] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1582	chr7	130759797	130759798	rs1036646	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	7q32.3	NR	rs1036646-T	0.205538	1E-17		0.0325115	[0.025-0.04] unit increase	NR [19129689] (imputed)	N
1582	chr7	130760317	130760318	rs66871626	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q32.3	NR	rs66871626-T	0.247276	1E-20				Affymetrix, Illumina [23472807] (imputed)	N
1582	chr7	130760317	130760318	rs66871626	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	7q32.3		rs66871626-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1582	chr7	130761234	130761235	rs10954300	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q32.3	NR	rs10954300-A	0.598013	5E-29				Affymetrix, Illumina [24588908] (imputed)	N
1582	chr7	130761234	130761235	rs10954300	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	7q32.3	NR	rs10954300-A	0.731089	1E-31		0.024246	[0.02-0.028] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1582	chr7	130761234	130761235	rs10954300	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	7q32.3	LINC-PINT	rs10954300-?	NR	9E-16		1.0733069	NR	Affymetrix [9154080] (imputed)	N
1583	chr7	130812962	130812963	rs114034759	27769005	Nassan M	2016-09-30	J Affect Disord	A genome wide association study suggests the association of muskelin with early onset bipolar disorder: Implications for a GABAergic epileptogenic neurogenesis model.	Bipolar disorder (early onset)	600 European ancestry cases, 1,811 European ancestry controls	142 European ancestry cases, 746 European ancestry controls	7q32.3	MKLN1	rs114034759-A	NR	6E-7		1.83	[NR]	Affymetrix, Illumina [7859701] (imputed)	N
1583	chr7	130819081	130819082	rs118047622	26569114	Brown EL	2015-11-16	PLoS One	Genome-Wide Association Study of Staphylococcus aureus Carriage in a Community-Based Sample of Mexican-Americans in Starr County, Texas.	Staphylococcus aureus nasal carriage (persistent)	141 Mexican American persistent carrier individuals, 620 Mexican American non-carrier individuals	NA	7q32.3	LINC-PINT, MKLN1	rs118047622-C	0.13	2E-6		2.57	[1.74-3.80]	Affymetrix, Illumina [at least 603042] (imputed)	N
1583	chr7	130887266	130887267	rs28717071	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Melanoma	6,777 European ancestry cases, 410,350 European ancestry controls	NA	7q32.3		rs28717071-A	0.120115	5E-7		1.1384335	NR	Affymetrix [7846216] (imputed)	N
1583	chr7	130887686	130887687	rs6467366	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	7q32.3	MKLN1	rs6467366-C	0.804225	5E-10		0.0143005	[0.0098-0.0188] unit decrease	NR [13737936] (imputed)	N
1583	chr7	130887686	130887687	rs6467366	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	7q32.3		rs6467366-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1583	chr7	130900120	130900121	rs10265216	20038947	Shyn SI	2009-12-29	Mol Psychiatry	Novel loci for major depression identified by genome-wide association study of Sequenced Treatment Alternatives to Relieve Depression and meta-analysis of three studies.	Major depressive disorder (broad)	3,957 European ancestry cases, 3,428 European ancestry controls	NA	7q32.3	AK294384	rs10265216-A	0.28	3E-6		1.19	[NR]	Affymetrix, Perlegen [2391203] (imputed)	N
1583	chr7	130907782	130907783	rs78706986	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Nevus count or cutaneous melanoma	36,760 European ancestry cutaneous melanoma cases, 375,188 European ancestry controls, 12,930 European ancestry individuals, 52,847 individuals	NA	7q32.3	RNU6-1010P	rs78706986-G	0.9166769	1E-11				Affymetrix, Illumina [NR] (imputed)	N
1583	chr7	130932662	130932663	rs11514963	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in never smokers	2,355 European ancestry cases,  7,504 European ancestry controls	NA	7q32.3	MKLN1	rs11514963-C	0.195714091	8E-8		1.3071538	[1.185410904-1.44139993]	Illumina [10439017] (imputed)	N
1584	chr7	130949240	130949241	rs189745822	31996736	Elsheikh SSM	2020-01-29	Sci Rep	Genome-Wide Association Study of Brain Connectivity Changes for Alzheimer's Disease.	Longitudinal brain connectivity change (Louvain modularity)	57 European ancestry individuals	NA	7q32.3	NR	rs189745822-C	NR	2E-6		4.8	z score decrease	NR [9015039] (imputed)	N
1584	chr7	130963770	130963771	rs2129561	30046033	van Setten J	2018-07-25	Nat Commun	PR interval genome-wide association meta-analysis identifies 50 loci associated with atrial and atrioventricular electrical activity.	PR interval	92,340 European ancestry individuals	NA	7q32.3	MKLN1	rs2129561-A	0.42	3E-15		1.0	[0.76-1.24] ms decrease	Affymetrix, Illumina [2712613] (imputed)	N
1584	chr7	130964536	130964537	rs34990159	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	7q32.3		rs34990159-?	NR	4E-20				NR [~ 8900000] (imputed)	N
1584	chr7	130965408	130965409	rs138186803	27798624	Eppinga RN	2016-10-31	Nat Genet	Identification of genomic loci associated with resting heart rate and shared genetic predictors with all-cause mortality.	Resting heart rate	127,919 European ancestry individuals, 2,478 Asian ancestry individuals, 1,734 Black individuals, 684 Mixed ancestry individuals, 1,436 individuals	130,795 European ancestry individuals	7q32.3	MKLN1	rs138186803-A	0.41	1E-16		0.3328	[0.25-0.41] unit decrease	Affymetrix [19941912] (imputed)	N
1584	chr7	130969770	130969771	rs10954312	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7q32.3		rs10954312-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1584	chr7	130969792	130969793	rs117911989	30327367	Jung SY	2018-10-16	Cancer Prev Res (Phila)	Genome-wide meta-analysis of gene-environmental interaction for insulin-resistance phenotypes and breast cancer risk in postmenopausal women.	Hyperglycemia in higher physical activity	4,976 European ancestry women	NA	7q32.3	MKLN1	rs117911989-?	NR	4E-8		1.98	[NR]	NR [18717781] (imputed)	N
1584	chr7	130973494	130973495	rs35680304	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	7q32.3		rs35680304-T	NR	4E-14		0.0143	[0.011-0.018] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1584	chr7	130973494	130973495	rs35680304	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	7q32.3		rs35680304-T	NR	1E-11		0.0125	[0.009-0.016] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
1584	chr7	130973494	130973495	rs35680304	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q32.3	MKLN1	rs35680304-C	0.42491	9E-9	(92 ms)	0.0322316	[0.021-0.043] unit increase	Affymetrix [10000000] (imputed)	N
1584	chr7	130973494	130973495	rs35680304	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q32.3	MKLN1	rs35680304-C	0.42491	9E-13	(148 ms)	0.0400952	[0.029-0.051] unit increase	Affymetrix [10000000] (imputed)	N
1584	chr7	130973494	130973495	rs35680304	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q32.3	MKLN1	rs35680304-C	0.42491	9E-11	(114 ms)	0.0365327	[0.025-0.048] unit increase	Affymetrix [10000000] (imputed)	N
1584	chr7	130973494	130973495	rs35680304	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q32.3	MKLN1	rs35680304-C	0.42491	8E-9	(194 ms)	0.0314861	[0.02-0.043] unit increase	Affymetrix [10000000] (imputed)	N
1584	chr7	130973494	130973495	rs35680304	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q32.3	MKLN1	rs35680304-C	0.42491	8E-13	(150 ms)	0.0404838	[0.029-0.052] unit increase	Affymetrix [10000000] (imputed)	N
1584	chr7	130973494	130973495	rs35680304	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q32.3	MKLN1	rs35680304-C	0.42491	8E-11	(116 ms)	0.0359907	[0.025-0.047] unit increase	Affymetrix [10000000] (imputed)	N
1584	chr7	130973494	130973495	rs35680304	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q32.3	MKLN1	rs35680304-C	0.42491	8E-10	(176 ms)	0.0331065	[0.022-0.044] unit increase	Affymetrix [10000000] (imputed)	N
1584	chr7	130973494	130973495	rs35680304	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q32.3	MKLN1	rs35680304-C	0.42491	8E-10	(106 ms)	0.0345232	[0.023-0.046] unit increase	Affymetrix [10000000] (imputed)	N
1584	chr7	130973494	130973495	rs35680304	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q32.3	MKLN1	rs35680304-C	0.42491	7E-14	(136 ms)	0.042939	[0.032-0.054] unit increase	Affymetrix [10000000] (imputed)	N
1584	chr7	130973494	130973495	rs35680304	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q32.3	MKLN1	rs35680304-C	0.42491	7E-13	(146 ms)	0.0402692	[0.029-0.051] unit increase	Affymetrix [10000000] (imputed)	N
1584	chr7	130973494	130973495	rs35680304	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q32.3	MKLN1	rs35680304-C	0.42491	7E-11	(100 ms)	0.0367043	[0.026-0.048] unit increase	Affymetrix [10000000] (imputed)	N
1584	chr7	130973494	130973495	rs35680304	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q32.3	MKLN1	rs35680304-C	0.42491	7E-10	(112 ms)	0.0345072	[0.023-0.046] unit increase	Affymetrix [10000000] (imputed)	N
1584	chr7	130973494	130973495	rs35680304	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q32.3	MKLN1	rs35680304-C	0.42491	6E-12	(170 ms)	0.0378482	[0.027-0.049] unit increase	Affymetrix [10000000] (imputed)	N
1584	chr7	130973494	130973495	rs35680304	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q32.3	MKLN1	rs35680304-C	0.42491	6E-11	(144 ms)	0.0379399	[0.027-0.049] unit increase	Affymetrix [10000000] (imputed)	N
1584	chr7	130973494	130973495	rs35680304	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q32.3	MKLN1	rs35680304-C	0.42491	6E-11	(132 ms)	0.0363362	[0.025-0.047] unit increase	Affymetrix [10000000] (imputed)	N
1584	chr7	130973494	130973495	rs35680304	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q32.3	MKLN1	rs35680304-C	0.42491	6E-11	(104 ms)	0.0369557	[0.026-0.048] unit increase	Affymetrix [10000000] (imputed)	N
1584	chr7	130973494	130973495	rs35680304	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q32.3	MKLN1	rs35680304-C	0.42491	5E-9	(196 ms)	0.0317925	[0.021-0.043] unit increase	Affymetrix [10000000] (imputed)	N
1584	chr7	130973494	130973495	rs35680304	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q32.3	MKLN1	rs35680304-C	0.42491	5E-13	(134 ms)	0.0401142	[0.029-0.051] unit increase	Affymetrix [10000000] (imputed)	N
1584	chr7	130973494	130973495	rs35680304	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q32.3	MKLN1	rs35680304-C	0.42491	4E-9	(200 ms)	0.0318339	[0.021-0.043] unit increase	Affymetrix [10000000] (imputed)	N
1584	chr7	130973494	130973495	rs35680304	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q32.3	MKLN1	rs35680304-C	0.42491	4E-9	(192 ms)	0.0320035	[0.021-0.043] unit increase	Affymetrix [10000000] (imputed)	N
1584	chr7	130973494	130973495	rs35680304	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q32.3	MKLN1	rs35680304-C	0.42491	4E-8	(204 ms)	0.0297171	[0.019-0.041] unit increase	Affymetrix [10000000] (imputed)	N
1584	chr7	130973494	130973495	rs35680304	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q32.3	MKLN1	rs35680304-C	0.42491	4E-14	(138 ms)	0.0426952	[0.032-0.054] unit increase	Affymetrix [10000000] (imputed)	N
1584	chr7	130973494	130973495	rs35680304	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q32.3	MKLN1	rs35680304-C	0.42491	4E-12	(156 ms)	0.0386789	[0.028-0.05] unit increase	Affymetrix [10000000] (imputed)	N
1584	chr7	130973494	130973495	rs35680304	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q32.3	MKLN1	rs35680304-C	0.42491	3E-9	(98 ms)	0.0337141	[0.023-0.045] unit increase	Affymetrix [10000000] (imputed)	N
1584	chr7	130973494	130973495	rs35680304	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q32.3	MKLN1	rs35680304-C	0.42491	3E-9	(188 ms)	0.0316527	[0.021-0.043] unit increase	Affymetrix [10000000] (imputed)	N
1584	chr7	130973494	130973495	rs35680304	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q32.3	MKLN1	rs35680304-C	0.42491	3E-13	(164 ms)	0.0410462	[0.03-0.052] unit increase	Affymetrix [10000000] (imputed)	N
1584	chr7	130973494	130973495	rs35680304	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q32.3	MKLN1	rs35680304-C	0.42491	3E-13	(154 ms)	0.041393	[0.03-0.052] unit increase	Affymetrix [10000000] (imputed)	N
1584	chr7	130973494	130973495	rs35680304	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q32.3	MKLN1	rs35680304-C	0.42491	3E-12	(168 ms)	0.0382147	[0.027-0.049] unit increase	Affymetrix [10000000] (imputed)	N
1584	chr7	130973494	130973495	rs35680304	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q32.3	MKLN1	rs35680304-C	0.42491	3E-11	(172 ms)	0.0364406	[0.025-0.048] unit increase	Affymetrix [10000000] (imputed)	N
1584	chr7	130973494	130973495	rs35680304	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q32.3	MKLN1	rs35680304-C	0.42491	3E-11	(142 ms)	0.0367985	[0.026-0.048] unit increase	Affymetrix [10000000] (imputed)	N
1584	chr7	130973494	130973495	rs35680304	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q32.3	MKLN1	rs35680304-C	0.42491	3E-11	(120 ms)	0.0373379	[0.026-0.048] unit increase	Affymetrix [10000000] (imputed)	N
1584	chr7	130973494	130973495	rs35680304	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q32.3	MKLN1	rs35680304-C	0.42491	3E-10	(128 ms)	0.0360368	[0.025-0.047] unit increase	Affymetrix [10000000] (imputed)	N
1584	chr7	130973494	130973495	rs35680304	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q32.3	MKLN1	rs35680304-C	0.42491	2E-9	(174 ms)	0.0340322	[0.023-0.045] unit increase	Affymetrix [10000000] (imputed)	N
1584	chr7	130973494	130973495	rs35680304	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q32.3	MKLN1	rs35680304-C	0.42491	2E-9	(110 ms)	0.0336798	[0.023-0.045] unit increase	Affymetrix [10000000] (imputed)	N
1584	chr7	130973494	130973495	rs35680304	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q32.3	MKLN1	rs35680304-C	0.42491	2E-8	(202 ms)	0.0306506	[0.02-0.042] unit increase	Affymetrix [10000000] (imputed)	N
1584	chr7	130973494	130973495	rs35680304	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q32.3	MKLN1	rs35680304-C	0.42491	2E-8	(190 ms)	0.0317401	[0.021-0.043] unit increase	Affymetrix [10000000] (imputed)	N
1584	chr7	130973494	130973495	rs35680304	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q32.3	MKLN1	rs35680304-C	0.42491	2E-12	(166 ms)	0.0393541	[0.028-0.05] unit increase	Affymetrix [10000000] (imputed)	N
1584	chr7	130973494	130973495	rs35680304	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q32.3	MKLN1	rs35680304-C	0.42491	2E-12	(140 ms)	0.0395184	[0.028-0.051] unit increase	Affymetrix [10000000] (imputed)	N
1584	chr7	130973494	130973495	rs35680304	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q32.3	MKLN1	rs35680304-C	0.42491	2E-11	(182 ms)	0.0365957	[0.025-0.048] unit increase	Affymetrix [10000000] (imputed)	N
1584	chr7	130973494	130973495	rs35680304	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q32.3	MKLN1	rs35680304-C	0.42491	2E-11	(158 ms)	0.0376359	[0.027-0.049] unit increase	Affymetrix [10000000] (imputed)	N
1584	chr7	130973494	130973495	rs35680304	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q32.3	MKLN1	rs35680304-C	0.42491	2E-11	(124 ms)	0.0376204	[0.027-0.049] unit increase	Affymetrix [10000000] (imputed)	N
1584	chr7	130973494	130973495	rs35680304	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q32.3	MKLN1	rs35680304-C	0.42491	2E-11	(102 ms)	0.0383145	[0.027-0.049] unit increase	Affymetrix [10000000] (imputed)	N
1584	chr7	130973494	130973495	rs35680304	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q32.3	MKLN1	rs35680304-C	0.42491	2E-10	(184 ms)	0.0343958	[0.023-0.046] unit increase	Affymetrix [10000000] (imputed)	N
1584	chr7	130973494	130973495	rs35680304	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q32.3	MKLN1	rs35680304-C	0.42491	2E-10	(130 ms)	0.0358166	[0.025-0.047] unit increase	Affymetrix [10000000] (imputed)	N
1584	chr7	130973494	130973495	rs35680304	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q32.3	MKLN1	rs35680304-C	0.42491	2E-10	(118 ms)	0.0353091	[0.024-0.046] unit increase	Affymetrix [10000000] (imputed)	N
1584	chr7	130973494	130973495	rs35680304	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q32.3	MKLN1	rs35680304-C	0.42491	1E-9	(198 ms)	0.0326546	[0.022-0.044] unit increase	Affymetrix [10000000] (imputed)	N
1584	chr7	130973494	130973495	rs35680304	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q32.3	MKLN1	rs35680304-C	0.42491	1E-9	(186 ms)	0.0328874	[0.022-0.044] unit increase	Affymetrix [10000000] (imputed)	N
1584	chr7	130973494	130973495	rs35680304	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q32.3	MKLN1	rs35680304-C	0.42491	1E-9	(108 ms)	0.0341609	[0.023-0.045] unit increase	Affymetrix [10000000] (imputed)	N
1584	chr7	130973494	130973495	rs35680304	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q32.3	MKLN1	rs35680304-C	0.42491	1E-8	(86 ms)	0.0323121	[0.021-0.043] unit increase	Affymetrix [10000000] (imputed)	N
1584	chr7	130973494	130973495	rs35680304	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q32.3	MKLN1	rs35680304-C	0.42491	1E-8	(84 ms)	0.0325485	[0.021-0.044] unit increase	Affymetrix [10000000] (imputed)	N
1584	chr7	130973494	130973495	rs35680304	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q32.3	MKLN1	rs35680304-C	0.42491	1E-13	(162 ms)	0.0419464	[0.031-0.053] unit increase	Affymetrix [10000000] (imputed)	N
1584	chr7	130973494	130973495	rs35680304	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q32.3	MKLN1	rs35680304-C	0.42491	1E-13	(152 ms)	0.0415465	[0.03-0.053] unit increase	Affymetrix [10000000] (imputed)	N
1584	chr7	130973494	130973495	rs35680304	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q32.3	MKLN1	rs35680304-C	0.42491	1E-12	(160 ms)	0.0400275	[0.029-0.051] unit increase	Affymetrix [10000000] (imputed)	N
1584	chr7	130973494	130973495	rs35680304	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q32.3	MKLN1	rs35680304-C	0.42491	1E-11	(180 ms)	0.0376047	[0.026-0.049] unit increase	Affymetrix [10000000] (imputed)	N
1584	chr7	130973494	130973495	rs35680304	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q32.3	MKLN1	rs35680304-C	0.42491	1E-11	(122 ms)	0.0389281	[0.028-0.05] unit increase	Affymetrix [10000000] (imputed)	N
1584	chr7	130973494	130973495	rs35680304	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q32.3	MKLN1	rs35680304-C	0.42491	1E-10	(178 ms)	0.0352703	[0.024-0.046] unit increase	Affymetrix [10000000] (imputed)	N
1584	chr7	130973494	130973495	rs35680304	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q32.3	MKLN1	rs35680304-C	0.42491	1E-10	(126 ms)	0.0364258	[0.025-0.047] unit increase	Affymetrix [10000000] (imputed)	N
1584	chr7	130973494	130973495	rs35680304	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	7q32.3	MKLN1	rs35680304-T	0.5777	4E-31		0.7603	[0.63-0.89] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1584	chr7	130994379	130994380	rs9719620	29146897	Pirastu N	2017-11-17	Nat Commun	GWAS for male-pattern baldness identifies 71 susceptibility loci explaining 38% of the risk.	Male-pattern baldness	25,662 British ancestry cases, 17,928 British ancestry controls	13,367 European ancestry cases, 11,851 European ancestry controls, 3,436 cases, 2,435 controls	7q32.3	intergenic	rs9719620-T	NR	3E-8		0.0779497	[0.05-0.106] unit decrease	Affymetrix [27512692] (imputed)	N
1584	chr7	130994379	130994380	rs9719620	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		7q32.3	MKLN1	rs9719620-C	NR	2E-9		0.0372316	NR unit decrease	NR [NR] (imputed)	N
1584	chr7	130996613	130996614	rs34281554	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	7q32.3	NR	rs34281554-A	0.458643	6E-48		0.0448292	[0.039-0.051] unit increase	NR [19129689] (imputed)	N
1584	chr7	130997996	130997997	rs11763660	32339537	Roberts V	2020-04-24	J Invest Dermatol	Genome wide association study identifies genetic associations with perceived age.	Youthful appearance (self-reported)	423,992 European ancestry individuals	NA	7q32.3	MKLN1	rs11763660-A	0.459765	4E-8		0.97642326	NR	Affymetrix [~ 9600000] (imputed)	N
1584	chr7	131001465	131001466	rs71578952	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (late vs. average onset voice breaking)	11,334 European ancestry late onset individuals, 172,138 European ancestry average onset individuals	NA	7q32.3		rs71578952-C	NR	5E-6		0.00365386	[0.0021-0.0052] years increase	NR [7400000] (imputed)	N
1584	chr7	131001465	131001466	rs71578952	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (late vs. average onset facial hair)	26,066 European ancestry late onset individuals, 161,175 European ancestry average onset individuals	NA	7q32.3		rs71578952-C	NR	8E-34		0.0136383	[0.011-0.016] years increase	NR [7400000] (imputed)	N
1584	chr7	131001465	131001466	rs71578952	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (early vs. average onset voice breaking)	8,245 European ancestry early onset individuals, 172,138 European ancestry average onset individuals	NA	7q32.3		rs71578952-C	NR	7E-7		0.00346002	[0.0021-0.0048] years decrease	NR [7400000] (imputed)	N
1584	chr7	131001465	131001466	rs71578952	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (early vs. average onset facial hair)	13,226 European ancestry early onset individuals, 161,175 European ancestry average onset individuals	NA	7q32.3		rs71578952-C	NR	1E-18		0.00795062	[0.0062-0.0097] years decrease	NR [7400000] (imputed)	N
1584	chr7	131001465	131001466	rs71578952	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (age at voice breaking MTAG)	205,354 European ancestry individuals	NA	7q32.3		rs71578952-C	NR	8E-28		0.035453495	[0.029-0.042] years increase	NR [7400000] (imputed)	N
1584	chr7	131008335	131008336	rs4731794	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	7q32.3		rs4731794-?	NR	6E-34				NR [~ 8900000] (imputed)	N
1584	chr7	131021098	131021099	rs7807274	23829686	Ding L	2013-07-05	Hum Genomics	Rank-based genome-wide analysis reveals the association of ryanodine receptor-2 gene variants with childhood asthma among human populations.	Asthma (childhood onset)	429 European ancestry affected offspring trios	52 African American affected offspring trios, 46 Hispanic affected offspring trios	7q32.3	MKLN1	rs7807274-?	NR	4E-6				Affymetrix [786195]	N
1584	chr7	131059055	131059056	rs13238550	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Systolic blood pressure	140,882 European ancestry individuals	190,318 European ancestry individuals	7q32.3	MKLN1	rs13238550-A	0.4	2E-12		0.331	[0.23-0.43] unit increase	Affymetrix [~ 9800000] (imputed)	N
1585	chr7	131191608	131191609	rs11770771	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	7q32.3		rs11770771-G	NR	1E-9		0.0119	[0.0082-0.0156] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
1585	chr7	131192212	131192213	rs3800684	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	7q32.3	PODXL	rs3800684-C	0.3679	3E-11		0.239	[0.17-0.31] mmHg increase	Affymetrix [NR] (imputed)	N
1585	chr7	131192474	131192475	rs3800688	28273873	Park YM	2017-03-05	Nutrients	Interaction between Single Nucleotide Polymorphism and Urinary Sodium, Potassium, and Sodium-Potassium Ratio on the Risk of Hypertension in Korean Adults.	Hypertension	8,839 Korean ancestry individuals.	NA	7q32.3	MKLN1, PODXL	rs3800688-G	0.479	4E-6		1.197		Affymetrix [1291657] (imputed)	N
1585	chr7	131192474	131192475	rs3800688	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	7q32.3	MKLN1	rs3800688-?	NR	6E-6	(isocitrate)	0.18452539	[0.1-0.26] unit increase	Affymetrix [at least 2500000] (imputed)	N
1586	chr7	131207826	131207827	rs13308125	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	7q32.3	PODXL	rs13308125-T	0.3345	2E-9		0.1827	[0.12-0.24] mmHg decrease	Affymetrix [NR] (imputed)	N
1586	chr7	131219336	131219337	rs13245368	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		PODXL	rs13245368-?	NR	3E-11	(female)	2.36655	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1586	chr7	131269045	131269046	rs115136484	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	7q32.3	NR	rs115136484-C	0.079016	1E-11		0.023697	[0.017-0.031] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1586	chr7	131287989	131287990	rs12534221	20932310	Han MR	2010-10-08	BMC Neurol	Genome-wide association reveals genetic effects on human A?42 and ? protein levels in cerebrospinal fluids: a case control study.	Cerebrospinal fluid AB1-42 levels	172 European ancestry Alzheimer's disease cases, 109 European ancestry mild cognitive impairment cases, 109 European ancestry controls	NA	7q32.3	intergenic	rs12534221-A	NR	9E-7	(Controls)			Illumina [498205]	N
1586	chr7	131321009	131321010	rs75672964	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental extreme longevity (95 years and older)	1,339 middle-aged British cases, 40,934 middle-aged British controls	NA	7q32.3	NR	rs75672964-?	NR	1E-6		0.01042	[0.0062-0.0147] unit decrease	Affymetrix [9658292] (imputed)	N
1586	chr7	131323709	131323710	rs75511781	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	7q32.3	PODXL	rs75511781-G	0.0433375	4E-8		0.08111588	[0.052-0.11] unit increase	Affymetrix [7288503] (imputed)	N
1586	chr7	131323709	131323710	rs75511781	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	7q32.3		rs75511781-?	NR	3E-11				NR [~ 8900000] (imputed)	N
1586	chr7	131334000	131334001	rs2909678	27151647	Chen G	2016-05-05	Addict Biol	An association study revealed substantial effects of dominance, epistasis and substance dependence co-morbidity on alcohol dependence symptom count.	Alcohol dependence symptom count	2,605 European ancestry individuals, 1,233 African American individuals	NA	7q32.3	PODXL	rs2909678-?		1E-8	(additive)	0.255	[0.17-0.34] unit decrease	Illumina [974863]	N
1587	chr7	131361318	131361319	rs6957161	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	7q32.3	PODXL, PLXNA4	rs6957161-A		5E-6	(EA)	0.314	unit increase	Affymetrix [at least 2696785] (imputed)	N
1587	chr7	131361318	131361319	rs6957161	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	7q32.3	PODXL, PLXNA4	rs6957161-A		2E-6		0.29	unit increase	Affymetrix [at least 2696785] (imputed)	N
1587	chr7	131361318	131361319	rs6957161	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	7q32.3	PODXL, PLXNA4	rs6957161-A		2E-9		0.256	unit increase	Affymetrix [at least 2696785] (imputed)	N
1587	chr7	131361318	131361319	rs6957161	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	7q32.3	PODXL, PLXNA4	rs6957161-A		2E-9		0.157	unit increase	Affymetrix [at least 2696785] (imputed)	N
1587	chr7	131370038	131370039	rs11761231	17554300	Wellcome Trust Case Control Consortium	2007-06-07	Nature	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Rheumatoid arthritis	1,860 European ancestry cases, 2,938 European ancestry controls	NA	7q32.3	intergenic	rs11761231-G	0.62	4E-7	(sex-differentiated)	1.44	[1.19-1.75]	Affymetrix [469557]	N
1587	chr7	131453524	131453525	rs1106683	17903300	Fox CS	2007-09-19	BMC Med Genet	Genome-wide association to body mass index and waist circumference: the Framingham Heart Study 100K project.	Body mass index	1,341 European ancestry individuals from 310 families	NA	7q32.3	intergenic	rs1106683-?	NR	1E-7				Affymetrix [70897]	N
1587	chr7	131453664	131453665	rs1106684	17903300	Fox CS	2007-09-19	BMC Med Genet	Genome-wide association to body mass index and waist circumference: the Framingham Heart Study 100K project.	Body mass index	1,341 European ancestry individuals from 310 families	NA	7q32.3	intergenic	rs1106684-?	NR	2E-6				Affymetrix [70897]	N
1588	chr7	131550502	131550503	rs62468101	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	7q32.3	MKLN1, PLXNA4	rs62468101-?		1E-11				Affymetrix, Illumina [NR] (imputed)	N
1588	chr7	131565549	131565550	rs11765910	29495422	Xu H	2018-02-26	J Pers Med	A Genome-Wide Association Study of Idiopathic Dilated Cardiomyopathy in African Americans.	Idiopathic dilated cardiomyopathy	662 African American cases, 1,138 African American controls	NA	7q32.3	PODXL, LOC101928782	rs11765910-T	0.126	3E-6		1.28	[1.06-1.55]	Affymetrix [up to 27494467] (imputed)	N
1588	chr7	131567262	131567263	rs7801375	31268507	Periyasamy S	2019-07-03	JAMA Psychiatry	Association of Schizophrenia Risk With Disordered Niacin Metabolism in an Indian Genome-wide Association Study.	Schizophrenia	816 Indian ancestry cases, 900 Indian ancestry controls, 505 Indian ancestry cases and 871 Indian ancestry controls from 405 families, up to 36,989 European and unknown ancestry cases, up to 113,075 European and unknown ancestry controls	NA	7q32.3	NR	rs7801375-?	NR	6E-8				Illumina [up to 5582932] (imputed)	N
1588	chr7	131567262	131567263	rs7801375	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	7q32.3	LOC10013070	rs7801375-G	NR	3E-8	(EA)	1.087	[1.06-1.12]	Illumina [6627481] (imputed)	N
1588	chr7	131567262	131567263	rs7801375	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	7q32.3	LOC10013070	rs7801375-G	NR	3E-8		1.0822511	[1.05-1.11]	Illumina [6627481] (imputed)	N
1588	chr7	131567262	131567263	rs7801375	29483656	Pardinas AF	2018-02-26	Nat Genet	Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.	Schizophrenia	40,675 European ancestry cases, 64,643 European ancestry controls	1,651 European ancestry cases, 4,111 cases, 142,717 European ancestry controls, 11,507 controls	7q32.3	LOC101928782	rs7801375-?	NR	6E-9		1.0799136	[1.05-1.11]	Illumina [8000000] (imputed)	N
1588	chr7	131567262	131567263	rs7801375	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	7q32.3	intergenic	rs7801375-G	NR	6E-8		1.0799136	[1.05-1.11]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1588	chr7	131567262	131567263	rs7801375	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	7q32.3	LOC101928782	rs7801375-?		3E-10		1.0869565	[1.06-1.12]	Affymetrix, Illumina [NR]	N
1588	chr7	131567262	131567263	rs7801375	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	7q32.3	NR	rs7801375-G	NR	9E-9		1.0869565	[NR]	Illumina [7158791] (imputed)	N
1588	chr7	131567262	131567263	rs7801375	25056061	Ripke S	2014-07-22	Nature	Biological insights from 108 schizophrenia-associated genetic loci.	Schizophrenia	32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	1,513 European ancestry cases, 66,236 European ancestry controls	7q32.3	PODXL	rs7801375-G	0.848	4E-8		1.0822511	[1.05-1.11]	Affymetrix, Illumina [9005918] (imputed)	N
1588	chr7	131574607	131574608	rs12667919	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	7q32.3	NR	rs12667919-C	0.7087	4E-8		0.0256	[0.016-0.035] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1589	chr7	131619846	131619847	rs1593304	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	7q32.3	NR	rs1593304-A	NR	2E-8		0.01679	[0.011-0.023] unit decrease	Affymetrix [10847151] (imputed)	N
1589	chr7	131621999	131622000	rs4637759	28247064	Deming Y	2017-02-28	Acta Neuropathol	Genome-wide association study identifies four novel loci associated with Alzheimer's endophenotypes and disease modifiers.	Cerebrospinal T-tau levels	3,146 individuals	NA	7q32.3	LOC101928782	rs4637759-A	0.023	9E-6		0.092	[0.051-0.133] unit decrease	Illumina [7358575] (imputed)	N
1589	chr7	131647413	131647414	rs726284	34224794	Wang K	2021-07-02	Prog Neuropsychopharmacol Biol Psychiatry	Genome-wide association study identified INSC gene associated with Trail Making Test Part A and Alzheimer's disease related cognitive phenotypes.	Global cognition (Clinical Dementia Rating Scale Sum of Boxes)	684 European ancestry individuals, 17 Hispanic individuals, 36 African American individuals, 18 individuals	NA	7q32.3		rs726284-A	NR	4E-6		0.5097	[0.3-0.72] unit increase	NR [534934]	N
1589	chr7	131683979	131683980	rs67675375	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Chronic sinus infection	5,291 European ancestry cases, 79,622 European ancestry controls	NA	7q32.3	NR	rs67675375-?	NR	4E-6		0.1671	[0.095-0.239] unit increase	Illumina [at least 560000] (imputed)	N
1589	chr7	131713359	131713360	rs17166082	23593239	van der Loos MJ	2013-04-04	PLoS One	The molecular genetic architecture of self-employment.	Self-employment	7,734 European ancestry cases, 42,893 European ancestry controls	737 cases, 2,534 controls	7q32.3	PLXNA4	rs17166082-A	0.06	9E-6				Affymetrix, Illumina [~ 2400000] (imputed)	N
1590	chr7	131772614	131772615	rs35417231	32742401	Parviainen R	2020-06-12	Exp Ther Med	A single genetic locus associated with pediatric fractures: A genome-wide association study on 3,230 patients.	Fractures (paediatric)	48 European ancestry cases, 3,182 European ancestry controls	NA	7q32.3	PLXNA4	rs35417231-T	0.0703	1E-6		1.988	[1.18-2.8] unit increase	Illumina [3515000] (imputed)	N
1590	chr7	131796547	131796548	rs7793511	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Choroid plexus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	7q32.3	NR	rs7793511-?		8E-6				Illumina [4322238] (imputed)	N
1590	chr7	131815342	131815343	rs10954361	24684796	Cox AJ	2014-03-11	Neurobiol Aging	Heritability and genetic association analysis of cognition in the Diabetes Heart Study.	Cognitive function	423 type 2 diabetes cases and 127 unaffected siblings from 257 families	NA	7q32.3	PLXNA4	rs10954361-G	0.2143	7E-6	(Phonemic Fluency)	3.6994	[2.10-5.30] unit increase	Affymetrix [> 371951] (imputed)	N
1590	chr7	131818096	131818097	rs182006024	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	7q32.3	NR	rs182006024-?	NR	4E-6	(EA)	0.6284	[0.36-0.89] unit increase	Illumina [up to 11892802] (imputed)	N
1590	chr7	131819282	131819283	rs2341557	29603369	Naito T	2018-03-30	J Gastroenterol Hepatol	Clinical and genetic risk factors for decreased bone mineral density in Japanese patients with inflammatory bowel disease.	Bone mineral density (femoral neck) in inflammatory bowel disease	254 Japanese ancestry cases	NA	7q32.3	PLXNA4	rs2341557-T	NR	1E-6		0.5282	[NR] unit decrease	Affymetrix [4384682] (imputed)	N
1590	chr7	131829127	131829128	rs1399090	22566634	Benjamin DJ	2012-05-07	Proc Natl Acad Sci U S A	The genetic architecture of economic and political preferences.	Economic and political preferences	9,617 European ancestry individuals	NA	7q32.3	PLXNA4	rs1399090-T	NR	7E-6	(Foreign Policy)	0.216	[0.12-0.31] unit decrease	Illumina [628922]	N
1590	chr7	131852271	131852272	rs117985931	33017352	Kim SK	2020-10-01	Med Sci Sports Exerc	A Genome-wide Association Study for Concussion Risk.	Concussion	4,064 European ancestry cases, 291,472 European ancestry controls	NA	7q32.3	PLXNA4	rs117985931-G	0.0013	4E-9		3.59	NR	Affymetrix [7743986] (imputed)	N
1590	chr7	131853600	131853601	rs12386622	24204828	Zheng JS	2013-10-28	PLoS One	Genome-wide contribution of genotype by environment interaction to variation of diabetes-related traits.	Homeostasis model assessment of beta-cell function (dietary factor interaction)	820 European ancestry individuals	NA	7q32.3	PLXNA4	rs12386622-A	0.162	3E-6	(n-6 PUFA)			Affymetrix [590000]	N
1591	chr7	131870596	131870597	rs6946056	34002096	Mullins N	2021-05-17	Nat Genet	Genome-wide association study of more than 40,000 bipolar disorder cases provides new insights into the underlying biology.	Bipolar disorder	41,917 European ancestry cases, 371,549 European ancestry controls	NA	7q32.3	PLXNA4	rs6946056-A	0.377	4E-8		0.94819	[0.93-0.97]	Affymetrix, Illumina [7549318] (imputed)	N
1591	chr7	131893484	131893485	rs62468398	24939585	Fransen E	2014-06-18	Eur J Hum Genet	Genome-wide association analysis demonstrates the highly polygenic character of age-related hearing impairment.	Age-related hearing impairment	1,489 European ancestry individuals	NA	7q32.3	PLXNA4	rs62468398-?		8E-6	(PC2)	0.1634	[NR] unit decrease	Illumina [4167292] (imputed)	N
1591	chr7	131906295	131906296	rs77269753	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	7q32.3	NR	rs77269753-?	NR	4E-10				Illumina [7760689] (imputed)	N
1591	chr7	131907547	131907548	rs1349405	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	7q32.3	NR	rs1349405-A	0.35	1E-8		0.00792449	[0.0052-0.0106] unit decrease	NR [~ 9732723] (imputed)	N
1591	chr7	131947816	131947817	rs7776974	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	7q32.3	Intergenic	rs7776974-A	0.4164	5E-13	(MTAG)	0.0131	[0.0096-0.0166] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1591	chr7	131947816	131947817	rs7776974	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	7q32.3	Intergenic	rs7776974-G	0.5836	4E-10		0.0124	[0.0085-0.0163] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1591	chr7	131947816	131947817	rs7776974	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	7q32.3	Intergenic	rs7776974-A	0.4166	8E-13	(MTAG)	0.012	[0.0087-0.0153] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1591	chr7	131947816	131947817	rs7776974	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	7q32.3	Intergenic	rs7776974-A	0.4289	7E-10	(MTAG)	0.0143	[0.0098-0.0188] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1591	chr7	131961028	131961029	rs1026196	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	7q32.3	Intergenic	rs1026196-T	0.179	3E-9	(MTAG)	0.0102	[0.0069-0.0135] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1592	chr7	132024664	132024665	rs56289193	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	7q32.3	PLXintergenic4	rs56289193-G	NR	4E-6	(AA)			Illumina [up to 11995908] (imputed)	N
1592	chr7	132032494	132032495	rs6959579	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	7q32.3		rs6959579-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1592	chr7	132040532	132040533	rs66792854	33987465	Alfradique-Dunham I	2021-01-28	Neurol Genet	Genome-Wide Association Study Meta-Analysis for Parkinson Disease Motor Subtypes.	Parkinson's disease motor subtype (tremor to postural instability/gait difficulty score ratio)	3,212 European ancestry individuals	NA	7q32.3	PLXNA4	rs66792854-A	0.06	1E-5		0.25	[0.13-0.37] unit increase	Illumina [14638245] (imputed)	N
1592	chr7	132056247	132056248	rs78060357	26503814	Hardin M	2016-10-27	Pharmacogenomics J	A genome-wide analysis of the response to inhaled ?2-agonists in chronic obstructive pulmonary disease.	Response to bronchodilator in chronic obstructive pulmonary disease (change in FEV1)	5,766 European ancestry cases, 811 African American cases	NA	7q32.3	PLXNA4	rs78060357-A	0.9	8E-8	(BDRABS, AA)	0.08	[0.041-0.119] unit increase	Illumina [NR] (imputed)	N
1592	chr7	132056247	132056248	rs78060357	26503814	Hardin M	2016-10-27	Pharmacogenomics J	A genome-wide analysis of the response to inhaled ?2-agonists in chronic obstructive pulmonary disease.	Response to bronchodilator in chronic obstructive pulmonary disease (change in FEV1)	5,766 European ancestry cases, 811 African American cases	NA	7q32.3	PLXNA4	rs78060357-A	0.9	5E-7	(BDRPRED, AA)	2.88	[1.76-4] unit increase	Illumina [NR] (imputed)	N
1592	chr7	132061820	132061821	rs73158817	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	7q32.3	NR	rs73158817-T	0.0429	1E-8		0.0172721	[0.011-0.023] unit decrease	NR [9732723] (imputed)	N
1592	chr7	132113186	132113187	rs277472	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	7q32.3	CHCHD3	rs277472-?	NR	2E-6	(aconitate)	0.8628303	[0.51-1.22] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1593	chr7	132189688	132189689	rs10808265	22424883	Imboden M	2012-03-15	J Allergy Clin Immunol	Genome-wide association study of lung function decline in adults with and without asthma.	Pulmonary function decline	1,441 European ancestry asthma cases, 2,677 European ancestry controls	1,160 European ancestry asthma cases, 10,858 European ancestry controls	7q32.3	PLXNA4B	rs10808265-?	NR	2E-6	(FEV1 decline in asthmatics)	0.1746	[0.10-0.25] unit decrease	Illumina [~ 2500000] (imputed)	N
1593	chr7	132230501	132230502	rs73446845	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		PLXNA4	rs73446845-?	NR	5E-9	(male)	3.34276	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1593	chr7	132234761	132234762	rs75461412	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7q32.3	NR	rs75461412-A	0.0122	6E-9	(AGT)	0.07267	NR unit increase	Illumina [1671387] (imputed)	N
1593	chr7	132234761	132234762	rs75461412	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7q32.3	NR	rs75461412-A	0.0122	3E-8	(MLYCD)	0.01188	NR unit increase	Illumina [1671387] (imputed)	N
1594	chr7	132253887	132253888	rs9649579	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	7q32.3		rs9649579-T	0.422	1E-9		0.007	[0.005-0.009] unit decrease	NR [NR] (imputed)	N
1594	chr7	132294311	132294312	rs62465218	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	7q32.3	PLXNA4, CHCHD3	rs62465218-C	0.8544	1E-8		1.0277789		Affymetrix [11880941] (imputed)	N
1594	chr7	132302247	132302248	rs11771982	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	7q32.3	CHCHD3	rs11771982-T	0.1541	5E-9		0.01631134	[0.011-0.022] unit decrease	Affymetrix [11514654] (imputed)	N
1594	chr7	132304932	132304933	rs12707049	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	7q32.3	NR	rs12707049-G	0.495	2E-9		0.00645316	[0.0043-0.0086] unit increase	NR [9732723] (imputed)	N
1594	chr7	132309591	132309592	rs6957896	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	7q32.3		rs6957896-C	0.503	5E-8		0.011	[0.0071-0.0149] unit decrease	Affymetrix [up to 90000000] (imputed)	N
1594	chr7	132323811	132323812	rs12707051	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		PLXNA4	rs12707051-?	NR	6E-12		2.58793	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1594	chr7	132325308	132325309	rs4731889	23362303	Wu JH	2013-01-29	Circ Cardiovasc Genet	Genome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortium.	Oleic acid (18:1n-9) levels	8,961 European ancestry individuals		7q32.3	PLXNA4	rs4731889-A	NR	5E-6		0.0856	unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1594	chr7	132349932	132349933	rs59616049	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	7q32.3		rs59616049-T	0.21	3E-10		6.32	z score increase	Affymetrix [9061022] (imputed)	N
1595	chr7	132407740	132407741	rs504719	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	7q32.3	Intergenic	rs504719-T	0.6085	5E-8	(MTAG)	0.0128	[0.0083-0.0173] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1595	chr7	132505657	132505658	rs4731898	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	7q32.3	NR	rs4731898-?		2E-6	(TNFRSF11B)	0.1644	[NR] unit increase	Illumina [NR]	N
1596	chr7	132525146	132525147	rs6467447	31409800	Pazoki R	2019-08-13	Nat Commun	GWAS for urinary sodium and potassium excretion highlights pathways shared with cardiovascular traits.	Urinary potassium excretion	446,230 European ancestry individuals	7,612 African ancestry individuals, 10,095 South Asian ancestry individuals	7q32.3	CHCHD3	rs6467447-C	0.37173	7E-9	(EA)	0.00720042	[0.0048-0.0096] unit increase	Affymetrix [~ 8800000] (imputed)	N
1596	chr7	132526349	132526350	rs4731907	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	7q32.3		rs4731907-C	NR	2E-12		0.009	[0.0065-0.0115] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1596	chr7	132526349	132526350	rs4731907	29782485	Rueger S	2018-05-21	PLoS Genet	Evaluation and application of summary statistic imputation to discover new height-associated loci.	Height	253,288 European ancestry individuals	336,474 European ancestry individuals	7q32.3	NR	rs4731907-C	0.432954244908754	6E-6				NR [9276018] (imputed)	N
1596	chr7	132593830	132593831	rs77283305	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	7q33	NR	rs77283305-A	0.305819	4E-8	(Conditioned on chr7:133840652, chr7:133589846)	0.015195972	[0.0098-0.0206] unit decrease	NR [~ 10000000] (imputed)	N
1596	chr7	132599985	132599986	rs4731919	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	7q33	NR	rs4731919-A	0.695	9E-10		0.00968711	[0.0066-0.0128] unit decrease	NR [9732723] (imputed)	N
1596	chr7	132610265	132610266	rs7806045	30846698	Dashti HS	2019-03-07	Nat Commun	Genome-wide association study identifies genetic loci for self-reported habitual sleep duration supported by accelerometer-derived estimates.	Sleep duration	446,118 European ancestry individuals	47,180  adults, 10,554 children or adolescents	7q33	NR	rs7806045-T	NR	1E-9		0.894	unit increase	Affymetrix [14661600] (imputed)	N
1597	chr7	132660488	132660489	rs7799141	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	7q33		rs7799141-A	0.3104	5E-11		0.0099	[0.007-0.0128] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1597	chr7	132660488	132660489	rs7799141	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	7q33	Intergenic	rs7799141-A	0.3104	6E-13	(MTAG)	0.0102	[0.0075-0.0129] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1597	chr7	132664756	132664757	rs4731925	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	7q33		rs4731925-C	0.316	3E-8		0.012	[0.0081-0.0159] unit decrease	Affymetrix [up to 90000000] (imputed)	N
1597	chr7	132672191	132672192	rs6967168	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	7q33	NR	rs6967168-G	0.2456	1E-10		1.0449321	[1.03-1.06]	Affymetrix, Illumina [NR] (imputed)	N
1597	chr7	132675365	132675366	rs1421304	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	7q33	Intergenic	rs1421304-T	0.6774	4E-10	(MTAG)	0.0153	[0.011-0.02] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1597	chr7	132690683	132690684	rs13233438	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	7q33		rs13233438-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1597	chr7	132699294	132699295	rs2111816	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	7q33	NR	rs2111816-G	0.691	4E-10		0.00732268	[0.005-0.0096] unit increase	NR [9732723] (imputed)	N
1598	chr7	132789777	132789778	rs11768845	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	7q33	Intergenic	rs11768845-T	0.6323	8E-10	(MTAG)	0.0105	[0.0072-0.0138] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1598	chr7	132796322	132796323	rs17424324	28820441	Veenstra J	2017-08-19	Nutrients	Genome-Wide Interaction Study of Omega-3 PUFAs and Other Fatty Acids on Inflammatory Biomarkers of Cardiovascular Health in the Framingham Heart Study.	Intercellular adhesion molecule 1 (red blood cell fatty acid level interaction)	2,703 individuals	NA	7q33	CHCHD3, LOC105375512	rs17424324-?	0.115717954	1E-8	(DPA_N6)	0.29533502	[0.19-0.4] unit decrease	Affymetrix [2500000] (imputed)	N
1598	chr7	132797011	132797012	rs11981179	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	7q33	Intergenic	rs11981179-A	0.65	4E-8	(MTAG)	0.0103	[0.0066-0.014] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1598	chr7	132804433	132804434	rs12707083	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7q33		rs12707083-?	NR	4E-10				NR [~ 8900000] (imputed)	N
1598	chr7	132825877	132825878	rs11980115	30898391	Lawrenson K	2019-03-19	Gynecol Oncol	Genome-wide association studies identify susceptibility loci for epithelial ovarian cancer in east Asian women.	Epithelial ovarian cancer	3,238 East Asian ancestry cases, 4,083 East Asian ancestry controls	NA	7q33		rs11980115-?	NR	2E-6	(ser_lg_lmp)	4.45		Illumina [11595112] (imputed)	N
1598	chr7	132832217	132832218	rs78048444	29030101	Asai Y	2017-10-10	J Allergy Clin Immunol	Genome-wide association study and meta-analysis in multiple populations identifies new loci for peanut allergy and establishes C11orf30/EMSY as a genetic risk factor for food allergy.	Peanut allergy	1,068 European ancestry cases, 3,327 European ancestry controls, 514 cases, 2,119 controls	NA	7q33	CHCHD3, EXOC4	rs78048444-?		4E-7				Illumina [7830195] (imputed)	N
1598	chr7	132832217	132832218	rs78048444	29030101	Asai Y	2017-10-10	J Allergy Clin Immunol	Genome-wide association study and meta-analysis in multiple populations identifies new loci for peanut allergy and establishes C11orf30/EMSY as a genetic risk factor for food allergy.	Food allergy	1,170 European ancestry cases, 3,336 European ancestry controls, up to 6,098 cases, up to 25,748 controls	NA	7q33	CHCHD3, EXOC4	rs78048444-?	NR	3E-6	(excluding GERA cohort)			Illumina [7830195] (imputed)	N
1598	chr7	132838970	132838971	rs35930927	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	7q33	Intergenic	rs35930927-C	0.7665	2E-12		0.0188	[0.014-0.024] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1598	chr7	132840651	132840652	rs78926499	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Citrobacter A abundance in stool	5,959 Finnish ancestry individuals	NA	7q33		rs78926499-T	0.0103553	5E-8		0.192439	[0.12-0.26] unit increase	Illumina [7980478] (imputed)	N
1598	chr7	132855270	132855271	rs186074592	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	7q33	Intergenic	rs186074592-T	1.0	4E-6	(AA)	0.784	unit increase	Illumina [NR] (imputed)	N
1598	chr7	132886051	132886052	rs28375034	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	7q33	NR	rs28375034-G	NR	9E-7		1.0752687	[NR]	Illumina [7158791] (imputed)	N
1598	chr7	132902014	132902015	rs2344701	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	7q33	EXOC4	rs2344701-A	NR	5E-8		0.016735667	[0.011-0.023] unit increase	Affymetrix [NR]	N
1599	chr7	132915123	132915124	rs13235319	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	7q33	Intergenic	rs13235319-A	0.3168	2E-8	(MTAG)	0.0139	[0.009-0.0188] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1599	chr7	132918344	132918345	rs6467482	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	7q33	NR	rs6467482-A	NR	2E-9		6.03	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1599	chr7	132924777	132924778	rs75334297	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	7q33	Intergenic	rs75334297-A	0.0525	5E-9	(MTAG)	0.0235	[0.016-0.031] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1599	chr7	132924777	132924778	rs75334297	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	7q33	Intergenic	rs75334297-A	0.0524	5E-9	(MTAG)	0.0219	[0.015-0.029] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1599	chr7	132927791	132927792	rs7802313	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	7q33	EXOC4	rs7802313-T	NR	2E-8		5.597	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1599	chr7	132927791	132927792	rs7802313	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	7q33	EXOC4	rs7802313-T	NR	6E-9		0.018017631	[0.012-0.024] unit decrease	Affymetrix [NR]	N
1599	chr7	132929803	132929804	rs35792732	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	7q33	NR	rs35792732-T	NR	3E-8		5.536	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1599	chr7	132929803	132929804	rs35792732	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	7q33	EXOC4	rs35792732-T	NR	5E-8		5.463	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1599	chr7	132937916	132937917	rs73436933	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7q33	NR	rs73436933-T	0.01045	6E-10	(NIPSNAP1)	0.4372	NR unit increase	Illumina [1671387] (imputed)	N
1599	chr7	132945753	132945754	rs10215367	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	7q33	EXOC4	rs10215367-T	NR	2E-10		0.019046552	[0.013-0.025] unit increase	Affymetrix [NR]	N
1599	chr7	132948883	132948884	rs35284403	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	7q33	NR	rs35284403-T	NR	1E-8		5.692	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1599	chr7	132954532	132954533	rs12707087	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	7q33	EXOC4	rs12707087-T	NR	2E-9		0.022929119	[0.015-0.03] unit decrease	Affymetrix [NR]	N
1599	chr7	132961737	132961738	rs1882538	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	7q33	EXOC4	rs1882538-A	NR	1E-11		0.0211912	[0.015-0.027] unit increase	Affymetrix [NR]	N
1599	chr7	132966298	132966299	rs13242614	29678681	Matana A	2018-04-18	Genomics	Genome-wide meta-analysis identifies novel gender specific loci associated with thyroid antibodies level in Croatians.	Plasma anti-thyroid peroxidase levels	1,593 Croatian ancestry women, 1,025 Croatian ancestry men	NA	7q33	EXOC4	rs13242614-T	NR	2E-6	(women)	0.356	[0.21-0.5] unit decrease	Illumina [5527232] (imputed)	N
1599	chr7	132970673	132970674	rs11977339	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	7q33	EXOC4	rs11977339-T	NR	1E-9		6.055	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1600	chr7	133047755	133047756	rs1149558	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	7q33	Intergenic	rs1149558-T	0.6032	6E-9		0.0135	[0.009-0.018] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1600	chr7	133054711	133054712	rs6950324	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	7q33	EXOC4	rs6950324-T	NR	2E-8		5.661	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1600	chr7	133055081	133055082	rs1149557	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	7q33	NR	rs1149557-C	0.385686	2E-11		0.043276563	[0.031-0.056] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1600	chr7	133055602	133055603	rs6973256	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	7q33	NR	rs6973256-T	NR	9E-13		7.145	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1600	chr7	133055602	133055603	rs6973256	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	7q33	EXOC4	rs6973256-T	NR	1E-10		0.01915792	[0.013-0.025] unit increase	Affymetrix [NR]	N
1600	chr7	133066018	133066018	rs79672741	33563987	Tyrrell J	2021-02-09	Nat Commun	Genetic predictors of participation in optional components of UK Biobank.	Participation in an health questionnaire (not invited vs invited)	336,633 European ancestry cases, 114,464 European ancestry controls	NA	7q33	NR	rs79672741-G	0.193823	5E-11		1.008	[1.005, 1.010]	Affymetrix [39302896] (imputed)	N
1600	chr7	133069681	133069682	rs11765450	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	7q33	EXOC4	rs11765450-T	NR	4E-10		0.023339247	[0.016-0.031] unit decrease	Affymetrix [NR]	N
1600	chr7	133081469	133081470	rs6949831	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	7q33	NR	rs6949831-C	NR	9E-10		6.133	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1600	chr7	133081809	133081810	rs10281827	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	7q33	EXOC4	rs10281827-A	NR	3E-8		5.519	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1600	chr7	133088038	133088039	rs6978272	30034349	Lin E	2018-07-06	Front Psychiatry	A Deep Learning Approach for Predicting Antidepressant Response in Major Depression Using Clinical and Genetic Biomarkers.	Response to selective serotonin reuptake inhibitors in depression	257 Taiwanese ancestry responders, 164 Taiwanese ancestry non-responders	NA	7q33	EXOC4	rs6978272-?	NR	7E-6		3.448276	[2-5.88]	Illumina [4241701] (imputed)	N
1600	chr7	133092277	133092278	rs6951416	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	7q33	Intergenic	rs6951416-A	0.6544	7E-9	(MTAG)	0.008	[0.0053-0.0107] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1600	chr7	133130177	133130178	rs6956293	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	7q33	Intergenic	rs6956293-T	0.772	6E-9		0.0197	[0.013-0.026] unit increase	Affymetrix, Illumina [10100000] (imputed)	N
1600	chr7	133135205	133135206	rs7788086	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fruit consumption	335,576 European ancestry individuals	NA	7q33	EXOC4	rs7788086-?	NR	3E-8		0.0146284	[0.0095-0.0198] unit increase	Affymetrix [25921788] (imputed)	N
1600	chr7	133149820	133149821	rs1038630	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	7q33	EXOC4	rs1038630-G	0.1903	4E-10		0.015974015	[0.011-0.021] unit increase	Affymetrix [up to 18485882] (imputed)	N
1600	chr7	133152998	133152999	rs17597230	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	7q33	Intergenic	rs17597230-G	0.9825	3E-8		0.0413	[0.027-0.056] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1600	chr7	133154425	133154426	rs1424580	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	7q33		rs1424580-T	0.8004	4E-8		40.211506	z score increase	NR [6814003]	N
1600	chr7	133158352	133158353	rs10254118	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	7q33	EXOC4	rs10254118-A	NR	3E-11		0.02070377	[0.015-0.027] unit increase	Affymetrix [NR]	N
1601	chr7	133179239	133179240	rs6975094	29213071	Mendez-Giraldez R	2017-12-06	Sci Rep	GWAS of the electrocardiographic QT interval in Hispanics/Latinos generalizes previously identified loci and identifies population-specific signals.	QT interval	15,997 Hispanic/Latino individuals	NA	7q33	EXOC4	rs6975094-A	0.99	5E-7		9.99	[6.11-13.87] ms decrease	Affymetrix, Illumina [up to 17586686] (imputed)	N
1601	chr7	133189119	133189120	rs147175877	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	7q33	Intergenic	rs147175877-?		6E-6		1.1	[1.05-1.14]	Illumina [7645193] (imputed)	N
1601	chr7	133189119	133189120	rs147175877	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	7q33	Intergenic	rs147175877-?		3E-6		2.66	[1.77-4.02]	Illumina [7645193] (imputed)	N
1601	chr7	133200816	133200817	rs12707093	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	7q33	NR	rs12707093-?	NR	5E-8		5.45	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1601	chr7	133244148	133244149	rs2345667	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	7q33	NR	rs2345667-G	0.2	3E-12		0.0126869	[0.0091-0.0163] unit decrease	NR [9732723] (imputed)	N
1601	chr7	133295062	133295063	rs149142052	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	7q33	NR	rs149142052-?	NR	2E-8				Illumina [7760689] (imputed)	N
1602	chr7	133302344	133302345	rs17167170	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	7q33	NR	rs17167170-?	NR	1E-7		5.281	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1602	chr7	133302344	133302345	rs17167170	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	7q33	NR	rs17167170-A	0.7972	2E-12		0.01948004	NR unit increase	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
1602	chr7	133304693	133304694	rs57352738	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	7q33	Intergenic	rs57352738-A	0.2008	1E-30	(MTAG)	0.0237	[0.02-0.028] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1602	chr7	133304693	133304694	rs57352738	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	7q33		rs57352738-A	0.204	3E-18		0.0152	[0.012-0.019] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1602	chr7	133304693	133304694	rs57352738	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	7q33	Intergenic	rs57352738-A	0.204	2E-27	(MTAG)	0.0177	[0.015-0.021] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1602	chr7	133304693	133304694	rs57352738	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	7q33	Intergenic	rs57352738-A	0.2068	4E-21	(MTAG)	0.0267	[0.021-0.032] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1602	chr7	133335175	133335176	rs10488172	17903302	Levy D	2007-09-19	BMC Med Genet	Framingham Heart Study 100K Project: genome-wide associations for blood pressure and arterial stiffness.	Tonometry	644 individuals	NA	7q33	EXOC4	rs10488172-?	NR	8E-6	(RWLTA)			Affymetrix [70897]	N
1602	chr7	133337634	133337635	rs2345941	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (computer use)	408,815 European ancestry individuals	NA	7q33	NR	rs2345941-?		4E-11		0.014647	[0.01-0.019] unit increase	Affymetrix [19400418] (imputed)	N
1602	chr7	133339342	133339343	rs17167210	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	7q33	EXOC4	rs17167210-A	NR	2E-14		0.02312524	[0.017-0.029] unit decrease	Affymetrix [NR]	N
1602	chr7	133341161	133341162	rs2483509	31168069	Ward J	2019-06-05	Mol Psychiatry	The genomic basis of mood instability: identification of 46 loci in 363,705 UK Biobank participants, genetic correlation with psychiatric disorders, and association with gene expression and function.	Mood instability	157,039 European ancestry cases, 206,666 European ancestry controls	NA	7q33	EXOC4	rs2483509-?	NR	2E-8		0.00646194	[0.0042-0.0087] unit decrease	Affymetrix [NR] (imputed)	N
1602	chr7	133343352	133343353	rs763646	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Executive function (trail making test B)	78,547 British ancestry individuals	NA	7q33		rs763646-?	NR	1E-10				NR [7857346] (imputed)	N
1602	chr7	133388055	133388056	rs10954428	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA		NR	rs10954428-A	NR	9E-11		6.476	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1602	chr7	133417537	133417538	rs149996974	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	7q33	Intergenic	rs149996974-?		3E-6		1.14	[1.08-1.21]	Illumina [7645193] (imputed)	N
1602	chr7	133417537	133417538	rs149996974	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	7q33	Intergenic	rs149996974-?		1E-6		3.79	[2.21-6.51]	Illumina [7645193] (imputed)	N
1602	chr7	133424908	133424909	rs12707116	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	7q33	EXOC4	rs12707116-T	NR	4E-11		6.616	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1602	chr7	133424908	133424909	rs12707116	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	7q33	EXOC4	rs12707116-T	NR	2E-16		0.024088169	[0.018-0.03] unit decrease	Affymetrix [NR]	N
1602	chr7	133424908	133424909	rs12707116	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability (MTAG)	436,124 European ancestry individuals	NA	7q33	EXOC4	rs12707116-?	NR	1E-12		7.12	z score decrease	Affymetrix, Illumina, Perlegen [7333576] (imputed)	N
1602	chr7	133424908	133424909	rs12707116	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability	107,207 European ancestry individuals	NA	7q33	EXOC4	rs12707116-?	NR	5E-10		6.227	z score decrease	Affymetrix, Illumina [7357080] (imputed)	N
1602	chr7	133430933	133430934	rs1362739	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	7q33	EXOC4	rs1362739-A	0.4792	5E-11		0.013313866	[0.0094-0.0173] unit increase	Affymetrix [up to 18485882] (imputed)	N
1602	chr7	133430933	133430934	rs1362739	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	7q33	EXOC4	rs1362739-?	NR	1E-9		0.012072104	[0.0082-0.0159] unit increase	NR [7306098]	N
1602	chr7	133430933	133430934	rs1362739	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	7q33	NR	rs1362739-A	NR	2E-14		7.662	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1602	chr7	133430933	133430934	rs1362739	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability	107,207 European ancestry individuals	NA	7q33	EXOC4	rs1362739-?	NR	4E-10		6.239	z score increase	Affymetrix, Illumina [7357080] (imputed)	N
1603	chr7	133436767	133436768	rs4728298	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	7q33	Intergenic	rs4728298-T	0.8134	1E-12		0.0177	[0.013-0.023] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1603	chr7	133447650	133447651	rs7804463	29899525	Klimentidis YC	2018-06-13	Int J Obes (Lond)	Genome-wide association study of habitual physical activity in over 377,000 UK Biobank participants identifies multiple variants including CADM2 and APOE.	Moderate to vigorous physical activity levels	377,234 European ancestry individuals	NA	7q33	EXOC4	rs7804463-T	0.53	1E-11		0.015	unit increase	Affymetrix [11800000] (imputed)	N
1603	chr7	133453873	133453874	rs11772444	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	7q33	EXOC4	rs11772444-G	0.811229	2E-14		0.0202784	[0.015-0.025] unit increase	NR [16516521] (imputed)	N
1603	chr7	133453873	133453874	rs11772444	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	7q33	Intergenic	rs11772444-A	0.1862	3E-20	(MTAG)	0.0212	[0.017-0.026] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1603	chr7	133496881	133496882	rs137925278	33590662	Heilbronner U	2021-02-15	Am J Med Genet B Neuropsychiatr Genet	"The Heidelberg Five" personality dimensions: Genome-wide associations, polygenic risk for neuroticism, and psychopathology 20 years after assessment.	Type A behavior	3,268 European ancestry individuals	NA	7q33	NR	rs137925278-A	0.9897	2E-6		0.6177	[0.37-0.87] unit decrease	Illumina [8348463] (imputed)	N
1603	chr7	133505100	133505101	rs7781266	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (college completion)	280,007 European ancestry individuals	NA	7q33	NR	rs7781266-?	0.7803	3E-9		1.042923	[NR]	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
1603	chr7	133506954	133506955	rs13243553	29899525	Klimentidis YC	2018-06-13	Int J Obes (Lond)	Genome-wide association study of habitual physical activity in over 377,000 UK Biobank participants identifies multiple variants including CADM2 and APOE.	Vigorous physical activity	98,060 European ancestry active cases, 162,995 European ancestry inactive controls	NA	7q33	EXOC4	rs13243553-G	0.61	9E-11		1.04		Affymetrix [11800000] (imputed)	N
1603	chr7	133531431	133531432	rs6975134	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	7q33	NR	rs6975134-T	0.423459	8E-14		0.047648497	[0.035-0.06] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1603	chr7	133531431	133531432	rs6975134	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	7q33	Intergenic	rs6975134-T	0.5993	5E-14		0.0219	[0.016-0.028] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
1603	chr7	133535713	133535714	rs6972284	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	7q33	NR	rs6972284-?	NR	2E-7		5.191	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1603	chr7	133536350	133536351	rs2346264	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	417,580 European ancestry individuals	NA	7q33		rs2346264-A	0.217315	1E-9		0.015	[0.011-0.019] unit increase	NR [7250403] (imputed)	N
1604	chr7	133575016	133575017	rs200087953	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	7q33	NR	rs200087953-A	0.681804	3E-8		0.00505715	[0.003-0.0071] unit increase	Affymetrix [16582909] (imputed)	N
1604	chr7	133581472	133581473	rs7810870	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	7q33		rs7810870-G	NR	1E-8		0.0194	[0.013-0.026] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1604	chr7	133582972	133582973	rs7793739	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	7q33	EXOC4	rs7793739-T	0.4749	5E-9		0.011861118	[0.0079-0.0158] unit increase	Affymetrix [up to 18485882] (imputed)	N
1604	chr7	133585793	133585794	rs6958557	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	7q33	EXOC4	rs6958557-T	0.6067	4E-12		1.0264436		Affymetrix [11880941] (imputed)	N
1604	chr7	133589845	133589846	rs10279261	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	7q33	LRGUK	rs10279261-A	0.6167	5E-8		0.01130086	[0.0073-0.0154] unit decrease	Affymetrix [11514654] (imputed)	N
1604	chr7	133589845	133589846	rs10279261	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	7q33	NR	rs10279261-A	0.618	7E-18		0.00958076	[0.0074-0.0118] unit decrease	NR [9732723] (imputed)	N
1604	chr7	133589845	133589846	rs10279261	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	7q33	NR	rs10279261-A	0.618	6E-13		0.018872635	[0.014-0.024] unit decrease	NR [~ 10000000] (imputed)	N
1604	chr7	133592420	133592421	rs10236499	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Cognitive traits (MTAG)	331,679 British ancestry individuals	NA	7q33		rs10236499-?	NR	1E-11				NR [7857346] (imputed)	N
1604	chr7	133606157	133606158	rs4422723	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	7q33	EXOC4	rs4422723-A	NR	9E-13		0.020883946	[0.015-0.027] unit decrease	Affymetrix [NR]	N
1604	chr7	133606630	133606631	rs1030268	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	7q33	EXOC4	rs1030268-A	NR	3E-9		0.019503407	[0.013-0.026] unit decrease	Affymetrix [NR]	N
1604	chr7	133606993	133606994	rs141588684	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	7q33	Intergenic	rs141588684-?		5E-6		3.6	[2.07-6.23]	Illumina [7645193] (imputed)	N
1604	chr7	133611255	133611256	rs10263851	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	7q33	EXOC4	rs10263851-?		1E-9				NR [7428630] (imputed)	N
1604	chr7	133618852	133618853	rs6954712	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	7q33	NR	rs6954712-A	0.3932	5E-8				NR [9056863] (imputed)	N
1604	chr7	133630462	133630463	rs4728302	29520040	Coleman JRI	2018-03-08	Mol Psychiatry	Biological annotation of genetic loci associated with intelligence in a meta-analysis of 87,740 individuals.	Extremely high intelligence	1,247 European ancestry cases, 86,493 European ancestry controls	NA	7q33	EXOC4	rs4728302-T	0.582	1E-8		5.66	NR z score decrease decrease	Illumina [up to 12595966] (imputed)	N
1604	chr7	133630462	133630463	rs4728302	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	7q33	EXOC4	rs4728302-T	NR	8E-16		0.023831645	[0.018-0.03] unit decrease	Affymetrix [NR]	N
1604	chr7	133630462	133630463	rs4728302	28530673	Sniekers S	2017-05-22	Nat Genet	Genome-wide association meta-analysis of 78,308 individuals identifies new loci and genes influencing human intelligence.	Intelligence	up to 58,799 European ancestry adults, up to 19,509 European ancestry children	NA	7q33	EXOC4, LOC101928861	rs4728302-T	0.5973	4E-7	(Adults)	5.08	z score decrease	Affymetrix, Illumina [12104294] (imputed)	N
1604	chr7	133630462	133630463	rs4728302	28530673	Sniekers S	2017-05-22	Nat Genet	Genome-wide association meta-analysis of 78,308 individuals identifies new loci and genes influencing human intelligence.	Intelligence	up to 58,799 European ancestry adults, up to 19,509 European ancestry children	NA	7q33	EXOC4, LOC101928861	rs4728302-T	0.5973	2E-9		5.967	z score decrease	Affymetrix, Illumina [12104294] (imputed)	N
1604	chr7	133635873	133635874	rs10258052	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Verbal-numerical reasoning	171,304 British ancestry individuals	NA	7q33		rs10258052-?	NR	2E-10				NR [7857346] (imputed)	N
1604	chr7	133641504	133641505	rs2971963	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	7q33	NR	rs2971963-A	NR	2E-10		6.36	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1604	chr7	133642741	133642742	rs2346268	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	7q33	EXOC4	rs2346268-A	NR	3E-12		0.02131768	[0.015-0.027] unit increase	Affymetrix [NR]	N
1604	chr7	133643777	133643778	rs2971970	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	7q33		rs2971970-T	0.2177	2E-11		0.017	[0.011-0.023] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
1604	chr7	133643777	133643778	rs2971970	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	7q33	EXOC4	rs2971970-T	NR	1E-11		0.024300301	[0.017-0.031] unit decrease	Affymetrix [NR]	N
1604	chr7	133662431	133662432	rs6467512	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	7q33	Intergenic	rs6467512-T	0.7053	1E-14	(MTAG)	0.0151	[0.011-0.019] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1604	chr7	133662431	133662432	rs6467512	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	7q33	Intergenic	rs6467512-T	0.705	2E-14	(MTAG)	0.0139	[0.01-0.017] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1604	chr7	133662431	133662432	rs6467512	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	7q33	Intergenic	rs6467512-T	0.7091	3E-11	(MTAG)	0.0168	[0.012-0.022] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1604	chr7	133676100	133676101	rs6949760	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	7q33	Intergenic	rs6949760-C	0.345	4E-23		0.0236	[0.019-0.028] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1604	chr7	133676100	133676101	rs6949760	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	7q33	NR	rs6949760-A	NR	8E-9		5.763	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1604	chr7	133680600	133680601	rs3823572	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	7q33	EXOC4	rs3823572-A	NR	2E-8		5.654	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1604	chr7	133680600	133680601	rs3823572	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	7q33	EXOC4	rs3823572-A	NR	4E-15		0.02299677	[0.017-0.029] unit increase	Affymetrix [NR]	N
1605	chr7	133702096	133702097	rs4731992	33563987	Tyrrell J	2021-02-09	Nat Commun	Genetic predictors of participation in optional components of UK Biobank.	Participation in an health questionnaire (not invited vs invited)	336,633 European ancestry cases, 114,464 European ancestry controls	NA	7q33	NR	rs4731992-A	0.217912	2E-11		1.007	[1.005, 1.009]	Affymetrix [39302896] (imputed)	N
1605	chr7	133702096	133702097	rs4731992	33563987	Tyrrell J	2021-02-09	Nat Commun	Genetic predictors of participation in optional components of UK Biobank.	Acceptance of an invitation to participate in a mental health questionnaire	146,074 European ancestry cases, 148,713 European ancestry controls	NA	7q33	NR	rs4731992-A	0.22	3E-8		0.97	[0.96, 0.98]	Affymetrix [39302896] (imputed)	N
1605	chr7	133702096	133702097	rs4731992	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	7q33		rs4731992-?	NR	7E-16				NR [~ 8900000] (imputed)	N
1605	chr7	133702096	133702097	rs4731992	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	7q33	EXOC4	rs4731992-A	NR	4E-8		5.493	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1605	chr7	133730323	133730324	rs12707134	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	7q33	Intergenic	rs12707134-C	0.6975	3E-11		0.0141	[0.01-0.0182] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1605	chr7	133733916	133733917	rs2346449	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	7q33	EXOC4	rs2346449-T	NR	2E-8		5.578	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1605	chr7	133747945	133747946	rs11770757	23535033	Sherva R	2013-03-24	Alzheimers Dement	Genome-wide association study of the rate of cognitive decline in Alzheimer's disease.	Alzheimer's disease (cognitive decline)	303 European ancestry cases		7q33	EXOC4	rs11770757-?	0.04	5E-7		0.16	unit decrease	Illumina [NR] (imputed)	N
1605	chr7	133755237	133755238	rs76118093	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Gamma glutamyl transferase levels in excessive alcohol consumption	951 individuals	NA	7q33	NR	rs76118093-?	NR	4E-6		0.1204	[0.07-0.171] unit decrease	Illumina [~ 7800000] (imputed)	N
1605	chr7	133774965	133774966	rs75241754	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	7q33	Intergenic	rs75241754-T	0.8962	5E-8	(MTAG)	0.0148	[0.0095-0.0201] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1605	chr7	133818844	133818845	rs34060248	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	7q33		rs34060248-C	0.589	3E-16		0.01	[0.008-0.012] unit increase	NR [NR] (imputed)	N
1605	chr7	133818844	133818845	rs34060248	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	7q33	LRGUK	rs34060248-C	0.5933	6E-11		0.015756007	[0.011-0.02] unit increase	Affymetrix [11515109] (imputed)	N
1606	chr7	133840651	133840652	rs1561112	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	7q33	NR	rs1561112-C	0.412815	4E-9	(Conditioned on chr7:133589846)	0.015243796	[0.01-0.02] unit decrease	NR [~ 10000000] (imputed)	N
1606	chr7	133931337	133931338	rs2544172	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein B4GALT7	5,353 Icelandic ancestry individuals	NA	7q33		rs2544172-C	0.4099	4E-16		0.154477	[0.12-0.19] unit increase	Illumina [7506463] (imputed)	N
1607	chr7	133981378	133981379	rs2058976	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein POGLUT1	5,363 Icelandic ancestry individuals	NA	7q33		rs2058976-T	0.4302	9E-132		0.445918	[0.41-0.48] unit increase	Illumina [7506463] (imputed)	N
1607	chr7	133984126	133984127	rs2075371	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	7q33	SLC35B4	rs2075371-G	0.4769	4E-20		0.03312066	[0.026-0.04] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1607	chr7	133987393	133987394	rs148913805	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	7q33	AKR1B1	rs148913805-T	0.98203125	8E-9	(AKR1B1, 9854_36_3)	0.52688265	[0.35-0.71] unit increase	Illumina [> 1000000] (imputed)	N
1607	chr7	133987895	133987896	rs2544215	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MANF	5,363 Icelandic ancestry individuals	NA	7q33		rs2544215-C	0.4318	4E-92		0.379527	[0.34-0.42] unit increase	Illumina [7506463] (imputed)	N
1607	chr7	133989881	133989882	rs2598293	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	7q33	NR	rs2598293-T	0.4763	2E-9		1.036	[1.02-1.05]	Affymetrix, Illumina [NR] (imputed)	N
1607	chr7	133993013	133993014	rs2544221	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	7q33	SLC35B4	rs2544221-C	0.463111	5E-9		0.013325967	[0.0089-0.0178] unit decrease	Affymetrix [93095623] (imputed)	N
1607	chr7	133993013	133993014	rs2544221	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q33	NR	rs2544221-C	0.462737	2E-47				Affymetrix, Illumina [17210439] (imputed)	N
1607	chr7	134000744	134000744	rs5887674	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	7q33	SLC35B4	rs5887674-CTT	0.475056	4E-36		0.028306408	[0.024-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
1607	chr7	134007586	134007587	rs10954442	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	7q33		rs10954442-A	0.472814	5E-30		0.025692156	[0.021-0.03] unit increase	Affymetrix [93095623] (imputed)	N
1607	chr7	134019352	134019353	rs34574525	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	7q33	NR	rs34574525-A	0.482	4E-10		0.00672571	[0.0046-0.0088] unit increase	NR [9732723] (imputed)	N
1607	chr7	134039987	134039988	rs79944011	31754133	Singh S	2019-11-21	Sci Rep	Genome Wide Analysis Approach Suggests Chromosome 2 Locus to be Associated with Thiazide and Thiazide Like-Diuretics Blood Pressure Response.	Systolic blood pressure response to thiazide and thiazide-like diuretics in hypertension	290 African American individuals, 397 European ancestry individuals	NA	7q33	SLC35B4	rs79944011-A	NR	5E-8	(AA)	19.13	NR unit increase	Illumina [NR] (imputed)	N
1608	chr7	134093812	134093813	rs17773014	34716350	Lin WY	2021-10-29	Nat Commun	Genome-wide association study identifies susceptibility loci for acute myeloid leukemia.	Acute myeloid leukemia (normal cytogenetics)	3,041 European ancestry cases, 6,760 European ancestry controls	977 European ancestry cases, 3,728 European ancestry controls	7q33		rs17773014-A	NR	4E-7		1.26	[1.15-1.37]	Affymetrix, Illumina [6496414] (imputed)	N
1608	chr7	134135620	134135621	rs2229542	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein AKR1B1	5,357 Icelandic ancestry individuals	NA	7q33		rs2229542-C	0.01618	5E-72		1.27746	[1.14-1.42] unit decrease	Illumina [7506463] (imputed)	N
1608	chr7	134135620	134135621	rs2229542	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7q33	NR	rs2229542-C	0.01916	7E-12	(MAP4)	0.02139	NR unit increase	Illumina [1671387] (imputed)	N
1608	chr7	134135620	134135621	rs2229542	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7q33	NR	rs2229542-C	0.01916	1E-8	(TPM4)	0.1046	NR unit increase	Illumina [1671387] (imputed)	N
1608	chr7	134135620	134135621	rs2229542	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	7q33	AKR1B1	rs2229542-C	0.014	5E-15	(Aldose reductase, AKR1B1.9854.36.3)	0.82	[0.62-1.02] unit decrease	Affymetrix [10572788] (imputed)	N
1608	chr7	134192486	134192487	rs12386571	29682794	Szekely E	2018-04-22	Genet Epidemiol	Genetic associations with childhood brain growth, defined in two longitudinal cohorts.	White matter growth	581 European ancestry individuals, 31 African American individuals, 8 Asian American individuals 15 admixed individuals, 80 other ancestries individuals	NA	7q33	AKR1B1, AKR1B10	rs12386571-?	NR	9E-9				Illumina [at least 653030]	N
1608	chr7	134194500	134194501	rs782520	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	7q33		rs782520-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1608	chr7	134195689	134195690	rs782513	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	7q33		rs782513-T	0.5771	6E-13		0.16285385	[0.12-0.21] mmHg increase	Affymetrix, Illumina [242865] (imputed)	N
1608	chr7	134195689	134195690	rs782513	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Hypertension	810,865 European ancestry individuals	354,096 European ancestry individuals	7q33		rs782513-T	0.5796	1E-11		6.78041	z score increase	Affymetrix, Illumina [239843] (imputed)	N
1608	chr7	134195689	134195690	rs782513	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	7q33		rs782513-T	0.5774	1E-13		0.10793755	[0.08-0.135] mmHg increase	Affymetrix, Illumina [242866] (imputed)	N
1608	chr7	134203427	134203428	rs782507	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls, 49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	7q33		rs782507-T	NR	7E-13		0.0413	[0.03-0.052] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1608	chr7	134215258	134215259	rs1722886	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	7q33	AKR1B10	rs1722886-A	0.567	2E-14		0.1166	[0.087-0.147] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1608	chr7	134215402	134215403	rs1722883	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	7q33		rs1722883-C	NR	1E-11		0.0334	[0.024-0.043] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1608	chr7	134215402	134215403	rs1722883	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	7q33	AKR1B10	rs1722883-C	0.47102	4E-10		0.03793771	[0.026-0.05] unit decrease	Affymetrix [7288503] (imputed)	N
1609	chr7	134219039	134219040	rs143004982	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial lung adenocarcinoma	775 European ancestry cases, 31,563 European ancestry controls	NA	7q33	AKR1B10	rs143004982-G	0.014	3E-6		2.83	[1.83-4.38]	Illumina [8672852] (imputed)	N
1609	chr7	134221693	134221694	rs706159	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	7q33		rs706159-?	NR	5E-13				NR [~ 8900000] (imputed)	N
1609	chr7	134229806	134229807	rs706150	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	7q33	LOC441282	rs706150-?	NR	9E-6	(symmetric dimethylarginine)	0.61884344	[0.34-0.89] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1609	chr7	134242491	134242492	rs73451216	33539483	Li Z	2021-02-04	PLoS One	Bivariate genome-wide association study (GWAS) of body mass index and blood pressure phenotypes in northern Chinese twins.	Body mass index and systolic blood pressure (bivariate analysis)	274 Chinese ancestry dizygotic twins	NA	7q33	AKR1B15	rs73451216-?	NR	6E-6				Illumina [7401356] (imputed)	N
1609	chr7	134250321	134250322	rs4732038	20834067	Yashin AI	2010-09-01	Aging (Albany NY)	Joint influence of small-effect genetic variants on human longevity.	Longevity	1,173 individuals	NA	7q33	AKR1B15	rs4732038-?	NR	1E-6	(less than or equal to)			NR [~ 550000]	N
1609	chr7	134308253	134308254	rs964546	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	7q33	LOC441282	rs964546-?	NR	8E-6	(indole-3-propionate)	0.24992062	[0.14-0.36] unit increase	Affymetrix [at least 2500000] (imputed)	N
1609	chr7	134343483	134343484	rs2161802	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	7q33	BPGM	rs2161802-A	0.48609375	7E-6	(BPGM, 12020_39_3)	0.10947977	[0.062-0.157] unit increase	Illumina [> 1000000] (imputed)	N
1610	chr7	134369309	134369310	rs11760376	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	7q33	AC009276.4	rs11760376-G	0.004	4E-9		0.1834382	[0.12-0.24] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1610	chr7	134369309	134369310	rs11760376	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	7q33	AC009276.4	rs11760376-G	0.004	2E-9		0.1847766	[0.12-0.25] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1610	chr7	134380775	134380776	rs2347694	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	7q33		rs2347694-A	0.271743	1E-12		0.017869068	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1610	chr7	134382329	134382330	rs4728335	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	7q33		rs4728335-C	0.350305	2E-79		0.044071797	[0.039-0.049] unit decrease	Affymetrix [93095623] (imputed)	N
1610	chr7	134382329	134382330	rs4728335	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	7q33		rs4728335-?	NR	1E-12				NR [~ 8900000] (imputed)	N
1610	chr7	134382329	134382330	rs4728335	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	7q33	intergenic	rs4728335-C	0.3502	3E-34		0.04572998	[0.038-0.053] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1610	chr7	134382783	134382784	rs4524734	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	7q33		rs4524734-T	0.350254	1E-71		0.042024843	[0.037-0.047] unit decrease	Affymetrix [93095623] (imputed)	N
1610	chr7	134382783	134382784	rs4524734	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	7q33	intergenic	rs4524734-T	0.3499	8E-33		0.04474542	[0.037-0.052] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1610	chr7	134384956	134384957	rs10954464	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	7q33	NR	rs10954464-A	0.347413	1E-14		0.01789327	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1610	chr7	134384956	134384957	rs10954464	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	7q33	NR	rs10954464-A	0.346198	1E-15		0.015486	[0.012-0.019] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1610	chr7	134384956	134384957	rs10954464	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	7q33	NR	rs10954464-A	0.34663	2E-17		0.016877	[0.013-0.021] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1610	chr7	134384956	134384957	rs10954464	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	7q33	intergenic	rs10954464-A	0.3471	1E-23		0.03780773	[0.03-0.045] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1610	chr7	134384956	134384957	rs10954464	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	7q33	intergenic	rs10954464-A	0.3471	2E-21		0.03590182	[0.028-0.043] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1610	chr7	134388082	134388083	rs2347696	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	7q33		rs2347696-C	NR	5E-13		0.0147	[0.011-0.019] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1610	chr7	134388082	134388083	rs2347696	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	7q33	NR	rs2347696-C	0.351782	6E-56		0.03699953	[0.032-0.042] unit decrease	Affymetrix [93095623] (imputed)	N
1610	chr7	134388082	134388083	rs2347696	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	7q33	NR	rs2347696-C	0.351776	8E-51		0.03521702	[0.031-0.04] unit decrease	Affymetrix [93095623] (imputed)	N
1610	chr7	134388082	134388083	rs2347696	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	7q33		rs2347696-C	0.351717	8E-84		0.04532022	[0.041-0.05] unit decrease	Affymetrix [93095623] (imputed)	N
1610	chr7	134388082	134388083	rs2347696	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q33	NR	rs2347696-C	0.36298	1E-18				Affymetrix, Illumina [24649327] (imputed)	N
1610	chr7	134388082	134388083	rs2347696	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	7q33	intergenic	rs2347696-C	0.3526	3E-33		0.04476225	[0.037-0.052] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1610	chr7	134389600	134389601	rs6467551	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q33	NR	rs6467551-C	0.336778	2E-17				Affymetrix, Illumina [23472807] (imputed)	N
1610	chr7	134389712	134389713	rs6944563	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	7q33		rs6944563-T	NR	1E-11		0.0152	[0.011-0.02] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
1610	chr7	134390963	134390964	rs2347699	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	7q33		rs2347699-A	0.24	4E-16		8.13	z score increase	Affymetrix [9061022] (imputed)	N
1610	chr7	134390963	134390964	rs2347699	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	7q33	NR	rs2347699-T	0.720851	3E-8		0.0121069	[0.0079-0.0164] unit increase	Affymetrix [15000001]	N
1610	chr7	134393032	134393033	rs62462473	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	7q33		rs62462473-?	NR	8E-11				NR [~ 8900000] (imputed)	N
1610	chr7	134393624	134393625	rs2347705	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	7q33	NR	rs2347705-G	0.3925	8E-14				NR [9056863] (imputed)	N
1610	chr7	134395573	134395574	rs6964492	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	7q33	NR	rs6964492-?	NR	3E-6		0.0378	[0.022-0.054] unit increase	Illumina [at least 560000] (imputed)	N
1610	chr7	134403740	134403741	rs2347709	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	7q33		rs2347709-T	0.35	6E-17		8.37	z score increase	Affymetrix [9061022] (imputed)	N
1610	chr7	134403740	134403741	rs2347709	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	7q33	NR	rs2347709-T	0.3927	3E-17				NR [9056863] (imputed)	N
1610	chr7	134418295	134418296	rs10259262	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	7q33		rs10259262-A	0.37	3E-16		8.17	z score increase	Affymetrix [9061022] (imputed)	N
1610	chr7	134422731	134422732	rs10155941	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7q33		rs10155941-?	NR	8E-23				NR [~ 8900000] (imputed)	N
1610	chr7	134479483	134479484	rs2003620	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Hepatocyte growth factor levels	8,292 Finnish ancestry individuals	NA	7q33	NR	rs2003620-C		3E-6		0.2279	[0.13-0.32] SD units decrease	NR [10700000] (imputed)	N
1611	chr7	134490461	134490462	rs17169635	24554482	Leger PD	2014-02-20	J Neurovirol	Genome-wide association study of peripheral neuropathy with D-drug-containing regimens in AIDS Clinical Trials Group protocol 384.	Response to anti-retroviral therapy (ddI/d4T) in HIV-1 infection (Grade 1 peripheral neuropathy)	40 European ancestry cases, 37 African American cases, 13 Hispanic cases, 85 European ancestry controls, 49 African American controls, 30 Hispanic controls	NA	7q33	CALD1	rs17169635-?		6E-6	(EA)	3.526	[NR]	Illumina [936149]	N
1611	chr7	134493908	134493909	rs3778847	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	7q33	NR	rs3778847-T	0.315	2E-6	(IFNalpha_CXCL10_of_Monocytes)			Illumina [5084123] (imputed)	N
1611	chr7	134520520	134520521	rs10237321	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	23,963 European ancestry cases, 306,942 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	43,254 European ancestry cases, 1,471,118 European ancestry controls	7q33	CALD1	rs10237321-A	NR	2E-6		0.0348	unit decrease	Illumina [15409056] (imputed)	N
1611	chr7	134548867	134548868	rs10232322	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	7q33	CALD1	rs10232322-G	0.85974	8E-12		0.00217944	[0.0015-0.0028] unit increase	Affymetrix [13995440] (imputed)	N
1611	chr7	134555126	134555127	rs2290361	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	7q33	CALD1	rs2290361-G	0.57	3E-13		7.28	z-score increase	Affymetrix [4311822] (imputed)	N
1611	chr7	134556317	134556318	rs7781307	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	7,894 Sub-Saharan African ancestry individuals	NA	7q33		rs7781307-G	0.63941	2E-6		0.00909892	[0.0053-0.0129] unit decrease	Illumina [13900000] (imputed)	N
1611	chr7	134559079	134559080	rs28674970	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	7q33	CALD1	rs28674970-T	NR	4E-6	(men)	0.249546	[0.14-0.36] unit increase	Illumina [13520550] (imputed)	N
1611	chr7	134559379	134559380	rs13247106	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	7q33	AGBL3	rs13247106-G	0.309812031687504	6E-8		0.0031645	[NR] unit decrease	Affymetrix [> 30000000] (imputed)	N
1611	chr7	134559499	134559500	rs145722871	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	7q33		rs145722871-A	NR	9E-9		0.0169	[0.011-0.023] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
1611	chr7	134563569	134563570	rs79846815	27663945	Middeldorp CM	2016-08-05	J Am Acad Child Adolesc Psychiatry	A Genome-Wide Association Meta-Analysis of Attention-Deficit/Hyperactivity Disorder Symptoms in Population-Based Pediatric Cohorts.	Attention deficit hyperactivity disorder symptom score	17,666 children	NA	7q33	CALD1	rs79846815-A	0.97	2E-6				Affymetrix, Illumina [at least 5260671] (imputed)	N
1611	chr7	134566070	134566071	rs1452909	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	7q33		rs1452909-?	NR	4E-17				NR [~ 8900000] (imputed)	N
1611	chr7	134568255	134568256	rs10247392	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (PANSS score)	1,390 European ancestry individuals	NA	7q33		rs10247392-G	NR	5E-6	(GLM)	2.9047	[NR] unit increase	Illumina [~ 9000000] (imputed)	N
1611	chr7	134568255	134568256	rs10247392	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (PANSS score)	1,390 European ancestry individuals	NA	7q33		rs10247392-?	NR	5E-6	(MLM)	0.1695217	[0.097-0.242] unit decrease	Illumina [~ 9000000] (imputed)	N
1611	chr7	134576839	134576840	rs17168118	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	7q33		rs17168118-G	NR	1E-20		0.019	[0.015-0.023] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
1611	chr7	134576839	134576840	rs17168118	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	7q33	CALD1	rs17168118-A	0.707124	8E-19		0.00502609	[0.0039-0.0061] unit decrease	Affymetrix [13995440] (imputed)	N
1612	chr7	134624355	134624356	rs4732070	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 3)	4,680 European ancestry individuals	3,566 European ancestry individuals	7q33		rs4732070-T	0.276759448	9E-9				Illumina [7417619] (imputed)	N
1612	chr7	134659239	134659240	rs2732895	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	7q33	CALD1	rs2732895-C	0.555249	1E-9		0.014180067	[0.0096-0.0188] unit decrease	Affymetrix [93095623] (imputed)	N
1612	chr7	134659239	134659240	rs2732895	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	7q33	CALD1	rs2732895-C	0.555259	2E-12		0.016511735	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1612	chr7	134659239	134659240	rs2732895	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q33	NR	rs2732895-C	0.578499	3E-13				Affymetrix, Illumina [24558453] (imputed)	N
1612	chr7	134659239	134659240	rs2732895	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	7q33	NR	rs2732895-C	0.573068	3E-15		0.015422	[0.012-0.019] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
1612	chr7	134659239	134659240	rs2732895	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	7q33		rs2732895-?	NR	7E-9				NR [~ 8900000] (imputed)	N
1612	chr7	134659325	134659326	rs2718146	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	7q33	CALD1	rs2718146-G	0.640541	2E-10		0.014705632	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
1612	chr7	134665041	134665043	rs200611641	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	7q33	NR	rs200611641-D	0.638557	5E-12		0.014785	[0.011-0.019] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
1612	chr7	134665124	134665125	rs4490780	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q33	NR	rs4490780-A	0.612023	5E-10				Affymetrix, Illumina [24653286] (imputed)	N
1612	chr7	134669522	134669523	rs73151974	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	7q33	AGBL3	rs73151974-C	0.855977	4E-9		0.0161097	[0.011-0.021] unit increase	Affymetrix [NR] (imputed)	N
1612	chr7	134681305	134681306	rs11973318	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	7q33	AGBL3	rs11973318-T	0.855852	9E-9		0.0161304	[0.011-0.022] unit increase	Affymetrix [NR] (imputed)	N
1613	chr7	134743727	134743728	rs4728350	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	7q33	AGBL3	rs4728350-G	0.430739	3E-11		0.014896054	[0.011-0.019] unit increase	Affymetrix [93095623] (imputed)	N
1613	chr7	134743727	134743728	rs4728350	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	7q33	NR	rs4728350-G	0.432996	3E-10		0.011856	[0.0082-0.0156] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
1613	chr7	134785740	134785741	rs17231212	22610502	Kennedy RB	2012-05-19	Hum Genet	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IL-10)	Up to 512 European ancestry individuals, up to 199 African American individuals	NA	7q33	LOC100129730	rs17231212-G		2E-8	(AA)			Illumina [NR]	N
1613	chr7	134855724	134855725	rs76510925	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	7q33		rs76510925-C	NR	1E-8		0.0126	[0.0083-0.0169] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
1614	chr7	134882422	134882423	rs292580	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	7q33	WDR91	rs292580-A	0.73	6E-14		7.51	z-score increase	Affymetrix [4314223] (imputed)	N
1614	chr7	134884186	134884187	rs292585	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	7q33	MIR6509	rs292585-C	0.267525	5E-12		0.00301083	[0.0022-0.0039] unit decrease	Affymetrix [13995440] (imputed)	N
1614	chr7	134884186	134884187	rs292585	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	7q33	WDR91	rs292585-T	0.73	2E-10		6.33	z-score increase	Affymetrix [4312306] (imputed)	N
1614	chr7	134884419	134884420	rs113000763	34838041	Naderi E	2021-11-27	J Transl Med	A two-stage genome-wide association study of radiation-induced acute toxicity in head and neck cancer.	radiation-induced toxicity (physician-rated acute sticky saliva)	859 Dutch ancestry individuals	246 Dutch ancestry individuals	7q33		rs113000763-C	NR	2E-6		0.27092543	[0.16-0.38] increase	Illumina [6334277] (imputed)	N
1614	chr7	134911783	134911784	rs292623	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	7q33		rs292623-T	NR	1E-15		0.0169	[0.013-0.021] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
1614	chr7	134911783	134911784	rs292623	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	7q33	STRA8	rs292623-C	0.259528	7E-23		0.00247617	[0.002-0.003] unit decrease	Affymetrix [13995440] (imputed)	N
1614	chr7	134918607	134918608	rs12665884	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	7q33		rs12665884-A	NR	9E-14		0.0175	[0.013-0.022] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
1614	chr7	134940303	134940304	rs73156152	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	7q33		rs73156152-A	NR	7E-12		0.0153	[0.011-0.02] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
1614	chr7	134976270	134976271	rs55827704	31311600	Namjou B	2019-07-17	BMC Med	GWAS and enrichment analyses of non-alcoholic fatty liver disease identify new trait-associated genes and pathways across eMERGE Network.	Aspartate aminotransferase levels in non-alcoholic fatty liver disease	1,075 European ancestry individuals	NA	7q33	SLC23A4P	rs55827704-A	0.0549348	9E-6		0.387469	[0.22-0.56] unit increase	NR [7263501] (imputed)	N
1614	chr7	134985605	134985606	rs1559532	34231218	McDonough CW	2021-07-07	Clin Pharmacol Ther	Adverse Cardiovascular Outcomes and Antihypertensive treatment: A Genome-Wide Interaction Meta-Analysis in the International Consortium for Antihypertensive Pharmacogenomics Studies (ICAPS).	Adverse cardiovascular outcome x ACE inhibitors/ARBs interaction in hypertension	2,559 European ancestry individuals	NA	7q33		rs1559532-T	0.293	9E-7				Affymetrix, Illumina [6400000] (imputed)	N
1614	chr7	135000421	135000422	rs1812515	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels (MTAG)	18,590 European ancestry individuals	NA	7q33		rs1812515-?	NR	8E-6		4.47	Z score decrease	Affymetrix, Illumina [NR] (imputed)	N
1614	chr7	135000421	135000422	rs1812515	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin I concentration (MTAG)	12,730 European ancestry individuals	NA	7q33		rs1812515-?	NR	8E-6		4.46	Z score decrease	Affymetrix, Illumina [NR] (imputed)	N
1615	chr7	135045785	135045786	rs6962887	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	7q33		rs6962887-G	NR	1E-25		0.0151	[0.012-0.018] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1615	chr7	135045785	135045786	rs6962887	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	7q33	NR	rs6962887-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
1615	chr7	135045785	135045786	rs6962887	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7q33		rs6962887-?	NR	5E-36				NR [~ 8900000] (imputed)	N
1615	chr7	135050259	135050259	rs4034907	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Meat-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	7q33	CNOT4, NUP205	rs4034907-?	NR	2E-8		0.013953	[0.0091-0.0188] unit decrease	Affymetrix [25921788] (imputed)	N
1615	chr7	135050993	135050994	rs12707228	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	7q33	CNOT4	rs12707228-G	0.1978	5E-8		0.013786192	[0.0088-0.0187] unit increase	Affymetrix [up to 18485882] (imputed)	N
1615	chr7	135051253	135051254	rs12670901	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	7q33	CNOT4	rs12670901-A	0.4535	5E-9		0.01183666	[0.0079-0.0158] unit increase	Affymetrix [up to 18485882] (imputed)	N
1615	chr7	135051253	135051254	rs12670901	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	7q33	Intergenic	rs12670901-A	0.5566	3E-16	(MTAG)	0.0135	[0.01-0.017] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1615	chr7	135051253	135051254	rs12670901	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	7q33	Intergenic	rs12670901-A	0.5529	5E-11	(MTAG)	0.0151	[0.011-0.02] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1615	chr7	135051978	135051979	rs4728354	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	7q33		rs4728354-?	NR	6E-13		0.0196	unit decrease	NR [NR]	N
1615	chr7	135053637	135053638	rs1863004	31620175	Kornilov SA	2019-09-18	Front Genet	Genome-Wide Homozygosity Mapping Reveals Genes Associated With Cognitive Ability in Children From Saudi Arabia.	Numerical cognitive ability	354 Saudi Arabian ancestry children	NA	7q33	CNOT4	rs1863004-?	NR	9E-6		5.73	[3.24-8.22] unit decrease	Illumina [285340]	N
1615	chr7	135055740	135055741	rs10255837	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	7q33		rs10255837-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1615	chr7	135058553	135058554	rs6467589	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	7q33		rs6467589-?	NR	4E-9		0.0133743	[0.0089-0.0178] unit increase	Affymetrix [20259828] (imputed)	N
1615	chr7	135064881	135064882	rs3812275	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	7q33	NR	rs3812275-C	0.40297799999999995	1E-8		0.00670456	[0.0044-0.009] unit increase	Affymetrix [16582621] (imputed)	N
1615	chr7	135064881	135064882	rs3812275	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	7q33	NR	rs3812275-C	0.40297799999999995	3E-8		0.00676937	[0.0043-0.0092] unit increase	Affymetrix [16582614] (imputed)	N
1615	chr7	135082750	135082751	rs3812281	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	7q33		rs3812281-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1615	chr7	135082750	135082751	rs3812281	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	7q33		rs3812281-T	0.6016	3E-15		0.0113	[0.0086-0.014] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1615	chr7	135082750	135082751	rs3812281	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	7q33	Intergenic	rs3812281-T	0.6016	4E-21	(MTAG)	0.0126	[0.01-0.015] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1615	chr7	135086864	135086864	rs71531849	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	7q33	NR	rs71531849-CT	0.356163	1E-9		0.00812669	[0.0055-0.0108] unit increase	Affymetrix [16585854] (imputed)	N
1615	chr7	135086864	135086864	rs71531849	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	7q33	NR	rs71531849-CT	0.356163	5E-12		0.0105417	[0.0075-0.0136] unit increase	Affymetrix [16585866] (imputed)	N
1615	chr7	135099648	135099649	rs2551778	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	7q33	Intergenic	rs2551778-C	0.3975	4E-13		0.0168	[0.012-0.021] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1615	chr7	135103448	135103449	rs2551776	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	7q33	CNOT4	rs2551776-C	0.375379	3E-13		0.00377974	[0.0027-0.0048] unit increase	Affymetrix [13995440] (imputed)	N
1615	chr7	135123059	135123060	rs17480616	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	7q33	CNOT4	rs17480616-C	0.0307	5E-13		0.0383	[0.028-0.049] unit increase	Affymetrix [18391927] (imputed)	N
1615	chr7	135123059	135123060	rs17480616	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	244,730 European ancestry women	NA	7q33	CNOT4	rs17480616-C	0.031	2E-6		0.04	[0.026-0.054] unit increase	Affymetrix [18391927] (imputed)	N
1615	chr7	135123059	135123060	rs17480616	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	205,513 European ancestry men	NA	7q33	CNOT4	rs17480616-C	0.031	4E-8		0.04	[0.024-0.056] unit increase	Affymetrix [18391927] (imputed)	N
1616	chr7	135138330	135138331	rs2551769	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	7q33	CNOT4	rs2551769-G	0.710785	3E-9		0.0119115	[0.008-0.0158] unit decrease	NR [13737936] (imputed)	N
1616	chr7	135143970	135143971	rs1559535	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	7q33	NR	rs1559535-G	0.403012	2E-17		0.00695436	[0.0053-0.0086] unit increase	Affymetrix [16582909] (imputed)	N
1616	chr7	135143970	135143971	rs1559535	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	7q33	NR	rs1559535-G	0.403012	9E-16		0.00760492	[0.0057-0.0095] unit increase	Affymetrix [16582965] (imputed)	N
1616	chr7	135170469	135170470	rs10046574	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	7q33	NR	rs10046574-?	NR	8E-8	(AA)	17.77	[16.03-19.51]	Illumina [905956]	N
1616	chr7	135178603	135178604	rs117373257	33841421	Li J	2021-03-25	Front Immunol	Variants at the MHC Region Associate With Susceptibility to <i>Clostridioides difficile</i> Infection: A Genome-Wide Association Study Using Comprehensive Electronic Health Records.	Clostridioides difficle infection	1,160 European ancestry cases, 14,144 European ancestry controls	NA	7q33	CNOT4, TSPAN32, C11orf21	rs117373257-A	0.0133	3E-7		2.02	[1.61-2.47]	Illumina [64973696] (imputed)	N
1616	chr7	135212623	135212623	rs10627558	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	7q33	intergenic	rs10627558-CGT	0.2353	7E-16		0.0181	[0.014-0.022] unit decrease	Affymetrix [18391927] (imputed)	N
1616	chr7	135221169	135221170	rs6966898	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	7q33	NUP205	rs6966898-C	0.668057	2E-9		0.0132005	[0.0089-0.0175] unit increase	NR [16516521] (imputed)	N
1616	chr7	135225155	135225156	rs4732129	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	7q33	NUP205	rs4732129-?	NR	2E-8		0.012016234	[0.0078-0.0162] unit increase	NR [7306098]	N
1616	chr7	135237095	135237096	rs7791133	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	7q33	NR	rs7791133-A	0.3765	2E-9		0.013696517	NR unit decrease	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
1616	chr7	135237095	135237096	rs7791133	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (college completion)	280,007 European ancestry individuals	NA	7q33	NR	rs7791133-?	0.6205	1E-8		1.0348141	[NR]	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
1616	chr7	135247751	135247752	rs6467595	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	7q33	NUP205	rs6467595-C	0.227517	6E-10		0.0145539	[0.01-0.0192] unit decrease	Affymetrix [NR] (imputed)	N
1616	chr7	135248285	135248286	rs12707240	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	7q33	NUP205	rs12707240-G	0.317052	6E-12		0.01655814	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1616	chr7	135248557	135248558	rs10258495	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	7q33	NUP205	rs10258495-T	NR	3E-8		0.017863	[0.012-0.024] unit decrease	Affymetrix [323858] (imputed)	N
1616	chr7	135248557	135248558	rs10258495	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	7q33	NUP205	rs10258495-T	NR	5E-8		0.0177026	[0.011-0.024] unit decrease	Affymetrix [127266] (imputed)	N
1616	chr7	135250269	135250270	rs4728358	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	7q33	NR	rs4728358-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1616	chr7	135250269	135250270	rs4728358	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	7q33		rs4728358-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1616	chr7	135254268	135254269	rs35061496	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	7q33	Intergenic	rs35061496-T	0.8303	2E-8	(MTAG)	0.0099	[0.0066-0.0132] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1616	chr7	135260048	135260049	rs185746565	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	7q33	NUP205	rs185746565-C	1.0	5E-6	(AA)	0.554	unit increase	Illumina [NR] (imputed)	N
1616	chr7	135260048	135260049	rs185746565	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	7q33	NUP205	rs185746565-C	1.0	3E-6	(AA)	2.84	NR unit increase	Illumina [NR] (imputed)	N
1617	chr7	135274884	135274885	rs151136150	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	7q33		rs151136150-C	NR	2E-6		4.3228	[2.59-6.06] unit increase	Illumina [NR] (imputed)	N
1617	chr7	135278790	135278791	rs12530805	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	7q33		rs12530805-?	NR	7E-8				NR [~ 8900000] (imputed)	N
1617	chr7	135289853	135289854	rs6959832	35023831	Chong M	2022-01-13	Elife	GWAS and ExWAS of blood Mitochondrial DNA copy number identifies 71 loci and highlights a potential causal role in dementia.	Mitochondrial DNA copy number	395,718 British, Irish, Other White, South Asian, African ancestry individuals	NA	7q33	NR	rs6959832-A	0.414936	2E-23		0.021	[0.017-0.025] unit decrease	Affymetrix [23037915] (imputed)	N
1617	chr7	135289853	135289854	rs6959832	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	7q33	NUP205	rs6959832-A	0.507266	4E-14		0.016730743	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1617	chr7	135289853	135289854	rs6959832	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q33	NR	rs6959832-A	0.480002	3E-16				Affymetrix, Illumina [19872809] (imputed)	N
1617	chr7	135289853	135289854	rs6959832	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	7q33	NR	rs6959832-A	0.506863	4E-16		0.016175	[0.012-0.02] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
1617	chr7	135293127	135293128	rs4294134	21623375	Albagha OM	2011-05-29	Nat Genet	Genome-wide association identifies three new susceptibility loci for Paget's disease of bone.	Paget's disease	741 European ancestry cases, 2,699 European ancestry controls	1,474 European ancestry cases, 1,671 European ancestry controls	7q33	NUP205	rs4294134-G	0.84	8E-10		1.45	[1.29-1.63]	Illumina [2487078] (imputed)	N
1617	chr7	135301060	135301061	rs4732134	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7q33		rs4732134-?	NR	9E-22				NR [~ 8900000] (imputed)	N
1617	chr7	135304355	135304356	rs150498874	28203683	Heit JA	2017-02-16	Thromb Haemost	Identification of unique venous thromboembolism-susceptibility variants in African-Americans.	Venous thromboembolism adjusted for sickle cell variant rs77121243-T	393 African American cases, 4,941 African American controls.	NR	7q33	NUP205	rs150498874-T	0.0118	5E-7		3.86	[2.28-6.534]	Affymetrix, Illumina [14074516] (imputed)	N
1617	chr7	135305618	135305619	rs77344608	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	153,512 East Asian ancestry individuals	NA	7q33		rs77344608-C	0.210653	2E-10		0.0245616	[0.017-0.032] unit decrease	Illumina [13479135] (imputed)	N
1617	chr7	135311119	135311120	rs7810260	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	7q33	NUP205	rs7810260-A	0.507844	1E-10		0.014193576	[0.0099-0.0185] unit decrease	Affymetrix [93095623] (imputed)	N
1617	chr7	135329977	135329978	rs12530845	23222517	van der Harst P	2012-12-05	Nature	Seventy-five genetic loci influencing the human red blood cell.	Red blood cell traits	62,553 European ancestry individuals, 9,308 South Asian ancestry individuals	63,506 European ancestry individuals	7q33	NR	rs12530845-?	NR	3E-8	(MCH)			Affymetrix, Illumina, Perlegen [2711806] (imputed)	N
1617	chr7	135343574	135343575	rs73721664	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	7q33	C7orf73, AC093107.7	rs73721664-C	0.125657	7E-11		0.022049557	[0.015-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1617	chr7	135343574	135343575	rs73721664	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q33	NR	rs73721664-C	0.150399	9E-13				Affymetrix, Illumina [24332387] (imputed)	N
1617	chr7	135344210	135344211	rs7798256	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	7q33		rs7798256-A	NR	2E-16		0.0216	[0.017-0.027] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1617	chr7	135344210	135344211	rs7798256	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	7q33	C7orf73, AC093107.7	rs7798256-A	0.125668	8E-14		0.027647277	[0.02-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
1617	chr7	135344210	135344211	rs7798256	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	7q33	C7orf73, AC093107.7	rs7798256-A	0.125686	2E-11		0.022854384	[0.016-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
1617	chr7	135344210	135344211	rs7798256	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	7q33	NR	rs7798256-A	0.126987	6E-21		0.025822	[0.02-0.031] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1617	chr7	135346261	135346262	rs35150201	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	7q33		rs35150201-G	NR	2E-14		0.0134	[0.01-0.017] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
1617	chr7	135346261	135346262	rs35150201	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	7q33		rs35150201-G	NR	4E-15		0.0159	[0.012-0.02] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
1617	chr7	135346261	135346262	rs35150201	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	7q33		rs35150201-G	NR	2E-21		0.0193	[0.015-0.023] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
1617	chr7	135346261	135346262	rs35150201	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	7q33		rs35150201-G	NR	8E-14		0.0124	[0.0091-0.0157] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
1617	chr7	135346261	135346262	rs35150201	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	7q33	C7orf73	rs35150201-G	0.483843	3E-19		0.022015858	[0.017-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1617	chr7	135346261	135346262	rs35150201	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	7q33	C7orf73	rs35150201-G	0.483861	3E-25		0.023318535	[0.019-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
1617	chr7	135346261	135346262	rs35150201	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	7q33	C7orf73	rs35150201-G	0.483358	1E-15		0.0160271	[0.012-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1617	chr7	135346261	135346262	rs35150201	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	7q33	C7orf73	rs35150201-G	0.483367	6E-19		0.01965848	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1617	chr7	135346261	135346262	rs35150201	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q33	NR	rs35150201-T	0.521146	5E-25				Affymetrix, Illumina [17210439] (imputed)	N
1617	chr7	135346261	135346262	rs35150201	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	7q33	NR	rs35150201-T	0.516191	6E-28		0.02103	[0.017-0.025] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1617	chr7	135346261	135346262	rs35150201	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q33	NR	rs35150201-G	0.453548	2E-16				Affymetrix, Illumina [24246363] (imputed)	N
1617	chr7	135346261	135346262	rs35150201	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	7q33	NR	rs35150201-G	0.48279	6E-16		0.014722	[0.011-0.018] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
1617	chr7	135346261	135346262	rs35150201	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q33	NR	rs35150201-G	0.451764	3E-22				Affymetrix, Illumina [20825802] (imputed)	N
1617	chr7	135346261	135346262	rs35150201	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	7q33	NR	rs35150201-G	0.483074	1E-20		0.017981	[0.014-0.022] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
1617	chr7	135346261	135346262	rs35150201	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	7q33		rs35150201-?	NR	2E-18				NR [~ 8900000] (imputed)	N
1617	chr7	135346261	135346262	rs35150201	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	7q33		rs35150201-?	NR	8E-13				NR [~ 8900000] (imputed)	N
1617	chr7	135346261	135346262	rs35150201	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	7q33	C7orf73	rs35150201-G	0.4835	3E-14		0.0280558	[0.021-0.035] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1617	chr7	135346261	135346262	rs35150201	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	7q33	C7orf73	rs35150201-G	0.4835	8E-9		0.02100448	[0.014-0.028] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1617	chr7	135346261	135346262	rs35150201	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	7q33	C7orf73	rs35150201-G	0.4829	3E-9		0.02112326	[0.014-0.028] unit increase	Affymetrix [~ 2500000] (imputed)	N
1617	chr7	135349572	135349573	rs73721673	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	7q33	C7orf73	rs73721673-T	0.12398	6E-15		0.026441205	[0.02-0.033] unit increase	Affymetrix [93095623] (imputed)	N
1617	chr7	135351309	135351310	rs59543286	31624269	Terao C	2019-10-17	Nat Commun	GWAS of mosaic loss of chromosome Y highlights genetic effects on blood cell differentiation.	Mosaic loss of chromosome Y (Y chromosome dosage)	95,380 Japanese men	NA	7q33	C7orf73	rs59543286-C	0.23	8E-32		0.059	NR unit increase	Illumina [9591901] (imputed)	N
1617	chr7	135351309	135351310	rs59543286	31624269	Terao C	2019-10-17	Nat Commun	GWAS of mosaic loss of chromosome Y highlights genetic effects on blood cell differentiation.	Mosaic loss of chromosome Y (Y chromosome dosage)	205,011 men	NA	7q33	C7orf73	rs59543286-A	0.84	2E-38		0.021	unit increase	NR [NR]	N
1617	chr7	135357475	135357476	rs3110823	33385171	Hagg S	2020-12-31	Hum Genet	Deciphering the genetic and epidemiological landscape of mitochondrial DNA abundance.	Mitochondrial DNA levels	295,150 European ancestry individuals	NA	7q33	NR	rs3110823-C	0.1481	2E-17		0.0290802	[0.022-0.036] unit increase	Affymetrix [3505788] (imputed)	N
1617	chr7	135357475	135357476	rs3110823	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	7q33	C7orf73	rs3110823-?	NR	8E-9		0.016623046	[0.011-0.022] unit increase	Illumina [27896057] (imputed)	N
1617	chr7	135364747	135364748	rs56411048	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	7q33		rs56411048-T	0.223546	2E-8		0.0225337	[0.015-0.03] unit decrease	Illumina [13478928] (imputed)	N
1617	chr7	135364747	135364748	rs56411048	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q33	NR	rs56411048-T	0.143341	3E-26				Affymetrix, Illumina [24588908] (imputed)	N
1617	chr7	135396895	135396896	rs3112357	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	7q33	NR	rs3112357-?	NR	5E-6		0.0711	[0.041-0.102] unit decrease	Illumina [at least 560000] (imputed)	N
1618	chr7	135418880	135418881	rs113477191	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	7q33	SLC13A4	rs113477191-T	0.0230171028016553	5E-6		0.0083106	[NR] unit increase	Affymetrix [> 30000000] (imputed)	N
1618	chr7	135423423	135423424	rs6946136	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	7q33	Intergenic	rs6946136-A	0.6092	2E-8	(MTAG)	0.0094	[0.0061-0.0127] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1618	chr7	135423423	135423424	rs6946136	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	7q33		rs6946136-A	0.6116	2E-8		0.0081	[0.0054-0.0108] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1618	chr7	135423423	135423424	rs6946136	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	7q33	Intergenic	rs6946136-A	0.6116	3E-10	(MTAG)	0.0085	[0.006-0.011] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1618	chr7	135439914	135439915	rs10257539	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	7q33		rs10257539-G	0.667328	5E-9		0.0138587635	[0.0092-0.0185] unit decrease	Affymetrix [93095623] (imputed)	N
1618	chr7	135457414	135457415	rs4236659	34130359	Curtis SW	2021-06-15	Genet Epidemiol	FAT4 identified as a potential modifier of orofacial cleft laterality.	Left unilateral cleft lip	68 Asian ancestry cases, 78 European ancestry cases, 70 Hispanic cases, 1,626 controls	NA	7q33	NR	rs4236659-?		1E-7		1.93	[1.51-2.46]	Illumina [539473] (imputed)	N
1618	chr7	135479572	135479573	rs12707249	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	7q33	FAM180A, UNQ1940	rs12707249-A	0.292	3E-6	(GLU )	0.02	[NR] mg/dL increase	Illumina [899892]	N
1618	chr7	135488620	135488621	rs6946494	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue adjusted for BMI	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	7q33	UNQ194	rs6946494-A	0.83	8E-6	(women)			Affymetrix, Illumina [2500000] (imputed)	N
1618	chr7	135501468	135501469	rs13237474	24024966	Teumer A	2013-08-14	J Clin Periodontol	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (CDC/AAP)	up to 3,915 European ancestry individuals	NA	7q33	FAM180A	rs13237474-T	0.03	2E-7	(Age 20-60 years)	3.05	[2.00-4.65]	Affymetrix, Illumina [up to 17585496] (imputed)	N
1618	chr7	135514821	135514822	rs150350251	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	7q33	FAM180A, MTPN, LUZP6, SLC13A4	rs150350251-?		6E-6		2.516356	[1.72-3.70]	Illumina [9389922] (imputed)	N
1619	chr7	135628369	135628370	rs73162998	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	7q33	MTPN	rs73162998-C	0.07605	2E-23		0.042307023	[0.034-0.051] unit decrease	Affymetrix [93095623] (imputed)	N
1619	chr7	135656953	135656967	rs142786982	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	7q33	MTPN	rs142786982-A	0.076525	3E-10		0.026683701	[0.018-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
1620	chr7	135667551	135667552	rs201216548	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	7q33		rs201216548-G	0.072236	5E-14		0.03297566	[0.024-0.042] unit increase	Affymetrix [93095623] (imputed)	N
1620	chr7	135686419	135686420	rs1809626	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	7q33	NR	rs1809626-C	0.81	3E-7	(Japanese, Female)	0.036	[0.022-0.05] unit increase	Illumina [6108953] (imputed)	N
1620	chr7	135718947	135718948	rs1290723	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	7q33	UNQ1940	rs1290723-?	NR	5E-6	(TAG 50:2)	2.80535	[1.6-4.01] unit increase	Affymetrix [at least 2500000] (imputed)	N
1620	chr7	135757694	135757695	rs149098894	28203683	Heit JA	2017-02-16	Thromb Haemost	Identification of unique venous thromboembolism-susceptibility variants in African-Americans.	Venous thromboembolism adjusted for sickle cell variant rs77121243-T	393 African American cases, 4,941 African American controls.	NR	7q33	MTPN	rs149098894-C	0.0109	9E-6		3.667	[2.069-6.499]	Affymetrix, Illumina [14074516] (imputed)	N
1620	chr7	135775847	135775848	rs10265275	29527006	Warrier V	2018-03-12	Transl Psychiatry	Genome-wide analyses of self-reported empathy: correlations with autism, schizophrenia, and anorexia nervosa.	Empathy quotient	22,318 European ancestry males, 24,543 European ancestry females	NA	7q33	AC009784.3	rs10265275-T	0.46764	6E-7	(males)	0.74	[0.45-1.03] unit decrease	Illumina [9955952] (imputed)	N
1621	chr7	135821229	135821233	rs558207711	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference	1,254 whole genome sequenced European ancestry individuals, 3,074 whole genome sequenced individuals, 29,716 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 701 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,050 Mylopotamos (founder/genetic isolate) individuals, 883 Pomak (founder/genetic isolate) individuals	205,909 European ancestry individuals	7q33	AC009784.3	rs558207711-T	0.0094	4E-6		0.284	[0.16-0.41] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1621	chr7	135884570	135884571	rs834811	26114229	Ashley-Koch AE	2015-06-12	J Affect Disord	Genome-wide association study of posttraumatic stress disorder in a cohort of Iraq-Afghanistan era veterans.	Post-traumatic stress disorder	949 non-Hispanic black individuals, 759 European ancestry individuals	NA	7q33	intergenic	rs834811-?	NR	7E-6	AA	1.63	[NR]	Illumina [up to 5616481] (imputed)	N
1621	chr7	135905482	135905483	rs73458677	30796134	Soderholm M	2019-02-22	Neurology	Genome-wide association meta-analysis of functional outcome after ischemic stroke.	3-month functional outcome in ischaemic stroke (modified Rankin score)	6,165 European and unknown ancestry individuals	NA	7q33	Y_RNA	rs73458677-G	0.949	2E-6		1.4925373	[1.33-1.66]	Affymetrix, Illumina [~ 8500000] (imputed)	N
1621	chr7	135914154	135914155	rs112681455	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	7,894 Sub-Saharan African ancestry individuals	NA	7q33		rs112681455-G	0.985305	7E-6		0.0373827	[0.021-0.054] unit decrease	Illumina [13900000] (imputed)	N
1622	chr7	135984671	135984672	rs147981974	33407418	Jonsson A	2021-01-06	BMC Med Genomics	Genome-wide association study of circulating levels of glucagon during an oral glucose tolerance test.	Glucagon levels in response to oral glucose tolerance test (120 minutes)	553 European ancestry individuals, 1,346 individuals	NA	7q33	NR	rs147981974-T	0.014	2E-6		0.7494	[0.44-1.06] unit decrease	Illumina [NR] (imputed)	N
1623	chr7	136070226	136070227	rs141082647	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	7q33	NR	rs141082647-?	NR	1E-6		0.075267	[0.045-0.106] unit increase	Affymetrix [805426] (imputed)	N
1623	chr7	136111670	136111671	rs28463741	28808816	Xu C	2017-08-14	Biogerontology	A genome-wide association study of cognitive function in Chinese adult twins.	Cognitive function	139 Chinese ancestry dizygotic twin pairs	NA	7q33	LOC105375523	rs28463741-?		1E-6				Illumina [1048575]	N
1623	chr7	136146535	136146536	rs10250997	23453885	Smoller JW	2013-02-27	Lancet	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NA	7q33	intergenic	rs10250997-C	NR	8E-6	(5 degree of freedom test)	1.03	[0.99-1.07]	NR [1252901] (imputed)	N
1623	chr7	136152200	136152201	rs62489373	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	7q33	NR	rs62489373-G	NR	4E-6	(GEE model)	1.0309	[0.59-1.47] unit decrease	NR [NR] (imputed)	N
1623	chr7	136161809	136161810	rs6945197	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		7q33	Intergenic	rs6945197-T	0.16	6E-6	(liability model)	0.09	[0.051-0.129] unit increase	NR [19725427] (imputed)	N
1623	chr7	136172772	136172773	rs146885652	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	7q33	AC009541.1, PSMC1P3	rs146885652-A	NR	3E-7	(wake after sleep onset)	0.3099	[0.19-0.43] unit increase	Affymetrix [7141204] (imputed)	N
1624	chr7	136238781	136238782	rs74757156	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	7q33	PSMC1P3	rs74757156-T	NR	2E-6	(sleep efficiency)	6.62	[3.88-9.36] unit decrease	Affymetrix [7141204] (imputed)	N
1624	chr7	136279992	136279993	rs1364745	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	7q33	NR	rs1364745-C	0.181909	2E-8		0.051025767	[0.033-0.069] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1625	chr7	136339926	136339927	rs10244704	33907307	Liu Y	2021-04-27	Int J Obes (Lond)	Genome-wide association study of neck circumference identifies sex-specific loci independent of generalized adiposity.	Neck circumference	6,358 European and African American ancestry women	NA	7q33	NR	rs10244704-?	NR	7E-7		0.3606	NR unit decrease	Affymetrix, Illumina [7322639] (imputed)	N
1625	chr7	136366354	136366355	rs151156903	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	7q33	Intergenic	rs151156903-C	0.994	4E-6	(AA)	1.143	NR unit increase	Illumina [NR] (imputed)	N
1625	chr7	136396860	136396861	rs73157010	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	7q33	Intergenic	rs73157010-C	0.995	5E-6	(AA)	1.171	NR unit increase	Illumina [NR] (imputed)	N
1625	chr7	136428680	136428681	rs73157032	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	7q33	Intergenic	rs73157032-A	0.994	4E-6	(AA)	1.182	NR unit increase	Illumina [NR] (imputed)	N
1625	chr7	136431839	136431840	rs73157036	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	7q33	Intergenic	rs73157036-A	0.994	3E-6	(AA)	1.173	NR unit increase	Illumina [NR] (imputed)	N
1626	chr7	136458045	136458046	rs142021422	32592749	Butler-Laporte G	2020-06-24	Clin Microbiol Infect	Elevated body-mass index is associated with an increased risk of infectious disease admissions and mortality: a mendelian randomization study.	Sepsis (28-day mortality)	210 European ancestry cases, 1,827 European ancestry controls	NA	7q33	AC009264.1	rs142021422-C	0.99	2E-8		0.35	[0.23-0.47] unit decrease	NR [NR]	N
1626	chr7	136519897	136519898	rs201708019	29559693	Zengini E	2018-03-20	Nat Genet	Genome-wide analyses using UK Biobank data provide insights into the genetic architecture of osteoarthritis.	Osteoarthritis (hospital diagnosed)	10,083 European ancestry cases, 40,425 European ancestry controls	18,069 Icelandic ancestry cases, 246,293 Icelandic ancestry controls	7q33	NR	rs201708019-T	0.29899	7E-6		1.0578653	[1.03-1.08]	Affymetrix [16468597] (imputed)	N
1626	chr7	136562780	136562781	rs13233131	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	7q33	CHRM2	rs13233131-A	0.178	8E-10		0.0095	[0.0066-0.0124] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
1626	chr7	136569415	136569416	rs1424569	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	7q33	CHRM2	rs1424569-C	0.53	5E-8		0.36	[0.22-0.5] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1626	chr7	136569415	136569416	rs1424569	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	7q33	CHRM2	rs1424569-C	0.5311	1E-7		0.3591	[0.23-0.49] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1626	chr7	136576099	136576100	rs73158705	29769521	Ramirez J	2018-05-16	Nat Commun	Thirty loci identified for heart rate response to exercise and recovery implicate autonomic nervous system.	Resting heart rate	67,062 European ancestry individuals	NA	7q33	CHRM2	rs73158705-A	0.841336	6E-9		0.512167	[0.34-0.68] unit decrease	Affymetrix [~ 7800000] (imputed)	N
1626	chr7	136576099	136576100	rs73158705	27798624	Eppinga RN	2016-10-31	Nat Genet	Identification of genomic loci associated with resting heart rate and shared genetic predictors with all-cause mortality.	Resting heart rate	127,919 European ancestry individuals, 2,478 Asian ancestry individuals, 1,734 Black individuals, 684 Mixed ancestry individuals, 1,436 individuals	130,795 European ancestry individuals	7q33	CHRM2	rs73158705-G	0.16	3E-18		0.3929	[0.3-0.48] unit increase	Affymetrix [19941912] (imputed)	N
1627	chr7	136584362	136584363	rs1364402	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine with aura	5,118 European ancestry cases, 74,239 European ancestry controls	NA	7q33	intergenic	rs1364402-?	0.91	4E-6		1.19	[1.11-1.28]	Affymetrix, Illumina [~ 2300000] (imputed)	N
1627	chr7	136603315	136603315	rs71784944	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Pulse pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	7q33	chr7mb136	rs71784944-?	0.212859059	3E-7		0.2016	[0.12-0.28] unit decrease	Affymetrix [~ 9800000] (imputed)	N
1627	chr7	136618187	136618188	rs10267979	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	NA	7q33	CHRM2	rs10267979-T	0.6754	2E-9		0.1317	[0.089-0.174] unit increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1627	chr7	136622746	136622747	rs11765746	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	7q33	PTN	rs11765746-?	NR	4E-6	(TAG 56:6)	0.5589343	[0.32-0.8] unit increase	Affymetrix [at least 2500000] (imputed)	N
1627	chr7	136624620	136624621	rs17168815	29497042	Verweij N	2018-03-01	Nat Commun	Genetic study links components of the autonomous nervous system to heart-rate profile during exercise.	Heart rate response to recovery post exercise (50 sec)	5,4137 European ancestry individuals, 1,744 Asian individuals, 1,445 African individuals, 468 admixed individuals, 1,024 individuals	NA	7q33	CHRM2	rs17168815-G	0.844913	1E-14		0.0620875	[0.046-0.078] unit increase	Affymetrix [509255] (imputed)	N
1627	chr7	136624620	136624621	rs17168815	29497042	Verweij N	2018-03-01	Nat Commun	Genetic study links components of the autonomous nervous system to heart-rate profile during exercise.	Heart rate response to recovery post exercise (40 sec)	5,4137 European ancestry individuals, 1,744 Asian individuals, 1,445 African individuals, 468 admixed individuals, 1,024 individuals	NA	7q33	CHRM2	rs17168815-G	0.844943	4E-13		0.0584839	[0.043-0.074] unit increase	Affymetrix [509255] (imputed)	N
1627	chr7	136639435	136639436	rs6943656	29769521	Ramirez J	2018-05-16	Nat Commun	Thirty loci identified for heart rate response to exercise and recovery implicate autonomic nervous system.	Heart rate response to recovery post exercise	up to 35,455 European ancestry females, up to 31,802 European ancestry males	NA	7q33	CHRM2	rs6943656-A	0.842	2E-10		0.47	[0.32-0.62] bpm increase	Affymetrix [~ 7800000] (imputed)	N
1627	chr7	136639435	136639436	rs6943656	29497042	Verweij N	2018-03-01	Nat Commun	Genetic study links components of the autonomous nervous system to heart-rate profile during exercise.	Heart rate response to recovery post exercise (30 sec)	5,4137 European ancestry individuals, 1,744 Asian individuals, 1,445 African individuals, 468 admixed individuals, 1,024 individuals	NA	7q33	CHRM2	rs6943656-A	0.840177	5E-13		0.0577014	[0.042-0.073] unit increase	Affymetrix [509255] (imputed)	N
1627	chr7	136639435	136639436	rs6943656	29497042	Verweij N	2018-03-01	Nat Commun	Genetic study links components of the autonomous nervous system to heart-rate profile during exercise.	Heart rate response to recovery post exercise (20 sec)	5,4137 European ancestry individuals, 1,744 Asian individuals, 1,445 African individuals, 468 admixed individuals, 1,024 individuals	NA	7q33	CHRM2	rs6943656-A	0.840187	6E-12		0.0550069	[0.039-0.071] unit increase	Affymetrix [509255] (imputed)	N
1627	chr7	136642633	136642634	rs2350782	23583979	den Hoed M	2013-04-14	Nat Genet	Identification of heart rate-associated loci and their effects on cardiac conduction and rhythm disorders.	Heart rate	85,787 European ancestry individuals, 6,568 Indian Asian ancestry indiviudals	88,823 European ancestry individuals	7q33	CHRM2	rs2350782-C	0.116	1E-12		0.505	[0.35-0.66] unit increase	Affymetrix, Illumina [2516789] (imputed)	N
1627	chr7	136645906	136645907	rs6952499	29497042	Verweij N	2018-03-01	Nat Commun	Genetic study links components of the autonomous nervous system to heart-rate profile during exercise.	Heart rate response to recovery post exercise (10 sec)	5,4137 European ancestry individuals, 1,744 Asian individuals, 1,445 African individuals, 468 admixed individuals, 1,024 individuals	NA	7q33	CHRM2	rs6952499-G	0.744699	7E-11		0.0437587	[0.031-0.057] unit increase	Affymetrix [509255] (imputed)	N
1628	chr7	136717446	136717447	rs13229637	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	7q33	NA	rs13229637-T	0.8538	2E-10		0.0159	[0.011-0.021] unit increase	NR [~ 27400000] (imputed)	N
1628	chr7	136792770	136792771	rs28590034	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	7q33	NR	rs28590034-?	NR	8E-7		0.0088043	[0.0053-0.0123] unit decrease	Affymetrix [805426] (imputed)	N
1629	chr7	136944231	136944232	rs17169015	29367611	Gao B	2018-01-24	Sci Rep	Genome-wide association study of paclitaxel and carboplatin disposition in women with epithelial ovarian cancer.	Paclitaxel disposition in epithelial ovarian cancer	66 European ancestry cases, 14 Asian ancestry cases	NA	7q33	PTN	rs17169015-?	NR	5E-6		18.28	unit increase (EA, Dutch cohort)	Illumina [610255]	N
1630	chr7	137006968	137006969	rs10251438	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	7q33		rs10251438-A	0.4955	3E-8		0.0078	[0.0051-0.0105] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1630	chr7	137016296	137016297	rs1431093	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	7q33	PTN	rs1431093-A	0.419	8E-19	(Pleiotrophin, PTN.3045.72.2)	0.22	[0.18-0.26] unit increase	Affymetrix [10572788] (imputed)	N
1630	chr7	137018455	137018456	rs322329	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	7q33	PTN	rs322329-G	0.5478125	3E-11	(PTN, 3045_72_2)	0.13331316	[0.094-0.173] unit decrease	Illumina [> 1000000] (imputed)	N
1630	chr7	137024727	137024728	rs140888890	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H measurement	252 European ancestry individuals	NA	7q33		rs140888890-A	NR	4E-6		6.1091	[3.58-8.64] unit decrease	Illumina [NR] (imputed)	N
1630	chr7	137037201	137037202	rs161095	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PTN	5,368 Icelandic ancestry individuals	NA	7q33		rs161095-G	0.4489	4E-17		0.127237	[0.098-0.157] unit increase	Illumina [7506463] (imputed)	N
1630	chr7	137047136	137047137	rs320696	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls	NA	7q33	NR	rs320696-?	NR	3E-9		1.098901		Affymetrix, Illumina [9938587] (imputed)	N
1630	chr7	137049476	137049477	rs320700	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	7q33		rs320700-A	0.6343	2E-8		41.197952	z score increase	NR [6814003]	N
1630	chr7	137049476	137049477	rs320700	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	7q33	ENSG00000228031	rs320700-?	NR	1E-17		0.017973443	[0.014-0.022] unit increase	NR [7306098]	N
1630	chr7	137049476	137049477	rs320700	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	7q33	NR	rs320700-A	0.645	4E-9		0.013670743	NR unit increase	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
1630	chr7	137067615	137067616	rs12534625	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	7q33	DGKI	rs12534625-T	0.6518	7E-14		0.015249436	[0.011-0.019] unit increase	Illumina [9339358] (imputed)	N
1630	chr7	137069054	137069055	rs1669025	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	7q33	DGKI	rs1669025-A	0.507	1E-13		0.0088	[0.0064-0.0112] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
1630	chr7	137070297	137070298	rs7785663	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	67,764 individuals	NA	7q33	NR	rs7785663-?		2E-8				NR [8377093]	N
1630	chr7	137070297	137070298	rs7785663	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	7q33	DGKI, PTN	rs7785663-?		3E-8				NR [6786993] (imputed)	N
1630	chr7	137070297	137070298	rs7785663	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	7q33	NR	rs7785663-?	NR	4E-15		1.0754075	[1.06-1.09]	Affymetrix, Illumina [12447948] (imputed)	N
1630	chr7	137072363	137072364	rs728054	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	7q33		rs728054-A	0.3561	2E-18		0.0128	[0.0099-0.0157] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1630	chr7	137074760	137074761	rs1376608	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Schizophrenia (MTAG)	940,613 European ancestry individuals	NA			rs1376608-?	NR	3E-8				NR [2625067]	N
1630	chr7	137074838	137074839	rs3735026	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	7q33	NR	rs3735026-T	0.359841	5E-11		0.048041075	[0.034-0.062] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1630	chr7	137074843	137074844	rs3735025	31268507	Periyasamy S	2019-07-03	JAMA Psychiatry	Association of Schizophrenia Risk With Disordered Niacin Metabolism in an Indian Genome-wide Association Study.	Schizophrenia	816 Indian ancestry cases, 900 Indian ancestry controls, 505 Indian ancestry cases and 871 Indian ancestry controls from 405 families, up to 36,989 European and unknown ancestry cases, up to 113,075 European and unknown ancestry controls	NA	7q33	NR	rs3735025-?	NR	1E-8				Illumina [up to 5582932] (imputed)	N
1630	chr7	137074843	137074844	rs3735025	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	7q33	DGKI	rs3735025-T	NR	3E-8	(EA)	1.0647	[1.04-1.09]	Illumina [6627481] (imputed)	N
1630	chr7	137074843	137074844	rs3735025	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	7q33	DGKI	rs3735025-T	NR	1E-9		1.062	[1.04-1.08]	Illumina [6627481] (imputed)	N
1630	chr7	137074843	137074844	rs3735025	29483656	Pardinas AF	2018-02-26	Nat Genet	Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.	Schizophrenia	40,675 European ancestry cases, 64,643 European ancestry controls	1,651 European ancestry cases, 4,111 cases, 142,717 European ancestry controls, 11,507 controls	7q33	DGKI, PTN	rs3735025-?	NR	7E-11		1.067	[1.05-1.09]	Illumina [8000000] (imputed)	N
1630	chr7	137074843	137074844	rs3735025	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	7q33	DGKI	rs3735025-T	NR	4E-12		1.068	[1.05-1.09]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1630	chr7	137074843	137074844	rs3735025	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	7q33	DGKI	rs3735025-T		6E-10		1.06	[1.04-1.09]	Affymetrix, Illumina [NR]	N
1630	chr7	137074843	137074844	rs3735025	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	7q33	NR	rs3735025-T	NR	2E-9		1.07	[NR]	Illumina [7158791] (imputed)	N
1630	chr7	137074843	137074844	rs3735025	25056061	Ripke S	2014-07-22	Nature	Biological insights from 108 schizophrenia-associated genetic loci.	Schizophrenia	32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	1,513 European ancestry cases, 66,236 European ancestry controls	7q33	DGKI, PTN	rs3735025-T	0.642	3E-9		1.066	[1.043-1.089]	Affymetrix, Illumina [9005918] (imputed)	N
1630	chr7	137075846	137075847	rs1731951	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	7q33	NR	rs1731951-T	0.5566	1E-8		1.0351967	[1.02-1.05]	Affymetrix, Illumina [NR] (imputed)	N
1630	chr7	137075846	137075847	rs1731951	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	7q33	NA	rs1731951-T	0.56	4E-8	(Female)	1.0416667	[1.03-1.06]	Affymetrix, Illumina [NR] (imputed)	N
1630	chr7	137075846	137075847	rs1731951	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	7q33	PTN	rs1731951-A	0.439961	6E-9		5.82	z score decrease	NR [10847151] (imputed)	N
1630	chr7	137076711	137076712	rs10954580	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs ADHD (ordinary least squares (OLS))	40,675 schizophrenia cases, 19,099 ADHD cases	NA	7q33		rs10954580-?	NR	1E-8		0.0196	NR unit decrease	NR [4428082] (imputed)	N
1630	chr7	137076902	137076903	rs11766321	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Schizophrenia (MTAG)	at least 33,640 European ancestry cases, at least 43,456 European ancestry controls	NA	7q33	NR	rs11766321-T	0.3588	1E-8		0.06468891	[0.042-0.087] unit decrease	NR [NR]	N
1630	chr7	137082038	137082039	rs2241443	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	7q33	Intergenic	rs2241443-T	0.6472	7E-16	(MTAG)	0.0111	[0.0084-0.0138] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1630	chr7	137085979	137085980	rs1376609	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	7q33	NR	rs1376609-?	NR	2E-6		0.0084892	[0.005-0.012] unit increase	Affymetrix [805426] (imputed)	N
1631	chr7	137110408	137110409	rs10233569	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	7q33	MOBP	rs10233569-?		1E-11				NR [7428630] (imputed)	N
1631	chr7	137110408	137110409	rs10233569	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	7q33	DGKI	rs10233569-?		6E-10				NR [7428630] (imputed)	N
1631	chr7	137110984	137110985	rs144804306	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	7q33		rs144804306-A	0.37	4E-11		6.61	z score increase	Affymetrix [9061022] (imputed)	N
1631	chr7	137111391	137111392	rs10237802	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	7q33	NR	rs10237802-G	0.3601	7E-10				NR [9056863] (imputed)	N
1631	chr7	137111790	137111791	rs4728410	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	7q33		rs4728410-C	0.38	2E-52		15.24	z score increase	Affymetrix [9061022] (imputed)	N
1631	chr7	137113974	137113975	rs10257326	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 5)	19,670 European ancestry individuals	NA	7q33		rs10257326-?	NR	8E-11				NR [9705931] (imputed)	N
1631	chr7	137114764	137114765	rs61574089	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	7q33		rs61574089-A	0.36	3E-29		11.23	z score increase	Affymetrix [9061022] (imputed)	N
1631	chr7	137114764	137114765	rs61574089	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	7q33	NR	rs61574089-A	0.3476	1E-17				NR [9056863] (imputed)	N
1631	chr7	137132448	137132449	rs28670044	31626034	Thomsen H	2019-10-11	Melanoma Res	Genome-wide study on uveal melanoma patients finds association to DNA repair gene TDP1.	Presence of epithelioid cells in uveal melanoma	285 European ancestry cases, 286 European ancestry controls	NA	7q33		rs28670044-T	0.53	8E-6		1.78		Illumina [10258281] (imputed)	N
1631	chr7	137143696	137143697	rs571734653	34450027	Boer CG	2021-08-24	Cell	Deciphering osteoarthritis genetics across 826,690 individuals from 9 populations.	Osteoarthritis of the hip or knee	88,842 European ancestry cases, 397,208 European ancestry controls, 899 Japanese ancestry cases, 3,396 Japanese ancestry controls	NA	7q33		rs571734653-A	3.0E-4	6E-9		6.0309224	[3.296426804-11.03377369]	Affymetrix, Illumina [NR] (imputed)	N
1631	chr7	137203818	137203819	rs6467710	21502085	Troyer JL	2011-05-01	J Infect Dis	Genome-wide association study implicates PARD3B-based AIDS restriction.	AIDS progression	755 European ancestry seroconverter cases	NA	7q33	DGKI	rs6467710-?	0.02	6E-7		4.3	[NR]	Affymetrix [700022]	N
1632	chr7	137245498	137245499	rs112391251	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7q33	NR	rs112391251-A	0.01045	1E-8	(GAMT)	0.2005	NR unit increase	Illumina [1671387] (imputed)	N
1632	chr7	137275053	137275054	rs706560	26284813	Hayes MG	2015-08-18	Nat Commun	Genome-wide association of polycystic ovary syndrome implicates alterations in gonadotropin secretion in European ancestry populations.	Testosterone levels in polycystic ovary syndrome	957 European ancestry cases	1,516 European ancestry cases	7q33	DGKI	rs706560-G	0.02	6E-6		33.29	[21.82-44.76] ng/dL increase	Illumina [at least 624044] (imputed)	N
1633	chr7	137404780	137404781	rs10234581	26865924	Lee M	2015-12-21	Nutr Res Pract	Genome-wide association study for the interaction between BMR and BMI in obese Korean women including overweight.	Body mass index	40 Korean ancestry low BMI individuals, 37 Korean ancestry high BMI individuals	NA	7q33	DGKI	rs10234581-C	0.465	2E-6				Affymetrix [at least 710679] (imputed)	N
1633	chr7	137405294	137405295	rs34025316	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	7q33		rs34025316-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1633	chr7	137428826	137428827	rs182144552	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Lean body mass	3,399 whole genome sequenced individuals, 11,801 European ancestry individuals	10,676 European ancestry individuals	7q33	DGKI	rs182144552-T	0.9982	5E-6		0.8602	[0.49-1.23] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1633	chr7	137435924	137435925	rs7802342	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	7q33	NR	rs7802342-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
1633	chr7	137435924	137435925	rs7802342	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	7q33	NA	rs7802342-T	0.7048	6E-11		0.0124	[0.0087-0.0161] unit decrease	NR [~ 27400000] (imputed)	N
1633	chr7	137437155	137437156	rs11976084	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		7q33	DGKI	rs11976084-C	0.712454	2E-8		0.00856668	[0.0056-0.0115] unit decrease	Affymetrix [12370749]	N
1633	chr7	137475096	137475097	rs144684241	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	7q33	NR	rs144684241-?	NR	6E-6		0.0075889	[0.0043-0.0109] unit increase	Affymetrix [805426] (imputed)	N
1634	chr7	137512937	137512938	rs28491578	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	7q33	NR	rs28491578-T	NR	8E-7	(GEE model)	0.82735	[0.5-1.16] unit increase	NR [NR] (imputed)	N
1634	chr7	137529577	137529578	rs6978230	24468470	Zhang C	2013-12-26	Neurobiol Aging	Genetic susceptibility to accelerated cognitive decline in the US Health and Retirement Study.	Cognitive decline (age-related)	5,765 European ancestry individuals, 890 African American individuals	NA	7q33	DGKI	rs6978230-?	NR	6E-6	(EA)	0.024	[0.01369-0.03423] unit decrease	Illumina [1530316]	N
1634	chr7	137559798	137559799	rs73729083	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	LDL cholesterol levels x smoking (ever vs never smokers) interaction (2df test)	11,649 African ancestry ever smoker individuals, 3,999 Asian ancestry ever smoker individuals, 45,506 European ancestry ever smoker individuals, 2,554 Hispanic ever smoker individuals, 11,700 African ancestry never smoker individuals, 9,118 Asian ancestry never smoker individuals, 37,016 European ancestry never smoker individuals, 4,095 Hispanic never smoker individuals	1,693 African ancestry ever smoker individuals, 20,368 Asian ancestry ever smoker individuals, 65,806 European ancestry ever smoker individuals, 6,857 Hispanic ever smoker individuals, 2,025 African ancestry never smoker individuals, 27,981 Asian ancestry never smoker individuals, 51,361 European ancestry never smoker individuals, 10,139 Hispanic never smoker individuals	7q33		rs73729083-C	0.05	1E-14	(African, trans-ethnic)	0.37	[-1.492-2.232] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1634	chr7	137559798	137559799	rs73729083	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	LDL cholesterol levels x smoking (ever vs never smokers) interaction (2df test)	11,649 African ancestry ever smoker individuals, 3,999 Asian ancestry ever smoker individuals, 45,506 European ancestry ever smoker individuals, 2,554 Hispanic ever smoker individuals, 11,700 African ancestry never smoker individuals, 9,118 Asian ancestry never smoker individuals, 37,016 European ancestry never smoker individuals, 4,095 Hispanic never smoker individuals	1,693 African ancestry ever smoker individuals, 20,368 Asian ancestry ever smoker individuals, 65,806 European ancestry ever smoker individuals, 6,857 Hispanic ever smoker individuals, 2,025 African ancestry never smoker individuals, 27,981 Asian ancestry never smoker individuals, 51,361 European ancestry never smoker individuals, 10,139 Hispanic never smoker individuals	7q33		rs73729083-?	NR	6E-10	(African, trans-ethnic)	0.6317	[-1.6321-2.8955] unit increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1634	chr7	137559798	137559799	rs73729083	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	LDL cholesterol levels x smoking (current vs non smokers) interaction (2df test)	4,973 African ancestry current smoker individuals, 2,375 Asian ancestry current smoker individuals, 13,799 European ancestry current smoker individuals, 755 Hispanic current smoker individuals, 18,384 African ancestry non smoker individuals, 10,742 Asian ancestry non smoker individuals, 68,719 European ancestry non smoker individuals, 5,894 Hispanic non smoker individuals	1,357 African ancestry current smoker individuals, 8,901 Asian ancestry current smoker individuals, 25,008 European ancestry current smoker individuals, 3,441 Hispanic current smoker individuals, 3,967 African ancestry non smoker individuals, 39,448 Asian ancestry non smoker individuals, 92,432 European ancestry non smoker individuals, 13,555 Hispanic non smoker individuals	7q33		rs73729083-C	0.05	1E-9	(African, trans-ethnic)			Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1634	chr7	137559798	137559799	rs73729083	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	LDL cholesterol levels in never smokers	11,700 African ancestry individuals, 9,118 Asian ancestry individuals, 37,016 European ancestry individuals, 4,095 Hispanic individuals	NA	7q33		rs73729083-?	NR	4E-6	(African, trans-ethnic)	3.6737	[2.11-5.23] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1634	chr7	137559798	137559799	rs73729083	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	LDL cholesterol levels in ever smokers	11,649 African ancestry individuals, 3,999 Asian ancestry individuals, 45,506 European ancestry individuals, 2,554 Hispanic individuals	NA	7q33		rs73729083-?	NR	1E-6	(African, trans-ethnic)	4.2549	[2.55-5.96] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1634	chr7	137559798	137559799	rs73729083	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	LDL cholesterol levels	up to 23,353 African ancestry individuals, 13,171 Asian ancestry individuals, up to 82,522 European ancestry individuals, 6,646 Hispanic individuals	NA	7q33		rs73729083-?	NR	8E-9	(African, trans-ethnic)	3.5283	[2.33-4.73] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1634	chr7	137559798	137559799	rs73729083	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	7q33	CREB3L2	rs73729083-C	NR	3E-7	(AA)			Affymetrix, Illumina [NR] (imputed)	N
1634	chr7	137559798	137559799	rs73729083	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	7q33	CREB3L2	rs73729083-C	NR	2E-9				Affymetrix, Illumina [NR] (imputed)	N
1634	chr7	137559798	137559799	rs73729083	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	7q33	CREB3L2	rs73729083-C	NR	8E-15				Affymetrix, Illumina [NR] (imputed)	N
1634	chr7	137559798	137559799	rs73729083	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	7q33	CREB3L2	rs73729083-C	NR	3E-10	(AA)			Affymetrix, Illumina [NR] (imputed)	N
1634	chr7	137559798	137559799	rs73729083	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	7q33	CREB3L2	rs73729083-C	NR	8E-8		3.668	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1634	chr7	137559798	137559799	rs73729083	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	7q33	CREB3L2	rs73729083-C	NR	6E-7	(AA)	3.861	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1634	chr7	137559798	137559799	rs73729083	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	7q33	CREB3L2	rs73729083-C	NR	9E-8		4.009	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1634	chr7	137559798	137559799	rs73729083	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	7q33	CREB3L2	rs73729083-C	NR	2E-6	(AA)	4.197	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1634	chr7	137562667	137562668	rs73729087	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	7q33	CREB3L2	rs73729087-?	NR	2E-8		4.695	[3.07-6.32] unit decrease	Illumina [32003504] (imputed)	N
1634	chr7	137562667	137562668	rs73729087	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	7q33	CREB3L2	rs73729087-?	NR	2E-6	(AA)	5.072537	[2.99-7.15] unit decrease	Illumina [32003504] (imputed)	N
1634	chr7	137583919	137583920	rs1677498	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	7q33	NR	rs1677498-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
1634	chr7	137589584	137589584	rs543860487	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	7q33	CREB3L2	rs543860487-G	0.422458	2E-7	(females)	0.01234	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1634	chr7	137589584	137589584	rs543860487	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	7q33	CREB3L2	rs543860487-G	0.422458	1E-6		0.01031	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1634	chr7	137590863	137590864	rs273966	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	7q33		rs273966-C	0.859921	5E-12		0.019967	[0.014-0.026] unit increase	Illumina [13479295] (imputed)	N
1634	chr7	137590863	137590864	rs273966	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	7q33	CREB3L2	rs273966-?	NR	4E-11		0.02708635	[0.019-0.035] unit increase	Illumina [27896057] (imputed)	N
1634	chr7	137592015	137592016	rs273965	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	7q33		rs273965-C	NR	1E-8		0.0126	[0.0083-0.0169] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
1634	chr7	137597004	137597005	rs273960	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	7q33	CREB3L2	rs273960-T	0.38373	2E-12		0.0015988	[0.0011-0.0021] unit decrease	Affymetrix [13995440] (imputed)	N
1634	chr7	137599374	137599375	rs273958	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	7q33	NR	rs273958-?	NR	2E-18				Affymetrix [~ 8270000] (imputed)	N
1634	chr7	137600689	137600690	rs273957	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	7q33		rs273957-T	NR	2E-17		0.0129	[0.01-0.0158] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1634	chr7	137600689	137600690	rs273957	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	7q33	CREB3L2	rs273957-C	0.384703	1E-10		0.014743234	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
1634	chr7	137600689	137600690	rs273957	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	7q33	CREB3L2	rs273957-C		3E-8		0.147	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1634	chr7	137603979	137603980	rs273953	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	7q33	CREB3L2	rs273953-T	NR	2E-12		0.0207525	[0.015-0.027] unit decrease	Affymetrix [321114] (imputed)	N
1634	chr7	137603979	137603980	rs273953	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	7q33	CREB3L2	rs273953-T	NR	3E-8		0.0163847	[0.011-0.022] unit decrease	Affymetrix [321169] (imputed)	N
1634	chr7	137604834	137604835	rs1646555	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	7q33	CREB3L2	rs1646555-?		2E-9				Affymetrix, Illumina [NR] (imputed)	N
1634	chr7	137611295	137611296	rs273946	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	7q33	CREB3L2	rs273946-G	NR	6E-9		0.017962	[0.012-0.024] unit decrease	Affymetrix [323123] (imputed)	N
1634	chr7	137611565	137611566	rs273945	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	7q33	NR	rs273945-C	NR	6E-13		0.0175	[0.013-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
1634	chr7	137611565	137611566	rs273945	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7q33		rs273945-?	NR	9E-26				NR [~ 8900000] (imputed)	N
1634	chr7	137614546	137614547	rs200716	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	7q33	CREB3L2	rs200716-A	NR	8E-10		0.0197372	[0.013-0.026] unit decrease	Affymetrix [321114] (imputed)	N
1634	chr7	137614568	137614569	rs7795277	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	7q33	CREB3L2	rs7795277-G	NR	1E-8		0.0163283	[0.011-0.022] unit increase	Affymetrix [321114] (imputed)	N
1635	chr7	137626287	137626288	rs273990	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	7q33	NR	rs273990-?	NR	4E-12				Affymetrix [~ 8270000] (imputed)	N
1635	chr7	137664770	137664771	rs6948022	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 60)	3,566 European ancestry individuals	4,680 European ancestry individuals	7q33		rs6948022-T	0.121845205	6E-9				Illumina [7417619] (imputed)	N
1635	chr7	137722565	137722566	rs146421862	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	7q33	NR	rs146421862-?	NR	4E-8				Illumina [7760689] (imputed)	N
1636	chr7	137788491	137788492	rs6980334	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite ratios	Up to 5,591 European ancestry individuals	Up to 1,767 European ancestry individuals	7q33	AKR1D1	rs6980334-A	0.76	4E-20	(X-12095--N1-methyl-3-pyridone-4-carboxamide/X-12844)	0.038	[0.030-0.046] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
1636	chr7	137798592	137798593	rs2306847	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	7q33	NR	rs2306847-T	0.791144	5E-34		0.0189427	[0.016-0.022] unit increase	Affymetrix [16578495] (imputed)	N
1636	chr7	137799568	137799569	rs2035647	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	7q33	AKR1D1	rs2035647-A	0.21	2E-17	(X-12844)	0.029	[0.023-0.035] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
1636	chr7	137801443	137801444	rs1872930	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	7q33	NR	rs1872930-T	0.792539	2E-54		0.0514302	[0.045-0.058] unit increase	Affymetrix [16580851] (imputed)	N
1636	chr7	137801914	137801915	rs7780066	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Testosterone levels	310,461 European ancestry individuals, 5,453 African ancestry individuals, 6,680 South Asian ancestry individuals	NA	7q33	NR	rs7780066-A	NR	8E-19		0.0274	[0.021-0.033] unit increase	Affymetrix [9000000] (imputed)	N
1636	chr7	137801914	137801915	rs7780066	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	7q33	NR	rs7780066-A	0.792599	3E-8		0.0134951	[0.0087-0.0183] unit increase	Affymetrix [16583148] (imputed)	N
1636	chr7	137801914	137801915	rs7780066	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	7q33	NR	rs7780066-A	0.793042	3E-13		0.0227824	[0.017-0.029] unit increase	Affymetrix [16585745] (imputed)	N
1636	chr7	137802891	137802892	rs17169523	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	7q33	CREB3L2	rs17169523-?	NR	5E-6	(LPC 20:5)	1.7786689	[1.02-2.54] unit increase	Affymetrix [at least 2500000] (imputed)	N
1636	chr7	137803647	137803648	rs181525252	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental longevity (combined parental age at death)	45,627 middle-aged British individuals	NA	7q33	NR	rs181525252-?	NR	6E-6		0.14264	[0.081-0.205] unit decrease	Affymetrix [9658292] (imputed)	N
1636	chr7	137858765	137858766	rs10255295	23453885	Smoller JW	2013-02-27	Lancet	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NA	7q33	intergenic	rs10255295-A		5E-6	(Modelling analysis)	1.1	[1.06-1.14]	NR [1252901] (imputed)	N
1636	chr7	137858765	137858766	rs10255295	23092984	Goes FS	2012-10-23	Transl Psychiatry	Genome-wide association of mood-incongruent psychotic bipolar disorder.	Bipolar disorder with mood-incongruent psychosis	2,196 European and other ancestry cases, 8,148 European and other ancestry controls	NA	7q33	AKR1D1	rs10255295-G	NR	5E-6		1.31	[NR]	Affymetrix, Illumina [~ 2500000] (imputed)	N
1636	chr7	137866369	137866370	rs2589998	26718567	Williams SR	2015-12-30	Neurology	Shared genetic susceptibility of vascular-related biomarkers with ischemic and recurrent stroke.	C-reactive protein levels in ischemic stroke	up to 1,725 European ancestry cases, up to 258 African ancestry cases, up to 117 cases	NA	7q33	AKR1D1	rs2589998-A	0.26	7E-8				Illumina [7500450] (imputed)	N
1636	chr7	137874608	137874609	rs190763987	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	7q33	AKR1D1	rs190763987-T	0.0106445032540384	3E-6	(O_Lactobacillales_HB)	1.40146	[0.81-1.99] unit decrease	Illumina [7711310] (imputed)	N
1636	chr7	137879379	137879380	rs1973326	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	7q33		rs1973326-C	NR	2E-25		0.0244	[0.02-0.029] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
1636	chr7	137879427	137879428	rs1973325	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	7q33		rs1973325-A	0.308158	4E-34		0.029349208	[0.025-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
1636	chr7	137879427	137879428	rs1973325	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q33	NR	rs1973325-G	0.717359	9E-36				Affymetrix, Illumina [23467995] (imputed)	N
1636	chr7	137879847	137879848	rs1552583	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	7q33		rs1552583-G	0.316	2E-9				Affymetrix [10369434] (imputed)	N
1636	chr7	137881689	137881690	rs7785014	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	7q33		rs7785014-C	0.67235	2E-31		0.027597535	[0.023-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
1636	chr7	137881689	137881690	rs7785014	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	7q33	NR	rs7785014-C	0.670805	2E-36		0.025276	[0.021-0.029] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1636	chr7	137881689	137881690	rs7785014	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	7q33	intergenic	rs7785014-C	0.6715	3E-11		0.02536498	[0.018-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1636	chr7	137881689	137881690	rs7785014	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	7q33	intergenic	rs7785014-C	0.6716	3E-11		0.0254158	[0.018-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1636	chr7	137881689	137881690	rs7785014	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	7q33	intergenic	rs7785014-C	0.6715	2E-10		0.02435289	[0.017-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
1637	chr7	137942778	137942779	rs74621719	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	7q33		rs74621719-A	0.173589	8E-11		0.01891577	[0.013-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1637	chr7	137942778	137942779	rs74621719	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q33	NR	rs74621719-A	0.162423	7E-12				Affymetrix, Illumina [23114412] (imputed)	N
1637	chr7	137942778	137942779	rs74621719	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	7q33	NR	rs74621719-A	0.174957	2E-11		0.017093	[0.012-0.022] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
1637	chr7	137962185	137962186	rs11763343	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	7q33	intergenic	rs11763343-A	NR	7E-6				Illumina [up to 11995908] (imputed)	N
1638	chr7	138020997	138020998	rs357444	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,931 Sub-Saharan African ancestry males	NA	7q33		rs357444-A	0.409311	6E-6		0.0123291	[0.007-0.0177] unit decrease	Illumina [13900000] (imputed)	N
1638	chr7	138023287	138023288	rs357438	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	7q33	NR	rs357438-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
1638	chr7	138023287	138023288	rs357438	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	7q33	NR	rs357438-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1638	chr7	138023287	138023288	rs357438	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	7q33		rs357438-?	NR	7E-10				NR [~ 8900000] (imputed)	N
1638	chr7	138033196	138033197	rs357422	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	7q33		rs357422-A	NR	3E-9		0.0128	[0.0085-0.0171] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
1638	chr7	138049386	138049387	rs357394	17903307	Wilk JB	2007-09-19	BMC Med Genet	Framingham Heart Study genome-wide association: results for pulmonary function measures.	Pulmonary function	Up to 1,222 individuals	NA	7q33	intergenic	rs357394-?	NR	9E-6	(ppFVC)			Affymetrix [70897]	N
1638	chr7	138073061	138073062	rs79987021	29077507	Chen H	2017-10-27	Am J Respir Cell Mol Biol	Multi-ethnic Meta-analysis Identifies RAI1 as a Possible Obstructive Sleep Apnea Related Quantitative Trait Locus in Men.	Obstructive sleep apnea trait (apnea hypopnea index)	677 African American women, 544 African American men, 115 Asian women, 113 Asian men, 1,825 European ancestry women, 3,902 European ancestry men,  7,492 Hispanic women, 5,065 Hispanic men	NA	7q33	Intergenic	rs79987021-T		6E-7		0.256	[NR] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1638	chr7	138091838	138091839	rs4732313	33594131	Donati G	2021-02-16	Sci Rep	Evidence for specificity of polygenic contributions to attainment in English, maths and science during adolescence.	Academic attainment (maths)	6,017 European ancestry adolescents	NA	7q33	NR	rs4732313-C	NR	4E-6		0.256	[0.14-0.37] unit increase	Illumina [6319684] (imputed)	N
1638	chr7	138116702	138116702	rs763863569	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Stevens-Johnson syndrome	312 European ancestry cases, 483,011 European ancestry controls, 93 East Asian ancestry cases, 171,753 East Asian ancestry controls	NA	7q33		rs763863569-AT	NR	2E-8		6.4675	[4.22-8.71] unit increase	Affymetrix, Illumina [25844251] (imputed)	N
1638	chr7	138132574	138132575	rs34698639	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	7q33		rs34698639-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1638	chr7	138138540	138138540	rs398048155	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7q33	NR	rs398048155-T	0.3084	6E-11	(CORO1A)	0.02637	NR unit increase	Illumina [1671387] (imputed)	N
1638	chr7	138138540	138138540	rs398048155	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7q33	NR	rs398048155-T	0.3084	1E-9	(RAC2)	0.003297	NR unit increase	Illumina [1671387] (imputed)	N
1639	chr7	138157078	138157079	rs749546	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7q33	NR	rs749546-A	0.2997	9E-11	(RAC2)	0.003441	NR unit increase	Illumina [1671387] (imputed)	N
1639	chr7	138157078	138157079	rs749546	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7q33	NR	rs749546-A	0.2997	6E-10	(CORO1A)	0.02466	NR unit increase	Illumina [1671387] (imputed)	N
1639	chr7	138157389	138157390	rs1874326	19197348	Lowe JK	2009-02-06	PLoS Genet	Genome-wide association studies in an isolated founder population from the Pacific Island of Kosrae.	Quantitative traits	2,906 Kosraen individuals	NA	7q33	TRIM24	rs1874326-G	0.47	9E-6	(weight)	0.22	[NR] lb. increase	Affymetrix [408775]	N
1639	chr7	138169209	138169210	rs11976614	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7q33	NR	rs11976614-T	0.3659	5E-9	(RAC2)	0.002976	NR unit increase	Illumina [1671387] (imputed)	N
1639	chr7	138169209	138169210	rs11976614	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7q33	NR	rs11976614-T	0.3659	5E-9	(CORO1A)	0.0223	NR unit increase	Illumina [1671387] (imputed)	N
1639	chr7	138195279	138195280	rs7806963	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	7q34		rs7806963-T	0.35	2E-8		5.61	z score increase	Affymetrix [9061022] (imputed)	N
1640	chr7	138281354	138281355	rs1659832	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7q34	NR	rs1659832-A	0.277	1E-9	(RAC2)	0.003321	NR unit increase	Illumina [1671387] (imputed)	N
1640	chr7	138351800	138351801	rs28625106	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial squamous cell lung carcinoma	367 European ancestry cases, 31,563 European ancestry controls	NA	7q34	SVOPL	rs28625106-A	0.041	5E-6		2.46	[1.67-3.63]	Illumina [7959153] (imputed)	N
1640	chr7	138377804	138377805	rs296917	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels	3,806 African American individuals	NA	7q34		rs296917-?	NR	1E-6		0.12	[0.069-0.171] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1640	chr7	138411424	138411425	rs3800569	21326311	Bhatnagar P	2011-02-17	J Hum Genet	Genome-wide association study identifies genetic variants influencing F-cell levels in sickle-cell patients.	F-cell distribution in sickle cell anaemia	440 African American individuals	NA	7q34	ATP6V0A4	rs3800569-C	0.13	6E-6		1.2	[0.69-1.71] unit increase	Illumina [660740]	N
1641	chr7	138455107	138455108	rs7799249	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x long total sleep time interaction (2df test)	2,933 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, up to 7,870 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,975 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 32,171 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 616 East Asian ancestry long sleepers, up to 9,486 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 929 African American controls, 2,517 East Asian ancestry controls, up to 38,126 European ancestry controls, 10,063 Hispanic controls	7q34	ATP6V0A4	rs7799249-?	NR	4E-10		0.003782	[0.0015-0.006] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
1641	chr7	138455107	138455108	rs7799249	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x long total sleep time interaction (2df test)	2,933 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, up to 7,870 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,975 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 32,171 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 616 East Asian ancestry long sleepers, up to 9,486 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 929 African American controls, 2,517 East Asian ancestry controls, up to 38,126 European ancestry controls, 10,063 Hispanic controls	7q34	ATP6V0A4	rs7799249-?	NR	3E-8	(EA)	0.004049	[0.0016-0.0065] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
1641	chr7	138487144	138487145	rs2354376	34108613	Ivarsdottir EV	2021-06-09	Commun Biol	The genetic architecture of age-related hearing impairment revealed by genome-wide association analysis.	Age-related hearing impairment	121,934 European ancestry cases, 591,699 European ancestry controls	NA	7q34	ATP6V0A4	rs2354376-C	39.26	1E-10	(additive)	0.97	[NR]	Affymetrix, Illumina [46900000] (imputed)	N
1641	chr7	138491838	138491839	rs4732339	32986727	Kalra G	2020-09-28	PLoS Genet	Biological insights from multi-omic analysis of 31 genomic risk loci for adult hearing difficulty.	Age-related hearing impairment (MTAG)	330,759 European ancestry individuals	NA	7q34		rs4732339-?	NR	2E-8		5.574441	z score increase	Affymetrix [NR] (imputed)	N
1642	chr7	138666955	138666955	rs34760444	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	7q34		rs34760444-?	NR	2E-14		0.0180849	[0.013-0.023] unit increase	Affymetrix [20259828] (imputed)	N
1642	chr7	138667220	138667221	rs28498618	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	7q34	KIAA1549	rs28498618-G	0.789883	4E-18		0.0194204	[0.015-0.024] unit increase	NR [13737936] (imputed)	N
1642	chr7	138667787	138667788	rs6977460	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	7q34		rs6977460-?	NR	3E-15				NR [~ 8900000] (imputed)	N
1643	chr7	138697199	138697200	rs77301145	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (PANSS score)	1,390 European ancestry individuals	NA	7q34		rs77301145-C	NR	8E-6	(GLM)	8.4108	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
1643	chr7	138717962	138717962	rs11407391	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	7q34	NR	rs11407391-I	0.513769	2E-10		0.012857	[0.0089-0.0168] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1643	chr7	138721867	138721868	rs3907703	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	7q34	ZC3HAV1L	rs3907703-A	0.50678	5E-10		0.013898598	[0.0095-0.0183] unit increase	Affymetrix [93095623] (imputed)	N
1643	chr7	138721939	138721940	rs3847126	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	7q34	ZC3HAV1L	rs3847126-A	0.506791	4E-12		0.015415966	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1643	chr7	138722103	138722104	rs1394491	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	7q34	ZC3HAV1L	rs1394491-C	0.499117	6E-9		0.01305634	[0.0087-0.0174] unit increase	Affymetrix [93095623] (imputed)	N
1643	chr7	138722103	138722104	rs1394491	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	7q34	ZC3HAV1L	rs1394491-C	0.49909	2E-10		0.014227321	[0.0099-0.0186] unit increase	Affymetrix [93095623] (imputed)	N
1643	chr7	138729544	138729547	rs370193557	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	8,021 European ancestry cases, 16,489 European ancestry controls, 2,495 East Asian ancestry cases, 4,283 East Asian ancestry controls	NA	7q34		rs370193557-G	NR	9E-10		0.120981	[0.082-0.16] unit decrease	NR [2787054] (imputed)	N
1643	chr7	138729544	138729547	rs370193557	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	8,021 European ancestry cases, 16,489 European ancestry controls	NA	7q34		rs370193557-GAAT	NR	2E-8		0.121991	[0.079-0.165] unit increase	NR [5054572] (imputed)	N
1643	chr7	138729794	138729795	rs10271373	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	7q34	ZC3HAV1	rs10271373-A	NR	3E-9		1.0571942	NR	Affymetrix, Illumina [8278136] (imputed)	N
1643	chr7	138732496	138732497	rs3735007	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q34	NR	rs3735007-A	0.470249	2E-10				Affymetrix, Illumina [24649327] (imputed)	N
1643	chr7	138735511	138735512	rs10273974	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	7q34		rs10273974-C	NR	2E-8		0.0109	[0.0072-0.0146] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1643	chr7	138735511	138735512	rs10273974	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	7q34	ZC3HAV1	rs10273974-C	0.489407	4E-9		0.012995858	[0.0087-0.0173] unit decrease	Affymetrix [93095623] (imputed)	N
1643	chr7	138735511	138735512	rs10273974	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	7q34	ZC3HAV1	rs10273974-C	0.489399	6E-19		0.020021386	[0.016-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1643	chr7	138735511	138735512	rs10273974	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	7q34	ZC3HAV1	rs10273974-C	0.48941	7E-11		0.0146638835	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
1643	chr7	138735511	138735512	rs10273974	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	7q34	NR	rs10273974-C	0.491442	2E-11		0.012359	[0.0088-0.016] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1643	chr7	138735511	138735512	rs10273974	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q34	NR	rs10273974-C	0.458184	2E-13				Affymetrix, Illumina [24588908] (imputed)	N
1643	chr7	138735511	138735512	rs10273974	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	7q34	NR	rs10273974-C	0.491526	3E-13		0.01337	[0.0098-0.017] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1643	chr7	138735511	138735512	rs10273974	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	7q34		rs10273974-?	NR	8E-9				NR [~ 8900000] (imputed)	N
1643	chr7	138740036	138740037	rs2297236	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q34	NR	rs2297236-C	0.556197	7E-22				Affymetrix, Illumina [23472807] (imputed)	N
1643	chr7	138741585	138741586	rs62485905	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	7q34		rs62485905-T	NR	6E-14		0.0161	[0.012-0.02] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
1643	chr7	138741585	138741586	rs62485905	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	7q34	ZC3HAV1	rs62485905-T	0.55094	2E-16		0.018393714	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1643	chr7	138741585	138741586	rs62485905	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	7q34	NR	rs62485905-T	0.551492	2E-20		0.0177	[0.014-0.021] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1643	chr7	138780349	138780350	rs6975036	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	7q34	ZC3HAV1	rs6975036-A	0.217814	8E-17		0.02228705	[0.017-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1643	chr7	138782339	138782340	rs62485915	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	7q34		rs62485915-C	NR	1E-8		0.011	[0.0073-0.0147] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
1643	chr7	138787194	138787195	rs6945954	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	7q34	ZC3HAV1	rs6945954-A	0.219124	5E-12		0.01841029	[0.013-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1643	chr7	138787194	138787195	rs6945954	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	7q34		rs6945954-?	NR	5E-12				NR [~ 8900000] (imputed)	N
1643	chr7	138788794	138788795	rs7789337	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q34	NR	rs7789337-C	0.26833	3E-13				Affymetrix, Illumina [19872809] (imputed)	N
1643	chr7	138788794	138788795	rs7789337	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	7q34	NR	rs7789337-C	0.217876	1E-14		0.018512	[0.014-0.023] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
1644	chr7	138817192	138817193	rs11525873	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	7q34		rs11525873-C	NR	8E-11		0.0165	[0.012-0.021] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1644	chr7	138817192	138817193	rs11525873	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	7q34	TTC26	rs11525873-T	0.902215	1E-13		0.0175009	[0.013-0.022] unit increase	Affymetrix [12370749]	N
1644	chr7	138817192	138817193	rs11525873	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		7q34	TTC26	rs11525873-T	0.902215	1E-10		0.014829	[0.01-0.019] unit increase	Affymetrix [12370749]	N
1644	chr7	138817192	138817193	rs11525873	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	7q34	NR	rs11525873-?	NR	4E-13				Affymetrix [~ 8270000] (imputed)	N
1644	chr7	138817192	138817193	rs11525873	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	7q34		rs11525873-?	NR	3E-13				NR [~ 8900000] (imputed)	N
1644	chr7	138817192	138817193	rs11525873	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	7q34	NA	rs11525873-T	0.8995	3E-13		0.0232	[0.017-0.029] unit increase	NR [~ 27400000] (imputed)	N
1644	chr7	138850966	138850967	rs60580184	25820613	Warrington NM	2015-03-27	Hum Mol Genet	Genome-wide association study of blood lead shows multiple associations near ALAD.	Lead levels in blood	5,433 individuals	NA	7q34	TTC26	rs60580184-A	0.025	1E-7		0.34	[0.18-0.5] unit increase	Illumina [6391392] (imputed)	N
1644	chr7	138874415	138874416	rs13233916	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	7q34		rs13233916-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1645	chr7	139006962	139006963	rs7786820	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	7q34	NR	rs7786820-?	NR	6E-10				Affymetrix [~ 8270000] (imputed)	N
1645	chr7	139040257	139040258	rs11971779	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	7q34	FMC1, LUC7L2	rs11971779-A	0.169	1E-6		2.43	[1.69-3.5]	Illumina [1556551]	N
1646	chr7	139099812	139099813	rs144567740	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Left ventricular end-systolic volume (MTAG)	19,260 European ancestry individuals	NA	7q34	LUC7L2	rs144567740-G	0.1964	2E-6		0.8296	[0.49-1.17] unit increase	Affymetrix [~ 9500000] (imputed)	N
1646	chr7	139099812	139099813	rs144567740	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Left ventricular end-diastolic volume (MTAG)	19,260 European ancestry individuals	NA	7q34	LUC7L2	rs144567740-G	0.1964	2E-8		1.6761	[1.09-2.26] unit increase	Affymetrix [~ 9500000] (imputed)	N
1646	chr7	139099812	139099813	rs144567740	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	7q34	C7orf55-LUC7L2	rs144567740-T	0.805002	3E-8		0.0139604	[0.0091-0.0189] unit decrease	Affymetrix [NR] (imputed)	N
1646	chr7	139144850	139144851	rs140100805	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Strep throat	52,487 European ancestry cases, 22,017 European ancestry controls	NA	7q34	NR	rs140100805-?	NR	4E-6		0.1298	[0.075-0.185] unit increase	Illumina [at least 560000] (imputed)	N
1647	chr7	139240470	139240471	rs4732386	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	7q34		rs4732386-C	0.39	9E-11		6.48	z score increase	Affymetrix [9061022] (imputed)	N
1647	chr7	139252779	139252780	rs1638195	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 79)	19,670 European ancestry individuals	NA	7q34		rs1638195-?	NR	1E-11				NR [9705931] (imputed)	N
1647	chr7	139326551	139326552	rs10954650	26980576	Kim K	2016-03-15	J Rheumatol	Response to Intravenous Cyclophosphamide Treatment for Lupus Nephritis Associated with Polymorphisms in the FCGR2B-FCRLA Locus.	Response to cyclophosphamide in systemic lupus erythematosus with lupus nephritis	93 Korean ancestry responder cases, 16 Korean ancestry non-responder cases	NA	7q34	HIPK2	rs10954650-?	NR	6E-6				Illumina [491617]	N
1648	chr7	139372965	139372966	rs9690295	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Neuroticism	170,911 European ancestry individuals	NA	7q34	NR	rs9690295-T	0.553	2E-6		0.017012898	[0.01-0.024] unit decrease	Affymetrix [up to 6544775] (imputed)	N
1648	chr7	139404665	139404666	rs141212865	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	7q34		rs141212865-?	NR	2E-12				NR [~ 8900000] (imputed)	N
1648	chr7	139407000	139407001	rs36144291	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	7q34		rs36144291-C	NR	5E-11		0.0147	[0.01-0.019] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1648	chr7	139407000	139407001	rs36144291	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	7q34		rs36144291-C	NR	5E-9		0.0133	[0.0088-0.0178] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
1648	chr7	139459894	139459895	rs4726459	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	7q34	NR	rs4726459-A	0.7101	9E-10	(East Asian)	0.4391	[0.3-0.58] unit increase	Illumina [6200000] (imputed)	N
1648	chr7	139459894	139459895	rs4726459	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	7q34	NR	rs4726459-A	0.7101	7E-9	(East Asian)	0.2926	[0.19-0.39] unit increase	Illumina [6200000] (imputed)	N
1649	chr7	139463263	139463264	rs1011018	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Systolic blood pressure	140,882 European ancestry individuals	190,318 European ancestry individuals	7q34	HIPK2	rs1011018-A	0.2	2E-8		0.329	[0.21-0.45] unit decrease	Affymetrix [~ 9800000] (imputed)	N
1649	chr7	139467675	139467676	rs28656273	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	7q34		rs28656273-C	NR	3E-8		0.0322	[0.021-0.044] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1649	chr7	139467675	139467676	rs28656273	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	7q34		rs28656273-?	NR	7E-11				NR [~ 8900000] (imputed)	N
1649	chr7	139478174	139478175	rs1860509	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	7q34		rs1860509-G	NR	2E-9		0.0133	[0.009-0.0176] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
1649	chr7	139478174	139478175	rs1860509	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	7q34	TBXAS1	rs1860509-G	0.7757	1E-9		0.268	[0.18-0.35] mmHg increase	Affymetrix [NR] (imputed)	N
1649	chr7	139506579	139506580	rs10277664	24086445	Wang Q	2013-09-24	PLoS One	Genome-wide association analysis with gray matter volume as a quantitative phenotype in first-episode treatment-naive patients with schizophrenia.	Gray matter volume (schizophrenia interaction)	74 Han Chinese ancestry cases, 51 Han Chinese ancestry controls	NA	7q34	TBXAS1	rs10277664-?	NR	1E-7		0.0432	[NR] unit decrease	NR [1983054] (imputed)	N
1649	chr7	139507567	139507568	rs6951759	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	7q34	TBXAS1	rs6951759-?	NR	4E-9		0.045	[0.029-0.061] unit increase	Illumina [34656550] (imputed)	N
1649	chr7	139507567	139507568	rs6951759	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	7q34	TBXAS1	rs6951759-?	NR	2E-7	(AA)	0.08395143	[0.052-0.116] unit increase	Illumina [34656550] (imputed)	N
1649	chr7	139521461	139521462	rs17161157	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7q34	NR	rs17161157-T	0.01742	2E-8	(RAB14)	0.02147	NR unit increase	Illumina [1671387] (imputed)	N
1649	chr7	139539104	139539105	rs8192803	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	7q34	TBXAS1	rs8192803-G	0.598662	2E-9		0.0111358	[0.0075-0.0148] unit decrease	NR [13737936] (imputed)	N
1649	chr7	139540934	139540935	rs2267681	28806749	Leo PJ	2017-08-14	PLoS Genet	Defining the genetic susceptibility to cervical neoplasia-A genome-wide association study.	Cervical cancer	2,866 European ancestry cases, 6,481 European ancestry controls	NA	7q34	TBXAS1	rs2267681-?	NR	2E-6		1.1806375	[NR]	Illumina [10863230] (imputed)	N
1649	chr7	139557946	139557947	rs194151	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	7q34	TBXAS1	rs194151-A	0.42	9E-6	(Bike energy expenditure )	0.03	[NR] kcal/min increase	Illumina [899892]	N
1650	chr7	139591859	139591860	rs7810727	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine without aura	7,107 European ancestry cases, 69,427 European ancestry controls	NA	7q34	intergenic	rs7810727-T	0.31	8E-6		1.11	[1.06-1.16]	Affymetrix, Illumina [~ 2300000] (imputed)	N
1650	chr7	139593025	139593026	rs4726434	29682794	Szekely E	2018-04-22	Genet Epidemiol	Genetic associations with childhood brain growth, defined in two longitudinal cohorts.	Cerebellum growth	581 European ancestry individuals, 31 African American individuals, 8 Asian American individuals, 15 admixed individuals, 80 other ancestries individuals	NA	7q34	TBXAS1	rs4726434-?	NR	4E-6				Illumina [at least 653030]	N
1650	chr7	139642047	139642048	rs192232892	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		7q34	TBXAS1	rs192232892-T	0.002	3E-6	(liability model)	0.99	[0.58-1.4] unit increase	NR [19725427] (imputed)	N
1650	chr7	139671116	139671117	rs6962291	26305897	Iyengar SK	2015-08-25	PLoS Genet	Genome-Wide Association and Trans-ethnic Meta-Analysis for Advanced Diabetic Kidney Disease: Family Investigation of Nephropathy and Diabetes (FIND).	Diabetic kidney disease	up to 1,564 African American cases, 369  African American diabetic controls, 1,288 African American non-diabetic controls, 538 American Indian ancestry cases, 319 American Indian ancestry diabetic controls, 342 European ancestry cases, 404 European ancestry diabetic controls, 779 Mexican ancestry cases, 594 Mexican ancestry diabetic controls	NA	7q34	NR	rs6962291-?	0.6	5E-6	(African American, additive)	1.3888888	[1.2-1.61]	Affymetrix [NR]	N
1650	chr7	139687303	139687304	rs8192851	24529757	Xie T	2014-01-17	Neurobiol Aging	Genome-wide association study combining pathway analysis for typical sporadic amyotrophic lateral sclerosis in Chinese Han populations.	Amyotrophic lateral sclerosis (sporadic)	250 Han Chinese ancestry cases, 250 Han Chinese ancestry controls	NA	7q34	TBXAS1	rs8192851-?		2E-6				Illumina [859311]	N
1650	chr7	139695143	139695144	rs7795996	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	7q34	TBXAS1	rs7795996-A	0.657	4E-6		0.027	[0.015-0.039] unit increase	Affymetrix [7947838] (imputed)	N
1650	chr7	139702592	139702593	rs17837497	23007406	Yang JJ	2012-09-24	Blood	Genome-wide association study identifies germline polymorphisms associated with relapse of childhood acute lymphoblastic leukemia.	Acute lymphoblastic leukemia (childhood)	1,268 European, South Asian, East Asian, African American/Afro-Caribbean, Hispanic and other ancestry cases	1,267 European, South Asian, East Asian, African American/Afro-Caribbean, Hispanic and other ancestry cases	7q34	TBXAS1	rs17837497-A	0.016	2E-6		2.34	[1.65-3.31]	Affymetrix [444044]	N
1650	chr7	139712417	139712418	rs2158731	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	7q34		rs2158731-C	NR	7E-9		0.0124	[0.0083-0.0165] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1650	chr7	139715341	139715342	rs2286200	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	7q34	TBXAS1	rs2286200-?	NR	1E-8		0.0299175	[0.02-0.04] unit decrease	Illumina [4804024] (imputed)	N
1650	chr7	139718146	139718147	rs2240395	28043905	Nicoletti P	2016-12-30	Gastroenterology	Association of Liver Injury From Specific Drugs, or Groups of Drugs, With Polymorphisms in HLA and Other Genes in a Genome-Wide Association Study.	Drug-induced liver injury (nonsteroidal anti-inflammatory drugs)	144 European ancestry cases, 10,588 European ancestry controls	NA	7q34		rs2240395-?		3E-7		1.84	1.45-2.31	Illumina [505740] (imputed)	N
1650	chr7	139719438	139719439	rs6952262	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	7q34	TBXAS1	rs6952262-G	0.201178	7E-9		0.01594258	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1650	chr7	139719438	139719439	rs6952262	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	7q34	NR	rs6952262-G	0.205159	2E-12		0.016152	[0.012-0.021] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1650	chr7	139719438	139719439	rs6952262	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	7q34	NR	rs6952262-G	0.20412	1E-11		0.015933	[0.011-0.021] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1650	chr7	139719438	139719439	rs6952262	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	7q34		rs6952262-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1650	chr7	139719438	139719439	rs6952262	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	7q34		rs6952262-?	NR	7E-9				NR [~ 8900000] (imputed)	N
1651	chr7	139723399	139723400	rs2269997	32469254	Matsunaga H	2020-05-29	Circ Genom Precis Med	Transethnic Meta-analysis of Genome-wide Association Studies Identifies Three New Loci and Characterizes Population-specific Differences for Coronary Artery Disease.	Coronary artery disease	15,302 Japanese ancestry cases, 76,014 European and East Asian ancestry cases, 36,140 Japanese ancestry controls, 264,785 European and East Asian ancestry controls	NA	7q34	PARP12	rs2269997-G	0.74	1E-8		1.05	[1.05-1.05]	Illumina [5167567] (imputed)	N
1651	chr7	139724357	139724358	rs2269996	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q34	NR	rs2269996-A	0.268424	1E-14				Affymetrix, Illumina [24649327] (imputed)	N
1651	chr7	139724357	139724358	rs2269996	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q34	NR	rs2269996-A	0.243911	7E-14				Affymetrix, Illumina [23467995] (imputed)	N
1651	chr7	139726206	139726207	rs2286198	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	7q34		rs2286198-A	NR	7E-19		0.0128	[0.01-0.016] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1651	chr7	139728045	139728046	rs6945612	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	7q34	PARP12	rs6945612-C	NR	3E-9		0.0210225	[0.014-0.028] unit increase	Affymetrix [321016] (imputed)	N
1651	chr7	139731708	139731709	rs1544460	33578652	Adjei AA	2021-02-10	Cancers (Basel)	Genetic Variations and Health-Related Quality of Life (HRQOL): A Genome-Wide Study Approach.	Mental health related quality of life	1,386 European ancestry individuals, 56 individuals	NA	7q34	PARP12	rs1544460-A	0.43	4E-7		3.41	[2.1-4.72] unit decrease	Illumina [7254516] (imputed)	N
1651	chr7	139735855	139735856	rs199610373	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	7q34	PARP12	rs199610373-A	0.8172	5E-27		0.0264	[0.021-0.031] unit decrease	Affymetrix [18391927] (imputed)	N
1651	chr7	139737343	139737344	rs9640375	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	7q34	PARP12, TBXAS1	rs9640375-C	0.779956	2E-10		1.06	[1.04-1.08]	NR [8126035] (imputed)	N
1651	chr7	139749345	139749346	rs7781964	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q34	NR	rs7781964-A	0.242499	6E-11				Affymetrix, Illumina [23472807] (imputed)	N
1651	chr7	139749345	139749346	rs7781964	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7q34		rs7781964-?	NR	3E-24				NR [~ 8900000] (imputed)	N
1651	chr7	139757135	139757136	rs10237377	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	7q34	PARP12	rs10237377-T	0.3608	7E-9		0.0338	[0.022-0.045] unit decrease	Affymetrix [at least 7947838] (imputed)	N
1651	chr7	139757135	139757136	rs10237377	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	7q34	PARP12	rs10237377-T	0.3637	9E-11		0.0423	[0.03-0.055] unit decrease	NR [8041861] (imputed)	N
1651	chr7	139758720	139758721	rs10155912	27723757	Jin Y	2016-11-01	Nat Genet	Genome-wide association studies of autoimmune vitiligo identify 23 new risk loci and highlight key pathways and regulatory variants.	Vitiligo	2,853 European ancestry cases and 37,405 European ancestry controls	1,827 European ancestry cases and 2,181 European ancestry controls	7q34	PARP12	rs10155912-?	NR	1E-7		1.14	NR	Illumina [8966411] (imputed)	N
1651	chr7	139803521	139803522	rs62491385	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	7q34	KDM7A	rs62491385-C	0.0975390000000001	8E-22		0.036619194	[0.029-0.044] unit decrease	Affymetrix [93095623] (imputed)	N
1651	chr7	139803521	139803522	rs62491385	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	7q34	KDM7A	rs62491385-C	0.097537	9E-14		0.028412282	[0.021-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
1651	chr7	139825212	139825213	rs75886993	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	7q34		rs75886993-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1651	chr7	139852794	139852795	rs112167139	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	7q34		rs112167139-T	0.08	8E-9		5.77	z score increase	Affymetrix [9061022] (imputed)	N
1652	chr7	139875229	139875230	rs536864738	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	7q34		rs536864738-T	NR	4E-11		0.2046	[0.14-0.27] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1652	chr7	139875229	139875230	rs536864738	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	7q34	KDM7A	rs536864738-T	0.00154699999999997	3E-9		0.17760606	[0.12-0.24] unit increase	Affymetrix [93095623] (imputed)	N
1652	chr7	139875229	139875230	rs536864738	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	7q34	KDM7A	rs536864738-T	0.00154799999999999	4E-11		0.19727154	[0.14-0.26] unit increase	Affymetrix [93095623] (imputed)	N
1652	chr7	139875229	139875230	rs536864738	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q34	NR	rs536864738-C	0.998469	2E-15				Affymetrix, Illumina [24588908] (imputed)	N
1652	chr7	139875229	139875230	rs536864738	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	7q34	NR	rs536864738-C	0.998454	9E-18		0.22583	[0.17-0.28] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1652	chr7	139881299	139881300	rs75511207	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	7q34	NR	rs75511207-C	0.0975519	4E-9		0.0304276	[0.02-0.041] unit increase	NR [19129689] (imputed)	N
1652	chr7	139885276	139885277	rs62491456	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	7q34	NR	rs62491456-?	NR	4E-9				Affymetrix [~ 8270000] (imputed)	N
1652	chr7	139885276	139885277	rs62491456	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	7q34		rs62491456-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1652	chr7	139885276	139885277	rs62491456	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	7q34	NA	rs62491456-T	0.0953	1E-9		0.0197	[0.013-0.026] unit increase	NR [~ 27400000] (imputed)	N
1652	chr7	139914960	139914961	rs7797205	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7q34		rs7797205-?	NR	5E-20				NR [~ 8900000] (imputed)	N
1652	chr7	139916398	139916399	rs573901234	33075057	Li X	2020-10-19	PLoS Genet	Automated feature extraction from population wearable device data identified novel loci associated with sleep and circadian rhythms.	Sleep duration (< 5 hours)	90,515 individuals	NA	7q34	JHDM1D-AS1	rs573901234-T	NR	1E-8		3.294	[2.88-3.71] unit increase	NR [11024754] (imputed)	N
1652	chr7	139920972	139920973	rs13223890	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	7q34	U6	rs13223890-?	NR	4E-8		0.033	[0.021-0.045] unit decrease	Illumina [34656550] (imputed)	N
1652	chr7	139937236	139937237	rs2471279	34020725	Reddy JS	2021-05-21	Acta Neuropathol Commun	Genome-wide analysis identifies a novel LINC-PINT splice variant associated with vascular amyloid pathology in Alzheimer's disease.	Cerebral amyloid angiopathy in Alzheimer's disease	821 European ancestry individuals	NA		JHDM1D-AS1	rs2471279-A	0.27	5E-6		0.1	[0.06-0.15] unit increase	Illumina [1679420] (imputed)	N
1652	chr7	139942303	139942304	rs11977670	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Breast cancer	17,389 European ancestry cases, 240,341 European ancestry controls, 6,325 East Asian ancestry cases, 73,225 East Asian ancestry controls	NA	7q34		rs11977670-A	NR	4E-8		0.055	[0.035-0.075] unit increase	Affymetrix, Illumina [25794640] (imputed)	N
1652	chr7	139942303	139942304	rs11977670	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	7q34		rs11977670-A	NR	1E-19		1.05	[1.04-1.07]	Affymetrix, Illumina [NR] (imputed)	N
1652	chr7	139942303	139942304	rs11977670	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	7q34	intergenic	rs11977670-A	0.43	1E-16	(EA)	1.06	[1.04-1.08] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
1652	chr7	139982755	139982756	rs2471299	33607655	Imamura M	2021-02-19	Hum Mol Genet	Genome-Wide Association Studies Identify Two Novel Loci Conferring Susceptibility to Diabetic Retinopathy in Japanese Patients with Type 2 Diabetes.	Diabetic retinopathy in type 2 diabetes	5,532 Japanese ancestry cases, 5,565 Japanese ancestry controls	3,010 Japanese ancestry cases, 1,562 Japanese ancestry controls	7q34	NR	rs2471299-A	0.53	4E-7		1.13	[1.08-1.18]	Illumina [5790508] (imputed)	N
1653	chr7	140001938	140001939	rs12538711	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	7q34	NR	rs12538711-G	0.49416	8E-13		0.0219394	[0.016-0.028] unit decrease	NR [19129689] (imputed)	N
1653	chr7	140005192	140005193	rs11769879	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	7q34		rs11769879-?	NR	7E-8				NR [~ 8900000] (imputed)	N
1653	chr7	140021115	140021115	rs542083084	30070759	Olsson M	2018-08-02	J Thromb Haemost	Genome-wide analysis of genetic determinants of circulating factor VII activating protease (FSAP) activity.	Plasma factor VII activating protease levels	3,126 Swedish ancestry individuals	NA	7q34	Intergenic	rs542083084-?		8E-6		32.7	[18.39-47.01] unit decrease	Illumina [~ 10000000] (imputed)	N
1653	chr7	140086948	140086949	rs56402448	29538362	Jilling T	2018-03-14	Pediatr Res	Surgical necrotizing enterocolitis in extremely premature neonates is associated with genetic variations in an intergenic region of chromosome eight.	Surgical necrotising enterocolitis in extremely premature birth	20 African American cases, 6 Hispanic Caucasian cases, 4 European ancestry cases,  283 African American controls, 130 Hispanic Caucasian controls, 133 European ancestry controls,	NA	7q34	NR	rs56402448-?	NR	6E-6				Illumina [8270200] (imputed)	N
1654	chr7	140124822	140124823	rs7793448	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	7q34		rs7793448-T	0.717	6E-11		0.008	[0.006-0.01] unit increase	NR [NR] (imputed)	N
1654	chr7	140124822	140124823	rs7793448	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	7q34	NR	rs7793448-A	NR	2E-9		0.0158	[0.011-0.021] unit increase	Affymetrix [9000000] (imputed)	N
1654	chr7	140135034	140135035	rs6464772	26718567	Williams SR	2015-12-30	Neurology	Shared genetic susceptibility of vascular-related biomarkers with ischemic and recurrent stroke.	Creatinine levels in ischemic stroke	1,725 European ancestry cases, 258 African ancestry cases, 117 cases	NA	7q34	NR	rs6464772-?	NR	4E-6				Illumina [7500450] (imputed)	N
1654	chr7	140143519	140143520	rs10952668	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	7q34	NR	rs10952668-?	NR	4E-6		4.621	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1654	chr7	140144413	140144414	rs113367286	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	7q34	MKRN1	rs113367286-C	0.720689	2E-13		0.0171666	[0.013-0.022] unit decrease	NR [16516521] (imputed)	N
1654	chr7	140155799	140155800	rs17621014	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (unassigned genus belonging to family Lachnospiraceae)	1,068 Japanese ancestry individuals	NA	7q34	MKRN1	rs17621014-T	0.08	8E-6		0.0922	[0.052-0.133] unit decrease	Illumina [6380737] (imputed)	N
1654	chr7	140158850	140158851	rs2272095	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	7q34		rs2272095-G	NR	2E-9		0.0114	[0.0077-0.0151] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
1654	chr7	140158850	140158851	rs2272095	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	7q34	MKRN1	rs2272095-C	0.7371	9E-11		0.01739636	[0.012-0.023] unit increase	Affymetrix [11515109] (imputed)	N
1654	chr7	140159388	140159389	rs80206917	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	7q34	MKRN1	rs80206917-C	0.293592	1E-13		0.018371481	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1654	chr7	140159388	140159389	rs80206917	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	7q34	NR	rs80206917-?	NR	9E-8	(male)	0.15248	[0.097-0.208] unit decrease	Affymetrix [7794483] (imputed)	N
1654	chr7	140159388	140159389	rs80206917	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	7q34	NR	rs80206917-?	NR	5E-7		0.11631	[0.071-0.162] unit decrease	Affymetrix [7794483] (imputed)	N
1654	chr7	140169705	140169706	rs55780162	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7q34		rs55780162-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1654	chr7	140175329	140175330	rs12537434	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	7q34	MKRN1	rs12537434-A	0.263	1E-8		0.0077	[0.0052-0.0102] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
1654	chr7	140182513	140182514	rs113247159	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first birth	542,901 European ancestry individuals	NA	7q34	MKRN1	rs113247159-T	0.6961	3E-8		0.0641	[0.042-0.087] unit decrease	NR [9744772] (imputed)	N
1654	chr7	140225749	140225750	rs2252397	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	7q34	NR	rs2252397-A	0.436891	5E-16		0.0250723	[0.019-0.031] unit increase	NR [19129689] (imputed)	N
1654	chr7	140231129	140231130	rs10237118	20395239	Macgregor S	2010-04-15	Hum Mol Genet	Genome-wide association identifies ATOH7 as a major gene determining human optic disc size.	Optic nerve measurement (cup area)	1,368 European ancestry twins from 666 families	848 European ancestry twins from 531 families	7q34	DENND2A	rs10237118-C	NR	4E-6		0.313	[0.15-0.47] unit increase	Illumina [~ 2740000] (imputed)	N
1654	chr7	140238047	140238048	rs12703989	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	7q34	DENND2A	rs12703989-A	0.4888	1E-9		0.1521	[0.1-0.2] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1654	chr7	140240354	140240355	rs4236489	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	7q34	DENND2A	rs4236489-A	0.504706	2E-18		0.019828195	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1654	chr7	140242660	140242661	rs7800558	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	7q34	DENND2A	rs7800558-C	0.417407	4E-10		0.014300824	[0.0098-0.0188] unit decrease	Affymetrix [93095623] (imputed)	N
1655	chr7	140270225	140270226	rs58590331	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7q34		rs58590331-?	NR	3E-19				NR [~ 8900000] (imputed)	N
1655	chr7	140323821	140323822	rs269232	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	7q34	DENND2A	rs269232-A	0.7042	1E-12		0.0147	[0.011-0.019] unit decrease	Affymetrix [18391927] (imputed)	N
1656	chr7	140477005	140477006	rs7806794	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	7q34		rs7806794-T	0.076336	9E-9		0.022357	[0.015-0.03] unit increase	Illumina [13479295] (imputed)	N
1656	chr7	140486244	140486244	rs35407685	26379185	Garcia-Etxebarria K	2015-09-17	PLoS One	No Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity.	Mild influenza (H1N1) infection	107 European ancestry mild cases, 549 European ancestry population controls	NA	7q34	BRAF	rs35407685-?	0.0	3E-8				Affymetrix [547296]	N
1656	chr7	140495572	140495573	rs1733826	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	6-month creatinine clearance change response to tenofovir treatment in HIV infection (treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	7q34	NR	rs1733826-?		4E-6	(EA)			Illumina [~ 5140000] (imputed)	N
1657	chr7	140522072	140522073	rs60251368	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	7q34	NR	rs60251368-G	0.0681	2E-12		0.0549	[0.04-0.07] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1657	chr7	140544164	140544165	rs1267601	33657282	Liu X	2021-03-03	Aging Cell	Integrated genetic analyses revealed novel human longevity loci and reduced risks of multiple diseases in a cohort study of 15,651 Chinese individuals.	Longevity	11,045 Chinese ancestry individuals	NA	7q34	BRAF	rs1267601-C	NR	1E-6		0.2034	[0.12-0.28] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1657	chr7	140553025	140553025	rs569319774	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	7q34		rs569319774-GA	0.064552806	6E-9		1.1131161	[1.073681356-1.153999397]	Illumina [8919992] (imputed)	N
1657	chr7	140579350	140579351	rs71170768	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	7q34	BRAF	rs71170768-TA	0.316	2E-10		1.07	[1.05-1.09]	Affymetrix, Illumina [11800000] (imputed)	N
1657	chr7	140592226	140592227	rs17623382	22437554	Major JM	2012-03-21	J Nutr	Genome-wide association study identifies three common variants associated with serologic response to vitamin E supplementation in men.	Response to Vitamin E supplementation	2,112 European ancestry individuals	NA	7q34	BRAF	rs17623382-G	0.16	4E-6	(change in alpha-TOH)	0.78	[0.45-1.11] unit increase	Illumina [549989]	N
1657	chr7	140612162	140612163	rs9648716	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	7q34	BRAF	rs9648716-T	0.1531	4E-7	(EA)	0.0759	[0.047-0.105] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1657	chr7	140612162	140612163	rs9648716	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	7q34	BRAF	rs9648716-T	0.15	1E-9		1.06	[1.04-1.09]	Affymetrix, Illumina [NR] (imputed)	N
1657	chr7	140614211	140614212	rs11762469	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	7q34		rs11762469-?	NR	6E-16				NR [~ 8900000] (imputed)	N
1657	chr7	140633480	140633481	rs79811809	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cerebrospinal fluid t-tau:AB1-42 ratio	up to 189 European and other ancestry early mild cognitive impairment cases,  up to 251 European and other ancestry late mild cognitive impairment cases,  up to 121 European and other ancestry Alzheimer's disease cases,  up to 215 European and other ancestry health	up to 3 European and other ancestry significant memory concern cases,  up to 57 European and other ancestry early mild cognitive impairment cases,   up to 61 European and other ancestry late mild cognitive impairment cases,  up to 62 European and other ancestry Alzheimer's disease cases,  up to 21 European and other ancestry healthy controls	7q34	BRAF, MRPS33	rs79811809-A	0.04	7E-6		0.2638	[NR] unit increase	Illumina [~ 9000000] (imputed)	N
1657	chr7	140633480	140633481	rs79811809	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cerebrospinal T-tau levels	up to 189 European and other ancestry early mild cognitive impairment cases,  up to 251 European and other ancestry late mild cognitive impairment cases,  up to 121 European and other ancestry Alzheimer's disease cases,  up to 215 European and other ancestry healthy controls	up to 3 European and other ancestry significant memory concern cases,  up to 57 European and other ancestry early mild cognitive impairment cases,   up to 61 European and other ancestry late mild cognitive impairment cases,  up to 62 European and other ancestry Alzheimer's disease cases,  up to 21 European and other ancestry healthy controls	7q34	BRAF, MRPS33	rs79811809-A	0.04	3E-7		0.2394	[NR] unit increase	Illumina [~ 9000000] (imputed)	N
1658	chr7	140654765	140654766	rs73497971	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference	1,254 whole genome sequenced European ancestry individuals, 3,074 whole genome sequenced individuals, 29,716 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 701 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,050 Mylopotamos (founder/genetic isolate) individuals, 883 Pomak (founder/genetic isolate) individuals	205,909 European ancestry individuals	7q34	RP4-813F11.3	rs73497971-T	0.0021	6E-6		1.1268	[0.64-1.61] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1658	chr7	140665520	140665521	rs10265001	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	7q34	MRPS33, BRAF	rs10265001-?		5E-9				NR [6786993] (imputed)	N
1658	chr7	140666964	140666965	rs13236223	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Bipolar disorder (MTAG)	at least 20,352 European ancestry cases, at least 31,358 European ancestry controls	NA	7q34	NR	rs13236223-T	0.7823	1E-8		0.07514365	[0.049-0.101] unit increase	NR [NR]	N
1658	chr7	140666964	140666965	rs13236223	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	67,764 individuals	NA	7q34	NR	rs13236223-?		2E-8				NR [8377093]	N
1658	chr7	140666964	140666965	rs13236223	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Bipolar disorder (MTAG)	65,682 individuals	NA	7q34	NR	rs13236223-?		2E-9				NR [520857]	N
1658	chr7	140676152	140676153	rs10255167	34002096	Mullins N	2021-05-17	Nat Genet	Genome-wide association study of more than 40,000 bipolar disorder cases provides new insights into the underlying biology.	Bipolar disorder	41,917 European ancestry cases, 371,549 European ancestry controls	NA	7q34	MRPS33	rs10255167-G	0.222	2E-8		0.93576	[0.91-0.96]	Affymetrix, Illumina [7549318] (imputed)	N
1658	chr7	140683397	140683398	rs9886260	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	7q34	CCT4P1	rs9886260-G	NR	3E-8		0.0176286	[0.011-0.024] unit increase	Affymetrix [321114] (imputed)	N
1658	chr7	140706156	140706157	rs6662	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	7q34	MRPS33	rs6662-G	NR	4E-9		0.0213079	[0.014-0.028] unit increase	Affymetrix [321114] (imputed)	N
1658	chr7	140729935	140729936	rs13234490	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	7q34		rs13234490-?	NR	7E-9				NR [~ 8900000] (imputed)	N
1658	chr7	140768158	140768159	rs35755081	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar I disorder	14,879 European ancestry cases, 31,358 European ancestry controls	NA	7q34	NR	rs35755081-A	0.481	4E-7		1.08643		NR [9372253] (imputed)	N
1659	chr7	140778637	140778637	rs140938174	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		TMEM178B	rs140938174-?	NR	7E-9	(female)	0.482316	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1659	chr7	140826687	140826693	rs773619768	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (hospitalized covid vs population)	613 European ancestry cases, 680,416 European ancestry controls, 140 Hispanic or Latin American cases, 94,327 Hispanic or Latin American controls, 49 Black or African American cases, 22,410 Black or African American controls	NA	7q34		rs773619768-?	NR	6E-6		0.7698139	[0.44-1.1] unit decrease	Illumina [9875426] (imputed)	N
1659	chr7	140888320	140888321	rs16882396	24556642	Zeng Z	2014-02-18	Caries Res	Genome-wide association study of primary dentition pit-and-fissure and smooth surface caries.	Smooth-surface caries	1006 European ancestry individuals	NA	7q34	LOC100507421	rs16882396-C	0.015	2E-6		1.1568	[NR] unit decrease	Illumina [1216189] (imputed)	N
1660	chr7	140970818	140970819	rs76405237	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	7q34	NR	rs76405237-G	NR	4E-6		1.1494253	[NR]	Illumina [7158791] (imputed)	N
1661	chr7	141101901	141101902	rs11983421	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota alpha diversity (Chao1 index)	1,068 Japanese ancestry individuals	NA	7q34	TMEM178B	rs11983421-G	0.02	8E-6	(male)	153.0	[86.36-219.64] unit decrease	Illumina [6380737] (imputed)	N
1662	chr7	141198833	141198834	rs183366607	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	7q34	NR	rs183366607-?	NR	2E-6		0.901011	[0.53-1.27] unit increase	NR [13958389] (imputed)	N
1662	chr7	141272715	141272716	rs4632970	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	7q34	NR	rs4632970-?	NR	5E-6		4.57	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1663	chr7	141300610	141300611	rs7789850	25897833	Thompson AG	2015-04-21	Transl Psychiatry	Genome-wide association study of behavioural and psychiatric features in human prion disease.	Mood disorder and prion disease	Up to 170 cases, 5,200 controls	NA	7q34	AGK	rs7789850-?	0.026	2E-6		4.6	[2.70-7.83]	Illumina [518938]	N
1663	chr7	141313970	141313971	rs144706178	31376382	Yang C	2019-07-31	J Invest Dermatol	Exome-Wide Rare Loss-of-Function Variant Enrichment Study of 21,347 Han Chinese Individuals Identifies Four Susceptibility Genes for Psoriasis.	Psoriasis	10,668 Chinese ancestry cases, 10,679 Chinese ancestry controls	NA	7q34	AGK	rs144706178-?		2E-15		0.1109		NR [66000]	N
1663	chr7	141328144	141328145	rs78851245	33904754	Cartwright R	2021-04-27	J Urol	Genome Wide Association Study Identifies Two Novel Loci Associated with Female Stress and Urgency Urinary Incontinence.	Urinary incontinence	2,942 European ancestry cases, 6,037 European ancestry controls	2,065 European ancestry cases, 2,004 European ancestry controls	7q34		rs78851245-T	NR	2E-7		3.22	[2.13-4.86]	Illumina [9700000] (imputed)	N
1663	chr7	141383298	141383299	rs139981949	33838163	Luo S	2021-04-07	Kidney Int	Genome-wide association study of serum metabolites in the African American Study of Kidney Disease and Hypertension.	Serum metabolite concentrations in chronic kidney disease	619 African American individuals	NA	7q34	KIAA1147	rs139981949-?	NR	9E-12	(glycohyocholate)	1.21	[NR] unit increase	Illumina [14760605] (imputed)	N
1663	chr7	141398706	141398707	rs10261515	30223776	Hwang LD	2018-09-17	BMC Genomics	Bivariate genome-wide association analysis strengthens the role of bitter receptor clusters on chromosomes 7 and 12 in human bitter taste.	Bitter taste perception (multivariate analysis)	1,999 European ancestry individuals from 929 twin families	NA	7q34	NR	rs10261515-?		4E-6	(denatonium benzoate and caffeine)			Illumina [4381914] (imputed)	N
1663	chr7	141398706	141398707	rs10261515	30223776	Hwang LD	2018-09-17	BMC Genomics	Bivariate genome-wide association analysis strengthens the role of bitter receptor clusters on chromosomes 7 and 12 in human bitter taste.	Bitter taste perception (multivariate analysis)	1,999 European ancestry individuals from 929 twin families	NA	7q34	NR	rs10261515-?		3E-8	(denatonium benzoate and quinine)			Illumina [4381914] (imputed)	N
1663	chr7	141398941	141398942	rs13231650	31005965	Coltell O	2019-04-21	Am J Clin Nutr	Association between taste perception and adiposity in overweight or obese older subjects with metabolic syndrome and identification of novel taste-related genes.	Bitter taste perception (phenylthiocarbamide) in obesity with metabolic syndrome	372 individuals	NA	7q34	KIAA1147	rs13231650-T	0.358	2E-6		0.487	[0.29-0.68] unit increase	Illumina [622468]	N
1663	chr7	141407715	141407716	rs6963959	31005965	Coltell O	2019-04-21	Am J Clin Nutr	Association between taste perception and adiposity in overweight or obese older subjects with metabolic syndrome and identification of novel taste-related genes.	Bitter taste perception (phenylthiocarbamide) in obesity with metabolic syndrome	372 individuals	NA	7q34	WEE2	rs6963959-A	0.335	5E-7		0.516	[0.32-0.71] unit increase	Illumina [622468]	N
1663	chr7	141407715	141407716	rs6963959	31005965	Coltell O	2019-04-21	Am J Clin Nutr	Association between taste perception and adiposity in overweight or obese older subjects with metabolic syndrome and identification of novel taste-related genes.	Bitter taste perception (6-n-propylthiouracil) in obesity with metabolic syndrome	368 individuals	NA	7q34	WEE2	rs6963959-A	0.335	4E-7		0.509	[0.32-0.7] unit increase	Illumina [622468]	N
1664	chr7	141469909	141469910	rs76939696	29596498	Charles BA	2018-03-29	PLoS One	Analyses of genome wide association data, cytokines, and gene expression in African-Americans with benign ethnic neutropenia.	Low white blood cell count (conditioned on rs2814778)	592 African American individuals with low white blood cell count, 586 African American individuals with high white blood cell count	NA	7q34	intergenic	rs76939696-T	0.9471	1E-6		3.5701	[3.06-4.08]	Illumina [at least 656747] (imputed)	N
1664	chr7	141491065	141491066	rs2234017	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		7q34	TAS2R5	rs2234017-C	0.056	7E-6	(liability model)	0.17	[0.092-0.248] unit increase	NR [19725427] (imputed)	N
1664	chr7	141505086	141505087	rs145241704	33592630	Herrera-Rivero M	2021-02-16	Thromb Haemost	Single- and Multimarker Genome-Wide Scans Evidence Novel Genetic Risk Modifiers for Venous Thromboembolism.	Venous thromboembolism	964 European ancestry cases, 899 European ancestry controls	NA	7q34	MTND1P3	rs145241704-G	NR	3E-9		16.58	[6.559-41.93]	Illumina [484621]	N
1664	chr7	141505086	141505087	rs145241704	23568457	Wade TD	2013-04-09	Int J Eat Disord	Genetic variants associated with disordered eating.	Anorexia nervosa	237 European ancestry female cases, 2,287 European ancestry female controls	NA	7q34	CLEC5A, LOC136242 KIAA1147, MGAM, OR9A4, SSBP1, TAS2R3, TAS2R4, TAS2R5, TAS2R38, WEE2	rs145241704-T	0.952	2E-7		0.143	[0.09-0.196] unit decrease	Illumina [6150213] (imputed)	N
1664	chr7	141537967	141537968	rs11765575	31005965	Coltell O	2019-04-21	Am J Clin Nutr	Association between taste perception and adiposity in overweight or obese older subjects with metabolic syndrome and identification of novel taste-related genes.	Bitter taste perception (6-n-propylthiouracil) in obesity with metabolic syndrome	368 individuals	NA	7q34	PRSS37	rs11765575-G	0.377	8E-7		0.512	[0.31-0.71] unit increase	Illumina [622468]	N
1664	chr7	141549316	141549317	rs7798566	31675503	Gurdasani D	2019-10-01	Cell	Uganda Genome Resource Enables Insights into Population History and Genomic Discovery in Africa.	Body mass index	14,126 African ancestry individuals	NA	7q34		rs7798566-A	0.978	3E-15		0.422917	unit increase	Affymetrix, Illumina [at least 24423923] (imputed)	N
1664	chr7	141550779	141550780	rs13236432	31085060	Gisbert L	2019-05-10	Eur Neuropsychopharmacol	Genome-wide analysis of emotional lability in adult attention deficit hyperactivity disorder (ADHD).	Emotional lability in attention deficit hyperactivity disorder	563 European ancestry individuals	NA	7q34	PRSS37	rs13236432-C	NR	8E-6		1.77	[1.38-2.27]	Illumina [2777520] (imputed)	N
1665	chr7	141581324	141581325	rs1285961	31005965	Coltell O	2019-04-21	Am J Clin Nutr	Association between taste perception and adiposity in overweight or obese older subjects with metabolic syndrome and identification of novel taste-related genes.	Bitter taste perception (phenylthiocarbamide) in obesity with metabolic syndrome	372 individuals	NA	7q34	intergenic	rs1285961-T	0.464	4E-6		0.451	[0.26-0.64] unit increase	Illumina [622468]	N
1665	chr7	141636562	141636563	rs1285950	32063569	Alemany-Navarro M	2020-01-29	J Affect Disord	Exploring genetic variants in obsessive compulsive disorder severity: A GWAS approach.	Compulsion score in obsessive compulsive disorder	376 Spanish ancestry individuals	NA	7q34	CLEC5A	rs1285950-?	NR	4E-6		1.4286808	NR unit decrease	Illumina [338357]	N
1665	chr7	141658199	141658200	rs111979811	34311721	Alotaibi RN	2021-07-26	BMC Oral Health	Genome-Wide Association Study (GWAS) of dental caries in diverse populations.	Permanent dental caries (decayed and filled teeth)	2,570 adults	NA	7q34		rs111979811-?	NR	1E-6		2.07	unit decrease	Illumina [8859951] (imputed)	N
1665	chr7	141668402	141668403	rs4726481	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter alcoholic beverage consumption	336,448 European ancestry individuals	39,924 European ancestry individuals	7q34	TAS2R38	rs4726481-G	0.601	2E-10		0.0067	[0.0047-0.0087] unit increase	Affymetrix [~ 7740000] (imputed)	N
1665	chr7	141672603	141672604	rs10246939	30223776	Hwang LD	2018-09-17	BMC Genomics	Bivariate genome-wide association analysis strengthens the role of bitter receptor clusters on chromosomes 7 and 12 in human bitter taste.	Bitter taste perception	1,999 European ancestry individuals from 929 twin families	NA	7q34	NR	rs10246939-?		3E-199	(PROP solution)	0.968	[0.91-1.02] unit increase	Illumina [4381914] (imputed)	N
1665	chr7	141672603	141672604	rs10246939	23966204	Ledda M	2013-08-20	Hum Mol Genet	GWAS of human bitter taste perception identifies new loci and reveals additional complexity of bitter taste genetics.	Bitter taste perception	503 Brazilian ancestry individuals	104 Brazilian ancestry individuals	7q34	Tas2R38	rs10246939-?	NR	2E-62	(PROP)	0.39	[0.34-0.44] unit decrease	Illumina [~ 1000000]	N
1665	chr7	141672704	141672705	rs1726866	31005965	Coltell O	2019-04-21	Am J Clin Nutr	Association between taste perception and adiposity in overweight or obese older subjects with metabolic syndrome and identification of novel taste-related genes.	Bitter taste perception (phenylthiocarbamide) in obesity with metabolic syndrome	372 individuals	NA	7q34	TAS2R38	rs1726866-A	0.426	1E-17		0.779	[0.61-0.95] unit increase	Illumina [622468]	N
1665	chr7	141672704	141672705	rs1726866	31005965	Coltell O	2019-04-21	Am J Clin Nutr	Association between taste perception and adiposity in overweight or obese older subjects with metabolic syndrome and identification of novel taste-related genes.	Bitter taste perception (6-n-propylthiouracil) in obesity with metabolic syndrome	368 individuals	NA	7q34	TAS2R38	rs1726866-A	0.426	4E-19		0.791	[0.63-0.96] unit increase	Illumina [622468]	N
1665	chr7	141672704	141672705	rs1726866	30223776	Hwang LD	2018-09-17	BMC Genomics	Bivariate genome-wide association analysis strengthens the role of bitter receptor clusters on chromosomes 7 and 12 in human bitter taste.	Bitter taste perception	1,999 European ancestry individuals from 929 twin families	NA	7q34	NR	rs1726866-?		3E-59	(PROP paper)	0.534	[0.47-0.6] unit increase	Illumina [4381914] (imputed)	N
1665	chr7	141673344	141673345	rs713598	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Tea consumption	336,898 European ancestry individuals	39,924 European ancestry individuals	7q34	TAS2R38	rs713598-G	0.401	3E-10		0.0098	[0.0067-0.0129] unit increase	Affymetrix [~ 7740000] (imputed)	N
1665	chr7	141673344	141673345	rs713598	20675712	Reed DR	2010-07-31	Hum Mol Genet	The perception of quinine taste intensity is associated with common genetic variants in a bitter receptor cluster on chromosome 12.	Bitter taste response	1,457 European ancestry individuals	73 European ancestry individuals	7q34	TAS2R38	rs713598-?	0.40	2E-104	(PROP)			Illumina [~ 2300000] (imputed)	N
1666	chr7	141759845	141759846	rs4341082	29495422	Xu H	2018-02-26	J Pers Med	A Genome-Wide Association Study of Idiopathic Dilated Cardiomyopathy in African Americans.	Idiopathic dilated cardiomyopathy	662 African American cases, 1,138 African American controls	NA	7q34	MGAM	rs4341082-C	0.469	5E-7		1.62	[1.88-2.62]	Affymetrix [up to 27494467] (imputed)	N
1666	chr7	141797563	141797564	rs11976181	28588231	Li M	2017-06-06	Sci Rep	Genome-wide association study of 1,5-anhydroglucitol identifies novel genetic loci linked to glucose metabolism.	1,5-anhydroglucitol levels	7,550 European ancestry individuals	8,790 European ancestry individuals, 2,030 African American individuals	7q34	MGAM	rs11976181-T	0.17	2E-23	(EA)	9.96	z-score increase	Affymetrix [at least 8500000] (imputed)	N
1666	chr7	141801006	141801007	rs3800993	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	7q34	MGAM	rs3800993-T	0.17	2E-15	(1,5-anhydroglucitol (1,5-AG))	0.029	[0.021-0.037] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
1667	chr7	141844509	141844510	rs13229622	28588231	Li M	2017-06-06	Sci Rep	Genome-wide association study of 1,5-anhydroglucitol identifies novel genetic loci linked to glucose metabolism.	1,5-anhydroglucitol levels	7,550 European ancestry individuals	8,790 European ancestry individuals, 2,030 African American individuals	7q34	MGAM2	rs13229622-C	0.22	4E-12	(EA)	6.95	z-score decrease	Affymetrix [at least 8500000] (imputed)	N
1667	chr7	141850771	141850772	rs13223215	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	7q34	LOC93432, PRSS58	rs13223215-T	NR	2E-6		0.156273	[0.091-0.221] unit decrease	Illumina [at least 950000] (imputed)	N
1667	chr7	141868071	141868072	rs71727326	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip	15 Asian ancestry cases, 13 European ancestry cases, 15 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	7q34	NR	rs71727326-?	NR	3E-6		4.3	[3.09-5.98]	Illumina [539000] (imputed)	N
1667	chr7	141892706	141892707	rs12703441	25390645	Otowa T	2014-11-12	PLoS One	Genome-wide and gene-based association studies of anxiety disorders in European and African American samples.	Anxiety disorder	324 African American cases, 273 African American controls, 757 European ancestry cases, 940 European ancestry controls	NA	7q34	intergenic	rs12703441-C		7E-6	(EA, factor score analysis)	0.062	[NR] unit decrease	Affymetrix [up to 730090]	N
1668	chr7	141972910	141972911	rs76755438	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Rubella	12,000 European ancestry cases, 71,597 European ancestry controls	NA	7q34	NR	rs76755438-?	NR	9E-6		0.3444	[0.2-0.49] unit increase	Illumina [at least 560000] (imputed)	N
1669	chr7	142103325	142103326	rs762688	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA		TRBV6-9, TRBV7-8, TRBV5-7, TRBV7-7, TRBV6-8, TRBV5-6, TRBV7-6, TRBV6-7, TRBV5-5	rs762688-?		4E-6		1.285017	[1.16-1.40]	Illumina [9389922] (imputed)	N
1669	chr7	142104570	142104571	rs361433	22864933	O'Donnell PH	2012-01-03	Cancer	Identification of novel germline polymorphisms governing capecitabine sensitivity.	Capecitabine sensitivity	Up to 84 East Asian ancestry lymphoblastoid cell lines, up to 164 European ancestry lymphoblastoid cell lines, up to 173 African ancestry lymphoblastoid cell lines, up to 82 African American lymphoblastoid cell lines	NA		intergenic	rs361433-?	NR	9E-7				NR [~ 2000000]	N
1669	chr7	142141745	142141746	rs11982969	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Ejection fraction in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	7q34	NR	rs11982969-?	NR	4E-6				Affymetrix [5486770] (imputed)	N
1669	chr7	142145796	142145797	rs28613963	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Myopia (age of diagnosis)	104,293 European ancestry individuals	NA	7q34	NR	rs28613963-T	0.909	2E-11		0.1783	[0.13-0.23] unit decrease	Illumina [~ 10600000] (imputed)	N
1670	chr7	142274853	142274854	rs2854536	24204295	Han F	2013-10-31	PLoS Genet	Genome wide analysis of narcolepsy in China implicates novel immune loci and reveals changes in association prior to versus after the 2009 H1N1 influenza pandemic.	Narcolepsy	1,189 Chinese ancestry cases, 1,997 Chinese ancestry controls	2,693 European ancestry cases, 11,495 European ancestry controls	7q34	TRB	rs2854536-?	0.292	4E-8		1.28	[1.18-1.41]	Affymetrix [603382]	N
1670	chr7	142327258	142327259	rs7383917	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	7q34	TRBV19, TRBV20-1, TRBV21-1, TRBV22-1, TRBV23-1, TRBV24-1	rs7383917-?		2E-7		1.3506213	[1.22-1.50]	Illumina [9389922] (imputed)	N
1670	chr7	142327842	142327843	rs13239736	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	7q34	TRBV19, TRBV20-1, TRBV21-1, TRBV22-1, TRBV23-1, TRBV24-1	rs13239736-?		8E-10		1.3315579	[1.22-1.40]	Illumina [9389922] (imputed)	N
1670	chr7	142334743	142334744	rs17211	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	7q34	TRBV20-1, TRBV19, TRBV21-1, TRBV22-1, TRBV23-1, TRBV24-1, TRBV25-1	rs17211-?		7E-7		1.4794	[1.28-1.71]	Illumina [9389922] (imputed)	N
1671	chr7	142355934	142355935	rs2226970	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	7q34	TRBV23-1, TRBV22-1, TRBV24-1, TRBV21-1, TRBV20-1, TRBV25-1, TRBV19, TRBVA, TRBV26	rs2226970-?		6E-10		1.320132	[1.22-1.40]	Illumina [9389922] (imputed)	N
1671	chr7	142360440	142360441	rs62470035	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	7q34	TRBV24-1, TRBV22-1, TRBV21-1, TRBV25-1, TRBV20-1, TRBVA, TRBV19, TRBV26	rs62470035-?		6E-7		1.5474	[1.32-1.82]	Illumina [9389922] (imputed)	N
1671	chr7	142371447	142371448	rs7777677	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	7q34	MTRNR2L6, TRBV24-1, TRBV25-1, TRBV23-1, TRBVA, TRBV22-1, TRBV21-1, TRBV26, TRBV20-1, TRBV19, TRBVB	rs7777677-?		6E-6		1.2297097	[1.14-1.30]	Illumina [9389922] (imputed)	N
1671	chr7	142391064	142391065	rs6954663	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	7q34	TRBVA, TRBV25-1, TRBV26, TRBV24-1, TRBVB, TRBV27, TRBV23-1, TRBV28, PGBD4P1, TRBV22-1, TRBV21-1	rs6954663-?		1E-9		1.3058239	[1.20-1.40]	Illumina [9389922] (imputed)	N
1671	chr7	142402725	142402726	rs17719655	33841421	Li J	2021-03-25	Front Immunol	Variants at the MHC Region Associate With Susceptibility to <i>Clostridioides difficile</i> Infection: A Genome-Wide Association Study Using Comprehensive Electronic Health Records.	Clostridioides difficle infection	1,160 European ancestry cases, 14,144 European ancestry controls	NA	7q34	TRBV26	rs17719655-A	0.0113	3E-6		2.02	[1.57-2.5]	Illumina [64973696] (imputed)	N
1671	chr7	142404176	142404177	rs2886944	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	7q34	TRBV26, TRBVA, TRBVB, TRBV27, TRBV28, TRBV25-1, PGBD4P1, TRBV24-1, TRBV29-1	rs2886944-?		8E-8		1.7788	[1.46-2.17]	Illumina [9389922] (imputed)	N
1671	chr7	142423288	142423289	rs17251	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA		TRBV27, TRBVB, TRBV28, PGBD4P1, TRBV26, TRBV29-1, TRBVA, PRSS1, TRBV25-1, PRSS3P1	rs17251-?		5E-11		1.3213531	[1.22-1.40]	Illumina [9389922] (imputed)	N
1671	chr7	142431348	142431349	rs6953502	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	7q34	PGBD4P1, TRBV28, TRBV27, TRBVB, TRBV29-1, PRSS1, TRBV26, PRSS3P1, TRBVA, PRSS3P2	rs6953502-?		2E-25		1.5984654	[1.47-1.70]	Illumina [9389922] (imputed)	N
1671	chr7	142433573	142433574	rs10243591	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	7q34	PGBD4P1, TRBV28, TRBV27, TRBVB, TRBV29-1, PRSS1, TRBV26, PRSS3P1, TRBVA, PRSS3P2	rs10243591-?		1E-16		1.4662757	[1.35-1.60]	Illumina [9389922] (imputed)	N
1671	chr7	142434445	142434446	rs6951271	29460428	Gelernter J	2018-02-20	Alcohol Clin Exp Res	Genomewide association study of alcohol dependence and related traits in a Thai population.	Alcohol consumption (max-drinks)	1,045 Thai ancestry individuals	NA	7q34	intergenic	rs6951271-A	0.645	6E-6		0.2306	[0.13-0.33] unit decrease	Illumina [at least 4683137] (imputed)	N
1671	chr7	142442286	142442287	rs60096066	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	7q34	TRBV29-1, PGBD4P1, TRBV28, PRSS1, TRBV27, TRBVB, PRSS3P1, PRSS3P2, TRBV26, WBP1LP1	rs60096066-?		7E-7		1.2640626	[1.16-1.40]	Illumina [9389922] (imputed)	N
1671	chr7	142450555	142450556	rs60095957	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	7q34	TRBV29-1, PRSS1, PRSS3P1, PGBD4P1, TRBV28, TRBV27, PRSS3P2, TRBVB, WBP1LP1, TRBJ2-1, TRBJ2-2, TRBJ2-2P, TRBJ2-3, TRBJ2-4, TRBJ2-5, TRBJ2-6, TRBJ2-7, TRBV26, TRBC2	rs60095957-?		8E-20		1.5377518	[1.41-1.70]	Illumina [9389922] (imputed)	N
1671	chr7	142453212	142453213	rs62470644	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	7q34	PRSS1, TRBV29-1, PRSS3P1, PGBD4P1, TRBV28, PRSS3P2, TRBV27, WBP1LP1, TRBVB, TRBJ2-1, TRBJ2-2, TRBJ2-2P, TRBJ2-3, TRBJ2-4, TRBJ2-5, TRBJ2-6, TRBJ2-7, TRBC2, TRBV26	rs62470644-?		2E-7		1.330141	[1.20-1.50]	Illumina [9389922] (imputed)	N
1671	chr7	142454867	142454868	rs4726575	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	7q34	PRSS1, TRBV29-1, PRSS3P1, PRSS3P2, PGBD4P1, TRBV28, TRBV27, WBP1LP1, TRBVB, TRBJ2-1, TRBJ2-2, TRBJ2-2P, TRBJ2-3, TRBJ2-4, TRBJ2-5, TRBJ2-6, TRBJ2-7, TRBC2	rs4726575-?		9E-32		1.7692852	[1.61-1.90]	Illumina [9389922] (imputed)	N
1671	chr7	142455526	142455527	rs3757378	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Scarlet fever	6,812 European ancestry cases, 113,837 European ancestry controls	NA	7q34	NR	rs3757378-?	NR	1E-7		0.1069	[0.068-0.146] unit decrease	Illumina [at least 560000] (imputed)	N
1671	chr7	142455537	142455538	rs3757377	30807572	Gong J	2019-02-26	PLoS Genet	Genetic association and transcriptome integration identify contributing genes and tissues at cystic fibrosis modifier loci.	Meconium ileus in cystic fibrosis	1,115 European ancestry cases, 5,655 European ancestry controls	NA	7q34	PRSS1	rs3757377-T	0.39	3E-7		1.29	NR	Illumina [8763019] (imputed)	N
1671	chr7	142456927	142456928	rs10273639	23143602	Whitcomb DC	2012-11-11	Nat Genet	Common genetic variants in the CLDN2 and PRSS1-PRSS2 loci alter risk for alcohol-related and sporadic pancreatitis.	Pancreatitis	676 European ancestry cases, 4,507 European ancestry controls	910 European ancestry cases, 4,170 European ancestry controls		PRSS2, PRSS1	rs10273639-C	0.576	2E-14		1.36	[1.30-1.42]	Illumina [625739]	N
1671	chr7	142459289	142459290	rs3857776	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	7q34	PRSS1, PRSS3P1, TRBV29-1, PRSS3P2, WBP1LP1, PGBD4P1, TRBV28, TRBJ2-1, TRBJ2-2, TRBJ2-2P, TRBJ2-3, TRBJ2-4, TRBJ2-5, TRBV27, TRBJ2-6, TRBJ2-7, TRBC2, TRBVB	rs3857776-?		2E-22		1.6931933	[1.54-1.90]	Illumina [9389922] (imputed)	N
1671	chr7	142463306	142463307	rs10258394	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PRSS2	5,364 Icelandic ancestry individuals	NA	7q34		rs10258394-C	0.4143	5E-14		0.146259	[0.11-0.18] unit decrease	Illumina [7506463] (imputed)	N
1671	chr7	142466453	142466454	rs35031873	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	7q34	PRSS3P1, PRSS1, PRSS3P2, TRBV29-1, WBP1LP1, TRBJ2-1, TRBJ2-2, TRBJ2-2P, TRBJ2-4, TRBJ2-5, TRBJ2-6, TRBJ2-7, TRBC2, PGBD4P1, TRBV28, TRBV27, TRBV30, TRBVB, TRBJ2-3	rs35031873-?		6E-22		1.6666666	[1.52-1.90]	Illumina [9389922] (imputed)	N
1671	chr7	142466770	142466771	rs55833042	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	7q34	PRSS3P1, PRSS1, PRSS3P2, TRBV29-1, WBP1LP1, TRBJ2-1, TRBJ2-2, TRBJ2-2P, TRBJ2-3, TRBJ2-4, TRBJ2-5, TRBJ2-6, TRBJ2-7, TRBC2, PGBD4P1, TRBV28, TRBV27, TRBV30, TRBVB	rs55833042-?		3E-29		1.7630465	[1.61-1.90]	Illumina [9389922] (imputed)	N
1671	chr7	142467217	142467218	rs28526168	28115739	Smith AH	2017-01-24	Mol Psychiatry	Genome-wide association study of therapeutic opioid dosing identifies a novel locus upstream of OPRM1.	Methadone dose in opioid dependence	1,027 European American cases, 383 African American cases	NA	7q34	PRSS1	rs28526168-A	0.05161462140992179	4E-6	(AA)	0.8405	[0.48-1.2] unit decrease	Illumina [at least 988306] (imputed)	N
1671	chr7	142470065	142470066	rs4726580	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	7q34	PRSS3P1, PRSS3P2, PRSS1, WBP1LP1, TRBV29-1, TRBJ2-1, TRBJ2-2, TRBJ2-2P, TRBJ2-3, TRBJ2-4, TRBJ2-5, TRBJ2-6, TRBJ2-7, TRBC2, PGBD4P1, TRBV30, TRBV28, TRBV27	rs4726580-?		1E-22		1.671123	[1.52-1.90]	Illumina [9389922] (imputed)	N
1671	chr7	142473463	142473464	rs13229701	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	7q34	PRSS2	rs13229701-T	0.574	3E-20	(Trypsin-2, PRSS2.5034.79.1)	0.23	[0.19-0.27] unit increase	Affymetrix [10572788] (imputed)	N
1671	chr7	142473512	142473513	rs35627987	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	7q34	PRSS3P1, PRSS3P2, PRSS1, WBP1LP1, TRBJ2-1, TRBJ2-2, TRBJ2-2P, TRBJ2-3, TRBJ2-4, TRBJ2-5, TRBJ2-6, TRBJ2-7, TRBV29-1, TRBC2, TRBV30, PGBD4P1, TRBV28, TRBV27	rs35627987-?		1E-6		1.5802782	[1.33-1.90]	Illumina [9389922] (imputed)	N
1672	chr7	142476440	142476441	rs4725602	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA		PRSS3P2, PRSS3P1, WBP1LP1, PRSS1, TRBJ2-1, TRBJ2-2, TRBJ2-2P, TRBJ2-3, TRBJ2-4, TRBJ2-5, TRBJ2-6, TRBJ2-7, TRBC2, TRBV29-1, TRBV30, PGBD4P1, TRBV28	rs4725602-?		3E-16		1.59821	[1.43-1.80]	Illumina [9389922] (imputed)	N
1672	chr7	142476451	142476452	rs138700403	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	7q34	PRSS3P2, PRSS3P1, WBP1LP1, PRSS1, TRBJ2-1, TRBJ2-2, TRBJ2-2P, TRBJ2-3, TRBJ2-4, TRBJ2-5, TRBJ2-6, TRBJ2-7, TRBC2, TRBV29-1, TRBV30, PGBD4P1, TRBV28	rs138700403-?		2E-21		1.7968	[1.60-2.01]	Illumina [9389922] (imputed)	N
1672	chr7	142477776	142477777	rs147767607	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	7q34	PRSS3P2, RSS3P1, WBP1LP1, TRBJ2-1, TRBJ2-2, TRBJ2-2P, TRBJ2-3, PRSS1, TRBJ2-4, TRBJ2-5, TRBJ2-6, TRBJ2-7, TRBC2, TRBV29-1, TRBV30, PGBD4P1, TRBV28	rs147767607-?		1E-17		1.7258	[1.53-1.94]	Illumina [9389922] (imputed)	N
1672	chr7	142477814	142477815	rs73742434	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	7q34	PRSS3P2, PRSS3P1, WBP1LP1, TRBJ2-1, TRBJ2-2, TRBJ2-2P, TRBJ2-3, TRBJ2-4, PRSS1, TRBJ2-5, TRBJ2-6, TRBJ2-7, TRBC2, TRBV29-1, TRBV30, PGBD4P1, TRBV28	rs73742434-?		8E-18		1.6747613	[1.49-1.90]	Illumina [9389922] (imputed)	N
1672	chr7	142477837	142477838	rs6464530	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	7q34	PRSS3P2, PRSS3P1, WBP1LP1, TRBJ2-1, TRBJ2-2, TRBJ2-2P, TRBJ2-3, TRBJ2-4, PRSS1, TRBJ2-5, TRBJ2-6, TRBJ2-7, TRBC2, TRBV29-1, TRBV30, PGBD4P1, TRBV28	rs6464530-?		6E-21		1.8773	[1.66-2.13]	Illumina [9389922] (imputed)	N
1672	chr7	142477980	142477981	rs4145394	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	7q34	TRBJ2-1, TRBV28, PRSS3P2, PRSS3P1, WBP1LP1, TRBJ2-2P, TRBJ2-3, TRBJ2-4, TRBJ2-5, TRBJ2-6, PRSS1, TRBJ2-7, TRBC2, TRBV29-1, TRBV30, PGBD4P1, TRBJ2-2	rs4145394-?		9E-21		1.8066847	[1.61-2.00]	Illumina [9389922] (imputed)	N
1672	chr7	142478578	142478579	rs73742436	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	7q34	PRSS3P2, PRSS3P1, WBP1LP1, TRBJ2-1, TRBJ2-2, TRBJ2-2P, TRBJ2-3, TRBJ2-4, TRBJ2-5, TRBJ2-6, TRBJ2-7, PRSS1, TRBC2, TRBV29-1, TRBV30, PGBD4P1, TRBV28	rs73742436-?		3E-14		1.5681355	[1.41-1.80]	Illumina [9389922] (imputed)	N
1672	chr7	142478598	142478599	rs148916504	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	7q34	PRSS3P2, PRSS3P1, WBP1LP1, TRBJ2-1, TRBJ2-2, TRBJ2-2P, TRBJ2-3, TRBJ2-4, TRBJ2-5, TRBJ2-6, TRBJ2-7, PRSS1, TRBC2, TRBV29-1, TRBV30, PGBD4P1, TRBV28	rs148916504-?		5E-15		1.6412	[1.46-1.84]	Illumina [9389922] (imputed)	N
1672	chr7	142479313	142479314	rs73742446	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	7q34	PRSS3P2, WBP1LP1, PRSS3P1, TRBJ2-1, TRBJ2-2, TRBJ2-2P, TRBJ2-3, TRBJ2-4, TRBJ2-5, TRBJ2-6, TRBJ2-7, PRSS1, TRBC2, TRBV29-1, TRBV30, PGBD4P1	rs73742446-?		4E-19		2.0149102	[1.75-2.30]	Illumina [9389922] (imputed)	N
1672	chr7	142479939	142479940	rs58649169	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	7q34	PRSS3P2, WBP1LP1, PRSS3P1, TRBJ2-1, TRBJ2-2, TRBJ2-2P, TRBJ2-3, TRBJ2-4, TRBJ2-5, TRBJ2-6, TRBJ2-7, PRSS1, TRBC2, TRBV29-1, TRBV30, PGBD4P1	rs58649169-?		3E-15		1.6204829	[1.45-1.80]	Illumina [9389922] (imputed)	N
1672	chr7	142480147	142480148	rs10808021	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	7q34	PRSS3P2, WBP1LP1, PRSS3P1, TRBJ2-1, TRBJ2-2, TRBJ2-2P, TRBJ2-3, TRBJ2-4, TRBJ2-5, TRBJ2-6, TRBJ2-7, PRSS1, TRBC2, TRBV29-1, TRBV30, PGBD4P1	rs10808021-?		5E-10		1.4427933	[1.30-1.60]	Illumina [9389922] (imputed)	N
1672	chr7	142481375	142481376	rs73740310	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	7q34	PRSS3P2, WBP1LP1, PRSS3P1, TRBJ2-1, TRBJ2-2, TRBJ2-2P, TRBJ2-3, TRBJ2-4, TRBJ2-5, TRBJ2-6, TRBJ2-7, PRSS1, TRBC2, TRBV29-1, TRBV30, PGBD4P1	rs73740310-?		3E-10		1.4649868	[1.32-1.60]	Illumina [9389922] (imputed)	N
1672	chr7	142481589	142481590	rs58854468	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	7q34	PRSS3P2, WBP1LP1, PRSS3P1, TRBJ2-1, TRBJ2-2, TRBJ2-2P, TRBJ2-3, TRBJ2-4, TRBJ2-5, TRBJ2-6, TRBJ2-7, PRSS1, TRBC2, TRBV29-1, TRBV30, PGBD4P1	rs58854468-?		4E-23		1.9076688	[1.69-2.20]	Illumina [9389922] (imputed)	N
1672	chr7	142481866	142481867	rs59320698	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	7q34	PRSS3P2, WBP1LP1, PRSS3P1, TRBJ2-1, TRBJ2-2, TRBJ2-2P, TRBJ2-3, TRBJ2-4, TRBJ2-5, TRBJ2-6, TRBJ2-7, PRSS1, TRBC2, TRBV29-1, TRBV30, PGBD4P1	rs59320698-?		2E-6		1.3095862	[1.18-1.40]	Illumina [9389922] (imputed)	N
1672	chr7	142483027	142483028	rs12539868	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	7q34	PRSS3P2, WBP1LP1, TRBJ2-1, TRBJ2-2, PRSS3P1, TRBJ2-2P, TRBJ2-3, TRBJ2-4, TRBJ2-5, TRBJ2-6, TRBJ2-7, TRBC2, PRSS1, TRBV30, TRBV29-1	rs12539868-?		2E-16		1.8063	[1.58-2.06]	Illumina [9389922] (imputed)	N
1672	chr7	142483031	142483032	rs144184641	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	7q34	PRSS3P2, WBP1LP1, TRBJ2-1, TRBJ2-2, PRSS3P1, TRBJ2-2P, TRBJ2-3, TRBJ2-4, TRBJ2-5, TRBJ2-6, TRBJ2-7, TRBC2, PRSS1, TRBV30, TRBV29-1	rs144184641-?		7E-19		1.8983	[1.66-2.17]	Illumina [9389922] (imputed)	N
1672	chr7	142483514	142483515	rs11762011	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	7q34	PRSS3P2, WBP1LP1, TRBJ2-1, TRBJ2-2, TRBJ2-2P, TRBJ2-3, TRBJ2-4, TRBJ2-5, TRBJ2-6, TRBJ2-7, PRSS3P1, TRBC2, PRSS1, TRBV30, TRBV29-1	rs11762011-?		2E-18		1.7448962	[1.56-2.00]	Illumina [9389922] (imputed)	N
1672	chr7	142484060	142484061	rs7795886	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	7q34	PRSS3P2, WBP1LP1, TRBJ2-1, TRBJ2-2, TRBJ2-2P, TRBJ2-3, TRBJ2-4, TRBJ2-5, TRBJ2-6, TRBJ2-7, PRSS3P1, TRBC2, PRSS1, TRBV30, TRBV29-1	rs7795886-?		2E-12		1.4852	[1.34-1.65]	Illumina [9389922] (imputed)	N
1672	chr7	142484307	142484308	rs149506335	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	7q34	PRSS3P2, WBP1LP1, TRBJ2-1, TRBJ2-2, TRBJ2-2P, TRBJ2-3, TRBJ2-4, TRBJ2-5, TRBJ2-6, TRBJ2-7, PRSS3P1, TRBC2, PRSS1, TRBV30, TRBV29-1	rs149506335-?		2E-18		1.7766	[1.57-2.01]	Illumina [9389922] (imputed)	N
1672	chr7	142485028	142485029	rs78907924	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	7q34	WBP1LP1, PRSS3P2, TRBJ2-1, TRBJ2-2, TRBJ2-2P, TRBJ2-3, TRBJ2-4, TRBJ2-5, TRBJ2-6, TRBJ2-7, PRSS3P1, TRBC2, PRSS1, TRBV30, TRBV29-1	rs78907924-?		2E-23		2.0391517	[1.79-2.30]	Illumina [9389922] (imputed)	N
1672	chr7	142485103	142485104	rs4457242	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	7q34	TRBV29-1, TRBV30, WBP1LP1, PRSS3P2, TRBJ2-1, TRBJ2-2, TRBJ2-2P, TRBJ2-3, TRBJ2-4, TRBJ2-5, TRBJ2-6, TRBJ2-7, PRSS3P1, TRBC2, PRSS1	rs4457242-?		8E-18		1.6281341	[1.47-1.80]	Illumina [9389922] (imputed)	N
1672	chr7	142486039	142486040	rs192514996	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	7q34	WBP1LP1, PRSS3P2, TRBJ2-1, TRBJ2-2, TRBJ2-2P, TRBJ2-3, TRBJ2-4, TRBJ2-5, TRBJ2-6, TRBJ2-7, TRBC2, PRSS3P1, TRBV30, PRSS1, TRBV29-1	rs192514996-?		5E-18		2.1017	[1.79-2.46]	Illumina [9389922] (imputed)	N
1672	chr7	142487345	142487346	rs2734221	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	7q34	WBP1LP1, PRSS3P2, TRBJ2-1, TRBJ2-2, TRBJ2-2P, TRBJ2-3, TRBJ2-4, TRBJ2-5, TRBJ2-6, TRBJ2-7, TRBC2, PRSS3P1, TRBV30, PRSS1, TRBV29-1	rs2734221-?		1E-22		1.5288182	[1.41-1.70]	Illumina [9389922] (imputed)	N
1672	chr7	142491574	142491575	rs17777717	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	7q34	TRBJ2-1, TRBJ2-2, TRBJ2-2P, TRBJ2-3, TRBJ2-4, TRBJ2-5, TRBJ2-6, TRBJ2-7, WBP1LP1, TRBC2, PRSS3P2, TRBV30, PRSS3P1, PRSS1, TRBV29-1	rs17777717-?		1E-7		1.3678019	[1.22-1.50]	Illumina [9389922] (imputed)	N
1672	chr7	142496163	142496164	rs57586289	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	7q34	TRBJ2-7, TRBJ2-6, TRBJ2-5, TRBJ2-4, TRBJ2-3, TRBJ2-2P, TRBJ2-2, TRBJ2-1, TRBC2, WBP1LP1, PRSS3P2, TRBV30, PRSS3P1, PRSS1, TRBV29-1	rs57586289-?		5E-13		1.3611	[1.27-1.50]	Illumina [9389922] (imputed)	N
1672	chr7	142498108	142498109	rs1800907	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	7q34	TRBC2, TRBJ2-7, TRBJ2-6, TRBJ2-5, TRBJ2-4, TRBJ2-3, TRBJ2-2P, TRBJ2-2, TRBJ2-1, WBP1LP1, TRBV30, PRSS3P2, PRSS3P1, PRSS1, TRBV29-1	rs1800907-?		8E-14		1.4134276	[1.30-1.50]	Illumina [9389922] (imputed)	N
1672	chr7	142498522	142498523	rs1799886	30807572	Gong J	2019-02-26	PLoS Genet	Genetic association and transcriptome integration identify contributing genes and tissues at cystic fibrosis modifier loci.	Meconium ileus in cystic fibrosis	1,115 European ancestry cases, 5,655 European ancestry controls	NA	7q34	PRSS1	rs1799886-T	0.55	2E-7		1.33	NR	Illumina [8763019] (imputed)	N
1672	chr7	142498522	142498523	rs1799886	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	7q34	TRBC2, TRBJ2-7, TRBJ2-6, TRBJ2-5, TRBJ2-4, TRBJ2-3, TRBJ2-2P, TRBJ2-2, TRBJ2-1, WBP1LP1, TRBV30, PRSS3P2, PRSS3P1, PRSS1, TRBV29-1	rs1799886-?		5E-7		1.2639029	[1.16-1.40]	Illumina [9389922] (imputed)	N
1672	chr7	142502286	142502287	rs3114479	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	7q34	TRBC2, TRBJ2-7, TRBJ2-6, TRBJ2-5, TRBJ2-4, TRBJ2-3, TRBJ2-2P, TRBV30, TRBJ2-2, TRBJ2-1, WBP1LP1, PRSS3P2, PRSS3P1, PRSS1	rs3114479-?		4E-7		1.2419275	[1.15-1.40]	Illumina [9389922] (imputed)	N
1672	chr7	142505021	142505022	rs62473585	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PRSS2	5,364 Icelandic ancestry individuals	NA	7q34		rs62473585-A	0.08398	8E-18		0.291579	[0.23-0.36] unit decrease	Illumina [7506463] (imputed)	N
1672	chr7	142505153	142505154	rs3134906	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals		TRBV30	rs3134906-A	0.4959799	4E-13	(EA, Trypsin-2)	0.3079	[0.23-0.39] unit increase	Affymetrix [509946]	N
1672	chr7	142506684	142506685	rs762691	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	7q34	TRBV30, TRBC2, TRBJ2-7, TRBJ2-6, TRBJ2-5, TRBJ2-4, TRBJ2-3, TRBJ2-2P, TRBJ2-2, TRBJ2-1, WBP1LP1, PRSS3P2, PRSS3P1, PRSS1, EPHB6	rs762691-?		2E-7		1.2461059	[1.15-1.40]	Illumina [9389922] (imputed)	N
1672	chr7	142511034	142511035	rs12540839	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	7q34	TRBV30, TRBC2, TRBJ2-7, TRBJ2-6, TRBJ2-5, TRBJ2-4, TRBJ2-3, TRBJ2-2P, TRBJ2-2, TRBJ2-1, WBP1LP1, PRSS3P2, PRSS3P1, EPHB6	rs12540839-?		3E-6		1.7565432	[1.41-2.20]	Illumina [9389922] (imputed)	N
1672	chr7	142542518	142542519	rs62473589	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	7q34	NR	rs62473589-G	0.098	4E-15	(Trypsin-2, PRSS2.5034.79.1)	0.35	[0.27-0.43] unit decrease	Affymetrix [10572788] (imputed)	N
1672	chr7	142552546	142552547	rs7789303	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein EPHB6	5,366 Icelandic ancestry individuals	NA	7q34		rs7789303-G	0.2979	7E-38		0.251388	[0.21-0.29] unit decrease	Illumina [7506463] (imputed)	N
1672	chr7	142552546	142552547	rs7789303	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein EPHB6	5,358 Icelandic ancestry individuals	NA	7q34		rs7789303-G	0.2979	2E-28		0.215691	[0.18-0.25] unit decrease	Illumina [7506463] (imputed)	N
1672	chr7	142552546	142552547	rs7789303	34330890	Ip HF	2021-07-30	Transl Psychiatry	Genetic association study of childhood aggression across raters, instruments, and age.	Childhood aggressive behavior	87,485 European ancestry individuals	NA	7q34		rs7789303-G	0.275669539	9E-6		0.014420783	[0.0081-0.0208] unit decrease	Affymetrix, Illumina [up to 7284995] (imputed)	N
1672	chr7	142552546	142552547	rs7789303	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	7q34	EPHB6	rs7789303-A	0.7246875	9E-15	(EPHB6, 9261_14_3)	0.20551164	[0.15-0.26] unit increase	Illumina [> 1000000] (imputed)	N
1672	chr7	142552546	142552547	rs7789303	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	7q34	EPHB6	rs7789303-A	0.7246875	6E-20	(EPHB6, 5078_82_3)	0.23870154	[0.19-0.29] unit increase	Illumina [> 1000000] (imputed)	N
1672	chr7	142552546	142552547	rs7789303	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	7q34	EPHB6	rs7789303-G	0.273	2E-32	(Ephrin type-B receptor 6, EPHB6.5078.82.3)	0.32	[0.26-0.38] unit decrease	Affymetrix [10572788] (imputed)	N
1672	chr7	142572303	142572304	rs4987704	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	7q34	TRPV6, RP11-114L10.2, EPHB6, TRPV5	rs4987704-?		2E-6		1.404692	[1.23-1.60]	Illumina [9389922] (imputed)	N
1672	chr7	142572462	142572463	rs4987703	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	7q34		rs4987703-T	NR	2E-9		0.0693	[0.047-0.092] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
1672	chr7	142572648	142572649	rs4987668	32752121	Nedoszytko B	2020-07-31	Int J Mol Sci	Results from a Genome-Wide Association Study (GWAS) in Mastocytosis Reveal New Gene Polymorphisms Associated with WHO Subgroups.	Mastocytosis	234 European ancestry cases, 5,606 European ancestry controls	NA	7q34	TRPV6	rs4987668-C	0.02548	1E-6		2.598	[2.2-2.99]	Illumina [281811]	N
1672	chr7	142585005	142585006	rs4987595	25993607	de Moor MH	2015-05-20	JAMA Psychiatry	Meta-analysis of Genome-wide Association Studies for Neuroticism, and the Polygenic Association With Major Depressive Disorder.	Neuroticism	Up to 627 Cilento (founder/genetic isolate) individuals, up to 2,296 Erasmus Rucphen (founder/genetic isolate) individuals, up to 1,650 Orcadian (founder/genetic isolate) individuals, up to 909 Vis (founder/genetic isolate) individuals, up to 58,179 European ancestry individuals	Up to 9,786 European ancestry individuals	7q34	NR	rs4987595-T	NR	1E-6		0.044	[0.024-0.064] unit decrease	Affymetrix, Illumina, Perlegen [6949614] (imputed)	N
1672	chr7	142595828	142595828	rs575403075	31906708	Levey DF	2020-01-07	Am J Psychiatry	Reproducible Genetic Risk Loci for Anxiety: Results From ~200,000 Participants in the Million Veteran Program.	Anxiety	175,163 European ancestry individuals, 24,448 African American individuals	NA	7q34	TRPV6	rs575403075-?	NR	3E-8	(AA)			Affymetrix [at least 723305] (imputed)	N
1672	chr7	142601617	142601618	rs148482715	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	7q34	TRPV5	rs148482715-T	0.0216790841792219	3E-7	(G_Sporobacter_RNT)	0.554215	[0.34-0.77] unit increase	Illumina [7711310] (imputed)	N
1673	chr7	142607300	142607301	rs4252505	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	7q34	NR	rs4252505-G	0.1846	5E-9		0.0413	[0.028-0.055] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1673	chr7	142650474	142650475	rs3757853	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	7q34	KEL	rs3757853-G	0.405446	2E-16		0.018823657	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1673	chr7	142650474	142650475	rs3757853	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	7q34	KEL	rs3757853-G	0.405438	2E-17		0.01925577	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1673	chr7	142650474	142650475	rs3757853	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	7q34	KEL	rs3757853-G	0.40544	8E-17		0.018914433	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1673	chr7	142651353	142651354	rs8176059	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	7q34	NR	rs8176059-A	NR	1E-9		0.071	[0.048-0.094] unit decrease	Affymetrix [9000000] (imputed)	N
1673	chr7	142651353	142651354	rs8176059	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	7q34	KEL	rs8176059-A	0.011206	2E-15		0.084734745	[0.064-0.106] unit increase	Affymetrix [93095623] (imputed)	N
1673	chr7	142651353	142651354	rs8176059	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	7q34	KEL	rs8176059-A	0.0113	2E-15		0.1338973	[0.1-0.17] unit increase	Affymetrix [~ 2500000] (imputed)	N
1673	chr7	142651353	142651354	rs8176059	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	7q34	KEL	rs8176059-A	0.0113	7E-9		0.09839432	[0.065-0.132] unit increase	Affymetrix [~ 2500000] (imputed)	N
1673	chr7	142651353	142651354	rs8176059	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	7q34	KEL	rs8176059-A	0.0113	4E-9		0.09995991	[0.067-0.133] unit increase	Affymetrix [~ 2500000] (imputed)	N
1673	chr7	142663078	142663079	rs180741377	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	7q34	KEL, C7orf34, TRPV5, OR9A2	rs180741377-?		3E-6		2.0588841	[1.54-2.70]	Illumina [9389922] (imputed)	N
1673	chr7	142674059	142674060	rs7790515	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	7q34	NR	rs7790515-?	NR	4E-7				Affymetrix [NR]	N
1674	chr7	142749842	142749843	rs145762495	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Chronic lymphocytic leukemia	764 White British ancestry cases, 272,079 White British ancestry controls	NA	7q34		rs145762495-?	NR	5E-6		4.67952	[4.02-5.34]	NR [663083]	N
1674	chr7	142826797	142826798	rs28672333	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder in trauma-unexposed individuals	9,487 European ancestry cases, 39,677 European ancestry controls	NA	7q34	NR	rs28672333-A	0.0727552	2E-7		1.161	[1.1-1.22]	Affymetrix [7791636] (imputed)	N
1674	chr7	142835238	142835239	rs9986765	27153935	Zhang CE	2016-05-06	J Dermatol	Variation at HLA-DPB1 is associated with dermatomyositis in Chinese population.	Dermatomyositis	127 Han Chinese ancestry case, 1,566 Han Chinese ancestry controls	NA		PIP	rs9986765-G	0.05	7E-7		2.71	[1.80-4.08]	Illumina [812602]	N
1674	chr7	142836202	142836203	rs73170678	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PIP	5,361 Icelandic ancestry individuals	NA	7q34		rs73170678-T	0.1297	6E-40		0.362936	[0.31-0.42] unit increase	Illumina [7506463] (imputed)	N
1675	chr7	142881539	142881540	rs4726600	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	7q34	PIP	rs4726600-G	0.74109375	8E-12	(PIP, 6060_2_3)	0.18804458	[0.13-0.24] unit decrease	Illumina [> 1000000] (imputed)	N
1675	chr7	142988725	142988726	rs4647288	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PIP	5,361 Icelandic ancestry individuals	NA	7q34		rs4647288-A	0.01635	5E-20		0.660344	[0.52-0.8] unit decrease	Illumina [7506463] (imputed)	N
1675	chr7	142988725	142988726	rs4647288	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C6orf58	5,366 Icelandic ancestry individuals	NA	7q34		rs4647288-A	0.01635	3E-18		0.636596	[0.49-0.78] unit decrease	Illumina [7506463] (imputed)	N
1676	chr7	143080059	143080060	rs11978404	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	7q34	NR	rs11978404-T	NR	1E-10		0.0415	[0.029-0.054] unit increase	Affymetrix [9000000] (imputed)	N
1676	chr7	143081941	143081942	rs11772895	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	7q34		rs11772895-C	NR	6E-16		0.02	[0.015-0.025] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
1676	chr7	143081941	143081942	rs11772895	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	349,856 European ancestry individuals, 91,908 East Asian ancestry individuals	NA	7q34		rs11772895-C	NR	1E-16		0.018	[0.014-0.022] unit increase	Affymetrix, Illumina [20529536] (imputed)	N
1676	chr7	143081941	143081942	rs11772895	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	7q34	ZYX	rs11772895-C	0.277358	7E-11		0.016179629	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1676	chr7	143081941	143081942	rs11772895	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	7q34	ZYX	rs11772895-C	0.277335	3E-17		0.020935468	[0.016-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1676	chr7	143081941	143081942	rs11772895	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	7q34	ZYX	rs11772895-C	0.277387	4E-55		0.03889878	[0.034-0.044] unit increase	Affymetrix [93095623] (imputed)	N
1676	chr7	143081941	143081942	rs11772895	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	7q34	ZYX	rs11772895-C	0.277394	3E-57		0.039597612	[0.035-0.044] unit increase	Affymetrix [93095623] (imputed)	N
1676	chr7	143081941	143081942	rs11772895	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q34	NR	rs11772895-C	0.245298	6E-22				Affymetrix, Illumina [23467995] (imputed)	N
1676	chr7	143081941	143081942	rs11772895	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	7q34	NR	rs11772895-C	0.27681	2E-22		0.020603	[0.016-0.025] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
1676	chr7	143081941	143081942	rs11772895	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q34	NR	rs11772895-C	0.246082	9E-48				Affymetrix, Illumina [19905671] (imputed)	N
1676	chr7	143081941	143081942	rs11772895	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	7q34	NR	rs11772895-C	0.277783	9E-50		0.034127	[0.03-0.039] SD unit increase	Affymetrix, Illumina [50036608] (imputed)	N
1676	chr7	143081941	143081942	rs11772895	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count (basophil)	171,846 European ancestry individuals	NA	7q34	ZYX	rs11772895-C	0.2788	3E-9		0.02311239	[0.015-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
1676	chr7	143082533	143082534	rs71552657	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	7q34		rs71552657-G	0.789	1E-8				Affymetrix [10369434] (imputed)	N
1676	chr7	143086009	143086010	rs73154206	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7q34	NR	rs73154206-T	0.01045	8E-9	(MYH9)	0.3818	NR unit increase	Illumina [1671387] (imputed)	N
1676	chr7	143086009	143086010	rs73154206	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7q34	NR	rs73154206-T	0.01045	5E-10	(MYL6)	0.112	NR unit increase	Illumina [1671387] (imputed)	N
1676	chr7	143088822	143088823	rs1804527	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	7q34	NR	rs1804527-?	NR	5E-67	(EA, Ephrin type-A receptor 1)			Affymetrix [509946]	N
1676	chr7	143092268	143092269	rs34372369	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	7q34		rs34372369-A	NR	1E-19		0.0457	[0.036-0.055] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
1676	chr7	143092268	143092269	rs34372369	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	7q34		rs34372369-A	NR	5E-15		0.044	[0.033-0.055] unit increase	Affymetrix, Illumina [20528270] (imputed)	N
1676	chr7	143092268	143092269	rs34372369	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	7q34	EPHA1	rs34372369-G	0.948243	4E-27		0.0119811	[0.0097-0.0143] unit decrease	Affymetrix [13995440] (imputed)	N
1676	chr7	143092268	143092269	rs34372369	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	7q34	NR	rs34372369-A	0.05172	4E-11		0.003306	[0.0023-0.0043] unit increase	Affymetrix [NR] (imputed)	N
1676	chr7	143092268	143092269	rs34372369	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	7q34	NR	rs34372369-A	0.05169699999999999	2E-15		0.0160977	[0.012-0.02] unit increase	Affymetrix [16582909] (imputed)	N
1676	chr7	143092268	143092269	rs34372369	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	7q34	NR	rs34372369-A	0.05182600000000004	2E-14		0.0211673	[0.016-0.026] unit increase	Affymetrix [16582621] (imputed)	N
1676	chr7	143092268	143092269	rs34372369	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	7q34	NR	rs34372369-A	0.05169699999999999	7E-13		0.0166011	[0.012-0.021] unit increase	Affymetrix [16582965] (imputed)	N
1676	chr7	143092268	143092269	rs34372369	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	7q34	NR	rs34372369-A	0.05182600000000004	8E-14		0.0216096	[0.016-0.027] unit increase	Affymetrix [16582614] (imputed)	N
1676	chr7	143097099	143097100	rs4725617	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	7q35	EPHA1	rs4725617-G	0.9021875	2E-223	(EPHA1, 3431_54_2)	1.2019784	[1.13-1.27] unit increase	Illumina [> 1000000] (imputed)	N
1676	chr7	143097099	143097100	rs4725617	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	7q35	EPHA1, ZYX, EPHA1-AS1	rs4725617-A	0.0892678	3E-80	(EA, Ephrin type-A receptor 1)	1.33	[1.2-1.46] unit decrease	Affymetrix [509946]	N
1676	chr7	143099132	143099133	rs10808026	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	7q35		rs10808026-A	0.2556	2E-10		51.29085	z score increase	NR [6814003]	N
1676	chr7	143099132	143099133	rs10808026	30805717	Zhu Z	2019-02-25	Hum Genet	Shared genetic architecture between metabolic traits and Alzheimer's disease: a large-scale genome-wide cross-trait analysis.	Alzheimer's disease or HDL levels (pleiotropy)	54,162 European ancestry cases, 60,812 European ancestry individuals	NA	7q35	EPHA1, EPHA1-AS1, ZYX	rs10808026-?		1E-10				NR [NR]	N
1676	chr7	143103216	143103217	rs4421280	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	7q35	EPHA1	rs4421280-A	0.927	9E-83	(Ephrin type-A receptor 1, EPHA1.3431.54.2)	0.88	[0.78-0.98] unit increase	Affymetrix [10572788] (imputed)	N
1676	chr7	143103480	143103481	rs56402156	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	7q35	NR	rs56402156-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
1676	chr7	143104330	143104331	rs3935067	34493870	Wightman DP	2021-09-07	Nat Genet	A genome-wide association study with 1,126,563 individuals identifies new risk loci for Alzheimer's disease.	Late-onset Alzheimer's disease	90,338 cases, 1,036,225 controls	NA	7q35		rs3935067-?	NR	5E-11				Illumina [NR] (imputed)	N
1676	chr7	143104330	143104331	rs3935067	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	7q35	NR	rs3935067-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
1676	chr7	143107587	143107588	rs12703526	33589840	Schwartzentruber J	2021-02-15	Nat Genet	Genome-wide meta-analysis, fine-mapping and integrative prioritization implicate new Alzheimer's disease risk genes.	Alzheimer's disease or family history of Alzheimer's disease	472,868 European ancestry individuals	NA	7q35	EPHA1	rs12703526-?	NR	1E-11		0.0654321	unit decrease	NR [10687077] (imputed)	N
1676	chr7	143108157	143108158	rs7810606	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Family history of Alzheimer's disease	47,793 European ancestry cases, 328,320 European ancestry controls	NA	7q35	EPHA1	rs7810606-T	NR	1E-6		4.891	NR z-score decrease	Affymetrix [10847151] (imputed)	N
1676	chr7	143108157	143108158	rs7810606	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	7q35	EPHA1	rs7810606-T	0.5	4E-11		6.62	NR z-unit decrease	Affymetrix, Illumina [up to 10847151] (imputed)	N
1676	chr7	143108157	143108158	rs7810606	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	7q35	NR	rs7810606-?	NR	1E-11				Affymetrix [7795605] (imputed)	N
1676	chr7	143108840	143108841	rs11763230	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease (late onset)	24,087 European ancestry cases, 55,058 European ancestry controls	NA	7q35	EPHA1	rs11763230-T	NR	3E-11		6.6686625	NR z-score decrease	Illumina [up to 9862738] (imputed)	N
1676	chr7	143109138	143109139	rs11767557	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein EPHA1	5,359 Icelandic ancestry individuals	NA	7q35		rs11767557-C	0.2093	2E-60		0.356239	[0.31-0.4] unit increase	Illumina [7506463] (imputed)	N
1676	chr7	143109138	143109139	rs11767557	21460841	Naj AC	2011-04-03	Nat Genet	Common variants at MS4A4/MS4A6E, CD2AP, CD33 and EPHA1 are associated with late-onset Alzheimer's disease.	Alzheimer's disease (late onset)	8,309 European ancestry cases, 7,366 European ancestry controls	10,523 European ancestry cases, 28,231 European ancestry controls	7q35	EPHA1	rs11767557-?	0.81	6E-10		1.11	[1.08-1.16]	Affymetrix, Illumina [2324889] (imputed)	N
1676	chr7	143109207	143109208	rs75045569	25778476	Jun G	2015-03-17	Mol Psychiatry	A novel Alzheimer disease locus located near the gene encoding tau protein.	Alzheimer's disease in APOE e4- carriers	7,184 cases, 26,968 controls	718 European ancestry cases, 1,699 European ancestry controls	7q35	EPHA1, TAS2R62P	rs75045569-T	0.83	8E-6		1.1494253	[1.08-1.22]	NR [NR]	N
1676	chr7	143110761	143110762	rs11771145	31473137	Moreno-Grau S	2019-08-13	Alzheimers Dement	Genome-wide association analysis of dementia and its clinical endophenotypes reveal novel loci associated with Alzheimer's disease and three causality networks: The GR@ACE project.	Alzheimer's disease	4,120 Spanish ancestry cases, 17,008 cases, 3,289 Spanish ancestry controls, 37,154 controls	1,943 Spanish ancestry cases, 8,572 cases, 3,016 Spanish ancestry controls, 11,312 controls	7q35	EPHA1	rs11771145-?	NR	5E-10		1.098901	[1.06-1.14]	Affymetrix [up to 7055881] (imputed)	N
1676	chr7	143110761	143110762	rs11771145	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	7q35	EPHA1	rs11771145-A	0.3085	1E-6		4.88	NR z-unit decrease	Affymetrix, Illumina [up to 10847151] (imputed)	N
1676	chr7	143110761	143110762	rs11771145	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease (late onset)	24,087 European ancestry cases, 55,058 European ancestry controls	NA	7q35	EPHA1	rs11771145-A	NR	4E-8		5.49	NR z-score decrease	Illumina [up to 9862738] (imputed)	N
1676	chr7	143110761	143110762	rs11771145	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	7q35	NR	rs11771145-?	NR	4E-11		1.0548515	[1.04-1.07]	Affymetrix [7795605] (imputed)	N
1676	chr7	143110761	143110762	rs11771145	24162737	Lambert JC	2013-10-27	Nat Genet	Meta-analysis of 74,046 individuals identifies 11 new susceptibility loci for Alzheimer's disease.	Alzheimer's disease (late onset)	17,008 European ancestry cases, 37,154 European ancestry controls	8,572 European ancestry cases, 11,312 European ancestry controls	7q35	EPHA1	rs11771145-G	0.662	1E-13		1.1111	[1.08-1.14]	Illumina [7055881] (imputed)	N
1676	chr7	143116060	143116061	rs62472729	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	7q35	NR	rs62472729-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
1676	chr7	143121620	143121621	rs10265814	33589840	Schwartzentruber J	2021-02-15	Nat Genet	Genome-wide meta-analysis, fine-mapping and integrative prioritization implicate new Alzheimer's disease risk genes.	Alzheimer's disease or family history of Alzheimer's disease	472,868 European ancestry individuals	NA	7q35	EPHA1	rs10265814-?	NR	3E-10		0.0607201	unit increase	NR [10687077] (imputed)	N
1676	chr7	143124295	143124296	rs7805776	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	7q35	NR	rs7805776-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
1677	chr7	143132182	143132183	rs9640386	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	7q35	NR	rs9640386-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
1677	chr7	143170111	143170112	rs78689898	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7q35	NR	rs78689898-T	0.01045	5E-9	(COQ9)	0.01957	NR unit increase	Illumina [1671387] (imputed)	N
1679	chr7	143433023	143433024	rs140120210	31049640	Chen J	2019-05-02	Diabetologia	Genome-wide association study of type 2 diabetes in Africa.	Type 2 diabetes	2,633 African ancestry cases, 1,714 African ancestry controls	NA	7q35	TCAF2, CTAGE6	rs140120210-C	0.986	8E-6		2.13	[1.50-3.01]	Affymetrix, Illumina [12148595] (imputed)	N
1680	chr7	143619046	143619047	rs73462438	29495422	Xu H	2018-02-26	J Pers Med	A Genome-Wide Association Study of Idiopathic Dilated Cardiomyopathy in African Americans.	Idiopathic dilated cardiomyopathy	662 African American cases, 1,138 African American controls	NA	7q35	FAM115A, OR2F2	rs73462438-G	0.019	5E-6		2.41	[1.62-3.6]	Affymetrix [up to 27494467] (imputed)	N
1681	chr7	143723136	143723137	rs10249294	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fruit consumption	335,576 European ancestry individuals	NA	7q35	FAM115A, OR2F2, OR2F1, OR6B1, OR2A5, OR2A25, OR2A12, OR2A2, OR2A14, CTAGE4, ARHGEF35, OR2A7, CTAGE8, NOBOX, TPK1	rs10249294-?	NR	1E-48		0.036761	[0.032-0.042] unit decrease	Affymetrix [25921788] (imputed)	N
1681	chr7	143741579	143741580	rs11976180	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	7q35	OR2A5	rs11976180-C	0.195	7E-6	(Light activity )	0.03	[NR] min/d increase	Illumina [899892]	N
1682	chr7	143797345	143797346	rs12703572	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Thalamus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	7q35	NR	rs12703572-?		8E-6				Illumina [4322238] (imputed)	N
1684	chr7	144048901	144048902	rs62485509	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	7q35	NR	rs62485509-T	0.2292	4E-12	(EA)	0.0545	[0.039-0.07] unit decrease	Illumina [~ 11800000] (imputed)	N
1684	chr7	144074928	144074929	rs720475	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Parabacteroides)	1,068 Japanese ancestry individuals	NA	7q35	ARHGEF5	rs720475-A	0.01	5E-6		0.227	[0.13-0.32] unit decrease	Illumina [6380737] (imputed)	N
1684	chr7	144074928	144074929	rs720475	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	7q35		rs720475-A	NR	2E-11		0.95	[0.94-0.97]	Affymetrix, Illumina [NR] (imputed)	N
1684	chr7	144074928	144074929	rs720475	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	7q35	NOBOX, ARHGEF6	rs720475-G	0.75	1E-11	(EA)	1.0416667	[1.02-1.06] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
1684	chr7	144074928	144074929	rs720475	27432226	Kar SP	2016-07-17	Cancer Discov	Genome-Wide Meta-Analyses of Breast, Ovarian, and Prostate Cancer Association Studies Identify Multiple New Susceptibility Loci Shared by at Least Two Cancer Types.	Breast cancer, ovarian cancer or prostate cancer (pleiotropy)	62,533 European ancestry breast cancer female cases, 60,976 European ancestry controls, 15,437 European ancestry invasive epithelial ovarian cancer female cases, 30,845 European ancestry controls, 34,379 European ancestry prostate cancer male cases, 33,164 European ancestry controls	NA	7q35	ARHGEF5	rs720475-A	0.25455	7E-12		0.0495	[0.035-0.064] unit decrease	Illumina [NR]	N
1684	chr7	144074928	144074929	rs720475	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	46,785 European ancestry cases, 42,892 European ancestry controls	NA	7q35	NR	rs720475-G	0.75	1E-8		1.0638298	[1.04-1.09]	Affymetrix, Illumina [~ 14000000] (imputed)	N
1684	chr7	144074928	144074929	rs720475	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	15,748 European ancestry cases, 18,084 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls	7q35	NR	rs720475-G	0.75	4E-10		1.0638298	[1.04-1.09]	Affymetrix, Illumina [~ 11600000] (imputed)	N
1684	chr7	144074928	144074929	rs720475	23535729	Michailidou K	2013-04-01	Nat Genet	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	7q35	ARHGEF5, NOBOX	rs720475-G	0.75	7E-11		1.06	[1.04-1.09]	Affymetrix, Illumina [~ 2600000] (imputed)	N
1684	chr7	144075116	144075117	rs185205268	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	7q35	ARHGEF5	rs185205268-G	0.998	4E-6	(AA)	0.236	unit increase	Illumina [NR] (imputed)	N
1684	chr7	144096157	144096158	rs112190116	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Age at menopause	approximately 143,000 European ancestry individuals	NA	7q35		rs112190116-?	NR	3E-11				NR [~ 8900000] (imputed)	N
1684	chr7	144130509	144130510	rs12539814	29208002	Kim M	2017-12-06	Lipids Health Dis	EPHA6 rs4857055 C > T polymorphism associates with hypertension through triglyceride and LDL particle size in the Korean population.	Diastolic blood pressure	2146 East Asian ancestry individuals	NA	7q35	NOBOX	rs12539814-?	NR	4E-6				Affymetrix [394222]	N
1684	chr7	144133098	144133099	rs182093911	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	7q35	RP4-545C24.5	rs182093911-A	0.9988	5E-6		1.0226	[0.58-1.46] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1684	chr7	144158641	144158642	rs13247723	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fruit consumption	335,576 European ancestry individuals	NA	7q35	FAM115A, OR2F2, OR2F1, OR6B1, OR2A5, OR2A25, OR2A12, OR2A2, OR2A14, CTAGE4, ARHGEF35, OR2A7, CTAGE8, NOBOX, TPK1	rs13247723-?	NR	5E-8		0.014414	[0.0092-0.0196] unit decrease	Affymetrix [25921788] (imputed)	N
1684	chr7	144162035	144162036	rs566321594	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	7q35	NR	rs566321594-?	NR	1E-7		0.0087543	[0.0055-0.012] unit increase	Affymetrix [805426] (imputed)	N
1684	chr7	144174290	144174291	rs13230714	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	7q35	NR	rs13230714-G	0.3026	1E-6	(EA)	0.0338	[0.02-0.047] unit decrease	Illumina [~ 11800000] (imputed)	N
1685	chr7	144230825	144230826	rs115277108	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	7q35	NR	rs115277108-?	NR	3E-6		5.1429	[0.66-9.62] unit increase	Illumina [at least 560000] (imputed)	N
1685	chr7	144288767	144288768	rs145770279	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,963 Sub-Saharan African ancestry females	NA	7q35		rs145770279-C	0.98286	6E-6		0.0459448	[0.026-0.066] unit increase	Illumina [13900000] (imputed)	N
1686	chr7	144323968	144323969	rs6464597	33669428	Franco LAM	2021-02-16	Int J Mol Sci	Pharmacogenomic Profile and Adverse Drug Reactions in a Prospective Therapeutic Cohort of Chagas Disease Patients Treated with Benznidazole.	Adverse response to benznidazole in Chagas disease	61 Hispanic/Latino or unknown ancestry cases, 29 Hispanic/Latino or unknown ancestry controls	NA	7q35	NR	rs6464597-C	NR	2E-6				Affymetrix [at least 811691] (imputed)	N
1686	chr7	144334807	144334808	rs17287011	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	7q35	NOBOX	rs17287011-?	NR	9E-6	(sorbitol)	0.31618312	[0.18-0.46] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1687	chr7	144477946	144477947	rs375080348	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris color (b* coordinate)	329 South Asian ancestry individuals		7q35	TPK1	rs375080348-A	0.228	3E-6		0.487	[0.29-0.69] unit increase	Illumina [640625] (imputed)	N
1687	chr7	144480289	144480290	rs79144590	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	7q35	TPK1	rs79144590-C	0.0179602687989006	2E-6	(F_Veillonellaceae_RNT)	0.500183	[0.29-0.71] unit increase	Illumina [7711310] (imputed)	N
1687	chr7	144483546	144483547	rs1731096	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Chronic lymphocytic leukemia	764 White British ancestry cases, 272,079 White British ancestry controls	NA	7q35		rs1731096-?	NR	1E-6		0.771068	[0.67-0.88]	NR [663083]	N
1688	chr7	144586810	144586811	rs10224227	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	7q35	LOC402715	rs10224227-?	NR	7E-6	(TAG 54:3)	0.6435766	[0.36-0.92] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1688	chr7	144634727	144634728	rs568629182	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Lean body mass	3,399 whole genome sequenced individuals, 11,801 European ancestry individuals	10,676 European ancestry individuals	7q35	EI24P4	rs568629182-T	0.0012	5E-6		1.5567	[0.89-2.23] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1688	chr7	144649989	144649990	rs58489616	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota relative abundance (bacterial taxa)	up to 858 Metropolitan French ancestry individuals	NA	7q35	NR	rs58489616-?	NR	2E-8	(Ruminococcus_gnavus)	0.529703	[0.35-0.71] unit increase	Illumina [5293637] (imputed)	N
1689	chr7	144726643	144726644	rs7806345	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (90 or 130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	7q35	intergenic	rs7806345-?	NR	4E-6		0.125	[0.054-0.196] unit decrease	Illumina [at least 13000000] (imputed)	N
1689	chr7	144828413	144828414	rs62495852	29532581	Hallfors J	2018-03-13	Addict Biol	Genome-wide association study in Finnish twins highlights the connection between nicotine addiction and neurotrophin signaling pathway.	Nicotine withdrawal symptom count	1,703 Finnish ancestry ever smoker individuals from up to 739 families	NA	7q35	NR	rs62495852-T	0.202	4E-6		0.42	[0.24-0.6] unit decrease	Illumina [9469131] (imputed)	N
1690	chr7	144839246	144839247	rs11766649	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Platelet-derived growth factor BB levels	8,293 Finnish ancestry individuals	NA	7q35	NR	rs11766649-G		4E-6		0.0908	[0.052-0.129] SD units decrease	NR [10700000] (imputed)	N
1690	chr7	144841530	144841531	rs10487524	20732626	Mick E	2010-05-14	J Am Acad Child Adolesc Psychiatry	Family-based genome-wide association scan of attention-deficit/hyperactivity disorder.	Attention deficit hyperactivity disorder	735 trios from 732 families	NA	7q35	LOC643308	rs10487524-T	0.15	9E-6		1.6	[NR]	Illumina [835136]	N
1690	chr7	144877903	144877904	rs79891433	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 5 levels	252 European ancestry individuals	NA	7q35		rs79891433-T	NR	8E-7		0.58515	[0.36-0.81] unit decrease	Illumina [NR] (imputed)	N
1690	chr7	144883471	144883472	rs10229222	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7q35	NR	rs10229222-T	0.01394	2E-8	(ME1)	0.09478	NR unit increase	Illumina [1671387] (imputed)	N
1690	chr7	144892085	144892086	rs12531488	20100581	Shen L	2010-01-22	Neuroimage	Whole genome association study of brain-wide imaging phenotypes for identifying quantitative trait loci in MCI and AD: A study of the ADNI cohort.	Brain imaging	175 European ancestry Alzheimer cases, 354 European ancestry amnestic mild cognitive impairment cases, 204 European ancestry controls	NA	7q35	LOC643308	rs12531488-?	NR	1E-6	(multiple phenotypes)			Illumina [530992]	N
1691	chr7	144968288	144968289	rs111367251	31164008	Mullins N	2019-06-05	Am J Psychiatry	GWAS of Suicide Attempt in Psychiatric Disorders and Association With Major Depression Polygenic Risk Scores.	Suicide attempts in major depressive disorder	1,622 European ancestry attempters, 8,786 European ancestry nonattempters	NA	7q35	NR	rs111367251-G	0.010000000000000009	3E-7		2.2222223	[1.64-3.03]	NR [8482392] (imputed)	N
1691	chr7	144996253	144996254	rs35080636	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	7q35	intergenic	rs35080636-C	0.0157962971232035	7E-6	(G_Bifidobacterium_HB)	1.05667	[0.6-1.52] unit decrease	Illumina [7711310] (imputed)	N
1691	chr7	145040149	145040150	rs28794645	28322283	Chibnik LB	2017-03-21	Mol Psychiatry	Susceptibility to neurofibrillary tangles: role of the PTPRD locus and limited pleiotropy with other neuropathologies.	Microscopic brain infarct	253 European ancestry cases, 656 European ancestry controls	369 individuals	7q35	NR	rs28794645-C	0.76	3E-6	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1691	chr7	145062739	145062740	rs10227393	25288136	Cornelis MC	2014-10-07	Mol Psychiatry	Genome-wide meta-analysis identifies six novel loci associated with habitual coffee consumption.	Coffee consumption	17,479 European ancestry high consumption individuals, 31,049 European ancestry no or low consumption individuals	6,497 European ancestry high consumption individuals, 432 African American high consumption individuals, 6,972 European ancestry no or low consumption individuals, 3,413 African American no or low consumption individuals	7q35	NR	rs10227393-C	NR	9E-6		0.08	[0.041-0.119] unit decrease	Affymetrix, Illumina [2376205] (imputed)	N
1691	chr7	145084001	145084002	rs59725556	33331911	Freidin MB	2020-12-17	Rheumatology (Oxford)	An association between chronic widespread pain and the gut microbiome.	Coprococcus comes	3,521 European or unknown ancestry individuals	NA	7q35		rs59725556-T	NR	6E-6		0.1074	[0.061-0.154] unit decrease	NR [4841651] (imputed)	N
1692	chr7	145206497	145206498	rs6952800	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CNTNAP2	5,364 Icelandic ancestry individuals	NA	7q35		rs6952800-A	0.4468	5E-119		0.415718	[0.38-0.45] unit increase	Illumina [7506463] (imputed)	N
1694	chr7	145363181	145363182	rs6979892	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CNTNAP2	5,364 Icelandic ancestry individuals	NA	7q35		rs6979892-G	0.2885	2E-222		0.604162	[0.57-0.64] unit increase	Illumina [7506463] (imputed)	N
1694	chr7	145378587	145378588	rs10274393	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	7q35	CNTNAP2	rs10274393-C	0.711	1E-60	(Contactin-associated protein-like 2, CNTNAP2.6965.19.3)	0.43	[0.37-0.49] unit decrease	Affymetrix [10572788] (imputed)	N
1694	chr7	145439364	145439365	rs1523723	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 10, width of nasal floor)	2,187 European ancestry individuals	NA	7q35	NR	rs1523723-T	0.09147	4E-6		0.2406	[0.14-0.34] unit increase	Illumina [10677593] (imputed)	N
1694	chr7	145443136	145443137	rs75246769	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 10, width of nasal floor)	2,187 European ancestry individuals	NA	7q35	NR	rs75246769-C	0.09078	4E-6		0.2406	[0.14-0.34] unit increase	Illumina [10677593] (imputed)	N
1695	chr7	145500129	145500130	rs6948800	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Initial pursuit acceleration	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	7q35	CNTNAP2	rs6948800-A	0.3007	3E-6	(African)			Illumina [4404269] (imputed)	N
1695	chr7	145561518	145561519	rs144958708	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Lawsonibacter sp900066645 abundance in stool	5,959 Finnish ancestry individuals	NA	7q35		rs144958708-T	0.0397698	5E-8		0.117332	[0.075-0.159] unit increase	Illumina [7980478] (imputed)	N
1695	chr7	145614764	145614765	rs10454319	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-5 levels	3,364 Finnish ancestry individuals	NA	7q35	NR	rs10454319-G		8E-6		0.1287	[0.072-0.185] SD units increase	NR [10700000] (imputed)	N
1696	chr7	145640605	145640606	rs143577122	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	7q35	intergenic	rs143577122-C	0.9538	1E-6		1.1713991		NR [9372253] (imputed)	N
1696	chr7	145658807	145658808	rs117796827	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Triglycerides levels in small HDL meal response (LMM)	11,410 individuals	NA	7q35		rs117796827-T	0.0165579	4E-8		0.221563	[0.16-0.28] unit increase	Illumina [7568622] (imputed)	N
1696	chr7	145715596	145715597	rs150053366	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Hepatitis A	2,442 European ancestry cases, 217,137 European ancestry controls	NA	7q35	NR	rs150053366-?	NR	8E-6		0.4873	[0.28-0.69] unit decrease	Illumina [at least 560000] (imputed)	N
1696	chr7	145719948	145719949	rs6943324	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	7q35	CNTNAP2	rs6943324-C	0.57203125	5E-15	(CNTNAP2, 6965_19_3)	0.19811118	[0.15-0.25] unit decrease	Illumina [> 1000000] (imputed)	N
1697	chr7	145793960	145793961	rs117238688	26423011	Wain LV	2015-09-27	Lancet Respir Med	Novel insights into the genetics of smoking behaviour, lung function, and chronic obstructive pulmonary disease (UK BiLEVE): a genetic association study in UK Biobank.	Smoking status (heavy vs never)	24,457 European ancestry heavy smokers, 24,474 European ancestry never smokers	NA	7q35	TPK1, CNTNAP2	rs117238688-G	0.026	2E-7		1.26	[1.155-1.374]	Affymetrix [28509962] (imputed)	N
1697	chr7	145813853	145813854	rs2462603	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CNTNAP2	5,364 Icelandic ancestry individuals	NA	7q35		rs2462603-A	0.4982	5E-21		0.175149	[0.14-0.21] unit increase	Illumina [7506463] (imputed)	N
1697	chr7	145836200	145836201	rs34930172	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	7q35	Intergenic	rs34930172-G	0.8223	4E-14		0.0193	[0.014-0.024] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1697	chr7	145860570	145860571	rs34088420	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	7q35	Intergenic	rs34088420-A	0.8081	1E-12	(MTAG)	0.0149	[0.011-0.019] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1697	chr7	145860570	145860571	rs34088420	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	7q35	Intergenic	rs34088420-A	0.8081	3E-8		0.0159	[0.01-0.022] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1697	chr7	145879643	145879644	rs139413256	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Stem cell growth factor beta levels	3,682 Finnish ancestry individuals	NA	7q35	NR	rs139413256-G		7E-7		0.5377	[0.33-0.75] SD units increase	NR [10700000] (imputed)	N
1697	chr7	145882823	145882824	rs34438057	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	7q35	Intergenic	rs34438057-T	0.8169	1E-14	(MTAG)	0.0179	[0.013-0.022] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1698	chr7	145950028	145950029	rs114360492	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Family history of Alzheimer's disease	47,793 European ancestry cases, 328,320 European ancestry controls	NA	7q35	CNTNAP2	rs114360492-T	NR	2E-9		5.99	NR z-score increase	Affymetrix [10847151] (imputed)	N
1698	chr7	145950028	145950029	rs114360492	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	7q35	CNTNAP2	rs114360492-T	2.59E-4	2E-9		5.99	NR z-unit increase	Affymetrix, Illumina [up to 10847151] (imputed)	N
1698	chr7	145959242	145959243	rs802568	20889312	Wang KS	2010-10-01	Schizophr Res	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	7q35	CNTNAP2	rs802568-?	NR	2E-7		2.0307	[NR]	Affymetrix [722112]	N
1698	chr7	145962185	145962186	rs802571	26049409	Hirano A	2015-06-05	Psychiatr Genet	A genome-wide association study of late-onset Alzheimer's disease in a Japanese population.	Alzheimer's disease (late onset)	489 Japanese ancestry APOE-?4 noncarrier cases, 6,463 Japanese ancestry APOE-?4 noncarrier controls, 323 Japanese ancestry APOE-?4 carrier cases, 1,484 Japanese ancestry APOE-?4 carrier controls, 4 Japanese ancestry cases, 45 Japanese ancestry controls	528 Japanese ancestry APOE-?4 noncarrier cases, 5,824 Japanese ancestry APOE-?4 noncarrier controls, 480 Japanese ancestry APOE-?4 carrier cases, 1,364 Japanese ancestry APOE-?4 carrier controls, 3 Japanese ancestry cases, 24 Japanese ancestry controls	7q35	CNTNAP2	rs802571-T	0.916	1E-6	(noncarrier)	1.923077	[1.47-2.50]	Illumina [561143]	N
1698	chr7	145998640	145998641	rs189635654	32603185	Ibi D	2020-06-30	Circ Genom Precis Med	Genome-wide Association Study of the Postprandial Triglyceride Response Yields Common Genetic Variation in Hepatic Lipase (LIPC).	Postprandial triglyceride response	5,630 individuals	NA	7q35	CNTNAP2	rs189635654-T	0.01	2E-6		0.5	[0.3-0.7] unit increase	Illumina [NR] (imputed)	N
1699	chr7	146084572	146084573	rs73453125	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	LDL cholesterol levels x smoking (current vs non smokers) interaction (2df test)	4,973 African ancestry current smoker individuals, 2,375 Asian ancestry current smoker individuals, 13,799 European ancestry current smoker individuals, 755 Hispanic current smoker individuals, 18,384 African ancestry non smoker individuals, 10,742 Asian ancestry non smoker individuals, 68,719 European ancestry non smoker individuals, 5,894 Hispanic non smoker individuals	1,357 African ancestry current smoker individuals, 8,901 Asian ancestry current smoker individuals, 25,008 European ancestry current smoker individuals, 3,441 Hispanic current smoker individuals, 3,967 African ancestry non smoker individuals, 39,448 Asian ancestry non smoker individuals, 92,432 European ancestry non smoker individuals, 13,555 Hispanic non smoker individuals	7q35		rs73453125-A	0.07	2E-8	(African, trans-ethnic)	8.3	[5.56-11.04] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1699	chr7	146084572	146084573	rs73453125	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	LDL cholesterol levels x smoking (current vs non smokers) interaction (2df test)	4,973 African ancestry current smoker individuals, 2,375 Asian ancestry current smoker individuals, 13,799 European ancestry current smoker individuals, 755 Hispanic current smoker individuals, 18,384 African ancestry non smoker individuals, 10,742 Asian ancestry non smoker individuals, 68,719 European ancestry non smoker individuals, 5,894 Hispanic non smoker individuals	1,357 African ancestry current smoker individuals, 8,901 Asian ancestry current smoker individuals, 25,008 European ancestry current smoker individuals, 3,441 Hispanic current smoker individuals, 3,967 African ancestry non smoker individuals, 39,448 Asian ancestry non smoker individuals, 92,432 European ancestry non smoker individuals, 13,555 Hispanic non smoker individuals	7q35		rs73453125-?	NR	1E-9	(African, trans-ethnic)	11.12	[7.69-14.55] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1699	chr7	146084572	146084573	rs73453125	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	LDL cholesterol levels x smoking (current vs non smokers) interaction (1df test)	4,973 African ancestry current smoker individuals, 2,375 Asian ancestry current smoker individuals, 13,799 European ancestry current smoker individuals, 755 Hispanic current smoker individuals, 18,384 African ancestry non smoker individuals, 10,742 Asian ancestry non smoker individuals, 68,719 European ancestry non smoker individuals, 5,894 Hispanic non smoker individuals	1,357 African ancestry current smoker individuals, 8,901 Asian ancestry current smoker individuals, 25,008 European ancestry current smoker individuals, 3,441 Hispanic current smoker individuals, 3,967 African ancestry non smoker individuals, 39,448 Asian ancestry non smoker individuals, 92,432 European ancestry non smoker individuals, 13,555 Hispanic non smoker individuals	7q35		rs73453125-A	0.07	2E-7	(African, trans-ethnic)	7.5565	[4.72-10.39] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1699	chr7	146084572	146084573	rs73453125	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	LDL cholesterol levels x smoking (current vs non smokers) interaction (1df test)	4,973 African ancestry current smoker individuals, 2,375 Asian ancestry current smoker individuals, 13,799 European ancestry current smoker individuals, 755 Hispanic current smoker individuals, 18,384 African ancestry non smoker individuals, 10,742 Asian ancestry non smoker individuals, 68,719 European ancestry non smoker individuals, 5,894 Hispanic non smoker individuals	1,357 African ancestry current smoker individuals, 8,901 Asian ancestry current smoker individuals, 25,008 European ancestry current smoker individuals, 3,441 Hispanic current smoker individuals, 3,967 African ancestry non smoker individuals, 39,448 Asian ancestry non smoker individuals, 92,432 European ancestry non smoker individuals, 13,555 Hispanic non smoker individuals	7q35		rs73453125-?	NR	2E-8	(African, trans-ethnic)	10.2721	[6.67-13.88] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1699	chr7	146084572	146084573	rs73453125	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	LDL cholesterol levels in current smokers	4,973 African ancestry individuals, 2,375 Asian ancestry individuals, 13,799 European ancestry individuals, 755 Hispanic individuals	NA	7q35		rs73453125-?	NR	3E-8	(African, trans-ethnic)	8.5955	[5.54-11.65] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1699	chr7	146104453	146104454	rs802196	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter alcoholic beverage consumption	336,448 European ancestry individuals	39,924 European ancestry individuals	7q35	CNTNAP2	rs802196-T	0.3257	3E-6		0.0051	[0.0029-0.0073] unit increase	Affymetrix [~ 7740000] (imputed)	N
1699	chr7	146123499	146123500	rs55795858	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	7q35	NR	rs55795858-C	0.329414	2E-8		0.0179944	[0.012-0.024] unit increase	Affymetrix [16577424] (imputed)	N
1699	chr7	146135937	146135938	rs1358075	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	7q35	CNTNAP2	rs1358075-G	0.012	9E-6	(TBF-b1 )	0.03	[NR] pg/mL increase	Illumina [899892]	N
1700	chr7	146235315	146235316	rs76780761	32766472	Park SL	2020-06-25	Hepatol Commun	Genome-Wide Association Study of Liver Fat: The Multiethnic Cohort Adiposity Phenotype Study.	Percent liver fat	269 African American individuals, 424 Japanese American individuals, 345 Latino individuals, 270 Native Hawaiian individuals, 382 European ancestry individuals	NA	7q35	NR	rs76780761-?	NR	8E-7		0.1737165	[0.1-0.24] unit decrease	Illumina [9789995] (imputed)	N
1701	chr7	146348026	146348027	rs540694424	30104761	Zhou W	2018-08-13	Nat Genet	Efficiently controlling for case-control imbalance and sample relatedness in large-scale genetic association studies.	Glaucoma	4,462 European ancestry cases, 397,761 European ancestry controls	NA	7q35	CNTNAP2	rs540694424-C	3.7E-5	1E-8				Affymetrix [28000000] (imputed)	N
1701	chr7	146374327	146374328	rs1389783	34074324	Wan JY	2021-06-01	Diabetol Metab Syndr	Genome-wide association analysis of metabolic syndrome quantitative traits in the GENNID multiethnic family study.	Waist circumference	281 African American individuals from 73 families, 516 European ancestry individuals from 75 families, 125 Japanese American individuals from 15 families, 598 Mexican American individuals from 96 families	NA	7q35	CNTNAP2	rs1389783-G	0.46	6E-7	(African American)	0.07	[0.05-0.09] unit decrease	Illumina [up to 13042663] (imputed)	N
1701	chr7	146391519	146391520	rs10952655	35232999	Garcia-Etxebarria K	2022-03-01	Sci Rep	Local genetic variation of inflammatory bowel disease in Basque population and its effect in risk prediction.	Crohn's disease	284 European ancestry cases, 935 European ancestry controls	NA	7q35		rs10952655-A	0.782	2E-6		1.8		Illumina [5411261] (imputed)	N
1702	chr7	146418259	146418260	rs190748049	30670697	Kilpelainen TO	2019-01-22	Nat Commun	Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity.	LDL cholesterol x physical activity interaction (2df test)	7,260 African American inactive individuals, 12,761 African American active individuals, 2,740 Asian ancestry inactive individuals, 3,615 Asian ancestry active individuals, 22,378 European ancestry inactive individuals, 55,310 European ancestry active individuals, 2,163 Hispanic or Latin American inactive individuals, 3,461 Hispanic or Latin American active individuals	571 African American inactive individuals, 1,521 African American active individuals, 1,217 South African Black ancestry inactive individuals, 389 South African Black ancestry active individuals, 2,495 East Asian ancestry inactive individuals, 1,947 East Asian ancestry active individuals,  724 South Asian ancestry inactive individuals, 1,425 South Asian ancestry active individuals,  33,796 European ancestry inactive individuals, 50,812 European ancestry active individuals, 2,578 Hispanic inactive individuals, 8,661 Hispanic active individuals	7q35	CNTNAP2	rs190748049-T	0.0453	4E-8				Affymetrix, Illumina [at least 2500000] (imputed)	N
1702	chr7	146418259	146418260	rs190748049	30670697	Kilpelainen TO	2019-01-22	Nat Commun	Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity.	LDL cholesterol x physical activity interaction (1df test)	7,260 African American inactive individuals, 12,761 African American active individuals, 2,740 Asian ancestry inactive individuals, 3,615 Asian ancestry active individuals, 22,378 European ancestry inactive individuals, 55,310 European ancestry active individuals, 2,163 Hispanic or Latin American inactive individuals, 3,461 Hispanic or Latin American active individuals	571 African American inactive individuals, 1,521 African American active individuals, 1,217 South African Black ancestry inactive individuals, 389 South African Black ancestry active individuals, 2,495 East Asian ancestry inactive individuals, 1,947 East Asian ancestry active individuals,  724 South Asian ancestry inactive individuals, 1,425 South Asian ancestry active individuals,  33,796 European ancestry inactive individuals, 50,812 European ancestry active individuals, 2,578 Hispanic inactive individuals, 8,661 Hispanic active individuals	7q35	CNTNAP2	rs190748049-C	0.95	2E-6		7.2	[4.26-10.14] mg/dL decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1702	chr7	146427449	146427449	rs150707498	33742053	Wells HRR	2021-03-19	Sci Rep	Genome-wide association study suggests that variation at the RCOR1 locus is associated with tinnitus in UK Biobank.	Tinnitus (severest)	87,314 British ancestry individuals	NA	7q35	NR	rs150707498-A	NR	1E-6		0.0189329	[0.011-0.027] unit increase	Affymetrix [9740198] (imputed)	N
1703	chr7	146651408	146651409	rs1404154	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FEV1/FVC)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		7q35	CNTNAP2	rs1404154-T	0.99	3E-8	(EA)	0.03	[0.018-0.042] unit decrease	Affymetrix, Illumina [10900000] (imputed)	N
1704	chr7	146691343	146691344	rs117104597	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q35	CNTNAP2	rs117104597-G	0.9795	3E-8	(-156 ms)	0.10647	[0.068-0.145] unit increase	Affymetrix [10000000] (imputed)	N
1704	chr7	146691343	146691344	rs117104597	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q35	CNTNAP2	rs117104597-G	0.9795	3E-8	(-154 ms)	0.109098	[0.071-0.148] unit increase	Affymetrix [10000000] (imputed)	N
1704	chr7	146751305	146751306	rs6947515	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin I concentration	1,606 African American individuals	NA	7q35		rs6947515-?	NR	4E-6		0.16	[0.091-0.229] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1704	chr7	146761306	146761307	rs28516534	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	7q35	NR	rs28516534-?	NR	6E-9				Illumina [7760689] (imputed)	N
1705	chr7	146814250	146814251	rs7794614	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Aspartate aminotransferase levels in excessive alcohol consumption	951 individuals	NA	7q35	NR	rs7794614-?	NR	5E-6		0.0103	[0.0058-0.0148] unit decrease	Illumina [~ 7800000] (imputed)	N
1705	chr7	146838589	146838590	rs184791564	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Chronic sinus infection	5,291 European ancestry cases, 79,622 European ancestry controls	NA	7q35	NR	rs184791564-?	NR	8E-6		1.9417	[1.2-2.68] unit decrease	Illumina [at least 560000] (imputed)	N
1705	chr7	146854447	146854448	rs138986592	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,963 Sub-Saharan African ancestry females	NA	7q35		rs138986592-G	0.9784	4E-6		0.0408956	[0.023-0.058] unit decrease	Illumina [13900000] (imputed)	N
1705	chr7	146876501	146876502	rs7457112	32308125	Wolking S	2020-04-20	Pharmacogenomics	Pharmacoresponse in genetic generalized epilepsy: a genome-wide association study.	Response to antiepileptic drugs in genetic generalized epilepsy	608 European ancestry responders, 278 European ancestry non-responders	NA	7q35	CNTNAP2	rs7457112-?	NR	9E-6				Affymetrix, Illumina [at least 3287443] (imputed)	N
1705	chr7	146887867	146887868	rs17170356	24939585	Fransen E	2014-06-18	Eur J Hum Genet	Genome-wide association analysis demonstrates the highly polygenic character of age-related hearing impairment.	Age-related hearing impairment	1,489 European ancestry individuals	NA	7q35	CNTNAP2	rs17170356-?		4E-6	(PC3)	0.1547	[NR] unit increase	Illumina [4167292] (imputed)	N
1705	chr7	146897402	146897403	rs10273775	22159054	Logue MW	2011-12-01	Arch Neurol	A comprehensive genetic association study of Alzheimer disease in African Americans.	Alzheimer's disease	513 African American cases, 496 African American controls	NA	7q35	CNTNAP2	rs10273775-G	0.42	9E-6		1.52	[1.27-1.84]	Illumina [2505093] (imputed)	N
1706	chr7	146987617	146987618	rs193032333	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	7q35	CNTNAP2	rs193032333-T	NR	7E-6	(men)	0.0900847	[0.051-0.129] unit decrease	Illumina [13520550] (imputed)	N
1706	chr7	147057467	147057468	rs17413110	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	7q35	C7orf33	rs17413110-?	NR	1E-6	(cotinine)	0.18236256	[0.11-0.26] unit increase	Affymetrix [at least 2500000] (imputed)	N
1707	chr7	147145378	147145379	rs114465797	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	7q35	NR	rs114465797-?	NR	5E-7		5.5775	[-0.30701-11.46201] unit increase	Illumina [at least 560000] (imputed)	N
1708	chr7	147226890	147226891	rs6464816	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue/subcutaneous adipose tissue ratio	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	7q35	CNTNAP2	rs6464816-A	0.15	9E-6	(men)			Affymetrix, Illumina [2500000] (imputed)	N
1708	chr7	147258630	147258631	rs6960319	25760438	Anderson D	2015-03-11	PLoS One	First genome-wide association study in an Australian aboriginal population provides insights into genetic risk factors for body mass index and type 2 diabetes.	Body mass index	361 Martu Australian Aboriginal ancestry individuals	NA	7q35	CNTNAP2	rs6960319-?	NR	7E-6		0.36	[0.18-0.54] unit decrease	Illumina [1075436] (imputed)	N
1709	chr7	147356107	147356108	rs192092592	33852427	Wittekind DA	2021-04-01	Eur J Endocrinol	Genome-wide association and transcriptome analysis suggests total serum ghrelin to be linked with GFRAL.	ghrelin levels	1,501 individuals	NA	7q35	CNTNAP2	rs192092592-G	NR	9E-9		0.439	[0.29-0.59] unit decrease	Affymetrix [9868623] (imputed)	N
1709	chr7	147406261	147406262	rs731565	26305897	Iyengar SK	2015-08-25	PLoS Genet	Genome-Wide Association and Trans-ethnic Meta-Analysis for Advanced Diabetic Kidney Disease: Family Investigation of Nephropathy and Diabetes (FIND).	Diabetic kidney disease	1,564 African American cases, 369  African American diabetic controls, 1,288 African American non-diabetic controls, 538 American Indian ancestry cases, 319 American Indian ancestry diabetic controls, 342 European ancestry cases, 404 European ancestry diabetic controls, 779 Mexican ancestry cases, 594 Mexican ancestry diabetic controls	950 African American cases, 50 African American diabetic controls, 1,887 African American non-diabetic controls, 471 American Indian ancestry cases, 340 American Indian ancestry diabetic controls, 486 American Indian ancestry non-diabetic controls, 582 European ancestry ancestry cases, 205 European ancestry diabetic controls, 2,568 European ancestry non-diabetic controls	7q35	CNTNAP2	rs731565-T	0.2	4E-6	(Mexican, additive )	1.58	[1.30-1.92]	Affymetrix [NR]	N
1709	chr7	147428504	147428505	rs76984521	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Choroid plexus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	7q35	CNTNAP2	rs76984521-?		7E-6				Illumina [4322238] (imputed)	N
1710	chr7	147520603	147520604	rs10488353	28394258	Wild PS	2017-04-10	J Clin Invest	Large-scale genome-wide analysis identifies genetic variants associated with cardiac structure and function.	Left ventricle wall thickness	30,201 European ancestry individuals	NA	7q35	NR	rs10488353-C	0.0146	8E-6		0.206	[0.12-0.3] unit increase	Affymetrix, Illumina [at least 283291] (imputed)	N
1710	chr7	147577536	147577537	rs2708240	23459443	Avery CL	2013-03-05	Pharmacogenomics J	Drug-gene interactions and the search for missing heritability: a cross-sectional pharmacogenomics study of the QT interval.	QT interval (drug interaction)	33,781 European ancestry individuals	NA	7q35	CNTNAP2	rs2708240-A	0.51	4E-6	(Tri-Tetra/cyclic antidepressants)			Affymetrix, Illumina [~ 2500000] (imputed)	N
1711	chr7	147587818	147587819	rs77935737	29206233	Shendre A	2017-12-04	PLoS One	Genome-wide admixture and association study of subclinical atherosclerosis in the Women's Interagency HIV Study (WIHS).	Common carotid intima-media thickness in HIV negative individuals	288 Black non-Hispanic HIV-negative women	NA	7q35	CNTNAP2	rs77935737-T	NR	4E-6		0.03454	[NR] unit increase	Illumina [1124301]	N
1711	chr7	147592378	147592379	rs2710103	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 11, projection of the nose)	2,187 European ancestry individuals	NA	7q35	NR	rs2710103-G	0.295	2E-6		0.1606	[0.095-0.226] unit decrease	Illumina [10677593] (imputed)	N
1711	chr7	147603624	147603625	rs2710119	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota relative abundance (bacterial taxa)	up to 858 Metropolitan French ancestry individuals	NA	7q35	NR	rs2710119-?	NR	8E-9	(Actinobacteriia)	0.223168	[0.15-0.3] unit increase	Illumina [5293637] (imputed)	N
1711	chr7	147615639	147615640	rs2538958	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	7q35	NR	rs2538958-C	0.436017399375279	8E-6	(IGP56)	0.1388	[0.078-0.2] unit increase	Illumina [~ 2500000] (imputed)	N
1711	chr7	147616792	147616793	rs146883444	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	7q35	NR	rs146883444-?	NR	6E-6	(AA)	1.4347	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1711	chr7	147634890	147634891	rs117834366	31473137	Moreno-Grau S	2019-08-13	Alzheimers Dement	Genome-wide association analysis of dementia and its clinical endophenotypes reveal novel loci associated with Alzheimer's disease and three causality networks: The GR@ACE project.	Alzheimer's disease and/or vascular dementia (clinical subgroup VaD++)	373 Spanish ancestry cases, 3,289 Spanish ancestry controls	NA	7q35	CNTNAP2	rs117834366-A	0.011	2E-8		6.03	[3.22-11.2]	Affymetrix [~ 7700000] (imputed)	N
1711	chr7	147658538	147658539	rs1922879	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	7q35	NR	rs1922879-G	0.6293	2E-8		0.023	[0.015-0.031] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1711	chr7	147672371	147672372	rs4726900	30704525	Guyatt AL	2019-01-31	Hum Genomics	A genome-wide association study of mitochondrial DNA copy number in two population-based cohorts.	Mitochondrial DNA copy number	3,647 European ancestry children	NA	7q35	MIR548T	rs4726900-G	NR	2E-7		0.124	[0.077-0.171] unit increase	Illumina [7410776] (imputed)	N
1711	chr7	147675431	147675432	rs2888540	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	7q35	NR	rs2888540-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
1711	chr7	147676879	147676880	rs6944674	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	7q35		rs6944674-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1711	chr7	147688886	147688887	rs2189883	32766473	Yoshida K	2020-05-19	Hepatol Commun	Genome-Wide Association Study of Lean Nonalcoholic Fatty Liver Disease Suggests Human Leukocyte Antigen as a Novel Candidate Locus.	Lean nonalcoholic fatty liver disease	275 Japanese ancestry cases, 1,411 Japanese ancestry controls	NA	7q35	NR	rs2189883-?	NR	4E-7		1.77	[1.42-2.22]	Affymetrix [NR]	N
1711	chr7	147694690	147694691	rs10264127	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	7q35		rs10264127-G	NR	2E-8		0.0111	[0.0072-0.015] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1711	chr7	147702691	147702692	rs2214681	17903296	Kiel DP	2007-09-19	BMC Med Genet	Genome-wide association with bone mass and geometry in the Framingham Heart Study.	Bone mineral density	Up to 1,141 individuals from 241 families	NA	7q35	CNTNAP2	rs2214681-?	NR	3E-6	(BUA)			Affymetrix [70897]	N
1712	chr7	147731414	147731415	rs140222672	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	7q35	NR	rs140222672-?	NR	3E-8				Illumina [7760689] (imputed)	N
1712	chr7	147804092	147804093	rs60465337	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	7q35	NR	rs60465337-C	NR	9E-7	(GEE model)	1.028	[0.62-1.44] unit increase	NR [NR] (imputed)	N
1712	chr7	147806980	147806981	rs12532051	33608531	Wu Y	2021-02-19	Nat Commun	GWAS of peptic ulcer disease implicates Helicobacter pylori infection, other gastrointestinal disorders and depression.	Gastroesophageal reflux disease, peptic ulcer disease and/or corresponding medications and treatment	90,175 European ancestry cases, 366,152 European ancestry controls	NA	7q35	CNTNAP2	rs12532051-C	0.96	1E-9		1.08		NR [8546065] (imputed)	N
1712	chr7	147821032	147821033	rs12533593	30263053	Deng X	2018-09-17	BMC Proc	Genome-wide association study for multiple phenotype analysis.	HDL cholesterol and triglyceride levels (pleiotropy)	821 individuals	NA	7q35	NA	rs12533593-?	NR	8E-6	(SSU)			Affymetrix [587358]	N
1712	chr7	147821032	147821033	rs12533593	30263053	Deng X	2018-09-17	BMC Proc	Genome-wide association study for multiple phenotype analysis.	HDL cholesterol	821 individuals	NA	7q35	NA	rs12533593-?		2E-6				Affymetrix [587358]	N
1713	chr7	147878369	147878370	rs59800292	28030426	Mahmoudpour SH	2017-03-27	Pharmacogenet Genomics	Meta-analysis of genome-wide association studies on the intolerance of angiotensin-converting enzyme inhibitors.	Angiotensin-converting enzyme inhibitor intolerance	972 European ancestry intolerant individuals, 4,189 European ancestry tolerant individuals	NA	7q35	CNTNAP2	rs59800292-?	0.5621940000000001	3E-6		1.2875596	[1.16-1.43]	Affymetrix, Illumina [NR] (imputed)	N
1713	chr7	147901015	147901016	rs4549702	23192594	Velez Edwards DR	2012-11-29	Hum Genet	Gene-environment interactions and obesity traits among postmenopausal African-American and Hispanic women in the Women's Health Initiative SHARe Study.	Body mass index (recreational physical activity interaction)	8,203 African American females, 3,484 Hispanic females	NA	7q36.1	CNTNAP	rs4549702-G	0.34	1E-6	(Hispanic)	0.01	[0.01-0.02] unit decrease	Affymetrix [706791]	N
1713	chr7	147901015	147901016	rs4549702	23192594	Velez Edwards DR	2012-11-29	Hum Genet	Gene-environment interactions and obesity traits among postmenopausal African-American and Hispanic women in the Women's Health Initiative SHARe Study.	Body mass index (dietary energy interaction)	8,203 African American females, 3,484 Hispanic females	NA	7q36.1	CNTNAP2	rs4549702-G	0.4	1E-6	(AA)	0.02	[0.01-0.03] unit increase	Affymetrix [706791]	N
1713	chr7	147920323	147920324	rs2373347	34309201	Yu Y	2021-07-26	Mol Oncol	A comprehensive analysis of SNPs and CNVs identifies novel markers associated with disease outcomes in colorectal cancer.	Disease free survival in colorectal cancer	505 European ancestry individuals	NA	7q36.1		rs2373347-?	NR	5E-6				Illumina [4711309] (imputed)	N
1713	chr7	147925491	147925492	rs10263021	31615970	Rodas G	2019-10-14	Int J Sports Physiol Perform	Genomic Prediction of Tendinopathy Risk in Elite Team Sports.	Tendinopathy	181 European ancestry cases, 12 African American cases, 5 Brazilian cases, 1 Asian ancestry cases, 147 European ancestry controls, 9 African American controls, 7 Brazilian controls, 2 Asian ancestry controls	NA	7q36.1	CNTP2	rs10263021-?	NR	5E-6		2.3809524	[1.1-5]	Illumina [1419369] (imputed)	N
1715	chr7	148112233	148112234	rs2530313	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	7q36.1	NR	rs2530313-?	NR	5E-7				Affymetrix [NR]	N
1715	chr7	148117445	148117446	rs10251347	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	7q36.1	C7orf33	rs10251347-?	NR	5E-6	(glycerol-3-phosphate)	0.41711155	[0.24-0.6] unit increase	Affymetrix [at least 2500000] (imputed)	N
1715	chr7	148141081	148141082	rs1989248	27647854	Sandholm N	2016-09-19	J Am Soc Nephrol	The Genetic Landscape of Renal Complications in Type 1 Diabetes.	Chronic kidney disease (severe chronic kidney disease vs normal kidney function) in type 1 diabetes	907 European ancestry cases, 210 cases, 1,661 European ancestry controls, 357 controls	1,266 cases, 2,655 controls	7q36.1	CNTNAP2	rs1989248-C	0.29	6E-7		1.26	[1.15-1.38]	Illumina [NR] (imputed)	N
1715	chr7	148183593	148183594	rs6464906	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7q36.1	NR	rs6464906-C	0.07143	2E-8	(PSMC2)	0.1051	NR unit increase	Illumina [1671387] (imputed)	N
1715	chr7	148211885	148211886	rs2717804	33987465	Alfradique-Dunham I	2021-01-28	Neurol Genet	Genome-Wide Association Study Meta-Analysis for Parkinson Disease Motor Subtypes.	Parkinson's disease motor subtype (tremor to postural instability/gait difficulty score ratio)	3,212 European ancestry individuals	NA	7q36.1	C7orf33	rs2717804-A	0.36	3E-6		0.12	[0.061-0.179] unit decrease	Illumina [14638245] (imputed)	N
1715	chr7	148220447	148220448	rs2538470	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	7q36.1	intergenic	rs2538470-?	NR	2E-10	(subset analysis)			Illumina [130052]	N
1715	chr7	148220447	148220448	rs2538470	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	7q36.1	CNTNAP2	rs2538470-A	0.3622	3E-7	(EA)	1.0682071	[1.04-1.09]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1715	chr7	148220447	148220448	rs2538470	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	7q36.1	CNTNAP2	rs2538470-A	0.3622	3E-11	(EA)	1.0698943	[1.05-1.09]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1715	chr7	148220447	148220448	rs2538470	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	7q36.1	CNTNAP2	rs2538470-A	0.3622	1E-9	(EA)	1.0778457	[1.05-1.1]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1716	chr7	148246392	148246393	rs10253719	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota alpha diversity (Shannon index)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	7q36.1		rs10253719-A	NR	8E-6		4.472086	z score increase	Affymetrix, Illumina [NR] (imputed)	N
1716	chr7	148258047	148258048	rs7807268	17554300	Wellcome Trust Case Control Consortium	2007-06-07	Nature	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Crohn's disease	1,748 European ancestry cases, 2,938 European ancestry controls	(see Parkes 2007)	7q36.1	NR	rs7807268-G	0.46	4E-6		1.38	[1.20-1.60]	Affymetrix [469557]	N
1716	chr7	148269774	148269775	rs141745233	30196971	Bray MJ	2018-09-01	Fertil Steril	Transethnic and race-stratified genome-wide association study of fibroid characteristics in African American and European American women.	Uterine fibroid size (maximum volume)	1,048 African American or European ancestry female individuals	NA	7q36.1	CNTNAP2, CUL1	rs141745233-T	0.09	4E-7	(EA)	0.46	[0.29-0.64] unit decrease	Affymetrix [up to 9597202] (imputed)	N
1716	chr7	148275665	148275666	rs11773301	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	7q36.1	CUL1	rs11773301-?	NR	5E-6	(asparagine)	0.2077397	[0.12-0.3] unit increase	Affymetrix [at least 2500000] (imputed)	N
1716	chr7	148289103	148289104	rs58041956	34231218	McDonough CW	2021-07-07	Clin Pharmacol Ther	Adverse Cardiovascular Outcomes and Antihypertensive treatment: A Genome-Wide Interaction Meta-Analysis in the International Consortium for Antihypertensive Pharmacogenomics Studies (ICAPS).	Adverse cardiovascular outcome x ACE inhibitors/ARBs interaction in hypertension	2,559 European ancestry individuals	NA	7q36.1		rs58041956-A	0.917	8E-7				Affymetrix, Illumina [6400000] (imputed)	N
1716	chr7	148305887	148305888	rs117600668	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		C7orf33	rs117600668-?	NR	4E-10		4.49296	[NR] unit increase	Affymetrix [NR] (imputed)	N
1716	chr7	148361276	148361277	rs7812293	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	7q36.1		rs7812293-C	0.45922	1E-9		0.013612404	[0.0092-0.018] unit increase	Affymetrix [93095623] (imputed)	N
1716	chr7	148368015	148368016	rs6961761	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	7q36.1		rs6961761-?	NR	4E-12				NR [~ 8900000] (imputed)	N
1717	chr7	148386113	148386114	rs6464921	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7q36.1		rs6464921-?	NR	2E-16				NR [~ 8900000] (imputed)	N
1717	chr7	148422338	148422339	rs73745348	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mononucleosis	17,457 European ancestry cases, 68,446 European ancestry controls	NA	7q36.1	NR	rs73745348-?	NR	8E-6		1.0415	[0.53-1.55] unit decrease	Illumina [at least 560000] (imputed)	N
1717	chr7	148429805	148429806	rs243513	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	7q36.1	NR	rs243513-G	0.71	5E-8		0.0232	[0.015-0.032] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1717	chr7	148435338	148435339	rs243505	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	7q36.1	CUL1, EZH2	rs243505-A	0.624	3E-10		1.08	1.06-1.11	Illumina [9725440] (imputed)	N
1717	chr7	148435338	148435339	rs243505	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	7q36.1	CUL1, EZH2	rs243505-?		6E-7				Illumina [9560910] (imputed)	N
1717	chr7	148446376	148446377	rs4541821	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	7q36.1		rs4541821-A	NR	3E-13		0.0182	[0.013-0.023] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
1717	chr7	148446376	148446377	rs4541821	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	7q36.1		rs4541821-T	0.788	6E-11		0.09	[0.06-0.12] % increase	Affymetrix [NR] (imputed)	N
1717	chr7	148446376	148446377	rs4541821	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	7q36.1	CUL1	rs4541821-A	0.213129	1E-15		0.02170393	[0.016-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1717	chr7	148446376	148446377	rs4541821	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	7q36.1	NR	rs4541821-A	0.215492	3E-19		0.019968	[0.016-0.024] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1717	chr7	148446376	148446377	rs4541821	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	7q36.1	NR	rs4541821-A	0.21449	8E-16		0.019037	[0.014-0.024] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
1717	chr7	148447749	148447750	rs10255402	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q36.1	NR	rs10255402-T	0.211872	2E-22				Affymetrix, Illumina [24246363] (imputed)	N
1717	chr7	148447749	148447750	rs10255402	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q36.1	NR	rs10255402-T	0.210148	2E-15				Affymetrix, Illumina [20825802] (imputed)	N
1717	chr7	148448923	148448924	rs10278305	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	7q36.1		rs10278305-C	NR	4E-17		0.021	[0.016-0.026] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
1717	chr7	148448923	148448924	rs10278305	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	7q36.1	CUL1	rs10278305-C	0.21304	3E-20		0.0217237	[0.017-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1718	chr7	148554334	148554335	rs10952780	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	7q36.1		rs10952780-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1718	chr7	148564137	148564138	rs148190310	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	7q36.1		rs148190310-A	NR	1E-8		0.0366	[0.024-0.049] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
1718	chr7	148564366	148564367	rs113161209	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	7q36.1	EZH2	rs113161209-A	0.077	4E-8		1.0451914		Affymetrix [11880941] (imputed)	N
1718	chr7	148566690	148566691	rs183710197	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial squamous cell lung carcinoma	367 European ancestry cases, 31,563 European ancestry controls	NA	7q36.1	EZH2	rs183710197-C	0.003	2E-6		11.06	[4.12-29.72]	Illumina [7959153] (imputed)	N
1718	chr7	148580808	148580809	rs80052686	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	7q36.1	EZH2	rs80052686-C	0.14252	1E-9		0.019505067	[0.013-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1718	chr7	148580808	148580809	rs80052686	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	7q36.1	EZH2	rs80052686-C	0.142406	4E-9		0.019005131	[0.013-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1718	chr7	148584493	148584494	rs149882987	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	7q36.1	RN7SL569P	rs149882987-G	NR	4E-9		0.0563119	[0.038-0.075] unit increase	Affymetrix [323123] (imputed)	N
1718	chr7	148600309	148600310	rs7790642	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	7q36.1	Intergenic	rs7790642-?	NR	1E-6		1.383	[NR]	Affymetrix [492217] (imputed)	N
1718	chr7	148623665	148623666	rs193123434	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial lung adenocarcinoma	775 European ancestry cases, 31,563 European ancestry controls	NA	7q36.1	NR	rs193123434-A	0.006	8E-6		5.04	[2.48-10.25]	Illumina [8672852] (imputed)	N
1718	chr7	148629758	148629759	rs822531	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	7q36.1		rs822531-T	NR	2E-70		0.0287	[0.026-0.032] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1718	chr7	148629758	148629759	rs822531	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	7q36.1	RNY5	rs822531-C	NR	1E-10		0.0229175	[0.016-0.03] unit decrease	Affymetrix [321114] (imputed)	N
1718	chr7	148629758	148629759	rs822531	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	7q36.1	RNY5	rs822531-C	NR	2E-17		0.0297851	[0.023-0.037] unit decrease	Affymetrix [321016] (imputed)	N
1718	chr7	148629758	148629759	rs822531	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in non-smokers	77,113 European ancestry women, 47,319 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	7q36.1	EZH2	rs822531-T	0.7837	1E-6		0.0253	[0.015-0.035] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1718	chr7	148629758	148629759	rs822531	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	7q36.1	EZH2	rs822531-T	0.7837	2E-6				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1718	chr7	148629758	148629759	rs822531	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	7q36.1	EZH2	rs822531-T	0.7837	5E-7		0.0241	[0.015-0.034] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1718	chr7	148629758	148629759	rs822531	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	7q36.1	EZH2	rs822531-T	0.7818	4E-8	(EA)	0.0244	[0.016-0.033] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1718	chr7	148629758	148629759	rs822531	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	7q36.1	EZH2	rs822531-T	0.7818	2E-6	(EA, men)	0.0297	[0.018-0.042] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1718	chr7	148629758	148629759	rs822531	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	7q36.1	EZH2	rs822531-T	0.776	2E-18		0.036	[0.028-0.044] unit increase	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
1718	chr7	148631554	148631555	rs822530	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	7q36.1		rs822530-T	0.782404	4E-13		0.0189687	[0.014-0.024] unit increase	Illumina [13479295] (imputed)	N
1718	chr7	148631554	148631555	rs822530	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	7q36.1	RNY5	rs822530-A	NR	7E-9		0.0221145	[0.015-0.03] unit decrease	Affymetrix [323123] (imputed)	N
1718	chr7	148631554	148631555	rs822530	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	7q36.1	intergenic	rs822530-A	0.2047	2E-27		0.0255	[0.021-0.03] unit decrease	Affymetrix [18391927] (imputed)	N
1718	chr7	148631554	148631555	rs822530	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	7q36.1	EZH2, GHET1	rs822530-?	NR	3E-15		0.028709164	[0.022-0.036] unit increase	Illumina [27896057] (imputed)	N
1718	chr7	148631554	148631555	rs822530	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7q36.1		rs822530-?	NR	1E-117				NR [~ 8900000] (imputed)	N
1718	chr7	148634850	148634851	rs4725792	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	7q36.1	NR	rs4725792-T	0.364362	5E-10		0.0199825	[0.014-0.026] unit decrease	NR [19129689] (imputed)	N
1719	chr7	148636420	148636421	rs80085026	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	7q36.1	RNY5	rs80085026-G	NR	1E-17		0.0308105	[0.024-0.038] unit increase	Affymetrix [321016] (imputed)	N
1719	chr7	148636420	148636421	rs80085026	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	7q36.1	RNY5	rs80085026-G	NR	6E-10		0.0242032	[0.017-0.032] unit increase	Affymetrix [323123] (imputed)	N
1719	chr7	148636420	148636421	rs80085026	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	7q36.1	NR	rs80085026-?	NR	1E-15				Affymetrix [~ 8270000] (imputed)	N
1719	chr7	148636420	148636421	rs80085026	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	7q36.1	RNY5	rs80085026-C	0.8066	7E-12		0.0556	[0.04-0.071] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1719	chr7	148641858	148641859	rs147963055	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	7q36.1	RNY5	rs147963055-C	NR	1E-8		0.0216442	[0.014-0.029] unit increase	Affymetrix [321114] (imputed)	N
1719	chr7	148643502	148643503	rs9648867	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	7q36.1	RNY5	rs9648867-A	NR	2E-8		0.0188712	[0.012-0.025] unit decrease	Affymetrix [321114] (imputed)	N
1719	chr7	148645303	148645304	rs77422089	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	7q36.1		rs77422089-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1719	chr7	148645421	148645422	rs2086086	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	7q36.1	RNY5	rs2086086-A	NR	3E-10		0.0194205	[0.013-0.025] unit decrease	Affymetrix [321016] (imputed)	N
1719	chr7	148647092	148647093	rs822547	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	7q36.1	RNY5	rs822547-A	NR	1E-8		0.0182664	[0.012-0.025] unit increase	Affymetrix [321114] (imputed)	N
1719	chr7	148647092	148647093	rs822547	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	7q36.1	RNY5	rs822547-A	NR	6E-16		0.0257192	[0.019-0.032] unit increase	Affymetrix [321016] (imputed)	N
1719	chr7	148647760	148647760	rs112416074	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	7q36.1	intergenic	rs112416074-AG	0.165693	6E-13		0.01878	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1719	chr7	148647760	148647760	rs112416074	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	7q36.1	intergenic	rs112416074-AG	0.165693	2E-15	(females)	0.02909	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1719	chr7	148647760	148647760	rs112416074	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	7q36.1	intergenic	rs112416074-AG	0.165693	1E-10	(females)	0.02332	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1719	chr7	148647760	148647760	rs112416074	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	7q36.1	intergenic	rs112416074-AG	0.165693	1E-10		0.01646	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1719	chr7	148648834	148648835	rs822548	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	7q36.1	RNY5	rs822548-T	0.8039	2E-6		0.0391	[0.023-0.055] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1719	chr7	148650374	148650375	rs822551	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	7q36.1	RNY4	rs822551-A	NR	1E-14		0.0307126	[0.023-0.039] unit decrease	Affymetrix [321114] (imputed)	N
1719	chr7	148650374	148650375	rs822551	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	7q36.1	NR	rs822551-?	NR	2E-27				Affymetrix [~ 8270000] (imputed)	N
1719	chr7	148650633	148650634	rs822552	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	7q36.1	PDIA4	rs822552-C	0.74	3E-8		0.025	[NR] unit decrease	Affymetrix, Illumina [2834208] (imputed)	N
1719	chr7	148659153	148659154	rs12532736	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	7q36.1	RNY4	rs12532736-A	NR	3E-8		0.0158967	[0.01-0.022] unit decrease	Affymetrix [321016] (imputed)	N
1719	chr7	148671276	148671277	rs1676905	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder	29,475 European ancestry cases, 63,482 European ancestry controls	NA	7q36.1	NR	rs1676905-G	0.92639	3E-6		1.073	[1.04-1.1]	Affymetrix [7791636] (imputed)	N
1719	chr7	148673093	148673094	rs73160311	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	7q36.1	NR	rs73160311-?	NR	6E-6		0.007707	[0.0044-0.011] unit increase	Affymetrix [805426] (imputed)	N
1719	chr7	148675234	148675235	rs144776264	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	7q36.1		rs144776264-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1719	chr7	148717466	148717467	rs6464929	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric bone mineral content (hip)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	7q36.1	NR	rs6464929-A	0.22	8E-6		0.179616	[0.1-0.26] unit increase	Illumina [~ 6600000] (imputed)	N
1719	chr7	148719655	148719656	rs1551927	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	7q36.1	PDIA4	rs1551927-T	NR	4E-8		0.0220727	[0.014-0.03] unit decrease	Affymetrix [321114] (imputed)	N
1719	chr7	148734041	148734042	rs4483075	33232274	Mohammadnejad A	2020-11-24	Aging (Albany NY)	Generalized correlation coefficient for genome-wide association analysis of cognitive ability in twins.	Cognitive function (generalized correlation coefficient)	900 Danish ancestry dizygotic twins, 272 Danish ancestry monozygotic twins	NA	7q36.1	NR	rs4483075-?	NR	4E-7			[NR]	Illumina [5779266] (imputed)	N
1719	chr7	148740492	148740493	rs4727012	26621817	Cheng TH	2015-12-01	Sci Rep	Meta-analysis of genome-wide association studies identifies common susceptibility polymorphisms for colorectal and endometrial cancer near SH2B3 and TSHZ1.	Colorectal or endometrial cancer	5,725 European ancestry colorectal carcinoma cases, 2,212 European ancestry endometrial carcinoma cases, 13,396 European ancestry controls	NA	7q36.1	EZH2	rs4727012-C	0.891	1E-6	(opposite direction)	1.18	[1.10-1.26]	Illumina [up to 6000000] (imputed)	N
1720	chr7	148772668	148772669	rs78281959	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	7q36.1	ZNF786	rs78281959-T	0.0652	8E-6		0.0587	[0.033-0.084] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1720	chr7	148776358	148776359	rs564473618	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7q36.1		rs564473618-?	NR	9E-13				NR [~ 8900000] (imputed)	N
1720	chr7	148783936	148783937	rs34115320	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	7q36.1	ZNF786	rs34115320-C	0.6417	4E-10		0.02350241	[0.016-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1720	chr7	148783936	148783937	rs34115320	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	7q36.1	ZNF786	rs34115320-C	0.6417	1E-10		0.02415643	[0.017-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1720	chr7	148853953	148853953	rs372539308	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	7q36.1	ZNF398	rs372539308-CA	0.766865	6E-16		0.022527019	[0.017-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
1720	chr7	148869276	148869277	rs4727027	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	7q36.1	ZNF398	rs4727027-A	0.6312	2E-28		0.04102287	[0.034-0.048] unit increase	Affymetrix [~ 2500000] (imputed)	N
1720	chr7	148869276	148869277	rs4727027	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	7q36.1	ZNF398	rs4727027-A	0.6313	1E-38		0.04846447	[0.041-0.056] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1720	chr7	148869276	148869277	rs4727027	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	7q36.1	ZNF398	rs4727027-A	0.6312	7E-41		0.04964233	[0.042-0.057] unit increase	Affymetrix [~ 2500000] (imputed)	N
1720	chr7	148869276	148869277	rs4727027	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	7q36.1	ZNF398	rs4727027-A	0.6313	1E-40		0.04966556	[0.042-0.057] unit increase	Affymetrix [~ 2500000] (imputed)	N
1720	chr7	148869276	148869277	rs4727027	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	7q36.1	ZNF398	rs4727027-A	0.6312	2E-32		0.04404392	[0.037-0.051] unit increase	Affymetrix [~ 2500000] (imputed)	N
1720	chr7	148870107	148870108	rs6961605	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	7q36.1		rs6961605-?	NR	3E-77				NR [~ 8900000] (imputed)	N
1720	chr7	148879950	148879951	rs1044358	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	7q36.1	C3orf49, THOC7, ATXN7, PSMD6	rs1044358-?		4E-9				NR [7428630] (imputed)	N
1720	chr7	148881882	148881882	rs542516077	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	7q36.1	NR	rs542516077-?	NR	4E-8	(left hippocampus)			NR [9227495] (imputed)	N
1720	chr7	148882616	148882616	rs34186440	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	7q36.1		rs34186440-CA	NR	6E-46		0.0262	[0.023-0.03] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
1720	chr7	148886057	148886058	rs13231262	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	7q36.1		rs13231262-T	NR	3E-9		0.0149	[0.01-0.02] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1720	chr7	148886057	148886058	rs13231262	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	7q36.1		rs13231262-T	NR	9E-15		0.0195	[0.015-0.024] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
1720	chr7	148886057	148886058	rs13231262	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	7q36.1	RP4-800G7.1	rs13231262-T	0.656378	2E-13		0.017185597	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1720	chr7	148886057	148886058	rs13231262	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	7q36.1	RP4-800G7.1	rs13231262-T	0.65636	3E-19		0.020920629	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1720	chr7	148886057	148886058	rs13231262	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	7q36.1	RP4-800G7.1	rs13231262-T	0.656419	1E-95		0.048423495	[0.044-0.053] unit increase	Affymetrix [93095623] (imputed)	N
1720	chr7	148886057	148886058	rs13231262	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q36.1	NR	rs13231262-T	0.702687	3E-13				Affymetrix, Illumina [24649327] (imputed)	N
1720	chr7	148886057	148886058	rs13231262	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	7q36.1	NR	rs13231262-T	0.655918	4E-16		0.01579	[0.012-0.02] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1720	chr7	148886057	148886058	rs13231262	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q36.1	NR	rs13231262-T	0.682661	6E-22				Affymetrix, Illumina [23114412] (imputed)	N
1720	chr7	148886057	148886058	rs13231262	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	7q36.1	NR	rs13231262-T	0.655938	1E-23		0.0203	[0.016-0.024] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
1720	chr7	148886057	148886058	rs13231262	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	7q36.1		rs13231262-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1720	chr7	148887941	148887942	rs12530946	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	7q36.1	ZNF282	rs12530946-G	0.613641	3E-73		0.041196574	[0.037-0.046] unit increase	Affymetrix [93095623] (imputed)	N
1720	chr7	148887941	148887942	rs12530946	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q36.1	NR	rs12530946-G	0.650915	1E-97				Affymetrix, Illumina [19872809] (imputed)	N
1720	chr7	148887941	148887942	rs12530946	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	7q36.1	NR	rs12530946-G	0.613323	4E-97		0.042755	[0.039-0.047] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
1720	chr7	148896685	148896686	rs543386338	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference	1,254 whole genome sequenced European ancestry individuals, 3,074 whole genome sequenced individuals, 29,716 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 701 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,050 Mylopotamos (founder/genetic isolate) individuals, 883 Pomak (founder/genetic isolate) individuals	205,909 European ancestry individuals	7q36.1	ZNF282	rs543386338-T	0.0025	6E-6		0.5941	[0.34-0.85] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1721	chr7	148907848	148907849	rs10952805	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	7q36.1		rs10952805-G	0.371	5E-18				Affymetrix [10369434] (imputed)	N
1721	chr7	148966948	148966949	rs6958858	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	7q36.1	ZNF783	rs6958858-C	0.486543	5E-8		0.014217	[0.0091-0.0193] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1721	chr7	148977742	148977743	rs73479996	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	7q36.1	ZNF783	rs73479996-G	0.932313	4E-10		0.0225623	[0.015-0.03] unit increase	NR [13737936] (imputed)	N
1721	chr7	148977742	148977743	rs73479996	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	7q36.1		rs73479996-?	NR	5E-12				NR [~ 8900000] (imputed)	N
1721	chr7	149005478	149005479	rs17171197	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	7q36.1	ZNF212	rs17171197-?	NR	4E-6	(adenosine diphosphate)	0.20017436	[0.12-0.28] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1721	chr7	149025919	149025920	rs61109185	28155865	Chen H	2017-02-03	Sci Rep	A Genome-Wide Association Study Identifies Genetic Variants Associated with Mathematics Ability.	Mathematical ability	998 Han Chinese ancestry children	599 Han Chinese ancestry children	7q36.1	NR	rs61109185-G	0.06	8E-6		3.17	[1.78-4.56] unit decrease	Affymetrix [at least 1108437]	N
1722	chr7	149086277	149086278	rs138909416	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Lean body mass	3,399 whole genome sequenced individuals, 11,801 European ancestry individuals	10,676 European ancestry individuals	7q36.1	AC004941.3	rs138909416-A	0.9971	3E-6		0.6793	[0.39-0.97] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1722	chr7	149086687	149086688	rs191017414	34387878	Kim KY	2021-08-13	Hepatology	Genome-wide association of individual vulnerability with alcoholic liver disease: A Korean Genome and Epidemiology Study.	Alcohol-associated liver disease in non drinkers	782 Korean ancestry cases, 18,058 Korean ancestry controls	NA	7q36.1		rs191017414-?	NR	8E-6		2.123	[1.526-2.952]	Affymetrix [7975321] (imputed)	N
1722	chr7	149152905	149152906	rs3735318	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	7q36.1		rs3735318-A	NR	2E-8		0.0115	[0.0074-0.0156] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1722	chr7	149152905	149152906	rs3735318	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	7q36.1		rs3735318-A	0.5393	3E-10		0.08476	[0.058-0.111] mmHg decrease	Affymetrix, Illumina [242866] (imputed)	N
1722	chr7	149153833	149153834	rs117483136	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	7q36.1	NR	rs117483136-T	0.016375	8E-21		0.070869	[0.056-0.086] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1723	chr7	149160885	149160886	rs11974139	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	7q36.1	NR	rs11974139-C	0.284564	5E-11		0.013842	[0.0097-0.018] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1723	chr7	149180499	149180500	rs6972751	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	7q36.1	NR	rs6972751-?	NR	2E-6		4.766	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1723	chr7	149197363	149197364	rs855917	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Cerebral aneurysm	1,818 Japanese ancestry female cases, 94,928 Japanese ancestry female controls	NA	7q36.1		rs855917-G	0.62640033	3E-8		1.2243761	[1.140028059-1.314964778]	Illumina [8919992] (imputed)	N
1723	chr7	149199963	149199964	rs115476423	28498854	Liang J	2017-05-12	PLoS Genet	Single-trait and multi-trait genome-wide association analyses identify novel loci for blood pressure in African-ancestry populations.	Blood pressure traits (multi-trait analysis)	Up to 31,155 African individuals	Up to 4,187 African individuals, up to 14,016 Korean ancestry individuals, up to 23,914 European ancestry individuals, up to 12,278 Hispanic individuals	7q36.1	NR	rs115476423-?	NR	5E-6	(Het)			Affymetrix, Illumina [at least 30072738] (imputed)	N
1723	chr7	149203661	149203662	rs855913	19451621	Landers JE	2009-05-18	Proc Natl Acad Sci U S A	Reduced expression of the Kinesin-Associated Protein 3 (KIFAP3) gene increases survival in sporadic amyotrophic lateral sclerosis.	Amyotrophic lateral sclerosis	1,821 cases, 2,258 controls	538 cases, 556 controls	7q36.1	ZNF746	rs855913-A	NR	4E-8	(survival)	1.08	[0.70-1.46] years increase	Illumina [288357]	N
1723	chr7	149238822	149238823	rs62490267	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	7q36.1	NR	rs62490267-C	0.2791	5E-8		0.031	[0.02-0.042] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1723	chr7	149261824	149261825	rs117107603	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	7q36.1		rs117107603-C	0.984	1E-11		0.3	[0.21-0.39] % increase	Affymetrix [NR] (imputed)	N
1723	chr7	149261824	149261825	rs117107603	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	7q36.1	ZNF767	rs117107603-A	0.016149	1E-14		0.0702678	[0.054-0.086] unit decrease	Affymetrix [93095623] (imputed)	N
1723	chr7	149261824	149261825	rs117107603	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	7q36.1	ZNF767	rs117107603-A	0.016146	2E-16		0.071657	[0.055-0.089] unit decrease	Affymetrix [93095623] (imputed)	N
1723	chr7	149261824	149261825	rs117107603	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q36.1	NR	rs117107603-A	0.0163065	6E-19				Affymetrix, Illumina [24246363] (imputed)	N
1723	chr7	149261824	149261825	rs117107603	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q36.1	NR	rs117107603-A	0.0163515	6E-17				Affymetrix, Illumina [20825802] (imputed)	N
1723	chr7	149261824	149261825	rs117107603	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	7q36.1		rs117107603-?	NR	1E-18				NR [~ 8900000] (imputed)	N
1723	chr7	149289463	149289464	rs354033	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	7q36.1	ZNF767P	rs354033-G	NR	8E-10		1.0813	NR	Affymetrix, Illumina [8278136] (imputed)	N
1723	chr7	149289463	149289464	rs354033	21833088	Sawcer S	2011-08-11	Nature	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	7q36.1	ZNF767, ZNF746	rs354033-G	NR	5E-9		1.11	[1.1-1.13]	Illumina [465434]	N
1723	chr7	149289809	149289810	rs10952821	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	7q36.1	NR	rs10952821-?	NR	3E-6		4.662	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1724	chr7	149313810	149313811	rs735120	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	7q36.1	ZNF767	rs735120-T	0.252695	3E-9		0.015297904	[0.01-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1724	chr7	149317107	149317108	rs117493280	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	7q36.1	NR	rs117493280-?	NR	3E-6		7655.357	NR unit decrease	Illumina [2379855]	N
1724	chr7	149330571	149330571	rs200921911	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	7q36.1	NR	rs200921911-I	0.015575	1E-18		0.072464	[0.056-0.089] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
1724	chr7	149370113	149370113	rs112058662	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interferon gamma levels	7,701 Finnish ancestry individuals	NA	7q36.1	NR	rs112058662-C		1E-6		0.0863	[0.052-0.121] SD units increase	NR [10700000] (imputed)	N
1724	chr7	149383865	149383866	rs149962328	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	7q36.1	ZNF467	rs149962328-T	0.0093	2E-8	(C5-OH:C3-DC)	0.5872	[0.41-0.76] unit increase	Illumina [~ 47000000] (imputed)	N
1724	chr7	149410637	149410638	rs855749	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Perceived intensity of sweet substances	1,757 European ancestry twins	NA	7q36.1	KRBA1	rs855749-G	0.58	7E-6		0.17	[0.092-0.248] unit increase	Illumina [4381914] (imputed)	N
1724	chr7	149410637	149410638	rs855749	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Perceived intensity of aspartame	1,757 European ancestry twins	NA	7q36.1	KRBA1	rs855749-G	0.58	1E-6		0.18	[0.1-0.26] unit increase	Illumina [4381914] (imputed)	N
1724	chr7	149419634	149419635	rs75701347	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q36.1	NR	rs75701347-G	0.113743	1E-10				Affymetrix, Illumina [24588908] (imputed)	N
1724	chr7	149419634	149419635	rs75701347	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	7q36.1	NR	rs75701347-G	0.115377	2E-13		0.021082	[0.015-0.027] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1724	chr7	149419720	149419721	rs10240931	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	7q36.1	KRBA1	rs10240931-C	0.115342	6E-15		0.027529547	[0.021-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
1725	chr7	149422202	149422203	rs7808442	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	7q36.1	KRBA1	rs7808442-A	0.115181	3E-9		0.020949118	[0.014-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
1725	chr7	149427548	149427549	rs536397959	28234671	Nandakumar P	2017-07-01	J Hypertens	Rare coding variants associated with blood pressure variation in 15 914 individuals of African ancestry.	Systolic blood pressure	11,156 African American individuals, 4,758 African ancestry individuals	NA	7q36.1	KRBA1	rs536397959-?	0.0000628	2E-8		73.65	[47.8-99.5] unit increase	Illumina [105487]	N
1725	chr7	149428601	149428602	rs55727837	31624269	Terao C	2019-10-17	Nat Commun	GWAS of mosaic loss of chromosome Y highlights genetic effects on blood cell differentiation.	Mosaic loss of chromosome Y (Y chromosome dosage)	95,380 Japanese men	NA	7q36.1	KRBA1	rs55727837-T	0.11	1E-19		0.061	NR unit increase	Illumina [9591901] (imputed)	N
1725	chr7	149428601	149428602	rs55727837	31624269	Terao C	2019-10-17	Nat Commun	GWAS of mosaic loss of chromosome Y highlights genetic effects on blood cell differentiation.	Mosaic loss of chromosome Y (Y chromosome dosage)	205,011 men	NA	7q36.1	KRBA1	rs55727837-G	0.89	1E-34		0.022	unit increase	NR [NR]	N
1725	chr7	149430475	149430476	rs748441912	27777418	Wong ML	2016-10-25	Mol Psychiatry	The PHF21B gene is associated with major depression and modulates the stress response.	Major depressive disorder	203 Mexican American cases, 196 Mexican American controls	NA	7q36.1	KRBA1	rs748441912-?	NR	5E-7				Illumina [83898]	N
1725	chr7	149465418	149465419	rs113975478	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	7q36.1	NR	rs113975478-?	NR	2E-8				Illumina [7760689] (imputed)	N
1725	chr7	149474621	149474622	rs73727605	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	NA	7q36.1	ZNF467	rs73727605-G	0.9337	2E-11		0.2853	[0.2-0.37] unit decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1725	chr7	149478320	149478321	rs855679	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	7q36.1	NR	rs855679-T	0.913329	3E-8		0.0197836	[0.013-0.027] unit decrease	NR [NR]	N
1725	chr7	149539493	149539494	rs139243855	34074324	Wan JY	2021-06-01	Diabetol Metab Syndr	Genome-wide association analysis of metabolic syndrome quantitative traits in the GENNID multiethnic family study.	Triglyceride levels	281 African American individuals from 73 families, 516 European ancestry individuals from 75 families, 125 Japanese American individuals from 15 families, 598 Mexican American individuals from 96 families	NA	7q36.1	ZNF862	rs139243855-C	0.01	2E-7	(African American)	1.4	[0.87-1.93] unit increase	Illumina [up to 13042663] (imputed)	N
1725	chr7	149549008	149549009	rs116932763	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	7q36.1	Intergenic	rs116932763-A	NR	2E-7	(between families)	5.171	unit increase	Affymetrix [up to 15107142] (imputed)	N
1726	chr7	149597276	149597277	rs55787219	28030426	Mahmoudpour SH	2017-03-27	Pharmacogenet Genomics	Meta-analysis of genome-wide association studies on the intolerance of angiotensin-converting enzyme inhibitors.	Angiotensin-converting enzyme inhibitor intolerance	972 European ancestry intolerant individuals, 4,189 European ancestry tolerant individuals	NA	7q36.1	ATP6V0E2	rs55787219-?	0.642367	6E-6		1.4299707	[1.22-1.67]	Affymetrix, Illumina [NR] (imputed)	N
1726	chr7	149622009	149622010	rs115972394	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		7q36.1	Intergenic	rs115972394-A	0.147	6E-6	(liability model)	0.11	[0.051-0.169] unit increase	NR [19725427] (imputed)	N
1726	chr7	149638336	149638337	rs7804216	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (90 or 130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	7q36.1	intergenic	rs7804216-?	NR	1E-6		0.194	[0.1-0.29] unit decrease	Illumina [at least 13000000] (imputed)	N
1727	chr7	149752240	149752241	rs10952242	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	7q36.1	NR	rs10952242-?	NR	4E-8				Affymetrix [NR]	N
1728	chr7	149866113	149866114	rs6464052	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	7q36.1	NR	rs6464052-?	NR	3E-23		9.918	NR z score increase	Illumina [at least 830937] (imputed)	N
1728	chr7	149881667	149881668	rs10251233	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Alcohol consumption x experiences in childhood (felt loved by family member) interaction	41,648 European ancestry individuals	NA	7q36.1		rs10251233-?	NR	9E-9		1.2196	[0.8-1.64] unit decrease	Affymetrix [NR] (imputed)	N
1729	chr7	150013392	150013393	rs7806429	25521368	Tonjes A	2014-12-18	PLoS Genet	Genome wide meta-analysis highlights the role of genetic variation in RARRES2 in the regulation of circulating serum chemerin.	Circulating chemerin levels	1,967 European ancestry individuals, 824 Sorbian (founder/genetic isolate) individuals	967 individuals	7q36.1	ACTR3C	rs7806429-T	NR	8E-14	(European)	0.0669	[0.049-0.084] unit decrease	Affymetrix [2023499] (imputed)	N
1729	chr7	150019627	150019628	rs2108852	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	7q36.1		rs2108852-C	NR	9E-10		0.013	[0.0089-0.0171] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1729	chr7	150020380	150020381	rs1962004	33545615	Hsu LA	2021-01-19	Atherosclerosis	Circulating chemerin levels are determined through circulating platelet counts in nondiabetic Taiwanese people: A bidirectional Mendelian randomization study.	Chemerin levels	3,887 Han Chinese ancestry individuals	NA	7q36.1	RARRES2	rs1962004-?	NR	4E-35		0.031	[0.026-0.036] unit increase (adjusted)	Affymetrix [610203]	N
1729	chr7	150025366	150025367	rs4395803	28654678	Mandage R	2017-06-27	PLoS One	Genetic factors affecting EBV copy number in lymphoblastoid cell lines derived from the 1000 Genome Project samples.	Epstein-Barr virus copy number in lymphoblastoid cell lines	389 East Asian ancestry individuals, 189 South Asian ancestry individuals, 492 European ancestry individuals, 467 Sub-Saharan African ancestry individuals, 59 African American individuals, 157 Hispanic/Latino individuals	NA	7q36.1	LRRC61	rs4395803-?	NR	4E-6	(AA and Sub-Saharan African)			NR [at least 880000]	N
1729	chr7	150035458	150035459	rs1047586	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	7q36.1	Intergenic	rs1047586-T	0.734	4E-8	(MTAG)	0.0082	[0.0053-0.0111] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1729	chr7	150036663	150036664	rs17173608	24964207	Mullins N	2014-06-25	Am J Med Genet B Neuropsychiatr Genet	Genetic relationships between suicide attempts, suicidal ideation and major psychiatric disorders: a genome-wide association and polygenic scoring study.	Suicide attempts in depression or bipolar disorder	426 European ancestry cases, 2,844 European ancestry controls	NA	7q36.1	RARRES2	rs17173608-G	0.058	2E-7		1.93	[1.69-2.19]	Illumina [up to 503016]	N
1729	chr7	150039554	150039555	rs3735167	30866520	Er LK	2019-03-07	Int J Mol Sci	Circulating Chemerin Levels, but not the RARRES2 Polymorphisms, Predict the Long-Term Outcome of Angiographically Confirmed Coronary Artery Disease.	Chemerin levels	2,197 Taiwanese individuals	NA	7q36.1	RARRES2	rs3735167-?		2E-21		0.033	[0.027-0.039] unit increase	Affymetrix [614820]	N
1729	chr7	150039554	150039555	rs3735167	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	7q36.1	RARRES2	rs3735167-C	0.7421875	9E-46	(RARRES2, 3079_62_2)	0.39394915	[0.34-0.45] unit decrease	Illumina [> 1000000] (imputed)	N
1729	chr7	150043204	150043205	rs2098053	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RARRES2	5,349 Icelandic ancestry individuals	NA	7q36.1		rs2098053-A	0.2601	1E-71		0.34363	[0.31-0.38] unit increase	Illumina [7506463] (imputed)	N
1729	chr7	150045301	150045302	rs10282458	29234017	Carayol J	2017-12-12	Nat Commun	Protein quantitative trait locus study in obesity during weight-loss identifies a leptin regulator.	Protein levels in obesity	494 European ancestry individuals	NA	7q36.1	NR	rs10282458-?	NR	2E-10	(TIG2)	0.12	[0.085-0.155] unit increase	Illumina [4020654] (imputed)	N
1729	chr7	150045909	150045910	rs9640161	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	7q36.1	LRRC61, ZBED6CL	rs9640161-A	0.3708207	3E-16	(EA, Retinoic acid receptor responder protein 2)	0.3473	[0.27-0.43] unit increase	Affymetrix [509946]	N
1729	chr7	150045909	150045910	rs9640161	25521368	Tonjes A	2014-12-18	PLoS Genet	Genome wide meta-analysis highlights the role of genetic variation in RARRES2 in the regulation of circulating serum chemerin.	Circulating chemerin levels	1,967 European ancestry individuals, 824 Sorbian (founder/genetic isolate) individuals	967 individuals	7q36.1	RARRES2	rs9640161-C	NR	3E-8	(European)	0.0475	[0.031-0.064] unit decrease	Affymetrix [2023499] (imputed)	N
1729	chr7	150050110	150050111	rs11771693	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	7q36.1	RARRES2	rs11771693-A	0.6721	3E-10		0.1673	[0.12-0.22] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1729	chr7	150050426	150050427	rs10259796	25521368	Tonjes A	2014-12-18	PLoS Genet	Genome wide meta-analysis highlights the role of genetic variation in RARRES2 in the regulation of circulating serum chemerin.	Circulating chemerin levels	1,967 European ancestry individuals, 824 Sorbian (founder/genetic isolate) individuals	967 individuals	7q36.1	RARRES2, REPIN1	rs10259796-T	NR	2E-10	(European)	0.0586	[0.04-0.077] unit decrease	Affymetrix [2023499] (imputed)	N
1729	chr7	150064865	150064866	rs6946097	25521368	Tonjes A	2014-12-18	PLoS Genet	Genome wide meta-analysis highlights the role of genetic variation in RARRES2 in the regulation of circulating serum chemerin.	Circulating chemerin levels	1,967 European ancestry individuals, 824 Sorbian (founder/genetic isolate) individuals	967 individuals	7q36.1	REPIN1	rs6946097-T	NR	9E-9	(European)	0.0499	[0.033-0.067] unit increase	Affymetrix [2023499] (imputed)	N
1730	chr7	150084459	150084460	rs7810240	28736931	Rotroff DM	2017-07-24	Clin Pharmacol Ther	Genetic Variants in HSD17B3, SMAD3, and IPO11 Impact Circulating Lipids in Response to Fenofibrate in Individuals With Type 2 Diabetes.	Total cholesterol change in response to fenofibrate in statin-treated type 2 diabetes	781 European ancestry individuals, 138 African American ancestry individuals, 345 unknown ancestry individuals		7q36.1	ZNF775	rs7810240-?	NR	2E-7		0.015	unit decrease	Affymetrix, Illumina [8129838] (imputed)	N
1730	chr7	150133062	150133063	rs10231372	29947131	Smit DJA	2018-06-26	Hum Brain Mapp	Genome-wide association analysis links multiple psychiatric liability genes to oscillatory brain activity.	Electroencephalogram traits	up to 8,425 European and unknown ancestry individuals	NA	7q36.1	NR	rs10231372-?	NR	3E-8	(alphaCz)	5.548	z score decrease	Affymetrix, Illumina, Perlegen [at least 4959085] (imputed)	N
1730	chr7	150187082	150187083	rs78809000	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	7q36.1	NR	rs78809000-?	NR	1E-7		2495.889	NR unit decrease	Illumina [2379855]	N
1730	chr7	150206214	150206215	rs59621822	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	7q36.1	NR	rs59621822-G	0.442292	3E-10		0.011771	[0.0081-0.0154] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1730	chr7	150206582	150206583	rs12216545	28472463	Mullin BH	2017-05-04	Hum Mol Genet	Genome-wide association study meta-analysis for quantitative ultrasound parameters of bone identifies five novel loci for broadband ultrasound attenuation.	Bone ultrasound measurement (broadband ultrasound attenuation)	1,268 whole genome sequenced European ancestry women, 8,880 European ancestry women, 6,479 European ancestry men	NA	7q36.1	GIMAP7	rs12216545-A	0.38	1E-7	(male)	0.1	[0.061-0.139] unit decrease	Illumina [11973598] (imputed)	N
1731	chr7	150209635	150209636	rs55700285	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	7q36.1		rs55700285-G	0.768	6E-11				Affymetrix [10369434] (imputed)	N
1731	chr7	150209635	150209636	rs55700285	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	7q36.1	NR	rs55700285-T	NR	2E-9		0.0171	[0.011-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
1731	chr7	150209635	150209636	rs55700285	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	7q36.1	GIMAP7	rs55700285-T	0.231483	5E-19		0.023625454	[0.018-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1731	chr7	150209635	150209636	rs55700285	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	7q36.1	GIMAP7	rs55700285-T	0.231428	4E-9		0.015606832	[0.01-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1731	chr7	150209732	150209733	rs111350935	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q36.1	NR	rs111350935-C	0.34253	6E-10				Affymetrix, Illumina [24332387] (imputed)	N
1731	chr7	150210147	150210148	rs7784108	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	7q36.1		rs7784108-C	NR	4E-15		0.0221	[0.017-0.028] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
1731	chr7	150210213	150210213	rs76902898	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	7q36.1	STRADBP1	rs76902898-?	NR	1E-11		0.0211	[0.016-0.027] unit increase	Affymetrix [5701386] (imputed)	N
1731	chr7	150217308	150217309	rs3735080	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	7q36.1		rs3735080-T	NR	1E-10		0.0157	[0.011-0.02] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
1731	chr7	150217308	150217309	rs3735080	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	7q36.1	NR	rs3735080-T	NR	9E-12		0.0194	[0.014-0.025] unit increase	Affymetrix [9000000] (imputed)	N
1731	chr7	150217308	150217309	rs3735080	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	7q36.1	NR	rs3735080-T	NR	5E-9		0.0174	[0.012-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
1731	chr7	150217308	150217309	rs3735080	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	7q36.1	NR	rs3735080-T	NR	2E-10		0.0189	[0.013-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
1731	chr7	150217308	150217309	rs3735080	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	7q36.1	NR	rs3735080-T	NR	1E-10		0.0183	[0.013-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
1731	chr7	150217308	150217309	rs3735080	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Galectin-3 levels	21,758 European ancestry individuals	9,173 individuals	7q36.1		rs3735080-T	0.24	8E-21		0.087	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1731	chr7	150217308	150217309	rs3735080	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	7q36.1	GIMAP7	rs3735080-T	0.230003	2E-24		0.026744856	[0.022-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
1731	chr7	150217308	150217309	rs3735080	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	7q36.1	GIMAP7	rs3735080-T	0.230027	6E-20		0.024096066	[0.019-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1731	chr7	150217308	150217309	rs3735080	31178129	Spracklen CN	2019-06-06	Am J Hum Genet	Exome-Derived Adiponectin-Associated Variants Implicate Obesity and Lipid Biology.	Adiponectin levels	up to 60,465 European ancestry individuals, up to 2,568 East Asian ancestry individuals, up to 3,271 African American individuals, up to 1,435 Hispanic individuals	NA	7q36.1	GIMAP7	rs3735080-T	0.244629489881752	1E-14		0.05144602	unit decrease	Illumina [265780]	N
1731	chr7	150217308	150217309	rs3735080	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	7q36.1	GIMAP7	rs3735080-T	0.2296	5E-10		0.02622191	[0.018-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
1731	chr7	150218305	150218306	rs12530578	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	7q36.1		rs12530578-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1731	chr7	150227226	150227227	rs7788962	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	7q36.1	GIMAP7, GIMAP4	rs7788962-A	0.61	7E-9		0.014	[0.0091-0.0189] unit decrease	Affymetrix, Illumina [10537485] (imputed)	N
1731	chr7	150227226	150227227	rs7788962	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	7q36.1	GIMAP7, GIMAP4	rs7788962-A	0.6	6E-8	(EA)	0.0138	[0.0089-0.0187] unit decrease	Affymetrix, Illumina [10537485] (imputed)	N
1731	chr7	150238358	150238359	rs939960	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	7q36.1	ALDH7A1P3	rs939960-A	0.2301	2E-10		0.02702961	[0.019-0.035] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1731	chr7	150265439	150265439	rs10626234	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	7q36.1	GIMAP4	rs10626234-ATTCT	0.37313	3E-9		0.013533229	[0.0091-0.018] unit decrease	Affymetrix [93095623] (imputed)	N
1731	chr7	150272634	150272635	rs7790014	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q36.1	NR	rs7790014-C	0.411932	1E-10				Affymetrix, Illumina [19872809] (imputed)	N
1731	chr7	150272634	150272635	rs7790014	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	7q36.1	NR	rs7790014-C	0.374697	2E-10		0.012959	[0.009-0.017] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
1731	chr7	150278588	150278589	rs4725922	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	7q36.1		rs4725922-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1731	chr7	150281974	150281975	rs1578916	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	7q36.1	NR	rs1578916-T	0.2384	1E-7		0.0111	[0.007-0.0152] unit increase	NR [~ 27400000] (imputed)	N
1731	chr7	150294433	150294434	rs35873531	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q36.1	NR	rs35873531-A	0.218566	2E-25				Affymetrix, Illumina [23472807] (imputed)	N
1731	chr7	150294475	150294476	rs35114152	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	7q36.1	NR	rs35114152-G	0.225583	2E-27		0.024676	[0.02-0.029] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1731	chr7	150296495	150296496	rs13230842	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	7q36.1	GIMAP7, GIMAP4	rs13230842-?	NR	3E-8				Affymetrix, Illumina [10537485] (imputed)	N
1731	chr7	150296495	150296496	rs13230842	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	7q36.1	GIMAP7, GIMAP4	rs13230842-?	NR	2E-8	(EA)			Affymetrix, Illumina [10537485] (imputed)	N
1731	chr7	150296608	150296609	rs535241194	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	7q36.1	GIMAP4	rs535241194-A	0.785508	3E-17		0.020829	[0.016-0.026] unit decrease	Affymetrix [NR] (imputed)	N
1731	chr7	150312473	150312474	rs12540285	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	7q36.1		rs12540285-G	NR	1E-10		0.0168	[0.012-0.022] unit decrease	Affymetrix, Illumina [20529698] (imputed)	N
1731	chr7	150317277	150317278	rs13230583	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	7q36.1	intergenic	rs13230583-C	0.2056	6E-10		0.02751639	[0.019-0.036] unit increase	Affymetrix [~ 2500000] (imputed)	N
1731	chr7	150325174	150325175	rs13234724	28107422	de Vries PS	2017-01-20	PLoS One	Comparison of HapMap and 1000 Genomes Reference Panels in a Large-Scale Genome-Wide Association Study.	Fibrinogen levels	91,953 European ancestry individuals (imputed to 1000 Genomes)		7q36.1	GIMAP6	rs13234724-?	NR	2E-9		0.0076	unit increase	Affymetrix, Illumina [10883314] (imputed)	N
1731	chr7	150326561	150326562	rs13226190	28107422	de Vries PS	2017-01-20	PLoS One	Comparison of HapMap and 1000 Genomes Reference Panels in a Large-Scale Genome-Wide Association Study.	Fibrinogen levels	91,953 European ancestry individuals (imputed to HapMap)		7q36.1	GIMAP6	rs13226190-?	NR	2E-10		0.008	unit increase	Affymetrix, Illumina [2749429] (imputed)	N
1731	chr7	150327423	150327424	rs62491812	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	7q36.1		rs62491812-A	0.802908	6E-10		1.0330342	[1.02-1.04]	Affymetrix, Illumina [9851866] (imputed)	N
1731	chr7	150327423	150327424	rs62491812	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7q36.1	NR	rs62491812-C	NR	1E-9		0.026	unit increase	Affymetrix [at least 7091467] (imputed)	N
1731	chr7	150327423	150327424	rs62491812	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	7q36.1	NR	rs62491812-C	0.798	2E-7	(EA)	0.025	unit increase	Affymetrix [at least 7091467] (imputed)	N
1731	chr7	150328199	150328200	rs62491814	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	7q36.1	NR	rs62491814-G	0.797204	2E-14		0.0193264	[0.014-0.024] unit increase	NR [NR]	N
1731	chr7	150331376	150331377	rs34940374	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	7q36.1	GIMAP6	rs34940374-G	0.817026	6E-12		0.0170097	[0.012-0.022] unit increase	Affymetrix [NR] (imputed)	N
1732	chr7	150341554	150341555	rs73474862	34197840	Mehrotra R	2021-06-28	Kidney Int	A genome-wide association study suggests correlations of common genetic variants with peritoneal solute transfer rates in patients with kidney failure receiving peritoneal dialysis.	Peritoneal solute transfer rates in kidney failure treated with peritoneal dialysis	2,212 White ancestry individuals	NA	7q36.1		rs73474862-?	NR	4E-6		0.02	[-0.03--0.01] unit decrease	Illumina [7066544] (imputed)	N
1732	chr7	150361717	150361718	rs7795747	21685187	Siedlinski M	2011-06-16	Thorax	Genome-wide association study of smoking behaviours in patients with COPD.	Age at smoking initiation in chronic obstructive pulmonary disease	3,397 European ancestry cases	NA	7q36.1	GIMAP2	rs7795747-A	0.01	5E-6		0.242	unit increase	Illumina [~ 6300000] (imputed)	N
1732	chr7	150373727	150373728	rs11762408	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	7q36.1	GIMAP6	rs11762408-C	NR	1E-6		1.0665	NR	Affymetrix, Illumina [8278136] (imputed)	N
1732	chr7	150440039	150440040	rs61751050	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	7q36.1	GIMAP1-GIMAP5	rs61751050-?	NR	4E-6		0.292	[0.12-0.46] unit decrease	Illumina [at least 13000000] (imputed)	N
1732	chr7	150444382	150444383	rs6972456	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Skin reflectance (Melanin index)	720 South Asian ancestry individuals		7q36.1	NR	rs6972456-G	NR	6E-6	(conditioned on rs1426654)	0.260626	[0.15-0.37] unit increase	Affymetrix, Illumina [at least 398118] (imputed)	N
1733	chr7	150476672	150476673	rs4725944	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	7q36.1	NR	rs4725944-C	0.390093	5E-8		0.00727243	[0.0047-0.0099] unit increase	Affymetrix [16578495] (imputed)	N
1733	chr7	150476672	150476673	rs4725944	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	7q36.1	NR	rs4725944-C	0.38993999999999995	3E-21		0.00809115	[0.0064-0.0098] unit increase	Affymetrix [16582909] (imputed)	N
1733	chr7	150476672	150476673	rs4725944	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	7q36.1	NR	rs4725944-C	0.390116	2E-15		0.00906686	[0.0067-0.0114] unit increase	Affymetrix [16582621] (imputed)	N
1733	chr7	150476672	150476673	rs4725944	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	7q36.1	NR	rs4725944-C	0.38993999999999995	3E-13		0.00717298	[0.0053-0.009] unit increase	Affymetrix [16582965] (imputed)	N
1733	chr7	150476672	150476673	rs4725944	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	7q36.1	NR	rs4725944-C	0.390116	2E-13		0.00891262	[0.0064-0.0114] unit increase	Affymetrix [16582614] (imputed)	N
1733	chr7	150476887	150476888	rs7806458	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein AOC1	5,367 Icelandic ancestry individuals	NA	7q36.1		rs7806458-G	0.3845	3E-123		0.442419	[0.41-0.48] unit increase	Illumina [7506463] (imputed)	N
1733	chr7	150491850	150491851	rs61057705	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	7q36.1	NR	rs61057705-G	NR	2E-14		0.0194	[0.015-0.024] unit increase	Affymetrix [9000000] (imputed)	N
1733	chr7	150497495	150497496	rs115946508	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	7q36.1		rs115946508-A	NR	8E-14		0.0278	[0.021-0.035] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
1733	chr7	150497495	150497496	rs115946508	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	7q36.1		rs115946508-A	NR	1E-47		0.0571	[0.049-0.065] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
1733	chr7	150497495	150497496	rs115946508	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q36.1	NR	rs115946508-A	0.108308	1E-16				Affymetrix, Illumina [24653286] (imputed)	N
1733	chr7	150498244	150498245	rs114949263	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Albumin levels	115,064 European ancestry individuals	NA	7q36.1		rs114949263-T	0.888632	7E-15		0.050942	[0.038-0.064] unit decrease	NR [11722792] (imputed)	N
1733	chr7	150498244	150498245	rs114949263	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	7q36.1		rs114949263-C	NR	8E-18		0.034	[0.026-0.042] unit increase	Affymetrix, Illumina [20528270] (imputed)	N
1733	chr7	150498244	150498245	rs114949263	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	7q36.1	NR	rs114949263-C	0.11127600000000004	2E-34		0.0150821	[0.012-0.018] unit increase	Affymetrix [16582909] (imputed)	N
1733	chr7	150498244	150498245	rs114949263	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	7q36.1	NR	rs114949263-C	0.11115900000000001	3E-14		0.0139233	[0.01-0.018] unit increase	Affymetrix [16585854] (imputed)	N
1733	chr7	150498244	150498245	rs114949263	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	7q36.1	NR	rs114949263-C	0.11139900000000003	9E-23		0.0167582	[0.013-0.02] unit increase	Affymetrix [16582621] (imputed)	N
1733	chr7	150498244	150498245	rs114949263	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	7q36.1	NR	rs114949263-C	0.11127600000000004	5E-33		0.0167483	[0.014-0.02] unit increase	Affymetrix [16582965] (imputed)	N
1733	chr7	150498244	150498245	rs114949263	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	7q36.1	NR	rs114949263-C	0.11115900000000001	8E-12		0.0151114	[0.011-0.02] unit increase	Affymetrix [16585866] (imputed)	N
1733	chr7	150498244	150498245	rs114949263	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	7q36.1	NR	rs114949263-C	0.11139900000000003	4E-25		0.0187991	[0.015-0.023] unit increase	Affymetrix [16582614] (imputed)	N
1733	chr7	150498244	150498245	rs114949263	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	7q36.1		rs114949263-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1733	chr7	150502468	150502469	rs146541367	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	7q36.1		rs146541367-A	NR	2E-14		0.0308	[0.023-0.039] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
1733	chr7	150502468	150502469	rs146541367	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	7q36.1	TMEM176B	rs146541367-A	0.110769	7E-14		0.026463026	[0.02-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
1733	chr7	150502468	150502469	rs146541367	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	7q36.1	TMEM176B	rs146541367-A	0.110772	7E-14		0.0264904	[0.02-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
1733	chr7	150502468	150502469	rs146541367	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	7q36.1	TMEM176B	rs146541367-A		2E-10		0.022	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
1733	chr7	150504340	150504341	rs7795051	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	7q36.1	TMEM176A	rs7795051-T	NR	1E-8		0.018348	[0.012-0.025] unit increase	Affymetrix [321114] (imputed)	N
1733	chr7	150506494	150506495	rs139995291	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein AOC1	5,367 Icelandic ancestry individuals	NA	7q36.1		rs139995291-G	0.01918	1E-60		1.1353	[1-1.27] unit decrease	Illumina [7506463] (imputed)	N
1733	chr7	150510914	150510915	rs2888674	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	7q36.1	TMEM176A, AOC1	rs2888674-A	0.45	3E-10		6.28	z-score increase	Affymetrix [4311822] (imputed)	N
1733	chr7	150510914	150510915	rs2888674	25979521	de Jong K	2015-06-05	J Allergy Clin Immunol	Genome-wide interaction study of gene-by-occupational exposure and effects on FEV1 levels.	Forced expiratory volume in 1 second (occupational environmental exposures interaction)	12,400 individuals	1,436 individuals	7q36.1	TMEM176A	rs2888674-A	0.46	4E-7	Gases and fumes	123.5	[NR] unit increase	Illumina [up to 221663]	N
1733	chr7	150512171	150512172	rs10231759	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	7q36.1	TMEM176A	rs10231759-C	0.28	4E-9		1.15	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
1733	chr7	150517021	150517022	rs2110001	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	7q36.1	TMEM176A	rs2110001-C	0.69	3E-13		0.031	[NR] unit decrease	Affymetrix, Illumina [2834208] (imputed)	N
1733	chr7	150521095	150521096	rs7787744	34450027	Boer CG	2021-08-24	Cell	Deciphering osteoarthritis genetics across 826,690 individuals from 9 populations.	Osteoarthritis (with total knee replacement)	18,200 European ancestry cases, 233,841 European ancestry controls	NA	7q36.1		rs7787744-A	0.6662	1E-9		1.0810145	[1.054231917-1.108477596]	Affymetrix, Illumina [NR] (imputed)	N
1733	chr7	150522053	150522054	rs4725366	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite concentrations in chronic kidney disease	1,143 European ancestry cases	NA	7q36.1	TMEM176A, AOC1	rs4725366-G	NR	2E-12	(Putrescine)	0.356606	[0.26-0.46] unit decrease	Illumina [up to 9281895] (imputed)	N
1733	chr7	150523543	150523544	rs10452848	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	7q36.1	AOC1	rs10452848-A	0.498125	3E-239	(AOC1, 6209_2_3)	0.76518464	[0.72-0.81] unit decrease	Illumina [> 1000000] (imputed)	N
1733	chr7	150524680	150524681	rs10952289	33510174	Jones G	2021-01-28	Nat Commun	Genome-wide meta-analysis of muscle weakness identifies 15 susceptibility loci in older men and women.	Low hand grip strength (60 years and older) (EWGSOP)	48,596 European ancestry cases, 207,927 European ancestry controls	NA	7q36.1	AOC1	rs10952289-T	0.6564	2E-8		0.0435	[0.028-0.059] unit increase	Affymetrix, Illumina [9457422] (imputed)	N
1733	chr7	150529448	150529449	rs17173637	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	7q36.1	AOC1	rs17173637-T	0.9156	9E-10		0.0294	[0.02-0.039] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1733	chr7	150529448	150529449	rs17173637	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	HDL cholesterol levels	34,930 East Asian ancestry individuals, 187,167 European ancestry individuals	8,741 Chinese ancestry individuals	7q36.1	TMEM176A	rs17173637-T	0.902	2E-8	(Trans-ethnic initial)	0.0363	[0.025-0.047] unit increase (EA Beta values)	Affymetrix, Illumina [~ 1900000] (imputed)	N
1733	chr7	150529448	150529449	rs17173637	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	7q36.1	TMEM176A	rs17173637-C	0.12	2E-8		0.036	[NR] unit decrease	NR [NR] (imputed)	N
1733	chr7	150531274	150531275	rs73165526	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	7q36.1	AOC1	rs73165526-T	0.9169	2E-9		0.0306	[0.021-0.041] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1733	chr7	150537634	150537635	rs62492368	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	7q36.1		rs62492368-A	NR	2E-10		0.0421	[0.029-0.055] unit increase	Affymetrix, Illumina [25845091] (imputed)	N
1733	chr7	150537634	150537635	rs62492368	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	7q36.1		rs62492368-A	NR	6E-13		0.016	[0.012-0.02] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
1733	chr7	150537634	150537635	rs62492368	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	7q36.1	AOC1	rs62492368-A	0.30402	3E-10		0.015255866	[0.01-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1733	chr7	150537634	150537635	rs62492368	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	7q36.1	AOC1	rs62492368-A	0.304016	1E-11		0.016399972	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1733	chr7	150537634	150537635	rs62492368	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	7q36.1	NR	rs62492368-G	0.6848	6E-12		0.0342	[0.024-0.044] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
1733	chr7	150537634	150537635	rs62492368	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	7q36.1	NR	rs62492368-G	0.5958	2E-14		0.0311	[0.023-0.039] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1733	chr7	150537634	150537635	rs62492368	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	7q36.1	AOC1	rs62492368-G	0.694926	2E-16		0.0171783	[0.013-0.021] unit increase	Affymetrix [NR] (imputed)	N
1733	chr7	150537634	150537635	rs62492368	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	7q36.1	AOC1	rs62492368-A	0.3081	1E-10		1.05	[1.03-1.06]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1733	chr7	150539252	150539253	rs6464114	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	7q36.1	AOC1	rs6464114-A	0.46	6E-13	(X - 23668)	0.458	[0.33-0.58] unit decrease	Illumina [7750367] (imputed)	N
1733	chr7	150539252	150539253	rs6464114	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	7q36.1	AOC1	rs6464114-A	0.46	2E-20	(X - 23656)	0.33	[0.26-0.4] unit decrease	Illumina [7750367] (imputed)	N
1733	chr7	150540195	150540196	rs7794796	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	7q36.1	NR	rs7794796-T	NR	7E-12		0.0183	[0.013-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
1733	chr7	150540195	150540196	rs7794796	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	7q36.1	ABP1	rs7794796-C	0.470939	1E-16	(N('1)-acetylspermidine)	0.197	[0.15-0.24] unit increase	Illumina [13039987] (imputed)	N
1733	chr7	150540195	150540196	rs7794796	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	7q36.1	NR	rs7794796-T	0.330757	6E-14		0.0789333	[0.058-0.099] unit increase	Affymetrix [21375087] (imputed)	N
1733	chr7	150540195	150540196	rs7794796	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	7q36.1	NR	rs7794796-T	0.332784	5E-33		0.085602	[0.071-0.1] unit increase	Affymetrix [17914406] (imputed)	N
1733	chr7	150542047	150542048	rs56321085	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	7q36.1	AOC1	rs56321085-G	0.91563	5E-8		0.0196204	[0.013-0.027] unit decrease	Affymetrix [NR] (imputed)	N
1733	chr7	150542514	150542515	rs6977081	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	7q36.1	AOC1	rs6977081-T	0.35	1E-32	(1-methylhistamine)	0.381	[0.32-0.44] unit decrease	Illumina [7750367] (imputed)	N
1733	chr7	150542514	150542515	rs6977081	30833571	Wiberg A	2019-03-04	Nat Commun	A genome-wide association analysis identifies 16 novel susceptibility loci for carpal tunnel syndrome.	Carpal tunnel syndrome	12,312 European ancestry cases, 389,344 European ancestry controls	NA	7q36.1	AOC1	rs6977081-G	0.668	1E-8		1.08	[1.05-1.11]	Affymetrix [84000000] (imputed)	N
1733	chr7	150542514	150542515	rs6977081	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	7q36.1	TMEM176A	rs6977081-?	NR	5E-9	(gamma aminoisobutyric acid)	0.233875	[0.16-0.31] unit increase	Affymetrix [at least 2500000] (imputed)	N
1733	chr7	150542710	150542711	rs6977416	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Triglycerides	429,011 European ancestry individuals	NA	7q36.1		rs6977416-G	0.67	3E-8		0.012	mmol/L decrease	NR [NR] (imputed)	N
1733	chr7	150542710	150542711	rs6977416	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	7q36.1		rs6977416-G	0.67	8E-27				NR [NR] (imputed)	N
1733	chr7	150542710	150542711	rs6977416	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	High density lipoprotein cholesterol levels	392,965 European ancestry individuals	NA	7q36.1		rs6977416-G	0.67	7E-17		0.016	mmol/L increase	NR [NR] (imputed)	N
1733	chr7	150542710	150542711	rs6977416	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	7q36.1		rs6977416-G	0.67	3E-14		0.012	% increase	NR [NR] (imputed)	N
1733	chr7	150542710	150542711	rs6977416	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	7q36.1	AOC1	rs6977416-A	0.3338	1E-113		0.0457	[0.042-0.05] unit increase	Affymetrix [18391927] (imputed)	N
1733	chr7	150542710	150542711	rs6977416	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	7q36.1	AOC1	rs6977416-G	0.665537	7E-14		0.0157237	[0.012-0.02] unit increase	Affymetrix [NR] (imputed)	N
1733	chr7	150542710	150542711	rs6977416	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	7q36.1		rs6977416-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1733	chr7	150542710	150542711	rs6977416	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7q36.1		rs6977416-?	NR	1E-59				NR [~ 8900000] (imputed)	N
1733	chr7	150543720	150543721	rs1005390	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite ratios	Up to 5,591 European ancestry individuals	Up to 1,767 European ancestry individuals	7q36.1	ABP1	rs1005390-T	0.8	3E-16	(Metabolite ratio 1)	0.035	[0.027-0.043] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
1733	chr7	150543720	150543721	rs1005390	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	7q36.1	ABP1	rs1005390-T	0.8	3E-14	(X-03056--N-[3-(2-Oxopyrrolidin-1-yl)propyl]acetamide)	0.026	[0.02-0.032] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
1733	chr7	150554552	150554553	rs1049742	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	7q36.1	NR	rs1049742-T	NR	4E-15		0.0361	[0.027-0.045] unit increase	Affymetrix [9000000] (imputed)	N
1733	chr7	150554552	150554553	rs1049742	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	7q36.1	ABP1	rs1049742-C	0.956699	2E-13	(N('1)-acetylspermidine)	0.408	[0.3-0.52] unit decrease	Illumina [13039987] (imputed)	N
1733	chr7	150556528	150556529	rs148084734	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein AOC1	5,367 Icelandic ancestry individuals	NA	7q36.1		rs148084734-G	0.02413	2E-38		0.799788	[0.68-0.92] unit increase	Illumina [7506463] (imputed)	N
1733	chr7	150556802	150556803	rs55671932	33830993	Johnston KJA	2021-04-08	PLoS Genet	Sex-stratified genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	387,649 British ancestry individuals	NA	7q36.1	AOC1	rs55671932-?	NR	4E-8			[NR]	NR [NR] (imputed)	N
1733	chr7	150557664	150557665	rs1049793	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein AOC1	5,367 Icelandic ancestry individuals	NA	7q36.1		rs1049793-G	0.2831	1E-17		0.176864	[0.14-0.22] unit decrease	Illumina [7506463] (imputed)	N
1733	chr7	150558514	150558515	rs4725969	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	7q36.1	AOC1	rs4725969-C	0.660348	3E-9		0.0123429	[0.0083-0.0164] unit decrease	Affymetrix [NR] (imputed)	N
1733	chr7	150599204	150599205	rs10216051	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Anthropometric traits (multi-trait analysis)	4,988 Spanish ancestry individuals	336,107 British ancestry individuals	7q36.1	AOC1, KCNH	rs10216051-?		5E-17				Illumina [9499600] (imputed)	N
1734	chr7	150602562	150602563	rs7455952	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	RANTES levels	3,421 Finnish ancestry individuals	NA	7q36.1	NR	rs7455952-G		7E-6		0.1556	[0.088-0.223] SD units decrease	NR [10700000] (imputed)	N
1734	chr7	150618508	150618509	rs113843864	32386560	Ramirez J	2020-04-29	Am J Hum Genet	Common Genetic Variants Modulate the Electrocardiographic Tpeak-to-Tend Interval.	TPE interval (resting)	71,338 European ancestry individuals	NA	7q36.1	KCNH2	rs113843864-G	0.752	4E-23		0.059	[0.047-0.071] unit increase	Affymetrix [~ 9000000] (imputed)	N
1734	chr7	150622161	150622162	rs2968864	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	QT interval	3,293 African American individuals, 13,698 Hispanic/Latino individuals, 127 Asian ancestry individuals, 230 Native American ancestry individuals	NA	7q36.1	NR	rs2968864-?	NR	4E-9		1.832214	[1.22-2.44] unit decrease	Illumina [26659972] (imputed)	N
1734	chr7	150622161	150622162	rs2968864	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	7q36.1	NA	rs2968864-T	0.7565	4E-14		0.015	[0.011-0.019] unit increase	NR [~ 27400000] (imputed)	N
1734	chr7	150622161	150622162	rs2968864	19305408	Newton-Cheh C	2009-03-22	Nat Genet	Common variants at ten loci influence QT interval duration in the QTGEN Study.	QT interval	13,685 European ancestry individuals	15,854 European ancestry individuals	7q36.1	KCNH2	rs2968864-C	0.25	8E-16		1.4	[1.06-1.74] msec decrease	Affymetrix, Illumina [up to 2543686] (imputed)	N
1734	chr7	150623136	150623137	rs2968863	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	QT interval	3,293 African American individuals, 13,698 Hispanic/Latino individuals, 127 Asian ancestry individuals, 230 Native American ancestry individuals	NA	7q36.1	NR	rs2968863-?	NR	8E-9		1.779196	[1.18-2.38] unit decrease	Illumina [26659972] (imputed)	N
1734	chr7	150623136	150623137	rs2968863	19305409	Pfeufer A	2009-03-22	Nat Genet	Common variants at ten loci modulate the QT interval duration in the QTSCD Study.	QT interval	15,842 European ancestry individuals	up to 13,602 individuals	7q36.1	KCNH2	rs2968863-T	0.29	2E-15		1.35	[0.90-1.80] ms decrease	Affymetrix, Illumina [2557000] (imputed)	N
1734	chr7	150626596	150626596	rs148064265	32386560	Ramirez J	2020-04-29	Am J Hum Genet	Common Genetic Variants Modulate the Electrocardiographic Tpeak-to-Tend Interval.	TPE interval (resting)	71,338 European ancestry individuals	NA	7q36.1	KCNH2	rs148064265-G	0.792	2E-8	(women)	0.05	[0.032-0.068] unit decrease	Affymetrix [~ 9000000] (imputed)	N
1734	chr7	150626596	150626596	rs148064265	32386560	Ramirez J	2020-04-29	Am J Hum Genet	Common Genetic Variants Modulate the Electrocardiographic Tpeak-to-Tend Interval.	TPE interval (resting)	71,338 European ancestry individuals	NA	7q36.1	KCNH2	rs148064265-G	0.792	1E-13	(men)	0.068	[0.05-0.086] unit decrease	Affymetrix [~ 9000000] (imputed)	N
1734	chr7	150636987	150636988	rs117099428	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	F0428 abundance in stool	5,959 Finnish ancestry individuals	NA	7q36.1		rs117099428-G	0.0147874	4E-8		0.207209	[0.13-0.28] unit increase	Illumina [7980478] (imputed)	N
1734	chr7	150637862	150637863	rs4725982	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	QT interval	3,293 African American individuals, 13,698 Hispanic/Latino individuals, 127 Asian ancestry individuals, 230 Native American ancestry individuals	NA	7q36.1	NR	rs4725982-?	NR	2E-9		1.337812	[0.9-1.77] unit increase	Illumina [26659972] (imputed)	N
1734	chr7	150637862	150637863	rs4725982	20062061	Chambers JC	2010-01-10	Nat Genet	Genetic variation in SCN10A influences cardiac conduction.	Electrocardiographic traits	6,543 Indian Asian ancestry individuals	6,243 Indian Asian ancestry individuals, 5,370 European ancestry individuals	7q36.1	KCNH2	rs4725982-A	NR	3E-6	(QTc interval)	2.08	[1.20-2.96] ms increase	Illumina [303309]	N
1734	chr7	150637862	150637863	rs4725982	19305408	Newton-Cheh C	2009-03-22	Nat Genet	Common variants at ten loci influence QT interval duration in the QTGEN Study.	QT interval	13,685 European ancestry individuals	15,854 European ancestry individuals	7q36.1	KCNH2	rs4725982-T	0.22	5E-16		1.58	[1.23-1.92] msec increase	Affymetrix, Illumina [up to 2543686] (imputed)	N
1734	chr7	150638483	150638484	rs2907948	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	7q36.1	NA	rs2907948-A	0.244	2E-14		0.0145	[0.011-0.018] unit decrease	NR [~ 27400000] (imputed)	N
1734	chr7	150645533	150645534	rs1805123	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		7q36.1	KCNH2	rs1805123-T	0.75472	4E-12		0.0110468	[0.0079-0.0142] unit increase	Affymetrix [12370749]	N
1734	chr7	150645533	150645534	rs1805123	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	7q36.1	NR	rs1805123-?	NR	3E-13				Affymetrix [~ 8270000] (imputed)	N
1734	chr7	150645533	150645534	rs1805123	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	7q36.1		rs1805123-?	NR	3E-13				NR [~ 8900000] (imputed)	N
1734	chr7	150645533	150645534	rs1805123	29273807	Turcot V	2017-12-22	Nat Genet	Protein-altering variants associated with body mass index implicate pathways that control energy intake and expenditure in obesity.	Body mass index	up to 449,889 European ancestry individuals, up to 29,398 South Asian ancestry individuals, up to 27,610 African American individuals, up to 8,839 East Asian individuals, up to 10,772 Hispanic ancestry individuals	up to 196,766 European ancestry individuals	7q36.1	KCNH2	rs1805123-T	0.7784	5E-15		0.0166	[0.012-0.021] unit increase	Illumina [246328]	N
1734	chr7	150647968	150647969	rs2072413	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	QT interval	3,293 African American individuals, 13,698 Hispanic/Latino individuals, 127 Asian ancestry individuals, 230 Native American ancestry individuals	NA	7q36.1	NR	rs2072413-?	NR	3E-10		1.534928	[1.06-2.01] unit decrease	Illumina [26659972] (imputed)	N
1734	chr7	150647968	150647969	rs2072413	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	7q36.1	KCNH2	rs2072413-C	0.7376	5E-8		1.0210178		Affymetrix [11880941] (imputed)	N
1734	chr7	150647968	150647969	rs2072413	24952745	Arking DE	2014-06-22	Nat Genet	Genetic association study of QT interval highlights role for calcium signaling pathways in myocardial repolarization.	QT interval	Up to 70,389 European ancestry individuals, up to 672 Orcadian individuals	Up to 33,316 European ancestry individuals	7q36.1	KCNH2	rs2072413-T	0.266	1E-49		1.68	[1.46-1.9] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1734	chr7	150647969	150647970	rs2072412	32602732	Baldassari AR	2020-06-30	Circ Genom Precis Med	Multi-ethnic Genome-wide Association Study of Decomposed Cardioelectric Phenotypes Illustrates Strategies to Identify and Characterize Evidence of Shared Genetic Effects for Complex Traits.	Electrocardiographic traits (multivariate)	17,873 European ancestry individuals, 12,749 Hispanic individuals, 5,408 African American individuals, 315 Chinese-American individuals	NA	7q36.1	KCNH2	rs2072412-?	NR	1E-11				Affymetrix, Illumina [22000000] (imputed)	N
1734	chr7	150647969	150647970	rs2072412	32527199	van Duijvenboden S	2020-06-11	Circ Genom Precis Med	Genetic Basis and Prognostic Value of Exercise QT Dynamics.	QT dynamics during exercise	28,449 European ancestry women, 24,412 European ancestry men	NA	7q36.1		rs2072412-C	0.729	2E-9		0.035	[0.023-0.047] bpm increase	Affymetrix [9800000] (imputed)	N
1734	chr7	150647969	150647970	rs2072412	32527199	van Duijvenboden S	2020-06-11	Circ Genom Precis Med	Genetic Basis and Prognostic Value of Exercise QT Dynamics.	QT dynamics during exercise	28,449 European ancestry women, 24,412 European ancestry men	NA	7q36.1		rs2072412-C	0.728985	4E-9	(female)	0.0494062	[0.033-0.066] bpm increase	Affymetrix [9800000] (imputed)	N
1734	chr7	150647969	150647970	rs2072412	31607149	Ramirez J	2019-10-14	Circ Arrhythm Electrophysiol	Cardiovascular Predictive Value and Genetic Basis of Ventricular Repolarization Dynamics.	T wave morphology restitution during exercise (MTAG)	51,574 European ancestry individuals	NA	7q36.1	KCNH2	rs2072412-C	0.729	1E-11		0.043	[0.031-0.055] unit increase	NR [~ 9000000] (imputed)	N
1734	chr7	150647969	150647970	rs2072412	31607149	Ramirez J	2019-10-14	Circ Arrhythm Electrophysiol	Cardiovascular Predictive Value and Genetic Basis of Ventricular Repolarization Dynamics.	T wave morphology restitution during exercise	51,574 European ancestry individuals	NA	7q36.1	KCNH2	rs2072412-C	0.729	2E-11		0.042	[0.03-0.054] unit increase	NR [~ 9000000] (imputed)	N
1734	chr7	150649530	150649531	rs1805120	34274964	Duijvenboden S	2021-07-19	Hum Mol Genet	Genomic and pleiotropic analyses of resting QT interval identifies novel loci and overlap with atrial electrical disorders.	QT interval	27,612 European ancestry women	NA	7q36.1		rs1805120-G	0.79	6E-30		0.081	[0.067-0.095] unit decrease	Affymetrix [NR]	N
1734	chr7	150649530	150649531	rs1805120	34274964	Duijvenboden S	2021-07-19	Hum Mol Genet	Genomic and pleiotropic analyses of resting QT interval identifies novel loci and overlap with atrial electrical disorders.	QT interval	24,495 European ancestry men	NA	7q36.1		rs1805120-G	0.79	2E-21		0.068	[0.054-0.082] unit decrease	Affymetrix [NR]	N
1734	chr7	150657094	150657095	rs56282717	31589552	Lind L	2019-10-07	Metab Syndr Relat Disord	Genome-Wide Association Study of the Metabolic Syndrome in UK Biobank.	Metabolic syndrome	291,107 European ancestry individuals	NA	7q36.1	KCNH2	rs56282717-A	0.24425	2E-9		0.0460964	[0.031-0.061] unit decrease	Affymetrix [9463307] (imputed)	N
1734	chr7	150657094	150657095	rs56282717	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	7q36.1	KCNH2	rs56282717-A	0.237794	7E-9	(females)	0.02141	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1734	chr7	150657094	150657095	rs56282717	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	7q36.1	KCNH2	rs56282717-A	0.237794	5E-10	(males)	0.01667	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1734	chr7	150657094	150657095	rs56282717	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	7q36.1	KCNH2	rs56282717-A	0.237794	3E-15		0.01963	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1734	chr7	150657200	150657201	rs12668582	30679814	van Setten J	2019-01-24	Eur J Hum Genet	Genome-wide association meta-analysis of 30,000 samples identifies seven novel loci for quantitative ECG traits.	QT interval	2,332 Erasmus Rucphen Family (founder/genetic isolate) individuals, 24,462 European ancestry individuals	391 Carlantino (founder/genetic isolate) individuals, 981 Friuli Venezia Giulia (founder/genetic isolate) individuals, 31,225 European ancestry individuals, 2,048 African American individuals	7q36.1	KCNH2	rs12668582-C	0.322	5E-18		1.712	[1.32-2.1] unit increase	Affymetrix, Illumina [at least 19000000] (imputed)	N
1734	chr7	150657244	150657244	rs55851300	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q36.1	KCNH2	rs55851300-C	0.649176	9E-20	(312 ms)	0.0528816	[0.041-0.064] unit decrease	Affymetrix [10000000] (imputed)	N
1734	chr7	150657244	150657244	rs55851300	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q36.1	KCNH2	rs55851300-C	0.649176	8E-21	(326 ms)	0.0548269	[0.043-0.066] unit decrease	Affymetrix [10000000] (imputed)	N
1734	chr7	150657244	150657244	rs55851300	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q36.1	KCNH2	rs55851300-C	0.649176	7E-21	(316 ms)	0.055174	[0.044-0.067] unit decrease	Affymetrix [10000000] (imputed)	N
1734	chr7	150657244	150657244	rs55851300	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q36.1	KCNH2	rs55851300-C	0.649176	6E-21	(318 ms)	0.0548447	[0.043-0.066] unit decrease	Affymetrix [10000000] (imputed)	N
1734	chr7	150657244	150657244	rs55851300	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q36.1	KCNH2	rs55851300-C	0.649176	6E-16	(302 ms)	0.0470257	[0.035-0.059] unit decrease	Affymetrix [10000000] (imputed)	N
1734	chr7	150657244	150657244	rs55851300	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q36.1	KCNH2	rs55851300-C	0.649176	5E-17	(336 ms)	0.0492436	[0.038-0.061] unit decrease	Affymetrix [10000000] (imputed)	N
1734	chr7	150657244	150657244	rs55851300	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q36.1	KCNH2	rs55851300-C	0.649176	5E-15	(298 ms)	0.0459439	[0.034-0.058] unit decrease	Affymetrix [10000000] (imputed)	N
1734	chr7	150657244	150657244	rs55851300	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q36.1	KCNH2	rs55851300-C	0.649176	5E-14	(294 ms)	0.0437087	[0.032-0.055] unit decrease	Affymetrix [10000000] (imputed)	N
1734	chr7	150657244	150657244	rs55851300	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q36.1	KCNH2	rs55851300-C	0.649176	5E-12	(352 ms)	0.0410313	[0.029-0.053] unit decrease	Affymetrix [10000000] (imputed)	N
1734	chr7	150657244	150657244	rs55851300	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q36.1	KCNH2	rs55851300-C	0.649176	5E-11	(350 ms)	0.0390811	[0.027-0.051] unit decrease	Affymetrix [10000000] (imputed)	N
1734	chr7	150657244	150657244	rs55851300	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q36.1	KCNH2	rs55851300-C	0.649176	4E-20	(322 ms)	0.0538624	[0.042-0.065] unit decrease	Affymetrix [10000000] (imputed)	N
1734	chr7	150657244	150657244	rs55851300	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q36.1	KCNH2	rs55851300-C	0.649176	4E-17	(304 ms)	0.048942	[0.037-0.061] unit decrease	Affymetrix [10000000] (imputed)	N
1734	chr7	150657244	150657244	rs55851300	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q36.1	KCNH2	rs55851300-C	0.649176	4E-12	(290 ms)	0.0406633	[0.029-0.052] unit decrease	Affymetrix [10000000] (imputed)	N
1734	chr7	150657244	150657244	rs55851300	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q36.1	KCNH2	rs55851300-C	0.649176	3E-21	(320 ms)	0.0553653	[0.044-0.067] unit decrease	Affymetrix [10000000] (imputed)	N
1734	chr7	150657244	150657244	rs55851300	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q36.1	KCNH2	rs55851300-C	0.649176	3E-20	(324 ms)	0.0538984	[0.042-0.065] unit decrease	Affymetrix [10000000] (imputed)	N
1734	chr7	150657244	150657244	rs55851300	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q36.1	KCNH2	rs55851300-C	0.649176	3E-19	(308 ms)	0.0522863	[0.041-0.064] unit decrease	Affymetrix [10000000] (imputed)	N
1734	chr7	150657244	150657244	rs55851300	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q36.1	KCNH2	rs55851300-C	0.649176	3E-17	(332 ms)	0.0489328	[0.037-0.061] unit decrease	Affymetrix [10000000] (imputed)	N
1734	chr7	150657244	150657244	rs55851300	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q36.1	KCNH2	rs55851300-C	0.649176	3E-15	(340 ms)	0.0458566	[0.034-0.057] unit decrease	Affymetrix [10000000] (imputed)	N
1734	chr7	150657244	150657244	rs55851300	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q36.1	KCNH2	rs55851300-C	0.649176	3E-13	(292 ms)	0.0425364	[0.031-0.054] unit decrease	Affymetrix [10000000] (imputed)	N
1734	chr7	150657244	150657244	rs55851300	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q36.1	KCNH2	rs55851300-C	0.649176	2E-20	(314 ms)	0.0541959	[0.043-0.066] unit decrease	Affymetrix [10000000] (imputed)	N
1734	chr7	150657244	150657244	rs55851300	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q36.1	KCNH2	rs55851300-C	0.649176	2E-19	(328 ms)	0.052513	[0.041-0.064] unit decrease	Affymetrix [10000000] (imputed)	N
1734	chr7	150657244	150657244	rs55851300	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q36.1	KCNH2	rs55851300-C	0.649176	2E-18	(306 ms)	0.0508516	[0.039-0.062] unit decrease	Affymetrix [10000000] (imputed)	N
1734	chr7	150657244	150657244	rs55851300	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q36.1	KCNH2	rs55851300-C	0.649176	2E-17	(330 ms)	0.0492324	[0.038-0.061] unit decrease	Affymetrix [10000000] (imputed)	N
1734	chr7	150657244	150657244	rs55851300	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q36.1	KCNH2	rs55851300-C	0.649176	2E-15	(338 ms)	0.0463834	[0.035-0.058] unit decrease	Affymetrix [10000000] (imputed)	N
1734	chr7	150657244	150657244	rs55851300	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q36.1	KCNH2	rs55851300-C	0.649176	2E-15	(300 ms)	0.0459429	[0.034-0.058] unit decrease	Affymetrix [10000000] (imputed)	N
1734	chr7	150657244	150657244	rs55851300	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q36.1	KCNH2	rs55851300-C	0.649176	1E-19	(310 ms)	0.0526767	[0.041-0.064] unit decrease	Affymetrix [10000000] (imputed)	N
1734	chr7	150657244	150657244	rs55851300	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q36.1	KCNH2	rs55851300-C	0.649176	1E-17	(334 ms)	0.0498958	[0.038-0.062] unit decrease	Affymetrix [10000000] (imputed)	N
1734	chr7	150657244	150657244	rs55851300	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q36.1	KCNH2	rs55851300-C	0.649176	1E-14	(296 ms)	0.0447456	[0.033-0.056] unit decrease	Affymetrix [10000000] (imputed)	N
1734	chr7	150657244	150657244	rs55851300	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q36.1	KCNH2	rs55851300-C	0.649176	1E-11	(354 ms)	0.0402045	[0.029-0.052] unit decrease	Affymetrix [10000000] (imputed)	N
1734	chr7	150657244	150657244	rs55851300	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q36.1	KCNH2	rs55851300-C	0.649176	1E-10	(288 ms)	0.0376785	[0.026-0.049] unit decrease	Affymetrix [10000000] (imputed)	N
1734	chr7	150658677	150658678	rs35760656	29213071	Mendez-Giraldez R	2017-12-06	Sci Rep	GWAS of the electrocardiographic QT interval in Hispanics/Latinos generalizes previously identified loci and identifies population-specific signals.	QT interval	15,997 Hispanic/Latino individuals	NA	7q36.1	KCNH2	rs35760656-A	0.35	4E-13		1.7	[1.25-2.15] ms increase	Affymetrix, Illumina [up to 17586686] (imputed)	N
1734	chr7	150661408	150661409	rs7789146	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	7q36.1	KCNH2	rs7789146-G	0.821	2E-11		1.06	[1.04-1.08]	Illumina [34740186] (imputed)	N
1734	chr7	150661408	150661409	rs7789146	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	7q36.1	KCNH2	rs7789146-G	0.82	9E-11	(EA)	1.07	[1.05-1.09]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1734	chr7	150661408	150661409	rs7789146	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	7q36.1	KCNH2	rs7789146-G	0.8	7E-10		1.06	[1.04-1.08]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1734	chr7	150667209	150667210	rs3807375	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	QT interval	3,293 African American individuals, 13,698 Hispanic/Latino individuals, 127 Asian ancestry individuals, 230 Native American ancestry individuals	NA	7q36.1	NR	rs3807375-?	NR	1E-10		1.368543	[0.95-1.79] unit increase	Illumina [26659972] (imputed)	N
1734	chr7	150667209	150667210	rs3807375	24952745	Arking DE	2014-06-22	Nat Genet	Genetic association study of QT interval highlights role for calcium signaling pathways in myocardial repolarization.	QT interval	Up to 70,389 European ancestry individuals, up to 672 Orcadian individuals	Up to 33,316 European ancestry individuals	7q36.1	KCNH2	rs3807375-T	0.36	3E-33		1.22	[1.02-1.42] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1734	chr7	150667209	150667210	rs3807375	20062063	Holm H	2010-01-10	Nat Genet	Several common variants modulate heart rate, PR interval and QRS duration.	Electrocardiographic traits	Up to 12,670 European ancestry individuals	Up to 10,352 European ancestry individuals	7q36.1	KCNH2	rs3807375-T	0.35	5E-11	(QT interval)	11.95	[8.39-15.51] % s.d. increase	Illumina [306060]	N
1734	chr7	150668069	150668070	rs10236214	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	7q36.1		rs10236214-T	NR	2E-10		0.0153	[0.011-0.02] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1734	chr7	150669319	150669320	rs41313101	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	7q36.1	KCNH2	rs41313101-A	0.0256613313220145	2E-6		0.0082643	[NR] unit decrease	Affymetrix [> 30000000] (imputed)	N
1734	chr7	150669975	150669976	rs3778872	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	QT interval	3,293 African American individuals, 13,698 Hispanic/Latino individuals, 127 Asian ancestry individuals, 230 Native American ancestry individuals	NA	7q36.1	NR	rs3778872-?	NR	2E-11		1.954208	[1.39-2.52] unit increase	Illumina [26659972] (imputed)	N
1734	chr7	150669975	150669976	rs3778872	23166209	Smith JG	2012-11-19	Circ Cardiovasc Genet	Impact of ancestry and common genetic variants on QT interval in African Americans.	QT interval	13,105 African American individuals	NA	7q36.1	KCNH2	rs3778872-C	0.64	3E-6		1.77	[1.04-2.50] unit decrease	Affymetrix, Illumina [2800000] (imputed)	N
1734	chr7	150679042	150679043	rs6953274	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	7q36.1	NR	rs6953274-G	0.626727	3E-11		0.0696636	[0.05-0.089] unit increase	Affymetrix [21375087] (imputed)	N
1734	chr7	150680976	150680977	rs2373962	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	7q36.1		rs2373962-C	NR	9E-25		0.0197	[0.016-0.023] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1734	chr7	150680976	150680977	rs2373962	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	7q36.1		rs2373962-C	NR	3E-26		0.016	[0.013-0.019] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1734	chr7	150680976	150680977	rs2373962	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	7q36.1	NR	rs2373962-C	0.628449	4E-15		0.0553494	[0.042-0.069] unit increase	Affymetrix [17914406] (imputed)	N
1734	chr7	150683082	150683083	rs10247107	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	7q36.1	intergenic	rs10247107-A	0.6044	8E-15		0.0174	[0.013-0.022] unit decrease	Affymetrix [18391927] (imputed)	N
1734	chr7	150684345	150684346	rs6946091	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	7q36.1	NR	rs6946091-?	NR	2E-18		0.20015	[0.16-0.24] unit increase	Affymetrix [7794483] (imputed)	N
1734	chr7	150684345	150684346	rs6946091	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	7q36.1	NR	rs6946091-?	NR	2E-15	(male)	0.28641	[0.22-0.36] unit increase	Affymetrix [7794483] (imputed)	N
1734	chr7	150690175	150690176	rs3918226	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	20,917 European ancestry cases, 440,906 European ancestry controls, 14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	7q36.1		rs3918226-T	NR	3E-10		0.1348	[0.093-0.177] unit increase	Affymetrix, Illumina [25841367] (imputed)	N
1734	chr7	150690175	150690176	rs3918226	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls, 22,356 East Asian ancestry cases, 156,370 East Asian ancestry controls	NA	7q36.1		rs3918226-T	NR	7E-29		0.1665	[0.14-0.2] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1734	chr7	150690175	150690176	rs3918226	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls, 49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	7q36.1		rs3918226-T	NR	4E-26		0.1613	[0.13-0.19] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1734	chr7	150690175	150690176	rs3918226	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls, 20,367 East Asian ancestry cases, 158,359 East Asian ancestry controls	NA	7q36.1		rs3918226-T	NR	8E-21		0.1464	[0.12-0.18] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1734	chr7	150690175	150690176	rs3918226	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	7q36.1		rs3918226-T	NR	2E-37		0.1453	[0.12-0.17] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1734	chr7	150690175	150690176	rs3918226	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls, 33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	7q36.1		rs3918226-T	NR	7E-11		0.0685	[0.048-0.089] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1734	chr7	150690175	150690176	rs3918226	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	7q36.1	NOS3	rs3918226-T	0.068905	4E-13		1.12	[1.09-1.16]	NR [8126035] (imputed)	N
1734	chr7	150690175	150690176	rs3918226	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 2,680 cases, 380,970 European ancestry controls, 73,242 controls	NA	7q36.1	NOS3	rs3918226-T	0.077561	4E-9		1.13	[1.08-1.17]	NR [10903881] (imputed)	N
1734	chr7	150690175	150690176	rs3918226	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	7q36.1	NOS3	rs3918226-T	0.081	2E-27		0.0386	[0.032-0.046] unit decrease	Affymetrix [18391927] (imputed)	N
1734	chr7	150690175	150690176	rs3918226	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	7q36.1	NOS3	rs3918226-T	0.080762	6E-10		0.02590168	[0.018-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
1734	chr7	150690175	150690176	rs3918226	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	7q36.1	NOS3	rs3918226-T	0.080761	1E-10		0.026705137	[0.019-0.035] unit increase	Affymetrix [93095623] (imputed)	N
1734	chr7	150690175	150690176	rs3918226	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q36.1	NR	rs3918226-C	0.921796	9E-14				Affymetrix, Illumina [17210439] (imputed)	N
1734	chr7	150690175	150690176	rs3918226	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	7q36.1	NR	rs3918226-C	0.91894	6E-16		0.028873	[0.022-0.036] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
1734	chr7	150690175	150690176	rs3918226	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	7q36.1	NOS3	rs3918226-T	0.084	4E-7		0.0028	[0.0016-0.004] unit decrease	Affymetrix [NR] (imputed)	N
1734	chr7	150690175	150690176	rs3918226	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	7q36.1	NR	rs3918226-C	0.9224	6E-10		1.0728463	[1.05-1.1]	Affymetrix [15688218] (imputed)	N
1734	chr7	150690175	150690176	rs3918226	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	7q36.1	NOS3	rs3918226-C	0.918956	9E-12		0.039755	[0.028-0.051] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
1734	chr7	150690175	150690176	rs3918226	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls	NA	7q36.1	NOS3	rs3918226-T	0.0763907	7E-29		0.1665414	[0.14-0.2] unit increase	Affymetrix [7288503] (imputed)	N
1734	chr7	150690175	150690176	rs3918226	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls	NA	7q36.1	NOS3	rs3918226-T	0.0761387	4E-26		0.16126491	[0.13-0.19] unit increase	Affymetrix [7288503] (imputed)	N
1734	chr7	150690175	150690176	rs3918226	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls	NA	7q36.1	NOS3	rs3918226-T	0.0761934	8E-21		0.14636576	[0.12-0.18] unit increase	Affymetrix [7288503] (imputed)	N
1734	chr7	150690175	150690176	rs3918226	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	7q36.1	NOS3	rs3918226-T	0.0773003	2E-37		0.145321	[0.12-0.17] unit increase	Affymetrix [7288503] (imputed)	N
1734	chr7	150690175	150690176	rs3918226	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls	NA	7q36.1	NOS3	rs3918226-T	0.0779394	7E-11		0.06852254	[0.048-0.089] unit increase	Affymetrix [7288503] (imputed)	N
1734	chr7	150690175	150690176	rs3918226	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	7q36.1		rs3918226-?	NR	8E-25				NR [~ 8900000] (imputed)	N
1734	chr7	150690175	150690176	rs3918226	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7q36.1		rs3918226-?	NR	1E-32				NR [~ 8900000] (imputed)	N
1734	chr7	150690175	150690176	rs3918226	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	7q36.1		rs3918226-?	NR	4E-14				NR [~ 8900000] (imputed)	N
1734	chr7	150690175	150690176	rs3918226	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	7q36.1		rs3918226-?	NR	2E-49				NR [~ 8900000] (imputed)	N
1734	chr7	150690175	150690176	rs3918226	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	7q36.1	NOS3	rs3918226-T	0.0776	2E-13		0.5088	[0.37-0.64] mmHg increase	Affymetrix [NR] (imputed)	N
1734	chr7	150690175	150690176	rs3918226	30104761	Zhou W	2018-08-13	Nat Genet	Efficiently controlling for case-control imbalance and sample relatedness in large-scale genetic association studies.	Coronary artery disease	31,355 European ancestry cases, 377,103 European ancestry controls	NA	7q36.1	NOS3	rs3918226-T	0.081	2E-10				Affymetrix [28000000] (imputed)	N
1734	chr7	150690175	150690176	rs3918226	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption interaction (2df test)	63,608 European ancestry drinkers, 10,193 African American or Afro-Caribbean heavy drinkers,  2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,494 European ancestry non-drinkers, 11,224 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,002 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,452 Hispanic drinkers, 43,316 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,945 Asian ancestry non-drinkers, 6,925 Hispanic non-drinkers	7q36.1	NOS3	rs3918226-T	0.08	2E-14	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1734	chr7	150690175	150690176	rs3918226	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption interaction (2df test)	63,607 European ancestry drinkers, 10,193 African American or Afro-Caribbean drinkers, 2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,492 European ancestry non-drinkers, 11,223 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,058 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	7q36.1	NOS3	rs3918226-T	0.08	4E-31	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1734	chr7	150690175	150690176	rs3918226	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure (cigarette smoking interaction)	80,552 European ancestry individuals, 27,118 African individuals, 13,438 Asian individuals, 8,805 Hispanic individuals	305,513 European ancestry individuals, 7,786 African individuals, 148,932 Asian individuals, 13,533 Hispanic individuals, 4,414 Brazilian individuals	7q36.1	NOS3	rs3918226-?	NR	2E-12				Affymetrix, Illumina [18800000] (imputed)	N
1734	chr7	150690175	150690176	rs3918226	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure (cigarette smoking interaction)	80,552 European ancestry individuals, 27,118 African individuals, 13,438 Asian individuals, 8,805 Hispanic individuals	305,513 European ancestry individuals, 7,786 African individuals, 148,932 Asian individuals, 13,533 Hispanic individuals, 4,414 Brazilian individuals	7q36.1	NOS3	rs3918226-?		4E-33				Affymetrix, Illumina [18800000] (imputed)	N
1734	chr7	150690175	150690176	rs3918226	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	7q36.1	NOS3	rs3918226-T	0.0732	1E-20		0.1071	[0.085-0.13] unit increase	Affymetrix [at least 7947838] (imputed)	N
1734	chr7	150690175	150690176	rs3918226	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	7q36.1	NOS3	rs3918226-T	0.0724	3E-21		0.1219	[0.097-0.147] unit increase	NR [8041861] (imputed)	N
1734	chr7	150690175	150690176	rs3918226	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	7q36.1	NOS3	rs3918226-T	0.072	3E-21		0.122	[0.097-0.147] unit increase	Affymetrix [7947838] (imputed)	N
1734	chr7	150690175	150690176	rs3918226	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Diastolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	7q36.1	NOS3	rs3918226-T	0.078	2E-13	(EA, initial)	0.667	[0.49-0.85] unit increase	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
1734	chr7	150690175	150690176	rs3918226	28714975	Nelson CP	2017-07-17	Nat Genet	Association analyses based on false discovery rate implicate new loci for coronary artery disease.	Coronary artery disease (myocardial infarction, percutaneous transluminal coronary angioplasty, coronary artery bypass grafting, angina or chromic ischemic heart disease)	18,467 European and unknown ancestry cases, 45,264 European and unknown ancestry controls	57,347 European and unknown ancestry cases, 219,521 European and unknown ancestry controls	7q36.1	NOS3	rs3918226-T	0.071	2E-12		1.13	[1.09-1.17]	Affymetrix [9149595] (imputed)	N
1734	chr7	150690175	150690176	rs3918226	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	7q36.1	NOS3	rs3918226-C		2E-9		0.474	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1734	chr7	150690175	150690176	rs3918226	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	7q36.1	NOS3	rs3918226-C		4E-23		0.474	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1734	chr7	150690175	150690176	rs3918226	26343387	Nikpay M	2015-09-07	Nat Genet	A comprehensive 1,000 Genomes-based genome-wide association meta-analysis of coronary artery disease.	Coronary artery disease	42,096 European ancestry cases, 361 African American cases, 758 Hispanic American cases, 12,658 South Asian ancestry cases, 1,802 Lebanese ancestry cases, 3,614 East Asian ancestry cases, 99,121 European ancestry controls, 2,778 African American controls, 3,337 Hispanic American controls, 12,899 South Asian ancestry controls, 466 Lebanese ancestry controls, 7,709 East Asian ancestry controls	NA	7q36.1	NOS3	rs3918226-T	0.06	2E-9	(additive model)	1.14	[1.09-1.19]	Affymetrix, Illumina [8600000] (imputed)	N
1734	chr7	150696110	150696111	rs1799983	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Periventricular white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	7q36.1	NOS3	rs1799983-T	0.3201	4E-8		0.0373	[0.024-0.051] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1734	chr7	150696110	150696111	rs1799983	30383316	Malik R	2018-11-01	Ann Neurol	Genome-Wide Meta-analysis identifies three novel loci associated with stroke.	Stroke	45,570 European ancestry cases, 26,577 cases, 775,530 European ancestry controls, 48,339 controls	NA	7q36.1	NOS3	rs1799983-T	0.32	2E-8	(EA)	1.05	[1.04-1.07]	NR [NR]	N
1734	chr7	150704842	150704843	rs891511	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	7q36.1		rs891511-A	NR	4E-19		0.0178	[0.014-0.022] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1734	chr7	150704842	150704843	rs891511	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	7q36.1		rs891511-A	NR	3E-22		0.0196	[0.016-0.024] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
1734	chr7	150704842	150704843	rs891511	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	7q36.1		rs891511-A	NR	1E-20		0.0195	[0.015-0.024] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1734	chr7	150704842	150704843	rs891511	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Diastolic blood pressure	11,380 African American individuals, 21,549 Hispanic/Latino individuals, 1,086 Asian ancestry individuals, 636 Native American ancestry individuals, 782 individuals	NA	7q36.1	NR	rs891511-?	NR	1E-6		0.470031	[0.28-0.66] unit decrease	Illumina [32101933] (imputed)	N
1734	chr7	150704842	150704843	rs891511	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Systolic blood pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	154,543 European ancestry individuals, 26,183 South Asian ancestry individuals	7q36.1	NOS3	rs891511-A	0.373	5E-12		0.35	[0.25-0.45] unit decrease	Illumina [247039]	N
1734	chr7	150704842	150704843	rs891511	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Mean arterial pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	NA	7q36.1	NOS3	rs891511-A	0.37290040772726	2E-8		0.27504084	[0.18-0.37] unit decrease	Illumina [247039]	N
1734	chr7	150704842	150704843	rs891511	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Hypertension	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	154,543 European ancestry individuals, 26,183 South Asian ancestry individuals	7q36.1	NOS3	rs891511-A	0.37	3E-9		5.9536796	z score decrease	Illumina [247039]	N
1734	chr7	150704842	150704843	rs891511	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Diastolic blood pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	154,543 European ancestry individuals, 26,183 South Asian ancestry individuals	7q36.1	NOS3	rs891511-A	0.373	2E-16		0.26	[0.2-0.32] unit decrease	Illumina [247039]	N
1734	chr7	150718687	150718688	rs74320456	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		ATG9B	rs74320456-?	NR	4E-12	(male)	2.69705	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1735	chr7	150752607	150752608	rs2069456	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	7q36.1	CDK5	rs2069456-G	0.226938	5E-13		0.019357411	[0.014-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1735	chr7	150755172	150755173	rs2069443	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	7q36.1	CDK5	rs2069443-G	0.254805	3E-23		0.025022577	[0.02-0.03] unit increase	Affymetrix [93095623] (imputed)	N
1735	chr7	150755172	150755173	rs2069443	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	7q36.1	CDK5	rs2069443-G	0.254779	8E-12		0.0184586	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1735	chr7	150755172	150755173	rs2069443	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	7q36.1	CDK5	rs2069443-G	0.25481	4E-13		0.018395774	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1735	chr7	150755172	150755173	rs2069443	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	7q36.1	CDK5	rs2069443-G	0.254807	3E-10		0.015998673	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1735	chr7	150755172	150755173	rs2069443	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	7q36.1		rs2069443-?	NR	1E-24				NR [~ 8900000] (imputed)	N
1735	chr7	150755204	150755205	rs2069442	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	7q36.1	CDK5	rs2069442-C	0.2544	5E-14		0.019230783	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1735	chr7	150755204	150755205	rs2069442	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	7q36.1	NR	rs2069442-C	0.255559	3E-18		0.018903	[0.015-0.023] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1735	chr7	150755204	150755205	rs2069442	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	7q36.1	SLC4A2	rs2069442-G	0.744877	4E-20		0.0192471	[0.015-0.023] unit increase	NR [13737936] (imputed)	N
1735	chr7	150755204	150755205	rs2069442	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	7q36.1		rs2069442-?	NR	5E-21		0.0217593	[0.017-0.026] unit increase	Affymetrix [20259828] (imputed)	N
1735	chr7	150759219	150759229	rs3217354	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	7q36.1		rs3217354-C	NR	2E-8		0.0113	[0.0074-0.0152] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
1735	chr7	150759219	150759229	rs3217354	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	7q36.1	SLC4A2	rs3217354-C	0.576878	2E-9		0.013435505	[0.0091-0.0178] unit increase	Affymetrix [93095623] (imputed)	N
1735	chr7	150759219	150759219	rs759544745	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	7q36.1		rs759544745-CGTGTGTGAGT	0.424	2E-10		0.07	[-0.09--0.05] % decrease	Affymetrix [NR] (imputed)	N
1735	chr7	150759219	150759219	rs759544745	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	7q36.1	NR	rs759544745-D	0.576727	1E-11		0.013752	[0.0098-0.0177] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
1735	chr7	150761313	150761314	rs2303929	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	7q36.1		rs2303929-A	0.2347	4E-8	(conditional-joint)	0.0091	[0.0058-0.0124] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1735	chr7	150761879	150761880	rs2303931	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q36.1	NR	rs2303931-A	0.285096	3E-20				Affymetrix, Illumina [24246363] (imputed)	N
1735	chr7	150761879	150761880	rs2303931	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q36.1	NR	rs2303931-A	0.284012	9E-11				Affymetrix, Illumina [20825802] (imputed)	N
1735	chr7	150761879	150761880	rs2303931	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	7q36.1		rs2303931-?	NR	9E-21				NR [~ 8900000] (imputed)	N
1735	chr7	150764387	150764388	rs34812229	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	7q36.1		rs34812229-T	NR	8E-13		0.0161	[0.012-0.02] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
1735	chr7	150787887	150787888	rs60987133	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	7q36.1		rs60987133-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1735	chr7	150794603	150794604	rs755081222	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	7q36.1	NR	rs755081222-C	0.333092	5E-9		0.0426245	[0.028-0.057] unit increase	Affymetrix [17914406] (imputed)	N
1735	chr7	150795608	150795609	rs7385751	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	7q36.1		rs7385751-G	0.24	2E-18		8.75	z score increase	Affymetrix [9061022] (imputed)	N
1735	chr7	150795608	150795609	rs7385751	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	7q36.1		rs7385751-G	0.24	3E-14		7.6	z score increase	Affymetrix [9061022] (imputed)	N
1735	chr7	150795608	150795609	rs7385751	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	7q36.1	NR	rs7385751-G	0.2696	1E-15				NR [9056863] (imputed)	N
1735	chr7	150798979	150798980	rs749319	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	7q36.1		rs749319-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1735	chr7	150800738	150800739	rs10273337	34437536	Akhtari FS	2021-08-26	PLoS Genet	High-throughput screening and genome-wide analyses of 44 anticancer drugs in the 1000 Genomes cell lines reveals an association of the NQO1 gene with the response of multiple anticancer drugs.	Response to vandetanib	680 lymphoblastoid cell lines from Han Chinese ancestry, Japanese ancestry, Kenyan ancestry, Mexican ancestry, Tuscan ancestry, Yoruban ancestry, British ancestry, Columbian ancestry individuals	NA	7q36.1		rs10273337-?	NR	9E-7				Illumina [1510701]	N
1735	chr7	150805271	150805272	rs10952302	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	7q36.1		rs10952302-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1735	chr7	150807002	150807003	rs62490313	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	7q36.1		rs62490313-T	0.34	5E-10		6.23	z score increase	Affymetrix [9061022] (imputed)	N
1735	chr7	150809279	150809280	rs4725392	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	7q36.1	NR	rs4725392-T	0.3151	2E-9				NR [9056863] (imputed)	N
1735	chr7	150823227	150823230	rs201287033	26926045	Adhikari K	2016-03-01	Nat Commun	A genome-wide association scan in admixed Latin Americans identifies loci influencing facial and scalp hair features.	Eyebrow thickness	2,922 Latin American individuals	NA	7q36.1	ABCB8, ABCF2, AGAP3, AOC1, ASB10, ASIC3, ATG9B, CDK5, CHPF2, FASTK, GBX1, KCNH2, MIR671, NOS3, NUB1, SLC4A2, SMARCD3, TMUB1, WDR86, WDR86-AS1	rs201287033-?	NR	7E-6				Illumina [9143600] (imputed)	N
1735	chr7	150825805	150825806	rs75750968	34158603	Liu X	2021-06-22	Pharmacogenomics J	New genetic variants associated with major adverse cardiovascular events in patients with acute coronary syndromes and treated with clopidogrel and aspirin.	Major adverse cardiovascular events in response to aspirin and clopidogrel treatment	51 Han Chinese ancestry cases, 117 Han Chinese ancestry controls	123 Han Chinese ancestry cases, 1,580 Han Chinese ancestry controls	7q36.1		rs75750968-A	0.021	5E-6		3.21	[1.83-5.66]	NR [127834]	N
1735	chr7	150825838	150825839	rs7808252	27629369	Gao J	2016-09-15	Neuropsychopharmacology	Genome-Wide Association Study of Loneliness Demonstrates a Role for Common Variation.	Loneliness	2,075 European ancestry cases, 3,875 European ancestry controls, 427 African American cases, 398 African American controls, 294 Hispanic cases, 327 Hispanic controls, 57 cases, 73 controls	NA	7q36.1	AGAP3	rs7808252-?	NR	6E-6	(EA)	0.0503	[0.029-0.072] unit increase	Illumina [7176022] (imputed)	N
1735	chr7	150854167	150854168	rs79549409	34593835	Takahashi Y	2021-09-30	Sci Rep	A genome-wide association study identifies a novel candidate locus at the DLGAP1 gene with susceptibility to resistant hypertension in the Japanese population.	Resistant hypertension	2,705 Japanese ancestry cases, 21,296 Japanese ancestry controls	NA	7q36.1		rs79549409-A	0.136	1E-6		0.81	[0.74-0.88]	Illumina [7199488] (imputed)	N
1736	chr7	150870625	150870626	rs12533831	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	7q36.1	NR	rs12533831-?	NR	1E-6		0.0505	[0.03-0.071] unit increase	Illumina [at least 560000] (imputed)	N
1736	chr7	150881887	150881888	rs35679068	32238385	Nakayama A	2020-04-01	Ann Rheum Dis	Subtype-specific gout susceptibility loci and enrichment of selection pressure on ABCG2 and ALDH2 identified by subtype genome-wide meta-analyses of clinically defined gout patients.	Renal underexcretion gout	654 Japanese ancestry male cases, 4,554 Japanese ancestry male controls	NA	7q36.1	ASB10	rs35679068-T	0.11	8E-7		1.52	[1.29-1.80]	Illumina [7206774] (imputed)	N
1736	chr7	150889774	150889775	rs2243861	33816493	Cai R	2021-03-18	Front Cell Dev Biol	Genome-Wide Association Identifies Risk Pathways for SAPHO Syndrome.	SAPHO syndrome	49 Chinese ancestry cases, 121 Chinese ancestry controls	NA	7q36.1	IQCA1L	rs2243861-?	NR	4E-9		0.06295	NR	Illumina [802276]	N
1736	chr7	150900061	150900062	rs61733346	31219150	Ekenberg C	2019-06-13	J Infect Dis	Single nucleotide polymorphisms in HLA alleles are associated with HIV-1 viral load in demographically diverse, ART-naive participants from the START trial.	Pre-treatment viral load in HIV-1 infection	1,398 European ancestry individuals, 572 Black individuals, 418 Hispanic individuals, 13 Asian ancestry individuals, 39 individuals	NA	7q36.1	ABCF2	rs61733346-G	0.093	4E-17		0.33	[0.26-0.41] unit decrease	Affymetrix [339439]	N
1736	chr7	150903921	150903922	rs62489652	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	7q36.1	LARS2, LIMD1, SACM1L, SLC6A20	rs62489652-?		5E-8				NR [7428630] (imputed)	N
1736	chr7	150905443	150905444	rs2608291	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	7q36.1		rs2608291-T	0.212615	7E-9		0.0142237	[0.0094-0.019] unit increase	Illumina [13479295] (imputed)	N
1736	chr7	150905443	150905444	rs2608291	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	7q36.1	ABCF2	rs2608291-?	NR	1E-9		0.021252604	[0.014-0.028] unit increase	Illumina [27896057] (imputed)	N
1736	chr7	150906452	150906453	rs73169642	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL5RA	5,366 Icelandic ancestry individuals	NA	7q36.1		rs73169642-C	0.1584	9E-14		0.190603	[0.14-0.24] unit increase	Illumina [7506463] (imputed)	N
1736	chr7	150915070	150915071	rs1122979	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	7q36.1	ABCF2, SMARCD3	rs1122979-G	0.875396395193591	6E-10	(IGP45)	0.3046	[0.21-0.4] unit increase	Illumina [~ 2500000] (imputed)	N
1736	chr7	150915070	150915071	rs1122979	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	7q36.1	ABCF2, SMARCD3	rs1122979-G	0.875342207034728	2E-9	(IGP5)	0.2945	[0.2-0.39] unit increase	Illumina [~ 2500000] (imputed)	N
1736	chr7	150915070	150915071	rs1122979	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	7q36.1	ABCF2, SMARCD3	rs1122979-G	0.875182808816914	2E-10	(IGP2)	0.3134	[0.22-0.41] unit increase	Illumina [~ 2500000] (imputed)	N
1736	chr7	150915070	150915071	rs1122979	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	7q36.1	ABCF2, SMARCD3	rs1122979-G	0.874968858612975	7E-6	(IGP59)	0.2213	[0.12-0.32] unit decrease	Illumina [~ 2500000] (imputed)	N
1736	chr7	150915070	150915071	rs1122979	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	7q36.1	ABCF2, SMARCD3	rs1122979-G	0.874862054831461	1E-9	(IGP42)	0.2982	[0.2-0.39] unit increase	Illumina [~ 2500000] (imputed)	N
1736	chr7	150919828	150919829	rs7812088	32128391	Klaric L	2020-02-19	Sci Adv	Glycosylation of immunoglobulin G is regulated by a large network of genes pleiotropic with inflammatory diseases.	IgG N-glycosylation phenotypes (multivariate analysis)	8,090 European ancestry individuals	2,388 European ancestry individuals		ABCF2	rs7812088-A	0.119	2E-22		0.25	[NR] unit decrease	Illumina [up to 741151] (imputed)	N
1736	chr7	150919828	150919829	rs7812088	22504420	Estrada K	2012-04-15	Nat Genet	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Femoral neck bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals		ABCF2	rs7812088-A	0.13	7E-9		0.05	[NR] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1736	chr7	150930362	150930363	rs73169668	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	7q36.1	NR	rs73169668-T	NR	2E-10		0.025	[0.017-0.033] unit increase	Affymetrix [9000000] (imputed)	N
1736	chr7	150930362	150930363	rs73169668	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	7q36.1	NR	rs73169668-T	NR	1E-10		0.0242	[0.017-0.031] unit decrease	Affymetrix [9000000] (imputed)	N
1736	chr7	150930362	150930363	rs73169668	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	7q36.1	NR	rs73169668-T	NR	5E-18		0.034	[0.026-0.042] unit increase	Affymetrix [9000000] (imputed)	N
1736	chr7	150933043	150933044	rs10233479	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL5RA	5,365 Icelandic ancestry individuals	NA	7q36.1		rs10233479-T	0.1545	3E-19		0.229958	[0.18-0.28] unit increase	Illumina [7506463] (imputed)	N
1736	chr7	150934161	150934162	rs2446065	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7q36.1		rs2446065-?	NR	2E-15				NR [~ 8900000] (imputed)	N
1736	chr7	150937075	150937076	rs79419269	28025584	da Silva Filho MI	2016-12-27	Leukemia	Genome-wide association study of immunoglobulin light chain amyloidosis in three patient cohorts: comparison with myeloma.	Immunoglobulin light chain (AL) amyloidosis	1,229 cases, 7,526 controls	NA	7q36.1	SMARCD3	rs79419269-C	0.12	5E-8		1.41	[1.25-1.60]	Affymetrix, Illumina [NR] (imputed)	N
1736	chr7	150950939	150950940	rs7781265	33875642	Duran-Lozano L	2021-04-19	Blood Cancer J	Germline variants at SOHLH2 influence multiple myeloma risk.	Multiple myeloma	4,376 European ancestry cases, 345,887 European ancestry controls	5,598 European ancestry cases, 15,261 European ancestry controls	7q36.1	SMARCD3	rs7781265-A	0.09	3E-10		1.22	[NR]	Illumina [33000000] (imputed)	N
1736	chr7	150950939	150950940	rs7781265	27363682	Mitchell JS	2016-07-01	Nat Commun	Genome-wide association study identifies multiple susceptibility loci for multiple myeloma.	Multiple myeloma	7,319 European ancestry cases, 234,385 European ancestry controls	2,547 European ancestry cases, 4,803 European ancestry controls	7q36.1	SMARCD3, CHPF2	rs7781265-T	0.125	1E-8		1.19	[NR]	Illumina [at least 7182761] (imputed)	N
1736	chr7	150951818	150951819	rs3789823	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	7q36.1		rs3789823-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1736	chr7	150952769	150952770	rs61591132	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	7q36.1	SMARCD3	rs61591132-A	0.112061	7E-13		0.025213994	[0.018-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
1736	chr7	150952769	150952770	rs61591132	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	7q36.1	SMARCD3	rs61591132-A	0.112064	2E-14		0.026923373	[0.02-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
1736	chr7	150953204	150953205	rs73169678	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	7q36.1	SMARCD3	rs73169678-A	0.11136	5E-16		0.028498067	[0.022-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
1736	chr7	150953204	150953205	rs73169678	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	7q36.1		rs73169678-?	NR	3E-15				NR [~ 8900000] (imputed)	N
1736	chr7	150953204	150953205	rs73169678	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	7q36.1	NR	rs73169678-A	0.1142	1E-10	(European)	0.0631	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
1736	chr7	150953204	150953205	rs73169678	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	7q36.1	NR	rs73169678-A	0.1117	1E-11		0.0619	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
1736	chr7	150954183	150954184	rs2530459	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	7q36.1	SMARCD3	rs2530459-T	0.434707	6E-15		0.0143955	[0.011-0.018] unit increase	NR [13737936] (imputed)	N
1736	chr7	150966436	150966437	rs6977470	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	7q36.1	NR	rs6977470-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
1737	chr7	151029603	151029604	rs34164796	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body fat mass	3,399 whole genome sequenced individuals, 11,802 European ancestry individuals	10,670 European ancestry individuals	7q36.1	NUB1	rs34164796-T	0.7896	2E-7		0.0795	[0.05-0.109] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1737	chr7	151042282	151042283	rs12703118	29738550	de Oliveira Otto MC	2018-05-08	PLoS One	Genome-wide association meta-analysis of circulating odd-numbered chain saturated fatty acids: Results from the CHARGE Consortium.	Circulating odd-numbered chain saturated fatty acid levels (C19:0)	1,910 European ancestry individuals	NA	7q36.1	NR	rs12703118-?	NR	4E-7		0.0393	[0.024-0.055] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1737	chr7	151050613	151050614	rs13226693	29738550	de Oliveira Otto MC	2018-05-08	PLoS One	Genome-wide association meta-analysis of circulating odd-numbered chain saturated fatty acids: Results from the CHARGE Consortium.	Circulating odd-numbered chain saturated fatty acid levels (C19:0)	1,910 European ancestry individuals	NA	7q36.1	NR	rs13226693-?	NR	2E-7		0.0363	[0.023-0.05] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1737	chr7	151054579	151054580	rs13221923	29738550	de Oliveira Otto MC	2018-05-08	PLoS One	Genome-wide association meta-analysis of circulating odd-numbered chain saturated fatty acids: Results from the CHARGE Consortium.	Circulating odd-numbered chain saturated fatty acid levels (C19:0)	1,910 European ancestry individuals	NA	7q36.1	NR	rs13221923-?	NR	2E-7		0.0359	[0.022-0.049] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1737	chr7	151055557	151055558	rs387859	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7q36.1		rs387859-?	NR	2E-13				NR [~ 8900000] (imputed)	N
1737	chr7	151057396	151057397	rs3217033	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	7q36.1		rs3217033-A	NR	4E-11		0.0139	[0.0098-0.018] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
1737	chr7	151057684	151057685	rs1468510	29738550	de Oliveira Otto MC	2018-05-08	PLoS One	Genome-wide association meta-analysis of circulating odd-numbered chain saturated fatty acids: Results from the CHARGE Consortium.	Circulating odd-numbered chain saturated fatty acid levels (C19:0)	1,910 European ancestry individuals	NA	7q36.1	NR	rs1468510-?	NR	2E-7		0.0358	[0.022-0.049] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1737	chr7	151074742	151074743	rs77300744	28282560	Pott J	2017-02-24	Atherosclerosis	Genome-wide meta-analysis identifies novel loci of plaque burden in carotid artery.	Carotid plaque burden	7,189 European ancestry individuals	NA	7q36.1	NUB1	rs77300744-A	NR	5E-6		0.44842723	[0.26-0.64] unit increase	Affymetrix [9576485] (imputed)	N
1737	chr7	151099227	151099228	rs10235381	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7q36.1	NR	rs10235381-C	0.0122	5E-9	(TXNL1)	0.06755	NR unit increase	Illumina [1671387] (imputed)	N
1737	chr7	151117681	151117682	rs7781279	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	7q36.1	WDR86-AS1	rs7781279-T	0.755674	6E-15		0.0165614	[0.012-0.021] unit increase	NR [13737936] (imputed)	N
1737	chr7	151118485	151118486	rs57687654	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris color (a* coordinate)	329 South Asian ancestry individuals		7q36.1	intergenic	rs57687654-A	0.232452	2E-6		0.475295	[0.28-0.67] unit increase	Illumina [640625] (imputed)	N
1737	chr7	151120797	151120798	rs28665356	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	7q36.1		rs28665356-?	NR	5E-10				NR [~ 8900000] (imputed)	N
1737	chr7	151120797	151120798	rs28665356	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	7q36.1		rs28665356-?	NR	1E-12		0.0157725	[0.011-0.02] unit increase	Affymetrix [20259828] (imputed)	N
1737	chr7	151120947	151120948	rs13232179	21347282	Lettre G	2011-02-10	PLoS Genet	Genome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project.	Coronary heart disease	260 African American cases, 5,053 African American controls	621 African American cases, 1,629 African American controls	7q36.1	intergenic	rs13232179-A	0.11	1E-6		1.67	[1.36-2.06]	Affymetrix [~ 2740000] (imputed)	N
1737	chr7	151122698	151122699	rs58287690	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	7q36.1	WDR86, CRYGN	rs58287690-?		1E-20				Affymetrix, Illumina [NR] (imputed)	N
1738	chr7	151147121	151147122	rs7784512	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	7q36.1	RHEB	rs7784512-?	NR	8E-6	(TAG 54:9)	0.19844808	[0.11-0.29] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1738	chr7	151162471	151162472	rs17713451	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-4 levels	8,124 Finnish ancestry individuals	NA	7q36.1	NR	rs17713451-G		5E-7		0.1274	[0.078-0.177] SD units decrease	NR [10700000] (imputed)	N
1738	chr7	151184919	151184920	rs17635967	29367611	Gao B	2018-01-24	Sci Rep	Genome-wide association study of paclitaxel and carboplatin disposition in women with epithelial ovarian cancer.	Carboplatin disposition in epthelial ovarian cancer	42 European ancestry cases, 14 Asian ancestry cases	NA	7q36.1	RHEB	rs17635967-?	NR	6E-6	(adjusted for dose, GFR & AST)	1.49	unit decrease (EA)	Illumina [610255]	N
1738	chr7	151245974	151245975	rs56167574	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	LDL cholesterol levels x smoking (ever vs never smokers) interaction (2df test)	11,649 African ancestry ever smoker individuals, 3,999 Asian ancestry ever smoker individuals, 45,506 European ancestry ever smoker individuals, 2,554 Hispanic ever smoker individuals, 11,700 African ancestry never smoker individuals, 9,118 Asian ancestry never smoker individuals, 37,016 European ancestry never smoker individuals, 4,095 Hispanic never smoker individuals	1,693 African ancestry ever smoker individuals, 20,368 Asian ancestry ever smoker individuals, 65,806 European ancestry ever smoker individuals, 6,857 Hispanic ever smoker individuals, 2,025 African ancestry never smoker individuals, 27,981 Asian ancestry never smoker individuals, 51,361 European ancestry never smoker individuals, 10,139 Hispanic never smoker individuals	7q36.1		rs56167574-A	0.12	8E-8	(African)	6.1	[3.94-8.26] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1738	chr7	151245974	151245975	rs56167574	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	LDL cholesterol levels x smoking (ever vs never smokers) interaction (2df test)	11,649 African ancestry ever smoker individuals, 3,999 Asian ancestry ever smoker individuals, 45,506 European ancestry ever smoker individuals, 2,554 Hispanic ever smoker individuals, 11,700 African ancestry never smoker individuals, 9,118 Asian ancestry never smoker individuals, 37,016 European ancestry never smoker individuals, 4,095 Hispanic never smoker individuals	1,693 African ancestry ever smoker individuals, 20,368 Asian ancestry ever smoker individuals, 65,806 European ancestry ever smoker individuals, 6,857 Hispanic ever smoker individuals, 2,025 African ancestry never smoker individuals, 27,981 Asian ancestry never smoker individuals, 51,361 European ancestry never smoker individuals, 10,139 Hispanic never smoker individuals	7q36.1		rs56167574-?	NR	2E-6	(African)	5.794	[3.43-8.16] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1738	chr7	151245974	151245975	rs56167574	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	LDL cholesterol levels x smoking (ever vs never smokers) interaction (1df test)	11,649 African ancestry ever smoker individuals, 3,999 Asian ancestry ever smoker individuals, 45,506 European ancestry ever smoker individuals, 2,554 Hispanic ever smoker individuals, 11,700 African ancestry never smoker individuals, 9,118 Asian ancestry never smoker individuals, 37,016 European ancestry never smoker individuals, 4,095 Hispanic never smoker individuals	1,693 African ancestry ever smoker individuals, 20,368 Asian ancestry ever smoker individuals, 65,806 European ancestry ever smoker individuals, 6,857 Hispanic ever smoker individuals, 2,025 African ancestry never smoker individuals, 27,981 Asian ancestry never smoker individuals, 51,361 European ancestry never smoker individuals, 10,139 Hispanic never smoker individuals	7q36.1		rs56167574-A	0.12	1E-8	(African)	6.5309	[4.27-8.79] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1738	chr7	151245974	151245975	rs56167574	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	LDL cholesterol levels x smoking (ever vs never smokers) interaction (1df test)	11,649 African ancestry ever smoker individuals, 3,999 Asian ancestry ever smoker individuals, 45,506 European ancestry ever smoker individuals, 2,554 Hispanic ever smoker individuals, 11,700 African ancestry never smoker individuals, 9,118 Asian ancestry never smoker individuals, 37,016 European ancestry never smoker individuals, 4,095 Hispanic never smoker individuals	1,693 African ancestry ever smoker individuals, 20,368 Asian ancestry ever smoker individuals, 65,806 European ancestry ever smoker individuals, 6,857 Hispanic ever smoker individuals, 2,025 African ancestry never smoker individuals, 27,981 Asian ancestry never smoker individuals, 51,361 European ancestry never smoker individuals, 10,139 Hispanic never smoker individuals	7q36.1		rs56167574-?	NR	5E-7	(African)	6.1654	[3.76-8.57] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1739	chr7	151277449	151277450	rs118160950	32277301	Okuda H	2020-04-10	Clin Exp Nephrol	Genome-wide association study identifies new loci for albuminuria in the Japanese population.	Urinary albumin excretion	7,805 Japanese ancestry individuals	NA	7q36.1	PRKAG2	rs118160950-T	0.036	3E-8		30.48	[19.67-41.29] unit increase	Illumina [4962728] (imputed)	N
1739	chr7	151298245	151298246	rs2727572	33527407	Truong T	2021-02-02	Int J Cancer	Multiethnic genome-wide association study of differentiated thyroid cancer in the EPITHYR consortium.	Differentiated thyroid cancer	1,554 European ancestry cases, 1,973 European ancestry controls, 301 Oceanian ancestry cases, 348 Oceanian ancestry controls	NA	7q36.1	NR	rs2727572-T	0.45	2E-7				Illumina [6479975] (imputed)	N
1739	chr7	151322271	151322272	rs4726066	30487263	Pollack S	2018-11-28	Diabetes	Multiethnic Genome-wide Association Study of Diabetic Retinopathy using Liability Threshold Modeling of Duration of Diabetes and Glycemic Control.	Proliferative diabetic retinopathy (vs no DR)	398 European ancestry cases, 1,970 European ancestry controls, 1,097 African American cases, 941 African American controls	1,354 East Asian ancestry cases, 1130 East Asian ancestry controls, 801 European ancestry cases, 2,880 European ancestry controls, 232 Hispanic cases, 1,048 Hispanic controls	7q36.1	NR	rs4726066-?	NR	5E-8	(AA)			Affymetrix, Illumina [NR] (imputed)	N
1739	chr7	151328217	151328218	rs4726070	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	7q36.1		rs4726070-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1739	chr7	151328217	151328218	rs4726070	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	7q36.1		rs4726070-A	0.6021	1E-17		0.0122	[0.0095-0.0149] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1739	chr7	151328217	151328218	rs4726070	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	7q36.1	Intergenic	rs4726070-A	0.6021	1E-18	(MTAG)	0.0118	[0.0093-0.0143] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1739	chr7	151328217	151328218	rs4726070	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	7q36.1	Intergenic	rs4726070-A	0.6074	1E-8	(MTAG)	0.0133	[0.0088-0.0178] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1739	chr7	151342639	151342640	rs2079987	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	7q36.1		rs2079987-C	0.4195	4E-15	(conditional-joint)	0.0112	[0.0085-0.0139] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1739	chr7	151343637	151343638	rs1345278	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	7q36.1	Intergenic	rs1345278-T	0.4246	9E-12	(MTAG)	0.0123	[0.0088-0.0158] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1739	chr7	151343637	151343638	rs1345278	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	7q36.1	Intergenic	rs1345278-T	0.4246	2E-9		0.0118	[0.0079-0.0157] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1739	chr7	151343637	151343638	rs1345278	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	7q36.1	Intergenic	rs1345278-T	0.4241	3E-16	(MTAG)	0.0136	[0.01-0.017] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1739	chr7	151354233	151354234	rs1335063112	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7q36.1	NR	rs1335063112-G	0.01045	3E-10	(ME1)	0.1103	NR unit increase	Illumina [1671387] (imputed)	N
1740	chr7	151394609	151394610	rs117045205	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	7q36.1	NR	rs117045205-T	NR	2E-11		0.0432	[0.031-0.056] unit increase	Affymetrix [9000000] (imputed)	N
1740	chr7	151394622	151394623	rs10269789	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	7q36.1	NR	rs10269789-T	NR	4E-10		0.0165	[0.011-0.022] unit increase	Affymetrix [9000000] (imputed)	N
1740	chr7	151402191	151402192	rs78573217	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	7q36.1	NR	rs78573217-A	NR	9E-20		0.0545	[0.043-0.066] unit decrease	Affymetrix [9000000] (imputed)	N
1740	chr7	151402191	151402192	rs78573217	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	7q36.1	NR	rs78573217-A	NR	1E-19		0.0545	[0.043-0.066] unit increase	Affymetrix [9000000] (imputed)	N
1740	chr7	151402191	151402192	rs78573217	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	7q36.1	NR	rs78573217-A	NR	7E-21		0.0562	[0.044-0.068] unit increase	Affymetrix [9000000] (imputed)	N
1740	chr7	151403504	151403505	rs10263707	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	7q36.1		rs10263707-?	NR	4E-11				NR [~ 8900000] (imputed)	N
1740	chr7	151404452	151404453	rs2727562	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	7q36.1	NR	rs2727562-G	NR	5E-10		0.0168	[0.012-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
1740	chr7	151404452	151404453	rs2727562	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	7q36.1	NR	rs2727562-G	NR	8E-20		0.0246	[0.019-0.03] unit increase	Affymetrix [9000000] (imputed)	N
1740	chr7	151404452	151404453	rs2727562	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	7q36.1	NR	rs2727562-G	NR	1E-17		0.0231	[0.018-0.028] unit decrease	Affymetrix [9000000] (imputed)	N
1740	chr7	151404452	151404453	rs2727562	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	7q36.1	NR	rs2727562-G	NR	8E-20		0.0246	[0.019-0.03] unit decrease	Affymetrix [9000000] (imputed)	N
1740	chr7	151405817	151405818	rs10480299	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Urea levels	20,700 European ancestry individuals	NA	7q36.1	PRKAG2	rs10480299-C	0.277872	3E-11		0.078771	[0.057-0.101] unit increase	Illumina [24961484] (imputed)	N
1740	chr7	151406004	151406005	rs10480300	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	7q36.1	PRKAG2	rs10480300-T	0.2755	4E-12		0.030123	[0.022-0.039] mg/dL increase	Affymetrix, Illumina [8217339] (imputed)	N
1740	chr7	151406004	151406005	rs10480300	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Gout	13,179 European, African American and unknown ancestry cases, 750,634 European, African American and unknown ancestry controls	NA	7q36.1	GALNTL5	rs10480300-?	NR	9E-6	(EA)			Affymetrix, Illumina [8249849] (imputed)	N
1740	chr7	151406004	151406005	rs10480300	23263486	Kottgen A	2012-12-23	Nat Genet	Genome-wide association analyses identify 18 new loci associated with serum urate concentrations.	Urate levels	49,825 European ancestry males, 60,522 European ancestry females	Up to 32,813 European ancestry individuals	7q36.1	PRKAG2	rs10480300-T	0.28	4E-9		0.035	[0.023-0.047] mg/dl increase	Affymetrix, Illumina, Perlegen [2450547] (imputed)	N
1740	chr7	151406004	151406005	rs10480300	23222517	van der Harst P	2012-12-05	Nature	Seventy-five genetic loci influencing the human red blood cell.	Red blood cell traits	62,553 European ancestry individuals, 9,308 South Asian ancestry individuals	63,506 European ancestry individuals	7q36.1	PRKAG2	rs10480300-C	0.72	8E-15	(EA, Hgb)	0.052	[0.038-0.066] unit increase	Affymetrix, Illumina, Perlegen [2711806] (imputed)	N
1740	chr7	151406219	151406220	rs17173238	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	7q36.1		rs17173238-?	NR	3E-28				NR [~ 8900000] (imputed)	N
1740	chr7	151406787	151406788	rs56012466	33893285	Guindo-Martinez M	2021-04-23	Nat Commun	The impact of non-additive genetic associations on age-related complex diseases.	Hypertension	28,391 European ancestry cases, 28,246 European ancestry controls	NA	7q36.1		rs56012466-A	0.2791596	4E-8		1.07		Affymetrix [11448799] (imputed)	N
1740	chr7	151406787	151406788	rs56012466	33137338	Gorski M	2020-10-30	Kidney Int	Meta-analysis uncovers genome-wide significant variants for rapid kidney function decline.	Estimated glomerular filtration rate (creatinine, CKDi25)	19,901 European, African American or Hispanic cases, 175,244 European, African American or Hispanic controls	NA	7q36.1	PRKAG2	rs56012466-A	0.27	2E-9		1.09	NR	Affymetrix, Illumina [> 8000000] (imputed)	N
1740	chr7	151406787	151406788	rs56012466	33137338	Gorski M	2020-10-30	Kidney Int	Meta-analysis uncovers genome-wide significant variants for rapid kidney function decline.	Estimated glomerular filtration rate (creatinine, CKDi25)	19,419 European ancestry cases, 169,087 European ancestry controls	NA	7q36.1	PRKAG2	rs56012466-A	NR	4E-9		1.09	[1.06-1.12]	Affymetrix, Illumina [> 8000000] (imputed)	N
1740	chr7	151406787	151406788	rs56012466	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	7q36.1	NR	rs56012466-?		2E-8	(Retrolenticular part of internal capsule)			NR [8955960] (imputed)	N
1740	chr7	151407800	151407801	rs7805747	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	7q36.1	NR	rs7805747-A	NR	7E-79		0.0501	[0.045-0.055] unit increase	Affymetrix [9000000] (imputed)	N
1740	chr7	151407800	151407801	rs7805747	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	7q36.1	NR	rs7805747-A	NR	5E-30		0.0304	[0.025-0.036] unit increase	Affymetrix [9000000] (imputed)	N
1740	chr7	151407800	151407801	rs7805747	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	7q36.1	NR	rs7805747-A	NR	1E-118		0.0616	[0.056-0.067] unit decrease	Affymetrix [9000000] (imputed)	N
1740	chr7	151407800	151407801	rs7805747	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	7q36.1	NR	rs7805747-A	NR	4E-94		0.0548	[0.05-0.06] unit increase	Affymetrix [9000000] (imputed)	N
1740	chr7	151407800	151407801	rs7805747	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	7q36.1	NR	rs7805747-A	NR	6E-122		0.0626	[0.057-0.068] unit increase	Affymetrix [9000000] (imputed)	N
1740	chr7	151407800	151407801	rs7805747	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	7q36.1	NR	rs7805747-A	NR	1E-9		0.0169	[0.011-0.022] unit increase	Affymetrix [9000000] (imputed)	N
1740	chr7	151407800	151407801	rs7805747	26831199	Pattaro C	2016-01-21	Nat Commun	Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function.	Glomerular filtration rate in non diabetics (creatinine)	118,448 European ancestry individuals	36,433 European ancestry individuals	7q36.1	PRKAG2	rs7805747-A	NR	2E-29		0.0136	[0.011-0.016] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1740	chr7	151407800	151407801	rs7805747	26831199	Pattaro C	2016-01-21	Nat Commun	Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function.	Glomerular filtration rate (creatinine)	133,413 European ancestry individuals	42,166 European ancestry individuals, up to 16,471 African ancestry individuals, up to 42,296 Asian ancestry individuals	7q36.1	PRKAG2	rs7805747-A	0.25	8E-29	(EA)	0.013	[0.011-0.015] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1740	chr7	151407800	151407801	rs7805747	26831199	Pattaro C	2016-01-21	Nat Commun	Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function.	Chronic kidney disease	12,385 European ancestry cases, 104,780 European ancestry controls	33,972 European ancestry individuals	7q36.1	PRKAG2	rs7805747-A	0.25	2E-14		1.16	[1.11-1.20]	Affymetrix, Illumina [~ 2500000] (imputed)	N
1740	chr7	151407800	151407801	rs7805747	20383146	Kottgen A	2010-04-11	Nat Genet	New loci associated with kidney function and chronic kidney disease.	Chronic kidney disease	Up to 67,093 European ancestry individuals	Up to 22,982 European ancestry individuals	7q36.1	PRKAG2	rs7805747-A	0.24	4E-12	(CKD)	1.18	[1.12-1.25]	Affymetrix, Illumina [~ 2500000] (imputed)	N
1740	chr7	151411493	151411494	rs73728279	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	7q36.1	PRKAG2	rs73728279-T		9E-152		0.063	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
1740	chr7	151411493	151411494	rs73728279	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	7q36.1	PRKAG2	rs73728279-T	0.2726	1E-14		0.033	[0.025-0.041] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1740	chr7	151411493	151411494	rs73728279	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	7q36.1	NR	rs73728279-T	0.2738	2E-9	(men)	0.0451	[0.03-0.06] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1740	chr7	151411493	151411494	rs73728279	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Chronic kidney disease	64,164 European and unknown ancestry cases, 561,055 European and unknown ancestry controls	NA	7q36.1	PRKAG2	rs73728279-T	0.27	7E-24		1.1124	[1.0896-1.1358]	Affymetrix, Illumina [9585923] (imputed)	N
1740	chr7	151411493	151411494	rs73728279	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	7q36.1	PRKAG2	rs73728279-T	0.2742	2E-46		0.0148	[0.013-0.017] unit increase	Affymetrix, Illumina [8176554] (imputed)	N
1740	chr7	151411493	151411494	rs73728279	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	7q36.1	PRKAG2	rs73728279-T	0.2824	3E-59		0.06414555	[0.056-0.072] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1740	chr7	151413123	151413124	rs6464165	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	7q36.1		rs6464165-C	NR	4E-32		0.0267	[0.022-0.031] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
1740	chr7	151413123	151413124	rs6464165	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	7q36.1		rs6464165-C	NR	2E-108		0.0501	[0.046-0.055] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
1740	chr7	151413123	151413124	rs6464165	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Hemoglobin	33,325 Amish, White ancestry individuals, 653 Asian ancestry individuals, 14,454 Black individuals, 14,029 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	7q36.1		rs6464165-C	NR	1E-14		0.06	[0.04-0.08] unit decrease	Illumina [110351653]	N
1740	chr7	151413123	151413124	rs6464165	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Hematocrit	33,324 Amish, White ancestry individuals, 654 Asian ancestry individuals, 14,474 Black individuals, 14,035 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	7q36.1		rs6464165-C	NR	9E-12		0.16	[0.12-0.2] unit decrease	Illumina [110396782]	N
1740	chr7	151413123	151413124	rs6464165	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	7q36.1	PRKAG2	rs6464165-C	0.2386	4E-33		11.983	NR z score decrease	Illumina [26237160] (imputed)	N
1740	chr7	151413123	151413124	rs6464165	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Creatinine levels	69,591 European ancestry individuals	NA	7q36.1	PRKAG2	rs6464165-C	0.286633	8E-12		0.046266	[0.034-0.058] unit increase	Illumina [24961484] (imputed)	N
1740	chr7	151413193	151413194	rs10224210	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	7q36.1		rs10224210-C	NR	1E-130		0.0511	[0.047-0.055] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
1740	chr7	151413193	151413194	rs10224210	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	7q36.1		rs10224210-C	NR	2E-144		0.0553	[0.051-0.06] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
1740	chr7	151413193	151413194	rs10224210	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	7q36.1		rs10224210-C	NR	5E-83		0.0492	[0.044-0.054] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
1740	chr7	151413193	151413194	rs10224210	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	7q36.1	NR	rs10224210-T	0.72	2E-38		0.0267	[0.023-0.031] unit decrease	NR [NR]	N
1740	chr7	151413193	151413194	rs10224210	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q36.1	NR	rs10224210-C	0.27098	3E-204				Affymetrix, Illumina [24332387] (imputed)	N
1740	chr7	151413193	151413194	rs10224210	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	7q36.1	NR	rs10224210-C	0.279374	6E-202		0.062846	[0.059-0.067] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1740	chr7	151413193	151413194	rs10224210	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	7q36.1	NR	rs10224210-C	0.279735	5E-223		0.065907	[0.062-0.07] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
1740	chr7	151413193	151413194	rs10224210	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q36.1	NR	rs10224210-C	0.271364	9E-246				Affymetrix, Illumina [24558453] (imputed)	N
1740	chr7	151413193	151413194	rs10224210	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	7q36.1	NR	rs10224210-C	0.279795	3E-246		0.069369	[0.065-0.073] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
1740	chr7	151413193	151413194	rs10224210	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in diabetes	70,762 European ancestry individuals, 20,967 African American individuals	NA	7q36.1	PRKAG2	rs10224210-T	0.738	5E-23		0.998	[0.8-1.2] unit increase	Affymetrix [NR] (imputed)	N
1740	chr7	151413193	151413194	rs10224210	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	7q36.1	PRKAG2	rs10224210-T	0.7236	2E-62	(EA)	0.0068	[0.006-0.0076] unit increase	Affymetrix [NR] (imputed)	N
1740	chr7	151413193	151413194	rs10224210	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	7q36.1		rs10224210-?	NR	5E-171				NR [~ 8900000] (imputed)	N
1740	chr7	151413193	151413194	rs10224210	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	7q36.1		rs10224210-?	NR	4E-13				NR [~ 8900000] (imputed)	N
1740	chr7	151413193	151413194	rs10224210	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	Urea levels	19,293 British ancestry individuals from 6863 families.	NA	7q36.1	PRKAG2	rs10224210-C	0.2799	6E-9		0.07304283	[0.048-0.098] mg/dl increase	Illumina [24111857] (imputed)	N
1740	chr7	151413193	151413194	rs10224210	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Hemoglobin levels	up to 40,258 European ancestry individuals, 16,128 African American individuals, up to 15,252 East Asian ancestry individuals.	16,389 European and African American individuals	7q36.1	TFR2, ACTL6B, IKZF1, PRKAG2	rs10224210-?	NR	3E-12				Affymetrix, Illumina [2500000] (imputed)	N
1740	chr7	151413193	151413194	rs10224210	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Hematocrit	up to 40,258 European ancestry individuals, up to 16,128 African American individuals, up to 15,252 East Asian ancestry individuals.	16,389 European and African American individuals	7q36.1	PRKAG2	rs10224210-?	NR	1E-8				NR [2500000] (imputed)	N
1740	chr7	151413193	151413194	rs10224210	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	7q36.1	PRKAG2	rs10224210-C	0.2822	5E-51		0.05947791	[0.052-0.067] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1740	chr7	151413193	151413194	rs10224210	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	7q36.1	PRKAG2	rs10224210-C	0.2822	3E-69		0.06918566	[0.061-0.077] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1740	chr7	151414328	151414329	rs10265221	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	7q36.1		rs10265221-C	NR	3E-122		0.0481	[0.044-0.052] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
1740	chr7	151414328	151414329	rs10265221	33418499	Lin BM	2021-01-06	EBioMedicine	Whole genome sequence analyses of eGFR in 23,732 people representing multiple ancestries in the NHLBI trans-omics for precision medicine (TOPMed) consortium.	Estimated glomerular filtration rate	8,459 African American individuals, 1,182 Hispanic/Latino individuals, 2,208 East Asian ancestry individuals, 11,837 European ancestry individuals, 46 Native American ancestry individuals	2,637 East Asian ancestry individuals, 6,767 Hispanic/Latino individuals, 3,031 Native American ancestry individuals	7q36.1		rs10265221-?	NR	3E-7		0.48163217	[0.3-0.67] ml/min/1.73 m2 decrease	NR [43622178]	N
1740	chr7	151414328	151414329	rs10265221	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	7q36.1	PRKAG2	rs10265221-C	0.286854	3E-147		0.06287049	[0.058-0.068] unit decrease	Affymetrix [93095623] (imputed)	N
1740	chr7	151414328	151414329	rs10265221	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	7q36.1	PRKAG2	rs10265221-C	0.286848	9E-177		0.06917733	[0.064-0.074] unit decrease	Affymetrix [93095623] (imputed)	N
1740	chr7	151414328	151414329	rs10265221	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	7q36.1	PRKAG2	rs10265221-C	0.286851	2E-194		0.07253988	[0.068-0.077] unit decrease	Affymetrix [93095623] (imputed)	N
1740	chr7	151414328	151414329	rs10265221	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q36.1	NR	rs10265221-C	0.233632	3E-222				Affymetrix, Illumina [24653286] (imputed)	N
1740	chr7	151414328	151414329	rs10265221	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in non-diabetics	152,624 European ancestry individuals, 36,369 African American individuals	NA	7q36.1	PRKAG2	rs10265221-T	0.72	7E-46		0.829	[0.72-0.94] unit increase	Affymetrix [NR] (imputed)	N
1740	chr7	151414328	151414329	rs10265221	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	7q36.1	PRKAG2	rs10265221-C	0.271	2E-26		0.847	[0.6-1.09] ml/min/1.73m2 decrease	Affymetrix, Illumina [at least 5248638] (imputed)	N
1740	chr7	151414328	151414329	rs10265221	27588450	Mahajan A	2016-09-01	Am J Hum Genet	Trans-ethnic Fine Mapping Highlights Kidney-Function Genes Linked to Salt Sensitivity.	Glomerular filtration rate	23,553 European ancestry individuals, 23,536 Japanese individuals, 16,325 Hispanic individuals, 8,224 African American individuals	NA	7q36.1	PRKAG2	rs10265221-C	NR	7E-11		0.963	[0.68-1.25] unit decrease	Affymetrix, Illumina [at least 6581000] (imputed)	N
1740	chr7	151414328	151414329	rs10265221	27588450	Mahajan A	2016-09-01	Am J Hum Genet	Trans-ethnic Fine Mapping Highlights Kidney-Function Genes Linked to Salt Sensitivity.	Glomerular filtration rate	23,553 European ancestry individuals, 23,536 Japanese individuals, 16,325 Hispanic individuals, 8,224 African American individuals	NA	7q36.1	PRKAG2	rs10265221-C	0.29	4E-6	(EA)	0.85	[0.49-1.21] unit decrease	Affymetrix, Illumina [at least 6581000] (imputed)	N
1740	chr7	151414328	151414329	rs10265221	27005778	Kettunen J	2016-03-23	Nat Commun	Genome-wide study for circulating metabolites identifies 62 loci and reveals novel systemic effects of LPA.	Metabolite levels (small molecules and protein measures)	2,118 Erasmus Rucphen (founder/genetic isolate), 22,807 European ancestry individuals	NA	7q36.1	PRKAG2	rs10265221-C	0.24	8E-11	(Creatinine)	0.07	[0.05-0.09] unit increase	Affymetrix, Illumina, Perlegen [12133295] (imputed)	N
1740	chr7	151414667	151414668	rs117116870	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	7q36.1	NR	rs117116870-A	NR	3E-9		0.0549	[0.037-0.073] unit decrease	Affymetrix [9000000] (imputed)	N
1740	chr7	151414667	151414668	rs117116870	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	7q36.1	NR	rs117116870-A	NR	1E-9		0.0564	[0.038-0.075] unit increase	Affymetrix [9000000] (imputed)	N
1740	chr7	151415040	151415041	rs10224002	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Creatinine levels	110,051 European ancestry individuals	NA	7q36.1		rs10224002-A	0.710802	2E-40		0.0520189	[0.044-0.06] unit decrease	NR [11722792] (imputed)	N
1740	chr7	151415040	151415041	rs10224002	33832965	Sandoval-Plata G	2021-04-08	Ann Rheum Dis	Variants in urate transporters, ADH1B, GCKR and MEPE genes associate with transition from asymptomatic hyperuricaemia to gout: results of the first gout versus asymptomatic hyperuricaemia GWAS in Caucasians using data from the UK Biobank.	Gout	7,049 European ancestry cases, 64,424 European ancestry controls	NA	7q36.1	PRKAG2	rs10224002-G	0.29	4E-10		1.14	[1.10-1.19]	Affymetrix [710030]	N
1740	chr7	151415040	151415041	rs10224002	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	7q36.1	PRKAG2	rs10224002-A	0.7175	7E-118		0.0068	[0.006-0.0076] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
1740	chr7	151415040	151415041	rs10224002	29703844	van Zuydam NR	2018-04-27	Diabetes	A Genome-Wide Association Study of Diabetic Kidney Disease in Subjects With Type 2 Diabetes.	Glomerular filtration rate in type 2 diabetes	9,197 European ancestry individuals	9,333 European ancestry individuals, 7,405 Asian individuals, 975 Chinese ancestry individuals, 384 Indian ancestry individuals, 307 Malay ancestry individuals	7q36.1	PRKAG2	rs10224002-?		8E-7	(EA)	2.13	[1.28-2.98] unit increase	Affymetrix, Illumina [up to 9343778] (imputed)	N
1740	chr7	151415040	151415041	rs10224002	29703844	van Zuydam NR	2018-04-27	Diabetes	A Genome-Wide Association Study of Diabetic Kidney Disease in Subjects With Type 2 Diabetes.	Glomerular filtration rate in type 2 diabetes	9,197 European ancestry individuals	9,333 European ancestry individuals, 7,405 Asian individuals, 975 Chinese ancestry individuals, 384 Indian ancestry individuals, 307 Malay ancestry individuals	7q36.1	PRKAG2	rs10224002-?		5E-8		2.27	[1.45-3.09] unit increase	Affymetrix, Illumina [up to 9343778] (imputed)	N
1740	chr7	151415040	151415041	rs10224002	29703844	van Zuydam NR	2018-04-27	Diabetes	A Genome-Wide Association Study of Diabetic Kidney Disease in Subjects With Type 2 Diabetes.	Glomerular filtration rate in diabetes	13,158 European ancestry individuals	9,333 European ancestry individuals, 7,405 Asian individuals, 975 Chinese ancestry individuals, 384 Indian ancestry individuals, 307 Malay ancestry individuals	7q36.1	PRKAG2	rs10224002-A	0.74	3E-8		2.01	[1.30-2.72]	Affymetrix, Illumina [up to 9343778] (imputed)	N
1740	chr7	151415040	151415041	rs10224002	29703844	van Zuydam NR	2018-04-27	Diabetes	A Genome-Wide Association Study of Diabetic Kidney Disease in Subjects With Type 2 Diabetes.	Glomerular filtration rate in diabetes	13,158 European ancestry individuals	9,333 European ancestry individuals, 7,405 Asian individuals, 975 Chinese ancestry individuals, 384 Indian ancestry individuals, 307 Malay ancestry individuals	7q36.1	PRKAG2	rs10224002-A	0.74	3E-7	(EA)	1.89	[1.17-2.62]	Affymetrix, Illumina [up to 9343778] (imputed)	N
1740	chr7	151415040	151415041	rs10224002	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	7q36.1	PRKAG2	rs10224002-A		4E-7		0.307	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1740	chr7	151415040	151415041	rs10224002	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	7q36.1	PRKAG2	rs10224002-A		1E-15		0.341	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1740	chr7	151415040	151415041	rs10224002	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	7q36.1	PRKAG2	rs10224002-A		4E-9		0.167	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1740	chr7	151415040	151415041	rs10224002	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	7q36.1	PRKAG2	rs10224002-A		2E-11		0.174	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1740	chr7	151415040	151415041	rs10224002	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Systolic blood pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	7q36.1	PRKAG2	rs10224002-A	0.7305	3E-7		0.0191	unit decrease	Illumina [242296]	N
1740	chr7	151415040	151415041	rs10224002	19862010	Ganesh SK	2009-10-11	Nat Genet	Multiple loci influence erythrocyte phenotypes in the CHARGE Consortium.	Hemoglobin	24,167 European ancestry individuals	9,456 European ancestry individuals	7q36.1	PRKAG2	rs10224002-G	NR	3E-15		0.07	[0.05-0.09] g/dl increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1740	chr7	151415040	151415041	rs10224002	19862010	Ganesh SK	2009-10-11	Nat Genet	Multiple loci influence erythrocyte phenotypes in the CHARGE Consortium.	Hematocrit	24,167 European ancestry individuals	9,456 European ancestry individuals	7q36.1	PRKAG2	rs10224002-G	NR	6E-15		0.2	[0.15-0.25] % increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1740	chr7	151415232	151415233	rs73158188	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	7q36.1	PRKAG2	rs73158188-T	0.2725	5E-11		0.1837	[0.13-0.24] mmHg increase	Affymetrix [NR] (imputed)	N
1740	chr7	151415255	151415256	rs10253736	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red blood cell count	8,679 African American individuals, 17,412 Hispanic or Latin American individuals, 14,690 European ancestry individuals, 127 Asian ancestry individuals, 20 Native American ancestry individuals, 382 individuals	NA	7q36.1		rs10253736-?	0.7571	6E-7		0.0177	[0.011-0.025] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
1740	chr7	151415255	151415256	rs10253736	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Hemoglobin concentration	29,379 European ancestry individuals	NA	7q36.1		rs10253736-?	0.7102	1E-9		0.0562	[0.038-0.074] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
1740	chr7	151415255	151415256	rs10253736	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Hemoglobin concentration	20,692 Hispanic or Latin American individuals	NA	7q36.1		rs10253736-?	0.8025	3E-8		0.0786	[0.051-0.106] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
1740	chr7	151415255	151415256	rs10253736	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Hemoglobin concentration	16,186 African American individuals, 20,692 Hispanic or Latin American individuals, 29,379 European ancestry individuals, 630 Asian ancestry individuals, 601 Native American ancestry individuals, 381 individuals	NA	7q36.1		rs10253736-?	0.7571	5E-14		0.0547	[0.04-0.069] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
1740	chr7	151415255	151415256	rs10253736	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Hematocrit	29,383 European ancestry individuals	NA	7q36.1		rs10253736-?	0.7102	5E-9		0.1593	[0.11-0.21] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
1740	chr7	151415255	151415256	rs10253736	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Hematocrit	20,704 Hispanic or Latin American individuals	NA	7q36.1		rs10253736-?	0.8025	5E-7		0.2062	[0.13-0.29] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
1740	chr7	151415255	151415256	rs10253736	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Hematocrit	16,184 African American individuals, 20,704 Hispanic or Latin American individuals, 29,383 European ancestry individuals, 631 Asian ancestry individuals, 601 Native American ancestry individuals, 381 individuals	NA	7q36.1		rs10253736-?	0.7571	4E-13		0.1546	[0.11-0.2] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
1740	chr7	151415535	151415536	rs10254101	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	7q36.1		rs10254101-T	NR	4E-8		0.0125	[0.008-0.017] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
1740	chr7	151415535	151415536	rs10254101	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	7q36.1	PRKAG2	rs10254101-T	0.2768	7E-124		0.0068	[0.006-0.0076] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
1740	chr7	151415535	151415536	rs10254101	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls	NA	7q36.1	PRKAG2	rs10254101-T	0.287323	2E-8		0.04974168	[0.032-0.067] unit increase	Affymetrix [7288503] (imputed)	N
1740	chr7	151415535	151415536	rs10254101	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	7q36.1	PRKAG2	rs10254101-T	0.288171	3E-11		0.044029605	[0.031-0.057] unit increase	Affymetrix [7288503] (imputed)	N
1740	chr7	151415535	151415536	rs10254101	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	7q36.1	PRKAG2	rs10254101-T	0.2726	2E-20		0.3459	[0.27-0.42] mmHg increase	Affymetrix [NR] (imputed)	N
1740	chr7	151415535	151415536	rs10254101	28452372	Gorski M	2017-04-28	Sci Rep	1000 Genomes-based meta-analysis identifies 10 novel loci for kidney function.	Glomerular filtration rate (creatinine)	110,517 European ancestry individuals		7q36.1	PRKAG2	rs10254101-T	NR	6E-20		0.0104	[0.0082-0.0126] unit decrease	Affymetrix, Illumina [up to 10971307] (imputed)	N
1740	chr7	151472990	151472991	rs4726091	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Epithelial ovarian cancer	1,112 White British ancestry cases, 147,944 White British ancestry controls	NA	7q36.1		rs4726091-?	NR	3E-6		1.34051	[1.22-1.46]	NR [666300]	N
1740	chr7	151498678	151498679	rs4128399	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	7q36.1		rs4128399-C	0.16	1E-35		12.48	z score increase	Affymetrix [9061022] (imputed)	N
1740	chr7	151498678	151498679	rs4128399	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	7q36.1		rs4128399-C	0.16	4E-31		11.6	z score increase	Affymetrix [9061022] (imputed)	N
1740	chr7	151498678	151498679	rs4128399	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	7q36.1		rs4128399-C	0.16	9E-16		8.04	z score increase	Affymetrix [9061022] (imputed)	N
1740	chr7	151498678	151498679	rs4128399	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	7q36.1	NR	rs4128399-C	0.1614	1E-17				NR [9056863] (imputed)	N
1740	chr7	151498678	151498679	rs4128399	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	7q36.1	NR	rs4128399-C	0.1614	1E-14				NR [9056863] (imputed)	N
1740	chr7	151498678	151498679	rs4128399	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (min-P)	26,502 European ancestry individuals	NA	7q36.1	KCNK2	rs4128399-?		9E-15				NR [7428630] (imputed)	N
1740	chr7	151498678	151498679	rs4128399	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	7q36.1	ADAMTS9	rs4128399-?		1E-13				NR [7428630] (imputed)	N
1740	chr7	151498678	151498679	rs4128399	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (min-P)	26,502 European ancestry individuals	NA	7q36.1	POU3F3	rs4128399-?		2E-14				NR [7428630] (imputed)	N
1740	chr7	151498678	151498679	rs4128399	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	7q36.1	PRKAG2	rs4128399-?		2E-15				NR [7428630] (imputed)	N
1740	chr7	151498678	151498679	rs4128399	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Intraocular pressure	133,492 European ancestry individuals	NA	7q36.1	PRKAG2	rs4128399-T	0.83	8E-7				Affymetrix, Illumina [8002429] (imputed)	N
1740	chr7	151498678	151498679	rs4128399	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Glaucoma	7,947 British ancestry cases, 119,318 British ancestry controls	NA	7q36.1	PRKAG2	rs4128399-C	0.17	3E-8		1.1235955	NR	Affymetrix [at least 8002429] (imputed)	N
1740	chr7	151498678	151498679	rs4128399	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	7q36.1	NR	rs4128399-?	NR	3E-10	(X4th ventricle)			NR [9227495] (imputed)	N
1740	chr7	151498678	151498679	rs4128399	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	7q36.1	PRKAG2	rs4128399-T	0.833	1E-10		0.118	[0.083-0.153] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1740	chr7	151502301	151502302	rs9648724	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Tenofovir clearance in HIV infection	243 European ancestry cases, 149 African American cases, 100 Hispanic American cases, 9 unknown ancestry cases	NA	7q36.1	NR	rs9648724-?		1E-6	(Hispanic)			Illumina [~ 5190000] (imputed)	N
1740	chr7	151502301	151502302	rs9648724	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Tenofovir clearance in HIV infection	243 European ancestry cases, 149 African American cases, 100 Hispanic American cases, 9 unknown ancestry cases	NA	7q36.1	NR	rs9648724-?		1E-6	(Hispanic)			Illumina [~ 5190000] (imputed)	N
1740	chr7	151505697	151505698	rs62478245	29891935	Choquet H	2018-06-11	Nat Commun	A multiethnic genome-wide association study of primary open-angle glaucoma identifies novel risk loci.	Glaucoma (primary open-angle)	10,523 European ancestry cases, 203,579 European ancestry controls, 411 Hispanic cases, 4,778 Hispanic controls, 463 East Asian ancestry cases, 4,907 East Asian ancestry controls, 298 African American cases, 1,549 African American controls, 204 South Asian ancestry cases, 4,916 South Asian ancestry controls, 272 African British cases, 4,831 African British controls, 144 mixed ancestry cases, 3,427 mixed ancestry controls	NA	7q36.1	PRKAG2	rs62478245-T	NR	3E-8		1.2195122	[1.14-1.32]	Affymetrix [at least 665500] (imputed)	N
1741	chr7	151520484	151520485	rs35148810	27723756	Wang J	2016-10-10	Nat Genet	Genome-wide association analysis identifies variation in vitamin D receptor and other host factors influencing the gut microbiota.	Gut microbiota (beta diversity)	1,812 European ancestry individuals	371 European ancestry individuals	7q36.1	PRKAG2	rs35148810-?	NR	5E-8		0.83	NR percent increase	Affymetrix, Illumina [6344846] (imputed)	N
1741	chr7	151546588	151546589	rs7795096	21305692	Belmonte Mahon P	2011-02-08	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association analysis of age at onset and psychotic symptoms in bipolar disorder.	Bipolar disorder (age of onset and psychotic symptoms)	2,836 European ancestry cases, 2,744 European ancestry controls	3,916 European cases, 5,112 controls	7q36.1	PRKAG2	rs7795096-?	NR	2E-6	(psychotic symptoms)	1.2	[NR]	Affymetrix, Illumina [2373895] (imputed)	N
1741	chr7	151602695	151602696	rs12703179	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Supramarginal gyrus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	7q36.1	NR	rs12703179-?		9E-6				Illumina [4322238] (imputed)	N
1741	chr7	151616837	151616838	rs7794104	33407418	Jonsson A	2021-01-06	BMC Med Genomics	Genome-wide association study of circulating levels of glucagon during an oral glucose tolerance test.	Glucagon levels in response to oral glucose tolerance test (decremental area under the curve for 0-30 minutes)	553 European ancestry individuals, 1,346 individuals	NA	7q36.1	PRKAG2/GALNTL5	rs7794104-T	0.92	7E-7		0.334	[0.2-0.47] unit decrease	Illumina [NR] (imputed)	N
1742	chr7	151684293	151684294	rs75797831	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Breast cancer	10,682 White British ancestry cases, 138,504 White British ancestry controls	NA	7q36.1		rs75797831-?	NR	8E-6		1.63522	[1.42-1.85]	NR [682398]	N
1742	chr7	151706188	151706189	rs114174633	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	7q36.1	GALNTL5	rs114174633-A	1.0	6E-8	(AA)	0.592	unit increase	Illumina [NR] (imputed)	N
1742	chr7	151710546	151710547	rs1019173	25493955	Gorski M	2014-12-10	Kidney Int	Genome-wide association study of kidney function decline in individuals of European descent.	Kidney function decline traits	up to 45,530 European ancestry individuals	up to 18,028 European ancestry individuals	7q36.1	GALNTL5, GALNT11, MLL3, CCT8L1	rs1019173-A	0.63	2E-7	(Rapid decline overall)	0.1	[NR] unit decrease	Affymetrix, Illumina [2500000] (imputed)	N
1742	chr7	151716710	151716711	rs141892389	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	7q36.1	GALNTL5	rs141892389-A	0.999	1E-6	(AA)	0.495	unit increase	Illumina [NR] (imputed)	N
1742	chr7	151729216	151729217	rs188061594	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	7q36.1	GALNT11	rs188061594-T	0.999	2E-6	(AA)	0.418	unit increase	Illumina [NR] (imputed)	N
1742	chr7	151730890	151730891	rs147962389	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	7q36.1	GALNT11	rs147962389-A	0.999	2E-6	(AA)	0.413	unit increase	Illumina [NR] (imputed)	N
1742	chr7	151731802	151731803	rs189909051	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	7q36.1	GALNT11	rs189909051-T	0.999	2E-6	(AA)	0.41	unit increase	Illumina [NR] (imputed)	N
1742	chr7	151737019	151737020	rs149774937	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	7q36.1	GALNT11	rs149774937-C	0.999	3E-6	(AA)	0.401	unit increase	Illumina [NR] (imputed)	N
1742	chr7	151739051	151739052	rs149619169	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	7q36.1	GALNT11	rs149619169-C	0.999	3E-6	(AA)	0.398	unit increase	Illumina [NR] (imputed)	N
1742	chr7	151739269	151739270	rs148376973	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	7q36.1	GALNT11	rs148376973-T	0.999	3E-6	(AA)	0.397	unit increase	Illumina [NR] (imputed)	N
1742	chr7	151740810	151740811	rs183747217	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	7q36.1	GALNT11	rs183747217-C	0.999	4E-6	(AA)	0.394	unit increase	Illumina [NR] (imputed)	N
1742	chr7	151742101	151742102	rs114004118	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	7q36.1	GALNT11	rs114004118-A	0.999	4E-6	(AA)	0.392	unit increase	Illumina [NR] (imputed)	N
1742	chr7	151743792	151743793	rs150256815	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	7q36.1	GALNT11	rs150256815-G	0.999	4E-6	(AA)	0.39	unit increase	Illumina [NR] (imputed)	N
1742	chr7	151748473	151748474	rs139557951	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	7q36.1	GALNT11	rs139557951-C	0.999	5E-6	(AA)	0.384	unit increase	Illumina [NR] (imputed)	N
1742	chr7	151749258	151749259	rs149069622	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	7q36.1	GALNT11	rs149069622-G	0.999	5E-6	(AA)	0.383	unit increase	Illumina [NR] (imputed)	N
1743	chr7	151790025	151790026	rs10238767	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	7q36.1	NR	rs10238767-?	NR	2E-12				Affymetrix [NR]	N
1743	chr7	151910694	151910695	rs147810622	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	PDL-1 on monocyte	3,629 Sardinian (founder/genetic isolate) ancestry individuals	NA	7q36.1		rs147810622-G	0.0169	4E-9		0.5881	[0.39-0.78] unit decrease	Illumina [18218967] (imputed)	N
1745	chr7	152143043	152143044	rs148564556	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	7q36.1	CCT8L1P	rs148564556-A	0.0441	3E-6		0.0923	[0.054-0.131] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1746	chr7	152225836	152225837	rs13237598	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	7q36.1		rs13237598-T	NR	3E-9		0.0144	[0.0097-0.0191] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
1746	chr7	152262797	152262798	rs10952362	26305897	Iyengar SK	2015-08-25	PLoS Genet	Genome-Wide Association and Trans-ethnic Meta-Analysis for Advanced Diabetic Kidney Disease: Family Investigation of Nephropathy and Diabetes (FIND).	Diabetic kidney disease	1,564 African American cases, 369  African American diabetic controls, 1,288 African American non-diabetic controls, 538 American Indian ancestry cases, 319 American Indian ancestry diabetic controls, 342 European ancestry cases, 404 European ancestry diabetic controls, 779 Mexican ancestry cases, 594 Mexican ancestry diabetic controls	950 African American cases, 50 African American diabetic controls, 1,887 African American non-diabetic controls, 471 American Indian ancestry cases, 340 American Indian ancestry diabetic controls, 486 American Indian ancestry non-diabetic controls, 582 European ancestry ancestry cases, 205 European ancestry diabetic controls, 2,568 European ancestry non-diabetic controls	7q36.1	XRCC2	rs10952362-C	0.5	2E-7	(American Indian, additive )	1.42	[1.24-1.63]	Affymetrix [NR]	N
1747	chr7	152338628	152338629	rs189842957	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	7q36.1	NR	rs189842957-T	NR	6E-6	(GEE model)	0.51509	[0.29-0.74] unit decrease	NR [NR] (imputed)	N
1747	chr7	152342284	152342288	rs145530953	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	7q36.1	XRCC2	rs145530953-G	0.039299	3E-13		0.042943597	[0.031-0.054] unit decrease	Affymetrix [93095623] (imputed)	N
1747	chr7	152351813	152351819	rs3218502	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	7q36.1	XRCC2	rs3218502-A	0.083823	1E-35		0.050384223	[0.042-0.058] unit decrease	Affymetrix [93095623] (imputed)	N
1747	chr7	152357058	152357059	rs3218477	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	7q36.1	XRCC2	rs3218477-T	0.0834	4E-11		0.04313839	[0.03-0.056] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1747	chr7	152360415	152360416	rs3218455	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q36.1	NR	rs3218455-A	0.917846	2E-37				Affymetrix, Illumina [17210439] (imputed)	N
1747	chr7	152360415	152360416	rs3218455	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	7q36.1	NR	rs3218455-A	0.916081	6E-41		0.046278	[0.04-0.053] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1747	chr7	152380803	152380804	rs12538854	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	7q36.1		rs12538854-A	NR	4E-8		0.0125	[0.008-0.017] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1747	chr7	152387868	152387869	rs10234749	23362303	Wu JH	2013-01-29	Circ Cardiovasc Genet	Genome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortium.	Palmitic acid (16:0) levels	8,961 European ancestry individuals		7q36.1	XRCC2	rs10234749-T	NR	4E-6		0.1788	unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1747	chr7	152391898	152391899	rs13232006	21844884	Wheeler HE	2011-08-16	Pharmacogenomics J	Genome-wide meta-analysis identifies variants associated with platinating agent susceptibility across populations.	Response to platinum-based chemotherapy (carboplatin)	176 Sub-Saharan African ancestry lymphoblastoid cell lines, 83 African ancestry lymphoblastoid cell lines, 175 East Asian ancestry lymphoblastoid cell lines, 174 European ancestry lymphoblastoid cell lines	NA	7q36.1	intergenic	rs13232006-?		4E-6				NR [~ 3000000] (imputed)	N
1747	chr7	152418737	152418738	rs12155507	33106475	Li QS	2020-10-26	Transl Psychiatry	Genome-wide association studies of antidepressant class response and treatment-resistant depression.	Response to antidepressants (non-treatment-resistant vs treatment-resistant depression)	21,649 European ancestry individuals with non-treatment-resistant depression, 3,857 European ancestry individuals with treatment-resistant depression	NA	7q36.1	NR	rs12155507-G	NR	9E-6		1.3945	NR	Illumina [at least 560000] (imputed)	N
1749	chr7	152579861	152579862	rs138921315	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Trunk fat mass	3,399 whole genome sequenced individuals, 12,838 European ancestry individuals	10,667 European ancestry individuals	7q36.2	ACTR3B	rs138921315-T	0.0096	2E-7		0.4779	[0.3-0.66] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1749	chr7	152579861	152579862	rs138921315	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body fat mass	3,399 whole genome sequenced individuals, 11,802 European ancestry individuals	10,670 European ancestry individuals	7q36.2	ACTR3B	rs138921315-T	0.0095	1E-7		0.4636	[0.29-0.64] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1749	chr7	152595806	152595807	rs10256342	28084903	Hallberg P	2017-01-13	Pharmacogenomics	Genetic variants associated with angiotensin-converting enzyme inhibitor-induced cough: a genome-wide association study in a Swedish population.	Cough in response to angiotensin-converting enzyme inhibitor drugs	123 European ancestry cases, 1,345 European and unknown ancestry controls, 1 Middle Eastern ancestry case	NR	7q36.2	Intergenic	rs10256342-?	NR	4E-6		2.44	[1.67-3.58]	Illumina [8600000] (imputed)	N
1749	chr7	152621649	152621650	rs73728902	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	CAG-269 sp002372935 abundance in stool	5,959 Finnish ancestry individuals	NA	7q36.2		rs73728902-C	0.246052	3E-8		0.0658291	[0.043-0.089] unit increase	Illumina [7980478] (imputed)	N
1749	chr7	152635943	152635944	rs2535974	28644415	Guenard F	2017-06-23	Nutrients	Genome-Wide Association Study of Dietary Pattern Scores.	Western dietary pattern	141 individuals	NA	7q36.2	ACTR3B	rs2535974-?	NR	2E-6				Illumina [2668805]	N
1749	chr7	152669839	152669840	rs11981919	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	7q36.2	ACTR3B	rs11981919-A	0.01	9E-6	(Weight )	0.02	[NR] kg increase	Illumina [899892]	N
1750	chr7	152717109	152717110	rs11978753	28352666	Liu TC	2017-03-23	JCI Insight	LRRK2 but not ATG16L1 is associated with Paneth cell defect in Japanese Crohn's disease patients.	Paneth cell defects in Crohn's disease	98 Japanese ancestry cases	NA	7q36.2	ACTR3B	rs11978753-G	NR	4E-6		5.941	unit decrease	Affymetrix [4198245] (imputed)	N
1750	chr7	152723579	152723580	rs78527084	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Number of common colds	43,826 European ancestry cases, 15,720 European ancestry controls	NA	7q36.2	NR	rs78527084-?	NR	9E-7		0.0462	[0.028-0.065] unit increase	Illumina [at least 560000] (imputed)	N
1750	chr7	152745809	152745810	rs4725479	25082827	Julia A	2014-07-31	Hum Mol Genet	A genome-wide association study identifies a novel locus at 6q22.1 associated with ulcerative colitis.	Ulcerative colitis	up to 7,483 European ancestry cases, up to 21,211 European ancestry controls	1,073 European ancestry cases, 1,279 European ancestry controls	7q36.2	ACTR3B	rs4725479-?	0.66	5E-7	(Southern European)	1.19	[1.04-1.35]	Illumina [546271]	N
1750	chr7	152821631	152821632	rs144369419	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	7q36.2	NR	rs144369419-T	0.0114	5E-7		0.0301	[0.018-0.042] unit decrease	NR [7666894] (imputed)	N
1750	chr7	152823815	152823816	rs4629772	27663945	Middeldorp CM	2016-08-05	J Am Acad Child Adolesc Psychiatry	A Genome-Wide Association Meta-Analysis of Attention-Deficit/Hyperactivity Disorder Symptoms in Population-Based Pediatric Cohorts.	Attention deficit hyperactivity disorder symptom score	17,666 children	NA	7q36.2	ACTR3B	rs4629772-A	0.93	2E-6				Affymetrix, Illumina [at least 5260671] (imputed)	N
1751	chr7	152878332	152878333	rs4285401	23942779	McGue M	2013-08-14	Behav Genet	A genome-wide association study of behavioral disinhibition.	Nicotine use	7,188 European ancestry individuals	NA	7q36.2	NR	rs4285401-A	0.447	2E-6		5.599	[NR] unit increase	Illumina [527829]	N
1752	chr7	152976245	152976246	rs13239964	30172743	Liang X	2018-08-30	Bone	Assessing the genetic correlations between early growth parameters and bone mineral density: A polygenic risk score analysis.	Ulna and radius bone mineral density	2,286 European ancestry individuals	NA	7q36.2	ACTR3B	rs13239964-?	NR	7E-6				Affymetrix [753382]	N
1752	chr7	152984080	152984081	rs1722923	31872054	Wei L	2019-11-08	Neurol Genet	Identification of TYW3/CRYZ and FGD4 as susceptibility genes for amyotrophic lateral sclerosis.	Amyotrophic lateral sclerosis	666 Han Chinese ancestry cases, 3,988 Han Chinese ancestry controls	up to 884 Han Chinese ancestry cases, up to 5,329 Han Chinese ancestry controls	7q36.2	NR	rs1722923-?	NR	4E-6		1.2820514	NR	Illumina [456414]	N
1752	chr7	152990763	152990764	rs115291013	33075057	Li X	2020-10-19	PLoS Genet	Automated feature extraction from population wearable device data identified novel loci associated with sleep and circadian rhythms.	Sleep (1/2-day periodicity)	90,515 individuals	NA	7q36.2	LINC01287	rs115291013-G	NR	3E-8		0.546	[0.35-0.74] unit increase	NR [11024754] (imputed)	N
1752	chr7	153056619	153056620	rs4726279	25461247	Lehmann DS	2015-02-01	Pharmacogenet Genomics	Genome-wide association study of virologic response with efavirenz-containing or abacavir-containing regimens in AIDS clinical trials group protocols.	Response to abacavir-containing treatment in HIV-1 infection (virologic failure)	Up 346 European ancestry individuals, Up to 265 Black individuals, Up to 175 Hispanic individuals	NA	7q36.2	NR	rs4726279-T	NR	9E-6	(phenotype 1)	2.7	[NR]	Illumina [> 8000000] (imputed)	N
1753	chr7	153094738	153094739	rs10245542	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Enterococcus A abundance in stool	5,959 Finnish ancestry individuals	NA	7q36.2		rs10245542-A	0.0122177	2E-8		0.129211	[0.084-0.174] unit increase	Illumina [7980478] (imputed)	N
1753	chr7	153202207	153202208	rs150278203	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	7q36.2	intergenic	rs150278203-C	NR	2E-6	(AA)			Illumina [up to 11995908] (imputed)	N
1753	chr7	153202207	153202208	rs150278203	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	7q36.2	intergenic	rs150278203-C	NR	2E-6				Illumina [up to 11995908] (imputed)	N
1754	chr7	153234670	153234670	rs143897511	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	150,068 East Asian ancestry individuals	NA	7q36.2		rs143897511-GGCA	0.451987	2E-8		0.0194854	[0.013-0.026] unit decrease	Illumina [13478956] (imputed)	N
1754	chr7	153271876	153271877	rs11771429	24121790	Levine DM	2013-10-13	Nat Genet	A genome-wide association study identifies new susceptibility loci for esophageal adenocarcinoma and Barrett's esophagus.	Digestive system disease (Barrett's esophagus and esophageal adenocarcinoma combined)	3,928 European ancestry cases, 3,207 European ancestry controls	1,636 European ancestry cases, 6,911 European ancestry controls	7q36.2	NR	rs11771429-G	0.816	8E-6		1.1905	[1.1-1.28]	Illumina [922031]	N
1754	chr7	153271876	153271877	rs11771429	24121790	Levine DM	2013-10-13	Nat Genet	A genome-wide association study identifies new susceptibility loci for esophageal adenocarcinoma and Barrett's esophagus.	Barrett's esophagus	2,416 European ancestry cases, 3,206 European ancestry controls	759 European ancestry cases, 6,911 European ancestry controls	7q36.2	NR	rs11771429-G	0.816	7E-6		1.2195	[1.12-1.33]	Illumina [922031]	N
1754	chr7	153305422	153305423	rs4725504	29855537	Hirata T	2018-05-31	Sci Rep	Japanese GWAS identifies variants for bust-size, dysmenorrhea, and menstrual fever that are eQTLs for relevant protein-coding or long non-coding RNAs.	Menstruation quality of life impact (pressure in breast)	642 Japanese ancestry female cases, 5,092 Japanese ancestry female controls	667 Japanese ancestry female cases, 4,947 Japanese ancestry female controls	7q36.2	NR	rs4725504-G	0.550647176	9E-6		0.18980134	[0.11-0.27] unit increase	Affymetrix [536506]	N
1755	chr7	153462805	153462806	rs2533148	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	7q36.2	LOC101929087	rs2533148-T	0.5113	3E-9		0.015321704	[0.01-0.02] unit decrease	Affymetrix [~ 11515000] (imputed)	N
1756	chr7	153486703	153486704	rs2622167	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter alcoholic beverage consumption	336,448 European ancestry individuals	39,924 European ancestry individuals	7q36.2	DPP6	rs2622167-A	0.4267	4E-10		0.0066	[0.0044-0.0088] unit increase	Affymetrix [~ 7740000] (imputed)	N
1756	chr7	153487943	153487944	rs2098112	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Problematic alcohol use (MTAG)	972,915 European ancestry individuals	NA	7q36.2	NR	rs2098112-A	0.4733	2E-13		0.015274133	[0.011-0.019] unit increase	Affymetrix [10613246] (imputed)	N
1756	chr7	153487943	153487944	rs2098112	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol consumption (drinks per week) (MTAG)	972,915 European ancestry individuals	NA	7q36.2	NR	rs2098112-A	0.472	5E-14		0.013104477	[0.0097-0.0165] unit increase	Affymetrix [NR] (imputed)	N
1756	chr7	153487943	153487944	rs2098112	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking cessation (MTAG)	up to 820,192 European ancestry individuals	NA	7q36.2	NR	rs2098112-A	0.478	4E-8		0.00847816	[0.0054-0.0115] unit increase	NR [9732723] (imputed)	N
1756	chr7	153489068	153489069	rs2622237	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Alcohol consumption (drinks per week)	414,343 European ancestry individuals	NA	7q36.2	LOC101929087	rs2622237-A	0.5765	2E-11		0.015079147	[0.011-0.02] unit decrease	Affymetrix [11514936] (imputed)	N
1756	chr7	153489068	153489069	rs2622237	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	7q36.2	NR	rs2622237-G	0.414	5E-9		0.00662846	[0.0044-0.0088] unit increase	NR [9732723] (imputed)	N
1756	chr7	153489073	153489074	rs2533200	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Problematic alcohol use	435,563 European ancestry individuals	NA	7q36.2	DPP6	rs2533200-C	0.5163	2E-8		5.631	[NR] z score decrease	Affymetrix [14069427] (imputed)	N
1756	chr7	153489724	153489725	rs6969458	33563987	Tyrrell J	2021-02-09	Nat Commun	Genetic predictors of participation in optional components of UK Biobank.	Acceptance of an invitation to participate in a mental health questionnaire	146,074 European ancestry cases, 148,713 European ancestry controls	NA	7q36.2	NR	rs6969458-G	0.53	3E-8		1.03	[1.02, 1.03]	Affymetrix [39302896] (imputed)	N
1756	chr7	153489724	153489725	rs6969458	31358974	Evangelou E	2019-07-29	Nat Hum Behav	New alcohol-related genes suggest shared genetic mechanisms with neuropsychiatric disorders.	Alcohol consumption	480,842 European ancestry individuals	NA	7q36.2	DPP6	rs6969458-A	0.47	6E-14		0.008	[0.006-0.01] unit increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1756	chr7	153489724	153489725	rs6969458	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Alcohol consumption (drinks per week)	up to 357,854 European ancestry individuals	NA	7q36.2	DPP6	rs6969458-A	0.466	2E-11		0.017	[0.012-0.022] unit increase	Illumina [~ 250000] (imputed)	N
1756	chr7	153489724	153489725	rs6969458	29970889	Day FR	2018-07-03	Nat Commun	Elucidating the genetic basis of social interaction and isolation.	Regular attendance at a pub or social club	124,047 European ancestry cases, 328,255 European ancestry controls	NA	7q36.2	DPP6	rs6969458-G	0.532648	4E-15		0.007246	[0.0054-0.0091] unit decrease	NR [NR] (imputed)	N
1756	chr7	153489743	153489744	rs6951574	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	7q36.2	NR	rs6951574-C	0.458	9E-23		0.0135261	[0.011-0.016] unit increase	NR [~ 9732723] (imputed)	N
1756	chr7	153489743	153489744	rs6951574	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week)	up to 941,280 European ancestry individuals	NA	7q36.2	NR	rs6951574-C	0.458	2E-19		0.013222216	[0.01-0.016] unit increase	NR [~ 10000000] (imputed)	N
1756	chr7	153489743	153489744	rs6951574	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	7q36.2		rs6951574-?	NR	6E-11				NR [~ 8900000] (imputed)	N
1756	chr7	153495422	153495423	rs2622102	33563987	Tyrrell J	2021-02-09	Nat Commun	Genetic predictors of participation in optional components of UK Biobank.	Percentage of invited food questionnaires completed	300,639 European ancestry individuals	NA	7q36.2	NR	rs2622102-A	0.52	5E-11		0.6	[0.42-0.78] unit increase	Affymetrix [39302896] (imputed)	N
1756	chr7	153535688	153535689	rs2110267	23527680	Ebejer JL	2013-04-01	Twin Res Hum Genet	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (hyperactivity-impulsivity symptoms)	1,851 individuals	155 individuals	7q36.2	NR	rs2110267-C		5E-7				Illumina [2373249] (imputed)	N
1756	chr7	153535688	153535689	rs2110267	23527680	Ebejer JL	2013-04-01	Twin Res Hum Genet	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (combined symptoms)	1,851 individuals	155 individuals	7q36.2	NR	rs2110267-C		6E-6				Illumina [2373249] (imputed)	N
1756	chr7	153548313	153548314	rs56325297	32121467	Adewuyi EO	2020-02-29	Genes (Basel)	Shared Molecular Genetic Mechanisms Underlie Endometriosis and Migraine Comorbidity.	Endometriosis or migraine	17,054 European and Japanese ancestry endometriosis cases, 29,208 European ancestry migraine cases, 191,858 European and Japanese ancestry controls, 172,931 European ancestry controls	NA	7q36.2	NR	rs56325297-T	NR	8E-7	(random effect)	1.1111112	NR	NR [6904914] (imputed)	N
1756	chr7	153549295	153549296	rs2192271	23527680	Ebejer JL	2013-04-01	Twin Res Hum Genet	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (hyperactivity-impulsivity symptoms)	1,851 individuals	155 individuals	7q36.2	NR	rs2192271-T		1E-6				Illumina [2373249] (imputed)	N
1756	chr7	153553063	153553064	rs6947495	23527680	Ebejer JL	2013-04-01	Twin Res Hum Genet	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (hyperactivity-impulsivity symptoms)	1,851 individuals	155 individuals	7q36.2	NR	rs6947495-A		1E-6				Illumina [2373249] (imputed)	N
1756	chr7	153558948	153558949	rs12671878	23527680	Ebejer JL	2013-04-01	Twin Res Hum Genet	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (hyperactivity-impulsivity symptoms)	1,851 individuals	155 individuals	7q36.2	NR	rs12671878-A		1E-6				Illumina [2373249] (imputed)	N
1756	chr7	153576873	153576874	rs142468071	28203683	Heit JA	2017-02-16	Thromb Haemost	Identification of unique venous thromboembolism-susceptibility variants in African-Americans.	Venous thromboembolism adjusted for sickle cell variant rs77121243-T	393 African American cases, 4,941 African American controls.	NR	7q36.2	DPP6	rs142468071-C	0.013	3E-6		3.365	[2.028-5.581]	Affymetrix, Illumina [14074516] (imputed)	N
1756	chr7	153578415	153578416	rs38989	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	7q36.2	NR	rs38989-G	0.405296777978339	7E-6	(IGP52)	0.1524	[0.086-0.219] unit decrease	Illumina [~ 2500000] (imputed)	N
1756	chr7	153595989	153595990	rs11772011	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Chronic lymphocytic leukemia	764 White British ancestry cases, 272,079 White British ancestry controls	NA	7q36.2		rs11772011-?	NR	5E-6		1.75122	[1.51-1.99]	NR [663083]	N
1756	chr7	153613113	153613114	rs112631680	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota (bacterial taxa)	858 Metropolitan French ancestry individuals	NA	7q36.2	NR	rs112631680-?	NR	4E-8	(Eubacterium_ventriosum)	2.3419313	[2.04-2.65]	Illumina [5293637] (imputed)	N
1757	chr7	153625842	153625843	rs6464375	20686608	Low SK	2010-07-29	PLoS One	Genome-wide association study of pancreatic cancer in Japanese population.	Pancreatic cancer	991 Japanese ancestry cases, 5,209 Japanese ancestry controls	NA	7q36.2	DPP6	rs6464375-A	0.10	4E-7	(recessive)	3.73	[2.24-6.21]	Illumina [420236]	N
1757	chr7	153746765	153746766	rs866701094	34620984	Skuladottir AT	2021-10-07	Commun Biol	A genome-wide meta-analysis uncovers six sequence variants conferring risk of vertigo.	Vertigo	48,072 European ancestry cases, 894,541 European ancestry controls	NA	7q36.2		rs866701094-A	NR	4E-6		3.70025		Affymetrix, Illumina [62056310] (imputed)	N
1758	chr7	153748947	153748948	rs140810004	30954325	Kamboh MI	2019-03-11	Neurobiol Aging	Population-based genome-wide association study of cognitive decline in older adults free of dementia: identification of a novel locus for the attention domain.	Age-related cognitive decline (visuospatial skill) (slope of z-scores)	1,145 European ancestry individuals	NA	7q36.2	DPP6	rs140810004-T	0.39	7E-6		0.23	unit decrease	Illumina [5600000] (imputed)	N
1758	chr7	153754744	153754745	rs12534254	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	7q36.2	AC006019.3, DPP6	rs12534254-C	0.815	6E-6		0.0474	[0.027-0.068] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1758	chr7	153803037	153803038	rs4067493	28358823	Kim SK	2017-03-30	PLoS One	Genome-wide association screens for Achilles tendon and ACL tears and tendinopathy.	Anterior cruciate ligament rupture	495 European ancestry cases, 54 Latin-American cases, 49 East Asian ancestry cases, 82,769 European ancestry controls, 8,506 Latin-American controls, 7,469 East Asian ancestry controls		7q36.2	NR	rs4067493-G	NR	2E-7		1.94	[1.69-2.19]	Affymetrix [8303052] (imputed)	N
1760	chr7	154072019	154072020	rs6977820	21826085	Tanaka S	2011-08-09	Pharmacogenomics J	DPP6 as a candidate gene for neuroleptic-induced tardive dyskinesia.	Tardive dyskinesia	61 Japanese ancestry schizophrenic cases, 61 Japanese ancestry cases schizophrenic controls	36 Japanese ancestry schizophrenic cases, 138 Japanese ancestry schizophrenic controls	7q36.2	DPP6	rs6977820-?	NR	5E-6		2.32	[1.61-3.34]	Illumina [257704]	N
1760	chr7	154118003	154118004	rs286828	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	7q36.2	PAXIP1	rs286828-?	NR	8E-6	(PC 38:3)	0.31629768	[0.18-0.46] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1760	chr7	154138040	154138041	rs55913432	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7q36.2	NR	rs55913432-C	0.0122	2E-8	(PRSS1)	0.1943	NR unit increase	Illumina [1671387] (imputed)	N
1761	chr7	154169001	154169002	rs6977715	27490719	Bacelis J	2016-08-04	PLoS One	Literature-Informed Analysis of a Genome-Wide Association Study of Gestational Age in Norwegian Women and Children Suggests Involvement of Inflammatory Pathways.	Gestational age at birth in premature rupture of membrane-initiated deliveries (maternal effect)	336 Norwegian ancestry mothers	NA	7q36.2	DPP6	rs6977715-A		5E-7				NR [525577]	N
1761	chr7	154209857	154209858	rs12668377	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Thalamus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	7q36.2	DPP6	rs12668377-?		3E-6				Illumina [4322238] (imputed)	N
1761	chr7	154210797	154210798	rs10260404	18987618	Cronin S	2008-11-05	Eur J Hum Genet	Screening for replication of genome-wide SNP associations in sporadic ALS.	Amyotrophic lateral sclerosis	958 European ancestry cases, 932 European ancestry controls	309 European ancestry cases, 404 European ancestry controls	7q36.2	DPP6	rs10260404-C	0.35	3E-6		1.37	[1.20-1.56]	Illumina [287522]	N
1761	chr7	154210797	154210798	rs10260404	18084291	van Es MA	2007-12-16	Nat Genet	Genetic variation in DPP6 is associated with susceptibility to amyotrophic lateral sclerosis.	Amyotrophic lateral sclerosis	737 European ancestry cases, 721 European ancestry controls	1,030 European ancestry cases, 1,195 European ancestry controls	7q36.2	DPP6	rs10260404-C	0.35	5E-8		1.3	[1.18-1.43]	Illumina [311946]	N
1761	chr7	154210797	154210798	rs10260404	18057069	Cronin S	2007-12-07	Hum Mol Genet	A genome-wide association study of sporadic ALS in a homogenous Irish population.	Amyotrophic lateral sclerosis	221 Genetically Homogenous Irish cases, 211 Genetically Homogenous Irish controls	737 European ancestry cases, 721 European ancestry controls	7q36.2	DPP6	rs10260404-?	0.37	3E-6		1.37	[1.20-1.56]	Illumina [497917]	N
1761	chr7	154263392	154263393	rs11762096	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	7q36.2	NR	rs11762096-?	NR	2E-8				Illumina [7760689] (imputed)	N
1762	chr7	154376302	154376303	rs146779282	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Coronary artery disease in diabetes	361 Korean ancestry cases, 4,951 Korean ancestry controls	NA	7q36.2		rs146779282-C	0.01299	9E-6		2.983	[1.844-4.826]	Affymetrix [7975321] (imputed)	N
1762	chr7	154379233	154379234	rs11243354	26545240	Giri A	2015-11-06	PLoS One	Genetic Determinants of Pelvic Organ Prolapse among African American and Hispanic Women in the Women's Health Initiative.	Pelvic organ prolapse	793 African American cases, 948 African American controls, 606 Hispanic cases, 305 Hispanic controls	NA	7q36.2	DPP6	rs11243354-C	0.45	5E-7		1.36		Affymetrix [at least 730985] (imputed)	N
1762	chr7	154381474	154381475	rs6947471	26545240	Giri A	2015-11-06	PLoS One	Genetic Determinants of Pelvic Organ Prolapse among African American and Hispanic Women in the Women's Health Initiative.	Pelvic organ prolapse	793 African American cases, 948 African American controls, 606 Hispanic cases, 305 Hispanic controls	NA	7q36.2	DPP6	rs6947471-T	0.43	7E-6		1.32		Affymetrix [at least 730985] (imputed)	N
1762	chr7	154388428	154388429	rs7385760	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	7q36.2	intergenic	rs7385760-T	NR	8E-6				Illumina [up to 11995908] (imputed)	N
1763	chr7	154406580	154406581	rs12667032	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	7q36.2	DPP6	rs12667032-A	0.1522	1E-15		7.994	[NR] z score increase	Affymetrix, Illumina [~ 11000000] (imputed)	N
1763	chr7	154406580	154406581	rs12667032	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Myopia (age of diagnosis)	104,293 European ancestry individuals	NA	7q36.2	NR	rs12667032-A	0.0137	1E-26		0.9345	[0.76-1.11] unit increase	Illumina [~ 10600000] (imputed)	N
1763	chr7	154431549	154431550	rs1979600	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Coprococcus)	1,068 Japanese ancestry individuals	NA	7q36.2	DPP6	rs1979600-A	0.28	3E-6	(male)	0.0558	[0.033-0.079] unit increase	Illumina [6380737] (imputed)	N
1763	chr7	154436573	154436574	rs58974557	33824429	Fjukstad KK	2021-04-06	Pharmacogenomics J	Genetic variants associated with cardiometabolic abnormalities during treatment with selective serotonin reuptake inhibitors: a genome-wide association study.	LDL levels x SSRI levels (escitalopram or citalopram) interaction in schizophrenia or bipolar disorder	181 European ancestry individuals	NA	7q36.2	DPP6	rs58974557-G	NR	2E-6		15.489	[9.44-21.54] unit decrease	Illumina [NR] (imputed)	N
1763	chr7	154460659	154460660	rs118189482	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	7q36.2	DPP6	rs118189482-T	0.014	4E-7		0.247	NR unit decrease	Illumina [NR] (imputed)	N
1763	chr7	154476371	154476372	rs62475193	32117412	Boua PR	2020-02-07	Front Genet	Novel and Known Gene-Smoking Interactions With cIMT Identified as Potential Drivers for Atherosclerosis Risk in West-African Populations of the AWI-Gen Study.	Carotid intima media thickness x smoking interaction	465 West African ancestry male smokers, 1,311 West African ancestry male non-smokers	NA	7q36.2	DPP6	rs62475193-G	NR	2E-6		4.792	NR z score decrease	Illumina [7839440] (imputed)	N
1763	chr7	154487710	154487711	rs13228257	34684344	Zhang Z	2021-09-24	Nutrients	Vitamin D and the Risks of Depression and Anxiety: An Observational Analysis and Genome-Wide Environment Interaction Study.	Anxiety score x vitamin D interaction	110,023 European ancestry individuals	NA	7q36.2		rs13228257-?	NR	1E-8		1.25	[0.82-1.68] unit decrease	Affymetrix [NR] (imputed)	N
1763	chr7	154507299	154507300	rs1387192	32890573	Yan Q	2020-09-02	J Allergy Clin Immunol	A genome-wide association study of asthma hospitalizations in adults.	Exacerbations requiring hospitalisation in asthma	1,658 British ancestry cases, 32,509 British ancestry controls	NA	7q36.2	NR	rs1387192-G	0.54	6E-6		1.17	[NR]	Affymetrix [87696888] (imputed)	N
1763	chr7	154509323	154509324	rs12666280	23534349	Jeff JM	2013-03-28	Ann Hum Genet	Generalization of variants identified by genome-wide association studies for electrocardiographic traits in African Americans.	QT interval	455 African American individuals	NA	7q36.2	DPP6	rs12666280-C		2E-6		8.93	[NR] ms increase	Illumina [> 930000]	N
1763	chr7	154516380	154516381	rs10224371	34639784	Chen TH	2021-10-06	Int J Environ Res Public Health	The Mediation Effects of Aluminum in Plasma and Dipeptidyl Peptidase Like Protein 6 (DPP6) Polymorphism on Renal Function via Genome-Wide Typing Association.	Aluminium levels	494 Han Chinese ancestry individuals	NA	7q36.2		rs10224371-?	NR	8E-8				NR [615681]	N
1763	chr7	154522643	154522644	rs547894	29855589	Chernus J	2018-05-31	Sci Rep	GWAS reveals loci associated with velopharyngeal dysfunction.	Velopharyngeal dysfunction	54 Hispanic or Latin American and unknown ancestry cases, 922 Hispanic or Latin American and unknown ancestry controls	NA	7q36.2	NR	rs547894-?	NR	9E-6		0.08935993	[NR] unit decrease	Illumina [at least 269494] (imputed)	N
1764	chr7	154592865	154592866	rs71534169	24677629	Wolf EJ	2014-03-27	Depress Anxiety	A genome-wide association study of clinical symptoms of dissociation in a trauma-exposed sample.	Post-traumatic stress disorder	484 European ancestry trauma-exposed individuals	NA	7q36.2	DPP6	rs71534169-?		4E-6		1.63	[0.94-2.32] unit increase	Illumina [1197702]	N
1764	chr7	154622456	154622457	rs2316527	26025128	Park HW	2015-05-27	J Allergy Clin Immunol	Genetic risk factors for decreased bone mineral accretion in children with asthma receiving multiple oral corticosteroid bursts.	Bone mineral accretion in asthma (oral corticosteroid dose interaction)	489 European ancestry children	NA	7q36.2	DPP6	rs2316527-?		8E-8				Illumina [NR]	N
1764	chr7	154645533	154645534	rs140460765	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Lung cancer	2,479 White British ancestry cases, 272,351 White British ancestry controls	NA	7q36.2		rs140460765-?	NR	4E-6		4.50135	[3.86-5.14]	NR [673172]	N
1765	chr7	154680359	154680360	rs73169094	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Lean body mass	3,399 whole genome sequenced individuals, 11,801 European ancestry individuals	10,676 European ancestry individuals	7q36.2	DPP6	rs73169094-C	0.9613	3E-8		0.177	[0.11-0.24] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1765	chr7	154680909	154680910	rs12534701	24743840	Figueiredo JC	2014-04-17	PLoS Genet	Genome-wide diet-gene interaction analyses for risk of colorectal cancer.	Colorectal cancer (diet interaction)	9,287 European ancestry cases, 9,117 European ancestry controls	NA	7q36.2	DPP6	rs12534701-?	0.54-0.62	2E-6	(Fiber)	1.17	[1.09-1.24]	Affymetrix, Illumina [> 2700000] (imputed)	N
1765	chr7	154736712	154736713	rs11344042	30894546	Ivarsdottir EV	2019-03-20	Nat Commun	Sequence variation at ANAPC1 accounts for 24% of the variability in corneal endothelial cell density.	Corneal endothelial cell size variation coefficient	6,125 Icelandic ancestry individuals	NA	7q36.2	NR	rs11344042-CTTTTT		9E-7		0.101	[NR] unit decrease	Illumina [NR]	N
1765	chr7	154739230	154739231	rs2293259	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	7q36.2	Intergenic	rs2293259-A	0.3041	2E-8	(MTAG)	0.0141	[0.0092-0.019] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1766	chr7	154851727	154851728	rs74997117	28762467	Wadelius M	2017-08-01	Clin Pharmacol Ther	Sulfasalazine-Induced Agranulocytosis Is Associated With the Human Leukocyte Antigen Locus.	Sulfasalazine-induced agranulocytosis	36 European ancestry cases, 5,170 European ancestry untreated controls	NA	7q36.2	intergenic	rs74997117-?	NR	3E-7		5.32	[2.81-10.06]	Illumina [9380034] (imputed)	N
1766	chr7	154900856	154900857	rs2969540	24662972	Figueroa JD	2014-03-24	Carcinogenesis	Genome-wide interaction study of smoking and bladder cancer risk.	Bladder cancer (smoking interaction)	560 European ancestry never smoker cases, 2,442 European ancestry ever smoker cases, 1,406 European ancestry never smoker controls, 3,005 European ancestry ever smoker controls	494 European ancestry never smoker cases, 1,927 European ancestry ever smoker cases, 2,257 European ancestry never smoker controls, 3,490 European ancestry ever smoker controls	7q36.2	HTR5A, PAXIP1, INSIG1	rs2969540-?	NR	2E-6	(multiplicative, retrospective analysis)			Illumina [491011]	N
1767	chr7	154946275	154946276	rs7795216	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Sucrose liking	686 European ancestry twins	NA	7q36.2	RN7SKP280	rs7795216-G	0.14	4E-6		0.59	[0.34-0.84] unit increase	Illumina [5833901] (imputed)	N
1767	chr7	154962270	154962271	rs186480715	31560688	Geidenstam N	2019-09-27	PLoS One	Using metabolite profiling to construct and validate a metabolite risk score for predicting future weight gain.	Uridine levels	1,937 individuals	NA	7q36.2	intergenic	rs186480715-G	0.997	6E-7		1.7709	[1.08-2.47] unit increase	Affymetrix, Illumina [up to 22000000] (imputed)	N
1767	chr7	154970468	154970469	rs10263087	22648509	Wang KS	2012-05-31	J Mol Neurosci	PKNOX2 is associated with formal thought disorder in schizophrenia: a meta-analysis of two genome-wide association studies.	Formal thought disorder in schizophrenia	835 European ancestry cases, 2,694 European ancestry controls	NA	7q36.2	INSIG1	rs10263087-C	0.09	7E-6		1.547	[NR]	Affymetrix [729454]	N
1767	chr7	155006511	155006512	rs12534332	30843173	Popovic M	2019-03-07	J Endocrinol Invest	Genome-wide meta-analysis identifies novel loci associated with free triiodothyronine and thyroid-stimulating hormone.	Triiodothyronine levels and thyroxine levels	Up to 1,729 Croatian, Korculan (founder/genetic isolate) and Vis (founder/genetic isolate) individuals	NA	7q36.3	INSIG1	rs12534332-A	0.69	1E-6		0.021	[0.013-0.029] unit increase	Illumina [7411206] (imputed)	N
1767	chr7	155008712	155008713	rs1561176	23903073	Kim HN	2013-08-01	J Hum Genet	Genome-wide association study of the five-factor model of personality in young Korean women.	Personality dimensions	1,089 Korean ancestry females	2,090 Korean ancestry individuals	7q36.3	HTR5A	rs1561176-G		7E-6	(Openness)	0.06	[0.0012-0.1188] unit decrease	Illumina [2053685] (imputed)	N
1767	chr7	155017262	155017263	rs76582140	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (basophil)	21,347 Hispanic or Latin American individuals	NA	7q36.3		rs76582140-A	0.9181	7E-6		0.1014	[0.057-0.146] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1767	chr7	155018929	155018930	rs6953837	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	7q36.3	NR	rs6953837-A	NR	7E-6		1.06	[NR]	Illumina [7158791] (imputed)	N
1767	chr7	155019432	155019433	rs138074947	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	7q36.3	INSIG1	rs138074947-C	7.72587834613591E-4	4E-6		0.04781	[NR] unit increase	Affymetrix [> 30000000] (imputed)	N
1767	chr7	155026806	155026807	rs4374942	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	7q36.3	NR	rs4374942-C	NR	3E-9		0.0266	[0.018-0.035] unit increase	Affymetrix [9000000] (imputed)	N
1767	chr7	155026806	155026807	rs4374942	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	7q36.3	NR	rs4374942-T	0.925872	1E-12		0.0259845	[0.019-0.033] unit decrease	Affymetrix [15000001]	N
1768	chr7	155072196	155072197	rs62471607	28476931	Piaggi P	2017-05-05	Diabetes	A Genome-Wide Association Study Using a Custom Genotyping Array Identifies Variants in GPR158 Associated With Reduced Energy Expenditure in American Indians.	Energy expenditure (24h)	419 Pima Indian ancestry individuals	NA	7q36.3	HTR5A, INSIG1	rs62471607-T	0.34	3E-6		53.02256	[30.9-75.15] kcal/day decrease	Affymetrix [491265]	N
1768	chr7	155072618	155072619	rs76742446	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	7q36.3	Intergenic	rs76742446-T	0.993	1E-6	(AA)	0.249	NR unit increase	Illumina [NR] (imputed)	N
1768	chr7	155086438	155086439	rs9720071	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Stable angina pectoris	18,833 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	7q36.3		rs9720071-C	0.257026352	2E-8		0.08110178	[0.053-0.109] unit decrease	Illumina [13427711] (imputed)	N
1768	chr7	155086438	155086439	rs9720071	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Coronary artery disease	29,319 Japanese ancestry cases, 183,134 Japanese ancestry controls	2,855 Japanese ancestry cases, 15,211 Japanese ancestry controls	7q36.3		rs9720071-?	NR	3E-8		0.9370736	[0.915764750915661-0.958878293438425]	Illumina [8919992] (imputed)	N
1768	chr7	155086665	155086666	rs34021161	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	7q36.3		rs34021161-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1768	chr7	155092410	155092411	rs9690044	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	7q36.3		rs9690044-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1768	chr7	155101685	155101686	rs191603973	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	7q36.3	Intergenic	rs191603973-C	NR	7E-7	(between families)	4.962	unit decrease	Affymetrix [up to 15107142] (imputed)	N
1768	chr7	155106434	155106435	rs183893980	29678681	Matana A	2018-04-18	Genomics	Genome-wide meta-analysis identifies novel gender specific loci associated with thyroid antibodies level in Croatians.	Plasma anti-thyroglobulin levels	1,596 Croatian ancestry women, 1,033 Croatian ancestry men	NA	7q36.3	INSIG1	rs183893980-A	NR	9E-7	(women)	0.233	[0.14-0.33] unit increase	Illumina [5527232] (imputed)	N
1768	chr7	155106434	155106435	rs183893980	29678681	Matana A	2018-04-18	Genomics	Genome-wide meta-analysis identifies novel gender specific loci associated with thyroid antibodies level in Croatians.	Plasma anti-thyroglobulin and anti-thyroid peroxidase levels (bivariate analysis)	up to 1,596 Croatian ancestry women, up to 1,033 Croatian ancestry men	NA	7q36.3	INSIG1	rs183893980-?	NR	3E-6	(women)	0.027	[0.015-0.039] unit increase	Illumina [5527232] (imputed)	N
1768	chr7	155106563	155106564	rs151227923	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Stem cell growth factor beta levels	3,682 Finnish ancestry individuals	NA	7q36.3	NR	rs151227923-C		5E-6		0.1143	[0.065-0.163] SD units decrease	NR [10700000] (imputed)	N
1768	chr7	155106569	155106570	rs140365914	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque score in type 2 diabetes	691 African American individuals	205 African American individuals	7q36.3	intergenic	rs140365914-?	NR	3E-6		0.502	[0.2-0.81] unit decrease	Illumina [at least 13000000] (imputed)	N
1768	chr7	155110949	155110950	rs143254203	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (underestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	7q36.3	NR	rs143254203-?	NR	8E-10		6.145	NR z score decrease	Illumina [at least 830937] (imputed)	N
1768	chr7	155111267	155111268	rs139156430	34162658	Quinn MC	2021-06-23	Cancer Epidemiol Biomarkers Prev	Identification of a locus near ULK1 associated with progression-free survival in ovarian cancer.	Progression free survival in epithelial ovarian cancer treated with carboplatin and paclitaxel	2,352 European ancestry individuals	NA	7q36.3	NR	rs139156430-C		8E-6		0.402	[0.23-0.58] unit decrease	Illumina [12764477] (imputed)	N
1768	chr7	155118469	155118470	rs36182340	35115690	Lopera-Maya EA	2022-02-03	Nat Genet	Effect of host genetics on the gut microbiome in 7,738 participants of the Dutch Microbiome Project.	Gut bacterial pathway abundance (P105.PWY..TCA.cycle.IV..2.oxoglutarate.decarboxylase.)	7,738 European ancestry individuals	NA	7q36.3		rs36182340-G	0.096788696210662	2E-8		0.2358773	[0.15-0.32] unit increase	Illumina [5584686] (imputed)	N
1768	chr7	155176326	155176327	rs77134441	33831438	Williams JE	2021-04-05	Genomics	Key genetic variants associated with variation of milk oligosaccharides from diverse human populations.	Human milk oligosaccharide concentration (lacto-N-fucopentaose III) in secretors	305 European, Sub-Saharan African, Hispanic or unknown ancestry individuals	NA	7q36.3		rs77134441-?	NR	4E-9				Illumina [1128286]	N
1768	chr7	155178229	155178230	rs13245215	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	7q36.3	NR	rs13245215-A	0.279	6E-6	(IFNAR2_of_CD56dimCD16p)			Illumina [5084123] (imputed)	N
1768	chr7	155182325	155182326	rs2058950	29234017	Carayol J	2017-12-12	Nat Commun	Protein quantitative trait locus study in obesity during weight-loss identifies a leptin regulator.	Protein levels in obesity	494 European ancestry individuals	NA	7q36.3	NR	rs2058950-?	NR	7E-8	(TGF-b3)	0.1	[0.061-0.139] unit increase	Illumina [4020654] (imputed)	N
1769	chr7	155224714	155224715	rs61510607	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	7q36.3	Intergenic	rs61510607-T	NR	5E-7	(between families)	5.012	unit decrease	Affymetrix [up to 15107142] (imputed)	N
1769	chr7	155260560	155260561	rs12698418	33204752	Butler-Laporte G	2020-09-24	Open Forum Infect Dis	Genetic Determinants of Antibody-Mediated Immune Responses to Infectious Diseases Agents: A Genome-Wide and HLA Association Study.	Cytomegalovirus pp28 antibody levels	5,087 White British ancestry individuals	NA	7q36.3	EN2	rs12698418-G	0.248	4E-8		0.13	[0.083-0.177] unit increase	NR [25472218] (imputed)	N
1769	chr7	155285134	155285135	rs1861960	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NA	7q36.3	intergenic	rs1861960-T	0.2	6E-6		1.07	[1.04-1.10]	Affymetrix, Illumina [~ 2300000] (imputed)	N
1769	chr7	155287013	155287014	rs28579821	30217807	Robinson-Cohen C	2018-09-14	J Am Soc Nephrol	Genetic Variants Associated with Circulating Fibroblast Growth Factor 23.	Circulating fibroblast growth factor 23 levels	16,624 European ancestry individuals	4,443 African ancestry individuals	7q36.3	CNPY1	rs28579821-T	0.2808	4E-7	(EA)	0.0325	[0.021-0.044] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1769	chr7	155301892	155301893	rs1421320	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	7q36.3	EN2	rs1421320-?	NR	1E-6	(oxalate)	0.30402616	[0.18-0.43] unit increase	Affymetrix [at least 2500000] (imputed)	N
1769	chr7	155307529	155307530	rs138574591	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		CNPY1	rs138574591-?	NR	2E-8	(female)	1.96359	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1770	chr7	155400894	155400895	rs6948772	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal cancer	978 Austrian ancestry colorectal cancer cases, 636 Austrian ancestry advanced colorectal adenoma cases, 4,294 European ancestry controls	NA	7q36.3	Intergenic	rs6948772-?		4E-6		1.2532898	[NR]	Affymetrix [492217] (imputed)	N
1770	chr7	155424886	155424887	rs75434274	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	7q36.3		rs75434274-A	0.9205	9E-9		0.0151	[0.01-0.02] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1770	chr7	155424886	155424887	rs75434274	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	7q36.3	Intergenic	rs75434274-A	0.9205	5E-9	(MTAG)	0.0143	[0.0096-0.019] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1771	chr7	155527703	155527704	rs10261098	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	7q36.3		rs10261098-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1771	chr7	155531079	155531080	rs3735576	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals, 21,077 African American individuals, 33,689 South Asian ancestry individuals, 4,586 Hispanic individuals	354,096 European ancestry individuals, 63,282 African American individuals, 4,792 East Asian ancestry individuals, 22,802 Hispanic individuals, 2,695 Native American ancestry individuals	7q36.3		rs3735576-A	0.7624	1E-8		0.14341885	[0.093-0.194] mmHg decrease	Affymetrix, Illumina [247314] (imputed)	N
1771	chr7	155531079	155531080	rs3735576	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	7q36.3		rs3735576-A	0.8091	7E-11		0.12492146	[0.086-0.164] mmHg decrease	Affymetrix, Illumina [242866] (imputed)	N
1771	chr7	155560119	155560120	rs11505217	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	7q36.3		rs11505217-A	0.8431	2E-8	(conditional-joint)	0.0109	[0.0072-0.0146] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1772	chr7	155600416	155600417	rs1233556	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	7q36.3		rs1233556-?	NR	4E-19				NR [~ 8900000] (imputed)	N
1772	chr7	155605070	155605071	rs9333592	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	7q36.3	NR	rs9333592-T	NR	1E-9		0.0276	[0.019-0.037] unit decrease	Affymetrix [9000000] (imputed)	N
1772	chr7	155607224	155607225	rs138964452	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Alcohol consumption x experiences in childhood (felt loved by family member) interaction	41,648 European ancestry individuals	NA	7q36.3		rs138964452-?	NR	1E-8		2.3923	[1.57-3.22] unit decrease	Affymetrix [NR] (imputed)	N
1772	chr7	155617258	155617259	rs7807296	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	7q36.3	SHH, LOC389602	rs7807296-?	NR	8E-12		0.486	[0.35-0.62] unit increase	Affymetrix [11100000] (imputed)	N
1772	chr7	155619497	155619498	rs288766	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Creatinine levels	110,051 European ancestry individuals	NA	7q36.3		rs288766-A	0.351138	1E-10		0.0240336	[0.017-0.031] unit decrease	NR [11722792] (imputed)	N
1772	chr7	155619497	155619498	rs288766	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	7q36.3		rs288766-T	NR	8E-27		0.0217	[0.018-0.026] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
1772	chr7	155630044	155630045	rs1151791	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	7q36.3	NR	rs1151791-G	NR	9E-10		0.03	[0.02-0.04] unit increase	Affymetrix [9000000] (imputed)	N
1772	chr7	155633555	155633556	rs288762	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in non-diabetics	152,624 European ancestry individuals, 36,369 African American individuals	NA	7q36.3	SHH	rs288762-T	0.388	2E-11		0.363	[0.26-0.47] unit increase	Affymetrix [NR] (imputed)	N
1772	chr7	155633555	155633556	rs288762	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	7q36.3	SHH	rs288762-T	0.3559	4E-6	(EA)	0.0017	[0.00092-0.00248] unit increase	Affymetrix [NR] (imputed)	N
1772	chr7	155633555	155633556	rs288762	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	7q36.3	SHH	rs288762-T	0.341	8E-9		0.0018	[0.0012-0.0024] unit increase	Affymetrix [NR] (imputed)	N
1772	chr7	155641707	155641708	rs1225381	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Corpus callosum central volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	7q36.3	NR	rs1225381-?		5E-6				Illumina [4322238] (imputed)	N
1772	chr7	155643325	155643326	rs1225387	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	7q36.3	NR	rs1225387-G	NR	8E-18		0.0232	[0.018-0.028] unit decrease	Affymetrix [9000000] (imputed)	N
1772	chr7	155655692	155655693	rs34044649	26121980	Chauhan L	2015-06-30	BMC Genomics	Genome-wide association analysis identified splicing single nucleotide polymorphism in CFLAR predictive of triptolide chemo-sensitivity.	Triptolide cytotoxicity	55 European ancestry lymphoblastoid cell lines	NA	7q36.3	intergenic	rs34044649-?	NR	6E-6		0.57	unit decrease	Affymetrix, Illumina, Perlegen [at least 1978803] (imputed)	N
1772	chr7	155664685	155664686	rs6971211	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	7q36.3	NR	rs6971211-T	0.41	7E-9		0.0114	[0.0075-0.0153] unit increase	NR [NR]	N
1772	chr7	155664685	155664686	rs6971211	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	7q36.3	SHH	rs6971211-T	0.4092	1E-21		0.0029	[0.0021-0.0037] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
1772	chr7	155664685	155664686	rs6971211	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	7q36.3	SHH	rs6971211-C	0.5796	2E-16		8.256	NR z score increase	Illumina [26237160] (imputed)	N
1772	chr7	155664685	155664686	rs6971211	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	7q36.3	SHH	rs6971211-?	NR	7E-13				Affymetrix, Illumina [at least 5248638] (imputed)	N
1772	chr7	155664685	155664686	rs6971211	28452372	Gorski M	2017-04-28	Sci Rep	1000 Genomes-based meta-analysis identifies 10 novel loci for kidney function.	Glomerular filtration rate (creatinine)	110,517 European ancestry individuals		7q36.3	AC005534.6	rs6971211-?	NR	7E-8				Affymetrix, Illumina [up to 10971307] (imputed)	N
1772	chr7	155665302	155665303	rs73488277	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	7q36.3	NR	rs73488277-T	NR	3E-13		0.0255	[0.019-0.032] unit decrease	Affymetrix [9000000] (imputed)	N
1772	chr7	155665302	155665303	rs73488277	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	7q36.3	NR	rs73488277-T	NR	5E-13		0.0254	[0.019-0.032] unit increase	Affymetrix [9000000] (imputed)	N
1772	chr7	155665958	155665959	rs12671694	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	7q36.3	SHH	rs12671694-T	0.5376	1E-23		0.0025	[0.0019-0.0031] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
1772	chr7	155670174	155670175	rs111239279	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	7q36.3	NR	rs111239279-C	NR	8E-22		0.0875	[0.07-0.105] unit increase	Affymetrix [9000000] (imputed)	N
1772	chr7	155670174	155670175	rs111239279	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	7q36.3	NR	rs111239279-C	NR	1E-24		0.0936	[0.076-0.111] unit decrease	Affymetrix [9000000] (imputed)	N
1772	chr7	155670174	155670175	rs111239279	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	7q36.3	NR	rs111239279-C	NR	3E-23		0.0907	[0.073-0.109] unit decrease	Affymetrix [9000000] (imputed)	N
1772	chr7	155672648	155672649	rs898696	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Creatinine levels	142,097 Japanese ancestry individuals	NA	7q36.3	SHH, LOC389602	rs898696-?	NR	2E-8		0.02056	[0.013-0.028] unit decrease novel	Illumina [6108953] (imputed)	N
1772	chr7	155679498	155679499	rs28677138	34353775	Galesloot TE	2021-08-02	Eur Urol Oncol	Genome-wide Meta-analysis Identifies Novel Genes Associated with Recurrence and Progression in Non-muscle-invasive Bladder Cancer.	Progression-free survival in non-muscle-invasive bladder cancer	3,400 European ancestry individuals	NA	7q36.3		rs28677138-T	NR	3E-6		1.61	[1.32-1.97]	Illumina [7582931] (imputed)	N
1772	chr7	155694816	155694817	rs150217026	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	7q36.3	AC021218.2	rs150217026-C	0.0897323506900232	6E-6	(G_unclassified_P_Proteobacteria_HB)	0.377857	[0.21-0.54] unit increase	Illumina [7711310] (imputed)	N
1773	chr7	155715080	155715081	rs6459968	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	7q36.3	RBM33	rs6459968-?	NR	6E-6	(TAG 54:6)	0.16998534	[0.096-0.244] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1773	chr7	155715080	155715081	rs6459968	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	7q36.3	RBM33	rs6459968-?	NR	2E-6	(TAG 54:5)	0.18101472	[0.11-0.25] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1773	chr7	155744302	155744303	rs1870735	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	NA	7q36.3	AC021218.2	rs1870735-C	0.4531	4E-11		0.206	[0.15-0.27] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1773	chr7	155754143	155754144	rs73494224	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7q36.3	NR	rs73494224-A	0.03484	1E-8	(PFKL)	0.1166	NR unit decrease	Illumina [1671387] (imputed)	N
1773	chr7	155762156	155762157	rs6943029	29185836	Chen MH	2017-11-29	Platelets	Exome-chip meta-analysis identifies association between variation in ANKRD26 and platelet aggregation.	Platelet aggregation	3,664 European ancestry individuals, 549 Old Order Amish (founder/genetic isolate) individuals	1,184 European ancestry individuals, 613 African American individuals	7q36.3	SHH	rs6943029-A	0.072	1E-6	(ADP high 2)	0.222	[0.13-0.31] unit increase	Illumina [129094]	N
1773	chr7	155762156	155762157	rs6943029	20526338	Johnson AD	2010-06-06	Nat Genet	Genome-wide meta-analyses identifies seven loci associated with platelet aggregation in response to agonists.	Platelet aggregation	Up to 3,991 European ancestry individuals	Up to 840 African American individuals	7q36.3	SHH	rs6943029-A	0.067	8E-8	(ADP)			Affymetrix, Illumina [~ 2330000] (imputed)	N
1773	chr7	155768748	155768749	rs10267337	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	7q36.3	tcag7.1213	rs10267337-A	0.04	8E-6	(ALT )	0.03	[NR] U/L increase	Illumina [899892]	N
1773	chr7	155778151	155778152	rs75745313	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	7q36.3		rs75745313-A	0.06	7E-14		7.48	z score increase	Affymetrix [9061022] (imputed)	N
1773	chr7	155778151	155778152	rs75745313	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	7q36.3		rs75745313-A	0.06	3E-9		5.94	z score increase	Affymetrix [9061022] (imputed)	N
1773	chr7	155778151	155778152	rs75745313	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	7q36.3		rs75745313-A	0.06	1E-15		8.01	z score increase	Affymetrix [9061022] (imputed)	N
1773	chr7	155778151	155778152	rs75745313	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	7q36.3	NR	rs75745313-A	0.0707	4E-9				NR [9056863] (imputed)	N
1773	chr7	155778151	155778152	rs75745313	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	7q36.3	NR	rs75745313-A	0.0707	1E-11				NR [9056863] (imputed)	N
1773	chr7	155797977	155797978	rs11979341	30818988	Klein M	2019-03-01	Am J Psychiatry	Genetic Markers of ADHD-Related Variations in Intracranial Volume.	Hippocampal volume	24,704 European ancestry individuals	NA	7q36.3	NR	rs11979341-C	NR	7E-11		6.523	NR z score decrease	NR [9145464] (imputed)	N
1773	chr7	155810500	155810501	rs73737676	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	7q36.3	intergenic	rs73737676-A	0.001	1E-6		34.08	[3.52-329.69]	Illumina [1556551]	N
1773	chr7	155826855	155826856	rs77413038	28927378	Qian DC	2017-09-19	BMC Genomics	Genome-wide imaging association study implicates functional activity and glial homeostasis of the caudate in smoking addiction.	Caudate activity during reward	106 individuals	NA	7q36.3	NR	rs77413038-A	0.0661845	9E-6		1.1706738	[0.68-1.66] unit increase	Illumina [at least 621854] (imputed)	N
1773	chr7	155834148	155834149	rs59455052	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	7q36.3	LOC389602	rs59455052-C	0.691952	2E-9		0.011875	[0.008-0.0157] unit increase	NR [13737936] (imputed)	N
1773	chr7	155834148	155834149	rs59455052	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	7q36.3		rs59455052-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1773	chr7	155837294	155837295	rs10226930	23322567	Lopes MC	2013-01-15	Invest Ophthalmol Vis Sci	Identification of a candidate gene for astigmatism.	Corneal astigmatism	22,100 European ancestry individuals		7q36.3	SHH	rs10226930-C	0.07	8E-7		1.375	[NR] unit decrease	Affymetrix, Illumina [2800000] (imputed)	N
1774	chr7	155867442	155867442	rs143016484	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	7q36.3	SHH	rs143016484-A	0.985329	5E-8	(206 ms)	0.144179	[0.091-0.198] unit increase	Affymetrix [10000000] (imputed)	N
1774	chr7	155870219	155870220	rs77562244	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	7q36.3		rs77562244-A	0.0010274	9E-6		0.46434	[0.26-0.67] unit decrease	Affymetrix [15580782] (imputed)	N
1774	chr7	155942185	155942186	rs11771793	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	7q36.3	NR	rs11771793-?	NR	3E-6	(AA)	4.64	[3.88-5.4]	Illumina [905956]	N
1775	chr7	155977315	155977316	rs1181906	28235828	Traglia M	2017-04-03	G3 (Bethesda)	Independent Maternal and Fetal Genetic Effects on Midgestational Circulating Levels of Environmental Pollutants.	Midgestational circulating levels of organochlorine pesticides	329 Hispanic mothers, 273 European ancestry mothers, 122 Asian ancestry mothers, 23 South Asian ancestry mothers, 21 African American mothers, 22 other ancestry mothers	NA	7q36.3	NR	rs1181906-?		6E-6	(T-NONA)	0.17	[0.092-0.248] unit decrease	Affymetrix [629686]	N
1775	chr7	155981910	155981911	rs4717010	34586716	Chen J	2021-09-29	Mol Genet Genomic Med	Heritability and genome-wide association study of blood pressure in Chinese adult twins.	Mean arterial pressure	137 Chinese ancestry twins	NA	7q36.3		rs4717010-?	NR	7E-6				Illumina [7401356] (imputed)	N
1775	chr7	155987459	155987460	rs62481625	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Hepatocyte growth factor levels	8,292 Finnish ancestry individuals	NA	7q36.3	NR	rs62481625-C		1E-6		0.1091	[0.065-0.153] SD units decrease	NR [10700000] (imputed)	N
1775	chr7	156005078	156005079	rs7797990	26242244	Ma Y	2015-08-05	Sci Rep	Association of chromosome 5q21.3 polymorphisms with the exploratory eye movement dysfunction in schizophrenia.	Exploratory eye movement dysfunction in schizophrenia (cognitive search score)	128 Han Chinese ancestry cases	NA	7q36.3	tcag7.1213	rs7797990-?	NR	2E-6		3.548	[2.17-4.93] unit decrease	Illumina [498648]	N
1775	chr7	156022101	156022102	rs11764561	27595289	Goyal RK	2016-09-05	Bone Marrow Transplant	Novel HLA-DP region susceptibility loci associated with severe acute GvHD.	Acute graft versus host disease in bone marrow transplantation (recipient effect)	291 European ancestry recipients with acute graft versus host disease, 288 European ancestry recipients without acute graft versus host disease	NA	7q36.3	Intergenic	rs11764561-?		2E-7				Affymetrix [905761]	N
1775	chr7	156043639	156043640	rs62482377	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Initial pursuit acceleration in psychotic disorders	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases.	NA	7q36.3	LOC285889	rs62482377-?	NR	3E-7	(African)			Illumina [4404269] (imputed)	N
1775	chr7	156043639	156043640	rs62482377	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Initial pursuit acceleration	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	7q36.3	LOC285889	rs62482377-C	0.02961	2E-6	(African)			Illumina [4404269] (imputed)	N
1775	chr7	156044165	156044166	rs11761083	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	7q36.3	NR	rs11761083-?	NR	4E-8	(left caudal anterior cingulate)			NR [9227495] (imputed)	N
1775	chr7	156044991	156044992	rs10949807	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or recurrent major depressive disorder x sex interaction (3df)	31,567 European ancestry schizophrenia cases,19,924 European ancestry bipolar disorder cases, 5,314 European ancestry recurrent major depressive disorder cases, 78,190 European ancestry controls, 1,836 East Asian ancestry schizophrenia cases, 3,383 East Asian ancestry controls	NA	7q36.3	NR	rs10949807-T	NR	6E-6				NR [NR] (imputed)	N
1775	chr7	156044991	156044992	rs10949807	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or major depressive disorder x sex interaction (3df)	31,567 European ancestry schizophrenia cases,19,924 European ancestry  bipolar disorder cases, 15,970 European ancestry major depressive disorder cases, 93,025 European ancestry controls, 1,836 East Asian ancestry schizophrenia cases, 3,383 East Asian ancestry controls	NA	7q36.3	NR	rs10949807-T	NR	5E-6				NR [NR] (imputed)	N
1775	chr7	156045672	156045673	rs12532691	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	7q36.3		rs12532691-A	0.48	3E-11		6.66	z score increase	Affymetrix [9061022] (imputed)	N
1775	chr7	156045672	156045673	rs12532691	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	7q36.3	NR	rs12532691-A	0.4925	2E-9				NR [9056863] (imputed)	N
1775	chr7	156045932	156045933	rs12539900	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia x sex interaction	31,567 European ancestry cases, 37,494 European ancestry controls, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	NA	7q36.3	LOC389602, LOC285889	rs12539900-A	0.587	3E-6		0.1161	[0.067-0.165] unit decrease	NR [NR] (imputed)	N
1775	chr7	156045932	156045933	rs12539900	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia x sex interaction	31,567 European ancestry cases, 37,494 European ancestry controls	NA	7q36.3	LOC389602, LOC285889	rs12539900-A	0.5955	9E-6		0.1117	[0.062-0.161] unit decrease	NR [NR] (imputed)	N
1775	chr7	156045932	156045933	rs12539900	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia	11,361 European ancestry female cases, 18,119 European ancestry female controls, 20,206 European ancestry male cases, 19,375 European ancestry male controls, 686 East Asian ancestry female cases, 1,907 East Asian ancestry female controls, 1,150 East Asian ancestry male cases, 1,476 East Asian ancestry male controls	NA	7q36.3	LOC389602, LOC285889	rs12539900-A	0.587	9E-6	(female)	0.0864	[0.048-0.124] unit decrease	NR [NR] (imputed)	N
1775	chr7	156046267	156046268	rs62482378	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	7q36.3		rs62482378-T	0.48	2E-8		5.58	z score increase	Affymetrix [9061022] (imputed)	N
1775	chr7	156048648	156048649	rs10949808	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	7q36.3	LMBR1	rs10949808-?	NR	6E-7	(TAG 48:1)	0.17009677	[0.1-0.24] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1775	chr7	156048648	156048649	rs10949808	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	7q36.3	LMBR1	rs10949808-?	NR	6E-6	(TAG 46:1)	0.15333991	[0.087-0.22] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1775	chr7	156048648	156048649	rs10949808	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	7q36.3	LMBR1	rs10949808-?	NR	4E-6	(TAG 48:2)	0.15657783	[0.09-0.223] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1775	chr7	156048648	156048649	rs10949808	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	7q36.3	LMBR1	rs10949808-?	NR	1E-7	(TAG 50:2)	0.17876932	[0.11-0.25] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1775	chr7	156048648	156048649	rs10949808	20889312	Wang KS	2010-10-01	Schizophr Res	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	7q36.3	LOC393076	rs10949808-?	NR	1E-7		1.2699	[NR]	Affymetrix [722112]	N
1775	chr7	156054153	156054154	rs13242255	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	7q36.3	NR	rs13242255-G	0.4829	2E-9				NR [9056863] (imputed)	N
1775	chr7	156066470	156066471	rs11763338	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	7q36.3	NR	rs11763338-?	NR	6E-10	(cerebellar vermal lobules I V)			NR [9227495] (imputed)	N
1775	chr7	156066864	156066865	rs11764163	35079123	Chambers T	2022-01-25	Mol Psychiatry	Genetic common variants associated with cerebellar volume and their overlap with mental disorders: a study on 33,265 individuals from the UK-Biobank.	Total cerebellar volume (excluding Crus I vermis)	33,265 European ancestry individuals	NA	7q36.3		rs11764163-A	NR	1E-9		0.0336	[0.023-0.044] unit increase	Affymetrix [6193476] (imputed)	N
1775	chr7	156066864	156066865	rs11764163	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	7q36.3	NR	rs11764163-?	NR	5E-9	(right cerebellum exterior)			NR [9227495] (imputed)	N
1775	chr7	156067050	156067051	rs12533568	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (min-P)	26,502 European ancestry individuals	NA	7q36.3	SDCCAG8, AKT3	rs12533568-?		5E-9				NR [7428630] (imputed)	N
1775	chr7	156067050	156067051	rs12533568	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (min-P)	26,502 European ancestry individuals	NA	7q36.3	SH3RF3	rs12533568-?		2E-8				NR [7428630] (imputed)	N
1775	chr7	156083151	156083152	rs4537191	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	7q36.3	NR	rs4537191-?	NR	3E-8	(right cerebellum exterior)			NR [9227495] (imputed)	N
1775	chr7	156083151	156083152	rs4537191	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	7q36.3	NR	rs4537191-?	NR	3E-8	(left cerebellum exterior)			NR [9227495] (imputed)	N
1775	chr7	156092668	156092669	rs4304216	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	7q36.3	NR	rs4304216-?	NR	7E-12	(cerebellar vermal lobules I V)			NR [9227495] (imputed)	N
1776	chr7	156111721	156111722	rs12698398	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	7q36.3	NR	rs12698398-?	NR	1E-9	(cerebellar vermal lobules I V)			NR [9227495] (imputed)	N
1776	chr7	156119360	156119361	rs73176866	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	7q36.3	SHH	rs73176866-C	0.754	4E-6		0.256	[0.025-0.487] ml/min/1.73m2 decrease	Affymetrix, Illumina [at least 5248638] (imputed)	N
1776	chr7	156119580	156119581	rs6972975	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	7q36.3	NR	rs6972975-?	NR	5E-9	(cerebellar vermal lobules I V)			NR [9227495] (imputed)	N
1776	chr7	156127245	156127246	rs12698403	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	7q36.3	LOC285889	rs12698403-A	0.4418	6E-26		0.0268	[0.022-0.032] unit decrease	Affymetrix [19819130] (imputed)	N
1776	chr7	156127245	156127246	rs12698403	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	7q36.3	LOC285889	rs12698403-A	0.4418	2E-12		0.0167	[0.012-0.021] unit decrease	Affymetrix [19819130] (imputed)	N
1776	chr7	156127245	156127246	rs12698403	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	7q36.3	LOC285889	rs12698403-A	0.4418	1E-22		0.0236	[0.019-0.028] unit decrease	Affymetrix [19819130] (imputed)	N
1776	chr7	156127245	156127246	rs12698403	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	7q36.3	LOC285889	rs12698403-A	0.4418	6E-31		0.0274	[0.023-0.032] unit decrease	Affymetrix [19819130] (imputed)	N
1776	chr7	156127245	156127246	rs12698403	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	7q36.3		rs12698403-?	NR	4E-13				NR [~ 8900000] (imputed)	N
1776	chr7	156127245	156127246	rs12698403	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	7q36.3		rs12698403-?	NR	6E-36				NR [~ 8900000] (imputed)	N
1776	chr7	156127245	156127246	rs12698403	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FEV1)	48,943 European ancestry individuals.	57,176 European ancestry individuals, 38,199 individuals.	7q36.3	LOC389602, LOC285889	rs12698403-A	0.4436	1E-13		0.029	[0.021-0.037] unit decrease	Affymetrix [up to 27624732] (imputed)	N
1776	chr7	156127442	156127443	rs10241238	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	150,266 East Asian ancestry individuals	NA	7q36.3		rs10241238-A	0.367523	7E-9		0.0174284	[0.012-0.023] unit decrease	Illumina [13478778] (imputed)	N
1776	chr7	156151174	156151175	rs56326046	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	7q36.3		rs56326046-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1776	chr7	156160508	156160508	rs35598089	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	7q36.3		rs35598089-CA	NR	3E-8		0.0084	[0.0055-0.0113] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1776	chr7	156162349	156162350	rs10242177	30452639	Butali A	2018-11-19	Hum Mol Genet	Genomic analyses in african populations identify novel risk loci for cleft palate.	Cleft palate	205 Sub-Saharan African ancestry cases, 2,159 Sub-Saharan African ancestry controls	100 Sub-Saharan African ancestry cases, 79 African American cases, 648 Sub-Saharan African ancestry controls, 186 African American controls	7q36.3	NR	rs10242177-?	NR	4E-7		5.053	NR z-score decrease	Illumina [~ 17000000] (imputed)	N
1776	chr7	156166302	156166303	rs36071136	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	7q36.3	NR	rs36071136-?	NR	6E-11	(left cerebellum exterior)			NR [9227495] (imputed)	N
1776	chr7	156166302	156166303	rs36071136	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	7q36.3	NR	rs36071136-?	NR	5E-10	(right cerebellum exterior)			NR [9227495] (imputed)	N
1776	chr7	156166302	156166303	rs36071136	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	7q36.3	NR	rs36071136-?	NR	3E-9	(cerebellar vermal lobules I V)			NR [9227495] (imputed)	N
1776	chr7	156166548	156166549	rs4716602	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Anti-saccade response	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	7q36.3	LOC285889	rs4716602-G	0.3766	5E-6				Illumina [4404269] (imputed)	N
1776	chr7	156167071	156167072	rs57131976	35079123	Chambers T	2022-01-25	Mol Psychiatry	Genetic common variants associated with cerebellar volume and their overlap with mental disorders: a study on 33,265 individuals from the UK-Biobank.	Total cerebellar volume (excluding Crus I vermis)	33,265 European ancestry individuals	NA	7q36.3		rs57131976-A	NR	1E-13		0.0409	[0.03-0.052] unit increase	Affymetrix [6193476] (imputed)	N
1776	chr7	156167071	156167072	rs57131976	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	7q36.3	NR	rs57131976-?	NR	2E-8	(cerebellar vermal lobules VI VII)			NR [9227495] (imputed)	N
1776	chr7	156194184	156194185	rs7808581	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	7q36.3	NR	rs7808581-C	0.552986	1E-9		0.00495663	[0.0033-0.0066] unit increase	Affymetrix [16582909] (imputed)	N
1776	chr7	156194184	156194185	rs7808581	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	7q36.3	NR	rs7808581-C	0.552986	3E-7		0.00460739	[0.0028-0.0065] unit increase	Affymetrix [16582965] (imputed)	N
1776	chr7	156203122	156203123	rs117376616	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	7q36.3		rs117376616-T	0.02	5E-8		5.46	z score increase	Affymetrix [9061022] (imputed)	N
1777	chr7	156252938	156252939	rs868822	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	7q36.3	LINC01006	rs868822-T	0.3331	3E-19		0.0029	[0.0023-0.0035] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
1777	chr7	156252938	156252939	rs868822	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Chronic kidney disease	64,164 European and unknown ancestry cases, 561,055 European and unknown ancestry controls	NA	7q36.3	LINC01006	rs868822-G	0.67	3E-8		1.0484378	[1.03-1.07]	Affymetrix, Illumina [9585923] (imputed)	N
1777	chr7	156254798	156254799	rs7795670	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	7q36.3	NR	rs7795670-T	0.8	4E-12		0.0158	[0.011-0.02] unit increase	NR [NR]	N
1777	chr7	156255887	156255888	rs10434923	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	7q36.3	NR	rs10434923-?	NR	8E-6		0.0754	[0.042-0.109] unit increase	Illumina [at least 560000] (imputed)	N
1777	chr7	156258178	156258179	rs2365286	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	7q36.3	LINC01006	rs2365286-A	0.7384	8E-17		0.0033	[0.0025-0.0041] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
1777	chr7	156258567	156258568	rs6459680	26831199	Pattaro C	2016-01-21	Nat Commun	Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function.	Glomerular filtration rate (creatinine)	133,413 European ancestry individuals	42,166 European ancestry individuals, up to 16,471 African ancestry individuals, up to 42,296 Asian ancestry individuals	7q36.3	RNF32	rs6459680-T	0.74	1E-9	(EA)	0.0055	[0.0037-0.0073] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1777	chr7	156261314	156261315	rs10279301	26503814	Hardin M	2016-10-27	Pharmacogenomics J	A genome-wide analysis of the response to inhaled ?2-agonists in chronic obstructive pulmonary disease.	Response to bronchodilator in chronic obstructive pulmonary disease (change in FEV1)	5,766 European ancestry cases, 811 African American cases	NA	7q36.3	LOC285889	rs10279301-C	NR	9E-7	(BDRPRED, EA)	0.61	[0.37-0.85] unit decrease	Illumina [NR] (imputed)	N
1777	chr7	156261476	156261488	rs201058601	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	7q36.3		rs201058601-T	NR	5E-13		0.0345	[0.025-0.044] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
1777	chr7	156265336	156265337	rs2140629	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	7q36.3	NR	rs2140629-?	NR	5E-43				Affymetrix [NR]	N
1777	chr7	156305503	156305504	rs6459689	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	7q36.3	Intergenic	rs6459689-A	0.2826	5E-9	(MTAG)	0.0148	[0.0099-0.0197] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1777	chr7	156311363	156311364	rs55911644	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	7q36.3	LINC01006	rs55911644-A	0.3609	9E-13		0.0141	[0.01-0.018] unit increase	Affymetrix [18391927] (imputed)	N
1777	chr7	156311491	156311492	rs7777647	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7q36.3		rs7777647-?	NR	6E-13				NR [~ 8900000] (imputed)	N
1777	chr7	156311744	156311745	rs9638084	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	7q36.3	NR	rs9638084-G	0.60362	2E-8		0.00725485	[0.0047-0.0098] unit increase	Affymetrix [16578495] (imputed)	N
1777	chr7	156311744	156311745	rs9638084	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	7q36.3	NR	rs9638084-G	0.603529	1E-13		0.0206264	[0.015-0.026] unit increase	Affymetrix [16580851] (imputed)	N
1777	chr7	156311744	156311745	rs9638084	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	7q36.3	LINC01006	rs9638084-A	0.3956	9E-13		0.1107	[0.08-0.141] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1777	chr7	156328428	156328429	rs117285160	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	7q36.3	NR	rs117285160-?	NR	1E-6		5030.56	NR unit decrease	Illumina [2379855]	N
1777	chr7	156346086	156346087	rs7792864	28916551	Liu Y	2017-09-15	J Rheumatol	Genetic Determinants of Radiographic Knee Osteoarthritis in African Americans.	Knee osteoarthritis	742 African American cases, 475 African American controls	NA	7q36.3	LINC01006	rs7792864-C	0.88	4E-9		2.35	[1.77-3.13]	Illumina [8300000] (imputed)	N
1778	chr7	156412813	156412814	rs849073	32349335	Lundback V	2020-04-27	Cells	Genome-Wide Association Study of Diabetogenic Adipose Morphology in the GENetics of Adipocyte Lipolysis (GENiAL) Cohort.	Adipose morphology	894 individuals	NA	7q36.3	NR	rs849073-G	0.4351	9E-6		34.0	[-48--19] unit decrease	NR [9714326] (imputed)	N
1778	chr7	156427015	156427016	rs1860158	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	7q36.3	NR	rs1860158-T	NR	2E-12		0.0184	[0.013-0.023] unit increase	Affymetrix [9000000] (imputed)	N
1778	chr7	156435042	156435043	rs75135281	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	7q36.3	NR	rs75135281-?	NR	5E-6		10515.993	NR unit decrease	Illumina [2379855]	N
1779	chr7	156519431	156519432	rs563257546	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	7q36.3	LMBR1	rs563257546-T	0.9982	6E-7		0.8394	[0.51-1.17] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1779	chr7	156595997	156595998	rs55633929	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	7q36.3	NR	rs55633929-A	0.424552	9E-12		0.013501	[0.0096-0.0174] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1779	chr7	156629864	156629864	rs112325780	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	7q36.3	LMBR1	rs112325780-CA	0.325753	1E-9		0.014435763	[0.0098-0.0191] unit decrease	Affymetrix [93095623] (imputed)	N
1780	chr7	156632714	156632715	rs7799144	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 238)	19,670 European ancestry individuals	NA	7q36.3		rs7799144-?	NR	9E-9				NR [9705931] (imputed)	N
1780	chr7	156736022	156736023	rs144759648	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	1,505 Ashkenazi Jewish founder cases, 2,553 Ashkenazi Jewish founder controls	NA	7q36.3	LMBR1, NOM1	rs144759648-A	NR	4E-6		1.79	[NR]	Illumina [up to 9792010] (imputed)	N
1780	chr7	156754974	156754975	rs77054396	31993563	Ware EB	2019-11-22	Mayo Clin Proc Innov Qual Outcomes	Genome-wide Association Study of 24-Hour Urinary Excretion of Calcium, Magnesium, and Uric Acid.	Urinary magnesium excretion	6,462 European ancestry individuals	NA	7q36.3	NOM1	rs77054396-A	0.94	9E-6		6.88	NR mg decrease	NR [NR] (imputed)	N
1781	chr7	156793451	156793451	rs140751051	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	7q36.3	MNX1	rs140751051-G	0.88	6E-7		1.09	1.05-1.12	Illumina [12557761] (imputed)	N
1781	chr7	156800621	156800622	rs13221118	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	7q36.3	NR	rs13221118-?	NR	1E-6				Affymetrix [NR]	N
1781	chr7	156819548	156819549	rs150308619	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	7q36.3	NR	rs150308619-?	NR	3E-6		0.398152	[0.23-0.56] unit increase	NR [13958389] (imputed)	N
1781	chr7	156871064	156871065	rs13236413	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	7q36.3	MNX1	rs13236413-?	NR	2E-6	(trimethylamine N oxide)	0.4082232	[0.24-0.58] unit increase	Affymetrix [at least 2500000] (imputed)	N
1781	chr7	156873007	156873008	rs73490592	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7q36.3	NR	rs73490592-A	0.01568	2E-8	(RPS19)	0.1254	NR unit increase	Illumina [1671387] (imputed)	N
1781	chr7	156880397	156880398	rs6966038	19846067	Garriock HA	2009-10-19	Biol Psychiatry	A genomewide association study of citalopram response in major depressive disorder.	Response to citalopram treatment	Up to 659 European ancestry responders, up to 121 African American responders, up to 103 Hispanic responders, 408 European ancestry non-responders, 120 African American non-responders, 80 Hispanic non-responders	NA	7q36.3	UBE3C	rs6966038-?	0.20	4E-7	(remission)	1.68	[1.37-2.04]	Affymetrix [430198]	N
1781	chr7	156880397	156880398	rs6966038	19846067	Garriock HA	2009-10-19	Biol Psychiatry	A genomewide association study of citalopram response in major depressive disorder.	Response to citalopram treatment	Up to 659 European ancestry responders, up to 121 African American responders, up to 103 Hispanic responders, 408 European ancestry non-responders, 120 African American non-responders, 80 Hispanic non-responders	NA	7q36.3	UBE3C	rs6966038-?	0.19	5E-7	(response)	1.64	[1.35-1.99]	Affymetrix [430198]	N
1781	chr7	156880919	156880920	rs12671090	29724592	Pottier C	2018-04-30	Lancet Neurol	Potential genetic modifiers of disease risk and age at onset in patients with frontotemporal lobar degeneration and GRN mutations: a genome-wide association study.	Language impairment in frontotemporal lobe dementia	169 European ancestry cases, 213 European ancestry controls	NA	7q36.3	UBE3C	rs12671090-G	0.6	4E-6		2.2727273	[1.27-11.11]	Illumina [7033776] (imputed)	N
1782	chr7	156930549	156930550	rs6459733	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	7q36.3	NR	rs6459733-G	0.6655	1E-24		0.0508	[0.041-0.06] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1782	chr7	156930549	156930550	rs6459733	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	7q36.3	MNX1	rs6459733-G	0.45999999999999996	3E-7		1.0526316	[1.03-1.06]	Illumina [12557761] (imputed)	N
1782	chr7	156930549	156930550	rs6459733	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	7q36.3	MNX1	rs6459733-G	0.6729	2E-17		1.06	[1.05-1.07]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1782	chr7	156948647	156948648	rs6946660	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	7q36.3	NR	rs6946660-C	0.4145	3E-33		0.0472	[0.04-0.055] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1782	chr7	156957879	156957880	rs142377611	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	7q36.3	NR	rs142377611-A	0.02613	3E-8	(SEPT11)	0.02466	NR unit decrease	Illumina [1671387] (imputed)	N
1782	chr7	156963819	156963819	rs397974548	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	7q36.3		rs397974548-CT	NR	2E-14		0.016	[0.012-0.02] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
1782	chr7	156968322	156968323	rs1002389	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	7q36.3		rs1002389-G	NR	2E-15		0.0511	[0.039-0.064] unit decrease	Affymetrix, Illumina [25845091] (imputed)	N
1782	chr7	156968322	156968323	rs1002389	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	7q36.3		rs1002389-G	NR	6E-14		0.0574	[0.043-0.072] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1782	chr7	156982449	156982450	rs6950739	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	7q36.3		rs6950739-C	0.529539868	3E-9		0.054810166	[0.037-0.073] unit decrease	Illumina [13429769] (imputed)	N
1782	chr7	156982449	156982450	rs6950739	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	7q36.3		rs6950739-C	0.525790261	3E-9		0.05859796	[0.039-0.078] unit decrease	Illumina [13134967] (imputed)	N
1782	chr7	156982449	156982450	rs6950739	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	7q36.3		rs6950739-C	0.542415541	2E-10		0.9483176	[0.932872168-0.964018754]	Illumina [8919992] (imputed)	N
1782	chr7	156983846	156983847	rs7786095	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	7q36.3	UBE3C	rs7786095-G	0.103859860937899	1E-8		0.0743	[0.049-0.1] unit decrease	NR [5035015] (imputed)	N
1782	chr7	157011935	157011936	rs117505963	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	7q36.3		rs117505963-C	NR	7E-10		0.0981	[0.067-0.129] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
1783	chr7	157024509	157024510	rs1182444	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	7q36.3	MNX1	rs1182444-G	0.495	2E-12		1.05	[1.03-1.06]	Affymetrix, Illumina [11800000] (imputed)	N
1783	chr7	157027752	157027753	rs1182436	28566273	Scott RA	2017-05-31	Diabetes	An Expanded Genome-Wide Association Study of Type 2 Diabetes in Europeans.	Type 2 diabetes	up to 26,676 European ancestry cases, up to 132,532 European ancestry controls	14,545 European ancestry cases, 38,994 European ancestry controls	7q36.3	MNX1	rs1182436-C	0.8	2E-8		1.08	[1.05-1.10]	Affymetrix, Illumina [at least 11579618] (imputed)	N
1783	chr7	157032923	157032924	rs1182395	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Type 2 diabetes	approximately 459,000 European ancestry individuals	NA	7q36.3		rs1182395-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1783	chr7	157035673	157035674	rs1182394	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	46,511 Asian ancestry cases, 169,776 Asian ancestry controls	NA	7q36.3	NR	rs1182394-G	0.5412	3E-8		0.0524	[0.034-0.071] unit decrease	Affymetrix, Illumina [1077427] (imputed)	N
1783	chr7	157038802	157038803	rs1182389	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	7q36.3	MNX1	rs1182389-G	0.46	1E-8		1.05	1.03-1.07	Illumina [12557761] (imputed)	N
1783	chr7	157045556	157045557	rs929354	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	7q36.3	UBE3C	rs929354-T	0.648	8E-6	(EA, men)	0.023	[0.013-0.033] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1783	chr7	157047637	157047638	rs10261278	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial squamous cell lung carcinoma	367 European ancestry cases, 31,563 European ancestry controls	NA	7q36.3	NR	rs10261278-A	0.041	4E-6		2.71	[1.77-4.15]	Illumina [7959153] (imputed)	N
1783	chr7	157075219	157075220	rs58112824	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	7q36.3	RP5-1142J19.1	rs58112824-A	0.126609	5E-9		0.019647485	[0.013-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1783	chr7	157075219	157075220	rs58112824	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	7q36.3	NR	rs58112824-A	0.126234	2E-11		0.019679	[0.014-0.025] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
1783	chr7	157075219	157075220	rs58112824	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	7q36.3		rs58112824-?	NR	3E-12				NR [~ 8900000] (imputed)	N
1783	chr7	157090295	157090296	rs2527866	19197348	Lowe JK	2009-02-06	PLoS Genet	Genome-wide association studies in an isolated founder population from the Pacific Island of Kosrae.	Quantitative traits	2,906 Kosraen individuals	NA	7q36.3	UBE3C	rs2527866-C	0.23	3E-6	(SBP)	0.27	[NR] mm Hg decrease	Affymetrix [408775]	N
1784	chr7	157201079	157201080	rs12669882	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	7q36.3	DNAJB6	rs12669882-A	0.9302	3E-6		0.0742	[0.043-0.105] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1784	chr7	157201079	157201080	rs12669882	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	7q36.3	DNAJB6	rs12669882-A	0.9302	3E-6		0.0742	[0.043-0.105] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1784	chr7	157201079	157201080	rs12669882	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	7q36.3	DNAJB6	rs12669882-A	0.9317	9E-6		0.0672	[0.038-0.097] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1784	chr7	157234418	157234419	rs4716734	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	7q36.3	NR	rs4716734-?	NR	2E-6	(Native Hawaiian)	0.5754	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1784	chr7	157260189	157260190	rs6459788	28654678	Mandage R	2017-06-27	PLoS One	Genetic factors affecting EBV copy number in lymphoblastoid cell lines derived from the 1000 Genome Project samples.	Epstein-Barr virus copy number in lymphoblastoid cell lines	389 East Asian ancestry individuals, 189 South Asian ancestry individuals, 492 European ancestry individuals, 467 Sub-Saharan African ancestry individuals, 59 African American individuals, 157 Hispanic/Latino individuals	NA	7q36.3	LOC101927914	rs6459788-?	NR	7E-6	(Hispanic/Latino)			NR [at least 880000]	N
1784	chr7	157270129	157270130	rs12669108	31816047	Boutin TS	2019-12-09	Hum Mol Genet	Insights into the genetic basis of retinal detachment.	Retinal detachment or retinal break	3,977 British ancestry cases, 360,233 British ancestry controls	NA	7q36.3	DNAJB6, PTPRN2	rs12669108-C	0.9229999999999999	3E-6		1.3076144	1.1806159-1.448274	Affymetrix, Illumina [7701827] (imputed)	N
1785	chr7	157294937	157294938	rs10227331	18821565	Lasky-Su J	2008-12-05	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association scan of quantitative traits for attention deficit hyperactivity disorder identifies novel associations and confirms candidate gene associations.	Inattentive symptoms	930 European ancestry trios	NA	7q36.3	intergenic	rs10227331-?	NR	4E-6	(count)			Perlegen [429981]	N
1785	chr7	157309590	157309591	rs61741249	30487263	Pollack S	2018-11-28	Diabetes	Multiethnic Genome-wide Association Study of Diabetic Retinopathy using Liability Threshold Modeling of Duration of Diabetes and Glycemic Control.	Diabetic retinopathy (moderate NPDR and PDR)	644 European ancestry cases, 1,970 European ancestry controls, 768 African American cases, 941 African American controls	2,388 East Asian ancestry cases, 6,219 East Asian ancestry controls, 1,658 European ancestry cases, 3,019 European ancestry controls, 1,014 Hispanic cases, 1,240 Hispanic controls	7q36.3	NR	rs61741249-?	NR	1E-6	(AA)	6.25	[NR]	Affymetrix, Illumina [NR] (imputed)	N
1785	chr7	157387440	157387441	rs10274279	23049088	Meng W	2012-10-09	Invest Ophthalmol Vis Sci	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		7q36.3	PTPRN2	rs10274279-?	0.123	4E-11			[NR]	Affymetrix, Illumina [152234]	N
1785	chr7	157407298	157407299	rs28386853	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	7q36.3	NR	rs28386853-C	0.0944	5E-9		0.0108955	[0.0072-0.0145] unit decrease	NR [9732723] (imputed)	N
1786	chr7	157441996	157441997	rs7811455	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Scarlet fever	6,812 European ancestry cases, 113,837 European ancestry controls	NA	7q36.3	NR	rs7811455-?	NR	3E-6		0.1377	[0.08-0.196] unit increase	Illumina [at least 560000] (imputed)	N
1786	chr7	157453334	157453335	rs73163848	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	7q36.3	NR	rs73163848-G	0.113	2E-7		0.00893168	[0.0056-0.0123] unit increase	NR [9732723] (imputed)	N
1786	chr7	157455458	157455459	rs1270639	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal cancer	978 Austrian ancestry cases, 4,294 European ancestry controls	NA	7q36.3	Intergenic	rs1270639-?		3E-6		1.437	[NR]	Affymetrix [492217] (imputed)	N
1786	chr7	157481779	157481780	rs10280711	34873335	van Rheenen W	2021-12-06	Nat Genet	Common and rare variant association analyses in amyotrophic lateral sclerosis identify 15 risk loci with distinct genetic architectures and neuron-specific biology.	Amyotrophic lateral sclerosis	27,205 European ancestry cases, 110,881 European ancestry controls, 2,407 East Asian ancestry cases, 11,775 East Asian ancestry controls	NA			rs10280711-G	NR	2E-8		0.086	[0.057-0.115] unit increase	Illumina [10461755] (imputed)	N
1786	chr7	157481779	157481780	rs10280711	34873335	van Rheenen W	2021-12-06	Nat Genet	Common and rare variant association analyses in amyotrophic lateral sclerosis identify 15 risk loci with distinct genetic architectures and neuron-specific biology.	Amyotrophic lateral sclerosis	27,205 European ancestry cases, 110,881 European ancestry controls	NA	7q36.3		rs10280711-G	0.124	6E-6		0.076	[0.043-0.109] unit increase	Illumina [10461755] (imputed)	N
1786	chr7	157505653	157505654	rs2533291	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Inflammatory skin disease	2,079 European ancestry atopic dermatitis cases, 4,212 European ancestry psoriasis cases, 11,899 European ancestry controls	NA	7q36.3	PTPRN2	rs2533291-?	NR	3E-10	(Opposed)			Affymetrix, Illumina [~ 5200000]	N
1786	chr7	157505659	157505660	rs7802459	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	7q36.3	NR	rs7802459-?	NR	5E-11				Affymetrix [NR]	N
1786	chr7	157508055	157508056	rs77530563	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Verbal-numerical reasoning	171,304 British ancestry individuals	NA	7q36.3		rs77530563-?	NR	5E-8				NR [7857346] (imputed)	N
1786	chr7	157508423	157508424	rs2952635	29678681	Matana A	2018-04-18	Genomics	Genome-wide meta-analysis identifies novel gender specific loci associated with thyroid antibodies level in Croatians.	Plasma anti-thyroid peroxidase levels	1,593 Croatian ancestry women, 1,025 Croatian ancestry men	NA	7q36.3	PTPRN2	rs2952635-A	NR	4E-6	(men)	0.252	[0.15-0.36] unit increase	Illumina [5527232] (imputed)	N
1786	chr7	157510194	157510195	rs6459804	21057379	Curtis D	2010-11-04	Psychiatr Genet	Case-case genome-wide association analysis shows markers differentially associated with schizophrenia and bipolar disorder and implicates calcium channel genes.	Bipolar disorder and schizophrenia	506 European ancestry bipolar 1 disorder cases, 523 European ancestry schizophrenia cases, 505 European ancestry controls	NA	7q36.3	PTPRN2	rs6459804-?	NR	8E-6				Affymetrix [302482]	N
1786	chr7	157515971	157515972	rs55770502	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	7q36.3	Intergenic	rs55770502-G	0.8849	3E-10		0.0192	[0.013-0.025] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1786	chr7	157534104	157534105	rs10949662	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	7q36.3	Intergenic	rs10949662-T	0.3409	3E-9	(MTAG)	0.0103	[0.007-0.0136] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1786	chr7	157534104	157534105	rs10949662	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	7q36.3	NR	rs10949662-?	NR	2E-7		5.22	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1786	chr7	157534104	157534105	rs10949662	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	7q36.3	PTPRN2	rs10949662-T	NR	2E-8		0.01760444	[0.011-0.024] unit decrease	Affymetrix [NR]	N
1786	chr7	157535976	157535977	rs11765189	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	7q36.3	PTPRN2	rs11765189-?	NR	2E-8		0.011864782	[0.0077-0.016] unit increase	NR [7306098]	N
1786	chr7	157535976	157535977	rs11765189	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	7q36.3	Intergenic	rs11765189-A	0.6584	7E-12	(MTAG)	0.0129	[0.0092-0.0166] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1786	chr7	157535976	157535977	rs11765189	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	7q36.3	Intergenic	rs11765189-A	0.6509	8E-13	(MTAG)	0.0173	[0.013-0.022] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1786	chr7	157536447	157536448	rs1009950	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	7q36.3	NR	rs1009950-G	0.409543	1E-10		0.04123028	[0.029-0.054] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1786	chr7	157536447	157536448	rs1009950	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	7q36.3	Intergenic	rs1009950-T	0.4077	8E-11		0.019	[0.013-0.025] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
1787	chr7	157549837	157549838	rs1242780	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite concentrations in chronic kidney disease	1,143 European ancestry cases	NA	7q36.3	PTPRN2	rs1242780-G	NR	2E-8	(Lysophosphatidylcholine with acyl residue C18:1)	0.294109	[0.19-0.4] unit decrease	Illumina [up to 9281895] (imputed)	N
1787	chr7	157564651	157564651	rs147022846	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip and palate	121 Asian ancestry cases, 159 European ancestry cases, 285 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	7q36.3	NR	rs147022846-?	NR	5E-6		1.7	[1.57-1.84]	Illumina [539000] (imputed)	N
1788	chr7	157690115	157690116	rs142037757	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	7q36.3	NR	rs142037757-?	NR	3E-6		0.0079541	[0.0046-0.0113] unit increase	Affymetrix [805426] (imputed)	N
1788	chr7	157714247	157714248	rs6459818	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	7q36.3	Intergenic	rs6459818-A	0.5777	3E-8	(MTAG)	0.0073	[0.0048-0.0098] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1788	chr7	157793121	157793122	rs10281741	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Triacylglyceride levels	2,045 European ancestry individuals	NA	7q36.3	PTPRN2	rs10281741-C	NR	2E-8	(TAG(54:6;0))	0.2083	[0.14-0.28] unit increase	Illumina [~ 9300000] (imputed)	N
1788	chr7	157807708	157807709	rs73169758	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota (beta diversity)	858 Metropolitan French ancestry individuals	NA	7q36.3	NR	rs73169758-T	0.148	2E-6	(Bray-Curtis metric)	4.6565194	NR z-score increase	Illumina [5293637] (imputed)	N
1789	chr7	157843522	157843523	rs3935208	33393196	Soliai M	2021-01-03	Int Forum Allergy Rhinol	Two-stage genome-wide association study of chronic rhinosinusitis and disease subphenotypes highlights mucosal immunity contributing to risk.	Chronic rhinosinusitis	483 European ancestry cases, 2,057 European ancestry controls	NA	7q36.3	PTPRN2, LOC100506585, MIR595	rs3935208-C	0.547	2E-7		0.547	[NR]	Illumina [4528849] (imputed)	N
1789	chr7	157918581	157918582	rs4909094	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	7q36.3	NCAPG2	rs4909094-?	NR	1E-6	(CE 14:0)	0.1830691	[0.11-0.26] unit increase	Affymetrix [at least 2500000] (imputed)	N
1789	chr7	157930242	157930243	rs10949698	31296530	Trendowski MR	2019-07-11	Clin Cancer Res	Clinical and Genome-Wide Analysis of Serum Platinum Levels after Cisplatin-Based Chemotherapy.	Serum platinum levels after completion of cisplatin chemotherapy	866 European ancestry individuals, 17 non-European ancestry individuals, 127 individuals	NR	7q36.3	NR	rs10949698-C	0.3239	6E-6		0.1383	[0.079-0.198] unit increase	Illumina [7305641] (imputed)	N
1790	chr7	157951834	157951835	rs4272321	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	7q36.3	PTPRN2	rs4272321-?	NR	8E-7		0.262	[0.16-0.37] unit increase	Illumina [at least 13000000] (imputed)	N
1790	chr7	157962891	157962892	rs117114682	29059430	Morton LM	2017-11-01	J Natl Cancer Inst	Genome-Wide Association Study to Identify Susceptibility Loci That Modify Radiation-Related Risk for Breast Cancer After Childhood Cancer.	Breast cancer in childhood cancer survivors treated with more than 10 gray radiotherapy	131 European ancestry cases, 493 European ancestry controls	NA	7q36.3	PTPRN2	rs117114682-G	0.02	2E-7		2.55	[1.61-4.02]	Affymetrix, Illumina [16958466] (imputed)	N
1790	chr7	157962891	157962892	rs117114682	29059430	Morton LM	2017-11-01	J Natl Cancer Inst	Genome-Wide Association Study to Identify Susceptibility Loci That Modify Radiation-Related Risk for Breast Cancer After Childhood Cancer.	Breast cancer in childhood cancer survivors	207 European ancestry female cases, 2,774 European ancestry female controls	NA	7q36.3	PTPRN2	rs117114682-G	0.03	4E-7		2.23	[1.52-3.26]	Affymetrix, Illumina [16958466] (imputed)	N
1790	chr7	157983839	157983840	rs56283944	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	7q36.3		rs56283944-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1790	chr7	158016763	158016764	rs56211164	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	7q36.3		rs56211164-A	NR	2E-8		0.0132	[0.0085-0.0179] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1790	chr7	158016763	158016764	rs56211164	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	7q36.3	NR	rs56211164-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
1790	chr7	158016763	158016764	rs56211164	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	7q36.3		rs56211164-?	NR	7E-8				NR [~ 8900000] (imputed)	N
1790	chr7	158048395	158048396	rs111630016	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	7q36.3	PTPRN2	rs111630016-C		3E-8		0.324	unit increase	Affymetrix [at least 2696785] (imputed)	N
1790	chr7	158053179	158053180	rs6976603	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (unclassified genus belonging to family Ruminococcaceae)	1,068 Japanese ancestry individuals	NA	7q36.3	PTPRN2	rs6976603-C	0.49	6E-6	(male)	0.0817	[0.047-0.117] unit increase	Illumina [6380737] (imputed)	N
1791	chr7	158111388	158111389	rs62479657	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	7q36.3		rs62479657-C	0.639	3E-9		0.007	[0.005-0.009] unit increase	NR [NR] (imputed)	N
1791	chr7	158111388	158111389	rs62479657	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	7q36.3	NCAPG2	rs62479657-T	0.3594	2E-9		0.0161337	[0.011-0.021] unit decrease	Affymetrix [~ 11515000] (imputed)	N
1791	chr7	158111388	158111389	rs62479657	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	7q36.3		rs62479657-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1791	chr7	158120730	158120731	rs9768139	25972035	Vinayagamoorthy N	2015-05-14	J Hum Genet	Association of common variants in the calcium-sensing receptor gene with serum calcium levels in East Asians.	Calcium levels	4,558 Korean ancestry individuals	4,093 Korean ancestry individuals	7q36.3	PTPRN2	rs9768139-G	0.423	6E-6		0.00176	[0.001-0.0025] unit decrease	Affymetrix [1219546] (imputed)	N
1791	chr7	158121242	158121243	rs57920447	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	7q36.3	NCAPG2	rs57920447-A	0.5949	2E-8		0.013544559	[0.0088-0.0183] unit increase	Affymetrix [11515109] (imputed)	N
1791	chr7	158136985	158136986	rs4909189	22952603	Hart AB	2012-08-28	PLoS One	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 10 individuals	NA	7q36.3	PTPRN2	rs4909189-?	NR	3E-6	(SF9)			Affymetrix [5476100] (imputed)	N
1791	chr7	158139005	158139006	rs73510370	31430377	Chung J	2019-08-20	Brain	Genome-wide association study of cerebral small vessel disease reveals established and novel loci.	Non-lobar intracerebral hemorrhage (MTAG)	at least 1,005 European ancestry cases, at least 1,711 European ancestry controls	NA	7q36.3	PTPRN2	rs73510370-?	NR	8E-6		1.22	[1.11-1.35]	Affymetrix, Illumina [39235000] (imputed)	N
1791	chr7	158151976	158151977	rs896773	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	7q36.3	NR	rs896773-?	NR	6E-29				Affymetrix [NR]	N
1791	chr7	158185144	158185145	rs151253645	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	7q36.3	NR	rs151253645-C	0.03	7E-6		0.77	[0.65-0.89]	Illumina [8468885] (imputed)	N
1791	chr7	158188325	158188326	rs185796593	28282560	Pott J	2017-02-24	Atherosclerosis	Genome-wide meta-analysis identifies novel loci of plaque burden in carotid artery.	Carotid plaque burden	7,189 European ancestry individuals	NA	7q36.3	PTPRN2	rs185796593-G	NR	2E-6		0.23997138	[0.14-0.34] unit increase	Affymetrix [9576485] (imputed)	N
1792	chr7	158221957	158221958	rs11981907	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		PTPRN2	rs11981907-?	NR	2E-8	(female)	2.38254	[NR] unit increase	Affymetrix [NR] (imputed)	N
1792	chr7	158223105	158223106	rs7786808	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	7q36.3	PTPRN2	rs7786808-G	0.445	8E-6	(Diet protein )	0.03	[NR] g/d increase	Illumina [899892]	N
1792	chr7	158234874	158234875	rs117576703	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Unilateral cleft lip and palate	205 Asian ancestry cases, 315 European ancestry cases, 692 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	7q36.3	NR	rs117576703-?	NR	4E-6		2.22	[2-2.47]	Illumina [539000] (imputed)	N
1792	chr7	158322805	158322806	rs10081191	33242228	Niu Y	2020-11-26	J Cell Mol Med	Genome-wide association study identifies 7q11.22 and 7q36.3 associated with noise-induced hearing loss among Chinese population.	Hearing loss in noise exposure	89 Chinese ancestry cases, 209 Chinese ancestry controls	53 Chinese ancestry cases, 360 Chinese ancestry controls	7q36.3	PTPRN2, NCAPG2, ESYT2, WDR60, VIPR2	rs10081191-A		2E-6		1.99	[1.51-2.65]	Illumina [3830431] (imputed)	N
1793	chr7	158340870	158340871	rs139009661	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Hyperopia	10,828 European ancestry hyperopia cases, 21,416 European ancestry emmetropia controls	NA	7q36.3	NR	rs139009661-?	NR	3E-6		0.511889	[0.3-0.73] unit increase	NR [13958389] (imputed)	N
1793	chr7	158370509	158370510	rs192339553	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Treponemataceae abundance in stool	5,959 Finnish ancestry individuals	NA	7q36.3		rs192339553-T	0.0101578	2E-8		0.103723	[0.068-0.14] unit increase	Illumina [7980478] (imputed)	N
1793	chr7	158436546	158436547	rs2290395	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	7q36.3	NCAPG2	rs2290395-G	0.085731	4E-11		0.026551023	[0.019-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
1794	chr7	158500804	158500805	rs12668837	31624269	Terao C	2019-10-17	Nat Commun	GWAS of mosaic loss of chromosome Y highlights genetic effects on blood cell differentiation.	Mosaic loss of chromosome Y (Y chromosome dosage)	95,380 Japanese men	NA	7q36.3	NCAPG2, ESYT2	rs12668837-T	0.46	2E-9		0.026	NR unit decrease	Illumina [9591901] (imputed)	N
1794	chr7	158500804	158500805	rs12668837	31624269	Terao C	2019-10-17	Nat Commun	GWAS of mosaic loss of chromosome Y highlights genetic effects on blood cell differentiation.	Mosaic loss of chromosome Y (Y chromosome dosage)	205,011 men	NA	7q36.3	NCAPG2, ESYT2	rs12668837-T	0.08	1E-6		0.011	unit increase	NR [NR]	N
1794	chr7	158501491	158501492	rs11769858	28604732	Wang Z	2017-06-12	Nat Genet	Meta-analysis of five genome-wide association studies identifies multiple new loci associated with testicular germ cell tumor.	Testicular germ cell tumor	3,558 European ancestry cases, 13,970 European ancestry controls	NA	7q36.3	NCAPG2	rs11769858-T	0.3	2E-8		1.1904762	[1.12-1.27]	Illumina [9210350] (imputed)	N
1794	chr7	158522442	158522443	rs4299951	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	7q36.3		rs4299951-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1794	chr7	158525890	158525891	rs34119683	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Age at menopause	approximately 143,000 European ancestry individuals	NA	7q36.3		rs34119683-?	NR	2E-7				NR [~ 8900000] (imputed)	N
1794	chr7	158539571	158539572	rs2709865	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	7q36.3	ESYT2	rs2709865-C	0.9409362	2E-27		0.05486901	[0.045-0.065] unit increase	Affymetrix [93095623] (imputed)	N
1794	chr7	158556133	158556134	rs842440	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	7q36.3	ESYT2	rs842440-C	0.9388794	1E-17		0.040591963	[0.031-0.05] unit decrease	Affymetrix [93095623] (imputed)	N
1794	chr7	158575217	158575218	rs1307540	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q36.3	NR	rs1307540-A	0.939351	7E-23				Affymetrix, Illumina [24588908] (imputed)	N
1794	chr7	158575217	158575218	rs1307540	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	7q36.3	NR	rs1307540-A	0.942786	3E-22		0.040026	[0.032-0.048] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1794	chr7	158594381	158594382	rs2602556	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	7q36.3	NR	rs2602556-A	0.057842	3E-67		0.070957	[0.063-0.079] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
1795	chr7	158597660	158597661	rs2788493	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	7q36.3	NR	rs2788493-C	0.0590951	8E-68				Affymetrix, Illumina [17210439] (imputed)	N
1795	chr7	158610646	158610647	rs35513757	26379185	Garcia-Etxebarria K	2015-09-17	PLoS One	No Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity.	Mild influenza (H1N1) infection	107 European ancestry mild cases, 549 European ancestry population controls	NA	7q36.3	ESYT2	rs35513757-?	0.001848	2E-8		23.19	[21.61-24.77]	Affymetrix [547296]	N
1795	chr7	158616885	158616886	rs79425047	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	7q36.3	ESYT2	rs79425047-T	0.019167	4E-15		0.064475834	[0.048-0.081] unit increase	Affymetrix [93095623] (imputed)	N
1795	chr7	158625877	158625877	rs35547687	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	7q36.3	ESYT2	rs35547687-CA	0.8638	2E-25		0.0547073	[0.044-0.065] unit increase	Affymetrix [~ 2500000] (imputed)	N
1795	chr7	158629896	158629897	rs2657375	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	7q36.3		rs2657375-G	0.332835	4E-15		0.020006144	[0.015-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1795	chr7	158639075	158639076	rs842682	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	7q36.3		rs842682-A	NR	1E-15		0.0188	[0.014-0.024] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1795	chr7	158707016	158707017	rs41271217	32752121	Nedoszytko B	2020-07-31	Int J Mol Sci	Results from a Genome-Wide Association Study (GWAS) in Mastocytosis Reveal New Gene Polymorphisms Associated with WHO Subgroups.	Cutaneous mastocytosis (adult)	65 European ancestry cases, 5,606 European ancestry controls	NA	7q36.3	WDR60	rs41271217-G	0.02292	1E-7		4.487	[3.88-5.09]	Illumina [281811]	N
1795	chr7	158724788	158724789	rs2730245	18391950	Lettre G	2008-04-06	Nat Genet	Identification of ten loci associated with height highlights new biological pathways in human growth.	Height	15,821 European ancestry individuals	Up to 17,801 European ancestry individuals	7q36.3	WDR60	rs2730245-G	0.33	3E-7		0.32	[0.19-0.44] cm increase	Affymetrix, Illumina [2260683] (imputed)	N
1796	chr7	158745141	158745142	rs262147	25625606	Mather KA	2015-01-27	PLoS One	Investigating the genetics of hippocampal volume in older adults without dementia.	Hippocampal volume	498 European ancestry older adult individuals	NA	7q36.3	intergenic	rs262147-T		4E-6		150.06	[85.95-214.17] unit increase	Affymetrix, Illumina [at least 646791] (imputed)	N
1796	chr7	158758610	158758611	rs2730276	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	7q36.3	NR	rs2730276-?	NR	4E-20				Affymetrix [NR]	N
1796	chr7	158775381	158775382	rs566170824	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	7q36.3	NR	rs566170824-?	NR	7E-7		1.32361	[0.8-1.85] unit increase	NR [13958389] (imputed)	N
1796	chr7	158777933	158777934	rs262150	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 20)	2,187 European ancestry individuals	NA	7q36.3	NR	rs262150-G	0.3485	1E-6		0.1533	[0.092-0.214] unit increase	Illumina [10677593] (imputed)	N
1796	chr7	158823500	158823501	rs117023057	30306274	Shah RL	2018-10-10	Hum Genet	Genome-wide association studies for corneal and refractive astigmatism in UK Biobank demonstrate a shared role for myopia susceptibility loci.	Corneal astigmatism	Up to 86,335 European ancestry individuals		7q36.3	VIPR2	rs117023057-G	0.984	3E-6		0.054	[0.03-0.078] dioptres decrease	NR [5901671] (imputed)	N
1796	chr7	158839898	158839899	rs118066386	33594131	Donati G	2021-02-16	Sci Rep	Evidence for specificity of polygenic contributions to attainment in English, maths and science during adolescence.	Academic attainment (English)	5,983 European ancestry adolescents	NA	7q36.3	VIPR2	rs118066386-T	NR	8E-6		0.289	[0.16-0.42] unit increase	Illumina [6319684] (imputed)	N
1796	chr7	158846928	158846929	rs2730260	23406873	Shi Y	2013-02-28	Hum Mol Genet	A genome-wide meta-analysis identifies two novel loci associated with high myopia in the Han Chinese population.	Myopia (pathological)	665 Han Chinese ancestry cases, 960 Han Chinese ancestry controls	2,128 Han Chinese ancestry cases, 3,683 Han Chinese ancestry controls	7q36.3	VIPR2	rs2730260-C	0.238	9E-14		1.33	[1.23-1.44]	Illumina [286031]	N
1796	chr7	158848820	158848821	rs3793217	32227373	Osazuwa-Peters OL	2020-03-29	Genet Epidemiol	Identifying blood pressure loci whose effects are modulated by multiple lifestyle exposures.	Diastolic blood pressure x quantitative lifestyle risk score interaction (2df test)	6,253 European ancestry individuals	NA	7q36.3	VIPR2	rs3793217-A	0.865	3E-7				NR [2411113] (imputed)	N
1796	chr7	158848820	158848821	rs3793217	32227373	Osazuwa-Peters OL	2020-03-29	Genet Epidemiol	Identifying blood pressure loci whose effects are modulated by multiple lifestyle exposures.	Diastolic blood pressure x quantitative lifestyle risk score interaction (1df test)	6,253 European ancestry individuals	NA	7q36.3	VIPR2	rs3793217-A	0.865	1E-7		0.62	[0.38-0.86] unit increase	NR [2411113] (imputed)	N
1796	chr7	158848820	158848821	rs3793217	29844195	Hosoda Y	2018-05-29	Proc Natl Acad Sci U S A	CFH and VIPR2 as susceptibility loci in choroidal thickness and pachychoroid disease central serous chorioretinopathy.	Sub-foveal choroidal thickness	3,418 Japanese ancestry individuals	2,692 Japanese ancestry individuals	7q36.3	VIPR2	rs3793217-G	0.213	7E-8		10.34	[NR] unit increase	Illumina [4710779] (imputed)	N
1796	chr7	158854213	158854214	rs2467806	34822396	Pott J	2021-10-28	Metabolites	Sex-Specific Causal Relations between Steroid Hormones and Obesity-A Mendelian Randomization Study.	Progesterone levels	4,097 individuals	NA	7q36.3		rs2467806-C	NR	4E-8		0.37308	[0.24-0.51] unit decrease	Affymetrix [10900000] (imputed)	N
1797	chr7	158874597	158874598	rs60884546	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	7q36.3	VIPR2	rs60884546-A	0.025	5E-10		6.226	[NR] z score decrease	Affymetrix, Illumina [~ 11000000] (imputed)	N
1797	chr7	158881120	158881121	rs117647886	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	7q36.3	NR	rs117647886-C		6E-10		0.15	[0.11-0.19] unit increase	NR [NR]	N
1797	chr7	158888727	158888728	rs184020833	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in diabetes mellitus	153 Korean ancestry cases, 5,161 Korean ancestry controls	NA	7q36.3		rs184020833-G	0.02613	8E-6		3.062	[1.876-4.999]	Affymetrix [7975321] (imputed)	N
1797	chr7	158893554	158893555	rs58692092	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	7q36.3	NR	rs58692092-?	NR	5E-6		0.114676	[0.065-0.164] unit increase	NR [13958389] (imputed)	N
1797	chr7	158914169	158914170	rs7810170	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		VIPR2	rs7810170-?	NR	9E-12	(male)	1.65233	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1797	chr7	158920617	158920618	rs144364340	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	7q36.3	NR	rs144364340-C		4E-14		0.42	[0.3-0.54] unit increase	NR [NR]	N
1797	chr7	158923088	158923089	rs117054573	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	7q36.3		rs117054573-A	0.010865	8E-6		0.14413	[0.081-0.207] unit decrease	Affymetrix [15580782] (imputed)	N
1797	chr7	158923088	158923089	rs117054573	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	7q36.3		rs117054573-A	0.010865	2E-6		0.156	[0.092-0.22] unit decrease	Affymetrix [15580782] (imputed)	N
1797	chr7	158928374	158928375	rs12234576	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	7q36.3	NR	rs12234576-A		2E-15		0.11	[0.09-0.13] unit increase	NR [NR]	N
1797	chr7	158928374	158928375	rs12234576	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	7q36.3	PTPRN2, NCAPG2, ESYT2, WDR60, VIPR2	rs12234576-?		2E-37				Affymetrix, Illumina [NR] (imputed)	N
1797	chr7	158928426	158928427	rs435077	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent	41,073 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	7q36.3	NR	rs435077-T	0.328	6E-11	(EA)	0.1262	[0.088-0.164] unit increase	Affymetrix, Illumina [~ 9300000] (imputed)	N
1797	chr7	158957613	158957614	rs41559	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	7q36.3	NR	rs41559-A		7E-14		0.09	[0.07-0.11] unit increase	NR [NR]	N
1797	chr7	158960104	158960105	rs412926	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	7q36.3	VIPR2	rs412926-T	0.626950944543065	3E-6	(G_Prevotella_RNT)	0.138224	[0.08-0.196] unit increase	Illumina [7711310] (imputed)	N
1797	chr7	158989843	158989844	rs113543909	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	7q36.3	NR	rs113543909-C		1E-10		0.24	[0.16-0.32] unit increase	NR [NR]	N
1798	chr7	159009781	159009782	rs143632216	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	7q36.3	NR	rs143632216-?	NR	2E-7		0.675365	[0.42-0.93] unit increase	NR [13958389] (imputed)	N
1798	chr7	159033039	159033040	rs144148436	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	7q36.3	NR	rs144148436-T		5E-9		0.31	[0.21-0.41] unit increase	NR [NR]	N
1798	chr7	159055449	159055450	rs4143339	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	7q36.3	NR	rs4143339-A		2E-8		0.07	[0.05-0.09] unit increase	NR [NR]	N
1798	chr7	159093346	159093347	rs7789096	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	7q36.3	VIPR2, NONE	rs7789096-A	0.6315	5E-8		5.455	[NR] z score increase	Affymetrix, Illumina [~ 11000000] (imputed)	N
586	chr8	156503	156504	rs7822515	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	8p23.3		rs7822515-?	NR	3E-8				NR [~ 8900000] (imputed)	N
586	chr8	170691	170692	rs66823261	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	8p23.3		rs66823261-T	NR	1E-8		0.96	[0.94-0.97]	Affymetrix, Illumina [NR] (imputed)	N
586	chr8	170691	170692	rs66823261	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	8p23.3	NR	rs66823261-C	0.2289	3E-7	(EA)	0.041	[0.025-0.057] unit increase	Illumina [~ 11800000] (imputed)	N
586	chr8	170691	170692	rs66823261	29058716	Milne RL	2017-10-23	Nat Genet	Identification of ten variants associated with risk of estrogen-receptor-negative breast cancer.	Breast cancer (estrogen-receptor negative)	14,135 European ancestry cases, 58,126 European ancestry controls	7,333 European ancestry cases, 42,468 European ancestry controls	8p23.3	RPL23AP53	rs66823261-C	0.23	6E-9		1.09	[1.06-1.12]	Illumina [~ 11500000] (imputed)	N
586	chr8	170691	170692	rs66823261	29058716	Milne RL	2017-10-23	Nat Genet	Identification of ten variants associated with risk of estrogen-receptor-negative breast cancer.	Breast cancer	14,135 European ancestry ER- cases, 58,126 European ancestry controls, 7,784 European ancestry  BRCA1 carrrier cases, 7,782 European ancestry BRCA1 carrrier controls	7,333 European ancestry ER- cases, 42,468 European ancestry controls, 1,630 European ancestry BRCA1 carrrier cases, 1,712 European ancestry BRCA1 carrrier controls	8p23.3	RPL23AP53	rs66823261-C	0.23	3E-8		1.09	[1.06-1.12] (BCAC)	Illumina [~ 11500000] (imputed)	N
586	chr8	240577	240578	rs55680580	24159190	Seppala I	2013-10-24	Eur Heart J	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Symmetrical dimethylarginine levels	5110 European ancestry individuals	NA	8p23.3	NR	rs55680580-A	0.043	8E-6		0.288	[0.16-0.42] unit increase	Affymetrix, Illumina [10085758] (imputed)	N
587	chr8	265709	265710	rs186781917	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	8p23.3	NR	rs186781917-?	NR	2E-8				Illumina [7760689] (imputed)	N
587	chr8	298108	298109	rs12547447	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8p23.3	NR	rs12547447-T	0.01916	1E-8	(EIF4A1)	0.4867	NR unit increase	Illumina [1671387] (imputed)	N
587	chr8	298108	298109	rs12547447	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8p23.3	NR	rs12547447-T	0.01916	1E-8	(EIF3E)	0.02287	NR unit increase	Illumina [1671387] (imputed)	N
587	chr8	332163	332164	rs116861842	29532581	Hallfors J	2018-03-13	Addict Biol	Genome-wide association study in Finnish twins highlights the connection between nicotine addiction and neurotrophin signaling pathway.	Nicotine dependence symptom count	1,715 Finnish ancestry ever smoker individuals from 739 families	NA	8p23.3	NR	rs116861842-T	0.011	2E-6		1.34	[0.79-1.89] unit increase	Illumina [9469131] (imputed)	N
587	chr8	365971	365972	rs145185972	32701715	Zhang Y	2020-07-21	J Bone Joint Surg Am	PPARGC1B Is Associated with Nontraumatic Osteonecrosis of the Femoral Head: A Genomewide Association Study on a Chart-Reviewed Cohort.	Nontraumatic osteonecrosis of the femoral head	118 European ancestry cases, 56,811 European ancestry controls	NA	8p23.3	FBXO25	rs145185972-G	0.023	2E-6		3.43	[2.07-5.69]	Illumina [3905175] (imputed)	N
588	chr8	403303	403304	rs3735925	29273593	Duan L	2017-12-22	Stroke	Novel Susceptibility Loci for Moyamoya Disease Revealed by a Genome-Wide Association Study.	Moyamoya disease	755 Han Chinese ancestry cases, 2,031 Han Chinese ancestry controls	724 Han Chinese ancestry cases, 3,043 Han Chinese ancestry controls	8p23.3	NR	rs3735925-A	0.66	5E-7		1.2658228	[NR]	Illumina [747089]	N
588	chr8	427139	427140	rs2100160	30276832	Edwards AC	2018-10-01	Alcohol Clin Exp Res	Meta-Analysis of Genetic Influences on Initial Alcohol Sensitivity.	Initial alcohol sensitivity	6,039 European ancestry individuals, 892 African ancestry individuals, 408 American ancestry individuals	NA	8p23.3	ENSG00000272005	rs2100160-?	NR	5E-6				Affymetrix, Illumina [15642250] (imputed)	N
588	chr8	432880	432881	rs74331971	30134952	Traglia M	2018-08-22	Genome Med	Cross-genetic determination of maternal and neonatal immune mediators during pregnancy.	Neonatal cytokine/chemokine levels (fetal genetic effect)	764 Hispanic, European, Asian, South Asian or African American individuals	NA	8p23.3	FBXO25, TDRP	rs74331971-A	0.03	2E-9	(IL-4)	0.4	[0.26-0.54] unit decrease	Affymetrix [622716]	N
588	chr8	439088	439089	rs4735796	31250787	Fawns-Ritchie C	2019-06-01	Twin Res Hum Genet	Genetic Contributions to Health Literacy.	Health literacy	1,771 English ancestry cases, 4,012 English ancestry controls	NA	8p23.3	TDRP	rs4735796-A	NR	2E-6		0.02858	[0.017-0.04] unit decrease	Illumina [NR] (imputed)	N
588	chr8	445600	445601	rs17665859	21646302	Bielinski SJ	2011-06-06	Mayo Clin Proc	Mayo Genome Consortia: a genotype-phenotype resource for genome-wide association studies with an application to the analysis of circulating bilirubin levels.	Bilirubin levels	6,307 European ancestry individuals	NA	8p23.3	C8orf42	rs17665859-?	0.07	5E-7		0.088	[0.06-0.12] mg/dL decrease	Illumina [583129]	N
588	chr8	453250	453251	rs6997375	31250787	Fawns-Ritchie C	2019-06-01	Twin Res Hum Genet	Genetic Contributions to Health Literacy.	Health literacy	1,771 English ancestry cases, 4,012 English ancestry controls	NA	8p23.3	TDRP	rs6997375-T	NR	3E-7		0.03051	[0.019-0.042] unit decrease	Illumina [NR] (imputed)	N
588	chr8	460239	460240	rs141443024	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (negative Marder score)	1,390 European ancestry cases	NA	8p23.3		rs141443024-G	NR	9E-6	(GLM)	3.4524	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
588	chr8	460239	460240	rs141443024	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (PANSS score)	1,390 European ancestry individuals	NA	8p23.3		rs141443024-G	NR	9E-6	(GLM)	12.905	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
588	chr8	516478	516479	rs722782	22705344	Sobrin L	2012-06-15	Ophthalmology	Heritability and genome-wide association study to assess genetic differences between advanced age-related macular degeneration subtypes.	Age-related macular degeneration (geographic atrophy)	819 European ancestry geographic atrophy cases, 4,134 European ancestry controls	NA	8p23.3	C80rf42	rs722782-?	0.894	2E-6		1.67	[1.35-2.08]	Affymetrix, Illumina [6036699] (imputed)	N
588	chr8	523919	523920	rs10109541	26242244	Ma Y	2015-08-05	Sci Rep	Association of chromosome 5q21.3 polymorphisms with the exploratory eye movement dysfunction in schizophrenia.	Exploratory eye movement dysfunction in schizophrenia (responsive search score)	128 Han Chinese ancestry cases	NA	8p23.3	NR	rs10109541-?	NR	9E-6		2.288	[1.32-3.26] unit decrease	Illumina [498648]	N
589	chr8	540076	540077	rs4735882	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8p23.3	ERICH1	rs4735882-?	NR	3E-6	(DAG 34:1)	0.18488374	[0.11-0.26] unit decrease	Affymetrix [at least 2500000] (imputed)	N
589	chr8	540076	540077	rs4735882	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8p23.3	ERICH1	rs4735882-?	NR	2E-6	(TAG 52:2)	0.18827733	[0.11-0.27] unit decrease	Affymetrix [at least 2500000] (imputed)	N
589	chr8	543249	543250	rs1612273	31830031	Chernus JM	2019-12-12	PLoS Genet	A candidate gene analysis and GWAS for genes associated with maternal nondisjunction of chromosome 21.	Maternal nondisjunction of chromosome 21 (mothers vs fathers)	705 mothers, 645 fathers	NA	8p23.3	NR	rs1612273-?		6E-6		1.51	[NR]	Illumina [NR] (imputed)	N
589	chr8	561089	561090	rs143864163	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8p23.3	NR	rs143864163-A	0.01045	1E-8	(GSTP1)	0.1914	NR unit increase	Illumina [1671387] (imputed)	N
589	chr8	562962	562963	rs148048756	31095341	Kerns SL	2019-05-16	J Natl Cancer Inst	Radiogenomics Consortium Genome-Wide Association Study Meta-analysis of Late Toxicity after Prostate Cancer Radiotherapy.	Toxicity response to radiotherapy in prostate cancer (rectal bleeding) (time to event)	3,379 European ancestry individuals	NA	8p23.3	NR	rs148048756-?	0.03	4E-8		4.83	[2.75-8.47]	Affymetrix, Illumina [~ 6000000] (imputed)	N
589	chr8	566206	566207	rs17666538	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	8p23.3	NR	rs17666538-C	0.073151367141585	7E-6	(IGP31)	0.2848	[0.16-0.41] unit decrease	Illumina [~ 2500000] (imputed)	N
589	chr8	616483	616484	rs2247256	31220337	Carr DF	2019-06-20	Clin Pharmacol Ther	Genome-wide association study of statin-induced myopathy in patients recruited using the UK clinical practice research datalink.	Statin-induced myopathy (severe)	32 European ancestry cases, 2,501 controls	NA	8p23.3	ERICH1	rs2247256-?	NR	2E-6		6.25	[0.023-16.667]	Illumina [654642] (imputed)	N
589	chr8	648047	648048	rs58004422	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	8p23.3		rs58004422-A	NR	1E-8		0.0116	[0.0077-0.0155] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
590	chr8	673081	673082	rs60603343	31596875	Traylor M	2019-10-09	PLoS One	Genetic associations with radiological damage in rheumatoid arthritis: Meta-analysis of seven genome-wide association studies of 2,775 cases.	Joint damage in rheumatoid arthritis	2,527 European ancestry individuals, 196 African ancestry individuals, 52 individuals	NA	8p23.3	ERICH1	rs60603343-?	NR	1E-6				Affymetrix, Illumina [4802696] (imputed)	N
590	chr8	683208	683209	rs73178888	31830031	Chernus JM	2019-12-12	PLoS Genet	A candidate gene analysis and GWAS for genes associated with maternal nondisjunction of chromosome 21.	Maternal nondisjunction of chromosome 21 (MII error vs fathers)	157 mothers, 645 fathers	NA	8p23.3	NR	rs73178888-?		7E-6		3.83	[NR]	Illumina [NR] (imputed)	N
590	chr8	705921	705922	rs139288166	31095341	Kerns SL	2019-05-16	J Natl Cancer Inst	Radiogenomics Consortium Genome-Wide Association Study Meta-analysis of Late Toxicity after Prostate Cancer Radiotherapy.	Toxicity response to radiotherapy in prostate cancer (rectal bleeding) (time to event)	3,379 European ancestry individuals	NA	8p23.3	NR	rs139288166-?	0.03	7E-8		4.3	[2.53-7.31]	Affymetrix, Illumina [~ 6000000] (imputed)	N
590	chr8	763539	763540	rs12676895	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	8p23.3	Intergenic	rs12676895-A	0.7482	2E-8	(MTAG)	0.0085	[0.0056-0.0114] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
590	chr8	776792	776793	rs145923053	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8p23.3	NR	rs145923053-T	0.02091	2E-8	(GSR)	0.05072	NR unit increase	Illumina [1671387] (imputed)	N
590	chr8	776792	776793	rs145923053	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8p23.3	NR	rs145923053-T	0.02091	2E-8	(CTSS)	0.009234	NR unit increase	Illumina [1671387] (imputed)	N
590	chr8	776792	776793	rs145923053	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8p23.3	NR	rs145923053-T	0.02091	1E-9	(GCN1)	0.02939	NR unit increase	Illumina [1671387] (imputed)	N
590	chr8	776792	776793	rs145923053	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8p23.3	NR	rs145923053-T	0.02091	1E-10	(ACO2)	0.458	NR unit increase	Illumina [1671387] (imputed)	N
591	chr8	812945	812946	rs17739794	25656473	de With SA	2015-02-05	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of lymphoblast cell viability after clozapine exposure.	Clozapine-induced cytotoxicity	90 European ancestry lymphoblast cell lines	NA	8p23.3	ERICH1-AS1	rs17739794-?	NR	6E-6	(AUC)			NR [2092490]	N
591	chr8	821584	821585	rs7002351	31250787	Fawns-Ritchie C	2019-06-01	Twin Res Hum Genet	Genetic Contributions to Health Literacy.	Health literacy	1,771 English ancestry cases, 4,012 English ancestry controls	NA	8p23.3	ERICH1-AS1	rs7002351-A	NR	9E-6		0.02616	[0.015-0.038] unit increase	Illumina [NR] (imputed)	N
591	chr8	821592	821593	rs117603268	33426524	Ramanan VK	2020-09-26	Brain Commun	Variants in <i>PPP2R2B</i> and <i>IGF2BP3</i> are associated with higher tau deposition.	Tau burden	754 European ancestry individuals	NA	8p23.3	DLGAP2	rs117603268-G	0.025	7E-7		0.17	NR unit increase	Illumina [6417232] (imputed)	N
592	chr8	977435	977436	rs113660214	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	8p23.3	NR	rs113660214-?	NR	2E-6		0.5166	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
592	chr8	1022376	1022377	rs1078321	31497858	Dumitrescu L	2019-09-01	Brain	Sex differences in the genetic predictors of Alzheimer's pathology.	Neuritic plaque	2,701 European ancestry men, 3,275 European ancestry women	NA	8p23.3	DLGAP2	rs1078321-G	0.420485	9E-6		0.302747	[0.17-0.44] unit increase	Affymetrix, Illumina [NR] (imputed)	N
592	chr8	1035057	1035058	rs79367487	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	8p23.3	NR	rs79367487-A	0.199705339669723	4E-8		0.006329809	[0.0041-0.0086] unit increase	NR [NR]	N
592	chr8	1035151	1035152	rs12681288	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	8p23.3	NR	rs12681288-A	NR	2E-6		1.05	[NR]	Illumina [7158791] (imputed)	N
592	chr8	1035728	1035729	rs6988649	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	8p23.3	NR	rs6988649-T	0.202385001390589	4E-8		0.0064693824	[0.0042-0.0088] unit increase	NR [NR]	N
592	chr8	1038713	1038714	rs139682541	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mononucleosis	17,457 European ancestry cases, 68,446 European ancestry controls	NA	8p23.3	NR	rs139682541-?	NR	9E-6		0.2896	[0.16-0.42] unit decrease	Illumina [at least 560000] (imputed)	N
593	chr8	1054431	1054432	rs73524649	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		DLGAP2	rs73524649-?	NR	2E-12		1.31664	[NR] unit decrease	Affymetrix [NR] (imputed)	N
593	chr8	1056990	1056992	rs72233830	35157032	Ramachandran D	2022-02-14	Hum Mol Genet	Genome-wide association study and functional follow-up identifies 14q12 as a candidate risk locus for cervical cancer.	Cervical cancer	363 German ancestry cases, 861 German ancestry controls	NA	8p23.3	NR	rs72233830-TGA	0.014	3E-6		12.646	[11.58-13.71]	Illumina [10000612] (imputed)	N
593	chr8	1074466	1074467	rs73526541	28800603	Arpawong TE	2017-08-11	PLoS One	Genetic variants specific to aging-related verbal memory: Insights from GWASs in a population-based cohort.	Verbal memory performance (immediate recall change)	7,486 European ancestry individuals aged 50 years or older	6,898 European ancestry individuals aged 50 years or older	8p23.3	NR	rs73526541-A	NR	3E-6			unit decrease	Illumina [at least 1198956] (imputed)	N
593	chr8	1077769	1077770	rs73526559	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		DLGAP2	rs73526559-?	NR	2E-9	(male)	1.2254	[NR] unit decrease	Affymetrix [NR] (imputed)	N
593	chr8	1083363	1083364	rs1451882	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	8p23.3	NR	rs1451882-?	NR	2E-6	(AA)	14.73	[12.97-16.49]	Illumina [905956]	N
593	chr8	1085583	1085584	rs138808635	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Tumor necrosis factor alpha levels	3,454 Finnish ancestry individuals	NA	8p23.3	NR	rs138808635-C		9E-6		0.6906	[0.39-0.99] SD units decrease	NR [10700000] (imputed)	N
593	chr8	1121420	1121421	rs12676991	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Diastolic blood pressure (long-term average)	5,304 African American individuals	6,500 African American individuals	8p23.3	NR	rs12676991-T	0.9416	9E-7		1.1772	[0.71-1.65] mmHg increase	Affymetrix, Illumina [NR] (imputed)	N
593	chr8	1131479	1131480	rs7818243	31123309	Rayner C	2019-05-23	Transl Psychiatry	A genome-wide association meta-analysis of prognostic outcomes following cognitive behavioural therapy in individuals with anxiety and depressive disorders.	Response to cognitive-behavioural therapy in anxiety disorder	972 European ancestry adult cases	NA	8p23.3	ERICH1-AS1, LOC286083	rs7818243-C	0.28	4E-6		0.22	[0.12-0.32] unit increase	Illumina [at least 4710000] (imputed)	N
593	chr8	1138291	1138292	rs34582125	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Tumor necrosis factor beta levels	1,559 Finnish ancestry individuals	NA	8p23.3	NR	rs34582125-G		9E-6		0.1617	[0.09-0.233] SD units increase	NR [10700000] (imputed)	N
593	chr8	1149027	1149028	rs12547340	30306274	Shah RL	2018-10-10	Hum Genet	Genome-wide association studies for corneal and refractive astigmatism in UK Biobank demonstrate a shared role for myopia susceptibility loci.	Refractive astigmatism	88,005 European ancestry individuals		8p23.3	DLGAP2	rs12547340-G	0.79	4E-6		0.016	[0.0082-0.0238] dioptres increase	NR [5900115] (imputed)	N
593	chr8	1149245	1149246	rs11986808	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8p23.3	ERICH1	rs11986808-?	NR	3E-7	(xanthurenate)	0.19686499	[0.12-0.27] unit decrease	Affymetrix [at least 2500000] (imputed)	N
593	chr8	1153197	1153198	rs17062789	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Time-dependent creatinine clearance change response to tenofovir treatment in HIV infection (time and treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	8p23.3	NR	rs17062789-?		3E-7	(Hispanic)			Illumina [~ 5140000] (imputed)	N
593	chr8	1153430	1153431	rs17062791	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Time-dependent creatinine clearance change response to tenofovir treatment in HIV infection (time and treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	8p23.3	NR	rs17062791-?		2E-7	(Hispanic)			Illumina [~ 5140000] (imputed)	N
593	chr8	1153430	1153431	rs17062791	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Time-dependent creatinine clearance change response to tenofovir treatment in HIV infection (time and treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	8p23.3	NR	rs17062791-?		2E-7	(Hispanic)			Illumina [~ 5140000] (imputed)	N
593	chr8	1153644	1153645	rs73670671	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Time-dependent creatinine clearance change response to tenofovir treatment in HIV infection (time and treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	8p23.3	NR	rs73670671-?		3E-7	(Hispanic)			Illumina [~ 5140000] (imputed)	N
593	chr8	1156130	1156131	rs34003842	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Time-dependent creatinine clearance change response to tenofovir treatment in HIV infection (time and treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	8p23.3	NR	rs34003842-?		2E-7	(Hispanic)			Illumina [~ 5140000] (imputed)	N
593	chr8	1157179	1157180	rs75416360	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	8p23.3	Intergenic	rs75416360-T	0.0589	5E-8	(MTAG)	0.0153	[0.0098-0.0208] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
593	chr8	1164069	1164070	rs80058639	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (Multivariate)	1,390 European ancestry individuals	NA	8p23.3		rs80058639-?	NR	9E-6	(MLM)			Illumina [~ 9000000] (imputed)	N
593	chr8	1170294	1170295	rs11779163	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8p23.3	ERICH1	rs11779163-?	NR	7E-6	(oxalate)	0.19865362	[0.11-0.29] unit increase	Affymetrix [at least 2500000] (imputed)	N
593	chr8	1175130	1175131	rs13263535	33568662	Dashti HS	2021-02-10	Nat Commun	Genetic determinants of daytime napping and effects on cardiometabolic health.	Daytime nap	452,633 European ancestry individuals	541,333 European ancestry individuals	8p23.3	DLGAP2, ERICH1	rs13263535-G		3E-13		0.0062	[0.0044-0.008] unit increase	Affymetrix [13304133] (imputed)	N
594	chr8	1192437	1192438	rs4976875	29559693	Zengini E	2018-03-20	Nat Genet	Genome-wide analyses using UK Biobank data provide insights into the genetic architecture of osteoarthritis.	Osteoarthritis (self-reported)	12,658 European ancestry cases, 50,898 European ancestry controls		8p23.3	NR	rs4976875-G	0.723421	6E-6		1.07678	[1.04381-1.11078]	Affymetrix [16499239] (imputed)	N
594	chr8	1216766	1216767	rs34130287	28441426	White CC	2017-04-25	PLoS Med	Identification of genes associated with dissociation of cognitive performance and neuropathological burden: Multistep analysis of genetic, epigenetic, and transcriptional data.	Residual cognition	979 European ancestry individuals	NA	8p23.3	LOC286083	rs34130287-C	0.21	4E-6		0.25	[NR] z score decrease	Affymetrix, Illumina [~ 7000000] (imputed)	N
594	chr8	1244223	1244224	rs17669535	23599027	Demerath EW	2013-04-17	Hum Mol Genet	Genome-wide association study of age at menarche in African-American women.	Menarche (age at onset)	18,089 African American individuals	2,850 African American individuals, 87,802 European ancestry inidividuals	8p23.3	DLGAP2	rs17669535-C	0.97	6E-7	(AA)	14.5	[8.80-20.20] unit increase	Affymetrix, Illumina [NR] (imputed)	N
594	chr8	1248399	1248400	rs17747701	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	8p23.3	NR	rs17747701-?	NR	3E-6		4.705	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
594	chr8	1262483	1262484	rs62483956	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels	3,806 African American individuals	NA	8p23.3		rs62483956-?	NR	1E-6		0.11	[0.065-0.155] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
594	chr8	1270669	1270670	rs28719689	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	8p23.3	Intergenic	rs28719689-?	NR	4E-6		1.584	[NR]	Affymetrix [492217] (imputed)	N
594	chr8	1291288	1291289	rs17754574	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	8p23.3	NR	rs17754574-?	NR	7E-6		0.269477	[0.15-0.39] unit increase	NR [13958389] (imputed)	N
594	chr8	1299877	1299878	rs144606178	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	8p23.3	NR	rs144606178-?	NR	6E-6	(Native Hawaiian)	0.5584	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
595	chr8	1328237	1328238	rs10106591	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Victivallis sp002998355 abundance in stool	5,959 Finnish ancestry individuals	NA	8p23.3		rs10106591-A	0.0208837	4E-8		0.338026	[0.22-0.46] unit increase	Illumina [7980478] (imputed)	N
595	chr8	1368931	1368932	rs77102936	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin I concentration	1,606 African American individuals	NA	8p23.3		rs77102936-?	NR	3E-6		0.37	[0.22-0.52] unit increase	Affymetrix, Illumina [NR] (imputed)	N
595	chr8	1369018	1369019	rs2404298	29885931	Langefeld CD	2018-06-06	Kidney Int	Genome-wide association studies suggest that APOL1-environment interactions more likely trigger kidney disease in African Americans with nondiabetic nephropathy than strong APOL1-second gene interactions.	End-stage renal disease	1,749 African American ESRD cases, 1,136 African American controls, 901 African American lupus nephritis-ESRD cases, 520 African American systemic lupus erythrematosus without nephropathy controls	NA	8p23.3	DLGAP2	rs2404298-?		1E-6		1.55	[1.29-1.85]	Illumina [NR]	N
595	chr8	1369018	1369019	rs2404298	29885931	Langefeld CD	2018-06-06	Kidney Int	Genome-wide association studies suggest that APOL1-environment interactions more likely trigger kidney disease in African Americans with nondiabetic nephropathy than strong APOL1-second gene interactions.	End stage renal disease in APOL1 risk genotype-negative individuals	945 African American ESRD cases, 988 African American controls, 678 African American lupus nephritis-ESRD cases, 465 African American systemic lupus erythrematosus without nephropathy controls	NA	8p23.3	NR	rs2404298-?	NR	4E-7		1.76		Illumina [NR]	N
595	chr8	1373719	1373720	rs28680850	24886709	Ko A	2014-06-02	Nat Commun	Amerindian-specific regions under positive selection harbour new lipid variants in Latinos.	Triglycerides	1,678 Mexican ancestry high triglyceride cases, 1,645 Mexican ancestry low triglyceride controls	2,129 Mexican ancestry high triglyceride cases, 2,985 Mexican ancestry low triglyceride controls, 903 Mexican ancestry individuals from 73 dyslipidemic families	8p23.3	LOC286083, DLGAP2	rs28680850-A	NR	7E-9		1.26	[1.15-1.39]	Illumina [1661241] (imputed)	N
595	chr8	1418893	1418894	rs28367414	29594489	Apewokin S	2018-03-28	Support Care Cancer	Host genetic susceptibility to Clostridium difficile infections in patients undergoing autologous stem cell transplantation: a genome-wide association study.	Clostridium difficile infection in multiple myeloma	57 European ancestry cases, 589 European ancestry controls	NA	8p23.3	NR	rs28367414-?		3E-6				Illumina [892589]	N
596	chr8	1447293	1447294	rs73172574	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Melanoma	3,122 White British ancestry cases, 271,708 White British ancestry controls	NA	8p23.3		rs73172574-?	NR	3E-6		1.22488	[1.14-1.31]	NR [674885]	N
596	chr8	1455174	1455175	rs182302106	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	8p23.3	DLGAP2	rs182302106-G	0.999	2E-6	(AA)	0.45	unit increase	Illumina [NR] (imputed)	N
596	chr8	1456067	1456068	rs192316701	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	8p23.3	DLGAP2	rs192316701-C	0.997	5E-6	(AA)	0.163	unit increase	Illumina [NR] (imputed)	N
596	chr8	1462267	1462268	rs2404618	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	8p23.3	DLGAP2	rs2404618-T	0.465822007	7E-6		1.0544931	[1.030451547-1.07909551]	Illumina [10439017] (imputed)	N
596	chr8	1495946	1495947	rs3812479	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	8p23.3	NR	rs3812479-A	NR	6E-9		5.827	z score increase	Affymetrix [10847151] (imputed)	N
596	chr8	1519471	1519472	rs1971655	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling miserable	376,097 European ancestry individuals	NA	8p23.3	ERICH1-AS1	rs1971655-T	0.492095	2E-8		5.6	z score increase	NR [10847151] (imputed)	N
596	chr8	1532046	1532047	rs7014992	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	8p23.3	NR	rs7014992-A	NR	2E-8		5.59	z score increase	Affymetrix [10847151] (imputed)	N
596	chr8	1566504	1566505	rs2957086	34337522	van der Zanden LFM	2021-04-24	Eur Urol Open Sci	<i>CDH12</i> as a Candidate Gene for Kidney Injury in Posterior Urethral Valve Cases: A Genome-wide Association Study Among Patients with Obstructive Uropathies.	Kidney injury 5 years post-surgery in obstructive uropathies	141 European ancestry cases, 216 European ancestry controls	NA	8p23.3		rs2957086-G	NR	9E-6	(adjusted)	2.1		Illumina [622697] (imputed)	N
597	chr8	1572873	1572874	rs112455974	32693751	Keene KL	2020-07-22	Stroke	Genome-Wide Association Study Meta-Analysis of Stroke in 22 000 Individuals of African Descent Identifies Novel Associations With Stroke.	Stroke	3,734 African ancestry cases, 18,317 African ancestry controls	NA	8p23.3	DLGAP2	rs112455974-A	NR	4E-7		1.97	[1.72-2.25]	Affymetrix, Illumina [~ 16900000] (imputed)	N
597	chr8	1588224	1588225	rs4875884	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	8p23.3	NR	rs4875884-T	NR	4E-8		5.486	z score decrease	Affymetrix [10847151] (imputed)	N
597	chr8	1617626	1617627	rs138412709	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Alcohol consumption x traumatic event in childhood (felt hated by family member) interaction	46,394 European ancestry individuals	NA	8p23.3		rs138412709-?	NR	2E-9		2.9509	[1.99-3.91] unit increase	Affymetrix [NR] (imputed)	N
597	chr8	1625731	1625732	rs59811079	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	8p23.3	DLGAP2	rs59811079-G	0.716	3E-6		1.0640675		NR [9372253] (imputed)	N
597	chr8	1655022	1655023	rs116950932	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (severe respiratory symptoms vs population)	1,128 European ancestry cases, 679,531 European ancestry controls, 245 Hispanic or Latin American cases, 94,237 Hispanic or Latin American controls, 74 Black or African American cases, 22,383 Black or African American controls	NA	8p23.3		rs116950932-?	NR	3E-6		0.3445323	[0.2-0.49] unit increase	Illumina [9906551] (imputed)	N
597	chr8	1672181	1672182	rs147625268	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (processing speed) x major depressive disorder interaction (2df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	8p23.3		rs147625268-A	0.99	6E-9				NR [NR] (imputed)	N
597	chr8	1672181	1672182	rs147625268	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (processing speed)	9,567 European ancestry individuals	NA	8p23.3		rs147625268-A	0.99	2E-6		0.59	[0.34-0.84] unit decrease	NR [NR] (imputed)	N
597	chr8	1681732	1681733	rs2972180	29921221	Cha S	2018-06-19	BMC Genomics	Identification of five novel genetic loci related to facial morphology by genome-wide association studies.	Eye morphology	5,643 Korean ancestry individuals	1,926 Korean ancestry individuals	8p23.3	DLGAP2, CLN8	rs2972180-T	0.18	8E-8	(Left eye angle of ex-ps)	0.543	[NR] unit increase	Affymetrix [311944]	N
598	chr8	1706206	1706207	rs6558530	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Systolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	8p23.3	intergenic	rs6558530-G	0.669	5E-8		0.254	[0.16-0.35] unit increase	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
598	chr8	1706206	1706207	rs6558530	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Systolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	8p23.3	intergenic	rs6558530-G	0.669	5E-7	(EA, initial)	0.406	[0.25-0.56] unit increase	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
598	chr8	1719493	1719494	rs34030778	28736931	Rotroff DM	2017-07-24	Clin Pharmacol Ther	Genetic Variants in HSD17B3, SMAD3, and IPO11 Impact Circulating Lipids in Response to Fenofibrate in Individuals With Type 2 Diabetes.	Total cholesterol change in response to fenofibrate in statin-treated type 2 diabetes	781 European ancestry individuals, 138 African American ancestry individuals, 345 unknown ancestry individuals		8p23.3	CLN8	rs34030778-?	NR	4E-8	(AA)	0.124	unit increase	Affymetrix, Illumina [8129838] (imputed)	N
598	chr8	1721089	1721090	rs4875958	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	NA		CLN8	rs4875958-G	0.2881	2E-11		0.2256	[0.16-0.29] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
598	chr8	1746949	1746950	rs11986414	22388998	Zhang CK	2012-01-19	Am J Hematol	Genome-wide association study of N370S homozygous Gaucher disease reveals the candidacy of CLN8 gene as a genetic modifier contributing to extreme phenotypic variation.	Gaucher disease severity	139 Ashkenazi Jewish cases	NA	8p23.3	CLN8	rs11986414-A	NR	1E-6	(Gaucher disease 1 severity)	3.72	[2.19-6.31]	Illumina [540902]	N
598	chr8	1772640	1772641	rs10090061	33597122	Verbitsky M	2021-02-17	J Am Soc Nephrol	Copy Number Variant Analysis and Genome-wide Association Study Identify Loci with Large Effect for Vesicoureteral Reflux.	Vesicoureteral reflux	1,395 European ancestry cases, 5,366 European ancestry controls	NA	8p23.3	NR	rs10090061-A	0.272	4E-7	(additive, male)	0.60404897	[0.496730327872602-0.734553828606293]	Affymetrix, Illumina [6131010] (imputed)	N
598	chr8	1784363	1784364	rs11988258	32349335	Lundback V	2020-04-27	Cells	Genome-Wide Association Study of Diabetogenic Adipose Morphology in the GENetics of Adipocyte Lipolysis (GENiAL) Cohort.	Adipose morphology	894 individuals	NA	8p23.3	NR	rs11988258-A	0.4201	4E-6		34.0	[-48--20] unit decrease	NR [9714326] (imputed)	N
598	chr8	1830274	1830275	rs2280885	29246731	de Toro-Martin J	2017-11-02	J Clin Lipidol	A common variant in ARHGEF10 alters delta-6 desaturase activity and influence susceptibility to hypertriglyceridemia.	Delta-6 desaturase activity response to n3-polyunsaturated fat supplement	81 extreme responder individuals, 60 non-responder individuals	NA	8p23.3	ARHGEF10	rs2280885-G	0.13	9E-9		0.043	[0.023-0.063] unit increase	Illumina [2668805]	N
599	chr8	1839972	1839973	rs4292733	29885931	Langefeld CD	2018-06-06	Kidney Int	Genome-wide association studies suggest that APOL1-environment interactions more likely trigger kidney disease in African Americans with nondiabetic nephropathy than strong APOL1-second gene interactions.	End-stage renal disease	1,749 African American ESRD cases, 1,136 African American controls, 901 African American lupus nephritis-ESRD cases, 520 African American systemic lupus erythrematosus without nephropathy controls	NA	8p23.3	ARHGEF10	rs4292733-?		2E-6		1.33	[1.18-1.50]	Illumina [NR]	N
599	chr8	1857292	1857293	rs2294035	31372216	Haaland OA	2019-06-24	F1000Res	A genome-wide scan of cleft lip triads identifies parent-of-origin interaction effects between ANK3 and maternal smoking, and between ARHGEF10 and alcohol consumption.	Cleft lip with or without cleft palate x maternal periconceptional alcohol use interaction (parent of origin effect)	825 European ancestry case-parent duos or trios, 1,024 Asian ancestry case-parent duos or trios, 59 case-parent duos or trios	NA	8p23.3	ARHGEF10	rs2294035-?	NR	3E-6	(EA)	0.31	[0.19-0.51]	NR [341191]	N
599	chr8	1873539	1873540	rs2272613	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal cancer	978 Austrian ancestry colorectal cancer cases, 636 Austrian ancestry advanced colorectal adenoma cases, 4,294 European ancestry controls	NA	8p23.3	Intergenic	rs2272613-?		2E-6		1.504	[NR]	Affymetrix [492217] (imputed)	N
599	chr8	1883351	1883352	rs13279485	23412934	Gourraud PA	2013-02-13	Brain	A genome-wide association study of brain lesion distribution in multiple sclerosis.	Multiple sclerosis	284 European ancestry individuals		8p23.3	ARHGEF10	rs13279485-?		1E-6	(Cluxel size)			Illumina [208975]	N
599	chr8	1884838	1884839	rs80218807	31809533	Han X	2019-09-06	Hum Mol Genet	Genome-wide association analysis of 95 549 individuals identifies novel loci and genes influencing optic disc morphology.	Optic disc size	67,040 British ancestry individuals	28,509 European ancestry individuals	8p23.3	ARHGEF10	rs80218807-T	0.11	3E-8		0.02	unit increase	Affymetrix [8928767] (imputed)	N
599	chr8	1902749	1902750	rs7386942	30369944	Balakrishnan P	2018-10-12	Front Genet	Genetic Variants Related to Cardiometabolic Traits Are Associated to B Cell Function, Insulin Resistance, and Diabetes Among AmeriCan Indians: The Strong Heart Family Study.	HOMA-B (corrected for HOMA-IR)	1,892 American Indian ancestry individuals	NA	8p23.3	ARHGEF10	rs7386942-?	0.48	4E-7		14.43	unit decrease	Illumina [120975] (imputed)	N
599	chr8	1932653	1932654	rs6558570	30954325	Kamboh MI	2019-03-11	Neurobiol Aging	Population-based genome-wide association study of cognitive decline in older adults free of dementia: identification of a novel locus for the attention domain.	Age-related cognitive decline (executive function) (slope of z-scores)	1,145 European ancestry individuals	NA	8p23.3	KBTBD11	rs6558570-T	0.43	9E-6		0.19	unit increase	Illumina [5600000] (imputed)	N
599	chr8	1943088	1943089	rs4517166	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8p23.3	KBTBD11	rs4517166-A	0.698121	9E-9	(-26 ms)	0.0358529	[0.024-0.048] unit increase	Affymetrix [10000000] (imputed)	N
599	chr8	1943088	1943089	rs4517166	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8p23.3	KBTBD11	rs4517166-A	0.698121	1E-9	(-24 ms)	0.0377329	[0.026-0.05] unit increase	Affymetrix [10000000] (imputed)	N
599	chr8	1943088	1943089	rs4517166	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8p23.3	KBTBD11	rs4517166-A	0.698121	1E-8	(-22 ms)	0.0348173	[0.023-0.047] unit increase	Affymetrix [10000000] (imputed)	N
599	chr8	1948915	1948916	rs36027367	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid vs negative)	9,913 European ancestry cases, 85,072 European ancestry controls, 2,553 Hispanic or Latin American cases, 13,086 Hispanic or Latin American controls, 506 Black or African American cases, 3,110 Black or African American controls	NA	8p23.3		rs36027367-?	NR	7E-6		0.06608382	[0.037-0.095] unit increase	Illumina [9939936] (imputed)	N
599	chr8	1951299	1951300	rs13263558	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	8p23.3	KBTBD11	rs13263558-A	0.062	3E-6	(MCP1 )	0.04	[NR] pg/mL increase	Illumina [899892]	N
600	chr8	1969725	1969726	rs6558578	24700089	Miura K	2014-04-04	J Med Virol	Genome-wide association study of HPV-associated cervical cancer in Japanese women.	Cervical cancer	226 Japanese ancestry cases, 186 Japanese ancestry controls	NA	8p23.3	intergenic	rs6558578-G	0.7608	7E-6		2.31	[1.59-3.34]	Affymetrix [556045]	N
600	chr8	2002028	2002029	rs7464436	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation-estimated plasminogen activator inhibitor-1 levels	34,448 European ancestry individuals, 6,149 African American individuals	NA	8p23.3	NR	rs7464436-?	NR	2E-17				Affymetrix, Illumina [6211016] (imputed)	N
600	chr8	2017414	2017415	rs17064642	34158603	Liu X	2021-06-22	Pharmacogenomics J	New genetic variants associated with major adverse cardiovascular events in patients with acute coronary syndromes and treated with clopidogrel and aspirin.	Major adverse cardiovascular events in response to aspirin and clopidogrel treatment	51 Han Chinese ancestry cases, 117 Han Chinese ancestry controls	123 Han Chinese ancestry cases, 1,580 Han Chinese ancestry controls	8p23.3		rs17064642-C	0.064	2E-7		2.4	[1.59-3.63]	NR [127834]	N
600	chr8	2027724	2027725	rs4389966	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8p23.3	NR	rs4389966-G	0.01742	3E-8	(MT1H)	0.04572	NR unit increase	Illumina [1671387] (imputed)	N
600	chr8	2040103	2040104	rs2235121	20889312	Wang KS	2010-10-01	Schizophr Res	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	8p23.3	NR	rs2235121-?	NR	8E-6		1.221	[NR]	Affymetrix [722112]	N
600	chr8	2061792	2061793	rs77029955	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		MYOM2	rs77029955-?	NR	4E-8		0.24	[NR] unit increase	Affymetrix [NR] (imputed)	N
600	chr8	2082244	2082245	rs36098404	31936517	Cox JW	2020-01-09	J Clin Med	Genome-Wide Association Study of Opioid Cessation.	Opioid use cessation	1,130 African American individuals, 2,919 European ancestry individuals	NA	8p23.3	SEPT14	rs36098404-G	0.11	1E-6		1.39	[NR]	Illumina [NR] (imputed)	N
600	chr8	2082244	2082245	rs36098404	31936517	Cox JW	2020-01-09	J Clin Med	Genome-Wide Association Study of Opioid Cessation.	Opioid use cessation	1,130 African American individuals, 2,919 European ancestry individuals	NA	8p23.3	MYOM2	rs36098404-G	0.07	4E-6	(EA)	1.72	[NR]	Illumina [NR] (imputed)	N
601	chr8	2113775	2113776	rs17685410	25343990	Cornelis MC	2014-10-24	Hum Mol Genet	Genome-wide association study of selenium concentrations.	Toenail selenium levels	4,162 European ancestry individuals	NA	8p23.3	MYOM2, CSMD1, KBTBD11, ARHGEF10	rs17685410-A	0.3	2E-6		0.018	[0.010-0.026] unit increase	Affymetrix, Illumina [2378986] (imputed)	N
601	chr8	2128785	2128786	rs11987758	24529757	Xie T	2014-01-17	Neurobiol Aging	Genome-wide association study combining pathway analysis for typical sporadic amyotrophic lateral sclerosis in Chinese Han populations.	Amyotrophic lateral sclerosis (sporadic)	250 Han Chinese ancestry cases, 250 Han Chinese ancestry controls	NA	8p23.3	LOC100286951	rs11987758-?		8E-7				Illumina [859311]	N
601	chr8	2139470	2139471	rs4876208	30946743	Li Z	2019-04-04	PLoS Genet	Genome-wide association study in Turkish and Iranian populations identify rare familial Mediterranean fever gene (MEFV) polymorphisms associated with ankylosing spondylitis.	Ankylosing spondylitis	921 Turkish ancestry cases, 907 Turkish ancestry controls, 422 Iranian ancestry cases, 754 Iranian ancestry controls	NA	8p23.3	MYOM2	rs4876208-C	NR	6E-6		1.37	[1.20-1.57]	Illumina [up to 294091]	N
601	chr8	2152674	2152675	rs7011427	33967749	Ooi BNS	2021-04-22	Front Pharmacol	Robust Performance of Potentially Functional SNPs in Machine Learning Models for the Prediction of Atorvastatin-Induced Myalgia.	Atorvastatin-induced myalgia	14 Chinese ancestry cases, 74 Chinese ancestry controls, 12 Indian ancestry cases, 45 Indian ancestry controls, 4 Malay ancestry cases, 34 Malay ancestry controls	NA			rs7011427-?	NR	5E-6		8.345	[3.369-20.67]	Illumina [4554532]	N
601	chr8	2176909	2176910	rs4876199	25130324	Cai DC	2014-08-29	Genes Brain Behav	A genome-wide search for quantitative trait loci affecting the cortical surface area and thickness of Heschl's gyrus.	Heschl's gyrus morphology	1,778 European ancestry individuals, 1,276 individuals	NA	8p23.3	MYOM2	rs4876199-T	0.87	4E-6	(Right HG thickness)	0.0515	unit decrease	Affymetrix, Illumina [4103035] (imputed)	N
601	chr8	2226152	2226153	rs7844919	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental longevity (mother's age at death)	52,776 middle-aged British individuals	NA	8p23.3	NR	rs7844919-?	NR	3E-6		0.02941	[0.017-0.042] unit decrease	Affymetrix [9658292] (imputed)	N
603	chr8	2362712	2362713	rs75881021	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		AC245519.1	rs75881021-?	NR	8E-11		0.58	[NR] unit increase	Affymetrix [NR] (imputed)	N
603	chr8	2362712	2362713	rs75881021	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		AC245519.1	rs75881021-?	NR	5E-8	(male)	0.549374	[NR] unit increase	Affymetrix [NR] (imputed)	N
603	chr8	2420854	2420855	rs17070492	29566793	Nicolas A	2018-03-21	Neuron	Genome-wide Analyses Identify KIF5A as a Novel ALS Gene.	Amyotrophic lateral sclerosis	20,806 European ancestry cases, 59,804 European ancestry controls	4,159 cases, 18,650 controls	8p23.2	LOC101927815	rs17070492-?	0.095	1E-7	(EA)	1.13	[1.08-1.19]	Illumina [10031630] (imputed)	N
604	chr8	2490536	2490537	rs4875839	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	8p23.2	CSMD1	rs4875839-?		7E-10				Affymetrix, Illumina [NR] (imputed)	N
604	chr8	2502826	2502827	rs9644330	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8p23.2	MYOM2	rs9644330-?	NR	8E-6	(uridine diphosphate)	0.26704124	[0.15-0.38] unit decrease	Affymetrix [at least 2500000] (imputed)	N
604	chr8	2506898	2506899	rs10097215	24823311	Guan W	2014-05-13	Circ Cardiovasc Genet	Genome-wide association study of plasma N6 polyunsaturated fatty acids within the cohorts for heart and aging research in genomic epidemiology consortium.	Plasma omega-6 polyunsaturated fatty acid levels (gamma-linolenic acid)	8,631 European ancestry individuals	NA	8p23.2	CSMD1	rs10097215-T	0.122	2E-6		0.01	[NR] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
604	chr8	2546493	2546494	rs75199970	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8p23.2	NR	rs75199970-T	0.01045	2E-8	(UGT2B15)	0.5304	NR unit increase	Illumina [1671387] (imputed)	N
604	chr8	2550801	2550802	rs13277810	30787307	Daya M	2019-02-20	Nat Commun	Association study in African-admixed populations across the Americas recapitulates asthma risk loci in non-African populations.	Adult asthma	4,235 African American Afro-Caribbean cases, 5,283 African American Afro-Caribbean controls, 2774 Hispanic cases, 2,362 Hispanic controls	NA	8p23.2	LOC101927815	rs13277810-T	0.12	3E-8		1.26	[1.17-1.37]	Affymetrix, Illumina [23328733] (imputed)	N
604	chr8	2578519	2578520	rs17076051	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 1 levels	252 European ancestry individuals	NA	8p23.2		rs17076051-C	NR	1E-5		5.9996	[3.39-8.61] unit increase	Illumina [NR] (imputed)	N
605	chr8	2626134	2626135	rs969476	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8p23.2	NR	rs969476-A	0.1045	5E-9	(RMDN3)	0.00614	NR unit increase	Illumina [1671387] (imputed)	N
605	chr8	2666142	2666143	rs55798132	30220432	Haas ME	2018-09-06	Am J Hum Genet	Genetic Association of Albuminuria with Cardiometabolic Disease and Blood Pressure.	Urinary albumin excretion	382,500 European ancestry individuals	NA	8p23.2	LOC101927815, CSMD1	rs55798132-G	0.989	3E-8		0.04472	[0.029-0.06] unit increase	Affymetrix [11709857] (imputed)	N
605	chr8	2684333	2684334	rs2978336	28084903	Hallberg P	2017-01-13	Pharmacogenomics	Genetic variants associated with angiotensin-converting enzyme inhibitor-induced cough: a genome-wide association study in a Swedish population.	Cough in response to angiotensin-converting enzyme inhibitor drugs	123 European ancestry cases, 1,345 European and unknown ancestry controls, 1 Middle Eastern ancestry case	NR	8p23.2	Intergenic	rs2978336-?	NR	4E-6		3.31	[1.99-5.5]	Illumina [8600000] (imputed)	N
605	chr8	2709106	2709107	rs2124153	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8p23.2	MYOM2	rs2124153-?	NR	6E-6	(TAG 46:1)	0.17705896	[0.1-0.25] unit increase	Affymetrix [at least 2500000] (imputed)	N
605	chr8	2709106	2709107	rs2124153	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8p23.2	MYOM2	rs2124153-?	NR	3E-6	(TAG 48:0)	0.18354034	[0.11-0.26] unit increase	Affymetrix [at least 2500000] (imputed)	N
605	chr8	2740501	2740502	rs641525	20709820	Kong X	2010-08-13	Am J Respir Crit Care Med	Genome-wide association study identifies BICD1 as a susceptibility gene for emphysema.	Emphysema-related traits	2,383 European ancestry cases	NA	8p23.2	CSMD1	rs641525-T	0.95	5E-7	(qualitative)	2.19	[NR]	Illumina [499578]	N
606	chr8	2780955	2780956	rs2627282	24165912	He J	2013-10-28	Circ Cardiovasc Genet	Genome-wide association study identifies 8 novel loci associated with blood pressure responses to interventions in Han Chinese.	Blood pressure measurement (high sodium intervention)	1,840 Han Chinese ancestry individuals	659 Han Chinese ancestry individuals	8p23.2	CSMD1	rs2627282-A	0.02	6E-7	(DBP, response to intervention)	2.29	[1.39-3.19] mmHg decrease	Affymetrix [2216774] (imputed)	N
606	chr8	2780955	2780956	rs2627282	24165912	He J	2013-10-28	Circ Cardiovasc Genet	Genome-wide association study identifies 8 novel loci associated with blood pressure responses to interventions in Han Chinese.	Blood pressure measurement (high sodium intervention)	1,840 Han Chinese ancestry individuals	659 Han Chinese ancestry individuals	8p23.2	CSMD1	rs2627282-A	0.02	3E-7	(MAP, response to intervention)	2.33	[1.45-3.21] mmHg decrease	Affymetrix [2216774] (imputed)	N
606	chr8	2819808	2819809	rs4875857	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	8p23.2	NR	rs4875857-C	0.177865535602329	5E-6	(IGP11)	0.1846	[0.11-0.26] unit increase	Illumina [~ 2500000] (imputed)	N
606	chr8	2840463	2840464	rs652282	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8p23.2	MYOM2	rs652282-?	NR	8E-6	(hydroxyproline)	0.2949232	[0.17-0.42] unit decrease	Affymetrix [at least 2500000] (imputed)	N
606	chr8	2874681	2874682	rs13276110	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Tea consumption	336,898 European ancestry individuals	39,924 European ancestry individuals	8p23.2	CSMD1	rs13276110-G	0.7723	1E-7		0.0097	[0.0062-0.0132] unit increase	Affymetrix [~ 7740000] (imputed)	N
606	chr8	2882468	2882469	rs57415150	32109421	Li C	2020-02-20	Am J Hum Genet	Genome-Wide Association Analysis in Humans Links Nucleotide Metabolism to Leukocyte Telomere Length.	Leukocyte telomere length	78,592 European ancestry individuals	NA	8p23.2	CSMD1	rs57415150-A	0.041653	4E-6		0.05841	[0.034-0.083] unit decrease	Affymetrix, Illumina, Perlegen [up to 30071938] (imputed)	N
607	chr8	2980122	2980123	rs9987128	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Inflammatory skin disease	2,079 European ancestry atopic dermatitis cases, 4,212 European ancestry psoriasis cases, 11,899 European ancestry controls	NA	8p23.2	CSMD1	rs9987128-?	NR	1E-6	(Psoriasis)			Affymetrix, Illumina [~ 5200000]	N
608	chr8	3028148	3028149	rs12056500	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8p23.2	NR	rs12056500-C	0.01045	3E-8	(PRDX3)	1.582	NR unit increase	Illumina [1671387] (imputed)	N
608	chr8	3032814	3032815	rs7827348	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8p23.2	MYOM2	rs7827348-?	NR	2E-6	(uridine)	0.2904505	[0.17-0.41] unit increase	Affymetrix [at least 2500000] (imputed)	N
608	chr8	3073488	3073489	rs77378271	27028160	Sherva R	2016-03-30	JAMA Psychiatry	Genome-wide Association Study of Cannabis Dependence Severity, Novel Risk Variants, and Shared Genetic Risks.	Cannabis dependence symptom count	Up to 6,000 African American ancestry individuals, 8,754 European ancestry individuals	At least 1,893 European ancestry individuals	8p23.2	CSMD1	rs77378271-A	0.94	5E-8	(EA)			Illumina [NR] (imputed)	N
608	chr8	3073488	3073489	rs77378271	27028160	Sherva R	2016-03-30	JAMA Psychiatry	Genome-wide Association Study of Cannabis Dependence Severity, Novel Risk Variants, and Shared Genetic Risks.	Cannabis dependence symptom count	Up to 6,000 African American ancestry individuals, 8,754 European ancestry individuals	At least 1,893 European ancestry individuals	8p23.2	CSMD1	rs77378271-A	0.94	2E-8				Illumina [NR] (imputed)	N
608	chr8	3075037	3075038	rs6981827	32701512	Cairns J	2020-07-23	JCI Insight	Pharmacogenomics of aromatase inhibitors in postmenopausal breast cancer and additional mechanisms of anastrozole action.	Estrogen level change in anastrozole-treated breast cancer	624 individuals	NA	8p23.2	CSMD1	rs6981827-C	0.0502	2E-8	(estrone and estradiol)	0.5978	[0.39-0.8] unit decrease	Illumina [up to 8000000] (imputed)	N
608	chr8	3075037	3075038	rs6981827	32701512	Cairns J	2020-07-23	JCI Insight	Pharmacogenomics of aromatase inhibitors in postmenopausal breast cancer and additional mechanisms of anastrozole action.	Estrogen level change in anastrozole-treated breast cancer	624 individuals	NA	8p23.2	CSMD1	rs6981827-?	NR	2E-8	(estrone)			Illumina [up to 8000000] (imputed)	N
608	chr8	3075037	3075038	rs6981827	32701512	Cairns J	2020-07-23	JCI Insight	Pharmacogenomics of aromatase inhibitors in postmenopausal breast cancer and additional mechanisms of anastrozole action.	Estrogen level change in anastrozole-treated breast cancer	624 individuals	NA	8p23.2	CSMD1	rs6981827-?	NR	2E-8	(estradiol)			Illumina [up to 8000000] (imputed)	N
608	chr8	3076958	3076959	rs28455997	24024966	Teumer A	2013-08-14	J Clin Periodontol	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (CDC/AAP)	up to 3,915 European ancestry individuals	NA	8p23.2	CSMD1	rs28455997-T	0.84	3E-6	(Age 20-60 years)	1.48	[1.26-1.75]	Affymetrix, Illumina [up to 17585496] (imputed)	N
608	chr8	3088172	3088173	rs73660619	23535033	Sherva R	2013-03-24	Alzheimers Dement	Genome-wide association study of the rate of cognitive decline in Alzheimer's disease.	Alzheimer's disease (cognitive decline)	303 European ancestry cases		8p23.2	CSMD1	rs73660619-?	0.06	8E-7		0.26	unit decrease	Illumina [NR] (imputed)	N
608	chr8	3088762	3088763	rs1540507	24024966	Teumer A	2013-08-14	J Clin Periodontol	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (CDC/AAP)	up to 3,915 European ancestry individuals	NA	8p23.2	CSMD1	rs1540507-?	0.78	9E-6	(Age 20-81 years)	1.47	[1.23-1.75]	Affymetrix, Illumina [up to 17585496] (imputed)	N
608	chr8	3091583	3091584	rs1442407	24058526	Bhatnagar P	2013-09-13	PLoS One	Genome-wide meta-analysis of systolic blood pressure in children with sickle cell disease.	Systolic blood pressure in sickle cell anemia	1617 African American cases	NA	8p23.2	CSMD1	rs1442407-T	0.1	8E-6		1.98	[1.12-2.84] mmHg increase	Illumina [1019297] (imputed)	N
608	chr8	3098639	3098640	rs141034411	29109912	Rawofi L	2017-11-02	PeerJ	Genome-wide association study of pigmentary traits (skin and iris color) in individuals of East Asian ancestry.	Iris color (b* coordinate)	377 East Asian ancestry individuals	NA	8p23.2	CSMD1	rs141034411-A	0.413	4E-6		0.352648	[0.21-0.5] unit increase	Illumina [at least 520076] (imputed)	N
608	chr8	3104831	3104832	rs17063092	31006051	Kharazmi M	2019-04-20	Calcif Tissue Int	A Genome-Wide Association Study of Bisphosphonate-Associated Atypical Femoral Fracture.	Atypical femoral fracture in phosphonate treatment	50 European ancestry cases, 1 Chilean ancestry case, 324 European ancestry controls	NA	8p23.2	CSMD1	rs17063092-C	0.238	5E-6		2.958	[1.86-4.703]	Illumina [7585874] (imputed)	N
608	chr8	3118778	3118779	rs7819937	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	8p23.2	MYOM2, LOC780813, CSMD1	rs7819937-?	0.58129	3E-6		2.5	[1.69-3.7]	Illumina [1556551]	N
608	chr8	3134238	3134239	rs11787412	31417091	Kou I	2019-08-15	Nat Commun	Genome-wide association study identifies 14 previously unreported susceptibility loci for adolescent idiopathic scoliosis in Japanese.	Adolescent idiopathic scoliosis	5,327 Japanese ancestry cases, 73,884 Japanese ancestry controls	NA	8p23.2	CSMD1	rs11787412-A	0.38	1E-9		1.14	[1.09-1.18]	Illumina [9332516] (imputed)	N
608	chr8	3134238	3134239	rs11787412	31417091	Kou I	2019-08-15	Nat Commun	Genome-wide association study identifies 14 previously unreported susceptibility loci for adolescent idiopathic scoliosis in Japanese.	Adolescent idiopathic scoliosis	5,004 Japanese ancestry female cases, 33,679 Japanese ancestry female controls	NA	8p23.2	CSMD1	rs11787412-A	0.384366	6E-9		1.14	[1.09-1.20]	Illumina [9332516] (imputed)	N
608	chr8	3139021	3139022	rs10780166	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8p23.2	NR	rs10780166-C	0.01045	5E-10	(NPC2)	0.1045	NR unit increase	Illumina [1671387] (imputed)	N
609	chr8	3147358	3147359	rs7829759	27515689	Kerns SL	2016-07-20	EBioMedicine	Meta-analysis of Genome Wide Association Studies Identifies Genetic Markers of Late Toxicity Following Radiotherapy for Prostate Cancer.	Response to radiotherapy in prostate cancer (overall toxicity)	1,346 European ancestry individuals	NA	8p23.2	Intergenic	rs7829759-A	0.11	4E-6		0.33	[0.19-0.47] unit increase	NR [~ 38000000] (imputed)	N
609	chr8	3156219	3156220	rs142816172	23568457	Wade TD	2013-04-09	Int J Eat Disord	Genetic variants associated with disordered eating.	Eating disorders (purging via substances)	600 European ancestry female cases, 1,921 European ancestry female controls	NA	8p23.2	CSMD1	rs142816172-C	0.976	6E-6		0.273	[0.16-0.39] unit decrease	Illumina [6150213] (imputed)	N
609	chr8	3172399	3172400	rs12156277	27629369	Gao J	2016-09-15	Neuropsychopharmacology	Genome-Wide Association Study of Loneliness Demonstrates a Role for Common Variation.	Loneliness	2,075 European ancestry cases, 3,875 European ancestry controls, 427 African American cases, 398 African American controls, 294 Hispanic cases, 327 Hispanic controls, 57 cases, 73 controls	NA	8p23.2	CSMD1	rs12156277-?	NR	2E-6	(EA)	0.0465	[0.027-0.066] unit decrease	Illumina [7176022] (imputed)	N
609	chr8	3173838	3173839	rs78442079	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Aspartate aminotransferase levels in low alcohol consumption	8,716 individuals	NA	8p23.2	NR	rs78442079-?	NR	5E-6		0.0639	[0.037-0.091] unit increase	Illumina [~ 7800000] (imputed)	N
609	chr8	3180989	3180990	rs72507671	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Spatial memory	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	8p23.2	CSMD1	rs72507671-C	NR	6E-6		0.23165236	[0.13-0.34] unit decrease	Illumina [> 6200000] (imputed)	N
609	chr8	3189895	3189896	rs2551043	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	8p23.2	CSMD1	rs2551043-G	0.234	7E-6	(Vigorous activity )	0.03	[NR] min/d increase	Illumina [899892]	N
609	chr8	3217407	3217408	rs112328442	31049640	Chen J	2019-05-02	Diabetologia	Genome-wide association study of type 2 diabetes in Africa.	Type 2 diabetes	2,633 African ancestry cases, 1,714 African ancestry controls	NA	8p23.2	CSMD1	rs112328442-C	0.98	9E-6		1.84	[1.42-2.38]	Affymetrix, Illumina [12148595] (imputed)	N
609	chr8	3219558	3219559	rs13268772	27922604	Yu H	2016-12-06	Mol Psychiatry	Common variants on 2p16.1, 6p22.1 and 10q24.32 are associated with schizophrenia in Han Chinese population.	Schizophrenia	4,384 Han Chinese ancestry cases and 5,770 Han Chinese ancestry controls	4,339 Han Chinese ancestry cases and 7,043 Han Chinese ancestry controls	8p23.2	CSMD1	rs13268772-?		9E-6		1.13	[1.08-1.18]	Illumina [at least 473583] (imputed)	N
609	chr8	3226223	3226224	rs13260434	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	8p23.2	NR	rs13260434-?	NR	2E-10				Affymetrix [NR]	N
609	chr8	3228966	3228967	rs13280606	34777790	A Christensen M	2021-10-13	Ann Med Surg (Lond)	An assessment of the effect of the genotype on postoperative venous thromboembolism risk in 140,831 surgical patients.	Postoperative venous thromboembolism	799 cases, 140,032 controls	NA	8p23.2		rs13280606-?	NR	8E-6				Affymetrix [254068]	N
609	chr8	3229729	3229730	rs17393453	28081215	Pardo LM	2017-01-12	PLoS One	Genome-Wide Association Studies of Multiple Keratinocyte Cancers.	Multiple keratinocyte cancers	2,106 European ancestry multiple keratinocyte cancer cases, 2,061 European ancestry single keratinocyte cancer cases, 135 European and unknown ancestry multiple keratinocyte cancer cases, 761 European and unknown ancestry single keratinocyte cancer cases	NA	8p23.2	CSMD1	rs17393453-A	NR	2E-6		4.734	NR z-score decrease	Affymetrix, Illumina [up to 9001799] (imputed)	N
610	chr8	3286732	3286733	rs67658161	31164008	Mullins N	2019-06-05	Am J Psychiatry	GWAS of Suicide Attempt in Psychiatric Disorders and Association With Major Depression Polygenic Risk Scores.	Suicide attempts in bipolar disorder	3,264 European ancestry attempters, 5,500 European ancestry nonattempters	NA	8p23.2	NR	rs67658161-A	0.48	3E-6		1.16	1.09-1.24	NR [8807005] (imputed)	N
610	chr8	3290338	3290339	rs12544202	30955190	Yun S	2019-04-06	Clin Exp Nephrol	Genetic risk score raises the risk of incidence of chronic kidney disease in Korean general population-based cohort.	Estimated glomerular filtration rate reduction (30%)	up to 3,617 Korean ancestry individuals	NA	8p23.2	CSMD1	rs12544202-?	NR	7E-6		1.443	[NR]	Affymetrix [up to 1590162] (imputed)	N
610	chr8	3305841	3305842	rs142700918	25241909	Lee JH	2014-09-21	Respir Res	Genetic susceptibility for chronic bronchitis in chronic obstructive pulmonary disease.	Chronic bronchitis and chronic obstructive pulmonary disease	up to 1,662 European ancestry cases, up to 3,520 European ancestry smoker controls, 182 African American cases, 1,749 African American smoker controls	NA	8p23.2	CSMD1	rs142700918-G	0.93	1E-6	(EA, COPDGene + GenKOLS)	1.78	[1.41-2.25]	Illumina [NR] (imputed)	N
610	chr8	3316985	3316986	rs17394429	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	8p23.2	CSMD1	rs17394429-A	0.11	7E-6	(Hcy )	0.03	[NR] umol/L increase	Illumina [899892]	N
610	chr8	3334337	3334338	rs10110203	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Lateral ventricle temporal horn volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	8p23.2	CSMD1	rs10110203-?		2E-6				Illumina [4322238] (imputed)	N
610	chr8	3344203	3344204	rs11777685	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (severe respiratory symptoms vs population)	1,128 European ancestry cases, 679,531 European ancestry controls, 245 Hispanic or Latin American cases, 94,237 Hispanic or Latin American controls, 74 Black or African American cases, 22,383 Black or African American controls	NA	8p23.2		rs11777685-?	NR	6E-6		0.2177648	[0.12-0.31] unit increase	Illumina [9906551] (imputed)	N
610	chr8	3344203	3344204	rs11777685	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid pneumonia vs population)	1,004 European ancestry cases, 680,354 European ancestry controls, 218 Hispanic or Latin American cases, 94,318 Hispanic or Latin American controls, 64 Black or African American cases, 22,412 Black or African American controls	NA	8p23.2		rs11777685-?	NR	1E-5		0.2257843	[0.13-0.33] unit increase	Illumina [9901720] (imputed)	N
610	chr8	3348852	3348853	rs1530615	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	8p23.2	CSMD1	rs1530615-A	NR	6E-6	(AA)			Illumina [up to 11995908] (imputed)	N
610	chr8	3363459	3363460	rs79021388	35131881	Testori A	2022-02-07	Cancer Epidemiol Biomarkers Prev	Genetic analysis in African American children supports ancestry specific neuroblastoma susceptibility.	Neuroblastoma	629 African American cases, 2,990 African American controls	NA	8p23.2		rs79021388-T	NR	9E-6		0.7825	unit increase	Illumina [8524982] (imputed)	N
610	chr8	3364037	3364038	rs10109725	26030696	Cho MH	2015-06-01	Am J Respir Crit Care Med	A Genome-Wide Association Study of Emphysema and Airway Quantitative Imaging Phenotypes.	Emphysema imaging phenotypes	5,385 European ancestry chronic obstructive pulmonary disease cases, 901 African American chronic obstructive pulmonary disease cases, 3,613 European ancestry controls, 2,132 African American controls	NA	8p23.2	CSMD1	rs10109725-T	NR	6E-7	(%LAA-950, All)	0.28	[0.0056-0.5544] unit increase	Illumina [7600000] (imputed)	N
611	chr8	3452261	3452262	rs11985561	26584805	Dorajoo R	2015-11-19	Genes Nutr	A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.	Plasma omega-3 polyunsaturated fatty acid levels (alphalinolenic acid)	717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls	NA	8p23.2	NR	rs11985561-C	0.1789561	4E-6		0.1081	[0.062-0.154] unit increase	Illumina [up to 1980188] (imputed)	N
611	chr8	3467642	3467643	rs80113388	27021288	Brevik EJ	2016-03-29	Am J Med Genet B Neuropsychiatr Genet	Genome-wide analyses of aggressiveness in attention-deficit hyperactivity disorder.	Aggressiveness in attention deficit hyperactivity disorder	1,060 European ancestry adult cases	NA	8p23.2	CSMD1	rs80113388-T		3E-6		4.3626	[2.54-6.18] unit decrease	Illumina [7576458] (imputed)	N
611	chr8	3478335	3478336	rs1600857	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	8p23.2	NR	rs1600857-?	NR	2E-6	(EA)	4.462215	[2.65-6.27] unit decrease	Affymetrix [at least 600000] (imputed)	N
611	chr8	3488337	3488338	rs2449215	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	8p23.2	CSMD1	rs2449215-G	0.38	7E-7	(Light activity )	0.04	[NR] %awake time increase	Illumina [899892]	N
611	chr8	3498170	3498171	rs11136645	26366535	Sood RF	2015-10-01	Ann Surg	Genome-wide Association Study of Postburn Scarring Identifies a Novel Protective Variant.	Postburn hypertrophic scarring severity	408 European ancestry individuals, 26 Asian ancestry individuals, 19 African American individuals, 11 Native American ancestry individuals, 74 individuals	NA	8p23.2	CSMD1	rs11136645-?		8E-8		0.23	[0.15-0.32] unit decrease	Illumina [289639]	N
611	chr8	3506724	3506725	rs17066769	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Pursuit maintenance gain	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	8p23.2	CSMD1	rs17066769-G	0.1866	9E-6				Illumina [4404269] (imputed)	N
611	chr8	3507128	3507129	rs2449202	25514360	Hansel NN	2014-12-16	Am J Respir Cell Mol Biol	Genome-Wide Association Study Identification of Novel Loci Associated with Airway Responsiveness in Chronic Obstructive Pulmonary Disease.	Airway responsiveness in chronic obstructive pulmonary disease	Up to 4,108 European American cases	NA	8p23.2	CSMD1	rs2449202-?	0.568	8E-6	(Dichotomous PC20)	1.2195122	[NR]	Illumina [546355]	N
611	chr8	3515618	3515619	rs10105578	29064910	Kure Fischer E	2017-10-23	Int Clin Psychopharmacol	A molecular pathway analysis informs the genetic risk for arrhythmias during antipsychotic treatment.	Antipsychotic drug-induced QTc interval change in schizophrenia	434 European ancestry individuals, 202 African ancestry individuals, 25 individuals	NA	8p23.2	NR	rs10105578-A	NR	3E-6		4280.0	unit decrease	Affymetrix, Perlegen [1785543] (imputed)	N
611	chr8	3518478	3518479	rs13259853	26030696	Cho MH	2015-06-01	Am J Respir Crit Care Med	A Genome-Wide Association Study of Emphysema and Airway Quantitative Imaging Phenotypes.	Percentage gas trapping	3,243 European ancestry chronic obstructive pulmonary disease cases, 901 African American chronic obstructive pulmonary disease cases,  3,062 European ancestry controls, 2,132 African American controls	NA	8p23.2	CSMD1	rs13259853-A	NR	1E-6	(Cases)	0.088	[0.045-0.131] unit decrease	Illumina [6900000] (imputed)	N
612	chr8	3552672	3552673	rs58910976	34177453	Swart PC	2021-06-10	Front Neurosci	A Genome-Wide Association Study and Polygenic Risk Score Analysis of Posttraumatic Stress Disorder and Metabolic Syndrome in a South African Population.	Post-traumatic stress disorder	260 South African Colored cases, 343 South African Colored controls	NA	8p23.2		rs58910976-?	NR	1E-6		0.3129	unit increase	Illumina [11927194] (imputed)	N
612	chr8	3568200	3568201	rs4518695	28525603	Ortega-Alonso A	2017-05-19	Schizophr Bull	Genome-Wide Association Study of Psychosis Proneness in the Finnish Population.	Psychosis proneness (revised social anhedonia scale)	4,025 Finnish ancestry individuals	NA	8p23.2	CSMD1	rs4518695-?		4E-6				Illumina [~ 9600000] (imputed)	N
612	chr8	3594905	3594906	rs2623702	22424883	Imboden M	2012-03-15	J Allergy Clin Immunol	Genome-wide association study of lung function decline in adults with and without asthma.	Pulmonary function decline	1,441 European ancestry asthma cases, 2,677 European ancestry controls	1,160 European ancestry asthma cases, 10,858 European ancestry controls	8p23.2	CSMD1	rs2623702-?	NR	9E-6	(FEV1/FVC decline in asthmatics)	0.3236	[0.18-0.47] unit decrease	Illumina [~ 2500000] (imputed)	N
612	chr8	3599211	3599212	rs12676490	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.2	CSMD1	rs12676490-G	NR	2E-9		0.0253134	[0.017-0.034] unit increase	Affymetrix [321114] (imputed)	N
612	chr8	3599211	3599212	rs12676490	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	8p23.2	CSMD1	rs12676490-G	NR	4E-8		0.0231202	[0.015-0.031] unit increase	Affymetrix [323858] (imputed)	N
612	chr8	3610761	3610762	rs144687096	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (hospitalized covid vs population)	613 European ancestry cases, 680,416 European ancestry controls, 140 Hispanic or Latin American cases, 94,327 Hispanic or Latin American controls, 49 Black or African American cases, 22,410 Black or African American controls	NA	8p23.2		rs144687096-?	NR	7E-6		0.7948426	[0.45-1.14] unit decrease	Illumina [9875426] (imputed)	N
612	chr8	3619751	3619752	rs2046197	30514930	Mukherjee S	2018-12-04	Mol Psychiatry	Genetic data and cognitively defined late-onset Alzheimer's disease subgroups.	Alzheimer's disease with visuospatial domain impairment	Up to 497 European ancestry cases, 3,447 European ancestry controls	NA	8p23.2	NR	rs2046197-C	0.59	3E-7		1.66	[1.46-1.86]	NR [up to 6398204] (imputed)	N
612	chr8	3620572	3620573	rs7001432	33590662	Heilbronner U	2021-02-15	Am J Med Genet B Neuropsychiatr Genet	"The Heidelberg Five" personality dimensions: Genome-wide associations, polygenic risk for neuroticism, and psychopathology 20 years after assessment.	Emotional lability	3,268 European ancestry individuals	NA	8p23.2	NR	rs7001432-C	0.9479	1E-6		0.2697	[0.16-0.38] unit decrease	Illumina [8348463] (imputed)	N
612	chr8	3628569	3628570	rs77465890	33381925	Buchanan VL	2020-12-30	Pediatr Obes	Genome-wide association study identifying novel variant for fasting insulin and allelic heterogeneity in known glycemic loci in Chilean adolescents: The Santiago Longitudinal Study.	Homeostasis model assessment of insulin resistance	543 Chilean individuals	NA	8p23.2	CSMD1	rs77465890-C	0.1	2E-8		0.322	[0.21-0.43] unit decrease	Illumina [NR] (imputed)	N
612	chr8	3654319	3654320	rs62479736	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	8p23.2	CSMD1	rs62479736-T	0.2915	4E-10		1.0245976		Affymetrix [11880941] (imputed)	N
613	chr8	3677986	3677987	rs7840128	28447399	Jia P	2017-04-26	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of HIV-associated neurocognitive disorder (HAND): A CHARTER group study.	Neurocognitive impairment in HIV-1 infection (dichotomous)	140 African American cases, 167 European ancestry cases, 53 Hispanic cases, 6 cases, 350 African American controls, 276 European ancestry controls, 46 Hispanic controls, 11 controls	NA	8p23.2	CSMD1	rs7840128-A		8E-6		2.17	[NR]	Affymetrix [NR]	N
613	chr8	3705806	3705807	rs13260600	27723756	Wang J	2016-10-10	Nat Genet	Genome-wide association analysis identifies variation in vitamin D receptor and other host factors influencing the gut microbiota.	Gut microbiota (beta diversity)	1,812 European ancestry individuals	371 European ancestry individuals	8p23.2	CSMD1	rs13260600-?	NR	5E-8		0.77	NR percent increase	Affymetrix, Illumina [6344846] (imputed)	N
613	chr8	3717467	3717468	rs2930353	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	8p23.2	Intergenic	rs2930353-?	NR	5E-6		1.363	[NR]	Affymetrix [492217] (imputed)	N
613	chr8	3742385	3742386	rs144241717	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	8p23.2	NR	rs144241717-?	NR	5E-8				Illumina [7760689] (imputed)	N
613	chr8	3743703	3743704	rs10113221	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Parasitemia in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	8p23.2	NR	rs10113221-?	NR	2E-6				Affymetrix [5486770] (imputed)	N
613	chr8	3757557	3757558	rs141951718	31073882	Plotnikov D	2019-05-09	Hum Genet	A commonly occurring genetic variant within the NPLOC4-TSPAN10-PDE6G gene cluster is associated with the risk of strabismus.	Strabismus	1,345 British ancestry cases, 65,349 British ancestry controls	116 cases, 5,084 controls	8p23.2	NR	rs141951718-A	0.01	8E-6	(EA)	1.92	[1.44-2.57]	Affymetrix [7469170] (imputed)	N
613	chr8	3767209	3767210	rs2688325	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	8p23.2	CSMD1	rs2688325-T	0.29	2E-9		0.03	[0.018-0.042] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
613	chr8	3767622	3767623	rs2688326	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	8p23.2		rs2688326-?	NR	9E-16				NR [~ 8900000] (imputed)	N
613	chr8	3778635	3778636	rs62480124	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	8p23.2	CSMD1, RNA5SP251	rs62480124-C	NR	3E-7	(sleep latency, weekdays)	0.946	[0.58-1.31] unit increase	Affymetrix [7141204] (imputed)	N
613	chr8	3778851	3778852	rs2627395	30920136	Stapleton CP	2019-02-27	Am J Transplant	The impact of donor and recipient common clinical and genetic variation on estimated glomerular filtration rate in a European renal transplant population.	Estimated glomerular filtration rate after 5 years in renal transplantation (donor effect)	Up to 2,921 European ancestry individuals	NA	8p23.2	CSMD1	rs2627395-T	NR	2E-7	(adjusted for clinical variables)			Illumina [up to 3951530] (imputed)	N
613	chr8	3791264	3791265	rs2688267	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8p23.2	MYOM2	rs2688267-?	NR	2E-6	(TAG 58:9)	0.1649826	[0.098-0.232] unit decrease	Affymetrix [at least 2500000] (imputed)	N
614	chr8	3808801	3808802	rs940145	30801121	O'Donnell S	2019-02-25	Inflamm Bowel Dis	The Unsolved Link of Genetic Markers and Crohn's Disease Progression: A North American Cohort Experience.	Crohn's disease (time to progression)	662 European ancestry individuals	NA	8p23.2	NR	rs940145-C	0.237037	4E-6				Illumina [5378266] (imputed)	N
614	chr8	3828137	3828138	rs1529316	19010793	Baranzini SE	2008-11-14	Hum Mol Genet	Genome-wide association analysis of susceptibility and clinical phenotype in multiple sclerosis.	Multiple sclerosis	978 European ancestry cases, 883 European ancestry controls	NA	8p23.2	CSMD1	rs1529316-?	0.47	2E-6		1.36	[NR]	Illumina [551642]	N
614	chr8	3836594	3836595	rs78957667	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8p23.2	NR	rs78957667-G	0.01045	3E-8	(GPX4)	0.01608	NR unit decrease	Illumina [1671387] (imputed)	N
614	chr8	3836594	3836595	rs78957667	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8p23.2	NR	rs78957667-G	0.01045	2E-8	(HNRNPH3)	0.08815	NR unit increase	Illumina [1671387] (imputed)	N
614	chr8	3836594	3836595	rs78957667	31151762	Gelernter J	2019-04-08	Biol Psychiatry	Genome-wide Association Study of Maximum Habitual Alcohol Intake in >140,000 U.S. European and African American Veterans Yields Novel Risk Loci.	Maximum habitual alcohol consumption	126,936 European ancestry individuals, 17,029 African American individuals	NA	8p23.2	NR	rs78957667-G	NR	5E-7	(AA)	0.305659	[0.19-0.42] unit decrease	Affymetrix [up to 6007810] (imputed)	N
614	chr8	3861334	3861335	rs17063188	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8p23.2	MYOM2	rs17063188-?	NR	4E-6	(PC 40:6)	0.22366163	[0.13-0.32] unit increase	Affymetrix [at least 2500000] (imputed)	N
614	chr8	3863110	3863111	rs17068510	26545630	Deming Y	2015-09-25	Neurobiol Aging	A potential endophenotype for Alzheimer's disease: cerebrospinal fluid clusterin.	Cerebrospinal fluid clusterin levels	300 Alzheimer's disease cases, 373 controls	NA	8p23.2	CSMD1	rs17068510-?		8E-6		0.291	[NR] unit increase	Illumina [5970354] (imputed)	N
614	chr8	3871526	3871527	rs56367447	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage colony stimulating factor levels	840 Finnish ancestry individuals	NA	8p23.2	NR	rs56367447-C	NR	2E-8		0.4967	[0.32-0.67] SD units increase	NR [10700000] (imputed)	N
614	chr8	3871848	3871849	rs17068543	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8p23.2	NR	rs17068543-C	0.01045	1E-9	(NPC2)	0.1019	NR unit increase	Illumina [1671387] (imputed)	N
614	chr8	3902829	3902830	rs79055631	32180562	Kulyte A	2020-01-25	Mol Metab	Genome-wide association study of adipocyte lipolysis in the GENetics of adipocyte lipolysis (GENiAL) cohort.	Stimulated adipocyte lipolysis	874 European ancestry individuals	NA	8p23.2	NR	rs79055631-G	0.946526	3E-6		0.148	[0.087-0.209] unit decrease	NR [9260588] (imputed)	N
614	chr8	3904005	3904006	rs17068729	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Dorea)	1,068 Japanese ancestry individuals	NA	8p23.2	CSMD1	rs17068729-A	0.34	7E-7		0.0367	[0.022-0.051] unit decrease	Illumina [6380737] (imputed)	N
614	chr8	3913059	3913060	rs183748570	31296530	Trendowski MR	2019-07-11	Clin Cancer Res	Clinical and Genome-Wide Analysis of Serum Platinum Levels after Cisplatin-Based Chemotherapy.	Serum platinum levels after completion of cisplatin chemotherapy	866 European ancestry individuals, 17 non-European ancestry individuals, 127 individuals	NR	8p23.2	NR	rs183748570-A	0.0147	3E-6		0.6129	[0.36-0.87] unit increase	Illumina [7305641] (imputed)	N
614	chr8	3919412	3919413	rs7015239	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Anti-saccade response	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	8p23.2	CSMD1	rs7015239-G	0.229	6E-6	(African)			Illumina [4404269] (imputed)	N
614	chr8	3928954	3928955	rs2552124	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Intake of total sugars	174,424 European ancestry individuals	NA	8p23.2	CSMD1	rs2552124-A	0.76	8E-6		0.86	[0.49-1.23] g/day increase	Affymetrix [10353649] (imputed)	N
615	chr8	3951044	3951045	rs17404163	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	8p23.2	Intergenic	rs17404163-A	0.881	4E-9	(MTAG)	0.0162	[0.011-0.022] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
615	chr8	3951044	3951045	rs17404163	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	8p23.2	Intergenic	rs17404163-A	0.881	3E-8		0.0166	[0.011-0.022] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
615	chr8	3978129	3978130	rs4875284	23698163	Gong J	2013-05-21	Nutrients	Genome-wide association study of serum selenium concentrations.	Serum selenium levels	582 European ancestry individuals	621 European ancestry individuals	8p23.2	CSMD1	rs4875284-?	NR	3E-6		0.201	[0.12-0.29] mg/dL decrease	Illumina [2474333]	N
615	chr8	4005736	4005737	rs200122069	29532581	Hallfors J	2018-03-13	Addict Biol	Genome-wide association study in Finnish twins highlights the connection between nicotine addiction and neurotrophin signaling pathway.	Nicotine withdrawal	540 Finnish ancestry cases and 1,163 Finnish ancestry controls from up to 739 families	NA	8p23.2	NR	rs200122069-T	0.019367	2E-6		0.2751281	[0.16-0.39] unit increase	Illumina [9469131] (imputed)	N
615	chr8	4013207	4013208	rs17405018	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8p23.2	MYOM2	rs17405018-?	NR	7E-7	(SM 22:0)	0.28157654	[0.17-0.39] unit increase	Affymetrix [at least 2500000] (imputed)	N
615	chr8	4014108	4014109	rs74442193	29532581	Hallfors J	2018-03-13	Addict Biol	Genome-wide association study in Finnish twins highlights the connection between nicotine addiction and neurotrophin signaling pathway.	Nicotine dependence symptom count	1,715 Finnish ancestry ever smoker individuals from 739 families	NA	8p23.2	NR	rs74442193-G	0.037	9E-6		0.7	[0.39-1.01] unit increase	Illumina [9469131] (imputed)	N
615	chr8	4014578	4014579	rs7821609	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	8p23.2	CSMD1	rs7821609-?		5E-6	(recessive)	0.191	[0.11-0.27] unit increase	Illumina [1492601] (imputed)	N
615	chr8	4025643	4025644	rs4395908	24709693	Cobb J	2014-04-08	Pharmacogenomics J	Genome-wide data reveal novel genes for methotrexate response in a large cohort of juvenile idiopathic arthritis cases.	Response to methotrexate in juvenile idiopathic arthritis	694 European ancestry child cases	NA	8p23.2	CSMD1	rs4395908-C	NR	1E-6	(CHAQ)	0.27	[0.17-0.37] unit decrease	Illumina [586062]	N
615	chr8	4045834	4045835	rs6996352	30718321	Sanchez-Roige S	2019-02-04	J Neurosci	Genome-wide association studies of impulsive personality traits (BIS-11 and UPPSP) and drug experimentation in up to 22,861 adult research participants identify loci in the CACNA1I and CADM2 genes.	Negative urgency	22,795 European ancestry individuals	NA	8p23.2	CSMD1	rs6996352-T	0.1245	1E-6		0.066	[0.039-0.093] unit increase	Illumina [11434023] (imputed)	N
615	chr8	4061613	4061614	rs55841617	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Gamma glutamyl transferase levels in low alcohol consumption	8,716 individuals	NA	8p23.2	NR	rs55841617-?	NR	4E-6		0.0378	[0.022-0.054] unit decrease	Illumina [~ 7800000] (imputed)	N
616	chr8	4068712	4068713	rs1700072	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8p23.2	MYOM2	rs1700072-?	NR	3E-6	(NG monomethyl arginine)	0.25580314	[0.15-0.36] unit increase	Affymetrix [at least 2500000] (imputed)	N
616	chr8	4071513	4071514	rs890001	33841421	Li J	2021-03-25	Front Immunol	Variants at the MHC Region Associate With Susceptibility to <i>Clostridioides difficile</i> Infection: A Genome-Wide Association Study Using Comprehensive Electronic Health Records.	Clostridioides difficle infection	1,160 European ancestry cases, 14,144 European ancestry controls	NA	8p23.2	CSMD1	rs890001-C	0.0206	3E-6		1.77	[1.44-2.12]	Illumina [64973696] (imputed)	N
616	chr8	4078352	4078353	rs2407314	21901158	Irvin MR	2011-08-25	PLoS One	Genome-wide detection of allele specific copy number variation associated with insulin resistance in African Americans from the HyperGEN study.	Insulin resistance/response	1,040 African American individuals	NA	8p23.2	CSMD1	rs2407314-C	0.47	8E-6	(HOMA-IR)	9.0	[5.00 - 12.00] % decrease	Affymetrix [872243]	N
616	chr8	4087034	4087035	rs150432060	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental longevity (mother's age at death)	52,776 middle-aged British individuals	NA	8p23.2	NR	rs150432060-?	NR	3E-6		0.12172	[0.071-0.173] unit decrease	Affymetrix [9658292] (imputed)	N
616	chr8	4089421	4089422	rs1700048	31763980	Xiong Z	2019-11-25	Elife	Novel genetic loci affecting facial shape variation in humans.	Facial morphology	10,115 European ancestry individuals	NA	8p23.2	CSMD1	rs1700048-C	0.03	4E-8	(right exocanthion-left cheilion distance)	0.215	NR unit decrease	Illumina [7029494] (imputed)	N
616	chr8	4102423	4102424	rs145669495	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	Resting heart rate	19,920 British ancestry individuals from 6863 families.	NA	8p23.2	CSMD1	rs145669495-G	0.00215528	2E-8		7.664554	[4.99-10.34] beats per minute increase	Illumina [24111857] (imputed)	N
616	chr8	4105146	4105147	rs1714746	23648065	Low SK	2013-05-04	Cancer Sci	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (carboplatin)	261 Japanese ancestry cases, 262 Japanese ancestry controls	NA	8p23.2	CSMD1	rs1714746-G	0.435	7E-6	(Recessive model)	1.61	[1.261-2.056]	Illumina [733202]	N
616	chr8	4107346	4107347	rs2656279	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Hepatitis B	1,425 European ancestry cases, 218,180 European ancestry controls	NA	8p23.2	NR	rs2656279-?	NR	1E-6		2.2216	[1.52-2.93] unit increase	Illumina [at least 560000] (imputed)	N
616	chr8	4110031	4110032	rs13259289	23942779	McGue M	2013-08-14	Behav Genet	A genome-wide association study of behavioral disinhibition.	Illicit drug use	7,188 European ancestry individuals	NA	8p23.2	CSMD1	rs13259289-G	0.399	6E-6		8.675	[NR] unit decrease	Illumina [527829]	N
616	chr8	4117537	4117538	rs2656285	34075027	Gonda X	2021-06-01	Transl Psychiatry	Genetic underpinnings of affective temperaments: a pilot GWAS investigation identifies a new genome-wide significant SNP for anxious temperament in ADGRB3 gene.	Cyclothymic temperament	775 European ancestry individuals	NA	8p23.2		rs2656285-A	NR	8E-6		0.03344	unit decrease	Illumina [2550710] (imputed)	N
616	chr8	4118379	4118380	rs12677331	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip	15 Asian ancestry cases, 13 European ancestry cases, 15 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	8p23.2	NR	rs12677331-?	NR	1E-7		4.45	[3.5-5.65]	Illumina [539000] (imputed)	N
616	chr8	4126700	4126701	rs7838666	32902719	Hebbar P	2020-09-09	Hum Genet	Genome-wide landscape establishes novel association signals for metabolic traits in the Arab population.	Fasting plasma glucose	2,732 Kuwaiti ancestry individuals	NA	8p23.2	intergenic	rs7838666-?	NR	7E-10		6.159	NR unit increase	Illumina [up to 1520000] (imputed)	N
616	chr8	4128310	4128311	rs78686130	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	8p23.2	NR	rs78686130-?	NR	5E-9				Affymetrix [~ 8270000] (imputed)	N
616	chr8	4128310	4128311	rs78686130	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	8p23.2		rs78686130-?	NR	7E-9				NR [~ 8900000] (imputed)	N
616	chr8	4130362	4130363	rs10503246	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	8p23.2	CSMD1	rs10503246-A	0.708124	5E-10		0.00965863	[0.0066-0.0127] unit decrease	Affymetrix [12370749]	N
616	chr8	4130967	4130968	rs809649	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	8p23.2	NR	rs809649-?	NR	3E-6				Affymetrix [NR]	N
616	chr8	4164012	4164013	rs4875320	21347282	Lettre G	2011-02-10	PLoS Genet	Genome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project.	HDL cholesterol	7,813 African American individuals	4,323 African American and Afro-Caribbean individuals	8p23.2	CSMD1	rs4875320-A	0.82	6E-6		0.0999	[0.057-0.143] unit decrease	Affymetrix [~ 2740000] (imputed)	N
616	chr8	4180611	4180611	rs139425113	29483656	Pardinas AF	2018-02-26	Nat Genet	Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.	Schizophrenia	40,675 European ancestry cases, 64,643 European ancestry controls	1,651 European ancestry cases, 4,111 cases, 142,717 European ancestry controls, 11,507 controls	8p23.2	CSMD1	rs139425113-?	NR	8E-9		1.0683761	[1.05-1.09]	Illumina [8000000] (imputed)	N
616	chr8	4180843	4180844	rs10503253	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	8p23.2	NR	rs10503253-A	NR	1E-8		1.07	[NR]	Illumina [7158791] (imputed)	N
616	chr8	4180843	4180844	rs10503253	25056061	Ripke S	2014-07-22	Nature	Biological insights from 108 schizophrenia-associated genetic loci.	Schizophrenia	32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	1,513 European ancestry cases, 66,236 European ancestry controls	8p23.2	CSMD1	rs10503253-A	0.219	1E-8		1.073	[1.048-1.100]	Affymetrix, Illumina [9005918] (imputed)	N
616	chr8	4180843	4180844	rs10503253	23453885	Smoller JW	2013-02-27	Lancet	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NA	8p23.2	CSMD1	rs10503253-?	0.193	4E-8	(Modelling analysis)			NR [1252901] (imputed)	N
616	chr8	4180843	4180844	rs10503253	21926974	Ripke S	2011-09-18	Nat Genet	Genome-wide association study identifies five new schizophrenia loci.	Schizophrenia	9,394 European ancestry cases, 12,462 European ancestry controls	8,442 European ancestry cases, 21,397 European ancestry controls	8p23.2	CSMD1	rs10503253-A	0.19	2E-8		1.16	[1.11-1.21]	Affymetrix, Illumina [1252901] (imputed)	N
616	chr8	4181064	4181065	rs12546471	27485664	Bonfiglio F	2016-08-03	Neurogastroenterol Motil	A meta-analysis of reflux genome-wide association studies in 6750 Northern Europeans from the general population.	Gastroesophageal reflux disease	2,247 European ancestry cases, 4,503 European ancestry controls	NA	8p23.2	CSMD1	rs12546471-C	0.61	4E-6				Illumina [2327020] (imputed)	N
616	chr8	4183056	4183057	rs13261217	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	8p23.2	NR	rs13261217-?	NR	1E-9		1.0621574	[1.04-1.08]	Affymetrix, Illumina [12447948] (imputed)	N
616	chr8	4183056	4183057	rs13261217	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	8p23.2	CSMD1	rs13261217-G	NR	4E-9		1.0706638	[1.05-1.09]	Illumina [6627481] (imputed)	N
616	chr8	4183056	4183057	rs13261217	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	8p23.2	CSMD1	rs13261217-G	NR	1E-7	(EA)	1.0729614	[1.05-1.1]	Illumina [6627481] (imputed)	N
616	chr8	4183056	4183057	rs13261217	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	8p23.2	CSMD1	rs13261217-G	NR	2E-9		1.0706638	[1.05-1.09]	Affymetrix, Illumina [up to 5107227] (imputed)	N
616	chr8	4184169	4184170	rs10046758	31268507	Periyasamy S	2019-07-03	JAMA Psychiatry	Association of Schizophrenia Risk With Disordered Niacin Metabolism in an Indian Genome-wide Association Study.	Schizophrenia	816 Indian ancestry cases, 900 Indian ancestry controls, 505 Indian ancestry cases and 871 Indian ancestry controls from 405 families, up to 36,989 European and unknown ancestry cases, up to 113,075 European and unknown ancestry controls	NA	8p23.2	NR	rs10046758-?	NR	9E-8				Illumina [up to 5582932] (imputed)	N
616	chr8	4185552	4185553	rs2134953	27958378	Floyd JS	2016-12-13	Pharmacogenomics J	Large-scale pharmacogenomic study of sulfonylureas and the QT, JT and QRS intervals: CHARGE Pharmacogenomics Working Group.	QRS interval (sulfonylurea treatment interaction)	2,095 European ancestry exposed individuals, 42,907 European ancestry unexposed individuals, 1,167 African American exposed individuals, 10,564 African American unexposed individuals, 794 Hispanic/Latino American exposed individuals, 14,330 Hispanic/Latino American unexposed individuals	NA	8p23.2	CSMD1	rs2134953-?	NR	8E-8		7.8	[5.06-10.54] ms decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
616	chr8	4186730	4186731	rs117173251	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	8p23.2	NR	rs117173251-C	0.9673	2E-8		0.077	[0.05-0.104] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
616	chr8	4191445	4191446	rs10108980	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	8p23.2	CSMD1	rs10108980-?		4E-10				NR [6786993] (imputed)	N
617	chr8	4214178	4214179	rs10503256	22688191	Bergen SE	2012-06-12	Mol Psychiatry	Genome-wide association study in a Swedish population yields support for greater CNV and MHC involvement in schizophrenia compared with bipolar disorder.	Schizophrenia	2,111 European ancestry cases, 2,535 European ancestry controls	11,271 European ancestry cases, 14,601 European ancestry controls	8p23.2	CSMD1	rs10503256-?	NR	9E-7		1.1	[NR]	Affymetrix [745006]	N
617	chr8	4226396	4226397	rs1583652	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8p23.2	MCPH1	rs1583652-?	NR	9E-6	(TAG 52:3)	0.3081325	[0.17-0.44] unit decrease	Affymetrix [at least 2500000] (imputed)	N
617	chr8	4238138	4238139	rs6558872	24166486	Sleiman P	2013-10-29	Sci Rep	GWAS meta analysis identifies TSNARE1 as a novel Schizophrenia / Bipolar susceptibility locus.	Schizophrenia, schizoaffective disorder or bipolar disorder	11,985 European, African American, Asian, other and unknown ancestry schizophrenia cases, 377 European, African American, Asian, other and unknown ancestry schizoaffective disorder cases, 1,032 bipolar disorder cases, 34,676 European, African American, Asian, other and unknown ancestry controls	2652 individuals	8p23.2	CSMD1	rs6558872-?	0.571	5E-8				Affymetrix, Illumina [NR] (imputed)	N
617	chr8	4251283	4251284	rs11988906	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	8p23.2	CSMD1, Metazoa_SRP	rs11988906-G	NR	2E-6	(resting duration)	0.1925	[0.11-0.27] unit increase	Affymetrix [7141204] (imputed)	N
617	chr8	4282617	4282618	rs980238	22993228	Williams FM	2012-09-19	Ann Rheum Dis	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NA	8p23.2	intergenic	rs980238-A	0.30	9E-6		0.1	[0.055-0.145] unit decrease	Affymetrix, Illumina [2552511] (imputed)	N
617	chr8	4284691	4284692	rs4875102	22993228	Williams FM	2012-09-19	Ann Rheum Dis	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NA	8p23.2	intergenic	rs4875102-A	0.26	4E-7		0.12	[0.073-0.167] unit decrease	Affymetrix, Illumina [2552511] (imputed)	N
617	chr8	4285389	4285390	rs1154053	22993228	Williams FM	2012-09-19	Ann Rheum Dis	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NA	8p23.2	intergenic	rs1154053-C	0.17	4E-6		0.13	[0.075-0.185] unit decrease	Affymetrix, Illumina [2552511] (imputed)	N
617	chr8	4288576	4288577	rs1658820	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	8p23.2	NR	rs1658820-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
617	chr8	4288576	4288577	rs1658820	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	8p23.2		rs1658820-?	NR	6E-11				NR [~ 8900000] (imputed)	N
617	chr8	4288576	4288577	rs1658820	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	8p23.2	NA	rs1658820-T	0.2389	4E-11		0.0132	[0.0093-0.0171] unit increase	NR [~ 27400000] (imputed)	N
617	chr8	4296511	4296512	rs13273325	31250787	Fawns-Ritchie C	2019-06-01	Twin Res Hum Genet	Genetic Contributions to Health Literacy.	Health literacy	1,771 English ancestry cases, 4,012 English ancestry controls	NA	8p23.2	CSMD1	rs13273325-T	NR	6E-6		0.02711	[0.015-0.039] unit increase	Illumina [NR] (imputed)	N
617	chr8	4299882	4299883	rs17070309	22542470	Ovsyannikova IG	2012-04-25	Vaccine	Genome-wide association study of antibody response to smallpox vaccine.	Immune response to smallpox vaccine (IL-6)	217 African American individuals, 580 European ancestry individuals, 217 Hispanic individuals	NA	8p23.2	CSMD1	rs17070309-?		5E-7	(AA)			Illumina [NR]	N
617	chr8	4300553	4300554	rs77976727	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	8p23.2	CSMD1	rs77976727-C	0.906093	4E-10		0.0151036	[0.01-0.02] unit decrease	Affymetrix [12370749]	N
618	chr8	4403585	4403586	rs1983474	25057126	Ramos YF	2014-07-23	J Med Genet	Meta-analysis identifies loci affecting levels of the potential osteoarthritis biomarkers sCOMP and uCTX-II with genome wide significance.	Osteoarthritis biomarkers	up to 4,654 European ancestry individuals	964 European ancestry individuals	8p23.2	CSMD1	rs1983474-C	0.77	8E-8	(uCTX-II)	0.13	[NR] unit increase	Illumina [up to 1961964] (imputed)	N
618	chr8	4412354	4412355	rs7357519	33585033	Hayashi S	2021-01-29	Biomed Rep	A genome-wide association study identifying the SNPs predictive of rapid joint destruction in patients with rheumatoid arthritis.	joint destruction in rheumatoid arthritis (rapid vs slow)	30 Japanese ancestry rapid joint destruction individuals, 198 Japanese ancestry slow joint destruction individuals	NA	8p23.2	CSMD1	rs7357519-?	NR	7E-6			NR	Illumina [up to 317503]	N
618	chr8	4420187	4420188	rs2950160	26121980	Chauhan L	2015-06-30	BMC Genomics	Genome-wide association analysis identified splicing single nucleotide polymorphism in CFLAR predictive of triptolide chemo-sensitivity.	Triptolide cytotoxicity	55 European ancestry lymphoblastoid cell lines	NA	8p23.2	CSMD1	rs2950160-?	NR	6E-6		0.57	unit decrease	Affymetrix, Illumina, Perlegen [at least 1978803] (imputed)	N
618	chr8	4434051	4434052	rs4875362	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8p23.2	MCPH1	rs4875362-?	NR	6E-6	(glycodeoxycholate)	0.5536415	[0.31-0.79] unit increase	Affymetrix [at least 2500000] (imputed)	N
618	chr8	4437464	4437465	rs10097669	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	8p23.2	NR	rs10097669-T	0.6734	5E-6	(Total trans-18:1, EA)	0.0461	[0.026-0.066] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
618	chr8	4441779	4441780	rs11987640	28836065	Hellwege JN	2017-08-23	Hum Genet	A multi-stage genome-wide association study of uterine fibroids in African Americans.	Uterine fibroids	3,999 African American cases, 4,764 African American controls	NA	8p23.2	CSMD1	rs11987640-G	0.8	5E-7		1.2345679	[1.12-1.37]	Affymetrix, Illumina [17963051] (imputed)	N
618	chr8	4445198	4445199	rs2724992	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8p23.2	MCPH1	rs2724992-?	NR	3E-6	(lactose)	0.18322964	[0.11-0.26] unit increase	Affymetrix [at least 2500000] (imputed)	N
619	chr8	4462640	4462641	rs13261356	34062886	Nazarian A	2021-05-01	Genes (Basel)	Genome-Wide Analysis of Sex Disparities in the Genetic Architecture of Lung and Colorectal Cancers.	Lung cancer	237 European ancestry female cases, 220 European ancestry male cases, 8,354 European ancestry female controls, 6,278 European ancestry male controls	NA	8p23.2	CSMD1	rs13261356-C	0.9	3E-6	(Male)	0.482	[0.35-0.61]	NR [up to 1668434] (imputed)	N
619	chr8	4466041	4466042	rs2725043	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8p23.2	MCPH1	rs2725043-?	NR	5E-7	(TAG 52:1)	0.18183258	[0.11-0.25] unit decrease	Affymetrix [at least 2500000] (imputed)	N
619	chr8	4466352	4466353	rs2061750	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8p23.2	MCPH1	rs2061750-?	NR	7E-7	(TAG 46:1)	0.18033159	[0.11-0.25] unit decrease	Affymetrix [at least 2500000] (imputed)	N
619	chr8	4466352	4466353	rs2061750	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8p23.2	MCPH1	rs2061750-?	NR	2E-7	(TAG 48:1)	0.18863134	[0.12-0.26] unit decrease	Affymetrix [at least 2500000] (imputed)	N
619	chr8	4466352	4466353	rs2061750	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8p23.2	MCPH1	rs2061750-?	NR	1E-6	(TAG 48:0)	0.17807943	[0.11-0.25] unit decrease	Affymetrix [at least 2500000] (imputed)	N
619	chr8	4466352	4466353	rs2061750	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8p23.2	MCPH1	rs2061750-?	NR	1E-6	(TAG 44:1)	0.17535198	[0.1-0.25] unit decrease	Affymetrix [at least 2500000] (imputed)	N
619	chr8	4466979	4466980	rs2466731	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8p23.2	MCPH1	rs2466731-?	NR	4E-6	(TAG 52:2)	0.16816704	[0.097-0.239] unit decrease	Affymetrix [at least 2500000] (imputed)	N
619	chr8	4466979	4466980	rs2466731	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8p23.2	MCPH1	rs2466731-?	NR	1E-6	(TAG 48:3)	0.17719784	[0.11-0.25] unit decrease	Affymetrix [at least 2500000] (imputed)	N
619	chr8	4467103	4467104	rs2725044	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8p23.2	MCPH1	rs2725044-?	NR	2E-7	(TAG 46:2)	0.19012858	[0.12-0.26] unit decrease	Affymetrix [at least 2500000] (imputed)	N
619	chr8	4477313	4477314	rs1478275	34437536	Akhtari FS	2021-08-26	PLoS Genet	High-throughput screening and genome-wide analyses of 44 anticancer drugs in the 1000 Genomes cell lines reveals an association of the NQO1 gene with the response of multiple anticancer drugs.	Response to vinorelbine	680 lymphoblastoid cell lines from Han Chinese ancestry, Japanese ancestry, Kenyan ancestry, Mexican ancestry, Tuscan ancestry, Yoruban ancestry, British ancestry, Columbian ancestry individuals	NA	8p23.2		rs1478275-?	NR	9E-7				Illumina [1510701]	N
619	chr8	4478343	4478344	rs2616978	25456346	Nievergelt CM	2014-10-30	Psychoneuroendocrinology	Genomic predictors of combat stress vulnerability and resilience in U.S. Marines: A genome-wide association study across multiple ancestries implicates PRTFDC1 as a potential PTSD gene.	Post-traumatic stress disorder	940 European, Hispanic, Native American, African American, East Asian and other ancestry cases, 2,554 European, Hispanic, Native American, African American, East Asian and other ancestry trauma-exposed controls	313 European ancestry cases, 178 European ancestry trauma-exposed controls	8p23.2	CSMD1	rs2616978-T	0.607	3E-6	(Hispanic)	2.004	[1.71-2.29]	Illumina [21693469] (imputed)	N
619	chr8	4478343	4478344	rs2616978	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8p23.2	MCPH1	rs2616978-?	NR	6E-6	(DAG 36:1)	0.16079949	[0.091-0.231] unit decrease	Affymetrix [at least 2500000] (imputed)	N
619	chr8	4478343	4478344	rs2616978	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8p23.2	MCPH1	rs2616978-?	NR	2E-6	(CE 22:6)	0.16882353	[0.099-0.239] unit increase	Affymetrix [at least 2500000] (imputed)	N
619	chr8	4478438	4478439	rs2616979	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8p23.2	MCPH1	rs2616979-?	NR	1E-6	(PC 32:1)	0.1878513	[0.11-0.26] unit decrease	Affymetrix [at least 2500000] (imputed)	N
619	chr8	4479595	4479596	rs12334700	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8p23.2	MCPH1	rs12334700-?	NR	7E-6	(TAG 50:3)	0.16159646	[0.091-0.232] unit decrease	Affymetrix [at least 2500000] (imputed)	N
619	chr8	4479595	4479596	rs12334700	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8p23.2	MCPH1	rs12334700-?	NR	2E-7	(TAG 48:2)	0.18586591	[0.12-0.26] unit decrease	Affymetrix [at least 2500000] (imputed)	N
619	chr8	4479595	4479596	rs12334700	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8p23.2	MCPH1	rs12334700-?	NR	1E-6	(TAG 50:2)	0.17378998	[0.1-0.24] unit decrease	Affymetrix [at least 2500000] (imputed)	N
619	chr8	4483140	4483141	rs2616984	20125193	Cirulli ET	2010-02-03	Eur J Hum Genet	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American individuals, up to 74 South Asian ancestry individuals	NA	8p23.2	intergenic	rs2616984-?	NR	4E-6	(Digit Span Backward)			Illumina [up to 563855]	N
619	chr8	4504530	4504531	rs11984453	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (positive Marder score)	1,390 European ancestry cases	NA	8p23.2		rs11984453-G	NR	7E-6	(GLM)	1.8088	[NR] unit increase	Illumina [~ 9000000] (imputed)	N
619	chr8	4550989	4550990	rs12550650	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	8p23.2		rs12550650-?	NR	5E-20				NR [~ 8900000] (imputed)	N
619	chr8	4560080	4560081	rs7828501	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	8p23.2	CSMD1	rs7828501-G	0.45	1E-13		0.04	[0.03-0.05] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
620	chr8	4617809	4617810	rs1379326	23583980	Fingerlin TE	2013-04-14	Nat Genet	Genome-wide association study identifies multiple susceptibility loci for pulmonary fibrosis.	Interstitial lung disease	1,161 European ancestry cases, 4,683 European ancestry controls	876 European ancestry cases, 1,890 European ancestry controls	8p23.2	NR	rs1379326-C	0.26	1E-7		1.78	[1.45-2.19]	Illumina [439828]	N
620	chr8	4644788	4644789	rs11136774	30294719	Zeng Y	2018-08-24	JAMA Netw Open	Sex Differences in Genetic Associations With Longevity.	Longevity	564 Han Chinese ancestry male centenarian cases, 1,614 Han Chinese ancestry female centenarian cases, 773 Han Chinese ancestry male middle-aged controls, 1,526 Han Chinese ancestry female middle-aged controls	NA	8p23.2	CSMD1	rs11136774-?	0.3	3E-6	(male)	1.56	[1.30-1.88]	Illumina [5595657] (imputed)	N
620	chr8	4648715	4648716	rs11136775	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	8p23.2	NR	rs11136775-?	NR	2E-34				Affymetrix [NR]	N
621	chr8	4747735	4747736	rs2028234	34177598	Wolking S	2021-06-09	Front Pharmacol	Role of Common Genetic Variants for Drug-Resistance to Specific Anti-Seizure Medications.	Response to lamotrigine in focal epilepsy	334 European ancestry cases, 680 European ancestry controls	NA			rs2028234-?	NR	7E-7				Illumina [NR] (imputed)	N
621	chr8	4754837	4754838	rs73505850	29381699	Ravenhall M	2018-01-30	PLoS Genet	Novel genetic polymorphisms associated with severe malaria and under selective pressure in North-eastern Tanzania.	Severe malaria (adjusted for sickle cell variant rs334)	449 Tanzanian ancestry cases, 465 Tanzanian ancestry controls	NA	8p23.2	CSMD1	rs73505850-?	NR	1E-6	(Additive)		[NR]	Illumina [15200000] (imputed)	N
621	chr8	4754837	4754838	rs73505850	29381699	Ravenhall M	2018-01-30	PLoS Genet	Novel genetic polymorphisms associated with severe malaria and under selective pressure in North-eastern Tanzania.	Severe malaria	449 Tanzanian ancestry cases, 465 Tanzanian ancestry controls	NA	8p23.2	CSMD1	rs73505850-?	NR	8E-7	(Additive)	4.795	[NR]	Illumina [15200000] (imputed)	N
621	chr8	4764106	4764108	rs796188657	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8p23.2	NR	rs796188657-C	0.0122	6E-9	(DCN)	0.07033	NR unit increase	Illumina [1671387] (imputed)	N
621	chr8	4781873	4781874	rs4633074	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	8p23.2		rs4633074-?	NR	5E-13				NR [~ 8900000] (imputed)	N
621	chr8	4793663	4793664	rs67121641	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	8p23.2	Intergenic	rs67121641-C	0.6719	3E-10	(MTAG)	0.0111	[0.0076-0.0146] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
621	chr8	4796093	4796094	rs73191311	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	8p23.2		rs73191311-A	0.3363	2E-10		0.0094	[0.0065-0.0123] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
621	chr8	4796093	4796094	rs73191311	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	8p23.2	Intergenic	rs73191311-A	0.3363	3E-12	(MTAG)	0.0097	[0.007-0.0124] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
621	chr8	4801133	4801134	rs11993084	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter alcoholic beverage consumption	336,448 European ancestry individuals	39,924 European ancestry individuals	8p23.2	CSMD1	rs11993084-C	0.7727	2E-6		0.0058	[0.0034-0.0082] unit increase	Affymetrix [~ 7740000] (imputed)	N
621	chr8	4816362	4816363	rs6982358	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	8p23.2		rs6982358-T	NR	4E-9		0.0097	[0.0066-0.0128] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
621	chr8	4816871	4816872	rs6986895	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	8p23.2	NR	rs6986895-?	NR	6E-10		1.0590752	[1.04-1.08]	Affymetrix, Illumina [12447948] (imputed)	N
621	chr8	4817591	4817592	rs12541020	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	8p23.2	CSMD1	rs12541020-T	NR	6E-9		1.061	[1.04-1.08]	Illumina [6627481] (imputed)	N
621	chr8	4817591	4817592	rs12541020	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	8p23.2	intergenic	rs12541020-T	NR	4E-7		1.052	[1.03-1.07]	Affymetrix, Illumina [up to 5107227] (imputed)	N
621	chr8	4821848	4821849	rs4317600	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	8p23.2	NR	rs4317600-?	NR	9E-8		0.0093042	[0.0059-0.0127] unit increase	Affymetrix [805426] (imputed)	N
621	chr8	4823607	4823608	rs35524253	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	8p23.2	CSMD1	rs35524253-A	0.3539	3E-18		1.0339		Affymetrix [11880941] (imputed)	N
621	chr8	4823607	4823608	rs35524253	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	8p23.2	CSMD1	rs35524253-A	0.3539	3E-18		1.0347916		Affymetrix [11880941] (imputed)	N
621	chr8	4823607	4823608	rs35524253	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	8p23.2		rs35524253-?	NR	9E-9				NR [~ 8900000] (imputed)	N
621	chr8	4825442	4825443	rs35748596	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	8p23.2		rs35748596-T	0.6423	2E-12		0.016	[0.012-0.02] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
621	chr8	4829192	4829193	rs4266671	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	8p23.2		rs4266671-?	NR	4E-18				NR [~ 8900000] (imputed)	N
621	chr8	4833040	4833041	rs7016302	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	8p23.2		rs7016302-C	0.8308	2E-11		0.0125	[0.0088-0.0162] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
621	chr8	4833789	4833790	rs7463166	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	8p23.2	CSMD1	rs7463166-A	0.63	1E-8		0.03	[0.02-0.04] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
621	chr8	4841023	4841024	rs17349258	27171184	Kuo HC	2016-05-12	PLoS One	Genome-Wide Association Study Identifies Novel Susceptibility Genes Associated with Coronary Artery Aneurysm Formation in Kawasaki Disease.	Coronary artery aneurysm in Kawasaki disease	11 Taiwanese ancestry cases, 146 Taiwanese ancestry controls	NA	8p23.2	CSMD1	rs17349258-?	0.006849	3E-6		22.89	[NR]	Affymetrix [559609]	N
621	chr8	4848656	4848657	rs13249975	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Raw vegetable consumption	335,576 European ancestry individuals	NA	8p23.2	CSMD1	rs13249975-?	NR	6E-10		0.0158299	[0.011-0.021] unit increase	Affymetrix [25921788] (imputed)	N
622	chr8	4859202	4859203	rs35051650	33381925	Buchanan VL	2020-12-30	Pediatr Obes	Genome-wide association study identifying novel variant for fasting insulin and allelic heterogeneity in known glycemic loci in Chilean adolescents: The Santiago Longitudinal Study.	Homeostasis model assessment of insulin resistance	543 Chilean individuals	NA	8p23.2	CSMD1	rs35051650-A	0.13	9E-7		0.269	[0.16-0.38] unit increase	Illumina [NR] (imputed)	N
622	chr8	4860490	4860491	rs12547604	26835600	Hu Y	2016-02-02	Nat Commun	GWAS of 89,283 individuals identifies genetic variants associated with self-reporting of being a morning person.	Morning vs. evening chronotype	38,937 European ancestry morning chronotype individuals, 50,346 European ancestry evening chronotype individuals	NA	8p23.2	NR	rs12547604-?	NR	3E-7				Illumina [7427422] (imputed)	N
622	chr8	4875171	4875172	rs10112481	24025145	Chung S	2013-09-11	Breast Cancer Res	A genome-wide association study of chemotherapy-induced alopecia in breast cancer patients.	Adverse response to chemotherapy in breast cancer (alopecia) (cyclophosphamide+doxorubicin+/-5FU)	64 Japanese ancestry cases, 27 Japanese ancestry controls	NA	8p23.2	LOC100129861	rs10112481-A	0.22	4E-6	(Allelic)	5.12	[2.46-10.6]	Illumina [555600]	N
622	chr8	4925431	4925432	rs13265017	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	8p23.2	NR	rs13265017-A	NR	4E-8		5.493	z score increase	Affymetrix [10847151] (imputed)	N
622	chr8	4926464	4926465	rs1454292	19896111	Medland SE	2009-11-04	Am J Hum Genet	Common variants in the trichohyalin gene are associated with straight hair in Europeans.	Hair morphology	4,845 European ancestry individuals from 2,892 families, 16,140 European ancestry individuals	NA	8p23.2	AC019176.2	rs1454292-T	NR	8E-6				Illumina [~ 1000000] (imputed)	N
622	chr8	4927227	4927228	rs1377889	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	8p23.2	NR	rs1377889-?	NR	5E-14				Affymetrix [NR]	N
622	chr8	4937756	4937757	rs2407746	31972866	Nagel M	2020-01-23	Acta Psychiatr Scand	Genome-wide association study of the sensitivity to environmental stress and adversity (SESA) neuroticism cluster.	Sensitivity to environmental stress and adversity	351,827 European ancestry individuals	NA	8p23.2	NR	rs2407746-G	NR	3E-10		0.016	NR unit increase	NR [7259579]	N
622	chr8	4937756	4937757	rs2407746	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	8p23.2		rs2407746-?	NR	1E-10				NR [~ 8900000] (imputed)	N
622	chr8	4937756	4937757	rs2407746	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	8p23.2	NR	rs2407746-G	NR	1E-10		0.01678	[0.012-0.022] unit increase	Affymetrix [10847151] (imputed)	N
622	chr8	4937756	4937757	rs2407746	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	8p23.2	NR	rs2407746-C	NR	2E-12		7.014	z score decrease	Affymetrix [10847151] (imputed)	N
622	chr8	4937756	4937757	rs2407746	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	8p23.2	NR	rs2407746-C	0.301794	4E-12		6.95	z score decrease	NR [10847151] (imputed)	N
622	chr8	4937756	4937757	rs2407746	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling nervous	373,121 European ancestry individuals	NA	8p23.2	NR	rs2407746-C	0.301794	3E-9		5.93	z score decrease	NR [10847151] (imputed)	N
622	chr8	4937756	4937757	rs2407746	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	8p23.2	intergenic	rs2407746-C	0.69821	3E-9		5.909	z score decrease	Illumina [18485882] (imputed)	N
622	chr8	4946227	4946228	rs7845515	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Neuroticism	274,107 British ancestry individuals	NA	8p23.2	NR	rs7845515-A	0.2875	7E-11		0.01267	[0.0089-0.0165] unit increase	NR [8968716] (imputed)	N
622	chr8	4948513	4948514	rs2897754	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	8p23.2	NR	rs2897754-A	NR	9E-9		5.747	z score increase	Affymetrix [10847151] (imputed)	N
622	chr8	4976912	4976913	rs11785693	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on self-rated math ability (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	8p23.2		rs11785693-?	NR	2E-9				NR [NR]	N
622	chr8	4976912	4976913	rs11785693	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on highest math class (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	8p23.2		rs11785693-?	NR	2E-9				NR [NR]	N
622	chr8	4976912	4976913	rs11785693	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on cognitive performance (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	8p23.2		rs11785693-?	NR	2E-9				NR [NR]	N
622	chr8	4976912	4976913	rs11785693	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on average household income before tax (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	8p23.2		rs11785693-?	NR	1E-8				NR [NR]	N
622	chr8	4976912	4976913	rs11785693	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on Townsend deprivation index (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	8p23.2		rs11785693-?	NR	2E-9				NR [NR]	N
622	chr8	4976912	4976913	rs11785693	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Neuroticism (MTAG)	168,105 European ancestry individuals	NA	8p23.2	NR	rs11785693-T	0.2074	5E-8		0.0187	[0.012-0.025] unit decrease	Illumina [NR] (imputed)	N
622	chr8	4976912	4976913	rs11785693	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Neuroticism	170,911 European ancestry individuals	NA	8p23.2	NR	rs11785693-A	0.785	9E-6		0.018511508	[0.01-0.027] unit increase	Affymetrix [up to 6544775] (imputed)	N
622	chr8	4976941	4976942	rs11782170	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on educational attainment (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	8p23.2		rs11782170-?	NR	6E-10				NR [NR]	N
623	chr8	5071411	5071412	rs7816936	23472165	Albertsen HM	2013-03-05	PLoS One	Genome-wide association study link novel loci to endometriosis.	Endometriosis	1,514 European ancestry cases, 12,660 European ancestry controls	505 European ancestry cases, 1,811 European ancestry controls	8p23.2	LOC100287015, CSMD1	rs7816936-A	0.446	6E-6		1.1628	[NR]	Illumina [580699]	N
623	chr8	5092969	5092970	rs13275667	31791832	Koks S	2019-11-12	J Arthroplasty	The Genetic Variations Associated With Time to Aseptic Loosening After Total Joint Arthroplasty.	Time to aseptic loosening in total joint arthroplasty	97 individuals	NA	8p23.2	intergenic	rs13275667-G	NR	9E-6		3.07	[NR] years decrease	Illumina [up to 600000]	N
623	chr8	5096307	5096308	rs7814405	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Major depressive disorder x sex interaction	15,970 European ancestry cases, 24,984 European ancestry controls	NA	8p23.2	CSMD1, LOC100287015	rs7814405-A	0.2547	8E-6		0.1299	[0.073-0.187] unit increase	NR [NR] (imputed)	N
623	chr8	5096307	5096308	rs7814405	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Major depressive disorder	10,865 European ancestry female cases, 12,753 European ancestry female controls, 5,105 European ancestry male cases, 12,231 European ancestry male controls	NA	8p23.2	CSMD1, LOC100287015	rs7814405-A	0.2547	8E-6	(male)	0.1042	[0.058-0.15] unit decrease	NR [NR] (imputed)	N
624	chr8	5142967	5142968	rs3898179	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8p23.2	MCPH1	rs3898179-?	NR	5E-6	(CE 22:6)	0.5527911	[0.31-0.79] unit increase	Affymetrix [at least 2500000] (imputed)	N
624	chr8	5142967	5142968	rs3898179	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8p23.2	MCPH1	rs3898179-?	NR	5E-6	(CE 20:5)	0.557442	[0.32-0.8] unit increase	Affymetrix [at least 2500000] (imputed)	N
624	chr8	5144782	5144783	rs9314561	27632927	Einarsdottir E	2016-09-16	Sci Rep	Genome-wide association analysis reveals variants on chromosome 19 that contribute to childhood risk of chronic otitis media with effusion.	Otitis media (recurrent)	702 Finnish ancestry child cases, 2,073 Finnish ancestry controls	NA	8p23.2	NR	rs9314561-?	NR	3E-6				Illumina [319683]	N
624	chr8	5162759	5162760	rs10099002	28654678	Mandage R	2017-06-27	PLoS One	Genetic factors affecting EBV copy number in lymphoblastoid cell lines derived from the 1000 Genome Project samples.	Epstein-Barr virus copy number in lymphoblastoid cell lines	389 East Asian ancestry individuals, 189 South Asian ancestry individuals, 492 European ancestry individuals, 467 Sub-Saharan African ancestry individuals, 59 African American individuals, 157 Hispanic/Latino individuals	NA	8p23.2	CSMD1, LOC100287015	rs10099002-?	NR	5E-6	(AA and Sub-Saharan African)			NR [at least 880000]	N
624	chr8	5163955	5163956	rs114790220	30487263	Pollack S	2018-11-28	Diabetes	Multiethnic Genome-wide Association Study of Diabetic Retinopathy using Liability Threshold Modeling of Duration of Diabetes and Glycemic Control.	Diabetic retinopathy (all NPDR and PDR)	1,079 European ancestry cases, 1,970 European ancestry controls, 911 African American cases, 941 African American controls	7,178 East Asian ancestry cases, 6,525 East Asian ancestry controls, 214 South East Asian ancestry cases, 557 South East Asian ancestry controls, 315 South Asian ancestry cases, 669 South Asian ancestry controls, 8,205 European ancestry cases, 7,713 European ancestry controls, 1,470 Hispanic cases, 1,240 Hispanic controls	8p23.2	NR	rs114790220-?	NR	1E-6	(AA, adjusted for duration of diabetes and glycemic control)	2.9411764	[NR]	Affymetrix, Illumina [NR] (imputed)	N
624	chr8	5193295	5193296	rs117146530	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	8p23.2		rs117146530-T	0.0019264	7E-6		0.34333	[0.19-0.49] unit decrease	Affymetrix [15580782] (imputed)	N
624	chr8	5222027	5222028	rs34102224	27622933	Li QS	2016-09-13	Transl Psychiatry	Analysis of 23andMe antidepressant efficacy survey data: implication of circadian rhythm and neuroplasticity in bupropion response.	Response to bupropion in depression	2,675 European ancestry responder cases, 1,861 European ancestry non-responder cases	NA	8p23.2	CSMD1	rs34102224-?		1E-6		1.354	[1.197-1.531]	Illumina [~ 12000000] (imputed)	N
624	chr8	5227101	5227102	rs77265424	23319000	Luykx JJ	2013-01-15	Mol Psychiatry	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (5-HIAA)	up to 398 European ancestry individuals	NA	8p23.2	intergenic	rs77265424-G	NR	4E-6		0.2223	unit increase	Illumina [5767231] (imputed)	N
625	chr8	5247044	5247045	rs78672540	33745150	de Coo A	2021-03-21	J Clin Periodontol	Genome-wide association study of stage III/IV grade C periodontitis (former aggressive periodontitis) in a Spanish population.	Periodontitis (stage III/IV grade C)	465 Spanish ancestry cases, 1,179 Spanish ancestry controls	NA	8p23.2	NR	rs78672540-C	0.04	4E-6		2.32	[1.62-3.31]	Affymetrix [645639] (imputed)	N
625	chr8	5248700	5248701	rs139699890	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (underestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	8p23.2	NR	rs139699890-?	NR	5E-9		5.855	NR z score increase	Illumina [at least 830937] (imputed)	N
625	chr8	5267310	5267311	rs191935895	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	8p23.2	Intergenic	rs191935895-A	0.999	3E-6	(AA)	0.334	unit increase	Illumina [NR] (imputed)	N
625	chr8	5276184	5276185	rs371069475	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	8p23.2	NR	rs371069475-?	NR	2E-6		0.0082027	[0.0048-0.0116] unit decrease	Affymetrix [805426] (imputed)	N
625	chr8	5284295	5284296	rs141088253	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	8p23.2	Intergenic	rs141088253-G	0.999	1E-6	(AA)	0.384	unit increase	Illumina [NR] (imputed)	N
625	chr8	5356002	5356003	rs115911396	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8p23.2	NR	rs115911396-C	0.02265	2E-9	(UGT2B15)	0.3474	NR unit increase	Illumina [1671387] (imputed)	N
625	chr8	5364507	5364508	rs13278097	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium LDL	115,082 European ancestry individuals	NA	8p23.2		rs13278097-C	0.711058	4E-8		0.0251312	[0.016-0.034] unit decrease	NR [11722792] (imputed)	N
625	chr8	5364507	5364508	rs13278097	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in LDL	115,082 European ancestry individuals	NA	8p23.2		rs13278097-C	0.711058	4E-8		0.0248501	[0.016-0.034] unit decrease	NR [11722792] (imputed)	N
625	chr8	5364507	5364508	rs13278097	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium LDL	115,082 European ancestry individuals	NA	8p23.2		rs13278097-C	0.711058	4E-8		0.0251445	[0.016-0.034] unit decrease	NR [11722792] (imputed)	N
625	chr8	5364507	5364508	rs13278097	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in LDL	115,082 European ancestry individuals	NA	8p23.2		rs13278097-C	0.711058	5E-8		0.0247834	[0.016-0.034] unit decrease	NR [11722792] (imputed)	N
625	chr8	5364507	5364508	rs13278097	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	8p23.2		rs13278097-C	0.711058	4E-8		0.0250743	[0.016-0.034] unit decrease	NR [11722792] (imputed)	N
625	chr8	5373539	5373540	rs62494762	23319000	Luykx JJ	2013-01-15	Mol Psychiatry	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA/MHPG ratio)	up to 398 European ancestry individuals	NA	8p23.2	intergenic	rs62494762-C		2E-6		0.3065	unit increase	Illumina [5767231] (imputed)	N
626	chr8	5381864	5381865	rs60741355	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8p23.2	NR	rs60741355-A	0.01742	6E-10	(NPC2)	0.08891	NR unit increase	Illumina [1671387] (imputed)	N
626	chr8	5426218	5426219	rs79386547	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Rubella	12,000 European ancestry cases, 71,597 European ancestry controls	NA	8p23.2	NR	rs79386547-?	NR	3E-6		0.7153	[0.39-1.04] unit increase	Illumina [at least 560000] (imputed)	N
626	chr8	5426530	5426531	rs11777345	23966867	Liu CT	2013-08-15	PLoS Genet	Genome-wide association of body fat distribution in African ancestry populations suggests new loci.	Waist-hip ratio	up to 19,744 African American individuals	Up to 7,606 African American individuals	8p23.2	CSMD1	rs11777345-C	0.9	3E-6	(BMI_men)	0.19	[0.11-0.27] unit increase	Affymetrix, Illumina [3200000] (imputed)	N
626	chr8	5435689	5435690	rs4875590	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure in major depressive disorder	13,393 European ancestry cases, 9,487 European ancestry controls	NA	8p23.2	NR	rs4875590-T	0.483964	1E-6		1.1402508	[1.09-1.19]	Affymetrix [7791636] (imputed)	N
626	chr8	5461752	5461753	rs4875598	18846501	Sonuga-Barke EJ	2008-10-07	Am J Med Genet B Neuropsychiatr Genet	Does parental expressed emotion moderate genetic effects in ADHD? An exploration using a genome wide association scan.	Attention deficit hyperactivity disorder symptoms (maternal expressed emotions interaction)	909 European ancestry trios	NA	8p23.2	intergenic	rs4875598-G	0.34	9E-6	(maternal warmth)	0.94	[NR] unit decrease	Perlegen [429981]	N
626	chr8	5467516	5467517	rs17074260	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8p23.2	MCPH1	rs17074260-?	NR	7E-6	(PC 40:6)	0.46406734	[0.26-0.67] unit decrease	Affymetrix [at least 2500000] (imputed)	N
626	chr8	5498259	5498260	rs2408086	31586183	Niazi Y	2019-10-04	Mutagenesis	Distinct pathways associated with chromosomal aberration frequency in a cohort exposed to genotoxic compounds compared to general population.	High chromosomal aberration frequency (chromatid type)	333 European and unknown ancestry cases, 533 European and unknown ancestry controls	NA	8p23.2	CSMD1	rs2408086-?	NR	8E-6		1.5625	[1.28-1.89]	Illumina [> 2600000] (imputed)	N
626	chr8	5498334	5498335	rs78142906	33483693	Clements CC	2021-01-22	Mol Psychiatry	Genome-wide association study of patients with a severe major depressive episode treated with electroconvulsive therapy.	Major depressive episode treated with electroconvulsive therapy	2,725 European ancestry cases, 3,290 European ancestry controls	NA	8p23.2	NR	rs78142906-?	NR	5E-6		0.5824	[0.35-0.82]	Illumina [NR] (imputed)	N
626	chr8	5502130	5502131	rs2527086	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Monoglobus pectinilyticus abundance in stool	5,959 Finnish ancestry individuals	NA	8p23.2		rs2527086-A	0.490367	2E-9		0.0637092	[0.043-0.084] unit increase	Illumina [7980478] (imputed)	N
626	chr8	5502130	5502131	rs2527086	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Monoglobus abundance in stool	5,959 Finnish ancestry individuals	NA	8p23.2		rs2527086-A	0.490367	4E-10		0.0731748	[0.05-0.096] unit increase	Illumina [7980478] (imputed)	N
626	chr8	5502871	5502872	rs2527084	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Monoglobaceae abundance in stool	5,959 Finnish ancestry individuals	NA	8p23.2		rs2527084-C	0.491349	3E-10		0.0708588	[0.049-0.093] unit decrease	Illumina [7980478] (imputed)	N
627	chr8	5532880	5532881	rs2527166	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	8p23.2		rs2527166-?	NR	2E-8				NR [~ 8900000] (imputed)	N
627	chr8	5538423	5538424	rs2527158	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	8p23.2		rs2527158-T	NR	5E-6		0.89154	[0.52-1.27] unit decrease	Illumina [NR] (imputed)	N
627	chr8	5543186	5543187	rs74848787	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	8p23.2		rs74848787-A	0.191322	3E-16		0.023136672	[0.018-0.029] unit increase	Affymetrix [93095623] (imputed)	N
627	chr8	5543186	5543187	rs74848787	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	8p23.2		rs74848787-A	0.191347	7E-17		0.023613673	[0.018-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
627	chr8	5543808	5543809	rs11774578	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	8p23.2		rs11774578-C	NR	2E-8		0.017	[0.011-0.023] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
627	chr8	5543808	5543809	rs11774578	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	8p23.2	NR	rs11774578-C	0.19127	5E-12		0.016978	[0.012-0.022] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
627	chr8	5544990	5544991	rs7817815	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8p23.2	NR	rs7817815-C	0.167048	2E-11				Affymetrix, Illumina [23114412] (imputed)	N
627	chr8	5545083	5545084	rs7814267	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	8p23.2	CSMD1	rs7814267-A	0.81462	3E-9		0.0108902	[0.0073-0.0145] unit decrease	Affymetrix [12370749]	N
627	chr8	5546823	5546824	rs17362923	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	8p23.2	NR	rs17362923-G	0.18902600000000003	3E-11		0.0233287	[0.016-0.03] unit increase	Affymetrix [16580851] (imputed)	N
627	chr8	5546823	5546824	rs17362923	27515689	Kerns SL	2016-07-20	EBioMedicine	Meta-analysis of Genome Wide Association Studies Identifies Genetic Markers of Late Toxicity Following Radiotherapy for Prostate Cancer.	Toxicity response to radiotherapy in prostate cancer (decreased urine stream) (time to event)	1,245 European ancestry individuals	NA	8p23.2	intergenic	rs17362923-G	0.18	7E-7		2.7	[1.83-4.00]	NR [~ 38000000] (imputed)	N
627	chr8	5548228	5548229	rs10503333	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	8p23.2		rs10503333-T	0.149773	2E-9		0.018660044	[0.013-0.025] unit increase	Affymetrix [93095623] (imputed)	N
627	chr8	5548426	5548427	rs141334776	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	8p23.2	NR	rs141334776-A	NR	9E-10		0.0175	[0.012-0.023] unit increase	Affymetrix [9000000] (imputed)	N
627	chr8	5593809	5593810	rs859812	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Neuritic plaque	up to 4,232 individuals	NA	8p23.2	intergenic	rs859812-T	0.5045	2E-6	(Ordinal)	0.2351	[0.14-0.33] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
628	chr8	5655765	5655766	rs11990843	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	8p23.2	NR	rs11990843-?	NR	5E-6	(AA)	5.26	[4.32-6.2]	Illumina [905956]	N
628	chr8	5666361	5666362	rs1512804	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	8p23.2	intergenic	rs1512804-C	NR	5E-6				Illumina [up to 11995908] (imputed)	N
628	chr8	5682121	5682122	rs6981976	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	8p23.2	NR	rs6981976-?	NR	3E-6		4.679	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
628	chr8	5734429	5734430	rs62493919	33713409	Chenoweth MJ	2021-03-13	Nicotine Tob Res	A genome-wide association study of nausea incidence in varenicline-treated cigarette smokers.	Nausea incidence in varenicline-treated smokers	57 European ancestry cases, 132 European ancestry controls	NA	8p23.2		rs62493919-C	NR	5E-6		0.35	[0.19-0.64]	Illumina [NR] (imputed)	N
628	chr8	5764941	5764942	rs2840445	23636237	Tanaka T	2013-05-01	Am J Clin Nutr	Genome-wide meta-analysis of observational studies shows common genetic variants associated with macronutrient intake.	Dietary macronutrient intake	37,537 European ancestry individuals	33,533 European ancestry individuals	8p23.2	NR	rs2840445-A	0.27	5E-6	(Carbohydrate)	0.22	[0.12-0.32] % decrease	Affymetrix, Illumina [2500000] (imputed)	N
629	chr8	5824904	5824905	rs13259125	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	8p23.2	Intergenic	rs13259125-T	0.3174	1E-8	(MTAG)	0.0101	[0.0066-0.0136] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
629	chr8	5876008	5876009	rs2703228	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8p23.2	ANGPT2	rs2703228-?	NR	1E-7	(trimethylamine N oxide)	0.2165371	[0.14-0.3] unit decrease	Affymetrix [at least 2500000] (imputed)	N
630	chr8	5917893	5917894	rs11136965	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	8p23.2	NR	rs11136965-?	NR	3E-14				Affymetrix [NR]	N
630	chr8	5929448	5929449	rs62494409	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 119)	19,670 European ancestry individuals	NA	8p23.2		rs62494409-?	NR	4E-8				NR [9705931] (imputed)	N
630	chr8	5950129	5950130	rs752045	27325353	Matteini AM	2016-06-21	Aging Cell	GWAS analysis of handgrip and lower body strength in older adults in the CHARGE consortium.	Hand grip strength	27,581 European ancestry individuals	6,393 individuals	8p23.2	CSMD1, LOC100287015	rs752045-G	0.18	5E-10		0.47	[0.31-0.63] kg increase	Affymetrix, Illumina [2725778] (imputed)	N
630	chr8	5982271	5982272	rs2077212	26305897	Iyengar SK	2015-08-25	PLoS Genet	Genome-Wide Association and Trans-ethnic Meta-Analysis for Advanced Diabetic Kidney Disease: Family Investigation of Nephropathy and Diabetes (FIND).	Diabetic kidney disease	1,564 African American cases, 369  African American diabetic controls, 1,288 African American non-diabetic controls, 538 American Indian ancestry cases, 319 American Indian ancestry diabetic controls, 342 European ancestry cases, 404 European ancestry diabetic controls, 779 Mexican ancestry cases, 594 Mexican ancestry diabetic controls	950 African American cases, 50 African American diabetic controls, 1,887 African American non-diabetic controls, 471 American Indian ancestry cases, 340 American Indian ancestry diabetic controls, 486 American Indian ancestry non-diabetic controls, 582 European ancestry ancestry cases, 205 European ancestry diabetic controls, 2,568 European ancestry non-diabetic controls	8p23.2	NR	rs2077212-G	0.48	4E-6	(American Indian, additive )	1.36	[1.20-1.55]	Affymetrix [NR]	N
630	chr8	5999310	5999311	rs2552220	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-8 levels	3,526 Finnish ancestry individuals	NA	8p23.2	NR	rs2552220-G		8E-6		0.1089	[0.061-0.157] SD units increase	NR [10700000] (imputed)	N
630	chr8	6001214	6001215	rs2552222	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8p23.2	NR	rs2552222-C	0.02439	3E-9	(NDUFAB1)	0.018	NR unit increase	Illumina [1671387] (imputed)	N
631	chr8	6085380	6085381	rs77759145	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	L1-L4 bone mineral density x serum urate levels interaction	2,207 men, 2,354 women	NA		AC009435.1	rs77759145-?	NR	3E-6		0.54	[NR] unit increase	Affymetrix [NR] (imputed)	N
631	chr8	6096134	6096135	rs7814179	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8p23.2	ANGPT2	rs7814179-?	NR	3E-6	(5-hydroxyindoleacetic acid)	0.6197709	[0.36-0.88] unit decrease	Affymetrix [at least 2500000] (imputed)	N
631	chr8	6097550	6097551	rs76815609	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	8p23.2	NR	rs76815609-?	NR	3E-7		2765.623	NR unit decrease	Illumina [2379855]	N
631	chr8	6152918	6152919	rs6559140	23319000	Luykx JJ	2013-01-15	Mol Psychiatry	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (5-HIAA)	up to 398 European ancestry individuals	NA	8p23.2	intergenic	rs6559140-A	NR	7E-6		0.2159	unit decrease	Illumina [5767231] (imputed)	N
632	chr8	6190358	6190359	rs71525726	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	8p23.1	MCPH1, ANGPT2	rs71525726-?		3E-6		1.299207	[1.18-1.40]	Illumina [9389922] (imputed)	N
632	chr8	6191417	6191418	rs141602583	27611488	Almoguera B	2016-09-09	Am J Respir Crit Care Med	Identification of Four Novel Loci in Asthma in European American and African American Populations.	Asthma (childhood onset)	1,181 African American allergic asthma child cases, 498 African American non-allergic asthma child cases, 2,993 African American child controls, 998 European American allergic asthma child cases, 182 European American non-allergic asthma child cases, 4,097 European American child controls.	NA	8p23.1	LOC100287015	rs141602583-?	NR	1E-6	(AA)			Affymetrix, Illumina [NR] (imputed)	N
632	chr8	6191417	6191418	rs141602583	27611488	Almoguera B	2016-09-09	Am J Respir Crit Care Med	Identification of Four Novel Loci in Asthma in European American and African American Populations.	Asthma	819 African American non-allergic asthma cases, 2,218 African American allergic asthma cases 4,360 African American controls, 808 European American non-allergic asthma cases, 1,464 European American allergic asthma cases, 11,975 European American controls	NA	8p23.1	LOC100287015	rs141602583-?		2E-7	(AA)	0.649	[0.4-0.89] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
632	chr8	6197482	6197483	rs192749492	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Periventricular white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	8p23.1	intergenic	rs192749492-A	0.992	3E-6		0.2788	[0.16-0.4] unit increase	Affymetrix, Illumina [NR] (imputed)	N
632	chr8	6202963	6202964	rs114252942	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	8p23.1	intergenic	rs114252942-A	0.001	1E-6		34.08	[3.52-329.69]	Illumina [1556551]	N
632	chr8	6208088	6208089	rs17533237	30675382	Leblond CS	2019-01-21	NPJ Genom Med	Both rare and common genetic variants contribute to autism in the Faroe Islands.	Autism	36 European ancestry, 176 European ancestry controls	NA	8p23.1	intergenic	rs17533237-A		6E-6				Illumina [1690491] (imputed)	N
632	chr8	6233348	6233349	rs145159462	34779240	Cheng B	2021-11-01	Bone Joint Res	Gut microbiota is associated with bone mineral density : an observational and genome-wide environmental interaction analysis in the UK Biobank cohort.	Total bone mineral density x gut microbiota (genus Dialister) interaction	2,293 European ancestry individuals	NA	8p23.1		rs145159462-C	NR	8E-9		0.532	[0.35-0.71] unit increase	Affymetrix [509886] (imputed)	N
632	chr8	6279510	6279511	rs1968586	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	8p23.1	ANGPT2	rs1968586-C	0.64046875	7E-6	(ANGPT2, 2602_2_2)	0.11258222	[0.064-0.162] unit increase	Illumina [> 1000000] (imputed)	N
632	chr8	6287865	6287866	rs7002187	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	8p23.1		rs7002187-T	0.18	8E-22		9.61	z score increase	Affymetrix [9061022] (imputed)	N
633	chr8	6291523	6291524	rs2442517	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	8p23.1		rs2442517-G	NR	1E-8		0.0125	[0.0082-0.0168] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
633	chr8	6303024	6303025	rs2584	26528553	Davenport ER	2015-11-03	PLoS One	Genome-Wide Association Studies of the Human Gut Microbiota.	Gut microbiome composition (winter)	93 Hutterite individuals	NA	8p23.1	NR	rs2584-?		6E-6	(family_Succinivibrionaceae)	0.7051268	[0.41-1] unit decrease	Affymetrix [211319]	N
633	chr8	6317266	6317267	rs2916746	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	8p23.1		rs2916746-G	0.18	2E-12		7.05	z score increase	Affymetrix [9061022] (imputed)	N
633	chr8	6317266	6317267	rs2916746	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	8p23.1	NR	rs2916746-G	0.1477	3E-14				NR [9056863] (imputed)	N
633	chr8	6317467	6317468	rs141862746	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Kidney cancer	1,338 European ancestry cases, 410,350 European ancestry controls	NA	8p23.1		rs141862746-T	NR	1E-8		4.3271313	NR	Affymetrix [7846216] (imputed)	N
633	chr8	6323277	6323278	rs2916733	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	8p23.1		rs2916733-A	0.19	1E-12		7.1	z score increase	Affymetrix [9061022] (imputed)	N
633	chr8	6323277	6323278	rs2916733	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	8p23.1	NR	rs2916733-A	0.1509	4E-14				NR [9056863] (imputed)	N
633	chr8	6323277	6323278	rs2916733	21799462	Srinivasan Y	2011-07-27	Pharmacogenet Genomics	Genome-wide association study of epirubicin-induced leukopenia in Japanese patients.	Epirubicin-induced leukopenia	67 Japanese ancestry cases, 203 Japanese ancestry controls	48 Japanese ancestry cases	8p23.1	MCPH1	rs2916733-C	0.39	2E-9		2.74	[1.96-3.83]	Illumina [478359]	N
633	chr8	6351251	6351252	rs17077154	21993531	Kuparinen T	2011-10-13	Genes Immun	Genome-wide association study does not reveal major genetic determinants for anti-cytomegalovirus antibody response.	Cytomegalovirus antibody response	1,485 European ancestry sero-postitive individuals, 648 European ancestry sero-negative individuals	NA	8p23.1	MCPH1	rs17077154-G	0.07	8E-6		0.302	[0.17-0.43] unit increase	Illumina [546677]	N
633	chr8	6351704	6351705	rs141416541	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Diastolic blood pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	8p23.1	chr8mb6	rs141416541-T	0.03375072	4E-7		0.4511	[0.28-0.63] unit decrease	Affymetrix [~ 9800000] (imputed)	N
633	chr8	6360288	6360289	rs76020419	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	8p23.1		rs76020419-T	NR	5E-10		0.0398	[0.027-0.052] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
633	chr8	6360288	6360289	rs76020419	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Intraocular pressure	101,939 European ancestry cases	NA	8p23.1	NR	rs76020419-G		5E-15		0.3	[0.22-0.38] unit increase	NR [NR]	N
633	chr8	6360288	6360289	rs76020419	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	8p23.1		rs76020419-?	NR	3E-9				NR [~ 8900000] (imputed)	N
633	chr8	6360288	6360289	rs76020419	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Intraocular pressure	133,492 European ancestry individuals	NA	8p23.1	ANGPT2	rs76020419-?	NR	5E-12		0.257	[0.18-0.33] unit decrease	Affymetrix, Illumina [up to 40000000] (imputed)	N
633	chr8	6360288	6360289	rs76020419	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	8p23.1	ANGPT2, MCPH1	rs76020419-G	0.964	2E-13		0.273	[0.2-0.35] unit increase	Affymetrix, Illumina [NR] (imputed)	N
633	chr8	6360288	6360289	rs76020419	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	8p23.1	ANGPT2	rs76020419-G	0.9641	2E-15		0.2949	[0.22-0.37] unit increase	Affymetrix [~ 11900000] (imputed)	N
633	chr8	6371475	6371476	rs1982386	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	8p23.1		rs1982386-?	NR	2E-11		0.016772	[0.012-0.022] unit increase	Affymetrix [20259828] (imputed)	N
633	chr8	6379931	6379932	rs2922895	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	NA	8p23.1	MCPH1	rs2922895-G	0.5706	6E-14		0.1317	[0.097-0.166] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
633	chr8	6387236	6387237	rs35735391	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 2)	19,670 European ancestry individuals	NA	8p23.1		rs35735391-?	NR	8E-9				NR [9705931] (imputed)	N
633	chr8	6388183	6388184	rs746073	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	8p23.1		rs746073-?	NR	1E-11				NR [~ 8900000] (imputed)	N
633	chr8	6388532	6388533	rs2442604	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	8p23.1	MCPH1	rs2442604-T	0.5458	3E-9		0.002	[0.0014-0.0026] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
633	chr8	6394150	6394151	rs2442599	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	8p23.1	MCPH1	rs2442599-G	0.275448	8E-14		0.0155661	[0.011-0.02] unit decrease	NR [13737936] (imputed)	N
633	chr8	6394150	6394151	rs2442599	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	8p23.1		rs2442599-?	NR	2E-13		0.0171584	[0.013-0.022] unit decrease	Affymetrix [20259828] (imputed)	N
633	chr8	6396762	6396763	rs13269021	24483146	Li L	2014-02-01	BMC Genomics	Discovery of genetic biomarkers contributing to variation in drug response of cytidine analogues using human lymphoblastoid cell lines.	Response to cytidine analogues (gemcitabine)	60 European ancestry lymphoblastoid cell lines, 54 African American lymphoblastoid cell lines, 60 Han Chinese ancestry lymphoblastoid cell lines	NA	8p23.1	ANGPT2	rs13269021-?		1E-6				Affymetrix, Illumina [1348798]	N
633	chr8	6412624	6412625	rs2515501	31533690	Orlova E	2019-09-18	BMC Oral Health	Pilot GWAS of caries in African-Americans shows genetic heterogeneity.	Dental caries (decayed and filled deciduous teeth)	96 African American children	NA	8p23.1	ANGPT2, DEFB1, DEFA1, DEFA1B, DEFA1P, DEFA3, DEFA4, DEFA6, DEFA8P, DEF9P	rs2515501-?		5E-6		6.477	[5.06-7.89] unit increase	Illumina [~ 4900000] (imputed)	N
634	chr8	6446937	6446938	rs62496903	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	8p23.1	MCPH1	rs62496903-T	0.08267	7E-12		0.032797	[0.023-0.042] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
634	chr8	6463784	6463785	rs150432113	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	8p23.1	MCPH1	rs150432113-G	0.999	3E-6	(AA)	0.355	unit increase	Illumina [NR] (imputed)	N
634	chr8	6468713	6468714	rs186046079	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	8p23.1	MCPH1	rs186046079-T	0.999	4E-7	(AA)	0.332	unit increase	Illumina [NR] (imputed)	N
634	chr8	6477297	6477298	rs185206099	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	8p23.1	MCPH1	rs185206099-C	0.999	5E-9	(AA)	0.377	unit increase	Illumina [NR] (imputed)	N
634	chr8	6485294	6485295	rs2912062	31801372	Strawbridge RJ	2019-12-05	Arterioscler Thromb Vasc Biol	Carotid Intima-Media Thickness: Novel Loci, Sex-Specific Effects, and Genetic Correlations With Obesity and Glucometabolic Traits in UKB.	Carotid intima media thickness (mean-maximum)	22,179 British ancestry individuals	NA	8p23.1	NR	rs2912062-C	0.70	3E-11		0.011	[0.0071-0.0149] unit increase	NR [NR] (imputed)	N
634	chr8	6485294	6485295	rs2912062	31801372	Strawbridge RJ	2019-12-05	Arterioscler Thromb Vasc Biol	Carotid Intima-Media Thickness: Novel Loci, Sex-Specific Effects, and Genetic Correlations With Obesity and Glucometabolic Traits in UKB.	Carotid intima media thickness (mean)	10,708 British ancestry men, 11,471 British ancestry women	NA	8p23.1	MCPH1, MIR8055	rs2912062-C	0.71	7E-14		0.012	[0.0081-0.0159] unit increase	NR [NR] (imputed)	N
634	chr8	6486032	6486033	rs2912063	31801372	Strawbridge RJ	2019-12-05	Arterioscler Thromb Vasc Biol	Carotid Intima-Media Thickness: Novel Loci, Sex-Specific Effects, and Genetic Correlations With Obesity and Glucometabolic Traits in UKB.	Carotid intima media thickness (mean)	10,708 British ancestry men, 11,471 British ancestry women	NA	8p23.1	MCPH1, MIR8055	rs2912063-A	0.71	3E-11	(men)	0.017	[0.011-0.023] unit increase	NR [NR] (imputed)	N
634	chr8	6486032	6486033	rs2912063	30510157	Franceschini N	2018-12-03	Nat Commun	GWAS and colocalization analyses implicate carotid intima-media thickness and carotid plaque loci in cardiovascular outcomes.	Carotid intima media thickness	Up to 71,128 European ancestry individuals	NA	8p23.1	MCPH1	rs2912063-A	0.71	9E-9		0.0045	[0.0029-0.0061] unit increase	Affymetrix, Illumina [9574088] (imputed)	N
634	chr8	6488576	6488577	rs3020264	28437668	Jung J	2017-04-14	Psychiatry Res	Genome-wide association study of treatment response to venlafaxine XR in generalized anxiety disorder.	Venlafaxine response in generalised anxiety disorder (remitters vs non-remitters after 24 weeks)	78 European ancestry cases, 20 European ancestry controls	NA	8p23.1	MCPH1	rs3020264-A	0.48	3E-6	(HAM-A)	4.7		Illumina [266820] (imputed)	N
634	chr8	6488920	6488921	rs3020265	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Faecalibacterium)	1,068 Japanese ancestry individuals	NA	8p23.1	MCPH1, CTD-2541M15.1	rs3020265-G	0.25	8E-6	(female)	0.0793	[0.045-0.114] unit increase	Illumina [6380737] (imputed)	N
634	chr8	6489567	6489568	rs138094162	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	8p23.1	MCPH1	rs138094162-G	0.999	6E-7	(AA)	0.287	unit increase	Illumina [NR] (imputed)	N
634	chr8	6490199	6490200	rs2433143	31801372	Strawbridge RJ	2019-12-05	Arterioscler Thromb Vasc Biol	Carotid Intima-Media Thickness: Novel Loci, Sex-Specific Effects, and Genetic Correlations With Obesity and Glucometabolic Traits in UKB.	Carotid intima media thickness (mean-maximum)	22,179 British ancestry individuals	NA	8p23.1	NR	rs2433143-C	0.73	1E-9		0.01	[0.0061-0.0139] unit increase	NR [NR] (imputed)	N
634	chr8	6494832	6494833	rs188858915	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	8p23.1	MCPH1	rs188858915-C	0.999	2E-6	(AA)	0.267	unit increase	Illumina [NR] (imputed)	N
634	chr8	6498689	6498690	rs141395649	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	8p23.1	MCPH1	rs141395649-C	0.999	3E-6	(AA)	0.27	unit increase	Illumina [NR] (imputed)	N
634	chr8	6500808	6500809	rs143335239	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	8p23.1	MCPH1	rs143335239-A	0.999	3E-6	(AA)	0.271	unit increase	Illumina [NR] (imputed)	N
634	chr8	6503454	6503455	rs60626139	33594131	Donati G	2021-02-16	Sci Rep	Evidence for specificity of polygenic contributions to attainment in English, maths and science during adolescence.	Academic attainment (maths)	6,017 European ancestry adolescents	NA	8p23.1	NR	rs60626139-T	NR	5E-6		0.093	[0.054-0.132] unit decrease	Illumina [6319684] (imputed)	N
634	chr8	6520627	6520628	rs13281444	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in dyslipidemia	295 Korean ancestry cases, 20,474 Korean ancestry controls	NA	8p23.1		rs13281444-T	0.3294	4E-6		1.478	[1.252-1.745]	Affymetrix [7975321] (imputed)	N
634	chr8	6526007	6526008	rs11137048	30456811	Moss LC	2018-11-19	Genet Epidemiol	Using Bayes model averaging to leverage both gene main effects and G x  E interactions to identify genomic regions in genome-wide association studies.	Asthma x air pollution interaction (2df)	606 Hispanic cases, 792 Hispanic controls, 643 European ancestry cases, 959 European ancestry controls	NA	8p23.1	NR	rs11137048-?	NR	3E-7				NR [6212909] (imputed)	N
634	chr8	6526354	6526355	rs55974823	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage colony stimulating factor levels	840 Finnish ancestry individuals	NA	8p23.1	NR	rs55974823-G	NR	9E-6		0.6278	[0.35-0.91] SD units increase	NR [10700000] (imputed)	N
634	chr8	6538370	6538371	rs181696879	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		8p23.1	Intergenic	rs181696879-A	0.994	4E-7	(liability model)	0.67	[0.42-0.92] unit decrease	NR [19725427] (imputed)	N
635	chr8	6563867	6563868	rs1365041	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	8p23.1		rs1365041-T	NR	5E-11		0.0141	[0.01-0.0182] unit increase	Affymetrix, Illumina [20536134] (imputed)	N
635	chr8	6563867	6563868	rs1365041	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	8p23.1		rs1365041-T	NR	3E-9		0.0137	[0.0092-0.0182] unit increase	Affymetrix, Illumina [20521447] (imputed)	N
635	chr8	6564575	6564576	rs2911987	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	8p23.1	NR	rs2911987-A	0.320055	3E-11		0.0136165	[0.0096-0.0176] unit decrease	Affymetrix [15000001]	N
635	chr8	6577139	6577140	rs2911980	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	8p23.1	AGPAT5	rs2911980-T	0.63	8E-9		5.77	z-score increase	Affymetrix [4312306] (imputed)	N
635	chr8	6585878	6585879	rs2980683	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	8p23.1		rs2980683-C	NR	3E-12		0.0165	[0.012-0.021] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
635	chr8	6587269	6587270	rs2980682	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	8p23.1	MIR4659A	rs2980682-A	0.343664	2E-15		0.00325707	[0.0025-0.0041] unit decrease	Affymetrix [13995440] (imputed)	N
635	chr8	6593205	6593208	rs59903897	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	8p23.1	NR	rs59903897-G	NR	2E-9		0.015	[0.01-0.02] unit increase	Affymetrix [9000000] (imputed)	N
635	chr8	6599004	6599005	rs2936512	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	8p23.1	AGPAT5	rs2936512-T	0.3019	9E-10		0.0144	[0.0099-0.0189] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
635	chr8	6601491	6601492	rs2912054	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	265,204 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p23.1	NR	rs2912054-G	NR	3E-9		0.02	unit decrease	Affymetrix [at least 7091467] (imputed)	N
635	chr8	6601491	6601492	rs2912054	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	265,204 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p23.1	NR	rs2912054-G	NR	2E-9		0.02	unit decrease	Affymetrix [at least 7091467] (imputed)	N
635	chr8	6601491	6601492	rs2912054	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	265,204 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p23.1	NR	rs2912054-G	NR	9E-8		0.016	unit decrease	Affymetrix [at least 7091467] (imputed)	N
635	chr8	6603585	6603585	rs767183976	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	8p23.1		rs767183976-TTTTCTTTCTGC	NR	4E-12		0.0167	[0.012-0.021] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
635	chr8	6607633	6607634	rs2911971	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	8p23.1	MIR4659A	rs2911971-C	0.37864	4E-14		0.00171461	[0.0012-0.0022] unit decrease	Affymetrix [13995440] (imputed)	N
635	chr8	6607633	6607634	rs2911971	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	8p23.1	AGPAT5	rs2911971-G	0.62	2E-8		5.59	z-score increase	Affymetrix [4311822] (imputed)	N
635	chr8	6607633	6607634	rs2911971	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	8p23.1	AGPAT5	rs2911971-G	NR	4E-9				Affymetrix, Illumina [NR] (imputed)	N
635	chr8	6607633	6607634	rs2911971	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	8p23.1	AGPAT5	rs2911971-G	NR	1E-8	(EA)			Affymetrix, Illumina [NR] (imputed)	N
635	chr8	6607633	6607634	rs2911971	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	8p23.1	AGPAT5	rs2911971-G	NR	8E-11				Affymetrix, Illumina [NR] (imputed)	N
635	chr8	6607633	6607634	rs2911971	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	8p23.1	AGPAT5	rs2911971-G	NR	4E-9	(EA)			Affymetrix, Illumina [NR] (imputed)	N
635	chr8	6607633	6607634	rs2911971	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	8p23.1	AGPAT5	rs2911971-G	NR	4E-7		0.743	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
635	chr8	6607633	6607634	rs2911971	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	8p23.1	AGPAT5	rs2911971-G	NR	2E-7	(EA)	0.897	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
635	chr8	6633127	6633128	rs2928601	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota (beta diversity)	858 Metropolitan French ancestry individuals	NA	8p23.1	NR	rs2928601-T	0.036	2E-8	(Unifrac metric)	5.4798417	NR z-score increase	Illumina [5293637] (imputed)	N
635	chr8	6639239	6639240	rs2936519	26222057	Pander J	2015-07-29	PLoS One	Genome Wide Association Study for Predictors of Progression Free Survival in Patients on Capecitabine, Oxaliplatin, Bevacizumab and Cetuximab in First-Line Therapy of Metastatic Colorectal Cancer.	Progression free survival in metastatic colorectal cancer (CAPOX-B vs CAPOX-B plus cetuximab)	256 cases treated with CAPOX-B plus cetuximab, 264 cases treated with CAPOX-B	NA	8p23.1	intergenic	rs2936519-A	NR	2E-7		1.8867927	[1.49-2.33]	Illumina [2850023] (imputed)	N
635	chr8	6645792	6645793	rs2912053	33888516	Zheng T	2021-04-22	Gut	Genome-wide analysis of 944 133 individuals provides insights into the etiology of haemorrhoidal disease.	Haemorrhoidal disease	218,920 European ancestry cases, 725,213 European ancestry controls	NA	8p23.1	intergenic	rs2912053-?	0.3983	2E-17		1.04	[1.03-1.05]	Affymetrix, Illumina [8494288] (imputed)	N
635	chr8	6646875	6646876	rs13282633	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Varicose veins	22,037 European ancestry cases, 437,665 European ancestry controls, 474 East Asian ancestry cases, 178,252 East Asian ancestry controls	NA	8p23.1		rs13282633-C	NR	2E-8		0.0616	[0.04-0.083] unit decrease	Affymetrix, Illumina [25842955] (imputed)	N
635	chr8	6647144	6647145	rs13275062	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	8p23.1		rs13275062-G	NR	8E-9		0.0148	[0.0097-0.0199] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
635	chr8	6654219	6654220	rs67694436	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	8p23.1	NR	rs67694436-T	NR	3E-9		0.0156	[0.011-0.021] unit increase	Affymetrix [9000000] (imputed)	N
635	chr8	6680822	6680823	rs10112030	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8p23.1	DEFB1	rs10112030-?	NR	9E-6	(CE 22:6)	0.36044353	[0.2-0.52] unit increase	Affymetrix [at least 2500000] (imputed)	N
636	chr8	6692908	6692909	rs2978895	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	8p23.1	XKR5	rs2978895-C	0.540512	4E-9		0.013117839	[0.0087-0.0175] unit increase	Affymetrix [93095623] (imputed)	N
636	chr8	6696016	6696017	rs2978893	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	8p23.1	GS1-24F4.2	rs2978893-G	0.471933	4E-30		0.025527513	[0.021-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
636	chr8	6696892	6696893	rs2951833	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	8p23.1	GS1-24F4.2	rs2951833-G	0.513072	2E-48		0.032783564	[0.028-0.037] unit increase	Affymetrix [93095623] (imputed)	N
636	chr8	6696926	6696927	rs2977799	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	8p23.1		rs2977799-A	0.489	2E-11				Affymetrix [10369434] (imputed)	N
636	chr8	6696926	6696927	rs2977799	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	8p23.1		rs2977799-A	0.489	3E-16				Affymetrix [10369434] (imputed)	N
636	chr8	6696926	6696927	rs2977799	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	8p23.1	GS1-24F4.2	rs2977799-G	0.510535	4E-45		0.03164822	[0.027-0.036] unit increase	Affymetrix [93095623] (imputed)	N
636	chr8	6697730	6697731	rs9314614	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count (basophil)	171,846 European ancestry individuals	NA	8p23.1	GS1-24F4.2	rs9314614-G	0.5343	7E-12		0.02419469	[0.017-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
636	chr8	6697730	6697731	rs9314614	26028593	Li M	2015-06-01	Nat Commun	Identification of new susceptibility loci for IgA nephropathy in Han Chinese.	IgA nephropathy	1,434 Han Chinese ancestry cases, 10,661 Han Chinese ancestry controls	6,879 Han Chinese ancestry cases, 9,019 Han Chinese ancestry controls	8p23.1	DEFA	rs9314614-C	0.36	9E-10		1.135	[1.1090-1.1182]	Illumina [3792949] (imputed)	N
636	chr8	6698247	6698248	rs4840638	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	8p23.1	GS1-24F4.2	rs4840638-G	0.536203	2E-53		0.03446674	[0.03-0.039] unit decrease	Affymetrix [93095623] (imputed)	N
636	chr8	6698412	6698413	rs4840639	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	8p23.1	GS1-24F4.2	rs4840639-A	0.510465	2E-9		0.013420804	[0.0091-0.0178] unit increase	Affymetrix [93095623] (imputed)	N
636	chr8	6698893	6698894	rs881362	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	8p23.1	GS1-24F4.2	rs881362-G	0.4993	1E-15		0.02873194	[0.022-0.036] unit decrease	Affymetrix [~ 2500000] (imputed)	N
636	chr8	6698893	6698894	rs881362	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	8p23.1	GS1-24F4.2	rs881362-G	0.4993	5E-16		0.02927692	[0.022-0.036] unit increase	Affymetrix [~ 2500000] (imputed)	N
636	chr8	6700887	6700888	rs11775706	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	8p23.1	GS1-24F4.2	rs11775706-T	0.4765	1E-9		0.02174739	[0.015-0.029] unit decrease	Affymetrix [~ 2500000] (imputed)	N
636	chr8	6703040	6703041	rs11776831	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of white cells	171,996 European ancestry individuals	NA	8p23.1	GS1-24F4.2	rs11776831-C	0.4942	3E-10		0.02212378	[0.015-0.029] unit increase	Affymetrix [~ 2500000] (imputed)	N
636	chr8	6726699	6726700	rs2741120	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	8p23.1	DEFB1	rs2741120-T	0.58328125	8E-60	(DEFB1, 6629_3_3)	0.39095902	[0.34-0.44] unit increase	Illumina [> 1000000] (imputed)	N
636	chr8	6731528	6731529	rs5743467	29317604	Liu D	2018-01-10	Transl Psychiatry	Beta-defensin 1, aryl hydrocarbon receptor and plasma kynurenine in major depressive disorder: metabolomics-informed genomics.	Plasma kynurenine to tryptophan ratio in major depressive disorder	290 European ancestry individuals	NA	8p23.1	DEFB1	rs5743467-G	0.25	2E-7		0.46	[NR] unit increase	Illumina [~ 7500000] (imputed)	N
636	chr8	6731528	6731529	rs5743467	29317604	Liu D	2018-01-10	Transl Psychiatry	Beta-defensin 1, aryl hydrocarbon receptor and plasma kynurenine in major depressive disorder: metabolomics-informed genomics.	Plasma kynurenine levels in major depressive disorder	290 European ancestry individuals	NA	8p23.1	DEFB1	rs5743467-G	0.25	8E-7		0.43	[NR] unit increase	Illumina [~ 7500000] (imputed)	N
636	chr8	6732896	6732897	rs5743454	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DEFB1	5,362 Icelandic ancestry individuals	NA	8p23.1		rs5743454-C	0.03713	7E-11		0.322103	[0.23-0.42] unit decrease	Illumina [7506463] (imputed)	N
636	chr8	6733870	6733871	rs2741130	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DEFB1	5,362 Icelandic ancestry individuals	NA	8p23.1		rs2741130-G	0.4324	2E-103		0.385925	[0.35-0.42] unit decrease	Illumina [7506463] (imputed)	N
636	chr8	6734686	6734687	rs2702945	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	8p23.1	NR	rs2702945-C	0.766	3E-39	(Beta-defensin 1, DEFB1.6629.3.3)	0.38	[0.32-0.44] unit decrease	Affymetrix [10572788] (imputed)	N
636	chr8	6738227	6738228	rs2738176	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	8p23.1	DEFB1	rs2738176-A	0.365	6E-55	(Beta-defensin 1, DEFB1.6629.3.3)	0.39	[0.35-0.43] unit decrease	Affymetrix [10572788] (imputed)	N
636	chr8	6750800	6750801	rs56677333	26626624	Stuart PE	2015-11-28	Am J Hum Genet	Genome-wide Association Analysis of Psoriatic Arthritis and Cutaneous Psoriasis Reveals Differences in Their Genetic Architecture.	Psoriatic arthritis	1,946 European ancestry cases, 4,934 European ancestry controls	up to 2,883 European ancestry cases, up to 14,179 European ancestry controls	8p23.1	DEFB1	rs56677333-C	NR	3E-6		1.45	NR	Illumina [11532644] (imputed)	N
636	chr8	6751691	6751692	rs28711761	31219150	Ekenberg C	2019-06-13	J Infect Dis	Single nucleotide polymorphisms in HLA alleles are associated with HIV-1 viral load in demographically diverse, ART-naive participants from the START trial.	Pre-treatment viral load in HIV-1 infection	1,398 European ancestry individuals, 572 Black individuals, 418 Hispanic individuals, 13 Asian ancestry individuals, 39 individuals	NA	8p23.1	intergenic	rs28711761-G	0.07	8E-19		0.4	[0.32-0.49] unit decrease	Affymetrix [339439]	N
636	chr8	6758697	6758698	rs4437673	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	8p23.1	GS1-24F4.1, DEFB1, DEFA6, DEFA4, DEFA8P	rs4437673-A	NR	7E-7	(sleep onset irregularity, weekdays)	0.1294	[0.078-0.181] unit increase	Affymetrix [7141204] (imputed)	N
636	chr8	6765031	6765032	rs2702888	24954895	Simino J	2014-06-19	Am J Hum Genet	Gene-age interactions in blood pressure regulation: a large-scale investigation with the CHARGE, Global BPgen, and ICBP Consortia.	Blood pressure	55,796 European ancestry individuals	43,445 European ancestry individuals, 1,849 Chinese ancestry individuals, 2,502 Malay ancestry individuals, 2,476 Asian Indian ancestry individuals, 1,855 Asian ancestry individuals	8p23.1	DEFB1, DEFA6	rs2702888-G	0.65	4E-7	(EA, PP, Age 20-29)	1.36	[0.83-1.89] mmHg decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
636	chr8	6776311	6776312	rs2741695	34269803	Casto A	2021-07-16	Blood	Genetic Variants Associated with Cytomegalovirus Infection after Allogeneic Hematopoietic Cell Transplantation.	Cytomegalovirus reactivation after allogeneic hematopoietic cell transplantation (donors)	up to 1,301 European ancestry donors	up to 868 European ancestry donors	8p23.1		rs2741695-?	NR	1E-7		1.58	[1.35-1.85]	Affymetrix, Illumina [29826485] (imputed)	N
636	chr8	6776318	6776319	rs62497593	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 23)	2,187 European ancestry individuals	NA	8p23.1	NR	rs62497593-C	0.03141	3E-6		0.4067	[0.24-0.58] unit decrease	Illumina [10677593] (imputed)	N
636	chr8	6779322	6779323	rs116129203	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	8p23.1	Intergenic	rs116129203-A	0.996	3E-6	(AA)	0.938	NR unit increase	Illumina [NR] (imputed)	N
636	chr8	6788101	6788102	rs2003880	25387704	Malone SM	2014-12-01	Psychophysiology	Heritability and molecular-genetic basis of resting EEG activity: a genome-wide association study.	Electroencephalogram traits	2,383 European ancestry adolescents and 1,643 European ancestry adults from 1,613 families	NA	8p23.1	intergenic	rs2003880-?	NR	4E-6	(Delta power, Cz)	0.062	[0.035-0.089] unit increase	Illumina [527829]	N
636	chr8	6793539	6793540	rs736227	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	8p23.1	DEFA4	rs736227-C	0.312228	5E-13		0.017356394	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
636	chr8	6794018	6794019	rs2239668	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	8p23.1	DEFA4	rs2239668-A	0.666735	4E-17		0.020049546	[0.015-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
636	chr8	6794018	6794019	rs2239668	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	8p23.1	DEFA4	rs2239668-A	0.666719	8E-19		0.021167787	[0.016-0.026] unit increase	Affymetrix [93095623] (imputed)	N
636	chr8	6794018	6794019	rs2239668	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	8p23.1	DEFA4	rs2239668-A	0.666748	2E-21		0.023237497	[0.018-0.028] unit increase	Affymetrix [93095623] (imputed)	N
636	chr8	6814745	6814746	rs144216266	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	8p23.1		rs144216266-A	0.986	6E-13				Affymetrix [10369434] (imputed)	N
637	chr8	6821616	6821617	rs2738058	26028593	Li M	2015-06-01	Nat Commun	Identification of new susceptibility loci for IgA nephropathy in Han Chinese.	IgA nephropathy	1,434 Han Chinese ancestry cases, 10,661 Han Chinese ancestry controls	6,879 Han Chinese ancestry cases, 9,019 Han Chinese ancestry controls	8p23.1	DEFA	rs2738058-T	0.666	2E-27		1.267	[1.214-1.323]	Illumina [3792949] (imputed)	N
637	chr8	6821616	6821617	rs2738058	24024966	Teumer A	2013-08-14	J Clin Periodontol	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (PAL4Q3)	up to 2,969 European ancestry individuals	NA	8p23.1	DEFA1	rs2738058-T	0.43	7E-6	(Age 20-60 years)	1.33	[1.18-1.51]	Affymetrix, Illumina [up to 17585496] (imputed)	N
637	chr8	6821616	6821617	rs2738058	24024966	Teumer A	2013-08-14	J Clin Periodontol	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (PAL4Q3)	up to 2,969 European ancestry individuals	NA	8p23.1	DEFA1	rs2738058-T	0.43	6E-6	(Age 20-81 years)	1.29	[1.16-1.45]	Affymetrix, Illumina [up to 17585496] (imputed)	N
637	chr8	6822784	6822785	rs2738048	26028593	Li M	2015-06-01	Nat Commun	Identification of new susceptibility loci for IgA nephropathy in Han Chinese.	IgA nephropathy	1,434 Han Chinese ancestry cases, 10,661 Han Chinese ancestry controls	6,879 Han Chinese ancestry cases, 9,019 Han Chinese ancestry controls	8p23.1	NR	rs2738048-A	0.675	5E-9		1.326	[1.215-1.447]	Illumina [3792949] (imputed)	N
637	chr8	6822784	6822785	rs2738048	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	8p23.1	DEFA	rs2738048-T	0.68	1E-7	(East Asian)	1.23	[NR]	Illumina [> 1000000] (imputed)	N
637	chr8	6822784	6822785	rs2738048	22197929	Yu XQ	2011-12-25	Nat Genet	A genome-wide association study in Han Chinese identifies multiple susceptibility loci for IgA nephropathy.	IgA nephropathy	1,434 Han Chinese ancestry cases, 4,270 Han Chinese ancestry controls	2,703 Han Chinese ancestry cases, 3,464 Han Chinese ancestry controls	8p23.1	DEFAs	rs2738048-A	0.68	3E-14		1.27	[1.19-1.35]	Illumina [444882]	N
637	chr8	6823294	6823295	rs2978951	28449029	Munz M	2017-04-25	Hum Mol Genet	A genome-wide association study identifies nucleotide variants at SIGLEC5 and DEFA1A3 as risk loci for periodontitis.	Aggressive periodontitis	851 European ancestry cases, 6,836 European ancestry controls	223 cases, up to 564 controls	8p23.1	DEFA1A3	rs2978951-A	0.41	2E-7		1.29	[1.17-1.42]	Illumina [at least 5870152] (imputed)	N
637	chr8	6823564	6823565	rs2702912	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of white cells	171,996 European ancestry individuals	NA	8p23.1	DEFA10P	rs2702912-G	0.866	3E-17		0.04315339	[0.033-0.053] unit decrease	Affymetrix [~ 2500000] (imputed)	N
637	chr8	6823564	6823565	rs2702912	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of granulocytes	170,223 European ancestry individuals	NA	8p23.1	DEFA10P	rs2702912-G	0.8659	4E-14		0.03901973	[0.029-0.049] unit decrease	Affymetrix [~ 2500000] (imputed)	N
637	chr8	6826042	6826043	rs2738144	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	SSC-A on granulocyte	3,112 Sardinian (founder/genetic isolate) ancestry individuals	NA	8p23.1		rs2738144-T	0.32117	2E-17		0.2464	[0.19-0.3] unit decrease	Illumina [18030748] (imputed)	N
637	chr8	6826042	6826043	rs2738144	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	8p23.1	DEFA5	rs2738144-A	0.74609375	7E-6	(DEFA5, 6387_61_3)	0.12341955	[0.07-0.177] unit increase	Illumina [> 1000000] (imputed)	N
637	chr8	6826520	6826521	rs2951842	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	8p23.1	DEFA10P	rs2951842-G	0.504334	2E-22		0.025664723	[0.021-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
637	chr8	6827018	6827019	rs56177108	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD80 on granulocyte	2,850 Sardinian (founder/genetic isolate) ancestry individuals	NA	8p23.1		rs56177108-A	0.13715	2E-11		0.2752	[0.2-0.35] unit increase	Illumina [17914520] (imputed)	N
637	chr8	6828794	6828795	rs12675296	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD80 on granulocyte	2,850 Sardinian (founder/genetic isolate) ancestry individuals	NA	8p23.1		rs12675296-A	0.02764	2E-15		0.6824	[0.52-0.85] unit decrease	Illumina [17914520] (imputed)	N
637	chr8	6828812	6828813	rs12675298	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD86 on granulocyte	2,848 Sardinian (founder/genetic isolate) ancestry individuals	NA	8p23.1		rs12675298-A	0.02779	7E-10		0.5258	[0.36-0.69] unit decrease	Illumina [17914327] (imputed)	N
637	chr8	6829084	6829085	rs2738113	21151130	Painter JN	2010-12-12	Nat Genet	Genome-wide association study identifies a locus at 7p15.2 associated with endometriosis.	Endometriosis	3,194 European ancestry cases, 7,060 European ancestry controls	2,392 European ancestry cases, 2,271 European ancestry controls	8p23.1	intergenic	rs2738113-G	0.44	3E-7		1.15	[1.09-1.22]	Illumina [504723]	N
637	chr8	6831203	6831204	rs60966186	28333195	Uimari O	2017-04-01	Hum Reprod	Genome-wide genetic analyses highlight mitogen-activated protein kinase (MAPK) signaling in the pathogenesis of endometriosis.	Endometriosis	3,194 European ancestry cases, 7,060 European ancestry controls.	NA	8p23.1	DEFA1	rs60966186-?	NR	1E-6		1.1764705	[1.09-1.27]	Illumina [NR] (imputed)	N
637	chr8	6833093	6833093	rs111470774	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	8p23.1	DEFA1	rs111470774-TA	0.015707	4E-20		0.08417936	[0.066-0.102] unit decrease	Affymetrix [93095623] (imputed)	N
637	chr8	6860798	6860799	rs7459916	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	8p23.1	DEFA1B	rs7459916-G	0.241729	3E-21		0.027707843	[0.022-0.033] unit increase	Affymetrix [93095623] (imputed)	N
637	chr8	6860798	6860799	rs7459916	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	8p23.1	DEFA1B	rs7459916-G	0.241684	2E-14		0.022324953	[0.017-0.028] unit increase	Affymetrix [93095623] (imputed)	N
637	chr8	6860798	6860799	rs7459916	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	8p23.1	DEFA1B	rs7459916-G	0.241667	3E-15		0.023201376	[0.017-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
637	chr8	6877415	6877416	rs535521164	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	8p23.1	DEFA3, DEFA1B	rs535521164-T	0.00393600000000005	6E-9		0.11873949	[0.079-0.159] unit decrease	Affymetrix [93095623] (imputed)	N
637	chr8	6877415	6877416	rs535521164	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	8p23.1	DEFA3, DEFA1B	rs535521164-T	0.00393500000000002	4E-9		0.12023426	[0.08-0.16] unit decrease	Affymetrix [93095623] (imputed)	N
637	chr8	6877695	6877696	rs145590580	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in dyslipidemia	295 Korean ancestry cases, 20,474 Korean ancestry controls	NA	8p23.1		rs145590580-G	0.02963	9E-6		2.167	[1.541-3.049]	Affymetrix [7975321] (imputed)	N
637	chr8	6878256	6878257	rs4284061	35023831	Chong M	2022-01-13	Elife	GWAS and ExWAS of blood Mitochondrial DNA copy number identifies 71 loci and highlights a potential causal role in dementia.	Mitochondrial DNA copy number	395,718 British, Irish, Other White, South Asian, African ancestry individuals	NA	8p23.1	NR	rs4284061-A	0.566294	3E-17		0.0186	[0.014-0.023] unit decrease	Affymetrix [23037915] (imputed)	N
637	chr8	6878256	6878257	rs4284061	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	8p23.1	DEFA1	rs4284061-A	0.4309375	3E-12	(DEFA1, 9250_87_3)	0.17056093	[0.12-0.22] unit increase	Illumina [> 1000000] (imputed)	N
637	chr8	6879396	6879397	rs140526216	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	8p23.1	DEFA3, DEFA1B	rs140526216-T	0.00917699999999999	6E-11		0.07787323	[0.055-0.101] unit decrease	Affymetrix [93095623] (imputed)	N
637	chr8	6879396	6879397	rs140526216	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	8p23.1	DEFA3, DEFA1B	rs140526216-T	0.00917900000000005	5E-9		0.06973986	[0.046-0.093] unit increase	Affymetrix [93095623] (imputed)	N
637	chr8	6880924	6880925	rs7826487	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	8p23.1		rs7826487-G	NR	1E-30		0.035	[0.029-0.041] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
637	chr8	6880924	6880925	rs7826487	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	8p23.1		rs7826487-A	0.884	4E-20				Affymetrix [10369434] (imputed)	N
637	chr8	6880924	6880925	rs7826487	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	8p23.1		rs7826487-A	0.884	7E-24				Affymetrix [10369434] (imputed)	N
637	chr8	6880924	6880925	rs7826487	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	8p23.1		rs7826487-A	0.884	6E-19				Affymetrix [10369434] (imputed)	N
637	chr8	6880924	6880925	rs7826487	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	8p23.1		rs7826487-G	0.115942	2E-75		0.06462537	[0.058-0.072] unit decrease	Affymetrix [93095623] (imputed)	N
637	chr8	6880924	6880925	rs7826487	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	8p23.1		rs7826487-G	0.115979	4E-50		0.052197192	[0.045-0.059] unit decrease	Affymetrix [93095623] (imputed)	N
637	chr8	6880924	6880925	rs7826487	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	8p23.1		rs7826487-G	0.116034	3E-49		0.051886678	[0.045-0.059] unit increase	Affymetrix [93095623] (imputed)	N
637	chr8	6880924	6880925	rs7826487	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	8p23.1		rs7826487-G	0.11605	4E-21		0.036421657	[0.029-0.044] unit increase	Affymetrix [93095623] (imputed)	N
637	chr8	6880924	6880925	rs7826487	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8p23.1	NR	rs7826487-G	0.131721	2E-41				Affymetrix, Illumina [23467995] (imputed)	N
637	chr8	6880924	6880925	rs7826487	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	8p23.1	NR	rs7826487-G	0.115769	2E-43		0.040998	[0.035-0.047] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
637	chr8	6880924	6880925	rs7826487	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count (basophil)	171,846 European ancestry individuals	NA	8p23.1	intergenic	rs7826487-G	0.1174	2E-14		0.04210421	[0.031-0.053] unit increase	Affymetrix [~ 2500000] (imputed)	N
637	chr8	6880924	6880925	rs7826487	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	8p23.1	intergenic	rs7826487-G	0.1174	2E-23		0.05602957	[0.045-0.067] unit decrease	Affymetrix [~ 2500000] (imputed)	N
637	chr8	6880924	6880925	rs7826487	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	8p23.1	intergenic	rs7826487-G	0.1174	7E-17		0.04697075	[0.036-0.058] unit decrease	Affymetrix [~ 2500000] (imputed)	N
637	chr8	6880924	6880925	rs7826487	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	8p23.1	intergenic	rs7826487-G	0.1174	2E-22		0.05472916	[0.044-0.066] unit increase	Affymetrix [~ 2500000] (imputed)	N
637	chr8	6881215	6881216	rs75970667	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in diabetes mellitus	153 Korean ancestry cases, 5,161 Korean ancestry controls	NA	8p23.1		rs75970667-C	0.05579	5E-6		2.361	[1.635-3.409]	Affymetrix [7975321] (imputed)	N
637	chr8	6887602	6887603	rs73661334	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	8p23.1	DEFA11P	rs73661334-G	0.01922	7E-24		0.08304675	[0.067-0.099] unit increase	Affymetrix [93095623] (imputed)	N
637	chr8	6887602	6887603	rs73661334	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	8p23.1	DEFA11P	rs73661334-G	0.019228	2E-15		0.06524893	[0.049-0.081] unit increase	Affymetrix [93095623] (imputed)	N
637	chr8	6888133	6888134	rs55851618	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DEFA1	5,367 Icelandic ancestry individuals	NA	8p23.1		rs55851618-C	0.4133	5E-16		0.156884	[0.12-0.19] unit increase	Illumina [7506463] (imputed)	N
637	chr8	6896166	6896167	rs34725312	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Abstraction and mental flexibility	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	8p23.1	DEFA11P	rs34725312-A	NR	2E-6		0.1806636	[0.11-0.25] unit decrease	Illumina [> 6200000] (imputed)	N
637	chr8	6898997	6898998	rs12716641	26028593	Li M	2015-06-01	Nat Commun	Identification of new susceptibility loci for IgA nephropathy in Han Chinese.	IgA nephropathy	1,434 Han Chinese ancestry cases, 10,661 Han Chinese ancestry controls	6,879 Han Chinese ancestry cases, 9,019 Han Chinese ancestry controls		DEFA	rs12716641-T	0.743	1E-18		1.233	[1.177-1.292]	Illumina [3792949] (imputed)	N
637	chr8	6899807	6899808	rs11989117	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	8p23.1		rs11989117-T	0.954	3E-8				Affymetrix [10369434] (imputed)	N
637	chr8	6900335	6900336	rs10086568	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	8p23.1		rs10086568-G	0.68	2E-24				Affymetrix [10369434] (imputed)	N
637	chr8	6900335	6900336	rs10086568	32912934	Li M	2020-09-10	J Am Soc Nephrol	Genome-Wide Meta-Analysis Identifies Three Novel Susceptibility Loci and Reveals Ethnic Heterogeneity of Genetic Susceptibility for IgA Nephropathy.	IgA nephropathy	2,628 Chinese ancestry cases, 11,563 Chinese ancestry controls	6,879 Han Chinese ancestry cases, 9,019 Han Chinese ancestry controls, 1,039 Italian ancestry cases, 1,289 Italian ancestry controls	8p23.1	DEFA	rs10086568-A	0.2850455501494895	1E-13	(East Asian)	1.1676031	[1.12074814397968-1.21641687788474]	NR [3611808] (imputed)	N
637	chr8	6900335	6900336	rs10086568	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	8p23.1	DEFA7P	rs10086568-A	0.320646	1E-23		0.0559632	[0.045-0.067] unit decrease	Affymetrix [93095623] (imputed)	N
637	chr8	6900335	6900336	rs10086568	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8p23.1	NR	rs10086568-A	0.304904	3E-57				Affymetrix, Illumina [19905671] (imputed)	N
637	chr8	6900335	6900336	rs10086568	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count (basophil)	171,846 European ancestry individuals	NA	8p23.1	DEFA7P	rs10086568-A	0.3223	3E-16		0.03102688	[0.024-0.038] unit decrease	Affymetrix [~ 2500000] (imputed)	N
637	chr8	6900335	6900336	rs10086568	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	8p23.1	DEFA	rs10086568-A	0.33	1E-9		1.16	[NR]	Illumina [> 1000000] (imputed)	N
637	chr8	6901303	6901304	rs12716647	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	8p23.1	DEFA7P	rs12716647-C	0.63741	3E-10		0.014491149	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
637	chr8	6901303	6901304	rs12716647	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	8p23.1	NR	rs12716647-C	0.637508	1E-10		0.012379	[0.0086-0.0161] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
637	chr8	6901303	6901304	rs12716647	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8p23.1	NR	rs12716647-C	0.62945	1E-11				Affymetrix, Illumina [23114412] (imputed)	N
637	chr8	6901303	6901304	rs12716647	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	8p23.1	NR	rs12716647-C	0.637362	1E-12		0.014273	[0.01-0.018] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
637	chr8	6902042	6902043	rs55690609	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	8p23.1		rs55690609-G	0.678	1E-16				Affymetrix [10369434] (imputed)	N
637	chr8	6902042	6902043	rs55690609	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	8p23.1	NR	rs55690609-A	0.322693	9E-57		0.03494	[0.031-0.039] SD unit decrease	Affymetrix, Illumina [50036608] (imputed)	N
637	chr8	6902621	6902622	rs6981058	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of white cells	171,996 European ancestry individuals	NA	8p23.1	intergenic	rs6981058-G	0.3858	3E-9		0.02126856	[0.014-0.028] unit increase	Affymetrix [~ 2500000] (imputed)	N
637	chr8	6903147	6903148	rs4379464	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	8p23.1		rs4379464-A	0.27531	5E-16		0.04516467	[0.034-0.056] unit increase	Affymetrix [93095623] (imputed)	N
637	chr8	6906039	6906040	rs11137087	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	8p23.1	intergenic	rs11137087-G	0.6314	4E-9		0.02199447	[0.015-0.029] unit increase	Affymetrix [~ 2500000] (imputed)	N
637	chr8	6906039	6906040	rs11137087	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	8p23.1	intergenic	rs11137087-G	0.6315	1E-25		0.03871361	[0.031-0.046] unit decrease	Affymetrix [~ 2500000] (imputed)	N
637	chr8	6906039	6906040	rs11137087	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	8p23.1	intergenic	rs11137087-G	0.6314	2E-26		0.03958353	[0.032-0.047] unit increase	Affymetrix [~ 2500000] (imputed)	N
637	chr8	6906924	6906925	rs13267464	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	8p23.1		rs13267464-T	0.399543	5E-39		0.030714422	[0.026-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
637	chr8	6906924	6906925	rs13267464	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	8p23.1		rs13267464-T	0.399579	4E-19		0.0209357	[0.016-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
637	chr8	6906924	6906925	rs13267464	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	8p23.1		rs13267464-T	0.399529	7E-36		0.02936739	[0.025-0.034] unit increase	Affymetrix [93095623] (imputed)	N
637	chr8	6911561	6911561	rs67018289	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	349,856 European ancestry individuals, 91,908 East Asian ancestry individuals	NA	8p23.1		rs67018289-GT	NR	1E-21		0.0194	[0.015-0.023] unit increase	Affymetrix, Illumina [20529536] (imputed)	N
637	chr8	6913030	6913031	rs2272719	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	8p23.1		rs2272719-G	0.622	2E-10				Affymetrix [10369434] (imputed)	N
637	chr8	6913030	6913031	rs2272719	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	8p23.1	DEFA5	rs2272719-A	0.377203	7E-14		0.02169529	[0.016-0.027] unit increase	Affymetrix [93095623] (imputed)	N
637	chr8	6933372	6933373	rs117880470	25839716	Ng E	2015-04-02	Environ Res	Genome-wide association study of plasma levels of polychlorinated biphenyls disclose an association with the CYP2B6 gene in a population-based sample.	Polychlorinated biphenyl levels	922 European ancestry individuals	NA	8p23.1	NR	rs117880470-?		6E-7	(PCB118)	0.81	[0.5-1.12] unit decrease	Illumina [8736858] (imputed)	N
638	chr8	6999134	6999135	rs117025875	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cerebrospinal fluid p-Tau181p:AB1-42 ratio	up to 189 European and other ancestry early mild cognitive impairment cases,  up to 251 European and other ancestry late mild cognitive impairment cases,  up to 121 European and other ancestry Alzheimer's disease cases,  up to 215 European and other ancestry healthy controls	up to 3 European and other ancestry significant memory concern cases,  up to 57 European and other ancestry early mild cognitive impairment cases,   up to 61 European and other ancestry late mild cognitive impairment cases,  up to 62 European and other ancestry Alzheimer's disease cases,  up to 21 European and other ancestry healthy controls	8p23.1	DEFA5, LOC349196	rs117025875-G	0.02	9E-7		0.8594	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
639	chr8	7189357	7189358	rs9692809	20395239	Macgregor S	2010-04-15	Hum Mol Genet	Genome-wide association identifies ATOH7 as a major gene determining human optic disc size.	Optic nerve measurement (cup-to-disc ratio)	1,368 European ancestry twins from 666 families	848 European ancestry twins from 531 families	8p23.1	LOC401447	rs9692809-C	NR	6E-6		0.126	[-0.11704-0.36904] unit decrease	Illumina [~ 2740000] (imputed)	N
639	chr8	7189357	7189358	rs9692809	20395239	Macgregor S	2010-04-15	Hum Mol Genet	Genome-wide association identifies ATOH7 as a major gene determining human optic disc size.	Optic nerve measurement (cup area)	1,368 European ancestry twins from 666 families	848 European ancestry twins from 531 families	8p23.1	LOC401447	rs9692809-C	NR	8E-6		0.094	[-0.14708-0.33508] unit decrease	Illumina [~ 2740000] (imputed)	N
640	chr8	7243015	7243016	rs183772362	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	8p23.1	DEFB104A	rs183772362-T	0.033	2E-12	(Beta-defensin 104, DEFB104A.5763.67.3)	0.5	[0.36-0.64] unit increase	Affymetrix [10572788] (imputed)	N
645	chr8	7995382	7995383	rs2728901	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	8p23.1		rs2728901-?	NR	9E-26		0.0370254	[0.03-0.044] unit decrease	Affymetrix [20259828] (imputed)	N
646	chr8	8035790	8035791	rs1712606	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	8p23.1		rs1712606-?	NR	1E-11		0.0569145	[0.041-0.073] unit increase	Affymetrix [20259828] (imputed)	N
646	chr8	8088229	8088230	rs2980478	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small HDL	115,082 European ancestry individuals	NA	8p23.1		rs2980478-T	0.527111	3E-14		0.0319796	[0.024-0.04] unit increase	NR [11722792] (imputed)	N
646	chr8	8088229	8088230	rs2980478	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small HDL	115,082 European ancestry individuals	NA	8p23.1		rs2980478-T	0.527111	1E-14		0.0321443	[0.024-0.04] unit increase	NR [11722792] (imputed)	N
646	chr8	8088229	8088230	rs2980478	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small HDL particles	115,082 European ancestry individuals	NA	8p23.1		rs2980478-T	0.527111	5E-11		0.0277901	[0.02-0.036] unit increase	NR [11722792] (imputed)	N
646	chr8	8088229	8088230	rs2980478	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	8p23.1		rs2980478-T	0.527111	6E-10		0.0234427	[0.016-0.031] unit decrease	NR [11722792] (imputed)	N
646	chr8	8088229	8088230	rs2980478	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small HDL	115,082 European ancestry individuals	NA	8p23.1		rs2980478-T	0.527111	1E-9		0.0257149	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
646	chr8	8088229	8088230	rs2980478	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	8p23.1		rs2980478-T	0.527111	2E-11		0.0255983	[0.018-0.033] unit decrease	NR [11722792] (imputed)	N
646	chr8	8088229	8088230	rs2980478	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small HDL	115,082 European ancestry individuals	NA	8p23.1		rs2980478-T	0.527111	2E-9		0.0253664	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
646	chr8	8088229	8088230	rs2980478	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	8p23.1		rs2980478-C	NR	2E-8		0.0118	[0.0077-0.0159] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
646	chr8	8088229	8088230	rs2980478	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on Townsend deprivation index (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	8p23.1		rs2980478-?	NR	2E-14				NR [NR]	N
646	chr8	8088229	8088230	rs2980478	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	8p23.1	FAM86B3P	rs2980478-C	NR	2E-23		0.0406653	[0.033-0.049] unit increase	Affymetrix [16832071] (imputed)	N
646	chr8	8088932	8088933	rs2945319	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	8p23.1		rs2945319-T	0.529266	1E-8		0.0225929	[0.015-0.03] unit decrease	NR [11722792] (imputed)	N
646	chr8	8092024	8092025	rs2980436	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	8p23.1	FLJ10661	rs2980436-A	NR	4E-7		1.052	[1.03-1.07]	Illumina [6627481] (imputed)	N
646	chr8	8092024	8092025	rs2980436	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	8p23.1	ERI1, FAM85B, FAM86B3P, FAM86C1	rs2980436-A	NR	2E-8		1.057	[1.04-1.08]	Affymetrix, Illumina [up to 5107227] (imputed)	N
646	chr8	8092404	8092405	rs1878561	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	8p23.1	FLJ10661	rs1878561-A	NR	1E-7	(EA)	1.059322	[1.04-1.08]	Illumina [6627481] (imputed)	N
646	chr8	8092757	8092758	rs143934274	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	L1-L4 bone mineral density x serum urate levels interaction	2,207 men, 2,354 women	NA		FAM86B3P	rs143934274-?	NR	8E-6	(female)	0.727293	[NR] unit increase	Affymetrix [NR] (imputed)	N
646	chr8	8093591	8093592	rs2945252	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8p23.1	FAM86B3P, ALG1L13P	rs2945252-T	NR	2E-10		0.0181881	[0.013-0.024] unit decrease	Affymetrix [321114] (imputed)	N
646	chr8	8093591	8093592	rs2945252	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	8p23.1	FAM86B3P, ALG1L13P	rs2945252-T	NR	1E-8		0.0164591	[0.011-0.022] unit decrease	Affymetrix [321169] (imputed)	N
646	chr8	8094824	8094825	rs2980438	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	FAM86B3P, ALG1L13P	rs2980438-T	NR	2E-11		0.0210622	[0.015-0.027] unit increase	Affymetrix [323858] (imputed)	N
646	chr8	8094824	8094825	rs2980438	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	FAM86B3P, ALG1L13P	rs2980438-T	NR	9E-13		0.0224256	[0.016-0.029] unit increase	Affymetrix [127266] (imputed)	N
646	chr8	8094869	8094870	rs2980439	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	8p23.1	intergenic	rs2980439-A	0.46895	7E-28		10.944	z score decrease	Illumina [18485882] (imputed)	N
646	chr8	8094960	8094961	rs2948294	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	8p23.1	FAM86B3P, ALG1L13P	rs2948294-G	0.4329	6E-26		0.03831231	[0.031-0.045] unit increase	Affymetrix [~ 2500000] (imputed)	N
646	chr8	8096003	8096004	rs2945247	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Processed meat consumption	335,576 European ancestry individuals	NA	8p23.1	PRAG1, MFHAS1, ERI1	rs2945247-?	NR	5E-11		0.0163992	[0.012-0.021] unit increase	Affymetrix [25921788] (imputed)	N
646	chr8	8098037	8098038	rs2945232	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	8p23.1		rs2945232-T	0.532327	4E-9		0.0228862	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
646	chr8	8098037	8098038	rs2945232	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	8p23.1		rs2945232-T	0.532336	6E-11		0.0252076	[0.018-0.033] unit increase	NR [11722792] (imputed)	N
646	chr8	8098037	8098038	rs2945232	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	8p23.1		rs2945232-T	0.532327	6E-12		0.0270939	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
646	chr8	8098037	8098038	rs2945232	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	8p23.1		rs2945232-T	0.532327	6E-11		0.0254281	[0.018-0.033] unit decrease	NR [11722792] (imputed)	N
646	chr8	8098037	8098038	rs2945232	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	8p23.1		rs2945232-T	0.532327	2E-11		0.0263321	[0.019-0.034] unit decrease	NR [11722792] (imputed)	N
646	chr8	8098037	8098038	rs2945232	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	ALG1L13P, FAM86B3P	rs2945232-T	NR	5E-17		0.014614	[0.011-0.018] unit decrease	Affymetrix [18485882] (imputed)	N
646	chr8	8098037	8098038	rs2945232	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	8p23.1	NR	rs2945232-C	0.465417480813385	1E-27		0.020243598	[0.017-0.024] unit decrease	NR [NR]	N
646	chr8	8098037	8098038	rs2945232	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	8p23.1	NR	rs2945232-C	NR	2E-8		1.0638298	[NR]	Illumina [7158791] (imputed)	N
646	chr8	8098078	8098079	rs2955587	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8p23.1	NR	rs2955587-G	0.48198	2E-13				Affymetrix, Illumina [19905671] (imputed)	N
646	chr8	8098078	8098079	rs2955587	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	8p23.1	FLJ10661	rs2955587-?	NR	6E-10		1.11	[1.06-1.17]	Illumina [at least 5000000] (imputed)	N
646	chr8	8106507	8106508	rs2948300	31888951	Schlauch KA	2019-12-30	G3 (Bethesda)	A Comprehensive Genome-Wide and Phenome-Wide Examination of BMI and Obesity in a Northern Nevadan Cohort.	Obesity (extreme)	984 cases, 2,012 controls	NA	8p23.1	intergenic	rs2948300-T	0.4906	1E-6		1.325	[1.21-1.44]	Illumina [500508]	N
646	chr8	8109935	8109936	rs2945230	35132056	Mitchell BL	2022-02-07	Nat Commun	Genome-wide association meta-analysis identifies 29 new acne susceptibility loci.	acne vulgaris	20,165 European ancestry cases, 595,231 European ancestry controls	NA	8p23.1	NR	rs2945230-G	0.5252	5E-8		1.07	[1.04-1.09]	Affymetrix, Illumina [7072771] (imputed)	N
646	chr8	8114140	8114141	rs2980419	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	FAM86B3P	rs2980419-A	NR	4E-11		0.0205314	[0.014-0.027] unit increase	Affymetrix [321114] (imputed)	N
646	chr8	8114140	8114141	rs2980419	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	8p23.1	FAM86B3P	rs2980419-A	NR	2E-9		0.0187864	[0.013-0.025] unit increase	Affymetrix [323858] (imputed)	N
646	chr8	8114542	8114543	rs1915986	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycoprotein acetyls levels	115,082 European ancestry individuals	NA	8p23.1		rs1915986-A	0.495512	5E-9		0.0239287	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
646	chr8	8115303	8115304	rs2948288	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total fatty acid levels	115,006 European ancestry individuals	NA	8p23.1		rs2948288-A	0.495151	2E-9		0.0247416	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
646	chr8	8116905	8116906	rs4840913	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	FAM86B3P	rs4840913-T	NR	5E-10		0.01075	[0.0074-0.0141] unit decrease	Affymetrix [18485882] (imputed)	N
646	chr8	8119715	8119716	rs712255	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	8p23.1	DEFB109P1B, SGK223	rs712255-A	0.6212	1E-13		1.0275		Affymetrix [11880941] (imputed)	N
647	chr8	8134808	8134809	rs1543238	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	8p23.1	FAM86B3P	rs1543238-A	0.5267	1E-17		0.0025	[0.0017-0.0033] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
647	chr8	8136655	8136656	rs62495153	25625606	Mather KA	2015-01-27	PLoS One	Investigating the genetics of hippocampal volume in older adults without dementia.	Hippocampal volume	498 European ancestry older adult individuals	NA	8p23.1	intergenic	rs62495153-T		8E-6		254.89	[142.78-367] unit decrease	Affymetrix, Illumina [at least 646791] (imputed)	N
647	chr8	8140900	8140901	rs2980512	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	8p23.1	NR	rs2980512-T	0.528837	1E-13		0.0162131	[0.012-0.02] unit decrease	NR [NR]	N
647	chr8	8140900	8140901	rs2980512	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls	NA	8p23.1	FAM86B3P	rs2980512-?	NR	4E-10		1.15	[1.10-1.20]	Illumina [at least 5000000] (imputed)	N
647	chr8	8141822	8141823	rs35571782	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	8p23.1	SGK223	rs35571782-C	NR	4E-8		0.0155763	[0.01-0.021] unit decrease	Affymetrix [321016] (imputed)	N
647	chr8	8142574	8142575	rs2980423	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	8p23.1	PRAG1	rs2980423-T	0.4891	8E-17		0.0023	[0.0017-0.0029] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
647	chr8	8143523	8143524	rs1464246	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	8p23.1		rs1464246-T	NR	5E-9		0.016	[0.011-0.021] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
647	chr8	8149672	8149673	rs59224164	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	SGK223	rs59224164-C	NR	1E-8		0.0181349	[0.012-0.024] unit increase	Affymetrix [321114] (imputed)	N
647	chr8	8149986	8149987	rs544096562	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	8p23.1		rs544096562-G	0.0010531	4E-6		0.48204	[0.28-0.69] unit decrease	Affymetrix [15580782] (imputed)	N
647	chr8	8168412	8168413	rs7014953	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	8p23.1	SGK223	rs7014953-A	0.6	8E-9				NR [> 9500000] (imputed)	N
647	chr8	8168473	8168474	rs17603933	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	SGK223	rs17603933-G	NR	3E-9		0.01029	[0.0069-0.0137] unit increase	Affymetrix [18485882] (imputed)	N
647	chr8	8168986	8168987	rs7841082	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	SGK223	rs7841082-C	NR	2E-11		0.011708	[0.0083-0.0151] unit increase	Affymetrix [18485882] (imputed)	N
647	chr8	8168986	8168987	rs7841082	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	8p23.1	SGK223	rs7841082-T	0.438275980628985	5E-8		0.042	[0.027-0.057] unit decrease	NR [5035015] (imputed)	N
647	chr8	8174226	8174227	rs13439831	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	8p23.1	NR	rs13439831-C	NR	9E-11		0.0235	[0.016-0.031] unit decrease	Affymetrix [9000000] (imputed)	N
647	chr8	8174226	8174227	rs13439831	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	8p23.1	NR	rs13439831-C	NR	3E-9		0.0215	[0.014-0.029] unit decrease	Affymetrix [9000000] (imputed)	N
647	chr8	8174532	8174533	rs2980505	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	SGK223	rs2980505-T	NR	5E-9		0.010079	[0.0067-0.0135] unit decrease	Affymetrix [18485882] (imputed)	N
647	chr8	8176553	8176554	rs12549973	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	8p23.1	NR	rs12549973-T	NR	4E-11		0.0184	[0.013-0.024] unit increase	Affymetrix [9000000] (imputed)	N
647	chr8	8176553	8176554	rs12549973	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	8p23.1	NR	rs12549973-T	NR	1E-11		0.0182	[0.013-0.023] unit increase	Affymetrix [9000000] (imputed)	N
647	chr8	8176553	8176554	rs12549973	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	8p23.1	NR	rs12549973-T	NR	1E-9		0.0163	[0.011-0.022] unit increase	Affymetrix [9000000] (imputed)	N
647	chr8	8179638	8179639	rs73184312	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume (adjusted for hypertension)	46,055 European ancestry individuals, 2,469 African American individuals	NA	8p23.1	SGK223	rs73184312-G	NR	1E-7		0.0348	[0.022-0.048] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
647	chr8	8179638	8179639	rs73184312	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume (adjusted for hypertension)	46,055 European ancestry individuals	NA	8p23.1	SGK223	rs73184312-G	0.72	5E-8		0.035	[0.023-0.047] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
647	chr8	8179638	8179639	rs73184312	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	48,454 European ancestry individuals	NA	8p23.1	SGK223	rs73184312-G	NR	2E-9		0.038	[0.026-0.05] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
647	chr8	8179638	8179639	rs73184312	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	2,516 African American individuals, 48,454 European ancestry individuals	NA	8p23.1	SGK223	rs73184312-G	0.7259	7E-9		0.0373	[0.025-0.05] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
647	chr8	8192228	8192229	rs2945908	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Squamous cell lung carcinoma	8,350 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	8p23.1	NR	rs2945908-C	0.22	8E-7		0.89	[0.85-0.93]	NR [NR] (imputed)	N
647	chr8	8194357	8194358	rs79503460	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	8p23.1	NR	rs79503460-C	NR	4E-12		0.022	[0.016-0.028] unit increase	Affymetrix [9000000] (imputed)	N
647	chr8	8194357	8194358	rs79503460	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	8p23.1	NR	rs79503460-C	NR	4E-10		0.0199	[0.014-0.026] unit increase	Affymetrix [9000000] (imputed)	N
647	chr8	8205009	8205010	rs11785239	30510157	Franceschini N	2018-12-03	Nat Commun	GWAS and colocalization analyses implicate carotid intima-media thickness and carotid plaque loci in cardiovascular outcomes.	Carotid intima media thickness	Up to 71,128 European ancestry individuals	NA	8p23.1	SGK223	rs11785239-T	0.65	9E-9		0.0043	[0.0027-0.0059] unit decrease	Affymetrix, Illumina [9574088] (imputed)	N
647	chr8	8205443	8205444	rs28454025	26379185	Garcia-Etxebarria K	2015-09-17	PLoS One	No Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity.	Influenza A (H1N1) severity	49 European ancestry severe cases, 107 European ancestry mild cases	NA	8p23.1	SGK223	rs28454025-?	NR	6E-8				Affymetrix [547296]	N
647	chr8	8209494	8209495	rs28574846	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8p23.1	NR	rs28574846-C	0.05052	9E-9	(UCHL3)	0.007492	NR unit decrease	Illumina [1671387] (imputed)	N
647	chr8	8209494	8209495	rs28574846	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8p23.1	NR	rs28574846-C	0.05052	9E-9	(QARS)	0.04601	NR unit decrease	Illumina [1671387] (imputed)	N
647	chr8	8209494	8209495	rs28574846	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8p23.1	NR	rs28574846-C	0.05052	8E-10	(ATIC)	0.102	NR unit decrease	Illumina [1671387] (imputed)	N
647	chr8	8209494	8209495	rs28574846	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8p23.1	NR	rs28574846-C	0.05052	7E-9	(DUSP3)	0.02601	NR unit decrease	Illumina [1671387] (imputed)	N
647	chr8	8209494	8209495	rs28574846	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8p23.1	NR	rs28574846-C	0.05052	3E-8	(ABHD14B)	0.2075	NR unit decrease	Illumina [1671387] (imputed)	N
647	chr8	8209494	8209495	rs28574846	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8p23.1	NR	rs28574846-C	0.05052	2E-8	(GCLC)	0.04774	NR unit decrease	Illumina [1671387] (imputed)	N
647	chr8	8209494	8209495	rs28574846	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8p23.1	NR	rs28574846-C	0.05052	2E-8	(ECI2)	3.306	NR unit increase	Illumina [1671387] (imputed)	N
647	chr8	8216985	8216986	rs4840941	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	SGK223	rs4840941-A	NR	5E-9		0.0182562	[0.012-0.024] unit increase	Affymetrix [321114] (imputed)	N
647	chr8	8218596	8218597	rs7005904	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	8p23.1	SGK223	rs7005904-T	NR	6E-9		0.0181567	[0.012-0.024] unit increase	Affymetrix [323858] (imputed)	N
647	chr8	8218596	8218597	rs7005904	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	8p23.1	NR	rs7005904-C	0.502748	1E-11		0.0455208	[0.032-0.059] unit increase	Affymetrix [17914406] (imputed)	N
647	chr8	8222191	8222192	rs11996133	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	8p23.1	NR	rs11996133-G	NR	8E-13		0.0254	[0.019-0.032] unit increase	Affymetrix [9000000] (imputed)	N
647	chr8	8222191	8222192	rs11996133	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	8p23.1	NR	rs11996133-G	NR	2E-10		0.0225	[0.015-0.03] unit increase	Affymetrix [9000000] (imputed)	N
647	chr8	8236676	8236677	rs2976958	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	SGK223	rs2976958-C	NR	2E-14		0.013322	[0.0099-0.0167] unit decrease	Affymetrix [18485882] (imputed)	N
647	chr8	8236957	8236958	rs75743440	33190678	Ho YYW	2020-10-01	Twin Res Hum Genet	Comparison of Genome-Wide Association Scans for Quantitative and Observational Measures of Human Hair Curvature.	Hair curvature (quantitative)	2,225 European ancestry individuals	NA	8p23.1	NR	rs75743440-?		4E-6		0.028	[0.016-0.04] unit increase	Illumina [7533529] (imputed)	N
647	chr8	8244298	8244299	rs882687	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	SGK223	rs882687-T	NR	9E-10		0.0216318	[0.015-0.029] unit increase	Affymetrix [321114] (imputed)	N
647	chr8	8252624	8252625	rs56365922	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8p23.1	SGK223	rs56365922-A	NR	4E-10		0.0197084	[0.014-0.026] unit increase	Affymetrix [321114] (imputed)	N
647	chr8	8252624	8252625	rs56365922	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	SGK223	rs56365922-A	NR	2E-8		0.0193203	[0.013-0.026] unit increase	Affymetrix [321114] (imputed)	N
647	chr8	8254874	8254875	rs2976933	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	SGK223	rs2976933-T	NR	1E-8		0.0180644	[0.012-0.024] unit increase	Affymetrix [323858] (imputed)	N
647	chr8	8254874	8254875	rs2976933	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	SGK223	rs2976933-T	NR	1E-9		0.0193151	[0.013-0.026] unit increase	Affymetrix [127266] (imputed)	N
647	chr8	8255318	8255319	rs2976932	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (multi-trait analysis)	90,939 European ancestry individuals	NA	8p23.1	SGK223, CLDN23	rs2976932-T	0.11	8E-14		0.01	NR unit decrease	Affymetrix, Illumina [8002429] (imputed)	N
647	chr8	8255318	8255319	rs2976932	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (adjusted for vertical disc diameter)	67,040 British ancestry individuals	NA	8p23.1	SGK223	rs2976932-T	0.11	1E-10		0.00918	[0.0064-0.012] unit decrease	Affymetrix [at least 8002429] (imputed)	N
648	chr8	8258018	8258019	rs2979151	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	SGK223	rs2979151-G	NR	1E-12		0.01235	[0.0089-0.0158] unit decrease	Affymetrix [18485882] (imputed)	N
648	chr8	8260423	8260424	rs2945874	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	CTA-398F10.1	rs2945874-G	NR	5E-9		0.0199613	[0.013-0.027] unit decrease	Affymetrix [323858] (imputed)	N
648	chr8	8260423	8260424	rs2945874	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	CTA-398F10.1	rs2945874-G	NR	7E-10		0.0210419	[0.014-0.028] unit decrease	Affymetrix [127266] (imputed)	N
648	chr8	8260423	8260424	rs2945874	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	ENSG00000253505	rs2945874-C	NR	6E-10		0.010803	[0.0074-0.0142] unit decrease	Affymetrix [18485882] (imputed)	N
648	chr8	8262060	8262061	rs2945870	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8p23.1	CTA-398F10.1	rs2945870-T	NR	3E-8		0.0175328	[0.011-0.024] unit decrease	Affymetrix [321114] (imputed)	N
648	chr8	8266396	8266397	rs2976921	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	CTA-398F10.1	rs2976921-C	NR	2E-8		0.0188899	[0.012-0.025] unit decrease	Affymetrix [321114] (imputed)	N
648	chr8	8268312	8268313	rs2979139	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	CTA-398F10.1	rs2979139-G	NR	2E-11		0.0206522	[0.015-0.027] unit decrease	Affymetrix [321114] (imputed)	N
648	chr8	8268312	8268313	rs2979139	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	8p23.1	SGK223, CLDN23	rs2979139-G	0.4952	4E-14		1.0272213		Affymetrix [11880941] (imputed)	N
648	chr8	8268312	8268313	rs2979139	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	8p23.1	SGK223, CLDN23	rs2979139-G	0.4952	4E-14		1.0270597		Affymetrix [11880941] (imputed)	N
648	chr8	8268335	8268336	rs73184376	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8p23.1	CTA-398F10.1	rs73184376-A	NR	5E-8		0.0200211	[0.013-0.027] unit increase	Affymetrix [321114] (imputed)	N
648	chr8	8270913	8270914	rs2976944	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8p23.1	CTA-398F10.1	rs2976944-T	NR	8E-11		0.0186195	[0.013-0.024] unit increase	Affymetrix [321114] (imputed)	N
648	chr8	8270913	8270914	rs2976944	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	8p23.1	CTA-398F10.1	rs2976944-T	NR	3E-9		0.0171017	[0.011-0.023] unit increase	Affymetrix [321169] (imputed)	N
648	chr8	8270913	8270914	rs2976944	32386560	Ramirez J	2020-04-29	Am J Hum Genet	Common Genetic Variants Modulate the Electrocardiographic Tpeak-to-Tend Interval.	TPE interval (resting)	71,338 European ancestry individuals	NA	8p23.1	PRAG1	rs2976944-T	0.488	4E-8		0.028	[0.018-0.038] unit decrease	Affymetrix [~ 9000000] (imputed)	N
648	chr8	8273954	8273955	rs17607190	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	8p23.1	NR	rs17607190-T	NR	1E-12		0.0246	[0.018-0.031] unit increase	Affymetrix [9000000] (imputed)	N
648	chr8	8279406	8279407	rs2979239	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8p23.1	CTA-398F10.1	rs2979239-A	NR	4E-8		0.0162081	[0.01-0.022] unit decrease	Affymetrix [321114] (imputed)	N
648	chr8	8279461	8279462	rs2976940	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium VLDL	115,082 European ancestry individuals	NA	8p23.1		rs2976940-T	0.450318	9E-9		0.0237066	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
648	chr8	8279461	8279462	rs2976940	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 3)	4,680 European ancestry individuals	3,566 European ancestry individuals	8p23.1		rs2976940-T	0.429638009	9E-9				Illumina [7417619] (imputed)	N
648	chr8	8281141	8281142	rs2921097	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small VLDL	115,082 European ancestry individuals	NA	8p23.1		rs2921097-T	0.47877	4E-8		0.0224617	[0.014-0.03] unit increase	NR [11722792] (imputed)	N
648	chr8	8281141	8281142	rs2921097	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in VLDL	115,082 European ancestry individuals	NA	8p23.1		rs2921097-T	0.47877	9E-11		0.0263318	[0.018-0.034] unit increase	NR [11722792] (imputed)	N
648	chr8	8281141	8281142	rs2921097	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in VLDL	115,082 European ancestry individuals	NA	8p23.1		rs2921097-T	0.47877	4E-8		0.0224393	[0.014-0.03] unit increase	NR [11722792] (imputed)	N
648	chr8	8281141	8281142	rs2921097	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Creatinine levels	110,051 European ancestry individuals	NA	8p23.1		rs2921097-T	0.478826	4E-10		0.0223365	[0.015-0.029] unit increase	NR [11722792] (imputed)	N
648	chr8	8281141	8281142	rs2921097	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small VLDL particles	115,082 European ancestry individuals	NA	8p23.1		rs2921097-T	0.47877	3E-8		0.0225799	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
648	chr8	8281141	8281142	rs2921097	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	CTA-398F10.1	rs2921097-T	NR	5E-10		0.0194842	[0.013-0.026] unit increase	Affymetrix [323858] (imputed)	N
648	chr8	8281141	8281142	rs2921097	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	CTA-398F10.1	rs2921097-T	NR	3E-11		0.0208157	[0.015-0.027] unit increase	Affymetrix [127266] (imputed)	N
648	chr8	8284398	8284399	rs9657555	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	8p23.1	NR	rs9657555-A	NR	7E-12		0.0252	[0.018-0.032] unit increase	Affymetrix [9000000] (imputed)	N
648	chr8	8284649	8284650	rs2921096	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large VLDL	115,082 European ancestry individuals	NA	8p23.1		rs2921096-T	0.454917	1E-8		0.0234025	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
648	chr8	8284649	8284650	rs2921096	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large VLDL	115,082 European ancestry individuals	NA	8p23.1		rs2921096-T	0.454917	4E-9		0.0242165	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
648	chr8	8286115	8286116	rs2945858	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	ENSG00000253505	rs2945858-T	NR	8E-11		0.011256	[0.0079-0.0147] unit decrease	Affymetrix [18485882] (imputed)	N
648	chr8	8287095	8287096	rs2976935	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	8p23.1	CTA-398F10.1	rs2976935-T	NR	1E-8		0.0177143	[0.012-0.024] unit increase	Affymetrix [321169] (imputed)	N
648	chr8	8289898	8289899	rs2976842	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	ENSG00000253505	rs2976842-T	NR	3E-11		0.011571	[0.0082-0.015] unit decrease	Affymetrix [18485882] (imputed)	N
648	chr8	8291297	8291298	rs2976843	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	CTA-398F10.1	rs2976843-T	NR	2E-8		0.0181293	[0.012-0.024] unit decrease	Affymetrix [321114] (imputed)	N
648	chr8	8298284	8298285	rs13253290	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	8p23.1	Intergenic	rs13253290-A	0.8625	1E-8	(MTAG)	0.0149	[0.0098-0.02] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
648	chr8	8298856	8298857	rs2979204	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	ENSG00000254153	rs2979204-T	NR	5E-12		0.011973	[0.0086-0.0154] unit decrease	Affymetrix [18485882] (imputed)	N
648	chr8	8298856	8298857	rs2979204	29559929	Amare AT	2018-03-06	Front Psychiatry	Association of the Polygenic Scores for Personality Traits and Response to Selective Serotonin Reuptake Inhibitors in Patients with Major Depressive Disorder.	Remission after SSRI treatment in MDD or neuroticism	865 individuals with SSRI response data, 170,911 individuals with personality trait data	NA	8p23.1	PRAG1	rs2979204-T	NR	8E-11				NR [NR] (imputed)	N
648	chr8	8301787	8301788	rs2976854	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8p23.1	CTA-398F10.2	rs2976854-C	NR	4E-10		0.0187912	[0.013-0.025] unit increase	Affymetrix [321114] (imputed)	N
648	chr8	8304501	8304502	rs2921077	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Non-melanoma skin cancer	5,912 European ancestry cases, 181,740 European ancestry controls		8p23.1	NR	rs2921077-G	NR	7E-6		1.0887696	[1.05-1.13]	Affymetrix [5734850] (imputed)	N
648	chr8	8307642	8307643	rs2921073	28892059	Chang D	2017-09-11	Nat Genet	A meta-analysis of genome-wide association studies identifies 17 new Parkinson's disease risk loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	5,851 European ancestry cases, 5,866 European ancestry controls	8p23.1	NR	rs2921073-C	NR	1E-7		1.0615711	[1.04-1.08]	Illumina [11933700] (imputed)	N
648	chr8	8307665	8307666	rs2979160	32201043	Smeland OB	2020-02-08	Biol Psychiatry	Genome-wide Association Analysis of Parkinson's Disease and Schizophrenia Reveals Shared Genetic Architecture and Identifies Novel Risk Loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	NA	8p23.1	SGK223	rs2979160-A		3E-6				Illumina [NR]	N
648	chr8	8308043	8308044	rs2921071	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	8p23.1	NR	rs2921071-C	0.473961	2E-13		0.01527	[0.011-0.019] SD unit decrease	Affymetrix, Illumina [50036608] (imputed)	N
648	chr8	8308043	8308044	rs2921071	32581359	Saevarsdottir S	2020-06-24	Nature	FLT3 stop mutation increases FLT3 ligand level and risk of autoimmune thyroid disease.	Autoimmune thyroid disease	30,234 European ancestry cases, 724,172 European ancestry controls	NA	8p23.1	NR	rs2921071-A	0.52	3E-21		1.0869565	[NR]	Affymetrix, Illumina [42900000] (imputed)	N
648	chr8	8308043	8308044	rs2921071	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count (basophil)	171,846 European ancestry individuals	NA	8p23.1	intergenic	rs2921071-C	0.4723	1E-10		0.02283891	[0.016-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
648	chr8	8309007	8309008	rs2979162	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	ENSG00000254153	rs2979162-T	NR	5E-12		0.011979	[0.0086-0.0154] unit decrease	Affymetrix [18485882] (imputed)	N
648	chr8	8309096	8309097	rs2980757	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	8p23.1	CTA-398F10.2	rs2980757-T	NR	6E-10		0.0183737	[0.013-0.024] unit decrease	Affymetrix [321169] (imputed)	N
648	chr8	8310507	8310508	rs2979172	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	8p23.1		rs2979172-G	0.523137	4E-19		0.0346675	[0.027-0.042] unit decrease	NR [11722792] (imputed)	N
648	chr8	8311320	8311321	rs2976868	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8p23.1	CTA-398F10.2	rs2976868-C	NR	6E-12		0.0202681	[0.015-0.026] unit decrease	Affymetrix [321114] (imputed)	N
648	chr8	8316636	8316637	rs2921064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	8p23.1		rs2921064-C	0.537828	8E-10		0.0254715	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
648	chr8	8316636	8316637	rs2921064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	8p23.1		rs2921064-C	0.537828	7E-22		0.0373107	[0.03-0.045] unit decrease	NR [11722792] (imputed)	N
648	chr8	8316636	8316637	rs2921064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	8p23.1		rs2921064-C	0.537828	1E-16		0.0343732	[0.026-0.043] unit increase	NR [11722792] (imputed)	N
648	chr8	8316636	8316637	rs2921064	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	8p23.1	intergenic	rs2921064-?	NR	5E-25		0.0271	[0.022-0.032] unit decrease	Affymetrix [5701386] (imputed)	N
648	chr8	8317816	8317817	rs2921060	34753499	Hanscombe KB	2021-11-09	Genome Med	The genetic case for cardiorespiratory fitness as a clinical vital sign and the routine prescription of physical activity in healthcare.	Cardiorespiratory fitness slope	70,783 European ancestry individuals	NA	8p23.1		rs2921060-A	0.55	2E-8		0.006	[0.004-0.008] unit increase	Affymetrix [8918919] (imputed)	N
648	chr8	8317816	8317817	rs2921060	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	8p23.1	SGK223	rs2921060-A	0.5403	6E-12	(EA)	0.0025	[0.0017-0.0033] unit decrease	Affymetrix [NR] (imputed)	N
648	chr8	8317886	8317887	rs2921059	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	8p23.1		rs2921059-?	NR	4E-82		0.0401012	[0.036-0.044] unit decrease	Affymetrix [20259828] (imputed)	N
648	chr8	8318666	8318667	rs2921057	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	8p23.1		rs2921057-?	NR	8E-82		0.0394276	[0.035-0.044] unit decrease	Affymetrix [20259828] (imputed)	N
648	chr8	8319962	8319963	rs2921053	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small VLDL	115,082 European ancestry individuals	NA	8p23.1		rs2921053-G	0.548833	2E-17		0.0339709	[0.026-0.042] unit increase	NR [11722792] (imputed)	N
648	chr8	8319962	8319963	rs2921053	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small LDL	115,082 European ancestry individuals	NA	8p23.1		rs2921053-G	0.548833	2E-11		0.0269651	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
648	chr8	8319962	8319963	rs2921053	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium VLDL	115,082 European ancestry individuals	NA	8p23.1		rs2921053-G	0.548833	6E-16		0.0326194	[0.025-0.041] unit increase	NR [11722792] (imputed)	N
648	chr8	8319962	8319963	rs2921053	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total triglycerides levels	115,082 European ancestry individuals	NA	8p23.1		rs2921053-G	0.548833	5E-15		0.0312932	[0.023-0.039] unit increase	NR [11722792] (imputed)	N
648	chr8	8319962	8319963	rs2921053	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large VLDL	115,082 European ancestry individuals	NA	8p23.1		rs2921053-G	0.548833	2E-14		0.0305487	[0.023-0.038] unit increase	NR [11722792] (imputed)	N
648	chr8	8319962	8319963	rs2921053	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large VLDL	115,082 European ancestry individuals	NA	8p23.1		rs2921053-G	0.548833	2E-14		0.0305847	[0.023-0.038] unit increase	NR [11722792] (imputed)	N
648	chr8	8319962	8319963	rs2921053	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large VLDL	115,082 European ancestry individuals	NA	8p23.1		rs2921053-G	0.548833	5E-13		0.0288805	[0.021-0.037] unit increase	NR [11722792] (imputed)	N
648	chr8	8319962	8319963	rs2921053	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large VLDL	115,082 European ancestry individuals	NA	8p23.1		rs2921053-G	0.548833	8E-14		0.0298643	[0.022-0.038] unit increase	NR [11722792] (imputed)	N
648	chr8	8319962	8319963	rs2921053	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	8p23.1		rs2921053-G	0.548833	3E-12		0.0281189	[0.02-0.036] unit increase	NR [11722792] (imputed)	N
648	chr8	8319962	8319963	rs2921053	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	8p23.1		rs2921053-G	0.548833	8E-13		0.028727	[0.021-0.037] unit increase	NR [11722792] (imputed)	N
648	chr8	8319962	8319963	rs2921053	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large VLDL particles	115,082 European ancestry individuals	NA	8p23.1		rs2921053-G	0.548833	2E-14		0.0304557	[0.023-0.038] unit increase	NR [11722792] (imputed)	N
648	chr8	8319962	8319963	rs2921053	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large VLDL particles	115,082 European ancestry individuals	NA	8p23.1		rs2921053-G	0.548833	3E-14		0.0303611	[0.023-0.038] unit increase	NR [11722792] (imputed)	N
648	chr8	8319962	8319963	rs2921053	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	8p23.1		rs2921053-G	0.548833	2E-10		0.0258471	[0.018-0.034] unit increase	NR [11722792] (imputed)	N
648	chr8	8319962	8319963	rs2921053	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	8p23.1		rs2921053-G	0.548833	6E-11		0.0266057	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
648	chr8	8319962	8319963	rs2921053	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	8p23.1		rs2921053-C	NR	1E-26		0.0965	[0.079-0.114] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
648	chr8	8319962	8319963	rs2921053	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hypothyroidism	30,155 European ancestry cases, 379,986 European ancestry controls, 1,114 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	8p23.1		rs2921053-C	NR	3E-9		0.0599	[0.04-0.08] unit decrease	Affymetrix, Illumina [25801083] (imputed)	N
648	chr8	8319962	8319963	rs2921053	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	8p23.1	CTA-398F10.2	rs2921053-C	0.451729	4E-24		0.09299282	[0.075-0.111] unit decrease	Affymetrix [7288503] (imputed)	N
648	chr8	8319962	8319963	rs2921053	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	8p23.1		rs2921053-?	NR	5E-14				NR [~ 8900000] (imputed)	N
648	chr8	8320103	8320104	rs2921051	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	8p23.1	NR	rs2921051-A	0.457743	8E-10		0.0412829	[0.028-0.055] unit increase	Affymetrix [17914406] (imputed)	N
648	chr8	8320103	8320104	rs2921051	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	8p23.1	SGK223	rs2921051-A	0.51	2E-10		0.0022	[0.0016-0.0028] unit increase	Affymetrix [NR] (imputed)	N
648	chr8	8320290	8320291	rs2980769	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	8p23.1		rs2980769-A	0.41	1E-38		12.99	z score increase	Affymetrix [9061022] (imputed)	N
648	chr8	8320290	8320291	rs2980769	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (min-P)	26,502 European ancestry individuals	NA	8p23.1	CNTN2, TMEM81, RBBP5, DSTYK, TMCC2, NUAK2	rs2980769-?		6E-10				NR [7428630] (imputed)	N
648	chr8	8320290	8320291	rs2980769	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (min-P)	26,502 European ancestry individuals	NA	8p23.1	NCKAP5	rs2980769-?		2E-9				NR [7428630] (imputed)	N
648	chr8	8321278	8321279	rs4840966	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	CTA-398F10.2	rs4840966-T	NR	2E-8		0.0217322	[0.014-0.029] unit increase	Affymetrix [323858] (imputed)	N
648	chr8	8321278	8321279	rs4840966	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	CTA-398F10.2	rs4840966-T	NR	5E-9		0.0227595	[0.015-0.03] unit increase	Affymetrix [127266] (imputed)	N
648	chr8	8323087	8323088	rs2979181	32769997	Zhou W	2020-08-07	Nat Commun	GWAS of thyroid stimulating hormone highlights pleiotropic effects and inverse association with thyroid cancer.	Thyroid stimulating hormone levels	119,715 European ancestry individuals	NA	8p23.1	PRAG1, CLDN23	rs2979181-T	0.495724029985714	4E-11		0.0359	[0.025-0.047] SD decrease	Illumina [22400000] (imputed)	N
648	chr8	8326469	8326470	rs2921042	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	8p23.1		rs2921042-?	NR	2E-24		0.0236619	[0.019-0.028] unit decrease	Affymetrix [20259828] (imputed)	N
648	chr8	8327978	8327979	rs2921041	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	8p23.1	Intergenic	rs2921041-A	0.7397	7E-14		0.0166	[0.012-0.021] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
648	chr8	8330298	8330299	rs200658291	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	CTA-398F10.2	rs200658291-T	NR	3E-8		0.0204548	[0.013-0.028] unit decrease	Affymetrix [321114] (imputed)	N
648	chr8	8338146	8338147	rs2979192	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8p23.1	CTA-398F10.2	rs2979192-T	NR	1E-11		0.0198798	[0.014-0.026] unit decrease	Affymetrix [321114] (imputed)	N
648	chr8	8338146	8338147	rs2979192	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	CTA-398F10.2	rs2979192-T	NR	3E-11		0.0211932	[0.015-0.027] unit decrease	Affymetrix [321114] (imputed)	N
648	chr8	8338146	8338147	rs2979192	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	8p23.1	CTA-398F10.2	rs2979192-T	NR	3E-9		0.0189271	[0.013-0.025] unit decrease	Affymetrix [323858] (imputed)	N
648	chr8	8342505	8342506	rs2921027	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	CTA-398F10.2	rs2921027-A	NR	7E-9		0.0226887	[0.015-0.03] unit decrease	Affymetrix [321114] (imputed)	N
648	chr8	8342505	8342506	rs2921027	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	8p23.1	CTA-398F10.2	rs2921027-A	NR	3E-8		0.0216576	[0.014-0.029] unit decrease	Affymetrix [323858] (imputed)	N
648	chr8	8345773	8345774	rs2976908	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	CTA-398F10.2	rs2976908-G	NR	8E-11		0.0207724	[0.015-0.027] unit decrease	Affymetrix [323858] (imputed)	N
648	chr8	8345773	8345774	rs2976908	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	CTA-398F10.2	rs2976908-G	NR	5E-12		0.0220801	[0.016-0.028] unit decrease	Affymetrix [127266] (imputed)	N
648	chr8	8349756	8349757	rs6997361	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	8p23.1	NR	rs6997361-T	NR	1E-20		0.0256	[0.02-0.031] unit decrease	Affymetrix [9000000] (imputed)	N
648	chr8	8349756	8349757	rs6997361	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	8p23.1	NR	rs6997361-T	NR	2E-12		0.0193	[0.014-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
648	chr8	8349756	8349757	rs6997361	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	ENSG00000254153	rs6997361-C	NR	1E-10		0.011436	[0.0079-0.0149] unit increase	Affymetrix [18485882] (imputed)	N
648	chr8	8351545	8351546	rs4562328	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	ENSG00000254153	rs4562328-C	NR	5E-9		0.010268	[0.0068-0.0137] unit decrease	Affymetrix [18485882] (imputed)	N
648	chr8	8358088	8358089	rs35118033	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	8p23.1		rs35118033-?	NR	6E-41		0.0303695	[0.026-0.035] unit decrease	Affymetrix [20259828] (imputed)	N
648	chr8	8358155	8358156	rs2980752	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	ENSG00000254153	rs2980752-C	NR	1E-11		0.011979	[0.0085-0.0154] unit decrease	Affymetrix [18485882] (imputed)	N
648	chr8	8358155	8358156	rs2980752	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	8p23.1		rs2980752-?	NR	3E-50		0.03258	[0.028-0.037] unit decrease	Affymetrix [20259828] (imputed)	N
648	chr8	8358308	8358308	rs771064798	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8p23.1	CTA-398F10.2	rs771064798-T	NR	1E-9		0.0204873	[0.014-0.027] unit increase	Affymetrix [321114] (imputed)	N
648	chr8	8358308	8358308	rs771064798	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	CTA-398F10.2	rs771064798-T	NR	3E-8		0.0203232	[0.013-0.027] unit increase	Affymetrix [321114] (imputed)	N
648	chr8	8358308	8358308	rs771064798	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	8p23.1	CTA-398F10.2	rs771064798-T	NR	4E-8		0.0184971	[0.012-0.025] unit increase	Affymetrix [321169] (imputed)	N
648	chr8	8358666	8358667	rs2921094	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	CTA-398F10.2	rs2921094-G	NR	1E-9		0.0203656	[0.014-0.027] unit decrease	Affymetrix [323858] (imputed)	N
648	chr8	8358666	8358667	rs2921094	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	CTA-398F10.2	rs2921094-G	NR	4E-10		0.0210477	[0.014-0.028] unit decrease	Affymetrix [127266] (imputed)	N
648	chr8	8358666	8358667	rs2921094	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8p23.1	CTA-398F10.2	rs2921094-G	NR	5E-9		0.017848	[0.012-0.024] unit decrease	Affymetrix [321114] (imputed)	N
648	chr8	8358666	8358667	rs2921094	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	8p23.1	CTA-398F10.2	rs2921094-G	NR	4E-9		0.0179884	[0.012-0.024] unit decrease	Affymetrix [321169] (imputed)	N
648	chr8	8358865	8358866	rs2001827	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	8p23.1	NR	rs2001827-A	NR	5E-10		0.0197	[0.013-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
648	chr8	8361822	8361823	rs35190619	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	CTA-398F10.2	rs35190619-C	NR	8E-9		0.019136	[0.013-0.026] unit increase	Affymetrix [323858] (imputed)	N
648	chr8	8361822	8361823	rs35190619	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	CTA-398F10.2	rs35190619-C	NR	2E-9		0.0198666	[0.013-0.026] unit increase	Affymetrix [127266] (imputed)	N
648	chr8	8361822	8361823	rs35190619	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	CTA-398F10.2	rs35190619-C	NR	5E-8		0.0179034	[0.011-0.024] unit increase	Affymetrix [321114] (imputed)	N
648	chr8	8362709	8362710	rs11783173	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	8p23.1	NR	rs11783173-T	NR	1E-14		0.0252	[0.019-0.032] unit decrease	Affymetrix [9000000] (imputed)	N
648	chr8	8363682	8363683	rs2980755	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large VLDL	115,082 European ancestry individuals	NA	8p23.1		rs2980755-A	0.541966	5E-16		0.0325582	[0.025-0.04] unit increase	NR [11722792] (imputed)	N
648	chr8	8363682	8363683	rs2980755	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	8p23.1		rs2980755-A	0.541966	8E-15		0.0313079	[0.023-0.039] unit increase	NR [11722792] (imputed)	N
648	chr8	8363682	8363683	rs2980755	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in VLDL	115,082 European ancestry individuals	NA	8p23.1		rs2980755-A	0.541966	2E-16		0.0329647	[0.025-0.041] unit increase	NR [11722792] (imputed)	N
648	chr8	8363682	8363683	rs2980755	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	8p23.1		rs2980755-A	0.541966	3E-16		0.0328749	[0.025-0.041] unit increase	NR [11722792] (imputed)	N
648	chr8	8363682	8363683	rs2980755	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	8p23.1		rs2980755-A	0.541966	6E-17		0.0334534	[0.026-0.041] unit increase	NR [11722792] (imputed)	N
648	chr8	8363682	8363683	rs2980755	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	8p23.1		rs2980755-A	0.541966	3E-18		0.035007	[0.027-0.043] unit increase	NR [11722792] (imputed)	N
648	chr8	8363682	8363683	rs2980755	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of chylomicrons and extremely large VLDL particles	115,082 European ancestry individuals	NA	8p23.1		rs2980755-A	0.541966	7E-16		0.0323445	[0.024-0.04] unit increase	NR [11722792] (imputed)	N
648	chr8	8363682	8363683	rs2980755	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	8p23.1		rs2980755-A	0.54197	4E-15		0.0314454	[0.024-0.039] unit decrease	NR [11722792] (imputed)	N
648	chr8	8363682	8363683	rs2980755	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	8p23.1		rs2980755-A	0.541966	3E-15		0.0318478	[0.024-0.04] unit increase	NR [11722792] (imputed)	N
648	chr8	8363682	8363683	rs2980755	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	8p23.1		rs2980755-A	0.54197	6E-13		0.0294506	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
648	chr8	8363682	8363683	rs2980755	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	8p23.1		rs2980755-A	0.541966	1E-16		0.0333704	[0.025-0.041] unit increase	NR [11722792] (imputed)	N
648	chr8	8363682	8363683	rs2980755	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for VLDL particles	115,082 European ancestry individuals	NA	8p23.1		rs2980755-A	0.541966	1E-22		0.0381702	[0.031-0.046] unit increase	NR [11722792] (imputed)	N
648	chr8	8363682	8363683	rs2980755	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	8p23.1		rs2980755-G	NR	1E-10		0.0143	[0.01-0.0186] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
648	chr8	8363682	8363683	rs2980755	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	8p23.1	SGK223	rs2980755-A	0.542263	2E-35		0.0248515	[0.021-0.029] unit increase	Affymetrix [NR] (imputed)	N
648	chr8	8363682	8363683	rs2980755	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	8p23.1	intergenic	rs2980755-A	0.5437	1E-10		0.0209	[0.014-0.027] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
648	chr8	8363682	8363683	rs2980755	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption (light vs heavy) interaction (2df test)	12,758 European ancestry heavy drinkers, 1,326 African American or Afro-Caribbean heavy drinkers, 648 Asian ancestry heavy drinkers, 364 Hispanic or Latin American heavy drinkers, 43,947 European ancestry light drinkers, 8,239 African American or Afro-Caribbean light drinkers, 1,141 Asian ancestry light drinkers, 4,448 Hispanic or Latin American light drinkers	42,078 European ancestry heavy drinkers, 217 African American heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic heavy drinkers, 74,706 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	8p23.1	LOC105379224, SGK223	rs2980755-A	0.55	3E-11	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
648	chr8	8363682	8363683	rs2980755	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Pulse pressure x alcohol consumption (light vs heavy) interaction (2df test)	56,705 European ancestry heavy and light drinkers, 9,725 African American or Afro-Caribbean heavy and light drinkers, 1,789 Asian ancestry heavy and light drinkers, 4,812 Hispanic or Latin American heavy and light drinkers	42,079 European ancestry heavy drinkers, 217 African American heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic heavy drinkers, 74,756 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	8p23.1	LOC105379224, SGK223	rs2980755-A	0.55	1E-10	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
648	chr8	8363896	8363897	rs2921036	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	8p23.1		rs2921036-T	0.491401	1E-11		0.026652	[0.019-0.034] unit decrease	NR [11722792] (imputed)	N
648	chr8	8363896	8363897	rs2921036	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	CTA-398F10.2	rs2921036-T	NR	1E-16		0.026038	[0.02-0.032] unit increase	Affymetrix [323858] (imputed)	N
648	chr8	8363896	8363897	rs2921036	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	CTA-398F10.2	rs2921036-T	NR	2E-18		0.0274284	[0.021-0.034] unit increase	Affymetrix [127266] (imputed)	N
648	chr8	8363896	8363897	rs2921036	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on highest math class (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	8p23.1		rs2921036-?	NR	5E-11				NR [NR]	N
648	chr8	8363896	8363897	rs2921036	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on educational attainment (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	8p23.1		rs2921036-?	NR	1E-11				NR [NR]	N
648	chr8	8363896	8363897	rs2921036	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Neuroticism	274,107 British ancestry individuals	NA	8p23.1	NR	rs2921036-T	0.4898	3E-20		0.01775	[0.014-0.022] unit increase	NR [8968716] (imputed)	N
648	chr8	8363896	8363897	rs2921036	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	ENSG00000254153	rs2921036-T	NR	5E-18		0.015042	[0.012-0.018] unit decrease	Affymetrix [18485882] (imputed)	N
648	chr8	8363896	8363897	rs2921036	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	8p23.1	NR	rs2921036-C	0.509535735305944	7E-15		0.007148126	[0.0053-0.0089] unit decrease	NR [NR]	N
648	chr8	8363896	8363897	rs2921036	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	8p23.1	NR	rs2921036-C	0.509535735305944	3E-32		0.02199825	[0.018-0.026] unit decrease	NR [NR]	N
648	chr8	8363896	8363897	rs2921036	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	8p23.1	NR	rs2921036-T	NR	5E-10		6.229	z score increase	Affymetrix [10847151] (imputed)	N
648	chr8	8363896	8363897	rs2921036	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	8p23.1	CLDN23, ERI1, MFHAS1, SGK223	rs2921036-T	0.48746	3E-31		11.629	z score increase	Illumina [18485882] (imputed)	N
648	chr8	8364923	8364924	rs117374667	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	8p23.1	NR	rs117374667-G	0.0805505510289749	4E-8		0.018779427	[0.012-0.025] unit increase	NR [NR]	N
648	chr8	8365704	8365705	rs2980756	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	CTA-398F10.2	rs2980756-T	NR	1E-8		0.0236833	[0.016-0.032] unit decrease	Affymetrix [323858] (imputed)	N
648	chr8	8365704	8365705	rs2980756	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	CTA-398F10.2	rs2980756-T	NR	7E-9		0.0241568	[0.016-0.032] unit decrease	Affymetrix [127266] (imputed)	N
648	chr8	8366245	8366246	rs2921098	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	ENSG00000253343	rs2921098-G	NR	7E-9		0.010057	[0.0067-0.0135] unit increase	Affymetrix [18485882] (imputed)	N
648	chr8	8373484	8373485	rs10092965	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption interaction (2df test)	63,607 European ancestry drinkers, 10,193 African American or Afro-Caribbean drinkers, 2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,492 European ancestry non-drinkers, 11,223 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,058 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	8p23.1	LOC105379224, SGK223	rs10092965-A	0.54	9E-11	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
648	chr8	8373484	8373485	rs10092965	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption interaction (2df test)	63,607 European ancestry drinkers, 10,193 African American or Afro-Caribbean drinkers, 2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,492 European ancestry non-drinkers, 11,223 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,058 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	8p23.1	LOC105379224, SGK223	rs10092965-A	0.53	2E-12	(EA, Hispanic)			Affymetrix, Illumina [up to 39321347] (imputed)	N
648	chr8	8374181	8374182	rs13438897	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	8p23.1	CLDN23	rs13438897-C	0.818	2E-9		0.0092	[0.0063-0.0121] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
648	chr8	8374245	8374246	rs13439086	30563984	Hawi Z	2018-12-18	Transl Psychiatry	A case-control genome-wide association study of ADHD discovers a novel association with the tenascin R (TNR) gene.	Attention deficit hyperactivity disorder	480 European ancestry cases, 1,208 European ancestry controls	NA	8p23.1	SGK223	rs13439086-C	NR	6E-6		2.162	[1.549-3.018]	Illumina [5407269] (imputed)	N
648	chr8	8374341	8374342	rs4375003	32902719	Hebbar P	2020-09-09	Hum Genet	Genome-wide landscape establishes novel association signals for metabolic traits in the Arab population.	High density lipoprotein cholesterol levels	2,732 Kuwaiti ancestry individuals	NA	8p23.1	INTS10, LPL	rs4375003-?	NR	1E-6		4.892	NR unit decrease	Illumina [up to 1520000] (imputed)	N
648	chr8	8374341	8374342	rs4375003	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	ENSG00000253343	rs4375003-A	NR	6E-9		0.010094	[0.0067-0.0135] unit decrease	Affymetrix [18485882] (imputed)	N
648	chr8	8374373	8374374	rs4639513	30894546	Ivarsdottir EV	2019-03-20	Nat Commun	Sequence variation at ANAPC1 accounts for 24% of the variability in corneal endothelial cell density.	Corneal endothelial cell size variation coefficient	6,125 Icelandic ancestry individuals	NA	8p23.1	NR	rs4639513-A		2E-7		0.113	[NR] unit increase	Illumina [NR]	N
648	chr8	8374743	8374744	rs7008364	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	8p23.1	NR	rs7008364-T	NR	8E-12		0.0213	[0.015-0.027] unit increase	Affymetrix [9000000] (imputed)	N
648	chr8	8374835	8374836	rs12546760	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs autism spectrum disorder (ordinary least squares (OLS))	40,675 schizophrenia cases, 18,381 autism spectrum disorder cases	NA	8p23.1		rs12546760-?	NR	4E-8		0.0165	NR unit increase	NR [4484088] (imputed)	N
648	chr8	8376198	8376199	rs4504641	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	ENSG00000253343	rs4504641-A	NR	7E-9		0.01002	[0.0066-0.0134] unit decrease	Affymetrix [18485882] (imputed)	N
648	chr8	8378101	8378102	rs13270194	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	315,284 European ancestry male individuals	NA	8p23.1	NR	rs13270194-T	0.5021	5E-19		0.0176	[0.014-0.022] unit increase	NR [~ 27400000] (imputed)	N
648	chr8	8378101	8378102	rs13270194	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption interaction (2df test)	63,608 European ancestry drinkers, 10,193 African American or Afro-Caribbean heavy drinkers,  2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,494 European ancestry non-drinkers, 11,224 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,002 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,452 Hispanic drinkers, 43,316 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,945 Asian ancestry non-drinkers, 6,925 Hispanic non-drinkers	8p23.1	LOC105379224, SGK223	rs13270194-T	0.51	2E-20	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
648	chr8	8378991	8378992	rs7837587	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	8p23.1		rs7837587-T	0.510693	4E-17		0.0325494	[0.025-0.04] unit increase	NR [11722792] (imputed)	N
648	chr8	8378991	8378992	rs7837587	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large VLDL	115,082 European ancestry individuals	NA	8p23.1		rs7837587-T	0.510695	1E-16		0.0326545	[0.025-0.04] unit increase	NR [11722792] (imputed)	N
648	chr8	8378991	8378992	rs7837587	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small HDL	115,082 European ancestry individuals	NA	8p23.1		rs7837587-T	0.510695	1E-15		0.031863	[0.024-0.04] unit increase	NR [11722792] (imputed)	N
648	chr8	8378991	8378992	rs7837587	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Monounsaturated fatty acid levels	115,006 European ancestry individuals	NA	8p23.1		rs7837587-T	0.510723	3E-15		0.0322063	[0.024-0.04] unit increase	NR [11722792] (imputed)	N
648	chr8	8379274	8379275	rs28529476	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	ENSG00000253343	rs28529476-T	NR	1E-10		0.011299	[0.0079-0.0147] unit decrease	Affymetrix [18485882] (imputed)	N
648	chr8	8379685	8379685	rs11441591	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large HDL	115,082 European ancestry individuals	NA	8p23.1		rs11441591-A	0.57846	2E-12		0.0274251	[0.02-0.035] unit decrease	NR [11722792] (imputed)	N
648	chr8	8379685	8379685	rs11441591	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	8p23.1		rs11441591-A	0.578453	8E-10		0.0243302	[0.017-0.032] unit decrease	NR [11722792] (imputed)	N
648	chr8	8379685	8379685	rs11441591	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large HDL	115,082 European ancestry individuals	NA	8p23.1		rs11441591-A	0.57846	1E-12		0.0275023	[0.02-0.035] unit decrease	NR [11722792] (imputed)	N
648	chr8	8380470	8380471	rs7827182	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		8p23.1	SGK223	rs7827182-G	0.51076	3E-16		0.0112266	[0.0085-0.0139] unit decrease	Affymetrix [12370749]	N
648	chr8	8381028	8381029	rs56804039	28806749	Leo PJ	2017-08-14	PLoS Genet	Defining the genetic susceptibility to cervical neoplasia-A genome-wide association study.	Cervical cancer	2,866 European ancestry cases, 6,481 European ancestry controls	NA	8p23.1	SGK223, CLDN23	rs56804039-?	NR	4E-6		1.2091899	[NR]	Illumina [10863230] (imputed)	N
648	chr8	8381314	8381315	rs7001963	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8p23.1	CTD-3023L14.3	rs7001963-A	NR	1E-10		0.0212409	[0.015-0.028] unit increase	Affymetrix [321114] (imputed)	N
648	chr8	8381314	8381315	rs7001963	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	8p23.1	CTD-3023L14.3	rs7001963-A	NR	1E-8		0.0189147	[0.012-0.025] unit increase	Affymetrix [321169] (imputed)	N
648	chr8	8382704	8382705	rs7823056	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	CTD-3023L14.3	rs7823056-G	NR	9E-18		0.0265066	[0.02-0.033] unit decrease	Affymetrix [321114] (imputed)	N
648	chr8	8382704	8382705	rs7823056	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	8p23.1	CTD-3023L14.3	rs7823056-G	NR	1E-14		0.0239379	[0.018-0.03] unit decrease	Affymetrix [323858] (imputed)	N
648	chr8	8382704	8382705	rs7823056	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on cognitive performance (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	8p23.1		rs7823056-?	NR	1E-11				NR [NR]	N
648	chr8	8382704	8382705	rs7823056	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption (light vs heavy) interaction (2df test)	12,758 European ancestry heavy drinkers, 1,326 African American or Afro-Caribbean heavy drinkers, 648 Asian ancestry heavy drinkers, 364 Hispanic or Latin American heavy drinkers, 43,947 European ancestry light drinkers, 8,239 African American or Afro-Caribbean light drinkers, 1,141 Asian ancestry light drinkers, 4,448 Hispanic or Latin American light drinkers	42,078 European ancestry heavy drinkers, 217 African American heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic heavy drinkers, 74,706 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	8p23.1	LOC105379224, SGK223	rs7823056-A	0.41	1E-11	(AA, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
648	chr8	8382704	8382705	rs7823056	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Pulse pressure x alcohol consumption (light vs heavy) interaction (2df test)	56,705 European ancestry heavy and light drinkers, 9,725 African American or Afro-Caribbean heavy and light drinkers, 1,789 Asian ancestry heavy and light drinkers, 4,812 Hispanic or Latin American heavy and light drinkers	42,079 European ancestry heavy drinkers, 217 African American heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic heavy drinkers, 74,756 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	8p23.1	LOC105379224, SGK223	rs7823056-A	0.5	3E-11	(AA, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
648	chr8	8382704	8382705	rs7823056	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	8p23.1	PRAG1, MFHAS1	rs7823056-?	NR	8E-22				Affymetrix, Illumina [18800000] (imputed)	N
648	chr8	8382704	8382705	rs7823056	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	8p23.1	PRAG1, MFHAS1	rs7823056-?	NR	3E-21	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
648	chr8	8382704	8382705	rs7823056	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	8p23.1	PRAG1, MFHAS1	rs7823056-?	NR	3E-23				Affymetrix, Illumina [18800000] (imputed)	N
648	chr8	8382704	8382705	rs7823056	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	8p23.1	PRAG1, MFHAS1	rs7823056-?		3E-22	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
648	chr8	8382704	8382705	rs7823056	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	8p23.1	PRAG1, MFHAS1	rs7823056-?	NR	4E-11	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
648	chr8	8382704	8382705	rs7823056	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	8p23.1	PRAG1, MFHAS1	rs7823056-?	NR	2E-11				Affymetrix, Illumina [18800000] (imputed)	N
648	chr8	8382704	8382705	rs7823056	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	8p23.1	PRAG1, MFHAS1	rs7823056-?	NR	1E-11	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
648	chr8	8382704	8382705	rs7823056	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	8p23.1	PRAG1, MFHAS1	rs7823056-?	NR	1E-11				Affymetrix, Illumina [18800000] (imputed)	N
648	chr8	8383139	8383140	rs61296026	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8p23.1	CTD-3023L14.3	rs61296026-G	NR	2E-16		0.0236162	[0.018-0.029] unit decrease	Affymetrix [321114] (imputed)	N
648	chr8	8383139	8383140	rs61296026	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	8p23.1	CTD-3023L14.3	rs61296026-G	NR	6E-15		0.0224259	[0.017-0.028] unit decrease	Affymetrix [321169] (imputed)	N
648	chr8	8384646	8384647	rs6995407	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Pulse pressure x alcohol consumption interaction (2df test)	91,099 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	238,053 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,447 Hispanic ancestry drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic ancestry non-drinkers	8p23.1	LOC105379224, SGK223	rs6995407-C	0.51	2E-16	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
648	chr8	8387094	8387095	rs7826238	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Systolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	8p23.1	intergenic	rs7826238-T	0.474	8E-7	(EA, initial)	0.357	[0.22-0.5] unit increase	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
648	chr8	8387094	8387095	rs7826238	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Systolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	8p23.1	intergenic	rs7826238-T	0.474	3E-15		0.335	[0.25-0.42] unit increase	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
648	chr8	8387902	8387903	rs10109703	33987465	Alfradique-Dunham I	2021-01-28	Neurol Genet	Genome-Wide Association Study Meta-Analysis for Parkinson Disease Motor Subtypes.	Parkinson's disease motor subtype (tremor to postural instability/gait difficulty score ratio)	3,212 European ancestry individuals	NA	8p23.1	SGK223	rs10109703-A	0.64	1E-6		0.13	[0.071-0.189] unit decrease	Illumina [14638245] (imputed)	N
649	chr8	8427093	8427094	rs139737126	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,931 Sub-Saharan African ancestry males	NA	8p23.1		rs139737126-G	0.977111	4E-6		0.0413609	[0.023-0.06] unit decrease	Illumina [13900000] (imputed)	N
649	chr8	8428728	8428729	rs6601711	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	CTD-3023L14.2	rs6601711-A	NR	3E-8		0.0203676	[0.013-0.028] unit decrease	Affymetrix [323858] (imputed)	N
649	chr8	8428728	8428729	rs6601711	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	CTD-3023L14.2	rs6601711-A	NR	2E-8		0.0208544	[0.014-0.028] unit decrease	Affymetrix [127266] (imputed)	N
649	chr8	8433487	8433488	rs4272382	24483146	Li L	2014-02-01	BMC Genomics	Discovery of genetic biomarkers contributing to variation in drug response of cytidine analogues using human lymphoblastoid cell lines.	Response to cytidine analogues (gemcitabine)	60 European ancestry lymphoblastoid cell lines, 54 African American lymphoblastoid cell lines, 60 Han Chinese ancestry lymphoblastoid cell lines	NA	8p23.1	CLDN23	rs4272382-?		2E-6				Affymetrix, Illumina [1348798]	N
649	chr8	8436069	8436070	rs7003528	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	8p23.1	CLDN23	rs7003528-T	0.329	2E-11		0.0085	[0.006-0.011] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
649	chr8	8436589	8436590	rs17618598	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	RN7SL178P	rs17618598-C	NR	1E-9		0.0221825	[0.015-0.029] unit increase	Affymetrix [321114] (imputed)	N
649	chr8	8436589	8436590	rs17618598	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	RN7SL178P	rs17618598-T	NR	4E-8		0.0095212	[0.0061-0.0129] unit increase	Affymetrix [18485882] (imputed)	N
649	chr8	8455642	8455643	rs2948586	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	8p23.1	NR	rs2948586-G	NR	2E-14		0.023	[0.017-0.029] unit increase	Affymetrix [9000000] (imputed)	N
649	chr8	8468231	8468232	rs1522835	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8p23.1	AC087269.2	rs1522835-G	NR	1E-8		0.017654	[0.012-0.024] unit decrease	Affymetrix [321114] (imputed)	N
649	chr8	8471932	8471933	rs79180029	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8p23.1	NR	rs79180029-C	0.02091	1E-8	(ENO1)	1.239	NR unit increase	Illumina [1671387] (imputed)	N
649	chr8	8473159	8473160	rs11784888	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	ENSG00000264445	rs11784888-G	NR	1E-9		0.010574	[0.0072-0.014] unit increase	Affymetrix [18485882] (imputed)	N
649	chr8	8496482	8496483	rs13256345	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	8p23.1	NR	rs13256345-T	NR	1E-14		0.0217	[0.016-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
649	chr8	8498802	8498803	rs870167	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	8p23.1	NR	rs870167-G	NR	2E-8		1.065	[1.04-1.09]	Affymetrix, Illumina [29235255] (imputed)	N
649	chr8	8499515	8499516	rs111703385	25187353	Goldstein JI	2014-09-04	Nat Commun	Clozapine-induced agranulocytosis is associated with rare HLA-DQB1 and HLA-B alleles.	Clozapine-induced agranulocytosis	161 European ancestry cases, 1,196 European ancestry clozapine-treated and untreated controls	NA	8p23.1	intergenic	rs111703385-A	0.0419	6E-7		3.6248	[3.12-4.13]	Illumina [8809853] (imputed)	N
649	chr8	8500723	8500724	rs6601720	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	AC087269.2	rs6601720-C	NR	4E-10		0.0196979	[0.014-0.026] unit decrease	Affymetrix [323858] (imputed)	N
649	chr8	8500723	8500724	rs6601720	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	AC087269.2	rs6601720-C	NR	6E-11		0.0206438	[0.014-0.027] unit decrease	Affymetrix [127266] (imputed)	N
649	chr8	8500723	8500724	rs6601720	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	AC087269.2	rs6601720-C	NR	3E-13		0.0226669	[0.017-0.029] unit decrease	Affymetrix [321114] (imputed)	N
649	chr8	8500723	8500724	rs6601720	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	8p23.1	AC087269.2	rs6601720-C	NR	7E-10		0.0192217	[0.013-0.025] unit decrease	Affymetrix [323858] (imputed)	N
649	chr8	8501229	8501230	rs4841005	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8p23.1	MFHAS1	rs4841005-?	NR	2E-6	(phenylalanine)	0.16529119	[0.097-0.234] unit increase	Affymetrix [at least 2500000] (imputed)	N
649	chr8	8501473	8501474	rs4841006	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	ENSG00000264445	rs4841006-T	NR	7E-14		0.01301	[0.0096-0.0164] unit increase	Affymetrix [18485882] (imputed)	N
649	chr8	8501570	8501571	rs7013881	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	8p23.1	Intergenic	rs7013881-T	0.6643	5E-8	(MTAG)	0.0103	[0.0066-0.014] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
649	chr8	8501570	8501571	rs7013881	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	8p23.1	Intergenic	rs7013881-T	0.6643	5E-11		0.0136	[0.0095-0.0177] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
649	chr8	8503699	8503700	rs61040371	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	NA	8p23.1	CLDN23	rs61040371-T	0.6287	5E-9		0.1836	[0.12-0.25] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
649	chr8	8504125	8504126	rs112164152	29855589	Chernus J	2018-05-31	Sci Rep	GWAS reveals loci associated with velopharyngeal dysfunction.	Velopharyngeal dysfunction	54 Hispanic or Latin American and unknown ancestry cases, 922 Hispanic or Latin American and unknown ancestry controls	NA	8p23.1	NR	rs112164152-?	NR	5E-6		0.10631842	[NR] unit decrease	Illumina [at least 269494] (imputed)	N
649	chr8	8514185	8514186	rs4841009	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	AC087269.2	rs4841009-A	NR	4E-8		0.0187774	[0.012-0.025] unit increase	Affymetrix [323858] (imputed)	N
649	chr8	8514185	8514186	rs4841009	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	AC087269.2	rs4841009-A	NR	5E-9		0.0199933	[0.013-0.027] unit increase	Affymetrix [127266] (imputed)	N
649	chr8	8514185	8514186	rs4841009	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8p23.1	AC087269.2	rs4841009-A	NR	8E-10		0.0191597	[0.013-0.025] unit increase	Affymetrix [321114] (imputed)	N
649	chr8	8514185	8514186	rs4841009	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	8p23.1	AC087269.2	rs4841009-A	NR	1E-8		0.0177756	[0.012-0.024] unit increase	Affymetrix [321169] (imputed)	N
649	chr8	8515364	8515365	rs4398922	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	ENSG00000264445	rs4398922-C	NR	8E-12		0.011858	[0.0085-0.0153] unit increase	Affymetrix [18485882] (imputed)	N
649	chr8	8517918	8517919	rs1522838	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	ENSG00000264445	rs1522838-G	NR	7E-11		0.011364	[0.008-0.0148] unit increase	Affymetrix [18485882] (imputed)	N
649	chr8	8518961	8518962	rs28404324	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	8p23.1	NR	rs28404324-T	NR	4E-9		0.0262	[0.018-0.035] unit increase	Affymetrix [9000000] (imputed)	N
650	chr8	8524360	8524361	rs11997261	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Osteoarthritis of the hip or knee	39,427 European ancestry cases, 378,169 European ancestry controls	NA	8p23.1	NR	rs11997261-T	0.72	5E-10		1.06	[1.04-1.07]	Affymetrix, Illumina [up to 17000000] (imputed)	N
650	chr8	8524473	8524474	rs11992186	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	8p23.1	NR	rs11992186-C	0.495468	2E-9		0.0412195	[0.028-0.055] unit decrease	Affymetrix [17914406] (imputed)	N
650	chr8	8524473	8524474	rs11992186	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	8p23.1	SGK223, CLDN23	rs11992186-G	0.5073	6E-14		1.0274324		Affymetrix [11880941] (imputed)	N
650	chr8	8524473	8524474	rs11992186	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	8p23.1	intergenic	rs11992186-C	0.48898	3E-27		10.818	z score increase	Illumina [18485882] (imputed)	N
650	chr8	8524566	8524567	rs1973776	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	ENSG00000264445	rs1973776-A	NR	2E-12		0.012187	[0.0088-0.0156] unit increase	Affymetrix [18485882] (imputed)	N
650	chr8	8528744	8528745	rs73192442	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	CLDN23	rs73192442-T	NR	9E-10		0.010573	[0.0072-0.014] unit increase	Affymetrix [18485882] (imputed)	N
650	chr8	8534773	8534774	rs11249877	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	8p23.1	NR	rs11249877-C	NR	2E-13		0.0262	[0.019-0.033] unit increase	Affymetrix [9000000] (imputed)	N
650	chr8	8538008	8538009	rs7012395	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	CLDN23	rs7012395-T	NR	8E-11		0.0218479	[0.015-0.028] unit decrease	Affymetrix [321114] (imputed)	N
650	chr8	8538008	8538009	rs7012395	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	CLDN23	rs7012395-T	NR	3E-11		0.011582	[0.0082-0.015] unit increase	Affymetrix [18485882] (imputed)	N
650	chr8	8545624	8545624	rs796362861	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8p23.1	CLDN23	rs796362861-T	NR	1E-9		0.0175822	[0.012-0.023] unit increase	Affymetrix [321114] (imputed)	N
650	chr8	8547312	8547313	rs6989926	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	CLDN23	rs6989926-A	NR	2E-12		0.0218416	[0.016-0.028] unit decrease	Affymetrix [321114] (imputed)	N
650	chr8	8547312	8547313	rs6989926	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	8p23.1	CLDN23	rs6989926-A	NR	5E-9		0.0182036	[0.012-0.024] unit decrease	Affymetrix [323858] (imputed)	N
650	chr8	8548116	8548117	rs7829975	29187730	Ward J	2017-11-30	Transl Psychiatry	Genome-wide analysis in UK Biobank identifies four loci associated with mood instability and genetic correlation with major depressive disorder, anxiety disorder and schizophrenia.	Mood instability	53,525 European ancestry cases, 60,443 European ancestry controls	NA	8p23.1	CLDN23, MFHAS1	rs7829975-A	0.516	2E-9		0.051	[0.034-0.068] unit increase	Affymetrix [8797848] (imputed)	N
650	chr8	8548116	8548117	rs7829975	29187730	Ward J	2017-11-30	Transl Psychiatry	Genome-wide analysis in UK Biobank identifies four loci associated with mood instability and genetic correlation with major depressive disorder, anxiety disorder and schizophrenia.	Mood instability	43,660 European ancestry cases without a psychiatric disorder diagnosis, 60,443 European ancestry controls	NA	8p23.1	CLDN23, MFHAS1	rs7829975-A	0.523	5E-9		0.052	[0.034-0.07] unit increase	Affymetrix [8797848] (imputed)	N
650	chr8	8548876	8548877	rs111714591	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	CLDN23	rs111714591-T	NR	3E-8		0.0197667	[0.013-0.027] unit increase	Affymetrix [127266] (imputed)	N
650	chr8	8549873	8549874	rs1554533	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	CLDN23	rs1554533-A	NR	3E-13		0.012677	[0.0093-0.0161] unit increase	Affymetrix [18485882] (imputed)	N
650	chr8	8550254	8550255	rs11249878	26451028	Hofer E	2015-10-08	Stroke	White Matter Lesion Progression: Genome-Wide Search for Genetic Influences.	White matter lesion progression	1,085 European ancestry elderly cases, 6,688 European ancestry elderly controls	NA	8p23.1	CLDN23	rs11249878-C	0.3	8E-6		1.27	[NR]	Affymetrix, Illumina [up to 2543887] (imputed)	N
650	chr8	8556277	8556278	rs28663303	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	CLDN23	rs28663303-C	NR	2E-8		0.0177195	[0.012-0.024] unit increase	Affymetrix [127266] (imputed)	N
650	chr8	8556277	8556278	rs28663303	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	CLDN23	rs28663303-C	NR	2E-8		0.0175525	[0.011-0.024] unit increase	Affymetrix [321114] (imputed)	N
650	chr8	8560601	8560602	rs2280560	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	8p23.1		rs2280560-T	0.2448	1E-14		0.20008513	[0.15-0.25] mmHg increase	Affymetrix, Illumina [242865] (imputed)	N
650	chr8	8560601	8560602	rs2280560	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	8p23.1		rs2280560-T	0.2448	1E-9		0.10928743	[0.073-0.145] mmHg increase	Affymetrix, Illumina [242866] (imputed)	N
650	chr8	8560601	8560602	rs2280560	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	8p23.1		rs2280560-T	0.2447	4E-8		0.0877685	[0.056-0.12] mmHg increase	Affymetrix, Illumina [242866] (imputed)	N
650	chr8	8571363	8571364	rs1109618	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	CLDN23	rs1109618-A	NR	1E-12		0.012325	[0.0089-0.0157] unit increase	Affymetrix [18485882] (imputed)	N
650	chr8	8573003	8573004	rs544377	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Supramarginal gyrus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	8p23.1	NR	rs544377-?		2E-6				Illumina [4322238] (imputed)	N
650	chr8	8577378	8577379	rs13256369	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	8p23.1	CLDN23	rs13256369-G	0.413	3E-6	(IGFBP-3 )	0.03	[NR] ng/mL increase	Illumina [899892]	N
650	chr8	8577601	8577602	rs13248423	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	ENSG00000254367	rs13248423-C	NR	2E-10		0.011151	[0.0077-0.0146] unit decrease	Affymetrix [18485882] (imputed)	N
650	chr8	8581037	8581038	rs11777719	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	8p23.1	CLDN23	rs11777719-A	0.715936	8E-14		0.011672	[0.0086-0.0147] unit decrease	Affymetrix [12370749]	N
650	chr8	8587570	8587571	rs488904	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	8p23.1	RP11-211C9.1	rs488904-T	NR	2E-8		0.0157605	[0.01-0.021] unit decrease	Affymetrix [321016] (imputed)	N
650	chr8	8589782	8589783	rs11781985	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	8p23.1	CLDN23	rs11781985-T	0.8033	7E-10		0.025	[0.017-0.033] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
650	chr8	8589782	8589783	rs11781985	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	8p23.1	CLDN23	rs11781985-T	0.7812	6E-7		0.023115	[0.014-0.032] mg/dL decrease	Affymetrix, Illumina [8217339] (imputed)	N
650	chr8	8604183	8604184	rs11776845	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	ENSG00000254367	rs11776845-T	NR	1E-8		0.009893	[0.0065-0.0133] unit increase	Affymetrix [18485882] (imputed)	N
650	chr8	8604422	8604423	rs6985207	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	RP11-211C9.1	rs6985207-C	NR	3E-8		0.0172296	[0.011-0.023] unit increase	Affymetrix [321114] (imputed)	N
650	chr8	8605601	8605602	rs4841028	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	8p23.1	MFHAS1	rs4841028-C	0.829	3E-14		0.0119	[0.0088-0.015] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
650	chr8	8605631	8605632	rs4841029	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	8p23.1	NR	rs4841029-A	0.4077	2E-11	(Superior Temporal)	13.034881	[9.21-16.86] unit increase	Affymetrix, Illumina [NR]	N
650	chr8	8606806	8606807	rs73198271	28472463	Mullin BH	2017-05-04	Hum Mol Genet	Genome-wide association study meta-analysis for quantitative ultrasound parameters of bone identifies five novel loci for broadband ultrasound attenuation.	Bone ultrasound measurement (broadband ultrasound attenuation)	1,268 whole genome sequenced European ancestry women, 8,880 European ancestry women, 6,479 European ancestry men	NA	8p23.1	CLDN23, MFHAS1	rs73198271-T	0.26	4E-7	(male)	0.1	[0.061-0.139] unit decrease	Illumina [11973598] (imputed)	N
650	chr8	8606966	8606967	rs568927	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	RP11-211C9.1	rs568927-T	NR	3E-8		0.0189996	[0.012-0.026] unit decrease	Affymetrix [321114] (imputed)	N
650	chr8	8607076	8607077	rs567958	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	ENSG00000254367	rs567958-A	NR	5E-12		0.011967	[0.0086-0.0154] unit increase	Affymetrix [18485882] (imputed)	N
650	chr8	8607849	8607851	rs201133964	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	8p23.1	MFHAS1, ERI1, PPP1R3B	rs201133964-?	NR	1E-9				Affymetrix, Illumina [18800000] (imputed)	N
650	chr8	8607849	8607851	rs201133964	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	8p23.1	MFHAS1, ERI1, PPP1R3B	rs201133964-?	NR	1E-8	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
650	chr8	8607849	8607851	rs201133964	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	8p23.1	MFHAS1, ERI1, PPP1R3B	rs201133964-?	NR	3E-9				Affymetrix, Illumina [18800000] (imputed)	N
650	chr8	8607849	8607851	rs201133964	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	8p23.1	MFHAS1, ERI1, PPP1R3B	rs201133964-?		1E-8	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
650	chr8	8607849	8607851	rs201133964	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	8p23.1	MFHAS1, ERI1, PPP1R3B	rs201133964-?	NR	5E-6				Affymetrix, Illumina [18800000] (imputed)	N
650	chr8	8607849	8607851	rs201133964	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	8p23.1	MFHAS1, ERI1, PPP1R3B	rs201133964-?	NR	1E-6				Affymetrix, Illumina [18800000] (imputed)	N
650	chr8	8609879	8609880	rs17154702	28447399	Jia P	2017-04-26	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of HIV-associated neurocognitive disorder (HAND): A CHARTER group study.	Neurocognitive impairment in HIV-1 infection (continuous)	490 African American individuals, 443 European ancestry individuals, 99 Hispanic individuals, 17 individuals	NA	8p23.1	intergenic	rs17154702-A		3E-6		0.118	unit decrease	Affymetrix [NR]	N
650	chr8	8613386	8613387	rs635594	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	RP11-211C9.1	rs635594-C	NR	5E-9		0.0189286	[0.013-0.025] unit decrease	Affymetrix [127266] (imputed)	N
650	chr8	8613386	8613387	rs635594	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	RP11-211C9.1	rs635594-C	NR	4E-12		0.0221857	[0.016-0.028] unit decrease	Affymetrix [321114] (imputed)	N
650	chr8	8613386	8613387	rs635594	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	8p23.1	RP11-211C9.1	rs635594-C	NR	7E-9		0.0185261	[0.012-0.025] unit decrease	Affymetrix [323858] (imputed)	N
650	chr8	8613386	8613387	rs635594	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	ENSG00000254367	rs635594-C	NR	7E-11		0.011307	[0.0079-0.0147] unit increase	Affymetrix [18485882] (imputed)	N
650	chr8	8617697	8617698	rs150257085	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8p23.1	NR	rs150257085-C	0.01045	8E-9	(PSMB6)	0.07311	NR unit increase	Illumina [1671387] (imputed)	N
650	chr8	8617697	8617698	rs150257085	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8p23.1	NR	rs150257085-C	0.01045	2E-8	(ARG1)	4.01	NR unit increase	Illumina [1671387] (imputed)	N
650	chr8	8622793	8622794	rs34927688	29855589	Chernus J	2018-05-31	Sci Rep	GWAS reveals loci associated with velopharyngeal dysfunction.	Velopharyngeal dysfunction	54 Hispanic or Latin American and unknown ancestry cases, 922 Hispanic or Latin American and unknown ancestry controls	NA	8p23.1	NR	rs34927688-?	NR	8E-7		0.07636229	[NR] unit decrease	Illumina [at least 269494] (imputed)	N
650	chr8	8622876	8622877	rs476845	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	ENSG00000254367	rs476845-A	NR	9E-12		0.011897	[0.0085-0.0153] unit increase	Affymetrix [18485882] (imputed)	N
650	chr8	8630163	8630164	rs537878	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	8p23.1	Intergenic	rs537878-T	0.1845	2E-8	(MTAG)	0.013	[0.0085-0.0175] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
650	chr8	8630163	8630164	rs537878	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	8p23.1	Intergenic	rs537878-C	0.8155	1E-10		0.0162	[0.011-0.021] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
650	chr8	8632319	8632320	rs1814796	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	8p23.1	NR	rs1814796-T	NR	2E-9		0.0211	[0.014-0.028] unit increase	Affymetrix [9000000] (imputed)	N
650	chr8	8633547	8633548	rs609958	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Depression	at least 5,919 European ancestry cases, at least 130,691 European ancestry controls	634,037 European ancestry cases, 1,308,690 European ancestry controls	8p23.1	RP11, 211C9.1	rs609958-T	0.4553	7E-9		0.012986639	[0.0079-0.018] unit decrease	NR [9417325] (imputed)	N
650	chr8	8639574	8639575	rs488566	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	ENSG00000254367	rs488566-A	NR	2E-9		0.010492	[0.0071-0.0139] unit increase	Affymetrix [18485882] (imputed)	N
650	chr8	8640171	8640172	rs693109	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	8p23.1		rs693109-C	0.463662	3E-22		0.0403434	[0.032-0.048] unit increase	NR [11722792] (imputed)	N
650	chr8	8640171	8640172	rs693109	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	8p23.1		rs693109-C	0.463662	2E-20		0.0385381	[0.03-0.047] unit decrease	NR [11722792] (imputed)	N
650	chr8	8641144	8641145	rs2428	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	8p23.1	NR	rs2428-T	0.474327	1E-9		0.0405594	[0.027-0.054] unit increase	Affymetrix [17914406] (imputed)	N
650	chr8	8641144	8641145	rs2428	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	MFHAS1	rs2428-C	NR	1E-18		0.015359	[0.012-0.019] unit decrease	Affymetrix [18485882] (imputed)	N
650	chr8	8643386	8643387	rs10903311	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8p23.1	MFHAS1	rs10903311-G	NR	2E-10		0.0187881	[0.013-0.025] unit increase	Affymetrix [321114] (imputed)	N
650	chr8	8643386	8643387	rs10903311	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	MFHAS1	rs10903311-G	NR	1E-11		0.011752	[0.0083-0.0152] unit decrease	Affymetrix [18485882] (imputed)	N
650	chr8	8645724	8645725	rs2409088	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	MFHAS1	rs2409088-G	NR	3E-8		0.0180387	[0.012-0.024] unit increase	Affymetrix [323858] (imputed)	N
650	chr8	8645724	8645725	rs2409088	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	MFHAS1	rs2409088-G	NR	3E-9		0.0192478	[0.013-0.026] unit increase	Affymetrix [127266] (imputed)	N
650	chr8	8645724	8645725	rs2409088	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	MFHAS1	rs2409088-G	NR	6E-10		0.0198538	[0.014-0.026] unit increase	Affymetrix [321114] (imputed)	N
650	chr8	8645724	8645725	rs2409088	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	8p23.1	MFHAS1	rs2409088-G	NR	2E-9		0.0176574	[0.012-0.023] unit increase	Affymetrix [321169] (imputed)	N
650	chr8	8646245	8646246	rs12682352	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	8p23.1		rs12682352-C	0.45	2E-52		15.25	z score increase	Affymetrix [9061022] (imputed)	N
650	chr8	8646245	8646246	rs12682352	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fish- and plant-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	8p23.1	PRAG1, CLDN23, MFHAS1, ERI1, PPP1R3B, TNKS, MSRA, RP1L1, C8orf74, SOX7, PINX1, XKR6, MTMR9, SLC35G5, FAM167A, BLK, GATA4, C8orf49, FDFT1, CTSB, DEFB136, DEFB135, DEFB134, DEFB130	rs12682352-?	NR	2E-12		0.0172081	[0.012-0.022] unit decrease	Affymetrix [25921788] (imputed)	N
650	chr8	8646245	8646246	rs12682352	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	8p23.1	NR	rs12682352-C	0.47697	1E-24		0.05752	[0.047-0.069] unit decrease	Illumina [18485882] (imputed)	N
650	chr8	8646245	8646246	rs12682352	27067015	Smith DJ	2016-04-12	Mol Psychiatry	Genome-wide analysis of over 106 000 individuals identifies 9 neuroticism-associated loci.	Neuroticism	91,370 European ancestry individuals, 15,346 individuals	NA	8p23.1	Intergenic	rs12682352-T	0.525	2E-15		0.115	[0.088-0.142] unit increase	Affymetrix [7207648] (imputed)	N
651	chr8	8652503	8652504	rs11985640	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	8p23.1	NR	rs11985640-T	NR	3E-11		0.0198	[0.014-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
651	chr8	8652503	8652504	rs11985640	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	8p23.1	NR	rs11985640-T	NR	2E-9		0.0178	[0.012-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
651	chr8	8652888	8652889	rs7832968	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	8p23.1	NR	rs7832968-A	0.467930906653034	5E-31		0.02162454	[0.018-0.025] unit decrease	NR [NR]	N
651	chr8	8654056	8654057	rs2409091	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	8p23.1	MFHAS1	rs2409091-G	0.525198	1E-66		0.00402452	[0.0036-0.0045] unit decrease	Affymetrix [13995440] (imputed)	N
651	chr8	8661026	8661027	rs34602481	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	8p23.1		rs34602481-C	NR	2E-27		0.025	[0.02-0.03] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
651	chr8	8661680	8661681	rs12544992	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	8p23.1	MFHAS1	rs12544992-G	0.47	1E-23		10.0	z-score increase	Affymetrix [4314223] (imputed)	N
651	chr8	8665801	8665802	rs9644776	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on self-rated math ability (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	8p23.1		rs9644776-?	NR	8E-10				NR [NR]	N
651	chr8	8665801	8665802	rs9644776	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Cooked vegetable consumption	335,576 European ancestry individuals	NA	8p23.1	MFHAS1	rs9644776-?	NR	3E-8		0.0136109	[0.0088-0.0184] unit decrease	Affymetrix [25921788] (imputed)	N
651	chr8	8670735	8670736	rs59046059	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	8p23.1	MFHAS1	rs59046059-A	NR	1E-9		0.0173555	[0.012-0.023] unit decrease	Affymetrix [321169] (imputed)	N
651	chr8	8671961	8671962	rs11784052	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	8p23.1	MFHAS1	rs11784052-T	0.4636	4E-19		0.0027	[0.0019-0.0035] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
651	chr8	8684952	8684953	rs1533059	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	8p23.1	MFHAS1	rs1533059-A	0.5142	4E-18		0.0025	[0.0019-0.0031] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
651	chr8	8685189	8685190	rs1533058	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta maximum area	31,908 individuals	NA	8p23.1		rs1533058-A	0.534897	2E-10		0.0472228	[0.032-0.062] decrease	Affymetrix [NR]	N
651	chr8	8685853	8685854	rs1039916	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	8p23.1	intergenic	rs1039916-A	0.51625	6E-30		11.371	z score increase	Illumina [18485882] (imputed)	N
651	chr8	8686679	8686680	rs2409095	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	8p23.1	MFHAS1	rs2409095-A	0.7514	4E-8		0.012336701	[0.0079-0.0167] unit increase	Illumina [9339358] (imputed)	N
651	chr8	8687053	8687054	rs3789849	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	8p23.1		rs3789849-G	0.571836	1E-18		0.0350013	[0.027-0.043] unit increase	NR [11722792] (imputed)	N
651	chr8	8687053	8687054	rs3789849	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	8p23.1		rs3789849-G	0.571973	6E-16		0.0328922	[0.025-0.041] unit increase	NR [11722792] (imputed)	N
651	chr8	8687053	8687054	rs3789849	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	8p23.1		rs3789849-G	0.571836	5E-21		0.0380847	[0.03-0.046] unit increase	NR [11722792] (imputed)	N
651	chr8	8687053	8687054	rs3789849	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	8p23.1		rs3789849-G	0.571836	1E-15		0.0323618	[0.024-0.04] unit increase	NR [11722792] (imputed)	N
651	chr8	8687053	8687054	rs3789849	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	8p23.1		rs3789849-G	0.571836	4E-21		0.0373651	[0.03-0.045] unit increase	NR [11722792] (imputed)	N
651	chr8	8687053	8687054	rs3789849	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium HDL	115,082 European ancestry individuals	NA	8p23.1		rs3789849-G	0.571836	7E-15		0.0320335	[0.024-0.04] unit increase	NR [11722792] (imputed)	N
651	chr8	8687053	8687054	rs3789849	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in HDL	115,082 European ancestry individuals	NA	8p23.1		rs3789849-G	0.571836	2E-13		0.0300606	[0.022-0.038] unit increase	NR [11722792] (imputed)	N
651	chr8	8687053	8687054	rs3789849	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to monounsaturated fatty acids	115,006 European ancestry individuals	NA	8p23.1		rs3789849-G	0.571855	6E-14		0.0301258	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
651	chr8	8687053	8687054	rs3789849	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of monounsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	8p23.1		rs3789849-G	0.571855	9E-18		0.0344942	[0.027-0.042] unit increase	NR [11722792] (imputed)	N
651	chr8	8687053	8687054	rs3789849	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	8p23.1		rs3789849-G	0.571836	5E-18		0.034513	[0.027-0.042] unit decrease	NR [11722792] (imputed)	N
651	chr8	8687053	8687054	rs3789849	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	8p23.1		rs3789849-G	0.571836	8E-17		0.0335667	[0.026-0.041] unit decrease	NR [11722792] (imputed)	N
651	chr8	8687053	8687054	rs3789849	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	8p23.1		rs3789849-G	0.571836	2E-12		0.0292405	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
651	chr8	8687053	8687054	rs3789849	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	8p23.1		rs3789849-G	0.571973	5E-15		0.0317923	[0.024-0.04] unit decrease	NR [11722792] (imputed)	N
651	chr8	8687053	8687054	rs3789849	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	8p23.1		rs3789849-G	0.571836	2E-19		0.0358827	[0.028-0.044] unit decrease	NR [11722792] (imputed)	N
651	chr8	8687053	8687054	rs3789849	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	8p23.1		rs3789849-G	0.571836	2E-19		0.0360162	[0.028-0.044] unit decrease	NR [11722792] (imputed)	N
651	chr8	8687053	8687054	rs3789849	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	8p23.1		rs3789849-G	0.571836	2E-17		0.0338985	[0.026-0.042] unit decrease	NR [11722792] (imputed)	N
651	chr8	8687053	8687054	rs3789849	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	8p23.1		rs3789849-G	0.571836	2E-8		0.0232756	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
651	chr8	8687053	8687054	rs3789849	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	8p23.1		rs3789849-G	0.571973	2E-16		0.0329324	[0.025-0.041] unit decrease	NR [11722792] (imputed)	N
651	chr8	8687053	8687054	rs3789849	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	8p23.1		rs3789849-G	0.571836	7E-19		0.0367309	[0.029-0.045] unit decrease	NR [11722792] (imputed)	N
651	chr8	8687053	8687054	rs3789849	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	8p23.1		rs3789849-G	0.571836	6E-22		0.0377548	[0.03-0.045] unit decrease	NR [11722792] (imputed)	N
651	chr8	8687053	8687054	rs3789849	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	8p23.1		rs3789849-G	0.571973	6E-17		0.0335654	[0.026-0.041] unit decrease	NR [11722792] (imputed)	N
651	chr8	8687053	8687054	rs3789849	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	8p23.1		rs3789849-G	0.571836	2E-21		0.0387649	[0.031-0.047] unit decrease	NR [11722792] (imputed)	N
651	chr8	8687053	8687054	rs3789849	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	8p23.1		rs3789849-G	0.571836	1E-21		0.0377116	[0.03-0.045] unit decrease	NR [11722792] (imputed)	N
651	chr8	8687053	8687054	rs3789849	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8p23.1	MFHAS1	rs3789849-C	NR	1E-11		0.0195772	[0.014-0.025] unit decrease	Affymetrix [321114] (imputed)	N
651	chr8	8687053	8687054	rs3789849	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	8p23.1	MFHAS1	rs3789849-C	NR	1E-9		0.0174267	[0.012-0.023] unit decrease	Affymetrix [321016] (imputed)	N
651	chr8	8687053	8687054	rs3789849	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	8p23.1	MFHAS1	rs3789849-G	0.571904	8E-25		0.00407028	[0.0033-0.0048] unit decrease	Affymetrix [13995440] (imputed)	N
651	chr8	8690392	8690393	rs11995244	32152699	Nudel R	2020-03-09	Hum Genet	A large population-based investigation into the genetics of susceptibility to gastrointestinal infections and the link between gastrointestinal infections and mental illness.	Gastrointestinal infection	7,197 Danish ancestry cases, 37,062 Danish ancestry controls	NA	8p23.1	NR	rs11995244-T	NR	7E-6		1.3719	[1.23-1.51]	Illumina [11600722] (imputed)	N
651	chr8	8690910	8690911	rs4840367	27089180	Day FR	2016-04-18	Nat Genet	Physical and neurobehavioral determinants of reproductive onset and success.	Age at first sexual intercourse	59,357 British ancestry males, 66,310 British ancestry females	NA	8p23.1	MFHAS1	rs4840367-A	0.40758700000000003	2E-10		0.0250412	[0.017-0.033] unit increase	Affymetrix [641018] (imputed)	N
651	chr8	8697657	8697658	rs9329170	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	8p23.1	MFHAS1	rs9329170-C	0.86	4E-10		1.1	[1.07-1.13]	Affymetrix, Illumina [6224355] (imputed)	N
651	chr8	8699756	8699757	rs7820146	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8p23.1	MFHAS1	rs7820146-T	0.554373	6E-14	(-38 ms)	0.0424214	[0.031-0.054] unit increase	Affymetrix [10000000] (imputed)	N
651	chr8	8699756	8699757	rs7820146	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8p23.1	MFHAS1	rs7820146-T	0.554373	5E-17	(-36 ms)	0.0473058	[0.036-0.058] unit increase	Affymetrix [10000000] (imputed)	N
651	chr8	8706208	8706209	rs11249896	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	MFHAS1	rs11249896-C	NR	4E-8		0.0176727	[0.011-0.024] unit decrease	Affymetrix [323858] (imputed)	N
651	chr8	8706208	8706209	rs11249896	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	MFHAS1	rs11249896-C	NR	4E-9		0.0189482	[0.013-0.025] unit decrease	Affymetrix [127266] (imputed)	N
651	chr8	8706331	8706332	rs408459	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	MFHAS1	rs408459-C	NR	1E-10		0.020125	[0.014-0.026] unit decrease	Affymetrix [321114] (imputed)	N
651	chr8	8706331	8706332	rs408459	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	8p23.1	MFHAS1	rs408459-C	NR	4E-8		0.0171918	[0.011-0.023] unit decrease	Affymetrix [323858] (imputed)	N
651	chr8	8707196	8707197	rs1877119	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	MFHAS1	rs1877119-G	NR	7E-13		0.0225933	[0.016-0.029] unit decrease	Affymetrix [321114] (imputed)	N
651	chr8	8708973	8708974	rs3925830	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	MFHAS1	rs3925830-C	NR	4E-11		0.011517	[0.0081-0.0149] unit decrease	Affymetrix [18485882] (imputed)	N
651	chr8	8711497	8711498	rs73190080	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	8p23.1	NR	rs73190080-T	0.130781861212772	2E-8		0.0076165167	[0.0049-0.0103] unit increase	NR [NR]	N
651	chr8	8717006	8717007	rs332034	18846501	Sonuga-Barke EJ	2008-10-07	Am J Med Genet B Neuropsychiatr Genet	Does parental expressed emotion moderate genetic effects in ADHD? An exploration using a genome wide association scan.	Conduct disorder (maternal expressed emotions interaction)	909 European ancestry trios	NA	8p23.1	MFHAS1	rs332034-A	0.85	6E-6	(maternal warmth)	1.05	[NR] unit increase	Perlegen [429901]	N
651	chr8	8718849	8718850	rs1039917	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	8p23.1	MFHAS1	rs1039917-A	NR	7E-10		0.0197779	[0.013-0.026] unit decrease	Affymetrix [323858] (imputed)	N
651	chr8	8718849	8718850	rs1039917	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	8p23.1	MFHAS1	rs1039917-?	NR	3E-7		1.09	[1.05-1.15]	Illumina [at least 5000000] (imputed)	N
651	chr8	8721472	8721473	rs4382480	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	8p23.1	NR	rs4382480-G	0.5386	2E-13		0.0306	[0.022-0.039] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
651	chr8	8722377	8722378	rs10108954	22210626	Mead S	2011-12-30	Hum Mol Genet	Genome-wide association study in multiple human prion diseases suggests genetic risk factors additional to PRNP.	Prion diseases	1,281 European ancestry cases, 6,015 European ancestry controls, 290 Papua New Guinean ancestry cases, 286 Papua New Guinean ancestry controls	NA	8p23.1	NR	rs10108954-?	NR	7E-6		1.7359	[NR]	Illumina [NR] (imputed)	N
651	chr8	8722526	8722527	rs56367294	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	MFHAS1	rs56367294-A	NR	2E-10		0.0215109	[0.015-0.028] unit decrease	Affymetrix [323858] (imputed)	N
651	chr8	8722526	8722527	rs56367294	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	MFHAS1	rs56367294-A	NR	2E-11		0.0226167	[0.016-0.029] unit decrease	Affymetrix [127266] (imputed)	N
651	chr8	8722674	8722675	rs332037	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	8p23.1	MFHAS1	rs332037-T	NR	4E-8		0.0172118	[0.011-0.023] unit decrease	Affymetrix [323858] (imputed)	N
651	chr8	8723650	8723651	rs332039	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8p23.1	MFHAS1	rs332039-G	NR	6E-10		0.0177816	[0.012-0.023] unit decrease	Affymetrix [321114] (imputed)	N
651	chr8	8724275	8724276	rs3827806	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	MFHAS1	rs3827806-T	NR	4E-11		0.0206831	[0.015-0.027] unit decrease	Affymetrix [321114] (imputed)	N
651	chr8	8726803	8726804	rs1567398	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	MFHAS1	rs1567398-G	NR	1E-13		0.012993	[0.0096-0.0164] unit decrease	Affymetrix [18485882] (imputed)	N
651	chr8	8729760	8729761	rs907183	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls	NA	8p23.1	MFHAS1	rs907183-C	0.458738	1E-8		0.046217404	[0.03-0.062] unit increase	Affymetrix [7288503] (imputed)	N
651	chr8	8730487	8730488	rs332040	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	MFHAS1	rs332040-A	NR	4E-11		0.0208844	[0.015-0.027] unit decrease	Affymetrix [323858] (imputed)	N
651	chr8	8730487	8730488	rs332040	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	MFHAS1	rs332040-A	NR	2E-12		0.0221342	[0.016-0.028] unit decrease	Affymetrix [127266] (imputed)	N
651	chr8	8730487	8730488	rs332040	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fish- and plant-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	8p23.1	PRAG1, MFHAS1, ERI1, MSRA, RP1L1, C8orf74, SOX7, PINX1, XKR6, MTMR9, SLC35G5, C8orf12, FAM167A, BLK, GATA4, DEFB136, DEFB135, DEFB134, DEFB130	rs332040-?	NR	1E-10	(female)	0.0213486	[0.015-0.028] unit decrease	Affymetrix [25921788] (imputed)	N
651	chr8	8730487	8730488	rs332040	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	8p23.1	MFHAS1	rs332040-A	0.456548	2E-12		0.042916536	[0.031-0.055] unit increase	Affymetrix [7288503] (imputed)	N
651	chr8	8736884	8736885	rs34599909	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	MFHAS1	rs34599909-G	NR	1E-8		0.0098743	[0.0065-0.0133] unit decrease	Affymetrix [18485882] (imputed)	N
651	chr8	8737463	8737464	rs409997	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	8p23.1	Intergenic	rs409997-T	0.3892	3E-14		0.0152	[0.011-0.019] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
651	chr8	8757627	8757628	rs96621	28502801	Law MH	2017-05-11	J Invest Dermatol	Genome-Wide Association Shows that Pigmentation Genes Play a Role in Skin Aging.	Skin aging (microtopography measurement)	5,087 individuals	NA	8p23.1	MFHAS1	rs96621-T		8E-6		0.067	[NR] unit decrease	Illumina [at least 233546] (imputed)	N
651	chr8	8757685	8757686	rs751065	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	8p23.1		rs751065-?	NR	6E-12				NR [~ 8900000] (imputed)	N
651	chr8	8758257	8758258	rs1077950	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	8p23.1	NR	rs1077950-A	NR	9E-10		0.0161	[0.011-0.021] unit increase	Affymetrix [9000000] (imputed)	N
651	chr8	8770511	8770512	rs427370	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	RNU6-682P	rs427370-T	NR	1E-12		0.0224707	[0.016-0.029] unit decrease	Affymetrix [323858] (imputed)	N
651	chr8	8770511	8770512	rs427370	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	RNU6-682P	rs427370-T	NR	2E-13		0.0232165	[0.017-0.029] unit decrease	Affymetrix [127266] (imputed)	N
651	chr8	8770511	8770512	rs427370	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	RNU6-682P	rs427370-T	NR	4E-8		0.0172413	[0.011-0.023] unit decrease	Affymetrix [321114] (imputed)	N
651	chr8	8770511	8770512	rs427370	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	RNU6-682P	rs427370-C	NR	2E-13		0.012847	[0.0094-0.0163] unit decrease	Affymetrix [18485882] (imputed)	N
651	chr8	8770511	8770512	rs427370	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Non-melanoma skin cancer	5,912 European ancestry cases, 181,740 European ancestry controls		8p23.1	NR	rs427370-C	NR	7E-6		1.0892879	[1.05-1.13]	Affymetrix [5734850] (imputed)	N
651	chr8	8771153	8771154	rs366178	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	8p23.1		rs366178-A	0.2871	1E-16		0.1939294	[0.15-0.24] mmHg increase	Affymetrix, Illumina [242865] (imputed)	N
651	chr8	8771153	8771154	rs366178	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	8p23.1		rs366178-A	0.287	2E-8		0.09759404	[0.064-0.132] mmHg increase	Affymetrix, Illumina [242866] (imputed)	N
651	chr8	8771153	8771154	rs366178	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Hypertension	810,865 European ancestry individuals, 21,077 African American individuals, 33,689 South Asian ancestry individuals, 4,586 Hispanic individuals	354,096 European ancestry individuals, 63,282 African American individuals, 4,792 East Asian ancestry individuals, 22,802 Hispanic individuals, 2,695 Native American ancestry individuals	8p23.1		rs366178-A	0.2807	3E-8		5.56983	z score increase	Affymetrix, Illumina [246710] (imputed)	N
651	chr8	8771153	8771154	rs366178	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	8p23.1		rs366178-A	0.2869	3E-11		0.09915179	[0.069-0.129] mmHg increase	Affymetrix, Illumina [242866] (imputed)	N
651	chr8	8771601	8771602	rs17643342	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	RNU6-682P	rs17643342-C	NR	3E-8		0.0300265	[0.019-0.041] unit decrease	Affymetrix [127266] (imputed)	N
651	chr8	8772944	8772945	rs406123	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	ENSG00000270966	rs406123-T	NR	3E-9		0.010409	[0.007-0.0138] unit decrease	Affymetrix [18485882] (imputed)	N
651	chr8	8780075	8780076	rs11776911	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	8p23.1	NR	rs11776911-A	0.223490481127237	1E-9		0.013565886	[0.0092-0.0179] unit increase	NR [NR]	N
651	chr8	8781566	8781567	rs36059156	32747698	Matoba N	2020-08-03	Transl Psychiatry	Common genetic risk variants identified in the SPARK cohort support DDHD2 as a candidate risk gene for autism.	Autism spectrum disorder	22,916 European ancestry cases, 32,504 European ancestry controls	NA	8p23.1	NR	rs36059156-G	0.696869	8E-6		1.0638298	[1.04-1.1]	Illumina [up to 8992756] (imputed)	N
652	chr8	8783505	8783506	rs878504	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8p23.1	RP11-62H7.3	rs878504-G	NR	2E-8		0.0174102	[0.011-0.023] unit decrease	Affymetrix [321114] (imputed)	N
652	chr8	8783505	8783506	rs878504	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	RP11-62H7.3	rs878504-G	NR	4E-8		0.0184823	[0.012-0.025] unit decrease	Affymetrix [321114] (imputed)	N
652	chr8	8783505	8783506	rs878504	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	ENSG00000270966	rs878504-A	NR	2E-9		0.010512	[0.0071-0.0139] unit decrease	Affymetrix [18485882] (imputed)	N
652	chr8	8789961	8789962	rs10098531	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	RP11-62H7.3	rs10098531-C	NR	8E-10		0.0198117	[0.014-0.026] unit increase	Affymetrix [323858] (imputed)	N
652	chr8	8789961	8789962	rs10098531	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	RP11-62H7.3	rs10098531-C	NR	4E-11		0.0212244	[0.015-0.028] unit increase	Affymetrix [127266] (imputed)	N
652	chr8	8790058	8790059	rs448231	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	RP11-62H7.3	rs448231-A	NR	3E-9		0.0187329	[0.013-0.025] unit decrease	Affymetrix [323858] (imputed)	N
652	chr8	8790058	8790059	rs448231	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	RP11-62H7.3	rs448231-A	NR	1E-10		0.0203198	[0.014-0.027] unit decrease	Affymetrix [127266] (imputed)	N
652	chr8	8791143	8791144	rs4841071	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8p23.1	RP11-62H7.3	rs4841071-A	NR	2E-8		0.0162847	[0.011-0.022] unit decrease	Affymetrix [321114] (imputed)	N
652	chr8	8791143	8791144	rs4841071	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	RP11-62H7.3	rs4841071-A	NR	2E-8		0.0174161	[0.011-0.024] unit decrease	Affymetrix [321114] (imputed)	N
652	chr8	8791252	8791253	rs4841072	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	8p23.1	NR	rs4841072-A	0.570764	8E-10		0.0414849	[0.028-0.055] unit decrease	Affymetrix [17914406] (imputed)	N
652	chr8	8792425	8792426	rs6983150	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	ENSG00000270966	rs6983150-A	NR	3E-10		0.010939	[0.0075-0.0144] unit increase	Affymetrix [18485882] (imputed)	N
652	chr8	8792781	8792782	rs7001187	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	8p23.1		rs7001187-A	NR	2E-11		0.016	[0.011-0.021] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
652	chr8	8792864	8792865	rs36056437	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	8p23.1	NR	rs36056437-G	0.459602	6E-17		0.015423	[0.012-0.019] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
652	chr8	8799975	8799976	rs7843024	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8p23.1	NR	rs7843024-A	0.432034	2E-16				Affymetrix, Illumina [24588908] (imputed)	N
652	chr8	8801691	8801692	rs7837026	30894546	Ivarsdottir EV	2019-03-20	Nat Commun	Sequence variation at ANAPC1 accounts for 24% of the variability in corneal endothelial cell density.	Corneal endothelial cell size variation coefficient	6,125 Icelandic ancestry individuals	NA	8p23.1	NR	rs7837026-C		7E-7		0.097	[NR] unit decrease	Illumina [NR]	N
652	chr8	8802100	8802101	rs4840376	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8p23.1	NR	rs4840376-G	0.437455	1E-12				Affymetrix, Illumina [23467995] (imputed)	N
652	chr8	8802100	8802101	rs4840376	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	ENSG00000270966	rs4840376-T	NR	3E-12		0.012155	[0.0087-0.0156] unit increase	Affymetrix [18485882] (imputed)	N
652	chr8	8805804	8805805	rs78029111	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	8p23.1	NR	rs78029111-A	NR	3E-9		0.0385	[0.026-0.051] unit decrease	Affymetrix [9000000] (imputed)	N
652	chr8	8807277	8807278	rs140109562	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 15, philtrum width)	2,187 European ancestry individuals	NA	8p23.1	NR	rs140109562-G	0.007107	3E-6		0.8405	[0.49-1.19] unit decrease	Illumina [10677593] (imputed)	N
652	chr8	8809392	8809393	rs17701091	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	RP11-62H7.2	rs17701091-G	NR	3E-8		0.0312582	[0.02-0.042] unit decrease	Affymetrix [323858] (imputed)	N
652	chr8	8809392	8809393	rs17701091	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	RP11-62H7.2	rs17701091-G	NR	2E-8		0.0316418	[0.021-0.043] unit decrease	Affymetrix [127266] (imputed)	N
652	chr8	8811563	8811564	rs13281377	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	RP11-62H7.2	rs13281377-T	NR	2E-10		0.0202882	[0.014-0.027] unit decrease	Affymetrix [321114] (imputed)	N
652	chr8	8816748	8816749	rs4841074	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	RP11-62H7.2	rs4841074-A	NR	2E-8		0.0180865	[0.012-0.024] unit decrease	Affymetrix [127266] (imputed)	N
652	chr8	8820968	8820969	rs6994163	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	8p23.1	RP11-62H7.2	rs6994163-A	NR	4E-8		0.0162892	[0.01-0.022] unit decrease	Affymetrix [321169] (imputed)	N
652	chr8	8821636	8821637	rs13259143	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8p23.1	RP11-62H7.2	rs13259143-G	NR	7E-9		0.017209	[0.011-0.023] unit decrease	Affymetrix [321114] (imputed)	N
652	chr8	8826171	8826172	rs7004160	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8p23.1	RP11-62H7.2	rs7004160-A	NR	3E-8		0.0162641	[0.011-0.022] unit increase	Affymetrix [321114] (imputed)	N
652	chr8	8829980	8829981	rs28602525	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	RP11-62H7.2	rs28602525-T	NR	3E-8		0.0242176	[0.016-0.033] unit decrease	Affymetrix [127266] (imputed)	N
652	chr8	8836602	8836603	rs1025395	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	8p23.1	NA	rs1025395-C	0.4411	2E-20		0.0159	[0.013-0.019] unit increase	NR [~ 27400000] (imputed)	N
652	chr8	8851880	8851881	rs2953802	31888951	Schlauch KA	2019-12-30	G3 (Bethesda)	A Comprehensive Genome-Wide and Phenome-Wide Examination of BMI and Obesity in a Northern Nevadan Cohort.	Obesity (extreme)	984 cases, 2,012 controls	NA	8p23.1	Intergenic	rs2953802-A	0.42	1E-6		1.318	[1.21-1.43]	Illumina [500508]	N
652	chr8	8853269	8853270	rs1964356	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	8p23.1	intergenic	rs1964356-T	0.3923	5E-13		0.02619069	[0.019-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
652	chr8	8855031	8855032	rs10106565	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8p23.1	ERI1	rs10106565-C	NR	4E-10		0.017982	[0.012-0.024] unit decrease	Affymetrix [321114] (imputed)	N
652	chr8	8855031	8855032	rs10106565	34016946	Wu LS	2021-05-20	Transl Psychiatry	Genome-wide association study of early-onset bipolar I disorder in the Han Taiwanese population.	Bipolar disorder (early vs late onset)	516 Han Taiwanese ancestry cases, 790 Han Taiwanese ancestry controls	153 Han Taiwanese ancestry cases, 320 Han Taiwanese ancestry controls	8p23.1	MFHAS1, ERI1	rs10106565-?	NR	1E-7		2.31	[1.68-3.16] unit increase	Illumina [4750978] (imputed)	N
652	chr8	8855031	8855032	rs10106565	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	ERI1	rs10106565-C	NR	9E-9		0.010051	[0.0066-0.0135] unit increase	Affymetrix [18485882] (imputed)	N
652	chr8	8860893	8860894	rs2288671	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	8p23.1		rs2288671-C	NR	1E-15		0.0169	[0.013-0.021] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
652	chr8	8860893	8860894	rs2288671	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	8p23.1		rs2288671-C	NR	5E-17		0.0177	[0.014-0.022] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
652	chr8	8862520	8862521	rs6987558	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	8p23.1	ERI1	rs6987558-C	0.449122	2E-16		0.01855	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
652	chr8	8862520	8862521	rs6987558	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	8p23.1	ERI1	rs6987558-C	0.449121	3E-17		0.018842863	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
652	chr8	8862520	8862521	rs6987558	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8p23.1	NR	rs6987558-C	0.495853	1E-26				Affymetrix, Illumina [24246363] (imputed)	N
652	chr8	8862520	8862521	rs6987558	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	8p23.1	NR	rs6987558-C	0.448766	6E-27		0.019742	[0.016-0.023] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
652	chr8	8862520	8862521	rs6987558	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8p23.1	NR	rs6987558-C	0.500456	1E-25				Affymetrix, Illumina [20825802] (imputed)	N
652	chr8	8862520	8862521	rs6987558	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	8p23.1	NR	rs6987558-C	0.449504	2E-25		0.020307	[0.016-0.024] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
652	chr8	8862520	8862521	rs6987558	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	8p23.1		rs6987558-?	NR	4E-18				NR [~ 8900000] (imputed)	N
652	chr8	8863058	8863059	rs6993244	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	8p23.1	ERI1	rs6993244-G	0.4534	1E-11		0.02422854	[0.017-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
652	chr8	8867410	8867411	rs2915251	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8p23.1	NR	rs2915251-C	0.49014	1E-12				Affymetrix, Illumina [19905671] (imputed)	N
652	chr8	8871709	8871710	rs2979256	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	8p23.1	ERI1	rs2979256-T	0.449539	2E-10		0.014707037	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
652	chr8	8871709	8871710	rs2979256	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	8p23.1	ERI1	rs2979256-T	0.4476	9E-14		1.0279		Affymetrix [11880941] (imputed)	N
652	chr8	8883612	8883613	rs189051215	34827661	Emmert DB	2021-11-09	Biomolecules	Genetic and Metabolic Determinants of Atrial Fibrillation in a General Population Sample: The CHRIS Study.	Atrial fibrillation	110 European ancestry cases, 10,399 European ancestry controls	NA	8p23.1		rs189051215-?	NR	3E-7				Illumina [19057004] (imputed)	N
652	chr8	8886182	8886183	rs13272451	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	8p23.1	ERI1	rs13272451-T	0.439302	4E-14		0.020579346	[0.015-0.026] unit increase	Affymetrix [93095623] (imputed)	N
652	chr8	8886182	8886183	rs13272451	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8p23.1	NR	rs13272451-G	0.564956	2E-62				Affymetrix, Illumina [22063850] (imputed)	N
652	chr8	8886182	8886183	rs13272451	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	8p23.1	NR	rs13272451-G	0.561109	6E-65		0.032295	[0.029-0.036] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
652	chr8	8890097	8890098	rs1045529	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	8p23.1	ERI1	rs1045529-T	NR	2E-12		0.0220252	[0.016-0.028] unit decrease	Affymetrix [323858] (imputed)	N
652	chr8	8890097	8890098	rs1045529	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Myopia	106,086 European ancestry cases, 85,757 European ancestry controls	NA	8p23.1	intergenic	rs1045529-?	NR	7E-6				Illumina [13762925] (imputed)	N
652	chr8	8890097	8890098	rs1045529	23049088	Meng W	2012-10-09	Invest Ophthalmol Vis Sci	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		8p23.1	intergenic	rs1045529-?	.528	3E-6			[NR]	Affymetrix, Illumina [152234]	N
652	chr8	8890813	8890814	rs7853	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	ERI1	rs7853-G	NR	3E-13		0.0229881	[0.017-0.029] unit decrease	Affymetrix [323858] (imputed)	N
652	chr8	8890813	8890814	rs7853	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	ERI1	rs7853-G	NR	2E-14		0.0241902	[0.018-0.03] unit decrease	Affymetrix [127266] (imputed)	N
652	chr8	8891375	8891376	rs34251783	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	ERI1	rs34251783-C	NR	6E-12		0.0213424	[0.015-0.027] unit increase	Affymetrix [321114] (imputed)	N
652	chr8	8899814	8899815	rs4841087	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	ERI1	rs4841087-A	NR	4E-10		0.0193775	[0.013-0.025] unit increase	Affymetrix [321114] (imputed)	N
652	chr8	8901139	8901140	rs2979269	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	8p23.1	ERI1	rs2979269-A	NR	1E-9		0.0189577	[0.013-0.025] unit increase	Affymetrix [323858] (imputed)	N
652	chr8	8902669	8902670	rs4537305	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls	NA	8p23.1	ERI1	rs4537305-G	0.469306	1E-14		0.060717795	[0.045-0.076] unit increase	Affymetrix [7288503] (imputed)	N
652	chr8	8904861	8904862	rs12114954	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 2)	4,680 European ancestry individuals	3,566 European ancestry individuals	8p23.1		rs12114954-G	0.450376606	1E-11				Illumina [7417619] (imputed)	N
652	chr8	8907949	8907950	rs2044387	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	8p23.1	PPP1R3B	rs2044387-A	0.424969	9E-6	(females)	0.01351	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
652	chr8	8907949	8907950	rs2044387	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	8p23.1	PPP1R3B	rs2044387-A	0.424969	6E-13		0.01746	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
652	chr8	8907949	8907950	rs2044387	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	8p23.1	PPP1R3B	rs2044387-A	0.424969	2E-7	(males)	0.009903	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
652	chr8	8907949	8907950	rs2044387	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	8p23.1	PPP1R3B	rs2044387-A	0.424969	2E-16	(females)	0.02432	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
652	chr8	8907950	8907951	rs6996374	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	ERI1	rs6996374-T	NR	2E-8		0.0191445	[0.013-0.026] unit increase	Affymetrix [321114] (imputed)	N
652	chr8	8908302	8908303	rs4841090	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	ERI1	rs4841090-A	NR	1E-10		0.0213235	[0.015-0.028] unit decrease	Affymetrix [323858] (imputed)	N
652	chr8	8908302	8908303	rs4841090	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	ERI1	rs4841090-A	NR	9E-12		0.0226225	[0.016-0.029] unit decrease	Affymetrix [127266] (imputed)	N
652	chr8	8908302	8908303	rs4841090	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	ERI1	rs4841090-A	NR	2E-15		0.0260916	[0.02-0.033] unit decrease	Affymetrix [321114] (imputed)	N
652	chr8	8908302	8908303	rs4841090	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	8p23.1	ERI1	rs4841090-A	NR	2E-13		0.0241317	[0.018-0.031] unit decrease	Affymetrix [323858] (imputed)	N
652	chr8	8908595	8908596	rs17702602	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	8p23.1	NR	rs17702602-T	0.444906438415238	1E-16		0.0076646293	[0.0059-0.0095] unit increase	NR [NR]	N
653	chr8	8913101	8913102	rs34293316	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	U3	rs34293316-T	NR	1E-9		0.010567	[0.0072-0.014] unit increase	Affymetrix [18485882] (imputed)	N
653	chr8	8914158	8914158	rs34646090	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8p23.1	ERI1	rs34646090-AG	NR	8E-12		0.0196306	[0.014-0.025] unit decrease	Affymetrix [321114] (imputed)	N
653	chr8	8914158	8914158	rs34646090	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	8p23.1	ERI1	rs34646090-AG	NR	7E-11		0.0187489	[0.013-0.024] unit decrease	Affymetrix [321169] (imputed)	N
653	chr8	8914756	8914757	rs2953805	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	8p23.1	NR	rs2953805-?		8E-9	(Inferior fronto-occipital fasciculus)			NR [8955960] (imputed)	N
653	chr8	8914756	8914757	rs2953805	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	8p23.1	CLDN23, ERI1, MFHAS1, PPP1R3B	rs2953805-T	0.53061	2E-29		11.245	z score increase	Illumina [18485882] (imputed)	N
653	chr8	8914756	8914757	rs2953805	26835600	Hu Y	2016-02-02	Nat Commun	GWAS of 89,283 individuals identifies genetic variants associated with self-reporting of being a morning person.	Morning vs. evening chronotype	38,937 European ancestry morning chronotype individuals, 50,346 European ancestry evening chronotype individuals	NA	8p23.1	NR	rs2953805-?	NR	8E-6				Illumina [7427422] (imputed)	N
653	chr8	8914811	8914812	rs2921378	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	8p23.1	NR	rs2921378-G	0.463797103773801	1E-27		0.020232957	[0.017-0.024] unit decrease	NR [NR]	N
653	chr8	8919135	8919136	rs3021416	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	U3	rs3021416-G	NR	1E-13		0.012997	[0.0096-0.0164] unit decrease	Affymetrix [18485882] (imputed)	N
653	chr8	8919675	8919676	rs2979253	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	ERI1	rs2979253-T	NR	4E-14		0.0235703	[0.017-0.03] unit decrease	Affymetrix [321114] (imputed)	N
653	chr8	8919675	8919676	rs2979253	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	8p23.1	NR	rs2979253-T	0.454026	8E-11		0.0433795	[0.03-0.057] unit increase	Affymetrix [17914406] (imputed)	N
653	chr8	8928797	8928798	rs6601282	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	ERI1	rs6601282-T	NR	3E-11		0.0210727	[0.015-0.027] unit increase	Affymetrix [323858] (imputed)	N
653	chr8	8928797	8928798	rs6601282	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	ERI1	rs6601282-T	NR	2E-12		0.0224066	[0.016-0.029] unit increase	Affymetrix [127266] (imputed)	N
653	chr8	8929129	8929130	rs7846644	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	8p23.1	ERI1	rs7846644-C	NR	2E-9		0.0187206	[0.013-0.025] unit increase	Affymetrix [323858] (imputed)	N
653	chr8	8930037	8930038	rs2028806	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	8p23.1	NR	rs2028806-A	NR	2E-17		0.0223	[0.017-0.027] unit increase	Affymetrix [9000000] (imputed)	N
653	chr8	8931305	8931306	rs74442448	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	8p23.1	NR	rs74442448-T	NR	1E-10		0.0252	[0.018-0.033] unit increase	Affymetrix [9000000] (imputed)	N
653	chr8	8936100	8936101	rs17155176	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	ERI1	rs17155176-C	NR	5E-8		0.0202804	[0.013-0.028] unit increase	Affymetrix [127266] (imputed)	N
653	chr8	8939063	8939064	rs75133981	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	8p23.1	NR	rs75133981-C	NR	2E-9		0.0257	[0.017-0.034] unit decrease	Affymetrix [9000000] (imputed)	N
653	chr8	8946162	8946163	rs4841097	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	8p23.1	ERI1	rs4841097-A	0.777484	6E-73		0.05820641	[0.052-0.065] unit decrease	Affymetrix [93095623] (imputed)	N
653	chr8	8946162	8946163	rs4841097	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	8p23.1	ERI1	rs4841097-A	0.7763	4E-41		0.05903836	[0.05-0.068] unit decrease	Affymetrix [~ 2500000] (imputed)	N
653	chr8	8948978	8948979	rs10081437	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	ERI1	rs10081437-C	NR	7E-11		0.020276	[0.014-0.026] unit increase	Affymetrix [321114] (imputed)	N
653	chr8	8948978	8948979	rs10081437	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	RNU7-55P	rs10081437-T	NR	4E-9		0.010288	[0.0069-0.0137] unit increase	Affymetrix [18485882] (imputed)	N
653	chr8	8959670	8959671	rs28649568	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	ERI1	rs28649568-G	NR	4E-9		0.0185056	[0.012-0.025] unit increase	Affymetrix [323858] (imputed)	N
653	chr8	8959670	8959671	rs28649568	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	ERI1	rs28649568-G	NR	7E-10		0.0193609	[0.013-0.026] unit increase	Affymetrix [127266] (imputed)	N
653	chr8	8961989	8961990	rs17155227	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	8p23.1	NR	rs17155227-T	NR	3E-14		0.0256	[0.019-0.032] unit decrease	Affymetrix [9000000] (imputed)	N
653	chr8	8966605	8966606	rs17155242	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	8p23.1	Intergenic	rs17155242-A	0.7044	3E-13		0.0156	[0.011-0.02] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
653	chr8	8969610	8969611	rs11784654	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	ERI1	rs11784654-A	NR	1E-8		0.0179203	[0.012-0.024] unit increase	Affymetrix [323858] (imputed)	N
653	chr8	8969610	8969611	rs11784654	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	ERI1	rs11784654-A	NR	2E-9		0.0188188	[0.013-0.025] unit increase	Affymetrix [127266] (imputed)	N
653	chr8	8970761	8970762	rs7830804	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	PPP1R3B	rs7830804-G	NR	2E-12		0.012264	[0.0088-0.0157] unit increase	Affymetrix [18485882] (imputed)	N
653	chr8	8974337	8974338	rs4841103	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	ERI1	rs4841103-C	NR	5E-12		0.0222261	[0.016-0.029] unit decrease	Affymetrix [323858] (imputed)	N
653	chr8	8974337	8974338	rs4841103	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	ERI1	rs4841103-C	NR	3E-13		0.0234583	[0.017-0.03] unit decrease	Affymetrix [127266] (imputed)	N
653	chr8	8974672	8974673	rs56135405	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	ERI1	rs56135405-G	NR	1E-10		0.0238961	[0.017-0.031] unit decrease	Affymetrix [323858] (imputed)	N
653	chr8	8974672	8974673	rs56135405	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	ERI1	rs56135405-G	NR	1E-11		0.0251543	[0.018-0.032] unit decrease	Affymetrix [127266] (imputed)	N
653	chr8	8974672	8974673	rs56135405	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	ERI1	rs56135405-G	NR	2E-11		0.0244688	[0.017-0.032] unit decrease	Affymetrix [321114] (imputed)	N
653	chr8	8974672	8974673	rs56135405	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	8p23.1	ERI1	rs56135405-G	NR	4E-10		0.0229661	[0.016-0.03] unit decrease	Affymetrix [323858] (imputed)	N
653	chr8	8974672	8974673	rs56135405	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	8p23.1	NR	rs56135405-G	NR	2E-22		0.028	[0.022-0.034] unit increase	Affymetrix [9000000] (imputed)	N
653	chr8	8974672	8974673	rs56135405	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	8p23.1	NR	rs56135405-G	NR	8E-10		0.0177	[0.012-0.023] unit increase	Affymetrix [9000000] (imputed)	N
653	chr8	8974672	8974673	rs56135405	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	PPP1R3B	rs56135405-A	NR	2E-9		0.010301	[0.0069-0.0137] unit decrease	Affymetrix [18485882] (imputed)	N
653	chr8	8975037	8975038	rs1816893	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	ERI1	rs1816893-A	NR	3E-13		0.0232989	[0.017-0.03] unit decrease	Affymetrix [321114] (imputed)	N
653	chr8	8979311	8979312	rs7839441	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	ERI1	rs7839441-A	NR	9E-9		0.0184066	[0.012-0.025] unit increase	Affymetrix [321114] (imputed)	N
653	chr8	8979311	8979312	rs7839441	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	8p23.1	ERI1	rs7839441-A	NR	2E-8		0.0180171	[0.012-0.024] unit increase	Affymetrix [323858] (imputed)	N
653	chr8	8979311	8979312	rs7839441	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	8p23.1	NR	rs7839441-A	0.384993	5E-9		0.0573914	[0.038-0.077] unit decrease	Affymetrix [21375087] (imputed)	N
653	chr8	8979550	8979551	rs7840818	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	ERI1	rs7840818-T	NR	2E-8		0.0182364	[0.012-0.025] unit increase	Affymetrix [127266] (imputed)	N
653	chr8	8982395	8982396	rs753012	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	8p23.1	ERI1	rs753012-T	NR	9E-11		0.0211409	[0.015-0.028] unit decrease	Affymetrix [323858] (imputed)	N
653	chr8	8990576	8990577	rs189798	23049088	Meng W	2012-10-09	Invest Ophthalmol Vis Sci	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		8p23.1	MYP10, PPP1R3B, MIR4660, MIR124-1, MSRA	rs189798-?	0.658	6E-7		1.92	[NR]	Affymetrix, Illumina [152234]	N
653	chr8	8996328	8996329	rs11777327	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	8p23.1	NR	rs11777327-?	NR	5E-8		1689.8717	NR unit decrease	Illumina [2379855]	N
653	chr8	8997876	8997877	rs330923	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	PPP1R3B	rs330923-T	NR	4E-10		0.0217112	[0.015-0.029] unit decrease	Affymetrix [323858] (imputed)	N
653	chr8	8997876	8997877	rs330923	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	PPP1R3B	rs330923-T	NR	6E-11		0.0227387	[0.016-0.03] unit decrease	Affymetrix [127266] (imputed)	N
653	chr8	8999018	8999019	rs3748140	22832961	Kamboh MI	2012-05-15	Transl Psychiatry	Genome-wide association study of Alzheimer's disease.	Alzheimer's disease	1,291 European ancestry cases, 938 European ancestry controls	509 European ancestry cases, 753 European ancestry controls, 2,218 cases, 2,583 controls	8p23.1	PPP1R3B	rs3748140-?	NR	3E-7		2.43	[NR]	Illumina [2543888] (imputed)	N
653	chr8	9013765	9013766	rs330934	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8p23.1	RP11-10A14.4	rs330934-T	NR	2E-9		0.0180199	[0.012-0.024] unit decrease	Affymetrix [321114] (imputed)	N
653	chr8	9016481	9016482	rs330937	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	RP11-10A14.4	rs330937-G	NR	2E-13		0.0240383	[0.018-0.03] unit decrease	Affymetrix [323858] (imputed)	N
653	chr8	9016481	9016482	rs330937	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	ENSG00000253426	rs330937-C	NR	1E-9		0.010653	[0.0072-0.0141] unit decrease	Affymetrix [18485882] (imputed)	N
653	chr8	9016481	9016482	rs330937	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	8p23.1	PPP1R3B	rs330937-G	0.36	4E-9	(conditional on rs9329170)	1.06	[NR]	Affymetrix, Illumina [6224355] (imputed)	N
653	chr8	9018119	9018120	rs73197779	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	RP11-10A14.4	rs73197779-T	NR	1E-8		0.0225862	[0.015-0.03] unit increase	Affymetrix [323858] (imputed)	N
653	chr8	9018119	9018120	rs73197779	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	RP11-10A14.4	rs73197779-T	NR	1E-9		0.0239487	[0.016-0.032] unit increase	Affymetrix [127266] (imputed)	N
653	chr8	9018589	9018590	rs330939	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	8p23.1	PPP1R3B	rs330939-T	0.6216	8E-6		0.0117	[0.0066-0.0168] unit increase	Affymetrix [19819130] (imputed)	N
653	chr8	9018589	9018590	rs330939	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	8p23.1	PPP1R3B	rs330939-T	0.6216	4E-21		0.0232	[0.018-0.028] unit increase	Affymetrix [19819130] (imputed)	N
653	chr8	9018589	9018590	rs330939	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	8p23.1	PPP1R3B	rs330939-T	0.6216	7E-6		0.0109	[0.0062-0.0156] unit increase	Affymetrix [19819130] (imputed)	N
653	chr8	9018589	9018590	rs330939	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	8p23.1		rs330939-?	NR	2E-15				NR [~ 8900000] (imputed)	N
653	chr8	9018656	9018657	rs330941	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	RP11-10A14.4	rs330941-C	NR	1E-14		0.025222	[0.019-0.032] unit decrease	Affymetrix [127266] (imputed)	N
653	chr8	9018656	9018657	rs330941	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	RP11-10A14.4	rs330941-C	NR	3E-10		0.0202922	[0.014-0.027] unit decrease	Affymetrix [321114] (imputed)	N
653	chr8	9018656	9018657	rs330941	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	8p23.1	RP11-10A14.4	rs330941-C	NR	1E-8		0.0183886	[0.012-0.025] unit decrease	Affymetrix [323858] (imputed)	N
653	chr8	9020438	9020439	rs330942	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	8p23.1	RP11-10A14.4	rs330942-C	0.344044	8E-16		0.021746185	[0.016-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
653	chr8	9020438	9020439	rs330942	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	8p23.1	RP11-10A14.4	rs330942-C	0.344054	3E-10		0.017460072	[0.012-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
653	chr8	9022176	9022177	rs330946	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	8p23.1	RP11-10A14.4	rs330946-C	0.339	1E-12		0.01977628	[0.014-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
653	chr8	9022176	9022177	rs330946	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	8p23.1	RP11-10A14.4	rs330946-C	0.339006	2E-9		0.016777677	[0.011-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
653	chr8	9026638	9026639	rs378974	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	ENSG00000253426	rs378974-C	NR	1E-10		0.011294	[0.0079-0.0147] unit decrease	Affymetrix [18485882] (imputed)	N
653	chr8	9026638	9026639	rs378974	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	8p23.1	RP11-10A14.4	rs378974-T	0.3015	2E-23		0.03957564	[0.032-0.047] unit decrease	Affymetrix [~ 2500000] (imputed)	N
653	chr8	9026638	9026639	rs378974	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	8p23.1	RP11-10A14.4	rs378974-T	0.3015	2E-19		0.03584798	[0.028-0.044] unit decrease	Affymetrix [~ 2500000] (imputed)	N
653	chr8	9026928	9026929	rs440932	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	8p23.1	RP11-10A14.4	rs440932-C	0.3128	5E-20		0.0359819	[0.028-0.044] unit decrease	Affymetrix [~ 2500000] (imputed)	N
653	chr8	9026939	9026940	rs365309	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	8p23.1	RP11-10A14.4	rs365309-G	0.3125	3E-18		0.03414643	[0.026-0.042] unit decrease	Affymetrix [~ 2500000] (imputed)	N
653	chr8	9029412	9029413	rs435581	31888951	Schlauch KA	2019-12-30	G3 (Bethesda)	A Comprehensive Genome-Wide and Phenome-Wide Examination of BMI and Obesity in a Northern Nevadan Cohort.	Obesity (extreme)	984 cases, 2,012 controls	NA	8p23.1	intergenic	rs435581-G	0.5481	3E-6		1.3142331	[1.20-1.43]	Illumina [500508]	N
653	chr8	9030159	9030160	rs3748136	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	8p23.1	NR	rs3748136-A	NR	5E-20		0.0269	[0.021-0.033] unit increase	Affymetrix [9000000] (imputed)	N
653	chr8	9030159	9030160	rs3748136	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	8p23.1	NR	rs3748136-A	NR	4E-10		0.0185	[0.013-0.024] unit increase	Affymetrix [9000000] (imputed)	N
653	chr8	9030159	9030160	rs3748136	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	8p23.1	RP11-10A14.4	rs3748136-A	0.209036	2E-171		0.08483598	[0.079-0.091] unit increase	Affymetrix [93095623] (imputed)	N
653	chr8	9030159	9030160	rs3748136	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	8p23.1	RP11-10A14.4	rs3748136-A	0.209166	2E-25		0.031814266	[0.026-0.038] unit increase	Affymetrix [93095623] (imputed)	N
653	chr8	9030159	9030160	rs3748136	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8p23.1	NR	rs3748136-G	0.794077	2E-18				Affymetrix, Illumina [17210439] (imputed)	N
653	chr8	9030159	9030160	rs3748136	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	8p23.1	NR	rs3748136-G	0.791646	5E-19		0.021289	[0.017-0.026] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
653	chr8	9030159	9030160	rs3748136	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	8p23.1	RP11-10A14.4	rs3748136-A	0.2102	2E-17		0.03746397	[0.029-0.046] unit increase	Affymetrix [~ 2500000] (imputed)	N
653	chr8	9030159	9030160	rs3748136	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	8p23.1	RP11-10A14.4	rs3748136-A	0.2102	1E-15		0.03530437	[0.027-0.044] unit increase	Affymetrix [~ 2500000] (imputed)	N
653	chr8	9030159	9030160	rs3748136	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	8p23.1	RP11-10A14.4	rs3748136-A	0.21	2E-71		0.07902126	[0.07-0.088] unit increase	Affymetrix [~ 2500000] (imputed)	N
653	chr8	9030386	9030387	rs453301	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption interaction (2df test)	63,608 European ancestry drinkers, 10,193 African American or Afro-Caribbean heavy drinkers,  2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,494 European ancestry non-drinkers, 11,224 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,002 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,452 Hispanic drinkers, 43,316 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,945 Asian ancestry non-drinkers, 6,925 Hispanic non-drinkers	8p23.1	LOC102724880, PPP1R3B	rs453301-T	0.51	1E-15	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
653	chr8	9030386	9030387	rs453301	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption interaction (2df test)	63,607 European ancestry drinkers, 10,193 African American or Afro-Caribbean drinkers, 2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,492 European ancestry non-drinkers, 11,223 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,058 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	8p23.1	LOC102724880, PPP1R3B	rs453301-T	0.5038	1E-10	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
653	chr8	9030386	9030387	rs453301	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption interaction (2df test)	63,607 European ancestry drinkers, 10,193 African American or Afro-Caribbean drinkers, 2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,492 European ancestry non-drinkers, 11,223 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,058 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	8p23.1	LOC102724880, PPP1R3B	rs453301-T	0.5	5E-12	(EA, Hispanic)			Affymetrix, Illumina [up to 39321347] (imputed)	N
653	chr8	9030386	9030387	rs453301	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Joint mobility (Beighton score)	64,143 European ancestry individuals	NA	8p23.1	PPP1R3B, TNKS	rs453301-?	NR	1E-7		0.059	[0.080-0.037] unit decrease	Illumina [12039492] (imputed)	N
653	chr8	9030754	9030754	rs575193565	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	8p23.1		rs575193565-CT	0.255014	5E-20		0.02461825	[0.019-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
653	chr8	9031476	9031477	rs34775014	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	8p23.1		rs34775014-C	0.232663	2E-12		0.019974614	[0.014-0.026] unit increase	Affymetrix [93095623] (imputed)	N
653	chr8	9031703	9031704	rs398801	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	RP11-10A14.6	rs398801-A	NR	2E-11		0.0233482	[0.017-0.03] unit decrease	Affymetrix [323858] (imputed)	N
653	chr8	9032645	9032646	rs13260471	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	8p23.1	NR	rs13260471-G	0.191825	1E-26		0.034869872	[0.028-0.041] unit increase	Affymetrix [93095623] (imputed)	N
653	chr8	9032645	9032646	rs13260471	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	8p23.1	NR	rs13260471-G	0.191823	8E-27		0.034990493	[0.029-0.041] unit increase	Affymetrix [93095623] (imputed)	N
653	chr8	9032645	9032646	rs13260471	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	8p23.1		rs13260471-G	0.191801	1E-26		0.03498397	[0.029-0.041] unit increase	Affymetrix [93095623] (imputed)	N
653	chr8	9033092	9033093	rs393155	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	8p23.1		rs393155-G	0.506854	7E-17		0.0333104	[0.025-0.041] unit decrease	NR [11722792] (imputed)	N
653	chr8	9033092	9033093	rs393155	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	ENSG00000253252	rs393155-G	NR	1E-14		0.01347	[0.01-0.017] unit decrease	Affymetrix [18485882] (imputed)	N
653	chr8	9033092	9033093	rs393155	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	8p23.1	Intergenic	rs393155-A	0.4936	2E-18	(MTAG)	0.0157	[0.012-0.019] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
653	chr8	9033092	9033093	rs393155	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	8p23.1	intergenic	rs393155-A	0.49385	2E-26		10.661	z score decrease	Illumina [18485882] (imputed)	N
653	chr8	9034147	9034148	rs367543	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	RP11-10A14.6	rs367543-C	NR	3E-11		0.0211431	[0.015-0.027] unit increase	Affymetrix [323858] (imputed)	N
653	chr8	9034147	9034148	rs367543	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	RP11-10A14.6	rs367543-C	NR	1E-12		0.0226204	[0.016-0.029] unit increase	Affymetrix [127266] (imputed)	N
653	chr8	9034147	9034148	rs367543	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	RP11-10A14.6	rs367543-C	NR	4E-11		0.0206436	[0.015-0.027] unit increase	Affymetrix [321114] (imputed)	N
653	chr8	9034147	9034148	rs367543	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	8p23.1	RP11-10A14.6	rs367543-C	NR	8E-9		0.0181011	[0.012-0.024] unit increase	Affymetrix [323858] (imputed)	N
653	chr8	9034147	9034148	rs367543	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	8p23.1		rs367543-?	NR	9E-87		0.0414387	[0.037-0.046] unit decrease	Affymetrix [20259828] (imputed)	N
653	chr8	9034147	9034148	rs367543	28472463	Mullin BH	2017-05-04	Hum Mol Genet	Genome-wide association study meta-analysis for quantitative ultrasound parameters of bone identifies five novel loci for broadband ultrasound attenuation.	Bone ultrasound measurement (broadband ultrasound attenuation)	1,268 whole genome sequenced European ancestry women, 8,880 European ancestry women, 6,479 European ancestry men	NA	8p23.1	PPP1R3B	rs367543-C	0.45	2E-9		0.07	[0.05-0.09] unit decrease	Illumina [11973598] (imputed)	N
653	chr8	9034147	9034148	rs367543	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	8p23.1	NR	rs367543-T	NR	8E-6		1.05	[NR]	Illumina [7158791] (imputed)	N
653	chr8	9035077	9035078	rs106380	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8p23.1	RP11-10A14.6	rs106380-G	NR	7E-11		0.0188593	[0.013-0.025] unit increase	Affymetrix [321114] (imputed)	N
653	chr8	9035077	9035078	rs106380	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	8p23.1	RP11-10A14.6	rs106380-G	NR	2E-9		0.0172726	[0.012-0.023] unit increase	Affymetrix [321169] (imputed)	N
653	chr8	9036107	9036108	rs62494425	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	ENSG00000253252	rs62494425-A	NR	2E-11		0.011704	[0.0083-0.0151] unit decrease	Affymetrix [18485882] (imputed)	N
653	chr8	9036107	9036108	rs62494425	28472463	Mullin BH	2017-05-04	Hum Mol Genet	Genome-wide association study meta-analysis for quantitative ultrasound parameters of bone identifies five novel loci for broadband ultrasound attenuation.	Bone ultrasound measurement (broadband ultrasound attenuation)	1,268 whole genome sequenced European ancestry women, 8,880 European ancestry women, 6,479 European ancestry men	NA	8p23.1	PPP1R3B, LOC101929128	rs62494425-G	0.47	3E-7	(male)	0.09	[0.051-0.129] unit increase	Illumina [11973598] (imputed)	N
653	chr8	9036135	9036136	rs144319869	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	8p23.1		rs144319869-?	NR	1E-10				NR [~ 8900000] (imputed)	N
653	chr8	9036563	9036564	rs7823283	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	ENSG00000253252	rs7823283-T	NR	5E-8		0.009436	[0.006-0.0128] unit decrease	Affymetrix [18485882] (imputed)	N
653	chr8	9038595	9038596	rs1994020	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8p23.1	RP11-10A14.6	rs1994020-C	NR	3E-8		0.0160797	[0.01-0.022] unit decrease	Affymetrix [321114] (imputed)	N
653	chr8	9039509	9039510	rs191707442	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		8p23.1	Intergenic	rs191707442-T	0.008	6E-6	(liability model)	0.47	[0.27-0.67] unit increase	NR [19725427] (imputed)	N
653	chr8	9042453	9042454	rs11249905	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	RP11-10A14.6	rs11249905-G	NR	3E-8		0.0179627	[0.012-0.024] unit decrease	Affymetrix [127266] (imputed)	N
653	chr8	9042453	9042454	rs11249905	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	RP11-10A14.6	rs11249905-G	NR	4E-8		0.0176404	[0.011-0.024] unit decrease	Affymetrix [321114] (imputed)	N
653	chr8	9042606	9042607	rs11249906	32589924	Bi W	2020-06-23	Am J Hum Genet	A Fast and Accurate Method for Genome-Wide Time-to-Event Data Analysis and Its Application to UK Biobank.	Essential hypertension (time to event)	76,566 British ancestry cases, 206,305 British ancestry controls	NA	8p23.1	PPP1R3B, LOC101929128	rs11249906-?	NR	6E-8				NR [~ 24000000] (imputed)	N
654	chr8	9044039	9044040	rs11775297	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	8p23.1	NR	rs11775297-C	NR	2E-19		0.0221	[0.017-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
654	chr8	9044039	9044040	rs11775297	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	8p23.1	NR	rs11775297-C	NR	2E-9		0.0147	[0.0098-0.0196] unit decrease	Affymetrix [9000000] (imputed)	N
654	chr8	9044764	9044765	rs4841105	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8p23.1	RP11-10A14.5	rs4841105-C	NR	1E-8		0.0171292	[0.011-0.023] unit decrease	Affymetrix [321114] (imputed)	N
654	chr8	9044896	9044897	rs4841107	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	RP11-10A14.5	rs4841107-G	NR	1E-8		0.0189408	[0.012-0.025] unit decrease	Affymetrix [323858] (imputed)	N
654	chr8	9044896	9044897	rs4841107	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	RP11-10A14.5	rs4841107-G	NR	1E-9		0.0202683	[0.014-0.027] unit decrease	Affymetrix [127266] (imputed)	N
654	chr8	9044896	9044897	rs4841107	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	RP11-10A14.5	rs4841107-G	NR	3E-11		0.022009	[0.016-0.028] unit decrease	Affymetrix [321114] (imputed)	N
654	chr8	9044896	9044897	rs4841107	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	8p23.1	RP11-10A14.5	rs4841107-G	NR	1E-9		0.0200154	[0.014-0.026] unit decrease	Affymetrix [323858] (imputed)	N
654	chr8	9046311	9046312	rs1968853	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	RP11-10A14.5	rs1968853-C	NR	3E-8		0.017507	[0.011-0.024] unit decrease	Affymetrix [127266] (imputed)	N
654	chr8	9046311	9046312	rs1968853	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	RP11-10A14.5	rs1968853-C	NR	5E-9		0.0181168	[0.012-0.024] unit decrease	Affymetrix [321114] (imputed)	N
654	chr8	9046311	9046312	rs1968853	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	8p23.1	RP11-10A14.5	rs1968853-C	NR	2E-8		0.0176184	[0.012-0.024] unit decrease	Affymetrix [323858] (imputed)	N
654	chr8	9047177	9047178	rs2010390	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	RP11-10A14.5	rs2010390-A	NR	2E-8		0.0191544	[0.012-0.026] unit decrease	Affymetrix [323858] (imputed)	N
654	chr8	9047177	9047178	rs2010390	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	RP11-10A14.5	rs2010390-A	NR	3E-9		0.0201989	[0.014-0.027] unit decrease	Affymetrix [127266] (imputed)	N
654	chr8	9047177	9047178	rs2010390	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	RP11-10A14.5	rs2010390-A	NR	3E-9		0.010315	[0.0069-0.0137] unit increase	Affymetrix [18485882] (imputed)	N
654	chr8	9050724	9050725	rs3102078	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	8p23.1	RP11-10A14.5	rs3102078-C	NR	2E-8		0.0182114	[0.012-0.025] unit decrease	Affymetrix [323858] (imputed)	N
654	chr8	9054421	9054422	rs13266650	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8p23.1	RP11-10A14.5	rs13266650-G	NR	3E-9		0.0180692	[0.012-0.024] unit decrease	Affymetrix [321114] (imputed)	N
654	chr8	9054817	9054817	rs142325473	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	RP11-10A14.5	rs142325473-AAAAT	NR	1E-9		0.0201263	[0.014-0.027] unit decrease	Affymetrix [321114] (imputed)	N
654	chr8	9055771	9055772	rs10094141	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	8p23.1	NR	rs10094141-A	0.6683	1E-7	(Superior Temporal)	10.771808	[6.77-14.78] unit increase	Affymetrix, Illumina [NR]	N
654	chr8	9060043	9060044	rs959932	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	8p23.1	NR	rs959932-C	0.24803224885041	4E-8		0.009570655	[0.0061-0.013] unit decrease	NR [NR]	N
654	chr8	9072728	9072729	rs10112237	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	RP11-10A14.5	rs10112237-T	NR	5E-9		0.0187209	[0.012-0.025] unit decrease	Affymetrix [321114] (imputed)	N
654	chr8	9074222	9074223	rs7006504	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	RP11-10A14.5	rs7006504-C	NR	7E-14		0.0243638	[0.018-0.031] unit increase	Affymetrix [323858] (imputed)	N
654	chr8	9074222	9074223	rs7006504	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	RP11-10A14.5	rs7006504-C	NR	4E-15		0.0255888	[0.019-0.032] unit increase	Affymetrix [127266] (imputed)	N
654	chr8	9074222	9074223	rs7006504	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	RP11-10A14.5	rs7006504-C	NR	6E-16		0.0260278	[0.02-0.032] unit increase	Affymetrix [321114] (imputed)	N
654	chr8	9074222	9074223	rs7006504	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	8p23.1	RP11-10A14.5	rs7006504-C	NR	7E-15		0.0250851	[0.019-0.031] unit increase	Affymetrix [323858] (imputed)	N
654	chr8	9074222	9074223	rs7006504	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	8p23.1	PPP1R3B, ENSG00000254235, ENSG00000182319, RP11-10A14.5	rs7006504-C	0.297	2E-9		6.005	NR z score decrease	Illumina [26237160] (imputed)	N
654	chr8	9079771	9079771	rs150365637	29559693	Zengini E	2018-03-20	Nat Genet	Genome-wide analyses using UK Biobank data provide insights into the genetic architecture of osteoarthritis.	Osteoarthritis (self-reported)	12,658 European ancestry cases, 50,898 European ancestry controls		8p23.1	NR	rs150365637-GT	0.117244	2E-7		1.10607	[1.06075-1.15333]	Affymetrix [16499239] (imputed)	N
654	chr8	9079844	9079845	rs17706729	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	RP11-10A14.8	rs17706729-G	NR	7E-9		0.0200799	[0.013-0.027] unit increase	Affymetrix [323858] (imputed)	N
654	chr8	9079844	9079845	rs17706729	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	RP11-10A14.8	rs17706729-G	NR	2E-9		0.0207116	[0.014-0.028] unit increase	Affymetrix [127266] (imputed)	N
654	chr8	9079844	9079845	rs17706729	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	RP11-10A14.8	rs17706729-G	NR	3E-9		0.020346	[0.014-0.027] unit increase	Affymetrix [321114] (imputed)	N
654	chr8	9079844	9079845	rs17706729	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	8p23.1	RP11-10A14.8	rs17706729-G	NR	1E-10		0.0221138	[0.015-0.029] unit increase	Affymetrix [323858] (imputed)	N
654	chr8	9084120	9084121	rs2929308	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8p23.1	RP11-10A14.8	rs2929308-T	NR	8E-14		0.0212616	[0.016-0.027] unit decrease	Affymetrix [321114] (imputed)	N
654	chr8	9084120	9084121	rs2929308	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	8p23.1	RP11-10A14.8	rs2929308-T	NR	5E-12		0.0197285	[0.014-0.025] unit decrease	Affymetrix [321169] (imputed)	N
654	chr8	9084120	9084121	rs2929308	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	8p23.1	LOC101929128	rs2929308-T	0.492135	1E-90		0.0395283	[0.036-0.043] unit increase	NR [13737936] (imputed)	N
654	chr8	9084120	9084121	rs2929308	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	8p23.1		rs2929308-?	NR	3E-21				NR [~ 8900000] (imputed)	N
654	chr8	9084120	9084121	rs2929308	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	8p23.1		rs2929308-?	NR	2E-126		0.0487802	[0.045-0.053] unit increase	Affymetrix [20259828] (imputed)	N
654	chr8	9084120	9084121	rs2929308	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	8p23.1	LOC101929128	rs2929308-T	0.490823	3E-22	(women)	0.0432751	[0.034-0.052] unit increase	NR [17166351] (imputed)	N
654	chr8	9084120	9084121	rs2929308	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	8p23.1	LOC101929128	rs2929308-T	0.490687	2E-39		0.0424585	[0.036-0.049] unit increase	NR [17166351] (imputed)	N
654	chr8	9084120	9084121	rs2929308	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	8p23.1	LOC101929128	rs2929308-T	0.490531	1E-15	(men)	0.039492	[0.029-0.049] unit increase	NR [17166351] (imputed)	N
654	chr8	9084276	9084277	rs62496289	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	8p23.1	Intergenic	rs62496289-C	0.8449	5E-8		0.0147	[0.0094-0.02] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
654	chr8	9085294	9085295	rs2929451	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	8p23.1	NR	rs2929451-T	0.51161	4E-11		0.0441355	[0.031-0.057] unit decrease	Affymetrix [17914406] (imputed)	N
654	chr8	9085294	9085295	rs2929451	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Osteoarthritis (hip)	15,704 European ancestry cases, 378,169 European ancestry controls	NA	8p23.1	NR	rs2929451-A	0.49	3E-9		1.07	[1.05-1.1]	Affymetrix, Illumina [up to 17000000] (imputed)	N
654	chr8	9085294	9085295	rs2929451	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Nose size	67,023 European ancestry individuals	NA	8p23.1	PPP1R3B, TNKS	rs2929451-?	NR	6E-11		0.027	[0.019-0.035] unit increase	Illumina [12039491] (imputed)	N
654	chr8	9087277	9087278	rs330048	26606652	Alarcon-Riquelme ME	2015-11-25	Arthritis Rheumatol	Genome-Wide Association Study in an Amerindian Ancestry Population Reveals Novel Systemic Lupus Erythematosus Risk Loci and the Role of European Admixture.	Systemic lupus erythematosus	862 Native American ancestry-enriched North American cases, 531 Native American ancestry-enriched South American cases, 1,973 Native American ancestry-enriched North American controls, 344 Native American ancestry-enriched South American controls	NA	8p23.1	Intergenic	rs330048-A	0.766	7E-6		1.41	[1.22-1.64]	Illumina [580483] (imputed)	N
654	chr8	9087678	9087679	rs330050	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Osteoarthritis	77,052 European ancestry cases, 378,169 European ancestry controls	NA	8p23.1	NR	rs330050-G	0.51	2E-11		1.04	[1.03-1.05]	Affymetrix, Illumina [up to 17000000] (imputed)	N
654	chr8	9088244	9088245	rs330052	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	8p23.1	NR	rs330052-G	NR	7E-12		0.0211	[0.015-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
654	chr8	9088290	9088291	rs330054	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	ENSG00000254091	rs330054-G	NR	7E-10		0.010769	[0.0074-0.0142] unit increase	Affymetrix [18485882] (imputed)	N
654	chr8	9089808	9089809	rs330058	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	RP11-10A14.8	rs330058-G	NR	3E-14		0.0238135	[0.018-0.03] unit decrease	Affymetrix [323858] (imputed)	N
654	chr8	9089808	9089809	rs330058	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	RP11-10A14.8	rs330058-G	NR	9E-16		0.0251578	[0.019-0.031] unit decrease	Affymetrix [127266] (imputed)	N
654	chr8	9089808	9089809	rs330058	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	RP11-10A14.8	rs330058-G	NR	4E-15		0.0243161	[0.018-0.03] unit decrease	Affymetrix [321114] (imputed)	N
654	chr8	9089808	9089809	rs330058	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	8p23.1	RP11-10A14.8	rs330058-G	NR	2E-13		0.0226937	[0.017-0.029] unit decrease	Affymetrix [323858] (imputed)	N
654	chr8	9091550	9091551	rs6601295	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	ENSG00000254091	rs6601295-A	NR	7E-9		0.010183	[0.0067-0.0136] unit decrease	Affymetrix [18485882] (imputed)	N
654	chr8	9091738	9091739	rs6601296	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x long total sleep time interaction (2df test)	at least 2,926 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, at least 7,664 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,906 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 31,986 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 317 East Asian ancestry long sleepers, up to 5,171 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 928 African American controls, 1,301 East Asian ancestry controls, up to 20,961 European ancestry controls, 10,064 Hispanic controls	8p23.1	AC022784.6	rs6601296-?	NR	2E-10		0.01712	[0.012-0.022] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
654	chr8	9095895	9095896	rs17149592	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	8p23.1	NR	rs17149592-A	NR	1E-9		0.0194	[0.013-0.026] unit increase	Affymetrix [9000000] (imputed)	N
654	chr8	9099172	9099173	rs7843880	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	RP11-115J16.1	rs7843880-G	NR	2E-9		0.0201193	[0.014-0.027] unit decrease	Affymetrix [323858] (imputed)	N
654	chr8	9099172	9099173	rs7843880	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	RP11-115J16.1	rs7843880-G	NR	2E-10		0.0212303	[0.015-0.028] unit decrease	Affymetrix [127266] (imputed)	N
654	chr8	9099172	9099173	rs7843880	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8p23.1	RP11-115J16.1	rs7843880-G	NR	1E-8		0.0173648	[0.011-0.023] unit decrease	Affymetrix [321114] (imputed)	N
654	chr8	9099172	9099173	rs7843880	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	RP11-115J16.1	rs7843880-G	NR	1E-9		0.020157	[0.014-0.027] unit decrease	Affymetrix [321114] (imputed)	N
654	chr8	9099172	9099173	rs7843880	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	8p23.1	RP11-115J16.1	rs7843880-G	NR	3E-8		0.0167866	[0.011-0.023] unit decrease	Affymetrix [321169] (imputed)	N
654	chr8	9099172	9099173	rs7843880	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	8p23.1	RP11-115J16.1	rs7843880-G	NR	4E-9		0.0194948	[0.013-0.026] unit decrease	Affymetrix [323858] (imputed)	N
654	chr8	9100065	9100066	rs77890460	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	8p23.1	NR	rs77890460-T	NR	1E-18		0.0365	[0.028-0.045] unit increase	Affymetrix [9000000] (imputed)	N
654	chr8	9100575	9100576	rs17656431	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8p23.1	RP11-115J16.1	rs17656431-T	NR	4E-8		0.0196528	[0.013-0.027] unit decrease	Affymetrix [321114] (imputed)	N
654	chr8	9100990	9100991	rs67081905	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	8p23.1	RP11-115J16.1	rs67081905-A	NR	9E-10		0.0192617	[0.013-0.025] unit increase	Affymetrix [323858] (imputed)	N
654	chr8	9102999	9103000	rs330037	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	RP11-115J16.1	rs330037-C	NR	1E-8		0.0179939	[0.012-0.024] unit decrease	Affymetrix [323858] (imputed)	N
654	chr8	9102999	9103000	rs330037	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	RP11-115J16.1	rs330037-C	NR	9E-10		0.0193304	[0.013-0.026] unit decrease	Affymetrix [127266] (imputed)	N
654	chr8	9102999	9103000	rs330037	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8p23.1	RP11-115J16.1	rs330037-C	NR	3E-9		0.0169901	[0.011-0.023] unit decrease	Affymetrix [321114] (imputed)	N
654	chr8	9102999	9103000	rs330037	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	8p23.1	RP11-115J16.1	rs330037-C	NR	3E-8		0.0159885	[0.01-0.022] unit decrease	Affymetrix [321169] (imputed)	N
654	chr8	9104523	9104524	rs2126265	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	RP11-115J16.1	rs2126265-C	NR	4E-8		0.0207259	[0.013-0.028] unit decrease	Affymetrix [127266] (imputed)	N
654	chr8	9104589	9104590	rs10102807	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	8p23.1		rs10102807-T	NR	5E-14		0.0128	[0.0095-0.0161] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
654	chr8	9104589	9104590	rs10102807	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	RP11-115J16.1	rs10102807-T	NR	3E-14		0.0244018	[0.018-0.031] unit increase	Affymetrix [323858] (imputed)	N
654	chr8	9104589	9104590	rs10102807	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	RP11-115J16.1	rs10102807-T	NR	5E-16		0.0260932	[0.02-0.032] unit increase	Affymetrix [127266] (imputed)	N
654	chr8	9104589	9104590	rs10102807	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8p23.1	RP11-115J16.1	rs10102807-T	NR	6E-10		0.0181471	[0.012-0.024] unit increase	Affymetrix [321114] (imputed)	N
654	chr8	9104589	9104590	rs10102807	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	RP11-115J16.1	rs10102807-T	NR	1E-19		0.02879	[0.023-0.035] unit increase	Affymetrix [321114] (imputed)	N
654	chr8	9104589	9104590	rs10102807	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	8p23.1	RP11-115J16.1	rs10102807-T	NR	1E-16		0.0263717	[0.02-0.033] unit increase	Affymetrix [323858] (imputed)	N
654	chr8	9105171	9105172	rs330042	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	8p23.1	RP11-10A14.4	rs330042-G	0.734194	1E-11		0.0145553	[0.01-0.019] unit decrease	Affymetrix [NR] (imputed)	N
654	chr8	9106957	9106958	rs9693223	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	RP11-115J16.1	rs9693223-T	NR	2E-11		0.0209513	[0.015-0.027] unit increase	Affymetrix [321114] (imputed)	N
654	chr8	9109215	9109216	rs17149632	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	8p23.1	PPP1R3B	rs17149632-T	0.7088	4E-11		0.017171184	[0.012-0.022] unit decrease	Affymetrix [11515109] (imputed)	N
654	chr8	9110821	9110822	rs6984551	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA		NR	rs6984551-T	0.673705	3E-8		0.0121806	[0.0079-0.0165] unit decrease	NR [NR]	N
654	chr8	9116348	9116349	rs9987353	21775986	Hinch AG	2011-07-20	Nature	The landscape of recombination in African Americans.	Recombination measurement	30,033 African American individuals	NA	8p23.1	intergenic	rs9987353-?	1.0	8E-9	(Hotspot usage)			Affymetrix, Illumina [3058149] (imputed)	N
654	chr8	9118791	9118792	rs13262447	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	RP11-115J16.1	rs13262447-T	NR	1E-9		0.01916	[0.013-0.025] unit increase	Affymetrix [321114] (imputed)	N
654	chr8	9127612	9127613	rs7838353	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	RP11-115J16.1	rs7838353-T	NR	3E-8		0.0175569	[0.011-0.024] unit decrease	Affymetrix [127266] (imputed)	N
654	chr8	9127612	9127613	rs7838353	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	8p23.1	PPP1R3B	rs7838353-T	0.446	3E-8		0.0066	[0.0042-0.009] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
654	chr8	9127868	9127869	rs12545920	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	RP11-115J16.1	rs12545920-C	NR	3E-10		0.0212421	[0.015-0.028] unit decrease	Affymetrix [323858] (imputed)	N
654	chr8	9127868	9127869	rs12545920	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	RP11-115J16.1	rs12545920-C	NR	4E-11		0.0223211	[0.016-0.029] unit decrease	Affymetrix [127266] (imputed)	N
654	chr8	9127868	9127869	rs12545920	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	RP11-115J16.1	rs12545920-C	NR	2E-8		0.0185813	[0.012-0.025] unit decrease	Affymetrix [321114] (imputed)	N
654	chr8	9127868	9127869	rs12545920	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	8p23.1	RP11-115J16.1	rs12545920-C	NR	1E-8		0.0191141	[0.013-0.026] unit decrease	Affymetrix [323858] (imputed)	N
654	chr8	9139384	9139385	rs35579431	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	8p23.1	NR	rs35579431-T	NR	2E-23		0.0272	[0.022-0.032] unit increase	Affymetrix [9000000] (imputed)	N
654	chr8	9139384	9139385	rs35579431	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	8p23.1	NR	rs35579431-T	NR	7E-12		0.0188	[0.014-0.024] unit increase	Affymetrix [9000000] (imputed)	N
654	chr8	9139384	9139385	rs35579431	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	8p23.1	NR	rs35579431-T	NR	1E-10		0.0175	[0.012-0.023] unit increase	Affymetrix [9000000] (imputed)	N
654	chr8	9140586	9140587	rs329988	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	RP11-115J16.1	rs329988-T	NR	2E-16		0.0267936	[0.02-0.033] unit increase	Affymetrix [321114] (imputed)	N
654	chr8	9140586	9140587	rs329988	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	8p23.1	RP11-115J16.1	rs329988-T	NR	1E-13		0.0243731	[0.018-0.031] unit increase	Affymetrix [323858] (imputed)	N
654	chr8	9143049	9143050	rs80279740	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	RP11-115J16.1	rs80279740-A	NR	5E-8		0.0095209	[0.0061-0.0129] unit decrease	Affymetrix [18485882] (imputed)	N
654	chr8	9143520	9143521	rs11249913	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8p23.1	RP11-115J16.1	rs11249913-G	NR	2E-8		0.0165937	[0.011-0.022] unit decrease	Affymetrix [321114] (imputed)	N
654	chr8	9143520	9143521	rs11249913	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	RP11-115J16.1	rs11249913-G	NR	7E-9		0.0184522	[0.012-0.025] unit decrease	Affymetrix [321114] (imputed)	N
654	chr8	9143520	9143521	rs11249913	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	8p23.1	RP11-115J16.1	rs11249913-G	NR	3E-8		0.0162448	[0.01-0.022] unit decrease	Affymetrix [321169] (imputed)	N
654	chr8	9144410	9144411	rs329989	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	RP11-115J16.1	rs329989-T	NR	2E-11		0.0208938	[0.015-0.027] unit increase	Affymetrix [321114] (imputed)	N
654	chr8	9144410	9144411	rs329989	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	8p23.1	RP11-115J16.1	rs329989-T	NR	3E-10		0.0197498	[0.014-0.026] unit increase	Affymetrix [323858] (imputed)	N
654	chr8	9144731	9144732	rs370562166	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	RP11-115J16.1	rs370562166-C	NR	2E-9		0.0189813	[0.013-0.025] unit increase	Affymetrix [127266] (imputed)	N
654	chr8	9144736	9144736	rs368098893	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	RP11-115J16.1	rs368098893-G	NR	2E-8		0.0178278	[0.012-0.024] unit increase	Affymetrix [323858] (imputed)	N
654	chr8	9149611	9149612	rs330089	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	8p23.1	NR	rs330089-C	NR	6E-12		0.0274	[0.02-0.035] unit increase	Affymetrix [9000000] (imputed)	N
654	chr8	9149611	9149612	rs330089	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	8p23.1	NR	rs330089-C	NR	2E-10		0.0266	[0.018-0.035] unit increase	Affymetrix [9000000] (imputed)	N
654	chr8	9149611	9149612	rs330089	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	8p23.1	NR	rs330089-C	NR	7E-11		0.0272	[0.019-0.035] unit increase	Affymetrix [9000000] (imputed)	N
654	chr8	9149745	9149746	rs330088	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	RP11-115J16.1	rs330088-T	NR	3E-12		0.0219619	[0.016-0.028] unit increase	Affymetrix [323858] (imputed)	N
654	chr8	9149745	9149746	rs330088	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	RP11-115J16.1	rs330088-T	NR	5E-14		0.0236485	[0.017-0.03] unit increase	Affymetrix [127266] (imputed)	N
654	chr8	9149745	9149746	rs330088	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	8p23.1	RP11-115J16.1	rs330088-T	NR	5E-8		0.0154881	[0.0099-0.021] unit increase	Affymetrix [321016] (imputed)	N
654	chr8	9149745	9149746	rs330088	30846698	Dashti HS	2019-03-07	Nat Commun	Genome-wide association study identifies genetic loci for self-reported habitual sleep duration supported by accelerometer-derived estimates.	Sleep duration	446,118 European ancestry individuals	47,180  adults, 10,554 children or adolescents	8p23.1	NR	rs330088-C	NR	1E-7		0.666	unit decrease	Affymetrix [14661600] (imputed)	N
654	chr8	9150078	9150079	rs330087	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8p23.1	RP11-115J16.1	rs330087-C	NR	9E-10		0.0183052	[0.012-0.024] unit increase	Affymetrix [321114] (imputed)	N
654	chr8	9150078	9150079	rs330087	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	8p23.1	RP11-115J16.1	rs330087-C	NR	2E-8		0.0168325	[0.011-0.023] unit increase	Affymetrix [321169] (imputed)	N
654	chr8	9150524	9150525	rs10503387	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption interaction (2df test)	63,608 European ancestry drinkers, 10,193 African American or Afro-Caribbean heavy drinkers,  2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,494 European ancestry non-drinkers, 11,224 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,002 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,452 Hispanic drinkers, 43,316 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,945 Asian ancestry non-drinkers, 6,925 Hispanic non-drinkers	8p23.1	LOC157273	rs10503387-T	0.3784	8E-16	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
654	chr8	9150524	9150525	rs10503387	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption interaction (2df test)	63,608 European ancestry drinkers, 10,193 African American or Afro-Caribbean heavy drinkers,  2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,494 European ancestry non-drinkers, 11,224 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,002 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,452 Hispanic drinkers, 43,316 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,945 Asian ancestry non-drinkers, 6,925 Hispanic non-drinkers	8p23.1	LOC157273	rs10503387-T	0.37	1E-14	(AA, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
654	chr8	9151050	9151051	rs62493780	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	8p23.1	PPP1R3B, TNKS	rs62493780-?	NR	3E-13	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
654	chr8	9151050	9151051	rs62493780	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	8p23.1	PPP1R3B, TNKS	rs62493780-?	NR	3E-13				Affymetrix, Illumina [18800000] (imputed)	N
654	chr8	9151050	9151051	rs62493780	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	8p23.1	PPP1R3B, TNKS	rs62493780-?	NR	3E-12				Affymetrix, Illumina [18800000] (imputed)	N
654	chr8	9151050	9151051	rs62493780	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	8p23.1	PPP1R3B, TNKS	rs62493780-?		9E-12	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
654	chr8	9151050	9151051	rs62493780	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	8p23.1	PPP1R3B, TNKS	rs62493780-?	NR	4E-9	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
654	chr8	9151050	9151051	rs62493780	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	8p23.1	PPP1R3B, TNKS	rs62493780-?	NR	4E-9				Affymetrix, Illumina [18800000] (imputed)	N
654	chr8	9151050	9151051	rs62493780	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	8p23.1	PPP1R3B, TNKS	rs62493780-?	NR	3E-8	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
654	chr8	9151050	9151051	rs62493780	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	8p23.1	PPP1R3B, TNKS	rs62493780-?	NR	2E-8				Affymetrix, Illumina [18800000] (imputed)	N
654	chr8	9151687	9151688	rs49675	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	8p23.1	RP11-10A14.4	rs49675-G	0.901949	2E-10		0.0211674	[0.015-0.028] unit decrease	Affymetrix [NR] (imputed)	N
654	chr8	9152516	9152517	rs747751	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	8p23.1	NR	rs747751-G	NR	2E-9		0.0238	[0.016-0.032] unit decrease	Affymetrix [9000000] (imputed)	N
654	chr8	9153017	9153018	rs67915375	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	RP11-115J16.1	rs67915375-T	NR	1E-8		0.018773	[0.012-0.025] unit increase	Affymetrix [323858] (imputed)	N
654	chr8	9153017	9153018	rs67915375	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	RP11-115J16.1	rs67915375-T	NR	8E-10		0.0203386	[0.014-0.027] unit increase	Affymetrix [127266] (imputed)	N
654	chr8	9153126	9153127	rs11774353	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	RP11-115J16.1	rs11774353-T	NR	6E-10		0.0202985	[0.014-0.027] unit decrease	Affymetrix [323858] (imputed)	N
654	chr8	9153126	9153127	rs11774353	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	RP11-115J16.1	rs11774353-T	NR	7E-11		0.0213601	[0.015-0.028] unit decrease	Affymetrix [127266] (imputed)	N
654	chr8	9153126	9153127	rs11774353	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	8p23.1	RP11-115J16.1	rs11774353-T	NR	4E-9		0.0191189	[0.013-0.025] unit decrease	Affymetrix [323858] (imputed)	N
654	chr8	9153238	9153239	rs11781008	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption interaction (2df test)	63,607 European ancestry drinkers, 10,193 African American or Afro-Caribbean drinkers, 2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,492 European ancestry non-drinkers, 11,223 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,058 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	8p23.1	LOC157273	rs11781008-T	0.37	1E-11	(EA, Hispanic)			Affymetrix, Illumina [up to 39321347] (imputed)	N
654	chr8	9153238	9153239	rs11781008	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption interaction (2df test)	63,607 European ancestry drinkers, 10,193 African American or Afro-Caribbean drinkers, 2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,492 European ancestry non-drinkers, 11,223 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,058 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	8p23.1	LOC157273	rs11781008-T	0.3691	8E-11	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
654	chr8	9154064	9154065	rs330081	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	RP11-115J16.1	rs330081-C	NR	4E-8		0.0172792	[0.011-0.023] unit increase	Affymetrix [127266] (imputed)	N
654	chr8	9154064	9154065	rs330081	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8p23.1	RP11-115J16.1	rs330081-C	NR	6E-11		0.018698	[0.013-0.024] unit increase	Affymetrix [321114] (imputed)	N
654	chr8	9154064	9154065	rs330081	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	RP11-115J16.1	rs330081-C	NR	2E-11		0.0209187	[0.015-0.027] unit increase	Affymetrix [321114] (imputed)	N
654	chr8	9154064	9154065	rs330081	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	8p23.1	RP11-115J16.1	rs330081-C	NR	3E-9		0.0170474	[0.011-0.023] unit increase	Affymetrix [321169] (imputed)	N
654	chr8	9154064	9154065	rs330081	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	8p23.1	RP11-115J16.1	rs330081-C	NR	2E-8		0.01763	[0.012-0.024] unit increase	Affymetrix [323858] (imputed)	N
654	chr8	9154393	9154394	rs17149709	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	8p23.1	NR	rs17149709-C	NR	8E-34		0.0388	[0.033-0.045] unit increase	Affymetrix [9000000] (imputed)	N
654	chr8	9154393	9154394	rs17149709	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	RP11-115J16.1	rs17149709-A	NR	8E-13		0.012456	[0.009-0.0159] unit decrease	Affymetrix [18485882] (imputed)	N
654	chr8	9154608	9154609	rs330080	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	8p23.1	NR	rs330080-C	NR	2E-12		0.0169	[0.012-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
654	chr8	9157496	9157497	rs118146420	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	8p23.1	NR	rs118146420-G	NR	1E-15		0.0492	[0.037-0.061] unit decrease	Affymetrix [9000000] (imputed)	N
654	chr8	9157496	9157497	rs118146420	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	8p23.1	NR	rs118146420-G	NR	1E-38		0.0797	[0.068-0.092] unit increase	Affymetrix [9000000] (imputed)	N
654	chr8	9157496	9157497	rs118146420	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	8p23.1	NR	rs118146420-G	NR	5E-15		0.0502	[0.038-0.063] unit decrease	Affymetrix [9000000] (imputed)	N
654	chr8	9157496	9157497	rs118146420	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	8p23.1	NR	rs118146420-G	NR	3E-16		0.0525	[0.04-0.065] unit decrease	Affymetrix [9000000] (imputed)	N
654	chr8	9159709	9159710	rs330072	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8p23.1	RP11-115J16.1	rs330072-A	NR	2E-8		0.0168413	[0.011-0.023] unit increase	Affymetrix [321114] (imputed)	N
654	chr8	9159709	9159710	rs330072	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	RP11-115J16.1	rs330072-A	NR	3E-11		0.0216263	[0.015-0.028] unit increase	Affymetrix [321114] (imputed)	N
654	chr8	9159894	9159895	rs330071	24927181	Navarini AA	2014-06-13	Nat Commun	Genome-wide association study identifies three novel susceptibility loci for severe Acne vulgaris.	Acne (severe)	1,893 European ancestry cases, 5,132 European ancestry controls	2,063 European ancestry cases, 1,970 European ancestry controls	8p23.1	ERI1, LOC157273, MFHAS1, MIR597, MIR4660, PPP1R3B, U6, TNKS, BC017578	rs330071-G	0.6458	9E-7		1.23	[1.14-1.33]	Illumina [7300000] (imputed)	N
654	chr8	9161124	9161125	rs34648177	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	8p23.1	NR	rs34648177-A	NR	1E-10		0.0412	[0.029-0.054] unit decrease	Affymetrix [9000000] (imputed)	N
654	chr8	9161124	9161125	rs34648177	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	8p23.1	NR	rs34648177-A	NR	1E-23		0.0641	[0.052-0.077] unit increase	Affymetrix [9000000] (imputed)	N
654	chr8	9161124	9161125	rs34648177	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	8p23.1	NR	rs34648177-A	NR	2E-10		0.0429	[0.03-0.056] unit decrease	Affymetrix [9000000] (imputed)	N
654	chr8	9161124	9161125	rs34648177	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	8p23.1	NR	rs34648177-A	NR	6E-10		0.0414	[0.028-0.055] unit decrease	Affymetrix [9000000] (imputed)	N
654	chr8	9161124	9161125	rs34648177	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	8p23.1	NR	rs34648177-A	NR	2E-10		0.043	[0.03-0.056] unit decrease	Affymetrix [9000000] (imputed)	N
654	chr8	9165379	9165380	rs405001	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	RP11-115J16.1	rs405001-T	NR	2E-9		0.0187233	[0.013-0.025] unit increase	Affymetrix [321114] (imputed)	N
654	chr8	9165653	9165654	rs427731	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	RP11-115J16.1	rs427731-A	NR	3E-9		0.010303	[0.0069-0.0137] unit increase	Affymetrix [18485882] (imputed)	N
654	chr8	9165653	9165654	rs427731	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	8p23.1	NR	rs427731-C	0.632734818911756	2E-13		0.014833495	[0.011-0.019] unit increase	NR [NR]	N
654	chr8	9166531	9166532	rs13251338	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycine levels	114,978 European ancestry individuals	NA	8p23.1		rs13251338-T	0.591469	2E-11		0.0275627	[0.019-0.036] unit decrease	NR [11722792] (imputed)	N
654	chr8	9167241	9167242	rs2054349	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	RP11-115J16.1	rs2054349-A	NR	6E-10		0.010732	[0.0073-0.0141] unit decrease	Affymetrix [18485882] (imputed)	N
654	chr8	9167241	9167242	rs2054349	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	8p23.1	intergenic	rs2054349-A	0.44582999999999995	5E-17		8.397	z score increase	Illumina [18485882] (imputed)	N
654	chr8	9168896	9168897	rs62493791	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8p23.1	RP11-115J16.1	rs62493791-G	NR	9E-12		0.0228453	[0.016-0.029] unit decrease	Affymetrix [321114] (imputed)	N
654	chr8	9168896	9168897	rs62493791	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	8p23.1	RP11-115J16.1	rs62493791-G	NR	2E-11		0.0225478	[0.016-0.029] unit decrease	Affymetrix [321169] (imputed)	N
654	chr8	9173208	9173209	rs7012637	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	8p23.1		rs7012637-G	0.525913	8E-24		0.0399859	[0.032-0.048] unit increase	NR [11722792] (imputed)	N
654	chr8	9173208	9173209	rs7012637	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	8p23.1		rs7012637-G	0.525913	4E-24		0.0396419	[0.032-0.047] unit increase	NR [11722792] (imputed)	N
654	chr8	9173208	9173209	rs7012637	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very small VLDL	115,082 European ancestry individuals	NA	8p23.1		rs7012637-G	0.525913	9E-9		0.0232977	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
654	chr8	9173208	9173209	rs7012637	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	8p23.1		rs7012637-G	0.525903	5E-20		0.0370176	[0.029-0.045] unit increase	NR [11722792] (imputed)	N
654	chr8	9173208	9173209	rs7012637	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	8p23.1		rs7012637-G	0.52591	2E-9		0.024895	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
654	chr8	9173208	9173209	rs7012637	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	8p23.1		rs7012637-G	0.525913	1E-8		0.023191	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
654	chr8	9173208	9173209	rs7012637	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	8p23.1		rs7012637-G	0.525913	5E-17		0.0336204	[0.026-0.041] unit decrease	NR [11722792] (imputed)	N
654	chr8	9173208	9173209	rs7012637	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	8p23.1		rs7012637-G	0.525913	2E-13		0.0291806	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
654	chr8	9173208	9173209	rs7012637	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	8p23.1		rs7012637-G	0.525913	2E-12		0.0287395	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
654	chr8	9173208	9173209	rs7012637	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	8p23.1		rs7012637-G	0.525913	4E-23		0.0391537	[0.031-0.047] unit decrease	NR [11722792] (imputed)	N
654	chr8	9173208	9173209	rs7012637	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	8p23.1		rs7012637-G	0.525913	5E-16		0.0317241	[0.024-0.039] unit decrease	NR [11722792] (imputed)	N
654	chr8	9173208	9173209	rs7012637	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	8p23.1		rs7012637-A	NR	5E-26		0.0224	[0.018-0.027] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
654	chr8	9173208	9173209	rs7012637	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	8p23.1		rs7012637-A	NR	1E-82		0.0451	[0.041-0.05] unit increase	Affymetrix, Illumina [20529698] (imputed)	N
654	chr8	9173208	9173209	rs7012637	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting insulin	16,386 Hispanic individuals	NA	8p23.1	LOC157273	rs7012637-A	0.4986	8E-9		0.0358	[0.024-0.048] unit decrease	Affymetrix, Illumina [26195808] (imputed)	N
654	chr8	9173208	9173209	rs7012637	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	200,622 European ancestry individuals	NA	8p23.1	LOC157273	rs7012637-A	0.4738	1E-24		0.018	[0.015-0.021] unit decrease	Affymetrix, Illumina [34064007] (imputed)	N
654	chr8	9173208	9173209	rs7012637	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	RP11-115J16.1	rs7012637-A	NR	2E-8		0.0175775	[0.011-0.024] unit decrease	Affymetrix [321114] (imputed)	N
654	chr8	9173208	9173209	rs7012637	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8p23.1	NR	rs7012637-A	0.528165	5E-10				Affymetrix, Illumina [23472807] (imputed)	N
654	chr8	9173208	9173209	rs7012637	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	8p23.1	RP11-10A14.4	rs7012637-G	0.526191	3E-21		0.0198643	[0.016-0.024] unit decrease	Affymetrix [NR] (imputed)	N
654	chr8	9173208	9173209	rs7012637	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	8p23.1	intergenic	rs7012637-?	NR	9E-45		0.0362	[0.032-0.041] unit increase	Affymetrix [5701386] (imputed)	N
654	chr8	9173208	9173209	rs7012637	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	8p23.1	NR	rs7012637-G	0.525363	8E-121		0.0474771	[0.043-0.051] unit decrease	NR [NR]	N
654	chr8	9173208	9173209	rs7012637	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in non-diabetics	152,624 European ancestry individuals, 36,369 African American individuals	NA	8p23.1	LOC157273	rs7012637-A	0.446	1E-14		0.421	[0.31-0.53] unit increase	Affymetrix [NR] (imputed)	N
654	chr8	9173208	9173209	rs7012637	30837465	Wittemans LBL	2019-03-05	Nat Commun	Assessing the causal association of glycine with risk of cardio-metabolic diseases.	Glycine levels	80,003 European ancestry individuals	NA	8p23.1	NR	rs7012637-G	0.525	2E-15	(conditional)			Affymetrix, Illumina [NR] (imputed)	N
654	chr8	9173208	9173209	rs7012637	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	148,164 European ancestry individuals	NA	8p23.1	PPP1R3B	rs7012637-A	0.47	3E-36		0.054	[0.046-0.062] unit increase	Affymetrix, Illumina, Perlegen [10019203] (imputed)	N
654	chr8	9173208	9173209	rs7012637	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	148,164 European ancestry individuals	NA	8p23.1	PPP1R3B	rs7012637-A	0.47	3E-35	(BMI-adjusted)	0.05	[0.042-0.058] unit increase	Affymetrix, Illumina, Perlegen [10019203] (imputed)	N
654	chr8	9173357	9173358	rs7012814	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	8p23.1		rs7012814-G	0.525735	3E-24		0.0400463	[0.032-0.048] unit increase	NR [11722792] (imputed)	N
654	chr8	9173357	9173358	rs7012814	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	8p23.1		rs7012814-G	0.525735	8E-15		0.0316411	[0.024-0.04] unit increase	NR [11722792] (imputed)	N
654	chr8	9173357	9173358	rs7012814	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	8p23.1		rs7012814-G	0.525735	1E-22		0.0390298	[0.031-0.047] unit increase	NR [11722792] (imputed)	N
654	chr8	9173357	9173358	rs7012814	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	8p23.1		rs7012814-G	0.525735	1E-20		0.0340209	[0.027-0.041] unit decrease	NR [11722792] (imputed)	N
654	chr8	9173357	9173358	rs7012814	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	8p23.1		rs7012814-G	0.525758	5E-15		0.030145	[0.023-0.038] unit increase	NR [11722792] (imputed)	N
654	chr8	9173357	9173358	rs7012814	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	8p23.1		rs7012814-G	0.525735	7E-16		0.0318459	[0.024-0.04] unit decrease	NR [11722792] (imputed)	N
654	chr8	9173357	9173358	rs7012814	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	8p23.1		rs7012814-G	0.525735	2E-20		0.033733	[0.027-0.041] unit decrease	NR [11722792] (imputed)	N
654	chr8	9173357	9173358	rs7012814	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large HDL particles	115,082 European ancestry individuals	NA	8p23.1		rs7012814-G	0.525735	5E-11		0.0246741	[0.017-0.032] unit decrease	NR [11722792] (imputed)	N
654	chr8	9173357	9173358	rs7012814	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	8p23.1		rs7012814-G	0.525735	3E-20		0.0359151	[0.028-0.044] unit decrease	NR [11722792] (imputed)	N
654	chr8	9173357	9173358	rs7012814	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	8p23.1		rs7012814-G	0.525735	2E-15		0.0295907	[0.022-0.037] unit decrease	NR [11722792] (imputed)	N
654	chr8	9173357	9173358	rs7012814	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	8p23.1		rs7012814-G	0.525735	2E-21		0.0349271	[0.028-0.042] unit decrease	NR [11722792] (imputed)	N
654	chr8	9173357	9173358	rs7012814	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	8p23.1		rs7012814-G	0.525735	2E-19		0.0353457	[0.028-0.043] unit decrease	NR [11722792] (imputed)	N
654	chr8	9173357	9173358	rs7012814	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	8p23.1		rs7012814-G	0.525735	4E-14		0.0284398	[0.021-0.036] unit decrease	NR [11722792] (imputed)	N
654	chr8	9173357	9173358	rs7012814	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	8p23.1		rs7012814-G	0.525735	2E-21		0.0347831	[0.028-0.042] unit decrease	NR [11722792] (imputed)	N
654	chr8	9173357	9173358	rs7012814	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for LDL particles	115,082 European ancestry individuals	NA	8p23.1		rs7012814-G	0.525735	3E-9		0.0240704	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
654	chr8	9173357	9173358	rs7012814	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	8p23.1		rs7012814-G	0.525735	1E-12		0.0262123	[0.019-0.033] unit decrease	NR [11722792] (imputed)	N
654	chr8	9173357	9173358	rs7012814	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	8p23.1		rs7012814-A	NR	9E-24		0.0185	[0.015-0.022] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
654	chr8	9173357	9173358	rs7012814	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cholelithiasis	26,122 European ancestry cases, 461,431 European ancestry controls, 9,305 East Asian ancestry cases, 168,253 East Asian ancestry controls	NA	8p23.1		rs7012814-A	NR	4E-8		0.0503	[0.032-0.068] unit decrease	Affymetrix, Illumina [25844936] (imputed)	N
654	chr8	9173357	9173358	rs7012814	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting insulin	151,013 European ancestry individuals	NA	8p23.1	LOC157273	rs7012814-A	0.4758	8E-30		0.0219	[0.018-0.026] unit decrease	Affymetrix, Illumina [32635793] (imputed)	N
654	chr8	9173357	9173358	rs7012814	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8p23.1	RP11-115J16.1	rs7012814-A	NR	1E-10		0.0184974	[0.013-0.024] unit decrease	Affymetrix [321114] (imputed)	N
654	chr8	9173357	9173358	rs7012814	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	8p23.1	RP11-115J16.1	rs7012814-A	NR	1E-9		0.0174469	[0.012-0.023] unit decrease	Affymetrix [321169] (imputed)	N
654	chr8	9173357	9173358	rs7012814	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	8p23.1	LOC157273	rs7012814-G	0.525986	8E-29		0.0055302	[0.0045-0.0065] unit decrease	Affymetrix [13995440] (imputed)	N
654	chr8	9173357	9173358	rs7012814	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	8p23.1	NR	rs7012814-A	0.474127	2E-12		0.013439	[0.0097-0.0172] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
654	chr8	9173357	9173358	rs7012814	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x long total sleep time interaction (2df test)	at least 2,926 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, at least 7,664 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,906 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 31,986 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 317 East Asian ancestry long sleepers, up to 5,171 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 928 African American controls, 1,301 East Asian ancestry controls, up to 20,961 European ancestry controls, 10,064 Hispanic controls	8p23.1	AC022784.6	rs7012814-?	NR	5E-9		0.01225	[0.0081-0.0164] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
654	chr8	9173357	9173358	rs7012814	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x short total sleep time interaction (2df test)	3,007 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,474 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, up to 11,901 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,567 European ancestry controls, 4,047 Hispanic/Latino controls	up to 221 African American short sleepers, 629 East Asian ancestry short sleepers, up to 9,585 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 2,504 East Asian ancestry controls, up to 38,027 European ancestry controls, 10,061 Hispanic controls	8p23.1	AC022784.6	rs7012814-?	NR	8E-21		0.008035	[0.0061-0.01] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
654	chr8	9173357	9173358	rs7012814	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	8p23.1	LOC157273	rs7012814-A	0.4712	5E-23		0.0025	[0.0017-0.0033] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
654	chr8	9173357	9173358	rs7012814	28107422	de Vries PS	2017-01-20	PLoS One	Comparison of HapMap and 1000 Genomes Reference Panels in a Large-Scale Genome-Wide Association Study.	Fibrinogen levels	91,953 European ancestry individuals (imputed to 1000 Genomes)		8p23.1	PPP1R3B, LOC157273	rs7012814-?	NR	8E-9		0.0061	unit increase	Affymetrix, Illumina [10883314] (imputed)	N
654	chr8	9173357	9173358	rs7012814	26561523	de Vries PS	2015-11-10	Hum Mol Genet	A meta-analysis of 120 246 individuals identifies 18 new loci for fibrinogen concentration.	Fibrinogen levels	120,246 European ancestry individuals	NA	8p23.1	LOC157273	rs7012814-A	0.47	2E-10		0.006	NR unit increase	Affymetrix, Illumina [~ 10700000] (imputed)	N
655	chr8	9176051	9176052	rs330091	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	8p23.1	U6, LOC157273	rs330091-G	0.265538	7E-12	(2-hydroxystearate)	0.177	[0.13-0.23] unit decrease	Illumina [13039987] (imputed)	N
655	chr8	9176051	9176052	rs330091	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	1,509 European ancestry individuals	8p23.1	U6, LOC157273	rs330091-G	0.265538	7E-12	(2-hydroxystearate)	0.177	[0.13-0.23] unit decrease	Illumina [13039987] (imputed)	N
655	chr8	9177731	9177732	rs983309	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	8p23.1	NR	rs983309-G	NR	2E-83		0.0711	[0.064-0.078] unit increase	Affymetrix [9000000] (imputed)	N
655	chr8	9177731	9177732	rs983309	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	8p23.1	NR	rs983309-G	NR	6E-19		0.0343	[0.027-0.042] unit increase	Affymetrix [9000000] (imputed)	N
655	chr8	9177731	9177732	rs983309	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	8p23.1	NR	rs983309-G	NR	5E-12		0.0265	[0.019-0.034] unit increase	Affymetrix [9000000] (imputed)	N
655	chr8	9177731	9177732	rs983309	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	8p23.1	NR	rs983309-G	NR	6E-204		0.1119	[0.1-0.12] unit decrease	Affymetrix [9000000] (imputed)	N
655	chr8	9177731	9177732	rs983309	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	8p23.1	NR	rs983309-G	NR	7E-38		0.0495	[0.042-0.057] unit increase	Affymetrix [9000000] (imputed)	N
655	chr8	9177731	9177732	rs983309	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	8p23.1	NR	rs983309-G	NR	1E-40		0.0491	[0.042-0.056] unit increase	Affymetrix [9000000] (imputed)	N
655	chr8	9177731	9177732	rs983309	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	8p23.1	NR	rs983309-G	NR	7E-91		0.0777	[0.07-0.085] unit increase	Affymetrix [9000000] (imputed)	N
655	chr8	9177731	9177732	rs983309	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	8p23.1	NR	rs983309-G	NR	1E-13		0.0274	[0.02-0.035] unit increase	Affymetrix [9000000] (imputed)	N
655	chr8	9177731	9177732	rs983309	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	8p23.1	NR	rs983309-G	NR	8E-11		0.0238	[0.017-0.031] unit increase	Affymetrix [9000000] (imputed)	N
655	chr8	9177731	9177732	rs983309	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	8p23.1	NR	rs983309-G	NR	2E-11		0.0248	[0.018-0.032] unit decrease	Affymetrix [9000000] (imputed)	N
655	chr8	9177731	9177732	rs983309	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	8p23.1	NR	rs983309-G	NR	4E-35		0.0475	[0.04-0.055] unit increase	Affymetrix [9000000] (imputed)	N
655	chr8	9177731	9177732	rs983309	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	8p23.1	NR	rs983309-G	NR	5E-61		0.0606	[0.053-0.068] unit increase	Affymetrix [9000000] (imputed)	N
655	chr8	9177731	9177732	rs983309	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	8p23.1	NR	rs983309-G	NR	1E-23		0.0384	[0.031-0.046] unit decrease	Affymetrix [9000000] (imputed)	N
655	chr8	9177731	9177732	rs983309	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	8p23.1	NR	rs983309-G	NR	7E-15		0.0287	[0.021-0.036] unit increase	Affymetrix [9000000] (imputed)	N
655	chr8	9177731	9177732	rs983309	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	8p23.1	NR	rs983309-G	NR	3E-13		0.0269	[0.02-0.034] unit decrease	Affymetrix [9000000] (imputed)	N
655	chr8	9177731	9177732	rs983309	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	8p23.1	NR	rs983309-G	NR	8E-21		0.0345	[0.027-0.042] unit increase	Affymetrix [9000000] (imputed)	N
655	chr8	9177731	9177732	rs983309	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	8p23.1	NR	rs983309-G	NR	9E-88		0.0765	[0.069-0.084] unit increase	Affymetrix [9000000] (imputed)	N
655	chr8	9177731	9177732	rs983309	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	8p23.1	NR	rs983309-G	NR	4E-22		0.0356	[0.028-0.043] unit decrease	Affymetrix [9000000] (imputed)	N
655	chr8	9177731	9177732	rs983309	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting insulin	50,404 European ancestry women	NA	8p23.1	PPP1R3B	rs983309-G	0.8482	2E-9		0.031946	[0.022-0.042] unit decrease	Affymetrix, Illumina [8700000] (imputed)	N
655	chr8	9177731	9177732	rs983309	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting insulin	47,806 European ancestry men	NA	8p23.1	PPP1R3B	rs983309-G	0.8482	3E-7		0.028057	[0.017-0.039] unit decrease	Affymetrix, Illumina [8700000] (imputed)	N
655	chr8	9177731	9177732	rs983309	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting insulin	105,056 European ancestry individuals	NA	8p23.1	PPP1R3B	rs983309-G	0.8482	1E-14		0.028512	[0.021-0.036] unit decrease	Affymetrix, Illumina [8700000] (imputed)	N
655	chr8	9177731	9177732	rs983309	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting glucose	73,089 European ancestry women	NA	8p23.1	PPP1R3B	rs983309-G	0.863639	5E-13		0.031906	[0.023-0.041] unit decrease	Affymetrix, Illumina [8700000] (imputed)	N
655	chr8	9177731	9177732	rs983309	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting glucose	67,506 European ancestry men	NA	8p23.1	PPP1R3B	rs983309-G	0.863639	4E-9		0.026715	[0.018-0.036] unit decrease	Affymetrix, Illumina [8700000] (imputed)	N
655	chr8	9177731	9177732	rs983309	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting glucose	151,188 European ancestry individuals	NA	8p23.1	PPP1R3B	rs983309-G	0.863639	2E-21		0.029338	[0.023-0.035] unit decrease	Affymetrix, Illumina [8700000] (imputed)	N
655	chr8	9177731	9177732	rs983309	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	8p23.1	LOC157273	rs983309-?	NR	2E-13	(Gly)	0.08933288	NR unit increase	Illumina [609262]	N
655	chr8	9177731	9177732	rs983309	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	8p23.1	LOC157273	rs983309-?	NR	2E-13	(Gly)	0.095926665	NR unit increase	Illumina [609262]	N
655	chr8	9178267	9178268	rs6984305	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x long total sleep time interaction (2df test)	2,933 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, up to 7,870 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,975 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 32,171 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 616 East Asian ancestry long sleepers, up to 9,486 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 929 African American controls, 2,517 East Asian ancestry controls, up to 38,126 European ancestry controls, 10,063 Hispanic controls	8p23.1	AC022784.6	rs6984305-?	NR	3E-28		0.01312	[0.011-0.016] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
655	chr8	9178267	9178268	rs6984305	31666285	Olafsson S	2019-10-30	Cancer Epidemiol Biomarkers Prev	Common and rare sequence variants influencing tumor biomarkers in blood.	Serum alkaline phosphatase levels	162,774 Icelandic ancestry individuals	NA	8p23.1	intergenic	rs6984305-A	0.084	2E-16		0.06	[0.05-0.08] unit increase	Illumina [NR] (imputed)	N
655	chr8	9178267	9178268	rs6984305	22001757	Chambers JC	2011-10-16	Nat Genet	Genome-wide association study identifies loci influencing concentrations of liver enzymes in plasma.	Liver enzyme levels (alkaline phosphatase)	Up to 52,350 European ancestry individuals, up to 8,739 Indian Asian ancestry individuals	NA	8p23.1	PPP1R3B	rs6984305-A	0.11	2E-10		2.7	[1.10-4.40] % increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
655	chr8	9179297	9179298	rs2126264	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	8p23.1	LOC157273	rs2126264-G	0.109585	8E-16		0.0253925	[0.019-0.032] unit increase	NR [13737936] (imputed)	N
655	chr8	9181394	9181395	rs2169387	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large HDL	115,082 European ancestry individuals	NA	8p23.1		rs2169387-A	0.100004	5E-21		0.0571918	[0.045-0.069] unit decrease	NR [11722792] (imputed)	N
655	chr8	9181394	9181395	rs2169387	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	8p23.1		rs2169387-A	0.100009	3E-11		0.0407725	[0.029-0.053] unit increase	NR [11722792] (imputed)	N
655	chr8	9181394	9181395	rs2169387	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	8p23.1		rs2169387-A	0.100004	7E-35		0.0755834	[0.064-0.088] unit decrease	NR [11722792] (imputed)	N
655	chr8	9181394	9181395	rs2169387	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	8p23.1		rs2169387-A	0.100004	4E-21		0.0571015	[0.045-0.069] unit decrease	NR [11722792] (imputed)	N
655	chr8	9181394	9181395	rs2169387	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	8p23.1		rs2169387-G	NR	9E-48		0.0583	[0.05-0.066] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
655	chr8	9181394	9181395	rs2169387	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x short total sleep time interaction (2df test)	2,974 African American short sleepers, 365 Chinese ancestry short sleepers, 110 Asian ancestry short sleepers, at least 8,230 European ancestry short sleepers, 1,079 Hispanic/Latino short sleepers, 11,801 African American controls, 1,425 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,097 European ancestry controls, 4,023 Hispanic/Latino controls	at least 214 African American short sleepers, 629 East Asian ancestry short sleepers, up to 6,761 European ancestry short sleepers, 2,473 Hispanic short sleepers, at least 913 African American controls, 2,504 East Asian ancestry controls, up to 26,764 European ancestry controls, 9,854 Hispanic controls	8p23.1	AC022784.6	rs2169387-?	NR	6E-10		1.482	[1.03-1.93] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
655	chr8	9181394	9181395	rs2169387	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x short total sleep time interaction (2df test)	3,007 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,474 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, up to 11,901 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,567 European ancestry controls, 4,047 Hispanic/Latino controls	up to 221 African American short sleepers, 629 East Asian ancestry short sleepers, up to 9,585 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 2,504 East Asian ancestry controls, up to 38,027 European ancestry controls, 10,061 Hispanic controls	8p23.1	AC022784.6	rs2169387-?	NR	3E-39		0.01546	[0.013-0.018] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
655	chr8	9181394	9181395	rs2169387	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	8p23.1	NR	rs2169387-?	NR	4E-6		0.02580566	[0.015-0.037] unit decrease	Illumina [31978265] (imputed)	N
655	chr8	9181394	9181395	rs2169387	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	8p23.1	NR	rs2169387-?	NR	8E-8		2.572229	[1.63-3.51] unit increase	Illumina [32003504] (imputed)	N
655	chr8	9181394	9181395	rs2169387	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	8p23.1	NR	rs2169387-?	NR	5E-18		1.314715	[1.02-1.61] unit increase	Illumina [31978362] (imputed)	N
655	chr8	9181394	9181395	rs2169387	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	8p23.1	intergenic	rs2169387-A	0.1311	7E-39		0.053	[0.045-0.061] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
655	chr8	9181394	9181395	rs2169387	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	8p23.1	intergenic	rs2169387-A	0.1311	3E-25		0.0422	[0.034-0.05] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
655	chr8	9181394	9181395	rs2169387	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p23.1	NR	rs2169387-A	NR	7E-8		0.034	unit increase	Affymetrix [at least 7091467] (imputed)	N
655	chr8	9181394	9181395	rs2169387	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p23.1	NR	rs2169387-A	0.096	9E-6	(EA)	0.031	unit increase	Affymetrix [at least 7091467] (imputed)	N
655	chr8	9181394	9181395	rs2169387	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p23.1	NR	rs2169387-A	NR	3E-22		0.068	unit decrease	Affymetrix [at least 7091467] (imputed)	N
655	chr8	9181394	9181395	rs2169387	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p23.1	NR	rs2169387-A	0.168	1E-7	(Hispanic)	0.105	unit decrease	Affymetrix [at least 7091467] (imputed)	N
655	chr8	9181394	9181395	rs2169387	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p23.1	NR	rs2169387-A	0.096	8E-17	(EA)	0.065	unit decrease	Affymetrix [at least 7091467] (imputed)	N
655	chr8	9181394	9181395	rs2169387	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p23.1	NR	rs2169387-A	NR	8E-16		0.058	unit decrease	Affymetrix [at least 7091467] (imputed)	N
655	chr8	9181394	9181395	rs2169387	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p23.1	NR	rs2169387-A	0.168	1E-6	(Hispanic)	0.097	unit decrease	Affymetrix [at least 7091467] (imputed)	N
655	chr8	9181394	9181395	rs2169387	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p23.1	NR	rs2169387-A	0.096	7E-12	(EA)	0.055	unit decrease	Affymetrix [at least 7091467] (imputed)	N
655	chr8	9181394	9181395	rs2169387	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p23.1	NR	rs2169387-A	NR	2E-43		0.079	unit decrease	Affymetrix [at least 7091467] (imputed)	N
655	chr8	9181394	9181395	rs2169387	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p23.1	NR	rs2169387-A	0.168	1E-8	(Hispanic)	0.094	unit decrease	Affymetrix [at least 7091467] (imputed)	N
655	chr8	9181394	9181395	rs2169387	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p23.1	NR	rs2169387-A	0.096	5E-33	(EA)	0.076	unit decrease	Affymetrix [at least 7091467] (imputed)	N
655	chr8	9181394	9181395	rs2169387	27005778	Kettunen J	2016-03-23	Nat Commun	Genome-wide study for circulating metabolites identifies 62 loci and reveals novel systemic effects of LPA.	Metabolite levels (small molecules and protein measures)	2,118 Erasmus Rucphen (founder/genetic isolate), 22,807 European ancestry individuals	NA	8p23.1	PPP1R3B	rs2169387-G	0.87	1E-16	(Glycine)	0.13	[0.091-0.169] unit decrease	Affymetrix, Illumina, Perlegen [12133295] (imputed)	N
655	chr8	9181394	9181395	rs2169387	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	LDL cholesterol	up 62,166 European ancestry individuals	NA	8p23.1	PPP1R3B	rs2169387-G	0.89	3E-16		0.083	[0.063-0.103] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
655	chr8	9181610	9181611	rs2126263	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	High density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	8p23.1	LOC157273	rs2126263-?		7E-20		0.0855	[0.067-0.104] unit decrease	Illumina [31500000] (imputed)	N
655	chr8	9181610	9181611	rs2126263	31070104	Jia Q	2019-05-09	J Am Heart Assoc	Genetic Determinants of Circulating Glycine Levels and Risk of Coronary Artery Disease.	Glycine levels	30,118 European ancestry individuals	NA	8p23.1	PPP1R3B, LOC157273	rs2126263-G	0.151966	6E-44		0.162543	[0.14-0.19] unit increase	Affymetrix, Illumina [7487927] (imputed)	N
655	chr8	9181610	9181611	rs2126263	31070104	Jia Q	2019-05-09	J Am Heart Assoc	Genetic Determinants of Circulating Glycine Levels and Risk of Coronary Artery Disease.	Glycine levels	19,112 European ancestry male individuals	NA	8p23.1	PPP1R3B, LOC157273	rs2126263-G	0.151966	5E-38		0.183572	[0.16-0.21] unit increase	Affymetrix, Illumina [7487927] (imputed)	N
655	chr8	9181610	9181611	rs2126263	31070104	Jia Q	2019-05-09	J Am Heart Assoc	Genetic Determinants of Circulating Glycine Levels and Risk of Coronary Artery Disease.	Glycine levels	11,006 European ancestry female individuals	NA	8p23.1	PPP1R3B, LOC157273	rs2126263-G	0.151966	4E-11		0.13079	[0.092-0.17] unit increase	Affymetrix, Illumina [7487927] (imputed)	N
655	chr8	9182564	9182565	rs9650618	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	8p23.1	RP11-115J16.1	rs9650618-T	NR	5E-9		0.0198903	[0.013-0.027] unit increase	Affymetrix [323858] (imputed)	N
655	chr8	9183097	9183102	rs199922514	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	8p23.1		rs199922514-A	0.0911157	4E-11		0.0472251	[0.033-0.061] unit decrease	NR [11722792] (imputed)	N
655	chr8	9183097	9183102	rs199922514	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	8p23.1		rs199922514-A	0.0911157	3E-10		0.0450005	[0.031-0.059] unit increase	NR [11722792] (imputed)	N
655	chr8	9183097	9183102	rs199922514	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Acetoacetate levels	115,079 European ancestry individuals	NA	8p23.1		rs199922514-A	0.0911138	5E-11		0.0469937	[0.033-0.061] unit decrease	NR [11722792] (imputed)	N
655	chr8	9183102	9183102	rs111675407	34951656	Downie CG	2021-12-24	Diabetologia	Multi-ethnic GWAS and fine-mapping of glycaemic traits identify novel loci in the PAGE Study.	Fasting glucose adjusted for BMI	52,211 European ancestry, African American or Afro-Caribbean, Hispanic or Latin American, Asian ancestry, Other ancestry, Native American ancestry individuals	NA	8p23.1		rs111675407-A	0.1365	2E-9		0.0589	[0.04-0.078] unit increase	Affymetrix, Illumina [29259056] (imputed)	N
655	chr8	9183102	9183102	rs111675407	34951656	Downie CG	2021-12-24	Diabetologia	Multi-ethnic GWAS and fine-mapping of glycaemic traits identify novel loci in the PAGE Study.	Fasting glucose adjusted for BMI	19,745 European ancestry individuals	NA	8p23.1		rs111675407-A	0.0873	1E-7		0.0957	[0.06-0.131] unit increase	Affymetrix, Illumina [29259056] (imputed)	N
655	chr8	9183102	9183102	rs111675407	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	8p23.1		rs111675407-AAGAAGAAAGGG	NR	3E-239		0.1302	[0.12-0.14] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
655	chr8	9183103	9183103	rs67182686	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	8p23.1	NR	rs67182686-I	0.908343	3E-14		0.026646	[0.02-0.034] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
655	chr8	9183338	9183339	rs11774381	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	RP11-115J16.1	rs11774381-T	NR	2E-10		0.0221677	[0.015-0.029] unit increase	Affymetrix [321114] (imputed)	N
655	chr8	9183357	9183358	rs9987289	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total phospholipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	8p23.1		rs9987289-A	0.0908309	2E-38		0.08849	[0.075-0.102] unit decrease	NR [11722792] (imputed)	N
655	chr8	9183357	9183358	rs9987289	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholines levels	115,006 European ancestry individuals	NA	8p23.1		rs9987289-A	0.0908387	2E-42		0.0921117	[0.079-0.105] unit decrease	NR [11722792] (imputed)	N
655	chr8	9183357	9183358	rs9987289	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphoglycerides levels	115,006 European ancestry individuals	NA	8p23.1		rs9987289-A	0.0908387	2E-40		0.0902857	[0.077-0.104] unit decrease	NR [11722792] (imputed)	N
655	chr8	9183357	9183358	rs9987289	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-3 fatty acid levels	115,006 European ancestry individuals	NA	8p23.1		rs9987289-A	0.0908387	3E-15		0.0544031	[0.041-0.068] unit decrease	NR [11722792] (imputed)	N
655	chr8	9183357	9183358	rs9987289	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Docosahexaenoic acid levels	115,006 European ancestry individuals	NA	8p23.1		rs9987289-A	0.0908387	1E-16		0.0564948	[0.043-0.07] unit decrease	NR [11722792] (imputed)	N
655	chr8	9183357	9183358	rs9987289	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	8p23.1		rs9987289-A	0.0908309	1E-17		0.0614115	[0.047-0.076] unit decrease	NR [11722792] (imputed)	N
655	chr8	9183357	9183358	rs9987289	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	3-Hydroxybutyrate levels	113,594 European ancestry individuals	NA	8p23.1		rs9987289-A	0.0908235	1E-19		0.0648127	[0.051-0.079] unit decrease	NR [11722792] (imputed)	N
655	chr8	9183357	9183358	rs9987289	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	8p23.1		rs9987289-G	NR	7E-65		0.0666	[0.059-0.074] unit increase	Affymetrix, Illumina [20536134] (imputed)	N
655	chr8	9183357	9183358	rs9987289	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	8p23.1		rs9987289-G	NR	1E-27		0.0437	[0.036-0.052] unit increase	Affymetrix, Illumina [20521447] (imputed)	N
655	chr8	9183357	9183358	rs9987289	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	8p23.1		rs9987289-G	NR	1E-115		0.0888	[0.081-0.096] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
655	chr8	9183357	9183358	rs9987289	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	8p23.1		rs9987289-G	NR	3E-26		0.0442	[0.036-0.052] unit decrease	Affymetrix, Illumina [20535873] (imputed)	N
655	chr8	9183357	9183358	rs9987289	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	19,247 Hispanic individuals	NA	8p23.1	LOC157273	rs9987289-A	0.2016	1E-7		0.0359	[0.023-0.049] unit increase	Affymetrix, Illumina [28177426] (imputed)	N
655	chr8	9183357	9183358	rs9987289	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Waist-hip ratio and LDL-C (pairwise)	388,392 European ancestry individuals, 11,333 East Asian, South Asian, Hispanic and African American ancestry individuals	NA	8p23.1	PPP1R3B-TNKS	rs9987289-G	0.9254	2E-27				Affymetrix, Illumina [2331072] (imputed)	N
655	chr8	9183357	9183358	rs9987289	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	8p23.1	RP11-115J16.1	rs9987289-G	0.9086461	1E-13		0.028734474	[0.021-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
655	chr8	9183357	9183358	rs9987289	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	8p23.1	RP11-10A14.4	rs9987289-A	0.0911903	5E-36		0.0454194	[0.038-0.053] unit decrease	Affymetrix [NR] (imputed)	N
655	chr8	9183357	9183358	rs9987289	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	8p23.1	RP11-10A14.4	rs9987289-A	0.0912604	7E-155		0.08734	[0.081-0.094] unit decrease	Affymetrix [NR] (imputed)	N
655	chr8	9183357	9183358	rs9987289	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	8p23.1	RP11-10A14.4	rs9987289-A	0.0912651	9E-139		0.0853006	[0.079-0.092] unit decrease	Affymetrix [NR] (imputed)	N
655	chr8	9183357	9183358	rs9987289	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	8p23.1	NR	rs9987289-G	0.9078705	1E-26		0.021619	[0.017-0.026] unit increase	Affymetrix [16585854] (imputed)	N
655	chr8	9183357	9183358	rs9987289	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	8p23.1	NR	rs9987289-G	0.9078705	2E-19		0.0215197	[0.017-0.026] unit increase	Affymetrix [16585866] (imputed)	N
655	chr8	9183357	9183358	rs9987289	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	8p23.1	NR	rs9987289-A	0.0917274	2E-13		0.0252994	[0.019-0.032] unit increase	Affymetrix [16583148] (imputed)	N
655	chr8	9183357	9183358	rs9987289	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	8p23.1	NR	rs9987289-A	0.0920709	6E-15		0.0336644	[0.025-0.042] unit increase	Affymetrix [16585745] (imputed)	N
655	chr8	9183357	9183358	rs9987289	31589552	Lind L	2019-10-07	Metab Syndr Relat Disord	Genome-Wide Association Study of the Metabolic Syndrome in UK Biobank.	Metabolic syndrome	291,107 European ancestry individuals	NA	8p23.1	LOC157273	rs9987289-A	0.0919748	3E-15		0.0873883	[0.066-0.109] unit increase	Affymetrix [9463307] (imputed)	N
655	chr8	9183357	9183358	rs9987289	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	8p23.1	NR	rs9987289-?	NR	3E-6		0.02565648	[0.015-0.036] unit decrease	Illumina [31978265] (imputed)	N
655	chr8	9183357	9183358	rs9987289	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	8p23.1	NR	rs9987289-?	NR	3E-7		2.423919	[1.49-3.36] unit increase	Illumina [32003504] (imputed)	N
655	chr8	9183357	9183358	rs9987289	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	8p23.1	NR	rs9987289-?	NR	8E-18		1.293496	[1-1.59] unit increase	Illumina [31978362] (imputed)	N
655	chr8	9183357	9183358	rs9987289	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	C-reactive protein levels	8,349 African American individuals, 15,912 Hispanic/Latino individuals, 1,811 Asian ancestry individuals, 1,777 Native Hawaiian ancestry individuals, 574 Native American ancestry individuals, 97 individuals	NA	8p23.1	NR	rs9987289-?	NR	6E-14		0.08424565	[0.062-0.106] unit increase	Illumina [30861016] (imputed)	N
655	chr8	9183357	9183358	rs9987289	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	LDL cholesterol levels	up to 23,353 African ancestry individuals, 13,171 Asian ancestry individuals, up to 82,522 European ancestry individuals, 6,646 Hispanic individuals	NA	8p23.1		rs9987289-A	0.115	1E-18		2.3326	[1.82-2.85] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
655	chr8	9183357	9183358	rs9987289	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	HDL cholesterol levels	up to 23,761 African ancestry individuals, 13,171 Asian ancestry individuals, up to 90,272 European ancestry individuals, 6,620 Hispanic individuals	NA	8p23.1		rs9987289-A	0.1176	1E-20		0.0168	[0.013-0.02] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
655	chr8	9183357	9183358	rs9987289	30837465	Wittemans LBL	2019-03-05	Nat Commun	Assessing the causal association of glycine with risk of cardio-metabolic diseases.	Glycine levels	80,003 European ancestry individuals	NA	8p23.1	LOC157273	rs9987289-A	0.1	2E-49		0.124	[0.1-0.14] unit increase	Affymetrix, Illumina [NR] (imputed)	N
655	chr8	9183357	9183358	rs9987289	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p23.1	NR	rs9987289-A	NR	2E-7		0.034	unit increase	Affymetrix [at least 7091467] (imputed)	N
655	chr8	9183357	9183358	rs9987289	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p23.1	NR	rs9987289-A	NR	2E-23		0.073	unit decrease	Affymetrix [at least 7091467] (imputed)	N
655	chr8	9183357	9183358	rs9987289	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p23.1	NR	rs9987289-A	0.163	9E-8	(Hispanic)	0.107	unit decrease	Affymetrix [at least 7091467] (imputed)	N
655	chr8	9183357	9183358	rs9987289	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p23.1	NR	rs9987289-A	0.087	1E-17	(EA)	0.07	unit decrease	Affymetrix [at least 7091467] (imputed)	N
655	chr8	9183357	9183358	rs9987289	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p23.1	NR	rs9987289-A	NR	3E-16		0.061	unit decrease	Affymetrix [at least 7091467] (imputed)	N
655	chr8	9183357	9183358	rs9987289	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p23.1	NR	rs9987289-A	0.163	2E-6	(Hispanic)	0.096	unit decrease	Affymetrix [at least 7091467] (imputed)	N
655	chr8	9183357	9183358	rs9987289	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p23.1	NR	rs9987289-A	0.087	3E-12	(EA)	0.058	unit decrease	Affymetrix [at least 7091467] (imputed)	N
655	chr8	9183357	9183358	rs9987289	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p23.1	NR	rs9987289-A	NR	2E-45		0.084	unit decrease	Affymetrix [at least 7091467] (imputed)	N
655	chr8	9183357	9183358	rs9987289	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p23.1	NR	rs9987289-A	0.163	3E-9	(Hispanic)	0.098	unit decrease	Affymetrix [at least 7091467] (imputed)	N
655	chr8	9183357	9183358	rs9987289	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p23.1	NR	rs9987289-A	0.087	5E-35	(EA)	0.082	unit decrease	Affymetrix [at least 7091467] (imputed)	N
655	chr8	9183357	9183358	rs9987289	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Total cholesterol levels	32,576 East Asian ancestry individuals, 187,365 European ancestry individuals	10,855 Chinese ancestry individuals	8p23.1	PPP1R3B	rs9987289-A	0.0752	1E-34	(Trans-ethnic initial)	0.0842	[0.072-0.097] unit decrease (EA Beta values)	Affymetrix, Illumina [up to 1900000] (imputed)	N
655	chr8	9183357	9183358	rs9987289	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	LDL cholesterol levels	32,285 East Asian ancestry individuals, 173,082 European ancestry individuals	8,478 Chinese ancestry individuals	8p23.1	PPP1R3B	rs9987289-A	0.0752	1E-22	(Trans-ethnic initial)	0.0714	[0.058-0.084] unit decrease (EA Beta value)	Affymetrix, Illumina [~ 1900000] (imputed)	N
655	chr8	9183357	9183358	rs9987289	27286809	Ligthart S	2016-06-10	BMC Genomics	Bivariate genome-wide association study identifies novel pleiotropic loci for lipids and inflammation.	C-reactive protein levels or triglyceride levels (pleiotropy)	65,000 individuals (C-reactive protein), 96,598 individuals (triglycerides)	NA	8p23.1	PPP1R3B	rs9987289-A	NR	3E-14				NR [25015711] (imputed)	N
655	chr8	9183357	9183358	rs9987289	27286809	Ligthart S	2016-06-10	BMC Genomics	Bivariate genome-wide association study identifies novel pleiotropic loci for lipids and inflammation.	C-reactive protein levels or LDL-cholesterol levels (pleiotropy)	65,000 individuals (C-reactive protein), 95,454 individuals (LDL-cholesterol)	NA	8p23.1	PPP1R3B	rs9987289-A	NR	2E-24				NR [2501749] (imputed)	N
655	chr8	9183357	9183358	rs9987289	27286809	Ligthart S	2016-06-10	BMC Genomics	Bivariate genome-wide association study identifies novel pleiotropic loci for lipids and inflammation.	C-reactive protein levels or HDL-cholesterol levels (pleiotropy)	65,000 individuals (C-reactive protein), 99,900 individuals (HDL-cholesterol)	NA	8p23.1	PPP1R3B	rs9987289-A	NR	1E-39				NR [2501543] (imputed)	N
655	chr8	9183357	9183358	rs9987289	26433129	Tin A	2015-10-03	Diabet Med	GCKR and PPP1R3B identified as genome-wide significant loci for plasma lactate: the Atherosclerosis Risk in Communities (ARIC) study.	Plasma lactate levels	6,901 European ancestry individuals	1,671 African American individuals	8p23.1	PPP1R3B, LOC157273	rs9987289-A	0.09	2E-7		0.05	[NR] unit increase	Affymetrix [~ 38000000] (imputed)	N
655	chr8	9183357	9183358	rs9987289	26433129	Tin A	2015-10-03	Diabet Med	GCKR and PPP1R3B identified as genome-wide significant loci for plasma lactate: the Atherosclerosis Risk in Communities (ARIC) study.	Plasma lactate levels	6,901 European ancestry individuals	1,671 African American individuals	8p23.1	LOC157273, PPP1R3B	rs9987289-A	0.09	2E-9	(EA)	0.06	[0.040-0.080] unit increase	Affymetrix [~ 38000000] (imputed)	N
655	chr8	9183357	9183358	rs9987289	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	Cholesterol, total	up to 62,166 European ancestry individuals	NA	8p23.1	PPP1R3B	rs9987289-G	0.9	1E-21		0.097	[0.077-0.117] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
655	chr8	9183357	9183358	rs9987289	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	8p23.1	PPP1R3B	rs9987289-A	0.10	9E-24		0.071	[NR] unit decrease	NR [NR] (imputed)	N
655	chr8	9183357	9183358	rs9987289	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	8p23.1	PPP1R3B	rs9987289-A	0.1	2E-41		0.082	[NR] unit decrease	NR [NR] (imputed)	N
655	chr8	9183357	9183358	rs9987289	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	8p23.1	PPP1R3B	rs9987289-A	0.10	2E-36		0.084	[NR] unit decrease	NR [NR] (imputed)	N
655	chr8	9183357	9183358	rs9987289	21386085	Kraja AT	2011-03-08	Diabetes	A bivariate genome-wide approach to metabolic syndrome: STAMPEED consortium.	Metabolic syndrome (bivariate traits)	22,161 European ancestry individuals	NA	8p23.1	LOC100129150	rs9987289-A	NR	4E-8	(HDLC-WC)	0.24	[0.16-0.32] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
655	chr8	9183357	9183358	rs9987289	21386085	Kraja AT	2011-03-08	Diabetes	A bivariate genome-wide approach to metabolic syndrome: STAMPEED consortium.	HDL Cholesterol - Triglycerides (HDLC-TG)	22,161 European ancestry individuals	NA	8p23.1	LOC100129150	rs9987289-A	NR	1E-8		0.25	[0.17-0.33] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
655	chr8	9183357	9183358	rs9987289	21300955	Dehghan A	2011-02-07	Circulation	Meta-analysis of genome-wide association studies in >80 000 subjects identifies multiple loci for C-reactive protein levels.	C-reactive protein levels	63,678 European ancestry individuals 1,792 Erasmus Rucphen individuals, 715 Orcadian individuals	16,540 European ancestry individuals	8p23.1	PPP1R3B	rs9987289-A	NR	3E-13		0.069	[0.05-0.09] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
655	chr8	9183357	9183358	rs9987289	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	LDL cholesterol	95,454 European ancestry individuals	NA	8p23.1	PPP1R3B	rs9987289-T	0.1	7E-15		2.22	[1.65-2.79] mg/dL decrease	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
655	chr8	9183357	9183358	rs9987289	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	HDL cholesterol	99,900 European ancestry individuals	NA	8p23.1	PPP1R3B	rs9987289-A	0.09	6E-25		1.21	[0.96-1.46] mg/dL decrease	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
655	chr8	9183357	9183358	rs9987289	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	Cholesterol, total	100,184 European ancestry individuals	NA	8p23.1	PPP1R3B	rs9987289-T	0.1	9E-24		3.14	[2.51-3.77] mg/dL decrease	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
655	chr8	9183595	9183596	rs4841132	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	8p23.1		rs4841132-A	0.0908439	2E-19		0.0630847	[0.049-0.077] unit increase	NR [11722792] (imputed)	N
655	chr8	9183595	9183596	rs4841132	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Sphingomyelin levels	115,006 European ancestry individuals	NA	8p23.1		rs4841132-A	0.0908474	2E-38		0.0874304	[0.074-0.101] unit decrease	NR [11722792] (imputed)	N
655	chr8	9183595	9183596	rs4841132	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	8p23.1		rs4841132-A	0.0908439	2E-25		0.0733967	[0.06-0.087] unit increase	NR [11722792] (imputed)	N
655	chr8	9183595	9183596	rs4841132	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	8p23.1		rs4841132-A	0.0908439	8E-20		0.0622798	[0.049-0.076] unit increase	NR [11722792] (imputed)	N
655	chr8	9183595	9183596	rs4841132	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in IDL	115,082 European ancestry individuals	NA	8p23.1		rs4841132-A	0.0908439	3E-28		0.0797384	[0.066-0.094] unit increase	NR [11722792] (imputed)	N
655	chr8	9183595	9183596	rs4841132	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small HDL particles	115,082 European ancestry individuals	NA	8p23.1		rs4841132-A	0.0908439	7E-50		0.107182	[0.093-0.121] unit decrease	NR [11722792] (imputed)	N
655	chr8	9183595	9183596	rs4841132	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	8p23.1		rs4841132-A	0.0908471	4E-24		0.0727166	[0.059-0.087] unit decrease	NR [11722792] (imputed)	N
655	chr8	9183595	9183596	rs4841132	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in IDL	115,082 European ancestry individuals	NA	8p23.1		rs4841132-A	0.0908439	6E-26		0.0738115	[0.06-0.088] unit decrease	NR [11722792] (imputed)	N
655	chr8	9183595	9183596	rs4841132	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small HDL	115,082 European ancestry individuals	NA	8p23.1		rs4841132-A	0.0908439	6E-53		0.1107	[0.097-0.125] unit decrease	NR [11722792] (imputed)	N
655	chr8	9183595	9183596	rs4841132	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	8p23.1		rs4841132-A	0.0908439	7E-24		0.0705027	[0.057-0.084] unit decrease	NR [11722792] (imputed)	N
655	chr8	9183595	9183596	rs4841132	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	8p23.1		rs4841132-A	0.0908439	8E-24		0.0704046	[0.057-0.084] unit decrease	NR [11722792] (imputed)	N
655	chr8	9183595	9183596	rs4841132	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small HDL	115,082 European ancestry individuals	NA	8p23.1		rs4841132-A	0.0908439	3E-54		0.11177	[0.098-0.126] unit decrease	NR [11722792] (imputed)	N
655	chr8	9183595	9183596	rs4841132	35023831	Chong M	2022-01-13	Elife	GWAS and ExWAS of blood Mitochondrial DNA copy number identifies 71 loci and highlights a potential causal role in dementia.	Mitochondrial DNA copy number	395,718 British, Irish, Other White, South Asian, African ancestry individuals	NA	8p23.1	NR	rs4841132-G	0.906749	7E-9		0.0212	[0.014-0.028] unit decrease	Affymetrix [23037915] (imputed)	N
655	chr8	9183595	9183596	rs4841132	34951656	Downie CG	2021-12-24	Diabetologia	Multi-ethnic GWAS and fine-mapping of glycaemic traits identify novel loci in the PAGE Study.	Glycated haemoglobin HbA1c levels adjusted for BMI	9,228 European ancestry individuals	NA	8p23.1		rs4841132-A	0.0863	1E-6		0.0886	[0.053-0.124] unit increase	Affymetrix, Illumina [23060038] (imputed)	N
655	chr8	9183595	9183596	rs4841132	34951656	Downie CG	2021-12-24	Diabetologia	Multi-ethnic GWAS and fine-mapping of glycaemic traits identify novel loci in the PAGE Study.	Fasting insulin adjusted for BMI	48,395 European ancestry, African American or Afro-Caribbean, Hispanic or Latin American, Asian ancestry, Other ancestry, Native American ancestry individuals	NA	8p23.1		rs4841132-A	0.1212	9E-11		0.0676	[0.047-0.088] unit increase	Affymetrix, Illumina [28462191] (imputed)	N
655	chr8	9183595	9183596	rs4841132	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	8p23.1		rs4841132-G	NR	5E-43		0.0583	[0.05-0.067] unit increase	Affymetrix, Illumina [20528270] (imputed)	N
655	chr8	9183595	9183596	rs4841132	33730874	Said MA	2021-03-18	Arterioscler Thromb Vasc Biol	Genome-Wide Association Study and Identification of a Protective Missense Variant on Lipoprotein(a) Concentration: Protective Missense Variant on Lipoprotein(a) Concentration.	Lipoprotein (a) levels	348,591 European ancestry individuals, 6,000 African ancestry individuals, 9,116 Asian ancestry individuals, 7,505 individuals		8p23.1	PPP1R3B	rs4841132-A	NR	1E-10		0.01529	[0.0083-0.0223] nmol/l decrease	NR [19000000] (imputed)	N
655	chr8	9183595	9183596	rs4841132	33385171	Hagg S	2020-12-31	Hum Genet	Deciphering the genetic and epidemiological landscape of mitochondrial DNA abundance.	Mitochondrial DNA levels	295,150 European ancestry individuals	NA	8p23.1	NR	rs4841132-A	0.07356	3E-9		0.0264795	[0.018-0.035] unit increase	Affymetrix [3505788] (imputed)	N
655	chr8	9183595	9183596	rs4841132	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Total cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	8p23.1	LOC157273	rs4841132-?		2E-18		0.0794	[0.062-0.097] unit increase	Illumina [31500000] (imputed)	N
655	chr8	9183595	9183596	rs4841132	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Serum alkaline phosphatase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	8p23.1	LOC157273	rs4841132-?		5E-20		0.0948	[0.075-0.115] unit decrease	Illumina [31500000] (imputed)	N
655	chr8	9183595	9183596	rs4841132	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Low density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	8p23.1	LOC157273	rs4841132-?		8E-12		0.0639	[0.046-0.082] unit increase	Illumina [31500000] (imputed)	N
655	chr8	9183595	9183596	rs4841132	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	8p23.1	LOC157273	rs4841132-A	0.174096	1E-13	(2-hydroxypalmitate)	0.224	[0.17-0.28] unit decrease	Illumina [13039987] (imputed)	N
655	chr8	9183595	9183596	rs4841132	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	1,509 European ancestry individuals	8p23.1	LOC157273	rs4841132-A	0.174096	1E-13	(2-hydroxypalmitate)	0.224	[0.17-0.28] unit decrease	Illumina [13039987] (imputed)	N
655	chr8	9183595	9183596	rs4841132	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	8p23.1	RP11-115J16.1	rs4841132-G	0.9087242	1E-10		0.025517503	[0.018-0.033] unit increase	Affymetrix [93095623] (imputed)	N
655	chr8	9183595	9183596	rs4841132	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8p23.1	NR	rs4841132-G	0.923831	7E-14				Affymetrix, Illumina [24332387] (imputed)	N
655	chr8	9183595	9183596	rs4841132	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	8p23.1		rs4841132-?	NR	2E-9	(conditional)	0.0216774	[0.015-0.029] unit decrease	NR [6912294] (imputed)	N
655	chr8	9183595	9183596	rs4841132	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	8p23.1	NR	rs4841132-?	NR	3E-6		0.02802803	[0.016-0.04] unit decrease	Illumina [31978265] (imputed)	N
655	chr8	9183595	9183596	rs4841132	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	8p23.1	NR	rs4841132-?	NR	1E-8		2.924063	[1.92-3.92] unit increase	Illumina [32003504] (imputed)	N
655	chr8	9183595	9183596	rs4841132	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	8p23.1	NR	rs4841132-?	NR	8E-21		1.507643	[1.19-1.82] unit increase	Illumina [31978362] (imputed)	N
655	chr8	9183595	9183596	rs4841132	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Fasting blood insulin	5,525 African American individuals, 12,687 Hispanic/Latino individuals, 1,547 Asian ancestry individuals, 1,397 Native Hawaiian ancestry individuals, 395 Native American ancestry individuals	NA	8p23.1	NR	rs4841132-?	NR	1E-6		0.06901952	[0.041-0.097] unit decrease	Illumina [28840767] (imputed)	N
655	chr8	9183595	9183596	rs4841132	30940813	Kranzler HR	2019-04-02	Nat Commun	Genome-wide association study of alcohol consumption and use disorder in 274,424 individuals from multiple populations.	Alcohol use disorder (consumption score)	200,680 European American individuals, 56,495 African American individuals, 14,112 Latino American individuals, 1,366 East Asian American individuals, 189 South Asian American individuals	NA	8p23.1	PPP1R3B	rs4841132-A	0.101	4E-8		5.46	NR z score increase	Affymetrix [up to 12500000] (imputed)	N
655	chr8	9183595	9183596	rs4841132	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	8p23.1	LOC157273	rs4841132-G	NR	5E-15				Affymetrix, Illumina [NR] (imputed)	N
655	chr8	9183595	9183596	rs4841132	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	8p23.1	LOC157273	rs4841132-G	NR	2E-6	(AA)			Affymetrix, Illumina [NR] (imputed)	N
655	chr8	9183595	9183596	rs4841132	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	8p23.1	LOC157273	rs4841132-G	NR	1E-6	(EA)			Affymetrix, Illumina [NR] (imputed)	N
655	chr8	9183595	9183596	rs4841132	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	8p23.1	LOC157273	rs4841132-G	NR	6E-6	(AA)			Affymetrix, Illumina [NR] (imputed)	N
655	chr8	9183595	9183596	rs4841132	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	8p23.1	LOC157273	rs4841132-G	NR	3E-7	(EA)			Affymetrix, Illumina [NR] (imputed)	N
655	chr8	9183595	9183596	rs4841132	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	8p23.1	LOC157273	rs4841132-G	NR	2E-15				Affymetrix, Illumina [NR] (imputed)	N
655	chr8	9183595	9183596	rs4841132	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	8p23.1	LOC157273	rs4841132-G	NR	2E-7	(AA)	0.041	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
655	chr8	9183595	9183596	rs4841132	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	8p23.1	LOC157273	rs4841132-G	NR	2E-6	(EA)	0.022	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
655	chr8	9183595	9183596	rs4841132	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	8p23.1	LOC157273	rs4841132-G	NR	1E-14		0.026	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
655	chr8	9183595	9183596	rs4841132	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	8p23.1	LOC157273	rs4841132-G	NR	7E-6	(EA)	0.027	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
655	chr8	9183595	9183596	rs4841132	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	8p23.1	LOC157273	rs4841132-G	NR	4E-11		0.028	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
655	chr8	9183595	9183596	rs4841132	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	8p23.1	LOC157273	rs4841132-G	NR	7E-42				Affymetrix, Illumina [NR] (imputed)	N
655	chr8	9183595	9183596	rs4841132	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	8p23.1	LOC157273	rs4841132-G	NR	2E-7	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
655	chr8	9183595	9183596	rs4841132	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	8p23.1	LOC157273	rs4841132-G	NR	2E-32	(EA)			Affymetrix, Illumina [NR] (imputed)	N
655	chr8	9183595	9183596	rs4841132	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	8p23.1	LOC157273	rs4841132-G	NR	7E-36	(EA)			Affymetrix, Illumina [NR] (imputed)	N
655	chr8	9183595	9183596	rs4841132	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	8p23.1	LOC157273	rs4841132-G	NR	2E-8	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
655	chr8	9183595	9183596	rs4841132	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	8p23.1	LOC157273	rs4841132-G	NR	2E-7	(AA)			Affymetrix, Illumina [NR] (imputed)	N
655	chr8	9183595	9183596	rs4841132	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	8p23.1	LOC157273	rs4841132-G	NR	2E-48				Affymetrix, Illumina [NR] (imputed)	N
655	chr8	9183595	9183596	rs4841132	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	8p23.1	LOC157273	rs4841132-G	NR	7E-26		2.639	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
655	chr8	9183595	9183596	rs4841132	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	8p23.1	LOC157273	rs4841132-G	NR	5E-6	(Asian)	3.815	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
655	chr8	9183595	9183596	rs4841132	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	8p23.1	LOC157273	rs4841132-G	NR	2E-19	(EA)	2.8	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
655	chr8	9183595	9183596	rs4841132	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	8p23.1	LOC157273	rs4841132-G	NR	7E-6	(Asian)	3.708	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
655	chr8	9183595	9183596	rs4841132	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	8p23.1	LOC157273	rs4841132-G	NR	3E-8	(EA)	2.305	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
655	chr8	9183595	9183596	rs4841132	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	8p23.1	LOC157273	rs4841132-G	NR	1E-14		2.376	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
655	chr8	9183595	9183596	rs4841132	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	8p23.1	LOC157273	rs4841132-G	NR	9E-71	(EA)			Affymetrix, Illumina [NR] (imputed)	N
655	chr8	9183595	9183596	rs4841132	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	8p23.1	LOC157273	rs4841132-G	NR	9E-23	(Hispanic)			Affymetrix, Illumina [NR] (imputed)	N
655	chr8	9183595	9183596	rs4841132	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	8p23.1	LOC157273	rs4841132-G	NR	8E-106				Affymetrix, Illumina [NR] (imputed)	N
655	chr8	9183595	9183596	rs4841132	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	8p23.1	LOC157273	rs4841132-G	NR	6E-9	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
655	chr8	9183595	9183596	rs4841132	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	8p23.1	LOC157273	rs4841132-G	NR	2E-12	(AA)			Affymetrix, Illumina [NR] (imputed)	N
655	chr8	9183595	9183596	rs4841132	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	8p23.1	LOC157273	rs4841132-G	NR	7E-79	(EA)			Affymetrix, Illumina [NR] (imputed)	N
655	chr8	9183595	9183596	rs4841132	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	8p23.1	LOC157273	rs4841132-G	NR	7E-23	(Hispanic)			Affymetrix, Illumina [NR] (imputed)	N
655	chr8	9183595	9183596	rs4841132	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	8p23.1	LOC157273	rs4841132-G	NR	6E-114				Affymetrix, Illumina [NR] (imputed)	N
655	chr8	9183595	9183596	rs4841132	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	8p23.1	LOC157273	rs4841132-G	NR	4E-8	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
655	chr8	9183595	9183596	rs4841132	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	8p23.1	LOC157273	rs4841132-G	NR	3E-14	(AA)			Affymetrix, Illumina [NR] (imputed)	N
655	chr8	9183595	9183596	rs4841132	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	8p23.1	LOC157273	rs4841132-G	NR	7E-48	(EA)	0.029	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
655	chr8	9183595	9183596	rs4841132	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	8p23.1	LOC157273	rs4841132-G	NR	6E-8	(Asian)	0.021	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
655	chr8	9183595	9183596	rs4841132	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	8p23.1	LOC157273	rs4841132-G	NR	4E-74		0.028	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
655	chr8	9183595	9183596	rs4841132	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	8p23.1	LOC157273	rs4841132-G	NR	3E-13	(AA)	0.031	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
655	chr8	9183595	9183596	rs4841132	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	8p23.1	LOC157273	rs4841132-G	NR	2E-14	(Hispanic)	0.031	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
655	chr8	9183595	9183596	rs4841132	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	8p23.1	LOC157273	rs4841132-G	NR	9E-7	(Asian)	0.01915	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
655	chr8	9183595	9183596	rs4841132	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	8p23.1	LOC157273	rs4841132-G	NR	5E-52		0.02748	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
655	chr8	9183595	9183596	rs4841132	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	8p23.1	LOC157273	rs4841132-G	NR	3E-7	(HIspanic)	0.02458	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
655	chr8	9183595	9183596	rs4841132	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	8p23.1	LOC157273	rs4841132-G	NR	2E-31	(EA)	0.03134	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
655	chr8	9183595	9183596	rs4841132	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	8p23.1	LOC157273	rs4841132-G	NR	1E-11	(AA)	0.03397	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
655	chr8	9183595	9183596	rs4841132	30670697	Kilpelainen TO	2019-01-22	Nat Commun	Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity.	HDL cholesterol x physical activity interaction (2df test)	7,395 African American inactive individuals, 13,092 African American active individuals, 2,753 Asian ancestry inactive individuals, 3,650 Asian ancestry active individuals, 22,963 European ancestry inactive individuals, 61,939 European ancestry active individuals, 2,829 Hispanic or Latin American inactive individuals, 6,358 Hispanic or Latin American active individuals	1,886 African American inactive individuals, 1,892 African American active individuals, 1,217 South African Black ancestry inactive individuals, 389 South African Black ancestry active individuals, 2,494 East Asian ancestry inactive individuals, 1,947 East Asian ancestry active individuals,  724 South Asian ancestry inactive individuals, 1,425 South Asian ancestry active individuals, 41,042 European ancestry inactive individuals, 66,575 European ancestry active individuals, 2,619 Hispanic inactive individuals, 8,802 Hispanic active individuals	8p23.1	NR	rs4841132-A	0.1012	2E-63				Affymetrix, Illumina [at least 2500000] (imputed)	N
655	chr8	9183595	9183596	rs4841132	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	up to 92,771 European ancestry males, up to 113,387 European ancestry females	NA	8p23.1	PPP1R3B	rs4841132-G	0.09	2E-25		0.065	[0.053-0.077] unit increase	Affymetrix, Illumina, Perlegen [2437193] (imputed)	N
655	chr8	9183595	9183596	rs4841132	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	8p23.1	RP11-115J16.1	rs4841132-A	0.1054	1E-105		0.0954	[0.087-0.104] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
655	chr8	9183595	9183596	rs4841132	29878111	Kocarnik JM	2018-08-01	Hum Mol Genet	Discovery, fine-mapping, and conditional analyses of genetic variants associated with C-reactive protein in multiethnic populations using the Metabochip in the Population Architecture using Genomics and Epidemiology (PAGE) study.	C-reactive protein levels	15,895 Hispanic individuals, 12,817 African American individuals, 1,252 Asian or Oceanian ancestry individuals, 539 Native American ancestry individuals	NA	8p23.1	LOC157273	rs4841132-A	0.1768	8E-8	(HIS)	0.1	[0.064-0.136] unit decrease	Illumina [~ 200000]	N
655	chr8	9183595	9183596	rs4841132	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p23.1	NR	rs4841132-A	NR	2E-7		0.034	unit increase	Affymetrix [at least 7091467] (imputed)	N
655	chr8	9183595	9183596	rs4841132	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p23.1	NR	rs4841132-A	NR	2E-25		0.077	unit decrease	Affymetrix [at least 7091467] (imputed)	N
655	chr8	9183595	9183596	rs4841132	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p23.1	NR	rs4841132-A	0.161	3E-8	(Hispanic)	0.112	unit decrease	Affymetrix [at least 7091467] (imputed)	N
655	chr8	9183595	9183596	rs4841132	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p23.1	NR	rs4841132-A	0.087	2E-18	(EA)	0.072	unit decrease	Affymetrix [at least 7091467] (imputed)	N
655	chr8	9183595	9183596	rs4841132	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p23.1	NR	rs4841132-A	NR	1E-17		0.064	unit decrease	Affymetrix [at least 7091467] (imputed)	N
655	chr8	9183595	9183596	rs4841132	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p23.1	NR	rs4841132-A	0.161	7E-7	(Hispanic)	0.101	unit decrease	Affymetrix [at least 7091467] (imputed)	N
655	chr8	9183595	9183596	rs4841132	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p23.1	NR	rs4841132-A	0.087	1E-12	(EA)	0.06	unit decrease	Affymetrix [at least 7091467] (imputed)	N
655	chr8	9183595	9183596	rs4841132	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p23.1	NR	rs4841132-A	NR	4E-47		0.086	unit decrease	Affymetrix [at least 7091467] (imputed)	N
655	chr8	9183595	9183596	rs4841132	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p23.1	NR	rs4841132-A	0.161	4E-10	(Hispanic)	0.104	unit decrease	Affymetrix [at least 7091467] (imputed)	N
655	chr8	9183595	9183596	rs4841132	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p23.1	NR	rs4841132-A	0.087	2E-35	(EA)	0.083	unit decrease	Affymetrix [at least 7091467] (imputed)	N
655	chr8	9183595	9183596	rs4841132	28334935	Raffield LM	2017-05-15	Hum Mol Genet	Genome-wide association study of iron traits and relation to diabetes in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL): potential genomic intersection of iron and glucose regulation?	Iron status biomarkers (total iron binding capacity)	12,586 Hispanic/Latino individuals	NA	8p23.1	PPP1R3B	rs4841132-A	NR	7E-8		0.116	unit decrease	Illumina [27700000] (imputed)	N
655	chr8	9183595	9183596	rs4841132	28334935	Raffield LM	2017-05-15	Hum Mol Genet	Genome-wide association study of iron traits and relation to diabetes in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL): potential genomic intersection of iron and glucose regulation?	Iron status biomarkers (total iron binding capacity)	12,586 Hispanic/Latino individuals	NA	8p23.1	LOC157273, PP1R3B	rs4841132-A	NR	7E-8		0.116	[0.073-0.159] unit decrease	Illumina [27700000] (imputed)	N
655	chr8	9183595	9183596	rs4841132	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	HDL cholesterol	19,223 British ancestry individuals from 6863 families.	NA	8p23.1	RP-11-115 J16.1	rs4841132-G	0.0925	1E-8		0.10894712	[0.072-0.146] mg/dl increase	Illumina [24111857] (imputed)	N
655	chr8	9183595	9183596	rs4841132	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	8p23.1	RP11-115J16.1	rs4841132-G	0.9084	3E-11		0.04101722	[0.029-0.053] unit increase	Affymetrix [~ 2500000] (imputed)	N
655	chr8	9183595	9183596	rs4841132	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	HDL cholesterol	up to 62,166 European ancestry individuals	NA	8p23.1	PPP1R3B	rs4841132-G	0.9	4E-20		0.094	[0.074-0.114] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
655	chr8	9183595	9183596	rs4841132	25631608	Wessel J	2015-01-29	Nat Commun	Low-frequency and rare exome chip variants associate with fasting glucose and type 2 diabetes susceptibility.	Fasting blood insulin	35,380 European ancestry non-diabetic individuals, 12,738 African American non-diabetic individuals	NA	8p23.1	PPP1R3B	rs4841132-A	0.0888874869713659	1E-7		0.025656354	[0.016-0.035] unit increase	Illumina [197481]	N
655	chr8	9183595	9183596	rs4841132	25631608	Wessel J	2015-01-29	Nat Commun	Low-frequency and rare exome chip variants associate with fasting glucose and type 2 diabetes susceptibility.	Fasting blood glucose	50,900 European ancestry non-diabetic individuals, 9,664 African American non-diabetic individuals	NA	8p23.1	PPP1R3B	rs4841132-A	0.0901823785419197	8E-12		0.03679102	[0.026-0.047] unit increase	Illumina [197481]	N
655	chr8	9183595	9183596	rs4841132	23903356	Hayes MG	2013-07-31	Diabetes	Identification of HKDC1 and BACE2 as genes influencing glycemic traits during pregnancy through genome-wide association studies.	Glycemic traits (pregnancy)	1,367 European ancestry individuals, 817 Hispanic individuals, 1,075 Afro-Caribbean individuals, 1,178 Thai ancestry individuals	2,798 European ancestry individuals, 228 French Canadian founder population individuals	8p23.1	PPP1R3B	rs4841132-G	0.91	5E-15	(FCP)	0.0294	[NR] unit decrease	Illumina [up to 945994] (imputed)	N
655	chr8	9183595	9183596	rs4841132	23903356	Hayes MG	2013-07-31	Diabetes	Identification of HKDC1 and BACE2 as genes influencing glycemic traits during pregnancy through genome-wide association studies.	Glycemic traits (pregnancy)	1,367 European ancestry individuals, 817 Hispanic individuals, 1,075 Afro-Caribbean individuals, 1,178 Thai ancestry individuals	2,798 European ancestry individuals, 228 French Canadian founder population individuals	8p23.1	PPP1R3B	rs4841132-G	0.91	3E-13	(FPG)	0.0059	[NR] unit decrease	Illumina [up to 945994] (imputed)	N
655	chr8	9183595	9183596	rs4841132	22916037	Inouye M	2012-08-16	PLoS Genet	Novel Loci for metabolic networks and multi-tissue expression studies reveal genes for atherosclerosis.	Metabolite levels	6,608 European ancestry individuals	NA	8p23.1	PPP1R3B, TNKS	rs4841132-?	0.15	2E-9				Illumina [~ 2000000] (imputed)	N
655	chr8	9183595	9183596	rs4841132	22581228	Manning AK	2012-05-13	Nat Genet	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting blood insulin (BMI interaction)	Up to 51,750 European ancestry individuals	Up to 33,823 European ancestry individuals	8p23.1	PPP1R3B	rs4841132-A	0.0937	2E-10		0.001989	[0.0001-0.00388] unit increase	Affymetrix, Illumina [~ 2400000] (imputed)	N
655	chr8	9183595	9183596	rs4841132	22581228	Manning AK	2012-05-13	Nat Genet	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting blood insulin	Up to 51,750 European ancestry individuals	Up to 33,823 European ancestry individuals	8p23.1	PPP1R3B	rs4841132-A	0.1162	6E-15		0.0307	[0.021-0.04] unit increase	Affymetrix, Illumina [~ 2400000] (imputed)	N
655	chr8	9183595	9183596	rs4841132	22581228	Manning AK	2012-05-13	Nat Genet	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting blood glucose (BMI interaction)	Up to 58,074 European ancestry individuals	Up tp 38,422 European ancestry individuals	8p23.1	PPP1R3B	rs4841132-A	0.0936	8E-9		6.183E-4	[-0.00148-0.00272] unit increase	Affymetrix, Illumina [~ 2400000] (imputed)	N
655	chr8	9183595	9183596	rs4841132	22581228	Manning AK	2012-05-13	Nat Genet	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting blood glucose	Up to 58,074 European ancestry individuals	Up tp 38,422 European ancestry individuals	8p23.1	PPP1R3B	rs4841132-A	0.1045	1E-13		0.0312	[0.022-0.041] unit increase	Affymetrix, Illumina [~ 2400000] (imputed)	N
655	chr8	9183663	9183664	rs4841133	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	8p23.1		rs4841133-G	NR	5E-13		0.0232	[0.017-0.029] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
655	chr8	9183663	9183664	rs4841133	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	334,944 European ancestry, NR ancestry individuals	NA	8p23.1		rs4841133-?	NR	5E-8				Affymetrix [NR] (imputed)	N
655	chr8	9183663	9183664	rs4841133	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	8p23.1	RP11-115J16.1	rs4841133-G	0.90871	1E-18		0.034388315	[0.027-0.042] unit increase	Affymetrix [93095623] (imputed)	N
655	chr8	9183663	9183664	rs4841133	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	8p23.1	RP11-115J16.1	rs4841133-G	0.908745	3E-11		0.026375074	[0.019-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
655	chr8	9183663	9183664	rs4841133	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	8p23.1	NR	rs4841133-G	0.9088108	9E-10		0.0311367	[0.021-0.041] unit increase	Affymetrix [16577313] (imputed)	N
655	chr8	9183663	9183664	rs4841133	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	8p23.1	NR	rs4841133-G	0.9086877	6E-36		0.022721	[0.019-0.027] unit increase	Affymetrix [16582621] (imputed)	N
655	chr8	9183663	9183664	rs4841133	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	8p23.1	NR	rs4841133-G	0.9086877	1E-28		0.022133	[0.018-0.026] unit increase	Affymetrix [16582614] (imputed)	N
655	chr8	9183663	9183664	rs4841133	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	148,164 European ancestry individuals	NA	8p23.1	PPP1R3B	rs4841133-A	0.1	6E-19		0.064	[0.05-0.078] unit decrease	Affymetrix, Illumina, Perlegen [10019203] (imputed)	N
655	chr8	9183663	9183664	rs4841133	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	Cholesterol, total	19,259 British ancestry individuals from 6863 families.	NA	8p23.1	RP11-115 J16.1	rs4841133-G	0.0929	3E-9		0.11155177	[0.075-0.148] mg/dl increase	Illumina [24111857] (imputed)	N
655	chr8	9184230	9184231	rs4240624	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small HDL	115,082 European ancestry individuals	NA	8p23.1		rs4240624-G	0.0907662	7E-44		0.099535	[0.085-0.114] unit decrease	NR [11722792] (imputed)	N
655	chr8	9184230	9184231	rs4240624	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium HDL	115,082 European ancestry individuals	NA	8p23.1		rs4240624-G	0.0907662	3E-51		0.10043	[0.087-0.113] unit decrease	NR [11722792] (imputed)	N
655	chr8	9184230	9184231	rs4240624	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in HDL	115,082 European ancestry individuals	NA	8p23.1		rs4240624-G	0.0907662	3E-46		0.0920564	[0.079-0.105] unit decrease	NR [11722792] (imputed)	N
655	chr8	9184230	9184231	rs4240624	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total concentration of lipoprotein particles	115,082 European ancestry individuals	NA	8p23.1		rs4240624-G	0.0907662	5E-65		0.115228	[0.1-0.13] unit decrease	NR [11722792] (imputed)	N
655	chr8	9184230	9184231	rs4240624	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small HDL	115,082 European ancestry individuals	NA	8p23.1		rs4240624-G	0.0907662	1E-42		0.0974504	[0.083-0.111] unit decrease	NR [11722792] (imputed)	N
655	chr8	9184230	9184231	rs4240624	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium HDL	115,082 European ancestry individuals	NA	8p23.1		rs4240624-G	0.0907662	3E-48		0.0980429	[0.085-0.111] unit decrease	NR [11722792] (imputed)	N
655	chr8	9184230	9184231	rs4240624	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in HDL	115,082 European ancestry individuals	NA	8p23.1		rs4240624-G	0.0907662	8E-44		0.0901292	[0.077-0.103] unit decrease	NR [11722792] (imputed)	N
655	chr8	9184230	9184231	rs4240624	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphatidylcholine levels	115,006 European ancestry individuals	NA	8p23.1		rs4240624-G	0.090774	2E-36		0.0847062	[0.072-0.098] unit decrease	NR [11722792] (imputed)	N
655	chr8	9184230	9184231	rs4240624	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	HDL cholesterol levels	115,082 European ancestry individuals	NA	8p23.1		rs4240624-G	0.0907662	2E-47		0.0929179	[0.08-0.106] unit decrease	NR [11722792] (imputed)	N
655	chr8	9184230	9184231	rs4240624	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycine levels	114,978 European ancestry individuals	NA	8p23.1		rs4240624-G	0.0907657	3E-78		0.127021	[0.11-0.14] unit increase	NR [11722792] (imputed)	N
655	chr8	9184230	9184231	rs4240624	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small HDL	115,082 European ancestry individuals	NA	8p23.1		rs4240624-G	0.0907662	3E-44		0.0982997	[0.084-0.112] unit decrease	NR [11722792] (imputed)	N
655	chr8	9184230	9184231	rs4240624	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	8p23.1		rs4240624-G	0.0907662	2E-51		0.0986528	[0.086-0.111] unit decrease	NR [11722792] (imputed)	N
655	chr8	9184230	9184231	rs4240624	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in HDL	115,082 European ancestry individuals	NA	8p23.1		rs4240624-G	0.0907662	2E-39		0.0836687	[0.071-0.096] unit decrease	NR [11722792] (imputed)	N
655	chr8	9184230	9184231	rs4240624	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium HDL particles	115,082 European ancestry individuals	NA	8p23.1		rs4240624-G	0.0907662	5E-52		0.10045	[0.087-0.113] unit decrease	NR [11722792] (imputed)	N
655	chr8	9184230	9184231	rs4240624	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of HDL particles	115,082 European ancestry individuals	NA	8p23.1		rs4240624-G	0.0907662	3E-65		0.115197	[0.1-0.13] unit decrease	NR [11722792] (imputed)	N
655	chr8	9184230	9184231	rs4240624	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium HDL	115,082 European ancestry individuals	NA	8p23.1		rs4240624-G	0.0907662	2E-54		0.103072	[0.09-0.116] unit decrease	NR [11722792] (imputed)	N
655	chr8	9184230	9184231	rs4240624	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	8p23.1		rs4240624-G	0.0907662	2E-48		0.0944472	[0.082-0.107] unit decrease	NR [11722792] (imputed)	N
655	chr8	9184230	9184231	rs4240624	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	8p23.1		rs4240624-G	0.0907662	2E-54		0.102725	[0.09-0.116] unit decrease	NR [11722792] (imputed)	N
655	chr8	9184230	9184231	rs4240624	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein A1 levels	115,082 European ancestry individuals	NA	8p23.1		rs4240624-G	0.0907662	2E-52		0.10019	[0.087-0.113] unit decrease	NR [11722792] (imputed)	N
655	chr8	9184230	9184231	rs4240624	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	8p23.1		rs4240624-A	NR	3E-10		0.0218	[0.015-0.028] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
655	chr8	9184230	9184231	rs4240624	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	8p23.1		rs4240624-A	NR	1E-13		0.0244	[0.018-0.031] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
655	chr8	9184230	9184231	rs4240624	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Liver volume	32,860 European ancestry individuals	NA	8p23.1	PPP1R3B	rs4240624-?	NR	1E-31		0.143	NR L decrease	Affymetrix [9390170] (imputed)	N
655	chr8	9184230	9184231	rs4240624	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	8p23.1	LOC157273	rs4240624-G	0.0911302	2E-308		0.0152339	[0.014-0.016] unit increase	Affymetrix [13995440] (imputed)	N
655	chr8	9184230	9184231	rs4240624	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	8p23.1	NR	rs4240624-A	0.9094	1E-49		0.005811	[0.005-0.0066] unit increase	Affymetrix [NR] (imputed)	N
655	chr8	9184230	9184231	rs4240624	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	C-reactive protein levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	8p23.1	LOC157273	rs4240624-?		3E-15		0.0802	[0.06-0.1] unit decrease	Illumina [31500000] (imputed)	N
655	chr8	9184230	9184231	rs4240624	33287642	Said MA	2020-12-08	J Am Heart Assoc	Associations of Observational and Genetically Determined Caffeine Intake With Coronary Artery Disease and Diabetes Mellitus.	Caffeine consumption from coffee or tea	362,316 European ancestry individuals	NA	8p23.1	PPP1R3B	rs4240624-G	0.092461	2E-11		0.02693	[0.019-0.035] unit increase	Affymetrix [19400838] (imputed)	N
655	chr8	9184230	9184231	rs4240624	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	8p23.1	LOC157273	rs4240624-G	0.186574	2E-11	(hexanoylglutamine)	0.189	[0.13-0.24] unit decrease	Illumina [13039987] (imputed)	N
655	chr8	9184230	9184231	rs4240624	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	8p23.1	RP11-115J16.1	rs4240624-A	0.9086988	1E-9		0.023276683	[0.016-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
655	chr8	9184230	9184231	rs4240624	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	8p23.1	RP11-115J16.1	rs4240624-A	0.9086998	2E-14		0.029412944	[0.022-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
655	chr8	9184230	9184231	rs4240624	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	8p23.1	RP11-115J16.1	rs4240624-A	0.9087116	1E-15		0.03085225	[0.023-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
655	chr8	9184230	9184231	rs4240624	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	8p23.1	RP11-115J16.1	rs4240624-A	0.9087014	1E-9		0.02404049	[0.016-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
655	chr8	9184230	9184231	rs4240624	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8p23.1	NR	rs4240624-A	0.921967	4E-19				Affymetrix, Illumina [24653286] (imputed)	N
655	chr8	9184230	9184231	rs4240624	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	8p23.1	NR	rs4240624-A	0.909528	1E-19		0.029064	[0.023-0.035] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
655	chr8	9184230	9184231	rs4240624	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8p23.1	NR	rs4240624-A	0.921371	1E-20				Affymetrix, Illumina [24558453] (imputed)	N
655	chr8	9184230	9184231	rs4240624	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	8p23.1	NR	rs4240624-A	0.909529	7E-21		0.030135	[0.024-0.036] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
655	chr8	9184230	9184231	rs4240624	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol use disorder	57,564 European ancestry cases, 256,395 European ancestry controls	NA	8p23.1	NR	rs4240624-A	0.9127	6E-9		5.82	[NR] unit increase	Affymetrix [7003540] (imputed)	N
655	chr8	9184230	9184231	rs4240624	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	8p23.1	NR	rs4240624-A	0.9083149	2E-59		0.0221708	[0.019-0.025] unit increase	Affymetrix [16582909] (imputed)	N
655	chr8	9184230	9184231	rs4240624	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	8p23.1	NR	rs4240624-A	0.9083149	1E-44		0.0216221	[0.018-0.025] unit increase	Affymetrix [16582965] (imputed)	N
655	chr8	9184230	9184231	rs4240624	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	LDL cholesterol levels	up to 23,353 African ancestry individuals, 13,171 Asian ancestry individuals, up to 82,522 European ancestry individuals, 6,646 Hispanic individuals	NA	8p23.1		rs4240624-A	0.8853	1E-18		2.3229	[1.81-2.84] unit increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
655	chr8	9184230	9184231	rs4240624	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	HDL cholesterol levels	up to 23,761 African ancestry individuals, 13,171 Asian ancestry individuals, up to 90,272 European ancestry individuals, 6,620 Hispanic individuals	NA	8p23.1		rs4240624-A	0.8828	7E-21		0.0169	[0.013-0.02] unit increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
655	chr8	9184230	9184231	rs4240624	29878111	Kocarnik JM	2018-08-01	Hum Mol Genet	Discovery, fine-mapping, and conditional analyses of genetic variants associated with C-reactive protein in multiethnic populations using the Metabochip in the Population Architecture using Genomics and Epidemiology (PAGE) study.	C-reactive protein levels	15,895 Hispanic individuals, 12,817 African American individuals, 1,252 Asian or Oceanian ancestry individuals, 539 Native American ancestry individuals	NA	8p23.1	LOC157273	rs4240624-A	0.8163	1E-14		0.1	[0.075-0.125] unit increase	Illumina [~ 200000]	N
655	chr8	9184230	9184231	rs4240624	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	HDL cholesterol levels	34,930 East Asian ancestry individuals, 187,167 European ancestry individuals	8,741 Chinese ancestry individuals	8p23.1	PPP1R3B	rs4240624-A	0.925	1E-42	(Trans-ethnic initial)	0.0818	[0.07-0.093] unit increase (EA Beta values)	Affymetrix, Illumina [~ 1900000] (imputed)	N
655	chr8	9184230	9184231	rs4240624	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	8p23.1	NR	rs4240624-G	NR	8E-6		1.0869565	[NR]	Illumina [7158791] (imputed)	N
655	chr8	9184690	9184691	rs6601299	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small LDL	115,082 European ancestry individuals	NA	8p23.1		rs6601299-T	0.100719	5E-12		0.0474781	[0.034-0.061] unit decrease	NR [11722792] (imputed)	N
655	chr8	9184690	9184691	rs6601299	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium LDL	115,082 European ancestry individuals	NA	8p23.1		rs6601299-T	0.100719	1E-15		0.0549388	[0.041-0.068] unit decrease	NR [11722792] (imputed)	N
655	chr8	9184690	9184691	rs6601299	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in LDL	115,082 European ancestry individuals	NA	8p23.1		rs6601299-T	0.100719	2E-17		0.0583226	[0.045-0.072] unit decrease	NR [11722792] (imputed)	N
655	chr8	9184690	9184691	rs6601299	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol minus HDL-C levels	115,082 European ancestry individuals	NA	8p23.1		rs6601299-T	0.100719	2E-15		0.0540864	[0.041-0.067] unit decrease	NR [11722792] (imputed)	N
655	chr8	9184690	9184691	rs6601299	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Remnant cholesterol (non-HDL, non-LDL -cholesterol)	115,082 European ancestry individuals	NA	8p23.1		rs6601299-T	0.100719	5E-11		0.044935	[0.032-0.058] unit decrease	NR [11722792] (imputed)	N
655	chr8	9184690	9184691	rs6601299	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small LDL	115,082 European ancestry individuals	NA	8p23.1		rs6601299-T	0.100719	2E-8		0.0387478	[0.025-0.052] unit decrease	NR [11722792] (imputed)	N
655	chr8	9184690	9184691	rs6601299	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium VLDL	115,082 European ancestry individuals	NA	8p23.1		rs6601299-T	0.100719	5E-8		0.0373427	[0.024-0.051] unit decrease	NR [11722792] (imputed)	N
655	chr8	9184690	9184691	rs6601299	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium LDL	115,082 European ancestry individuals	NA	8p23.1		rs6601299-T	0.100719	2E-15		0.0545348	[0.041-0.068] unit decrease	NR [11722792] (imputed)	N
655	chr8	9184690	9184691	rs6601299	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in LDL	115,082 European ancestry individuals	NA	8p23.1		rs6601299-T	0.100719	2E-16		0.0562299	[0.043-0.07] unit decrease	NR [11722792] (imputed)	N
655	chr8	9184690	9184691	rs6601299	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycoprotein acetyls levels	115,082 European ancestry individuals	NA	8p23.1		rs6601299-T	0.100719	5E-23		0.0670658	[0.054-0.08] unit decrease	NR [11722792] (imputed)	N
655	chr8	9184690	9184691	rs6601299	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	8p23.1		rs6601299-T	0.100719	3E-8		0.0382212	[0.025-0.052] unit decrease	NR [11722792] (imputed)	N
655	chr8	9184690	9184691	rs6601299	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium VLDL particles	115,082 European ancestry individuals	NA	8p23.1		rs6601299-T	0.100719	6E-9		0.0398875	[0.026-0.053] unit decrease	NR [11722792] (imputed)	N
655	chr8	9184690	9184691	rs6601299	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium LDL particles	115,082 European ancestry individuals	NA	8p23.1		rs6601299-T	0.100719	1E-9		0.0416722	[0.028-0.055] unit decrease	NR [11722792] (imputed)	N
655	chr8	9184690	9184691	rs6601299	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large LDL particles	115,082 European ancestry individuals	NA	8p23.1		rs6601299-T	0.100719	5E-10		0.0426671	[0.029-0.056] unit decrease	NR [11722792] (imputed)	N
655	chr8	9184690	9184691	rs6601299	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of LDL particles	115,082 European ancestry individuals	NA	8p23.1		rs6601299-T	0.100719	9E-10		0.0419874	[0.029-0.055] unit decrease	NR [11722792] (imputed)	N
655	chr8	9184690	9184691	rs6601299	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Clinical LDL cholesterol levels	115,082 European ancestry individuals	NA	8p23.1		rs6601299-T	0.100719	3E-17		0.0575878	[0.044-0.071] unit decrease	NR [11722792] (imputed)	N
655	chr8	9184690	9184691	rs6601299	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small LDL	115,082 European ancestry individuals	NA	8p23.1		rs6601299-T	0.100719	5E-14		0.051684	[0.038-0.065] unit decrease	NR [11722792] (imputed)	N
655	chr8	9184690	9184691	rs6601299	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium LDL	115,082 European ancestry individuals	NA	8p23.1		rs6601299-T	0.100719	1E-15		0.0550706	[0.042-0.069] unit decrease	NR [11722792] (imputed)	N
655	chr8	9184690	9184691	rs6601299	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in LDL	115,082 European ancestry individuals	NA	8p23.1		rs6601299-T	0.100719	5E-19		0.0609874	[0.048-0.074] unit decrease	NR [11722792] (imputed)	N
655	chr8	9184690	9184691	rs6601299	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small LDL	115,082 European ancestry individuals	NA	8p23.1		rs6601299-T	0.100719	6E-14		0.051634	[0.038-0.065] unit decrease	NR [11722792] (imputed)	N
655	chr8	9184690	9184691	rs6601299	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	8p23.1		rs6601299-T	0.100719	3E-8		0.0378728	[0.024-0.051] unit decrease	NR [11722792] (imputed)	N
655	chr8	9184690	9184691	rs6601299	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	8p23.1		rs6601299-T	0.100719	1E-16		0.0568837	[0.043-0.07] unit decrease	NR [11722792] (imputed)	N
655	chr8	9184690	9184691	rs6601299	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein B levels	115,082 European ancestry individuals	NA	8p23.1		rs6601299-T	0.100719	2E-8		0.0387853	[0.025-0.052] unit decrease	NR [11722792] (imputed)	N
655	chr8	9184690	9184691	rs6601299	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x long total sleep time interaction (2df test)	2,913 African American long sleepers, 358 Chinese ancestry long sleepers, 110 Asian ancestry long sleepers, 7,583 European ancestry long sleepers, 1,036 Hispanic/Latino long sleepers, up to 11,862 African American controls, 1,432 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,744 European ancestry controls, 4,066 Hispanic/Latino controls	at least 214 African American long sleepers, 616 East Asian ancestry long sleepers, up to 6,657 European ancestry long sleepers, 2,457 Hispanic long sleepers, at least 913 African American controls, 2,517 East Asian ancestry controls, up to 26,868 European ancestry controls, 9,870 Hispanic controls	8p23.1	AC022784.6	rs6601299-?	NR	3E-16		1.583	[1.14-2.02] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
655	chr8	9184690	9184691	rs6601299	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	8p23.1	NR	rs6601299-?	NR	7E-8		2.579273	[1.64-3.52] unit increase	Illumina [32003504] (imputed)	N
655	chr8	9184690	9184691	rs6601299	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	8p23.1	NR	rs6601299-?	NR	7E-18		1.299997	[1-1.6] unit increase	Illumina [31978362] (imputed)	N
655	chr8	9184690	9184691	rs6601299	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p23.1	NR	rs6601299-T	NR	2E-6		0.03	unit increase	Affymetrix [at least 7091467] (imputed)	N
655	chr8	9184690	9184691	rs6601299	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p23.1	NR	rs6601299-T	NR	2E-23		0.07	unit decrease	Affymetrix [at least 7091467] (imputed)	N
655	chr8	9184690	9184691	rs6601299	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p23.1	NR	rs6601299-T	0.196	3E-9	(Hispanic)	0.111	unit decrease	Affymetrix [at least 7091467] (imputed)	N
655	chr8	9184690	9184691	rs6601299	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p23.1	NR	rs6601299-T	0.096	5E-16	(EA)	0.063	unit decrease	Affymetrix [at least 7091467] (imputed)	N
655	chr8	9184690	9184691	rs6601299	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p23.1	NR	rs6601299-T	NR	1E-15		0.057	unit decrease	Affymetrix [at least 7091467] (imputed)	N
655	chr8	9184690	9184691	rs6601299	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p23.1	NR	rs6601299-T	0.196	2E-7	(Hispanic)	0.097	unit decrease	Affymetrix [at least 7091467] (imputed)	N
655	chr8	9184690	9184691	rs6601299	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p23.1	NR	rs6601299-T	0.096	2E-10	(EA)	0.051	unit decrease	Affymetrix [at least 7091467] (imputed)	N
655	chr8	9184690	9184691	rs6601299	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p23.1	NR	rs6601299-T	NR	3E-44		0.079	unit decrease	Affymetrix [at least 7091467] (imputed)	N
655	chr8	9184690	9184691	rs6601299	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p23.1	NR	rs6601299-T	0.196	6E-9	(Hispanic)	0.09	unit decrease	Affymetrix [at least 7091467] (imputed)	N
655	chr8	9184690	9184691	rs6601299	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p23.1	NR	rs6601299-T	0.096	1E-33	(EA)	0.077	unit decrease	Affymetrix [at least 7091467] (imputed)	N
655	chr8	9184690	9184691	rs6601299	21347282	Lettre G	2011-02-10	PLoS Genet	Genome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project.	HDL cholesterol	7,813 African American individuals	4,323 African American and Afro-Caribbean individuals	8p23.1	PPP1R3B	rs6601299-T	0.16	6E-9		0.1407	[0.094-0.187] unit decrease	Affymetrix [~ 2740000] (imputed)	N
655	chr8	9184929	9184930	rs7836983	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Processed meat consumption	335,576 European ancestry individuals	NA	8p23.1	PRAG1, MFHAS1, ERI1	rs7836983-?	NR	5E-9		0.0171004	[0.011-0.023] unit increase	Affymetrix [25921788] (imputed)	N
655	chr8	9185080	9185081	rs2126260	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small LDL	115,082 European ancestry individuals	NA	8p23.1		rs2126260-T	0.200715	2E-11		0.0346979	[0.025-0.045] unit decrease	NR [11722792] (imputed)	N
655	chr8	9185145	9185146	rs2126259	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	8p23.1		rs2126259-T	0.100815	9E-28		0.0736584	[0.06-0.087] unit decrease	NR [11722792] (imputed)	N
655	chr8	9185145	9185146	rs2126259	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total fatty acid levels	115,006 European ancestry individuals	NA	8p23.1		rs2126259-T	0.100821	2E-23		0.0673835	[0.054-0.081] unit decrease	NR [11722792] (imputed)	N
655	chr8	9185145	9185146	rs2126259	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Saturated fatty acid levels	115,006 European ancestry individuals	NA	8p23.1		rs2126259-T	0.100821	2E-17		0.0572679	[0.044-0.071] unit decrease	NR [11722792] (imputed)	N
655	chr8	9185145	9185146	rs2126259	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Polyunsaturated fatty acid levels	115,006 European ancestry individuals	NA	8p23.1		rs2126259-T	0.100821	4E-37		0.0848201	[0.072-0.098] unit decrease	NR [11722792] (imputed)	N
655	chr8	9185145	9185146	rs2126259	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in IDL	115,082 European ancestry individuals	NA	8p23.1		rs2126259-T	0.100815	3E-10		0.0416219	[0.029-0.055] unit decrease	NR [11722792] (imputed)	N
655	chr8	9185145	9185146	rs2126259	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-6 fatty acid levels	115,006 European ancestry individuals	NA	8p23.1		rs2126259-T	0.100821	3E-35		0.0829891	[0.07-0.096] unit decrease	NR [11722792] (imputed)	N
655	chr8	9185145	9185146	rs2126259	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Linoleic acid levels	115,006 European ancestry individuals	NA	8p23.1		rs2126259-T	0.100821	2E-25		0.0701496	[0.057-0.083] unit decrease	NR [11722792] (imputed)	N
655	chr8	9185145	9185146	rs2126259	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Albumin levels	115,064 European ancestry individuals	NA	8p23.1		rs2126259-T	0.100818	5E-19		0.0608502	[0.047-0.074] unit decrease	NR [11722792] (imputed)	N
655	chr8	9185145	9185146	rs2126259	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	8p23.1		rs2126259-C	NR	9E-34		0.0436	[0.037-0.051] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
655	chr8	9185145	9185146	rs2126259	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	8p23.1	PPP1R3B, TNKS	rs2126259-T	0.1	5E-34		12.2	z-score increase	Affymetrix [4312306] (imputed)	N
655	chr8	9185145	9185146	rs2126259	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	8p23.1	NR	rs2126259-?	NR	6E-7		2.303174	[1.4-3.21] unit increase	Illumina [32003504] (imputed)	N
655	chr8	9185145	9185146	rs2126259	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	8p23.1	NR	rs2126259-?	NR	6E-17		1.218833	[0.93-1.5] unit increase	Illumina [31978362] (imputed)	N
655	chr8	9185145	9185146	rs2126259	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p23.1	NR	rs2126259-T	NR	2E-6		0.03	unit increase	Affymetrix [at least 7091467] (imputed)	N
655	chr8	9185145	9185146	rs2126259	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p23.1	NR	rs2126259-T	NR	1E-22		0.068	unit decrease	Affymetrix [at least 7091467] (imputed)	N
655	chr8	9185145	9185146	rs2126259	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p23.1	NR	rs2126259-T	0.198	4E-9	(Hispanic)	0.109	unit decrease	Affymetrix [at least 7091467] (imputed)	N
655	chr8	9185145	9185146	rs2126259	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p23.1	NR	rs2126259-T	0.096	6E-16	(EA)	0.063	unit decrease	Affymetrix [at least 7091467] (imputed)	N
655	chr8	9185145	9185146	rs2126259	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p23.1	NR	rs2126259-T	NR	3E-15		0.056	unit decrease	Affymetrix [at least 7091467] (imputed)	N
655	chr8	9185145	9185146	rs2126259	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p23.1	NR	rs2126259-T	0.198	3E-7	(Hispanic)	0.095	unit decrease	Affymetrix [at least 7091467] (imputed)	N
655	chr8	9185145	9185146	rs2126259	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p23.1	NR	rs2126259-T	0.096	2E-10	(EA)	0.051	unit decrease	Affymetrix [at least 7091467] (imputed)	N
655	chr8	9185145	9185146	rs2126259	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p23.1	NR	rs2126259-T	NR	1E-43		0.078	unit decrease	Affymetrix [at least 7091467] (imputed)	N
655	chr8	9185145	9185146	rs2126259	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p23.1	NR	rs2126259-T	0.198	7E-9	(Hispanic)	0.089	unit decrease	Affymetrix [at least 7091467] (imputed)	N
655	chr8	9185145	9185146	rs2126259	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p23.1	NR	rs2126259-T	0.096	2E-33	(EA)	0.076	unit decrease	Affymetrix [at least 7091467] (imputed)	N
655	chr8	9185145	9185146	rs2126259	27286809	Ligthart S	2016-06-10	BMC Genomics	Bivariate genome-wide association study identifies novel pleiotropic loci for lipids and inflammation.	C-reactive protein levels or total cholesterol levels (pleiotropy)	65,000 individuals (C-reactive protein), 100,184 individuals (total cholesterol)	NA	8p23.1	PPP1R3B	rs2126259-T	NR	1E-31				NR [2501549] (imputed)	N
655	chr8	9185145	9185146	rs2126259	23505323	Weissglas-Volkov D	2013-03-15	J Med Genet	Genomic study in Mexicans identifies a new locus for triglycerides and refines European lipid loci.	HDL cholesterol	1,122 Mexican ancestry hypertriglyceridemia cases, 1,118 Mexican ancestry controls	1,067 Mexican ancestry hypertriglyceridemia cases, 1,054 Mexican ancestry controls	8p23.1	PPP1R3B	rs2126259-A	0.39	1E-6		0.11	[0.071-0.149] unit decrease	Illumina [1361436] (imputed)	N
655	chr8	9185145	9185146	rs2126259	20864672	Waterworth DM	2010-09-23	Arterioscler Thromb Vasc Biol	Genetic variants influencing circulating lipid levels and risk of coronary artery disease.	LDL cholesterol	up to 17,723 European ancestry individuals	up to 37,774 European ancestry individuals, up to 9,665 Indian Asian ancestry individuals	8p23.1	PPP1R3B	rs2126259-A	0.13	7E-12		0.02	[0.01-0.03] unit decrease	Affymetrix, Illumina, Perlegen [2155369] (imputed)	N
655	chr8	9185178	9185179	rs34290760	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	417,580 European ancestry individuals	NA	8p23.1		rs34290760-C	0.970888	4E-8		0.032	[0.02-0.044] unit decrease	NR [7250403] (imputed)	N
655	chr8	9185532	9185533	rs35614264	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	RP11-115J16.1	rs35614264-C	NR	3E-8		0.0096371	[0.0062-0.013] unit increase	Affymetrix [18485882] (imputed)	N
655	chr8	9186523	9186524	rs4841134	27790247	He L	2016-11-03	Front Genet	Pleiotropic Meta-Analyses of Longitudinal Studies Discover Novel Genetic Variants Associated with Age-Related Diseases.	Age-related disease endophenotypes	9,618 European ancestry individuals	19,796 European ancestry individuals	8p23.1	NR	rs4841134-?	NR	8E-6				Affymetrix [NR]	N
655	chr8	9187241	9187242	rs1461729	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large LDL	115,082 European ancestry individuals	NA	8p23.1		rs1461729-A	0.100763	6E-19		0.0604263	[0.047-0.074] unit decrease	NR [11722792] (imputed)	N
655	chr8	9187241	9187242	rs1461729	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in IDL	115,082 European ancestry individuals	NA	8p23.1		rs1461729-A	0.100763	2E-14		0.0509028	[0.038-0.064] unit decrease	NR [11722792] (imputed)	N
655	chr8	9187241	9187242	rs1461729	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total free cholesterol levels	115,082 European ancestry individuals	NA	8p23.1		rs1461729-A	0.100763	5E-23		0.0662582	[0.053-0.079] unit decrease	NR [11722792] (imputed)	N
655	chr8	9187241	9187242	rs1461729	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total esterified cholesterol levels	115,082 European ancestry individuals	NA	8p23.1		rs1461729-A	0.100763	7E-32		0.0778279	[0.065-0.091] unit decrease	NR [11722792] (imputed)	N
655	chr8	9187241	9187242	rs1461729	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol levels	115,082 European ancestry individuals	NA	8p23.1		rs1461729-A	0.100763	2E-29		0.0749645	[0.062-0.088] unit decrease	NR [11722792] (imputed)	N
655	chr8	9187241	9187242	rs1461729	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large LDL	115,082 European ancestry individuals	NA	8p23.1		rs1461729-A	0.100763	4E-18		0.0592574	[0.046-0.073] unit decrease	NR [11722792] (imputed)	N
655	chr8	9187241	9187242	rs1461729	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	LDL cholesterol levels	115,082 European ancestry individuals	NA	8p23.1		rs1461729-A	0.100763	4E-19		0.0610586	[0.048-0.074] unit decrease	NR [11722792] (imputed)	N
655	chr8	9187241	9187242	rs1461729	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	8p23.1		rs1461729-A	0.100763	4E-17		0.0577885	[0.044-0.071] unit decrease	NR [11722792] (imputed)	N
655	chr8	9187241	9187242	rs1461729	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large LDL	115,082 European ancestry individuals	NA	8p23.1		rs1461729-A	0.100763	4E-19		0.0603964	[0.047-0.074] unit decrease	NR [11722792] (imputed)	N
655	chr8	9187241	9187242	rs1461729	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in LDL	115,082 European ancestry individuals	NA	8p23.1		rs1461729-A	0.100763	5E-18		0.0588617	[0.046-0.072] unit decrease	NR [11722792] (imputed)	N
655	chr8	9187241	9187242	rs1461729	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in IDL	115,082 European ancestry individuals	NA	8p23.1		rs1461729-A	0.100763	9E-14		0.0495572	[0.037-0.063] unit decrease	NR [11722792] (imputed)	N
655	chr8	9187241	9187242	rs1461729	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	8p23.1		rs1461729-A	0.100763	3E-21		0.0652094	[0.052-0.079] unit decrease	NR [11722792] (imputed)	N
655	chr8	9187241	9187242	rs1461729	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large LDL	115,082 European ancestry individuals	NA	8p23.1		rs1461729-A	0.100763	1E-20		0.0632913	[0.05-0.077] unit decrease	NR [11722792] (imputed)	N
655	chr8	9187241	9187242	rs1461729	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in IDL	115,082 European ancestry individuals	NA	8p23.1		rs1461729-A	0.100763	1E-18		0.0583914	[0.045-0.071] unit decrease	NR [11722792] (imputed)	N
655	chr8	9187241	9187242	rs1461729	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	8p23.1		rs1461729-A	0.100763	2E-20		0.0639405	[0.05-0.077] unit decrease	NR [11722792] (imputed)	N
655	chr8	9187241	9187242	rs1461729	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large LDL	115,082 European ancestry individuals	NA	8p23.1		rs1461729-A	0.100763	2E-20		0.0629907	[0.05-0.076] unit decrease	NR [11722792] (imputed)	N
655	chr8	9187241	9187242	rs1461729	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in IDL	115,082 European ancestry individuals	NA	8p23.1		rs1461729-A	0.100763	2E-17		0.0564393	[0.043-0.069] unit decrease	NR [11722792] (imputed)	N
655	chr8	9187241	9187242	rs1461729	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Aspartate aminotransferase levels	386,570 British ancestry individuals, 10,617 Asian or Asian British individuals, 7,426 Black or Black British individuals, 2,321 Chinese ancestry individuals	NA	8p23.1	TNKS	rs1461729-?	NR	7E-13		0.0045	[0.0035-0.0055] unit increase	Affymetrix [21347608] (imputed)	N
655	chr8	9187241	9187242	rs1461729	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Alanine aminotransferase levels	387,859 British ancestry individuals, 10,635 Asian or Asian British individuals, 7,468 Black or Black British individuals, 2,338 Chinese ancestry individuals	NA	8p23.1	TNKS	rs1461729-?	NR	8E-29		0.0093	[0.0079-0.0107] unit increase	Affymetrix [21347608] (imputed)	N
655	chr8	9187241	9187242	rs1461729	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	8p23.1	LOC157273	rs1461729-A	0.101485	2E-44		0.00901384	[0.0078-0.0103] unit increase	Affymetrix [13995440] (imputed)	N
655	chr8	9187241	9187242	rs1461729	31566214	Kulminski AM	2019-09-30	J Gerontol A Biol Sci Med Sci	Quantitative and qualitative role of antagonistic heterogeneity in genetics of blood lipids.	Total cholesterol levels	29,902 European ancestry individuals	NA	8p23.1		rs1461729-A	0.09	2E-11		3.46	[2.46-4.46] unit decrease	Affymetrix, Illumina [up to 2500000] (imputed)	N
655	chr8	9187241	9187242	rs1461729	31566214	Kulminski AM	2019-09-30	J Gerontol A Biol Sci Med Sci	Quantitative and qualitative role of antagonistic heterogeneity in genetics of blood lipids.	Low density lipoprotein cholesterol levels	29,902 European ancestry individuals		8p23.1		rs1461729-A	0.09	3E-6		2.2	[1.28-3.12] unit decrease	Affymetrix, Illumina [up to 2500000] (imputed)	N
655	chr8	9187241	9187242	rs1461729	31566214	Kulminski AM	2019-09-30	J Gerontol A Biol Sci Med Sci	Quantitative and qualitative role of antagonistic heterogeneity in genetics of blood lipids.	High density lipoprotein cholesterol levels	29,902 European ancestry individuals	NA	8p23.1		rs1461729-A	0.09	4E-9		1.19	[0.80-1.58] unit decrease	Affymetrix, Illumina [up to 2500000] (imputed)	N
655	chr8	9187241	9187242	rs1461729	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	8p23.1	NR	rs1461729-?	NR	2E-7		2.522105	[1.58-3.47] unit increase	Illumina [32003504] (imputed)	N
655	chr8	9187241	9187242	rs1461729	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	8p23.1	NR	rs1461729-?	NR	4E-17		1.280136	[0.98-1.58] unit increase	Illumina [31978362] (imputed)	N
655	chr8	9187241	9187242	rs1461729	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	8p23.1		rs1461729-?	NR	2E-10				NR [~ 8900000] (imputed)	N
655	chr8	9187241	9187242	rs1461729	23726366	Coram MA	2013-05-29	Am J Hum Genet	Genome-wide characterization of shared and distinct genetic components that influence blood lipid levels in ethnically diverse human populations.	HDL cholesterol	7,917 African American individuals, 3,506 Hispanic individuals	7,138 African American individuals	8p23.1	PPP1R3B	rs1461729-T	0.116	7E-9	(AA)	0.0355	[NR] unit decrease	Affymetrix [NR]	N
655	chr8	9187594	9187595	rs7004769	33109212	Chang H	2020-10-28	BMC Med	Genetic architecture of cardiometabolic risks in people living with HIV.	LDL cholesterol levels in HIV infection	3,095 European ancestry individuals, 3,189 African American individuals	NA	8p23.1	LOC157273	rs7004769-?		6E-6	(African American)	0.13150437	[0.075-0.188] unit increase	Illumina [13620258] (imputed)	N
655	chr8	9187594	9187595	rs7004769	28107422	de Vries PS	2017-01-20	PLoS One	Comparison of HapMap and 1000 Genomes Reference Panels in a Large-Scale Genome-Wide Association Study.	Fibrinogen levels	91,953 European ancestry individuals (imputed to HapMap)		8p23.1	LOC157273	rs7004769-?	NR	1E-6		0.0062	unit increase	Affymetrix, Illumina [2749429] (imputed)	N
655	chr8	9188761	9188762	rs11774915	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	8p23.1	LOC157273, TNKS	rs11774915-T	0.337128968995153	9E-9		0.0495	[0.033-0.066] unit increase	NR [5035015] (imputed)	N
655	chr8	9194977	9194978	rs13274716	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	8p23.1	PPP1R3B, TNKS	rs13274716-C	0.12	1E-175		28.3	z-score increase	Affymetrix [4311822] (imputed)	N
655	chr8	9195637	9195638	rs17149279	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body mass index and triglycerides (pairwise)	500,123 European ancestry individuals,16,962 East Asian, South Asian, Hispanic and African American ancestry individuals	NA	8p23.1	PPP1R3B-TNKS	rs17149279-T	0.2117	3E-12				Affymetrix, Illumina [2331072] (imputed)	N
655	chr8	9195637	9195638	rs17149279	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body mass index and HDL-C (pairwise)	509,429 European ancestry individuals, 16,962 East Asian, South Asian, Hispanic and African American ancestry individuals	NA	8p23.1	PPP1R3B-TNKS	rs17149279-T	0.2117	1E-11				Affymetrix, Illumina [2331072] (imputed)	N
655	chr8	9195637	9195638	rs17149279	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body fat percentage and triglycerides (pairwise)	268,505 European ancestry individuals, 10,072 East Asian, South Asian and African American ancestry individuals	NA	8p23.1	PPP1R3B-TNKS	rs17149279-T	0.2117	3E-10				Affymetrix, Illumina [2331072] (imputed)	N
655	chr8	9195637	9195638	rs17149279	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body fat percentage and HDL-C (pairwise)	277,811 European ancestry individuals, 10,022 East Asian, South Asian and African American ancestry individuals	NA	8p23.1	PPP1R3B-TNKS	rs17149279-T	0.2117	9E-9				Affymetrix, Illumina [2331072] (imputed)	N
655	chr8	9197358	9197359	rs117436012	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	8p23.1	NR	rs117436012-C	NR	3E-9		0.0309	[0.021-0.041] unit decrease	Affymetrix [9000000] (imputed)	N
655	chr8	9197660	9197661	rs958374	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference	1,254 whole genome sequenced European ancestry individuals, 3,074 whole genome sequenced individuals, 29,716 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 701 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,050 Mylopotamos (founder/genetic isolate) individuals, 883 Pomak (founder/genetic isolate) individuals	205,909 European ancestry individuals	8p23.1	RP11-115J16.1	rs958374-T	0.4958	6E-6		0.0401	[0.023-0.058] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
655	chr8	9198184	9198185	rs12546962	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	8p23.1	LOC157273	rs12546962-G	0.265	4E-6	(EA)	0.016	[0.0093-0.0231] kg/m2 increase	Affymetrix, Illumina [2550021]	N
655	chr8	9198184	9198185	rs12546962	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	8p23.1	LOC157273	rs12546962-G	0.262	5E-6		0.016	[0.0089-0.0223] kg/m2 increase	Affymetrix, Illumina [2550021]	N
655	chr8	9200349	9200350	rs1461727	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8p23.1	RP11-115J16.1	rs1461727-C	NR	8E-9		0.0193347	[0.013-0.026] unit decrease	Affymetrix [321114] (imputed)	N
655	chr8	9200349	9200350	rs1461727	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	8p23.1	RP11-115J16.1	rs1461727-C	NR	4E-9		0.0198214	[0.013-0.026] unit decrease	Affymetrix [321169] (imputed)	N
655	chr8	9200471	9200472	rs6990912	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	RP11-115J16.1	rs6990912-A	NR	2E-8		0.0182707	[0.012-0.025] unit decrease	Affymetrix [127266] (imputed)	N
655	chr8	9200471	9200472	rs6990912	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	RP11-115J16.1	rs6990912-A	NR	2E-8		0.0097097	[0.0063-0.0131] unit increase	Affymetrix [18485882] (imputed)	N
655	chr8	9202317	9202320	rs200250298	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Two-hour glucose	63,396 European ancestry individuals	NA	8p23.1	LOC157273	rs200250298-A	0.0957	2E-10		0.0888	[0.06-0.117] unit decrease	Affymetrix, Illumina [30098705] (imputed)	N
655	chr8	9205530	9205531	rs12550437	33649051	Duchen D	2021-03-01	Infect Immun	Host genome wide association study of infant susceptibility to <i>Shigella</i>-associated diarrhea.	Shigella-associated diarrhea	143 Bangladeshi cases, 446 Bangladeshi controls	NA	8p23.1	RP11-115J16.1	rs12550437-?	NR	1E-7		0.48	[NR]	Illumina [5729117] (imputed)	N
655	chr8	9206068	9206069	rs10102352	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Degree of unsaturation	115,006 European ancestry individuals	NA	8p23.1		rs10102352-A	0.394308	5E-13		0.0290904	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
655	chr8	9206068	9206069	rs10102352	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x long total sleep time interaction (2df test)	2,933 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, up to 7,870 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,975 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 32,171 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 616 East Asian ancestry long sleepers, up to 9,486 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 929 African American controls, 2,517 East Asian ancestry controls, up to 38,126 European ancestry controls, 10,063 Hispanic controls	8p23.1	AC022784.6	rs10102352-?	NR	2E-15		0.006988	[0.0051-0.0089] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
655	chr8	9206341	9206342	rs75120785	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	8p23.1	NR	rs75120785-G	NR	4E-16		0.0324	[0.025-0.04] unit increase	Affymetrix [9000000] (imputed)	N
655	chr8	9206341	9206342	rs75120785	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	8p23.1	NR	rs75120785-G	NR	4E-12		0.0276	[0.02-0.035] unit decrease	Affymetrix [9000000] (imputed)	N
655	chr8	9206341	9206342	rs75120785	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	8p23.1	NR	rs75120785-G	NR	2E-9		0.0239	[0.016-0.032] unit increase	Affymetrix [9000000] (imputed)	N
655	chr8	9206341	9206342	rs75120785	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	8p23.1	NR	rs75120785-G	NR	8E-16		0.0335	[0.025-0.042] unit increase	Affymetrix [9000000] (imputed)	N
655	chr8	9206341	9206342	rs75120785	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	8p23.1	NR	rs75120785-G	NR	2E-13		0.0294	[0.022-0.037] unit increase	Affymetrix [9000000] (imputed)	N
655	chr8	9206341	9206342	rs75120785	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	8p23.1	NR	rs75120785-G	NR	1E-12		0.0296	[0.021-0.038] unit increase	Affymetrix [9000000] (imputed)	N
655	chr8	9216923	9216924	rs12550199	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	8p23.1		rs12550199-?	NR	2E-11				NR [~ 8900000] (imputed)	N
655	chr8	9219886	9219887	rs34597048	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA			rs34597048-?	NR	5E-37		0.0455021	[0.038-0.053] unit decrease	Affymetrix [20259828] (imputed)	N
655	chr8	9221079	9221080	rs922049	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	8p23.1	NR	rs922049-A	0.640825135594062	8E-10		0.012195391	[0.0083-0.0161] unit increase	NR [NR]	N
655	chr8	9221326	9221327	rs13279515	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	8p23.1	NR	rs13279515-T	NR	3E-11		0.0232	[0.016-0.03] unit decrease	Affymetrix [9000000] (imputed)	N
655	chr8	9221326	9221327	rs13279515	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	8p23.1	NR	rs13279515-T	NR	2E-19		0.0314	[0.025-0.038] unit decrease	Affymetrix [9000000] (imputed)	N
655	chr8	9221326	9221327	rs13279515	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	8p23.1	Intergenic	rs13279515-T	NR	1E-6		0.042748	[0.025-0.06] unit decrease	Illumina [13520550] (imputed)	N
655	chr8	9228333	9228334	rs74463341	31006051	Kharazmi M	2019-04-20	Calcif Tissue Int	A Genome-Wide Association Study of Bisphosphonate-Associated Atypical Femoral Fracture.	Bisphosphonate-associated atypical femoral fracture	50 European ancestry cases, 1 Chilean ancestry case, 4,891 European ancestry controls	NA	8p23.1	intergenic	rs74463341-C	0.014	1E-6		7.027	[3.219-15.34]	Illumina [7585874] (imputed)	N
655	chr8	9228402	9228403	rs7008413	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	8p23.1	NR	rs7008413-A	0.882498	8E-34		0.0366631	[0.031-0.043] unit increase	NR [NR]	N
655	chr8	9229688	9229689	rs898797	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8p23.1	RP11-115J16.1, RP11-115J16.2	rs898797-C	NR	1E-8		0.0166198	[0.011-0.022] unit increase	Affymetrix [321114] (imputed)	N
655	chr8	9229688	9229689	rs898797	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	RP11-115J16.1, RP11-115J16.2	rs898797-C	NR	2E-11		0.0211398	[0.015-0.027] unit increase	Affymetrix [321114] (imputed)	N
655	chr8	9229688	9229689	rs898797	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	8p23.1	RP11-115J16.1, RP11-115J16.2	rs898797-C	NR	5E-9		0.0184644	[0.012-0.025] unit increase	Affymetrix [323858] (imputed)	N
655	chr8	9229688	9229689	rs898797	31235808	Shungin D	2019-06-24	Nat Commun	Genome-wide analysis of dental caries and periodontitis combining clinical and self-reported data.	Number of decayed, missing and filled tooth surfaces or use of dentures	14,976 European ancestry individuals with decayed, missing or filled tooth surface measurement, 11,816 Hispanic/Latino individuals with decayed, missing or filled tooth surface measurement, 77,714 European ancestry dentures cases, 383,317 European ancestry controls	NA	8p23.1	LOC157273	rs898797-T	0.59	2E-8		0.015	[0.0097-0.0203] unit increase	Affymetrix, Illumina [~ 8900000] (imputed)	N
655	chr8	9229688	9229689	rs898797	31235808	Shungin D	2019-06-24	Nat Commun	Genome-wide analysis of dental caries and periodontitis combining clinical and self-reported data.	Dentures	77,714 European ancestry cases, 383,317 European ancestry controls	NA	8p23.1	LOC157273	rs898797-T	0.59	5E-9		0.033	[0.022-0.044] unit increase	Affymetrix [at least 8900000] (imputed)	N
655	chr8	9233770	9233771	rs6986685	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	8p23.1	NR	rs6986685-A	NR	4E-10		0.0198	[0.014-0.026] unit increase	Affymetrix [9000000] (imputed)	N
655	chr8	9244263	9244264	rs150335055	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	8p23.1	Intergenic	rs150335055-T	0.999	2E-6	(AA)	0.214	unit increase	Illumina [NR] (imputed)	N
655	chr8	9244760	9244761	rs991025	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	8p23.1	NR	rs991025-T	NR	2E-9		0.0674	[0.045-0.089] unit decrease	Affymetrix [9000000] (imputed)	N
655	chr8	9246597	9246598	rs10087406	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	RP11-115J16.1, RP11-115J16.2	rs10087406-T	NR	1E-9		0.019379	[0.013-0.026] unit increase	Affymetrix [127266] (imputed)	N
655	chr8	9249209	9249210	rs4841139	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	RP11-115J16.1, RP11-115J16.2	rs4841139-G	NR	2E-8		0.0179625	[0.012-0.024] unit increase	Affymetrix [323858] (imputed)	N
655	chr8	9255502	9255503	rs17662231	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	8p23.1	NR	rs17662231-T	NR	3E-29		0.0901	[0.074-0.106] unit increase	Affymetrix [9000000] (imputed)	N
655	chr8	9255502	9255503	rs17662231	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	8p23.1	NR	rs17662231-T	NR	2E-18		0.0735	[0.057-0.09] unit decrease	Affymetrix [9000000] (imputed)	N
655	chr8	9255502	9255503	rs17662231	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	8p23.1	NR	rs17662231-T	NR	2E-18		0.0737	[0.057-0.09] unit decrease	Affymetrix [9000000] (imputed)	N
655	chr8	9257738	9257739	rs10099338	24351856	Nanayakkara S	2013-12-18	J Occup Health	An integrative study of the genetic, social and environmental determinants of chronic kidney disease characterized by tubulointerstitial damages in the North Central Region of Sri Lanka.	Glomerular filtration rate	301 Sri Lankan Sinhalese ancestry cases, 276 Sri Lankan Sinhalese ancestry controls	NA	8p23.1	LOC157273	rs10099338-G	0.10	4E-6		13.28	[NR] unit increase	Illumina [543848]	N
655	chr8	9259036	9259037	rs77599947	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	8p23.1	NR	rs77599947-C	NR	1E-17		0.0547	[0.042-0.067] unit increase	Affymetrix [9000000] (imputed)	N
655	chr8	9259036	9259037	rs77599947	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	8p23.1	NR	rs77599947-C	NR	4E-9		0.0393	[0.026-0.052] unit decrease	Affymetrix [9000000] (imputed)	N
655	chr8	9259036	9259037	rs77599947	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	8p23.1	NR	rs77599947-C	NR	7E-10		0.0413	[0.028-0.054] unit decrease	Affymetrix [9000000] (imputed)	N
655	chr8	9262537	9262538	rs6601304	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	RP11-115J16.1, RP11-115J16.2	rs6601304-C	NR	2E-8		0.0178334	[0.012-0.024] unit increase	Affymetrix [127266] (imputed)	N
655	chr8	9262537	9262538	rs6601304	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8p23.1	RP11-115J16.1, RP11-115J16.2	rs6601304-C	NR	5E-10		0.0178969	[0.012-0.024] unit increase	Affymetrix [321114] (imputed)	N
655	chr8	9262537	9262538	rs6601304	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	8p23.1	RP11-115J16.1, RP11-115J16.2	rs6601304-C	NR	3E-8		0.0159102	[0.01-0.022] unit increase	Affymetrix [321016] (imputed)	N
655	chr8	9264710	9264711	rs6601306	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	8p23.1	NR	rs6601306-T	NR	2E-10		0.0304	[0.021-0.04] unit decrease	Affymetrix [9000000] (imputed)	N
655	chr8	9264710	9264711	rs6601306	24792382	Park TJ	2014-04-30	Clin Chim Acta	Genome-wide association study identifies ALLC polymorphisms correlated with FEV? change by corticosteroid.	Response to inhaled corticosteroid treatment in asthma (change in FEV1)	189 Korean ancestry cases	NA	8p23.1	TNKS	rs6601306-?		4E-6		0.338	[NR] unit increase	Illumina [430487]	N
655	chr8	9265104	9265105	rs17662402	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	8p23.1	NR	rs17662402-C	0.053	2E-11		0.067	[0.047-0.087] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
655	chr8	9267116	9267117	rs9693857	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	RP11-115J16.1, RP11-115J16.2	rs9693857-T	NR	2E-12		0.0219812	[0.016-0.028] unit increase	Affymetrix [321114] (imputed)	N
655	chr8	9267116	9267117	rs9693857	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	8p23.1	RP11-115J16.1, RP11-115J16.2	rs9693857-T	NR	7E-10		0.0193044	[0.013-0.025] unit increase	Affymetrix [323858] (imputed)	N
655	chr8	9267116	9267117	rs9693857	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Systolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	8p23.1	intergenic	rs9693857-T	0.452	2E-15		0.337	[0.25-0.42] unit decrease	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
655	chr8	9267116	9267117	rs9693857	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Systolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	8p23.1	intergenic	rs9693857-T	0.452	1E-7	(EA, initial)	0.382	[0.24-0.52] unit decrease	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
655	chr8	9274375	9274376	rs142487520	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	8p23.1	Intergenic	rs142487520-C	0.998	1E-6	(AA)	0.204	unit increase	Illumina [NR] (imputed)	N
655	chr8	9275350	9275351	rs73185261	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	8p23.1	NR	rs73185261-T	NR	2E-11		0.0323	[0.023-0.042] unit decrease	Affymetrix [9000000] (imputed)	N
655	chr8	9276024	9276025	rs35847492	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	RP11-115J16.2	rs35847492-C	NR	2E-9		0.0198278	[0.013-0.026] unit decrease	Affymetrix [321114] (imputed)	N
655	chr8	9276024	9276025	rs35847492	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	8p23.1	intergenic	rs35847492-C	0.31667	7E-15		7.789	z score decrease	Illumina [18485882] (imputed)	N
655	chr8	9286974	9286975	rs11997533	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Pallidum volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	8p23.1	NR	rs11997533-?		5E-6				Illumina [4322238] (imputed)	N
655	chr8	9290344	9290345	rs4841146	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	8p23.1	Intergenic	rs4841146-A	0.2009	4E-11	(MTAG)	0.0136	[0.0095-0.0177] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
655	chr8	9297245	9297246	rs35353426	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	RP11-115J16.2	rs35353426-T	NR	5E-11		0.0225076	[0.016-0.029] unit increase	Affymetrix [321114] (imputed)	N
655	chr8	9297245	9297246	rs35353426	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	8p23.1	LOC157273	rs35353426-T	0.2916	2E-14		0.0026	[0.0018-0.0034] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
656	chr8	9308155	9308156	rs7828059	31816047	Boutin TS	2019-12-09	Hum Mol Genet	Insights into the genetic basis of retinal detachment.	Cataracts (operation)	21,679 British ancestry cases, 387,283 British ancestry controls	NA	8p23.1	LOC157273, TNKS	rs7828059-T	0.486	2E-8		1.056707	[1.036685-1.077116]	Affymetrix [NR] (imputed)	N
656	chr8	9315679	9315680	rs66494175	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	8p23.1	RP11-375N15.1	rs66494175-T	NR	1E-9		0.0208623	[0.014-0.028] unit increase	Affymetrix [323858] (imputed)	N
656	chr8	9321542	9321543	rs9918737	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	ENSG00000249050	rs9918737-T	NR	5E-8		0.0095319	[0.0061-0.0129] unit decrease	Affymetrix [18485882] (imputed)	N
656	chr8	9328925	9328926	rs7007562	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	8p23.1	NR	rs7007562-G	NR	8E-29		0.0285	[0.023-0.034] unit increase	Affymetrix [9000000] (imputed)	N
656	chr8	9328925	9328926	rs7007562	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	8p23.1	NR	rs7007562-G	NR	4E-11		0.0169	[0.012-0.022] unit increase	Affymetrix [9000000] (imputed)	N
656	chr8	9336713	9336714	rs7819054	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8p23.1	PPP1R3B	rs7819054-?	NR	8E-6	(LPE 20:4)	0.16925958	[0.095-0.244] unit decrease	Affymetrix [at least 2500000] (imputed)	N
656	chr8	9336713	9336714	rs7819054	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8p23.1	PPP1R3B	rs7819054-?	NR	5E-6	(LPC 20:4)	0.17339629	[0.099-0.248] unit decrease	Affymetrix [at least 2500000] (imputed)	N
656	chr8	9340931	9340932	rs6994287	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	8p23.1		rs6994287-A	0.4055	1E-12		0.0102	[0.0075-0.0129] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
656	chr8	9340931	9340932	rs6994287	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	8p23.1	Intergenic	rs6994287-A	0.4055	7E-14	(MTAG)	0.01	[0.0075-0.0125] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
656	chr8	9353864	9353865	rs6997629	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	RP11-375N15.1	rs6997629-G	NR	7E-9		0.0194485	[0.013-0.026] unit increase	Affymetrix [321114] (imputed)	N
656	chr8	9355783	9355784	rs11249926	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	8p23.1	NR	rs11249926-T	NR	3E-10		0.0151	[0.01-0.02] unit increase	Affymetrix [9000000] (imputed)	N
656	chr8	9367742	9367743	rs1350559	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	8p23.1	TNKS	rs1350559-C	0.598654	2E-10		0.0136979	[0.0095-0.0179] unit decrease	Affymetrix [NR] (imputed)	N
656	chr8	9367742	9367743	rs1350559	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	8p23.1	Intergenic	rs1350559-C	0.6138	5E-11	(MTAG)	0.0121	[0.0086-0.0156] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
656	chr8	9367742	9367743	rs1350559	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	8p23.1	Intergenic	rs1350559-C	0.6138	5E-11		0.0132	[0.0093-0.0171] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
656	chr8	9367742	9367743	rs1350559	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	8p23.1	Intergenic	rs1350559-C	0.614	5E-9		0.0136	[0.0091-0.0181] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
656	chr8	9370558	9370559	rs10100760	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	RP11-375N15.2	rs10100760-T	NR	6E-9		0.0185559	[0.012-0.025] unit increase	Affymetrix [323858] (imputed)	N
656	chr8	9370558	9370559	rs10100760	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	RP11-375N15.2	rs10100760-T	NR	7E-10		0.0196666	[0.013-0.026] unit increase	Affymetrix [127266] (imputed)	N
656	chr8	9370558	9370559	rs10100760	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	RP11-375N15.2	rs10100760-T	NR	9E-12		0.0215165	[0.015-0.028] unit increase	Affymetrix [321114] (imputed)	N
656	chr8	9370558	9370559	rs10100760	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	8p23.1	RP11-375N15.2	rs10100760-T	NR	7E-10		0.0195217	[0.013-0.026] unit increase	Affymetrix [323858] (imputed)	N
656	chr8	9370558	9370559	rs10100760	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	8p23.1	NR	rs10100760-T	0.4238	1E-6	(Superior Temporal)	9.47034	[5.67-13.27] unit increase	Affymetrix, Illumina [NR]	N
656	chr8	9376820	9376820	rs35904419	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	8p23.1	PPP1R3B, TNKS	rs35904419-?		8E-6	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
656	chr8	9376820	9376820	rs35904419	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	8p23.1	PPP1R3B, TNKS	rs35904419-?	NR	3E-6	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
656	chr8	9376820	9376820	rs35904419	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	8p23.1	PPP1R3B, TNKS	rs35904419-?	NR	2E-6				Affymetrix, Illumina [18800000] (imputed)	N
656	chr8	9376820	9376820	rs35904419	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	8p23.1	PPP1R3B, TNKS	rs35904419-?	NR	5E-8	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
656	chr8	9376820	9376820	rs35904419	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	8p23.1	PPP1R3B, TNKS	rs35904419-?	NR	1E-8				Affymetrix, Illumina [18800000] (imputed)	N
656	chr8	9380131	9380132	rs7830939	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	RP11-375N15.2	rs7830939-A	NR	2E-9		0.0201022	[0.014-0.027] unit decrease	Affymetrix [321114] (imputed)	N
656	chr8	9380131	9380132	rs7830939	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	ENSG00000272267	rs7830939-A	NR	3E-9		0.010393	[0.007-0.0138] unit increase	Affymetrix [18485882] (imputed)	N
656	chr8	9380131	9380132	rs7830939	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	8p23.1	NR	rs7830939-G	0.685244553037887	1E-15		0.016091421	[0.012-0.02] unit increase	NR [NR]	N
656	chr8	9380131	9380132	rs7830939	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	8p23.1	intergenic	rs7830939-A	0.3304	7E-15		7.776	z score decrease	Illumina [18485882] (imputed)	N
656	chr8	9389240	9389241	rs13262031	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large VLDL	115,082 European ancestry individuals	NA	8p23.1		rs13262031-T	0.36817	3E-11		0.0272919	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
656	chr8	9389240	9389241	rs13262031	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small LDL	115,082 European ancestry individuals	NA	8p23.1		rs13262031-T	0.36817	2E-8		0.0233974	[0.015-0.032] unit decrease	NR [11722792] (imputed)	N
656	chr8	9389240	9389241	rs13262031	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium VLDL	115,082 European ancestry individuals	NA	8p23.1		rs13262031-T	0.36817	6E-11		0.02737	[0.019-0.036] unit decrease	NR [11722792] (imputed)	N
656	chr8	9389240	9389241	rs13262031	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large VLDL	115,082 European ancestry individuals	NA	8p23.1		rs13262031-T	0.36817	8E-11		0.0269534	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
656	chr8	9389240	9389241	rs13262031	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in VLDL	115,082 European ancestry individuals	NA	8p23.1		rs13262031-T	0.36817	2E-11		0.027666	[0.02-0.036] unit decrease	NR [11722792] (imputed)	N
656	chr8	9389240	9389241	rs13262031	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total triglycerides levels	115,082 European ancestry individuals	NA	8p23.1		rs13262031-T	0.36817	2E-10		0.0264129	[0.018-0.035] unit decrease	NR [11722792] (imputed)	N
656	chr8	9389240	9389241	rs13262031	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large VLDL	115,082 European ancestry individuals	NA	8p23.1		rs13262031-T	0.36817	4E-10		0.0258905	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
656	chr8	9389240	9389241	rs13262031	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large VLDL	115,082 European ancestry individuals	NA	8p23.1		rs13262031-T	0.36817	5E-10		0.02591	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
656	chr8	9389240	9389241	rs13262031	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in VLDL	115,082 European ancestry individuals	NA	8p23.1		rs13262031-T	0.36817	3E-8		0.0233639	[0.015-0.032] unit decrease	NR [11722792] (imputed)	N
656	chr8	9389240	9389241	rs13262031	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large VLDL	115,082 European ancestry individuals	NA	8p23.1		rs13262031-T	0.36817	3E-9		0.0245837	[0.016-0.033] unit decrease	NR [11722792] (imputed)	N
656	chr8	9389240	9389241	rs13262031	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large VLDL	115,082 European ancestry individuals	NA	8p23.1		rs13262031-T	0.36817	1E-9		0.025367	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
656	chr8	9389240	9389241	rs13262031	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	8p23.1		rs13262031-T	0.36817	1E-11		0.0279827	[0.02-0.036] unit decrease	NR [11722792] (imputed)	N
656	chr8	9389240	9389241	rs13262031	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	8p23.1		rs13262031-T	0.36817	6E-9		0.024263	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
656	chr8	9389240	9389241	rs13262031	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	8p23.1		rs13262031-T	0.36817	3E-9		0.0246189	[0.016-0.033] unit decrease	NR [11722792] (imputed)	N
656	chr8	9389240	9389241	rs13262031	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	8p23.1		rs13262031-T	0.36817	3E-12		0.0288815	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
656	chr8	9389240	9389241	rs13262031	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large VLDL particles	115,082 European ancestry individuals	NA	8p23.1		rs13262031-T	0.36817	5E-10		0.0257366	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
656	chr8	9389240	9389241	rs13262031	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large VLDL particles	115,082 European ancestry individuals	NA	8p23.1		rs13262031-T	0.36817	4E-10		0.0259554	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
656	chr8	9389240	9389241	rs13262031	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	8p23.1		rs13262031-T	0.36817	1E-10		0.0269145	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
656	chr8	9389240	9389241	rs13262031	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	8p23.1		rs13262031-T	0.36817	3E-8		0.0233103	[0.015-0.032] unit decrease	NR [11722792] (imputed)	N
656	chr8	9389240	9389241	rs13262031	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	8p23.1		rs13262031-T	0.36817	2E-11		0.0279856	[0.02-0.036] unit decrease	NR [11722792] (imputed)	N
656	chr8	9389240	9389241	rs13262031	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for VLDL particles	115,082 European ancestry individuals	NA	8p23.1		rs13262031-T	0.36817	5E-13		0.0290641	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
656	chr8	9389240	9389241	rs13262031	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	8p23.1	RP11-375N15.2	rs13262031-T	NR	2E-9		0.0195429	[0.013-0.026] unit decrease	Affymetrix [323858] (imputed)	N
656	chr8	9389240	9389241	rs13262031	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	8p23.1	TNKS	rs13262031-?	NR	1E-14		0.021	[0.016-0.026] unit decrease	Affymetrix [5701386] (imputed)	N
656	chr8	9390528	9390529	rs6980728	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	RP11-375N15.2	rs6980728-C	NR	1E-8		0.0183914	[0.012-0.025] unit decrease	Affymetrix [323858] (imputed)	N
656	chr8	9390528	9390529	rs6980728	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	RP11-375N15.2	rs6980728-C	NR	1E-9		0.0195219	[0.013-0.026] unit decrease	Affymetrix [127266] (imputed)	N
656	chr8	9395531	9395532	rs6601327	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	8p23.1		rs6601327-G	0.381471	2E-10		0.0255946	[0.018-0.033] unit decrease	NR [11722792] (imputed)	N
656	chr8	9395531	9395532	rs6601327	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	8p23.1	TNKS	rs6601327-?	NR	1E-7		1.1	[1.06-1.14]	Illumina [at least 5000000] (imputed)	N
656	chr8	9395531	9395532	rs6601327	23502783	Weinhold N	2013-03-17	Nat Genet	The CCND1 c.870G>A polymorphism is a risk factor for t(11;14)(q13;q32) multiple myeloma.	Multiple myeloma (hyperdiploidy)	up to 1,660 European ancestry cases, 7,306 European ancestry controls		8p23.1	NR	rs6601327-G	0.37	8E-6	(HD vs. controls)	1.27	[1.14-1.41]	Illumina [414804]	N
656	chr8	9406836	9406837	rs12156017	29970889	Day FR	2018-07-03	Nat Commun	Elucidating the genetic basis of social interaction and isolation.	Regular attendance at a religious group	66,259 European ancestry cases, 386,043 European ancestry controls	NA	8p23.1	LOC157273, TNKS, MIR597	rs12156017-C	0.351705	2E-8		0.00432008	[0.0028-0.0058] unit decrease	NR [NR] (imputed)	N
656	chr8	9408270	9408271	rs4840425	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	8p23.1	NR	rs4840425-A	0.6094	1E-9	(Superior Temporal)	12.015912	[8.15-15.88] unit increase	Affymetrix, Illumina [NR]	N
656	chr8	9414641	9414642	rs7013834	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	8p23.1	TNKS	rs7013834-A	0.116	1E-11		0.0125	[0.009-0.016] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
656	chr8	9428672	9428673	rs10103970	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8p23.1	NR	rs10103970-C	0.01045	8E-9	(NNT)	0.3544	NR unit increase	Illumina [1671387] (imputed)	N
657	chr8	9438719	9438720	rs6422354	27397699	Pei YF	2016-07-07	Bone	Genome-wide association meta-analyses identified 1q43 and 2q32.2 for hip Ward's triangle areal bone mineral density.	Bone mineral density (Ward's triangle area)	4,305 European ancestry individuals,1,579 Chinese Han ancestry individuals, 845 African-American individuals, 446 Hispanic individuals		8p23.1	TNKS	rs6422354-G	NR	2E-6		0.16	[NR] unit increase	Affymetrix, Illumina [at least 9551331] (imputed)	N
657	chr8	9459932	9459933	rs117357349	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	8p23.1	NR	rs117357349-T	NR	4E-10		0.0596	[0.041-0.078] unit increase	Affymetrix [9000000] (imputed)	N
657	chr8	9459932	9459933	rs117357349	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	8p23.1	NR	rs117357349-T	NR	1E-10		0.0645	[0.045-0.084] unit decrease	Affymetrix [9000000] (imputed)	N
657	chr8	9473373	9473374	rs35154340	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	8p23.1	NR	rs35154340-C	0.0	9E-6		2.03	[1.72-2.34]	Illumina [8468885] (imputed)	N
657	chr8	9473428	9473429	rs33994795	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Triglycerides	429,011 European ancestry individuals	NA	8p23.1		rs33994795-C	0.36	6E-19		0.017	mmol/L decrease	NR [NR] (imputed)	N
657	chr8	9473428	9473429	rs33994795	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	8p23.1		rs33994795-C	0.36	2E-24				NR [NR] (imputed)	N
657	chr8	9473428	9473429	rs33994795	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	8p23.1		rs33994795-C	0.36	2E-10		0.01	% increase	NR [NR] (imputed)	N
657	chr8	9473428	9473429	rs33994795	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Aspartate aminotransferase levels	424,778 European ancestry individuals	NA	8p23.1		rs33994795-C	0.36	1E-19		0.018	U/L increase	NR [NR] (imputed)	N
657	chr8	9473428	9473429	rs33994795	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Alanine aminotransferase levels	429,203 European ancestry individuals	NA	8p23.1		rs33994795-C	0.36	7E-19		0.018	U/L increase	NR [NR] (imputed)	N
657	chr8	9478273	9478274	rs78876374	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	8p23.1	NR	rs78876374-T	NR	2E-20		0.0487	[0.038-0.059] unit decrease	Affymetrix [9000000] (imputed)	N
657	chr8	9487812	9487813	rs4075359	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	8p23.1		rs4075359-T	0.374157	7E-10		0.025438	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
657	chr8	9493128	9493129	rs7846399	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	8p23.1		rs7846399-T	0.36424	4E-11		0.0273106	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
657	chr8	9493128	9493129	rs7846399	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of chylomicrons and extremely large VLDL particles	115,082 European ancestry individuals	NA	8p23.1		rs7846399-T	0.36424	7E-11		0.0269052	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
657	chr8	9496117	9496118	rs13275502	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	TNKS	rs13275502-T	NR	6E-11		0.0259082	[0.018-0.034] unit decrease	Affymetrix [321114] (imputed)	N
657	chr8	9496117	9496118	rs13275502	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	8p23.1	intergenic	rs13275502-A	0.80624	8E-11		6.497	z score increase	Illumina [18485882] (imputed)	N
657	chr8	9500243	9500244	rs11249932	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	TNKS	rs11249932-A	NR	4E-8		0.0196167	[0.013-0.027] unit decrease	Affymetrix [323858] (imputed)	N
657	chr8	9500243	9500244	rs11249932	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	TNKS	rs11249932-A	NR	4E-9		0.0209576	[0.014-0.028] unit decrease	Affymetrix [127266] (imputed)	N
657	chr8	9510066	9510067	rs4841192	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8p23.1	TNKS	rs4841192-G	NR	1E-10		0.0196349	[0.014-0.026] unit increase	Affymetrix [321114] (imputed)	N
657	chr8	9510066	9510067	rs4841192	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	8p23.1	TNKS	rs4841192-G	NR	2E-8		0.017136	[0.011-0.023] unit increase	Affymetrix [321169] (imputed)	N
657	chr8	9522916	9522917	rs66531120	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8p23.1	TNKS	rs66531120-C	NR	5E-8		0.0192532	[0.012-0.026] unit increase	Affymetrix [321114] (imputed)	N
657	chr8	9533398	9533399	rs4427176	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	8p23.1	TNKS	rs4427176-T	NR	3E-7		0.0356511	[0.022-0.049] unit increase	Illumina [13520550] (imputed)	N
657	chr8	9555906	9555907	rs10903317	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	TNKS	rs10903317-A	NR	5E-9		0.0195243	[0.013-0.026] unit decrease	Affymetrix [321114] (imputed)	N
657	chr8	9556499	9556500	rs11249939	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first birth	542,901 European ancestry individuals	NA	8p23.1	TNKS	rs11249939-A	0.6107	2E-10		0.0633	[0.044-0.083] unit increase	NR [9744772] (imputed)	N
657	chr8	9556499	9556500	rs11249939	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	8p23.1		rs11249939-?	NR	9E-9				NR [~ 8900000] (imputed)	N
657	chr8	9566157	9566157	rs149114426	30894546	Ivarsdottir EV	2019-03-20	Nat Commun	Sequence variation at ANAPC1 accounts for 24% of the variability in corneal endothelial cell density.	Corneal endothelial cell size variation coefficient	6,125 Icelandic ancestry individuals	NA	8p23.1	NR	rs149114426-TG		6E-7		0.162	[NR] unit increase	Illumina [NR]	N
657	chr8	9566881	9566882	rs117157809	32503578	Yang DW	2020-06-05	J Transl Med	Genome-wide association study identifies genetic susceptibility loci and pathways of radiation-induced acute oral mucositis.	Response to radiotherapy in nasopharyngeal carcinoma (acute oral mucositis)	349 East Asian ancestry cases, 1,118 East Asian ancestry treated controls	NA	8p23.1	TNKS	rs117157809-C	0.01	6E-6		3.72	[2.10-6.57]	Illumina [3968928] (imputed)	N
658	chr8	9601698	9601699	rs12545912	23502783	Weinhold N	2013-03-17	Nat Genet	The CCND1 c.870G>A polymorphism is a risk factor for t(11;14)(q13;q32) multiple myeloma.	Multiple myeloma (hyperdiploidy)	up to 1,660 European ancestry cases, 7,306 European ancestry controls		8p23.1	NR	rs12545912-C	0.24	7E-6	(HD vs. controls)	1.3	[1.16-1.45]	Illumina [414804]	N
658	chr8	9604065	9604066	rs35169606	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	TNKS	rs35169606-G	NR	7E-9		0.0188626	[0.012-0.025] unit increase	Affymetrix [323858] (imputed)	N
658	chr8	9604065	9604066	rs35169606	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	TNKS	rs35169606-G	NR	1E-9		0.0198555	[0.013-0.026] unit increase	Affymetrix [127266] (imputed)	N
658	chr8	9604065	9604066	rs35169606	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	TNKS	rs35169606-G	NR	9E-10		0.0197149	[0.013-0.026] unit increase	Affymetrix [321114] (imputed)	N
658	chr8	9604065	9604066	rs35169606	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	8p23.1	TNKS	rs35169606-G	NR	1E-8		0.0184954	[0.012-0.025] unit increase	Affymetrix [323858] (imputed)	N
658	chr8	9604065	9604066	rs35169606	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	8p23.1		rs35169606-T	0.612	1E-9		0.013	[0.0091-0.0169] unit increase	Affymetrix [up to 90000000] (imputed)	N
658	chr8	9607940	9607941	rs35341965	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting leucine	4,734 individuals	NA	8p23.1		rs35341965-T	0.117023975	2E-8		0.182244	[0.12-0.25] mmol/l decrease	Illumina [7701709] (imputed)	N
658	chr8	9608095	9608096	rs4289816	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	8p23.1	NR	rs4289816-C	NR	6E-25		0.0395	[0.032-0.047] unit increase	Affymetrix [9000000] (imputed)	N
658	chr8	9619347	9619348	rs4383974	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	8p23.1	NR	rs4383974-?		2E-9	(Inferior fronto-occipital fasciculus)			NR [8955960] (imputed)	N
658	chr8	9619347	9619348	rs4383974	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	8p23.1		rs4383974-?	NR	2E-17		0.0182957	[0.014-0.023] unit decrease	Affymetrix [20259828] (imputed)	N
658	chr8	9619347	9619348	rs4383974	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption interaction (2df test)	63,608 European ancestry drinkers, 10,193 African American or Afro-Caribbean heavy drinkers,  2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,494 European ancestry non-drinkers, 11,224 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,002 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,452 Hispanic drinkers, 43,316 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,945 Asian ancestry non-drinkers, 6,925 Hispanic non-drinkers	8p23.1	TNKS	rs4383974-C	0.7	2E-13	(AA, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
658	chr8	9619908	9619909	rs35231275	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Pulse pressure x alcohol consumption interaction (2df test)	91,099 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	238,053 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,447 Hispanic ancestry drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic ancestry non-drinkers	8p23.1	TNKS	rs35231275-A	0.31	1E-8	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
658	chr8	9628752	9628753	rs11249945	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume x hypertension interaction (2df)	46,055 European ancestry individuals	NA	8p23.1	TNKS	rs11249945-A	0.35	1E-7				Affymetrix, Illumina [9900000] (imputed)	N
658	chr8	9628752	9628753	rs11249945	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume (adjusted for hypertension)	46,055 European ancestry individuals	NA	8p23.1	TNKS	rs11249945-A	0.35	4E-7		0.032	[0.02-0.044] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
658	chr8	9628752	9628753	rs11249945	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	48,454 European ancestry individuals	NA	8p23.1	TNKS	rs11249945-A	NR	4E-8		0.0337	[0.022-0.046] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
658	chr8	9634474	9634475	rs79488099	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	8p23.1		rs79488099-?	NR	9E-11				NR [~ 8900000] (imputed)	N
658	chr8	9643532	9643533	rs77717636	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Deep white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	8p23.1	TNKS	rs77717636-A	0.9126	4E-6		0.056	[0.032-0.08] unit increase	Affymetrix, Illumina [NR] (imputed)	N
658	chr8	9644658	9644659	rs2048656	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	8p23.1	NR	rs2048656-A	NR	1E-7		1.06	[NR]	Illumina [7158791] (imputed)	N
658	chr8	9653129	9653130	rs59480703	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	8p23.1		rs59480703-C	0.1936	4E-12		0.0123	[0.0088-0.0158] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
658	chr8	9653144	9653145	rs9286060	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption interaction (2df test)	63,607 European ancestry drinkers, 10,193 African American or Afro-Caribbean drinkers, 2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,492 European ancestry non-drinkers, 11,223 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,058 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	8p23.1	TNKS	rs9286060-A	0.38	2E-13	(AA, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
658	chr8	9657070	9657071	rs899415061	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antithrombotic agents)	67,653 European ancestry cases, 85,986 European ancestry controls, 54,220 East Asian ancestry cases, 124,506 East Asian ancestry controls	NA	8p23.1		rs899415061-C	NR	4E-8		0.8772	[0.56-1.19] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
658	chr8	9657070	9657071	rs899415061	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antithrombotic agents)	54,220 East Asian ancestry cases, 124,506 East Asian ancestry controls	NA	8p23.1		rs899415061-C	7.842E-4	4E-8		0.8771964	[0.56-1.19] unit increase	Illumina [13429980] (imputed)	N
658	chr8	9657305	9657306	rs6999942	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	TNKS	rs6999942-A	NR	2E-10		0.025564	[0.018-0.033] unit decrease	Affymetrix [321114] (imputed)	N
658	chr8	9665073	9665074	rs13249447	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	8p23.1	NR	rs13249447-?		4E-8	(Inferior fronto-occipital fasciculus)			NR [8955960] (imputed)	N
658	chr8	9665464	9665465	rs13282477	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	8p23.1	NR	rs13282477-C	0.113212413023214	6E-10		0.01400478	[0.0096-0.0184] unit decrease	NR [NR]	N
658	chr8	9669334	9669335	rs28634186	34456681	Song M	2021-08-12	Front Neurosci	Genome-Wide Meta-Analysis Identifies Two Novel Risk Loci for Epilepsy.	Epilepsy	19,122 European ancestry cases, 168,998 European ancestry controls, 2,143 Japanese ancestry cases, 210,310 Japanese ancestry controls, 5,087 cases, 395,209 controls	NA	8p23.1		rs28634186-T	NR	4E-8		1.056		NR [NR]	N
658	chr8	9673923	9673923	rs142669961	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	TNKS	rs142669961-T	NR	3E-11		0.0215109	[0.015-0.028] unit decrease	Affymetrix [323858] (imputed)	N
658	chr8	9673923	9673923	rs142669961	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	TNKS	rs142669961-T	NR	8E-13		0.0231225	[0.017-0.029] unit decrease	Affymetrix [127266] (imputed)	N
658	chr8	9677797	9677798	rs4840441	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	8p23.1	TNKS	rs4840441-A	NR	3E-11		0.0211704	[0.015-0.027] unit decrease	Affymetrix [323858] (imputed)	N
658	chr8	9678028	9678029	rs4841229	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8p23.1	TNKS	rs4841229-C	NR	5E-8		0.0160291	[0.01-0.022] unit decrease	Affymetrix [321114] (imputed)	N
658	chr8	9679633	9679634	rs1976671	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	TNKS	rs1976671-G	NR	2E-14		0.0242935	[0.018-0.03] unit decrease	Affymetrix [321114] (imputed)	N
658	chr8	9679633	9679634	rs1976671	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption interaction (2df test)	63,608 European ancestry drinkers, 10,193 African American or Afro-Caribbean heavy drinkers,  2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,494 European ancestry non-drinkers, 11,224 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,002 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,452 Hispanic drinkers, 43,316 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,945 Asian ancestry non-drinkers, 6,925 Hispanic non-drinkers	8p23.1	TNKS	rs1976671-A	0.62	7E-18	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
658	chr8	9680399	9680400	rs55868514	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption interaction (2df test)	63,607 European ancestry drinkers, 10,193 African American or Afro-Caribbean drinkers, 2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,492 European ancestry non-drinkers, 11,223 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,058 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	8p23.1	TNKS	rs55868514-T	0.38	2E-13	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
658	chr8	9682921	9682922	rs73207111	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure	35,269 European ancestry cases, 63,451 European ancestry controls	NA	8p23.1	NR	rs73207111-A	0.0855165	1E-6		1.068	[1.04-1.1]	Affymetrix [7791636] (imputed)	N
658	chr8	9683357	9683358	rs4841235	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	8p23.1	TNKS, MSRA	rs4841235-?	NR	4E-14	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
658	chr8	9683357	9683358	rs4841235	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	8p23.1	TNKS, MSRA	rs4841235-?	NR	3E-7				Affymetrix, Illumina [18800000] (imputed)	N
658	chr8	9683357	9683358	rs4841235	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	8p23.1	TNKS, MSRA	rs4841235-?	NR	3E-8				Affymetrix, Illumina [18800000] (imputed)	N
658	chr8	9683357	9683358	rs4841235	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	8p23.1	TNKS, MSRA	rs4841235-?		5E-15	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
658	chr8	9683357	9683358	rs4841235	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	8p23.1	TNKS, MSRA	rs4841235-?	NR	3E-9	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
658	chr8	9683357	9683358	rs4841235	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	8p23.1	TNKS, MSRA	rs4841235-?	NR	3E-6				Affymetrix, Illumina [18800000] (imputed)	N
658	chr8	9683357	9683358	rs4841235	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	8p23.1	TNKS, MSRA	rs4841235-?	NR	8E-10	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
658	chr8	9683357	9683358	rs4841235	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	8p23.1	TNKS, MSRA	rs4841235-?	NR	7E-7				Affymetrix, Illumina [18800000] (imputed)	N
658	chr8	9684198	9684199	rs17150537	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	ENSG00000239065	rs17150537-C	NR	1E-8		0.0099119	[0.0065-0.0133] unit decrease	Affymetrix [18485882] (imputed)	N
658	chr8	9684198	9684199	rs17150537	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	8p23.1	NR	rs17150537-G	0.176320289962472	1E-9		0.0072913426	[0.0049-0.0097] unit decrease	NR [NR]	N
658	chr8	9684612	9684613	rs62491261	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	8p23.1	Intergenic	rs62491261-A	0.2169	2E-8	(MTAG)	0.0112	[0.0073-0.0151] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
658	chr8	9684882	9684883	rs4841237	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	8p23.1	MSRA	rs4841237-A	0.746	3E-9		0.008	[0.0053-0.0107] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
658	chr8	9685529	9685530	rs62491264	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	8p23.1	Intergenic	rs62491264-C	0.7054	4E-11		0.0141	[0.01-0.0182] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
658	chr8	9685719	9685720	rs4554470	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	snoU13	rs4554470-G	NR	3E-8		0.0177414	[0.011-0.024] unit decrease	Affymetrix [321114] (imputed)	N
658	chr8	9686296	9686297	rs1980099	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	8p23.1	Intergenic	rs1980099-A	0.8148	1E-10	(MTAG)	0.0109	[0.0076-0.0142] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
658	chr8	9693555	9693556	rs56662938	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	8p23.1	TNKS, LINC00599, MIR124-1	rs56662938-A	0.132	3E-6		1.07853	[1.05-1.11]	NR [9372253] (imputed)	N
659	chr8	9702259	9702260	rs34389983	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	snoU13	rs34389983-C	NR	1E-8		0.0183824	[0.012-0.025] unit decrease	Affymetrix [127266] (imputed)	N
659	chr8	9710450	9710451	rs62491302	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	8p23.1	Intergenic	rs62491302-G	0.8638	1E-8		0.0188	[0.012-0.025] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
659	chr8	9712335	9712336	rs2090064	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	8p23.1	Intergenic	rs2090064-?		3E-7		1.0416667	[1.02-1.05]	Illumina [7645193] (imputed)	N
659	chr8	9712335	9712336	rs2090064	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	8p23.1	Intergenic	rs2090064-?		5E-7		1.4492754	[1.25-1.67]	Illumina [7645193] (imputed)	N
659	chr8	9717367	9717368	rs7838965	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	snoU13	rs7838965-T	NR	1E-8		0.0223034	[0.015-0.03] unit decrease	Affymetrix [127266] (imputed)	N
659	chr8	9718746	9718747	rs4439133	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	8p23.1		rs4439133-T	0.336027	2E-10		0.0270967	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
659	chr8	9718746	9718747	rs4439133	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to monounsaturated fatty acids	115,006 European ancestry individuals	NA	8p23.1		rs4439133-T	0.336021	1E-8		0.024235	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
659	chr8	9722953	9722954	rs12680442	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	ENSG00000239065	rs12680442-C	NR	6E-9		0.0099667	[0.0066-0.0133] unit decrease	Affymetrix [18485882] (imputed)	N
659	chr8	9724398	9724398	rs766272875	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	8p23.1		rs766272875-?	NR	7E-18		0.030531	[0.024-0.038] unit decrease	Affymetrix [20259828] (imputed)	N
659	chr8	9730662	9730663	rs62491354	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	8p23.1	TNKS	rs62491354-A	0.1341	8E-13		0.2565	[0.19-0.33] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
659	chr8	9732341	9732342	rs7008654	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	8p23.1	NR	rs7008654-?	NR	1E-9				Affymetrix [NR]	N
659	chr8	9737662	9737663	rs35241117	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8p23.1	snoU13	rs35241117-T	NR	5E-11		0.0192168	[0.013-0.025] unit increase	Affymetrix [321114] (imputed)	N
659	chr8	9737662	9737663	rs35241117	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	snoU13	rs35241117-T	NR	7E-10		0.0196002	[0.013-0.026] unit increase	Affymetrix [321114] (imputed)	N
659	chr8	9737662	9737663	rs35241117	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	8p23.1	snoU13	rs35241117-T	NR	5E-9		0.0171313	[0.011-0.023] unit increase	Affymetrix [321169] (imputed)	N
659	chr8	9740862	9740863	rs11249965	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x short total sleep time interaction (2df test)	2,990 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,300 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, at least 11,842 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,350 European ancestry controls, 4,047 Hispanic/Latino controls	at least 220 African American short sleepers, 326 East Asian ancestry short sleepers, up to 5,288 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 1,292 East Asian ancestry controls, up to 20,844 European ancestry controls, 10,062 Hispanic controls	8p23.1	AC022784.6	rs11249965-?	NR	4E-10		0.01117	[0.007-0.0154] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
659	chr8	9745797	9745798	rs17150703	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Body mass index variance	346,393 European ancestry individuals	NA	8p23.1	MSRA	rs17150703-?	NR	1E-9				NR [5554549] (imputed)	N
659	chr8	9745797	9745798	rs17150703	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Body mass index	346,393 European ancestry individuals	NA	8p23.1	MSRA	rs17150703-?	NR	2E-11				NR [5554549] (imputed)	N
659	chr8	9745797	9745798	rs17150703	20421936	Scherag A	2010-04-22	PLoS Genet	Two new Loci for body-weight regulation identified in a joint analysis of genome-wide association studies for early-onset extreme obesity in French and german study groups.	Obesity (early onset extreme)	1,138 European ancestry cases, 1,120 European ancestry normal or lean controls	1,181 European ancestry cases, 1,960 European ancestry normal or lean controls, 981 European ancestry cases  and 1,430 European ancestry controls from 715 families	8p23.1	MSRA, TNKS	rs17150703-A	NR	2E-8		1.18	[1.03-1.35]	Affymetrix, Illumina [1596878] (imputed)	N
659	chr8	9757599	9757600	rs2272026	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	LINC00599	rs2272026-C	NR	1E-9		0.0205189	[0.014-0.027] unit decrease	Affymetrix [321114] (imputed)	N
659	chr8	9763580	9763581	rs62489493	34002096	Mullins N	2021-05-17	Nat Genet	Genome-wide association study of more than 40,000 bipolar disorder cases provides new insights into the underlying biology.	Bipolar disorder	41,917 European ancestry cases, 371,549 European ancestry controls	NA	8p23.1	miR124-1	rs62489493-C	0.872	3E-11		0.91421	[0.89-0.94]	Affymetrix, Illumina [7549318] (imputed)	N
659	chr8	9783788	9783789	rs17150793	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	8p23.1	NR	rs17150793-C	NR	4E-9		0.03	[0.02-0.04] unit increase	Affymetrix [9000000] (imputed)	N
659	chr8	9784033	9784034	rs17150796	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	8p23.1	NR	rs17150796-T	NR	2E-17		0.0323	[0.025-0.04] unit increase	Affymetrix [9000000] (imputed)	N
659	chr8	9789548	9789549	rs11786541	25117820	Schneider BP	2014-08-12	Br J Cancer	Genetic variant predicts bevacizumab-induced hypertension in ECOG-5103 and ECOG-2100.	Response to chemotherapy in breast cancer hypertensive cases (cumulative dose) (bevacizumab)	255 European ancestry cases, 387 European ancestry controls		8p23.1	intergenic	rs11786541-?	NR	2E-6		1.65	[NR]	Illumina [up to 810372] (imputed)	N
659	chr8	9789692	9789693	rs13282752	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8p23.1	snoU13	rs13282752-G	NR	2E-9		0.0182096	[0.012-0.024] unit increase	Affymetrix [321114] (imputed)	N
659	chr8	9789692	9789693	rs13282752	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	8p23.1	snoU13	rs13282752-G	NR	3E-8		0.0168099	[0.011-0.023] unit increase	Affymetrix [321169] (imputed)	N
659	chr8	9792661	9792662	rs2055729	23502783	Weinhold N	2013-03-17	Nat Genet	The CCND1 c.870G>A polymorphism is a risk factor for t(11;14)(q13;q32) multiple myeloma.	Multiple myeloma (hyperdiploidy)	up to 1,660 European ancestry cases, 7,306 European ancestry controls		8p23.1	NR	rs2055729-G	0.33	8E-7	(HD vs. controls)	1.3	[1.17-1.45]	Illumina [414804]	N
659	chr8	9793600	9793601	rs483916	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta minimum area	35,110 individuals	NA	8p23.1		rs483916-A	0.478959	2E-9		0.0393903	[0.026-0.053] increase	Affymetrix [NR]	N
659	chr8	9793600	9793601	rs483916	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Pulse pressure x alcohol consumption interaction (2df test)	91,099 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	238,053 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,447 Hispanic ancestry drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic ancestry non-drinkers	8p23.1	MIR124-1	rs483916-A	0.47	7E-17	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
659	chr8	9796320	9796321	rs615632	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of monounsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	8p23.1		rs615632-C	0.467973	5E-16		0.0322512	[0.024-0.04] unit decrease	NR [11722792] (imputed)	N
659	chr8	9796320	9796321	rs615632	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	8p23.1		rs615632-C	0.46799	6E-14		0.0310084	[0.023-0.039] unit decrease	NR [11722792] (imputed)	N
659	chr8	9796320	9796321	rs615632	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	8p23.1		rs615632-C	0.467971	3E-14		0.0301371	[0.022-0.038] unit increase	NR [11722792] (imputed)	N
659	chr8	9796320	9796321	rs615632	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fish- and plant-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	8p23.1	PRAG1, MFHAS1, ERI1, MSRA, RP1L1, C8orf74, SOX7, PINX1, XKR6, MTMR9, SLC35G5, C8orf12, FAM167A, BLK, GATA4, DEFB136, DEFB135, DEFB134, DEFB130	rs615632-?	NR	8E-10	(female)	0.0204434	[0.014-0.027] unit increase	Affymetrix [25921788] (imputed)	N
659	chr8	9796320	9796321	rs615632	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	8p23.1	NR	rs615632-T	0.542305889708364	6E-21		0.017517187	[0.014-0.021] unit increase	NR [NR]	N
659	chr8	9796320	9796321	rs615632	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	8p23.1	intergenic	rs615632-T	0.52895	3E-21		9.469	z score increase	Illumina [18485882] (imputed)	N
659	chr8	9796629	9796630	rs499005	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	snoU13	rs499005-G	NR	1E-8		0.0223197	[0.015-0.03] unit decrease	Affymetrix [127266] (imputed)	N
659	chr8	9800913	9800914	rs10094779	30894546	Ivarsdottir EV	2019-03-20	Nat Commun	Sequence variation at ANAPC1 accounts for 24% of the variability in corneal endothelial cell density.	Corneal endothelial cell size variation coefficient	6,125 Icelandic ancestry individuals	NA	8p23.1	NR	rs10094779-G	0.241	8E-12		0.151	[0.11-0.19] unit increase	Illumina [NR]	N
659	chr8	9801242	9801243	rs10095135	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	8p23.1	NR	rs10095135-T	0.261852	1E-11		0.0522324	[0.037-0.067] unit increase	Affymetrix [17914406] (imputed)	N
659	chr8	9801242	9801243	rs10095135	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	ENSG00000238496	rs10095135-A	NR	2E-13		0.012821	[0.0094-0.0162] unit decrease	Affymetrix [18485882] (imputed)	N
659	chr8	9803711	9803712	rs13271489	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	8p23.1	MIR124-1, MSRA	rs13271489-?	NR	9E-18				Affymetrix, Illumina [18800000] (imputed)	N
659	chr8	9803711	9803712	rs13271489	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	8p23.1	MIR124-1, MSRA	rs13271489-?	NR	5E-21	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
659	chr8	9803711	9803712	rs13271489	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	8p23.1	MIR124-1, MSRA	rs13271489-?	NR	9E-20				Affymetrix, Illumina [18800000] (imputed)	N
659	chr8	9803711	9803712	rs13271489	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	8p23.1	MIR124-1, MSRA	rs13271489-?		5E-23	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
659	chr8	9803711	9803712	rs13271489	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	8p23.1	MIR124-1, MSRA	rs13271489-?	NR	9E-10				Affymetrix, Illumina [18800000] (imputed)	N
659	chr8	9803711	9803712	rs13271489	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	8p23.1	MIR124-1, MSRA	rs13271489-?	NR	1E-12	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
659	chr8	9803711	9803712	rs13271489	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	8p23.1	MIR124-1, MSRA	rs13271489-?	NR	9E-14	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
659	chr8	9803711	9803712	rs13271489	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	8p23.1	MIR124-1, MSRA	rs13271489-?	NR	1E-10				Affymetrix, Illumina [18800000] (imputed)	N
659	chr8	9804291	9804292	rs9650622	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	8p23.1	snoU13	rs9650622-G	NR	3E-12		0.0217734	[0.016-0.028] unit decrease	Affymetrix [323858] (imputed)	N
659	chr8	9804291	9804292	rs9650622	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fish- and plant-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	8p23.1	PRAG1, CLDN23, MFHAS1, ERI1, PPP1R3B, TNKS, MSRA, RP1L1, C8orf74, SOX7, PINX1, XKR6, MTMR9, SLC35G5, FAM167A, BLK, GATA4, C8orf49, FDFT1, CTSB, DEFB136, DEFB135, DEFB134, DEFB130	rs9650622-?	NR	7E-15		0.0190258	[0.014-0.024] unit increase	Affymetrix [25921788] (imputed)	N
659	chr8	9804291	9804292	rs9650622	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption interaction (2df test)	63,607 European ancestry drinkers, 10,193 African American or Afro-Caribbean drinkers, 2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,492 European ancestry non-drinkers, 11,223 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,058 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	8p23.1	LOC105379235, MIR124-1	rs9650622-T	0.53	4E-13	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
659	chr8	9806491	9806492	rs1126091	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	8p23.1	snoU13	rs1126091-T	NR	1E-10		0.0183547	[0.013-0.024] unit decrease	Affymetrix [321169] (imputed)	N
659	chr8	9806603	9806604	rs682400	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	ENSG00000238496	rs682400-A	NR	2E-10		0.010964	[0.0076-0.0143] unit increase	Affymetrix [18485882] (imputed)	N
659	chr8	9806823	9806824	rs1126089	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	snoU13	rs1126089-C	NR	4E-14		0.0234947	[0.017-0.03] unit decrease	Affymetrix [321114] (imputed)	N
659	chr8	9808335	9808336	rs654132	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8p23.1	snoU13	rs654132-C	NR	3E-8		0.0179267	[0.012-0.024] unit decrease	Affymetrix [321114] (imputed)	N
659	chr8	9808815	9808815	rs112741189	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	snoU13	rs112741189-A	NR	2E-8		0.0185058	[0.012-0.025] unit decrease	Affymetrix [127266] (imputed)	N
659	chr8	9809041	9809042	rs35408848	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	snoU13	rs35408848-A	NR	3E-8		0.0225611	[0.015-0.031] unit decrease	Affymetrix [321114] (imputed)	N
659	chr8	9809041	9809042	rs35408848	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	ENSG00000238496	rs35408848-G	NR	2E-12		0.012058	[0.0087-0.0154] unit decrease	Affymetrix [18485882] (imputed)	N
659	chr8	9809721	9809722	rs587328	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	snoU13	rs587328-C	NR	4E-9		0.0194623	[0.013-0.026] unit decrease	Affymetrix [321114] (imputed)	N
659	chr8	9811764	9811765	rs477860	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Neuroticism	274,107 British ancestry individuals	NA	8p23.1	NR	rs477860-T	0.2968	6E-14		0.01439	[0.011-0.018] unit decrease	NR [8968716] (imputed)	N
659	chr8	9813316	9813317	rs671370	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	ENSG00000238496	rs671370-T	NR	2E-12		0.01238	[0.0089-0.0158] unit increase	Affymetrix [18485882] (imputed)	N
659	chr8	9814410	9814411	rs656319	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	8p23.1	snoU13	rs656319-A	NR	4E-8		0.0155783	[0.01-0.021] unit decrease	Affymetrix [321016] (imputed)	N
659	chr8	9814410	9814411	rs656319	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption (light vs heavy) interaction (2df test)	12,758 European ancestry heavy drinkers, 1,326 African American or Afro-Caribbean heavy drinkers, 648 Asian ancestry heavy drinkers, 364 Hispanic or Latin American heavy drinkers, 43,947 European ancestry light drinkers, 8,239 African American or Afro-Caribbean light drinkers, 1,141 Asian ancestry light drinkers, 4,448 Hispanic or Latin American light drinkers	42,078 European ancestry heavy drinkers, 217 African American heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic heavy drinkers, 74,706 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	8p23.1	LOC105379235, MIR124-1	rs656319-A	0.45	2E-12	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
659	chr8	9814410	9814411	rs656319	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption (light vs heavy) interaction (2df test)	56,705 European ancestry heavy and light drinkers, 9,725 African American or Afro-Caribbean heavy and light drinkers, 1,789 Asian ancestry heavy and light drinkers, 4,812 Hispanic or Latin American heavy and light drinkers	42,077 European ancestry heavy drinkers, 217 African American heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic ancestry heavy drinkers, 74,701 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	8p23.1	LOC105379235, MIR124-1	rs656319-A	0.45	8E-11	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
659	chr8	9814410	9814411	rs656319	23049088	Meng W	2012-10-09	Invest Ophthalmol Vis Sci	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		8p23.1	intergenic	rs656319-?	.549	3E-6			[NR]	Affymetrix, Illumina [152234]	N
659	chr8	9828907	9828908	rs117063744	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	ENSG00000238496	rs117063744-C	NR	4E-8		0.0093228	[0.006-0.0126] unit increase	Affymetrix [18485882] (imputed)	N
659	chr8	9828938	9828939	rs570903	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	snoU13	rs570903-G	NR	2E-8		0.0183521	[0.012-0.025] unit decrease	Affymetrix [323858] (imputed)	N
659	chr8	9828938	9828939	rs570903	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	snoU13	rs570903-G	NR	2E-9		0.0194133	[0.013-0.026] unit decrease	Affymetrix [127266] (imputed)	N
660	chr8	9834226	9834227	rs117108381	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 164)	19,670 European ancestry individuals	NA	8p23.1		rs117108381-?	NR	5E-8				NR [9705931] (imputed)	N
660	chr8	9834861	9834862	rs7813389	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	8p23.1	NR	rs7813389-T	0.399739061651458	5E-9		0.010964644	[0.0073-0.0146] unit decrease	NR [NR]	N
660	chr8	9843953	9843954	rs17737449	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting isoleucine	4,734 individuals	NA	8p23.1		rs17737449-C	0.104599239	7E-9		0.196242	[0.13-0.26] mmol/l decrease	Illumina [7701709] (imputed)	N
660	chr8	9843953	9843954	rs17737449	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	ENSG00000238496	rs17737449-T	NR	3E-8		0.0094373	[0.0061-0.0128] unit decrease	Affymetrix [18485882] (imputed)	N
660	chr8	9845865	9845866	rs75921243	29317604	Liu D	2018-01-10	Transl Psychiatry	Beta-defensin 1, aryl hydrocarbon receptor and plasma kynurenine in major depressive disorder: metabolomics-informed genomics.	Plasma kynurenine to tryptophan ratio in major depressive disorder	290 European ancestry individuals	NA	8p23.1	MSRA	rs75921243-G	0.02	6E-8		1.51	[NR] unit decrease	Illumina [~ 7500000] (imputed)	N
660	chr8	9851137	9851138	rs13276420	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	ENSG00000260093	rs13276420-G	NR	5E-8		0.0094754	[0.0061-0.0129] unit increase	Affymetrix [18485882] (imputed)	N
660	chr8	9856357	9856358	rs80101730	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	8p23.1	NR	rs80101730-C	NR	6E-11		0.0467	[0.033-0.061] unit increase	Affymetrix [9000000] (imputed)	N
660	chr8	9859912	9859913	rs62491176	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	8p23.1	MSRA	rs62491176-T	0.859394	1E-12		0.0194863	[0.014-0.025] unit decrease	Affymetrix [NR] (imputed)	N
660	chr8	9860079	9860080	rs545854	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	8p23.1	NR	rs545854-C	NR	2E-25		0.0333	[0.027-0.04] unit decrease	Affymetrix [9000000] (imputed)	N
660	chr8	9864979	9864980	rs35044612	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8p23.1	RP11-1E4.1	rs35044612-T	NR	2E-8		0.0161808	[0.011-0.022] unit decrease	Affymetrix [321114] (imputed)	N
660	chr8	9872809	9872810	rs13250399	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8p23.1	RP11-1E4.1	rs13250399-T	NR	1E-8		0.0164742	[0.011-0.022] unit increase	Affymetrix [321114] (imputed)	N
660	chr8	9875907	9875908	rs35228837	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	ENSG00000260093	rs35228837-C	NR	3E-9		0.010226	[0.0068-0.0136] unit increase	Affymetrix [18485882] (imputed)	N
660	chr8	9877304	9877305	rs11249967	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	RP11-1E4.1	rs11249967-T	NR	1E-8		0.0202898	[0.013-0.027] unit decrease	Affymetrix [127266] (imputed)	N
660	chr8	9881008	9881009	rs17150950	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Schizophrenia (MTAG)	940,613 European ancestry individuals	NA			rs17150950-?	NR	5E-8				NR [2625067]	N
660	chr8	9881135	9881136	rs7013693	34002096	Mullins N	2021-05-17	Nat Genet	Genome-wide association study of more than 40,000 bipolar disorder cases provides new insights into the underlying biology.	Bipolar I disorder	25,060 European ancestry cases, 449,978 European ancestry controls	NA	8p23.1	NR	rs7013693-G	0.83	3E-8		0.9209	[0.89-0.95]	Affymetrix, Illumina [7549318] (imputed)	N
660	chr8	9882574	9882575	rs657913	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 18)	3,566 European ancestry individuals	4,680 European ancestry individuals	8p23.1		rs657913-G	0.440969287	4E-10				Illumina [7417619] (imputed)	N
660	chr8	9886641	9886642	rs12545623	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	ENSG00000260093	rs12545623-A	NR	4E-11		0.011603	[0.0082-0.015] unit increase	Affymetrix [18485882] (imputed)	N
660	chr8	9888972	9888973	rs657086	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	ENSG00000260093	rs657086-C	NR	3E-14		0.013315	[0.0099-0.0167] unit increase	Affymetrix [18485882] (imputed)	N
660	chr8	9890303	9890304	rs4598253	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8p23.1	RP11-1E4.1	rs4598253-A	NR	3E-12		0.0199288	[0.014-0.026] unit decrease	Affymetrix [321114] (imputed)	N
660	chr8	9891253	9891254	rs643955	26606652	Alarcon-Riquelme ME	2015-11-25	Arthritis Rheumatol	Genome-Wide Association Study in an Amerindian Ancestry Population Reveals Novel Systemic Lupus Erythematosus Risk Loci and the Role of European Admixture.	Systemic lupus erythematosus	862 Native American ancestry-enriched North American cases, 531 Native American ancestry-enriched South American cases, 1,973 Native American ancestry-enriched North American controls, 344 Native American ancestry-enriched South American controls	NA	8p23.1	intergenic	rs643955-T	0.748	4E-7		1.49	[1.28-1.73]	Illumina [580483] (imputed)	N
660	chr8	9892176	9892177	rs658385	27089180	Day FR	2016-04-18	Nat Genet	Physical and neurobehavioral determinants of reproductive onset and success.	Age at first sexual intercourse	59,357 British ancestry males, 66,310 British ancestry females	NA	8p23.1	MSRA	rs658385-T	0.55416	7E-9		0.0223478	[0.015-0.03] unit increase	Affymetrix [641018] (imputed)	N
660	chr8	9892528	9892529	rs670044	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	8p23.1		rs670044-A	0.335196	7E-15		0.0322346	[0.024-0.04] unit decrease	NR [11722792] (imputed)	N
660	chr8	9892528	9892529	rs670044	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	8p23.1	RP11-1E4.1	rs670044-A	NR	3E-10		0.0189631	[0.013-0.025] unit decrease	Affymetrix [321169] (imputed)	N
660	chr8	9910638	9910639	rs73189192	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	ENSG00000260093	rs73189192-C	NR	5E-9		0.010153	[0.0067-0.0136] unit increase	Affymetrix [18485882] (imputed)	N
660	chr8	9917861	9917862	rs6982375	31358989	Gelernter J	2019-07-29	Nat Neurosci	Genome-wide association study of post-traumatic stress disorder reexperiencing symptoms in >165,000 US veterans.	Post-traumatic stress disorder (re-experiencing symptoms)	146,660 European ancestry individuals, 19,983 African American individuals	117,900 European ancestry individuals	8p23.1	NR	rs6982375-?	NR	7E-6	(AA)	0.290809	[NR] unit decrease	Affymetrix [49134253] (imputed)	N
660	chr8	9924287	9924288	rs759188048	30108283	Granot-Hershkovitz E	2018-08-14	Eur J Hum Genet	A study of Kibbutzim in Israel reveals risk factors for cardiometabolic traits and subtle population structure.	Weight	733 Ashkenazi Jewish ancestry individuals (founder/population isolate), 168 Sephardi Jewish, North African Jewish, Middle Eastern, Caucasian and Yemenite Jewish individuals	1,620 individuals	8p23.1	MSRA	rs759188048-A	NR	2E-10		11.225	[7.76-14.69] kg increase	Illumina [212505] (imputed)	N
660	chr8	9931620	9931621	rs187276360	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Joint mobility (Beighton score)	64,143 European ancestry individuals	NA	8p23.1	MSRA	rs187276360-?	NR	4E-7		5.025	[3.087-6.963] unit increase	Illumina [12039492] (imputed)	N
660	chr8	9942906	9942907	rs12545826	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	MSRA	rs12545826-G	NR	3E-10		0.010955	[0.0075-0.0144] unit decrease	Affymetrix [18485882] (imputed)	N
661	chr8	9974583	9974584	rs60384372	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	8p23.1	NR	rs60384372-G	0.4504	4E-17		0.0352	[0.027-0.043] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
661	chr8	9974583	9974584	rs60384372	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	MSRA	rs60384372-A	NR	5E-9		0.010197	[0.0068-0.0136] unit increase	Affymetrix [18485882] (imputed)	N
661	chr8	9974823	9974824	rs17689007	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	8p23.1	MSRA	rs17689007-G	0.5329	3E-9		1.04	[1.03-1.05]	Affymetrix, Illumina [~ 27000000] (imputed)	N
661	chr8	9976539	9976540	rs7843924	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	8p23.1	MSRA	rs7843924-C	0.549006	8E-21		0.00367643	[0.0029-0.0044] unit decrease	Affymetrix [13995440] (imputed)	N
661	chr8	9978321	9978322	rs57105322	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	8p23.1		rs57105322-?	NR	6E-8				NR [~ 8900000] (imputed)	N
661	chr8	9979384	9979385	rs13264586	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	8p23.1	CDC25A, ZNF589, NME6, SPINK8, FBXW12, PLXNB1, CCDC51, TMA7, ATRIP, TREX1, SHISA5, PFKFB4, UCN2, COL7A1, UQCRC1, TMEM89, SLC26A6, CELSR3, NCKIPSD, IP6K2, PRKAR2A, SLC25A20, ARIH2OS, ARIH2, P4HTM, WDR6, DALRD3, NDUFAF3, IMPDH2, QRICH1, QARS, USP19, LAMB2, CCDC71, KLHDC8B, C3orf84, CCDC36, RP11-3B7.1, C3orf62, USP4, GPX1, RHOA, TCTA, AMT, NICN1, DAG1, BSN, APEH, MST1, RNF123, AMIGO3, GMPPB, IP6K1, CDHR4, FAM212A, UBA7, TRAIP, CAMKV, MST1R, CTD-2330K9.3, MON1A, RBM6, RBM5, SEMA3F, GNAT1, GNAI2, LSMEM2, IFRD2, HYAL2, TUSC2, RASSF1, ZMYND10, NPRL2, CYB561D2, XXcos-LUCA11.5, TMEM115, CACNA2D2, CISH, MAPKAPK3, DOCK3	rs13264586-?		1E-16				NR [7428630] (imputed)	N
661	chr8	9979534	9979535	rs13256357	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	8p23.1	MSRA	rs13256357-C	0.798517	6E-15		0.0136671	[0.01-0.017] unit decrease	Affymetrix [12370749]	N
661	chr8	9979991	9979992	rs2062331	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption interaction (2df test)	63,607 European ancestry drinkers, 10,193 African American or Afro-Caribbean drinkers, 2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,492 European ancestry non-drinkers, 11,223 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,058 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	8p23.1	MSRA	rs2062331-A	0.54	5E-15	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
661	chr8	9983077	9983078	rs6985791	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	MSRA	rs6985791-A	NR	9E-9		0.0220444	[0.015-0.03] unit decrease	Affymetrix [321114] (imputed)	N
661	chr8	9983725	9983726	rs17151149	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	8p23.1	NR	rs17151149-T	NR	2E-11		0.0507	[0.036-0.065] unit increase	Affymetrix [9000000] (imputed)	N
661	chr8	9984776	9984777	rs1351876	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	MSRA	rs1351876-A	NR	4E-8		0.0170311	[0.011-0.023] unit decrease	Affymetrix [321114] (imputed)	N
661	chr8	9985907	9985908	rs12545775	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8p23.1	MSRA	rs12545775-G	NR	4E-8		0.0191344	[0.012-0.026] unit decrease	Affymetrix [321114] (imputed)	N
661	chr8	9986654	9986655	rs1484642	22688191	Bergen SE	2012-06-12	Mol Psychiatry	Genome-wide association study in a Swedish population yields support for greater CNV and MHC involvement in schizophrenia compared with bipolar disorder.	Bipolar disorder and schizophrenia	2,111 European ancestry schizophrenia cases, 836 European ancestry bipolar disorder cases, 2,535 European ancestry controls	NA	8p23.1	MSRA	rs1484642-C	NR	3E-6		1.43	[NR]	Affymetrix [745006]	N
661	chr8	9996388	9996389	rs34990153	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	8p23.1	NR	rs34990153-G	0.439	2E-16		0.0384	[0.029-0.048] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
661	chr8	10004953	10004954	rs10090114	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	799 African American cases, 14,353 African American controls	NA	8p23.1	NR	rs10090114-?	NR	7E-7		0.331	[0.2-0.46] unit increase	Affymetrix, Illumina [12923718] (imputed)	N
661	chr8	10005882	10005883	rs58764043	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	8p23.1	Intergenic	rs58764043-T	0.2034	4E-10	(MTAG)	0.0139	[0.0096-0.0182] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
661	chr8	10006863	10006864	rs4841286	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	MSRA	rs4841286-C	NR	3E-8		0.0190894	[0.012-0.026] unit decrease	Affymetrix [321114] (imputed)	N
661	chr8	10009948	10009949	rs11986122	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	8p23.1		rs11986122-C	0.577225	9E-16		0.0319333	[0.024-0.04] unit increase	NR [11722792] (imputed)	N
661	chr8	10009948	10009949	rs11986122	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	8p23.1		rs11986122-C	0.577315	2E-12		0.0287429	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
661	chr8	10009948	10009949	rs11986122	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	8p23.1		rs11986122-C	0.577225	1E-16		0.032725	[0.025-0.04] unit decrease	NR [11722792] (imputed)	N
661	chr8	10009948	10009949	rs11986122	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	8p23.1		rs11986122-C	0.577225	2E-16		0.0324613	[0.025-0.04] unit decrease	NR [11722792] (imputed)	N
661	chr8	10009948	10009949	rs11986122	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	MSRA	rs11986122-G	NR	2E-11		0.0212704	[0.015-0.028] unit decrease	Affymetrix [323858] (imputed)	N
661	chr8	10009948	10009949	rs11986122	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	MSRA	rs11986122-G	NR	2E-12		0.0224451	[0.016-0.029] unit decrease	Affymetrix [127266] (imputed)	N
661	chr8	10009948	10009949	rs11986122	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	8p23.1	NR	rs11986122-G	0.422632	1E-8		0.0378406	[0.024-0.051] unit increase	Affymetrix [17914406] (imputed)	N
661	chr8	10009951	10009952	rs11993089	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Pork consumption	335,576 European ancestry individuals	NA	8p23.1	TNKS, MSRA	rs11993089-?	NR	4E-9		0.00353633	[-0.00137-0.00845] unit increase	Affymetrix [25921788] (imputed)	N
661	chr8	10009951	10009952	rs11993089	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Oily fish consumption	335,576 European ancestry individuals	NA	8p23.1	TNKS, MSRA	rs11993089-?	NR	4E-9		0.0146851	[0.0098-0.0196] unit decrease	Affymetrix [25921788] (imputed)	N
661	chr8	10009951	10009952	rs11993089	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Pulse pressure x alcohol consumption interaction (2df test)	91,099 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	238,053 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,447 Hispanic ancestry drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic ancestry non-drinkers	8p23.1	MSRA	rs11993089-T	0.42	6E-23	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
661	chr8	10012231	10012232	rs62488738	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	MSRA	rs62488738-G	NR	9E-9		0.0195155	[0.013-0.026] unit decrease	Affymetrix [323858] (imputed)	N
661	chr8	10012231	10012232	rs62488738	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	MSRA	rs62488738-G	NR	2E-9		0.0203265	[0.014-0.027] unit decrease	Affymetrix [127266] (imputed)	N
661	chr8	10018153	10018154	rs1976071	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	MSRA	rs1976071-G	NR	3E-9		0.0188312	[0.013-0.025] unit increase	Affymetrix [323858] (imputed)	N
661	chr8	10018153	10018154	rs1976071	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	MSRA	rs1976071-G	NR	4E-10		0.0198498	[0.014-0.026] unit increase	Affymetrix [127266] (imputed)	N
661	chr8	10018153	10018154	rs1976071	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	MSRA	rs1976071-G	NR	5E-10		0.0195695	[0.013-0.026] unit increase	Affymetrix [321114] (imputed)	N
661	chr8	10018153	10018154	rs1976071	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	8p23.1	MSRA	rs1976071-G	NR	8E-9		0.0181624	[0.012-0.024] unit increase	Affymetrix [323858] (imputed)	N
661	chr8	10018153	10018154	rs1976071	30894546	Ivarsdottir EV	2019-03-20	Nat Commun	Sequence variation at ANAPC1 accounts for 24% of the variability in corneal endothelial cell density.	Corneal endothelial cell size variation coefficient	6,125 Icelandic ancestry individuals	NA	8p23.1	NR	rs1976071-G		2E-7		0.1	[NR] unit decrease	Illumina [NR]	N
661	chr8	10022937	10022938	rs7017212	21679298	Ma X	2011-06-16	Genes Brain Behav	A genome-wide association study for quantitative traits in schizophrenia in China.	Schizophrenia	98 Chinese ancestry cases, 60 Chinese ancestry controls	NA	8p23.1	MSRA	rs7017212-?	.41	4E-6				Illumina [464301]	N
661	chr8	10029548	10029549	rs74822012	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	8p23.1	MSRA	rs74822012-G	0.0669099043683041	2E-6	(G_unclassified_F_Lachnospiraceae_RNT)	0.209198	[0.12-0.3] unit decrease	Illumina [7711310] (imputed)	N
661	chr8	10031931	10031932	rs75785055	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (90 or 130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	8p23.1	MSRA	rs75785055-?	NR	2E-6		0.211	[0.11-0.32] unit increase	Illumina [at least 13000000] (imputed)	N
661	chr8	10032893	10032894	rs11993663	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs autism spectrum disorder (ordinary least squares (OLS))	40,675 schizophrenia cases, 18,381 autism spectrum disorder cases	NA	8p23.1		rs11993663-?	NR	1E-9		0.0183	NR unit increase	NR [4484088] (imputed)	N
661	chr8	10033424	10033425	rs73191547	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	8p23.1	MSRA	rs73191547-?	NR	3E-8		0.01215576	[0.0079-0.0165] unit increase	NR [7306098]	N
661	chr8	10033424	10033425	rs73191547	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	8p23.1	MSRA	rs73191547-T	NR	6E-9	(EA)	1.0695187	[1.05-1.09]	Illumina [6627481] (imputed)	N
661	chr8	10033424	10033425	rs73191547	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	8p23.1	LINC00599, MIR124-1, MIR597, MSRA, TNKS	rs73191547-T	NR	4E-8		1.0638298	[NR]	Illumina [7158791] (imputed)	N
661	chr8	10043989	10043990	rs117733692	30657218	Park SY	2019-01-18	Clin Exp Allergy	Longitudinal analysis to better characterize Asthma-COPD Overlap Syndrome (ACOS): Findings from an adult asthma cohort in Korea (COREA).	Asthma-chronic obstructive  pulmonary disease overlap syndrome	228 Korean ancestry cases, 5,915 Korean ancestry controls	NA	8p23.1	MSRA	rs117733692-?	NR	1E-6		3.332		Korean Chip	N
661	chr8	10060682	10060683	rs17151318	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	8p23.1		rs17151318-?	NR	2E-17		0.0179328	[0.014-0.022] unit decrease	Affymetrix [20259828] (imputed)	N
661	chr8	10062351	10062352	rs112032253	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	8p23.1	MSRA	rs112032253-?	NR	8E-6		0.213	[0.097-0.329] unit increase	Illumina [at least 13000000] (imputed)	N
661	chr8	10064789	10064790	rs7844551	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	8p23.1	NR	rs7844551-A	NR	4E-13		0.0201	[0.015-0.026] unit increase	Affymetrix [9000000] (imputed)	N
661	chr8	10068072	10068073	rs17749155	27527254	Gharahkhani P	2016-08-12	Lancet Oncol	Genome-wide association studies in oesophageal adenocarcinoma and Barrett's oesophagus: a large-scale meta-analysis.	Barrett's esophagus  or Esophageal adenocarcinoma	6,167 European ancestry Barrett's oesophagus cases, 4,112 European ancestry esophageal adenocarcinoma cases, 17,159 European ancestry controls	NA	8p23.1	MSRA	rs17749155-A		5E-10		1.18	[1.12-1.24]	Illumina [11951684] (imputed)	N
661	chr8	10068072	10068073	rs17749155	27527254	Gharahkhani P	2016-08-12	Lancet Oncol	Genome-wide association studies in oesophageal adenocarcinoma and Barrett's oesophagus: a large-scale meta-analysis.	Barrett's esophagus	6,167 European ancestry cases, 17,159 European ancestry controls	NA	8p23.1	MSRA	rs17749155-A		2E-9		1.2039	[1.14-1.26]	Illumina [11942825] (imputed)	N
661	chr8	10070611	10070612	rs117301188	33654129	Jung HU	2021-03-02	Sci Rep	Identification of genetic loci affecting body mass index through interaction with multiple environmental factors using structured linear mixed model.	BMI x  environmental factors (excluding physical activity) interaction	8,155 Korean ancestry individuals	NA	8p23.1	MSRA	rs117301188-?	NR	5E-6				Affymetrix [5908111] (imputed)	N
661	chr8	10071619	10071620	rs11775334	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	MSRA	rs11775334-A	NR	2E-8		0.0098213	[0.0064-0.0133] unit increase	Affymetrix [18485882] (imputed)	N
661	chr8	10071619	10071620	rs11775334	19430479	Levy D	2009-05-10	Nat Genet	Genome-wide association study of blood pressure and hypertension.	Hypertension	29,136 European ancestry individuals	34,433 European ancestry individuals	8p23.1	MSRA	rs11775334-A	0.32	4E-6		0.08	[0.04-0.12] log odds increase	Affymetrix, Illumina [2533153] (imputed)	N
661	chr8	10074213	10074214	rs28465315	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	8p23.1	NR	rs28465315-A	0.166	1E-6	(IFNgamma_CXCL9_of_Monocytes)			Illumina [5084123] (imputed)	N
661	chr8	10077240	10077241	rs7017349	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	MSRA	rs7017349-G	NR	5E-9		0.0182559	[0.012-0.024] unit increase	Affymetrix [321114] (imputed)	N
661	chr8	10086410	10086411	rs6999631	23568457	Wade TD	2013-04-09	Int J Eat Disord	Genetic variants associated with disordered eating.	Bulimia nervosa	151 European ancestry female cases, 2,291 European ancestry female controls	NA	8p23.1	MSRA	rs6999631-C	0.965	8E-6		0.09	[0.051-0.129] unit decrease	Illumina [6150213] (imputed)	N
661	chr8	10090096	10090097	rs2975734	26835600	Hu Y	2016-02-02	Nat Commun	GWAS of 89,283 individuals identifies genetic variants associated with self-reporting of being a morning person.	Morning vs. evening chronotype	38,937 European ancestry morning chronotype individuals, 50,346 European ancestry evening chronotype individuals	NA	8p23.1	NR	rs2975734-?	NR	4E-7				Illumina [7427422] (imputed)	N
661	chr8	10090096	10090097	rs2975734	26835600	Hu Y	2016-02-02	Nat Commun	GWAS of 89,283 individuals identifies genetic variants associated with self-reporting of being a morning person.	Chronotype	38,937 European ancestry morning individuals, 50,346 European ancestry evening individuals, at least 32,842 European ancestry neutral individuals	NA	8p23.1	MSRA	rs2975734-G	0.4331	2E-9		0.023	[0.015-0.03] unit increase	Illumina [7427422] (imputed)	N
662	chr8	10099503	10099504	rs34919878	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption interaction (2df test)	63,607 European ancestry drinkers, 10,193 African American or Afro-Caribbean drinkers, 2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,492 European ancestry non-drinkers, 11,223 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,058 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	8p23.1	MSRA	rs34919878-A	0.4191	2E-15	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
662	chr8	10099503	10099504	rs34919878	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption interaction (2df test)	63,607 European ancestry drinkers, 10,193 African American or Afro-Caribbean drinkers, 2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,492 European ancestry non-drinkers, 11,223 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,058 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	8p23.1	MSRA	rs34919878-A	0.41	6E-17	(EA, Hispanic)			Affymetrix, Illumina [up to 39321347] (imputed)	N
662	chr8	10100069	10100070	rs55836143	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	MSRA	rs55836143-T	NR	2E-8		0.0175627	[0.011-0.024] unit increase	Affymetrix [323858] (imputed)	N
662	chr8	10100069	10100070	rs55836143	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	MSRA	rs55836143-T	NR	3E-9		0.0186445	[0.012-0.025] unit increase	Affymetrix [127266] (imputed)	N
662	chr8	10100069	10100070	rs55836143	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8p23.1	MSRA	rs55836143-T	NR	2E-8		0.0160618	[0.01-0.022] unit increase	Affymetrix [321114] (imputed)	N
662	chr8	10105067	10105068	rs4841294	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption (light vs heavy) interaction (2df test)	12,758 European ancestry heavy drinkers, 1,326 African American or Afro-Caribbean heavy drinkers, 648 Asian ancestry heavy drinkers, 364 Hispanic or Latin American heavy drinkers, 43,947 European ancestry light drinkers, 8,239 African American or Afro-Caribbean light drinkers, 1,141 Asian ancestry light drinkers, 4,448 Hispanic or Latin American light drinkers	42,078 European ancestry heavy drinkers, 217 African American heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic heavy drinkers, 74,706 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	8p23.1	MSRA	rs4841294-A	0.43	3E-10	(AA, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
662	chr8	10105660	10105661	rs4563888	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	8p23.1	NR	rs4563888-A	NR	1E-19		0.0255	[0.02-0.031] unit increase	Affymetrix [9000000] (imputed)	N
662	chr8	10105660	10105661	rs4563888	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	8p23.1	NR	rs4563888-A	NR	4E-10		0.0177	[0.012-0.023] unit increase	Affymetrix [9000000] (imputed)	N
662	chr8	10105660	10105661	rs4563888	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	8p23.1	NR	rs4563888-A	NR	5E-9		0.0165	[0.011-0.022] unit increase	Affymetrix [9000000] (imputed)	N
662	chr8	10106009	10106010	rs17693945	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption (light vs heavy) interaction (2df test)	56,705 European ancestry heavy and light drinkers, 9,725 African American or Afro-Caribbean heavy and light drinkers, 1,789 Asian ancestry heavy and light drinkers, 4,812 Hispanic or Latin American heavy and light drinkers	42,077 European ancestry heavy drinkers, 217 African American heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic ancestry heavy drinkers, 74,701 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	8p23.1	MSRA	rs17693945-T	0.4196	4E-9	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
662	chr8	10106009	10106010	rs17693945	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption (light vs heavy) interaction (2df test)	56,705 European ancestry heavy and light drinkers, 9,725 African American or Afro-Caribbean heavy and light drinkers, 1,789 Asian ancestry heavy and light drinkers, 4,812 Hispanic or Latin American heavy and light drinkers	42,077 European ancestry heavy drinkers, 217 African American heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic ancestry heavy drinkers, 74,701 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	8p23.1	MSRA	rs17693945-T	0.41	2E-9	(AA, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
662	chr8	10113506	10113507	rs11782517	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Nose size	67,023 European ancestry individuals	NA	8p23.1	MSRA	rs11782517-?	NR	4E-7		0.024	[0.015-0.034] unit increase	Illumina [12039491] (imputed)	N
662	chr8	10116729	10116730	rs17751178	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	8p23.1		rs17751178-C	0.569933	6E-14		0.0304137	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
662	chr8	10116729	10116730	rs17751178	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	8p23.1		rs17751178-C	0.570081	1E-12		0.0283821	[0.021-0.036] unit increase	NR [11722792] (imputed)	N
662	chr8	10117410	10117411	rs11776973	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	MSRA	rs11776973-C	NR	1E-11		0.011851	[0.0084-0.0153] unit increase	Affymetrix [18485882] (imputed)	N
662	chr8	10118301	10118302	rs35886862	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	8p23.1	NR	rs35886862-T	NR	3E-14		0.0204	[0.015-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
662	chr8	10121634	10121635	rs7823072	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	MSRA	rs7823072-A	NR	1E-10		0.011196	[0.0078-0.0146] unit decrease	Affymetrix [18485882] (imputed)	N
662	chr8	10128682	10128683	rs6601426	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	8p23.1	NR	rs6601426-G	0.840613651367115	7E-12		0.008606554	[0.0061-0.0111] unit decrease	NR [NR]	N
662	chr8	10129756	10129757	rs4240637	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	MSRA	rs4240637-A	NR	3E-9		0.010347	[0.0069-0.0138] unit decrease	Affymetrix [18485882] (imputed)	N
662	chr8	10129756	10129757	rs4240637	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	8p23.1	NR	rs4240637-A	NR	2E-10		6.397	z score increase	Affymetrix [10847151] (imputed)	N
662	chr8	10132113	10132114	rs2952166	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	8p23.1	NR	rs2952166-C	NR	3E-14		0.0275	[0.02-0.035] unit increase	Affymetrix [9000000] (imputed)	N
662	chr8	10133708	10133709	rs17151565	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	8p23.1		rs17151565-?	NR	2E-8				NR [~ 8900000] (imputed)	N
662	chr8	10133708	10133709	rs17151565	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	8p23.1	NR	rs17151565-C	NR	1E-9		6.049	z score increase	Affymetrix [10847151] (imputed)	N
662	chr8	10133708	10133709	rs17151565	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Irritable mood	366,726 European ancestry individuals	NA	8p23.1	MSRA	rs17151565-C	0.389268	8E-9		5.78	z score increase	NR [~ 10847151] (imputed)	N
662	chr8	10135975	10135976	rs2975648	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	8p23.1		rs2975648-T	0.567492	2E-16		0.0332641	[0.025-0.041] unit increase	NR [11722792] (imputed)	N
662	chr8	10135975	10135976	rs2975648	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	8p23.1		rs2975648-T	0.567492	1E-13		0.0296304	[0.022-0.037] unit decrease	NR [11722792] (imputed)	N
662	chr8	10135975	10135976	rs2975648	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	8p23.1		rs2975648-T	0.567492	1E-12		0.0286509	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
662	chr8	10135975	10135976	rs2975648	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	8p23.1		rs2975648-T	0.567492	2E-14		0.0303862	[0.023-0.038] unit decrease	NR [11722792] (imputed)	N
662	chr8	10135975	10135976	rs2975648	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	8p23.1		rs2975648-T	0.567492	3E-14		0.0303455	[0.023-0.038] unit decrease	NR [11722792] (imputed)	N
662	chr8	10135975	10135976	rs2975648	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	8p23.1		rs2975648-T	0.567492	6E-16		0.0333602	[0.025-0.041] unit decrease	NR [11722792] (imputed)	N
662	chr8	10135975	10135976	rs2975648	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	8p23.1		rs2975648-T	0.567492	4E-17		0.0341534	[0.026-0.042] unit decrease	NR [11722792] (imputed)	N
662	chr8	10136046	10136047	rs34328494	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Depression	at least 5,919 European ancestry cases, at least 130,691 European ancestry controls	634,037 European ancestry cases, 1,308,690 European ancestry controls	8p23.1	MSRA	rs34328494-T	0.3082	1E-9		0.014841492	[0.0094-0.0203] unit increase	NR [9417325] (imputed)	N
662	chr8	10136046	10136047	rs34328494	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	MSRA	rs34328494-T	NR	2E-16		0.01427	[0.011-0.018] unit decrease	Affymetrix [18485882] (imputed)	N
662	chr8	10143163	10143164	rs2952251	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (family Streptococcaceae id.1850)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	8p23.1		rs2952251-A	NR	4E-7		5.082634	z score decrease	Affymetrix, Illumina [NR] (imputed)	N
662	chr8	10143163	10143164	rs2952251	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	8p23.1	NR	rs2952251-G	0.74437	4E-8	(Conditioned on chr8:10763655)	0.016412528	[0.011-0.022] unit increase	NR [~ 10000000] (imputed)	N
662	chr8	10145924	10145925	rs67455183	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	8p23.1		rs67455183-?	NR	2E-10		0.0248	unit decrease	NR [NR]	N
662	chr8	10147255	10147256	rs56220175	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8p23.1	MSRA	rs56220175-T	NR	1E-8		0.0220952	[0.015-0.03] unit increase	Affymetrix [321114] (imputed)	N
662	chr8	10151140	10151141	rs55743011	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	MSRA	rs55743011-C	NR	5E-9		0.010188	[0.0068-0.0136] unit increase	Affymetrix [18485882] (imputed)	N
662	chr8	10152598	10152599	rs4840475	33382417	Batai K	2020-12-31	J Nutr	Genome-Wide Association Study of Response to Selenium Supplementation and Circulating Selenium Concentrations in Adults of European Descent.	Response to selenium supplementation (change in plasma selenium concentration)	428 European ancestry individuals	NA	8p23.1	MSRA	rs4840475-?	0.312	9E-6		12.32	[6.95-17.69] unit increase	Illumina [7663546] (imputed)	N
662	chr8	10153081	10153082	rs17151637	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking initiation (ever regular vs never regular)	up to 433,216 European ancestry individuals	NA	8p23.1	MSRA	rs17151637-T	0.281	2E-9		0.0152	[0.01-0.02] unit decrease	Illumina [~ 250000] (imputed)	N
662	chr8	10153081	10153082	rs17151637	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	8p23.1	PRSS55	rs17151637-T	0.2839	2E-11		0.014881184	[0.011-0.019] unit decrease	Affymetrix [11514654] (imputed)	N
662	chr8	10153081	10153082	rs17151637	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	8p23.1	Intergenic	rs17151637-T	0.2763	8E-11	(MTAG)	0.013	[0.0091-0.0169] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
662	chr8	10156754	10156755	rs73193549	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	8p23.1	MSRA	rs73193549-G	NR	4E-9		0.0234889	[0.016-0.031] unit increase	Affymetrix [321169] (imputed)	N
662	chr8	10158415	10158416	rs34028848	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	MSRA	rs34028848-T	NR	2E-10		0.010923	[0.0075-0.0143] unit decrease	Affymetrix [18485882] (imputed)	N
662	chr8	10161087	10161088	rs79001489	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	8p23.1	Intergenic	rs79001489-A	0.1201	4E-9	(MTAG)	0.015	[0.01-0.02] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
662	chr8	10161087	10161088	rs79001489	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	8p23.1	Intergenic	rs79001489-A	0.1201	3E-8	(MTAG)	0.0111	[0.0072-0.015] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
662	chr8	10165194	10165195	rs11990063	29559929	Amare AT	2018-03-06	Front Psychiatry	Association of the Polygenic Scores for Personality Traits and Response to Selective Serotonin Reuptake Inhibitors in Patients with Major Depressive Disorder.	Remission after SSRI treatment in MDD or neuroticism	865 individuals with SSRI response data, 170,911 individuals with personality trait data	NA	8p23.1	MSRA	rs11990063-T	NR	9E-9				NR [NR] (imputed)	N
662	chr8	10166151	10166152	rs17151684	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Pork consumption	335,576 European ancestry individuals	NA	8p23.1	TNKS, MSRA	rs17151684-?	NR	2E-8		0.00566537	[-0.00081-0.01214] unit decrease	Affymetrix [25921788] (imputed)	N
662	chr8	10166151	10166152	rs17151684	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Oily fish consumption	335,576 European ancestry individuals	NA	8p23.1	TNKS, MSRA	rs17151684-?	NR	2E-8		0.0184277	[0.012-0.025] unit increase	Affymetrix [25921788] (imputed)	N
662	chr8	10166264	10166265	rs79680096	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	8p23.1	MSRA	rs79680096-T	0.118	4E-8		0.0101	[0.0066-0.0136] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
662	chr8	10170036	10170037	rs28611339	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	8p23.1	NR	rs28611339-T	0.1282	8E-11		1.06	[1.04-1.08]	Affymetrix, Illumina [NR] (imputed)	N
662	chr8	10170036	10170037	rs28611339	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	8p23.1	NA	rs28611339-T	0.1289	2E-10	(Female)	1.073	[1.05-1.09]	Affymetrix, Illumina [NR] (imputed)	N
662	chr8	10170338	10170339	rs6601430	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	8p23.1	NR	rs6601430-T	NR	2E-8		5.584	z score increase	Affymetrix [10847151] (imputed)	N
662	chr8	10176505	10176506	rs10089263	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	MSRA	rs10089263-A	NR	2E-9		0.01045	[0.0071-0.0138] unit decrease	Affymetrix [18485882] (imputed)	N
662	chr8	10182468	10182469	rs17151763	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	MSRA	rs17151763-A	NR	2E-10		0.011175	[0.0077-0.0146] unit increase	Affymetrix [18485882] (imputed)	N
662	chr8	10182468	10182469	rs17151763	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	8p23.1	NR	rs17151763-A	NR	9E-12		6.825	z score decrease	Affymetrix [10847151] (imputed)	N
662	chr8	10184590	10184591	rs17708090	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Depression	at least 5,919 European ancestry cases, at least 130,691 European ancestry controls	634,037 European ancestry cases, 1,308,690 European ancestry controls	8p23.1	MSRA	rs17708090-C	0.1282	1E-13		0.02525351	[0.018-0.033] unit decrease	NR [9417325] (imputed)	N
662	chr8	10186134	10186135	rs4841317	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	MSRA	rs4841317-T	NR	1E-8		0.0179832	[0.012-0.024] unit decrease	Affymetrix [323858] (imputed)	N
662	chr8	10186134	10186135	rs4841317	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	MSRA	rs4841317-T	NR	2E-9		0.0190564	[0.013-0.025] unit decrease	Affymetrix [127266] (imputed)	N
662	chr8	10186134	10186135	rs4841317	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8p23.1	MSRA	rs4841317-T	NR	2E-9		0.0173419	[0.012-0.023] unit decrease	Affymetrix [321114] (imputed)	N
662	chr8	10186134	10186135	rs4841317	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	8p23.1	MSRA	rs4841317-T	NR	5E-9		0.0168676	[0.011-0.023] unit decrease	Affymetrix [321169] (imputed)	N
662	chr8	10186788	10186789	rs7816713	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	8p23.1	NR	rs7816713-C	NR	7E-10		0.0157	[0.011-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
662	chr8	10186788	10186789	rs7816713	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	8p23.1	NR	rs7816713-C	NR	1E-17		0.0219	[0.017-0.027] unit increase	Affymetrix [9000000] (imputed)	N
662	chr8	10186788	10186789	rs7816713	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	8p23.1	NR	rs7816713-C	NR	6E-12		0.0175	[0.012-0.023] unit increase	Affymetrix [9000000] (imputed)	N
662	chr8	10187199	10187200	rs4841318	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	MSRA	rs4841318-T	NR	9E-11		0.011236	[0.0078-0.0146] unit decrease	Affymetrix [18485882] (imputed)	N
662	chr8	10190039	10190040	rs7832708	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	8p23.1	MSRA	rs7832708-T	0.4947	1E-12		0.0022	[0.0014-0.003] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
662	chr8	10190039	10190040	rs7832708	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	8p23.1	MSRA	rs7832708-T	0.492	2E-14		0.0023	[0.0015-0.0031] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
662	chr8	10190039	10190040	rs7832708	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	MSRA	rs7832708-C	NR	4E-15		0.013677	[0.01-0.017] unit decrease	Affymetrix [18485882] (imputed)	N
662	chr8	10190039	10190040	rs7832708	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	8p23.1	NR	rs7832708-T	0.481355822316018	3E-16		0.007512783	[0.0057-0.0093] unit decrease	NR [NR]	N
662	chr8	10190039	10190040	rs7832708	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	8p23.1	Intergenic	rs7832708-C	0.5108	1E-24		0.02	[0.016-0.024] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
662	chr8	10190039	10190040	rs7832708	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption (light vs heavy) interaction (2df test)	12,758 European ancestry heavy drinkers, 1,326 African American or Afro-Caribbean heavy drinkers, 648 Asian ancestry heavy drinkers, 364 Hispanic or Latin American heavy drinkers, 43,947 European ancestry light drinkers, 8,239 African American or Afro-Caribbean light drinkers, 1,141 Asian ancestry light drinkers, 4,448 Hispanic or Latin American light drinkers	42,078 European ancestry heavy drinkers, 217 African American heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic heavy drinkers, 74,706 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	8p23.1	MSRA	rs7832708-T	0.49	6E-13	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
662	chr8	10193771	10193772	rs6982308	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large HDL	115,082 European ancestry individuals	NA	8p23.1		rs6982308-C	0.480748	5E-10		0.0231203	[0.016-0.03] unit increase	NR [11722792] (imputed)	N
662	chr8	10193771	10193772	rs6982308	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	8p23.1		rs6982308-C	0.480748	1E-15		0.0308381	[0.023-0.038] unit increase	NR [11722792] (imputed)	N
662	chr8	10193771	10193772	rs6982308	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	8p23.1		rs6982308-C	0.480748	5E-10		0.0230632	[0.016-0.03] unit increase	NR [11722792] (imputed)	N
662	chr8	10193771	10193772	rs6982308	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	8p23.1		rs6982308-C	0.480748	3E-11		0.0248741	[0.018-0.032] unit increase	NR [11722792] (imputed)	N
662	chr8	10193771	10193772	rs6982308	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	8p23.1	MSRA	rs6982308-C	0.480364	1E-35		0.0247653	[0.021-0.029] unit decrease	Affymetrix [NR] (imputed)	N
662	chr8	10193771	10193772	rs6982308	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	8p23.1	NR	rs6982308-G	0.526407903486366	6E-31		0.02145483	[0.018-0.025] unit increase	NR [NR]	N
662	chr8	10197717	10197718	rs7460226	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8p23.1	MSRA	rs7460226-G	NR	2E-10		0.0185361	[0.013-0.024] unit decrease	Affymetrix [321114] (imputed)	N
662	chr8	10197717	10197718	rs7460226	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	8p23.1	MSRA	rs7460226-G	NR	6E-9		0.0169016	[0.011-0.023] unit decrease	Affymetrix [321169] (imputed)	N
662	chr8	10197717	10197718	rs7460226	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	8p23.1	MSRA	rs7460226-G	NR	1E-8		0.0181446	[0.012-0.024] unit decrease	Affymetrix [323858] (imputed)	N
662	chr8	10197717	10197718	rs7460226	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	8p23.1	MSRA	rs7460226-G	0.409371	8E-13		0.044415887	[0.032-0.057] unit increase	Affymetrix [7288503] (imputed)	N
662	chr8	10198533	10198534	rs7837979	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	MSRA	rs7837979-T	NR	3E-9		0.0189379	[0.013-0.025] unit decrease	Affymetrix [323858] (imputed)	N
662	chr8	10198533	10198534	rs7837979	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	MSRA	rs7837979-T	NR	6E-10		0.0196488	[0.013-0.026] unit decrease	Affymetrix [127266] (imputed)	N
662	chr8	10206034	10206035	rs13254598	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	MSRA	rs13254598-G	NR	5E-8		0.0199115	[0.013-0.027] unit decrease	Affymetrix [127266] (imputed)	N
662	chr8	10206034	10206035	rs13254598	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	MSRA	rs13254598-A	NR	2E-13		0.012717	[0.0093-0.0161] unit decrease	Affymetrix [18485882] (imputed)	N
662	chr8	10207463	10207464	rs4260896	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	8p23.1	NR	rs4260896-A	0.661397876539465	5E-8		0.0057756226	[0.0037-0.0079] unit decrease	NR [NR]	N
662	chr8	10209622	10209623	rs7818437	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Raw vegetable consumption	335,576 European ancestry individuals	NA	8p23.1	MSRA	rs7818437-?	NR	2E-9		0.0175262	[0.012-0.023] unit increase	Affymetrix [25921788] (imputed)	N
662	chr8	10209622	10209623	rs7818437	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fruit consumption	335,576 European ancestry individuals	NA	8p23.1	MSRA, XKR6, MTMR9, SLC35G5, GATA4	rs7818437-?	NR	1E-10		0.0187776	[0.013-0.024] unit increase	Affymetrix [25921788] (imputed)	N
662	chr8	10209622	10209623	rs7818437	31168069	Ward J	2019-06-05	Mol Psychiatry	The genomic basis of mood instability: identification of 46 loci in 363,705 UK Biobank participants, genetic correlation with psychiatric disorders, and association with gene expression and function.	Mood instability	157,039 European ancestry cases, 206,666 European ancestry controls	NA	8p23.1	intergenic	rs7818437-?	NR	3E-13		0.00996154	[0.0073-0.0126] unit decrease	Affymetrix [NR] (imputed)	N
662	chr8	10209622	10209623	rs7818437	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	MSRA	rs7818437-T	NR	8E-13		0.012554	[0.0091-0.016] unit increase	Affymetrix [18485882] (imputed)	N
662	chr8	10209622	10209623	rs7818437	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	8p23.1	NR	rs7818437-T	NR	2E-14		7.65	z score decrease	Affymetrix [10847151] (imputed)	N
662	chr8	10209622	10209623	rs7818437	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	8p23.1	FAM167A-AS1	rs7818437-T	0.240498	2E-10		6.4	z score decrease	NR [10847151] (imputed)	N
662	chr8	10212968	10212969	rs7841921	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	MSRA	rs7841921-A	NR	9E-12		0.011901	[0.0085-0.0153] unit increase	Affymetrix [18485882] (imputed)	N
662	chr8	10213461	10213462	rs4526367	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	8p23.1	NR	rs4526367-G	NR	7E-9		0.02028	[0.013-0.027] unit increase	Affymetrix [10847151] (imputed)	N
662	chr8	10214420	10214421	rs7816657	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	MSRA	rs7816657-T	NR	4E-11		0.011617	[0.0082-0.0151] unit decrease	Affymetrix [18485882] (imputed)	N
662	chr8	10216312	10216313	rs61656398	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fish- and plant-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	8p23.1	PRAG1, CLDN23, MFHAS1, ERI1, PPP1R3B, TNKS, MSRA, RP1L1, C8orf74, SOX7, PINX1, XKR6, MTMR9, SLC35G5, FAM167A, BLK, GATA4, C8orf49, FDFT1, CTSB, DEFB136, DEFB135, DEFB134, DEFB130	rs61656398-?	NR	3E-12		0.0231139	[0.017-0.03] unit increase	Affymetrix [25921788] (imputed)	N
662	chr8	10216312	10216313	rs61656398	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fish- and plant-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	8p23.1	MSRA	rs61656398-?	NR	3E-9	(male)	0.0291804	[0.02-0.039] unit increase	Affymetrix [25921788] (imputed)	N
662	chr8	10220411	10220412	rs11249992	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	MSRA	rs11249992-A	NR	3E-15		0.0254716	[0.019-0.032] unit decrease	Affymetrix [323858] (imputed)	N
662	chr8	10220411	10220412	rs11249992	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	MSRA	rs11249992-A	NR	2E-16		0.0264429	[0.02-0.033] unit decrease	Affymetrix [127266] (imputed)	N
662	chr8	10220411	10220412	rs11249992	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	MSRA	rs11249992-A	NR	1E-12		0.0225362	[0.016-0.029] unit decrease	Affymetrix [321114] (imputed)	N
662	chr8	10220411	10220412	rs11249992	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	8p23.1	MSRA	rs11249992-A	NR	3E-12		0.0222631	[0.016-0.029] unit decrease	Affymetrix [323858] (imputed)	N
662	chr8	10220411	10220412	rs11249992	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Systolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	8p23.1	intergenic	rs11249992-A	0.382	5E-8	(EA, initial)	0.413	[0.26-0.56] unit increase	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
662	chr8	10220411	10220412	rs11249992	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Systolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	8p23.1	intergenic	rs11249992-A	0.382	4E-11		0.293	[0.21-0.38] unit increase	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
663	chr8	10225158	10225159	rs7015455	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	8p23.1	MSRA	rs7015455-C	0.585	5E-6		1.0533745		NR [9372253] (imputed)	N
663	chr8	10225593	10225594	rs75293180	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	8p23.1	NR	rs75293180-?	NR	5E-8				Illumina [7760689] (imputed)	N
663	chr8	10226354	10226355	rs3088186	34002096	Mullins N	2021-05-17	Nat Genet	Genome-wide association study of more than 40,000 bipolar disorder cases provides new insights into the underlying biology.	Bipolar disorder	41,917 European ancestry cases, 371,549 European ancestry controls	NA	8p23.1	MSRA	rs3088186-C	0.713	2E-8		0.94488	[0.93-0.96]	Affymetrix, Illumina [7549318] (imputed)	N
663	chr8	10226354	10226355	rs3088186	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	8p23.1	NR	rs3088186-?	NR	4E-9		1.05802	[1.04-1.08]	Affymetrix, Illumina [12447948] (imputed)	N
663	chr8	10226559	10226560	rs1133184	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	MSRA	rs1133184-C	NR	4E-11		0.0217497	[0.015-0.028] unit decrease	Affymetrix [323858] (imputed)	N
663	chr8	10226559	10226560	rs1133184	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	MSRA	rs1133184-C	NR	2E-11		0.0222705	[0.016-0.029] unit decrease	Affymetrix [127266] (imputed)	N
663	chr8	10226559	10226560	rs1133184	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	8p23.1	MSRA	rs1133184-C	NR	6E-9		0.0190388	[0.013-0.025] unit decrease	Affymetrix [323858] (imputed)	N
663	chr8	10227909	10227910	rs62490346	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Chickenpox	107,769 European ancestry cases, 15,982 European ancestry controls	NA	8p23.1	NR	rs62490346-?	NR	7E-6		0.0848	[0.048-0.121] unit decrease	Illumina [at least 560000] (imputed)	N
663	chr8	10230801	10230802	rs73195322	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	8p23.1	NR	rs73195322-A	NR	1E-14		0.04	[0.03-0.05] unit decrease	Affymetrix [9000000] (imputed)	N
663	chr8	10236558	10236559	rs17151854	30804566	Lane JM	2019-02-25	Nat Genet	Biological and clinical insights from genetics of insomnia symptoms.	Insomnia symptoms (never/rarely vs. usually)	129,270 European ancestry cases, 108,357 European ancestry controls	17,140 European ancestry cases, 61,850 European ancestry controls	8p23.1	MSRA	rs17151854-T	0.153806	9E-9		1.03	[1.02-1.05]	Affymetrix [14661600] (imputed)	N
663	chr8	10236558	10236559	rs17151854	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	8p23.1	NR	rs17151854-T	NR	1E-9		6.077	z score increase	Affymetrix [10847151] (imputed)	N
663	chr8	10239655	10239656	rs10087341	32332799	Song W	2020-04-24	Sci Rep	Genome-wide association analysis of insomnia using data from Partners Biobank.	Insomnia	404,588 European ancestry individuals, 17,651 European, Hispanic and African ancestry individuals	NA	8p23.1	MSRA	rs10087341-C	0.167	7E-11				Illumina [5508534] (imputed)	N
663	chr8	10239655	10239656	rs10087341	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	8p23.1	NR	rs10087341-C	0.159689843773528	7E-16		0.02062409	[0.016-0.026] unit increase	NR [NR]	N
663	chr8	10240201	10240202	rs9329221	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	8p23.1	intergenic	rs9329221-T	0.45034	9E-28		10.922	z score decrease	Illumina [18485882] (imputed)	N
663	chr8	10241410	10241411	rs10283145	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	8p23.1	NR	rs10283145-T	0.512175	7E-15		0.014154	[0.011-0.018] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
663	chr8	10241410	10241411	rs10283145	32386560	Ramirez J	2020-04-29	Am J Hum Genet	Common Genetic Variants Modulate the Electrocardiographic Tpeak-to-Tend Interval.	TPE interval (resting)	71,338 European ancestry individuals	NA	8p23.1	MSRA	rs10283145-C	0.483	6E-9		0.03	[0.02-0.04] unit increase	Affymetrix [~ 9000000] (imputed)	N
663	chr8	10243100	10243101	rs6601450	30894546	Ivarsdottir EV	2019-03-20	Nat Commun	Sequence variation at ANAPC1 accounts for 24% of the variability in corneal endothelial cell density.	Corneal endothelial cell size variation coefficient	6,125 Icelandic ancestry individuals	NA	8p23.1	NR	rs6601450-T		4E-7		0.099	[NR] unit increase	Illumina [NR]	N
663	chr8	10243100	10243101	rs6601450	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	8p23.1	MSRA	rs6601450-T	0.4528	3E-9		0.02135568	[0.014-0.028] unit increase	Affymetrix [~ 2500000] (imputed)	N
663	chr8	10243100	10243101	rs6601450	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	8p23.1	MSRA	rs6601450-T	0.4528	2E-9		0.02168981	[0.015-0.029] unit increase	Affymetrix [~ 2500000] (imputed)	N
663	chr8	10243680	10243681	rs6601451	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		8p23.1	MSRA	rs6601451-C	0.48458	4E-17		0.0115699	[0.0089-0.0143] unit increase	Affymetrix [12370749]	N
663	chr8	10245522	10245523	rs57952229	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	8p23.1	MSRA	rs57952229-C	0.147	4E-8		0.0092	[0.0059-0.0125] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
663	chr8	10245787	10245788	rs11774221	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	MSRA	rs11774221-A	NR	6E-9		0.010021	[0.0066-0.0134] unit increase	Affymetrix [18485882] (imputed)	N
663	chr8	10246324	10246325	rs12543645	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	8p23.1	MSRA	rs12543645-C	NR	4E-7	(EA)	1.059	[1.04-1.08]	Illumina [6627481] (imputed)	N
663	chr8	10246324	10246325	rs12543645	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	8p23.1	MSRA	rs12543645-C	NR	3E-7		1.055	[1.03-1.08]	Illumina [6627481] (imputed)	N
663	chr8	10246324	10246325	rs12543645	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	8p23.1	MSRA	rs12543645-C	NR	3E-8		1.058	[1.04-1.08]	Affymetrix, Illumina [up to 5107227] (imputed)	N
663	chr8	10247274	10247274	rs34986609	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	8p23.1		rs34986609-C	0.514818	6E-20		0.0358671	[0.028-0.044] unit increase	NR [11722792] (imputed)	N
663	chr8	10247274	10247274	rs34986609	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small HDL	115,082 European ancestry individuals	NA	8p23.1		rs34986609-C	0.514818	7E-9		0.0245294	[0.016-0.033] unit decrease	NR [11722792] (imputed)	N
663	chr8	10247274	10247274	rs34986609	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small HDL	115,082 European ancestry individuals	NA	8p23.1		rs34986609-C	0.514818	6E-9		0.0244983	[0.016-0.033] unit decrease	NR [11722792] (imputed)	N
663	chr8	10247975	10247976	rs9650650	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	8p23.1	MSRA	rs9650650-T	0.3578	2E-20		0.1869	[0.15-0.23] mmHg increase	Affymetrix [NR] (imputed)	N
663	chr8	10250047	10250048	rs12541491	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	8p23.1	NR	rs12541491-T	NR	3E-7		1.06	[NR]	Illumina [7158791] (imputed)	N
663	chr8	10250398	10250399	rs7831971	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	8p23.1		rs7831971-G	0.487522	7E-11		0.0268127	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
663	chr8	10250398	10250399	rs7831971	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	8p23.1		rs7831971-A	NR	1E-16		0.0197	[0.015-0.024] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
663	chr8	10250698	10250699	rs13264580	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls	NA	8p23.1	MSRA	rs13264580-T	0.379121	3E-13		0.059026767	[0.043-0.075] unit increase	Affymetrix [7288503] (imputed)	N
663	chr8	10251153	10251154	rs2001337	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	8p23.1	MSRA	rs2001337-A	0.3599	5E-30		0.3192	[0.26-0.37] mmHg increase	Affymetrix [NR] (imputed)	N
663	chr8	10255104	10255105	rs13252982	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8p23.1	MSRA	rs13252982-C	NR	2E-15		0.0225903	[0.017-0.028] unit decrease	Affymetrix [321114] (imputed)	N
663	chr8	10255104	10255105	rs13252982	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	8p23.1	MSRA	rs13252982-C	NR	9E-14		0.0212213	[0.016-0.027] unit decrease	Affymetrix [321169] (imputed)	N
663	chr8	10255401	10255402	rs11777976	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	8p23.1		rs11777976-A	0.496794	1E-14		0.0311379	[0.023-0.039] unit increase	NR [11722792] (imputed)	N
663	chr8	10255401	10255402	rs11777976	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	8p23.1	NR	rs11777976-G	0.504594	2E-9		0.039973	[0.027-0.053] unit decrease	Affymetrix [17914406] (imputed)	N
663	chr8	10260552	10260553	rs1962073	25117820	Schneider BP	2014-08-12	Br J Cancer	Genetic variant predicts bevacizumab-induced hypertension in ECOG-5103 and ECOG-2100.	Response to chemotherapy in breast cancer hypertensive cases (cumulative dose) (bevacizumab)	255 European ancestry cases, 387 European ancestry controls		8p23.1	MSRA	rs1962073-?	NR	2E-6		1.69	[NR]	Illumina [up to 810372] (imputed)	N
663	chr8	10262372	10262373	rs1962392	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	MSRA	rs1962392-G	NR	2E-8		0.0193555	[0.013-0.026] unit increase	Affymetrix [323858] (imputed)	N
663	chr8	10262372	10262373	rs1962392	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	MSRA	rs1962392-G	NR	2E-8		0.0194208	[0.013-0.026] unit increase	Affymetrix [127266] (imputed)	N
663	chr8	10262372	10262373	rs1962392	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	MSRA	rs1962392-C	NR	1E-8		0.0098498	[0.0064-0.0133] unit increase	Affymetrix [18485882] (imputed)	N
663	chr8	10262372	10262373	rs1962392	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	8p23.1	NR	rs1962392-C	NR	6E-9		5.81	z score decrease	Affymetrix [10847151] (imputed)	N
663	chr8	10263281	10263282	rs73197281	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	8p23.1		rs73197281-C	NR	2E-16		0.0187	[0.014-0.023] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
663	chr8	10263963	10263964	rs34775321	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	MSRA	rs34775321-G	NR	9E-9		0.0197666	[0.013-0.027] unit decrease	Affymetrix [323858] (imputed)	N
663	chr8	10263963	10263964	rs34775321	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	MSRA	rs34775321-G	NR	2E-9		0.0206774	[0.014-0.027] unit decrease	Affymetrix [127266] (imputed)	N
663	chr8	10264259	10264260	rs11786677	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption interaction (2df test)	63,608 European ancestry drinkers, 10,193 African American or Afro-Caribbean heavy drinkers,  2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,494 European ancestry non-drinkers, 11,224 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,002 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,452 Hispanic drinkers, 43,316 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,945 Asian ancestry non-drinkers, 6,925 Hispanic non-drinkers	8p23.1	MSRA	rs11786677-A	0.58	6E-49	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
663	chr8	10265711	10265712	rs6999466	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8p23.1	MSRA	rs6999466-G	NR	6E-12		0.0201304	[0.014-0.026] unit decrease	Affymetrix [321114] (imputed)	N
663	chr8	10265711	10265712	rs6999466	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	8p23.1	MSRA	rs6999466-G	NR	8E-10		0.0180599	[0.012-0.024] unit decrease	Affymetrix [321169] (imputed)	N
663	chr8	10265711	10265712	rs6999466	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical thickness (MOSTest)	26,502 European ancestry individuals	NA	8p23.1	KCNK3, SLC35F6, CENPA, DPYSL5, MAPRE3, TMEM214, AGBL5, OST4, EMILIN1, KHK, CGREF1, ABHD1, PREB, C2orf53, TCF23	rs6999466-?		3E-8				NR [7428630] (imputed)	N
663	chr8	10266705	10266706	rs12550717	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (min-P)	26,502 European ancestry individuals	NA	8p23.1	SLC45A3, NUCKS1, AC119673.1, RAB7L1, SLC41A1, PM20D1	rs12550717-?		8E-11				NR [7428630] (imputed)	N
663	chr8	10266705	10266706	rs12550717	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (min-P)	26,502 European ancestry individuals	NA	8p23.1	NR	rs12550717-?		3E-10				NR [7428630] (imputed)	N
663	chr8	10268735	10268736	rs1986971	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	8p23.1	MSRA	rs1986971-A	0.7045	4E-18		0.2377	[0.18-0.29] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
663	chr8	10268804	10268805	rs1986972	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Cooked vegetable consumption	335,576 European ancestry individuals	NA	8p23.1	MSRA, RP1L1, C8orf74	rs1986972-?	NR	2E-10		0.0162265	[0.011-0.021] unit decrease	Affymetrix [25921788] (imputed)	N
663	chr8	10268804	10268805	rs1986972	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	MSRA	rs1986972-G	NR	1E-15		0.013869	[0.01-0.017] unit decrease	Affymetrix [18485882] (imputed)	N
663	chr8	10272438	10272439	rs11775625	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8p23.1	MSRA	rs11775625-A	NR	2E-8		0.0164442	[0.011-0.022] unit decrease	Affymetrix [321114] (imputed)	N
663	chr8	10277728	10277728	rs56115529	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	MSRA	rs56115529-C	NR	4E-8		0.0179695	[0.012-0.024] unit decrease	Affymetrix [323858] (imputed)	N
663	chr8	10277728	10277728	rs56115529	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	MSRA	rs56115529-C	NR	4E-9		0.0192461	[0.013-0.026] unit decrease	Affymetrix [127266] (imputed)	N
663	chr8	10277817	10277818	rs4841335	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	MSRA	rs4841335-T	NR	5E-12		0.01217	[0.0087-0.0156] unit increase	Affymetrix [18485882] (imputed)	N
663	chr8	10277977	10277978	rs73197294	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	MSRA	rs73197294-G	NR	8E-10		0.0225503	[0.015-0.03] unit increase	Affymetrix [323858] (imputed)	N
663	chr8	10277977	10277978	rs73197294	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	MSRA	rs73197294-G	NR	3E-10		0.0232062	[0.016-0.03] unit increase	Affymetrix [127266] (imputed)	N
663	chr8	10277977	10277978	rs73197294	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Processed meat consumption	335,576 European ancestry individuals	NA	8p23.1	MSRA, RP1L1, C8orf74, SOX7, XKR6, MTMR9, SLC35G5, C8orf12, FAM167A, BLK, GATA4, C8orf49, NEIL2, FDFT1, CTSB	rs73197294-?	NR	4E-10		0.017835	[0.012-0.023] unit decrease	Affymetrix [25921788] (imputed)	N
663	chr8	10278677	10278678	rs11250005	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	MSRA	rs11250005-G	NR	1E-9		0.0194908	[0.013-0.026] unit decrease	Affymetrix [321114] (imputed)	N
663	chr8	10278677	10278678	rs11250005	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	8p23.1	MSRA	rs11250005-G	NR	8E-9		0.0186344	[0.012-0.025] unit decrease	Affymetrix [323858] (imputed)	N
663	chr8	10280227	10280228	rs7831557	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small VLDL	115,082 European ancestry individuals	NA	8p23.1		rs7831557-G	0.482594	4E-18		0.0345317	[0.027-0.042] unit decrease	NR [11722792] (imputed)	N
663	chr8	10280227	10280228	rs7831557	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small HDL	115,082 European ancestry individuals	NA	8p23.1		rs7831557-G	0.482594	8E-16		0.0321281	[0.024-0.04] unit decrease	NR [11722792] (imputed)	N
663	chr8	10280227	10280228	rs7831557	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium HDL	115,082 European ancestry individuals	NA	8p23.1		rs7831557-G	0.482594	9E-15		0.0314635	[0.024-0.039] unit decrease	NR [11722792] (imputed)	N
663	chr8	10280227	10280228	rs7831557	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in HDL	115,082 European ancestry individuals	NA	8p23.1		rs7831557-G	0.482594	7E-14		0.0302728	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
663	chr8	10280227	10280228	rs7831557	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total fatty acid levels	115,006 European ancestry individuals	NA	8p23.1		rs7831557-G	0.482575	1E-11		0.0278164	[0.02-0.036] unit decrease	NR [11722792] (imputed)	N
663	chr8	10280227	10280228	rs7831557	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Saturated fatty acid levels	115,006 European ancestry individuals	NA	8p23.1		rs7831557-G	0.482575	6E-9		0.0237001	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
663	chr8	10280227	10280228	rs7831557	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Monounsaturated fatty acid levels	115,006 European ancestry individuals	NA	8p23.1		rs7831557-G	0.482575	5E-16		0.0330396	[0.025-0.041] unit decrease	NR [11722792] (imputed)	N
663	chr8	10280227	10280228	rs7831557	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Creatinine levels	110,051 European ancestry individuals	NA	8p23.1		rs7831557-G	0.482672	1E-8		0.0201784	[0.013-0.027] unit decrease	NR [11722792] (imputed)	N
663	chr8	10280227	10280228	rs7831557	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	8p23.1		rs7831557-G	0.482551	7E-19		0.0350855	[0.027-0.043] unit increase	NR [11722792] (imputed)	N
663	chr8	10280227	10280228	rs7831557	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	8p23.1		rs7831557-G	0.482594	2E-9		0.0232131	[0.016-0.031] unit increase	NR [11722792] (imputed)	N
663	chr8	10280227	10280228	rs7831557	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	3-Hydroxybutyrate levels	113,594 European ancestry individuals	NA	8p23.1		rs7831557-G	0.482804	2E-11		0.0274428	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
663	chr8	10280227	10280228	rs7831557	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	8p23.1		rs7831557-G	0.45	4E-36		12.55	z score increase	Affymetrix [9061022] (imputed)	N
663	chr8	10280227	10280228	rs7831557	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	8p23.1	NR	rs7831557-G	0.4809	1E-17				NR [9056863] (imputed)	N
663	chr8	10280227	10280228	rs7831557	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	8p23.1	NR	rs7831557-G	0.4809	1E-17				NR [9056863] (imputed)	N
663	chr8	10280227	10280228	rs7831557	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	MSRA	rs7831557-G	NR	6E-13		0.0224828	[0.016-0.029] unit decrease	Affymetrix [323858] (imputed)	N
663	chr8	10280227	10280228	rs7831557	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	MSRA	rs7831557-G	NR	2E-14		0.0240254	[0.018-0.03] unit decrease	Affymetrix [127266] (imputed)	N
663	chr8	10280227	10280228	rs7831557	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	MSRA	rs7831557-G	NR	1E-13		0.022904	[0.017-0.029] unit decrease	Affymetrix [321114] (imputed)	N
663	chr8	10280227	10280228	rs7831557	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	8p23.1	MSRA	rs7831557-G	NR	4E-13		0.0225264	[0.016-0.029] unit decrease	Affymetrix [323858] (imputed)	N
663	chr8	10280227	10280228	rs7831557	32581359	Saevarsdottir S	2020-06-24	Nature	FLT3 stop mutation increases FLT3 ligand level and risk of autoimmune thyroid disease.	Autoimmune thyroid disease	30,234 European ancestry cases, 724,172 European ancestry controls	NA	8p23.1	MSRA	rs7831557-A	0.506	3E-11		1.0638298	[NR]	Affymetrix, Illumina [42900000] (imputed)	N
663	chr8	10280227	10280228	rs7831557	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	8p23.1	MSRA	rs7831557-G	0.482275	5E-13		0.06613497	[0.048-0.084] unit decrease	Affymetrix [7288503] (imputed)	N
663	chr8	10280817	10280818	rs6985267	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	8p23.1	NR	rs6985267-C	NR	2E-12		0.0204	[0.015-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
663	chr8	10280817	10280818	rs6985267	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	8p23.1	NR	rs6985267-C	NR	1E-16		0.0239	[0.018-0.03] unit increase	Affymetrix [9000000] (imputed)	N
663	chr8	10283425	10283426	rs3750310	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	8p23.1	NR	rs3750310-G	0.488932	3E-18		0.0184298	[0.014-0.023] unit increase	NR [NR]	N
663	chr8	10283425	10283426	rs3750310	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	8p23.1	MSRA	rs3750310-?	NR	8E-6	(Hispanic)	1.28	[1.15-1.42]	Illumina [at least 5000000] (imputed)	N
663	chr8	10283601	10283602	rs3750311	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small HDL	115,082 European ancestry individuals	NA	8p23.1		rs3750311-C	0.489219	1E-14		0.0318852	[0.024-0.04] unit decrease	NR [11722792] (imputed)	N
663	chr8	10283601	10283602	rs3750311	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small HDL	115,082 European ancestry individuals	NA	8p23.1		rs3750311-C	0.489219	4E-15		0.0322752	[0.024-0.04] unit decrease	NR [11722792] (imputed)	N
663	chr8	10283601	10283602	rs3750311	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small HDL particles	115,082 European ancestry individuals	NA	8p23.1		rs3750311-C	0.489219	8E-11		0.0269099	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
663	chr8	10283747	10283748	rs7005363	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Polyunsaturated fatty acid levels	115,006 European ancestry individuals	NA	8p23.1		rs7005363-T	0.54214	2E-9		0.0243034	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
663	chr8	10283747	10283748	rs7005363	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-6 fatty acid levels	115,006 European ancestry individuals	NA	8p23.1		rs7005363-T	0.54214	2E-9		0.0243674	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
663	chr8	10283747	10283748	rs7005363	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Linoleic acid levels	115,006 European ancestry individuals	NA	8p23.1		rs7005363-T	0.54214	3E-9		0.0241611	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
663	chr8	10283747	10283748	rs7005363	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	8p23.1	PRR23D2, SGK223, CLDN23, MFHAS1, ERI1, PPP1R3B, RP11-10A14.4, TNKS, MSRA, PRSS55, RP1L1, C8orf74, SOX7, PINX1, XKR6, AF131215.5, MTMR9, SLC35G5, C8orf12, FAM167A, BLK, GATA4, C8orf49, NEIL2, FDFT1, RP11-297N6.4, CTSB, DEFB136, DEFB135, DEFB134, RP11-481A20.11, DEFB130	rs7005363-?		5E-26				NR [7428630] (imputed)	N
663	chr8	10283747	10283748	rs7005363	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	MSRA	rs7005363-T	NR	3E-12		0.012122	[0.0087-0.0155] unit decrease	Affymetrix [18485882] (imputed)	N
663	chr8	10285809	10285810	rs3750314	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	8p23.1	MSRA	rs3750314-T	0.748368	3E-12	(methionine sulfoxide)	0.189	[0.14-0.24] unit increase	Illumina [13039987] (imputed)	N
663	chr8	10285809	10285810	rs3750314	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	1,509 European ancestry individuals	8p23.1	MSRA	rs3750314-T	0.748368	3E-12	(methionine sulfoxide)	0.189	[0.14-0.24] unit increase	Illumina [13039987] (imputed)	N
663	chr8	10286510	10286511	rs10429305	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	MSRA	rs10429305-G	NR	2E-8		0.0097524	[0.0063-0.0132] unit increase	Affymetrix [18485882] (imputed)	N
663	chr8	10287976	10287977	rs9329222	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	8p23.1	MSRA	rs9329222-C	0.0884280439992791	2E-6	(G_unclassified_F_Porphyromonadaceae_HB)	0.41006	[0.24-0.58] unit decrease	Illumina [7711310] (imputed)	N
663	chr8	10288991	10288992	rs34906836	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	ENSG00000261451	rs34906836-C	NR	7E-11		0.011344	[0.0079-0.0147] unit decrease	Affymetrix [18485882] (imputed)	N
663	chr8	10289987	10289988	rs10096972	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling worry	372,869 European ancestry individuals	NA	8p23.1	MSRA	rs10096972-T	0.165346	5E-9		5.834	unit increase	NR [10847151] (imputed)	N
663	chr8	10291931	10291932	rs17184083	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	ENSG00000261451	rs17184083-G	NR	2E-9		0.010217	[0.0069-0.0136] unit increase	Affymetrix [18485882] (imputed)	N
663	chr8	10300131	10300132	rs7837520	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	ENSG00000261451	rs7837520-A	NR	2E-8		0.0096799	[0.0063-0.0131] unit decrease	Affymetrix [18485882] (imputed)	N
663	chr8	10306927	10306928	rs4401911	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	ENSG00000261451	rs4401911-G	NR	1E-8		0.009956	[0.0065-0.0134] unit increase	Affymetrix [18485882] (imputed)	N
663	chr8	10309031	10309032	rs34144801	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	8p23.1	NR	rs34144801-C	0.175459487011279	2E-8		0.01431544	[0.0093-0.0193] unit decrease	NR [NR]	N
663	chr8	10321880	10321881	rs6601465	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	RP11-981G7.2	rs6601465-G	NR	2E-8		0.018346	[0.012-0.025] unit decrease	Affymetrix [127266] (imputed)	N
663	chr8	10321880	10321881	rs6601465	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	RP11-981G7.2	rs6601465-G	NR	5E-10		0.0200695	[0.014-0.026] unit decrease	Affymetrix [321114] (imputed)	N
663	chr8	10325904	10325905	rs150491901	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	8p23.1	NR	rs150491901-A	NR	1E-9		0.02133	[0.014-0.028] unit increase	Affymetrix [10847151] (imputed)	N
663	chr8	10331208	10331209	rs6992818	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8p23.1	RP11-981G7.2	rs6992818-G	NR	8E-9		0.0171626	[0.011-0.023] unit decrease	Affymetrix [321114] (imputed)	N
663	chr8	10331208	10331209	rs6992818	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	8p23.1	NR	rs6992818-?		9E-9	(Inferior fronto-occipital fasciculus)			NR [8955960] (imputed)	N
663	chr8	10331753	10331754	rs9329223	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8p23.1	RP11-981G7.2	rs9329223-A	NR	2E-10		0.0182916	[0.013-0.024] unit increase	Affymetrix [321114] (imputed)	N
663	chr8	10331753	10331754	rs9329223	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	8p23.1	RP11-981G7.2	rs9329223-A	NR	5E-10		0.0179534	[0.012-0.024] unit increase	Affymetrix [321169] (imputed)	N
663	chr8	10333476	10333477	rs7833781	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	RP11-981G7.2	rs7833781-A	NR	5E-8		0.0174565	[0.011-0.024] unit increase	Affymetrix [323858] (imputed)	N
663	chr8	10333476	10333477	rs7833781	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	RP11-981G7.2	rs7833781-A	NR	1E-8		0.0182635	[0.012-0.025] unit increase	Affymetrix [127266] (imputed)	N
663	chr8	10334693	10334694	rs4841356	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	RP11-981G7.2	rs4841356-C	NR	2E-8		0.0097412	[0.0063-0.0131] unit increase	Affymetrix [18485882] (imputed)	N
663	chr8	10334780	10334781	rs11782819	20452100	Kramer PL	2010-05-06	Neurobiol Aging	Alzheimer disease pathology in cognitively healthy elderly: a genome-wide study.	Alzheimer's disease	185 European ancestry low NFT individuals, 114 European ancestry high NFT individuals	NA	8p23.1	MSRA	rs11782819-?	NR	3E-6				Illumina [292175]	N
663	chr8	10352307	10352308	rs4281086	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	8p23.1	UNQ9391, PRSS55	rs4281086-C	0.304	4E-6	(WC change )	0.04	[NR] cm/y increase	Illumina [899892]	N
664	chr8	10375973	10375973	rs111818085	32180562	Kulyte A	2020-01-25	Mol Metab	Genome-wide association study of adipocyte lipolysis in the GENetics of adipocyte lipolysis (GENiAL) cohort.	Stimulated adipocyte lipolysis	874 European ancestry individuals	NA	8p23.1	NR	rs111818085-?	0.887842	3E-6		0.094	[0.055-0.133] unit decrease	NR [9260588] (imputed)	N
664	chr8	10392997	10392998	rs62492802	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		PRSS51	rs62492802-?	NR	3E-8	(female)	1.62675	[NR] unit decrease	Affymetrix [NR] (imputed)	N
664	chr8	10404018	10404019	rs4566993	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	8p23.1	MSRA	rs4566993-T	0.161793	4E-8		5.48	z score increase	NR [10847151] (imputed)	N
664	chr8	10414854	10414855	rs75681102	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	PRSS55	rs75681102-T	NR	7E-9		0.0240412	[0.016-0.032] unit decrease	Affymetrix [321114] (imputed)	N
664	chr8	10414854	10414855	rs75681102	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	8p23.1	PRSS55	rs75681102-T	NR	5E-8		0.0227562	[0.015-0.031] unit decrease	Affymetrix [323858] (imputed)	N
664	chr8	10418220	10418221	rs4841381	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	PRSS55	rs4841381-G	NR	7E-9		0.0208186	[0.014-0.028] unit increase	Affymetrix [323858] (imputed)	N
664	chr8	10418220	10418221	rs4841381	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	PRSS55	rs4841381-G	NR	5E-9		0.020996	[0.014-0.028] unit increase	Affymetrix [127266] (imputed)	N
664	chr8	10419302	10419303	rs7815294	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	PRSS55	rs7815294-G	NR	7E-10		0.010599	[0.0072-0.014] unit increase	Affymetrix [18485882] (imputed)	N
664	chr8	10419302	10419303	rs7815294	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	8p23.1	NR	rs7815294-A	NR	3E-9		5.951	z score increase	Affymetrix [10847151] (imputed)	N
664	chr8	10431421	10431422	rs11250033	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	8p23.1	NR	rs11250033-A	0.6338	1E-9	(Superior Temporal)	12.327022	[8.35-16.31] unit decrease	Affymetrix, Illumina [NR]	N
664	chr8	10431421	10431422	rs11250033	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	PRSS55	rs11250033-G	NR	4E-10		0.010868	[0.0075-0.0143] unit decrease	Affymetrix [18485882] (imputed)	N
664	chr8	10431485	10431486	rs12548232	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	8p23.1	NR	rs12548232-T	0.7984	3E-7	(Superior Temporal)	12.35775	[7.64-17.08] unit increase	Affymetrix, Illumina [NR]	N
664	chr8	10431577	10431578	rs35258156	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	8p23.1	NR	rs35258156-G	0.456997342069911	3E-8		0.005106298	[0.0033-0.0069] unit decrease	NR [NR]	N
664	chr8	10434141	10434142	rs182934215	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	8p23.1	Intergenic	rs182934215-C	0.993	1E-6		0.072	unit increase	Illumina [NR] (imputed)	N
664	chr8	10435352	10435353	rs13259457	32918910	Dong J	2020-09-09	Gastroenterology	Sex-Specific Genetic Associations for Barrett's Esophagus and Esophageal Adenocarcinoma.	Barrett's esophagus or esophageal adenocarcinoma x sex interaction (2df test)	6,758 European ancestry male cases, 1,670 European ancestry female cases, 7,489 European ancestry male controls, 6,174 European ancestry female controls	NA	8p23.1	PRSS55, RP1L1	rs13259457-C	NR	2E-8				Illumina [up to 9353006] (imputed)	N
664	chr8	10435352	10435353	rs13259457	32918910	Dong J	2020-09-09	Gastroenterology	Sex-Specific Genetic Associations for Barrett's Esophagus and Esophageal Adenocarcinoma.	Barrett's esophagus  or Esophageal adenocarcinoma	6,758 European ancestry male cases, 1,670 European ancestry female cases, 7,489 European ancestry male controls, 6,174 European ancestry female controls	NA	8p23.1	PRSS55, RP1L1	rs13259457-C	NR	7E-9	(female)	0.62	[0.53-0.73]	Illumina [up to 9353006] (imputed)	N
664	chr8	10437867	10437868	rs13250449	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	8p23.1	NR	rs13250449-A	NR	2E-18		0.0282	[0.022-0.034] unit increase	Affymetrix [9000000] (imputed)	N
664	chr8	10438043	10438044	rs34092276	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	RP1L1	rs34092276-C	NR	2E-9		0.0191289	[0.013-0.025] unit increase	Affymetrix [323858] (imputed)	N
664	chr8	10438043	10438044	rs34092276	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	RP1L1	rs34092276-C	NR	6E-10		0.0197189	[0.013-0.026] unit increase	Affymetrix [127266] (imputed)	N
664	chr8	10438043	10438044	rs34092276	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	RP1L1	rs34092276-C	NR	4E-9		0.0185094	[0.012-0.025] unit increase	Affymetrix [321114] (imputed)	N
664	chr8	10457149	10457150	rs62490813	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	RP1L1	rs62490813-C	NR	2E-8		0.0183439	[0.012-0.025] unit decrease	Affymetrix [127266] (imputed)	N
664	chr8	10458999	10459000	rs10090510	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	RP1L1	rs10090510-T	NR	3E-11		0.0214989	[0.015-0.028] unit increase	Affymetrix [323858] (imputed)	N
664	chr8	10458999	10459000	rs10090510	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	RP1L1	rs10090510-T	NR	1E-11		0.0220499	[0.016-0.028] unit increase	Affymetrix [127266] (imputed)	N
664	chr8	10458999	10459000	rs10090510	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	RP1L1	rs10090510-T	NR	1E-10		0.0207102	[0.014-0.027] unit increase	Affymetrix [321114] (imputed)	N
664	chr8	10458999	10459000	rs10090510	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	8p23.1	RP1L1	rs10090510-T	NR	3E-9		0.0190063	[0.013-0.025] unit increase	Affymetrix [323858] (imputed)	N
664	chr8	10460839	10460840	rs9987351	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	8p23.1	NR	rs9987351-A	NR	8E-12		0.0208	[0.015-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
664	chr8	10462805	10462806	rs4841398	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	8p23.1	RP1L1	rs4841398-G	0.16	3E-6	(Cystathionine )	0.02	[NR] umol/L increase	Illumina [899892]	N
664	chr8	10463943	10463944	rs7816990	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	RP1L1	rs7816990-A	NR	2E-10		0.0226665	[0.016-0.03] unit decrease	Affymetrix [323858] (imputed)	N
664	chr8	10463943	10463944	rs7816990	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	RP1L1	rs7816990-A	NR	4E-11		0.0236801	[0.017-0.031] unit decrease	Affymetrix [127266] (imputed)	N
664	chr8	10463943	10463944	rs7816990	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	RP1L1	rs7816990-A	NR	1E-11		0.0239217	[0.017-0.031] unit decrease	Affymetrix [321114] (imputed)	N
664	chr8	10463943	10463944	rs7816990	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	8p23.1	RP1L1	rs7816990-A	NR	3E-10		0.0224277	[0.015-0.029] unit decrease	Affymetrix [323858] (imputed)	N
664	chr8	10464884	10464885	rs56382513	30894546	Ivarsdottir EV	2019-03-20	Nat Commun	Sequence variation at ANAPC1 accounts for 24% of the variability in corneal endothelial cell density.	Corneal endothelial cell size variation coefficient	6,125 Icelandic ancestry individuals	NA	8p23.1	NR	rs56382513-C		8E-7		0.094	[NR] unit increase	Illumina [NR]	N
664	chr8	10465398	10465399	rs11782670	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	8p23.1	RP1L1	rs11782670-A	0.119	1E-8		0.0103	[0.0068-0.0138] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
664	chr8	10466481	10466482	rs13267180	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	RP1L1	rs13267180-A	NR	2E-12		0.0220935	[0.016-0.028] unit increase	Affymetrix [323858] (imputed)	N
664	chr8	10466481	10466482	rs13267180	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	RP1L1	rs13267180-A	NR	3E-13		0.0228023	[0.017-0.029] unit increase	Affymetrix [127266] (imputed)	N
664	chr8	10466481	10466482	rs13267180	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	RP1L1	rs13267180-G	NR	1E-11		0.011777	[0.0084-0.0152] unit increase	Affymetrix [18485882] (imputed)	N
664	chr8	10469232	10469233	rs35602868	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	RP1L1	rs35602868-A	NR	2E-11		0.0210612	[0.015-0.027] unit decrease	Affymetrix [321114] (imputed)	N
664	chr8	10469232	10469233	rs35602868	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	8p23.1	RP1L1	rs35602868-A	NR	3E-11		0.0208605	[0.015-0.027] unit decrease	Affymetrix [323858] (imputed)	N
664	chr8	10469232	10469233	rs35602868	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	8p23.1	NR	rs35602868-G	0.551825	6E-12		0.0461204	[0.033-0.06] unit decrease	Affymetrix [17914406] (imputed)	N
664	chr8	10476527	10476528	rs62492260	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Monocyte chemoattractant protein-3 levels	843 Finnish ancestry individuals	NA	8p23.1	NR	rs62492260-G		2E-6		0.2788	[0.17-0.39] SD units increase	NR [10700000] (imputed)	N
664	chr8	10482247	10482248	rs9329227	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	8p23.1	RP1L1	rs9329227-C	0.634	9E-12		0.0084	[0.006-0.0108] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
665	chr8	10490217	10490218	rs13259086	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	RP1L1	rs13259086-C	NR	4E-10		0.0201583	[0.014-0.026] unit decrease	Affymetrix [323858] (imputed)	N
665	chr8	10490217	10490218	rs13259086	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	RP1L1	rs13259086-C	NR	5E-11		0.0212622	[0.015-0.028] unit decrease	Affymetrix [127266] (imputed)	N
665	chr8	10490217	10490218	rs13259086	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	8p23.1	RP1L1	rs13259086-C	NR	1E-9		0.019374	[0.013-0.026] unit decrease	Affymetrix [323858] (imputed)	N
665	chr8	10491683	10491684	rs4455790	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p23.1	NR	rs4455790-C	NR	4E-13		0.033	unit increase	Affymetrix [at least 7091467] (imputed)	N
665	chr8	10491683	10491684	rs4455790	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p23.1	NR	rs4455790-C	0.283	5E-11	(EA)	0.033	unit increase	Affymetrix [at least 7091467] (imputed)	N
665	chr8	10491683	10491684	rs4455790	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p23.1	NR	rs4455790-C	NR	8E-7		0.021	unit decrease	Affymetrix [at least 7091467] (imputed)	N
665	chr8	10494737	10494738	rs7002088	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8p23.1	RP1L1	rs7002088-C	NR	1E-9		0.0174407	[0.012-0.023] unit decrease	Affymetrix [321114] (imputed)	N
665	chr8	10494737	10494738	rs7002088	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	RP1L1	rs7002088-C	NR	2E-8		0.0173464	[0.011-0.023] unit decrease	Affymetrix [321114] (imputed)	N
665	chr8	10494737	10494738	rs7002088	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	8p23.1	RP1L1	rs7002088-C	NR	4E-9		0.0168604	[0.011-0.022] unit decrease	Affymetrix [321169] (imputed)	N
665	chr8	10494737	10494738	rs7002088	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	RP1L1	rs7002088-A	NR	2E-11		0.011667	[0.0083-0.0151] unit decrease	Affymetrix [18485882] (imputed)	N
665	chr8	10508800	10508801	rs7821092	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	8p23.1	RP1L1	rs7821092-C	0.5705	2E-11		0.0208	[0.015-0.027] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
665	chr8	10510988	10510989	rs73198802	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	8p23.1		rs73198802-C	NR	2E-11		0.0165	[0.012-0.021] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
665	chr8	10510988	10510989	rs73198802	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	8p23.1		rs73198802-C	NR	5E-14		0.0184	[0.014-0.023] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
665	chr8	10511120	10511121	rs11781592	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8p23.1	RP1L1	rs11781592-G	NR	4E-9		0.0170914	[0.011-0.023] unit decrease	Affymetrix [321114] (imputed)	N
665	chr8	10511120	10511121	rs11781592	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	RP1L1	rs11781592-G	NR	4E-11		0.0207385	[0.015-0.027] unit decrease	Affymetrix [321114] (imputed)	N
665	chr8	10511120	10511121	rs11781592	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	8p23.1	RP1L1	rs11781592-G	NR	3E-8		0.0160856	[0.01-0.022] unit decrease	Affymetrix [321169] (imputed)	N
665	chr8	10511120	10511121	rs11781592	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	8p23.1	RP1L1	rs11781592-G	NR	1E-11		0.0213058	[0.015-0.027] unit decrease	Affymetrix [323858] (imputed)	N
665	chr8	10511120	10511121	rs11781592	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	8p23.1	RP1L1	rs11781592-A	0.571676	1E-19		0.021133456	[0.017-0.026] unit increase	Affymetrix [93095623] (imputed)	N
665	chr8	10512510	10512511	rs9969466	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	RP1L1	rs9969466-G	NR	4E-11		0.0209133	[0.015-0.027] unit decrease	Affymetrix [127266] (imputed)	N
665	chr8	10516373	10516374	rs4841409	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption interaction (2df test)	63,608 European ancestry drinkers, 10,193 African American or Afro-Caribbean heavy drinkers,  2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,494 European ancestry non-drinkers, 11,224 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,002 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,452 Hispanic drinkers, 43,316 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,945 Asian ancestry non-drinkers, 6,925 Hispanic non-drinkers	8p23.1	RP1L1	rs4841409-A	0.44	5E-23	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
665	chr8	10516373	10516374	rs4841409	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption interaction (2df test)	91,110 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	237,996 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,315 European ancestry non-drinkers, 2,761 African ancestry non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	8p23.1	RP1L1	rs4841409-A	0.44	5E-11	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
665	chr8	10516373	10516374	rs4841409	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption (light vs heavy) interaction (2df test)	56,705 European ancestry heavy and light drinkers, 9,725 African American or Afro-Caribbean heavy and light drinkers, 1,789 Asian ancestry heavy and light drinkers, 4,812 Hispanic or Latin American heavy and light drinkers	42,077 European ancestry heavy drinkers, 217 African American heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic ancestry heavy drinkers, 74,701 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	8p23.1	RP1L1	rs4841409-A	0.44	6E-12	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
665	chr8	10517346	10517347	rs11775702	29769521	Ramirez J	2018-05-16	Nat Commun	Thirty loci identified for heart rate response to exercise and recovery implicate autonomic nervous system.	Heart rate response to exercise	up to 35,455 European ancestry females, up to 31,802 European ancestry males	NA	8p23.1	NR	rs11775702-C	0.578	1E-8	(females)	0.506	[0.33-0.68] bpm decrease	Affymetrix [~ 7800000] (imputed)	N
665	chr8	10518499	10518500	rs10096777	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption (light vs heavy) interaction (2df test)	12,758 European ancestry heavy drinkers, 1,326 African American or Afro-Caribbean heavy drinkers, 648 Asian ancestry heavy drinkers, 364 Hispanic or Latin American heavy drinkers, 43,947 European ancestry light drinkers, 8,239 African American or Afro-Caribbean light drinkers, 1,141 Asian ancestry light drinkers, 4,448 Hispanic or Latin American light drinkers	42,078 European ancestry heavy drinkers, 217 African American heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic heavy drinkers, 74,706 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	8p23.1	RP1L1	rs10096777-A	0.56	4E-14	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
665	chr8	10519036	10519037	rs73200708	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	8p23.1	NR	rs73200708-T	NR	5E-10		0.0327	[0.023-0.043] unit decrease	Affymetrix [9000000] (imputed)	N
665	chr8	10520912	10520913	rs13269921	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	8p23.1	NR	rs13269921-T	NR	4E-9		0.0268	[0.018-0.036] unit increase	Affymetrix [9000000] (imputed)	N
665	chr8	10521889	10521890	rs4841411	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large HDL	115,082 European ancestry individuals	NA	8p23.1		rs4841411-C	0.573225	4E-10		0.0235569	[0.016-0.031] unit decrease	NR [11722792] (imputed)	N
665	chr8	10521889	10521890	rs4841411	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large HDL particles	115,082 European ancestry individuals	NA	8p23.1		rs4841411-C	0.573225	5E-8		0.0206007	[0.013-0.028] unit decrease	NR [11722792] (imputed)	N
665	chr8	10521889	10521890	rs4841411	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	RP1L1	rs4841411-G	NR	3E-10		0.0199499	[0.014-0.026] unit decrease	Affymetrix [323858] (imputed)	N
665	chr8	10521889	10521890	rs4841411	32589924	Bi W	2020-06-23	Am J Hum Genet	A Fast and Accurate Method for Genome-Wide Time-to-Event Data Analysis and Its Application to UK Biobank.	Osteoarthrosis (time to event)	29,071 British ancestry cases, 253,800 British ancestry controls	NA	8p23.1	RP1L1, MIR4286	rs4841411-?	NR	5E-8				NR [~ 24000000] (imputed)	N
665	chr8	10521889	10521890	rs4841411	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	MIR4286	rs4841411-C	NR	7E-12		0.01197	[0.0086-0.0154] unit decrease	Affymetrix [18485882] (imputed)	N
665	chr8	10521889	10521890	rs4841411	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	8p23.1	NR	rs4841411-G	0.429623134500431	2E-22		0.018416768	[0.015-0.022] unit decrease	NR [NR]	N
665	chr8	10526185	10526186	rs58065122	29769521	Ramirez J	2018-05-16	Nat Commun	Thirty loci identified for heart rate response to exercise and recovery implicate autonomic nervous system.	Heart rate response to exercise	up to 35,455 European ancestry females, up to 31,802 European ancestry males	NA	8p23.1	RP1L1	rs58065122-G	0.582	4E-10		0.385	[0.26-0.51] bpm decrease	Affymetrix [~ 7800000] (imputed)	N
665	chr8	10535376	10535377	rs7011192	26079190	Galfalvy H	2015-06-16	Am J Med Genet B Neuropsychiatr Genet	A genome-wide association study of suicidal behavior.	Suicide	317 European ancestry cases, 1,233 European ancestry controls	NA	8p23.1	C8orf74	rs7011192-A	0.11	4E-6		2.453	[1.676-3.591]	Illumina [794207]	N
665	chr8	10547525	10547526	rs13259038	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	8p23.1	Intergenic	rs13259038-T	0.8335	8E-10	(MTAG)	0.0148	[0.01-0.02] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
665	chr8	10556108	10556109	rs11996321	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	8p23.1	NR	rs11996321-C	NR	3E-9		0.0165	[0.011-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
665	chr8	10561269	10561270	rs6601508	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	8p23.1	RP1L1	rs6601508-T	0.074089	4E-10		0.027326977	[0.019-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
665	chr8	10564741	10564741	rs34649675	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	8p23.1	NR	rs34649675-I	0.077536	2E-15		0.030063	[0.023-0.037] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
665	chr8	10568528	10568529	rs4841429	33536631	Bell S	2021-02-03	Commun Biol	A genome-wide meta-analysis yields 46 new loci associating with biomarkers of iron homeostasis.	Iron status biomarkers (ferritin levels)	246,139 European ancestry individuals	NA	8p23.1	RP1L1	rs4841429-G	0.0786	8E-21		0.06	[0.048-0.073] SD increase	Affymetrix, Illumina [40000000] (imputed)	N
665	chr8	10571490	10571491	rs4484649	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	8p23.1	SOX7	rs4484649-C	0.395398	2E-23		0.00496664	[0.0039-0.006] unit increase	Affymetrix [13995440] (imputed)	N
665	chr8	10571490	10571491	rs4484649	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	8p23.1	SOX7	rs4484649-C	0.395433	3E-27		0.0042804	[0.0035-0.0051] unit increase	Affymetrix [13995440] (imputed)	N
665	chr8	10571490	10571491	rs4484649	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	8p23.1	C8orf74, SOX7	rs4484649-C	0.4	2E-19		8.99	z-score increase	Affymetrix [4312306] (imputed)	N
665	chr8	10572791	10572792	rs76308736	29531279	Zhou S	2018-03-12	Sci Rep	Genome-wide association analysis identifies new candidate risk loci for familial intracranial aneurysm in the French-Canadian population.	Intracranial aneurysm	173 French Canadian cases, 1,772 French Canadian controls	2,617 cases, 1,416 controls	8p23.1	SOX7	rs76308736-A		2E-6		4.753	[NR] (Z score) decrease	Illumina [7614484] (imputed)	N
665	chr8	10573697	10573698	rs75731123	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large HDL	115,082 European ancestry individuals	NA	8p23.1		rs75731123-A	0.85106	1E-8		0.0314195	[0.021-0.042] unit decrease	NR [11722792] (imputed)	N
665	chr8	10573697	10573698	rs75731123	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Varicose veins	22,037 European ancestry cases, 437,665 European ancestry controls, 474 East Asian ancestry cases, 178,252 East Asian ancestry controls	NA	8p23.1		rs75731123-G	NR	9E-10		0.1003	[0.068-0.132] unit decrease	Affymetrix, Illumina [25842955] (imputed)	N
665	chr8	10573701	10573702	rs7820334	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	8p23.1		rs7820334-T	NR	2E-19		0.0218	[0.017-0.027] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
665	chr8	10573701	10573702	rs7820334	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8p23.1	NR	rs7820334-T	0.265678	8E-13				Affymetrix, Illumina [21126107] (imputed)	N
665	chr8	10574847	10574848	rs7018436	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	8p23.1	RP1L1	rs7018436-T	0.691123	3E-12		0.0150311	[0.011-0.019] unit decrease	Affymetrix [NR] (imputed)	N
665	chr8	10576774	10576775	rs10099100	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	8p23.1		rs10099100-C	NR	2E-10		0.0152	[0.01-0.02] unit increase	Affymetrix, Illumina [20536605] (imputed)	N
665	chr8	10576774	10576775	rs10099100	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	8p23.1	SOX7	rs10099100-C	0.340982	4E-13		0.0167681	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
665	chr8	10576774	10576775	rs10099100	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	8p23.1	NR	rs10099100-C	0.340524	3E-14		0.016199	[0.012-0.02] SD unit increase	Affymetrix, Illumina [50282193] (imputed)	N
665	chr8	10576774	10576775	rs10099100	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Autism spectrum disorder (MTAG)	60,817 individuals	NA	8p23.1	NR	rs10099100-?		1E-8				NR [520857]	N
665	chr8	10576774	10576775	rs10099100	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Autism spectrum disorder	46,350 individuals	NA	8p23.1	NR	rs10099100-?		1E-8				NR [9087710]	N
665	chr8	10576774	10576775	rs10099100	30804558	Grove J	2019-02-25	Nat Genet	Identification of common genetic risk variants for autism spectrum disorder.	Autism spectrum disorder	18,381 European ancestry cases, 27,969 European ancestry controls	2,119 European ancestry cases, 142,379 European ancestry controls	8p23.1	C8orf74, SOX7, PINX1	rs10099100-C	0.331	1E-8		1.08	[NR]	Illumina [9112387] (imputed)	N
665	chr8	10576774	10576775	rs10099100	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	8p23.1		rs10099100-?	NR	1E-12				NR [~ 8900000] (imputed)	N
665	chr8	10577388	10577389	rs4130764	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	SOX7	rs4130764-T	NR	2E-8		0.0179346	[0.012-0.024] unit decrease	Affymetrix [321114] (imputed)	N
665	chr8	10577388	10577389	rs4130764	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	SOX7	rs4130764-T	NR	8E-10		0.010656	[0.0073-0.0141] unit increase	Affymetrix [18485882] (imputed)	N
665	chr8	10581881	10581882	rs11250064	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	SOX7	rs11250064-A	NR	2E-8		0.0189547	[0.012-0.026] unit decrease	Affymetrix [127266] (imputed)	N
665	chr8	10584287	10584288	rs10100333	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	8p23.1		rs10100333-T	NR	1E-13		0.0388	[0.029-0.049] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
665	chr8	10585595	10585596	rs6601512	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium VLDL	115,082 European ancestry individuals	NA	8p23.1		rs6601512-G	0.396037	1E-17		0.0353447	[0.027-0.043] unit decrease	NR [11722792] (imputed)	N
665	chr8	10585595	10585596	rs6601512	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large VLDL	115,082 European ancestry individuals	NA	8p23.1		rs6601512-G	0.396037	2E-18		0.0358827	[0.028-0.044] unit decrease	NR [11722792] (imputed)	N
665	chr8	10585595	10585596	rs6601512	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium VLDL	115,082 European ancestry individuals	NA	8p23.1		rs6601512-G	0.396037	4E-9		0.0247958	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
665	chr8	10585595	10585596	rs6601512	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large VLDL	115,082 European ancestry individuals	NA	8p23.1		rs6601512-G	0.396037	2E-16		0.0337282	[0.026-0.042] unit decrease	NR [11722792] (imputed)	N
665	chr8	10585595	10585596	rs6601512	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	8p23.1		rs6601512-G	0.396037	5E-23		0.0420283	[0.034-0.05] unit increase	NR [11722792] (imputed)	N
665	chr8	10585595	10585596	rs6601512	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	8p23.1		rs6601512-G	0.396037	1E-14		0.0316276	[0.024-0.04] unit decrease	NR [11722792] (imputed)	N
665	chr8	10585595	10585596	rs6601512	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	8p23.1		rs6601512-G	0.396037	2E-19		0.0368512	[0.029-0.045] unit decrease	NR [11722792] (imputed)	N
665	chr8	10585595	10585596	rs6601512	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	8p23.1		rs6601512-G	0.396037	3E-24		0.0431898	[0.035-0.052] unit decrease	NR [11722792] (imputed)	N
665	chr8	10585595	10585596	rs6601512	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	8p23.1		rs6601512-G	0.396037	2E-9		0.0254973	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
665	chr8	10585595	10585596	rs6601512	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large VLDL	115,082 European ancestry individuals	NA	8p23.1		rs6601512-G	0.396037	5E-10		0.0260956	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
665	chr8	10585595	10585596	rs6601512	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large VLDL	115,082 European ancestry individuals	NA	8p23.1		rs6601512-G	0.396037	4E-10		0.0262212	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
665	chr8	10585595	10585596	rs6601512	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	8p23.1		rs6601512-G	0.396037	9E-18		0.0352177	[0.027-0.043] unit decrease	NR [11722792] (imputed)	N
665	chr8	10585595	10585596	rs6601512	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	8p23.1		rs6601512-G	0.396037	2E-12		0.0293103	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
665	chr8	10585595	10585596	rs6601512	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	8p23.1		rs6601512-G	0.396037	2E-12		0.0293432	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
665	chr8	10585595	10585596	rs6601512	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	8p23.1		rs6601512-G	0.396037	8E-19		0.0362769	[0.028-0.044] unit decrease	NR [11722792] (imputed)	N
665	chr8	10585595	10585596	rs6601512	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for VLDL particles	115,082 European ancestry individuals	NA	8p23.1		rs6601512-G	0.396037	2E-25		0.0413228	[0.034-0.049] unit decrease	NR [11722792] (imputed)	N
665	chr8	10587007	10587008	rs6995692	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	8p23.1	SOX7	rs6995692-C	0.5659	3E-9		0.01412887	[0.0095-0.0188] unit decrease	Affymetrix [11515109] (imputed)	N
665	chr8	10587007	10587008	rs6995692	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	8p23.1	SOX7, PINX1	rs6995692-?	NR	3E-16	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
665	chr8	10587007	10587008	rs6995692	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	8p23.1	SOX7, PINX1	rs6995692-?	NR	2E-13				Affymetrix, Illumina [18800000] (imputed)	N
665	chr8	10587007	10587008	rs6995692	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	8p23.1	SOX7, PINX1	rs6995692-?	NR	1E-15				Affymetrix, Illumina [18800000] (imputed)	N
665	chr8	10587007	10587008	rs6995692	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	8p23.1	SOX7, PINX1	rs6995692-?		4E-19	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
665	chr8	10587007	10587008	rs6995692	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	8p23.1	SOX7, PINX1	rs6995692-?	NR	4E-10	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
665	chr8	10587007	10587008	rs6995692	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	8p23.1	SOX7, PINX1	rs6995692-?	NR	3E-6				Affymetrix, Illumina [18800000] (imputed)	N
665	chr8	10587007	10587008	rs6995692	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	8p23.1	SOX7, PINX1	rs6995692-?	NR	2E-8				Affymetrix, Illumina [18800000] (imputed)	N
665	chr8	10587007	10587008	rs6995692	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	8p23.1	SOX7, PINX1	rs6995692-?	NR	1E-12	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
665	chr8	10588799	10588800	rs79674288	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 22)	2,187 European ancestry individuals	NA	8p23.1	NR	rs79674288-T	0.01239	1E-6		0.6657	[0.42-0.91] unit decrease	Illumina [10677593] (imputed)	N
665	chr8	10591800	10591801	rs6988325	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	8p23.1	NR	rs6988325-A	NR	1E-16		0.0227	[0.017-0.028] unit increase	Affymetrix [9000000] (imputed)	N
665	chr8	10591800	10591801	rs6988325	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	8p23.1	NR	rs6988325-A	NR	3E-26		0.0304	[0.025-0.036] unit decrease	Affymetrix [9000000] (imputed)	N
665	chr8	10591800	10591801	rs6988325	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	8p23.1	NR	rs6988325-A	NR	2E-19		0.0246	[0.019-0.03] unit decrease	Affymetrix [9000000] (imputed)	N
665	chr8	10591800	10591801	rs6988325	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	8p23.1	NR	rs6988325-A	NR	6E-20		0.0262	[0.021-0.032] unit decrease	Affymetrix [9000000] (imputed)	N
665	chr8	10591800	10591801	rs6988325	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	8p23.1	NR	rs6988325-A	NR	2E-10		0.0175	[0.012-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
665	chr8	10591800	10591801	rs6988325	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	8p23.1	NR	rs6988325-A	NR	2E-13		0.0202	[0.015-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
665	chr8	10591800	10591801	rs6988325	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	8p23.1	NR	rs6988325-A	NR	2E-9		0.0165	[0.011-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
665	chr8	10594473	10594474	rs4841436	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	8p23.1	SOX7, PINX1	rs4841436-C	0.4	2E-20		9.26	z-score increase	Affymetrix [4314223] (imputed)	N
665	chr8	10594473	10594474	rs4841436	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	8p23.1		rs4841436-?	NR	3E-8				NR [~ 8900000] (imputed)	N
665	chr8	10598343	10598344	rs1986868	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	8p23.1	SOX7	rs1986868-A	0.716668	6E-11		0.0142938	[0.01-0.019] unit decrease	Affymetrix [NR] (imputed)	N
665	chr8	10606223	10606223	rs200482500	30510157	Franceschini N	2018-12-03	Nat Commun	GWAS and colocalization analyses implicate carotid intima-media thickness and carotid plaque loci in cardiovascular outcomes.	Carotid intima media thickness	Up to 71,128 European ancestry individuals	NA	8p23.1	PINX1	rs200482500-?	0.52	7E-12		0.0056	[0.004-0.0072] unit increase	Affymetrix, Illumina [9574088] (imputed)	N
665	chr8	10606420	10606421	rs6997799	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	8p23.1	NR	rs6997799-C	0.23446900000000004	6E-13		0.0235558	[0.017-0.03] unit increase	Affymetrix [16580851] (imputed)	N
665	chr8	10606671	10606672	rs79220982	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small LDL	115,082 European ancestry individuals	NA	8p23.1		rs79220982-T	0.865949	3E-14		0.0449563	[0.033-0.057] unit decrease	NR [11722792] (imputed)	N
665	chr8	10606671	10606672	rs79220982	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	8p23.1		rs79220982-T	0.865949	2E-11		0.0410053	[0.029-0.053] unit increase	NR [11722792] (imputed)	N
665	chr8	10607399	10607400	rs9650657	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	8p23.1	intergenic	rs9650657-T	0.57601	2E-23		9.986	z score increase	Illumina [18485882] (imputed)	N
665	chr8	10607905	10607906	rs57076989	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	8p23.1		rs57076989-C	0.791043	1E-8		0.0291911	[0.019-0.039] unit increase	NR [11722792] (imputed)	N
665	chr8	10609954	10609955	rs13276026	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	ENSG00000248896	rs13276026-G	NR	4E-12		0.012059	[0.0087-0.0155] unit increase	Affymetrix [18485882] (imputed)	N
665	chr8	10609954	10609955	rs13276026	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption interaction (2df test)	63,608 European ancestry drinkers, 10,193 African American or Afro-Caribbean heavy drinkers,  2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,494 European ancestry non-drinkers, 11,224 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,002 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,452 Hispanic drinkers, 43,316 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,945 Asian ancestry non-drinkers, 6,925 Hispanic non-drinkers	8p23.1	LOC102723313, PINX1	rs13276026-A	0.55	4E-23	(EA, Hispanic)			Affymetrix, Illumina [up to 39321347] (imputed)	N
665	chr8	10609954	10609955	rs13276026	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption interaction (2df test)	91,110 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	237,996 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,315 European ancestry non-drinkers, 2,761 African ancestry non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	8p23.1	LOC102723313, PINX1	rs13276026-A	0.55	5E-9	(EA, Hispanic)			Affymetrix, Illumina [up to 39321347] (imputed)	N
665	chr8	10611881	10611882	rs7014285	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8p23.1	SOX7, CTD-2135J3.3	rs7014285-A	NR	3E-9		0.0194096	[0.013-0.026] unit increase	Affymetrix [321114] (imputed)	N
665	chr8	10611881	10611882	rs7014285	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	8p23.1	SOX7, CTD-2135J3.3	rs7014285-A	NR	6E-9		0.019085	[0.013-0.026] unit increase	Affymetrix [321169] (imputed)	N
665	chr8	10612924	10612925	rs4840514	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	8p23.1	SOX7, CTD-2135J3.3	rs4840514-A	0.311671	3E-15		0.019189822	[0.014-0.024] unit increase	Affymetrix [93095623] (imputed)	N
665	chr8	10612924	10612925	rs4840514	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	8p23.1	SOX7, CTD-2135J3.3	rs4840514-A	0.311696	5E-15		0.018991182	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
665	chr8	10613298	10613299	rs2116093	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	8p23.1	BC043573	rs2116093-C	0.4303	3E-8		5.527	[NR] z score increase	Affymetrix, Illumina [~ 11000000] (imputed)	N
666	chr8	10618175	10618176	rs919555	35132056	Mitchell BL	2022-02-07	Nat Commun	Genome-wide association meta-analysis identifies 29 new acne susceptibility loci.	acne vulgaris	20,165 European ancestry cases, 595,231 European ancestry controls	NA	8p23.1	NR	rs919555-C	0.5352	2E-8		1.07	[1.04-1.09]	Affymetrix, Illumina [7072771] (imputed)	N
666	chr8	10623239	10623240	rs17711777	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	8p23.1	NR	rs17711777-C	NR	8E-16		0.0375	[0.028-0.047] unit increase	Affymetrix [9000000] (imputed)	N
666	chr8	10623239	10623240	rs17711777	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	PINX1	rs17711777-T	NR	5E-8		0.0092709	[0.0059-0.0126] unit decrease	Affymetrix [18485882] (imputed)	N
666	chr8	10623632	10623633	rs891556	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls	NA	8p23.1	PINX1	rs891556-G	0.397703	5E-10		0.051189438	[0.035-0.067] unit increase	Affymetrix [7288503] (imputed)	N
666	chr8	10623968	10623969	rs2409669	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	8p23.1		rs2409669-A	0.393494	3E-11		0.0280872	[0.02-0.036] unit increase	NR [11722792] (imputed)	N
666	chr8	10625245	10625246	rs13271456	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	8p23.1	NR	rs13271456-?	NR	3E-9	(AA)	1.3337	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
666	chr8	10627310	10627311	rs73200740	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	8p23.1	NR	rs73200740-A	0.235927	2E-9		0.00921089	[0.0062-0.0122] unit increase	Affymetrix [16578495] (imputed)	N
666	chr8	10630567	10630568	rs28570522	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	Anxiety/tension (special factor of neuroticism)	270,059 British ancestry individuals	NA	8p23.1	SOX7, PINX1	rs28570522-A	NR	4E-8		0.0083839	[0.0054-0.0114] unit increase	Affymetrix [18485882] (imputed)	N
666	chr8	10630567	10630568	rs28570522	30542056	Petridis C	2018-12-12	Nat Commun	Genome-wide meta-analysis implicates mediators of hair follicle development and morphogenesis in risk for severe acne.	Acne (severe)	5,602 European ancestry cases, 21,120 European ancestry controls	NA	8p23.1	Intergenic	rs28570522-A	0.37	1E-9		1.14	[1.10-1.20]	Illumina [up to 7441713] (imputed)	N
666	chr8	10633158	10633159	rs10100265	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	8p23.1	SGK223, CLDN23, MFHAS1, ERI1, PPP1R3B, TNKS, MSRA, PRSS55, RP1L1, SOX7, XKR6, MTMR9, FAM167A, BLK, GATA4, FDFT1, CTSB, DEFB136, DEFB135, DEFB134	rs10100265-?		1E-24				Affymetrix, Illumina [NR] (imputed)	N
666	chr8	10633158	10633159	rs10100265	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	8p23.1	PINX1	rs10100265-A	0.389510131879901	6E-10		0.0491	[0.034-0.065] unit increase	NR [5035015] (imputed)	N
666	chr8	10635296	10635297	rs2116095	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8p23.1	SOX7, PINX1	rs2116095-T	NR	3E-10		0.0182131	[0.013-0.024] unit decrease	Affymetrix [321114] (imputed)	N
666	chr8	10635296	10635297	rs2116095	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	8p23.1	SOX7, PINX1	rs2116095-T	NR	8E-9		0.0167813	[0.011-0.022] unit decrease	Affymetrix [321169] (imputed)	N
666	chr8	10638332	10638333	rs1115866	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	8p23.1		rs1115866-T	NR	4E-9		0.011	[0.0073-0.0147] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
666	chr8	10640064	10640065	rs1821002	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Systolic blood pressure	140,882 European ancestry individuals	190,318 European ancestry individuals	8p23.1	BLK, GATA4	rs1821002-G	0.595473517	4E-19		0.4223	[0.33-0.52] unit decrease	Affymetrix [~ 9800000] (imputed)	N
666	chr8	10641151	10641152	rs10095737	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	8p23.1	SOX7, PINX1	rs10095737-A	NR	4E-8		0.0187136	[0.012-0.025] unit increase	Affymetrix [319769] (imputed)	N
666	chr8	10641151	10641152	rs10095737	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	8p23.1	SOX7, PINX1	rs10095737-A	NR	2E-8		0.0190525	[0.012-0.026] unit increase	Affymetrix [319769] (imputed)	N
666	chr8	10641151	10641152	rs10095737	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8p23.1	SOX7, PINX1	rs10095737-A	NR	3E-10		0.0216563	[0.015-0.028] unit increase	Affymetrix [321114] (imputed)	N
666	chr8	10641151	10641152	rs10095737	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	8p23.1	SOX7, PINX1	rs10095737-A	NR	7E-10		0.0211729	[0.014-0.028] unit increase	Affymetrix [321169] (imputed)	N
666	chr8	10641964	10641965	rs7014168	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	8p23.1	NR	rs7014168-A	0.2239	1E-12		0.0148	[0.011-0.019] unit increase	NR [~ 27400000] (imputed)	N
666	chr8	10643163	10643164	rs9657541	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	8p23.1	SOX7	rs9657541-C	0.795918	2E-13		0.0173743	[0.013-0.022] unit increase	Affymetrix [NR] (imputed)	N
666	chr8	10643163	10643164	rs9657541	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	8p23.1	PINX1	rs9657541-T	0.1885	1E-19		0.0305	[0.024-0.037] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
666	chr8	10644100	10644101	rs7821812	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	8p23.1		rs7821812-C	NR	1E-28		0.0315	[0.026-0.037] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
666	chr8	10644100	10644101	rs7821812	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	8p23.1	PINX1, SOX7	rs7821812-?	NR	4E-28		0.0354	[0.03-0.041] unit increase	Affymetrix [5701386] (imputed)	N
666	chr8	10647043	10647044	rs28588745	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	8p23.1		rs28588745-T	NR	1E-11		0.0199	[0.014-0.026] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
666	chr8	10647043	10647044	rs28588745	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	8p23.1	PINX1, SOX7	rs28588745-T	0.205772	7E-19		0.024370665	[0.019-0.03] unit increase	Affymetrix [93095623] (imputed)	N
666	chr8	10647043	10647044	rs28588745	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8p23.1	NR	rs28588745-T	0.176214	2E-19				Affymetrix, Illumina [23472807] (imputed)	N
666	chr8	10647043	10647044	rs28588745	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	8p23.1	NR	rs28588745-T	0.205718	1E-21		0.02245	[0.018-0.027] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
666	chr8	10647822	10647823	rs11250076	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	SOX7, PINX1	rs11250076-A	NR	4E-11		0.0208912	[0.015-0.027] unit decrease	Affymetrix [323858] (imputed)	N
666	chr8	10647822	10647823	rs11250076	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	SOX7, PINX1	rs11250076-A	NR	4E-12		0.0219111	[0.016-0.028] unit decrease	Affymetrix [127266] (imputed)	N
666	chr8	10647822	10647823	rs11250076	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	8p23.1	SOX7, PINX1	rs11250076-A	NR	1E-12		0.0223416	[0.016-0.028] unit decrease	Affymetrix [323858] (imputed)	N
666	chr8	10647822	10647823	rs11250076	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	8p23.1	LOC102723313	rs11250076-A	0.422382	2E-82		0.0044644	[0.004-0.0049] unit increase	Affymetrix [13995440] (imputed)	N
666	chr8	10647822	10647823	rs11250076	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	8p23.1	NR	rs11250076-?	NR	6E-6		0.124445	[0.07-0.179] unit decrease	NR [13958389] (imputed)	N
666	chr8	10647822	10647823	rs11250076	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	8p23.1	PINX1, SOX7	rs11250076-G	0.576818	3E-29		0.02513889	[0.021-0.03] unit increase	Affymetrix [93095623] (imputed)	N
666	chr8	10647822	10647823	rs11250076	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8p23.1	NR	rs11250076-G	0.479336	5E-29				Affymetrix, Illumina [24649327] (imputed)	N
666	chr8	10647822	10647823	rs11250076	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (father's age at death or father's attained age)	up to 699,000 European ancestry individuals	NA	8p23.1	NR	rs11250076-G		1E-6				Illumina [458865]	N
666	chr8	10649766	10649767	rs752446	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	8p23.1	SOX7, PINX1	rs752446-A	NR	2E-9		0.0177526	[0.012-0.024] unit increase	Affymetrix [321169] (imputed)	N
666	chr8	10655329	10655330	rs6983956	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SPINK9	5,368 Icelandic ancestry individuals	NA	8p23.1		rs6983956-C	0.1415	4E-13		0.200639	[0.15-0.25] unit decrease	Illumina [7506463] (imputed)	N
666	chr8	10663119	10663120	rs11998606	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	8p23.1		rs11998606-C	0.597889	2E-16		0.0331512	[0.025-0.041] unit decrease	NR [11722792] (imputed)	N
666	chr8	10663119	10663120	rs11998606	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	8p23.1		rs11998606-C	0.597891	2E-10		0.0262481	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
666	chr8	10663119	10663120	rs11998606	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	8p23.1		rs11998606-C	0.597891	2E-12		0.0284712	[0.021-0.036] unit decrease	NR [11722792] (imputed)	N
666	chr8	10663119	10663120	rs11998606	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large VLDL	115,082 European ancestry individuals	NA	8p23.1		rs11998606-C	0.597891	1E-18		0.0362066	[0.028-0.044] unit decrease	NR [11722792] (imputed)	N
666	chr8	10663119	10663120	rs11998606	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	8p23.1		rs11998606-C	0.597891	4E-18		0.0360937	[0.028-0.044] unit decrease	NR [11722792] (imputed)	N
666	chr8	10663119	10663120	rs11998606	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in VLDL	115,082 European ancestry individuals	NA	8p23.1		rs11998606-C	0.597891	2E-18		0.0362861	[0.028-0.044] unit decrease	NR [11722792] (imputed)	N
666	chr8	10663119	10663120	rs11998606	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total triglycerides levels	115,082 European ancestry individuals	NA	8p23.1		rs11998606-C	0.597891	3E-17		0.0350931	[0.027-0.043] unit decrease	NR [11722792] (imputed)	N
666	chr8	10663119	10663120	rs11998606	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large VLDL	115,082 European ancestry individuals	NA	8p23.1		rs11998606-C	0.597891	7E-17		0.0345379	[0.026-0.043] unit decrease	NR [11722792] (imputed)	N
666	chr8	10663119	10663120	rs11998606	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small VLDL	115,082 European ancestry individuals	NA	8p23.1		rs11998606-C	0.597891	3E-8		0.0235978	[0.015-0.032] unit decrease	NR [11722792] (imputed)	N
666	chr8	10663119	10663120	rs11998606	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	8p23.1		rs11998606-C	0.597891	5E-19		0.0369287	[0.029-0.045] unit decrease	NR [11722792] (imputed)	N
666	chr8	10663119	10663120	rs11998606	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in VLDL	115,082 European ancestry individuals	NA	8p23.1		rs11998606-C	0.597891	6E-13		0.030332	[0.022-0.039] unit decrease	NR [11722792] (imputed)	N
666	chr8	10663119	10663120	rs11998606	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	8p23.1		rs11998606-C	0.597906	2E-17		0.0338012	[0.026-0.042] unit decrease	NR [11722792] (imputed)	N
666	chr8	10663119	10663120	rs11998606	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	8p23.1		rs11998606-C	0.597906	2E-9		0.0246567	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
666	chr8	10663119	10663120	rs11998606	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large VLDL	115,082 European ancestry individuals	NA	8p23.1		rs11998606-C	0.597891	7E-16		0.0335134	[0.025-0.042] unit decrease	NR [11722792] (imputed)	N
666	chr8	10663119	10663120	rs11998606	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large VLDL	115,082 European ancestry individuals	NA	8p23.1		rs11998606-C	0.597891	2E-15		0.0329643	[0.025-0.041] unit decrease	NR [11722792] (imputed)	N
666	chr8	10663119	10663120	rs11998606	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	8p23.1		rs11998606-C	0.597891	2E-19		0.0372258	[0.029-0.045] unit decrease	NR [11722792] (imputed)	N
666	chr8	10663119	10663120	rs11998606	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in VLDL	115,082 European ancestry individuals	NA	8p23.1		rs11998606-C	0.597891	1E-9		0.0259027	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
666	chr8	10663119	10663120	rs11998606	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	8p23.1		rs11998606-C	0.597891	3E-15		0.0328795	[0.025-0.041] unit decrease	NR [11722792] (imputed)	N
666	chr8	10663119	10663120	rs11998606	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large VLDL particles	115,082 European ancestry individuals	NA	8p23.1		rs11998606-C	0.597891	1E-16		0.0341477	[0.026-0.042] unit decrease	NR [11722792] (imputed)	N
666	chr8	10663119	10663120	rs11998606	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small VLDL particles	115,082 European ancestry individuals	NA	8p23.1		rs11998606-C	0.597891	6E-9		0.0246037	[0.016-0.033] unit decrease	NR [11722792] (imputed)	N
666	chr8	10663119	10663120	rs11998606	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large VLDL particles	115,082 European ancestry individuals	NA	8p23.1		rs11998606-C	0.597891	4E-16		0.0337489	[0.026-0.042] unit decrease	NR [11722792] (imputed)	N
666	chr8	10663119	10663120	rs11998606	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of chylomicrons and extremely large VLDL particles	115,082 European ancestry individuals	NA	8p23.1		rs11998606-C	0.597891	1E-18		0.0364994	[0.028-0.045] unit decrease	NR [11722792] (imputed)	N
666	chr8	10663119	10663120	rs11998606	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	8p23.1		rs11998606-C	0.597891	2E-8		0.0231059	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
666	chr8	10663159	10663160	rs78771333	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8p23.1	NR	rs78771333-T	0.426333	6E-14				Affymetrix, Illumina [24246363] (imputed)	N
666	chr8	10665068	10665069	rs4551304	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption interaction (2df test)	91,110 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	237,996 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,315 European ancestry non-drinkers, 2,761 African ancestry non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	8p23.1	PINX1	rs4551304-A	0.4	2E-7	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
666	chr8	10665068	10665069	rs4551304	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption interaction (2df test)	63,607 European ancestry drinkers, 10,193 African American or Afro-Caribbean drinkers, 2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,492 European ancestry non-drinkers, 11,223 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,058 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	8p23.1	PINX1	rs4551304-A	0.4001	3E-13	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
666	chr8	10665068	10665069	rs4551304	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption interaction (2df test)	63,607 European ancestry drinkers, 10,193 African American or Afro-Caribbean drinkers, 2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,492 European ancestry non-drinkers, 11,223 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,058 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	8p23.1	PINX1	rs4551304-A	0.4	2E-14	(EA, Hispanic)			Affymetrix, Illumina [up to 39321347] (imputed)	N
666	chr8	10665443	10665444	rs6601527	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	8p23.1		rs6601527-A	NR	4E-13		0.0149	[0.011-0.019] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
666	chr8	10665443	10665444	rs6601527	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	8p23.1	PINX1	rs6601527-C	0.41	9E-58		16.0	z-score increase	Affymetrix [4311822] (imputed)	N
666	chr8	10665443	10665444	rs6601527	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8p23.1	NR	rs6601527-A	0.542208	1E-14				Affymetrix, Illumina [20825802] (imputed)	N
666	chr8	10666173	10666174	rs2898245	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	8p23.1	Intergenic	rs2898245-G	0.863	5E-10		0.0176	[0.012-0.023] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
666	chr8	10668633	10668634	rs12676417	35245370	Roselli C	2022-03-04	Eur Heart J	Genome-wide association study reveals novel genetic loci: a new polygenic risk score for mitral valve prolapse.	Mitral valve prolapse after mitral valve surgery	1,903 European ancestry cases, 428,916 European ancestry controls	NA	8p23.1		rs12676417-G	0.6	2E-8		1.24		NR [NR] (imputed)	N
666	chr8	10669463	10669464	rs75946928	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	8p23.1	PINX1	rs75946928-A	0.175	3E-8		0.0086	[0.0055-0.0117] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
666	chr8	10671259	10671260	rs6995541	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Triglyceride levels	28,183 East Asian ancestry individuals, 177,861 European ancestry individuals	10,857 Chinese ancestry individuals	8p23.1	PINX1	rs6995541-A	0.678	3E-12	(Trans-ethnic initial)	0.0265	[0.019-0.034] unit decrease (EA Beta values)	Affymetrix, Illumina [up to 1900000] (imputed)	N
666	chr8	10671271	10671272	rs6601530	21909108	Bis JC	2011-09-11	Nat Genet	Meta-analysis of genome-wide association studies from the CHARGE consortium identifies common variants associated with carotid intima media thickness and plaque.	Carotid intima media thickness	Up to 31,211 European ancestry individuals	10,553 European ancestry individuals, 687 Orcadian individuals	8p23.1	PINX1	rs6601530-G	0.45	2E-8	(cIMT)	0.0078	[0.01-0.01] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
666	chr8	10673007	10673008	rs11250079	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	8p23.1	SOX7, PINX1	rs11250079-C	0.3052	3E-9		0.02327049	[0.016-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
666	chr8	10675187	10675188	rs7814757	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption interaction (2df test)	63,608 European ancestry drinkers, 10,193 African American or Afro-Caribbean heavy drinkers,  2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,494 European ancestry non-drinkers, 11,224 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,002 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,452 Hispanic drinkers, 43,316 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,945 Asian ancestry non-drinkers, 6,925 Hispanic non-drinkers	8p23.1	PINX1	rs7814757-T	0.4	3E-22	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
666	chr8	10679086	10679087	rs2409652	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	8p23.1	PINX1	rs2409652-T	0.2566	2E-9		0.013383289	[0.009-0.0177] unit decrease	Illumina [9339358] (imputed)	N
666	chr8	10683928	10683929	rs11776767	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Triglycerides	94,595 European ancestry individuals	93,982 European ancestry individuals	8p23.1	PINX1	rs11776767-C	0.37	3E-11		0.022	[NR] mg/dL increase	NR [NR] (imputed)	N
666	chr8	10683928	10683929	rs11776767	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	Triglycerides	96,598 European ancestry individuals	NA	8p23.1	XKR6, PINX1	rs11776767-C	0.37	1E-8		2.01	[1.25-2.77] mg/dL increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
666	chr8	10686536	10686537	rs35660623	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	8p23.1	NR	rs35660623-?	NR	5E-6	(AA)	0.5385	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
666	chr8	10691088	10691088	rs112120919	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very small VLDL	115,082 European ancestry individuals	NA	8p23.1		rs112120919-A	0.823954	2E-11		0.0356597	[0.025-0.046] unit decrease	NR [11722792] (imputed)	N
666	chr8	10691088	10691088	rs112120919	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	8p23.1		rs112120919-A	0.823954	6E-18		0.0451544	[0.035-0.055] unit increase	NR [11722792] (imputed)	N
666	chr8	10691548	10691549	rs11986935	27723756	Wang J	2016-10-10	Nat Genet	Genome-wide association analysis identifies variation in vitamin D receptor and other host factors influencing the gut microbiota.	Gut microbiota (beta diversity)	1,812 European ancestry individuals	371 European ancestry individuals	8p23.1	SOX7, PINX1	rs11986935-?	NR	5E-8		0.97	NR percent increase	Affymetrix, Illumina [6344846] (imputed)	N
666	chr8	10693112	10693113	rs4840519	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	SOX7, PINX1	rs4840519-T	NR	1E-9		0.010548	[0.0071-0.014] unit increase	Affymetrix [18485882] (imputed)	N
666	chr8	10693689	10693690	rs76785757	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large HDL	115,082 European ancestry individuals	NA	8p23.1		rs76785757-A	0.863579	2E-13		0.043026	[0.032-0.055] unit decrease	NR [11722792] (imputed)	N
666	chr8	10693689	10693690	rs76785757	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium LDL	115,082 European ancestry individuals	NA	8p23.1		rs76785757-A	0.863579	9E-11		0.0381556	[0.027-0.05] unit decrease	NR [11722792] (imputed)	N
666	chr8	10693689	10693690	rs76785757	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in LDL	115,082 European ancestry individuals	NA	8p23.1		rs76785757-A	0.863579	4E-9		0.0346152	[0.023-0.046] unit decrease	NR [11722792] (imputed)	N
666	chr8	10693689	10693690	rs76785757	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	8p23.1		rs76785757-A	0.863579	2E-9		0.0355267	[0.024-0.047] unit increase	NR [11722792] (imputed)	N
666	chr8	10705359	10705360	rs6989160	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	8p23.1	NR	rs6989160-A		4E-10		0.07	[0.05-0.09] unit increase	NR [NR]	N
666	chr8	10706410	10706411	rs1991651	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	8p23.1	LOC101929229	rs1991651-C	0.382382	2E-17		0.0181569	[0.014-0.022] unit decrease	NR [16516521] (imputed)	N
666	chr8	10706410	10706411	rs1991651	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8p23.1	NR	rs1991651-G	0.56731	1E-29				Affymetrix, Illumina [23114412] (imputed)	N
666	chr8	10706410	10706411	rs1991651	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	8p23.1	RP11-177H2.2	rs1991651-G	0.6178	2E-12		0.02610339	[0.019-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
666	chr8	10706410	10706411	rs1991651	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	8p23.1	RP11-177H2.2	rs1991651-G	0.6178	3E-13		0.02694832	[0.02-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
666	chr8	10706410	10706411	rs1991651	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	8p23.1	RP11-177H2.2	rs1991651-G	0.6178	4E-13		0.02675952	[0.02-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
666	chr8	10706410	10706411	rs1991651	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	8p23.1	RP11-177H2.2	rs1991651-G	0.6178	5E-13		0.02679011	[0.02-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
666	chr8	10706410	10706411	rs1991651	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	8p23.1	RP11-177H2.2	rs1991651-G	0.6178	1E-12		0.02628387	[0.019-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
666	chr8	10707270	10707271	rs13254592	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8p23.1	RP11-177H2.2	rs13254592-A	NR	2E-9		0.0175657	[0.012-0.023] unit increase	Affymetrix [321114] (imputed)	N
666	chr8	10712944	10712945	rs877116	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	8p23.1		rs877116-T	NR	6E-17		0.0194	[0.015-0.024] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
666	chr8	10712944	10712945	rs877116	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	8p23.1		rs877116-T	0.588763	9E-13		0.01616374	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
666	chr8	10712944	10712945	rs877116	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	8p23.1	NR	rs877116-T	0.588647	4E-15		0.016442	[0.012-0.021] SD unit increase	Affymetrix, Illumina [50036608] (imputed)	N
666	chr8	10726841	10726842	rs7819602	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	8p23.1		rs7819602-G	0.613118	3E-9		0.016600622	[0.011-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
666	chr8	10726841	10726842	rs7819602	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls	NA	8p23.1	MSRA	rs7819602-?	NR	1E-9		1.15	[1.10-1.20]	Illumina [at least 5000000] (imputed)	N
666	chr8	10732049	10732050	rs2163379	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	XKR6	rs2163379-A	NR	7E-13		0.0230303	[0.017-0.029] unit decrease	Affymetrix [321114] (imputed)	N
666	chr8	10732081	10732082	rs77753174	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	8p23.1		rs77753174-A	0.828761	3E-19		0.0476856	[0.037-0.058] unit decrease	NR [11722792] (imputed)	N
666	chr8	10732081	10732082	rs77753174	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	8p23.1		rs77753174-A	0.828761	2E-11		0.0352398	[0.025-0.045] unit decrease	NR [11722792] (imputed)	N
666	chr8	10732081	10732082	rs77753174	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	8p23.1		rs77753174-A	0.828761	2E-12		0.0372063	[0.027-0.048] unit decrease	NR [11722792] (imputed)	N
666	chr8	10732081	10732082	rs77753174	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	8p23.1		rs77753174-A	0.828766	2E-12		0.0373838	[0.027-0.048] unit increase	NR [11722792] (imputed)	N
666	chr8	10732081	10732082	rs77753174	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to monounsaturated fatty acids	115,006 European ancestry individuals	NA	8p23.1		rs77753174-A	0.828766	1E-16		0.0439061	[0.034-0.054] unit increase	NR [11722792] (imputed)	N
666	chr8	10732081	10732082	rs77753174	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of docosahexaenoic acid to total fatty acid levels	115,006 European ancestry individuals	NA	8p23.1		rs77753174-A	0.828766	2E-11		0.0357394	[0.025-0.046] unit increase	NR [11722792] (imputed)	N
666	chr8	10732081	10732082	rs77753174	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	8p23.1		rs77753174-A	0.828761	7E-21		0.0498678	[0.039-0.06] unit increase	NR [11722792] (imputed)	N
666	chr8	10732081	10732082	rs77753174	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	8p23.1		rs77753174-A	0.828761	7E-18		0.0451507	[0.035-0.055] unit increase	NR [11722792] (imputed)	N
666	chr8	10732081	10732082	rs77753174	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	8p23.1		rs77753174-A	0.828761	8E-13		0.0393272	[0.029-0.05] unit increase	NR [11722792] (imputed)	N
666	chr8	10732081	10732082	rs77753174	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Degree of unsaturation	115,006 European ancestry individuals	NA	8p23.1		rs77753174-A	0.828766	7E-12		0.0360285	[0.026-0.046] unit increase	NR [11722792] (imputed)	N
666	chr8	10732081	10732082	rs77753174	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	8p23.1		rs77753174-A	0.828761	6E-10		0.0336298	[0.023-0.044] unit increase	NR [11722792] (imputed)	N
666	chr8	10732546	10732547	rs10903331	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	8p23.1		rs10903331-C	0.197351	3E-11		0.0338549	[0.024-0.044] unit increase	NR [11722792] (imputed)	N
666	chr8	10732546	10732547	rs10903331	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	8p23.1		rs10903331-C	0.197351	8E-9		0.0290715	[0.019-0.039] unit increase	NR [11722792] (imputed)	N
666	chr8	10732546	10732547	rs10903331	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	8p23.1		rs10903331-C	0.197351	1E-11		0.0340641	[0.024-0.044] unit decrease	NR [11722792] (imputed)	N
666	chr8	10732904	10732905	rs1864585	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	8p23.1	NR	rs1864585-G	NR	2E-11		0.0188	[0.013-0.024] unit increase	Affymetrix [9000000] (imputed)	N
666	chr8	10732904	10732905	rs1864585	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	8p23.1	intergenic	rs1864585-G	0.7434	8E-12		0.02791705	[0.02-0.036] unit decrease	Affymetrix [~ 2500000] (imputed)	N
666	chr8	10732904	10732905	rs1864585	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	8p23.1	intergenic	rs1864585-G	0.7434	5E-13		0.02946666	[0.021-0.037] unit increase	Affymetrix [~ 2500000] (imputed)	N
666	chr8	10732969	10732970	rs11780136	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	8p23.1	XKR6	rs11780136-C	0.245	2E-8		0.0078	[0.0051-0.0105] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
666	chr8	10733715	10733716	rs4840523	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	8p23.1	XKR6	rs4840523-A	0.078	1E-8		0.0128	[0.0085-0.0171] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
666	chr8	10736551	10736552	rs755856	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	XKR6	rs755856-C	NR	2E-8		0.0180861	[0.012-0.024] unit decrease	Affymetrix [127266] (imputed)	N
666	chr8	10736551	10736552	rs755856	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	XKR6	rs755856-C	NR	4E-11		0.0211143	[0.015-0.027] unit decrease	Affymetrix [321114] (imputed)	N
666	chr8	10736551	10736552	rs755856	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	8p23.1	XKR6	rs755856-C	NR	9E-11		0.0208463	[0.015-0.027] unit decrease	Affymetrix [323858] (imputed)	N
666	chr8	10741417	10741418	rs76082254	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	8p23.1	NR	rs76082254-C	NR	3E-10		0.0277	[0.019-0.036] unit decrease	Affymetrix [9000000] (imputed)	N
666	chr8	10741853	10741854	rs76427249	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	8p23.1	NR	rs76427249-C	NR	1E-9		0.0336	[0.023-0.044] unit increase	Affymetrix [9000000] (imputed)	N
666	chr8	10743420	10743421	rs17778581	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	XKR6	rs17778581-T	NR	2E-12		0.0217089	[0.016-0.028] unit increase	Affymetrix [321114] (imputed)	N
666	chr8	10743420	10743421	rs17778581	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	8p23.1	XKR6	rs17778581-T	NR	7E-12		0.0212618	[0.015-0.027] unit increase	Affymetrix [323858] (imputed)	N
666	chr8	10743938	10743939	rs117537300	29531279	Zhou S	2018-03-12	Sci Rep	Genome-wide association analysis identifies new candidate risk loci for familial intracranial aneurysm in the French-Canadian population.	Intracranial aneurysm	173 French Canadian cases, 1,772 French Canadian controls	2,617 cases, 1,416 controls	8p23.1	XKR6	rs117537300-?		7E-7	(French Canadians)	2.4132032		Illumina [7614484] (imputed)	N
667	chr8	10758212	10758213	rs10107145	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Systolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	8p23.1	intergenic	rs10107145-G	0.528	1E-8	(EA, initial)	0.406	[0.26-0.55] unit decrease	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
667	chr8	10758212	10758213	rs10107145	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Systolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	8p23.1	intergenic	rs10107145-G	0.528	1E-17		0.361	[0.28-0.44] unit decrease	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
667	chr8	10763654	10763655	rs4326350	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	8p23.1	NR	rs4326350-G	0.493	5E-12		0.017613662	[0.013-0.023] unit decrease	NR [~ 10000000] (imputed)	N
667	chr8	10765634	10765635	rs4840525	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	XKR6	rs4840525-A	NR	1E-9		0.0190648	[0.013-0.025] unit increase	Affymetrix [323858] (imputed)	N
667	chr8	10765634	10765635	rs4840525	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	XKR6	rs4840525-A	NR	7E-11		0.0203917	[0.014-0.027] unit increase	Affymetrix [127266] (imputed)	N
667	chr8	10766027	10766028	rs6997839	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	8p23.1	NR	rs6997839-C	0.494	9E-14		0.00803718	[0.0059-0.0102] unit decrease	NR [9732723] (imputed)	N
667	chr8	10766081	10766082	rs6997997	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	8p23.1	NR	rs6997997-T	NR	2E-10		6.377	z score decrease	Affymetrix [10847151] (imputed)	N
667	chr8	10767747	10767748	rs4240671	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	8p23.1		rs4240671-G	0.509	5E-23		0.012	[0.01-0.014] unit increase	NR [NR] (imputed)	N
667	chr8	10768101	10768102	rs56009433	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	8p23.1	NR	rs56009433-T	NR	2E-10		0.0335	[0.023-0.044] unit increase	Affymetrix [9000000] (imputed)	N
667	chr8	10770254	10770255	rs7834121	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	8p23.1	NR	rs7834121-?		1E-10		0.0139595	[0.0097-0.0182] unit decrease	Affymetrix [19400418] (imputed)	N
667	chr8	10774222	10774223	rs781751875	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	8p23.1	NR	rs781751875-?	NR	7E-9				Affymetrix [~ 8270000] (imputed)	N
667	chr8	10783768	10783769	rs10086521	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	XKR6	rs10086521-T	NR	4E-11		0.01148	[0.0081-0.0149] unit increase	Affymetrix [18485882] (imputed)	N
667	chr8	10784491	10784492	rs7843470	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Processed meat consumption	335,576 European ancestry individuals	NA	8p23.1	MSRA, RP1L1, C8orf74, SOX7, XKR6, MTMR9, SLC35G5, C8orf12, FAM167A, BLK, GATA4, C8orf49, NEIL2, FDFT1, CTSB	rs7843470-?	NR	2E-15		0.0193364	[0.015-0.024] unit decrease	Affymetrix [25921788] (imputed)	N
667	chr8	10786071	10786072	rs12548184	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	8p23.1	BLK, XKR6	rs12548184-?	NR	1E-7	(Hispanic)	1.3333333	[1.2-1.47]	Illumina [at least 5000000] (imputed)	N
667	chr8	10789492	10789493	rs4841460	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	XKR6	rs4841460-C	NR	5E-12		0.012012	[0.0086-0.0154] unit increase	Affymetrix [18485882] (imputed)	N
667	chr8	10795612	10795613	rs7000772	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	8p23.1	NR	rs7000772-G	0.49679	2E-12		0.0471958	[0.034-0.061] unit decrease	Affymetrix [17914406] (imputed)	N
667	chr8	10796471	10796472	rs7005884	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	8p23.1	MAGI1	rs7005884-?		4E-14				NR [7428630] (imputed)	N
667	chr8	10797830	10797831	rs11990550	32634583	Meng Y	2020-07-04	Int J Infect Dis	Genome-wide association study identifies TPH2 variant as a novel locus for severe CV-A6-associated hand, foot, and mouth disease in Han Chinese.	CV-A6-associated hand, foot, and mouth disease (severe vs mild)	115 Han Chinese ancestry severe cases, 115 Han Chinese ancestry mild controls	NA	8p23.1	XKR6	rs11990550-?	NR	6E-6				Illumina [NR]	N
667	chr8	10801657	10801658	rs73196840	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	XKR6	rs73196840-A	NR	2E-10		0.011097	[0.0077-0.0145] unit increase	Affymetrix [18485882] (imputed)	N
667	chr8	10802145	10802146	rs12546366	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	8p23.1	XKR6	rs12546366-T	0.4529	1E-7		0.01348	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
667	chr8	10802145	10802146	rs12546366	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	8p23.1	XKR6	rs12546366-T	0.4529	8E-14	(females)	0.0212	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
667	chr8	10802145	10802146	rs12546366	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	8p23.1	XKR6	rs12546366-T	0.4529	5E-7	(males)	0.01806	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
667	chr8	10802145	10802146	rs12546366	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	8p23.1	XKR6	rs12546366-T	0.4529	3E-16		0.0196	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
667	chr8	10803724	10803725	rs73196842	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	8p23.1	NR	rs73196842-A	NR	1E-9		0.0172	[0.012-0.023] unit increase	Affymetrix [9000000] (imputed)	N
667	chr8	10803724	10803725	rs73196842	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	8p23.1	NR	rs73196842-A	NR	2E-10		0.0189	[0.013-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
667	chr8	10803724	10803725	rs73196842	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	8p23.1	NR	rs73196842-A	NR	1E-18		0.025	[0.02-0.03] unit decrease	Affymetrix [9000000] (imputed)	N
667	chr8	10803724	10803725	rs73196842	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	8p23.1	NR	rs73196842-A	NR	9E-10		0.0181	[0.012-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
667	chr8	10803724	10803725	rs73196842	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	8p23.1	NR	rs73196842-A	NR	3E-9		0.0168	[0.011-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
667	chr8	10804842	10804843	rs7000276	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	XKR6	rs7000276-G	NR	1E-10		0.011124	[0.0077-0.0145] unit increase	Affymetrix [18485882] (imputed)	N
667	chr8	10808686	10808687	rs57327348	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	8p23.1	XKR6	rs57327348-A	0.782	5E-8		1.04	[1.02-1.06]	Affymetrix, Illumina [~ 27000000] (imputed)	N
667	chr8	10809489	10809490	rs34031674	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	8p23.1		rs34031674-G	0.565315	4E-14		0.0300042	[0.022-0.038] unit increase	NR [11722792] (imputed)	N
667	chr8	10810249	10810250	rs60240827	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	XKR6	rs60240827-T	NR	2E-12		0.0220809	[0.016-0.028] unit increase	Affymetrix [323858] (imputed)	N
667	chr8	10810249	10810250	rs60240827	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	XKR6	rs60240827-T	NR	8E-14		0.0234695	[0.017-0.03] unit increase	Affymetrix [127266] (imputed)	N
667	chr8	10810450	10810451	rs10096511	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	8p23.1	NR	rs10096511-G	0.52790342716746	1E-31		0.021721173	[0.018-0.025] unit increase	NR [NR]	N
667	chr8	10811828	10811829	rs11250097	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	8p23.1	NR	rs11250097-?		4E-8	(Fornix (cres) / Stria terminalis)			NR [8955960] (imputed)	N
667	chr8	10811828	10811829	rs11250097	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	8p23.1	intergenic	rs11250097-T	0.46519999999999995	9E-31		11.532	z score decrease	Illumina [18485882] (imputed)	N
667	chr8	10813196	10813197	rs35910832	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8p23.1	XKR6	rs35910832-T	NR	4E-12		0.0198302	[0.014-0.025] unit decrease	Affymetrix [321114] (imputed)	N
667	chr8	10813196	10813197	rs35910832	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	8p23.1	XKR6	rs35910832-T	NR	5E-10		0.0177682	[0.012-0.023] unit decrease	Affymetrix [321169] (imputed)	N
667	chr8	10813473	10813474	rs6982751	24388013	Ferreira MA	2013-12-30	J Allergy Clin Immunol	Genome-wide association analysis identifies 11 risk variants associated with the asthma with hay fever phenotype.	Asthma and hay fever	6,685 European ancestry cases, 14,091 European ancestry controls	878 European ancestry cases, 2,455 European ancestry controls	8p23.1	XKR6	rs6982751-G		4E-7		1.1878	[1.12-1.25]	Illumina [up to 4972397] (imputed)	N
667	chr8	10815570	10815571	rs10109025	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	XKR6	rs10109025-G	NR	1E-8		0.0179907	[0.012-0.024] unit increase	Affymetrix [321114] (imputed)	N
667	chr8	10815570	10815571	rs10109025	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Joint mobility (Beighton score)	64,143 European ancestry individuals	NA	8p23.1	XKR6	rs10109025-?	NR	3E-9		0.068	[0.090-0.045] unit decrease	Illumina [12039492] (imputed)	N
667	chr8	10818606	10818607	rs11250098	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	8p23.1		rs11250098-A	0.478323	2E-20		0.0381478	[0.03-0.046] unit decrease	NR [11722792] (imputed)	N
667	chr8	10818606	10818607	rs11250098	26835600	Hu Y	2016-02-02	Nat Commun	GWAS of 89,283 individuals identifies genetic variants associated with self-reporting of being a morning person.	Morning vs. evening chronotype	38,937 European ancestry morning chronotype individuals, 50,346 European ancestry evening chronotype individuals	NA	8p23.1	NR	rs11250098-?	NR	4E-6				Illumina [7427422] (imputed)	N
667	chr8	10818656	10818657	rs11250099	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	8p23.1	XKR6	rs11250099-A	NR	3E-8		0.0156772	[0.01-0.021] unit decrease	Affymetrix [321016] (imputed)	N
667	chr8	10819853	10819854	rs4841465	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption interaction (2df test)	63,608 European ancestry drinkers, 10,193 African American or Afro-Caribbean heavy drinkers,  2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,494 European ancestry non-drinkers, 11,224 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,002 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,452 Hispanic drinkers, 43,316 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,945 Asian ancestry non-drinkers, 6,925 Hispanic non-drinkers	8p23.1	XKR6	rs4841465-T	0.52	1E-20	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
667	chr8	10819853	10819854	rs4841465	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption (light vs heavy) interaction (2df test)	12,758 European ancestry heavy drinkers, 1,326 African American or Afro-Caribbean heavy drinkers, 648 Asian ancestry heavy drinkers, 364 Hispanic or Latin American heavy drinkers, 43,947 European ancestry light drinkers, 8,239 African American or Afro-Caribbean light drinkers, 1,141 Asian ancestry light drinkers, 4,448 Hispanic or Latin American light drinkers	42,078 European ancestry heavy drinkers, 217 African American heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic heavy drinkers, 74,706 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	8p23.1	XKR6	rs4841465-T	0.52	1E-12	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
667	chr8	10822430	10822431	rs35792458	34753499	Hanscombe KB	2021-11-09	Genome Med	The genetic case for cardiorespiratory fitness as a clinical vital sign and the routine prescription of physical activity in healthcare.	Cardiorespiratory fitness slope	70,783 European ancestry individuals	NA	8p23.1		rs35792458-G	0.56	2E-8		0.006	[0.004-0.008] unit decrease	Affymetrix [8918919] (imputed)	N
667	chr8	10822430	10822431	rs35792458	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	XKR6	rs35792458-C	NR	3E-11		0.0209858	[0.015-0.027] unit increase	Affymetrix [323858] (imputed)	N
667	chr8	10822430	10822431	rs35792458	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	XKR6	rs35792458-C	NR	2E-12		0.0222787	[0.016-0.028] unit increase	Affymetrix [127266] (imputed)	N
667	chr8	10822430	10822431	rs35792458	29559929	Amare AT	2018-03-06	Front Psychiatry	Association of the Polygenic Scores for Personality Traits and Response to Selective Serotonin Reuptake Inhibitors in Patients with Major Depressive Disorder.	Remission after SSRI treatment in MDD or neuroticism	865 individuals with SSRI response data, 170,911 individuals with personality trait data	NA	8p23.1	XKR6	rs35792458-C	NR	1E-12				NR [NR] (imputed)	N
667	chr8	10825163	10825164	rs34959618	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	XKR6	rs34959618-C	NR	3E-11		0.0215611	[0.015-0.028] unit increase	Affymetrix [321114] (imputed)	N
667	chr8	10825163	10825164	rs34959618	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	8p23.1	XKR6	rs34959618-C	NR	9E-11		0.0210079	[0.015-0.027] unit increase	Affymetrix [323858] (imputed)	N
667	chr8	10831867	10831868	rs10096421	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	8p23.1	XKR6	rs10096421-T	0.4706	5E-12		0.002	[0.0012-0.0028] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
667	chr8	10834430	10834431	rs4078186	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	XKR6	rs4078186-A	NR	5E-9		0.010139	[0.0067-0.0135] unit increase	Affymetrix [18485882] (imputed)	N
667	chr8	10835916	10835917	rs4451267	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	XKR6	rs4451267-C	NR	6E-15		0.0243166	[0.018-0.03] unit decrease	Affymetrix [321114] (imputed)	N
667	chr8	10835916	10835917	rs4451267	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	8p23.1	XKR6	rs4451267-C	NR	3E-15		0.024622	[0.018-0.031] unit decrease	Affymetrix [323858] (imputed)	N
667	chr8	10836471	10836472	rs7010246	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking initiation (ever regular vs never regular)	up to 433,216 European ancestry individuals	NA	8p23.1	XKR6	rs7010246-A	0.365	3E-8		0.0131	[0.0085-0.0177] unit decrease	Illumina [~ 250000] (imputed)	N
667	chr8	10837335	10837336	rs79104394	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	8p23.1	NR	rs79104394-A	NR	2E-9		0.0276	[0.019-0.037] unit decrease	Affymetrix [9000000] (imputed)	N
667	chr8	10838460	10838461	rs11779675	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	8p23.1	XKR6	rs11779675-A	0.3663	1E-8		0.012821359	[0.0084-0.0172] unit decrease	Affymetrix [11514654] (imputed)	N
667	chr8	10841857	10841858	rs11783418	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	8p23.1	XKR6	rs11783418-A	0.4997	4E-11		0.002	[0.0012-0.0028] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
667	chr8	10841857	10841858	rs11783418	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	XKR6	rs11783418-G	NR	3E-15		0.01379	[0.01-0.017] unit increase	Affymetrix [18485882] (imputed)	N
667	chr8	10842658	10842659	rs9969436	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Anxiety	at least 23,606 European ancestry cases, at least 113,351 European ancestry controls	624,615 European ancestry cases, 1,310,854 European ancestry controls	8p23.1	XKR6	rs9969436-T	0.4781	5E-6		0.010446073	[0.0053-0.0156] unit decrease	NR [9417325] (imputed)	N
667	chr8	10842658	10842659	rs9969436	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption (light vs heavy) interaction (2df test)	56,705 European ancestry heavy and light drinkers, 9,725 African American or Afro-Caribbean heavy and light drinkers, 1,789 Asian ancestry heavy and light drinkers, 4,812 Hispanic or Latin American heavy and light drinkers	42,077 European ancestry heavy drinkers, 217 African American heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic ancestry heavy drinkers, 74,701 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	8p23.1	XKR6	rs9969436-T	0.4846	2E-8	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
667	chr8	10842658	10842659	rs9969436	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption (light vs heavy) interaction (2df test)	56,705 European ancestry heavy and light drinkers, 9,725 African American or Afro-Caribbean heavy and light drinkers, 1,789 Asian ancestry heavy and light drinkers, 4,812 Hispanic or Latin American heavy and light drinkers	42,077 European ancestry heavy drinkers, 217 African American heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic ancestry heavy drinkers, 74,701 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	8p23.1	XKR6	rs9969436-T	0.47	3E-9	(AA, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
667	chr8	10846044	10846045	rs11250103	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	XKR6	rs11250103-G	NR	1E-8		0.0189373	[0.012-0.025] unit increase	Affymetrix [323858] (imputed)	N
667	chr8	10846044	10846045	rs11250103	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	XKR6	rs11250103-G	NR	4E-9		0.0195258	[0.013-0.026] unit increase	Affymetrix [127266] (imputed)	N
667	chr8	10846708	10846709	rs4841468	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	XKR6	rs4841468-C	NR	6E-11		0.011342	[0.0079-0.0147] unit increase	Affymetrix [18485882] (imputed)	N
667	chr8	10848543	10848544	rs4841469	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	8p23.1	XKR6	rs4841469-G	NR	1E-8		0.0170937	[0.011-0.023] unit increase	Affymetrix [321169] (imputed)	N
667	chr8	10848724	10848725	rs4841470	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	XKR6	rs4841470-T	NR	5E-11		0.011451	[0.008-0.0149] unit increase	Affymetrix [18485882] (imputed)	N
667	chr8	10849485	10849486	rs3923921	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8p23.1	XKR6	rs3923921-C	NR	2E-8		0.018495	[0.012-0.025] unit increase	Affymetrix [321114] (imputed)	N
667	chr8	10852231	10852232	rs4841472	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycoprotein acetyls levels	115,082 European ancestry individuals	NA	8p23.1		rs4841472-T	0.634832	4E-12		0.0296649	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
667	chr8	10852255	10852256	rs4841473	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fish- and plant-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	8p23.1	XKR6	rs4841473-?	NR	4E-9	(male)	0.0245329	[0.016-0.033] unit increase	Affymetrix [25921788] (imputed)	N
667	chr8	10856473	10856474	rs10101292	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	XKR6	rs10101292-C	NR	5E-8		0.0173336	[0.011-0.024] unit increase	Affymetrix [323858] (imputed)	N
667	chr8	10856473	10856474	rs10101292	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	XKR6	rs10101292-C	NR	9E-9		0.0182135	[0.012-0.024] unit increase	Affymetrix [127266] (imputed)	N
667	chr8	10856473	10856474	rs10101292	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	8p23.1	XKR6	rs10101292-C	NR	3E-8		0.0175033	[0.011-0.024] unit increase	Affymetrix [323858] (imputed)	N
667	chr8	10865713	10865714	rs4841476	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8p23.1	XKR6	rs4841476-T	NR	4E-9		0.0174655	[0.012-0.023] unit increase	Affymetrix [321114] (imputed)	N
667	chr8	10866370	10866371	rs149776388	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (negative Marder score)	1,390 European ancestry cases	NA	8p23.1		rs149776388-C	NR	5E-7	(GLM)	6.7037	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
667	chr8	10876297	10876298	rs4370496	33742053	Wells HRR	2021-03-19	Sci Rep	Genome-wide association study suggests that variation at the RCOR1 locus is associated with tinnitus in UK Biobank.	Tinnitus	91,424 British ancestry individuals	NA	8p23.1	XKR6	rs4370496-G	0.8	6E-7		0.07	[0.043-0.097] unit decrease	Affymetrix [9740198] (imputed)	N
668	chr8	10879856	10879857	rs4076425	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	8p23.1		rs4076425-G	0.719245	9E-9		0.0257314	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
668	chr8	10879856	10879857	rs4076425	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	XKR6	rs4076425-G	NR	2E-9		0.010414	[0.007-0.0138] unit increase	Affymetrix [18485882] (imputed)	N
668	chr8	10885852	10885853	rs117119573	31220337	Carr DF	2019-06-20	Clin Pharmacol Ther	Genome-wide association study of statin-induced myopathy in patients recruited using the UK clinical practice research datalink.	Simvastatin-induced myopathy	85 European ancestry cases, 2,501 controls	NA	8p23.1	XKR6	rs117119573-?	NR	8E-6		9.07	[1.96-41.93]	Illumina [654642] (imputed)	N
668	chr8	10894452	10894453	rs73196896	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8p23.1	XKR6	rs73196896-G	NR	8E-9		0.0205137	[0.014-0.027] unit increase	Affymetrix [321114] (imputed)	N
668	chr8	10894452	10894453	rs73196896	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	8p23.1	XKR6	rs73196896-G	NR	3E-8		0.0198284	[0.013-0.027] unit increase	Affymetrix [321169] (imputed)	N
668	chr8	10900730	10900730	rs145448563	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Raw vegetable consumption	335,576 European ancestry individuals	NA	8p23.1	XKR6	rs145448563-?	NR	1E-8		0.017449	[0.011-0.023] unit increase	Affymetrix [25921788] (imputed)	N
668	chr8	10903474	10903475	rs2001433	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of monounsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	8p23.1		rs2001433-T	0.47874	1E-19		0.0359355	[0.028-0.044] unit decrease	NR [11722792] (imputed)	N
668	chr8	10907886	10907886	rs34833442	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	XKR6	rs34833442-GTA	NR	2E-8		0.0179743	[0.012-0.024] unit decrease	Affymetrix [127266] (imputed)	N
668	chr8	10909192	10909193	rs2409685	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8p23.1	XKR6	rs2409685-C	NR	2E-11		0.0193507	[0.014-0.025] unit decrease	Affymetrix [321114] (imputed)	N
668	chr8	10909192	10909193	rs2409685	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	8p23.1	XKR6	rs2409685-C	NR	2E-8		0.0174217	[0.011-0.024] unit decrease	Affymetrix [323858] (imputed)	N
668	chr8	10909935	10909936	rs4841485	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	8p23.1	XKR6	rs4841485-C	NR	2E-9		0.0172472	[0.012-0.023] unit decrease	Affymetrix [321169] (imputed)	N
668	chr8	10918392	10918393	rs11985603	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	XKR6	rs11985603-G	NR	2E-12		0.012299	[0.0089-0.0157] unit increase	Affymetrix [18485882] (imputed)	N
668	chr8	10935686	10935687	rs4262293	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	XKR6	rs4262293-T	NR	5E-9		0.010163	[0.0067-0.0136] unit increase	Affymetrix [18485882] (imputed)	N
668	chr8	10943275	10943276	rs2409691	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	8p23.1	NR	rs2409691-T	0.4786	3E-9	(Transverse Temporal)	1.6792134	[1.13-2.23] unit increase	Affymetrix, Illumina [NR]	N
668	chr8	10943275	10943276	rs2409691	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Automobile speeding propensity	404,291 European ancestry individuals	NA	8p23.1	XKR6	rs2409691-T	0.4822	9E-9		0.012960173	[0.0085-0.0174] unit decrease	Affymetrix [11514463] (imputed)	N
668	chr8	10946809	10946810	rs80344830	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	XKR6	rs80344830-A	NR	4E-8		0.0093809	[0.006-0.0127] unit increase	Affymetrix [18485882] (imputed)	N
668	chr8	10946860	10946861	rs2409694	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8p23.1	XKR6	rs2409694-G	NR	5E-10		0.0179139	[0.012-0.024] unit increase	Affymetrix [321114] (imputed)	N
668	chr8	10946860	10946861	rs2409694	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	8p23.1	XKR6	rs2409694-G	NR	3E-9		0.0168558	[0.011-0.022] unit increase	Affymetrix [321016] (imputed)	N
668	chr8	10954993	10954994	rs4840543	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	8p23.1	NR	rs4840543-T	0.634899	3E-8		0.0576895	[0.037-0.078] unit increase	Affymetrix [21375087] (imputed)	N
668	chr8	10956706	10956707	rs34891368	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	8p23.1		rs34891368-T	NR	4E-8		0.01	[0.0065-0.0135] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
668	chr8	10956706	10956707	rs34891368	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	XKR6	rs34891368-C	NR	2E-9		0.010429	[0.007-0.0138] unit decrease	Affymetrix [18485882] (imputed)	N
668	chr8	10957722	10957723	rs2409701	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	8p23.1		rs2409701-?	NR	3E-83		0.0393467	[0.035-0.043] unit increase	Affymetrix [20259828] (imputed)	N
668	chr8	10958525	10958526	rs2409703	34847907	Tegelberg P	2021-11-30	BMC Oral Health	Genome-wide association study of periodontal pocketing in Finnish adults.	Periodontal pocket (adjusted for age, sex, smoking status  and plaque)	3,906 Finnish ancestry individuals	NA	8p23.1		rs2409703-C	0.079	2E-6		0.28	[0.17-0.39] number of affected teeth increase	Illumina [NR] (imputed)	N
668	chr8	10958538	10958539	rs2898261	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	8p23.1	NR	rs2898261-T	NR	4E-27		0.0264	[0.022-0.031] unit decrease	Affymetrix [9000000] (imputed)	N
668	chr8	10958538	10958539	rs2898261	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	8p23.1	NR	rs2898261-T	NR	2E-10		0.0155	[0.011-0.02] unit decrease	Affymetrix [9000000] (imputed)	N
668	chr8	10958538	10958539	rs2898261	25017104	Kottyan LC	2014-07-13	Nat Genet	Genome-wide association analysis of eosinophilic esophagitis provides insight into the tissue specificity of this allergic disease.	Eosinophilic esophagitis	657 European ancestry cases, 9,296 European ancestry controls	NA	8p23.1	XKR6	rs2898261-C	0.58	5E-8		1.35	[NR]	Illumina [1468075]	N
668	chr8	10962799	10962800	rs1057626	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	8p23.1	NR	rs1057626-T	0.4906	9E-13	(Superior Temporal)	13.7550745	[9.98-17.53] unit decrease	Affymetrix, Illumina [NR]	N
668	chr8	10963618	10963619	rs62488580	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	XKR6, AF131215.9	rs62488580-T	NR	5E-9		0.0215943	[0.014-0.029] unit decrease	Affymetrix [323858] (imputed)	N
668	chr8	10963618	10963619	rs62488580	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	XKR6, AF131215.9	rs62488580-T	NR	2E-9		0.0220724	[0.015-0.029] unit decrease	Affymetrix [127266] (imputed)	N
668	chr8	10963618	10963619	rs62488580	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	8p23.1	NR	rs62488580-T	NR	1E-16		0.0238	[0.018-0.029] unit increase	Affymetrix [9000000] (imputed)	N
668	chr8	10972739	10972740	rs11250117	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	XKR6	rs11250117-A	NR	3E-8		0.0172545	[0.011-0.023] unit increase	Affymetrix [321114] (imputed)	N
668	chr8	10972739	10972740	rs11250117	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	8p23.1	XKR6	rs11250117-A	NR	2E-9		0.0187533	[0.013-0.025] unit increase	Affymetrix [323858] (imputed)	N
668	chr8	10972739	10972740	rs11250117	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Neuroticism	274,107 British ancestry individuals	NA	8p23.1	NR	rs11250117-A	0.4667	3E-19		0.0172	[0.013-0.021] unit increase	NR [8968716] (imputed)	N
668	chr8	10974916	10974917	rs10087081	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	XKR6	rs10087081-C	NR	5E-14		0.013212	[0.0098-0.0166] unit increase	Affymetrix [18485882] (imputed)	N
668	chr8	10975681	10975682	rs17724467	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	8p23.1	NR	rs17724467-G	0.525612	2E-14		0.050351	[0.037-0.064] unit decrease	Affymetrix [17914406] (imputed)	N
668	chr8	10982409	10982410	rs7830569	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	XKR6, AF131215.3	rs7830569-G	NR	1E-9		0.0194859	[0.013-0.026] unit increase	Affymetrix [323858] (imputed)	N
668	chr8	10982409	10982410	rs7830569	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	XKR6, AF131215.3	rs7830569-G	NR	2E-10		0.0203375	[0.014-0.027] unit increase	Affymetrix [127266] (imputed)	N
668	chr8	10983578	10983579	rs60383089	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	XKR6	rs60383089-T	NR	3E-14		0.0240801	[0.018-0.03] unit decrease	Affymetrix [323858] (imputed)	N
668	chr8	10983578	10983579	rs60383089	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	XKR6	rs60383089-T	NR	4E-15		0.0249964	[0.019-0.031] unit decrease	Affymetrix [127266] (imputed)	N
668	chr8	11009796	11009797	rs2409713	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	8p23.1	XKR6	rs2409713-T	NR	2E-8		0.0161288	[0.01-0.022] unit increase	Affymetrix [321169] (imputed)	N
669	chr8	11010747	11010748	rs2409716	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	XKR6	rs2409716-C	NR	9E-9		0.0179604	[0.012-0.024] unit increase	Affymetrix [321114] (imputed)	N
669	chr8	11010973	11010974	rs2409717	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	XKR6	rs2409717-G	NR	3E-9		0.0188092	[0.013-0.025] unit increase	Affymetrix [323858] (imputed)	N
669	chr8	11010973	11010974	rs2409717	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	XKR6	rs2409717-G	NR	4E-10		0.0197736	[0.014-0.026] unit increase	Affymetrix [127266] (imputed)	N
669	chr8	11010973	11010974	rs2409717	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	8p23.1	XKR6	rs2409717-G	NR	2E-8		0.0174543	[0.011-0.024] unit increase	Affymetrix [323858] (imputed)	N
669	chr8	11024325	11024326	rs4841503	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	8p23.1	XKR6	rs4841503-A	0.479	3E-29		0.0133	[0.011-0.016] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
669	chr8	11024662	11024663	rs4841504	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	8p23.1	NA	rs4841504-A	0.5008	5E-24		0.0166	[0.013-0.02] unit decrease	NR [~ 27400000] (imputed)	N
669	chr8	11024662	11024663	rs4841504	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	8p23.1	NA	rs4841504-A	0.5008	5E-24		0.0166	[0.013-0.02] unit decrease	NR [~ 27400000] (imputed)	N
669	chr8	11027440	11027441	rs7460469	29967481	Joo YB	2018-07-02	Sci Rep	Genetic variants in systemic lupus erythematosus susceptibility loci, XKR6 and GLT1D1 are associated with childhood-onset SLE in a Korean cohort.	Childhood onset systemic lupus erythematosus	96 Korean ancestry childhood onset cases, 685 Korean ancestry adult onset cases	NA	8p23.1	NR	rs7460469-A	0.03	1E-8		5.58	[3.09-10.10]	Illumina [648077]	N
669	chr8	11030934	11030935	rs7000132	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	XKR6	rs7000132-C	NR	2E-13		0.022897	[0.017-0.029] unit increase	Affymetrix [321114] (imputed)	N
669	chr8	11030934	11030935	rs7000132	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	8p23.1	XKR6	rs7000132-C	NR	2E-12		0.0220567	[0.016-0.028] unit increase	Affymetrix [323858] (imputed)	N
669	chr8	11031471	11031472	rs7004825	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume x hypertension interaction (2df)	46,055 European ancestry individuals	NA	8p23.1	XKR6	rs7004825-T	0.47	5E-8				Affymetrix, Illumina [9900000] (imputed)	N
669	chr8	11031471	11031472	rs7004825	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume (adjusted for hypertension)	46,055 European ancestry individuals	NA	8p23.1	XKR6	rs7004825-T	NR	5E-8		0.0322	[0.021-0.044] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
669	chr8	11031471	11031472	rs7004825	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	8p23.1	NR	rs7004825-?		3E-8	(Inferior fronto-occipital fasciculus)			NR [8955960] (imputed)	N
669	chr8	11032083	11032084	rs11986533	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	8p23.1	XKR6	rs11986533-T	0.903	6E-11		0.013	[0.0091-0.0169] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
669	chr8	11036055	11036056	rs10085919	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	8p23.1	MTMR9	rs10085919-A	0.8519	3E-8		0.015128596	[0.0098-0.0205] unit increase	Illumina [9339358] (imputed)	N
669	chr8	11036918	11036919	rs11777918	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	8p23.1	NR	rs11777918-?	NR	6E-6				Affymetrix [NR]	N
669	chr8	11038243	11038244	rs2409721	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	XKR6	rs2409721-T	NR	2E-12		0.0222215	[0.016-0.028] unit increase	Affymetrix [323858] (imputed)	N
669	chr8	11038243	11038244	rs2409721	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	XKR6	rs2409721-T	NR	1E-13		0.0232994	[0.017-0.029] unit increase	Affymetrix [127266] (imputed)	N
669	chr8	11038243	11038244	rs2409721	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	XKR6	rs2409721-A	NR	7E-13		0.012576	[0.0091-0.016] unit increase	Affymetrix [18485882] (imputed)	N
669	chr8	11039815	11039816	rs2409722	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	8p23.1	NR	rs2409722-T	NR	5E-9		5.851	z score decrease	Affymetrix [10847151] (imputed)	N
669	chr8	11039815	11039816	rs2409722	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Positive affect	180,281 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	8p23.1	NR	rs2409722-T	0.488	8E-6		0.0149	[0.0084-0.0214] unit increase	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
669	chr8	11040215	11040216	rs73198970	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	XKR6	rs73198970-C	NR	1E-10		0.0200688	[0.014-0.026] unit increase	Affymetrix [321114] (imputed)	N
669	chr8	11040215	11040216	rs73198970	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	8p23.1	XKR6	rs73198970-C	NR	1E-10		0.0201843	[0.014-0.026] unit increase	Affymetrix [323858] (imputed)	N
669	chr8	11042448	11042449	rs10095003	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	XKR6	rs10095003-G	NR	4E-11		0.011448	[0.0081-0.0148] unit increase	Affymetrix [18485882] (imputed)	N
669	chr8	11045160	11045161	rs7819412	19060906	Kathiresan S	2008-12-07	Nat Genet	Common variants at 30 loci contribute to polygenic dyslipidemia.	Triglycerides	19,840 European ancestry individuals	Up to 20,623 European ancestry individuals	8p23.1	XKR6, AMAC1L2	rs7819412-G	0.48	3E-8		0.04	[0.001-0.08] s.d. decrease	Affymetrix, Illumina [~ 2600000] (imputed)	N
669	chr8	11046208	11046209	rs10156356	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	XKR6	rs10156356-T	NR	5E-11		0.011431	[0.008-0.0148] unit increase	Affymetrix [18485882] (imputed)	N
669	chr8	11053921	11053922	rs28633434	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Subjective well-being	298,420 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	8p23.1	NR	rs28633434-A	0.4823	2E-6		0.0140695125	[0.0083-0.0199] unit decrease	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
669	chr8	11054096	11054097	rs17783634	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Subjective well-being	298,420 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	8p23.1	NR	rs17783634-A	0.4835	5E-7		0.0131	[0.008-0.0182] unit decrease	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
669	chr8	11061791	11061792	rs6981523	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	8p23.1	NR	rs6981523-T	0.507223189534633	7E-32		0.021959106	[0.018-0.026] unit increase	NR [NR]	N
669	chr8	11061791	11061792	rs6981523	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	8p23.1	NR	rs6981523-T	0.50684	5E-22		0.054139	[0.043-0.065] unit increase	Illumina [18485882] (imputed)	N
669	chr8	11061791	11061792	rs6981523	27918536	Lo MT	2016-12-05	Nat Genet	Genome-wide analyses for personality traits identify six genomic loci and show correlations with psychiatric disorders.	Neuroticism	122,867 European ancestry individuals	137,994 European ancestry individuals	8p23.1	XKR6	rs6981523-T	0.5	3E-24		0.098	[0.069-0.127] unit increase UK Biobank replication cohort	Affymetrix, Illumina [6337541] (imputed)	N
669	chr8	11062881	11062882	rs7010590	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	8p23.1	NR	rs7010590-C	0.508096355670064	1E-18		0.008087126	[0.0063-0.0099] unit increase	NR [NR]	N
669	chr8	11069959	11069960	rs2409742	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	8p23.1	NR	rs2409742-C	0.5074	7E-15		0.0361	[0.027-0.045] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
669	chr8	11069959	11069960	rs2409742	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	8p23.1	NR	rs2409742-C	0.5255	3E-16		0.0341	[0.026-0.042] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
669	chr8	11070359	11070360	rs2409743	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	8p23.1	XKR6	rs2409743-C	0.503174	3E-15		0.0110699	[0.0083-0.0138] unit increase	Affymetrix [12370749]	N
669	chr8	11071056	11071057	rs6987059	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume x hypertension interaction (2df)	46,055 European ancestry individuals, 2,469 African American individuals	NA	8p23.1	XKR6	rs6987059-A	0.5678	9E-7				Affymetrix, Illumina [9900000] (imputed)	N
669	chr8	11071056	11071057	rs6987059	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume (adjusted for hypertension)	46,055 European ancestry individuals, 2,469 African American individuals	NA	8p23.1	XKR6	rs6987059-A	0.5678	3E-7		0.031	[0.019-0.043] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
669	chr8	11071056	11071057	rs6987059	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	48,454 European ancestry individuals	NA	8p23.1	XKR6	rs6987059-A	0.5678	9E-8		0.0311	[0.02-0.042] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
669	chr8	11071056	11071057	rs6987059	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	2,516 African American individuals, 48,454 European ancestry individuals	NA	8p23.1	XKR6	rs6987059-A	0.5678	2E-7		0.0312	[0.02-0.043] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
669	chr8	11074365	11074365	rs36095784	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fish- and plant-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	8p23.1	PRAG1, MFHAS1, ERI1, MSRA, RP1L1, C8orf74, SOX7, PINX1, XKR6, MTMR9, SLC35G5, C8orf12, FAM167A, BLK, GATA4, DEFB136, DEFB135, DEFB134, DEFB130	rs36095784-?	NR	2E-12	(female)	0.0234668	[0.017-0.03] unit increase	Affymetrix [25921788] (imputed)	N
669	chr8	11074365	11074365	rs36095784	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fish- and plant-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	8p23.1	PRAG1, CLDN23, MFHAS1, ERI1, PPP1R3B, TNKS, MSRA, RP1L1, C8orf74, SOX7, PINX1, XKR6, MTMR9, SLC35G5, FAM167A, BLK, GATA4, C8orf49, FDFT1, CTSB, DEFB136, DEFB135, DEFB134, DEFB130	rs36095784-?	NR	4E-16		0.0198629	[0.015-0.025] unit increase	Affymetrix [25921788] (imputed)	N
669	chr8	11078780	11078781	rs4512344	28472463	Mullin BH	2017-05-04	Hum Mol Genet	Genome-wide association study meta-analysis for quantitative ultrasound parameters of bone identifies five novel loci for broadband ultrasound attenuation.	Bone ultrasound measurement (broadband ultrasound attenuation)	1,268 whole genome sequenced European ancestry women, 8,880 European ancestry women, 6,479 European ancestry men	NA	8p23.1	XKR6, MTMR9	rs4512344-A	0.49	4E-7		0.06	[0.04-0.08] unit increase	Illumina [11973598] (imputed)	N
669	chr8	11078948	11078949	rs2409749	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	8p23.1	intergenic	rs2409749-A	0.51151	2E-32		11.865	z score increase	Illumina [18485882] (imputed)	N
669	chr8	11082172	11082173	rs4141830	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fruit consumption	335,576 European ancestry individuals	NA	8p23.1	MSRA, XKR6, MTMR9, SLC35G5, GATA4	rs4141830-?	NR	1E-8		0.0193637	[0.013-0.026] unit increase	Affymetrix [25921788] (imputed)	N
669	chr8	11082172	11082173	rs4141830	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	8p23.1	Intergenic	rs4141830-T	0.8504	6E-10		0.0169	[0.012-0.022] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
669	chr8	11085044	11085045	rs59828823	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	8p23.1		rs59828823-?	NR	1E-10		0.0225284	[0.016-0.029] unit increase	Affymetrix [20259828] (imputed)	N
669	chr8	11087693	11087694	rs2409750	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	8p23.1	NR	rs2409750-C	NR	2E-10		0.0204	[0.014-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
669	chr8	11089078	11089079	rs10092549	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	LINC00529	rs10092549-C	NR	4E-9		0.010237	[0.0068-0.0136] unit increase	Affymetrix [18485882] (imputed)	N
669	chr8	11092251	11092252	rs2572406	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8p23.1	LINC00529	rs2572406-G	NR	2E-10		0.0181527	[0.013-0.024] unit decrease	Affymetrix [321114] (imputed)	N
669	chr8	11092251	11092252	rs2572406	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	8p23.1	LINC00529	rs2572406-G	NR	7E-9		0.0166146	[0.011-0.022] unit decrease	Affymetrix [321169] (imputed)	N
669	chr8	11097803	11097804	rs6601575	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	LINC00529	rs6601575-C	NR	3E-10		0.0199007	[0.014-0.026] unit decrease	Affymetrix [323858] (imputed)	N
669	chr8	11097803	11097804	rs6601575	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	LINC00529	rs6601575-C	NR	7E-11		0.020558	[0.014-0.027] unit decrease	Affymetrix [127266] (imputed)	N
669	chr8	11097803	11097804	rs6601575	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	LINC00529	rs6601575-C	NR	4E-9		0.0182943	[0.012-0.024] unit decrease	Affymetrix [321114] (imputed)	N
669	chr8	11097803	11097804	rs6601575	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	8p23.1	LINC00529	rs6601575-C	NR	2E-8		0.0175402	[0.011-0.024] unit decrease	Affymetrix [323858] (imputed)	N
669	chr8	11099198	11099199	rs7814131	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	8p23.1	MTMR9	rs7814131-T	0.5366	5E-10		0.0120858075	[0.0083-0.0159] unit increase	Illumina [9339358] (imputed)	N
669	chr8	11101040	11101041	rs2572433	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8p23.1	LINC00529	rs2572433-G	NR	9E-9		0.0170939	[0.011-0.023] unit increase	Affymetrix [321114] (imputed)	N
669	chr8	11101040	11101041	rs2572433	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	8p23.1	LINC00529	rs2572433-G	NR	7E-10		0.0199087	[0.014-0.026] unit increase	Affymetrix [323858] (imputed)	N
669	chr8	11104110	11104111	rs7824557	21060863	Ikram MK	2010-10-28	PLoS Genet	Four novel Loci (19q13, 6q24, 12q24, and 5q14) influence the microcirculation in vivo.	Retinal vascular caliber	15,358 European ancestry individuals	6,652 European ancestry individuals	8p23.1	XKR6, SOX7, GATA4, MTMR9, PINX1	rs7824557-G	0.39	4E-7	(Retinal venular caliber)	1.0	[0.61-1.39] um increase	Affymetrix, Illumina [2194468] (imputed)	N
669	chr8	11105076	11105077	rs2572431	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	LINC00529	rs2572431-C	NR	2E-11		0.021175	[0.015-0.027] unit decrease	Affymetrix [323858] (imputed)	N
669	chr8	11105076	11105077	rs2572431	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	LINC00529	rs2572431-C	NR	3E-12		0.0220823	[0.016-0.028] unit decrease	Affymetrix [127266] (imputed)	N
669	chr8	11105076	11105077	rs2572431	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on self-rated math ability (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	8p23.1		rs2572431-?	NR	3E-20				NR [NR]	N
669	chr8	11105076	11105077	rs2572431	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on average household income before tax (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	8p23.1		rs2572431-?	NR	2E-22				NR [NR]	N
669	chr8	11105076	11105077	rs2572431	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on Townsend deprivation index (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	8p23.1		rs2572431-?	NR	2E-23				NR [NR]	N
669	chr8	11105076	11105077	rs2572431	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	8p23.1	NR	rs2572431-T	0.56984	1E-18		0.049189	[0.038-0.060] unit increase	Illumina [18485882] (imputed)	N
669	chr8	11105076	11105077	rs2572431	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Neuroticism	170,911 European ancestry individuals	NA	8p23.1	NR	rs2572431-T	0.59	4E-16		0.028283728	[0.021-0.035] unit increase	Affymetrix [up to 6544775] (imputed)	N
669	chr8	11105760	11105761	rs7814667	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	8p23.1	NR	rs7814667-G	NR	1E-9		0.0347	[0.024-0.046] unit increase	Affymetrix [9000000] (imputed)	N
669	chr8	11108467	11108468	rs920050	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	LINC00529	rs920050-C	NR	7E-9		0.010026	[0.0066-0.0134] unit increase	Affymetrix [18485882] (imputed)	N
669	chr8	11109302	11109303	rs10481454	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	8p23.1	NR	rs10481454-G	0.547843	8E-12		0.044928	[0.032-0.058] unit decrease	Affymetrix [17914406] (imputed)	N
669	chr8	11109690	11109691	rs2736373	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	8p23.1	NR	rs2736373-C	0.8547	5E-10	(Superior Temporal)	17.071743	[11.69-22.46] unit decrease	Affymetrix, Illumina [NR]	N
669	chr8	11111461	11111462	rs2572417	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	8p23.1		rs2572417-A	0.446941	8E-18		0.034643	[0.027-0.043] unit increase	NR [11722792] (imputed)	N
669	chr8	11113827	11113828	rs2736374	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	LINC00529, RPL19P13	rs2736374-C	NR	3E-11		0.0213165	[0.015-0.028] unit increase	Affymetrix [127266] (imputed)	N
669	chr8	11119036	11119037	rs2251301	19875103	Aberg K	2009-10-27	Biol Psychiatry	Genomewide association study of movement-related adverse antipsychotic effects.	Response to antipsychotic therapy (extrapyramidal side effects)	421 European ancestry schizophrenia cases, 214 African American schizophrenia cases, 103 schizophrenia cases	NA	8p23.1	intergenic	rs2251301-?	NR	1E-6	(BARS)			Affymetrix [492000]	N
669	chr8	11119759	11119760	rs2736378	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	8p23.1	Intergenic	rs2736378-A	0.5801	8E-9	(MTAG)	0.0096	[0.0063-0.0129] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
669	chr8	11119854	11119855	rs11986879	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	8p23.1	NR	rs11986879-A	NR	5E-18		0.0244	[0.019-0.03] unit decrease	Affymetrix [9000000] (imputed)	N
669	chr8	11130976	11130977	rs10098488	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	LINC00529	rs10098488-G	NR	1E-12		0.0222422	[0.016-0.028] unit decrease	Affymetrix [321114] (imputed)	N
669	chr8	11130976	11130977	rs10098488	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	8p23.1	LINC00529	rs10098488-G	NR	2E-11		0.0211121	[0.015-0.027] unit decrease	Affymetrix [323858] (imputed)	N
669	chr8	11130976	11130977	rs10098488	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	LINC00529	rs10098488-G	NR	7E-12		0.01193	[0.0085-0.0153] unit increase	Affymetrix [18485882] (imputed)	N
669	chr8	11133735	11133736	rs10110008	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	8p23.1		rs10110008-G	0.420702	3E-18		0.0354153	[0.027-0.043] unit decrease	NR [11722792] (imputed)	N
669	chr8	11133735	11133736	rs10110008	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	8p23.1		rs10110008-G	0.420702	1E-19		0.036397	[0.029-0.044] unit increase	NR [11722792] (imputed)	N
670	chr8	11156119	11156120	rs4410870	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	MTMR9	rs4410870-G	NR	2E-10		0.0202409	[0.014-0.026] unit increase	Affymetrix [323858] (imputed)	N
670	chr8	11156119	11156120	rs4410870	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	MTMR9	rs4410870-G	NR	4E-10		0.0197033	[0.014-0.026] unit increase	Affymetrix [321114] (imputed)	N
670	chr8	11168498	11168499	rs2164273	27918536	Lo MT	2016-12-05	Nat Genet	Genome-wide analyses for personality traits identify six genomic loci and show correlations with psychiatric disorders.	Extraversion	122,886 European ancestry individuals	46,621 European ancestry individuals	8p23.1	MTMR9	rs2164273-G	0.39	2E-9		0.024	[0.012-0.036] unit increase GPC-2 Discovery cohort	Affymetrix, Illumina [6343667] (imputed)	N
670	chr8	11169853	11169854	rs1897951	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on highest math class (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	8p23.1		rs1897951-?	NR	1E-22				NR [NR]	N
670	chr8	11172122	11172123	rs4515509	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	MTMR9	rs4515509-A	NR	1E-8		0.0099722	[0.0066-0.0134] unit decrease	Affymetrix [18485882] (imputed)	N
670	chr8	11174483	11174484	rs11784572	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	MTMR9, AF131216.6	rs11784572-G	NR	2E-9		0.0194144	[0.013-0.026] unit increase	Affymetrix [323858] (imputed)	N
670	chr8	11174483	11174484	rs11784572	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	MTMR9, AF131216.6	rs11784572-G	NR	3E-10		0.0202801	[0.014-0.027] unit increase	Affymetrix [127266] (imputed)	N
670	chr8	11176402	11176403	rs2572397	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	8p23.1		rs2572397-G	0.551658	1E-18		0.0349819	[0.027-0.043] unit decrease	NR [11722792] (imputed)	N
670	chr8	11176402	11176403	rs2572397	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	8p23.1		rs2572397-G	0.551658	1E-15		0.0310837	[0.023-0.039] unit decrease	NR [11722792] (imputed)	N
670	chr8	11176402	11176403	rs2572397	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	8p23.1		rs2572397-G	0.551658	4E-16		0.031827	[0.024-0.039] unit decrease	NR [11722792] (imputed)	N
670	chr8	11176402	11176403	rs2572397	35079123	Chambers T	2022-01-25	Mol Psychiatry	Genetic common variants associated with cerebellar volume and their overlap with mental disorders: a study on 33,265 individuals from the UK-Biobank.	Total cerebellar volume (excluding Crus I vermis)	33,265 European ancestry individuals	NA	8p23.1		rs2572397-A	NR	3E-9		0.0325	[0.022-0.043] unit decrease	Affymetrix [6193476] (imputed)	N
670	chr8	11177125	11177126	rs2251473	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	8p23.1		rs2251473-C	0.556373	2E-19		0.0352961	[0.028-0.043] unit increase	NR [11722792] (imputed)	N
670	chr8	11177125	11177126	rs2251473	32589924	Bi W	2020-06-23	Am J Hum Genet	A Fast and Accurate Method for Genome-Wide Time-to-Event Data Analysis and Its Application to UK Biobank.	Essential hypertension (time to event)	76,566 British ancestry cases, 206,305 British ancestry controls	NA	8p23.1	MTMR9	rs2251473-?	NR	1E-7				NR [~ 24000000] (imputed)	N
670	chr8	11177446	11177447	rs2293856	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on educational attainment (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	8p23.1		rs2293856-?	NR	6E-24				NR [NR]	N
670	chr8	11177446	11177447	rs2293856	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on cognitive performance (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	8p23.1		rs2293856-?	NR	4E-24				NR [NR]	N
670	chr8	11178092	11178093	rs2572398	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	8p23.1		rs2572398-A	0.550269	1E-21		0.0382384	[0.03-0.046] unit increase	NR [11722792] (imputed)	N
670	chr8	11178092	11178093	rs2572398	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	8p23.1		rs2572398-A	0.550269	6E-23		0.0385813	[0.031-0.046] unit increase	NR [11722792] (imputed)	N
670	chr8	11178092	11178093	rs2572398	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	8p23.1		rs2572398-A	0.550269	1E-18		0.0347462	[0.027-0.042] unit decrease	NR [11722792] (imputed)	N
670	chr8	11178092	11178093	rs2572398	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	8p23.1		rs2572398-A	0.550269	6E-20		0.0359954	[0.028-0.044] unit decrease	NR [11722792] (imputed)	N
670	chr8	11178092	11178093	rs2572398	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	8p23.1		rs2572398-A	0.550269	2E-20		0.0365952	[0.029-0.044] unit decrease	NR [11722792] (imputed)	N
670	chr8	11178092	11178093	rs2572398	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	8p23.1		rs2572398-A	0.550269	3E-19		0.0366837	[0.029-0.045] unit decrease	NR [11722792] (imputed)	N
670	chr8	11178092	11178093	rs2572398	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	8p23.1		rs2572398-A	0.550269	6E-24		0.0391281	[0.032-0.047] unit decrease	NR [11722792] (imputed)	N
670	chr8	11178092	11178093	rs2572398	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	8p23.1		rs2572398-A	0.550265	2E-17		0.033834	[0.026-0.042] unit decrease	NR [11722792] (imputed)	N
670	chr8	11178092	11178093	rs2572398	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	8p23.1		rs2572398-A	0.550269	4E-22		0.0388636	[0.031-0.047] unit decrease	NR [11722792] (imputed)	N
670	chr8	11178092	11178093	rs2572398	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	8p23.1		rs2572398-A	0.550269	2E-23		0.0388011	[0.031-0.046] unit decrease	NR [11722792] (imputed)	N
670	chr8	11179457	11179458	rs3808502	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	8p23.1	intergenic	rs3808502-T	0.43169	5E-22		9.651	z score decrease	Illumina [18485882] (imputed)	N
670	chr8	11191347	11191348	rs138303178	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	153,512 East Asian ancestry individuals	NA	8p23.1		rs138303178-T	0.058306	4E-8		0.0390571	[0.025-0.053] unit increase	Illumina [13479135] (imputed)	N
670	chr8	11213249	11213250	rs2060457	31888951	Schlauch KA	2019-12-30	G3 (Bethesda)	A Comprehensive Genome-Wide and Phenome-Wide Examination of BMI and Obesity in a Northern Nevadan Cohort.	Obesity (extreme)	984 cases, 2,012 controls	NA	8p23.1	TDH	rs2060457-T	0.4876	3E-8		1.379	[1.27-1.49]	Illumina [500508]	N
670	chr8	11213249	11213250	rs2060457	31888951	Schlauch KA	2019-12-30	G3 (Bethesda)	A Comprehensive Genome-Wide and Phenome-Wide Examination of BMI and Obesity in a Northern Nevadan Cohort.	Body mass index	5,994 non-diabetic individuals, 651 diabetic individuals	NA	8p23.1	TDH	rs2060457-T	0.4858	9E-8		0.5802	[0.37-0.79] unit increase	Illumina [500508]	N
670	chr8	11213249	11213250	rs2060457	31888951	Schlauch KA	2019-12-30	G3 (Bethesda)	A Comprehensive Genome-Wide and Phenome-Wide Examination of BMI and Obesity in a Northern Nevadan Cohort.	Body mass index	5,994 non-diabetic individuals	NA	8p23.1	TDH	rs2060457-T	0.4858	6E-7		0.5584	[0.34-0.78] unit increase	Illumina [500508]	N
670	chr8	11214454	11214455	rs11250130	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	8p23.1	NR	rs11250130-G	0.529094	2E-8		0.0377518	[0.024-0.051] unit increase	Affymetrix [17914406] (imputed)	N
670	chr8	11217454	11217455	rs2572375	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	8p23.1	NR	rs2572375-C	NR	4E-8		1.046	[1.03-1.06]	Affymetrix, Illumina [29235255] (imputed)	N
670	chr8	11240570	11240571	rs11787413	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	C8orf12	rs11787413-T	NR	2E-8		0.0188862	[0.012-0.025] unit increase	Affymetrix [323858] (imputed)	N
670	chr8	11240570	11240571	rs11787413	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	C8orf12	rs11787413-T	NR	6E-9		0.0194599	[0.013-0.026] unit increase	Affymetrix [127266] (imputed)	N
670	chr8	11242631	11242632	rs12547100	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	C8orf12	rs12547100-A	NR	1E-12		0.0222921	[0.016-0.028] unit increase	Affymetrix [323858] (imputed)	N
670	chr8	11242631	11242632	rs12547100	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	C8orf12	rs12547100-A	NR	2E-13		0.023205	[0.017-0.029] unit increase	Affymetrix [127266] (imputed)	N
670	chr8	11248499	11248500	rs2736308	34390503	Yang G	2021-08-14	Clin Pharmacol Ther	Genome-wide Association Study Identified Chromosome 8 Locus Associated with Medication-related Osteonecrosis of the Jaw.	Bisphosphonate-related osteonecrosis of the jaw in cancer (i.v. bisphosphonate)	217 European ancestry cases, 2,208 European ancestry controls	109 European ancestry cases, 1,105 European ancestry controls	8p23.1		rs2736308-C	0.34	4E-8		2.71	[1.9-3.86]	Illumina [126146] (imputed)	N
670	chr8	11248499	11248500	rs2736308	34390503	Yang G	2021-08-14	Clin Pharmacol Ther	Genome-wide Association Study Identified Chromosome 8 Locus Associated with Medication-related Osteonecrosis of the Jaw.	Bisphosphonate-related osteonecrosis of the jaw	444 European ancestry cases, 4,564 European ancestry controls	NA	8p23.1		rs2736308-C	0.34	1E-10		2.74	[2.09-3.39]	Illumina [126146] (imputed)	N
670	chr8	11249009	11249010	rs2572440	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	C8orf12	rs2572440-G	NR	2E-9		0.0187557	[0.013-0.025] unit increase	Affymetrix [321114] (imputed)	N
670	chr8	11249009	11249010	rs2572440	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	8p23.1	C8orf12	rs2572440-G	NR	9E-9		0.0178877	[0.012-0.024] unit increase	Affymetrix [323858] (imputed)	N
670	chr8	11249009	11249010	rs2572440	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	C8orf12	rs2572440-G	NR	6E-9		0.010188	[0.0068-0.0136] unit decrease	Affymetrix [18485882] (imputed)	N
670	chr8	11252424	11252425	rs34944514	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic obstructive pulmonary disease	13,530 European ancestry cases, 454,945 European ancestry controls, 4,017 East Asian ancestry cases, 162,653 East Asian ancestry controls	NA	8p23.1		rs34944514-A	NR	2E-8		0.0763	[0.05-0.103] unit increase	Affymetrix, Illumina [25843162] (imputed)	N
670	chr8	11253813	11253814	rs10090939	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	C8orf12	rs10090939-C	NR	4E-11		0.0215882	[0.015-0.028] unit decrease	Affymetrix [323858] (imputed)	N
670	chr8	11253813	11253814	rs10090939	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	C8orf12	rs10090939-C	NR	2E-12		0.0231637	[0.017-0.03] unit decrease	Affymetrix [127266] (imputed)	N
670	chr8	11253813	11253814	rs10090939	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	C8orf12	rs10090939-C	NR	2E-12		0.0226994	[0.016-0.029] unit decrease	Affymetrix [321114] (imputed)	N
670	chr8	11253813	11253814	rs10090939	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	8p23.1	C8orf12	rs10090939-C	NR	3E-10		0.0205196	[0.014-0.027] unit decrease	Affymetrix [323858] (imputed)	N
670	chr8	11255574	11255575	rs9969423	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	C8orf12	rs9969423-A	NR	6E-9		0.0183324	[0.012-0.025] unit decrease	Affymetrix [127266] (imputed)	N
670	chr8	11255574	11255575	rs9969423	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	C8orf12	rs9969423-A	NR	8E-9		0.010061	[0.0066-0.0135] unit increase	Affymetrix [18485882] (imputed)	N
670	chr8	11255574	11255575	rs9969423	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption interaction (2df test)	63,608 European ancestry drinkers, 10,193 African American or Afro-Caribbean heavy drinkers,  2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,494 European ancestry non-drinkers, 11,224 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,002 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,452 Hispanic drinkers, 43,316 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,945 Asian ancestry non-drinkers, 6,925 Hispanic non-drinkers	8p23.1	FAM167A-AS1, C8orf12	rs9969423-A	0.5	5E-13	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
670	chr8	11258455	11258456	rs4841527	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	C8orf12	rs4841527-T	NR	1E-9		0.010614	[0.0072-0.014] unit decrease	Affymetrix [18485882] (imputed)	N
670	chr8	11264597	11264598	rs10110559	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	C8orf12	rs10110559-C	NR	3E-8		0.0191837	[0.012-0.026] unit increase	Affymetrix [323858] (imputed)	N
670	chr8	11264597	11264598	rs10110559	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	C8orf12	rs10110559-C	NR	5E-9		0.0203097	[0.013-0.027] unit increase	Affymetrix [127266] (imputed)	N
670	chr8	11268541	11268542	rs11785499	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8p23.1	C8orf12	rs11785499-C	NR	1E-8		0.0164081	[0.011-0.022] unit decrease	Affymetrix [321114] (imputed)	N
670	chr8	11272163	11272164	rs7836059	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	C8orf12	rs7836059-A	NR	2E-9		0.0187671	[0.013-0.025] unit increase	Affymetrix [321114] (imputed)	N
670	chr8	11272163	11272164	rs7836059	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	8p23.1	C8orf12	rs7836059-A	NR	4E-8		0.0170478	[0.011-0.023] unit increase	Affymetrix [323858] (imputed)	N
671	chr8	11276541	11276542	rs2002030	20125193	Cirulli ET	2010-02-03	Eur J Hum Genet	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American individuals, up to 74 South Asian ancestry individuals	NA	8p23.1	C8orf12	rs2002030-?	NR	5E-6	(Immediate Story Recall)			Illumina [up to 563855]	N
671	chr8	11277432	11277433	rs2001707	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	C8orf12	rs2001707-C	NR	1E-8		0.0181197	[0.012-0.024] unit increase	Affymetrix [323858] (imputed)	N
671	chr8	11277432	11277433	rs2001707	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	C8orf12	rs2001707-C	NR	1E-9		0.0193051	[0.013-0.026] unit increase	Affymetrix [127266] (imputed)	N
671	chr8	11277432	11277433	rs2001707	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	C8orf12	rs2001707-T	NR	3E-9		0.010338	[0.0069-0.0138] unit increase	Affymetrix [18485882] (imputed)	N
671	chr8	11278145	11278146	rs11250135	29511194	Helgadottir A	2018-03-07	Nat Commun	Genome-wide analysis yields new loci associating with aortic valve stenosis.	Aortic valve stenosis	2,457 Icelandic ancestry cases, 349,342 Icelandic ancestry controls (including non-array genotyped, whole genome imputed individuals)	4,850 European ancestry cases, 451,731 European ancestry controls	8p23.1	NR	rs11250135-T	0.349	7E-6		1.09	[1.05-1.13]	Illumina [32500000] (imputed)	N
671	chr8	11281272	11281273	rs2409764	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	FAM167A	rs2409764-A	NR	1E-11		0.011759	[0.0084-0.0152] unit increase	Affymetrix [18485882] (imputed)	N
671	chr8	11285134	11285135	rs12156238	28039263	Wheeler HE	2016-12-30	Clin Cancer Res	Variants in WFS1 and Other Mendelian Deafness Genes Are Associated with Cisplatin-Associated Ototoxicity.	Cisplatin-induced ototoxicity	511 European ancestry testicular cancer survivor individuals	238 children	8p23.1	FAM167A	rs12156238-C	NR	5E-7		5.032	z score increase	Illumina [5060354] (imputed)	N
671	chr8	11285218	11285219	rs12156009	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	C8orf12, FAM167A	rs12156009-A	NR	9E-13		0.012444	[0.009-0.0159] unit increase	Affymetrix [18485882] (imputed)	N
671	chr8	11285383	11285384	rs10102600	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	8p23.1	FAM167A-AS1	rs10102600-C	NR	1E-6		1.0690614	NR	Affymetrix, Illumina [8278136] (imputed)	N
671	chr8	11293389	11293390	rs4841531	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	8p23.1	FAM167A-AS1, FAM167A, BLK	rs4841531-?	NR	9E-8	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
671	chr8	11293389	11293390	rs4841531	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	8p23.1	FAM167A-AS1, FAM167A, BLK	rs4841531-?	NR	1E-8				Affymetrix, Illumina [18800000] (imputed)	N
671	chr8	11293389	11293390	rs4841531	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	8p23.1	FAM167A-AS1, FAM167A, BLK	rs4841531-?	NR	4E-8				Affymetrix, Illumina [18800000] (imputed)	N
671	chr8	11293389	11293390	rs4841531	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	8p23.1	FAM167A-AS1, FAM167A, BLK	rs4841531-?		4E-7	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
671	chr8	11293457	11293458	rs6998387	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	FAM167A, C8orf12	rs6998387-G	NR	2E-8		0.0098122	[0.0064-0.0132] unit decrease	Affymetrix [18485882] (imputed)	N
671	chr8	11295250	11295251	rs2898279	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Small cell lung carcinoma	2,664 European ancestry cases,  21,444 European ancestry controls	NA	8p23.1	FAM167A-AS1	rs2898279-G	0.659080483	6E-6		1.1534675	[1.08-1.23]	Illumina [10439017] (imputed)	N
671	chr8	11302480	11302481	rs9792375	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	FAM167A	rs9792375-G	NR	4E-8		0.017339	[0.011-0.024] unit decrease	Affymetrix [127266] (imputed)	N
671	chr8	11304320	11304321	rs11777505	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	FAM167A	rs11777505-A	NR	1E-8		0.0192197	[0.013-0.026] unit decrease	Affymetrix [321114] (imputed)	N
671	chr8	11304320	11304321	rs11777505	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	8p23.1	FAM167A	rs11777505-A	NR	1E-9		0.020556	[0.014-0.027] unit decrease	Affymetrix [323858] (imputed)	N
671	chr8	11305563	11305564	rs28448403	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (90 or 130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	8p23.1	FAM167A	rs28448403-?	NR	6E-6		0.131	[0.057-0.205] unit increase	Illumina [at least 13000000] (imputed)	N
671	chr8	11306845	11306846	rs3989103	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	FAM167A	rs3989103-A	NR	3E-11		0.0221445	[0.016-0.029] unit decrease	Affymetrix [323858] (imputed)	N
671	chr8	11306845	11306846	rs3989103	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	FAM167A	rs3989103-A	NR	8E-12		0.0228219	[0.016-0.029] unit decrease	Affymetrix [127266] (imputed)	N
671	chr8	11306845	11306846	rs3989103	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8p23.1	FAM167A	rs3989103-A	NR	1E-11		0.0205142	[0.015-0.026] unit decrease	Affymetrix [321114] (imputed)	N
671	chr8	11306845	11306846	rs3989103	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	8p23.1	FAM167A	rs3989103-A	NR	2E-10		0.0193351	[0.013-0.025] unit decrease	Affymetrix [321169] (imputed)	N
671	chr8	11307310	11307311	rs67539049	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	8p23.1	FAM167A	rs67539049-G	NR	2E-6		0.0212318	[0.012-0.03] unit decrease	Illumina [13520550] (imputed)	N
671	chr8	11308905	11308905	rs780547760	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	FAM167A	rs780547760-G	NR	2E-8		0.0179919	[0.012-0.024] unit increase	Affymetrix [323858] (imputed)	N
671	chr8	11308905	11308905	rs780547760	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	FAM167A	rs780547760-G	NR	2E-9		0.0191486	[0.013-0.025] unit increase	Affymetrix [127266] (imputed)	N
671	chr8	11309191	11309192	rs13255193	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	8p23.1		rs13255193-T	0.457	1E-10		0.07	[-0.09--0.05] % decrease	Affymetrix [NR] (imputed)	N
671	chr8	11309191	11309192	rs13255193	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption (light vs heavy) interaction (2df test)	12,758 European ancestry heavy drinkers, 1,326 African American or Afro-Caribbean heavy drinkers, 648 Asian ancestry heavy drinkers, 364 Hispanic or Latin American heavy drinkers, 43,947 European ancestry light drinkers, 8,239 African American or Afro-Caribbean light drinkers, 1,141 Asian ancestry light drinkers, 4,448 Hispanic or Latin American light drinkers	42,078 European ancestry heavy drinkers, 217 African American heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic heavy drinkers, 74,706 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	8p23.1	FAM167A	rs13255193-T	0.46	6E-10	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
671	chr8	11310011	11310012	rs13439415	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	FAM167A	rs13439415-A	NR	2E-12		0.012195	[0.0088-0.0156] unit increase	Affymetrix [18485882] (imputed)	N
671	chr8	11310567	11310568	rs57526558	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8p23.1	FAM167A	rs57526558-G	NR	2E-10		0.0185894	[0.013-0.024] unit increase	Affymetrix [321114] (imputed)	N
671	chr8	11315591	11315592	rs75637965	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	8p23.1	FAM167A	rs75637965-C	0.13	9E-6		1.08	[1.04-1.11]	Illumina [161311]	N
671	chr8	11323877	11323878	rs2736318	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	FAM167A	rs2736318-G	NR	9E-11		0.011227	[0.0078-0.0146] unit increase	Affymetrix [18485882] (imputed)	N
671	chr8	11326492	11326493	rs34801597	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	FAM167A	rs34801597-A	NR	4E-9		0.0203871	[0.014-0.027] unit decrease	Affymetrix [323858] (imputed)	N
671	chr8	11326492	11326493	rs34801597	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	FAM167A	rs34801597-A	NR	1E-9		0.0210946	[0.014-0.028] unit decrease	Affymetrix [127266] (imputed)	N
671	chr8	11326492	11326493	rs34801597	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	FAM167A	rs34801597-G	NR	2E-8		0.0097818	[0.0064-0.0132] unit decrease	Affymetrix [18485882] (imputed)	N
671	chr8	11328834	11328835	rs2736326	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	8p23.1	NR	rs2736326-G	NR	9E-19		0.0326	[0.025-0.04] unit decrease	Affymetrix [9000000] (imputed)	N
671	chr8	11330340	11330341	rs17742757	25461247	Lehmann DS	2015-02-01	Pharmacogenet Genomics	Genome-wide association study of virologic response with efavirenz-containing or abacavir-containing regimens in AIDS clinical trials group protocols.	Response to efavirenz-containing treatment in HIV 1 infection (virologic failure)	Up to 737 European ancestry individuals, Up to 545 Black individuals, Up to 314 Hispanic individuals	NA	8p23.1	NR	rs17742757-C	NR	8E-6	(phenotype 2)	1.64	[NR]	Illumina [> 8000000] (imputed)	N
671	chr8	11331163	11331164	rs61649748	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	8p23.1	Intergenic	rs61649748-T	0.7801	1E-8		0.0134	[0.0087-0.0181] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
671	chr8	11332963	11332964	rs13257831	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8p23.1	FAM167A	rs13257831-C	NR	8E-12		0.0212073	[0.015-0.027] unit decrease	Affymetrix [321114] (imputed)	N
671	chr8	11332963	11332964	rs13257831	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	8p23.1	FAM167A	rs13257831-C	NR	1E-10		0.020031	[0.014-0.026] unit decrease	Affymetrix [321169] (imputed)	N
671	chr8	11333352	11333353	rs936546	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	FAM167A	rs936546-T	NR	4E-11		0.0209714	[0.015-0.027] unit increase	Affymetrix [323858] (imputed)	N
671	chr8	11333352	11333353	rs936546	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	FAM167A	rs936546-T	NR	3E-12		0.0223019	[0.016-0.029] unit increase	Affymetrix [127266] (imputed)	N
671	chr8	11333352	11333353	rs936546	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	FAM167A	rs936546-T	NR	7E-9		0.0182281	[0.012-0.024] unit increase	Affymetrix [321114] (imputed)	N
671	chr8	11333352	11333353	rs936546	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	8p23.1	FAM167A	rs936546-T	NR	1E-8		0.0166498	[0.011-0.022] unit increase	Affymetrix [321169] (imputed)	N
671	chr8	11333352	11333353	rs936546	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	8p23.1	FAM167A	rs936546-T	NR	1E-9		0.0191225	[0.013-0.025] unit increase	Affymetrix [323858] (imputed)	N
671	chr8	11333520	11333521	rs17799348	26362759	Rothwell S	2015-09-11	Ann Rheum Dis	Dense genotyping of immune-related loci in idiopathic inflammatory myopathies confirms HLA alleles as the strongest genetic risk factor and suggests different genetic background for major clinical subgroups.	Polymyositis	931 European ancestry cases, 15,651 European ancestry controls		8p23.1	FAM167A, BLK	rs17799348-?	0.61	4E-6		1.25		Illumina [90536]	N
671	chr8	11335241	11335242	rs11775149	30894546	Ivarsdottir EV	2019-03-20	Nat Commun	Sequence variation at ANAPC1 accounts for 24% of the variability in corneal endothelial cell density.	Corneal endothelial cell size variation coefficient	6,125 Icelandic ancestry individuals	NA	8p23.1	NR	rs11775149-A		2E-7		0.101	[NR] unit decrease	Illumina [NR]	N
671	chr8	11336780	11336781	rs756038	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8p23.1	FAM167A	rs756038-G	NR	9E-13		0.0206441	[0.015-0.026] unit decrease	Affymetrix [321114] (imputed)	N
671	chr8	11337586	11337587	rs2409780	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Non-albumin protein levels	98,538 Japanese ancestry individuals	NA	8p23.1	FAM167A, BLK	rs2409780-?	NR	1E-15		0.04456	[0.034-0.055] unit increase novel	Illumina [6108953] (imputed)	N
671	chr8	11337586	11337587	rs2409780	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Albumin-globulin ratio	98,626 Japanese ancestry individuals	NA	8p23.1	FAM167A, BLK	rs2409780-?	NR	1E-16		0.04604	[0.035-0.057] unit decrease novel	Illumina [6108953] (imputed)	N
671	chr8	11338145	11338146	rs1531576	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	8p23.1	NR	rs1531576-G	0.586946	3E-11		0.0440709	[0.031-0.058] unit decrease	Affymetrix [17914406] (imputed)	N
671	chr8	11338369	11338370	rs2618444	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Rheumatoid arthritis	8,255 European ancestry cases, 409,001 European ancestry controls, 5,348 East Asian ancestry cases, 173,268 East Asian ancestry controls	NA	8p23.1		rs2618444-C	NR	7E-12		0.1005	[0.072-0.129] unit increase	Affymetrix, Illumina [25835038] (imputed)	N
671	chr8	11338369	11338370	rs2618444	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	8p23.1	BLK	rs2618444-?	NR	7E-9	(AA)	1.36	[1.22-1.51]	Illumina [at least 5000000] (imputed)	N
671	chr8	11338465	11338466	rs35393613	33772158	Hoggart C	2021-03-26	Eur J Hum Genet	Identification of novel locus associated with coronary artery aneurysms and validation of loci for susceptibility to Kawasaki disease.	Kawasaki disease	400 European ancestry cases, 6,101 European ancestry controls	346 European ancestry cases, 1,609 European ancestry controls	8p23.1	FAM167A, BLK	rs35393613-T	NR	5E-13		1.51	[1.35-1.688]	Illumina [5784964] (imputed)	N
671	chr8	11339881	11339882	rs2061831	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	8p23.1	BLK	rs2061831-?	NR	1E-40		1.31	[1.25-1.37]	Illumina [at least 5000000] (imputed)	N
671	chr8	11339964	11339965	rs2736332	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	8p23.1	BLK	rs2736332-C	0.734	2E-70		1.36	[1.33-1.39]	Illumina [11270530] (imputed)	N
671	chr8	11339964	11339965	rs2736332	27399966	Morris DL	2016-07-11	Nat Genet	Genome-wide association meta-analysis in Chinese and European individuals identifies ten new loci associated with systemic lupus erythematosus.	Systemic lupus erythematosus	1,659 Chinese ancestry cases, 3,398 Chinese ancestry controls, 4,036 European ancestry cases, 6,959 European ancestry controls	3,043 Chinese ancestry cases, 5,074 Chinese ancestry controls, 2,643 European ancestry cases, 9,032 European ancestry controls	8p23.1	BLK	rs2736332-?	0.718	3E-14	(Chinese)	1.5	[NR]	NR [6344733] (imputed)	N
671	chr8	11339964	11339965	rs2736332	27399966	Morris DL	2016-07-11	Nat Genet	Genome-wide association meta-analysis in Chinese and European individuals identifies ten new loci associated with systemic lupus erythematosus.	Systemic lupus erythematosus	1,659 Chinese ancestry cases, 3,398 Chinese ancestry controls, 4,036 European ancestry cases, 6,959 European ancestry controls	3,043 Chinese ancestry cases, 5,074 Chinese ancestry controls, 2,643 European ancestry cases, 9,032 European ancestry controls	8p23.1	BLK	rs2736332-?	0.273	5E-18	(EA)	1.32	[NR]	NR [6344733] (imputed)	N
671	chr8	11339964	11339965	rs2736332	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	NA	8p23.1	BLK	rs2736332-C		2E-22		1.31	[NR]	Illumina [> 644674] (imputed)	N
671	chr8	11340180	11340181	rs7812879	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	Systemic lupus erythematosus	1,639 East Asian ancestry cases, 2,410 East Asian ancestry controls	NA	8p23.1	NR	rs7812879-A	NR	5E-14				Illumina [NR] (imputed)	N
671	chr8	11340180	11340181	rs7812879	19838193	Han JW	2009-10-18	Nat Genet	Genome-wide association study in a Chinese Han population identifies nine new susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	1,047 Han Chinese ancestry cases, 1,205 Han Chinese ancestry controls	3,152 Han Chinese ancestry cases, 7,050 Han Chinese ancestry controls	8p23.1	BLK	rs7812879-G	0.76	2E-24		1.45	[1.35-1.56]	Illumina [493955]	N
671	chr8	11341869	11341870	rs2736336	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls	NA	8p23.1	BLK	rs2736336-?	NR	6E-32		1.34	[1.28-1.41]	Illumina [at least 5000000] (imputed)	N
671	chr8	11341879	11341880	rs2736337	30573655	Acosta-Herrera M	2018-12-20	Ann Rheum Dis	Genome-wide meta-analysis reveals shared new loci in systemic seropositive rheumatic diseases.	Systemic seropositive rheumatic diseases (Systemic sclerosis or systemic lupus erythematosus or rheumatoid arthritis or idiopathic inflammatory myopathies)	up to 4,595 European ancestry rheumatoid arthritis cases, up to 3,154 European ancestry systemic lupus erythematosus cases, up to 2,281 European ancestry systemic sclerosis cases, up to 1,674 European ancestry idiopathic inflammatory myopathy cases, 19,704 European ancestry controls	NA	8p23.1	FAM167A-BLK	rs2736337-C	NR	5E-22		1.23	[1.17-1.30]	Illumina [6450125] (imputed)	N
671	chr8	11341879	11341880	rs2736337	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	8p23.1	BLK	rs2736337-T	NR	4E-13		0.129108	[0.065-0.193] unit decrease	Illumina [8380626] (imputed)	N
671	chr8	11341879	11341880	rs2736337	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	8p23.1	BLK	rs2736337-T	0.75	2E-7	(EA)	0.09221	[0.058-0.127] unit decrease	Illumina [8380626] (imputed)	N
671	chr8	11341879	11341880	rs2736337	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	8p23.1	BLK	rs2736337-T	0.33	2E-6	(East Asian)	0.13637	[0.08-0.193] unit decrease	Illumina [8380626] (imputed)	N
671	chr8	11341879	11341880	rs2736337	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	8p23.1	BLK	rs2736337-C	0.67	2E-7	(East Asian)	1.15	[1.09-1.22]	Affymetrix, Illumina [up to 9739303] (imputed)	N
671	chr8	11341879	11341880	rs2736337	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	8p23.1	BLK	rs2736337-C	0.36	3E-13		1.11	[1.08-1.14]	Affymetrix, Illumina [up to 9739303] (imputed)	N
671	chr8	11341879	11341880	rs2736337	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	8p23.1	BLK	rs2736337-C	0.25	8E-8	(EA)	1.09	[1.06-1.13]	Affymetrix, Illumina [up to 9739303] (imputed)	N
671	chr8	11343679	11343680	rs2254546	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	Systemic lupus erythematosus	1,639 East Asian ancestry cases, 2,410 East Asian ancestry controls	NA			rs2254546-G	NR	5E-20		0.4152	[0.33-0.5] unit increase	Illumina [NR] (imputed)	N
671	chr8	11343679	11343680	rs2254546	23273568	Yang W	2012-12-27	Am J Hum Genet	Meta-analysis followed by replication identifies loci in or near CDKN1B, TET3, CD80, DRAM1, and ARID5B as associated with systemic lupus erythematosus in Asians.	Systemic lupus erythematosus	1,656 Han Chinese ancestry cases, 3,394 Han Chinese ancestry controls	3,256 Han Chinese ancestry cases, 5,667 Han Chinese ancestry controls, 453 Thai ancestry cases, 963 Thai ancestry controls		BLK	rs2254546-G	0.73	2E-13		1.4925		Illumina [2100739] (imputed)	N
671	chr8	11343679	11343680	rs2254546	22446962	Onouchi Y	2012-03-25	Nat Genet	A genome-wide association study identifies three new risk loci for Kawasaki disease.	Kawasaki disease	428 Japanese ancestry cases, 3,379 Japanese ancestry controls	754 Japanese ancestry cases, 947 Japanese ancestry controls		FAM167A, BLK	rs2254546-G	0.72	8E-21		1.85	[1.54-2.23]	Illumina [463793]	N
671	chr8	11343972	11343973	rs2736340	33106546	Johnson TA	2020-10-26	J Hum Genet	Association of an IGHV3-66 gene variant with Kawasaki disease.	Kawasaki disease	1,276 East Asian ancestry cases, 5,086 East Asian ancestry controls	2,152 East Asian ancestry cases, 2,751 East Asian ancestry controls	8p23.1	BLK	rs2736340-T	NR	7E-33		1.55	[1.44-1.66]	Affymetrix, Illumina [6265045] (imputed)	N
671	chr8	11343972	11343973	rs2736340	31672989	Lopez-Isac E	2019-10-31	Nat Commun	GWAS for systemic sclerosis identifies multiple risk loci and highlights fibrotic and vasculopathy pathways.	Systemic sclerosis	9,095 European ancestry cases, 17,584 European ancestry controls	NA	8p23.1	FAM167A, BLK	rs2736340-T	0.24	3E-21		1.24		Illumina [4723365]	N
671	chr8	11343972	11343973	rs2736340	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	8p23.1		rs2736340-?	NR	3E-29		0.0269985	[0.022-0.032] unit decrease	Affymetrix [20259828] (imputed)	N
671	chr8	11343972	11343973	rs2736340	27193031	Marquez A	2016-05-18	Ann Rheum Dis	A combined large-scale meta-analysis identifies COG6 as a novel shared risk locus for rheumatoid arthritis and systemic lupus erythematosus.	Systemic lupus erythematosus or rheumatoid arthritis	2,237 European ancestry systemic lupus erythematosus cases, 3,911 European ancestry rheumatoid arthritis cases, 10,398 European ancestry controls	1,957 European ancestry systemic lupus erythematosus cases, 13,641 European ancestry rheumatoid arthritis cases, 36,509 European ancestry controls	8p23.1	BLK	rs2736340-?		9E-12	(same effect)	1.21	[NR]	NR [at least 309839] (imputed)	N
671	chr8	11343972	11343973	rs2736340	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	2,018 European ancestry cases, 6,925 European ancestry controls	8p23.1	BLK	rs2736340-T		6E-20		1.29	[1.22-1.37]	Illumina [644674]	N
671	chr8	11343972	11343973	rs2736340	23740937	Martin JE	2013-06-10	Hum Mol Genet	A systemic sclerosis and systemic lupus erythematosus pan-meta-GWAS reveals new shared susceptibility loci.	Systemic lupus erythematosus and Systemic sclerosis	up to 2,761 European ancestry systemic sclerosis cases, 769 European ancestry systemic lupus erythematosus cases, 7,381 European ancestry controls	up to 1,578 European ancestry systemic sclerosis cases, 1,727 European ancestry systemic lupus erythematosus cases, 6,893 European ancestry controls	8p23.1	BLK	rs2736340-?	NR	1E-8		1.217	[NR]	Illumina [NR]	N
671	chr8	11343972	11343973	rs2736340	22446961	Lee YC	2012-03-25	Nat Genet	Two new susceptibility loci for Kawasaki disease identified through genome-wide association analysis.	Kawasaki disease	622 Han Chinese ancestry cases, 1,107 Han Chinese ancestry controls	261 Han Chinese ancestry cases, 550 Han Chinese ancestry controls	8p23.1	BLK	rs2736340-T	0.722	9E-10		1.538	[1.338-1.767]	Affymetrix [716935]	N
671	chr8	11343972	11343973	rs2736340	21408207	Chung SA	2011-03-03	PLoS Genet	Differential genetic associations for systemic lupus erythematosus based on anti-dsDNA autoantibody production.	Systemic lupus erythematosus	811 anti-dsDNA positive European ancestry cases, 906 anti-dsDNA negative European ancestry cases, 4,813 European ancestry controls	NA	8p23.1	BLK	rs2736340-T	0.23	3E-7	(anti-dsDNA +)	1.38	[1.23-1.56]	Illumina [421318] (imputed)	N
671	chr8	11343972	11343973	rs2736340	19838195	Gateva V	2009-11-01	Nat Genet	A large-scale replication study identifies TNIP1, PRDM1, JAZF1, UHRF1BP1 and IL10 as risk loci for systemic lupus erythematosus.	Systemic lupus erythematosus	1,310 European ancestry cases, 7,859 European ancestry controls	1,963 European ancestry cases, 4,329 European ancestry controls	8p23.1	BLK	rs2736340-T	0.25	8E-17		1.35	[1.27-1.43]	Illumina [~ 2100000] (imputed)	N
671	chr8	11343972	11343973	rs2736340	19503088	Gregersen PK	2009-06-07	Nat Genet	REL, encoding a member of the NF-kappaB family of transcription factors, is a newly defined risk locus for rheumatoid arthritis.	Rheumatoid arthritis	2,418 European ancestry cases, 4,504 European ancestry controls	2,604 cases, 2,882 controls	8p23.1	BLK	rs2736340-A	0.24	6E-9		1.19	[1.13-1.27]	Illumina [278502]	N
671	chr8	11345544	11345545	rs4840565	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis	up to 13,838 European ancestry cases, up to 33,742 European ancestry controls	NA	8p23.1	BLK	rs4840565-G	0.34	4E-6		1.0987		Illumina [129464] (imputed)	N
671	chr8	11345643	11345644	rs1600252	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	8p23.1	BLK	rs1600252-A	NR	6E-11		0.0187198	[0.013-0.024] unit decrease	Affymetrix [321169] (imputed)	N
671	chr8	11348960	11348961	rs9693589	33310728	Ha E	2020-12-11	Ann Rheum Dis	Large-scale meta-analysis across East Asian and European populations updated genetic architecture and variant-driven biology of rheumatoid arthritis, identifying 11 novel susceptibility loci.	Rheumatoid arthritis	14,361 European ancestry cases, 43,923 European ancestry controls, 8,267 East Asian ancestry cases, 244,741 East Asian ancestry controls	NA	8p23.1		rs9693589-A	NR	2E-18		1.12	[1.09-1.15]	NR [13810676] (imputed)	N
671	chr8	11349185	11349186	rs13277113	32771030	Tangtanatakul P	2020-08-08	Arthritis Res Ther	Meta-analysis of genome-wide association study identifies FBN2 as a novel locus associated with systemic lupus erythematosus in Thai population.	Systemic lupus erythematosus	487 Thai cases, 1,606 Thai controls	405 Thai cases, 1,590 Thai controls	8p23.1	FAM167A, BLK	rs13277113-G	0.32	2E-9		0.6838	[NR]	Illumina [421909] (imputed)	N
671	chr8	11349185	11349186	rs13277113	23053960	Lee YH	2012-10-07	Mol Biol Rep	Genome-wide pathway analysis of genome-wide association studies on systemic lupus erythematosus and rheumatoid arthritis.	Systemic lupus erythematosus	1,527 European ancestry cases, 3,421 European ancestry controls,	NA	8p23.1	BLK	rs13277113-A	NR	2E-10		1.391	[1.256-1.540]	Illumina [737984]	N
671	chr8	11349185	11349186	rs13277113	18204098	Hom G	2008-01-20	N Engl J Med	Association of systemic lupus erythematosus with C8orf13-BLK and ITGAM-ITGAX.	Systemic lupus erythematosus	1,311 European ancestry cases, 3,340 European ancestry controls	793 European ancestry cases, 857 European ancestry controls	8p23.1	C8orf13, BLK	rs13277113-A	0.23	1E-10		1.39	[1.28-1.51]	Illumina [502033]	N
671	chr8	11351018	11351019	rs4840568	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	8p23.1		rs4840568-A	NR	4E-33		0.0281	[0.024-0.033] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
671	chr8	11351219	11351220	rs1382568	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	8p23.1		rs1382568-?	NR	2E-35		0.0308596	[0.026-0.036] unit increase	Affymetrix [20259828] (imputed)	N
671	chr8	11351911	11351912	rs922483	24532676	Kim K	2014-02-14	Ann Rheum Dis	High-density genotyping of immune loci in Koreans and Europeans identifies eight new rheumatoid arthritis risk loci.	Rheumatoid arthritis (ACPA-positive)	2,234 Korean ancestry cases, 7,065 Korean ancestry controls, 10,288 European ancestry cases, 35,502 European ancestry controls	NA	8p23.1	BLK	rs922483-A	0.71	2E-7		1.098901	[1.06-1.14]	Illumina [133816] (imputed)	N
671	chr8	11352484	11352485	rs2736345	26663301	Lessard CJ	2016-05-01	Arthritis Rheumatol	Identification of a Systemic Lupus Erythematosus Risk Locus Spanning ATG16L2, FCHSD2, and P2RY2 in Koreans.	Systemic lupus erythematosus	1,174 Korean ancestry cases, 4,246 Korean ancestry controls	739 Korean ancestry cases,  677 Chinese ancestry cases,  436 Korean ancestry controls, 709 Chinese ancestry controls	8p23.1	BLK	rs2736345-?	NR	8E-11		1.4285715	[1.28-1.59]	Illumina [NR]	N
671	chr8	11352484	11352485	rs2736345	24097067	Lessard CJ	2013-11-01	Nat Genet	Variants at multiple loci implicated in both innate and adaptive immune responses are associated with Sjogren's syndrome.	Sjogren's syndrome	395 European ancestry cases, 1,975 European ancestry controls	1,243 European ancestry cases, 4,779 European ancestry controls	8p23.1	BLK	rs2736345-G	0.29	5E-10		1.3	[1.16-1.47]	Illumina [648937]	N
671	chr8	11352540	11352541	rs2618476	19165918	Graham RR	2008-08-01	Nat Genet	Genetic variants near TNFAIP3 on 6q23 are associated with systemic lupus erythematosus.	Systemic lupus erythematosus	431 European ancestry cases, 2,155 European ancestry controls	447 European ancestry trios, 293 trios	8p23.1	BLK	rs2618476-?	0.26	2E-8		1.29	[NR]	Affymetrix [313238]	N
671	chr8	11352999	11353000	rs998683	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	BLK	rs998683-A	NR	1E-8		0.0201836	[0.013-0.027] unit decrease	Affymetrix [323858] (imputed)	N
671	chr8	11352999	11353000	rs998683	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	BLK	rs998683-A	NR	3E-9		0.0210102	[0.014-0.028] unit decrease	Affymetrix [127266] (imputed)	N
671	chr8	11352999	11353000	rs998683	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	BLK	rs998683-G	NR	2E-9		0.010466	[0.007-0.0139] unit decrease	Affymetrix [18485882] (imputed)	N
671	chr8	11354932	11354933	rs4606022	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	BLK	rs4606022-G	NR	4E-8		0.0178221	[0.011-0.024] unit increase	Affymetrix [127266] (imputed)	N
671	chr8	11359111	11359112	rs2736346	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Systemic sclerosis	3,477 European ancestry cases, 22,308 European ancestry controls	NA	8p23.1	BLK	rs2736346-A	0.245	2E-12		1.3051527		Illumina [252970]	N
671	chr8	11359556	11359557	rs2409781	29293537	Gorlova OY	2018-01-02	PLoS One	Gene-level association analysis of systemic sclerosis: A comparison of African-Americans and White populations.	Systemic sclerosis	1,833 European ancestry cases, 3,466 European ancestry controls, 291 African American cases, 260 African American controls	NA	8p23.1	BLK	rs2409781-?	NR	3E-8	(EA)			Illumina [126270]	N
671	chr8	11359637	11359638	rs1600249	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	8p23.1	NR	rs1600249-T	NR	6E-11		0.0185	[0.013-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
671	chr8	11359637	11359638	rs1600249	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	8p23.1	NR	rs1600249-T	NR	1E-17		0.0252	[0.019-0.031] unit increase	Affymetrix [9000000] (imputed)	N
671	chr8	11359637	11359638	rs1600249	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	8p23.1	NR	rs1600249-T	NR	3E-24		0.0287	[0.023-0.034] unit increase	Affymetrix [9000000] (imputed)	N
671	chr8	11359637	11359638	rs1600249	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	8p23.1	NR	rs1600249-T	NR	1E-27		0.0322	[0.027-0.038] unit increase	Affymetrix [9000000] (imputed)	N
671	chr8	11359637	11359638	rs1600249	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	8p23.1	NR	rs1600249-T	NR	1E-11		0.019	[0.014-0.024] unit increase	Affymetrix [9000000] (imputed)	N
671	chr8	11359637	11359638	rs1600249	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	8p23.1	NR	rs1600249-T	NR	1E-11		0.019	[0.014-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
671	chr8	11359637	11359638	rs1600249	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	8p23.1	NR	rs1600249-T	NR	3E-18		0.0246	[0.019-0.03] unit increase	Affymetrix [9000000] (imputed)	N
671	chr8	11359637	11359638	rs1600249	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	8p23.1	NR	rs1600249-T	NR	4E-11		0.0186	[0.013-0.024] unit increase	Affymetrix [9000000] (imputed)	N
671	chr8	11359637	11359638	rs1600249	21452313	Freudenberg J	2011-04-01	Arthritis Rheum	Genome-wide association study of rheumatoid arthritis in Koreans: population-specific loci as well as overlap with European susceptibility loci.	Rheumatoid arthritis	801 Korean ancestry cases, 757 Korean ancestry controls	718 Korean ancestry cases, 719 Korean ancestry controls	8p23.1	BLK	rs1600249-?		5E-6		1.3	[1.16-1.45]	Illumina [441398]	N
671	chr8	11360044	11360045	rs1585729	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8p23.1	BLK	rs1585729-C	NR	1E-8		0.0172411	[0.011-0.023] unit decrease	Affymetrix [321114] (imputed)	N
671	chr8	11362271	11362272	rs10100215	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8p23.1	BLK	rs10100215-T	NR	3E-9		0.0189166	[0.013-0.025] unit decrease	Affymetrix [321114] (imputed)	N
671	chr8	11362271	11362272	rs10100215	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	BLK	rs10100215-G	NR	9E-9		0.01001	[0.0066-0.0134] unit decrease	Affymetrix [18485882] (imputed)	N
671	chr8	11362276	11362277	rs12155745	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Depression	at least 5,919 European ancestry cases, at least 130,691 European ancestry controls	634,037 European ancestry cases, 1,308,690 European ancestry controls	8p23.1	BLK	rs12155745-G	0.4672	9E-9		0.013005675	[0.0079-0.0181] unit decrease	NR [9417325] (imputed)	N
671	chr8	11362276	11362277	rs12155745	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	BLK	rs12155745-G	NR	5E-17		0.014639	[0.011-0.018] unit increase	Affymetrix [18485882] (imputed)	N
671	chr8	11362276	11362277	rs12155745	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	8p23.1	NR	rs12155745-T	NR	4E-8		5.508	z score increase	Affymetrix [10847151] (imputed)	N
671	chr8	11363783	11363784	rs2280805	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	BLK	rs2280805-T	NR	1E-9		0.0226289	[0.015-0.03] unit decrease	Affymetrix [323858] (imputed)	N
671	chr8	11363783	11363784	rs2280805	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	BLK	rs2280805-T	NR	4E-10		0.0232416	[0.016-0.031] unit decrease	Affymetrix [127266] (imputed)	N
671	chr8	11369235	11369236	rs4841545	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	BLK	rs4841545-C	NR	3E-8		0.0184518	[0.012-0.025] unit increase	Affymetrix [127266] (imputed)	N
671	chr8	11372636	11372637	rs12677903	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	BLK	rs12677903-C	NR	3E-9		0.0212967	[0.014-0.028] unit decrease	Affymetrix [321114] (imputed)	N
671	chr8	11376265	11376266	rs2618451	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8p23.1	BLK	rs2618451-C	NR	8E-9		0.0169292	[0.011-0.023] unit decrease	Affymetrix [321114] (imputed)	N
671	chr8	11376265	11376266	rs2618451	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	BLK	rs2618451-T	NR	1E-12		0.012487	[0.0091-0.0159] unit decrease	Affymetrix [18485882] (imputed)	N
671	chr8	11381186	11381187	rs2618445	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	BLK	rs2618445-C	NR	2E-8		0.0180999	[0.012-0.024] unit increase	Affymetrix [127266] (imputed)	N
671	chr8	11385117	11385118	rs2736364	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	BLK	rs2736364-T	NR	5E-8		0.0174043	[0.011-0.024] unit increase	Affymetrix [127266] (imputed)	N
671	chr8	11388448	11388449	rs2264306	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	BLK	rs2264306-G	NR	2E-9		0.010386	[0.007-0.0138] unit increase	Affymetrix [18485882] (imputed)	N
671	chr8	11388498	11388499	rs12548884	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8p23.1	BLK	rs12548884-T	NR	3E-9		0.0180383	[0.012-0.024] unit increase	Affymetrix [321114] (imputed)	N
671	chr8	11392536	11392537	rs75867350	31497858	Dumitrescu L	2019-09-01	Brain	Sex differences in the genetic predictors of Alzheimer's pathology.	Neurofibrillary tangles	2,701 European ancestry men	NA	8p23.1	BLK	rs75867350-C	0.011916	2E-7		1.471259	[0.92-2.02] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
671	chr8	11393744	11393745	rs2248700	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	BLK	rs2248700-G	NR	2E-10		0.0209289	[0.014-0.027] unit decrease	Affymetrix [323858] (imputed)	N
671	chr8	11393744	11393745	rs2248700	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	BLK	rs2248700-G	NR	7E-11		0.0215479	[0.015-0.028] unit decrease	Affymetrix [127266] (imputed)	N
671	chr8	11393763	11393764	rs2248699	27089180	Day FR	2016-04-18	Nat Genet	Physical and neurobehavioral determinants of reproductive onset and success.	Age at first sexual intercourse	59,357 British ancestry males, 66,310 British ancestry females	NA	8p23.1	BLK	rs2248699-G	0.5017130000000001	4E-10		0.0241414	[0.017-0.032] unit increase	Affymetrix [641018] (imputed)	N
671	chr8	11395078	11395079	rs1478898	26835600	Hu Y	2016-02-02	Nat Commun	GWAS of 89,283 individuals identifies genetic variants associated with self-reporting of being a morning person.	Morning vs. evening chronotype	38,937 European ancestry morning chronotype individuals, 50,346 European ancestry evening chronotype individuals	NA	8p23.1	NR	rs1478898-?	NR	1E-6				Illumina [7427422] (imputed)	N
671	chr8	11395231	11395232	rs1478897	26316170	Demirci FY	2015-08-28	Arthritis Rheumatol	Identification of a New Susceptibility Locus for Systemic Lupus Erythematosus on Chromosome 12 in Individuals of European Ancestry.	Systemic lupus erythematosus	661 European ancestry cases, 487 European ancestry controls	4,467 European ancestry cases, 9,114 European ancestry controls	8p23.1	FAM167A, BLK, XKR6, PINX1, MTMR9, SLC35G5, TDH, C8orf12, LINC00208	rs1478897-T	0.337	8E-6		1.56	[NR]	Affymetrix [up to 700598]	N
671	chr8	11396873	11396874	rs2248325	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Phosphatidylcholine levels	2,045 European ancestry individuals	NA	8p23.1	BLK	rs2248325-G	NR	3E-8	(PC(16:0;0-16:0;0))	0.1738	[0.11-0.23] unit increase	Illumina [~ 9300000] (imputed)	N
671	chr8	11398182	11398183	rs9657551	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	8p23.1	BLK	rs9657551-G	NR	6E-9		0.0191519	[0.013-0.026] unit decrease	Affymetrix [323858] (imputed)	N
671	chr8	11398952	11398953	rs2467520	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	BLK	rs2467520-T	NR	1E-12		0.0219892	[0.016-0.028] unit decrease	Affymetrix [321114] (imputed)	N
671	chr8	11398952	11398953	rs2467520	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	8p23.1	BLK	rs2467520-T	NR	3E-12		0.0215906	[0.016-0.028] unit decrease	Affymetrix [323858] (imputed)	N
671	chr8	11402062	11402063	rs7828916	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	BLK	rs7828916-G	NR	1E-8		0.0184521	[0.012-0.025] unit decrease	Affymetrix [321114] (imputed)	N
672	chr8	11403768	11403769	rs2244931	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	8p23.1	NR	rs2244931-G	NR	1E-9		0.0147	[0.01-0.0194] unit decrease	Affymetrix [9000000] (imputed)	N
672	chr8	11403768	11403769	rs2244931	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	8p23.1	NR	rs2244931-G	NR	2E-24		0.0247	[0.02-0.029] unit increase	Affymetrix [9000000] (imputed)	N
672	chr8	11409991	11409992	rs2255327	22610502	Kennedy RB	2012-05-19	Hum Genet	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune response to smallpox vaccine (IL-6)	Up to 512 European ancestry individuals, 199 African American individuals	NA	8p23.1	BLK	rs2255327-A		3E-7	(AA)			Illumina [NR]	N
672	chr8	11413191	11413192	rs73195298	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	8p23.1	NR	rs73195298-C	NR	5E-12		0.0249	[0.018-0.032] unit increase	Affymetrix [9000000] (imputed)	N
672	chr8	11414658	11414659	rs17153454	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	8p23.1	NR	rs17153454-A	NR	5E-19		0.0255	[0.02-0.031] unit decrease	Affymetrix [9000000] (imputed)	N
672	chr8	11416642	11416643	rs11785335	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	8p23.1	BLK	rs11785335-A	0.456	1E-8		0.0068	[0.0044-0.0092] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
672	chr8	11417492	11417493	rs10098664	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	8p23.1	BLK	rs10098664-T	0.4859	9E-12		0.0021	[0.0015-0.0027] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
672	chr8	11417492	11417493	rs10098664	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	8p23.1	BLK	rs10098664-T	0.5102	4E-13		0.0024	[0.0016-0.0032] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
672	chr8	11421320	11421321	rs13248757	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	8p23.1	BLK	rs13248757-T	0.7612	6E-9		0.016130963	[0.011-0.022] unit decrease	Affymetrix [11515109] (imputed)	N
672	chr8	11423071	11423072	rs12541800	34753499	Hanscombe KB	2021-11-09	Genome Med	The genetic case for cardiorespiratory fitness as a clinical vital sign and the routine prescription of physical activity in healthcare.	Cardiorespiratory fitness slope	70,783 European ancestry individuals	NA	8p23.1		rs12541800-A	0.52	5E-8		0.006	[0.004-0.008] unit increase	Affymetrix [8918919] (imputed)	N
672	chr8	11423071	11423072	rs12541800	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting insulin	151,013 European ancestry individuals	NA	8p23.1	BLK	rs12541800-A	0.4902	6E-7		0.0105	[0.0066-0.0144] unit increase	Affymetrix, Illumina [32635793] (imputed)	N
672	chr8	11430484	11430485	rs899366	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption interaction (2df test)	91,110 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	237,996 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,315 European ancestry non-drinkers, 2,761 African ancestry non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	8p23.1	LINC00208	rs899366-A	0.33	2E-82	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
672	chr8	11433779	11433780	rs2409797	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	8p23.1	NR	rs2409797-C	0.540638682420715	3E-29		0.020931683	[0.017-0.025] unit increase	NR [NR]	N
672	chr8	11433779	11433780	rs2409797	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	8p23.1	intergenic	rs2409797-T	0.46977	5E-30		11.393	z score decrease	Illumina [18485882] (imputed)	N
672	chr8	11433779	11433780	rs2409797	27527254	Gharahkhani P	2016-08-12	Lancet Oncol	Genome-wide association studies in oesophageal adenocarcinoma and Barrett's oesophagus: a large-scale meta-analysis.	Barrett's esophagus	6,167 European ancestry cases, 17,159 European ancestry controls	NA	8p23.1	LINC00208, BLK	rs2409797-T		3E-9		1.1394	[1.1-1.18]	Illumina [11942825] (imputed)	N
672	chr8	11433908	11433909	rs2898290	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure (cigarette smoking interaction)	80,552 European ancestry individuals, 27,118 African individuals, 13,438 Asian individuals, 8,805 Hispanic individuals	305,513 European ancestry individuals, 7,786 African individuals, 148,932 Asian individuals, 13,533 Hispanic individuals, 4,414 Brazilian individuals	8p23.1	BLK, GATA4	rs2898290-?	NR	1E-22				Affymetrix, Illumina [18800000] (imputed)	N
672	chr8	11433908	11433909	rs2898290	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure (cigarette smoking interaction)	80,552 European ancestry individuals, 27,118 African individuals, 13,438 Asian individuals, 8,805 Hispanic individuals	305,513 European ancestry individuals, 7,786 African individuals, 148,932 Asian individuals, 13,533 Hispanic individuals, 4,414 Brazilian individuals	8p23.1	BLK, GATA4	rs2898290-?		6E-13				Affymetrix, Illumina [18800000] (imputed)	N
672	chr8	11433908	11433909	rs2898290	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Systolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	8p23.1	BLK, GATA4	rs2898290-C	0.525	6E-8	(EA, initial)	0.39	[0.25-0.53] unit decrease	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
672	chr8	11433908	11433909	rs2898290	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	8p23.1	BLK, LINC00208	rs2898290-T		4E-6		0.26	unit increase	Affymetrix [at least 2696785] (imputed)	N
672	chr8	11433908	11433909	rs2898290	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	8p23.1	BLK, LINC00208	rs2898290-T		4E-14		0.294	unit increase	Affymetrix [at least 2696785] (imputed)	N
672	chr8	11433908	11433909	rs2898290	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	8p23.1	BLK, LINC00208	rs2898290-T		6E-9		0.151	unit increase	Affymetrix [at least 2696785] (imputed)	N
672	chr8	11433908	11433909	rs2898290	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	8p23.1	BLK, LINC00208	rs2898290-T		3E-9		0.14	unit increase	Affymetrix [at least 2696785] (imputed)	N
672	chr8	11433908	11433909	rs2898290	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Systolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	8p23.1	BLK, GATA4	rs2898290-T	0.491	9E-11		0.377	[0.26-0.49] mm Hg increase	Affymetrix, Illumina, Perlegen [128272]	N
672	chr8	11433908	11433909	rs2898290	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Diastolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	8p23.1	BLK, GATA4	rs2898290-T	0.491	3E-6		0.167	[0.096-0.238] mm Hg increase	Affymetrix, Illumina, Perlegen [128272]	N
672	chr8	11434175	11434176	rs7464263	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8p23.1	NR	rs7464263-T	0.455226	3E-13				Affymetrix, Illumina [19905671] (imputed)	N
672	chr8	11434415	11434415	rs111613945	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta maximum area	31,908 individuals	NA	8p23.1		rs111613945-C	0.468351	9E-12		0.0508298	[0.036-0.066] increase	Affymetrix [NR]	N
672	chr8	11434928	11434929	rs2127128	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	LINC00208	rs2127128-C	NR	2E-9		0.010508	[0.0071-0.0139] unit increase	Affymetrix [18485882] (imputed)	N
672	chr8	11435291	11435291	rs140471203	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	8p23.1		rs140471203-G	0.472432	2E-23		0.0387295	[0.031-0.046] unit increase	NR [11722792] (imputed)	N
672	chr8	11435291	11435291	rs140471203	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	8p23.1		rs140471203-G	0.472434	6E-14		0.0306372	[0.023-0.039] unit increase	NR [11722792] (imputed)	N
672	chr8	11435291	11435291	rs140471203	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	8p23.1	NR	rs140471203-I	0.526056	1E-32		0.024531	[0.02-0.029] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
672	chr8	11435291	11435291	rs140471203	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	8p23.1	NR	rs140471203-I	0.526012	1E-31		0.024442	[0.02-0.029] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
672	chr8	11435515	11435516	rs10108511	34187846	Ong JS	2021-06-29	Gut	Multitrait genetic association analysis identifies 50 new risk loci for gastro-oesophageal reflux, seven new loci for Barrett's oesophagus and provides insights into clinical heterogeneity in reflux diagnosis.	Barrett's esophagus	13,358 European ancestry cases, 43,071 European ancestry controls	24,099 cases, 1,484,025 controls	8p23.1	NR	rs10108511-T	0.47	8E-9		0.087	unit increase	NR [2324712] (imputed)	N
672	chr8	11435515	11435516	rs10108511	27527254	Gharahkhani P	2016-08-12	Lancet Oncol	Genome-wide association studies in oesophageal adenocarcinoma and Barrett's oesophagus: a large-scale meta-analysis.	Barrett's esophagus  or Esophageal adenocarcinoma	6,167 European ancestry Barrett's oesophagus cases, 4,112 European ancestry esophageal adenocarcinoma cases, 17,159 European ancestry controls	NA	8p23.1	BLK, LINC00208	rs10108511-T		2E-9		1.12	[1.08-1.16]	Illumina [11951684] (imputed)	N
672	chr8	11438063	11438064	rs968179	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	LINC00208	rs968179-T	NR	5E-10		0.0209804	[0.014-0.028] unit decrease	Affymetrix [323858] (imputed)	N
672	chr8	11438063	11438064	rs968179	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	LINC00208	rs968179-T	NR	9E-11		0.0218208	[0.015-0.028] unit decrease	Affymetrix [127266] (imputed)	N
672	chr8	11440018	11440019	rs4841567	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	LINC00208	rs4841567-G	NR	1E-15		0.0251706	[0.019-0.031] unit decrease	Affymetrix [323858] (imputed)	N
672	chr8	11440018	11440019	rs4841567	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	LINC00208	rs4841567-G	NR	5E-17		0.0263771	[0.02-0.033] unit decrease	Affymetrix [127266] (imputed)	N
672	chr8	11440018	11440019	rs4841567	32581359	Saevarsdottir S	2020-06-24	Nature	FLT3 stop mutation increases FLT3 ligand level and risk of autoimmune thyroid disease.	Autoimmune thyroid disease	30,234 European ancestry cases, 724,172 European ancestry controls	NA	8p23.1	NR	rs4841567-A	0.519	1E-12		1.0638298	[NR]	Affymetrix, Illumina [42900000] (imputed)	N
672	chr8	11440018	11440019	rs4841567	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	8p23.1	NR	rs4841567-A	0.534309	4E-13		0.047934	[0.035-0.061] unit decrease	Affymetrix [17914406] (imputed)	N
672	chr8	11443203	11443204	rs4840572	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	8p23.1	GATA4	rs4840572-A	0.3018	3E-17		0.01785755	[0.014-0.022] unit increase	Illumina [9339358] (imputed)	N
672	chr8	11444836	11444837	rs13270267	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	8p23.1		rs13270267-T	0.458147	1E-11		0.01880854	[0.013-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
672	chr8	11447092	11447093	rs55896564	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls, 22,356 East Asian ancestry cases, 156,370 East Asian ancestry controls	NA	8p23.1		rs55896564-A	NR	5E-15		0.0621	[0.047-0.078] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
672	chr8	11447092	11447093	rs55896564	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		8p23.1	BLK	rs55896564-G	0.465195	3E-17		0.0116966	[0.009-0.0144] unit increase	Affymetrix [12370749]	N
672	chr8	11448658	11448659	rs2244894	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	LINC00208	rs2244894-G	NR	2E-9		0.0191842	[0.013-0.025] unit decrease	Affymetrix [321114] (imputed)	N
672	chr8	11448658	11448659	rs2244894	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	8p23.1	LINC00208	rs2244894-G	NR	1E-9		0.0177536	[0.012-0.024] unit decrease	Affymetrix [321169] (imputed)	N
672	chr8	11448658	11448659	rs2244894	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	8p23.1	LINC00208	rs2244894-G	NR	6E-10		0.0197017	[0.013-0.026] unit decrease	Affymetrix [323858] (imputed)	N
672	chr8	11448658	11448659	rs2244894	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Pulse pressure x alcohol consumption interaction (2df test)	91,099 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	238,053 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,447 Hispanic ancestry drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic ancestry non-drinkers	8p23.1	LINC00208	rs2244894-C	0.44	3E-15	(Asian, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
672	chr8	11449324	11449325	rs13274269	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	LINC00208	rs13274269-T	NR	9E-11		0.0215667	[0.015-0.028] unit decrease	Affymetrix [323858] (imputed)	N
672	chr8	11449324	11449325	rs13274269	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	LINC00208	rs13274269-T	NR	6E-12		0.0228638	[0.016-0.029] unit decrease	Affymetrix [127266] (imputed)	N
672	chr8	11450132	11450133	rs11995206	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	8p23.1	LINC00208	rs11995206-A	NR	2E-10		0.0185062	[0.013-0.024] unit decrease	Affymetrix [321169] (imputed)	N
672	chr8	11450736	11450737	rs12677146	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8p23.1	LINC00208	rs12677146-G	NR	1E-11		0.0203659	[0.014-0.026] unit decrease	Affymetrix [321114] (imputed)	N
672	chr8	11452176	11452177	rs4841569	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Pulse pressure x alcohol consumption (light vs heavy) interaction (2df test)	56,705 European ancestry heavy and light drinkers, 9,725 African American or Afro-Caribbean heavy and light drinkers, 1,789 Asian ancestry heavy and light drinkers, 4,812 Hispanic or Latin American heavy and light drinkers	42,079 European ancestry heavy drinkers, 217 African American heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic heavy drinkers, 74,756 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	8p23.1	LINC00208	rs4841569-A	0.42	5E-11	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
672	chr8	11452176	11452177	rs4841569	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure (cigarette smoking interaction)	80,552 European ancestry individuals, 27,118 African individuals, 13,438 Asian individuals, 8,805 Hispanic individuals	305,513 European ancestry individuals, 7,786 African individuals, 148,932 Asian individuals, 13,533 Hispanic individuals, 4,414 Brazilian individuals	8p23.1	BLK, GATA4	rs4841569-?	NR	6E-18				Affymetrix, Illumina [18800000] (imputed)	N
672	chr8	11452176	11452177	rs4841569	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure (cigarette smoking interaction)	80,552 European ancestry individuals, 27,118 African individuals, 13,438 Asian individuals, 8,805 Hispanic individuals	305,513 European ancestry individuals, 7,786 African individuals, 148,932 Asian individuals, 13,533 Hispanic individuals, 4,414 Brazilian individuals	8p23.1	BLK, GATA4	rs4841569-?		2E-10				Affymetrix, Illumina [18800000] (imputed)	N
672	chr8	11457247	11457248	rs35373084	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	LINC00208	rs35373084-T	NR	2E-10		0.0198247	[0.014-0.026] unit increase	Affymetrix [321114] (imputed)	N
672	chr8	11457247	11457248	rs35373084	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	8p23.1	LINC00208	rs35373084-T	NR	8E-10		0.0191492	[0.013-0.025] unit increase	Affymetrix [323858] (imputed)	N
672	chr8	11457247	11457248	rs35373084	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	LINC00208	rs35373084-T	NR	1E-10		0.011249	[0.0078-0.0147] unit decrease	Affymetrix [18485882] (imputed)	N
672	chr8	11459017	11459018	rs13249843	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	LINC00208	rs13249843-G	NR	2E-12		0.012273	[0.0088-0.0157] unit decrease	Affymetrix [18485882] (imputed)	N
672	chr8	11459017	11459018	rs13249843	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption interaction (2df test)	63,607 European ancestry drinkers, 10,193 African American or Afro-Caribbean drinkers, 2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,492 European ancestry non-drinkers, 11,223 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,058 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	8p23.1	LINC00208	rs13249843-T	0.3396	2E-13	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
672	chr8	11459017	11459018	rs13249843	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption interaction (2df test)	63,607 European ancestry drinkers, 10,193 African American or Afro-Caribbean drinkers, 2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,492 European ancestry non-drinkers, 11,223 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,058 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	8p23.1	LINC00208	rs13249843-T	0.33	3E-15	(EA, Hispanic)			Affymetrix, Illumina [up to 39321347] (imputed)	N
672	chr8	11461110	11461111	rs13273172	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls, 49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	8p23.1		rs13273172-G	NR	4E-9		0.0474	[0.032-0.063] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
672	chr8	11463014	11463015	rs17807624	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption (light vs heavy) interaction (2df test)	56,705 European ancestry heavy and light drinkers, 9,725 African American or Afro-Caribbean heavy and light drinkers, 1,789 Asian ancestry heavy and light drinkers, 4,812 Hispanic or Latin American heavy and light drinkers	42,077 European ancestry heavy drinkers, 217 African American heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic ancestry heavy drinkers, 74,701 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	8p23.1	LINC00208	rs17807624-T	0.35	3E-11	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
672	chr8	11463014	11463015	rs17807624	26606652	Alarcon-Riquelme ME	2015-11-25	Arthritis Rheumatol	Genome-Wide Association Study in an Amerindian Ancestry Population Reveals Novel Systemic Lupus Erythematosus Risk Loci and the Role of European Admixture.	Systemic lupus erythematosus	862 Native American ancestry-enriched North American cases, 531 Native American ancestry-enriched South American cases, 1,973 Native American ancestry-enriched North American controls, 344 Native American ancestry-enriched South American controls	NA	8p23.1	Intergenic	rs17807624-T	0.64	7E-6		1.31	[1.17-1.45]	Illumina [580483] (imputed)	N
672	chr8	11466744	11466745	rs13278965	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8p23.1	LINC00208	rs13278965-T	NR	5E-11		0.0189394	[0.013-0.025] unit increase	Affymetrix [321114] (imputed)	N
672	chr8	11466744	11466745	rs13278965	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	LINC00208	rs13278965-T	NR	3E-10		0.0196791	[0.014-0.026] unit increase	Affymetrix [321114] (imputed)	N
672	chr8	11466744	11466745	rs13278965	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	8p23.1	LINC00208	rs13278965-T	NR	1E-9		0.0190164	[0.013-0.025] unit increase	Affymetrix [323858] (imputed)	N
672	chr8	11466744	11466745	rs13278965	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	LINC00208	rs13278965-A	NR	1E-9		0.010594	[0.0072-0.014] unit increase	Affymetrix [18485882] (imputed)	N
672	chr8	11467556	11467557	rs13280442	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption interaction (2df test)	63,608 European ancestry drinkers, 10,193 African American or Afro-Caribbean heavy drinkers,  2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,494 European ancestry non-drinkers, 11,224 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,002 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,452 Hispanic drinkers, 43,316 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,945 Asian ancestry non-drinkers, 6,925 Hispanic non-drinkers	8p23.1	LOC105379242, LINC00208	rs13280442-C	0.55	9E-24	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
672	chr8	11467556	11467557	rs13280442	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption (light vs heavy) interaction (2df test)	12,758 European ancestry heavy drinkers, 1,326 African American or Afro-Caribbean heavy drinkers, 648 Asian ancestry heavy drinkers, 364 Hispanic or Latin American heavy drinkers, 43,947 European ancestry light drinkers, 8,239 African American or Afro-Caribbean light drinkers, 1,141 Asian ancestry light drinkers, 4,448 Hispanic or Latin American light drinkers	42,078 European ancestry heavy drinkers, 217 African American heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic heavy drinkers, 74,706 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	8p23.1	LOC105379242, LINC00208	rs13280442-C	0.55	5E-14	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
672	chr8	11467762	11467763	rs13250871	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Pulse pressure x alcohol consumption interaction (2df test)	91,099 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	238,053 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,447 Hispanic ancestry drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic ancestry non-drinkers	8p23.1	LOC105379242, LINC00208	rs13250871-A	0.4	2E-23	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
672	chr8	11480456	11480457	rs2243407	24024966	Teumer A	2013-08-14	J Clin Periodontol	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (CDC/AAP)	up to 3,915 European ancestry individuals	NA	8p23.1	LINC00208	rs2243407-?	0.64	6E-6	(Age 20-60 years)	1.33	[1.18-1.49]	Affymetrix, Illumina [up to 17585496] (imputed)	N
672	chr8	11480456	11480457	rs2243407	24024966	Teumer A	2013-08-14	J Clin Periodontol	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (CDC/AAP)	up to 3,915 European ancestry individuals	NA	8p23.1	BLK	rs2243407-?	0.65	9E-6	(Age 20-81 years)	1.3	[1.16-1.47]	Affymetrix, Illumina [up to 17585496] (imputed)	N
672	chr8	11480456	11480457	rs2243407	24024966	Teumer A	2013-08-14	J Clin Periodontol	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (CDC/AAP)	up to 3,915 European ancestry individuals	NA	8p23.1	BLK	rs2243407-?	0.65	6E-6	(Age 20-60 years)	1.33	[1.18-1.52]	Affymetrix, Illumina [up to 17585496] (imputed)	N
672	chr8	11483869	11483870	rs12681079	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	8p23.1	NR	rs12681079-C	NR	2E-14		0.0204	[0.015-0.026] unit increase	Affymetrix [9000000] (imputed)	N
672	chr8	11489356	11489357	rs1809357	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8p23.1	NR	rs1809357-T	0.306485	2E-12				Affymetrix, Illumina [24588908] (imputed)	N
672	chr8	11489356	11489357	rs1809357	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	8p23.1	NR	rs1809357-T	0.387369	6E-15		0.014986	[0.011-0.019] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
672	chr8	11491127	11491128	rs17153559	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls	NA	8p23.1	GATA4	rs17153559-G	0.375293	8E-16		0.06670625	[0.05-0.083] unit increase	Affymetrix [7288503] (imputed)	N
672	chr8	11493677	11493678	rs13265201	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	GATA4	rs13265201-C	NR	2E-9		0.010509	[0.0071-0.0139] unit increase	Affymetrix [18485882] (imputed)	N
672	chr8	11494526	11494527	rs2256249	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8p23.1	GATA4	rs2256249-T	NR	5E-9		0.0171236	[0.011-0.023] unit decrease	Affymetrix [321114] (imputed)	N
672	chr8	11494981	11494981	rs201231138	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	GATA4	rs201231138-A	NR	4E-8		0.0178255	[0.011-0.024] unit decrease	Affymetrix [127266] (imputed)	N
672	chr8	11495028	11495029	rs62492465	30894546	Ivarsdottir EV	2019-03-20	Nat Commun	Sequence variation at ANAPC1 accounts for 24% of the variability in corneal endothelial cell density.	Corneal endothelial cell size variation coefficient	6,125 Icelandic ancestry individuals	NA	8p23.1	NR	rs62492465-T		2E-9		0.122	[NR] unit increase	Illumina [NR]	N
672	chr8	11499907	11499908	rs35620480	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	8p23.1	GATA4	rs35620480-C	0.157	5E-9		1.06	[1.04-1.07]	Illumina [34740186] (imputed)	N
672	chr8	11499907	11499908	rs35620480	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	8p23.1	LINC00208, GATA4	rs35620480-C	0.16	1E-6		1.05	[1.03-1.07]	Affymetrix, Illumina [up to 12149979] (imputed)	N
672	chr8	11501682	11501683	rs144686239	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	8p23.1	NR	rs144686239-?	NR	3E-8		5.568	NR z score increase	Illumina [at least 830937] (imputed)	N
672	chr8	11504869	11504870	rs17153585	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	8p23.1	GATA4	rs17153585-T	0.856	1E-8		0.0096	[0.0063-0.0129] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
672	chr8	11517976	11517977	rs4841580	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	GATA4	rs4841580-C	NR	2E-9		0.0190031	[0.013-0.025] unit decrease	Affymetrix [323858] (imputed)	N
672	chr8	11517976	11517977	rs4841580	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	GATA4	rs4841580-C	NR	4E-10		0.0198098	[0.014-0.026] unit decrease	Affymetrix [127266] (imputed)	N
672	chr8	11517976	11517977	rs4841580	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	GATA4	rs4841580-C	NR	1E-8		0.0178384	[0.012-0.024] unit decrease	Affymetrix [321114] (imputed)	N
672	chr8	11521078	11521079	rs4500049	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	8p23.1	GATA4	rs4500049-A	NR	4E-8		0.0154991	[0.01-0.021] unit increase	Affymetrix [319769] (imputed)	N
672	chr8	11521078	11521079	rs4500049	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8p23.1	GATA4	rs4500049-A	NR	5E-14		0.0214865	[0.016-0.027] unit increase	Affymetrix [321114] (imputed)	N
672	chr8	11521078	11521079	rs4500049	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	8p23.1	GATA4	rs4500049-A	NR	2E-12		0.0201353	[0.015-0.026] unit increase	Affymetrix [321169] (imputed)	N
672	chr8	11521078	11521079	rs4500049	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	8p23.1	GATA4	rs4500049-A	NR	4E-11		0.0205073	[0.014-0.027] unit increase	Affymetrix [323858] (imputed)	N
672	chr8	11521078	11521079	rs4500049	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	8p23.1	GATA4	rs4500049-A	0.474399	3E-44		0.0276949	[0.024-0.032] unit increase	Affymetrix [NR] (imputed)	N
672	chr8	11522352	11522353	rs13280055	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cholelithiasis	26,122 European ancestry cases, 461,431 European ancestry controls, 9,305 East Asian ancestry cases, 168,253 East Asian ancestry controls	NA	8p23.1		rs13280055-A	NR	2E-14		0.113	[0.084-0.142] unit increase	Affymetrix, Illumina [25844936] (imputed)	N
672	chr8	11522352	11522353	rs13280055	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	8p23.1	NR	rs13280055-G	0.866124	4E-8		0.0082013	[0.0048-0.0116] unit increase	Affymetrix [16582621] (imputed)	N
672	chr8	11522352	11522353	rs13280055	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	8p23.1	NR	rs13280055-G	0.866124	3E-6		0.00750666	[0.0039-0.0111] unit increase	Affymetrix [16582614] (imputed)	N
672	chr8	11522352	11522353	rs13280055	30504769	Ferkingstad E	2018-11-30	Nat Commun	Genome-wide association meta-analysis yields 20 loci associated with gallstone disease.	Gallstone disease	27,174 European ancestry cases, 736,838 European ancestry controls	NA	8p23.1	Intergenic	rs13280055-?		7E-14		1.11	[1.08-1.14]	Affymetrix, Illumina [43000000] (imputed)	N
672	chr8	11522783	11522784	rs4295623	26835600	Hu Y	2016-02-02	Nat Commun	GWAS of 89,283 individuals identifies genetic variants associated with self-reporting of being a morning person.	Morning vs. evening chronotype	38,937 European ancestry morning chronotype individuals, 50,346 European ancestry evening chronotype individuals	NA	8p23.1	NR	rs4295623-?	NR	7E-7				Illumina [7427422] (imputed)	N
672	chr8	11525434	11525435	rs11250157	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8p23.1	NR	rs11250157-G	0.49392	3E-10				Affymetrix, Illumina [17210439] (imputed)	N
672	chr8	11525434	11525435	rs11250157	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	8p23.1	GATA4	rs11250157-G	0.497878	4E-11		0.039867684	[0.028-0.052] unit decrease	Affymetrix [7288503] (imputed)	N
672	chr8	11530492	11530493	rs10903342	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	GATA4	rs10903342-C	NR	1E-10		0.0202041	[0.014-0.026] unit increase	Affymetrix [323858] (imputed)	N
672	chr8	11530492	11530493	rs10903342	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	GATA4	rs10903342-C	NR	2E-11		0.0210686	[0.015-0.027] unit increase	Affymetrix [127266] (imputed)	N
673	chr8	11534881	11534882	rs10102512	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	GATA4	rs10102512-G	NR	1E-8		0.0203237	[0.013-0.027] unit decrease	Affymetrix [323858] (imputed)	N
673	chr8	11534881	11534882	rs10102512	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	GATA4	rs10102512-G	NR	1E-9		0.0216357	[0.015-0.029] unit decrease	Affymetrix [127266] (imputed)	N
673	chr8	11534881	11534882	rs10102512	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	GATA4	rs10102512-G	NR	8E-9		0.0202949	[0.013-0.027] unit decrease	Affymetrix [321114] (imputed)	N
673	chr8	11534881	11534882	rs10102512	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	8p23.1	GATA4	rs10102512-G	NR	2E-9		0.0211159	[0.014-0.028] unit decrease	Affymetrix [323858] (imputed)	N
673	chr8	11534906	11534907	rs10102524	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	GATA4	rs10102524-A	NR	5E-11		0.011399	[0.008-0.0148] unit decrease	Affymetrix [18485882] (imputed)	N
673	chr8	11538877	11538878	rs60668163	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	8p23.1		rs60668163-C	0.553553	2E-8		0.0207797	[0.014-0.028] unit decrease	NR [11722792] (imputed)	N
673	chr8	11538877	11538878	rs60668163	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	8p23.1		rs60668163-C	0.553553	2E-8		0.0206402	[0.013-0.028] unit decrease	NR [11722792] (imputed)	N
673	chr8	11540723	11540724	rs11784455	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	8p23.1	NR	rs11784455-?	NR	3E-6		0.135249	[0.079-0.192] unit decrease	NR [13958389] (imputed)	N
673	chr8	11542589	11542590	rs28447194	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	8p23.1		rs28447194-?	NR	3E-9				NR [~ 8900000] (imputed)	N
673	chr8	11543662	11543663	rs56109436	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	8p23.1	NR	rs56109436-G	0.09871600000000003	6E-9		0.0258972	[0.017-0.035] unit increase	Affymetrix [16580851] (imputed)	N
673	chr8	11580333	11580334	rs73203495	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	8p23.1	NR	rs73203495-G	NR	5E-10		0.0199	[0.014-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
673	chr8	11580333	11580334	rs73203495	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	8p23.1	NR	rs73203495-G	NR	2E-10		0.0203	[0.014-0.027] unit increase	Affymetrix [9000000] (imputed)	N
673	chr8	11580333	11580334	rs73203495	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	8p23.1	NR	rs73203495-G	NR	4E-10		0.021	[0.015-0.027] unit increase	Affymetrix [9000000] (imputed)	N
673	chr8	11585763	11585764	rs2409806	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	GATA4	rs2409806-T	NR	2E-9		0.0196044	[0.013-0.026] unit decrease	Affymetrix [321114] (imputed)	N
673	chr8	11589032	11589033	rs13278982	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Left ventricular global longitudinal strain (MTAG)	19,260 European ancestry individuals	NA	8p23.1	GATA4	rs13278982-G	0.6575	1E-6		0.1432	[0.086-0.200] unit increase	Affymetrix [~ 9500000] (imputed)	N
673	chr8	11589032	11589033	rs13278982	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Left ventricular global circumferential strain (MTAG)	19,260 European ancestry individuals	NA	8p23.1	GATA4	rs13278982-G	0.6575	3E-7		0.1688	[0.10-0.23] unit increase	Affymetrix [~ 9500000] (imputed)	N
673	chr8	11589041	11589042	rs34421088	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large VLDL	115,082 European ancestry individuals	NA	8p23.1		rs34421088-A	0.510614	9E-21		0.0371882	[0.029-0.045] unit decrease	NR [11722792] (imputed)	N
673	chr8	11589041	11589042	rs34421088	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for VLDL particles	115,082 European ancestry individuals	NA	8p23.1		rs34421088-A	0.510614	6E-27		0.0414641	[0.034-0.049] unit decrease	NR [11722792] (imputed)	N
673	chr8	11589041	11589042	rs34421088	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	8p23.1		rs34421088-G	NR	3E-9		0.009	[0.0061-0.0119] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
673	chr8	11589041	11589042	rs34421088	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	8p23.1		rs34421088-G	NR	2E-20		0.0202	[0.016-0.025] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
673	chr8	11589041	11589042	rs34421088	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	GATA4	rs34421088-A	NR	8E-12		0.011995	[0.0086-0.0154] unit increase	Affymetrix [18485882] (imputed)	N
673	chr8	11589041	11589042	rs34421088	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	8p23.1	intergenic	rs34421088-A	0.52762	2E-23		9.991	z score decrease	Illumina [18485882] (imputed)	N
673	chr8	11589382	11589383	rs10503426	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	GATA4	rs10503426-T	NR	3E-10		0.019976	[0.014-0.026] unit increase	Affymetrix [323858] (imputed)	N
673	chr8	11589382	11589383	rs10503426	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	GATA4	rs10503426-T	NR	4E-11		0.0210639	[0.015-0.027] unit increase	Affymetrix [127266] (imputed)	N
673	chr8	11591135	11591136	rs6983129	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	GATA4	rs6983129-C	NR	1E-8		0.0178374	[0.012-0.024] unit decrease	Affymetrix [321114] (imputed)	N
673	chr8	11591135	11591136	rs6983129	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fruit consumption	335,576 European ancestry individuals	NA	8p23.1	MSRA, XKR6, MTMR9, SLC35G5, GATA4	rs6983129-?	NR	9E-9		0.0141554	[0.0093-0.019] unit increase	Affymetrix [25921788] (imputed)	N
673	chr8	11591915	11591916	rs35726503	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8p23.1	GATA4	rs35726503-A	NR	2E-9		0.0173987	[0.012-0.023] unit decrease	Affymetrix [321114] (imputed)	N
673	chr8	11591915	11591916	rs35726503	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	8p23.1	GATA4	rs35726503-A	NR	2E-8		0.0162526	[0.011-0.022] unit decrease	Affymetrix [321169] (imputed)	N
673	chr8	11592716	11592717	rs11250160	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	GATA4	rs11250160-A	NR	1E-12		0.0219392	[0.016-0.028] unit increase	Affymetrix [321114] (imputed)	N
673	chr8	11593032	11593033	rs13259242	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	8p23.1		rs13259242-G	NR	9E-10		0.0118	[0.0081-0.0155] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
673	chr8	11594596	11594597	rs34962960	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for LDL particles	115,082 European ancestry individuals	NA	8p23.1		rs34962960-G	0.526787	4E-10		0.0252633	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
673	chr8	11596162	11596163	rs7838131	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	GATA4	rs7838131-G	NR	3E-8		0.0175348	[0.011-0.024] unit decrease	Affymetrix [323858] (imputed)	N
673	chr8	11596162	11596163	rs7838131	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	GATA4	rs7838131-G	NR	6E-9		0.0184463	[0.012-0.025] unit decrease	Affymetrix [127266] (imputed)	N
673	chr8	11596162	11596163	rs7838131	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	8p23.1	GATA4	rs7838131-G	NR	9E-9		0.0180354	[0.012-0.024] unit decrease	Affymetrix [323858] (imputed)	N
673	chr8	11596436	11596437	rs11250163	30894546	Ivarsdottir EV	2019-03-20	Nat Commun	Sequence variation at ANAPC1 accounts for 24% of the variability in corneal endothelial cell density.	Corneal endothelial cell size variation coefficient	6,125 Icelandic ancestry individuals	NA	8p23.1	NR	rs11250163-C		2E-8		0.108	[NR] unit decrease	Illumina [NR]	N
673	chr8	11606151	11606152	rs2409814	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8p23.1	GATA4	rs2409814-C	NR	9E-9		0.0165726	[0.011-0.022] unit increase	Affymetrix [321114] (imputed)	N
673	chr8	11606151	11606152	rs2409814	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	GATA4	rs2409814-C	NR	2E-8		0.0174344	[0.011-0.024] unit increase	Affymetrix [321114] (imputed)	N
673	chr8	11607395	11607396	rs3735814	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption interaction (2df test)	63,608 European ancestry drinkers, 10,193 African American or Afro-Caribbean heavy drinkers,  2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,494 European ancestry non-drinkers, 11,224 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,002 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,452 Hispanic drinkers, 43,316 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,945 Asian ancestry non-drinkers, 6,925 Hispanic non-drinkers	8p23.1	GATA4	rs3735814-A	0.52	2E-10	(EA, Hispanic)			Affymetrix, Illumina [up to 39321347] (imputed)	N
673	chr8	11609994	11609995	rs36038176	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption interaction (2df test)	63,608 European ancestry drinkers, 10,193 African American or Afro-Caribbean heavy drinkers,  2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,494 European ancestry non-drinkers, 11,224 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,002 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,452 Hispanic drinkers, 43,316 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,945 Asian ancestry non-drinkers, 6,925 Hispanic non-drinkers	8p23.1	GATA4	rs36038176-T	0.28	3E-10	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
673	chr8	11611205	11611206	rs810738	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	GATA4	rs810738-A	NR	4E-8		0.018611	[0.012-0.025] unit increase	Affymetrix [323858] (imputed)	N
673	chr8	11611499	11611500	rs17153755	28604728	Litchfield K	2017-06-12	Nat Genet	Identification of 19 new risk loci and potential regulatory mechanisms influencing susceptibility to testicular germ cell tumor.	Testicular germ cell tumor	5,518 European ancestry cases, 19,055 European ancestry controls	1,801 European ancestry cases, 4,027 European ancestry controls	8p23.1	GATA4, c8orf	rs17153755-C	0.65	4E-8		1.16	[1.11-1.21]	Illumina [at least 371504] (imputed)	N
673	chr8	11611722	11611723	rs7826055	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	GATA4	rs7826055-C	NR	2E-8		0.0191486	[0.013-0.026] unit increase	Affymetrix [127266] (imputed)	N
673	chr8	11611722	11611723	rs7826055	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	GATA4	rs7826055-C	NR	3E-9		0.0197881	[0.013-0.026] unit increase	Affymetrix [321114] (imputed)	N
673	chr8	11611864	11611865	rs804281	35210625	Barc J	2022-02-24	Nat Genet	Genome-wide association analyses identify new Brugada syndrome risk loci and highlight a new mechanism of sodium channel regulation in disease susceptibility.	Brugada syndrome	2,820 European ancestry cases, 10,001 European ancestry controls	NA	8p23.1	GATA4	rs804281-G	0.58	1E-9		1.22	[1.15 - 1.30]	Affymetrix, Illumina [6990521] (imputed)	N
673	chr8	11611864	11611865	rs804281	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	GATA4	rs804281-A	NR	1E-8		0.0180978	[0.012-0.024] unit increase	Affymetrix [127266] (imputed)	N
673	chr8	11611864	11611865	rs804281	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	8p23.1		rs804281-?	NR	1E-14		0.015895	[0.012-0.02] unit decrease	NR [6912294] (imputed)	N
673	chr8	11611864	11611865	rs804281	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	417,580 European ancestry individuals	NA	8p23.1		rs804281-A	0.416395	2E-14		0.015	[0.011-0.019] unit decrease	NR [7250403] (imputed)	N
673	chr8	11611864	11611865	rs804281	30670697	Kilpelainen TO	2019-01-22	Nat Commun	Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity.	Triglycerides x physical activity interaction (2df test)	7,294 African American inactive individuals, 12,832 African American active individuals, 1,352 Asian ancestry inactive individuals, 3,049 Asian ancestry active individuals, 20,622 European ancestry inactive individuals, 51,480 European ancestry active individuals, 2,166 Hispanic or Latin American inactive individuals, 3,486 Hispanic or Latin American active individuals	580 African American inactive individuals, 1,540 African American active individuals, 1,217 South African Black ancestry inactive individuals, 389 South African Black ancestry active individuals, 765 East Asian ancestry inactive individuals, 1,814 East Asian ancestry active individuals,  724 South Asian ancestry inactive individuals, 1,424 South Asian ancestry active individuals, 32,456 European ancestry inactive individuals, 49,510 European ancestry active individuals, 2,619 Hispanic inactive individuals, 8,803 Hispanic active individuals	8p23.1	NR	rs804281-A	0.3615	1E-13				Affymetrix, Illumina [at least 2500000] (imputed)	N
673	chr8	11612697	11612698	rs804280	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	8p23.1	NR	rs804280-A	0.581959	4E-11		0.013033	[0.0092-0.0169] unit increase	Affymetrix [16668957] (imputed)	N
673	chr8	11612697	11612698	rs804280	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	GATA4	rs804280-C	NR	1E-9		0.01055	[0.0071-0.014] unit decrease	Affymetrix [18485882] (imputed)	N
673	chr8	11612697	11612698	rs804280	23049088	Meng W	2012-10-09	Invest Ophthalmol Vis Sci	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		8p23.1	GATA4	rs804280-?	0.406	4E-6			[NR]	Affymetrix, Illumina [152234]	N
673	chr8	11614574	11614575	rs3729856	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	8p23.1	NR	rs3729856-G	NR	1E-9		0.0228	[0.015-0.03] unit decrease	Affymetrix [9000000] (imputed)	N
673	chr8	11614574	11614575	rs3729856	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	8p23.1	NR	rs3729856-G	NR	5E-10		0.0245	[0.017-0.032] unit increase	Affymetrix [9000000] (imputed)	N
673	chr8	11615464	11615465	rs809205	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Processed meat consumption	335,576 European ancestry individuals	NA	8p23.1	MSRA, RP1L1, C8orf74, SOX7, XKR6, MTMR9, SLC35G5, C8orf12, FAM167A, BLK, GATA4, C8orf49, NEIL2, FDFT1, CTSB	rs809205-?	NR	1E-9		0.0156397	[0.011-0.021] unit decrease	Affymetrix [25921788] (imputed)	N
673	chr8	11619204	11619205	rs13281294	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	8p23.1	Intergenic	rs13281294-C	0.8683	1E-8		0.0163	[0.011-0.022] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
673	chr8	11622000	11622001	rs2645453	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	C8orf49	rs2645453-G	NR	6E-9		0.0101	[0.0067-0.0135] unit decrease	Affymetrix [18485882] (imputed)	N
673	chr8	11623211	11623212	rs10101195	29724592	Pottier C	2018-04-30	Lancet Neurol	Potential genetic modifiers of disease risk and age at onset in patients with frontotemporal lobar degeneration and GRN mutations: a genome-wide association study.	Frontotemporal dementia with GRN mutation	382 European ancestry cases, 1,146 European ancestry controls	67 European ancestry cases, 1,798 European ancestry controls	8p23.1	NEIL2	rs10101195-C	0.77	1E-6		1.6129031	[1.33-1.96]	Illumina [7033776] (imputed)	N
673	chr8	11623211	11623212	rs10101195	29724592	Pottier C	2018-04-30	Lancet Neurol	Potential genetic modifiers of disease risk and age at onset in patients with frontotemporal lobar degeneration and GRN mutations: a genome-wide association study.	Frontotemporal dementia	382 European ancestry GRN mutation carrier cases, 1,146 European ancestry controls	67 GRN mutation carrier European ancestry cases, 143 GRN-negative European ancestry cases, 1,798 European ancestry controls	8p23.1	NEIL2	rs10101195-C	0.77	4E-6		1.4705882	[1.25-1.72]	Illumina [7033776] (imputed)	N
673	chr8	11623235	11623236	rs17810889	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium HDL	115,082 European ancestry individuals	NA	8p23.1		rs17810889-A	0.702062	5E-9		0.0248151	[0.016-0.033] unit decrease	NR [11722792] (imputed)	N
673	chr8	11623888	11623889	rs804279	30566500	Day F	2018-12-19	PLoS Genet	Large-scale genome-wide meta-analysis of polycystic ovary syndrome suggests shared genetic architecture for different diagnosis criteria.	Polycystic ovary syndrome	10,074 European ancestry cases, 103,164 European ancestry controls	NA	8p23.1	C8orf49	rs804279-A	0.26	4E-12		0.1276	[0.092-0.164] unit increase	Illumina [> 10000000] (imputed)	N
673	chr8	11623888	11623889	rs804279	26284813	Hayes MG	2015-08-18	Nat Commun	Genome-wide association of polycystic ovary syndrome implicates alterations in gonadotropin secretion in European ancestry populations.	Polycystic ovary syndrome	984 European ancestry cases, 2,964 European ancestry controls	2,021 European ancestry cases, 2,566 European ancestry controls	8p23.1	NEIL2, GATA4, C8orf49, FDFT1	rs804279-A	0.26	8E-10		1.35	[1.18-1.54]	Illumina [at least 624044] (imputed)	N
673	chr8	11624585	11624586	rs7813191	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large HDL	115,082 European ancestry individuals	NA	8p23.1		rs7813191-A	0.721297	5E-10		0.0279362	[0.019-0.037] unit decrease	NR [11722792] (imputed)	N
673	chr8	11629118	11629119	rs804269	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Haemophilus D sp001679485 abundance in stool	5,959 Finnish ancestry individuals	NA	8p23.1		rs804269-T	0.255709	3E-8		0.0933347	[0.061-0.126] unit decrease	Illumina [7980478] (imputed)	N
673	chr8	11629240	11629241	rs804267	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	8p23.1	NEIL2	rs804267-G	0.319317	4E-18		0.0183105	[0.014-0.022] unit increase	Affymetrix [NR] (imputed)	N
673	chr8	11629636	11629637	rs1883016	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cholecystitis	9,820 European ancestry cases, 461,431 European ancestry controls, 1,860 East Asian ancestry cases, 168,253 East Asian ancestry controls	NA	8p23.1		rs1883016-A	NR	4E-8		0.0954	[0.061-0.13] unit increase	Affymetrix, Illumina [25842273] (imputed)	N
673	chr8	11630914	11630915	rs804263	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls	NA	8p23.1	NEIL2	rs804263-T	0.422661	6E-9		0.04730512	[0.031-0.063] unit increase	Affymetrix [7288503] (imputed)	N
673	chr8	11632527	11632528	rs1090107	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	8p23.1	NEIL2	rs1090107-G	NR	1E-12	(EA)			Affymetrix, Illumina [NR] (imputed)	N
673	chr8	11632527	11632528	rs1090107	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	8p23.1	NEIL2	rs1090107-G	NR	1E-10				Affymetrix, Illumina [NR] (imputed)	N
673	chr8	11632527	11632528	rs1090107	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	8p23.1	NEIL2	rs1090107-G	NR	5E-12				Affymetrix, Illumina [NR] (imputed)	N
673	chr8	11632527	11632528	rs1090107	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	8p23.1	NEIL2	rs1090107-G	NR	2E-13	(EA)			Affymetrix, Illumina [NR] (imputed)	N
673	chr8	11632527	11632528	rs1090107	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	8p23.1	NEIL2	rs1090107-G	NR	7E-6		0.01	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
673	chr8	11632527	11632528	rs1090107	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	8p23.1	NEIL2	rs1090107-G	NR	4E-7	(EA)	0.013	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
673	chr8	11633187	11633188	rs7000800	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	NEIL2	rs7000800-G	NR	2E-9		0.0221373	[0.015-0.029] unit increase	Affymetrix [323858] (imputed)	N
673	chr8	11633187	11633188	rs7000800	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	NEIL2	rs7000800-G	NR	1E-9		0.0224528	[0.015-0.03] unit increase	Affymetrix [127266] (imputed)	N
673	chr8	11633187	11633188	rs7000800	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	8p23.1	NEIL2	rs7000800-G	NR	2E-8		0.0205353	[0.013-0.028] unit increase	Affymetrix [323858] (imputed)	N
673	chr8	11636932	11636933	rs8191607	32141793	Garman L	2020-03-06	Ocul Immunol Inflamm	Genome-Wide Association Study of Ocular Sarcoidosis Confirms HLA Associations and Implicates Barrier Function and Autoimmunity in African Americans.	Ocular sarcoidosis	260 African American cases, 1,551 African American controls	NA	8p23.1	NR	rs8191607-T	NR	6E-7		3.135	[2.00-4.91]	Illumina [13976150] (imputed)	N
673	chr8	11638243	11638244	rs6601606	21507922	Ramsuran V	2011-05-01	Clin Infect Dis	Duffy-null-associated low neutrophil counts influence HIV-1 susceptibility in high-risk South African black women.	Neutrophil count	115 African ancestry HIV-negative individuals	NA	8p23.1	NEIL2	rs6601606-?	NR	1E-6				Illumina [874956]	N
673	chr8	11638877	11638878	rs1874546	32902719	Hebbar P	2020-09-09	Hum Genet	Genome-wide landscape establishes novel association signals for metabolic traits in the Arab population.	Systolic blood pressure	2,732 Kuwaiti ancestry individuals	NA	8p23.1	NEIL2	rs1874546-?	NR	8E-8		5.365	NR unit decrease	Illumina [up to 1520000] (imputed)	N
673	chr8	11641406	11641407	rs8191649	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8p23.1	LOC728938	rs8191649-?	NR	6E-6	(LPE 16:0)	0.17800727	[0.1-0.26] unit increase	Affymetrix [at least 2500000] (imputed)	N
673	chr8	11643914	11643915	rs804292	23942779	McGue M	2013-08-14	Behav Genet	A genome-wide association study of behavioral disinhibition.	Nicotine use	7,188 European ancestry individuals	NA	8p23.1	NEIL2	rs804292-G	0.234	3E-6		6.529	[NR] unit decrease	Illumina [527829]	N
673	chr8	11643914	11643915	rs804292	23942779	McGue M	2013-08-14	Behav Genet	A genome-wide association study of behavioral disinhibition.	Alcohol dependence	7,188 European ancestry individuals	NA	8p23.1	NEIL2	rs804292-G	0.234	2E-6		0.414	[NR] unit decrease	Illumina [527829]	N
673	chr8	11647013	11647014	rs1883017	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	8p23.1	NR	rs1883017-A	NR	9E-14		0.0212	[0.016-0.027] unit increase	Affymetrix [9000000] (imputed)	N
673	chr8	11650474	11650475	rs7001819	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	8p23.1	FDFT1	rs7001819-C	0.389107	2E-16		0.018654652	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
673	chr8	11650474	11650475	rs7001819	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	8p23.1	FDFT1	rs7001819-C	0.389145	1E-17		0.019590246	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
673	chr8	11650474	11650475	rs7001819	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	8p23.1	intergenic	rs7001819-?	NR	5E-24		0.027	[0.022-0.032] unit increase	Affymetrix [5701386] (imputed)	N
673	chr8	11653149	11653150	rs7845566	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	8p23.1	NR	rs7845566-C	NR	1E-11		0.0217	[0.015-0.028] unit decrease	Affymetrix [9000000] (imputed)	N
673	chr8	11653149	11653150	rs7845566	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	8p23.1	NR	rs7845566-C	NR	3E-9		0.0198	[0.013-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
673	chr8	11653149	11653150	rs7845566	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	8p23.1	NR	rs7845566-C	NR	3E-9		0.0191	[0.013-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
673	chr8	11657837	11657838	rs13276352	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	FDFT1, RP11-297N6.4	rs13276352-C	NR	3E-10		0.0243544	[0.017-0.032] unit increase	Affymetrix [323858] (imputed)	N
673	chr8	11657837	11657838	rs13276352	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	FDFT1, RP11-297N6.4	rs13276352-C	NR	1E-10		0.0248205	[0.017-0.032] unit increase	Affymetrix [127266] (imputed)	N
673	chr8	11657837	11657838	rs13276352	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	8p23.1	FDFT1, RP11-297N6.4	rs13276352-C	NR	1E-8		0.0217277	[0.014-0.029] unit increase	Affymetrix [323858] (imputed)	N
673	chr8	11657920	11657921	rs2645433	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	FDFT1, RP11-297N6.4	rs2645433-C	NR	7E-10		0.0196718	[0.013-0.026] unit decrease	Affymetrix [321114] (imputed)	N
673	chr8	11657920	11657921	rs2645433	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	8p23.1	FDFT1, RP11-297N6.4	rs2645433-C	NR	6E-9		0.0185919	[0.012-0.025] unit decrease	Affymetrix [323858] (imputed)	N
673	chr8	11659108	11659109	rs2645430	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	3-Hydroxybutyrate levels	113,594 European ancestry individuals	NA	8p23.1		rs2645430-A	0.426942	7E-14		0.0312104	[0.023-0.039] unit increase	NR [11722792] (imputed)	N
673	chr8	11659108	11659109	rs2645430	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	8p23.1		rs2645430-G	NR	2E-8		0.0119	[0.0078-0.016] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
673	chr8	11659108	11659109	rs2645430	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	FDFT1, RP11-297N6.4	rs2645430-A	NR	3E-10		0.0200318	[0.014-0.026] unit increase	Affymetrix [323858] (imputed)	N
673	chr8	11659108	11659109	rs2645430	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	FDFT1, RP11-297N6.4	rs2645430-A	NR	5E-11		0.0208692	[0.015-0.027] unit increase	Affymetrix [127266] (imputed)	N
673	chr8	11659108	11659109	rs2645430	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	FDFT1, RP11-297N6.4	rs2645430-A	NR	3E-12		0.0218383	[0.016-0.028] unit increase	Affymetrix [321114] (imputed)	N
673	chr8	11659108	11659109	rs2645430	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	8p23.1	FDFT1, RP11-297N6.4	rs2645430-A	NR	6E-12		0.0216282	[0.015-0.028] unit increase	Affymetrix [323858] (imputed)	N
673	chr8	11659108	11659109	rs2645430	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	FDFT1	rs2645430-A	NR	4E-9		0.010283	[0.0069-0.0137] unit decrease	Affymetrix [18485882] (imputed)	N
673	chr8	11659108	11659109	rs2645430	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Ejection fraction in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	8p23.1	FDFT1	rs2645430-?	NR	4E-7				Affymetrix [5486770] (imputed)	N
673	chr8	11659702	11659703	rs12056541	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Non-melanoma skin cancer	5,912 European ancestry cases, 181,740 European ancestry controls		8p23.1	NR	rs12056541-T	NR	3E-6		1.1185808	[1.07-1.17]	Affymetrix [5734850] (imputed)	N
673	chr8	11664737	11664738	rs1736060	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	148,164 European ancestry individuals	NA	8p23.1	FDFT1	rs1736060-T	0.6	3E-13	(BMI-adjusted)	0.029	[0.021-0.037] unit increase	Affymetrix, Illumina, Perlegen [10019203] (imputed)	N
673	chr8	11664817	11664818	rs2179010	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	8p23.1		rs2179010-C	0.410459	2E-8		0.0236567	[0.015-0.032] unit increase	NR [11722792] (imputed)	N
673	chr8	11665216	11665217	rs1736057	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	8p23.1	NR	rs1736057-G	0.418011	1E-26		0.0226784	[0.019-0.027] unit decrease	NR [NR]	N
674	chr8	11665804	11665805	rs1736070	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-3 fatty acid levels	115,006 European ancestry individuals	NA	8p23.1		rs1736070-C	0.333592	5E-8		0.0232623	[0.015-0.032] unit increase	NR [11722792] (imputed)	N
674	chr8	11665804	11665805	rs1736070	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	8p23.1		rs1736070-C	0.333586	2E-11		0.029536	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
674	chr8	11665958	11665959	rs1032577	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	8p23.1	FDFT1	rs1032577-T	0.589925	2E-20		0.024201475	[0.019-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
674	chr8	11666450	11666451	rs1616534	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	8p23.1	FDFT1	rs1616534-T	0.581725	7E-18		0.022477312	[0.017-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
674	chr8	11666450	11666451	rs1616534	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	8p23.1	FDFT1	rs1616534-T	0.581732	5E-19		0.023282466	[0.018-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
674	chr8	11666450	11666451	rs1616534	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8p23.1	NR	rs1616534-T	0.587491	9E-11				Affymetrix, Illumina [23472807] (imputed)	N
674	chr8	11666450	11666451	rs1616534	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	8p23.1	NR	rs1616534-T	0.581612	1E-12		0.013665	[0.0099-0.0174] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
674	chr8	11666450	11666451	rs1616534	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	148,164 European ancestry individuals	NA	8p23.1	FDFT1	rs1616534-T	0.6	7E-15		0.033	[0.025-0.041] unit increase	Affymetrix, Illumina, Perlegen [10019203] (imputed)	N
674	chr8	11666767	11666768	rs1619667	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	8p23.1	FDFT1	rs1619667-G	0.587858	7E-19		0.02304358	[0.018-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
674	chr8	11670931	11670932	rs6991234	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	FDFT1	rs6991234-T	NR	4E-9		0.0212341	[0.014-0.028] unit increase	Affymetrix [321114] (imputed)	N
674	chr8	11670931	11670932	rs6991234	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	8p23.1	FDFT1	rs6991234-T	NR	3E-8		0.0200127	[0.013-0.027] unit increase	Affymetrix [323858] (imputed)	N
674	chr8	11676200	11676201	rs191172273	34560606	Park S	2021-09-09	Clin Nutr	Association between polygenetic risk scores related to sarcopenia risk and their interactions with regular exercise in a large cohort of Korean adults.	sarcopenia	1,368 Korean ancestry cases, 15,742 Korean ancestry controls	NA	8p23.1		rs191172273-?	NR	8E-6		1.9	[1.43-2.51]	Affymetrix [NR]	N
674	chr8	11681451	11681452	rs56130098	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LST1	5,341 Icelandic ancestry individuals	NA	8p23.1		rs56130098-T	0.02351	2E-26		0.596842	[0.49-0.71] unit increase	Illumina [7506463] (imputed)	N
674	chr8	11684462	11684463	rs2645424	20708005	Chalasani N	2010-08-10	Gastroenterology	Genome-wide association study identifies variants associated with histologic features of nonalcoholic Fatty liver disease.	Non-alcoholic fatty liver disease histology (other)	236 European ancestry cases	NA	8p23.1	FDFT1	rs2645424-A	0.40	7E-7	(NAS)	0.77	[NR] unit decrease	Illumina [324623]	N
674	chr8	11684462	11684463	rs2645424	20708005	Chalasani N	2010-08-10	Gastroenterology	Genome-wide association study identifies variants associated with histologic features of nonalcoholic Fatty liver disease.	Non-alcoholic fatty liver disease histology (lobular)	236 European ancestry cases	NA	8p23.1	FDFT1	rs2645424-A	0.40	3E-6		0.3	[NR] unit decrease	Illumina [324623]	N
674	chr8	11685341	11685342	rs1692799	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	8p23.1	NR	rs1692799-G	0.678218532376448	2E-11		0.013663843	[0.0097-0.0176] unit increase	NR [NR]	N
674	chr8	11688147	11688148	rs4841600	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small HDL	115,082 European ancestry individuals	NA	8p23.1		rs4841600-T	0.454686	7E-20		0.0378009	[0.03-0.046] unit increase	NR [11722792] (imputed)	N
674	chr8	11688147	11688148	rs4841600	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small HDL	115,082 European ancestry individuals	NA	8p23.1		rs4841600-T	0.454686	3E-20		0.0379497	[0.03-0.046] unit increase	NR [11722792] (imputed)	N
674	chr8	11688147	11688148	rs4841600	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small HDL particles	115,082 European ancestry individuals	NA	8p23.1		rs4841600-T	0.454686	9E-15		0.0322351	[0.024-0.04] unit increase	NR [11722792] (imputed)	N
674	chr8	11688147	11688148	rs4841600	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small HDL	115,082 European ancestry individuals	NA	8p23.1		rs4841600-T	0.454686	4E-11		0.0274894	[0.019-0.036] unit increase	NR [11722792] (imputed)	N
674	chr8	11688147	11688148	rs4841600	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small HDL	115,082 European ancestry individuals	NA	8p23.1		rs4841600-T	0.454686	5E-12		0.0286539	[0.021-0.037] unit increase	NR [11722792] (imputed)	N
674	chr8	11688147	11688148	rs4841600	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	8p23.1		rs4841600-C	NR	7E-9		0.0134	[0.0089-0.0179] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
674	chr8	11688147	11688148	rs4841600	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	8p23.1	FDFT1	rs4841600-C	0.545382	9E-12		0.015506027	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
674	chr8	11689227	11689228	rs2409836	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	8p23.1		rs2409836-T	0.452824	2E-21		0.0371232	[0.029-0.045] unit increase	NR [11722792] (imputed)	N
674	chr8	11689227	11689228	rs2409836	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small VLDL	115,082 European ancestry individuals	NA	8p23.1		rs2409836-T	0.452822	8E-23		0.0393412	[0.032-0.047] unit increase	NR [11722792] (imputed)	N
674	chr8	11689227	11689228	rs2409836	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small LDL	115,082 European ancestry individuals	NA	8p23.1		rs2409836-T	0.452822	2E-16		0.0329973	[0.025-0.041] unit increase	NR [11722792] (imputed)	N
674	chr8	11689227	11689228	rs2409836	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium VLDL	115,082 European ancestry individuals	NA	8p23.1		rs2409836-T	0.452822	7E-21		0.0377279	[0.03-0.046] unit increase	NR [11722792] (imputed)	N
674	chr8	11689227	11689228	rs2409836	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in HDL	115,082 European ancestry individuals	NA	8p23.1		rs2409836-T	0.452822	2E-18		0.0356808	[0.028-0.044] unit increase	NR [11722792] (imputed)	N
674	chr8	11689227	11689228	rs2409836	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total triglycerides levels	115,082 European ancestry individuals	NA	8p23.1		rs2409836-T	0.452822	2E-20		0.0371101	[0.029-0.045] unit increase	NR [11722792] (imputed)	N
674	chr8	11689227	11689228	rs2409836	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small VLDL	115,082 European ancestry individuals	NA	8p23.1		rs2409836-T	0.452822	2E-12		0.0289227	[0.021-0.037] unit increase	NR [11722792] (imputed)	N
674	chr8	11689227	11689228	rs2409836	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium VLDL	115,082 European ancestry individuals	NA	8p23.1		rs2409836-T	0.452822	1E-11		0.0279353	[0.02-0.036] unit increase	NR [11722792] (imputed)	N
674	chr8	11689227	11689228	rs2409836	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in VLDL	115,082 European ancestry individuals	NA	8p23.1		rs2409836-T	0.452822	6E-16		0.0328888	[0.025-0.041] unit increase	NR [11722792] (imputed)	N
674	chr8	11689227	11689228	rs2409836	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total fatty acid levels	115,006 European ancestry individuals	NA	8p23.1		rs2409836-T	0.452841	1E-16		0.0340332	[0.026-0.042] unit increase	NR [11722792] (imputed)	N
674	chr8	11689227	11689228	rs2409836	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	8p23.1		rs2409836-T	0.452841	3E-12		0.0277264	[0.02-0.036] unit decrease	NR [11722792] (imputed)	N
674	chr8	11689227	11689228	rs2409836	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	8p23.1		rs2409836-T	0.452822	5E-14		0.0311503	[0.023-0.039] unit decrease	NR [11722792] (imputed)	N
674	chr8	11689227	11689228	rs2409836	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in VLDL	115,082 European ancestry individuals	NA	8p23.1		rs2409836-T	0.452822	2E-12		0.0289632	[0.021-0.037] unit increase	NR [11722792] (imputed)	N
674	chr8	11689227	11689228	rs2409836	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Monounsaturated fatty acid levels	115,006 European ancestry individuals	NA	8p23.1		rs2409836-T	0.452841	6E-20		0.0374426	[0.029-0.045] unit increase	NR [11722792] (imputed)	N
674	chr8	11689227	11689228	rs2409836	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in VLDL	115,082 European ancestry individuals	NA	8p23.1		rs2409836-T	0.452822	1E-10		0.0264949	[0.018-0.035] unit increase	NR [11722792] (imputed)	N
674	chr8	11689227	11689228	rs2409836	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small VLDL particles	115,082 European ancestry individuals	NA	8p23.1		rs2409836-T	0.452822	1E-12		0.0291273	[0.021-0.037] unit increase	NR [11722792] (imputed)	N
674	chr8	11689227	11689228	rs2409836	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium VLDL particles	115,082 European ancestry individuals	NA	8p23.1		rs2409836-T	0.452822	2E-8		0.0232735	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
674	chr8	11689227	11689228	rs2409836	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of chylomicrons and extremely large VLDL particles	115,082 European ancestry individuals	NA	8p23.1		rs2409836-T	0.452822	2E-20		0.0369202	[0.029-0.045] unit increase	NR [11722792] (imputed)	N
674	chr8	11689227	11689228	rs2409836	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large VLDL	115,082 European ancestry individuals	NA	8p23.1		rs2409836-T	0.452822	5E-13		0.0296481	[0.022-0.038] unit increase	NR [11722792] (imputed)	N
674	chr8	11689227	11689228	rs2409836	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	FDFT1	rs2409836-T	NR	1E-8		0.0099608	[0.0065-0.0134] unit decrease	Affymetrix [18485882] (imputed)	N
674	chr8	11692568	11692569	rs3779660	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	FDFT1	rs3779660-T	NR	5E-10		0.0202533	[0.014-0.027] unit decrease	Affymetrix [321114] (imputed)	N
674	chr8	11695734	11695735	rs62495675	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	8p23.1	NR	rs62495675-?	NR	5E-8	(right cerebellum exterior)			NR [9227495] (imputed)	N
674	chr8	11695871	11695872	rs10903343	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	8p23.1		rs10903343-T	0.463906	2E-11		0.026649	[0.019-0.034] unit increase	NR [11722792] (imputed)	N
674	chr8	11695871	11695872	rs10903343	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	8p23.1		rs10903343-T	0.463906	4E-14		0.0293601	[0.022-0.037] unit increase	NR [11722792] (imputed)	N
674	chr8	11695871	11695872	rs10903343	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large VLDL	115,082 European ancestry individuals	NA	8p23.1		rs10903343-T	0.463906	2E-21		0.0374755	[0.03-0.045] unit increase	NR [11722792] (imputed)	N
674	chr8	11695871	11695872	rs10903343	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small HDL	115,082 European ancestry individuals	NA	8p23.1		rs10903343-T	0.463906	3E-21		0.0378474	[0.03-0.046] unit increase	NR [11722792] (imputed)	N
674	chr8	11695871	11695872	rs10903343	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium HDL	115,082 European ancestry individuals	NA	8p23.1		rs10903343-T	0.463906	8E-20		0.0369791	[0.029-0.045] unit increase	NR [11722792] (imputed)	N
674	chr8	11695871	11695872	rs10903343	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	8p23.1		rs10903343-T	0.463906	3E-19		0.0357461	[0.028-0.044] unit increase	NR [11722792] (imputed)	N
674	chr8	11695871	11695872	rs10903343	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in VLDL	115,082 European ancestry individuals	NA	8p23.1		rs10903343-T	0.463906	2E-21		0.0378743	[0.03-0.046] unit increase	NR [11722792] (imputed)	N
674	chr8	11695871	11695872	rs10903343	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large VLDL	115,082 European ancestry individuals	NA	8p23.1		rs10903343-T	0.463906	2E-19		0.0357605	[0.028-0.044] unit increase	NR [11722792] (imputed)	N
674	chr8	11695871	11695872	rs10903343	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large VLDL	115,082 European ancestry individuals	NA	8p23.1		rs10903343-T	0.463906	5E-19		0.0355506	[0.028-0.043] unit increase	NR [11722792] (imputed)	N
674	chr8	11695871	11695872	rs10903343	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	8p23.1		rs10903343-T	0.463906	1E-20		0.0371894	[0.029-0.045] unit increase	NR [11722792] (imputed)	N
674	chr8	11695871	11695872	rs10903343	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	8p23.1		rs10903343-T	0.463923	6E-16		0.0309771	[0.023-0.038] unit increase	NR [11722792] (imputed)	N
674	chr8	11695871	11695872	rs10903343	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	8p23.1		rs10903343-T	0.463906	2E-26		0.0440105	[0.036-0.052] unit decrease	NR [11722792] (imputed)	N
674	chr8	11695871	11695872	rs10903343	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large VLDL	115,082 European ancestry individuals	NA	8p23.1		rs10903343-T	0.463906	9E-18		0.0342459	[0.026-0.042] unit increase	NR [11722792] (imputed)	N
674	chr8	11695871	11695872	rs10903343	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large VLDL	115,082 European ancestry individuals	NA	8p23.1		rs10903343-T	0.463906	2E-18		0.0349767	[0.027-0.043] unit increase	NR [11722792] (imputed)	N
674	chr8	11695871	11695872	rs10903343	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	8p23.1		rs10903343-T	0.463906	3E-21		0.0375312	[0.03-0.045] unit increase	NR [11722792] (imputed)	N
674	chr8	11695871	11695872	rs10903343	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	8p23.1		rs10903343-T	0.463906	6E-21		0.0370128	[0.029-0.045] unit decrease	NR [11722792] (imputed)	N
674	chr8	11695871	11695872	rs10903343	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	8p23.1		rs10903343-T	0.463906	4E-17		0.033612	[0.026-0.041] unit increase	NR [11722792] (imputed)	N
674	chr8	11695871	11695872	rs10903343	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	8p23.1		rs10903343-T	0.463906	2E-17		0.0340403	[0.026-0.042] unit increase	NR [11722792] (imputed)	N
674	chr8	11695871	11695872	rs10903343	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	8p23.1		rs10903343-T	0.463906	1E-22		0.0389583	[0.031-0.047] unit increase	NR [11722792] (imputed)	N
674	chr8	11695871	11695872	rs10903343	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Creatinine levels	110,051 European ancestry individuals	NA	8p23.1		rs10903343-T	0.464023	5E-9		0.020718	[0.014-0.028] unit increase	NR [11722792] (imputed)	N
674	chr8	11695871	11695872	rs10903343	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large VLDL particles	115,082 European ancestry individuals	NA	8p23.1		rs10903343-T	0.463906	2E-19		0.0356995	[0.028-0.043] unit increase	NR [11722792] (imputed)	N
674	chr8	11695871	11695872	rs10903343	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large VLDL particles	115,082 European ancestry individuals	NA	8p23.1		rs10903343-T	0.463906	5E-19		0.0354979	[0.028-0.043] unit increase	NR [11722792] (imputed)	N
674	chr8	11695871	11695872	rs10903343	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	8p23.1		rs10903343-T	0.463966	8E-18		0.0340444	[0.026-0.042] unit decrease	NR [11722792] (imputed)	N
674	chr8	11695871	11695872	rs10903343	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	8p23.1		rs10903343-T	0.463906	3E-26		0.0438303	[0.036-0.052] unit increase	NR [11722792] (imputed)	N
674	chr8	11695871	11695872	rs10903343	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	8p23.1		rs10903343-T	0.463906	2E-9		0.023622	[0.016-0.031] unit decrease	NR [11722792] (imputed)	N
674	chr8	11695871	11695872	rs10903343	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large VLDL	115,082 European ancestry individuals	NA	8p23.1		rs10903343-T	0.463906	2E-12		0.0287294	[0.021-0.037] unit increase	NR [11722792] (imputed)	N
674	chr8	11695871	11695872	rs10903343	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	8p23.1		rs10903343-T	0.463906	2E-20		0.0369624	[0.029-0.045] unit increase	NR [11722792] (imputed)	N
674	chr8	11695871	11695872	rs10903343	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	8p23.1		rs10903343-T	0.463906	1E-8		0.0224657	[0.015-0.03] unit decrease	NR [11722792] (imputed)	N
674	chr8	11695871	11695872	rs10903343	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	8p23.1		rs10903343-T	0.463906	6E-13		0.0280141	[0.02-0.036] unit decrease	NR [11722792] (imputed)	N
674	chr8	11695871	11695872	rs10903343	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	8p23.1		rs10903343-T	0.463906	5E-15		0.0316007	[0.024-0.04] unit increase	NR [11722792] (imputed)	N
674	chr8	11695871	11695872	rs10903343	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	8p23.1		rs10903343-T	0.463906	1E-15		0.0322604	[0.024-0.04] unit increase	NR [11722792] (imputed)	N
674	chr8	11695871	11695872	rs10903343	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	8p23.1		rs10903343-T	0.463906	1E-21		0.0380112	[0.03-0.046] unit increase	NR [11722792] (imputed)	N
674	chr8	11695871	11695872	rs10903343	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	FDFT1	rs10903343-T	NR	4E-13		0.0227297	[0.017-0.029] unit increase	Affymetrix [323858] (imputed)	N
674	chr8	11695871	11695872	rs10903343	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	FDFT1	rs10903343-T	NR	4E-14		0.0237441	[0.018-0.03] unit increase	Affymetrix [127266] (imputed)	N
674	chr8	11695871	11695872	rs10903343	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8p23.1	FDFT1	rs10903343-T	NR	1E-8		0.0162899	[0.011-0.022] unit increase	Affymetrix [321114] (imputed)	N
674	chr8	11695871	11695872	rs10903343	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	FDFT1	rs10903343-T	NR	2E-14		0.0236809	[0.018-0.03] unit increase	Affymetrix [321114] (imputed)	N
674	chr8	11695871	11695872	rs10903343	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	8p23.1	FDFT1	rs10903343-T	NR	1E-13		0.0229593	[0.017-0.029] unit increase	Affymetrix [323858] (imputed)	N
674	chr8	11695871	11695872	rs10903343	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	8p23.1	NR	rs10903343-C	0.534718	4E-11		0.0447583	[0.031-0.058] unit increase	Affymetrix [17914406] (imputed)	N
674	chr8	11695871	11695872	rs10903343	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	8p23.1	NR	rs10903343-?		3E-8	(Inferior fronto-occipital fasciculus)			NR [8955960] (imputed)	N
674	chr8	11696351	11696352	rs3258	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	8p23.1	FDFT1	rs3258-C	NR	3E-10		0.020575	[0.014-0.027] unit decrease	Affymetrix [323858] (imputed)	N
674	chr8	11698435	11698436	rs1293331	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of VLDL particles	115,082 European ancestry individuals	NA	8p23.1		rs1293331-C	0.739189	3E-9		0.0277137	[0.019-0.037] unit decrease	NR [11722792] (imputed)	N
674	chr8	11698746	11698747	rs1296028	22451204	Pankratz N	2012-03-01	Ann Neurol	Meta-analysis of Parkinson's disease: identification of a novel locus, RIT2.	Parkinson's disease	4,238 European ancestry cases, 4,239 European ancestry controls	3,738 European ancestry cases, 2,111 European ancestry controls	8p23.1	intergenic	rs1296028-?	NR	1E-6		1.15	[NR]	Illumina [2500000] (imputed)	N
674	chr8	11699987	11699988	rs1692821	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very small VLDL	115,082 European ancestry individuals	NA	8p23.1		rs1692821-C	0.713005	7E-13		0.031896	[0.023-0.041] unit decrease	NR [11722792] (imputed)	N
674	chr8	11699987	11699988	rs1692821	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium LDL	115,082 European ancestry individuals	NA	8p23.1		rs1692821-C	0.713005	7E-11		0.0290239	[0.02-0.038] unit decrease	NR [11722792] (imputed)	N
674	chr8	11699987	11699988	rs1692821	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in LDL	115,082 European ancestry individuals	NA	8p23.1		rs1692821-C	0.713005	2E-9		0.0267685	[0.018-0.036] unit decrease	NR [11722792] (imputed)	N
674	chr8	11699987	11699988	rs1692821	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in IDL	115,082 European ancestry individuals	NA	8p23.1		rs1692821-C	0.713005	2E-8		0.0250929	[0.016-0.034] unit decrease	NR [11722792] (imputed)	N
674	chr8	11699987	11699988	rs1692821	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	8p23.1		rs1692821-C	0.713005	9E-9		0.0257639	[0.017-0.035] unit decrease	NR [11722792] (imputed)	N
674	chr8	11699987	11699988	rs1692821	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Saturated fatty acid levels	115,006 European ancestry individuals	NA	8p23.1		rs1692821-C	0.713019	5E-14		0.0338485	[0.025-0.043] unit decrease	NR [11722792] (imputed)	N
674	chr8	11699987	11699988	rs1692821	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Polyunsaturated fatty acid levels	115,006 European ancestry individuals	NA	8p23.1		rs1692821-C	0.713019	3E-12		0.0309175	[0.022-0.04] unit decrease	NR [11722792] (imputed)	N
674	chr8	11699987	11699988	rs1692821	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-6 fatty acid levels	115,006 European ancestry individuals	NA	8p23.1		rs1692821-C	0.713019	1E-11		0.0301197	[0.021-0.039] unit decrease	NR [11722792] (imputed)	N
674	chr8	11699987	11699988	rs1692821	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Linoleic acid levels	115,006 European ancestry individuals	NA	8p23.1		rs1692821-C	0.713019	2E-9		0.0271064	[0.018-0.036] unit decrease	NR [11722792] (imputed)	N
674	chr8	11700100	11700101	rs6731	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	CTSB	rs6731-C	NR	2E-8		0.0184325	[0.012-0.025] unit decrease	Affymetrix [127266] (imputed)	N
674	chr8	11702005	11702006	rs9009	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein COLEC12	5,367 Icelandic ancestry individuals	NA	8p23.1		rs9009-A	0.288	1E-16		0.171323	[0.13-0.21] unit increase	Illumina [7506463] (imputed)	N
674	chr8	11702005	11702006	rs9009	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8p23.1	CTSB	rs9009-A	NR	1E-8		0.017918	[0.012-0.024] unit increase	Affymetrix [321114] (imputed)	N
674	chr8	11702005	11702006	rs9009	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	8p23.1	CTSB	rs9009-A	NR	3E-8		0.017347	[0.011-0.023] unit increase	Affymetrix [321169] (imputed)	N
674	chr8	11702312	11702313	rs709822	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large HDL	115,082 European ancestry individuals	NA	8p23.1		rs709822-C	0.712823	5E-9		0.0259581	[0.017-0.035] unit decrease	NR [11722792] (imputed)	N
674	chr8	11702312	11702313	rs709822	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholines levels	115,006 European ancestry individuals	NA	8p23.1		rs709822-C	0.712833	2E-8		0.0241477	[0.016-0.033] unit decrease	NR [11722792] (imputed)	N
674	chr8	11702312	11702313	rs709822	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphoglycerides levels	115,006 European ancestry individuals	NA	8p23.1		rs709822-C	0.712833	1E-10		0.0277041	[0.019-0.036] unit decrease	NR [11722792] (imputed)	N
674	chr8	11702312	11702313	rs709822	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphatidylcholine levels	115,006 European ancestry individuals	NA	8p23.1		rs709822-C	0.712833	4E-9		0.0251262	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
674	chr8	11702312	11702313	rs709822	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small HDL	115,082 European ancestry individuals	NA	8p23.1		rs709822-C	0.712823	2E-13		0.0328677	[0.024-0.042] unit decrease	NR [11722792] (imputed)	N
674	chr8	11702312	11702313	rs709822	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	8p23.1	CTSB	rs709822-C	0.7117	5E-13		0.0212	[0.016-0.027] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
674	chr8	11702374	11702375	rs3947	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	Triglyceride levels	up to 237,050 European ancestry individuals, up to 16,935 African ancestry individuals, up to 30,468 South Asian ancestry individuals, up to 8,287 East Asian ancestry individuals, 5,084 Hispanic individuals	up to 286,268 European and unknown ancestry individuals	8p23.1	CTSB	rs3947-A	NR	2E-23		0.021402178	[0.017-0.026] unit increase	Illumina [242289]	N
674	chr8	11702374	11702375	rs3947	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	Triglyceride levels	up to 237,050 European ancestry individuals	NA	8p23.1	NR	rs3947-A	0.25	3E-9		0.022	unit increase	Illumina [242289]	N
674	chr8	11702374	11702375	rs3947	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	8p23.1	FDFT1, CTSB, RP11-589N15.2	rs3947-A	0.2748245	2E-27	(EA, Cathepsin B)	0.5154	[0.43-0.61] unit increase	Affymetrix [509946]	N
674	chr8	11702839	11702840	rs1736081	35264221	Caron B	2022-03-09	Genome Med	Integrative genetic and immune cell analysis of plasma proteins in healthy donors identifies novel associations involving primary immune deficiency genes.	CTSB plasma levels	400 French ancestry individuals	NA	8p23.1		rs1736081-T	NR	7E-11		0.243	[0.18-0.3] ng/mL increase	Illumina [5201092] (imputed)	N
674	chr8	11702839	11702840	rs1736081	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CTSB	5,364 Icelandic ancestry individuals	NA	8p23.1		rs1736081-G	0.2523	1E-211		0.591956	[0.55-0.63] unit increase	Illumina [7506463] (imputed)	N
674	chr8	11705447	11705448	rs1692819	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	8p23.1	CTSB	rs1692819-A	0.292	5E-54	(Cathepsin B, CTSB.3061.61.2)	0.42	[0.36-0.48] unit increase	Affymetrix [10572788] (imputed)	N
674	chr8	11705869	11705870	rs1736089	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	8p23.1	NR	rs1736089-G	0.748125	3E-10	(COLEC12, 5457_5_2)	0.17846595	[0.12-0.23] unit decrease	Illumina [> 1000000] (imputed)	N
674	chr8	11705869	11705870	rs1736089	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	8p23.1	NR	rs1736089-G	0.748125	2E-43	(CTSB, 3061_61_2)	0.38961405	[0.34-0.44] unit decrease	Illumina [> 1000000] (imputed)	N
674	chr8	11705869	11705870	rs1736089	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	8p23.1	NR	rs1736089-G	0.748125	2E-121	(CTSB, 8007_19_3)	0.6119142	[0.56-0.66] unit decrease	Illumina [> 1000000] (imputed)	N
674	chr8	11706512	11706513	rs28592650	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	8p23.1	CTSB	rs28592650-C	0.863	4E-8		0.0094	[0.0061-0.0127] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
674	chr8	11706580	11706581	rs13332	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	8p23.1		rs13332-?	NR	3E-20		0.0195604	[0.015-0.024] unit increase	Affymetrix [20259828] (imputed)	N
674	chr8	11707173	11707174	rs2740594	28892059	Chang D	2017-09-11	Nat Genet	A meta-analysis of genome-wide association studies identifies 17 new Parkinson's disease risk loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	5,851 European ancestry cases, 5,866 European ancestry controls	8p23.1	CTSB	rs2740594-A	0.753	6E-12		1.09	[1.07-1.12]	Illumina [11933700] (imputed)	N
674	chr8	11710368	11710369	rs1293292	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	8p23.1	NR	rs1293292-G	0.71921875	7E-10	(COLEC12, 5457_5_2)	0.16800492	[0.11-0.22] unit decrease	Illumina [> 1000000] (imputed)	N
674	chr8	11710368	11710369	rs1293292	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	8p23.1	NR	rs1293292-G	0.71921875	3E-48	(CTSB, 3061_61_2)	0.39524803	[0.34-0.45] unit decrease	Illumina [> 1000000] (imputed)	N
674	chr8	11710368	11710369	rs1293292	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	8p23.1	NR	rs1293292-G	0.71921875	2E-97	(CTSB, 8007_19_3)	0.5310755	[0.48-0.58] unit decrease	Illumina [> 1000000] (imputed)	N
674	chr8	11710368	11710369	rs1293292	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	8p23.1	NR	rs1293292-G	0.71921875	1E-12	(GNS, 8314_71_3)	0.194467	[0.14-0.25] unit increase	Illumina [> 1000000] (imputed)	N
674	chr8	11710628	11710629	rs1122182	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CTSB	5,365 Icelandic ancestry individuals	NA	8p23.1		rs1122182-A	0.2842	9E-81		0.390582	[0.35-0.43] unit increase	Illumina [7506463] (imputed)	N
674	chr8	11712442	11712443	rs1293298	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	8p23.1	NR	rs1293298-C	NR	8E-15		0.0224	[0.017-0.028] unit increase	Affymetrix [9000000] (imputed)	N
674	chr8	11712442	11712443	rs1293298	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	8p23.1	NR	rs1293298-C	NR	1E-11		0.0196	[0.014-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
674	chr8	11712442	11712443	rs1293298	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	8p23.1	NR	rs1293298-C	NR	2E-9		0.0172	[0.012-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
674	chr8	11712442	11712443	rs1293298	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	8p23.1	NR	rs1293298-C	NR	2E-9		0.0173	[0.012-0.023] unit increase	Affymetrix [9000000] (imputed)	N
674	chr8	11712442	11712443	rs1293298	32201043	Smeland OB	2020-02-08	Biol Psychiatry	Genome-wide Association Analysis of Parkinson's Disease and Schizophrenia Reveals Shared Genetic Architecture and Identifies Novel Risk Loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	NA	8p23.1	CTSB	rs1293298-A		6E-11		0.1103	[0.077-0.143] unit increase	Illumina [NR]	N
674	chr8	11712442	11712443	rs1293298	31755958	Blauwendraat C	2019-11-22	Brain	Genetic modifiers of risk and age at onset in GBA associated Parkinson's disease and Lewy body dementia.	Parkinson's disease in GBA mutation carriers	1,588 European ancestry cases, 7,584 European ancestry controls	up to 1,194 European ancestry cases, up to 13,901 European ancestry controls	8p23.1	CTSB	rs1293298-?	NR	6E-6		1.22	[1.12-1.32]	Illumina [NR] (imputed)	N
674	chr8	11712442	11712443	rs1293298	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	8p23.1	CTSB	rs1293298-A	0.7444	4E-16		0.093	[0.071-0.115] unit increase	NR [7784415] (imputed)	N
674	chr8	11712442	11712443	rs1293298	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8p23.1	FDFT1	rs1293298-?	NR	9E-6	(citrulline)	0.18033922	[0.1-0.26] unit increase	Affymetrix [at least 2500000] (imputed)	N
674	chr8	11719486	11719487	rs2142470	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CTSB	5,365 Icelandic ancestry individuals	NA	8p23.1		rs2142470-T	0.3798	2E-23		0.191204	[0.15-0.23] unit increase	Illumina [7506463] (imputed)	N
674	chr8	11720226	11720227	rs1293303	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MANBA	5,358 Icelandic ancestry individuals	NA	8p23.1		rs1293303-C	0.4524	7E-14		0.140295	[0.1-0.18] unit increase	Illumina [7506463] (imputed)	N
674	chr8	11720226	11720227	rs1293303	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LST1	5,341 Icelandic ancestry individuals	NA	8p23.1		rs1293303-C	0.4524	1E-34		0.209705	[0.18-0.24] unit decrease	Illumina [7506463] (imputed)	N
674	chr8	11720226	11720227	rs1293303	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LGMN	5,367 Icelandic ancestry individuals	NA	8p23.1		rs1293303-C	0.4524	2E-14		0.147598	[0.11-0.19] unit increase	Illumina [7506463] (imputed)	N
674	chr8	11720226	11720227	rs1293303	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GNS	5,360 Icelandic ancestry individuals	NA	8p23.1		rs1293303-C	0.4524	1E-125		0.428486	[0.39-0.46] unit increase	Illumina [7506463] (imputed)	N
674	chr8	11720226	11720227	rs1293303	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CREG1	5,362 Icelandic ancestry individuals	NA	8p23.1		rs1293303-C	0.4524	2E-29		0.21041	[0.17-0.25] unit increase	Illumina [7506463] (imputed)	N
674	chr8	11720226	11720227	rs1293303	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CCDC50	5,365 Icelandic ancestry individuals	NA	8p23.1		rs1293303-C	0.4524	2E-17		0.162132	[0.12-0.2] unit increase	Illumina [7506463] (imputed)	N
674	chr8	11720226	11720227	rs1293303	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	8p23.1	CTSB	rs1293303-C	0.440374	1E-9		0.013636785	[0.0092-0.018] unit decrease	Affymetrix [93095623] (imputed)	N
674	chr8	11720226	11720227	rs1293303	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	8p23.1	CTSB	rs1293303-C	0.440383	2E-9		0.013502284	[0.0091-0.0179] unit decrease	Affymetrix [93095623] (imputed)	N
674	chr8	11722894	11722895	rs146275847	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GNS	5,360 Icelandic ancestry individuals	NA	8p23.1		rs146275847-C	0.02219	7E-25		0.643543	[0.52-0.77] unit decrease	Illumina [7506463] (imputed)	N
674	chr8	11735183	11735184	rs2250903	34127860	Robertson CC	2021-06-14	Nat Genet	Fine-mapping, trans-ancestral and genomic analyses identify causal variants, cells, genes and drug targets for type 1 diabetes.	Type 1 diabetes	20,065 European ancestry cases, 33,065 European ancestry controls, 1,045 other-admixed ancestry cases, 1,103 other-admixed ancestry controls, 1,043 African ancestry cases, 3,206 African ancestry controls	NA	8p23.1	CTSB	rs2250903-T	0.283	1E-10		0.905		Illumina [715631] (imputed)	N
674	chr8	11735183	11735184	rs2250903	34127860	Robertson CC	2021-06-14	Nat Genet	Fine-mapping, trans-ancestral and genomic analyses identify causal variants, cells, genes and drug targets for type 1 diabetes.	Type 1 diabetes	20,065 European ancestry cases, 33,065 European ancestry controls, 1,045 other-admixed ancestry cases, 1,103 other-admixed ancestry controls, 1,043 African ancestry cases, 3,206 African ancestry controls	NA	8p23.1	CTSB	rs2250903-T	0.283	1E-10		0.905		Illumina [715631] (imputed)	N
674	chr8	11735938	11735939	rs880632	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	8p23.1	NR	rs880632-A	NR	1E-21		0.0253	[0.02-0.031] unit decrease	Affymetrix [9000000] (imputed)	N
674	chr8	11735938	11735939	rs880632	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	8p23.1	NR	rs880632-A	NR	1E-10		0.0171	[0.012-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
674	chr8	11736857	11736858	rs78700274	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	CTSB	rs78700274-C	NR	9E-10		0.0203859	[0.014-0.027] unit increase	Affymetrix [321114] (imputed)	N
674	chr8	11736857	11736858	rs78700274	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	8p23.1	CTSB	rs78700274-C	NR	4E-8		0.018258	[0.012-0.025] unit increase	Affymetrix [323858] (imputed)	N
674	chr8	11749241	11749242	rs55894533	27976721	Wang Z	2016-12-15	Nat Commun	A large-scale genome-wide association and meta-analysis identified four novel susceptibility loci for leprosy.	Leprosy	2,743 Chinese ancestry cases, 3,573 Chinese ancestry controls	5,413 Han Chinese ancestry cases, 12,037 Han Chinese ancestry controls	8p23.1	CTSB	rs55894533-C	0.43	5E-11		1.15		Illumina [5546030] (imputed)	N
674	chr8	11755054	11755055	rs1908814	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	RP11-589N15.1	rs1908814-C	NR	4E-13		0.0226789	[0.017-0.029] unit increase	Affymetrix [323858] (imputed)	N
674	chr8	11755054	11755055	rs1908814	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	RP11-589N15.1	rs1908814-C	NR	4E-14		0.0236418	[0.018-0.03] unit increase	Affymetrix [127266] (imputed)	N
674	chr8	11755054	11755055	rs1908814	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	ENSG00000255144	rs1908814-C	NR	8E-10		0.010776	[0.0073-0.0142] unit decrease	Affymetrix [18485882] (imputed)	N
674	chr8	11755054	11755055	rs1908814	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	8p23.1	intergenic	rs1908814-A	0.53981	2E-19		8.992	z score decrease	Illumina [18485882] (imputed)	N
674	chr8	11755803	11755804	rs7819276	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	8p23.1		rs7819276-T	0.636498	1E-8		0.0215791	[0.014-0.029] unit increase	NR [11722792] (imputed)	N
674	chr8	11755803	11755804	rs7819276	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	8p23.1	RP11-589N15.1	rs7819276-C	0.362285	1E-13		0.017182048	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
674	chr8	11755803	11755804	rs7819276	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	ENSG00000255144	rs7819276-T	NR	2E-8		0.0098377	[0.0064-0.0132] unit increase	Affymetrix [18485882] (imputed)	N
674	chr8	11756599	11756600	rs4841605	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	8p23.1		rs4841605-G	0.393267	1E-8		0.0229199	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
674	chr8	11756599	11756600	rs4841605	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large HDL	115,082 European ancestry individuals	NA	8p23.1		rs4841605-G	0.393267	5E-14		0.0288392	[0.021-0.036] unit decrease	NR [11722792] (imputed)	N
674	chr8	11756599	11756600	rs4841605	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large HDL	115,082 European ancestry individuals	NA	8p23.1		rs4841605-G	0.393267	9E-14		0.0285355	[0.021-0.036] unit decrease	NR [11722792] (imputed)	N
674	chr8	11756599	11756600	rs4841605	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	8p23.1		rs4841605-G	0.393267	5E-20		0.036356	[0.029-0.044] unit decrease	NR [11722792] (imputed)	N
674	chr8	11756599	11756600	rs4841605	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large HDL particles	115,082 European ancestry individuals	NA	8p23.1		rs4841605-G	0.393267	4E-11		0.0253113	[0.018-0.033] unit decrease	NR [11722792] (imputed)	N
674	chr8	11756599	11756600	rs4841605	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	8p23.1		rs4841605-G	0.393267	3E-14		0.0289613	[0.021-0.036] unit decrease	NR [11722792] (imputed)	N
674	chr8	11756599	11756600	rs4841605	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	8p23.1		rs4841605-G	0.393267	1E-15		0.0307967	[0.023-0.038] unit decrease	NR [11722792] (imputed)	N
674	chr8	11756900	11756901	rs28595628	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	8p23.1	NR	rs28595628-C	0.605749	8E-16		0.01666	[0.013-0.021] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
674	chr8	11756926	11756927	rs28613925	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	RP11-589N15.1	rs28613925-G	NR	3E-12		0.0222156	[0.016-0.028] unit increase	Affymetrix [321114] (imputed)	N
674	chr8	11756926	11756927	rs28613925	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	8p23.1	RP11-589N15.1	rs28613925-G	NR	3E-12		0.0223313	[0.016-0.029] unit increase	Affymetrix [323858] (imputed)	N
674	chr8	11764291	11764292	rs62493569	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	8p23.1	RP11-589N15.1	rs62493569-A	NR	3E-8		0.0177942	[0.012-0.024] unit decrease	Affymetrix [323858] (imputed)	N
674	chr8	11774185	11774186	rs62493587	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	OR7E158P	rs62493587-G	NR	5E-8		0.0184407	[0.012-0.025] unit decrease	Affymetrix [127266] (imputed)	N
674	chr8	11776903	11776904	rs10435719	27286809	Ligthart S	2016-06-10	BMC Genomics	Bivariate genome-wide association study identifies novel pleiotropic loci for lipids and inflammation.	C-reactive protein levels or triglyceride levels (pleiotropy)	65,000 individuals (C-reactive protein), 96,598 individuals (triglycerides)	NA	8p23.1	CTSB	rs10435719-T	NR	2E-10				NR [25015711] (imputed)	N
674	chr8	11779639	11779640	rs13265989	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	OR7E158P	rs13265989-G	NR	7E-9		0.0200214	[0.013-0.027] unit increase	Affymetrix [323858] (imputed)	N
674	chr8	11779639	11779640	rs13265989	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	OR7E158P	rs13265989-G	NR	2E-9		0.020623	[0.014-0.027] unit increase	Affymetrix [127266] (imputed)	N
674	chr8	11779639	11779640	rs13265989	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Dilated cardiomyopathy (MTAG)	5,521 cases, 397,323 controls	NA	8p23.1	CTSB	rs13265989-G	0.2932	5E-9		1.0921032	1.06-1.12	Affymetrix, Illumina [up to 7736182] (imputed)	N
674	chr8	11782358	11782359	rs71518545	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	OR7E161P	rs71518545-T	NR	4E-12		0.0221345	[0.016-0.028] unit increase	Affymetrix [323858] (imputed)	N
674	chr8	11782358	11782359	rs71518545	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	OR7E161P	rs71518545-T	NR	6E-13		0.0230059	[0.017-0.029] unit increase	Affymetrix [127266] (imputed)	N
674	chr8	11782358	11782359	rs71518545	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	OR7E161P	rs71518545-T	NR	3E-10		0.0198639	[0.014-0.026] unit increase	Affymetrix [321114] (imputed)	N
674	chr8	11784988	11784989	rs57928712	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8p23.1	NR	rs57928712-A	0.396385	8E-15				Affymetrix, Illumina [23467995] (imputed)	N
674	chr8	11795585	11795589	rs138108930	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	8p23.1	intergenic	rs138108930-?	0.5151	6E-15		0.0207	[0.015-0.026] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
675	chr8	11796674	11796675	rs56102998	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	8p23.1		rs56102998-G	0.444268	5E-9		0.0233647	[0.016-0.031] unit increase	NR [11722792] (imputed)	N
675	chr8	11797094	11797095	rs58869268	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8p23.1	OR7E161P	rs58869268-G	NR	2E-8		0.0163125	[0.011-0.022] unit increase	Affymetrix [321114] (imputed)	N
675	chr8	11797094	11797095	rs58869268	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	8p23.1	OR7E161P	rs58869268-G	NR	1E-8		0.0165666	[0.011-0.022] unit increase	Affymetrix [321169] (imputed)	N
675	chr8	11799653	11799654	rs13260325	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota alpha diversity (PD_whole_tree index)	1,068 Japanese ancestry individuals	NA	8p23.1	intergenic	rs13260325-A	0.01	5E-6	(male)	4.48	[2.58-6.38] unit increase	Illumina [6380737] (imputed)	N
675	chr8	11799653	11799654	rs13260325	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota alpha diversity (Chao1 index)	1,068 Japanese ancestry individuals	NA	8p23.1	intergenic	rs13260325-A	0.01	1E-7	(male)	217.0	[138.6-295.4] unit increase	Illumina [6380737] (imputed)	N
675	chr8	11807079	11807080	rs73195039	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	8p23.1	NR	rs73195039-G	NR	2E-9		0.0271	[0.018-0.036] unit increase	Affymetrix [9000000] (imputed)	N
675	chr8	11808080	11808081	rs73195040	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8p23.1	DEFB136	rs73195040-T	0.726754	8E-15	(-30 ms)	0.0485318	[0.036-0.061] unit decrease	Affymetrix [10000000] (imputed)	N
675	chr8	11808080	11808081	rs73195040	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8p23.1	DEFB136	rs73195040-T	0.726754	8E-13	(126 ms)	0.044786	[0.033-0.057] unit increase	Affymetrix [10000000] (imputed)	N
675	chr8	11808080	11808081	rs73195040	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8p23.1	DEFB136	rs73195040-T	0.726754	8E-12	(-28 ms)	0.0428343	[0.03-0.055] unit decrease	Affymetrix [10000000] (imputed)	N
675	chr8	11808080	11808081	rs73195040	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8p23.1	DEFB136	rs73195040-T	0.726754	6E-17	(170 ms)	0.0536359	[0.041-0.066] unit increase	Affymetrix [10000000] (imputed)	N
675	chr8	11808080	11808081	rs73195040	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8p23.1	DEFB136	rs73195040-T	0.726754	6E-16	(168 ms)	0.0521518	[0.04-0.064] unit increase	Affymetrix [10000000] (imputed)	N
675	chr8	11808080	11808081	rs73195040	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8p23.1	DEFB136	rs73195040-T	0.726754	6E-14	(148 ms)	0.048391	[0.036-0.061] unit increase	Affymetrix [10000000] (imputed)	N
675	chr8	11808080	11808081	rs73195040	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8p23.1	DEFB136	rs73195040-T	0.726754	4E-21	(-36 ms)	0.0599606	[0.048-0.072] unit decrease	Affymetrix [10000000] (imputed)	N
675	chr8	11808080	11808081	rs73195040	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8p23.1	DEFB136	rs73195040-T	0.726754	4E-18	(-32 ms)	0.0541828	[0.042-0.067] unit decrease	Affymetrix [10000000] (imputed)	N
675	chr8	11808080	11808081	rs73195040	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8p23.1	DEFB136	rs73195040-T	0.726754	3E-20	(-34 ms)	0.0583399	[0.046-0.071] unit decrease	Affymetrix [10000000] (imputed)	N
675	chr8	11808080	11808081	rs73195040	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8p23.1	DEFB136	rs73195040-T	0.726754	2E-15	(142 ms)	0.0491498	[0.037-0.061] unit increase	Affymetrix [10000000] (imputed)	N
675	chr8	11808080	11808081	rs73195040	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8p23.1	DEFB136	rs73195040-T	0.726754	2E-12	(128 ms)	0.0440464	[0.032-0.056] unit increase	Affymetrix [10000000] (imputed)	N
675	chr8	11808080	11808081	rs73195040	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8p23.1	DEFB136	rs73195040-T	0.726754	1E-8	(-46 ms)	0.0364678	[0.024-0.049] unit decrease	Affymetrix [10000000] (imputed)	N
675	chr8	11808080	11808081	rs73195040	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8p23.1	DEFB136	rs73195040-T	0.726754	1E-17	(-38 ms)	0.0543519	[0.042-0.067] unit decrease	Affymetrix [10000000] (imputed)	N
675	chr8	11808080	11808081	rs73195040	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8p23.1	DEFB136	rs73195040-T	0.726754	1E-12	(134 ms)	0.0452206	[0.033-0.057] unit increase	Affymetrix [10000000] (imputed)	N
675	chr8	11817082	11817083	rs11775396	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	8p23.1	DEFB136	rs11775396-T	0.3101	5E-8		0.013984311	[0.009-0.019] unit increase	Affymetrix [11515109] (imputed)	N
675	chr8	11823302	11823303	rs58637143	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	8p23.1	NR	rs58637143-G	NR	3E-9		0.0159	[0.011-0.021] unit increase	Affymetrix [9000000] (imputed)	N
675	chr8	11823331	11823332	rs4128298	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	8p23.1	DEFB136	rs4128298-T	0.7176	3E-6		0.0131	[0.0076-0.0186] unit decrease	Affymetrix [19819130] (imputed)	N
675	chr8	11823331	11823332	rs4128298	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	8p23.1	DEFB136	rs4128298-T	0.7176	5E-14		0.0199	[0.015-0.025] unit decrease	Affymetrix [19819130] (imputed)	N
675	chr8	11823331	11823332	rs4128298	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	8p23.1	DEFB136	rs4128298-T	0.7176	3E-11		0.0172	[0.012-0.022] unit decrease	Affymetrix [19819130] (imputed)	N
675	chr8	11823600	11823601	rs4128297	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	8p23.1	NR	rs4128297-A	0.210325733771477	2E-11		0.015382724	[0.011-0.02] unit increase	NR [NR]	N
675	chr8	11828199	11828200	rs4841659	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	8p23.1		rs4841659-C	0.527826	2E-8		0.0224208	[0.015-0.03] unit decrease	NR [11722792] (imputed)	N
675	chr8	11828199	11828200	rs4841659	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to monounsaturated fatty acids	115,006 European ancestry individuals	NA	8p23.1		rs4841659-C	0.527826	2E-14		0.0304581	[0.023-0.038] unit decrease	NR [11722792] (imputed)	N
675	chr8	11828199	11828200	rs4841659	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	8p23.1		rs4841659-C	0.527795	7E-10		0.0234303	[0.016-0.031] unit decrease	NR [11722792] (imputed)	N
675	chr8	11828199	11828200	rs4841659	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	8p23.1		rs4841659-C	0.527793	5E-15		0.0322642	[0.024-0.04] unit increase	NR [11722792] (imputed)	N
675	chr8	11828199	11828200	rs4841659	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	DEFB136	rs4841659-T	NR	5E-12		0.0213541	[0.015-0.027] unit decrease	Affymetrix [321114] (imputed)	N
675	chr8	11829307	11829308	rs7836608	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	DEFB136	rs7836608-C	NR	2E-8		0.019428	[0.013-0.026] unit decrease	Affymetrix [323858] (imputed)	N
675	chr8	11829307	11829308	rs7836608	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	DEFB136	rs7836608-C	NR	6E-9		0.0201233	[0.013-0.027] unit decrease	Affymetrix [127266] (imputed)	N
675	chr8	11830149	11830150	rs11998678	32589924	Bi W	2020-06-23	Am J Hum Genet	A Fast and Accurate Method for Genome-Wide Time-to-Event Data Analysis and Its Application to UK Biobank.	Essential hypertension (time to event)	76,566 British ancestry cases, 206,305 British ancestry controls	NA	8p23.1	CTSB;DEFB13 6	rs11998678-?	NR	6E-8				NR [~ 24000000] (imputed)	N
675	chr8	11831660	11831661	rs35283519	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8p23.1	DEFB136	rs35283519-T	NR	3E-8		0.0169241	[0.011-0.023] unit increase	Affymetrix [321114] (imputed)	N
675	chr8	11834538	11834539	rs11784499	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	8p23.1	DEFB136	rs11784499-G	0.487653	3E-14		0.06923298	[0.051-0.087] unit increase	Affymetrix [7288503] (imputed)	N
675	chr8	11836317	11836318	rs11774568	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x short total sleep time interaction (2df test)	2,990 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,300 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, at least 11,842 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,350 European ancestry controls, 4,047 Hispanic/Latino controls	at least 220 African American short sleepers, 326 East Asian ancestry short sleepers, up to 5,288 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 1,292 East Asian ancestry controls, up to 20,844 European ancestry controls, 10,062 Hispanic controls	8p23.1	DEFB136	rs11774568-?	NR	4E-9		0.01106	[0.0064-0.0157] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
675	chr8	11836317	11836318	rs11774568	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x long total sleep time interaction (2df test)	at least 2,926 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, at least 7,664 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,906 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 31,986 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 317 East Asian ancestry long sleepers, up to 5,171 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 928 African American controls, 1,301 East Asian ancestry controls, up to 20,961 European ancestry controls, 10,064 Hispanic controls	8p23.1	DEFB136	rs11774568-?	NR	3E-6				Affymetrix, Illumina [up to 2533153] (imputed)	N
675	chr8	11836317	11836318	rs11774568	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels	14,832 African American individuals, 1,813 Chinese ancestry individuals, 566 Asian ancestry individuals, 39,650 European ancestry individuals, 5,129 Hispanic/Latino individuals	NA	8p23.1	DEFB136	rs11774568-?	NR	8E-7		0.0138	[0.0087-0.0189] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
675	chr8	11836317	11836318	rs11774568	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Non-melanoma skin cancer	5,912 European ancestry cases, 181,740 European ancestry controls		8p23.1	DEFB135	rs11774568-C	NR	4E-8		1.1235955	[1.08-1.16]	Affymetrix [5734850] (imputed)	N
675	chr8	11836513	11836514	rs11992162	30894546	Ivarsdottir EV	2019-03-20	Nat Commun	Sequence variation at ANAPC1 accounts for 24% of the variability in corneal endothelial cell density.	Corneal endothelial cell size variation coefficient	6,125 Icelandic ancestry individuals	NA	8p23.1	NR	rs11992162-A		2E-8		0.107	[NR] unit increase	Illumina [NR]	N
675	chr8	11836513	11836514	rs11992162	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	8p23.1	DEFB136, DEFB135	rs11992162-A	0.5124	3E-9		0.02142646	[0.014-0.028] unit decrease	Affymetrix [~ 2500000] (imputed)	N
675	chr8	11838931	11838932	rs10086500	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	DEFB135	rs10086500-G	NR	7E-9		0.0182731	[0.012-0.024] unit decrease	Affymetrix [323858] (imputed)	N
675	chr8	11838931	11838932	rs10086500	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	DEFB135	rs10086500-G	NR	2E-9		0.0190649	[0.013-0.025] unit decrease	Affymetrix [127266] (imputed)	N
675	chr8	11838931	11838932	rs10086500	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	DEFB135	rs10086500-G	NR	3E-8		0.0174061	[0.011-0.024] unit decrease	Affymetrix [321114] (imputed)	N
675	chr8	11838931	11838932	rs10086500	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	8p23.1	DEFB135	rs10086500-G	NR	2E-8		0.0176454	[0.012-0.024] unit decrease	Affymetrix [323858] (imputed)	N
675	chr8	11838931	11838932	rs10086500	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	DEFB135	rs10086500-A	NR	1E-8		0.009962	[0.0065-0.0134] unit decrease	Affymetrix [18485882] (imputed)	N
675	chr8	11838985	11838986	rs35629514	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8p23.1	DEFB135	rs35629514-A	NR	3E-8		0.0163725	[0.011-0.022] unit decrease	Affymetrix [321114] (imputed)	N
675	chr8	11840884	11840885	rs6601641	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	DEFB135	rs6601641-G	NR	5E-9		0.01016	[0.0068-0.0136] unit decrease	Affymetrix [18485882] (imputed)	N
675	chr8	11843757	11843758	rs4841662	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8p23.1	DEFB135	rs4841662-A	NR	6E-11		0.0187904	[0.013-0.024] unit decrease	Affymetrix [321114] (imputed)	N
675	chr8	11843757	11843758	rs4841662	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	8p23.1	DEFB135	rs4841662-A	NR	1E-10		0.0184388	[0.013-0.024] unit decrease	Affymetrix [321169] (imputed)	N
675	chr8	11843757	11843758	rs4841662	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	DEFB135	rs4841662-G	NR	3E-11		0.011596	[0.0082-0.015] unit decrease	Affymetrix [18485882] (imputed)	N
675	chr8	11843757	11843758	rs4841662	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	8p23.1	NR	rs4841662-A	0.48083844388898	1E-13		0.006792921	[0.005-0.0086] unit decrease	NR [NR]	N
675	chr8	11843757	11843758	rs4841662	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	8p23.1	NR	rs4841662-A	0.48083844388898	2E-21		0.017890655	[0.014-0.022] unit decrease	NR [NR]	N
675	chr8	11845416	11845417	rs7840525	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	8p23.1	Intergenic	rs7840525-T	0.3339	3E-12	(MTAG)	0.0132	[0.0095-0.0169] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
675	chr8	11848005	11848006	rs55846052	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	8p23.1	NR	rs55846052-C	NR	3E-10		0.0201	[0.014-0.026] unit increase	Affymetrix [9000000] (imputed)	N
675	chr8	11848725	11848726	rs4840602	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	DEFB134	rs4840602-G	NR	3E-8		0.0172656	[0.011-0.023] unit increase	Affymetrix [321114] (imputed)	N
675	chr8	11848832	11848833	rs58602899	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	8p23.1		rs58602899-G	0.51475	2E-14		0.0305442	[0.023-0.038] unit increase	NR [11722792] (imputed)	N
675	chr8	11848832	11848833	rs58602899	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	8p23.1		rs58602899-G	0.51475	6E-16		0.0323508	[0.025-0.04] unit decrease	NR [11722792] (imputed)	N
675	chr8	11848832	11848833	rs58602899	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	8p23.1		rs58602899-G	0.51475	3E-15		0.031099	[0.023-0.039] unit decrease	NR [11722792] (imputed)	N
675	chr8	11856582	11856583	rs12676145	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	8p23.1	NR	rs12676145-A	0.485925	6E-10		0.0409896	[0.028-0.054] unit increase	Affymetrix [17914406] (imputed)	N
675	chr8	11856863	11856864	rs7835672	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	RP11-481A20.4	rs7835672-C	NR	2E-8		0.0177164	[0.012-0.024] unit increase	Affymetrix [323858] (imputed)	N
675	chr8	11856863	11856864	rs7835672	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	RP11-481A20.4	rs7835672-C	NR	3E-9		0.0187205	[0.013-0.025] unit increase	Affymetrix [127266] (imputed)	N
675	chr8	11856863	11856864	rs7835672	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	RP11-481A20.4	rs7835672-C	NR	2E-8		0.0174125	[0.011-0.023] unit increase	Affymetrix [321114] (imputed)	N
675	chr8	11856863	11856864	rs7835672	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	8p23.1	RP11-481A20.4	rs7835672-C	NR	4E-8		0.0171451	[0.011-0.023] unit increase	Affymetrix [323858] (imputed)	N
675	chr8	11856863	11856864	rs7835672	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	8p23.1	ENSG00000255174	rs7835672-C	NR	6E-10		0.010788	[0.0074-0.0142] unit decrease	Affymetrix [18485882] (imputed)	N
675	chr8	11859976	11859977	rs28665671	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	8p23.1	NR	rs28665671-T	NR	2E-20		0.0238	[0.019-0.029] unit decrease	Affymetrix [9000000] (imputed)	N
675	chr8	11859976	11859977	rs28665671	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	8p23.1	NR	rs28665671-T	NR	2E-9		0.0161	[0.011-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
675	chr8	11869559	11869560	rs35851103	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p23.1	RP11-481A20.11	rs35851103-G	NR	1E-13		0.0233723	[0.017-0.03] unit decrease	Affymetrix [323858] (imputed)	N
675	chr8	11869559	11869560	rs35851103	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p23.1	RP11-481A20.11	rs35851103-G	NR	9E-15		0.0243592	[0.018-0.031] unit decrease	Affymetrix [127266] (imputed)	N
675	chr8	11869559	11869560	rs35851103	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	8p23.1	RP11-481A20.11	rs35851103-G	NR	5E-12		0.021468	[0.015-0.028] unit decrease	Affymetrix [323858] (imputed)	N
675	chr8	11869559	11869560	rs35851103	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	8p23.1	intergenic	rs35851103-T	0.50187	2E-18		8.742	z score increase	Illumina [18485882] (imputed)	N
675	chr8	11870195	11870196	rs13258934	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycoprotein acetyls levels	115,082 European ancestry individuals	NA	8p23.1		rs13258934-C	0.530978	1E-8		0.0235492	[0.015-0.032] unit decrease	NR [11722792] (imputed)	N
675	chr8	11870195	11870196	rs13258934	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	8p23.1		rs13258934-C	0.530978	1E-12		0.0282425	[0.02-0.036] unit increase	NR [11722792] (imputed)	N
675	chr8	11870195	11870196	rs13258934	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p23.1	RP11-481A20.11	rs13258934-A	NR	1E-9		0.0190079	[0.013-0.025] unit increase	Affymetrix [321114] (imputed)	N
675	chr8	11922800	11922801	rs13273227	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of monounsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	8p23.1		rs13273227-G	0.319763	3E-11		0.0340939	[0.024-0.044] unit increase	NR [11722792] (imputed)	N
676	chr8	11986338	11986339	rs4841747	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	8p23.1	NR	rs4841747-T	0.781077	2E-8		0.062879	[0.041-0.085] unit increase	Affymetrix [17914406] (imputed)	N
676	chr8	12034581	12034582	rs57534651	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	8p23.1		rs57534651-?	NR	3E-34		0.0365826	[0.031-0.043] unit decrease	Affymetrix [20259828] (imputed)	N
677	chr8	12081807	12081808	rs541977430	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	8p23.1		rs541977430-?	NR	4E-19		0.029191	[0.023-0.036] unit increase	Affymetrix [20259828] (imputed)	N
677	chr8	12142899	12142900	rs376909206	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	8p23.1		rs376909206-C	0.410366	4E-9		0.0335523	[0.022-0.045] unit decrease	NR [11722792] (imputed)	N
677	chr8	12149238	12149239	rs10087422	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	8p23.1		rs10087422-?	NR	3E-41		0.0399103	[0.034-0.046] unit decrease	Affymetrix [20259828] (imputed)	N
677	chr8	12179356	12179357	rs55692029	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	8p23.1	intergenic	rs55692029-T	0.29605000000000004	1E-12		7.105	z score increase	Illumina [18485882] (imputed)	N
677	chr8	12179665	12179666	rs137919848	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	8p23.1		rs137919848-T	0.55535	3E-9		0.0354996	[0.024-0.047] unit increase	NR [11722792] (imputed)	N
677	chr8	12179665	12179666	rs137919848	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	8p23.1		rs137919848-T	0.55535	5E-9		0.0347052	[0.023-0.046] unit decrease	NR [11722792] (imputed)	N
677	chr8	12179665	12179666	rs137919848	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	8p23.1		rs137919848-T	0.55535	2E-9		0.0356445	[0.024-0.047] unit decrease	NR [11722792] (imputed)	N
677	chr8	12179665	12179666	rs137919848	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	8p23.1		rs137919848-T	0.55535	8E-9		0.03483	[0.023-0.047] unit decrease	NR [11722792] (imputed)	N
677	chr8	12179665	12179666	rs137919848	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	8p23.1		rs137919848-?	NR	9E-28		0.0350525	[0.029-0.041] unit decrease	Affymetrix [20259828] (imputed)	N
677	chr8	12179682	12179683	rs182740066	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	8p23.1	Intergenic	rs182740066-A	0.4067	5E-11		0.013	[0.0091-0.0169] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
678	chr8	12232533	12232534	rs2739958	31164008	Mullins N	2019-06-05	Am J Psychiatry	GWAS of Suicide Attempt in Psychiatric Disorders and Association With Major Depression Polygenic Risk Scores.	Suicide attempts in schizophrenia	1,683 European ancestry attempters, 2,946 European ancestry nonattempters	NA	8p23.1	NR	rs2739958-C	0.4	8E-6		1.4705882	[1.25-1.75]	NR [8814543] (imputed)	N
678	chr8	12237633	12237634	rs13275429	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	8p23.1		rs13275429-G	0.806978	3E-9		0.0520655	[0.035-0.069] unit decrease	NR [11722792] (imputed)	N
678	chr8	12237633	12237634	rs13275429	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	8p23.1		rs13275429-G	0.806978	3E-8		0.0480031	[0.031-0.065] unit increase	NR [11722792] (imputed)	N
678	chr8	12237633	12237634	rs13275429	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	8p23.1		rs13275429-G	0.806978	3E-8		0.0487211	[0.032-0.066] unit increase	NR [11722792] (imputed)	N
678	chr8	12293872	12293873	rs150510736	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	8p23.1		rs150510736-?	NR	6E-21		0.0367802	[0.029-0.044] unit decrease	Affymetrix [20259828] (imputed)	N
681	chr8	12595297	12595298	rs4072355	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	8p23.1		rs4072355-?	NR	5E-9				NR [~ 8900000] (imputed)	N
681	chr8	12601033	12601034	rs6530964	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Alcohol consumption x experiences in childhood (felt loved by family member) interaction	41,648 European ancestry individuals	NA	8p23.1		rs6530964-?	NR	1E-8		0.4761	[0.31-0.64] unit increase	Affymetrix [NR] (imputed)	N
681	chr8	12607628	12607629	rs7007550	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	8p23.1	NR	rs7007550-?	NR	7E-16				Affymetrix [NR]	N
681	chr8	12618224	12618225	rs12680692	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	8p23.1	NR	rs12680692-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
681	chr8	12623462	12623463	rs62486442	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	8p23.1		rs62486442-A	NR	1E-10		0.0144	[0.01-0.019] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
681	chr8	12623462	12623463	rs62486442	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	8p23.1	LONRF1	rs62486442-G	0.666099	3E-12		0.0142368	[0.01-0.018] unit increase	Affymetrix [NR] (imputed)	N
681	chr8	12623462	12623463	rs62486442	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	8p23.1	NR	rs62486442-G	0.665337	3E-9		0.00756331	[0.005-0.0102] unit increase	Affymetrix [16585854] (imputed)	N
681	chr8	12623462	12623463	rs62486442	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	8p23.1	NR	rs62486442-G	0.665337	7E-6		0.00665734	[0.0037-0.0096] unit increase	Affymetrix [16585866] (imputed)	N
681	chr8	12624424	12624425	rs7464506	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	8p23.1	NR	rs7464506-A	0.66802	2E-13		0.0066005	[0.0048-0.0084] unit increase	Affymetrix [16582909] (imputed)	N
681	chr8	12624424	12624425	rs7464506	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	8p23.1	NR	rs7464506-A	0.66802	9E-11		0.00646373	[0.0045-0.0084] unit increase	Affymetrix [16582965] (imputed)	N
681	chr8	12632902	12632903	rs4474021	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	8p23.1	LONRF1	rs4474021-G	0.680744	2E-9		0.0125948	[0.0085-0.0167] unit increase	Affymetrix [NR] (imputed)	N
681	chr8	12632902	12632903	rs4474021	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	8p23.1	NR	rs4474021-T	0.3076	2E-10		0.0118	[0.0081-0.0155] unit increase	NR [~ 27400000] (imputed)	N
681	chr8	12636581	12636582	rs78157579	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	8p23.1	NR	rs78157579-?	NR	7E-7		0.067345	[0.041-0.094] unit increase	Affymetrix [805426] (imputed)	N
681	chr8	12643054	12643055	rs12056338	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	8p23.1	NR	rs12056338-G	0.5858	3E-11		0.0312	[0.022-0.04] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
681	chr8	12643054	12643055	rs12056338	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	8p23.1	NR	rs12056338-G	0.6086	2E-10		0.0251	[0.017-0.033] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
681	chr8	12663063	12663064	rs74871039	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	8p22		rs74871039-?	NR	1E-13				NR [~ 8900000] (imputed)	N
681	chr8	12664892	12664893	rs57924812	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Meat-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	8p22	intergenic	rs57924812-?	NR	9E-9	(male)	0.0292427	[0.019-0.039] unit increase	Affymetrix [25921788] (imputed)	N
681	chr8	12664892	12664893	rs57924812	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	8p22	NR	rs57924812-T	0.155	1E-9		0.00923434	[0.0062-0.0122] unit increase	NR [9732723] (imputed)	N
681	chr8	12664892	12664893	rs57924812	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking cessation (MTAG)	up to 820,192 European ancestry individuals	NA	8p22	NR	rs57924812-T	0.156	1E-8		0.0122407	[0.008-0.0165] unit increase	NR [9732723] (imputed)	N
681	chr8	12667803	12667804	rs11773992	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	8p22	Intergenic	rs11773992-C	0.1784	7E-13	(MTAG)	0.0154	[0.011-0.02] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
681	chr8	12667803	12667804	rs11773992	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	8p22	Intergenic	rs11773992-G	0.8216	3E-9		0.0175	[0.012-0.023] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
681	chr8	12674423	12674424	rs148230461	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DEFB4A	5,368 Icelandic ancestry individuals	NA	8p22		rs148230461-A	0.0122	6E-14		0.622555	[0.46-0.79] unit increase	Illumina [7506463] (imputed)	N
681	chr8	12679679	12679680	rs76552497	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	8p22		rs76552497-C	0.829	2E-11		0.011	[0.0071-0.0149] unit decrease	NR [NR] (imputed)	N
681	chr8	12679679	12679680	rs76552497	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	8p22		rs76552497-T	0.1704	1E-10		0.012	[0.0083-0.0157] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
681	chr8	12679679	12679680	rs76552497	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	8p22	Intergenic	rs76552497-T	0.1704	1E-11	(MTAG)	0.0119	[0.0086-0.0152] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
681	chr8	12691870	12691871	rs17120471	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	8p22	NR	rs17120471-C	0.101965395991091	6E-6	(IGP63)	0.2366	[0.13-0.34] unit increase	Illumina [~ 2500000] (imputed)	N
681	chr8	12707986	12707987	rs17769850	32690583	Cheng B	2020-07-20	G3 (Bethesda)	Genome-Wide Association Analysis Identified ANXA1 Associated with Shoulder Impingement Syndrome in UK Biobank Samples.	Shoulder impingement syndrome	7,252 European ancestry individuals	NA	8p22		rs17769850-T	NR	4E-6		0.645176	[0.46-0.83] unit increase	Affymetrix [825927] (imputed)	N
681	chr8	12710799	12710800	rs13273810	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	8p22	NR	rs13273810-T	0.187873	1E-8		0.051456355	[0.034-0.069] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
681	chr8	12711862	12711863	rs4831837	17903295	Lunetta KL	2007-09-19	BMC Med Genet	Genetic correlates of longevity and selected age-related phenotypes: a genome-wide association study in the Framingham Study.	Morbidity-free survival	558 individuals	NA	8p22	intergenic	rs4831837-?	NR	5E-7				Affymetrix [70897]	N
682	chr8	12759801	12759802	rs13271583	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	8p22		rs13271583-G	0.39	3E-8		5.54	z score increase	Affymetrix [9061022] (imputed)	N
682	chr8	12759801	12759802	rs13271583	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	8p22	NR	rs13271583-G	0.4525	5E-8				NR [9056863] (imputed)	N
682	chr8	12772754	12772755	rs6989010	24743840	Figueiredo JC	2014-04-17	PLoS Genet	Genome-wide diet-gene interaction analyses for risk of colorectal cancer.	Colorectal cancer (diet interaction)	9,287 European ancestry cases, 9,117 European ancestry controls	NA	8p22	KIAA1456, LONRF1	rs6989010-?	0.98-0.99	2E-6	(Vegetable)	1.64	[1.33-2]	Affymetrix, Illumina [> 2700000] (imputed)	N
682	chr8	12773255	12773256	rs2977125	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	8p22	NR	rs2977125-T	NR	4E-6		1.0638298	[NR]	Illumina [7158791] (imputed)	N
682	chr8	12794909	12794910	rs73542871	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8p22	NR	rs73542871-T	0.02091	3E-9	(LRG1)	0.04903	NR unit increase	Illumina [1671387] (imputed)	N
682	chr8	12811151	12811152	rs2946505	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NA	8p22	intergenic	rs2946505-?	0.78	9E-6		1.06	[1.03-1.09]	Affymetrix, Illumina [~ 2300000] (imputed)	N
682	chr8	12811579	12811580	rs2946504	26818947	Imamura M	2016-01-28	Nat Commun	Genome-wide association studies in the Japanese population identify seven novel loci for type 2 diabetes.	Type 2 diabetes	15,463 Japanese ancestry cases, 26,183 Japanese ancestry controls	20,490 East Asian ancestry cases, 22,922 East Asian ancestry controls, 38,947 European ancestry cases, 121,903 European ancestry controls, 10,587 South Asian ancestry cases, 14,378 South Asian ancestry controls, 3,848 Mexican/Latino cases, 4,366 Mexican/Latino controls	8p22	KIAA1456	rs2946504-T	0.401	4E-6	(Japanese)	1.06	[1.04-1.09]	Illumina [7521072] (imputed)	N
682	chr8	12823670	12823671	rs2946493	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8p22	DLC1	rs2946493-?	NR	3E-6	(CE 20:3)	0.21473126	[0.12-0.31] unit decrease	Affymetrix [at least 2500000] (imputed)	N
682	chr8	12834361	12834362	rs2466254	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	8p22	NR	rs2466254-?	NR	7E-6		0.0507	[0.029-0.073] unit increase	Illumina [at least 560000] (imputed)	N
682	chr8	12834599	12834600	rs2460905	24677629	Wolf EJ	2014-03-27	Depress Anxiety	A genome-wide association study of clinical symptoms of dissociation in a trauma-exposed sample.	Post-traumatic stress disorder	484 European ancestry trauma-exposed individuals	NA	8p22	KIAA1456	rs2460905-?		5E-6		1.38	[0.79-1.97] unit increase	Illumina [1197702]	N
683	chr8	12878017	12878018	rs17786052	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8p22	DLC1	rs17786052-?	NR	7E-6	(kynurenic acid)	0.34287503	[0.19-0.49] unit increase	Affymetrix [at least 2500000] (imputed)	N
683	chr8	12892385	12892386	rs10091877	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung adenocarcinoma	11,273 European ancestry cases,  55,483 European ancestry controls	NA	8p22	KIAA1456, DLC1	rs10091877-T	0.200336414	6E-6		1.1013283	[1.056271959-1.148306496]	Illumina [10439017] (imputed)	N
683	chr8	12892857	12892858	rs113367091	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	8p22	NR	rs113367091-?	NR	3E-6	(EA)	0.8257	[0.48-1.17] unit decrease	Illumina [up to 11892802] (imputed)	N
683	chr8	12897601	12897602	rs9969563	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	8p22	RNU6-842P	rs9969563-T	0.603286	2E-9		0.013719924	[0.0093-0.0182] unit increase	Affymetrix [93095623] (imputed)	N
683	chr8	12928752	12928753	rs7835108	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	8p22	DLC1	rs7835108-G	0.448756	4E-8		0.0108814	[0.007-0.0148] unit decrease	Affymetrix [NR] (imputed)	N
683	chr8	12929792	12929793	rs144424757	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	8p22	Intergenic	rs144424757-G	0.998	2E-6	(AA)	0.234	unit increase	Illumina [NR] (imputed)	N
683	chr8	12931503	12931504	rs144222594	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	8p22	Intergenic	rs144222594-A	0.998	2E-6	(AA)	0.234	unit increase	Illumina [NR] (imputed)	N
683	chr8	12939914	12939915	rs66798303	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	8p22	NR	rs66798303-T	0.367562	3E-8		0.0179973	[0.012-0.024] unit decrease	NR [19129689] (imputed)	N
684	chr8	13012375	13012376	rs12543486	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Lung cancer	2,485 European ancestry cases, 410,350 European ancestry controls	NA	8p22		rs12543486-T	0.83337	4E-8		1.2627	NR	Affymetrix [7846216] (imputed)	N
684	chr8	13029876	13029877	rs74834049	26030696	Cho MH	2015-06-01	Am J Respir Crit Care Med	A Genome-Wide Association Study of Emphysema and Airway Quantitative Imaging Phenotypes.	Percentage gas trapping	3,243 European ancestry chronic obstructive pulmonary disease cases, 901 African American chronic obstructive pulmonary disease cases,  3,062 European ancestry controls, 2,132 African American controls	NA	8p22	DLC1	rs74834049-A	NR	6E-7	(All)	0.12	[0.073-0.167] unit increase	Illumina [6900000] (imputed)	N
684	chr8	13029876	13029877	rs74834049	26030696	Cho MH	2015-06-01	Am J Respir Crit Care Med	A Genome-Wide Association Study of Emphysema and Airway Quantitative Imaging Phenotypes.	Emphysema imaging phenotypes	5,385 European ancestry chronic obstructive pulmonary disease cases, 901 African American chronic obstructive pulmonary disease cases, 3,613 European ancestry controls, 2,132 African American controls	NA	8p22	DLC1	rs74834049-A	NR	6E-10	(Perc15, All)	3.4	[2.34-4.46] unit decrease	Illumina [7600000] (imputed)	N
684	chr8	13039663	13039664	rs181990369	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		8p22	DLC1	rs181990369-A	0.988	4E-6	(liability model)	0.37	[0.21-0.53] unit decrease	NR [19725427] (imputed)	N
684	chr8	13054868	13054869	rs75200691	26030696	Cho MH	2015-06-01	Am J Respir Crit Care Med	A Genome-Wide Association Study of Emphysema and Airway Quantitative Imaging Phenotypes.	Emphysema imaging phenotypes	5,385 European ancestry chronic obstructive pulmonary disease cases, 901 African American chronic obstructive pulmonary disease cases, 3,613 European ancestry controls, 2,132 African American controls	NA	8p22	DLC1	rs75200691-T	NR	1E-8	(%LAA-950, All)	0.15	[0.099-0.201] unit increase	Illumina [7600000] (imputed)	N
684	chr8	13058673	13058674	rs2016444	24315451	van der Valk RJ	2013-12-05	J Allergy Clin Immunol	Fraction of exhaled nitric oxide values in childhood are associated with 17q11.2-q12 and 17q12-q21 variants.	Fractional exhaled nitric oxide (childhood)	5,131 European ancestry individuals, 1,155 Hispanic individuals, 2,572 individuals	NA	8p22	DLC1	rs2016444-G	0.09	9E-7		0.13	[0.079-0.181] unit decrease	Affymetrix, Illumina [2253077] (imputed)	N
684	chr8	13058673	13058674	rs2016444	24315451	van der Valk RJ	2013-12-05	J Allergy Clin Immunol	Fraction of exhaled nitric oxide values in childhood are associated with 17q11.2-q12 and 17q12-q21 variants.	Fractional exhaled nitric oxide (childhood)	5,131 European ancestry individuals, 1,155 Hispanic individuals, 2,572 individuals	NA	8p22	DLC1	rs2016444-G	0.01	1E-12	(EA)	0.292	[0.21-0.37] unit decrease	Affymetrix, Illumina [2253077] (imputed)	N
684	chr8	13095206	13095207	rs7007799	32180562	Kulyte A	2020-01-25	Mol Metab	Genome-wide association study of adipocyte lipolysis in the GENetics of adipocyte lipolysis (GENiAL) cohort.	Stimulated adipocyte lipolysis	874 European ancestry individuals	NA	8p22	NR	rs7007799-A	0.873763	3E-6		0.094	[0.055-0.133] unit decrease	NR [9260588] (imputed)	N
685	chr8	13119167	13119168	rs77236434	28662289	Lin YY	2017-06-29	Cancer	Genome-wide association analysis identifies a GLUL haplotype for familial hepatitis B virus-related hepatocellular carcinoma.	Familial hepatitis B virus-related hepatocellular carcinoma	139 East Asian ancestry cases, 139 East Asian ancestry controls	NA	8p22	DLC1	rs77236434-T	0.0144	3E-7		9.87	[3.46-28.16]	Affymetrix [641398]	N
685	chr8	13130477	13130478	rs1188285	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	8p22	DLC1	rs1188285-C	0.56	2E-12		0.45	[0.33-0.57] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
685	chr8	13130477	13130478	rs1188285	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	8p22	DLC1	rs1188285-C	0.5583	6E-12		0.4593	[0.33-0.59] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
685	chr8	13137947	13137948	rs77948430	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	8p22	DLC1	rs77948430-T	NR	3E-6		0.0334545	[0.019-0.047] unit decrease	Illumina [13519193] (imputed)	N
685	chr8	13145167	13145168	rs74643033	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	8p22	DLC1	rs74643033-C	0.0287841154517786	2E-6	(G_Escherichia_Shigella_RNT)	0.396162	[0.23-0.56] unit increase	Illumina [7711310] (imputed)	N
685	chr8	13161202	13161203	rs1188292	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	8p22	DLC1	rs1188292-C	0.171132	1E-12		0.0175174	[0.013-0.022] unit decrease	NR [13737936] (imputed)	N
685	chr8	13164745	13164746	rs10112506	33893285	Guindo-Martinez M	2021-04-23	Nat Commun	The impact of non-additive genetic associations on age-related complex diseases.	Allergic rhinitis	13,936 European ancestry cases, 42,701 European ancestry controls	NA	8p22		rs10112506-G	0.3900828	9E-6		0.94		Affymetrix [15644656] (imputed)	N
685	chr8	13176406	13176407	rs1671400	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	8p22	DLC1	rs1671400-A	0.153	4E-6	(TBF-b1 )	0.03	[NR] pg/mL increase	Illumina [899892]	N
685	chr8	13182029	13182030	rs10107625	34838041	Naderi E	2021-11-27	J Transl Med	A two-stage genome-wide association study of radiation-induced acute toxicity in head and neck cancer.	radiation-induced toxicity (patient-rated acute sticky saliva)	799 Dutch ancestry individuals	214 Dutch ancestry individuals	8p22		rs10107625-T	NR	7E-7		0.1382	[0.084-0.193] increase	Illumina [6334277] (imputed)	N
685	chr8	13194982	13194983	rs1528624	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	8p22		rs1528624-?	NR	8E-17				NR [~ 8900000] (imputed)	N
685	chr8	13199809	13199810	rs767764	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Nose size	67,023 European ancestry individuals	NA	8p22	DLC1	rs767764-?	NR	4E-7		0.025	[0.016-0.035] unit increase	Illumina [12039491] (imputed)	N
685	chr8	13200211	13200212	rs59738387	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	8p22		rs59738387-?	NR	2E-20				NR [~ 8900000] (imputed)	N
685	chr8	13206162	13206163	rs1378254	34737425	Mansour Aly D	2021-11-04	Nat Genet	Genome-wide association analyses highlight etiological differences underlying newly defined subtypes of diabetes.	Mild obesity-related type 2 diabetes	1,374 Scandinavian ancestry cases, 2,744 Scandinavian ancestry controls	NA	8p22	DLC1, MTND4P7	rs1378254-A	0.0422455	5E-6		0.598	[0.479 - 0.746]	Illumina [5400100] (imputed)	N
685	chr8	13214360	13214361	rs117004340	29077507	Chen H	2017-10-27	Am J Respir Cell Mol Biol	Multi-ethnic Meta-analysis Identifies RAI1 as a Possible Obstructive Sleep Apnea Related Quantitative Trait Locus in Men.	Obstructive sleep apnea trait (apnea hypopnea index)	677 African American women, 544 African American men, 115 Asian women, 113 Asian men, 1,825 European ancestry women, 3,902 European ancestry men,  7,492 Hispanic women, 5,065 Hispanic men	NA	8p22	DLC1	rs117004340-T		2E-7	(men)	0.136	[NR] unit increase	Affymetrix, Illumina [NR] (imputed)	N
685	chr8	13221571	13221572	rs73205708	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	8p22	DLC1	rs73205708-A	0.247141	3E-17		0.022077497	[0.017-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
685	chr8	13231701	13231702	rs1671419	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	8p22	DLC1	rs1671419-G	NR	7E-8				Illumina [up to 11995908] (imputed)	N
685	chr8	13231741	13231742	rs17803958	35132056	Mitchell BL	2022-02-07	Nat Commun	Genome-wide association meta-analysis identifies 29 new acne susceptibility loci.	acne vulgaris	20,165 European ancestry cases, 595,231 European ancestry controls	NA	8p22	NR	rs17803958-T	0.07166	1E-8		1.14	[1.09-1.19]	Affymetrix, Illumina [7072771] (imputed)	N
685	chr8	13237047	13237048	rs289519	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	8p22	DLC1	rs289519-T	NR	3E-8	(AA)			Illumina [up to 11995908] (imputed)	N
686	chr8	13238898	13238899	rs289515	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	8p22	NR	rs289515-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
686	chr8	13252987	13252988	rs118111862	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	8p22		rs118111862-?	NR	2E-8				NR [~ 8900000] (imputed)	N
686	chr8	13252987	13252988	rs118111862	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	8p22		rs118111862-?	NR	7E-9				NR [~ 8900000] (imputed)	N
686	chr8	13260535	13260536	rs289585	22688191	Bergen SE	2012-06-12	Mol Psychiatry	Genome-wide association study in a Swedish population yields support for greater CNV and MHC involvement in schizophrenia compared with bipolar disorder.	Bipolar disorder	836 European ancestry cases, 2,093 European ancestry controls	NA	8p22	DLC1	rs289585-?	NR	5E-6		1.45	[NR]	Affymetrix [745006]	N
686	chr8	13263060	13263061	rs28539528	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	8p22		rs28539528-?	NR	1E-8				NR [~ 8900000] (imputed)	N
686	chr8	13267570	13267571	rs77040936	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	8p22		rs77040936-?	NR	4E-10		0.0187269	[0.013-0.025] unit increase	Affymetrix [20259828] (imputed)	N
686	chr8	13272162	13272163	rs116179838	28654678	Mandage R	2017-06-27	PLoS One	Genetic factors affecting EBV copy number in lymphoblastoid cell lines derived from the 1000 Genome Project samples.	Epstein-Barr virus copy number in lymphoblastoid cell lines	389 East Asian ancestry individuals, 189 South Asian ancestry individuals, 492 European ancestry individuals, 467 Sub-Saharan African ancestry individuals, 59 African American individuals, 157 Hispanic/Latino individuals	NA	8p22	DLC1	rs116179838-?	NR	7E-6	(AA and Sub-Saharan African)			NR [at least 880000]	N
686	chr8	13273266	13273269	rs144370193	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	8p22		rs144370193-T	NR	1E-9		0.0165	[0.011-0.022] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
686	chr8	13273476	13273477	rs7834383	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	8p22		rs7834383-T	0.3479	2E-11		0.11082915	[0.079-0.143] mmHg increase	Affymetrix, Illumina [242866] (imputed)	N
686	chr8	13273696	13273697	rs77682417	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	8p22		rs77682417-?	NR	2E-11				NR [~ 8900000] (imputed)	N
686	chr8	13286752	13286753	rs73208003	28957384	Kim SK	2017-09-28	PLoS One	Two genetic loci associated with ankle injury.	Ankle injury	1,421 European ancestry cases, 154 Hispanic/Latino cases, 121 East Asian ancestry cases, 81,843 European ancestry controls, 8,406 Hispanic/Latino controls, 7,397 East Asian ancestry controls	NA	8p22	NR	rs73208003-T	NR	2E-6		1.5372		Affymetrix [8183964] (imputed)	N
686	chr8	13287798	13287799	rs117036946	31089300	Matoba N	2019-03-25	Nat Hum Behav	GWAS of smoking behaviour in 165,436 Japanese people reveals seven new loci and shared genetic architecture.	Smoking initiation (ever regular vs never regular)	83,830 Japanese ancestry ever smokers, 81,626 Japanese ancestry never smokers	NA	8p22	DLC1	rs117036946-G	0.032	6E-8		1.1	[1.09-1.11]	Illumina [5961480] (imputed)	N
686	chr8	13293125	13293126	rs145099037	34154395	Brikell I	2021-06-22	Am J Psychiatry	Genetic, Clinical, and Sociodemographic Factors Associated With Stimulant Treatment Outcomes in ADHD.	Switch to non-stimulant treatment in ADHD	1,137 European ancestry cases, 3,854 European ancestry controls	NA	8p22		rs145099037-G	0.015	4E-6		0.125	[0.072-0.178] unit decrease	Illumina [6361597] (imputed)	N
686	chr8	13332629	13332630	rs57072673	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	8p22		rs57072673-A	NR	1E-23		0.0222	[0.018-0.027] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
686	chr8	13333580	13333581	rs75140902	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	8p22	DLC1	rs75140902-T	0.0323	5E-15		0.0412	[0.031-0.052] unit decrease	Affymetrix [18391927] (imputed)	N
686	chr8	13351164	13351165	rs117489831	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	8p22	DLC1	rs117489831-?	NR	6E-11		0.03567493	[0.025-0.046] unit decrease	Illumina [27896057] (imputed)	N
686	chr8	13355423	13355424	rs17221614	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs none or mild)	136 Finnish ancestry severe erosion cases, 1011 Finnish ancestry mild or no erosion controls	NA	8p22	DLC1	rs17221614-?	NR	5E-6				Illumina [NR] (imputed)	N
686	chr8	13355423	13355424	rs17221614	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs non-severe)	86 Finnish ancestry male severe erosion cases, 50 Finnish ancestry female severe erosion cases, 817 Finnish ancestry male non-severe erosion controls, 991 Finnish ancestry female non-severe erosion controls	NA	8p22	DLC1	rs17221614-?	NR	7E-7		3.7	[1.98-6.76]	Illumina [NR] (imputed)	N
686	chr8	13356801	13356802	rs3816747	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	8p22		rs3816747-G	0.06	4E-12		6.94	z score increase	Affymetrix [9061022] (imputed)	N
687	chr8	13372119	13372120	rs76364830	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	8p22	DLC1	rs76364830-A	0.0634	3E-33		0.0471	[0.039-0.055] unit decrease	Affymetrix [18391927] (imputed)	N
687	chr8	13372119	13372120	rs76364830	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	8p22		rs76364830-?	NR	1E-43				NR [~ 8900000] (imputed)	N
687	chr8	13392359	13392360	rs73210044	28957384	Kim SK	2017-09-28	PLoS One	Two genetic loci associated with ankle injury.	Ankle injury	1,421 European ancestry cases, 154 Hispanic/Latino cases, 121 East Asian ancestry cases, 81,843 European ancestry controls, 8,406 Hispanic/Latino controls, 7,397 East Asian ancestry controls	NA	8p22	NR	rs73210044-A	NR	6E-6		1.5562		Affymetrix [8183964] (imputed)	N
687	chr8	13401815	13401816	rs1160554	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	8p22	DLC1	rs1160554-C	0.7867	4E-8		0.096	[0.062-0.13] unit decrease	Affymetrix [~ 11900000] (imputed)	N
687	chr8	13402464	13402465	rs7822459	30319691	Liu C	2018-09-24	Front Genet	Genome-Wide Association and Mechanistic Studies Indicate That Immune Response Contributes to Alzheimer's Disease Development.	Cerebrospinal fluid AB1-42 levels	235 early mild cognitive impairment cases, 249 late mild cognitive impairment cases, 47 Alzheimer's disease cases, 281 controls.	NA	8p22	Intergenic	rs7822459-?		4E-8		308.2598	[NR] unit decrease	Illumina [575353]	N
687	chr8	13404768	13404769	rs12548673	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Intraocular pressure	133,492 European ancestry individuals	NA	8p22	C8orf48	rs12548673-?	NR	5E-8		0.0772	[0.05-0.105] unit decrease	Affymetrix, Illumina [up to 40000000] (imputed)	N
687	chr8	13407296	13407297	rs1905014	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	8p22	DLC1	rs1905014-?		1E-8				Affymetrix, Illumina [NR] (imputed)	N
687	chr8	13407296	13407297	rs1905014	31809533	Han X	2019-09-06	Hum Mol Genet	Genome-wide association analysis of 95 549 individuals identifies novel loci and genes influencing optic disc morphology.	Optic disc size	67,040 British ancestry individuals	28,509 European ancestry individuals	8p22	C8orf48	rs1905014-T	0.57	4E-13		0.01	unit decrease	Affymetrix [8928767] (imputed)	N
687	chr8	13414350	13414351	rs6993558	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-hip ratio	1,254 whole genome sequenced European ancestry individuals, 3,071 whole genome sequenced individuals, 29,723 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,053 Mylopotamos (founder/genetic isolate) individuals, 879 Pomak (founder/genetic isolate) individuals	206,053 European ancestry individuals	8p22	DLC1	rs6993558-T	0.5613	9E-7		0.044	[0.027-0.061] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
687	chr8	13419964	13419965	rs7006225	31194736	Tiensuu H	2019-06-13	PLoS Genet	Risk of spontaneous preterm birth and fetal growth associates with fetal SLIT2.	Spontaneous preterm birth (preterm birth)	247 Finnish ancestry infant cases, 419 Finnish ancestry infant controls	NA	8p22		rs7006225-?	NR	7E-6		1.7857143	[1.39-2.33]	Illumina [6778521] (imputed)	N
687	chr8	13419964	13419965	rs7006225	31194736	Tiensuu H	2019-06-13	PLoS Genet	Risk of spontaneous preterm birth and fetal growth associates with fetal SLIT2.	Gestational age at birth (child effect)	666 Finnish ancestry infants	NA	8p22	DLC1	rs7006225-A	NR	7E-6		1.6	unit increase	Illumina [6778521] (imputed)	N
687	chr8	13437875	13437876	rs55843245	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Small cell lung carcinoma	2,664 European ancestry cases,  21,444 European ancestry controls	NA	8p22	C8orf48, SGCZ	rs55843245-A	0.326033226	3E-6		1.1604022	[1.090087033-1.235253053]	Illumina [10439017] (imputed)	N
687	chr8	13438817	13438818	rs7004858	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	8p22	NR	rs7004858-T	0.1165	3E-8				NR [9056863] (imputed)	N
687	chr8	13457291	13457292	rs35380952	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	8p22		rs35380952-A	NR	2E-8		0.0098	[0.0065-0.0131] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
687	chr8	13458793	13458794	rs17227506	28232668	Yu Y	2017-02-24	Nat Commun	Genome-wide analyses of non-syndromic cleft lip with palate identify 14 novel loci and genetic heterogeneity.	Nonsyndromic cleft lip with cleft palate	2,033 Han Chinese ancestry cases, 4,051 Han Chinese ancestry controls	1,346 Han Chinese ancestry cases, 4,542 Han Chinese ancestry controls	8p22	NR	rs17227506-G	0.56	3E-6		1.1494253	[NR]	Illumina [803202]	N
688	chr8	13522002	13522003	rs7835529	33766035	Wakim V	2021-03-25	BMC Med Genomics	New susceptibility alleles associated with severe coronary artery stenosis in the Lebanese population.	Severe coronary stenosis (young age of onset interaction)	1,734 Middle Eastern ancestry cases, 757 Middle Eastern ancestry controls	NA	8p22	intergenic	rs7835529-T	NR	7E-10				Illumina [NR]	N
688	chr8	13536114	13536115	rs11782435	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	8p22	RP11-145O15.3	rs11782435-?	NR	8E-8	(Hispanic/Latino)	1.138663	[0.72-1.55] unit increase	Illumina [31978362] (imputed)	N
688	chr8	13536114	13536115	rs11782435	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	8p22	RP11-145O15.3	rs11782435-?	NR	3E-9		1.019	[0.68-1.36] unit increase	Illumina [31978362] (imputed)	N
688	chr8	13564224	13564225	rs34829185	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Rectal cancer	2,091 European ancestry cases, 410,350 European ancestry controls	NA	8p22		rs34829185-A	0.093672	7E-7		1.271941	NR	Affymetrix [7846216] (imputed)	N
688	chr8	13584633	13584634	rs6992527	34330890	Ip HF	2021-07-30	Transl Psychiatry	Genetic association study of childhood aggression across raters, instruments, and age.	Childhood aggressive behavior	87,485 European ancestry individuals	NA	8p22		rs6992527-T	0.395570845	5E-6		0.011595024	[0.0066-0.0166] unit increase	Affymetrix, Illumina [up to 7284995] (imputed)	N
688	chr8	13615904	13615905	rs79690602	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	8p22		rs79690602-?	NR	7E-10				NR [~ 8900000] (imputed)	N
688	chr8	13625815	13625816	rs17117434	30889042	Innocenti F	2019-03-18	Pharmacogenet Genomics	An initial genetic analysis of gemcitabine-induced high-grade neutropenia in pancreatic cancer patients CALGB 80303 (Alliance).	Gemcitabine-induced early high-grade neutropenia in pancreatic cancer	294 European ancestry cases	NA	8p22	C8orf48, SGCZ	rs17117434-?	NR	5E-6		2.86	[1.78-4.6]	Illumina [457310]	N
689	chr8	13664468	13664469	rs536749404	32279069	Rovira P	2020-04-12	Neuropsychopharmacology	Shared genetic background between children and adults with attention deficit/hyperactivity disorder.	Attention deficit hyperactivity disorder (childhood)	10,617 European ancestry cases, 16,537 European ancestry controls	NA	8p22	NR	rs536749404-T	0.14	3E-6		1.17	[1.10-1.25]	Illumina [~ 1072558] (imputed)	N
689	chr8	13673446	13673447	rs2410116	30563984	Hawi Z	2018-12-18	Transl Psychiatry	A case-control genome-wide association study of ADHD discovers a novel association with the tenascin R (TNR) gene.	Attention deficit hyperactivity disorder	480 European ancestry cases, 1,208 European ancestry controls	NA	8p22	DLC1	rs2410116-?	NR	4E-7		2.0036066	[1.53-2.62]	Illumina [5407269] (imputed)	N
689	chr8	13688900	13688901	rs73516425	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	8p22	intergenic	rs73516425-T	NR	2E-6	(AA)			Illumina [up to 11995908] (imputed)	N
689	chr8	13688900	13688901	rs73516425	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	8p22	intergenic	rs73516425-T	NR	2E-6				Illumina [up to 11995908] (imputed)	N
689	chr8	13738780	13738781	rs10888073	25886283	Chang X	2015-04-17	PLoS One	Genome-wide association study of serum minerals levels in children of different ethnic background.	Magnesium levels	2,317 European ancestry children, 1,283 African American ancestry children	NA	8p22	NR	rs10888073-T	NR	5E-6	(AA)	0.0365	(0.02089-0.0521) mg/dl increase	Illumina [up to 509150]	N
689	chr8	13748947	13748948	rs7836269	29234017	Carayol J	2017-12-12	Nat Commun	Protein quantitative trait locus study in obesity during weight-loss identifies a leptin regulator.	Protein levels in obesity	494 European ancestry individuals	NA	8p22	NR	rs7836269-?	NR	8E-8	(IL-7)	0.31	[0.19-0.43] unit increase	Illumina [4020654] (imputed)	N
690	chr8	13799468	13799469	rs62490354	34330890	Ip HF	2021-07-30	Transl Psychiatry	Genetic association study of childhood aggression across raters, instruments, and age.	Childhood aggressive behavior	87,485 European ancestry individuals	NA	8p22		rs62490354-G	0.888431432	3E-6		0.019279754	[0.011-0.027] unit decrease	Affymetrix, Illumina [up to 7284995] (imputed)	N
690	chr8	13801378	13801379	rs75216060	28641744	Guo W	2017-07-01	Eur Neuropsychopharmacol	Polygenic risk score and heritability estimates reveals a genetic relationship between ASD and OCD.	Obsessive-compulsive disorder or autism spectrum disorder	2,998 European ancestry obsessive-compulsive disorder cases, 6,898 European ancestry autism spectrum disorder cases	NA	8p22	intergenic	rs75216060-A	NR	7E-6		61.3145	[34.62-88.01] unit decrease	Illumina [6995140] (imputed)	N
690	chr8	13820603	13820604	rs80119973	30898391	Lawrenson K	2019-03-19	Gynecol Oncol	Genome-wide association studies identify susceptibility loci for epithelial ovarian cancer in east Asian women.	Epithelial ovarian cancer	3,238 East Asian ancestry cases, 4,083 East Asian ancestry controls	NA	8p22		rs80119973-?	NR	2E-6	(endometrioid)	3.03		Illumina [11595112] (imputed)	N
690	chr8	13871538	13871539	rs117280150	30093612	O'Mara TA	2018-08-09	Nat Commun	Identification of nine new susceptibility loci for endometrial cancer.	Endometrial cancer (Non-endometrioid histology)	1,230 European ancestry cases, 35,447 European ancestry controls	NA	8p22	SGCZ	rs117280150-G	0.042503999999999986	2E-7		1.66	[1.37-2.02]	Affymetrix, Illumina [~ 11700000] (imputed)	N
691	chr8	13955787	13955788	rs12155874	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	8p22	SGCZ	rs12155874-A	NR	4E-9		0.017547108	[0.012-0.023] unit decrease	Affymetrix [NR]	N
691	chr8	13957071	13957072	rs13251453	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Verbal-numerical reasoning	171,304 British ancestry individuals	NA	8p22		rs13251453-?	NR	3E-11				NR [7857346] (imputed)	N
691	chr8	13966250	13966251	rs9643971	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	8p22	Intergenic	rs9643971-T	0.535	5E-15		0.0153	[0.011-0.019] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
691	chr8	13967917	13967918	rs9643911	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	8p22	Intergenic	rs9643911-T	0.5196	8E-20	(MTAG)	0.0163	[0.013-0.02] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
691	chr8	13967917	13967918	rs9643911	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	8p22	Intergenic	rs9643911-T	0.519	9E-19	(MTAG)	0.0146	[0.011-0.018] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
691	chr8	13968731	13968732	rs12682628	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	8p22	NR	rs12682628-T	NR	7E-12		6.854	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
691	chr8	13969303	13969304	rs7010173	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	8p22	SGCZ	rs7010173-T	NR	3E-11		6.634	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
691	chr8	13979843	13979844	rs34389480	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	8p22	Intergenic	rs34389480-A	0.4779	8E-12	(MTAG)	0.009	[0.0065-0.0115] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
691	chr8	13979843	13979844	rs34389480	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	8p22	Intergenic	rs34389480-A	0.4839	8E-16	(MTAG)	0.0185	[0.014-0.023] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
691	chr8	13987213	13987214	rs36067918	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	8p22	Intergenic	rs36067918-A	0.5069	4E-11		0.0149	[0.01-0.019] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
691	chr8	13989488	13989489	rs12675921	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	8p22	NR	rs12675921-A	NR	2E-8		5.58	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
691	chr8	14002019	14002020	rs13253386	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	8p22	NR	rs13253386-T	0.479125	2E-10		0.040173482	[0.028-0.052] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
691	chr8	14002019	14002020	rs13253386	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	8p22	Intergenic	rs13253386-T	0.4901	1E-10		0.0184	[0.013-0.024] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
691	chr8	14002019	14002020	rs13253386	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	8p22	NR	rs13253386-T	NR	2E-13		7.326	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
691	chr8	14002019	14002020	rs13253386	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	8p22	SGCZ	rs13253386-T	NR	5E-10		6.209	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
692	chr8	14081816	14081817	rs115706913	28498854	Liang J	2017-05-12	PLoS Genet	Single-trait and multi-trait genome-wide association analyses identify novel loci for blood pressure in African-ancestry populations.	Hypertension	18,440 African individuals	2,375 African individuals, 3,718 Korean ancestry individuals, 9,348 European ancestry individuals, 3,445 Hispanic individuals	8p22	NR	rs115706913-?	NR	3E-7		0.2128	[0.13-0.29] unit increase	Affymetrix, Illumina [at least 30072738] (imputed)	N
692	chr8	14086272	14086273	rs977229	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	8p22	NR	rs977229-?	NR	1E-10				Affymetrix [~ 8270000] (imputed)	N
692	chr8	14091024	14091025	rs4123853	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	8p22	NA	rs4123853-T	0.3727	1E-15		0.014	[0.011-0.017] unit increase	NR [~ 27400000] (imputed)	N
692	chr8	14091024	14091025	rs4123853	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	8p22	NA	rs4123853-T	0.3727	1E-15		0.014	[0.011-0.017] unit increase	NR [~ 27400000] (imputed)	N
692	chr8	14094092	14094093	rs13250197	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	8p22	NR	rs13250197-?	NR	8E-13				Affymetrix [~ 8270000] (imputed)	N
692	chr8	14095762	14095763	rs6530737	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	8p22		rs6530737-G	NR	2E-12		0.015	[0.011-0.019] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
692	chr8	14095762	14095763	rs6530737	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		8p22	SGCZ	rs6530737-A	0.348838	4E-10		0.00901865	[0.0062-0.0118] unit increase	Affymetrix [12370749]	N
692	chr8	14095899	14095900	rs13263601	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	8p22		rs13263601-?	NR	2E-14				NR [~ 8900000] (imputed)	N
692	chr8	14113815	14113816	rs9886428	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	8p22	NR	rs9886428-G	0.455051607476636	5E-6	(IGP53)	0.1403	[0.08-0.201] unit increase	Illumina [~ 2500000] (imputed)	N
692	chr8	14113815	14113816	rs9886428	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	8p22	NR	rs9886428-G	0.455051607476636	2E-6	(IGP57)	0.1476	[0.087-0.208] unit increase	Illumina [~ 2500000] (imputed)	N
692	chr8	14113815	14113816	rs9886428	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	8p22	NR	rs9886428-G	0.455051607476636	2E-6	(IGP55)	0.1472	[0.087-0.207] unit decrease	Illumina [~ 2500000] (imputed)	N
692	chr8	14113815	14113816	rs9886428	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	8p22	NR	rs9886428-G	0.455051607476636	1E-6	(IGP43)	0.1476	[0.088-0.208] unit decrease	Illumina [~ 2500000] (imputed)	N
692	chr8	14113815	14113816	rs9886428	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	8p22	NR	rs9886428-G	0.455031556990205	3E-6	(IGP3)	0.1428	[0.083-0.203] unit decrease	Illumina [~ 2500000] (imputed)	N
692	chr8	14124808	14124809	rs17294565	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	8p22	NR	rs17294565-C	0.3813	5E-9		0.0274	[0.018-0.037] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
692	chr8	14128753	14128754	rs34346379	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	8p22	NR	rs34346379-G	0.362823	3E-11		0.04886956	[0.034-0.063] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
692	chr8	14148989	14148990	rs35753840	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	8p22	NR	rs35753840-C	0.34	1E-9		0.0254	[0.017-0.034] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
692	chr8	14149449	14149450	rs35521161	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	8p22	NR	rs35521161-?	NR	7E-6		4.48	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
692	chr8	14151406	14151407	rs28639817	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	8p22		rs28639817-?	NR	2E-8				NR [~ 8900000] (imputed)	N
692	chr8	14151406	14151407	rs28639817	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	8p22	NR	rs28639817-G	NR	4E-10		0.02187	[0.015-0.029] unit increase	Affymetrix [10847151] (imputed)	N
692	chr8	14151406	14151407	rs28639817	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	8p22	NR	rs28639817-A	NR	6E-10		6.198	z score decrease	Affymetrix [10847151] (imputed)	N
692	chr8	14151481	14151482	rs1991346	30468137	Fabbri C	2018-11-23	Br J Psychiatry	Genome-wide association study of treatment-resistance in depression and meta-analysis of three independent samples.	Depressive symptom improvement	1,378 European ancestry treatment resistant cases, 934 European ancestry responders to first treatment	NA	8p22	SGCZ	rs1991346-G	0.42	7E-7		0.08	[0.041-0.119] unit decrease	Affymetrix, Illumina [7000000] (imputed)	N
692	chr8	14154461	14154462	rs7814925	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	8p22	SGCZ	rs7814925-C	0.14731	4E-9		5.89	z score decrease	NR [10847151] (imputed)	N
692	chr8	14155072	14155073	rs10089596	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	8p22	intergenic	rs10089596-C	0.14163	1E-7		5.301	z score increase	Illumina [18485882] (imputed)	N
693	chr8	14173973	14173974	rs6990042	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	8p22	NR	rs6990042-G	NR	2E-6		0.012	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
693	chr8	14173973	14173974	rs6990042	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	8p22	Intergenic	rs6990042-T	0.54013092748942	1E-8		0.01614885	unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
693	chr8	14173973	14173974	rs6990042	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	8p22	SGCZ	rs6990042-G	0.461	8E-7	(EA)	0.016	[0.0095-0.0221] kg/m2 increase	Affymetrix, Illumina [2550021]	N
693	chr8	14173973	14173974	rs6990042	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	8p22	SGCZ	rs6990042-G	0.461	5E-6	(EA, men)	0.019	[0.011-0.028] kg/m2 increase	Affymetrix, Illumina [2550021]	N
693	chr8	14173973	14173974	rs6990042	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	8p22	SGCZ	rs6990042-G	0.455	4E-7		0.016	[0.0094-0.0216] kg/m2 increase	Affymetrix, Illumina [2550021]	N
693	chr8	14217805	14217806	rs10092992	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	8p22		rs10092992-G	NR	1E-9		0.0119	[0.0082-0.0156] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
693	chr8	14238840	14238841	rs13263674	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	8p22	NR	rs13263674-G	0.2898	5E-10		0.01705551	[0.012-0.022] unit increase	Affymetrix [10549349] (imputed)	N
693	chr8	14241595	14241596	rs34727251	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	8p22		rs34727251-?	NR	2E-8		0.018	unit decrease	NR [NR]	N
693	chr8	14244214	14244215	rs3860043	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	8p22	NR	rs3860043-?	NR	4E-6				Affymetrix [NR]	N
693	chr8	14273817	14273818	rs116939006	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (negative Marder score)	1,390 European ancestry cases	NA	8p22		rs116939006-C	NR	2E-6	(GLM)	3.5749	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
693	chr8	14273997	14273998	rs13264759	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	8p22	NR	rs13264759-?	NR	5E-12				Affymetrix [~ 8270000] (imputed)	N
693	chr8	14279445	14279446	rs73219758	30846698	Dashti HS	2019-03-07	Nat Commun	Genome-wide association study identifies genetic loci for self-reported habitual sleep duration supported by accelerometer-derived estimates.	Sleep duration	446,118 European ancestry individuals	47,180  adults, 10,554 children or adolescents	8p22	NR	rs73219758-G	NR	5E-11		0.906	unit increase	Affymetrix [14661600] (imputed)	N
694	chr8	14291954	14291955	rs67934334	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	8p22	SGCZ	rs67934334-G	0.373766	4E-8		0.0108581	[0.007-0.0147] unit decrease	Affymetrix [NR] (imputed)	N
694	chr8	14315353	14315354	rs184140419	30942860	Shin J	2019-04-03	J Clin Endocrinol Metab	Novel genetic locus of visceral fat and systemic inflammation.	Visceral fat	1589 French-Canadian ancestry individuals	NA	8p22	SGC	rs184140419-A	NR	9E-6	(adjusted for total body fat)	0.305	[0.17-0.44] unit decrease	Illumina [8511049] (imputed)	N
694	chr8	14357746	14357747	rs1947707	34620984	Skuladottir AT	2021-10-07	Commun Biol	A genome-wide meta-analysis uncovers six sequence variants conferring risk of vertigo.	Vertigo	48,072 European ancestry cases, 894,541 European ancestry controls	NA	8p22		rs1947707-G	NR	3E-6		1.03603		Affymetrix, Illumina [62056310] (imputed)	N
694	chr8	14389480	14389481	rs1903595	20526338	Johnson AD	2010-06-06	Nat Genet	Genome-wide meta-analyses identifies seven loci associated with platelet aggregation in response to agonists.	Platelet aggregation	Up to 3,991 European ancestry individuals	Up to 840 African American individuals	8p22	SGCZ	rs1903595-G	0.303	5E-6	(ephinephrine)			Affymetrix, Illumina [~ 2330000] (imputed)	N
695	chr8	14433114	14433115	rs17249839	31596875	Traylor M	2019-10-09	PLoS One	Genetic associations with radiological damage in rheumatoid arthritis: Meta-analysis of seven genome-wide association studies of 2,775 cases.	Joint damage in rheumatoid arthritis	2,527 European ancestry individuals	NA	8p22	SGCZ	rs17249839-?	NR	4E-6				Affymetrix, Illumina [2723488] (imputed)	N
695	chr8	14468524	14468525	rs10088748	31596875	Traylor M	2019-10-09	PLoS One	Genetic associations with radiological damage in rheumatoid arthritis: Meta-analysis of seven genome-wide association studies of 2,775 cases.	Joint damage in rheumatoid arthritis	2,527 European ancestry individuals, 196 African ancestry individuals, 52 individuals	NA	8p22	SGCZ	rs10088748-?	NR	9E-7				Affymetrix, Illumina [4802696] (imputed)	N
695	chr8	14486838	14486839	rs73664412	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8p22	NR	rs73664412-C	0.02091	2E-8	(GALE)	0.1239	NR unit decrease	Illumina [1671387] (imputed)	N
695	chr8	14504787	14504788	rs73664420	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8p22	NR	rs73664420-C	0.02091	2E-8	(GALE)	0.1239	NR unit decrease	Illumina [1671387] (imputed)	N
695	chr8	14517293	14517294	rs11203649	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	8p22	SGCZ	rs11203649-A	0.177	5E-7	(Urinary free epinephrine )	0.05	[NR] nmol/d increase	Illumina [899892]	N
696	chr8	14550155	14550156	rs11989868	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	8p22	SGCZ	rs11989868-C	0.386	2E-6	(sICAM-1 )	0.03	[NR] pg/mL increase	Illumina [899892]	N
696	chr8	14570437	14570438	rs34835594	34075027	Gonda X	2021-06-01	Transl Psychiatry	Genetic underpinnings of affective temperaments: a pilot GWAS investigation identifies a new genome-wide significant SNP for anxious temperament in ADGRB3 gene.	Depressive temperament	775 European ancestry individuals	NA	8p22		rs34835594-A	NR	9E-6		0.02743	unit increase	Illumina [2550710] (imputed)	N
696	chr8	14631894	14631895	rs41416745	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	8p22	NR	rs41416745-?	NR	6E-136				Affymetrix [NR]	N
696	chr8	14651358	14651359	rs537260356	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	8p22	SGCZ	rs537260356-A	0.0014	5E-6		0.668	[0.38-0.95] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
696	chr8	14668032	14668033	rs146790986	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (negative Marder score)	1,390 European ancestry cases	NA	8p22		rs146790986-C	NR	3E-6	(GLM)	3.6312	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
697	chr8	14686996	14686997	rs17120351	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	8p22	NR	rs17120351-?	NR	4E-10				Affymetrix [NR]	N
697	chr8	14731542	14731543	rs73201286	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	8p22		rs73201286-?	NR	2E-10				Affymetrix [NR] (imputed)	N
697	chr8	14748610	14748611	rs34895619	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8p22	NR	rs34895619-A	0.01568	3E-8	(TNC)	0.05678	NR unit increase	Illumina [1671387] (imputed)	N
697	chr8	14795875	14795876	rs7014300	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	8p22	Intergenic	rs7014300-A	0.1952	3E-9	(MTAG)	0.0124	[0.0083-0.0165] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
697	chr8	14808001	14808002	rs17470444	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex x age interaction (4df test)	up to 43,776 European ancestry men aged <50, up to 50,526 European ancestry women aged <50, up to 69,944 European ancestry men aged >50, up to 88,129 European ancestry women aged >50	NA	8p22	SGCZ, MIR383	rs17470444-A	0.713	6E-6				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
697	chr8	14808001	14808002	rs17470444	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex interaction	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	8p22	SGCZ	rs17470444-A	0.71	4E-7				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
698	chr8	14811168	14811169	rs17608413	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	8p22	Intergenic	rs17608413-T	0.4314	9E-9	(MTAG)	0.0104	[0.0069-0.0139] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
698	chr8	14832271	14832272	rs13261120	29535761	Haaland OA	2018-02-26	Front Genet	A Genome-Wide Search for Gene-Environment Effects in Isolated Cleft Lip with or without Cleft Palate Triads Points to an Interaction between Maternal Periconceptional Vitamin Use and Variants in ESRRG.	Cleft lip with or without cleft palate (maternal periconceptional vitamin use interaction)	up to 825 European ancestry case-parent trios, up to 1,024 Asian ancestry case-parent trios, up to 59 case-parent trios	NA	8p22	SGCZ	rs13261120-?		3E-6	(Asian)	2.45	[1.68-3.57]	Illumina [341191]	N
698	chr8	14853087	14853088	rs17608649	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA		Intergenic	rs17608649-C	0.7565	8E-9	(MTAG)	0.0088	[0.0059-0.0117] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
698	chr8	14853780	14853781	rs4427170	23594818	Ikeda M	2013-04-17	Neuropsychopharmacology	Evidence for shared genetic risk between methamphetamine-induced psychosis and schizophrenia.	Methamphetamine dependence	236 Japanese ancestry cases, 864 Japanese ancestry controls	NA	8p22	SGCZ, TUSC3, MIR383	rs4427170-T	0.3947	4E-6		1.629	[NR]	Affymetrix [244224]	N
698	chr8	14856682	14856683	rs144371075	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		SGCZ	rs144371075-?	NR	2E-9	(female)	0.508765	[NR] unit increase	Affymetrix [NR] (imputed)	N
698	chr8	14879391	14879392	rs7846057	34737425	Mansour Aly D	2021-11-04	Nat Genet	Genome-wide association analyses highlight etiological differences underlying newly defined subtypes of diabetes.	Severe insulin-deficient type 2 diabetes	1,193 Scandinavian ancestry cases, 2,744 Scandinavian ancestry controls	NA	8p22	SGCZ	rs7846057-C	0.069	4E-6		0.621	[0.508 - 0.76]	Illumina [5398302] (imputed)	N
698	chr8	14912788	14912789	rs56864313	33527407	Truong T	2021-02-02	Int J Cancer	Multiethnic genome-wide association study of differentiated thyroid cancer in the EPITHYR consortium.	Differentiated thyroid cancer	1,554 European ancestry cases, 1,973 European ancestry controls, 301 Oceanian ancestry cases, 348 Oceanian ancestry controls	NA	8p22	NR	rs56864313-G	0.15	8E-6				Illumina [6479975] (imputed)	N
699	chr8	15000765	15000766	rs2198596	27802415	Salvi E	2016-10-31	Hypertension	Genome-Wide and Gene-Based Meta-Analyses Identify Novel Loci Influencing Blood Pressure Response to Hydrochlorothiazide.	Diastolic blood pressure response to hydrochlorothiazide in hypertension	1,739 European ancestry individuals	430 African American individuals	8p22	SGCZ	rs2198596-C	0.91	8E-7	(EA)	1.3	[NR] mmHg decrease	Affymetrix, Illumina [up to 2500000] (imputed)	N
699	chr8	15070110	15070111	rs28450200	35115690	Lopera-Maya EA	2022-02-03	Nat Genet	Effect of host genetics on the gut microbiome in 7,738 participants of the Dutch Microbiome Project.	Gut microbiota abundance (k_Bacteria.p_Bacteroidetes.c_Bacteroidia.o_Bacteroidales.f_Rikenellaceae.g_Alistipes.s_Alistipes_sp_AP11)	7,738 European ancestry individuals	NA	8p22		rs28450200-C	0.17385253240939003	1E-8		0.1933092	[0.13-0.26] unit increase	Illumina [5584686] (imputed)	N
700	chr8	15128729	15128730	rs4372005	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	8p22	Intergenic	rs4372005-A	0.8517	7E-9	(MTAG)	0.0146	[0.0097-0.0195] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
700	chr8	15128729	15128730	rs4372005	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	8p22	Intergenic	rs4372005-T	0.1483	2E-8		0.0154	[0.01-0.021] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
700	chr8	15187530	15187531	rs180936053	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	8p22	NR	rs180936053-?	NR	7E-9				Illumina [7760689] (imputed)	N
700	chr8	15197416	15197417	rs12676170	23322567	Lopes MC	2013-01-15	Invest Ophthalmol Vis Sci	Identification of a candidate gene for astigmatism.	Corneal astigmatism	22,100 European ancestry individuals		8p22	NR	rs12676170-A		8E-6		0.054	[NR] unit decrease	Affymetrix, Illumina [2800000] (imputed)	N
701	chr8	15216193	15216194	rs13253745	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	8p22	NR	rs13253745-C	0.177	4E-6	(IFNalpha_STAT4_of_CD4p_T)			Illumina [5084123] (imputed)	N
701	chr8	15225919	15225920	rs3924449	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8p22	TUSC3	rs3924449-?	NR	5E-6	(SM 24:1)	0.16936661	[0.097-0.242] unit decrease	Affymetrix [at least 2500000] (imputed)	N
701	chr8	15244846	15244847	rs10109012	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	8p22	Intergenic	rs10109012-T	0.5981	2E-9	(MTAG)	0.0101	[0.0068-0.0134] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
701	chr8	15244846	15244847	rs10109012	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	8p22	Intergenic	rs10109012-T	0.6044	4E-8	(MTAG)	0.0074	[0.0049-0.0099] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
701	chr8	15315517	15315518	rs36148756	28644415	Guenard F	2017-06-23	Nutrients	Genome-Wide Association Study of Dietary Pattern Scores.	Prudent dietary pattern	141 individuals	NA	8p22	TUSC3	rs36148756-?		5E-6				Illumina [2668805]	N
701	chr8	15325667	15325668	rs2172820	24483146	Li L	2014-02-01	BMC Genomics	Discovery of genetic biomarkers contributing to variation in drug response of cytidine analogues using human lymphoblastoid cell lines.	Response to cytadine analogues (cytosine arabinoside)	60 European ancestry lymphoblastoid cell lines, 54 African American lymphoblastoid cell lines, 60 Han Chinese ancestry lymphoblastoid cell lines	NA	8p22	TUSC3	rs2172820-?		2E-6				Affymetrix, Illumina [1348798]	N
702	chr8	15370690	15370691	rs35450770	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Suicide attempts	3,470 European ancestry cases, 150,090 European ancestry controls	NA	8p22	NR	rs35450770-G	0.12	4E-6		1.754386	[-0.46041-3.96919]	Affymetrix [at least 143006] (imputed)	N
702	chr8	15392591	15392592	rs141538029	34779240	Cheng B	2021-11-01	Bone Joint Res	Gut microbiota is associated with bone mineral density : an observational and genome-wide environmental interaction analysis in the UK Biobank cohort.	Femur total bone mineral density x gut microbiota (genus Lactococcus) interaction	2,293 European ancestry individuals	NA	8p22		rs141538029-C	NR	3E-11		0.64	[0.45-0.83] unit decrease	Affymetrix [509886] (imputed)	N
702	chr8	15393347	15393348	rs146474675	34779240	Cheng B	2021-11-01	Bone Joint Res	Gut microbiota is associated with bone mineral density : an observational and genome-wide environmental interaction analysis in the UK Biobank cohort.	Femur total bone mineral density x gut microbiota (genus Lactococcus) interaction	2,293 European ancestry individuals	NA	8p22		rs146474675-C	NR	2E-11		0.64	[0.45-0.83] unit decrease	Affymetrix [509886] (imputed)	N
702	chr8	15411894	15411895	rs143734051	34779240	Cheng B	2021-11-01	Bone Joint Res	Gut microbiota is associated with bone mineral density : an observational and genome-wide environmental interaction analysis in the UK Biobank cohort.	Femur total bone mineral density x gut microbiota (genus Lactococcus) interaction	2,293 European ancestry individuals	NA	8p22		rs143734051-A	NR	2E-11		0.644	[0.46-0.83] unit decrease	Affymetrix [509886] (imputed)	N
702	chr8	15418993	15418994	rs140404020	34779240	Cheng B	2021-11-01	Bone Joint Res	Gut microbiota is associated with bone mineral density : an observational and genome-wide environmental interaction analysis in the UK Biobank cohort.	Femur total bone mineral density x gut microbiota (genus Lactococcus) interaction	2,293 European ancestry individuals	NA	8p22		rs140404020-A	NR	1E-11		0.649	[0.46-0.84] unit decrease	Affymetrix [509886] (imputed)	N
702	chr8	15434455	15434456	rs71500718	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		8p22	TUSC3	rs71500718-G	0.480766	5E-8		0.00750839	[0.0048-0.0102] unit decrease	Affymetrix [12370749]	N
702	chr8	15458736	15458737	rs147963206	34779240	Cheng B	2021-11-01	Bone Joint Res	Gut microbiota is associated with bone mineral density : an observational and genome-wide environmental interaction analysis in the UK Biobank cohort.	Femur total bone mineral density x gut microbiota (genus Lactococcus) interaction	2,293 European ancestry individuals	NA	8p22		rs147963206-A	NR	2E-11		0.64	[0.45-0.83] unit decrease	Affymetrix [509886] (imputed)	N
703	chr8	15467272	15467273	rs144400955	34779240	Cheng B	2021-11-01	Bone Joint Res	Gut microbiota is associated with bone mineral density : an observational and genome-wide environmental interaction analysis in the UK Biobank cohort.	Femur total bone mineral density x gut microbiota (genus Lactococcus) interaction	2,293 European ancestry individuals	NA	8p22		rs144400955-G	NR	3E-11		0.634	[0.45-0.82] unit decrease	Affymetrix [509886] (imputed)	N
703	chr8	15472924	15472925	rs76830538	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (negative Marder score)	1,390 European ancestry cases	NA	8p22		rs76830538-C	NR	2E-8	(GLM)	4.4144	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
703	chr8	15474248	15474249	rs148379500	34779240	Cheng B	2021-11-01	Bone Joint Res	Gut microbiota is associated with bone mineral density : an observational and genome-wide environmental interaction analysis in the UK Biobank cohort.	Femur total bone mineral density x gut microbiota (genus Lactococcus) interaction	2,293 European ancestry individuals	NA	8p22		rs148379500-C	NR	3E-11		0.639	[0.45-0.83] unit decrease	Affymetrix [509886] (imputed)	N
703	chr8	15500966	15500967	rs12541402	28300201	Hernandez-Pacheco N	2017-03-16	Sci Rep	Identification of a novel locus associated with skin colour in African-admixed populations.	Skin pigmentation	285 Puerto Rican individuals	373 African American individuals	8p22	NR	rs12541402-C	NR	6E-6	(Hispanic)	2.9	[4.13-1.67] unit decrease	Affymetrix [14000000] (imputed)	N
703	chr8	15532584	15532585	rs4831760	22424883	Imboden M	2012-03-15	J Allergy Clin Immunol	Genome-wide association study of lung function decline in adults with and without asthma.	Pulmonary function decline	1,441 European ancestry asthma cases, 2,677 European ancestry controls	1,160 European ancestry asthma cases, 10,858 European ancestry controls	8p22	TUSC3	rs4831760-?	NR	5E-8	(FEV1/FVC decline in asthmatics)	0.222	[0.14-0.3] unit increase	Illumina [~ 2500000] (imputed)	N
703	chr8	15535225	15535226	rs354508	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	8p22	NA	rs354508-T	0.1617	3E-10		0.0146	[0.01-0.019] unit decrease	NR [~ 27400000] (imputed)	N
703	chr8	15566163	15566164	rs12679528	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	8p22		rs12679528-?	NR	4E-11				NR [~ 8900000] (imputed)	N
703	chr8	15594179	15594180	rs111262133	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	8p22	TUSC3	rs111262133-G	0.0213817535685742	7E-6	(G_Odoribacter_HB)	0.993825	[0.56-1.43] unit decrease	Illumina [7711310] (imputed)	N
704	chr8	15599713	15599714	rs352759	29559929	Amare AT	2018-03-06	Front Psychiatry	Association of the Polygenic Scores for Personality Traits and Response to Selective Serotonin Reuptake Inhibitors in Patients with Major Depressive Disorder.	Response to SSRI in MDD or openness	865 individuals with SSRI response data, 260,861 individuals with personality trait data	NA	8p22	TUSC3	rs352759-T	NR	6E-7				NR [NR] (imputed)	N
704	chr8	15607312	15607313	rs2543154	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	8p22	NR	rs2543154-?	NR	3E-10				Affymetrix [~ 8270000] (imputed)	N
704	chr8	15613707	15613708	rs7830913	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	8p22	NR	rs7830913-?	NR	2E-6		4.785	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
704	chr8	15629657	15629658	rs12682188	32009195	Condreay LD	2020-02-03	Rheumatol Int	Pharmacogenetic investigation of efficacy response to mepolizumab in eosinophilic granulomatosis with polyangiitis.	Accrued duration of remission in mepolizumab-treated eosinophilic granulomatosis with polyangiitis	61 individuals	NA	8p22	NR	rs12682188-?	NR	8E-6		0.8264	[0.49-1.16] unit increase	Affymetrix [7154205] (imputed)	N
704	chr8	15635034	15635035	rs201581573	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (PANSS score)	1,390 European ancestry individuals	NA	8p22		rs201581573-TA	NR	2E-6	(GLM)	10.6514	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
704	chr8	15644224	15644225	rs145847018	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (positive Marder score)	1,390 European ancestry cases	NA	8p22		rs145847018-G	NR	3E-6	(GLM)	3.2111	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
704	chr8	15644558	15644559	rs352766	30456828	Khramtsova EA	2018-11-20	Am J Med Genet B Neuropsychiatr Genet	Sex differences in the genetic architecture of obsessive-compulsive disorder.	Obsessive-compulsive disorder	1,249 European ancestry male cases, 2,789 European ancestry male controls, 1,525 European ancestry female cases, 4,307 European ancestry female controls	NA	8p22	Intergenic	rs352766-?		4E-6	(female)	0.296	[0.17-0.42] unit decrease	NR [~ 5500000] (imputed)	N
704	chr8	15654142	15654143	rs117019455	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (negative Marder score)	1,390 European ancestry cases	NA	8p22		rs117019455-G	NR	2E-7	(GLM)	4.0451	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
704	chr8	15665611	15665612	rs240657	22449649	Loo SK	2012-02-28	J Am Acad Child Adolesc Psychiatry	Genome-wide association study of intelligence: additive effects of novel brain expressed genes.	Intelligence	656 European ancestry individuals from ADHD families	NA	8p22	TUSC3	rs240657-?	NR	2E-6	(Average Intelligence)	5.22	[3.10-7.34] unit decrease	Illumina [795637]	N
704	chr8	15703249	15703250	rs1017660	29478026	Shahin MH	2018-02-24	J Am Heart Assoc	Genome-Wide Association Approach Identified Novel Genetic Predictors of Heart Rate Response to ?-Blockers.	Heart rate response to beta blockers (atenolol add-on therapy)	198 European American hypertensive individuals, 127 African American hypertensive individuals	NA	8p22	NR	rs1017660-C	0.43	8E-6	(AA)	4.0	[2.31-5.69] bpm increase	Illumina [at least 1100000] (imputed)	N
704	chr8	15716945	15716946	rs7831275	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	8p22	TUSC3	rs7831275-C	0.154133523880069	9E-7	(F_Coriobacteriaceae_RNT)	0.155871	[0.094-0.218] unit decrease	Illumina [7711310] (imputed)	N
705	chr8	15751662	15751663	rs181179170	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	8p22	NR	rs181179170-?	NR	5E-8				Illumina [7760689] (imputed)	N
705	chr8	15751662	15751663	rs181179170	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	8p22	NR	rs181179170-?	NR	1E-8				Illumina [7760689] (imputed)	N
705	chr8	15763817	15763818	rs10503555	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	8p22	TUSC3	rs10503555-A	0.5568	4E-8		0.0077774	[0.005-0.0106] unit increase	Affymetrix [12370749]	N
705	chr8	15812141	15812142	rs188774663	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Rheumatic fever	1,115 European ancestry cases, 88,076 European ancestry controls	NA	8p22	NR	rs188774663-?	NR	1E-6		1.0058	[0.65-1.36] unit decrease	Illumina [at least 560000] (imputed)	N
705	chr8	15834037	15834038	rs117609170	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	8p22	NR	rs117609170-T	NR	1E-9		0.0605	[0.041-0.08] unit decrease	Affymetrix [9000000] (imputed)	N
705	chr8	15843194	15843195	rs75000616	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Paracentral lobule volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	8p22	NR	rs75000616-?		2E-6				Illumina [4322238] (imputed)	N
706	chr8	15966084	15966085	rs6985143	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	8p22	NR	rs6985143-C	NR	3E-8	(GEE model)	1.1407	[0.74-1.55] unit decrease	NR [NR] (imputed)	N
706	chr8	15967627	15967628	rs138749399	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Insulin-like growth factor 1 levels	435,516 European ancestry individuals	NA	8p22		rs138749399-?	NR	1E-9		0.126478	[0.087-0.166] unit decrease	NR [9800000] (imputed)	N
706	chr8	15974135	15974136	rs78553524	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8p22	NR	rs78553524-T	0.02439	6E-9	(HP)	3.463	NR unit increase	Illumina [1671387] (imputed)	N
706	chr8	15974135	15974136	rs78553524	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8p22	NR	rs78553524-T	0.02439	2E-9	(EMILIN2)	0.1007	NR unit increase	Illumina [1671387] (imputed)	N
707	chr8	16012593	16012594	rs41341748	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	8p22	MSR1	rs41341748-A	NR	2E-8		0.0748402	[0.049-0.101] unit decrease	Affymetrix [319769] (imputed)	N
707	chr8	16012593	16012594	rs41341748	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	8p22	MSR1	rs41341748-A	NR	5E-8		0.0731095	[0.047-0.099] unit decrease	Affymetrix [319769] (imputed)	N
707	chr8	16049655	16049656	rs73665257	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LGALS3BP	5,365 Icelandic ancestry individuals	NA	8p22		rs73665257-G	0.05242	4E-19		0.381144	[0.3-0.46] unit increase	Illumina [7506463] (imputed)	N
707	chr8	16050870	16050871	rs28491433	23696881	Wood AR	2013-05-16	PLoS One	Imputation of variants from the 1000 Genomes Project modestly improves known associations and can identify low-frequency variant-phenotype associations undetected by HapMap based imputation.	Blood protein levels	up to 1,209 European ancestry individuals	NA	8p22	MSR1	rs28491433-?	NR	6E-10	(90K Protein)			Illumina [up to 10879115] (imputed)	N
707	chr8	16058904	16058905	rs13340561	26365420	Mbarek H	2015-09-14	Am J Med Genet B Neuropsychiatr Genet	The genetics of alcohol dependence: Twin and SNP-based heritability, and genome-wide association study based on AUDIT scores.	Alcohol dependence	1,374 European ancestry cases and 6,468 European ancestry controls from 7,694 twin pairs	NA	8p22	MSR1	rs13340561-G	0.03	9E-6		1.6949153	[1.48-1.91]	Affymetrix, Illumina, Perlegen [6464174] (imputed)	N
707	chr8	16065556	16065557	rs7002619	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	8p22	NR	rs7002619-T	NR	4E-6		1.1	[NR]	Illumina [7158791] (imputed)	N
707	chr8	16074804	16074805	rs138542577	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Plasma Blast-Plasma Cell %B cell	3,658 Sardinian (founder/genetic isolate) ancestry individuals	NA	8p22		rs138542577-C	0.0376	4E-8		0.3534	[0.23-0.48] unit increase	Illumina [18238642] (imputed)	N
707	chr8	16120100	16120101	rs149371970	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LGALS3BP	5,365 Icelandic ancestry individuals	NA	8p22		rs149371970-T	0.01423	1E-22		0.776997	[0.62-0.93] unit increase	Illumina [7506463] (imputed)	N
707	chr8	16120100	16120101	rs149371970	31320639	Hillary RF	2019-07-18	Nat Commun	Genome and epigenome wide studies of neurological protein biomarkers in the Lothian Birth Cohort 1936.	Neurological blood protein biomarker levels	750 European ancestry individuals	NA	8p22	MSR1	rs149371970-T	0.0156	1E-14	(MSR1)	2.11173	[1.57-2.65] unit decrease	Illumina [8683751] (imputed)	N
708	chr8	16124297	16124298	rs958697	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	8p22	NR	rs958697-?	NR	1E-9				Affymetrix [NR]	N
708	chr8	16179166	16179167	rs12675862	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	8p22	NR	rs12675862-?	NR	3E-8				Illumina [7760689] (imputed)	N
709	chr8	16279179	16279180	rs34893217	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	8p22	MSR1	rs34893217-G	0.893654	2E-8		0.0180277	[0.012-0.024] unit increase	Affymetrix [NR] (imputed)	N
710	chr8	16434875	16434876	rs769886099	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	8p22	MSR1	rs769886099-A	0.001	9E-6		1.3739	[0.77-1.98] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
710	chr8	16452185	16452186	rs186768002	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LGALS3BP	5,365 Icelandic ancestry individuals	NA	8p22		rs186768002-T	0.01724	2E-14		0.565427	[0.42-0.71] unit decrease	Illumina [7506463] (imputed)	N
711	chr8	16559460	16559461	rs146535276	33168928	Wenric S	2020-11-10	Pharmacogenomics J	Rapid response to the alpha-1 adrenergic agent phenylephrine in the perioperative period is impacted by genomics and ancestry.	Rapid response to perioperative phenylephrine (change in diastolic blood pressure)	1,082 African American individuals, 1,112 European ancestry individuals, 1,505 Hispanic individuals	NA	8p22	NR	rs146535276-?		1E-8	(African American)	1.27	[0.84-1.7] unit decrease	Illumina [42246687] (imputed)	N
711	chr8	16560525	16560526	rs553962214	28604731	Hammerschlag AR	2017-06-12	Nat Genet	Genome-wide association analysis of insomnia complaints identifies risk genes and genetic overlap with psychiatric and metabolic traits.	Daytime sleepiness	112,717 European ancestry cases and controls	NA	8p22	NR	rs553962214-C	0.001	1E-8		0.41	[0.27-0.55] unit increase	Affymetrix [at least 12428592] (imputed)	N
711	chr8	16595388	16595390	rs1263572530	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8p22	NR	rs1263572530-C	0.01045	2E-8	(LRG1)	0.06162	NR unit increase	Illumina [1671387] (imputed)	N
711	chr8	16618540	16618541	rs181829488	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		AC011586.2	rs181829488-?	NR	2E-9	(female)	0.47646	[NR] unit increase	Affymetrix [NR] (imputed)	N
711	chr8	16625171	16625172	rs6586877	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	8p22	FGF20	rs6586877-T	0.441	1E-8		0.0067	[0.0043-0.0091] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
711	chr8	16643822	16643823	rs631290	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in diabetes mellitus	153 Korean ancestry cases, 5,161 Korean ancestry controls	NA	8p22		rs631290-G	0.2762	9E-7		1.822	[1.434-2.315]	Affymetrix [7975321] (imputed)	N
712	chr8	16682745	16682746	rs73201717	25187353	Goldstein JI	2014-09-04	Nat Commun	Clozapine-induced agranulocytosis is associated with rare HLA-DQB1 and HLA-B alleles.	Clozapine-induced agranulocytosis	161 European ancestry cases, 1,196 European ancestry clozapine-treated and untreated controls	NA	8p22	intergenic	rs73201717-T	0.159	8E-6		2.08	[1.76-2.40]	Illumina [8809853] (imputed)	N
712	chr8	16689934	16689935	rs11203803	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 4 levels	252 European ancestry individuals	NA	8p22		rs11203803-G	NR	6E-6		1.0188	[0.59-1.45] unit increase	Illumina [NR] (imputed)	N
712	chr8	16697090	16697091	rs591323	28892059	Chang D	2017-09-11	Nat Genet	A meta-analysis of genome-wide association studies identifies 17 new Parkinson's disease risk loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	5,851 European ancestry cases, 5,866 European ancestry controls	8p22	MICU3	rs591323-G	0.726	2E-11		1.098901	[1.06-1.12]	Illumina [11933700] (imputed)	N
712	chr8	16697090	16697091	rs591323	25064009	Nalls MA	2014-07-27	Nat Genet	Large-scale meta-analysis of genome-wide association data identifies six new risk loci for Parkinson's disease.	Parkinson's disease	13,708 European ancestry cases, 95,282 European ancestry controls	5,353 European ancestry cases, 5,551 European ancestry controls	8p22	FGF20	rs591323-G	0.725	7E-8		1.09	[1.06-1.12]	Illumina [7893274] (imputed)	N
712	chr8	16697592	16697593	rs620513	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	8p22	FGF20	rs620513-T	0.2682	3E-15		0.0856	[0.064-0.107] unit decrease	NR [7784415] (imputed)	N
712	chr8	16712360	16712361	rs11203810	32201043	Smeland OB	2020-02-08	Biol Psychiatry	Genome-wide Association Analysis of Parkinson's Disease and Schizophrenia Reveals Shared Genetic Architecture and Identifies Novel Risk Loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	NA	8p22	RN7SL474P	rs11203810-T		2E-8		0.0895	[0.058-0.121] unit decrease	Illumina [NR]	N
712	chr8	16716347	16716348	rs1521365	26174813	Alemany S	2015-07-14	Am J Med Genet B Neuropsychiatr Genet	New suggestive genetic loci and biological pathways for attention function in adult attention-deficit/hyperactivity disorder.	Attention function in attention deficit hyperactive disorder	479 European ancestry adult cases	NA	8p22	FGF20	rs1521365-T	0.06	4E-6	(HRT)	41.3	[23.84-58.76] unit decrease	Illumina [799713]	N
713	chr8	16789234	16789235	rs1523643	25085501	Bunyavanich S	2014-08-02	BMC Med Genomics	Integrated genome-wide association, coexpression network, and expression single nucleotide polymorphism analysis identifies novel pathway in allergic rhinitis.	Allergic rhinitis in asthma	623 European ancestry cases, 1029 Latino cases, 399 African American/Afro-Caribbean cases, 488 European ancestry controls, 545 Latino controls, 162 African American/Afro-Caribbean controls	NA	8p22	FGF20	rs1523643-?	NR	3E-7	(AA)			Affymetrix, Illumina [NR] (imputed)	N
713	chr8	16793150	16793150	rs146787096	32239439	Barr PB	2020-04-01	Behav Genet	A Family-Based Genome Wide Association Study of Externalizing Behaviors.	Externalizing behaviour score	7,568 European ancestry individuals, 3,274 African ancestry individuals, 4,270 European and African ancestry individuals	NA	8p22	NR	rs146787096-?	NR	8E-8		5.374	NR z score decrease	Affymetrix, Illumina [up to 15537641] (imputed)	N
713	chr8	16798122	16798123	rs1094732	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Inflammatory skin disease	2,079 European ancestry atopic dermatitis cases, 4,212 European ancestry psoriasis cases, 11,899 European ancestry controls	NA	8p22	RP11-13N12.1	rs1094732-?	NR	9E-6	(Atopic dermatitis)			Affymetrix, Illumina [~ 5200000]	N
713	chr8	16822324	16822325	rs74414670	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	8p22	NR	rs74414670-?	NR	5E-6		0.0554	[0.032-0.079] unit increase	Illumina [at least 560000] (imputed)	N
713	chr8	16839010	16839011	rs17488730	34518958	Sanders AR	2021-09-13	Arch Sex Behav	Genome-Wide Linkage and Association Study of Childhood Gender Nonconformity in Males.	Childhood gender nonconformity	409 European ancestry concordant male sibling pairs	NA	8p22		rs17488730-C	0.948	1E-6		0.102	[0.061-0.143] unit increase	Affymetrix [6030650] (imputed)	N
714	chr8	16922012	16922013	rs2285261	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	8p22		rs2285261-?	NR	2E-21				NR [~ 8900000] (imputed)	N
714	chr8	16929634	16929635	rs10090288	22064162	Edwards AC	2011-11-05	Psychiatr Genet	Genome-wide association study of comorbid depressive syndrome and alcohol dependence.	Depression and alcohol dependence	467 European ancestry cases, 407 European ancestry controls	NA	8p22	EFHA2	rs10090288-?	NR	8E-6		2.55	[1.69-3.84]	Illumina [876476]	N
714	chr8	16988954	16988955	rs10093037	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	8p22	NR	rs10093037-?	NR	2E-12		7.028	NR z score decrease	Illumina [at least 830937] (imputed)	N
714	chr8	16996434	16996435	rs4922265	25524916	Palmer ND	2014-12-18	Diabetes	Genetic Variants Associated With Quantitative Glucose Homeostasis Traits Translate to Type 2 Diabetes in Mexican Americans: The GUARDIAN (Genetics Underlying Diabetes in Hispanics) Consortium.	Glucose homeostasis traits	up to 4,176 Mexican American individuals	NA	8p22	intergenic	rs4922265-?		7E-6	(AIRg)	2.11	[1.15-3.07] unit increase	Illumina [693128]	N
714	chr8	17013198	17013199	rs3808645	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	8p22		rs3808645-T	0.8439	2E-8	(conditional-joint)	0.0108	[0.0071-0.0145] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
714	chr8	17013198	17013199	rs3808645	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	8p22	Intergenic	rs3808645-T	0.8439	8E-9	(MTAG)	0.0104	[0.0069-0.0139] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
714	chr8	17029656	17029657	rs4921739	32201043	Smeland OB	2020-02-08	Biol Psychiatry	Genome-wide Association Analysis of Parkinson's Disease and Schizophrenia Reveals Shared Genetic Architecture and Identifies Novel Risk Loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	NA	8p22	ZDHHC2	rs4921739-T		6E-6		0.0813	[0.046-0.117] unit decrease	Illumina [NR]	N
714	chr8	17036200	17036201	rs17687067	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	8p22	NR	rs17687067-?	NR	7E-10		1.0647019	[1.04-1.08]	Affymetrix, Illumina [12447948] (imputed)	N
714	chr8	17036200	17036201	rs17687067	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	8p22	ZDHHC2	rs17687067-C	NR	4E-8	(EA)	1.0793308	[1.05-1.11]	Illumina [6627481] (imputed)	N
714	chr8	17036200	17036201	rs17687067	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	8p22	ZDHHC2	rs17687067-C	NR	2E-10		1.0741138	[1.05-1.1]	Illumina [6627481] (imputed)	N
714	chr8	17036200	17036201	rs17687067	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	8p22	MTMR7, VPS37A, ZDHHC2	rs17687067-C	NR	3E-12		1.081081	[1.06-1.1]	Affymetrix, Illumina [up to 5107227] (imputed)	N
714	chr8	17036200	17036201	rs17687067	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	8p22	NR	rs17687067-C	NR	2E-7		1.0752687	[NR]	Illumina [7158791] (imputed)	N
715	chr8	17042415	17042416	rs2517086	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	8p22		rs2517086-C	0.5721	8E-10		0.0088	[0.0061-0.0115] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
715	chr8	17075254	17075255	rs11784910	27802415	Salvi E	2016-10-31	Hypertension	Genome-Wide and Gene-Based Meta-Analyses Identify Novel Loci Influencing Blood Pressure Response to Hydrochlorothiazide.	Systolic blood pressure response to hydrochlorothiazide in hypertension	1,739 European ancestry individuals	430 African American individuals	8p22	ZDHHC2	rs11784910-A	0.95	4E-7	(EA)	2.31	[NR] mmHg increase	Affymetrix, Illumina [up to 2500000] (imputed)	N
715	chr8	17075254	17075255	rs11784910	27802415	Salvi E	2016-10-31	Hypertension	Genome-Wide and Gene-Based Meta-Analyses Identify Novel Loci Influencing Blood Pressure Response to Hydrochlorothiazide.	Diastolic blood pressure response to hydrochlorothiazide in hypertension	1,739 European ancestry individuals	430 African American individuals	8p22	ZDHHC2	rs11784910-A	0.95	4E-7	(EA)	1.48	[NR] mmHg increase	Affymetrix, Illumina [up to 2500000] (imputed)	N
715	chr8	17086600	17086601	rs62497351	31996736	Elsheikh SSM	2020-01-29	Sci Rep	Genome-Wide Association Study of Brain Connectivity Changes for Alzheimer's Disease.	Longitudinal brain connectivity change (global efficiency)	57 European ancestry individuals	NA	8p22	NR	rs62497351-G	NR	2E-6		1.402	unit increase	NR [9015039] (imputed)	N
715	chr8	17133044	17133045	rs10087602	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	8p22		rs10087602-A	NR	9E-6		0.97632	[0.55-1.4] unit increase	Illumina [NR] (imputed)	N
715	chr8	17143829	17143830	rs3793427	17903302	Levy D	2007-09-19	BMC Med Genet	Framingham Heart Study 100K Project: genome-wide associations for blood pressure and arterial stiffness.	Tonometry	644 individuals	NA	8p22	VPS37A	rs3793427-?	NR	2E-6	(FWLTA)			Affymetrix [70897]	N
715	chr8	17157676	17157677	rs3764796	25886283	Chang X	2015-04-17	PLoS One	Genome-wide association study of serum minerals levels in children of different ethnic background.	Calcium levels	5,261 European ancestry children, 3,817 African American ancestry children		8p22	NR	rs3764796-G	NR	4E-6	(EA)	0.06534	[0.038-0.093] mg/dl increase	Illumina [up to 507950]	N
715	chr8	17157676	17157677	rs3764796	25886283	Chang X	2015-04-17	PLoS One	Genome-wide association study of serum minerals levels in children of different ethnic background.	Calcium levels	5,261 European ancestry children, 3,817 African American ancestry children		8p22	NR	rs3764796-G	NR	2E-6		0.0624	[NR] mg/dl increase	Illumina [up to 507950]	N
716	chr8	17170739	17170740	rs10096063	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8p22	VPS37A	rs10096063-?	NR	8E-6	(glucuronate)	0.27410382	[0.15-0.39] unit decrease	Affymetrix [at least 2500000] (imputed)	N
716	chr8	17180524	17180525	rs7813450	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	8p22		rs7813450-?	NR	3E-8				Affymetrix [NR] (imputed)	N
716	chr8	17180582	17180583	rs7820343	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	8p22		rs7820343-?	NR	3E-8				Affymetrix [NR] (imputed)	N
716	chr8	17194829	17194830	rs56198943	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	8p22		rs56198943-?	NR	6E-9				Affymetrix [NR] (imputed)	N
716	chr8	17198729	17198730	rs2285285	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	8p22		rs2285285-?	NR	3E-8				Affymetrix [NR] (imputed)	N
716	chr8	17199609	17199610	rs1989759	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	8p22		rs1989759-?	NR	5E-8				Affymetrix [NR] (imputed)	N
716	chr8	17205576	17205577	rs4921542	22137330	Sanchez-Juan P	2011-11-30	Neurobiol Aging	Genome-wide study links MTMR7 gene to variant Creutzfeldt-Jakob risk.	Creutzfeldt-Jakob disease (variant)	93 European ancestry cases, 1,504 European ancestry controls	42 European ancestry cases	8p22	MTMR7	rs4921542-?	NR	2E-8		3.25	[2.22-4.78]	Affymetrix [287554]	N
716	chr8	17282410	17282411	rs13271465	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	8p22	ADAM24P	rs13271465-A	0.244	8E-6	(Total glutathione )	0.03	[NR] umol/L increase	Illumina [899892]	N
717	chr8	17329826	17329827	rs2720508	20585324	Dick DM	2010-06-27	Mol Psychiatry	Genome-wide association study of conduct disorder symptomatology.	Conduct disorder	872 European, African American and other ancestry substance dependence cases, 3,091 European, African American and other ancestry controls	NA	8p22	intergenic	rs2720508-C	0.907	7E-6		1.61	[1.31-1.97]	Illumina [948658]	N
717	chr8	17336669	17336670	rs3988345	28322283	Chibnik LB	2017-03-21	Mol Psychiatry	Susceptibility to neurofibrillary tangles: role of the PTPRD locus and limited pleiotropy with other neuropathologies.	Cerebral amyloid angiopathy	404 European ancestry mild cases, 209 European ancestry moderate cases, 113 European ancestry severe cases, 183 European ancestry controls	369 individuals	8p22		rs3988345-T	0.44	3E-6	(EA)			Affymetrix, Illumina [NR] (imputed)	N
717	chr8	17354224	17354225	rs2588199	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-hip ratio	1,254 whole genome sequenced European ancestry individuals, 3,071 whole genome sequenced individuals, 29,723 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,053 Mylopotamos (founder/genetic isolate) individuals, 879 Pomak (founder/genetic isolate) individuals	206,053 European ancestry individuals	8p22	SLC7A2	rs2588199-C	0.9957	7E-6		0.8285	[0.47-1.19] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
717	chr8	17370775	17370776	rs1962772	24823311	Guan W	2014-05-13	Circ Cardiovasc Genet	Genome-wide association study of plasma N6 polyunsaturated fatty acids within the cohorts for heart and aging research in genomic epidemiology consortium.	Plasma omega-6 polyunsaturated fatty acid levels (adrenic acid)	8,631 European ancestry individuals	NA	8p22	SLC7A2	rs1962772-T	0.623	9E-7		0.01	[NR] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
717	chr8	17371286	17371287	rs17124738	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip	15 Asian ancestry cases, 13 European ancestry cases, 15 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	8p22	NR	rs17124738-?	NR	6E-6		3.79	[2.92-4.92]	Illumina [539000] (imputed)	N
717	chr8	17392356	17392357	rs2720499	26031901	Dahlin A	2015-06-02	Pharmacogenomics J	Genome-wide association study of leukotriene modifier response in asthma.	Response to zileuton treatment in asthma (FEV1 change interaction)	160 European and other ancestry zileuton-treated cases, 144 European and other ancestry placebo-controlled cases	149 European and other ancestry zileuton-treated cases, 73 European and other ancestry placebo-controlled cases	8p22	SLC7A2	rs2720499-?	NR	3E-7	(Recessive model)	2.42	unit decrease	Illumina [542562]	N
717	chr8	17419460	17419461	rs56335308	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glutamine levels	114,751 European ancestry individuals	NA	8p22		rs56335308-G	0.972632	1E-20		0.117482	[0.093-0.142] unit decrease	NR [11722792] (imputed)	N
717	chr8	17419460	17419461	rs56335308	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Alanine levels	115,078 European ancestry individuals	NA	8p22		rs56335308-G	0.972653	5E-15		0.0979521	[0.073-0.122] unit decrease	NR [11722792] (imputed)	N
717	chr8	17419460	17419461	rs56335308	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	8p22		rs56335308-A	0.0248	1E-10		0.29466903	[0.21-0.38] mmHg increase	Affymetrix, Illumina [242866] (imputed)	N
717	chr8	17419460	17419461	rs56335308	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for twenty other PFAAs)	1,338 Japanese ancestry individuals	NA	8p22	SLC7A2	rs56335308-G	0.93	5E-14	(Orn)	0.35	[0.25-0.45] unit decrease	Illumina [1288202] (imputed)	N
717	chr8	17419460	17419461	rs56335308	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for twenty other PFAAs)	1,338 Japanese ancestry individuals	NA	8p22	SLC7A2	rs56335308-G	0.93	3E-16	(Arg)	0.43	[0.33-0.53] unit decrease	Illumina [1288202] (imputed)	N
717	chr8	17421187	17421188	rs140440674	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glutamine levels	114,751 European ancestry individuals	NA	8p22		rs140440674-C	0.996296	4E-11		0.22476	[0.16-0.29] unit increase	NR [11722792] (imputed)	N
717	chr8	17422716	17422717	rs7838611	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for one other PFAA)	1,338 Japanese ancestry individuals	NA	8p22	SLC7A2	rs7838611-?		4E-9	(Arg (adjusted for Asn))			Illumina [1288202] (imputed)	N
717	chr8	17422716	17422717	rs7838611	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for one other PFAA)	1,338 Japanese ancestry individuals	NA	8p22	SLC7A2	rs7838611-?		4E-7	(Arg (adjusted for Gly))			Illumina [1288202] (imputed)	N
717	chr8	17422716	17422717	rs7838611	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for one other PFAA)	1,338 Japanese ancestry individuals	NA	8p22	SLC7A2	rs7838611-?		3E-8	(Arg (adjusted for Gln))			Illumina [1288202] (imputed)	N
717	chr8	17422716	17422717	rs7838611	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for one other PFAA)	1,338 Japanese ancestry individuals	NA	8p22	SLC7A2	rs7838611-?		3E-6	(Orn (adjusted for Gln))			Illumina [1288202] (imputed)	N
717	chr8	17422716	17422717	rs7838611	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for one other PFAA)	1,338 Japanese ancestry individuals	NA	8p22	SLC7A2	rs7838611-?		2E-7	(Arg (adjusted for Pro))			Illumina [1288202] (imputed)	N
717	chr8	17422716	17422717	rs7838611	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for one other PFAA)	1,338 Japanese ancestry individuals	NA	8p22	SLC7A2	rs7838611-?		1E-7	(Arg (adjusted for Ser))			Illumina [1288202] (imputed)	N
717	chr8	17422716	17422717	rs7838611	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for one other PFAA)	1,338 Japanese ancestry individuals	NA	8p22	SLC7A2	rs7838611-?		1E-7	(Arg (adjusted for Phe))			Illumina [1288202] (imputed)	N
717	chr8	17422716	17422717	rs7838611	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for one other PFAA)	1,338 Japanese ancestry individuals	NA	8p22	SLC7A2	rs7838611-?		1E-6	(Orn (adjusted for Asn))			Illumina [1288202] (imputed)	N
717	chr8	17422716	17422717	rs7838611	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels	1,338 Japanese ancestry individuals	NA	8p22	SLC7A2	rs7838611-?	NR	1E-7	(Arg)			Illumina [1288202] (imputed)	N
717	chr8	17424747	17424748	rs11991148	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	8p22		rs11991148-T	NR	2E-8		0.0283	[0.018-0.038] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
717	chr8	17427185	17427186	rs75902664	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	NA	8p22	SLC7A2	rs75902664-A	0.9739	5E-10		0.3546	[0.24-0.47] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
717	chr8	17431677	17431678	rs7008481	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for twenty other PFAAs)	1,338 Japanese ancestry individuals	NA	8p22	PDGFRL	rs7008481-G		2E-8	(Orn)	0.18	[0.12-0.24] unit decrease	Illumina [1288202] (imputed)	N
718	chr8	17438438	17438439	rs9792282	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for twenty other PFAAs)	1,338 Japanese ancestry individuals	NA	8p22	PDGFRL	rs9792282-G		3E-8	(Arg)	0.18	[0.12-0.24] unit decrease	Illumina [1288202] (imputed)	N
718	chr8	17442333	17442334	rs61696445	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Spatial memory	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	8p22	PDGFRL	rs61696445-A	NR	8E-7		0.24579883	[0.15-0.35] unit decrease	Illumina [> 6200000] (imputed)	N
718	chr8	17445954	17445955	rs192322963	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycine levels	114,978 European ancestry individuals	NA	8p22		rs192322963-G	0.974557	5E-11		0.0823007	[0.058-0.107] unit decrease	NR [11722792] (imputed)	N
718	chr8	17450460	17450461	rs192581039	31560688	Geidenstam N	2019-09-27	PLoS One	Using metabolite profiling to construct and validate a metabolite risk score for predicting future weight gain.	Sphingomyelin 24:0 levels	1,937 individuals	NA	8p22	PDGFRL	rs192581039-A	0.031	6E-7		0.4629	[0.28-0.64] unit increase	Affymetrix, Illumina [up to 22000000] (imputed)	N
718	chr8	17450771	17450772	rs2588147	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8p22	SLC7A2	rs2588147-?	NR	1E-6	(SM 24:0)	0.41407806	[0.25-0.58] unit increase	Affymetrix [at least 2500000] (imputed)	N
718	chr8	17461420	17461421	rs13256095	24529757	Xie T	2014-01-17	Neurobiol Aging	Genome-wide association study combining pathway analysis for typical sporadic amyotrophic lateral sclerosis in Chinese Han populations.	Amyotrophic lateral sclerosis (sporadic)	250 Han Chinese ancestry cases, 250 Han Chinese ancestry controls	NA	8p22	PDGFRL	rs13256095-?		6E-6				Illumina [859311]	N
718	chr8	17462221	17462222	rs7829987	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Chagas cardiomyopathy in Tripanosoma cruzi seropositivity	207 Brazilian ancestry cases, 306 Brazilian ancestry controls	NA	8p22	NR	rs7829987-?	NR	4E-6				Affymetrix [5486770] (imputed)	N
718	chr8	17462467	17462468	rs2588129	30134803	Matana A	2018-04-11	Mol Med	Genome-wide meta-analysis identifies novel loci associated with parathyroid hormone level.	Plasma parathyroid hormone levels	806 Korculan (founder/genetic isolate) individuals, 831 Vis (founder/genetic isolate) individuals, 959 Croatian ancestry individuals	NA	8p22	PDGFRL	rs2588129-A	0.02	5E-6	(female)	0.54	[0.3-0.78] unit increase	Illumina [7411206] (imputed)	N
718	chr8	17496560	17496561	rs4921790	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Hippocampal volume in normal cognition	305 European ancestry cognitively normal individuals	NA	8p22	PDGFRL, SLC7A2, MTUS1, MIR548V	rs4921790-C	0.12	5E-9		0.61	[0.41-0.81] unit increase	Illumina [7770817] (imputed)	N
718	chr8	17498729	17498730	rs11995662	29884306	Workalemahu T	2018-04-16	Placenta	Genetic variations and risk of placental abruption: A genome-wide association study and meta-analysis of genome-wide association studies.	Placental abruption	959 cases, 1553 controls	NA	8p22	PDGFRL	rs11995662-?		5E-6		1.6393442	[1.33-2.04]	Illumina [up to 4983952] (imputed)	N
718	chr8	17500222	17500223	rs4705	26528553	Davenport ER	2015-11-03	PLoS One	Genome-Wide Association Studies of the Human Gut Microbiota.	Gut microbiome composition (summer)	91 Hutterite individuals	NA	8p22	NR	rs4705-?	NR	4E-6	(order_Selenomonadales)	0.6819864	[0.41-0.96] unit decrease	Affymetrix [210924]	N
718	chr8	17507963	17507964	rs4921799	26732429	Wang Z	2016-01-04	Hum Mol Genet	Meta-analysis of genome-wide association studies identifies multiple lung cancer susceptibility loci in never-smoking Asian women.	Lung cancer	6,877 East Asian ancestry never smoker cases, 6,277 East Asian ancestry never smoker controls	5,878 East Asian ancestry never smoker cases, 7,046 East Asian ancestry never smoker controls	8p22	Intergenic	rs4921799-?	0.171	3E-6		1.1235955	[1.06-1.18]	Affymetrix, Illumina [7564751] (imputed)	N
718	chr8	17507963	17507964	rs4921799	26732429	Wang Z	2016-01-04	Hum Mol Genet	Meta-analysis of genome-wide association studies identifies multiple lung cancer susceptibility loci in never-smoking Asian women.	Adenocarcinoma	Up to 5,744 Chinese ancestry cases, up to 4,817 Chinese ancestry controls, up to 1,133 Japanese ancestry cases, up to 1,460 Japanese ancestry controls	Up to 4,647 Chinese ancestry cases, up to 4,099 Chinese ancestry controls, up to 1,231 Japanese ancestry cases, up to 2,947 Japanese ancestry controls	8p22	Intergenic	rs4921799-?	0.171	3E-6		1.1235955		Affymetrix, Illumina [7564751] (imputed)	N
718	chr8	17549492	17549493	rs182363	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	8p22		rs182363-?	NR	2E-10				NR [~ 8900000] (imputed)	N
718	chr8	17550622	17550623	rs4921804	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	8p22	MTUS1	rs4921804-G	0.63	4E-9		0.39	[0.25-0.53] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
718	chr8	17550622	17550623	rs4921804	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	8p22	MTUS1	rs4921804-G	0.6226	2E-9		0.4138	[0.28-0.55] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
719	chr8	17614052	17614053	rs13248545	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Yeast infection	52,218 European ancestry cases, 10,235 European ancestry controls	NA	8p22	NR	rs13248545-?	NR	9E-6		0.0391	[0.022-0.056] unit increase	Illumina [at least 560000] (imputed)	N
719	chr8	17683066	17683067	rs188637550	26503814	Hardin M	2016-10-27	Pharmacogenomics J	A genome-wide analysis of the response to inhaled ?2-agonists in chronic obstructive pulmonary disease.	Response to bronchodilator in chronic obstructive pulmonary disease (change in FEV1)	5,766 European ancestry cases, 811 African American cases	NA	8p22	MTUS	rs188637550-T	0.98	5E-7	(BDRPRED, AA)	6.89	[4.31-9.65] unit increase	Illumina [NR] (imputed)	N
719	chr8	17688424	17688425	rs428308	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	8p22		rs428308-?	NR	3E-11				NR [~ 8900000] (imputed)	N
720	chr8	17737356	17737357	rs7815429	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	8p22	FGL1	rs7815429-T	0.31296875	3E-70	(FGL1, 5581_28_3)	0.4458265	[0.4-0.49] unit decrease	Illumina [> 1000000] (imputed)	N
720	chr8	17737392	17737393	rs2467071	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FGL1	5,368 Icelandic ancestry individuals	NA	8p22		rs2467071-T	0.02847	5E-71		0.99811	[0.89-1.11] unit decrease	Illumina [7506463] (imputed)	N
720	chr8	17749898	17749899	rs17116498	26503814	Hardin M	2016-10-27	Pharmacogenomics J	A genome-wide analysis of the response to inhaled ?2-agonists in chronic obstructive pulmonary disease.	Response to bronchodilator in chronic obstructive pulmonary disease (change in FEV1)	5,766 European ancestry cases, 811 African American cases	NA	8p22	FGL1	rs17116498-C	0.99	7E-7	(BDRPRED, AA)	7.07	[4.29-9.85] unit increase	Illumina [NR] (imputed)	N
720	chr8	17750588	17750589	rs10095395	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	8p22		rs10095395-?	NR	6E-21				NR [~ 8900000] (imputed)	N
720	chr8	17753305	17753306	rs17634704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FGL1	5,368 Icelandic ancestry individuals	NA	8p22		rs17634704-A	0.3133	7E-128		0.462115	[0.42-0.5] unit decrease	Illumina [7506463] (imputed)	N
720	chr8	17781256	17781257	rs12718385	27018472	Leslie EJ	2016-04-07	Am J Hum Genet	A Genome-wide Association Study of Nonsyndromic Cleft Palate Identifies an Etiologic Missense Variant in GRHL3.	Cleft palate	38 European ancestry cases, 835 European ancestry controls, 21 Hispanic cases, 626 Hispanic controls, 2 Asian ancestry cases, 161 Asian ancestry controls, 38 Indian ancestry controls, 15 Sub-Saharan African ancestry cases, 2 African American cases, 68 Sub-Saharan African ancestry controls, 5 African American controls, 1 African control, 4 controls	246 European ancestry cases, 1,685 European ancestry controls	8p22	NR	rs12718385-T	NR	9E-6	(EA)	2.271	[1.581-3.261]	Illumina [34985077] (imputed)	N
720	chr8	17781256	17781257	rs12718385	27018472	Leslie EJ	2016-04-07	Am J Hum Genet	A Genome-wide Association Study of Nonsyndromic Cleft Palate Identifies an Etiologic Missense Variant in GRHL3.	Cleft palate	38 European ancestry cases, 835 European ancestry controls, 21 Hispanic cases, 626 Hispanic controls, 2 Asian ancestry cases, 161 Asian ancestry controls, 38 Indian ancestry controls, 15 Sub-Saharan African ancestry cases, 2 African American cases, 68 Sub-Saharan African ancestry controls, 5 African American controls, 1 African control, 4 controls	246 European ancestry cases, 1,685 European ancestry controls	8p22	NR	rs12718385-T	NR	9E-6		2.271	[1.58-3.26]	Illumina [34985077] (imputed)	N
720	chr8	17783924	17783925	rs3850743	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		PCM1	rs3850743-?	NR	8E-9	(female)	0.246308	[NR] unit increase	Affymetrix [NR] (imputed)	N
720	chr8	17784413	17784414	rs11779988	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	8p22	NR	rs11779988-C	0.6061	2E-6	(EA)	0.0302	[0.018-0.043] unit decrease	Illumina [~ 11800000] (imputed)	N
720	chr8	17787610	17787611	rs527298592	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	8p22	PCM1	rs527298592-C	0.631686	4E-9		0.013843466	[0.0092-0.0184] unit decrease	Affymetrix [93095623] (imputed)	N
720	chr8	17796884	17796884	rs139743358	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atrial fibrillation/atrial flutter	29,212 European ancestry cases, 400,539 European ancestry controls, 4,150 East Asian ancestry cases, 155,540 East Asian ancestry controls	NA	8p22		rs139743358-ATAACAATATTATG	NR	1E-8		0.0716	[0.047-0.096] unit increase	Affymetrix, Illumina [25830072] (imputed)	N
720	chr8	17800768	17800769	rs2299587	22566634	Benjamin DJ	2012-05-07	Proc Natl Acad Sci U S A	The genetic architecture of economic and political preferences.	Economic and political preferences	9,617 European ancestry individuals	NA	8p22	PCM1	rs2299587-T	NR	9E-7	(Trust)	0.125	[0.074-0.176] unit decrease	Illumina [628922]	N
720	chr8	17815952	17815953	rs78336844	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	8p22	PCM1	rs78336844-A	0.929	2E-6		0.0599	[0.035-0.084] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
720	chr8	17823284	17823285	rs208054	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	8p22	PCM1	rs208054-C	0.626369	3E-9		0.013752386	[0.0092-0.0183] unit decrease	Affymetrix [93095623] (imputed)	N
721	chr8	17857444	17857445	rs6586676	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	8p22		rs6586676-T	0.38	7E-10		6.16	z score increase	Affymetrix [9061022] (imputed)	N
721	chr8	17858296	17858297	rs34975555	25461247	Lehmann DS	2015-02-01	Pharmacogenet Genomics	Genome-wide association study of virologic response with efavirenz-containing or abacavir-containing regimens in AIDS clinical trials group protocols.	Response to efavirenz-containing treatment in HIV 1 infection (virologic failure)	Up to 737 European ancestry individuals, Up to 545 Black individuals, Up to 314 Hispanic individuals	NA	8p22	NR	rs34975555-C	NR	5E-6	(phenotype 3)	2.08	[NR]	Illumina [> 8000000] (imputed)	N
721	chr8	17866532	17866533	rs10888148	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	8p22	Intergenic	rs10888148-T	0.374	1E-8	(MTAG)	0.0078	[0.0051-0.0105] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
721	chr8	17871597	17871598	rs13266287	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	8p22		rs13266287-A	0.6687	2E-8		0.0085	[0.0056-0.0114] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
721	chr8	17880242	17880243	rs2283113	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	8p22		rs2283113-A	NR	2E-9		0.0081	[0.0056-0.0106] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
721	chr8	17884605	17884606	rs383091	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	8p22	PCM1	rs383091-T	0.372191	5E-10		0.0127202	[0.0087-0.0167] unit decrease	Affymetrix [NR] (imputed)	N
721	chr8	17886441	17886442	rs188524320	26503814	Hardin M	2016-10-27	Pharmacogenomics J	A genome-wide analysis of the response to inhaled ?2-agonists in chronic obstructive pulmonary disease.	Response to bronchodilator in chronic obstructive pulmonary disease (change in FEV1)	5,766 European ancestry cases, 811 African American cases	NA	8p22	PCM1	rs188524320-C	0.99	6E-7	(BDRPRED, AA)	7.01	[4.27-9.75] unit increase	Illumina [NR] (imputed)	N
721	chr8	17904321	17904322	rs414260	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	8p22		rs414260-G	NR	2E-9		0.0123	[0.0084-0.0162] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
721	chr8	17913969	17913970	rs7508	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	8p22	ASAH1	rs7508-A	0.711	2E-21		1.07	[1.06-1.09]	Illumina [34740186] (imputed)	N
721	chr8	17913969	17913970	rs7508	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	8p22	ASAH1	rs7508-A	0.73	4E-18	(EA)	1.08	[1.06-1.1]	Affymetrix, Illumina [up to 12149979] (imputed)	N
721	chr8	17913969	17913970	rs7508	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	8p22	ASAH1	rs7508-A	0.71	2E-19		1.07	[1.06-1.09]	Affymetrix, Illumina [up to 12149979] (imputed)	N
721	chr8	17913969	17913970	rs7508	28416818	Christophersen IE	2017-04-17	Nat Genet	Large-scale analyses of common and rare variants identify 12 new loci associated with atrial fibrillation.	Atrial fibrillation	15,979 European ancestry cases, 102,776 European ancestry controls.	NA	8p22	ASAH1, PCM1	rs7508-A	0.73	6E-10		1.1	[1.06-1.13]	Affymetrix, Illumina [11795432] (imputed)	N
721	chr8	17927608	17927609	rs34642578	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	8p22	ASAH1	rs34642578-T	0.053	2E-9		1.09	[1.06-1.13]	Affymetrix, Illumina [11800000] (imputed)	N
721	chr8	17946434	17946435	rs60962775	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		AC124242.1	rs60962775-?	NR	4E-9	(female)	1.04226	[NR] unit decrease	Affymetrix [NR] (imputed)	N
722	chr8	17964686	17964687	rs149722314	33602968	Skuladottir AT	2021-02-18	Sci Rep	A meta-analysis uncovers the first sequence variant conferring risk of Bell's palsy.	Bell's palsy	4,714 European ancestry cases, 1,011,520 European ancestry controls	NA	8p22	intergenic	rs149722314-A	0.008	7E-6		1.62889	NR	Affymetrix, Illumina [30341632] (imputed)	N
722	chr8	17977649	17977650	rs17126232	21552555	Wang K	2011-04-28	PLoS One	A genome-wide association study on obesity and obesity-related traits.	Obesity	520 European ancestry cases, 540 European ancestry controls	1,196 European ancestry individuals	8p22	ASAH1	rs17126232-?	NR	8E-8	(weight)			Illumina [~ 550000]	N
722	chr8	17977649	17977650	rs17126232	21552555	Wang K	2011-04-28	PLoS One	A genome-wide association study on obesity and obesity-related traits.	Obesity	520 European ancestry cases, 540 European ancestry controls	1,196 European ancestry individuals	8p22	ASAH1	rs17126232-?	NR	4E-7	(BMI)			Illumina [~ 550000]	N
722	chr8	17977649	17977650	rs17126232	21552555	Wang K	2011-04-28	PLoS One	A genome-wide association study on obesity and obesity-related traits.	Obesity	520 European ancestry cases, 540 European ancestry controls	1,196 European ancestry individuals	8p22	ASAH1	rs17126232-?	NR	2E-7	(HIP)			Illumina [~ 550000]	N
722	chr8	17982916	17982917	rs55940216	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 14, intercanthal width)	2,187 European ancestry individuals	NA	8p22	NR	rs55940216-G	0.1511	2E-6		0.2002	[0.12-0.28] unit increase	Illumina [10677593] (imputed)	N
722	chr8	17987011	17987012	rs2898455	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8p22	NAT1	rs2898455-?	NR	3E-6	(indole-3-propionate)	0.23675822	[0.14-0.34] unit increase	Affymetrix [at least 2500000] (imputed)	N
722	chr8	17990695	17990696	rs2106045	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	8p22	intergenic	rs2106045-?	NR	4E-6		0.101	[0.05-0.152] unit decrease	Illumina [at least 13000000] (imputed)	N
722	chr8	18029276	18029277	rs2157651	30621171	Coltell O	2019-01-04	Nutrients	Genome-Wide Association Study (GWAS) on Bilirubin Concentrations in Subjects with Metabolic Syndrome: Sex-Specific GWAS Analysis and Gene-Diet Interactions in a Mediterranean Population.	Serum bilirubin levels x Mediterranean diet adherence interaction in metabolic syndrome	257 European ancestry individuals with low adherence to Mediterranean diet, 161 European ancestry individuals with high adherence to Mediterranean diet	NA	8p22	NAT1	rs2157651-T	0.248	2E-6	(women)			Illumina [622468]	N
722	chr8	18064260	18064261	rs28741075	34330890	Ip HF	2021-07-30	Transl Psychiatry	Genetic association study of childhood aggression across raters, instruments, and age.	Childhood aggressive behavior	87,485 European ancestry individuals	NA	8p22		rs28741075-G	0.0164459	7E-6		0.09582441	[0.054-0.138] unit increase	Affymetrix, Illumina [up to 7284995] (imputed)	N
722	chr8	18067394	18067395	rs7845127	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	8p22	NAT1, ASAH1, AACP, NAT2	rs7845127-C	NR	3E-6	(sleep latency)	0.2572	[0.15-0.37] unit decrease	Affymetrix [7141204] (imputed)	N
722	chr8	18070926	18070927	rs11203943	30958311	Tao F	2019-04-03	J Neuromuscul Dis	Modifier Gene Candidates in Charcot-Marie-Tooth Disease Type 1A: A Case-Only Genome-Wide Association Study.	Decreased fine motor function in Charcot-Marie-Tooth disease 1A (buttons, zippers, fasteners, bottles)	277 European ancestry severe cases, 146 European ancestry mild cases	NA	8p22	NR	rs11203943-?		2E-6				Illumina [600000]	N
722	chr8	18072808	18072809	rs17693097	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		NAT1	rs17693097-?	NR	4E-8	(female)	1.02807	[NR] unit decrease	Affymetrix [NR] (imputed)	N
723	chr8	18158003	18158004	rs1123939	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	8p22	NR	rs1123939-T	0.3	8E-6		0.93	[0.89-0.97]	Illumina [8468885] (imputed)	N
723	chr8	18214063	18214064	rs186707910	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	8p22	NAT2	rs186707910-C	0.0209036602161203	5E-6	(G_unclassified_P_Firmicutes_HB)	1.06196	[0.61-1.52] unit decrease	Illumina [7711310] (imputed)	N
724	chr8	18233581	18233582	rs7006687	23459443	Avery CL	2013-03-05	Pharmacogenomics J	Drug-gene interactions and the search for missing heritability: a cross-sectional pharmacogenomics study of the QT interval.	QT interval (drug interaction)	33,781 European ancestry individuals	NA	8p22	AACP	rs7006687-T	0.57	2E-6	(Sulfonylurea Hypoglycemic agents)			Affymetrix, Illumina [~ 2500000] (imputed)	N
724	chr8	18246052	18246053	rs11780884	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small HDL	115,082 European ancestry individuals	NA	8p22		rs11780884-A	0.168487	2E-8		0.0302613	[0.02-0.041] unit increase	NR [11722792] (imputed)	N
724	chr8	18255409	18255410	rs1115784	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	8p22	NAT2	rs1115784-G	0.301148	8E-7		1.04	[1.03-1.06]	NR [8126035] (imputed)	N
724	chr8	18255409	18255410	rs1115784	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x long total sleep time interaction (2df test)	at least 2,926 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, at least 7,664 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,906 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 31,986 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 317 East Asian ancestry long sleepers, up to 5,171 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 928 African American controls, 1,301 East Asian ancestry controls, up to 20,961 European ancestry controls, 10,064 Hispanic controls	8p22	NAT2	rs1115784-?	NR	5E-13		0.01489	[0.011-0.019] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
724	chr8	18255708	18255709	rs1961456	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Total cholesterol levels	32,576 East Asian ancestry individuals, 187,365 European ancestry individuals	10,855 Chinese ancestry individuals	8p22	NAT2	rs1961456-A	0.708	7E-17	(Trans-ethnic initial)	0.0305	[0.023-0.038] unit decrease (EA Beta values)	Affymetrix, Illumina [up to 1900000] (imputed)	N
724	chr8	18256654	18256655	rs11782802	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	8p22	NR	rs11782802-T	NR	2E-14		0.0363	[0.027-0.046] unit increase	Affymetrix [9000000] (imputed)	N
724	chr8	18258315	18258316	rs1208	25798622	Knowles JW	2015-03-23	J Clin Invest	Identification and validation of N-acetyltransferase 2 as an insulin sensitivity gene.	Insulin resistance/response	2,764 European ancestry individuals	1,601 Hispanic ancestry individuals, 1,259 European ancestry individuals	8p22	NAT2	rs1208-A	0.57	3E-6				Affymetrix, Illumina [12106458] (imputed)	N
724	chr8	18259365	18259366	rs721399	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	8p22	NR	rs721399-T	0.716974	9E-13		0.015304	[0.011-0.019] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
724	chr8	18259365	18259366	rs721399	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	8p22	NAT2	rs721399-T	0.72	4E-58	(4-acetamidobutanoate)	0.029	[0.025-0.033] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
724	chr8	18259875	18259876	rs11780610	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8p22	NR	rs11780610-T	0.618733	2E-14				Affymetrix, Illumina [20825802] (imputed)	N
724	chr8	18259875	18259876	rs11780610	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	8p22	NAT2	rs11780610-C	0.284515	9E-10		0.0133218	[0.0091-0.0176] unit increase	Affymetrix [NR] (imputed)	N
724	chr8	18259875	18259876	rs11780610	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	8p22	intergenic	rs11780610-T	0.7089	2E-35		0.0362	[0.031-0.042] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
724	chr8	18260354	18260355	rs4646248	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	8p22		rs4646248-C	0.284967	3E-9		0.0262452	[0.018-0.035] unit increase	NR [11722792] (imputed)	N
724	chr8	18260354	18260355	rs4646248	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	8p22		rs4646248-C	0.284967	2E-9		0.0263729	[0.018-0.035] unit increase	NR [11722792] (imputed)	N
724	chr8	18260354	18260355	rs4646248	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	8p22	NAT2	rs4646248-C	0.285156	5E-11		0.00165898	[0.0012-0.0022] unit decrease	Affymetrix [13995440] (imputed)	N
724	chr8	18260354	18260355	rs4646248	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	8p22	NR	rs4646248-T	NR	2E-10		0.0174	[0.012-0.023] unit increase	Affymetrix [9000000] (imputed)	N
724	chr8	18260354	18260355	rs4646248	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	8p22	NAT2, PSD3	rs4646248-?	NR	5E-8		0.0299494	[0.019-0.041] unit decrease	Illumina [4804024] (imputed)	N
724	chr8	18260354	18260355	rs4646248	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	8p22	NAT2	rs4646248-T	0.699	2E-7		0.032	[0.02-0.044] unit decrease	Affymetrix [7947838] (imputed)	N
724	chr8	18261492	18261493	rs1390360	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	8p22		rs1390360-A	NR	7E-13		0.0168	[0.012-0.021] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
724	chr8	18262722	18262723	rs1495745	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	8p22		rs1495745-T	0.274351	9E-9		0.0248802	[0.016-0.033] unit decrease	NR [11722792] (imputed)	N
724	chr8	18262722	18262723	rs1495745	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	8p22	NR	rs1495745-T	0.274652	9E-12		0.014178	[0.01-0.018] unit increase	NR [NR]	N
724	chr8	18262860	18262861	rs1495747	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	8p22		rs1495747-C	NR	3E-8		0.0139	[0.009-0.0188] unit increase	Affymetrix, Illumina [20528270] (imputed)	N
724	chr8	18266218	18266219	rs13277394	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	8p22	NR	rs13277394-T	NR	9E-10		0.0349	[0.024-0.046] unit increase	Affymetrix [9000000] (imputed)	N
724	chr8	18266218	18266219	rs13277394	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	8p22	NR	rs13277394-T	NR	9E-11		0.0368	[0.026-0.048] unit increase	Affymetrix [9000000] (imputed)	N
724	chr8	18272376	18272377	rs4921913	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large VLDL	115,082 European ancestry individuals	NA	8p22		rs4921913-C	0.220872	7E-14		0.0355099	[0.026-0.045] unit increase	NR [11722792] (imputed)	N
724	chr8	18272376	18272377	rs4921913	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium VLDL	115,082 European ancestry individuals	NA	8p22		rs4921913-C	0.220872	3E-12		0.0335828	[0.024-0.043] unit increase	NR [11722792] (imputed)	N
724	chr8	18272376	18272377	rs4921913	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large VLDL	115,082 European ancestry individuals	NA	8p22		rs4921913-C	0.220872	3E-11		0.031762	[0.022-0.041] unit increase	NR [11722792] (imputed)	N
724	chr8	18272376	18272377	rs4921913	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	8p22		rs4921913-C	0.220872	1E-12		0.0341222	[0.025-0.044] unit increase	NR [11722792] (imputed)	N
724	chr8	18272376	18272377	rs4921913	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in VLDL	115,082 European ancestry individuals	NA	8p22		rs4921913-C	0.220872	1E-14		0.0367176	[0.027-0.046] unit increase	NR [11722792] (imputed)	N
724	chr8	18272376	18272377	rs4921913	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large VLDL	115,082 European ancestry individuals	NA	8p22		rs4921913-C	0.220872	1E-13		0.0353842	[0.026-0.045] unit increase	NR [11722792] (imputed)	N
724	chr8	18272376	18272377	rs4921913	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small VLDL	115,082 European ancestry individuals	NA	8p22		rs4921913-C	0.220872	2E-9		0.0293498	[0.02-0.039] unit increase	NR [11722792] (imputed)	N
724	chr8	18272376	18272377	rs4921913	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large VLDL	115,082 European ancestry individuals	NA	8p22		rs4921913-C	0.220872	9E-12		0.0327493	[0.023-0.042] unit increase	NR [11722792] (imputed)	N
724	chr8	18272376	18272377	rs4921913	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in VLDL	115,082 European ancestry individuals	NA	8p22		rs4921913-C	0.220872	5E-12		0.0336343	[0.024-0.043] unit increase	NR [11722792] (imputed)	N
724	chr8	18272376	18272377	rs4921913	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large VLDL	115,082 European ancestry individuals	NA	8p22		rs4921913-C	0.220872	3E-13		0.0349683	[0.026-0.044] unit increase	NR [11722792] (imputed)	N
724	chr8	18272376	18272377	rs4921913	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large VLDL	115,082 European ancestry individuals	NA	8p22		rs4921913-C	0.220872	7E-13		0.0343794	[0.025-0.044] unit increase	NR [11722792] (imputed)	N
724	chr8	18272376	18272377	rs4921913	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in VLDL	115,082 European ancestry individuals	NA	8p22		rs4921913-C	0.220872	2E-10		0.0311676	[0.022-0.041] unit increase	NR [11722792] (imputed)	N
724	chr8	18272376	18272377	rs4921913	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-6 fatty acid levels	115,006 European ancestry individuals	NA	8p22		rs4921913-C	0.220853	2E-8		0.0271975	[0.018-0.037] unit increase	NR [11722792] (imputed)	N
724	chr8	18272376	18272377	rs4921913	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	8p22		rs4921913-C	0.220872	6E-12		0.0330036	[0.024-0.042] unit increase	NR [11722792] (imputed)	N
724	chr8	18272376	18272377	rs4921913	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in VLDL	115,082 European ancestry individuals	NA	8p22		rs4921913-C	0.220872	2E-8		0.0276521	[0.018-0.037] unit increase	NR [11722792] (imputed)	N
724	chr8	18272376	18272377	rs4921913	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large VLDL particles	115,082 European ancestry individuals	NA	8p22		rs4921913-C	0.220872	5E-14		0.0358963	[0.027-0.045] unit increase	NR [11722792] (imputed)	N
724	chr8	18272376	18272377	rs4921913	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small VLDL particles	115,082 European ancestry individuals	NA	8p22		rs4921913-C	0.220872	2E-9		0.0293907	[0.02-0.039] unit increase	NR [11722792] (imputed)	N
724	chr8	18272376	18272377	rs4921913	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large VLDL particles	115,082 European ancestry individuals	NA	8p22		rs4921913-C	0.220872	2E-12		0.0337604	[0.024-0.043] unit increase	NR [11722792] (imputed)	N
724	chr8	18272376	18272377	rs4921913	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large VLDL	115,082 European ancestry individuals	NA	8p22		rs4921913-C	0.220872	6E-9		0.0284864	[0.019-0.038] unit increase	NR [11722792] (imputed)	N
724	chr8	18272376	18272377	rs4921913	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large VLDL	115,082 European ancestry individuals	NA	8p22		rs4921913-C	0.220872	2E-8		0.0277187	[0.018-0.037] unit increase	NR [11722792] (imputed)	N
724	chr8	18272376	18272377	rs4921913	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	8p22		rs4921913-C	0.220872	4E-11		0.0319886	[0.022-0.041] unit increase	NR [11722792] (imputed)	N
724	chr8	18272376	18272377	rs4921913	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	8p22		rs4921913-C	0.220872	2E-10		0.0308945	[0.021-0.04] unit increase	NR [11722792] (imputed)	N
724	chr8	18272376	18272377	rs4921913	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for VLDL particles	115,082 European ancestry individuals	NA	8p22		rs4921913-C	0.220872	3E-12		0.0323814	[0.023-0.041] unit increase	NR [11722792] (imputed)	N
724	chr8	18272376	18272377	rs4921913	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	8p22	NAT2	rs4921913-C	0.220467	5E-19		0.0053017	[0.0041-0.0065] unit increase	Affymetrix [13995440] (imputed)	N
724	chr8	18272376	18272377	rs4921913	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	8p22	NAT2, PSD3	rs4921913-C	0.320555	6E-44	(4-acetamidobutanoate)	0.281	[0.24-0.32] unit increase	Illumina [13039987] (imputed)	N
724	chr8	18272376	18272377	rs4921913	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	8p22	CSGALNACT1	rs4921913-?	NR	9E-35		0.0385	[0.033-0.044] unit increase	Affymetrix [5701386] (imputed)	N
724	chr8	18272376	18272377	rs4921913	31589552	Lind L	2019-10-07	Metab Syndr Relat Disord	Genome-Wide Association Study of the Metabolic Syndrome in UK Biobank.	Metabolic syndrome	291,107 European ancestry individuals	NA	8p22	NAT2	rs4921913-C	0.221605	5E-8		0.0426441	[0.027-0.058] unit increase	Affymetrix [9463307] (imputed)	N
724	chr8	18272376	18272377	rs4921913	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite ratios	Up to 5,591 European ancestry individuals	Up to 1,767 European ancestry individuals	8p22	NAT2	rs4921913-T	0.78	3E-47	(4-acetamidobutanoate/N1-methyladenosine)	0.036	[0.03-0.042] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
724	chr8	18272437	18272438	rs4921914	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Total cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	8p22	NAT2, PSD3	rs4921914-?		7E-12		0.0261	[0.019-0.034] unit increase	Illumina [31500000] (imputed)	N
724	chr8	18272437	18272438	rs4921914	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8p22	NR	rs4921914-T	0.682087	9E-12				Affymetrix, Illumina [21126107] (imputed)	N
724	chr8	18272437	18272438	rs4921914	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	8p22	NAT2	rs4921914-C	0.22	5E-18	(X - 12410)	0.377	[0.29-0.46] unit increase	Illumina [7750367] (imputed)	N
724	chr8	18272437	18272438	rs4921914	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	8p22	NAT2	rs4921914-C	0.22	1E-11	(1-methylurate)	0.405	[0.29-0.52] unit decrease	Illumina [7750367] (imputed)	N
724	chr8	18272437	18272438	rs4921914	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	Triglyceride levels	up to 23,508 African ancestry individuals, 4,649 Asian ancestry individuals, up to 77,047 European ancestry individuals, 6,705 Hispanic individuals	NA	8p22		rs4921914-T	0.7118	7E-8		0.0135	[0.0086-0.0184] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
724	chr8	18272437	18272438	rs4921914	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Triglyceride levels	28,183 East Asian ancestry individuals, 177,861 European ancestry individuals	10,857 Chinese ancestry individuals	8p22	NAT2	rs4921914-T	0.752	2E-20	(Trans-ethnic initial)	0.0353	[0.027-0.043] unit decrease (EA Beta values)	Affymetrix, Illumina [up to 1900000] (imputed)	N
724	chr8	18272437	18272438	rs4921914	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	8p22	NAT2	rs4921914-T	0.78	1E-60	(1-methylxanthine)	0.088	[0.078-0.098] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
724	chr8	18272437	18272438	rs4921914	24586186	Rueedi R	2014-02-20	PLoS Genet	Genome-wide association study of metabolic traits reveals novel gene-metabolite-disease links.	Urinary metabolites (H-NMR features)	835 European ancestry individuals	601 Brazilian individuals	8p22	NAT2	rs4921914-T	0.23	4E-32	(2.1875, Unknown)	0.51	[NR] unit increase	Illumina [713870] (imputed)	N
724	chr8	18272437	18272438	rs4921914	21572414	Suhre K	2011-05-15	Nat Genet	A genome-wide association study of metabolic traits in human urine.	Urinary metabolites	862 European ancestry male individuals	1,862 European ancestry individuals	8p22	NAT2	rs4921914-C	0.23	1E-28	(Formate/succinate ratio)			Affymetrix [645249]	N
724	chr8	18272465	18272466	rs4921915	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small VLDL	115,082 European ancestry individuals	NA	8p22		rs4921915-G	0.220832	4E-16		0.0389913	[0.03-0.048] unit increase	NR [11722792] (imputed)	N
724	chr8	18272465	18272466	rs4921915	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small HDL	115,082 European ancestry individuals	NA	8p22		rs4921915-G	0.220832	9E-22		0.0459651	[0.037-0.055] unit increase	NR [11722792] (imputed)	N
724	chr8	18272465	18272466	rs4921915	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total triglycerides levels	115,082 European ancestry individuals	NA	8p22		rs4921915-G	0.220832	2E-16		0.0394287	[0.03-0.049] unit increase	NR [11722792] (imputed)	N
724	chr8	18272465	18272466	rs4921915	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small HDL	115,082 European ancestry individuals	NA	8p22		rs4921915-G	0.220832	1E-11		0.0336531	[0.024-0.043] unit increase	NR [11722792] (imputed)	N
724	chr8	18272465	18272466	rs4921915	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	8p22		rs4921915-G	0.220812	4E-11		0.0304776	[0.021-0.04] unit increase	NR [11722792] (imputed)	N
724	chr8	18272465	18272466	rs4921915	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Polyunsaturated fatty acid levels	115,006 European ancestry individuals	NA	8p22		rs4921915-G	0.220812	2E-8		0.0273559	[0.018-0.037] unit increase	NR [11722792] (imputed)	N
724	chr8	18272465	18272466	rs4921915	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	8p22		rs4921915-G	0.220832	5E-17		0.0398998	[0.031-0.049] unit increase	NR [11722792] (imputed)	N
724	chr8	18272465	18272466	rs4921915	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	8p22		rs4921915-G	0.220832	6E-13		0.0345658	[0.025-0.044] unit increase	NR [11722792] (imputed)	N
724	chr8	18272465	18272466	rs4921915	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	8p22		rs4921915-G	0.220924	1E-10		0.0305131	[0.021-0.04] unit decrease	NR [11722792] (imputed)	N
724	chr8	18272465	18272466	rs4921915	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	8p22		rs4921915-G	0.220924	6E-10		0.0294574	[0.02-0.039] unit decrease	NR [11722792] (imputed)	N
724	chr8	18272465	18272466	rs4921915	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	111,667 East Asian ancestry individuals	NA	8p22		rs4921915-A	0.314429	2E-10		0.0273704	[0.019-0.036] unit decrease	Illumina [13471903] (imputed)	N
724	chr8	18272465	18272466	rs4921915	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	8p22		rs4921915-A	NR	3E-22		0.0219	[0.017-0.026] unit decrease	Affymetrix, Illumina [20536134] (imputed)	N
724	chr8	18272465	18272466	rs4921915	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	8p22	NAT2	rs4921915-G	0.22	1E-19	(4-acetamidobutanoate)	0.163	[0.13-0.2] unit increase	Illumina [7750367] (imputed)	N
724	chr8	18272465	18272466	rs4921915	25352340	Benyamin B	2014-10-29	Nat Commun	Novel loci affecting iron homeostasis and their effects in individuals at risk for hemochromatosis.	Iron status biomarkers (transferrin levels)	23,986 European ancestry individuals	Up to 24,986 European ancestry individuals	8p22	NAT2	rs4921915-A	0.782	7E-19		0.079	[0.061-0.097] unit increase	Affymetrix, Illumina [~ 2100000] (imputed)	N
724	chr8	18272503	18272503	rs146812806	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	8p22	NAT2, PSD3	rs146812806-C	0.321531	9E-32	(5-acetylamino-6-amino-3-methyluracil)	0.273	[0.23-0.32] unit increase	Illumina [13039987] (imputed)	N
724	chr8	18272503	18272503	rs146812806	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	8p22	NR	rs146812806-I	0.779385	9E-14		0.018769	[0.014-0.024] SD unit decrease	Affymetrix, Illumina [50282193] (imputed)	N
724	chr8	18272534	18272535	rs35246381	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	8p22		rs35246381-C	0.221227	2E-11		0.031408	[0.022-0.041] unit increase	NR [11722792] (imputed)	N
724	chr8	18272534	18272535	rs35246381	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	8p22		rs35246381-C	0.221227	2E-11		0.0321405	[0.023-0.042] unit increase	NR [11722792] (imputed)	N
724	chr8	18272534	18272535	rs35246381	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	8p22		rs35246381-C	0.221227	1E-10		0.0301961	[0.021-0.039] unit increase	NR [11722792] (imputed)	N
724	chr8	18272534	18272535	rs35246381	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	8p22		rs35246381-C	0.221227	2E-13		0.0349071	[0.026-0.044] unit decrease	NR [11722792] (imputed)	N
724	chr8	18272534	18272535	rs35246381	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small HDL	115,082 European ancestry individuals	NA	8p22		rs35246381-C	0.221227	4E-14		0.0372404	[0.028-0.047] unit increase	NR [11722792] (imputed)	N
724	chr8	18272534	18272535	rs35246381	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphoglycerides levels	115,006 European ancestry individuals	NA	8p22		rs35246381-C	0.221208	1E-9		0.0284591	[0.019-0.038] unit increase	NR [11722792] (imputed)	N
724	chr8	18272534	18272535	rs35246381	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphatidylcholine levels	115,006 European ancestry individuals	NA	8p22		rs35246381-C	0.221208	2E-8		0.0262704	[0.017-0.035] unit increase	NR [11722792] (imputed)	N
724	chr8	18272534	18272535	rs35246381	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	8p22		rs35246381-C	0.221227	2E-14		0.0379454	[0.028-0.048] unit decrease	NR [11722792] (imputed)	N
724	chr8	18272534	18272535	rs35246381	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	8p22		rs35246381-C	0.221227	1E-13		0.0350063	[0.026-0.044] unit decrease	NR [11722792] (imputed)	N
724	chr8	18272534	18272535	rs35246381	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	8p22		rs35246381-C	0.221227	5E-9		0.0275903	[0.018-0.037] unit decrease	NR [11722792] (imputed)	N
724	chr8	18272534	18272535	rs35246381	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	8p22		rs35246381-C	0.221227	2E-17		0.0420846	[0.032-0.052] unit decrease	NR [11722792] (imputed)	N
724	chr8	18272534	18272535	rs35246381	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	8p22		rs35246381-C	0.221227	2E-13		0.0343478	[0.025-0.043] unit decrease	NR [11722792] (imputed)	N
724	chr8	18272534	18272535	rs35246381	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	8p22		rs35246381-C	0.221227	1E-9		0.0285445	[0.019-0.038] unit decrease	NR [11722792] (imputed)	N
724	chr8	18272534	18272535	rs35246381	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	8p22		rs35246381-C	0.221227	4E-10		0.0302638	[0.021-0.04] unit decrease	NR [11722792] (imputed)	N
724	chr8	18272534	18272535	rs35246381	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	8p22		rs35246381-C	0.221227	2E-12		0.0329493	[0.024-0.042] unit decrease	NR [11722792] (imputed)	N
724	chr8	18272534	18272535	rs35246381	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	8p22		rs35246381-C	0.221227	6E-20		0.042667	[0.034-0.052] unit decrease	NR [11722792] (imputed)	N
724	chr8	18272534	18272535	rs35246381	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	8p22	NAT2, PSD3	rs35246381-C	0.320748	7E-128	(5-acetylamino-6-formylamino-3-methyluracil)	0.547	[0.5-0.59] unit increase	Illumina [13039987] (imputed)	N
724	chr8	18272534	18272535	rs35246381	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	8p22		rs35246381-C	0.77876	1E-13		0.0195573	[0.014-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
724	chr8	18272534	18272535	rs35246381	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite modules (eigenmetabolites) in chronic kidney disease	1,221 cases	406 cases	8p22	NAT2	rs35246381-C	0.22	2E-25	(4-acetamidobutanoate, allo-threonine, N-acetylputrescine)	0.01	[0.008-0.012] unit increase	Illumina [7750367] (imputed)	N
724	chr8	18272534	18272535	rs35246381	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	8p22	NAT2	rs35246381-C	0.23	1E-72	(5-acetylamino-6-formylamino-3-methyluracil)	1.141	[1.02-1.26] unit increase	Illumina [7750367] (imputed)	N
724	chr8	18272534	18272535	rs35246381	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	8p22	NAT2	rs35246381-C	0.22	6E-24	(5-acetylamino-6-amino-3-methyluracil)	0.534	[0.43-0.64] unit increase	Illumina [7750367] (imputed)	N
724	chr8	18272534	18272535	rs35246381	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	8p22	NAT2	rs35246381-C	0.22	3E-35	(N-acetylputrescine)	0.229	[0.19-0.27] unit increase	Illumina [7750367] (imputed)	N
724	chr8	18272534	18272535	rs35246381	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x short total sleep time interaction (2df test)	2,990 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,300 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, at least 11,842 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,350 European ancestry controls, 4,047 Hispanic/Latino controls	at least 220 African American short sleepers, 326 East Asian ancestry short sleepers, up to 5,288 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 1,292 East Asian ancestry controls, up to 20,844 European ancestry controls, 10,062 Hispanic controls	8p22	NAT2	rs35246381-?	NR	3E-13		0.01394	[0.0097-0.0182] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
724	chr8	18272534	18272535	rs35246381	30670697	Kilpelainen TO	2019-01-22	Nat Commun	Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity.	Triglycerides x physical activity interaction (2df test)	7,294 African American inactive individuals, 12,832 African American active individuals, 1,352 Asian ancestry inactive individuals, 3,049 Asian ancestry active individuals, 20,622 European ancestry inactive individuals, 51,480 European ancestry active individuals, 2,166 Hispanic or Latin American inactive individuals, 3,486 Hispanic or Latin American active individuals	580 African American inactive individuals, 1,540 African American active individuals, 1,217 South African Black ancestry inactive individuals, 389 South African Black ancestry active individuals, 765 East Asian ancestry inactive individuals, 1,814 East Asian ancestry active individuals,  724 South Asian ancestry inactive individuals, 1,424 South Asian ancestry active individuals, 32,456 European ancestry inactive individuals, 49,510 European ancestry active individuals, 2,619 Hispanic inactive individuals, 8,803 Hispanic active individuals	8p22	NR	rs35246381-T	0.732	2E-18				Affymetrix, Illumina [at least 2500000] (imputed)	N
724	chr8	18272534	18272535	rs35246381	26352407	Raffler J	2015-09-09	PLoS Genet	Genome-Wide Association Study with Targeted and Non-targeted NMR Metabolomics Identifies 15 Novel Loci of Urinary Human Metabolic Individuality.	Urinary metabolites	3,861 European ancestry individuals	1,691European ancestry individuals	8p22	NAT2	rs35246381-C	0.23	3E-202	(2.159 ppm/3.324 ppm)	1.1291	[NR] unit increase	Affymetrix [620456]	N
724	chr8	18272634	18272635	rs35570672	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	8p22		rs35570672-C	NR	4E-8		0.0127	[0.0082-0.0172] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
724	chr8	18272634	18272635	rs35570672	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	8p22	NAT2, PSD3	rs35570672-T	0.320984	1E-100	(N-acetylputrescine)	0.497	[0.45-0.54] unit increase	Illumina [13039987] (imputed)	N
724	chr8	18272634	18272635	rs35570672	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	8p22	NAT2, PSD3	rs35570672-T	0.320428	4E-40	(1-methylxanthine)	0.311	[0.27-0.36] unit decrease	Illumina [13039987] (imputed)	N
724	chr8	18272634	18272635	rs35570672	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	8p22		rs35570672-C	0.779407	3E-10		0.01671392	[0.011-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
724	chr8	18272880	18272881	rs1495741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	8p22		rs1495741-G	0.220853	8E-19		0.0413283	[0.032-0.05] unit increase	NR [11722792] (imputed)	N
724	chr8	18272880	18272881	rs1495741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	8p22		rs1495741-G	0.220864	6E-17		0.040001	[0.031-0.049] unit increase	NR [11722792] (imputed)	N
724	chr8	18272880	18272881	rs1495741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	8p22		rs1495741-G	0.220864	1E-15		0.0377162	[0.029-0.047] unit increase	NR [11722792] (imputed)	N
724	chr8	18272880	18272881	rs1495741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	8p22		rs1495741-G	0.220864	3E-9		0.0288178	[0.019-0.038] unit increase	NR [11722792] (imputed)	N
724	chr8	18272880	18272881	rs1495741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	8p22		rs1495741-G	0.220864	1E-19		0.0430685	[0.034-0.052] unit increase	NR [11722792] (imputed)	N
724	chr8	18272880	18272881	rs1495741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	8p22		rs1495741-G	0.220864	1E-20		0.0434319	[0.034-0.053] unit increase	NR [11722792] (imputed)	N
724	chr8	18272880	18272881	rs1495741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very small VLDL	115,082 European ancestry individuals	NA	8p22		rs1495741-G	0.220864	3E-15		0.0380835	[0.029-0.048] unit increase	NR [11722792] (imputed)	N
724	chr8	18272880	18272881	rs1495741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large HDL	115,082 European ancestry individuals	NA	8p22		rs1495741-G	0.220864	6E-14		0.0364055	[0.027-0.046] unit increase	NR [11722792] (imputed)	N
724	chr8	18272880	18272881	rs1495741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small LDL	115,082 European ancestry individuals	NA	8p22		rs1495741-G	0.220864	7E-15		0.0375251	[0.028-0.047] unit increase	NR [11722792] (imputed)	N
724	chr8	18272880	18272881	rs1495741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium LDL	115,082 European ancestry individuals	NA	8p22		rs1495741-G	0.220864	2E-12		0.0341047	[0.025-0.044] unit increase	NR [11722792] (imputed)	N
724	chr8	18272880	18272881	rs1495741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium HDL	115,082 European ancestry individuals	NA	8p22		rs1495741-G	0.220864	9E-29		0.0542452	[0.045-0.064] unit increase	NR [11722792] (imputed)	N
724	chr8	18272880	18272881	rs1495741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large LDL	115,082 European ancestry individuals	NA	8p22		rs1495741-G	0.220864	6E-11		0.0318961	[0.022-0.041] unit increase	NR [11722792] (imputed)	N
724	chr8	18272880	18272881	rs1495741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large HDL	115,082 European ancestry individuals	NA	8p22		rs1495741-G	0.220864	4E-20		0.0433707	[0.034-0.053] unit increase	NR [11722792] (imputed)	N
724	chr8	18272880	18272881	rs1495741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in LDL	115,082 European ancestry individuals	NA	8p22		rs1495741-G	0.220864	4E-12		0.0337504	[0.024-0.043] unit increase	NR [11722792] (imputed)	N
724	chr8	18272880	18272881	rs1495741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in IDL	115,082 European ancestry individuals	NA	8p22		rs1495741-G	0.220864	2E-12		0.0343047	[0.025-0.044] unit increase	NR [11722792] (imputed)	N
724	chr8	18272880	18272881	rs1495741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in HDL	115,082 European ancestry individuals	NA	8p22		rs1495741-G	0.220864	2E-27		0.0526695	[0.043-0.062] unit increase	NR [11722792] (imputed)	N
724	chr8	18272880	18272881	rs1495741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	8p22		rs1495741-G	0.220864	3E-14		0.0364351	[0.027-0.046] unit increase	NR [11722792] (imputed)	N
724	chr8	18272880	18272881	rs1495741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total fatty acid levels	115,006 European ancestry individuals	NA	8p22		rs1495741-G	0.220845	9E-15		0.0380372	[0.028-0.048] unit increase	NR [11722792] (imputed)	N
724	chr8	18272880	18272881	rs1495741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Saturated fatty acid levels	115,006 European ancestry individuals	NA	8p22		rs1495741-G	0.220845	8E-14		0.0365695	[0.027-0.046] unit increase	NR [11722792] (imputed)	N
724	chr8	18272880	18272881	rs1495741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	8p22		rs1495741-G	0.220845	5E-12		0.0329449	[0.024-0.042] unit decrease	NR [11722792] (imputed)	N
724	chr8	18272880	18272881	rs1495741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to monounsaturated fatty acids	115,006 European ancestry individuals	NA	8p22		rs1495741-G	0.220845	2E-14		0.0365893	[0.027-0.046] unit decrease	NR [11722792] (imputed)	N
724	chr8	18272880	18272881	rs1495741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	8p22		rs1495741-G	0.220845	1E-12		0.0337663	[0.024-0.043] unit decrease	NR [11722792] (imputed)	N
724	chr8	18272880	18272881	rs1495741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of monounsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	8p22		rs1495741-G	0.220845	4E-15		0.0373348	[0.028-0.047] unit increase	NR [11722792] (imputed)	N
724	chr8	18272880	18272881	rs1495741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	8p22		rs1495741-G	0.220864	1E-16		0.0411885	[0.031-0.051] unit decrease	NR [11722792] (imputed)	N
724	chr8	18272880	18272881	rs1495741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	8p22		rs1495741-G	0.220864	7E-10		0.0295991	[0.02-0.039] unit increase	NR [11722792] (imputed)	N
724	chr8	18272880	18272881	rs1495741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	8p22		rs1495741-G	0.220864	1E-8		0.0267355	[0.017-0.036] unit increase	NR [11722792] (imputed)	N
724	chr8	18272880	18272881	rs1495741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	8p22		rs1495741-G	0.220868	3E-10		0.030476	[0.021-0.04] unit increase	NR [11722792] (imputed)	N
724	chr8	18272880	18272881	rs1495741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	8p22		rs1495741-G	0.220864	1E-10		0.0310318	[0.022-0.04] unit increase	NR [11722792] (imputed)	N
724	chr8	18272880	18272881	rs1495741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Monounsaturated fatty acid levels	115,006 European ancestry individuals	NA	8p22		rs1495741-G	0.220845	4E-18		0.0425032	[0.033-0.052] unit increase	NR [11722792] (imputed)	N
724	chr8	18272880	18272881	rs1495741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	8p22		rs1495741-G	0.220864	4E-20		0.0439631	[0.035-0.053] unit decrease	NR [11722792] (imputed)	N
724	chr8	18272880	18272881	rs1495741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	8p22		rs1495741-G	0.220864	2E-16		0.0390397	[0.03-0.048] unit decrease	NR [11722792] (imputed)	N
724	chr8	18272880	18272881	rs1495741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	8p22		rs1495741-G	0.220864	2E-13		0.0345796	[0.025-0.044] unit decrease	NR [11722792] (imputed)	N
724	chr8	18272880	18272881	rs1495741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	8p22		rs1495741-G	0.220864	6E-17		0.0399247	[0.031-0.049] unit increase	NR [11722792] (imputed)	N
724	chr8	18272880	18272881	rs1495741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of chylomicrons and extremely large VLDL particles	115,082 European ancestry individuals	NA	8p22		rs1495741-G	0.220864	2E-15		0.037963	[0.029-0.047] unit increase	NR [11722792] (imputed)	N
724	chr8	18272880	18272881	rs1495741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	8p22		rs1495741-G	0.220853	9E-11		0.0320665	[0.022-0.042] unit decrease	NR [11722792] (imputed)	N
724	chr8	18272880	18272881	rs1495741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	8p22		rs1495741-G	0.220864	1E-16		0.0412682	[0.032-0.051] unit increase	NR [11722792] (imputed)	N
724	chr8	18272880	18272881	rs1495741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	8p22		rs1495741-G	0.220864	3E-18		0.0423587	[0.033-0.052] unit decrease	NR [11722792] (imputed)	N
724	chr8	18272880	18272881	rs1495741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	8p22		rs1495741-G	0.220864	3E-18		0.0417553	[0.032-0.051] unit decrease	NR [11722792] (imputed)	N
724	chr8	18272880	18272881	rs1495741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	8p22		rs1495741-G	0.220864	5E-21		0.0445054	[0.035-0.054] unit decrease	NR [11722792] (imputed)	N
724	chr8	18272880	18272881	rs1495741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	8p22		rs1495741-G	0.220864	7E-16		0.0387244	[0.029-0.048] unit increase	NR [11722792] (imputed)	N
724	chr8	18272880	18272881	rs1495741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	8p22		rs1495741-G	0.220864	2E-21		0.0463236	[0.037-0.056] unit decrease	NR [11722792] (imputed)	N
724	chr8	18272880	18272881	rs1495741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	8p22		rs1495741-G	0.220864	8E-16		0.0379883	[0.029-0.047] unit decrease	NR [11722792] (imputed)	N
724	chr8	18272880	18272881	rs1495741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	8p22		rs1495741-G	0.220864	2E-16		0.0394954	[0.03-0.049] unit increase	NR [11722792] (imputed)	N
724	chr8	18272880	18272881	rs1495741	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls, 33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	8p22		rs1495741-A	NR	1E-19		0.0507	[0.04-0.062] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
724	chr8	18272880	18272881	rs1495741	32339537	Roberts V	2020-04-24	J Invest Dermatol	Genome wide association study identifies genetic associations with perceived age.	Youthful appearance (self-reported)	423,992 European ancestry individuals	NA	8p22	NAT2	rs1495741-G	0.220768	4E-8		1.0292332	NR	Affymetrix [~ 9600000] (imputed)	N
724	chr8	18272880	18272881	rs1495741	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	8p22	NAT2	rs1495741-G	0.220582	7E-56		0.0375888	[0.033-0.042] unit increase	Affymetrix [NR] (imputed)	N
724	chr8	18272880	18272881	rs1495741	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	8p22	NAT2	rs1495741-G	0.220557	5E-12		0.0173848	[0.012-0.022] unit increase	Affymetrix [NR] (imputed)	N
724	chr8	18272880	18272881	rs1495741	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	8p22	NAT2	rs1495741-G	0.220487	4E-10		0.0157165	[0.011-0.021] unit increase	Affymetrix [NR] (imputed)	N
724	chr8	18272880	18272881	rs1495741	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	8p22	CSGALNACT1	rs1495741-?	NR	3E-28		0.0339	[0.028-0.039] unit increase	Affymetrix [5701386] (imputed)	N
724	chr8	18272880	18272881	rs1495741	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	8p22	NAT2	rs1495741-G	0.22	6E-21	(1-methylxanthine)	0.589	[0.47-0.71] unit decrease	Illumina [7750367] (imputed)	N
724	chr8	18272880	18272881	rs1495741	31109976	Suvichapanich S	2019-05-20	Antimicrob Agents Chemother	Genome-Wide Association Study Confirming the Association of NAT2 with Susceptibility to Anti-tuberculosis Drug-Induced Liver Injury in Thai Patients.	Liver injury in anti-tuberculosis drug treatment	79 Thai ancestry cases, 239 Thai ancestry controls	NA	8p22	NAT2	rs1495741-A	0.59	7E-11	(recessive)	6.01	[3.42-10.57]	Illumina [545492]	N
724	chr8	18272880	18272881	rs1495741	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls	NA	8p22	NAT2	rs1495741-G	0.221421	1E-17		0.05763756	[0.044-0.071] unit increase	Affymetrix [7288503] (imputed)	N
724	chr8	18272880	18272881	rs1495741	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	Triglyceride levels	up to 23,508 African ancestry individuals, 4,649 Asian ancestry individuals, up to 77,047 European ancestry individuals, 6,705 Hispanic individuals	NA	8p22		rs1495741-A	0.7133	4E-8		0.0135	[0.0086-0.0184] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
724	chr8	18272880	18272881	rs1495741	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p22	NR	rs1495741-G	NR	6E-22		0.042	unit increase	Affymetrix [at least 7091467] (imputed)	N
724	chr8	18272880	18272881	rs1495741	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p22	NR	rs1495741-G	0.501	3E-6	(East Asian)	0.066	unit increase	Affymetrix [at least 7091467] (imputed)	N
724	chr8	18272880	18272881	rs1495741	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p22	NR	rs1495741-G	0.224	7E-16	(EA)	0.04	unit increase	Affymetrix [at least 7091467] (imputed)	N
724	chr8	18272880	18272881	rs1495741	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p22	NR	rs1495741-G	NR	4E-16		0.039	unit increase	Affymetrix [at least 7091467] (imputed)	N
724	chr8	18272880	18272881	rs1495741	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p22	NR	rs1495741-G	0.224	1E-13	(EA)	0.041	unit increase	Affymetrix [at least 7091467] (imputed)	N
724	chr8	18272880	18272881	rs1495741	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p22	NR	rs1495741-G	NR	6E-6		0.022	unit increase	Affymetrix [at least 7091467] (imputed)	N
724	chr8	18272880	18272881	rs1495741	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	8p22	NAT2	rs1495741-A	0.78	1E-27	(1-methylurate)	0.057	[0.047-0.067] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
724	chr8	18272880	18272881	rs1495741	24163127	Figueroa JD	2013-10-24	Hum Mol Genet	Genome-wide association study identifies multiple loci associated with bladder cancer risk.	Bladder cancer	up to 2,305 European ancestry cases, up to 3,901 European ancestry controls	up to 13,298 cases, up to 54,535 controls	8p22	NAT2	rs1495741-A	0.8	2E-10		1.14	[1.09-1.18]	Illumina [462190]	N
724	chr8	18272880	18272881	rs1495741	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Triglycerides	94,595 European ancestry individuals	93,982 European ancestry individuals	8p22	NAT2	rs1495741-G	0.26	3E-12		0.04	[NR] mg/dL increase	NR [NR] (imputed)	N
724	chr8	18272880	18272881	rs1495741	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	8p22	NAT2	rs1495741-G	0.26	3E-8		0.032	[NR] unit increase	NR [NR] (imputed)	N
724	chr8	18272880	18272881	rs1495741	20972438	Rothman N	2010-10-24	Nat Genet	A multi-stage genome-wide association study of bladder cancer identifies multiple susceptibility loci.	Bladder cancer	3,532 European ancestry cases, 5,120 European ancestry controls	8,381 cases, 48,275 controls	8p22	NAT2	rs1495741-?	0.80	4E-11		1.15	[1.10-1.20]	Illumina [589299]	N
724	chr8	18272880	18272881	rs1495741	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	Triglycerides	96,598 European ancestry individuals	NA	8p22	NAT2	rs1495741-G	0.22	4E-14		2.97	[2.15-3.79] mg/dL increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
724	chr8	18272880	18272881	rs1495741	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	Cholesterol, total	100,184 European ancestry individuals	NA	8p22	NAT2	rs1495741-G	0.32	2E-9		1.07	[0.66-1.48] mg/dL increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
724	chr8	18273299	18273300	rs1495743	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	8p22		rs1495743-C	NR	7E-11		0.0184	[0.013-0.024] unit decrease	Affymetrix, Illumina [20521447] (imputed)	N
724	chr8	18273299	18273300	rs1495743	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	8p22		rs1495743-C	NR	7E-12		0.0182	[0.013-0.023] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
724	chr8	18273299	18273300	rs1495743	33536631	Bell S	2021-02-03	Commun Biol	A genome-wide meta-analysis yields 46 new loci associating with biomarkers of iron homeostasis.	Iron status biomarkers (total iron binding capacity)	135,430 European ancestry individuals	NA	8p22	NAT2	rs1495743-G	0.214	9E-14		0.043	[0.055-0.032] SD decrease	Affymetrix, Illumina [40000000] (imputed)	N
724	chr8	18273299	18273300	rs1495743	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Triglyceride levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	8p22	NAT2, PSD3	rs1495743-?		4E-14		0.0309	[0.023-0.039] unit increase	Illumina [31500000] (imputed)	N
724	chr8	18273299	18273300	rs1495743	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	8p22	NAT2, PSD3	rs1495743-C	NR	3E-16	(EA)			Affymetrix, Illumina [NR] (imputed)	N
724	chr8	18273299	18273300	rs1495743	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	8p22	NAT2, PSD3	rs1495743-C	NR	2E-28				Affymetrix, Illumina [NR] (imputed)	N
724	chr8	18273299	18273300	rs1495743	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	8p22	NAT2, PSD3	rs1495743-C	NR	2E-11	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
724	chr8	18273299	18273300	rs1495743	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	8p22	NAT2, PSD3	rs1495743-C	NR	8E-12	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
724	chr8	18273299	18273300	rs1495743	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	8p22	NAT2, PSD3	rs1495743-C	NR	3E-29				Affymetrix, Illumina [NR] (imputed)	N
724	chr8	18273299	18273300	rs1495743	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	8p22	NAT2, PSD3	rs1495743-C	NR	1E-16	(EA)			Affymetrix, Illumina [NR] (imputed)	N
724	chr8	18273299	18273300	rs1495743	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	8p22	NAT2, PSD3	rs1495743-C	NR	4E-9	(EA)	0.018	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
724	chr8	18273299	18273300	rs1495743	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	8p22	NAT2, PSD3	rs1495743-C	NR	1E-19		0.017	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
724	chr8	18273299	18273300	rs1495743	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	8p22	NAT2, PSD3	rs1495743-C	NR	1E-10	(Asian)	0.018	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
724	chr8	18273299	18273300	rs1495743	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	8p22	NAT2, PSD3	rs1495743-C	NR	7E-15		0.017	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
724	chr8	18273299	18273300	rs1495743	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	8p22	NAT2, PSD3	rs1495743-C	NR	5E-9	(Asian)	0.018	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
724	chr8	18273299	18273300	rs1495743	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	8p22	NAT2, PSD3	rs1495743-C	NR	2E-7	(EA)	0.021	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
724	chr8	18273299	18273300	rs1495743	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	8p22	NAT2, PSD3	rs1495743-C	NR	8E-7	(EA)			Affymetrix, Illumina [NR] (imputed)	N
724	chr8	18273299	18273300	rs1495743	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	8p22	NAT2, PSD3	rs1495743-C	NR	3E-7				Affymetrix, Illumina [NR] (imputed)	N
724	chr8	18273299	18273300	rs1495743	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	8p22	NAT2, PSD3	rs1495743-C	NR	9E-8	(EA)			Affymetrix, Illumina [NR] (imputed)	N
724	chr8	18273299	18273300	rs1495743	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	8p22	NAT2, PSD3	rs1495743-C	NR	3E-8				Affymetrix, Illumina [NR] (imputed)	N
724	chr8	18273299	18273300	rs1495743	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p22	NR	rs1495743-G	NR	3E-22		0.042	unit increase	Affymetrix [at least 7091467] (imputed)	N
724	chr8	18273299	18273300	rs1495743	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p22	NR	rs1495743-G	0.499	1E-6	(East Asian)	0.069	unit increase	Affymetrix [at least 7091467] (imputed)	N
724	chr8	18273299	18273300	rs1495743	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p22	NR	rs1495743-G	0.22	5E-16	(EA)	0.04	unit increase	Affymetrix [at least 7091467] (imputed)	N
724	chr8	18273299	18273300	rs1495743	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p22	NR	rs1495743-G	NR	8E-17		0.04	unit increase	Affymetrix [at least 7091467] (imputed)	N
724	chr8	18273299	18273300	rs1495743	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p22	NR	rs1495743-G	0.22	3E-14	(EA)	0.042	unit increase	Affymetrix [at least 7091467] (imputed)	N
724	chr8	18273299	18273300	rs1495743	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p22	NR	rs1495743-G	NR	3E-6		0.023	unit increase	Affymetrix [at least 7091467] (imputed)	N
724	chr8	18273299	18273300	rs1495743	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Triglyceride levels	105,597 Japanese ancestry individuals	NA	8p22	NAT2, PSD3	rs1495743-?	NR	1E-8		0.02609	[0.017-0.035] unit decrease novel	Illumina [6108953] (imputed)	N
724	chr8	18273299	18273300	rs1495743	23093944	Krumsiek J	2012-10-18	PLoS Genet	Mining the unknown: a systems approach to metabolite identification combining genetic and metabolic information.	Serum metabolite levels	1,678 European ancestry individuals	NA	8p22	intergenic	rs1495743-?	NR	6E-16	(1methylxanthine)	0.09426	[NR] unit decrease	Affymetrix [655658]	N
724	chr8	18273299	18273300	rs1495743	21886157	Suhre K	2011-08-31	Nature	Human metabolic individuality in biomedical and pharmaceutical research.	Metabolic traits	2,820 European ancestry individuals	NA	8p22	NAT2	rs1495743-G	0.188	2E-40	(SM-7 + 11 other traits)	0.256	[NR] unit decrease	Affymetrix, Illumina [534665]	N
724	chr8	18274442	18274443	rs34987019	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	8p22	intergenic	rs34987019-T	0.754	2E-8		0.033	[0.021-0.045] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
724	chr8	18282930	18282931	rs73207888	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls	NA	8p22	NAT2	rs73207888-T	0.0339351	3E-8		0.1231201	[0.08-0.167] unit increase	Affymetrix [7288503] (imputed)	N
724	chr8	18286996	18286997	rs6997340	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	8p22	intergenic	rs6997340-T	0.3025	5E-9		0.0331	[0.022-0.044] unit increase	Affymetrix [at least 7947838] (imputed)	N
724	chr8	18286996	18286997	rs6997340	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	8p22	intergenic	rs6997340-T	0.305	5E-9		0.036	[0.024-0.048] unit increase	NR [8041861] (imputed)	N
724	chr8	18308809	18308810	rs10109552	27797806	Muller SH	2016-10-20	Brain	Genome-wide association study in essential tremor identifies three new loci.	Essential tremor	1,778 European ancestry cases, 5,376 European ancestry controls	1,029 European ancestry cases, 1,065 European ancestry controls	8p22	NR	rs10109552-G	0.7407	2E-8		1.2345679		Affymetrix [at least 416462] (imputed)	N
724	chr8	18313716	18313717	rs66477371	33594131	Donati G	2021-02-16	Sci Rep	Evidence for specificity of polygenic contributions to attainment in English, maths and science during adolescence.	Academic attainment (maths)	6,017 European ancestry adolescents	NA	8p22	NR	rs66477371-T	NR	6E-6		0.17	[0.097-0.243] unit decrease	Illumina [6319684] (imputed)	N
725	chr8	18380608	18380609	rs13274191	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x long total sleep time interaction (2df test)	at least 2,926 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, at least 7,664 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,906 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 31,986 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 317 East Asian ancestry long sleepers, up to 5,171 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 928 African American controls, 1,301 East Asian ancestry controls, up to 20,961 European ancestry controls, 10,064 Hispanic controls	8p22	NAT2	rs13274191-?	NR	6E-9		0.007472	[0.0033-0.0117] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
725	chr8	18381234	18381235	rs10090117	23776197	Leandro-Garcia LJ	2013-06-17	J Med Genet	Genome-wide association study identifies ephrin type A receptors implicated in paclitaxel induced peripheral sensory neuropathy.	Paclitaxel-induced neuropathy	143 European ancestry individuals		8p22	NAT2, PSD3	rs10090117-G	0.21	4E-6		2.38	[1.64-3.44]	Illumina [518577]	N
725	chr8	18403753	18403754	rs114629793	31591132	Wu W	2019-10-07	Genetics	Retrospective Association Analysis of Longitudinal Binary Traits Identifies Important Loci and Pathways in Cocaine Use.	Longitudinal cocaine use	1,682 mostly never users, 296 moderate decrease users, 86 elevated chronic users, 167 mostly frequent users	NA	8p22	PSD3	rs114629793-?	NR	7E-7	(AA)			Illumina [10215072] (imputed)	N
725	chr8	18403753	18403754	rs114629793	31591132	Wu W	2019-10-07	Genetics	Retrospective Association Analysis of Longitudinal Binary Traits Identifies Important Loci and Pathways in Cocaine Use.	Longitudinal cocaine use	1,682 mostly never users, 296 moderate decrease users, 86 elevated chronic users, 167 mostly frequent users	NA	8p22	PSD3	rs114629793-?	NR	2E-7				Illumina [10215072] (imputed)	N
725	chr8	18406381	18406382	rs78839949	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8p22	NR	rs78839949-G	0.01045	9E-14	(HAO1)	1.328	NR unit increase	Illumina [1671387] (imputed)	N
725	chr8	18407857	18407858	rs876983	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Schizophrenia (MTAG)	940,613 European ancestry individuals	NA			rs876983-?	NR	3E-8				NR [2625067]	N
725	chr8	18407857	18407858	rs876983	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA		NR	rs876983-T	NR	9E-8		1.06	[NR]	Illumina [7158791] (imputed)	N
725	chr8	18422922	18422923	rs13259407	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	8p22	PSD3	rs13259407-C	NR	9E-6	(EA)	1.0500892	[1.03-1.07]	Illumina [6627481] (imputed)	N
725	chr8	18422922	18422923	rs13259407	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	8p22	PSD3	rs13259407-C	NR	1E-8		1.0548522	[1.04-1.07]	Illumina [6627481] (imputed)	N
725	chr8	18422922	18422923	rs13259407	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	8p22	intergenic	rs13259407-C	NR	2E-6		1.0449321	[1.03-1.06]	Affymetrix, Illumina [up to 5107227] (imputed)	N
725	chr8	18424730	18424731	rs969599	27244217	Fogh I	2016-05-31	JAMA Neurol	Association of a Locus in the CAMTA1 Gene With Survival in Patients With Sporadic Amyotrophic Lateral Sclerosis.	Survival in sporadic amyotrophic lateral sclerosis	4,256 European ancestry cases	NA	8p22	PSD3	rs969599-?		3E-7		0.3112	[NR] unit decrease	Illumina [7174392] (imputed)	N
725	chr8	18442048	18442049	rs141947670	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (90 or 130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	8p22	PSD3	rs141947670-?	NR	5E-6		0.321	[0.15-0.5] unit decrease	Illumina [at least 13000000] (imputed)	N
725	chr8	18442350	18442351	rs2634447	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	8p22	NR	rs2634447-?	NR	2E-8		1.0654505	[1.04-1.09]	Affymetrix, Illumina [12447948] (imputed)	N
725	chr8	18458445	18458446	rs2634458	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (negative Marder score)	1,390 European ancestry cases	NA	8p22		rs2634458-?	NR	7E-6	(MLM)	0.4892784	[0.28-0.7] unit decrease	Illumina [~ 9000000] (imputed)	N
725	chr8	18458445	18458446	rs2634458	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (PANSS score)	1,390 European ancestry individuals	NA	8p22		rs2634458-?	NR	6E-6	(MLM)	0.489852	[0.28-0.7] unit decrease	Illumina [~ 9000000] (imputed)	N
725	chr8	18466900	18466901	rs144169578	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		PSD3	rs144169578-?	NR	9E-11	(female)	0.425259	[NR] unit increase	Affymetrix [NR] (imputed)	N
725	chr8	18469145	18469146	rs77159425	33232274	Mohammadnejad A	2020-11-24	Aging (Albany NY)	Generalized correlation coefficient for genome-wide association analysis of cognitive ability in twins.	Cognitive function (generalized correlation coefficient)	278 Chinese ancestry dizygotic twins	NA	8p22	NR	rs77159425-?	NR	9E-7			[NR]	Illumina [5432814] (imputed)	N
726	chr8	18497615	18497616	rs722311	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Perceived intensity of fructose	1,757 European ancestry twins	NA	8p22	PSD3	rs722311-G	0.32	6E-6		0.17	[0.092-0.248] unit increase	Illumina [4381914] (imputed)	N
726	chr8	18573918	18573919	rs73199941	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental extreme longevity (95 years and older)	1,339 middle-aged British cases, 40,934 middle-aged British controls	NA	8p22	NR	rs73199941-?	NR	4E-6		0.01471	[0.0084-0.021] unit decrease	Affymetrix [9658292] (imputed)	N
726	chr8	18592340	18592340	rs199607148	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-12p70 levels	8,270 Finnish ancestry individuals	NA	8p22	NR	rs199607148-TA		8E-6		0.2136	[0.12-0.31] SD units decrease	NR [10700000] (imputed)	N
727	chr8	18612611	18612612	rs10110943	27005419	Borne Y	2016-03-22	Hum Mol Genet	Genome wide association study identifies two loci associated with cadmium in erythrocytes among never-smokers.	Erythrocyte cadmium concentration in never smokers	1,728 individuals	NA	8p22	PSD3	rs10110943-A	0.07147	8E-6		0.1433	unit increase	Illumina [658884]	N
727	chr8	18632325	18632326	rs76185967	30576415	Gilly A	2019-08-01	Bioinformatics	Very low-depth whole-genome sequencing in complex trait association studies.	Glucose homeostasis traits	1,225 Mylopotamos (founder/genetic isolate) individuals	NA	8p22	PSD3, RPL35P6	rs76185967-?	NR	9E-8	(Random glucose)	1.97	[1.26-2.68] unit decrease	Illumina [14948665] (imputed)	N
727	chr8	18642756	18642757	rs10100475	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8p22	NAT2	rs10100475-?	NR	4E-6	(suberic acid)	0.45262715	[0.26-0.65] unit decrease	Affymetrix [at least 2500000] (imputed)	N
727	chr8	18662624	18662625	rs73595761	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8p22	NR	rs73595761-G	0.01394	3E-8	(NNT)	0.3214	NR unit increase	Illumina [1671387] (imputed)	N
727	chr8	18673730	18673731	rs2638663	24023788	Ong BA	2013-09-02	PLoS One	Gene network analysis in a pediatric cohort identifies novel lung function genes.	Lung function (FEV1)	1,015 European ancestry individuals, 541 African American individuals	NA	8p22	NR	rs2638663-?		8E-7	(AA)			Illumina [up to 524000]	N
727	chr8	18707870	18707871	rs7833787	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	8p22	PSD3	rs7833787-A	0.474	5E-6	(BMD )	0.04	[NR] g/cm2 increase	Illumina [899892]	N
727	chr8	18710940	18710941	rs6991832	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	8p22	NR	rs6991832-C	0.555139	5E-12		0.013182	[0.0094-0.0169] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
727	chr8	18727948	18727949	rs3758141	28044437	McDonald MN	2017-01-02	J Cachexia Sarcopenia Muscle	Body mass index change in gastrointestinal cancer and chronic obstructive pulmonary disease is associated with Dedicator of Cytokinesis 1.	Body mass index (change over time) in gastrointestinal cancer	204 cases	NA	8p22	PSD3	rs3758141-?		7E-6		0.087	[0.050-0.124] unit increase	Affymetrix [418365]	N
728	chr8	18782046	18782047	rs4921617	21507922	Ramsuran V	2011-05-01	Clin Infect Dis	Duffy-null-associated low neutrophil counts influence HIV-1 susceptibility in high-risk South African black women.	Neutrophil count	115 African ancestry HIV-negative individuals	NA	8p22	PSD3	rs4921617-?	NR	4E-6				Illumina [874956]	N
728	chr8	18804685	18804686	rs150639459	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	8p22	PSD3	rs150639459-C	0.01	8E-7		0.4091	[0.25-0.57] unit increase	Illumina [~ 9000000] (imputed)	N
728	chr8	18804685	18804686	rs150639459	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	8p22	PSD3	rs150639459-C	0.01	5E-6	(EA)	0.415	[0.24-0.59] unit increase	Illumina [~ 9000000] (imputed)	N
728	chr8	18817359	18817360	rs79105320	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Tumor necrosis factor alpha levels	3,454 Finnish ancestry individuals	NA	8p22	NR	rs79105320-G		4E-6		0.5605	[0.33-0.79] SD units decrease	NR [10700000] (imputed)	N
728	chr8	18856362	18856363	rs1365600	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Sub-cortical grey matter volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	8p22	PSD3	rs1365600-?		7E-6				Illumina [4322238] (imputed)	N
728	chr8	18869714	18869715	rs149559978	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8p22	NR	rs149559978-T	0.01916	3E-8	(NPC2)	0.05633	NR unit increase	Illumina [1671387] (imputed)	N
729	chr8	18917240	18917241	rs774769579	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Trunk fat mass	3,399 whole genome sequenced individuals, 12,838 European ancestry individuals	10,667 European ancestry individuals	8p22	PSD3	rs774769579-T	0.9982	4E-7		0.9253	[0.57-1.28] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
729	chr8	18917240	18917241	rs774769579	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body fat mass	3,399 whole genome sequenced individuals, 11,802 European ancestry individuals	10,670 European ancestry individuals	8p22	PSD3	rs774769579-T	0.9983	3E-7		0.8745	[0.54-1.21] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
729	chr8	18922576	18922577	rs2410601	24595857	Sandholm N	2014-03-05	Diabetologia	Genome-wide association study of urinary albumin excretion rate in patients with type 1 diabetes.	Urinary albumin excretion rate in type 1 diabetes	1,925 European ancestry cases	3,750 European ancestry cases	8p22	SH2D4A, PSD3	rs2410601-G	0.47	4E-6		0.08	[0.04-0.11] unit increase	Illumina [2400000] (imputed)	N
729	chr8	18963437	18963438	rs149373281	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Sporomusales abundance in stool	5,959 Finnish ancestry individuals	NA	8p22		rs149373281-A	0.0145992	1E-8		0.082151	[0.054-0.111] unit decrease	Illumina [7980478] (imputed)	N
729	chr8	18980492	18980493	rs2659678	28472463	Mullin BH	2017-05-04	Hum Mol Genet	Genome-wide association study meta-analysis for quantitative ultrasound parameters of bone identifies five novel loci for broadband ultrasound attenuation.	Bone ultrasound measurement (velocity of sound)	1,268 whole genome sequenced European ancestry women, 8,880 European ancestry women, 6,479 European ancestry men	NA	8p22	PSD3, LOC100128993	rs2659678-T	0.47	4E-7	(female)	0.07	[0.05-0.09] unit increase	Illumina [11973598] (imputed)	N
730	chr8	19013567	19013568	rs4921997	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	8p22		rs4921997-T	NR	1E-11		0.015	[0.011-0.019] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
730	chr8	19020199	19020200	rs691243	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8p22	NR	rs691243-T	0.709395	2E-11				Affymetrix, Illumina [24588908] (imputed)	N
730	chr8	19020257	19020258	rs691024	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	8p22	NR	rs691024-T	0.69132	7E-13		0.014258	[0.01-0.018] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
730	chr8	19021813	19021814	rs690674	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	8p22	RP11-1080G15.1	rs690674-T	0.692082	8E-20		0.022295266	[0.018-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
730	chr8	19021813	19021814	rs690674	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8p22	NR	rs690674-C	0.306063	7E-30				Affymetrix, Illumina [17210439] (imputed)	N
730	chr8	19021813	19021814	rs690674	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	8p22	NR	rs690674-C	0.308367	2E-31		0.024291	[0.02-0.028] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
730	chr8	19024815	19024816	rs13257813	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	8p22	RP11-1080G15.1	rs13257813-A	0.6818	1E-11		0.0262295	[0.019-0.034] unit decrease	Affymetrix [~ 2500000] (imputed)	N
730	chr8	19046752	19046753	rs146724023	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		AC100849.1	rs146724023-?	NR	5E-8	(female)	0.454637	[NR] unit increase	Affymetrix [NR] (imputed)	N
730	chr8	19047770	19047771	rs333042	32238385	Nakayama A	2020-04-01	Ann Rheum Dis	Subtype-specific gout susceptibility loci and enrichment of selection pressure on ABCG2 and ALDH2 identified by subtype genome-wide meta-analyses of clinically defined gout patients.	Gout	3,053 Japanese ancestry male cases, 4,554 Japanese ancestry male controls	NA	8p22	LOC100128993	rs333042-T	0.072	7E-7		1.36	[1.20-1.53]	Illumina [7206774] (imputed)	N
730	chr8	19077829	19077830	rs2683295	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in overweight individuals	up to 10,058 European ancestry male individuals, up to 7,189 European ancestry female individuals	NA	8p21.3	PSD3, SH2D4A	rs2683295-C	0.25	1E-6	(men)	0.083	[0.05-0.116] kg/m2 increase	Affymetrix, Illumina [at least 188473] (imputed)	N
730	chr8	19079795	19079796	rs2090789	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	8p21.3	NR	rs2090789-?	NR	7E-6		4.49	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
730	chr8	19080150	19080151	rs12056334	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting insulin	8,101 African American individuals	NA	8p21.3	LOC100128993	rs12056334-A	0.1428	4E-8		0.0666	[0.04-0.093] unit increase	Affymetrix, Illumina [26320006] (imputed)	N
730	chr8	19083151	19083152	rs17128007	24556642	Zeng Z	2014-02-18	Caries Res	Genome-wide association study of primary dentition pit-and-fissure and smooth surface caries.	Smooth-surface caries	1006 European ancestry individuals	NA	8p21.3	SH2D4A	rs17128007-T	0.021	7E-6		4.7991	[NR] unit increase	Illumina [1216189] (imputed)	N
730	chr8	19084783	19084784	rs6986924	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,963 Sub-Saharan African ancestry females	NA	8p21.3		rs6986924-C	0.892291	4E-6		0.0188591	[0.011-0.027] unit decrease	Illumina [13900000] (imputed)	N
730	chr8	19102563	19102564	rs11787341	24478790	Lee JH	2014-01-17	Front Genet	Genome wide association and linkage analyses identified three loci-4q25, 17q23.2, and 10q11.21-associated with variation in leukocyte telomere length: the Long Life Family Study.	Telomere length	4,829 European ancestry individuals from 586 families with exceptional longevity	NA	8p21.3	LOC100128993	rs11787341-A	0.059	9E-7			[NR]	Illumina [9250000] (imputed)	N
730	chr8	19116392	19116393	rs17128054	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		AC100849.1	rs17128054-?	NR	6E-9	(male)	2.97417	[NR] unit increase	Affymetrix [NR] (imputed)	N
731	chr8	19150286	19150287	rs1814981	28927378	Qian DC	2017-09-19	BMC Genomics	Genome-wide imaging association study implicates functional activity and glial homeostasis of the caudate in smoking addiction.	Caudate activity during reward	106 individuals	NA	8p21.3	NR	rs1814981-C	0.291136	6E-7		0.7958612	[0.5-1.09] unit decrease	Illumina [at least 621854] (imputed)	N
731	chr8	19151138	19151139	rs9325854	30621171	Coltell O	2019-01-04	Nutrients	Genome-Wide Association Study (GWAS) on Bilirubin Concentrations in Subjects with Metabolic Syndrome: Sex-Specific GWAS Analysis and Gene-Diet Interactions in a Mediterranean Population.	Serum bilirubin levels x sex interaction in metabolic syndrome	188 European ancestry male individuals, 242 European ancestry female individuals	NA	8p21.3	intergenic	rs9325854-?	NR	4E-6				Illumina [622468]	N
731	chr8	19179443	19179444	rs74751827	32682390	Wang W	2020-07-18	BMC Genomics	Heritability and genome-wide association analyses of fasting plasma glucose in Chinese adult twins.	Fasting plasma glucose	382 Chinese ancestry twin pairs	NA	8p21.3	SH2D4A	rs74751827-?		7E-6				NR [7405822] (imputed)	N
731	chr8	19251678	19251679	rs2958557	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p21.3	NR	rs2958557-T	NR	3E-8		0.117	unit increase	Affymetrix [at least 7091467] (imputed)	N
731	chr8	19251678	19251679	rs2958557	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p21.3	NR	rs2958557-T	0.011	3E-8	(EA)	0.117	unit increase	Affymetrix [at least 7091467] (imputed)	N
732	chr8	19268194	19268195	rs138400467	26423011	Wain LV	2015-09-27	Lancet Respir Med	Novel insights into the genetics of smoking behaviour, lung function, and chronic obstructive pulmonary disease (UK BiLEVE): a genetic association study in UK Biobank.	Lung function in never smokers (low FEV1 vs average FEV1)	9,745 European ancestry individuals with low FEV1 measurements, 9,827 European ancestry individuals with average FEV1 measurements	NA	8p21.3	CSGALNACT1	rs138400467-T	0.015	4E-7		1.587	[1.327-1.897]	Affymetrix [28509962] (imputed)	N
732	chr8	19300209	19300210	rs187129427	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Rheumatic fever	1,115 European ancestry cases, 88,076 European ancestry controls	NA	8p21.3	NR	rs187129427-?	NR	2E-6		1.4772	[0.71-2.25] unit decrease	Illumina [at least 560000] (imputed)	N
732	chr8	19306617	19306618	rs7818345	28577822	Deters KD	2017-05-31	Brain Lang	Genome-wide association study of language performance in Alzheimer's disease.	Language performance in older adults (adjusted for episodic memory)	310 European ancestry Alzheimer's disease individuals, 511 European ancestry individuals with late mild cognitive impairment, 280 European ancestry individuals with early mild cognitive impairment, 94 European ancestry individuals with significant memory concern, 365 European ancestry individuals with normal cognition	NA	8p21.3	CSGALNACT1	rs7818345-?	NR	4E-6		0.162	[0.093-0.231] unit decrease	Illumina [5574300] (imputed)	N
732	chr8	19313618	19313619	rs76292820	33597122	Verbitsky M	2021-02-17	J Am Soc Nephrol	Copy Number Variant Analysis and Genome-wide Association Study Identify Loci with Large Effect for Vesicoureteral Reflux.	Vesicoureteral reflux	1,395 European ancestry cases, 5,366 European ancestry controls	NA	8p21.3	NR	rs76292820-T	0.1599	3E-8	(recessive, male)	4.710999	[2.71594511101909-8.17156136369311]	Affymetrix, Illumina [6131010] (imputed)	N
732	chr8	19327958	19327959	rs6984449	25201988	Rietveld CA	2014-09-08	Proc Natl Acad Sci U S A	Common genetic variants associated with cognitive performance identified using the proxy-phenotype method.	Educational attainment	106,736 European ancestry individuals	NA	8p21.3	intergenic	rs6984449-A	0.601	1E-6		0.022	[NR] unit increase	Affymetrix, Illumina [NR] (imputed)	N
732	chr8	19355335	19355336	rs4073791	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	8p21.3		rs4073791-?	NR	2E-16				NR [~ 8900000] (imputed)	N
732	chr8	19363305	19363306	rs117494579	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	8p21.3		rs117494579-A	NR	7E-17		0.0606	[0.046-0.075] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
732	chr8	19363305	19363306	rs117494579	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	8p21.3		rs117494579-A	0.019519	7E-17		0.0606391	[0.046-0.075] unit decrease	Illumina [13479295] (imputed)	N
732	chr8	19363305	19363306	rs117494579	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	8p21.3	CSGALNACT1	rs117494579-?	NR	4E-16		0.08411582	[0.064-0.104] unit decrease	Illumina [27896057] (imputed)	N
732	chr8	19370597	19370598	rs9644630	27749845	Lesseur C	2016-10-17	Nat Genet	Genome-wide association analyses identify new susceptibility loci for oral cavity and pharyngeal cancer.	Oropharynx cancer	2,506 European ancestry cases, 135 cases, 5,984 European ancestry controls, 601 controls	NA	8p21.3	CSGALNACT1	rs9644630-C	0.403417288993538	3E-6		1.1837121		Illumina [7574753] (imputed)	N
732	chr8	19371766	19371767	rs7816777	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	8p21.3		rs7816777-T	0.3526	2E-9		0.0088	[0.0059-0.0117] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
732	chr8	19373264	19373265	rs4554481	32439431	Simard M	2020-05-19	J Allergy Clin Immunol	Polygenic risk score for atopic dermatitis in the Canadian population.	Atopic dermatitis (moderate to severe)	222 South East Asian ancestry, East Asian ancestry, South Asian ancestry, African American or Afro-Caribbean, European ancestry, Greater Middle Eastern (Middle Eastern, North African or Persian) cases, 2,466 Greater Middle Eastern (Middle Eastern, North African or Persian), Hispanic or Latin American, NR moderate to severe atopic dermatitis cases, 2,466 South East Asian ancestry, East Asian ancestry, South Asian ancestry, African American or Afro-Caribbean, European ancestry, Greater Middle Eastern (Middle Eastern, North African or Persian) cases, 2,466 Greater Middle Eastern (Middle Eastern, North African or Persian), Hispanic or Latin American, NR controls without moderate to severe atopic dermatitis	NA	8p21.3		rs4554481-C	NR	3E-11	(general)			Illumina [5894709] (imputed)	N
732	chr8	19379420	19379421	rs10107533	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	8p21.3	Intergenic	rs10107533-A	0.1784	2E-8	(MTAG)	0.0121	[0.0078-0.0164] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
732	chr8	19379420	19379421	rs10107533	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	8p21.3	Intergenic	rs10107533-A	0.1836	2E-9	(MTAG)	0.0101	[0.0068-0.0134] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
733	chr8	19432197	19432198	rs17128665	33597122	Verbitsky M	2021-02-17	J Am Soc Nephrol	Copy Number Variant Analysis and Genome-wide Association Study Identify Loci with Large Effect for Vesicoureteral Reflux.	Vesicoureteral reflux	1,395 European ancestry cases, 5,366 European ancestry controls	NA	8p21.3	NR	rs17128665-A	0.1766	7E-7	(recessive, male)	3.680321	[2.20052506984735-6.15524152917667]	Affymetrix, Illumina [6131010] (imputed)	N
733	chr8	19464767	19464768	rs11774660	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Rheumatic fever	1,115 European ancestry cases, 88,076 European ancestry controls	NA	8p21.3	NR	rs11774660-?	NR	8E-6		1.7533	[0.72-2.79] unit decrease	Illumina [at least 560000] (imputed)	N
733	chr8	19484444	19484445	rs73214651	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	8p21.3	NR	rs73214651-?	NR	5E-7		3883.3745	NR unit decrease	Illumina [2379855]	N
733	chr8	19493785	19493786	rs2975424	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	8p21.3	NR	rs2975424-C	NR	4E-10		0.019	[0.013-0.025] unit increase	Affymetrix [9000000] (imputed)	N
733	chr8	19493785	19493786	rs2975424	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	8p21.3	NR	rs2975424-C	NR	4E-12		0.022	[0.016-0.028] unit decrease	Affymetrix [9000000] (imputed)	N
733	chr8	19520530	19520531	rs59689479	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	8p21.3	NR	rs59689479-G	NR	9E-10		0.0532	[0.036-0.07] unit decrease	Affymetrix [9000000] (imputed)	N
733	chr8	19520530	19520531	rs59689479	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	8p21.3	NR	rs59689479-G	NR	1E-9		0.055	[0.037-0.073] unit increase	Affymetrix [9000000] (imputed)	N
733	chr8	19520530	19520531	rs59689479	29160301	Fabbri C	2017-11-21	Pharmacogenomics J	New insights into the pharmacogenomics of antidepressant response from the GENDEP and STAR*D studies: rare variant analysis and high-density imputation.	Response to antidepressants (symptom improvement)	2,145 European ancestry individuals	NA	8p21.3	CSGALNACT1	rs59689479-?	NR	4E-6		0.1674	NR unit decrease	Affymetrix, Illumina [7062950] (imputed)	N
733	chr8	19527535	19527536	rs4244455	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	8p21.3	NR	rs4244455-T	NR	3E-16		0.0292	[0.022-0.036] unit decrease	Affymetrix [9000000] (imputed)	N
733	chr8	19527535	19527536	rs4244455	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	8p21.3	NR	rs4244455-T	NR	1E-13		0.0277	[0.02-0.035] unit increase	Affymetrix [9000000] (imputed)	N
734	chr8	19534094	19534095	rs10087146	30378284	Smajlagic D	2018-10-31	Brain Behav	Moderating effect of mode of delivery on the genetics of intelligence: Explorative genome-wide analyses in ALSPAC.	Full scale intelligence quotient (cesarean section interaction)	519 European ancestry child cases, 1,902 European ancestry child controls	NA	8p21.3	NR	rs10087146-C	NR	9E-6		2.5	[1.4-3.6] unit decrease	Illumina [2141747] (imputed)	N
734	chr8	19539637	19539638	rs7816924	23726668	Hunter AM	2013-05-30	J Psychiatr Res	A genome-wide association study of a sustained pattern of antidepressant response.	Response to antidepressant treatment (citalopram)	869 European, Hispanic, African American, Asian, mixed race and other ancestry sustained response individuals, 247 European, Hispanic, African American, Asian, mixed race and other ancestry unsustained response individuals	394 European ancestry sustained response individuals, 191 European ancestry unsustained response individuals	8p21.3	CSGALNACT1	rs7816924-A	NR	2E-7		2.14	[1.53-2.99]	Affymetrix [430198]	N
734	chr8	19546253	19546254	rs55842263	33768542	Liu Y	2021-03-26	Clin Pharmacol Ther	Class II HLA Variants Associate with Risk of Pegaspargase Hypersensitivity.	Asparaginase hypersensitivity in acute lymphoblastic leukemia	310 African ancestry individuals	NA	8p21.3	NR	rs55842263-T	NR	3E-6		6.72	[NR]	Illumina [NR] (imputed)	N
734	chr8	19577266	19577267	rs1021435	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x short total sleep time interaction (2df test)	2,990 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,300 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, at least 11,842 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,350 European ancestry controls, 4,047 Hispanic/Latino controls	at least 220 African American short sleepers, 326 East Asian ancestry short sleepers, up to 5,288 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 1,292 East Asian ancestry controls, up to 20,844 European ancestry controls, 10,062 Hispanic controls	8p21.3	LPL	rs1021435-?	NR	4E-10		0.01203	[0.008-0.0161] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
734	chr8	19592260	19592261	rs78248243	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	8p21.3	NR	rs78248243-A	NR	7E-10		0.0433	[0.03-0.057] unit decrease	Affymetrix [9000000] (imputed)	N
734	chr8	19592260	19592261	rs78248243	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	8p21.3	NR	rs78248243-A	NR	2E-15		0.0583	[0.044-0.073] unit increase	Affymetrix [9000000] (imputed)	N
734	chr8	19592260	19592261	rs78248243	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	8p21.3	NR	rs78248243-A	NR	3E-10		0.0462	[0.032-0.061] unit increase	Affymetrix [9000000] (imputed)	N
734	chr8	19606547	19606548	rs113067173	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	8p21.3	NR	rs113067173-A	NR	3E-11		0.0377	[0.027-0.049] unit decrease	Affymetrix [9000000] (imputed)	N
734	chr8	19606547	19606548	rs113067173	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	8p21.3	NR	rs113067173-A	NR	1E-9		0.0359	[0.024-0.047] unit increase	Affymetrix [9000000] (imputed)	N
734	chr8	19613133	19613134	rs7833274	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	8p21.3	CSGALNACT1	rs7833274-T	0.3794	9E-10		0.012	[0.0081-0.0159] unit increase	Affymetrix [18391927] (imputed)	N
734	chr8	19614012	19614013	rs10101032	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	8p21.3		rs10101032-?	NR	2E-9				NR [~ 8900000] (imputed)	N
734	chr8	19615470	19615471	rs1388941	26265699	Karol SE	2015-08-11	Blood	Genetics of glucocorticoid-associated osteonecrosis in children with acute lymphoblastic leukemia.	Glucocorticoid-induced osteonecrosis (age 10 years and older)	230 osteonecrosis cases, 1,238 treated controls	NA	8p21.3	CSGALNACT1	rs1388941-?	NR	2E-6				Affymetrix, Illumina [NR] (imputed)	N
734	chr8	19623054	19623055	rs17091325	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	8p21.3	NR	rs17091325-A	NR	7E-13		0.0294	[0.021-0.037] unit decrease	Affymetrix [9000000] (imputed)	N
734	chr8	19623910	19623911	rs6996964	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	8p21.3	intergenic	rs6996964-T	NR	7E-8	(AA)			Illumina [up to 11995908] (imputed)	N
734	chr8	19629767	19629768	rs11204070	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	8p21.3	NR	rs11204070-G	NR	9E-23		0.0367	[0.029-0.044] unit decrease	Affymetrix [9000000] (imputed)	N
734	chr8	19629767	19629768	rs11204070	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	8p21.3	NR	rs11204070-G	NR	3E-24		0.0397	[0.032-0.047] unit increase	Affymetrix [9000000] (imputed)	N
734	chr8	19629767	19629768	rs11204070	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	8p21.3	NR	rs11204070-G	NR	2E-12		0.0275	[0.02-0.035] unit increase	Affymetrix [9000000] (imputed)	N
734	chr8	19635800	19635801	rs186197101	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large LDL	115,082 European ancestry individuals	NA	8p21.3		rs186197101-A	0.99375	2E-8		0.145673	[0.095-0.197] unit decrease	NR [11722792] (imputed)	N
734	chr8	19635800	19635801	rs186197101	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in HDL	115,082 European ancestry individuals	NA	8p21.3		rs186197101-A	0.99375	3E-9		0.140862	[0.094-0.187] unit increase	NR [11722792] (imputed)	N
734	chr8	19635800	19635801	rs186197101	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in HDL	115,082 European ancestry individuals	NA	8p21.3		rs186197101-A	0.99375	5E-8		0.130553	[0.084-0.177] unit increase	NR [11722792] (imputed)	N
734	chr8	19635800	19635801	rs186197101	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	8p21.3		rs186197101-A	0.99375	9E-9		0.138535	[0.091-0.186] unit increase	NR [11722792] (imputed)	N
734	chr8	19635800	19635801	rs186197101	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in HDL	115,082 European ancestry individuals	NA	8p21.3		rs186197101-A	0.99375	7E-9		0.135871	[0.09-0.182] unit increase	NR [11722792] (imputed)	N
734	chr8	19635800	19635801	rs186197101	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium HDL particles	115,082 European ancestry individuals	NA	8p21.3		rs186197101-A	0.99375	1E-8		0.138288	[0.09-0.186] unit increase	NR [11722792] (imputed)	N
734	chr8	19635800	19635801	rs186197101	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	8p21.3		rs186197101-A	0.99375	4E-11		0.166721	[0.12-0.22] unit increase	NR [11722792] (imputed)	N
734	chr8	19635800	19635801	rs186197101	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	8p21.3		rs186197101-A	0.99375	2E-8		0.133038	[0.086-0.18] unit increase	NR [11722792] (imputed)	N
734	chr8	19635800	19635801	rs186197101	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium HDL	115,082 European ancestry individuals	NA	8p21.3		rs186197101-A	0.99375	1E-11		0.166293	[0.12-0.21] unit increase	NR [11722792] (imputed)	N
734	chr8	19635800	19635801	rs186197101	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	8p21.3		rs186197101-A	0.99375	1E-10		0.160465	[0.11-0.21] unit increase	NR [11722792] (imputed)	N
734	chr8	19635800	19635801	rs186197101	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	8p21.3		rs186197101-A	0.99375	3E-11		0.161666	[0.11-0.21] unit increase	NR [11722792] (imputed)	N
734	chr8	19635800	19635801	rs186197101	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein A1 levels	115,082 European ancestry individuals	NA	8p21.3		rs186197101-A	0.99375	4E-8		0.132674	[0.085-0.18] unit increase	NR [11722792] (imputed)	N
734	chr8	19637237	19637238	rs62496681	33592630	Herrera-Rivero M	2021-02-16	Thromb Haemost	Single- and Multimarker Genome-Wide Scans Evidence Novel Genetic Risk Modifiers for Venous Thromboembolism.	Venous thromboembolism	964 European ancestry cases, 899 European ancestry controls	NA	8p21.3	CSGALNACT1	rs62496681-T	NR	1E-27		0.171	[0.1245-0.2349]	Illumina [484621]	N
734	chr8	19637835	19637836	rs768187	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	8p21.3	NR	rs768187-G	NR	3E-18		0.0288	[0.022-0.035] unit decrease	Affymetrix [9000000] (imputed)	N
734	chr8	19637835	19637836	rs768187	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	8p21.3	NR	rs768187-G	NR	2E-17		0.0293	[0.023-0.036] unit increase	Affymetrix [9000000] (imputed)	N
734	chr8	19637835	19637836	rs768187	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	8p21.3	NR	rs768187-G	NR	2E-12		0.0244	[0.018-0.031] unit increase	Affymetrix [9000000] (imputed)	N
734	chr8	19643479	19643480	rs7821642	34162658	Quinn MC	2021-06-23	Cancer Epidemiol Biomarkers Prev	Identification of a locus near ULK1 associated with progression-free survival in ovarian cancer.	Progression free survival in serous epithelial ovarian cancer treated with carboplatin and paclitaxel	1,751 European ancestry individuals	NA	8p21.3	NR	rs7821642-A		3E-6		0.2311	[0.13-0.33] unit decrease	Illumina [12759548] (imputed)	N
734	chr8	19644399	19644400	rs73667430	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	8p21.3	NR	rs73667430-T	NR	1E-12		0.0613	[0.044-0.078] unit increase	Affymetrix [9000000] (imputed)	N
734	chr8	19644399	19644400	rs73667430	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	8p21.3	NR	rs73667430-T	NR	6E-20		0.0823	[0.065-0.1] unit decrease	Affymetrix [9000000] (imputed)	N
734	chr8	19644399	19644400	rs73667430	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	8p21.3	NR	rs73667430-T	NR	3E-13		0.0658	[0.048-0.083] unit decrease	Affymetrix [9000000] (imputed)	N
734	chr8	19651160	19651161	rs920590	22076464	Ellinghaus E	2011-11-11	Leukemia	Identification of germline susceptibility loci in ETV6-RUNX1-rearranged childhood acute lymphoblastic leukemia.	Acute lymphoblastic leukemia (childhood)	419 European ancestry ETV6-RUNX1 positive cases, 474 European ancestry controls	951 European ancestry ETV6-RUNX1 positive cases, 326 European ancestry ETV6-RUNX1 negative cases, 3,061 European ancestry controls	8p21.3	INTS10	rs920590-C	0.31	6E-9	(ETV6-RUNX1 positive, Northern European)			Affymetrix [355750]	N
734	chr8	19651160	19651161	rs920590	22076464	Ellinghaus E	2011-11-11	Leukemia	Identification of germline susceptibility loci in ETV6-RUNX1-rearranged childhood acute lymphoblastic leukemia.	Acute lymphoblastic leukemia (childhood)	419 European ancestry ETV6-RUNX1 positive cases, 474 European ancestry controls	951 European ancestry ETV6-RUNX1 positive cases, 326 European ancestry ETV6-RUNX1 negative cases, 3,061 European ancestry controls	8p21.3	INTS10	rs920590-C	0.31	2E-6	(ETV6-RUNX1 positive)	1.19	[1.07 - 1.33 ]	Affymetrix [355750]	N
734	chr8	19652437	19652438	rs6985728	34162658	Quinn MC	2021-06-23	Cancer Epidemiol Biomarkers Prev	Identification of a locus near ULK1 associated with progression-free survival in ovarian cancer.	Progression free survival in epithelial ovarian cancer treated with carboplatin and paclitaxel	2,352 European ancestry individuals	NA	8p21.3	NR	rs6985728-A		1E-6		0.2111	[0.13-0.3] unit decrease	Illumina [12764477] (imputed)	N
735	chr8	19662936	19662937	rs79153732	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	8p21.3	INTS10	rs79153732-C	0.982612	4E-24		0.0769971	[0.062-0.092] unit decrease	Affymetrix [NR] (imputed)	N
735	chr8	19662936	19662937	rs79153732	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	8p21.3	INTS10	rs79153732-C	0.982623	5E-38		0.0938573	[0.08-0.108] unit increase	Affymetrix [NR] (imputed)	N
735	chr8	19671919	19671920	rs60882782	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in VLDL	115,082 European ancestry individuals	NA	8p21.3		rs60882782-C	0.991365	4E-10		0.137113	[0.094-0.18] unit decrease	NR [11722792] (imputed)	N
735	chr8	19671919	19671920	rs60882782	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	8p21.3		rs60882782-C	0.991364	8E-16		0.175201	[0.13-0.22] unit decrease	NR [11722792] (imputed)	N
735	chr8	19671919	19671920	rs60882782	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	8p21.3		rs60882782-C	0.991365	8E-11		0.142468	[0.1-0.185] unit decrease	NR [11722792] (imputed)	N
735	chr8	19671919	19671920	rs60882782	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	8p21.3		rs60882782-C	0.991365	1E-10		0.141569	[0.099-0.184] unit decrease	NR [11722792] (imputed)	N
735	chr8	19673972	19673973	rs3758060	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	8p21.3		rs3758060-T	0.991755	5E-11		0.143332	[0.1-0.19] unit decrease	NR [11722792] (imputed)	N
735	chr8	19673972	19673973	rs3758060	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	8p21.3		rs3758060-T	0.991757	2E-14		0.165161	[0.12-0.21] unit decrease	NR [11722792] (imputed)	N
735	chr8	19673972	19673973	rs3758060	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	8p21.3		rs3758060-T	0.991755	2E-11		0.148184	[0.1-0.19] unit decrease	NR [11722792] (imputed)	N
735	chr8	19673972	19673973	rs3758060	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	8p21.3		rs3758060-T	0.991755	3E-20		0.200601	[0.16-0.24] unit decrease	NR [11722792] (imputed)	N
735	chr8	19673972	19673973	rs3758060	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	8p21.3		rs3758060-T	0.991755	3E-8		0.120757	[0.078-0.163] unit decrease	NR [11722792] (imputed)	N
735	chr8	19673972	19673973	rs3758060	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	8p21.3		rs3758060-T	0.991755	8E-18		0.188929	[0.15-0.23] unit decrease	NR [11722792] (imputed)	N
735	chr8	19673972	19673973	rs3758060	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	8p21.3		rs3758060-T	0.991755	2E-9		0.133513	[0.09-0.177] unit decrease	NR [11722792] (imputed)	N
735	chr8	19673972	19673973	rs3758060	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	8p21.3		rs3758060-T	0.991755	9E-18		0.185798	[0.14-0.23] unit decrease	NR [11722792] (imputed)	N
735	chr8	19673972	19673973	rs3758060	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	8p21.3		rs3758060-T	0.991755	4E-12		0.153598	[0.11-0.2] unit decrease	NR [11722792] (imputed)	N
735	chr8	19673972	19673973	rs3758060	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very small VLDL	115,082 European ancestry individuals	NA	8p21.3		rs3758060-T	0.991755	1E-12		0.159132	[0.12-0.2] unit decrease	NR [11722792] (imputed)	N
735	chr8	19673972	19673973	rs3758060	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large VLDL	115,082 European ancestry individuals	NA	8p21.3		rs3758060-T	0.991755	1E-12		0.155851	[0.11-0.2] unit decrease	NR [11722792] (imputed)	N
735	chr8	19673972	19673973	rs3758060	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small VLDL	115,082 European ancestry individuals	NA	8p21.3		rs3758060-T	0.991755	4E-14		0.167639	[0.12-0.21] unit decrease	NR [11722792] (imputed)	N
735	chr8	19673972	19673973	rs3758060	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small LDL	115,082 European ancestry individuals	NA	8p21.3		rs3758060-T	0.991755	5E-13		0.161092	[0.12-0.2] unit decrease	NR [11722792] (imputed)	N
735	chr8	19673972	19673973	rs3758060	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small HDL	115,082 European ancestry individuals	NA	8p21.3		rs3758060-T	0.991755	2E-13		0.163092	[0.12-0.21] unit decrease	NR [11722792] (imputed)	N
735	chr8	19673972	19673973	rs3758060	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium VLDL	115,082 European ancestry individuals	NA	8p21.3		rs3758060-T	0.991755	9E-11		0.144586	[0.1-0.19] unit decrease	NR [11722792] (imputed)	N
735	chr8	19673972	19673973	rs3758060	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium LDL	115,082 European ancestry individuals	NA	8p21.3		rs3758060-T	0.991755	2E-11		0.150033	[0.11-0.19] unit decrease	NR [11722792] (imputed)	N
735	chr8	19673972	19673973	rs3758060	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large VLDL	115,082 European ancestry individuals	NA	8p21.3		rs3758060-T	0.991755	2E-10		0.140423	[0.097-0.184] unit decrease	NR [11722792] (imputed)	N
735	chr8	19673972	19673973	rs3758060	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	8p21.3		rs3758060-T	0.991755	1E-8		0.126326	[0.083-0.17] unit decrease	NR [11722792] (imputed)	N
735	chr8	19673972	19673973	rs3758060	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in VLDL	115,082 European ancestry individuals	NA	8p21.3		rs3758060-T	0.991755	4E-12		0.153479	[0.11-0.2] unit decrease	NR [11722792] (imputed)	N
735	chr8	19673972	19673973	rs3758060	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in IDL	115,082 European ancestry individuals	NA	8p21.3		rs3758060-T	0.991755	2E-9		0.134978	[0.091-0.179] unit decrease	NR [11722792] (imputed)	N
735	chr8	19673972	19673973	rs3758060	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total triglycerides levels	115,082 European ancestry individuals	NA	8p21.3		rs3758060-T	0.991755	4E-12		0.154082	[0.11-0.2] unit decrease	NR [11722792] (imputed)	N
735	chr8	19673972	19673973	rs3758060	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large VLDL	115,082 European ancestry individuals	NA	8p21.3		rs3758060-T	0.991755	3E-12		0.154675	[0.11-0.2] unit decrease	NR [11722792] (imputed)	N
735	chr8	19673972	19673973	rs3758060	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large VLDL	115,082 European ancestry individuals	NA	8p21.3		rs3758060-T	0.991755	3E-11		0.148211	[0.1-0.19] unit decrease	NR [11722792] (imputed)	N
735	chr8	19673972	19673973	rs3758060	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	8p21.3		rs3758060-T	0.991755	6E-12		0.139098	[0.099-0.179] unit increase	NR [11722792] (imputed)	N
735	chr8	19673972	19673973	rs3758060	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	8p21.3		rs3758060-T	0.991755	1E-10		0.14292	[0.099-0.186] unit decrease	NR [11722792] (imputed)	N
735	chr8	19673972	19673973	rs3758060	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	8p21.3		rs3758060-T	0.99175	8E-18		0.183351	[0.14-0.23] unit decrease	NR [11722792] (imputed)	N
735	chr8	19673972	19673973	rs3758060	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	8p21.3		rs3758060-T	0.99175	4E-9		0.130417	[0.087-0.174] unit increase	NR [11722792] (imputed)	N
735	chr8	19673972	19673973	rs3758060	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to monounsaturated fatty acids	115,006 European ancestry individuals	NA	8p21.3		rs3758060-T	0.99175	1E-12		0.156744	[0.11-0.2] unit increase	NR [11722792] (imputed)	N
735	chr8	19673972	19673973	rs3758060	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	8p21.3		rs3758060-T	0.99175	2E-10		0.139945	[0.097-0.183] unit increase	NR [11722792] (imputed)	N
735	chr8	19673972	19673973	rs3758060	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of monounsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	8p21.3		rs3758060-T	0.99175	2E-14		0.16939	[0.13-0.21] unit decrease	NR [11722792] (imputed)	N
735	chr8	19673972	19673973	rs3758060	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	8p21.3		rs3758060-T	0.991755	5E-10		0.13673	[0.094-0.18] unit increase	NR [11722792] (imputed)	N
735	chr8	19673972	19673973	rs3758060	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	8p21.3		rs3758060-T	0.991755	1E-11		0.148274	[0.11-0.19] unit decrease	NR [11722792] (imputed)	N
735	chr8	19673972	19673973	rs3758060	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large VLDL	115,082 European ancestry individuals	NA	8p21.3		rs3758060-T	0.991755	4E-12		0.153666	[0.11-0.2] unit decrease	NR [11722792] (imputed)	N
735	chr8	19673972	19673973	rs3758060	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large VLDL	115,082 European ancestry individuals	NA	8p21.3		rs3758060-T	0.991755	1E-12		0.157504	[0.11-0.2] unit decrease	NR [11722792] (imputed)	N
735	chr8	19673972	19673973	rs3758060	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large HDL	115,082 European ancestry individuals	NA	8p21.3		rs3758060-T	0.991755	1E-11		0.13696	[0.097-0.177] unit increase	NR [11722792] (imputed)	N
735	chr8	19673972	19673973	rs3758060	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	8p21.3		rs3758060-T	0.991755	1E-11		0.1503	[0.11-0.19] unit decrease	NR [11722792] (imputed)	N
735	chr8	19673972	19673973	rs3758060	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	HDL cholesterol levels	115,082 European ancestry individuals	NA	8p21.3		rs3758060-T	0.991755	1E-14		0.158838	[0.12-0.2] unit increase	NR [11722792] (imputed)	N
735	chr8	19673972	19673973	rs3758060	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	8p21.3		rs3758060-T	0.991755	2E-10		0.139115	[0.096-0.182] unit increase	NR [11722792] (imputed)	N
735	chr8	19673972	19673973	rs3758060	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	8p21.3		rs3758060-T	0.991755	5E-11		0.145787	[0.1-0.19] unit increase	NR [11722792] (imputed)	N
735	chr8	19673972	19673973	rs3758060	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	8p21.3		rs3758060-T	0.991755	2E-13		0.161716	[0.12-0.2] unit increase	NR [11722792] (imputed)	N
735	chr8	19673972	19673973	rs3758060	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	8p21.3		rs3758060-T	0.991755	7E-10		0.126039	[0.086-0.166] unit increase	NR [11722792] (imputed)	N
735	chr8	19673972	19673973	rs3758060	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	8p21.3		rs3758060-T	0.991755	4E-13		0.158645	[0.12-0.2] unit increase	NR [11722792] (imputed)	N
735	chr8	19673972	19673973	rs3758060	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	8p21.3		rs3758060-T	0.991755	9E-12		0.151989	[0.11-0.2] unit decrease	NR [11722792] (imputed)	N
735	chr8	19673972	19673973	rs3758060	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	8p21.3		rs3758060-T	0.991755	6E-12		0.152835	[0.11-0.2] unit decrease	NR [11722792] (imputed)	N
735	chr8	19673972	19673973	rs3758060	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	8p21.3		rs3758060-T	0.991755	6E-11		0.132293	[0.093-0.172] unit increase	NR [11722792] (imputed)	N
735	chr8	19673972	19673973	rs3758060	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	8p21.3		rs3758060-T	0.991755	2E-11		0.147897	[0.1-0.19] unit decrease	NR [11722792] (imputed)	N
735	chr8	19673972	19673973	rs3758060	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large VLDL particles	115,082 European ancestry individuals	NA	8p21.3		rs3758060-T	0.991755	1E-12		0.1573	[0.11-0.2] unit decrease	NR [11722792] (imputed)	N
735	chr8	19673972	19673973	rs3758060	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large VLDL particles	115,082 European ancestry individuals	NA	8p21.3		rs3758060-T	0.991755	3E-12		0.154836	[0.11-0.2] unit decrease	NR [11722792] (imputed)	N
735	chr8	19673972	19673973	rs3758060	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	8p21.3		rs3758060-T	0.991755	1E-11		0.137042	[0.097-0.177] unit increase	NR [11722792] (imputed)	N
735	chr8	19673972	19673973	rs3758060	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of chylomicrons and extremely large VLDL particles	115,082 European ancestry individuals	NA	8p21.3		rs3758060-T	0.991755	2E-11		0.147975	[0.1-0.19] unit decrease	NR [11722792] (imputed)	N
735	chr8	19673972	19673973	rs3758060	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	8p21.3		rs3758060-T	0.991755	7E-13		0.155094	[0.11-0.2] unit increase	NR [11722792] (imputed)	N
735	chr8	19673972	19673973	rs3758060	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	8p21.3		rs3758060-T	0.991755	2E-10		0.137746	[0.096-0.18] unit increase	NR [11722792] (imputed)	N
735	chr8	19673972	19673973	rs3758060	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	8p21.3		rs3758060-T	0.991755	2E-14		0.170525	[0.13-0.21] unit increase	NR [11722792] (imputed)	N
735	chr8	19673972	19673973	rs3758060	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in IDL	115,082 European ancestry individuals	NA	8p21.3		rs3758060-T	0.991755	2E-11		0.151136	[0.11-0.2] unit increase	NR [11722792] (imputed)	N
735	chr8	19673972	19673973	rs3758060	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	8p21.3		rs3758060-T	0.991755	2E-14		0.155239	[0.12-0.2] unit increase	NR [11722792] (imputed)	N
735	chr8	19673972	19673973	rs3758060	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	8p21.3		rs3758060-T	0.991755	2E-12		0.156887	[0.11-0.2] unit decrease	NR [11722792] (imputed)	N
735	chr8	19673972	19673973	rs3758060	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	8p21.3		rs3758060-T	0.991755	8E-16		0.166766	[0.13-0.21] unit increase	NR [11722792] (imputed)	N
735	chr8	19673972	19673973	rs3758060	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	8p21.3		rs3758060-T	0.991755	3E-12		0.151854	[0.11-0.19] unit increase	NR [11722792] (imputed)	N
735	chr8	19673972	19673973	rs3758060	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	8p21.3		rs3758060-T	0.991755	1E-9		0.131233	[0.089-0.174] unit increase	NR [11722792] (imputed)	N
735	chr8	19673972	19673973	rs3758060	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	8p21.3		rs3758060-T	0.991755	3E-16		0.179154	[0.14-0.22] unit increase	NR [11722792] (imputed)	N
735	chr8	19673972	19673973	rs3758060	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	8p21.3		rs3758060-T	0.991755	1E-12		0.158913	[0.12-0.2] unit increase	NR [11722792] (imputed)	N
735	chr8	19673972	19673973	rs3758060	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	8p21.3		rs3758060-T	0.991755	1E-13		0.150459	[0.11-0.19] unit increase	NR [11722792] (imputed)	N
735	chr8	19673972	19673973	rs3758060	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	8p21.3		rs3758060-T	0.991755	4E-12		0.153588	[0.11-0.2] unit decrease	NR [11722792] (imputed)	N
735	chr8	19673972	19673973	rs3758060	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for VLDL particles	115,082 European ancestry individuals	NA	8p21.3		rs3758060-T	0.991755	4E-11		0.142047	[0.1-0.184] unit decrease	NR [11722792] (imputed)	N
735	chr8	19673972	19673973	rs3758060	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	8p21.3		rs3758060-T	0.991755	6E-9		0.118565	[0.079-0.159] unit increase	NR [11722792] (imputed)	N
735	chr8	19680258	19680259	rs60329942	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x long total sleep time interaction (2df test)	at least 2,926 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, at least 7,664 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,906 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 31,986 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 317 East Asian ancestry long sleepers, up to 5,171 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 928 African American controls, 1,301 East Asian ancestry controls, up to 20,961 European ancestry controls, 10,064 Hispanic controls	8p21.3	LPL	rs60329942-?	NR	3E-13		0.01654	[0.012-0.021] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
735	chr8	19685908	19685909	rs7017697	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	8p21.3	NR	rs7017697-T	0.6711	1E-6	(EA)	0.0319	[0.019-0.045] unit decrease	Illumina [~ 11800000] (imputed)	N
735	chr8	19692424	19692425	rs75032664	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	8p21.3	INTS10	rs75032664-C	0.987091	2E-9		0.0549281	[0.037-0.073] unit increase	Affymetrix [NR] (imputed)	N
735	chr8	19694419	19694420	rs140329088	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	8p21.3		rs140329088-?	NR	1E-9				NR [~ 8900000] (imputed)	N
735	chr8	19722203	19722204	rs117860853	33760818	Francis M	2021-03-24	PLoS Genet	Genome-wide association study of fish oil supplementation on lipid traits in 81,246 individuals reveals new gene-diet interaction loci.	HDL levels x fish oil supplementation interaction (2df)	67,544 European ancestry individuals	7,284 European ancestry individuals	8p21.3	LPL	rs117860853-A	0.0137	5E-28				Affymetrix [7954107] (imputed)	N
735	chr8	19727046	19727047	rs1441778	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	8p21.3	NR	rs1441778-T	NR	1E-80		0.0621	[0.056-0.069] unit increase	Affymetrix [9000000] (imputed)	N
735	chr8	19727046	19727047	rs1441778	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	8p21.3	NR	rs1441778-T	NR	1E-80		0.065	[0.058-0.072] unit decrease	Affymetrix [9000000] (imputed)	N
735	chr8	19727046	19727047	rs1441778	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	8p21.3	NR	rs1441778-T	NR	8E-45		0.0481	[0.041-0.055] unit decrease	Affymetrix [9000000] (imputed)	N
735	chr8	19727046	19727047	rs1441778	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x short total sleep time interaction (2df test)	2,990 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,300 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, at least 11,842 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,350 European ancestry controls, 4,047 Hispanic/Latino controls	at least 220 African American short sleepers, 326 East Asian ancestry short sleepers, up to 5,288 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 1,292 East Asian ancestry controls, up to 20,844 European ancestry controls, 10,062 Hispanic controls	8p21.3	LPL	rs1441778-?	NR	6E-18		0.01861	[0.013-0.024] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
735	chr8	19727046	19727047	rs1441778	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x long total sleep time interaction (2df test)	at least 2,926 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, at least 7,664 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,906 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 31,986 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 317 East Asian ancestry long sleepers, up to 5,171 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 928 African American controls, 1,301 East Asian ancestry controls, up to 20,961 European ancestry controls, 10,064 Hispanic controls	8p21.3	LPL	rs1441778-?	NR	1E-10		0.01576	[0.01-0.021] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
735	chr8	19727046	19727047	rs1441778	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x short total sleep time interaction (2df test)	3,007 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,474 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, up to 11,901 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,567 European ancestry controls, 4,047 Hispanic/Latino controls	up to 221 African American short sleepers, 629 East Asian ancestry short sleepers, up to 9,585 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 2,504 East Asian ancestry controls, up to 38,027 European ancestry controls, 10,061 Hispanic controls	8p21.3	LPL	rs1441778-?	NR	2E-24		0.01059	[0.0081-0.0131] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
735	chr8	19727046	19727047	rs1441778	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x long total sleep time interaction (2df test)	2,933 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, up to 7,870 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,975 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 32,171 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 616 East Asian ancestry long sleepers, up to 9,486 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 929 African American controls, 2,517 East Asian ancestry controls, up to 38,126 European ancestry controls, 10,063 Hispanic controls	8p21.3	LPL	rs1441778-?	NR	8E-18		0.01012	[0.0076-0.0126] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
735	chr8	19736153	19736154	rs149352150	28430825	Ng MCY	2017-04-21	PLoS Genet	Discovery and fine-mapping of adiposity loci using high density imputation of genome-wide association studies in individuals of African ancestry: African Ancestry Anthropometry Genetics Consortium.	Body mass index (adult)	16,559 African ancestry men, 26,193 African ancestry women	2,458 African ancestry men, 7,685 African ancestry women, 152,893 European ancestry men, 171,977 European ancestry women	8p21.3	INTS10, LPL	rs149352150-G	0.013	5E-8	(AA, Men)	0.299	[0.19-0.41] unit increase	Affymetrix, Illumina [17972087] (imputed)	N
735	chr8	19745039	19745039	rs10635970	32902719	Hebbar P	2020-09-09	Hum Genet	Genome-wide landscape establishes novel association signals for metabolic traits in the Arab population.	Total cholesterol levels	2,732 Kuwaiti ancestry individuals	NA	8p21.3	INTS10, LPL	rs10635970-?	NR	8E-7		4.927	NR unit increase	Illumina [up to 1520000] (imputed)	N
735	chr8	19745039	19745039	rs10635970	32902719	Hebbar P	2020-09-09	Hum Genet	Genome-wide landscape establishes novel association signals for metabolic traits in the Arab population.	NHDL cholesterol levels	2,732 Kuwaiti ancestry individuals	NA	8p21.3	INTS10, LPL	rs10635970-?	NR	4E-7		5.077	NR unit increase	Illumina [up to 1520000] (imputed)	N
735	chr8	19745039	19745039	rs10635970	32902719	Hebbar P	2020-09-09	Hum Genet	Genome-wide landscape establishes novel association signals for metabolic traits in the Arab population.	Low density lipoprotein cholesterol levels	2,732 Kuwaiti ancestry individuals	NA	8p21.3	INTS10, LPL	rs10635970-?	NR	2E-8		5.602	NR unit decrease	Illumina [up to 1520000] (imputed)	N
735	chr8	19746875	19746876	rs17482310	29632305	Lee HS	2018-04-09	Sci Rep	New Common and Rare Variants Influencing Metabolic Syndrome and Its Individual Components in a Korean Population.	Metabolic syndrome (multivariate analysis)	1,946 Korean ancestry cases, 6,427 Korean ancestry controls	430 Korean ancestry cases, 3,264 Korean ancestry controls	8p21.3	LPL	rs17482310-?	NR	7E-10				Affymetrix [344366]	N
735	chr8	19746875	19746876	rs17482310	29632305	Lee HS	2018-04-09	Sci Rep	New Common and Rare Variants Influencing Metabolic Syndrome and Its Individual Components in a Korean Population.	Metabolic syndrome (multivariate analysis)	1,946 Korean ancestry cases, 6,427 Korean ancestry controls	430 Korean ancestry cases, 3,264 Korean ancestry controls	8p21.3	LOC105379309	rs17482310-?	NR	8E-8				Affymetrix [344366]	N
735	chr8	19748920	19748921	rs1866956	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	8p21.3	NR	rs1866956-T	NR	3E-26		0.027	[0.022-0.032] unit decrease	Affymetrix [9000000] (imputed)	N
735	chr8	19748920	19748921	rs1866956	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	8p21.3	NR	rs1866956-T	NR	8E-24		0.0268	[0.022-0.032] unit increase	Affymetrix [9000000] (imputed)	N
735	chr8	19748920	19748921	rs1866956	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	8p21.3	NR	rs1866956-T	NR	1E-12		0.0191	[0.014-0.024] unit increase	Affymetrix [9000000] (imputed)	N
735	chr8	19748988	19748989	rs74345411	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	8p21.3	NR	rs74345411-A	NR	1E-13		0.0756	[0.056-0.096] unit decrease	Affymetrix [9000000] (imputed)	N
735	chr8	19748988	19748989	rs74345411	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	8p21.3	NR	rs74345411-A	NR	2E-19		0.0964	[0.075-0.117] unit increase	Affymetrix [9000000] (imputed)	N
735	chr8	19748988	19748989	rs74345411	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	8p21.3	NR	rs74345411-A	NR	5E-11		0.0704	[0.049-0.091] unit increase	Affymetrix [9000000] (imputed)	N
735	chr8	19749389	19749390	rs3898938	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x short total sleep time interaction (2df test)	2,990 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,300 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, at least 11,842 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,350 European ancestry controls, 4,047 Hispanic/Latino controls	at least 220 African American short sleepers, 326 East Asian ancestry short sleepers, up to 5,288 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 1,292 East Asian ancestry controls, up to 20,844 European ancestry controls, 10,062 Hispanic controls	8p21.3	LPL	rs3898938-?	NR	2E-10		0.01291	[0.0089-0.0169] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
735	chr8	19749389	19749390	rs3898938	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x short total sleep time interaction (2df test)	3,007 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,474 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, up to 11,901 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,567 European ancestry controls, 4,047 Hispanic/Latino controls	up to 221 African American short sleepers, 629 East Asian ancestry short sleepers, up to 9,585 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 2,504 East Asian ancestry controls, up to 38,027 European ancestry controls, 10,061 Hispanic controls	8p21.3	LPL	rs3898938-?	NR	1E-10		0.006066	[0.0042-0.0079] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
735	chr8	19750043	19750044	rs59347135	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in LDL	115,082 European ancestry individuals	NA	8p21.3		rs59347135-C	0.954197	2E-10		0.0632192	[0.044-0.083] unit decrease	NR [11722792] (imputed)	N
735	chr8	19750043	19750044	rs59347135	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small VLDL	115,082 European ancestry individuals	NA	8p21.3		rs59347135-C	0.954197	5E-13		0.0723881	[0.053-0.092] unit decrease	NR [11722792] (imputed)	N
735	chr8	19750043	19750044	rs59347135	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium VLDL	115,082 European ancestry individuals	NA	8p21.3		rs59347135-C	0.954197	2E-9		0.0608949	[0.041-0.081] unit decrease	NR [11722792] (imputed)	N
735	chr8	19750043	19750044	rs59347135	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small VLDL	115,082 European ancestry individuals	NA	8p21.3		rs59347135-C	0.954197	5E-9		0.0590788	[0.039-0.079] unit decrease	NR [11722792] (imputed)	N
735	chr8	19750043	19750044	rs59347135	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in VLDL	115,082 European ancestry individuals	NA	8p21.3		rs59347135-C	0.954197	2E-11		0.0674583	[0.048-0.087] unit decrease	NR [11722792] (imputed)	N
735	chr8	19750043	19750044	rs59347135	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in VLDL	115,082 European ancestry individuals	NA	8p21.3		rs59347135-C	0.954197	6E-10		0.0622057	[0.042-0.082] unit decrease	NR [11722792] (imputed)	N
735	chr8	19750043	19750044	rs59347135	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small VLDL particles	115,082 European ancestry individuals	NA	8p21.3		rs59347135-C	0.954197	3E-14		0.0758463	[0.056-0.095] unit decrease	NR [11722792] (imputed)	N
735	chr8	19750043	19750044	rs59347135	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of VLDL particles	115,082 European ancestry individuals	NA	8p21.3		rs59347135-C	0.954197	4E-10		0.0628926	[0.043-0.083] unit decrease	NR [11722792] (imputed)	N
735	chr8	19750043	19750044	rs59347135	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large VLDL	115,082 European ancestry individuals	NA	8p21.3		rs59347135-C	0.954197	2E-12		0.0705267	[0.051-0.09] unit decrease	NR [11722792] (imputed)	N
735	chr8	19750043	19750044	rs59347135	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small VLDL	115,082 European ancestry individuals	NA	8p21.3		rs59347135-C	0.954197	1E-9		0.0614144	[0.042-0.081] unit decrease	NR [11722792] (imputed)	N
735	chr8	19750043	19750044	rs59347135	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large VLDL	115,082 European ancestry individuals	NA	8p21.3		rs59347135-C	0.954197	2E-12		0.0703437	[0.051-0.09] unit decrease	NR [11722792] (imputed)	N
735	chr8	19750043	19750044	rs59347135	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	8p21.3		rs59347135-C	0.954197	4E-8		0.0558975	[0.036-0.076] unit decrease	NR [11722792] (imputed)	N
735	chr8	19750043	19750044	rs59347135	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	8p21.3	LPL	rs59347135-C	0.953794	1E-63		0.0806336	[0.071-0.09] unit increase	Affymetrix [NR] (imputed)	N
735	chr8	19750950	19750951	rs112861901	32902719	Hebbar P	2020-09-09	Hum Genet	Genome-wide landscape establishes novel association signals for metabolic traits in the Arab population.	High density lipoprotein cholesterol levels	2,732 Kuwaiti ancestry individuals	NA	8p21.3	intergenic	rs112861901-?	NR	4E-8		5.479	NR unit increase	Illumina [up to 1520000] (imputed)	N
735	chr8	19753466	19753467	rs80041799	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	HDL cholesterol levels	115,082 European ancestry individuals	NA	8p21.3		rs80041799-C	0.987219	7E-9		0.0948221	[0.063-0.127] unit decrease	NR [11722792] (imputed)	N
735	chr8	19753466	19753467	rs80041799	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	8p21.3		rs80041799-C	0.987219	4E-9		0.0968777	[0.065-0.129] unit decrease	NR [11722792] (imputed)	N
735	chr8	19755756	19755757	rs80237246	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	8p21.3		rs80237246-C	0.986806	5E-9		0.100178	[0.067-0.134] unit increase	NR [11722792] (imputed)	N
735	chr8	19755756	19755757	rs80237246	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	8p21.3		rs80237246-C	0.986806	3E-9		0.102301	[0.068-0.136] unit increase	NR [11722792] (imputed)	N
735	chr8	19755756	19755757	rs80237246	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	8p21.3		rs80237246-C	0.986806	5E-10		0.106155	[0.073-0.14] unit increase	NR [11722792] (imputed)	N
735	chr8	19755756	19755757	rs80237246	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	8p21.3		rs80237246-C	0.986806	3E-8		0.0950065	[0.061-0.129] unit decrease	NR [11722792] (imputed)	N
735	chr8	19757299	19757300	rs1441771	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8p21.3	INTS10	rs1441771-?	NR	7E-6	(DAG 34:2)	0.19316109	[0.11-0.28] unit decrease	Affymetrix [at least 2500000] (imputed)	N
735	chr8	19757299	19757300	rs1441771	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8p21.3	INTS10	rs1441771-?	NR	3E-6	(DAG 34:1)	0.19816898	[0.11-0.28] unit decrease	Affymetrix [at least 2500000] (imputed)	N
735	chr8	19757318	19757319	rs1441770	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x long total sleep time interaction (2df test)	at least 2,926 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, at least 7,664 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,906 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 31,986 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 317 East Asian ancestry long sleepers, up to 5,171 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 928 African American controls, 1,301 East Asian ancestry controls, up to 20,961 European ancestry controls, 10,064 Hispanic controls	8p21.3	LPL	rs1441770-?	NR	2E-14		0.01405	[0.0099-0.0182] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
735	chr8	19757318	19757319	rs1441770	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x short total sleep time interaction (2df test)	3,007 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,474 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, up to 11,901 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,567 European ancestry controls, 4,047 Hispanic/Latino controls	up to 221 African American short sleepers, 629 East Asian ancestry short sleepers, up to 9,585 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 2,504 East Asian ancestry controls, up to 38,027 European ancestry controls, 10,061 Hispanic controls	8p21.3	LPL	rs1441770-?	NR	2E-18		0.008593	[0.0066-0.0106] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
735	chr8	19761630	19761631	rs75591007	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	VLDL cholesterol levels	115,082 European ancestry individuals	NA	8p21.3		rs75591007-T	0.982289	2E-14		0.120108	[0.089-0.151] unit decrease	NR [11722792] (imputed)	N
735	chr8	19761630	19761631	rs75591007	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small VLDL	115,082 European ancestry individuals	NA	8p21.3		rs75591007-T	0.982289	2E-25		0.161166	[0.13-0.19] unit decrease	NR [11722792] (imputed)	N
735	chr8	19761630	19761631	rs75591007	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in IDL	115,082 European ancestry individuals	NA	8p21.3		rs75591007-T	0.982289	2E-19		0.142263	[0.11-0.17] unit decrease	NR [11722792] (imputed)	N
735	chr8	19761630	19761631	rs75591007	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small VLDL	115,082 European ancestry individuals	NA	8p21.3		rs75591007-T	0.982289	1E-16		0.12959	[0.099-0.16] unit decrease	NR [11722792] (imputed)	N
735	chr8	19761630	19761631	rs75591007	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium VLDL	115,082 European ancestry individuals	NA	8p21.3		rs75591007-T	0.982289	2E-13		0.115254	[0.085-0.146] unit decrease	NR [11722792] (imputed)	N
735	chr8	19761630	19761631	rs75591007	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium VLDL particles	115,082 European ancestry individuals	NA	8p21.3		rs75591007-T	0.982289	1E-14		0.120312	[0.09-0.151] unit decrease	NR [11722792] (imputed)	N
735	chr8	19761630	19761631	rs75591007	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of VLDL particles	115,082 European ancestry individuals	NA	8p21.3		rs75591007-T	0.982289	5E-19		0.138508	[0.11-0.17] unit decrease	NR [11722792] (imputed)	N
735	chr8	19761630	19761631	rs75591007	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small VLDL	115,082 European ancestry individuals	NA	8p21.3		rs75591007-T	0.982289	2E-17		0.133397	[0.1-0.16] unit decrease	NR [11722792] (imputed)	N
735	chr8	19761630	19761631	rs75591007	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	8p21.3		rs75591007-T	0.982289	1E-14		0.12118	[0.09-0.152] unit decrease	NR [11722792] (imputed)	N
735	chr8	19766232	19766233	rs139915535	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	8p21.3	LPL	rs139915535-A	0.981965	3E-10		0.0492544	[0.034-0.065] unit decrease	Affymetrix [NR] (imputed)	N
735	chr8	19766232	19766233	rs139915535	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	8p21.3	LPL	rs139915535-A	0.981937	8E-85		0.143689	[0.13-0.16] unit increase	Affymetrix [NR] (imputed)	N
735	chr8	19768149	19768150	rs142084074	33760818	Francis M	2021-03-24	PLoS Genet	Genome-wide association study of fish oil supplementation on lipid traits in 81,246 individuals reveals new gene-diet interaction loci.	Triglyceride levels x fish oil supplementation interaction (2df)	73,908 European ancestry individuals	7,284 European ancestry individuals	8p21.3	LOC107986921	rs142084074-A	0.015	3E-12				Affymetrix [7953600] (imputed)	N
735	chr8	19769198	19769199	rs140285970	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium LDL	115,082 European ancestry individuals	NA	8p21.3		rs140285970-G	0.984591	9E-24		0.166309	[0.13-0.2] unit decrease	NR [11722792] (imputed)	N
735	chr8	19769198	19769199	rs140285970	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	8p21.3		rs140285970-G	0.984587	3E-12		0.108532	[0.078-0.139] unit increase	NR [11722792] (imputed)	N
735	chr8	19773154	19773155	rs144503444	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in LDL	115,082 European ancestry individuals	NA	8p21.3		rs144503444-T	0.981747	2E-20		0.141428	[0.11-0.17] unit decrease	NR [11722792] (imputed)	N
735	chr8	19777694	19777695	rs75218485	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	8p21.3	NR	rs75218485-T	NR	9E-119		0.1844	[0.17-0.2] unit decrease	Affymetrix [9000000] (imputed)	N
735	chr8	19777694	19777695	rs75218485	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	8p21.3	NR	rs75218485-T	NR	1E-86		0.1641	[0.15-0.18] unit increase	Affymetrix [9000000] (imputed)	N
735	chr8	19777694	19777695	rs75218485	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	8p21.3	NR	rs75218485-T	NR	2E-10		0.051	[0.035-0.067] unit decrease	Affymetrix [9000000] (imputed)	N
735	chr8	19777694	19777695	rs75218485	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	8p21.3	NR	rs75218485-T	NR	1E-45		0.1184	[0.1-0.13] unit increase	Affymetrix [9000000] (imputed)	N
735	chr8	19785655	19785656	rs7011846	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	8p21.3	LPL	rs7011846-A	0.033786	1E-10		1.16	[1.11-1.21]	NR [8126035] (imputed)	N
735	chr8	19785655	19785656	rs7011846	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 2,680 cases, 380,970 European ancestry controls, 73,242 controls	NA	8p21.3	LPL	rs7011846-A	0.032209	3E-10		1.22	[1.15-1.30]	NR [10903881] (imputed)	N
735	chr8	19785655	19785656	rs7011846	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	8p21.3	intergenic	rs7011846-A	0.035	4E-9		0.113	[0.076-0.15] unit increase	Affymetrix [7947838] (imputed)	N
735	chr8	19786890	19786891	rs7816032	18821565	Lasky-Su J	2008-12-05	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association scan of quantitative traits for attention deficit hyperactivity disorder identifies novel associations and confirms candidate gene associations.	Hyperactive-impulsive symptoms	930 European ancestry trios	NA	8p21.3	LPL	rs7816032-?	NR	2E-6	(count)			Perlegen [429981]	N
735	chr8	19789997	19789998	rs150331294	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	8p21.3		rs150331294-A	NR	1E-12		0.0205	[0.015-0.026] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
736	chr8	19793580	19793581	rs190118115	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	8p21.3	LPL	rs190118115-T	0.019261	2E-13		0.061700955	[0.045-0.078] unit decrease	Affymetrix [93095623] (imputed)	N
736	chr8	19800528	19800529	rs6997330	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	8p21.3	LPL	rs6997330-C	0.044	8E-11		0.1291	[0.09-0.168] unit increase	NR [8041861] (imputed)	N
736	chr8	19802710	19802711	rs28615996	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x long total sleep time interaction (2df test)	at least 2,926 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, at least 7,664 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,906 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 31,986 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 317 East Asian ancestry long sleepers, up to 5,171 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 928 African American controls, 1,301 East Asian ancestry controls, up to 20,961 European ancestry controls, 10,064 Hispanic controls	8p21.3	LPL	rs28615996-?	NR	4E-9		0.03312	[0.022-0.045] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
736	chr8	19802710	19802711	rs28615996	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x long total sleep time interaction (2df test)	2,933 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, up to 7,870 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,975 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 32,171 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 616 East Asian ancestry long sleepers, up to 9,486 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 929 African American controls, 2,517 East Asian ancestry controls, up to 38,126 European ancestry controls, 10,063 Hispanic controls	8p21.3	LPL	rs28615996-?	NR	2E-13		0.02086	[0.015-0.027] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
736	chr8	19803083	19803084	rs6999612	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	8p21.3		rs6999612-T	0.981904	2E-22		0.143543	[0.11-0.17] unit decrease	NR [11722792] (imputed)	N
736	chr8	19803083	19803084	rs6999612	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	8p21.3		rs6999612-T	0.9819	1E-26		0.155726	[0.13-0.18] unit decrease	NR [11722792] (imputed)	N
736	chr8	19803083	19803084	rs6999612	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	8p21.3		rs6999612-T	0.981904	1E-18		0.132004	[0.1-0.16] unit decrease	NR [11722792] (imputed)	N
736	chr8	19803083	19803084	rs6999612	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	8p21.3		rs6999612-T	0.981904	2E-38		0.190955	[0.16-0.22] unit decrease	NR [11722792] (imputed)	N
736	chr8	19803083	19803084	rs6999612	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	8p21.3		rs6999612-T	0.981904	7E-32		0.174361	[0.15-0.2] unit decrease	NR [11722792] (imputed)	N
736	chr8	19803083	19803084	rs6999612	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	8p21.3		rs6999612-T	0.981904	5E-15		0.118381	[0.089-0.148] unit decrease	NR [11722792] (imputed)	N
736	chr8	19803083	19803084	rs6999612	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	8p21.3		rs6999612-T	0.981904	2E-29		0.164387	[0.14-0.19] unit decrease	NR [11722792] (imputed)	N
736	chr8	19803083	19803084	rs6999612	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	8p21.3		rs6999612-T	0.981904	7E-25		0.15351	[0.12-0.18] unit decrease	NR [11722792] (imputed)	N
736	chr8	19803083	19803084	rs6999612	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very small VLDL	115,082 European ancestry individuals	NA	8p21.3		rs6999612-T	0.981904	2E-27		0.16379	[0.13-0.19] unit decrease	NR [11722792] (imputed)	N
736	chr8	19803083	19803084	rs6999612	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large VLDL	115,082 European ancestry individuals	NA	8p21.3		rs6999612-T	0.981904	2E-23		0.14783	[0.12-0.18] unit decrease	NR [11722792] (imputed)	N
736	chr8	19803083	19803084	rs6999612	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small VLDL	115,082 European ancestry individuals	NA	8p21.3		rs6999612-T	0.981904	6E-32		0.176228	[0.15-0.21] unit decrease	NR [11722792] (imputed)	N
736	chr8	19803083	19803084	rs6999612	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small LDL	115,082 European ancestry individuals	NA	8p21.3		rs6999612-T	0.981904	2E-25		0.157361	[0.13-0.19] unit decrease	NR [11722792] (imputed)	N
736	chr8	19803083	19803084	rs6999612	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small HDL	115,082 European ancestry individuals	NA	8p21.3		rs6999612-T	0.981904	1E-24		0.153697	[0.12-0.18] unit decrease	NR [11722792] (imputed)	N
736	chr8	19803083	19803084	rs6999612	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium VLDL	115,082 European ancestry individuals	NA	8p21.3		rs6999612-T	0.981904	4E-25		0.155959	[0.13-0.19] unit decrease	NR [11722792] (imputed)	N
736	chr8	19803083	19803084	rs6999612	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large VLDL	115,082 European ancestry individuals	NA	8p21.3		rs6999612-T	0.981904	3E-22		0.145036	[0.12-0.17] unit decrease	NR [11722792] (imputed)	N
736	chr8	19803083	19803084	rs6999612	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	8p21.3		rs6999612-T	0.981904	3E-13		0.109472	[0.08-0.139] unit decrease	NR [11722792] (imputed)	N
736	chr8	19803083	19803084	rs6999612	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in VLDL	115,082 European ancestry individuals	NA	8p21.3		rs6999612-T	0.981904	2E-24		0.152088	[0.12-0.18] unit decrease	NR [11722792] (imputed)	N
736	chr8	19803083	19803084	rs6999612	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in IDL	115,082 European ancestry individuals	NA	8p21.3		rs6999612-T	0.981904	4E-19		0.135469	[0.11-0.17] unit decrease	NR [11722792] (imputed)	N
736	chr8	19803083	19803084	rs6999612	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total triglycerides levels	115,082 European ancestry individuals	NA	8p21.3		rs6999612-T	0.981904	4E-24		0.151728	[0.12-0.18] unit decrease	NR [11722792] (imputed)	N
736	chr8	19803083	19803084	rs6999612	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large VLDL	115,082 European ancestry individuals	NA	8p21.3		rs6999612-T	0.981904	2E-24		0.152105	[0.12-0.18] unit decrease	NR [11722792] (imputed)	N
736	chr8	19803083	19803084	rs6999612	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large HDL	115,082 European ancestry individuals	NA	8p21.3		rs6999612-T	0.981904	2E-10		0.0885852	[0.061-0.116] unit increase	NR [11722792] (imputed)	N
736	chr8	19803083	19803084	rs6999612	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium VLDL	115,082 European ancestry individuals	NA	8p21.3		rs6999612-T	0.981904	2E-17		0.130711	[0.1-0.16] unit decrease	NR [11722792] (imputed)	N
736	chr8	19803083	19803084	rs6999612	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large VLDL	115,082 European ancestry individuals	NA	8p21.3		rs6999612-T	0.981904	3E-25		0.155776	[0.13-0.19] unit decrease	NR [11722792] (imputed)	N
736	chr8	19803083	19803084	rs6999612	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	8p21.3		rs6999612-T	0.981904	1E-22		0.133719	[0.11-0.16] unit increase	NR [11722792] (imputed)	N
736	chr8	19803083	19803084	rs6999612	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	8p21.3		rs6999612-T	0.981904	5E-17		0.125452	[0.096-0.155] unit decrease	NR [11722792] (imputed)	N
736	chr8	19803083	19803084	rs6999612	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in VLDL	115,082 European ancestry individuals	NA	8p21.3		rs6999612-T	0.981904	3E-22		0.147462	[0.12-0.18] unit decrease	NR [11722792] (imputed)	N
736	chr8	19803083	19803084	rs6999612	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	8p21.3		rs6999612-T	0.981909	1E-35		0.179658	[0.15-0.21] unit decrease	NR [11722792] (imputed)	N
736	chr8	19803083	19803084	rs6999612	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to monounsaturated fatty acids	115,006 European ancestry individuals	NA	8p21.3		rs6999612-T	0.981909	1E-18		0.130948	[0.1-0.16] unit increase	NR [11722792] (imputed)	N
736	chr8	19803083	19803084	rs6999612	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of monounsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	8p21.3		rs6999612-T	0.981909	2E-23		0.148434	[0.12-0.18] unit decrease	NR [11722792] (imputed)	N
736	chr8	19803083	19803084	rs6999612	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	8p21.3		rs6999612-T	0.981904	4E-8		0.0849161	[0.055-0.115] unit increase	NR [11722792] (imputed)	N
736	chr8	19803083	19803084	rs6999612	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	8p21.3		rs6999612-T	0.981902	1E-25		0.157725	[0.13-0.19] unit decrease	NR [11722792] (imputed)	N
736	chr8	19803083	19803084	rs6999612	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large VLDL	115,082 European ancestry individuals	NA	8p21.3		rs6999612-T	0.981904	6E-25		0.154569	[0.13-0.18] unit decrease	NR [11722792] (imputed)	N
736	chr8	19803083	19803084	rs6999612	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large HDL	115,082 European ancestry individuals	NA	8p21.3		rs6999612-T	0.981904	8E-11		0.0908691	[0.063-0.118] unit increase	NR [11722792] (imputed)	N
736	chr8	19803083	19803084	rs6999612	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large VLDL	115,082 European ancestry individuals	NA	8p21.3		rs6999612-T	0.981904	8E-28		0.163714	[0.13-0.19] unit decrease	NR [11722792] (imputed)	N
736	chr8	19803083	19803084	rs6999612	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large HDL	115,082 European ancestry individuals	NA	8p21.3		rs6999612-T	0.981904	2E-23		0.13659	[0.11-0.16] unit increase	NR [11722792] (imputed)	N
736	chr8	19803083	19803084	rs6999612	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	8p21.3		rs6999612-T	0.981904	2E-21		0.141352	[0.11-0.17] unit decrease	NR [11722792] (imputed)	N
736	chr8	19803083	19803084	rs6999612	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in VLDL	115,082 European ancestry individuals	NA	8p21.3		rs6999612-T	0.981904	5E-21		0.144208	[0.11-0.17] unit decrease	NR [11722792] (imputed)	N
736	chr8	19803083	19803084	rs6999612	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Monounsaturated fatty acid levels	115,006 European ancestry individuals	NA	8p21.3		rs6999612-T	0.981909	5E-14		0.115439	[0.085-0.145] unit decrease	NR [11722792] (imputed)	N
736	chr8	19803083	19803084	rs6999612	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	HDL cholesterol levels	115,082 European ancestry individuals	NA	8p21.3		rs6999612-T	0.981904	3E-27		0.150444	[0.12-0.18] unit increase	NR [11722792] (imputed)	N
736	chr8	19803083	19803084	rs6999612	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	8p21.3		rs6999612-T	0.9819	1E-10		0.088692	[0.062-0.116] unit decrease	NR [11722792] (imputed)	N
736	chr8	19803083	19803084	rs6999612	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	8p21.3		rs6999612-T	0.981904	2E-17		0.125951	[0.097-0.155] unit increase	NR [11722792] (imputed)	N
736	chr8	19803083	19803084	rs6999612	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	8p21.3		rs6999612-T	0.981904	8E-20		0.136407	[0.11-0.17] unit increase	NR [11722792] (imputed)	N
736	chr8	19803083	19803084	rs6999612	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	8p21.3		rs6999612-T	0.981904	9E-27		0.158511	[0.13-0.19] unit increase	NR [11722792] (imputed)	N
736	chr8	19803083	19803084	rs6999612	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	8p21.3		rs6999612-T	0.981904	2E-17		0.117446	[0.09-0.144] unit increase	NR [11722792] (imputed)	N
736	chr8	19803083	19803084	rs6999612	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	8p21.3		rs6999612-T	0.981904	1E-29		0.166532	[0.14-0.2] unit increase	NR [11722792] (imputed)	N
736	chr8	19803083	19803084	rs6999612	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	8p21.3		rs6999612-T	0.981904	6E-25		0.155012	[0.13-0.18] unit decrease	NR [11722792] (imputed)	N
736	chr8	19803083	19803084	rs6999612	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	8p21.3		rs6999612-T	0.981904	8E-27		0.160845	[0.13-0.19] unit decrease	NR [11722792] (imputed)	N
736	chr8	19803083	19803084	rs6999612	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	8p21.3		rs6999612-T	0.981904	5E-21		0.128315	[0.1-0.16] unit increase	NR [11722792] (imputed)	N
736	chr8	19803083	19803084	rs6999612	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	8p21.3		rs6999612-T	0.981904	2E-20		0.138757	[0.11-0.17] unit decrease	NR [11722792] (imputed)	N
736	chr8	19803083	19803084	rs6999612	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in VLDL	115,082 European ancestry individuals	NA	8p21.3		rs6999612-T	0.981904	4E-18		0.133743	[0.1-0.16] unit decrease	NR [11722792] (imputed)	N
736	chr8	19803083	19803084	rs6999612	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large VLDL particles	115,082 European ancestry individuals	NA	8p21.3		rs6999612-T	0.981904	9E-26		0.156466	[0.13-0.19] unit decrease	NR [11722792] (imputed)	N
736	chr8	19803083	19803084	rs6999612	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small VLDL particles	115,082 European ancestry individuals	NA	8p21.3		rs6999612-T	0.981904	5E-27		0.164487	[0.13-0.19] unit decrease	NR [11722792] (imputed)	N
736	chr8	19803083	19803084	rs6999612	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large VLDL particles	115,082 European ancestry individuals	NA	8p21.3		rs6999612-T	0.981904	1E-26		0.1601	[0.13-0.19] unit decrease	NR [11722792] (imputed)	N
736	chr8	19803083	19803084	rs6999612	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	8p21.3		rs6999612-T	0.981904	2E-20		0.126278	[0.1-0.153] unit increase	NR [11722792] (imputed)	N
736	chr8	19803083	19803084	rs6999612	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of chylomicrons and extremely large VLDL particles	115,082 European ancestry individuals	NA	8p21.3		rs6999612-T	0.981904	9E-20		0.135828	[0.11-0.17] unit decrease	NR [11722792] (imputed)	N
736	chr8	19803083	19803084	rs6999612	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	8p21.3		rs6999612-T	0.981904	7E-29		0.162499	[0.13-0.19] unit increase	NR [11722792] (imputed)	N
736	chr8	19803083	19803084	rs6999612	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	8p21.3		rs6999612-T	0.981904	3E-17		0.122697	[0.094-0.151] unit increase	NR [11722792] (imputed)	N
736	chr8	19803083	19803084	rs6999612	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	8p21.3		rs6999612-T	0.981904	2E-11		0.10448	[0.074-0.135] unit decrease	NR [11722792] (imputed)	N
736	chr8	19803083	19803084	rs6999612	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	8p21.3		rs6999612-T	0.981904	2E-23		0.149746	[0.12-0.18] unit increase	NR [11722792] (imputed)	N
736	chr8	19803083	19803084	rs6999612	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in IDL	115,082 European ancestry individuals	NA	8p21.3		rs6999612-T	0.981904	3E-29		0.169784	[0.14-0.2] unit increase	NR [11722792] (imputed)	N
736	chr8	19803083	19803084	rs6999612	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large VLDL	115,082 European ancestry individuals	NA	8p21.3		rs6999612-T	0.981904	3E-22		0.148409	[0.12-0.18] unit decrease	NR [11722792] (imputed)	N
736	chr8	19803083	19803084	rs6999612	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	8p21.3		rs6999612-T	0.981904	3E-13		0.101539	[0.074-0.129] unit increase	NR [11722792] (imputed)	N
736	chr8	19803083	19803084	rs6999612	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large VLDL	115,082 European ancestry individuals	NA	8p21.3		rs6999612-T	0.981904	2E-23		0.15344	[0.12-0.18] unit decrease	NR [11722792] (imputed)	N
736	chr8	19803083	19803084	rs6999612	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	8p21.3		rs6999612-T	0.981904	2E-24		0.139978	[0.11-0.17] unit increase	NR [11722792] (imputed)	N
736	chr8	19803083	19803084	rs6999612	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	8p21.3		rs6999612-T	0.981904	5E-22		0.144758	[0.12-0.17] unit decrease	NR [11722792] (imputed)	N
736	chr8	19803083	19803084	rs6999612	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	8p21.3		rs6999612-T	0.981904	3E-29		0.156661	[0.13-0.18] unit increase	NR [11722792] (imputed)	N
736	chr8	19803083	19803084	rs6999612	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	8p21.3		rs6999612-T	0.981904	5E-26		0.154813	[0.13-0.18] unit increase	NR [11722792] (imputed)	N
736	chr8	19803083	19803084	rs6999612	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	8p21.3		rs6999612-T	0.981904	6E-15		0.113921	[0.085-0.143] unit increase	NR [11722792] (imputed)	N
736	chr8	19803083	19803084	rs6999612	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	8p21.3		rs6999612-T	0.981904	7E-27		0.15845	[0.13-0.19] unit increase	NR [11722792] (imputed)	N
736	chr8	19803083	19803084	rs6999612	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	8p21.3		rs6999612-T	0.981904	9E-30		0.171102	[0.14-0.2] unit increase	NR [11722792] (imputed)	N
736	chr8	19803083	19803084	rs6999612	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	8p21.3		rs6999612-T	0.981904	4E-24		0.153642	[0.12-0.18] unit decrease	NR [11722792] (imputed)	N
736	chr8	19803083	19803084	rs6999612	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	8p21.3		rs6999612-T	0.981904	5E-12		0.0968272	[0.069-0.124] unit increase	NR [11722792] (imputed)	N
736	chr8	19803083	19803084	rs6999612	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	8p21.3		rs6999612-T	0.981904	1E-25		0.159096	[0.13-0.19] unit decrease	NR [11722792] (imputed)	N
736	chr8	19803083	19803084	rs6999612	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	8p21.3		rs6999612-T	0.981904	8E-24		0.137837	[0.11-0.16] unit increase	NR [11722792] (imputed)	N
736	chr8	19803083	19803084	rs6999612	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	8p21.3		rs6999612-T	0.981904	1E-21		0.143112	[0.11-0.17] unit decrease	NR [11722792] (imputed)	N
736	chr8	19803083	19803084	rs6999612	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for VLDL particles	115,082 European ancestry individuals	NA	8p21.3		rs6999612-T	0.981904	2E-23		0.144428	[0.12-0.17] unit decrease	NR [11722792] (imputed)	N
736	chr8	19803083	19803084	rs6999612	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	8p21.3		rs6999612-T	0.981904	1E-17		0.117576	[0.091-0.145] unit increase	NR [11722792] (imputed)	N
736	chr8	19803136	19803137	rs59811201	32226016	Hu Y	2020-03-30	PLoS Genet	Minority-centric meta-analyses of blood lipid levels identify novel loci in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Total triglycerides levels	17,563 African American individuals, 23,077 Hispanics ancestry individuals, 2,381 East Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals, 22,898 European ancestry individuals	up to 71,987 African American individuals, up to 34,899 Hispanics ancestry individuals, up to 315,133 European ancestry individuals, up to 9,593 Asian ancestry individuals, up to 94,674 European ancestry, East Asian ancestry, African American, South Asian ancestry, Hispanic individuals	8p21.3		rs59811201-?	NR	1E-10		0.109	[0.076-0.142] mg/dL increase	Affymetrix, Illumina [NR] (imputed)	N
736	chr8	19805707	19805708	rs1801177	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	8p21.3	NR	rs1801177-A	NR	3E-82		0.1729	[0.16-0.19] unit increase	Affymetrix [9000000] (imputed)	N
736	chr8	19805707	19805708	rs1801177	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	8p21.3	NR	rs1801177-A	NR	4E-106		0.2059	[0.19-0.22] unit decrease	Affymetrix [9000000] (imputed)	N
736	chr8	19805707	19805708	rs1801177	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	8p21.3	NR	rs1801177-A	NR	1E-18		0.0796	[0.062-0.097] unit increase	Affymetrix [9000000] (imputed)	N
736	chr8	19805707	19805708	rs1801177	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	8p21.3	NR	rs1801177-A	NR	1E-69		0.1663	[0.15-0.18] unit decrease	Affymetrix [9000000] (imputed)	N
736	chr8	19806630	19806631	rs7016529	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p21.3	NR	rs7016529-T	NR	4E-18		0.114	unit decrease	Affymetrix [at least 7091467] (imputed)	N
736	chr8	19806630	19806631	rs7016529	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p21.3	NR	rs7016529-T	0.983	9E-21	(EA)	0.15	unit decrease	Affymetrix [at least 7091467] (imputed)	N
736	chr8	19806630	19806631	rs7016529	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p21.3	NR	rs7016529-T	NR	1E-22		0.119	unit increase	Affymetrix [at least 7091467] (imputed)	N
736	chr8	19806630	19806631	rs7016529	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p21.3	NR	rs7016529-T	0.983	2E-25	(EA)	0.152	unit increase	Affymetrix [at least 7091467] (imputed)	N
736	chr8	19807340	19807341	rs73667470	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very small VLDL	115,082 European ancestry individuals	NA	8p21.3		rs73667470-A	0.981369	3E-10		0.0949213	[0.065-0.124] unit decrease	NR [11722792] (imputed)	N
736	chr8	19807340	19807341	rs73667470	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	8p21.3		rs73667470-A	0.981369	6E-10		0.0950155	[0.065-0.125] unit decrease	NR [11722792] (imputed)	N
736	chr8	19807340	19807341	rs73667470	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	8p21.3		rs73667470-A	0.981369	3E-10		0.0968467	[0.067-0.127] unit decrease	NR [11722792] (imputed)	N
736	chr8	19807340	19807341	rs73667470	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small LDL particles	115,082 European ancestry individuals	NA	8p21.3		rs73667470-A	0.981369	3E-9		0.0916368	[0.061-0.122] unit decrease	NR [11722792] (imputed)	N
736	chr8	19807340	19807341	rs73667470	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in VLDL	115,082 European ancestry individuals	NA	8p21.3		rs73667470-A	0.981369	5E-11		0.101194	[0.071-0.131] unit decrease	NR [11722792] (imputed)	N
736	chr8	19807462	19807462	rs138942164	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large HDL	115,082 European ancestry individuals	NA	8p21.3		rs138942164-G	0.980872	3E-13		0.109531	[0.08-0.139] unit decrease	NR [11722792] (imputed)	N
736	chr8	19807462	19807462	rs138942164	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	8p21.3		rs138942164-G	0.980872	2E-9		0.0924292	[0.062-0.123] unit increase	NR [11722792] (imputed)	N
736	chr8	19810786	19810787	rs343	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	8p21.3	LPL	rs343-C	0.916869	4E-334		0.141358	[0.13-0.15] unit increase	Affymetrix [NR] (imputed)	N
736	chr8	19810786	19810787	rs343	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	8p21.3	LPL	rs343-C	0.916929	8E-326		0.133707	[0.13-0.14] unit decrease	Affymetrix [NR] (imputed)	N
736	chr8	19811732	19811733	rs118204057	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Triglyceride levels	437,532 European ancestry individuals	NA	8p21.3		rs118204057-?	NR	2E-44		0.705786	[0.61-0.81] unit increase	NR [9800000] (imputed)	N
736	chr8	19811732	19811733	rs118204057	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	HDL cholesterol levels	400,754 European ancestry individuals	NA	8p21.3		rs118204057-?	NR	2E-77		0.919948	[0.82-1.02] unit decrease	NR [9800000] (imputed)	N
736	chr8	19811732	19811733	rs118204057	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Apolipoprotein A1 levels	398,508 European ancestry individuals	NA	8p21.3		rs118204057-?	NR	9E-51		0.785987	[0.68-0.89] unit decrease	NR [9800000] (imputed)	N
736	chr8	19811732	19811733	rs118204057	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	8p21.3	NR	rs118204057-A	NR	3E-36		0.6898	[0.58-0.8] unit increase	Affymetrix [9000000] (imputed)	N
736	chr8	19811732	19811733	rs118204057	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	8p21.3	NR	rs118204057-A	NR	9E-57		0.9078	[0.8-1.02] unit decrease	Affymetrix [9000000] (imputed)	N
736	chr8	19811732	19811733	rs118204057	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	8p21.3	NR	rs118204057-A	NR	6E-39		0.7479	[0.64-0.86] unit decrease	Affymetrix [9000000] (imputed)	N
736	chr8	19812251	19812252	rs258	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x short total sleep time interaction (2df test)	2,990 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,300 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, at least 11,842 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,350 European ancestry controls, 4,047 Hispanic/Latino controls	at least 220 African American short sleepers, 326 East Asian ancestry short sleepers, up to 5,288 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 1,292 East Asian ancestry controls, up to 20,844 European ancestry controls, 10,062 Hispanic controls	8p21.3	LPL	rs258-?	NR	8E-17		0.0162	[0.012-0.02] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
736	chr8	19813179	19813180	rs264	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	8p21.3	LPL	rs264-A	0.1412	6E-12		0.0632	[0.045-0.081] unit decrease	NR [8041861] (imputed)	N
736	chr8	19813179	19813180	rs264	24262325	Dichgans M	2013-11-21	Stroke	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Coronary artery disease	33,398 cases, 75,726 controls	NA	8p21.3	LPL	rs264-?	NR	3E-7		1.1111	[1.06-1.15]	Illumina [575000] (imputed)	N
736	chr8	19813528	19813529	rs268	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	8p21.3	NR	rs268-G	NR	6E-166		0.2466	[0.23-0.26] unit increase	Affymetrix [9000000] (imputed)	N
736	chr8	19813528	19813529	rs268	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	8p21.3	NR	rs268-G	NR	7E-220		0.2972	[0.28-0.32] unit decrease	Affymetrix [9000000] (imputed)	N
736	chr8	19813528	19813529	rs268	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	8p21.3	NR	rs268-G	NR	8E-26		0.0948	[0.077-0.112] unit increase	Affymetrix [9000000] (imputed)	N
736	chr8	19813528	19813529	rs268	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	8p21.3	NR	rs268-G	NR	6E-145		0.2412	[0.22-0.26] unit decrease	Affymetrix [9000000] (imputed)	N
736	chr8	19813528	19813529	rs268	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	8p21.3	LPL	rs268-G	0.018266	3E-17		0.07029825	[0.054-0.087] unit decrease	Affymetrix [93095623] (imputed)	N
736	chr8	19813528	19813529	rs268	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	8p21.3	LPL	rs268-G	0.01823	6E-16		0.06842715	[0.052-0.085] unit increase	Affymetrix [93095623] (imputed)	N
736	chr8	19813528	19813529	rs268	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	8p21.3	LPL	rs268-G	0.018306	7E-30		0.0942276	[0.078-0.11] unit decrease	Affymetrix [93095623] (imputed)	N
736	chr8	19813528	19813529	rs268	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls	NA	8p21.3	LPL	rs268-G	0.0185977	5E-10		0.12852937	[0.088-0.169] unit increase	Affymetrix [7288503] (imputed)	N
736	chr8	19813528	19813529	rs268	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	Triglyceride levels	up to 23,508 African ancestry individuals, 4,649 Asian ancestry individuals, up to 77,047 European ancestry individuals, 6,705 Hispanic individuals	NA	8p21.3		rs268-A	0.9793	5E-16	(EA)	0.0939	[0.071-0.117] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
736	chr8	19813528	19813529	rs268	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	HDL cholesterol levels	up to 23,761 African ancestry individuals, 13,171 Asian ancestry individuals, up to 90,272 European ancestry individuals, 6,620 Hispanic individuals	NA	8p21.3		rs268-A	0.9796	3E-20	(EA)	0.0505	[0.04-0.061] unit increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
736	chr8	19813528	19813529	rs268	24507774	Peloso GM	2014-02-01	Am J Hum Genet	Association of low-frequency and rare coding-sequence variants with blood lipids and coronary heart disease in 56,000 whites and blacks.	Triglycerides	up to 42,208 European ancestry individuals, up to 14,330 African ancestry individuals	NA	8p21.3	LPL	rs268-?	0.0176	1E-22	(EA)	0.14	unit increase	Illumina [247644]	N
736	chr8	19813528	19813529	rs268	24507774	Peloso GM	2014-02-01	Am J Hum Genet	Association of low-frequency and rare coding-sequence variants with blood lipids and coronary heart disease in 56,000 whites and blacks.	HDL cholesterol	up to 42,208 European ancestry individuals, up to 14,330 African ancestry individuals	NA	8p21.3	LPL	rs268-?	0.0178	2E-19	(EA)	3.0	mg/dl decrease	Illumina [247644]	N
736	chr8	19813528	19813529	rs268	22399527	Kristiansson K	2012-03-07	Circ Cardiovasc Genet	Genome-wide screen for metabolic syndrome susceptibility Loci reveals strong lipid gene contribution but no evidence for common genetic basis for clustering of metabolic syndrome traits.	Metabolic syndrome	2,637 European ancestry cases, 7,927 European ancestry controls	NA	8p21.3	LPL	rs268-G	0.02	2E-12	(HDL)	0.38	[NR] mmol/l decrease	Illumina [1257079] (imputed)	N
736	chr8	19813593	19813594	rs1372264561	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	HDL cholesterol levels	400,754 European ancestry individuals	NA	8p21.3		rs1372264561-?	NR	1E-15		1.05995	[0.8-1.32] unit decrease	NR [9800000] (imputed)	N
736	chr8	19813701	19813702	rs271	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_36:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs271-A	NR	4E-10		0.103648	[0.071-0.136] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19813701	19813702	rs271	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_36:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs271-A	NR	1E-10		0.10403	[0.072-0.136] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19815097	19815098	rs283	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x short total sleep time interaction (2df test)	3,007 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,474 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, up to 11,901 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,567 European ancestry controls, 4,047 Hispanic/Latino controls	up to 221 African American short sleepers, 629 East Asian ancestry short sleepers, up to 9,585 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 2,504 East Asian ancestry controls, up to 38,027 European ancestry controls, 10,061 Hispanic controls	8p21.3	LPL	rs283-?	NR	7E-13		0.008472	[0.006-0.0109] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
736	chr8	19815097	19815098	rs283	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x long total sleep time interaction (2df test)	2,933 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, up to 7,870 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,975 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 32,171 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 616 East Asian ancestry long sleepers, up to 9,486 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 929 African American controls, 2,517 East Asian ancestry controls, up to 38,126 European ancestry controls, 10,063 Hispanic controls	8p21.3	LPL	rs283-?	NR	7E-12		0.008617	[0.0062-0.011] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
736	chr8	19815255	19815256	rs286	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total cholesterol in medium HDL	4,734 individuals	NA	8p21.3		rs286-T	0.091241416	3E-12		0.253891	[0.18-0.33] mmol/l increase	Illumina [7701709] (imputed)	N
736	chr8	19815255	19815256	rs286	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting cholesterol esters in medium HDL	4,734 individuals	NA	8p21.3		rs286-T	0.091241416	1E-12		0.25829	[0.19-0.33] mmol/l increase	Illumina [7701709] (imputed)	N
736	chr8	19815255	19815256	rs286	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	8p21.3		rs286-?	NR	4E-8				NR [~ 8900000] (imputed)	N
736	chr8	19815555	19815556	rs287	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total lipids in very small VLDL	4,348 individuals	NA	8p21.3		rs287-G	0.259944329	3E-8		0.136962	[0.088-0.185] mmol/l decrease	Illumina [7701709] (imputed)	N
736	chr8	19815555	19815556	rs287	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total lipids in large HDL	4,348 individuals	NA	8p21.3		rs287-G	0.264826141	2E-13		0.187787	[0.14-0.24] mmol/l increase	Illumina [7701709] (imputed)	N
736	chr8	19815555	19815556	rs287	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total cholesterol in large HDL	4,348 individuals	NA	8p21.3		rs287-G	0.264826141	6E-14		0.191153	[0.14-0.24] mmol/l increase	Illumina [7701709] (imputed)	N
736	chr8	19815555	19815556	rs287	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial phospholipid levels in large HDL	4,348 individuals	NA	8p21.3		rs287-G	0.264826141	3E-13		0.18603	[0.14-0.24] mmol/l increase	Illumina [7701709] (imputed)	N
736	chr8	19815555	19815556	rs287	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial large HDL particle concentration	4,348 individuals	NA	8p21.3		rs287-G	0.264826141	2E-13		0.186751	[0.14-0.24] mmol/l increase	Illumina [7701709] (imputed)	N
736	chr8	19815555	19815556	rs287	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial free cholesterol in large HDL	4,348 individuals	NA	8p21.3		rs287-G	0.264826141	5E-14		0.191966	[0.14-0.24] mmol/l increase	Illumina [7701709] (imputed)	N
736	chr8	19815555	19815556	rs287	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial cholesterol esters in large HDL	4,348 individuals	NA	8p21.3		rs287-G	0.264826141	6E-14		0.191038	[0.14-0.24] mmol/l increase	Illumina [7701709] (imputed)	N
736	chr8	19815555	19815556	rs287	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total lipids in large HDL	4,734 individuals	NA	8p21.3		rs287-G	0.263755855	5E-13		0.173903	[0.13-0.22] mmol/l increase	Illumina [7701709] (imputed)	N
736	chr8	19815555	19815556	rs287	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total cholesterol in large HDL	4,734 individuals	NA	8p21.3		rs287-G	0.263755855	1E-13		0.178737	[0.13-0.23] mmol/l increase	Illumina [7701709] (imputed)	N
736	chr8	19815555	19815556	rs287	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting phospholipid levels in large HDL	4,734 individuals	NA	8p21.3		rs287-G	0.263755855	1E-12		0.171442	[0.12-0.22] mmol/l increase	Illumina [7701709] (imputed)	N
736	chr8	19815555	19815556	rs287	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting large HDL particle concentration	4,734 individuals	NA	8p21.3		rs287-G	0.263755855	8E-13		0.172545	[0.13-0.22] mmol/l increase	Illumina [7701709] (imputed)	N
736	chr8	19815555	19815556	rs287	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting free cholesterol in very large HDL	4,734 individuals	NA	8p21.3		rs287-G	0.261861888	1E-9		0.146342	[0.099-0.193] mmol/l increase	Illumina [7701709] (imputed)	N
736	chr8	19815555	19815556	rs287	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting free cholesterol in large HDL	4,734 individuals	NA	8p21.3		rs287-G	0.263755855	7E-14		0.179991	[0.13-0.23] mmol/l increase	Illumina [7701709] (imputed)	N
736	chr8	19815555	19815556	rs287	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting cholesterol esters in large HDL	4,734 individuals	NA	8p21.3		rs287-G	0.263755855	1E-13		0.178459	[0.13-0.23] mmol/l increase	Illumina [7701709] (imputed)	N
736	chr8	19815555	19815556	rs287	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	8p21.3	LPL	rs287-G	NR	9E-136	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
736	chr8	19815555	19815556	rs287	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	8p21.3	LPL	rs287-G	NR	9E-11	(AA)			Affymetrix, Illumina [NR] (imputed)	N
736	chr8	19815555	19815556	rs287	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	8p21.3	LPL	rs287-G	NR	5E-16	(Hispanic)			Affymetrix, Illumina [NR] (imputed)	N
736	chr8	19815555	19815556	rs287	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	8p21.3	LPL	rs287-G	NR	4E-200				Affymetrix, Illumina [NR] (imputed)	N
736	chr8	19815555	19815556	rs287	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	8p21.3	LPL	rs287-G	NR	2E-198	(EA)			Affymetrix, Illumina [NR] (imputed)	N
736	chr8	19815555	19815556	rs287	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	8p21.3	LPL	rs287-G	NR	9E-203				Affymetrix, Illumina [NR] (imputed)	N
736	chr8	19815555	19815556	rs287	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	8p21.3	LPL	rs287-G	NR	5E-137	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
736	chr8	19815555	19815556	rs287	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	8p21.3	LPL	rs287-G	NR	5E-13	(AA)			Affymetrix, Illumina [NR] (imputed)	N
736	chr8	19815555	19815556	rs287	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	8p21.3	LPL	rs287-G	NR	4E-16	(Hispanic)			Affymetrix, Illumina [NR] (imputed)	N
736	chr8	19815555	19815556	rs287	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	8p21.3	LPL	rs287-G	NR	1E-215	(EA)			Affymetrix, Illumina [NR] (imputed)	N
736	chr8	19815555	19815556	rs287	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	8p21.3	LPL	rs287-G	NR	9E-97	(EA)	0.061	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
736	chr8	19815555	19815556	rs287	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	8p21.3	LPL	rs287-G	NR	4E-15	(Hispanic)	0.06	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
736	chr8	19815555	19815556	rs287	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	8p21.3	LPL	rs287-G	NR	3E-92	(Asian)	0.066	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
736	chr8	19815555	19815556	rs287	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	8p21.3	LPL	rs287-G	NR	3E-195		0.06	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
736	chr8	19815555	19815556	rs287	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	8p21.3	LPL	rs287-G	NR	1E-8	(AA)	0.032	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
736	chr8	19815555	19815556	rs287	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	8p21.3	LPL	rs287-G	NR	6E-59	(EA)	0.065	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
736	chr8	19815555	19815556	rs287	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	8p21.3	LPL	rs287-G	NR	6E-158		0.063	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
736	chr8	19815555	19815556	rs287	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	8p21.3	LPL	rs287-G	NR	3E-91	(Asian)	0.068	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
736	chr8	19815555	19815556	rs287	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	8p21.3	LPL	rs287-G	NR	3E-9	(Hispanic)	0.056	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
736	chr8	19815555	19815556	rs287	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	8p21.3	LPL	rs287-G	NR	2E-10	(AA)	0.044	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
736	chr8	19815555	19815556	rs287	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	8p21.3	LPL	rs287-G	NR	8E-216	(EA)			Affymetrix, Illumina [NR] (imputed)	N
736	chr8	19815555	19815556	rs287	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	8p21.3	LPL	rs287-G	NR	7E-12	(AA)			Affymetrix, Illumina [NR] (imputed)	N
736	chr8	19815555	19815556	rs287	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	8p21.3	LPL	rs287-G	NR	6E-299				Affymetrix, Illumina [NR] (imputed)	N
736	chr8	19815555	19815556	rs287	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	8p21.3	LPL	rs287-G	NR	3E-69	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
736	chr8	19815555	19815556	rs287	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	8p21.3	LPL	rs287-G	NR	1E-16	(Hispanic)			Affymetrix, Illumina [NR] (imputed)	N
736	chr8	19815555	19815556	rs287	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	8p21.3	LPL	rs287-G	NR	3E-225	(EA)			Affymetrix, Illumina [NR] (imputed)	N
736	chr8	19815555	19815556	rs287	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	8p21.3	LPL	rs287-G	NR	3E-13	(AA)			Affymetrix, Illumina [NR] (imputed)	N
736	chr8	19815555	19815556	rs287	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	8p21.3	LPL	rs287-G	NR	2E-79	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
736	chr8	19815555	19815556	rs287	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	8p21.3	LPL	rs287-G	NR	2E-17	(Hispanic)			Affymetrix, Illumina [NR] (imputed)	N
736	chr8	19815555	19815556	rs287	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	8p21.3	LPL	rs287-G	NR	8E-16	(Hispanic)	0.029	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
736	chr8	19815555	19815556	rs287	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	8p21.3	LPL	rs287-G	NR	8E-10	(AA)	0.019	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
736	chr8	19815555	19815556	rs287	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	8p21.3	LPL	rs287-G	NR	5E-46	(Asian)	0.022	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
736	chr8	19815555	19815556	rs287	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	8p21.3	LPL	rs287-G	NR	4E-166		0.025	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
736	chr8	19815555	19815556	rs287	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	8p21.3	LPL	rs287-G	NR	4E-105	(EA)	0.029	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
736	chr8	19815555	19815556	rs287	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	8p21.3	LPL	rs287-G	NR	4E-50	(Asian)	0.0238	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
736	chr8	19815555	19815556	rs287	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	8p21.3	LPL	rs287-G	NR	4E-131		0.0265	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
736	chr8	19815555	19815556	rs287	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	8p21.3	LPL	rs287-G	NR	2E-12	(HIspanic)	0.03143	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
736	chr8	19815555	19815556	rs287	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	8p21.3	LPL	rs287-G	NR	1E-65	(EA)	0.0309	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
736	chr8	19815555	19815556	rs287	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	8p21.3	LPL	rs287-G	NR	1E-10	(AA)	0.02344	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
736	chr8	19815851	19815852	rs291	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8p21.3	INTS10	rs291-?	NR	3E-6	(DAG 36:1)	0.19770579	[0.12-0.28] unit decrease	Affymetrix [at least 2500000] (imputed)	N
736	chr8	19816237	19816238	rs295	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial very small VLDL particle concentration	4,348 individuals	NA	8p21.3		rs295-C	0.248770646	1E-9		0.151164	[0.1-0.2] mmol/l decrease	Illumina [7701709] (imputed)	N
736	chr8	19816237	19816238	rs295	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial triglycerides levels in small VLDL	4,348 individuals	NA	8p21.3		rs295-C	0.248713431	2E-19		0.224693	[0.18-0.27] mmol/l decrease	Illumina [7701709] (imputed)	N
736	chr8	19816237	19816238	rs295	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial triglycerides levels in medium VLDL	4,348 individuals	NA	8p21.3		rs295-C	0.248713431	2E-18		0.218673	[0.17-0.27] mmol/l decrease	Illumina [7701709] (imputed)	N
736	chr8	19816237	19816238	rs295	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial triglycerides in VLDL	4,348 individuals	NA	8p21.3		rs295-C	0.248713431	4E-18		0.216502	[0.17-0.27] mmol/l decrease	Illumina [7701709] (imputed)	N
736	chr8	19816237	19816238	rs295	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total lipids in small VLDL	4,348 individuals	NA	8p21.3		rs295-C	0.248713431	3E-19		0.223406	[0.17-0.27] mmol/l decrease	Illumina [7701709] (imputed)	N
736	chr8	19816237	19816238	rs295	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total lipids in medium VLDL	4,348 individuals	NA	8p21.3		rs295-C	0.248713431	2E-18		0.217799	[0.17-0.27] mmol/l decrease	Illumina [7701709] (imputed)	N
736	chr8	19816237	19816238	rs295	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total cholesterol in small VLDL	4,348 individuals	NA	8p21.3		rs295-C	0.248713431	1E-16		0.205866	[0.16-0.25] mmol/l decrease	Illumina [7701709] (imputed)	N
736	chr8	19816237	19816238	rs295	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total cholesterol in medium VLDL	4,348 individuals	NA	8p21.3		rs295-C	0.248713431	4E-18		0.216396	[0.17-0.27] mmol/l decrease	Illumina [7701709] (imputed)	N
736	chr8	19816237	19816238	rs295	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total cholesterol in VLDL	4,348 individuals	NA	8p21.3		rs295-C	0.248713431	2E-17		0.211144	[0.16-0.26] mmol/l decrease	Illumina [7701709] (imputed)	N
736	chr8	19816237	19816238	rs295	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial small VLDL particle concentration	4,348 individuals	NA	8p21.3		rs295-C	0.248713431	2E-19		0.224341	[0.18-0.27] mmol/l decrease	Illumina [7701709] (imputed)	N
736	chr8	19816237	19816238	rs295	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial phospholipid levels in small VLDL	4,348 individuals	NA	8p21.3		rs295-C	0.248713431	6E-18		0.215214	[0.17-0.26] mmol/l decrease	Illumina [7701709] (imputed)	N
736	chr8	19816237	19816238	rs295	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial phospholipid levels in medium VLDL	4,348 individuals	NA	8p21.3		rs295-C	0.248713431	3E-18		0.216901	[0.17-0.27] mmol/l decrease	Illumina [7701709] (imputed)	N
736	chr8	19816237	19816238	rs295	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial medium VLDL particle concentration	4,348 individuals	NA	8p21.3		rs295-C	0.248713431	2E-18		0.218094	[0.17-0.27] mmol/l decrease	Illumina [7701709] (imputed)	N
736	chr8	19816237	19816238	rs295	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial glycoprotein acetyls (mainly a1-acid glycoprotein)	4,348 individuals	NA	8p21.3		rs295-C	0.248713431	2E-16		0.20523	[0.16-0.25] mmol/l decrease	Illumina [7701709] (imputed)	N
736	chr8	19816237	19816238	rs295	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial free cholesterol in small VLDL	4,348 individuals	NA	8p21.3		rs295-C	0.248713431	2E-18		0.218389	[0.17-0.27] mmol/l decrease	Illumina [7701709] (imputed)	N
736	chr8	19816237	19816238	rs295	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial free cholesterol in medium VLDL	4,348 individuals	NA	8p21.3		rs295-C	0.248713431	6E-18		0.215153	[0.17-0.26] mmol/l decrease	Illumina [7701709] (imputed)	N
736	chr8	19816237	19816238	rs295	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial cholesterol esters in small VLDL	4,348 individuals	NA	8p21.3		rs295-C	0.248713431	1E-13		0.185449	[0.14-0.23] mmol/l decrease	Illumina [7701709] (imputed)	N
736	chr8	19816237	19816238	rs295	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial cholesterol esters in medium VLDL	4,348 individuals	NA	8p21.3		rs295-C	0.248713431	1E-17		0.212493	[0.16-0.26] mmol/l decrease	Illumina [7701709] (imputed)	N
736	chr8	19816237	19816238	rs295	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial apolipoprotein B	4,348 individuals	NA	8p21.3		rs295-C	0.248713431	3E-12		0.174553	[0.13-0.22] mmol/l decrease	Illumina [7701709] (imputed)	N
736	chr8	19816237	19816238	rs295	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_53:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs295-C	NR	2E-10		0.10693	[0.074-0.14] unit decrease	Affymetrix [87696910] (imputed)	N
736	chr8	19816237	19816238	rs295	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_52:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs295-C	NR	8E-11		0.109172	[0.076-0.142] unit decrease	Affymetrix [87696910] (imputed)	N
736	chr8	19816237	19816238	rs295	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_51:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs295-C	NR	2E-10		0.105509	[0.073-0.138] unit decrease	Affymetrix [87696910] (imputed)	N
736	chr8	19816237	19816238	rs295	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_38:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs295-C	NR	2E-11		0.0909969	[0.065-0.117] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19816237	19816238	rs295	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:1_[M+H]1+/Phosphatidylethanolamine_37:1_[M+H]1+/Phosphatidate_39:2_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs295-C	NR	4E-11		0.0891144	[0.063-0.116] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19816237	19816238	rs295	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:0_[M+H]1+/Phosphatidylethanolamine_37:0_[M+H]1+/Phosphatidate_39:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs295-C	NR	4E-12		0.0932903	[0.067-0.12] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19816237	19816238	rs295	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_34:1_[M+H]1+/Phosphatidylcholine-P_34:0_[M+H]1+/Phosphatidylethanolamine-O_37:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs295-C	NR	6E-11		0.0859523	[0.06-0.112] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19816237	19816238	rs295	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_32:1_[M+H]1+/Phosphatidylcholine-P_32:0_[M+H]1+/Phosphatidylethanolamine-O_35:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs295-C	NR	3E-11		0.0906552	[0.064-0.117] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19816237	19816238	rs295	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_36:3_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs295-C	NR	5E-13		0.0887832	[0.065-0.113] unit decrease	Affymetrix [87696910] (imputed)	N
736	chr8	19816237	19816238	rs295	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_36:2_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs295-C	NR	1E-10		0.0779919	[0.054-0.102] unit decrease	Affymetrix [87696910] (imputed)	N
736	chr8	19816237	19816238	rs295	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_34:2_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs295-C	NR	7E-12		0.0825786	[0.059-0.106] unit decrease	Affymetrix [87696910] (imputed)	N
736	chr8	19816237	19816238	rs295	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	8p21.3	NR	rs295-C	0.235064	1E-11		0.015869	[0.011-0.02] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
736	chr8	19816237	19816238	rs295	21386085	Kraja AT	2011-03-08	Diabetes	A bivariate genome-wide approach to metabolic syndrome: STAMPEED consortium.	Metabolic syndrome	22,161 European ancestry individuals	NA	8p21.3	LPL	rs295-A	NR	2E-9		0.17	[0.11-0.23] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
736	chr8	19816933	19816934	rs301	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial phospholipid levels in very large HDL	4,348 individuals	NA	8p21.3		rs301-C	0.254933687	7E-12		0.174087	[0.12-0.22] mmol/l increase	Illumina [7701709] (imputed)	N
736	chr8	19816933	19816934	rs301	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial mean diameter of HDL particles	4,348 individuals	NA	8p21.3		rs301-C	0.250662144	3E-16		0.203527	[0.15-0.25] mmol/l increase	Illumina [7701709] (imputed)	N
736	chr8	19816933	19816934	rs301	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial isoleucine	4,348 individuals	NA	8p21.3		rs301-C	0.250777497	7E-10		0.153521	[0.1-0.2] mmol/l decrease	Illumina [7701709] (imputed)	N
736	chr8	19816933	19816934	rs301	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting mean diameter of HDL particles	4,734 individuals	NA	8p21.3		rs301-C	0.249841149	2E-16		0.195779	[0.15-0.24] mmol/l increase	Illumina [7701709] (imputed)	N
736	chr8	19816933	19816934	rs301	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_52:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs301-C	NR	1E-10		0.108393	[0.075-0.141] unit decrease	Affymetrix [87696910] (imputed)	N
736	chr8	19816933	19816934	rs301	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_38:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs301-C	NR	2E-11		0.0909001	[0.064-0.117] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19816933	19816934	rs301	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:1_[M+H]1+/Phosphatidylethanolamine_37:1_[M+H]1+/Phosphatidate_39:2_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs301-C	NR	7E-11		0.0881648	[0.062-0.115] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19816933	19816934	rs301	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:0_[M+H]1+/Phosphatidylethanolamine_37:0_[M+H]1+/Phosphatidate_39:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs301-C	NR	1E-11		0.0917948	[0.065-0.118] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19816933	19816934	rs301	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_34:1_[M+H]1+/Phosphatidylcholine-P_34:0_[M+H]1+/Phosphatidylethanolamine-O_37:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs301-C	NR	1E-10		0.0851204	[0.059-0.111] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19816933	19816934	rs301	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_32:1_[M+H]1+/Phosphatidylcholine-P_32:0_[M+H]1+/Phosphatidylethanolamine-O_35:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs301-C	NR	6E-11		0.0896516	[0.063-0.117] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19816933	19816934	rs301	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_36:3_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs301-C	NR	7E-13		0.0882169	[0.064-0.112] unit decrease	Affymetrix [87696910] (imputed)	N
736	chr8	19816933	19816934	rs301	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_36:2_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs301-C	NR	2E-10		0.0770772	[0.053-0.101] unit decrease	Affymetrix [87696910] (imputed)	N
736	chr8	19816933	19816934	rs301	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_34:2_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs301-C	NR	1E-11		0.081611	[0.058-0.105] unit decrease	Affymetrix [87696910] (imputed)	N
736	chr8	19816933	19816934	rs301	21386085	Kraja AT	2011-03-08	Diabetes	A bivariate genome-wide approach to metabolic syndrome: STAMPEED consortium.	Metabolic syndrome (bivariate traits)	22,161 European ancestry individuals	NA	8p21.3	LPL	rs301-C	NR	3E-11	(HDLC-WC)	0.22	[0.16-0.28] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
736	chr8	19817360	19817361	rs304	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total cholesterol in HDL	4,348 individuals	NA	8p21.3		rs304-G	0.248567847	6E-17		0.207941	[0.16-0.26] mmol/l increase	Illumina [7701709] (imputed)	N
736	chr8	19817360	19817361	rs304	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total cholesterol in HDL2	4,734 individuals	NA	8p21.3		rs304-G	0.248506463	1E-14		0.184202	[0.14-0.23] mmol/l increase	Illumina [7701709] (imputed)	N
736	chr8	19817360	19817361	rs304	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total cholesterol in HDL	4,734 individuals	NA	8p21.3		rs304-G	0.247824673	1E-14		0.183513	[0.14-0.23] mmol/l increase	Illumina [7701709] (imputed)	N
736	chr8	19817400	19817401	rs305	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting very large HDL particle concentration	4,734 individuals	NA	8p21.3		rs305-G	0.250483173	5E-10		0.1509	[0.1-0.2] mmol/l increase	Illumina [7701709] (imputed)	N
736	chr8	19817400	19817401	rs305	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total lipids in very large HDL	4,734 individuals	NA	8p21.3		rs305-G	0.250483173	4E-10		0.151063	[0.1-0.2] mmol/l increase	Illumina [7701709] (imputed)	N
736	chr8	19817400	19817401	rs305	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting phospholipid levels in very large HDL	4,734 individuals	NA	8p21.3		rs305-G	0.250483173	1E-13		0.180005	[0.13-0.23] mmol/l increase	Illumina [7701709] (imputed)	N
736	chr8	19817475	19817476	rs308	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	8p21.3	LPL	rs308-T	0.979403	7E-115		0.159426	[0.15-0.17] unit increase	Affymetrix [NR] (imputed)	N
736	chr8	19817475	19817476	rs308	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	8p21.3	LPL	rs308-T	0.979362	1E-79		0.126438	[0.11-0.14] unit decrease	Affymetrix [NR] (imputed)	N
736	chr8	19818772	19818773	rs117026536	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	8p21.3		rs117026536-G	0.900082	7E-150		0.169384	[0.16-0.18] unit increase	NR [11722792] (imputed)	N
736	chr8	19818772	19818773	rs117026536	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	8p21.3		rs117026536-G	0.900445	2E-51		0.100719	[0.088-0.114] unit increase	NR [11722792] (imputed)	N
736	chr8	19818772	19818773	rs117026536	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	8p21.3		rs117026536-G	0.900082	6E-126		0.158222	[0.15-0.17] unit increase	NR [11722792] (imputed)	N
736	chr8	19818772	19818773	rs117026536	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	8p21.3		rs117026536-G	0.900082	2E-125		0.154417	[0.14-0.17] unit increase	NR [11722792] (imputed)	N
736	chr8	19818772	19818773	rs117026536	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	8p21.3		rs117026536-G	0.900082	6E-88		0.13383	[0.12-0.15] unit increase	NR [11722792] (imputed)	N
736	chr8	19818772	19818773	rs117026536	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	8p21.3		rs117026536-G	0.900082	3E-95		0.138314	[0.13-0.15] unit increase	NR [11722792] (imputed)	N
736	chr8	19818772	19818773	rs117026536	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	8p21.3		rs117026536-G	0.900082	4E-156		0.175381	[0.16-0.19] unit increase	NR [11722792] (imputed)	N
736	chr8	19818772	19818773	rs117026536	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in IDL	115,082 European ancestry individuals	NA	8p21.3		rs117026536-G	0.900082	3E-16		0.0543972	[0.041-0.067] unit decrease	NR [11722792] (imputed)	N
736	chr8	19818772	19818773	rs117026536	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total esterified cholesterol levels	115,082 European ancestry individuals	NA	8p21.3		rs117026536-G	0.900082	1E-18		0.058638	[0.046-0.072] unit decrease	NR [11722792] (imputed)	N
736	chr8	19818772	19818773	rs117026536	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Sphingomyelin levels	115,006 European ancestry individuals	NA	8p21.3		rs117026536-G	0.900107	2E-42		0.0876851	[0.075-0.1] unit decrease	NR [11722792] (imputed)	N
736	chr8	19818772	19818773	rs117026536	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	8p21.3		rs117026536-G	0.900107	3E-95		0.136715	[0.12-0.15] unit decrease	NR [11722792] (imputed)	N
736	chr8	19818772	19818773	rs117026536	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to monounsaturated fatty acids	115,006 European ancestry individuals	NA	8p21.3		rs117026536-G	0.900107	4E-151		0.172274	[0.16-0.19] unit decrease	NR [11722792] (imputed)	N
736	chr8	19818772	19818773	rs117026536	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of monounsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	8p21.3		rs117026536-G	0.900107	1E-179		0.188107	[0.18-0.2] unit increase	NR [11722792] (imputed)	N
736	chr8	19818772	19818773	rs117026536	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	8p21.3		rs117026536-G	0.900082	2E-169		0.181472	[0.17-0.19] unit decrease	NR [11722792] (imputed)	N
736	chr8	19818772	19818773	rs117026536	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	8p21.3		rs117026536-G	0.900082	3E-62		0.109926	[0.097-0.123] unit decrease	NR [11722792] (imputed)	N
736	chr8	19818772	19818773	rs117026536	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	8p21.3		rs117026536-G	0.900082	3E-140		0.164385	[0.15-0.18] unit increase	NR [11722792] (imputed)	N
736	chr8	19818772	19818773	rs117026536	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	8p21.3		rs117026536-G	0.900082	8E-18		0.0571706	[0.044-0.07] unit increase	NR [11722792] (imputed)	N
736	chr8	19818772	19818773	rs117026536	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycoprotein acetyls levels	115,082 European ancestry individuals	NA	8p21.3		rs117026536-G	0.900082	2E-38		0.0881344	[0.075-0.101] unit increase	NR [11722792] (imputed)	N
736	chr8	19818772	19818773	rs117026536	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	8p21.3		rs117026536-G	0.900445	3E-34		0.0814605	[0.068-0.095] unit decrease	NR [11722792] (imputed)	N
736	chr8	19818772	19818773	rs117026536	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	8p21.3		rs117026536-G	0.900082	2E-168		0.180646	[0.17-0.19] unit decrease	NR [11722792] (imputed)	N
736	chr8	19818772	19818773	rs117026536	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	8p21.3		rs117026536-G	0.900082	4E-9		0.0383796	[0.026-0.051] unit decrease	NR [11722792] (imputed)	N
736	chr8	19818772	19818773	rs117026536	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	8p21.3		rs117026536-G	0.900082	8E-94		0.134425	[0.12-0.15] unit decrease	NR [11722792] (imputed)	N
736	chr8	19818772	19818773	rs117026536	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	8p21.3		rs117026536-G	0.900082	5E-117		0.140145	[0.13-0.15] unit decrease	NR [11722792] (imputed)	N
736	chr8	19818772	19818773	rs117026536	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	8p21.3		rs117026536-G	0.900082	5E-199		0.196136	[0.18-0.21] unit decrease	NR [11722792] (imputed)	N
736	chr8	19818772	19818773	rs117026536	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	8p21.3		rs117026536-G	0.900082	4E-47		0.0924967	[0.08-0.105] unit decrease	NR [11722792] (imputed)	N
736	chr8	19818772	19818773	rs117026536	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large LDL	115,082 European ancestry individuals	NA	8p21.3		rs117026536-G	0.900082	1E-24		0.0692146	[0.056-0.082] unit decrease	NR [11722792] (imputed)	N
736	chr8	19818772	19818773	rs117026536	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in IDL	115,082 European ancestry individuals	NA	8p21.3		rs117026536-G	0.900082	2E-31		0.0776574	[0.065-0.091] unit decrease	NR [11722792] (imputed)	N
736	chr8	19818772	19818773	rs117026536	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Docosahexaenoic acid levels	115,006 European ancestry individuals	NA	8p21.3		rs117026536-G	0.900107	2E-8		0.0368474	[0.024-0.05] unit decrease	NR [11722792] (imputed)	N
736	chr8	19818772	19818773	rs117026536	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large HDL particles	115,082 European ancestry individuals	NA	8p21.3		rs117026536-G	0.900082	2E-39		0.0813245	[0.069-0.093] unit decrease	NR [11722792] (imputed)	N
736	chr8	19818772	19818773	rs117026536	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	8p21.3		rs117026536-G	0.900082	1E-182		0.185614	[0.17-0.2] unit decrease	NR [11722792] (imputed)	N
736	chr8	19818772	19818773	rs117026536	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	8p21.3		rs117026536-G	0.900082	3E-48		0.0989556	[0.086-0.112] unit decrease	NR [11722792] (imputed)	N
736	chr8	19818772	19818773	rs117026536	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	8p21.3		rs117026536-G	0.900082	1E-158		0.172573	[0.16-0.19] unit decrease	NR [11722792] (imputed)	N
736	chr8	19818772	19818773	rs117026536	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	8p21.3		rs117026536-G	0.900072	3E-43		0.0908362	[0.078-0.104] unit decrease	NR [11722792] (imputed)	N
736	chr8	19818772	19818773	rs117026536	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in IDL	115,082 European ancestry individuals	NA	8p21.3		rs117026536-G	0.900082	2E-139		0.168149	[0.16-0.18] unit decrease	NR [11722792] (imputed)	N
736	chr8	19818772	19818773	rs117026536	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	8p21.3		rs117026536-G	0.900082	4E-85		0.120557	[0.11-0.13] unit decrease	NR [11722792] (imputed)	N
736	chr8	19818772	19818773	rs117026536	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in IDL	115,082 European ancestry individuals	NA	8p21.3		rs117026536-G	0.900082	2E-32		0.0788035	[0.066-0.092] unit decrease	NR [11722792] (imputed)	N
736	chr8	19818772	19818773	rs117026536	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	8p21.3		rs117026536-G	0.900082	2E-170		0.180402	[0.17-0.19] unit decrease	NR [11722792] (imputed)	N
736	chr8	19818772	19818773	rs117026536	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	8p21.3		rs117026536-G	0.900082	3E-103		0.143919	[0.13-0.16] unit decrease	NR [11722792] (imputed)	N
736	chr8	19818772	19818773	rs117026536	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	8p21.3		rs117026536-G	0.900082	4E-142		0.163899	[0.15-0.18] unit decrease	NR [11722792] (imputed)	N
736	chr8	19818772	19818773	rs117026536	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	8p21.3		rs117026536-G	0.900082	9E-61		0.109775	[0.097-0.123] unit decrease	NR [11722792] (imputed)	N
736	chr8	19818772	19818773	rs117026536	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	8p21.3		rs117026536-G	0.900082	3E-122		0.151809	[0.14-0.16] unit decrease	NR [11722792] (imputed)	N
736	chr8	19818772	19818773	rs117026536	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	8p21.3		rs117026536-G	0.900082	6E-179		0.190338	[0.18-0.2] unit decrease	NR [11722792] (imputed)	N
736	chr8	19818772	19818773	rs117026536	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	8p21.3		rs117026536-G	0.900082	5E-77		0.115313	[0.1-0.13] unit decrease	NR [11722792] (imputed)	N
736	chr8	19818772	19818773	rs117026536	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in IDL	115,082 European ancestry individuals	NA	8p21.3		rs117026536-G	0.900082	2E-32		0.0789136	[0.066-0.092] unit decrease	NR [11722792] (imputed)	N
736	chr8	19818772	19818773	rs117026536	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for LDL particles	115,082 European ancestry individuals	NA	8p21.3		rs117026536-G	0.900082	8E-38		0.0862278	[0.073-0.099] unit decrease	NR [11722792] (imputed)	N
736	chr8	19818772	19818773	rs117026536	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	8p21.3	NR	rs117026536-T	0.100833	3E-14		0.025081	[0.019-0.032] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
736	chr8	19819076	19819077	rs320	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_52:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs320-G	NR	3E-11		0.106784	[0.075-0.138] unit decrease	Affymetrix [87696910] (imputed)	N
736	chr8	19819076	19819077	rs320	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_38:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs320-G	NR	4E-11		0.0850972	[0.06-0.11] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19819076	19819077	rs320	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:1_[M+H]1+/Phosphatidylethanolamine_37:1_[M+H]1+/Phosphatidate_39:2_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs320-G	NR	1E-10		0.083176	[0.058-0.108] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19819076	19819077	rs320	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:0_[M+H]1+/Phosphatidylethanolamine_37:0_[M+H]1+/Phosphatidate_39:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs320-G	NR	9E-12		0.0876776	[0.062-0.113] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19819076	19819077	rs320	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_36:3_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs320-G	NR	1E-12		0.0829647	[0.06-0.106] unit decrease	Affymetrix [87696910] (imputed)	N
736	chr8	19819076	19819077	rs320	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_36:2_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs320-G	NR	1E-10		0.0742505	[0.052-0.097] unit decrease	Affymetrix [87696910] (imputed)	N
736	chr8	19819076	19819077	rs320	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_34:2_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs320-G	NR	6E-11		0.075134	[0.053-0.098] unit decrease	Affymetrix [87696910] (imputed)	N
736	chr8	19819216	19819217	rs322	34601942	van Zuydam NR	2021-10-04	Circ Genom Precis Med	Genome-Wide Association Study of Peripheral Artery Disease.	Peripheral artery disease	12,086 European ancestry cases, 449,548 European ancestry controls	31,307 cases, 211,753 controls, 3,164 East Asian ancestry cases, 20,134 East Asian ancestry controls	8p21.3		rs322-A	0.27	2E-9		1.06	[1.04-1.07]	Affymetrix, Illumina [NR] (imputed)	N
736	chr8	19819216	19819217	rs322	31285632	Klarin D	2019-07-08	Nat Med	Genome-wide association study of peripheral artery disease in the Million Veteran Program.	Peripheral artery disease	24,009 European ancestry cases, 150,983 European ancestry controls, 5,373 African ancestry cases, 42,485 African ancestry controls, 1,925 Hispanic cases, 18,285 Hispanic controls	5,117 European ancestry cases, 389,291 European ancestry controls	8p21.3	LPL	rs322-A	0.702	3E-9		1.06	[1.04-1.07]	Affymetrix [at least 20323458] (imputed)	N
736	chr8	19819327	19819328	rs325	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	8p21.3		rs325-T	0.899484	9E-20		0.0609858	[0.048-0.074] unit decrease	NR [11722792] (imputed)	N
736	chr8	19819327	19819328	rs325	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total cholesterol in chylomicrons and extremely large VLDL	4,348 individuals	NA	8p21.3		rs325-C	0.11277288	1E-14		0.271192	[0.2-0.34] mmol/l decrease	Illumina [7701709] (imputed)	N
736	chr8	19819327	19819328	rs325	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial cholesterol esters in chylomicrons and extremely large VLDL	4,348 individuals	NA	8p21.3		rs325-C	0.11277288	3E-14		0.265847	[0.2-0.33] mmol/l decrease	Illumina [7701709] (imputed)	N
736	chr8	19819327	19819328	rs325	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total cholesterol in large VLDL	4,734 individuals	NA	8p21.3		rs325-C	0.112913982	6E-16		0.271045	[0.21-0.34] mmol/l decrease	Illumina [7701709] (imputed)	N
736	chr8	19819327	19819328	rs325	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting cholesterol esters in large VLDL	4,734 individuals	NA	8p21.3		rs325-C	0.112913982	2E-16		0.27554	[0.21-0.34] mmol/l decrease	Illumina [7701709] (imputed)	N
736	chr8	19819327	19819328	rs325	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_38:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs325-C	NR	3E-13		0.139904	[0.1-0.18] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19819327	19819328	rs325	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_36:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs325-C	NR	2E-13		0.137255	[0.1-0.17] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19819327	19819328	rs325	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_36:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs325-C	NR	2E-14		0.14849	[0.11-0.19] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19819327	19819328	rs325	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_36:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs325-C	NR	1E-14		0.145501	[0.11-0.18] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19819327	19819328	rs325	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_34:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs325-C	NR	1E-11		0.122608	[0.087-0.158] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19819327	19819328	rs325	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_34:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs325-C	NR	1E-12		0.139703	[0.1-0.18] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19819327	19819328	rs325	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_34:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs325-C	NR	2E-12		0.13486	[0.098-0.172] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19819327	19819328	rs325	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_34:1_[M+H]1+/Phosphatidylcholine-P_34:0_[M+H]1+/Phosphatidylethanolamine-O_37:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs325-C	NR	4E-10		0.116836	[0.08-0.154] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19819327	19819328	rs325	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_32:1_[M+H]1+/Phosphatidylcholine-P_32:0_[M+H]1+/Phosphatidylethanolamine-O_35:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs325-C	NR	7E-12		0.133691	[0.096-0.172] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19819327	19819328	rs325	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_44:7_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs325-C	NR	9E-13		0.135486	[0.098-0.173] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19819327	19819328	rs325	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_36:3_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs325-C	NR	3E-12		0.122101	[0.088-0.156] unit decrease	Affymetrix [87696910] (imputed)	N
736	chr8	19819327	19819328	rs325	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_36:2_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs325-C	NR	1E-11		0.1167	[0.083-0.15] unit decrease	Affymetrix [87696910] (imputed)	N
736	chr8	19819327	19819328	rs325	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_34:2_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs325-C	NR	8E-12		0.117423	[0.084-0.151] unit decrease	Affymetrix [87696910] (imputed)	N
736	chr8	19819327	19819328	rs325	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_34:1_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs325-C	NR	1E-10		0.112766	[0.078-0.147] unit decrease	Affymetrix [87696910] (imputed)	N
736	chr8	19819327	19819328	rs325	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_18:0_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs325-C	NR	4E-10		0.0869899	[0.06-0.114] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19819327	19819328	rs325	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	8p21.3	NR	rs325-?	NR	6E-35		0.09017404	[0.076-0.105] unit decrease	Illumina [31978265] (imputed)	N
736	chr8	19819327	19819328	rs325	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	8p21.3	NR	rs325-?	NR	1E-24		2.102914	[1.7-2.51] unit increase	Illumina [31978362] (imputed)	N
736	chr8	19819327	19819328	rs325	30670697	Kilpelainen TO	2019-01-22	Nat Commun	Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity.	Triglycerides x physical activity interaction (2df test)	7,294 African American inactive individuals, 12,832 African American active individuals, 1,352 Asian ancestry inactive individuals, 3,049 Asian ancestry active individuals, 20,622 European ancestry inactive individuals, 51,480 European ancestry active individuals, 2,166 Hispanic or Latin American inactive individuals, 3,486 Hispanic or Latin American active individuals	580 African American inactive individuals, 1,540 African American active individuals, 1,217 South African Black ancestry inactive individuals, 389 South African Black ancestry active individuals, 765 East Asian ancestry inactive individuals, 1,814 East Asian ancestry active individuals,  724 South Asian ancestry inactive individuals, 1,424 South Asian ancestry active individuals, 32,456 European ancestry inactive individuals, 49,510 European ancestry active individuals, 2,619 Hispanic inactive individuals, 8,803 Hispanic active individuals	8p21.3	NR	rs325-T	0.9032	4E-227				Affymetrix, Illumina [at least 2500000] (imputed)	N
736	chr8	19819327	19819328	rs325	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	High density lipoprotein cholesterol levels	70,657 Japanese ancestry individuals	NA	8p21.3	LPL	rs325-?	NR	2E-79		0.1483	[0.13-0.16] unit increase novel	Illumina [6108953] (imputed)	N
736	chr8	19819327	19819328	rs325	20864672	Waterworth DM	2010-09-23	Arterioscler Thromb Vasc Biol	Genetic variants influencing circulating lipid levels and risk of coronary artery disease.	HDL cholesterol	up to 17,723 European ancestry individuals	up to 37,774 European ancestry individuals, up to 9,665 Indian Asian ancestry individuals	8p21.3	LPL	rs325-T	0.89	8E-26		0.05	[0.04-0.06] unit decrease	Affymetrix, Illumina, Perlegen [2155369] (imputed)	N
736	chr8	19819438	19819439	rs326	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	8p21.3		rs326-?	NR	5E-10		0.00624397	[0.0043-0.0082] unit increase	NR [NR]	N
736	chr8	19819438	19819439	rs326	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_53:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs326-G	NR	4E-10		0.0986025	[0.068-0.129] unit decrease	Affymetrix [87696910] (imputed)	N
736	chr8	19819438	19819439	rs326	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_52:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs326-G	NR	4E-12		0.109591	[0.079-0.14] unit decrease	Affymetrix [87696910] (imputed)	N
736	chr8	19819438	19819439	rs326	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_46:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs326-G	NR	1E-10		0.0948037	[0.066-0.124] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19819438	19819439	rs326	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_40:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs326-G	NR	1E-10		0.0951078	[0.066-0.124] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19819438	19819439	rs326	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_38:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs326-G	NR	3E-13		0.0918534	[0.067-0.117] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19819438	19819439	rs326	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_34:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs326-G	NR	3E-10		0.0748794	[0.052-0.098] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19819438	19819439	rs326	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:1_[M+H]1+/Phosphatidylethanolamine_37:1_[M+H]1+/Phosphatidate_39:2_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs326-G	NR	5E-11		0.0828694	[0.058-0.108] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19819438	19819439	rs326	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:0_[M+H]1+/Phosphatidylethanolamine_37:0_[M+H]1+/Phosphatidate_39:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs326-G	NR	4E-12		0.0874372	[0.063-0.112] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19819438	19819439	rs326	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_34:1_[M+H]1+/Phosphatidylcholine-P_34:0_[M+H]1+/Phosphatidylethanolamine-O_37:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs326-G	NR	7E-12		0.0842216	[0.06-0.108] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19819438	19819439	rs326	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_32:1_[M+H]1+/Phosphatidylcholine-P_32:0_[M+H]1+/Phosphatidylethanolamine-O_35:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs326-G	NR	2E-11		0.0854791	[0.06-0.11] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19819438	19819439	rs326	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_36:3_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs326-G	NR	5E-13		0.0826657	[0.06-0.105] unit decrease	Affymetrix [87696910] (imputed)	N
736	chr8	19819438	19819439	rs326	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_36:2_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs326-G	NR	2E-11		0.0761488	[0.054-0.098] unit decrease	Affymetrix [87696910] (imputed)	N
736	chr8	19819438	19819439	rs326	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_34:2_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs326-G	NR	2E-12		0.0788362	[0.057-0.101] unit decrease	Affymetrix [87696910] (imputed)	N
736	chr8	19819438	19819439	rs326	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_34:1_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs326-G	NR	2E-10		0.0726254	[0.05-0.095] unit decrease	Affymetrix [87696910] (imputed)	N
736	chr8	19819438	19819439	rs326	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	8p21.3	NR	rs326-?	NR	1E-43		0.05914916	[0.051-0.068] unit decrease	Illumina [31978265] (imputed)	N
736	chr8	19819438	19819439	rs326	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	8p21.3	NR	rs326-?	NR	2E-36		1.504851	[1.27-1.74] unit increase	Illumina [31978362] (imputed)	N
736	chr8	19819438	19819439	rs326	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p21.3	NR	rs326-A	NR	7E-163		0.11	unit increase	Affymetrix [at least 7091467] (imputed)	N
736	chr8	19819438	19819439	rs326	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p21.3	NR	rs326-A	0.802	1E-11	(East Asian)	0.123	unit increase	Affymetrix [at least 7091467] (imputed)	N
736	chr8	19819438	19819439	rs326	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p21.3	NR	rs326-A	0.696	8E-19	(Hispanic)	0.13	unit increase	Affymetrix [at least 7091467] (imputed)	N
736	chr8	19819438	19819439	rs326	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p21.3	NR	rs326-A	0.693	2E-130	(EA)	0.108	unit increase	Affymetrix [at least 7091467] (imputed)	N
736	chr8	19819438	19819439	rs326	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p21.3	NR	rs326-A	0.463	1E-6	(AA)	0.11	unit increase	Affymetrix [at least 7091467] (imputed)	N
736	chr8	19819438	19819439	rs326	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p21.3	NR	rs326-A	NR	2E-125		0.088	unit decrease	Affymetrix [at least 7091467] (imputed)	N
736	chr8	19819438	19819439	rs326	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p21.3	NR	rs326-A	0.802	1E-10	(East Asian)	0.108	unit decrease	Affymetrix [at least 7091467] (imputed)	N
736	chr8	19819438	19819439	rs326	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p21.3	NR	rs326-A	0.696	1E-18	(Hispanic)	0.117	unit decrease	Affymetrix [at least 7091467] (imputed)	N
736	chr8	19819438	19819439	rs326	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p21.3	NR	rs326-A	0.693	3E-96	(EA)	0.084	unit decrease	Affymetrix [at least 7091467] (imputed)	N
736	chr8	19819438	19819439	rs326	23726366	Coram MA	2013-05-29	Am J Hum Genet	Genome-wide characterization of shared and distinct genetic components that influence blood lipid levels in ethnically diverse human populations.	Triglycerides	7,601 African American individuals, 3,335 Hispanic individuals	7,138 African American individuals	8p21.3	LPL	rs326-T	0.469	1E-8	(AA)	0.041	[NR] unit decrease	Affymetrix [NR]	N
736	chr8	19819438	19819439	rs326	23726366	Coram MA	2013-05-29	Am J Hum Genet	Genome-wide characterization of shared and distinct genetic components that influence blood lipid levels in ethnically diverse human populations.	HDL cholesterol	7,917 African American individuals, 3,506 Hispanic individuals	7,138 African American individuals	8p21.3	LPL	rs326-T	0.469	1E-8	(AA)	0.0221	[NR] unit increase	Affymetrix [NR]	N
736	chr8	19819438	19819439	rs326	18193046	Kooner JS	2008-01-13	Nat Genet	Genome-wide scan identifies variation in MLXIPL associated with plasma triglycerides.	Triglycerides	1,005 European ancestry male individuals, 1,006 Indian Asian ancestry male individuals	6,827 European ancestry individuals, 2,528 Mexican ancestry individuals, 1,181 Indian Asian ancestry female individuals	8p21.3	SLC18A1, LPL, C8orf35	rs326-A	0.78	5E-12		6.6	[3.66-9.54] % increase	Perlegen [up to 216774]	N
736	chr8	19819535	19819536	rs327	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	8p21.3	LPL	rs327-?	NR	8E-12	(MUFA)	0.05021107	NR unit decrease	Illumina [609262]	N
736	chr8	19819535	19819536	rs327	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	8p21.3	LPL	rs327-?	NR	7E-14	(M_VLDL_P)	0.07468745	NR unit decrease	Illumina [609262]	N
736	chr8	19819535	19819536	rs327	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	8p21.3	LPL	rs327-?	NR	7E-10	(L_HDL_PL)	0.064051345	NR unit increase	Illumina [609262]	N
736	chr8	19819535	19819536	rs327	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	8p21.3	LPL	rs327-?	NR	5E-14	(TG_PG)	0.07144418	NR unit decrease	Illumina [609262]	N
736	chr8	19819535	19819536	rs327	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	8p21.3	LPL	rs327-?	NR	4E-10	(L_HDL_P)	0.068877056	NR unit increase	Illumina [609262]	N
736	chr8	19819535	19819536	rs327	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	8p21.3	LPL	rs327-?	NR	9E-9	(L_HDL_PL)	0.07140743	NR unit increase	Illumina [609262]	N
736	chr8	19819535	19819536	rs327	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	8p21.3	LPL	rs327-?	NR	9E-8	(L_HDL_P)	0.06649333	NR unit increase	Illumina [609262]	N
736	chr8	19819535	19819536	rs327	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	8p21.3	LPL	rs327-?	NR	8E-12	(TG_PG)	0.083825134	NR unit decrease	Illumina [609262]	N
736	chr8	19819535	19819536	rs327	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	8p21.3	LPL	rs327-?	NR	2E-10	(M_VLDL_P)	0.07982425	NR unit decrease	Illumina [609262]	N
736	chr8	19819723	19819724	rs328	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	8p21.3		rs328-C	0.899697	7E-191		0.189377	[0.18-0.2] unit increase	NR [11722792] (imputed)	N
736	chr8	19819723	19819724	rs328	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	8p21.3		rs328-C	0.899693	2E-173		0.184988	[0.17-0.2] unit increase	NR [11722792] (imputed)	N
736	chr8	19819723	19819724	rs328	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	8p21.3		rs328-C	0.899693	5E-268		0.226657	[0.21-0.24] unit increase	NR [11722792] (imputed)	N
736	chr8	19819723	19819724	rs328	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	8p21.3		rs328-C	0.899693	5E-252		0.221689	[0.21-0.23] unit increase	NR [11722792] (imputed)	N
736	chr8	19819723	19819724	rs328	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	8p21.3		rs328-C	0.899693	2E-234		0.210374	[0.2-0.22] unit increase	NR [11722792] (imputed)	N
736	chr8	19819723	19819724	rs328	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large VLDL	115,082 European ancestry individuals	NA	8p21.3		rs328-C	0.899693	6E-182		0.188064	[0.18-0.2] unit increase	NR [11722792] (imputed)	N
736	chr8	19819723	19819724	rs328	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small VLDL	115,082 European ancestry individuals	NA	8p21.3		rs328-C	0.899693	2E-225		0.211519	[0.2-0.22] unit increase	NR [11722792] (imputed)	N
736	chr8	19819723	19819724	rs328	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small LDL	115,082 European ancestry individuals	NA	8p21.3		rs328-C	0.899693	3E-158		0.177902	[0.16-0.19] unit increase	NR [11722792] (imputed)	N
736	chr8	19819723	19819724	rs328	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small HDL	115,082 European ancestry individuals	NA	8p21.3		rs328-C	0.899693	2E-182		0.190316	[0.18-0.2] unit increase	NR [11722792] (imputed)	N
736	chr8	19819723	19819724	rs328	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium VLDL	115,082 European ancestry individuals	NA	8p21.3		rs328-C	0.899693	9E-174		0.186554	[0.17-0.2] unit increase	NR [11722792] (imputed)	N
736	chr8	19819723	19819724	rs328	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large VLDL	115,082 European ancestry individuals	NA	8p21.3		rs328-C	0.899693	4E-171		0.183553	[0.17-0.2] unit increase	NR [11722792] (imputed)	N
736	chr8	19819723	19819724	rs328	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	8p21.3		rs328-C	0.899693	9E-139		0.165674	[0.15-0.18] unit increase	NR [11722792] (imputed)	N
736	chr8	19819723	19819724	rs328	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in VLDL	115,082 European ancestry individuals	NA	8p21.3		rs328-C	0.899693	7E-190		0.193204	[0.18-0.21] unit increase	NR [11722792] (imputed)	N
736	chr8	19819723	19819724	rs328	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total triglycerides levels	115,082 European ancestry individuals	NA	8p21.3		rs328-C	0.899693	4E-186		0.192009	[0.18-0.2] unit increase	NR [11722792] (imputed)	N
736	chr8	19819723	19819724	rs328	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large VLDL	115,082 European ancestry individuals	NA	8p21.3		rs328-C	0.899693	4E-184		0.190391	[0.18-0.2] unit increase	NR [11722792] (imputed)	N
736	chr8	19819723	19819724	rs328	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium VLDL	115,082 European ancestry individuals	NA	8p21.3		rs328-C	0.899693	1E-96		0.14183	[0.13-0.16] unit increase	NR [11722792] (imputed)	N
736	chr8	19819723	19819724	rs328	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large VLDL	115,082 European ancestry individuals	NA	8p21.3		rs328-C	0.899693	2E-181		0.189738	[0.18-0.2] unit increase	NR [11722792] (imputed)	N
736	chr8	19819723	19819724	rs328	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	8p21.3		rs328-C	0.899693	2E-161		0.178378	[0.17-0.19] unit increase	NR [11722792] (imputed)	N
736	chr8	19819723	19819724	rs328	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in VLDL	115,082 European ancestry individuals	NA	8p21.3		rs328-C	0.899693	1E-153		0.176976	[0.16-0.19] unit increase	NR [11722792] (imputed)	N
736	chr8	19819723	19819724	rs328	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total fatty acid levels	115,006 European ancestry individuals	NA	8p21.3		rs328-C	0.899718	3E-45		0.0955148	[0.082-0.109] unit increase	NR [11722792] (imputed)	N
736	chr8	19819723	19819724	rs328	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	8p21.3		rs328-C	0.899718	4E-257		0.217265	[0.2-0.23] unit increase	NR [11722792] (imputed)	N
736	chr8	19819723	19819724	rs328	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	8p21.3		rs328-C	0.899718	3E-97		0.137521	[0.12-0.15] unit decrease	NR [11722792] (imputed)	N
736	chr8	19819723	19819724	rs328	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of docosahexaenoic acid to total fatty acid levels	115,006 European ancestry individuals	NA	8p21.3		rs328-C	0.899718	2E-44		0.0925597	[0.08-0.106] unit decrease	NR [11722792] (imputed)	N
736	chr8	19819723	19819724	rs328	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	8p21.3		rs328-C	0.899693	6E-70		0.121095	[0.11-0.13] unit decrease	NR [11722792] (imputed)	N
736	chr8	19819723	19819724	rs328	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	8p21.3		rs328-C	0.899684	1E-125		0.158488	[0.15-0.17] unit increase	NR [11722792] (imputed)	N
736	chr8	19819723	19819724	rs328	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large VLDL	115,082 European ancestry individuals	NA	8p21.3		rs328-C	0.899693	4E-185		0.191405	[0.18-0.2] unit increase	NR [11722792] (imputed)	N
736	chr8	19819723	19819724	rs328	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large VLDL	115,082 European ancestry individuals	NA	8p21.3		rs328-C	0.899693	9E-193		0.195353	[0.18-0.21] unit increase	NR [11722792] (imputed)	N
736	chr8	19819723	19819724	rs328	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	8p21.3		rs328-C	0.899693	6E-185		0.190231	[0.18-0.2] unit increase	NR [11722792] (imputed)	N
736	chr8	19819723	19819724	rs328	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in VLDL	115,082 European ancestry individuals	NA	8p21.3		rs328-C	0.899693	7E-132		0.164995	[0.15-0.18] unit increase	NR [11722792] (imputed)	N
736	chr8	19819723	19819724	rs328	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Monounsaturated fatty acid levels	115,006 European ancestry individuals	NA	8p21.3		rs328-C	0.899718	9E-102		0.144553	[0.13-0.16] unit increase	NR [11722792] (imputed)	N
736	chr8	19819723	19819724	rs328	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	8p21.3		rs328-C	0.899693	2E-190		0.19417	[0.18-0.21] unit decrease	NR [11722792] (imputed)	N
736	chr8	19819723	19819724	rs328	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	8p21.3		rs328-C	0.899693	2E-218		0.205728	[0.19-0.22] unit decrease	NR [11722792] (imputed)	N
736	chr8	19819723	19819724	rs328	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	8p21.3		rs328-C	0.899693	2E-81		0.130034	[0.12-0.14] unit decrease	NR [11722792] (imputed)	N
736	chr8	19819723	19819724	rs328	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	8p21.3		rs328-C	0.899693	2E-182		0.190667	[0.18-0.2] unit increase	NR [11722792] (imputed)	N
736	chr8	19819723	19819724	rs328	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	8p21.3		rs328-C	0.899693	8E-180		0.189059	[0.18-0.2] unit increase	NR [11722792] (imputed)	N
736	chr8	19819723	19819724	rs328	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	8p21.3		rs328-C	0.899693	4E-183		0.190011	[0.18-0.2] unit increase	NR [11722792] (imputed)	N
736	chr8	19819723	19819724	rs328	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in VLDL	115,082 European ancestry individuals	NA	8p21.3		rs328-C	0.899693	6E-107		0.149116	[0.14-0.16] unit increase	NR [11722792] (imputed)	N
736	chr8	19819723	19819724	rs328	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Degree of unsaturation	115,006 European ancestry individuals	NA	8p21.3		rs328-C	0.899718	7E-75		0.119088	[0.11-0.13] unit decrease	NR [11722792] (imputed)	N
736	chr8	19819723	19819724	rs328	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large VLDL particles	115,082 European ancestry individuals	NA	8p21.3		rs328-C	0.899693	4E-189		0.192664	[0.18-0.21] unit increase	NR [11722792] (imputed)	N
736	chr8	19819723	19819724	rs328	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small VLDL particles	115,082 European ancestry individuals	NA	8p21.3		rs328-C	0.899693	2E-149		0.175306	[0.16-0.19] unit increase	NR [11722792] (imputed)	N
736	chr8	19819723	19819724	rs328	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large VLDL particles	115,082 European ancestry individuals	NA	8p21.3		rs328-C	0.899693	5E-188		0.192955	[0.18-0.21] unit increase	NR [11722792] (imputed)	N
736	chr8	19819723	19819724	rs328	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of chylomicrons and extremely large VLDL particles	115,082 European ancestry individuals	NA	8p21.3		rs328-C	0.899693	8E-177		0.186375	[0.17-0.2] unit increase	NR [11722792] (imputed)	N
736	chr8	19819723	19819724	rs328	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	8p21.3		rs328-C	0.900057	1E-105		0.143301	[0.13-0.16] unit decrease	NR [11722792] (imputed)	N
736	chr8	19819723	19819724	rs328	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	8p21.3		rs328-C	0.899693	1E-80		0.130156	[0.12-0.14] unit increase	NR [11722792] (imputed)	N
736	chr8	19819723	19819724	rs328	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	8p21.3		rs328-C	0.899693	5E-202		0.200421	[0.19-0.21] unit decrease	NR [11722792] (imputed)	N
736	chr8	19819723	19819724	rs328	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	8p21.3		rs328-C	0.899693	2E-118		0.15076	[0.14-0.16] unit decrease	NR [11722792] (imputed)	N
736	chr8	19819723	19819724	rs328	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large VLDL	115,082 European ancestry individuals	NA	8p21.3		rs328-C	0.899693	4E-137		0.16794	[0.15-0.18] unit increase	NR [11722792] (imputed)	N
736	chr8	19819723	19819724	rs328	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large VLDL	115,082 European ancestry individuals	NA	8p21.3		rs328-C	0.899693	1E-145		0.173728	[0.16-0.19] unit increase	NR [11722792] (imputed)	N
736	chr8	19819723	19819724	rs328	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	8p21.3		rs328-C	0.899693	6E-188		0.193175	[0.18-0.21] unit increase	NR [11722792] (imputed)	N
736	chr8	19819723	19819724	rs328	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	8p21.3		rs328-C	0.899693	3E-158		0.164871	[0.15-0.18] unit decrease	NR [11722792] (imputed)	N
736	chr8	19819723	19819724	rs328	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	8p21.3		rs328-C	0.900057	1E-93		0.134721	[0.12-0.15] unit decrease	NR [11722792] (imputed)	N
736	chr8	19819723	19819724	rs328	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	8p21.3		rs328-C	0.899693	1E-221		0.206712	[0.19-0.22] unit decrease	NR [11722792] (imputed)	N
736	chr8	19819723	19819724	rs328	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	8p21.3		rs328-C	0.899693	2E-162		0.181554	[0.17-0.19] unit increase	NR [11722792] (imputed)	N
736	chr8	19819723	19819724	rs328	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	8p21.3		rs328-C	0.899693	2E-166		0.183857	[0.17-0.2] unit increase	NR [11722792] (imputed)	N
736	chr8	19819723	19819724	rs328	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	8p21.3		rs328-C	0.899693	2E-188		0.192971	[0.18-0.21] unit increase	NR [11722792] (imputed)	N
736	chr8	19819723	19819724	rs328	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for VLDL particles	115,082 European ancestry individuals	NA	8p21.3		rs328-C	0.899693	5E-186		0.185702	[0.17-0.2] unit increase	NR [11722792] (imputed)	N
736	chr8	19819723	19819724	rs328	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	8p21.3		rs328-G	NR	6E-731		0.1871	[0.18-0.19] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
736	chr8	19819723	19819724	rs328	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	74,970 East Asian ancestry individuals	NA	8p21.3		rs328-G	0.124304	4E-89		0.141481	[0.13-0.16] unit increase	Illumina [13465896] (imputed)	N
736	chr8	19819723	19819724	rs328	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_38:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs328-G	NR	3E-13		0.139771	[0.1-0.18] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19819723	19819724	rs328	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_36:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs328-G	NR	2E-13		0.13741	[0.1-0.17] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19819723	19819724	rs328	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_36:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs328-G	NR	2E-14		0.148034	[0.11-0.19] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19819723	19819724	rs328	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_36:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs328-G	NR	1E-14		0.145042	[0.11-0.18] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19819723	19819724	rs328	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_34:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs328-G	NR	1E-11		0.122817	[0.087-0.158] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19819723	19819724	rs328	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_34:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs328-G	NR	1E-12		0.13948	[0.1-0.18] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19819723	19819724	rs328	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_34:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs328-G	NR	2E-12		0.13458	[0.097-0.172] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19819723	19819724	rs328	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:1_[M+H]1+/Phosphatidylethanolamine_37:1_[M+H]1+/Phosphatidate_39:2_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs328-G	NR	4E-10		0.120527	[0.083-0.158] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19819723	19819724	rs328	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_32:1_[M+H]1+/Phosphatidylcholine-P_32:0_[M+H]1+/Phosphatidylethanolamine-O_35:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs328-G	NR	7E-12		0.133348	[0.095-0.172] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19819723	19819724	rs328	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_44:7_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs328-G	NR	1E-12		0.1352	[0.098-0.172] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19819723	19819724	rs328	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_36:3_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs328-G	NR	2E-12		0.122421	[0.088-0.157] unit decrease	Affymetrix [87696910] (imputed)	N
736	chr8	19819723	19819724	rs328	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_36:2_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs328-G	NR	1E-11		0.117068	[0.083-0.151] unit decrease	Affymetrix [87696910] (imputed)	N
736	chr8	19819723	19819724	rs328	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_34:2_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs328-G	NR	6E-12		0.11787	[0.084-0.151] unit decrease	Affymetrix [87696910] (imputed)	N
736	chr8	19819723	19819724	rs328	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_34:1_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs328-G	NR	9E-11		0.113335	[0.079-0.148] unit decrease	Affymetrix [87696910] (imputed)	N
736	chr8	19819723	19819724	rs328	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_18:0_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs328-G	NR	4E-10		0.0871674	[0.06-0.114] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19819723	19819724	rs328	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Triglyceride levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	8p21.3	LPL	rs328-?		1E-196		0.1695	[0.16-0.18] unit decrease	Illumina [31500000] (imputed)	N
736	chr8	19819723	19819724	rs328	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	High density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	8p21.3	LPL	rs328-?		2E-115		0.1511	[0.14-0.16] unit increase	Illumina [31500000] (imputed)	N
736	chr8	19819723	19819724	rs328	32469254	Matsunaga H	2020-05-29	Circ Genom Precis Med	Transethnic Meta-analysis of Genome-wide Association Studies Identifies Three New Loci and Characterizes Population-specific Differences for Coronary Artery Disease.	Coronary artery disease	15,302 Japanese ancestry cases, 76,014 European and East Asian ancestry cases, 36,140 Japanese ancestry controls, 264,785 European and East Asian ancestry controls	NA	8p21.3	LPL	rs328-C	0.9	3E-8		1.07	[1.03-1.12]	Illumina [5167567] (imputed)	N
736	chr8	19819723	19819724	rs328	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Triglyceride levels	2,045 European ancestry individuals	NA	8p21.3	NR	rs328-G	NR	2E-6		0.2792	[0.16-0.39] unit decrease	Illumina [~ 9300000] (imputed)	N
736	chr8	19819723	19819724	rs328	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	8p21.3	NR	rs328-?	NR	5E-35		0.09029185	[0.076-0.105] unit decrease	Illumina [31978265] (imputed)	N
736	chr8	19819723	19819724	rs328	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	8p21.3	NR	rs328-?	NR	9E-25		2.112708	[1.71-2.52] unit increase	Illumina [31978362] (imputed)	N
736	chr8	19819723	19819724	rs328	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes (adjusted for BMI)	up to 48,286 European ancestry cases, up to 250,671 European ancestry controls	NA	8p21.3	LPL	rs328-C	0.902	3E-6		1.05	[1.03-1.07]	Affymetrix, Illumina [247470]	N
736	chr8	19819723	19819724	rs328	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes (adjusted for BMI)	48,286 European ancestry cases, 250,671 European ancestry controls, 33,126 African American, East Asian, Hispanic/Latino or South Asian cases, 120,161 African American, East Asian, Hispanic/Latino or South Asian controls	NA	8p21.3	LPL	rs328-C	0.903	2E-7		1.05	[1.03-1.07]	Affymetrix, Illumina [247470]	N
736	chr8	19819723	19819724	rs328	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes	up to 48,286 European ancestry cases, up to 250,671 European ancestry controls	NA	8p21.3	LPL	rs328-C	0.902	3E-6		1.05	[1.03-1.08]	Affymetrix, Illumina [247470]	N
736	chr8	19819723	19819724	rs328	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes	48,286 European ancestry cases, 250,671 European ancestry controls, 33,126 African American, East Asian, Hispanic/Latino or South Asian cases, 120,161 African American, East Asian, Hispanic/Latino or South Asian controls	NA	8p21.3	LPL	rs328-C	0.903	7E-9		1.05	[1.03-1.08]	Affymetrix, Illumina [247470]	N
736	chr8	19819723	19819724	rs328	28753643	Yeo A	2017-07-28	PLoS One	Pharmacogenetic meta-analysis of baseline risk factors, pharmacodynamic, efficacy and tolerability endpoints from two large global cardiovascular outcomes trials for darapladib.	Lipoprotein phospholipase A2 activity in cardiovascular disease	22,156 European, Asian, African, Arabic, Native American, Pacific Islander and other ancestry	NA	8p21.3	LPL	rs328-G	0.092	2E-6		3.7	[2.19-5.21] (nmol/min/ml) decrease	Affymetrix, Illumina [13572687] (imputed)	N
736	chr8	19819723	19819724	rs328	26763881	Kurano M	2016-01-14	J Hum Genet	Genome-wide association study of serum lipids confirms previously reported associations as well as new associations of common SNPs within PCSK7 gene with triglyceride.	HDL cholesterol levels	2,994 Japanese ancestry individuals	6,805 Korean ancestry individuals	8p21.3	LPL, RPL30P9	rs328-G	NR	6E-7	(Japanese)	0.24	[0.15-0.33] unit increase	Illumina [1294241]	N
736	chr8	19819723	19819724	rs328	24386095	Zhou L	2013-12-30	PLoS One	A genome wide association study identifies common variants associated with lipid levels in the Chinese population.	Lipid traits	3,451 Han Chinese ancestry individuals	8,830 Han Chinese ancestry individuals	8p21.3	LPL	rs328-G	0.09	3E-10	(TG)	0.071	[0.026-0.116] mmol/L decrease	Affymetrix, Illumina [up to 2249917] (imputed)	N
736	chr8	19819723	19819724	rs328	24386095	Zhou L	2013-12-30	PLoS One	A genome wide association study identifies common variants associated with lipid levels in the Chinese population.	Lipid traits	3,451 Han Chinese ancestry individuals	8,830 Han Chinese ancestry individuals	8p21.3	LPL	rs328-G	0.09	2E-14	(HDL)	0.04	[0.020-0.060] mmol/L increase	Affymetrix, Illumina [up to 2249917] (imputed)	N
736	chr8	19819723	19819724	rs328	22171074	Tan A	2011-12-30	Hum Mol Genet	A genome-wide association and gene-environment interaction study for serum triglycerides levels in a healthy Chinese male population.	Triglycerides	1,999 Han Chinese ancestry male individuals	1,496 Han Chinese ancestry male individuals	8p21.3	LPL	rs328-?	NR	1E-9				Illumina [1940243] (imputed)	N
736	chr8	19819723	19819724	rs328	18193044	Kathiresan S	2008-01-13	Nat Genet	Six new loci associated with blood low-density lipoprotein cholesterol, high-density lipoprotein cholesterol or triglycerides in humans.	Triglycerides	2,758 European ancestry individuals	18,554 European ancestry individuals	8p21.3	LPL	rs328-G	0.09	2E-28		0.19	[0.15-0.23] unit decrease	Affymetrix [389878]	N
736	chr8	19819723	19819724	rs328	18193044	Kathiresan S	2008-01-13	Nat Genet	Six new loci associated with blood low-density lipoprotein cholesterol, high-density lipoprotein cholesterol or triglycerides in humans.	HDL cholesterol	2,758 European ancestry individuals	18,554 European ancestry individuals	8p21.3	LPL	rs328-G	0.09	9E-23		0.17	[0.13-0.21] unit increase	Affymetrix [389878]	N
736	chr8	19820404	19820405	rs331	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting triglycerides levels in very small VLDL	4,734 individuals	NA	8p21.3		rs331-A	0.281257819	2E-19		0.206397	[0.16-0.25] mmol/l decrease	Illumina [7701709] (imputed)	N
736	chr8	19820404	19820405	rs331	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total lipids in small VLDL	4,734 individuals	NA	8p21.3		rs331-A	0.281026444	1E-20		0.213619	[0.17-0.26] mmol/l decrease	Illumina [7701709] (imputed)	N
736	chr8	19820404	19820405	rs331	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total cholesterol in VLDL	4,734 individuals	NA	8p21.3		rs331-A	0.281244613	5E-19		0.204137	[0.16-0.25] mmol/l decrease	Illumina [7701709] (imputed)	N
736	chr8	19820404	19820405	rs331	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting small VLDL particle concentration	4,734 individuals	NA	8p21.3		rs331-A	0.281026444	1E-20		0.214097	[0.17-0.26] mmol/l decrease	Illumina [7701709] (imputed)	N
736	chr8	19820404	19820405	rs331	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting phospholipid levels in small VLDL	4,734 individuals	NA	8p21.3		rs331-A	0.281026444	4E-19		0.2048	[0.16-0.25] mmol/l decrease	Illumina [7701709] (imputed)	N
736	chr8	19820404	19820405	rs331	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting monounsaturated fatty acids (16:1, 18:1)	4,734 individuals	NA	8p21.3		rs331-A	0.282032479	1E-13		0.170868	[0.13-0.22] mmol/l decrease	Illumina [7701709] (imputed)	N
736	chr8	19820404	19820405	rs331	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting isoleucine	4,734 individuals	NA	8p21.3		rs331-A	0.281422955	4E-9		0.135587	[0.091-0.181] mmol/l decrease	Illumina [7701709] (imputed)	N
736	chr8	19820404	19820405	rs331	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting glycoprotein acetyls (mainly a1-acid glycoprotein)	4,734 individuals	NA	8p21.3		rs331-A	0.281304035	2E-15		0.182542	[0.14-0.23] mmol/l decrease	Illumina [7701709] (imputed)	N
736	chr8	19820404	19820405	rs331	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting free cholesterol in small VLDL	4,734 individuals	NA	8p21.3		rs331-A	0.281026444	5E-20		0.210032	[0.17-0.25] mmol/l decrease	Illumina [7701709] (imputed)	N
736	chr8	19820404	19820405	rs331	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting free cholesterol in medium VLDL	4,734 individuals	NA	8p21.3		rs331-A	0.281271036	1E-19		0.208032	[0.16-0.25] mmol/l decrease	Illumina [7701709] (imputed)	N
736	chr8	19820404	19820405	rs331	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	8p21.3	LPL	rs331-G	0.73515	5E-340		0.0875575	[0.083-0.092] unit decrease	Affymetrix [NR] (imputed)	N
736	chr8	19820404	19820405	rs331	19936222	Chasman DI	2009-11-20	PLoS Genet	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry female individuals	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	8p21.3	LPL	rs331-?	NR	3E-14	(HDL-C.assay, fasting)	1.51	[NR] unit increase	Illumina [335603]	N
736	chr8	19820404	19820405	rs331	19936222	Chasman DI	2009-11-20	PLoS Genet	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry female individuals	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	8p21.3	LPL	rs331-?	NR	1E-17	(HDL-C.assay, whole)	1.459	[NR] unit increase	Illumina [335603]	N
736	chr8	19820404	19820405	rs331	19936222	Chasman DI	2009-11-20	PLoS Genet	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry female individuals	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	8p21.3	LPL	rs331-?	NR	1E-14	(HDL-C.by.NMR, whole)	1.21	[NR] unit increase	Illumina [335603]	N
736	chr8	19820404	19820405	rs331	19936222	Chasman DI	2009-11-20	PLoS Genet	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry female individuals	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	8p21.3	LPL	rs331-?	NR	1E-11	(HDL-C.by.NMR, fasting)	1.256	[NR] unit increase	Illumina [335603]	N
736	chr8	19820432	19820433	rs12679834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium HDL	115,082 European ancestry individuals	NA	8p21.3		rs12679834-T	0.89964	8E-118		0.155004	[0.14-0.17] unit increase	NR [11722792] (imputed)	N
736	chr8	19820432	19820433	rs12679834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in HDL	115,082 European ancestry individuals	NA	8p21.3		rs12679834-T	0.89964	2E-137		0.167002	[0.15-0.18] unit increase	NR [11722792] (imputed)	N
736	chr8	19820432	19820433	rs12679834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	8p21.3		rs12679834-T	0.89964	9E-108		0.150391	[0.14-0.16] unit increase	NR [11722792] (imputed)	N
736	chr8	19820432	19820433	rs12679834	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(53:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs12679834-G	NR	2E-26		0.1325	[0.11-0.16] unit increase	Illumina [6720657] (imputed)	N
736	chr8	19820432	19820433	rs12679834	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(53:2)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs12679834-T	NR	3E-26		0.0786	[0.064-0.093] unit decrease	Illumina [6720657] (imputed)	N
736	chr8	19820432	19820433	rs12679834	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs12679834-G	NR	3E-26		0.0835	[0.068-0.099] unit increase	Illumina [6720657] (imputed)	N
736	chr8	19820432	19820433	rs12679834	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs12679834-G	NR	2E-26		0.0722	[0.059-0.086] unit increase	Illumina [6720657] (imputed)	N
736	chr8	19820432	19820433	rs12679834	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:1)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs12679834-G	NR	2E-26		0.0786	[0.064-0.093] unit decrease	Illumina [6720657] (imputed)	N
736	chr8	19820432	19820433	rs12679834	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	8p21.3		rs12679834-?	NR	9E-60				NR [~ 8900000] (imputed)	N
736	chr8	19820479	19820480	rs76423146	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	8p21.3	LPL	rs76423146-T	0.027628	3E-20		0.06345217	[0.05-0.077] unit decrease	Affymetrix [93095623] (imputed)	N
736	chr8	19820915	19820916	rs117199990	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(53:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs117199990-C	NR	4E-28		0.1369	[0.11-0.16] unit increase	Illumina [6720657] (imputed)	N
736	chr8	19820915	19820916	rs117199990	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(53:2)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs117199990-G	NR	4E-28		0.08	[0.066-0.094] unit decrease	Illumina [6720657] (imputed)	N
736	chr8	19820915	19820916	rs117199990	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs117199990-A	NR	5E-28		0.0866	[0.071-0.102] unit increase	Illumina [6720657] (imputed)	N
736	chr8	19820915	19820916	rs117199990	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:2)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs117199990-G	NR	5E-28		0.0744	[0.061-0.088] unit decrease	Illumina [6720657] (imputed)	N
736	chr8	19820915	19820916	rs117199990	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs117199990-T	NR	4E-28		0.093	[0.076-0.11] unit decrease	Illumina [6720657] (imputed)	N
736	chr8	19820915	19820916	rs117199990	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs117199990-T	NR	3E-28		0.0682	[0.056-0.08] unit increase	Illumina [6720657] (imputed)	N
736	chr8	19820915	19820916	rs117199990	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs117199990-C	NR	4E-28		0.1068	[0.088-0.126] unit decrease	Illumina [6720657] (imputed)	N
736	chr8	19820915	19820916	rs117199990	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:1)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs117199990-G	NR	4E-28		0.0927	[0.076-0.109] unit decrease	Illumina [6720657] (imputed)	N
736	chr8	19820915	19820916	rs117199990	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs117199990-G	NR	4E-28		0.1553	[0.13-0.18] unit decrease	Illumina [6720657] (imputed)	N
736	chr8	19820915	19820916	rs117199990	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:1)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs117199990-C	NR	3E-28		0.0712	[0.058-0.084] unit increase	Illumina [6720657] (imputed)	N
736	chr8	19820915	19820916	rs117199990	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:0)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs117199990-A	NR	4E-28		0.0742	[0.061-0.088] unit decrease	Illumina [6720657] (imputed)	N
736	chr8	19820915	19820916	rs117199990	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs117199990-T	NR	4E-28		0.0859	[0.071-0.101] unit increase	Illumina [6720657] (imputed)	N
736	chr8	19820932	19820933	rs145391587	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large HDL	115,082 European ancestry individuals	NA	8p21.3		rs145391587-A	0.899713	1E-55		0.0968537	[0.085-0.109] unit decrease	NR [11722792] (imputed)	N
736	chr8	19820932	19820933	rs145391587	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	8p21.3		rs145391587-A	0.899713	2E-111		0.13489	[0.12-0.15] unit decrease	NR [11722792] (imputed)	N
736	chr8	19820932	19820933	rs145391587	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large HDL	115,082 European ancestry individuals	NA	8p21.3		rs145391587-A	0.899713	2E-52		0.0939703	[0.082-0.106] unit decrease	NR [11722792] (imputed)	N
736	chr8	19820932	19820933	rs145391587	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large HDL	115,082 European ancestry individuals	NA	8p21.3		rs145391587-A	0.899713	9E-110		0.134123	[0.12-0.15] unit decrease	NR [11722792] (imputed)	N
736	chr8	19820932	19820933	rs145391587	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	HDL cholesterol levels	115,082 European ancestry individuals	NA	8p21.3		rs145391587-A	0.899713	7E-146		0.157479	[0.15-0.17] unit decrease	NR [11722792] (imputed)	N
736	chr8	19820932	19820933	rs145391587	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	8p21.3		rs145391587-A	0.899717	2E-44		0.0848976	[0.073-0.097] unit increase	NR [11722792] (imputed)	N
736	chr8	19820932	19820933	rs145391587	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	8p21.3		rs145391587-A	0.899713	2E-108		0.132926	[0.12-0.14] unit decrease	NR [11722792] (imputed)	N
736	chr8	19820932	19820933	rs145391587	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	8p21.3		rs145391587-A	0.899713	2E-102		0.129062	[0.12-0.14] unit decrease	NR [11722792] (imputed)	N
736	chr8	19820932	19820933	rs145391587	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	8p21.3		rs145391587-A	0.899713	8E-136		0.150158	[0.14-0.16] unit decrease	NR [11722792] (imputed)	N
736	chr8	19820932	19820933	rs145391587	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	8p21.3		rs145391587-A	0.899713	2E-130		0.146647	[0.13-0.16] unit decrease	NR [11722792] (imputed)	N
736	chr8	19820932	19820933	rs145391587	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	8p21.3		rs145391587-A	0.899713	1E-74		0.11102	[0.099-0.123] unit decrease	NR [11722792] (imputed)	N
736	chr8	19820932	19820933	rs145391587	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(53:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs145391587-G	NR	3E-24		0.1221	[0.099-0.146] unit increase	Illumina [6720657] (imputed)	N
736	chr8	19820932	19820933	rs145391587	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs145391587-A	NR	3E-24		0.0769	[0.062-0.092] unit increase	Illumina [6720657] (imputed)	N
736	chr8	19820932	19820933	rs145391587	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs145391587-A	NR	3E-24		0.1221	[0.099-0.146] unit increase	Illumina [6720657] (imputed)	N
736	chr8	19820932	19820933	rs145391587	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:1)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs145391587-A	NR	3E-24		0.1221	[0.099-0.146] unit increase	Illumina [6720657] (imputed)	N
736	chr8	19821424	19821425	rs75278536	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting triglycerides levels in medium HDL	4,734 individuals	NA	8p21.3		rs75278536-G	0.117984103	2E-10		0.204061	[0.14-0.27] mmol/l decrease	Illumina [7701709] (imputed)	N
736	chr8	19821424	19821425	rs75278536	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(53:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs75278536-T	NR	3E-10		0.0509	[0.035-0.067] unit increase	Illumina [6720657] (imputed)	N
736	chr8	19821424	19821425	rs75278536	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs75278536-C	NR	3E-10		0.1041	[0.072-0.137] unit decrease	Illumina [6720657] (imputed)	N
736	chr8	19821424	19821425	rs75278536	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs75278536-G	NR	3E-10		0.0509	[0.035-0.067] unit increase	Illumina [6720657] (imputed)	N
736	chr8	19821424	19821425	rs75278536	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:1)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs75278536-A	NR	3E-10		0.0619	[0.043-0.081] unit increase	Illumina [6720657] (imputed)	N
736	chr8	19821781	19821782	rs77069344	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(53:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs77069344-G	NR	4E-10		0.0639	[0.044-0.084] unit increase	Illumina [6720657] (imputed)	N
736	chr8	19821781	19821782	rs77069344	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs77069344-G	NR	4E-10		0.0633	[0.044-0.083] unit increase	Illumina [6720657] (imputed)	N
736	chr8	19821781	19821782	rs77069344	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs77069344-G	NR	4E-10		0.0651	[0.045-0.085] unit decrease	Illumina [6720657] (imputed)	N
736	chr8	19821781	19821782	rs77069344	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:1)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs77069344-G	NR	4E-10		0.1041	[0.072-0.137] unit decrease	Illumina [6720657] (imputed)	N
736	chr8	19821781	19821782	rs77069344	30369316	Low-Kam C	2018-08-01	J Am Heart Assoc	Variants at the APOE /C1/C2/C4 Locus Modulate Cholesterol Efflux Capacity Independently of High-Density Lipoprotein Cholesterol.	Cholesterol efflux capacity	3,487 French-Canadian ancestry cases, 1,806 French-Canadian ancestry controls	NA	8p21.3	LPL	rs77069344-G	0.099	8E-10		0.2008	[0.14-0.26] unit increase	Illumina [at least 9000000] (imputed)	N
736	chr8	19822809	19822810	rs11570891	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(53:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs11570891-T	NR	1E-29		0.0805	[0.067-0.094] unit increase	Illumina [6720657] (imputed)	N
736	chr8	19822809	19822810	rs11570891	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_38:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs11570891-?	NR	4E-12		0.130054	[0.093-0.167] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19822809	19822810	rs11570891	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_36:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs11570891-?	NR	3E-12		0.127843	[0.092-0.164] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19822809	19822810	rs11570891	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_36:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs11570891-?	NR	2E-13		0.139248	[0.1-0.18] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19822809	19822810	rs11570891	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_36:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs11570891-?	NR	6E-14		0.138167	[0.1-0.17] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19822809	19822810	rs11570891	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_34:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs11570891-?	NR	3E-10		0.111195	[0.077-0.146] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19822809	19822810	rs11570891	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_34:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs11570891-?	NR	4E-11		0.126648	[0.089-0.164] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19822809	19822810	rs11570891	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_34:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs11570891-?	NR	6E-11		0.121589	[0.085-0.158] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19822809	19822810	rs11570891	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs11570891-C	NR	1E-29		0.0897	[0.074-0.105] unit decrease	Illumina [6720657] (imputed)	N
736	chr8	19822809	19822810	rs11570891	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:1_[M+H]1+/Phosphatidylethanolamine_37:1_[M+H]1+/Phosphatidate_39:2_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs11570891-?	NR	4E-11		0.124071	[0.087-0.161] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19822809	19822810	rs11570891	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:0_[M+H]1+/Phosphatidylethanolamine_37:0_[M+H]1+/Phosphatidate_39:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs11570891-?	NR	3E-10		0.117789	[0.081-0.155] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19822809	19822810	rs11570891	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_32:1_[M+H]1+/Phosphatidylcholine-P_32:0_[M+H]1+/Phosphatidylethanolamine-O_35:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs11570891-?	NR	5E-11		0.125119	[0.088-0.162] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19822809	19822810	rs11570891	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_44:7_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs11570891-?	NR	3E-11		0.122994	[0.087-0.159] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19822809	19822810	rs11570891	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_36:3_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs11570891-?	NR	2E-13		0.125974	[0.093-0.159] unit decrease	Affymetrix [87696910] (imputed)	N
736	chr8	19822809	19822810	rs11570891	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_36:2_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs11570891-?	NR	2E-11		0.113021	[0.08-0.146] unit decrease	Affymetrix [87696910] (imputed)	N
736	chr8	19822809	19822810	rs11570891	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_34:2_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs11570891-?	NR	2E-12		0.118242	[0.085-0.151] unit decrease	Affymetrix [87696910] (imputed)	N
736	chr8	19822809	19822810	rs11570891	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_34:1_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs11570891-?	NR	4E-10		0.107137	[0.074-0.141] unit decrease	Affymetrix [87696910] (imputed)	N
736	chr8	19822809	19822810	rs11570891	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs11570891-A	NR	1E-29		0.0758	[0.063-0.089] unit increase	Illumina [6720657] (imputed)	N
736	chr8	19822809	19822810	rs11570891	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:1)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs11570891-G	NR	1E-29		0.0938	[0.078-0.11] unit increase	Illumina [6720657] (imputed)	N
736	chr8	19822809	19822810	rs11570891	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Triacylglyceride levels	2,045 European ancestry individuals	NA	8p21.3	LPL	rs11570891-T	NR	3E-8	(TAG(52:3;0))	0.3336	[0.22-0.45] unit decrease	Illumina [~ 9300000] (imputed)	N
736	chr8	19823191	19823192	rs3289	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x short total sleep time interaction (2df test)	2,990 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,300 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, at least 11,842 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,350 European ancestry controls, 4,047 Hispanic/Latino controls	at least 220 African American short sleepers, 326 East Asian ancestry short sleepers, up to 5,288 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 1,292 East Asian ancestry controls, up to 20,844 European ancestry controls, 10,062 Hispanic controls	8p21.3	LPL	rs3289-?	NR	1E-15		0.05726	[0.042-0.073] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
736	chr8	19823191	19823192	rs3289	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x short total sleep time interaction (2df test)	3,007 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,474 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, up to 11,901 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,567 European ancestry controls, 4,047 Hispanic/Latino controls	up to 221 African American short sleepers, 629 East Asian ancestry short sleepers, up to 9,585 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 2,504 East Asian ancestry controls, up to 38,027 European ancestry controls, 10,061 Hispanic controls	8p21.3	LPL	rs3289-?	NR	1E-30		0.03598	[0.029-0.043] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
736	chr8	19823191	19823192	rs3289	31675503	Gurdasani D	2019-10-01	Cell	Uganda Genome Resource Enables Insights into Population History and Genomic Discovery in Africa.	Triglyceride levels	14,126 African ancestry individuals	NA	8p21.3		rs3289-T	0.884	1E-10		0.132678	unit decrease	Affymetrix, Illumina [at least 24423923] (imputed)	N
736	chr8	19823647	19823648	rs3208305	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	8p21.3	LPL	rs3208305-T	0.286165	3E-14		0.02237241	[0.017-0.028] unit increase	Affymetrix [93095623] (imputed)	N
736	chr8	19823647	19823648	rs3208305	32603185	Ibi D	2020-06-30	Circ Genom Precis Med	Genome-wide Association Study of the Postprandial Triglyceride Response Yields Common Genetic Variation in Hepatic Lipase (LIPC).	Postprandial triglyceride levels	5,630 individuals	NA	8p21.3	LPL	rs3208305-T	0.3	3E-28		0.22	[0.18-0.26] unit decrease	Illumina [NR] (imputed)	N
736	chr8	19823673	19823674	rs1803924	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(53:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs1803924-A	NR	9E-14		0.0874	[0.064-0.11] unit increase	Illumina [6720657] (imputed)	N
736	chr8	19823673	19823674	rs1803924	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs1803924-C	NR	9E-14		0.0919	[0.068-0.116] unit decrease	Illumina [6720657] (imputed)	N
736	chr8	19823673	19823674	rs1803924	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs1803924-T	NR	9E-14		0.1091	[0.08-0.138] unit increase	Illumina [6720657] (imputed)	N
736	chr8	19823673	19823674	rs1803924	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:1)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs1803924-A	NR	9E-14		0.0587	[0.043-0.074] unit increase	Illumina [6720657] (imputed)	N
736	chr8	19824044	19824045	rs3735964	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	8p21.3		rs3735964-A	NR	2E-15		0.0249	[0.019-0.031] unit decrease	Affymetrix, Illumina [20536605] (imputed)	N
736	chr8	19824044	19824045	rs3735964	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(53:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs3735964-G	NR	4E-12		0.1124	[0.081-0.144] unit decrease	Illumina [6720657] (imputed)	N
736	chr8	19824044	19824045	rs3735964	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs3735964-C	NR	4E-12		0.064	[0.046-0.082] unit increase	Illumina [6720657] (imputed)	N
736	chr8	19824044	19824045	rs3735964	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs3735964-G	NR	4E-12		0.0422	[0.03-0.054] unit decrease	Illumina [6720657] (imputed)	N
736	chr8	19824044	19824045	rs3735964	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:1)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs3735964-A	NR	4E-12		0.0604	[0.043-0.077] unit increase	Illumina [6720657] (imputed)	N
736	chr8	19824491	19824492	rs13702	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	8p21.3		rs13702-T	0.712165	2E-12		0.0321023	[0.023-0.041] unit decrease	NR [11722792] (imputed)	N
736	chr8	19824491	19824492	rs13702	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small LDL	115,082 European ancestry individuals	NA	8p21.3		rs13702-T	0.712157	1E-8		0.0261715	[0.017-0.035] unit increase	NR [11722792] (imputed)	N
736	chr8	19824491	19824492	rs13702	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of apolipoprotein B to apolipoprotein A1 levels	115,082 European ancestry individuals	NA	8p21.3		rs13702-T	0.712157	1E-58		0.0725508	[0.064-0.081] unit increase	NR [11722792] (imputed)	N
736	chr8	19824491	19824492	rs13702	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	8p21.3		rs13702-T	0.712605	4E-30		0.0521782	[0.043-0.061] unit increase	NR [11722792] (imputed)	N
736	chr8	19824491	19824492	rs13702	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	8p21.3		rs13702-T	0.712165	3E-14		0.034316	[0.025-0.043] unit increase	NR [11722792] (imputed)	N
736	chr8	19824491	19824492	rs13702	34841290	Ghodsian N	2021-11-03	Cell Rep Med	Electronic health record-based genome-wide meta-analysis provides insights on the genetic architecture of non-alcoholic fatty liver disease.	Nonalcoholic fatty liver disease	8,434 European ancestry cases, 770,180 European ancestry controls	NA	8p21.3	LPL	rs13702-?	NR	3E-9		0.0729432	[0.037-0.108] unit increase	NR [6787908] (imputed)	N
736	chr8	19824491	19824492	rs13702	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial mean diameter of VLDLD particles	4,348 individuals	NA	8p21.3		rs13702-C	0.300482751	2E-14		0.180227	[0.13-0.23] mmol/l decrease	Illumina [7701709] (imputed)	N
736	chr8	19824491	19824492	rs13702	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting triglycerides levels in small VLDL	4,734 individuals	NA	8p21.3		rs13702-C	0.299767083	3E-20		0.207239	[0.16-0.25] mmol/l decrease	Illumina [7701709] (imputed)	N
736	chr8	19824491	19824492	rs13702	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting mean diameter of VLDLD particles	4,734 individuals	NA	8p21.3		rs13702-C	0.299957541	4E-15		0.176439	[0.13-0.22] mmol/l decrease	Illumina [7701709] (imputed)	N
736	chr8	19824491	19824492	rs13702	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_53:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs13702-C	NR	7E-11		0.103806	[0.073-0.135] unit decrease	Affymetrix [87696910] (imputed)	N
736	chr8	19824491	19824492	rs13702	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_52:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs13702-C	NR	3E-11		0.107283	[0.076-0.139] unit decrease	Affymetrix [87696910] (imputed)	N
736	chr8	19824491	19824492	rs13702	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_52:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs13702-C	NR	2E-13		0.116809	[0.086-0.148] unit decrease	Affymetrix [87696910] (imputed)	N
736	chr8	19824491	19824492	rs13702	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_52:2_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs13702-C	NR	2E-10		0.10162	[0.07-0.133] unit decrease	Affymetrix [87696910] (imputed)	N
736	chr8	19824491	19824492	rs13702	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_51:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs13702-C	NR	3E-10		0.0998002	[0.069-0.131] unit decrease	Affymetrix [87696910] (imputed)	N
736	chr8	19824491	19824492	rs13702	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_46:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs13702-C	NR	5E-11		0.0978819	[0.069-0.127] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19824491	19824492	rs13702	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_40:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs13702-C	NR	7E-11		0.0977257	[0.068-0.127] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19824491	19824492	rs13702	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_38:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs13702-C	NR	1E-13		0.0947545	[0.07-0.12] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19824491	19824492	rs13702	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_34:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs13702-C	NR	6E-11		0.0784622	[0.055-0.102] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19824491	19824492	rs13702	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_34:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs13702-C	NR	3E-10		0.0797647	[0.055-0.105] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19824491	19824492	rs13702	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:1_[M+H]1+/Phosphatidylethanolamine_37:1_[M+H]1+/Phosphatidate_39:2_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs13702-C	NR	3E-13		0.0929832	[0.068-0.118] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19824491	19824492	rs13702	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:0_[M+H]1+/Phosphatidylethanolamine_37:0_[M+H]1+/Phosphatidate_39:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs13702-C	NR	3E-14		0.0964329	[0.071-0.121] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19824491	19824492	rs13702	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_34:3_[M+H]1+/Phosphatidylcholine-P_34:2_[M+H]1+/Phosphatidylethanolamine-P_37:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs13702-C	NR	4E-11		0.0866943	[0.061-0.112] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19824491	19824492	rs13702	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_34:1_[M+H]1+/Phosphatidylcholine-P_34:0_[M+H]1+/Phosphatidylethanolamine-O_37:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs13702-C	NR	1E-12		0.0885695	[0.064-0.113] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19824491	19824492	rs13702	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_32:1_[M+H]1+/Phosphatidylcholine-P_32:0_[M+H]1+/Phosphatidylethanolamine-O_35:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs13702-C	NR	6E-13		0.092864	[0.068-0.118] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19824491	19824492	rs13702	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine_16:1_[M+H]1+/Lysophosphatidylethanolamine_19:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs13702-C	NR	2E-10		0.075951	[0.053-0.099] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19824491	19824492	rs13702	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_44:7_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs13702-C	NR	2E-10		0.0797921	[0.055-0.104] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19824491	19824492	rs13702	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_36:4_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs13702-C	NR	2E-10		0.0749471	[0.052-0.098] unit decrease	Affymetrix [87696910] (imputed)	N
736	chr8	19824491	19824492	rs13702	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_36:3_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs13702-C	NR	4E-15		0.091091	[0.068-0.114] unit decrease	Affymetrix [87696910] (imputed)	N
736	chr8	19824491	19824492	rs13702	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_36:2_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs13702-C	NR	3E-13		0.0832395	[0.061-0.106] unit decrease	Affymetrix [87696910] (imputed)	N
736	chr8	19824491	19824492	rs13702	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_34:2_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs13702-C	NR	7E-14		0.0853067	[0.063-0.108] unit decrease	Affymetrix [87696910] (imputed)	N
736	chr8	19824491	19824492	rs13702	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_34:1_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs13702-C	NR	2E-11		0.0783039	[0.056-0.101] unit decrease	Affymetrix [87696910] (imputed)	N
736	chr8	19824491	19824492	rs13702	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	8p21.3	LPL	rs13702-?	NR	4E-17		0.0470828	[0.036-0.058] unit decrease	Illumina [4804024] (imputed)	N
736	chr8	19824491	19824492	rs13702	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	8p21.3	LPL	rs13702-C	0.286535	3E-23		0.024628825	[0.02-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
736	chr8	19824491	19824492	rs13702	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	8p21.3	LPL	rs13702-C	0.286544	1E-25		0.026005788	[0.021-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
736	chr8	19824491	19824492	rs13702	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	8p21.3	LPL	rs13702-C	0.286641	3E-12		0.017247882	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
736	chr8	19824491	19824492	rs13702	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	8p21.3	LPL	rs13702-C	0.286646	6E-14		0.018589545	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
736	chr8	19824491	19824492	rs13702	32226016	Hu Y	2020-03-30	PLoS Genet	Minority-centric meta-analyses of blood lipid levels identify novel loci in the Population Architecture using Genomics and Epidemiology (PAGE) study.	High density lipoprotein cholesterol levels	17,641 African American individuals, 22,830 Hispanics ancestry individuals, 2,378 East Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals, 22,887 European ancestry individuals	up to 71,987 African American individuals, up to 34,899 Hispanics ancestry individuals, up to 315,133 European ancestry individuals, up to 9,593 Asian ancestry individuals, up to 94,674 European ancestry, East Asian ancestry, African American, South Asian ancestry, Hispanic individuals	8p21.3		rs13702-?	NR	9E-41		0.111	[0.095-0.127] mg/dL increase	Affymetrix, Illumina [NR] (imputed)	N
736	chr8	19824491	19824492	rs13702	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	8p21.3	LPL	rs13702-T	0.71209	1E-38		0.0298366	[0.025-0.034] unit increase	Affymetrix [NR] (imputed)	N
736	chr8	19824491	19824492	rs13702	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	8p21.3	LPL	rs13702-?	NR	1E-21		0.027	[0.022-0.032] unit decrease	Affymetrix [5701386] (imputed)	N
736	chr8	19824491	19824492	rs13702	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x short total sleep time interaction (2df test)	3,007 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,474 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, up to 11,901 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,567 European ancestry controls, 4,047 Hispanic/Latino controls	up to 221 African American short sleepers, 629 East Asian ancestry short sleepers, up to 9,585 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 2,504 East Asian ancestry controls, up to 38,027 European ancestry controls, 10,061 Hispanic controls	8p21.3	LPL	rs13702-?	NR	2E-112		0.02357	[0.021-0.026] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
736	chr8	19824491	19824492	rs13702	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	8p21.3	LPL	rs13702-?	NR	5E-10	(M_VLDL_C)	0.06753076	NR unit decrease	Illumina [609262]	N
736	chr8	19824491	19824492	rs13702	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	8p21.3	LPL	rs13702-?	NR	3E-17	(Serum_TG)	0.06993133	NR unit decrease	Illumina [609262]	N
736	chr8	19824491	19824492	rs13702	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	8p21.3	LPL	rs13702-?	NR	3E-14	(XS_VLDL_TG)	0.07482022	NR unit decrease	Illumina [609262]	N
736	chr8	19824491	19824492	rs13702	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	8p21.3	LPL	rs13702-?	NR	3E-14	(M_VLDL_PL)	0.073120825	NR unit decrease	Illumina [609262]	N
736	chr8	19824491	19824492	rs13702	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	8p21.3	LPL	rs13702-?	NR	2E-12	(S_VLDL_PL)	0.0790237	NR unit decrease	Illumina [609262]	N
736	chr8	19824491	19824492	rs13702	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	8p21.3	LPL	rs13702-?	NR	1E-14	(TotFA)	0.050985143	NR unit decrease	Illumina [609262]	N
736	chr8	19824491	19824492	rs13702	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	8p21.3	LPL	rs13702-?	NR	1E-13	(S_VLDL_P)	0.0766844	NR unit decrease	Illumina [609262]	N
736	chr8	19824491	19824492	rs13702	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	8p21.3	LPL	rs13702-?	NR	1E-11	(L_VLDL_P)	0.065329224	NR unit decrease	Illumina [609262]	N
736	chr8	19824491	19824492	rs13702	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	8p21.3	LPL	rs13702-?	NR	8E-12	(XS_VLDL_TG)	0.08597799	NR unit decrease	Illumina [609262]	N
736	chr8	19824491	19824492	rs13702	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	8p21.3	LPL	rs13702-?	NR	8E-12	(Serum_TG)	0.0856818	NR unit decrease	Illumina [609262]	N
736	chr8	19824491	19824492	rs13702	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	8p21.3	LPL	rs13702-?	NR	7E-12	(S_VLDL_P)	0.08594051	NR unit decrease	Illumina [609262]	N
736	chr8	19824491	19824492	rs13702	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	8p21.3	LPL	rs13702-?	NR	6E-7	(M_VLDL_C)	0.073021695	NR unit decrease	Illumina [609262]	N
736	chr8	19824491	19824492	rs13702	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	8p21.3	LPL	rs13702-?	NR	4E-10	(S_VLDL_PL)	0.077991076	NR unit decrease	Illumina [609262]	N
736	chr8	19824491	19824492	rs13702	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	8p21.3	LPL	rs13702-?	NR	3E-9	(L_VLDL_P)	0.07381657	NR unit decrease	Illumina [609262]	N
736	chr8	19824491	19824492	rs13702	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	8p21.3	LPL	rs13702-?	NR	2E-11	(M_VLDL_PL)	0.084010035	NR unit decrease	Illumina [609262]	N
736	chr8	19824491	19824492	rs13702	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p21.3	NR	rs13702-T	NR	5E-177		0.115	unit increase	Affymetrix [at least 7091467] (imputed)	N
736	chr8	19824491	19824492	rs13702	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p21.3	NR	rs13702-T	0.803	4E-12	(East Asian)	0.126	unit increase	Affymetrix [at least 7091467] (imputed)	N
736	chr8	19824491	19824492	rs13702	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p21.3	NR	rs13702-T	0.704	6E-17	(Hispanic)	0.124	unit increase	Affymetrix [at least 7091467] (imputed)	N
736	chr8	19824491	19824492	rs13702	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p21.3	NR	rs13702-T	0.7	1E-146	(EA)	0.115	unit increase	Affymetrix [at least 7091467] (imputed)	N
736	chr8	19824491	19824492	rs13702	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p21.3	NR	rs13702-T	0.501	8E-6	(AA)	0.1	unit increase	Affymetrix [at least 7091467] (imputed)	N
736	chr8	19824491	19824492	rs13702	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p21.3	NR	rs13702-T	NR	1E-139		0.094	unit decrease	Affymetrix [at least 7091467] (imputed)	N
736	chr8	19824491	19824492	rs13702	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p21.3	NR	rs13702-T	0.803	1E-10	(East Asian)	0.109	unit decrease	Affymetrix [at least 7091467] (imputed)	N
736	chr8	19824491	19824492	rs13702	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p21.3	NR	rs13702-T	0.704	1E-16	(Hispanic)	0.111	unit decrease	Affymetrix [at least 7091467] (imputed)	N
736	chr8	19824491	19824492	rs13702	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p21.3	NR	rs13702-T	0.7	2E-111	(EA)	0.091	unit decrease	Affymetrix [at least 7091467] (imputed)	N
736	chr8	19824491	19824492	rs13702	21386085	Kraja AT	2011-03-08	Diabetes	A bivariate genome-wide approach to metabolic syndrome: STAMPEED consortium.	HDL Cholesterol - Triglycerides (HDLC-TG)	22,161 European ancestry individuals	NA	8p21.3	LPL	rs13702-A	NR	1E-16		0.29	[0.23-0.35] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
736	chr8	19824562	19824563	rs1059611	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial very large HDL particle concentration	4,348 individuals	NA	8p21.3		rs1059611-C	0.120934049	2E-8		0.189555	[0.12-0.26] mmol/l increase	Illumina [7701709] (imputed)	N
736	chr8	19824562	19824563	rs1059611	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial triglycerides levels in chylomicrons and extremely large VLDL	4,348 individuals	NA	8p21.3		rs1059611-C	0.116917705	4E-14		0.259446	[0.19-0.33] mmol/l decrease	Illumina [7701709] (imputed)	N
736	chr8	19824562	19824563	rs1059611	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total lipids in very large HDL	4,348 individuals	NA	8p21.3		rs1059611-C	0.120934049	2E-8		0.190131	[0.12-0.26] mmol/l increase	Illumina [7701709] (imputed)	N
736	chr8	19824562	19824563	rs1059611	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total lipids in chylomicrons and extremely large VLDL	4,348 individuals	NA	8p21.3		rs1059611-C	0.116917705	4E-14		0.259783	[0.19-0.33] mmol/l decrease	Illumina [7701709] (imputed)	N
736	chr8	19824562	19824563	rs1059611	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial free cholesterol in chylomicrons and extremely large VLDL	4,348 individuals	NA	8p21.3		rs1059611-C	0.116917705	8E-15		0.266622	[0.2-0.33] mmol/l decrease	Illumina [7701709] (imputed)	N
736	chr8	19824562	19824563	rs1059611	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial chylomicrons and extremely large VLDL particle concentration	4,348 individuals	NA	8p21.3		rs1059611-C	0.116917705	4E-14		0.259352	[0.19-0.33] mmol/l decrease	Illumina [7701709] (imputed)	N
736	chr8	19824562	19824563	rs1059611	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting very large VLDL particle concentration	4,734 individuals	NA	8p21.3		rs1059611-C	0.113490644	7E-13		0.252714	[0.18-0.32] mmol/l decrease	Illumina [7701709] (imputed)	N
736	chr8	19824562	19824563	rs1059611	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting triglycerides levels in very large VLDL	4,734 individuals	NA	8p21.3		rs1059611-C	0.113490644	3E-13		0.256099	[0.19-0.32] mmol/l decrease	Illumina [7701709] (imputed)	N
736	chr8	19824562	19824563	rs1059611	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting triglycerides levels in large VLDL	4,734 individuals	NA	8p21.3		rs1059611-C	0.116812404	3E-15		0.260197	[0.2-0.32] mmol/l decrease	Illumina [7701709] (imputed)	N
736	chr8	19824562	19824563	rs1059611	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total lipids in very large VLDL	4,734 individuals	NA	8p21.3		rs1059611-C	0.113490644	8E-13		0.251592	[0.18-0.32] mmol/l decrease	Illumina [7701709] (imputed)	N
736	chr8	19824562	19824563	rs1059611	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total lipids in large VLDL	4,734 individuals	NA	8p21.3		rs1059611-C	0.116812404	2E-15		0.260731	[0.2-0.33] mmol/l decrease	Illumina [7701709] (imputed)	N
736	chr8	19824562	19824563	rs1059611	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total cholesterol in very large VLDL	4,734 individuals	NA	8p21.3		rs1059611-C	0.113490644	6E-12		0.242054	[0.17-0.31] mmol/l decrease	Illumina [7701709] (imputed)	N
736	chr8	19824562	19824563	rs1059611	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting phospholipid levels in very large VLDL	4,734 individuals	NA	8p21.3		rs1059611-C	0.113490644	7E-12		0.241177	[0.17-0.31] mmol/l decrease	Illumina [7701709] (imputed)	N
736	chr8	19824562	19824563	rs1059611	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting phospholipid levels in large VLDL	4,734 individuals	NA	8p21.3		rs1059611-C	0.116812404	3E-15		0.259982	[0.2-0.32] mmol/l decrease	Illumina [7701709] (imputed)	N
736	chr8	19824562	19824563	rs1059611	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting large VLDL particle concentration	4,734 individuals	NA	8p21.3		rs1059611-C	0.116812404	2E-15		0.260845	[0.2-0.33] mmol/l decrease	Illumina [7701709] (imputed)	N
736	chr8	19824562	19824563	rs1059611	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting free cholesterol in very large VLDL	4,734 individuals	NA	8p21.3		rs1059611-C	0.113490644	2E-11		0.234938	[0.17-0.3] mmol/l decrease	Illumina [7701709] (imputed)	N
736	chr8	19824562	19824563	rs1059611	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting free cholesterol in large VLDL	4,734 individuals	NA	8p21.3		rs1059611-C	0.116812404	5E-15		0.257835	[0.19-0.32] mmol/l decrease	Illumina [7701709] (imputed)	N
736	chr8	19824562	19824563	rs1059611	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting cholesterol esters in very large VLDL	4,734 individuals	NA	8p21.3		rs1059611-C	0.113490644	2E-12		0.248722	[0.18-0.32] mmol/l decrease	Illumina [7701709] (imputed)	N
736	chr8	19824562	19824563	rs1059611	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(53:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs1059611-T	NR	3E-36		0.1462	[0.12-0.17] unit decrease	Illumina [6720657] (imputed)	N
736	chr8	19824562	19824563	rs1059611	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs1059611-C	NR	3E-36		0.1462	[0.12-0.17] unit decrease	Illumina [6720657] (imputed)	N
736	chr8	19824562	19824563	rs1059611	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs1059611-C	NR	3E-36		0.1462	[0.12-0.17] unit decrease	Illumina [6720657] (imputed)	N
736	chr8	19824562	19824563	rs1059611	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs1059611-C	NR	2E-36		0.0862	[0.073-0.1] unit increase	Illumina [6720657] (imputed)	N
736	chr8	19824562	19824563	rs1059611	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:1)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs1059611-T	NR	3E-36		0.0861	[0.073-0.099] unit increase	Illumina [6720657] (imputed)	N
736	chr8	19824562	19824563	rs1059611	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Triglyceride levels	105,597 Japanese ancestry individuals	NA	8p21.3	LPL	rs1059611-?	NR	1E-154		0.1698	[0.16-0.18] unit decrease novel	Illumina [6108953] (imputed)	N
736	chr8	19824562	19824563	rs1059611	19936222	Chasman DI	2009-11-20	PLoS Genet	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry female individuals	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	8p21.3	LPL	rs1059611-?	NR	2E-17	(TG.by.NMR, fasting)	0.065	[NR] unit decrease	Illumina [335603]	N
736	chr8	19824562	19824563	rs1059611	19936222	Chasman DI	2009-11-20	PLoS Genet	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry female individuals	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	8p21.3	LPL	rs1059611-?	NR	1E-20	(VLDL.medium, fasting)	2.875	[NR] unit decrease	Illumina [335603]	N
736	chr8	19824626	19824626	rs10645926	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	111,667 East Asian ancestry individuals	NA	8p21.3		rs10645926-CTT	0.125892	5E-165		0.164364	[0.15-0.18] unit decrease	Illumina [13471903] (imputed)	N
736	chr8	19824666	19824667	rs15285	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large LDL	115,082 European ancestry individuals	NA	8p21.3		rs15285-C	0.713474	9E-65		0.0759528	[0.067-0.085] unit increase	NR [11722792] (imputed)	N
736	chr8	19824666	19824667	rs15285	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium HDL	115,082 European ancestry individuals	NA	8p21.3		rs15285-C	0.713474	4E-83		0.0817955	[0.073-0.09] unit decrease	NR [11722792] (imputed)	N
736	chr8	19824666	19824667	rs15285	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in HDL	115,082 European ancestry individuals	NA	8p21.3		rs15285-C	0.713474	5E-98		0.0861023	[0.078-0.094] unit decrease	NR [11722792] (imputed)	N
736	chr8	19824666	19824667	rs15285	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total concentration of lipoprotein particles	115,082 European ancestry individuals	NA	8p21.3		rs15285-C	0.713474	4E-65		0.073236	[0.065-0.082] unit decrease	NR [11722792] (imputed)	N
736	chr8	19824666	19824667	rs15285	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	8p21.3		rs15285-C	0.713474	9E-126		0.106196	[0.097-0.115] unit increase	NR [11722792] (imputed)	N
736	chr8	19824666	19824667	rs15285	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	8p21.3		rs15285-C	0.7143	1E-55		0.0719734	[0.063-0.081] unit increase	NR [11722792] (imputed)	N
736	chr8	19824666	19824667	rs15285	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium HDL	115,082 European ancestry individuals	NA	8p21.3		rs15285-C	0.713474	9E-67		0.0736177	[0.065-0.082] unit decrease	NR [11722792] (imputed)	N
736	chr8	19824666	19824667	rs15285	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in HDL	115,082 European ancestry individuals	NA	8p21.3		rs15285-C	0.713474	3E-86		0.0811327	[0.073-0.089] unit decrease	NR [11722792] (imputed)	N
736	chr8	19824666	19824667	rs15285	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	8p21.3		rs15285-C	0.713474	7E-99		0.0876187	[0.079-0.096] unit decrease	NR [11722792] (imputed)	N
736	chr8	19824666	19824667	rs15285	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in HDL	115,082 European ancestry individuals	NA	8p21.3		rs15285-C	0.713474	1E-96		0.0843391	[0.076-0.092] unit decrease	NR [11722792] (imputed)	N
736	chr8	19824666	19824667	rs15285	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium HDL particles	115,082 European ancestry individuals	NA	8p21.3		rs15285-C	0.713474	6E-94		0.0864395	[0.078-0.095] unit decrease	NR [11722792] (imputed)	N
736	chr8	19824666	19824667	rs15285	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of HDL particles	115,082 European ancestry individuals	NA	8p21.3		rs15285-C	0.713474	4E-81		0.081838	[0.073-0.09] unit decrease	NR [11722792] (imputed)	N
736	chr8	19824666	19824667	rs15285	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium HDL	115,082 European ancestry individuals	NA	8p21.3		rs15285-C	0.713474	4E-137		0.105123	[0.097-0.113] unit decrease	NR [11722792] (imputed)	N
736	chr8	19824666	19824667	rs15285	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	8p21.3		rs15285-C	0.713474	1E-21		0.0438072	[0.035-0.053] unit decrease	NR [11722792] (imputed)	N
736	chr8	19824666	19824667	rs15285	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	8p21.3		rs15285-C	0.713474	2E-130		0.10211	[0.094-0.11] unit decrease	NR [11722792] (imputed)	N
736	chr8	19824666	19824667	rs15285	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein A1 levels	115,082 European ancestry individuals	NA	8p21.3		rs15285-C	0.713474	1E-85		0.0819345	[0.074-0.09] unit decrease	NR [11722792] (imputed)	N
736	chr8	19824666	19824667	rs15285	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total lipids in medium HDL	4,348 individuals	NA	8p21.3		rs15285-T	0.299172533	2E-12		0.165938	[0.12-0.21] mmol/l increase	Illumina [7701709] (imputed)	N
736	chr8	19824666	19824667	rs15285	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total cholesterol in medium HDL	4,348 individuals	NA	8p21.3		rs15285-T	0.299172533	7E-15		0.183179	[0.14-0.23] mmol/l increase	Illumina [7701709] (imputed)	N
736	chr8	19824666	19824667	rs15285	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial phospholipid levels in medium HDL	4,348 individuals	NA	8p21.3		rs15285-T	0.299172533	5E-12		0.162458	[0.12-0.21] mmol/l increase	Illumina [7701709] (imputed)	N
736	chr8	19824666	19824667	rs15285	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial medium HDL particle concentration	4,348 individuals	NA	8p21.3		rs15285-T	0.299172533	1E-11		0.160245	[0.11-0.21] mmol/l increase	Illumina [7701709] (imputed)	N
736	chr8	19824666	19824667	rs15285	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial free cholesterol in medium HDL	4,348 individuals	NA	8p21.3		rs15285-T	0.299172533	1E-14		0.182135	[0.14-0.23] mmol/l increase	Illumina [7701709] (imputed)	N
736	chr8	19824666	19824667	rs15285	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial cholesterol esters in medium HDL	4,348 individuals	NA	8p21.3		rs15285-T	0.299172533	8E-15		0.182657	[0.14-0.23] mmol/l increase	Illumina [7701709] (imputed)	N
736	chr8	19824666	19824667	rs15285	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial apolipoprotein A-I	4,348 individuals	NA	8p21.3		rs15285-T	0.299103726	2E-8		0.132809	[0.087-0.179] mmol/l increase	Illumina [7701709] (imputed)	N
736	chr8	19824666	19824667	rs15285	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total lipids in medium HDL	4,734 individuals	NA	8p21.3		rs15285-T	0.298856083	3E-9		0.133507	[0.089-0.178] mmol/l increase	Illumina [7701709] (imputed)	N
736	chr8	19824666	19824667	rs15285	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting phospholipid levels in medium HDL	4,734 individuals	NA	8p21.3		rs15285-T	0.298856083	1E-8		0.128135	[0.084-0.172] mmol/l increase	Illumina [7701709] (imputed)	N
736	chr8	19824666	19824667	rs15285	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting medium HDL particle concentration	4,734 individuals	NA	8p21.3		rs15285-T	0.298856083	1E-8		0.128381	[0.084-0.173] mmol/l increase	Illumina [7701709] (imputed)	N
736	chr8	19824666	19824667	rs15285	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting free cholesterol in medium HDL	4,734 individuals	NA	8p21.3		rs15285-T	0.298856083	8E-11		0.146642	[0.1-0.19] mmol/l increase	Illumina [7701709] (imputed)	N
736	chr8	19824666	19824667	rs15285	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	8p21.3		rs15285-T	NR	3E-576		0.1194	[0.11-0.12] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
736	chr8	19824666	19824667	rs15285	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_53:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs15285-T	NR	2E-10		0.101737	[0.071-0.133] unit decrease	Affymetrix [87696910] (imputed)	N
736	chr8	19824666	19824667	rs15285	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_52:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs15285-T	NR	1E-11		0.109322	[0.078-0.141] unit decrease	Affymetrix [87696910] (imputed)	N
736	chr8	19824666	19824667	rs15285	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_52:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs15285-T	NR	2E-13		0.116728	[0.086-0.148] unit decrease	Affymetrix [87696910] (imputed)	N
736	chr8	19824666	19824667	rs15285	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_52:2_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs15285-T	NR	3E-10		0.100207	[0.069-0.131] unit decrease	Affymetrix [87696910] (imputed)	N
736	chr8	19824666	19824667	rs15285	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_46:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs15285-T	NR	1E-11		0.101034	[0.072-0.13] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19824666	19824667	rs15285	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_40:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs15285-T	NR	1E-11		0.101008	[0.072-0.13] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19824666	19824667	rs15285	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_38:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs15285-T	NR	4E-14		0.0962112	[0.071-0.121] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19824666	19824667	rs15285	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_34:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs15285-T	NR	5E-11		0.0788278	[0.055-0.102] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19824666	19824667	rs15285	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_34:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs15285-T	NR	2E-10		0.0802202	[0.056-0.105] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19824666	19824667	rs15285	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:1_[M+H]1+/Phosphatidylethanolamine_37:1_[M+H]1+/Phosphatidate_39:2_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs15285-T	NR	1E-12		0.0905636	[0.066-0.116] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19824666	19824667	rs15285	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:0_[M+H]1+/Phosphatidylethanolamine_37:0_[M+H]1+/Phosphatidate_39:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs15285-T	NR	1E-13		0.0942084	[0.069-0.119] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19824666	19824667	rs15285	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_36:4_[M+H]1+/Phosphatidylcholine-P_36:3_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs15285-T	NR	3E-10		0.0829364	[0.057-0.109] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19824666	19824667	rs15285	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_34:3_[M+H]1+/Phosphatidylcholine-P_34:2_[M+H]1+/Phosphatidylethanolamine-P_37:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs15285-T	NR	4E-11		0.0864822	[0.061-0.112] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19824666	19824667	rs15285	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_34:1_[M+H]1+/Phosphatidylcholine-P_34:0_[M+H]1+/Phosphatidylethanolamine-O_37:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs15285-T	NR	6E-13		0.0891763	[0.065-0.113] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19824666	19824667	rs15285	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_32:1_[M+H]1+/Phosphatidylcholine-P_32:0_[M+H]1+/Phosphatidylethanolamine-O_35:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs15285-T	NR	4E-13		0.0934852	[0.068-0.119] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19824666	19824667	rs15285	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_44:7_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs15285-T	NR	2E-10		0.0802499	[0.056-0.105] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19824666	19824667	rs15285	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_36:4_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs15285-T	NR	6E-11		0.0768112	[0.054-0.1] unit decrease	Affymetrix [87696910] (imputed)	N
736	chr8	19824666	19824667	rs15285	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_36:3_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs15285-T	NR	3E-15		0.0914561	[0.069-0.114] unit decrease	Affymetrix [87696910] (imputed)	N
736	chr8	19824666	19824667	rs15285	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_36:2_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs15285-T	NR	4E-13		0.08266	[0.06-0.105] unit decrease	Affymetrix [87696910] (imputed)	N
736	chr8	19824666	19824667	rs15285	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_34:2_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs15285-T	NR	4E-14		0.0860777	[0.064-0.108] unit decrease	Affymetrix [87696910] (imputed)	N
736	chr8	19824666	19824667	rs15285	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_34:1_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs15285-T	NR	2E-11		0.0777581	[0.055-0.1] unit decrease	Affymetrix [87696910] (imputed)	N
736	chr8	19824666	19824667	rs15285	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	8p21.3	LPL	rs15285-?	NR	2E-459		0.1223	[0.12-0.13] unit decrease	Affymetrix [5701386] (imputed)	N
736	chr8	19824666	19824667	rs15285	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x long total sleep time interaction (2df test)	2,933 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, up to 7,870 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,975 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 32,171 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 616 East Asian ancestry long sleepers, up to 9,486 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 929 African American controls, 2,517 East Asian ancestry controls, up to 38,126 European ancestry controls, 10,063 Hispanic controls	8p21.3	LPL	rs15285-?	NR	7E-126		0.02406	[0.022-0.026] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
736	chr8	19824666	19824667	rs15285	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	8p21.3	LPL	rs15285-?	NR	1E-14	(VLDL_TG)	0.08341065	NR unit decrease	Illumina [609262]	N
736	chr8	19824666	19824667	rs15285	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	8p21.3	LPL	rs15285-?	NR	9E-12	(VLDL_TG)	0.08500996	NR unit decrease	Illumina [609262]	N
736	chr8	19824666	19824667	rs15285	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (father's age at death or father's attained age)	up to 699,000 European ancestry individuals	NA	8p21.3	NR	rs15285-G		8E-10				Illumina [458865]	N
736	chr8	19824666	19824667	rs15285	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	8p21.3	NR	rs15285-?	NR	6E-40		0.05650247	[0.048-0.065] unit decrease	Illumina [31978265] (imputed)	N
736	chr8	19824666	19824667	rs15285	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	8p21.3	NR	rs15285-?	NR	5E-40		1.587487	[1.35-1.82] unit increase	Illumina [31978362] (imputed)	N
736	chr8	19824666	19824667	rs15285	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls	NA	8p21.3	LPL	rs15285-T	0.28486	3E-21		0.058676165	[0.047-0.071] unit decrease	Affymetrix [7288503] (imputed)	N
736	chr8	19824666	19824667	rs15285	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	8p21.3	NR	rs15285-C	0.74	4E-8		0.011	[0.0071-0.0149] unit increase	Affymetrix [2446094] (imputed)	N
736	chr8	19824666	19824667	rs15285	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	8p21.3	NR	rs15285-C	0.74	5E-8				Affymetrix [2446094] (imputed)	N
736	chr8	19824666	19824667	rs15285	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	8p21.3	NA	rs15285-T	0.2629	2E-9		0.0117	[0.008-0.0154] unit decrease	NR [~ 27400000] (imputed)	N
736	chr8	19824666	19824667	rs15285	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p21.3	NR	rs15285-C	NR	1E-177		0.116	unit increase	Affymetrix [at least 7091467] (imputed)	N
736	chr8	19824666	19824667	rs15285	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p21.3	NR	rs15285-C	0.803	5E-12	(East Asian)	0.126	unit increase	Affymetrix [at least 7091467] (imputed)	N
736	chr8	19824666	19824667	rs15285	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p21.3	NR	rs15285-C	0.705	1E-17	(Hispanic)	0.127	unit increase	Affymetrix [at least 7091467] (imputed)	N
736	chr8	19824666	19824667	rs15285	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p21.3	NR	rs15285-C	0.7	9E-147	(EA)	0.116	unit increase	Affymetrix [at least 7091467] (imputed)	N
736	chr8	19824666	19824667	rs15285	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p21.3	NR	rs15285-C	0.505	8E-6	(AA)	0.1	unit increase	Affymetrix [at least 7091467] (imputed)	N
736	chr8	19824666	19824667	rs15285	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p21.3	NR	rs15285-C	NR	3E-139		0.094	unit decrease	Affymetrix [at least 7091467] (imputed)	N
736	chr8	19824666	19824667	rs15285	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p21.3	NR	rs15285-C	0.803	1E-10	(East Asian)	0.109	unit decrease	Affymetrix [at least 7091467] (imputed)	N
736	chr8	19824666	19824667	rs15285	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p21.3	NR	rs15285-C	0.705	1E-16	(Hispanic)	0.111	unit decrease	Affymetrix [at least 7091467] (imputed)	N
736	chr8	19824666	19824667	rs15285	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p21.3	NR	rs15285-C	0.7	1E-110	(EA)	0.091	unit decrease	Affymetrix [at least 7091467] (imputed)	N
736	chr8	19824666	19824667	rs15285	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	8p21.3	LPL	rs15285-T	0.29	8E-14		0.052	[0.038-0.066] unit decrease	Affymetrix [7947838] (imputed)	N
736	chr8	19824666	19824667	rs15285	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	HDL cholesterol	19,223 British ancestry individuals from 6863 families.	NA	8p21.3	LPL	rs15285-T	0.2675	1E-18		0.109238155	[0.085-0.134] mg/dl increase	Illumina [24111857] (imputed)	N
736	chr8	19824666	19824667	rs15285	21386085	Kraja AT	2011-03-08	Diabetes	A bivariate genome-wide approach to metabolic syndrome: STAMPEED consortium.	Triglycerides-Blood Pressure (TG-BP)	22,161 European ancestry individuals	NA	8p21.3	LPL	rs15285-A	NR	1E-10		0.27	[0.19-0.35] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
736	chr8	19824867	19824868	rs3916027	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting triglycerides levels in medium VLDL	4,734 individuals	NA	8p21.3		rs3916027-A	0.279995772	2E-19		0.207838	[0.16-0.25] mmol/l decrease	Illumina [7701709] (imputed)	N
736	chr8	19824867	19824868	rs3916027	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting triglycerides in VLDL	4,734 individuals	NA	8p21.3		rs3916027-A	0.279970427	2E-19		0.207064	[0.16-0.25] mmol/l decrease	Illumina [7701709] (imputed)	N
736	chr8	19824867	19824868	rs3916027	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total lipids in medium VLDL	4,734 individuals	NA	8p21.3		rs3916027-A	0.279995772	8E-20		0.20947	[0.16-0.25] mmol/l decrease	Illumina [7701709] (imputed)	N
736	chr8	19824867	19824868	rs3916027	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total cholesterol in medium VLDL	4,734 individuals	NA	8p21.3		rs3916027-A	0.279995772	1E-19		0.208128	[0.16-0.25] mmol/l decrease	Illumina [7701709] (imputed)	N
736	chr8	19824867	19824868	rs3916027	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting phospholipid levels in medium VLDL	4,734 individuals	NA	8p21.3		rs3916027-A	0.279995772	9E-20		0.209292	[0.16-0.25] mmol/l decrease	Illumina [7701709] (imputed)	N
736	chr8	19824867	19824868	rs3916027	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting medium VLDL particle concentration	4,734 individuals	NA	8p21.3		rs3916027-A	0.279995772	9E-20		0.20919	[0.16-0.25] mmol/l decrease	Illumina [7701709] (imputed)	N
736	chr8	19824867	19824868	rs3916027	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting cholesterol esters in medium VLDL	4,734 individuals	NA	8p21.3		rs3916027-A	0.279995772	2E-18		0.201382	[0.16-0.25] mmol/l decrease	Illumina [7701709] (imputed)	N
736	chr8	19824867	19824868	rs3916027	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8p21.3	NR	rs3916027-G	0.732721	9E-14				Affymetrix, Illumina [17210439] (imputed)	N
736	chr8	19824867	19824868	rs3916027	32603185	Ibi D	2020-06-30	Circ Genom Precis Med	Genome-wide Association Study of the Postprandial Triglyceride Response Yields Common Genetic Variation in Hepatic Lipase (LIPC).	Fasting triglyceride levels	5,630 individuals	NA	8p21.3	LPL	rs3916027-A	0.28	1E-23		0.21	[0.17-0.25] unit decrease	Illumina [NR] (imputed)	N
736	chr8	19824895	19824896	rs9644636	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x long total sleep time interaction (2df test)	at least 2,926 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, at least 7,664 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,906 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 31,986 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 317 East Asian ancestry long sleepers, up to 5,171 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 928 African American controls, 1,301 East Asian ancestry controls, up to 20,961 European ancestry controls, 10,064 Hispanic controls	8p21.3	LPL	rs9644636-?	NR	1E-13		0.01697	[0.012-0.022] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
736	chr8	19825296	19825297	rs80085105	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	8p21.3		rs80085105-T	0.99086	8E-9		0.126658	[0.084-0.17] unit decrease	NR [11722792] (imputed)	N
736	chr8	19825296	19825297	rs80085105	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	8p21.3		rs80085105-T	0.99086	3E-8		0.12286	[0.08-0.166] unit decrease	NR [11722792] (imputed)	N
736	chr8	19825296	19825297	rs80085105	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	8p21.3		rs80085105-T	0.99086	2E-9		0.130243	[0.088-0.173] unit decrease	NR [11722792] (imputed)	N
736	chr8	19825296	19825297	rs80085105	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	8p21.3		rs80085105-T	0.990862	4E-9		0.126242	[0.084-0.168] unit decrease	NR [11722792] (imputed)	N
736	chr8	19825296	19825297	rs80085105	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	HDL cholesterol levels	115,082 European ancestry individuals	NA	8p21.3		rs80085105-T	0.99086	2E-8		0.116788	[0.076-0.157] unit increase	NR [11722792] (imputed)	N
736	chr8	19825296	19825297	rs80085105	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	8p21.3		rs80085105-T	0.99086	9E-9		0.119676	[0.079-0.16] unit increase	NR [11722792] (imputed)	N
736	chr8	19826301	19826302	rs77150190	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(53:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs77150190-T	NR	4E-10		0.0574	[0.039-0.075] unit increase	Illumina [6720657] (imputed)	N
736	chr8	19826317	19826318	rs77729186	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(53:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs77729186-G	NR	4E-10		0.1041	[0.072-0.137] unit decrease	Illumina [6720657] (imputed)	N
736	chr8	19826317	19826318	rs77729186	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	8p21.3	LPL	rs77729186-G	0.106417	2E-10		0.022894379	[0.016-0.03] unit increase	Affymetrix [93095623] (imputed)	N
736	chr8	19826372	19826373	rs2197089	21386085	Kraja AT	2011-03-08	Diabetes	A bivariate genome-wide approach to metabolic syndrome: STAMPEED consortium.	Metabolic syndrome (bivariate traits)	22,161 European ancestry individuals	NA	8p21.3	LPL	rs2197089-C	NR	2E-9	(TG-GLUC)	0.18	[0.12-0.24] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
736	chr8	19826700	19826701	rs79108221	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting triglycerides levels in chylomicrons and extremely large VLDL	4,734 individuals	NA	8p21.3		rs79108221-T	0.1126932	3E-10		0.226343	[0.16-0.3] mmol/l decrease	Illumina [7701709] (imputed)	N
736	chr8	19826700	19826701	rs79108221	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(53:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs79108221-C	NR	4E-10		0.0715	[0.049-0.094] unit decrease	Illumina [6720657] (imputed)	N
736	chr8	19826700	19826701	rs79108221	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x long total sleep time interaction (2df test)	at least 2,926 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, at least 7,664 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,906 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 31,986 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 317 East Asian ancestry long sleepers, up to 5,171 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 928 African American controls, 1,301 East Asian ancestry controls, up to 20,961 European ancestry controls, 10,064 Hispanic controls	8p21.3	LPL	rs79108221-?	NR	4E-96		0.06442	[0.058-0.071] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
736	chr8	19827847	19827848	rs10105606	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:0_[M+H]1+/Phosphatidylethanolamine_37:0_[M+H]1+/Phosphatidate_39:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs10105606-A	NR	9E-11		0.0801134	[0.056-0.104] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19827847	19827848	rs10105606	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_36:3_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs10105606-A	NR	9E-11		0.0728507	[0.051-0.095] unit decrease	Affymetrix [87696910] (imputed)	N
736	chr8	19827847	19827848	rs10105606	33500527	Park JM	2021-01-26	Sci Rep	Understanding the genetic architecture of the metabolically unhealthy normal weight and metabolically healthy obese phenotypes in a Korean population.	Metabolically unhealthy in obesity	9,083 Korean ancestry cases, 7,008 Korean ancestry controls	NA	8p21.3	LPL	rs10105606-A	0.12	2E-11		0.83	[0.78-0.87]	Affymetrix [7975321]	N
736	chr8	19827847	19827848	rs10105606	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	8p21.3	LPL	rs10105606-?	NR	4E-10	(L_VLDL_PL)	0.07113333	NR unit decrease	Illumina [609262]	N
736	chr8	19827847	19827848	rs10105606	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	8p21.3	LPL	rs10105606-?	NR	2E-8	(L_VLDL_PL)	0.07030597	NR unit decrease	Illumina [609262]	N
736	chr8	19827847	19827848	rs10105606	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	8p21.3	NR	rs10105606-?	NR	9E-27		0.04598314	[0.038-0.054] unit decrease	Illumina [31978265] (imputed)	N
736	chr8	19827847	19827848	rs10105606	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	8p21.3	NR	rs10105606-?	NR	1E-27		1.30084	[1.07-1.54] unit increase	Illumina [31978362] (imputed)	N
736	chr8	19827847	19827848	rs10105606	20864672	Waterworth DM	2010-09-23	Arterioscler Thromb Vasc Biol	Genetic variants influencing circulating lipid levels and risk of coronary artery disease.	Triglycerides	up to 17,723 European ancestry individuals	up to 37,774 European ancestry individuals, up to 9,665 Indian Asian ancestry individuals	8p21.3	LPL	rs10105606-C	0.68	4E-26		0.07	[0.06-0.08] increase	Affymetrix, Illumina, Perlegen [2155369] (imputed)	N
736	chr8	19828678	19828679	rs2410616	29615537	Kulminski AM	2018-03-01	Aging (Albany NY)	Strong impact of natural-selection-free heterogeneity in genetics of age-related phenotypes.	Triglyceride levels	up to 33,431 European ancestry individuals	NA	8p21.3	LPL	rs2410616-A	0.1734	4E-11		4.1097608	[2.89-5.33] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
736	chr8	19830169	19830170	rs1569209	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	8p21.3		rs1569209-T	0.914695	3E-29		0.0761092	[0.063-0.089] unit decrease	NR [11722792] (imputed)	N
736	chr8	19830169	19830170	rs1569209	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	8p21.3		rs1569209-T	0.914692	3E-41		0.0923099	[0.079-0.106] unit decrease	NR [11722792] (imputed)	N
736	chr8	19830169	19830170	rs1569209	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	8p21.3		rs1569209-G	0.085589	3E-11		0.026286276	[0.019-0.034] unit increase	Affymetrix [93095623] (imputed)	N
736	chr8	19830169	19830170	rs1569209	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	8p21.3	intergenic	rs1569209-T	0.9206	1E-300		0.2112	[0.2-0.22] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
736	chr8	19830768	19830769	rs1011685	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(53:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs1011685-A	NR	1E-40		0.0885	[0.076-0.101] unit decrease	Illumina [6720657] (imputed)	N
736	chr8	19830768	19830769	rs1011685	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs1011685-G	NR	1E-40		0.0949	[0.081-0.109] unit decrease	Illumina [6720657] (imputed)	N
736	chr8	19830768	19830769	rs1011685	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs1011685-G	NR	1E-40		0.0885	[0.076-0.101] unit decrease	Illumina [6720657] (imputed)	N
736	chr8	19830768	19830769	rs1011685	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs1011685-G	NR	1E-40		0.1065	[0.091-0.122] unit decrease	Illumina [6720657] (imputed)	N
736	chr8	19830768	19830769	rs1011685	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:1)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs1011685-T	NR	1E-40		0.1363	[0.12-0.16] unit decrease	Illumina [6720657] (imputed)	N
736	chr8	19830768	19830769	rs1011685	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs1011685-A	NR	1E-40		0.0713	[0.061-0.082] unit decrease	Illumina [6720657] (imputed)	N
736	chr8	19830768	19830769	rs1011685	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x short total sleep time interaction (2df test)	2,990 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,300 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, at least 11,842 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,350 European ancestry controls, 4,047 Hispanic/Latino controls	at least 220 African American short sleepers, 326 East Asian ancestry short sleepers, up to 5,288 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 1,292 East Asian ancestry controls, up to 20,844 European ancestry controls, 10,062 Hispanic controls	8p21.3	LPL	rs1011685-?	NR	2E-104		0.06821	[0.062-0.075] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
736	chr8	19830920	19830921	rs10096633	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	VLDL cholesterol levels	115,082 European ancestry individuals	NA	8p21.3		rs10096633-C	0.876093	6E-72		0.111905	[0.1-0.124] unit increase	NR [11722792] (imputed)	N
736	chr8	19830920	19830921	rs10096633	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very small VLDL	115,082 European ancestry individuals	NA	8p21.3		rs10096633-C	0.876093	2E-158		0.163071	[0.15-0.17] unit increase	NR [11722792] (imputed)	N
736	chr8	19830920	19830921	rs10096633	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large HDL	115,082 European ancestry individuals	NA	8p21.3		rs10096633-C	0.876093	3E-105		0.132739	[0.12-0.14] unit increase	NR [11722792] (imputed)	N
736	chr8	19830920	19830921	rs10096633	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium LDL	115,082 European ancestry individuals	NA	8p21.3		rs10096633-C	0.876093	1E-101		0.130516	[0.12-0.14] unit increase	NR [11722792] (imputed)	N
736	chr8	19830920	19830921	rs10096633	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in LDL	115,082 European ancestry individuals	NA	8p21.3		rs10096633-C	0.876093	1E-84		0.119177	[0.11-0.13] unit increase	NR [11722792] (imputed)	N
736	chr8	19830920	19830921	rs10096633	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in IDL	115,082 European ancestry individuals	NA	8p21.3		rs10096633-C	0.876093	5E-89		0.122021	[0.11-0.13] unit increase	NR [11722792] (imputed)	N
736	chr8	19830920	19830921	rs10096633	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very small VLDL	115,082 European ancestry individuals	NA	8p21.3		rs10096633-C	0.876093	3E-32		0.0724603	[0.06-0.084] unit increase	NR [11722792] (imputed)	N
736	chr8	19830920	19830921	rs10096633	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small VLDL	115,082 European ancestry individuals	NA	8p21.3		rs10096633-C	0.876093	1E-133		0.151685	[0.14-0.16] unit increase	NR [11722792] (imputed)	N
736	chr8	19830920	19830921	rs10096633	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Polyunsaturated fatty acid levels	115,006 European ancestry individuals	NA	8p21.3		rs10096633-C	0.876098	6E-9		0.0353479	[0.023-0.047] unit increase	NR [11722792] (imputed)	N
736	chr8	19830920	19830921	rs10096633	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	8p21.3		rs10096633-C	0.876093	9E-31		0.0720102	[0.06-0.084] unit decrease	NR [11722792] (imputed)	N
736	chr8	19830920	19830921	rs10096633	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in IDL	115,082 European ancestry individuals	NA	8p21.3		rs10096633-C	0.876093	3E-96		0.130744	[0.12-0.14] unit increase	NR [11722792] (imputed)	N
736	chr8	19830920	19830921	rs10096633	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very small VLDL	115,082 European ancestry individuals	NA	8p21.3		rs10096633-C	0.876093	1E-46		0.0880811	[0.076-0.1] unit increase	NR [11722792] (imputed)	N
736	chr8	19830920	19830921	rs10096633	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small VLDL	115,082 European ancestry individuals	NA	8p21.3		rs10096633-C	0.876093	3E-69		0.109599	[0.097-0.122] unit increase	NR [11722792] (imputed)	N
736	chr8	19830920	19830921	rs10096633	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium VLDL	115,082 European ancestry individuals	NA	8p21.3		rs10096633-C	0.876093	6E-61		0.102782	[0.091-0.115] unit increase	NR [11722792] (imputed)	N
736	chr8	19830920	19830921	rs10096633	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-3 fatty acid levels	115,006 European ancestry individuals	NA	8p21.3		rs10096633-C	0.876098	3E-12		0.0418412	[0.03-0.054] unit increase	NR [11722792] (imputed)	N
736	chr8	19830920	19830921	rs10096633	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	8p21.3		rs10096633-C	0.876093	2E-20		0.0567327	[0.045-0.069] unit increase	NR [11722792] (imputed)	N
736	chr8	19830920	19830921	rs10096633	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	8p21.3		rs10096633-C	0.876093	1E-30		0.071868	[0.06-0.084] unit increase	NR [11722792] (imputed)	N
736	chr8	19830920	19830921	rs10096633	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	8p21.3		rs10096633-C	0.876093	2E-39		0.0822462	[0.07-0.095] unit increase	NR [11722792] (imputed)	N
736	chr8	19830920	19830921	rs10096633	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very small VLDL particles	115,082 European ancestry individuals	NA	8p21.3		rs10096633-C	0.876093	1E-26		0.0656989	[0.054-0.078] unit increase	NR [11722792] (imputed)	N
736	chr8	19830920	19830921	rs10096633	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small LDL particles	115,082 European ancestry individuals	NA	8p21.3		rs10096633-C	0.876093	4E-25		0.0647643	[0.052-0.077] unit increase	NR [11722792] (imputed)	N
736	chr8	19830920	19830921	rs10096633	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium VLDL particles	115,082 European ancestry individuals	NA	8p21.3		rs10096633-C	0.876093	2E-67		0.108107	[0.096-0.12] unit increase	NR [11722792] (imputed)	N
736	chr8	19830920	19830921	rs10096633	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium LDL particles	115,082 European ancestry individuals	NA	8p21.3		rs10096633-C	0.876093	3E-16		0.0513629	[0.039-0.064] unit increase	NR [11722792] (imputed)	N
736	chr8	19830920	19830921	rs10096633	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of VLDL particles	115,082 European ancestry individuals	NA	8p21.3		rs10096633-C	0.876093	3E-101		0.132469	[0.12-0.14] unit increase	NR [11722792] (imputed)	N
736	chr8	19830920	19830921	rs10096633	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of LDL particles	115,082 European ancestry individuals	NA	8p21.3		rs10096633-C	0.876093	2E-11		0.0421142	[0.03-0.054] unit increase	NR [11722792] (imputed)	N
736	chr8	19830920	19830921	rs10096633	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	8p21.3		rs10096633-C	0.876091	2E-86		0.122621	[0.11-0.13] unit decrease	NR [11722792] (imputed)	N
736	chr8	19830920	19830921	rs10096633	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	8p21.3		rs10096633-C	0.876093	8E-20		0.0571348	[0.045-0.069] unit increase	NR [11722792] (imputed)	N
736	chr8	19830920	19830921	rs10096633	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small VLDL	115,082 European ancestry individuals	NA	8p21.3		rs10096633-C	0.876093	2E-69		0.109874	[0.098-0.122] unit increase	NR [11722792] (imputed)	N
736	chr8	19830920	19830921	rs10096633	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small LDL	115,082 European ancestry individuals	NA	8p21.3		rs10096633-C	0.876093	2E-15		0.0496573	[0.037-0.062] unit increase	NR [11722792] (imputed)	N
736	chr8	19830920	19830921	rs10096633	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium LDL	115,082 European ancestry individuals	NA	8p21.3		rs10096633-C	0.876093	1E-14		0.0485175	[0.036-0.061] unit increase	NR [11722792] (imputed)	N
736	chr8	19830920	19830921	rs10096633	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in VLDL	115,082 European ancestry individuals	NA	8p21.3		rs10096633-C	0.876093	2E-48		0.0913863	[0.079-0.104] unit increase	NR [11722792] (imputed)	N
736	chr8	19830920	19830921	rs10096633	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	8p21.3		rs10096633-C	0.876093	2E-54		0.0969777	[0.085-0.109] unit increase	NR [11722792] (imputed)	N
736	chr8	19830920	19830921	rs10096633	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein B levels	115,082 European ancestry individuals	NA	8p21.3		rs10096633-C	0.876093	8E-11		0.0406003	[0.028-0.053] unit increase	NR [11722792] (imputed)	N
736	chr8	19830920	19830921	rs10096633	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_52:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs10096633-T	NR	1E-10		0.142229	[0.099-0.186] unit decrease	Affymetrix [87696910] (imputed)	N
736	chr8	19830920	19830921	rs10096633	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_46:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs10096633-T	NR	2E-12		0.145525	[0.11-0.19] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19830920	19830921	rs10096633	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_45:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs10096633-T	NR	9E-11		0.113121	[0.079-0.147] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19830920	19830921	rs10096633	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_40:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs10096633-T	NR	3E-12		0.144477	[0.1-0.19] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19830920	19830921	rs10096633	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_38:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs10096633-T	NR	6E-11		0.106591	[0.075-0.139] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19830920	19830921	rs10096633	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_38:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs10096633-T	NR	6E-16		0.141252	[0.11-0.18] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19830920	19830921	rs10096633	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_36:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs10096633-T	NR	7E-14		0.127699	[0.094-0.161] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19830920	19830921	rs10096633	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_36:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs10096633-T	NR	3E-15		0.138859	[0.1-0.17] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19830920	19830921	rs10096633	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_36:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs10096633-T	NR	1E-15		0.137426	[0.1-0.17] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19830920	19830921	rs10096633	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_34:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs10096633-T	NR	8E-14		0.122893	[0.091-0.155] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19830920	19830921	rs10096633	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_34:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs10096633-T	NR	3E-14		0.136099	[0.1-0.17] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19830920	19830921	rs10096633	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_34:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs10096633-T	NR	2E-14		0.13303	[0.099-0.167] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19830920	19830921	rs10096633	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_34:3_[M+H]1+/Phosphatidylcholine-P_34:2_[M+H]1+/Phosphatidylethanolamine-P_37:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs10096633-T	NR	1E-11		0.121547	[0.086-0.157] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19830920	19830921	rs10096633	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_34:1_[M+H]1+/Phosphatidylcholine-P_34:0_[M+H]1+/Phosphatidylethanolamine-O_37:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs10096633-T	NR	7E-12		0.11688	[0.083-0.15] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19830920	19830921	rs10096633	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_32:1_[M+H]1+/Phosphatidylcholine-P_32:0_[M+H]1+/Phosphatidylethanolamine-O_35:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs10096633-T	NR	1E-13		0.131605	[0.097-0.166] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19830920	19830921	rs10096633	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_31:0_[M+H]1+/Phosphatidylethanolamine-O_34:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs10096633-T	NR	1E-10		0.111225	[0.077-0.145] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19830920	19830921	rs10096633	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_44:7_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs10096633-T	NR	1E-14		0.133384	[0.1-0.167] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19830920	19830921	rs10096633	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_36:3_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs10096633-T	NR	1E-12		0.113521	[0.082-0.145] unit decrease	Affymetrix [87696910] (imputed)	N
736	chr8	19830920	19830921	rs10096633	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_36:2_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs10096633-T	NR	1E-12		0.111877	[0.081-0.143] unit decrease	Affymetrix [87696910] (imputed)	N
736	chr8	19830920	19830921	rs10096633	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_34:3_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs10096633-T	NR	4E-11		0.105617	[0.074-0.137] unit decrease	Affymetrix [87696910] (imputed)	N
736	chr8	19830920	19830921	rs10096633	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_34:2_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs10096633-T	NR	9E-14		0.116489	[0.086-0.147] unit decrease	Affymetrix [87696910] (imputed)	N
736	chr8	19830920	19830921	rs10096633	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_34:1_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs10096633-T	NR	1E-12		0.113204	[0.082-0.144] unit decrease	Affymetrix [87696910] (imputed)	N
736	chr8	19830920	19830921	rs10096633	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_32:2_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs10096633-T	NR	4E-10		0.106725	[0.073-0.14] unit decrease	Affymetrix [87696910] (imputed)	N
736	chr8	19830920	19830921	rs10096633	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_18:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs10096633-T	NR	4E-10		0.0800069	[0.055-0.105] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19830920	19830921	rs10096633	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_18:0_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs10096633-T	NR	7E-11		0.0827434	[0.058-0.108] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19830920	19830921	rs10096633	33109212	Chang H	2020-10-28	BMC Med	Genetic architecture of cardiometabolic risks in people living with HIV.	Triglyceride levels in HIV infection	3,095 European ancestry individuals, 3,189 African American individuals	NA	8p21.3	LPL, SLC18A1	rs10096633-?		2E-8	(African American)	0.13571067	[0.088-0.183] unit decrease	Illumina [13620258] (imputed)	N
736	chr8	19830920	19830921	rs10096633	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8p21.3	NR	rs10096633-T	0.130604	4E-25				Affymetrix, Illumina [21126107] (imputed)	N
736	chr8	19830920	19830921	rs10096633	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	8p21.3	NR	rs10096633-C	0.8211	8E-10		0.033	[0.022-0.044] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
736	chr8	19830920	19830921	rs10096633	32226016	Hu Y	2020-03-30	PLoS Genet	Minority-centric meta-analyses of blood lipid levels identify novel loci in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Total triglycerides levels	17,563 African American individuals, 23,077 Hispanics ancestry individuals, 2,381 East Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals, 22,898 European ancestry individuals	up to 71,987 African American individuals, up to 34,899 Hispanics ancestry individuals, up to 315,133 European ancestry individuals, up to 9,593 Asian ancestry individuals, up to 94,674 European ancestry, East Asian ancestry, African American, South Asian ancestry, Hispanic individuals	8p21.3		rs10096633-?	NR	9E-47		0.14	[0.12-0.16] mg/dL decrease	Affymetrix, Illumina [NR] (imputed)	N
736	chr8	19830920	19830921	rs10096633	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	8p21.3	NR	rs10096633-?	NR	9E-47		0.07093065	[0.061-0.081] unit decrease	Illumina [31978265] (imputed)	N
736	chr8	19830920	19830921	rs10096633	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	8p21.3	NR	rs10096633-?	NR	5E-35		1.761285	[1.48-2.04] unit increase	Illumina [31978362] (imputed)	N
736	chr8	19830920	19830921	rs10096633	30911093	Bandesh K	2019-03-25	J Hum Genet	Genome-wide association study of blood lipids in Indians confirms universality of established variants.	Triglyceride levels	1,036 Indian ancestry individuals	4,235 Indian ancestry individuals, 188,577 European ancestry individuals, 7,898 East Asian, South Asian and African ancestry individuals	8p21.3	LPL	rs10096633-A	0.1	2E-9	(Indian)	13.66	[9.21-18.11] unit decrease	Illumina [551825]	N
736	chr8	19830920	19830921	rs10096633	30911093	Bandesh K	2019-03-25	J Hum Genet	Genome-wide association study of blood lipids in Indians confirms universality of established variants.	High density lipoprotein cholesterol levels	1,036 Indian ancestry individuals	4,235 Indian ancestry individuals, 188,577 European ancestry individuals, 7,898 East Asian, South Asian and African ancestry individuals	8p21.3	LPL	rs10096633-A	0.1	4E-12	(Indian)	2.57	[1.84-3.3] unit increase	Illumina [551825]	N
736	chr8	19830920	19830921	rs10096633	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	8p21.3	LPL	rs10096633-C	0.8766	1E-12		1.07	[1.05-1.09]	Affymetrix, Illumina [~ 27000000] (imputed)	N
736	chr8	19830920	19830921	rs10096633	21347282	Lettre G	2011-02-10	PLoS Genet	Genome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project.	HDL cholesterol	7,813 African American individuals	4,323 African American and Afro-Caribbean individuals	8p21.3	LPL	rs10096633-T	0.43	2E-9		0.101	[0.068-0.134] unit increase	Affymetrix [~ 2740000] (imputed)	N
736	chr8	19830920	19830921	rs10096633	20139978	Kamatani Y	2010-02-07	Nat Genet	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Triglycerides	8,993 Japanese ancestry individuals	NA	8p21.3	LPL	rs10096633-T	0.12	9E-14		0.169	[0.12-0.21] unit decrease	Illumina [561583]	N
736	chr8	19830920	19830921	rs10096633	19060911	Aulchenko YS	2008-12-07	Nat Genet	Loci influencing lipid levels and coronary heart disease risk in 16 European population cohorts.	Triglycerides	17,100 European ancestry individuals, 715 Orcadian individuals	NA	8p21.3	LPL	rs10096633-G	0.88	2E-18		0.17	[NR] s.d. increase	Affymetrix, Illumina [up to 600000]	N
736	chr8	19830920	19830921	rs10096633	19060910	Sabatti C	2008-12-07	Nat Genet	Genome-wide association analysis of metabolic traits in a birth cohort from a founder population.	Metabolic traits	4,763 Northern Finnish founder individuals	NA	8p21.3	LPL	rs10096633-A	0.098	5E-8	(TG)	0.12	[0.07-0.17] mmol/l decrease	Illumina [329091]	N
736	chr8	19832645	19832646	rs17482753	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(53:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs17482753-G	NR	6E-14		0.1096	[0.081-0.138] unit increase	Illumina [6720657] (imputed)	N
736	chr8	19832645	19832646	rs17482753	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_38:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs17482753-T	NR	3E-13		0.140548	[0.1-0.18] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19832645	19832646	rs17482753	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_36:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs17482753-T	NR	3E-13		0.137242	[0.1-0.17] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19832645	19832646	rs17482753	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_36:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs17482753-T	NR	2E-14		0.148364	[0.11-0.19] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19832645	19832646	rs17482753	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_36:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs17482753-T	NR	1E-14		0.146052	[0.11-0.18] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19832645	19832646	rs17482753	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_34:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs17482753-T	NR	1E-11		0.122624	[0.087-0.158] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19832645	19832646	rs17482753	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_34:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs17482753-T	NR	1E-12		0.13968	[0.1-0.18] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19832645	19832646	rs17482753	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_34:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs17482753-T	NR	2E-12		0.134516	[0.097-0.172] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19832645	19832646	rs17482753	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs17482753-C	NR	6E-14		0.1953	[0.14-0.25] unit decrease	Illumina [6720657] (imputed)	N
736	chr8	19832645	19832646	rs17482753	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:1_[M+H]1+/Phosphatidylethanolamine_37:1_[M+H]1+/Phosphatidate_39:2_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs17482753-T	NR	4E-10		0.120755	[0.083-0.159] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19832645	19832646	rs17482753	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_32:1_[M+H]1+/Phosphatidylcholine-P_32:0_[M+H]1+/Phosphatidylethanolamine-O_35:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs17482753-T	NR	2E-11		0.131156	[0.093-0.169] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19832645	19832646	rs17482753	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_44:7_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs17482753-T	NR	1E-12		0.135146	[0.098-0.172] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19832645	19832646	rs17482753	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_36:3_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs17482753-T	NR	2E-12		0.123611	[0.089-0.158] unit decrease	Affymetrix [87696910] (imputed)	N
736	chr8	19832645	19832646	rs17482753	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_36:2_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs17482753-T	NR	1E-11		0.116863	[0.083-0.151] unit decrease	Affymetrix [87696910] (imputed)	N
736	chr8	19832645	19832646	rs17482753	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_34:2_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs17482753-T	NR	8E-12		0.117902	[0.084-0.152] unit decrease	Affymetrix [87696910] (imputed)	N
736	chr8	19832645	19832646	rs17482753	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_34:1_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs17482753-T	NR	1E-10		0.112757	[0.078-0.147] unit decrease	Affymetrix [87696910] (imputed)	N
736	chr8	19832645	19832646	rs17482753	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs17482753-G	NR	6E-14		0.1101	[0.081-0.139] unit increase	Illumina [6720657] (imputed)	N
736	chr8	19832645	19832646	rs17482753	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:1)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs17482753-T	NR	6E-14		0.0682	[0.05-0.086] unit increase	Illumina [6720657] (imputed)	N
736	chr8	19832645	19832646	rs17482753	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_18:0_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs17482753-T	NR	4E-10		0.087635	[0.06-0.115] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19832645	19832646	rs17482753	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs17482753-A	NR	6E-14		0.1309	[0.097-0.165] unit increase	Illumina [6720657] (imputed)	N
736	chr8	19832645	19832646	rs17482753	31910446	Oh SW	2020-01-07	PLoS One	Genome-wide association study of metabolic syndrome in Korean populations.	Hypertriglyceridemia	7,423 Korean ancestry cases and controls	NA	8p21.3	NR	rs17482753-?	NR	5E-6		1.3888888	[1.21-1.6]	Affymetrix [at least 584061] (imputed)	N
736	chr8	19832645	19832646	rs17482753	31902109	Li D	2020-01-04	Genes Genomics	Progressive effects of single-nucleotide polymorphisms on 16 phenotypic traits based on longitudinal data.	Cholesterol	6,840 Korean ancestry individuals	NA	8p21.3	LPL, SLC18A1	rs17482753-T	0.1241	3E-18	(HDL)	0.04232	NR unit increase	Affymetrix [305158]	N
736	chr8	19832645	19832646	rs17482753	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	8p21.3	LPL	rs17482753-?	NR	6E-13	(S_VLDL_FC)	0.079098545	NR unit decrease	Illumina [609262]	N
736	chr8	19832645	19832646	rs17482753	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	8p21.3	LPL	rs17482753-?	NR	4E-13	(HDL_TG)	0.07057804	NR unit decrease	Illumina [609262]	N
736	chr8	19832645	19832646	rs17482753	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	8p21.3	LPL	rs17482753-?	NR	4E-11	(VLDL_C)	0.05110723	NR unit decrease	Illumina [609262]	N
736	chr8	19832645	19832646	rs17482753	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	8p21.3	LPL	rs17482753-?	NR	3E-11	(SFA)	0.039978042	NR unit decrease	Illumina [609262]	N
736	chr8	19832645	19832646	rs17482753	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	8p21.3	LPL	rs17482753-?	NR	1E-13	(M_VLDL_TG)	0.08210751	NR unit decrease	Illumina [609262]	N
736	chr8	19832645	19832646	rs17482753	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	8p21.3	LPL	rs17482753-?	NR	2E-10	(HDL_TG)	0.08033374	NR unit decrease	Illumina [609262]	N
736	chr8	19832645	19832646	rs17482753	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	8p21.3	LPL	rs17482753-?	NR	1E-8	(VLDL_C)	0.08360728	NR unit decrease	Illumina [609262]	N
736	chr8	19832645	19832646	rs17482753	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	8p21.3	LPL	rs17482753-?	NR	1E-10	(S_VLDL_FC)	0.094922364	NR unit decrease	Illumina [609262]	N
736	chr8	19832645	19832646	rs17482753	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	8p21.3	LPL	rs17482753-?	NR	1E-10	(M_VLDL_TG)	0.08053531	NR unit decrease	Illumina [609262]	N
736	chr8	19832645	19832646	rs17482753	31566214	Kulminski AM	2019-09-30	J Gerontol A Biol Sci Med Sci	Quantitative and qualitative role of antagonistic heterogeneity in genetics of blood lipids.	Triglyceride levels	29,902 European ancestry individuals	NA	8p21.3		rs17482753-T	0.1	8E-41		12.82	[10.94-14.70] unit decrease	Affymetrix, Illumina [up to 2500000] (imputed)	N
736	chr8	19832645	19832646	rs17482753	31566214	Kulminski AM	2019-09-30	J Gerontol A Biol Sci Med Sci	Quantitative and qualitative role of antagonistic heterogeneity in genetics of blood lipids.	High density lipoprotein cholesterol levels	29,902 European ancestry individuals	NA	8p21.3		rs17482753-T	0.1	5E-38		2.59	[2.20-2.98] unit increase	Affymetrix, Illumina [up to 2500000] (imputed)	N
736	chr8	19832645	19832646	rs17482753	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	8p21.3	NR	rs17482753-?	NR	2E-32		0.08842833	[0.074-0.103] unit decrease	Illumina [31978265] (imputed)	N
736	chr8	19832645	19832646	rs17482753	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	8p21.3	NR	rs17482753-?	NR	2E-22		2.02847	[1.62-2.44] unit increase	Illumina [31978362] (imputed)	N
736	chr8	19832645	19832646	rs17482753	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (antithrombotic agents)	67,653 European ancestry cases, 85,986 European ancestry controls	NA	8p21.3	LPL	rs17482753-T	0.10142	2E-10		0.070946574	[0.049-0.093] unit decrease	Affymetrix [7288503] (imputed)	N
736	chr8	19832645	19832646	rs17482753	29615537	Kulminski AM	2018-03-01	Aging (Albany NY)	Strong impact of natural-selection-free heterogeneity in genetics of age-related phenotypes.	Triglyceride levels	up to 33,431 European ancestry individuals	NA	8p21.3	LPL	rs17482753-T	0.1065	6E-39		10.830257	[9.2-12.46] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
736	chr8	19832645	19832646	rs17482753	29615537	Kulminski AM	2018-03-01	Aging (Albany NY)	Strong impact of natural-selection-free heterogeneity in genetics of age-related phenotypes.	High density lipoprotein cholesterol levels	up to 33,431 European ancestry individuals	NA	8p21.3	LPL	rs17482753-T	0.1065	2E-41		4.9720945	[4.25-5.7] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
736	chr8	19832645	19832646	rs17482753	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p21.3	NR	rs17482753-G	NR	3E-199		0.186	unit increase	Affymetrix [at least 7091467] (imputed)	N
736	chr8	19832645	19832646	rs17482753	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p21.3	NR	rs17482753-G	0.934	9E-7	(AA)	0.225	unit increase	Affymetrix [at least 7091467] (imputed)	N
736	chr8	19832645	19832646	rs17482753	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p21.3	NR	rs17482753-G	0.915	3E-17	(Hispanic)	0.204	unit increase	Affymetrix [at least 7091467] (imputed)	N
736	chr8	19832645	19832646	rs17482753	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p21.3	NR	rs17482753-G	0.897	9E-164	(EA)	0.184	unit increase	Affymetrix [at least 7091467] (imputed)	N
736	chr8	19832645	19832646	rs17482753	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p21.3	NR	rs17482753-G	0.891	3E-16	(East Asian)	0.189	unit increase	Affymetrix [at least 7091467] (imputed)	N
736	chr8	19832645	19832646	rs17482753	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p21.3	NR	rs17482753-G	NR	2E-130		0.137	unit decrease	Affymetrix [at least 7091467] (imputed)	N
736	chr8	19832645	19832646	rs17482753	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p21.3	NR	rs17482753-G	0.915	2E-14	(Hispanic)	0.168	unit decrease	Affymetrix [at least 7091467] (imputed)	N
736	chr8	19832645	19832646	rs17482753	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p21.3	NR	rs17482753-G	0.897	9E-104	(EA)	0.133	unit decrease	Affymetrix [at least 7091467] (imputed)	N
736	chr8	19832645	19832646	rs17482753	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p21.3	NR	rs17482753-G	0.891	9E-14	(East Asian)	0.159	unit decrease	Affymetrix [at least 7091467] (imputed)	N
736	chr8	19832645	19832646	rs17482753	24023261	Keller M	2013-09-10	J Lipid Res	THOC5: a novel gene involved in HDL-cholesterol metabolism.	Lipid traits	839 European ancestry individuals	up to 5,248 European ancestry individuals	8p21.3	LPL	rs17482753-T	0.09	6E-10	(Triglycerides)	0.24	unit decrease	Affymetrix [390619]	N
736	chr8	19832645	19832646	rs17482753	20031538	Heid IM	2008-10-01	Circ Cardiovasc Genet	Genome-wide association analysis of high-density lipoprotein cholesterol in the population-based KORA study sheds new light on intergenic regions.	HDL cholesterol	Up to 4,274 European ancestry individuals	Up to 15,873 European ancestry individuals	8p21.3	LPL	rs17482753-T	0.11	3E-11		2.02	[NR] mg/dl increase	Affymetrix [up to 2557253] (imputed)	N
736	chr8	19832645	19832646	rs17482753	17463246	Saxena R	2007-04-26	Science	Genome-wide association analysis identifies loci for type 2 diabetes and triglyceride levels.	Triglycerides	2,659 European ancestry type 2 diabetes cases and controls	5,217 European ancestry individuals	8p21.3	LPL	rs17482753-T	0.1	5E-7		1.0	(% variance) increase	Affymetrix [389878]	N
736	chr8	19832699	19832700	rs182091484	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	8p21.3		rs182091484-G	0.995842	3E-8		0.171746	[0.11-0.23] unit decrease	NR [11722792] (imputed)	N
736	chr8	19833155	19833156	rs80073370	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	8p21.3	LPL, SLC18A1	rs80073370-A		8E-9		0.404	unit increase	Affymetrix [at least 2696785] (imputed)	N
736	chr8	19833155	19833156	rs80073370	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	8p21.3	LPL, SLC18A1	rs80073370-A		3E-6		0.219	unit increase	Affymetrix [at least 2696785] (imputed)	N
736	chr8	19835049	19835050	rs2165557	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x short total sleep time interaction (2df test)	2,990 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,300 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, at least 11,842 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,350 European ancestry controls, 4,047 Hispanic/Latino controls	at least 220 African American short sleepers, 326 East Asian ancestry short sleepers, up to 5,288 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 1,292 East Asian ancestry controls, up to 20,844 European ancestry controls, 10,062 Hispanic controls	8p21.3	LPL	rs2165557-?	NR	2E-19		0.02116	[0.016-0.026] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
736	chr8	19835049	19835050	rs2165557	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x long total sleep time interaction (2df test)	at least 2,926 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, at least 7,664 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,906 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 31,986 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 317 East Asian ancestry long sleepers, up to 5,171 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 928 African American controls, 1,301 East Asian ancestry controls, up to 20,961 European ancestry controls, 10,064 Hispanic controls	8p21.3	LPL	rs2165557-?	NR	2E-18		0.02181	[0.017-0.027] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
736	chr8	19836645	19836646	rs78963197	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs78963197-A	NR	4E-10		0.0417	[0.029-0.055] unit increase	Illumina [6720657] (imputed)	N
736	chr8	19836645	19836646	rs78963197	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs78963197-T	NR	4E-10		0.0637	[0.044-0.084] unit increase	Illumina [6720657] (imputed)	N
736	chr8	19836645	19836646	rs78963197	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs78963197-C	NR	4E-10		0.0634	[0.044-0.083] unit increase	Illumina [6720657] (imputed)	N
736	chr8	19836645	19836646	rs78963197	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:1)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs78963197-G	NR	4E-10		0.0774	[0.053-0.102] unit decrease	Illumina [6720657] (imputed)	N
736	chr8	19836645	19836646	rs78963197	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs78963197-T	NR	4E-10		0.0469	[0.032-0.062] unit increase	Illumina [6720657] (imputed)	N
736	chr8	19836645	19836646	rs78963197	30718733	Moon S	2019-02-04	Sci Rep	The Korea Biobank Array: Design and Identification of Coding Variants Associated with Blood Biochemical Traits.	Triglyceride levels	6,949 Korean ancestry individuals	6,000 Korean ancestry individuals	8p21.3	LPL	rs78963197-C	0.124	8E-13		0.0905	[0.066-0.115] unit decrease	Affymetrix [at least 805769] (imputed)	N
736	chr8	19836983	19836984	rs74855321	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs74855321-A	NR	3E-10		0.1024	[0.07-0.134] unit decrease	Illumina [6720657] (imputed)	N
736	chr8	19836983	19836984	rs74855321	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs74855321-T	NR	3E-10		0.0874	[0.06-0.115] unit decrease	Illumina [6720657] (imputed)	N
736	chr8	19836983	19836984	rs74855321	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs74855321-G	NR	3E-10		0.0511	[0.035-0.067] unit increase	Illumina [6720657] (imputed)	N
736	chr8	19836983	19836984	rs74855321	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:1)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs74855321-A	NR	3E-10		0.0695	[0.048-0.091] unit decrease	Illumina [6720657] (imputed)	N
736	chr8	19836983	19836984	rs74855321	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs74855321-T	NR	3E-10		0.0703	[0.048-0.092] unit increase	Illumina [6720657] (imputed)	N
736	chr8	19840340	19840341	rs58946909	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs58946909-C	NR	4E-11		0.0588	[0.041-0.076] unit decrease	Illumina [6720657] (imputed)	N
736	chr8	19840340	19840341	rs58946909	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs58946909-G	NR	4E-11		0.0405	[0.028-0.053] unit decrease	Illumina [6720657] (imputed)	N
736	chr8	19840340	19840341	rs58946909	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:1)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs58946909-T	NR	4E-11		0.061	[0.043-0.079] unit decrease	Illumina [6720657] (imputed)	N
736	chr8	19840340	19840341	rs58946909	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs58946909-T	NR	4E-11		0.0575	[0.04-0.075] unit decrease	Illumina [6720657] (imputed)	N
736	chr8	19840407	19840408	rs75551077	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs75551077-A	NR	3E-10		0.1041	[0.072-0.137] unit decrease	Illumina [6720657] (imputed)	N
736	chr8	19840407	19840408	rs75551077	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs75551077-A	NR	3E-10		0.1041	[0.072-0.137] unit decrease	Illumina [6720657] (imputed)	N
736	chr8	19840407	19840408	rs75551077	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs75551077-T	NR	3E-10		0.1041	[0.072-0.137] unit decrease	Illumina [6720657] (imputed)	N
736	chr8	19840407	19840408	rs75551077	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:1)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs75551077-T	NR	3E-10		0.1041	[0.072-0.137] unit decrease	Illumina [6720657] (imputed)	N
736	chr8	19840407	19840408	rs75551077	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:0)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs75551077-G	NR	3E-10		0.1041	[0.072-0.137] unit decrease	Illumina [6720657] (imputed)	N
736	chr8	19840407	19840408	rs75551077	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs75551077-A	NR	3E-10		0.1041	[0.072-0.137] unit decrease	Illumina [6720657] (imputed)	N
736	chr8	19840407	19840408	rs75551077	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	8p21.3	NR	rs75551077-?	NR	1E-38		0.08300588	[0.07-0.096] unit decrease	Illumina [31978265] (imputed)	N
736	chr8	19840407	19840408	rs75551077	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	8p21.3	NR	rs75551077-?	NR	2E-27		1.998214	[1.64-2.36] unit increase	Illumina [31978362] (imputed)	N
736	chr8	19840407	19840408	rs75551077	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p21.3	NR	rs75551077-G	NR	2E-191		0.181	unit increase	Affymetrix [at least 7091467] (imputed)	N
736	chr8	19840407	19840408	rs75551077	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p21.3	NR	rs75551077-G	0.909	1E-16	(Hispanic)	0.196	unit increase	Affymetrix [at least 7091467] (imputed)	N
736	chr8	19840407	19840408	rs75551077	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p21.3	NR	rs75551077-G	0.896	9E-158	(EA)	0.182	unit increase	Affymetrix [at least 7091467] (imputed)	N
736	chr8	19840407	19840408	rs75551077	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p21.3	NR	rs75551077-G	0.89	3E-17	(East Asian)	0.194	unit increase	Affymetrix [at least 7091467] (imputed)	N
736	chr8	19840407	19840408	rs75551077	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p21.3	NR	rs75551077-G	NR	9E-123		0.132	unit decrease	Affymetrix [at least 7091467] (imputed)	N
736	chr8	19840407	19840408	rs75551077	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p21.3	NR	rs75551077-G	0.909	1E-14	(Hispanic)	0.165	unit decrease	Affymetrix [at least 7091467] (imputed)	N
736	chr8	19840407	19840408	rs75551077	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p21.3	NR	rs75551077-G	0.896	2E-97	(EA)	0.13	unit decrease	Affymetrix [at least 7091467] (imputed)	N
736	chr8	19840407	19840408	rs75551077	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p21.3	NR	rs75551077-G	0.89	2E-13	(East Asian)	0.156	unit decrease	Affymetrix [at least 7091467] (imputed)	N
736	chr8	19842767	19842768	rs113988682	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs113988682-C	NR	7E-30		0.0772	[0.064-0.091] unit increase	Illumina [6720657] (imputed)	N
736	chr8	19842767	19842768	rs113988682	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs113988682-G	NR	7E-30		0.1361	[0.11-0.16] unit increase	Illumina [6720657] (imputed)	N
736	chr8	19842767	19842768	rs113988682	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs113988682-C	NR	7E-30		0.1349	[0.11-0.16] unit increase	Illumina [6720657] (imputed)	N
736	chr8	19842767	19842768	rs113988682	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:1)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs113988682-G	NR	7E-30		0.1495	[0.12-0.18] unit decrease	Illumina [6720657] (imputed)	N
736	chr8	19842767	19842768	rs113988682	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs113988682-C	NR	7E-30		0.1349	[0.11-0.16] unit increase	Illumina [6720657] (imputed)	N
736	chr8	19843170	19843171	rs17091891	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	8p21.3	NR	rs17091891-C	0.1226	3E-9		0.0421	[0.028-0.056] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
736	chr8	19843170	19843171	rs17091891	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	8p21.3	intergenic	rs17091891-T	0.8709	5E-14		0.0585	[0.043-0.074] unit increase	Affymetrix [at least 7947838] (imputed)	N
736	chr8	19843461	19843462	rs17410914	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(53:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs17410914-A	NR	6E-22		0.0978	[0.078-0.118] unit decrease	Illumina [6720657] (imputed)	N
736	chr8	19843461	19843462	rs17410914	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs17410914-C	NR	6E-22		0.0592	[0.047-0.071] unit increase	Illumina [6720657] (imputed)	N
736	chr8	19843461	19843462	rs17410914	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs17410914-T	NR	6E-22		0.0588	[0.047-0.071] unit increase	Illumina [6720657] (imputed)	N
736	chr8	19843461	19843462	rs17410914	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs17410914-T	NR	6E-22		0.1681	[0.13-0.2] unit decrease	Illumina [6720657] (imputed)	N
736	chr8	19843461	19843462	rs17410914	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:1)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs17410914-C	NR	6E-22		0.0588	[0.047-0.071] unit increase	Illumina [6720657] (imputed)	N
736	chr8	19843578	19843579	rs75802599	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antithrombotic agents)	67,653 European ancestry cases, 85,986 European ancestry controls, 54,220 East Asian ancestry cases, 124,506 East Asian ancestry controls	NA	8p21.3		rs75802599-C	NR	2E-10		0.075	[0.052-0.098] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
736	chr8	19843578	19843579	rs75802599	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(53:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs75802599-G	NR	3E-10		0.0394	[0.027-0.052] unit increase	Illumina [6720657] (imputed)	N
736	chr8	19843578	19843579	rs75802599	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs75802599-C	NR	3E-10		0.1461	[0.1-0.19] unit increase	Illumina [6720657] (imputed)	N
736	chr8	19843578	19843579	rs75802599	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs75802599-T	NR	3E-10		0.0731	[0.05-0.096] unit decrease	Illumina [6720657] (imputed)	N
736	chr8	19843578	19843579	rs75802599	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:1)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs75802599-G	NR	3E-10		0.0703	[0.048-0.092] unit decrease	Illumina [6720657] (imputed)	N
736	chr8	19843747	19843748	rs147011441	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	8p21.3	LPL	rs147011441-G	0.975002	1E-10		0.0424968	[0.03-0.055] unit decrease	Affymetrix [NR] (imputed)	N
736	chr8	19843860	19843861	rs117227752	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(53:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs117227752-A	NR	6E-28		0.1258	[0.1-0.15] unit increase	Illumina [6720657] (imputed)	N
736	chr8	19843860	19843861	rs117227752	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs117227752-C	NR	6E-28		0.1553	[0.13-0.18] unit decrease	Illumina [6720657] (imputed)	N
736	chr8	19843860	19843861	rs117227752	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs117227752-A	NR	6E-28		0.1164	[0.096-0.137] unit decrease	Illumina [6720657] (imputed)	N
736	chr8	19843860	19843861	rs117227752	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:1)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs117227752-C	NR	6E-28		0.1119	[0.092-0.132] unit decrease	Illumina [6720657] (imputed)	N
736	chr8	19843929	19843930	rs184371102	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x short total sleep time interaction (2df test)	3,007 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,474 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, up to 11,901 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,567 European ancestry controls, 4,047 Hispanic/Latino controls	up to 221 African American short sleepers, 629 East Asian ancestry short sleepers, up to 9,585 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 2,504 East Asian ancestry controls, up to 38,027 European ancestry controls, 10,061 Hispanic controls	8p21.3	LPL	rs184371102-?	NR	3E-12		0.02923	[0.021-0.037] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
736	chr8	19843929	19843930	rs184371102	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x long total sleep time interaction (2df test)	2,933 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, up to 7,870 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,975 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 32,171 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 616 East Asian ancestry long sleepers, up to 9,486 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 929 African American controls, 2,517 East Asian ancestry controls, up to 38,126 European ancestry controls, 10,063 Hispanic controls	8p21.3	LPL	rs184371102-?	NR	2E-18		0.03197	[0.024-0.04] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
736	chr8	19844221	19844222	rs12678919	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_46:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs12678919-G	NR	2E-10		0.146242	[0.1-0.19] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19844221	19844222	rs12678919	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_40:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs12678919-G	NR	4E-10		0.143956	[0.099-0.189] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19844221	19844222	rs12678919	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_38:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs12678919-G	NR	9E-14		0.144945	[0.11-0.18] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19844221	19844222	rs12678919	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_36:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs12678919-G	NR	4E-13		0.137441	[0.1-0.17] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19844221	19844222	rs12678919	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_36:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs12678919-G	NR	8E-15		0.152466	[0.11-0.19] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19844221	19844222	rs12678919	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_36:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs12678919-G	NR	6E-15		0.148948	[0.11-0.19] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19844221	19844222	rs12678919	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_34:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs12678919-G	NR	8E-11		0.119217	[0.083-0.155] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19844221	19844222	rs12678919	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_34:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs12678919-G	NR	7E-13		0.142921	[0.1-0.18] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19844221	19844222	rs12678919	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_34:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs12678919-G	NR	1E-12		0.137607	[0.1-0.175] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19844221	19844222	rs12678919	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_32:1_[M+H]1+/Phosphatidylcholine-P_32:0_[M+H]1+/Phosphatidylethanolamine-O_35:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs12678919-G	NR	5E-12		0.136105	[0.097-0.175] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19844221	19844222	rs12678919	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_44:7_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs12678919-G	NR	7E-13		0.138213	[0.1-0.18] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19844221	19844222	rs12678919	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_36:3_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs12678919-G	NR	5E-12		0.122094	[0.087-0.157] unit decrease	Affymetrix [87696910] (imputed)	N
736	chr8	19844221	19844222	rs12678919	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_36:2_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs12678919-G	NR	1E-11		0.118512	[0.084-0.153] unit decrease	Affymetrix [87696910] (imputed)	N
736	chr8	19844221	19844222	rs12678919	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_34:2_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs12678919-G	NR	6E-12		0.119645	[0.086-0.154] unit decrease	Affymetrix [87696910] (imputed)	N
736	chr8	19844221	19844222	rs12678919	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_34:1_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs12678919-G	NR	5E-11		0.116411	[0.082-0.151] unit decrease	Affymetrix [87696910] (imputed)	N
736	chr8	19844221	19844222	rs12678919	31694877	Nishida Y	2019-11-06	J Lipid Res	The interaction between ABCA1 polymorphism and physical activity on the HDL-cholesterol levels in a Japanese population.	HDL cholesterol levels	2,431 Japanese ancestry women	3,109 Japanese ancestry women	8p21.3	LPL	rs12678919-A	0.8753	2E-14		0.0485	[0.036-0.061] unit decrease	Illumina [7094228] (imputed)	N
736	chr8	19844221	19844222	rs12678919	31694877	Nishida Y	2019-11-06	J Lipid Res	The interaction between ABCA1 polymorphism and physical activity on the HDL-cholesterol levels in a Japanese population.	HDL cholesterol levels	2,231 Japanese ancestry men	2,599 Japanese ancestry men	8p21.3	LPL	rs12678919-A	0.8755	5E-9		0.0415	[0.028-0.055] unit decrease	Illumina [7094228] (imputed)	N
736	chr8	19844221	19844222	rs12678919	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	8p21.3	NR	rs12678919-?	NR	6E-29		0.07569062	[0.062-0.089] unit decrease	Illumina [31978265] (imputed)	N
736	chr8	19844221	19844222	rs12678919	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	8p21.3	NR	rs12678919-?	NR	8E-24		1.947547	[1.57-2.33] unit increase	Illumina [31978362] (imputed)	N
736	chr8	19844221	19844222	rs12678919	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	Triglyceride levels	up to 23,508 African ancestry individuals, 4,649 Asian ancestry individuals, up to 77,047 European ancestry individuals, 6,705 Hispanic individuals	NA	8p21.3		rs12678919-A	0.8969	3E-52	(EA)	0.0656	[0.057-0.074] unit increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
736	chr8	19844221	19844222	rs12678919	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	HDL cholesterol levels	up to 23,761 African ancestry individuals, 13,171 Asian ancestry individuals, up to 90,272 European ancestry individuals, 6,620 Hispanic individuals	NA	8p21.3		rs12678919-A	0.8963	1E-52		0.0267	[0.023-0.03] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
736	chr8	19844221	19844222	rs12678919	30911093	Bandesh K	2019-03-25	J Hum Genet	Genome-wide association study of blood lipids in Indians confirms universality of established variants.	Triglyceride levels	1,036 Indian ancestry individuals	4,235 Indian ancestry individuals, 188,577 European ancestry individuals, 7,898 East Asian, South Asian and African ancestry individuals	8p21.3	LPL	rs12678919-?	NR	1E-7	(Indian)			Illumina [551825]	N
736	chr8	19844221	19844222	rs12678919	30911093	Bandesh K	2019-03-25	J Hum Genet	Genome-wide association study of blood lipids in Indians confirms universality of established variants.	High density lipoprotein cholesterol levels	1,036 Indian ancestry individuals	4,235 Indian ancestry individuals, 188,577 European ancestry individuals, 7,898 East Asian, South Asian and African ancestry individuals	8p21.3	LPL	rs12678919-G	0.09	4E-11	(Indian)	2.59	[1.83-3.35] unit increase	Illumina [551825]	N
736	chr8	19844221	19844222	rs12678919	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p21.3	NR	rs12678919-A	NR	4E-179		0.171	unit increase	Affymetrix [at least 7091467] (imputed)	N
736	chr8	19844221	19844222	rs12678919	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p21.3	NR	rs12678919-A	0.917	2E-15	(Hispanic)	0.195	unit increase	Affymetrix [at least 7091467] (imputed)	N
736	chr8	19844221	19844222	rs12678919	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p21.3	NR	rs12678919-A	0.892	2E-147	(EA)	0.17	unit increase	Affymetrix [at least 7091467] (imputed)	N
736	chr8	19844221	19844222	rs12678919	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p21.3	NR	rs12678919-A	0.889	4E-17	(East Asian)	0.193	unit increase	Affymetrix [at least 7091467] (imputed)	N
736	chr8	19844221	19844222	rs12678919	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p21.3	NR	rs12678919-A	NR	3E-111		0.123	unit decrease	Affymetrix [at least 7091467] (imputed)	N
736	chr8	19844221	19844222	rs12678919	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p21.3	NR	rs12678919-A	0.917	3E-13	(Hispanic)	0.162	unit decrease	Affymetrix [at least 7091467] (imputed)	N
736	chr8	19844221	19844222	rs12678919	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p21.3	NR	rs12678919-A	0.892	1E-87	(EA)	0.118	unit decrease	Affymetrix [at least 7091467] (imputed)	N
736	chr8	19844221	19844222	rs12678919	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p21.3	NR	rs12678919-A	0.889	4E-13	(East Asian)	0.154	unit decrease	Affymetrix [at least 7091467] (imputed)	N
736	chr8	19844221	19844222	rs12678919	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Triglyceride levels	28,183 East Asian ancestry individuals, 177,861 European ancestry individuals	10,857 Chinese ancestry individuals	8p21.3	LPL	rs12678919-A	0.895	3E-26	(Asian initial, BMI unadjusted)	0.15	[0.12-0.18] unit increase	Affymetrix, Illumina [up to 1900000] (imputed)	N
736	chr8	19844221	19844222	rs12678919	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Triglyceride levels	28,183 East Asian ancestry individuals, 177,861 European ancestry individuals	10,857 Chinese ancestry individuals	8p21.3	LPL	rs12678919-A	0.879	5E-217	(Trans-ethnic initial)	0.17	[0.16-0.18] unit increase (EA Beta values)	Affymetrix, Illumina [up to 1900000] (imputed)	N
736	chr8	19844221	19844222	rs12678919	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	HDL cholesterol levels	34,930 East Asian ancestry individuals, 187,167 European ancestry individuals	8,741 Chinese ancestry individuals	8p21.3	LPL	rs12678919-A	0.897	1E-36	(Asian initial, BMI unadjusted)	0.163	[0.14-0.19] unit decrease	Affymetrix, Illumina [~ 1900000] (imputed)	N
736	chr8	19844221	19844222	rs12678919	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	HDL cholesterol levels	34,930 East Asian ancestry individuals, 187,167 European ancestry individuals	8,741 Chinese ancestry individuals	8p21.3	LPL	rs12678919-A	0.879	4E-176	(Trans-ethnic initial)	0.155	[0.14-0.17] unit decrease (EA Beta values)	Affymetrix, Illumina [~ 1900000] (imputed)	N
736	chr8	19844221	19844222	rs12678919	26763881	Kurano M	2016-01-14	J Hum Genet	Genome-wide association study of serum lipids confirms previously reported associations as well as new associations of common SNPs within PCSK7 gene with triglyceride.	Triglyceride levels	2,994 Japanese ancestry individuals	6,805 Korean ancestry individuals	8p21.3	LPL, RPL30P9	rs12678919-A		2E-8	(Japanese)	0.23	[0.15-0.31] unit decrease	Illumina [1294241]	N
736	chr8	19844221	19844222	rs12678919	26690388	Tang CS	2015-12-22	Nat Commun	Exome-wide association analysis reveals novel coding sequence variants associated with lipid traits in Chinese.	Total triglycerides levels	12,685 Chinese ancestry individuals	NA	8p21.3	LPL	rs12678919-G	0.091	2E-17		0.186	[0.14-0.23] unit decrease	Illumina [286795]	N
736	chr8	19844221	19844222	rs12678919	26582766	Lu X	2015-11-18	Circ Cardiovasc Genet	Genetic Susceptibility to Lipid Levels and Lipid Change Over Time and Risk of Incident Hyperlipidemia in Chinese Populations.	Triglycerides	8,344 Han Chinese ancestry individuals	14,739 Han Chinese ancestry individuals	8p21.3	LPL	rs12678919-A	0.91	4E-25		0.044	[0.036-0.052] unit increase	Affymetrix, Illumina [2573667] (imputed)	N
736	chr8	19844221	19844222	rs12678919	26582766	Lu X	2015-11-18	Circ Cardiovasc Genet	Genetic Susceptibility to Lipid Levels and Lipid Change Over Time and Risk of Incident Hyperlipidemia in Chinese Populations.	HDL cholesterol	8,344 Han Chinese ancestry individuals	14,739 Han Chinese ancestry individuals	8p21.3	LPL	rs12678919-A	0.91	2E-21		1.954	[1.55-2.35] unit decrease	Affymetrix, Illumina [2573667] (imputed)	N
736	chr8	19844221	19844222	rs12678919	26160806	Proust C	2015-08-01	Circ Cardiovasc Genet	Contribution of Rare and Common Genetic Variants to Plasma Lipid Levels and Carotid Stiffness and Geometry: A Substudy of the Paris Prospective Study 3.	Triglycerides	3,681 individuals	NA	8p21.3	LPL	rs12678919-G	0.11	3E-11		0.0992	[0.070-0.128] unit decrease	Illumina [101597]	N
736	chr8	19844221	19844222	rs12678919	26160806	Proust C	2015-08-01	Circ Cardiovasc Genet	Contribution of Rare and Common Genetic Variants to Plasma Lipid Levels and Carotid Stiffness and Geometry: A Substudy of the Paris Prospective Study 3.	HDL cholesterol	3,681 individuals	NA	8p21.3	LPL	rs12678919-G	0.11	3E-10		0.053	[0.037-0.069] unit increase	Illumina [101597]	N
736	chr8	19844221	19844222	rs12678919	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Triglycerides	94,595 European ancestry individuals	93,982 European ancestry individuals	8p21.3	LPL	rs12678919-G	0.13	2E-199		0.17	[NR] mg/dL decrease	NR [NR] (imputed)	N
736	chr8	19844221	19844222	rs12678919	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	8p21.3	LPL	rs12678919-G	0.13	1E-149		0.155	[NR] unit increase	NR [NR] (imputed)	N
736	chr8	19844221	19844222	rs12678919	22916037	Inouye M	2012-08-16	PLoS Genet	Novel Loci for metabolic networks and multi-tissue expression studies reveal genes for atherosclerosis.	Metabolite levels	6,608 European ancestry individuals	NA	8p21.3	LPL	rs12678919-?	0.09	9E-13				Illumina [~ 2000000] (imputed)	N
736	chr8	19844221	19844222	rs12678919	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	Triglycerides	96,598 European ancestry individuals	NA	8p21.3	LPL	rs12678919-G	0.12	2E-115		13.64	[12.37-14.91] mg/dL decrease	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
736	chr8	19844221	19844222	rs12678919	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	HDL cholesterol	99,900 European ancestry individuals	NA	8p21.3	LPL	rs12678919-G	0.12	1E-97		2.25	[2.01-2.49] mg/dL increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
736	chr8	19844221	19844222	rs12678919	20139978	Kamatani Y	2010-02-07	Nat Genet	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Hematological and biochemical traits	Up to 14,402 Japanese individuals	NA	8p21.3	LPL	rs12678919-G	0.18	9E-6	(HDL)	0.125	[0.070-0.180] unit increase	Illumina [561583]	N
736	chr8	19844221	19844222	rs12678919	19060906	Kathiresan S	2008-12-07	Nat Genet	Common variants at 30 loci contribute to polygenic dyslipidemia.	Triglycerides	19,840 European ancestry individuals	Up to 20,623 European ancestry individuals	8p21.3	LPL	rs12678919-G	0.10	2E-41		0.25	[0.19-0.31] s.d. decrease	Affymetrix, Illumina [~ 2600000] (imputed)	N
736	chr8	19844221	19844222	rs12678919	19060906	Kathiresan S	2008-12-07	Nat Genet	Common variants at 30 loci contribute to polygenic dyslipidemia.	HDL cholesterol	19,840 European ancestry individuals	Up to 20,623 European ancestry individuals	8p21.3	LPL	rs12678919-G	0.10	2E-34		0.23	[0.17-0.29] s.d. increase	Affymetrix, Illumina [~ 2600000] (imputed)	N
736	chr8	19844227	19844228	rs34770253	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p21.3	NR	rs34770253-T	NR	7E-17		0.037	unit increase	Affymetrix [at least 7091467] (imputed)	N
736	chr8	19844227	19844228	rs34770253	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p21.3	NR	rs34770253-T	0.797	2E-15	(EA)	0.038	unit increase	Affymetrix [at least 7091467] (imputed)	N
736	chr8	19844227	19844228	rs34770253	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p21.3	NR	rs34770253-T	NR	3E-17		0.034	unit decrease	Affymetrix [at least 7091467] (imputed)	N
736	chr8	19844227	19844228	rs34770253	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p21.3	NR	rs34770253-T	0.797	7E-16	(EA)	0.035	unit decrease	Affymetrix [at least 7091467] (imputed)	N
736	chr8	19844414	19844415	rs7819706	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large HDL	115,082 European ancestry individuals	NA	8p21.3		rs7819706-A	0.881703	5E-50		0.0902323	[0.078-0.102] unit increase	NR [11722792] (imputed)	N
736	chr8	19844414	19844415	rs7819706	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of linoleic acid to total fatty acids	115,006 European ancestry individuals	NA	8p21.3		rs7819706-A	0.881712	5E-28		0.0675482	[0.055-0.08] unit decrease	NR [11722792] (imputed)	N
736	chr8	19844414	19844415	rs7819706	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	8p21.3		rs7819706-A	0.881702	5E-12		0.042073	[0.03-0.054] unit decrease	NR [11722792] (imputed)	N
736	chr8	19844414	19844415	rs7819706	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs7819706-C	NR	4E-10		0.059	[0.041-0.077] unit increase	Illumina [6720657] (imputed)	N
736	chr8	19844438	19844439	rs115129770	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(53:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs115129770-T	NR	1E-29		0.149	[0.12-0.17] unit decrease	Illumina [6720657] (imputed)	N
736	chr8	19844438	19844439	rs115129770	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(53:2)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs115129770-G	NR	1E-29		0.1349	[0.11-0.16] unit increase	Illumina [6720657] (imputed)	N
736	chr8	19844438	19844439	rs115129770	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs115129770-A	NR	1E-29		0.0707	[0.059-0.083] unit increase	Illumina [6720657] (imputed)	N
736	chr8	19844438	19844439	rs115129770	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs115129770-A	NR	9E-30		0.1388	[0.11-0.16] unit decrease	Illumina [6720657] (imputed)	N
736	chr8	19844438	19844439	rs115129770	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs115129770-A	NR	1E-29		0.0919	[0.076-0.108] unit increase	Illumina [6720657] (imputed)	N
736	chr8	19844438	19844439	rs115129770	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:1)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs115129770-G	NR	1E-29		0.0917	[0.076-0.108] unit increase	Illumina [6720657] (imputed)	N
736	chr8	19845375	19845376	rs7841189	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_52:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs7841189-T	NR	2E-10		0.143221	[0.099-0.187] unit decrease	Affymetrix [87696910] (imputed)	N
736	chr8	19845375	19845376	rs7841189	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_46:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs7841189-T	NR	8E-13		0.150634	[0.11-0.19] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19845375	19845376	rs7841189	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_45:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs7841189-T	NR	3E-10		0.112064	[0.077-0.147] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19845375	19845376	rs7841189	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_40:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs7841189-T	NR	2E-12		0.149484	[0.11-0.19] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19845375	19845376	rs7841189	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_38:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs7841189-T	NR	4E-15		0.140238	[0.11-0.18] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19845375	19845376	rs7841189	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_36:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs7841189-T	NR	4E-12		0.120491	[0.086-0.155] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19845375	19845376	rs7841189	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_36:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs7841189-T	NR	3E-14		0.136401	[0.1-0.17] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19845375	19845376	rs7841189	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_36:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs7841189-T	NR	2E-14		0.13389	[0.1-0.168] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19845375	19845376	rs7841189	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_34:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs7841189-T	NR	1E-11		0.113986	[0.081-0.147] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19845375	19845376	rs7841189	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_34:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs7841189-T	NR	3E-13		0.133096	[0.097-0.169] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19845375	19845376	rs7841189	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_34:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs7841189-T	NR	3E-13		0.129117	[0.094-0.164] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19845375	19845376	rs7841189	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs7841189-G	NR	4E-10		0.0637	[0.044-0.084] unit increase	Illumina [6720657] (imputed)	N
736	chr8	19845375	19845376	rs7841189	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_34:3_[M+H]1+/Phosphatidylcholine-P_34:2_[M+H]1+/Phosphatidylethanolamine-P_37:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs7841189-T	NR	2E-11		0.123333	[0.087-0.159] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19845375	19845376	rs7841189	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_34:1_[M+H]1+/Phosphatidylcholine-P_34:0_[M+H]1+/Phosphatidylethanolamine-O_37:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs7841189-T	NR	4E-11		0.114764	[0.081-0.149] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19845375	19845376	rs7841189	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_32:1_[M+H]1+/Phosphatidylcholine-P_32:0_[M+H]1+/Phosphatidylethanolamine-O_35:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs7841189-T	NR	4E-13		0.131012	[0.096-0.166] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19845375	19845376	rs7841189	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_31:0_[M+H]1+/Phosphatidylethanolamine-O_34:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs7841189-T	NR	4E-10		0.110591	[0.076-0.145] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19845375	19845376	rs7841189	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_44:7_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs7841189-T	NR	2E-13		0.129499	[0.095-0.164] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19845375	19845376	rs7841189	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_36:3_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs7841189-T	NR	7E-12		0.111188	[0.079-0.143] unit decrease	Affymetrix [87696910] (imputed)	N
736	chr8	19845375	19845376	rs7841189	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_36:2_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs7841189-T	NR	4E-12		0.111026	[0.08-0.142] unit decrease	Affymetrix [87696910] (imputed)	N
736	chr8	19845375	19845376	rs7841189	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_34:2_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs7841189-T	NR	5E-13		0.115086	[0.084-0.146] unit decrease	Affymetrix [87696910] (imputed)	N
736	chr8	19845375	19845376	rs7841189	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_34:1_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs7841189-T	NR	3E-12		0.113479	[0.082-0.145] unit decrease	Affymetrix [87696910] (imputed)	N
736	chr8	19845375	19845376	rs7841189	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	8p21.3	LPL	rs7841189-?	NR	9E-10	(ApoB)	0.0511349	NR unit decrease	Illumina [609262]	N
736	chr8	19845375	19845376	rs7841189	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	8p21.3	LPL	rs7841189-?	NR	8E-12	(VLDL_D)	0.069576606	NR unit decrease	Illumina [609262]	N
736	chr8	19845375	19845376	rs7841189	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	8p21.3	LPL	rs7841189-?	NR	5E-10	(M_VLDL_L)	0.06639333	NR unit decrease	Illumina [609262]	N
736	chr8	19845375	19845376	rs7841189	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	8p21.3	LPL	rs7841189-?	NR	1E-14	(S_VLDL_TG)	0.08358828	NR unit decrease	Illumina [609262]	N
736	chr8	19845375	19845376	rs7841189	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	8p21.3	LPL	rs7841189-?	NR	6E-14	(S_VLDL_TG)	0.09376893	NR unit decrease	Illumina [609262]	N
736	chr8	19845375	19845376	rs7841189	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	8p21.3	LPL	rs7841189-?	NR	5E-9	(M_VLDL_L)	0.085779935	NR unit decrease	Illumina [609262]	N
736	chr8	19845375	19845376	rs7841189	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	8p21.3	LPL	rs7841189-?	NR	5E-8	(VLDL_D)	0.06784499	NR unit decrease	Illumina [609262]	N
736	chr8	19845375	19845376	rs7841189	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	8p21.3	LPL	rs7841189-?	NR	2E-6	(ApoB)	0.070771866	NR unit decrease	Illumina [609262]	N
736	chr8	19845375	19845376	rs7841189	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	HDL cholesterol levels	25,169 East Asian ancestry individuals	45,953 East Asian ancestry individuals	8p21.3	LPL	rs7841189-T	0.1	2E-30	(BMI unadjusted)	0.172	[0.14-0.2] unit increase	Affymetrix, Illumina [~ 2400000] (imputed)	N
736	chr8	19845375	19845376	rs7841189	22399527	Kristiansson K	2012-03-07	Circ Cardiovasc Genet	Genome-wide screen for metabolic syndrome susceptibility Loci reveals strong lipid gene contribution but no evidence for common genetic basis for clustering of metabolic syndrome traits.	Metabolic syndrome	2,637 European ancestry cases, 7,927 European ancestry controls	NA	8p21.3	LPL	rs7841189-C	0.90	1E-14	(TG)	0.18	[NR] mmol/l increase	Illumina [1257079] (imputed)	N
736	chr8	19845611	19845612	rs142288236	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	8p21.3	LPL	rs142288236-C	0.985309	2E-22		0.0775348	[0.062-0.093] unit increase	Affymetrix [NR] (imputed)	N
736	chr8	19846313	19846314	rs78458743	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(53:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs78458743-G	NR	4E-10		0.0351	[0.024-0.046] unit increase	Illumina [6720657] (imputed)	N
736	chr8	19846313	19846314	rs78458743	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(53:2)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs78458743-G	NR	4E-10		0.0496	[0.034-0.065] unit decrease	Illumina [6720657] (imputed)	N
736	chr8	19846313	19846314	rs78458743	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs78458743-G	NR	4E-10		0.0784	[0.054-0.103] unit decrease	Illumina [6720657] (imputed)	N
736	chr8	19846313	19846314	rs78458743	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs78458743-G	NR	4E-10		0.0783	[0.054-0.103] unit increase	Illumina [6720657] (imputed)	N
736	chr8	19846313	19846314	rs78458743	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs78458743-G	NR	4E-10		0.0787	[0.054-0.103] unit decrease	Illumina [6720657] (imputed)	N
736	chr8	19846313	19846314	rs78458743	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:1)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs78458743-C	NR	4E-10		0.0624	[0.043-0.082] unit increase	Illumina [6720657] (imputed)	N
736	chr8	19846488	19846489	rs114566157	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(53:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs114566157-T	NR	8E-30		0.08	[0.066-0.094] unit increase	Illumina [6720657] (imputed)	N
736	chr8	19846488	19846489	rs114566157	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs114566157-G	NR	7E-30		0.1247	[0.1-0.15] unit decrease	Illumina [6720657] (imputed)	N
736	chr8	19846488	19846489	rs114566157	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs114566157-C	NR	7E-30		0.0712	[0.059-0.084] unit increase	Illumina [6720657] (imputed)	N
736	chr8	19846488	19846489	rs114566157	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs114566157-T	NR	7E-30		0.0709	[0.059-0.083] unit increase	Illumina [6720657] (imputed)	N
736	chr8	19846488	19846489	rs114566157	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:1)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs114566157-T	NR	7E-30		0.1349	[0.11-0.16] unit increase	Illumina [6720657] (imputed)	N
736	chr8	19847059	19847060	rs12682115	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs12682115-C	NR	3E-26		0.1327	[0.11-0.16] unit increase	Illumina [6720657] (imputed)	N
736	chr8	19847059	19847060	rs12682115	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs12682115-C	NR	3E-26		0.0786	[0.064-0.093] unit decrease	Illumina [6720657] (imputed)	N
736	chr8	19847059	19847060	rs12682115	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs12682115-T	NR	3E-26		0.1126	[0.092-0.133] unit decrease	Illumina [6720657] (imputed)	N
736	chr8	19847059	19847060	rs12682115	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:1)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs12682115-C	NR	3E-26		0.0786	[0.064-0.093] unit decrease	Illumina [6720657] (imputed)	N
736	chr8	19847059	19847060	rs12682115	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8p21.3	NR	rs12682115-A	0.103027	4E-11				Affymetrix, Illumina [19872809] (imputed)	N
736	chr8	19847222	19847223	rs78013771	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(53:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs78013771-T	NR	4E-10		0.0836	[0.057-0.11] unit increase	Illumina [6720657] (imputed)	N
736	chr8	19847222	19847223	rs78013771	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs78013771-C	NR	4E-10		0.1044	[0.072-0.137] unit increase	Illumina [6720657] (imputed)	N
736	chr8	19847222	19847223	rs78013771	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs78013771-C	NR	4E-10		0.0212	[0.015-0.028] unit decrease	Illumina [6720657] (imputed)	N
736	chr8	19847222	19847223	rs78013771	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs78013771-G	NR	4E-10		0.1036	[0.071-0.136] unit decrease	Illumina [6720657] (imputed)	N
736	chr8	19847222	19847223	rs78013771	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:1)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs78013771-G	NR	4E-10		0.0475	[0.033-0.062] unit decrease	Illumina [6720657] (imputed)	N
736	chr8	19847440	19847441	rs76496571	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(53:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs76496571-A	NR	3E-10		0.0899	[0.062-0.118] unit decrease	Illumina [6720657] (imputed)	N
736	chr8	19847440	19847441	rs76496571	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs76496571-C	NR	3E-10		0.0775	[0.053-0.102] unit decrease	Illumina [6720657] (imputed)	N
736	chr8	19847440	19847441	rs76496571	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs76496571-T	NR	3E-10		0.104	[0.071-0.137] unit decrease	Illumina [6720657] (imputed)	N
736	chr8	19847440	19847441	rs76496571	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs76496571-C	NR	3E-10		0.0792	[0.055-0.104] unit decrease	Illumina [6720657] (imputed)	N
736	chr8	19847440	19847441	rs76496571	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:1)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs76496571-T	NR	3E-10		0.0822	[0.057-0.108] unit increase	Illumina [6720657] (imputed)	N
736	chr8	19847644	19847645	rs117956669	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	8p21.3	NR	rs117956669-G	NR	2E-9		0.0703	[0.047-0.093] unit decrease	Affymetrix [9000000] (imputed)	N
736	chr8	19847689	19847690	rs10503669	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_46:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs10503669-A	NR	3E-10		0.144365	[0.1-0.189] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19847689	19847690	rs10503669	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_38:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs10503669-A	NR	1E-13		0.144882	[0.11-0.18] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19847689	19847690	rs10503669	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_36:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs10503669-A	NR	6E-13		0.136613	[0.099-0.174] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19847689	19847690	rs10503669	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_36:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs10503669-A	NR	1E-14		0.151774	[0.11-0.19] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19847689	19847690	rs10503669	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_36:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs10503669-A	NR	8E-15		0.148317	[0.11-0.19] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19847689	19847690	rs10503669	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_34:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs10503669-A	NR	1E-10		0.117972	[0.082-0.154] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19847689	19847690	rs10503669	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_34:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs10503669-A	NR	1E-12		0.141465	[0.1-0.18] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19847689	19847690	rs10503669	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_34:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs10503669-A	NR	2E-12		0.13659	[0.099-0.174] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19847689	19847690	rs10503669	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_32:1_[M+H]1+/Phosphatidylcholine-P_32:0_[M+H]1+/Phosphatidylethanolamine-O_35:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs10503669-A	NR	5E-12		0.136441	[0.098-0.175] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19847689	19847690	rs10503669	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_44:7_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs10503669-A	NR	1E-12		0.137195	[0.1-0.175] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19847689	19847690	rs10503669	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_36:3_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs10503669-A	NR	6E-12		0.122005	[0.087-0.157] unit decrease	Affymetrix [87696910] (imputed)	N
736	chr8	19847689	19847690	rs10503669	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_36:2_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs10503669-A	NR	2E-11		0.117807	[0.084-0.152] unit decrease	Affymetrix [87696910] (imputed)	N
736	chr8	19847689	19847690	rs10503669	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_34:2_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs10503669-A	NR	8E-12		0.119132	[0.085-0.153] unit decrease	Affymetrix [87696910] (imputed)	N
736	chr8	19847689	19847690	rs10503669	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_34:1_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs10503669-A	NR	8E-11		0.115405	[0.081-0.15] unit decrease	Affymetrix [87696910] (imputed)	N
736	chr8	19847689	19847690	rs10503669	31910446	Oh SW	2020-01-07	PLoS One	Genome-wide association study of metabolic syndrome in Korean populations.	Hypertriglyceridemia	7,423 Korean ancestry cases and controls	NA	8p21.3	NR	rs10503669-?	NR	3E-6		1.4044943	[1.22-1.62]	Affymetrix [at least 584061] (imputed)	N
736	chr8	19847689	19847690	rs10503669	31902109	Li D	2020-01-04	Genes Genomics	Progressive effects of single-nucleotide polymorphisms on 16 phenotypic traits based on longitudinal data.	Cholesterol	6,840 Korean ancestry individuals	NA	8p21.3	LPL, SLC18A1	rs10503669-T	0.1207	2E-16	(TG)	0.08902	NR unit decrease	Affymetrix [305158]	N
736	chr8	19847689	19847690	rs10503669	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	8p21.3	NR	rs10503669-?	NR	6E-32		0.0898103	[0.075-0.105] unit decrease	Illumina [31978265] (imputed)	N
736	chr8	19847689	19847690	rs10503669	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	8p21.3	NR	rs10503669-?	NR	7E-22		2.043279	[1.63-2.46] unit increase	Illumina [31978362] (imputed)	N
736	chr8	19847689	19847690	rs10503669	30718733	Moon S	2019-02-04	Sci Rep	The Korea Biobank Array: Design and Identification of Coding Variants Associated with Blood Biochemical Traits.	Triglyceride levels	6,949 Korean ancestry individuals	6,000 Korean ancestry individuals	8p21.3	LPL	rs10503669-?		1E-12				Affymetrix [at least 805769] (imputed)	N
736	chr8	19847689	19847690	rs10503669	30718733	Moon S	2019-02-04	Sci Rep	The Korea Biobank Array: Design and Identification of Coding Variants Associated with Blood Biochemical Traits.	High density lipoprotein cholesterol levels	6,949 Korean ancestry individuals	6,000 Korean ancestry individuals	8p21.3	LPL	rs10503669-?		1E-11				Affymetrix [at least 805769] (imputed)	N
736	chr8	19847689	19847690	rs10503669	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Triglyceride levels	18,421 East Asian ancestry individuals	38,060 East Asian ancestry individuals	8p21.3	LPL	rs10503669-A	0.11	1E-19	(BMI unadjusted)	0.16	[0.13-0.19] unit decrease	Affymetrix, Illumina [~ 2400000] (imputed)	N
736	chr8	19847689	19847690	rs10503669	21909109	Kim YJ	2011-09-11	Nat Genet	Large-scale genome-wide association studies in East Asians identify new genetic loci influencing metabolic traits.	Triglycerides	12,545 Korean ancestry individuals	Up to 30,395 East Asian ancestry individuals	8p21.3	LPL	rs10503669-T	0.12	7E-39		0.0857	[0.073-0.098] mg/dL decrease	Affymetrix [~ 2200000] (imputed)	N
736	chr8	19847689	19847690	rs10503669	21909109	Kim YJ	2011-09-11	Nat Genet	Large-scale genome-wide association studies in East Asians identify new genetic loci influencing metabolic traits.	HDL cholesterol	12,545 Korean ancestry individuals	Up to 30,395 East Asian ancestry individuals	8p21.3	LPL	rs10503669-T	0.12	8E-43		0.0426	[0.037-0.049] mg/dL increase	Affymetrix [~ 2200000] (imputed)	N
736	chr8	19847689	19847690	rs10503669	18193043	Willer CJ	2008-01-13	Nat Genet	Newly identified loci that influence lipid concentrations and risk of coronary artery disease.	Triglycerides	8,684 European ancestry individuals	9,741 European ancestry individuals	8p21.3	LPL	rs10503669-C	0.90	4E-22		11.57	[NR] mg/dl increase	Affymetrix, Illumina [~ 2261000] (imputed)	N
736	chr8	19847689	19847690	rs10503669	18193043	Willer CJ	2008-01-13	Nat Genet	Newly identified loci that influence lipid concentrations and risk of coronary artery disease.	HDL cholesterol	8,656 European ancestry individuals	11,437 European ancestry individuals	8p21.3	LPL	rs10503669-A	0.1	4E-19		2.09	[NR] mg/dl increase	Affymetrix, Illumina [~ 2261000] (imputed)	N
736	chr8	19848079	19848080	rs17410962	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs17410962-G	NR	6E-22		0.0555	[0.044-0.067] unit increase	Illumina [6720657] (imputed)	N
736	chr8	19848079	19848080	rs17410962	31910446	Oh SW	2020-01-07	PLoS One	Genome-wide association study of metabolic syndrome in Korean populations.	Hypertriglyceridemia	7,423 Korean ancestry cases and controls	NA	8p21.3	NR	rs17410962-?	NR	4E-6		1.3927578	[1.21-1.6]	Affymetrix [at least 584061] (imputed)	N
736	chr8	19848079	19848080	rs17410962	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	8p21.3	NR	rs17410962-?	NR	1E-33		0.0684673	[0.057-0.08] unit decrease	Illumina [31978265] (imputed)	N
736	chr8	19848079	19848080	rs17410962	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	8p21.3	NR	rs17410962-?	NR	8E-29		1.800972	[1.48-2.12] unit increase	Illumina [31978362] (imputed)	N
736	chr8	19848079	19848080	rs17410962	29615537	Kulminski AM	2018-03-01	Aging (Albany NY)	Strong impact of natural-selection-free heterogeneity in genetics of age-related phenotypes.	Triglyceride levels	up to 33,431 European ancestry individuals	NA	8p21.3	LPL	rs17410962-A	0.1366	5E-28		8.334999	[6.85-9.82] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
736	chr8	19848079	19848080	rs17410962	29615537	Kulminski AM	2018-03-01	Aging (Albany NY)	Strong impact of natural-selection-free heterogeneity in genetics of age-related phenotypes.	High density lipoprotein cholesterol levels	up to 33,431 European ancestry individuals	NA	8p21.3	LPL	rs17410962-A	0.1366	8E-32		3.9662154	[3.3-4.63] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
736	chr8	19848079	19848080	rs17410962	23726366	Coram MA	2013-05-29	Am J Hum Genet	Genome-wide characterization of shared and distinct genetic components that influence blood lipid levels in ethnically diverse human populations.	Triglycerides	7,601 African American individuals, 3,335 Hispanic individuals	7,138 African American individuals	8p21.3	LPL	rs17410962-G	0.112	7E-9	(Hispanic)	0.1064	[NR] unit decrease	Affymetrix [NR]	N
736	chr8	19848116	19848117	rs11781692	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	8p21.3	LPL	rs11781692-C	0.985427	2E-19		0.0749604	[0.059-0.091] unit decrease	Affymetrix [NR] (imputed)	N
736	chr8	19848395	19848396	rs117604010	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	8p21.3	NR	rs117604010-A	NR	4E-70		0.1611	[0.14-0.18] unit decrease	Affymetrix [9000000] (imputed)	N
736	chr8	19848395	19848396	rs117604010	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	8p21.3	NR	rs117604010-A	NR	9E-41		0.1269	[0.11-0.15] unit increase	Affymetrix [9000000] (imputed)	N
736	chr8	19848395	19848396	rs117604010	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	8p21.3	NR	rs117604010-A	NR	1E-19		0.0864	[0.068-0.105] unit increase	Affymetrix [9000000] (imputed)	N
736	chr8	19848498	19848499	rs17489185	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(53:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs17489185-G	NR	6E-14		0.052	[0.038-0.066] unit decrease	Illumina [6720657] (imputed)	N
736	chr8	19848498	19848499	rs17489185	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs17489185-T	NR	6E-14		0.0657	[0.049-0.083] unit increase	Illumina [6720657] (imputed)	N
736	chr8	19848498	19848499	rs17489185	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs17489185-G	NR	6E-14		0.0655	[0.048-0.083] unit decrease	Illumina [6720657] (imputed)	N
736	chr8	19848498	19848499	rs17489185	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs17489185-G	NR	6E-14		0.1303	[0.096-0.164] unit increase	Illumina [6720657] (imputed)	N
736	chr8	19848498	19848499	rs17489185	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:1)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs17489185-G	NR	6E-14		0.0923	[0.068-0.116] unit decrease	Illumina [6720657] (imputed)	N
736	chr8	19848692	19848693	rs17410983	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs17410983-T	NR	6E-22		0.0616	[0.049-0.074] unit increase	Illumina [6720657] (imputed)	N
736	chr8	19848692	19848693	rs17410983	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs17410983-C	NR	6E-22		0.0624	[0.05-0.075] unit increase	Illumina [6720657] (imputed)	N
736	chr8	19848692	19848693	rs17410983	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs17410983-G	NR	6E-22		0.097	[0.077-0.117] unit decrease	Illumina [6720657] (imputed)	N
736	chr8	19848692	19848693	rs17410983	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:1)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs17410983-C	NR	6E-22		0.09	[0.072-0.108] unit decrease	Illumina [6720657] (imputed)	N
736	chr8	19848877	19848878	rs17489226	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs17489226-A	NR	6E-14		0.0541	[0.04-0.068] unit decrease	Illumina [6720657] (imputed)	N
736	chr8	19848877	19848878	rs17489226	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs17489226-C	NR	6E-14		0.0604	[0.045-0.076] unit increase	Illumina [6720657] (imputed)	N
736	chr8	19848877	19848878	rs17489226	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs17489226-C	NR	6E-14		0.0878	[0.065-0.111] unit decrease	Illumina [6720657] (imputed)	N
736	chr8	19848877	19848878	rs17489226	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:1)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs17489226-G	NR	6E-14		0.0658	[0.049-0.083] unit decrease	Illumina [6720657] (imputed)	N
736	chr8	19849271	19849272	rs17410996	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs17410996-C	NR	7E-22		0.0819	[0.065-0.099] unit decrease	Illumina [6720657] (imputed)	N
736	chr8	19849271	19849272	rs17410996	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs17410996-T	NR	7E-22		0.1788	[0.14-0.22] unit decrease	Illumina [6720657] (imputed)	N
736	chr8	19849271	19849272	rs17410996	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs17410996-C	NR	7E-22		0.0776	[0.062-0.093] unit decrease	Illumina [6720657] (imputed)	N
736	chr8	19849271	19849272	rs17410996	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:1)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs17410996-G	NR	7E-22		0.1788	[0.14-0.22] unit decrease	Illumina [6720657] (imputed)	N
736	chr8	19849669	19849670	rs75801420	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs75801420-G	NR	3E-10		0.0842	[0.058-0.11] unit increase	Illumina [6720657] (imputed)	N
736	chr8	19849669	19849670	rs75801420	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs75801420-G	NR	3E-10		0.0595	[0.041-0.078] unit increase	Illumina [6720657] (imputed)	N
736	chr8	19849669	19849670	rs75801420	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs75801420-C	NR	3E-10		0.0786	[0.054-0.103] unit decrease	Illumina [6720657] (imputed)	N
736	chr8	19849669	19849670	rs75801420	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:1)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs75801420-A	NR	3E-10		0.0382	[0.026-0.05] unit decrease	Illumina [6720657] (imputed)	N
736	chr8	19849756	19849757	rs17091905	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_46:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs17091905-A	NR	3E-12		0.145028	[0.1-0.19] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19849756	19849757	rs17091905	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_40:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs17091905-A	NR	6E-12		0.144248	[0.1-0.19] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19849756	19849757	rs17091905	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_38:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs17091905-A	NR	4E-15		0.13833	[0.1-0.17] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19849756	19849757	rs17091905	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_36:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs17091905-A	NR	6E-12		0.118067	[0.084-0.152] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19849756	19849757	rs17091905	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_36:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs17091905-A	NR	8E-14		0.132735	[0.098-0.168] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19849756	19849757	rs17091905	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_36:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs17091905-A	NR	5E-14		0.130161	[0.096-0.164] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19849756	19849757	rs17091905	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_34:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs17091905-A	NR	4E-11		0.10966	[0.077-0.142] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19849756	19849757	rs17091905	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_34:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs17091905-A	NR	3E-12		0.125929	[0.091-0.161] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19849756	19849757	rs17091905	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_34:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs17091905-A	NR	2E-12		0.122913	[0.089-0.157] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19849756	19849757	rs17091905	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_34:3_[M+H]1+/Phosphatidylcholine-P_34:2_[M+H]1+/Phosphatidylethanolamine-P_37:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs17091905-A	NR	2E-10		0.115413	[0.08-0.151] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19849756	19849757	rs17091905	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_34:1_[M+H]1+/Phosphatidylcholine-P_34:0_[M+H]1+/Phosphatidylethanolamine-O_37:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs17091905-A	NR	2E-10		0.10984	[0.076-0.144] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19849756	19849757	rs17091905	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_32:1_[M+H]1+/Phosphatidylcholine-P_32:0_[M+H]1+/Phosphatidylethanolamine-O_35:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs17091905-A	NR	4E-12		0.123861	[0.089-0.159] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19849756	19849757	rs17091905	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_44:7_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs17091905-A	NR	1E-12		0.123324	[0.089-0.157] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19849756	19849757	rs17091905	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_36:3_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs17091905-A	NR	6E-11		0.105006	[0.074-0.136] unit decrease	Affymetrix [87696910] (imputed)	N
736	chr8	19849756	19849757	rs17091905	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_36:2_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs17091905-A	NR	4E-11		0.104607	[0.074-0.136] unit decrease	Affymetrix [87696910] (imputed)	N
736	chr8	19849756	19849757	rs17091905	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_34:2_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs17091905-A	NR	2E-12		0.110538	[0.08-0.141] unit decrease	Affymetrix [87696910] (imputed)	N
736	chr8	19849756	19849757	rs17091905	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_34:1_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs17091905-A	NR	2E-11		0.108297	[0.077-0.14] unit decrease	Affymetrix [87696910] (imputed)	N
736	chr8	19849756	19849757	rs17091905	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	8p21.3	NR	rs17091905-A	NR	9E-509		0.174	[0.17-0.18] unit decrease	Affymetrix [9000000] (imputed)	N
736	chr8	19849756	19849757	rs17091905	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	8p21.3	NR	rs17091905-A	NR	3E-18		0.0316	[0.025-0.039] unit decrease	Affymetrix [9000000] (imputed)	N
736	chr8	19849756	19849757	rs17091905	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	8p21.3	NR	rs17091905-A	NR	8E-395		0.1601	[0.15-0.17] unit increase	Affymetrix [9000000] (imputed)	N
736	chr8	19849756	19849757	rs17091905	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	8p21.3	NR	rs17091905-A	NR	3E-41		0.0487	[0.042-0.056] unit decrease	Affymetrix [9000000] (imputed)	N
736	chr8	19849756	19849757	rs17091905	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	8p21.3	NR	rs17091905-A	NR	3E-200		0.1142	[0.11-0.12] unit increase	Affymetrix [9000000] (imputed)	N
736	chr8	19849756	19849757	rs17091905	21943158	Middelberg RP	2011-09-24	BMC Med Genet	Genetic variants in LPL, OASL and TOMM40/APOE-C1-C2-C4 genes are associated with multiple cardiovascular-related traits.	Cardiovascular disease risk factors	11,683 European ancestry individuals	NA	8p21.3	LPL	rs17091905-A	0.124	6E-12	(HDL)	0.15	[0.11-0.19] mmol/l increase	Illumina [NR] (imputed)	N
736	chr8	19849756	19849757	rs17091905	21943158	Middelberg RP	2011-09-24	BMC Med Genet	Genetic variants in LPL, OASL and TOMM40/APOE-C1-C2-C4 genes are associated with multiple cardiovascular-related traits.	Cardiovascular disease risk factors	11,683 European ancestry individuals	NA	8p21.3	LPL	rs17091905-A	0.12	5E-15	(TRIG)	0.174	[0.13-0.22] mmol/l decrease	Illumina [NR] (imputed)	N
736	chr8	19849988	19849989	rs114964604	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs114964604-C	NR	9E-30		0.1051	[0.087-0.123] unit decrease	Illumina [6720657] (imputed)	N
736	chr8	19849988	19849989	rs114964604	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs114964604-A	NR	8E-30		0.1482	[0.12-0.17] unit decrease	Illumina [6720657] (imputed)	N
736	chr8	19849988	19849989	rs114964604	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs114964604-A	NR	9E-30		0.104	[0.086-0.122] unit decrease	Illumina [6720657] (imputed)	N
736	chr8	19849988	19849989	rs114964604	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:1)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs114964604-T	NR	9E-30		0.0723	[0.06-0.085] unit increase	Illumina [6720657] (imputed)	N
736	chr8	19850098	19850099	rs79407615	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs79407615-G	NR	5E-10		0.0433	[0.03-0.057] unit increase	Illumina [6720657] (imputed)	N
736	chr8	19850098	19850099	rs79407615	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs79407615-G	NR	5E-10		0.1031	[0.071-0.136] unit decrease	Illumina [6720657] (imputed)	N
736	chr8	19850098	19850099	rs79407615	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs79407615-G	NR	5E-10		0.0652	[0.045-0.086] unit decrease	Illumina [6720657] (imputed)	N
736	chr8	19850098	19850099	rs79407615	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:1)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs79407615-A	NR	5E-10		0.0478	[0.033-0.063] unit increase	Illumina [6720657] (imputed)	N
736	chr8	19850098	19850099	rs79407615	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	8p21.3	intergenic	rs79407615-T	0.9025	3E-293		0.1799	[0.17-0.19] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
736	chr8	19851507	19851508	rs76975037	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs76975037-A	NR	4E-10		0.0368	[0.025-0.048] unit decrease	Illumina [6720657] (imputed)	N
736	chr8	19851507	19851508	rs76975037	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs76975037-T	NR	4E-10		0.076	[0.052-0.1] unit decrease	Illumina [6720657] (imputed)	N
736	chr8	19851507	19851508	rs76975037	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs76975037-G	NR	4E-10		0.0467	[0.032-0.061] unit decrease	Illumina [6720657] (imputed)	N
736	chr8	19851507	19851508	rs76975037	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:1)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs76975037-A	NR	4E-10		0.0714	[0.049-0.094] unit decrease	Illumina [6720657] (imputed)	N
736	chr8	19852044	19852045	rs17489268	29615537	Kulminski AM	2018-03-01	Aging (Albany NY)	Strong impact of natural-selection-free heterogeneity in genetics of age-related phenotypes.	Triglyceride levels	up to 33,431 European ancestry individuals	NA	8p21.3	LPL	rs17489268-A	0.2874	2E-42		7.776916	[6.66-8.89] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
736	chr8	19852044	19852045	rs17489268	29615537	Kulminski AM	2018-03-01	Aging (Albany NY)	Strong impact of natural-selection-free heterogeneity in genetics of age-related phenotypes.	High density lipoprotein cholesterol levels	up to 33,431 European ancestry individuals	NA	8p21.3	LPL	rs17489268-A	0.2874	2E-44		3.514711	[3.02-4.01] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
736	chr8	19852133	19852134	rs17411024	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs17411024-T	NR	7E-22		0.0929	[0.074-0.112] unit decrease	Illumina [6720657] (imputed)	N
736	chr8	19852133	19852134	rs17411024	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs17411024-C	NR	7E-22		0.0773	[0.062-0.093] unit increase	Illumina [6720657] (imputed)	N
736	chr8	19852133	19852134	rs17411024	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs17411024-A	NR	7E-22		0.0856	[0.068-0.103] unit increase	Illumina [6720657] (imputed)	N
736	chr8	19852133	19852134	rs17411024	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:1)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs17411024-G	NR	8E-22		0.0994	[0.079-0.12] unit decrease	Illumina [6720657] (imputed)	N
736	chr8	19852176	19852176	rs751484024	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small HDL	115,082 European ancestry individuals	NA	8p21.3		rs751484024-TTC	0.74208	2E-8		0.0265057	[0.017-0.036] unit decrease	NR [11722792] (imputed)	N
736	chr8	19852309	19852310	rs17411031	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting saturated fatty acids	4,734 individuals	NA	8p21.3		rs17411031-G	0.273974353	7E-11		0.152755	[0.11-0.2] mmol/l decrease	Illumina [7701709] (imputed)	N
736	chr8	19852309	19852310	rs17411031	31910446	Oh SW	2020-01-07	PLoS One	Genome-wide association study of metabolic syndrome in Korean populations.	Low HDL-cholesterol levels	7,423 Korean ancestry cases and controls	NA	8p21.3	NR	rs17411031-?	NR	2E-7		1.3623978	[1.21-1.53]	Affymetrix [at least 584061] (imputed)	N
736	chr8	19852309	19852310	rs17411031	31910446	Oh SW	2020-01-07	PLoS One	Genome-wide association study of metabolic syndrome in Korean populations.	Hypertriglyceridemia	7,423 Korean ancestry cases and controls	NA	8p21.3	NR	rs17411031-?	NR	2E-7		1.3550136	[1.21-1.52]	Affymetrix [at least 584061] (imputed)	N
736	chr8	19852309	19852310	rs17411031	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	8p21.3	LPL	rs17411031-G	0.261729325660064	3E-8		0.045	[0.029-0.061] unit decrease	NR [5035015] (imputed)	N
736	chr8	19852490	19852491	rs74444445	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	8p21.3	LPL	rs74444445-T	0.976187	1E-18		0.0591225	[0.046-0.072] unit increase	Affymetrix [NR] (imputed)	N
736	chr8	19852517	19852518	rs17489282	31910446	Oh SW	2020-01-07	PLoS One	Genome-wide association study of metabolic syndrome in Korean populations.	Low HDL-cholesterol levels	7,423 Korean ancestry cases and controls	NA	8p21.3	NR	rs17489282-?	NR	3E-7		1.3513513	[1.2-1.52]	Affymetrix [at least 584061] (imputed)	N
736	chr8	19852517	19852518	rs17489282	31910446	Oh SW	2020-01-07	PLoS One	Genome-wide association study of metabolic syndrome in Korean populations.	Hypertriglyceridemia	7,423 Korean ancestry cases and controls	NA	8p21.3	NR	rs17489282-?	NR	3E-7		1.345895	[1.2-1.51]	Affymetrix [at least 584061] (imputed)	N
736	chr8	19852517	19852518	rs17489282	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	8p21.3	NR	rs17489282-?	NR	1E-24		0.04810074	[0.039-0.057] unit decrease	Illumina [31978265] (imputed)	N
736	chr8	19852517	19852518	rs17489282	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	8p21.3	NR	rs17489282-?	NR	2E-25		1.360809	[1.1-1.62] unit increase	Illumina [31978362] (imputed)	N
736	chr8	19852517	19852518	rs17489282	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p21.3	NR	rs17489282-C	NR	4E-161		0.114	unit increase	Affymetrix [at least 7091467] (imputed)	N
736	chr8	19852517	19852518	rs17489282	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p21.3	NR	rs17489282-C	0.804	3E-12	(East Asian)	0.127	unit increase	Affymetrix [at least 7091467] (imputed)	N
736	chr8	19852517	19852518	rs17489282	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p21.3	NR	rs17489282-C	0.75	2E-15	(Hispanic)	0.124	unit increase	Affymetrix [at least 7091467] (imputed)	N
736	chr8	19852517	19852518	rs17489282	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p21.3	NR	rs17489282-C	0.731	8E-136	(EA)	0.115	unit increase	Affymetrix [at least 7091467] (imputed)	N
736	chr8	19852517	19852518	rs17489282	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p21.3	NR	rs17489282-C	NR	7E-122		0.091	unit decrease	Affymetrix [at least 7091467] (imputed)	N
736	chr8	19852517	19852518	rs17489282	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p21.3	NR	rs17489282-C	0.804	2E-10	(East Asian)	0.107	unit decrease	Affymetrix [at least 7091467] (imputed)	N
736	chr8	19852517	19852518	rs17489282	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p21.3	NR	rs17489282-C	0.75	6E-13	(Hispanic)	0.102	unit decrease	Affymetrix [at least 7091467] (imputed)	N
736	chr8	19852517	19852518	rs17489282	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p21.3	NR	rs17489282-C	0.731	2E-103	(EA)	0.091	unit decrease	Affymetrix [at least 7091467] (imputed)	N
736	chr8	19852585	19852586	rs4922117	31910446	Oh SW	2020-01-07	PLoS One	Genome-wide association study of metabolic syndrome in Korean populations.	Low HDL-cholesterol levels	7,423 Korean ancestry cases and controls	NA	8p21.3	NR	rs4922117-?	NR	3E-7		1.3513513	[1.2-1.52]	Affymetrix [at least 584061] (imputed)	N
736	chr8	19852585	19852586	rs4922117	31910446	Oh SW	2020-01-07	PLoS One	Genome-wide association study of metabolic syndrome in Korean populations.	Hypertriglyceridemia	7,423 Korean ancestry cases and controls	NA	8p21.3	NR	rs4922117-?	NR	3E-7		1.345895	[1.2-1.51]	Affymetrix [at least 584061] (imputed)	N
736	chr8	19853388	19853389	rs1992442	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphoglycerides levels	115,006 European ancestry individuals	NA	8p21.3		rs1992442-A	0.734966	3E-8		0.0246068	[0.016-0.033] unit decrease	NR [11722792] (imputed)	N
736	chr8	19853388	19853389	rs1992442	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphatidylcholine levels	115,006 European ancestry individuals	NA	8p21.3		rs1992442-A	0.734966	3E-12		0.030627	[0.022-0.039] unit decrease	NR [11722792] (imputed)	N
736	chr8	19853388	19853389	rs1992442	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total fatty acids	4,348 individuals	NA	8p21.3		rs1992442-C	0.278865919	9E-10		0.149165	[0.1-0.2] mmol/l decrease	Illumina [7701709] (imputed)	N
736	chr8	19853388	19853389	rs1992442	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting very small VLDL particle concentration	4,734 individuals	NA	8p21.3		rs1992442-C	0.27707967	1E-12		0.165034	[0.12-0.21] mmol/l decrease	Illumina [7701709] (imputed)	N
736	chr8	19853388	19853389	rs1992442	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total lipids in very small VLDL	4,734 individuals	NA	8p21.3		rs1992442-C	0.27707967	2E-11		0.15536	[0.11-0.2] mmol/l decrease	Illumina [7701709] (imputed)	N
736	chr8	19853388	19853389	rs1992442	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total fatty acids	4,734 individuals	NA	8p21.3		rs1992442-C	0.277367953	2E-12		0.162938	[0.12-0.21] mmol/l decrease	Illumina [7701709] (imputed)	N
736	chr8	19853388	19853389	rs1992442	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total cholesterol in small VLDL	4,734 individuals	NA	8p21.3		rs1992442-C	0.27684853	3E-18		0.201744	[0.16-0.25] mmol/l decrease	Illumina [7701709] (imputed)	N
736	chr8	19853388	19853389	rs1992442	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting cholesterol esters in small VLDL	4,734 individuals	NA	8p21.3		rs1992442-C	0.27684853	1E-15		0.185879	[0.14-0.23] mmol/l decrease	Illumina [7701709] (imputed)	N
736	chr8	19853388	19853389	rs1992442	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting apolipoprotein B	4,734 individuals	NA	8p21.3		rs1992442-C	0.27706823	5E-14		0.174539	[0.13-0.22] mmol/l decrease	Illumina [7701709] (imputed)	N
736	chr8	19854499	19854500	rs4425772	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	8p21.3		rs4425772-T	0.265173	1E-35		0.03225801	[0.027-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
736	chr8	19855005	19855006	rs17411113	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small LDL	115,082 European ancestry individuals	NA	8p21.3		rs17411113-C	0.90012	9E-15		0.0531641	[0.04-0.067] unit decrease	NR [11722792] (imputed)	N
736	chr8	19855005	19855006	rs17411113	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	8p21.3		rs17411113-C	0.90012	6E-9		0.0399911	[0.027-0.053] unit decrease	NR [11722792] (imputed)	N
736	chr8	19855005	19855006	rs17411113	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in LDL	115,082 European ancestry individuals	NA	8p21.3		rs17411113-C	0.90012	6E-19		0.0604958	[0.047-0.074] unit decrease	NR [11722792] (imputed)	N
736	chr8	19855005	19855006	rs17411113	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs17411113-T	NR	8E-22		0.0975	[0.078-0.117] unit decrease	Illumina [6720657] (imputed)	N
736	chr8	19855005	19855006	rs17411113	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs17411113-T	NR	8E-22		0.0485	[0.039-0.058] unit increase	Illumina [6720657] (imputed)	N
736	chr8	19855005	19855006	rs17411113	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs17411113-A	NR	8E-22		0.0913	[0.073-0.11] unit increase	Illumina [6720657] (imputed)	N
736	chr8	19855005	19855006	rs17411113	33730874	Said MA	2021-03-18	Arterioscler Thromb Vasc Biol	Genome-Wide Association Study and Identification of a Protective Missense Variant on Lipoprotein(a) Concentration: Protective Missense Variant on Lipoprotein(a) Concentration.	Lipoprotein (a) levels	348,591 European ancestry individuals, 6,000 African ancestry individuals, 9,116 Asian ancestry individuals, 7,505 individuals		8p21.3	LPL	rs17411113-C	NR	5E-19		0.02273	[0.016-0.029] nmol/l decrease	NR [19000000] (imputed)	N
736	chr8	19855271	19855272	rs17411126	31910446	Oh SW	2020-01-07	PLoS One	Genome-wide association study of metabolic syndrome in Korean populations.	Low HDL-cholesterol levels	7,423 Korean ancestry cases and controls	NA	8p21.3	NR	rs17411126-?	NR	4E-7		1.347709	[1.2-1.51]	Affymetrix [at least 584061] (imputed)	N
736	chr8	19855271	19855272	rs17411126	31910446	Oh SW	2020-01-07	PLoS One	Genome-wide association study of metabolic syndrome in Korean populations.	Hypertriglyceridemia	7,423 Korean ancestry cases and controls	NA	8p21.3	NR	rs17411126-?	NR	2E-7		1.347709	[1.2-1.51]	Affymetrix [at least 584061] (imputed)	N
736	chr8	19855330	19855331	rs17411133	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small HDL particles	115,082 European ancestry individuals	NA	8p21.3		rs17411133-T	0.734894	5E-16		0.0380714	[0.029-0.047] unit decrease	NR [11722792] (imputed)	N
736	chr8	19855343	19855344	rs17489373	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_53:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs17489373-A	NR	3E-10		0.102213	[0.07-0.134] unit decrease	Affymetrix [87696910] (imputed)	N
736	chr8	19855343	19855344	rs17489373	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_52:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs17489373-A	NR	2E-11		0.109775	[0.078-0.142] unit decrease	Affymetrix [87696910] (imputed)	N
736	chr8	19855343	19855344	rs17489373	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_38:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs17489373-A	NR	1E-11		0.0879556	[0.062-0.113] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19855343	19855344	rs17489373	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:1_[M+H]1+/Phosphatidylethanolamine_37:1_[M+H]1+/Phosphatidate_39:2_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs17489373-A	NR	8E-12		0.0891334	[0.064-0.115] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19855343	19855344	rs17489373	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:0_[M+H]1+/Phosphatidylethanolamine_37:0_[M+H]1+/Phosphatidate_39:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs17489373-A	NR	1E-12		0.0926013	[0.067-0.118] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19855343	19855344	rs17489373	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_32:1_[M+H]1+/Phosphatidylcholine-P_32:0_[M+H]1+/Phosphatidylethanolamine-O_35:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs17489373-A	NR	2E-10		0.0844963	[0.059-0.11] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19855343	19855344	rs17489373	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_36:3_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs17489373-A	NR	2E-13		0.087278	[0.064-0.11] unit decrease	Affymetrix [87696910] (imputed)	N
736	chr8	19855343	19855344	rs17489373	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_36:2_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs17489373-A	NR	3E-11		0.0778474	[0.055-0.101] unit decrease	Affymetrix [87696910] (imputed)	N
736	chr8	19855343	19855344	rs17489373	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_34:2_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs17489373-A	NR	5E-11		0.0765679	[0.054-0.099] unit decrease	Affymetrix [87696910] (imputed)	N
736	chr8	19855343	19855344	rs17489373	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	8p21.3	NR	rs17489373-A	NR	3E-503		0.1288	[0.12-0.13] unit decrease	Affymetrix [9000000] (imputed)	N
736	chr8	19855343	19855344	rs17489373	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	8p21.3	NR	rs17489373-A	NR	1E-23		0.027	[0.022-0.032] unit decrease	Affymetrix [9000000] (imputed)	N
736	chr8	19855343	19855344	rs17489373	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	8p21.3	NR	rs17489373-A	NR	6E-478		0.1312	[0.13-0.14] unit increase	Affymetrix [9000000] (imputed)	N
736	chr8	19855343	19855344	rs17489373	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	8p21.3	NR	rs17489373-A	NR	5E-61		0.0444	[0.039-0.05] unit decrease	Affymetrix [9000000] (imputed)	N
736	chr8	19855343	19855344	rs17489373	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	8p21.3	NR	rs17489373-A	NR	2E-280		0.1007	[0.095-0.106] unit increase	Affymetrix [9000000] (imputed)	N
736	chr8	19855343	19855344	rs17489373	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	8p21.3		rs17489373-A	0.265088	4E-11		0.018867737	[0.013-0.024] unit increase	Affymetrix [93095623] (imputed)	N
736	chr8	19855599	19855600	rs17411168	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholines levels	115,006 European ancestry individuals	NA	8p21.3		rs17411168-T	0.734795	6E-14		0.0329874	[0.024-0.042] unit decrease	NR [11722792] (imputed)	N
736	chr8	19855599	19855600	rs17411168	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small HDL	115,082 European ancestry individuals	NA	8p21.3		rs17411168-T	0.734792	4E-10		0.0287452	[0.02-0.038] unit decrease	NR [11722792] (imputed)	N
736	chr8	19855844	19855850	rs140426714	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	8p21.3		rs140426714-G	0.253488	7E-11		0.017143235	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
736	chr8	19855844	19855850	rs140426714	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	8p21.3	intergenic	rs140426714-G	0.2543	7E-17		0.03489648	[0.027-0.043] unit decrease	Affymetrix [~ 2500000] (imputed)	N
736	chr8	19859538	19859539	rs2119690	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Creatinine levels	110,051 European ancestry individuals	NA	8p21.3		rs2119690-G	0.71146	8E-10		0.0240183	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
736	chr8	19859538	19859539	rs2119690	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	8p21.3		rs2119690-G	0.711551	4E-16		0.0372666	[0.028-0.046] unit decrease	NR [11722792] (imputed)	N
736	chr8	19859538	19859539	rs2119690	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small HDL	115,082 European ancestry individuals	NA	8p21.3		rs2119690-G	0.711551	7E-30		0.0517646	[0.043-0.061] unit decrease	NR [11722792] (imputed)	N
736	chr8	19859538	19859539	rs2119690	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls, 33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	8p21.3		rs2119690-A	NR	1E-20		0.0576	[0.045-0.07] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
736	chr8	19859538	19859539	rs2119690	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	8p21.3	NR	rs2119690-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
736	chr8	19859538	19859539	rs2119690	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	8p21.3		rs2119690-?	NR	3E-9				NR [~ 8900000] (imputed)	N
736	chr8	19859626	19859627	rs2165556	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Stable angina pectoris	17,894 European ancestry cases, 325,132 European ancestry controls, 18,833 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	8p21.3		rs2165556-T	NR	4E-11		0.0657	[0.046-0.085] unit decrease	Affymetrix, Illumina [20456336] (imputed)	N
736	chr8	19860459	19860460	rs79236614	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	8p21.3		rs79236614-C	0.900249	2E-76		0.126637	[0.11-0.14] unit decrease	NR [11722792] (imputed)	N
736	chr8	19860459	19860460	rs79236614	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	8p21.3		rs79236614-C	0.900249	1E-107		0.148054	[0.13-0.16] unit decrease	NR [11722792] (imputed)	N
736	chr8	19860459	19860460	rs79236614	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	8p21.3		rs79236614-C	0.900249	4E-122		0.158653	[0.15-0.17] unit decrease	NR [11722792] (imputed)	N
736	chr8	19860459	19860460	rs79236614	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(53:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs79236614-T	NR	4E-10		0.0917	[0.063-0.121] unit increase	Illumina [6720657] (imputed)	N
736	chr8	19860459	19860460	rs79236614	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs79236614-T	NR	4E-10		0.0522	[0.036-0.069] unit decrease	Illumina [6720657] (imputed)	N
736	chr8	19860459	19860460	rs79236614	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs79236614-G	NR	4E-10		0.0771	[0.053-0.101] unit decrease	Illumina [6720657] (imputed)	N
736	chr8	19860459	19860460	rs79236614	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs79236614-A	NR	4E-10		0.1505	[0.1-0.2] unit decrease	Illumina [6720657] (imputed)	N
736	chr8	19860459	19860460	rs79236614	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs79236614-C	NR	4E-10		0.0787	[0.054-0.103] unit decrease	Illumina [6720657] (imputed)	N
736	chr8	19860459	19860460	rs79236614	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:1)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs79236614-T	NR	4E-10		0.104	[0.071-0.137] unit decrease	Illumina [6720657] (imputed)	N
736	chr8	19860459	19860460	rs79236614	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	8p21.3	NR	rs79236614-?	NR	6E-26		0.07331961	[0.06-0.087] unit decrease	Illumina [31978265] (imputed)	N
736	chr8	19860459	19860460	rs79236614	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	8p21.3	NR	rs79236614-?	NR	3E-21		1.856684	[1.47-2.24] unit increase	Illumina [31978362] (imputed)	N
736	chr8	19860459	19860460	rs79236614	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p21.3	NR	rs79236614-C	NR	1E-194		0.183	unit increase	Affymetrix [at least 7091467] (imputed)	N
736	chr8	19860459	19860460	rs79236614	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p21.3	NR	rs79236614-C	0.916	2E-15	(Hispanic)	0.194	unit increase	Affymetrix [at least 7091467] (imputed)	N
736	chr8	19860459	19860460	rs79236614	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p21.3	NR	rs79236614-C	0.897	4E-162	(EA)	0.184	unit increase	Affymetrix [at least 7091467] (imputed)	N
736	chr8	19860459	19860460	rs79236614	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p21.3	NR	rs79236614-C	0.889	3E-17	(East Asian)	0.195	unit increase	Affymetrix [at least 7091467] (imputed)	N
736	chr8	19860459	19860460	rs79236614	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p21.3	NR	rs79236614-C	NR	8E-128		0.135	unit decrease	Affymetrix [at least 7091467] (imputed)	N
736	chr8	19860459	19860460	rs79236614	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p21.3	NR	rs79236614-C	0.916	5E-13	(Hispanic)	0.159	unit decrease	Affymetrix [at least 7091467] (imputed)	N
736	chr8	19860459	19860460	rs79236614	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p21.3	NR	rs79236614-C	0.897	2E-103	(EA)	0.133	unit decrease	Affymetrix [at least 7091467] (imputed)	N
736	chr8	19860459	19860460	rs79236614	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p21.3	NR	rs79236614-C	0.889	4E-13	(East Asian)	0.154	unit decrease	Affymetrix [at least 7091467] (imputed)	N
736	chr8	19860459	19860460	rs79236614	24886709	Ko A	2014-06-02	Nat Commun	Amerindian-specific regions under positive selection harbour new lipid variants in Latinos.	Triglycerides	1,678 Mexican ancestry high triglyceride cases, 1,645 Mexican ancestry low triglyceride controls	2,129 Mexican ancestry high triglyceride cases, 2,985 Mexican ancestry low triglyceride controls, 903 Mexican ancestry individuals from 73 dyslipidemic families	8p21.3	SLC18A1, LPL	rs79236614-?	NR	7E-9		1.89	[1.49-2.38]	Illumina [1661241] (imputed)	N
736	chr8	19861360	19861361	rs3844510	31589552	Lind L	2019-10-07	Metab Syndr Relat Disord	Genome-Wide Association Study of the Metabolic Syndrome in UK Biobank.	Metabolic syndrome	291,107 European ancestry individuals	NA	8p21.3	LPL	rs3844510-C	0.26399	1E-138		0.191134	[0.18-0.21] unit decrease	Affymetrix [9463307] (imputed)	N
736	chr8	19863023	19863024	rs1441764	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	8p21.3		rs1441764-?	NR	3E-8		0.00544373	[0.0035-0.0074] unit increase	NR [NR]	N
736	chr8	19863357	19863358	rs6586884	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs6586884-A	NR	1E-10		0.1062	[0.074-0.139] unit increase	Illumina [6720657] (imputed)	N
736	chr8	19863357	19863358	rs6586884	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs6586884-G	NR	1E-10		0.0536	[0.037-0.07] unit decrease	Illumina [6720657] (imputed)	N
736	chr8	19863357	19863358	rs6586884	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs6586884-T	NR	1E-10		0.0367	[0.026-0.048] unit decrease	Illumina [6720657] (imputed)	N
736	chr8	19863357	19863358	rs6586884	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs6586884-G	NR	1E-10		0.0512	[0.036-0.067] unit decrease	Illumina [6720657] (imputed)	N
736	chr8	19863357	19863358	rs6586884	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:1)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs6586884-A	NR	1E-10		0.0602	[0.042-0.079] unit increase	Illumina [6720657] (imputed)	N
736	chr8	19863470	19863471	rs6999813	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs6999813-T	NR	2E-10		0.1056	[0.073-0.138] unit decrease	Illumina [6720657] (imputed)	N
736	chr8	19863470	19863471	rs6999813	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs6999813-T	NR	2E-10		0.079	[0.055-0.103] unit decrease	Illumina [6720657] (imputed)	N
736	chr8	19863470	19863471	rs6999813	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs6999813-T	NR	2E-10		0.0381	[0.026-0.05] unit increase	Illumina [6720657] (imputed)	N
736	chr8	19863470	19863471	rs6999813	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:1)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs6999813-G	NR	2E-10		0.0777	[0.054-0.102] unit decrease	Illumina [6720657] (imputed)	N
736	chr8	19863802	19863803	rs186868868	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	8p21.3	NR	rs186868868-A	NR	3E-46		0.1365	[0.12-0.16] unit increase	Affymetrix [9000000] (imputed)	N
736	chr8	19863802	19863803	rs186868868	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	8p21.3	NR	rs186868868-A	NR	2E-53		0.1534	[0.13-0.17] unit decrease	Affymetrix [9000000] (imputed)	N
736	chr8	19863802	19863803	rs186868868	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	8p21.3	NR	rs186868868-A	NR	4E-28		0.11	[0.09-0.13] unit decrease	Affymetrix [9000000] (imputed)	N
736	chr8	19864487	19864488	rs76933767	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	8p21.3		rs76933767-T	0.985025	1E-11		0.110629	[0.079-0.143] unit increase	NR [11722792] (imputed)	N
736	chr8	19864487	19864488	rs76933767	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	8p21.3		rs76933767-T	0.985025	2E-14		0.125303	[0.093-0.157] unit increase	NR [11722792] (imputed)	N
736	chr8	19864487	19864488	rs76933767	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	8p21.3		rs76933767-T	0.985018	7E-17		0.134856	[0.1-0.17] unit decrease	NR [11722792] (imputed)	N
736	chr8	19864487	19864488	rs76933767	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	8p21.3		rs76933767-T	0.985018	5E-10		0.103373	[0.071-0.136] unit increase	NR [11722792] (imputed)	N
736	chr8	19864487	19864488	rs76933767	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	8p21.3		rs76933767-T	0.985018	5E-11		0.110197	[0.077-0.143] unit increase	NR [11722792] (imputed)	N
736	chr8	19864555	19864556	rs1441763	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	20,917 European ancestry cases, 440,906 European ancestry controls, 14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	8p21.3		rs1441763-C	NR	3E-11		0.0689	[0.049-0.089] unit decrease	Affymetrix, Illumina [25841367] (imputed)	N
736	chr8	19865174	19865175	rs2083637	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_53:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs2083637-G	NR	2E-10		0.102752	[0.071-0.135] unit decrease	Affymetrix [87696910] (imputed)	N
736	chr8	19865174	19865175	rs2083637	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_52:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs2083637-G	NR	2E-11		0.109439	[0.078-0.141] unit decrease	Affymetrix [87696910] (imputed)	N
736	chr8	19865174	19865175	rs2083637	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_38:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs2083637-G	NR	1E-11		0.0878694	[0.062-0.113] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19865174	19865175	rs2083637	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:1_[M+H]1+/Phosphatidylethanolamine_37:1_[M+H]1+/Phosphatidate_39:2_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs2083637-G	NR	6E-12		0.0896418	[0.064-0.115] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19865174	19865175	rs2083637	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:0_[M+H]1+/Phosphatidylethanolamine_37:0_[M+H]1+/Phosphatidate_39:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs2083637-G	NR	7E-13		0.0931012	[0.068-0.119] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19865174	19865175	rs2083637	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_34:1_[M+H]1+/Phosphatidylcholine-P_34:0_[M+H]1+/Phosphatidylethanolamine-O_37:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs2083637-G	NR	2E-10		0.0810977	[0.056-0.106] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19865174	19865175	rs2083637	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_32:1_[M+H]1+/Phosphatidylcholine-P_32:0_[M+H]1+/Phosphatidylethanolamine-O_35:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs2083637-G	NR	1E-10		0.0852374	[0.059-0.111] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19865174	19865175	rs2083637	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_36:3_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs2083637-G	NR	1E-13		0.0873984	[0.064-0.111] unit decrease	Affymetrix [87696910] (imputed)	N
736	chr8	19865174	19865175	rs2083637	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_36:2_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs2083637-G	NR	2E-11		0.0785124	[0.056-0.101] unit decrease	Affymetrix [87696910] (imputed)	N
736	chr8	19865174	19865175	rs2083637	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_34:2_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs2083637-G	NR	3E-11		0.0771579	[0.054-0.1] unit decrease	Affymetrix [87696910] (imputed)	N
736	chr8	19865174	19865175	rs2083637	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	8p21.3	NR	rs2083637-?	NR	1E-25		0.04962666	[0.04-0.059] unit decrease	Illumina [31978265] (imputed)	N
736	chr8	19865174	19865175	rs2083637	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	8p21.3	NR	rs2083637-?	NR	9E-24		1.324449	[1.07-1.58] unit increase	Illumina [31978362] (imputed)	N
736	chr8	19865174	19865175	rs2083637	20694148	Zabaneh D	2010-08-04	PLoS One	A genome-wide association study of the metabolic syndrome in Indian Asian men.	Metabolic syndrome	2,554 Indian Asian ancestry individuals	2,240 Indian Asian ancestry individuals	8p21.3	LPL	rs2083637-G	0.24	2E-10	(HDL)	0.04	[0.02-0.05] mmol/l increase	Illumina [308011]	N
736	chr8	19865174	19865175	rs2083637	19060911	Aulchenko YS	2008-12-07	Nat Genet	Loci influencing lipid levels and coronary heart disease risk in 16 European population cohorts.	HDL cholesterol	20,697 European ancestry individuals, 715 Orcadian individuals	NA	8p21.3	LPL	rs2083637-G	0.26	6E-18		0.11	[NR] s.d. increase	Affymetrix, Illumina [up to 600000]	N
736	chr8	19865174	19865175	rs2083637	18454146	Chambers JC	2008-05-04	Nat Genet	Common genetic variation near MC4R is associated with waist circumference and insulin resistance.	Waist circumference and related phenotypes	2,684 Indian Asian ancestry male individuals	7,394 Indian Asian ancestry individuals, 4,561 European ancestry individuals	8p21.3	LPL	rs2083637-?	NR	5E-6	(HDL cholesterol)			Illumina [308067]	N
736	chr8	19865262	19865263	rs2083636	28714975	Nelson CP	2017-07-17	Nat Genet	Association analyses based on false discovery rate implicate new loci for coronary artery disease.	Coronary artery disease (myocardial infarction, percutaneous transluminal coronary angioplasty, coronary artery bypass grafting, angina or chromic ischemic heart disease)	18,467 European and unknown ancestry cases, 45,264 European and unknown ancestry controls	57,347 European and unknown ancestry cases, 219,521 European and unknown ancestry controls	8p21.3	LPL	rs2083636-T	0.742	6E-8		1.05	[1.03-1.07]	Affymetrix [9149595] (imputed)	N
736	chr8	19865454	19865455	rs77237194	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs77237194-G	NR	4E-10		0.0638	[0.044-0.084] unit increase	Illumina [6720657] (imputed)	N
736	chr8	19865454	19865455	rs77237194	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs77237194-T	NR	4E-10		0.0352	[0.024-0.046] unit increase	Illumina [6720657] (imputed)	N
736	chr8	19865454	19865455	rs77237194	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs77237194-A	NR	4E-10		0.0733	[0.05-0.096] unit increase	Illumina [6720657] (imputed)	N
736	chr8	19865454	19865455	rs77237194	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:1)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs77237194-A	NR	4E-10		0.0464	[0.032-0.061] unit increase	Illumina [6720657] (imputed)	N
736	chr8	19865454	19865455	rs77237194	33500527	Park JM	2021-01-26	Sci Rep	Understanding the genetic architecture of the metabolically unhealthy normal weight and metabolically healthy obese phenotypes in a Korean population.	Metabolically unhealthy in normal weight	10,358 Korean ancestry cases, 23,466 Korean ancestry controls	NA	8p21.3	LPL	rs77237194-T	0.12	3E-12		0.83	[0.78-0.87]	Affymetrix [7975321]	N
736	chr8	19865562	19865563	rs1441759	27286809	Ligthart S	2016-06-10	BMC Genomics	Bivariate genome-wide association study identifies novel pleiotropic loci for lipids and inflammation.	C-reactive protein levels or triglyceride levels (pleiotropy)	65,000 individuals (C-reactive protein), 96,598 individuals (triglycerides)	NA	8p21.3	LPL	rs1441759-C	NR	2E-9				NR [25015711] (imputed)	N
736	chr8	19865842	19865843	rs894210	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	Triglyceride levels	up to 23,508 African ancestry individuals, 4,649 Asian ancestry individuals, up to 77,047 European ancestry individuals, 6,705 Hispanic individuals	NA	8p21.3		rs894210-A	0.5765	9E-25		0.0243	[0.02-0.029] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
736	chr8	19865842	19865843	rs894210	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	HDL cholesterol levels	up to 23,761 African ancestry individuals, 13,171 Asian ancestry individuals, up to 90,272 European ancestry individuals, 6,620 Hispanic individuals	NA	8p21.3		rs894210-A	0.5531	2E-37		0.0139	[0.012-0.016] unit increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
736	chr8	19865842	19865843	rs894210	30718733	Moon S	2019-02-04	Sci Rep	The Korea Biobank Array: Design and Identification of Coding Variants Associated with Blood Biochemical Traits.	High density lipoprotein cholesterol levels	6,949 Korean ancestry individuals	6,000 Korean ancestry individuals	8p21.3	LPL	rs894210-A	0.331	4E-13		0.0284	[0.021-0.036] unit increase	Affymetrix [at least 805769] (imputed)	N
736	chr8	19866273	19866274	rs765547	31910446	Oh SW	2020-01-07	PLoS One	Genome-wide association study of metabolic syndrome in Korean populations.	Low HDL-cholesterol levels	7,423 Korean ancestry cases and controls	NA		NR	rs765547-?	NR	5E-7		1.3422818	[1.2-1.51]	Affymetrix [at least 584061] (imputed)	N
736	chr8	19866273	19866274	rs765547	31910446	Oh SW	2020-01-07	PLoS One	Genome-wide association study of metabolic syndrome in Korean populations.	Hypertriglyceridemia	7,423 Korean ancestry cases and controls	NA		NR	rs765547-?	NR	2E-7		1.3513513	[1.21-1.51]	Affymetrix [at least 584061] (imputed)	N
736	chr8	19866273	19866274	rs765547	27790247	He L	2016-11-03	Front Genet	Pleiotropic Meta-Analyses of Longitudinal Studies Discover Novel Genetic Variants Associated with Age-Related Diseases.	Age-related diseases, mortality and associated endophenotypes	9,618 European ancestry individuals	19,796 European ancestry individuals		NR	rs765547-?	NR	2E-44				Affymetrix [NR]	N
736	chr8	19866273	19866274	rs765547	27790247	He L	2016-11-03	Front Genet	Pleiotropic Meta-Analyses of Longitudinal Studies Discover Novel Genetic Variants Associated with Age-Related Diseases.	Age-related disease endophenotypes	9,618 European ancestry individuals	19,796 European ancestry individuals		NR	rs765547-?	NR	3E-51				Affymetrix [NR]	N
736	chr8	19867219	19867220	rs9644637	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	8p21.3	LPL	rs9644637-?	NR	2E-10	(L_VLDL_TG)	0.0584369	NR unit decrease	Illumina [609262]	N
736	chr8	19867219	19867220	rs9644637	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	8p21.3	LPL	rs9644637-?	NR	5E-8	(L_VLDL_TG)	0.06830435	NR unit decrease	Illumina [609262]	N
736	chr8	19867444	19867445	rs11986942	31910446	Oh SW	2020-01-07	PLoS One	Genome-wide association study of metabolic syndrome in Korean populations.	Low HDL-cholesterol levels	7,423 Korean ancestry cases and controls	NA	8p21.3	NR	rs11986942-?	NR	5E-7		1.344086	[1.2-1.51]	Affymetrix [at least 584061] (imputed)	N
736	chr8	19867444	19867445	rs11986942	31910446	Oh SW	2020-01-07	PLoS One	Genome-wide association study of metabolic syndrome in Korean populations.	Hypertriglyceridemia	7,423 Korean ancestry cases and controls	NA	8p21.3	NR	rs11986942-?	NR	2E-7		1.3513513	[1.21-1.51]	Affymetrix [at least 584061] (imputed)	N
736	chr8	19868101	19868102	rs1837843	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Angina pectoris	30,025 European ancestry cases, 440,906 European ancestry controls, 14,007 East Asian ancestry cases, 145,158 East Asian ancestry controls	NA	8p21.3		rs1837843-T	NR	4E-12		0.0641	[0.046-0.082] unit decrease	Affymetrix, Illumina [25842036] (imputed)	N
736	chr8	19868289	19868290	rs1837842	31910446	Oh SW	2020-01-07	PLoS One	Genome-wide association study of metabolic syndrome in Korean populations.	Low HDL-cholesterol levels	7,423 Korean ancestry cases and controls	NA	8p21.3	NR	rs1837842-?	NR	6E-7		1.3422818	[1.2-1.51]	Affymetrix [at least 584061] (imputed)	N
736	chr8	19868289	19868290	rs1837842	31910446	Oh SW	2020-01-07	PLoS One	Genome-wide association study of metabolic syndrome in Korean populations.	Hypertriglyceridemia	7,423 Korean ancestry cases and controls	NA	8p21.3	NR	rs1837842-?	NR	2E-7		1.3495277	[1.21-1.51]	Affymetrix [at least 584061] (imputed)	N
736	chr8	19868385	19868386	rs1441756	21386085	Kraja AT	2011-03-08	Diabetes	A bivariate genome-wide approach to metabolic syndrome: STAMPEED consortium.	Metabolic syndrome (bivariate traits)	22,161 European ancestry individuals	NA	8p21.3	LPL	rs1441756-G	NR	3E-8	(BP-HDLC)	0.18	[0.12-0.24] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
736	chr8	19869675	19869676	rs1919484	31910446	Oh SW	2020-01-07	PLoS One	Genome-wide association study of metabolic syndrome in Korean populations.	Low HDL-cholesterol levels	7,423 Korean ancestry cases and controls	NA		NR	rs1919484-?	NR	5E-7		1.3422818	[1.2-1.51]	Affymetrix [at least 584061] (imputed)	N
736	chr8	19869675	19869676	rs1919484	31910446	Oh SW	2020-01-07	PLoS One	Genome-wide association study of metabolic syndrome in Korean populations.	Hypertriglyceridemia	7,423 Korean ancestry cases and controls	NA		NR	rs1919484-?	NR	2E-7		1.3513513	[1.21-1.51]	Affymetrix [at least 584061] (imputed)	N
736	chr8	19870270	19870271	rs35237252	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol levels	115,082 European ancestry individuals	NA	8p21.3		rs35237252-C	0.749402	4E-12		0.0322653	[0.023-0.041] unit decrease	NR [11722792] (imputed)	N
736	chr8	19870270	19870271	rs35237252	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (salicylic acid and derivatives)	61,583 European ancestry cases, 50,427 European ancestry controls, 41,461 East Asian ancestry cases, 137,265 East Asian ancestry controls	NA	8p21.3		rs35237252-A	NR	2E-8		0.0396	[0.026-0.054] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
736	chr8	19870270	19870271	rs35237252	30104761	Zhou W	2018-08-13	Nat Genet	Efficiently controlling for case-control imbalance and sample relatedness in large-scale genetic association studies.	Coronary artery disease	31,355 European ancestry cases, 377,103 European ancestry controls	NA	8p21.3	LPL, SLC18A1	rs35237252-A	0.251	5E-8				Affymetrix [28000000] (imputed)	N
736	chr8	19870270	19870271	rs35237252	28548082	Southam L	2017-05-26	Nat Commun	Whole genome sequencing and imputation in isolated populations identify genetic associations with medically-relevant complex traits.	High density lipoprotein cholesterol levels	up to 1,476 Mylopotamos (founder/genetic isolate) individuals, up to 1,737 Pomak (founder/genetic isolate) individuals	NA	8p21.3	LPL	rs35237252-A	0.277	4E-10		0.183	[0.13-0.24] unit increase	Illumina [at least 13541454] (imputed)	N
736	chr8	19871079	19871080	rs75609851	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	8p21.3	LPL	rs75609851-G	0.98952	5E-87		0.198909	[0.18-0.22] unit increase	Affymetrix [NR] (imputed)	N
736	chr8	19871079	19871080	rs75609851	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	8p21.3	LPL	rs75609851-G	0.989546	2E-69		0.170013	[0.15-0.19] unit decrease	Affymetrix [NR] (imputed)	N
736	chr8	19871112	19871113	rs78810414	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs78810414-T	NR	4E-10		0.0675	[0.046-0.089] unit decrease	Illumina [6720657] (imputed)	N
736	chr8	19871112	19871113	rs78810414	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs78810414-A	NR	4E-10		0.036	[0.025-0.047] unit decrease	Illumina [6720657] (imputed)	N
736	chr8	19871319	19871320	rs1372343	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	8p21.3		rs1372343-?	NR	2E-9				NR [~ 8900000] (imputed)	N
736	chr8	19871539	19871540	rs7461115	31910446	Oh SW	2020-01-07	PLoS One	Genome-wide association study of metabolic syndrome in Korean populations.	Low HDL-cholesterol levels	7,423 Korean ancestry cases and controls	NA	8p21.3	NR	rs7461115-?	NR	8E-7		1.3422818	[1.19-1.51]	Affymetrix [at least 584061] (imputed)	N
736	chr8	19871539	19871540	rs7461115	31910446	Oh SW	2020-01-07	PLoS One	Genome-wide association study of metabolic syndrome in Korean populations.	Hypertriglyceridemia	7,423 Korean ancestry cases and controls	NA	8p21.3	NR	rs7461115-?	NR	6E-7		1.3351135	[1.19-1.5]	Affymetrix [at least 584061] (imputed)	N
736	chr8	19872338	19872339	rs80005209	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	8p21.3	LPL	rs80005209-T	0.970385	5E-144		0.144058	[0.13-0.16] unit increase	Affymetrix [NR] (imputed)	N
736	chr8	19873501	19873502	rs7000494	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	8p21.3	LPL	rs7000494-G	0.969958	4E-120		0.136371	[0.12-0.15] unit decrease	Affymetrix [NR] (imputed)	N
736	chr8	19876233	19876234	rs28675909	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs28675909-G	NR	2E-12		0.053	[0.038-0.068] unit increase	Illumina [6720657] (imputed)	N
736	chr8	19876263	19876264	rs79198716	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs79198716-C	NR	4E-10		0.1034	[0.071-0.136] unit decrease	Illumina [6720657] (imputed)	N
736	chr8	19876745	19876746	rs7016880	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_38:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs7016880-C	NR	4E-13		0.139895	[0.1-0.18] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19876745	19876746	rs7016880	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_36:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs7016880-C	NR	7E-13		0.134826	[0.098-0.172] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19876745	19876746	rs7016880	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_36:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs7016880-C	NR	6E-14		0.146057	[0.11-0.18] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19876745	19876746	rs7016880	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_36:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs7016880-C	NR	2E-14		0.144848	[0.11-0.18] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19876745	19876746	rs7016880	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_34:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs7016880-C	NR	6E-11		0.118816	[0.083-0.154] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19876745	19876746	rs7016880	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_34:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs7016880-C	NR	9E-13		0.140975	[0.1-0.18] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19876745	19876746	rs7016880	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_34:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs7016880-C	NR	2E-12		0.134999	[0.097-0.173] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19876745	19876746	rs7016880	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_32:1_[M+H]1+/Phosphatidylcholine-P_32:0_[M+H]1+/Phosphatidylethanolamine-O_35:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs7016880-C	NR	3E-11		0.129875	[0.092-0.168] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19876745	19876746	rs7016880	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_44:7_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs7016880-C	NR	1E-12		0.135661	[0.098-0.173] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19876745	19876746	rs7016880	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_36:3_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs7016880-C	NR	6E-11		0.114703	[0.08-0.149] unit decrease	Affymetrix [87696910] (imputed)	N
736	chr8	19876745	19876746	rs7016880	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_36:2_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs7016880-C	NR	8E-11		0.112327	[0.078-0.146] unit decrease	Affymetrix [87696910] (imputed)	N
736	chr8	19876745	19876746	rs7016880	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_34:2_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs7016880-C	NR	4E-11		0.114154	[0.08-0.148] unit decrease	Affymetrix [87696910] (imputed)	N
736	chr8	19876745	19876746	rs7016880	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_34:1_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs7016880-C	NR	2E-10		0.112419	[0.078-0.147] unit decrease	Affymetrix [87696910] (imputed)	N
736	chr8	19876745	19876746	rs7016880	32902719	Hebbar P	2020-09-09	Hum Genet	Genome-wide landscape establishes novel association signals for metabolic traits in the Arab population.	Low density lipoprotein cholesterol levels	2,732 Kuwaiti ancestry individuals	NA	8p21.3	LPL - LOC105379311	rs7016880-?	NR	5E-6		4.549	NR unit increase	Illumina [up to 1520000] (imputed)	N
736	chr8	19876745	19876746	rs7016880	20657596	Johansen CT	2010-07-25	Nat Genet	Excess of rare variants in genes identified by genome-wide association study of hypertriglyceridemia.	Hypertriglyceridemia	463 European ancestry cases, 1,197 European ancestry controls	NA	8p21.3	LPL	rs7016880-?	0.90	2E-7		3.13	[2.04-4.76]	Affymetrix [~ 2100000] (imputed)	N
736	chr8	19877460	19877461	rs77219697	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs77219697-C	NR	4E-10		0.053	[0.036-0.07] unit increase	Illumina [6720657] (imputed)	N
736	chr8	19878355	19878356	rs7013777	31910446	Oh SW	2020-01-07	PLoS One	Genome-wide association study of metabolic syndrome in Korean populations.	Low HDL-cholesterol levels	7,423 Korean ancestry cases and controls	NA	8p21.3	NR	rs7013777-?	NR	2E-6		1.3210039	[1.18-1.48]	Affymetrix [at least 584061] (imputed)	N
736	chr8	19878355	19878356	rs7013777	31910446	Oh SW	2020-01-07	PLoS One	Genome-wide association study of metabolic syndrome in Korean populations.	Hypertriglyceridemia	7,423 Korean ancestry cases and controls	NA	8p21.3	NR	rs7013777-?	NR	4E-7		1.3422818	[1.2-1.5]	Affymetrix [at least 584061] (imputed)	N
736	chr8	19878703	19878704	rs112994260	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial phospholipid levels in chylomicrons and extremely large VLDL	4,348 individuals	NA	8p21.3		rs112994260-A	0.107659679	7E-14		0.268642	[0.2-0.34] mmol/l decrease	Illumina [7701709] (imputed)	N
736	chr8	19879808	19879809	rs75082673	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs75082673-C	NR	3E-10		0.1041	[0.072-0.137] unit decrease	Illumina [6720657] (imputed)	N
736	chr8	19880329	19880330	rs11989309	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs11989309-T	NR	3E-27		0.0909	[0.074-0.107] unit increase	Illumina [6720657] (imputed)	N
736	chr8	19880725	19880726	rs75675187	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs75675187-T	NR	3E-10		0.0444	[0.03-0.058] unit decrease	Illumina [6720657] (imputed)	N
736	chr8	19881057	19881058	rs78404258	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs78404258-A	NR	4E-10		0.1019	[0.07-0.134] unit decrease	Illumina [6720657] (imputed)	N
736	chr8	19881800	19881801	rs60223219	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	8p21.3		rs60223219-A	0.900828	6E-14		0.0516845	[0.038-0.065] unit decrease	NR [11722792] (imputed)	N
736	chr8	19881800	19881801	rs60223219	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs60223219-C	NR	4E-11		0.0608	[0.043-0.079] unit increase	Illumina [6720657] (imputed)	N
736	chr8	19882052	19882052	rs67177715	34592243	Nusinovici S	2021-09-27	Ophthalmology	High-density lipoprotein 3 cholesterol and primary open-angle glaucoma: metabolomics and mendelian randomization analyses.	High-density lipoprotein 3 cholesterol levels	2,308 Chinese ancestry individuals, 2,528 Indian ancestry individuals, 2,521 Malays ancestry individuals, 10,984 Finnish ancestry individuals	NA	8p21.3		rs67177715-A	NR	2E-6		0.079	unit decrease	Illumina [NR] (imputed)	N
736	chr8	19882949	19882950	rs7816447	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Linoleic acid levels	115,006 European ancestry individuals	NA	8p21.3		rs7816447-T	0.899153	3E-13		0.0489828	[0.036-0.062] unit increase	NR [11722792] (imputed)	N
736	chr8	19883923	19883924	rs73208819	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	8p21.3	NR	rs73208819-C	NR	2E-25		0.0451	[0.037-0.054] unit increase	Affymetrix [9000000] (imputed)	N
736	chr8	19883923	19883924	rs73208819	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	8p21.3	NR	rs73208819-C	NR	5E-29		0.0506	[0.042-0.059] unit decrease	Affymetrix [9000000] (imputed)	N
736	chr8	19883923	19883924	rs73208819	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	8p21.3	NR	rs73208819-C	NR	5E-20		0.0416	[0.033-0.05] unit decrease	Affymetrix [9000000] (imputed)	N
736	chr8	19884256	19884257	rs114650503	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs114650503-C	NR	8E-30		0.1096	[0.091-0.129] unit decrease	Illumina [6720657] (imputed)	N
736	chr8	19884256	19884257	rs114650503	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs114650503-T	NR	8E-30		0.1096	[0.091-0.129] unit decrease	Illumina [6720657] (imputed)	N
736	chr8	19884946	19884947	rs9644639	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs9644639-C	NR	7E-10		0.031	[0.021-0.041] unit increase	Illumina [6720657] (imputed)	N
736	chr8	19884946	19884947	rs9644639	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	8p21.3		rs9644639-G	NR	7E-10		0.0678	[0.046-0.089] unit increase	Illumina [6720657] (imputed)	N
736	chr8	19885512	19885513	rs75835816	27005778	Kettunen J	2016-03-23	Nat Commun	Genome-wide study for circulating metabolites identifies 62 loci and reveals novel systemic effects of LPA.	Metabolite levels (lipoprotein measures)	2,118 Erasmus Rucphen (founder/genetic isolate), 22,807 European ancestry individuals	NA	8p21.3	NR	rs75835816-?	NR	4E-14	(Total cholesterol in HDL, conditioned)	0.279236	[0.21-0.35] uni decrease	Affymetrix, Illumina, Perlegen [12133295] (imputed)	N
736	chr8	19885725	19885726	rs11984636	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Triglyceride levels	28,183 East Asian ancestry individuals, 177,861 European ancestry individuals	10,857 Chinese ancestry individuals	8p21.3	MET	rs11984636-T	0.89	8E-18	(Asian initial, BMI unadjusted)	0.165	[0.13-0.2] unit increase	Affymetrix, Illumina [up to 1900000] (imputed)	N
736	chr8	19885725	19885726	rs11984636	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Triglyceride levels	18,421 East Asian ancestry individuals	38,060 East Asian ancestry individuals	8p21.3	MET	rs11984636-T	0.89	3E-18	(BMI unadjusted)	0.165	[0.13-0.2] unit increase	Affymetrix, Illumina [~ 2400000] (imputed)	N
736	chr8	19885725	19885726	rs11984636	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	HDL cholesterol levels	34,930 East Asian ancestry individuals, 187,167 European ancestry individuals	8,741 Chinese ancestry individuals	8p21.3	MET	rs11984636-T	0.9	2E-26	(Asian initial, BMI unadjusted)	0.175	[0.14-0.21] unit decrease	Affymetrix, Illumina [~ 1900000] (imputed)	N
736	chr8	19885725	19885726	rs11984636	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	HDL cholesterol levels	25,169 East Asian ancestry individuals	45,953 East Asian ancestry individuals	8p21.3	MET	rs11984636-T	0.9	6E-27	(BMI unadjusted)	0.175	[0.14-0.21] unit decrease	Affymetrix, Illumina [~ 2400000] (imputed)	N
736	chr8	19890467	19890468	rs11782626	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	8p21.3	NR	rs11782626-G	NR	2E-18		0.0861	[0.067-0.105] unit increase	Affymetrix [9000000] (imputed)	N
736	chr8	19890467	19890468	rs11782626	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	8p21.3	NR	rs11782626-G	NR	1E-17		0.0877	[0.068-0.108] unit decrease	Affymetrix [9000000] (imputed)	N
736	chr8	19890467	19890468	rs11782626	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	8p21.3	NR	rs11782626-G	NR	2E-10		0.0659	[0.046-0.086] unit decrease	Affymetrix [9000000] (imputed)	N
736	chr8	19890653	19890654	rs4557718	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	8p21.3	NR	rs4557718-C	NR	3E-57		0.0565	[0.05-0.063] unit increase	Affymetrix [9000000] (imputed)	N
736	chr8	19890653	19890654	rs4557718	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	8p21.3	NR	rs4557718-C	NR	6E-61		0.061	[0.054-0.068] unit decrease	Affymetrix [9000000] (imputed)	N
736	chr8	19890653	19890654	rs4557718	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	8p21.3	NR	rs4557718-C	NR	2E-34		0.0454	[0.038-0.053] unit decrease	Affymetrix [9000000] (imputed)	N
736	chr8	19891226	19891227	rs28526159	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	8p21.3	NR	rs28526159-?	NR	3E-13		0.03467777	[0.025-0.044] unit decrease	Illumina [31978265] (imputed)	N
736	chr8	19891226	19891227	rs28526159	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	8p21.3	NR	rs28526159-?	NR	8E-14		0.952313	[0.7-1.2] unit increase	Illumina [31978362] (imputed)	N
736	chr8	19891226	19891227	rs28526159	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p21.3	NR	rs28526159-C	NR	2E-54		0.063	unit increase	Affymetrix [at least 7091467] (imputed)	N
736	chr8	19891226	19891227	rs28526159	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p21.3	NR	rs28526159-C	0.65	1E-9	(East Asian)	0.092	unit increase	Affymetrix [at least 7091467] (imputed)	N
736	chr8	19891226	19891227	rs28526159	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p21.3	NR	rs28526159-C	0.387	2E-7	(Hispanic)	0.073	unit increase	Affymetrix [at least 7091467] (imputed)	N
736	chr8	19891226	19891227	rs28526159	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p21.3	NR	rs28526159-C	0.317	6E-39	(EA)	0.058	unit increase	Affymetrix [at least 7091467] (imputed)	N
736	chr8	19891226	19891227	rs28526159	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p21.3	NR	rs28526159-C	NR	1E-42		0.05	unit decrease	Affymetrix [at least 7091467] (imputed)	N
736	chr8	19891226	19891227	rs28526159	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p21.3	NR	rs28526159-C	0.387	4E-12	(Hispanic)	0.088	unit decrease	Affymetrix [at least 7091467] (imputed)	N
736	chr8	19891226	19891227	rs28526159	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p21.3	NR	rs28526159-C	0.317	1E-28	(EA)	0.045	unit decrease	Affymetrix [at least 7091467] (imputed)	N
736	chr8	19891226	19891227	rs28526159	26780889	Below JE	2016-01-19	Sci Rep	Meta-analysis of lipid-traits in Hispanics identifies novel loci, population-specific effects, and tissue-specific enrichment of eQTLs.	HDL cholesterol	4,383 Mexican ancestry individuals	7,876 Latin American/Hispanic individuals,  European ancestry individuals (Global Lipids Genetics Consortium et al, 2013)	8p21.3	LPL	rs28526159-T	0.618	8E-9	(Hispanic)	0.077	[0.052-0.102] unit increase	Affymetrix [at least 370268] (imputed)	N
736	chr8	19893296	19893297	rs139315015	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Saturated fatty acid levels	115,006 European ancestry individuals	NA	8p21.3		rs139315015-A	0.894714	6E-37		0.0840885	[0.071-0.097] unit increase	NR [11722792] (imputed)	N
736	chr8	19899045	19899046	rs4244457	28046027	Kim T	2017-01-03	PLoS One	Genome-Wide Association Study Reveals Four Loci for Lipid Ratios in the Korean Population and the Constitutional Subgroup.	Triglyceride to HDL cholesterol ratio	5,292 Korean ancestry individuals	2,567 Korean ancestry individuals		LPL	rs4244457-?	NR	1E-10		0.001594	[0.0011-0.0021] unit decrease	Affymetrix [310746]	N
736	chr8	19900670	19900671	rs7826306	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x short total sleep time interaction (2df test)	2,990 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,300 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, at least 11,842 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,350 European ancestry controls, 4,047 Hispanic/Latino controls	at least 220 African American short sleepers, 326 East Asian ancestry short sleepers, up to 5,288 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 1,292 East Asian ancestry controls, up to 20,844 European ancestry controls, 10,062 Hispanic controls	8p21.3	LPL	rs7826306-?	NR	6E-38		0.02609	[0.022-0.03] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
736	chr8	19902917	19902918	rs6993414	33763119	Read RW	2021-03-02	Front Genet	Genome-Wide Identification of Rare and Common Variants Driving Triglyceride Levels in a Nevada Population.	Triglyceride levels	9,183 European ancestry individuals	35,321 European ancestry individuals	8p21.3		rs6993414-G	NR	4E-52		15.110042	mg/dl decrease	NR [5712318]	N
736	chr8	19904565	19904566	rs73612177	30694715	Sakornsakolpat P	2019-01-29	Am J Respir Cell Mol Biol	Genome-Wide Association Analysis of Single Breath Diffusing Capacity of Carbon Monoxide (DLCO).	Diffusing capacity of carbon monoxide	2,584 European ancestry individuals with chronic obstructive pulmonary disease, 3,002 European ancestry healthy individuals, 343 African American individuals with chronic obstructive pulmonary disease, 1,006 African American healthy individuals	NA	8p21.3	LPL	rs73612177-C	0.12	5E-6	(African American)	0.29	0.16-0.41 unit increase	Illumina [NR] (imputed)	N
736	chr8	19905903	19905904	rs78299715	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	8p21.3		rs78299715-?	NR	4E-9				NR [~ 8900000] (imputed)	N
736	chr8	19906155	19906156	rs140064750	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	8p21.3	LPL	rs140064750-T	0.975453	4E-12		0.0439765	[0.032-0.056] unit increase	Affymetrix [NR] (imputed)	N
736	chr8	19906964	19906965	rs116339548	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	8p21.3	NR	rs116339548-C	NR	4E-12		0.0726	[0.052-0.093] unit decrease	Affymetrix [9000000] (imputed)	N
736	chr8	19906964	19906965	rs116339548	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	8p21.3	NR	rs116339548-C	NR	6E-21		0.103	[0.081-0.125] unit increase	Affymetrix [9000000] (imputed)	N
736	chr8	19906964	19906965	rs116339548	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	8p21.3	NR	rs116339548-C	NR	2E-13		0.081	[0.059-0.103] unit increase	Affymetrix [9000000] (imputed)	N
736	chr8	19907911	19907912	rs11991231	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	8p21.3		rs11991231-T	0.8963	2E-36		0.0846004	[0.071-0.098] unit decrease	NR [11722792] (imputed)	N
736	chr8	19907911	19907912	rs11991231	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_46:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs11991231-C	NR	3E-11		0.148012	[0.1-0.19] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19907911	19907912	rs11991231	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_40:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs11991231-C	NR	8E-11		0.145174	[0.1-0.19] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19907911	19907912	rs11991231	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_38:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs11991231-C	NR	2E-13		0.139517	[0.1-0.18] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19907911	19907912	rs11991231	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_36:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs11991231-C	NR	2E-13		0.135899	[0.1-0.172] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19907911	19907912	rs11991231	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_36:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs11991231-C	NR	5E-14		0.144148	[0.11-0.18] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19907911	19907912	rs11991231	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_36:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs11991231-C	NR	1E-13		0.138359	[0.1-0.17] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19907911	19907912	rs11991231	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_34:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs11991231-C	NR	2E-11		0.12044	[0.085-0.155] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19907911	19907912	rs11991231	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_34:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs11991231-C	NR	9E-13		0.138713	[0.1-0.18] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19907911	19907912	rs11991231	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_34:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs11991231-C	NR	1E-12		0.133329	[0.096-0.17] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19907911	19907912	rs11991231	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_32:1_[M+H]1+/Phosphatidylcholine-P_32:0_[M+H]1+/Phosphatidylethanolamine-O_35:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs11991231-C	NR	2E-10		0.121861	[0.084-0.16] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19907911	19907912	rs11991231	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_44:7_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs11991231-C	NR	9E-13		0.133987	[0.097-0.171] unit increase	Affymetrix [87696910] (imputed)	N
736	chr8	19907911	19907912	rs11991231	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_36:3_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs11991231-C	NR	2E-10		0.109975	[0.076-0.144] unit decrease	Affymetrix [87696910] (imputed)	N
736	chr8	19907911	19907912	rs11991231	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_36:2_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs11991231-C	NR	2E-10		0.108433	[0.075-0.142] unit decrease	Affymetrix [87696910] (imputed)	N
736	chr8	19907911	19907912	rs11991231	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_34:2_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs11991231-C	NR	4E-11		0.111997	[0.079-0.145] unit decrease	Affymetrix [87696910] (imputed)	N
736	chr8	19907911	19907912	rs11991231	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_34:1_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	8p21.3		rs11991231-C	NR	3E-10		0.109159	[0.075-0.143] unit decrease	Affymetrix [87696910] (imputed)	N
736	chr8	19907911	19907912	rs11991231	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	8p21.3	LPL	rs11991231-?	NR	6E-8	(M_VLDL_FC)	0.06468995	NR unit decrease	Illumina [609262]	N
736	chr8	19907911	19907912	rs11991231	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	8p21.3	LPL	rs11991231-?	NR	6E-12	(S_HDL_TG)	0.071420826	NR unit decrease	Illumina [609262]	N
736	chr8	19907911	19907912	rs11991231	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	8p21.3	LPL	rs11991231-?	NR	2E-12	(S_VLDL_L)	0.08333683	NR unit decrease	Illumina [609262]	N
736	chr8	19907911	19907912	rs11991231	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	8p21.3	LPL	rs11991231-?	NR	2E-11	(S_VLDL_C)	0.0812902	NR unit decrease	Illumina [609262]	N
736	chr8	19907911	19907912	rs11991231	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	8p21.3	LPL	rs11991231-?	NR	7E-10	(M_VLDL_FC)	0.090439975	NR unit decrease	Illumina [609262]	N
736	chr8	19907911	19907912	rs11991231	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	8p21.3	LPL	rs11991231-?	NR	4E-11	(S_VLDL_L)	0.09695685	NR unit decrease	Illumina [609262]	N
736	chr8	19907911	19907912	rs11991231	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	8p21.3	LPL	rs11991231-?	NR	2E-8	(S_VLDL_C)	0.08349798	NR unit decrease	Illumina [609262]	N
736	chr8	19907911	19907912	rs11991231	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	8p21.3	LPL	rs11991231-?	NR	2E-11	(S_HDL_TG)	0.083482906	NR unit decrease	Illumina [609262]	N
736	chr8	19910291	19910292	rs61435086	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	8p21.3	LPL	rs61435086-T	0.987687	4E-25		0.0892037	[0.072-0.106] unit decrease	Affymetrix [NR] (imputed)	N
736	chr8	19910560	19910561	rs144232975	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	8p21.3		rs144232975-G	0.981052	1E-9		0.0932837	[0.063-0.123] unit increase	NR [11722792] (imputed)	N
736	chr8	19912369	19912370	rs115849089	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small HDL	115,082 European ancestry individuals	NA	8p21.3		rs115849089-G	0.884939	3E-37		0.0826074	[0.07-0.095] unit decrease	NR [11722792] (imputed)	N
736	chr8	19912369	19912370	rs115849089	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial very large VLDL particle concentration	4,348 individuals	NA	8p21.3		rs115849089-A	0.127349429	3E-15		0.267284	[0.2-0.33] mmol/l decrease	Illumina [7701709] (imputed)	N
736	chr8	19912369	19912370	rs115849089	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial triglycerides levels in very small VLDL	4,348 individuals	NA	8p21.3		rs115849089-A	0.129350288	1E-18		0.292325	[0.23-0.36] mmol/l decrease	Illumina [7701709] (imputed)	N
736	chr8	19912369	19912370	rs115849089	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial triglycerides levels in very large VLDL	4,348 individuals	NA	8p21.3		rs115849089-A	0.127349429	3E-15		0.267229	[0.2-0.33] mmol/l decrease	Illumina [7701709] (imputed)	N
736	chr8	19912369	19912370	rs115849089	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial triglycerides levels in very large HDL	4,348 individuals	NA	8p21.3		rs115849089-A	0.132467012	7E-9		0.194513	[0.13-0.26] mmol/l decrease	Illumina [7701709] (imputed)	N
736	chr8	19912369	19912370	rs115849089	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial triglycerides levels in small LDL	4,348 individuals	NA	8p21.3		rs115849089-A	0.129349137	7E-11		0.215928	[0.15-0.28] mmol/l decrease	Illumina [7701709] (imputed)	N
736	chr8	19912369	19912370	rs115849089	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial triglycerides levels in small HDL	4,348 individuals	NA	8p21.3		rs115849089-A	0.129561278	7E-17		0.276491	[0.21-0.34] mmol/l decrease	Illumina [7701709] (imputed)	N
736	chr8	19912369	19912370	rs115849089	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial triglycerides levels in medium HDL	4,348 individuals	NA	8p21.3		rs115849089-A	0.129350288	5E-11		0.217357	[0.15-0.28] mmol/l decrease	Illumina [7701709] (imputed)	N
736	chr8	19912369	19912370	rs115849089	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial triglycerides levels in large VLDL	4,348 individuals	NA	8p21.3		rs115849089-A	0.12911046	4E-18		0.289342	[0.22-0.35] mmol/l decrease	Illumina [7701709] (imputed)	N
736	chr8	19912369	19912370	rs115849089	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial triglycerides levels in IDL	4,348 individuals	NA	8p21.3		rs115849089-A	0.129345536	2E-10		0.211569	[0.15-0.28] mmol/l decrease	Illumina [7701709] (imputed)	N
736	chr8	19912369	19912370	rs115849089	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial triglycerides in HDL	4,348 individuals	NA	8p21.3		rs115849089-A	0.129320538	4E-13		0.240256	[0.18-0.3] mmol/l decrease	Illumina [7701709] (imputed)	N
736	chr8	19912369	19912370	rs115849089	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total lipids in very large VLDL	4,348 individuals	NA	8p21.3		rs115849089-A	0.127349429	3E-15		0.26737	[0.2-0.33] mmol/l decrease	Illumina [7701709] (imputed)	N
736	chr8	19912369	19912370	rs115849089	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total lipids in large VLDL	4,348 individuals	NA	8p21.3		rs115849089-A	0.12911046	3E-18		0.290125	[0.23-0.36] mmol/l decrease	Illumina [7701709] (imputed)	N
736	chr8	19912369	19912370	rs115849089	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total cholesterol in very large VLDL	4,348 individuals	NA	8p21.3		rs115849089-A	0.127349429	3E-15		0.26728	[0.2-0.33] mmol/l decrease	Illumina [7701709] (imputed)	N
736	chr8	19912369	19912370	rs115849089	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total cholesterol in large VLDL	4,348 individuals	NA	8p21.3		rs115849089-A	0.12911046	2E-18		0.292387	[0.23-0.36] mmol/l decrease	Illumina [7701709] (imputed)	N
736	chr8	19912369	19912370	rs115849089	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total cholesterol in HDL2	4,348 individuals	NA	8p21.3		rs115849089-A	0.12956308	3E-16		0.271101	[0.21-0.34] mmol/l increase	Illumina [7701709] (imputed)	N
736	chr8	19912369	19912370	rs115849089	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial phospholipid levels in very large VLDL	4,348 individuals	NA	8p21.3		rs115849089-A	0.127349429	8E-15		0.263298	[0.2-0.33] mmol/l decrease	Illumina [7701709] (imputed)	N
736	chr8	19912369	19912370	rs115849089	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial phospholipid levels in large VLDL	4,348 individuals	NA	8p21.3		rs115849089-A	0.12911046	3E-18		0.289896	[0.22-0.35] mmol/l decrease	Illumina [7701709] (imputed)	N
736	chr8	19912369	19912370	rs115849089	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial monounsaturated fatty acids (16:1, 18:1)	4,348 individuals	NA	8p21.3		rs115849089-A	0.129615089	5E-13		0.241357	[0.18-0.31] mmol/l decrease	Illumina [7701709] (imputed)	N
736	chr8	19912369	19912370	rs115849089	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial large VLDL particle concentration	4,348 individuals	NA	8p21.3		rs115849089-A	0.12911046	3E-18		0.290379	[0.23-0.36] mmol/l decrease	Illumina [7701709] (imputed)	N
736	chr8	19912369	19912370	rs115849089	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial free cholesterol in very large VLDL	4,348 individuals	NA	8p21.3		rs115849089-A	0.127349429	9E-15		0.262643	[0.2-0.33] mmol/l decrease	Illumina [7701709] (imputed)	N
736	chr8	19912369	19912370	rs115849089	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial free cholesterol in large VLDL	4,348 individuals	NA	8p21.3		rs115849089-A	0.12911046	4E-18		0.288686	[0.22-0.35] mmol/l decrease	Illumina [7701709] (imputed)	N
736	chr8	19912369	19912370	rs115849089	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial cholesterol esters in very large VLDL	4,348 individuals	NA	8p21.3		rs115849089-A	0.127349429	1E-15		0.271252	[0.21-0.34] mmol/l decrease	Illumina [7701709] (imputed)	N
736	chr8	19912369	19912370	rs115849089	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial cholesterol esters in large VLDL	4,348 individuals	NA	8p21.3		rs115849089-A	0.12911046	7E-19		0.295508	[0.23-0.36] mmol/l decrease	Illumina [7701709] (imputed)	N
736	chr8	19912369	19912370	rs115849089	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting triglycerides levels in small LDL	4,734 individuals	NA	8p21.3		rs115849089-A	0.130174815	6E-11		0.20786	[0.15-0.27] mmol/l decrease	Illumina [7701709] (imputed)	N
736	chr8	19912369	19912370	rs115849089	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting triglycerides levels in small HDL	4,734 individuals	NA	8p21.3		rs115849089-A	0.130266504	1E-16		0.262997	[0.2-0.32] mmol/l decrease	Illumina [7701709] (imputed)	N
736	chr8	19912369	19912370	rs115849089	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting triglycerides levels in IDL	4,734 individuals	NA	8p21.3		rs115849089-A	0.13017693	7E-12		0.217378	[0.16-0.28] mmol/l decrease	Illumina [7701709] (imputed)	N
736	chr8	19912369	19912370	rs115849089	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting triglycerides in HDL	4,734 individuals	NA	8p21.3		rs115849089-A	0.130039438	2E-11		0.212945	[0.15-0.27] mmol/l decrease	Illumina [7701709] (imputed)	N
736	chr8	19912369	19912370	rs115849089	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total lipids in chylomicrons and extremely large VLDL	4,734 individuals	NA	8p21.3		rs115849089-A	0.124635944	3E-10		0.223455	[0.15-0.29] mmol/l decrease	Illumina [7701709] (imputed)	N
736	chr8	19912369	19912370	rs115849089	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total cholesterol in chylomicrons and extremely large VLDL	4,734 individuals	NA	8p21.3		rs115849089-A	0.124635944	3E-10		0.223547	[0.15-0.29] mmol/l decrease	Illumina [7701709] (imputed)	N
736	chr8	19912369	19912370	rs115849089	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting phospholipid levels in chylomicrons and extremely large VLDL	4,734 individuals	NA	8p21.3		rs115849089-A	0.124635944	5E-10		0.221182	[0.15-0.29] mmol/l decrease	Illumina [7701709] (imputed)	N
736	chr8	19912369	19912370	rs115849089	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting free cholesterol in chylomicrons and extremely large VLDL	4,734 individuals	NA	8p21.3		rs115849089-A	0.124635944	1E-10		0.230037	[0.16-0.3] mmol/l decrease	Illumina [7701709] (imputed)	N
736	chr8	19912369	19912370	rs115849089	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting chylomicrons and extremely large VLDL particle concentration	4,734 individuals	NA	8p21.3		rs115849089-A	0.124635944	3E-10		0.223016	[0.15-0.29] mmol/l decrease	Illumina [7701709] (imputed)	N
736	chr8	19912369	19912370	rs115849089	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting cholesterol esters in chylomicrons and extremely large VLDL	4,734 individuals	NA	8p21.3		rs115849089-A	0.124642951	2E-9		0.213694	[0.14-0.28] mmol/l decrease	Illumina [7701709] (imputed)	N
736	chr8	19912369	19912370	rs115849089	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	8p21.3		rs115849089-A	0.115106	6E-42		0.047921397	[0.041-0.055] unit increase	Affymetrix [93095623] (imputed)	N
736	chr8	19912369	19912370	rs115849089	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	8p21.3		rs115849089-A	0.115187	2E-13		0.030858098	[0.023-0.039] unit increase	Affymetrix [93095623] (imputed)	N
736	chr8	19912369	19912370	rs115849089	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	8p21.3		rs115849089-A	0.115158	6E-24		0.0351809	[0.028-0.042] unit decrease	Affymetrix [93095623] (imputed)	N
736	chr8	19912369	19912370	rs115849089	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8p21.3	NR	rs115849089-G	0.884345	7E-66				Affymetrix, Illumina [22063850] (imputed)	N
736	chr8	19912369	19912370	rs115849089	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	8p21.3	NR	rs115849089-G	0.882959	5E-69		0.051558	[0.046-0.057] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
736	chr8	19912369	19912370	rs115849089	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	8p21.3	NR	rs115849089-A	0.116004	3E-27		0.03388	[0.028-0.04] SD unit decrease	Affymetrix, Illumina [50282193] (imputed)	N
736	chr8	19912369	19912370	rs115849089	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	High density lipoprotein cholesterol levels	2,045 European ancestry individuals	NA	8p21.3	NR	rs115849089-A	NR	7E-6		0.2317	[0.13-0.33] unit increase	Illumina [~ 9300000] (imputed)	N
736	chr8	19912369	19912370	rs115849089	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	8p21.3	NR	rs115849089-?	NR	2E-23		0.07395265	[0.059-0.088] unit decrease	Illumina [31978265] (imputed)	N
736	chr8	19912369	19912370	rs115849089	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	8p21.3	NR	rs115849089-?	NR	4E-15		1.599229	[1.2-2] unit increase	Illumina [31978362] (imputed)	N
736	chr8	19912369	19912370	rs115849089	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p21.3	NR	rs115849089-G	NR	8E-182		0.168	unit increase	Affymetrix [at least 7091467] (imputed)	N
736	chr8	19912369	19912370	rs115849089	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p21.3	NR	rs115849089-G	0.904	3E-17	(Hispanic)	0.197	unit increase	Affymetrix [at least 7091467] (imputed)	N
736	chr8	19912369	19912370	rs115849089	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p21.3	NR	rs115849089-G	0.879	1E-152	(EA)	0.168	unit increase	Affymetrix [at least 7091467] (imputed)	N
736	chr8	19912369	19912370	rs115849089	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p21.3	NR	rs115849089-G	0.875	6E-16	(East Asian)	0.178	unit increase	Affymetrix [at least 7091467] (imputed)	N
736	chr8	19912369	19912370	rs115849089	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p21.3	NR	rs115849089-G	NR	2E-128		0.129	unit decrease	Affymetrix [at least 7091467] (imputed)	N
736	chr8	19912369	19912370	rs115849089	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p21.3	NR	rs115849089-G	0.904	5E-13	(Hispanic)	0.153	unit decrease	Affymetrix [at least 7091467] (imputed)	N
736	chr8	19912369	19912370	rs115849089	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p21.3	NR	rs115849089-G	0.879	5E-106	(EA)	0.127	unit decrease	Affymetrix [at least 7091467] (imputed)	N
736	chr8	19912369	19912370	rs115849089	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p21.3	NR	rs115849089-G	0.875	3E-11	(East Asian)	0.135	unit decrease	Affymetrix [at least 7091467] (imputed)	N
736	chr8	19912369	19912370	rs115849089	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Triglyceride levels in small VLDL	8,372 Finnish ancestry males	NA	8p21.3	LPL	rs115849089-?	NR	4E-15		0.2	unit decrease	Illumina [15144991] (imputed)	N
736	chr8	19912369	19912370	rs115849089	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Total triglycerides levels	8,372 Finnish ancestry males	NA	8p21.3	LPL	rs115849089-?	NR	6E-13		0.184	unit decrease	Illumina [15144991] (imputed)	N
736	chr8	19912369	19912370	rs115849089	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	8p21.3	NR	rs115849089-A	NR	2E-19		0.0556565	[0.043-0.068] unit increase	Affymetrix [16832071] (imputed)	N
736	chr8	19912369	19912370	rs115849089	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	8p21.3	intergenic	rs115849089-A	0.1163	8E-21		0.0518692	[0.041-0.063] unit increase	Affymetrix [~ 2500000] (imputed)	N
736	chr8	19912369	19912370	rs115849089	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin concentration	172,851 European ancestry individuals	NA	8p21.3	intergenic	rs115849089-A	0.1165	6E-9		0.0314433	[0.021-0.042] unit decrease	Affymetrix [~ 2500000] (imputed)	N
736	chr8	19912369	19912370	rs115849089	27005778	Kettunen J	2016-03-23	Nat Commun	Genome-wide study for circulating metabolites identifies 62 loci and reveals novel systemic effects of LPA.	Metabolite levels (lipoprotein measures)	2,118 Erasmus Rucphen (founder/genetic isolate), 22,807 European ancestry individuals	NA	8p21.3	LPL	rs115849089-A	0.11	2E-25	(Triglycerides in small VLDL)	0.18	[0.14-0.22] unit decrease	Affymetrix, Illumina, Perlegen [12133295] (imputed)	N
736	chr8	19912369	19912370	rs115849089	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	Triglycerides	up to 62,166 European ancestry individuals	NA	8p21.3	LPL	rs115849089-G	0.89	9E-84		0.186	[0.17-0.21] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
736	chr8	19912369	19912370	rs115849089	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	HDL cholesterol	up to 62,166 European ancestry individuals	NA	8p21.3	LPL	rs115849089-A	0.11	2E-63		0.162	[0.14-0.18] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
736	chr8	19912369	19912370	rs115849089	22286219	Kettunen J	2012-01-29	Nat Genet	Genome-wide association study identifies multiple loci influencing human serum metabolite levels.	Lipid metabolism phenotypes	8,330 European ancestry individuals	NA	8p21.3	LPL	rs115849089-?	NR	4E-15	(M-VLDL-PL)	0.22	[0.16-0.28] unit decrease	Illumina [~ 7700000] (imputed)	N
736	chr8	19913832	19913833	rs118045108	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	8p21.3	NR	rs118045108-T	NR	4E-12		0.0552	[0.04-0.071] unit increase	Affymetrix [9000000] (imputed)	N
736	chr8	19913832	19913833	rs118045108	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	8p21.3	NR	rs118045108-T	NR	4E-9		0.0489	[0.033-0.065] unit decrease	Affymetrix [9000000] (imputed)	N
736	chr8	19914597	19914598	rs6586891	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	8p21.3		rs6586891-C	0.352996	2E-8		0.0234113	[0.015-0.032] unit decrease	NR [11722792] (imputed)	N
736	chr8	19914597	19914598	rs6586891	32226016	Hu Y	2020-03-30	PLoS Genet	Minority-centric meta-analyses of blood lipid levels identify novel loci in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Total triglycerides levels	17,563 African American individuals, 23,077 Hispanics ancestry individuals, 2,381 East Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals, 22,898 European ancestry individuals	up to 71,987 African American individuals, up to 34,899 Hispanics ancestry individuals, up to 315,133 European ancestry individuals, up to 9,593 Asian ancestry individuals, up to 94,674 European ancestry, East Asian ancestry, African American, South Asian ancestry, Hispanic individuals	8p21.3		rs6586891-?	NR	1E-20		0.084	[0.066-0.102] mg/dL decrease	Affymetrix, Illumina [NR] (imputed)	N
736	chr8	19914597	19914598	rs6586891	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x long total sleep time interaction (2df test)	at least 2,926 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, at least 7,664 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,906 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 31,986 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 317 East Asian ancestry long sleepers, up to 5,171 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 928 African American controls, 1,301 East Asian ancestry controls, up to 20,961 European ancestry controls, 10,064 Hispanic controls	8p21.3	LPL	rs6586891-?	NR	4E-32		0.0252	[0.021-0.03] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
736	chr8	19917470	19917471	rs78376313	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	8p21.3	SLC18A1	rs78376313-T	0.967048	5E-17		0.048208	[0.037-0.059] unit decrease	Affymetrix [NR] (imputed)	N
736	chr8	19919654	19919655	rs4128744	30911093	Bandesh K	2019-03-25	J Hum Genet	Genome-wide association study of blood lipids in Indians confirms universality of established variants.	Triglyceride levels	1,036 Indian ancestry individuals	4,235 Indian ancestry individuals, 188,577 European ancestry individuals, 7,898 East Asian, South Asian and African ancestry individuals	8p21.3	LPL	rs4128744-A	0.11	2E-9	(Indian)	13.59	[9.12-18.06] unit decrease	Illumina [551825]	N
736	chr8	19919654	19919655	rs4128744	30911093	Bandesh K	2019-03-25	J Hum Genet	Genome-wide association study of blood lipids in Indians confirms universality of established variants.	High density lipoprotein cholesterol levels	1,036 Indian ancestry individuals	4,235 Indian ancestry individuals, 188,577 European ancestry individuals, 7,898 East Asian, South Asian and African ancestry individuals	8p21.3	LPL	rs4128744-A	0.11	3E-9	(Indian)	2.21	[1.48-2.94] unit increase	Illumina [551825]	N
737	chr8	19928012	19928013	rs6999158	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x long total sleep time interaction (2df test)	2,933 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, up to 7,870 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,975 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 32,171 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 616 East Asian ancestry long sleepers, up to 9,486 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 929 African American controls, 2,517 East Asian ancestry controls, up to 38,126 European ancestry controls, 10,063 Hispanic controls	8p21.3	LPL	rs6999158-?	NR	9E-53		0.016	[0.014-0.018] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
737	chr8	19928012	19928013	rs6999158	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	8p21.3	NR	rs6999158-?	NR	1E-17		0.03663966	[0.028-0.045] unit decrease	Illumina [31978265] (imputed)	N
737	chr8	19928012	19928013	rs6999158	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	8p21.3	NR	rs6999158-?	NR	6E-9		0.6975349	[0.46-0.93] unit increase	Illumina [31978362] (imputed)	N
737	chr8	19928012	19928013	rs6999158	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p21.3	NR	rs6999158-T	NR	2E-94		0.084	unit increase	Affymetrix [at least 7091467] (imputed)	N
737	chr8	19928012	19928013	rs6999158	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p21.3	NR	rs6999158-T	0.727	3E-7	(Hispanic)	0.079	unit increase	Affymetrix [at least 7091467] (imputed)	N
737	chr8	19928012	19928013	rs6999158	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p21.3	NR	rs6999158-T	0.715	3E-11	(East Asian)	0.106	unit increase	Affymetrix [at least 7091467] (imputed)	N
737	chr8	19928012	19928013	rs6999158	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p21.3	NR	rs6999158-T	0.708	3E-79	(EA)	0.085	unit increase	Affymetrix [at least 7091467] (imputed)	N
737	chr8	19928012	19928013	rs6999158	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p21.3	NR	rs6999158-T	NR	1E-63		0.063	unit decrease	Affymetrix [at least 7091467] (imputed)	N
737	chr8	19928012	19928013	rs6999158	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p21.3	NR	rs6999158-T	0.727	1E-7	(Hispanic)	0.073	unit decrease	Affymetrix [at least 7091467] (imputed)	N
737	chr8	19928012	19928013	rs6999158	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p21.3	NR	rs6999158-T	0.708	3E-52	(EA)	0.063	unit decrease	Affymetrix [at least 7091467] (imputed)	N
737	chr8	19928159	19928160	rs10106652	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x short total sleep time interaction (2df test)	3,007 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,474 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, up to 11,901 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,567 European ancestry controls, 4,047 Hispanic/Latino controls	up to 221 African American short sleepers, 629 East Asian ancestry short sleepers, up to 9,585 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 2,504 East Asian ancestry controls, up to 38,027 European ancestry controls, 10,061 Hispanic controls	8p21.3	LPL	rs10106652-?	NR	7E-50		0.01615	[0.014-0.018] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
737	chr8	19928159	19928160	rs10106652	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	8p21.3	NR	rs10106652-?	NR	2E-17		0.03838119	[0.03-0.047] unit decrease	Illumina [31978265] (imputed)	N
737	chr8	19928159	19928160	rs10106652	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	8p21.3	NR	rs10106652-?	NR	1E-9		0.765241	[0.52-1.01] unit increase	Illumina [31978362] (imputed)	N
737	chr8	19928159	19928160	rs10106652	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p21.3	NR	rs10106652-G	NR	1E-85		0.082	unit increase	Affymetrix [at least 7091467] (imputed)	N
737	chr8	19928159	19928160	rs10106652	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p21.3	NR	rs10106652-G	0.744	4E-7	(Hispanic)	0.079	unit increase	Affymetrix [at least 7091467] (imputed)	N
737	chr8	19928159	19928160	rs10106652	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p21.3	NR	rs10106652-G	0.725	1E-70	(EA)	0.082	unit increase	Affymetrix [at least 7091467] (imputed)	N
737	chr8	19928159	19928160	rs10106652	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p21.3	NR	rs10106652-G	0.718	7E-11	(East Asian)	0.104	unit increase	Affymetrix [at least 7091467] (imputed)	N
737	chr8	19928159	19928160	rs10106652	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p21.3	NR	rs10106652-G	NR	1E-57		0.061	unit decrease	Affymetrix [at least 7091467] (imputed)	N
737	chr8	19928159	19928160	rs10106652	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p21.3	NR	rs10106652-G	0.744	5E-9	(Hispanic)	0.083	unit decrease	Affymetrix [at least 7091467] (imputed)	N
737	chr8	19928159	19928160	rs10106652	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p21.3	NR	rs10106652-G	0.725	8E-46	(EA)	0.059	unit decrease	Affymetrix [at least 7091467] (imputed)	N
737	chr8	19928159	19928160	rs10106652	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	8p21.3	intergenic	rs10106652-A	0.273	7E-11		0.048	[0.034-0.062] unit decrease	Affymetrix [7947838] (imputed)	N
737	chr8	19928581	19928582	rs9644568	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	HDL cholesterol	19,223 British ancestry individuals from 6863 families.	NA	8p21.3	NR	rs9644568-A	0.254704	3E-14		0.12829615	[0.095-0.161] mg/dl increase	Illumina [24111857] (imputed)	N
737	chr8	19928581	19928582	rs9644568	23505323	Weissglas-Volkov D	2013-03-15	J Med Genet	Genomic study in Mexicans identifies a new locus for triglycerides and refines European lipid loci.	Hypertriglyceridemia	1,122 Mexican ancestry cases, 1,118 Mexican ancestry controls	1,067 Mexican ancestry cases, 1,054 Mexican ancestry controls	8p21.3	SLC18A1, INTS10, LPL	rs9644568-?	0.93	4E-11		2.0	[1.80-2.20]	Illumina [1361436] (imputed)	N
737	chr8	19929197	19929198	rs34351848	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	8p21.3		rs34351848-T	0.290815	6E-13		0.018256618	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
737	chr8	19929197	19929197	rs34669405	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to omega-3 fatty acids	115,006 European ancestry individuals	NA	8p21.3		rs34669405-TC	0.710316	1E-9		0.0267277	[0.018-0.035] unit decrease	NR [11722792] (imputed)	N
737	chr8	19929777	19929778	rs13439782	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	8p21.3		rs13439782-?	NR	3E-9		0.00598362	[0.004-0.008] unit increase	NR [NR]	N
737	chr8	19932862	19932863	rs80026582	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	8p21.3		rs80026582-?	NR	9E-13		0.011753	[0.0085-0.015] unit increase	NR [NR]	N
737	chr8	19933895	19933896	rs4407894	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	8p21.3	NR	rs4407894-?	NR	7E-14		0.03464963	[0.026-0.044] unit decrease	Illumina [31978265] (imputed)	N
737	chr8	19933895	19933896	rs4407894	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	8p21.3	NR	rs4407894-?	NR	9E-16		1.011264	[0.76-1.26] unit increase	Illumina [31978362] (imputed)	N
737	chr8	19933895	19933896	rs4407894	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p21.3	NR	rs4407894-T	NR	4E-72		0.072	unit increase	Affymetrix [at least 7091467] (imputed)	N
737	chr8	19933895	19933896	rs4407894	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p21.3	NR	rs4407894-T	0.626	2E-11	(East Asian)	0.103	unit increase	Affymetrix [at least 7091467] (imputed)	N
737	chr8	19933895	19933896	rs4407894	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p21.3	NR	rs4407894-T	0.408	2E-9	(Hispanic)	0.086	unit increase	Affymetrix [at least 7091467] (imputed)	N
737	chr8	19933895	19933896	rs4407894	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p21.3	NR	rs4407894-T	0.345	5E-53	(EA)	0.068	unit increase	Affymetrix [at least 7091467] (imputed)	N
737	chr8	19933895	19933896	rs4407894	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p21.3	NR	rs4407894-T	NR	5E-61		0.06	unit decrease	Affymetrix [at least 7091467] (imputed)	N
737	chr8	19933895	19933896	rs4407894	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p21.3	NR	rs4407894-T	0.626	3E-6	(East Asian)	0.066	unit decrease	Affymetrix [at least 7091467] (imputed)	N
737	chr8	19933895	19933896	rs4407894	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p21.3	NR	rs4407894-T	0.408	6E-16	(Hispanic)	0.105	unit decrease	Affymetrix [at least 7091467] (imputed)	N
737	chr8	19933895	19933896	rs4407894	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p21.3	NR	rs4407894-T	0.345	7E-43	(EA)	0.055	unit decrease	Affymetrix [at least 7091467] (imputed)	N
737	chr8	19934304	19934305	rs28550053	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium HDL	115,082 European ancestry individuals	NA	8p21.3		rs28550053-A	0.825835	1E-13		0.0397016	[0.029-0.05] unit increase	NR [11722792] (imputed)	N
737	chr8	19934304	19934305	rs28550053	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in HDL	115,082 European ancestry individuals	NA	8p21.3		rs28550053-A	0.825835	1E-15		0.0427317	[0.032-0.053] unit increase	NR [11722792] (imputed)	N
737	chr8	19934304	19934305	rs28550053	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	8p21.3		rs28550053-A	0.825835	1E-8		0.0312319	[0.021-0.042] unit decrease	NR [11722792] (imputed)	N
737	chr8	19934304	19934305	rs28550053	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	8p21.3		rs28550053-A	0.825835	9E-15		0.040347	[0.03-0.051] unit decrease	NR [11722792] (imputed)	N
737	chr8	19934304	19934305	rs28550053	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	8p21.3		rs28550053-A	0.825835	6E-15		0.0401148	[0.03-0.05] unit decrease	NR [11722792] (imputed)	N
737	chr8	19934338	19934339	rs80302977	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	8p21.3	AC100802.3	rs80302977-C	0.078672	2E-9		0.028556451	[0.019-0.038] unit increase	Affymetrix [93095623] (imputed)	N
737	chr8	19936686	19936687	rs28597716	33109212	Chang H	2020-10-28	BMC Med	Genetic architecture of cardiometabolic risks in people living with HIV.	Triglyceride levels in HIV infection	3,095 European ancestry individuals, 3,189 African American individuals	NA	8p21.3	LPL, SLC18A1	rs28597716-?		2E-6	(EA)	0.14377508	[0.085-0.203] unit decrease	Illumina [13620258] (imputed)	N
737	chr8	19936686	19936687	rs28597716	31589552	Lind L	2019-10-07	Metab Syndr Relat Disord	Genome-Wide Association Study of the Metabolic Syndrome in UK Biobank.	Metabolic syndrome	291,107 European ancestry individuals	NA	8p21.3	SLC18A1	rs28597716-G	0.189687	1E-24		0.152184	[0.14-0.17] unit decrease	Affymetrix [9463307] (imputed)	N
737	chr8	19937851	19937852	rs73667496	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of monounsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	8p21.3		rs73667496-C	0.947423	4E-9		0.0525535	[0.035-0.07] unit increase	NR [11722792] (imputed)	N
737	chr8	19938945	19938946	rs7001307	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	8p21.3	AC100802.3	rs7001307-C	0.189197	3E-16		0.023757776	[0.018-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
737	chr8	19938945	19938946	rs7001307	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	8p21.3	AC100802.3	rs7001307-C	0.18921	1E-16		0.024028352	[0.018-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
737	chr8	19938945	19938946	rs7001307	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	8p21.3	AC100802.3	rs7001307-C	0.189153	2E-11		0.019384284	[0.014-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
737	chr8	19938945	19938946	rs7001307	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	8p21.3	AC100802.3	rs7001307-C	0.189167	7E-12		0.01991962	[0.014-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
737	chr8	19939048	19939049	rs7015766	31201950	Lutz MW	2019-03-06	Neurobiol Aging	Analysis of pleiotropic genetic effects on cognitive impairment, systemic inflammation, and plasma lipids in the Health and Retirement Study.	High density lipoprotein cholesterol levels	6,545 European ancestry individuals	NA	8p21.3		rs7015766-C	0.07	1E-7		0.3	[0.22-0.49] unit decrease	Illumina [19468843] (imputed)	N
737	chr8	19939604	19939605	rs181349205	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	8p21.3		rs181349205-G	0.992787	2E-18		0.207596	[0.16-0.25] unit decrease	NR [11722792] (imputed)	N
737	chr8	19939604	19939605	rs181349205	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	8p21.3		rs181349205-G	0.99279	2E-17		0.199912	[0.15-0.25] unit decrease	NR [11722792] (imputed)	N
737	chr8	19939604	19939605	rs181349205	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	8p21.3		rs181349205-G	0.992787	1E-11		0.1642	[0.12-0.21] unit decrease	NR [11722792] (imputed)	N
737	chr8	19939604	19939605	rs181349205	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	8p21.3		rs181349205-G	0.992787	2E-15		0.191857	[0.14-0.24] unit decrease	NR [11722792] (imputed)	N
737	chr8	19939604	19939605	rs181349205	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	8p21.3		rs181349205-G	0.992787	2E-27		0.258019	[0.21-0.3] unit decrease	NR [11722792] (imputed)	N
737	chr8	19939604	19939605	rs181349205	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	8p21.3		rs181349205-G	0.992787	3E-14		0.180492	[0.13-0.23] unit decrease	NR [11722792] (imputed)	N
737	chr8	19939604	19939605	rs181349205	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	8p21.3		rs181349205-G	0.992787	3E-11		0.163172	[0.11-0.21] unit decrease	NR [11722792] (imputed)	N
737	chr8	19939604	19939605	rs181349205	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	8p21.3		rs181349205-G	0.992787	1E-22		0.234698	[0.19-0.28] unit decrease	NR [11722792] (imputed)	N
737	chr8	19939604	19939605	rs181349205	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	8p21.3		rs181349205-G	0.992787	3E-12		0.170635	[0.12-0.22] unit decrease	NR [11722792] (imputed)	N
737	chr8	19939604	19939605	rs181349205	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	8p21.3		rs181349205-G	0.992787	6E-21		0.221585	[0.18-0.27] unit decrease	NR [11722792] (imputed)	N
737	chr8	19939604	19939605	rs181349205	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	8p21.3		rs181349205-G	0.992787	7E-19		0.213872	[0.17-0.26] unit decrease	NR [11722792] (imputed)	N
737	chr8	19939604	19939605	rs181349205	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very small VLDL	115,082 European ancestry individuals	NA	8p21.3		rs181349205-G	0.992787	2E-14		0.187242	[0.14-0.24] unit decrease	NR [11722792] (imputed)	N
737	chr8	19939604	19939605	rs181349205	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large VLDL	115,082 European ancestry individuals	NA	8p21.3		rs181349205-G	0.992787	9E-18		0.205885	[0.16-0.25] unit decrease	NR [11722792] (imputed)	N
737	chr8	19939604	19939605	rs181349205	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small VLDL	115,082 European ancestry individuals	NA	8p21.3		rs181349205-G	0.992787	5E-19		0.21576	[0.17-0.26] unit decrease	NR [11722792] (imputed)	N
737	chr8	19939604	19939605	rs181349205	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small LDL	115,082 European ancestry individuals	NA	8p21.3		rs181349205-G	0.992787	6E-16		0.196933	[0.15-0.24] unit decrease	NR [11722792] (imputed)	N
737	chr8	19939604	19939605	rs181349205	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small HDL	115,082 European ancestry individuals	NA	8p21.3		rs181349205-G	0.992787	3E-15		0.191646	[0.14-0.24] unit decrease	NR [11722792] (imputed)	N
737	chr8	19939604	19939605	rs181349205	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium VLDL	115,082 European ancestry individuals	NA	8p21.3		rs181349205-G	0.992787	1E-15		0.194518	[0.15-0.24] unit decrease	NR [11722792] (imputed)	N
737	chr8	19939604	19939605	rs181349205	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium LDL	115,082 European ancestry individuals	NA	8p21.3		rs181349205-G	0.992787	2E-12		0.171698	[0.12-0.22] unit decrease	NR [11722792] (imputed)	N
737	chr8	19939604	19939605	rs181349205	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large VLDL	115,082 European ancestry individuals	NA	8p21.3		rs181349205-G	0.992787	3E-16		0.197722	[0.15-0.25] unit decrease	NR [11722792] (imputed)	N
737	chr8	19939604	19939605	rs181349205	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	8p21.3		rs181349205-G	0.992787	5E-13		0.175142	[0.13-0.22] unit decrease	NR [11722792] (imputed)	N
737	chr8	19939604	19939605	rs181349205	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in VLDL	115,082 European ancestry individuals	NA	8p21.3		rs181349205-G	0.992787	4E-17		0.203143	[0.16-0.25] unit decrease	NR [11722792] (imputed)	N
737	chr8	19939604	19939605	rs181349205	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in IDL	115,082 European ancestry individuals	NA	8p21.3		rs181349205-G	0.992787	4E-9		0.144304	[0.096-0.192] unit decrease	NR [11722792] (imputed)	N
737	chr8	19939604	19939605	rs181349205	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total triglycerides levels	115,082 European ancestry individuals	NA	8p21.3		rs181349205-G	0.992787	4E-16		0.19729	[0.15-0.24] unit decrease	NR [11722792] (imputed)	N
737	chr8	19939604	19939605	rs181349205	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large VLDL	115,082 European ancestry individuals	NA	8p21.3		rs181349205-G	0.992787	2E-17		0.204641	[0.16-0.25] unit decrease	NR [11722792] (imputed)	N
737	chr8	19939604	19939605	rs181349205	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large HDL	115,082 European ancestry individuals	NA	8p21.3		rs181349205-G	0.992787	4E-8		0.123732	[0.079-0.168] unit increase	NR [11722792] (imputed)	N
737	chr8	19939604	19939605	rs181349205	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large VLDL	115,082 European ancestry individuals	NA	8p21.3		rs181349205-G	0.992787	7E-17		0.202188	[0.15-0.25] unit decrease	NR [11722792] (imputed)	N
737	chr8	19939604	19939605	rs181349205	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	8p21.3		rs181349205-G	0.992787	1E-18		0.194784	[0.15-0.24] unit increase	NR [11722792] (imputed)	N
737	chr8	19939604	19939605	rs181349205	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	8p21.3		rs181349205-G	0.992787	4E-14		0.182628	[0.14-0.23] unit decrease	NR [11722792] (imputed)	N
737	chr8	19939604	19939605	rs181349205	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in VLDL	115,082 European ancestry individuals	NA	8p21.3		rs181349205-G	0.992787	3E-13		0.179159	[0.13-0.23] unit decrease	NR [11722792] (imputed)	N
737	chr8	19939604	19939605	rs181349205	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Sphingomyelin levels	115,006 European ancestry individuals	NA	8p21.3		rs181349205-G	0.992794	2E-9		0.140501	[0.094-0.187] unit increase	NR [11722792] (imputed)	N
737	chr8	19939604	19939605	rs181349205	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	8p21.3		rs181349205-G	0.992794	6E-28		0.255052	[0.21-0.3] unit decrease	NR [11722792] (imputed)	N
737	chr8	19939604	19939605	rs181349205	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	8p21.3		rs181349205-G	0.992794	7E-9		0.140133	[0.093-0.187] unit increase	NR [11722792] (imputed)	N
737	chr8	19939604	19939605	rs181349205	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to monounsaturated fatty acids	115,006 European ancestry individuals	NA	8p21.3		rs181349205-G	0.992794	5E-16		0.195101	[0.15-0.24] unit increase	NR [11722792] (imputed)	N
737	chr8	19939604	19939605	rs181349205	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	8p21.3		rs181349205-G	0.992794	1E-8		0.137665	[0.09-0.185] unit increase	NR [11722792] (imputed)	N
737	chr8	19939604	19939605	rs181349205	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of monounsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	8p21.3		rs181349205-G	0.992794	8E-21		0.225328	[0.18-0.27] unit decrease	NR [11722792] (imputed)	N
737	chr8	19939604	19939605	rs181349205	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	8p21.3		rs181349205-G	0.992787	1E-15		0.191823	[0.14-0.24] unit increase	NR [11722792] (imputed)	N
737	chr8	19939604	19939605	rs181349205	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	8p21.3		rs181349205-G	0.992787	1E-8		0.137801	[0.091-0.185] unit increase	NR [11722792] (imputed)	N
737	chr8	19939604	19939605	rs181349205	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	8p21.3		rs181349205-G	0.992787	5E-16		0.19353	[0.15-0.24] unit decrease	NR [11722792] (imputed)	N
737	chr8	19939604	19939605	rs181349205	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	8p21.3		rs181349205-G	0.992787	5E-15		0.190597	[0.14-0.24] unit decrease	NR [11722792] (imputed)	N
737	chr8	19939604	19939605	rs181349205	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in IDL	115,082 European ancestry individuals	NA	8p21.3		rs181349205-G	0.992787	5E-15		0.197253	[0.15-0.25] unit decrease	NR [11722792] (imputed)	N
737	chr8	19939604	19939605	rs181349205	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large VLDL	115,082 European ancestry individuals	NA	8p21.3		rs181349205-G	0.992787	4E-17		0.203235	[0.16-0.25] unit decrease	NR [11722792] (imputed)	N
737	chr8	19939604	19939605	rs181349205	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large HDL	115,082 European ancestry individuals	NA	8p21.3		rs181349205-G	0.992787	2E-8		0.126503	[0.082-0.171] unit increase	NR [11722792] (imputed)	N
737	chr8	19939604	19939605	rs181349205	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large VLDL	115,082 European ancestry individuals	NA	8p21.3		rs181349205-G	0.992787	3E-18		0.21036	[0.16-0.26] unit decrease	NR [11722792] (imputed)	N
737	chr8	19939604	19939605	rs181349205	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large HDL	115,082 European ancestry individuals	NA	8p21.3		rs181349205-G	0.992787	3E-19		0.198036	[0.15-0.24] unit increase	NR [11722792] (imputed)	N
737	chr8	19939604	19939605	rs181349205	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	8p21.3		rs181349205-G	0.992787	1E-15		0.19205	[0.14-0.24] unit decrease	NR [11722792] (imputed)	N
737	chr8	19939604	19939605	rs181349205	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Monounsaturated fatty acid levels	115,006 European ancestry individuals	NA	8p21.3		rs181349205-G	0.992794	2E-8		0.139086	[0.091-0.188] unit decrease	NR [11722792] (imputed)	N
737	chr8	19939604	19939605	rs181349205	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	HDL cholesterol levels	115,082 European ancestry individuals	NA	8p21.3		rs181349205-G	0.992787	1E-25		0.234574	[0.19-0.28] unit increase	NR [11722792] (imputed)	N
737	chr8	19939604	19939605	rs181349205	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	8p21.3		rs181349205-G	0.99279	1E-9		0.135893	[0.092-0.18] unit decrease	NR [11722792] (imputed)	N
737	chr8	19939604	19939605	rs181349205	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	8p21.3		rs181349205-G	0.992787	3E-16		0.194977	[0.15-0.24] unit increase	NR [11722792] (imputed)	N
737	chr8	19939604	19939605	rs181349205	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	8p21.3		rs181349205-G	0.992787	5E-14		0.181964	[0.13-0.23] unit increase	NR [11722792] (imputed)	N
737	chr8	19939604	19939605	rs181349205	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	8p21.3		rs181349205-G	0.992787	4E-12		0.165944	[0.12-0.21] unit increase	NR [11722792] (imputed)	N
737	chr8	19939604	19939605	rs181349205	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	8p21.3		rs181349205-G	0.992787	3E-18		0.208232	[0.16-0.26] unit increase	NR [11722792] (imputed)	N
737	chr8	19939604	19939605	rs181349205	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	8p21.3		rs181349205-G	0.992787	3E-17		0.188519	[0.14-0.23] unit increase	NR [11722792] (imputed)	N
737	chr8	19939604	19939605	rs181349205	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	8p21.3		rs181349205-G	0.992787	1E-21		0.227931	[0.18-0.27] unit increase	NR [11722792] (imputed)	N
737	chr8	19939604	19939605	rs181349205	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	8p21.3		rs181349205-G	0.992787	1E-9		0.151243	[0.1-0.2] unit increase	NR [11722792] (imputed)	N
737	chr8	19939604	19939605	rs181349205	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	8p21.3		rs181349205-G	0.992787	2E-16		0.199142	[0.15-0.25] unit decrease	NR [11722792] (imputed)	N
737	chr8	19939604	19939605	rs181349205	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	8p21.3		rs181349205-G	0.992787	4E-17		0.20372	[0.16-0.25] unit decrease	NR [11722792] (imputed)	N
737	chr8	19939604	19939605	rs181349205	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	8p21.3		rs181349205-G	0.992787	7E-17		0.183933	[0.14-0.23] unit increase	NR [11722792] (imputed)	N
737	chr8	19939604	19939605	rs181349205	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	8p21.3		rs181349205-G	0.992787	6E-15		0.188209	[0.14-0.24] unit decrease	NR [11722792] (imputed)	N
737	chr8	19939604	19939605	rs181349205	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Degree of unsaturation	115,006 European ancestry individuals	NA	8p21.3		rs181349205-G	0.992794	2E-10		0.151721	[0.1-0.2] unit increase	NR [11722792] (imputed)	N
737	chr8	19939604	19939605	rs181349205	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large VLDL particles	115,082 European ancestry individuals	NA	8p21.3		rs181349205-G	0.992787	6E-18		0.208108	[0.16-0.26] unit decrease	NR [11722792] (imputed)	N
737	chr8	19939604	19939605	rs181349205	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large VLDL particles	115,082 European ancestry individuals	NA	8p21.3		rs181349205-G	0.992787	1E-17		0.207443	[0.16-0.25] unit decrease	NR [11722792] (imputed)	N
737	chr8	19939604	19939605	rs181349205	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	8p21.3		rs181349205-G	0.992787	3E-17		0.186298	[0.14-0.23] unit increase	NR [11722792] (imputed)	N
737	chr8	19939604	19939605	rs181349205	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of chylomicrons and extremely large VLDL particles	115,082 European ancestry individuals	NA	8p21.3		rs181349205-G	0.992787	1E-15		0.193103	[0.15-0.24] unit decrease	NR [11722792] (imputed)	N
737	chr8	19939604	19939605	rs181349205	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	8p21.3		rs181349205-G	0.992787	4E-22		0.227383	[0.18-0.27] unit increase	NR [11722792] (imputed)	N
737	chr8	19939604	19939605	rs181349205	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	8p21.3		rs181349205-G	0.992751	3E-12		0.16713	[0.12-0.21] unit increase	NR [11722792] (imputed)	N
737	chr8	19939604	19939605	rs181349205	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	8p21.3		rs181349205-G	0.992787	9E-17		0.195604	[0.15-0.24] unit increase	NR [11722792] (imputed)	N
737	chr8	19939604	19939605	rs181349205	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	8p21.3		rs181349205-G	0.992787	5E-18		0.209913	[0.16-0.26] unit increase	NR [11722792] (imputed)	N
737	chr8	19939604	19939605	rs181349205	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in IDL	115,082 European ancestry individuals	NA	8p21.3		rs181349205-G	0.992787	6E-20		0.223398	[0.18-0.27] unit increase	NR [11722792] (imputed)	N
737	chr8	19939604	19939605	rs181349205	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	8p21.3		rs181349205-G	0.992787	1E-10		0.145226	[0.1-0.19] unit increase	NR [11722792] (imputed)	N
737	chr8	19939604	19939605	rs181349205	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	8p21.3		rs181349205-G	0.992787	3E-20		0.204807	[0.16-0.25] unit increase	NR [11722792] (imputed)	N
737	chr8	19939604	19939605	rs181349205	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	8p21.3		rs181349205-G	0.992787	2E-15		0.192027	[0.14-0.24] unit decrease	NR [11722792] (imputed)	N
737	chr8	19939604	19939605	rs181349205	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	8p21.3		rs181349205-G	0.992787	5E-27		0.242856	[0.2-0.29] unit increase	NR [11722792] (imputed)	N
737	chr8	19939604	19939605	rs181349205	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	8p21.3		rs181349205-G	0.992787	8E-21		0.221762	[0.18-0.27] unit increase	NR [11722792] (imputed)	N
737	chr8	19939604	19939605	rs181349205	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	8p21.3		rs181349205-G	0.992751	3E-11		0.159616	[0.11-0.21] unit increase	NR [11722792] (imputed)	N
737	chr8	19939604	19939605	rs181349205	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	8p21.3		rs181349205-G	0.992787	1E-9		0.14868	[0.1-0.2] unit increase	NR [11722792] (imputed)	N
737	chr8	19939604	19939605	rs181349205	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	8p21.3		rs181349205-G	0.992787	1E-15		0.189574	[0.14-0.24] unit increase	NR [11722792] (imputed)	N
737	chr8	19939604	19939605	rs181349205	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	8p21.3		rs181349205-G	0.992787	2E-21		0.227193	[0.18-0.27] unit increase	NR [11722792] (imputed)	N
737	chr8	19939604	19939605	rs181349205	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	8p21.3		rs181349205-G	0.992787	9E-23		0.23944	[0.19-0.29] unit increase	NR [11722792] (imputed)	N
737	chr8	19939604	19939605	rs181349205	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	8p21.3		rs181349205-G	0.992787	1E-14		0.189362	[0.14-0.24] unit decrease	NR [11722792] (imputed)	N
737	chr8	19939604	19939605	rs181349205	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	8p21.3		rs181349205-G	0.992787	2E-9		0.136841	[0.092-0.181] unit increase	NR [11722792] (imputed)	N
737	chr8	19939604	19939605	rs181349205	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	8p21.3		rs181349205-G	0.992787	7E-15		0.190866	[0.14-0.24] unit decrease	NR [11722792] (imputed)	N
737	chr8	19939604	19939605	rs181349205	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	8p21.3		rs181349205-G	0.992787	1E-19		0.200686	[0.16-0.24] unit increase	NR [11722792] (imputed)	N
737	chr8	19939604	19939605	rs181349205	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	8p21.3		rs181349205-G	0.992787	3E-15		0.19081	[0.14-0.24] unit decrease	NR [11722792] (imputed)	N
737	chr8	19939604	19939605	rs181349205	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for VLDL particles	115,082 European ancestry individuals	NA	8p21.3		rs181349205-G	0.992787	5E-18		0.202424	[0.16-0.25] unit decrease	NR [11722792] (imputed)	N
737	chr8	19939604	19939605	rs181349205	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	8p21.3		rs181349205-G	0.992787	8E-14		0.16648	[0.12-0.21] unit increase	NR [11722792] (imputed)	N
737	chr8	19939947	19939947	rs150600356	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	8p21.3	AC100802.3	rs150600356-CTT	0.588121	2E-17		0.019709552	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
737	chr8	19940057	19940058	rs13273454	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	8p21.3	AC100802.3	rs13273454-T	0.469871	4E-9		0.01345133	[0.009-0.0179] unit increase	Affymetrix [93095623] (imputed)	N
737	chr8	19940699	19940700	rs79416478	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	8p21.3	NR	rs79416478-T	NR	1E-16		0.0409	[0.031-0.051] unit increase	Affymetrix [9000000] (imputed)	N
737	chr8	19940699	19940700	rs79416478	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	8p21.3	NR	rs79416478-T	NR	1E-11		0.0352	[0.025-0.045] unit decrease	Affymetrix [9000000] (imputed)	N
737	chr8	19940795	19940796	rs11204085	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	8p21.3	intergenic	rs11204085-T	0.5802	5E-14		0.0432	[0.032-0.054] unit increase	NR [8041861] (imputed)	N
737	chr8	19941077	19941078	rs117174179	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	8p21.3		rs117174179-G	0.98056	1E-11		0.0980644	[0.07-0.127] unit decrease	NR [11722792] (imputed)	N
737	chr8	19941077	19941078	rs117174179	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	8p21.3		rs117174179-G	0.98056	1E-12		0.101105	[0.073-0.129] unit decrease	NR [11722792] (imputed)	N
737	chr8	19941077	19941078	rs117174179	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	8p21.3		rs117174179-G	0.98056	2E-13		0.108385	[0.079-0.137] unit decrease	NR [11722792] (imputed)	N
737	chr8	19941077	19941078	rs117174179	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	8p21.3		rs117174179-G	0.98056	1E-16		0.119053	[0.091-0.147] unit increase	NR [11722792] (imputed)	N
737	chr8	19941077	19941078	rs117174179	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	8p21.3		rs117174179-G	0.98056	6E-10		0.0887949	[0.061-0.117] unit increase	NR [11722792] (imputed)	N
737	chr8	19941077	19941078	rs117174179	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	8p21.3		rs117174179-G	0.98056	3E-9		0.0866994	[0.058-0.115] unit increase	NR [11722792] (imputed)	N
737	chr8	19941196	19941197	rs147649176	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	8p21.3		rs147649176-C	0.984873	5E-9		0.0969221	[0.065-0.129] unit decrease	NR [11722792] (imputed)	N
737	chr8	19941196	19941197	rs147649176	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	8p21.3		rs147649176-C	0.984873	2E-14		0.123956	[0.092-0.156] unit decrease	NR [11722792] (imputed)	N
737	chr8	19941196	19941197	rs147649176	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	8p21.3		rs147649176-C	0.984873	3E-14		0.124338	[0.092-0.156] unit decrease	NR [11722792] (imputed)	N
737	chr8	19941196	19941197	rs147649176	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	8p21.3		rs147649176-C	0.984873	5E-14		0.121542	[0.09-0.153] unit decrease	NR [11722792] (imputed)	N
737	chr8	19941196	19941197	rs147649176	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	8p21.3		rs147649176-C	0.984873	3E-8		0.0908521	[0.059-0.123] unit decrease	NR [11722792] (imputed)	N
737	chr8	19941196	19941197	rs147649176	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small VLDL	115,082 European ancestry individuals	NA	8p21.3		rs147649176-C	0.984873	7E-12		0.113554	[0.081-0.146] unit decrease	NR [11722792] (imputed)	N
737	chr8	19941196	19941197	rs147649176	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small HDL	115,082 European ancestry individuals	NA	8p21.3		rs147649176-C	0.984873	4E-11		0.109209	[0.077-0.142] unit decrease	NR [11722792] (imputed)	N
737	chr8	19941196	19941197	rs147649176	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	8p21.3		rs147649176-C	0.984873	2E-8		0.0938672	[0.061-0.126] unit decrease	NR [11722792] (imputed)	N
737	chr8	19941196	19941197	rs147649176	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	8p21.3		rs147649176-C	0.984873	9E-10		0.101253	[0.069-0.134] unit decrease	NR [11722792] (imputed)	N
737	chr8	19941196	19941197	rs147649176	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	8p21.3		rs147649176-C	0.984868	1E-13		0.11813	[0.087-0.149] unit decrease	NR [11722792] (imputed)	N
737	chr8	19941196	19941197	rs147649176	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	8p21.3		rs147649176-C	0.984873	5E-8		0.0890201	[0.057-0.121] unit decrease	NR [11722792] (imputed)	N
737	chr8	19941196	19941197	rs147649176	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	8p21.3		rs147649176-C	0.984876	3E-8		0.0927612	[0.06-0.125] unit decrease	NR [11722792] (imputed)	N
737	chr8	19941196	19941197	rs147649176	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	8p21.3		rs147649176-C	0.984873	3E-11		0.109279	[0.077-0.142] unit decrease	NR [11722792] (imputed)	N
737	chr8	19941196	19941197	rs147649176	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	8p21.3		rs147649176-C	0.984873	2E-11		0.110809	[0.078-0.143] unit increase	NR [11722792] (imputed)	N
737	chr8	19941196	19941197	rs147649176	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	8p21.3		rs147649176-C	0.984873	8E-12		0.111723	[0.08-0.144] unit increase	NR [11722792] (imputed)	N
737	chr8	19941196	19941197	rs147649176	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	8p21.3		rs147649176-C	0.984873	8E-11		0.107352	[0.075-0.14] unit decrease	NR [11722792] (imputed)	N
737	chr8	19941196	19941197	rs147649176	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of chylomicrons and extremely large VLDL particles	115,082 European ancestry individuals	NA	8p21.3		rs147649176-C	0.984873	1E-10		0.106691	[0.074-0.139] unit decrease	NR [11722792] (imputed)	N
737	chr8	19941196	19941197	rs147649176	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	8p21.3		rs147649176-C	0.984873	1E-8		0.0913358	[0.06-0.123] unit increase	NR [11722792] (imputed)	N
737	chr8	19941196	19941197	rs147649176	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	8p21.3		rs147649176-C	0.984873	3E-12		0.116041	[0.084-0.149] unit increase	NR [11722792] (imputed)	N
737	chr8	19941196	19941197	rs147649176	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large VLDL	115,082 European ancestry individuals	NA	8p21.3		rs147649176-C	0.984873	1E-9		0.103598	[0.07-0.137] unit decrease	NR [11722792] (imputed)	N
737	chr8	19941196	19941197	rs147649176	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	8p21.3		rs147649176-C	0.984873	4E-11		0.109526	[0.077-0.142] unit decrease	NR [11722792] (imputed)	N
737	chr8	19941196	19941197	rs147649176	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	8p21.3		rs147649176-C	0.984873	3E-8		0.0852957	[0.055-0.116] unit increase	NR [11722792] (imputed)	N
737	chr8	19941196	19941197	rs147649176	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	8p21.3		rs147649176-C	0.984873	5E-8		0.0884489	[0.057-0.12] unit increase	NR [11722792] (imputed)	N
737	chr8	19941196	19941197	rs147649176	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	8p21.3		rs147649176-C	0.984873	1E-12		0.116004	[0.084-0.148] unit increase	NR [11722792] (imputed)	N
737	chr8	19941196	19941197	rs147649176	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	8p21.3		rs147649176-C	0.984873	4E-11		0.109205	[0.077-0.142] unit decrease	NR [11722792] (imputed)	N
737	chr8	19941655	19941656	rs75662196	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	8p21.3		rs75662196-G	0.972162	1E-8		0.0693135	[0.046-0.093] unit increase	NR [11722792] (imputed)	N
737	chr8	19941655	19941656	rs75662196	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	8p21.3		rs75662196-G	0.972162	3E-8		0.068495	[0.044-0.093] unit increase	NR [11722792] (imputed)	N
737	chr8	19941655	19941656	rs75662196	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	8p21.3		rs75662196-G	0.972162	2E-10		0.077592	[0.054-0.101] unit increase	NR [11722792] (imputed)	N
737	chr8	19941655	19941656	rs75662196	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	8p21.3		rs75662196-G	0.972162	3E-9		0.0723632	[0.048-0.096] unit increase	NR [11722792] (imputed)	N
737	chr8	19941655	19941656	rs75662196	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	8p21.3		rs75662196-G	0.972162	1E-8		0.071009	[0.047-0.095] unit increase	NR [11722792] (imputed)	N
737	chr8	19941655	19941656	rs75662196	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	8p21.3		rs75662196-G	0.972162	4E-10		0.0769052	[0.053-0.101] unit increase	NR [11722792] (imputed)	N
737	chr8	19941655	19941656	rs75662196	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	8p21.3		rs75662196-G	0.972157	7E-9		0.0688912	[0.046-0.092] unit increase	NR [11722792] (imputed)	N
737	chr8	19941655	19941656	rs75662196	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	8p21.3		rs75662196-G	0.972162	2E-8		0.0684968	[0.045-0.092] unit decrease	NR [11722792] (imputed)	N
737	chr8	19941655	19941656	rs75662196	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	8p21.3		rs75662196-G	0.972162	2E-9		0.0731114	[0.049-0.097] unit increase	NR [11722792] (imputed)	N
737	chr8	19941655	19941656	rs75662196	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	HDL cholesterol levels	115,082 European ancestry individuals	NA	8p21.3		rs75662196-G	0.972162	1E-10		0.0735076	[0.051-0.096] unit decrease	NR [11722792] (imputed)	N
737	chr8	19941655	19941656	rs75662196	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	8p21.3		rs75662196-G	0.972162	5E-9		0.0712773	[0.047-0.095] unit decrease	NR [11722792] (imputed)	N
737	chr8	19941655	19941656	rs75662196	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	8p21.3		rs75662196-G	0.972162	2E-8		0.0691478	[0.045-0.093] unit decrease	NR [11722792] (imputed)	N
737	chr8	19941655	19941656	rs75662196	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	8p21.3		rs75662196-G	0.972162	1E-9		0.0693012	[0.047-0.092] unit decrease	NR [11722792] (imputed)	N
737	chr8	19941655	19941656	rs75662196	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	8p21.3		rs75662196-G	0.972162	1E-9		0.0739797	[0.05-0.098] unit decrease	NR [11722792] (imputed)	N
737	chr8	19941655	19941656	rs75662196	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	8p21.3		rs75662196-G	0.972162	6E-11		0.0784895	[0.055-0.102] unit decrease	NR [11722792] (imputed)	N
737	chr8	19941655	19941656	rs75662196	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	8p21.3		rs75662196-G	0.972162	2E-8		0.0690387	[0.045-0.093] unit decrease	NR [11722792] (imputed)	N
737	chr8	19941655	19941656	rs75662196	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	8p21.3		rs75662196-G	0.972162	7E-11		0.0749904	[0.052-0.098] unit decrease	NR [11722792] (imputed)	N
737	chr8	19941655	19941656	rs75662196	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	8p21.3		rs75662196-G	0.972162	2E-10		0.0770738	[0.053-0.101] unit decrease	NR [11722792] (imputed)	N
737	chr8	19941655	19941656	rs75662196	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	8p21.3		rs75662196-G	0.972162	5E-10		0.075604	[0.052-0.099] unit decrease	NR [11722792] (imputed)	N
737	chr8	19941655	19941656	rs75662196	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	8p21.3		rs75662196-G	0.972162	8E-9		0.0718663	[0.047-0.096] unit decrease	NR [11722792] (imputed)	N
737	chr8	19941655	19941656	rs75662196	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	8p21.3		rs75662196-G	0.972162	9E-10		0.0763121	[0.052-0.101] unit decrease	NR [11722792] (imputed)	N
737	chr8	19941655	19941656	rs75662196	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	8p21.3	SLC18A1	rs75662196-G	0.97206	9E-31		0.067763	[0.056-0.079] unit decrease	Affymetrix [NR] (imputed)	N
737	chr8	19942180	19942181	rs13263508	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x long total sleep time interaction (2df test)	2,933 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, up to 7,870 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,975 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 32,171 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 616 East Asian ancestry long sleepers, up to 9,486 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 929 African American controls, 2,517 East Asian ancestry controls, up to 38,126 European ancestry controls, 10,063 Hispanic controls	8p21.3	LPL	rs13263508-?	NR	5E-36		0.01203	[0.01-0.014] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
737	chr8	19942180	19942181	rs13263508	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Triglyceride levels	105,597 Japanese ancestry individuals	NA	8p21.3	NR	rs13263508-?	NR	7E-14	(conditional on round 2)	0.04456776	[0.033-0.056] unit decrease novel	Illumina [6108953] (imputed)	N
737	chr8	19942180	19942181	rs13263508	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	High density lipoprotein cholesterol levels	70,657 Japanese ancestry individuals	NA	8p21.3	NR	rs13263508-?	NR	9E-7		0.03603	[0.022-0.05] unit increase novel	Illumina [6108953] (imputed)	N
737	chr8	19942515	19942516	rs35946942	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	8p21.3	NR	rs35946942-C	NR	3E-17		0.0357	[0.027-0.044] unit increase	Affymetrix [9000000] (imputed)	N
737	chr8	19942515	19942516	rs35946942	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	8p21.3	NR	rs35946942-C	NR	2E-12		0.0297	[0.021-0.038] unit increase	Affymetrix [9000000] (imputed)	N
737	chr8	19948232	19948233	rs62498187	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	8p21.3	SLC18A1	rs62498187-A	0.0114143402807246	7E-6	(C_Deltaproteobacteria_HB)	1.55657	[0.88-2.23] unit decrease	Illumina [7711310] (imputed)	N
737	chr8	19949197	19949198	rs77913157	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	8p21.3	NR	rs77913157-T	NR	1E-12		0.0373	[0.027-0.048] unit increase	Affymetrix [9000000] (imputed)	N
737	chr8	19949197	19949198	rs77913157	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	8p21.3	NR	rs77913157-T	NR	1E-12		0.0393	[0.029-0.05] unit decrease	Affymetrix [9000000] (imputed)	N
737	chr8	19949197	19949198	rs77913157	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	8p21.3	NR	rs77913157-?	NR	6E-7		0.352	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
737	chr8	19951751	19951752	rs73600289	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of linoleic acid to total fatty acids	115,006 European ancestry individuals	NA	8p21.3		rs73600289-T	0.966979	1E-8		0.0642961	[0.042-0.086] unit increase	NR [11722792] (imputed)	N
737	chr8	19951751	19951752	rs73600289	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	8p21.3		rs73600289-T	0.96698	6E-9		0.0658051	[0.044-0.088] unit increase	NR [11722792] (imputed)	N
737	chr8	19955812	19955813	rs10888177	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x short total sleep time interaction (2df test)	3,007 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,474 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, up to 11,901 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,567 European ancestry controls, 4,047 Hispanic/Latino controls	up to 221 African American short sleepers, 629 East Asian ancestry short sleepers, up to 9,585 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 2,504 East Asian ancestry controls, up to 38,027 European ancestry controls, 10,061 Hispanic controls	8p21.3	LPL	rs10888177-?	NR	2E-10		0.004577	[0.0026-0.0066] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
737	chr8	19956345	19956346	rs28742908	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	8p21.3	NR	rs28742908-A	NR	6E-27		0.0263	[0.022-0.031] unit decrease	Affymetrix [9000000] (imputed)	N
737	chr8	19956345	19956346	rs28742908	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	8p21.3	NR	rs28742908-A	NR	1E-40		0.0342	[0.029-0.039] unit increase	Affymetrix [9000000] (imputed)	N
737	chr8	19956345	19956346	rs28742908	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	8p21.3	NR	rs28742908-A	NR	2E-28		0.0284	[0.023-0.033] unit increase	Affymetrix [9000000] (imputed)	N
737	chr8	19960860	19960861	rs13270882	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	8p21.3	NR	rs13270882-T	NR	8E-11		0.0398	[0.028-0.052] unit decrease	Affymetrix [9000000] (imputed)	N
737	chr8	19961273	19961274	rs17092008	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in IDL	115,082 European ancestry individuals	NA	8p21.3		rs17092008-C	0.936816	3E-8		0.0461214	[0.03-0.062] unit increase	NR [11722792] (imputed)	N
737	chr8	19961273	19961274	rs17092008	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	8p21.3		rs17092008-C	0.936816	1E-8		0.0472738	[0.031-0.064] unit increase	NR [11722792] (imputed)	N
737	chr8	19962275	19962276	rs117535105	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	8p21.3		rs117535105-C	0.944388	6E-10		0.0542824	[0.037-0.071] unit increase	NR [11722792] (imputed)	N
737	chr8	19962275	19962276	rs117535105	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	8p21.3		rs117535105-C	0.944388	7E-9		0.0506865	[0.034-0.068] unit increase	NR [11722792] (imputed)	N
737	chr8	19968928	19968929	rs16842	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	8p21.3		rs16842-T	0.714188	5E-11		0.0293941	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
737	chr8	19969741	19969742	rs146449080	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	8p21.3		rs146449080-A	0.984306	2E-11		0.105466	[0.075-0.136] unit decrease	NR [11722792] (imputed)	N
737	chr8	19969741	19969742	rs146449080	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very small VLDL	115,082 European ancestry individuals	NA	8p21.3		rs146449080-A	0.98431	6E-11		0.107114	[0.075-0.139] unit decrease	NR [11722792] (imputed)	N
737	chr8	19969741	19969742	rs146449080	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large VLDL	115,082 European ancestry individuals	NA	8p21.3		rs146449080-A	0.98431	1E-10		0.103042	[0.072-0.135] unit decrease	NR [11722792] (imputed)	N
737	chr8	19969741	19969742	rs146449080	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small LDL	115,082 European ancestry individuals	NA	8p21.3		rs146449080-A	0.98431	3E-11		0.108272	[0.076-0.14] unit decrease	NR [11722792] (imputed)	N
737	chr8	19969741	19969742	rs146449080	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium VLDL	115,082 European ancestry individuals	NA	8p21.3		rs146449080-A	0.98431	3E-10		0.102846	[0.071-0.135] unit decrease	NR [11722792] (imputed)	N
737	chr8	19969741	19969742	rs146449080	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium LDL	115,082 European ancestry individuals	NA	8p21.3		rs146449080-A	0.98431	1E-9		0.100327	[0.068-0.133] unit decrease	NR [11722792] (imputed)	N
737	chr8	19969741	19969742	rs146449080	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large VLDL	115,082 European ancestry individuals	NA	8p21.3		rs146449080-A	0.98431	8E-10		0.0993946	[0.068-0.131] unit decrease	NR [11722792] (imputed)	N
737	chr8	19969741	19969742	rs146449080	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in VLDL	115,082 European ancestry individuals	NA	8p21.3		rs146449080-A	0.98431	5E-11		0.105933	[0.074-0.138] unit decrease	NR [11722792] (imputed)	N
737	chr8	19969741	19969742	rs146449080	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in LDL	115,082 European ancestry individuals	NA	8p21.3		rs146449080-A	0.98431	4E-9		0.0970114	[0.065-0.129] unit decrease	NR [11722792] (imputed)	N
737	chr8	19969741	19969742	rs146449080	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in IDL	115,082 European ancestry individuals	NA	8p21.3		rs146449080-A	0.98431	6E-9		0.0955077	[0.063-0.128] unit decrease	NR [11722792] (imputed)	N
737	chr8	19969741	19969742	rs146449080	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total triglycerides levels	115,082 European ancestry individuals	NA	8p21.3		rs146449080-A	0.98431	2E-11		0.10914	[0.077-0.141] unit decrease	NR [11722792] (imputed)	N
737	chr8	19969741	19969742	rs146449080	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large VLDL	115,082 European ancestry individuals	NA	8p21.3		rs146449080-A	0.98431	6E-11		0.105706	[0.074-0.137] unit decrease	NR [11722792] (imputed)	N
737	chr8	19969741	19969742	rs146449080	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small VLDL	115,082 European ancestry individuals	NA	8p21.3		rs146449080-A	0.98431	2E-9		0.100345	[0.068-0.133] unit decrease	NR [11722792] (imputed)	N
737	chr8	19969741	19969742	rs146449080	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large VLDL	115,082 European ancestry individuals	NA	8p21.3		rs146449080-A	0.98431	9E-11		0.105364	[0.074-0.137] unit decrease	NR [11722792] (imputed)	N
737	chr8	19969741	19969742	rs146449080	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in VLDL	115,082 European ancestry individuals	NA	8p21.3		rs146449080-A	0.98431	2E-10		0.10493	[0.073-0.137] unit decrease	NR [11722792] (imputed)	N
737	chr8	19969741	19969742	rs146449080	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	8p21.3		rs146449080-A	0.984304	4E-9		0.095209	[0.064-0.127] unit increase	NR [11722792] (imputed)	N
737	chr8	19969741	19969742	rs146449080	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to monounsaturated fatty acids	115,006 European ancestry individuals	NA	8p21.3		rs146449080-A	0.984304	4E-11		0.106515	[0.075-0.138] unit increase	NR [11722792] (imputed)	N
737	chr8	19969741	19969742	rs146449080	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	8p21.3		rs146449080-A	0.984304	1E-8		0.0926055	[0.061-0.124] unit increase	NR [11722792] (imputed)	N
737	chr8	19969741	19969742	rs146449080	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of monounsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	8p21.3		rs146449080-A	0.984304	1E-11		0.109501	[0.078-0.141] unit decrease	NR [11722792] (imputed)	N
737	chr8	19969741	19969742	rs146449080	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large VLDL	115,082 European ancestry individuals	NA	8p21.3		rs146449080-A	0.98431	2E-11		0.108431	[0.077-0.14] unit decrease	NR [11722792] (imputed)	N
737	chr8	19969741	19969742	rs146449080	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large VLDL	115,082 European ancestry individuals	NA	8p21.3		rs146449080-A	0.98431	2E-11		0.109342	[0.078-0.141] unit decrease	NR [11722792] (imputed)	N
737	chr8	19969741	19969742	rs146449080	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in VLDL	115,082 European ancestry individuals	NA	8p21.3		rs146449080-A	0.98431	6E-10		0.102838	[0.07-0.135] unit decrease	NR [11722792] (imputed)	N
737	chr8	19969741	19969742	rs146449080	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Monounsaturated fatty acid levels	115,006 European ancestry individuals	NA	8p21.3		rs146449080-A	0.984304	7E-9		0.0959376	[0.063-0.128] unit decrease	NR [11722792] (imputed)	N
737	chr8	19969741	19969742	rs146449080	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	8p21.3		rs146449080-A	0.98431	3E-9		0.0945218	[0.063-0.126] unit increase	NR [11722792] (imputed)	N
737	chr8	19969741	19969742	rs146449080	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	8p21.3		rs146449080-A	0.98431	3E-11		0.108253	[0.076-0.14] unit decrease	NR [11722792] (imputed)	N
737	chr8	19969741	19969742	rs146449080	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	8p21.3		rs146449080-A	0.98431	5E-11		0.106818	[0.075-0.139] unit decrease	NR [11722792] (imputed)	N
737	chr8	19969741	19969742	rs146449080	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in VLDL	115,082 European ancestry individuals	NA	8p21.3		rs146449080-A	0.98431	1E-8		0.0957206	[0.063-0.128] unit decrease	NR [11722792] (imputed)	N
737	chr8	19969741	19969742	rs146449080	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large VLDL particles	115,082 European ancestry individuals	NA	8p21.3		rs146449080-A	0.98431	3E-11		0.107292	[0.076-0.139] unit decrease	NR [11722792] (imputed)	N
737	chr8	19969741	19969742	rs146449080	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small VLDL particles	115,082 European ancestry individuals	NA	8p21.3		rs146449080-A	0.98431	4E-10		0.103835	[0.071-0.136] unit decrease	NR [11722792] (imputed)	N
737	chr8	19969741	19969742	rs146449080	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large VLDL particles	115,082 European ancestry individuals	NA	8p21.3		rs146449080-A	0.98431	4E-11		0.10712	[0.075-0.139] unit decrease	NR [11722792] (imputed)	N
737	chr8	19969741	19969742	rs146449080	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of VLDL particles	115,082 European ancestry individuals	NA	8p21.3		rs146449080-A	0.98431	1E-8		0.0947748	[0.062-0.127] unit decrease	NR [11722792] (imputed)	N
737	chr8	19969741	19969742	rs146449080	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large VLDL	115,082 European ancestry individuals	NA	8p21.3		rs146449080-A	0.98431	2E-9		0.100062	[0.068-0.133] unit decrease	NR [11722792] (imputed)	N
737	chr8	19969741	19969742	rs146449080	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	8p21.3		rs146449080-A	0.98431	2E-8		0.0833208	[0.054-0.112] unit increase	NR [11722792] (imputed)	N
737	chr8	19969741	19969742	rs146449080	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	8p21.3		rs146449080-A	0.98431	2E-10		0.105019	[0.073-0.137] unit decrease	NR [11722792] (imputed)	N
737	chr8	19969741	19969742	rs146449080	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	8p21.3		rs146449080-A	0.98431	1E-10		0.10542	[0.073-0.138] unit decrease	NR [11722792] (imputed)	N
737	chr8	19969741	19969742	rs146449080	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	8p21.3		rs146449080-A	0.98431	5E-8		0.0808559	[0.052-0.11] unit increase	NR [11722792] (imputed)	N
737	chr8	19969741	19969742	rs146449080	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for VLDL particles	115,082 European ancestry individuals	NA	8p21.3		rs146449080-A	0.98431	2E-9		0.0938477	[0.063-0.125] unit decrease	NR [11722792] (imputed)	N
737	chr8	19972139	19972140	rs150564454	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	8p21.3	SLC18A1	rs150564454-G	0.988444	5E-26		0.101886	[0.083-0.121] unit increase	Affymetrix [NR] (imputed)	N
737	chr8	19974788	19974789	rs74737417	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	8p21.3	NR	rs74737417-G	NR	7E-88		0.0985	[0.089-0.108] unit decrease	Affymetrix [9000000] (imputed)	N
737	chr8	19974788	19974789	rs74737417	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	8p21.3	NR	rs74737417-G	NR	1E-58		0.0836	[0.073-0.094] unit increase	Affymetrix [9000000] (imputed)	N
737	chr8	19974788	19974789	rs74737417	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	8p21.3	NR	rs74737417-G	NR	2E-9		0.0297	[0.02-0.039] unit decrease	Affymetrix [9000000] (imputed)	N
737	chr8	19974788	19974789	rs74737417	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	8p21.3	NR	rs74737417-G	NR	1E-27		0.0567	[0.047-0.067] unit increase	Affymetrix [9000000] (imputed)	N
737	chr8	19977042	19977043	rs17411601	33382417	Batai K	2020-12-31	J Nutr	Genome-Wide Association Study of Response to Selenium Supplementation and Circulating Selenium Concentrations in Adults of European Descent.	Response to selenium supplementation (change in plasma selenium concentration)	428 European ancestry individuals	NA	8p21.3	SLC18A1	rs17411601-?	0.389	8E-6		11.95	[6.77-17.13] unit increase	Illumina [7663546] (imputed)	N
737	chr8	19977310	19977311	rs55682243	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	8p21.3		rs55682243-C	0.97603	2E-9		0.0762702	[0.051-0.101] unit increase	NR [11722792] (imputed)	N
737	chr8	19977310	19977311	rs55682243	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	8p21.3		rs55682243-C	0.97603	4E-8		0.0710934	[0.046-0.096] unit increase	NR [11722792] (imputed)	N
737	chr8	19977310	19977311	rs55682243	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	8p21.3		rs55682243-C	0.97603	1E-9		0.0786919	[0.053-0.104] unit increase	NR [11722792] (imputed)	N
737	chr8	19977310	19977311	rs55682243	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	8p21.3		rs55682243-C	0.97603	2E-12		0.0892342	[0.064-0.114] unit increase	NR [11722792] (imputed)	N
737	chr8	19977310	19977311	rs55682243	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	8p21.3		rs55682243-C	0.97603	3E-8		0.0701409	[0.045-0.095] unit increase	NR [11722792] (imputed)	N
737	chr8	19977310	19977311	rs55682243	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	8p21.3		rs55682243-C	0.97603	2E-10		0.0810995	[0.056-0.106] unit increase	NR [11722792] (imputed)	N
737	chr8	19977310	19977311	rs55682243	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	8p21.3		rs55682243-C	0.97603	9E-9		0.0723709	[0.048-0.097] unit increase	NR [11722792] (imputed)	N
737	chr8	19977310	19977311	rs55682243	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	8p21.3		rs55682243-C	0.97603	4E-9		0.0757297	[0.051-0.101] unit increase	NR [11722792] (imputed)	N
737	chr8	19977310	19977311	rs55682243	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small VLDL	115,082 European ancestry individuals	NA	8p21.3		rs55682243-C	0.97603	4E-8		0.0709554	[0.046-0.096] unit increase	NR [11722792] (imputed)	N
737	chr8	19977310	19977311	rs55682243	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	8p21.3		rs55682243-C	0.976036	5E-12		0.0855889	[0.061-0.11] unit increase	NR [11722792] (imputed)	N
737	chr8	19977310	19977311	rs55682243	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of monounsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	8p21.3		rs55682243-C	0.976036	3E-9		0.0760735	[0.051-0.101] unit increase	NR [11722792] (imputed)	N
737	chr8	19977310	19977311	rs55682243	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	8p21.3		rs55682243-C	0.97603	8E-10		0.0785037	[0.054-0.104] unit decrease	NR [11722792] (imputed)	N
737	chr8	19977310	19977311	rs55682243	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	8p21.3		rs55682243-C	0.97603	1E-8		0.0723353	[0.047-0.097] unit increase	NR [11722792] (imputed)	N
737	chr8	19977310	19977311	rs55682243	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	8p21.3		rs55682243-C	0.97603	1E-8		0.0734432	[0.048-0.099] unit increase	NR [11722792] (imputed)	N
737	chr8	19977310	19977311	rs55682243	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	HDL cholesterol levels	115,082 European ancestry individuals	NA	8p21.3		rs55682243-C	0.97603	2E-10		0.0764959	[0.053-0.1] unit decrease	NR [11722792] (imputed)	N
737	chr8	19977310	19977311	rs55682243	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	8p21.3		rs55682243-C	0.97603	2E-10		0.0815243	[0.057-0.106] unit decrease	NR [11722792] (imputed)	N
737	chr8	19977310	19977311	rs55682243	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	8p21.3		rs55682243-C	0.97603	1E-8		0.0733215	[0.048-0.099] unit decrease	NR [11722792] (imputed)	N
737	chr8	19977310	19977311	rs55682243	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	8p21.3		rs55682243-C	0.97603	2E-9		0.0765195	[0.052-0.102] unit decrease	NR [11722792] (imputed)	N
737	chr8	19977310	19977311	rs55682243	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	8p21.3		rs55682243-C	0.97603	2E-8		0.0665578	[0.043-0.09] unit decrease	NR [11722792] (imputed)	N
737	chr8	19977310	19977311	rs55682243	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	8p21.3		rs55682243-C	0.97603	9E-11		0.0823608	[0.057-0.107] unit decrease	NR [11722792] (imputed)	N
737	chr8	19977310	19977311	rs55682243	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	8p21.3		rs55682243-C	0.97603	2E-8		0.0721047	[0.047-0.097] unit increase	NR [11722792] (imputed)	N
737	chr8	19977310	19977311	rs55682243	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of chylomicrons and extremely large VLDL particles	115,082 European ancestry individuals	NA	8p21.3		rs55682243-C	0.97603	1E-8		0.0730406	[0.048-0.098] unit increase	NR [11722792] (imputed)	N
737	chr8	19977310	19977311	rs55682243	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	8p21.3		rs55682243-C	0.97603	5E-11		0.0827037	[0.058-0.107] unit decrease	NR [11722792] (imputed)	N
737	chr8	19977310	19977311	rs55682243	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	8p21.3		rs55682243-C	0.97603	1E-9		0.0759418	[0.051-0.101] unit decrease	NR [11722792] (imputed)	N
737	chr8	19977310	19977311	rs55682243	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	8p21.3		rs55682243-C	0.97603	6E-9		0.0750616	[0.05-0.1] unit decrease	NR [11722792] (imputed)	N
737	chr8	19977310	19977311	rs55682243	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in IDL	115,082 European ancestry individuals	NA	8p21.3		rs55682243-C	0.97603	2E-8		0.073682	[0.048-0.099] unit decrease	NR [11722792] (imputed)	N
737	chr8	19977310	19977311	rs55682243	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium HDL	115,082 European ancestry individuals	NA	8p21.3		rs55682243-C	0.97603	9E-10		0.0759255	[0.052-0.1] unit decrease	NR [11722792] (imputed)	N
737	chr8	19977310	19977311	rs55682243	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	8p21.3		rs55682243-C	0.97603	5E-11		0.0790954	[0.056-0.103] unit decrease	NR [11722792] (imputed)	N
737	chr8	19977310	19977311	rs55682243	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	8p21.3		rs55682243-C	0.97603	1E-10		0.0813846	[0.057-0.106] unit decrease	NR [11722792] (imputed)	N
737	chr8	19977310	19977311	rs55682243	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	8p21.3		rs55682243-C	0.97603	6E-9		0.0732776	[0.049-0.098] unit decrease	NR [11722792] (imputed)	N
737	chr8	19977310	19977311	rs55682243	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	8p21.3		rs55682243-C	0.97603	2E-10		0.0808272	[0.056-0.106] unit decrease	NR [11722792] (imputed)	N
737	chr8	19977310	19977311	rs55682243	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	8p21.3		rs55682243-C	0.97603	7E-10		0.0802325	[0.055-0.106] unit decrease	NR [11722792] (imputed)	N
737	chr8	19977310	19977311	rs55682243	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	8p21.3		rs55682243-C	0.97603	2E-9		0.0742628	[0.05-0.098] unit decrease	NR [11722792] (imputed)	N
737	chr8	19977310	19977311	rs55682243	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for VLDL particles	115,082 European ancestry individuals	NA	8p21.3		rs55682243-C	0.97603	8E-9		0.0719845	[0.048-0.096] unit increase	NR [11722792] (imputed)	N
737	chr8	19977310	19977311	rs55682243	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	8p21.3	NR	rs55682243-G	NR	1E-31		0.0849	[0.071-0.099] unit decrease	Affymetrix [9000000] (imputed)	N
737	chr8	19977310	19977311	rs55682243	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	8p21.3	NR	rs55682243-G	NR	9E-32		0.089	[0.074-0.104] unit increase	Affymetrix [9000000] (imputed)	N
737	chr8	19977310	19977311	rs55682243	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	8p21.3	NR	rs55682243-G	NR	2E-10		0.0464	[0.032-0.061] unit decrease	Affymetrix [9000000] (imputed)	N
737	chr8	19977310	19977311	rs55682243	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	8p21.3	NR	rs55682243-G	NR	7E-19		0.0675	[0.053-0.082] unit increase	Affymetrix [9000000] (imputed)	N
737	chr8	19977310	19977311	rs55682243	32226016	Hu Y	2020-03-30	PLoS Genet	Minority-centric meta-analyses of blood lipid levels identify novel loci in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Total triglycerides levels	17,563 African American individuals, 23,077 Hispanics ancestry individuals, 2,381 East Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals, 22,898 European ancestry individuals	up to 71,987 African American individuals, up to 34,899 Hispanics ancestry individuals, up to 315,133 European ancestry individuals, up to 9,593 Asian ancestry individuals, up to 94,674 European ancestry, East Asian ancestry, African American, South Asian ancestry, Hispanic individuals	8p21.3		rs55682243-?	NR	1E-12		0.098	[0.071-0.125] mg/dL decrease	Affymetrix, Illumina [NR] (imputed)	N
737	chr8	19977310	19977311	rs55682243	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	8p21.3	AC100802.3	rs55682243-?	NR	1E-12		0.05	[0.036-0.064] unit decrease	Illumina [31978265] (imputed)	N
737	chr8	19977310	19977311	rs55682243	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	8p21.3	AC100802.3	rs55682243-?	NR	1E-10	(AA)	0.05302724	[0.037-0.069] unit decrease	Illumina [31978265] (imputed)	N
737	chr8	19987702	19987703	rs10503672	22959728	Ahmeti KB	2012-09-05	Neurobiol Aging	Age of onset of amyotrophic lateral sclerosis is modulated by a locus on 1p34.1.	Amyotrophic lateral sclerosis (age of onset)	4,243 European ancestry cases	NA	8p21.3	intergenic	rs10503672-T	0.26	3E-6	(Meta)			Illumina [254145]	N
737	chr8	19998948	19998949	rs56090699	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	8p21.3	SLC18A1	rs56090699-T	0.6987	1E-12		0.0153025	[0.011-0.02] unit decrease	Affymetrix [NR] (imputed)	N
737	chr8	20004370	20004371	rs79821925	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	8p21.3	NR	rs79821925-C	NR	5E-10		0.0788	[0.054-0.104] unit decrease	Affymetrix [9000000] (imputed)	N
737	chr8	20004370	20004371	rs79821925	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	8p21.3	NR	rs79821925-C	NR	2E-12		0.0933	[0.067-0.119] unit increase	Affymetrix [9000000] (imputed)	N
737	chr8	20004370	20004371	rs79821925	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	8p21.3	NR	rs79821925-C	NR	4E-9		0.0783	[0.052-0.104] unit increase	Affymetrix [9000000] (imputed)	N
737	chr8	20020820	20020821	rs34108083	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	8p21.3	NR	rs34108083-G	NR	3E-9		0.0238	[0.016-0.032] unit increase	Affymetrix [9000000] (imputed)	N
737	chr8	20020820	20020821	rs34108083	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	8p21.3	NR	rs34108083-G	NR	4E-9		0.0247	[0.016-0.033] unit decrease	Affymetrix [9000000] (imputed)	N
738	chr8	20056639	20056640	rs117853493	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	8p21.3	NR	rs117853493-A	NR	1E-9		0.0632	[0.043-0.083] unit increase	Affymetrix [9000000] (imputed)	N
738	chr8	20066048	20066049	rs1106634	20889312	Wang KS	2010-10-01	Schizophr Res	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	8p21.3	NR	rs1106634-?	NR	4E-6		1.344	[NR]	Affymetrix [722112]	N
738	chr8	20066048	20066049	rs1106634	20038947	Shyn SI	2009-12-29	Mol Psychiatry	Novel loci for major depression identified by genome-wide association study of Sequenced Treatment Alternatives to Relieve Depression and meta-analysis of three studies.	Major depressive disorder (broad)	3,957 European ancestry cases, 3,428 European ancestry controls	NA	8p21.3	SLC18A1, ATP6V1B2, LZTS1	rs1106634-A	0.14	7E-7		1.3	[NR]	Affymetrix, Perlegen [2391203] (imputed)	N
738	chr8	20066838	20066839	rs2291791	27005419	Borne Y	2016-03-22	Hum Mol Genet	Genome wide association study identifies two loci associated with cadmium in erythrocytes among never-smokers.	Erythrocyte cadmium concentration in never smokers	1,728 individuals	NA	8p21.3	ATP6V1B2	rs2291791-G	0.04111	7E-6		0.1858	unit increase	Illumina [658884]	N
738	chr8	20081889	20081890	rs1390943	23620142	Reiner AP	2013-04-24	Hum Mol Genet	Genome-wide and gene-centric analyses of circulating myeloperoxidase levels in the charge and care consortia.	Circulating myeloperoxidase levels (serum)	9,305 European ancestry individuals		8p21.3	ATP6V1B2, LZTS1	rs1390943-G	0.33	9E-7		0.05	[0.03-0.07] unit decrease	Affymetrix, Illumina [2397181]	N
738	chr8	20136446	20136447	rs79966256	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		LZTS1	rs79966256-?	NR	6E-9	(female)	2.1303	[NR] unit decrease	Affymetrix [NR] (imputed)	N
739	chr8	20191058	20191059	rs181608464	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	8p21.3	NR	rs181608464-?	NR	9E-6		0.78888	[0.44-1.14] unit increase	NR [13958389] (imputed)	N
739	chr8	20246757	20246758	rs17412740	23551011	Zhao L	2013-04-02	Ann Hum Genet	Genome-wide association study of pre-eclampsia detects novel maternal single nucleotide polymorphisms and copy-number variants in subsets of the Hyperglycemia and Adverse Pregnancy Outcome (HAPO) study cohort.	Preeclampsia	21 Afro-Caribbean cases, 1,010 Afro-Caribbean controls, 50 European ancestry cases, 1,202 European ancestry controls, 62 Hispanic cases, 658 Hispanic controls	NA	8p21.3	LZTS1	rs17412740-?	NR	2E-6	(Hispanic)	6.08	[2.88-12.81]	Illumina [2485249] (imputed)	N
739	chr8	20301436	20301437	rs4922199	23259602	Wang X	2012-12-21	BMC Oral Health	Genome-wide association scan of dental caries in the permanent dentition.	Dental caries	1,483 European ancestry comparatively younger individuals, 5,960 European ancestry comparatively older individuals	NA	8p21.3	LZTS1	rs4922199-?	NR	8E-6	(Comparatively Younger)			Affymetrix, Illumina [~ 1400000] (imputed)	N
740	chr8	20336572	20336573	rs10111661	23064961	Shaffer JR	2012-10-11	J Dent Res	GWAS of dental caries patterns in the permanent dentition.	Dental caries	920 European ancestry individuals	NA	8p21.3	LZTS1	rs10111661-?	NR	2E-6	(DMFS5max,DMFS5)			Illumina [518997]	N
740	chr8	20355957	20355982	rs200486033	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip	15 Asian ancestry cases, 13 European ancestry cases, 15 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	8p21.3	NR	rs200486033-?	NR	1E-6		4.31	[3.27-5.67]	Illumina [539000] (imputed)	N
740	chr8	20357196	20357197	rs73218490	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-9 levels	3,634 Finnish ancestry individuals	NA	8p21.3	NR	rs73218490-C		7E-6		0.1767	[0.099-0.254] SD units increase	NR [10700000] (imputed)	N
740	chr8	20358617	20358618	rs9785133	30891314	Saad MN	2019-01-18	J Adv Res	Studying the effects of haplotype partitioning methods on the RA-associated genomic results from the North American Rheumatoid Arthritis Consortium (NARAC) dataset.	Rheumatoid arthritis	868 European ancestry cases, 1,194 European ancestry controls	NA	8p21.3	LZTS1, LOC286114	rs9785133-G	0.86	4E-8				NR [509413]	N
740	chr8	20393205	20393206	rs7000921	27244555	Li Y	2016-05-31	Nat Commun	Genome-wide association study identifies 8p21.3 associated with persistent hepatitis B virus infection among Chinese.	Persistent hepatitis B virus infection	1,251 Chinese ancestry persistently infected cases, 1,057 Chinese ancestry spontaneously recovered controls	3,905 Chinese ancestry persistently infected cases, 3,356 Chinese ancestry spontaneously recovered controls	8p21.3	INTS10, CSGALNACT1, LPL, SLC18A1, ATP6V1B2, LZTS1	rs7000921-C	0.278	3E-12		1.28	[1.19-1.37]	Affymetrix, Illumina [up to 4494311] (imputed)	N
740	chr8	20403575	20403576	rs112500142	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	8p21.3	NR	rs112500142-?	NR	4E-7		1.4114	[0.86-1.96] unit increase	Illumina [at least 560000] (imputed)	N
741	chr8	20497182	20497183	rs13270892	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Daytime sleep phenotypes	874 European ancestry individuals	NA	8p21.3		rs13270892-G	NR	3E-6	(daytime napping duration)	0.1206	[0.07-0.171] unit increase	Affymetrix [7141204] (imputed)	N
742	chr8	20580755	20580756	rs1530780	31560688	Geidenstam N	2019-09-27	PLoS One	Using metabolite profiling to construct and validate a metabolite risk score for predicting future weight gain.	Sphingomyelin 24:0 levels	1,937 individuals	NA	8p21.3	intergenic	rs1530780-G	0.449	4E-7		0.1646	[0.1-0.23] unit increase	Affymetrix, Illumina [up to 22000000] (imputed)	N
742	chr8	20592508	20592509	rs11985951	24700089	Miura K	2014-04-04	J Med Virol	Genome-wide association study of HPV-associated cervical cancer in Japanese women.	Cervical cancer	226 Japanese ancestry cases, 186 Japanese ancestry controls	NA	8p21.3	intergenic	rs11985951-T	0.871	6E-6		3.36	[1.94-5.83]	Affymetrix [556045]	N
742	chr8	20626320	20626321	rs2122469	23151678	Takata R	2012-11-15	J Hum Genet	Impact of four loci on serum tamsulosin hydrochloride concentration.	Serum tamsulosin hydrochloride concentration	182 Japanese ancestry individuals	NA	8p21.3	intergenic	rs2122469-C	0.02	7E-7		18.57	[11.49-25.65] unit increase	Illumina [481678]	N
742	chr8	20628792	20628793	rs1470687	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	8p21.3		rs1470687-G	NR	2E-9		0.0147	[0.01-0.0194] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
742	chr8	20632021	20632022	rs2616143	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		8p21.3	LZTS1	rs2616143-G	0.680028	2E-9		0.00884801	[0.006-0.0117] unit increase	Affymetrix [12370749]	N
742	chr8	20632021	20632022	rs2616143	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	8p21.3		rs2616143-?	NR	7E-12				NR [~ 8900000] (imputed)	N
742	chr8	20634749	20634750	rs13328379	26174813	Alemany S	2015-07-14	Am J Med Genet B Neuropsychiatr Genet	New suggestive genetic loci and biological pathways for attention function in adult attention-deficit/hyperactivity disorder.	Attention function in attention deficit hyperactive disorder	479 European ancestry adult cases	NA	8p21.3	LOC286114	rs13328379-T	0.14	8E-7	(Commissions)	3.41	[2.06-4.76] unit decrease	Illumina [799713]	N
742	chr8	20634887	20634888	rs10101364	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	8p21.3	NA	rs10101364-T	0.6801	6E-11		0.012	[0.0085-0.0155] unit increase	NR [~ 27400000] (imputed)	N
742	chr8	20639810	20639811	rs4366093	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	8p21.3	NR	rs4366093-?	NR	2E-11				Affymetrix [~ 8270000] (imputed)	N
742	chr8	20646926	20646927	rs9693826	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8p21.3	ATP6V1B2	rs9693826-?	NR	6E-6	(CE 18:0)	0.15554714	[0.088-0.223] unit decrease	Affymetrix [at least 2500000] (imputed)	N
742	chr8	20646926	20646927	rs9693826	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8p21.3	ATP6V1B2	rs9693826-?	NR	3E-6	(SM 16:1)	0.1623152	[0.095-0.23] unit decrease	Affymetrix [at least 2500000] (imputed)	N
742	chr8	20647322	20647323	rs55644114	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Cerebrospinal fluid AB1-42 levels	305 European ancestry cognitively normal individuals, 581 European ancestry mild cognitive impairment cases, 190 European ancestry Alzheimer's disease dementia cases	NA	8p21.3	RNU3P2, TMEM97P2	rs55644114-A	0.16	3E-8		0.41	[0.27-0.55] unit increase	Illumina [8454933] (imputed)	N
742	chr8	20647322	20647323	rs55644114	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Cerebrospinal AB1-42 levels in mild cognitive impairment	581 European ancestry MCI dementia cases	NA	8p21.3	RNU3P2, TMEM97P2	rs55644114-A	0.16	7E-6		0.43	[0.23-0.63] unit increase	Illumina [8448490] (imputed)	N
742	chr8	20654009	20654010	rs2410666	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8p21.3	ATP6V1B2	rs2410666-?	NR	2E-6	(SM 18:1)	0.16586071	[0.097-0.234] unit decrease	Affymetrix [at least 2500000] (imputed)	N
742	chr8	20667237	20667238	rs2616194	32944759	Deshmukh HA	2020-09-18	J Clin Endocrinol Metab	Genome-Wide Association Analysis of Pancreatic Beta Cell Glucose Sensitivity.	Pancreatic beta-cell glucose sensitivity	3,017 European ancestry individuals	2,689 European ancestry individuals	8p21.3	RP11-108E14.1	rs2616194-T	NR	8E-7		4.931	NR z score decrease	Illumina [8978282] (imputed)	N
742	chr8	20669204	20669205	rs2616191	30242241	Hachiya T	2018-09-21	Sci Rep	Genome-wide analysis of polymorphism x sodium interaction effect on blood pressure identifies a novel 3'-BCL11B gene desert locus.	Diastolic blood pressure x sodium interaction (1df test)	4,527 Japanese ancestry individuals	4,241 Japanese ancestry individuals	8p21.3	Intergenic	rs2616191-G	0.947	5E-6	(dominant)	0.056	[0.032-0.08] unit increase	Illumina [7135436] (imputed)	N
742	chr8	20673549	20673550	rs17494322	30679421	Felsky D	2019-01-24	Nat Commun	Neuropathological correlates and genetic architecture of microglial activation in elderly human brain.	Proportion of activated microglia (inferior temporal cortex)	219 individuals	NA	8p21.3	intergenic	rs17494322-G	0.075	4E-6		0.0535	NR unit increase	NR [NR] (imputed)	N
742	chr8	20681097	20681098	rs7824087	33517400	Ahluwalia TS	2021-01-30	Hum Mol Genet	Genome-Wide Association Study of Circulating Interleukin 6 Levels Identifies Novel Loci.	Interleukin-6 levels	52,654 European ancestry individuals	14,774 European ancestry individuals	8p21.3	LZTS1	rs7824087-G	0.171691	1E-6		0.031744	[0.018-0.045] unit increase	Affymetrix, Illumina, Perlegen [2454025] (imputed)	N
743	chr8	20720453	20720454	rs2616222	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Entorhinal cortical volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	8p21.3	NR	rs2616222-?		1E-7				Illumina [4322238] (imputed)	N
743	chr8	20772331	20772332	rs7017108	30942860	Shin J	2019-04-03	J Clin Endocrinol Metab	Novel genetic locus of visceral fat and systemic inflammation.	Visceral fat	1589 French-Canadian ancestry individuals	NA	8p21.3	Intergenic	rs7017108-C	NR	6E-6	(adjusted for subcutaneous fat)	0.073	[0.041-0.105] unit decrease	Illumina [8511049] (imputed)	N
743	chr8	20801576	20801577	rs118114607	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial squamous cell lung carcinoma	367 European ancestry cases, 31,563 European ancestry controls	NA	8p21.3	RP11-369E15.1	rs118114607-T	0.007	2E-6		7.55	[3.31-17.23]	Illumina [7959153] (imputed)	N
743	chr8	20803102	20803103	rs500816	26379185	Garcia-Etxebarria K	2015-09-17	PLoS One	No Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity.	Severe influenza A (H1N1) infection	49 European ancestry severe cases, 549 European ancestry population controls	NA	8p21.3	LOC286114, LZTS1	rs500816-?	0.0	3E-32				Affymetrix [547296]	N
743	chr8	20803102	20803103	rs500816	26379185	Garcia-Etxebarria K	2015-09-17	PLoS One	No Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity.	Influenza A (H1N1) infection	49 European ancestry severe cases, 107 European ancestry mild cases, 549 European ancestry population controls	NA	8p21.3	LOC286114, LZTS1	rs500816-?	NR	1E-13				Affymetrix [547296]	N
743	chr8	20839119	20839120	rs117023642	31194736	Tiensuu H	2019-06-13	PLoS Genet	Risk of spontaneous preterm birth and fetal growth associates with fetal SLIT2.	Spontaneous preterm birth with premature rupture of membranes	133 Finnish ancestry infant cases, 419 Finnish ancestry infant controls	NA	8p21.3	LOC102467222, LOC286114	rs117023642-?	NR	4E-7		5.85		Illumina [6778521] (imputed)	N
744	chr8	20852985	20852986	rs117108179	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8p21.3	NR	rs117108179-A	0.01742	9E-9	(PSMB6)	0.05378	NR unit increase	Illumina [1671387] (imputed)	N
744	chr8	20888157	20888158	rs151031517	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Antisaccade task score	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	8p21.3	intergenic	rs151031517-T	NR	2E-6		0.1342672	[0.081-0.188] unit decrease	Illumina [> 6200000] (imputed)	N
744	chr8	20912120	20912121	rs117107090	29626450	Bonfiglio F	2018-04-04	Gastroenterology	Female-specific Association Between Variants on Chromosome 9 and Self-reported Diagnosis of Irritable Bowel Syndrome.	Irritable bowel syndrome	7,130 British ancestry women cases, 2,446 British ancestry men cases, 178,076 British ancestry women controls, 158,423 British ancestry men controls	NA	8p21.3	Intergenic	rs117107090-A	0.98	3E-6		0.225	[0.13-0.32] unit decrease	Affymetrix [7287191] (imputed)	N
744	chr8	20912873	20912874	rs4961398	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	8p21.3	Intergenic	rs4961398-A	0.3019	7E-9	(MTAG)	0.0113	[0.0074-0.0152] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
744	chr8	20915315	20915316	rs1473634	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	8p21.3	NR	rs1473634-A	0.299205	1E-9		0.041697077	[0.028-0.055] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
744	chr8	20915315	20915316	rs1473634	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	8p21.3	Intergenic	rs1473634-A	0.6967	4E-10	(MTAG)	0.0112	[0.0077-0.0147] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
744	chr8	20915315	20915316	rs1473634	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	8p21.3	Intergenic	rs1473634-A	0.6956	8E-10	(MTAG)	0.0088	[0.0061-0.0115] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
744	chr8	20915315	20915316	rs1473634	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	8p21.3	Intergenic	rs1473634-A	0.6991	8E-13	(MTAG)	0.0179	[0.013-0.023] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
744	chr8	20915315	20915316	rs1473634	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	8p21.3	Intergenic	rs1473634-A	0.6991	9E-10		0.0191	[0.013-0.025] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
744	chr8	20915315	20915316	rs1473634	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	8p21.3	NR	rs1473634-A	NR	1E-9		6.073	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
744	chr8	20915315	20915316	rs1473634	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	8p21.3	ENSG00000254040	rs1473634-A	NR	3E-8		5.536	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
744	chr8	20949916	20949917	rs13250583	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	8p21.3	NR	rs13250583-T	0.213	6E-9		0.00936684	[0.0062-0.0125] unit decrease	NR [~ 9732723] (imputed)	N
744	chr8	20949916	20949917	rs13250583	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week)	up to 941,280 European ancestry individuals	NA	8p21.3	NR	rs13250583-T	0.213	5E-8		0.009717545	[0.0062-0.0132] unit decrease	NR [~ 10000000] (imputed)	N
744	chr8	20967550	20967551	rs7015657	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine with aura	5,118 European ancestry cases, 74,239 European ancestry controls	NA	8p21.3	GFRA2	rs7015657-G	0.3	8E-8		1.15	[1.09-1.21]	Affymetrix, Illumina [~ 2300000] (imputed)	N
745	chr8	20982902	20982903	rs10097964	30166627	Massey J	2018-08-31	Pharmacogenomics J	Genome-wide association study of response to tumour necrosis factor inhibitor therapy in rheumatoid arthritis.	Response to TNF inhibitor in rheumatoid arthritis (change in swollen 28-joint count)	551 European ancestry individuals treated with adalimumab, 619 European ancestry individuals treated with etanercept, 434 European ancestry individuals treated with infliximab, 119 European ancestry individuals treated with other TNF inhibitors	NA	8p21.3	LOC286114, LOC101929172	rs10097964-?		4E-8	(Infliximab)	1.28	[0.83-1.73] unit decrease	Affymetrix, Illumina [9814288] (imputed)	N
745	chr8	21034985	21034986	rs13274146	32624584	Yousaf A	2020-07-05	Transl Psychiatry	Quantitative genome-wide association study of six phenotypic subdomains identifies novel genome-wide significant variants in autism spectrum disorder.	Autism spectrum disorders (repetitive sensory-motor behaviour)	2,509 individuals	NA	8p21.3	intergenic	rs13274146-?	NR	2E-8		0.733	NR unit decrease	Illumina [6900500] (imputed)	N
745	chr8	21036229	21036230	rs7837513	32624584	Yousaf A	2020-07-05	Transl Psychiatry	Quantitative genome-wide association study of six phenotypic subdomains identifies novel genome-wide significant variants in autism spectrum disorder.	Autism spectrum disorders (repetitive sensory-motor behaviour)	2,509 individuals	NA	8p21.3	intergenic	rs7837513-?	NR	4E-9		0.776	NR unit decrease	Illumina [6900500] (imputed)	N
745	chr8	21036337	21036338	rs7824610	32624584	Yousaf A	2020-07-05	Transl Psychiatry	Quantitative genome-wide association study of six phenotypic subdomains identifies novel genome-wide significant variants in autism spectrum disorder.	Autism spectrum disorders (repetitive sensory-motor behaviour)	2,509 individuals	NA	8p21.3	intergenic	rs7824610-?	NR	2E-9		0.79	NR unit decrease	Illumina [6900500] (imputed)	N
745	chr8	21089516	21089517	rs7835492	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	8p21.3	NR	rs7835492-C	0.14678500000000005	1E-9		0.0245564	[0.016-0.033] unit increase	Affymetrix [16577313] (imputed)	N
745	chr8	21090184	21090185	rs2610974	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	8p21.3	NR	rs2610974-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
746	chr8	21112083	21112084	rs2631864	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	8p21.3	NR	rs2631864-G	0.10362499999999997	8E-12		0.0331054	[0.023-0.043] unit increase	Affymetrix [16577424] (imputed)	N
746	chr8	21117488	21117489	rs150846585	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Parabacteroides sp000436495 abundance in stool	5,959 Finnish ancestry individuals	NA	8p21.3		rs150846585-A	0.0122694	5E-8		0.506259	[0.32-0.69] unit increase	Illumina [7980478] (imputed)	N
746	chr8	21143903	21143904	rs143909535	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8p21.3	NR	rs143909535-A	0.01045	5E-9	(LTF)	0.4425	NR unit increase	Illumina [1671387] (imputed)	N
746	chr8	21143903	21143904	rs143909535	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8p21.3	NR	rs143909535-A	0.01045	5E-10	(GSN)	0.07011	NR unit increase	Illumina [1671387] (imputed)	N
746	chr8	21143903	21143904	rs143909535	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8p21.3	NR	rs143909535-A	0.01045	4E-9	(F2)	0.04611	NR unit increase	Illumina [1671387] (imputed)	N
746	chr8	21143903	21143904	rs143909535	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8p21.3	NR	rs143909535-A	0.01045	4E-10	(MPO)	0.1651	NR unit increase	Illumina [1671387] (imputed)	N
746	chr8	21156592	21156593	rs6586977	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	8p21.3	LOC100129163, GFRA2	rs6586977-G	0.002	2E-6		15.23	[3.38-68.72]	Illumina [1556551]	N
746	chr8	21190267	21190268	rs2066940	25865494	Chan Y	2015-04-09	Am J Hum Genet	Genome-wide Analysis of Body Proportion Classifies Height-Associated Variants by Mechanism of Action and Implicates Genes Important for Skeletal Development.	Sitting height ratio	3,545 African American individuals, 12,965 European ancestry women, 8,625 European ancestry men	NA	8p21.3	NR	rs2066940-T	0.611	8E-6	(EA)	0.044	[0.024-0.064] unit increase	Affymetrix, Illumina [up to 10250422] (imputed)	N
746	chr8	21199438	21199439	rs113613039	33824429	Fjukstad KK	2021-04-06	Pharmacogenomics J	Genetic variants associated with cardiometabolic abnormalities during treatment with selective serotonin reuptake inhibitors: a genome-wide association study.	Triglyceride levels x SSRI defined daily dose interaction in schizophrenia or bipolar disorder	1,180 European ancestry individuals	NA	8p21.3	RP11-24P4.1	rs113613039-A	NR	5E-9		1.76	[1.3-2.22] unit increase	Illumina [NR] (imputed)	N
746	chr8	21208207	21208208	rs1037779	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	8p21.3	NR	rs1037779-?	NR	6E-6		4.525	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
746	chr8	21216728	21216729	rs533833364	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	8p21.3		rs533833364-G	0.0015668	5E-6		0.38652	[0.22-0.55] unit decrease	Affymetrix [15580782] (imputed)	N
746	chr8	21225473	21225474	rs117403894	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Prostate cancer	7,438 White British ancestry cases, 118,206 White British ancestry controls	NA	8p21.3		rs117403894-?	NR	7E-6		1.29881	[1.18-1.41]	NR [680312]	N
747	chr8	21284338	21284339	rs147862907	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	8p21.3	intergenic	rs147862907-T	0.0154648946805661	6E-6	(G_Ruminococcus_HB)	1.21655	[0.69-1.74] unit decrease	Illumina [7711310] (imputed)	N
747	chr8	21287104	21287105	rs4739235	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	8p21.3		rs4739235-A	0.1701	5E-9		0.0109	[0.0072-0.0146] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
747	chr8	21298534	21298535	rs734364	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Cerebral white matter volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	8p21.3	NR	rs734364-?		9E-6				Illumina [4322238] (imputed)	N
747	chr8	21321003	21321004	rs12682527	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	8p21.3	NR	rs12682527-C	NR	5E-6		1.0869565	[NR]	Illumina [7158791] (imputed)	N
747	chr8	21323693	21323694	rs4739249	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	8p21.3	Intergenic	rs4739249-A	0.8256	3E-8	(MTAG)	0.0096	[0.0063-0.0129] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
748	chr8	21393689	21393690	rs7017107	33824429	Fjukstad KK	2021-04-06	Pharmacogenomics J	Genetic variants associated with cardiometabolic abnormalities during treatment with selective serotonin reuptake inhibitors: a genome-wide association study.	LDL levels x SSRI levels (escitalopram or citalopram) interaction in schizophrenia or bipolar disorder	181 European ancestry individuals	NA	8p21.3	AC022716.1	rs7017107-G	NR	9E-7		2.90073	[1.8-4] unit increase	Illumina [NR] (imputed)	N
748	chr8	21401501	21401502	rs4549762	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8p21.3	DOK2	rs4549762-?	NR	5E-7	(serine)	0.31163913	[0.19-0.43] unit decrease	Affymetrix [at least 2500000] (imputed)	N
748	chr8	21474048	21474049	rs10503709	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	8p21.3	Intergenic	rs10503709-C	0.4400202	5E-11	(EA, GDNF family receptor alpha-2)	0.287	[0.2-0.37] unit decrease	Affymetrix [509946]	N
748	chr8	21477362	21477363	rs1871742	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	8p21.3	NR	rs1871742-C	0.564	1E-25	(GDNF family receptor alpha-2, GFRA2.2515.14.3)	0.27	[0.21-0.33] unit increase	Affymetrix [10572788] (imputed)	N
748	chr8	21479254	21479255	rs4739274	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GFRA2	5,362 Icelandic ancestry individuals	NA	8p21.3		rs4739274-A	0.4403	1E-39		0.239562	[0.2-0.28] unit decrease	Illumina [7506463] (imputed)	N
748	chr8	21484456	21484457	rs1480997	25644384	Davies G	2015-02-03	Mol Psychiatry	Genetic contributions to variation in general cognitive function: a meta-analysis of genome-wide association studies in the CHARGE consortium (N=53949).	Cognitive function	51,719 European ancestry individuals, 1,473 Erasmus Rucphen (founder/genetic isolate) individuals, 327 Korculan (founder/genetic isolate) individuals, 430 Orcadian (founder/genetic isolate) individuals	NA	8p21.3	intergenic	rs1480997-?	NR	8E-6		0.0558	[0.031-0.080] unit increase	Affymetrix, Illumina [2478500] (imputed)	N
748	chr8	21487129	21487130	rs10110287	26545240	Giri A	2015-11-06	PLoS One	Genetic Determinants of Pelvic Organ Prolapse among African American and Hispanic Women in the Women's Health Initiative.	Pelvic organ prolapse (moderate/severe)	154 African American cases, 948 African American controls, 163 Hispanic cases, 305 Hispanic controls	NA	8p21.3	GFRA2	rs10110287-T	0.08	7E-7	(Hispanic)	3.69	[2.20-6.18]	Affymetrix [at least 730985] (imputed)	N
749	chr8	21497396	21497397	rs11779702	29532581	Hallfors J	2018-03-13	Addict Biol	Genome-wide association study in Finnish twins highlights the connection between nicotine addiction and neurotrophin signaling pathway.	Nicotine dependence	873 Finnish ancestry cases and 842 Finnish ancestry controls from 739 families	NA	8p21.3	NR	rs11779702-G	0.36742	8E-6		0.0799917	[0.04-0.12] unit decrease	Illumina [9469131] (imputed)	N
749	chr8	21506667	21506668	rs59294057	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	8p21.3	LOC100129163, GFRA2	rs59294057-C	0.001	1E-6		34.08	[3.52-329.69]	Illumina [1556551]	N
749	chr8	21520247	21520248	rs4292676	25648963	Debette S	2014-11-25	Biol Psychiatry	Genome-wide studies of verbal declarative memory in nondemented older people: the Cohorts for Heart and Aging Research in Genomic Epidemiology consortium.	Verbal declarative memory	Up to 27,337 European ancestry individuals, up to 472 Korkulan individuals, up to 1,267 Erasmus Rucphen Family individuals	Up to 10,617 European ancestry individuals, up to 3,811 African American individuals	8p21.3	GFRA2, DOK2	rs4292676-T	0.39	2E-6	(CERAD-dr)	0.2708	[0.16-0.38] unit increase	Affymetrix, Illumina [NR] (imputed)	N
749	chr8	21541083	21541084	rs4443656	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	8p21.3	GFRA2	rs4443656-G	0.4186747	2E-19	(GDNF family receptor alpha-2)	0.4032	[0.32-0.49] unit increase	Affymetrix [509946]	N
749	chr8	21550767	21550768	rs15881	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GFRA2	5,362 Icelandic ancestry individuals	NA	8p21.3		rs15881-A	0.4879	2E-63		0.298921	[0.26-0.33] unit decrease	Illumina [7506463] (imputed)	N
749	chr8	21550767	21550768	rs15881	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	8p21.3	GFRA2	rs15881-C	0.51375	5E-39	(GFRA2, 2515_14_3)	0.310647	[0.26-0.36] unit increase	Illumina [> 1000000] (imputed)	N
749	chr8	21550767	21550768	rs15881	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	8p21.3	GFRA2	rs15881-C	0.456	4E-33	(GDNF family receptor alpha-2, GFRA2.2515.14.3)	0.3	[0.26-0.34] unit increase	Affymetrix [10572788] (imputed)	N
749	chr8	21565622	21565623	rs11997721	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	8p21.3	NR	rs11997721-?	NR	3E-8				Illumina [7760689] (imputed)	N
749	chr8	21593147	21593148	rs28445495	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	8p21.3	GFRA2	rs28445495-G	NR	7E-7	(AA)			Illumina [up to 11995908] (imputed)	N
749	chr8	21593147	21593148	rs28445495	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	8p21.3	GFRA2	rs28445495-G	NR	7E-7				Illumina [up to 11995908] (imputed)	N
749	chr8	21618262	21618263	rs7825346	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Lung cancer	2,479 White British ancestry cases, 272,351 White British ancestry controls	NA	8p21.3		rs7825346-?	NR	8E-6		0.877195	[0.82-0.93]	NR [673172]	N
749	chr8	21621246	21621247	rs36196656	29724592	Pottier C	2018-04-30	Lancet Neurol	Potential genetic modifiers of disease risk and age at onset in patients with frontotemporal lobar degeneration and GRN mutations: a genome-wide association study.	Frontotemporal dementia with GRN mutation	382 European ancestry cases, 1,146 European ancestry controls	67 European ancestry cases, 1,798 European ancestry controls	8p21.3	GFRA2	rs36196656-A	0.65	1E-7		1.55	[1.32-1.82]	Illumina [7033776] (imputed)	N
749	chr8	21621246	21621247	rs36196656	29724592	Pottier C	2018-04-30	Lancet Neurol	Potential genetic modifiers of disease risk and age at onset in patients with frontotemporal lobar degeneration and GRN mutations: a genome-wide association study.	Frontotemporal dementia	382 European ancestry GRN mutation carrier cases, 1,146 European ancestry controls	67 GRN mutation carrier European ancestry cases, 143 GRN-negative European ancestry cases, 1,798 European ancestry controls	8p21.3	GFRA2	rs36196656-A	0.37	2E-8		1.49	[1.30-1.71]	Illumina [7033776] (imputed)	N
750	chr8	21662444	21662445	rs17581368	21116278	Furney SJ	2010-11-30	Mol Psychiatry	Genome-wide association with MRI atrophy measures as a quantitative trait locus for Alzheimer's disease.	Entorhinal cortical thickness	424 European ancestry mild cognitive impairment cases, 236 European ancestry Alzheimer's disease cases, 279 European ancestry controls	NA	8p21.3	DOK2	rs17581368-?	NR	7E-6		0.09	[NR] unit decrease	Illumina [478011]	N
750	chr8	21662847	21662848	rs7833426	26806518	Hou L	2016-01-22	Lancet	Genetic variants associated with response to lithium treatment in bipolar disorder: a genome-wide association study.	Response to lithium treatment in bipolar disorder (continuous phenotype)	2,039 European ancestry individuals, 194 East Asian ancestry individuals	NA	8p21.3	GFRA2	rs7833426-A	0.92	2E-7	(East Asian)	3.66	[2.37-4.94] unit increase	Affymetrix, Illumina [> 6000000] (imputed)	N
750	chr8	21665305	21665306	rs12546455	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	8p21.3	NR	rs12546455-T	NR	2E-9		0.0331	[0.022-0.044] unit decrease	Affymetrix [9000000] (imputed)	N
750	chr8	21685174	21685174	rs202184555	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	8p21.3	NR	rs202184555-GT	0.297	8E-16	(GDNF family receptor alpha-2, GFRA2.2515.14.3)	0.22	[0.16-0.28] unit decrease	Affymetrix [10572788] (imputed)	N
750	chr8	21691613	21691614	rs4872494	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GFRA2	5,362 Icelandic ancestry individuals	NA	8p21.3		rs4872494-A	0.3115	2E-8		0.10908	[0.071-0.147] unit decrease	Illumina [7506463] (imputed)	N
750	chr8	21707249	21707250	rs117308430	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Trunk fat mass	3,399 whole genome sequenced individuals, 12,838 European ancestry individuals	10,667 European ancestry individuals	8p21.3	GFRA2	rs117308430-A	0.0025	5E-6		0.6738	[0.38-0.96] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
750	chr8	21710740	21710741	rs117342529	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	8p21.3		rs117342529-?	NR	2E-8				NR [~ 8900000] (imputed)	N
750	chr8	21711430	21711431	rs17428041	24974787	Meng W	2014-06-26	Eur J Pain	A genome-wide association study suggests an association of Chr8p21.3 (GFRA2) with diabetic neuropathic pain.	Neuropathic pain in type 2 diabetes	572 European ancestry cases, 2,491 European ancestry controls	NA	8p21.3	DOK2, GFRA2	rs17428041-T	0.7092	2E-7		1.49	[NR]	Affymetrix, Illumina [6494962] (imputed)	N
750	chr8	21712292	21712293	rs6990439	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8p21.3	XPO7	rs6990439-?	NR	3E-6	(cystathionine)	0.33615646	[0.19-0.48] unit decrease	Affymetrix [at least 2500000] (imputed)	N
750	chr8	21736271	21736272	rs533703709	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8p21.3	NR	rs533703709-T	0.0405968	7E-17				Affymetrix, Illumina [23472807] (imputed)	N
751	chr8	21762914	21762915	rs1075417	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	8p21.3		rs1075417-C	NR	5E-11		0.014	[0.0099-0.0181] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
751	chr8	21762914	21762915	rs1075417	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	8p21.3	DOK2	rs1075417-C	0.574017	2E-13		0.016513217	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
751	chr8	21763392	21763393	rs1479056	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	8p21.3	DOK2	rs1479056-A	0.424881	4E-13		0.01623125	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
751	chr8	21764742	21764743	rs12543924	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8p21.3	NR	rs12543924-C	0.571445	1E-16				Affymetrix, Illumina [23467995] (imputed)	N
751	chr8	21764742	21764743	rs12543924	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	8p21.3	NR	rs12543924-C	0.558486	3E-18		0.016568	[0.013-0.02] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
751	chr8	21766880	21766881	rs2242241	30206226	Chang J	2018-09-11	Nat Commun	Exome-wide analysis identifies three low-frequency missense variants associated with pancreatic cancer risk in Chinese populations.	Pancreatic cancer	943 Chinese ancestry cases, 3,908 Chinese ancestry controls	2,142 Chinese ancestry cases, 4,697 Chinese ancestry controls	8p21.3	DOK2	rs2242241-G	0.014	4E-9		1.85	[1.50-2.27]	Illumina [174391]	N
751	chr8	21767239	21767240	rs34215892	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	8p21.3	DOK2	rs34215892-A	0.028381	4E-11		0.04453459	[0.031-0.058] unit increase	Affymetrix [93095623] (imputed)	N
751	chr8	21767239	21767240	rs34215892	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	8p21.3	NR	rs34215892-A	0.028499	2E-10		0.038125	[0.026-0.05] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
751	chr8	21767239	21767240	rs34215892	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	8p21.3		rs34215892-?	NR	8E-9				NR [~ 8900000] (imputed)	N
751	chr8	21769431	21769432	rs56094005	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	8p21.3		rs56094005-G	NR	1E-14		0.0465	[0.035-0.058] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
751	chr8	21769431	21769432	rs56094005	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	8p21.3		rs56094005-G	NR	1E-9		0.0355	[0.024-0.047] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
751	chr8	21769431	21769432	rs56094005	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	8p21.3	DOK2	rs56094005-G	0.0433789999999999	1E-14		0.04251164	[0.032-0.053] unit increase	Affymetrix [93095623] (imputed)	N
751	chr8	21769431	21769432	rs56094005	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	8p21.3	DOK2	rs56094005-G	0.043383	2E-26		0.058919013	[0.048-0.07] unit increase	Affymetrix [93095623] (imputed)	N
751	chr8	21769431	21769432	rs56094005	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	8p21.3	DOK2	rs56094005-G	0.043596	2E-14		0.041543104	[0.031-0.052] unit decrease	Affymetrix [93095623] (imputed)	N
751	chr8	21769431	21769432	rs56094005	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8p21.3	NR	rs56094005-A	0.958514	3E-36				Affymetrix, Illumina [17210439] (imputed)	N
751	chr8	21769431	21769432	rs56094005	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	8p21.3	NR	rs56094005-A	0.956859	2E-39		0.062395	[0.053-0.072] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
751	chr8	21769431	21769432	rs56094005	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	8p21.3	NR	rs56094005-G	0.042917	2E-17		0.040102	[0.031-0.049] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
751	chr8	21770762	21770763	rs899428	31564439	Fang H	2019-09-26	Am J Hum Genet	Harmonizing Genetic Ancestry and Self-identified Race/Ethnicity in Genome-wide Association Studies.	Height	up to 248,507 non-Hispanic white individuals, up to 68,155 non-Hispanic black individuals, up to 25,847 Hispanic individuals, up to 3,054 Asian ancestry individuals	NA	8p21.3	NR	rs899428-T	NR	1E-8	(EA)	0.04	NR unit increase	Affymetrix [723305]	N
751	chr8	21770762	21770763	rs899428	31564439	Fang H	2019-09-26	Am J Hum Genet	Harmonizing Genetic Ancestry and Self-identified Race/Ethnicity in Genome-wide Association Studies.	Height	up to 248,507 non-Hispanic white individuals, up to 68,155 non-Hispanic black individuals, up to 25,847 Hispanic individuals, up to 3,054 Asian ancestry individuals	NA	8p21.3	NR	rs899428-T	NR	1E-7				Affymetrix [723305]	N
751	chr8	21774885	21774886	rs116940352	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	8p21.3	DOK2, XPO7	rs116940352-A	0.029396	4E-10		0.04172211	[0.029-0.055] unit increase	Affymetrix [93095623] (imputed)	N
751	chr8	21775837	21775838	rs56317071	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	8p21.3	XPO7	rs56317071-C	0.12	1E-8		0.57	[0.37-0.77] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
751	chr8	21775837	21775838	rs56317071	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	8p21.3	XPO7	rs56317071-C	0.1129	6E-7		0.5307	[0.32-0.74] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
751	chr8	21776680	21776681	rs61494024	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8p21.3	DOK2, XPO7	rs61494024-T	0.873082	9E-9	(-90 ms)	0.0490428	[0.032-0.066] unit increase	Affymetrix [10000000] (imputed)	N
751	chr8	21776680	21776681	rs61494024	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8p21.3	DOK2, XPO7	rs61494024-T	0.873082	8E-11	(-84 ms)	0.0557706	[0.039-0.073] unit increase	Affymetrix [10000000] (imputed)	N
751	chr8	21776680	21776681	rs61494024	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8p21.3	DOK2, XPO7	rs61494024-T	0.873082	5E-10	(-82 ms)	0.053129	[0.036-0.07] unit increase	Affymetrix [10000000] (imputed)	N
751	chr8	21776680	21776681	rs61494024	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8p21.3	DOK2, XPO7	rs61494024-T	0.873082	3E-9	(-88 ms)	0.0507447	[0.034-0.068] unit increase	Affymetrix [10000000] (imputed)	N
751	chr8	21776680	21776681	rs61494024	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8p21.3	DOK2, XPO7	rs61494024-T	0.873082	3E-9	(-80 ms)	0.050969	[0.034-0.068] unit increase	Affymetrix [10000000] (imputed)	N
751	chr8	21776680	21776681	rs61494024	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8p21.3	DOK2, XPO7	rs61494024-T	0.873082	3E-9	(-78 ms)	0.0512644	[0.034-0.068] unit increase	Affymetrix [10000000] (imputed)	N
751	chr8	21776680	21776681	rs61494024	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8p21.3	DOK2, XPO7	rs61494024-T	0.873082	3E-8	(-96 ms)	0.0483234	[0.032-0.065] unit increase	Affymetrix [10000000] (imputed)	N
751	chr8	21776680	21776681	rs61494024	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8p21.3	DOK2, XPO7	rs61494024-T	0.873082	3E-8	(-76 ms)	0.0480011	[0.031-0.065] unit increase	Affymetrix [10000000] (imputed)	N
751	chr8	21776680	21776681	rs61494024	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8p21.3	DOK2, XPO7	rs61494024-T	0.873082	2E-9	(-92 ms)	0.0514687	[0.035-0.068] unit increase	Affymetrix [10000000] (imputed)	N
751	chr8	21776680	21776681	rs61494024	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8p21.3	DOK2, XPO7	rs61494024-T	0.873082	2E-8	(-100 ms)	0.0482045	[0.031-0.065] unit increase	Affymetrix [10000000] (imputed)	N
751	chr8	21776680	21776681	rs61494024	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8p21.3	DOK2, XPO7	rs61494024-T	0.873082	2E-10	(-86 ms)	0.0545472	[0.038-0.071] unit increase	Affymetrix [10000000] (imputed)	N
751	chr8	21779936	21779937	rs80207740	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	8p21.3		rs80207740-G	0.355359	1E-34		0.0465521	[0.039-0.054] unit increase	Illumina [13476266] (imputed)	N
751	chr8	21779936	21779937	rs80207740	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	8p21.3		rs80207740-G	0.355214	1E-29		0.0433197	[0.036-0.051] unit increase	Illumina [13476299] (imputed)	N
751	chr8	21779936	21779937	rs80207740	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8p21.3	NR	rs80207740-G	0.187789	6E-146				Affymetrix, Illumina [24246363] (imputed)	N
751	chr8	21779936	21779937	rs80207740	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	121,047 East Asian ancestry individuals	NA	8p21.3	NR	rs80207740-C	0.653853	1E-30		0.050706	[0.042-0.059] SD units decrease	Affymetrix, Illumina [16286195] (imputed)	N
751	chr8	21779936	21779937	rs80207740	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8p21.3	NR	rs80207740-G	0.191758	1E-118				Affymetrix, Illumina [20825802] (imputed)	N
751	chr8	21779936	21779937	rs80207740	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	119,629 East Asian ancestry individuals	NA	8p21.3	NR	rs80207740-C	0.65385	1E-25		0.046504	[0.038-0.055] SD units decrease	Affymetrix, Illumina [16286228] (imputed)	N
751	chr8	21779936	21779937	rs80207740	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular volume	108,256 Japanese ancestry individuals	NA	8p21.3	XPO7	rs80207740-?	NR	3E-24		0.04693	[0.038-0.056] unit increase novel	Illumina [6108953] (imputed)	N
751	chr8	21779936	21779937	rs80207740	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	8p21.3	XPO7	rs80207740-G	0.1593	7E-33		0.05814802	[0.049-0.068] unit increase	Affymetrix [~ 2500000] (imputed)	N
751	chr8	21791771	21791772	rs58141407	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	8p21.3	XPO7	rs58141407-T	0.160134	1E-31		0.035319716	[0.029-0.041] unit decrease	Affymetrix [93095623] (imputed)	N
751	chr8	21791771	21791772	rs58141407	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	8p21.3	XPO7	rs58141407-T	0.160062	1E-49		0.044816636	[0.039-0.051] unit increase	Affymetrix [93095623] (imputed)	N
751	chr8	21791771	21791772	rs58141407	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	8p21.3	XPO7	rs58141407-T	0.160109	8E-93		0.0598712	[0.054-0.065] unit increase	Affymetrix [93095623] (imputed)	N
751	chr8	21791771	21791772	rs58141407	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	8p21.3	XPO7	rs58141407-T	0.160097	2E-70		0.053614955	[0.048-0.06] unit increase	Affymetrix [93095623] (imputed)	N
751	chr8	21791771	21791772	rs58141407	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8p21.3	NR	rs58141407-T	0.177146	6E-48				Affymetrix, Illumina [24332387] (imputed)	N
751	chr8	21791771	21791772	rs58141407	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	8p21.3	NR	rs58141407-T	0.158533	9E-42		0.034531	[0.03-0.04] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
751	chr8	21791771	21791772	rs58141407	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	8p21.3	NR	rs58141407-T	0.158512	3E-120		0.058374	[0.053-0.063] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
751	chr8	21791771	21791772	rs58141407	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	8p21.3		rs58141407-?	NR	2E-34				NR [~ 8900000] (imputed)	N
751	chr8	21791771	21791772	rs58141407	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	8p21.3		rs58141407-?	NR	3E-87				NR [~ 8900000] (imputed)	N
751	chr8	21791771	21791772	rs58141407	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	8p21.3	XPO7	rs58141407-T	0.1599	6E-15		0.0380205	[0.028-0.048] unit decrease	Affymetrix [~ 2500000] (imputed)	N
751	chr8	21791771	21791772	rs58141407	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	8p21.3	XPO7	rs58141407-T	0.1598	4E-33		0.05798697	[0.049-0.067] unit increase	Affymetrix [~ 2500000] (imputed)	N
751	chr8	21799940	21799941	rs62492076	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	8p21.3	NR	rs62492076-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
751	chr8	21802271	21802272	rs76008177	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	8p21.3		rs76008177-T	NR	1E-37		0.0281	[0.024-0.032] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
751	chr8	21802271	21802272	rs76008177	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	8p21.3	XPO7	rs76008177-T	0.160585	3E-85		0.060761854	[0.055-0.067] unit increase	Affymetrix [93095623] (imputed)	N
751	chr8	21803734	21803735	rs7846485	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atrial fibrillation/atrial flutter	29,212 European ancestry cases, 400,539 European ancestry controls, 4,150 East Asian ancestry cases, 155,540 East Asian ancestry controls	NA	8p21.3		rs7846485-A	NR	6E-9		0.0868	[0.058-0.116] unit decrease	Affymetrix, Illumina [25830072] (imputed)	N
751	chr8	21803734	21803735	rs7846485	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	8p21.3	XPO7	rs7846485-C	0.87	4E-15		1.09	[1.07-1.12]	Affymetrix, Illumina [up to 12149979] (imputed)	N
751	chr8	21805264	21805265	rs6998692	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	8p21.3	XPO7	rs6998692-T	0.88	4E-13	(EA)	1.09	[1.07-1.12]	Affymetrix, Illumina [up to 12149979] (imputed)	N
751	chr8	21807756	21807757	rs17581959	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	8p21.3		rs17581959-G	NR	2E-80		0.0462	[0.041-0.051] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
751	chr8	21811529	21811530	rs7821592	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8p21.3	NR	rs7821592-G	0.421696	3E-15				Affymetrix, Illumina [24588908] (imputed)	N
751	chr8	21811529	21811530	rs7821592	31151762	Gelernter J	2019-04-08	Biol Psychiatry	Genome-wide Association Study of Maximum Habitual Alcohol Intake in >140,000 U.S. European and African American Veterans Yields Novel Risk Loci.	Maximum habitual alcohol consumption	126,936 European ancestry individuals, 17,029 African American individuals	NA	8p21.3	XPO7	rs7821592-?	NR	4E-8	(EA)	0.04764	NR unit increase	Affymetrix [up to 6007810] (imputed)	N
751	chr8	21814156	21814157	rs35589404	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	8p21.3		rs35589404-C	NR	5E-9		0.0097	[0.0064-0.013] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
751	chr8	21818059	21818060	rs2054711	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	153,512 East Asian ancestry individuals	NA	8p21.3		rs2054711-G	0.28664	1E-13		0.0256484	[0.019-0.032] unit decrease	Illumina [13479135] (imputed)	N
751	chr8	21818167	21818168	rs148139592	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	8p21.3	XPO7	rs148139592-C	0.006019	5E-25		0.15689275	[0.13-0.19] unit decrease	Affymetrix [93095623] (imputed)	N
751	chr8	21820812	21820813	rs7843479	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular volume	up to 29,946 European ancestry individuals, up to 6150 African American individuals, 15,074 East Asian individuals.	16,389 individuals of European and African American ancestry.	8p21.3	NR	rs7843479-?	NR	1E-7				NR [2500000] (imputed)	N
751	chr8	21820812	21820813	rs7843479	20139978	Kamatani Y	2010-02-07	Nat Genet	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Mean corpuscular volume	14,364 Japanese ancestry individuals	NA	8p21.3	DOK2, XPO7	rs7843479-A	0.29	3E-8		0.072	[0.047-0.097] unit increase	Illumina [561583]	N
751	chr8	21821777	21821778	rs7834729	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	8p21.3	XPO7	rs7834729-G	0.885	4E-10		1.07	[1.05-1.09]	Illumina [34740186] (imputed)	N
751	chr8	21827161	21827162	rs2291317	31151762	Gelernter J	2019-04-08	Biol Psychiatry	Genome-wide Association Study of Maximum Habitual Alcohol Intake in >140,000 U.S. European and African American Veterans Yields Novel Risk Loci.	Maximum habitual alcohol consumption	126,936 European ancestry individuals, 17,029 African American individuals	NA	8p21.3	XPO7	rs2291317-?	NR	2E-8		5.575	NR z score decrease	Affymetrix [up to 6007810] (imputed)	N
751	chr8	21831805	21831806	rs192020759	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	8p21.3	XPO7	rs192020759-G	0.00597700000000001	4E-19		0.0799192	[0.053-0.107] unit decrease	Affymetrix [93095623] (imputed)	N
751	chr8	21832493	21832494	rs3816788	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in ever smokers	23,223 European ancestry cases,  16,964 European ancestry controls	NA	8p21.3	XPO7	rs3816788-A	0.436201023	3E-6		1.0732349	[1.041764213-1.10565643]	Illumina [10439017] (imputed)	N
751	chr8	21836019	21836020	rs2076940	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular hemoglobin	up to 21,020 European ancestry individuals, up to 3,621 African American individuals, up to 15,062 East Asian individuals.	16,389 individuals of European and African American ancestry.	8p21.3	XPO7	rs2076940-A	NR	5E-7	(Asian)	0.0038	[0.0022-0.0054] unit decrease	NR [2500000] (imputed)	N
751	chr8	21836383	21836384	rs1809498	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	150,708 East Asian ancestry individuals	NA	8p21.3	NR	rs1809498-C	0.697767	9E-12		0.027383	[0.02-0.035] SD units increase	Affymetrix, Illumina [16709798] (imputed)	N
751	chr8	21849565	21849566	rs17296501	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	8p21.3		rs17296501-T	NR	2E-91		0.0497	[0.045-0.054] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
751	chr8	21849565	21849566	rs17296501	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	8p21.3		rs17296501-C	0.838	8E-59		0.24	[-0.27--0.21] % decrease	Affymetrix [NR] (imputed)	N
751	chr8	21849565	21849566	rs17296501	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	8p21.3	NR	rs17296501-T	0.159691	3E-98		0.055664	[0.05-0.061] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
751	chr8	21849715	21849716	rs117761121	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8p21.3	NR	rs117761121-C	0.02265	3E-8	(SHMT2)	0.4734	NR unit increase	Illumina [1671387] (imputed)	N
751	chr8	21849961	21849962	rs727694	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin	108,054 Japanese ancestry individuals	NA	8p21.3	XPO7	rs727694-?	NR	3E-21		0.0413	[0.033-0.05] unit increase novel	Illumina [6108953] (imputed)	N
751	chr8	21853732	21853733	rs67385415	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	8p21.3	NA	rs67385415-T		5E-9		0.0108748	[0.0072-0.0145] unit increase	Illumina [13288253] (imputed)	N
751	chr8	21861662	21861663	rs10866837	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	8p21.3		rs10866837-?	NR	6E-18				NR [~ 8900000] (imputed)	N
751	chr8	21863289	21863290	rs7220	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	8p21.3		rs7220-A	0.496475	2E-8		0.01864	[0.012-0.025] unit decrease	Illumina [13478928] (imputed)	N
751	chr8	21884543	21884544	rs11776272	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	8p21.3	NPM2	rs11776272-G	0.18	5E-6	(Birth weight )	0.05	[NR] kg increase	Illumina [899892]	N
751	chr8	21888569	21888570	rs12550716	28031287	Sasayama D	2016-11-26	Hum Mol Genet	Genome-wide quantitative trait loci mapping of the human cerebrospinal fluid proteome.	Cerebrospinal fluid biomarker levels	133 Japanese ancestry individuals.	NA	8p21.3	NR	rs12550716-?	NR	1E-16	(Fibroblast growth factor 17)			Illumina [514227]	N
752	chr8	21904211	21904212	rs1078363	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	8p21.3		rs1078363-T	0.3	4E-13		7.26	z score increase	Affymetrix [9061022] (imputed)	N
752	chr8	21904211	21904212	rs1078363	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	8p21.3	NR	rs1078363-T	0.2726	1E-16				NR [9056863] (imputed)	N
752	chr8	21906788	21906789	rs113973451	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	8p21.3	NR	rs113973451-G	0.822646	8E-13		0.00695525	[0.0048-0.0091] unit increase	Affymetrix [16582909] (imputed)	N
752	chr8	21906788	21906789	rs113973451	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	8p21.3	NR	rs113973451-G	0.822646	3E-8		0.00589495	[0.0035-0.0083] unit increase	Affymetrix [16582965] (imputed)	N
752	chr8	21917221	21917222	rs73545546	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	8p21.3		rs73545546-C	NR	6E-57		0.0451	[0.04-0.051] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
752	chr8	21917221	21917222	rs73545546	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	8p21.3	DMTN	rs73545546-C	0.16	3E-12		6.98	z-score increase	Affymetrix [4312306] (imputed)	N
752	chr8	21918088	21918089	rs900776	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Gamma glutamyl transferase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	8p21.3	DMTN	rs900776-?		7E-9		0.0463	[0.031-0.062] unit increase	Illumina [31500000] (imputed)	N
752	chr8	21920051	21920052	rs12543764	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	8p21.3		rs12543764-C	NR	2E-8		0.0164	[0.011-0.022] unit decrease	Affymetrix, Illumina [20521447] (imputed)	N
752	chr8	21920051	21920052	rs12543764	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	8p21.3		rs12543764-C	NR	2E-13		0.02	[0.015-0.025] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
752	chr8	21927459	21927460	rs7386762	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	8p21.3	EPB49, DMTN	rs7386762-?	NR	8E-13		0.0237	[0.018-0.03] unit decrease	Affymetrix [5701386] (imputed)	N
752	chr8	21928226	21928227	rs59328596	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	8p21.3	DMTN	rs59328596-G	0.851882	9E-10		0.0179765	[0.012-0.024] unit increase	Affymetrix [NR] (imputed)	N
752	chr8	21928226	21928227	rs59328596	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	8p21.3	DMTN	rs59328596-G	0.851898	5E-13		0.0211048	[0.015-0.027] unit increase	Affymetrix [NR] (imputed)	N
752	chr8	21932730	21932731	rs73545584	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	8p21.3	NR	rs73545584-C	NR	3E-11		0.0243	[0.017-0.032] unit decrease	Affymetrix [9000000] (imputed)	N
752	chr8	21932730	21932731	rs73545584	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	8p21.3	NR	rs73545584-C	NR	1E-38		0.0475	[0.04-0.055] unit increase	Affymetrix [9000000] (imputed)	N
752	chr8	21932730	21932731	rs73545584	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	8p21.3	NR	rs73545584-C	NR	3E-14		0.0279	[0.021-0.035] unit decrease	Affymetrix [9000000] (imputed)	N
752	chr8	21937440	21937441	rs6557780	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	8p21.3	DMTN	rs6557780-G	0.165376	5E-78		0.0126937	[0.011-0.014] unit increase	Affymetrix [13995440] (imputed)	N
752	chr8	21937666	21937667	rs6557781	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	8p21.3	DMTN	rs6557781-T	0.151681	5E-15		0.00417384	[0.0031-0.0052] unit increase	Affymetrix [13995440] (imputed)	N
752	chr8	21937666	21937667	rs6557781	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	8p21.3	DMTN	rs6557781-T	0.1836	9E-12		0.0196	[0.014-0.025] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
752	chr8	21937666	21937667	rs6557781	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	8p21.3	DMTN	rs6557781-T	0.1835	2E-10		0.0186	[0.013-0.024] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
752	chr8	21945517	21945518	rs2309233	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	8p21.3		rs2309233-C	NR	6E-14		0.0213	[0.016-0.027] unit increase	Affymetrix, Illumina [20528270] (imputed)	N
752	chr8	21946300	21946301	rs62493995	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	8p21.3	NR	rs62493995-G	0.2876	1E-13		0.001932	[0.0014-0.0024] unit decrease	Affymetrix [NR] (imputed)	N
752	chr8	21951008	21951009	rs6994183	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous malignant melanoma	36,760 European ancestry cases, 375,188 European ancestry controls	NA	8p21.3	FAM160B2	rs6994183-T	0.1335	5E-9		1.0843635	NR	Affymetrix, Illumina [NR] (imputed)	N
752	chr8	21963367	21963368	rs56953221	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Nevus count or cutaneous melanoma	36,760 European ancestry cutaneous melanoma cases, 375,188 European ancestry controls, 12,930 European ancestry individuals, 52,847 individuals	NA	8p21.3	FAM160B2	rs56953221-G	0.132415	2E-9				Affymetrix, Illumina [NR] (imputed)	N
752	chr8	21964223	21964224	rs2279355	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	8p21.3		rs2279355-G	0.45	4E-8		5.49	z score increase	Affymetrix [9061022] (imputed)	N
752	chr8	21964801	21964802	rs1552286	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	8p21.3		rs1552286-?	NR	2E-8				NR [~ 8900000] (imputed)	N
752	chr8	21975520	21975521	rs11786089	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	8p21.3		rs11786089-G	0.46	9E-9				NR [NR] (imputed)	N
752	chr8	21975520	21975521	rs11786089	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	8p21.3		rs11786089-G	0.46	1E-12		0.01	% increase	NR [NR] (imputed)	N
752	chr8	21978371	21978372	rs76547188	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	8p21.3	HR	rs76547188-A	0.0050	5E-6	(TBF-b1 )	0.03	[NR] pg/mL increase	Illumina [899892]	N
752	chr8	21990797	21990798	rs4335126	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	8p21.3		rs4335126-?	NR	2E-9				NR [~ 8900000] (imputed)	N
752	chr8	21992803	21992804	rs56299474	34431594	Atkins JL	2021-08-25	Aging Cell	A genome-wide association study of the frailty index highlights brain pathways in ageing.	Frailty index	175,226 European ancestry individuals	NA	8p21.3	REEP4	rs56299474-A	0.1733	4E-8		0.0241	[0.015-0.033] unit increase	Affymetrix, Illumina [7666890] (imputed)	N
753	chr8	22020258	22020259	rs8192327	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	8p21.3		rs8192327-?	NR	1E-10				NR [~ 8900000] (imputed)	N
753	chr8	22024161	22024162	rs4348488	30514930	Mukherjee S	2018-12-04	Mol Psychiatry	Genetic data and cognitively defined late-onset Alzheimer's disease subgroups.	Alzheimer's disease with multiple cognitive domain impairments	Up to 248 European ancestry cases, 3,447 European ancestry controls	NA	8p21.3	NR	rs4348488-C	0.21	3E-6		1.97	[1.68-2.26]	NR [up to 6398204] (imputed)	N
753	chr8	22030064	22030065	rs73225842	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	8p21.3	BMP1, SFTPC	rs73225842-T	0.05	2E-10		0.096	[0.067-0.125] unit increase	Affymetrix [7947838] (imputed)	N
753	chr8	22033614	22033615	rs6984210	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	8p21.3	BMP1	rs6984210-C	0.939	1E-11		0.0784	[0.056-0.101] unit decrease	Affymetrix [at least 7947838] (imputed)	N
753	chr8	22033614	22033615	rs6984210	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	8p21.3	BMP1	rs6984210-C	0.9382	2E-11		0.0846	[0.06-0.109] unit decrease	NR [8041861] (imputed)	N
753	chr8	22040288	22040289	rs112366642	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-to-hip ratio adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,049 whole genome sequenced individuals, 29,518 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,001 Mylopotamos (founder/genetic isolate) individuals, 867 Pomak (founder/genetic isolate) individuals	206,045 European ancestry individuals	8p21.3	BMP1	rs112366642-A	0.0023	2E-6		0.8995	[0.53-1.27] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
753	chr8	22047222	22047223	rs73225849	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	8p21.3	BMP1	rs73225849-C	0.057606	5E-9		1.1	[1.07-1.14]	NR [8126035] (imputed)	N
753	chr8	22081707	22081708	rs4075536	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Subjective well-being	298,420 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	8p21.3	NR	rs4075536-A	0.8026	3E-6		0.018926965	[0.011-0.027] unit increase	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
753	chr8	22088431	22088432	rs12541335	23505323	Weissglas-Volkov D	2013-03-15	J Med Genet	Genomic study in Mexicans identifies a new locus for triglycerides and refines European lipid loci.	Hypertriglyceridemia	1,122 Mexican ancestry cases, 1,118 Mexican ancestry controls	1,067 Mexican ancestry cases, 1,054 Mexican ancestry controls	8p21.3	SFTPC, REEP4, POLR3D, PIWIL2, PHYHIP, LGI3, BMP1	rs12541335-G	0.66	7E-6		1.23	[1.13-1.33]	Illumina [1361436] (imputed)	N
753	chr8	22119756	22119757	rs140244976	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Myringotomy	4,138 European ancestry cases, 85,089 European ancestry controls	NA	8p21.3	NR	rs140244976-?	NR	3E-7		2.5009	[1.1-3.9] unit decrease	Illumina [at least 560000] (imputed)	N
754	chr8	22163796	22163797	rs6993855	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	8p21.3		rs6993855-?	NR	9E-8				NR [~ 8900000] (imputed)	N
754	chr8	22191502	22191503	rs13273616	28108127	Eitel I	2017-01-15	Int J Cardiol	Genome-wide association study in takotsubo syndrome - Preliminary results and future directions.	Takotsubo syndrome	96 European ancestry cases, 475 controls	NA	8p21.3	NR	rs13273616-C	0.53	6E-6		2.2222223	NR	NR [at least 498281] (imputed)	N
754	chr8	22201334	22201335	rs184894475	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	8p21.3		rs184894475-G	0.0024401	7E-6		0.30748	[0.17-0.44] unit decrease	Affymetrix [15580782] (imputed)	N
754	chr8	22228969	22228970	rs28725234	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	8p21.3		rs28725234-A	NR	1E-8		0.013	[0.0085-0.0175] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
754	chr8	22228969	22228970	rs28725234	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	8p21.3		rs28725234-A	NR	2E-8		0.0129	[0.0084-0.0174] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
754	chr8	22264333	22264334	rs7828089	25648963	Debette S	2014-11-25	Biol Psychiatry	Genome-wide studies of verbal declarative memory in nondemented older people: the Cohorts for Heart and Aging Research in Genomic Epidemiology consortium.	Verbal declarative memory	Up to 27,337 European ancestry individuals, up to 472 Korkulan individuals, up to 1,267 Erasmus Rucphen Family individuals	Up to 10,617 European ancestry individuals, up to 3,811 African American individuals	8p21.3	SLC39A14, PPP3CC	rs7828089-G	0.48	2E-6	(ALL-dr, EA)			Affymetrix, Illumina [NR] (imputed)	N
754	chr8	22264333	22264334	rs7828089	25648963	Debette S	2014-11-25	Biol Psychiatry	Genome-wide studies of verbal declarative memory in nondemented older people: the Cohorts for Heart and Aging Research in Genomic Epidemiology consortium.	Verbal declarative memory	Up to 27,337 European ancestry individuals, up to 472 Korkulan individuals, up to 1,267 Erasmus Rucphen Family individuals	Up to 10,617 European ancestry individuals, up to 3,811 African American individuals	8p21.3	SLC39A14, PPP3CC	rs7828089-G	0.48	2E-6	(ALL-dr)			Affymetrix, Illumina [NR] (imputed)	N
754	chr8	22276250	22276251	rs7000551	29237677	Salo PP	2017-12-01	Circ Cardiovasc Genet	Genome-Wide Association Study Implicates Atrial Natriuretic Peptide Rather Than B-Type Natriuretic Peptide in the Regulation of Blood Pressure in the General Population.	B-type natriuretic peptide to N-terminal pro B-type natriuretic peptide ratio	4,932 Finnish ancestry individuals	1,373 Finnish ancestry individuals	8p21.3	SLC39A14	rs7000551-G	0.631	2E-9		0.109	[0.074-0.144] Unit increase	Illumina [7358451] (imputed)	N
755	chr8	22324681	22324682	rs13271691	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	8p21.3	PPP3CC	rs13271691-A	0.589	1E-8		0.0068	[0.0044-0.0092] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
755	chr8	22331873	22331874	rs73227871	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	8p21.3		rs73227871-?	NR	9E-8				NR [~ 8900000] (imputed)	N
755	chr8	22400988	22400989	rs4872511	20205591	Pelak K	2010-04-15	J Infect Dis	Host determinants of HIV-1 control in African Americans.	HIV-1 viral setpoint	515 African American cases	NA	8p21.3	PPP3CC	rs4872511-?	0.01	9E-6				Illumina [1212217]	N
755	chr8	22404839	22404840	rs2280890	20205591	Pelak K	2010-04-15	J Infect Dis	Host determinants of HIV-1 control in African Americans.	HIV-1 viral setpoint	515 African American cases	NA	8p21.3	SORBS3	rs2280890-?	0.01	9E-6				Illumina [1212217]	N
756	chr8	22423807	22423808	rs13259625	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	8p21.3	SORBS3	rs13259625-G	NR	8E-6		0.0668709	[0.037-0.096] unit increase	Illumina [13520550] (imputed)	N
756	chr8	22428707	22428708	rs1047030	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	8p21.3	SORBS3	rs1047030-A	0.8052	3E-10		0.1291	[0.089-0.169] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
756	chr8	22436680	22436681	rs11545016	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	8p21.3		rs11545016-?	NR	3E-8				NR [~ 8900000] (imputed)	N
756	chr8	22437140	22437141	rs11786352	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	8p21.3	PDLIM2	rs11786352-A	0.219549	1E-20		0.02572314	[0.02-0.031] unit increase	Affymetrix [93095623] (imputed)	N
756	chr8	22437140	22437141	rs11786352	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	8p21.3	PDLIM2	rs11786352-A	0.219531	2E-21		0.026187962	[0.021-0.032] unit increase	Affymetrix [93095623] (imputed)	N
756	chr8	22439955	22439956	rs34366705	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	8p21.3		rs34366705-G	NR	1E-19		0.0231	[0.018-0.028] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
756	chr8	22439955	22439956	rs34366705	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8p21.3	NR	rs34366705-G	0.192223	5E-28				Affymetrix, Illumina [24588908] (imputed)	N
756	chr8	22439955	22439956	rs34366705	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	8p21.3	NR	rs34366705-G	0.224749	2E-28		0.025715	[0.021-0.03] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
756	chr8	22440207	22440208	rs11779638	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	8p21.3		rs11779638-A	0.766	9E-11				Affymetrix [10369434] (imputed)	N
756	chr8	22449483	22449484	rs4592028	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	8p21.3	NR	rs4592028-C	NR	3E-9		0.0157	[0.01-0.021] unit increase	Affymetrix [9000000] (imputed)	N
756	chr8	22457803	22457804	rs746011	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	8p21.3	C8orf58	rs746011-T	0.3037	2E-10		0.0173	[0.012-0.023] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
756	chr8	22462851	22462852	rs11778693	26242244	Ma Y	2015-08-05	Sci Rep	Association of chromosome 5q21.3 polymorphisms with the exploratory eye movement dysfunction in schizophrenia.	Exploratory eye movement dysfunction in schizophrenia (responsive search score)	128 Han Chinese ancestry cases	NA	8p21.3	KIAA1967	rs11778693-?	NR	8E-6		1.949	[1.13-2.77] unit decrease	Illumina [498648]	N
756	chr8	22462851	22462852	rs11778693	26242244	Ma Y	2015-08-05	Sci Rep	Association of chromosome 5q21.3 polymorphisms with the exploratory eye movement dysfunction in schizophrenia.	Exploratory eye movement dysfunction in schizophrenia (cognitive search score)	128 Han Chinese ancestry cases	NA	8p21.3	KIAA1967	rs11778693-?	NR	4E-6		1.249	[0.74-1.76] unit decrease	Illumina [498648]	N
756	chr8	22467759	22467760	rs13271626	33888516	Zheng T	2021-04-22	Gut	Genome-wide analysis of 944 133 individuals provides insights into the etiology of haemorrhoidal disease.	Haemorrhoidal disease	218,920 European ancestry cases, 725,213 European ancestry controls	NA	8p21.3	CCAR2	rs13271626-?	0.3295	3E-10		1.03	[1.02-1.04]	Affymetrix, Illumina [8494288] (imputed)	N
756	chr8	22473157	22473158	rs11781149	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	8p21.3	DOK2, XPO7, NPM2, PDLIM2, BIN3, EGR3	rs11781149-?		2E-17				Affymetrix, Illumina [NR] (imputed)	N
756	chr8	22477777	22477778	rs1059592	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	8p21.3	NR	rs1059592-G	0.6463	2E-8		0.0269	[0.017-0.036] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
756	chr8	22477806	22477807	rs1545837	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	8p21.3		rs1545837-?	NR	1E-10				NR [~ 8900000] (imputed)	N
756	chr8	22480518	22480519	rs11780207	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	8p21.3	NR	rs11780207-A	NR	2E-9		0.0158	[0.011-0.021] unit increase	Affymetrix [9000000] (imputed)	N
756	chr8	22480518	22480519	rs11780207	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	8p21.3	NR	rs11780207-A	NR	2E-13		0.0183	[0.013-0.023] unit increase	Affymetrix [9000000] (imputed)	N
756	chr8	22480518	22480519	rs11780207	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	8p21.3	NR	rs11780207-A	NR	2E-13		0.0184	[0.014-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
756	chr8	22492051	22492052	rs6558172	30275891	Das S	2018-09-17	BMC Proc	Family-based genome-wide association of inflammation biomarkers and fenofibrate treatment response in the GOLDN study.	HDL cholesterol and triglyceride levels	821 individuals	NA	8p21.3	Intergenic	rs6558172-?		1E-6				NR [NR]	N
756	chr8	22492102	22492103	rs6558173	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	8p21.3	NR	rs6558173-G	0.6556	7E-10		0.0245	[0.017-0.032] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
756	chr8	22492128	22492129	rs6558174	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	8p21.3	NR	rs6558174-G	0.7027	3E-6	(EA)	0.0362	[0.021-0.051] unit increase	Illumina [~ 11800000] (imputed)	N
756	chr8	22492142	22492143	rs7838146	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	8p21.3	BIN3	rs7838146-T	0.3617	9E-8		0.0021	[0.0013-0.0029] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
756	chr8	22495965	22495966	rs4872526	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	8p21.3	BIN3	rs4872526-T	0.5888	5E-8		0.0019	[0.0013-0.0025] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
756	chr8	22496730	22496731	rs12334545	34387878	Kim KY	2021-08-13	Hepatology	Genome-wide association of individual vulnerability with alcoholic liver disease: A Korean Genome and Epidemiology Study.	Alcohol-associated liver disease in heavy drinkers	1,185 Korean ancestry cases, 2,246 Korean ancestry controls	NA	8p21.3		rs12334545-?	NR	7E-6		1.673	[1.336-2.094]	Affymetrix [7975321] (imputed)	N
756	chr8	22501332	22501333	rs749368	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	8p21.3		rs749368-?	NR	8E-16				NR [~ 8900000] (imputed)	N
756	chr8	22501332	22501333	rs749368	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	8p21.3		rs749368-?	NR	4E-17		0.0361054	[0.027-0.045] unit decrease	Affymetrix [20259828] (imputed)	N
756	chr8	22501829	22501830	rs4242434	26242244	Ma Y	2015-08-05	Sci Rep	Association of chromosome 5q21.3 polymorphisms with the exploratory eye movement dysfunction in schizophrenia.	Exploratory eye movement dysfunction in schizophrenia (cognitive search score)	128 Han Chinese ancestry cases	NA	8p21.3	BIN3	rs4242434-?	NR	8E-6		1.216	[0.7-1.73] unit decrease	Illumina [498648]	N
756	chr8	22519814	22519815	rs7005025	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	8p21.3		rs7005025-C	NR	1E-16		0.0141	[0.011-0.017] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
756	chr8	22525979	22525980	rs2280104	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	8p21.3		rs2280104-C	NR	3E-12		0.0159	[0.011-0.02] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
756	chr8	22525979	22525980	rs2280104	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	8p21.3	BIN3	rs2280104-T	0.3604	1E-8		0.0556	[0.036-0.075] unit increase	NR [7784415] (imputed)	N
756	chr8	22525979	22525980	rs2280104	28892059	Chang D	2017-09-11	Nat Genet	A meta-analysis of genome-wide association studies identifies 17 new Parkinson's disease risk loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	5,851 European ancestry cases, 5,866 European ancestry controls	8p21.3	SORBS3, PDLIM2, C8orf58, BIN3	rs2280104-T	0.367	3E-8		1.07	[1.04-1.09]	Illumina [11933700] (imputed)	N
756	chr8	22529072	22529073	rs4066629	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	8p21.3		rs4066629-?	NR	5E-9				NR [~ 8900000] (imputed)	N
756	chr8	22532278	22532279	rs73212812	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	8p21.3	BIN3	rs73212812-G	0.96986	1E-19		0.0486114	[0.038-0.059] unit decrease	NR [13737936] (imputed)	N
756	chr8	22538383	22538384	rs10104039	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	8p21.3	BIN3, EGR3	rs10104039-T	0.3975	2E-8		5.582	[NR] z score decrease	Affymetrix, Illumina [~ 11000000] (imputed)	N
756	chr8	22538878	22538879	rs4872007	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Superior temporal gyrus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	8p21.3	NR	rs4872007-?		8E-6				Illumina [4322238] (imputed)	N
756	chr8	22539640	22539641	rs12114462	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	28,092 non-Hispanic White ancestry cases, 50,487 non-Hispanic White ancestry controls, 2,233 East Asian ancestry cases, 7,023 East Asian ancestry controls, 2,149 Hispanic/Latino cases, 6,620 Hispanic/Latino controls, 815 African American cases, 2,368 African American controls, 31,852 European ancestry cases, 428,084 European ancestry controls, 757 African ancestry cases, 7,897 African ancestry controls, 1,278 South Asian ancestry cases, 8,571 South Asian ancestry controls, 668 other admixed cases, 7,349 other admixed controls	313,278 European ancestry cases, 2,210,509 European ancestry controls, 7,715 African American cases, 120,390 African American controls, 3,934 East Asian ancestry cases, 104,766 East Asian ancestry controls, 21,408 Latino cases, 425,544 Latino controls, 874 South Asian ancestry cases, 26,037 South Asian ancestry controls		BIN3, EGR3	rs12114462-C	NR	2E-6		1.02	[1.01-1.03]	Affymetrix [9869154] (imputed)	N
757	chr8	22549136	22549137	rs35371013	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	8p21.3	Intergenic	rs35371013-A	0.207	7E-9	(MTAG)	0.0119	[0.008-0.0158] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
757	chr8	22557931	22557932	rs35683183	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	8p21.3	Intergenic	rs35683183-A	0.2079	1E-9	(MTAG)	0.0099	[0.0068-0.013] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
757	chr8	22562351	22562352	rs7823327	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	8p21.3		rs7823327-?	NR	1E-9				NR [~ 8900000] (imputed)	N
757	chr8	22599420	22599421	rs7845221	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	8p21.3	PEBP4	rs7845221-T	0.2546	2E-12		1.064	NR	Affymetrix [9154080] (imputed)	N
757	chr8	22600952	22600953	rs2048651	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	8p21.3		rs2048651-?	NR	2E-26				NR [~ 8900000] (imputed)	N
757	chr8	22608034	22608035	rs74340693	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	8p21.3		rs74340693-A	0.980704	2E-8		0.0807203	[0.052-0.109] unit decrease	NR [11722792] (imputed)	N
757	chr8	22608034	22608035	rs74340693	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	8p21.3		rs74340693-A	0.980704	2E-8		0.0848867	[0.055-0.115] unit increase	NR [11722792] (imputed)	N
757	chr8	22608034	22608035	rs74340693	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	8p21.3		rs74340693-A	0.980704	3E-8		0.0800007	[0.052-0.108] unit increase	NR [11722792] (imputed)	N
757	chr8	22619550	22619551	rs11998649	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral fat	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	8p21.3	PEBP4	rs11998649-A	0.19	7E-6	(overall)			Affymetrix, Illumina [2500000] (imputed)	N
757	chr8	22643706	22643707	rs12155789	24159190	Seppala I	2013-10-24	Eur Heart J	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Asymmetrical dimethylarginine levels	5110 European ancestry individuals	NA	8p21.3	intergenic	rs12155789-G	0.144	1E-6		0.147	[0.088-0.206] unit decrease	Affymetrix, Illumina [10085758] (imputed)	N
758	chr8	22763247	22763248	rs6557600	24839885	Benke KS	2014-02-19	J Am Acad Child Adolesc Psychiatry	A genome-wide association meta-analysis of preschool internalizing problems.	Preschool internalizing problems	3,121 European ancestry individuals, 1,475 children from 1,031 families	NA	8p21.3	NR	rs6557600-A	0.2273	1E-6		0.13	[0.076-0.18] unit decrease	Affymetrix, Illumina [2403520] (imputed)	N
758	chr8	22774288	22774289	rs17679321	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Bipolar disorder	11,897 European ancestry female cases, 15,538 European ancestry female controls, 8,027 European ancestry male cases, 15,009 European ancestry male controls	NA	8p21.3	PEBP4	rs17679321-A	0.0353	4E-7	(male)	0.3363	[0.21-0.47] unit increase	NR [NR] (imputed)	N
758	chr8	22786328	22786329	rs74449481	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		PEBP4	rs74449481-?	NR	2E-8		0.941924	[NR] unit decrease	Affymetrix [NR] (imputed)	N
758	chr8	22789183	22789184	rs2313571	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	8p21.3	PEBP4	rs2313571-T	0.347599	1E-13		0.017299702	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
758	chr8	22789923	22789924	rs6557602	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	8p21.3		rs6557602-T	NR	6E-10		0.0154	[0.011-0.02] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
758	chr8	22789923	22789924	rs6557602	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	8p21.3	PEBP4	rs6557602-T	0.347255	2E-10		0.014867116	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
758	chr8	22795257	22795258	rs3857977	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8p21.3	NR	rs3857977-A	0.344002	1E-16				Affymetrix, Illumina [23472807] (imputed)	N
759	chr8	22835655	22835656	rs145536835	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		PEBP4	rs145536835-?	NR	6E-11	(female)	0.618711	[NR] unit increase	Affymetrix [NR] (imputed)	N
759	chr8	22843996	22843997	rs2466211	28927378	Qian DC	2017-09-19	BMC Genomics	Genome-wide imaging association study implicates functional activity and glial homeostasis of the caudate in smoking addiction.	Caudate activity during reward	106 individuals	NA	8p21.3	NR	rs2466211-C	0.376447	4E-6		0.64253575	[0.39-0.9] unit increase	Illumina [at least 621854] (imputed)	N
759	chr8	22844210	22844211	rs2466212	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	TNF-related apoptosis-inducing ligand receptor 2 levels	21,758 European ancestry individuals	9,173 individuals	8p21.3		rs2466212-T	0.2	3E-20		0.1197	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
759	chr8	22848289	22848290	rs186490423	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	8p21.3	RP11-875O11.1, RHOBTB2, PEBP4	rs186490423-T	0.0092	1E-6		0.205	[0.12-0.29] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
759	chr8	22849516	22849517	rs2042012	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	TNF-related apoptosis-inducing ligand receptor 2 levels	21,758 European ancestry individuals	9,173 individuals	8p21.3		rs2042012-T	0.97	8E-13		0.275	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
759	chr8	22856867	22856868	rs4871843	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		PEBP4	rs4871843-?	NR	3E-9	(male)	1.91999	[NR] unit decrease	Affymetrix [NR] (imputed)	N
759	chr8	22860286	22860287	rs2466181	29860282	Scelsi MA	2018-05-30	Brain	Genetic study of multimodal imaging Alzheimer's disease progression score implicates novel loci.	Alzheimer's disease progression score	944 European ancestry individuals	NA	8p21.3	RHOBTB2	rs2466181-?		7E-7	(corrected for APOE4 status and baseline cortical amyloid)	0.05	[NR] unit decrease	Illumina [5137218] (imputed)	N
759	chr8	22861243	22861244	rs2430810	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	8p21.3	TNFRSF10B	rs2430810-G	0.90421875	8E-6	(TNFRSF10B, 5534_49_2)	0.18509892	[0.1-0.27] unit increase	Illumina [> 1000000] (imputed)	N
759	chr8	22869396	22869397	rs150081341	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		AC107959.1	rs150081341-?	NR	3E-8	(male)	1.58311	[NR] unit decrease	Affymetrix [NR] (imputed)	N
759	chr8	22873532	22873533	rs876435	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	8p21.3		rs876435-A	NR	7E-18		0.0167	[0.013-0.02] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
759	chr8	22873532	22873533	rs876435	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	8p21.3	RHOBTB2	rs876435-G	0.41	3E-12		6.99	z-score increase	Affymetrix [4314223] (imputed)	N
759	chr8	22873532	22873533	rs876435	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	8p21.3	NR	rs876435-A	NR	9E-18		0.0209	[0.016-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
759	chr8	22873532	22873533	rs876435	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	8p21.3	NR	rs876435-G	0.40959	9E-12		0.0073315	[0.005-0.0097] unit increase	Affymetrix [16582621] (imputed)	N
759	chr8	22873532	22873533	rs876435	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	8p21.3	NR	rs876435-G	0.40959	3E-11		0.00756735	[0.0051-0.01] unit increase	Affymetrix [16582614] (imputed)	N
759	chr8	22874336	22874337	rs6557607	28439531	Aslibekyan S	2017-03-08	J Nutr Intermed Metab	Genome- and CD4+ T-cell methylome-wide association study of circulating trimethylamine-N-oxide in the Genetics of Lipid Lowering Drugs and Diet Network (GOLDN).	Plasma trimethylamine N-oxide levels	626 European ancestry individuals	NA	8p21.3	RHOBTB2	rs6557607-?	NR	3E-7		0.66	[0.41-0.91] uM decrease	Affymetrix [9432837] (imputed)	N
759	chr8	22875984	22875985	rs2241260	33549134	Adolphe C	2021-02-06	Genome Med	Genetic and functional interaction network analysis reveals global enrichment of regulatory T cell genes influencing basal cell carcinoma susceptibility.	Basal cell carcinoma	17,416 European ancestry cases, 375,455 European ancestry controls	NA	8p21.3	RHOBTB2	rs2241260-G	0.312488	2E-8		0.06730701	[0.044-0.091] unit decrease	Affymetrix [7260263] (imputed)	N
759	chr8	22876738	22876739	rs2241261	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	8p21.3	NR	rs2241261-T	NR	7E-12		0.0165	[0.012-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
759	chr8	22876738	22876739	rs2241261	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	8p21.3	NR	rs2241261-C	0.475717	2E-14		0.00649164	[0.0048-0.0081] unit increase	Affymetrix [16582909] (imputed)	N
759	chr8	22876738	22876739	rs2241261	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	8p21.3	NR	rs2241261-C	0.475717	2E-11		0.00626147	[0.0044-0.0081] unit increase	Affymetrix [16582965] (imputed)	N
759	chr8	22876738	22876739	rs2241261	28598434	Scelo G	2017-06-09	Nat Commun	Genome-wide association study identifies multiple risk loci for renal cell carcinoma.	Renal cell carcinoma	10,784 European ancestry cases, 20,406 European ancestry controls	3,182 European ancestry cases, 6,301 European ancestry controls	8p21.3	TNFRSF10B, RHOBTB2	rs2241261-T	0.51	6E-9		1.1	1.06-1.13	Illumina [7437091] (imputed)	N
759	chr8	22879733	22879734	rs4871844	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small VLDL	115,082 European ancestry individuals	NA	8p21.3		rs4871844-T	0.657409	3E-8		0.0234279	[0.015-0.032] unit increase	NR [11722792] (imputed)	N
759	chr8	22879733	22879734	rs4871844	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	8p21.3		rs4871844-T	0.657428	3E-9		0.023967	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
759	chr8	22879733	22879734	rs4871844	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	8p21.3		rs4871844-T	0.657409	5E-8		0.022422	[0.014-0.03] unit decrease	NR [11722792] (imputed)	N
759	chr8	22879733	22879734	rs4871844	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	8p21.3	TNFRSF10B	rs4871844-C	0.343388	1E-12		0.016702536	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
759	chr8	22879733	22879734	rs4871844	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	8p21.3	TNFRSF10B	rs4871844-C	0.343354	2E-12		0.016494406	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
759	chr8	22879733	22879734	rs4871844	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	8p21.3	NR	rs4871844-C	0.343797	3E-8		0.0165429	[0.01-0.023] unit increase	Affymetrix [16577313] (imputed)	N
759	chr8	22879733	22879734	rs4871844	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	8p21.3	TNFRSF10B	rs4871844-T	0.6575	4E-8	(TNFRSF10B, 7693_13_3)	0.1433169	[0.092-0.194] unit decrease	Illumina [> 1000000] (imputed)	N
759	chr8	22882292	22882293	rs59296513	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large VLDL	115,082 European ancestry individuals	NA	8p21.3		rs59296513-G	0.679585	8E-9		0.0244633	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
759	chr8	22882292	22882293	rs59296513	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium VLDL	115,082 European ancestry individuals	NA	8p21.3		rs59296513-G	0.679585	2E-8		0.0243916	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
759	chr8	22882292	22882293	rs59296513	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large VLDL	115,082 European ancestry individuals	NA	8p21.3		rs59296513-G	0.679585	4E-9		0.0251505	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
759	chr8	22882292	22882293	rs59296513	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in VLDL	115,082 European ancestry individuals	NA	8p21.3		rs59296513-G	0.679585	2E-8		0.024164	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
759	chr8	22882292	22882293	rs59296513	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large VLDL	115,082 European ancestry individuals	NA	8p21.3		rs59296513-G	0.679585	3E-8		0.0236684	[0.015-0.032] unit increase	NR [11722792] (imputed)	N
759	chr8	22882292	22882293	rs59296513	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large VLDL	115,082 European ancestry individuals	NA	8p21.3		rs59296513-G	0.679585	2E-8		0.0241227	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
759	chr8	22882292	22882293	rs59296513	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large VLDL	115,082 European ancestry individuals	NA	8p21.3		rs59296513-G	0.679585	5E-8		0.0234104	[0.015-0.032] unit increase	NR [11722792] (imputed)	N
759	chr8	22882292	22882293	rs59296513	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycoprotein acetyls levels	115,082 European ancestry individuals	NA	8p21.3		rs59296513-G	0.679585	3E-8		0.0244266	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
759	chr8	22882292	22882293	rs59296513	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large VLDL particles	115,082 European ancestry individuals	NA	8p21.3		rs59296513-G	0.679585	4E-8		0.0234242	[0.015-0.032] unit increase	NR [11722792] (imputed)	N
759	chr8	22882292	22882293	rs59296513	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large VLDL particles	115,082 European ancestry individuals	NA	8p21.3		rs59296513-G	0.679585	3E-8		0.0238738	[0.015-0.032] unit increase	NR [11722792] (imputed)	N
759	chr8	22882292	22882293	rs59296513	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for VLDL particles	115,082 European ancestry individuals	NA	8p21.3		rs59296513-G	0.679585	6E-11		0.0270931	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
759	chr8	22882292	22882293	rs59296513	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TNFRSF10B	5,367 Icelandic ancestry individuals	NA	8p21.3		rs59296513-A	0.3269	4E-13		0.141489	[0.1-0.18] unit increase	Illumina [7506463] (imputed)	N
759	chr8	22885330	22885331	rs2293400	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	TNF-related apoptosis-inducing ligand receptor 2 levels	21,758 European ancestry individuals	9,173 individuals	8p21.3		rs2293400-A	0.66	1E-172		0.2968	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
759	chr8	22885330	22885331	rs2293400	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	TRAIL levels	8,186 Finnish ancestry individuals	NA	8p21.3	NR	rs2293400-T		8E-6		0.074	[0.041-0.107] SD units decrease	NR [10700000] (imputed)	N
759	chr8	22885842	22885843	rs41308110	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Gamma glutamyl transferase levels	437,651 European ancestry individuals	NA	8p21.3		rs41308110-?	NR	1E-11		0.233912	[0.16-0.3] unit increase	NR [9800000] (imputed)	N
759	chr8	22885842	22885843	rs41308110	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Aspartate aminotransferase levels	436,275 European ancestry individuals	NA	8p21.3		rs41308110-?	NR	8E-10		0.231897	[0.16-0.31] unit decrease	NR [9800000] (imputed)	N
759	chr8	22885842	22885843	rs41308110	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Alanine aminotransferase levels	437,724 European ancestry individuals	NA	8p21.3		rs41308110-?	NR	1E-10		0.241912	[0.17-0.32] unit decrease	NR [9800000] (imputed)	N
759	chr8	22901567	22901568	rs4259415	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Skin reflectance (Melanin index)	720 South Asian ancestry individuals		8p21.3	NR	rs4259415-C	NR	5E-6	(conditioned on rs1426654)	0.258643	[0.15-0.37] unit increase	Affymetrix, Illumina [at least 398118] (imputed)	N
759	chr8	22906179	22906180	rs7834008	33987465	Alfradique-Dunham I	2021-01-28	Neurol Genet	Genome-Wide Association Study Meta-Analysis for Parkinson Disease Motor Subtypes.	Parkinson's disease motor subtype (tremor to postural instability/gait difficulty score ratio)	3,212 European ancestry individuals	NA	8p21.3	TNFRSF10B	rs7834008-T	0.79	6E-6		0.14	[0.081-0.199] unit increase	Illumina [14638245] (imputed)	N
759	chr8	22925514	22925515	rs11135694	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	8p21.3		rs11135694-?	NR	5E-9				NR [~ 8900000] (imputed)	N
759	chr8	22926497	22926498	rs11135695	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	8p21.3	TNFRSF10B	rs11135695-A	0.409491	1E-12		0.0165958	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
759	chr8	22926497	22926498	rs11135695	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	8p21.3	TNFRSF10B	rs11135695-A	0.409431	2E-15		0.01787612	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
759	chr8	22926497	22926498	rs11135695	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	8p21.3		rs11135695-?	NR	1E-13				NR [~ 8900000] (imputed)	N
759	chr8	22927016	22927017	rs78905543	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	8p21.3	RP11-875O11.2	rs78905543-T	0.4077	6E-9		0.02095651	[0.014-0.028] unit increase	Affymetrix [~ 2500000] (imputed)	N
760	chr8	22938660	22938661	rs57302454	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Parasitemia in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	8p21.3	NR	rs57302454-?	NR	6E-7				Affymetrix [5486770] (imputed)	N
760	chr8	22941872	22941873	rs72607398	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	8p21.3	TNFRSF10C	rs72607398-G	0.200354	5E-18		0.02419296	[0.019-0.03] unit increase	Affymetrix [93095623] (imputed)	N
760	chr8	22955306	22955307	rs4871846	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	TNF-related apoptosis-inducing ligand receptor 2 levels	21,758 European ancestry individuals	9,173 individuals	8p21.3		rs4871846-C	0.6	5E-14		0.0735	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
760	chr8	22957002	22957003	rs12545733	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	8p21.3	TNFRSF10C	rs12545733-C	0.701	3E-18		0.03424067	[0.027-0.042] unit decrease	Affymetrix [~ 2500000] (imputed)	N
760	chr8	22957002	22957003	rs12545733	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	8p21.3	TNFRSF10C	rs12545733-C	0.7012	3E-9		0.02345243	[0.016-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
760	chr8	22957002	22957003	rs12545733	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	8p21.3	TNFRSF10C	rs12545733-C	0.7011	2E-10		0.02507833	[0.017-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
760	chr8	22957002	22957003	rs12545733	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	8p21.3	TNFRSF10C	rs12545733-C	0.7011	1E-14		0.03023725	[0.023-0.038] unit decrease	Affymetrix [~ 2500000] (imputed)	N
760	chr8	22957011	22957012	rs12547406	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	8p21.3	TNFRSF10C	rs12547406-A	0.379562	3E-11		0.015328248	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
760	chr8	22962347	22962348	rs4077341	26242244	Ma Y	2015-08-05	Sci Rep	Association of chromosome 5q21.3 polymorphisms with the exploratory eye movement dysfunction in schizophrenia.	Exploratory eye movement dysfunction in schizophrenia (responsive search score)	128 Han Chinese ancestry cases	NA	8p21.3	NR	rs4077341-?	NR	8E-6		1.693	[0.98-2.41] unit decrease	Illumina [498648]	N
760	chr8	22964718	22964719	rs4871849	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	8p21.3		rs4871849-A	NR	4E-31		0.0226	[0.019-0.026] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
760	chr8	22964718	22964719	rs4871849	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	8p21.3		rs4871849-G	0.291	1E-17				Affymetrix [10369434] (imputed)	N
760	chr8	22964718	22964719	rs4871849	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	8p21.3	TNFRSF10C	rs4871849-A	0.708239	7E-29		0.027266217	[0.022-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
760	chr8	22964718	22964719	rs4871849	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	8p21.3	TNFRSF10C	rs4871849-A	0.708217	2E-41		0.032963634	[0.028-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
760	chr8	22964718	22964719	rs4871849	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8p21.3	NR	rs4871849-A	0.687038	8E-50				Affymetrix, Illumina [19872809] (imputed)	N
760	chr8	22964718	22964719	rs4871849	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	8p21.3	NR	rs4871849-A	0.707216	1E-51		0.033268	[0.029-0.038] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
760	chr8	22964718	22964719	rs4871849	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	8p21.3		rs4871849-?	NR	3E-46				NR [~ 8900000] (imputed)	N
760	chr8	22966768	22966769	rs12550612	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	8p21.3		rs12550612-A	NR	3E-23		0.025	[0.02-0.03] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
760	chr8	22966768	22966769	rs12550612	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	8p21.3		rs12550612-G	0.177	3E-11				Affymetrix [10369434] (imputed)	N
760	chr8	22966768	22966769	rs12550612	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	8p21.3		rs12550612-G	0.177	2E-11				Affymetrix [10369434] (imputed)	N
760	chr8	22966768	22966769	rs12550612	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	8p21.3	TNFRSF10C	rs12550612-A	0.823645	8E-35		0.03576841	[0.03-0.041] unit decrease	Affymetrix [93095623] (imputed)	N
760	chr8	22966768	22966769	rs12550612	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	8p21.3	TNFRSF10C	rs12550612-A	0.823648	9E-30		0.032949645	[0.027-0.039] unit decrease	Affymetrix [93095623] (imputed)	N
760	chr8	22966768	22966769	rs12550612	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8p21.3	NR	rs12550612-A	0.815735	8E-43				Affymetrix, Illumina [24649327] (imputed)	N
760	chr8	22966768	22966769	rs12550612	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	8p21.3	NR	rs12550612-A	0.821328	1E-41		0.032751	[0.028-0.037] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
760	chr8	22966768	22966769	rs12550612	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8p21.3	NR	rs12550612-A	0.8186	3E-34				Affymetrix, Illumina [23114412] (imputed)	N
760	chr8	22966768	22966769	rs12550612	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	8p21.3	NR	rs12550612-A	0.821991	1E-33		0.030838	[0.026-0.036] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
760	chr8	22966768	22966769	rs12550612	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	8p21.3		rs12550612-?	NR	2E-28				NR [~ 8900000] (imputed)	N
760	chr8	22966768	22966769	rs12550612	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	8p21.3	TNFRSF10C	rs12550612-A	0.8226	1E-11		0.03180158	[0.023-0.041] unit decrease	Affymetrix [~ 2500000] (imputed)	N
760	chr8	22966768	22966769	rs12550612	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	8p21.3	TNFRSF10C	rs12550612-A	0.8225	3E-12		0.03282826	[0.024-0.042] unit decrease	Affymetrix [~ 2500000] (imputed)	N
760	chr8	22966768	22966769	rs12550612	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	8p21.3	TNFRSF10C	rs12550612-A	0.8226	1E-10		0.0303817	[0.021-0.04] unit decrease	Affymetrix [~ 2500000] (imputed)	N
760	chr8	22966768	22966769	rs12550612	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	8p21.3	TNFRSF10C	rs12550612-A	0.8226	1E-10		0.03027516	[0.021-0.04] unit decrease	Affymetrix [~ 2500000] (imputed)	N
760	chr8	22966768	22966769	rs12550612	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	8p21.3	TNFRSF10C	rs12550612-A	0.8225	4E-12		0.03284202	[0.024-0.042] unit decrease	Affymetrix [~ 2500000] (imputed)	N
760	chr8	22966768	22966769	rs12550612	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	8p21.3	TNFRSF10C	rs12550612-A	0.8225	3E-12		0.03288693	[0.024-0.042] unit decrease	Affymetrix [~ 2500000] (imputed)	N
760	chr8	22972271	22972272	rs537005361	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	8p21.3	TNFRSF10C	rs537005361-G	0.00793900000000003	2E-10		0.079444245	[0.055-0.104] unit increase	Affymetrix [93095623] (imputed)	N
760	chr8	22974449	22974450	rs9644063	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	8p21.3		rs9644063-C	NR	4E-19		0.0279	[0.022-0.034] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
760	chr8	22974449	22974450	rs9644063	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	8p21.3	NR	rs9644063-C	NR	3E-10		0.0205	[0.014-0.027] unit increase	Affymetrix [9000000] (imputed)	N
760	chr8	22974449	22974450	rs9644063	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	8p21.3	TNFRSF10C	rs9644063-C	0.822741	2E-19		0.026140524	[0.02-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
760	chr8	22974449	22974450	rs9644063	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8p21.3	NR	rs9644063-C	0.815619	5E-17				Affymetrix, Illumina [19905671] (imputed)	N
760	chr8	22974449	22974450	rs9644063	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	8p21.3	NR	rs9644063-C	0.822008	1E-18		0.023599	[0.018-0.029] SD unit decrease	Affymetrix, Illumina [50036608] (imputed)	N
760	chr8	22993797	22993798	rs6557617	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	8p21.3	TNFRSF10D	rs6557617-C	0.732068	1E-10		0.016345596	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
761	chr8	23080134	23080135	rs1000294	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	8p21.3		rs1000294-A	NR	5E-8		0.0118	[0.0075-0.0161] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
761	chr8	23080828	23080829	rs55650056	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8p21.3	NR	rs55650056-G	0.158799	4E-17				Affymetrix, Illumina [23467995] (imputed)	N
761	chr8	23082970	23082971	rs13278062	32843070	Winkler TW	2020-08-26	BMC Med Genomics	Genome-wide association meta-analysis for early age-related macular degeneration highlights novel loci and insights for advanced disease.	Early age-related macular degeneration	14,034 European ancestry cases, 91,214 European ancestry controls	NA	8p21.3	TNFRSF10A	rs13278062-T	0.52	2E-8		1.08	[1.05-1.11]	Affymetrix, Illumina [11702853] (imputed)	N
761	chr8	23082970	23082971	rs13278062	31872073	Hosoda Y	2019-12-12	Commun Biol	Genome-wide association analyses identify two susceptibility loci for pachychoroid disease central serous chorioretinopathy.	Central serous retinopathy	610 Japanese ancestry cases, 2,850 Japanese ancestry controls	415 Japanese ancestry cases, 6,602 Japanese ancestry controls, 521 European ancestry cases, 3,577 European ancestry controls	8p21.3	LOC389641, TNFRSF10A	rs13278062-T	0.324	1E-9	(Japanese)	1.34	[1.22-1.48]	Illumina [2893743] (imputed)	N
761	chr8	23082970	23082971	rs13278062	31872073	Hosoda Y	2019-12-12	Commun Biol	Genome-wide association analyses identify two susceptibility loci for pachychoroid disease central serous chorioretinopathy.	Central serous retinopathy	610 Japanese ancestry cases, 2,850 Japanese ancestry controls	415 Japanese ancestry cases, 6,602 Japanese ancestry controls, 521 European ancestry cases, 3,577 European ancestry controls	8p21.3	LOC389641, TNFRSF10A	rs13278062-T	0.324	1E-13		1.35	[1.24-1.46]	Illumina [2893743] (imputed)	N
761	chr8	23082970	23082971	rs13278062	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	TRAIL levels	8,186 Finnish ancestry individuals	NA	8p21.3	NR	rs13278062-G		4E-7		0.0801	[0.049-0.111] SD units decrease	NR [10700000] (imputed)	N
761	chr8	23082970	23082971	rs13278062	23455636	Fritsche LG	2013-03-03	Nat Genet	Seven new loci associated with age-related macular degeneration.	Age-related macular degeneration	6,713 European ancestry cases, 48,402 European ancestry contols, 110 Southern Indian ancestry cases, 119 Southern Indian ancestry controls, 827 Japanese ancestry cases, 3,323 Japanese ancestry controls	9,070 European ancestry cases, 7,683 European ancestry contols, 461 East Asian ancestry cases, 547 East Asian ancestry controls	8p21.3	TNFRSF10A	rs13278062-T	0.48	3E-15		1.15	[1.12-1.19]	Affymetrix, Illumina [2442884] (imputed)	N
761	chr8	23082970	23082971	rs13278062	21909106	Arakawa S	2011-09-11	Nat Genet	Genome-wide association study identifies two susceptibility loci for exudative age-related macular degeneration in the Japanese population.	Age-related macular degeneration	827 Japanese ancestry cases, 3,323 Japanese ancestry controls	709 Japanese ancestry cases, 15,571 Japanese ancestry controls	8p21.3	TNFRSF10A, LOC389641	rs13278062-T	0.35	1E-12		1.37	[1.25-1.49]	Illumina [457489]	N
761	chr8	23083500	23083501	rs73224404	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	TNF-related activation-induced cytokine levels	21,758 European ancestry individuals	9,173 individuals	8p21.3		rs73224404-A	0.79	6E-26		0.137	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
761	chr8	23089428	23089429	rs62501136	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	8p21.3		rs62501136-A	NR	1E-10		0.0181	[0.013-0.024] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
761	chr8	23089428	23089429	rs62501136	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	8p21.3	RP11-1149O23.4	rs62501136-A	0.222092	5E-13		0.019554168	[0.014-0.025] unit increase	Affymetrix [93095623] (imputed)	N
761	chr8	23089428	23089429	rs62501136	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	8p21.3	RP11-1149O23.4	rs62501136-A	0.222104	8E-17		0.02240108	[0.017-0.028] unit increase	Affymetrix [93095623] (imputed)	N
761	chr8	23089428	23089429	rs62501136	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	8p21.3	NR	rs62501136-A	0.221444	2E-19		0.020496	[0.016-0.025] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
761	chr8	23097801	23097802	rs6557643	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	8p21.3		rs6557643-G	0.41	3E-20		9.21	z score increase	Affymetrix [9061022] (imputed)	N
761	chr8	23097801	23097802	rs6557643	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	8p21.3	CHMP7	rs6557643-?		3E-12				NR [7428630] (imputed)	N
761	chr8	23101619	23101620	rs7463256	20732625	Neale BM	2010-08-01	J Am Acad Child Adolesc Psychiatry	Meta-analysis of genome-wide association studies of attention-deficit/hyperactivity disorder.	Attention deficit hyperactivity disorder	2,064 European ancestry trios, 896 European ancestry cases, 2,455 European ancestry controls	NA	8p21.3	TNFRSF10A, CHMP7, TNFRSF10D, LOXL2	rs7463256-T	NR	3E-6				Affymetrix, Illumina, Perlegen [1206462] (imputed)	N
761	chr8	23101742	23101743	rs7459962	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	8p21.3	NR	rs7459962-G	NR	4E-9		0.0151	[0.01-0.02] unit increase	Affymetrix [9000000] (imputed)	N
761	chr8	23103657	23103658	rs12542630	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	8p21.3		rs12542630-T	0.41	1E-14		7.72	z score increase	Affymetrix [9061022] (imputed)	N
761	chr8	23104194	23104195	rs2294123	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	8p21.3		rs2294123-T	0.41	3E-26		10.59	z score increase	Affymetrix [9061022] (imputed)	N
761	chr8	23104194	23104195	rs2294123	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	8p21.3	NR	rs2294123-T	0.39	1E-17				NR [9056863] (imputed)	N
761	chr8	23106664	23106665	rs2280934	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	8p21.3	NR	rs2280934-G	0.4112	1E-17				NR [9056863] (imputed)	N
761	chr8	23139435	23139436	rs10091786	32771030	Tangtanatakul P	2020-08-08	Arthritis Res Ther	Meta-analysis of genome-wide association study identifies FBN2 as a novel locus associated with systemic lupus erythematosus in Thai population.	Systemic lupus erythematosus	487 Thai cases, 1,606 Thai controls	405 Thai cases, 1,590 Thai controls	8p21.3	R3HCC1	rs10091786-G	0.1	9E-6		1.535	[NR]	Illumina [421909] (imputed)	N
761	chr8	23150772	23150776	rs72237352	34748635	Miranda JP	2021-11-08	J Clin Endocrinol Metab	Genome-Wide Association Study And Polygenic Risk Scores Of Serum Dheas Levels In A Chilean Children Cohort.	DHEAS levels	788 Hispanic or Latin American individuals	NA	8p21.3	R3HCC1	rs72237352-C	0.279	1E-6		0.07	unit increase	Illumina [5510858] (imputed)	N
761	chr8	23164772	23164773	rs3808520	29760442	Iglesias AI	2018-05-14	Nat Commun	Cross-ancestry genome-wide association analysis of corneal thickness strengthens link between complex and Mendelian eye diseases.	Central corneal thickness	17,803 European ancestry individuals, 8,107 Asian ancestry individuals	NA	8p21.3	LOXL2	rs3808520-C	0.18	2E-8		2.39	[1.57-3.21] unit increase	Affymetrix, Illumina [NR] (imputed)	N
761	chr8	23167179	23167180	rs144719588	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Height	458,235 European ancestry individuals	NA	8p21.3		rs144719588-?	NR	4E-9		0.244918	[0.16-0.33] unit increase	NR [9800000] (imputed)	N
761	chr8	23167352	23167353	rs1063582	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	8p21.3	LOXL2	rs1063582-T	0.2351	1E-16		0.0185	[0.014-0.023] unit increase	Affymetrix [18391927] (imputed)	N
761	chr8	23167352	23167353	rs1063582	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	244,730 European ancestry women	NA	8p21.3	LOXL2	rs1063582-T	0.235	1E-12		0.02	[0.014-0.026] unit increase	Affymetrix [18391927] (imputed)	N
761	chr8	23169086	23169087	rs4872103	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	8p21.3		rs4872103-C	NR	9E-49		0.0213	[0.019-0.024] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
761	chr8	23171491	23171492	rs202243137	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	8p21.3		rs202243137-A	0.26396	5E-24		0.0231313	[0.019-0.028] unit increase	Illumina [13479295] (imputed)	N
761	chr8	23171491	23171492	rs202243137	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	8p21.3	LOXL2	rs202243137-?	NR	1E-24		0.03323504	[0.027-0.04] unit increase	Illumina [27896057] (imputed)	N
761	chr8	23173590	23173591	rs4291276	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	8p21.3		rs4291276-?	NR	6E-51				NR [~ 8900000] (imputed)	N
762	chr8	23230897	23230898	rs6557662	28369058	Folkersen L	2017-04-03	PLoS Genet	Mapping of 79 loci for 83 plasma protein biomarkers in cardiovascular disease.	Blood protein levels in cardiovascular risk	3,394 European ancestry individuals	2,639 individuals	8p21.3	intergenic	rs6557662-A	0.73	1E-8		0.23	unit increase	Illumina [5270624] (imputed)	N
762	chr8	23268408	23268409	rs11784416	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		LOXL2	rs11784416-?	NR	1E-8	(female)	1.37982	[NR] unit decrease	Affymetrix [NR] (imputed)	N
762	chr8	23290768	23290769	rs3736021	29077507	Chen H	2017-10-27	Am J Respir Cell Mol Biol	Multi-ethnic Meta-analysis Identifies RAI1 as a Possible Obstructive Sleep Apnea Related Quantitative Trait Locus in Men.	Obstructive sleep apnea trait (apnea hypopnea index)	677 African American women, 544 African American men, 115 Asian women, 113 Asian men, 1,825 European ancestry women, 3,902 European ancestry men,  7,492 Hispanic women, 5,065 Hispanic men	NA	8p21.3	ENTPD4	rs3736021-T		7E-7		0.065	[NR] unit increase	Affymetrix, Illumina [NR] (imputed)	N
763	chr8	23345525	23345526	rs732563	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	8p21.3	ENTPD4, NKX3-1	rs732563-C	0.503933	1E-11		0.017423	[0.012-0.022] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
763	chr8	23356963	23356964	rs56009477	32769997	Zhou W	2020-08-07	Nat Commun	GWAS of thyroid stimulating hormone highlights pleiotropic effects and inverse association with thyroid cancer.	Thyroid stimulating hormone levels	119,715 European ancestry individuals	NA	8p21.3	ENTPD4, SLC25A37	rs56009477-G	0.15007938252963	1E-21		0.0612	[0.049-0.074] SD decrease	Illumina [22400000] (imputed)	N
763	chr8	23356963	23356964	rs56009477	30367059	Teumer A	2018-10-26	Nat Commun	Genome-wide analyses identify a role for SLC17A4 and AADAT in thyroid hormone regulation.	Thyroid stimulating hormone levels	54,288 European ancestry individuals	up to 22,383 European ancestry individuals	8p21.3	SLC25A37	rs56009477-A	0.84	1E-10		0.05	[0.034-0.066] unit increase	Affymetrix, Illumina [8048941] (imputed)	N
763	chr8	23359279	23359280	rs9644031	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	8p21.2	intergenic	rs9644031-A	0.1608	3E-12		0.03355252	[0.024-0.043] unit increase	Affymetrix [~ 2500000] (imputed)	N
763	chr8	23361923	23361924	rs13272659	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	8p21.2	NR	rs13272659-T	0.17409	7E-15		0.022888727	[0.017-0.029] unit increase	Affymetrix [93095623] (imputed)	N
763	chr8	23361923	23361924	rs13272659	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	8p21.2	NR	rs13272659-T	0.174078	1E-14		0.022697955	[0.017-0.028] unit increase	Affymetrix [93095623] (imputed)	N
763	chr8	23361923	23361924	rs13272659	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	8p21.2		rs13272659-T	0.174092	5E-16		0.02377654	[0.018-0.03] unit increase	Affymetrix [93095623] (imputed)	N
763	chr8	23361923	23361924	rs13272659	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	8p21.2		rs13272659-T	0.174078	5E-16		0.023763513	[0.018-0.03] unit increase	Affymetrix [93095623] (imputed)	N
763	chr8	23364377	23364378	rs34297248	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	8p21.2	NA	rs34297248-A	0.2051	3E-9		0.014	[0.0093-0.0187] unit decrease	NR [~ 27400000] (imputed)	N
763	chr8	23367756	23367757	rs11135740	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	8p21.2	ENTPD4, SLC25A37	rs11135740-?	NR	4E-10		0.01796518	[0.012-0.024] unit decrease	Illumina [27896057] (imputed)	N
763	chr8	23370017	23370018	rs11782370	34488071	Crist RC	2021-08-28	Drug Alcohol Depend	Analysis of genetic and clinical factors associated with buprenorphine response.	Response to buprenorphine in opioid use disorder	1,609 European ancestry individuals	NA	8p21.2		rs11782370-T	NR	7E-6		1.4843	[1.31-1.66]	Affymetrix [NR] (imputed)	N
763	chr8	23372787	23372787	rs34057264	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	8p21.2	intergenic	rs34057264-TTTTG	0.1375	1E-18		0.04552302	[0.035-0.056] unit increase	Affymetrix [~ 2500000] (imputed)	N
763	chr8	23372787	23372787	rs34057264	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	8p21.2	intergenic	rs34057264-TTTTG	0.1374	8E-9		0.0298027	[0.02-0.04] unit increase	Affymetrix [~ 2500000] (imputed)	N
763	chr8	23372913	23372914	rs7814758	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	8p21.2		rs7814758-C	0.381717	3E-15		0.018437948	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
763	chr8	23377160	23377161	rs11784090	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	8p21.2		rs11784090-T	0.135383	3E-15		0.0308986	[0.025-0.037] unit increase	Affymetrix [93095623] (imputed)	N
763	chr8	23377160	23377161	rs11784090	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	8p21.2		rs11784090-T	0.135373	5E-12		0.022351794	[0.016-0.029] unit increase	Affymetrix [93095623] (imputed)	N
763	chr8	23377160	23377161	rs11784090	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	8p21.2	NR	rs11784090-T	0.134336	2E-16		0.02227	[0.017-0.028] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
763	chr8	23377603	23377604	rs36104352	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	8p21.2		rs36104352-C	NR	2E-12		0.0239	[0.017-0.031] unit increase	Affymetrix, Illumina [20528270] (imputed)	N
763	chr8	23377603	23377604	rs36104352	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	8p21.2	NR	rs36104352-C	0.1205	2E-12		0.002472	[0.0018-0.0032] unit increase	Affymetrix [NR] (imputed)	N
763	chr8	23377909	23377910	rs13253974	33536631	Bell S	2021-02-03	Commun Biol	A genome-wide meta-analysis yields 46 new loci associating with biomarkers of iron homeostasis.	Iron status biomarkers (ferritin levels)	246,139 European ancestry individuals	NA	8p21.2	SLC25A37	rs13253974-A	0.323	3E-11		0.024	[0.017-0.032] SD increase	Affymetrix, Illumina [40000000] (imputed)	N
763	chr8	23380742	23380743	rs62503281	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8p21.2	NR	rs62503281-C	0.693638	2E-21				Affymetrix, Illumina [17210439] (imputed)	N
763	chr8	23380742	23380743	rs62503281	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	8p21.2	NR	rs62503281-C	0.693136	3E-22		0.020236	[0.016-0.024] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
763	chr8	23381768	23381769	rs73228208	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	8p21.2		rs73228208-?	NR	5E-33				NR [~ 8900000] (imputed)	N
763	chr8	23383203	23383204	rs7008867	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	8p21.2	SLC25A37	rs7008867-A	0.2518	6E-9	(EA)	0.0238	[0.016-0.032] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
763	chr8	23383203	23383204	rs7008867	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	8p21.2	SLC25A37	rs7008867-A	0.2518	5E-7	(EA, women)	0.0264	[0.016-0.037] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
763	chr8	23385833	23385834	rs721183	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	8p21.2		rs721183-G	NR	1E-16		0.0157	[0.012-0.019] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
763	chr8	23387191	23387192	rs62503282	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	8p21.2	SLC25A37	rs62503282-T	0.137424	1E-34		0.041182283	[0.035-0.048] unit increase	Affymetrix [93095623] (imputed)	N
763	chr8	23388325	23388326	rs11779446	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	8p21.2	NR	rs11779446-?	NR	8E-10				Affymetrix [~ 8270000] (imputed)	N
763	chr8	23389318	23389319	rs2002508	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs2002508-C	0.796225	2E-10		0.0735449	[0.051-0.096] decrease	Affymetrix [11014269] (imputed)	N
763	chr8	23389570	23389571	rs11781222	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	8p21.2		rs11781222-?	NR	3E-10				NR [~ 8900000] (imputed)	N
763	chr8	23389570	23389571	rs11781222	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	8p21.2	NA	rs11781222-T	0.853	3E-12		0.0167	[0.012-0.021] unit increase	NR [~ 27400000] (imputed)	N
763	chr8	23390045	23390046	rs17089329	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	8p21.2	SLC25A37	rs17089329-G	NR	5E-11		0.0231685	[0.016-0.03] unit increase	Affymetrix [321016] (imputed)	N
763	chr8	23391492	23391493	rs11785562	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	8p21.2	SLC25A37	rs11785562-A	NR	3E-8		0.021534	[0.014-0.029] unit increase	Affymetrix [323123] (imputed)	N
763	chr8	23391492	23391493	rs11785562	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	8p21.2	SLC25A37	rs11785562-A	0.200335	3E-8	(females)	0.01513	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
763	chr8	23391492	23391493	rs11785562	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	8p21.2	SLC25A37	rs11785562-A	0.200335	6E-8	(females)	0.0152	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
763	chr8	23392732	23392733	rs3736030	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	8p21.2		rs3736030-T	NR	9E-15		0.017	[0.013-0.021] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
763	chr8	23392732	23392733	rs3736030	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	8p21.2		rs3736030-T	NR	3E-8		0.0125	[0.008-0.017] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
763	chr8	23392732	23392733	rs3736030	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	8p21.2	SLC25A37	rs3736030-T	0.136738	2E-16		0.027198404	[0.021-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
763	chr8	23392732	23392733	rs3736030	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8p21.2	NR	rs3736030-T	0.156335	9E-17				Affymetrix, Illumina [24653286] (imputed)	N
763	chr8	23396829	23396830	rs7842120	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	8p21.2		rs7842120-C	NR	3E-10		0.0135	[0.0094-0.0176] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
763	chr8	23396873	23396874	rs7842144	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	8p21.2		rs7842144-G	NR	2E-10		0.0142	[0.0099-0.0185] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
763	chr8	23397080	23397081	rs10098103	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	8p21.2		rs10098103-C	NR	2E-9		0.0595	[0.04-0.079] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
763	chr8	23397080	23397081	rs10098103	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	8p21.2	SLC25A37	rs10098103-C	0.242332	2E-8		0.06008199	[0.039-0.081] unit decrease	Affymetrix [7288503] (imputed)	N
763	chr8	23399536	23399537	rs12549025	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	8p21.2	SLC25A37	rs12549025-G	0.1638	3E-10		0.03055117	[0.021-0.04] unit increase	Affymetrix [~ 2500000] (imputed)	N
763	chr8	23399889	23399890	rs201643157	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	8p21.2	NR	rs201643157-T	0.25044200000000005	9E-10		0.00927319	[0.0064-0.0122] unit increase	Affymetrix [16578495] (imputed)	N
763	chr8	23400211	23400212	rs4872148	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	8p21.2	SLC25A37	rs4872148-C	NR	3E-6		0.0294649	[0.017-0.042] unit decrease	Illumina [13520550] (imputed)	N
763	chr8	23400588	23400588	rs199787521	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	8p21.2	NR	rs199787521-TTTA	0.239742	9E-20		0.0285428	[0.022-0.035] unit increase	Affymetrix [16580851] (imputed)	N
763	chr8	23400588	23400588	rs199787521	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	8p21.2	NR	rs199787521-TTTA	0.24014999999999997	7E-10		0.0171607	[0.011-0.023] unit increase	Affymetrix [16585745] (imputed)	N
763	chr8	23401394	23401395	rs11783469	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	8p21.2	SLC25A37	rs11783469-T	0.1634	6E-9		0.02831755	[0.019-0.038] unit increase	Affymetrix [~ 2500000] (imputed)	N
763	chr8	23401533	23401534	rs10866828	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	8p21.2		rs10866828-?	NR	2E-8				NR [~ 8900000] (imputed)	N
763	chr8	23402481	23402482	rs7844887	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8p21.2	NR	rs7844887-A	0.245669	8E-13				Affymetrix, Illumina [24588908] (imputed)	N
763	chr8	23403377	23403378	rs11778247	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	8p21.2	SLC25A37	rs11778247-G	0.834343	4E-9		0.024878	[0.017-0.033] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
763	chr8	23404128	23404129	rs192095068	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	8p21.2		rs192095068-A	NR	2E-10		0.0199	[0.014-0.026] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
763	chr8	23404128	23404129	rs192095068	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	8p21.2	NR	rs192095068-A	NR	5E-9		0.0193	[0.013-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
763	chr8	23404784	23404785	rs2280861	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	8p21.2	SLC25A37	rs2280861-A		7E-11		0.173	unit decrease	Affymetrix [at least 2696785] (imputed)	N
763	chr8	23406227	23406228	rs35410017	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	8p21.2		rs35410017-?	NR	3E-10				NR [~ 8900000] (imputed)	N
763	chr8	23406533	23406534	rs7823032	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	8p21.2	NR	rs7823032-G	0.243592	2E-14		0.016338	[0.012-0.021] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
763	chr8	23407177	23407178	rs33963055	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	8p21.2		rs33963055-T	NR	3E-10		0.0162	[0.011-0.021] unit increase	Affymetrix, Illumina [20535842] (imputed)	N
763	chr8	23414821	23414822	rs9644032	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	8p21.2	NR	rs9644032-T	0.367468	7E-18		0.00715357	[0.0055-0.0089] unit increase	Affymetrix [16582909] (imputed)	N
763	chr8	23414821	23414822	rs9644032	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	8p21.2	NR	rs9644032-T	0.368235	1E-11		0.00823178	[0.0057-0.0107] unit increase	Affymetrix [16585854] (imputed)	N
763	chr8	23414821	23414822	rs9644032	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	8p21.2	NR	rs9644032-T	0.367468	3E-11		0.00593687	[0.004-0.0078] unit increase	Affymetrix [16582965] (imputed)	N
763	chr8	23414821	23414822	rs9644032	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	8p21.2	NR	rs9644032-T	0.368235	7E-6		0.00622321	[0.0033-0.0091] unit increase	Affymetrix [16585866] (imputed)	N
763	chr8	23415239	23415240	rs2137304	35115690	Lopera-Maya EA	2022-02-03	Nat Genet	Effect of host genetics on the gut microbiome in 7,738 participants of the Dutch Microbiome Project.	Gut bacterial pathway abundance (PWY.6353..purine.nucleotides.degradation.II..aerobic.)	7,738 European ancestry individuals	NA	8p21.2		rs2137304-G	0.9097729385207808	4E-8		0.15604736	[0.1-0.21] unit decrease	Illumina [5584686] (imputed)	N
763	chr8	23416886	23416887	rs2018490	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin concentration	172,851 European ancestry individuals	NA	8p21.2	SLC25A37, AC051642.1	rs2018490-C	0.5352	2E-16		0.028702	[0.022-0.036] unit increase	Affymetrix [~ 2500000] (imputed)	N
763	chr8	23417090	23417091	rs2004645	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	8p21.2	NR	rs2004645-A	NR	4E-9		0.0189	[0.013-0.025] unit increase	Affymetrix [9000000] (imputed)	N
763	chr8	23418121	23418122	rs1567668	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	8p21.2		rs1567668-A	0.429	2E-35		0.14	[-0.16--0.12] % decrease	Affymetrix [NR] (imputed)	N
763	chr8	23418121	23418122	rs1567668	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	8p21.2	SLC25A37, AC051642.1	rs1567668-G	0.570866	2E-10		0.016538203	[0.011-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
763	chr8	23418443	23418444	rs2942202	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	8p21.2		rs2942202-?	NR	1E-74				NR [~ 8900000] (imputed)	N
763	chr8	23421001	23421002	rs10503728	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	8p21.2	SLC25A37	rs10503728-C	NR	6E-15		0.0314067	[0.023-0.039] unit decrease	Affymetrix [16832071] (imputed)	N
763	chr8	23423668	23423669	rs2942194	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	8p21.2		rs2942194-G	NR	7E-18		0.0174	[0.013-0.021] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
763	chr8	23423668	23423669	rs2942194	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	8p21.2	SLC25A37	rs2942194-G	0.281561	2E-16		0.02361021	[0.018-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
763	chr8	23423668	23423669	rs2942194	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	8p21.2	SLC25A37	rs2942194-G	0.28155	6E-26		0.025864113	[0.021-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
763	chr8	23423668	23423669	rs2942194	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	8p21.2	SLC25A37	rs2942194-G	0.281628	2E-30		0.033117414	[0.027-0.039] unit increase	Affymetrix [93095623] (imputed)	N
763	chr8	23423668	23423669	rs2942194	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8p21.2	NR	rs2942194-A	0.725894	3E-47				Affymetrix, Illumina [22063850] (imputed)	N
763	chr8	23423668	23423669	rs2942194	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	8p21.2	NR	rs2942194-A	0.718927	5E-51		0.031479	[0.027-0.036] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
763	chr8	23423668	23423669	rs2942194	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	8p21.2		rs2942194-?	NR	1E-41				NR [~ 8900000] (imputed)	N
763	chr8	23423668	23423669	rs2942194	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	8p21.2	SLC25A37	rs2942194-G	0.2824	1E-18		0.03469175	[0.027-0.042] unit decrease	Affymetrix [~ 2500000] (imputed)	N
763	chr8	23423668	23423669	rs2942194	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	8p21.2	SLC25A37	rs2942194-G	0.2823	8E-18		0.0337354	[0.026-0.041] unit increase	Affymetrix [~ 2500000] (imputed)	N
763	chr8	23423757	23423758	rs10992	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8p21.2	NR	rs10992-A	0.579576	4E-10				Affymetrix, Illumina [24558453] (imputed)	N
763	chr8	23423757	23423758	rs10992	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	8p21.2	NR	rs10992-A	0.679737	5E-11		0.013022	[0.0091-0.0169] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
763	chr8	23426915	23426919	rs146287838	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	8p21.2	SLC25A37	rs146287838-T	0.4053	4E-13		0.02652898	[0.019-0.034] unit decrease	Affymetrix [~ 2500000] (imputed)	N
763	chr8	23430133	23430133	rs5890117	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	8p21.2	SLC25A37	rs5890117-C	0.580386	1E-31		0.0261327	[0.022-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
763	chr8	23430142	23430142	rs397771682	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	8p21.2		rs397771682-CT	NR	4E-20		0.0185	[0.015-0.022] unit decrease	Affymetrix, Illumina [20536605] (imputed)	N
763	chr8	23431044	23431045	rs1810193	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	8p21.2		rs1810193-C	NR	7E-54		0.031	[0.027-0.035] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
763	chr8	23431044	23431045	rs1810193	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	8p21.2	FP15737	rs1810193-C	0.580914	3E-40		0.0313914	[0.027-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
763	chr8	23431044	23431045	rs1810193	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8p21.2	NR	rs1810193-C	0.564846	2E-63				Affymetrix, Illumina [24246363] (imputed)	N
763	chr8	23431044	23431045	rs1810193	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	8p21.2	NR	rs1810193-C	0.579276	1E-60		0.030417	[0.027-0.034] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
763	chr8	23431044	23431045	rs1810193	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	8p21.2	NR	rs1810193-C	0.579921	3E-38		0.026441	[0.022-0.03] SD unit decrease	Affymetrix, Illumina [50282193] (imputed)	N
763	chr8	23431044	23431045	rs1810193	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8p21.2	NR	rs1810193-C	0.563949	2E-96				Affymetrix, Illumina [20825802] (imputed)	N
763	chr8	23431044	23431045	rs1810193	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	8p21.2	NR	rs1810193-C	0.579922	5E-86		0.038698	[0.035-0.043] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
763	chr8	23432331	23432332	rs8534	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	8p21.2		rs8534-T	NR	2E-33		0.0256	[0.021-0.03] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
763	chr8	23432331	23432332	rs8534	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin	108,054 Japanese ancestry individuals	NA	8p21.2	SLC25A37, NKX3-1	rs8534-?	NR	1E-10		0.03222	[0.022-0.042] unit decrease novel	Illumina [6108953] (imputed)	N
763	chr8	23433510	23433511	rs12545866	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	8p21.2	SLC25A37, FP15737	rs12545866-A	0.597107	2E-9		0.01569573	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
763	chr8	23434334	23434335	rs2942216	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	135,482 East Asian ancestry individuals	NA	8p21.2		rs2942216-A	0.722122	3E-11		0.0269351	[0.019-0.035] unit increase	Illumina [13477028] (imputed)	N
763	chr8	23434334	23434335	rs2942216	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	8p21.2		rs2942216-A	0.72208	1E-14		0.0313104	[0.023-0.039] unit increase	Illumina [13476299] (imputed)	N
763	chr8	23434334	23434335	rs2942216	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8p21.2	NR	rs2942216-A	0.511282	5E-48				Affymetrix, Illumina [21126107] (imputed)	N
763	chr8	23434334	23434335	rs2942216	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	126,151 East Asian ancestry individuals	NA	8p21.2	NR	rs2942216-T	0.277521	1E-12		0.031637	[0.023-0.04] SD units decrease	Affymetrix, Illumina [16289083] (imputed)	N
763	chr8	23434334	23434335	rs2942216	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	119,629 East Asian ancestry individuals	NA	8p21.2	NR	rs2942216-T	0.277508	3E-14		0.034945	[0.026-0.044] SD units decrease	Affymetrix, Illumina [16286228] (imputed)	N
763	chr8	23434334	23434335	rs2942216	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin concentration	108,728 Japanese ancestry individuals	NA	8p21.2	SLC25A37, NKX3-1	rs2942216-?	NR	8E-10		0.02926	[0.02-0.039] unit increase novel	Illumina [6108953] (imputed)	N
763	chr8	23436751	23436752	rs2314686	29423119	Khan S	2017-11-28	Oncotarget	Meta-analysis of three genome-wide association studies identifies two loci that predict survival and treatment outcome in breast cancer.	Survival in breast cancer (estrogen-receptor positive)	2,971 European ancestry individuals, 165 individuals	NA		RHOBTB2, PDLIM2	rs2314686-?		2E-8		1.89	[1.66-2.11]	Illumina [275827] (imputed)	N
763	chr8	23438974	23438975	rs2928679	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	8p21.2	NR	rs2928679-A	0.44	2E-11		1.05	[1.04-1.07]	Illumina [20370935] (imputed)	N
763	chr8	23450509	23450510	rs950893	29495898	Peterson RE	2018-03-02	Am J Psychiatry	Molecular Genetic Analysis Subdivided by Adversity Exposure Suggests Etiologic Heterogeneity in Major Depression.	Major depressive disorder (unexposed to adversity)	3,139 Han Chinese ancestry cases, 3,832 Han Chinese ancestry controls	NA	8p21.2	SLC25A37	rs950893-G	0.28	7E-9		5.79	z score decrease	NR [4313801] (imputed)	N
763	chr8	23450509	23450510	rs950893	29495898	Peterson RE	2018-03-02	Am J Psychiatry	Molecular Genetic Analysis Subdivided by Adversity Exposure Suggests Etiologic Heterogeneity in Major Depression.	Major depressive disorder	4,785 Han Chinese ancestry cases, 4,814 Han Chinese ancestry controls	NA	8p21.2	SLC25A37	rs950893-G	0.28	2E-6		4.76	z score decrease	NR [4313801] (imputed)	N
763	chr8	23450509	23450510	rs950893	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	8p21.2	intergenic	rs950893-G	0.3311	8E-33		0.04502189	[0.038-0.052] unit increase	Affymetrix [~ 2500000] (imputed)	N
763	chr8	23456633	23456634	rs73671497	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	8p21.2	NR	rs73671497-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
764	chr8	23466465	23466466	rs1858401	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	8p21.2		rs1858401-T	NR	2E-7		1.096	[1.059-1.134]	Affymetrix [7846216] (imputed)	N
764	chr8	23466983	23466984	rs4614003	28139693	Hoffmann TJ	2017-01-31	Nat Commun	Genome-wide association study of prostate-specific antigen levels identifies novel loci independent of prostate cancer.	Prostate-specific antigen levels (conditioned on lead SNPs)	28,503 European ancestry individuals	2,716 Latino individuals, 2,518 East Asian ancestry individuals, 1,585 African American individuals, 6,193 European ancestry individuals (later diagnosed with prostate cancer)	8p21.2	SLC25A37	rs4614003-?	0.296	1E-15	(conditional on Round 1 SNPs)	0.05	unit increase	Affymetrix [10109774] (imputed)	N
764	chr8	23470784	23470785	rs6557704	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	8p21.2	NR	rs6557704-A	NR	2E-18		1.072	[1.06-1.09]	Affymetrix, Illumina [29235255] (imputed)	N
764	chr8	23474414	23474415	rs7819881	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8p21.2	NR	rs7819881-A	0.700278	7E-29				Affymetrix, Illumina [24332387] (imputed)	N
764	chr8	23475241	23475242	rs28370549	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	8p21.2	NR	rs28370549-G	0.668856	2E-29		0.02238	[0.018-0.026] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
764	chr8	23475241	23475242	rs28370549	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	8p21.2		rs28370549-?	NR	3E-28				NR [~ 8900000] (imputed)	N
764	chr8	23495279	23495284	rs71210632	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	8p21.2	RP11-583M2.2	rs71210632-G	0.665372	3E-9		0.014146583	[0.0095-0.0188] unit decrease	Affymetrix [93095623] (imputed)	N
764	chr8	23496545	23496546	rs6557705	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	8p21.2		rs6557705-?	NR	1E-9				NR [~ 8900000] (imputed)	N
764	chr8	23507378	23507379	rs147410223	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	8p21.2	Intergenic	rs147410223-G	0.766	2E-6	(AA)	0.036	NR unit increase	Illumina [NR] (imputed)	N
764	chr8	23507378	23507379	rs147410223	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	8p21.2	Intergenic	rs147410223-G	0.783	7E-7	(AA)	0.021	unit increase	Illumina [NR] (imputed)	N
764	chr8	23522451	23522452	rs7821330	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Prostate cancer	10,792 European ancestry cases, 410,350 European ancestry controls	NA	8p21.2		rs7821330-C	NR	3E-26		1.1675	NR	Affymetrix [7846216] (imputed)	N
764	chr8	23522850	23522851	rs995432	34012061	Sipeky C	2021-05-19	Prostate Cancer Prostatic Dis	Novel prostate cancer susceptibility gene SP6 predisposes patients to aggressive disease.	Prostate cancer	2,738 Finnish ancestry cases, 2,400 Finnish ancestry controls	NA	8p21.2	RP11-583M2.2, NKX3-1	rs995432-G	0.45	8E-16		1.38	[1.28-1.50] unit increase	Illumina [185478]	N
764	chr8	23525210	23525211	rs4872174	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Prostate cancer	5,672 East Asian ancestry cases, 84,660 East Asian ancestry controls	NA	8p21.2		rs4872174-T	0.634921601	4E-36		0.26981884	[0.23-0.31] unit decrease	Illumina [13406905] (imputed)	N
764	chr8	23525210	23525211	rs4872174	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Prostate cancer	5,408 Japanese ancestry cases, 103,939 Japanese ancestry controls	NA	8p21.2		rs4872174-T	0.634036147	2E-35		0.7677914	[0.736451169-0.800465272]	Illumina [8919992] (imputed)	N
764	chr8	23525542	23525543	rs13265330	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Prostate cancer	11,599 European ancestry cases, 199,628 European ancestry controls, 5,672 East Asian ancestry cases, 84,660 East Asian ancestry controls	NA	8p21.2		rs13265330-T	NR	6E-55		0.1875	[0.16-0.21] unit decrease	Affymetrix, Illumina [25775424] (imputed)	N
764	chr8	23526462	23526463	rs1512268	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Prostate cancer	7,438 White British ancestry cases, 118,206 White British ancestry controls	NA	8p21.2		rs1512268-?	NR	1E-17		1.15987	[1.13-1.19]	NR [680312]	N
764	chr8	23526462	23526463	rs1512268	33293427	Emami NC	2020-12-08	Cancer Res	A large-scale association study detects novel rare variants, risk genes, functional elements, and polygenic architecture of prostate cancer susceptibility.	Prostate cancer	14,113 European ancestry cases, 194,140 European ancestry controls	NA	8p21.2	NR	rs1512268-A	NR	2E-21		1.15	NR	Affymetrix [at least 232408] (imputed)	N
764	chr8	23526462	23526463	rs1512268	31562322	Takata R	2019-09-27	Nat Commun	12 new susceptibility loci for prostate cancer identified by genome-wide association study in Japanese population.	Prostate cancer	5,088 Japanese ancestry cases, 10,682 Japanese ancestry controls	4,818 Japanese ancestry cases, 73,261 Japanese ancestry controls	8p21.2	NKX3.1	rs1512268-T	0.37	3E-24		1.2886598	NR	Illumina [7742602] (imputed)	N
764	chr8	23526462	23526463	rs1512268	26443449	Wang M	2015-10-07	Nat Commun	Large-scale association analysis in Asians identifies new susceptibility loci for prostate cancer.	Prostate cancer	3,000 East Asian ancestry cases, 4,394 East Asian ancestry controls	3,605 East Asian ancestry cases, 3,919 East Asian ancestry controls	8p21.2	NKX3-1	rs1512268-T	NR	1E-13		1.3157895	[NR]	Illumina [4550396] (imputed)	N
764	chr8	23526462	23526463	rs1512268	26034056	Hoffmann TJ	2015-06-01	Cancer Discov	A large multiethnic genome-wide association study of prostate cancer identifies novel risk variants and substantial ethnic differences.	Prostate cancer	6,406 European ancestry cases, 601 African American cases, 288 East Asian ancestry cases, 488 Latino cases30,866 European ancestry controls, 1,650 African American controls, 2,938 East Asian ancestry controls, 3,141 Latino controls	4,599 European ancestry cases, 2,265 African American cases, 2,940 European ancestry controls, 2,414 African American controls	8p21.2	NR	rs1512268-A	0.43	4E-15		1.17	[1.12-1.22]	Affymetrix [up to 19977088] (imputed)	N
764	chr8	23526462	23526463	rs1512268	26034056	Hoffmann TJ	2015-06-01	Cancer Discov	A large multiethnic genome-wide association study of prostate cancer identifies novel risk variants and substantial ethnic differences.	Prostate cancer	6,406 European ancestry cases, 601 African American cases, 288 East Asian ancestry cases, 488 Latino cases30,866 European ancestry controls, 1,650 African American controls, 2,938 East Asian ancestry controls, 3,141 Latino controls	4,599 European ancestry cases, 2,265 African American cases, 2,940 European ancestry controls, 2,414 African American controls	8p21.2	NR	rs1512268-A	0.43	2E-12	(European)	1.17	[1.12-1.22]	Affymetrix [up to 19977088] (imputed)	N
764	chr8	23526462	23526463	rs1512268	22923026	Cheng I	2012-08-24	Cancer Epidemiol Biomarkers Prev	Evaluating genetic risk for prostate cancer among Japanese and Latinos.	Prostate cancer	1,033 Japanese ancestry cases, 1,042 Japanese ancestry controls, 1,043 Latino cases, 1,057 Latino controls	1,583 Japanese ancestry cases, 3,386 Japanese ancestry  controls, 1,854 European ancestry cases, 3,748 European ancestry controls	8p21.2	NR	rs1512268-T	0.36	5E-6	(Japanese)	1.35	[1.19-1.53]	Illumina [528023]	N
764	chr8	23526462	23526463	rs1512268	20676098	Takata R	2010-08-01	Nat Genet	Genome-wide association study identifies five new susceptibility loci for prostate cancer in the Japanese population.	Prostate cancer	1,583 Japanese ancestry cases, 3,386 Japanese ancestry controls	3,001 Japanese ancestry cases, 5,415 Japanese ancestry controls	8p21.2	NKX3.1	rs1512268-?	NR	4E-11				Illumina [510687]	N
764	chr8	23526462	23526463	rs1512268	19767753	Eeles RA	2009-09-20	Nat Genet	Identification of seven new prostate cancer susceptibility loci through a genome-wide association study.	Prostate cancer	1,854 European ancestry cases, 1,894 European ancestry controls	19,879 cases and 18,761 controls of European, East Asian, African American, Latino, and Hawaiian ancestry	8p21.2	NKX3.1	rs1512268-?	0.45	3E-30		1.18	[1.14-1.22]	Illumina [541129]	N
764	chr8	23528510	23528511	rs13272392	28139693	Hoffmann TJ	2017-01-31	Nat Commun	Genome-wide association study of prostate-specific antigen levels identifies novel loci independent of prostate cancer.	Prostate-specific antigen levels	28,503 European ancestry individuals	2,716 Latino individuals, 2,518 East Asian ancestry individuals, 1,585 African American individuals, 6,193 European ancestry individuals (later diagnosed with prostate cancer), 5,603 European ancestry individuals	8p21.2	NKX3-1	rs13272392-T	0.43	4E-34		0.0685113	[0.057-0.08] unit increase	Affymetrix [10109774] (imputed)	N
764	chr8	23529520	23529521	rs1160267	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 91,972 European ancestry controls	6,852 European ancestry cases, 193,117 European ancestry controls	8p21.2	NR	rs1160267-G	0.419439506	1E-16		1.1532314	[1.11-1.19]	Affymetrix, Illumina [20400945] (imputed)	N
764	chr8	23529520	23529521	rs1160267	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	8p21.2	NR	rs1160267-G	NR	9E-123		1.168	[1.15-1.18]	Affymetrix, Illumina [29235255] (imputed)	N
764	chr8	23529520	23529521	rs1160267	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	8,611 East Asian ancestry cases, 18,809 East Asian ancestry controls	NA	8p21.2	NR	rs1160267-G	0.337	2E-40		1.27	[1.23-1.32]	Affymetrix, Illumina [10186136] (imputed)	N
764	chr8	23529520	23529521	rs1160267	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	10,368 African ancestry cases, 10,986 African ancestry controls	NA	8p21.2	NR	rs1160267-G	0.704	1E-12		1.177	[1.13-1.23]	Affymetrix, Illumina [18877980] (imputed)	N
764	chr8	23534017	23534018	rs10503733	32986714	Fiorica PN	2020-09-28	PLoS One	Multi-ethnic transcriptome-wide association study of prostate cancer.	Prostate cancer	1,106 Japanese American cases, 1,093 Japanese American controls	NA	8p21.2	NKX3-1, SINHCAFP3	rs10503733-?		3E-6		1.3426423		Illumina [4623264] (imputed)	N
764	chr8	23534017	23534018	rs10503733	22923026	Cheng I	2012-08-24	Cancer Epidemiol Biomarkers Prev	Evaluating genetic risk for prostate cancer among Japanese and Latinos.	Prostate cancer	1,033 Japanese ancestry cases, 1,042 Japanese ancestry controls, 1,043 Latino cases, 1,057 Latino controls	1,583 Japanese ancestry cases, 3,386 Japanese ancestry  controls, 1,854 European ancestry cases, 3,748 European ancestry controls	8p21.2	NR	rs10503733-T	NR	8E-8	(Japanese and Latin American)	1.29	NR	Illumina [528023]	N
764	chr8	23565783	23565784	rs17782111	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8p21.2	RP11-175E9.1	rs17782111-G	NR	2E-9		0.0201248	[0.014-0.027] unit decrease	Affymetrix [321114] (imputed)	N
764	chr8	23567462	23567463	rs11989744	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-hip ratio	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	8p21.2	NKX3-1	rs11989744-T	0.24	5E-9	(EA, women)	0.0355	[0.024-0.047] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
764	chr8	23570210	23570211	rs57291069	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	8p21.2	RP11-175E9.1	rs57291069-T	NR	7E-15		0.0256505	[0.019-0.032] unit decrease	Affymetrix [319769] (imputed)	N
764	chr8	23570210	23570211	rs57291069	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	8p21.2	RP11-175E9.1	rs57291069-T	NR	5E-15		0.0258634	[0.019-0.032] unit decrease	Affymetrix [319769] (imputed)	N
764	chr8	23570210	23570211	rs57291069	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	8p21.2	RP11-175E9.1	rs57291069-T	NR	5E-10		0.0207042	[0.014-0.027] unit decrease	Affymetrix [321169] (imputed)	N
764	chr8	23571806	23571807	rs17089546	30514930	Mukherjee S	2018-12-04	Mol Psychiatry	Genetic data and cognitively defined late-onset Alzheimer's disease subgroups.	Alzheimer's disease with multiple cognitive domain impairments	Up to 248 European ancestry cases, 3,447 European ancestry controls	NA	8p21.2	NR	rs17089546-A	0.25	3E-6		1.86	[1.61-2.11]	NR [up to 6398204] (imputed)	N
764	chr8	23574846	23574847	rs2033788	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	8p21.2	RP11-175E9.1	rs2033788-G	NR	5E-9		0.0171499	[0.011-0.023] unit decrease	Affymetrix [319769] (imputed)	N
764	chr8	23574846	23574847	rs2033788	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	8p21.2	RP11-175E9.1	rs2033788-G	NR	5E-9		0.0171429	[0.011-0.023] unit decrease	Affymetrix [319769] (imputed)	N
764	chr8	23584225	23584226	rs13273073	22310353	Man M	2012-02-07	Pharmacogenomics J	Beyond single-marker analyses: mining whole genome scans for insights into treatment responses in severe sepsis.	Treatment response for severe sepsis	1,446 individuals	NA	8p21.2	NKX2-6	rs13273073-?	NR	7E-6	(GT vs. not GT)			Illumina [856627]	N
765	chr8	23593299	23593300	rs10101061	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	8p21.2	NKX2-6	rs10101061-T	0.7485999999999999	2E-8	(EA)	0.0295	[0.019-0.04] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
765	chr8	23593299	23593300	rs10101061	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	8p21.2	NKX2-6	rs10101061-T	0.7485999999999999	3E-7	(EA)	0.03	[0.019-0.041] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
765	chr8	23593299	23593300	rs10101061	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	8p21.2	NKX2-6	rs10101061-T	0.7484	1E-9	(EA, women)	0.0444	[0.03-0.059] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
765	chr8	23593299	23593300	rs10101061	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	8p21.2	NKX2-6	rs10101061-?	0.7485999999999999	1E-7	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
765	chr8	23595939	23595940	rs7004766	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	8p21.2	NKX2-6	rs7004766-T	0.7485	3E-12	(women)	0.0439	[0.032-0.056] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
765	chr8	23595939	23595940	rs7004766	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	8p21.2	NKX2-6	rs7004766-T	0.7485	2E-7		0.026	[0.016-0.036] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
765	chr8	23595939	23595940	rs7004766	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	8p21.2	NKX2-6	rs7004766-T	0.7485	2E-11	(EA, women)	0.0436	[0.031-0.056] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
765	chr8	23595939	23595940	rs7004766	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	8p21.2	NKX2-6	rs7004766-T	0.7485	7E-7		0.0293	[0.018-0.041] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
765	chr8	23595939	23595940	rs7004766	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	8p21.2	NKX2-6	rs7004766-T	0.7483	1E-9	(women)	0.0445	[0.03-0.059] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
765	chr8	23595939	23595940	rs7004766	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	8p21.2	NKX2-6	rs7004766-?	0.7485	4E-7				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
765	chr8	23595939	23595940	rs7004766	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	8p21.2	NKX2-6	rs7004766-?	0.7485	2E-9	(women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
765	chr8	23595939	23595940	rs7004766	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	8p21.2	NKX2-6	rs7004766-?	0.7485	2E-9	(EA, women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
765	chr8	23603323	23603324	rs7830933	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	8p21.2	NKX2-6	rs7830933-A	0.7625	4E-9	(EA, women)	0.0333	[0.022-0.044] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
765	chr8	23603323	23603324	rs7830933	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	8p21.2	NKX2-6	rs7830933-A	0.7625	1E-6	(EA)	0.0211	[0.012-0.03] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
765	chr8	23603323	23603324	rs7830933	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	8p21.2	NKX2-6	rs7830933-A	0.761	1E-7	(EA,women)	0.0339	[0.021-0.046] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
765	chr8	23603323	23603324	rs7830933	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	8p21.2	NKX2-6	rs7830933-?	0.7625	4E-8	(EA, women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
765	chr8	23603323	23603324	rs7830933	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI in non-smokers	75,379 European ancestry women, 45,811 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	8p21.2	NKX2-6	rs7830933-A	0.7569	4E-7	(women)	0.0202	[0.012-0.028] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
765	chr8	23603323	23603324	rs7830933	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (joint analysis main effects and smoking interaction)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	8p21.2	NKX2, 6	rs7830933-A	0.7569	2E-6	(women)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
765	chr8	23603323	23603324	rs7830933	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	8p21.2	NKX2-6	rs7830933-A	0.7569	1E-11	(women)	0.0357	[0.025-0.046] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
765	chr8	23603323	23603324	rs7830933	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in non-smokers	77,113 European ancestry women, 47,319 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	8p21.2	NKX2-6	rs7830933-A	0.7571	5E-10	(women)	0.0354	[0.024-0.047] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
765	chr8	23603323	23603324	rs7830933	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	8p21.2	NKX2-6	rs7830933-A	0.7571	3E-10	(women)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
765	chr8	23603323	23603324	rs7830933	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	8p21.2	NKX2-6	rs7830933-A	0.7571	1E-10	(women)	0.0332	[0.023-0.043] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
765	chr8	23603323	23603324	rs7830933	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex x age interaction (4df test)	up to 43,776 European ancestry men aged <50, up to 50,526 European ancestry women aged <50, up to 69,944 European ancestry men aged >50, up to 88,129 European ancestry women aged >50	NA	8p21.2	NKX2-6, STC1, NKX3-1, CHMP7, R3HCC1, LOXL2, LOC100507156, SLC25A37	rs7830933-A	0.766	5E-11				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
765	chr8	23603323	23603324	rs7830933	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex interaction	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	8p21.2	NKX2-6	rs7830933-A	0.77	5E-8				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
765	chr8	23603323	23603324	rs7830933	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI (age >50)	up to 69,944 European ancestry men, up to 88,129 European ancestry women	NA	8p21.2	NKX2-6, STC1, NKX3-1, CHMP7, R3HCC1, LOXL2, LOC100507156, SLC25A37	rs7830933-A	0.766227574005384	3E-8	(women)	0.0364	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
765	chr8	23603323	23603324	rs7830933	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI (age <50)	up to 43,776 European ancestry men, up to 50,526 European ancestry women	NA	8p21.2	NKX2-6, STC1, NKX3-1, CHMP7, R3HCC1, LOXL2, LOC100507156, SLC25A37	rs7830933-A	0.77	3E-6	(women)	0.039	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
765	chr8	23603323	23603324	rs7830933	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	8p21.2	NR	rs7830933-A	0.766227574005384	8E-7		0.01889321	units increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
765	chr8	23603323	23603324	rs7830933	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	8p21.2	NKX2-6, STC1, NKX3-1, CHMP7, R3HCC1, LOXL2, LOC100507156, SLC25A37	rs7830933-A	0.766227	8E-7		0.0364	units increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
765	chr8	23603323	23603324	rs7830933	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	8p21.2	NKX2, 6	rs7830933-A	0.7673	7E-8	(EA)	0.0217	[0.014-0.03] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
765	chr8	23603323	23603324	rs7830933	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	8p21.2	NKX2, 6	rs7830933-A	0.7668	1E-12	(EA, women)	0.0374	[0.027-0.048] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
765	chr8	23603323	23603324	rs7830933	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	8p21.2	NKX2, 6	rs7830933-A	0.7646	3E-6		0.0182	[0.011-0.026] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
765	chr8	23603323	23603324	rs7830933	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	8p21.2	NKX2, 6	rs7830933-A	0.7644	1E-11	(women)	0.0349	[0.025-0.045] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
765	chr8	23603323	23603324	rs7830933	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	8p21.2	NKX2-6	rs7830933-A	0.7677	9E-6	(EA)	0.0174	[0.0098-0.025] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
765	chr8	23603323	23603324	rs7830933	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	8p21.2	NKX2-6	rs7830933-A	0.7677	2E-10	(EA,women)	0.0328	[0.023-0.043] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
765	chr8	23610638	23610639	rs9644033	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	8p21.2	RP11-175E9.1	rs9644033-T	NR	3E-29		0.0371808	[0.031-0.044] unit decrease	Affymetrix [319769] (imputed)	N
765	chr8	23610638	23610639	rs9644033	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	8p21.2	RP11-175E9.1	rs9644033-T	NR	5E-29		0.0370336	[0.031-0.044] unit decrease	Affymetrix [319769] (imputed)	N
765	chr8	23610638	23610639	rs9644033	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8p21.2	RP11-175E9.1	rs9644033-T	NR	1E-17		0.0284941	[0.022-0.035] unit decrease	Affymetrix [321114] (imputed)	N
765	chr8	23610638	23610639	rs9644033	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	8p21.2	RP11-175E9.1	rs9644033-T	NR	5E-18		0.0289442	[0.022-0.035] unit decrease	Affymetrix [321169] (imputed)	N
765	chr8	23610638	23610639	rs9644033	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	8p21.2	NR	rs9644033-?	NR	2E-14				Affymetrix [~ 8270000] (imputed)	N
765	chr8	23610638	23610639	rs9644033	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	8p21.2	NR	rs9644033-A	0.76	1E-23		0.022	[0.018-0.026] unit increase	Affymetrix [2446094] (imputed)	N
765	chr8	23610638	23610639	rs9644033	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	8p21.2	NR	rs9644033-A	0.76	5E-8				Affymetrix [2446094] (imputed)	N
765	chr8	23610638	23610639	rs9644033	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	8p21.2	NR	rs9644033-A	0.7545	3E-26		0.0222	[0.018-0.026] unit increase	NR [~ 27400000] (imputed)	N
765	chr8	23610638	23610639	rs9644033	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	8p21.2	NA	rs9644033-A	0.7545	2E-19		0.0188	[0.015-0.023] unit increase	NR [~ 27400000] (imputed)	N
765	chr8	23610638	23610639	rs9644033	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	8p21.2	NR	rs9644033-A	0.7545	2E-19		0.0188	[0.015-0.023] unit increase	NR [~ 27400000] (imputed)	N
765	chr8	23610798	23610799	rs1561105	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	8p21.2	NR	rs1561105-?	NR	4E-22				Affymetrix [~ 8270000] (imputed)	N
765	chr8	23610798	23610799	rs1561105	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	8p21.2		rs1561105-?	NR	2E-19				NR [~ 8900000] (imputed)	N
765	chr8	23615444	23615445	rs13258890	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting insulin	151,013 European ancestry individuals	NA	8p21.2	NKX2-6	rs13258890-T	0.7651	3E-8		0.0128	[0.0079-0.0177] unit increase	Affymetrix, Illumina [32635793] (imputed)	N
765	chr8	23615778	23615779	rs10097518	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	8p21.2	RP11-175E9.1	rs10097518-G	NR	6E-9		0.0166283	[0.011-0.022] unit decrease	Affymetrix [319769] (imputed)	N
765	chr8	23615778	23615779	rs10097518	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	8p21.2	RP11-175E9.1	rs10097518-G	NR	7E-9		0.0166271	[0.011-0.022] unit decrease	Affymetrix [319769] (imputed)	N
765	chr8	23636280	23636281	rs218869	24009623	Jiang J	2013-08-30	Front Genet	Genome-wide association study for biomarker identification of Rapamycin and Everolimus using a lymphoblastoid cell line system.	Response to mTOR inhibitor (everolimus)	87 European ancestry individuals, 91 African American individuals, 94 Han Chinese ancestry individuals	NA	8p21.2	intergenic	rs218869-?	NR	4E-6		0.29	[NR] unit increase	Affymetrix, Illumina [1348798]	N
765	chr8	23640443	23640444	rs12677356	28360221	Boger CA	2017-03-30	J Am Soc Nephrol	NFAT5 and SLC4A10 Loci Associate with Plasma Osmolality.	Blood osmolality (transformed sodium)	45,889 European ancestry individuals, up to 8,765 Asian Indian ancestry individuals, up to 7,215 African ancestry individuals	17,637 European ancestry individuals	8p21.2	STC1, SLC25A37	rs12677356-T	0.05	5E-6	(EA)	0.08	unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
765	chr8	23643488	23643489	rs310272	24839885	Benke KS	2014-02-19	J Am Acad Child Adolesc Psychiatry	A genome-wide association meta-analysis of preschool internalizing problems.	Preschool internalizing problems	3,121 European ancestry individuals, 1,475 children from 1,031 families	NA	8p21.2	NR	rs310272-C	0.3718	6E-6		0.1	[0.06-0.15] unit increase	Affymetrix, Illumina [2403520] (imputed)	N
765	chr8	23659510	23659511	rs310291	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	8p21.2		rs310291-?	NR	6E-9				NR [~ 8900000] (imputed)	N
765	chr8	23659510	23659511	rs310291	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	8p21.2	NR	rs310291-A	0.4075	6E-8	(EA)	0.0341	[0.022-0.046] unit increase	Illumina [~ 11800000] (imputed)	N
765	chr8	23664631	23664632	rs60911071	31826910	Lu Y	2019-12-11	Cancer Epidemiol Biomarkers Prev	Identification of novel loci and new risk variant in known loci for colorectal cancer risk in East Asians.	Colorectal cancer	23,572 East Asian ancestry cases, 48,700 East Asian ancestry controls	58,131 European ancestry cases, 67,347 European ancestry controls	8p21.2		rs60911071-G	NR	6E-8		1.07	[1.04-1.09]	Affymetrix, Illumina [up to 47000000] (imputed)	N
765	chr8	23664631	23664632	rs60911071	31826910	Lu Y	2019-12-11	Cancer Epidemiol Biomarkers Prev	Identification of novel loci and new risk variant in known loci for colorectal cancer risk in East Asians.	Colorectal cancer	23,572 East Asian ancestry cases, 48,700 East Asian ancestry controls	58,131 European ancestry cases, 67,347 European ancestry controls	8p21.2		rs60911071-G	0.6371	1E-6	(East Asian)	1.07	[1.04-1.10]	Affymetrix, Illumina [up to 47000000] (imputed)	N
765	chr8	23694944	23694945	rs57721847	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	8p21.2	NR	rs57721847-?	NR	5E-8				Illumina [7760689] (imputed)	N
765	chr8	23714991	23714992	rs3758086	26831199	Pattaro C	2016-01-21	Nat Commun	Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function.	Glomerular filtration rate (creatinine)	133,413 European ancestry individuals	42,166 European ancestry individuals, up to 16,471 African ancestry individuals, up to 42,296 Asian ancestry individuals	8p21.2	STC1	rs3758086-A	0.42	2E-15	(EA)	0.0071	[0.0053-0.0089] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
765	chr8	23715870	23715871	rs36071802	28452372	Gorski M	2017-04-28	Sci Rep	1000 Genomes-based meta-analysis identifies 10 novel loci for kidney function.	Glomerular filtration rate (creatinine)	110,517 European ancestry individuals		8p21.2	STC1	rs36071802-T	NR	1E-15		0.0079	[0.0061-0.0097] unit increase	Affymetrix, Illumina [up to 10971307] (imputed)	N
765	chr8	23719570	23719571	rs7007761	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	8p21.2	STC1	rs7007761-T	0.385	1E-33		0.0042	[0.0036-0.0048] unit decrease	Affymetrix [NR] (imputed)	N
765	chr8	23719570	23719571	rs7007761	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	8p21.2	STC1, ADAM28	rs7007761-C	0.7049	3E-34		12.201	NR z score increase	Illumina [26237160] (imputed)	N
765	chr8	23719570	23719571	rs7007761	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	8p21.2	STC1	rs7007761-T	0.299	3E-23		0.484	[0.29-0.67] ml/min/1.73m2 decrease	Affymetrix, Illumina [at least 5248638] (imputed)	N
765	chr8	23723632	23723633	rs117050169	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	8p21.2	NR	rs117050169-G	NR	2E-9		0.0404	[0.027-0.054] unit increase	Affymetrix [9000000] (imputed)	N
766	chr8	23734265	23734266	rs17785813	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	8p21.2	NR	rs17785813-G	NR	6E-32		0.0519	[0.043-0.061] unit increase	Affymetrix [9000000] (imputed)	N
766	chr8	23735046	23735047	rs4871905	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in non-diabetics	152,624 European ancestry individuals, 36,369 African American individuals	NA	8p21.2	STC1	rs4871905-C	0.404	5E-23		0.519	[0.42-0.62] unit decrease	Affymetrix [NR] (imputed)	N
766	chr8	23735046	23735047	rs4871905	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	8p21.2	STC1	rs4871905-C	0.4199	4E-53		0.0043	[0.0037-0.0049] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
766	chr8	23737079	23737080	rs7812843	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals	NA	8p21.2	STC1	rs7812843-A	0.501	4E-9		0.0116995	[0.0078-0.0156] unit decrease	Affymetrix, Illumina [8603712] (imputed)	N
766	chr8	23739374	23739375	rs10110261	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals, 6,795 African American individuals, 6,324 East Asian ancestry individuals, 2,335 South Asian ancestry individuals, 1,442 Hispanic individuals	NA	8p21.2	STC1	rs10110261-A	NR	3E-9		0.0116	[0.0077-0.0155] unit decrease	Affymetrix, Illumina [8034757] (imputed)	N
766	chr8	23742536	23742537	rs819195	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Blood urea nitrogen levels	139,818 Japanese ancestry individuals	NA	8p21.2	STC1, ADAM28	rs819195-?	NR	4E-9		0.0261	[0.017-0.035] unit decrease novel	Illumina [6108953] (imputed)	N
766	chr8	23742720	23742721	rs819196	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Creatinine levels	69,591 European ancestry individuals	NA	8p21.2	STC1, RNU1-148P	rs819196-A	0.527767	4E-11		0.04046	[0.03-0.051] unit decrease	Illumina [24961484] (imputed)	N
766	chr8	23748419	23748420	rs34861762	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	8p21.2		rs34861762-T	NR	2E-68		0.0304	[0.027-0.034] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
766	chr8	23748419	23748420	rs34861762	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	8p21.2	STC1	rs34861762-T	0.3658	2E-25		0.0343	[0.028-0.041] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
766	chr8	23748419	23748420	rs34861762	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	8p21.2	STC1	rs34861762-T	0.3328	2E-6	(AA)	0.0644	[0.038-0.091] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
766	chr8	23748419	23748420	rs34861762	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	8p21.2	STC1	rs34861762-T	0.4194	4E-19		0.034282	[0.027-0.042] mg/dL increase	Affymetrix, Illumina [8217339] (imputed)	N
766	chr8	23748419	23748420	rs34861762	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	8p21.2	NR	rs34861762-T	0.3661	8E-13	(women)	0.0341	[0.025-0.044] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
766	chr8	23748419	23748420	rs34861762	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	8p21.2	NR	rs34861762-T	0.3413	1E-8	(men)	0.0308	[0.02-0.041] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
766	chr8	23748419	23748420	rs34861762	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	8p21.2	STC1	rs34861762-T	0.3863	2E-62		0.0043	[0.0037-0.0049] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
766	chr8	23748419	23748420	rs34861762	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	165,726 East Asian ancestry individuals	NA	8p21.2	STC1	rs34861762-T	0.201	3E-7		0.0043	[0.0027-0.0059] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
766	chr8	23748419	23748420	rs34861762	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Chronic kidney disease	64,164 European and unknown ancestry cases, 561,055 European and unknown ancestry controls	NA	8p21.2	STC1	rs34861762-T	0.39	1E-7		1.0443	[1.0277-1.0612]	Affymetrix, Illumina [9585923] (imputed)	N
766	chr8	23751150	23751151	rs10109414	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals, at least 88,461 European ancestry individuals	NA	8p21.2	STC1, ADAM28	rs10109414-T	0.458	3E-8	(EA)	0.022142857	[0.014-0.03] unit increase	Illumina [1986983] (imputed)	N
766	chr8	23751150	23751151	rs10109414	27588450	Mahajan A	2016-09-01	Am J Hum Genet	Trans-ethnic Fine Mapping Highlights Kidney-Function Genes Linked to Salt Sensitivity.	Glomerular filtration rate	23,553 European ancestry individuals, 23,536 Japanese individuals, 16,325 Hispanic individuals, 8,224 African American individuals	NA	8p21.2	STC1	rs10109414-T	NR	3E-7		0.605	[0.38-0.83] unit decrease	Affymetrix, Illumina [at least 6581000] (imputed)	N
766	chr8	23751150	23751151	rs10109414	26831199	Pattaro C	2016-01-21	Nat Commun	Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function.	Glomerular filtration rate in non diabetics (creatinine)	118,448 European ancestry individuals	36,433 European ancestry individuals	8p21.2	STC1	rs10109414-T	NR	4E-16		0.0075	[0.0057-0.0093] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
766	chr8	23751150	23751151	rs10109414	20383146	Kottgen A	2010-04-11	Nat Genet	New loci associated with kidney function and chronic kidney disease.	Chronic kidney disease	Up to 67,093 European ancestry individuals	Up to 22,982 European ancestry individuals	8p21.2	STC1	rs10109414-T	0.42	1E-8	(eGFRcrea)			Affymetrix, Illumina [~ 2500000] (imputed)	N
766	chr8	23759534	23759535	rs7834797	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	8p21.2		rs7834797-A	NR	1E-40		0.0272	[0.023-0.031] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
766	chr8	23759534	23759535	rs7834797	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	8p21.2	STC1	rs7834797-A	0.4854	3E-19		0.0065	[0.0051-0.0079] unit increase	Affymetrix, Illumina [8176554] (imputed)	N
766	chr8	23760909	23760910	rs17089719	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	148,767 East Asian ancestry individuals	NA	8p21.2		rs17089719-G	0.205664	4E-9		0.0245964	[0.016-0.033] unit increase	Illumina [13478792] (imputed)	N
766	chr8	23768484	23768484	rs35420568	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	150,266 East Asian ancestry individuals	NA	8p21.2		rs35420568-CT	0.836454	1E-10		0.0248652	[0.017-0.032] unit decrease	Illumina [13478778] (imputed)	N
766	chr8	23769617	23769618	rs1705694	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Glomerular filtration rate	143,658 Japanese ancestry individuals	NA	8p21.2	STC1, ADAM28	rs1705694-?	NR	1E-12		0.03613	[0.026-0.046] unit increase novel	Illumina [6108953] (imputed)	N
766	chr8	23769617	23769618	rs1705694	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Creatinine levels	142,097 Japanese ancestry individuals	NA	8p21.2	STC1, ADAM28	rs1705694-?	NR	9E-12		0.03389	[0.024-0.044] unit decrease novel	Illumina [6108953] (imputed)	N
766	chr8	23777005	23777006	rs17786744	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Creatinine levels	110,051 European ancestry individuals	NA	8p21.2		rs17786744-A	0.589349	9E-13		0.0257799	[0.019-0.033] unit decrease	NR [11722792] (imputed)	N
766	chr8	23777005	23777006	rs17786744	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	8p21.2		rs17786744-G	NR	1E-33		0.0223	[0.019-0.026] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
766	chr8	23777005	23777006	rs17786744	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	8p21.2	NR	rs17786744-A	0.59	8E-37		0.0234	[0.02-0.027] unit decrease	NR [NR]	N
766	chr8	23777005	23777006	rs17786744	31985003	Boocock J	2020-01-27	Hum Mol Genet	Genomic dissection of 43 serum urate-associated loci provides multiple insights into molecular mechanisms of urate control.	Urate levels	110,238 European ancestry individuals, 21,471 East Asian individuals	NA	8p21.2	STC1	rs17786744-A		3E-8		0.029	[0.019-0.039] mg/dl decrease	NR [NR] (imputed)	N
766	chr8	23777005	23777006	rs17786744	23263486	Kottgen A	2012-12-23	Nat Genet	Genome-wide association analyses identify 18 new loci associated with serum urate concentrations.	Urate levels	49,825 European ancestry males, 60,522 European ancestry females	Up to 32,813 European ancestry individuals	8p21.2	STC1	rs17786744-A	0.58	1E-8		0.029	[0.019-0.039] mg/dl decrease	Affymetrix, Illumina, Perlegen [2450547] (imputed)	N
766	chr8	23784586	23784587	rs13267474	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Kidney volume	32,860 European ancestry individuals	NA	8p21.2	STC1	rs13267474-?	NR	1E-12		0.0462	NR L decrease	Affymetrix [9390170] (imputed)	N
766	chr8	23796860	23796861	rs77048708	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	8p21.2	NR	rs77048708-G	NR	6E-6	(GEE model)	0.67354	[0.38-0.97] unit decrease	NR [NR] (imputed)	N
766	chr8	23798270	23798271	rs10093216	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8p21.2	STC1	rs10093216-G	NR	4E-9		0.0235455	[0.016-0.031] unit increase	Affymetrix [321114] (imputed)	N
766	chr8	23809681	23809682	rs28501371	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	8p21.2	NR	rs28501371-?	NR	5E-9				Affymetrix [~ 8270000] (imputed)	N
766	chr8	23818686	23818687	rs7833268	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Subcutaneous adipose tissue	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA		STC1	rs7833268-C	0.13	6E-7	(women)			Affymetrix, Illumina [2500000] (imputed)	N
766	chr8	23830527	23830528	rs76189405	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8p21.2	NR	rs76189405-A	0.01045	2E-10	(FN3K)	0.02345	NR unit increase	Illumina [1671387] (imputed)	N
766	chr8	23853906	23853907	rs78336933	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8p21.2	RNU1-148P	rs78336933-T	NR	1E-8		0.0277181	[0.018-0.037] unit increase	Affymetrix [321114] (imputed)	N
767	chr8	23879935	23879936	rs4872210	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	8p21.2		rs4872210-?	NR	6E-9				NR [~ 8900000] (imputed)	N
767	chr8	23887222	23887223	rs76470312	34404834	Sin S	2021-08-17	Sci Rep	A genome-wide association study of quantitative computed tomographic emphysema in Korean populations.	Emphysema	514 Korean ancestry COPD individuals, 34 Korean ancestry non COPD individuals	NA	8p21.2		rs76470312-?	NR	9E-7		1.2	[0.73-1.67] unit decrease	NR [599248] (imputed)	N
768	chr8	24041987	24041988	rs62501195	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8p21.2	RP11-203E8.1	rs62501195-C	NR	8E-12		0.0261994	[0.019-0.034] unit decrease	Affymetrix [321114] (imputed)	N
768	chr8	24041987	24041988	rs62501195	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p21.2	RP11-203E8.1	rs62501195-C	NR	2E-15		0.0329386	[0.025-0.041] unit decrease	Affymetrix [321114] (imputed)	N
768	chr8	24041987	24041988	rs62501195	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	8p21.2	RP11-203E8.1	rs62501195-C	NR	6E-9		0.024076	[0.016-0.032] unit decrease	Affymetrix [323123] (imputed)	N
768	chr8	24041987	24041988	rs62501195	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	8p21.2	intergenic	rs62501195-A	0.8288	8E-15		0.0198	[0.015-0.025] unit increase	Affymetrix [18391927] (imputed)	N
768	chr8	24041987	24041988	rs62501195	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	8p21.2	NR	rs62501195-?	NR	2E-26				Affymetrix [~ 8270000] (imputed)	N
768	chr8	24041987	24041988	rs62501195	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	8p21.2		rs62501195-?	NR	6E-84				NR [~ 8900000] (imputed)	N
768	chr8	24044300	24044301	rs11777116	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine - clinic-based	5,175 European ancestry clinic-based cases, 13,972 European ancestry clinic-based controls	NA	8p21.2	intergenic	rs11777116-T	0.08	6E-8		1.27	[1.17-1.39]	Affymetrix, Illumina [~ 2300000] (imputed)	N
768	chr8	24094837	24094838	rs540309444	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p21.2	ADAM28	rs540309444-G	NR	6E-13		0.0259079	[0.019-0.033] unit decrease	Affymetrix [321114] (imputed)	N
768	chr8	24100903	24100904	rs80149968	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8p21.2	ADAM28	rs80149968-T	NR	3E-12		0.0290341	[0.021-0.037] unit decrease	Affymetrix [321114] (imputed)	N
768	chr8	24116303	24116304	rs1013209	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	8p21.2	ADAM28	rs1013209-T	0.25	2E-9		0.025	[NR] unit decrease	Affymetrix, Illumina [2834208] (imputed)	N
768	chr8	24116721	24116722	rs1013210	30946743	Li Z	2019-04-04	PLoS Genet	Genome-wide association study in Turkish and Iranian populations identify rare familial Mediterranean fever gene (MEFV) polymorphisms associated with ankylosing spondylitis.	Ankylosing spondylitis	921 Turkish ancestry cases, 907 Turkish ancestry controls, 422 Iranian ancestry cases, 754 Iranian ancestry controls	NA	8p21.2	ADAM28	rs1013210-G	NR	8E-8		1.5384616	[1.54-1.54]	Illumina [up to 294091]	N
769	chr8	24154653	24154654	rs11992342	27018472	Leslie EJ	2016-04-07	Am J Hum Genet	A Genome-wide Association Study of Nonsyndromic Cleft Palate Identifies an Etiologic Missense Variant in GRHL3.	Cleft palate	38 European ancestry cases, 835 European ancestry controls, 21 Hispanic cases, 626 Hispanic controls, 2 Asian ancestry cases, 161 Asian ancestry controls, 38 Indian ancestry controls, 15 Sub-Saharan African ancestry cases, 2 African American cases, 68 Sub-Saharan African ancestry controls, 5 African American controls, 1 African control, 4 controls	246 European ancestry cases, 1,685 European ancestry controls	8p21.2	NR	rs11992342-T	NR	4E-6	(EA)	3.767	[2.144-6.62]	Illumina [34985077] (imputed)	N
769	chr8	24154653	24154654	rs11992342	27018472	Leslie EJ	2016-04-07	Am J Hum Genet	A Genome-wide Association Study of Nonsyndromic Cleft Palate Identifies an Etiologic Missense Variant in GRHL3.	Cleft palate	38 European ancestry cases, 835 European ancestry controls, 21 Hispanic cases, 626 Hispanic controls, 2 Asian ancestry cases, 161 Asian ancestry controls, 38 Indian ancestry controls, 15 Sub-Saharan African ancestry cases, 2 African American cases, 68 Sub-Saharan African ancestry controls, 5 African American controls, 1 African control, 4 controls	246 European ancestry cases, 1,685 European ancestry controls	8p21.2	NR	rs11992342-T	NR	4E-6		3.77	[2.14-6.62]	Illumina [34985077] (imputed)	N
769	chr8	24180927	24180928	rs58578562	29538362	Jilling T	2018-03-14	Pediatr Res	Surgical necrotizing enterocolitis in extremely premature neonates is associated with genetic variations in an intergenic region of chromosome eight.	Surgical necrotising enterocolitis in extremely premature birth	20 African American cases, 6 Hispanic Caucasian cases, 4 European ancestry cases,  283 African American controls, 130 Hispanic Caucasian controls, 133 European ancestry controls,	NA	8p21.2	NR	rs58578562-?	NR	4E-6				Illumina [8270200] (imputed)	N
769	chr8	24208846	24208847	rs7009516	26926045	Adhikari K	2016-03-01	Nat Commun	A genome-wide association scan in admixed Latin Americans identifies loci influencing facial and scalp hair features.	Hair greying	6,357 Latin American individuals	NA	8p21.2	ADAM7, ADAM28, ADAMDEC1	rs7009516-?	NR	4E-6				Illumina [9143600] (imputed)	N
769	chr8	24234354	24234355	rs147851892	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	8p21.2	Intergenic	rs147851892-G	0.998	2E-7	(AA)	0.236	unit increase	Illumina [NR] (imputed)	N
769	chr8	24234354	24234355	rs147851892	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	8p21.2	Intergenic	rs147851892-G	0.998	9E-7	(AA)	1.122	NR unit increase	Illumina [NR] (imputed)	N
770	chr8	24252646	24252647	rs76130798	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	8p21.2		rs76130798-?	NR	2E-8				NR [~ 8900000] (imputed)	N
770	chr8	24275514	24275515	rs12546673	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Scarlet fever	6,812 European ancestry cases, 113,837 European ancestry controls	NA	8p21.2	NR	rs12546673-?	NR	5E-6		0.1025	[0.059-0.146] unit decrease	Illumina [at least 560000] (imputed)	N
770	chr8	24378740	24378741	rs11781622	23218918	Sprooten E	2012-12-04	Psychiatry Res	White matter integrity as an intermediate phenotype: exploratory genome-wide association analysis in individuals at high risk of bipolar disorder.	White matter integrity	70 unaffected relatives of cases with bipolar disorder, 80 controls	NA	8p21.2	ADAM7	rs11781622-?	0.14	3E-6				Illumina [565404]	N
771	chr8	24395262	24395263	rs113414285	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	8p21.2	Intergenic	rs113414285-C	0.998	6E-7	(AA)	0.217	unit increase	Illumina [NR] (imputed)	N
771	chr8	24400647	24400648	rs111754512	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	8p21.2	Intergenic	rs111754512-T	0.999	6E-7	(AA)	0.217	unit increase	Illumina [NR] (imputed)	N
771	chr8	24401397	24401398	rs117188076	32066683	Lacaze P	2020-01-27	Transl Psychiatry	Genetic associations with clozapine-induced myocarditis in patients with schizophrenia.	Clozapine-induced myocarditis in schizophrenia	33 cases, 62 controls	NA	8p21.2	ADAM7	rs117188076-T	0.03	3E-7		13.74	[3.68-51.22]	Illumina [6822414] (imputed)	N
771	chr8	24479694	24479695	rs188460439	30894546	Ivarsdottir EV	2019-03-20	Nat Commun	Sequence variation at ANAPC1 accounts for 24% of the variability in corneal endothelial cell density.	Corneal endothelial cell density	6,125 Icelandic ancestry individuals	NA	8p21.2	NR	rs188460439-A	NR	6E-8		0.56	unit increase	Illumina [NR]	N
772	chr8	24517223	24517224	rs17052317	29495422	Xu H	2018-02-26	J Pers Med	A Genome-Wide Association Study of Idiopathic Dilated Cardiomyopathy in African Americans.	Idiopathic dilated cardiomyopathy	662 African American cases, 1,138 African American controls	NA	8p21.2	LOC101929294, NEFM	rs17052317-G	0.038	5E-6		1.94	[1.44-2.62]	Affymetrix [up to 27494467] (imputed)	N
772	chr8	24533192	24533193	rs4625043	26421299	Li J	2015-09-03	Biomed Res Int	Genetic Interactions Explain Variance in Cingulate Amyloid Burden: An AV-45 PET Genome-Wide Association and Interaction Study in the ADNI Cohort.	Cingulate cortical amyloid beta load	215 European ancestry early mild cognitive impairment cases, 152 European ancestry late mild cognitive impairment cases, 45 European ancestry Alzheimer disease cases, 190  European ancestry controls	NA	8p21.2	ADAM7	rs4625043-?	NR	2E-7				Illumina [582718]	N
772	chr8	24559721	24559722	rs13274806	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	8p21.2	Intergenic	rs13274806-T	0.649	2E-8	(MTAG)	0.0097	[0.0064-0.013] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
772	chr8	24597870	24597871	rs5017326	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	8p21.2	Intergenic	rs5017326-T	0.649	4E-10	(MTAG)	0.0117	[0.008-0.0154] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
772	chr8	24597870	24597871	rs5017326	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	8p21.2	Intergenic	rs5017326-C	0.351	4E-10		0.0128	[0.0089-0.0167] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
772	chr8	24598319	24598320	rs148693048	34450027	Boer CG	2021-08-24	Cell	Deciphering osteoarthritis genetics across 826,690 individuals from 9 populations.	Early-onset osteoarthritis	6,838 European ancestry cases, 41,449 European ancestry controls	NA	8p21.2		rs148693048-T	0.0012	3E-8		6.259498	[3.264151852-12.00352121]	Affymetrix, Illumina [NR] (imputed)	N
773	chr8	24648405	24648406	rs10102859	29532581	Hallfors J	2018-03-13	Addict Biol	Genome-wide association study in Finnish twins highlights the connection between nicotine addiction and neurotrophin signaling pathway.	Nicotine withdrawal symptom count	1,703 Finnish ancestry ever smoker individuals from up to 739 families	NA	8p21.2	NR	rs10102859-G	0.346	3E-6		0.35	[0.21-0.49] unit increase	Illumina [9469131] (imputed)	N
773	chr8	24671037	24671038	rs191831091	30894546	Ivarsdottir EV	2019-03-20	Nat Commun	Sequence variation at ANAPC1 accounts for 24% of the variability in corneal endothelial cell density.	Corneal endothelial cell density	6,125 Icelandic ancestry individuals	NA	8p21.2	NR	rs191831091-T	NR	2E-7		0.512	unit increase	Illumina [NR]	N
773	chr8	24682648	24682649	rs196807	31636452	Satizabal CL	2019-10-21	Nat Genet	Genetic architecture of subcortical brain structures in 38,851 individuals.	Pallidum volume	34,413 European ancestry individuals	341 South East and East Asian ancestry individuals, 769 African American individuals	8p21.2	NR	rs196807-A	0.1785	3E-11		6.652	NR z score increase	Affymetrix, Illumina [NR] (imputed)	N
773	chr8	24698393	24698394	rs10780138	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	8p21.2	MITF	rs10780138-?		5E-8				NR [7428630] (imputed)	N
773	chr8	24705495	24705496	rs191167798	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	8p21.2	NR	rs191167798-?	NR	4E-7		1.39682	[0.86-1.93] unit increase	NR [13958389] (imputed)	N
773	chr8	24716593	24716594	rs196814	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	8p21.2	NR	rs196814-?	NR	5E-12	(left pallidum)			NR [9227495] (imputed)	N
773	chr8	24716593	24716594	rs196814	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	8p21.2	NR	rs196814-?	NR	2E-9	(right pallidum)			NR [9227495] (imputed)	N
773	chr8	24720501	24720502	rs926105	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	8p21.2	NR	rs926105-?	NR	2E-10	(left pallidum)			NR [9227495] (imputed)	N
773	chr8	24734676	24734677	rs196889	25562672	Byrne EM	2014-12-09	J Clin Psychiatry	Seasonality shows evidence for polygenic architecture and genetic correlation with schizophrenia and bipolar disorder.	Seasonality	3,269 European ancestry individuals	887 Old order Amish individuals	8p21.2	OTTHUMG00000163790	rs196889-T	NR	6E-6		0.68	[0.39-0.97] unit increase	Affymetrix, Illumina [2354422] (imputed)	N
773	chr8	24739718	24739719	rs2975187	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	8p21.2	NR	rs2975187-?	NR	7E-9	(right pallidum)			NR [9227495] (imputed)	N
773	chr8	24739718	24739719	rs2975187	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	8p21.2	NR	rs2975187-?	NR	1E-9	(left cerebellum white matter)			NR [9227495] (imputed)	N
774	chr8	24783979	24783980	rs196854	22205395	Tekola Ayele F	2011-12-29	Immunogenetics	Genome-wide associated loci influencing interleukin (IL)-10, IL-1Ra, and IL-6 levels in African Americans.	Interleukin-6 levels	697 African American individuals	NA	8p21.2	NEFM	rs196854-G	0.07	2E-7		0.17	unit decrease	Affymetrix [5396780] (imputed)	N
774	chr8	24799741	24799742	rs6557786	24554482	Leger PD	2014-02-20	J Neurovirol	Genome-wide association study of peripheral neuropathy with D-drug-containing regimens in AIDS Clinical Trials Group protocol 384.	Response to anti-retroviral therapy (ddI/d4T) in HIV-1 infection (Grade 2 peripheral neuropathy)	19 European ancestry cases, 30 African American cases, 9 Hispanic cases, 85 European ancestry controls, 49 African American controls, 30 Hispanic controls	NA	8p21.2	NEFL	rs6557786-?	NR	5E-6	(Hispanic)	23.2	[NR]	Illumina [936149]	N
774	chr8	24806971	24806972	rs2976442	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	8p21.2	NEFM	rs2976442-?		2E-8				NR [7428630] (imputed)	N
774	chr8	24823886	24823887	rs2979689	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Number of common colds	43,826 European ancestry cases, 15,720 European ancestry controls	NA	8p21.2	NR	rs2979689-?	NR	3E-6		0.1014	[0.059-0.144] unit decrease	Illumina [at least 560000] (imputed)	N
774	chr8	24823886	24823887	rs2979689	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8p21.2	NEFM	rs2979689-?	NR	2E-6	(taurocholate)	1.7412151	[1.03-2.45] unit decrease	Affymetrix [at least 2500000] (imputed)	N
774	chr8	24862629	24862630	rs73547001	28701861	Randall CL	2017-06-15	Pain Res Manag	A Preliminary Genome-Wide Association Study of Pain-Related Fear: Implications for Orofacial Pain.	Fear of minor pain	Up to 1,367 European ancestry individuals, up to 159 African American individuals, up to 13 Hispanic individuals, up to 23 Asian, Native American and other ancestry individuals, up to 21 individuals	NA	8p21.2	LOC105379330, NEFM, NEFL	rs73547001-G	0.01	1E-8		3.35	unit decrease	Illumina [8591557] (imputed)	N
775	chr8	24915219	24915220	rs2320782	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,931 Sub-Saharan African ancestry males	NA	8p21.2		rs2320782-T	0.242152	8E-6		0.0140684	[0.0078-0.0203] unit decrease	Illumina [13900000] (imputed)	N
776	chr8	25058490	25058491	rs36069016	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	8p21.2	DOCK5	rs36069016-T	0.728	2E-6		0.035	[0.021-0.049] unit increase	Affymetrix [7947838] (imputed)	N
776	chr8	25064983	25064984	rs9693598	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	8p21.2	DOCK5	rs9693598-?	NR	2E-8		0.044439	[0.029-0.06] unit decrease	Illumina [4804024] (imputed)	N
776	chr8	25108234	25108235	rs6989175	29213071	Mendez-Giraldez R	2017-12-06	Sci Rep	GWAS of the electrocardiographic QT interval in Hispanics/Latinos generalizes previously identified loci and identifies population-specific signals.	QT interval	15,997 Hispanic/Latino individuals	NA	8p21.2	DOCK5	rs6989175-A	0.3	3E-7		1.25	[0.78-1.72] ms increase	Affymetrix, Illumina [up to 17586686] (imputed)	N
776	chr8	25111605	25111606	rs187162159	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	8p21.2	DOCK5	rs187162159-C	0.995	2E-7	(AA)	0.166	unit increase	Illumina [NR] (imputed)	N
776	chr8	25128722	25128723	rs182115318	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	8p21.2	DOCK5	rs182115318-T	0.995	1E-6	(AA)	0.149	unit increase	Illumina [NR] (imputed)	N
776	chr8	25129707	25129708	rs182387400	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	8p21.2	DOCK5	rs182387400-T	0.994	3E-8	(AA)	0.158	unit increase	Illumina [NR] (imputed)	N
776	chr8	25129707	25129708	rs182387400	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	8p21.2	DOCK5	rs182387400-T	0.994	2E-6	(AA)	0.68	NR unit increase	Illumina [NR] (imputed)	N
776	chr8	25130232	25130233	rs147913210	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	8p21.2	DOCK5	rs147913210-G	0.994	3E-8	(AA)	0.158	unit increase	Illumina [NR] (imputed)	N
776	chr8	25130232	25130233	rs147913210	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	8p21.2	DOCK5	rs147913210-G	0.994	3E-6	(AA)	0.679	NR unit increase	Illumina [NR] (imputed)	N
776	chr8	25131458	25131459	rs150281976	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	8p21.2	DOCK5	rs150281976-T	0.995	3E-6	(AA)	0.139	unit increase	Illumina [NR] (imputed)	N
776	chr8	25131522	25131523	rs190951784	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	8p21.2	DOCK5	rs190951784-A	0.995	2E-6	(AA)	0.145	unit increase	Illumina [NR] (imputed)	N
776	chr8	25149218	25149219	rs187637438	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8p21.2	NR	rs187637438-T	0.01394	1E-8	(HIBADH)	0.2983	NR unit increase	Illumina [1671387] (imputed)	N
777	chr8	25180577	25180578	rs145382936	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		DOCK5	rs145382936-?	NR	2E-12	(female)	0.602265	[NR] unit increase	Affymetrix [NR] (imputed)	N
777	chr8	25190751	25190752	rs2468896	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8p21.2	GNRH1	rs2468896-?	NR	7E-6	(TAG 56:5)	0.21596938	[0.12-0.31] unit decrease	Affymetrix [at least 2500000] (imputed)	N
777	chr8	25196709	25196710	rs13267838	25524916	Palmer ND	2014-12-18	Diabetes	Genetic Variants Associated With Quantitative Glucose Homeostasis Traits Translate to Type 2 Diabetes in Mexican Americans: The GUARDIAN (Genetics Underlying Diabetes in Hispanics) Consortium.	Glucose homeostasis traits	up to 4,176 Mexican American individuals	NA	8p21.2	DOCK5	rs13267838-?		4E-6	(M)	54.96	[33.48-76.44] unit increase	Illumina [693128]	N
777	chr8	25202467	25202468	rs139990739	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		DOCK5	rs139990739-?	NR	1E-8		1.16248	[NR] unit decrease	Affymetrix [NR] (imputed)	N
777	chr8	25215102	25215103	rs2321235	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	8p21.2	DOCK5	rs2321235-G	0.41464	2E-11		0.0156667	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
777	chr8	25215103	25215104	rs2321236	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8p21.2	NR	rs2321236-T	0.412297	5E-15				Affymetrix, Illumina [17210439] (imputed)	N
777	chr8	25215103	25215104	rs2321236	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	8p21.2	NR	rs2321236-T	0.414406	2E-16		0.016983	[0.013-0.021] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
777	chr8	25225803	25225804	rs2257081	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	8p21.2	DOCK5	rs2257081-T	0.412004	3E-29		0.025703829	[0.021-0.03] unit increase	Affymetrix [93095623] (imputed)	N
777	chr8	25234388	25234389	rs2659584	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	8p21.2	NR	rs2659584-?	NR	5E-14				Affymetrix [NR]	N
777	chr8	25240487	25240489	rs139252537	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	8p21.2	NR	rs139252537-?		9E-10	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
777	chr8	25240487	25240489	rs139252537	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	8p21.2	NR	rs139252537-?		7E-11	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
777	chr8	25240487	25240489	rs139252537	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	8p21.2	NR	rs139252537-?		5E-8	(Sagittal stratum)			NR [8955960] (imputed)	N
777	chr8	25240487	25240489	rs139252537	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	8p21.2	NR	rs139252537-?		1E-8	(Uncinate fasciculus)			NR [8955960] (imputed)	N
777	chr8	25247180	25247181	rs4872310	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	8p21.2	NR	rs4872310-G	0.752744	4E-12		0.0231059	[0.016-0.03] unit increase	Affymetrix [16577424] (imputed)	N
777	chr8	25248392	25248393	rs6557839	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	8p21.2		rs6557839-?	NR	4E-15				NR [~ 8900000] (imputed)	N
777	chr8	25248614	25248615	rs13261573	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	8p21.2	NR	rs13261573-G	0.751885	2E-12		0.0161763	[0.012-0.021] unit increase	Affymetrix [16583148] (imputed)	N
777	chr8	25248614	25248615	rs13261573	30202859	Laisk T	2018-09-07	Hum Mol Genet	Large scale meta-analysis highlights the hypothalamic-pituitary-gonadal (HPG) axis in the genetic regulation of menstrual cycle length.	Length of menstrual cycle	44,871 European ancestry women	NA	8p21.2	GNRH1, DOCK5	rs13261573-A	0.75	1E-10		0.07	[0.050-0.090] unit decrease UK Biobank	Illumina [9344826] (imputed)	N
777	chr8	25248614	25248615	rs13261573	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	8p21.2		rs13261573-?	NR	1E-15		0.0183915	[0.014-0.023] unit increase	Affymetrix [20259828] (imputed)	N
777	chr8	25251993	25251994	rs2709646	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	8p21.2	DOCK5	rs2709646-G	0.613682	1E-16		0.019325675	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
777	chr8	25265289	25265290	rs77087078	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	8p21.2	DOCK5	rs77087078-A	0.215368	6E-10		0.016795933	[0.011-0.022] unit increase	Affymetrix [93095623] (imputed)	N
777	chr8	25265925	25265926	rs2048080	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	8p21.2	DOCK5	rs2048080-T	0.629503	5E-10		0.014326864	[0.0098-0.0188] unit decrease	Affymetrix [93095623] (imputed)	N
777	chr8	25269101	25269102	rs1506869	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Uterine fibroids	21,024 European ancestry cases, 237,694 European ancestry controls, 14,475 East Asian ancestry cases, 65,733 East Asian ancestry controls	NA	8p21.2		rs1506869-A	NR	1E-8		0.052	[0.034-0.07] unit decrease	Affymetrix, Illumina [25795146] (imputed)	N
777	chr8	25269992	25269993	rs2659582	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	8p21.2	DOCK5	rs2659582-A	0.638076	2E-9		0.014172066	[0.0096-0.0188] unit increase	Affymetrix [93095623] (imputed)	N
777	chr8	25276432	25276433	rs56159016	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	8p21.2	DOCK5, GNRH1	rs56159016-A	0.354975	2E-12		0.016423002	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
777	chr8	25276432	25276433	rs56159016	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	8p21.2	DOCK5, GNRH1	rs56159016-A	0.354983	7E-12		0.016003067	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
777	chr8	25276432	25276433	rs56159016	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	8p21.2	DOCK5, GNRH1	rs56159016-A	0.355043	7E-16		0.018806454	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
777	chr8	25276432	25276433	rs56159016	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	8p21.2	DOCK5, GNRH1	rs56159016-A	0.355056	1E-15		0.018626623	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
777	chr8	25278508	25278509	rs1876281	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	8p21.2	GNRH1	rs1876281-T	0.407106	3E-12		0.0160697	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
777	chr8	25280799	25280800	rs6185	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	8p21.2	GNRH1	rs6185-C	0.74959	2E-15		0.0169969	[0.013-0.021] unit increase	NR [13737936] (imputed)	N
777	chr8	25280799	25280800	rs6185	29773799	Horikoshi M	2018-05-17	Nat Commun	Elucidating the genetic architecture of reproductive ageing in the Japanese population.	Menopause (age at onset)	43,861 Japanese ancestry women	32,545 European ancestry women	8p21.2	GNRH1	rs6185-G	0.51	4E-12				Illumina [at least 532488] (imputed)	N
777	chr8	25280799	25280800	rs6185	29773799	Horikoshi M	2018-05-17	Nat Commun	Elucidating the genetic architecture of reproductive ageing in the Japanese population.	Menopause (age at onset)	43,861 Japanese ancestry women	32,545 European ancestry women	8p21.2	GNRH1	rs6185-G	0.51	3E-13	(japanese)	0.19	[0.13-0.25] year increase	Illumina [at least 532488] (imputed)	N
777	chr8	25283745	25283747	rs201601317	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	8p21.2	NR	rs201601317-?	NR	1E-8	(Brain stem)			NR [9227495] (imputed)	N
777	chr8	25287396	25287397	rs1812594	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	8p21.2		rs1812594-C	NR	4E-11		0.0175	[0.012-0.023] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
777	chr8	25287396	25287397	rs1812594	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	8p21.2	KCTD9	rs1812594-C	0.209991	8E-13		0.01945889	[0.014-0.025] unit increase	Affymetrix [93095623] (imputed)	N
777	chr8	25287396	25287397	rs1812594	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8p21.2	NR	rs1812594-C	0.197288	3E-14				Affymetrix, Illumina [23472807] (imputed)	N
777	chr8	25287396	25287397	rs1812594	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	8p21.2	NR	rs1812594-C	0.209	2E-15		0.018486	[0.014-0.023] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
778	chr8	25311268	25311269	rs17053711	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	8p21.2		rs17053711-?	NR	3E-9				NR [~ 8900000] (imputed)	N
778	chr8	25314391	25314392	rs1506873	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	8p21.2		rs1506873-T	NR	2E-27		0.0146	[0.012-0.017] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
778	chr8	25314570	25314571	rs1506871	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	8p21.2		rs1506871-?	NR	4E-41				NR [~ 8900000] (imputed)	N
778	chr8	25317421	25317422	rs11775241	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	8p21.2		rs11775241-?	NR	1E-7				NR [~ 8900000] (imputed)	N
778	chr8	25321844	25321845	rs35698191	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Endometriosis	4,511 European ancestry cases, 227,260 European ancestry controls, 1,786 East Asian ancestry cases, 80,975 East Asian ancestry controls	NA	8p21.2		rs35698191-A	NR	1E-9		0.1231	[0.084-0.163] unit decrease	Affymetrix, Illumina [25734875] (imputed)	N
778	chr8	25321844	25321845	rs35698191	32121467	Adewuyi EO	2020-02-29	Genes (Basel)	Shared Molecular Genetic Mechanisms Underlie Endometriosis and Migraine Comorbidity.	Endometriosis or migraine	17,054 European and Japanese ancestry endometriosis cases, 29,208 European ancestry migraine cases, 191,858 European and Japanese ancestry controls, 172,931 European ancestry controls	NA	8p21.2	NR	rs35698191-A	NR	6E-6	(random effect)	1.0416667	NR	NR [6904914] (imputed)	N
778	chr8	25324677	25324678	rs11779723	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	8p21.2	NR	rs11779723-C	0.357525	6E-11		0.013304	[0.0093-0.0173] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
778	chr8	25349530	25349531	rs2321250	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	8p21.2	CDCA2	rs2321250-T	0.6429	3E-12		0.0138	[0.0099-0.0177] unit increase	Affymetrix [18391927] (imputed)	N
778	chr8	25374909	25374910	rs2012485	32227373	Osazuwa-Peters OL	2020-03-29	Genet Epidemiol	Identifying blood pressure loci whose effects are modulated by multiple lifestyle exposures.	Systolic blood pressure x quantitative lifestyle risk score interaction (2df test)	6,254 European ancestry individuals	NA	8p21.2	CDCA2	rs2012485-C	0.961	5E-6				NR [2411114] (imputed)	N
778	chr8	25374909	25374910	rs2012485	32227373	Osazuwa-Peters OL	2020-03-29	Genet Epidemiol	Identifying blood pressure loci whose effects are modulated by multiple lifestyle exposures.	Systolic blood pressure x quantitative lifestyle risk score interaction (1df test)	6,254 European ancestry individuals	NA	8p21.2	CDCA2	rs2012485-C	0.961	8E-7		1.8	[1.07-2.53] unit increase	NR [2411114] (imputed)	N
778	chr8	25374909	25374910	rs2012485	27479909	Hyde CL	2016-08-01	Nat Genet	Identification of 15 genetic loci associated with risk of major depression in individuals of European descent.	Major depressive disorder	84,847 European ancestry cases, 241,266 European ancestry controls	45,773 European ancestry cases, 106,354 European ancestry controls	8p21.2	CDCA2, EBF2	rs2012485-T	0.033314	3E-6		0.0769	[0.046-0.108] unit increase	Illumina [1220000] (imputed)	N
778	chr8	25386972	25386973	rs146377178	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	8p21.2	CDCA2	rs146377178-T	NR	5E-8		0.0397391	[0.025-0.054] unit increase	Affymetrix [321788] (imputed)	N
778	chr8	25389630	25389631	rs10098571	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Uterine fibroids	14,475 East Asian ancestry cases, 65,733 East Asian ancestry controls	NA	8p21.2		rs10098571-A	0.500689838	1E-10		0.08960438	[0.062-0.117] unit decrease	Illumina [13401454] (imputed)	N
778	chr8	25417527	25417528	rs17053931	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	8p21.2	NR	rs17053931-A	0.19887999999999995	5E-9		0.02055	[0.014-0.027] unit increase	Affymetrix [16580851] (imputed)	N
778	chr8	25419600	25419601	rs56383105	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	8p21.2	NR	rs56383105-?	NR	8E-10				Affymetrix [~ 8270000] (imputed)	N
779	chr8	25428177	25428178	rs76833264	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	8p21.2	NR	rs76833264-?	NR	3E-10				Affymetrix [~ 8270000] (imputed)	N
779	chr8	25464669	25464670	rs73221948	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	8p21.2		rs73221948-T	NR	2E-11		0.0161	[0.011-0.021] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
779	chr8	25464669	25464670	rs73221948	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Visceral adipose tissue volume	32,860 European ancestry individuals	NA	8p21.2	CDCA2	rs73221948-?	NR	3E-11		0.0502	NR L decrease	Affymetrix [9390170] (imputed)	N
779	chr8	25464669	25464670	rs73221948	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	8p21.2	CDCA2	rs73221948-G	0.709274	6E-14		0.0170503	[0.013-0.022] unit decrease	Affymetrix [NR] (imputed)	N
779	chr8	25464669	25464670	rs73221948	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	8p21.2	CDCA2	rs73221948-G	0.709278	9E-12		0.0148625	[0.011-0.019] unit increase	Affymetrix [NR] (imputed)	N
779	chr8	25464669	25464670	rs73221948	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	8p21.2	NR	rs73221948-?	NR	1E-17				Affymetrix [~ 8270000] (imputed)	N
779	chr8	25464689	25464690	rs11992444	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	8p21.2		rs11992444-T	NR	5E-13		0.0148	[0.011-0.019] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
779	chr8	25464689	25464690	rs11992444	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	8p21.2	RP11-219J21.1	rs11992444-G	NR	3E-14		0.0214572	[0.016-0.027] unit decrease	Affymetrix [319769] (imputed)	N
779	chr8	25464689	25464690	rs11992444	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8p21.2	RP11-219J21.1	rs11992444-G	NR	4E-20		0.0286773	[0.023-0.035] unit decrease	Affymetrix [323858] (imputed)	N
779	chr8	25464689	25464690	rs11992444	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	8p21.2	RP11-219J21.1	rs11992444-G	NR	2E-13		0.0208642	[0.015-0.026] unit decrease	Affymetrix [319769] (imputed)	N
779	chr8	25464689	25464690	rs11992444	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8p21.2	RP11-219J21.1	rs11992444-G	NR	6E-20		0.0285519	[0.022-0.035] unit decrease	Affymetrix [127266] (imputed)	N
779	chr8	25464689	25464690	rs11992444	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8p21.2	RP11-219J21.1	rs11992444-G	NR	1E-10		0.0184063	[0.013-0.024] unit decrease	Affymetrix [321114] (imputed)	N
779	chr8	25464689	25464690	rs11992444	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8p21.2	RP11-219J21.1	rs11992444-G	NR	2E-8		0.0173139	[0.011-0.023] unit decrease	Affymetrix [321114] (imputed)	N
779	chr8	25464689	25464690	rs11992444	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	8p21.2	RP11-219J21.1	rs11992444-G	NR	1E-8		0.0181743	[0.012-0.024] unit increase	Affymetrix [323858] (imputed)	N
779	chr8	25464689	25464690	rs11992444	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	8p21.2	RP11-219J21.1	rs11992444-G	NR	6E-12		0.0196363	[0.014-0.025] unit decrease	Affymetrix [321169] (imputed)	N
779	chr8	25464689	25464690	rs11992444	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	8p21.2	RP11-219J21.1	rs11992444-G	NR	3E-9		0.0183796	[0.012-0.024] unit decrease	Affymetrix [323858] (imputed)	N
779	chr8	25464689	25464690	rs11992444	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	8p21.2	NR	rs11992444-T	NR	5E-10		0.0148	[0.01-0.02] unit decrease	Affymetrix [9000000] (imputed)	N
779	chr8	25464689	25464690	rs11992444	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	8p21.2	intergenic	rs11992444-?	NR	1E-10		0.0167	[0.012-0.021] unit increase	Affymetrix [5701386] (imputed)	N
779	chr8	25464689	25464690	rs11992444	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	8p21.2	NR	rs11992444-?	NR	1E-32				Affymetrix [~ 8270000] (imputed)	N
779	chr8	25464689	25464690	rs11992444	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	8p21.2		rs11992444-?	NR	2E-31				NR [~ 8900000] (imputed)	N
779	chr8	25464689	25464690	rs11992444	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	8p21.2	NR	rs11992444-T	0.5085	6E-32		0.0233	[0.019-0.027] unit increase	NR [~ 27400000] (imputed)	N
779	chr8	25464689	25464690	rs11992444	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	315,284 European ancestry male individuals	NA	8p21.2	NR	rs11992444-T	0.5085	6E-32		0.0233	[0.019-0.027] unit increase	NR [~ 27400000] (imputed)	N
779	chr8	25464689	25464690	rs11992444	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	8p21.2	NA	rs11992444-T	0.5085	5E-21		0.0185	[0.015-0.022] unit increase	NR [~ 27400000] (imputed)	N
779	chr8	25464689	25464690	rs11992444	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	8p21.2	NR	rs11992444-T	0.5085	5E-21		0.0185	[0.015-0.022] unit increase	NR [~ 27400000] (imputed)	N
779	chr8	25464689	25464690	rs11992444	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	316,772 European ancestry male individuals	NA	8p21.2	NR	rs11992444-T	0.5085	5E-21		0.0185	[0.015-0.022] unit increase	NR [~ 27400000] (imputed)	N
779	chr8	25483561	25483562	rs549916972	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference	1,254 whole genome sequenced European ancestry individuals, 3,074 whole genome sequenced individuals, 29,716 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 701 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,050 Mylopotamos (founder/genetic isolate) individuals, 883 Pomak (founder/genetic isolate) individuals	205,909 European ancestry individuals	8p21.2	RP11-219J21.1	rs549916972-A	0.9957	2E-7		0.4985	[0.31-0.68] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
779	chr8	25522133	25522134	rs17801625	31557306	Wang RS	2019-09-26	Clin Pharmacol Ther	Pharmacogenomics and Placebo Response in a Randomized Clinical Trial in Asthma.	Subjective response to placebo treatment in childhood asthma (change in cough/wheeze)	250 European ancestry children	NA	8p21.2	CDCA2	rs17801625-G	0.18	5E-6		1.05	NR unit increase	Illumina [NR] (imputed)	N
779	chr8	25544678	25544679	rs9314308	25461247	Lehmann DS	2015-02-01	Pharmacogenet Genomics	Genome-wide association study of virologic response with efavirenz-containing or abacavir-containing regimens in AIDS clinical trials group protocols.	Response to efavirenz-containing treatment in HIV 1 infection (virologic failure)	Up to 737 European ancestry individuals, Up to 545 Black individuals, Up to 314 Hispanic individuals	NA	8p21.2	NR	rs9314308-C	NR	9E-6	(phenotype 3)	1.55	[NR]	Illumina [> 8000000] (imputed)	N
780	chr8	25568894	25568895	rs2874535	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	8p21.2	RP11-219J21.1	rs2874535-T	NR	2E-10		0.0185131	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
780	chr8	25568894	25568895	rs2874535	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	8p21.2	RP11-219J21.1	rs2874535-T	NR	1E-10		0.0187605	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
780	chr8	25568894	25568895	rs2874535	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	8p21.2	RP11-219J21.1	rs2874535-T	NR	3E-8		0.016347	[0.011-0.022] unit increase	Affymetrix [321169] (imputed)	N
780	chr8	25641572	25641573	rs73675572	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	8p21.2	RP11-219J21.2	rs73675572-A	0.212	5E-6		0.0363	[0.021-0.052] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
780	chr8	25641763	25641764	rs7823561	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	8p21.2	RP11-219J21.2	rs7823561-C	NR	1E-10		0.0194959	[0.014-0.025] unit decrease	Affymetrix [319769] (imputed)	N
780	chr8	25641763	25641764	rs7823561	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	8p21.2	RP11-219J21.2	rs7823561-C	NR	1E-10		0.0194841	[0.014-0.025] unit decrease	Affymetrix [319769] (imputed)	N
780	chr8	25641763	25641764	rs7823561	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	8p21.2	NR	rs7823561-?	NR	3E-13				Affymetrix [~ 8270000] (imputed)	N
780	chr8	25641763	25641764	rs7823561	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	8p21.2	NR	rs7823561-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
780	chr8	25641763	25641764	rs7823561	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	8p21.2		rs7823561-?	NR	6E-14				NR [~ 8900000] (imputed)	N
780	chr8	25641763	25641764	rs7823561	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	8p21.2	NR	rs7823561-A	0.66	2E-13		0.014	[0.01-0.018] unit increase	Affymetrix [2446094] (imputed)	N
780	chr8	25641763	25641764	rs7823561	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	8p21.2	NR	rs7823561-A	0.66	5E-8				Affymetrix [2446094] (imputed)	N
780	chr8	25641763	25641764	rs7823561	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	8p21.2	NA	rs7823561-A	0.6527	3E-17		0.0159	[0.012-0.02] unit increase	NR [~ 27400000] (imputed)	N
780	chr8	25651527	25651528	rs2081493	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	8p21.2	NA	rs2081493-C	0.2997	1E-9		0.0112	[0.0077-0.0147] unit increase	NR [~ 27400000] (imputed)	N
780	chr8	25651536	25651537	rs2081492	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	8p21.2		rs2081492-T	NR	3E-8		0.014	[0.0091-0.0189] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
781	chr8	25706358	25706359	rs4410916	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Inguinal hernia	16,725 European ancestry cases, 428,356 European ancestry controls, 1,664 East Asian ancestry cases, 177,062 East Asian ancestry controls	NA	8p21.2		rs4410916-G	NR	1E-50		0.1737	[0.15-0.2] unit increase	Affymetrix, Illumina [25841416] (imputed)	N
781	chr8	25707411	25707412	rs6991952	26686553	Jorgenson E	2015-12-21	Nat Commun	A genome-wide association study identifies four novel susceptibility loci underlying inguinal hernia.	Inguinal hernia	5,295 European ancestry cases, 67,510 European ancestry controls	9,701 European ancestry cases, 82,743 European ancestry controls	8p21.2	EBF2	rs6991952-G	0.43	7E-15		1.11	[1.08-1.14]	Affymetrix [6161781] (imputed)	N
781	chr8	25735737	25735738	rs10099264	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Inguinal hernia	1,664 East Asian ancestry cases, 177,062 East Asian ancestry controls	NA	8p21.2		rs10099264-A	0.143557148	9E-9		0.29078555	[0.19-0.39] unit increase	Illumina [13429980] (imputed)	N
781	chr8	25741905	25741906	rs11135899	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	8p21.2	EBF2	rs11135899-G	NR	4E-8		0.0156638	[0.01-0.021] unit decrease	Affymetrix [319769] (imputed)	N
781	chr8	25743427	25743428	rs10503779	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	8p21.2	EBF2	rs10503779-G	NR	9E-10		0.0182332	[0.012-0.024] unit decrease	Affymetrix [319769] (imputed)	N
781	chr8	25743427	25743428	rs10503779	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	8p21.2	EBF2	rs10503779-G	NR	2E-9		0.017902	[0.012-0.024] unit decrease	Affymetrix [319769] (imputed)	N
781	chr8	25758071	25758072	rs6557867	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	8p21.2		rs6557867-C	NR	2E-8		0.018	[0.012-0.024] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
781	chr8	25762215	25762216	rs4871958	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	8p21.2	NR	rs4871958-A	0.5073	3E-12		0.012	[0.0087-0.0153] unit increase	NR [~ 27400000] (imputed)	N
781	chr8	25762215	25762216	rs4871958	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	8p21.2	NR	rs4871958-A	0.5072	2E-16		0.0139	[0.011-0.017] unit increase	NR [~ 27400000] (imputed)	N
781	chr8	25767551	25767552	rs17808864	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	8p21.2	EBF2	rs17808864-C	NR	7E-9		0.0163905	[0.011-0.022] unit decrease	Affymetrix [319769] (imputed)	N
781	chr8	25767551	25767552	rs17808864	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	8p21.2	EBF2	rs17808864-C	NR	8E-9		0.0163805	[0.011-0.022] unit decrease	Affymetrix [319769] (imputed)	N
781	chr8	25767980	25767981	rs11783424	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	8p21.2	EBF2	rs11783424-T	NR	3E-8		0.0163196	[0.011-0.022] unit increase	Affymetrix [321788] (imputed)	N
781	chr8	25770556	25770557	rs884152	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	8p21.2	EBF2	rs884152-G	0.355895	6E-9		0.00851231	[0.0056-0.0114] unit decrease	Affymetrix [12370749]	N
781	chr8	25778837	25778838	rs7834102	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	8p21.2	EBF2	rs7834102-T	NR	5E-9		0.0179521	[0.012-0.024] unit increase	Affymetrix [321788] (imputed)	N
781	chr8	25780151	25780152	rs6985478	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	8p21.2	NR	rs6985478-?	NR	6E-10				Affymetrix [~ 8270000] (imputed)	N
781	chr8	25786442	25786443	rs1021230	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 157,769 European ancestry controls	NA	8p21.2	NR	rs1021230-?	NR	7E-7		0.0621	[0.038-0.087] unit decrease	Affymetrix, Illumina [12923718] (imputed)	N
781	chr8	25816375	25816376	rs4872381	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 232)	19,670 European ancestry individuals	NA	8p21.2		rs4872381-?	NR	4E-14				NR [9705931] (imputed)	N
782	chr8	25831777	25831778	rs13256025	32424353	Zhang H	2020-05-18	Nat Genet	Genome-wide association study identifies 32 novel breast cancer susceptibility loci from overall and subtype-specific analyses.	Breast cancer	133,384 European ancestry cases, 113,789 European ancestry controls	NA	8p21.2	NR	rs13256025-T	0.2	1E-8		1.05	[1.03-1.06]	Illumina [~ 10800000] (imputed)	N
782	chr8	25831777	25831778	rs13256025	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	8p21.2	NR	rs13256025-T	0.1999	2E-7	(EA)	0.0428	[0.027-0.059] unit increase	Illumina [~ 11800000] (imputed)	N
782	chr8	25836882	25836883	rs147475322	33539531	Casares-Marfil D	2021-02-04	Clin Infect Dis	A genome-wide association study identifies novel susceptibility loci in chronic Chagas cardiomyopathy.	Trypanosoma cruzi infection	1,019 Colombian ancestry cases, 1,104 Colombian ancestry controls	NA	8p21.2		rs147475322-A	0.03	2E-7		1.2	[0.76-1.9]	Illumina [7846902] (imputed)	N
782	chr8	25845674	25845675	rs10866846	28886342	Ng M	2017-09-07	Am J Hum Genet	A Genome-wide Association Study of Dupuytren Disease Reveals 17 Additional Variants Implicated in Fibrosis.	Dupuytren's disease	3,871 European ancestry cases, 4,686 European ancestry controls	4,041 European and unknown ancestry cases, 8,251 European and unknown ancestry controls	8p21.2	EBF2	rs10866846-A	0.421	2E-15		1.19	[1.14-1.242]	Illumina [238825]	N
782	chr8	25871720	25871721	rs11998023	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	8p21.2	NR	rs11998023-G	0.1765	9E-10		0.0324	[0.022-0.043] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
782	chr8	25872633	25872634	rs17818197	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	8p21.2	NR	rs17818197-G	0.2117	5E-10		0.0346	[0.024-0.046] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
782	chr8	25880399	25880400	rs7008914	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	8p21.2		rs7008914-C	NR	2E-9		0.0328	[0.022-0.043] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
782	chr8	25880399	25880400	rs7008914	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	8p21.2	EBF2	rs7008914-T		5E-8		0.238	unit increase	Affymetrix [at least 2696785] (imputed)	N
782	chr8	25884868	25884869	rs17054776	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	8p21.2		rs17054776-T	NR	2E-9		0.013	[0.0087-0.0173] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
782	chr8	25889605	25889606	rs34726834	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	8p21.2		rs34726834-?	NR	2E-9		0.014013	[0.0094-0.0186] unit increase	NR [6912294] (imputed)	N
782	chr8	25889605	25889606	rs34726834	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	8p21.2	NR	rs34726834-T	0.253615	7E-10		0.013824	[0.0094-0.0182] unit increase	Affymetrix [16668957] (imputed)	N
782	chr8	25891544	25891545	rs1485745	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	8p21.2	NR	rs1485745-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
782	chr8	25892141	25892142	rs11135910	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	8p21.2	NR	rs11135910-T	0.15	9E-13		1.08	[1.06-1.10]	Illumina [20370935] (imputed)	N
782	chr8	25892141	25892142	rs11135910	23535732	Eeles RA	2013-04-01	Nat Genet	Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array.	Prostate cancer	11,085 European ancestry cases, 11,463 European ancestry controls	19,662 European ancestry cases, 19,715 European ancestry controls	8p21.2	EBF2	rs11135910-A	0.16	8E-11		1.11	[1.07-1.16]	Illumina [~ 2600000] (imputed)	N
782	chr8	25892918	25892919	rs28692966	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	417,580 European ancestry individuals	NA	8p21.2		rs28692966-G	0.747064	9E-11		0.015	[0.011-0.019] unit increase	NR [7250403] (imputed)	N
782	chr8	25894201	25894205	rs141811748	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 91,972 European ancestry controls	6,852 European ancestry cases, 193,117 European ancestry controls	8p21.2	NR	rs141811748-C	0.153699978	7E-6		1.1080471	[1.06-1.16]	Affymetrix, Illumina [20400945] (imputed)	N
782	chr8	25894201	25894205	rs141811748	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	8p21.2	NR	rs141811748-C	NR	6E-14		1.078	[1.06-1.10]	Affymetrix, Illumina [29235255] (imputed)	N
782	chr8	25898564	25898565	rs1982768	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Prostate cancer	10,792 European ancestry cases, 410,350 European ancestry controls	NA	8p21.2		rs1982768-C	NR	1E-7		1.1079105	NR	Affymetrix [7846216] (imputed)	N
782	chr8	25900404	25900405	rs73563812	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	8p21.2		rs73563812-T	NR	8E-16		0.0169	[0.013-0.021] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
782	chr8	25900404	25900405	rs73563812	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	8p21.2		rs73563812-T	NR	5E-13		0.0147	[0.011-0.019] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
782	chr8	25900404	25900405	rs73563812	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	8p21.2		rs73563812-T	NR	3E-11		0.0142	[0.01-0.018] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
782	chr8	25900404	25900405	rs73563812	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	8p21.2	EBF2	rs73563812-T	0.23594	7E-10		0.043877434	[0.03-0.058] unit decrease	Affymetrix [7288503] (imputed)	N
782	chr8	25900404	25900405	rs73563812	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	8p21.2		rs73563812-?	NR	2E-31				NR [~ 8900000] (imputed)	N
782	chr8	25900404	25900405	rs73563812	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	8p21.2		rs73563812-?	NR	8E-17				NR [~ 8900000] (imputed)	N
782	chr8	25900674	25900675	rs6557876	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Systolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	8p21.2	EBF2	rs6557876-T	0.252	9E-7	(EA, initial)	0.411	[0.25-0.58] unit decrease	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
782	chr8	25900674	25900675	rs6557876	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Systolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	8p21.2	EBF2	rs6557876-T	0.252	3E-14		0.371	[0.27-0.47] unit decrease	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
782	chr8	25903878	25903879	rs55980452	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Time-dependent creatinine clearance change response to tenofovir treatment in HIV infection (time and treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	8p21.2	NR	rs55980452-?		1E-6	(Hispanic)			Illumina [~ 5140000] (imputed)	N
782	chr8	25905578	25905579	rs57580384	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Time-dependent creatinine clearance change response to tenofovir treatment in HIV infection (time and treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	8p21.2	NR	rs57580384-?		5E-7	(Hispanic)			Illumina [~ 5140000] (imputed)	N
782	chr8	25906296	25906297	rs72609945	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Time-dependent creatinine clearance change response to tenofovir treatment in HIV infection (time and treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	8p21.2	NR	rs72609945-?		1E-6	(Hispanic)			Illumina [~ 5140000] (imputed)	N
782	chr8	25908219	25908220	rs59926619	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Time-dependent creatinine clearance change response to tenofovir treatment in HIV infection (time and treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	8p21.2	NR	rs59926619-?		1E-6	(Hispanic)			Illumina [~ 5140000] (imputed)	N
782	chr8	25910245	25910246	rs35297414	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	8p21.2	NR	rs35297414-G	0.459	1E-7		0.00568752	[0.0036-0.0078] unit increase	NR [9732723] (imputed)	N
782	chr8	25917710	25917711	rs4872393	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	8p21.2		rs4872393-?	NR	2E-9				NR [~ 8900000] (imputed)	N
782	chr8	25919019	25919020	rs1485741	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	8p21.2	NR	rs1485741-?	NR	3E-11				Affymetrix [~ 8270000] (imputed)	N
782	chr8	25924028	25924029	rs6993325	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	8p21.2	NR	rs6993325-T	0.4418	1E-8	(East Asian)	0.2522	[0.17-0.34] unit increase	Illumina [6200000] (imputed)	N
782	chr8	25932776	25932777	rs62501779	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	8p21.2	NR	rs62501779-A	0.5589	2E-8	(East Asian)	0.227	[0.15-0.31] unit decrease	Illumina [6200000] (imputed)	N
782	chr8	25935635	25935636	rs11135916	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	8p21.2	NR	rs11135916-A	NR	1E-10		0.0165	[0.011-0.022] unit increase	Affymetrix [9000000] (imputed)	N
782	chr8	25949349	25949350	rs4872401	27629089	Sailer A	2016-09-14	Neurology	A genome-wide association study in multiple system atrophy.	Multiple system atrophy	918 European ancestry cases, 3,864 European ancestry controls	NA	8p21.2	EBF2	rs4872401-A	0.04	5E-6		2.631579		Illumina [4903804] (imputed)	N
783	chr8	26011921	26011922	rs58429174	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls, 49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	8p21.2		rs58429174-T	NR	1E-8		0.0371	[0.024-0.05] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
783	chr8	26011921	26011922	rs58429174	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	8p21.2	EBF2, LOC105379336, PPP2R2A, DPYSL2, ADRA1A	rs58429174-?	NR	4E-6				Affymetrix, Illumina [18800000] (imputed)	N
783	chr8	26011921	26011922	rs58429174	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	8p21.2	EBF2, LOC105379336, PPP2R2A, DPYSL2, ADRA1A	rs58429174-?	NR	2E-7				Affymetrix, Illumina [18800000] (imputed)	N
783	chr8	26011921	26011922	rs58429174	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	8p21.2	EBF2, LOC105379336, PPP2R2A, DPYSL2, ADRA1A	rs58429174-?	NR	3E-9				Affymetrix, Illumina [18800000] (imputed)	N
783	chr8	26011921	26011922	rs58429174	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	8p21.2	EBF2, LOC105379336, PPP2R2A, DPYSL2, ADRA1A	rs58429174-?	NR	2E-6	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
783	chr8	26063164	26063165	rs12677206	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	8p21.2	NR	rs12677206-A	NR	5E-10		1.044	[1.03-1.06]	Affymetrix, Illumina [29235255] (imputed)	N
783	chr8	26063164	26063165	rs12677206	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	8,611 East Asian ancestry cases, 18,809 East Asian ancestry controls	NA	8p21.2	NR	rs12677206-A	0.243	3E-6		1.096	[1.06-1.14]	Affymetrix, Illumina [10186136] (imputed)	N
783	chr8	26063733	26063734	rs34788903	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	8p21.2		rs34788903-?	NR	6E-10				NR [~ 8900000] (imputed)	N
784	chr8	26086912	26086913	rs6557894	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	8p21.2	intergenic	rs6557894-T	0.4648	8E-11		0.0123	[0.0086-0.016] unit decrease	Affymetrix [18391927] (imputed)	N
784	chr8	26098157	26098158	rs12548903	33491795	Timmer T	2021-01-25	Vox Sang	Genetic determinants of ferritin, haemoglobin levels and haemoglobin trajectories: results from Donor InSight.	Declining hemoglobin trajectory in blood donors	1,044 European ancestry cases, 783 European ancestry controls	NA	8p21.2	PPP2R2A	rs12548903-C	0.565	9E-6		0.74	[0.64-0.84]	Affymetrix [7435577] (imputed)	N
784	chr8	26102771	26102772	rs113756303	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	8p21.2	intergenic	rs113756303-T	0.2192	9E-7		0.0398	[0.024-0.056] unit increase	NR [8041861] (imputed)	N
784	chr8	26127883	26127884	rs189583044	34838041	Naderi E	2021-11-27	J Transl Med	A two-stage genome-wide association study of radiation-induced acute toxicity in head and neck cancer.	radiation-induced toxicity (standardized total average toxicity_patient)	881 Dutch ancestry individuals	241 Dutch ancestry individuals	8p21.2		rs189583044-T	NR	7E-7		0.5652751	[0.34-0.79] decrease	Illumina [6334277] (imputed)	N
784	chr8	26143502	26143503	rs111283523	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	8p21.2	NR	rs111283523-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
784	chr8	26170189	26170190	rs190324086	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	8p21.2	NR	rs190324086-?	NR	5E-6		0.0079173	[0.0045-0.0113] unit decrease	Affymetrix [805426] (imputed)	N
784	chr8	26206076	26206077	rs1594829	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	8p21.2	PPP2R2A	rs1594829-C	0.77	4E-8		1.15	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
785	chr8	26226412	26226413	rs191610380	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Aspartate aminotransferase levels in excessive alcohol consumption	951 individuals	NA	8p21.2	NR	rs191610380-?	NR	2E-7		0.0318	[0.02-0.044] unit increase	Illumina [~ 7800000] (imputed)	N
785	chr8	26236977	26236978	rs1064807	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	8p21.2	BC034827	rs1064807-T	NR	9E-20		0.0378075	[0.029-0.046] unit increase	Affymetrix [16832071] (imputed)	N
785	chr8	26240645	26240646	rs1055479	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8p21.2	NR	rs1055479-G	0.693322	2E-12				Affymetrix, Illumina [24246363] (imputed)	N
785	chr8	26240645	26240646	rs1055479	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	8p21.2	NR	rs1055479-G	0.657525	1E-13		0.014286	[0.011-0.018] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
785	chr8	26241009	26241010	rs117982737	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	8p21.2		rs117982737-?	NR	6E-8				NR [~ 8900000] (imputed)	N
785	chr8	26242271	26242272	rs117325001	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	8p21.2	NR	rs117325001-?	NR	2E-13		1.07605	[1.06-1.1]	Affymetrix, Illumina [12447948] (imputed)	N
785	chr8	26242271	26242272	rs117325001	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	8p21.2	BNIP3L	rs117325001-T	NR	7E-6	(East Asian)	1.076	[1.04-1.11]	Illumina [6627481] (imputed)	N
785	chr8	26243135	26243136	rs9314323	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	8p21.2	BNIP3L	rs9314323-G	0.699283	1E-9		0.014761711	[0.01-0.02] unit increase	Affymetrix [93095623] (imputed)	N
785	chr8	26243135	26243136	rs9314323	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	8p21.2		rs9314323-?	NR	2E-17				NR [~ 8900000] (imputed)	N
785	chr8	26243135	26243136	rs9314323	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	8p21.2	BNIP3L	rs9314323-G	0.6976	9E-19		0.03440065	[0.027-0.042] unit increase	Affymetrix [~ 2500000] (imputed)	N
785	chr8	26245657	26245658	rs2874670	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	8p21.2	NR	rs2874670-?	NR	3E-10				Affymetrix [~ 8270000] (imputed)	N
785	chr8	26249017	26249018	rs2304300	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	8p21.2	BNIP3L	rs2304300-A	0.70245	9E-68		0.042307343	[0.038-0.047] unit increase	Affymetrix [93095623] (imputed)	N
785	chr8	26249017	26249018	rs2304300	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	8p21.2	BNIP3L	rs2304300-A	0.702406	4E-15		0.019064967	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
785	chr8	26249017	26249018	rs2304300	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	8p21.2	BNIP3L	rs2304300-A	0.702427	1E-13		0.01819042	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
785	chr8	26249017	26249018	rs2304300	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	8p21.2	BNIP3L	rs2304300-A	0.702412	2E-16		0.020044444	[0.015-0.025] unit increase	Affymetrix [93095623] (imputed)	N
785	chr8	26249017	26249018	rs2304300	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8p21.2	NR	rs2304300-G	0.299831	1E-74				Affymetrix, Illumina [22063850] (imputed)	N
785	chr8	26249017	26249018	rs2304300	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	8p21.2	NR	rs2304300-G	0.300048	9E-78		0.038453	[0.034-0.042] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
785	chr8	26249017	26249018	rs2304300	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8p21.2	NR	rs2304300-A	0.733802	1E-23				Affymetrix, Illumina [20825802] (imputed)	N
785	chr8	26249017	26249018	rs2304300	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	8p21.2	NR	rs2304300-A	0.702254	5E-24		0.021377	[0.017-0.026] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
785	chr8	26250295	26250296	rs3808580	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	8p21.2		rs3808580-C	NR	7E-9		0.0136	[0.0091-0.0181] unit decrease	Affymetrix, Illumina [20536605] (imputed)	N
785	chr8	26250295	26250296	rs3808580	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	8p21.2		rs3808580-?	NR	8E-69				NR [~ 8900000] (imputed)	N
785	chr8	26250681	26250682	rs3808579	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8p21.2	NR	rs3808579-T	0.735225	5E-15				Affymetrix, Illumina [21126107] (imputed)	N
785	chr8	26256287	26256287	rs200565361	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	8p21.2		rs200565361-CAAAAT	NR	6E-10		0.0145	[0.01-0.019] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
785	chr8	26263259	26263260	rs7813520	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	8p21.2	NR	rs7813520-T	0.6957	1E-7		0.01	[0.0063-0.0137] unit increase	NR [~ 27400000] (imputed)	N
785	chr8	26266833	26266834	rs3808576	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	8p21.2	BNIP3L	rs3808576-G	0.701394	2E-13		0.0190061	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
785	chr8	26266833	26266834	rs3808576	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	8p21.2	BNIP3L	rs3808576-A	0.701392	1E-44		0.03455769	[0.03-0.039] unit increase	Affymetrix [93095623] (imputed)	N
785	chr8	26266833	26266834	rs3808576	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	8p21.2	NR	rs3808576-A	0.701101	1E-15		0.017546	[0.013-0.022] SD unit decrease	Affymetrix, Illumina [50282193] (imputed)	N
785	chr8	26266833	26266834	rs3808576	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	8p21.2	BNIP3L	rs3808576-A	0.7007	2E-25		0.04085172	[0.033-0.049] unit increase	Affymetrix [~ 2500000] (imputed)	N
785	chr8	26266833	26266834	rs3808576	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	8p21.2	BNIP3L	rs3808576-A	0.7007	1E-11		0.02675944	[0.019-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
785	chr8	26266833	26266834	rs3808576	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	8p21.2	BNIP3L	rs3808576-A	0.7007	1E-12		0.02822422	[0.02-0.036] unit increase	Affymetrix [~ 2500000] (imputed)	N
785	chr8	26269190	26269191	rs1042992	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	8p21.2	NR	rs1042992-T	NR	2E-7		1.07	[NR]	Illumina [7158791] (imputed)	N
785	chr8	26269411	26269412	rs12165	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	8p21.2		rs12165-T	NR	2E-15		0.0182	[0.014-0.023] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
785	chr8	26269411	26269412	rs12165	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	8p21.2		rs12165-?	NR	4E-24				NR [~ 8900000] (imputed)	N
785	chr8	26271099	26271100	rs6981737	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	8p21.2		rs6981737-?	NR	4E-13				NR [~ 8900000] (imputed)	N
785	chr8	26272767	26272768	rs73219805	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	8p21.2	BNIP3L	rs73219805-A	NR	4E-7	(EA)	1.0772	[1.05-1.11]	Illumina [6627481] (imputed)	N
785	chr8	26272767	26272768	rs73219805	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	8p21.2	BNIP3L	rs73219805-A	NR	2E-12		1.083	[1.06-1.11]	Illumina [6627481] (imputed)	N
785	chr8	26272767	26272768	rs73219805	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	8p21.2	Intergenic	rs73219805-A	0.167	1E-9	(MTAG)	0.0134	[0.0091-0.0177] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
785	chr8	26272767	26272768	rs73219805	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	8p21.2		rs73219805-A	0.1661	3E-8	(conditional-joint)	0.0104	[0.0067-0.0141] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
785	chr8	26272767	26272768	rs73219805	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	8p21.2	BNIP3L, PPP2R2A, SDAD1P1	rs73219805-A	NR	2E-11		1.078	[1.06-1.1]	Affymetrix, Illumina [up to 5107227] (imputed)	N
785	chr8	26279172	26279173	rs73219806	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	8p21.2		rs73219806-A	NR	5E-10		0.0151	[0.01-0.02] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
785	chr8	26279172	26279173	rs73219806	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	8p21.2	BNIP3L	rs73219806-A	0.167456	2E-9		0.0190055	[0.013-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
785	chr8	26279172	26279173	rs73219806	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	8p21.2	BNIP3L	rs73219806-?	NR	7E-9		0.015538963	[0.01-0.021] unit decrease	NR [7306098]	N
785	chr8	26279172	26279173	rs73219806	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	8p21.2		rs73219806-A	0.1683	2E-8		0.0106	[0.0069-0.0143] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
785	chr8	26279172	26279173	rs73219806	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	8p21.2	Intergenic	rs73219806-A	0.1683	4E-9	(MTAG)	0.0104	[0.0069-0.0139] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
785	chr8	26280814	26280815	rs9694042	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	8p21.2		rs9694042-A	NR	2E-8		0.0108	[0.0071-0.0145] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
785	chr8	26280814	26280815	rs9694042	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	8p21.2	BNIP3L, RP11-14I17.2	rs9694042-A	0.620096	3E-10		0.014386354	[0.0099-0.0188] unit increase	Affymetrix [93095623] (imputed)	N
785	chr8	26280814	26280815	rs9694042	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8p21.2	NR	rs9694042-A	0.663637	1E-12				Affymetrix, Illumina [24332387] (imputed)	N
785	chr8	26280814	26280815	rs9694042	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	8p21.2	NR	rs9694042-A	0.617492	3E-13		0.013948	[0.01-0.018] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
785	chr8	26312096	26312097	rs77609452	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	8p21.2	BNIP3L, PNMA2	rs77609452-G	0.01	4E-7		0.3369	[0.21-0.47] unit increase	Illumina [~ 9000000] (imputed)	N
785	chr8	26312096	26312097	rs77609452	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	8p21.2	BNIP3L, PNMA2	rs77609452-G	0.01	3E-7	(EA)	0.3489	[0.22-0.48] unit increase	Illumina [~ 9000000] (imputed)	N
785	chr8	26315913	26315914	rs227982	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 18)	2,187 European ancestry individuals	NA	8p21.2	NR	rs227982-T	0.2036	8E-7		0.185	[0.11-0.26] unit decrease	Illumina [10677593] (imputed)	N
785	chr8	26334102	26334103	rs7008955	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	8p21.2	PNMA2	rs7008955-T	0.472696	3E-8		0.011598	[0.0075-0.0157] unit decrease	NR [16516521] (imputed)	N
786	chr8	26388299	26388300	rs10109417	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	8p21.2		rs10109417-?	NR	3E-13				NR [~ 8900000] (imputed)	N
786	chr8	26397895	26397896	rs11135939	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	8p21.2	BNIP3L, PNMA2, DPYSL2	rs11135939-?		7E-11				NR [7428630] (imputed)	N
786	chr8	26400134	26400135	rs10107066	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	8p21.2		rs10107066-?	NR	4E-8				NR [~ 8900000] (imputed)	N
786	chr8	26419804	26419805	rs36041454	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	8p21.2	FOXP1	rs36041454-?		4E-8				NR [7428630] (imputed)	N
786	chr8	26444876	26444877	rs376954	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	8p21.2		rs376954-G	0.48	1E-19		9.08	z score increase	Affymetrix [9061022] (imputed)	N
786	chr8	26444876	26444877	rs376954	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	8p21.2	NR	rs376954-G	0.4531	1E-17				NR [9056863] (imputed)	N
786	chr8	26445193	26445194	rs17321041	32918910	Dong J	2020-09-09	Gastroenterology	Sex-Specific Genetic Associations for Barrett's Esophagus and Esophageal Adenocarcinoma.	Barrett's esophagus or esophageal adenocarcinoma x sex interaction (2df test)	6,758 European ancestry male cases, 1,670 European ancestry female cases, 7,489 European ancestry male controls, 6,174 European ancestry female controls	NA	8p21.2	DPYSL2	rs17321041-T	NR	3E-7				Illumina [up to 9353006] (imputed)	N
786	chr8	26445193	26445194	rs17321041	32918910	Dong J	2020-09-09	Gastroenterology	Sex-Specific Genetic Associations for Barrett's Esophagus and Esophageal Adenocarcinoma.	Barrett's esophagus or esophageal adenocarcinoma x sex interaction (1df test)	6,758 European ancestry male cases, 1,670 European ancestry female cases, 7,489 European ancestry male controls, 6,174 European ancestry female controls	NA	8p21.2	DPYSL2	rs17321041-T	NR	5E-6		1.52	[1.27-1.82]	Illumina [up to 9353006] (imputed)	N
786	chr8	26445193	26445194	rs17321041	32918910	Dong J	2020-09-09	Gastroenterology	Sex-Specific Genetic Associations for Barrett's Esophagus and Esophageal Adenocarcinoma.	Barrett's esophagus  or Esophageal adenocarcinoma	6,758 European ancestry male cases, 1,670 European ancestry female cases, 7,489 European ancestry male controls, 6,174 European ancestry female controls	NA	8p21.2	DPYSL2	rs17321041-T	NR	5E-8	(female)	1.56	[1.33-1.84]	Illumina [up to 9353006] (imputed)	N
786	chr8	26445193	26445194	rs17321041	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	NA	8p21.2	DPYSL2	rs17321041-C	0.9367	2E-10		0.2313	[0.16-0.3] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
786	chr8	26453104	26453105	rs5029306	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	8p21.2		rs5029306-T	0.37	3E-64		16.93	z score increase	Affymetrix [9061022] (imputed)	N
786	chr8	26453104	26453105	rs5029306	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	8p21.2		rs5029306-T	0.37	6E-22		9.62	z score increase	Affymetrix [9061022] (imputed)	N
786	chr8	26453104	26453105	rs5029306	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	8p21.2	NR	rs5029306-T	0.3542	1E-17				NR [9056863] (imputed)	N
786	chr8	26453104	26453105	rs5029306	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 3)	19,670 European ancestry individuals	NA	8p21.2		rs5029306-?	NR	5E-15				NR [9705931] (imputed)	N
786	chr8	26453104	26453105	rs5029306	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 1)	3,566 European ancestry individuals	4,680 European ancestry individuals	8p21.2		rs5029306-T	0.358665171	5E-10				Illumina [7417619] (imputed)	N
786	chr8	26462014	26462015	rs562044044	29563342	Li XS	2018-03-22	JCI Insight	Untargeted metabolomics identifies trimethyllysine, a TMAO-producing nutrient precursor, as a predictor of incident cardiovascular disease risk.	Plasma trimethyllysine levels	1,297 European ancestry individuals	NA	8p21.2	NR	rs562044044-G	0.01	1E-7		0.301	[0.19-0.41] unit increase	Affymetrix [9012028] (imputed)	N
787	chr8	26518750	26518751	rs7845740	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter alcoholic beverage consumption	336,448 European ancestry individuals	39,924 European ancestry individuals	8p21.2	DPYSL2	rs7845740-T	0.35	5E-6		0.0049	[0.0027-0.0071] unit increase	Affymetrix [~ 7740000] (imputed)	N
787	chr8	26519536	26519537	rs34236168	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	8p21.2		rs34236168-?	NR	6E-8				NR [~ 8900000] (imputed)	N
787	chr8	26587036	26587037	rs28414044	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	8p21.2	NR	rs28414044-?	NR	2E-6		0.022735	[0.013-0.032] unit increase	Affymetrix [805426] (imputed)	N
788	chr8	26628317	26628318	rs13261597	34437536	Akhtari FS	2021-08-26	PLoS Genet	High-throughput screening and genome-wide analyses of 44 anticancer drugs in the 1000 Genomes cell lines reveals an association of the NQO1 gene with the response of multiple anticancer drugs.	Response to hydroxyurea	680 lymphoblastoid cell lines from Han Chinese ancestry, Japanese ancestry, Kenyan ancestry, Mexican ancestry, Tuscan ancestry, Yoruban ancestry, British ancestry, Columbian ancestry individuals	NA	8p21.2		rs13261597-?	NR	1E-6				Illumina [1510701]	N
788	chr8	26681199	26681200	rs73231578	30952644	El Charif O	2019-04-05	Clin Cancer Res	Clinical and Genome-Wide Analysis of Cisplatin-Induced Tinnitus Implicates Novel Ototoxic Mechanisms.	Tinnitus in cisplatin-treated testicular cancer	154 European ancestry cases, 608 European ancestry controls	NA	8p21.2		rs73231578-T	NR	4E-6		2.9383	[2.48-3.4]	Illumina [7225561] (imputed)	N
788	chr8	26714873	26714874	rs13278849	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	8p21.2	ADRA1A	rs13278849-A	0.73	3E-11	(levulinate (4-oxovalerate))	0.013	[0.0091-0.0169] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
788	chr8	26718879	26718880	rs4732957	22952603	Hart AB	2012-08-28	PLoS One	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 10 individuals	NA	8p21.2	ADRA1A	rs4732957-?	NR	7E-6	(SF8)			Affymetrix [5476100] (imputed)	N
788	chr8	26726640	26726641	rs2644627	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (family Peptostreptococcaceae id.2042)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	8p21.2		rs2644627-C	NR	6E-7		4.9807644	z score decrease	Affymetrix, Illumina [NR] (imputed)	N
788	chr8	26730843	26730844	rs145140079	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Periventricular white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	8p21.2	intergenic	rs145140079-T	0.0094	5E-6		0.2187	[0.12-0.31] unit increase	Affymetrix, Illumina [NR] (imputed)	N
789	chr8	26830797	26830798	rs79301185	33501934	Suzuki K	2021-01-27	Inflamm Bowel Dis	Genetic Background of Mesalamine-induced Fever and Diarrhea in Japanese Patients with Inflammatory Bowel Disease.	Fever and diarrhea in mesalamine-treated irritable bowel disease	49 Japanese ancestry cases, 1,474 Japanese ancestry controls	14 Japanese ancestry cases, 774 Japanese ancestry controls	8p21.2	intergenic	rs79301185-A	0.01	3E-7		8.08	[7.27-8.88]	NR [7215020] (imputed)	N
789	chr8	26857692	26857693	rs7842266	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Sub-cortical grey matter volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	8p21.2	NR	rs7842266-?		6E-6				Illumina [4322238] (imputed)	N
790	chr8	26869784	26869785	rs9693865	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Isthmus-cingulate cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	8p21.2	LOC100132229	rs9693865-?		6E-6				Illumina [4322238] (imputed)	N
790	chr8	26894543	26894544	rs7461897	26220383	Jang HW	2015-06-02	Epilepsy Res	GWAS identifies two susceptibility loci for lamotrigine-induced skin rash in patients with epilepsy.	Epilepsy and lamotrigine-induced maculopapular eruptions	34 Korean ancestry cases, 1,080 Korean ancestry healthy controls	NA	8p21.2	MIR548H4	rs7461897-?	0.08	5E-7		4.1	[NR]	Affymetrix [4893794] (imputed)	N
790	chr8	26908273	26908274	rs17362645	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8p21.2	NR	rs17362645-C	0.03659	5E-9	(CAPNS1)	0.01652	NR unit increase	Illumina [1671387] (imputed)	N
790	chr8	26922111	26922112	rs17060993	24375517	Lohmann K	2013-12-26	Mov Disord	Genome-wide association study in musician's dystonia: a risk variant at the arylsulfatase G locus?	Musician's dystonia	127 European ancestry cases, 984 European ancestry controls	116 European ancestry cases, 125 European ancestry controls	8p21.2	NR	rs17060993-?	0.03	2E-6		2.7	[1.80-4.06]	Affymetrix [557620]	N
790	chr8	26932418	26932419	rs111962770	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8p21.2	NR	rs111962770-C	0.03484	2E-9	(CAPNS1)	0.01739	NR unit increase	Illumina [1671387] (imputed)	N
790	chr8	26989083	26989084	rs117685664	34407845	Morra A	2021-08-18	Breast Cancer Res	Association of germline genetic variants with breast cancer-specific survival in patient subgroups defined by clinic-pathological variables related to tumor biology and type of systemic treatment.	5-year breast cancer-specific survival (ER negative treated with chemotherapy)	6,411 European ancestry individuals	NA	8p21.2		rs117685664-?	NR	5E-8		0.26	[0.16-0.42]	NR [10000000] (imputed)	N
790	chr8	26994606	26994607	rs62503665	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Alloprevotella abundance in stool	5,959 Finnish ancestry individuals	NA	8p21.2		rs62503665-A	0.0119228	1E-8		0.312114	[0.21-0.42] unit increase	Illumina [7980478] (imputed)	N
791	chr8	27067262	27067263	rs140901272	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	8p21.2		rs140901272-T	NR	4E-8		0.0672	[0.043-0.091] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
791	chr8	27076597	27076598	rs1446682	20889312	Wang KS	2010-10-01	Schizophr Res	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	8p21.2	NR	rs1446682-?	NR	6E-6		1.2633	[NR]	Affymetrix [722112]	N
791	chr8	27101278	27101279	rs3739214	31790847	Hou R	2019-11-29	Bone	Genetic variants affecting bone mineral density and bone mineral content at multiple skeletal sites in Hispanic children.	Bone mineral density	1,030 Hispanic or Latin American children	NA	8p21.2	STMN4	rs3739214-A	0.34	2E-7	(lumbar spine)	0.29	[0.17-0.41] g/cm2 decrease	Illumina [> 1100000]	N
791	chr8	27101278	27101279	rs3739214	31790847	Hou R	2019-11-29	Bone	Genetic variants affecting bone mineral density and bone mineral content at multiple skeletal sites in Hispanic children.	Bone mineral content	1,030 Hispanic or Latin American children	NA	8p21.2	STMN4	rs3739214-A	0.34	7E-7	(pelvis)	0.28	[0.16-0.4] g decrease	Illumina [> 1100000]	N
791	chr8	27101278	27101279	rs3739214	31790847	Hou R	2019-11-29	Bone	Genetic variants affecting bone mineral density and bone mineral content at multiple skeletal sites in Hispanic children.	Bone mineral content	1,030 Hispanic or Latin American children	NA	8p21.2	STMN4	rs3739214-A	0.34	6E-6	(lumbar spine)	0.27	[0.15-0.39] g decrease	Illumina [> 1100000]	N
791	chr8	27107875	27107876	rs77963899	34620984	Skuladottir AT	2021-10-07	Commun Biol	A genome-wide meta-analysis uncovers six sequence variants conferring risk of vertigo.	Vertigo	48,072 European ancestry cases, 894,541 European ancestry controls	NA	8p21.2		rs77963899-T	NR	6E-6		0.92524		Affymetrix, Illumina [62056310] (imputed)	N
792	chr8	27164448	27164449	rs2322605	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	8p21.2	TRIM35	rs2322605-G	0.5316000000000001	2E-9		1.0217328		Affymetrix [11880941] (imputed)	N
792	chr8	27164873	27164874	rs76694908	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	8p21.2	TRIM35	rs76694908-C	0.950702854	2E-6		1.1358638	[1.08-1.2]	Illumina [10439017] (imputed)	N
792	chr8	27175283	27175284	rs73241444	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	8p21.2		rs73241444-T	0.079444	8E-6		0.055299	[0.031-0.08] unit increase	Affymetrix [15580782] (imputed)	N
792	chr8	27195120	27195121	rs28834970	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	8p21.2		rs28834970-T	0.6474	1E-8		42.383987	z score increase	NR [6814003]	N
792	chr8	27195120	27195121	rs28834970	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	8p21.2		rs28834970-C	NR	8E-11		0.0139	[0.0098-0.018] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
792	chr8	27195120	27195121	rs28834970	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	286 European ancestry cases, 2,652 European ancestry controls, 76 Han Chinese ancestry cases, 889 Han Chinese ancestry controls, 46 South Asian ancestry cases, 501 South Asian ancestry controls, 683 Turkish ancestry cases, 1,721 Turkish ancestry controls	NA	8p21.2	PTK2B	rs28834970-C	NR	1E-9		0.7143	NR	Illumina [up to 4495750] (imputed)	N
792	chr8	27195120	27195121	rs28834970	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8p21.2	NR	rs28834970-C	0.32825	4E-13				Affymetrix, Illumina [24649327] (imputed)	N
792	chr8	27195120	27195121	rs28834970	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	8p21.2	NR	rs28834970-C	0.363292	1E-14		0.014705	[0.011-0.018] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
792	chr8	27195120	27195121	rs28834970	31473137	Moreno-Grau S	2019-08-13	Alzheimers Dement	Genome-wide association analysis of dementia and its clinical endophenotypes reveal novel loci associated with Alzheimer's disease and three causality networks: The GR@ACE project.	Alzheimer's disease	4,120 Spanish ancestry cases, 17,008 cases, 3,289 Spanish ancestry controls, 37,154 controls	1,943 Spanish ancestry cases, 8,572 cases, 3,016 Spanish ancestry controls, 11,312 controls	8p21.2	PTK2B	rs28834970-?	NR	6E-9		1.09	[1.12-1.06]	Affymetrix [up to 7055881] (imputed)	N
792	chr8	27195120	27195121	rs28834970	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Family history of Alzheimer's disease	47,793 European ancestry cases, 328,320 European ancestry controls	NA	8p21.2	PTK2B	rs28834970-C	NR	2E-7		0.008589	NR unit increase	Affymetrix [10847151] (imputed)	N
792	chr8	27195120	27195121	rs28834970	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	8p21.2	PTK2B	rs28834970-C	0.3644	1E-11		6.8	NR z-unit increase	Affymetrix, Illumina [up to 10847151] (imputed)	N
792	chr8	27195120	27195121	rs28834970	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease (late onset)	24,087 European ancestry cases, 55,058 European ancestry controls	NA	8p21.2	PTK2B	rs28834970-C	NR	7E-8		5.39	NR z-score increase	Illumina [up to 9862738] (imputed)	N
792	chr8	27195120	27195121	rs28834970	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 European ancestry individuals with no parental history of Alzheimer's disease	NA	8p21.2	NR	rs28834970-?	NR	7E-6		1.0458187		Affymetrix [7795605] (imputed)	N
792	chr8	27195120	27195121	rs28834970	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	8p21.2	NR	rs28834970-?	NR	6E-16		1.0666256	[1.05003132808944-1.08348207689744]	Affymetrix [7795605] (imputed)	N
792	chr8	27195120	27195121	rs28834970	24162737	Lambert JC	2013-10-27	Nat Genet	Meta-analysis of 74,046 individuals identifies 11 new susceptibility loci for Alzheimer's disease.	Alzheimer's disease (late onset)	17,008 European ancestry cases, 37,154 European ancestry controls	8,572 European ancestry cases, 11,312 European ancestry controls	8p21.2	PTK2B	rs28834970-C	0.366	7E-14		1.1	[1.08-1.13]	Illumina [7055881] (imputed)	N
792	chr8	27208125	27208126	rs6987305	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	8p21.2		rs6987305-?	NR	1E-10				NR [~ 8900000] (imputed)	N
792	chr8	27211332	27211333	rs7834529	31790847	Hou R	2019-11-29	Bone	Genetic variants affecting bone mineral density and bone mineral content at multiple skeletal sites in Hispanic children.	Bone mineral content	1,030 Hispanic or Latin American children	NA	8p21.2	PTK2B	rs7834529-C	0.35	9E-7	(left arm)	0.24	[0.14-0.34] g decrease	Illumina [> 1100000]	N
792	chr8	27211332	27211333	rs7834529	31790847	Hou R	2019-11-29	Bone	Genetic variants affecting bone mineral density and bone mineral content at multiple skeletal sites in Hispanic children.	Bone mineral content	1,030 Hispanic or Latin American children	NA	8p21.2	PTK2B	rs7834529-C	0.35	1E-6	(right arm)	0.24	[0.14-0.34] g decrease	Illumina [> 1100000]	N
792	chr8	27211909	27211910	rs2322599	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	683 Turkish ancestry cases, 1,721 Turkish ancestry controls	NA	8p21.2	PTK2B	rs2322599-A	0.3542	2E-6		0.7166	[0.6238-0.8231]	Illumina [4495750] (imputed)	N
792	chr8	27211909	27211910	rs2322599	30498034	Terao C	2018-11-29	Proc Natl Acad Sci U S A	Genetic determinants and an epistasis of LILRA3 and HLA-B*52 in Takayasu arteritis.	Takayasu arteritis	411 Japanese ancestry cases, 2,158 Japanese ancestry controls	219 Japanese ancestry cases, 3,770 Japanese ancestry controls	8p21.2	PTK2B	rs2322599-G	0.79	3E-13		1.94	[1.62-2.31]	Illumina [5878075] (imputed)	N
792	chr8	27212275	27212276	rs10109834	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	8p21.2	NR	rs10109834-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
792	chr8	27219986	27219987	rs73223431	33589840	Schwartzentruber J	2021-02-15	Nat Genet	Genome-wide meta-analysis, fine-mapping and integrative prioritization implicate new Alzheimer's disease risk genes.	Alzheimer's disease or family history of Alzheimer's disease	472,868 European ancestry individuals	NA	8p21.2	CLU	rs73223431-?	NR	2E-15		0.0790484	unit increase	NR [10687077] (imputed)	N
792	chr8	27219986	27219987	rs73223431	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	8p21.2	PTK2B	rs73223431-T	0.365998	2E-11		0.01532292	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
792	chr8	27226789	27226790	rs755951	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	8p21.2		rs755951-C	NR	1E-13		0.0161	[0.012-0.02] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
792	chr8	27226789	27226790	rs755951	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	8p21.2	PTK2B	rs755951-C	0.403104	1E-13		0.016835572	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
792	chr8	27226789	27226790	rs755951	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8p21.2	NR	rs755951-C	0.377815	6E-15				Affymetrix, Illumina [23467995] (imputed)	N
792	chr8	27226789	27226790	rs755951	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	8p21.2	NR	rs755951-C	0.403323	1E-16		0.015948	[0.012-0.02] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
792	chr8	27227553	27227554	rs17057051	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	8p21.2	PTK2B, TRIM35, EPHX2	rs17057051-A	0.69	6E-8	(EA)	1.060473		Affymetrix, Illumina [~ 9000000] (imputed)	N
792	chr8	27227553	27227554	rs17057051	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	8p21.2	PTK2B, TRIM35, EPHX2	rs17057051-A	0.69	2E-6	(EA)	1.0649383	[1.04-1.09]	Affymetrix, Illumina [~ 9000000] (imputed)	N
792	chr8	27251324	27251325	rs13260543	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	8p21.2	PTK2B	rs13260543-?	NR	9E-6		1.4285715	[NR]	Illumina [up to 547389]	N
792	chr8	27257786	27257787	rs2322718	35023831	Chong M	2022-01-13	Elife	GWAS and ExWAS of blood Mitochondrial DNA copy number identifies 71 loci and highlights a potential causal role in dementia.	Mitochondrial DNA copy number	395,718 British, Irish, Other White, South Asian, African ancestry individuals	NA	8p21.2	NR	rs2322718-G	0.346046	2E-10		0.0136	[0.0095-0.0177] unit increase	Affymetrix [23037915] (imputed)	N
792	chr8	27260483	27260484	rs7005183	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	8p21.2	PTK2B	rs7005183-?	0.6	6E-6	(Turkish)	1.5384616	[1.28-1.85]	Illumina [up to 547389]	N
792	chr8	27261137	27261138	rs117176448	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		8p21.2	PTK2B	rs117176448-C	0.903818	1E-10		0.0149728	[0.01-0.02] unit decrease	Affymetrix [12370749]	N
792	chr8	27261137	27261138	rs117176448	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	8p21.2	NR	rs117176448-?	NR	8E-12				Affymetrix [~ 8270000] (imputed)	N
792	chr8	27261137	27261138	rs117176448	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	8p21.2		rs117176448-?	NR	6E-12				NR [~ 8900000] (imputed)	N
792	chr8	27261137	27261138	rs117176448	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	8p21.2	NA	rs117176448-C	0.9067	7E-11		0.0213	[0.015-0.028] unit decrease	NR [~ 27400000] (imputed)	N
793	chr8	27263106	27263107	rs10088702	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8p21.2	NR	rs10088702-T	0.253892	1E-11				Affymetrix, Illumina [19872809] (imputed)	N
793	chr8	27263106	27263107	rs10088702	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	8p21.2	NR	rs10088702-T	0.264023	2E-13		0.016572	[0.012-0.021] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
793	chr8	27263432	27263433	rs7000615	31790847	Hou R	2019-11-29	Bone	Genetic variants affecting bone mineral density and bone mineral content at multiple skeletal sites in Hispanic children.	Bone mineral density	1,030 Hispanic or Latin American children	NA	8p21.2	PTK2B	rs7000615-C	0.36	7E-8	(pelvis)	0.28	[0.18-0.38] g/cm2 decrease	Illumina [> 1100000]	N
793	chr8	27263432	27263433	rs7000615	31790847	Hou R	2019-11-29	Bone	Genetic variants affecting bone mineral density and bone mineral content at multiple skeletal sites in Hispanic children.	Bone mineral content	1,030 Hispanic or Latin American children	NA	8p21.2	PTK2B	rs7000615-C	0.36	5E-6	(total body)	0.24	[0.14-0.34] g decrease	Illumina [> 1100000]	N
793	chr8	27263432	27263433	rs7000615	31790847	Hou R	2019-11-29	Bone	Genetic variants affecting bone mineral density and bone mineral content at multiple skeletal sites in Hispanic children.	Bone mineral content	1,030 Hispanic or Latin American children	NA	8p21.2	PTK2B	rs7000615-C	0.36	2E-7	(pelvis)	0.3	[0.18-0.42] g decrease	Illumina [> 1100000]	N
793	chr8	27284691	27284692	rs3779635	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Neuroticism	170,911 European ancestry individuals	NA	8p21.2	NR	rs3779635-T	0.434	4E-6		0.016391153	[0.0094-0.0233] unit increase	Affymetrix [up to 6544775] (imputed)	N
793	chr8	27302884	27302885	rs4733063	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	8p21.2	PTK2B	rs4733063-G	0.397535	9E-10		0.013827891	[0.0094-0.0183] unit decrease	Affymetrix [93095623] (imputed)	N
793	chr8	27306158	27306159	rs11776693	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	8p21.2		rs11776693-?	NR	3E-9				NR [~ 8900000] (imputed)	N
793	chr8	27312808	27312809	rs752993	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	8p21.2	PTK2B	rs752993-A	0.443086	4E-11		0.0147074815	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
793	chr8	27316116	27316117	rs2271920	25778476	Jun G	2015-03-17	Mol Psychiatry	A novel Alzheimer disease locus located near the gene encoding tau protein.	Alzheimer's disease in APOE e4- carriers	7,184 cases, 26,968 controls	718 European ancestry cases, 1,699 European ancestry controls	8p21.2	PTK2B	rs2271920-A	0.39	8E-6		1.11	[1.06-1.16]	NR [NR]	N
793	chr8	27319846	27319847	rs79145239	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 European ancestry individuals with no parental history of Alzheimer's disease	NA	8p21.2	NR	rs79145239-?	NR	4E-6				Affymetrix [7795605] (imputed)	N
793	chr8	27319846	27319847	rs79145239	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	8p21.2	NR	rs79145239-?	NR	1E-10				Affymetrix [7795605] (imputed)	N
793	chr8	27322973	27322974	rs34181358	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	8p21.2	CHRNA2	rs34181358-A	0.1063	3E-9		5.9258137	NR z-unit decrease	Affymetrix, Illumina [up to 10847151] (imputed)	N
793	chr8	27328020	27328021	rs2565065	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	8p21.2	NR	rs2565065-A	NR	2E-7		1.06	[NR]	Illumina [7158791] (imputed)	N
793	chr8	27330095	27330096	rs2741342	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8p21.2	NR	rs2741342-T	0.2596	1E-9	(EPHX2)	0.2123	NR unit decrease	Illumina [1671387] (imputed)	N
793	chr8	27330095	27330096	rs2741342	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	8p21.2	NR	rs2741342-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
793	chr8	27334097	27334098	rs71519637	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Cigarettes smoked per day (MTAG)	up to 403,928 European ancestry individuals	NA	8p21.2	NR	rs71519637-T	0.103	9E-9		0.0207781	[0.014-0.028] unit increase	NR [9732723] (imputed)	N
793	chr8	27336766	27336767	rs2565060	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking status (current vs never)	40,456 European ancestry current smokers, 13,511 African American current smokers, 2,920 Hispanic current smokers, 59,056 European ancestry mostly never smokers, 17,751 African American mostly never smokers, 7,195 Hispanic mostly never smokers	NA	8p21.2	CHRNA2	rs2565060-A		1E-10		1.08	[NR]	Affymetrix [~ 79000000] (imputed)	N
793	chr8	27336766	27336767	rs2565060	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking status (current vs mixed)	40,456 European ancestry current smokers, 13,511 African American current smokers, 2,920 Hispanic current smokers, 110,403 European ancestry mixed smokers, 23,605 African American mixed smokers, 11,221 Hispanic mixed smokers	NA	8p21.2	CHRNA2	rs2565060-A		1E-10		1.07	[NR]	Affymetrix [~ 79000000] (imputed)	N
793	chr8	27336977	27336978	rs2565059	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	8p21.2	NR	rs2565059-A	0.202	2E-29		0.0151282	[0.012-0.018] unit decrease	NR [9732723] (imputed)	N
793	chr8	27336977	27336978	rs2565059	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	8p21.2	NR	rs2565059-A	0.202	4E-21		0.0171511	[0.014-0.021] unit increase	NR [9732723] (imputed)	N
793	chr8	27337790	27337791	rs2741335	26031901	Dahlin A	2015-06-02	Pharmacogenomics J	Genome-wide association study of leukotriene modifier response in asthma.	Response to zileuton treatment in asthma (FEV1 change interaction)	160 European and other ancestry zileuton-treated cases, 144 European and other ancestry placebo-controlled cases	149 European and other ancestry zileuton-treated cases, 73 European and other ancestry placebo-controlled cases	8p21.2	CHRNA2	rs2741335-?	NR	8E-6	(Additive model)	0.28	unit decrease	Illumina [542562]	N
793	chr8	27338134	27338135	rs36081056	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking cessation (MTAG)	up to 820,192 European ancestry individuals	NA	8p21.2	NR	rs36081056-C	0.671	1E-10		0.0105944	[0.0074-0.0138] unit increase	NR [9732723] (imputed)	N
793	chr8	27344718	27344719	rs11780471	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	8p21.2	NR	rs11780471-A	0.063121	2E-13	(Conditioned on chr8:27425349)	0.038677923	[0.028-0.049] unit decrease	NR [~ 10000000] (imputed)	N
793	chr8	27344718	27344719	rs11780471	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation	up to 341,427 European ancestry individuals	NA	8p21.2	NR	rs11780471-A	0.0601	9E-11		0.033	[0.023-0.043] unit increase	NR [~ 10000000] (imputed)	N
793	chr8	27344718	27344719	rs11780471	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	8p21.2	CHRNA2, EPHX2	rs11780471-G	0.940381112	2E-8		1.1515831	[1.1-1.21]	Illumina [10439017] (imputed)	N
793	chr8	27345608	27345609	rs56043631	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8p21.2	NR	rs56043631-A	0.2753	1E-9	(EPHX2)	0.2347	NR unit increase	Illumina [1671387] (imputed)	N
793	chr8	27365267	27365268	rs75770470	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	8p21.1	NR	rs75770470-?	NR	8E-6		0.1486	[0.084-0.214] unit increase	Illumina [at least 560000] (imputed)	N
793	chr8	27388198	27388199	rs10503812	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8p21.1	NR	rs10503812-A	0.2195	2E-9	(EPHX2)	0.2458	NR unit increase	Illumina [1671387] (imputed)	N
794	chr8	27394334	27394335	rs1475656035	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8p21.1	NR	rs1475656035-?	0.05575	2E-16	(EPHX2)	0.5421	NR unit decrease	Illumina [1671387] (imputed)	N
794	chr8	27397087	27397088	rs367994385	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8p21.1	NR	rs367994385-T	0.1028	6E-10	(EPHX2)	0.3132	NR unit decrease	Illumina [1671387] (imputed)	N
794	chr8	27398619	27398620	rs2269461	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	8p21.1	NR	rs2269461-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
794	chr8	27412952	27412953	rs7839435	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung adenocarcinoma	11,273 European ancestry cases,  55,483 European ancestry controls	NA	8p21.1	EPHX2, CLU	rs7839435-G	0.834514742	9E-6		1.100429	[1.05-1.15]	Illumina [10439017] (imputed)	N
794	chr8	27413985	27413986	rs56223946	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	8p21.1	CHRNA2, CLU, EPHX2, MIR6842, MIR6843, PTK2B, SCARA3	rs56223946-?		3E-9		1.098901	[1.06-1.14]	Affymetrix, Illumina [NR]	N
794	chr8	27416800	27416801	rs17057381	23259602	Wang X	2012-12-21	BMC Oral Health	Genome-wide association scan of dental caries in the permanent dentition.	Dental caries	1,483 European ancestry comparatively younger individuals, 5,960 European ancestry comparatively older individuals	NA	8p21.1	PTK2B, EPHX2	rs17057381-?	NR	4E-7	(Comparatively Younger)			Affymetrix, Illumina [~ 1400000] (imputed)	N
794	chr8	27418039	27418040	rs2741351	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking behaviour (cigarettes smoked per day)	up to 377,334 European ancestry individuals	NA	8p21.1	NR	rs2741351-C	0.826	9E-9	(Conditioned on chr8:27442127)	0.018475844	[0.012-0.025] unit increase	NR [~ 10000000] (imputed)	N
794	chr8	27418428	27418429	rs11776293	30617275	Erzurumluoglu AM	2019-01-07	Mol Psychiatry	Meta-analysis of up to 622,409 individuals identifies 40 novel smoking behaviour associated genetic loci.	Smoking initiation	324,851 European ancestry individuals, 21,962 South Asian ancestry individuals	up to 275,596 European ancestry individuals	8p21.1	EPHX2	rs11776293-T	0.12	2E-12		0.02	[0.014-0.026] unit decrease (replication)	Affymetrix, Illumina [up to 1207583] (imputed)	N
794	chr8	27419806	27419807	rs11778040	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs bipolar disorder (ordinary least squares (OLS))	40,675 schizophrenia cases, 20,352 bipolar disorder cases	NA	8p21.1		rs11778040-?	NR	5E-8		0.0129	NR unit decrease	NR [4548414] (imputed)	N
794	chr8	27419806	27419807	rs11778040	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	8p21.1	GULOP	rs11778040-C	NR	5E-8	(EA)	1.079	[1.05-1.11]	Illumina [6627481] (imputed)	N
794	chr8	27419806	27419807	rs11778040	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	8p21.1	GULOP	rs11778040-C	NR	1E-8		1.0729614	[1.05-1.1]	Illumina [6627481] (imputed)	N
794	chr8	27419806	27419807	rs11778040	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	8p21.1	intergenic	rs11778040-C	NR	8E-7		1.0649627	[1.04-1.09]	Affymetrix, Illumina [up to 5107227] (imputed)	N
794	chr8	27420781	27420782	rs2741348	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in ever smokers	23,223 European ancestry cases,  16,964 European ancestry controls	NA	8p21.1	EPHX2, CLU	rs2741348-G	0.58223113	2E-7		1.0817294	[1.05-1.11]	Illumina [10439017] (imputed)	N
794	chr8	27423061	27423062	rs4732724	33096046	Johnson EC	2020-10-20	Lancet Psychiatry	A large-scale genome-wide association study meta-analysis of cannabis use disorder.	Cannabis use disorder	17,068 European ancestry cases, 357,219 European ancestry controls, 3,848 African ancestry cases, 5,897 African ancestry controls	NA	8p21.1	CHRNA2, EPHX2	rs4732724-C		6E-9	(EA)	0.89	[0.85-0.93]	Illumina [NR] (imputed)	N
794	chr8	27423061	27423062	rs4732724	33096046	Johnson EC	2020-10-20	Lancet Psychiatry	A large-scale genome-wide association study meta-analysis of cannabis use disorder.	Cannabis use disorder	17,068 European ancestry cases, 357,219 European ancestry controls, 3,848 African ancestry cases, 5,897 African ancestry controls	NA	8p21.1	CHRNA2, EPHX2	rs4732724-C		3E-9				Illumina [NR] (imputed)	N
794	chr8	27424695	27424696	rs59724122	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	8p21.1		rs59724122-C	0.831	4E-19		0.014	[0.01-0.018] unit increase	NR [NR] (imputed)	N
794	chr8	27424695	27424696	rs59724122	31268507	Periyasamy S	2019-07-03	JAMA Psychiatry	Association of Schizophrenia Risk With Disordered Niacin Metabolism in an Indian Genome-wide Association Study.	Schizophrenia	816 Indian ancestry cases, 900 Indian ancestry controls, 505 Indian ancestry cases and 871 Indian ancestry controls from 405 families, up to 36,989 European and unknown ancestry cases, up to 113,075 European and unknown ancestry controls	NA	8p21.1	NR	rs59724122-?	NR	8E-8				Illumina [up to 5582932] (imputed)	N
794	chr8	27424695	27424696	rs59724122	29121268	Amare AT	2017-11-09	JAMA Psychiatry	Association of Polygenic Score for Schizophrenia and HLA Antigen and Inflammation Genes With Response to Lithium in Bipolar Affective Disorder: A Genome-Wide Association Study.	Bipolar disorder lithium response (categorical) or schizophrenia	704 European and East Asian ancestry lithium responder bipolar disorder cases, 1,662 European and East Asian ancestry lithium non-responder bipolar disorder controls, 36,989 schizophrenia cases, controls (see Ripke 2014 PMID:25056061).	NA	8p21.1	EPHX2	rs59724122-T		5E-9				NR [NR] (imputed)	N
794	chr8	27425348	27425349	rs11783093	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs anorexia nervosa (ordinary least squares (OLS))	40,675 schizophrenia cases, 16,992 anorexia nervosa cases	NA	8p21.1		rs11783093-?	NR	9E-9		0.019	NR unit decrease	NR [4425810] (imputed)	N
794	chr8	27425348	27425349	rs11783093	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	8p21.1		rs11783093-C	0.839	1E-16		0.023	[0.017-0.029] unit increase	Affymetrix [up to 90000000] (imputed)	N
794	chr8	27425348	27425349	rs11783093	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	8p21.1	CLU	rs11783093-T	0.1663	7E-22		0.025915962	[0.021-0.031] unit decrease	Affymetrix [11514654] (imputed)	N
794	chr8	27425348	27425349	rs11783093	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	8p21.1	NR	rs11783093-T	0.158	1E-56		0.0235194	[0.021-0.026] unit decrease	NR [9732723] (imputed)	N
794	chr8	27425348	27425349	rs11783093	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	8p21.1	NR	rs11783093-T	0.158	2E-41		0.047124278	[0.04-0.054] unit decrease	NR [~ 10000000] (imputed)	N
794	chr8	27425348	27425349	rs11783093	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	8p21.1	NR	rs11783093-T	0.152	1E-31		0.0238401	[0.02-0.028] unit increase	NR [9732723] (imputed)	N
794	chr8	27425348	27425349	rs11783093	29483656	Pardinas AF	2018-02-26	Nat Genet	Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.	Schizophrenia	40,675 European ancestry cases, 64,643 European ancestry controls	1,651 European ancestry cases, 4,111 cases, 142,717 European ancestry controls, 11,507 controls	8p21.1	CHRNA2, PTK2B, CLU, EPHX2, MIR6843	rs11783093-?	NR	8E-12		1.098	[1.07-1.12]	Illumina [8000000] (imputed)	N
794	chr8	27426076	27426077	rs1565735	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking initiation	842,717 European ancestry individuals	NA	8p21.1	EPHX2, CLU	rs1565735-A		2E-20		0.961	[NR]	Affymetrix [up to 79000000] (imputed)	N
794	chr8	27426076	27426077	rs1565735	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking initiation (ever regular vs never regular)	up to 433,216 European ancestry individuals	NA	8p21.1	EPHX2	rs1565735-A	0.201	2E-16		0.0235	[0.018-0.029] unit decrease	Illumina [~ 250000] (imputed)	N
794	chr8	27426076	27426077	rs1565735	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	8p21.1	NR	rs1565735-A	0.204463	1E-9	(Conditioned on chr8:27344719, chr8:27425349)	0.019163726	[0.013-0.025] unit decrease	NR [~ 10000000] (imputed)	N
794	chr8	27426076	27426077	rs1565735	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking cessation (MTAG)	up to 820,192 European ancestry individuals	NA	8p21.1	NR	rs1565735-A	0.199	3E-18		0.0167706	[0.013-0.021] unit decrease	NR [9732723] (imputed)	N
794	chr8	27426076	27426077	rs1565735	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking cessation	up to 547,219 European ancestry individuals	NA	8p21.1	NR	rs1565735-A	0.199	2E-12		0.034557395	[0.025-0.044] unit decrease	NR [~ 10000000] (imputed)	N
794	chr8	27426076	27426077	rs1565735	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	8p21.1		rs1565735-?	NR	9E-28				NR [~ 8900000] (imputed)	N
794	chr8	27429191	27429192	rs78277894	31089300	Matoba N	2019-03-25	Nat Hum Behav	GWAS of smoking behaviour in 165,436 Japanese people reveals seven new loci and shared genetic architecture.	Smoking behaviour (cigarettes smoked per day)	72,655 Japanese ancestry individuals	NA	8p21.1	EPHX2, CLU	rs78277894-A	0.336	6E-13		0.04	[-0.11288-0.19288] unit increase	Illumina [5961480] (imputed)	N
794	chr8	27429191	27429192	rs78277894	31089300	Matoba N	2019-03-25	Nat Hum Behav	GWAS of smoking behaviour in 165,436 Japanese people reveals seven new loci and shared genetic architecture.	Smoking behaviour (cigarettes smoked per day)	58,784 Japanese ancestry males	NA	8p21.1	EPHX2, CLU	rs78277894-A	0.336	1E-13		0.046	[-0.15-0.242] unit increase	Illumina [6108828] (imputed)	N
794	chr8	27436499	27436500	rs56372821	31209380	Demontis D	2019-06-17	Nat Neurosci	Genome-wide association study implicates CHRNA2 in cannabis use disorder.	Cannabis use disorder	2,387 Danish ancestry cases, 48,985 Danish ancestry controls	5,501 Icelandic ancestry cases, 301,041 Icelandic ancestry controls	8p21.1	CHRNA2	rs56372821-G	0.856	9E-12		1.25	[NR]	Illumina [8969939] (imputed)	N
794	chr8	27441520	27441521	rs4732728	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	8p21.1	NR	rs4732728-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
794	chr8	27442063	27442064	rs7844965	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (father's age at death)	309,383 European ancestry individuals	NA	8p21.1	NR	rs7844965-A	NR	9E-6		0.01335	[0.0075-0.0192] unit increase	Illumina [541614]	N
794	chr8	27442063	27442064	rs7844965	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (father's age at death or father's attained age)	up to 699,000 European ancestry individuals	NA	8p21.1	NR	rs7844965-G		6E-10				Illumina [458865]	N
794	chr8	27442063	27442064	rs7844965	29227965	Pilling LC	2017-12-01	Aging (Albany NY)	Human longevity: 25 genetic loci associated in 389,166 UK biobank participants.	Parental longevity (father's attained age)	415,311 British ancestry individuals	NA	8p21.1	EPHX2	rs7844965-G	NR	2E-7				Affymetrix [11535925] (imputed)	N
794	chr8	27442063	27442064	rs7844965	29227965	Pilling LC	2017-12-01	Aging (Albany NY)	Human longevity: 25 genetic loci associated in 389,166 UK biobank participants.	Parental longevity (combined parental attained age, Martingale residuals)	389,166 British ancestry individuals	NA	8p21.1	EPHX2	rs7844965-G	0.768	8E-9		0.0154	[0.01-0.021] unit increase	Affymetrix [11535925] (imputed)	N
794	chr8	27442126	27442127	rs73229090	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	8p21.1	NR	rs73229090-?	NR	1E-8		1.1088196	[1.07-1.14]	Affymetrix, Illumina [12447948] (imputed)	N
794	chr8	27442126	27442127	rs73229090	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking behaviour (cigarettes smoked per day)	up to 377,334 European ancestry individuals	NA	8p21.1	NR	rs73229090-A	0.112	1E-11		0.026211383	[0.019-0.034] unit increase	NR [~ 10000000] (imputed)	N
794	chr8	27442126	27442127	rs73229090	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	8p21.1	NR	rs73229090-C	NR	2E-8		1.098901	[NR]	Illumina [7158791] (imputed)	N
794	chr8	27442126	27442127	rs73229090	25056061	Ripke S	2014-07-22	Nature	Biological insights from 108 schizophrenia-associated genetic loci.	Schizophrenia	32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	1,513 European ancestry cases, 66,236 European ancestry controls	8p21.1	CLU, EPHX2	rs73229090-C	0.884	2E-8		1.1013216	[1.06-1.14]	Affymetrix, Illumina [9005918] (imputed)	N
794	chr8	27452846	27452847	rs17466684	19165232	Otowa T	2009-01-23	J Hum Genet	Genome-wide association study of panic disorder in the Japanese population.	Panic disorder	200 Japanese ancestry cases, 200 Japanese ancestry controls	NA	8p21.1	CLU	rs17466684-?	0.09	7E-7				Affymetrix [253903]	N
794	chr8	27456252	27456253	rs2279590	30805717	Zhu Z	2019-02-25	Hum Genet	Shared genetic architecture between metabolic traits and Alzheimer's disease: a large-scale genome-wide cross-trait analysis.	Alzheimer's disease or fasting insulin levels (pleiotropy)	54,162 European ancestry cases, 51,750 European ancestry individuals	NA	8p21.1	CLU, MIR6843	rs2279590-?		1E-17				NR [NR]	N
794	chr8	27456252	27456253	rs2279590	25778476	Jun G	2015-03-17	Mol Psychiatry	A novel Alzheimer disease locus located near the gene encoding tau protein.	Alzheimer's disease in APOE e4- carriers	7,184 cases, 26,968 controls	718 European ancestry cases, 1,699 European ancestry controls	8p21.1	CLU	rs2279590-C	0.6	2E-6		1.1235955	[1.08-1.18]	NR [NR]	N
794	chr8	27462480	27462481	rs7982	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	8p21.1		rs7982-A	0.3937	3E-16		78.658066	z score increase	NR [6814003]	N
794	chr8	27462480	27462481	rs7982	33637690	He L	2021-02-26	Transl Psychiatry	Exome-wide age-of-onset analysis reveals exonic variants in ERN1 and SPPL2C associated with Alzheimer's disease.	Alzheimer's disease (age of onset)	10,216 European ancestry individuals	9,261 European ancestry individuals	8p21.1		rs7982-?	NR	1E-7		0.89		NR [110450]	N
794	chr8	27463617	27463618	rs9331908	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	8p21.1	NR	rs9331908-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
794	chr8	27464518	27464519	rs11136000	19734902	Harold D	2009-09-06	Nat Genet	Genome-wide association study identifies variants at CLU and PICALM associated with Alzheimer's disease.	Alzheimer's disease	3,941 European ancestry cases, 7,848 European ancestry controls	2,023 European ancestry cases, 2,340 European ancestry controls		CLU	rs11136000-?	0.60	9E-10		1.16	[1.11-1.22]	Illumina [529205]	N
794	chr8	27464928	27464929	rs4236673	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	8p21.1	CLU, PTK2B	rs4236673-A	0.391	3E-19		8.98	NR z-unit decrease	Affymetrix, Illumina [up to 10847151] (imputed)	N
794	chr8	27464928	27464929	rs4236673	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease (late onset)	24,087 European ancestry cases, 55,058 European ancestry controls	NA	8p21.1	CLU, PTK2B	rs4236673-A	NR	6E-20		9.13808	NR z-score decrease	Illumina [up to 9862738] (imputed)	N
794	chr8	27464928	27464929	rs4236673	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 European ancestry individuals with no parental history of Alzheimer's disease	NA	8p21.1	NR	rs4236673-?	NR	1E-7				Affymetrix [7795605] (imputed)	N
794	chr8	27464928	27464929	rs4236673	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	8p21.1	NR	rs4236673-?	NR	4E-25				Affymetrix [7795605] (imputed)	N
794	chr8	27466156	27466157	rs1532276	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	8p21.1	CLU, SCARA3, CCDC25	rs1532276-?		3E-16				Affymetrix, Illumina [NR] (imputed)	N
794	chr8	27466314	27466315	rs1532278	34493870	Wightman DP	2021-09-07	Nat Genet	A genome-wide association study with 1,126,563 individuals identifies new risk loci for Alzheimer's disease.	Late-onset Alzheimer's disease	90,338 cases, 1,036,225 controls	NA	8p21.1		rs1532278-?	NR	2E-22				Illumina [NR] (imputed)	N
794	chr8	27466314	27466315	rs1532278	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Family history of Alzheimer's disease	47,793 European ancestry cases, 328,320 European ancestry controls	NA	8p21.1	CLU, PTK2B	rs1532278-T	NR	7E-9		5.781	NR z-score decrease	Affymetrix [10847151] (imputed)	N
794	chr8	27466314	27466315	rs1532278	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	8p21.1	CLU	rs1532278-T	0.3837	1E-8		5.688	[NR] z score decrease	Affymetrix, Illumina [~ 11000000] (imputed)	N
794	chr8	27466314	27466315	rs1532278	28714976	Sims R	2017-09-01	Nat Genet	Rare coding variants in PLCG2, ABI3, and TREM2 implicate microglial-mediated innate immunity in Alzheimer's disease.	Alzheimer's disease (late onset)	up to 16,097 European ancestry cases, up to 18,077 European ancestry controls	up to 20,693 European ancestry cases, up to 30,266 European ancestry controls	8p21.1	CLU	rs1532278-?	NR	6E-10		1.1177499		Illumina [241551]	N
794	chr8	27466314	27466315	rs1532278	21460841	Naj AC	2011-04-03	Nat Genet	Common variants at MS4A4/MS4A6E, CD2AP, CD33 and EPHA1 are associated with late-onset Alzheimer's disease.	Alzheimer's disease (late onset)	8,309 European ancestry cases, 7,366 European ancestry controls	10,523 European ancestry cases, 28,231 European ancestry controls	8p21.1	CLU	rs1532278-?	0.64	8E-8		1.12	[1.08-1.18]	Affymetrix, Illumina [2324889] (imputed)	N
794	chr8	27467685	27467686	rs9331896	31473137	Moreno-Grau S	2019-08-13	Alzheimers Dement	Genome-wide association analysis of dementia and its clinical endophenotypes reveal novel loci associated with Alzheimer's disease and three causality networks: The GR@ACE project.	Alzheimer's disease	4,120 Spanish ancestry cases, 17,008 cases, 3,289 Spanish ancestry controls, 37,154 controls	1,943 Spanish ancestry cases, 8,572 cases, 3,016 Spanish ancestry controls, 11,312 controls	8p21.1	CLU	rs9331896-?	NR	6E-15		1.1363636	[1.16-1.1]	Affymetrix [up to 7055881] (imputed)	N
794	chr8	27467685	27467686	rs9331896	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Family history of Alzheimer's disease	47,793 European ancestry cases, 328,320 European ancestry controls	NA	8p21.1	CLU	rs9331896-C	NR	6E-8		0.008992	NR unit decrease	Affymetrix [10847151] (imputed)	N
794	chr8	27467685	27467686	rs9331896	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	8p21.1	CLU	rs9331896-C	0.4107	7E-17		8.35	NR z-unit decrease	Affymetrix, Illumina [up to 10847151] (imputed)	N
794	chr8	27467685	27467686	rs9331896	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease (late onset)	24,087 European ancestry cases, 55,058 European ancestry controls	NA	8p21.1	CLU	rs9331896-C	NR	1E-18		8.82	NR z-score decrease	Illumina [up to 9862738] (imputed)	N
794	chr8	27467685	27467686	rs9331896	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Maternal history of Alzheimer's disease	27,696 British ancestry cases, 260,980 British ancestry controls	NA	8p21.1	NR	rs9331896-?	NR	1E-6		1.0626189	NR	Affymetrix [7795605] (imputed)	N
794	chr8	27467685	27467686	rs9331896	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 European ancestry individuals with no parental history of Alzheimer's disease	NA	8p21.1	NR	rs9331896-?	NR	2E-7		1.0531651		Affymetrix [7795605] (imputed)	N
794	chr8	27467685	27467686	rs9331896	25778476	Jun G	2015-03-17	Mol Psychiatry	A novel Alzheimer disease locus located near the gene encoding tau protein.	Alzheimer's disease in APOE e4+ carriers	10,352 cases, 9,207 controls	1,250 European ancestry cases, 536 European ancestry controls	8p21.1	CLU	rs9331896-T	0.62	3E-9		1.1904762	[1.12-1.25]	NR [NR]	N
794	chr8	27467685	27467686	rs9331896	24162737	Lambert JC	2013-10-27	Nat Genet	Meta-analysis of 74,046 individuals identifies 11 new susceptibility loci for Alzheimer's disease.	Alzheimer's disease (late onset)	17,008 European ancestry cases, 37,154 European ancestry controls	8,572 European ancestry cases, 11,312 European ancestry controls	8p21.1	CLU	rs9331896-T	0.621	3E-25		1.1628	[1.12-1.19]	Illumina [7055881] (imputed)	N
794	chr8	27468502	27468503	rs867230	33589840	Schwartzentruber J	2021-02-15	Nat Genet	Genome-wide meta-analysis, fine-mapping and integrative prioritization implicate new Alzheimer's disease risk genes.	Alzheimer's disease or family history of Alzheimer's disease	472,868 European ancestry individuals	NA	8p21.1	CLU	rs867230-?	NR	8E-26		0.105124	unit decrease	NR [10687077] (imputed)	N
794	chr8	27486915	27486916	rs576748	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	8p21.1	NR	rs576748-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
794	chr8	27487789	27487790	rs569214	21627779	Antunez C	2011-05-31	Genome Med	The membrane-spanning 4-domains, subfamily A (MS4A) gene cluster contains a common variant associated with Alzheimer's disease.	Alzheimer's disease	319 European ancestry cases, 769 European ancestry controls, 2,690 cases, 2,237 controls	4,982 European ancestry cases, 7,961 European ancestry controls, 2,190 cases, 3,374 controls	8p21.1	CLU	rs569214-?	NR	4E-8		1.14	[NR]	Affymetrix, Illumina [696707] (imputed)	N
794	chr8	27489958	27489959	rs485902	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	8p21.1	NR	rs485902-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
794	chr8	27513270	27513271	rs519238	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	8p21.1	NR	rs519238-?	NR	3E-9				Affymetrix [NR]	N
795	chr8	27548708	27548709	rs34951274	31564439	Fang H	2019-09-26	Am J Hum Genet	Harmonizing Genetic Ancestry and Self-identified Race/Ethnicity in Genome-wide Association Studies.	Height	up to 248,507 non-Hispanic white individuals, up to 68,155 non-Hispanic black individuals, up to 25,847 Hispanic individuals, up to 3,054 Asian ancestry individuals	NA	8p21.1	NR	rs34951274-?	NR	8E-8				Affymetrix [723305]	N
795	chr8	27548708	27548709	rs34951274	31564439	Fang H	2019-09-26	Am J Hum Genet	Harmonizing Genetic Ancestry and Self-identified Race/Ethnicity in Genome-wide Association Studies.	Height	up to 248,507 non-Hispanic white individuals, up to 68,155 non-Hispanic black individuals, up to 25,847 Hispanic individuals, up to 3,054 Asian ancestry individuals	NA	8p21.1	NR	rs34951274-?	NR	2E-9	(EA)	0.05	NR unit increase	Affymetrix [723305]	N
795	chr8	27556525	27556526	rs4545046	26545630	Deming Y	2015-09-25	Neurobiol Aging	A potential endophenotype for Alzheimer's disease: cerebrospinal fluid clusterin.	Plasma clusterin levels	521 Alzheimer's disease cases, 297 controls	NA	8p21.1	LOC646843	rs4545046-?		7E-6				Illumina [5970354] (imputed)	N
795	chr8	27560650	27560651	rs17384485	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	8p21.1		rs17384485-T	NR	1E-14		0.0103	[0.0078-0.0128] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
795	chr8	27569970	27569971	rs557942	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	8p21.1	MIR3622B, CCDC25	rs557942-?	NR	1E-7		0.015676385	[0.0098-0.0215] unit decrease	Illumina [27896057] (imputed)	N
795	chr8	27586200	27586201	rs13282289	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	8p21.1		rs13282289-?	NR	8E-20				NR [~ 8900000] (imputed)	N
795	chr8	27592577	27592578	rs187681790	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Chronic sinus infection	5,291 European ancestry cases, 79,622 European ancestry controls	NA	8p21.1	NR	rs187681790-?	NR	9E-6		2.0377	[0.86-3.22] unit decrease	Illumina [at least 560000] (imputed)	N
795	chr8	27596785	27596786	rs181819445	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SCARA5	5,361 Icelandic ancestry individuals	NA	8p21.1		rs181819445-G	0.01211	1E-18		0.784432	[0.61-0.96] unit decrease	Illumina [7506463] (imputed)	N
795	chr8	27630151	27630152	rs7842666	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	8p21.1	CCDC25	rs7842666-?	NR	1E-11		0.024545241	[0.017-0.032] unit decrease	Illumina [27896057] (imputed)	N
796	chr8	27667792	27667793	rs1052873	31164008	Mullins N	2019-06-05	Am J Psychiatry	GWAS of Suicide Attempt in Psychiatric Disorders and Association With Major Depression Polygenic Risk Scores.	Suicide attempts in bipolar disorder	3,264 European ancestry attempters, 5,500 European ancestry nonattempters	NA	8p21.1	NR	rs1052873-C	0.78	2E-6		1.2048193	[1.12-1.32]	NR [8807005] (imputed)	N
796	chr8	27698236	27698237	rs1551720	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	8p21.1	NR	rs1551720-?	NR	3E-8				Illumina [7760689] (imputed)	N
796	chr8	27699714	27699715	rs11136012	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	8p21.1		rs11136012-C	NR	2E-8		0.011	[0.0071-0.0149] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
796	chr8	27699714	27699715	rs11136012	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	8p21.1		rs11136012-?	NR	1E-7				NR [~ 8900000] (imputed)	N
796	chr8	27733436	27733437	rs184024600	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	8p21.1		rs184024600-?	NR	4E-8				NR [~ 8900000] (imputed)	N
796	chr8	27738027	27738028	rs28810390	33742053	Wells HRR	2021-03-19	Sci Rep	Genome-wide association study suggests that variation at the RCOR1 locus is associated with tinnitus in UK Biobank.	Tinnitus (severest)	87,314 British ancestry individuals	NA	8p21.1	NR	rs28810390-A	NR	5E-7		0.0103749	[0.0063-0.0144] unit decrease	Affymetrix [9740198] (imputed)	N
796	chr8	27740416	27740417	rs11774576	23648065	Low SK	2013-05-04	Cancer Sci	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (cisplatin)	176 Japanese ancestry cases, 471 Japanese ancestry controls	NA	8p21.1	SCARA5	rs11774576-A	0.581	3E-6	(Dominant model)	1.699	[1.307-2.208]	Illumina [733202]	N
796	chr8	27767065	27767066	rs17058204	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TNC	5,367 Icelandic ancestry individuals	NA	8p21.1		rs17058204-A	0.09477	8E-21		0.300221	[0.24-0.36] unit increase	Illumina [7506463] (imputed)	N
796	chr8	27767275	27767276	rs58646328	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PRELP	5,365 Icelandic ancestry individuals	NA	8p21.1		rs58646328-A	0.09415	6E-9		0.187731	[0.12-0.25] unit increase	Illumina [7506463] (imputed)	N
796	chr8	27769366	27769367	rs28588017	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SFTPC	5,364 Icelandic ancestry individuals	NA	8p21.1		rs28588017-G	0.09494	2E-18		0.278715	[0.22-0.34] unit increase	Illumina [7506463] (imputed)	N
796	chr8	27769366	27769367	rs28588017	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FAM163A	5,363 Icelandic ancestry individuals	NA	8p21.1		rs28588017-G	0.09494	1E-17		0.269624	[0.21-0.33] unit increase	Illumina [7506463] (imputed)	N
796	chr8	27769366	27769367	rs28588017	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein EVA1C	5,362 Icelandic ancestry individuals	NA	8p21.1		rs28588017-G	0.09494	3E-8		0.177932	[0.11-0.24] unit increase	Illumina [7506463] (imputed)	N
796	chr8	27769366	27769367	rs28588017	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CETP	5,363 Icelandic ancestry individuals	NA	8p21.1		rs28588017-G	0.09494	3E-10		0.20234	[0.14-0.27] unit increase	Illumina [7506463] (imputed)	N
796	chr8	27778147	27778148	rs55829013	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	Factor VIII levels	25,897 European ancestry individuals, 4,500 African American individuals, 773 Asian ancestry individuals, 1,440 Hispanic individuals	NA	8p21.1	SCARA5	rs55829013-?	NR	6E-10				Affymetrix, Illumina [13887196] (imputed)	N
796	chr8	27778147	27778148	rs55829013	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	Factor VIII levels	25,897 European ancestry individuals, 4,500 African American individuals, 773 Asian ancestry individuals, 1,440 Hispanic individuals	NA	8p21.1	SCARA5	rs55829013-?	NR	3E-10	(EA)			Affymetrix, Illumina [13887196] (imputed)	N
797	chr8	27787983	27787984	rs2727013	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	8p21.1	NR	rs2727013-A	0.66984375	7E-18	(CETP, 7131_207_3)	0.22344409	[0.17-0.27] unit decrease	Illumina [> 1000000] (imputed)	N
797	chr8	27787983	27787984	rs2727013	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	8p21.1	NR	rs2727013-A	0.66984375	3E-10	(EVA1C, 7008_13_3)	0.16456905	[0.11-0.22] unit decrease	Illumina [> 1000000] (imputed)	N
797	chr8	27787983	27787984	rs2727013	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	8p21.1	NR	rs2727013-A	0.66984375	2E-13	(PRELP, 5675_6_3)	0.19099998	[0.14-0.24] unit decrease	Illumina [> 1000000] (imputed)	N
797	chr8	27787983	27787984	rs2727013	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	8p21.1	NR	rs2727013-A	0.66984375	1E-22	(SCARA5, 10419_1_3)	0.2574923	[0.21-0.31] unit increase	Illumina [> 1000000] (imputed)	N
797	chr8	27787983	27787984	rs2727013	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	8p21.1	NR	rs2727013-A	0.66984375	1E-17	(SFTPC, 5738_25_3)	0.22056426	[0.17-0.27] unit decrease	Illumina [> 1000000] (imputed)	N
797	chr8	27787983	27787984	rs2727013	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	8p21.1	NR	rs2727013-A	0.66984375	1E-16	(FAM163A, 6260_14_3)	0.21230803	[0.16-0.26] unit decrease	Illumina [> 1000000] (imputed)	N
797	chr8	27787983	27787984	rs2727013	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	8p21.1	NR	rs2727013-A	0.66984375	1E-14	(TNC, 4155_3_2)	0.19953209	[0.15-0.25] unit decrease	Illumina [> 1000000] (imputed)	N
797	chr8	27790845	27790849	rs200343341	30718321	Sanchez-Roige S	2019-02-04	J Neurosci	Genome-wide association studies of impulsive personality traits (BIS-11 and UPPSP) and drug experimentation in up to 22,861 adult research participants identify loci in the CACNA1I and CADM2 genes.	Lack of premeditation	22,774 European ancestry individuals	NA	8p21.1	SCARA5	rs200343341-?	0.9698	8E-7		0.13	[0.078-0.181] unit increase	Illumina [11455628] (imputed)	N
797	chr8	27803598	27803599	rs4276643	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein POFUT2	5,358 Icelandic ancestry individuals	NA	8p21.1		rs4276643-C	0.352	2E-13		0.138455	[0.1-0.18] unit increase	Illumina [7506463] (imputed)	N
797	chr8	27803598	27803599	rs4276643	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	8p21.1	SCARA5	rs4276643-T	0.68	6E-27	(EA)	0.0289	[0.024-0.034] unit decrease	Affymetrix, Illumina [10537485] (imputed)	N
797	chr8	27803598	27803599	rs4276643	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	8p21.1	SCARA5	rs4276643-T	0.67	9E-28		0.029	[0.024-0.034] unit decrease	Affymetrix, Illumina [10537485] (imputed)	N
797	chr8	27803598	27803599	rs4276643	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	Factor VIII levels	25,897 European ancestry individuals, 4,500 African American individuals, 773 Asian ancestry individuals, 1,440 Hispanic individuals	NA	8p21.1	SCARA5	rs4276643-T	0.66	1E-19		0.023	NR unit decrease	Affymetrix, Illumina [13887196] (imputed)	N
797	chr8	27803598	27803599	rs4276643	26486471	van Loon J	2015-10-21	Eur J Hum Genet	Genome-wide association studies identify genetic loci for low von Willebrand factor levels.	Low vWF levels	up to 1,635 European ancestry individuals with low vWF levels, up to 33,286 European ancestry individuals with normal vWF levels	NA	8p21.1	SCARA5	rs4276643-?	NR	3E-7				Affymetrix, Illumina [~ 2600000] (imputed)	N
797	chr8	27805383	27805384	rs2685422	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SCARA5	5,361 Icelandic ancestry individuals	NA	8p21.1		rs2685422-A	0.3205	3E-37		0.252575	[0.21-0.29] unit decrease	Illumina [7506463] (imputed)	N
797	chr8	27805782	27805783	rs2726951	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PRELP	5,365 Icelandic ancestry individuals	NA	8p21.1		rs2726951-T	0.2916	1E-32		0.243909	[0.2-0.28] unit increase	Illumina [7506463] (imputed)	N
797	chr8	27805782	27805783	rs2726951	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FAM163A	5,363 Icelandic ancestry individuals	NA	8p21.1		rs2726951-T	0.2916	2E-39		0.264372	[0.22-0.3] unit increase	Illumina [7506463] (imputed)	N
797	chr8	27805782	27805783	rs2726951	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CETP	5,363 Icelandic ancestry individuals	NA	8p21.1		rs2726951-T	0.2916	2E-41		0.275856	[0.24-0.32] unit increase	Illumina [7506463] (imputed)	N
797	chr8	27805814	27805815	rs7816579	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	Factor VIII levels	25,897 European ancestry individuals, 4,500 African American individuals, 773 Asian ancestry individuals, 1,440 Hispanic individuals	NA	8p21.1	SCARA5	rs7816579-A	0.35	7E-21		0.0236	[0.019-0.029] unit increase	Affymetrix, Illumina [13887196] (imputed)	N
797	chr8	27805814	27805815	rs7816579	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	Factor VIII levels	25,897 European ancestry individuals, 4,500 African American individuals, 773 Asian ancestry individuals, 1,440 Hispanic individuals	NA	8p21.1	SCARA5	rs7816579-A	0.32	5E-16	(EA)	0.023	[0.018-0.028] unit increase	Affymetrix, Illumina [13887196] (imputed)	N
797	chr8	27807433	27807434	rs2685417	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TNC	5,367 Icelandic ancestry individuals	NA	8p21.1		rs2685417-C	0.2919	4E-32		0.243092	[0.2-0.28] unit increase	Illumina [7506463] (imputed)	N
797	chr8	27807433	27807434	rs2685417	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SFTPC	5,364 Icelandic ancestry individuals	NA	8p21.1		rs2685417-C	0.2919	2E-42		0.277411	[0.24-0.32] unit increase	Illumina [7506463] (imputed)	N
797	chr8	27807433	27807434	rs2685417	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein EVA1C	5,362 Icelandic ancestry individuals	NA	8p21.1		rs2685417-C	0.2919	3E-23		0.204956	[0.16-0.25] unit increase	Illumina [7506463] (imputed)	N
797	chr8	27807930	27807931	rs35039172	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	8p21.1	SCARA5	rs35039172-T	0.721	4E-51	(Pulmonary surfactant-associated protein C, SFTPC.5738.25.3)	0.4	[0.34-0.46] unit decrease	Affymetrix [10572788] (imputed)	N
797	chr8	27808238	27808239	rs11994699	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	8p21.1	SCARA5	rs11994699-A	0.723	2E-39	(Tenascin, TNC.4155.3.2)	0.35	[0.29-0.41] unit decrease	Affymetrix [10572788] (imputed)	N
797	chr8	27808488	27808489	rs2685416	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	8p21.1	SCARA5	rs2685416-A	0.263	1E-49	(Protein FAM163A, FAM163A.6260.14.3)	0.4	[0.34-0.46] unit increase	Affymetrix [10572788] (imputed)	N
797	chr8	27808769	27808770	rs4395853	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	8p21.1	SCARA5	rs4395853-T	0.723	3E-43	(Prolargin, PRELP.5675.6.3)	0.37	[0.31-0.43] unit decrease	Affymetrix [10572788] (imputed)	N
797	chr8	27808769	27808770	rs4395853	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	8p21.1	SCARA5	rs4395853-T	0.723	2E-21	(GDP-fucose protein O-fucosyltransferase 2, POFUT2.6042.52.3)	0.26	[0.2-0.32] unit decrease	Affymetrix [10572788] (imputed)	N
797	chr8	27808993	27808994	rs10866867	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	8p21.1	SCARA5	rs10866867-G	0.722	8E-21	(Scavenger receptor class A member 5, SCARA5.10419.1.3)	0.25	[0.19-0.31] unit increase	Affymetrix [10572788] (imputed)	N
797	chr8	27809386	27809387	rs2726948	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CELA1	5,362 Icelandic ancestry individuals	NA	8p21.1		rs2726948-A	0.2961	2E-15		0.159998	[0.12-0.2] unit increase	Illumina [7506463] (imputed)	N
797	chr8	27810625	27810626	rs939715	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	8p21.1	SCARA5	rs939715-T	0.72	8E-39	(Protein eva-1 homolog C, EVA1C.7008.13.3)	0.35	[0.29-0.41] unit decrease	Affymetrix [10572788] (imputed)	N
797	chr8	27815480	27815481	rs62496810	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	8p21.1	SCARA5	rs62496810-?	NR	5E-8				Affymetrix, Illumina [10537485] (imputed)	N
797	chr8	27815480	27815481	rs62496810	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	8p21.1	SCARA5	rs62496810-?	NR	4E-8	(EA)			Affymetrix, Illumina [10537485] (imputed)	N
797	chr8	27823831	27823832	rs11780263	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	Factor VIII levels	25,897 European ancestry individuals, 4,500 African American individuals, 773 Asian ancestry individuals, 1,440 Hispanic individuals	NA	8p21.1	SCARA5	rs11780263-?	NR	3E-17	(EA)			Affymetrix, Illumina [13887196] (imputed)	N
797	chr8	27823831	27823832	rs11780263	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	Factor VIII levels	25,897 European ancestry individuals, 4,500 African American individuals, 773 Asian ancestry individuals, 1,440 Hispanic individuals	NA	8p21.1	SCARA5	rs11780263-?	NR	1E-19				Affymetrix, Illumina [13887196] (imputed)	N
797	chr8	27888993	27888994	rs117286643	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8p21.1	NR	rs117286643-A	0.0122	2E-8	(GSTM1)	5.343	NR unit increase	Illumina [1671387] (imputed)	N
797	chr8	27898451	27898452	rs12675621	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 799 African American cases, 157,769 European ancestry controls, 14,353 African American controls	NA	8p21.1	NUGGC, SCARA5	rs12675621-G	NR	2E-9		1.07	[1.04-1.09]	Affymetrix, Illumina [12923718] (imputed)	N
797	chr8	27898451	27898452	rs12675621	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 157,769 European ancestry controls	NA	8p21.1	NR	rs12675621-?	NR	8E-9		0.063	[0.042-0.084] unit decrease	Affymetrix, Illumina [12923718] (imputed)	N
797	chr8	27905887	27905888	rs6983473	23247143	Yu B	2012-12-16	Circ Cardiovasc Genet	Association of genome-wide variation with highly sensitive cardiac troponin-T levels in European Americans and Blacks: a meta-analysis from atherosclerosis risk in communities and cardiovascular health studies.	Cardiac Troponin-T levels	9,491 European ancestry individuals, up to 2,053 African American individuals	NA	8p21.1	C8orf80	rs6983473-A	NR	4E-6	(Continuous Variable)	0.04	[0.02-0.06] ug/L decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
797	chr8	27916180	27916181	rs146167206	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Monocyte chemoattractant protein-3 levels	843 Finnish ancestry individuals	NA	8p21.1	NR	rs146167206-C		1E-6		0.7464	[0.45-1.05] SD units decrease	NR [10700000] (imputed)	N
798	chr8	27923387	27923388	rs4732812	20877300	Perroud N	2010-09-28	Pharmacogenomics J	Genome-wide association study of increasing suicidal ideation during antidepressant treatment in the GENDEP project.	Suicidal ideation	706 European ancestry individuals	NA	8p21.1	intergenic	rs4732812-?	0.73	3E-6	(Escitalopram)	2.56	[NR]	Illumina [539199]	N
798	chr8	27930876	27930877	rs12335348	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	8p21.1	NUGGC, ELP3	rs12335348-?		1E-6	(additive)	0.13	[0.077-0.183] unit decrease	Illumina [1492601] (imputed)	N
798	chr8	27933450	27933451	rs116501061	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	8p21.1	NR	rs116501061-?	NR	9E-8		1.0041	[0.65-1.36] unit decrease	Illumina [at least 560000] (imputed)	N
798	chr8	27985863	27985864	rs142583374	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	8p21.1	NR	rs142583374-?	NR	1E-10				Affymetrix [~ 8270000] (imputed)	N
798	chr8	28021768	28021769	rs1982441	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	8p21.1		rs1982441-?	NR	3E-10				NR [~ 8900000] (imputed)	N
798	chr8	28021768	28021769	rs1982441	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	8p21.1	NA	rs1982441-T	0.1322	2E-11		0.017	[0.012-0.022] unit increase	NR [~ 27400000] (imputed)	N
798	chr8	28022670	28022671	rs117538245	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Monocyte chemoattractant protein-3 levels	843 Finnish ancestry individuals	NA	8p21.1	NR	rs117538245-C		6E-6		0.7044	[0.4-1.01] SD units decrease	NR [10700000] (imputed)	N
798	chr8	28029017	28029018	rs351758	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls	NA	8p21.1	ELP3	rs351758-?	NR	4E-6		1.11	[1.06-1.16]	Illumina [at least 5000000] (imputed)	N
798	chr8	28043672	28043673	rs4266606	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		8p21.1	ELP3	rs4266606-C	0.142631	4E-8		0.0108637	[0.007-0.0147] unit increase	Affymetrix [12370749]	N
799	chr8	28061822	28061823	rs62500888	33045005	Vogelezang S	2020-10-12	PLoS Genet	Novel loci for childhood body mass index and shared heritability with adult cardiometabolic traits.	Childhood body mass index	39,620 European ancestry individuals	NA	8p21.1	ELP3	rs62500888-A	0.57	7E-10		0.047	[0.031-0.063] unit increase	Affymetrix, Illumina [8227808] (imputed)	N
799	chr8	28061973	28061974	rs13253111	26604143	Felix JF	2015-11-24	Hum Mol Genet	Genome-wide association analysis identifies three new susceptibility loci for childhood body mass index.	Childhood body mass index	34,744 European ancestry children	11,313 European ancestry children	8p21.1	ELP3	rs13253111-A	0.57	5E-9		0.042	[0.028-0.056] unit increase	Affymetrix, Illumina [2499691] (imputed)	N
799	chr8	28067892	28067893	rs34157435	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	8p21.1		rs34157435-C	NR	5E-11		0.0108	[0.0077-0.0139] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
799	chr8	28091481	28091482	rs7012648	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	8p21.1	ELP3	rs7012648-G	0.414981	8E-12		0.00973962	[0.0069-0.0125] unit decrease	Affymetrix [12370749]	N
799	chr8	28095938	28095939	rs11994255	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	8p21.1	NR	rs11994255-C	0.7191	2E-8		0.0239	[0.015-0.032] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
799	chr8	28124948	28124949	rs7813624	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	8p21.1	NR	rs7813624-?	NR	7E-35				Affymetrix [NR]	N
799	chr8	28140102	28140103	rs12156392	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	8p21.1	ELP3, PNOC	rs12156392-A	0.41	4E-8		0.015	[0.0091-0.0209] unit increase	Illumina [6108953] (imputed)	N
799	chr8	28143258	28143259	rs7009996	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	8p21.1		rs7009996-A	NR	2E-11		0.0133	[0.0094-0.0172] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
800	chr8	28181754	28181755	rs11779594	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	8p21.1	NR	rs11779594-C	0.930937853767276	9E-6	(IGP69)	0.2652	[0.15-0.38] unit increase	Illumina [~ 2500000] (imputed)	N
800	chr8	28191305	28191306	rs351776	33568662	Dashti HS	2021-02-10	Nat Commun	Genetic determinants of daytime napping and effects on cardiometabolic health.	Daytime nap	452,633 European ancestry individuals	541,333 European ancestry individuals	8p21.1	PNOC	rs351776-C		2E-12		0.006	[0.0042-0.0078] unit increase	Affymetrix [13304133] (imputed)	N
800	chr8	28204263	28204264	rs351779	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8p21.1	PNOC	rs351779-?	NR	6E-6	(niacinamide)	0.14932947	[0.085-0.214] unit increase	Affymetrix [at least 2500000] (imputed)	N
801	chr8	28325410	28325411	rs6992329	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	8p21.1		rs6992329-A	0.31	5E-18		8.66	z score increase	Affymetrix [9061022] (imputed)	N
801	chr8	28325410	28325411	rs6992329	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	8p21.1	NR	rs6992329-A	0.3143	9E-12				NR [9056863] (imputed)	N
801	chr8	28341109	28341110	rs11787273	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-16 levels	3,483 Finnish ancestry individuals	NA	8p21.1	NR	rs11787273-C		6E-6		0.1243	[0.071-0.178] SD units increase	NR [10700000] (imputed)	N
801	chr8	28354853	28354854	rs76740710	31830031	Chernus JM	2019-12-12	PLoS Genet	A candidate gene analysis and GWAS for genes associated with maternal nondisjunction of chromosome 21.	Maternal nondisjunction of chromosome 21 (mothers vs fathers)	705 mothers, 645 fathers	NA	8p21.1	NR	rs76740710-?		7E-6		2.48	[NR]	Illumina [NR] (imputed)	N
801	chr8	28354853	28354854	rs76740710	31830031	Chernus JM	2019-12-12	PLoS Genet	A candidate gene analysis and GWAS for genes associated with maternal nondisjunction of chromosome 21.	Maternal nondisjunction of chromosome 21 (MII error vs fathers)	157 mothers, 645 fathers	NA	8p21.1	NR	rs76740710-?		4E-6		3.45	[NR]	Illumina [NR] (imputed)	N
801	chr8	28362458	28362459	rs7842884	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	8p21.1		rs7842884-C	0.4	5E-11		6.56	z score increase	Affymetrix [9061022] (imputed)	N
801	chr8	28414582	28414583	rs117746305	31830031	Chernus JM	2019-12-12	PLoS Genet	A candidate gene analysis and GWAS for genes associated with maternal nondisjunction of chromosome 21.	Maternal nondisjunction of chromosome 21 (mothers vs fathers)	705 mothers, 645 fathers	NA	8p21.1	NR	rs117746305-?		5E-6		2.53	[NR]	Illumina [NR] (imputed)	N
801	chr8	28414582	28414583	rs117746305	31830031	Chernus JM	2019-12-12	PLoS Genet	A candidate gene analysis and GWAS for genes associated with maternal nondisjunction of chromosome 21.	Maternal nondisjunction of chromosome 21 (MII error vs fathers)	157 mothers, 645 fathers	NA	8p21.1	NR	rs117746305-?		4E-6		3.45	[NR]	Illumina [NR] (imputed)	N
802	chr8	28451226	28451227	rs12676854	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	8p21.1		rs12676854-T	0.26	4E-11		6.62	z score increase	Affymetrix [9061022] (imputed)	N
802	chr8	28462134	28462135	rs149738638	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-17 levels	7,760 Finnish ancestry individuals	NA	8p21.1	NR	rs149738638-C		7E-6		0.1516	[0.085-0.218] SD units increase	NR [10700000] (imputed)	N
802	chr8	28521860	28521861	rs73564758	32733355	Ryu HS	2020-07-07	Front Neurol	Genomic Analysis Identifies New Loci Associated With Motor Complications in Parkinson's Disease.	Levodopa-induced dyskinesia in levodopa treated Parkinson's disease	172 Korean ancestry cases, 569 Korean ancestry controls	NA	8p21.1	EXTL3	rs73564758-G	0.05	9E-6		4.58	[2.20-9.52]	Affymetrix [583535] (imputed)	N
802	chr8	28543624	28543625	rs181292	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	8p21.1	NR	rs181292-?		4E-8	(Superior fronto-occipital fasciculus)			NR [8955960] (imputed)	N
803	chr8	28587242	28587243	rs6983372	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	8p21.1		rs6983372-T	NR	9E-10		0.0088	[0.0061-0.0115] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
803	chr8	28592567	28592568	rs2283102	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	8p21.1		rs2283102-?	NR	1E-9				NR [~ 8900000] (imputed)	N
803	chr8	28604790	28604791	rs10448080	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	8p21.1	EXTL3	rs10448080-T	0.68	2E-8		0.023	[0.0093-0.0367] unit increase	Affymetrix, Illumina [2704730] (imputed)	N
803	chr8	28611158	28611159	rs137916491	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	8p21.1		rs137916491-C	0.007636	2E-8		0.0681661	[0.045-0.092] unit decrease	Illumina [13479295] (imputed)	N
803	chr8	28614447	28614448	rs62504329	31194736	Tiensuu H	2019-06-13	PLoS Genet	Risk of spontaneous preterm birth and fetal growth associates with fetal SLIT2.	Moderate-to-late spontaneous preterm birth	75 Finnish ancestry infant cases, 419 Finnish ancestry infant controls	NA	8p21.1	EXTL3, TNTS9	rs62504329-?	NR	4E-6		2.564103		Illumina [6778521] (imputed)	N
803	chr8	28626417	28626418	rs241178	30498476	Liu H	2018-11-15	Front Endocrinol (Lausanne)	Heritability and Genome-Wide Association Study of Plasma Cholesterol in Chinese Adult Twins.	High density lipoprotein cholesterol levels	139 Chinese ancestry dizygotic twin pairs	NA	8p21.1	INTS9	rs241178-?		3E-6				Illumina [7405822] (imputed)	N
803	chr8	28680768	28680769	rs34807077	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	8p21.1		rs34807077-A	0.1569	3E-11		0.0128	[0.0091-0.0165] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
803	chr8	28680768	28680769	rs34807077	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	8p21.1	Intergenic	rs34807077-A	0.1569	5E-10	(MTAG)	0.0112	[0.0077-0.0147] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
803	chr8	28683299	28683300	rs35927132	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	8p21.1		rs35927132-T	0.1604	3E-6		31.251501	z score increase	NR [6814003]	N
803	chr8	28683299	28683300	rs35927132	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	8p21.1		rs35927132-T	0.157	4E-11	(conditional-joint)	0.0127	[0.009-0.0164] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
804	chr8	28734085	28734086	rs35099409	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder in trauma exposed individuals	13,393 European ancestry cases, 10,701 European ancestry controls		8p21.1	NR	rs35099409-T	0.9511414	5E-6		1.1248593	[1.07-1.18]	Affymetrix [7791636] (imputed)	N
804	chr8	28791158	28791159	rs2221894	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	8p21.1	HMBOX1	rs2221894-G	0.228	6E-6	(Free T3 )	0.02	[NR] pg/mL increase	Illumina [899892]	N
805	chr8	28901691	28901692	rs77400396	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	8p12	NR	rs77400396-A	NR	7E-10		0.0448	[0.03-0.059] unit decrease	Affymetrix [9000000] (imputed)	N
805	chr8	28901691	28901692	rs77400396	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	8p12	NR	rs77400396-A	NR	5E-11		0.0478	[0.033-0.062] unit decrease	Affymetrix [9000000] (imputed)	N
805	chr8	28901691	28901692	rs77400396	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	8p12	NR	rs77400396-A	NR	4E-9		0.0429	[0.029-0.057] unit decrease	Affymetrix [9000000] (imputed)	N
805	chr8	28954891	28954892	rs7844537	23934736	Yu B	2013-08-11	Genet Epidemiol	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels  (X-11787)	1,260 African American individuals	NA	8p12	KIF13B	rs7844537-G		6E-6		0.05	[0.03-0.07] unit decrease	Affymetrix [~ 2500000] (imputed)	N
806	chr8	28995021	28995022	rs13251954	23319000	Luykx JJ	2013-01-15	Mol Psychiatry	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA-5-HIAA Factor score)	up to 398 European ancestry individuals	NA	8p12	KIF13B, AF086219	rs13251954-A		2E-6		0.2357	unit decrease	Illumina [5767231] (imputed)	N
806	chr8	29024942	29024943	rs117139027	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	8p12		rs117139027-A	NR	2E-10		0.0565	[0.039-0.074] unit decrease	Affymetrix, Illumina [20536134] (imputed)	N
806	chr8	29024942	29024943	rs117139027	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	8p12		rs117139027-A	NR	4E-11		0.0598	[0.042-0.077] unit decrease	Affymetrix, Illumina [20521447] (imputed)	N
806	chr8	29024942	29024943	rs117139027	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	8p12	KIF13B	rs117139027-G	0.982406	7E-13		0.0569281	[0.041-0.072] unit increase	Affymetrix [NR] (imputed)	N
806	chr8	29024942	29024943	rs117139027	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	8p12	KIF13B	rs117139027-G	0.982378	6E-13		0.0569668	[0.041-0.072] unit increase	Affymetrix [NR] (imputed)	N
806	chr8	29024942	29024943	rs117139027	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	8p12	KIF13B	rs117139027-?	NR	4E-15		0.077	[0.06-0.094] unit decrease	Affymetrix [5701386] (imputed)	N
806	chr8	29082284	29082285	rs75609241	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	8p12	KIF13B	rs75609241-?	NR	5E-7				Affymetrix [5486770] (imputed)	N
807	chr8	29106058	29106059	rs2954793	23319000	Luykx JJ	2013-01-15	Mol Psychiatry	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA)	up to 398 European ancestry individuals	NA	8p12	KIF13B	rs2954793-T	NR	3E-6		0.2305	unit increase	Illumina [5767231] (imputed)	N
807	chr8	29153378	29153379	rs117245893	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	8p12	NR	rs117245893-G	NR	1E-12		0.0619	[0.045-0.079] unit decrease	Affymetrix [9000000] (imputed)	N
807	chr8	29153378	29153379	rs117245893	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	8p12	NR	rs117245893-G	NR	1E-13		0.0643	[0.047-0.081] unit decrease	Affymetrix [9000000] (imputed)	N
807	chr8	29153378	29153379	rs117245893	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	8p12	NR	rs117245893-G	NR	2E-12		0.0616	[0.045-0.079] unit decrease	Affymetrix [9000000] (imputed)	N
807	chr8	29153776	29153777	rs643472	26077951	Kouri N	2015-06-16	Nat Commun	Genome-wide association study of corticobasal degeneration identifies risk variants shared with progressive supranuclear palsy.	Corticobasal degeneration	152 cases, 3,111 controls	67 cases, 457 controls	8p12	lnc-KIF13B-1	rs643472-?	NR	3E-8		1.82	[NR]	Illumina [533898] (imputed)	N
807	chr8	29153776	29153777	rs643472	26077951	Kouri N	2015-06-16	Nat Commun	Genome-wide association study of corticobasal degeneration identifies risk variants shared with progressive supranuclear palsy.	Corticobasal degeneration	152 cases, 1,986 controls	NA	8p12	LNC-KIF13B-1	rs643472-?	NR	1E-6		1.83	[1.43 - 2.34]	Illumina [533898] (imputed)	N
807	chr8	29185968	29185969	rs4732926	30678657	Westphal S	2019-01-24	BMC Cardiovasc Disord	Genome-wide association study of myocardial infarction, atrial fibrillation, acute stroke, acute kidney injury and delirium after cardiac surgery - a sub-analysis of the RIPHeart-Study.	Postoperative complication after cardiac surgery	Up to 1,163 individuals	NA	8p12	DUSP4	rs4732926-?	NR	6E-6				Illumina [9007469] (imputed)	N
807	chr8	29202222	29202223	rs569209	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	8p12		rs569209-?	NR	3E-8				NR [~ 8900000] (imputed)	N
807	chr8	29213586	29213586	rs557046152	33293427	Emami NC	2020-12-08	Cancer Res	A large-scale association study detects novel rare variants, risk genes, functional elements, and polygenic architecture of prostate cancer susceptibility.	Prostate cancer	14,113 European ancestry cases, 194,140 European ancestry controls	NA	8p12	DUSP4, KIF13B	rs557046152-G	NR	5E-9		1.79	1.47-2.17	Affymetrix [at least 232408] (imputed)	N
807	chr8	29228635	29228636	rs11787332	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8p12	NR	rs11787332-G	0.04007	7E-9	(PLD3)	0.01414	NR unit increase	Illumina [1671387] (imputed)	N
808	chr8	29344461	29344462	rs12548021	23350875	Fernandez-Rozadilla C	2013-01-26	BMC Genomics	A colorectal cancer genome-wide association study in a Spanish cohort identifies two variants associated with colorectal cancer risk at 1p33 and 8p12.	Colorectal cancer	882 European ancestry cases, 473 European ancestry controls	1,436 European ancestry cases, 1,780 European ancestry controls	8p12	NR	rs12548021-?	NR	3E-6		1.28	[1.155-1.418]	Affymetrix [674718]	N
809	chr8	29360304	29360305	rs10091038	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p12		rs10091038-A	NR	6E-8		0.019	unit increase	Affymetrix [at least 7091467] (imputed)	N
809	chr8	29360304	29360305	rs10091038	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p12		rs10091038-A	0.443	1E-6	(EA)	0.018	unit increase	Affymetrix [at least 7091467] (imputed)	N
809	chr8	29360304	29360305	rs10091038	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	265,204 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8p12	NR	rs10091038-A	NR	2E-8		0.016	unit increase	Affymetrix [at least 7091467] (imputed)	N
809	chr8	29360304	29360305	rs10091038	20339536	Barber MJ	2010-03-22	PLoS One	Genome-wide association of lipid-lowering response to statins in combined study populations.	Response to statin therapy	3,928 European ancestry individuals	NA	8p12	LOC646909, DUSP4, KIF13B	rs10091038-A	0.43	3E-8	(HDL, sum)			Illumina [~ 2500000] (imputed)	N
809	chr8	29375188	29375189	rs17060290	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	8p12		rs17060290-?	NR	1E-9				NR [~ 8900000] (imputed)	N
809	chr8	29394780	29394781	rs7822830	34586716	Chen J	2021-09-29	Mol Genet Genomic Med	Heritability and genome-wide association study of blood pressure in Chinese adult twins.	Mean arterial pressure	137 Chinese ancestry twins	NA	8p12		rs7822830-?	NR	1E-6				Illumina [7401356] (imputed)	N
809	chr8	29451798	29451799	rs573069529	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8p12	NR	rs573069529-A	0.01742	9E-9	(BPNT1)	0.03186	NR unit increase	Illumina [1671387] (imputed)	N
809	chr8	29472346	29472347	rs56283082	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Breast cancer	17,881 European ancestry cases, 410,350 European ancestry controls	NA	8p12		rs56283082-A	NR	2E-7		1.06929	NR	Affymetrix [7846216] (imputed)	N
810	chr8	29509615	29509616	rs9693444	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	8p12		rs9693444-A	NR	8E-26		1.07	[1.05-1.08]	Affymetrix, Illumina [NR] (imputed)	N
810	chr8	29509615	29509616	rs9693444	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	8p12	intergenic	rs9693444-A	0.32	2E-21	(EA)	1.06	[1.04-1.08] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
810	chr8	29509615	29509616	rs9693444	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	46,785 European ancestry cases, 42,892 European ancestry controls	NA	8p12	NR	rs9693444-A	0.32	1E-10		1.07	[1.05-1.09]	Affymetrix, Illumina [~ 14000000] (imputed)	N
810	chr8	29509615	29509616	rs9693444	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	15,748 European ancestry cases, 18,084 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls	8p12	NR	rs9693444-A	0.32	1E-12		1.07	[1.05-1.09]	Affymetrix, Illumina [~ 11600000] (imputed)	N
810	chr8	29509615	29509616	rs9693444	23535729	Michailidou K	2013-04-01	Nat Genet	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	8p12	intergenic	rs9693444-A	0.32	9E-14		1.07	[1.05-1.09]	Affymetrix, Illumina [~ 2600000] (imputed)	N
810	chr8	29523122	29523123	rs6558136	33037222	Sieh W	2020-10-09	Nat Commun	Identification of 31 loci for mammographic density phenotypes and their associations with breast cancer risk.	Percent mammographic density	24,192 European ancestry individuals	NA	8p12		rs6558136-?	NR	1E-8		0.042	[0.026-0.058] unit decrease	Affymetrix [9906178] (imputed)	N
810	chr8	29523122	29523123	rs6558136	33037222	Sieh W	2020-10-09	Nat Commun	Identification of 31 loci for mammographic density phenotypes and their associations with breast cancer risk.	Mammographic density (dense area)	24,192 European ancestry individuals	NA	8p12		rs6558136-?	NR	4E-7		0.046	[0.028-0.064] unit decrease	Affymetrix [9906178] (imputed)	N
810	chr8	29535165	29535166	rs7463814	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	8p12	NR	rs7463814-?	NR	3E-10				Affymetrix [~ 8270000] (imputed)	N
810	chr8	29536210	29536211	rs4732990	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8p12	LINC00589	rs4732990-T	NR	1E-9		0.0259043	[0.018-0.034] unit decrease	Affymetrix [321114] (imputed)	N
810	chr8	29536210	29536211	rs4732990	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	8p12	LINC00589	rs4732990-T	NR	8E-9		0.0245154	[0.016-0.033] unit decrease	Affymetrix [321169] (imputed)	N
811	chr8	29642080	29642081	rs6558158	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	8p12		rs6558158-?	NR	2E-9				NR [~ 8900000] (imputed)	N
811	chr8	29648853	29648854	rs9693533	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	8p12	NR	rs9693533-A	0.438669	7E-18		0.0268468	[0.021-0.033] unit decrease	NR [19129689] (imputed)	N
811	chr8	29669768	29669769	rs149014416	28598419	Hong X	2017-06-09	Nat Commun	Genome-wide approach identifies a novel gene-maternal pre-pregnancy BMI interaction on preterm birth.	Spontaneous preterm birth (maternal effect)	461 African American spontaneous preterm birth mothers, 1,035 African American term birth mothers	NA	8p12	LOC101929470, DUSP4	rs149014416-A	0.03	2E-8		2.4	1.7-3.5	Illumina [13317377] (imputed)	N
811	chr8	29669768	29669769	rs149014416	28598419	Hong X	2017-06-09	Nat Commun	Genome-wide approach identifies a novel gene-maternal pre-pregnancy BMI interaction on preterm birth.	Gestational age at birth (maternal effect)	698 African American preterm birth mothers, 1,035 African American term birth mothers	NA	8p12	DUSP4, LOC101929470	rs149014416-A	0.03	2E-6		0.42	[0.24-0.60] unit decrease	Illumina [13317377] (imputed)	N
811	chr8	29716260	29716261	rs16876083	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	8p12	LOC646909, MAP2K1P1	rs16876083-A	0.005	2E-6		8.65	[2.96-25.28]	Illumina [1556551]	N
811	chr8	29743360	29743361	rs7013957	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	8p12	NR	rs7013957-C	0.22	3E-7		0.9	[0.86-0.94]	Illumina [8468885] (imputed)	N
812	chr8	29852711	29852712	rs2595041	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	8p12		rs2595041-?	NR	9E-11				NR [~ 8900000] (imputed)	N
812	chr8	29852711	29852712	rs2595041	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	8p12	NR	rs2595041-C	0.355596	1E-8		0.0182324	[0.012-0.025] unit increase	NR [19129689] (imputed)	N
812	chr8	29872896	29872897	rs142416499	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8p12	NR	rs142416499-T	0.01045	4E-9	(NNT)	0.5153	NR unit increase	Illumina [1671387] (imputed)	N
813	chr8	29919219	29919220	rs112232869	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 43)	19,670 European ancestry individuals	NA	8p12		rs112232869-?	NR	3E-8				NR [9705931] (imputed)	N
813	chr8	29966703	29966704	rs7357468	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	8p12		rs7357468-?	NR	5E-8				NR [~ 8900000] (imputed)	N
813	chr8	29982517	29982518	rs12681963	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NA	8p12	intergenic	rs12681963-T	0.14	2E-7		1.11	[1.06-1.15]	Affymetrix, Illumina [~ 2300000] (imputed)	N
814	chr8	30131483	30131484	rs2958754	34214102	Sarnowski C	2021-07-02	PLoS One	Identification of novel and rare variants associated with handgrip strength using whole genome sequence data from the NHLBI Trans-Omics in Precision Medicine (TOPMed) Program.	Hand grip strength	8674 European ancestry, African American or Afro-Caribbean, Hispanic or Latin American, Asian ancestry, Native American ancestry, Other ancestry women	NA	8p12		rs2958754-A	0.026	1E-8		1.63	kg decrease	NR [638486]	N
814	chr8	30131483	30131484	rs2958754	34214102	Sarnowski C	2021-07-02	PLoS One	Identification of novel and rare variants associated with handgrip strength using whole genome sequence data from the NHLBI Trans-Omics in Precision Medicine (TOPMed) Program.	Hand grip strength	2158 African American or Afro-Caribbean women	NA	8p12		rs2958754-A	0.101	2E-6		1.55	kg decrease	NR [638486]	N
815	chr8	30175380	30175381	rs12674731	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Uterine fibroids	21,024 European ancestry cases, 237,694 European ancestry controls, 14,475 East Asian ancestry cases, 65,733 East Asian ancestry controls	NA	8p12		rs12674731-C	NR	1E-9		0.0574	[0.039-0.076] unit increase	Affymetrix, Illumina [25795146] (imputed)	N
815	chr8	30175380	30175381	rs12674731	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Uterine fibroids	14,475 East Asian ancestry cases, 65,733 East Asian ancestry controls	NA	8p12		rs12674731-C	0.423465398	1E-9		0.08381388	[0.057-0.111] unit increase	Illumina [13401454] (imputed)	N
815	chr8	30175380	30175381	rs12674731	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	8p12		rs12674731-C	NR	4E-13		0.0165	[0.012-0.021] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
815	chr8	30175380	30175381	rs12674731	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	8p12	DCTN6, RBPMS	rs12674731-A	0.77	5E-13		7.24	z-score increase	Affymetrix [4311822] (imputed)	N
815	chr8	30182928	30182929	rs62501971	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	8p12	RBPMS-AS1	rs62501971-A	0.788631	2E-15		0.00221582	[0.0017-0.0028] unit increase	Affymetrix [13995440] (imputed)	N
815	chr8	30220817	30220818	rs6985194	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	8p12		rs6985194-G	NR	2E-9		0.0186	[0.013-0.025] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
815	chr8	30221350	30221351	rs7000773	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8p12	NR	rs7000773-A	0.210192	7E-12				Affymetrix, Illumina [23472807] (imputed)	N
815	chr8	30229583	30229584	rs7834448	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	8p12	NR	rs7834448-C	0.667	7E-6	(EA)	0.0309	[0.017-0.044] unit decrease	Illumina [~ 11800000] (imputed)	N
815	chr8	30240548	30240549	rs12677454	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	8p12	RBPMS-AS1	rs12677454-A	0.47053	2E-9		0.013486328	[0.0091-0.0179] unit decrease	Affymetrix [93095623] (imputed)	N
815	chr8	30241617	30241618	rs113198678	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Breast size	33,790 European ancestry individuals	NA	8p12	DCTN6, RBPMS	rs113198678-?	NR	1E-6		0.12	[0.169-0.072] unit decrease	Illumina [12039487] (imputed)	N
815	chr8	30242075	30242076	rs113142693	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	8p12	NR	rs113142693-C	0.247465	1E-14		0.017087	[0.013-0.021] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
815	chr8	30262785	30262786	rs2979481	22174390	Rankinen T	2011-12-15	J Appl Physiol (1985)	Heritability of submaximal exercise heart rate response to exercise training is accounted for by nine SNPs.	Heart rate variability traits	472 European ancestry individuals from 99 families	NA	8p12	RBPMS	rs2979481-?	NR	4E-6				Illumina [320000]	N
815	chr8	30272309	30272310	rs2915617	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	154,355 East Asian ancestry individuals	NA	8p12		rs2915617-G	0.860961	3E-12		0.0353718	[0.025-0.045] unit increase	Illumina [13479091] (imputed)	N
815	chr8	30272309	30272310	rs2915617	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	8p12		rs2915617-G	0.861333	9E-11		0.032115	[0.022-0.042] unit increase	Illumina [13478928] (imputed)	N
815	chr8	30272309	30272310	rs2915617	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	82,810 East Asian ancestry individuals	NA	8p12		rs2915617-G	0.860061	2E-9		0.0415787	[0.028-0.055] unit increase	Illumina [13467171] (imputed)	N
816	chr8	30279354	30279355	rs6468341	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	8p12		rs6468341-C	NR	1E-18		0.0207	[0.016-0.025] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
816	chr8	30279354	30279355	rs6468341	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	8p12		rs6468341-C	NR	2E-14		0.0194	[0.015-0.024] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
816	chr8	30279354	30279355	rs6468341	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	8p12		rs6468341-C	NR	2E-30		0.0279	[0.023-0.033] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
816	chr8	30279354	30279355	rs6468341	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	8p12	RBPMS	rs6468341-C	0.742038	2E-9		0.015114331	[0.01-0.02] unit increase	Affymetrix [93095623] (imputed)	N
816	chr8	30279354	30279355	rs6468341	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	8p12	NR	rs6468341-C	0.742846	7E-18		0.018973	[0.015-0.023] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
816	chr8	30279354	30279355	rs6468341	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	8p12		rs6468341-?	NR	2E-9				NR [~ 8900000] (imputed)	N
816	chr8	30279452	30279453	rs6468342	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8p12	NR	rs6468342-G	0.770098	1E-22				Affymetrix, Illumina [24588908] (imputed)	N
816	chr8	30279452	30279453	rs6468342	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8p12	NR	rs6468342-G	0.761896	6E-14				Affymetrix, Illumina [23467995] (imputed)	N
816	chr8	30279452	30279453	rs6468342	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8p12	NR	rs6468342-G	0.766819	1E-57				Affymetrix, Illumina [24246363] (imputed)	N
816	chr8	30279452	30279453	rs6468342	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8p12	NR	rs6468342-G	0.767383	1E-53				Affymetrix, Illumina [20825802] (imputed)	N
816	chr8	30279452	30279453	rs6468342	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	8p12	NR	rs6468342-G	0.741479	3E-49		0.032449	[0.028-0.037] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
816	chr8	30279470	30279477	rs35091702	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	8p12		rs35091702-C	NR	3E-11		0.0188	[0.013-0.024] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
816	chr8	30279470	30279477	rs35091702	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	8p12	RBPMS	rs35091702-C	0.742661	3E-12		0.017628916	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
816	chr8	30279470	30279477	rs35091702	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	8p12	RBPMS	rs35091702-C	0.742653	3E-16		0.020701893	[0.016-0.026] unit increase	Affymetrix [93095623] (imputed)	N
816	chr8	30279470	30279477	rs35091702	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	8p12	RBPMS	rs35091702-C	0.742594	5E-27		0.027561221	[0.023-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
816	chr8	30279470	30279477	rs35091702	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	8p12	RBPMS	rs35091702-C	0.742563	8E-39		0.0342618	[0.03-0.039] unit decrease	Affymetrix [93095623] (imputed)	N
816	chr8	30279470	30279477	rs35091702	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	8p12	RBPMS	rs35091702-C	0.742586	3E-36		0.0318218	[0.027-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
816	chr8	30279470	30279477	rs35091702	28346444	Wright DJ	2017-03-27	Nat Genet	Genetic variants associated with mosaic Y chromosome loss highlight cell cycle genes and overlap with cancer susceptibility.	Mosaic loss of chromosome Y (Y chromosome dosage)	67,034 European ancestry men	8,715 European ancestry men, 9,793 men	8p12	RBPMS	rs35091702-C	0.74	1E-11		0.002	NR unit decrease	Affymetrix [at least 641018] (imputed)	N
816	chr8	30279470	30279477	rs35091702	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	8p12	RBPMS	rs35091702-C	0.743	1E-12		0.02880374	[0.021-0.037] unit decrease	Affymetrix [~ 2500000] (imputed)	N
816	chr8	30279470	30279477	rs35091702	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	8p12	RBPMS	rs35091702-C	0.7431	3E-12		0.0282288	[0.02-0.036] unit decrease	Affymetrix [~ 2500000] (imputed)	N
816	chr8	30279915	30279916	rs2915607	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	8p12	RBPMS	rs2915607-C	0.741811	6E-34		0.03131791	[0.026-0.036] unit increase	Affymetrix [93095623] (imputed)	N
816	chr8	30279915	30279916	rs2915607	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	8p12	RBPMS	rs2915607-C	0.7418	1E-19		0.023381477	[0.018-0.028] unit increase	Affymetrix [93095623] (imputed)	N
816	chr8	30279915	30279916	rs2915607	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8p12	NR	rs2915607-C	0.771819	7E-17				Affymetrix, Illumina [24649327] (imputed)	N
816	chr8	30279915	30279916	rs2915607	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8p12	NR	rs2915607-C	0.761459	2E-19				Affymetrix, Illumina [23114412] (imputed)	N
816	chr8	30279915	30279916	rs2915607	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	8p12		rs2915607-?	NR	2E-45				NR [~ 8900000] (imputed)	N
816	chr8	30280064	30280065	rs56411466	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	8p12	RBPMS	rs56411466-A	0.5445	6E-11		0.005	[0.0034-0.0066] unit decrease	Affymetrix, Illumina [8176554] (imputed)	N
816	chr8	30280629	30280630	rs2979488	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	8p12		rs2979488-G	0.8787	2E-10		0.0349463	[0.024-0.046] unit decrease	Illumina [13476266] (imputed)	N
816	chr8	30280629	30280630	rs2979488	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	8p12		rs2979488-?	NR	2E-11				NR [~ 8900000] (imputed)	N
816	chr8	30280832	30280833	rs2979489	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	8p12		rs2979489-A	NR	1E-29		0.0275	[0.023-0.032] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
816	chr8	30280832	30280833	rs2979489	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	8p12	NR	rs2979489-A	NR	4E-14		0.0206	[0.015-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
816	chr8	30280832	30280833	rs2979489	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	8p12	NR	rs2979489-A	NR	2E-11		0.0192	[0.014-0.025] unit increase	Affymetrix [9000000] (imputed)	N
816	chr8	30280832	30280833	rs2979489	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	8p12	NR	rs2979489-A	NR	2E-10		0.0173	[0.012-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
816	chr8	30280832	30280833	rs2979489	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	8p12	RBPMS	rs2979489-A	0.741961	1E-16		0.020842977	[0.016-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
816	chr8	30280832	30280833	rs2979489	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	8p12	RBPMS	rs2979489-A	0.741965	2E-9		0.015108491	[0.01-0.02] unit increase	Affymetrix [93095623] (imputed)	N
816	chr8	30280832	30280833	rs2979489	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular volume	up to 29,946 European ancestry individuals, up to 6150 African American individuals, 15,074 East Asian individuals.	16,389 individuals of European and African American ancestry.	8p12	RBPMS	rs2979489p-A	NR	1E-10		0.002	[0.0012-0.0028] unit decrease	NR [2500000] (imputed)	N
816	chr8	30280832	30280833	rs2979489	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular hemoglobin	up to 21,020 European ancestry individuals, up to 3,621 African American individuals, up to 15,062 East Asian individuals.	16,389 individuals of European and African American ancestry.	8p12	RBPMS	rs2979489-A	NR	5E-7		0.002	[0.0012-0.0028] unit decrease	NR [2500000] (imputed)	N
816	chr8	30280832	30280833	rs2979489	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	8p12	RBPMS	rs2979489-A	0.7425	4E-13		0.02961417	[0.022-0.038] unit increase	Affymetrix [~ 2500000] (imputed)	N
816	chr8	30280832	30280833	rs2979489	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	8p12	RBPMS	rs2979489-A	0.7425	6E-12		0.02811685	[0.02-0.036] unit increase	Affymetrix [~ 2500000] (imputed)	N
816	chr8	30280832	30280833	rs2979489	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	8p12	RBPMS	rs2979489-A	0.7422	5E-14		0.03141117	[0.023-0.04] unit increase	Affymetrix [~ 2500000] (imputed)	N
816	chr8	30280832	30280833	rs2979489	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	8p12	RBPMS	rs2979489-A	0.7425	4E-12		0.02832934	[0.02-0.036] unit increase	Affymetrix [~ 2500000] (imputed)	N
816	chr8	30280832	30280833	rs2979489	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	8p12	RBPMS	rs2979489-A	0.7425	8E-13		0.02935529	[0.021-0.037] unit increase	Affymetrix [~ 2500000] (imputed)	N
816	chr8	30280832	30280833	rs2979489	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	8p12	RBPMS	rs2979489-A	0.7425	1E-12		0.02919017	[0.021-0.037] unit increase	Affymetrix [~ 2500000] (imputed)	N
816	chr8	30285090	30285091	rs2979469	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	8p12		rs2979469-C	0.878931	3E-9		0.0329644	[0.022-0.044] unit decrease	Illumina [13476299] (imputed)	N
816	chr8	30285090	30285091	rs2979469	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	8p12	RBPMS	rs2979469-C	0.74153	3E-26		0.026813408	[0.022-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
816	chr8	30285090	30285091	rs2979469	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	8p12	NR	rs2979469-C	0.742194	4E-51		0.03132	[0.027-0.035] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
816	chr8	30285090	30285091	rs2979469	31624269	Terao C	2019-10-17	Nat Commun	GWAS of mosaic loss of chromosome Y highlights genetic effects on blood cell differentiation.	Mosaic loss of chromosome Y (Y chromosome dosage)	95,380 Japanese men	NA	8p12	RBPMS	rs2979469-C	0.88	5E-8		0.035	NR unit decrease	Illumina [9591901] (imputed)	N
816	chr8	30285090	30285091	rs2979469	31624269	Terao C	2019-10-17	Nat Commun	GWAS of mosaic loss of chromosome Y highlights genetic effects on blood cell differentiation.	Mosaic loss of chromosome Y (Y chromosome dosage)	205,011 men	NA	8p12	RBPMS	rs2979469-C	0.74	3E-30		0.015	unit increase	NR [NR]	N
816	chr8	30288271	30288272	rs2979470	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	NA	8p12	RBPMS	rs2979470-T	0.49	5E-11		0.1991	[0.14-0.26] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
816	chr8	30291703	30291704	rs2979472	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	8p12		rs2979472-C	NR	1E-9		0.0162	[0.011-0.021] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
816	chr8	30291703	30291704	rs2979472	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	8p12	RBPMS	rs2979472-C	0.7663	3E-11		0.02803282	[0.02-0.036] unit decrease	Affymetrix [~ 2500000] (imputed)	N
816	chr8	30299747	30299748	rs35320172	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	8p12		rs35320172-?	NR	5E-8				NR [~ 8900000] (imputed)	N
816	chr8	30302464	30302465	rs4545054	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	8p12	RBPMS	rs4545054-C	0.49	2E-8		0.36	[0.24-0.48] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
816	chr8	30302464	30302465	rs4545054	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	8p12	RBPMS	rs4545054-C	0.4981	8E-8		0.355	[0.23-0.48] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
816	chr8	30303387	30303388	rs10954993	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	121,047 East Asian ancestry individuals	NA	8p12	NR	rs10954993-C	0.126297	2E-11		0.041098	[0.029-0.053] SD units increase	Affymetrix, Illumina [16286195] (imputed)	N
816	chr8	30303387	30303388	rs10954993	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	119,629 East Asian ancestry individuals	NA	8p12	NR	rs10954993-C	0.126305	3E-10		0.038829	[0.027-0.051] SD units increase	Affymetrix, Illumina [16286228] (imputed)	N
816	chr8	30310334	30310335	rs13275869	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	8p12		rs13275869-?	NR	2E-20				NR [~ 8900000] (imputed)	N
816	chr8	30316951	30316952	rs16876993	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Total grey matter volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	8p12	RBPMS	rs16876993-?		9E-6				Illumina [4322238] (imputed)	N
816	chr8	30319536	30319537	rs11993146	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	8p12	RBPMS	rs11993146-A	0.2328	6E-10		0.02660209	[0.018-0.035] unit decrease	Affymetrix [~ 2500000] (imputed)	N
816	chr8	30324802	30324803	rs4292648	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	8p12		rs4292648-T	NR	4E-11		0.0084	[0.0059-0.0109] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
816	chr8	30344148	30344156	rs776153592	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	8p12		rs776153592-C	NR	5E-14		0.0169	[0.013-0.021] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
816	chr8	30344277	30344278	rs111408549	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	8p12	NR	rs111408549-?	NR	4E-6		2490.197	NR unit decrease	Illumina [2379855]	N
816	chr8	30346543	30346544	rs12548554	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	8p12		rs12548554-A	NR	2E-15		0.0191	[0.014-0.024] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
816	chr8	30355037	30355038	rs62505144	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	8p12	RBPMS	rs62505144-T	0.229856	6E-13		0.018912395	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
816	chr8	30360925	30360926	rs12541111	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	8p12		rs12541111-A	NR	7E-10		0.0157	[0.011-0.021] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
816	chr8	30383012	30383013	rs2979531	29782485	Rueger S	2018-05-21	PLoS Genet	Evaluation and application of summary statistic imputation to discover new height-associated loci.	Height	253,288 European ancestry individuals	336,474 European ancestry individuals	8p12	NR	rs2979531-G	0.485056863263686	1E-7				NR [9276018] (imputed)	N
816	chr8	30401366	30401367	rs2915594	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular volume	108,256 Japanese ancestry individuals	NA	8p12	RBPMS	rs2915594-?	NR	3E-8		0.03483	[0.023-0.047] unit increase novel	Illumina [6108953] (imputed)	N
816	chr8	30407388	30407389	rs184561571	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Creatinine levels	110,051 European ancestry individuals	NA	8p12		rs184561571-G	0.934496	4E-9		0.0420927	[0.028-0.056] unit increase	NR [11722792] (imputed)	N
816	chr8	30407388	30407389	rs184561571	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	8p12		rs184561571-A	NR	6E-11		0.0255	[0.018-0.033] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
817	chr8	30436851	30436852	rs10503871	23934736	Yu B	2013-08-11	Genet Epidemiol	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels  (X-11787)	1,260 African American individuals	NA	8p12	GTF2E2	rs10503871-C		3E-6		0.04	[0.02-0.05] unit decrease	Affymetrix [~ 2500000] (imputed)	N
817	chr8	30454209	30454210	rs35740987	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	23,963 European ancestry cases, 306,942 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	43,254 European ancestry cases, 1,471,118 European ancestry controls	8p12	GTF2E2	rs35740987-CA	NR	7E-10		0.0445	unit increase	Illumina [15409056] (imputed)	N
817	chr8	30469816	30469817	rs2978277	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	HDL cholesterol levels	400,754 European ancestry individuals	NA	8p12		rs2978277-?	NR	1E-8		0.0714558	[0.048-0.095] unit increase	NR [9800000] (imputed)	N
817	chr8	30469816	30469817	rs2978277	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	8p12	GTF2E2	rs2978277-C	0.00674900000000001	1E-9		0.0886981	[0.064-0.113] unit decrease	Affymetrix [93095623] (imputed)	N
817	chr8	30469816	30469817	rs2978277	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	8p12		rs2978277-?	NR	2E-8				NR [~ 8900000] (imputed)	N
817	chr8	30498858	30498859	rs2978263	20125193	Cirulli ET	2010-02-03	Eur J Hum Genet	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American individuals, up to 74 South Asian ancestry individuals	NA	8p12	GTF2E2	rs2978263-?	NR	8E-6	(Animals)			Illumina [up to 563855]	N
818	chr8	30559234	30559235	rs149176864	31095341	Kerns SL	2019-05-16	J Natl Cancer Inst	Radiogenomics Consortium Genome-Wide Association Study Meta-analysis of Late Toxicity after Prostate Cancer Radiotherapy.	Toxicity response to radiotherapy in prostate cancer (rectal bleeding) (time to event)	3,379 European ancestry individuals	NA	8p12	NR	rs149176864-?	0.02	1E-7		2.99	[1.99-4.49]	Affymetrix, Illumina [~ 6000000] (imputed)	N
818	chr8	30658209	30658210	rs191543067	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		PPP2CB	rs191543067-?	NR	1E-9	(female)	0.52306	[NR] unit increase	Affymetrix [NR] (imputed)	N
819	chr8	30756869	30756870	rs116898861	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	8p12		rs116898861-T	NR	1E-13		0.0865	[0.064-0.109] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
819	chr8	30756869	30756870	rs116898861	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	8p12	NR	rs116898861-T	0.0112139999999999	4E-9		0.06412309	[0.043-0.085] unit increase	Affymetrix [93095623] (imputed)	N
819	chr8	30756869	30756870	rs116898861	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	8p12		rs116898861-?	NR	4E-13				NR [~ 8900000] (imputed)	N
820	chr8	30820167	30820168	rs17647894	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	8p12	RP11-293D9.2	rs17647894-A	0.43	5E-8		0.011159483	[0.0072-0.0152] unit increase	Affymetrix [up to 18485882] (imputed)	N
820	chr8	30822093	30822094	rs6985028	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	8p12		rs6985028-A	NR	3E-8		0.0408	[0.026-0.055] unit decrease	Affymetrix, Illumina [25845091] (imputed)	N
820	chr8	30838545	30838546	rs11783562	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Longevity	up to 482,000 European ancestry individuals	NA	8p12	NR	rs11783562-C	NR	8E-9		0.01177	[0.0078-0.0158] unit increase	Illumina [~ 540852]	N
820	chr8	30841521	30841522	rs2344121	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	8p12	NA	rs2344121-A	0.5337	1E-8	(Female)	1.044	[1.03-1.06]	Affymetrix, Illumina [NR] (imputed)	N
820	chr8	30846882	30846883	rs2543607	28115739	Smith AH	2017-01-24	Mol Psychiatry	Genome-wide association study of therapeutic opioid dosing identifies a novel locus upstream of OPRM1.	Methadone dose in opioid dependence	1,027 European American cases, 383 African American cases	NA	8p12	PURG	rs2543607-C	0.4558109660574412	4E-6	(AA)	0.352	[0.2-0.5] unit decrease	Illumina [at least 988306] (imputed)	N
820	chr8	30849449	30849450	rs874168	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	8p12	NR	rs874168-T	0.5254	8E-9		1.035	[1.02-1.05]	Affymetrix, Illumina [NR] (imputed)	N
820	chr8	30852825	30852826	rs2725370	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	8p12	NR	rs2725370-C	0.7126	3E-12		0.0319	[0.023-0.041] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
820	chr8	30852825	30852826	rs2725370	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	Waist circumference	291,107 British ancestry individuals	NA	8p12	PURG	rs2725370-T	0.30343601	3E-14		0.257506	[0.19-0.32] unit increase	Affymetrix [9463307] (imputed)	N
820	chr8	30852825	30852826	rs2725370	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	8p12		rs2725370-T	0.3017	5E-20		0.0141	[0.011-0.017] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
820	chr8	30852825	30852826	rs2725370	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	8p12	Intergenic	rs2725370-T	0.3017	4E-25	(MTAG)	0.0149	[0.012-0.018] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
820	chr8	30854032	30854033	rs2725371	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls, 22,356 East Asian ancestry cases, 156,370 East Asian ancestry controls	NA	8p12		rs2725371-G	NR	5E-9		0.0464	[0.031-0.062] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
820	chr8	30854032	30854033	rs2725371	32589924	Bi W	2020-06-23	Am J Hum Genet	A Fast and Accurate Method for Genome-Wide Time-to-Event Data Analysis and Its Application to UK Biobank.	Essential hypertension (time to event)	76,566 British ancestry cases, 206,305 British ancestry controls	NA	8p12	PURG	rs2725371-?	NR	3E-8				NR [~ 24000000] (imputed)	N
820	chr8	30854032	30854033	rs2725371	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	8p12	NR	rs2725371-G	0.6895	2E-13		0.0371	[0.027-0.047] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
820	chr8	30854032	30854033	rs2725371	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		8p12	PURG	rs2725371-A	0.303859	2E-11		0.0100376	[0.0071-0.013] unit increase	Affymetrix [12370749]	N
820	chr8	30854032	30854033	rs2725371	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	417,580 European ancestry individuals	NA	8p12		rs2725371-A	0.302309	5E-6		0.01	[0.0061-0.0139] unit decrease	NR [7250403] (imputed)	N
820	chr8	30854032	30854033	rs2725371	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	8p12	NR	rs2725371-?	NR	2E-13				Affymetrix [~ 8270000] (imputed)	N
820	chr8	30854032	30854033	rs2725371	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	8p12		rs2725371-?	NR	3E-12				NR [~ 8900000] (imputed)	N
820	chr8	30854032	30854033	rs2725371	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	8p12	NA	rs2725371-A	0.3	1E-15		0.0172	[0.013-0.021] unit increase	NR [~ 27400000] (imputed)	N
820	chr8	30854032	30854033	rs2725371	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	8p12	NR	rs2725371-A	0.3	1E-15		0.0172	[0.013-0.021] unit increase	NR [~ 27400000] (imputed)	N
820	chr8	30854032	30854033	rs2725371	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	8p12	Intergenic	rs2725371-A	0.3046	6E-19	(MTAG)	0.0173	[0.014-0.021] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
820	chr8	30854032	30854033	rs2725371	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	8p12	Intergenic	rs2725371-A	0.3044	2E-26	(MTAG)	0.0191	[0.016-0.023] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
820	chr8	30854032	30854033	rs2725371	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	8p12	Intergenic	rs2725371-A	0.3025	3E-16	(MTAG)	0.0204	[0.016-0.025] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
820	chr8	30856463	30856464	rs1362910	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	8p12	Intergenic	rs1362910-A	0.4168	6E-15		0.0179	[0.013-0.022] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
820	chr8	30858053	30858054	rs1125841	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	8p12	NA	rs1125841-T	0.6032	1E-12		0.0123	[0.009-0.0156] unit decrease	NR [~ 27400000] (imputed)	N
820	chr8	30861606	30861607	rs11776713	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	8p12	NR	rs11776713-C	0.4778	1E-9		0.015107302	[0.01-0.02] unit decrease	Affymetrix [10549349] (imputed)	N
820	chr8	30863288	30863288	rs11451120	30898391	Lawrenson K	2019-03-19	Gynecol Oncol	Genome-wide association studies identify susceptibility loci for epithelial ovarian cancer in east Asian women.	Epithelial ovarian cancer	3,238 East Asian ancestry cases, 4,083 East Asian ancestry controls	NA	8p12		rs11451120-?	NR	8E-6	(overall)	1.24		Illumina [11595112] (imputed)	N
820	chr8	30863721	30863722	rs10087241	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	8p12	PURG	rs10087241-G	0.405106648266454	3E-9		0.0475	[0.032-0.063] unit increase	NR [5035015] (imputed)	N
820	chr8	30863937	30863938	rs10954772	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	8p12		rs10954772-C	NR	8E-13		0.0148	[0.011-0.019] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
820	chr8	30863937	30863938	rs10954772	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	8p12		rs10954772-C	NR	2E-15		0.0187	[0.014-0.023] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
820	chr8	30863937	30863938	rs10954772	31589552	Lind L	2019-10-07	Metab Syndr Relat Disord	Genome-Wide Association Study of the Metabolic Syndrome in UK Biobank.	Metabolic syndrome	291,107 European ancestry individuals	NA	8p12	PURG	rs10954772-T	0.313991	3E-8		0.0391984	[0.025-0.053] unit increase	Affymetrix [9463307] (imputed)	N
820	chr8	30863937	30863938	rs10954772	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	8p12		rs10954772-?	NR	2E-13				NR [~ 8900000] (imputed)	N
820	chr8	30863937	30863938	rs10954772	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	8p12	PURG	rs10954772-T	0.3135	2E-9		1.04	[1.03-1.06]	Affymetrix, Illumina [~ 27000000] (imputed)	N
820	chr8	30863937	30863938	rs10954772	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	8p12	NA	rs10954772-T	0.3193	5E-14		0.0155	[0.011-0.02] unit increase	NR [~ 27400000] (imputed)	N
820	chr8	30863937	30863938	rs10954772	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	8p12	Intergenic	rs10954772-T	0.3223	2E-13		0.0154	[0.011-0.02] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
820	chr8	30865732	30865733	rs1421334	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	8p12	PURG	rs1421334-C	0.4481	4E-9		0.011925409	[0.008-0.0159] unit increase	Affymetrix [up to 18485882] (imputed)	N
820	chr8	30865732	30865733	rs1421334	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	8p12	PURG	rs1421334-A	NR	1E-9		0.018177994	[0.012-0.024] unit decrease	Affymetrix [NR]	N
820	chr8	30867561	30867562	rs2725377	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Verbal-numerical reasoning	171,304 British ancestry individuals	NA	8p12		rs2725377-?	NR	3E-8				NR [7857346] (imputed)	N
820	chr8	30879206	30879207	rs13278931	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls	NA	8p12	PURG	rs13278931-T	0.443525	4E-9		0.047323152	[0.032-0.063] unit increase	Affymetrix [7288503] (imputed)	N
820	chr8	30879206	30879207	rs13278931	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	8p12	PURG	rs13278931-T	NR	1E-8		5.692	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
820	chr8	30890222	30890223	rs11574153	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		PURG	rs11574153-?	NR	7E-9	(female)	0.471904	[NR] unit increase	Affymetrix [NR] (imputed)	N
820	chr8	30906088	30906089	rs62506074	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	8p12		rs62506074-T	0.343	9E-10		0.0091	[0.0062-0.012] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
820	chr8	30907360	30907361	rs138049134	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		WRN	rs138049134-?	NR	3E-8	(female)	0.374256	[NR] unit increase	Affymetrix [NR] (imputed)	N
820	chr8	30924556	30924557	rs1800389	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	8p12		rs1800389-?	NR	4E-8				NR [~ 8900000] (imputed)	N
821	chr8	30936355	30936356	rs2553268	17903301	Vasan RS	2007-09-19	BMC Med Genet	Genome-wide association of echocardiographic dimensions, brachial artery endothelial function and treadmill exercise responses in the Framingham Heart Study.	Exercise treadmill test traits	Up to 1,238 European ancestry individuals	NA	8p12	WRN	rs2553268-?	NR	6E-6	(S2ESBP)			Affymetrix [70897]	N
821	chr8	30956653	30956654	rs12549825	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	8p12		rs12549825-G	NR	2E-8		0.0121	[0.008-0.0162] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
821	chr8	30964210	30964211	rs13251813	31263163	Liu CT	2019-07-01	Sci Rep	Genome-wide Association Study of Change in Fasting Glucose over time in 13,807 non-diabetic European Ancestry Individuals.	Fasting glucose change (long-term)	3,669 European ancestry individuals	NA	8p12	WRN	rs13251813-T	0.065	3E-7		0.312	[0.19-0.43] unit decrease	Affymetrix, Illumina [~ 25000000] (imputed)	N
821	chr8	30990109	30990110	rs2252480	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Longevity	up to 482,000 European ancestry individuals	NA	8p12	NR	rs2252480-A	NR	5E-6		0.009538	[0.0054-0.0136] unit increase	Illumina [~ 540852]	N
821	chr8	30993185	30993186	rs41520844	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA		NR	rs41520844-?	NR	2E-11				Affymetrix [NR]	N
821	chr8	31004581	31004582	rs11574358	25918517	Yashin AI	2015-04-13	Front Genet	Genetics of aging, health, and survival: dynamic regulation of human longevity related traits.	Lifespan	679 female individuals	432 male individuals	8p12	WRN	rs11574358-?	0.074	6E-8	(females)	5.584	[NR] unit increase	Affymetrix [429783]	N
821	chr8	31011468	31011469	rs117173564	28084903	Hallberg P	2017-01-13	Pharmacogenomics	Genetic variants associated with angiotensin-converting enzyme inhibitor-induced cough: a genome-wide association study in a Swedish population.	Cough in response to angiotensin-converting enzyme inhibitor drugs	123 European ancestry cases, 1,345 European and unknown ancestry controls, 1 Middle Eastern ancestry case	NR	8p12	WRN	rs117173564-?	NR	2E-6		6.07	[2.88-12.82]	Illumina [8600000] (imputed)	N
821	chr8	31013469	31013470	rs2737339	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	8p12	NR	rs2737339-A	0.369781	5E-10		0.04038765	[0.028-0.053] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
821	chr8	31013469	31013470	rs2737339	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	8p12	Intergenic	rs2737339-A	0.6127	4E-14	(MTAG)	0.0177	[0.013-0.022] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
821	chr8	31013469	31013470	rs2737339	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	8p12	Intergenic	rs2737339-A	0.6127	4E-10		0.0183	[0.013-0.024] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
821	chr8	31016281	31016282	rs16877794	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	8p12	NR	rs16877794-?	NR	2E-7		5.212	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
821	chr8	31019596	31019597	rs10954779	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	8p12	NR	rs10954779-T	NR	3E-9		5.93	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
821	chr8	31019596	31019597	rs10954779	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	8p12	WRN	rs10954779-T	NR	2E-8		0.017427584	[0.011-0.023] unit decrease	Affymetrix [NR]	N
821	chr8	31020007	31020008	rs62506104	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	8p12		rs62506104-A	0.1923	4E-8		0.0098	[0.0063-0.0133] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
821	chr8	31020007	31020008	rs62506104	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	8p12	Intergenic	rs62506104-A	0.1923	3E-8	(MTAG)	0.0093	[0.006-0.0126] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
821	chr8	31034274	31034275	rs11774682	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	8p12	NR	rs11774682-C	0.966250893300248	1E-6	(IGP59)	0.827	[0.49-1.16] unit increase	Illumina [~ 2500000] (imputed)	N
821	chr8	31034274	31034275	rs11774682	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	8p12	NR	rs11774682-C	0.966180189368771	3E-6	(IGP42)	0.8017	[0.47-1.14] unit decrease	Illumina [~ 2500000] (imputed)	N
821	chr8	31034274	31034275	rs11774682	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	8p12	NR	rs11774682-C	0.96615368329177	1E-6	(IGP2)	0.8276	[0.49-1.16] unit decrease	Illumina [~ 2500000] (imputed)	N
822	chr8	31093599	31093600	rs137869973	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		8p12	Intergenic	rs137869973-T	0.025	2E-7	(liability model)	0.31	[0.19-0.43] unit increase	NR [19725427] (imputed)	N
822	chr8	31103446	31103447	rs10112240	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	8p12	NR	rs10112240-?	NR	2E-10				Affymetrix [NR]	N
822	chr8	31113780	31113781	rs7004049	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Systolic blood pressure change trajectory	13,137 European ancestry individuals	2,451 European ancestry individuals	8p12	NR	rs7004049-T	0.8824	1E-6		0.0882	[0.053-0.123] mmHg decrease	Affymetrix, Illumina [NR] (imputed)	N
822	chr8	31174829	31174830	rs2575029	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	8p12	LOC642513	rs2575029-A	0.229	6E-6	(Diet protein )	0.03	[NR] %energy increase	Illumina [899892]	N
823	chr8	31307489	31307490	rs13278352	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8p12	WRN	rs13278352-?	NR	8E-6	(tauro deoxycholate)	0.3128318	[0.18-0.45] unit increase	Affymetrix [at least 2500000] (imputed)	N
824	chr8	31327048	31327049	rs7004520	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	8p12	NR	rs7004520-?	NR	2E-7	(Japanese)	0.5201	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
824	chr8	31342466	31342467	rs6468049	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	8p12	NR	rs6468049-T	NR	2E-6		1.05	[NR]	Illumina [7158791] (imputed)	N
824	chr8	31353408	31353409	rs2681616	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	8p12		rs2681616-A	0.4902	6E-10	(conditional-joint)	0.0087	[0.006-0.0114] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
824	chr8	31359813	31359814	rs4376462	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	8p12	NR	rs4376462-T	0.398608	3E-9		0.042573854	[0.029-0.057] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
824	chr8	31362196	31362197	rs4552855	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	8p12	Intergenic	rs4552855-T	0.4903	7E-10	(MTAG)	0.0081	[0.0056-0.0106] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
824	chr8	31417624	31417625	rs35447033	34446064	Cade BE	2021-08-26	Genome Med	Whole-genome association analyses of sleep-disordered breathing phenotypes in the NHLBI TOPMed program.	Obstructive sleep apnea trait (apnea hypopnea index)	8,341 European ancestry individuals	NA	8p12		rs35447033-T	NR	3E-9		2.368	[1.59-3.15] unit increase	Affymetrix, Illumina [22105437] (imputed)	N
824	chr8	31445495	31445496	rs763553	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	8p12		rs763553-A	0.4452	6E-10		0.0087	[0.006-0.0114] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
825	chr8	31479622	31479623	rs10954808	25897834	Biernacka JM	2015-04-21	Transl Psychiatry	The International SSRI Pharmacogenomics Consortium (ISPC): a genome-wide association study of antidepressant treatment response.	Response to serotonin reuptake inhibitors in major depressive disorder	298 European ancestry cases, 567 Asian ancestry cases, 1529 European and other ancestry cases	NA	8p12	NRG1	rs10954808-?	NR	1E-6	(Response)	1.37	[NR]	Illumina [~ 7000000] (imputed)	N
825	chr8	31500221	31500222	rs1081063	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota alpha diversity (PD_whole_tree index)	1,068 Japanese ancestry individuals	NA	8p12	NRG1	rs1081063-G	0.41	5E-6	(male)	1.14	[0.65-1.63] unit increase	Illumina [6380737] (imputed)	N
825	chr8	31567005	31567006	rs4733271	23247143	Yu B	2012-12-16	Circ Cardiovasc Genet	Association of genome-wide variation with highly sensitive cardiac troponin-T levels in European Americans and Blacks: a meta-analysis from atherosclerosis risk in communities and cardiovascular health studies.	Cardiac Troponin-T levels	9,491 European ancestry individuals, up to 2,053 African American individuals	NA	8p12	NRG1	rs4733271-A	NR	5E-6	(Continuous Variable)	0.04	[0.02-0.06] ug/L increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
825	chr8	31568332	31568333	rs755186024	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	8p12	NRG1	rs755186024-A	0.9989	2E-6		1.6178	[0.95-2.28] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
826	chr8	31633446	31633447	rs10503887	17903296	Kiel DP	2007-09-19	BMC Med Genet	Genome-wide association with bone mass and geometry in the Framingham Heart Study.	Hip geometry	Up to 1,094 individuals from 241 families	NA	8p12	NRG1	rs10503887-?	NR	2E-7	(ShaftZ1R)			Affymetrix [70897]	N
826	chr8	31644359	31644360	rs7817052	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8p12	WRN	rs7817052-?	NR	4E-6	(thiamine)	0.17854747	[0.1-0.25] unit decrease	Affymetrix [at least 2500000] (imputed)	N
826	chr8	31671329	31671330	rs13255030	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	8p12		rs13255030-?	NR	9E-9				NR [~ 8900000] (imputed)	N
826	chr8	31691758	31691759	rs75060108	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	8p12	NRG1	rs75060108-?		9E-7	(heterogeneous)	0.263	[0.16-0.37] unit decrease	Illumina [1492601] (imputed)	N
826	chr8	31691758	31691759	rs75060108	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	8p12	NRG1	rs75060108-?		6E-6	(additive)	0.223	[0.13-0.32] unit decrease	Illumina [1492601] (imputed)	N
826	chr8	31691758	31691759	rs75060108	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	8p12	NRG1	rs75060108-?		1E-6	(dominant)	0.253	[-0.47612-0.98212] unit decrease	Illumina [1492601] (imputed)	N
827	chr8	31765585	31765586	rs34344642	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	8p12		rs34344642-T	0.07832	3E-9		0.024	[0.016-0.032] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
827	chr8	31768902	31768903	rs28668895	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid pneumonia vs population)	1,004 European ancestry cases, 680,354 European ancestry controls, 218 Hispanic or Latin American cases, 94,318 Hispanic or Latin American controls, 64 Black or African American cases, 22,412 Black or African American controls	NA	8p12		rs28668895-?	NR	3E-6		0.2573443	[0.15-0.36] unit increase	Illumina [9901720] (imputed)	N
827	chr8	31770405	31770406	rs1680170	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (severe respiratory symptoms vs population)	1,128 European ancestry cases, 679,531 European ancestry controls, 245 Hispanic or Latin American cases, 94,237 Hispanic or Latin American controls, 74 Black or African American cases, 22,383 Black or African American controls	NA	8p12		rs1680170-?	NR	2E-6		0.2467292	[0.15-0.35] unit decrease	Illumina [9906551] (imputed)	N
827	chr8	31794108	31794109	rs1462872	23870195	Wojczynski MK	2013-07-19	BMC Med Genet	Genetics of coronary artery calcification among African Americans, a meta-analysis.	Coronary artery calcification	5,823 African American individuals	9,992 European ancestry individuals	8p12	NRG1	rs1462872-A	0.56	9E-6	(AA)	0.16	[0.082-0.238] unit decrease	Affymetrix, Illumina [up to 2727966] (imputed)	N
827	chr8	31817492	31817493	rs71523448	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	8p12	WRN, NRG1	rs71523448-G	0.9212	2E-13		1.0518565		Affymetrix [11880941] (imputed)	N
827	chr8	31817492	31817493	rs71523448	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	8p12	WRN, NRG1	rs71523448-G	0.9212	2E-13		1.051166		Affymetrix [11880941] (imputed)	N
828	chr8	31967957	31967958	rs1481757	26835600	Hu Y	2016-02-02	Nat Commun	GWAS of 89,283 individuals identifies genetic variants associated with self-reporting of being a morning person.	Morning vs. evening chronotype	38,937 European ancestry morning chronotype individuals, 50,346 European ancestry evening chronotype individuals	NA	8p12	NR	rs1481757-?	NR	9E-8				Illumina [7427422] (imputed)	N
829	chr8	32034124	32034125	rs139389953	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Bacteroides A plebeius abundance in stool	5,959 Finnish ancestry individuals	NA	8p12		rs139389953-A	0.011402	2E-8		0.466232	[0.3-0.63] unit increase	Illumina [7980478] (imputed)	N
830	chr8	32137609	32137610	rs4733117	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-2 receptor antagonist levels	3,677 Finnish ancestry individuals	NA	8p12	NR	rs4733117-C		3E-6		0.1369	[0.08-0.194] SD units decrease	NR [10700000] (imputed)	N
830	chr8	32139651	32139652	rs1487141	23934736	Yu B	2013-08-11	Genet Epidemiol	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels  (X-11787)	1,260 African American individuals	NA	8p12	NRG1	rs1487141-C		3E-6		0.04	[0.02-0.06] unit increase	Affymetrix [~ 2500000] (imputed)	N
830	chr8	32232826	32232827	rs2347503	25644384	Davies G	2015-02-03	Mol Psychiatry	Genetic contributions to variation in general cognitive function: a meta-analysis of genome-wide association studies in the CHARGE consortium (N=53949).	Cognitive function	51,719 European ancestry individuals, 1,473 Erasmus Rucphen (founder/genetic isolate) individuals, 327 Korculan (founder/genetic isolate) individuals, 430 Orcadian (founder/genetic isolate) individuals	NA	8p12	NRG1	rs2347503-?	NR	8E-6		0.0465	[0.026-0.067] unit decrease	Affymetrix, Illumina [2478500] (imputed)	N
831	chr8	32248016	32248017	rs10755888	34106200	Machipisa T	2021-06-09	JAMA Cardiol	Association of Novel Locus With Rheumatic Heart Disease in Black African Individuals: Findings From the RHDGen Study.	Rheumatic heart disease	1,687 Sub-Saharan African ancestry and African ancestry cases, 1,492 Sub-Saharan African ancestry and African ancestry controls, 601 European ancestry, South East Asian ancestry, South Asian ancestry, African ancestry and South African ancestry cases, 454 European ancestry, South East Asian ancestry, South Asian ancestry, African ancestry and South African ancestry controls	NA	8p12	NRG1	rs10755888-?	NR	9E-7		0.71	0.57-0.84	Illumina [7605010] (imputed)	N
831	chr8	32248016	32248017	rs10755888	34106200	Machipisa T	2021-06-09	JAMA Cardiol	Association of Novel Locus With Rheumatic Heart Disease in Black African Individuals: Findings From the RHDGen Study.	Rheumatic heart disease	1,687 Sub-Saharan African ancestry and African ancestry cases, 1,492 Sub-Saharan African ancestry and African ancestry controls	NA	8p12	NRG1	rs10755888-?	NR	2E-6		0.69	0.53-0.84	Illumina [7605010] (imputed)	N
831	chr8	32311308	32311309	rs62500182	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Bacterial meningitis	842 European ancestry cases, 82,778 European ancestry controls	NA	8p12	NR	rs62500182-?	NR	7E-6		0.8773	[0.53-1.22] unit increase	Illumina [at least 560000] (imputed)	N
831	chr8	32318354	32318355	rs12542743	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Chagas cardiomyopathy in Tripanosoma cruzi seropositivity	207 Brazilian ancestry cases, 306 Brazilian ancestry controls	NA	8p12	NR	rs12542743-?	NR	4E-6				Affymetrix [5486770] (imputed)	N
831	chr8	32333569	32333570	rs1878918	28054174	Leslie EJ	2017-01-04	Hum Genet	Genome-wide meta-analyses of nonsyndromic orofacial clefts identify novel associations between FOXE1 and all orofacial clefts, and TP63 and cleft lip with or without cleft palate.	Cleft lip with or without cleft palate	83 Asian ancestry cases, 1,173 Asian ancestry case-parent trios, 161 Asian ancestry controls,170 European ancestry cases, 988 European ancestry case-parent trios, 835 European ancestry controls, 570 Latino or African cases, 629 Latino or African case-parent trios, 704 Latino or African controls, 21 case-parent trios.	NA	8p12	NRG1	rs1878918-?	NR	3E-7		1.29	[1.15-1.45] (GENEVA cohort)	Illumina [6090031] (imputed)	N
831	chr8	32346294	32346295	rs10097555	25325441	Baik I	2015-07-01	Sleep	Associations of Sleep Apnea, NRG1 Polymorphisms, Alcohol Consumption, and Cerebral White Matter Hyperintensities: Analysis with Genome-Wide Association Data.	Obstructive sleep apnea	235 Korean ancestry cases, 235 Korean ancestry controls	NA	8p12	NRG1	rs10097555-A		5E-6	(additive model)	2.5	[1.67-3.7]	Affymetrix [319517] (imputed)	N
831	chr8	32353179	32353180	rs2347498	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Chin dimples	58,032 European ancestry cases, 13,457 European ancestry controls	NA	8p12	NRG1	rs2347498-?	NR	2E-9		1.0928961	[1.06-1.13]	Illumina [13537761] (imputed)	N
831	chr8	32364717	32364718	rs138138889	30694715	Sakornsakolpat P	2019-01-29	Am J Respir Cell Mol Biol	Genome-Wide Association Analysis of Single Breath Diffusing Capacity of Carbon Monoxide (DLCO).	Diffusing capacity of carbon monoxide	2,584 European ancestry individuals with chronic obstructive pulmonary disease, 3,002 European ancestry healthy individuals, 343 African American individuals with chronic obstructive pulmonary disease, 1,006 African American healthy individuals	NA	8p12	NRG1	rs138138889-C	0.02	6E-7	(EA)	0.39	0.23-0.54 unit decrease	Illumina [NR] (imputed)	N
831	chr8	32365694	32365695	rs68189791	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	8p12	NR	rs68189791-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
832	chr8	32380834	32380835	rs10088648	28054174	Leslie EJ	2017-01-04	Hum Genet	Genome-wide meta-analyses of nonsyndromic orofacial clefts identify novel associations between FOXE1 and all orofacial clefts, and TP63 and cleft lip with or without cleft palate.	Orofacial clefts	83 Asian ancestry cases, 1,445 Asian ancestry case-parent trios, 161 Asian ancestry controls, 208 European ancestry cases, 1,284 European ancestry case-parent trios, 835 European ancestry controls, 610 Latino or African cases, 663 Latino or African case-parent trios, 704 Latino or African controls, 35 case-parent trios.	NA	8p12	NRG1	rs10088648-?	NR	1E-7		1.2195122	[1.1-1.35] (GENEVA cohort)	Illumina [6090031] (imputed)	N
832	chr8	32381176	32381177	rs77752517	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	8p12		rs77752517-?	NR	3E-8				NR [~ 8900000] (imputed)	N
832	chr8	32384774	32384775	rs6651145	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	150,266 East Asian ancestry individuals	NA	8p12		rs6651145-C	0.824674	2E-8		0.0208669	[0.014-0.028] unit decrease	Illumina [13478778] (imputed)	N
832	chr8	32390554	32390554	rs527953512	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	8p12	intergenic	rs527953512-CA	0.4009	4E-8		0.1902	[0.12-0.26] mmHg increase	Affymetrix [NR] (imputed)	N
832	chr8	32395517	32395518	rs28594215	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	8p12	NRG1	rs28594215-G		2E-8		0.144	unit decrease	Affymetrix [at least 2696785] (imputed)	N
832	chr8	32397932	32397933	rs7820676	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	8p12	NR	rs7820676-G	0.108061	8E-14		0.022251	[0.016-0.028] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
832	chr8	32399661	32399662	rs4489283	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	8p12	RP11-1002K11.1	rs4489283-C	0.6897	2E-9		5.964	NR z score increase	Illumina [26237160] (imputed)	N
832	chr8	32399661	32399662	rs4489283	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	8p12	NRG1	rs4489283-T	0.296	2E-8		0.325	[0.14-0.51] ml/min/1.73m2 decrease	Affymetrix, Illumina [at least 5248638] (imputed)	N
832	chr8	32399848	32399849	rs4422737	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	8p12		rs4422737-A	NR	4E-21		0.0167	[0.013-0.02] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
832	chr8	32400114	32400115	rs7826312	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	8p12	NR	rs7826312-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
832	chr8	32400114	32400115	rs7826312	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	8p12		rs7826312-?	NR	1E-8				NR [~ 8900000] (imputed)	N
832	chr8	32400114	32400115	rs7826312	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	8p12	NA	rs7826312-T	0.4319	3E-11		0.0109	[0.0078-0.014] unit decrease	NR [~ 27400000] (imputed)	N
832	chr8	32400627	32400628	rs7000590	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	8p12		rs7000590-?	NR	4E-11				NR [~ 8900000] (imputed)	N
832	chr8	32400802	32400803	rs6996585	28703219	Son HY	2017-07-13	Nat Commun	Genome-wide association and expression quantitative trait loci studies identify multiple susceptibility loci for thyroid cancer.	Papillary thyroid cancer	410 Korean ancestry cases, 8,279 Korean ancestry controls	587 Korean ancestry cases, 605 Korean ancestry controls	8p12	NRG1	rs6996585-G	0.23	9E-12		1.43	[NR]	Affymetrix, Illumina [3593389] (imputed)	N
832	chr8	32400802	32400803	rs6996585	28703219	Son HY	2017-07-13	Nat Commun	Genome-wide association and expression quantitative trait loci studies identify multiple susceptibility loci for thyroid cancer.	Differentiated thyroid cancer	470 Korean ancestry cases, 8,279 Korean ancestry controls	615 Korean ancestry cases, 605 Korean ancestry controls	8p12	NRG1	rs6996585-G	0.23	1E-10		1.39	[NR]	Affymetrix, Illumina [3593389] (imputed)	N
832	chr8	32401500	32401501	rs7005606	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	8p12	NRG1	rs7005606-T	0.5972	1E-10		0.0209	[0.015-0.027] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
832	chr8	32401500	32401501	rs7005606	27702942	Tang CS	2016-10-03	Hum Mol Genet	Trans-ethnic meta-analysis of genome-wide association studies for Hirschsprung disease.	Hirschsprung disease	212 European ancestry cases, 173 Chinese ancestry cases, 122 Korean ancestry cases, 202 European ancestry controls, 615 Chinese ancestry controls, 374 Korean ancestry controls	NA	8p12	NRG1	rs7005606-G	0.21	1E-11	(East Asian)	2.12	[1.70-2.63]	Affymetrix, Illumina [at least 6512116] (imputed)	N
832	chr8	32401500	32401501	rs7005606	25310821	Kim JH	2014-10-13	PLoS One	A genome-wide association study identifies potential susceptibility loci for Hirschsprung disease.	Hirschsprung disease	123 Korean ancestry cases, 432 Korean ancestry controls	NA	8p12	NRG1	rs7005606-?	NR	3E-7				Illumina [757260]	N
832	chr8	32402240	32402241	rs73234132	32133506	Li H	2020-03-05	Schizophr Bull	Genome-wide Association Study of Creativity Reveals Genetic Overlap With Psychiatric Disorders, Risk Tolerance, and Risky Behaviors.	Creativity	4,664 Han Chinese ancestry individuals	NA	8p12	NRG1-IT3	rs73234132-T		2E-6		4.99	[NR] unit decrease	Illumina [up to 5481607] (imputed)	N
832	chr8	32402240	32402241	rs73234132	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	8p12		rs73234132-?	NR	4E-8				NR [~ 8900000] (imputed)	N
832	chr8	32403572	32403573	rs7823498	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	8p12	NRG1	rs7823498-T	0.784	3E-6		0.013	NR unit increase	Illumina [NR] (imputed)	N
832	chr8	32403572	32403573	rs7823498	26030696	Cho MH	2015-06-01	Am J Respir Crit Care Med	A Genome-Wide Association Study of Emphysema and Airway Quantitative Imaging Phenotypes.	Emphysema imaging phenotypes	5,385 European ancestry chronic obstructive pulmonary disease cases, 901 African American chronic obstructive pulmonary disease cases, 3,613 European ancestry controls, 2,132 African American controls	NA	8p12	NRG1	rs7823498-T	NR	5E-7	(%LAA-950, All)	0.098	[0.061-0.135] unit decrease	Illumina [7600000] (imputed)	N
832	chr8	32403572	32403573	rs7823498	26030696	Cho MH	2015-06-01	Am J Respir Crit Care Med	A Genome-Wide Association Study of Emphysema and Airway Quantitative Imaging Phenotypes.	Emphysema imaging phenotypes	5,385 European ancestry chronic obstructive pulmonary disease cases, 901 African American chronic obstructive pulmonary disease cases, 3,613 European ancestry controls, 2,132 African American controls	NA	8p12	NRG1	rs7823498-T	NR	1E-6	(Perc15, All)	2.0	[1.22-2.78] unit increase	Illumina [7600000] (imputed)	N
832	chr8	32405978	32405979	rs7820838	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	8p12	NRG1	rs7820838-T	0.232818195	4E-6		1.0673686	[1.038317547-1.097232475]	Illumina [10439017] (imputed)	N
832	chr8	32405978	32405979	rs7820838	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	8p12	NRG1	rs7820838-T	0.242	7E-7		0.014	NR unit decrease	Illumina [NR] (imputed)	N
832	chr8	32410109	32410110	rs4236709	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Non-small cell lung cancer	27,120 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	8p12	NR	rs4236709-G	NR	1E-12		0.89	[0.86-0.92]	NR [NR] (imputed)	N
832	chr8	32410109	32410110	rs4236709	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Lung adenocarcinoma	15,581 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	8p12	NR	rs4236709-G	NR	9E-17		0.85	[0.82-0.88]	NR [NR] (imputed)	N
832	chr8	32410109	32410110	rs4236709	31326317	Dai J	2019-07-17	Lancet Respir Med	Identification of risk loci and a polygenic risk score for lung cancer: a large-scale prospective cohort study in Chinese populations.	Non-small cell lung cancer	13,327 Chinese ancestry cases, 13,793 European ancestry cases, 13,328 Chinese ancestry controls, 14,027 European ancestry controls	NA	8p12	NRG1	rs4236709-G	0.198	1E-12		1.12	[1.09-1.16]	Illumina [~ 11000000] (imputed)	N
832	chr8	32410109	32410110	rs4236709	31326317	Dai J	2019-07-17	Lancet Respir Med	Identification of risk loci and a polygenic risk score for lung cancer: a large-scale prospective cohort study in Chinese populations.	Non-small cell lung cancer	13,327 Chinese ancestry cases, 13,793 European ancestry cases, 13,328 Chinese ancestry controls, 14,027 European ancestry controls	NA	8p12	NR	rs4236709-G	0.18	1E-9	(East Asian)	1.17	[1.11-1.23]	Illumina [~ 11000000] (imputed)	N
832	chr8	32410109	32410110	rs4236709	31326317	Dai J	2019-07-17	Lancet Respir Med	Identification of risk loci and a polygenic risk score for lung cancer: a large-scale prospective cohort study in Chinese populations.	Lung adenocarcinoma	8,762 Chinese ancestry cases, 6,819 European ancestry cases, 13,328 Chinese ancestry controls, 14,027 European ancestry controls	NA	8p12	NR	rs4236709-G	0.18	1E-10	(East Asian)	1.2	[1.13-1.27]	Illumina [~ 11000000] (imputed)	N
832	chr8	32410109	32410110	rs4236709	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung adenocarcinoma	11,273 European ancestry cases,  55,483 European ancestry controls	NA	8p12	NRG1	rs4236709-G	0.217800395	1E-10		1.1323667	[1.090261405-1.176098008]	Illumina [10439017] (imputed)	N
832	chr8	32410109	32410110	rs4236709	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	8p12	NRG1	rs4236709-A	0.784	4E-6		0.013	NR unit increase	Illumina [NR] (imputed)	N
832	chr8	32410711	32410712	rs2466104	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	8p12	NRG1	rs2466104-C	0.216	5E-6		0.013	NR unit decrease	Illumina [NR] (imputed)	N
832	chr8	32411215	32411216	rs16879552	19196962	Garcia-Barcelo MM	2009-02-05	Proc Natl Acad Sci U S A	Genome-wide association study identifies NRG1 as a susceptibility locus for Hirschsprung's disease.	Hirschsprung disease	181 Chinese ancestry cases, 346 Chinese ancestry controls	190 Chinese ancestry cases, 510 Chinese ancestry controls	8p12	NRG1	rs16879552-G	0.61	2E-8		1.68	[1.40-2.00]	Affymetrix [293836]	N
832	chr8	32412303	32412304	rs2466103	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	8p12		rs2466103-?	NR	4E-10				NR [~ 8900000] (imputed)	N
832	chr8	32412358	32412359	rs2439312	21546767	Murea M	2011-05-05	Am J Nephrol	Genome-wide association scan for survival on dialysis in African-Americans with type 2 diabetes.	Dialysis-related mortality	610 African American type 2 diabetes cases	NA	8p12	NRG1	rs2439312-?	0.24	7E-6		2.36	[1.62-3.45]	Affymetrix [832357]	N
832	chr8	32414031	32414032	rs9642727	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Thyroid cancer	1,054 European ancestry cases, 490,920 European ancestry controls, 361 East Asian ancestry cases, 178,362 East Asian ancestry controls	NA	8p12		rs9642727-C	NR	3E-9		0.2352	[0.16-0.31] unit increase	Affymetrix, Illumina [25845394] (imputed)	N
832	chr8	32416273	32416274	rs7825175	23408906	Porcu E	2013-02-07	PLoS Genet	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 14,459 European ancestry females, up to 10,936 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males	NA	8p12	NRG1	rs7825175-A	0.21	3E-9	(TSH)	0.066	[0.044-0.088] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
832	chr8	32416273	32416274	rs7825175	23408906	Porcu E	2013-02-07	PLoS Genet	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 14,459 European ancestry females, up to 10,936 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males	NA	8p12	NRG1	rs7825175-A	0.21	2E-8	(TSH - Females)	0.084	[0.055-0.113] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
832	chr8	32428202	32428203	rs4733360	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	8p12	NR	rs4733360-?	NR	5E-6				Affymetrix [NR]	N
832	chr8	32432368	32432369	rs2439302	22267200	Gudmundsson J	2012-01-22	Nat Genet	Discovery of common variants associated with low TSH levels and thyroid cancer risk.	Thyroid cancer	27,758 European ancestry individuals	1,156 European ancestry cases, up to 42,617 European ancestry controls	8p12	NRG1	rs2439302-G	0.351	2E-9		1.36	[1.23-1.50]	Illumina [~ 16000000] (imputed)	N
832	chr8	32432752	32432753	rs2466077	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	8p12		rs2466077-T	NR	3E-20		0.017	[0.013-0.021] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
832	chr8	32432752	32432753	rs2466077	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	8p12	NRG1	rs2466077-T	0.5332	2E-8		0.021748	[0.014-0.029] mg/dL decrease	Affymetrix, Illumina [8217339] (imputed)	N
832	chr8	32432795	32432796	rs2466076	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	8p12		rs2466076-T	NR	3E-9		0.0119	[0.008-0.0158] unit decrease	Affymetrix, Illumina [20538307] (imputed)	N
832	chr8	32432795	32432796	rs2466076	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	8p12	NRG1	rs2466076-T	0.545661	3E-10		0.014053032	[0.0097-0.0184] unit increase	Affymetrix [93095623] (imputed)	N
832	chr8	32432795	32432796	rs2466076	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	8p12	NRG1	rs2466076-T	0.545643	1E-11		0.015048364	[0.011-0.019] unit increase	Affymetrix [93095623] (imputed)	N
832	chr8	32432795	32432796	rs2466076	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8p12	NR	rs2466076-T	0.594765	1E-10				Affymetrix, Illumina [24332387] (imputed)	N
832	chr8	32432795	32432796	rs2466076	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	8p12	NR	rs2466076-T	0.544582	4E-11		0.01228	[0.0086-0.0159] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
832	chr8	32432795	32432796	rs2466076	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8p12	NR	rs2466076-T	0.5932	3E-12				Affymetrix, Illumina [24653286] (imputed)	N
832	chr8	32432795	32432796	rs2466076	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8p12	NR	rs2466076-T	0.591263	2E-16				Affymetrix, Illumina [24558453] (imputed)	N
832	chr8	32432795	32432796	rs2466076	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	8p12	NR	rs2466076-T	0.544675	2E-16		0.015294	[0.012-0.019] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
832	chr8	32432795	32432796	rs2466076	28195142	Gudmundsson J	2017-02-14	Nat Commun	A genome-wide association study yields five novel thyroid cancer risk loci.	Thyroid cancer	2,637 European ancestry cases, 364 non-array typed, familial imputed Icelandic ancestry cases, 134,811 European ancestry controls, 152,739 non-array typed, familial imputed Icelandic ancestry controls.	NA	8p12	NR	rs2466076-G	0.484	2E-17		1.32	1.23-1.41	Illumina [7100000] (imputed)	N
832	chr8	32432948	32432949	rs2466075	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Hypothyroidism	17,558 European ancestry cases, 117,083 European ancestry controls	NA	8p12	NRG1	rs2466075-?	NR	6E-10		1.08	[1.05-1.11]	Illumina [13676411] (imputed)	N
832	chr8	32433137	32433138	rs2466074	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Thyroid cancer	762 European ancestry cases, 410,350 European ancestry controls	NA	8p12		rs2466074-C	NR	5E-11		1.4123	NR	Affymetrix [7846216] (imputed)	N
832	chr8	32435619	32435620	rs10102889	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	8p12	NRG1	rs10102889-C	0.509	1E-9		0.0036	[0.0024-0.0048] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
832	chr8	32437993	32437994	rs2466067	25436638	Malinowski JR	2014-12-01	PLoS One	Genetic variants associated with serum thyroid stimulating hormone (TSH) levels in European Americans and African Americans from the eMERGE Network.	Serum thyroid-stimulating hormone levels	4,501 European ancestry individuals, 351 African American individuals	NA	8p12	NRG1	rs2466067-C	0.31	8E-6	(EA)	0.05	[0.03-0.07] unit decrease	Illumina [up to 905285]	N
832	chr8	32439150	32439151	rs73234178	32769997	Zhou W	2020-08-07	Nat Commun	GWAS of thyroid stimulating hormone highlights pleiotropic effects and inverse association with thyroid cancer.	Thyroid stimulating hormone levels	119,715 European ancestry individuals	NA	8p12	NRG1	rs73234178-A	0.251908851748433	2E-34		0.064	[0.054-0.074] SD decrease	Illumina [22400000] (imputed)	N
832	chr8	32443703	32443704	rs191631123	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	8p12	NRG1	rs191631123-A	0.007	2E-6		0.093	NR unit decrease	Illumina [NR] (imputed)	N
832	chr8	32457969	32457970	rs117715236	29317602	Hall LS	2018-01-10	Transl Psychiatry	Genome-wide meta-analyses of stratified depression in Generation Scotland and UK Biobank.	Major depressive disorder	6,997 European ancestry female cases, 16,172 European ancestry female controls, 3,852 European ancestry male cases, 16,034 European ancestry male controls	NA	8p12	NRG1	rs117715236-A	NR	4E-6		0.24	[0.14-0.34] unit decrease	Affymetrix, Illumina [7105178] (imputed)	N
832	chr8	32461496	32461497	rs10954864	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	8p12	NR	rs10954864-C	0.49	3E-14		0.0139	[0.01-0.018] unit increase	NR [NR]	N
832	chr8	32481630	32481631	rs146632675	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Stem cell factor levels	8,290 Finnish ancestry individuals	NA	8p12	NR	rs146632675-G		4E-6		0.5374	[0.3-0.77] SD units increase	NR [10700000] (imputed)	N
833	chr8	32512698	32512699	rs2976530	30172743	Liang X	2018-08-30	Bone	Assessing the genetic correlations between early growth parameters and bone mineral density: A polygenic risk score analysis.	Bone mineral density (hip)	2,286 European ancestry individuals	NA	8p12	NRG1	rs2976530-?	NR	4E-8				Affymetrix [753382]	N
833	chr8	32516054	32516055	rs2466048	28247064	Deming Y	2017-02-28	Acta Neuropathol	Genome-wide association study identifies four novel loci associated with Alzheimer's endophenotypes and disease modifiers.	Cerebrospinal T-tau levels	3,146 individuals	NA	8p12	NRG1	rs2466048-G	0.461	6E-6		0.027	[0.015-0.039] unit increase	Illumina [7358575] (imputed)	N
833	chr8	32533315	32533316	rs2439313	28247064	Deming Y	2017-02-28	Acta Neuropathol	Genome-wide association study identifies four novel loci associated with Alzheimer's endophenotypes and disease modifiers.	Cerebrospinal P-tau181p levels	3,146 individuals	NA	8p12	NRG1	rs2439313-A	0.405	1E-6		0.027	[0.017-0.037] unit increase	Illumina [7358575] (imputed)	N
833	chr8	32594226	32594226	rs200393053	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Stem cell factor levels	8,290 Finnish ancestry individuals	NA	8p12	NR	rs200393053-AT		1E-6		0.6565	[0.39-0.93] SD units decrease	NR [10700000] (imputed)	N
833	chr8	32602053	32602054	rs35033136	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	8p12		rs35033136-?	NR	6E-9				NR [~ 8900000] (imputed)	N
833	chr8	32608554	32608555	rs117413713	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Small vessel stroke	333 Indian ancestry cases, 2,154 Indian ancestry controls	NA	8p12		rs117413713-?	NR	8E-6		1.196979	[1.10616640471905-1.29524699926013]	Illumina [7827597] (imputed)	N
833	chr8	32613176	32613177	rs75468268	32349335	Lundback V	2020-04-27	Cells	Genome-Wide Association Study of Diabetogenic Adipose Morphology in the GENetics of Adipocyte Lipolysis (GENiAL) Cohort.	Adipose morphology	894 individuals	NA	8p12	NR	rs75468268-G	0.0134	9E-6		155.0	[87-223] unit increase	NR [9714326] (imputed)	N
833	chr8	32624827	32624828	rs3735781	31504550	Bradfield JP	2019-07-05	Hum Mol Genet	A Trans-ancestral Meta-Analysis of Genome-Wide Association Studies Reveals Loci Associated with Childhood Obesity.	Childhood obesity	8,613 European ancestry cases, 3,213 African American cases, 69 Moroccan ancestry cases, 986 Hispanic/Latino cases, 124 East Asian ancestry cases, 12,696 European ancestry controls, 1,392 African American controls, 64 Moroccan ancestry controls, 993 Hispanic/Latino controls, 454 East Asian ancestry controls	NA	8p12	NR	rs3735781-A	NR	2E-6	(EA)	0.0951	[0.056-0.134] unit increase	Affymetrix, Illumina [up to 15123508] (imputed)	N
833	chr8	32635573	32635574	rs13257518	25367360	Li Q	2014-11-04	Hum Genet	Genome-wide association study for refractive astigmatism reveals genetic co-determination with spherical equivalent refractive error: the CREAM consortium.	Refractive astigmatism	8,487 European ancestry cases aged 25 years or older, 23,481 European ancestry controls aged 25 years or older, 907 European ancestry cases aged less than 25 years, 4,733 European ancestry controls aged less than 25 years, 3,076 Asian ancestry cases aged 25 years or older, 6,219 Asian ancestry controls aged 25 years or older, 247 Chinese ancestry cases aged less than 25 years, 670 Chinese ancestry controls aged less than 25 years	NA	8p12	NRG1	rs13257518-A	0.177	2E-6	(EA, less than 25 years)	1.37	[1.202-1.561]	Affymetrix, Illumina [NR] (imputed)	N
834	chr8	32653171	32653172	rs4529426	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in dyslipidemia	295 Korean ancestry cases, 20,474 Korean ancestry controls	NA	8p12		rs4529426-C	0.01403	6E-6		2.868	[1.82-4.521]	Affymetrix [7975321] (imputed)	N
834	chr8	32697957	32697958	rs17673138	25944848	Athanasiu L	2015-05-05	J Psychopharmacol	Genome-wide association study identifies common variants associated with pharmacokinetics of psychotropic drugs.	Pharmacokinetics of olanzapine in severe mental disorder (concentration dose ratio)	Up to 290 European ancestry cases	NA	8p12	intergenic	rs17673138-C	NR	6E-8		0.4143	[NR] unit decrease	Affymetrix [686595]	N
836	chr8	32973994	32973995	rs114571830	28521775	Manichaikul A	2017-05-18	Respir Res	Genome-wide association study of subclinical interstitial lung disease in MESA.	Subclinical trait of interstitial lung disease (basilar percentage of high attenuation areas on CT scan)	2,434 European ancestry individuals, 2,470 African American individuals, 2,065 Hispanic individuals, 702 Chinese ancestry individuals	3,013 European ancestry individuals	8p12	FUT10	rs114571830-A	0.024	3E-8	(AA)	0.227	[0.15-0.31] unit increase	Affymetrix [at least 897981] (imputed)	N
836	chr8	32993710	32993711	rs74349103	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8p12	NR	rs74349103-A	0.0122	9E-9	(PABPC1)	0.2607	NR unit increase	Illumina [1671387] (imputed)	N
836	chr8	32993710	32993711	rs74349103	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8p12	NR	rs74349103-A	0.0122	9E-9	(KATNAL2)	0.05247	NR unit increase	Illumina [1671387] (imputed)	N
836	chr8	32993710	32993711	rs74349103	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8p12	NR	rs74349103-A	0.0122	6E-9	(AP1B1)	0.02433	NR unit increase	Illumina [1671387] (imputed)	N
836	chr8	32993710	32993711	rs74349103	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8p12	NR	rs74349103-A	0.0122	4E-16	(LRRC59)	0.1965	NR unit increase	Illumina [1671387] (imputed)	N
836	chr8	32993710	32993711	rs74349103	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8p12	NR	rs74349103-A	0.0122	1E-9	(VAPA)	0.05492	NR unit increase	Illumina [1671387] (imputed)	N
836	chr8	32993710	32993711	rs74349103	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8p12	NR	rs74349103-A	0.0122	1E-9	(RAB21)	0.01975	NR unit increase	Illumina [1671387] (imputed)	N
836	chr8	32993710	32993711	rs74349103	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8p12	NR	rs74349103-A	0.0122	1E-8	(SND1)	0.3369	NR unit increase	Illumina [1671387] (imputed)	N
836	chr8	32993710	32993711	rs74349103	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8p12	NR	rs74349103-A	0.0122	1E-8	(HSPA8)	1.431	NR unit increase	Illumina [1671387] (imputed)	N
836	chr8	32993710	32993711	rs74349103	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8p12	NR	rs74349103-A	0.0122	1E-8	(GMFB)	0.00876	NR unit increase	Illumina [1671387] (imputed)	N
836	chr8	32996137	32996138	rs75989043	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Time-dependent creatinine clearance change response to tenofovir treatment in HIV infection (time and treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	8p12	NR	rs75989043-?		3E-6	(African)			Illumina [~ 5140000] (imputed)	N
836	chr8	32999372	32999373	rs10098430	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Time-dependent creatinine clearance change response to tenofovir treatment in HIV infection (time and treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	8p12	NR	rs10098430-?		3E-6	(African)			Illumina [~ 5140000] (imputed)	N
836	chr8	33002871	33002872	rs55983391	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Time-dependent creatinine clearance change response to tenofovir treatment in HIV infection (time and treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	8p12	NR	rs55983391-?		3E-6	(African)			Illumina [~ 5140000] (imputed)	N
837	chr8	33087455	33087456	rs184905639	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Stem cell factor levels	8,290 Finnish ancestry individuals	NA	8p12	NR	rs184905639-G		2E-7		0.6666	[0.42-0.92] SD units increase	NR [10700000] (imputed)	N
838	chr8	33176008	33176009	rs4733156	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x short total sleep time interaction (2df test)	2,974 African American short sleepers, 365 Chinese ancestry short sleepers, 110 Asian ancestry short sleepers, at least 8,230 European ancestry short sleepers, 1,079 Hispanic/Latino short sleepers, 11,801 African American controls, 1,425 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,097 European ancestry controls, 4,023 Hispanic/Latino controls	at least 214 African American short sleepers, 629 East Asian ancestry short sleepers, up to 6,761 European ancestry short sleepers, 2,473 Hispanic short sleepers, at least 913 African American controls, 2,504 East Asian ancestry controls, up to 26,764 European ancestry controls, 9,854 Hispanic controls	8p12	FUT10	rs4733156-?	NR	2E-10		0.6798	[0.28-1.08] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
838	chr8	33184197	33184198	rs72644605	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8p12	NR	rs72644605-C	0.08362	4E-11	(SDS)	0.03859	NR unit increase	Illumina [1671387] (imputed)	N
838	chr8	33195454	33195455	rs954009	32752121	Nedoszytko B	2020-07-31	Int J Mol Sci	Results from a Genome-Wide Association Study (GWAS) in Mastocytosis Reveal New Gene Polymorphisms Associated with WHO Subgroups.	Systemic mastocytosis	93 European ancestry cases, 5,606 European ancestry controls	NA	8p12	FUC10	rs954009-C	0.2375	6E-8		2.219	[1.92-2.51]	Illumina [281811]	N
838	chr8	33211907	33211908	rs80140480	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,963 Sub-Saharan African ancestry females	NA	8p12		rs80140480-C	0.939187	6E-6		0.0242098	[0.014-0.035] unit decrease	Illumina [13900000] (imputed)	N
838	chr8	33237595	33237596	rs61679001	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	8p12	NR	rs61679001-A	0.172	2E-48	(Alpha-(1,3)-fucosyltransferase 10, FUT10.7156.2.3)	0.48	[0.42-0.54] unit increase	Affymetrix [10572788] (imputed)	N
838	chr8	33243196	33243197	rs1568119	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Stem cell factor levels	8,290 Finnish ancestry individuals	NA	8p12	NR	rs1568119-C		1E-7		0.5906	[0.37-0.81] SD units increase	NR [10700000] (imputed)	N
838	chr8	33289266	33289267	rs2732260	29724592	Pottier C	2018-04-30	Lancet Neurol	Potential genetic modifiers of disease risk and age at onset in patients with frontotemporal lobar degeneration and GRN mutations: a genome-wide association study.	Memory dysfunction in frontotemporal lobe dementia	139 European ancestry cases, 243 European ancestry controls	NA	8p12	FUT10	rs2732260-A	0.03	1E-6		5.64	[4.93-6.35]	Illumina [7033776] (imputed)	N
838	chr8	33292031	33292032	rs2732259	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8p12	RBM13	rs2732259-?	NR	7E-6	(hypoxanthine)	0.17357227	[0.098-0.249] unit increase	Affymetrix [at least 2500000] (imputed)	N
839	chr8	33304693	33304694	rs13250099	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FUT10	5,355 Icelandic ancestry individuals	NA	8p12		rs13250099-C	0.3985	3E-25		0.0463247	[0.038-0.055] unit increase	Illumina [7506463] (imputed)	N
839	chr8	33309992	33309993	rs7845722	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	NA	8p12	MAK16, TTI2	rs7845722-G	0.39959999999999996	1E-9		0.127	[0.086-0.168] unit increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
839	chr8	33330686	33330687	rs2732317	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	8p12	FUT10	rs2732317-C	0.612	3E-77	(Alpha-(1,3)-fucosyltransferase 10, FUT10.7156.2.3)	0.45	[0.41-0.49] unit decrease	Affymetrix [10572788] (imputed)	N
839	chr8	33342017	33342018	rs2037213	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	8p12		rs2037213-T	0.4061	4E-11		0.10848921	[0.077-0.14] mmHg increase	Affymetrix, Illumina [242866] (imputed)	N
839	chr8	33360206	33360207	rs10094645	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	8p12	FUT10	rs10094645-A	0.59375	4E-23	(FUT10, 7156_2_3)	0.21471898	[0.17-0.26] unit decrease	Illumina [> 1000000] (imputed)	N
839	chr8	33392022	33392023	rs6996562	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	8p12	RNF122	rs6996562-A	0.4732	2E-10		0.1235	[0.086-0.161] mmHg increase	Affymetrix [NR] (imputed)	N
839	chr8	33400209	33400213	rs201917963	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Platelet-derived growth factor BB levels	8,293 Finnish ancestry individuals	NA	8p12	NR	rs201917963-TGGCG		2E-6		0.4055	[0.24-0.57] SD units increase	NR [10700000] (imputed)	N
840	chr8	33424648	33424649	rs117853367	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	8p12		rs117853367-?	NR	2E-8				NR [~ 8900000] (imputed)	N
840	chr8	33479227	33479228	rs7829912	30271922	Clifton EAD	2018-05-03	Commun Biol	Genome-wide association study for risk taking propensity indicates shared pathways with body mass index.	Self-reported risk-taking behaviour	113,882 European ancestry cases, 322,354 European ancestry controls	NA	8p12	DUSP26	rs7829912-T	0.56	6E-9		1.024	[1.016-1.032]	Affymetrix [7736308] (imputed)	N
840	chr8	33479227	33479228	rs7829912	30181555	Strawbridge RJ	2018-09-04	Transl Psychiatry	Genetics of self-reported risk-taking behaviour, trans-ethnic consistency and relevance to brain gene expression.	Self-reported risk-taking behaviour	83,677 British ancestry cases, 244,662 British ancestry controls	2,764 South Asian ancestry cases, 3,139 African Caribbean ancestry cases, 16,169 European ancestry cases, 3,866 mixed ancestry cases, 4,267 South Asian ancestry controls, 4,341 African Caribbean ancestry controls, 31,814 European ancestry controls, 5,988 mixed ancestry controls	8p12	NR	rs7829912-T	0.56	7E-9		0.031	[0.021-0.041] unit increase	Affymetrix [NR] (imputed)	N
841	chr8	33565377	33565378	rs4469412	22542470	Ovsyannikova IG	2012-04-25	Vaccine	Genome-wide association study of antibody response to smallpox vaccine.	Immune response to smallpox vaccine (IL-6)	217 African American individuals, 580 European ancestry individuals, 217 Hispanic individuals	NA	8p12	VENTXP5	rs4469412-?		9E-7	(AA)			Illumina [NR]	N
841	chr8	33584660	33584661	rs12541362	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	8p12		rs12541362-A	0.6511	6E-15		0.018	[0.014-0.022] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
841	chr8	33584660	33584661	rs12541362	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	8p12	DUSP26	rs12541362-T	0.3405	4E-19		1.0338055		Affymetrix [11880941] (imputed)	N
841	chr8	33630936	33630937	rs7012923	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	8p12	NA	rs7012923-A	0.4402	6E-8		0.0092	[0.0059-0.0125] unit increase	NR [~ 27400000] (imputed)	N
841	chr8	33662400	33662401	rs72630922	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	8p12	NR	rs72630922-A	0.419	2E-8		0.00750852	[0.0049-0.0101] unit decrease	NR [~ 9732723] (imputed)	N
841	chr8	33665679	33665680	rs10503951	22542470	Ovsyannikova IG	2012-04-25	Vaccine	Genome-wide association study of antibody response to smallpox vaccine.	Immune response to smallpox vaccine (IL-6)	217 African American individuals, 580 European ancestry individuals, 217 Hispanic individuals	NA	8p12	LOC388460	rs10503951-?		3E-9	(AA)			Illumina [NR]	N
841	chr8	33670378	33670379	rs10954935	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	8p12	DUSP26	rs10954935-C	0.578	5E-9		0.007	[0.0046-0.0094] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
841	chr8	33673010	33673011	rs11786194	22542470	Ovsyannikova IG	2012-04-25	Vaccine	Genome-wide association study of antibody response to smallpox vaccine.	Immune response to smallpox vaccine (IL-6)	217 African American individuals, 580 European ancestry individuals, 217 Hispanic individuals	NA	8p12	LOC388460	rs11786194-?		9E-7	(AA)			Illumina [NR]	N
841	chr8	33680978	33680979	rs7001604	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	8p12		rs7001604-?	NR	1E-12				NR [~ 8900000] (imputed)	N
842	chr8	33729199	33729200	rs6993892	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	8p12	DUSP26	rs6993892-C	0.38380000000000003	5E-20		1.0339123		Affymetrix [11880941] (imputed)	N
842	chr8	33729199	33729200	rs6993892	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	8p12	DUSP26	rs6993892-C	0.38380000000000003	5E-20		1.0353091		Affymetrix [11880941] (imputed)	N
842	chr8	33770069	33770070	rs11997175	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	8p12	DUSP26	rs11997175-C	0.496	6E-6		0.013	[0.0075-0.0189] kg/m2 increase	Affymetrix, Illumina [2550021]	N
842	chr8	33770069	33770070	rs11997175	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	8p12	DUSP26	rs11997175-C	0.495	4E-6	(EA)	0.014	[0.008-0.0202] kg/m2 increase	Affymetrix, Illumina [2550021]	N
842	chr8	33812929	33812930	rs36083407	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Degraded stimulus continuous performance test score	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	8p12	intergenic	rs36083407-T	NR	3E-6		0.1740682	[0.1-0.25] unit decrease	Illumina [> 6200000] (imputed)	N
843	chr8	33837096	33837097	rs7459675	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	8p12	DUSP26	rs7459675-A	0.3789	2E-16		1.0305		Affymetrix [11880941] (imputed)	N
843	chr8	33946956	33946957	rs4739403	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	8p12	DUSP26	rs4739403-A	0.359	2E-16		1.0304		Affymetrix [11880941] (imputed)	N
844	chr8	33974682	33974683	rs2729984	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	8p12	Intergenic	rs2729984-T	0.2152	6E-9	(MTAG)	0.0162	[0.011-0.022] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
844	chr8	33998570	33998571	rs74804370	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	67,764 individuals	NA	8p12	NR	rs74804370-?		1E-8				NR [8377093]	N
844	chr8	33998570	33998571	rs74804370	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	8p12	NR	rs74804370-C	NR	2E-7		1.1494253	[NR]	Illumina [7158791] (imputed)	N
844	chr8	34004174	34004175	rs12541339	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	8p12	ENSG00000254302	rs12541339-?	NR	8E-9		0.01788938	[0.012-0.024] unit increase	NR [7306098]	N
844	chr8	34021137	34021138	rs75836205	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Schizophrenia (MTAG)	940,613 European ancestry individuals	NA			rs75836205-?	NR	1E-9				NR [2625067]	N
844	chr8	34021137	34021138	rs75836205	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Bipolar disorder (MTAG)	1,450,972 European ancestry individuals	NA			rs75836205-?	NR	7E-9				NR [2625067]	N
844	chr8	34021137	34021138	rs75836205	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Schizophrenia (MTAG)	at least 33,640 European ancestry cases, at least 43,456 European ancestry controls	NA		NR	rs75836205-T	0.9493	5E-8		0.15437709	[0.099-0.21] unit decrease	NR [NR]	N
844	chr8	34021137	34021138	rs75836205	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Bipolar disorder (MTAG)	65,682 individuals	NA		NR	rs75836205-?		3E-8				NR [520857]	N
844	chr8	34035514	34035515	rs1845631	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 17, height of vermillion upper lip)	2,187 European ancestry individuals	NA	8p12	NR	rs1845631-C	0.2625	8E-8		0.1829	[0.12-0.25] unit decrease	Illumina [10677593] (imputed)	N
844	chr8	34045260	34045261	rs9297216	23829686	Ding L	2013-07-05	Hum Genomics	Rank-based genome-wide analysis reveals the association of ryanodine receptor-2 gene variants with childhood asthma among human populations.	Asthma (childhood onset)	429 European ancestry affected offspring trios	52 African American affected offspring trios, 46 Hispanic affected offspring trios	8p12	intergenic	rs9297216-?	NR	1E-6				Affymetrix [786195]	N
845	chr8	34080584	34080585	rs78895722	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	8p12	NR	rs78895722-?	NR	7E-9		1.2021399	[1.14-1.26]	Affymetrix, Illumina [12447948] (imputed)	N
845	chr8	34081520	34081521	rs76545266	30610198	Soler Artigas M	2019-01-04	Mol Psychiatry	Attention-deficit/hyperactivity disorder and lifetime cannabis use: genetic overlap and causality.	Attention deficit hyperactivity disorder or cannabis use	18,345 European ancestry ADHD cases, 14,374 European ancestry cannabis use cases, 50,410 European ancestry controls	NA	8p12	intergenic	rs76545266-C	NR	2E-8		1.1764705	[1.11-1.25]	NR [5009020] (imputed)	N
845	chr8	34126947	34126948	rs6990255	23453885	Smoller JW	2013-02-27	Lancet	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NA	8p12	intergenic	rs6990255-T	NR	2E-6	(5 degree of freedom test)	1.146	[1.09-1.20]	NR [1252901] (imputed)	N
845	chr8	34126947	34126948	rs6990255	19416921	Scott LJ	2009-05-05	Proc Natl Acad Sci U S A	Genome-wide association and meta-analysis of bipolar disorder in individuals of European ancestry.	Bipolar disorder	3,683 European ancestry cases, 14,507 European ancestry controls	NA	8p12	NR	rs6990255-T	0.95	6E-6		1.33	[1.18-1.51]	Affymetrix, Illumina [2366197] (imputed)	N
845	chr8	34132074	34132075	rs10091344	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	8p12	DUSP26, LINC01288	rs10091344-A	0.34	8E-9		0.015	[0.0091-0.0209] unit decrease	Illumina [6108953] (imputed)	N
845	chr8	34152491	34152492	rs2953928	34002096	Mullins N	2021-05-17	Nat Genet	Genome-wide association study of more than 40,000 bipolar disorder cases provides new insights into the underlying biology.	Bipolar disorder	41,917 European ancestry cases, 371,549 European ancestry controls	NA	8p12	RP1-84O15.2 (lincRNA)	rs2953928-G	0.933	6E-9		0.89039	[0.85-0.93]	Affymetrix, Illumina [7549318] (imputed)	N
845	chr8	34181458	34181459	rs1458913	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	8p12		rs1458913-T	NR	6E-11		0.0128	[0.0091-0.0165] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
846	chr8	34236991	34236992	rs2609653	23453885	Smoller JW	2013-02-27	Lancet	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NA	8p12	intergenic	rs2609653-T		3E-6	(Modelling analysis)	1.13	[1.07-1.19]	NR [1252901] (imputed)	N
846	chr8	34236991	34236992	rs2609653	21254220	Jiang Y	2011-02-01	Genet Epidemiol	Propensity score-based nonparametric test revealing genetic variants underlying bipolar disorder.	Bipolar disorder	1,868 European ancestry cases, 2,938 European ancestry controls	NA	8p12	NR	rs2609653-?	NR	7E-6	(addtive)			Affymetrix [NR]	N
846	chr8	34264769	34264770	rs2590466	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	8p12		rs2590466-?	NR	2E-8				NR [~ 8900000] (imputed)	N
846	chr8	34285544	34285545	rs80318442	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	8p12	Intergenic	rs80318442-?		4E-12				NR [6786993] (imputed)	N
846	chr8	34289938	34289939	rs35112066	33594131	Donati G	2021-02-16	Sci Rep	Evidence for specificity of polygenic contributions to attainment in English, maths and science during adolescence.	Academic attainment (English)	5,983 European ancestry adolescents	NA	8p12	Rp11-258J101	rs35112066-T	NR	2E-6		0.149	[0.088-0.21] unit increase	Illumina [6319684] (imputed)	N
846	chr8	34308160	34308161	rs181807762	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	8p12	intergenic	rs181807762-T	0.010251114853689	1E-6	(G_Coprococcus_HB)	1.54015	[0.92-2.16] unit decrease	Illumina [7711310] (imputed)	N
846	chr8	34324580	34324581	rs4739570	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	8p12	NA	rs4739570-A	0.6204	1E-9		0.0107	[0.0072-0.0142] unit increase	NR [~ 27400000] (imputed)	N
846	chr8	34325316	34325317	rs72634682	31409800	Pazoki R	2019-08-13	Nat Commun	GWAS for urinary sodium and potassium excretion highlights pathways shared with cardiovascular traits.	Urinary sodium excretion	446,237 European ancestry individuals	7,612 African ancestry individuals, 10,095 South Asian ancestry individuals	8p12	NOVA1-AS1	rs72634682-G	0.861156	1E-8	(EA)	0.0102914	[0.0068-0.0138] unit decrease	Affymetrix [~ 8800000] (imputed)	N
847	chr8	34352609	34352610	rs74760947	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Major depressive disorder vs ADHD (ordinary least squares (OLS))	170,756 MDD cases, 19,099 ADHD cases	NA	8p12		rs74760947-?	NR	2E-8		0.0128	NR unit decrease	NR [5568121] (imputed)	N
847	chr8	34352609	34352610	rs74760947	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Attention deficit hyperactivity disorder (MTAG)	61,421 individuals	NA	8p12	NR	rs74760947-?		4E-9				NR [520857]	N
847	chr8	34352609	34352610	rs74760947	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Attention deficit hyperactivity disorder	55,374 individuals	NA	8p12	NR	rs74760947-?		1E-8				NR [8028859]	N
847	chr8	34352609	34352610	rs74760947	30610198	Soler Artigas M	2019-01-04	Mol Psychiatry	Attention-deficit/hyperactivity disorder and lifetime cannabis use: genetic overlap and causality.	Attention deficit hyperactivity disorder or cannabis use	18,345 European ancestry ADHD cases, 14,374 European ancestry cannabis use cases, 50,410 European ancestry controls	NA	8p12	intergenic	rs74760947-G	NR	2E-10		1.1904762	[1.14-1.27]	NR [5009020] (imputed)	N
847	chr8	34352609	34352610	rs74760947	30478444	Demontis D	2018-11-26	Nat Genet	Discovery of the first genome-wide significant risk loci for attention deficit/hyperactivity disorder.	Attention deficit hyperactivity disorder	19,099 European ancestry cases, 72 non-European ancestry cases, 1,012 Han Chinese ancestry cases, 34,194 European ancestry controls, 72 non-European ancestry controls, 925 Han Chinese ancestry controls	5,085 Icelandic ancestry cases, 5,857 cases, 131,122 Icelandic ancestry controls, 70,393 controls	8p12	LINC01288	rs74760947-G	NR	5E-6		1.004	NR	Affymetrix, Illumina, Perlegen [8047421] (imputed)	N
847	chr8	34380275	34380276	rs6468266	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	8p12		rs6468266-A	NR	1E-10		0.0135	[0.0094-0.0176] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
847	chr8	34406539	34406540	rs7826177	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	8p12	UNC5D	rs7826177-T	0.364577	1E-8		0.0112826	[0.0074-0.0152] unit decrease	Affymetrix [NR] (imputed)	N
848	chr8	34488073	34488074	rs10954968	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	8p12	RPL21P80	rs10954968-A	0.751310096235149	4E-8		0.01884316	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
848	chr8	34502570	34502571	rs4463416	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	8p12	NR	rs4463416-C	0.3518	1E-8		0.0237	[0.016-0.032] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
848	chr8	34503775	34503776	rs7844647	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	8p12	NR	rs7844647-C	NR	2E-9		0.017	[0.012-0.022] unit increase	Affymetrix [9000000] (imputed)	N
848	chr8	34503775	34503776	rs7844647	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	8p12	UNC5D	rs7844647-T	0.739	5E-6	(EA)	0.016	[0.0089-0.0227] kg/m2 increase	Affymetrix, Illumina [2550021]	N
848	chr8	34503775	34503776	rs7844647	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	8p12	UNC5D	rs7844647-T	0.719	3E-7		0.017	[0.011-0.024] kg/m2 increase	Affymetrix, Illumina [2550021]	N
848	chr8	34524002	34524003	rs6987004	22424883	Imboden M	2012-03-15	J Allergy Clin Immunol	Genome-wide association study of lung function decline in adults with and without asthma.	Pulmonary function decline	1,441 European ancestry asthma cases, 2,677 European ancestry controls	1,160 European ancestry asthma cases, 10,858 European ancestry controls	8p12	intergenic	rs6987004-?	NR	7E-6	(FEV1/FVC decline in asthmatics)	0.2583	[0.15-0.37] unit decrease	Illumina [~ 2500000] (imputed)	N
848	chr8	34525406	34525407	rs10503966	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (processing speed) x major depressive disorder interaction (2df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	8p12		rs10503966-A	0.01	3E-8				NR [NR] (imputed)	N
848	chr8	34576286	34576287	rs139340185	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder	29,475 European ancestry cases, 63,482 European ancestry controls	NA	8p12	NR	rs139340185-A	0.0102598	7E-6		1.07	[1.04-1.1]	Affymetrix [7791636] (imputed)	N
848	chr8	34579827	34579828	rs1996866	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	8p12		rs1996866-A	0.7498	2E-8		0.016	[0.01-0.022] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
849	chr8	34647692	34647693	rs10086189	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8p12	DUSP26	rs10086189-?	NR	8E-6	(proline)	1.3084868	[0.73-1.88] unit increase	Affymetrix [at least 2500000] (imputed)	N
849	chr8	34662969	34662970	rs139868495	30610198	Soler Artigas M	2019-01-04	Mol Psychiatry	Attention-deficit/hyperactivity disorder and lifetime cannabis use: genetic overlap and causality.	Attention deficit hyperactivity disorder or cannabis use	18,345 European ancestry ADHD cases, 14,374 European ancestry cannabis use cases, 50,410 European ancestry controls	NA	8p12	intergenic	rs139868495-T	NR	8E-9		1.19	[1.12-1.26]	NR [5009020] (imputed)	N
850	chr8	34739819	34739820	rs193114076	32066700	Zhang R	2020-02-05	Transl Psychiatry	Genome-wide study of immune biomarkers in cerebrospinal fluid and serum from patients with bipolar disorder and controls.	Cerebrospinal fluid immune biomarker levels	114 Scandinavian ancestry bipolar disorder cases, 83 Scandinavian ancestry controls	NA	8p12	LINC01288	rs193114076-A	0.011	1E-8	(MCP-1)	370.998	NR unit increase	Affymetrix, Illumina [> 5600000] (imputed)	N
850	chr8	34837356	34837357	rs4503095	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	8p12	NR	rs4503095-G	0.910348	2E-8		0.0300118	[0.02-0.041] unit increase	Affymetrix [16577424] (imputed)	N
851	chr8	34886759	34886760	rs7011522	32108986	Price KM	2020-02-27	Genes Brain Behav	Genome-Wide Association Study of Word Reading: Overlap with Risk Genes for Neurodevelopmental Disorders.	Reading disability	4,494 European ancestry cases, 306 European ancestry siblings	NA	8p12	DUSP26, UNC5D	rs7011522-T		2E-6		4.725	z score decrease	Illumina [5300000] (imputed)	N
851	chr8	34963950	34963951	rs2405537	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 19)	2,187 European ancestry individuals	NA	8p12	NR	rs2405537-T	0.2686	4E-6		0.1556	[0.09-0.221] unit decrease	Illumina [10677593] (imputed)	N
851	chr8	34967178	34967179	rs921449	31170924	Kong S	2019-06-06	BMC Med Genet	Identification of female-specific genetic variants for metabolic syndrome and its component traits to improve the prediction of metabolic syndrome in females.	Waist circumference	4,659 Korean ancestry females	5,273 Korean ancestry females	8p12	LOC105379369	rs921449-A	0.317225	9E-6		0.5836	[0.33-0.84] unit increase	Affymetrix [NR] (imputed)	N
851	chr8	34985790	34985791	rs2981329	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Snoring	359,916 European ancestry individuals	NA	8p12	NR	rs2981329-C	0.2551	8E-9		1.03	[1.02-1.04]	Affymetrix, Illumina [10862568] (imputed)	N
852	chr8	35039645	35039646	rs2198140	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	8p12	NR	rs2198140-?	NR	2E-6		4.794	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
852	chr8	35099764	35099765	rs1528706	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	8p12	NR	rs1528706-?	NR	8E-17				Affymetrix [NR]	N
852	chr8	35117348	35117349	rs10091394	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	8p12		rs10091394-A	0.4	6E-11		6.55	z score increase	Affymetrix [9061022] (imputed)	N
852	chr8	35122575	35122576	rs28485846	28672053	Meng W	2017-07-03	Br J Dermatol	A genome-wide association study suggests that MAPK14 is associated with diabetic foot ulcers.	Foot ulcer and neuropathy in diabetes	662 European ancestry type 2 diabetes and neuropathy cases, 37 European ancestry type 1 diabetes and neuropathy cases, 4,250 European ancestry type 1 and type 2 diabetes controls	NA	8p12	NR	rs28485846-?	NR	4E-7		2.116	[1.583-2.829]	Affymetrix, Illumina [6706850] (imputed)	N
853	chr8	35185153	35185154	rs876114	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	8p12	NA	rs876114-T	0.8444	1E-8	(Female)	1.06	[1.04-1.08]	Affymetrix, Illumina [NR] (imputed)	N
853	chr8	35190618	35190619	rs871994	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	8p12	NR	rs871994-A	0.4352	5E-9		1.036	[1.02-1.05]	Affymetrix, Illumina [NR] (imputed)	N
853	chr8	35211456	35211457	rs1919346	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	8p12		rs1919346-A	0.5251	1E-8		0.012	[0.0081-0.0159] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
853	chr8	35228272	35228273	rs4739402	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	8p12	UNC5D	rs4739402-C	0.42046875	2E-6	(UNC5D, 8624_16_3)	0.119360656	[0.07-0.168] unit increase	Illumina [> 1000000] (imputed)	N
853	chr8	35237787	35237788	rs6468316	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	8p12	UNC5D	rs6468316-C	0.5292	3E-8		1.0198953		Affymetrix [11880941] (imputed)	N
853	chr8	35237787	35237788	rs6468316	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	8p12	UNC5D	rs6468316-T	0.41734375	1E-8	(UNC5D, 5140_56_3)	0.14068735	[0.093-0.189] unit increase	Illumina [> 1000000] (imputed)	N
854	chr8	35263738	35263739	rs13280010	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	8p12	Intergenic	rs13280010-T	0.4187	4E-8	(MTAG)	0.01	[0.0065-0.0135] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
854	chr8	35312166	35312167	rs74741891	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8p12	NR	rs74741891-G	0.01045	2E-8	(SEPT11)	0.04113	NR unit decrease	Illumina [1671387] (imputed)	N
854	chr8	35314836	35314837	rs2897290	33693791	Park S	2021-03-09	J Nutr	Observational or Genetically Predicted Higher Vegetable Intake and Kidney Function Impairment: An Integrated Population-Scale Cross-Sectional Analysis and Mendelian Randomization Study.	Vegetable consumption	337,128 European ancestry individuals	NA	8p12	UNC5D	rs2897290-T	0.407	3E-8		0.011	[0.0071-0.0149] unit increase	NR [NR] (imputed)	N
855	chr8	35425196	35425197	rs2589341	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	8p12	NR	rs2589341-C	0.342884126420768	4E-9		0.0056996513	[0.0038-0.0076] unit increase	NR [NR]	N
855	chr8	35425196	35425197	rs2589341	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	8p12	NR	rs2589341-C	0.342884126420768	1E-8		0.0068691527	[0.0045-0.0092] unit increase	NR [NR]	N
855	chr8	35425196	35425197	rs2589341	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	8p12	NR	rs2589341-C	0.342884126420768	8E-9		0.008905975	[0.0059-0.0119] unit increase	NR [NR]	N
855	chr8	35425196	35425197	rs2589341	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	8p12	NR	rs2589341-C	0.342884126420768	8E-9		0.005695298	[0.0038-0.0076] unit increase	NR [NR]	N
855	chr8	35431688	35431691	rs765452361	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	8p12	UNC5D	rs765452361-CCTT	0.998	3E-6		0.6269	[0.36-0.89] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
856	chr8	35527761	35527762	rs16884213	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	8p12	NR	rs16884213-?	NR	2E-6				Affymetrix [NR]	N
856	chr8	35561860	35561861	rs78930937	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (severe respiratory symptoms vs population)	1,128 European ancestry cases, 679,531 European ancestry controls, 245 Hispanic or Latin American cases, 94,237 Hispanic or Latin American controls, 74 Black or African American cases, 22,383 Black or African American controls	NA	8p12		rs78930937-?	NR	6E-7		0.3574328	[0.22-0.5] unit decrease	Illumina [9906551] (imputed)	N
856	chr8	35561860	35561861	rs78930937	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (hospitalized covid vs population)	613 European ancestry cases, 680,416 European ancestry controls, 140 Hispanic or Latin American cases, 94,327 Hispanic or Latin American controls, 49 Black or African American cases, 22,410 Black or African American controls	NA	8p12		rs78930937-?	NR	4E-6		0.4322675	[0.25-0.62] unit decrease	Illumina [9875426] (imputed)	N
856	chr8	35561860	35561861	rs78930937	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid pneumonia vs population)	1,004 European ancestry cases, 680,354 European ancestry controls, 218 Hispanic or Latin American cases, 94,318 Hispanic or Latin American controls, 64 Black or African American cases, 22,412 Black or African American controls	NA	8p12		rs78930937-?	NR	1E-6		0.3657574	[0.22-0.51] unit decrease	Illumina [9901720] (imputed)	N
856	chr8	35604168	35604169	rs17357035	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	8p12	NR	rs17357035-A	NR	8E-6	(GEE model)	1.0025	[0.56-1.44] unit decrease	NR [NR] (imputed)	N
857	chr8	35699416	35699417	rs79505281	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Pulse pressure x alcohol consumption interaction (2df test)	91,099 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	238,053 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,447 Hispanic ancestry drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic ancestry non-drinkers	8p12	UNC5D	rs79505281-A	0.02	3E-9	(AA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
857	chr8	35706109	35706110	rs72637528	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	8p12	NR	rs72637528-G	NR	1E-7	(GEE model)	1.1324	[0.72-1.55] unit decrease	NR [NR] (imputed)	N
857	chr8	35721158	35721159	rs9642758	28754176	Wang Z	2017-07-28	Environ Health	Genome-wide gene by lead exposure interaction analysis identifies UNC5D as a candidate gene for neurodevelopment.	Mental development (prenatal lead exposure interaction)	390 Mexican children, 490 Bangladeshi children	NA	8p12	UNC5D	rs9642758-?	NR	4E-6				Illumina [552487]	N
858	chr8	35846077	35846078	rs138876514	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (severe respiratory symptoms vs population)	1,128 European ancestry cases, 679,531 European ancestry controls, 245 Hispanic or Latin American cases, 94,237 Hispanic or Latin American controls, 74 Black or African American cases, 22,383 Black or African American controls	NA	8p12		rs138876514-?	NR	6E-6		0.2876342	[0.16-0.41] unit decrease	Illumina [9906551] (imputed)	N
858	chr8	35846077	35846078	rs138876514	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (hospitalized covid vs population)	613 European ancestry cases, 680,416 European ancestry controls, 140 Hispanic or Latin American cases, 94,327 Hispanic or Latin American controls, 49 Black or African American cases, 22,410 Black or African American controls	NA	8p12		rs138876514-?	NR	3E-6		0.3875122	[0.23-0.55] unit decrease	Illumina [9875426] (imputed)	N
858	chr8	35846077	35846078	rs138876514	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid respiratory support vs population)	495 European ancestry cases, 680,440 European ancestry controls, 102 Hispanic or Latin American cases, 94,330 Hispanic or Latin American controls, 39 Black or African American cases, 22,410 Black or African American controls	NA	8p12		rs138876514-?	NR	9E-6		0.4082299	[0.23-0.59] unit decrease	Illumina [9842460] (imputed)	N
858	chr8	35863937	35863938	rs142214173	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	8p12	NR	rs142214173-G	NR	1E-8	(GEE model)	1.2016	[0.79-1.62] unit decrease	NR [NR] (imputed)	N
858	chr8	35880031	35880032	rs183529902	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	8p12	Intergenic	rs183529902-C	0.998	5E-6	(AA)	0.26	unit increase	Illumina [NR] (imputed)	N
859	chr8	35926401	35926402	rs6992753	31213470	Moon JY	2019-06-18	Diabetes Care	A Genome-Wide Association Study Identifies Blood Disorder-Related Variants Influencing Hemoglobin A1c With Implications for Glycemic Status in U.S. Hispanics/Latinos.	Glycated hemoglobin levels	9,636 Hispanic/Latino individuals	4,777 Hispanic/Latino individuals	8p12	UNC5D	rs6992753-A	0.016	1E-6		0.111	[0.072-0.15] % increase	Illumina [11510031] (imputed)	N
859	chr8	35947181	35947182	rs79724918	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (severe respiratory symptoms vs population)	1,128 European ancestry cases, 679,531 European ancestry controls, 245 Hispanic or Latin American cases, 94,237 Hispanic or Latin American controls, 74 Black or African American cases, 22,383 Black or African American controls	NA	8p12		rs79724918-?	NR	1E-6		0.3079109	[0.19-0.43] unit increase	Illumina [9906551] (imputed)	N
859	chr8	35947181	35947182	rs79724918	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (hospitalized covid vs population)	613 European ancestry cases, 680,416 European ancestry controls, 140 Hispanic or Latin American cases, 94,327 Hispanic or Latin American controls, 49 Black or African American cases, 22,410 Black or African American controls	NA	8p12		rs79724918-?	NR	2E-6		0.3927137	[0.23-0.55] unit increase	Illumina [9875426] (imputed)	N
859	chr8	35947181	35947182	rs79724918	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid respiratory support vs population)	495 European ancestry cases, 680,440 European ancestry controls, 102 Hispanic or Latin American cases, 94,330 Hispanic or Latin American controls, 39 Black or African American cases, 22,410 Black or African American controls	NA	8p12		rs79724918-?	NR	4E-6		0.4232717	[0.24-0.6] unit increase	Illumina [9842460] (imputed)	N
859	chr8	36033984	36033985	rs2702468	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure in major depressive disorder-negative individuals	10,701 European ancestry cases, 39,677 European ancestry controls	NA	8p12	NR	rs2702468-C	0.00153272	2E-7		1.48	[1.33-1.63]	Affymetrix [7791636] (imputed)	N
860	chr8	36045047	36045048	rs138297249	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	8p12	NR	rs138297249-G	NR	5E-7	(GEE model)	1.128	[0.69-1.57] unit decrease	NR [NR] (imputed)	N
861	chr8	36202945	36202946	rs192534763	27494321	Jones SE	2016-08-05	PLoS Genet	Genome-Wide Association Analyses in 128,266 Individuals Identifies New Morningness and Sleep Duration Loci.	Morning vs. evening chronotype	114,765 British individuals	NA	8p12	UNC5D	rs192534763-T	0.99	2E-8		1.25	[1.14-1.36]	NR [16760980] (imputed)	N
861	chr8	36218923	36218924	rs79150654	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (hospitalized covid vs population)	613 European ancestry cases, 680,416 European ancestry controls, 140 Hispanic or Latin American cases, 94,327 Hispanic or Latin American controls, 49 Black or African American cases, 22,410 Black or African American controls	NA	8p12		rs79150654-?	NR	1E-5		0.3338458	[0.19-0.48] unit decrease	Illumina [9875426] (imputed)	N
861	chr8	36294500	36294501	rs16885018	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	8p12	NR	rs16885018-?	NR	3E-8				Affymetrix [NR]	N
862	chr8	36308432	36308433	rs113687142	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	8p12	NR	rs113687142-T	0.0149	2E-6	(EA)	0.1493	[0.089-0.21] unit decrease	Illumina [~ 11800000] (imputed)	N
862	chr8	36329112	36329113	rs187649623	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	8p12	NR	rs187649623-T	NR	4E-7	(GEE model)	1.3596	[0.83-1.89] unit decrease	NR [NR] (imputed)	N
863	chr8	36459453	36459454	rs7814403	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	8p12	FKSG2	rs7814403-G	0.462	3E-7	(Diet carbohydrate )	0.03	[NR] g/d increase	Illumina [899892]	N
863	chr8	36459453	36459454	rs7814403	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	8p12	FKSG2	rs7814403-G	0.462	2E-6	(Energy intake )	0.03	[NR] kcal/d increase	Illumina [899892]	N
863	chr8	36471393	36471394	rs151108108	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	8p12	NR	rs151108108-T	NR	2E-6	(GEE model)	1.2808	[0.75-1.81] unit decrease	NR [NR] (imputed)	N
864	chr8	36630228	36630229	rs1981322	30172743	Liang X	2018-08-30	Bone	Assessing the genetic correlations between early growth parameters and bone mineral density: A polygenic risk score analysis.	Femoral neck bone mineral density	2,286 European ancestry individuals	NA	8p11.23	KCNU1	rs1981322-?	NR	8E-7				Affymetrix [753382]	N
864	chr8	36663517	36663518	rs11775036	33002439	Jin G	2020-10-01	Lancet Oncol	Genetic risk, incident gastric cancer, and healthy lifestyle: a meta-analysis of genome-wide association studies and prospective cohort study.	Gastric cancer	10,254 Han Chinese ancestry cases, 10,914 Han Chinese ancestry controls	NA	8p11.23	NR	rs11775036-T	0.2	7E-6		0.88	NR	Affymetrix, Illumina [6957974] (imputed)	N
865	chr8	36770378	36770379	rs149846728	30306274	Shah RL	2018-10-10	Hum Genet	Genome-wide association studies for corneal and refractive astigmatism in UK Biobank demonstrate a shared role for myopia susceptibility loci.	Corneal astigmatism	Up to 86,335 European ancestry individuals		8p11.23	KCNU1	rs149846728-G	0.949	5E-6		0.03	[0.018-0.042] dioptres increase	NR [5901671] (imputed)	N
865	chr8	36777790	36777791	rs10097946	28334935	Raffield LM	2017-05-15	Hum Mol Genet	Genome-wide association study of iron traits and relation to diabetes in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL): potential genomic intersection of iron and glucose regulation?	Iron status biomarkers (transferrin saturation)	12,589 Hispanic/Latino individuals	NA	8p11.23	KCNU1	rs10097946-C	NR	4E-7		0.489	[0.3-0.68] unit decrease	Illumina [27700000] (imputed)	N
865	chr8	36823816	36823817	rs11987974	30289880	Qi G	2018-10-05	PLoS Genet	Heritability informed power optimization (HIPO) leads to enhanced detection of genetic associations across multiple traits.	Lipid traits (pleiotropy) (HIPO component 1)	188,577 European ancestry individuals	NA	8p11.23	KCNU1	rs11987974-?	NR	4E-9				NR [1800000]	N
865	chr8	36825079	36825080	rs10090367	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body fat percentage and triglycerides (pairwise)	268,505 European ancestry individuals, 10,072 East Asian, South Asian and African American ancestry individuals	NA	8p11.23	KCNU1	rs10090367-A	0.8678	3E-8				Affymetrix, Illumina [2331072] (imputed)	N
865	chr8	36830590	36830591	rs7387647	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	8p11.23		rs7387647-C	0.604	4E-8		0.007	[0.005-0.009] unit increase	NR [NR] (imputed)	N
866	chr8	36832309	36832310	rs56687477	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	8p11.23	KCNU1, ZNF703	rs56687477-A	0.323	2E-10		1.05	[1.03-1.06]	Affymetrix, Illumina [11800000] (imputed)	N
866	chr8	36842055	36842055	rs146992477	29855537	Hirata T	2018-05-31	Sci Rep	Japanese GWAS identifies variants for bust-size, dysmenorrhea, and menstrual fever that are eQTLs for relevant protein-coding or long non-coding RNAs.	Breast size	5,609 Japanese ancestry female individuals	NA	8p11.23	KCNU1	rs146992477-TTCTTTCTTTC	0.381	6E-9		0.158	[0.11-0.21] unit decrease	Affymetrix [536506]	N
866	chr8	36846108	36846109	rs7816345	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	8p11.23	AC090453.1	rs7816345-T	0.1682	6E-24		0.0255	[0.021-0.03] unit increase	Affymetrix [18391927] (imputed)	N
866	chr8	36846108	36846109	rs7816345	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	8p11.23	AC090453.1	rs7816345-T	0.167448	1E-9		0.018156493	[0.012-0.024] unit increase	Affymetrix [93095623] (imputed)	N
866	chr8	36846108	36846109	rs7816345	25342443	Lindstrom S	2014-10-24	Nat Commun	Genome-wide association study identifies multiple loci associated with both mammographic density and breast cancer risk.	Percent mammographic density	7,916 European ancestry individuals	343 European ancestry individuals, 1,472 Old Order Amish individuals, 8,564 individuals	8p11.23	intergenic	rs7816345-T	0.18	5E-8		0.08	[0.041-0.119] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
866	chr8	36846108	36846109	rs7816345	25342443	Lindstrom S	2014-10-24	Nat Commun	Genome-wide association study identifies multiple loci associated with both mammographic density and breast cancer risk.	Mammographic density (non-dense area)	7,600 European ancestry individuals	343 European ancestry individuals, 1,472 Old Order Amish individuals, 8,564 individuals	8p11.23	intergenic	rs7816345-T	0.18	2E-23		0.24	[0.18-0.30] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
866	chr8	36846108	36846109	rs7816345	22747683	Eriksson N	2012-06-30	BMC Med Genet	Genetic variants associated with breast size also influence breast cancer risk.	Breast size	16,175 European ancestry female individuals	NA	8p11.23	KCNU1, ZNF703, MRPS7P1	rs7816345-T	0.194	2E-14		0.151	[0.11-0.19] cup size decrease	Illumina [7422970] (imputed)	N
866	chr8	36846434	36846435	rs75772194	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	8p11.23		rs75772194-G	NR	2E-15		0.0591	[0.045-0.074] unit increase	Affymetrix, Illumina [25845091] (imputed)	N
866	chr8	36847114	36847115	rs10110651	29855537	Hirata T	2018-05-31	Sci Rep	Japanese GWAS identifies variants for bust-size, dysmenorrhea, and menstrual fever that are eQTLs for relevant protein-coding or long non-coding RNAs.	Breast size	5,609 Japanese ancestry female individuals	NA	8p11.23	KCNU1, MRPS7P1, ZNF703	rs10110651-?	0.311	1E-8				Affymetrix [536506]	N
866	chr8	36847114	36847115	rs10110651	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Breast size	33,790 European ancestry individuals	NA	8p11.23	KCNU1, ZNF703	rs10110651-?	NR	7E-31		0.177	[0.147-0.207] unit increase	Illumina [12039487] (imputed)	N
866	chr8	36847708	36847709	rs10086016	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Breast cancer	10,682 White British ancestry cases, 138,504 White British ancestry controls	NA	8p11.23		rs10086016-?	NR	1E-8		0.893158	[0.85-0.93]	NR [682398]	N
866	chr8	36847708	36847709	rs10086016	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	8p11.23	NR	rs10086016-T	0.833877	8E-11		0.00738878	[0.0052-0.0096] unit increase	Affymetrix [16582909] (imputed)	N
866	chr8	36847708	36847709	rs10086016	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	8p11.23	NR	rs10086016-T	0.833877	2E-8		0.00726699	[0.0048-0.0097] unit increase	Affymetrix [16582965] (imputed)	N
866	chr8	36847708	36847709	rs10086016	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	8p11.23	NR	rs10086016-C	0.167788	5E-11		0.0587636	[0.041-0.077] unit increase	Affymetrix [17914406] (imputed)	N
866	chr8	36849945	36849946	rs4286946	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	8p11.23	NR	rs4286946-G	0.1739	9E-22	(EA)	0.0799	[0.064-0.096] unit decrease	Illumina [~ 11800000] (imputed)	N
866	chr8	36853212	36853213	rs10096213	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Breast cancer	17,881 European ancestry cases, 410,350 European ancestry controls	NA	8p11.23		rs10096213-C	NR	3E-9		1.094	NR	Affymetrix [7846216] (imputed)	N
866	chr8	36853212	36853213	rs10096213	29855537	Hirata T	2018-05-31	Sci Rep	Japanese GWAS identifies variants for bust-size, dysmenorrhea, and menstrual fever that are eQTLs for relevant protein-coding or long non-coding RNAs.	Breast size	5,609 Japanese ancestry female individuals	NA	8p11.23	NR	rs10096213-T	0.3805	6E-9		0.1581	[0.1-0.21] unit decrease	Affymetrix [536506]	N
866	chr8	36853216	36853217	rs10095380	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	8p11.23	NR	rs10095380-G	0.834373	8E-13		0.0118764	[0.0086-0.0151] unit increase	Affymetrix [16585854] (imputed)	N
866	chr8	36853216	36853217	rs10095380	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	8p11.23	NR	rs10095380-G	0.834373	4E-7		0.0100106	[0.0063-0.0138] unit increase	Affymetrix [16585866] (imputed)	N
866	chr8	36854710	36854711	rs10092900	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Breast cancer	17,389 European ancestry cases, 240,341 European ancestry controls, 6,325 East Asian ancestry cases, 73,225 East Asian ancestry controls	NA	8p11.23		rs10092900-G	NR	2E-17		0.1058	[0.081-0.13] unit decrease	Affymetrix, Illumina [25794640] (imputed)	N
866	chr8	36858482	36858483	rs13365225	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	8p11.23	NR	rs13365225-G	0.2605	2E-12		0.0327	[0.024-0.042] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
866	chr8	36858482	36858483	rs13365225	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	8p11.23		rs13365225-A	NR	1E-23		1.07	[1.06-1.09]	Affymetrix, Illumina [NR] (imputed)	N
866	chr8	36858482	36858483	rs13365225	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	8p11.23	intergenic	rs13365225-A	0.82	1E-20	(EA)	1.098901	[1.08-1.12] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
866	chr8	36858482	36858483	rs13365225	29058716	Milne RL	2017-10-23	Nat Genet	Identification of ten variants associated with risk of estrogen-receptor-negative breast cancer.	Breast cancer (estrogen-receptor negative)	14,135 European ancestry cases, 58,126 European ancestry controls	7,333 European ancestry cases, 42,468 European ancestry controls	8p11.23	NR	rs13365225-A	0.82	1E-10		1.1111112	[1.06-1.16] (Oncoarray)	Illumina [~ 11500000] (imputed)	N
866	chr8	36858482	36858483	rs13365225	27117709	Couch FJ	2016-04-27	Nat Commun	Identification of four novel susceptibility loci for oestrogen receptor negative breast cancer.	Breast cancer	4,939 European ancestry estrogen receptor-negative cases, 14,352 European ancestry controls	7,333 European ancestry estrogen receptor-negative cases, 7,797 European ancestry BRCA1 mutation carrier cases, 7,455  European ancestry BRCA1 mutation carrier controls, 42,468 European ancestry controls	8p11.23	NR	rs13365225-?	0.81	7E-6		1.0416667	[0.99-1.1] (BRCA1 carriers)	Illumina [10909381] (imputed)	N
866	chr8	36858482	36858483	rs13365225	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	15,748 European ancestry cases, 18,084 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls	8p11.23	Intergenic	rs13365225-A	0.83	1E-8		1.0526316	[1.02-1.08]	Affymetrix, Illumina [~ 11600000] (imputed)	N
866	chr8	36859185	36859186	rs12681990	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Triglycerides	429,011 European ancestry individuals	NA	8p11.23		rs12681990-T	0.84	1E-6		0.012	mmol/L decrease	NR [NR] (imputed)	N
866	chr8	36859185	36859186	rs12681990	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Sex hormone-binding globulin levels	389,354 European ancestry individuals	NA	8p11.23		rs12681990-T	0.84	3E-6		0.013	nmol/L increase	NR [NR] (imputed)	N
866	chr8	36859185	36859186	rs12681990	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	8p11.23		rs12681990-T	0.84	3E-9				NR [NR] (imputed)	N
866	chr8	36859185	36859186	rs12681990	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	8p11.23		rs12681990-T	0.84	5E-9		0.012	% increase	NR [NR] (imputed)	N
866	chr8	36859185	36859186	rs12681990	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	8p11.23	KCNU1	rs12681990-C	0.16372964194065	4E-11		0.0634	[0.045-0.082] unit increase	NR [5035015] (imputed)	N
866	chr8	36859185	36859186	rs12681990	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	8p11.23	KCNU1	rs12681990-C	0.15	3E-9		1.05	[1.04-1.07]	Affymetrix, Illumina [NR] (imputed)	N
866	chr8	36941541	36941542	rs4739466	21254220	Jiang Y	2011-02-01	Genet Epidemiol	Propensity score-based nonparametric test revealing genetic variants underlying bipolar disorder.	Bipolar disorder	1,868 European ancestry cases, 2,938 European ancestry controls	NA	8p11.23	NR	rs4739466-?	NR	4E-6	(recessive)			Affymetrix [NR]	N
866	chr8	36951913	36951914	rs2407103	21901158	Irvin MR	2011-08-25	PLoS One	Genome-wide detection of allele specific copy number variation associated with insulin resistance in African Americans from the HyperGEN study.	Insulin resistance/response	1,040 African American individuals	NA	8p11.23	KCNU1	rs2407103-C	0.09	2E-6	(Insulin)	15.0	[9.00 - 23.00] % increase	Affymetrix [872243]	N
867	chr8	36963770	36963771	rs113167076	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	8p11.23	NR	rs113167076-A	0.0228	9E-7	(EA)	0.1213	[0.073-0.17] unit decrease	Illumina [~ 11800000] (imputed)	N
867	chr8	36982677	36982678	rs10101752	28334935	Raffield LM	2017-05-15	Hum Mol Genet	Genome-wide association study of iron traits and relation to diabetes in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL): potential genomic intersection of iron and glucose regulation?	Iron status biomarkers (transferrin saturation)	12,589 Hispanic/Latino individuals	NA	8p11.23	MIR1268A	rs10101752-G	NR	2E-7		0.428	[0.27-0.59] unit decrease	Illumina [27700000] (imputed)	N
868	chr8	37096058	37096059	rs1015003	23534349	Jeff JM	2013-03-28	Ann Hum Genet	Generalization of variants identified by genome-wide association studies for electrocardiographic traits in African Americans.	Heart rate	455 African American individuals	NA	8p11.23	intergenic	rs1015003-G		1E-6		3.94	[NR] ms increase	Illumina [> 930000]	N
868	chr8	37134188	37134189	rs188420713	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	8p11.23	Intergenic	rs188420713-T	NR	2E-10	(between families)	6.328	unit increase	Affymetrix [up to 15107142] (imputed)	N
868	chr8	37145441	37145442	rs183298717	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-6 levels	8,189 Finnish ancestry individuals	NA	8p11.23	NR	rs183298717-C	NR	5E-6		0.5862	[0.34-0.83] SD units increase	NR [10700000] (imputed)	N
869	chr8	37255861	37255862	rs2843809	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	8p11.23	Intergenic	rs2843809-A	0.8216	6E-9	(MTAG)	0.0126	[0.0083-0.0169] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
869	chr8	37266980	37266981	rs2843800	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	8p11.23	Intergenic	rs2843800-T	0.823	1E-9	(MTAG)	0.0143	[0.0098-0.0188] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
869	chr8	37302603	37302604	rs189539059	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-6 levels	8,189 Finnish ancestry individuals	NA	8p11.23	NR	rs189539059-G	NR	9E-6		0.5662	[0.31-0.82] SD units increase	NR [10700000] (imputed)	N
869	chr8	37309526	37309527	rs28409621	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	8p11.23	NR	rs28409621-?	NR	1E-43				Affymetrix [NR]	N
870	chr8	37375017	37375018	rs145785063	33574277	Kawai Y	2021-02-11	NPJ Genom Med	Mapping of susceptible variants for cold medicine-related Stevens-Johnson syndrome by whole-genome resequencing.	Cold medicine-related Stevens-Johnson syndrome/toxic epidermal necrolysis (SJS/TEN) with severe ocular complications	133 Japanese ancestry cases, 418 Japanese ancestry controls	NA	8p11.23		rs145785063-C	0.1015	1E-7		4.384		Illumina [7608150]	N
870	chr8	37375970	37375970	rs149462799	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	8p11.23		rs149462799-CTG	NR	4E-9		0.0142	[0.0095-0.0189] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
870	chr8	37376913	37376914	rs73675825	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	8p11.23		rs73675825-?	NR	8E-12				NR [~ 8900000] (imputed)	N
870	chr8	37378148	37378149	rs76274733	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Endometriosis (MTAG)	645 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	8p11.23	Intergenic	rs76274733-?		7E-6		1.09	[1.05-1.13]	Illumina [7645193] (imputed)	N
870	chr8	37391202	37391203	rs4739515	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	8p11.23	ZNF703	rs4739515-G	0.538	2E-11		1.05	[1.03-1.06]	Affymetrix, Illumina [11800000] (imputed)	N
870	chr8	37391202	37391203	rs4739515	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	8p11.23	NR	rs4739515-C	0.040641999999999956	2E-8		0.0123957	[0.0082-0.0166] unit increase	Affymetrix [16582909] (imputed)	N
870	chr8	37391202	37391203	rs4739515	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	8p11.23	NR	rs4739515-C	0.040641999999999956	2E-6		0.011901	[0.0072-0.0166] unit increase	Affymetrix [16582965] (imputed)	N
870	chr8	37397802	37397803	rs12680217	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	8p11.23		rs12680217-C	NR	2E-8		0.0162	[0.011-0.022] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
870	chr8	37397802	37397803	rs12680217	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	8p11.23		rs12680217-C	NR	2E-8		0.019	[0.012-0.026] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
870	chr8	37397802	37397803	rs12680217	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	8p11.23	NR	rs12680217-C	0.301	2E-8		0.0397	[0.026-0.054] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
870	chr8	37402247	37402248	rs113266765	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	8p11.23	ZNF703	rs113266765-C	0.970205	1E-8		0.0334973	[0.022-0.045] unit increase	Affymetrix [NR] (imputed)	N
870	chr8	37404477	37404478	rs1467846	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	8p11.23	NR	rs1467846-A	NR	4E-6	(male)	0.1765	[0.1-0.25] unit decrease	Illumina [11133794] (imputed)	N
870	chr8	37430332	37430333	rs756193373	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	8p11.23	RP11-150O12.5	rs756193373-T	0.0013	1E-6		2.4675	[1.47-3.47] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
870	chr8	37478591	37478592	rs79348019	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8p11.23	NR	rs79348019-A	0.01045	8E-10	(HSPA8)	1.658	NR unit increase	Illumina [1671387] (imputed)	N
870	chr8	37478591	37478592	rs79348019	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8p11.23	NR	rs79348019-A	0.01045	3E-8	(ENO1)	1.838	NR unit increase	Illumina [1671387] (imputed)	N
870	chr8	37478591	37478592	rs79348019	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8p11.23	NR	rs79348019-A	0.01045	2E-9	(KATNAL2)	0.05855	NR unit increase	Illumina [1671387] (imputed)	N
870	chr8	37478591	37478592	rs79348019	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8p11.23	NR	rs79348019-A	0.01045	2E-10	(ALDOA)	0.4515	NR unit increase	Illumina [1671387] (imputed)	N
870	chr8	37478591	37478592	rs79348019	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8p11.23	NR	rs79348019-A	0.01045	1E-8	(GMFB)	0.009376	NR unit increase	Illumina [1671387] (imputed)	N
871	chr8	37527671	37527671	rs34766442	26379185	Garcia-Etxebarria K	2015-09-17	PLoS One	No Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity.	Mild influenza (H1N1) infection	107 European ancestry mild cases, 549 European ancestry population controls	NA	8p11.23	ZNF703, KCNU1	rs34766442-?	0.0	1E-9				Affymetrix [547296]	N
871	chr8	37532983	37532984	rs11782259	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	8p11.23	NR	rs11782259-A	0.910616	1E-10		0.0307852	[0.021-0.04] unit increase	Affymetrix [16580851] (imputed)	N
871	chr8	37549649	37549651	rs1464882333	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8p11.23	NR	rs1464882333-T	0.01045	1E-11	(S100A9)	0.2922	NR unit decrease	Illumina [1671387] (imputed)	N
872	chr8	37639270	37639271	rs11987971	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8p11.23	NR	rs11987971-A	0.02265	5E-9	(ABAT)	1.628	NR unit increase	Illumina [1671387] (imputed)	N
872	chr8	37648691	37648692	rs6985477	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	8p11.23		rs6985477-A	0.18	1E-9		6.12	z score increase	Affymetrix [9061022] (imputed)	N
872	chr8	37648691	37648692	rs6985477	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	8p11.23	NR	rs6985477-A	0.1923	5E-12				NR [9056863] (imputed)	N
872	chr8	37649260	37649261	rs7840232	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	8p11.23		rs7840232-C	0.19	2E-23		9.99	z score increase	Affymetrix [9061022] (imputed)	N
872	chr8	37650177	37650178	rs72641952	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	8p11.23		rs72641952-A	0.18	8E-13		7.16	z score increase	Affymetrix [9061022] (imputed)	N
872	chr8	37650177	37650178	rs72641952	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	8p11.23	NR	rs72641952-A	0.1921	6E-12				NR [9056863] (imputed)	N
872	chr8	37652758	37652759	rs3813522	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8p11.23	NR	rs3813522-C	0.254221	7E-10				Affymetrix, Illumina [24653286] (imputed)	N
872	chr8	37657525	37657526	rs915650	26121980	Chauhan L	2015-06-30	BMC Genomics	Genome-wide association analysis identified splicing single nucleotide polymorphism in CFLAR predictive of triptolide chemo-sensitivity.	Triptolide cytotoxicity	55 European ancestry lymphoblastoid cell lines	NA	8p11.23	intergenic	rs915650-?	NR	3E-6		0.59	unit decrease	Affymetrix, Illumina, Perlegen [at least 1978803] (imputed)	N
872	chr8	37669353	37669354	rs10089977	33232274	Mohammadnejad A	2020-11-24	Aging (Albany NY)	Generalized correlation coefficient for genome-wide association analysis of cognitive ability in twins.	Cognitive function (mixed linear model)	900 Danish ancestry dizygotic twins, 272 Danish ancestry monozygotic twins	NA	8p11.23	NR	rs10089977-?	NR	7E-6		2.4104	[1.36-3.46] unit increase	Illumina [5779266] (imputed)	N
872	chr8	37669353	37669354	rs10089977	33232274	Mohammadnejad A	2020-11-24	Aging (Albany NY)	Generalized correlation coefficient for genome-wide association analysis of cognitive ability in twins.	Cognitive function (kinship model)	900 Danish ancestry dizygotic twins, 272 Danish ancestry monozygotic twins	NA	8p11.23	NR	rs10089977-?	NR	6E-6		2.4104	[1.36-3.46] unit increase	Illumina [5779266] (imputed)	N
872	chr8	37681425	37681426	rs12676965	24144296	Cheng CY	2013-08-08	Am J Hum Genet	Nine loci for ocular axial length identified through genome-wide association studies, including shared loci with refractive error.	Axial length	12,531 European ancestry individuals	8,216 Asian ancestry individuals	8p11.23	GPR124, RAB11FIP1, PROSC, ERLIN2, BRF2	rs12676965-T	0.8224	3E-6		0.062	[0.036-0.088] unit increase	Illumina [2500000] (imputed)	N
872	chr8	37686748	37686749	rs6468442	19448619	Stolk L	2009-05-15	Nat Genet	Loci at chromosomes 13, 19 and 20 influence age at natural menopause.	Menopause (age at onset)	2,979 European ancestry female individuals	2,560 European ancestry female individuals	8p11.23	NR	rs6468442-?	NR	3E-7		0.39	[0.24-0.54] years decrease	Illumina [315418]	N
872	chr8	37690917	37690918	rs743398	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	8p11.23	NR	rs743398-G	0.451523	1E-8		0.0181511	[0.012-0.024] unit decrease	NR [19129689] (imputed)	N
873	chr8	37755637	37755638	rs71515732	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Chickenpox	107,769 European ancestry cases, 15,982 European ancestry controls	NA	8p11.23	NR	rs71515732-?	NR	7E-6		0.1951	[0.11-0.28] unit decrease	Illumina [at least 560000] (imputed)	N
874	chr8	37884309	37884310	rs28797500	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Age at menopause	approximately 143,000 European ancestry individuals	NA	8p11.23		rs28797500-?	NR	2E-56				NR [~ 8900000] (imputed)	N
874	chr8	37893516	37893517	rs28807105	29773799	Horikoshi M	2018-05-17	Nat Commun	Elucidating the genetic architecture of reproductive ageing in the Japanese population.	Menopause (age at onset)	43,861 Japanese ancestry women	32,545 European ancestry women	8p11.23	EIF4EBP1	rs28807105-G	0.3	2E-8	(japanese)	0.16	[0.1-0.22] year increase	Illumina [at least 532488] (imputed)	N
874	chr8	37968306	37968307	rs149680046	33592630	Herrera-Rivero M	2021-02-16	Thromb Haemost	Single- and Multimarker Genome-Wide Scans Evidence Novel Genetic Risk Modifiers for Venous Thromboembolism.	Venous thromboembolism	964 European ancestry cases, 899 European ancestry controls	NA	8p11.23	ASH2L	rs149680046-T	NR	3E-11		0.05595	[0.02385-0.1312]	Illumina [484621]	N
874	chr8	37977731	37977732	rs2517388	23307926	Perry JR	2013-01-09	Hum Mol Genet	A genome-wide association study of early menopause and the combined impact of identified variants.	Menopause (age at onset)	3,493 European ancestry cases, 13,598 European ancestry controls	3,412 European ancestry cases, 4,928 European ancestry controls	8p11.23	NR	rs2517388-T	0.8234	1E-7		0.2146	[0.13-0.29] years increase	NR [NR]	N
874	chr8	37977731	37977732	rs2517388	22267201	Stolk L	2012-01-22	Nat Genet	Meta-analyses identify 13 loci associated with age at menopause and highlight DNA repair and immune pathways.	Menopause (age at onset)	38,968 European ancestry female individuals	Up to 14,435 European ancestry female individuals	8p11.23	ASH2L	rs2517388-G	0.174	9E-15		0.262	[0.2-0.33] years increase	Affymetrix, Illumina [2551160] (imputed)	N
874	chr8	37980586	37980587	rs2720044	26414677	Day FR	2015-11-01	Nat Genet	Large-scale genomic analyses link reproductive aging to hypothalamic signaling, breast cancer susceptibility and BRCA1-mediated DNA repair.	Menopause (age at onset)	up to 69,626 European ancestry women	NA	8p11.23	STAR	rs2720044-A	0.84	7E-22		0.29	[0.23-0.35] years decrease	Affymetrix, Illumina [~ 2600000] (imputed)	N
874	chr8	38004424	38004425	rs16887217	24124408	Hong KW	2013-09-30	Genomics Inform	Genome-wide association study of orthostatic hypotension and supine-standing blood pressure changes in two korean populations.	Orthostatic hypotension	667 Korean ancestry cases,  5,761 Korean ancestry controls	NA	8p11.23	STAR	rs16887217-C	0.105	4E-6	(Delta DBP)	1.16	[NR] mmHg increase	Affymetrix [333651]	N
875	chr8	38021010	38021010	rs5891007	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	8p11.23	intergenic	rs5891007-?	NR	1E-7	(Chinese)	1.1086475	[1.07-1.15]	Affymetrix, Illumina [up to 5107227] (imputed)	N
875	chr8	38025510	38025511	rs145151767	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	8p11.23		rs145151767-?	NR	4E-14				NR [~ 8900000] (imputed)	N
875	chr8	38031344	38031345	rs16887244	22037555	Shi Y	2011-10-30	Nat Genet	Common variants on 8p12 and 1q24.2 confer risk of schizophrenia.	Schizophrenia	3,750 Han Chinese ancestry cases, 6,468 Han Chinese ancestry controls	4,383 Han Chinese ancestry cases, 4,539 Han Chinese ancestry controls	8p11.23	LSM1, WHSC1L1	rs16887244-?	0.683	1E-10		1.19	[1.14-1.27]	Affymetrix [546561]	N
875	chr8	38095661	38095662	rs2306899	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	8p11.23	NR	rs2306899-T	0.24	2E-12		0.015	[0.011-0.019] unit decrease	NR [NR]	N
875	chr8	38095661	38095662	rs2306899	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	8p11.23		rs2306899-T	0.2403	9E-21		0.23238792	[0.18-0.28] mmHg increase	Affymetrix, Illumina [242865] (imputed)	N
875	chr8	38095661	38095662	rs2306899	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	8p11.23		rs2306899-T	0.2404	8E-14		0.12936419	[0.093-0.165] mmHg increase	Affymetrix, Illumina [242866] (imputed)	N
875	chr8	38095661	38095662	rs2306899	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Hypertension	810,865 European ancestry individuals	354,096 European ancestry individuals	8p11.23		rs2306899-T	0.2419	6E-13		7.20766	z score increase	Affymetrix, Illumina [239843] (imputed)	N
875	chr8	38095661	38095662	rs2306899	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	8p11.23		rs2306899-T	0.2405	8E-12		0.11036871	[0.079-0.142] mmHg increase	Affymetrix, Illumina [242866] (imputed)	N
875	chr8	38120720	38120721	rs9198	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8p11.23	NR	rs9198-C	0.253773	3E-12				Affymetrix, Illumina [23472807] (imputed)	N
875	chr8	38130024	38130025	rs1906672	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	8p11.23	WHSC1L1	rs1906672-A	0.2303	1E-20		0.2715	[0.21-0.33] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
875	chr8	38135411	38135412	rs7845911	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs Tourette's syndrome and other tic disorders (ordinary least squares (OLS))	40,675 schizophrenia cases, 4,819 Tourette's syndrome cases	NA	8p11.23		rs7845911-?	NR	8E-9		0.0213	NR unit decrease	NR [4502103] (imputed)	N
875	chr8	38137529	38137530	rs12674515	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	8p11.23		rs12674515-?	NR	2E-23				NR [~ 8900000] (imputed)	N
876	chr8	38193010	38193011	rs57011135	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	8p11.23		rs57011135-C	NR	5E-14		0.0154	[0.011-0.019] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
876	chr8	38206241	38206242	rs11785041	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	8p11.23	WHSC1L1	rs11785041-T	0.2229	3E-14		0.2385	[0.18-0.3] mmHg increase	Affymetrix [NR] (imputed)	N
876	chr8	38209128	38209129	rs10156310	29483656	Pardinas AF	2018-02-26	Nat Genet	Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.	Schizophrenia	40,675 European ancestry cases, 64,643 European ancestry controls	1,651 European ancestry cases, 4,111 cases, 142,717 European ancestry controls, 11,507 controls	8p11.23	ASH2L, BAG4, DDHD2, FGFR1, LETM2, LSM1, PPAPDC1B, STAR, WHSC1L1	rs10156310-?	NR	6E-10		1.076	[1.05-1.1]	Illumina [8000000] (imputed)	N
876	chr8	38230451	38230452	rs138062971	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	8p11.23	NR	rs138062971-C	0.246804	8E-25		0.023197	[0.019-0.028] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
876	chr8	38232846	38232846	rs144443116	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	8p11.23	WHSC1L1	rs144443116-TA	0.247309	2E-23		0.025540743	[0.021-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
876	chr8	38243226	38243227	rs56322953	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	8p11.23	LETM2	rs56322953-A	0.2345	2E-11		0.152	[0.11-0.2] mmHg increase	Affymetrix [NR] (imputed)	N
876	chr8	38245598	38245598	rs768447718	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	8p11.23	NR	rs768447718-D	0.741362	2E-15		0.018675	[0.014-0.023] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
876	chr8	38248305	38248306	rs112537273	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	8p11.23	LETM2	rs112537273-T	NR	1E-6	(EA)	1.0675	[1.04-1.09]	Illumina [6627481] (imputed)	N
876	chr8	38248305	38248306	rs112537273	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	8p11.23	LETM2	rs112537273-T	NR	1E-12		1.081	[1.06-1.1]	Illumina [6627481] (imputed)	N
876	chr8	38248305	38248306	rs112537273	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	8p11.23	BAG4, DDHD2, LETM2, LSM1, WHSC1L1	rs112537273-T	NR	1E-11		1.077	[1.06-1.1]	Affymetrix, Illumina [up to 5107227] (imputed)	N
876	chr8	38248305	38248306	rs112537273	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	8p11.23	NR	rs112537273-T	NR	2E-7		1.07	[NR]	Illumina [7158791] (imputed)	N
876	chr8	38249200	38249201	rs12677998	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	8p11.23	WHSC1L1, LETM2, FGFR1	rs12677998-G	0.891	7E-6		1.090679		NR [9372253] (imputed)	N
876	chr8	38249932	38249932	rs746008566	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	8p11.23	LETM2	rs746008566-G	0.7712	1E-21		0.0219	[0.017-0.026] unit increase	Affymetrix [18391927] (imputed)	N
876	chr8	38249932	38249932	rs746008566	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	8p11.23	LETM2	rs746008566-GA	0.228972	8E-15		0.020794775	[0.016-0.026] unit increase	Affymetrix [93095623] (imputed)	N
876	chr8	38257295	38257295	rs776531974	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA		LETM2	rs776531974-CAA	0.246187	8E-15		0.021261908	[0.016-0.027] unit increase	Affymetrix [93095623] (imputed)	N
876	chr8	38259480	38259481	rs11986274	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls	NA	8p11.23	NR	rs11986274-?	NR	1E-8		1.08		Affymetrix, Illumina [9938587] (imputed)	N
876	chr8	38262232	38262233	rs7001340	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Bipolar disorder (MTAG)	1,450,972 European ancestry individuals	NA			rs7001340-?	NR	2E-8				NR [2625067]	N
876	chr8	38262232	38262233	rs7001340	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Schizophrenia (MTAG)	at least 33,640 European ancestry cases, at least 43,456 European ancestry controls	NA		NR	rs7001340-T	0.7624	4E-8		0.07286661	[0.047-0.099] unit increase	NR [NR]	N
876	chr8	38262232	38262233	rs7001340	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Bipolar disorder (MTAG)	at least 20,352 European ancestry cases, at least 31,358 European ancestry controls	NA		NR	rs7001340-T	0.7624	1E-8		0.07478822	[0.049-0.1] unit increase	NR [NR]	N
876	chr8	38262232	38262233	rs7001340	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA		NR	rs7001340-?	NR	2E-13		1.07412	[1.06-1.09]	Affymetrix, Illumina [12447948] (imputed)	N
876	chr8	38262493	38262498	rs144330574	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	8p11.23		rs144330574-C	NR	2E-8		0.012	[0.0079-0.0161] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
876	chr8	38269513	38269514	rs13317	28232668	Yu Y	2017-02-24	Nat Commun	Genome-wide analyses of non-syndromic cleft lip with palate identify 14 novel loci and genetic heterogeneity.	Nonsyndromic cleft lip with cleft palate	2,033 Han Chinese ancestry cases, 4,051 Han Chinese ancestry controls	1,346 Han Chinese ancestry cases, 4,542 Han Chinese ancestry controls	8p11.23	FGFR1	rs13317-A	0.66	4E-8		1.1764705	[NR]	Illumina [803202]	N
876	chr8	38272581	38272582	rs4647903	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	8p11.23		rs4647903-A	NR	8E-9		0.0138	[0.0091-0.0185] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
876	chr8	38272581	38272582	rs4647903	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	8p11.23		rs4647903-A	NR	7E-14		0.019	[0.014-0.024] unit increase	Affymetrix, Illumina [20528270] (imputed)	N
876	chr8	38272581	38272582	rs4647903	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	8p11.23	NR	rs4647903-A	NR	1E-9		0.0173	[0.012-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
876	chr8	38272581	38272582	rs4647903	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	8p11.23	NR	rs4647903-A	NR	1E-12		0.0212	[0.015-0.027] unit increase	Affymetrix [9000000] (imputed)	N
876	chr8	38272581	38272582	rs4647903	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	67,764 individuals	NA	8p11.23	NR	rs4647903-?		4E-8				NR [8377093]	N
876	chr8	38272581	38272582	rs4647903	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	8p11.23	FGFR1, LETM2	rs4647903-?		2E-9				NR [6786993] (imputed)	N
877	chr8	38281657	38281658	rs3925	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8p11.23	NR	rs3925-G	0.760458	5E-23				Affymetrix, Illumina [22063850] (imputed)	N
877	chr8	38281657	38281658	rs3925	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	8p11.23		rs3925-?	NR	3E-13				NR [~ 8900000] (imputed)	N
877	chr8	38284580	38284581	rs6984358	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Bipolar disorder (MTAG)	65,682 individuals	NA	8p11.23	NR	rs6984358-?		1E-8				NR [520857]	N
877	chr8	38290423	38290424	rs57709857	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	8p11.23	BAG4, DDHD2, FGFR1, LETM2, LSM1, PLPP5, WHSC1L1	rs57709857-?		4E-9		1.0752687	[1.05-1.1]	Affymetrix, Illumina [NR]	N
877	chr8	38292146	38292147	rs10101096	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	8p11.23	NR	rs10101096-C	NR	2E-9		0.0169	[0.011-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
877	chr8	38292146	38292147	rs10101096	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	8p11.23	NR	rs10101096-C	NR	3E-10		0.0186	[0.013-0.024] unit increase	Affymetrix [9000000] (imputed)	N
877	chr8	38295927	38295928	rs9657190	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	8p11.23	NR	rs9657190-G	0.2464	4E-12		0.001851	[0.0013-0.0024] unit increase	Affymetrix [NR] (imputed)	N
877	chr8	38299623	38299624	rs60527016	32747698	Matoba N	2020-08-03	Transl Psychiatry	Common genetic risk variants identified in the SPARK cohort support DDHD2 as a candidate risk gene for autism.	Autism spectrum disorder	4,535 European ancestry cases, 37 African ancestry cases, 83 East Asian ancestry cases, 1,567 cases, 4,535 European ancestry controls, 37 African ancestry controls, 83 East Asian ancestry controls, 1,567 controls	NA	8p11.23	NR	rs60527016-T	0.792283	5E-8		1.1904762	[1.11-1.27]	Illumina [8992756] (imputed)	N
877	chr8	38299623	38299624	rs60527016	32747698	Matoba N	2020-08-03	Transl Psychiatry	Common genetic risk variants identified in the SPARK cohort support DDHD2 as a candidate risk gene for autism.	Autism spectrum disorder	22,916 European ancestry cases, 32,504 European ancestry controls	NA	8p11.23	NR	rs60527016-T	0.792283	3E-6		1.0752687	[1.04-1.1]	Illumina [up to 8992756] (imputed)	N
877	chr8	38323764	38323765	rs62505473	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	8p11.23		rs62505473-G	0.39	3E-9		5.91	z score increase	Affymetrix [9061022] (imputed)	N
877	chr8	38323764	38323765	rs62505473	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	8p11.23	NR	rs62505473-G	0.4064	5E-9				NR [9056863] (imputed)	N
877	chr8	38323764	38323765	rs62505473	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8p11.23	FGFR1	rs62505473-C	0.59531	9E-10	(-98 ms)	0.0338455	[0.023-0.045] unit increase	Affymetrix [10000000] (imputed)	N
877	chr8	38323764	38323765	rs62505473	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8p11.23	FGFR1	rs62505473-C	0.59531	6E-9	(-92 ms)	0.031882	[0.021-0.043] unit increase	Affymetrix [10000000] (imputed)	N
877	chr8	38323764	38323765	rs62505473	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8p11.23	FGFR1	rs62505473-C	0.59531	4E-10	(-94 ms)	0.0342952	[0.023-0.045] unit increase	Affymetrix [10000000] (imputed)	N
877	chr8	38323764	38323765	rs62505473	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8p11.23	FGFR1	rs62505473-C	0.59531	3E-9	(-182 ms)	0.0328315	[0.022-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
877	chr8	38323764	38323765	rs62505473	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8p11.23	FGFR1	rs62505473-C	0.59531	3E-9	(-106 ms)	0.0322531	[0.021-0.043] unit increase	Affymetrix [10000000] (imputed)	N
877	chr8	38323764	38323765	rs62505473	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8p11.23	FGFR1	rs62505473-C	0.59531	3E-9	(-100 ms)	0.0322325	[0.021-0.043] unit increase	Affymetrix [10000000] (imputed)	N
877	chr8	38323764	38323765	rs62505473	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8p11.23	FGFR1	rs62505473-C	0.59531	3E-8	(-184 ms)	0.0306094	[0.019-0.042] unit decrease	Affymetrix [10000000] (imputed)	N
877	chr8	38323764	38323765	rs62505473	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8p11.23	FGFR1	rs62505473-C	0.59531	2E-9	(-104 ms)	0.0328929	[0.022-0.044] unit increase	Affymetrix [10000000] (imputed)	N
877	chr8	38323764	38323765	rs62505473	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8p11.23	FGFR1	rs62505473-C	0.59531	2E-8	(-188 ms)	0.0313352	[0.02-0.043] unit decrease	Affymetrix [10000000] (imputed)	N
877	chr8	38323764	38323765	rs62505473	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8p11.23	FGFR1	rs62505473-C	0.59531	2E-8	(-186 ms)	0.0311807	[0.02-0.042] unit decrease	Affymetrix [10000000] (imputed)	N
877	chr8	38323764	38323765	rs62505473	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8p11.23	FGFR1	rs62505473-C	0.59531	2E-8	(-108 ms)	0.0305005	[0.019-0.042] unit increase	Affymetrix [10000000] (imputed)	N
877	chr8	38323764	38323765	rs62505473	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8p11.23	FGFR1	rs62505473-C	0.59531	2E-10	(-96 ms)	0.0346348	[0.023-0.046] unit increase	Affymetrix [10000000] (imputed)	N
877	chr8	38323764	38323765	rs62505473	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8p11.23	FGFR1	rs62505473-C	0.59531	1E-11	(-176 ms)	0.0376108	[0.026-0.049] unit decrease	Affymetrix [10000000] (imputed)	N
877	chr8	38326045	38326046	rs3213849	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	8p11.23	NR	rs3213849-A	0.401	8E-13		0.0143	[0.01-0.018] unit increase	NR [~ 27400000] (imputed)	N
877	chr8	38328301	38328302	rs10958704	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	8p11.23	NR	rs10958704-A	0.597854	3E-11		0.0200814	[0.014-0.026] unit increase	Affymetrix [16577313] (imputed)	N
877	chr8	38328301	38328302	rs10958704	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	8p11.23		rs10958704-?	NR	5E-11				NR [~ 8900000] (imputed)	N
877	chr8	38329649	38329650	rs36061954	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	8p11.23		rs36061954-C	0.598	7E-12		0.008	[0.006-0.01] unit decrease	NR [NR] (imputed)	N
877	chr8	38329649	38329650	rs36061954	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	8p11.23	FGFR1	rs36061954-C	0.601369	4E-9		0.0119277	[0.008-0.0159] unit decrease	Affymetrix [NR] (imputed)	N
877	chr8	38329649	38329650	rs36061954	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	8p11.23	NA	rs36061954-T	0.3979	3E-13		0.0146	[0.011-0.019] unit increase	NR [~ 27400000] (imputed)	N
877	chr8	38329649	38329650	rs36061954	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	8p11.23	NA	rs36061954-T	0.3978	1E-9		0.0119	[0.0082-0.0156] unit increase	NR [~ 27400000] (imputed)	N
877	chr8	38332248	38332249	rs881299	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	8p11.23	FGFR1	rs881299-C	0.4035	3E-19		0.5828	[0.46-0.71] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
877	chr8	38332248	38332249	rs881299	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	8p11.23	NR	rs881299-T	0.5888	9E-7		0.0098	[0.0059-0.0137] unit decrease	NR [~ 27400000] (imputed)	N
877	chr8	38332317	38332318	rs881301	34542150	Gergei I	2021-09-20	Hum Mol Genet	GWAS META-analysis followed by MENDELIAN randomisation revealed potential control mechanisms for circulating ?-klotho levels.	Circulating plasma alpha-Klotho levels	4,376 European ancestry individuals	NA	8p11.23	NR	rs881301-C	0.4128	2E-8		0.119	[0.078-0.16] z score decrease	Affymetrix, Illumina [6439450] (imputed)	N
877	chr8	38332317	38332318	rs881301	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	8p11.23	NR	rs881301-T	0.587067	6E-10		0.0081257	[0.0056-0.0107] unit increase	Affymetrix [16578495] (imputed)	N
877	chr8	38332317	38332318	rs881301	30046033	van Setten J	2018-07-25	Nat Commun	PR interval genome-wide association meta-analysis identifies 50 loci associated with atrial and atrioventricular electrical activity.	PR interval	92,340 European ancestry individuals	NA	8p11.23	FGFR1	rs881301-C	0.41	5E-10		0.8	[0.56-1.04] ms increase	Affymetrix, Illumina [2712613] (imputed)	N
877	chr8	38332317	38332318	rs881301	26989097	Coleman JR	2016-03-17	Br J Psychiatry	Genome-wide association study of response to cognitive-behavioural therapy in children with anxiety disorders.	Response to cognitive-behavioural therapy in anxiety disorder	Up to 902 European ancestry cases, up to 78 cases	NA	8p11.23	WHSC1L1, LETM2, FGFR1, C8orf86	rs881301-?	0.403	4E-6	(post-treatment)			Illumina [3017604] (imputed)	N
877	chr8	38333061	38333062	rs2468964	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	8p11.23		rs2468964-T	0.38	8E-10		6.14	z score increase	Affymetrix [9061022] (imputed)	N
877	chr8	38333061	38333062	rs2468964	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	8p11.23	NR	rs2468964-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
877	chr8	38333061	38333062	rs2468964	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	8p11.23		rs2468964-?	NR	1E-9				NR [~ 8900000] (imputed)	N
877	chr8	38337263	38337264	rs4739558	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	8p11.23	FGFR1	rs4739558-A	0.399483	7E-9		0.00829517	[0.0055-0.0111] unit increase	Affymetrix [12370749]	N
877	chr8	38337263	38337264	rs4739558	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		8p11.23	FGFR1	rs4739558-A	0.399483	7E-9		0.00809748	[0.0054-0.0108] unit increase	Affymetrix [12370749]	N
877	chr8	38337263	38337264	rs4739558	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	8p11.23	NR	rs4739558-G	0.602	2E-10		0.00703559	[0.0049-0.0092] unit decrease	NR [9732723] (imputed)	N
877	chr8	38337263	38337264	rs4739558	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	8p11.23	NR	rs4739558-G	0.599	1E-9		0.00910354	[0.0062-0.012] unit increase	NR [9732723] (imputed)	N
877	chr8	38340136	38340137	rs7828172	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	8p11.23	FGFR1	rs7828172-A	0.399991	1E-8		0.0118733	[0.0077-0.016] unit decrease	NR [16516521] (imputed)	N
877	chr8	38340153	38340154	rs66504003	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	8p11.23	NR	rs66504003-C	0.4691	4E-8				NR [9056863] (imputed)	N
877	chr8	38343011	38343012	rs328301	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	8p11.23	FGFR1	rs328301-T	0.328	4E-8		1.04	[1.03-1.06]	Affymetrix, Illumina [11800000] (imputed)	N
877	chr8	38366248	38366249	rs34036147	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	8p11.22	C8orf86, FGFR1	rs34036147-T	0.688337	8E-11		0.018492	[0.013-0.024] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
877	chr8	38371939	38371940	rs11993596	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs none or mild)	136 Finnish ancestry severe erosion cases, 1011 Finnish ancestry mild or no erosion controls	NA	8p11.22	C8orf86, FGFR1	rs11993596-?	NR	5E-6				Illumina [NR] (imputed)	N
877	chr8	38371939	38371940	rs11993596	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs non-severe)	86 Finnish ancestry male severe erosion cases, 50 Finnish ancestry female severe erosion cases, 817 Finnish ancestry male non-severe erosion controls, 991 Finnish ancestry female non-severe erosion controls	NA	8p11.22	C8orf86, FGFR1	rs11993596-?	NR	8E-9	(male)	5.3	[2.70-10.30]	Illumina [NR] (imputed)	N
877	chr8	38371939	38371940	rs11993596	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs non-severe)	86 Finnish ancestry male severe erosion cases, 50 Finnish ancestry female severe erosion cases, 817 Finnish ancestry male non-severe erosion controls, 991 Finnish ancestry female non-severe erosion controls	NA	8p11.22	C8orf86, FGFR1	rs11993596-?	NR	6E-6		3.0	[1.80-5.14]	Illumina [NR] (imputed)	N
877	chr8	38375024	38375025	rs112007639	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs none or mild)	136 Finnish ancestry severe erosion cases, 1011 Finnish ancestry mild or no erosion controls	NA	8p11.22	C8orf86, FGFR1	rs112007639-?	NR	5E-6				Illumina [NR] (imputed)	N
877	chr8	38375024	38375025	rs112007639	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs non-severe)	86 Finnish ancestry male severe erosion cases, 50 Finnish ancestry female severe erosion cases, 817 Finnish ancestry male non-severe erosion controls, 991 Finnish ancestry female non-severe erosion controls	NA	8p11.22	C8orf86, FGFR1	rs112007639-?	NR	6E-6		3.0	[1.79-5.02]	Illumina [NR] (imputed)	N
877	chr8	38375024	38375025	rs112007639	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs non-severe)	86 Finnish ancestry male severe erosion cases, 50 Finnish ancestry female severe erosion cases, 817 Finnish ancestry male non-severe erosion controls, 991 Finnish ancestry female non-severe erosion controls	NA	8p11.22	C8orf86, FGFR1	rs112007639-?	NR	2E-8	(male)	5.1	[2.66-9.96]	Illumina [NR] (imputed)	N
877	chr8	38378370	38378371	rs12546327	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs non-severe)	86 Finnish ancestry male severe erosion cases, 50 Finnish ancestry female severe erosion cases, 817 Finnish ancestry male non-severe erosion controls, 991 Finnish ancestry female non-severe erosion controls	NA	8p11.22	NR	rs12546327-?	NR	6E-6				Illumina [NR] (imputed)	N
877	chr8	38378370	38378371	rs12546327	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs non-severe)	86 Finnish ancestry male severe erosion cases, 50 Finnish ancestry female severe erosion cases, 817 Finnish ancestry male non-severe erosion controls, 991 Finnish ancestry female non-severe erosion controls	NA	8p11.22	C8orf86, FGFR1	rs12546327-?	NR	2E-8	(male)	5.1	[2.66-9.90]	Illumina [NR] (imputed)	N
877	chr8	38379630	38379631	rs2461333	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs non-severe)	86 Finnish ancestry male severe erosion cases, 50 Finnish ancestry female severe erosion cases, 817 Finnish ancestry male non-severe erosion controls, 991 Finnish ancestry female non-severe erosion controls	NA	8p11.22	NR	rs2461333-?	NR	7E-6				Illumina [NR] (imputed)	N
877	chr8	38379630	38379631	rs2461333	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs non-severe)	86 Finnish ancestry male severe erosion cases, 50 Finnish ancestry female severe erosion cases, 817 Finnish ancestry male non-severe erosion controls, 991 Finnish ancestry female non-severe erosion controls	NA	8p11.22	C8orf86, FGFR1	rs2461333-?	NR	2E-8	(male)	5.0	[2.63-10]	Illumina [NR] (imputed)	N
877	chr8	38380392	38380393	rs867517174	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Cardio-cerebrovascular disease in hypertension	1,185 Korean ancestry cases, 15,117 Korean ancestry controls	NA	8p11.22		rs867517174-T	0.01859	9E-6		1.794	[1.386-2.323]	Affymetrix [7975321] (imputed)	N
878	chr8	38406047	38406048	rs4342555	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	8p11.22		rs4342555-T	0.098	8E-10		0.013	[0.0091-0.0169] unit increase	NR [NR] (imputed)	N
878	chr8	38469302	38469303	rs7832232	31417607	Gazal S	2019-07-30	Front Genet	The Genetic Architecture of Chronic Mountain Sickness in Peru.	Chronic mountain sickness	166 Quechua cases, 146 Quechua controls	NA	8p11.22	RNF5P1, TACC1	rs7832232-G		3E-6		2.16	[1.56-3.04]	Affymetrix [1288199]	N
878	chr8	38469302	38469303	rs7832232	29185836	Chen MH	2017-11-29	Platelets	Exome-chip meta-analysis identifies association between variation in ANKRD26 and platelet aggregation.	Platelet aggregation	3,664 European ancestry individuals, 549 Old Order Amish (founder/genetic isolate) individuals	1,184 European ancestry individuals, 613 African American individuals	8p11.22	RNF5P1	rs7832232-G	0.474	5E-6	(collagen 4)	0.109	[0.062-0.156] unit increase	Illumina [129094]	N
878	chr8	38469302	38469303	rs7832232	29185836	Chen MH	2017-11-29	Platelets	Exome-chip meta-analysis identifies association between variation in ANKRD26 and platelet aggregation.	Platelet aggregation	3,664 European ancestry individuals, 549 Old Order Amish (founder/genetic isolate) individuals	1,184 European ancestry individuals, 613 African American individuals	8p11.22	RNF5P1	rs7832232-G	0.474	4E-6	(collagen 3)	0.109	[0.062-0.156] unit increase	Illumina [129094]	N
878	chr8	38469302	38469303	rs7832232	20686608	Low SK	2010-07-29	PLoS One	Genome-wide association study of pancreatic cancer in Japanese population.	Pancreatic cancer	991 Japanese ancestry cases, 5,209 Japanese ancestry controls	NA	8p11.22	RNF5P1	rs7832232-A	0.45	5E-6	(recessive)	1.45	[1.24-1.71]	Illumina [420236]	N
878	chr8	38508356	38508357	rs895621	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	8p11.22		rs895621-?	NR	1E-8				NR [~ 8900000] (imputed)	N
879	chr8	38568214	38568215	rs57128498	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	8p11.22		rs57128498-?	NR	4E-20				NR [~ 8900000] (imputed)	N
879	chr8	38568214	38568215	rs57128498	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	8p11.22	TACC1	rs57128498-A	0.1557	9E-12		1.074	NR	Affymetrix [9154080] (imputed)	N
879	chr8	38594655	38594656	rs17506613	28235828	Traglia M	2017-04-03	G3 (Bethesda)	Independent Maternal and Fetal Genetic Effects on Midgestational Circulating Levels of Environmental Pollutants.	Midgestational circulating levels of PBDEs	329 Hispanic mothers, 273 European ancestry mothers, 122 Asian ancestry mothers, 23 South Asian ancestry mothers, 21 African American mothers, 22 other ancestry mothers	NA	8p11.22	TACC1	rs17506613-?		1E-6	(BDE-153)	0.27	[0.15-0.39] unit decrease	Affymetrix [629686]	N
879	chr8	38635475	38635476	rs10103542	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	8p11.22		rs10103542-C	0.41	5E-13		7.24	z score increase	Affymetrix [9061022] (imputed)	N
879	chr8	38635475	38635476	rs10103542	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	8p11.22		rs10103542-C	0.41	2E-9		5.97	z score increase	Affymetrix [9061022] (imputed)	N
879	chr8	38635475	38635476	rs10103542	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	8p11.22	NR	rs10103542-C	0.4209	1E-10				NR [9056863] (imputed)	N
879	chr8	38644913	38644914	rs11467	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	8p11.22	NR	rs11467-A	NR	4E-8		1.041	[1.03-1.06]	Affymetrix, Illumina [29235255] (imputed)	N
880	chr8	38697648	38697649	rs13262797	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	8p11.22		rs13262797-T	0.44	3E-9		5.94	z score increase	Affymetrix [9061022] (imputed)	N
880	chr8	38752272	38752273	rs111485759	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	8p11.22	NR	rs111485759-?	NR	2E-8				Illumina [7760689] (imputed)	N
880	chr8	38766073	38766074	rs10110562	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	8p11.22	NR	rs10110562-G	0.22551	3E-10		0.014207	[0.0098-0.0186] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
880	chr8	38781039	38781040	rs11782824	25993607	de Moor MH	2015-05-20	JAMA Psychiatry	Meta-analysis of Genome-wide Association Studies for Neuroticism, and the Polygenic Association With Major Depressive Disorder.	Neuroticism	Up to 627 Cilento (founder/genetic isolate) individuals, up to 2,296 Erasmus Rucphen (founder/genetic isolate) individuals, up to 1,650 Orcadian (founder/genetic isolate) individuals, up to 909 Vis (founder/genetic isolate) individuals, up to 58,179 European ancestry individuals	Up to 9,786 European ancestry individuals	8p11.22	NR	rs11782824-A	NR	4E-6		0.027	[0.015-0.039] unit decrease	Affymetrix, Illumina, Perlegen [6949614] (imputed)	N
880	chr8	38782626	38782627	rs7835508	31211820	Deek R	2019-06-18	PLoS One	Genome-wide association analysis of HDL-C in a Lebanese cohort.	High density lipoprotein cholesterol levels	2,700 Lebanese ancestry individuals	NA	8p11.22	PLEKHA2	rs7835508-C	NR	8E-6	(adjusted)	0.0273	[0.0393-0.0153] unit decrease	Illumina [307238]	N
881	chr8	38804068	38804069	rs6995018	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	8p11.22		rs6995018-?	NR	2E-9				NR [~ 8900000] (imputed)	N
881	chr8	38806933	38806934	rs115457172	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8p11.22	NR	rs115457172-C	0.01916	5E-9	(AGT)	0.07207	NR unit increase	Illumina [1671387] (imputed)	N
881	chr8	38819340	38819348	rs67141286	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	8p11.22	PLEKHA2	rs67141286-C	0.276483	4E-11		0.016395219	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
881	chr8	38843392	38843393	rs4733894	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	8p11.22	NR	rs4733894-?	NR	4E-11				Affymetrix [~ 8270000] (imputed)	N
881	chr8	38856335	38856336	rs56018450	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	8p11.22	ADAM9	rs56018450-G	0.410815	1E-9		0.013835057	[0.0094-0.0183] unit increase	Affymetrix [93095623] (imputed)	N
882	chr8	38947273	38947274	rs117318607	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	8p11.22	NR	rs117318607-G	0.02241599999999999	3E-9		0.0152873	[0.0096-0.021] unit increase	Affymetrix [16582909] (imputed)	N
882	chr8	38947273	38947274	rs117318607	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	8p11.22	NR	rs117318607-G	0.02241599999999999	2E-6		0.0139156	[0.0076-0.0202] unit increase	Affymetrix [16582965] (imputed)	N
882	chr8	39013719	39013720	rs79341048	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Job coding: it operations technician, computer operator or technician, database manager, network or web technician, web master, systems administrator or officer (UKB data field 22601_31313060)	1,336 European ancestry cases, 110,942 European ancestry controls	NA	8p11.22		rs79341048-T	0.005658	2E-9		1.84	[1.24-2.44] unit increase	NR [11842647] (imputed)	N
882	chr8	39013719	39013720	rs79341048	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Job SOC coding: IT operations technicians (UKB data field 22617_3131)	1,378 European ancestry cases, 112,463 European ancestry controls	NA	8p11.22		rs79341048-T	0.005617	4E-9		1.76	[1.17-2.35] unit increase	NR [11842647] (imputed)	N
882	chr8	39015519	39015520	rs28695458	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	8p11.22		rs28695458-?	NR	5E-9				NR [~ 8900000] (imputed)	N
882	chr8	39056176	39056177	rs117705146	33204752	Butler-Laporte G	2020-09-24	Open Forum Infect Dis	Genetic Determinants of Antibody-Mediated Immune Responses to Infectious Diseases Agents: A Genome-Wide and HLA Association Study.	Herpes simplex virus 2 mgG-1 antibody levels	1,382 White British ancestry individuals	NA	8p11.22	ADAM32	rs117705146-G	0.986	4E-9		0.94	unit decrease	NR [25472218] (imputed)	N
883	chr8	39089940	39089941	rs10958542	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-12p70 levels	8,270 Finnish ancestry individuals	NA	8p11.22	NR	rs10958542-C		9E-6		0.0709	[0.04-0.102] SD units increase	NR [10700000] (imputed)	N
883	chr8	39138303	39138304	rs187557084	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation-estimated granulocyte proportions	6,152 African American individuals	NA	8p11.22	NR	rs187557084-T	0.9876	2E-10		0.0753	[0.052-0.098] unit increase	Affymetrix, Illumina [12990599] (imputed)	N
884	chr8	39270820	39270821	rs78754071	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 8, orbital inclination due to vertical and horizontal position of exocanthion)	2,187 European ancestry individuals	NA	8p11.22	NR	rs78754071-C	0.04132	1E-6		0.3635	[0.22-0.51] unit increase	Illumina [34985077] (imputed)	N
884	chr8	39288429	39288430	rs7460856	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 5 levels	252 European ancestry individuals	NA	8p11.22		rs7460856-A	NR	2E-6		0.57189	[0.34-0.8] unit decrease	Illumina [NR] (imputed)	N
885	chr8	39390587	39390588	rs7812934	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mumps	31,227 European ancestry cases, 54,153 European ancestry controls	NA	8p11.22	NR	rs7812934-?	NR	5E-7		0.0894	[0.055-0.124] unit decrease	Illumina [at least 560000] (imputed)	N
885	chr8	39408585	39408586	rs10095849	26480920	Sung YJ	2015-10-20	Int J Obes (Lond)	Genome-wide association studies suggest sex-specific loci associated with abdominal and visceral fat.	Visceral adipose tissue/subcutaneous adipose tissue ratio	1,152 European ancestry males, 1,361 European ancestry females	NA	8p11.22	ADAM18	rs10095849-T	0.83	2E-7		0.04	[NR] unit decrease	Affymetrix, Illumina [2473256] (imputed)	N
885	chr8	39433934	39433935	rs180751169	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		8p11.22	Intergenic	rs180751169-T	0.002	5E-6	(liability model)	0.94	[0.53-1.35] unit increase	NR [19725427] (imputed)	N
886	chr8	39548377	39548378	rs1349547	22174851	Lingappa JR	2011-12-12	PLoS One	Genomewide association study for determinants of HIV-1 acquisition and viral set point in HIV-1 serodiscordant couples with quantified virus exposure.	HIV-1 susceptibility	496 African ancestry cases and 302 African ancestry exposed controls from serodiscordant couples	NA	8p11.22	ADAM18	rs1349547-?	NR	2E-6				Illumina [990115]	N
887	chr8	39622582	39622590	rs71237192	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	SIR2-like protein 2 levels	21,758 European ancestry individuals	9,173 individuals	8p11.22		rs71237192-A	0.65	2E-7		0.0673	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
887	chr8	39631377	39631378	rs149614318	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Treponemataceae abundance in stool	5,959 Finnish ancestry individuals	NA	8p11.22		rs149614318-T	0.0152181	3E-8		0.0837023	[0.054-0.113] unit increase	Illumina [7980478] (imputed)	N
887	chr8	39710323	39710324	rs10096637	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	8p11.22	NR	rs10096637-G	0.193	6E-7	(IFNGR1_of_CD20p)			Illumina [5084123] (imputed)	N
887	chr8	39713808	39713809	rs10096592	34021356	Sarnowski C	2021-05-22	Hum Reprod	Large trans-ethnic meta-analysis identifies AKR1C4 as a novel gene associated with age at menarche.	Menarche (age at onset)	19,028 African ancestry individuals, 3,205 South Asian ancestry individuals, 2,095 East Asian ancestry individuals, 10,661 Hispanic/Latina individuals, 3,557 individuals	NA	8p11.22	NR	rs10096592-T	0.13	4E-7		0.12	[0.081-0.159] unit increase	Affymetrix, Illumina [NR] (imputed)	N
888	chr8	39781443	39781444	rs7010461	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	8p11.21	IDO1	rs7010461-T	0.334	3E-20	(Indoleamine 2,3-dioxygenase 1, IDO1.9759.13.3)	0.25	[0.19-0.31] unit increase	Affymetrix [10572788] (imputed)	N
888	chr8	39823144	39823145	rs2160860	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	8p11.21	IDO1	rs2160860-A	0.61	7E-11	(X-12100--hydroxytryptophan)	0.012	[0.0081-0.0159] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
889	chr8	39865816	39865817	rs2955885	29538362	Jilling T	2018-03-14	Pediatr Res	Surgical necrotizing enterocolitis in extremely premature neonates is associated with genetic variations in an intergenic region of chromosome eight.	Surgical necrotising enterocolitis in extremely premature birth	20 African American cases, 6 Hispanic Caucasian cases, 4 European ancestry cases,  283 African American controls, 130 Hispanic Caucasian controls, 133 European ancestry controls,	NA	8p11.21	NR	rs2955885-?	NR	4E-6				Illumina [8270200] (imputed)	N
889	chr8	39917703	39917704	rs13265509	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or recurrent major depressive disorder x sex interaction (3df)	31,567 European ancestry schizophrenia cases,19,924 European ancestry bipolar disorder cases, 5,314 European ancestry recurrent major depressive disorder cases, 78,190 European ancestry controls	NA	8p11.21	NR	rs13265509-A	NR	5E-6				NR [NR] (imputed)	N
889	chr8	39917703	39917704	rs13265509	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia x sex interaction	31,567 European ancestry cases, 37,494 European ancestry controls, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	NA	8p11.21	IDO2, C8orf4	rs13265509-A	0.3985	5E-6		0.1219	[0.069-0.174] unit decrease	NR [NR] (imputed)	N
889	chr8	39917703	39917704	rs13265509	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia x sex interaction	31,567 European ancestry cases, 37,494 European ancestry controls	NA	8p11.21	IDO2, C8orf4	rs13265509-A	0.3984	2E-6		0.1279	[0.075-0.181] unit decrease	NR [NR] (imputed)	N
889	chr8	39955094	39955095	rs7846287	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	8p11.21		rs7846287-?	NR	6E-8				NR [~ 8900000] (imputed)	N
890	chr8	39989211	39989212	rs55780284	33594131	Donati G	2021-02-16	Sci Rep	Evidence for specificity of polygenic contributions to attainment in English, maths and science during adolescence.	Academic attainment (maths)	6,017 European ancestry adolescents	NA	8p11.21	NR	rs55780284-G	NR	2E-6		0.236	[0.13-0.34] unit increase	Illumina [6319684] (imputed)	N
890	chr8	40034433	40034434	rs7835454	27001270	Vishal M	2016-03-22	BMC Med Genomics	Genetic association and stress mediated down-regulation in trabecular meshwork implicates MPP7 as a novel candidate gene in primary open angle glaucoma.	Glaucoma (primary open-angle)	347 Indian ancestry cases, 354 Indian ancestry controls	319 Indian ancestry cases, 297 Indian ancestry controls	8p11.21	Intergenic	rs7835454-?		6E-6				Illumina [521873]	N
890	chr8	40036315	40036316	rs2929122	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8p11.21	NR	rs2929122-T	0.434056	5E-12				Affymetrix, Illumina [23472807] (imputed)	N
890	chr8	40037658	40037659	rs966169	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	8p11.21		rs966169-C	NR	5E-9		0.0124	[0.0083-0.0165] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
890	chr8	40039430	40039431	rs13270718	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	8p11.21	NR	rs13270718-A	0.562569	2E-12		0.013445	[0.0097-0.0172] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
890	chr8	40045118	40045119	rs6998007	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	8p11.21		rs6998007-T	NR	3E-16		0.0142	[0.011-0.018] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
890	chr8	40045118	40045119	rs6998007	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	8p11.21		rs6998007-T	NR	7E-10		0.0119	[0.0082-0.0156] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
890	chr8	40045118	40045119	rs6998007	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	8p11.21		rs6998007-T	NR	1E-10		0.0105	[0.0074-0.0136] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
890	chr8	40045118	40045119	rs6998007	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	8p11.21		rs6998007-T	NR	2E-9		0.0101	[0.0068-0.0134] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
890	chr8	40045118	40045119	rs6998007	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	8p11.21		rs6998007-T	0.564873	4E-17		0.018805578	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
890	chr8	40045118	40045119	rs6998007	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	8p11.21		rs6998007-T	0.564889	7E-16		0.018097498	[0.014-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
890	chr8	40045118	40045119	rs6998007	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	8p11.21		rs6998007-T	0.564878	4E-14		0.016903061	[0.013-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
890	chr8	40045118	40045119	rs6998007	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8p11.21	NR	rs6998007-T	0.518052	3E-21				Affymetrix, Illumina [24332387] (imputed)	N
890	chr8	40045118	40045119	rs6998007	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	8p11.21	NR	rs6998007-T	0.564482	9E-22		0.017874	[0.014-0.022] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
890	chr8	40045118	40045119	rs6998007	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8p11.21	NR	rs6998007-T	0.518169	7E-16				Affymetrix, Illumina [24588908] (imputed)	N
890	chr8	40045118	40045119	rs6998007	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8p11.21	NR	rs6998007-T	0.51904	4E-20				Affymetrix, Illumina [24653286] (imputed)	N
890	chr8	40045118	40045119	rs6998007	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	8p11.21	NR	rs6998007-T	0.564498	3E-21		0.017606	[0.014-0.021] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
890	chr8	40045118	40045119	rs6998007	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8p11.21	NR	rs6998007-T	0.520797	2E-17				Affymetrix, Illumina [24558453] (imputed)	N
890	chr8	40045118	40045119	rs6998007	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	8p11.21	NR	rs6998007-T	0.564412	4E-19		0.016646	[0.013-0.02] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
890	chr8	40045118	40045119	rs6998007	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	8p11.21		rs6998007-?	NR	4E-16				NR [~ 8900000] (imputed)	N
890	chr8	40050009	40050010	rs2980813	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	8p11.21		rs2980813-A	0.4692	4E-10		0.0088	[0.0061-0.0115] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
890	chr8	40050009	40050010	rs2980813	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	8p11.21	Intergenic	rs2980813-A	0.4692	3E-10	(MTAG)	0.0083	[0.0058-0.0108] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
890	chr8	40051185	40051186	rs2925033	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	8p11.21		rs2925033-T	NR	5E-8		0.0114	[0.0073-0.0155] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
890	chr8	40051185	40051186	rs2925033	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	8p11.21		rs2925033-T	0.480416	2E-16		0.018662231	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
890	chr8	40051185	40051186	rs2925033	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	8p11.21		rs2925033-T	0.480444	2E-11		0.015261514	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
890	chr8	40051185	40051186	rs2925033	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	8p11.21	NR	rs2925033-T	0.481358	2E-17		0.01566	[0.012-0.019] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
890	chr8	40051185	40051186	rs2925033	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	8p11.21		rs2925033-T	0.4818	5E-9	(conditional-joint)	0.0082	[0.0055-0.0109] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
890	chr8	40053604	40053605	rs10958605	22658654	Chung SJ	2012-05-30	Parkinsonism Relat Disord	Genomic determinants of motor and cognitive outcomes in Parkinson's disease.	Parkinson's disease (motor and cognition)	443 European ancestry cases	NA	8p11.21	C8orf4	rs10958605-?	NR	2E-6	(motor outcome)	1.81	[1.42-2.31]	NR [198345]	N
890	chr8	40056253	40056254	rs10100085	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	8p11.21		rs10100085-?	NR	8E-9				NR [~ 8900000] (imputed)	N
891	chr8	40119369	40119370	rs2980832	32902719	Hebbar P	2020-09-09	Hum Genet	Genome-wide landscape establishes novel association signals for metabolic traits in the Arab population.	Systolic blood pressure	2,732 Kuwaiti ancestry individuals	NA	8p11.21	LOC105379385, LOC105379387	rs2980832-?	NR	7E-7		4.96	NR unit decrease	Illumina [up to 1520000] (imputed)	N
891	chr8	40138338	40138339	rs2925009	29460428	Gelernter J	2018-02-20	Alcohol Clin Exp Res	Genomewide association study of alcohol dependence and related traits in a Thai population.	Response to alcohol consumption (flushing response)	537 Thai ancestry individuals with flushing response, 508 Thai ancestry individuals without flushing response	NA	8p11.21	intergenic	rs2925009-C	0.6463	3E-6		0.4501	[0.26-0.64] unit increase	Illumina [at least 4683137] (imputed)	N
891	chr8	40182302	40182303	rs6989042	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	8p11.21	C8orf4, ZMAT4	rs6989042-G	0.196346713	7E-6		1.0758488	[1.042095757-1.110695132]	Illumina [10439017] (imputed)	N
892	chr8	40252700	40252701	rs11786458	18821565	Lasky-Su J	2008-12-05	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association scan of quantitative traits for attention deficit hyperactivity disorder identifies novel associations and confirms candidate gene associations.	Inattentive symptoms	930 European ancestry trios	NA	8p11.21	intergenic	rs11786458-?	NR	9E-6	(binary)			Perlegen [429981]	N
892	chr8	40270702	40270703	rs2565117	28763065	Xia K	2017-08-01	Transl Psychiatry	Genome-wide association analysis identifies common variants influencing infant brain volumes.	Brain volume in infants (grey matter)	295 European, African American, Asian, Native American and other admixed ancestry infants, 17 European, African American, Asian, Native American and other admixed ancestry sibling pairs, 116 European, African American, Asian, Native American and other admixed ancestry twin pairs.	NA	8p11.21	ZMAT4	rs2565117-C	NR	3E-7		4.48	percent decrease	Affymetrix [8762422] (imputed)	N
892	chr8	40287248	40287249	rs62505227	25763902	Draaken M	2015-03-12	PLoS Genet	Genome-wide association study and meta-analysis identify ISL1 as genome-wide significant susceptibility gene for bladder exstrophy.	Classic bladder exstrophy	208 European ancestry cases, 1,703 European ancestry controls	NA	8p11.21	NR	rs62505227-A	0.086	5E-7		2.23	[1.63-3.06]	Illumina [7261187] (imputed)	N
892	chr8	40331185	40331186	rs13282670	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	8p11.21	NR	rs13282670-A	0.124	4E-6	(IFNGR1_of_CD8p_T)			Illumina [5084123] (imputed)	N
892	chr8	40333320	40333321	rs13278529	25979521	de Jong K	2015-06-05	J Allergy Clin Immunol	Genome-wide interaction study of gene-by-occupational exposure and effects on FEV1 levels.	Forced expiratory volume in 1 second (occupational environmental exposures interaction)	12,400 individuals	1,436 individuals	8p11.21	ZMAT4	rs13278529-G	0.15	7E-8	Mineral dust	174.4	[NR] unit increase	Illumina [up to 221663]	N
892	chr8	40356699	40356700	rs2195588	31311600	Namjou B	2019-07-17	BMC Med	GWAS and enrichment analyses of non-alcoholic fatty liver disease identify new trait-associated genes and pathways across eMERGE Network.	Aspartate aminotransferase levels in non-alcoholic fatty liver disease	1,075 European ancestry individuals	NA	8p11.21	intergenic	rs2195588-G	0.113128	5E-6		0.293446	[0.17-0.42] unit decrease	NR [7263501] (imputed)	N
892	chr8	40356699	40356700	rs2195588	27021288	Brevik EJ	2016-03-29	Am J Med Genet B Neuropsychiatr Genet	Genome-wide analyses of aggressiveness in attention-deficit hyperactivity disorder.	Aggressiveness in attention deficit hyperactivity disorder	1,060 European ancestry adult cases	NA	8p11.21	Intergenic	rs2195588-A		8E-6		2.7004	[1.52-3.88] unit increase	Illumina [7576458] (imputed)	N
893	chr8	40385515	40385516	rs7821819	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	8p11.21	NR	rs7821819-T	0.111	2E-6	(IFNGR1_of_CD8p_T)			Illumina [5084123] (imputed)	N
893	chr8	40399073	40399074	rs144885044	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Coffee consumption	335,909 European ancestry individuals	39,924 European ancestry individuals	8p11.21	ZMAT4	rs144885044-C	0.9851	4E-6		0.0286	[0.016-0.041] unit increase	Affymetrix [~ 7740000] (imputed)	N
893	chr8	40483037	40483038	rs75321045	29240982	Mitchell JA	2017-12-14	J Bone Miner Res	Multi-dimensional bone density phenotyping reveals new insights in to genetic regulation of the pediatric skeleton.	Pediatric areal bone mineral density (concordant skeletal phenotype)	470 European ancestry females, 463 European ancestry males, 256 African and Asian ancestry females, 210 African and Asian ancestry males	238 European ancestry females, 246 European ancestry males	8p11.21	ZMAT4	rs75321045-G	0.95	3E-8	(female)	0.61	[0.39-0.83] unit increase	Illumina [NR] (imputed)	N
893	chr8	40483037	40483038	rs75321045	29240982	Mitchell JA	2017-12-14	J Bone Miner Res	Multi-dimensional bone density phenotyping reveals new insights in to genetic regulation of the pediatric skeleton.	Pediatric areal bone mineral density (concordant skeletal phenotype)	470 European ancestry females, 463 European ancestry males, 256 African and Asian ancestry females, 210 African and Asian ancestry males	238 European ancestry females, 246 European ancestry males	8p11.21	ZMAT4	rs75321045-G	0.95	3E-8	(EA, female)	0.61	[0.39-0.83] unit increase	Illumina [NR] (imputed)	N
893	chr8	40484238	40484239	rs2722425	17903298	Meigs JB	2007-09-19	BMC Med Genet	Genome-wide association with diabetes-related traits in the Framingham Heart Study.	Fasting plasma glucose	1,027 individuals	NA	8p11.21	ZMAT4	rs2722425-?	NR	9E-6	(FPG)			Affymetrix [70897]	N
893	chr8	40484238	40484239	rs2722425	17903298	Meigs JB	2007-09-19	BMC Med Genet	Genome-wide association with diabetes-related traits in the Framingham Heart Study.	Fasting plasma glucose	1,027 individuals	NA	8p11.21	ZMAT4	rs2722425-?	NR	2E-8	(tFPG)			Affymetrix [70897]	N
894	chr8	40547116	40547117	rs4472504	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	8p11.21	NR	rs4472504-?	NR	1E-33				Affymetrix [NR]	N
894	chr8	40569596	40569597	rs7845664	32004448	Savage SA	2020-01-30	Am J Hum Genet	Genome-wide Association Study Identifies HLA-DPB1 as a Significant Risk Factor for Severe Aplastic Anemia.	Severe aplastic anemia	359 European ancestry cases, 1,396 European ancestry controls	175 European ancestry cases, 1,059 European ancestry controls	8p11.21	ZMAT4	rs7845664-?	NR	3E-7		1.4285715	[NR]	Illumina [688067]	N
894	chr8	40570172	40570173	rs114319887	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8p11.21	NR	rs114319887-G	0.01045	9E-10	(IGHG2)	1.808	NR unit increase	Illumina [1671387] (imputed)	N
895	chr8	40639918	40639919	rs184622626	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	8p11.21	ZMAT4	rs184622626-A	0.9609	4E-8		0.1097	[0.071-0.149] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
895	chr8	40639918	40639919	rs184622626	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	8p11.21	ZMAT4	rs184622626-A	0.9609	4E-8		0.1097	[0.071-0.149] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
895	chr8	40639918	40639919	rs184622626	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference	1,254 whole genome sequenced European ancestry individuals, 3,074 whole genome sequenced individuals, 29,716 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 701 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,050 Mylopotamos (founder/genetic isolate) individuals, 883 Pomak (founder/genetic isolate) individuals	205,909 European ancestry individuals	8p11.21	ZMAT4	rs184622626-A	0.9609	2E-6		0.1146	[0.067-0.162] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
895	chr8	40639918	40639919	rs184622626	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body fat mass	3,399 whole genome sequenced individuals, 11,802 European ancestry individuals	10,670 European ancestry individuals	8p11.21	ZMAT4	rs184622626-A	0.9602	2E-6		0.1419	[0.083-0.2] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
895	chr8	40663071	40663072	rs4434606	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris color (L* coordinate)	329 South Asian ancestry individuals		8p11.21	ZMAT4	rs4434606-T	0.545112	7E-6		0.35206	[0.2-0.5] unit increase	Illumina [640625] (imputed)	N
895	chr8	40709094	40709095	rs56349125	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	8p11.21	NR	rs56349125-?	NR	5E-8		0.169029	[0.11-0.23] unit decrease	NR [13958389] (imputed)	N
895	chr8	40723037	40723038	rs16890054	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	8p11.21	NR	rs16890054-?	NR	6E-7		0.17953	[0.11-0.25] unit decrease	NR [13958389] (imputed)	N
895	chr8	40723969	40723970	rs869422	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	8p11.21	NR	rs869422-G		9E-22		0.13	[0.11-0.15] unit increase	NR [NR]	N
895	chr8	40723969	40723970	rs869422	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Myopia	106,086 European ancestry cases, 85,757 European ancestry controls	NA	8p11.21	ZMAT4	rs869422-?	NR	4E-31		1.1074197	[1.09-1.13]	Illumina [13762925] (imputed)	N
895	chr8	40726393	40726394	rs7829127	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	8p11.21	ZMAT4	rs7829127-A	0.7917	1E-27		10.911	[NR] z score decrease	Affymetrix, Illumina [~ 11000000] (imputed)	N
895	chr8	40726393	40726394	rs7829127	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Myopia (age of diagnosis)	104,293 European ancestry individuals	NA	8p11.21	NR	rs7829127-A	0.7844	8E-26		0.0915	[0.074-0.109] unit decrease	Illumina [~ 10600000] (imputed)	N
895	chr8	40726393	40726394	rs7829127	23396134	Verhoeven VJ	2013-02-10	Nat Genet	Genome-wide meta-analyses of multiancestry cohorts identify multiple new susceptibility loci for refractive error and myopia.	Refractive error	37,382 European ancestry individuals, 3,995 Chinese ancestry individuals, 2,273 Malay ancestry individuals, 2,108 Indian ancestry individuals	NA	8p11.21	ZMAT4	rs7829127-G	0.25	4E-10		0.116	[0.081-0.151] unit increase	Affymetrix, Illumina [2500000] (imputed)	N
895	chr8	40726581	40726582	rs16890057	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	8p11.21	ZMAT4	rs16890057-?		2E-81				Affymetrix, Illumina [NR] (imputed)	N
895	chr8	40734661	40734662	rs2137277	27020472	Fan Q	2016-03-29	Nat Commun	Meta-analysis of gene-environment-wide association scans accounting for education level identifies additional loci for refractive error.	Spherical equivalent (joint analysis main effects and education interaction)	2,604 Erasmus Rucphen population isolate individuals, 456 Sardinian population isolate individuals, 36,976 European ancestry individuals, 5,971 East Asian ancestry individuals, 2,256 Malay ancestry individuals, 2,088 Indian ancestry individuals	NA	8p11.21	ZMAT4	rs2137277-A	0.2	1E-7	(European ancestry)			Affymetrix, Illumina [up to 7331415] (imputed)	N
895	chr8	40734661	40734662	rs2137277	27020472	Fan Q	2016-03-29	Nat Commun	Meta-analysis of gene-environment-wide association scans accounting for education level identifies additional loci for refractive error.	Spherical equivalent (joint analysis main effects and education interaction)	2,604 Erasmus Rucphen population isolate individuals, 456 Sardinian population isolate individuals, 36,976 European ancestry individuals, 5,971 East Asian ancestry individuals, 2,256 Malay ancestry individuals, 2,088 Indian ancestry individuals	NA	8p11.21	ZMAT4	rs2137277-A	0.18	4E-9				Affymetrix, Illumina [up to 7331415] (imputed)	N
895	chr8	40762658	40762659	rs1022192	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	8p11.21		rs1022192-T	0.483032	2E-8		0.0113131	[0.0074-0.0153] unit increase	Illumina [13479295] (imputed)	N
896	chr8	40883576	40883577	rs7826932	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	8p11.21	NR	rs7826932-?		1E-6	(IL6R)	0.2499	[NR] unit increase	Illumina [NR]	N
896	chr8	40885577	40885578	rs1379134	28468790	Agopian AJ	2017-06-01	Circ Cardiovasc Genet	Genome-Wide Association Studies and Meta-Analyses for Congenital Heart Defects.	Left ventricular obstructive tract defect (inherited effect)	247 European ancestry trios, 70 non-European ancestry trios, 192 European and other ancestry trios	NA	8p11.21	intergenic	rs1379134-?	NR	4E-6		2.6964426	[1.77-4.1]	Illumina [at least 4483243] (imputed)	N
897	chr8	40929680	40929681	rs539907082	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-to-hip ratio adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,049 whole genome sequenced individuals, 29,518 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,001 Mylopotamos (founder/genetic isolate) individuals, 867 Pomak (founder/genetic isolate) individuals	206,045 European ancestry individuals	8p11.21	RNU6-356P	rs539907082-T	0.0026	7E-6		0.4439	[0.25-0.64] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
897	chr8	40950272	40950273	rs16890285	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Anti-saccade response	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	8p11.21	SFRP1	rs16890285-G	0.142	5E-6	(African)			Illumina [4404269] (imputed)	N
897	chr8	40951505	40951506	rs4736916	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	8p11.21		rs4736916-?	NR	1E-8				NR [~ 8900000] (imputed)	N
897	chr8	40983184	40983185	rs77924284	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	8p11.21	NR	rs77924284-?	NR	3E-7	(AA)	0.5406	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
897	chr8	40998853	40998854	rs34314196	30306274	Shah RL	2018-10-10	Hum Genet	Genome-wide association studies for corneal and refractive astigmatism in UK Biobank demonstrate a shared role for myopia susceptibility loci.	Refractive astigmatism	88,005 European ancestry individuals		8p11.21	SFRP1	rs34314196-T	0.874	8E-6		0.019	[0.011-0.027] dioptres decrease	NR [5900115] (imputed)	N
898	chr8	41036556	41036557	rs11774048	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	8p11.21		rs11774048-?	NR	7E-10				NR [~ 8900000] (imputed)	N
898	chr8	41123476	41123477	rs10092343	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs10092343-G	0.59797	3E-17		0.0746176	[0.056-0.093] increase	Affymetrix [11014269] (imputed)	N
898	chr8	41123731	41123732	rs10092633	30431558	Smith SB	2018-11-13	Pain	Genome-wide association reveals contribution of MRAS to painful temporomandibular disorder in males.	Temporomandibular joint disorder	999 cases, 2,031 controls	at least 2,232 European ancestry cases, at least 140,725 European ancestry controls, 2,597 Hispanic cases, 9,378 Hispanic controls, 710 cases, 1,122 controls	8p11.21	NR	rs10092633-A	0.14	4E-6	(AA, female)	3.8	[3.23-4.37]	Illumina [9700000] (imputed)	N
898	chr8	41143025	41143026	rs7833518	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8p11.21	SFRP1	rs7833518-G	0.596246	2E-9	(-16 ms)	0.0335914	[0.022-0.045] unit decrease	Affymetrix [10000000] (imputed)	N
898	chr8	41143025	41143026	rs7833518	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8p11.21	SFRP1	rs7833518-G	0.596246	1E-9	(-18 ms)	0.0340954	[0.023-0.045] unit decrease	Affymetrix [10000000] (imputed)	N
899	chr8	41163687	41163687	rs576583353	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	8p11.21		rs576583353-CAGGGG	NR	5E-14		0.01	[0.0075-0.0125] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
899	chr8	41163687	41163687	rs576583353	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	8p11.21	SFRP1	rs576583353-CAGGGG	0.3861	1E-9		0.0119	[0.008-0.0158] unit decrease	Affymetrix [18391927] (imputed)	N
899	chr8	41166639	41166642	rs3055861	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	8p11.21	NR	rs3055861-G	0.387	5E-14	(Secreted frizzled-related protein 1, SFRP1.3221.54.1)	0.19	[0.13-0.25] unit decrease	Affymetrix [10572788] (imputed)	N
899	chr8	41167192	41167193	rs72643819	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	8p11.21		rs72643819-?	NR	2E-13				NR [~ 8900000] (imputed)	N
899	chr8	41167561	41167562	rs147918758	33594131	Donati G	2021-02-16	Sci Rep	Evidence for specificity of polygenic contributions to attainment in English, maths and science during adolescence.	Academic attainment (English)	5,983 European ancestry adolescents	NA	8p11.21	SFRP1	rs147918758-G	NR	8E-6		0.084	[0.047-0.121] unit decrease	Illumina [6319684] (imputed)	N
899	chr8	41171231	41171232	rs1838964	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	8p11.21		rs1838964-T	0.4	3E-25		10.38	z score increase	Affymetrix [9061022] (imputed)	N
899	chr8	41171231	41171232	rs1838964	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	8p11.21		rs1838964-T	0.4	6E-17		8.36	z score increase	Affymetrix [9061022] (imputed)	N
899	chr8	41171231	41171232	rs1838964	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	8p11.21	NR	rs1838964-T	0.4017	1E-17				NR [9056863] (imputed)	N
899	chr8	41171231	41171232	rs1838964	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	8p11.21	SFRP1	rs1838964-C	0.57109375	2E-6	(SFRP1, 3221_54_1)	0.11693811	[0.069-0.165] unit increase	Illumina [> 1000000] (imputed)	N
899	chr8	41173407	41173408	rs1562420	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	8p11.21		rs1562420-G	0.4	3E-12		6.96	z score increase	Affymetrix [9061022] (imputed)	N
899	chr8	41173407	41173408	rs1562420	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	8p11.21	NR	rs1562420-G	0.4073	1E-9				NR [9056863] (imputed)	N
899	chr8	41176665	41176666	rs1159162	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SFRP1	5,362 Icelandic ancestry individuals	NA	8p11.21		rs1159162-G	0.4237	2E-12		0.131661	[0.095-0.168] unit decrease	Illumina [7506463] (imputed)	N
899	chr8	41193632	41193633	rs138942288	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	8p11.21	SFRP1	rs138942288-A	0.005	4E-15	(Secreted frizzled-related protein 1, SFRP1.3221.54.1)	1.4	[1.05-1.75] unit increase	Affymetrix [10572788] (imputed)	N
899	chr8	41225455	41225456	rs1374585	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	8p11.21	NR	rs1374585-T	NR	1E-10		0.0236	[0.016-0.031] unit decrease	Affymetrix [9000000] (imputed)	N
899	chr8	41231949	41231950	rs2883471	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8p11.21	GOLGA7	rs2883471-?	NR	6E-6	(LPE 20:4)	0.17992109	[0.1-0.26] unit increase	Affymetrix [at least 2500000] (imputed)	N
900	chr8	41410117	41410118	rs532400764	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	8p11.21	RP11-360L9.4	rs532400764-A	0.00273000000000001	6E-10		0.13618577	[0.093-0.179] unit decrease	Affymetrix [93095623] (imputed)	N
900	chr8	41415617	41415618	rs28793375	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-7 levels	3,409 Finnish ancestry individuals	NA	8p11.21	NR	rs28793375-C		4E-6		0.1638	[0.093-0.235] SD units decrease	NR [10700000] (imputed)	N
900	chr8	41415617	41415618	rs28793375	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-5 levels	3,364 Finnish ancestry individuals	NA	8p11.21	NR	rs28793375-C		5E-6		0.1657	[0.095-0.237] SD units decrease	NR [10700000] (imputed)	N
901	chr8	41437349	41437350	rs188345231	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Growth-regulated protein alpha levels	3,505 Finnish ancestry individuals	NA	8p11.21	NR	rs188345231-C		4E-6		0.623	[0.36-0.88] SD units decrease	NR [10700000] (imputed)	N
901	chr8	41488037	41488038	rs6986080	29358691	Bonas-Guarch S	2018-01-22	Nat Commun	Re-analysis of public genetic data reveals a rare X-chromosomal variant associated with type 2 diabetes.	Type 2 diabetes	19,693 European ancestry cases, 107,308 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls		8p11.21	ANK1	rs6986080-G	NR	2E-6		1.09		Affymetrix, Illumina [1918233] (imputed)	N
901	chr8	41505848	41505849	rs116964396	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	8p11.21	NKX6-3	rs116964396-A	0.034739	2E-10		0.045298	[0.031-0.059] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
901	chr8	41506151	41506152	rs4736999	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	8p11.21		rs4736999-G	0.506626454	3E-13		0.071754485	[0.053-0.091] unit increase	Illumina [13134967] (imputed)	N
901	chr8	41506151	41506152	rs4736999	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	46,511 Asian ancestry cases, 169,776 Asian ancestry controls	NA	8p11.21	NR	rs4736999-G	0.5053	1E-22		0.0854	[0.068-0.102] unit increase	Affymetrix, Illumina [1077427] (imputed)	N
901	chr8	41508576	41508577	rs13262861	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	8p11.21	NR	rs13262861-C	0.8238	3E-59		0.1016	[0.089-0.114] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
901	chr8	41508576	41508577	rs13262861	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	8p11.21	NR	rs13262861-C	0.8326	8E-79		0.1021	[0.092-0.113] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
901	chr8	41508576	41508577	rs13262861	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	8p11.21	ANK1	rs13262861-C	0.8292	4E-12		1.07	[1.05-1.09]	Affymetrix, Illumina [~ 27000000] (imputed)	N
901	chr8	41509258	41509259	rs12549902	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	8p11.21		rs12549902-A	0.5053991	2E-21		1.0811037	[1.063847304-1.098640033]	Illumina [8919992] (imputed)	N
901	chr8	41509258	41509259	rs12549902	26818947	Imamura M	2016-01-28	Nat Commun	Genome-wide association studies in the Japanese population identify seven novel loci for type 2 diabetes.	Type 2 diabetes	15,463 Japanese ancestry cases, 26,183 Japanese ancestry controls	20,490 East Asian ancestry cases, 22,922 East Asian ancestry controls, 38,947 European ancestry cases, 121,903 European ancestry controls, 10,587 South Asian ancestry cases, 14,378 South Asian ancestry controls, 3,848 Mexican/Latino cases, 4,366 Mexican/Latino controls	8p11.21	ANK1	rs12549902-A	NR	1E-12	(Japanese)	1.1138276	[1.08115471648339-1.14748774769957]	Illumina [7521072] (imputed)	N
901	chr8	41509258	41509259	rs12549902	24699409	Prokopenko I	2014-04-03	PLoS Genet	A central role for GRB10 in regulation of islet function in man.	Insulin levels adjusted for BMI	up to 4,409 European individuals, up to 411 Old Order Amish (founder/genetic isolate) individuals	18,535 European individuals	8p11.21	ANK1	rs12549902-A	0.58	2E-7		0.055	[0.033-0.077] unit decrease	Affymetrix, Illumina [at least 1961018] (imputed)	N
901	chr8	41509258	41509259	rs12549902	24699409	Prokopenko I	2014-04-03	PLoS Genet	A central role for GRB10 in regulation of islet function in man.	Corrected insulin response adjusted for insulin sensitivity index	up to 4,565 European individuals, up to 413 Old Order Amish (founder/genetic isolate) individuals	20,461 European individuals	8p11.21	ANK1	rs12549902-A	0.58	3E-6		0.05	[0.028-0.072] unit decrease	Affymetrix, Illumina [at least 1961018] (imputed)	N
901	chr8	41509258	41509259	rs12549902	24699409	Prokopenko I	2014-04-03	PLoS Genet	A central role for GRB10 in regulation of islet function in man.	Corrected insulin response	up to 4,961 European individuals, up to 411 Old Order Amish (founder/genetic isolate) individuals	20,722 European individuals	8p11.21	ANK1	rs12549902-A	0.58	1E-8		0.06	[0.04-0.08] unit decrease	Affymetrix, Illumina [at least 1961018] (imputed)	N
901	chr8	41509914	41509915	rs4736819	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	8p11.21		rs4736819-T	NR	3E-19		0.0673	[0.053-0.082] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
901	chr8	41509914	41509915	rs4736819	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	8p11.21	ANK1	rs4736819-T	0.5537	5E-7		1.04	[1.02-1.05]	Affymetrix, Illumina [~ 27000000] (imputed)	N
901	chr8	41510259	41510260	rs12550613	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	24,646 African American cases, 31,446 African American controls	NA	8p11.21	NR	rs12550613-G	0.31	6E-16		0.114	[0.087-0.141] unit decrease	Affymetrix, Illumina [945603] (imputed)	N
901	chr8	41512581	41512595	rs6150565	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	8p11.21	ANK1	rs6150565-C	0.533824	2E-95		0.04867115	[0.044-0.053] unit decrease	Affymetrix [93095623] (imputed)	N
901	chr8	41512581	41512595	rs6150565	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	8p11.21	ANK1	rs6150565-C	0.533825	5E-100		0.04985307	[0.045-0.054] unit decrease	Affymetrix [93095623] (imputed)	N
901	chr8	41512581	41512595	rs6150565	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	8p11.21	ANK1	rs6150565-C	0.533867	3E-43		0.031579927	[0.027-0.036] unit increase	Affymetrix [93095623] (imputed)	N
901	chr8	41512581	41512595	rs6150565	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	8p11.21	ANK1	rs6150565-C	0.533736	1E-28		0.050055645	[0.041-0.059] unit increase	Affymetrix [93095623] (imputed)	N
901	chr8	41512581	41512595	rs6150565	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	8p11.21	ANK1	rs6150565-C	0.533898	1E-156		0.062413696	[0.058-0.067] unit increase	Affymetrix [93095623] (imputed)	N
901	chr8	41512581	41512595	rs6150565	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	8p11.21	ANK1	rs6150565-C	0.533879	9E-29		0.0139995	[0.0099-0.0181] unit increase	Affymetrix [93095623] (imputed)	N
901	chr8	41512581	41512595	rs6150565	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	8p11.21	ANK1	rs6150565-CACAGCAGAGTCTAT	0.533816	1E-66		0.0158461	[0.012-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
901	chr8	41512581	41512595	rs6150565	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	8p11.21	ANK1	rs6150565-C	0.533802	7E-64		0.038717713	[0.034-0.043] unit decrease	Affymetrix [93095623] (imputed)	N
901	chr8	41512581	41512595	rs6150565	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	8p11.21	ANK1	rs6150565-C	0.533802	2E-68		0.040136978	[0.036-0.045] unit decrease	Affymetrix [93095623] (imputed)	N
901	chr8	41512581	41512595	rs6150565	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	8p11.21	ANK1	rs6150565-C	NR	6E-12		0.0267674	[0.019-0.035] unit increase	Affymetrix [16832071] (imputed)	N
901	chr8	41512581	41512595	rs6150565	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	8p11.21	ANK1	rs6150565-C	0.5335	2E-14		0.02769819	[0.021-0.035] unit decrease	Affymetrix [~ 2500000] (imputed)	N
901	chr8	41512581	41512595	rs6150565	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	8p11.21	ANK1	rs6150565-C	0.5335	4E-14		0.02736749	[0.02-0.034] unit decrease	Affymetrix [~ 2500000] (imputed)	N
901	chr8	41512581	41512595	rs6150565	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	8p11.21	ANK1	rs6150565-C	0.5335	3E-12		0.02523244	[0.018-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
901	chr8	41512581	41512595	rs6150565	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	8p11.21	ANK1	rs6150565-C	0.5335	1E-12		0.0256901	[0.019-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
901	chr8	41512648	41512650	rs33981001	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	8p11.21	ANK1	rs33981001-G	0.464643	4E-16		0.037161667	[0.028-0.046] unit decrease	Affymetrix [93095623] (imputed)	N
901	chr8	41512648	41512650	rs33981001	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	8p11.21	ANK1, NKX6-3	rs33981001-GGT	0.389	5E-28		1.08	[1.06-1.09]	Affymetrix, Illumina [11800000] (imputed)	N
901	chr8	41512648	41512650	rs33981001	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	8p11.21	ANK1	rs33981001-GGT	0.44	8E-23		1.09	1.07-1.11	Illumina [12557761] (imputed)	N
901	chr8	41516580	41516581	rs4317621	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	8p11.21	ANK1	rs4317621-A	0.4207	8E-9	(conditional)	0.0035	[0.00095-0.00605] unit decrease	Affymetrix, Illumina [33811881] (imputed)	N
901	chr8	41517859	41517860	rs565491	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	8p11.21		rs565491-A	NR	1E-8	(conditional)	1.0780796	[1.05047653421464-1.1064080335737]	Illumina [8919992] (imputed)	N
901	chr8	41519247	41519248	rs516946	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	8p11.21	ANK1	rs516946-T	0.23936670103039	3E-22		0.0824	[0.066-0.099] unit decrease	NR [5035015] (imputed)	N
901	chr8	41519247	41519248	rs516946	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	8p11.21	ANK1	rs516946-C	0.7694	5E-11	(EA)	0.0778	[0.054-0.101] unit increase	Affymetrix, Illumina [NR] (imputed)	N
901	chr8	41519247	41519248	rs516946	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	8p11.21	ANK1	rs516946-C	0.7694	2E-21		0.086	[0.068-0.104] unit increase	Affymetrix, Illumina [NR] (imputed)	N
901	chr8	41519247	41519248	rs516946	24509480	Mahajan A	2014-02-09	Nat Genet	Genome-wide trans-ancestry meta-analysis provides insight into the genetic architecture of type 2 diabetes susceptibility.	Type 2 diabetes	12,171 European ancestry cases, 56,862 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls	21,491 European ancestry cases, 55,647 European ancestry controls	8p11.21	ANK1	rs516946-C	0.77	2E-7		1.1	[1.06-1.15]	Affymetrix, Illumina [2500000] (imputed)	N
901	chr8	41519247	41519248	rs516946	22885922	Morris AP	2012-09-01	Nat Genet	Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes.	Type 2 diabetes	6,377 European ancestry male cases, 5,794 European ancestry female cases, 22,243 European ancestry male controls, 34,619 European ancestry female controls	12,938 European ancestry male cases, 8,553 European ancestry female cases, 904 Pakistani ancestry male cases, 274 Pakistani ancestry female cases, 30,273 European ancestry male controls, 25,374 European ancestry female controls, 2,088 Pakistani ancestry male controls, 384 Pakistani ancestry female controls	8p11.21	ANK1	rs516946-C	NR	8E-11	(men)	1.12	[1.08-1.16]	Affymetrix, Illumina [up to 2500000] (imputed)	N
901	chr8	41519247	41519248	rs516946	22885922	Morris AP	2012-09-01	Nat Genet	Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes.	Type 2 diabetes	6,377 European ancestry male cases, 5,794 European ancestry female cases, 22,243 European ancestry male controls, 34,619 European ancestry female controls	12,938 European ancestry male cases, 8,553 European ancestry female cases, 904 Pakistani ancestry male cases, 274 Pakistani ancestry female cases, 30,273 European ancestry male controls, 25,374 European ancestry female controls, 2,088 Pakistani ancestry male controls, 384 Pakistani ancestry female controls	8p11.21	ANK1	rs516946-C	0.764476252935483	2E-10		1.09	[1.06-1.12]	Affymetrix, Illumina [up to 2500000] (imputed)	N
901	chr8	41519461	41519462	rs515071	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 29,0641 European ancestry controls	NA	8p11.21	RP11-930P14.1	rs515071-A	0.238099	3E-8		0.075833455	[0.049-0.103] unit decrease	Affymetrix [7288503] (imputed)	N
901	chr8	41519461	41519462	rs515071	22456796	Imamura M	2012-03-28	Hum Mol Genet	A single-nucleotide polymorphism in ANK1 is associated with susceptibility to type 2 diabetes in Japanese populations.	Type 2 diabetes	4,470 Japanese ancestry cases, 3,071 Japanese ancestry controls	7,605 Japanese ancestry cases, 3,534 Japanese ancestry controls	8p11.21	ANK1	rs515071-?	0.794	1E-8		1.18	[1.12-1.25]	NR [2229890] (imputed)	N
901	chr8	41522990	41522991	rs508419	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Type 2 diabetes	approximately 459,000 European ancestry individuals	NA	8p11.21		rs508419-?	NR	2E-15				NR [~ 8900000] (imputed)	N
901	chr8	41523759	41523760	rs11354309	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	8p11.21		rs11354309-C	0.144253146	1E-19		0.119364604	[0.094-0.145] unit decrease	Illumina [13429769] (imputed)	N
901	chr8	41529993	41529994	rs149859024	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	8p11.21	ANK1	rs149859024-A	0.00920200000000004	2E-11		0.09805076	[0.069-0.127] unit increase	Affymetrix [93095623] (imputed)	N
901	chr8	41533513	41533514	rs13266210	31681408	Yang XL	2019-10-11	Front Genet	Three Novel Loci for Infant Head Circumference Identified by a Joint Association Analysis.	Birth weight (MTAG)	up to 182,902 European ancestry individuals	NA	8p11.21	NR	rs13266210-A	0.79	6E-10		0.028996976	[0.02-0.038] unit increase	NR [1977400] (imputed)	N
901	chr8	41533513	41533514	rs13266210	31097437	Plotnikov D	2019-05-16	Br J Ophthalmol	Association between birth weight and refractive error in adulthood: a Mendelian randomisation study.	Birth weight	188,039 European ancestry individuals	NA	8p11.21	NR	rs13266210-A	0.21	1E-9		0.024	[0.016-0.032] z score increase	Affymetrix [up to 10400000] (imputed)	N
901	chr8	41533513	41533514	rs13266210	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	8p11.21	ANK1	rs13266210-A	0.786224	2E-17		0.0268	[0.021-0.033] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
901	chr8	41533513	41533514	rs13266210	27680694	Horikoshi M	2016-10-13	Nature	Genome-wide associations for birth weight and correlations with adult disease.	Birth weight	133,903 European ancestry individuals, 6,635 African American individuals, 420 Turkish ancestry individuals, 365 Moroccan ancestry individuals, 395 Surinamese ancestry individuals, 840 Chinese ancestry individuals.	9,799 European ancestry individuals, 1,449 Filipino ancestry individuals.	8p11.21	ANK1, NKX6.3	rs13266210-A	0.79	2E-11		0.0298	[0.021-0.038] unit increase	Affymetrix, Illumina [at least 22434434] (imputed)	N
901	chr8	41537317	41537318	rs62508166	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	8p11.21		rs62508166-A	NR	1E-32		0.1018	[0.085-0.118] unit decrease	Affymetrix, Illumina [25845091] (imputed)	N
901	chr8	41540621	41540622	rs72638977	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	8p11.21	ANK1	rs72638977-A	0.966078	1E-8		0.0328423	[0.022-0.044] unit increase	Affymetrix [NR] (imputed)	N
901	chr8	41540621	41540622	rs72638977	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	8p11.21	ANK1	rs72638977-A	0.966089	4E-8		0.0316061	[0.02-0.043] unit increase	Affymetrix [NR] (imputed)	N
901	chr8	41540621	41540622	rs72638977	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	8p11.21		rs72638977-?	NR	8E-26				NR [~ 8900000] (imputed)	N
901	chr8	41540827	41540828	rs72638978	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	8p11.21	ANK1	rs72638978-C	0.023153	8E-10		0.04582924	[0.031-0.06] unit increase	Affymetrix [93095623] (imputed)	N
901	chr8	41540827	41540828	rs72638978	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	8p11.21	ANK1	rs72638978-C	0.023161	8E-14		0.055614382	[0.041-0.07] unit increase	Affymetrix [93095623] (imputed)	N
901	chr8	41542092	41542093	rs34265667	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	8p11.21		rs34265667-A	NR	1E-27		0.0685	[0.056-0.081] unit increase	Affymetrix, Illumina [20535842] (imputed)	N
901	chr8	41542092	41542093	rs34265667	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	8p11.21	ANK1	rs34265667-A	0.034156	9E-21		0.057965465	[0.046-0.07] unit decrease	Affymetrix [93095623] (imputed)	N
901	chr8	41542092	41542093	rs34265667	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8p11.21	NR	rs34265667-A	0.0324996	2E-17				Affymetrix, Illumina [24653286] (imputed)	N
901	chr8	41542092	41542093	rs34265667	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	8p11.21	NR	rs34265667-A	0.033357	2E-20		0.047488	[0.037-0.058] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
901	chr8	41543674	41543675	rs34664882	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	8p11.21	NR	rs34664882-A	NR	4E-28		0.0726	[0.06-0.086] unit increase	Affymetrix [9000000] (imputed)	N
901	chr8	41543674	41543675	rs34664882	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	8p11.21	NR	rs34664882-A	NR	3E-113		0.1524	[0.14-0.17] unit decrease	Affymetrix [9000000] (imputed)	N
901	chr8	41543674	41543675	rs34664882	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	8p11.21	NR	rs34664882-A	NR	3E-19		0.0637	[0.05-0.078] unit increase	Affymetrix [9000000] (imputed)	N
901	chr8	41543674	41543675	rs34664882	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	8p11.21	ANK1	rs34664882-A	0.034077	2E-140		0.163816	[0.15-0.18] unit increase	Affymetrix [93095623] (imputed)	N
901	chr8	41543674	41543675	rs34664882	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	8p11.21	ANK1	rs34664882-A	0.034081	3E-149		0.16903257	[0.16-0.18] unit increase	Affymetrix [93095623] (imputed)	N
901	chr8	41543674	41543675	rs34664882	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	8p11.21	ANK1	rs34664882-A	0.0340510000000001	4E-207		0.22825782	[0.21-0.24] unit decrease	Affymetrix [93095623] (imputed)	N
901	chr8	41543674	41543675	rs34664882	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	8p11.21	ANK1	rs34664882-A	0.033989	1E-239		0.24235694	[0.23-0.26] unit decrease	Affymetrix [93095623] (imputed)	N
901	chr8	41543674	41543675	rs34664882	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	8p11.21	ANK1	rs34664882-A	0.034126	7E-68		0.164367	[0.15-0.18] unit increase	Affymetrix [93095623] (imputed)	N
901	chr8	41543674	41543675	rs34664882	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	8p11.21	ANK1	rs34664882-A	0.034065	2E-66		0.1081371	[0.096-0.12] unit increase	Affymetrix [93095623] (imputed)	N
901	chr8	41543674	41543675	rs34664882	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	8p11.21	ANK1	rs34664882-A	0.034068	4E-73		0.113494754	[0.1-0.13] unit increase	Affymetrix [93095623] (imputed)	N
901	chr8	41543674	41543675	rs34664882	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	8p11.21	ANK1	rs34664882-A		6E-14		0.044	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
901	chr8	41543674	41543675	rs34664882	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin concentration	172,851 European ancestry individuals	NA	8p11.21	ANK1	rs34664882-A	0.0338	4E-43		0.1313973	[0.11-0.15] unit increase	Affymetrix [~ 2500000] (imputed)	N
901	chr8	41543674	41543675	rs34664882	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	8p11.21	ANK1	rs34664882-A	0.0338	9E-11		0.06439752	[0.045-0.084] unit decrease	Affymetrix [~ 2500000] (imputed)	N
901	chr8	41549193	41549194	rs6474359	28898252	Wheeler E	2017-09-12	PLoS Med	Impact of common genetic determinants of Hemoglobin A1c on type 2 diabetes risk and diagnosis in ancestrally diverse populations: A transethnic genome-wide meta-analysis.	Glycated hemoglobin levels	88,355 European ancestry individuals	NA	8p11.21	ANK1	rs6474359-T	0.953	2E-16		0.0436	[0.033-0.054] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
901	chr8	41549193	41549194	rs6474359	20858683	Soranzo N	2010-09-21	Diabetes	Common variants at 10 genomic loci influence hemoglobin A?(C) levels via glycemic and nonglycemic pathways.	Glycated hemoglobin levels	up to 46,368 European ancestry individuals	NA	8p11.21	ANK1	rs6474359-T	0.97	1E-8		0.06	[0.04-0.08] % increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
901	chr8	41549490	41549491	rs72638986	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	8p11.21	ANK1	rs72638986-A	0.034017	3E-31		0.0699325	[0.059-0.081] unit decrease	Affymetrix [93095623] (imputed)	N
901	chr8	41549490	41549491	rs72638986	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	8p11.21	ANK1	rs72638986-A	0.03403	9E-15		0.04754279	[0.036-0.06] unit decrease	Affymetrix [93095623] (imputed)	N
901	chr8	41549490	41549491	rs72638986	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	8p11.21	ANK1	rs72638986-A	0.0339	5E-56		0.1567194	[0.14-0.18] unit increase	Affymetrix [~ 2500000] (imputed)	N
901	chr8	41549490	41549491	rs72638986	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	8p11.21	ANK1	rs72638986-A	0.0339	2E-57		0.1589925	[0.14-0.18] unit increase	Affymetrix [~ 2500000] (imputed)	N
901	chr8	41549490	41549491	rs72638986	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	8p11.21	ANK1	rs72638986-A	0.0338	3E-18		0.08651011	[0.067-0.106] unit increase	Affymetrix [~ 2500000] (imputed)	N
901	chr8	41549490	41549491	rs72638986	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	8p11.21	ANK1	rs72638986-A	0.0338	2E-19		0.08931233	[0.07-0.109] unit increase	Affymetrix [~ 2500000] (imputed)	N
902	chr8	41550194	41550195	rs148942046	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	8p11.21	ANK1	rs148942046-T	0.00221099999999996	1E-9		0.15299405	[0.1-0.2] unit decrease	Affymetrix [93095623] (imputed)	N
902	chr8	41552045	41552046	rs148766658	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	8p11.21	ANK1	rs148766658-C	0.0378	6E-7		1.09	[1.05-1.13]	Affymetrix, Illumina [~ 27000000] (imputed)	N
902	chr8	41575676	41575677	rs142626656	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Reticulocyte count	437,291 European ancestry individuals	NA	8p11.21		rs142626656-?	NR	6E-17		0.226753	[0.17-0.28] unit increase	NR [9800000] (imputed)	N
902	chr8	41575676	41575677	rs142626656	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean sphered cell volume	437,736 European ancestry individuals	NA	8p11.21		rs142626656-?	NR	4E-24		0.258513	[0.21-0.31] unit decrease	NR [9800000] (imputed)	N
902	chr8	41575676	41575677	rs142626656	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	High light scatter reticulocyte count	437,723 European ancestry individuals	NA	8p11.21		rs142626656-?	NR	3E-9		0.161878	[0.11-0.22] unit increase	NR [9800000] (imputed)	N
902	chr8	41575676	41575677	rs142626656	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Hemoglobin A1c levels	437,749 European ancestry individuals	NA	8p11.21		rs142626656-?	NR	2E-28		0.295574	[0.24-0.35] unit decrease	NR [9800000] (imputed)	N
902	chr8	41575676	41575677	rs142626656	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Direct bilirubin levels	372,420 European ancestry individuals	NA	8p11.21		rs142626656-?	NR	2E-9		0.157022	[0.099-0.215] unit increase	NR [9800000] (imputed)	N
902	chr8	41575676	41575677	rs142626656	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Bilirubin levels	436,055 European ancestry individuals	NA	8p11.21		rs142626656-?	NR	2E-13		0.185274	[0.13-0.24] unit increase	NR [9800000] (imputed)	N
902	chr8	41575676	41575677	rs142626656	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	8p11.21	NR	rs142626656-A	NR	2E-17		0.2876	[0.22-0.35] unit decrease	Affymetrix [9000000] (imputed)	N
902	chr8	41575676	41575677	rs142626656	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	8p11.21	ANK1	rs142626656-A	0.00136099999999995	1E-21		0.289139	[0.23-0.35] unit increase	Affymetrix [93095623] (imputed)	N
902	chr8	41575676	41575677	rs142626656	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	8p11.21	ANK1	rs142626656-A	0.00136099999999995	2E-19		0.27349088	[0.21-0.33] unit increase	Affymetrix [93095623] (imputed)	N
902	chr8	41575676	41575677	rs142626656	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	8p11.21	ANK1	rs142626656-A	0.00136000000000003	3E-41		0.40388367	[0.35-0.46] unit decrease	Affymetrix [93095623] (imputed)	N
902	chr8	41575676	41575677	rs142626656	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	8p11.21	ANK1	rs142626656-A	0.00136000000000003	1E-14		0.23327492	[0.17-0.29] unit decrease	Affymetrix [93095623] (imputed)	N
902	chr8	41575676	41575677	rs142626656	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	8p11.21	ANK1	rs142626656-A	0.00137500000000002	8E-25		0.291237	[0.23-0.35] unit increase	Affymetrix [93095623] (imputed)	N
902	chr8	41575676	41575677	rs142626656	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	8p11.21	ANK1	rs142626656-A	0.00136000000000003	7E-11		0.19719954	[0.14-0.26] unit increase	Affymetrix [93095623] (imputed)	N
902	chr8	41575676	41575677	rs142626656	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	8p11.21	ANK1	rs142626656-A	0.00136000000000003	6E-10		0.18693663	[0.13-0.25] unit increase	Affymetrix [93095623] (imputed)	N
902	chr8	41577120	41577121	rs7823698	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	8p11.21	ANK1	rs7823698-G	0.093174	6E-25		0.04019571	[0.033-0.048] unit decrease	Affymetrix [93095623] (imputed)	N
902	chr8	41577120	41577121	rs7823698	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	8p11.21	ANK1	rs7823698-G	0.0931380000000001	7E-63		0.07901216	[0.07-0.088] unit decrease	Affymetrix [93095623] (imputed)	N
902	chr8	41577120	41577121	rs7823698	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	8p11.21	ANK1	rs7823698-G	0.0931340000000001	1E-16		0.0676688	[0.06-0.075] unit increase	Affymetrix [93095623] (imputed)	N
902	chr8	41578027	41578028	rs17661137	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	8p11.21	ANK1	rs17661137-C	0.06304	5E-41		0.06743321	[0.058-0.077] unit decrease	Affymetrix [93095623] (imputed)	N
902	chr8	41589735	41589736	rs149489081	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	8p11.21	ANK1	rs149489081-G	0.011006	8E-74		0.20279415	[0.18-0.22] unit increase	Affymetrix [93095623] (imputed)	N
902	chr8	41589735	41589736	rs149489081	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	8p11.21	ANK1	rs149489081-G	0.011005	6E-75		0.20437653	[0.18-0.23] unit increase	Affymetrix [93095623] (imputed)	N
902	chr8	41589735	41589736	rs149489081	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	8p11.21	ANK1	rs149489081-G	0.011001	3E-12		0.07750399	[0.056-0.099] unit decrease	Affymetrix [93095623] (imputed)	N
902	chr8	41589735	41589736	rs149489081	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	8p11.21	ANK1	rs149489081-G	0.011003	5E-180		0.3185832	[0.3-0.34] unit decrease	Affymetrix [93095623] (imputed)	N
902	chr8	41589735	41589736	rs149489081	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	8p11.21	ANK1	rs149489081-G	0.010984	3E-130		0.27167422	[0.25-0.29] unit decrease	Affymetrix [93095623] (imputed)	N
902	chr8	41589735	41589736	rs149489081	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	8p11.21	ANK1	rs149489081-G	0.010985	1E-11		0.0778998	[0.058-0.098] unit decrease	Affymetrix [93095623] (imputed)	N
902	chr8	41589735	41589736	rs149489081	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	8p11.21	ANK1	rs149489081-G	0.010995	5E-68		0.191056	[0.17-0.21] unit increase	Affymetrix [93095623] (imputed)	N
902	chr8	41589735	41589736	rs149489081	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	8p11.21	ANK1	rs149489081-G	0.010988	4E-29		0.1247649	[0.1-0.15] unit increase	Affymetrix [93095623] (imputed)	N
902	chr8	41589735	41589736	rs149489081	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	8p11.21	ANK1	rs149489081-G	0.0109860000000001	1E-30		0.12818399	[0.11-0.15] unit increase	Affymetrix [93095623] (imputed)	N
902	chr8	41589735	41589736	rs149489081	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	8p11.21	ANK1	rs149489081-G	0.0117	2E-20		0.1637982	[0.13-0.2] unit increase	Affymetrix [~ 2500000] (imputed)	N
902	chr8	41589735	41589736	rs149489081	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	8p11.21	ANK1	rs149489081-G	0.0117	6E-21		0.1656339	[0.13-0.2] unit increase	Affymetrix [~ 2500000] (imputed)	N
902	chr8	41589735	41589736	rs149489081	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin concentration	172,851 European ancestry individuals	NA	8p11.21	ANK1	rs149489081-G	0.0117	2E-17		0.1445435	[0.11-0.18] unit increase	Affymetrix [~ 2500000] (imputed)	N
902	chr8	41589735	41589736	rs149489081	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	8p11.21	ANK1	rs149489081-G	0.0117	9E-10		0.1079376	[0.073-0.142] unit increase	Affymetrix [~ 2500000] (imputed)	N
902	chr8	41589735	41589736	rs149489081	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	8p11.21	ANK1	rs149489081-G	0.0117	2E-10		0.1126133	[0.078-0.147] unit increase	Affymetrix [~ 2500000] (imputed)	N
902	chr8	41590990	41590991	rs17661508	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	8p11.21	NR	rs17661508-A	NR	8E-17		0.057	[0.044-0.07] unit increase	Affymetrix [9000000] (imputed)	N
902	chr8	41595527	41595528	rs117746146	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	8p11.21	NR	rs117746146-T	NR	4E-29		0.0888	[0.073-0.104] unit increase	Affymetrix [9000000] (imputed)	N
902	chr8	41602114	41602115	rs88906	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	8p11.21	ANK1	rs88906-C	0.894136	1E-15		0.032187473	[0.024-0.04] unit decrease	Affymetrix [93095623] (imputed)	N
902	chr8	41603672	41603673	rs571133	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	8p11.21	ANK1	rs571133-G	0.319089	1E-10		0.020341069	[0.014-0.027] unit increase	Affymetrix [93095623] (imputed)	N
902	chr8	41603672	41603673	rs571133	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	8p11.21	ANK1	rs571133-G	0.319092	1E-11		0.021315875	[0.015-0.027] unit increase	Affymetrix [93095623] (imputed)	N
902	chr8	41610941	41610942	rs557441242	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	8p11.21	ANK1	rs557441242-C	0.010456	2E-9		0.0818522	[0.061-0.103] unit increase	Affymetrix [93095623] (imputed)	N
902	chr8	41614502	41614503	rs7831492	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal cancer	978 Austrian ancestry cases, 855 Austrian ancestry controls	NA	8p11.21	Intergenic	rs7831492-?		6E-6		1.369863	[NR]	Affymetrix [492217] (imputed)	N
902	chr8	41615137	41615138	rs7006290	22424883	Imboden M	2012-03-15	J Allergy Clin Immunol	Genome-wide association study of lung function decline in adults with and without asthma.	Pulmonary function decline	1,441 European ancestry asthma cases, 2,677 European ancestry controls	1,160 European ancestry asthma cases, 10,858 European ancestry controls	8p11.21	ANK1	rs7006290-?	NR	5E-6	(FEV1 decline in asthmatics)	0.1846	[0.11-0.26] unit increase	Illumina [~ 2500000] (imputed)	N
902	chr8	41630330	41630331	rs149794144	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	8p11.21	ANK1	rs149794144-G	0.00788199999999995	1E-17		0.10914632	[0.084-0.134] unit increase	Affymetrix [93095623] (imputed)	N
902	chr8	41630330	41630331	rs149794144	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	8p11.21	ANK1	rs149794144-G	0.00788299999999997	1E-16		0.10566525	[0.081-0.131] unit increase	Affymetrix [93095623] (imputed)	N
902	chr8	41630330	41630331	rs149794144	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	8p11.21	ANK1	rs149794144-G	0.00787499999999997	5E-12		0.087928444	[0.063-0.113] unit increase	Affymetrix [93095623] (imputed)	N
902	chr8	41630330	41630331	rs149794144	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	8p11.21	ANK1	rs149794144-G	0.00787499999999997	1E-11		0.08635572	[0.061-0.111] unit increase	Affymetrix [93095623] (imputed)	N
902	chr8	41630404	41630405	rs4737009	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	8p11.21		rs4737009-A	0.453688	1E-10		0.0246682	[0.017-0.032] unit increase	Illumina [13476266] (imputed)	N
902	chr8	41630404	41630405	rs4737009	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	33,307 East Asian ancestry individuals	NA	8p11.21	ANK1	rs4737009-A	0.5074	2E-16		0.022	[0.017-0.027] unit increase	Affymetrix, Illumina [15728197] (imputed)	N
902	chr8	41630404	41630405	rs4737009	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	15,248 Hispanic individuals	NA	8p11.21	ANK1	rs4737009-A	0.278	2E-6		0.0243	[0.015-0.034] unit increase	Affymetrix, Illumina [29199641] (imputed)	N
902	chr8	41630404	41630405	rs4737009	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	8p11.21	ANK1	rs4737009-A	0.2426	8E-56		0.0228	[0.02-0.026] unit increase	Affymetrix, Illumina [33811881] (imputed)	N
902	chr8	41630404	41630405	rs4737009	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	8p11.21	ANK1	rs4737009-A	0.236024	1E-21		0.024807831	[0.02-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
902	chr8	41630404	41630405	rs4737009	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	8p11.21	ANK1	rs4737009-A	0.236035	2E-21		0.024685413	[0.02-0.03] unit increase	Affymetrix [93095623] (imputed)	N
902	chr8	41630404	41630405	rs4737009	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	126,151 East Asian ancestry individuals	NA	8p11.21	NR	rs4737009-G	0.532669	1E-13		0.033016	[0.024-0.042] SD units increase	Affymetrix, Illumina [16289083] (imputed)	N
902	chr8	41630404	41630405	rs4737009	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Hemoglobin A1c levels	559 African American individuals, 10,408 Hispanic/Latino individuals, 92 Asian ancestry individuals, 4 Native American ancestry individuals, 115 individuals	NA	8p11.21	NR	rs4737009-?	NR	3E-10		0.09308493	[0.064-0.122] unit increase	Illumina [22871999] (imputed)	N
902	chr8	41630404	41630405	rs4737009	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	8p11.21		rs4737009-?	NR	3E-11				NR [~ 8900000] (imputed)	N
902	chr8	41630404	41630405	rs4737009	28898252	Wheeler E	2017-09-12	PLoS Med	Impact of common genetic determinants of Hemoglobin A1c on type 2 diabetes risk and diagnosis in ancestrally diverse populations: A transethnic genome-wide meta-analysis.	Glycated hemoglobin levels	88,355 European ancestry individuals	NA	8p11.21	ANK1	rs4737009-A	0.2531	4E-27		0.0212	[0.017-0.025] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
902	chr8	41630404	41630405	rs4737009	28898252	Wheeler E	2017-09-12	PLoS Med	Impact of common genetic determinants of Hemoglobin A1c on type 2 diabetes risk and diagnosis in ancestrally diverse populations: A transethnic genome-wide meta-analysis.	Glycated hemoglobin levels	18,472 East Asian ancestry individuals	NA	8p11.21	ANK1	rs4737009-A	0.4977	1E-10		0.0255	[0.018-0.033] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
902	chr8	41630404	41630405	rs4737009	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular hemoglobin concentration	up to 21,020 European ancestry individuals, up to 3,621 African American individuals, up to 15,062 East Asian individuals.	16,389 European and African American individuals.	8p11.21	ANK1	rs4737009-?	NR	3E-10				NR [2500000] (imputed)	N
902	chr8	41630404	41630405	rs4737009	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular hemoglobin concentration	up to 21,020 European ancestry individuals, up to 3,621 African American individuals, up to 15,062 East Asian individuals.	16,389 European and African American individuals.	8p11.21	ANK1	rs4737009-?	NR	1E-8				NR [2500000] (imputed)	N
902	chr8	41630404	41630405	rs4737009	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	8p11.21	ANK1	rs4737009-A	0.2363	1E-10		0.02681208	[0.019-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
902	chr8	41630404	41630405	rs4737009	24647736	Chen P	2014-03-19	Diabetes	Multiple nonglycemic genomic loci are newly associated with blood level of glycated hemoglobin in East Asians.	Glycated hemoglobin levels	17,290 East Asian ancestry individuals, 1,727 Malay ancestry individuals	up to 13,585 East Asian ancestry individuals	8p11.21	ANK1	rs4737009-A	0.51	1E-15		0.08	[0.060-0.100] unit increase	Affymetrix, Illumina [up to 2400000] (imputed)	N
902	chr8	41630404	41630405	rs4737009	20858683	Soranzo N	2010-09-21	Diabetes	Common variants at 10 genomic loci influence hemoglobin A?(C) levels via glycemic and nonglycemic pathways.	Glycated hemoglobin levels	up to 46,368 European ancestry individuals	NA	8p11.21	ANK1	rs4737009-A	0.24	6E-12		0.03	[0.02-0.04] % increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
902	chr8	41630446	41630447	rs4737010	34951656	Downie CG	2021-12-24	Diabetologia	Multi-ethnic GWAS and fine-mapping of glycaemic traits identify novel loci in the PAGE Study.	Glycated haemoglobin HbA1c levels adjusted for BMI	9,228 European ancestry individuals	NA	8p11.21		rs4737010-A	0.2429	8E-8		0.0951	[0.06-0.13] unit increase	Affymetrix, Illumina [23060038] (imputed)	N
902	chr8	41630446	41630447	rs4737010	34951656	Downie CG	2021-12-24	Diabetologia	Multi-ethnic GWAS and fine-mapping of glycaemic traits identify novel loci in the PAGE Study.	Glycated haemoglobin HbA1c levels adjusted for BMI	23,357 European ancestry, African American or Afro-Caribbean, Hispanic or Latin American, Asian ancestry individuals	NA	8p11.21		rs4737010-A	0.2983	1E-15		0.0864	[0.065-0.108] unit increase	Affymetrix, Illumina [23060038] (imputed)	N
902	chr8	41630446	41630447	rs4737010	34951656	Downie CG	2021-12-24	Diabetologia	Multi-ethnic GWAS and fine-mapping of glycaemic traits identify novel loci in the PAGE Study.	Glycated haemoglobin HbA1c levels adjusted for BMI	10,693 Hispanic or Latin American individuals	NA	8p11.21		rs4737010-A	0.2698	4E-9		0.0937	[0.062-0.125] unit increase	Affymetrix, Illumina [23060038] (imputed)	N
902	chr8	41630446	41630447	rs4737010	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	8p11.21		rs4737010-A	NR	1E-52		0.0347	[0.03-0.039] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
902	chr8	41630446	41630447	rs4737010	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	8p11.21		rs4737010-A	NR	2E-128		0.0549	[0.05-0.059] unit decrease	Affymetrix, Illumina [20536605] (imputed)	N
902	chr8	41630446	41630447	rs4737010	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	8p11.21		rs4737010-A	NR	8E-16		0.0196	[0.015-0.024] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
902	chr8	41630446	41630447	rs4737010	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	8p11.21		rs4737010-A	NR	4E-158		0.0628	[0.058-0.067] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
902	chr8	41630446	41630447	rs4737010	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	8p11.21		rs4737010-G	0.771	9E-11				Affymetrix [10369434] (imputed)	N
902	chr8	41630446	41630447	rs4737010	34014839	Page GP	2021-05-20	J Clin Invest	Multi-ancestry genome-wide association study identifies 27 loci associated with measures of hemolysis following blood storage.	hemolysis of donated blood (osmotic)	Up to 7,586 non-Hispanic White ancestry individuals, Up to 1,049 East Asian ancestry individuals, Up to 257 South Asian ancestry individuals, Up to 1,046 African Americans individuals, Up to 456 Mexican and Central American Hispanics individuals, Up to 489 Caribbean Island Hispanics, Up to 1,336 individuals	NA	8p11.21	ANK1	rs4737010-?	NR	6E-28		1.9	NR unit decrease	NR [14100000] (imputed)	N
902	chr8	41630446	41630447	rs4737010	34014839	Page GP	2021-05-20	J Clin Invest	Multi-ancestry genome-wide association study identifies 27 loci associated with measures of hemolysis following blood storage.	hemolysis of donated blood (osmotic)	Up to 7,586 non-Hispanic White ancestry individuals	NA	8p11.21	ANK1	rs4737010-?	NR	5E-8				NR [14100000] (imputed)	N
902	chr8	41630446	41630447	rs4737010	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular hemoglobin concentration	25,256 Amish, White ancestry individuals, 447 Asian ancestry individuals, 13,112 Black individuals, 13,833 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	8p11.21		rs4737010-A	NR	5E-17		0.06	[0.04-0.08] unit decrease	Illumina [101200590]	N
902	chr8	41630446	41630447	rs4737010	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	8p11.21	ANK1	rs4737010-A	0.228598	1E-208		0.10877445	[0.1-0.12] unit decrease	Affymetrix [93095623] (imputed)	N
902	chr8	41630446	41630447	rs4737010	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	8p11.21	ANK1	rs4737010-A	0.228586	2E-212		0.10983153	[0.1-0.12] unit decrease	Affymetrix [93095623] (imputed)	N
902	chr8	41630446	41630447	rs4737010	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	8p11.21	ANK1	rs4737010-A	0.228601	3E-35		0.034527916	[0.029-0.04] unit increase	Affymetrix [93095623] (imputed)	N
902	chr8	41630446	41630447	rs4737010	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	8p11.21	ANK1	rs4737010-A	0.228685	3E-10		0.016650518	[0.011-0.022] unit increase	Affymetrix [93095623] (imputed)	N
902	chr8	41630446	41630447	rs4737010	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	8p11.21	ANK1	rs4737010-A	0.228693	3E-559		0.18437517	[0.18-0.19] unit increase	Affymetrix [93095623] (imputed)	N
902	chr8	41630446	41630447	rs4737010	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	8p11.21	ANK1	rs4737010-A	0.228757	8E-379		0.13665895	[0.13-0.14] unit increase	Affymetrix [93095623] (imputed)	N
902	chr8	41630446	41630447	rs4737010	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	8p11.21	ANK1	rs4737010-A	0.228622	1E-48		0.0453868	[0.041-0.05] unit increase	Affymetrix [93095623] (imputed)	N
902	chr8	41630446	41630447	rs4737010	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	8p11.21	ANK1	rs4737010-A	0.228661	1E-175		0.0881297	[0.083-0.093] unit decrease	Affymetrix [93095623] (imputed)	N
902	chr8	41630446	41630447	rs4737010	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	8p11.21	ANK1	rs4737010-A	0.228669	8E-22		0.025422234	[0.02-0.031] unit increase	Affymetrix [93095623] (imputed)	N
902	chr8	41630446	41630447	rs4737010	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	8p11.21	ANK1	rs4737010-A	0.228658	9E-23		0.02638673	[0.021-0.032] unit increase	Affymetrix [93095623] (imputed)	N
902	chr8	41630446	41630447	rs4737010	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	8p11.21	ANK1	rs4737010-A	0.228653	6E-107		0.06161148	[0.056-0.067] unit decrease	Affymetrix [93095623] (imputed)	N
902	chr8	41630446	41630447	rs4737010	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	8p11.21	ANK1	rs4737010-A	0.228647	2E-112		0.063220754	[0.058-0.069] unit decrease	Affymetrix [93095623] (imputed)	N
902	chr8	41630446	41630447	rs4737010	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8p11.21	NR	rs4737010-G	0.765051	1E-53				Affymetrix, Illumina [22063850] (imputed)	N
902	chr8	41630446	41630447	rs4737010	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	8p11.21	NR	rs4737010-G	0.771306	6E-56		0.03555	[0.031-0.04] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
902	chr8	41630446	41630447	rs4737010	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8p11.21	NR	rs4737010-A	0.287588	4E-11				Affymetrix, Illumina [24332387] (imputed)	N
902	chr8	41630446	41630447	rs4737010	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8p11.21	NR	rs4737010-A	0.269795	1E-10				Affymetrix, Illumina [23467995] (imputed)	N
902	chr8	41630446	41630447	rs4737010	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	8p11.21	NR	rs4737010-A	0.228874	5E-13		0.016216	[0.012-0.021] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
902	chr8	41630446	41630447	rs4737010	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8p11.21	NR	rs4737010-A	0.278595	6E-82				Affymetrix, Illumina [24246363] (imputed)	N
902	chr8	41630446	41630447	rs4737010	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	8p11.21	NR	rs4737010-A	0.228932	5E-74		0.039618	[0.035-0.044] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
902	chr8	41630446	41630447	rs4737010	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8p11.21	NR	rs4737010-A	0.284681	7E-267				Affymetrix, Illumina [21126107] (imputed)	N
902	chr8	41630446	41630447	rs4737010	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	8p11.21	NR	rs4737010-A	0.228947	7E-255		0.081205	[0.077-0.086] SD unit decrease	Affymetrix, Illumina [50282193] (imputed)	N
902	chr8	41630446	41630447	rs4737010	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8p11.21	NR	rs4737010-A	0.269686	5E-31				Affymetrix, Illumina [23472807] (imputed)	N
902	chr8	41630446	41630447	rs4737010	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	8p11.21	NR	rs4737010-A	0.228863	2E-32		0.026819	[0.022-0.031] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
902	chr8	41630446	41630447	rs4737010	31213470	Moon JY	2019-06-18	Diabetes Care	A Genome-Wide Association Study Identifies Blood Disorder-Related Variants Influencing Hemoglobin A1c With Implications for Glycemic Status in U.S. Hispanics/Latinos.	Glycated hemoglobin levels	9,636 Hispanic/Latino individuals	4,777 Hispanic/Latino individuals	8p11.21	ANK1	rs4737010-A	0.263	5E-10		0.03	[0.01-0.05] % increase	Illumina [11510031] (imputed)	N
902	chr8	41630446	41630447	rs4737010	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	8p11.21		rs4737010-?	NR	9E-50				NR [~ 8900000] (imputed)	N
902	chr8	41630446	41630447	rs4737010	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	8p11.21	NKX6-3	rs4737010-A	NR	5E-13		0.0318976	[0.023-0.041] unit increase	Affymetrix [16832071] (imputed)	N
902	chr8	41630446	41630447	rs4737010	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	8p11.21	ANK1	rs4737010-A	0.2282	2E-86		0.08473854	[0.076-0.093] unit decrease	Affymetrix [~ 2500000] (imputed)	N
902	chr8	41630446	41630447	rs4737010	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	8p11.21	ANK1	rs4737010-A	0.2282	2E-89		0.08630154	[0.078-0.095] unit decrease	Affymetrix [~ 2500000] (imputed)	N
902	chr8	41630446	41630447	rs4737010	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	8p11.21	ANK1	rs4737010-A	0.2281	1E-16		0.03509659	[0.027-0.043] unit increase	Affymetrix [~ 2500000] (imputed)	N
902	chr8	41630446	41630447	rs4737010	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin concentration	172,851 European ancestry individuals	NA	8p11.21	ANK1	rs4737010-A	0.2281	4E-62		0.06899346	[0.061-0.077] unit decrease	Affymetrix [~ 2500000] (imputed)	N
902	chr8	41630446	41630447	rs4737010	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	8p11.21	ANK1	rs4737010-A	0.2281	6E-13		0.03101623	[0.023-0.039] unit increase	Affymetrix [~ 2500000] (imputed)	N
902	chr8	41630446	41630447	rs4737010	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	8p11.21	ANK1	rs4737010-A	0.2282	1E-11		0.02891962	[0.021-0.037] unit increase	Affymetrix [~ 2500000] (imputed)	N
902	chr8	41630446	41630447	rs4737010	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	8p11.21	ANK1	rs4737010-A	0.2282	8E-28		0.04696383	[0.039-0.055] unit decrease	Affymetrix [~ 2500000] (imputed)	N
902	chr8	41630446	41630447	rs4737010	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	8p11.21	ANK1	rs4737010-A	0.2282	8E-30		0.04870744	[0.04-0.057] unit decrease	Affymetrix [~ 2500000] (imputed)	N
902	chr8	41631303	41631304	rs117166152	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Ischemic stroke (cardioembolic)	174 Indian ancestry cases, 2,154 Indian ancestry controls	NA	8p11.21		rs117166152-?	NR	6E-6		1.1118541	[1.06208228765447-1.16395821846263]	Illumina [up to 7827597] (imputed)	N
902	chr8	41631480	41631481	rs9785172	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Granulocyte-colony stimulating factor levels	7,904 Finnish ancestry individuals	NA	8p11.21	NR	rs9785172-C		7E-6		0.3273	[0.19-0.47] SD units decrease	NR [10700000] (imputed)	N
902	chr8	41631558	41631569	rs67464700	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	8p11.21	ANK1	rs67464700-C	0.6345	2E-11		0.02550277	[0.018-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
902	chr8	41631787	41631788	rs10099921	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	8p11.21	ANK1	rs10099921-C	0.6344	1E-11		0.02555842	[0.018-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
902	chr8	41635126	41635127	rs376967724	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	8p11.21	NR	rs376967724-A	0.296245	2E-12		0.015089	[0.011-0.019] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
902	chr8	41635128	41635129	rs72640321	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	8p11.21	ANK1	rs72640321-C	0.292364	5E-9		0.014648563	[0.0097-0.0196] unit increase	Affymetrix [93095623] (imputed)	N
902	chr8	41641556	41641557	rs10096908	28498854	Liang J	2017-05-12	PLoS Genet	Single-trait and multi-trait genome-wide association analyses identify novel loci for blood pressure in African-ancestry populations.	Systolic blood pressure	Up to 31,155 African individuals	Up to 4,187 African individuals, up to 14,016 Korean ancestry individuals, up to 23,914 European ancestry individuals, up to 12,278 Hispanic individuals	8p11.21	NR	rs10096908-?	NR	2E-6		0.8292	[0.49-1.17] unit increase	Affymetrix, Illumina [at least 30072738] (imputed)	N
902	chr8	41641556	41641557	rs10096908	28498854	Liang J	2017-05-12	PLoS Genet	Single-trait and multi-trait genome-wide association analyses identify novel loci for blood pressure in African-ancestry populations.	Hypertension	18,440 African individuals	2,375 African individuals, 3,718 Korean ancestry individuals, 9,348 European ancestry individuals, 3,445 Hispanic individuals	8p11.21	NR	rs10096908-?	NR	6E-6		0.0947	[0.054-0.135] unit increase	Affymetrix, Illumina [at least 30072738] (imputed)	N
902	chr8	41641556	41641557	rs10096908	28498854	Liang J	2017-05-12	PLoS Genet	Single-trait and multi-trait genome-wide association analyses identify novel loci for blood pressure in African-ancestry populations.	Blood pressure traits (multi-trait analysis)	Up to 31,155 African individuals	Up to 4,187 African individuals, up to 14,016 Korean ancestry individuals, up to 23,914 European ancestry individuals, up to 12,278 Hispanic individuals	8p11.21	NR	rs10096908-?	NR	2E-6	(Hom)			Affymetrix, Illumina [at least 30072738] (imputed)	N
902	chr8	41645564	41645565	rs10112594	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	8p11.21	ANK1	rs10112594-T	0.771967	4E-46		0.053942442	[0.047-0.061] unit increase	Affymetrix [93095623] (imputed)	N
902	chr8	41653539	41653540	rs12550646	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	8p11.21	ANK1	rs12550646-G	0.294207	3E-86		0.052579485	[0.047-0.058] unit decrease	Affymetrix [93095623] (imputed)	N
902	chr8	41653539	41653540	rs12550646	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	8p11.21	ANK1	rs12550646-G	0.294317	3E-12		0.017954258	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
902	chr8	41653539	41653540	rs12550646	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	8p11.21	ANK1	rs12550646-G	0.294317	3E-14		0.01952991	[0.015-0.025] unit increase	Affymetrix [93095623] (imputed)	N
902	chr8	41653539	41653540	rs12550646	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	8p11.21	ANK1	rs12550646-G	0.295	3E-40		0.05217984	[0.044-0.06] unit increase	Affymetrix [~ 2500000] (imputed)	N
902	chr8	41653539	41653540	rs12550646	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	8p11.21	ANK1	rs12550646-G	0.295	2E-42		0.05367122	[0.046-0.061] unit increase	Affymetrix [~ 2500000] (imputed)	N
902	chr8	41658922	41658923	rs1579274	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	8p11.21	NR	rs1579274-G	NR	4E-9		0.0173	[0.012-0.023] unit increase	Affymetrix [9000000] (imputed)	N
902	chr8	41658922	41658923	rs1579274	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	8p11.21	NR	rs1579274-G	NR	2E-52		0.0456	[0.04-0.051] unit decrease	Affymetrix [9000000] (imputed)	N
902	chr8	41659670	41659671	rs113630867	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	8p11.21	ANK1	rs113630867-T	0.292866	3E-23		0.025748923	[0.021-0.031] unit increase	Affymetrix [93095623] (imputed)	N
902	chr8	41659670	41659671	rs113630867	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	8p11.21	ANK1	rs113630867-T	0.292863	3E-26		0.027460236	[0.022-0.033] unit increase	Affymetrix [93095623] (imputed)	N
902	chr8	41659670	41659671	rs113630867	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	8p11.21	ANK1	rs113630867-T	0.292799	4E-71		0.0512225	[0.046-0.057] unit decrease	Affymetrix [93095623] (imputed)	N
902	chr8	41659670	41659671	rs113630867	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	8p11.21	ANK1	rs113630867-T	0.292936	1E-11		0.0300405	[0.026-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
902	chr8	41659670	41659671	rs113630867	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	8p11.21	ANK1	rs113630867-T	0.292998	2E-22		0.0505911	[0.046-0.055] unit increase	Affymetrix [93095623] (imputed)	N
902	chr8	41665953	41665954	rs1819953	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	8p11.21	ANK1	rs1819953-A	0.2901	3E-20		0.03611102	[0.028-0.044] unit decrease	Affymetrix [~ 2500000] (imputed)	N
902	chr8	41673090	41673091	rs999522	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	8p11.21	ANK1	rs999522-C	0.289531	2E-25		0.026669096	[0.022-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
902	chr8	41676155	41676159	rs201710157	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	8p11.21	ANK1	rs201710157-C	0.535769	9E-14		0.022488208	[0.017-0.028] unit increase	Affymetrix [93095623] (imputed)	N
903	chr8	41685165	41685166	rs2111807	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	8p11.21	ANK1	rs2111807-T	0.738073	3E-23		0.031919498	[0.026-0.038] unit increase	Affymetrix [93095623] (imputed)	N
903	chr8	41687827	41687828	rs78480755	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	8p11.21	NR	rs78480755-G	NR	4E-30		0.0717	[0.059-0.084] unit increase	Affymetrix [9000000] (imputed)	N
903	chr8	41723549	41723550	rs13282541	30531941	Doherty A	2018-12-10	Nat Commun	GWAS identifies 14 loci for device-measured physical activity and sleep duration.	Sleep duration	91,105 European ancestry individuals	NA	8p11.21	ANK1	rs13282541-C	0.738823	2E-6		0.02511111	[0.015-0.035] SD units increase	NR [9926106] (imputed)	N
903	chr8	41756898	41756899	rs62508246	30531941	Doherty A	2018-12-10	Nat Commun	GWAS identifies 14 loci for device-measured physical activity and sleep duration.	Sleep duration	91,105 European ancestry individuals	NA	8p11.21	KAT6A	rs62508246-G	0.756	2E-8		0.031	[0.021-0.041] SD units increase	NR [9926106] (imputed)	N
903	chr8	41769332	41769333	rs13249022	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	8p11.21		rs13249022-?	NR	6E-9				NR [~ 8900000] (imputed)	N
904	chr8	41901866	41901867	rs12543005	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	8p11.21	NR	rs12543005-A	NR	1E-9		0.0269	[0.018-0.036] unit increase	Affymetrix [9000000] (imputed)	N
905	chr8	41987883	41987884	rs113060680	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	8p11.21	AP3M2	rs113060680-T	0.1172	2E-10		1.078	NR	Affymetrix [9154080] (imputed)	N
905	chr8	42020157	42020158	rs77346091	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PLAT	5,361 Icelandic ancestry individuals	NA	8p11.21		rs77346091-C	0.03236	4E-18		0.463113	[0.36-0.57] unit decrease	Illumina [7506463] (imputed)	N
905	chr8	42020157	42020158	rs77346091	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	8p11.21	PLAT	rs77346091-T	0.973125	1E-12	(PLAT, 2212_69_1)	0.54916763	[0.4-0.7] unit increase	Illumina [> 1000000] (imputed)	N
905	chr8	42033518	42033519	rs1804182	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	8p11.21	PLAT	rs1804182-?	NR	3E-8	(AA)	1.94	[1.53-2.45]	Illumina [at least 5000000] (imputed)	N
905	chr8	42044964	42044965	rs2020921	24578379	Huang J	2014-02-27	Arterioscler Thromb Vasc Biol	Genome-wide association study for circulating tissue plasminogen activator levels and functional follow-up implicates endothelial STXBP5 and STX2.	Plasma plasminogen activator levels	26,217 European ancestry individuals, 712 Orcadian individuals	4,487 European ancestry individuals	8p11.21	PLAT	rs2020921-G	0.95	2E-8		0.067	[0.043-0.091] unit increase	Affymetrix, Illumina [2455857] (imputed)	N
905	chr8	42045932	42045933	rs2070711	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	8p11.21		rs2070711-?	NR	9E-8				NR [~ 8900000] (imputed)	N
906	chr8	42104239	42104240	rs117627999	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	8p11.21	NR	rs117627999-T	0.083	2E-8		0.827	[0.76-0.89]	Illumina [11270530] (imputed)	N
906	chr8	42205079	42205080	rs3136739	24578379	Huang J	2014-02-27	Arterioscler Thromb Vasc Biol	Genome-wide association study for circulating tissue plasminogen activator levels and functional follow-up implicates endothelial STXBP5 and STX2.	Plasma plasminogen activator levels	26,217 European ancestry individuals, 712 Orcadian individuals	4,487 European ancestry individuals	8p11.21	POLB	rs3136739-A	0.95	1E-9		0.063	[0.043-0.083] unit increase	Affymetrix, Illumina [2455857] (imputed)	N
907	chr8	42226804	42226805	rs3136797	30134803	Matana A	2018-04-11	Mol Med	Genome-wide meta-analysis identifies novel loci associated with parathyroid hormone level.	Plasma parathyroid hormone levels	806 Korculan (founder/genetic isolate) individuals, 831 Vis (founder/genetic isolate) individuals, 959 Croatian ancestry individuals	NA	8p11.21	POLB	rs3136797-C	0.98	3E-6		0.57	[0.33-0.81] unit increase	Illumina [7411206] (imputed)	N
907	chr8	42324764	42324765	rs2978456	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	8p11.21		rs2978456-C	NR	2E-10		0.012	[0.0083-0.0157] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
907	chr8	42324764	42324765	rs2978456	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	8p11.21		rs2978456-C	NR	1E-14		0.014	[0.01-0.018] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
907	chr8	42324764	42324765	rs2978456	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	8p11.21		rs2978456-?	NR	1E-12				NR [~ 8900000] (imputed)	N
907	chr8	42324764	42324765	rs2978456	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	8p11.21	SLC20A2	rs2978456-C	0.5473	2E-12		0.1907	[0.14-0.24] mmHg decrease	Affymetrix [NR] (imputed)	N
907	chr8	42324764	42324765	rs2978456	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Pulse pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	8p11.21	SLC20A2	rs2978456-T	0.55	1E-8		0.188	[0.13-0.25] unit decrease	Affymetrix [~ 9800000] (imputed)	N
907	chr8	42332640	42332640	rs77258375	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	8p11.21	NR	rs77258375-CT	NR	1E-9		0.0153	[0.01-0.02] unit decrease	Affymetrix [9000000] (imputed)	N
907	chr8	42334510	42334511	rs12543287	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	8p11.21		rs12543287-C	NR	4E-10		0.0115	[0.008-0.015] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
907	chr8	42334510	42334511	rs12543287	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	8p11.21	NR	rs12543287-C	0.370868	1E-10		0.019905	[0.014-0.026] unit increase	Affymetrix [16577313] (imputed)	N
907	chr8	42334510	42334511	rs12543287	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	8p11.21	NR	rs12543287-C	0.371444	2E-37		0.0104175	[0.0087-0.0121] unit increase	Affymetrix [16582909] (imputed)	N
907	chr8	42334510	42334511	rs12543287	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	8p11.21	NR	rs12543287-C	0.37201700000000004	2E-18		0.0105474	[0.008-0.0131] unit increase	Affymetrix [16585854] (imputed)	N
907	chr8	42334510	42334511	rs12543287	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	8p11.21	NR	rs12543287-C	0.37087099999999995	3E-21		0.010448	[0.0081-0.0128] unit increase	Affymetrix [16582621] (imputed)	N
907	chr8	42334510	42334511	rs12543287	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	8p11.21	NR	rs12543287-C	0.371444	2E-30		0.0106142	[0.0087-0.0125] unit increase	Affymetrix [16582965] (imputed)	N
907	chr8	42334510	42334511	rs12543287	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	8p11.21	NR	rs12543287-C	0.37201700000000004	4E-14		0.0105562	[0.0077-0.0135] unit increase	Affymetrix [16585866] (imputed)	N
907	chr8	42334510	42334511	rs12543287	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	8p11.21	NR	rs12543287-C	0.37087099999999995	2E-18		0.0106061	[0.0081-0.0131] unit increase	Affymetrix [16582614] (imputed)	N
908	chr8	42344237	42344238	rs4368963	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	121,047 East Asian ancestry individuals	NA	8p11.21	NR	rs4368963-G	0.627916	2E-10		0.026713	[0.018-0.035] SD units decrease	Affymetrix, Illumina [16286195] (imputed)	N
908	chr8	42344237	42344238	rs4368963	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular volume	108,256 Japanese ancestry individuals	NA	8p11.21	SLC20A2	rs4368963-?	NR	1E-9		0.02648	[0.018-0.035] unit increase novel	Illumina [6108953] (imputed)	N
908	chr8	42351175	42351176	rs6988165	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	8p11.21	SLC20A2	rs6988165-C	0.573	4E-12		0.0132	[0.0095-0.0169] unit increase	Affymetrix [18391927] (imputed)	N
908	chr8	42351584	42351585	rs10958717	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	8p11.21	SLC20A2	rs10958717-G		1E-10		0.168	unit decrease	Affymetrix [at least 2696785] (imputed)	N
908	chr8	42352006	42352007	rs9643888	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	8p11.21	Intergenic	rs9643888-T	0.6048	3E-16	(MTAG)	0.0109	[0.0084-0.0134] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
908	chr8	42363230	42363231	rs7823700	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	8p11.21		rs7823700-T	0.0987	4E-8		0.0132	[0.0085-0.0179] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
908	chr8	42367067	42367068	rs6474401	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	8p11.21	SLC20A2	rs6474401-C	0.385802	4E-14		0.017197173	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
908	chr8	42367067	42367068	rs6474401	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8p11.21	NR	rs6474401-C	0.409742	3E-39				Affymetrix, Illumina [24653286] (imputed)	N
908	chr8	42367067	42367068	rs6474401	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	8p11.21	NR	rs6474401-C	0.384765	4E-41		0.025482	[0.022-0.029] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
908	chr8	42367289	42367290	rs55881007	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	8p11.21		rs55881007-G	NR	6E-26		0.0204	[0.017-0.024] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
908	chr8	42367289	42367290	rs55881007	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	8p11.21		rs55881007-G	NR	3E-10		0.0125	[0.0086-0.0164] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
908	chr8	42367289	42367290	rs55881007	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	8p11.21	NR	rs55881007-G	0.384871	9E-41		0.025426	[0.022-0.029] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
908	chr8	42382221	42382222	rs2923424	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	8p11.21	NR	rs2923424-A	0.397614	4E-10		0.044722576	[0.031-0.059] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
908	chr8	42382221	42382222	rs2923424	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	8p11.21		rs2923424-A	0.6069	6E-17		0.012	[0.0093-0.0147] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
908	chr8	42382522	42382522	rs35081913	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	8p11.21	SLC20A2	rs35081913-GA	0.380243	3E-31		0.02672766	[0.022-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
908	chr8	42383083	42383084	rs6980507	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	8p11.21	SLC20A2	rs6980507-A	0.3998	8E-20		0.0109	[0.0084-0.0134] unit increase	Affymetrix, Illumina [33811881] (imputed)	N
908	chr8	42383083	42383084	rs6980507	28898252	Wheeler E	2017-09-12	PLoS Med	Impact of common genetic determinants of Hemoglobin A1c on type 2 diabetes risk and diagnosis in ancestrally diverse populations: A transethnic genome-wide meta-analysis.	Glycated hemoglobin levels	88,355 European ancestry individuals	NA	8p11.21	SLC20A2	rs6980507-A	0.4014	4E-8		0.0097	[0.0062-0.0132] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
908	chr8	42385747	42385748	rs2923427	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	8p11.21	SLC20A2	rs2923427-C	0.5918	1E-19		0.0325949	[0.026-0.04] unit decrease	Affymetrix [~ 2500000] (imputed)	N
908	chr8	42392941	42392942	rs1901282	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin concentration	108,728 Japanese ancestry individuals	NA	8p11.21	SLC20A2	rs1901282-?	NR	1E-22		0.04239	[0.034-0.051] unit increase novel	Illumina [6108953] (imputed)	N
908	chr8	42399660	42399660	rs765636365	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	135,482 East Asian ancestry individuals	NA	8p11.21		rs765636365-GCA	0.390193	3E-30		0.0421687	[0.035-0.049] unit increase	Illumina [13477028] (imputed)	N
908	chr8	42399666	42399667	rs56267269	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	8p11.21	SMIM19	rs56267269-T	0.58915	1E-33		0.027205039	[0.023-0.032] unit increase	Affymetrix [93095623] (imputed)	N
908	chr8	42399666	42399667	rs56267269	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	126,151 East Asian ancestry individuals	NA	8p11.21	NR	rs56267269-C	0.611771	3E-27		0.044291	[0.036-0.052] SD units decrease	Affymetrix, Illumina [16289083] (imputed)	N
908	chr8	42406454	42406455	rs35606576	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	8p11.21		rs35606576-C	NR	1E-27		0.0232	[0.019-0.027] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
908	chr8	42424723	42424724	rs2974322	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (min-P)	26,502 European ancestry individuals	NA	8p11.21	KIF26B	rs2974322-?		8E-10				NR [7428630] (imputed)	N
908	chr8	42424723	42424724	rs2974322	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (min-P)	26,502 European ancestry individuals	NA	8p11.21	NR	rs2974322-?		3E-9				NR [7428630] (imputed)	N
908	chr8	42424745	42424746	rs1343874	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8p11.21	NR	rs1343874-T	0.588922	1E-13				Affymetrix, Illumina [22063850] (imputed)	N
908	chr8	42425398	42425399	rs2923437	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8p11.21	NR	rs2923437-C	0.552955	1E-57				Affymetrix, Illumina [24246363] (imputed)	N
908	chr8	42429443	42429444	rs116922607	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	8p11.21		rs116922607-?	NR	7E-9				NR [~ 8900000] (imputed)	N
908	chr8	42429483	42429484	rs2923440	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DNAJB12	5,358 Icelandic ancestry individuals	NA	8p11.21		rs2923440-A	0.3543	2E-13		0.136735	[0.1-0.17] unit decrease	Illumina [7506463] (imputed)	N
908	chr8	42431767	42431768	rs2974366	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	8p11.21		rs2974366-?	NR	7E-12				NR [~ 8900000] (imputed)	N
908	chr8	42433985	42433986	rs34658409	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	8p11.21		rs34658409-TC	0.588215	2E-64		0.0387972	[0.034-0.043] unit increase	Affymetrix [93095623] (imputed)	N
908	chr8	42433985	42433986	rs34658409	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin concentration	172,851 European ancestry individuals	NA	8p11.21	intergenic	rs34658409-T	0.5874	5E-51		0.05268437	[0.046-0.06] unit increase	Affymetrix [~ 2500000] (imputed)	N
908	chr8	42438615	42438616	rs62509329	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	8p11.21	SLC20A2, SMIM19	rs62509329-?		5E-11				NR [7428630] (imputed)	N
908	chr8	42439847	42439848	rs2923447	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	8p11.21	NR	rs2923447-?	NR	4E-8	(left pallidum)			NR [9227495] (imputed)	N
908	chr8	42439847	42439848	rs2923447	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	8p11.21	NR	rs2923447-?	NR	2E-8	(right pallidum)			NR [9227495] (imputed)	N
908	chr8	42439847	42439848	rs2923447	31636452	Satizabal CL	2019-10-21	Nat Genet	Genetic architecture of subcortical brain structures in 38,851 individuals.	Pallidum volume	34,413 European ancestry individuals	341 South East and East Asian ancestry individuals, 769 African American individuals	8p11.21	NR	rs2923447-T	0.5912	4E-15		7.869	NR z score increase	Affymetrix, Illumina [NR] (imputed)	N
908	chr8	42442017	42442018	rs13253502	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking behaviour (cigarettes smoked per day)	up to 377,334 European ancestry individuals	NA	8p11.21	NR	rs13253502-A	0.407	2E-8	(Conditioned on chr8:42578059)	0.013842282	[0.009-0.0187] unit decrease	NR [~ 10000000] (imputed)	N
908	chr8	42445399	42445400	rs2923402	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	8p11.21	ROBO2	rs2923402-?		9E-16				NR [7428630] (imputed)	N
908	chr8	42447747	42447748	rs2923403	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	8p11.21		rs2923403-G	0.407	2E-20		0.1	[0.08-0.13] % increase	Affymetrix [NR] (imputed)	N
908	chr8	42447747	42447748	rs2923403	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8p11.21	NR	rs2923403-T	0.568402	7E-38				Affymetrix, Illumina [24332387] (imputed)	N
908	chr8	42447747	42447748	rs2923403	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	8p11.21		rs2923403-?	NR	3E-39				NR [~ 8900000] (imputed)	N
908	chr8	42449967	42449968	rs2923407	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	8p11.21		rs2923407-T	0.547	3E-12		0.009	[0.007-0.011] unit increase	NR [NR] (imputed)	N
908	chr8	42449967	42449968	rs2923407	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	8p11.21	SMIM19	rs2923407-T	0.546386	1E-10		0.0137873	[0.0096-0.018] unit decrease	NR [16516521] (imputed)	N
908	chr8	42454010	42454011	rs1349471	28453575	Hodonsky CJ	2017-04-28	PLoS Genet	Genome-wide association study of red blood cell traits in Hispanics/Latinos: The Hispanic Community Health Study/Study of Latinos.	Mean corpuscular hemoglobin concentration	12,502 Hispanic/Latino individuals	4,772 Hispanic/Latino individuals	8p11.21	SMIM19	rs1349471-C	0.44	3E-11		0.11	[0.071-0.149] g/dL decrease	Illumina [27801688] (imputed)	N
908	chr8	42455205	42455206	rs2923411	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	8p11.21	SLC20A2, SMIM19	rs2923411-T		8E-26		0.023	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
908	chr8	42455205	42455206	rs2923411	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	8p11.21	intergenic	rs2923411-C	0.5932	8E-12		0.02472459	[0.018-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
908	chr8	42455205	42455206	rs2923411	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	8p11.21	intergenic	rs2923411-C	0.5933	3E-12		0.02516068	[0.018-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
908	chr8	42455352	42455353	rs10109400	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	8p11.21		rs10109400-C	0.594404	2E-21		0.024096	[0.02-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
908	chr8	42455845	42455846	rs2974312	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	8p11.21		rs2974312-?	NR	5E-12				NR [~ 8900000] (imputed)	N
908	chr8	42457042	42457043	rs2974314	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	8p11.21		rs2974314-T	0.595257	7E-15		0.017587215	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
908	chr8	42457449	42457450	rs6987853	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Mean corpuscular hemoglobin concentration	3,750 African American individuals, 15,522 Hispanic/Latino individuals, 128 Asian ancestry individuals, 20 Native American ancestry individuals, 383 individuals	NA	8p11.21	NR	rs6987853-?	NR	2E-7		0.07142303	[0.044-0.099] unit increase	Illumina [27815891] (imputed)	N
908	chr8	42457449	42457450	rs6987853	28453575	Hodonsky CJ	2017-04-28	PLoS Genet	Genome-wide association study of red blood cell traits in Hispanics/Latinos: The Hispanic Community Health Study/Study of Latinos.	Mean corpuscular hemoglobin concentration	12,502 Hispanic/Latino individuals	4,772 Hispanic/Latino individuals	8p11.21	C8orf40	rs6987853-C	0.66	5E-7		0.09	[0.055-0.125] g/dL increase	Illumina [27801688] (imputed)	N
909	chr8	42472273	42472274	rs7016086	27694959	Bonder MJ	2016-10-03	Nat Genet	The effect of host genetics on the gut microbiome.	Gut microbiota (functional units)	984 European ancestry individuals	530 European ancestry individuals	8p11.21	SMIM19	rs7016086-C	NR	4E-8	(PWY-5873_ubiquinol-7_biosynthesis_(eukaryotic))	5.47637	NR Z-score decrease	Illumina [8100000] (imputed)	N
909	chr8	42515930	42515931	rs7459609	28957384	Kim SK	2017-09-28	PLoS One	Two genetic loci associated with ankle injury.	Ankle injury	1,421 European ancestry cases, 154 Hispanic/Latino cases, 121 East Asian ancestry cases, 81,843 European ancestry controls, 8,406 Hispanic/Latino controls, 7,397 East Asian ancestry controls	NA	8p11.21	NR	rs7459609-T	NR	8E-7		1.3844		Affymetrix [8183964] (imputed)	N
909	chr8	42527385	42527386	rs11785369	31294817	Chen J	2019-07-11	Nicotine Tob Res	Genome-Wide Meta-Analyses of FTND and TTFC Phenotypes.	Time to smoke first cigarette in the morning	18,567 European ancestry individuals	10,061 European ancestry individuals	8p11.21	CHRNB3	rs11785369-A		8E-9		0.08	[0.06-0.1] unit increase	Affymetrix, Illumina [NR] (imputed)	N
909	chr8	42546710	42546711	rs1451240	22524403	Rice JP	2012-04-24	Addiction	CHRNB3 is more strongly associated with Fagerstrom test for cigarette dependence-based nicotine dependence than cigarettes per day: phenotype definition changes genome-wide association studies results.	Nicotine dependence	2,267 European ancestry individuals, 99 Hispanic individuals, 999 African American individuals	835 individuals	8p11.21	CHRNB3	rs1451240-?	NR	7E-16				Illumina [948658]	N
909	chr8	42550497	42550498	rs6474412	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking behaviour (cigarettes smoked per day)	up to 153,918 European ancestry individuals	NA	8p11.21	CHRNB3	rs6474412-T	0.775	3E-16		0.0352	[0.027-0.044] unit increase	Illumina [~ 250000] (imputed)	N
909	chr8	42550497	42550498	rs6474412	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking behaviour (cigarette pack-years)	up to 150,993 European ancestry individuals	NA	8p11.21	CHRNB3	rs6474412-T	0.77	1E-15		0.0319	[0.024-0.04] unit increase	Illumina [~ 250000] (imputed)	N
909	chr8	42550497	42550498	rs6474412	30617275	Erzurumluoglu AM	2019-01-07	Mol Psychiatry	Meta-analysis of up to 622,409 individuals identifies 40 novel smoking behaviour associated genetic loci.	Smoking behaviour (cigarettes smoked per day)	128,746 European and South Asian ancestry individuals	up to 275,596 European ancestry individuals	8p11.21	CHRNB3	rs6474412-T	NR	2E-21		0.043	[0.031-0.055] unit increase (replication)	Affymetrix, Illumina [up to 1207583] (imputed)	N
909	chr8	42550497	42550498	rs6474412	20418888	Thorgeirsson TE	2010-04-25	Nat Genet	Sequence variants at CHRNB3-CHRNA6 and CYP2A6 affect smoking behavior.	Smoking behavior	31,266 European ancestry individuals	54,731 European ancestry individuals	8p11.21	CHRNB3, CHRNA6	rs6474412-T	0.78	1E-8		0.29	[0.19-0.39] CPD increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
909	chr8	42552632	42552633	rs4950	33144568	Quach BC	2020-11-03	Nat Commun	Expanding the genetic architecture of nicotine dependence and its shared genetics with multiple traits.	Nicotine dependence	46,213 European ancestry individuals, 11,787 African American individuals	31,854 European ancestry individuals, 1,937 individuals	8p11.21	CHRNB3	rs4950-A	NR	2E-9		0.022	[0.015-0.029] unit increase	Affymetrix, Illumina [NR] (imputed)	N
909	chr8	42578058	42578059	rs4236926	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking behaviour (cigarettes smoked per day)	up to 377,334 European ancestry individuals	NA	8p11.21	NR	rs4236926-G	0.766	8E-33		0.034267057	[0.029-0.04] unit increase	NR [~ 10000000] (imputed)	N
909	chr8	42584278	42584279	rs7459838	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Cigarettes smoked per day (MTAG)	up to 403,928 European ancestry individuals	NA	8p11.21	NR	rs7459838-A	0.766	1E-32		0.0308344	[0.026-0.036] unit increase	NR [9732723] (imputed)	N
909	chr8	42589601	42589602	rs55828312	26440539	Hancock DB	2015-10-06	Transl Psychiatry	Genome-wide meta-analysis reveals common splice site acceptor variant in CHRNA4 associated with nicotine dependence.	Nicotine dependence	9,137 European ancestry mild cases, 4,881 European ancestry moderate cases, 3,056 European ancestry severe cases	2,662 European ancestry mild cases, 3,044 European ancestry moderate cases, 1,763 European ancestry severe cases	8p11.21	CHRNA6, CHRNB3	rs55828312-G	0.22	1E-6		0.034	[NR] unit decrease	Illumina [8548225] (imputed)	N
910	chr8	42602667	42602668	rs60749569	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking cessation (MTAG)	up to 820,192 European ancestry individuals	NA	8p11.21	NR	rs60749569-T	0.0796	8E-13		0.0208199	[0.015-0.027] unit decrease	NR [9732723] (imputed)	N
910	chr8	42602667	42602668	rs60749569	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking cessation	up to 547,219 European ancestry individuals	NA	8p11.21	NR	rs60749569-T	0.0796	3E-8		0.04007128	[0.026-0.054] unit decrease	NR [~ 10000000] (imputed)	N
910	chr8	42658180	42658181	rs9772809	26545240	Giri A	2015-11-06	PLoS One	Genetic Determinants of Pelvic Organ Prolapse among African American and Hispanic Women in the Women's Health Initiative.	Pelvic organ prolapse (moderate/severe)	154 African American cases, 948 African American controls, 163 Hispanic cases, 305 Hispanic controls	NA	8p11.21	CHRNA6, CHRNB3, THAP1	rs9772809-T	0.07	2E-7	(AA)	5.0	[2.78-9.09]	Affymetrix [at least 730985] (imputed)	N
912	chr8	42947480	42947480	rs1030303249	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8p11.21	NR	rs1030303249-C	0.02265	8E-9	(CYP2E1)	0.3544	NR unit increase	Illumina [1671387] (imputed)	N
912	chr8	42970938	42970939	rs4345607	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8p11.21	HGSNAT	rs4345607-?	NR	8E-6	(CE 18:3)	0.17647858	[0.099-0.254] unit increase	Affymetrix [at least 2500000] (imputed)	N
912	chr8	42981399	42981400	rs117281273	33045005	Vogelezang S	2020-10-12	PLoS Genet	Novel loci for childhood body mass index and shared heritability with adult cardiometabolic traits.	Childhood body mass index	39,620 European ancestry individuals	NA	8p11.21	SGK196	rs117281273-C	0.97	2E-7		0.128	[0.079-0.177] unit increase	Affymetrix, Illumina [8227808] (imputed)	N
913	chr8	43071837	43071838	rs35894137	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		8p11.1	HGSNAT	rs35894137-C	0.919131	2E-8		0.014227	[0.0093-0.0192] unit increase	Affymetrix [12370749]	N
914	chr8	43194687	43194688	rs113060148	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8p11.1	NR	rs113060148-C	0.01045	1E-11	(LIPA)	0.03967	NR unit increase	Illumina [1671387] (imputed)	N
914	chr8	43210011	43210012	rs117631366	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	8p11.1		rs117631366-?	NR	1E-11				NR [~ 8900000] (imputed)	N
914	chr8	43222915	43222916	rs117148746	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8p11.1	NR	rs117148746-A	0.0230006	3E-14				Affymetrix, Illumina [23467995] (imputed)	N
915	chr8	43365128	43365129	rs115090348	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8p11.1	NR	rs115090348-T	0.0122	5E-9	(SUCLA2)	0.1794	NR unit increase	Illumina [1671387] (imputed)	N
916	chr8	43412320	43412321	rs145097765	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	8p11.1		rs145097765-G	NR	8E-14		0.0657	[0.048-0.083] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
916	chr8	43447234	43447235	rs7463498	30995994	Truong DT	2019-04-17	J Med Genet	Multivariate genome-wide association study of rapid automatised naming and rapid alternating stimulus in Hispanic American and African-American youth.	Latent naming speed	883 Hispanic American children, 441 African American children	NA	8p11.1	intergenic	rs7463498-G	NR	1E-6		4.896	NR z score increase	Illumina [1265623]	N
916	chr8	43480778	43480779	rs116482258	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Small vessel stroke	333 Indian ancestry cases, 2,154 Indian ancestry controls	NA	8p11.1		rs116482258-?	NR	4E-6		1.1068896	[1.06002474563433-1.15582642846409]	Illumina [7827597] (imputed)	N
916	chr8	43508915	43508916	rs117182261	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	8p11.1	NR	rs117182261-G	0.973605	5E-16		0.053579	[0.041-0.067] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
916	chr8	43508915	43508916	rs117182261	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8p11.1	NR	rs117182261-G	0.974396	1E-11				Affymetrix, Illumina [19905671] (imputed)	N
916	chr8	43508915	43508916	rs117182261	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	8p11.1	NR	rs117182261-G	0.97358	1E-11		0.047197	[0.034-0.061] SD unit increase	Affymetrix, Illumina [50036608] (imputed)	N
917	chr8	43586239	43586240	rs8188533	30995994	Truong DT	2019-04-17	J Med Genet	Multivariate genome-wide association study of rapid automatised naming and rapid alternating stimulus in Hispanic American and African-American youth.	Latent naming speed	883 Hispanic American children, 441 African American children	NA	8p11.1	intergenic	rs8188533-T	NR	6E-7		4.976	NR z score decrease	Illumina [1265623]	N
918	chr8	43668211	43668212	rs77882887	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	8p11.1	NR	rs77882887-C	0.096717	5E-11		0.023058	[0.016-0.03] SD unit increase	Affymetrix, Illumina [50282193] (imputed)	N
918	chr8	43695233	43695234	rs58810682	22952603	Hart AB	2012-08-28	PLoS One	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 10 individuals	NA	8p11.1	intergenic	rs58810682-?	NR	8E-6	(SF9)			Affymetrix [5476100] (imputed)	N
918	chr8	43756796	43756797	rs113046074	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	8p11.1		rs113046074-G	NR	1E-12		0.0278	[0.02-0.035] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
918	chr8	43756796	43756797	rs113046074	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8p11.1	NR	rs113046074-G	0.108224	6E-17				Affymetrix, Illumina [24246363] (imputed)	N
918	chr8	43756796	43756797	rs113046074	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	8p11.1	NR	rs113046074-G	0.109662	1E-19		0.029477	[0.023-0.036] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
919	chr8	43789767	43789768	rs367705866	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	8p11.1		rs367705866-T	NR	6E-11		0.0384	[0.027-0.05] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
919	chr8	43789767	43789768	rs367705866	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8p11.1	NR	rs367705866-T	0.0245324	5E-13				Affymetrix, Illumina [19872809] (imputed)	N
919	chr8	43789767	43789768	rs367705866	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	8p11.1	NR	rs367705866-T	0.025271	2E-14		0.051776	[0.038-0.065] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
919	chr8	43792570	43792571	rs10958800	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	8p11.1		rs10958800-T	NR	2E-9		0.0145	[0.0098-0.0192] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
919	chr8	43826320	43826321	rs78134181	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8p11.1	NR	rs78134181-C	0.22650700000000001	5E-14				Affymetrix, Illumina [24332387] (imputed)	N
919	chr8	43826320	43826321	rs78134181	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	8p11.1	NR	rs78134181-C	0.223096	1E-15		0.02134	[0.016-0.027] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
942	chr8	46851137	46851138	rs4475487	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	8q11.1		rs4475487-T	0.76896	3E-6		0.038185	[0.022-0.054] unit decrease	Affymetrix [15580782] (imputed)	N
942	chr8	46856889	46856890	rs8188557	30591961	Huang L	2018-12-24	Sci China Life Sci	Genome-wide analysis identified 17 new loci influencing intraocular pressure in Chinese population.	Intraocular pressure	5,571 Chinese ancestry individuals	2,981 Chinese ancestry individuals	8q11.1	LINC00293	rs8188557-G	0.67	2E-11		6.72	NR z score decrease	Illumina [at least 900015] (imputed)	N
942	chr8	46876985	46876986	rs186171583	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	8q11.1		rs186171583-T	0.017994	9E-10		0.053054333	[0.036-0.07] unit decrease	Affymetrix [93095623] (imputed)	N
943	chr8	46942654	46942655	rs72638629	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	8q11.1	NR	rs72638629-G	0.062	9E-6	(IFNGR1_of_CD8p_T)			Illumina [5084123] (imputed)	N
943	chr8	46946625	46946626	rs77583023	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	8q11.1	NR	rs77583023-?	NR	1E-6	(Native Hawaiian)	1.125	[NR] unit increase	Illumina [up to 11892802] (imputed)	N
943	chr8	46998671	46998672	rs1917438	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	8q11.1		rs1917438-A	NR	1E-12		0.0159	[0.012-0.02] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
943	chr8	47052817	47052818	rs76794758	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	8q11.1	NR	rs76794758-?	NR	8E-7	(Native Hawaiian)	1.1364	[NR] unit increase	Illumina [up to 11892802] (imputed)	N
944	chr8	47071976	47071977	rs1119279	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	8q11.1		rs1119279-C	0.903	2E-16		0.15	[0.12-0.19] % increase	Affymetrix [NR] (imputed)	N
945	chr8	47243610	47243611	rs117933211	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	8q11.1	NR	rs117933211-?	NR	3E-6	(Native Hawaiian)	1.0044	[NR] unit increase	Illumina [up to 11892802] (imputed)	N
945	chr8	47286952	47286953	rs149566421	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	8q11.1	NONE, LINC00293	rs149566421-?	NR	6E-9		0.032203108	[0.021-0.043] unit decrease	Illumina [27896057] (imputed)	N
946	chr8	47406615	47406616	rs117044419	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	8q11.1	NR	rs117044419-?	NR	3E-6	(Native Hawaiian)	0.7395	[NR] unit increase	Illumina [up to 11892802] (imputed)	N
946	chr8	47413904	47413905	rs72641081	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	8q11.1	NR	rs72641081-T	0.064	1E-5	(IFNGR1_of_CD8p_T)			Illumina [5084123] (imputed)	N
946	chr8	47418096	47418097	rs118024684	30843173	Popovic M	2019-03-07	J Endocrinol Invest	Genome-wide meta-analysis identifies novel loci associated with free triiodothyronine and thyroid-stimulating hormone.	Thyroxine levels	596 Croatian individuals, 510 Korculan (founder/genetic isolate) individuals, 609 Vis (founder/genetic isolate) individuals	NA	8q11.1	Intergenic	rs118024684-A	0.04	1E-6		0.47	[0.27-0.67] pmol/L decrease	Illumina [7411206] (imputed)	N
946	chr8	47429599	47429600	rs117078022	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	8q11.1		rs117078022-?	NR	3E-17				NR [~ 8900000] (imputed)	N
947	chr8	47516909	47516910	rs7820474	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	8q11.1	intergenic	rs7820474-?	NR	7E-6		0.149	[0.078-0.22] unit increase	Illumina [at least 13000000] (imputed)	N
947	chr8	47521195	47521196	rs34882318	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		ASNSP1	rs34882318-?	NR	1E-11	(male)	3.22561	[NR] unit decrease	Affymetrix [NR] (imputed)	N
947	chr8	47537563	47537564	rs144417742	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q11.1	NR	rs144417742-G	0.0255984	2E-10				Affymetrix, Illumina [19905671] (imputed)	N
950	chr8	47849362	47849363	rs11136097	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	8q11.1		rs11136097-?	NR	1E-16				NR [~ 8900000] (imputed)	N
950	chr8	47854631	47854632	rs186255824	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	8q11.1		rs186255824-?	NR	4E-8				NR [~ 8900000] (imputed)	N
950	chr8	47860346	47860347	rs55848380	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	8q11.1	NR	rs55848380-T	0.642478	2E-10		0.014464	[0.01-0.019] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
950	chr8	47873183	47873184	rs5891232	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	8q11.1		rs5891232-A	0.671704	1E-17		0.020216836	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
950	chr8	47888230	47888231	rs72644513	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	8q11.1	NR	rs72644513-A	0.053	8E-6	(IFNGR1_of_CD8p_T)			Illumina [5084123] (imputed)	N
950	chr8	47923944	47923945	rs2133480	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	8q11.1		rs2133480-A	0.0944120000000001	6E-12		0.026128553	[0.019-0.034] unit increase	Affymetrix [93095623] (imputed)	N
950	chr8	47947700	47947701	rs2287654	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue adjusted for BMI	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	8q11.1	KIAA0146	rs2287654-T	0.88	4E-6	(men)			Affymetrix, Illumina [2500000] (imputed)	N
951	chr8	48036473	48036474	rs183563276	30804558	Grove J	2019-02-25	Nat Genet	Identification of common genetic risk variants for autism spectrum disorder.	Autism spectrum disorder	18,381 European ancestry cases, 27,969 European ancestry controls	2,119 European ancestry cases, 142,379 European ancestry controls	8q11.1	Intergenic	rs183563276-G	0.011	4E-6		1.4265335	[NR]	Illumina [9112387] (imputed)	N
951	chr8	48049655	48049656	rs182428330	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	8q11.1	NR	rs182428330-A	0.05	6E-6	(IFNGR1_of_CD8p_T)			Illumina [5084123] (imputed)	N
952	chr8	48129223	48129224	rs9785104	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PAPLN	5,361 Icelandic ancestry individuals	NA	8q11.21		rs9785104-G	0.01335	4E-12		0.0975415	[0.07-0.125] unit increase	Illumina [7506463] (imputed)	N
953	chr8	48267916	48267917	rs80226431	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	8q11.21		rs80226431-A	0.905	2E-17		0.16	[0.12-0.2] % increase	Affymetrix [NR] (imputed)	N
953	chr8	48270097	48270098	rs72644599	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	8q11.21	SPIDR	rs72644599-C	0.967427	1E-10		0.0332077	[0.023-0.043] unit increase	NR [13737936] (imputed)	N
953	chr8	48270097	48270098	rs72644599	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	8q11.21		rs72644599-?	NR	2E-9				NR [~ 8900000] (imputed)	N
954	chr8	48424428	48424429	rs146121210	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	8q11.21		rs146121210-?	NR	2E-8				NR [~ 8900000] (imputed)	N
954	chr8	48490635	48490636	rs148670213	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	8q11.21		rs148670213-G	0.108251	6E-11		0.0233137	[0.016-0.03] unit decrease	Illumina [13479295] (imputed)	N
955	chr8	48582506	48582507	rs2029239	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	8q11.21	NR	rs2029239-?	NR	5E-6				Illumina [at least 7383741] (imputed)	N
956	chr8	48641191	48641192	rs145718079	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	8q11.21	SPIDR	rs145718079-A	0.00980599999999998	2E-17		0.100638114	[0.077-0.124] unit decrease	Affymetrix [93095623] (imputed)	N
956	chr8	48641191	48641192	rs145718079	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	8q11.21	SPIDR	rs145718079-A	0.00980400000000003	2E-12		0.08327363	[0.06-0.106] unit decrease	Affymetrix [93095623] (imputed)	N
956	chr8	48651632	48651633	rs45577137	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	8q11.21		rs45577137-G	NR	1E-26		0.0635	[0.052-0.075] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
956	chr8	48651632	48651633	rs45577137	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	8q11.21		rs45577137-G	NR	2E-23		0.0451	[0.036-0.054] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
956	chr8	48651632	48651633	rs45577137	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	8q11.21		rs45577137-A	0.955	7E-14				Affymetrix [10369434] (imputed)	N
956	chr8	48651632	48651633	rs45577137	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	8q11.21		rs45577137-A	0.955	2E-8				Affymetrix [10369434] (imputed)	N
956	chr8	48651632	48651633	rs45577137	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	8q11.21	CEBPD	rs45577137-G	0.044793	1E-32		0.067831926	[0.057-0.079] unit increase	Affymetrix [93095623] (imputed)	N
956	chr8	48651632	48651633	rs45577137	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	8q11.21	CEBPD	rs45577137-G	0.044776	8E-12		0.038938954	[0.028-0.05] unit increase	Affymetrix [93095623] (imputed)	N
956	chr8	48651632	48651633	rs45577137	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	8q11.21	CEBPD	rs45577137-G	0.044787	9E-50		0.08478148	[0.074-0.096] unit decrease	Affymetrix [93095623] (imputed)	N
956	chr8	48651632	48651633	rs45577137	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	8q11.21	CEBPD	rs45577137-G	0.044799	1E-34		0.06998176	[0.059-0.081] unit decrease	Affymetrix [93095623] (imputed)	N
956	chr8	48651632	48651633	rs45577137	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	8q11.21	CEBPD	rs45577137-G	0.044807	8E-10		0.034975406	[0.024-0.046] unit decrease	Affymetrix [93095623] (imputed)	N
956	chr8	48651632	48651633	rs45577137	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	8q11.21	CEBPD	rs45577137-G	0.0448	3E-30		0.0655537	[0.054-0.077] unit decrease	Affymetrix [93095623] (imputed)	N
956	chr8	48651632	48651633	rs45577137	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	8q11.21	CEBPD	rs45577137-G	0.044798	3E-26		0.06071452	[0.05-0.072] unit decrease	Affymetrix [93095623] (imputed)	N
956	chr8	48651632	48651633	rs45577137	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	8q11.21	CEBPD	rs45577137-G	0.044773	2E-21		0.054709166	[0.043-0.066] unit decrease	Affymetrix [93095623] (imputed)	N
956	chr8	48651632	48651633	rs45577137	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	8q11.21	CEBPD	rs45577137-G	0.044777	8E-18		0.049471132	[0.038-0.061] unit decrease	Affymetrix [93095623] (imputed)	N
956	chr8	48651632	48651633	rs45577137	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q11.21	NR	rs45577137-G	0.0435077	4E-10				Affymetrix, Illumina [23114412] (imputed)	N
956	chr8	48651632	48651633	rs45577137	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	8q11.21	NR	rs45577137-G	0.04513	3E-12		0.036447	[0.026-0.047] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
956	chr8	48651632	48651633	rs45577137	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q11.21	NR	rs45577137-G	0.0424289	6E-36				Affymetrix, Illumina [23467995] (imputed)	N
956	chr8	48651632	48651633	rs45577137	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	8q11.21	NR	rs45577137-G	0.043857	9E-39		0.064614	[0.055-0.074] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
956	chr8	48651632	48651633	rs45577137	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q11.21	NR	rs45577137-G	0.043822	2E-29				Affymetrix, Illumina [19872809] (imputed)	N
956	chr8	48651632	48651633	rs45577137	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	8q11.21	NR	rs45577137-G	0.045218	5E-31		0.059758	[0.05-0.07] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
956	chr8	48651632	48651633	rs45577137	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q11.21	NR	rs45577137-G	0.0438066	3E-15				Affymetrix, Illumina [19905671] (imputed)	N
956	chr8	48651632	48651633	rs45577137	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	8q11.21	NR	rs45577137-G	0.045208	2E-17		0.045322	[0.035-0.056] SD unit decrease	Affymetrix, Illumina [50036608] (imputed)	N
956	chr8	48651632	48651633	rs45577137	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	8q11.21		rs45577137-?	NR	7E-32				NR [~ 8900000] (imputed)	N
956	chr8	48651632	48651633	rs45577137	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	8q11.21	CEBPD	rs45577137-G	0.0461	3E-13		0.06539299	[0.048-0.083] unit decrease	Affymetrix [~ 2500000] (imputed)	N
956	chr8	48651632	48651633	rs45577137	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	8q11.21	CEBPD	rs45577137-G	0.0461	4E-13		0.06475525	[0.047-0.082] unit increase	Affymetrix [~ 2500000] (imputed)	N
956	chr8	48651632	48651633	rs45577137	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	8q11.21	CEBPD	rs45577137-G	0.046	1E-17		0.076817	[0.059-0.094] unit increase	Affymetrix [~ 2500000] (imputed)	N
956	chr8	48651632	48651633	rs45577137	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	8q11.21	CEBPD	rs45577137-G	0.0461	1E-17		0.07638073	[0.059-0.094] unit decrease	Affymetrix [~ 2500000] (imputed)	N
956	chr8	48651632	48651633	rs45577137	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	8q11.21	CEBPD	rs45577137-G	0.0461	2E-13		0.06552532	[0.048-0.083] unit decrease	Affymetrix [~ 2500000] (imputed)	N
956	chr8	48651632	48651633	rs45577137	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	8q11.21	CEBPD	rs45577137-G	0.046	2E-19		0.08065189	[0.063-0.098] unit increase	Affymetrix [~ 2500000] (imputed)	N
956	chr8	48651632	48651633	rs45577137	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	8q11.21	CEBPD	rs45577137-G	0.0462	9E-14		0.06650413	[0.049-0.084] unit decrease	Affymetrix [~ 2500000] (imputed)	N
956	chr8	48651632	48651633	rs45577137	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	8q11.21	CEBPD	rs45577137-G	0.046	2E-16		0.07389421	[0.056-0.091] unit decrease	Affymetrix [~ 2500000] (imputed)	N
956	chr8	48651632	48651633	rs45577137	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	8q11.21	CEBPD	rs45577137-G	0.0461	6E-13		0.0642749	[0.047-0.082] unit decrease	Affymetrix [~ 2500000] (imputed)	N
956	chr8	48687773	48687774	rs6473736	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	8q11.21	NR	rs6473736-T	0.153187	4E-11		0.019051	[0.013-0.025] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
956	chr8	48734891	48734892	rs79283501	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	8q11.21		rs79283501-C	0.946	2E-11		0.017	[0.011-0.023] unit increase	NR [NR] (imputed)	N
957	chr8	48770701	48770702	rs7003908	29520036	Stein MB	2018-03-08	Mol Psychiatry	Genome-wide analysis of insomnia disorder.	Insomnia	2,297 European American cases, 334 African American cases, 606 Latino American cases, 9,176 European American controls, 2,345 African American controls, 2,893 Latino American controls	NA	8q11.21	PRKDCa	rs7003908-C	NR	5E-7	(AA)	1.5625		Illumina [at least 360704] (imputed)	N
957	chr8	48794170	48794171	rs8178108	34050765	Zhang L	2021-05-29	J Clin Endocrinol Metab	Joint genome-wide association analyses identified 49 novel loci for age at natural menopause.	Age at menopause	181,219 European ancestry individuals	NA	8q11.21		rs8178108-T	0.94	5E-9		0.18	unit decrease	Illumina [2398641] (imputed)	N
957	chr8	48804721	48804722	rs143662847	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		8q11.21	PRKDC	rs143662847-C	0.960337	5E-8		0.0193182	[0.012-0.026] unit increase	Affymetrix [12370749]	N
957	chr8	48806382	48806383	rs74915527	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	349,856 European ancestry individuals, 91,908 East Asian ancestry individuals	NA	8q11.21		rs74915527-T	NR	9E-10		0.021	[0.014-0.028] unit increase	Affymetrix, Illumina [20529536] (imputed)	N
957	chr8	48806382	48806383	rs74915527	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q11.21	NR	rs74915527-T	0.0955905	2E-29				Affymetrix, Illumina [24246363] (imputed)	N
957	chr8	48806382	48806383	rs74915527	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q11.21	NR	rs74915527-T	0.0958151	3E-14				Affymetrix, Illumina [20825802] (imputed)	N
957	chr8	48806382	48806383	rs74915527	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	8q11.21	NR	rs74915527-T	0.097554	5E-16		0.026602	[0.02-0.033] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
957	chr8	48826333	48826334	rs8178058	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	8q11.21	PRKDC	rs8178058-T	0.096503	2E-10		0.023872994	[0.017-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
957	chr8	48852224	48852225	rs8178017	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		PRKDC	rs8178017-?	NR	2E-8	(male)	2.54924	[NR] unit decrease	Affymetrix [NR] (imputed)	N
957	chr8	48858932	48858933	rs4873772	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	8q11.21	NR	rs4873772-?	NR	7E-6				Illumina [at least 7383741] (imputed)	N
957	chr8	48864284	48864288	rs112391082	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	8q11.21		rs112391082-G	NR	2E-9		0.0188	[0.013-0.025] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
957	chr8	48864284	48864288	rs112391082	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	8q11.21	PRKDC	rs112391082-G	0.896653	5E-10		0.022591311	[0.015-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
957	chr8	48885435	48885436	rs762679	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	8q11.21		rs762679-A	NR	4E-19		0.03	[0.023-0.037] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
957	chr8	48885435	48885436	rs762679	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	8q11.21		rs762679-A	NR	7E-9		0.0194	[0.013-0.026] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
957	chr8	48885435	48885436	rs762679	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	8q11.21	MCM4	rs762679-A	0.854459	3E-9		0.01880889	[0.013-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
957	chr8	48885435	48885436	rs762679	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	8q11.21	MCM4	rs762679-A	0.854462	1E-22		0.030741546	[0.025-0.037] unit increase	Affymetrix [93095623] (imputed)	N
957	chr8	48885435	48885436	rs762679	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	8q11.21	MCM4	rs762679-A	0.854443	4E-37		0.040313553	[0.034-0.047] unit increase	Affymetrix [93095623] (imputed)	N
957	chr8	48885435	48885436	rs762679	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	8q11.21	MCM4	rs762679-A	0.854423	4E-18		0.0307375	[0.025-0.036] unit increase	Affymetrix [93095623] (imputed)	N
957	chr8	48885435	48885436	rs762679	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	8q11.21	MCM4	rs762679-A	0.854426	2E-11		0.021016803	[0.015-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
957	chr8	48885435	48885436	rs762679	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	8q11.21	MCM4	rs762679-A	0.854421	2E-10		0.02021599	[0.014-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
957	chr8	48885435	48885436	rs762679	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	8q11.21	MCM4	rs762679-A	0.854408	1E-10		0.020299908	[0.014-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
957	chr8	48885435	48885436	rs762679	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q11.21	NR	rs762679-A	0.852465	4E-18				Affymetrix, Illumina [24332387] (imputed)	N
957	chr8	48885435	48885436	rs762679	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	8q11.21	NR	rs762679-A	0.851022	8E-21		0.024457	[0.019-0.03] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
957	chr8	48885435	48885436	rs762679	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	8q11.21	NR	rs762679-A	0.851019	5E-32		0.030288	[0.025-0.035] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
957	chr8	48885435	48885436	rs762679	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	8q11.21		rs762679-?	NR	3E-12				NR [~ 8900000] (imputed)	N
957	chr8	48885435	48885436	rs762679	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	8q11.21		rs762679-?	NR	2E-16				NR [~ 8900000] (imputed)	N
957	chr8	48885435	48885436	rs762679	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	8q11.21	MCM4	rs762679-A	0.8533	2E-10		0.03194922	[0.022-0.042] unit decrease	Affymetrix [~ 2500000] (imputed)	N
957	chr8	48885435	48885436	rs762679	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	8q11.21	MCM4	rs762679-A	0.8534	4E-12		0.03467907	[0.025-0.044] unit increase	Affymetrix [~ 2500000] (imputed)	N
958	chr8	48967106	48967107	rs113440580	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	8q11.21		rs113440580-T	NR	7E-9		0.0724	[0.048-0.097] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
959	chr8	49053164	49053165	rs11778329	21784300	Mick E	2011-07-13	J Am Acad Child Adolesc Psychiatry	Genome-wide association study of the child behavior checklist dysregulation profile.	Attention deficit hyperactivity disorder	341 ADHD case offspring from 339 trios	NA	8q11.21	intergenic	rs11778329-?	NR	7E-6				Illumina [835136]	N
959	chr8	49129241	49129242	rs7011507	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	8q11.21	Intergenic	rs7011507-?		6E-6				Illumina [9725440] (imputed)	N
959	chr8	49129241	49129242	rs7011507	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	8q11.21	NR	rs7011507-G	0.88	6E-8	(EA)	1.1094613		Affymetrix, Illumina [~ 9000000] (imputed)	N
959	chr8	49129241	49129242	rs7011507	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	8q11.21	NR	rs7011507-G	0.88	2E-8	(EA)	1.0882828		Affymetrix, Illumina [~ 9000000] (imputed)	N
960	chr8	49206629	49206630	rs13282134	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	8q11.21	NR	rs13282134-T	0.213161	2E-10		0.0241061	[0.017-0.032] unit decrease	NR [19129689] (imputed)	N
960	chr8	49236714	49236716	rs35148015	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	8q11.21		rs35148015-C	NR	2E-10		0.0138	[0.0095-0.0181] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
960	chr8	49249339	49249340	rs373601708	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	8q11.21	RNU6-295P	rs373601708-T	0.002	4E-6		0.5079	[0.29-0.72] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
960	chr8	49275275	49275276	rs191780890	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	8q11.21	NR	rs191780890-G	0.011857000000000006	2E-8		0.0660169	[0.042-0.09] unit increase	Affymetrix [16585745] (imputed)	N
961	chr8	49309166	49309167	rs6471752	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	8q11.21	LOC101929268	rs6471752-C	0.85047	1E-16		0.021497	[0.016-0.027] unit increase	NR [13737936] (imputed)	N
961	chr8	49309166	49309167	rs6471752	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	8q11.21		rs6471752-?	NR	7E-21				NR [~ 8900000] (imputed)	N
961	chr8	49309166	49309167	rs6471752	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	8q11.21		rs6471752-?	NR	4E-19		0.0248685	[0.019-0.031] unit increase	Affymetrix [20259828] (imputed)	N
961	chr8	49309166	49309167	rs6471752	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	8q11.21	LOC101929268	rs6471752-C	0.846335	2E-11		0.0291821	[0.02-0.038] unit increase	NR [17166351] (imputed)	N
961	chr8	49309166	49309167	rs6471752	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	8q11.21	LOC101929268	rs6471752-C	0.845521	4E-9	(women)	0.0362675	[0.024-0.049] unit increase	NR [17166351] (imputed)	N
961	chr8	49344133	49344134	rs72639025	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	8q11.21		rs72639025-G	0.16	3E-8		5.54	z score increase	Affymetrix [9061022] (imputed)	N
961	chr8	49348959	49348960	rs6984699	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	8q11.21	intergenic	rs6984699-A	0.7413	2E-24		0.022	[0.018-0.026] unit decrease	Affymetrix [18391927] (imputed)	N
961	chr8	49375566	49375567	rs3929448	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	8q11.21	UBE2V2, LOC101929268	rs3929448-?	NR	6E-11		0.02054106	[0.014-0.027] unit increase	Illumina [27896057] (imputed)	N
961	chr8	49384553	49384554	rs931764	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	8q11.21		rs931764-A	NR	3E-8		0.0148	[0.0095-0.0201] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
961	chr8	49387262	49387263	rs937651	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	8q11.21	NR	rs937651-?	NR	6E-13		0.18405	[0.13-0.23] unit increase	Affymetrix [7794483] (imputed)	N
961	chr8	49387262	49387263	rs937651	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	8q11.21	NR	rs937651-?	NR	5E-7	(female)	0.13973	[0.085-0.194] unit increase	Affymetrix [7794483] (imputed)	N
961	chr8	49387262	49387263	rs937651	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	8q11.21	NR	rs937651-?	NR	3E-8	(male)	0.22411	[0.14-0.3] unit increase	Affymetrix [7794483] (imputed)	N
961	chr8	49391482	49391483	rs10089933	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	8q11.21		rs10089933-?	NR	2E-12				NR [~ 8900000] (imputed)	N
961	chr8	49394457	49394458	rs116900969	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 4 levels	252 European ancestry individuals	NA	8q11.21		rs116900969-T	NR	6E-6		4.4262	[2.55-6.3] unit increase	Illumina [NR] (imputed)	N
961	chr8	49413779	49413780	rs6988484	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	8q11.21		rs6988484-C	NR	2E-29		0.0164	[0.013-0.019] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
962	chr8	49415597	49415598	rs72639047	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	8q11.21		rs72639047-A	0.16	5E-9		5.85	z score increase	Affymetrix [9061022] (imputed)	N
962	chr8	49418560	49418561	rs13263338	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	8q11.21		rs13263338-?	NR	2E-40				NR [~ 8900000] (imputed)	N
962	chr8	49435872	49435873	rs71511927	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	8q11.21		rs71511927-?	NR	1E-7				NR [~ 8900000] (imputed)	N
962	chr8	49445257	49445258	rs56252175	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 63)	4,680 European ancestry individuals	3,566 European ancestry individuals	8q11.21		rs56252175-G	0.128448466	2E-9				Illumina [7417619] (imputed)	N
962	chr8	49456790	49456791	rs1976451	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	8q11.21		rs1976451-G	0.133271	3E-9		0.019982256	[0.013-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
962	chr8	49501585	49501586	rs142469837	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	8q11.21	NR	rs142469837-?	NR	7E-10				Illumina [7760689] (imputed)	N
963	chr8	49545584	49545585	rs1905108	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	8q11.21	Intergenic	rs1905108-?	NR	6E-6		1.358	[NR]	Affymetrix [492217] (imputed)	N
963	chr8	49549725	49549726	rs11778724	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	8q11.21	NR	rs11778724-C	0.013124000000000025	2E-8		0.070201	[0.045-0.096] unit increase	Affymetrix [16580851] (imputed)	N
963	chr8	49558017	49558018	rs148037216	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Ovarian cancer	647 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	8q11.21	Intergenic	rs148037216-?		2E-6		3.09	[1.95-4.91]	Illumina [7645193] (imputed)	N
963	chr8	49581766	49581767	rs878995	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	8q11.21		rs878995-?	NR	1E-10				NR [~ 8900000] (imputed)	N
963	chr8	49588462	49588463	rs1473441	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	8q11.21	RP11-770E5.1	rs1473441-A	NR	2E-8		0.0183778	[0.012-0.025] unit decrease	Affymetrix [321788] (imputed)	N
964	chr8	49727708	49727709	rs7831491	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	8q11.21		rs7831491-?	NR	1E-9				NR [~ 8900000] (imputed)	N
964	chr8	49731070	49731071	rs11998047	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,963 Sub-Saharan African ancestry females, 3,931 Sub-Saharan African ancestry males	NA	8q11.21		rs11998047-G	0.92712	1E-5		0.0179284	[0.0083-0.0276] unit decrease	Illumina [7666802] (imputed)	N
965	chr8	49812200	49812201	rs12155623	21658281	Aouizerat BE	2011-06-10	BMC Cardiovasc Disord	GWAS for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease.	Sudden cardiac arrest	88 European ancestry cases, 517 European ancestry controls	NA	8q11.21	EFCAB1	rs12155623-?	0.57	3E-7	(Dominant)	1.14	[1.09-1.20]	Affymetrix [319222]	N
965	chr8	49828724	49828725	rs34236473	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	8q11.21	SNAI2	rs34236473-T	NR	9E-10		0.0200071	[0.014-0.026] unit increase	Affymetrix [323858] (imputed)	N
965	chr8	49884816	49884817	rs17641971	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	8q11.21	SNAI2	rs17641971-T	0.66	3E-22	(glutaroyl carnitine)	0.025	[0.019-0.031] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
966	chr8	49946567	49946568	rs77526294	34854908	Veluchamy A	2021-12-01	JAMA Netw Open	Association of Genetic Variant at Chromosome 12q23.1 With Neuropathic Pain Susceptibility.	Neuropathic pain	4,512 European ancestry cases, 428,489 European ancestry controls	NA	8q11.21		rs77526294-G	0.944	2E-6		1.176	[1.103-1.255]	Affymetrix, Illumina [NR] (imputed)	N
966	chr8	49974739	49974740	rs4873093	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	8q11.21	C8orf22	rs4873093-G	0.40182	9E-11	(glutarylcarnitine (C5-DC))	0.148	[0.1-0.19] unit increase	Illumina [13039987] (imputed)	N
966	chr8	49975745	49975746	rs2385127	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Alanine levels	115,078 European ancestry individuals	NA	8q11.21		rs2385127-G	0.383444	3E-11		0.0280394	[0.02-0.036] unit increase	NR [11722792] (imputed)	N
966	chr8	50024943	50024944	rs10504073	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite ratios	Up to 5,591 European ancestry individuals	Up to 1,767 European ancestry individuals	8q11.21	SNAI2	rs10504073-T	0.54	3E-32	(lysine/glutaroyl carnitine)	0.031	[0.025-0.037] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
967	chr8	50093276	50093277	rs1509086	33232274	Mohammadnejad A	2020-11-24	Aging (Albany NY)	Generalized correlation coefficient for genome-wide association analysis of cognitive ability in twins.	Cognitive function (generalized correlation coefficient)	900 Danish ancestry dizygotic twins, 272 Danish ancestry monozygotic twins	NA	8q11.21	NR	rs1509086-?	NR	2E-7			[NR]	Illumina [5779266] (imputed)	N
967	chr8	50180009	50180010	rs141880917	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Trunk fat mass	3,399 whole genome sequenced individuals, 12,838 European ancestry individuals	10,667 European ancestry individuals	8q11.21	RP11-10H3.1	rs141880917-T	0.0018	8E-6		0.813	[0.46-1.17] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
968	chr8	50225831	50225832	rs79129295	28800603	Arpawong TE	2017-08-11	PLoS One	Genetic variants specific to aging-related verbal memory: Insights from GWASs in a population-based cohort.	Verbal memory performance (immediate recall level)	7,486 European ancestry individuals aged 50 years or older	6,898 European ancestry individuals aged 50 years or older	8q11.21	NR	rs79129295-A	NR	4E-6			NR unit increase	Illumina [at least 1198956] (imputed)	N
971	chr8	50640013	50640014	rs7828021	29559929	Amare AT	2018-03-06	Front Psychiatry	Association of the Polygenic Scores for Personality Traits and Response to Selective Serotonin Reuptake Inhibitors in Patients with Major Depressive Disorder.	Response to SSRI in MDD or openness	865 individuals with SSRI response data, 260,861 individuals with personality trait data	NA	8q11.21	SNTG1	rs7828021-C	NR	7E-8				NR [NR] (imputed)	N
971	chr8	50640013	50640014	rs7828021	29559929	Amare AT	2018-03-06	Front Psychiatry	Association of the Polygenic Scores for Personality Traits and Response to Selective Serotonin Reuptake Inhibitors in Patients with Major Depressive Disorder.	Remission after SSRI treatment in MDD or openness	865 individuals with SSRI response data, 260,861 individuals with personality trait data	NA	8q11.21	SNTG1	rs7828021-C	NR	4E-7				NR [NR] (imputed)	N
973	chr8	50877452	50877453	rs115466365	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	7,894 Sub-Saharan African ancestry individuals	NA	8q11.21		rs115466365-T	0.969914	4E-6		0.0245271	[0.014-0.035] unit decrease	Illumina [13900000] (imputed)	N
973	chr8	50891045	50891046	rs9643689	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	8q11.21	NR	rs9643689-?	NR	1E-7				Affymetrix [NR]	N
973	chr8	50949938	50949939	rs62515375	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	8q11.21	NR	rs62515375-A	0.629	1E-9		0.00679292	[0.0046-0.009] unit decrease	NR [9732723] (imputed)	N
973	chr8	50974318	50974319	rs4873403	25335168	Hashimoto R	2014-10-21	Transl Psychiatry	Common variants at 1p36 are associated with superior frontal gyrus volume.	Superior frontal gyrus grey matter volume	158 Japanese ancestry schizophrenia cases, 378 Japanese ancestry healthy controls	NA	8q11.21	SNTG1	rs4873403-C	0.13	7E-6	(Right superior frontal gyrus)	1048.0	[NR] unit increase	Affymetrix [517946]	N
974	chr8	51028099	51028100	rs203620	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	8q11.21		rs203620-C	0.377	8E-18		0.011	[0.009-0.013] unit increase	NR [NR] (imputed)	N
974	chr8	51071741	51071742	rs1486471	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA		SNTG1	rs1486471-A	0.67	1E-8		0.0071	[0.0046-0.0096] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
975	chr8	51118558	51118559	rs7824756	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	8q11.21	SNTG1	rs7824756-T	0.706234	3E-11		0.0154964	[0.011-0.02] unit increase	NR [16516521] (imputed)	N
975	chr8	51165407	51165408	rs35857674	29077507	Chen H	2017-10-27	Am J Respir Cell Mol Biol	Multi-ethnic Meta-analysis Identifies RAI1 as a Possible Obstructive Sleep Apnea Related Quantitative Trait Locus in Men.	Obstructive sleep apnea trait (apnea hypopnea index)	677 African American women, 544 African American men, 115 Asian women, 113 Asian men, 1,825 European ancestry women, 3,902 European ancestry men,  7,492 Hispanic women, 5,065 Hispanic men	NA	8q11.21	SNTG1	rs35857674-A		8E-7	(women)	0.07	[NR] unit increase	Affymetrix, Illumina [NR] (imputed)	N
975	chr8	51222394	51222395	rs76802275	29678681	Matana A	2018-04-18	Genomics	Genome-wide meta-analysis identifies novel gender specific loci associated with thyroid antibodies level in Croatians.	Plasma anti-thyroglobulin and anti-thyroid peroxidase levels (bivariate analysis)	up to 1,596 Croatian ancestry women, up to 1,033 Croatian ancestry men	NA	8q11.21	SNTG1	rs76802275-?	NR	4E-6		0.011	[0.0063-0.0157] unit decrease	Illumina [5527232] (imputed)	N
976	chr8	51316693	51316694	rs13257851	22205395	Tekola Ayele F	2011-12-29	Immunogenetics	Genome-wide associated loci influencing interleukin (IL)-10, IL-1Ra, and IL-6 levels in African Americans.	Interleukin-6 levels	697 African American individuals	NA	8q11.21	SNTG1	rs13257851-C	0.25	2E-6		0.09	unit increase	Affymetrix [5396780] (imputed)	N
976	chr8	51353134	51353135	rs138176511	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Abstraction and mental flexibility	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	8q11.21	SNTG1	rs138176511-A	NR	1E-6		0.62782246	[0.37-0.89] unit decrease	Illumina [> 6200000] (imputed)	N
977	chr8	51384986	51384987	rs13272236	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	8q11.21	NR	rs13272236-G	0.0367158118323747	6E-7	(IGP45)	0.8377	[0.51-1.17] unit increase	Illumina [~ 2500000] (imputed)	N
977	chr8	51384986	51384987	rs13272236	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	8q11.21	NR	rs13272236-G	0.0365154950657895	2E-6	(IGP5)	0.7872	[0.46-1.11] unit increase	Illumina [~ 2500000] (imputed)	N
977	chr8	51412590	51412591	rs310558	17903307	Wilk JB	2007-09-19	BMC Med Genet	Framingham Heart Study genome-wide association: results for pulmonary function measures.	Pulmonary function	Up to 1,222 individuals	NA	8q11.21	SNTG1	rs310558-?	NR	5E-6	(ppratio)			Affymetrix [70897]	N
978	chr8	51614145	51614146	rs67729017	30898391	Lawrenson K	2019-03-19	Gynecol Oncol	Genome-wide association studies identify susceptibility loci for epithelial ovarian cancer in east Asian women.	Epithelial ovarian cancer	3,238 East Asian ancestry cases, 4,083 East Asian ancestry controls	NA	8q11.21		rs67729017-?	NR	8E-6	(mucinous_all)	2.53		Illumina [11595112] (imputed)	N
979	chr8	51673735	51673736	rs10958099	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	8q11.21		rs10958099-A	NR	2E-14		0.0177	[0.013-0.022] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
979	chr8	51673735	51673736	rs10958099	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	8q11.21		rs10958099-A	NR	7E-9		0.013	[0.0087-0.0173] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
979	chr8	51690822	51690823	rs12547335	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	8q11.21	SNTG1	rs12547335-T	0.2063	4E-10		0.2518	[0.17-0.33] mmHg increase	Affymetrix [NR] (imputed)	N
979	chr8	51734724	51734725	rs12548275	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	8q11.21		rs12548275-T	NR	4E-12		0.0169	[0.012-0.022] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
979	chr8	51743692	51743694	rs79108280	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	8q11.21	NR	rs79108280-GT	0.1889	9E-6	(EA)	0.0356	[0.02-0.051] unit increase	Illumina [~ 11800000] (imputed)	N
980	chr8	51836516	51836517	rs112268296	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Antisaccade task score	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	8q11.21	intergenic	rs112268296-C	NR	6E-6		0.12378338	[0.063-0.185] unit decrease	Illumina [> 6200000] (imputed)	N
981	chr8	51936631	51936632	rs11993898	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	8q11.21	SNTG1, PXDNL	rs11993898-T		4E-11		0.326	unit decrease	Affymetrix [at least 2696785] (imputed)	N
981	chr8	51936631	51936632	rs11993898	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	8q11.21	SNTG1, PXDNL	rs11993898-T		7E-7		0.162	unit decrease	Affymetrix [at least 2696785] (imputed)	N
981	chr8	51936631	51936632	rs11993898	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	8q11.21	SNTG1, PXDNL	rs11993898-T		1E-7		0.159	unit decrease	Affymetrix [at least 2696785] (imputed)	N
981	chr8	51947548	51947549	rs4873492	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	8q11.21		rs4873492-T	NR	9E-9		0.0145	[0.0096-0.0194] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
981	chr8	51947548	51947549	rs4873492	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	8q11.21		rs4873492-?	NR	2E-16				NR [~ 8900000] (imputed)	N
981	chr8	52022342	52022343	rs112843713	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8q11.21	NR	rs112843713-C	0.01045	1E-8	(CES2)	0.3576	NR unit increase	Illumina [1671387] (imputed)	N
982	chr8	52111216	52111217	rs35027875	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Cerebellum cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	8q11.21	NR	rs35027875-?		6E-6				Illumina [4322238] (imputed)	N
983	chr8	52184836	52184837	rs114272670	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8q11.21	NR	rs114272670-T	0.01045	4E-9	(FDXR)	0.03778	NR unit increase	Illumina [1671387] (imputed)	N
983	chr8	52216761	52216762	rs7821565	20694014	Thye T	2010-08-08	Nat Genet	Genome-wide association analyses identifies a susceptibility locus for tuberculosis on chromosome 18q11.2.	Tuberculosis	2,237 Sub-Saharan African ancestry cases, 3,122 Sub-Saharan African ancestry controls	1,462 Sub-Saharan African ancestry cases, 4,604 Sub-Saharan African ancestry controls	8q11.22	NR	rs7821565-?	0.61	8E-6		1.2	[1.11-1.25]	Affymetrix [> 333754] (imputed)	N
983	chr8	52229179	52229180	rs763493224	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	8q11.22	RP11-401H2.1	rs763493224-T	0.0015	8E-7		0.6281	[0.38-0.88] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
983	chr8	52229179	52229180	rs763493224	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	8q11.22	RP11-401H2.1	rs763493224-T	0.0015	8E-7		0.6281	[0.38-0.88] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
983	chr8	52279738	52279739	rs2915495	28447399	Jia P	2017-04-26	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of HIV-associated neurocognitive disorder (HAND): A CHARTER group study.	Neurocognitive impairment in HIV-1 infection (dichotomous)	140 African American cases, 167 European ancestry cases, 53 Hispanic cases, 6 cases, 350 African American controls, 276 European ancestry controls, 46 Hispanic controls, 11 controls	NA	8q11.22	PXDNL	rs2915495-A		8E-6		1.698	[NR]	Affymetrix [NR]	N
983	chr8	52290508	52290509	rs574150472	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	8q11.22	PXDNL	rs574150472-A	0.0067	4E-6		0.4515	[0.26-0.64] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
984	chr8	52300769	52300770	rs62506864	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Neuritic plaque	up to 4,232 individuals	NA	8q11.22	PXDNL	rs62506864-C	0.9691	5E-6	(Ordinal)	1.0201	[0.58-1.46] unit increase	Affymetrix, Illumina [NR] (imputed)	N
984	chr8	52316396	52316397	rs2082278	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	8q11.22	NR	rs2082278-?	NR	5E-8				Illumina [7760689] (imputed)	N
984	chr8	52401600	52401601	rs10095992	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8q11.22	NR	rs10095992-A	0.01045	3E-8	(FDXR)	0.03527	NR unit increase	Illumina [1671387] (imputed)	N
985	chr8	52498384	52498385	rs16916544	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	8q11.22	NR	rs16916544-?	NR	5E-24				Affymetrix [NR]	N
985	chr8	52499273	52499274	rs16916548	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	8q11.22	NR	rs16916548-?	NR	2E-8				Affymetrix [NR]	N
985	chr8	52550580	52550581	rs117942686	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	8q11.22		rs117942686-?	NR	3E-8				NR [~ 8900000] (imputed)	N
986	chr8	52569448	52569449	rs7836565	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	8q11.22	NR	rs7836565-T	0.718	4E-8		0.015508417	[0.01-0.0211] unit decrease	NR [~ 10000000] (imputed)	N
986	chr8	52577587	52577588	rs7007297	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	8q11.22	NR	rs7007297-G	0.718	2E-11		0.00799734	[0.0057-0.0103] unit decrease	NR [9732723] (imputed)	N
986	chr8	52584737	52584738	rs116867275	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 1)	3,566 European ancestry individuals	4,680 European ancestry individuals	8q11.22		rs116867275-C	0.014959074	2E-8				Illumina [7417619] (imputed)	N
986	chr8	52587074	52587075	rs13251959	31926635	Coleman JRI	2019-11-01	Biol Psychiatry	The Genetics of the Mood Disorder Spectrum: Genome-wide Association Analyses of More Than 185,000 Cases and 439,000 Controls.	Bipolar disorder or major depressive disorder	164,933 European ancestry major depressive disorder cases, 20,352 European ancestry bipolar disorder cases, 439,741 European ancestry controls	NA	8q11.22	NR	rs13251959-?	NR	1E-7				NR [NR] (imputed)	N
986	chr8	52599723	52599724	rs144625574	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	8q11.22	NR	rs144625574-?	NR	4E-6		0.4385	[0.25-0.63] unit increase	Illumina [at least 560000] (imputed)	N
986	chr8	52628819	52628820	rs13261618	32830257	Castellucci LC	2020-08-23	Clin Infect Dis	A Genome-Wide Association Study Identifies SERPINB10, CRLF3, STX7, LAMP3, IFNG-AS1 and KRT80 As Risk Loci Contributing to Cutaneous Leishmaniasis In Brazil.	Cutaneous leishmaniasis	2,066 Hispanic/Latino cases, 2,046 Hispanic/Latino controls	NR	8q11.23	PXDNL	rs13261618-A		1E-6		0.868	[0.819-0.919]	Illumina [4498586] (imputed)	N
986	chr8	52646297	52646298	rs4242470	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	8q11.23	PXDNL, PCMTD1	rs4242470-?		3E-8				NR [6786993] (imputed)	N
986	chr8	52663477	52663478	rs6987025	32238385	Nakayama A	2020-04-01	Ann Rheum Dis	Subtype-specific gout susceptibility loci and enrichment of selection pressure on ABCG2 and ALDH2 identified by subtype genome-wide meta-analyses of clinically defined gout patients.	Renal underexcretion gout	654 Japanese ancestry male cases, 4,554 Japanese ancestry male controls	NA	8q11.23	PXDNL	rs6987025-T	0.021	6E-7		2.19	[1.61-2.98]	Illumina [7206774] (imputed)	N
987	chr8	52752957	52752958	rs143086194	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	8q11.23	NR	rs143086194-?	NR	9E-6		0.4236	[0.23-0.61] unit increase	Illumina [at least 560000] (imputed)	N
987	chr8	52782552	52782553	rs7011046	32339537	Roberts V	2020-04-24	J Invest Dermatol	Genome wide association study identifies genetic associations with perceived age.	Youthful appearance (self-reported)	423,992 European ancestry individuals	NA	8q11.23	PCMTD1	rs7011046-C	0.0877402	4E-8		0.95877993	NR	Affymetrix [~ 9600000] (imputed)	N
987	chr8	52806681	52806682	rs9298467	27479909	Hyde CL	2016-08-01	Nat Genet	Identification of 15 genetic loci associated with risk of major depression in individuals of European descent.	Major depressive disorder	84,847 European ancestry cases, 241,266 European ancestry controls	45,773 European ancestry cases, 106,354 European ancestry controls	8q11.23	PCMTD1	rs9298467-T	0.808561	2E-7		0.0383	[0.023-0.054] unit decrease	Illumina [1220000] (imputed)	N
987	chr8	52811757	52811758	rs13263909	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	8q11.23		rs13263909-?	NR	4E-8				NR [~ 8900000] (imputed)	N
988	chr8	52886618	52886619	rs60882754	30846698	Dashti HS	2019-03-07	Nat Commun	Genome-wide association study identifies genetic loci for self-reported habitual sleep duration supported by accelerometer-derived estimates.	Sleep duration (short sleep)	106,192  European ancestry cases, 305,742 European ancestry controls	47,180  adults, 10,554 children or adolescents	8q11.23	PCMTD1, PXDNL	rs60882754-A	NR	2E-8		1.057		NR [14661600] (imputed)	N
988	chr8	52887540	52887541	rs1015213	27064256	Khor CC	2016-04-04	Nat Genet	Genome-wide association study identifies five new susceptibility loci for primary angle closure glaucoma.	Glaucoma (primary angle closure)	5,612 East Asian ancestry cases, 12,451 East Asian ancestry controls, 337 Indian ancestry cases, 2,538 Indian ancestry controls, 576 European ancestry cases, 4,940 European ancestry controls	430 European ancestry cases, 3,133 European ancestry controls, 90 Nepalese ancestry cases, 205 Nepalese ancestry controls, 2,340 East Asian ancestry cases, 3,865 East Asian ancestry controls, 628 South Asian ancestry cases, 552 South Asian ancestry controls, 99 Latin American cases, 224 Latin American controls, 391 Saudi Arabian ancestry cases, 1,659 Saudi Arabian ancestry controls	8q11.23	PCMTD1, ST18	rs1015213-A		5E-16		1.42	[NR]	Illumina [5245080] (imputed)	N
988	chr8	52887540	52887541	rs1015213	27064256	Khor CC	2016-04-04	Nat Genet	Genome-wide association study identifies five new susceptibility loci for primary angle closure glaucoma.	Glaucoma (primary angle closure)	5,612 East Asian ancestry cases, 12,451 East Asian ancestry controls, 337 Indian ancestry cases, 2,538 Indian ancestry controls, 576 European ancestry cases, 4,940 European ancestry controls	430 European ancestry cases, 3,133 European ancestry controls, 90 Nepalese ancestry cases, 205 Nepalese ancestry controls, 2,340 East Asian ancestry cases, 3,865 East Asian ancestry controls, 628 South Asian ancestry cases, 552 South Asian ancestry controls, 99 Latin American cases, 224 Latin American controls, 391 Saudi Arabian ancestry cases, 1,659 Saudi Arabian ancestry controls	8q11.23	PCMTD1, ST18	rs1015213-A		2E-13	(Asian)	1.44	[NR]	Illumina [5245080] (imputed)	N
988	chr8	52887540	52887541	rs1015213	22922875	Vithana EN	2012-08-26	Nat Genet	Genome-wide association analyses identify three new susceptibility loci for primary angle closure glaucoma.	Glaucoma (primary angle closure)	1,281 East Asian ancestry cases, 1,987 East Asian ancestry controls, 337 South Indian ancestry cases, 2,538 South Indian ancestry controls, 236 South East Asian ancestry cases, 5,083 South East Asian ancestry controls	1,545 East Asian ancestry cases, 3,756 East Asian ancestry controls, 165 Saudi Arabian ancestry cases, 175 Saudi Arabian ancestry controls, 127 European ancestry cases, 4,703 European ancestry controls, 80 Indian ancestry cases, 309 Indian ancestry controls	8q11.23	PCMTD1-ST18	rs1015213-A	NR	3E-9		1.5	[NR]	Illumina [493501]	N
989	chr8	52966056	52966057	rs16917161	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8q11.23	PCMTD1	rs16917161-?	NR	9E-6	(trimethylamine N oxide)	0.26165226	[0.15-0.38] unit increase	Affymetrix [at least 2500000] (imputed)	N
989	chr8	53009605	53009606	rs3849810	31553412	Legge SE	2019-09-25	JAMA Psychiatry	Association of Genetic Liability to Psychotic Experiences With Neuropsychotic Disorders and Traits.	Psychotic experience (distressing)	2,143 European ancestry cases, 121,379 European ancestry controls	NA	8q11.23	ST18	rs3849810-A	NR	5E-8		1.22	[1.13-1.31]	Affymetrix [> 7500000] (imputed)	N
989	chr8	53010151	53010152	rs3849811	27021288	Brevik EJ	2016-03-29	Am J Med Genet B Neuropsychiatr Genet	Genome-wide analyses of aggressiveness in attention-deficit hyperactivity disorder.	Oppositional defiant disorder dimensions in attention-deficit hyperactivity disorder	750 European ancestry child cases	NA	8q11.23	ST18	rs3849811-C	NR	3E-6	(Defiant/Vindictive dimension)	1.079	[0.63-1.53] unit increase	Illumina [1871025] (imputed)	N
989	chr8	53010162	53010163	rs3892512	27021288	Brevik EJ	2016-03-29	Am J Med Genet B Neuropsychiatr Genet	Genome-wide analyses of aggressiveness in attention-deficit hyperactivity disorder.	Oppositional defiant disorder dimensions in attention-deficit hyperactivity disorder	750 European ancestry child cases	NA	8q11.23	ST18	rs3892512-G	NR	3E-6	(Defiant/Vindictive dimension)	1.079	[0.63-1.53] unit increase	Illumina [1871025] (imputed)	N
989	chr8	53010529	53010530	rs1895885	27021288	Brevik EJ	2016-03-29	Am J Med Genet B Neuropsychiatr Genet	Genome-wide analyses of aggressiveness in attention-deficit hyperactivity disorder.	Oppositional defiant disorder dimensions in attention-deficit hyperactivity disorder	750 European ancestry child cases	NA	8q11.23	ST18	rs1895885-C	NR	3E-6	(Defiant/Vindictive dimension)	1.079	[0.63-1.53] unit increase	Illumina [1871025] (imputed)	N
989	chr8	53032942	53032943	rs74927455	31049640	Chen J	2019-05-02	Diabetologia	Genome-wide association study of type 2 diabetes in Africa.	Type 2 diabetes	2,633 African ancestry cases, 1,714 African ancestry controls	NA	8q11.23	ST18	rs74927455-G	0.905	5E-6		1.35	[1.19-1.54]	Affymetrix, Illumina [12148595] (imputed)	N
989	chr8	53047026	53047027	rs10109716	33640202	Kim BH	2021-02-03	Neurobiol Aging	Genome-wide association study identifies susceptibility loci of brain atrophy to NFIA and ST18 in Alzheimer's disease.	Left inferior frontal gyrus (orbital part) cortical thickness	919 European ancestry individuals	629 individuals	8q11.23		rs10109716-?	NR	3E-10	(EA)			Illumina [3041429] (imputed)	N
989	chr8	53054417	53054418	rs10088088	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8q11.23	PCMTD1	rs10088088-?	NR	9E-6	(LPC 18:1)	0.34596536	[0.19-0.5] unit decrease	Affymetrix [at least 2500000] (imputed)	N
989	chr8	53055482	53055483	rs7010548	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	8q11.23	NR	rs7010548-?	NR	9E-8		915.1051	NR unit increase	Illumina [2379855]	N
989	chr8	53081550	53081551	rs9792144	29724592	Pottier C	2018-04-30	Lancet Neurol	Potential genetic modifiers of disease risk and age at onset in patients with frontotemporal lobar degeneration and GRN mutations: a genome-wide association study.	Frontotemporal dementia with GRN mutation (age at onset)	382 European ancestry individuals	67 European ancestry individuals	8q11.23	ST18	rs9792144-G	0.14	9E-6		3.62	[2.03-5.22] unit increase	Illumina [7033776] (imputed)	N
989	chr8	53081550	53081551	rs9792144	29724592	Pottier C	2018-04-30	Lancet Neurol	Potential genetic modifiers of disease risk and age at onset in patients with frontotemporal lobar degeneration and GRN mutations: a genome-wide association study.	Frontotemporal dementia (age at onset)	382 European ancestry GRN mutation carrier individuals	67 European ancestry GRN mutation carrier individuals, 143 European ancestry GRN negative individuals	8q11.23	ST18	rs9792144-G	0.18	8E-7		3.78	unit increase	Illumina [7033776] (imputed)	N
990	chr8	53110205	53110206	rs16917430	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	8q11.23	NR	rs16917430-?	NR	9E-35		12.3	NR z score decrease	Illumina [at least 830937] (imputed)	N
990	chr8	53125733	53125734	rs2360806	25628336	Hromatka BS	2015-01-26	Hum Mol Genet	Genetic variants associated with motion sickness point to roles for inner ear development, neurological processes and glucose homeostasis.	Motion sickness	80,494 European ancestry individuals	NA	8q11.23	ST18	rs2360806-C	0.162	7E-11		0.047	[0.033-0.061] unit increase	Illumina [7428049] (imputed)	N
990	chr8	53128628	53128629	rs11988076	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	8q11.23		rs11988076-A	0.8359	2E-11		0.019	[0.013-0.025] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
990	chr8	53128628	53128629	rs11988076	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	8q11.23		rs11988076-?	NR	8E-8				NR [~ 8900000] (imputed)	N
990	chr8	53129068	53129069	rs7845620	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	8q11.23	ST18	rs7845620-C	0.16559999999999997	8E-19		1.0425354		Affymetrix [11880941] (imputed)	N
990	chr8	53129068	53129069	rs7845620	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	8q11.23	ST18	rs7845620-C	0.16559999999999997	8E-19		1.043416		Affymetrix [11880941] (imputed)	N
990	chr8	53135631	53135632	rs62501032	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	8q11.23	ST18	rs62501032-A	0.171	9E-11		0.0102	[0.0071-0.0133] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
990	chr8	53136441	53136442	rs16917522	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Ease of getting up in the morning	385,949 European ancestry individuals	NA	8q11.23	NR	rs16917522-C	0.1827	1E-9		0.0136	[0.0093-0.0179] unit increase	Affymetrix, Illumina [10862568] (imputed)	N
990	chr8	53145697	53145698	rs769066	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	8q11.23		rs769066-?	NR	4E-8				NR [~ 8900000] (imputed)	N
990	chr8	53189621	53189622	rs112400385	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	8q11.23		rs112400385-?	NR	8E-9				NR [~ 8900000] (imputed)	N
990	chr8	53193865	53193866	rs117558878	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (severe respiratory symptoms vs population)	1,128 European ancestry cases, 679,531 European ancestry controls, 245 Hispanic or Latin American cases, 94,237 Hispanic or Latin American controls, 74 Black or African American cases, 22,383 Black or African American controls	NA	8q11.23		rs117558878-?	NR	4E-6		0.5163687	[0.3-0.73] unit decrease	Illumina [9906551] (imputed)	N
990	chr8	53193865	53193866	rs117558878	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (hospitalized covid vs population)	613 European ancestry cases, 680,416 European ancestry controls, 140 Hispanic or Latin American cases, 94,327 Hispanic or Latin American controls, 49 Black or African American cases, 22,410 Black or African American controls	NA	8q11.23		rs117558878-?	NR	5E-7		0.6982616	[0.43-0.97] unit decrease	Illumina [9875426] (imputed)	N
990	chr8	53193865	53193866	rs117558878	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid pneumonia vs population)	1,004 European ancestry cases, 680,354 European ancestry controls, 218 Hispanic or Latin American cases, 94,318 Hispanic or Latin American controls, 64 Black or African American cases, 22,412 Black or African American controls	NA	8q11.23		rs117558878-?	NR	7E-6		0.5279233	[0.3-0.76] unit decrease	Illumina [9901720] (imputed)	N
990	chr8	53214264	53214265	rs7009219	23535033	Sherva R	2013-03-24	Alzheimers Dement	Genome-wide association study of the rate of cognitive decline in Alzheimer's disease.	Alzheimer's disease (cognitive decline)	303 European ancestry cases		8q11.23	ST18	rs7009219-?	0.06	5E-7		0.16	unit decrease	Illumina [NR] (imputed)	N
991	chr8	53243210	53243211	rs10448048	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	8q11.23	Intergenic	rs10448048-A	0.8599	3E-8	(MTAG)	0.0104	[0.0067-0.0141] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
991	chr8	53333699	53333700	rs7465621	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	8q11.23	NR	rs7465621-A		1E-10		0.11	[0.071-0.149] unit increase	NR [NR]	N
991	chr8	53346100	53346101	rs73587339	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Chronic sinus infection	5,291 European ancestry cases, 79,622 European ancestry controls	NA	8q11.23	NR	rs73587339-?	NR	3E-6		0.5123	[0.31-0.71] unit increase	Illumina [at least 560000] (imputed)	N
992	chr8	53362144	53362145	rs284816	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	8q11.23	ST18, FAM150A	rs284816-A	0.1632	6E-13		7.212	[NR] z score decrease	Affymetrix, Illumina [~ 11000000] (imputed)	N
992	chr8	53385817	53385818	rs1371951	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	8q11.23	ST18, FAM150A, RB1CC1, NPBWR1	rs1371951-?		7E-25				Affymetrix, Illumina [NR] (imputed)	N
992	chr8	53418827	53418828	rs7820212	28679651	Meziane I	2017-07-04	Haematologica	Genome-wide association study of clinical parameters in immunoglobulin light chain amyloidosis in three patient cohorts.	Immunoglobulin light chain (AL) amyloidosis (liver involvement)	194 cases, controls	NA	8q11.23	FAM150A, RB1CC1	rs7820212-A	NR	2E-8		1.86	[1.50-2.31]	NR [NR]	N
992	chr8	53422441	53422442	rs551353004	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	225,112 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	445,360 individuals	8q11.23	intergenic	rs551353004-T	7.0E-4	3E-38		22.1523	[18.8-25.51] mmHg increase	Affymetrix [NR] (imputed)	N
993	chr8	53494340	53494341	rs114240537	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels	3,806 African American individuals	NA	8q11.23		rs114240537-?	NR	2E-6		0.3	[0.18-0.42] unit increase	Affymetrix, Illumina [NR] (imputed)	N
994	chr8	53682655	53682656	rs78568881	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	8q11.23		rs78568881-T	0.022513	7E-6		0.10354	[0.059-0.149] unit increase	Affymetrix [15580782] (imputed)	N
994	chr8	53684860	53684861	rs7822058	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	8q11.23	LOC644727	rs7822058-A	0.076	3E-7	(Leptin )	0.04	[NR] ng/mL increase	Illumina [899892]	N
994	chr8	53704895	53704896	rs150387260	30704525	Guyatt AL	2019-01-31	Hum Genomics	A genome-wide association study of mitochondrial DNA copy number in two population-based cohorts.	Mitochondrial DNA copy number (white blood cells)	3,405 European ancestry females, 1,338 females	NA	8q11.23	RB1CC1, NPBWR1	rs150387260-A	NR	2E-6		0.405	[0.24-0.57] unit increase	Illumina [up to 7373492] (imputed)	N
994	chr8	53705765	53705766	rs10808874	29855537	Hirata T	2018-05-31	Sci Rep	Japanese GWAS identifies variants for bust-size, dysmenorrhea, and menstrual fever that are eQTLs for relevant protein-coding or long non-coding RNAs.	Menstruation quality of life impact (dysmenorrhea)	3,573 Japanese ancestry female cases, 2,161 Japanese ancestry female controls	3,580 Japanese ancestry female cases, 2,034 Japanese ancestry female controls	8q11.23	NR	rs10808874-C	0.803879945	4E-6		0.16748436	[0.097-0.238] unit decrease	Affymetrix [536506]	N
994	chr8	53718972	53718973	rs575733898	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	8q11.23	RB1CC1	rs575733898-T	0.0017	9E-6		0.8346	[0.47-1.2] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
994	chr8	53739231	53739232	rs10095724	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	8q11.23	RB1CC1	rs10095724-G	0.637545	1E-10		0.00937064	[0.0065-0.0122] unit increase	Affymetrix [12370749]	N
995	chr8	53757398	53757399	rs35551581	29160301	Fabbri C	2017-11-21	Pharmacogenomics J	New insights into the pharmacogenomics of antidepressant response from the GENDEP and STAR*D studies: rare variant analysis and high-density imputation.	Response to antidepressants (symptom remission)	2,145 European ancestry individuals	NA	8q11.23	NR	rs35551581-?	NR	4E-6		1.600512	NR	Affymetrix, Illumina [7062950] (imputed)	N
995	chr8	53769212	53769213	rs16918254	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	8q11.23	NPBWR1	rs16918254-A	0.92	1E-8		0.05	[0.032-0.068] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
995	chr8	53832662	53832663	rs11997538	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	8q11.23	NR	rs11997538-?	NR	1E-13				Affymetrix [NR]	N
995	chr8	53834011	53834012	rs7011049	26969751	Parmar PG	2016-03-11	Circ Cardiovasc Genet	International Genome-Wide Association Study Consortium Identifies Novel Loci Associated With Blood Pressure in Children and Adolescents.	Systolic blood pressure	5,008 European ancestry prepubescent females, 5,082 European ancestry prepubescent males, 4,238 European ancestry pubescent females, 4,185 European ancestry pubescent males, 2,680 European ancestry post-pubescent females, 2,496 European ancestry post-pubescent males	NA	8q11.23	intergenic	rs7011049-?	NR	7E-6	(Male, Puberty)	0.125	[0.07-0.18] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
995	chr8	53842779	53842780	rs62507083	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	8q11.23		rs62507083-?	NR	7E-11				NR [~ 8900000] (imputed)	N
996	chr8	53926961	53926962	rs1365394	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Prevotella)	1,068 Japanese ancestry individuals	NA	8q11.23	intergenic	rs1365394-T	0.17	3E-6		1.34	[0.77-1.91] unit decrease	Illumina [6380737] (imputed)	N
997	chr8	54026144	54026145	rs34726119	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	8q11.23		rs34726119-?	NR	6E-15				NR [~ 8900000] (imputed)	N
997	chr8	54045825	54045826	rs2376427	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Smoking x traumatic event in childhood (sexually molested) interaction	127,766 European ancestry individuals	NA	8q11.23		rs2376427-?	NR	3E-8		0.3886	[0.25-0.53] unit decrease	Affymetrix [NR] (imputed)	N
997	chr8	54119213	54119214	rs1425902	23967269	Kim JH	2013-08-13	PLoS One	A genome-wide association study of total serum and mite-specific IgEs in asthma patients.	IgE levels in asthmatics (D.p. specific)	329 Korean ancestry D.p.-positive cases, 548 Korean ancestry D.p.-negative cases	NA	8q11.23	OPRK1	rs1425902-G	0.262	1E-6		2.14	[1.56-2.94]	Illumina [442089]	N
998	chr8	54160091	54160092	rs10111937	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	8q11.23	OPRK1	rs10111937-C	0.699952	4E-8		0.00836953	[0.0054-0.0114] unit decrease	Affymetrix [12370749]	N
998	chr8	54203555	54203556	rs77351942	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-2 levels	3,475 Finnish ancestry individuals	NA	8q11.23	NR	rs77351942-C		7E-6		0.5326	[0.3-0.77] SD units increase	NR [10700000] (imputed)	N
998	chr8	54244457	54244458	rs6473810	30808802	Freidin M	2019-02-26	J Med Genet	Genome-wide meta-analysis identifies genetic locus on chromosome 9 associated with Modic changes.	Modic changes	994 European ancestry cases, 835 European ancestry controls	NA	8q11.23	OPRK1	rs6473810-G	0.318	5E-6		1.369863	[1.19-1.56]	Illumina [5479070] (imputed)	N
999	chr8	54274099	54274100	rs7001769	32227373	Osazuwa-Peters OL	2020-03-29	Genet Epidemiol	Identifying blood pressure loci whose effects are modulated by multiple lifestyle exposures.	Systolic blood pressure	6,254 European ancestry individuals	NA	8q11.23	NR	rs7001769-?	NR	3E-6	(adjusted for quantitative lifestyle risk score)			NR [~ 24000000] (imputed)	N
999	chr8	54277246	54277247	rs7465458	32227373	Osazuwa-Peters OL	2020-03-29	Genet Epidemiol	Identifying blood pressure loci whose effects are modulated by multiple lifestyle exposures.	Systolic blood pressure x quantitative lifestyle risk score interaction (2df test)	6,254 European ancestry individuals	NA	8q11.23	OPRK1	rs7465458-A	0.828	7E-7				NR [2411114] (imputed)	N
999	chr8	54310938	54310940	rs141746998	31092297	Guan M	2019-05-15	Hum Genomics	Genome-wide association study identifies novel loci for type 2 diabetes-attributed end-stage kidney disease in African Americans.	Type 2 diabetes and end-stage kidney disease	3,432 African-American cases, 6,977 African-American controls	NA	8q11.23		rs141746998-C	0.969	9E-6		1.6129031	[1.32-2.00]	Affymetrix, Illumina [NR] (imputed)	N
999	chr8	54317550	54317551	rs2126800	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	8q11.23	NR	rs2126800-?	NR	2E-6		0.0962007	[0.056-0.136] unit increase	NR [13958389] (imputed)	N
1000	chr8	54396375	54396376	rs1585634	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	8q11.23	OPRK1	rs1585634-G	0.198771	1E-8		0.0145828	[0.0095-0.0197] unit increase	NR [16516521] (imputed)	N
1000	chr8	54410207	54410208	rs10958369	21659360	Wade R	2011-06-09	Haematologica	Association between single nucleotide polymorphism-genotype and outcome of patients with chronic lymphocytic leukemia in a randomized chemotherapy trial.	Response to antineoplastic agents	356 European ancestry cases	380 European ancestry cases	8q11.23	intergenic	rs10958369-?	NR	2E-6		2.33	[1.64-3.33]	Illumina [326385]	N
1000	chr8	54447731	54447732	rs139218005	26503814	Hardin M	2016-10-27	Pharmacogenomics J	A genome-wide analysis of the response to inhaled ?2-agonists in chronic obstructive pulmonary disease.	Response to bronchodilator in chronic obstructive pulmonary disease (change in FEV1)	5,766 European ancestry cases, 811 African American cases	NA	8q11.23	ATP6V1H	rs139218005-A	0.97	1E-6	(BDRPRED, AA)	4.935	[3.19-6.68] unit increase	Illumina [NR] (imputed)	N
1000	chr8	54453129	54453130	rs9693226	29751835	Hu H	2018-05-11	BMC Med Genet	Genome-wide association study identified ATP6V1H locus influencing cerebrospinal fluid BACE activity.	Cerebrospinal fluid beta-site APP cleaving enzyme levels	86 European ancestry Alzheimer's disease cases, 163 European ancestry mild cognitive impairment cases, 91 European ancestry controls	NR	8q11.23	MAPK6PS1	rs9693226-?	NR	7E-6				Illumina [519442]	N
1000	chr8	54466587	54466588	rs16919354	28762467	Wadelius M	2017-08-01	Clin Pharmacol Ther	Sulfasalazine-Induced Agranulocytosis Is Associated With the Human Leukocyte Antigen Locus.	Sulfasalazine-induced agranulocytosis	36 European ancestry cases, 5,170 European ancestry untreated controls	NA	8q11.23	intergenic	rs16919354-?	NR	8E-7		6.58	[3.11-13.89]	Illumina [9380034] (imputed)	N
1000	chr8	54521247	54521248	rs12680875	28031287	Sasayama D	2016-11-26	Hum Mol Genet	Genome-wide quantitative trait loci mapping of the human cerebrospinal fluid proteome.	Cerebrospinal fluid biomarker levels	133 Japanese ancestry individuals.	NA	8q11.23	NR	rs12680875-?	NR	3E-9	(3-hydroxy-3-methylglutaryl-coenzyme A reductase)			Illumina [514227]	N
1001	chr8	54543287	54543288	rs7462612	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x long total sleep time interaction (2df test)	2,933 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, up to 7,870 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,975 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 32,171 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 616 East Asian ancestry long sleepers, up to 9,486 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 929 African American controls, 2,517 East Asian ancestry controls, up to 38,126 European ancestry controls, 10,063 Hispanic controls	8q11.23	ATP6V1H	rs7462612-?	NR	9E-12		0.004767	[0.0026-0.0069] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1001	chr8	54555199	54555200	rs11773966	23092984	Goes FS	2012-10-23	Transl Psychiatry	Genome-wide association of mood-incongruent psychotic bipolar disorder.	Bipolar disorder with mood-incongruent psychosis	2,196 European and other ancestry cases, 8,148 European and other ancestry controls	NA	8q11.23	ATP6V1H	rs11773966-A	NR	2E-6		2.17	[NR]	Affymetrix, Illumina [~ 2500000] (imputed)	N
1002	chr8	54690284	54690285	rs1481950	29751835	Hu H	2018-05-11	BMC Med Genet	Genome-wide association study identified ATP6V1H locus influencing cerebrospinal fluid BACE activity.	Cerebrospinal fluid beta-site APP cleaving enzyme levels	86 European ancestry Alzheimer's disease cases, 163 European ancestry mild cognitive impairment cases, 91 European ancestry controls	NR	8q11.23	ATP6V1H	rs1481950-G	NR	5E-9			unit increase	Illumina [519442]	N
1002	chr8	54762903	54762904	rs6473895	29751835	Hu H	2018-05-11	BMC Med Genet	Genome-wide association study identified ATP6V1H locus influencing cerebrospinal fluid BACE activity.	Cerebrospinal fluid beta-site APP cleaving enzyme levels	86 European ancestry Alzheimer's disease cases, 163 European ancestry mild cognitive impairment cases, 91 European ancestry controls	NR	8q11.23	RGS20	rs6473895-?	NR	8E-6				Illumina [519442]	N
1002	chr8	54786340	54786341	rs1483540	29559957	Wang W	2018-03-06	Front Endocrinol (Lausanne)	Heritability and Genome-Wide Association Analyses of Serum Uric Acid in Middle and Old-Aged Chinese Twins.	Serum uric acid levels	139 Chinese ancestry dizygotic twin pairs	NA	8q11.23	RGS20	rs1483540-?	NR	9E-6				Illumina [1365181]	N
1003	chr8	54788250	54788251	rs7827611	32222710	Hosgood Iii HD	2020-03-27	Respiration	PRDM15 Is Associated with Risk of Chronic Obstructive Pulmonary Disease in a Rural Population in Chile.	Chronic obstructive pulmonary disease	214 Chilean cases, 193 Chilean controls	NA	8q11.23	RGS20	rs7827611-?	NR	4E-6				Illumina [455564] (imputed)	N
1003	chr8	54820743	54820744	rs111774916	34162658	Quinn MC	2021-06-23	Cancer Epidemiol Biomarkers Prev	Identification of a locus near ULK1 associated with progression-free survival in ovarian cancer.	Progression free survival in serous epithelial ovarian cancer	4,037 European ancestry individuals	NA	8q11.23	NR	rs111774916-C		6E-6		0.4504	[0.26-0.65] unit increase	Illumina [12770451] (imputed)	N
1003	chr8	54858980	54858981	rs17301329	26631737	Teumer A	2015-12-02	Diabetes	Genome-wide Association Studies Identify Genetic Loci Associated With Albuminuria in Diabetes.	Urinary albumin-to-creatinine ratio	up to 54,450 European ancestry individuals	NA	8q11.23	RGS20, TCEA1, LYPLA1	rs17301329-A	0.29	6E-7		0.042	[0.026-0.058] unit increase	Affymetrix, Illumina [2191945] (imputed)	N
1004	chr8	54965703	54965704	rs181336351	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	8q11.23	LYPLA1	rs181336351-G	NR	6E-6	(women)	0.127491	[0.072-0.183] unit decrease	Illumina [13520550] (imputed)	N
1004	chr8	54965703	54965704	rs181336351	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	8q11.23	LYPLA1	rs181336351-G	0.994	1E-7		0.104601	[0.066-0.143] unit decrease	Illumina [13520550] (imputed)	N
1005	chr8	55060253	55060254	rs147113313	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Chronic lymphocytic leukemia	764 White British ancestry cases, 272,079 White British ancestry controls	NA	8q11.23		rs147113313-?	NR	4E-6		8.2973	[7.4-9.2]	NR [663083]	N
1005	chr8	55084781	55084782	rs311392	26545240	Giri A	2015-11-06	PLoS One	Genetic Determinants of Pelvic Organ Prolapse among African American and Hispanic Women in the Women's Health Initiative.	Pelvic organ prolapse (moderate/severe)	154 African American cases, 948 African American controls, 163 Hispanic cases, 305 Hispanic controls	NA	8q11.23	CHCHD2P10, LYPLA1	rs311392-C	0.75	7E-6		1.61		Affymetrix [at least 730985] (imputed)	N
1005	chr8	55162800	55162801	rs185258863	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	8q11.23	Intergenic	rs185258863-T	NR	3E-7		0.107075	[0.066-0.148] unit decrease	Illumina [13520550] (imputed)	N
1006	chr8	55216182	55216183	rs56775982	31219150	Ekenberg C	2019-06-13	J Infect Dis	Single nucleotide polymorphisms in HLA alleles are associated with HIV-1 viral load in demographically diverse, ART-naive participants from the START trial.	Pre-treatment viral load in HIV-1 infection	1,398 European ancestry individuals, 572 Black individuals, 418 Hispanic individuals, 13 Asian ancestry individuals, 39 individuals	NA	8q11.23	intergenic	rs56775982-T	0.091	2E-17		0.34	[0.27-0.42] unit decrease	Affymetrix [339439]	N
1006	chr8	55246290	55246290	rs10627982	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	8q11.23	RNU105C	rs10627982-ATT	0.257936	2E-10		0.016502282	[0.011-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1006	chr8	55258126	55258127	rs10103692	30527956	Rhodes CJ	2018-12-05	Lancet Respir Med	Genetic determinants of risk in pulmonary arterial hypertension: international genome-wide association studies and meta-analysis.	Pulmonary arterial hypertension	2,085 European ancestry cases, 9,659 European ancestry controls	NA	8q11.23	SOX17	rs10103692-G	0.9	5E-15		1.8	[1.55-2.08]	Illumina [~ 7727590] (imputed)	N
1006	chr8	55267611	55267612	rs13266183	30527956	Rhodes CJ	2018-12-05	Lancet Respir Med	Genetic determinants of risk in pulmonary arterial hypertension: international genome-wide association studies and meta-analysis.	Pulmonary arterial hypertension	2,085 European ancestry cases, 9,659 European ancestry controls	NA	8q11.23	SOX17	rs13266183-C	0.73	2E-12		1.36	[1.25-1.48]	Illumina [~ 7727590] (imputed)	N
1006	chr8	55310710	55310711	rs1504749	20364137	Yasuno K	2010-04-04	Nat Genet	Genome-wide association study of intracranial aneurysm identifies three new risk loci.	Intracranial aneurysm	2,780 European ancestry cases, 12,515 European ancestry controls	3,111 Japanese ancestry cases, 1,666 Japanese ancestry controls	8q11.23	SOX17	rs1504749-C	0.21	5E-7		1.17	[1.10-1.24]	Illumina [831534] (imputed)	N
1007	chr8	55325203	55325204	rs7814396	31206164	Richards AL	2019-06-17	Schizophr Bull (Bp)	The Relationship Between Polygenic Risk Scores and Cognition in Schizophrenia.	Cognitive ability in schizophrenia	3,034 European ancestry individuals	NA	8q11.23	NR	rs7814396-?	NR	6E-6		0.3207	[0.18-0.46] unit increase	Illumina [NR] (imputed)	N
1007	chr8	55327090	55327091	rs10958409	18997786	Bilguvar K	2008-11-09	Nat Genet	Susceptibility loci for intracranial aneurysm in European and Japanese populations.	Intracranial aneurysm	1,580 European ancestry cases, 6,276 European ancestry controls	495 Japanese ancestry cases, 676 Japanese ancestry controls	8q11.23	SOX17	rs10958409-A	0.15	1E-10		1.36	[1.24-1.49]	Illumina [289271]	N
1007	chr8	55407285	55407287	rs200868824	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	8q11.23		rs200868824-G	0.210408	4E-11		0.018428043	[0.013-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1007	chr8	55413220	55413221	rs535035513	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Cardio-cerebrovascular disease in diabetes mellitus	497 Korean ancestry cases, 4,815 Korean ancestry controls	NA	8q11.23		rs535035513-T	0.01407	1E-5		2.929	[1.82-4.71399999999999]	Affymetrix [7975321] (imputed)	N
1007	chr8	55421613	55421614	rs10102164	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	8q11.23		rs10102164-A	NR	2E-13		0.019	[0.014-0.024] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
1007	chr8	55421613	55421614	rs10102164	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	8q11.23	NR	rs10102164-A	NR	1E-24		0.0298	[0.024-0.035] unit increase	Affymetrix [9000000] (imputed)	N
1007	chr8	55421613	55421614	rs10102164	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	8q11.23	NR	rs10102164-A	NR	1E-23		0.0291	[0.023-0.035] unit increase	Affymetrix [9000000] (imputed)	N
1007	chr8	55421613	55421614	rs10102164	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	8q11.23	NR	rs10102164-A	NR	3E-39		0.0381	[0.032-0.044] unit increase	Affymetrix [9000000] (imputed)	N
1007	chr8	55421613	55421614	rs10102164	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	8q11.23	NR	rs10102164-A	NR	8E-12		0.0199	[0.014-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
1007	chr8	55421613	55421614	rs10102164	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	8q11.23	NR	rs10102164-A	NR	9E-21		0.0272	[0.022-0.033] unit increase	Affymetrix [9000000] (imputed)	N
1007	chr8	55421613	55421614	rs10102164	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	8q11.23	NR	rs10102164-A	NR	2E-11		0.0195	[0.014-0.025] unit increase	Affymetrix [9000000] (imputed)	N
1007	chr8	55421613	55421614	rs10102164	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	LDL cholesterol levels	up to 23,353 African ancestry individuals, 13,171 Asian ancestry individuals, up to 82,522 European ancestry individuals, 6,646 Hispanic individuals	NA	8q11.23		rs10102164-A	0.1938	8E-7	(EA)	1.1503	[0.69-1.61] unit increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1007	chr8	55421613	55421614	rs10102164	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	Factor VIII levels	25,897 European ancestry individuals, 4,500 African American individuals, 773 Asian ancestry individuals, 1,440 Hispanic individuals	NA	8q11.23	SOX17, RP1	rs10102164-A	0.19	2E-9		0.0185	[0.012-0.025] unit increase	Affymetrix, Illumina [13887196] (imputed)	N
1007	chr8	55421613	55421614	rs10102164	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	Factor VIII levels	25,897 European ancestry individuals, 4,500 African American individuals, 773 Asian ancestry individuals, 1,440 Hispanic individuals	NA	8q11.23	SOX17, RP1	rs10102164-A	0.19	2E-7	(EA)	0.0177	[0.011-0.024] unit increase	Affymetrix, Illumina [13887196] (imputed)	N
1007	chr8	55421613	55421614	rs10102164	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q11.23	NR	rs10102164-G	NR	5E-12		0.036	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1007	chr8	55421613	55421614	rs10102164	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q11.23	NR	rs10102164-G	0.807	2E-8	(EA)	0.033	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1007	chr8	55421613	55421614	rs10102164	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q11.23	NR	rs10102164-G	0.777	5E-7	(East Asian)	0.095	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1007	chr8	55421613	55421614	rs10102164	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q11.23	NR	rs10102164-G	NR	3E-12		0.038	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1007	chr8	55421613	55421614	rs10102164	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q11.23	NR	rs10102164-G	0.807	6E-9	(EA)	0.035	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1007	chr8	55421613	55421614	rs10102164	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q11.23	NR	rs10102164-G	0.777	4E-6	(East Asian)	0.088	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1007	chr8	55421613	55421614	rs10102164	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Total cholesterol levels	32,576 East Asian ancestry individuals, 187,365 European ancestry individuals	10,855 Chinese ancestry individuals	8q11.23	SOX17	rs10102164-A	0.174	7E-10	(Trans-ethnic initial)	0.0301	[0.022-0.039] unit increase (EA Beta values)	Affymetrix, Illumina [up to 1900000] (imputed)	N
1007	chr8	55421613	55421614	rs10102164	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	LDL cholesterol levels	32,285 East Asian ancestry individuals, 173,082 European ancestry individuals	8,478 Chinese ancestry individuals	8q11.23	SOX17	rs10102164-A	0.174	8E-11	(Trans-ethnic initial)	0.0316	[0.023-0.04] unit increase (EA Beta value)	Affymetrix, Illumina [~ 1900000] (imputed)	N
1007	chr8	55421613	55421614	rs10102164	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	8q11.23	SOX17	rs10102164-A	0.21	4E-11		0.032	[NR] unit increase	NR [NR] (imputed)	N
1007	chr8	55421613	55421614	rs10102164	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	8q11.23	SOX17	rs10102164-A	0.21	5E-11		0.03	[NR] unit increase	NR [NR] (imputed)	N
1007	chr8	55421768	55421769	rs56204645	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	8q11.23	SOX17, RP1	rs56204645-C	NR	1E-18	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1007	chr8	55421768	55421769	rs56204645	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	8q11.23	SOX17, RP1	rs56204645-C	NR	1E-17				Affymetrix, Illumina [NR] (imputed)	N
1007	chr8	55421768	55421769	rs56204645	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	8q11.23	SOX17, RP1	rs56204645-C	NR	8E-20				Affymetrix, Illumina [NR] (imputed)	N
1007	chr8	55421768	55421769	rs56204645	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	8q11.23	SOX17, RP1	rs56204645-C	NR	3E-20	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1007	chr8	55421768	55421769	rs56204645	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	8q11.23	SOX17, RP1	rs56204645-C	NR	4E-13		1.197	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1007	chr8	55421768	55421769	rs56204645	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	8q11.23	SOX17, RP1	rs56204645-C	NR	2E-13	(EA)	1.604	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1007	chr8	55421768	55421769	rs56204645	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	8q11.23	SOX17, RP1	rs56204645-C	NR	6E-11	(EA)	1.91	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1007	chr8	55421768	55421769	rs56204645	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	8q11.23	SOX17, RP1	rs56204645-C	NR	1E-8		1.117	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1007	chr8	55421768	55421769	rs56204645	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	8q11.23		rs56204645-?	NR	1E-14				NR [~ 8900000] (imputed)	N
1007	chr8	55422439	55422440	rs10104003	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	8q11.23	SOX17	rs10104003-C	0.792037	4E-51		0.00943682	[0.0082-0.0107] unit decrease	Affymetrix [13995440] (imputed)	N
1007	chr8	55422439	55422440	rs10104003	30670697	Kilpelainen TO	2019-01-22	Nat Commun	Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity.	LDL cholesterol x physical activity interaction (2df test)	7,260 African American inactive individuals, 12,761 African American active individuals, 2,740 Asian ancestry inactive individuals, 3,615 Asian ancestry active individuals, 22,378 European ancestry inactive individuals, 55,310 European ancestry active individuals, 2,163 Hispanic or Latin American inactive individuals, 3,461 Hispanic or Latin American active individuals	571 African American inactive individuals, 1,521 African American active individuals, 1,217 South African Black ancestry inactive individuals, 389 South African Black ancestry active individuals, 2,495 East Asian ancestry inactive individuals, 1,947 East Asian ancestry active individuals,  724 South Asian ancestry inactive individuals, 1,425 South Asian ancestry active individuals,  33,796 European ancestry inactive individuals, 50,812 European ancestry active individuals, 2,578 Hispanic inactive individuals, 8,661 Hispanic active individuals	8q11.23	NR	rs10104003-T	0.1895	1E-13				Affymetrix, Illumina [at least 2500000] (imputed)	N
1007	chr8	55422439	55422440	rs10104003	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	8q11.23	intergenic	rs10104003-T	0.2027	8E-9		0.0258992	[0.017-0.035] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1007	chr8	55436636	55436637	rs28387039	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	8q11.23		rs28387039-A	NR	2E-40		0.0325	[0.028-0.037] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
1007	chr8	55436792	55436793	rs28600710	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	8q11.23		rs28600710-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1007	chr8	55437523	55437524	rs9298506	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	8q11.23	SOX17	rs9298506-A	0.792201	3E-13		0.0187965	[0.014-0.024] unit decrease	Affymetrix [NR] (imputed)	N
1007	chr8	55437523	55437524	rs9298506	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	8q11.23	SOX17	rs9298506-A	0.792281	1E-13		0.0189638	[0.014-0.024] unit decrease	Affymetrix [NR] (imputed)	N
1007	chr8	55437523	55437524	rs9298506	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	8q11.23	RP1	rs9298506-?	NR	3E-23		0.0312	[0.026-0.037] unit increase	Affymetrix [5701386] (imputed)	N
1007	chr8	55437523	55437524	rs9298506	20364137	Yasuno K	2010-04-04	Nat Genet	Genome-wide association study of intracranial aneurysm identifies three new risk loci.	Intracranial aneurysm	2,780 European ancestry cases, 12,515 European ancestry controls	3,111 Japanese ancestry cases, 1,666 Japanese ancestry controls	8q11.23	SOX17	rs9298506-A	0.81	1E-12		1.28	[1.20-1.38]	Illumina [831534] (imputed)	N
1007	chr8	55437523	55437524	rs9298506	18997786	Bilguvar K	2008-11-09	Nat Genet	Susceptibility loci for intracranial aneurysm in European and Japanese populations.	Intracranial aneurysm	1,580 European ancestry cases, 6,276 European ancestry controls	495 Japanese ancestry cases, 676 Japanese ancestry controls	8q11.23	SOX17	rs9298506-A	0.81	2E-9		1.35	[1.22-1.49]	Illumina [289271]	N
1007	chr8	55440067	55440068	rs10104997	22001756	Khor CC	2011-10-16	Nat Genet	Genome-wide association study identifies susceptibility loci for dengue shock syndrome at MICB and PLCE1.	Dengue shock syndrome	2,008 Vietnamese ancestry child cases, 2,018 Vietnamese ancestry child controls	1,737 Vietnamese ancestry child cases, 2,934 Vietnamese ancestry child controls	8q11.23	NR	rs10104997-?	NR	9E-7		1.2	[NR]	Illumina [481342]	N
1007	chr8	55441798	55441799	rs28503706	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	8q11.23		rs28503706-G	NR	3E-19		0.0234	[0.018-0.028] unit increase	Affymetrix, Illumina [20521447] (imputed)	N
1007	chr8	55441798	55441799	rs28503706	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q11.23	NR	rs28503706-A	NR	2E-12		0.037	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1007	chr8	55441798	55441799	rs28503706	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q11.23	NR	rs28503706-A	0.811	2E-8	(EA)	0.033	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1007	chr8	55441798	55441799	rs28503706	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q11.23	NR	rs28503706-A	0.778	5E-7	(East Asian)	0.095	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1007	chr8	55441798	55441799	rs28503706	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q11.23	NR	rs28503706-A	NR	1E-12		0.038	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1007	chr8	55441798	55441799	rs28503706	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q11.23	NR	rs28503706-A	0.811	9E-9	(EA)	0.035	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1007	chr8	55441798	55441799	rs28503706	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q11.23	NR	rs28503706-A	0.778	4E-6	(East Asian)	0.089	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1008	chr8	55449280	55449281	rs28571765	27363682	Mitchell JS	2016-07-01	Nat Commun	Genome-wide association study identifies multiple susceptibility loci for multiple myeloma.	Multiple myeloma	7,319 European ancestry cases, 234,385 European ancestry controls	2,547 European ancestry cases, 4,803 European ancestry controls	8q11.23	Intergenic	rs28571765-T	0.807	2E-6		1.1	[NR]	Illumina [at least 7182761] (imputed)	N
1008	chr8	55451141	55451142	rs28457828	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	8q11.23		rs28457828-T	NR	4E-20		0.022	[0.017-0.027] unit increase	Affymetrix, Illumina [20536134] (imputed)	N
1008	chr8	55451192	55451193	rs28615248	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FCN3	5,351 Icelandic ancestry individuals	NA	8q11.23		rs28615248-C	0.2235	2E-13		0.156335	[0.11-0.2] unit increase	Illumina [7506463] (imputed)	N
1008	chr8	55451192	55451193	rs28615248	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	8q11.23		rs28615248-C	NR	6E-16		0.0198	[0.015-0.025] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1008	chr8	55451192	55451193	rs28615248	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls, 33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	8q11.23		rs28615248-C	NR	8E-9		0.0348	[0.023-0.047] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1008	chr8	55451192	55451193	rs28615248	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	8q11.23	NR	rs28615248-C	0.196684	1E-17		0.023895632	[0.018-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
1008	chr8	55451192	55451193	rs28615248	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	8q11.23		rs28615248-C	0.196707	2E-17		0.023757027	[0.018-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
1008	chr8	55451192	55451193	rs28615248	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q11.23	NR	rs28615248-C	0.195268	5E-22				Affymetrix, Illumina [24649327] (imputed)	N
1008	chr8	55451192	55451193	rs28615248	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	8q11.23	NR	rs28615248-C	0.194681	9E-21		0.022775	[0.018-0.028] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1008	chr8	55451192	55451193	rs28615248	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q11.23	NR	rs28615248-C	0.19406	4E-22				Affymetrix, Illumina [23114412] (imputed)	N
1008	chr8	55451192	55451193	rs28615248	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	8q11.23	NR	rs28615248-C	0.194044	8E-22		0.02339	[0.019-0.028] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
1008	chr8	55454505	55454506	rs6997005	33199917	Bakker MK	2020-11-16	Nat Genet	Genome-wide association study of intracranial aneurysms identifies 17 risk loci and genetic overlap with clinical risk factors.	Intracranial aneurysm	7,495 European ancestry cases, 71,934 European ancestry controls	NA	8q11.23	SOX17	rs6997005-A	0.4141	1E-14		0.1489	[0.11-0.19] unit increase	Affymetrix, Illumina [4471083] (imputed)	N
1008	chr8	55454563	55454564	rs72648770	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	8q11.23		rs72648770-G	NR	1E-10		0.0158	[0.011-0.021] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
1008	chr8	55460814	55460815	rs10097401	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	8q11.23		rs10097401-A	NR	1E-8		0.0143	[0.0094-0.0192] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
1008	chr8	55467027	55467028	rs62516550	33199917	Bakker MK	2020-11-16	Nat Genet	Genome-wide association study of intracranial aneurysms identifies 17 risk loci and genetic overlap with clinical risk factors.	Intracranial aneurysm	7,495 European ancestry cases, 3,259 East Asian ancestry cases, 71,934 European ancestry controls, 234,948 East Asian ancestry controls	NA	8q11.23	SOX17	rs62516550-T	0.335	3E-14		0.157	[0.12-0.2] unit increase	Affymetrix, Illumina [3527309] (imputed)	N
1008	chr8	55478909	55478909	rs35262860	31413261	Deelen J	2019-08-14	Nat Commun	A meta-analysis of genome-wide association studies identifies multiple longevity genes.	Longevity (age >90th survival percentile)	11,262 European ancestry cases, 2,178 East Asian ancestry cases, 177 African American cases, 25,483 European ancestry controls, 2,299 East Asian ancestry controls, 211 African American controls.	NA	8q11.23	RP1	rs35262860-GCT	0.39	6E-7		1.11	1.07-1.15	Affymetrix, Illumina [up to 10786384] (imputed)	N
1008	chr8	55483582	55483583	rs10216467	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	8q11.23	NR	rs10216467-A	NR	4E-9		0.0187	[0.012-0.025] unit increase	Affymetrix [9000000] (imputed)	N
1008	chr8	55483582	55483583	rs10216467	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	8q11.23	NR	rs10216467-A	NR	5E-12		0.0219	[0.016-0.028] unit increase	Affymetrix [9000000] (imputed)	N
1008	chr8	55495832	55495833	rs188586526	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in ever smokers	23,223 European ancestry cases,  16,964 European ancestry controls	NA	8q11.23	SOX17, RP1	rs188586526-T	0.01395899	9E-7		1.4032447	[1.225926631-1.606210214]	Illumina [10439017] (imputed)	N
1008	chr8	55495832	55495833	rs188586526	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	8q11.23	SOX17, RP1	rs188586526-T	0.011966545	2E-6		1.3087933	[1.171812197-1.461787099]	Illumina [10439017] (imputed)	N
1008	chr8	55509118	55509119	rs74543191	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	8q11.23	NR	rs74543191-A	NR	2E-9		0.0335	[0.023-0.044] unit increase	Affymetrix [9000000] (imputed)	N
1008	chr8	55523879	55523880	rs78305304	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 2, vertical position of orbits relative to midface)	2,187 European ancestry individuals	NA	8q12.1	NR	rs78305304-G	0.04241	5E-6		0.3536	[0.21-0.5] unit increase	Illumina [10677593] (imputed)	N
1009	chr8	55688170	55688171	rs13278605	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Ruminococcus belonging to family Erysipelotrichaceae)	1,068 Japanese ancestry individuals	NA	8q12.1	RP11-56A10.1	rs13278605-T	0.31	2E-6	(female)	0.307	[0.18-0.43] unit increase	Illumina [6380737] (imputed)	N
1009	chr8	55690976	55690977	rs142328647	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in ever smokers	23,223 European ancestry cases,  16,964 European ancestry controls	NA	8q12.1	RP1, XKR4	rs142328647-T	0.025405242	2E-6		1.2979821	[1.165323015-1.445743009]	Illumina [10439017] (imputed)	N
1010	chr8	55740932	55740933	rs6983764	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	8q12.1	NR	rs6983764-?	NR	4E-8		1.0518	[1.03-1.07]	Affymetrix, Illumina [12447948] (imputed)	N
1012	chr8	56029324	56029325	rs189005747	33075057	Li X	2020-10-19	PLoS Genet	Automated feature extraction from population wearable device data identified novel loci associated with sleep and circadian rhythms.	Sleep (1-day periodicity)	90,515 individuals	NA	8q12.1	XKR4	rs189005747-A	NR	1E-8		0.148	[0.097-0.199] unit decrease	NR [11024754] (imputed)	N
1012	chr8	56071389	56071390	rs112001543	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	8q12.1	XKR4	rs112001543-T	0.961	5E-6		0.075	[0.044-0.106] unit decrease	Affymetrix [7947838] (imputed)	N
1013	chr8	56137285	56137286	rs77060522	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Endometriosis	645 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	8q12.1	Intergenic	rs77060522-?		5E-6		2.9	[1.83-4.57]	Illumina [7645193] (imputed)	N
1013	chr8	56142428	56142431	rs202037802	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Diastolic blood pressure change trajectory	5,304 African American individuals, 13,137 European ancestry individuals, 1,317 Hispanic individuals, 1,439 admixed individuals, 703 Chinese ancestry individuals	6,500 African American individuals, 2,451 European ancestry individuals, 2,869 Hispanic individuals	8q12.1	NR	rs202037802-CTTT	0.4376	4E-7		0.0529	[0.033-0.073] mmHg decrease	Affymetrix, Illumina [NR] (imputed)	N
1013	chr8	56168058	56168059	rs12542677	22610502	Kennedy RB	2012-05-19	Hum Genet	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IL-1beta)	Up to 512 European ancestry individuals, up to 199 African American individuals	NA	8q12.1	XKR4	rs12542677-A		2E-7	(AA)			Illumina [NR]	N
1014	chr8	56280630	56280631	rs2658912	30808802	Freidin M	2019-02-26	J Med Genet	Genome-wide meta-analysis identifies genetic locus on chromosome 9 associated with Modic changes.	Modic changes	994 European ancestry cases, 835 European ancestry controls	NA	8q12.1	XKR4	rs2658912-G	0.873	9E-6		1.5384616	[1.27-1.85]	Illumina [5479070] (imputed)	N
1014	chr8	56280669	56280670	rs2622560	34112972	DeMichele-Sweet MAA	2021-06-10	Mol Psychiatry	Genome-wide association identifies the first risk loci for psychosis in Alzheimer disease.	Psychosis in Alzheimer's disease	4,551 European ancestry cases, 5,796 European ancestry controls, 894 African American or unknown ancestry cases, 1,076 African American or unknown ancestry controls	NA	8q12.1		rs2622560-A	NR	6E-6		1.21	[1.11-1.31]	Illumina [7105229] (imputed)	N
1014	chr8	56358273	56358274	rs2622590	24852370	Zhan M	2014-05-22	Hum Mol Genet	Genome-wide association study identifies a novel susceptibility gene for serum TSH levels in Chinese populations.	Serum thyroid-stimulating hormone levels	1,346 Han Chinese ancestry individuals	3,235 She Chinese ancestry individuals		XKR4, SBF1P1, LYN, TMEM68, TGS1	rs2622590-A	0.445	2E-10		0.03	[NR] unit decrease	Illumina [8503852] (imputed)	N
1015	chr8	56371744	56371745	rs2929032	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	8q12.1		rs2929032-A	0.4654	8E-9		0.0081	[0.0054-0.0108] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1015	chr8	56371744	56371745	rs2929032	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	8q12.1	Intergenic	rs2929032-A	0.4654	3E-8	(MTAG)	0.0073	[0.0048-0.0098] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1016	chr8	56499193	56499194	rs4738285	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	8q12.1		rs4738285-?	NR	9E-9				NR [~ 8900000] (imputed)	N
1016	chr8	56583712	56583713	rs139424516	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	8q12.1	intergenic	rs139424516-C	0.9783	1E-10		0.0437	[0.03-0.057] unit increase	Affymetrix [18391927] (imputed)	N
1016	chr8	56590543	56590544	rs13276516	27723756	Wang J	2016-10-10	Nat Genet	Genome-wide association analysis identifies variation in vitamin D receptor and other host factors influencing the gut microbiota.	Gut microbiota (bacterial taxa)	1,812 European ancestry individuals	NA	8q12.1	TGS1	rs13276516-A	NR	6E-9	(OTU10032 unclassified Enterobacteriaceae)	0.61	unit decrease	Affymetrix, Illumina [6344846] (imputed)	N
1016	chr8	56599547	56599548	rs4737395	23049088	Meng W	2012-10-09	Invest Ophthalmol Vis Sci	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		8q12.1	intergenic	rs4737395-?	0.1	5E-9			[NR]	Affymetrix, Illumina [152234]	N
1016	chr8	56599776	56599777	rs4738393	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine - clinic-based	5,175 European ancestry clinic-based cases, 13,972 European ancestry clinic-based controls	NA	8q12.1	intergenic	rs4738393-?	0.67	6E-6		1.09	[1.09-1.22]	Affymetrix, Illumina [~ 2300000] (imputed)	N
1016	chr8	56607002	56607003	rs4738399	28115739	Smith AH	2017-01-24	Mol Psychiatry	Genome-wide association study of therapeutic opioid dosing identifies a novel locus upstream of OPRM1.	Methadone dose in opioid dependence	1,027 European American cases, 383 African American cases	NA	8q12.1	TMEM68	rs4738399-T	0.3159514360313317	6E-6	(AA)	0.3543	[0.2-0.51] unit increase	Illumina [at least 988306] (imputed)	N
1016	chr8	56615710	56615711	rs73599169	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Superior temporal sulcus banks volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	8q12.1	NR	rs73599169-?		2E-6				Illumina [4322238] (imputed)	N
1017	chr8	56749583	56749584	rs13259933	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	8q12.1		rs13259933-A	0.50489	4E-10		0.014102717	[0.0097-0.0185] unit increase	Affymetrix [93095623] (imputed)	N
1017	chr8	56749583	56749584	rs13259933	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q12.1	NR	rs13259933-G	0.503609	2E-40				Affymetrix, Illumina [17210439] (imputed)	N
1017	chr8	56750015	56750016	rs6985353	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	8q12.1	NR	rs6985353-G	0.4949	1E-43		0.026661	[0.023-0.03] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
1018	chr8	56764455	56764456	rs6992820	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	8q12.1		rs6992820-G	0.48276	5E-34		0.027527876	[0.023-0.032] unit increase	Affymetrix [93095623] (imputed)	N
1018	chr8	56764455	56764456	rs6992820	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	8q12.1	intergenic	rs6992820-G	0.4822	2E-12		0.02565196	[0.019-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
1018	chr8	56785684	56785685	rs333613	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	8q12.1		rs333613-C	0.388757	4E-15		0.01785766	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1018	chr8	56785684	56785685	rs333613	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q12.1	NR	rs333613-T	0.640471	2E-15				Affymetrix, Illumina [23467995] (imputed)	N
1018	chr8	56785684	56785685	rs333613	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	8q12.1	NR	rs333613-T	0.610649	5E-17		0.016117	[0.012-0.02] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1018	chr8	56791243	56791244	rs2271400	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	8q12.1		rs2271400-T	NR	2E-17		0.0185	[0.014-0.023] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1018	chr8	56791243	56791244	rs2271400	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q12.1	NR	rs2271400-T	0.699045	1E-31				Affymetrix, Illumina [24649327] (imputed)	N
1018	chr8	56791243	56791244	rs2271400	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	8q12.1	NR	rs2271400-T	0.687974	1E-29		0.023494	[0.019-0.028] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1018	chr8	56791243	56791244	rs2271400	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q12.1	NR	rs2271400-T	0.693963	5E-28				Affymetrix, Illumina [23114412] (imputed)	N
1018	chr8	56791243	56791244	rs2271400	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	8q12.1	NR	rs2271400-T	0.688413	6E-30		0.0236	[0.02-0.028] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
1018	chr8	56791243	56791244	rs2271400	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	8q12.1	LYN	rs2271400-T	0.6869	8E-10		0.02379194	[0.016-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1018	chr8	56791243	56791244	rs2271400	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	8q12.1	LYN	rs2271400-T	0.6871	3E-10		0.02448989	[0.017-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1018	chr8	56791243	56791244	rs2271400	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	8q12.1	LYN	rs2271400-T	0.687	4E-10		0.02428513	[0.017-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1018	chr8	56791243	56791244	rs2271400	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	8q12.1	LYN	rs2271400-T	0.687	4E-10		0.02421228	[0.017-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1018	chr8	56791243	56791244	rs2271400	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	8q12.1	LYN	rs2271400-T	0.6871	2E-10		0.02486631	[0.017-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1018	chr8	56791243	56791244	rs2271400	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	8q12.1	LYN	rs2271400-T	0.687	3E-10		0.02442228	[0.017-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1018	chr8	56791445	56791446	rs72651454	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	8q12.1	LYN	rs72651454-G	0.181449	7E-14		0.021562586	[0.016-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1018	chr8	56792158	56792159	rs1450741	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	8q12.1		rs1450741-C	NR	3E-15		0.0184	[0.014-0.023] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
1018	chr8	56792158	56792159	rs1450741	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	8q12.1	LYN	rs1450741-C	0.68794	2E-22		0.023274403	[0.019-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
1018	chr8	56792158	56792159	rs1450741	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	8q12.1	LYN	rs1450741-C	0.68789	1E-22		0.023384215	[0.019-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
1018	chr8	56792158	56792159	rs1450741	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	8q12.1		rs1450741-?	NR	1E-22				NR [~ 8900000] (imputed)	N
1018	chr8	56792585	56792586	rs1050855	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	8q12.1	LYN	rs1050855-A	0.505759	1E-10		0.014282131	[0.0099-0.0186] unit increase	Affymetrix [93095623] (imputed)	N
1018	chr8	56792585	56792586	rs1050855	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	8q12.1	LYN	rs1050855-A	0.505764	2E-11		0.014946654	[0.011-0.019] unit increase	Affymetrix [93095623] (imputed)	N
1018	chr8	56795438	56795439	rs12676105	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	8q12.1	LYN	rs12676105-T	0.50473	2E-14		0.017245421	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1018	chr8	56795438	56795439	rs12676105	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q12.1	NR	rs12676105-T	0.536749	1E-19				Affymetrix, Illumina [24588908] (imputed)	N
1018	chr8	56795438	56795439	rs12676105	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	8q12.1	NR	rs12676105-T	0.503085	6E-23		0.018056	[0.014-0.022] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1018	chr8	56798800	56798800	rs34839284	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	8q12.1		rs34839284-CT	NR	1E-12		0.0174	[0.012-0.022] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1018	chr8	56800361	56800362	rs11776339	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	151,807 East Asian ancestry individuals	NA	8q12.1	NR	rs11776339-C	0.379469	2E-10		0.026901	[0.019-0.035] SD units increase	Affymetrix, Illumina [16710636] (imputed)	N
1018	chr8	56800361	56800362	rs11776339	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	White blood cell count	107,964 Japanese ancestry individuals	NA	8q12.1	LYN	rs11776339-?	NR	4E-8		0.02731	[0.018-0.037] unit decrease novel	Illumina [6108953] (imputed)	N
1018	chr8	56800996	56800997	rs333616	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	8q12.1		rs333616-T	NR	2E-15		0.0174	[0.013-0.022] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
1018	chr8	56802068	56802069	rs333619	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	154,355 East Asian ancestry individuals	NA	8q12.1		rs333619-T	0.252614	4E-9		0.023721	[0.016-0.032] unit increase	Illumina [13479091] (imputed)	N
1018	chr8	56814420	56814421	rs1027989	28498854	Liang J	2017-05-12	PLoS Genet	Single-trait and multi-trait genome-wide association analyses identify novel loci for blood pressure in African-ancestry populations.	Blood pressure traits (multi-trait analysis)	Up to 31,155 African individuals	Up to 4,187 African individuals, up to 14,016 Korean ancestry individuals, up to 23,914 European ancestry individuals, up to 12,278 Hispanic individuals	8q12.1	EVX1, HOXA cluster	rs1027989-G	NR	7E-7	(Hom)			Affymetrix, Illumina [at least 30072738] (imputed)	N
1018	chr8	56814420	56814421	rs1027989	28498854	Liang J	2017-05-12	PLoS Genet	Single-trait and multi-trait genome-wide association analyses identify novel loci for blood pressure in African-ancestry populations.	Blood pressure traits (multi-trait analysis)	Up to 31,155 African individuals	Up to 4,187 African individuals, up to 14,016 Korean ancestry individuals, up to 23,914 European ancestry individuals, up to 12,278 Hispanic individuals	8q12.1	EVX1, HOXA cluster	rs1027989-G	NR	1E-6	(Het)			Affymetrix, Illumina [at least 30072738] (imputed)	N
1018	chr8	56873546	56873547	rs2668021	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	8q12.1		rs2668021-?	NR	1E-7				NR [~ 8900000] (imputed)	N
1018	chr8	56882470	56882471	rs1027986	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	8q12.1	NR	rs1027986-?	NR	2E-7				Affymetrix [NR]	N
1019	chr8	56937235	56937236	rs55857268	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	8q12.1	RN7SL323P	rs55857268-C	NR	2E-9		0.0199367	[0.013-0.026] unit increase	Affymetrix [321016] (imputed)	N
1019	chr8	56946545	56946546	rs17813588	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	8q12.1	RN7SL323P	rs17813588-T	NR	3E-8		0.0242536	[0.016-0.033] unit increase	Affymetrix [323123] (imputed)	N
1019	chr8	56946545	56946546	rs17813588	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	8q12.1	NR	rs17813588-T	0.147636	5E-9		0.0573488	[0.038-0.076] unit increase	Affymetrix [17914406] (imputed)	N
1019	chr8	56951790	56951791	rs147700781	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	8q12.1	intergenic	rs147700781-A	0.9866	7E-11		0.0593	[0.041-0.077] unit decrease	Affymetrix [18391927] (imputed)	N
1019	chr8	56980802	56980803	rs2953898	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	8q12.1	LYN, RPS20	rs2953898-?	NR	4E-8		1.1904762	[1.11-1.27]	Illumina [at least 5000000] (imputed)	N
1019	chr8	57005783	57005784	rs117261995	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	8q12.1	NR	rs117261995-C	0.106821	3E-9		0.021735488	[0.015-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1019	chr8	57005783	57005784	rs117261995	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	8q12.1		rs117261995-C	0.106856	3E-9		0.021540072	[0.014-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1020	chr8	57044382	57044383	rs111618861	27157822	Hallberg P	2016-05-03	Lancet Diabetes Endocrinol	Genetic variants associated with antithyroid drug-induced agranulocytosis: a genome-wide association study in a European population.	Anti-thyroid drug induced agranulocytosis	38 European ancestry cases, 1 case, 5,170 European ancestry controls	NA	8q12.1	Intergenic	rs111618861-?	NR	3E-8	(adjusted for rs652888, rs199564443, rs1071816)	13.75	[5.46-34.64]	Illumina [9380034] (imputed)	N
1020	chr8	57044418	57044419	rs118163641	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Aspartate aminotransferase levels in low alcohol consumption	8,716 individuals	NA	8q12.1	NR	rs118163641-?	NR	3E-6		0.1618	[0.094-0.23] unit increase	Illumina [~ 7800000] (imputed)	N
1020	chr8	57048349	57048350	rs149892036	33293427	Emami NC	2020-12-08	Cancer Res	A large-scale association study detects novel rare variants, risk genes, functional elements, and polygenic architecture of prostate cancer susceptibility.	Prostate cancer	14,113 European ancestry cases, 194,140 European ancestry controls	NA	8q12.1	NR	rs149892036-T	NR	4E-8		2.14	1.63-2.81	Affymetrix [at least 232408] (imputed)	N
1020	chr8	57072569	57072570	rs61334940	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	8q12.1	LYN, RPS20, MOS, PLAG1, CHCHD7, SDR16C5	rs61334940-?		1E-19				Affymetrix, Illumina [NR] (imputed)	N
1020	chr8	57074930	57074931	rs34715615	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	8q12.1	PLAG1	rs34715615-A	0.146351	3E-15		0.025546899	[0.019-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
1020	chr8	57087544	57087545	rs62515408	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	8q12.1	PLAG1	rs62515408-C	NR	3E-13		0.0298913	[0.022-0.038] unit increase	Affymetrix [321016] (imputed)	N
1020	chr8	57087544	57087545	rs62515408	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	8q12.1	NR	rs62515408-C	0.141	3E-10		0.0865944	[0.059-0.114] unit increase	Affymetrix [21375087] (imputed)	N
1020	chr8	57089430	57089431	rs35399441	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	8q12.1		rs35399441-?	NR	3E-14				NR [~ 8900000] (imputed)	N
1020	chr8	57095807	57095808	rs10958476	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	8q12.1	PLAG1	rs10958476-T	0.7873	9E-10	(EA)	0.0282	[0.019-0.037] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1020	chr8	57095807	57095808	rs10958476	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	8q12.1	PLAG1	rs10958476-T	0.7873	2E-7	(EA,men)	0.0346	[0.021-0.048] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1020	chr8	57095807	57095808	rs10958476	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	8q12.1	PLAG1	rs10958476-T	0.786	2E-40		0.051	[0.043-0.059] unit decrease	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
1020	chr8	57095807	57095808	rs10958476	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	8q12.1	SDR16C5	rs10958476-?	NR	1E-9	(Conditioned on rs7460090)		[NR]	Affymetrix, Illumina [2834208] (imputed)	N
1020	chr8	57095807	57095808	rs10958476	18391951	Gudbjartsson DF	2008-04-06	Nat Genet	Many sequence variants affecting diversity of adult human height.	Height	30,968 European ancestry individuals	8,541 European ancestry individuals	8q12.1	CHCHD7, RDHE2, MOS, RPS20, LYN, PLAG1, TGS1, PENK	rs10958476-C	0.23	7E-8		5.4	[3.44-7.36] % s.d. increase	Affymetrix, Illumina [up to 304226]	N
1020	chr8	57100148	57100149	rs7833986	20189936	Okada Y	2010-02-26	Hum Mol Genet	A genome-wide association study in 19 633 Japanese subjects identified LHX3-QSOX2 and IGF1 as adult height loci.	Height	19,633 Japanese ancestry individuals	NA	8q12.1	PLAG1	rs7833986-A	0.08	8E-10		0.12	[0.08-0.16] cm decrease	Illumina [420885]	N
1020	chr8	57100790	57100791	rs13273123	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	8q12.1	PLAG1	rs13273123-A	0.86	3E-29		0.099	[0.077-0.121] unit increase	Affymetrix, Illumina [2704730] (imputed)	N
1020	chr8	57100790	57100791	rs13273123	19893584	Kim JJ	2009-11-06	J Hum Genet	Identification of 15 loci influencing height in a Korean population.	Height	8,842 Korean ancestry individuals	NA	8q12.1	PLAG1	rs13273123-C	0.07	3E-6		0.75	[NR] cm decrease	Affymetrix [334546]	N
1020	chr8	57100790	57100791	rs13273123	19396169	Cho YS	2009-04-26	Nat Genet	A large-scale genome-wide association study of Asian populations uncovers genetic factors influencing eight quantitative traits.	Height	8,842 Korean ancestry individuals	7,861 Korean ancestry individuals	8q12.1	PLAG1	rs13273123-G	0.07	1E-9		0.71	[0.48-0.94] cm decrease	Affymetrix [2156535] (imputed)	N
1020	chr8	57102717	57102718	rs74926318	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	8q12.1	PLAG1	rs74926318-A	NR	5E-8		0.0429335	[0.028-0.058] unit increase	Affymetrix [321016] (imputed)	N
1020	chr8	57109357	57109358	rs62515430	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	8q12.1	PLAG1	rs62515430-?	NR	3E-31		0.040478732	[0.034-0.047] unit increase	Illumina [27896057] (imputed)	N
1020	chr8	57112045	57112046	rs34571768	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	8q12.1	PLAG1	rs34571768-A	NR	1E-11		0.029096	[0.021-0.038] unit decrease	Affymetrix [321016] (imputed)	N
1020	chr8	57112045	57112046	rs34571768	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	8q12.1	PLAG1	rs34571768-A	0.125933	4E-10		0.021103645	[0.014-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1020	chr8	57112045	57112046	rs34571768	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	8q12.1	NR	rs34571768-A	0.127987	1E-10		0.018487	[0.013-0.024] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1020	chr8	57114520	57114520	rs71555635	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	8q12.1	PLAG1	rs71555635-CTT	0.15	3E-16		0.0759	[0.058-0.094] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1020	chr8	57122214	57122215	rs72656010	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	8q12.1		rs72656010-C	NR	2E-41		0.0353	[0.03-0.04] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1020	chr8	57122214	57122215	rs72656010	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	8q12.1	PLAG1	rs72656010-T	0.8678	7E-126		0.0668	[0.061-0.072] unit increase	Affymetrix [18391927] (imputed)	N
1020	chr8	57122214	57122215	rs72656010	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	8q12.1	NR	rs72656010-C	0.133317	2E-9		0.0834758	[0.055-0.112] unit decrease	Affymetrix [21375087] (imputed)	N
1020	chr8	57122214	57122215	rs72656010	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	8q12.1	PLAG1	rs72656010-T	0.868322	1E-13		0.028319	[0.021-0.036] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1020	chr8	57122214	57122215	rs72656010	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	8q12.1	PLAG1	rs72656010-T	0.869692	9E-14		0.0205467	[0.015-0.026] unit decrease	NR [13737936] (imputed)	N
1020	chr8	57122214	57122215	rs72656010	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	8q12.1		rs72656010-?	NR	4E-172				NR [~ 8900000] (imputed)	N
1020	chr8	57122214	57122215	rs72656010	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	8q12.1		rs72656010-?	NR	3E-19				NR [~ 8900000] (imputed)	N
1020	chr8	57122214	57122215	rs72656010	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	8q12.1	NR	rs72656010-?	NR	6E-33		0.38854	[0.32-0.45] unit decrease	Affymetrix [7794483] (imputed)	N
1020	chr8	57122214	57122215	rs72656010	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	8q12.1	NR	rs72656010-?	NR	2E-19	(male)	0.4645	[0.36-0.57] unit decrease	Affymetrix [7794483] (imputed)	N
1020	chr8	57122214	57122215	rs72656010	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	8q12.1	NR	rs72656010-?	NR	2E-17	(female)	0.30241	[0.23-0.37] unit decrease	Affymetrix [7794483] (imputed)	N
1020	chr8	57122214	57122215	rs72656010	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	8q12.1		rs72656010-?	NR	1E-11		0.0215022	[0.015-0.028] unit decrease	Affymetrix [20259828] (imputed)	N
1020	chr8	57123522	57123523	rs62515432	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	8q12.1	NR	rs62515432-C	0.207918	4E-9		0.0676179	[0.044-0.091] unit increase	Affymetrix [21375087] (imputed)	N
1020	chr8	57123522	57123523	rs62515432	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	8q12.1	PLAG1	rs62515432-T	0.7891	9E-11		0.0513	[0.036-0.067] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1020	chr8	57129290	57129291	rs62515433	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	8q12.1	CHCHD7	rs62515433-T	NR	3E-22		0.0330837	[0.026-0.04] unit increase	Affymetrix [321016] (imputed)	N
1020	chr8	57132317	57132318	rs145612921	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	8q12.1		rs145612921-G	NR	5E-8		0.021	[0.014-0.028] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
1020	chr8	57135888	57135889	rs6984782	31097437	Plotnikov D	2019-05-16	Br J Ophthalmol	Association between birth weight and refractive error in adulthood: a Mendelian randomisation study.	Birth weight	188,039 European ancestry individuals	NA	8q12.1	NR	rs6984782-T	0.14	2E-8		0.027	[0.017-0.037] z score increase	Affymetrix [up to 10400000] (imputed)	N
1020	chr8	57136196	57136197	rs75201573	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	8q12.1	RP11-140I16.3	rs75201573-C	NR	8E-15		0.0284179	[0.021-0.036] unit increase	Affymetrix [323123] (imputed)	N
1020	chr8	57138675	57138676	rs36112366	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	8q12.1		rs36112366-G	0.085954	3E-18		0.0421848	[0.033-0.052] unit decrease	Illumina [13479924] (imputed)	N
1020	chr8	57138675	57138676	rs36112366	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	8q12.1		rs36112366-G	NR	2E-130		0.0518	[0.048-0.056] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1020	chr8	57138675	57138676	rs36112366	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	8q12.1		rs36112366-G	0.08605	3E-46		0.0512276	[0.044-0.058] unit decrease	Illumina [13479295] (imputed)	N
1020	chr8	57138675	57138676	rs36112366	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	8q12.1	CHCHD7, SDR16C5	rs36112366-?	NR	1E-53		0.07846603	[0.068-0.088] unit decrease	Illumina [27896057] (imputed)	N
1021	chr8	57152480	57152481	rs72656017	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	8q12.1	NR	rs72656017-A	0.869682	6E-12		0.00829679	[0.0058-0.0107] unit increase	Affymetrix [16582909] (imputed)	N
1021	chr8	57152480	57152481	rs72656017	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	8q12.1	NR	rs72656017-A	0.869682	5E-9		0.00812642	[0.0054-0.0109] unit increase	Affymetrix [16582965] (imputed)	N
1021	chr8	57154652	57154653	rs36063247	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	8q12.1	RP11-140I16.2	rs36063247-T	NR	8E-20		0.045055	[0.035-0.055] unit decrease	Affymetrix [323123] (imputed)	N
1021	chr8	57154652	57154653	rs36063247	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	8q12.1	NR	rs36063247-?	NR	4E-11				Affymetrix [~ 8270000] (imputed)	N
1021	chr8	57155597	57155598	rs9650315	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	8q12.1	CHCHD7	rs9650315-T	0.133	2E-41		0.061	[0.051-0.071] unit decrease	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
1021	chr8	57155597	57155598	rs9650315	18391950	Lettre G	2008-04-06	Nat Genet	Identification of ten loci associated with height highlights new biological pathways in human growth.	Height	15,821 European ancestry individuals	Up to 17,801 European ancestry individuals	8q12.1	CHCHD7, RDHE2	rs9650315-T	0.13	4E-7		0.43	[0.59-1.07] cm decrease	Affymetrix, Illumina [2260683] (imputed)	N
1021	chr8	57156311	57156312	rs117537268	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8q12.1	NR	rs117537268-A	0.01916	1E-10	(PLD3)	0.02269	NR unit increase	Illumina [1671387] (imputed)	N
1021	chr8	57156675	57156676	rs9650183	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	8q12.1	RP11-140I16.2	rs9650183-T	NR	1E-8		0.0239209	[0.016-0.032] unit decrease	Affymetrix [321016] (imputed)	N
1021	chr8	57159195	57159196	rs75951998	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	8q12.1	Intergenic	rs75951998-?		1E-6		1.86	[1.45-2.38]	Illumina [7645193] (imputed)	N
1021	chr8	57165496	57165497	rs12375443	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	8q12.1	NR	rs12375443-?	NR	3E-6				Affymetrix [NR]	N
1021	chr8	57168100	57168101	rs7840305	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	8q12.1	CHCHD7	rs7840305-A	0.62892	3E-8		0.008059	[0.0052-0.0109] unit increase	Affymetrix [12370749]	N
1021	chr8	57170646	57170647	rs67742458	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	8q12.1	NR	rs67742458-G	0.121386	2E-13		0.0752729	[0.055-0.096] unit decrease	Affymetrix [17914406] (imputed)	N
1021	chr8	57170646	57170647	rs67742458	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	8q12.1	CHCHD7, SDR16C5	rs67742458-?	NR	2E-13		0.068338625	[0.05-0.087] unit decrease	Illumina [27896057] (imputed)	N
1021	chr8	57173279	57173280	rs7830588	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	8q12.1	RP11-140I16.2	rs7830588-G	NR	8E-12		0.0325241	[0.023-0.042] unit decrease	Affymetrix [323123] (imputed)	N
1021	chr8	57179019	57179020	rs7815788	19343178	Soranzo N	2009-04-03	PLoS Genet	Meta-analysis of genome-wide scans for human adult stature identifies novel Loci and associations with measures of skeletal frame size.	Height	12,611 European ancestry individuals	7,187 European ancestry individuals	8q12.1	PLAG1	rs7815788-?	0.39	5E-6		0.07	[0.04-0.10] s.d. decrease	Illumina [229216]	N
1021	chr8	57185106	57185107	rs13207748	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	8q12.1		rs13207748-A	0.23	1E-8		5.67	z score increase	Affymetrix [9061022] (imputed)	N
1021	chr8	57185106	57185107	rs13207748	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	8q12.1		rs13207748-A	0.23	4E-14		7.55	z score increase	Affymetrix [9061022] (imputed)	N
1021	chr8	57185119	57185120	rs62515449	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	8q12.1	NR	rs62515449-T	0.2259	4E-13				NR [9056863] (imputed)	N
1021	chr8	57187355	57187356	rs62515452	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	8q12.1	RP11-140I16.2	rs62515452-T	NR	6E-16		0.0346999	[0.026-0.043] unit increase	Affymetrix [323123] (imputed)	N
1021	chr8	57187355	57187356	rs62515452	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	8q12.1	NR	rs62515452-?	NR	3E-10				Affymetrix [~ 8270000] (imputed)	N
1021	chr8	57191450	57191451	rs62515454	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	8q12.1	intergenic	rs62515454-T	0.1822	2E-55		0.0382	[0.033-0.043] unit increase	Affymetrix [18391927] (imputed)	N
1021	chr8	57193281	57193282	rs62515456	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	8q12.1		rs62515456-G	0.23	4E-20		9.19	z score increase	Affymetrix [9061022] (imputed)	N
1021	chr8	57193281	57193282	rs62515456	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	8q12.1	NR	rs62515456-G	0.2286	8E-9				NR [9056863] (imputed)	N
1021	chr8	57194162	57194163	rs7460090	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	8q12.1	SDR16C5	rs7460090-T	0.87	8E-27		0.058	[NR] unit increase	Affymetrix, Illumina [2834208] (imputed)	N
1021	chr8	57195151	57195153	rs200491701	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	8q12.1	SDR16C5	rs200491701-T	0.023	5E-6		0.1671	[0.096-0.239] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1021	chr8	57200361	57200362	rs7815909	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	8q12.1	CHCHD7, RDHE2	rs7815909-A	0.87	5E-25		0.102	[0.075-0.129] unit increase	Affymetrix, Illumina [2704730] (imputed)	N
1021	chr8	57205472	57205472	rs11270967	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	8q12.1	SDR16C5	rs11270967-A	0.9636	6E-7		0.1173	[0.071-0.163] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1021	chr8	57209245	57209246	rs4075154	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	8q12.1	RDHE2	rs4075154-A	0.87	3E-9		1.29	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
1021	chr8	57210605	57210606	rs4077818	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	8q12.1	Intergenic	rs4077818-?		2E-6		1.04	[1.02-1.06]	Illumina [7645193] (imputed)	N
1021	chr8	57214371	57214372	rs4409393	30718454	Arnau-Soler A	2019-02-04	Transl Psychiatry	Genome-wide by environment interaction studies of depressive symptoms and psychosocial stress in UK Biobank and Generation Scotland.	Depressive symptoms x dependent stressful life events interaction (2df test)	4,919 European ancestry individuals	NA	8q12.1	SDR16C5	rs4409393-A	0.3665	2E-6		0.0193113	NR unit decrease	Illumina [560351]	N
1021	chr8	57231199	57231200	rs12056722	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	8q12.1	SDR16C5	rs12056722-T	NR	5E-12		0.0201251	[0.014-0.026] unit increase	Affymetrix [321016] (imputed)	N
1021	chr8	57239133	57239133	rs528176153	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	8q12.1	NR	rs528176153-CAA	0.285455	6E-10		0.0663324	[0.044-0.089] unit increase	Affymetrix [21375087] (imputed)	N
1021	chr8	57239921	57239922	rs13268112	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	8q12.1	SDR16C5	rs13268112-G	NR	1E-8		0.0181497	[0.012-0.024] unit increase	Affymetrix [323123] (imputed)	N
1021	chr8	57259145	57259146	rs78329725	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	8q12.1	SDR16C5	rs78329725-G	NR	2E-20		0.0300315	[0.024-0.036] unit increase	Affymetrix [321016] (imputed)	N
1021	chr8	57259145	57259146	rs78329725	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	8q12.1	SDR16C5	rs78329725-G	NR	7E-15		0.0274387	[0.021-0.034] unit increase	Affymetrix [323123] (imputed)	N
1022	chr8	57283747	57283748	rs376362701	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	8q12.1	SDR16C5, SDR16C6P	rs376362701-?	NR	7E-12		0.16568246	[0.12-0.21] unit decrease	Illumina [27896057] (imputed)	N
1022	chr8	57284954	57284955	rs149551507	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in diabetes mellitus	153 Korean ancestry cases, 5,161 Korean ancestry controls	NA	8q12.1		rs149551507-C	0.01445	5E-6		4.043	[2.225-7.347]	Affymetrix [7975321] (imputed)	N
1022	chr8	57313905	57313906	rs12545109	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	8q12.1	SDR16C6P	rs12545109-A	0.225	9E-6	(Light activity )	0.04	[NR] min/d increase	Illumina [899892]	N
1022	chr8	57351561	57351562	rs34820711	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	8q12.1	NR	rs34820711-T	0.797	7E-43	(Proenkephalin-A, PENK.9076.25.3)	0.45	[0.39-0.51] unit decrease	Affymetrix [10572788] (imputed)	N
1022	chr8	57359636	57359637	rs139744105	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	8q12.1		rs139744105-?	NR	6E-15				NR [~ 8900000] (imputed)	N
1022	chr8	57361292	57361293	rs2576575	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PENK	5,357 Icelandic ancestry individuals	NA	8q12.1		rs2576575-T	0.4562	2E-128		0.422166	[0.39-0.46] unit decrease	Illumina [7506463] (imputed)	N
1022	chr8	57361598	57361599	rs2576576	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	8q12.1	RP11-17A4.2	rs2576576-A	0.3245	7E-9		0.012594559	[0.0083-0.0169] unit increase	Affymetrix [up to 18485882] (imputed)	N
1022	chr8	57376780	57376781	rs2670014	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	8q12.1	PENK	rs2670014-C	0.544375	8E-70	(PENK, 9076_25_3)	0.42252797	[0.38-0.47] unit increase	Illumina [> 1000000] (imputed)	N
1022	chr8	57376780	57376781	rs2670014	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	8q12.1	PENK	rs2670014-T	0.474	1E-87	(Proenkephalin-A, PENK.9076.25.3)	0.47	[0.43-0.51] unit decrease	Affymetrix [10572788] (imputed)	N
1022	chr8	57382785	57382786	rs34242338	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	8q12.1	RP11-17A4.2	rs34242338-T	NR	3E-11		0.0271907	[0.019-0.035] unit increase	Affymetrix [321016] (imputed)	N
1022	chr8	57382785	57382786	rs34242338	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	8q12.1	RP11-17A4.2	rs34242338-T	NR	4E-9		0.0260269	[0.017-0.035] unit increase	Affymetrix [323123] (imputed)	N
1022	chr8	57382785	57382786	rs34242338	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	8q12.1	NR	rs34242338-T	0.139448	4E-10		0.0624023	[0.043-0.082] unit increase	Affymetrix [17914406] (imputed)	N
1022	chr8	57384995	57384996	rs2670029	29953918	Deng C	2018-06-25	Gene	Identification of three novel loci of ALDH2 Gene for Serum Folate levels in a Male Chinese Population by Genome-Wide Association Study.	Serum folate levels	1,999 Han Chinese ancestry individuals	NA	8q12.1	LOC389662	rs2670029-?	NR	4E-7				Illumina [1940243] (imputed)	N
1023	chr8	57424873	57424874	rs2582405	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Problematic alcohol use	435,563 European ancestry individuals	NA	8q12.1	PENK	rs2582405-T	0.237	9E-9		5.751	[NR] z score increase	Affymetrix [14069427] (imputed)	N
1023	chr8	57433940	57433941	rs2246873	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	8q12.1		rs2246873-A	0.545	3E-14	(conditional-joint)	0.0107	[0.008-0.0134] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1023	chr8	57436576	57436577	rs1866823	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	8q12.1	RP11-17A4.2, LINC00968	rs1866823-A	0.4481	3E-9		0.012054117	[0.0081-0.016] unit increase	Affymetrix [up to 18485882] (imputed)	N
1023	chr8	57436576	57436577	rs1866823	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	8q12.1		rs1866823-A	0.5444	3E-14		0.0107	[0.008-0.0134] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1023	chr8	57436576	57436577	rs1866823	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	8q12.1	Intergenic	rs1866823-A	0.5444	5E-14	(MTAG)	0.0099	[0.0074-0.0124] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1023	chr8	57483012	57483013	rs62515938	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	8q12.1	NR	rs62515938-C	0.7395	3E-8		0.0286	[0.018-0.039] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
1023	chr8	57487312	57487313	rs56271251	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PENK	5,357 Icelandic ancestry individuals	NA	8q12.1		rs56271251-T	0.2564	6E-63		0.34726	[0.31-0.39] unit decrease	Illumina [7506463] (imputed)	N
1023	chr8	57494385	57494386	rs11990963	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	8q12.1	NR	rs11990963-T	0.263	1E-43	(Proenkephalin-A, PENK.9076.25.3)	0.38	[0.32-0.44] unit decrease	Affymetrix [10572788] (imputed)	N
1023	chr8	57496063	57496064	rs3887059	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	8q12.1	NR	rs3887059-G	0.7364	5E-12		0.0295	[0.021-0.038] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1023	chr8	57496476	57496477	rs2609982	32141793	Garman L	2020-03-06	Ocul Immunol Inflamm	Genome-Wide Association Study of Ocular Sarcoidosis Confirms HLA Associations and Implicates Barrier Function and Autoimmunity in African Americans.	Ocular sarcoidosis	260 African American cases, 1,551 African American controls	NA	8q12.1	NR	rs2609982-T	NR	5E-6		1.554	[1.29-1.88]	Illumina [13976150] (imputed)	N
1023	chr8	57505312	57505313	rs2610025	25917933	Zai CC	2014-11-20	J Psychiatr Res	A genome-wide association study of suicide severity scores in bipolar disorder.	Suicide in bipolar disorder	959 European ancestry individuals	NA	8q12.1	LINC00968, PENK	rs2610025-A		5E-6	(suicide behaviour severity)	0.02332	[0.0069-0.0397] unit decrease	Affymetrix, Illumina [2659407] (imputed)	N
1024	chr8	57542911	57542912	rs16920884	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Frontal pole volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	8q12.1	NR	rs16920884-?		4E-6				Illumina [4322238] (imputed)	N
1024	chr8	57558382	57558383	rs184394765	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	8q12.1	Intergenic	rs184394765-A	1.0	4E-6	(AA)	142.9	NR unit increase	Illumina [NR] (imputed)	N
1024	chr8	57565671	57565672	rs115260212	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8q12.1	NR	rs115260212-C	0.01045	6E-9	(FTH1)	0.1671	NR unit increase	Illumina [1671387] (imputed)	N
1024	chr8	57643997	57643998	rs1014085	32308125	Wolking S	2020-04-20	Pharmacogenomics	Pharmacoresponse in genetic generalized epilepsy: a genome-wide association study.	Response to levetiracetam in genetic generalized epilepsy	82 European ancestry responders, 127 European ancestry non-responders	NA	8q12.1	intergenic	rs1014085-?	NR	4E-6				Affymetrix, Illumina [at least 3287443] (imputed)	N
1024	chr8	57665018	57665019	rs4737446	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	8q12.1	intergenic	rs4737446-T	0.6944	5E-32		0.0243	[0.02-0.028] unit increase	Affymetrix [18391927] (imputed)	N
1024	chr8	57665018	57665019	rs4737446	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	8q12.1		rs4737446-?	NR	1E-45				NR [~ 8900000] (imputed)	N
1025	chr8	57802715	57802716	rs28624558	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	8q12.1		rs28624558-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1026	chr8	57817497	57817498	rs1508086	27325353	Matteini AM	2016-06-21	Aging Cell	GWAS analysis of handgrip and lower body strength in older adults in the CHARGE consortium.	Hand grip strength	27,581 European ancestry individuals	6,393 individuals	8q12.1	LINC00968, IMPAD1	rs1508086-T	0.44	4E-6		0.22	[0.12-0.32] kg increase	Affymetrix, Illumina [2725778] (imputed)	N
1026	chr8	57835234	57835235	rs17790828	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	8q12.1		rs17790828-A	0.31	7E-10		6.16	z score increase	Affymetrix [9061022] (imputed)	N
1026	chr8	57846712	57846713	rs141746753	27622933	Li QS	2016-09-13	Transl Psychiatry	Analysis of 23andMe antidepressant efficacy survey data: implication of circadian rhythm and neuroplasticity in bupropion response.	Response to selective serotonin reuptake inhibitors and depression	6,348 European ancestry responder cases, 191,357 European ancestry healthy controls	NA	8q12.1	IMPAD1, PENK	rs141746753-?		1E-6		3.2467532	[1.84-5.71]	Illumina [~ 12000000] (imputed)	N
1026	chr8	57876575	57876576	rs112433249	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IMPAD1	5,359 Icelandic ancestry individuals	NA	8q12.1		rs112433249-C	0.01635	2E-109		1.62068	[1.48-1.76] unit decrease	Illumina [7506463] (imputed)	N
1026	chr8	57876575	57876576	rs112433249	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	8q12.1	IMPAD1	rs112433249-T	0.99171875	2E-34	(IMPAD1, 9231_23_3)	1.6849508	[1.42-1.95] unit increase	Illumina [> 1000000] (imputed)	N
1026	chr8	57876575	57876576	rs112433249	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	8q12.1	IMPAD1	rs112433249-C	0.017	4E-65	(Inositol monophosphatase 3, IMPAD1.9231.23.3)	1.56	[1.38-1.74] unit decrease	Affymetrix [10572788] (imputed)	N
1026	chr8	57898354	57898355	rs36065736	24166409	Gelernter J	2014-01-01	Mol Psychiatry	Genome-wide association study of alcohol dependence:significant findings in African- and European-Americans including novel risk loci.	Alcohol dependence	4,629 African American individuals, 5,131 European ancestry individuals	801 African American individuals, 1,746 European ancestry individuals	8q12.1	IMPAD1	rs36065736-?	0.319	3E-7	(AA)	0.0224	NR unit increase (AA, GCD Discovery)	Illumina [up to 10421983] (imputed)	N
1026	chr8	57907161	57907162	rs3808629	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Hepatocyte growth factor levels	8,292 Finnish ancestry individuals	NA	8q12.1	NR	rs3808629-C		2E-6		0.7116	[0.42-1.01] SD units increase	NR [10700000] (imputed)	N
1027	chr8	58008280	58008281	rs7833294	25710614	Hong X	2015-02-24	Nat Commun	Genome-wide association study identifies peanut allergy-specific loci and evidence of epigenetic mediation in US children.	Milk allergy	291 European ancestry child cases, 144 European ancestry non-allergic non-sensitized normal child controls, 614 European ancestry uncertain phenotype child controls, 1,148 European ancestry uncertain phenotype adult controls	NA	8q12.1	IMPAD1, LOC286177	rs7833294-?	NR	7E-6				Illumina [6459842] (imputed)	N
1027	chr8	58026440	58026441	rs754788490	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	8q12.1	RNA5SP266	rs754788490-A	0.9987	4E-6		1.4321	[0.82-2.04] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1028	chr8	58147315	58147316	rs73682817	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	8q12.1		rs73682817-?	NR	8E-16				NR [~ 8900000] (imputed)	N
1029	chr8	58196494	58196495	rs10504229	27016271	Kornilov SA	2016-03-25	Pediatrics	Genome-Wide Association and Exome Sequencing Study of Language Disorder in an Isolated Population.	Developmental language disorder (linguistic errors)	149 isolated population cases, 210 isolated population controls	NA	8q12.1	LINC00588	rs10504229-A	0.16	6E-6		0.5	[NR] unit increase	Illumina [223580]	N
1029	chr8	58196494	58196495	rs10504229	27016271	Kornilov SA	2016-03-25	Pediatrics	Genome-Wide Association and Exome Sequencing Study of Language Disorder in an Isolated Population.	Developmental language disorder (linguistic errors)	149 isolated population cases, 210 isolated population controls	NA	8q12.1	LINC00588	rs10504229-?	0.162	4E-7	(Semantic/pragmatic)	0.508	[0.31-0.7] unit increase	Illumina [223580]	N
1029	chr8	58218062	58218063	rs16921981	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	8q12.1	NR	rs16921981-?	NR	4E-32				Affymetrix [NR]	N
1029	chr8	58291735	58291736	rs72652956	34356046	Oluwafemi OO	2021-07-01	Genes (Basel)	Genome-Wide Association Studies of Conotruncal Heart Defects with Normally Related Great Vessels in the United States.	Conotruncal heart defects with normally related great vessels	294 European ancestry cases, 2,976 European ancestry controls, 913 cases, 559 controls, 641 trios	NA	8q12.1		rs72652956-?	NR	5E-6				Affymetrix, Illumina [3311160] (imputed)	N
1029	chr8	58293377	58293378	rs6996802	34356046	Oluwafemi OO	2021-07-01	Genes (Basel)	Genome-Wide Association Studies of Conotruncal Heart Defects with Normally Related Great Vessels in the United States.	Conotruncal heart defects with normally related great vessels (without 22q.11.2 deletion syndrome)	294 European ancestry cases, 2,976 European ancestry controls, 641 trios	NA	8q12.1		rs6996802-?	NR	1E-6				Illumina [3311160] (imputed)	N
1029	chr8	58295620	58295621	rs72652966	28468790	Agopian AJ	2017-06-01	Circ Cardiovasc Genet	Genome-Wide Association Studies and Meta-Analyses for Congenital Heart Defects.	Conotruncal heart defects (inherited effects)	483 European ancestry trios, 406 European ancestry cases, 2,976 European ancestry controls, 355 European and other ancestry trios, 187 non-European ancestry trios.	NA	8q12.1	intergenic	rs72652966-?	NR	7E-6		1.444284	[1.231117-1.69436]	Illumina [at least 4756722] (imputed)	N
1030	chr8	58350710	58350711	rs76426299	30116032	Erlangsen A	2018-08-16	Mol Psychiatry	Genetics of suicide attempts in individuals with and without mental disorders: a population-based genome-wide association study.	Suicide attempts	6,024 European ancestry cases, 44,240 European ancestry controls	NA	8q12.1	Intergenic	rs76426299-A	0.0189	8E-7	(model 2)	1.6189	[1.24-1.99]	Illumina [11601089] (imputed)	N
1030	chr8	58449026	58449027	rs113036800	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 21, depth of nasal alae)	2,187 European ancestry individuals	NA	8q12.1	intergenic	rs113036800-T	0.01467	1E-8		0.6913	[0.45-0.93] unit increase	Illumina [10677593] (imputed)	N
1030	chr8	58452228	58452229	rs72657107	29346644	Yan Q	2018-01-15	Hum Mol Genet	Genome-wide Analysis of Disease Progression in Age-related Macular Degeneration.	Disease progression in age-related macular degeneration (adjusted for baseline)	1,105 progressed eyes and 3,912 non-progressed eyes from 2,721 European ancestry individuals	NA	8q12.1	LINC00588, FAM110B	rs72657107-A	0.06	1E-6		1.72		Illumina [8974355] (imputed)	N
1031	chr8	58458466	58458467	rs138165528	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in dyslipidemia	295 Korean ancestry cases, 20,474 Korean ancestry controls	NA	8q12.1		rs138165528-A	0.01075	9E-6		3.017	[1.85199999999999-4.913]	Affymetrix [7975321] (imputed)	N
1031	chr8	58553323	58553324	rs976900	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Bacteroides)	1,068 Japanese ancestry individuals	NA	8q12.1	RP11-388G22.1	rs976900-T	0.38	5E-6	(male)	0.0569	[0.033-0.081] unit increase	Illumina [6380737] (imputed)	N
1032	chr8	58600993	58600994	rs7005602	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	8q12.1		rs7005602-C	0.38	4E-9		5.87	z score increase	Affymetrix [9061022] (imputed)	N
1033	chr8	58789080	58789081	rs10504249	24165912	He J	2013-10-28	Circ Cardiovasc Genet	Genome-wide association study identifies 8 novel loci associated with blood pressure responses to interventions in Han Chinese.	Blood pressure measurement (low sodium intervention)	1,850 Han Chinese ancestry individuals	660 Han Chinese ancestry individuals	8q12.1	FAM110B	rs10504249-G	0.02	4E-7	(MAP, response to intervention)	2.95	[1.81-4.09] mmHg increase	Affymetrix [2216774] (imputed)	N
1033	chr8	58789080	58789081	rs10504249	24165912	He J	2013-10-28	Circ Cardiovasc Genet	Genome-wide association study identifies 8 novel loci associated with blood pressure responses to interventions in Han Chinese.	Blood pressure measurement (low sodium intervention)	1,850 Han Chinese ancestry individuals	660 Han Chinese ancestry individuals	8q12.1	FAM110B	rs10504249-G	0.02	1E-7	(DBP, response to intervention)	3.22	[2.02-4.42] mmHg increase	Affymetrix [2216774] (imputed)	N
1033	chr8	58815076	58815077	rs58174579	29246731	de Toro-Martin J	2017-11-02	J Clin Lipidol	A common variant in ARHGEF10 alters delta-6 desaturase activity and influence susceptibility to hypertriglyceridemia.	Delta-5 desaturase activity response to n3-polyunsaturated fat supplement	81 extreme responder individuals, 60 non-responder individuals	NA	8q12.1	intergenic	rs58174579-G	0.03	1E-9		2.787	[1.94-3.63] unit increase	Illumina [2668805]	N
1033	chr8	58840923	58840924	rs1992045	20889312	Wang KS	2010-10-01	Schizophr Res	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	8q12.1	FAM110B	rs1992045-?	NR	2E-7		1.563	[NR]	Affymetrix [722112]	N
1033	chr8	58844021	58844022	rs13250896	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8q12.1	LOC137886	rs13250896-?	NR	5E-6	(isocitrate)	0.34431258	[0.2-0.49] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1035	chr8	58986458	58986459	rs13273891	24556642	Zeng Z	2014-02-18	Caries Res	Genome-wide association study of primary dentition pit-and-fissure and smooth surface caries.	Pit-and-Fissure caries	979 European ancestry individuals	NA	8q12.1	FAM110B	rs13273891-A	0.1933	2E-6		0.953	[NR] unit increase	Illumina [1216074] (imputed)	N
1035	chr8	59007789	59007790	rs541558502	30298529	Stanaway IB	2018-10-08	Genet Epidemiol	The eMERGE genotype set of 83,717 subjects imputed to ~40 million variants genome wide and association with the herpes zoster medical record phenotype.	Shingles	3,201 European ancestry cases, 34,960 European ancestry controls, 398 African American cases, 5,922 African American controls, 756 Asian ancestry individuals	NA	8q12.1	FAM110B	rs541558502-A	0.0004	1E-8		9.754	NR	Affymetrix, Illumina [39127678] (imputed)	N
1035	chr8	59104798	59104799	rs1395613	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	8q12.1	NR	rs1395613-C	NR	4E-11		0.0435	[0.031-0.056] unit decrease	Affymetrix [9000000] (imputed)	N
1035	chr8	59104798	59104799	rs1395613	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	8q12.1	NR	rs1395613-C	NR	3E-11		0.044	[0.031-0.057] unit decrease	Affymetrix [9000000] (imputed)	N
1036	chr8	59145768	59145769	rs118122713	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 2, vertical position of orbits relative to midface)	2,187 European ancestry individuals	NA	8q12.1	NR	rs118122713-T	0.007107	4E-6		0.8324	[0.48-1.18] unit increase	Illumina [10677593] (imputed)	N
1036	chr8	59148916	59148917	rs77987064	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	8q12.1	NR	rs77987064-T	NR	3E-12		0.0399	[0.029-0.051] unit increase	Affymetrix [9000000] (imputed)	N
1036	chr8	59148916	59148917	rs77987064	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	8q12.1	NR	rs77987064-T	NR	2E-10		0.0365	[0.025-0.048] unit increase	Affymetrix [9000000] (imputed)	N
1036	chr8	59178571	59178572	rs62512299	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	8q12.1	NR	rs62512299-G	NR	6E-11		0.0256	[0.018-0.033] unit decrease	Affymetrix [9000000] (imputed)	N
1037	chr8	59261868	59261869	rs2925663	27802415	Salvi E	2016-10-31	Hypertension	Genome-Wide and Gene-Based Meta-Analyses Identify Novel Loci Influencing Blood Pressure Response to Hydrochlorothiazide.	Systolic blood pressure response to hydrochlorothiazide in hypertension	1,739 European ancestry individuals	430 African American individuals	8q12.1	FAM110B, UBXN2B	rs2925663-T	0.12	7E-6	(EA)	1.4	[NR] mmHg decrease	Affymetrix, Illumina [up to 2500000] (imputed)	N
1037	chr8	59274781	59274783	rs61527293	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	8q12.1		rs61527293-C	NR	2E-22		0.0197	[0.016-0.024] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
1037	chr8	59295558	59295559	rs75816778	27629369	Gao J	2016-09-15	Neuropsychopharmacology	Genome-Wide Association Study of Loneliness Demonstrates a Role for Common Variation.	Loneliness	2,075 European ancestry cases, 3,875 European ancestry controls, 427 African American cases, 398 African American controls, 294 Hispanic cases, 327 Hispanic controls, 57 cases, 73 controls	NA	8q12.1	LOC101929528, UBXN2B	rs75816778-?	NR	5E-6	(EA)	0.167	[0.095-0.239] unit increase	Illumina [7176022] (imputed)	N
1037	chr8	59305289	59305290	rs1160133	26528553	Davenport ER	2015-11-03	PLoS One	Genome-Wide Association Studies of the Human Gut Microbiota.	Gut microbiome composition (summer)	91 Hutterite individuals	NA	8q12.1	NR	rs1160133-?	NR	3E-6	(genus_Desulfovibrio)	0.9180004	[0.51-1.33] unit increase	Affymetrix [210924]	N
1037	chr8	59311696	59311697	rs1030431	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D level variance	318,851 European ancestry individuals	NA	8q12.1		rs1030431-A	0.33	8E-9		0.0155	[0.01-0.021] unit decrease	NR [6098063] (imputed)	N
1037	chr8	59311696	59311697	rs1030431	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls	NA	8q12.1	UBXN2B	rs1030431-A	0.33226	2E-8		0.03366996	[0.022-0.045] unit increase	Affymetrix [7288503] (imputed)	N
1037	chr8	59311696	59311697	rs1030431	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	8q12.1		rs1030431-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1037	chr8	59311696	59311697	rs1030431	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q12.1	NR	rs1030431-A	NR	4E-21		0.043	unit increase	Affymetrix [at least 7091467] (imputed)	N
1037	chr8	59311696	59311697	rs1030431	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q12.1	NR	rs1030431-A	0.335	1E-18	(EA)	0.043	unit increase	Affymetrix [at least 7091467] (imputed)	N
1037	chr8	59311696	59311697	rs1030431	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q12.1	NR	rs1030431-A	NR	2E-18		0.041	unit increase	Affymetrix [at least 7091467] (imputed)	N
1037	chr8	59311696	59311697	rs1030431	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q12.1	NR	rs1030431-A	0.335	6E-16	(EA)	0.041	unit increase	Affymetrix [at least 7091467] (imputed)	N
1037	chr8	59323246	59323247	rs55704109	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total phospholipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	8q12.1		rs55704109-G	0.506932	5E-8		0.0223639	[0.014-0.03] unit increase	NR [11722792] (imputed)	N
1037	chr8	59324161	59324162	rs2859998	23496005	Luca G	2013-03-18	J Sleep Res	Clinical, polysomnographic and genome-wide association analyses of narcolepsy with cataplexy: a European Narcolepsy Network study.	Narcolepsy with cataplexy	585 European ancestry cases	387 European ancestry cases	8q12.1	UBXN2B	rs2859998-?	NR	1E-7	(Age EDS onset)	4.4145	[NR] unit decrease	NR [NR]	N
1037	chr8	59336555	59336556	rs10957054	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	8q12.1	UBXN2B	rs10957054-T	NR	5E-6	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1037	chr8	59336555	59336556	rs10957054	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	8q12.1	UBXN2B	rs10957054-T	NR	3E-8				Affymetrix, Illumina [NR] (imputed)	N
1037	chr8	59336555	59336556	rs10957054	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	8q12.1	UBXN2B	rs10957054-T	NR	2E-6	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1037	chr8	59336555	59336556	rs10957054	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	8q12.1	UBXN2B	rs10957054-T	NR	1E-7				Affymetrix, Illumina [NR] (imputed)	N
1037	chr8	59336555	59336556	rs10957054	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	8q12.1	UBXN2B	rs10957054-T	NR	8E-6	(EA)	0.012	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1037	chr8	59336555	59336556	rs10957054	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	8q12.1	UBXN2B	rs10957054-T	NR	2E-8		0.011	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1037	chr8	59336555	59336556	rs10957054	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	8q12.1	UBXN2B	rs10957054-T	NR	1E-7		0.012	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1037	chr8	59336555	59336556	rs10957054	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	8q12.1	UBXN2B	rs10957054-T	NR	3E-27				Affymetrix, Illumina [NR] (imputed)	N
1037	chr8	59336555	59336556	rs10957054	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	8q12.1	UBXN2B	rs10957054-T	NR	2E-23	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1037	chr8	59336555	59336556	rs10957054	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	8q12.1	UBXN2B	rs10957054-T	NR	3E-25	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1037	chr8	59336555	59336556	rs10957054	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	8q12.1	UBXN2B	rs10957054-T	NR	2E-30				Affymetrix, Illumina [NR] (imputed)	N
1037	chr8	59336555	59336556	rs10957054	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	8q12.1	UBXN2B	rs10957054-T	NR	1E-6	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
1037	chr8	59336555	59336556	rs10957054	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	8q12.1	UBXN2B	rs10957054-T	NR	4E-13	(EA)	1.351	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1037	chr8	59336555	59336556	rs10957054	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	8q12.1	UBXN2B	rs10957054-T	NR	1E-13		1.179	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1037	chr8	59336555	59336556	rs10957054	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	8q12.1	UBXN2B	rs10957054-T	NR	7E-9	(EA)	1.46	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1037	chr8	59336555	59336556	rs10957054	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	8q12.1	UBXN2B	rs10957054-T	NR	1E-9		1.174	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1037	chr8	59338855	59338856	rs13253288	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x short total sleep time interaction (2df test)	2,974 African American short sleepers, 365 Chinese ancestry short sleepers, 110 Asian ancestry short sleepers, at least 8,230 European ancestry short sleepers, 1,079 Hispanic/Latino short sleepers, 11,801 African American controls, 1,425 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,097 European ancestry controls, 4,023 Hispanic/Latino controls	at least 214 African American short sleepers, 629 East Asian ancestry short sleepers, up to 6,761 European ancestry short sleepers, 2,473 Hispanic short sleepers, at least 913 African American controls, 2,504 East Asian ancestry controls, up to 26,764 European ancestry controls, 9,854 Hispanic controls	8q12.1	CYP7A1	rs13253288-?	NR	3E-14		1.147	[0.78-1.52] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
1037	chr8	59347183	59347184	rs1993453	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Monounsaturated fatty acid levels	115,006 European ancestry individuals	NA	8q12.1		rs1993453-A	0.336927	2E-9		0.02592	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
1037	chr8	59353533	59353534	rs13277801	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q12.1	NR	rs13277801-C	NR	5E-23		0.044	unit increase	Affymetrix [at least 7091467] (imputed)	N
1037	chr8	59353533	59353534	rs13277801	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q12.1	NR	rs13277801-C	0.34	2E-21	(EA)	0.046	unit increase	Affymetrix [at least 7091467] (imputed)	N
1037	chr8	59353533	59353534	rs13277801	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q12.1	NR	rs13277801-C	NR	4E-20		0.042	unit increase	Affymetrix [at least 7091467] (imputed)	N
1037	chr8	59353533	59353534	rs13277801	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q12.1	NR	rs13277801-C	0.34	2E-18	(EA)	0.044	unit increase	Affymetrix [at least 7091467] (imputed)	N
1037	chr8	59353533	59353534	rs13277801	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Total cholesterol levels	32,576 East Asian ancestry individuals, 187,365 European ancestry individuals	10,855 Chinese ancestry individuals	8q12.1	CYP7A1	rs13277801-T	0.653	8E-26	(Trans-ethnic initial)	0.0383	[0.031-0.045] unit decrease (EA Beta values)	Affymetrix, Illumina [up to 1900000] (imputed)	N
1037	chr8	59353533	59353534	rs13277801	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	LDL cholesterol levels	32,285 East Asian ancestry individuals, 173,082 European ancestry individuals	8,478 Chinese ancestry individuals	8q12.1	CYP7A1	rs13277801-T	0.653	4E-19	(Trans-ethnic initial)	0.0338	[0.026-0.041] unit decrease (EA Beta value)	Affymetrix, Illumina [~ 1900000] (imputed)	N
1037	chr8	59366213	59366214	rs10957055	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	8q12.1	NR	rs10957055-T	NR	1E-9		0.0266	[0.018-0.035] unit increase	Affymetrix [9000000] (imputed)	N
1037	chr8	59370319	59370320	rs4738679	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very small VLDL	115,082 European ancestry individuals	NA	8q12.1		rs4738679-G	0.333288	1E-10		0.0277336	[0.019-0.036] unit increase	NR [11722792] (imputed)	N
1037	chr8	59370319	59370320	rs4738679	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very small VLDL	115,082 European ancestry individuals	NA	8q12.1		rs4738679-G	0.333288	4E-11		0.0284459	[0.02-0.037] unit increase	NR [11722792] (imputed)	N
1037	chr8	59370319	59370320	rs4738679	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	8q12.1		rs4738679-G	0.333288	2E-10		0.0274887	[0.019-0.036] unit increase	NR [11722792] (imputed)	N
1037	chr8	59370319	59370320	rs4738679	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very small VLDL particles	115,082 European ancestry individuals	NA	8q12.1		rs4738679-G	0.333288	2E-10		0.0276635	[0.019-0.036] unit increase	NR [11722792] (imputed)	N
1037	chr8	59370319	59370320	rs4738679	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	8q12.1		rs4738679-G	0.333288	2E-8		0.0240684	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
1037	chr8	59370319	59370320	rs4738679	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q12.1	NR	rs4738679-G	NR	3E-25		0.047	unit increase	Affymetrix [at least 7091467] (imputed)	N
1037	chr8	59370319	59370320	rs4738679	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q12.1	NR	rs4738679-G	0.337	3E-22	(EA)	0.047	unit increase	Affymetrix [at least 7091467] (imputed)	N
1037	chr8	59370319	59370320	rs4738679	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q12.1	NR	rs4738679-G	NR	3E-22		0.044	unit increase	Affymetrix [at least 7091467] (imputed)	N
1037	chr8	59370319	59370320	rs4738679	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q12.1	NR	rs4738679-G	0.337	3E-19	(EA)	0.045	unit increase	Affymetrix [at least 7091467] (imputed)	N
1037	chr8	59371724	59371725	rs7826120	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very small VLDL	115,082 European ancestry individuals	NA	8q12.1		rs7826120-T	0.333396	2E-8		0.0239247	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
1037	chr8	59371724	59371725	rs7826120	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large LDL	115,082 European ancestry individuals	NA	8q12.1		rs7826120-T	0.333396	4E-9		0.0252763	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
1037	chr8	59371724	59371725	rs7826120	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in LDL	115,082 European ancestry individuals	NA	8q12.1		rs7826120-T	0.333396	7E-10		0.0265293	[0.018-0.035] unit increase	NR [11722792] (imputed)	N
1037	chr8	59371724	59371725	rs7826120	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in IDL	115,082 European ancestry individuals	NA	8q12.1		rs7826120-T	0.333396	1E-8		0.0245991	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
1038	chr8	59377356	59377357	rs6471717	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-6 fatty acid levels	115,006 European ancestry individuals	NA	8q12.1		rs6471717-G	0.336924	4E-12		0.0295948	[0.021-0.038] unit increase	NR [11722792] (imputed)	N
1038	chr8	59377356	59377357	rs6471717	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Linoleic acid levels	115,006 European ancestry individuals	NA	8q12.1		rs6471717-G	0.336924	3E-13		0.0314069	[0.023-0.04] unit increase	NR [11722792] (imputed)	N
1038	chr8	59377356	59377357	rs6471717	30504769	Ferkingstad E	2018-11-30	Nat Commun	Genome-wide association meta-analysis yields 20 loci associated with gallstone disease.	Gallstone disease	27,174 European ancestry cases, 736,838 European ancestry controls	NA	8q12.1	CYP7A1	rs6471717-?		1E-25		1.11	[1.09-1.13]	Affymetrix, Illumina [43000000] (imputed)	N
1038	chr8	59377356	59377357	rs6471717	27094239	Joshi AD	2016-04-16	Gastroenterology	Four Susceptibility Loci for Gallstone Disease Identified in a Meta-analysis of Genome-Wide Association Studies.	Gallstone disease	8,720 European ancestry cases,  55,152 European ancestry controls	6,489 European ancestry cases, 62,797 European ancestry controls, 1,499 African American cases, 9,145 African American controls, 1,056 Hispanic cases, 2,403 Hispanic controls	8q12.1	CYP7A1, UBXN2B	rs6471717-G	0.35	3E-6	(EA)	1.11	[1.08-1.14]	Affymetrix, Illumina [at least 2305318] (imputed)	N
1038	chr8	59382091	59382092	rs59985577	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Thalamus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	8q12.1	NR	rs59985577-?		7E-6				Illumina [4322238] (imputed)	N
1038	chr8	59382310	59382311	rs116961202	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Total cholesterol levels	128,305 Japanese ancestry individuals	NA	8q12.1	UBXN2B, CYP7A1	rs116961202-?	NR	5E-18		0.0377	[0.029-0.046] unit decrease novel	Illumina [6108953] (imputed)	N
1038	chr8	59385918	59385919	rs2326077	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small VLDL	115,082 European ancestry individuals	NA	8q12.1		rs2326077-C	0.336771	4E-11		0.0284114	[0.02-0.037] unit increase	NR [11722792] (imputed)	N
1038	chr8	59385918	59385919	rs2326077	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	8q12.1		rs2326077-C	0.336771	4E-11		0.0283474	[0.02-0.037] unit increase	NR [11722792] (imputed)	N
1038	chr8	59385918	59385919	rs2326077	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total free cholesterol levels	115,082 European ancestry individuals	NA	8q12.1		rs2326077-C	0.336771	2E-9		0.0257075	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
1038	chr8	59385918	59385919	rs2326077	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total fatty acid levels	115,006 European ancestry individuals	NA	8q12.1		rs2326077-C	0.336755	1E-11		0.0293367	[0.021-0.038] unit increase	NR [11722792] (imputed)	N
1038	chr8	59385918	59385919	rs2326077	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Remnant cholesterol (non-HDL, non-LDL -cholesterol)	115,082 European ancestry individuals	NA	8q12.1		rs2326077-C	0.336771	5E-10		0.027081	[0.019-0.036] unit increase	NR [11722792] (imputed)	N
1038	chr8	59385918	59385919	rs2326077	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Polyunsaturated fatty acid levels	115,006 European ancestry individuals	NA	8q12.1		rs2326077-C	0.336755	9E-12		0.0289922	[0.021-0.037] unit increase	NR [11722792] (imputed)	N
1038	chr8	59385918	59385919	rs2326077	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small VLDL	115,082 European ancestry individuals	NA	8q12.1		rs2326077-C	0.336771	1E-10		0.0281991	[0.02-0.037] unit increase	NR [11722792] (imputed)	N
1038	chr8	59385918	59385919	rs2326077	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	8q12.1		rs2326077-C	0.336771	2E-9		0.0264191	[0.018-0.035] unit increase	NR [11722792] (imputed)	N
1038	chr8	59385918	59385919	rs2326077	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	8q12.1		rs2326077-C	0.336771	6E-11		0.0285984	[0.02-0.037] unit increase	NR [11722792] (imputed)	N
1038	chr8	59385918	59385919	rs2326077	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of VLDL particles	115,082 European ancestry individuals	NA	8q12.1		rs2326077-C	0.336771	4E-12		0.0300909	[0.022-0.039] unit increase	NR [11722792] (imputed)	N
1038	chr8	59385918	59385919	rs2326077	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small VLDL	115,082 European ancestry individuals	NA	8q12.1		rs2326077-C	0.336771	5E-9		0.0255643	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
1038	chr8	59385918	59385919	rs2326077	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in VLDL	115,082 European ancestry individuals	NA	8q12.1		rs2326077-C	0.336771	1E-10		0.0282929	[0.02-0.037] unit increase	NR [11722792] (imputed)	N
1038	chr8	59385918	59385919	rs2326077	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	8q12.1		rs2326077-C	0.336771	2E-9		0.0261295	[0.018-0.035] unit increase	NR [11722792] (imputed)	N
1038	chr8	59385918	59385919	rs2326077	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	8q12.1		rs2326077-C	0.336771	3E-8		0.0241925	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
1038	chr8	59388564	59388565	rs2081687	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large HDL	115,082 European ancestry individuals	NA	8q12.1		rs2081687-T	0.336916	6E-13		0.0306904	[0.022-0.039] unit increase	NR [11722792] (imputed)	N
1038	chr8	59388564	59388565	rs2081687	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small VLDL	115,082 European ancestry individuals	NA	8q12.1		rs2081687-T	0.336916	3E-9		0.0249881	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
1038	chr8	59388564	59388565	rs2081687	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small LDL	115,082 European ancestry individuals	NA	8q12.1		rs2081687-T	0.336916	3E-11		0.0281197	[0.02-0.036] unit increase	NR [11722792] (imputed)	N
1038	chr8	59388564	59388565	rs2081687	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium VLDL	115,082 European ancestry individuals	NA	8q12.1		rs2081687-T	0.336916	2E-10		0.0270453	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
1038	chr8	59388564	59388565	rs2081687	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small VLDL particles	115,082 European ancestry individuals	NA	8q12.1		rs2081687-T	0.336916	6E-11		0.0281452	[0.02-0.037] unit increase	NR [11722792] (imputed)	N
1038	chr8	59388564	59388565	rs2081687	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cholelithiasis	26,122 European ancestry cases, 461,431 European ancestry controls, 9,305 East Asian ancestry cases, 168,253 East Asian ancestry controls	NA	8q12.1		rs2081687-C	NR	6E-39		0.1177	[0.1-0.14] unit decrease	Affymetrix, Illumina [25844936] (imputed)	N
1038	chr8	59388564	59388565	rs2081687	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Bile acid(DCA)_[M-H]1- levels	13,814 British ancestry individuals	NA	8q12.1		rs2081687-T	NR	3E-10		0.0752097	[0.052-0.099] unit decrease	Affymetrix [87696910] (imputed)	N
1038	chr8	59388564	59388565	rs2081687	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	8q12.1	CYP7A1	rs2081687-T	0.336796	6E-36		0.0262292	[0.022-0.03] unit increase	Affymetrix [NR] (imputed)	N
1038	chr8	59388564	59388565	rs2081687	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	8q12.1	NR	rs2081687-T	0.337239	7E-10		0.0131537	[0.009-0.0173] unit increase	Affymetrix [16583148] (imputed)	N
1038	chr8	59388564	59388565	rs2081687	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q12.1	NR	rs2081687-T	NR	7E-23		0.044	unit increase	Affymetrix [at least 7091467] (imputed)	N
1038	chr8	59388564	59388565	rs2081687	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q12.1	NR	rs2081687-T	0.341	4E-21	(EA)	0.046	unit increase	Affymetrix [at least 7091467] (imputed)	N
1038	chr8	59388564	59388565	rs2081687	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q12.1	NR	rs2081687-T	NR	4E-20		0.042	unit increase	Affymetrix [at least 7091467] (imputed)	N
1038	chr8	59388564	59388565	rs2081687	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q12.1	NR	rs2081687-T	0.341	2E-18	(EA)	0.044	unit increase	Affymetrix [at least 7091467] (imputed)	N
1038	chr8	59388564	59388565	rs2081687	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	8q12.1	CYP7A1	rs2081687-T	0.36	1E-7		0.031	[NR] unit increase	NR [NR] (imputed)	N
1038	chr8	59388564	59388565	rs2081687	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	8q12.1	CYP7A1	rs2081687-T	0.36	9E-12		0.038	[NR] unit increase	NR [NR] (imputed)	N
1038	chr8	59388564	59388565	rs2081687	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	LDL cholesterol	95,454 European ancestry individuals	NA	8q12.1	CYP7A1	rs2081687-A	0.35	4E-9		0.95	[0.6-1.3] mg/dL increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1038	chr8	59388564	59388565	rs2081687	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	Cholesterol, total	100,184 European ancestry individuals	NA	8q12.1	CYP7A1	rs2081687-A	0.35	9E-13		1.26	[0.87-1.65] mg/dL increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1038	chr8	59391254	59391255	rs28612536	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	8q12.1	CYP7A1	rs28612536-A	0.757773	5E-24		0.00592336	[0.0047-0.0071] unit increase	Affymetrix [13995440] (imputed)	N
1038	chr8	59392323	59392324	rs9297994	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	8q12.1		rs9297994-A	NR	4E-25		0.0232	[0.019-0.028] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
1038	chr8	59392323	59392324	rs9297994	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	8q12.1		rs9297994-A	NR	6E-38		0.0282	[0.024-0.033] unit decrease	Affymetrix, Illumina [20536134] (imputed)	N
1038	chr8	59392323	59392324	rs9297994	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	8q12.1	CYP7A1	rs9297994-G	0.335462	7E-40		0.0291068	[0.025-0.033] unit increase	Affymetrix [NR] (imputed)	N
1038	chr8	59392323	59392324	rs9297994	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	8q12.1	SDCBP	rs9297994-?	NR	3E-20		0.0254	[0.02-0.03] unit increase	Affymetrix [5701386] (imputed)	N
1038	chr8	59392323	59392324	rs9297994	30670697	Kilpelainen TO	2019-01-22	Nat Commun	Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity.	LDL cholesterol x physical activity interaction (2df test)	7,260 African American inactive individuals, 12,761 African American active individuals, 2,740 Asian ancestry inactive individuals, 3,615 Asian ancestry active individuals, 22,378 European ancestry inactive individuals, 55,310 European ancestry active individuals, 2,163 Hispanic or Latin American inactive individuals, 3,461 Hispanic or Latin American active individuals	571 African American inactive individuals, 1,521 African American active individuals, 1,217 South African Black ancestry inactive individuals, 389 South African Black ancestry active individuals, 2,495 East Asian ancestry inactive individuals, 1,947 East Asian ancestry active individuals,  724 South Asian ancestry inactive individuals, 1,425 South Asian ancestry active individuals,  33,796 European ancestry inactive individuals, 50,812 European ancestry active individuals, 2,578 Hispanic inactive individuals, 8,661 Hispanic active individuals	8q12.1	NR	rs9297994-A	0.699	2E-18				Affymetrix, Illumina [at least 2500000] (imputed)	N
1038	chr8	59392323	59392324	rs9297994	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	8q12.1	intergenic	rs9297994-A	0.6906	8E-14		0.0227	[0.017-0.029] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1038	chr8	59392323	59392324	rs9297994	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	8q12.1	intergenic	rs9297994-A	0.6903	1E-33		0.0363	[0.03-0.042] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1038	chr8	59392323	59392324	rs9297994	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	8q12.1	intergenic	rs9297994-A	0.6903	8E-21		0.0282	[0.022-0.034] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1038	chr8	59392323	59392324	rs9297994	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q12.1	NR	rs9297994-G	NR	2E-23		0.045	unit increase	Affymetrix [at least 7091467] (imputed)	N
1038	chr8	59392323	59392324	rs9297994	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q12.1	NR	rs9297994-G	0.339	6E-20	(EA)	0.044	unit increase	Affymetrix [at least 7091467] (imputed)	N
1038	chr8	59392323	59392324	rs9297994	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q12.1	NR	rs9297994-G	NR	2E-20		0.043	unit increase	Affymetrix [at least 7091467] (imputed)	N
1038	chr8	59392323	59392324	rs9297994	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q12.1	NR	rs9297994-G	0.339	2E-17	(EA)	0.042	unit increase	Affymetrix [at least 7091467] (imputed)	N
1038	chr8	59392323	59392324	rs9297994	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	LDL cholesterol	up 62,166 European ancestry individuals	NA	8q12.1	CYP7A1	rs9297994-G	0.34	2E-11		0.042	[0.03-0.054] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
1038	chr8	59392736	59392737	rs10107182	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Total cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	8q12.1	UBXN2B, CYP7A1	rs10107182-?		2E-18		0.0374	[0.029-0.046] unit increase	Illumina [31500000] (imputed)	N
1038	chr8	59392736	59392737	rs10107182	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Low density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	8q12.1	UBXN2B, CYP7A1	rs10107182-?		4E-16		0.04	[0.03-0.05] unit increase	Illumina [31500000] (imputed)	N
1038	chr8	59392736	59392737	rs10107182	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	8q12.1	NR	rs10107182-T	0.6631659999999999	1E-27		0.0130067	[0.011-0.015] unit increase	Affymetrix [16582621] (imputed)	N
1038	chr8	59392736	59392737	rs10107182	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	8q12.1	NR	rs10107182-T	0.6631659999999999	3E-22		0.0124022	[0.0098-0.015] unit increase	Affymetrix [16582614] (imputed)	N
1038	chr8	59393272	59393273	rs4738684	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	8q12.1		rs4738684-G	NR	1E-36		0.0294	[0.025-0.034] unit decrease	Affymetrix, Illumina [20521447] (imputed)	N
1038	chr8	59393272	59393273	rs4738684	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cholecystitis	9,820 European ancestry cases, 461,431 European ancestry controls, 1,860 East Asian ancestry cases, 168,253 East Asian ancestry controls	NA	8q12.1		rs4738684-G	NR	7E-11		0.1024	[0.072-0.133] unit decrease	Affymetrix, Illumina [25842273] (imputed)	N
1038	chr8	59393272	59393273	rs4738684	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	417,580 European ancestry individuals	NA	8q12.1		rs4738684-A	0.334478	7E-9		0.012	[0.0081-0.0159] unit decrease	NR [7250403] (imputed)	N
1038	chr8	59393272	59393273	rs4738684	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	8q12.1	CYP7A1	rs4738684-A	0.335345	3E-46		0.0315438	[0.027-0.036] unit increase	Affymetrix [NR] (imputed)	N
1038	chr8	59393272	59393273	rs4738684	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	8q12.1	SDCBP	rs4738684-?	NR	2E-56		0.0428	[0.038-0.048] unit increase	Affymetrix [5701386] (imputed)	N
1038	chr8	59393272	59393273	rs4738684	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q12.1	NR	rs4738684-A	NR	2E-23		0.045	unit increase	Affymetrix [at least 7091467] (imputed)	N
1038	chr8	59393272	59393273	rs4738684	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q12.1	NR	rs4738684-A	0.341	4E-20	(EA)	0.045	unit increase	Affymetrix [at least 7091467] (imputed)	N
1038	chr8	59393272	59393273	rs4738684	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q12.1	NR	rs4738684-A	NR	1E-20		0.043	unit increase	Affymetrix [at least 7091467] (imputed)	N
1038	chr8	59393272	59393273	rs4738684	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q12.1	NR	rs4738684-A	0.341	9E-18	(EA)	0.043	unit increase	Affymetrix [at least 7091467] (imputed)	N
1038	chr8	59393272	59393273	rs4738684	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	Cholesterol, total	up to 62,166 European ancestry individuals	NA	8q12.1	CYP7A1	rs4738684-A	0.34	3E-11		0.041	[0.029-0.053] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
1038	chr8	59394968	59394969	rs10087499	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	8q12.1	NR	rs10087499-T	NR	1E-11		0.0185	[0.013-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
1038	chr8	59394968	59394969	rs10087499	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	8q12.1	NR	rs10087499-T	NR	5E-17		0.0227	[0.017-0.028] unit decrease	Affymetrix [9000000] (imputed)	N
1038	chr8	59394968	59394969	rs10087499	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	8q12.1	NR	rs10087499-T	NR	2E-13		0.0209	[0.015-0.026] unit increase	Affymetrix [9000000] (imputed)	N
1038	chr8	59394968	59394969	rs10087499	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	8q12.1	NR	rs10087499-T	NR	4E-16		0.0221	[0.017-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
1038	chr8	59394968	59394969	rs10087499	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	8q12.1	NR	rs10087499-T	NR	1E-12		0.0193	[0.014-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
1038	chr8	59394968	59394969	rs10087499	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	8q12.1	NR	rs10087499-T	NR	3E-17		0.0229	[0.018-0.028] unit decrease	Affymetrix [9000000] (imputed)	N
1038	chr8	59394968	59394969	rs10087499	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	8q12.1	NR	rs10087499-T	NR	1E-14		0.021	[0.016-0.026] unit increase	Affymetrix [9000000] (imputed)	N
1038	chr8	59394968	59394969	rs10087499	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	8q12.1	NR	rs10087499-T	NR	2E-12		0.0192	[0.014-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
1038	chr8	59396863	59396866	rs370610412	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	135,808 East Asian ancestry individuals	NA	8q12.1		rs370610412-A	0.276584	1E-18		0.0352896	[0.027-0.043] unit decrease	Illumina [13476599] (imputed)	N
1038	chr8	59396863	59396866	rs370610412	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	72,866 East Asian ancestry individuals	NA	8q12.1		rs370610412-A	0.27701	8E-9		0.0309108	[0.02-0.041] unit decrease	Illumina [13461863] (imputed)	N
1038	chr8	59398275	59398276	rs75214121	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Low density lipoprotein cholesterol levels	72,866 Japanese ancestry individuals	NA	8q12.1	UBXN2B, CYP7A1	rs75214121-?	NR	9E-9		0.03326	[0.022-0.045] unit decrease novel	Illumina [6108953] (imputed)	N
1038	chr8	59398460	59398461	rs10504255	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	VLDL cholesterol levels	115,082 European ancestry individuals	NA	8q12.1		rs10504255-G	0.337042	2E-11		0.029472	[0.021-0.038] unit increase	NR [11722792] (imputed)	N
1038	chr8	59398460	59398461	rs10504255	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium LDL	115,082 European ancestry individuals	NA	8q12.1		rs10504255-G	0.337042	2E-10		0.0271052	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
1038	chr8	59398460	59398461	rs10504255	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small LDL	115,082 European ancestry individuals	NA	8q12.1		rs10504255-G	0.337042	5E-9		0.0255669	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
1038	chr8	59398460	59398461	rs10504255	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium VLDL	115,082 European ancestry individuals	NA	8q12.1		rs10504255-G	0.337042	7E-12		0.0298029	[0.021-0.038] unit increase	NR [11722792] (imputed)	N
1038	chr8	59398460	59398461	rs10504255	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium LDL	115,082 European ancestry individuals	NA	8q12.1		rs10504255-G	0.337042	2E-8		0.0247022	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
1038	chr8	59398460	59398461	rs10504255	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large VLDL	115,082 European ancestry individuals	NA	8q12.1		rs10504255-G	0.337042	3E-10		0.0266898	[0.018-0.035] unit increase	NR [11722792] (imputed)	N
1038	chr8	59398460	59398461	rs10504255	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in VLDL	115,082 European ancestry individuals	NA	8q12.1		rs10504255-G	0.337042	1E-11		0.0290644	[0.021-0.037] unit increase	NR [11722792] (imputed)	N
1038	chr8	59398460	59398461	rs10504255	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in LDL	115,082 European ancestry individuals	NA	8q12.1		rs10504255-G	0.337042	3E-8		0.0242428	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
1038	chr8	59398460	59398461	rs10504255	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol minus HDL-C levels	115,082 European ancestry individuals	NA	8q12.1		rs10504255-G	0.337042	4E-9		0.0256524	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
1038	chr8	59398460	59398461	rs10504255	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Saturated fatty acid levels	115,006 European ancestry individuals	NA	8q12.1		rs10504255-G	0.337023	6E-11		0.0282853	[0.02-0.037] unit increase	NR [11722792] (imputed)	N
1038	chr8	59398460	59398461	rs10504255	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium VLDL	115,082 European ancestry individuals	NA	8q12.1		rs10504255-G	0.337042	2E-11		0.029345	[0.021-0.038] unit increase	NR [11722792] (imputed)	N
1038	chr8	59398460	59398461	rs10504255	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in VLDL	115,082 European ancestry individuals	NA	8q12.1		rs10504255-G	0.337042	6E-12		0.0296903	[0.021-0.038] unit increase	NR [11722792] (imputed)	N
1038	chr8	59398460	59398461	rs10504255	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	8q12.1		rs10504255-G	0.337042	3E-10		0.0265847	[0.018-0.035] unit increase	NR [11722792] (imputed)	N
1038	chr8	59398460	59398461	rs10504255	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in VLDL	115,082 European ancestry individuals	NA	8q12.1		rs10504255-G	0.337042	5E-12		0.0300281	[0.022-0.039] unit increase	NR [11722792] (imputed)	N
1038	chr8	59398460	59398461	rs10504255	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small LDL particles	115,082 European ancestry individuals	NA	8q12.1		rs10504255-G	0.337042	2E-11		0.0294435	[0.021-0.038] unit increase	NR [11722792] (imputed)	N
1038	chr8	59398460	59398461	rs10504255	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium VLDL particles	115,082 European ancestry individuals	NA	8q12.1		rs10504255-G	0.337042	2E-11		0.0294104	[0.021-0.038] unit increase	NR [11722792] (imputed)	N
1038	chr8	59398460	59398461	rs10504255	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium LDL particles	115,082 European ancestry individuals	NA	8q12.1		rs10504255-G	0.337042	1E-9		0.0267276	[0.018-0.035] unit increase	NR [11722792] (imputed)	N
1038	chr8	59398460	59398461	rs10504255	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large VLDL particles	115,082 European ancestry individuals	NA	8q12.1		rs10504255-G	0.337042	3E-10		0.0265781	[0.018-0.035] unit increase	NR [11722792] (imputed)	N
1038	chr8	59398460	59398461	rs10504255	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large LDL particles	115,082 European ancestry individuals	NA	8q12.1		rs10504255-G	0.337042	2E-8		0.0244054	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
1038	chr8	59398460	59398461	rs10504255	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of LDL particles	115,082 European ancestry individuals	NA	8q12.1		rs10504255-G	0.337042	2E-9		0.0263609	[0.018-0.035] unit increase	NR [11722792] (imputed)	N
1038	chr8	59398460	59398461	rs10504255	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large VLDL	115,082 European ancestry individuals	NA	8q12.1		rs10504255-G	0.337042	2E-11		0.0289557	[0.021-0.037] unit increase	NR [11722792] (imputed)	N
1038	chr8	59398460	59398461	rs10504255	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small LDL	115,082 European ancestry individuals	NA	8q12.1		rs10504255-G	0.337042	1E-9		0.0267601	[0.018-0.035] unit increase	NR [11722792] (imputed)	N
1038	chr8	59398460	59398461	rs10504255	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium LDL	115,082 European ancestry individuals	NA	8q12.1		rs10504255-G	0.337042	7E-9		0.0253745	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
1038	chr8	59398460	59398461	rs10504255	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large VLDL	115,082 European ancestry individuals	NA	8q12.1		rs10504255-G	0.337042	1E-10		0.0277478	[0.019-0.036] unit increase	NR [11722792] (imputed)	N
1038	chr8	59398460	59398461	rs10504255	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in LDL	115,082 European ancestry individuals	NA	8q12.1		rs10504255-G	0.337042	1E-8		0.0249227	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
1038	chr8	59398460	59398461	rs10504255	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	8q12.1		rs10504255-G	0.337042	4E-11		0.0282351	[0.02-0.037] unit increase	NR [11722792] (imputed)	N
1038	chr8	59398460	59398461	rs10504255	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small LDL	115,082 European ancestry individuals	NA	8q12.1		rs10504255-G	0.337042	2E-8		0.0246516	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
1038	chr8	59398460	59398461	rs10504255	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	8q12.1		rs10504255-G	0.337042	4E-8		0.0241787	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
1038	chr8	59398460	59398461	rs10504255	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	8q12.1		rs10504255-G	0.337042	1E-10		0.0274157	[0.019-0.036] unit increase	NR [11722792] (imputed)	N
1038	chr8	59398460	59398461	rs10504255	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein B levels	115,082 European ancestry individuals	NA	8q12.1		rs10504255-G	0.337042	1E-9		0.0267141	[0.018-0.035] unit increase	NR [11722792] (imputed)	N
1038	chr8	59398460	59398461	rs10504255	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls, 33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	8q12.1		rs10504255-A	NR	3E-11		0.0356	[0.025-0.046] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1038	chr8	59398460	59398461	rs10504255	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	8q12.1	NR	rs10504255-A	0.6623330000000001	3E-36		0.0112245	[0.0095-0.013] unit increase	Affymetrix [16582909] (imputed)	N
1038	chr8	59398460	59398461	rs10504255	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	8q12.1	NR	rs10504255-A	0.6623330000000001	4E-31		0.0114174	[0.0095-0.0134] unit increase	Affymetrix [16582965] (imputed)	N
1038	chr8	59398460	59398461	rs10504255	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	8q12.1	NR	rs10504255-G	0.336853	6E-10		0.0173977	[0.012-0.023] unit increase	Affymetrix [16585745] (imputed)	N
1038	chr8	59400339	59400340	rs10957057	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (unclassified genus belonging to family Erysipelotrichaceae)	541 Japanese ancestry women	NA	8q12.1	intergenic	rs10957057-T	0.20	2E-6		0.235	[0.14-0.33] unit increase	Illumina [545605]	N
1038	chr8	59402569	59402570	rs7018333	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in VLDL	115,082 European ancestry individuals	NA	8q12.1		rs7018333-A	0.328045	1E-9		0.0258918	[0.018-0.034] unit increase	NR [11722792] (imputed)	N
1038	chr8	59402569	59402570	rs7018333	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total triglycerides levels	115,082 European ancestry individuals	NA	8q12.1		rs7018333-A	0.328045	2E-10		0.0270191	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
1038	chr8	59402569	59402570	rs7018333	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large VLDL	115,082 European ancestry individuals	NA	8q12.1		rs7018333-A	0.328045	1E-9		0.0257451	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
1038	chr8	59402569	59402570	rs7018333	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large VLDL	115,082 European ancestry individuals	NA	8q12.1		rs7018333-A	0.328045	3E-10		0.02692	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
1038	chr8	59402569	59402570	rs7018333	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	8q12.1		rs7018333-A	0.328045	3E-10		0.0269545	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
1038	chr8	59402569	59402570	rs7018333	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large VLDL particles	115,082 European ancestry individuals	NA	8q12.1		rs7018333-A	0.328045	9E-10		0.0259503	[0.018-0.034] unit increase	NR [11722792] (imputed)	N
1038	chr8	59402569	59402570	rs7018333	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	8q12.1		rs7018333-A	0.328045	5E-10		0.0264954	[0.018-0.035] unit increase	NR [11722792] (imputed)	N
1038	chr8	59402569	59402570	rs7018333	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	8q12.1		rs7018333-A	0.328045	4E-9		0.0249409	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
1038	chr8	59406489	59406490	rs112784971	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	8q12.1		rs112784971-T	0.300321491	1E-9		0.06102635	[0.041-0.081] unit decrease	Illumina [13429980] (imputed)	N
1038	chr8	59406489	59406490	rs112784971	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cholelithiasis	9,305 East Asian ancestry cases, 168,253 East Asian ancestry controls	NA	8q12.1		rs112784971-T	0.301764092	9E-14		0.1263853	[0.093-0.16] unit decrease	Illumina [13429768] (imputed)	N
1038	chr8	59407807	59407808	rs28708563	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	8q12.1		rs28708563-A	NR	2E-8		0.0326	[0.021-0.044] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
1038	chr8	59415336	59415337	rs13277751	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large VLDL	115,082 European ancestry individuals	NA	8q12.1		rs13277751-T	0.357949	1E-8		0.0234384	[0.015-0.032] unit increase	NR [11722792] (imputed)	N
1038	chr8	59415336	59415337	rs13277751	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large VLDL	115,082 European ancestry individuals	NA	8q12.1		rs13277751-T	0.357949	8E-10		0.0256138	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
1038	chr8	59415336	59415337	rs13277751	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large VLDL	115,082 European ancestry individuals	NA	8q12.1		rs13277751-T	0.357949	8E-10		0.0256506	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
1038	chr8	59415336	59415337	rs13277751	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	8q12.1		rs13277751-G	NR	8E-9		0.0139	[0.0092-0.0186] unit decrease	Affymetrix, Illumina [20535842] (imputed)	N
1038	chr8	59440823	59440824	rs10108398	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	8q12.1	NR	rs10108398-G	0.27855399999999997	1E-8		0.0180668	[0.012-0.024] unit increase	Affymetrix [16580851] (imputed)	N
1038	chr8	59461787	59461788	rs7006794	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	8q12.1		rs7006794-C	NR	6E-10		0.0154	[0.011-0.02] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
1038	chr8	59463618	59463619	rs12680104	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q12.1	NR	rs12680104-C	0.311198	2E-16				Affymetrix, Illumina [23467995] (imputed)	N
1038	chr8	59464062	59464062	rs112557269	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	8q12.1		rs112557269-TG	NR	5E-14		0.0152	[0.011-0.019] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
1038	chr8	59464613	59464615	rs200096953	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	8q12.1	SDCBP	rs200096953-C	0.322878	3E-9		0.014151959	[0.0095-0.0188] unit increase	Affymetrix [93095623] (imputed)	N
1038	chr8	59465376	59465377	rs3808609	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	8q12.1	SDCBP	rs3808609-C	0.318536	1E-12		0.01695511	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1038	chr8	59465376	59465377	rs3808609	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	8q12.1	NR	rs3808609-C	0.318017	4E-17		0.016911	[0.013-0.021] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
1038	chr8	59466105	59466106	rs113895159	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	8q12.1	SDCBP	rs113895159-T	0.67	1E-11		6.8	z-score increase	Affymetrix [4314223] (imputed)	N
1038	chr8	59492463	59492464	rs147693472	34074324	Wan JY	2021-06-01	Diabetol Metab Syndr	Genome-wide association analysis of metabolic syndrome quantitative traits in the GENNID multiethnic family study.	Fasting insulin	281 African American individuals from 73 families, 516 European ancestry individuals from 75 families, 125 Japanese American individuals from 15 families, 598 Mexican American individuals from 96 families	NA	8q12.1	SDCBP	rs147693472-T	0.02	1E-6	(African American)	1.34	[0.81-1.87] unit decrease	Illumina [up to 13042663] (imputed)	N
1038	chr8	59496051	59496052	rs3739327	33539483	Li Z	2021-02-04	PLoS One	Bivariate genome-wide association study (GWAS) of body mass index and blood pressure phenotypes in northern Chinese twins.	Systolic blood pressure and diastolic blood pressure (bivariate analysis)	274 Chinese ancestry dizygotic twins	NA	8q12.1	NSMAF	rs3739327-?	NR	6E-6				Illumina [7401356] (imputed)	N
1038	chr8	59501136	59501137	rs200523234	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	8q12.1		rs200523234-C	NR	6E-9		0.0136	[0.0091-0.0181] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
1039	chr8	59508579	59508580	rs11994937	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	8q12.1	NR	rs11994937-C	0.978061912475822	5E-6	(IGP14)	0.5011	[0.29-0.72] unit decrease	Illumina [~ 2500000] (imputed)	N
1039	chr8	59509354	59509355	rs189309686	31624269	Terao C	2019-10-17	Nat Commun	GWAS of mosaic loss of chromosome Y highlights genetic effects on blood cell differentiation.	Mosaic loss of chromosome Y (Y chromosome dosage)	95,380 Japanese men	NA	8q12.1	NSMAF	rs189309686-T	0.25	4E-8		0.027	NR unit increase	Illumina [9591901] (imputed)	N
1039	chr8	59524536	59524537	rs2326129	33407418	Jonsson A	2021-01-06	BMC Med Genomics	Genome-wide association study of circulating levels of glucagon during an oral glucose tolerance test.	Glucagon levels in response to oral glucose tolerance test (120 minutes)	553 European ancestry individuals, 1,346 individuals	NA	8q12.1	NR	rs2326129-T	0.6451	1E-6		0.1705	[0.1-0.24] unit decrease	Illumina [NR] (imputed)	N
1039	chr8	59567884	59567885	rs16923637	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	8q12.1	NR	rs16923637-T	NR	8E-14		0.0198	[0.015-0.025] unit increase	Affymetrix [9000000] (imputed)	N
1039	chr8	59567884	59567885	rs16923637	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	8q12.1	NR	rs16923637-T	NR	1E-22		0.0259	[0.021-0.031] unit increase	Affymetrix [9000000] (imputed)	N
1039	chr8	59567884	59567885	rs16923637	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	8q12.1	NR	rs16923637-T	NR	1E-13		0.0207	[0.015-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
1039	chr8	59567884	59567885	rs16923637	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	8q12.1	NR	rs16923637-T	NR	3E-23		0.0263	[0.021-0.032] unit increase	Affymetrix [9000000] (imputed)	N
1039	chr8	59567884	59567885	rs16923637	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	8q12.1	NR	rs16923637-T	NR	1E-11		0.018	[0.013-0.023] unit increase	Affymetrix [9000000] (imputed)	N
1039	chr8	59567884	59567885	rs16923637	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	8q12.1	NR	rs16923637-T	NR	2E-9		0.016	[0.011-0.021] unit increase	Affymetrix [9000000] (imputed)	N
1039	chr8	59567884	59567885	rs16923637	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	8q12.1	NR	rs16923637-T	NR	4E-13		0.0192	[0.014-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
1039	chr8	59567884	59567885	rs16923637	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	8q12.1	NR	rs16923637-T	NR	2E-17		0.0225	[0.017-0.028] unit increase	Affymetrix [9000000] (imputed)	N
1039	chr8	59567884	59567885	rs16923637	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	8q12.1	NSMAF	rs16923637-T	0.285734	2E-9		0.014741799	[0.0099-0.0196] unit increase	Affymetrix [93095623] (imputed)	N
1039	chr8	59567884	59567885	rs16923637	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	8q12.1	NR	rs16923637-T	0.286039	5E-10		0.014168	[0.0097-0.0186] SD unit increase	Affymetrix, Illumina [50036608] (imputed)	N
1039	chr8	59601556	59601557	rs1387221	25656473	de With SA	2015-02-05	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of lymphoblast cell viability after clozapine exposure.	Clozapine-induced cytotoxicity	90 European ancestry lymphoblast cell lines	NA	8q12.1	intergenic	rs1387221-?	NR	8E-6	(AUC)			NR [2092490]	N
1040	chr8	59659123	59659124	rs72649409	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Caudal middle frontal gyrus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	8q12.1	NR	rs72649409-?		5E-6				Illumina [4322238] (imputed)	N
1040	chr8	59708308	59708309	rs960089	19734545	Need AC	2009-09-04	Hum Mol Genet	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA	8q12.1	TOX	rs960089-?	0.06545	6E-6	(PAL6)			Illumina [475971]	N
1040	chr8	59726630	59726631	rs80178684	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD64 on monocyte	3,622 Sardinian (founder/genetic isolate) ancestry individuals	NA	8q12.1		rs80178684-G	0.01096	4E-8		0.6492	[0.42-0.88] unit decrease	Illumina [18215199] (imputed)	N
1040	chr8	59726630	59726631	rs80178684	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD64 on CD14+ CD16- monocyte	3,622 Sardinian (founder/genetic isolate) ancestry individuals	NA	8q12.1		rs80178684-G	0.01096	4E-8		0.6409	[0.41-0.87] unit decrease	Illumina [18215199] (imputed)	N
1040	chr8	59742638	59742639	rs826732	31826910	Lu Y	2019-12-11	Cancer Epidemiol Biomarkers Prev	Identification of novel loci and new risk variant in known loci for colorectal cancer risk in East Asians.	Colorectal cancer	23,572 East Asian ancestry cases, 48,700 East Asian ancestry controls	58,131 European ancestry cases, 67,347 European ancestry controls	8q12.1		rs826732-C	NR	2E-6		1.04	[1.02-1.05]	Affymetrix, Illumina [up to 47000000] (imputed)	N
1040	chr8	59742638	59742639	rs826732	31826910	Lu Y	2019-12-11	Cancer Epidemiol Biomarkers Prev	Identification of novel loci and new risk variant in known loci for colorectal cancer risk in East Asians.	Colorectal cancer	23,572 East Asian ancestry cases, 48,700 East Asian ancestry controls	58,131 European ancestry cases, 67,347 European ancestry controls	8q12.1		rs826732-C	0.583	4E-6	(East Asian)	1.07	[1.04-1.10]	Affymetrix, Illumina [up to 47000000] (imputed)	N
1041	chr8	59784042	59784043	rs2726554	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	8q12.1		rs2726554-?	NR	1E-14				NR [~ 8900000] (imputed)	N
1041	chr8	59784203	59784204	rs73249047	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (PANSS score)	1,390 European ancestry individuals	NA	8q12.1		rs73249047-?	NR	8E-6	(MLM)	0.4501463	[0.25-0.65] unit increase	Illumina [~ 9000000] (imputed)	N
1041	chr8	59799780	59799781	rs4737525	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	8q12.1	TOX	rs4737525-A	0.5113	4E-11		0.01328229	[0.0093-0.0172] unit decrease	Affymetrix [11514654] (imputed)	N
1041	chr8	59800445	59800446	rs10109566	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	8q12.1	TOX	rs10109566-G	0.5151	9E-9		1.0224482		Affymetrix [11880941] (imputed)	N
1041	chr8	59802661	59802662	rs10092649	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	8q12.1		rs10092649-C	0.587	9E-14		0.009	[0.007-0.011] unit increase	NR [NR] (imputed)	N
1041	chr8	59803718	59803719	rs7845800	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (mother's age at death or mother's attained age)	up to 699,000 individuals	NA	8q12.1	NR	rs7845800-A		1E-6				Illumina [458525]	N
1041	chr8	59803835	59803836	rs7829715	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking initiation	842,717 European ancestry individuals	NA	8q12.1	TOX	rs7829715-T		6E-13		1.025	[NR]	Affymetrix [up to 79000000] (imputed)	N
1041	chr8	59805737	59805738	rs6471757	34330890	Ip HF	2021-07-30	Transl Psychiatry	Genetic association study of childhood aggression across raters, instruments, and age.	Childhood aggressive behavior	87,485 European ancestry individuals	NA	8q12.1		rs6471757-A	0.596849997	3E-6		0.011889561	[0.0069-0.0169] unit decrease	Affymetrix, Illumina [up to 7284995] (imputed)	N
1041	chr8	59811723	59811724	rs13268621	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	8q12.1	TOX	rs13268621-T	0.4948	2E-14		0.019714508	[0.015-0.025] unit increase	Affymetrix [~ 11515000] (imputed)	N
1041	chr8	59814665	59814666	rs13261666	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	8q12.1	NR	rs13261666-T	0.517	1E-20		0.0100525	[0.0079-0.0122] unit decrease	NR [9732723] (imputed)	N
1041	chr8	59814665	59814666	rs13261666	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	8q12.1	NR	rs13261666-T	0.517	4E-15		0.019994581	[0.015-0.025] unit decrease	NR [~ 10000000] (imputed)	N
1041	chr8	59815327	59815328	rs17231390	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	8q12.1	NR	rs17231390-G	0.392	5E-11		0.00980839	[0.0069-0.0127] unit increase	NR [9732723] (imputed)	N
1041	chr8	59816867	59816868	rs55871839	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Pork consumption	335,576 European ancestry individuals	NA	8q12.1	TOX	rs55871839-?	NR	5E-8		0.00241062	[-0.00251-0.00733] unit decrease	Affymetrix [25921788] (imputed)	N
1041	chr8	59816867	59816868	rs55871839	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Oily fish consumption	335,576 European ancestry individuals	NA	8q12.1	TOX	rs55871839-?	NR	5E-8		0.0136208	[0.0087-0.0185] unit decrease	Affymetrix [25921788] (imputed)	N
1041	chr8	59816867	59816868	rs55871839	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	8q12.1	NR	rs55871839-?	NR	6E-6		0.0409	[0.023-0.059] unit decrease	Illumina [at least 560000] (imputed)	N
1041	chr8	59817067	59817068	rs1562612	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking initiation (ever regular vs never regular)	up to 433,216 European ancestry individuals	NA	8q12.1	TOX	rs1562612-G	0.504	1E-9		0.0139	[0.0094-0.0184] unit decrease	Illumina [~ 250000] (imputed)	N
1041	chr8	59817067	59817068	rs1562612	30617275	Erzurumluoglu AM	2019-01-07	Mol Psychiatry	Meta-analysis of up to 622,409 individuals identifies 40 novel smoking behaviour associated genetic loci.	Smoking initiation	324,851 European ancestry individuals, 21,962 South Asian ancestry individuals	up to 275,596 European ancestry individuals	8q12.1	TOX	rs1562612-G	0.35	1E-9		0.0112	[0.0053-0.0171] unit decrease (replication)	Affymetrix, Illumina [up to 1207583] (imputed)	N
1041	chr8	59817453	59817454	rs12114218	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	8q12.1		rs12114218-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1041	chr8	59823934	59823935	rs11782466	31081985	Stein MB	2019-05-13	Am J Med Genet B Neuropsychiatr Genet	Genome-wide analyses of psychological resilience in U.S. Army soldiers.	Psychological resilience (outcome-based)	1,558 European ancestry resilient cases, 381 European ancestry controls with post-deployment mental disorder	NA	8q12.1	TOX	rs11782466-T	0.0736	6E-7		1.9837332		Illumina [at least 664457] (imputed)	N
1041	chr8	59838132	59838133	rs13262617	29227965	Pilling LC	2017-12-01	Aging (Albany NY)	Human longevity: 25 genetic loci associated in 389,166 UK biobank participants.	Parental longevity (father's attained age)	415,311 British ancestry individuals	NA	8q12.1	TOX	rs13262617-A	0.97	3E-8		0.036	[0.023-0.049] unit increase	Affymetrix [11535925] (imputed)	N
1041	chr8	59872176	59872177	rs1947178	34012112	Chiou J	2021-05-19	Nature	Interpreting type 1 diabetes risk with genetics and single-cell epigenomics.	Type 1 diabetes	18,942 European ancestry cases, 501,638 European ancestry controls	NA	8q12.1	TOX	rs1947178-G	0.791944	2E-9		0.10326733	[0.07-0.137] unit decrease	Affymetrix, Illumina [62116689] (imputed)	N
1041	chr8	59897222	59897223	rs111937104	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Alcohol consumption x experiences in childhood (felt loved by family member) interaction	41,648 European ancestry individuals	NA	8q12.1		rs111937104-?	NR	5E-8		0.7293	[0.47-0.99] unit decrease	Affymetrix [NR] (imputed)	N
1041	chr8	59898059	59898060	rs7833731	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Superior temporal sulcus banks volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	8q12.1	TOX	rs7833731-?		9E-6				Illumina [4322238] (imputed)	N
1041	chr8	59898262	59898263	rs1868346	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	8q12.1	NR	rs1868346-?	NR	3E-12				Affymetrix [NR]	N
1042	chr8	59924789	59924790	rs16924419	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Alcohol consumption x experiences in childhood (felt loved by family member) interaction	41,648 European ancestry individuals	NA	8q12.1		rs16924419-?	NR	2E-8		0.749	[0.49-1.01] unit decrease	Affymetrix [NR] (imputed)	N
1042	chr8	59934165	59934166	rs10957077	34624637	Zainul Abidin FN	2021-09-21	Neuroimage Clin	Glucose hypometabolism in the Auditory Pathway in Age Related Hearing Loss in the ADNI cohort.	Age related hearing loss-related regional glucose metabolism (Inferior colliculus)	228 European ancestry cases, 587 European ancestry controls	NA	8q12.1		rs10957077-?	NR	2E-6		0.247	[0.15-0.35] unit decrease	Illumina [5082878] (imputed)	N
1042	chr8	59935441	59935442	rs113654	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	8q12.1	NR	rs113654-?	NR	3E-25				Affymetrix [NR]	N
1042	chr8	59974174	59974175	rs16924527	27416945	Walford GA	2016-07-14	Diabetes	Genome-Wide Association Study of the Modified Stumvoll Insulin Sensitivity Index Identifies BCL2 and FAM19A2 as Novel Insulin Sensitivity Loci.	Modified Stumvoll Insulin Sensitivity Index (BMI interaction)	16,753 European ancestry individuals	13,354 European ancestry individuals	8q12.1	TOX	rs16924527-A	0.02	4E-6		0.007825	[-0.00229-0.01794] unit increase	Affymetrix, Illumina [up to 2400000] (imputed)	N
1043	chr8	60078733	60078734	rs7823467	25367360	Li Q	2014-11-04	Hum Genet	Genome-wide association study for refractive astigmatism reveals genetic co-determination with spherical equivalent refractive error: the CREAM consortium.	Refractive astigmatism	8,487 European ancestry cases aged 25 years or older, 23,481 European ancestry controls aged 25 years or older, 907 European ancestry cases aged less than 25 years, 4,733 European ancestry controls aged less than 25 years, 3,076 Asian ancestry cases aged 25 years or older, 6,219 Asian ancestry controls aged 25 years or older, 247 Chinese ancestry cases aged less than 25 years, 670 Chinese ancestry controls aged less than 25 years	NA	8q12.1	TOX	rs7823467-T	0.388	3E-7		1.085	[1.052-1.120]	Affymetrix, Illumina [NR] (imputed)	N
1043	chr8	60109566	60109567	rs58726170	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	8q12.1	Intergenic	rs58726170-?		7E-6		2.01	[1.48-2.72]	Illumina [7645193] (imputed)	N
1043	chr8	60130295	60130296	rs3110127	20031603	Marroni F	2009-08-01	Circ Cardiovasc Genet	A genome-wide association scan of RR and QT interval duration in 3 European genetically isolated populations: the EUROSPAN project.	RR interval (heart rate)	2,325 European ancestry individuals	NA	8q12.1	intergenic	rs3110127-A	0.33	4E-6		0.15	[0.09-0.21] unit decrease	Illumina [~ 318327]	N
1043	chr8	60132193	60132194	rs10113215	25233373	Simpson CL	2014-09-18	PLoS One	Genome-wide meta-analysis of myopia and hyperopia provides evidence for replication of 11 loci.	Myopia	3,923 European ancestry cases, 11,696 European ancestry controls	1,410 European ancestry cases, 2,921 cases, 3,171 European ancestry controls, 998 controls	8q12.1	TOX	rs10113215-?		1E-8				Affymetrix, Illumina [up to 3397980] (imputed)	N
1043	chr8	60145052	60145053	rs4317556	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent	41,073 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	8q12.1	NR	rs4317556-A	0.5912	9E-13	(EA)	0.1063	[0.077-0.136] unit decrease	Affymetrix, Illumina [~ 9300000] (imputed)	N
1044	chr8	60176328	60176329	rs11777176	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia	11,197 European ancestry low myopic cases, 21,416 European ancestry emmetropia controls	NA	8q12.1	NR	rs11777176-?	NR	1E-10		0.10936	[0.076-0.143] unit decrease	NR [13958389] (imputed)	N
1044	chr8	60178579	60178580	rs72621438	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	8q12.1		rs72621438-G	0.35035	7E-6		0.031928	[0.018-0.046] unit increase	Affymetrix [15580782] (imputed)	N
1044	chr8	60178579	60178580	rs72621438	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	8q12.1	SNORA51, CA8	rs72621438-?	NR	2E-8		0.16265	[0.11-0.22] unit decrease	NR [13958389] (imputed)	N
1044	chr8	60178579	60178580	rs72621438	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	8q12.1	NR	rs72621438-G		6E-50		0.17	[0.15-0.19] unit increase	NR [NR]	N
1044	chr8	60178579	60178580	rs72621438	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	8q12.1	TOX, CA8, CHD7	rs72621438-?		1E-153				Affymetrix, Illumina [NR] (imputed)	N
1044	chr8	60178579	60178580	rs72621438	31816047	Boutin TS	2019-12-09	Hum Mol Genet	Insights into the genetic basis of retinal detachment.	High myopia	2,737 British ancestry cases, 47,635 British ancestry controls	NA	8q12.1	TOX	rs72621438-C	0.642	2E-8		1.175917	[1.111137-1.244475]	Affymetrix [NR] (imputed)	N
1044	chr8	60178579	60178580	rs72621438	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	8q12.1	SNORA51, CA8	rs72621438-C	0.6415	2E-39		13.137	[NR] z score decrease	Affymetrix, Illumina [~ 11000000] (imputed)	N
1044	chr8	60178579	60178580	rs72621438	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Myopia (age of diagnosis)	104,293 European ancestry individuals	NA	8q12.1	NR	rs72621438-C	0.6443	2E-30		0.0851	[0.071-0.1] unit decrease	Illumina [~ 10600000] (imputed)	N
1044	chr8	60178720	60178721	rs10089517	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent	41,073 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	8q12.1	NR	rs10089517-A	0.3615	1E-13		0.1033	[0.076-0.131] unit increase	Affymetrix, Illumina [~ 9300000] (imputed)	N
1044	chr8	60178720	60178721	rs10089517	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Myopia	106,086 European ancestry cases, 85,757 European ancestry controls	NA	8q12.1	TOX, CA8	rs10089517-?	NR	6E-41		1.107	[1.091-1.124]	Illumina [13762925] (imputed)	N
1044	chr8	60178720	60178721	rs10089517	27020472	Fan Q	2016-03-29	Nat Commun	Meta-analysis of gene-environment-wide association scans accounting for education level identifies additional loci for refractive error.	Spherical equivalent (joint analysis main effects and education interaction)	2,604 Erasmus Rucphen population isolate individuals, 456 Sardinian population isolate individuals, 36,976 European ancestry individuals, 5,971 East Asian ancestry individuals, 2,256 Malay ancestry individuals, 2,088 Indian ancestry individuals	NA	8q12.1	TOX	rs10089517-A	0.36	8E-18				Affymetrix, Illumina [up to 7331415] (imputed)	N
1044	chr8	60178720	60178721	rs10089517	27020472	Fan Q	2016-03-29	Nat Commun	Meta-analysis of gene-environment-wide association scans accounting for education level identifies additional loci for refractive error.	Spherical equivalent (joint analysis main effects and education interaction)	2,604 Erasmus Rucphen population isolate individuals, 456 Sardinian population isolate individuals, 36,976 European ancestry individuals, 5,971 East Asian ancestry individuals, 2,256 Malay ancestry individuals, 2,088 Indian ancestry individuals	NA	8q12.1	TOX	rs10089517-A	0.35	1E-14	(European ancestry)			Affymetrix, Illumina [up to 7331415] (imputed)	N
1044	chr8	60178720	60178721	rs10089517	25233373	Simpson CL	2014-09-18	PLoS One	Genome-wide meta-analysis of myopia and hyperopia provides evidence for replication of 11 loci.	Hyperopia	7,068 European ancestry cases, 6,844 European ancestry controls	1,554 European ancestry cases, 892 cases, 1,654 European ancestry controls, 2,921 controls	8q12.1	TOX	rs10089517-?		2E-11				Affymetrix, Illumina [up to 3397980] (imputed)	N
1044	chr8	60178720	60178721	rs10089517	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue/subcutaneous adipose tissue ratio	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	8q12.1	TOX	rs10089517-C	0.71	2E-6	(overall)			Affymetrix, Illumina [2500000] (imputed)	N
1044	chr8	60179085	60179086	rs7837791	23396134	Verhoeven VJ	2013-02-10	Nat Genet	Genome-wide meta-analyses of multiancestry cohorts identify multiple new susceptibility loci for refractive error and myopia.	Refractive error	37,382 European ancestry individuals, 3,995 Chinese ancestry individuals, 2,273 Malay ancestry individuals, 2,108 Indian ancestry individuals	NA	8q12.1	CHD7, TOX	rs7837791-T	0.49	4E-12		0.106	[0.077-0.135] unit increase	Affymetrix, Illumina [2500000] (imputed)	N
1044	chr8	60187790	60187791	rs75661265	28468790	Agopian AJ	2017-06-01	Circ Cardiovasc Genet	Genome-Wide Association Studies and Meta-Analyses for Congenital Heart Defects.	Congenital heart disease (maternal effect)	1,119 European ancestry trios	NA	8q12.1	intergenic	rs75661265-?	NR	5E-7		1.176603	[1.104347-1.253586]	Illumina [at least 4756722] (imputed)	N
1044	chr8	60192813	60192814	rs55884872	28468790	Agopian AJ	2017-06-01	Circ Cardiovasc Genet	Genome-Wide Association Studies and Meta-Analyses for Congenital Heart Defects.	Conotruncal heart defects (maternal effects)	up to 838 European ancestry trios	NA	8q12.1	intergenic	rs55884872-?	NR	2E-7		1.198676	[1.120066-1.282803]	Illumina [at least 4756722] (imputed)	N
1044	chr8	60195007	60195008	rs6989377	33547071	Bonfante B	2021-02-05	Sci Adv	A GWAS in Latin Americans identifies novel face shape loci, implicating VPS13B and a Denisovan introgressed region in facial variation.	Facial morphology (philtrum length)	6,169 Latin American individuals	NA	8q12.1		rs6989377-?	NR	4E-8				Illumina [8703729] (imputed)	N
1044	chr8	60264464	60264465	rs62506196	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	8q12.1	NA	rs62506196-A	0.8376	3E-9		0.0159	[0.011-0.021] unit decrease	NR [~ 27400000] (imputed)	N
1044	chr8	60280142	60280143	rs6993988	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	8q12.1	NR	rs6993988-?	NR	7E-6		4.484	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1045	chr8	60317254	60317255	rs759886106	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	8q12.1	RNA5SP267	rs759886106-A	0.9973	6E-6		1.5045	[0.85-2.16] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1046	chr8	60535823	60535824	rs6996733	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	8q12.1	TOX	rs6996733-T	0.8458	3E-8		0.1882	[0.12-0.26] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1046	chr8	60545663	60545664	rs4737547	23502783	Weinhold N	2013-03-17	Nat Genet	The CCND1 c.870G>A polymorphism is a risk factor for t(11;14)(q13;q32) multiple myeloma.	Multiple myeloma (IgH translocation)	up to 1,660 European ancestry cases, 7,306 European ancestry controls		8q12.1	NR	rs4737547-G	0.42	3E-6	(Any IgH translocation vs. controls)	1.3	[1.17-1.45]	Illumina [414804] (imputed)	N
1046	chr8	60551654	60551655	rs4342576	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	8q12.1		rs4342576-T	0.43	7E-9		5.8	z score increase	Affymetrix [9061022] (imputed)	N
1046	chr8	60551654	60551655	rs4342576	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	8q12.1	NR	rs4342576-T	0.4263	3E-8				NR [9056863] (imputed)	N
1047	chr8	60556508	60556509	rs72655575	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	8q12.1	SNORA51, CA8	rs72655575-A	0.2013	7E-12		6.867	[NR] z score increase	Affymetrix, Illumina [~ 11000000] (imputed)	N
1047	chr8	60558586	60558587	rs188321191	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	8q12.1	NR	rs188321191-?	NR	1E-5		0.72418	[0.4-1.04] unit decrease	NR [13958389] (imputed)	N
1047	chr8	60561808	60561809	rs62504693	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	8q12.1		rs62504693-?	NR	9E-22				NR [~ 8900000] (imputed)	N
1047	chr8	60565104	60565105	rs5008399	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	8q12.1	NR	rs5008399-G		2E-8		0.08	[0.06-0.1] unit increase	NR [NR]	N
1047	chr8	60580016	60580017	rs28709348	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Inferior temporal gyrus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	8q12.1	NR	rs28709348-?		8E-6				Illumina [4322238] (imputed)	N
1047	chr8	60581489	60581490	rs78521489	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	8q12.1		rs78521489-C	NR	2E-9		0.018	[0.012-0.024] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
1047	chr8	60581489	60581490	rs78521489	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q12.1	NR	rs78521489-C	0.168617	2E-12				Affymetrix, Illumina [24649327] (imputed)	N
1047	chr8	60581489	60581490	rs78521489	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q12.1	NR	rs78521489-C	0.185236	1E-11				Affymetrix, Illumina [23114412] (imputed)	N
1047	chr8	60599328	60599329	rs35484123	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	8q12.1		rs35484123-G	NR	2E-23		0.0162	[0.013-0.019] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1047	chr8	60599328	60599329	rs35484123	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	8q12.1		rs35484123-G	0.375062	2E-10		0.0133765	[0.0092-0.0175] unit increase	Illumina [13479295] (imputed)	N
1047	chr8	60599328	60599329	rs35484123	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	8q12.1	TOX, CA8	rs35484123-?	NR	2E-9		0.017932126	[0.012-0.024] unit increase	Illumina [27896057] (imputed)	N
1047	chr8	60599330	60599331	rs60461555	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental longevity (mother's age at death)	52,776 middle-aged British individuals	NA	8q12.1	NR	rs60461555-?	NR	6E-6		0.02598	[0.015-0.037] unit decrease	Affymetrix [9658292] (imputed)	N
1047	chr8	60623347	60623348	rs12541902	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	8q12.1	CA8	rs12541902-A	0.154	9E-6	(Urinary free dopamine: creatinine)	0.03	[NR] unit increase	Illumina [899892]	N
1048	chr8	60691206	60691207	rs10110581	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (early vs. average onset facial hair)	13,226 European ancestry early onset individuals, 161,175 European ancestry average onset individuals	NA	8q12.1		rs10110581-G	NR	1E-6		0.00476398	[0.0028-0.0067] years decrease	NR [7400000] (imputed)	N
1048	chr8	60691206	60691207	rs10110581	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (age at voice breaking MTAG)	205,354 European ancestry individuals	NA	8q12.1		rs10110581-G	NR	2E-11		0.024632804	[0.017-0.032] years increase	NR [7400000] (imputed)	N
1048	chr8	60694646	60694647	rs867743	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	8q12.1	NR	rs867743-?	NR	2E-9		1.0536964	[1.04-1.07]	Affymetrix, Illumina [12447948] (imputed)	N
1048	chr8	60694646	60694647	rs867743	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	8q12.1	CA8	rs867743-G	NR	2E-9		1.0615711	[1.04-1.08]	Illumina [6627481] (imputed)	N
1048	chr8	60694646	60694647	rs867743	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	8q12.1	CA8	rs867743-G	NR	5E-9		1.0582011	[1.04-1.08]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1048	chr8	60696525	60696526	rs1473594	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs anorexia nervosa (ordinary least squares (OLS))	40,675 schizophrenia cases, 16,992 anorexia nervosa cases	NA	8q12.1		rs1473594-?	NR	2E-8		0.0186	NR unit decrease	NR [4425810] (imputed)	N
1048	chr8	60696525	60696526	rs1473594	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs ADHD (ordinary least squares (OLS))	40,675 schizophrenia cases, 19,099 ADHD cases	NA	8q12.1		rs1473594-?	NR	1E-8		0.0195	NR unit decrease	NR [4428082] (imputed)	N
1048	chr8	60696525	60696526	rs1473594	29483656	Pardinas AF	2018-02-26	Nat Genet	Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.	Schizophrenia	40,675 European ancestry cases, 64,643 European ancestry controls	1,651 European ancestry cases, 4,111 cases, 142,717 European ancestry controls, 11,507 controls	8q12.1	CA8	rs1473594-?	NR	3E-11		1.066	[1.05-1.08]	Illumina [8000000] (imputed)	N
1048	chr8	60697873	60697874	rs6471814	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	8q12.1	Intergenic	rs6471814-?		2E-8				NR [6786993] (imputed)	N
1048	chr8	60700468	60700469	rs6984242	31268507	Periyasamy S	2019-07-03	JAMA Psychiatry	Association of Schizophrenia Risk With Disordered Niacin Metabolism in an Indian Genome-wide Association Study.	Schizophrenia	816 Indian ancestry cases, 900 Indian ancestry controls, 505 Indian ancestry cases and 871 Indian ancestry controls from 405 families, up to 36,989 European and unknown ancestry cases, up to 113,075 European and unknown ancestry controls	NA	8q12.1	NR	rs6984242-?	NR	1E-9				Illumina [up to 5582932] (imputed)	N
1048	chr8	60700468	60700469	rs6984242	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	8q12.1	NR	rs6984242-G	NR	7E-10		1.0638298	[NR]	Illumina [7158791] (imputed)	N
1048	chr8	60700468	60700469	rs6984242	25056061	Ripke S	2014-07-22	Nature	Biological insights from 108 schizophrenia-associated genetic loci.	Schizophrenia	32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	1,513 European ancestry cases, 66,236 European ancestry controls	8q12.1	CA8	rs6984242-G	0.4	6E-9		1.0626993	[1.04-1.08]	Affymetrix, Illumina [9005918] (imputed)	N
1048	chr8	60701800	60701801	rs13261481	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	8q12.1	CA8	rs13261481-T	NR	2E-8	(EA)	1.0638298	[1.04-1.09]	Illumina [6627481] (imputed)	N
1048	chr8	60718580	60718581	rs7817184	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 205)	19,670 European ancestry individuals	NA	8q12.1		rs7817184-?	NR	2E-8				NR [9705931] (imputed)	N
1048	chr8	60721510	60721511	rs6471834	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	8q12.1		rs6471834-A	0.33	1E-9		6.05	z score increase	Affymetrix [9061022] (imputed)	N
1049	chr8	60828696	60828697	rs17342242	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	8q12.1	NR	rs17342242-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1049	chr8	60828696	60828697	rs17342242	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	8q12.1		rs17342242-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1049	chr8	60847656	60847657	rs4257994	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	8q12.1		rs4257994-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1049	chr8	60858295	60858295	rs35940744	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	8q12.1		rs35940744-AG	NR	2E-10		0.0154	[0.011-0.02] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1049	chr8	60905671	60905672	rs182433975	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Rubella	12,000 European ancestry cases, 71,597 European ancestry controls	NA	8q12.1	NR	rs182433975-?	NR	2E-6		0.8038	[0.45-1.16] unit increase	Illumina [at least 560000] (imputed)	N
1049	chr8	60906880	60906881	rs473837	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		8q12.1	CA8	rs473837-G	0.64772	2E-9		0.00863143	[0.0058-0.0114] unit increase	Affymetrix [12370749]	N
1049	chr8	60914782	60914783	rs671985	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	8q12.1	NR	rs671985-G	0.5484	3E-10		1.0384216	[1.03-1.05]	Affymetrix, Illumina [NR] (imputed)	N
1049	chr8	60914782	60914783	rs671985	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	8q12.1	NA	rs671985-G	0.5369	2E-8	(Female)	1.0427529	[1.03-1.06]	Affymetrix, Illumina [NR] (imputed)	N
1050	chr8	60961820	60961821	rs569688	23049088	Meng W	2012-10-09	Invest Ophthalmol Vis Sci	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		8q12.1	intergenic	rs569688-?	0.197	4E-7			[NR]	Affymetrix, Illumina [152234]	N
1050	chr8	61003896	61003897	rs6995588	21348951	Parsa A	2011-02-01	Clin Transl Sci	Hypertrophy-associated polymorphisms ascertained in a founder cohort applied to heart failure risk and mortality.	Cardiac hypertrophy	851 Old Order Amish individuals	NA	8q12.1	CA8	rs6995588-?	NR	2E-6	(additive,  dominant)			Affymetrix [361034]	N
1051	chr8	61105198	61105199	rs10098647	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	8q12.1	CA8	rs10098647-G	0.3	5E-6	(Urinary free dopamine )	0.03	[NR] nmol/d increase	Illumina [899892]	N
1051	chr8	61163894	61163895	rs144074972	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Parkinson's disease	9,619 European ancestry cases, 324,522 European ancestry controls	NA	8q12.1	CA8	rs144074972-?	NR	6E-8				Illumina [12438219] (imputed)	N
1051	chr8	61168607	61168607	rs11399469	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	8q12.1		rs11399469-AC	NR	2E-11		0.0124	[0.0089-0.0159] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
1051	chr8	61175880	61175881	rs11345369	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	8q12.1		rs11345369-T	NR	2E-10		0.0122	[0.0085-0.0159] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
1051	chr8	61175880	61175881	rs11345369	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	8q12.1	CA8	rs11345369-T	0.42456	1E-10		0.014519756	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
1051	chr8	61178573	61178574	rs7464181	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	8q12.1		rs7464181-?	NR	4E-12				NR [~ 8900000] (imputed)	N
1051	chr8	61184948	61184948	rs34254518	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	8q12.1	CA8	rs34254518-CA	0.311772	7E-11		0.015929293	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1051	chr8	61184948	61184948	rs34254518	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	8q12.1	NR	rs34254518-I	0.311375	8E-13		0.01599	[0.012-0.02] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
1051	chr8	61194169	61194170	rs10957125	22952603	Hart AB	2012-08-28	PLoS One	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 10 individuals	NA	8q12.1	CA8	rs10957125-?	NR	4E-6	(SF7)			Affymetrix [5476100] (imputed)	N
1051	chr8	61195052	61195053	rs7009482	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CA8	5,366 Icelandic ancestry individuals	NA	8q12.1		rs7009482-A	0.4156	2E-25		0.198837	[0.16-0.24] unit increase	Illumina [7506463] (imputed)	N
1051	chr8	61195052	61195053	rs7009482	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	8q12.1	CA8	rs7009482-G	0.58921875	6E-14	(CA8, 11390_24_3)	0.1875168	[0.14-0.24] unit decrease	Illumina [> 1000000] (imputed)	N
1051	chr8	61210115	61210116	rs1824999	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Varicose veins	22,037 European ancestry cases, 437,665 European ancestry controls, 474 East Asian ancestry cases, 178,252 East Asian ancestry controls	NA	8q12.1		rs1824999-T	NR	2E-8		0.0592	[0.038-0.08] unit increase	Affymetrix, Illumina [25842955] (imputed)	N
1052	chr8	61212178	61212179	rs67583169	30367059	Teumer A	2018-10-26	Nat Commun	Genome-wide analyses identify a role for SLC17A4 and AADAT in thyroid hormone regulation.	Free thyroxine concentration	49,269 European ancestry individuals	up to 22,383 European ancestry individuals	8q12.1	CA8	rs67583169-C	0.87	7E-12		0.062	[0.044-0.08] unit increase	Affymetrix, Illumina [8048941] (imputed)	N
1052	chr8	61213805	61213806	rs1480335	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	8q12.1		rs1480335-G	NR	9E-9		0.0105	[0.007-0.014] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
1052	chr8	61306755	61306756	rs60405594	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	8q12.1	RP11-163N6.2	rs60405594-A	0.370144	7E-25		0.024366196	[0.02-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1052	chr8	61307546	61307547	rs11776939	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	8q12.1		rs11776939-C	0.624	6E-9				Affymetrix [10369434] (imputed)	N
1052	chr8	61326248	61326249	rs148651607	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	8q12.1		rs148651607-C	0.0138	1E-5		1.945		NR [11110260] (imputed)	N
1052	chr8	61327436	61327437	rs796469291	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	8q12.1	RP11-163N6.2	rs796469291-C	0.38413	1E-11		0.01592695	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1053	chr8	61346196	61346197	rs9650199	22952603	Hart AB	2012-08-28	PLoS One	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 10 individuals	NA	8q12.1	intergenic	rs9650199-?	NR	6E-6	(SF3)			Affymetrix [5476100] (imputed)	N
1053	chr8	61360265	61360266	rs11776511	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	8q12.1	NR	rs11776511-G	NR	2E-9		0.019	[0.013-0.025] unit increase	Affymetrix [9000000] (imputed)	N
1053	chr8	61360265	61360266	rs11776511	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	8q12.1	NR	rs11776511-G	NR	6E-12		0.0227	[0.016-0.029] unit increase	Affymetrix [9000000] (imputed)	N
1053	chr8	61360265	61360266	rs11776511	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	8q12.1	NR	rs11776511-G	NR	2E-10		0.02	[0.014-0.026] unit increase	Affymetrix [9000000] (imputed)	N
1053	chr8	61360265	61360266	rs11776511	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q12.1	NR	rs11776511-G	0.154216	4E-14				Affymetrix, Illumina [23472807] (imputed)	N
1053	chr8	61384752	61384753	rs60991551	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	8q12.1	RAB2A	rs60991551-A	0.1866	6E-8		0.0024	[0.0016-0.0032] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
1053	chr8	61386532	61386533	rs7839516	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	8q12.1	NR	rs7839516-C	0.369365	3E-15		0.015461	[0.012-0.019] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1053	chr8	61392723	61392724	rs7824937	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	8q12.1	RP11-163N6.2	rs7824937-G	0.366687	4E-14		0.017391764	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1053	chr8	61392723	61392724	rs7824937	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q12.1	NR	rs7824937-G	0.405863	3E-17				Affymetrix, Illumina [23467995] (imputed)	N
1053	chr8	61392723	61392724	rs7824937	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	8q12.1	NR	rs7824937-G	0.368567	1E-19		0.01766	[0.014-0.021] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
1053	chr8	61395831	61395832	rs6992869	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	8q12.1		rs6992869-?	NR	7E-10				NR [~ 8900000] (imputed)	N
1053	chr8	61405398	61405399	rs34691513	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	8q12.1		rs34691513-C	NR	3E-14		0.0199	[0.015-0.025] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
1053	chr8	61457784	61457785	rs35625652	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	8q12.1		rs35625652-A	0.625	9E-9				Affymetrix [10369434] (imputed)	N
1053	chr8	61461477	61461481	rs370500810	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	8q12.1		rs370500810-T	NR	3E-16		0.0182	[0.014-0.023] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
1054	chr8	61473319	61473319	rs397778299	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	8q12.1		rs397778299-GT	NR	3E-11		0.0162	[0.011-0.021] unit increase	Affymetrix, Illumina [20536134] (imputed)	N
1054	chr8	61475573	61475573	rs5891768	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	8q12.1	RAB2A	rs5891768-?	NR	2E-11		0.018	[0.013-0.023] unit increase	Affymetrix [5701386] (imputed)	N
1054	chr8	61475583	61475583	rs397698893	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	8q12.1		rs397698893-TA	NR	6E-11		0.0159	[0.011-0.021] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
1054	chr8	61476708	61476709	rs2875973	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	8q12.1	RAB2A	rs2875973-T	0.370506	6E-21		0.021558495	[0.017-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1054	chr8	61518398	61518399	rs12114596	32581359	Saevarsdottir S	2020-06-24	Nature	FLT3 stop mutation increases FLT3 ligand level and risk of autoimmune thyroid disease.	Autoimmune thyroid disease	30,234 European ancestry cases, 724,172 European ancestry controls	NA	8q12.2	RAB2A	rs12114596-T	0.389	5E-10		1.06	[NR]	Affymetrix, Illumina [42900000] (imputed)	N
1054	chr8	61525779	61525780	rs671275	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	8q12.2	RAB2A	rs671275-A	0.24	9E-16		8.05	z-score increase	Affymetrix [4314223] (imputed)	N
1054	chr8	61525962	61525963	rs1384687	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	8q12.2		rs1384687-?	NR	2E-8		0.0168656	[0.011-0.023] unit decrease	NR [6912294] (imputed)	N
1054	chr8	61541272	61541273	rs631408	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	8q12.2		rs631408-C	NR	2E-8		0.0498	[0.033-0.067] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1054	chr8	61548493	61548494	rs626913	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	Total cholesterol levels	up to 237,050 European ancestry individuals, up to 16,935 African ancestry individuals, up to 30,468 South Asian ancestry individuals, up to 8,287 East Asian ancestry individuals, 5,084 Hispanic individuals	up to 286,268 European and unknown ancestry individuals	8q12.2	RAB2A	rs626913-C	NR	8E-8		0.010686332	[0.0068-0.0146] unit increase	Illumina [242289]	N
1054	chr8	61548493	61548494	rs626913	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	Total cholesterol levels	up to 237,050 European ancestry individuals	NA	8q12.2	NR	rs626913-C	0.53	1E-8		0.017	unit increase	Illumina [242289]	N
1054	chr8	61564963	61564964	rs685985	31672989	Lopez-Isac E	2019-10-31	Nat Commun	GWAS for systemic sclerosis identifies multiple risk loci and highlights fibrotic and vasculopathy pathways.	Systemic sclerosis	9,095 European ancestry cases, 17,584 European ancestry controls	NA	8q12.2	RAB2A, CHD7	rs685985-?	0.53	4E-8		1.1494253		Illumina [4723365]	N
1054	chr8	61573241	61573242	rs56274310	33232274	Mohammadnejad A	2020-11-24	Aging (Albany NY)	Generalized correlation coefficient for genome-wide association analysis of cognitive ability in twins.	Cognitive function (mixed linear model)	278 Chinese ancestry dizygotic twins	NA	8q12.2	NR	rs56274310-?	NR	3E-6		87.5579	[51.87-123.25] unit increase	Illumina [5432814] (imputed)	N
1054	chr8	61573241	61573242	rs56274310	33232274	Mohammadnejad A	2020-11-24	Aging (Albany NY)	Generalized correlation coefficient for genome-wide association analysis of cognitive ability in twins.	Cognitive function (kinship model)	278 Chinese ancestry dizygotic twins	NA	8q12.2	NR	rs56274310-?	NR	1E-6		87.7518	[52.2-123.3] unit increase	Illumina [5432814] (imputed)	N
1054	chr8	61591435	61591436	rs113958504	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	8q12.2		rs113958504-T	0.14	1E-21		9.54	z score increase	Affymetrix [9061022] (imputed)	N
1054	chr8	61592877	61592878	rs187025166	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	8q12.2	NR	rs187025166-?	NR	4E-6	(Japanese)	0.8255	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1055	chr8	61607450	61607451	rs13269361	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	8q12.2	NR	rs13269361-?	NR	1E-6				Affymetrix [NR]	N
1055	chr8	61607456	61607457	rs60146492	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	8q12.2		rs60146492-G	0.14	9E-9		5.74	z score increase	Affymetrix [9061022] (imputed)	N
1055	chr8	61607456	61607457	rs60146492	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	8q12.2	NR	rs60146492-G	0.1372	4E-9				NR [9056863] (imputed)	N
1055	chr8	61620612	61620613	rs4738817	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals	NA	8q12.2	CHD7	rs4738817-A	0.4535	7E-9		0.0115306	[0.0076-0.0154] unit decrease	Affymetrix, Illumina [8603712] (imputed)	N
1055	chr8	61620612	61620613	rs4738817	30220432	Haas ME	2018-09-06	Am J Hum Genet	Genetic Association of Albuminuria with Cardiometabolic Disease and Blood Pressure.	Urinary albumin excretion (no hypertensive medication)	302,687 European ancestry individuals without hypertensive medication	NA	8q12.2	CHD7	rs4738817-G	0.549	3E-8		0.00976	[0.0063-0.0132] unit increase	Affymetrix [11709857] (imputed)	N
1055	chr8	61624290	61624291	rs7845701	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	8q12.2		rs7845701-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1055	chr8	61629400	61629401	rs10957156	26414677	Day FR	2015-11-01	Nat Genet	Large-scale genomic analyses link reproductive aging to hypothalamic signaling, breast cancer susceptibility and BRCA1-mediated DNA repair.	Menopause (age at onset)	up to 69,626 European ancestry women	NA	8q12.2	CHD7	rs10957156-A	0.76	5E-9		0.14	[0.1-0.18] years decrease	Affymetrix, Illumina [~ 2600000] (imputed)	N
1055	chr8	61636886	61636887	rs35914442	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	93,063 East Asian ancestry individuals	NA	8q12.2		rs35914442-G	0.179515	7E-9		0.0335097	[0.022-0.045] unit decrease	Illumina [13470073] (imputed)	N
1055	chr8	61636886	61636887	rs35914442	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	8q12.2	CHD7	rs35914442-G	0.0898	6E-17		0.05244074	[0.04-0.065] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1055	chr8	61636886	61636887	rs35914442	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	8q12.2	CHD7	rs35914442-G	0.0898	3E-28		0.06893499	[0.057-0.081] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1055	chr8	61636886	61636887	rs35914442	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	8q12.2	CHD7	rs35914442-G	0.0898	6E-16		0.05059447	[0.038-0.063] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1055	chr8	61639874	61639875	rs28412751	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals, 6,795 African American individuals, 6,324 East Asian ancestry individuals, 2,335 South Asian ancestry individuals, 1,442 Hispanic individuals	NA	8q12.2	CHD7	rs28412751-T	NR	6E-9		0.0116	[0.0077-0.0155] unit decrease	Affymetrix, Illumina [8034757] (imputed)	N
1055	chr8	61639874	61639875	rs28412751	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	8q12.2	CHD7	rs28412751-T	0.4534	2E-6		0.0302	[0.018-0.043] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1055	chr8	61646351	61646351	rs35440906	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	8q12.2		rs35440906-CA	NR	4E-23		0.0209	[0.017-0.025] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
1055	chr8	61646351	61646351	rs35440906	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	8q12.2	CHD7	rs35440906-CA	0.186602	3E-124		0.06740953	[0.062-0.073] unit increase	Affymetrix [93095623] (imputed)	N
1055	chr8	61646351	61646351	rs35440906	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	8q12.2	CHD7	rs35440906-CA	0.18659	2E-65		0.04856192	[0.043-0.054] unit decrease	Affymetrix [93095623] (imputed)	N
1055	chr8	61646351	61646351	rs35440906	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	8q12.2	CHD7	rs35440906-CA	0.1869	3E-44		0.0639525	[0.055-0.073] unit increase	Affymetrix [~ 2500000] (imputed)	N
1055	chr8	61646351	61646351	rs35440906	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	8q12.2	CHD7	rs35440906-CA	0.1869	2E-23		0.04561981	[0.037-0.055] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1055	chr8	61646351	61646351	rs35440906	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of white cells	171,996 European ancestry individuals	NA	8q12.2	CHD7	rs35440906-CA	0.1869	1E-14		0.03437348	[0.026-0.043] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1055	chr8	61646351	61646351	rs35440906	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of granulocytes	170,223 European ancestry individuals	NA	8q12.2	CHD7	rs35440906-CA	0.187	3E-21		0.04250328	[0.034-0.051] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1055	chr8	61648550	61648551	rs13256023	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	8q12.2		rs13256023-C	0.814	2E-34				Affymetrix [10369434] (imputed)	N
1055	chr8	61648550	61648551	rs13256023	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q12.2	NR	rs13256023-C	0.806139	3E-10				Affymetrix, Illumina [17210439] (imputed)	N
1055	chr8	61648550	61648551	rs13256023	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	8q12.2	NR	rs13256023-C	0.813667	1E-11		0.016862	[0.012-0.022] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
1055	chr8	61648550	61648551	rs13256023	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	8q12.2	CHD7	rs13256023-T	0.186	7E-35		0.05694572	[0.048-0.066] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1055	chr8	61650830	61650831	rs7846314	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	8q12.2		rs7846314-T	NR	1E-56		0.0398	[0.035-0.045] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
1055	chr8	61650830	61650831	rs7846314	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	8q12.2		rs7846314-T	NR	3E-100		0.0579	[0.053-0.063] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
1055	chr8	61650830	61650831	rs7846314	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	8q12.2	CHD7	rs7846314-T	0.186726	3E-75		0.052145306	[0.047-0.058] unit increase	Affymetrix [93095623] (imputed)	N
1055	chr8	61650830	61650831	rs7846314	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	8q12.2	CHD7	rs7846314-T	0.186754	1E-133		0.06995206	[0.064-0.076] unit increase	Affymetrix [93095623] (imputed)	N
1055	chr8	61650830	61650831	rs7846314	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	8q12.2	CHD7	rs7846314-T	0.186622	8E-71		0.05059898	[0.045-0.056] unit decrease	Affymetrix [93095623] (imputed)	N
1055	chr8	61650830	61650831	rs7846314	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	8q12.2	CHD7	rs7846314-T	0.186721	2E-72		0.05118706	[0.046-0.057] unit decrease	Affymetrix [93095623] (imputed)	N
1055	chr8	61650830	61650831	rs7846314	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	8q12.2	CHD7	rs7846314-T	0.186789	2E-30		0.03278309	[0.027-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
1055	chr8	61650830	61650831	rs7846314	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q12.2	NR	rs7846314-T	0.190981	2E-96				Affymetrix, Illumina [24649327] (imputed)	N
1055	chr8	61650830	61650831	rs7846314	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	8q12.2	NR	rs7846314-T	0.187345	6E-88		0.046831	[0.042-0.051] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
1055	chr8	61650830	61650831	rs7846314	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q12.2	NR	rs7846314-T	0.192342	2E-160				Affymetrix, Illumina [23114412] (imputed)	N
1055	chr8	61650830	61650831	rs7846314	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	8q12.2	NR	rs7846314-T	0.187341	5E-149		0.063921	[0.059-0.069] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
1055	chr8	61650830	61650831	rs7846314	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	8q12.2	NR	rs7846314-T	0.186954	4E-38		0.032851	[0.028-0.038] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
1055	chr8	61650830	61650831	rs7846314	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	8q12.2		rs7846314-?	NR	1E-58				NR [~ 8900000] (imputed)	N
1055	chr8	61650830	61650831	rs7846314	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	8q12.2	CHD7	rs7846314-T	0.1865	1E-25		0.04834391	[0.039-0.057] unit increase	Affymetrix [~ 2500000] (imputed)	N
1055	chr8	61650830	61650831	rs7846314	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	8q12.2	CHD7	rs7846314-T	0.1865	6E-39		0.06020929	[0.051-0.069] unit increase	Affymetrix [~ 2500000] (imputed)	N
1055	chr8	61650830	61650831	rs7846314	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	8q12.2	CHD7	rs7846314-T	0.1866	5E-44		0.06422946	[0.055-0.073] unit increase	Affymetrix [~ 2500000] (imputed)	N
1055	chr8	61650830	61650831	rs7846314	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	8q12.2	CHD7	rs7846314-T	0.1866	3E-42		0.06265321	[0.054-0.072] unit increase	Affymetrix [~ 2500000] (imputed)	N
1055	chr8	61650830	61650831	rs7846314	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	8q12.2	CHD7	rs7846314-T	0.1865	1E-44		0.06456402	[0.056-0.074] unit increase	Affymetrix [~ 2500000] (imputed)	N
1055	chr8	61650830	61650831	rs7846314	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	8q12.2	CHD7	rs7846314-T	0.1865	2E-34		0.05674002	[0.048-0.066] unit increase	Affymetrix [~ 2500000] (imputed)	N
1055	chr8	61650830	61650831	rs7846314	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	8q12.2	CHD7	rs7846314-T	0.1866	2E-24		0.04679994	[0.038-0.056] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1055	chr8	61650830	61650831	rs7846314	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	8q12.2	CHD7	rs7846314-T	0.1866	5E-36		0.05759455	[0.049-0.067] unit increase	Affymetrix [~ 2500000] (imputed)	N
1055	chr8	61650830	61650831	rs7846314	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	8q12.2	CHD7	rs7846314-T	0.1866	2E-38		0.05996328	[0.051-0.069] unit increase	Affymetrix [~ 2500000] (imputed)	N
1055	chr8	61651706	61651707	rs900504	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	8q12.2		rs900504-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1055	chr8	61652143	61652144	rs4288413	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	78,744 East Asian ancestry individuals	NA	8q12.2	NR	rs4288413-G	0.229834	7E-17		0.050426	[0.039-0.062] SD units increase	Affymetrix, Illumina [16289093] (imputed)	N
1055	chr8	61660162	61660163	rs11775560	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	8q12.2		rs11775560-G	NR	4E-9		0.015	[0.01-0.02] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
1055	chr8	61660162	61660163	rs11775560	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	8q12.2		rs11775560-A	0.813	1E-35				Affymetrix [10369434] (imputed)	N
1055	chr8	61660162	61660163	rs11775560	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q12.2	NR	rs11775560-G	0.193617	9E-13				Affymetrix, Illumina [24246363] (imputed)	N
1055	chr8	61662037	61662038	rs7816126	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	8q12.2	NR	rs7816126-C	0.2669	7E-11				NR [9056863] (imputed)	N
1055	chr8	61679037	61679038	rs13277976	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	8q12.2	CHD7	rs13277976-T	0.7588	4E-14		0.03153353	[0.023-0.04] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1055	chr8	61682026	61682027	rs35254359	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	151,807 East Asian ancestry individuals	NA	8q12.2	NR	rs35254359-C	0.815054	1E-12		0.033465	[0.024-0.043] SD units decrease	Affymetrix, Illumina [16710636] (imputed)	N
1055	chr8	61684248	61684249	rs140727637	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	8q12.2	CHD7	rs140727637-A	0.75625	3E-24		0.026615694	[0.021-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
1055	chr8	61685193	61685194	rs7842389	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	8q12.2		rs7842389-?	NR	8E-31				NR [~ 8900000] (imputed)	N
1055	chr8	61687074	61687075	rs9298041	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	8q12.2	NR	rs9298041-?	NR	8E-6		0.137226	[0.077-0.198] unit decrease	NR [13958389] (imputed)	N
1055	chr8	61687074	61687075	rs9298041	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Hyperopia	10,828 European ancestry hyperopia cases, 21,416 European ancestry emmetropia controls	NA	8q12.2	NR	rs9298041-?	NR	8E-6		0.118245	[0.066-0.17] unit increase	NR [13958389] (imputed)	N
1055	chr8	61688492	61688492	rs11382482	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	8q12.2	CHD7	rs11382482-AT	0.090212	1E-19		0.03553364	[0.028-0.043] unit decrease	Affymetrix [93095623] (imputed)	N
1055	chr8	61701056	61701057	rs4237036	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Neutrophil count	62,076 Japanese ancestry individuals	NA	8q12.2	CHD7	rs4237036-?	NR	4E-14		0.05135	[0.038-0.065] unit decrease novel	Illumina [6108953] (imputed)	N
1055	chr8	61704054	61704055	rs13280978	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	82,810 East Asian ancestry individuals	NA	8q12.2		rs13280978-T	0.77594	1E-20		0.051899	[0.041-0.063] unit decrease	Illumina [13467171] (imputed)	N
1055	chr8	61704054	61704055	rs13280978	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	White blood cell count	107,964 Japanese ancestry individuals	NA	8q12.2	CHD7	rs13280978-?	NR	3E-13		0.03682	[0.027-0.047] unit decrease novel	Illumina [6108953] (imputed)	N
1055	chr8	61704816	61704817	rs4562360	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	8q12.2	NR	rs4562360-G	0.756947	4E-20		0.0323526	[0.025-0.039] unit increase	Affymetrix [16577424] (imputed)	N
1055	chr8	61712369	61712370	rs4289855	29728651	Li X	2018-04-27	Neuropsychopharmacology	Common variants on 6q16.2, 12q24.31 and 16p13.3 are associated with major depressive disorder.	Major depressive disorder	84,847 European ancestry cases,  241,266 European ancestry controls, 5,303 Han Chinese ancestry cases, 5,337 Han Chinese ancestry controls	2,659 European ancestry cases, 17,237 European ancestry controls	8q12.2	NR	rs4289855-T	0.228	2E-7		1.036	[NR]	Affymetrix, Illumina [at least 1235109] (imputed)	N
1055	chr8	61712442	61712443	rs10957159	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	8q12.2	NR	rs10957159-G	0.900369	3E-8		0.018806	[0.012-0.025] unit increase	NR [NR]	N
1055	chr8	61717157	61717158	rs77753524	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	8q12.2		rs77753524-G	NR	5E-10		0.0231	[0.016-0.03] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1055	chr8	61718464	61718465	rs28609390	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	154,355 East Asian ancestry individuals	NA	8q12.2		rs28609390-A	0.770051	2E-17		0.0342408	[0.026-0.042] unit decrease	Illumina [13479091] (imputed)	N
1055	chr8	61722731	61722732	rs6989150	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	8q12.2		rs6989150-G	NR	4E-8		0.017	[0.011-0.023] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
1055	chr8	61722731	61722732	rs6989150	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q12.2	NR	rs6989150-G	0.111269	1E-42				Affymetrix, Illumina [19872809] (imputed)	N
1055	chr8	61723776	61723777	rs6994642	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Eosinophil counts	62,076 Japanese ancestry individuals	NA	8q12.2	CHD7	rs6994642-?	NR	3E-8		0.04171	[0.027-0.056] unit decrease novel	Illumina [6108953] (imputed)	N
1055	chr8	61727586	61727587	rs4738828	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	8q12.2	NR	rs4738828-T		4E-10		0.07	[0.05-0.09] unit increase	NR [NR]	N
1055	chr8	61731072	61731073	rs4237037	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	8q12.2	NR	rs4237037-A	0.757622	7E-13		0.0164615	[0.012-0.021] unit increase	Affymetrix [16583148] (imputed)	N
1055	chr8	61732520	61732521	rs6471902	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	8q12.2		rs6471902-A	0.243	1E-14				Affymetrix [10369434] (imputed)	N
1056	chr8	61755867	61755868	rs4449834	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	8q12.2		rs4449834-G	0.27	3E-10		6.32	z score increase	Affymetrix [9061022] (imputed)	N
1056	chr8	61755867	61755868	rs4449834	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	8q12.2	CHD7	rs4449834-T	0.7296	4E-13		0.02932891	[0.021-0.037] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1056	chr8	61773284	61773285	rs10094382	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	8q12.2		rs10094382-?	NR	2E-21				NR [~ 8900000] (imputed)	N
1056	chr8	61782303	61782304	rs7844586	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	8q12.2	NR	rs7844586-C	0.75114	1E-8		0.0200617	[0.013-0.027] unit increase	Affymetrix [16577313] (imputed)	N
1056	chr8	61788143	61788144	rs13279104	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	8q12.2		rs13279104-T	0.878	7E-9		0.011	[0.0071-0.0149] unit decrease	NR [NR] (imputed)	N
1056	chr8	61788143	61788144	rs13279104	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	8q12.2	NR	rs13279104-C	0.122	2E-8		0.00926881	[0.006-0.0125] unit increase	NR [9732723] (imputed)	N
1056	chr8	61792879	61792883	rs199844134	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	8q12.2		rs199844134-C	0.442563	1E-17		0.019164938	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1056	chr8	61811763	61811764	rs10156284	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,963 Sub-Saharan African ancestry females, 3,931 Sub-Saharan African ancestry males	NA	8q12.2		rs10156284-T	0.754857	4E-6		0.00539236	[-0.00049-0.01127] unit increase	Illumina [7666802] (imputed)	N
1056	chr8	61811763	61811764	rs10156284	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,931 Sub-Saharan African ancestry males	NA	8q12.2		rs10156284-T	0.754261	7E-6		0.0143775	[0.0083-0.0205] unit decrease	Illumina [13900000] (imputed)	N
1056	chr8	61814773	61814773	rs34105345	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	8q12.2	RP11-33I11.3	rs34105345-AC	0.878837	3E-12		0.02376565	[0.017-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
1056	chr8	61815844	61815845	rs7828911	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	8q12.2		rs7828911-A	NR	3E-8		0.0236	[0.015-0.032] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
1056	chr8	61840557	61840558	rs13257990	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	8q12.2	CHD7	rs13257990-C	NR	6E-6		1.0912	NR	Affymetrix, Illumina [8278136] (imputed)	N
1057	chr8	61876043	61876044	rs10104895	22424883	Imboden M	2012-03-15	J Allergy Clin Immunol	Genome-wide association study of lung function decline in adults with and without asthma.	Pulmonary function decline	1,441 European ancestry asthma cases, 2,677 European ancestry controls	1,160 European ancestry asthma cases, 10,858 European ancestry controls	8q12.2	CHD7	rs10104895-?	NR	2E-6	(FEV1/FVC decline in asthmatics)	0.264	[0.16-0.37] unit decrease	Illumina [~ 2500000] (imputed)	N
1057	chr8	61879943	61879944	rs142143628	28203683	Heit JA	2017-02-16	Thromb Haemost	Identification of unique venous thromboembolism-susceptibility variants in African-Americans.	Venous thromboembolism adjusted for sickle cell variant rs77121243-T	393 African American cases, 4,941 African American controls.	NR	8q12.2	LOC100130298	rs142143628-T	0.0103	4E-8		4.973	[2.801-8.83]	Affymetrix, Illumina [14074516] (imputed)	N
1057	chr8	61911069	61911070	rs10957177	31809533	Han X	2019-09-06	Hum Mol Genet	Genome-wide association analysis of 95 549 individuals identifies novel loci and genes influencing optic disc morphology.	Optic disc size	67,040 British ancestry individuals	28,509 European ancestry individuals	8q12.2	LOC100130298	rs10957177-A	0.75	1E-10		0.01	unit increase	Affymetrix [8928767] (imputed)	N
1057	chr8	61958501	61958502	rs13279512	29478698	Cheng Z	2018-01-11	Biol Psychiatry	Genome-wide Association Study Identifies a Regulatory Variant of RGMA Associated With Opioid Dependence in European Americans.	Opioid dependence	3,058 European ancestry individuals	2,014 African American individuals	8q12.2	NR	rs13279512-?	NR	9E-7	(EA)	0.4	unit increase	Illumina [at least 4700000] (imputed)	N
1057	chr8	61969524	61969525	rs143346730	31560688	Geidenstam N	2019-09-27	PLoS One	Using metabolite profiling to construct and validate a metabolite risk score for predicting future weight gain.	Tyrosine levels	1,937 individuals	NA	8q12.2	CLVS1	rs143346730-A	0.996	6E-7		1.7501	[1.06-2.44] unit increase	Affymetrix, Illumina [up to 22000000] (imputed)	N
1057	chr8	61969578	61969579	rs3857971	31809533	Han X	2019-09-06	Hum Mol Genet	Genome-wide association analysis of 95 549 individuals identifies novel loci and genes influencing optic disc morphology.	Optic disc size	67,040 British ancestry individuals	28,509 European ancestry individuals	8q12.2	LOC100130298	rs3857971-A	0.3	2E-16		0.02	unit decrease	Affymetrix [8928767] (imputed)	N
1057	chr8	61992255	61992256	rs10097298	28644415	Guenard F	2017-06-23	Nutrients	Genome-Wide Association Study of Dietary Pattern Scores.	Prudent dietary pattern	141 individuals	NA	8q12.2	LOC100130298	rs10097298-?		3E-6				Illumina [2668805]	N
1057	chr8	61994780	61994781	rs6471915	28644415	Guenard F	2017-06-23	Nutrients	Genome-Wide Association Study of Dietary Pattern Scores.	Prudent dietary pattern	141 individuals	NA	8q12.2	LOC100130298	rs6471915-?		2E-6				Illumina [2668805]	N
1058	chr8	62034283	62034284	rs10216609	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	8q12.2		rs10216609-A	NR	2E-8		0.0141	[0.0092-0.019] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1058	chr8	62054462	62054463	rs12681792	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		8q12.2	CLVS1	rs12681792-C	0.807463	4E-8		0.0095618	[0.0061-0.013] unit decrease	Affymetrix [12370749]	N
1058	chr8	62054462	62054463	rs12681792	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	8q12.2	NR	rs12681792-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
1058	chr8	62054462	62054463	rs12681792	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	8q12.2		rs12681792-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1058	chr8	62054462	62054463	rs12681792	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	8q12.2	NA	rs12681792-A	0.2024	3E-12		0.015	[0.011-0.019] unit increase	NR [~ 27400000] (imputed)	N
1058	chr8	62054462	62054463	rs12681792	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	8q12.2	NA	rs12681792-A	0.2024	3E-12		0.015	[0.011-0.019] unit increase	NR [~ 27400000] (imputed)	N
1058	chr8	62054462	62054463	rs12681792	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NA	8q12.2	intergenic	rs12681792-?	0.78	9E-7		1.08	[1.04-1.11]	Affymetrix, Illumina [~ 2300000] (imputed)	N
1058	chr8	62055666	62055667	rs7830371	24529757	Xie T	2014-01-17	Neurobiol Aging	Genome-wide association study combining pathway analysis for typical sporadic amyotrophic lateral sclerosis in Chinese Han populations.	Amyotrophic lateral sclerosis (sporadic)	250 Han Chinese ancestry cases, 250 Han Chinese ancestry controls	NA	8q12.2	LOC100130298	rs7830371-?		8E-7				Illumina [859311]	N
1058	chr8	62078903	62078904	rs6471932	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	8q12.2	NR	rs6471932-T	NR	1E-14		0.02	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
1058	chr8	62086175	62086176	rs4738873	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	8q12.2	CLVS1	rs4738873-A	0.206	2E-6		0.018	[0.01-0.025] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1058	chr8	62086175	62086176	rs4738873	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	8q12.2	CLVS1	rs4738873-A	0.195	5E-7	(EA)	0.02	[0.012-0.028] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1059	chr8	62135735	62135736	rs6985602	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	8q12.2	CLVS1	rs6985602-A	0.9256	3E-6		0.061	[0.035-0.087] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1059	chr8	62139388	62139389	rs78148796	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8q12.2	NR	rs78148796-G	0.02787	4E-9	(S100A9)	0.1126	NR unit increase	Illumina [1671387] (imputed)	N
1059	chr8	62141570	62141571	rs77066711	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		CLVS1	rs77066711-?	NR	2E-8	(female)	1.56469	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1059	chr8	62148881	62148882	rs2931353	30134803	Matana A	2018-04-11	Mol Med	Genome-wide meta-analysis identifies novel loci associated with parathyroid hormone level.	Plasma parathyroid hormone levels	806 Korculan (founder/genetic isolate) individuals, 831 Vis (founder/genetic isolate) individuals, 959 Croatian ancestry individuals	NA	8q12.2	NR	rs2931353-?	NR	1E-6	(male)	0.21	[0.13-0.29] unit increase	Illumina [7411206] (imputed)	N
1060	chr8	62356699	62356700	rs74382792	31006051	Kharazmi M	2019-04-20	Calcif Tissue Int	A Genome-Wide Association Study of Bisphosphonate-Associated Atypical Femoral Fracture.	Bisphosphonate-associated atypical femoral fracture	50 European ancestry cases, 1 Chilean ancestry case, 4,891 European ancestry controls	NA	8q12.3	CLVS1	rs74382792-G	0.014	1E-6		6.941	[3.181-15.15]	Illumina [7585874] (imputed)	N
1060	chr8	62383747	62383748	rs17788873	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	8q12.3	NR	rs17788873-?	NR	3E-6				Affymetrix [NR]	N
1061	chr8	62401961	62401962	rs7826834	24823311	Guan W	2014-05-13	Circ Cardiovasc Genet	Genome-wide association study of plasma N6 polyunsaturated fatty acids within the cohorts for heart and aging research in genomic epidemiology consortium.	Plasma omega-6 polyunsaturated fatty acid levels (gamma-linolenic acid)	8,631 European ancestry individuals	NA	8q12.3	RLBP1L1	rs7826834-T	0.015	3E-6		0.02	[NR] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1061	chr8	62409427	62409428	rs903027	21116278	Furney SJ	2010-11-30	Mol Psychiatry	Genome-wide association with MRI atrophy measures as a quantitative trait locus for Alzheimer's disease.	Whole-brain volume	434 European ancestry mild cognitive impairment cases, 245 European ancestry Alzheimer's disease cases, 284 European ancestry controls	NA	8q12.3	RLBP1L1	rs903027-?	NR	6E-6		0.009	[NR] unit decrease	Illumina [478011]	N
1061	chr8	62435563	62435564	rs139396667	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	8q12.3		rs139396667-A	NR	3E-7		4.7785	[2.99-6.57] unit increase	Illumina [NR] (imputed)	N
1061	chr8	62481519	62481520	rs142916219	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	Resting heart rate	19,920 British ancestry individuals from 6863 families.	NA	8q12.3	ASPH	rs142916219-G	0.00374773	2E-8		5.9711304	[3.88-8.06] beats per minute increase	Illumina [24111857] (imputed)	N
1062	chr8	62540133	62540134	rs112760834	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	8q12.3	ASPH	rs112760834-T	0.033	4E-17	(Aspartyl/asparaginyl beta-hydroxylase, ASPH.6998.106.3)	0.58	[0.44-0.72] unit decrease	Affymetrix [10572788] (imputed)	N
1062	chr8	62554411	62554412	rs7812327	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ASPH	5,366 Icelandic ancestry individuals	NA	8q12.3		rs7812327-T	0.2988	3E-23		0.203229	[0.16-0.24] unit decrease	Illumina [7506463] (imputed)	N
1062	chr8	62554411	62554412	rs7812327	31991592	Coltell O	2020-01-24	Nutrients	Genome-Wide Association Study for Serum Omega-3 and Omega-6 Polyunsaturated Fatty Acids: Exploratory Analysis of the Sex-Specific Effects and Dietary Modulation in Mediterranean Subjects with Metabolic Syndrome.	Serum omega-6 to omega-3 polyunsaturated fatty acid ratio in metabolic syndrome	426 Mediterranean individuals	NA	8q12.3	ASPH	rs7812327-T	0.333	7E-6		0.027	[0.015-0.039] unit decrease	Illumina [621723]	N
1062	chr8	62605258	62605259	rs2350923	30323354	Lee JY	2018-10-15	Sci Rep	BRCA1/2-negative, high-risk breast cancers (BRCAX) for Asian women: genetic susceptibility loci and their potential impacts.	BRCA1/2-negative high-risk breast cancer	1,469 Korean ancestry cases, 5,979 Korean ancestry controls	NA	8q12.3	ASPH	rs2350923-T	0.76	8E-7		1.28	[1.16-1.42]	Affymetrix, Illumina [3378933] (imputed)	N
1062	chr8	62618621	62618622	rs115581627	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ASPH	5,366 Icelandic ancestry individuals	NA	8q12.3		rs115581627-T	0.03757	5E-24		0.493375	[0.4-0.59] unit decrease	Illumina [7506463] (imputed)	N
1063	chr8	62660577	62660578	rs2350578	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	8q12.3	ASPH	rs2350578-G	0.37375	4E-18	(ASPH, 6998_106_3)	0.22208355	[0.17-0.27] unit decrease	Illumina [> 1000000] (imputed)	N
1063	chr8	62706101	62706102	rs72660930	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	8q12.3	NR	rs72660930-T	0.02	2E-6		1.3	[1.18-1.42]	Illumina [8468885] (imputed)	N
1063	chr8	62712313	62712314	rs17208884	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8q12.3	NR	rs17208884-C	0.02265	5E-9	(SDS)	0.06507	NR unit increase	Illumina [1671387] (imputed)	N
1063	chr8	62732935	62732936	rs118029233	33958783	Liu G	2021-05-06	Nat Genet	Genome-wide survival study identifies a novel synaptic locus and polygenic score for cognitive progression in Parkinson's disease.	Parkinson's disease progression (cognitive)	2,650 European and unknown ancestry individuals	1,171 individuals	8q12.3	RP11-705O24.1	rs118029233-G	0.038	3E-6		3.3	[2.24-4.84] (HR)	Illumina [11220132] (imputed)	N
1064	chr8	62812870	62812871	rs118004610	33958783	Liu G	2021-05-06	Nat Genet	Genome-wide survival study identifies a novel synaptic locus and polygenic score for cognitive progression in Parkinson's disease.	Parkinson's disease progression (cognitive)	2,650 European and unknown ancestry individuals	1,171 individuals	8q12.3	RP11-705O24.1	rs118004610-C	0.039	2E-6		2.87	[1.98-4.15] (HR)	Illumina [11220132] (imputed)	N
1064	chr8	62898948	62898949	rs34746873	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Neurofibrillary tangles	up to 4,707 individuals	NA	8q12.3	intergenic	rs34746873-G	0.5884	2E-6	(Ordinal I)	0.1865	[0.11-0.26] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1065	chr8	62926146	62926147	rs344235	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in overweight individuals	up to 10,058 European ancestry male individuals, up to 7,189 European ancestry female individuals	NA	8q12.3	ASPH, NKAIN3	rs344235-G	0.61	4E-6	(women)	0.08	[0.047-0.113] kg/m2 increase	Affymetrix, Illumina [at least 188473] (imputed)	N
1065	chr8	62945022	62945023	rs344201	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	8q12.3	NR	rs344201-?	NR	4E-6		0.0082515	[0.0047-0.0118] unit decrease	Affymetrix [805426] (imputed)	N
1065	chr8	63009592	63009593	rs10111944	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Coronary artery disease in hypertension	816 Korean ancestry cases, 15,488 Korean ancestry controls	NA	8q12.3		rs10111944-A	0.02021	4E-7		2.048	[1.554-2.7]	Affymetrix [7975321] (imputed)	N
1066	chr8	63051007	63051008	rs11775812	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	8q12.3	NR	rs11775812-?	NR	2E-6				Affymetrix [NR]	N
1066	chr8	63133946	63133947	rs78927039	34779240	Cheng B	2021-11-01	Bone Joint Res	Gut microbiota is associated with bone mineral density : an observational and genome-wide environmental interaction analysis in the UK Biobank cohort.	Femur total bone mineral density x gut microbiota (genus Lactococcus) interaction	2,293 European ancestry individuals	NA	8q12.3		rs78927039-C	NR	2E-8		0.457	[0.3-0.62] unit decrease	Affymetrix [509886] (imputed)	N
1067	chr8	63203770	63203771	rs151059677	33958783	Liu G	2021-05-06	Nat Genet	Genome-wide survival study identifies a novel synaptic locus and polygenic score for cognitive progression in Parkinson's disease.	Parkinson's disease progression (cognitive)	2,650 European and unknown ancestry individuals	1,171 individuals	8q12.3	NKAIN3	rs151059677-A	0.086	6E-8		2.45	[1.84-3.28] (HR)	Illumina [11220132] (imputed)	N
1067	chr8	63252441	63252442	rs145273360	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	8q12.3	NKAIN3	rs145273360-A	0.9768	2E-8	(Methionine)	0.2177	[0.14-0.29] unit increase	Illumina [~ 47000000] (imputed)	N
1067	chr8	63258916	63258917	rs142014203	23568457	Wade TD	2013-04-09	Int J Eat Disord	Genetic variants associated with disordered eating.	Bulimia nervosa	151 European ancestry female cases, 2,291 European ancestry female controls	NA	8q12.3	NKAIN3	rs142014203-T	0.974	9E-7		0.126	[0.075-0.177] unit decrease	Illumina [6150213] (imputed)	N
1067	chr8	63298356	63298357	rs117278842	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		NKAIN3	rs117278842-?	NR	3E-12		3.27426	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1068	chr8	63356624	63356625	rs16928927	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Reading ability (multivariate)	up to 3,468 European ancestry individuals	NA	8q12.3	NR	rs16928927-?		1E-7				Illumina [up to 6969139] (imputed)	N
1068	chr8	63356624	63356625	rs16928927	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Rapid automised naming of letters	2,563 European ancestry individuals	NA	8q12.3	NKAIN3	rs16928927-C	0.934943333	2E-8		0.402818	[0.26-0.54] unit decrease	Illumina [6952813] (imputed)	N
1068	chr8	63409287	63409288	rs13255137	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	8q12.3	NR	rs13255137-T	0.09	9E-6		1.12	[1.06-1.18]	Illumina [8468885] (imputed)	N
1068	chr8	63410322	63410323	rs34720850	29187748	Morey RA	2017-11-30	Transl Psychiatry	Genome-wide association study of subcortical brain volume in PTSD cases and trauma-exposed controls.	Caudate volume in trauma-exposed individuals	36 African American post-traumatic stress disorder cases, 38 African American trauma-exposed controls, 30 European ancestry post-traumatic stress disorder cases, 53 European ancestry trauma-exposed controls	NA	8q12.3	NKAIN3	rs34720850-?	NR	8E-7	(right hemisphere)	423.5	mm3 increase	Illumina [2711511] (imputed)	N
1068	chr8	63432791	63432792	rs10156309	25085501	Bunyavanich S	2014-08-02	BMC Med Genomics	Integrated genome-wide association, coexpression network, and expression single nucleotide polymorphism analysis identifies novel pathway in allergic rhinitis.	Allergic rhinitis	872 European ancestry cases, 1,193 Latino cases, 647 African American/Afro-Caribbean cases, 1,162 European ancestry controls, 1,133 Latino controls, 626 African American/Afro-Caribbean controls	NA	8q12.3	NKAIN3	rs10156309-?	NR	3E-7	(EA)	3.23	[1.33-]	Affymetrix, Illumina [NR] (imputed)	N
1070	chr8	63621568	63621569	rs2882926	24024966	Teumer A	2013-08-14	J Clin Periodontol	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (PAL4Q3)	up to 2,969 European ancestry individuals	NA	8q12.3	NKAIN3	rs2882926-A	0.11	7E-6	(Age 20-60 years)	1.56	[1.28-1.90]	Affymetrix, Illumina [up to 17585496] (imputed)	N
1071	chr8	63731108	63731109	rs145682026	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	8q12.3	NKAIN3	rs145682026-C	0.0170647123540832	5E-6	(F_Sutterellaceae_HB)	1.50846	[0.86-2.16] unit decrease	Illumina [7711310] (imputed)	N
1071	chr8	63784704	63784705	rs4276687	32724131	Li QS	2020-07-28	Sci Rep	Genome-wide association study and polygenic risk score analysis of esketamine treatment response.	Response to esketamine in treatment resistant depression	255 European ancestry individuals	NA	8q12.3	NR	rs4276687-?		4E-6		6.8847	[4-9.77] unit decrease	NR [NR] (imputed)	N
1072	chr8	63843630	63843631	rs4557697	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	8q12.3	Intergenic	rs4557697-A	NR	8E-9	(between families)	5.761	unit decrease	Affymetrix [up to 15107142] (imputed)	N
1072	chr8	63883592	63883593	rs7834588	22437554	Major JM	2012-03-21	J Nutr	Genome-wide association study identifies three common variants associated with serologic response to vitamin E supplementation in men.	Response to Vitamin E supplementation	2,112 European ancestry individuals	NA	8q12.3	NKAIN3	rs7834588-T	0.41	6E-7	(alpha-TOH)	0.03	[0.010-0.050] mg/L increase	Illumina [549989]	N
1072	chr8	63903652	63903653	rs139894716	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	8q12.3	NKAIN3	rs139894716-A	0.0099	2E-6		0.488	[0.29-0.69] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1072	chr8	63923763	63923764	rs10957266	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	8q12.3	GGH	rs10957266-C	0.071	1E-68	(Gamma-glutamyl hydrolase, GGH.9370.69.3)	0.8	[0.7-0.9] unit increase	Affymetrix [10572788] (imputed)	N
1072	chr8	63940961	63940962	rs3780129	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q12.3	NR	rs3780129-T	0.0919843	2E-10				Affymetrix, Illumina [24653286] (imputed)	N
1072	chr8	63943047	63943048	rs116323041	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	8q12.3	NR	rs116323041-C	0.035	2E-42	(Gamma-glutamyl hydrolase, GGH.9370.69.3)	1.05	[0.89-1.21] unit increase	Affymetrix [10572788] (imputed)	N
1072	chr8	63946542	63946542	rs111291669	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	8q12.3		rs111291669-TTA	NR	1E-11		0.0183	[0.013-0.024] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
1072	chr8	63946542	63946542	rs111291669	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	8q12.3	NR	rs111291669-TTA	0.3044	1E-8		0.001497	[0.001-0.002] unit decrease	Affymetrix [NR] (imputed)	N
1072	chr8	63951680	63951681	rs719235	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GGH	5,361 Icelandic ancestry individuals	NA	8q12.3		rs719235-A	0.2519	1E-77		0.398392	[0.36-0.44] unit decrease	Illumina [7506463] (imputed)	N
1072	chr8	63952005	63952006	rs3758147	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GGH	5,361 Icelandic ancestry individuals	NA	8q12.3		rs3758147-A	0.08009	9E-112		0.747828	[0.68-0.81] unit increase	Illumina [7506463] (imputed)	N
1073	chr8	63979487	63979488	rs4739046	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	8q12.3	GGH	rs4739046-T	0.92015625	2E-56	(GGH, 9370_69_3)	0.71117145	[0.62-0.8] unit decrease	Illumina [> 1000000] (imputed)	N
1073	chr8	64025055	64025056	rs34635744	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	8q12.3	NR	rs34635744-T	0.304	1E-49	(Gamma-glutamyl hydrolase, GGH.9370.69.3)	0.39	[0.33-0.45] unit decrease	Affymetrix [10572788] (imputed)	N
1073	chr8	64029090	64029091	rs10957273	32724131	Li QS	2020-07-28	Sci Rep	Genome-wide association study and polygenic risk score analysis of esketamine treatment response.	Response to esketamine (responder status) in treatment resistant depression	255 European ancestry individuals	NA	8q12.3	TTPA, YTHDF3-AS1	rs10957273-?		8E-7		0.3297	[-0.1111-0.7705]	NR [NR] (imputed)	N
1073	chr8	64034746	64034747	rs4739050	32724131	Li QS	2020-07-28	Sci Rep	Genome-wide association study and polygenic risk score analysis of esketamine treatment response.	Response to esketamine in treatment resistant depression	255 European ancestry individuals	NA	8q12.3	TTPA	YTHDF3-AS1		6E-8		7.4888	[4.82-10.16] unit increase	NR [NR] (imputed)	N
1074	chr8	64104091	64104092	rs4739066	26708285	Wakil SM	2016-02-01	Atherosclerosis	A genome-wide association study reveals susceptibility loci for myocardial infarction/coronary artery disease in Saudi Arabs.	Myocardial infarction	2,563 Saudi Arab ancestry cases, 1,868 Saudi Arab ancestry controls	866 Saudi Arab ancestry cases, 371 Saudi Arab ancestry controls	8q12.3	YTHDF3	rs4739066-A	0.86	7E-9		1.369863	[NR]	Affymetrix [537798]	N
1075	chr8	64267167	64267168	rs566396343	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Uterine fibroids	21,024 European ancestry cases, 237,694 European ancestry controls, 14,475 East Asian ancestry cases, 65,733 East Asian ancestry controls	NA	8q12.3		rs566396343-G	NR	2E-8		1.5695	[1.02-2.12] unit increase	Affymetrix, Illumina [25795146] (imputed)	N
1075	chr8	64267167	64267168	rs566396343	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Uterine fibroids	14,475 East Asian ancestry cases, 65,733 East Asian ancestry controls	NA	8q12.3		rs566396343-G	6.53386E-4	2E-8		1.5695118	[1.02-2.12] unit increase	Illumina [13401454] (imputed)	N
1075	chr8	64341553	64341554	rs2011689	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	8q12.3	NR	rs2011689-A	0.389438	5E-9		0.0128969	[0.0086-0.0172] unit increase	NR [NR]	N
1076	chr8	64428513	64428514	rs7000642	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals, 21,077 African American individuals, 33,689 South Asian ancestry individuals, 4,586 Hispanic individuals	354,096 European ancestry individuals, 63,282 African American individuals, 4,792 East Asian ancestry individuals, 22,802 Hispanic individuals, 2,695 Native American ancestry individuals	8q12.3		rs7000642-T	0.4618	3E-9		0.11831125	[0.077-0.16] mmHg increase	Affymetrix, Illumina [247314] (imputed)	N
1076	chr8	64431042	64431043	rs34943930	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	8q12.3		rs34943930-G	0.887	2E-11		0.012	[0.0081-0.0159] unit decrease	NR [NR] (imputed)	N
1076	chr8	64476238	64476239	rs114007472	28736931	Rotroff DM	2017-07-24	Clin Pharmacol Ther	Genetic Variants in HSD17B3, SMAD3, and IPO11 Impact Circulating Lipids in Response to Fenofibrate in Individuals With Type 2 Diabetes.	Total cholesterol change in response to fenofibrate in statin-treated type 2 diabetes	781 European ancestry individuals, 138 African American ancestry individuals, 345 unknown ancestry individuals		8q12.3	intergenic	rs114007472-?	NR	8E-7	(AA)	0.071	unit increase	Affymetrix, Illumina [8129838] (imputed)	N
1077	chr8	64487671	64487672	rs6986473	31190057	Dashti HS	2019-06-13	Am J Clin Nutr	Genome-wide association study of breakfast skipping links clock regulation with food timing.	Breakfast skipping	1,359 European ancestry cases, 10,604 European ancestry controls	NA	8q12.3	YTHDF3	rs6986473-T	0.773	4E-8		0.0175	[0.011-0.024] unit increase	Affymetrix, Illumina [up to 38050714] (imputed)	N
1077	chr8	64487671	64487672	rs6986473	31190057	Dashti HS	2019-06-13	Am J Clin Nutr	Genome-wide association study of breakfast skipping links clock regulation with food timing.	Breakfast cereal skipping frequency	193,860 European ancestry individuals	NA	8q12.3	YTHDF3	rs6986473-T	0.773	4E-8		0.0175	[0.011-0.024] unit increase	Affymetrix [up to 73355667] (imputed)	N
1077	chr8	64501743	64501744	rs2354862	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	8q12.3		rs2354862-?	NR	1E-13				NR [~ 8900000] (imputed)	N
1077	chr8	64501743	64501744	rs2354862	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	NA	8q12.3	YTHDF3	rs2354862-A	0.6407	2E-15		0.2507	[0.19-0.31] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1077	chr8	64511274	64511275	rs10110699	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Cigarettes smoked per day (MTAG)	up to 403,928 European ancestry individuals	NA	8q12.3	NR	rs10110699-C	0.837	2E-8		0.0167425	[0.011-0.023] unit decrease	NR [9732723] (imputed)	N
1077	chr8	64525346	64525347	rs11777872	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	8q12.3		rs11777872-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1077	chr8	64527398	64527399	rs1217091	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week)	up to 941,280 European ancestry individuals	NA	8q12.3	NR	rs1217091-C	0.812	7E-11		0.012160827	[0.0085-0.0158] unit increase	NR [~ 10000000] (imputed)	N
1077	chr8	64528324	64528325	rs1149450	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Executive function (trail making test B)	78,547 British ancestry individuals	NA	8q12.3		rs1149450-?	NR	1E-10				NR [7857346] (imputed)	N
1077	chr8	64528512	64528513	rs187251765	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	8q12.3	NR	rs187251765-?	NR	2E-6		17.045	NR unit increase	Affymetrix [at least 600000] (imputed)	N
1077	chr8	64552778	64552779	rs77636220	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	8q12.3	LOC102724612, LINC01289	rs77636220-A	0.204	3E-11	(Japanese)	0.028	[0.02-0.036] unit increase	Illumina [6108953] (imputed)	N
1077	chr8	64565956	64565957	rs2060859	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	163,835 East Asian ancestry individuals	NA	8q12.3		rs2060859-T	0.765624	5E-11		0.0247939	[0.017-0.032] unit decrease	Illumina [13479178] (imputed)	N
1077	chr8	64567521	64567522	rs10091265	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	8q12.3		rs10091265-G	NR	4E-16		0.0142	[0.011-0.018] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1077	chr8	64567521	64567522	rs10091265	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	8q12.3		rs10091265-G	NR	7E-9		0.0121	[0.008-0.0162] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
1077	chr8	64567521	64567522	rs10091265	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	8q12.3		rs10091265-G	NR	2E-15		0.0159	[0.012-0.02] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1077	chr8	64567669	64567670	rs1217106	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking behaviour (cigarettes smoked per day)	up to 153,918 European ancestry individuals	NA	8q12.3	YTHDF3	rs1217106-G	0.782	4E-9		0.0291	[0.019-0.039] unit decrease	Illumina [~ 250000] (imputed)	N
1077	chr8	64604217	64604218	rs790564	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Pork consumption	335,576 European ancestry individuals	NA	8q12.3	intergenic	rs790564-?	NR	2E-10		0.00375331	[-0.00164-0.00915] unit decrease	Affymetrix [25921788] (imputed)	N
1077	chr8	64604217	64604218	rs790564	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Oily fish consumption	335,576 European ancestry individuals	NA	8q12.3	intergenic	rs790564-?	NR	2E-10		0.0174275	[0.012-0.023] unit decrease	Affymetrix [25921788] (imputed)	N
1077	chr8	64604217	64604218	rs790564	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking behaviour (cigarettes smoked per day)	up to 377,334 European ancestry individuals	NA	8q12.3	NR	rs790564-C	0.729	1E-10		0.01762409	[0.012-0.023] unit decrease	NR [~ 10000000] (imputed)	N
1077	chr8	64608118	64608119	rs1149470	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	8q12.3	YTHDF3	rs1149470-T	0.239157	1E-9		0.0141404	[0.0096-0.0187] unit increase	Affymetrix [NR] (imputed)	N
1078	chr8	64626731	64626732	rs61666516	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8q12.3	NR	rs61666516-C	0.0122	7E-9	(LBP)	0.0422	NR unit increase	Illumina [1671387] (imputed)	N
1078	chr8	64626931	64626932	rs1217105	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Raw vegetable consumption	335,576 European ancestry individuals	NA	8q12.3	intergenic	rs1217105-?	NR	3E-10		0.0166466	[0.011-0.022] unit decrease	Affymetrix [25921788] (imputed)	N
1078	chr8	64626931	64626932	rs1217105	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fish- and plant-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	8q12.3	intergenic	rs1217105-?	NR	4E-12		0.0182021	[0.013-0.023] unit decrease	Affymetrix [25921788] (imputed)	N
1078	chr8	64632662	64632662	rs35341564	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	8q12.3		rs35341564-AT	NR	3E-8		0.0131	[0.0084-0.0178] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1078	chr8	64633424	64633425	rs1406491	33693791	Park S	2021-03-09	J Nutr	Observational or Genetically Predicted Higher Vegetable Intake and Kidney Function Impairment: An Integrated Population-Scale Cross-Sectional Analysis and Mendelian Randomization Study.	Vegetable consumption	337,128 European ancestry individuals	NA	8q12.3	CYP7B1	rs1406491-A	0.261	2E-8		0.012	[0.0081-0.0159] unit decrease	NR [NR] (imputed)	N
1078	chr8	64653460	64653461	rs67344323	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	8q12.3	YTHDF3	rs67344323-T	0.743768	2E-11		0.0145699	[0.01-0.019] unit increase	Affymetrix [NR] (imputed)	N
1078	chr8	64658275	64658276	rs28542151	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Cognitive traits (MTAG)	331,679 British ancestry individuals	NA	8q12.3		rs28542151-?	NR	1E-9				NR [7857346] (imputed)	N
1078	chr8	64661526	64661527	rs7834364	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	8q12.3	NR	rs7834364-G	0.255467	2E-12		0.057200808	[0.041-0.073] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1078	chr8	64662317	64662318	rs28549862	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	8q12.3	RP11-32K4.1, ENSG00000253762	rs28549862-A	NR	3E-8		5.555	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1078	chr8	64696605	64696606	rs1520919	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	8q12.3	Intergenic	rs1520919-G	0.7066	3E-8		0.0119	[0.0078-0.016] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1078	chr8	64700893	64700894	rs1520930	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Intake of total sugars	174,424 European ancestry individuals	NA	8q12.3	RP11-32K4.1	rs1520930-T	0.67	8E-6		0.79	[0.44-1.14] g/day increase	Affymetrix [10353649] (imputed)	N
1078	chr8	64702384	64702385	rs13264909	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	8q12.3	NR	rs13264909-?	NR	7E-11				Affymetrix [~ 8270000] (imputed)	N
1078	chr8	64702384	64702385	rs13264909	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	8q12.3		rs13264909-?	NR	8E-11				NR [~ 8900000] (imputed)	N
1078	chr8	64702384	64702385	rs13264909	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	8q12.3	NA	rs13264909-A	0.5654	4E-10		0.012	[0.0083-0.0157] unit increase	NR [~ 27400000] (imputed)	N
1078	chr8	64716468	64716469	rs890235	33169155	Bigdeli TB	2020-11-10	Schizophr Bull	Genome-Wide Association Studies of Schizophrenia and Bipolar Disorder in a Diverse Cohort of US Veterans.	Schizophrenia	44,794 European ancestry cases, 7,509 African American cases, 1,234 Latino cases, 112,777 European ancestry controls, 8,337 African American controls, 3,090 Latino controls	NA	8q12.3	YTHDF3	rs890235-G	NR	2E-8		1.05	[1.03-1.07]	Affymetrix [up to 49134253] (imputed)	N
1078	chr8	64716468	64716469	rs890235	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	8q12.3	NA	rs890235-A	0.5462	2E-9		0.0103	[0.007-0.0136] unit increase	NR [~ 27400000] (imputed)	N
1078	chr8	64720692	64720693	rs4737183	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	8q12.3		rs4737183-?	NR	1E-13				NR [~ 8900000] (imputed)	N
1079	chr8	64753445	64753446	rs1425598	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	8q12.3	NA	rs1425598-?		4E-10				Affymetrix, Illumina [NR] (imputed)	N
1079	chr8	64756656	64756657	rs4737188	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	8q12.3		rs4737188-T	NR	7E-11		0.014	[0.0099-0.0181] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
1079	chr8	64756656	64756657	rs4737188	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Triglycerides	429,011 European ancestry individuals	NA	8q12.3		rs4737188-A	0.53	2E-7		0.01	mmol/L increase	NR [NR] (imputed)	N
1079	chr8	64756656	64756657	rs4737188	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Sex hormone-binding globulin levels	389,354 European ancestry individuals	NA	8q12.3		rs4737188-A	0.53	7E-10		0.011	nmol/L decrease	NR [NR] (imputed)	N
1079	chr8	64756656	64756657	rs4737188	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	8q12.3		rs4737188-A	0.53	4E-8				NR [NR] (imputed)	N
1079	chr8	64756656	64756657	rs4737188	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	High density lipoprotein cholesterol levels	392,965 European ancestry individuals	NA	8q12.3		rs4737188-A	0.53	2E-10		0.012	mmol/L decrease	NR [NR] (imputed)	N
1079	chr8	64756656	64756657	rs4737188	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	8q12.3		rs4737188-A	0.53	3E-8		0.008	% increase	NR [NR] (imputed)	N
1079	chr8	64756656	64756657	rs4737188	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		8q12.3	YTHDF3	rs4737188-A	0.526114	2E-9		0.00831249	[0.0056-0.011] unit increase	Affymetrix [12370749]	N
1079	chr8	64779012	64779013	rs6982152	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	8q12.3	NR	rs6982152-C	0.763	4E-15		0.012229	[0.0092-0.0153] unit increase	NR [~ 9732723] (imputed)	N
1079	chr8	64779012	64779013	rs6982152	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	8q12.3	NR	rs6982152-?	NR	6E-7		4.983	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1079	chr8	64804803	64804804	rs13254613	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	8q12.3	YTHDF3	rs13254613-A	0.654054	2E-17		0.0125693	[0.0097-0.0155] unit decrease	Affymetrix [12370749]	N
1079	chr8	64825392	64825393	rs56288719	30306274	Shah RL	2018-10-10	Hum Genet	Genome-wide association studies for corneal and refractive astigmatism in UK Biobank demonstrate a shared role for myopia susceptibility loci.	Refractive astigmatism	88,005 European ancestry individuals		8q12.3	LOC286184	rs56288719-T	0.962	3E-6		0.036	[0.02-0.052] dioptres decrease	NR [5900115] (imputed)	N
1079	chr8	64849449	64849450	rs970908	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x short total sleep time interaction (2df test)	2,990 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,300 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, at least 11,842 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,350 European ancestry controls, 4,047 Hispanic/Latino controls	at least 220 African American short sleepers, 326 East Asian ancestry short sleepers, up to 5,288 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 1,292 East Asian ancestry controls, up to 20,844 European ancestry controls, 10,062 Hispanic controls	8q12.3	LINC01289	rs970908-?	NR	4E-13		0.008188	[0.0041-0.0122] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
1079	chr8	64849449	64849450	rs970908	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x short total sleep time interaction (2df test)	2,990 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,300 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, at least 11,842 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,350 European ancestry controls, 4,047 Hispanic/Latino controls	at least 220 African American short sleepers, 326 East Asian ancestry short sleepers, up to 5,288 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 1,292 East Asian ancestry controls, up to 20,844 European ancestry controls, 10,062 Hispanic controls	8q12.3	LINC01289	rs970908-?	NR	1E-8	(AA)	0.01927	[0.0067-0.0319] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
1080	chr8	64906618	64906619	rs9298078	31645637	Nagtegaal AP	2019-10-23	Sci Rep	Genome-wide association meta-analysis identifies five novel loci for age-related hearing impairment.	Age-related hearing impairment (low/mid frequency)	9,675 European ancestry individuals	3,319 European ancestry individuals, 6,909 Hispanic individuals, 735 African American individuals	8q12.3	NR	rs9298078-T	0.05	1E-6	(EA)	0.14	[0.083-0.197] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1080	chr8	64906618	64906619	rs9298078	31645637	Nagtegaal AP	2019-10-23	Sci Rep	Genome-wide association meta-analysis identifies five novel loci for age-related hearing impairment.	Age-related hearing impairment	9,675 European ancestry individuals	3,319 European ancestry individuals, 6,909 Hispanic individuals, 735 African American individuals	8q12.3	NR	rs9298078-T	0.05	1E-6	(EA)	0.142	[0.085-0.199] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1080	chr8	64912020	64912021	rs3850736	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	8q12.3	NR	rs3850736-G	0.474	6E-14		0.019128447	[0.014-0.024] unit increase	NR [~ 10000000] (imputed)	N
1080	chr8	64921156	64921157	rs3844072	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	8q12.3		rs3844072-G	0.515	2E-13		0.008	[0.006-0.01] unit decrease	NR [NR] (imputed)	N
1080	chr8	64956881	64956882	rs2356369	31358974	Evangelou E	2019-07-29	Nat Hum Behav	New alcohol-related genes suggest shared genetic mechanisms with neuropsychiatric disorders.	Alcohol consumption	480,842 European ancestry individuals	NA	8q12.3	RP11-32K4.1, BHLHE22	rs2356369-T	0.52	2E-9		0.006	[0.004-0.008] unit decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1080	chr8	64960854	64960855	rs1838420	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Problematic alcohol use (MTAG)	972,915 European ancestry individuals	NA	8q12.3	NR	rs1838420-T	0.4825	4E-10		0.012794922	[0.0088-0.0168] unit increase	Affymetrix [10613246] (imputed)	N
1080	chr8	64960854	64960855	rs1838420	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol consumption (drinks per week) (MTAG)	972,915 European ancestry individuals	NA	8q12.3	NR	rs1838420-T	0.489	4E-9		0.010147839	[0.0068-0.0135] unit increase	Affymetrix [NR] (imputed)	N
1080	chr8	64981658	64981659	rs7841320	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	8q12.3	NR	rs7841320-A	0.478	8E-18		0.00926718	[0.0072-0.0114] unit increase	NR [9732723] (imputed)	N
1080	chr8	65002953	65002954	rs12544687	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter alcoholic beverage consumption	336,448 European ancestry individuals	39,924 European ancestry individuals	8q12.3	LOC102724623	rs12544687-T	0.4511	2E-6		0.0049	[0.0029-0.0069] unit increase	Affymetrix [~ 7740000] (imputed)	N
1081	chr8	65015658	65015659	rs34054660	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	8q12.3	YTHDF3, BHLHE22	rs34054660-A	0.5747	4E-8		1.0252126		Affymetrix [11880941] (imputed)	N
1081	chr8	65073604	65073605	rs12545053	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking initiation	842,717 European ancestry individuals	NA	8q12.3	LOC102724623	rs12545053-G		4E-10		1.022	[NR]	Affymetrix [up to 79000000] (imputed)	N
1081	chr8	65073604	65073605	rs12545053	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	8q12.3	NR	rs12545053-G	0.396	2E-8		0.00833618	[0.0054-0.0113] unit decrease	NR [9732723] (imputed)	N
1081	chr8	65084136	65084137	rs79725523	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Abstraction and mental flexibility	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	8q12.3	intergenic	rs79725523-G	NR	6E-6		0.30541992	[0.17-0.44] unit decrease	Illumina [> 6200000] (imputed)	N
1081	chr8	65088502	65088503	rs1542652	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	8q12.3	NR	rs1542652-A	0.057654	1E-8		0.08666417	[0.057-0.116] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1082	chr8	65169016	65169017	rs10504374	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	8q12.3		rs10504374-C	0.402337	7E-12		0.019122	[0.014-0.025] unit decrease	Illumina [13479924] (imputed)	N
1082	chr8	65191811	65191812	rs6994670	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	8q12.3	MIR124-2, LOC286184, LOC401463, BHLHE22, CYP7B1	rs6994670-A	0.966816196278808	2E-11		0.05354122	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1082	chr8	65192450	65192451	rs11787111	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	8q12.3	LOC100130155	rs11787111-G	0.969	4E-6	(EA)	0.053	[0.031-0.076] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1082	chr8	65192450	65192451	rs11787111	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	8q12.3	LOC100130155	rs11787111-G	0.968	3E-6		0.052	[0.03-0.074] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1083	chr8	65282596	65282597	rs298207	29160301	Fabbri C	2017-11-21	Pharmacogenomics J	New insights into the pharmacogenomics of antidepressant response from the GENDEP and STAR*D studies: rare variant analysis and high-density imputation.	Response to antidepressants (symptom improvement)	2,145 European ancestry individuals	NA	8q12.3	MIR124-2, MIR124-2HG	rs298207-?	NR	5E-6		0.0651	NR unit increase	Affymetrix, Illumina [7062950] (imputed)	N
1083	chr8	65303534	65303535	rs298182	25648963	Debette S	2014-11-25	Biol Psychiatry	Genome-wide studies of verbal declarative memory in nondemented older people: the Cohorts for Heart and Aging Research in Genomic Epidemiology consortium.	Verbal declarative memory	Up to 27,337 European ancestry individuals, up to 472 Korkulan individuals, up to 1,267 Erasmus Rucphen Family individuals	Up to 10,617 European ancestry individuals, up to 3,811 African American individuals	8q12.3	BHLHB5, CYP7B1	rs298182-A	0.09	3E-6	(CERAD-dr)	0.4599	[0.27-0.65] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1083	chr8	65310835	65310836	rs2612614	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls	NA	8q12.3	NR	rs2612614-?	NR	2E-8		1.11		Affymetrix, Illumina [9938587] (imputed)	N
1083	chr8	65317668	65317669	rs148415900	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	8q12.3	NR	rs148415900-?	NR	4E-10		1.0848105	[1.06-1.11]	Affymetrix, Illumina [12447948] (imputed)	N
1083	chr8	65387466	65387467	rs7836768	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8q12.3	CYP7B1	rs7836768-?	NR	4E-6	(TAG 58:8)	0.15787019	[0.091-0.225] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1083	chr8	65396026	65396027	rs958050	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	8q12.3		rs958050-A	NR	2E-10		0.0095	[0.0066-0.0124] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1084	chr8	65446637	65446638	rs6992228	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	8q12.3	NR	rs6992228-C	0.1967	1E-8				NR [9056863] (imputed)	N
1084	chr8	65453505	65453506	rs7831241	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	8q12.3		rs7831241-G	0.26	1E-8		5.67	z score increase	Affymetrix [9061022] (imputed)	N
1084	chr8	65463441	65463442	rs6996198	32339537	Roberts V	2020-04-24	J Invest Dermatol	Genome wide association study identifies genetic associations with perceived age.	Youthful appearance (self-reported)	423,992 European ancestry individuals	NA	8q12.3	RP11-21C4.1	rs6996198-C	0.844004	7E-11		1.039714	NR	Affymetrix [~ 9600000] (imputed)	N
1084	chr8	65481946	65481947	rs62519827	30271922	Clifton EAD	2018-05-03	Commun Biol	Genome-wide association study for risk taking propensity indicates shared pathways with body mass index.	Self-reported risk-taking behaviour	113,882 European ancestry cases, 322,354 European ancestry controls	NA	8q12.3	CYP7B1	rs62519827-T	0.89	6E-11		1.042	[1.029-1.055]	Affymetrix [7736308] (imputed)	N
1084	chr8	65481946	65481947	rs62519827	30181555	Strawbridge RJ	2018-09-04	Transl Psychiatry	Genetics of self-reported risk-taking behaviour, trans-ethnic consistency and relevance to brain gene expression.	Self-reported risk-taking behaviour	83,677 British ancestry cases, 244,662 British ancestry controls	2,764 South Asian ancestry cases, 3,139 African Caribbean ancestry cases, 16,169 European ancestry cases, 3,866 mixed ancestry cases, 4,267 South Asian ancestry controls, 4,341 African Caribbean ancestry controls, 31,814 European ancestry controls, 5,988 mixed ancestry controls	8q12.3	NR	rs62519827-T	0.89	8E-10		0.051	[0.035-0.067] unit increase	Affymetrix [NR] (imputed)	N
1084	chr8	65487772	65487773	rs12546399	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Automobile speeding propensity	404,291 European ancestry individuals	NA	8q12.3	BHLHE22	rs12546399-T	0.1107	1E-9		0.021878503	[0.015-0.029] unit increase	Affymetrix [11514463] (imputed)	N
1084	chr8	65493428	65493429	rs7016250	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals, 21,077 African American individuals, 33,689 South Asian ancestry individuals, 4,586 Hispanic individuals	354,096 European ancestry individuals, 63,282 African American individuals, 4,792 East Asian ancestry individuals, 22,802 Hispanic individuals, 2,695 Native American ancestry individuals	8q12.3		rs7016250-T	0.684	3E-8		0.12030821	[0.074-0.166] mmHg decrease	Affymetrix, Illumina [247314] (imputed)	N
1084	chr8	65497572	65497573	rs62519839	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	8q12.3	BHLHE22	rs62519839-T	0.112	6E-18		0.0161	[0.012-0.02] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
1084	chr8	65497572	65497573	rs62519839	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	8q12.3	BHLHE22	rs62519839-T	0.1121	3E-8		0.01704201	[0.011-0.023] unit decrease	Illumina [9339358] (imputed)	N
1084	chr8	65499191	65499192	rs2280870	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	8q12.3		rs2280870-?	NR	9E-9				NR [~ 8900000] (imputed)	N
1084	chr8	65501504	65501505	rs62519841	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	8q12.3	CYP7B1	rs62519841-A	0.102	2E-16		0.032263283	[0.025-0.04] unit decrease	Affymetrix [11515109] (imputed)	N
1084	chr8	65505207	65505208	rs77576509	33075057	Li X	2020-10-19	PLoS Genet	Automated feature extraction from population wearable device data identified novel loci associated with sleep and circadian rhythms.	Sleep start time	90,515 individuals	NA	8q12.3	CYP7B1	rs77576509-C	NR	1E-8		0.496	[0.33-0.67] unit decrease	NR [11024754] (imputed)	N
1084	chr8	65508414	65508415	rs189335278	30181555	Strawbridge RJ	2018-09-04	Transl Psychiatry	Genetics of self-reported risk-taking behaviour, trans-ethnic consistency and relevance to brain gene expression.	Self-reported risk-taking behaviour	83,677 British ancestry cases, 244,662 British ancestry controls	2,764 South Asian ancestry cases, 3,139 African Caribbean ancestry cases, 16,169 European ancestry cases, 3,866 mixed ancestry cases, 4,267 South Asian ancestry controls, 4,341 African Caribbean ancestry controls, 31,814 European ancestry controls, 5,988 mixed ancestry controls	8q12.3	CYP7B1	rs189335278-A	0.11	8E-11		0.054	[0.038-0.07] unit decrease	Affymetrix [NR] (imputed)	N
1085	chr8	65549341	65549342	rs7841297	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	8q12.3	NR	rs7841297-C	0.84993761919202	2E-11		0.008626597	[0.0061-0.0111] unit increase	NR [NR]	N
1085	chr8	65549341	65549342	rs7841297	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	8q12.3	NR	rs7841297-C	0.84993761919202	4E-11		0.01441694	[0.01-0.019] unit increase	NR [NR]	N
1085	chr8	65549341	65549342	rs7841297	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	8q12.3	NR	rs7841297-C	0.84993761919202	5E-11		0.009173213	[0.0064-0.0119] unit increase	NR [NR]	N
1085	chr8	65549341	65549342	rs7841297	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	8q12.3		rs7841297-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1085	chr8	65562018	65562019	rs7837935	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	8q12.3		rs7837935-?	NR	2E-11		0.0274	unit decrease	NR [NR]	N
1085	chr8	65562018	65562019	rs7837935	30718901	Howard DM	2019-02-04	Nat Neurosci	Genome-wide meta-analysis of depression identifies 102 independent variants and highlights the importance of the prefrontal brain regions.	Depression	118,811 European ancestry cases, 327,427 European ancestry controls, 127,552 cases, 233,763 controls	414,055 European ancestry cases, 892,299 European ancestry controls	8q12.3	NR	rs7837935-G	0.8478	1E-13		1.0224949	[1.02-1.03]	NR [8098588] (imputed)	N
1085	chr8	65562018	65562019	rs7837935	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	8q12.3	BHLHE22	rs7837935-T	0.159647	2E-8		5.61	z score decrease	NR [10847151] (imputed)	N
1085	chr8	65564427	65564428	rs4350019	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on highest math class (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	8q12.3		rs4350019-?	NR	3E-8				NR [NR]	N
1085	chr8	65564427	65564428	rs4350019	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on cognitive performance (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	8q12.3		rs4350019-?	NR	3E-8				NR [NR]	N
1085	chr8	65564427	65564428	rs4350019	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on Townsend deprivation index (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	8q12.3		rs4350019-?	NR	4E-8				NR [NR]	N
1085	chr8	65568213	65568214	rs76288073	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	8q12.3	NR	rs76288073-T	NR	7E-9		5.793	z score decrease	Affymetrix [10847151] (imputed)	N
1085	chr8	65613912	65613913	rs72656469	30420678	Tasa T	2018-11-12	Eur J Hum Genet	Genetic variation in the Estonian population: pharmacogenomics study of adverse drug effects using electronic health records.	Adverse response to drug	16,226 European ancestry individuals	NA	8q12.3	CYP7B1	rs72656469-T	0.019	3E-7	(Fluoroquinolones [J01MA])	3.38		Illumina [16500000] (imputed)	N
1085	chr8	65640259	65640260	rs10808739	22174851	Lingappa JR	2011-12-12	PLoS One	Genomewide association study for determinants of HIV-1 acquisition and viral set point in HIV-1 serodiscordant couples with quantified virus exposure.	HIV-1 susceptibility	496 African ancestry cases and 302 African ancestry exposed controls from serodiscordant couples	NA	8q12.3	CYP7B1	rs10808739-?	NR	1E-6				Illumina [990115]	N
1086	chr8	65681850	65681851	rs13276608	29489655	Liu X	2018-03-01	Medicine (Baltimore)	Genome-wide association study of maternal genetic effects and parent-of-origin effects on food allergy.	Food allergy (maternal genetic effects)	588 European ancestry complete and incomplete trios	NA	8q12.3	CYP7B1	rs13276608-?	NR	9E-6				Illumina [NR]	N
1086	chr8	65730206	65730207	rs6472155	23393555	Jensen RA	2013-02-05	PLoS One	Genome-wide association study of retinopathy in individuals without diabetes.	Retinopathy in non-diabetics	19,411 European ancestry individuals	NA	8q12.3	CYP7B1	rs6472155-A	0.51	4E-6		0.23	[0.13-0.33] unit decrease	Illumina [2675979] (imputed)	N
1087	chr8	65799323	65799324	rs189224538	33048379	Richard MA	2020-10-13	Cancer	Genetic variation in the body mass index of adult survivors of childhood acute lymphoblastic leukemia: A report from the Childhood Cancer Survivor Study and the St. Jude Lifetime Cohort.	BMI in adult survivors of childhood acute lymphoblastic leukemia	1,458 European ancestry individuals	787 individuals	8q12.3	NR	rs189224538-G	NR	2E-6		4.9	[2.94-6.86] unit increase	Illumina [> 9000000] (imputed)	N
1087	chr8	65882353	65882354	rs113451833	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 157,769 European ancestry controls	NA	8q12.3	NR	rs113451833-?	NR	3E-7		0.0702	[0.043-0.097] unit increase	Affymetrix, Illumina [12923718] (imputed)	N
1087	chr8	65889034	65889035	rs78706544	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MMP7	5,359 Icelandic ancestry individuals	NA	8q12.3		rs78706544-G	0.02634	6E-12		0.0744894	[0.053-0.096] unit increase	Illumina [7506463] (imputed)	N
1088	chr8	65999962	65999963	rs2980003	23400010	Del-Aguila JL	2013-02-12	Pharmacogenomics J	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NA	8q12.3	CYP7B1	rs2980003-T	0.27	5E-6	(EA-triglyceride response)	22.07	[12.6-31.54] mg/dL increase	Affymetrix, Illumina [> 2000000] (imputed)	N
1088	chr8	66013669	66013670	rs187088286	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	8q13.1	NR	rs187088286-A	0.0	5E-6		2.28	[1.93-2.63]	Illumina [8468885] (imputed)	N
1089	chr8	66102312	66102313	rs13253048	31466081	Luo A	2019-08-29	Neuropsychopharmacology	Epigenetic aging is accelerated in alcohol use disorder and regulated by genetic variation in APOL2.	Epigenetic age acceleration in alcohol use disorder	154 European ancestry individuals, 156 African American individuals	NA	8q13.1	LINC00251	rs13253048-?	NR	9E-7	(EA)			Illumina [up to 666531]	N
1089	chr8	66134453	66134454	rs76115211	26911590	Mullin BH	2016-02-25	BMC Genomics	Genome-wide association study using family-based cohorts identifies the WLS and CCDC170/ESR1 loci as associated with bone mineral density.	Bone mineral density (spine)	1,042 Northern European ancestry individuals	5,654 Northern European ancestry individuals	8q13.1	LINC00251	rs76115211-A	0.07	3E-7		0.34	[0.2-0.48] g/cm2 decrease	Illumina [NR] (imputed)	N
1089	chr8	66174549	66174550	rs1514506	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	8q13.1	NR	rs1514506-?	NR	1E-6		4.897	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1090	chr8	66247788	66247789	rs574092955	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	8q13.1	RP11-678D18.1	rs574092955-A	0.0014	3E-7		1.135	[0.7-1.57] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1090	chr8	66247788	66247789	rs574092955	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference	1,254 whole genome sequenced European ancestry individuals, 3,074 whole genome sequenced individuals, 29,716 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 701 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,050 Mylopotamos (founder/genetic isolate) individuals, 883 Pomak (founder/genetic isolate) individuals	205,909 European ancestry individuals	8q13.1	RP11-678D18.1	rs574092955-A	0.0014	9E-7		1.0907	[0.65-1.53] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1090	chr8	66304328	66304329	rs7011390	31533690	Orlova E	2019-09-18	BMC Oral Health	Pilot GWAS of caries in African-Americans shows genetic heterogeneity.	Dental caries (decayed, missing and filled tooth surfaces)	109 African American adults	NA	8q13.1	NR	rs7011390-?		3E-6		12.96	[7.81-18.11] unit increase	Illumina [~ 4900000] (imputed)	N
1091	chr8	66333627	66333628	rs4737732	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Stem cell growth factor beta levels	3,682 Finnish ancestry individuals	NA	8q13.1	NR	rs4737732-G		5E-6		0.1147	[0.065-0.164] SD units increase	NR [10700000] (imputed)	N
1091	chr8	66415213	66415214	rs7815967	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 19)	2,187 European ancestry individuals	NA	8q13.1	NR	rs7815967-T	0.1169	1E-6		0.2276	[0.14-0.32] unit decrease	Illumina [10677593] (imputed)	N
1091	chr8	66434564	66434565	rs7842514	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Stem cell growth factor beta levels	3,682 Finnish ancestry individuals	NA	8q13.1	NR	rs7842514-G		6E-6		0.1309	[0.074-0.188] SD units decrease	NR [10700000] (imputed)	N
1091	chr8	66440592	66440593	rs13276212	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	8q13.1	NR	rs13276212-T	NR	4E-8		5.471	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1092	chr8	66463477	66463478	rs6981992	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	8q13.1	ARMC1	rs6981992-A	0.489	8E-6	(Sleep duration )	0.02	[NR] min/d increase	Illumina [899892]	N
1092	chr8	66470961	66470962	rs6991838	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	8q13.1	NR	rs6991838-?	NR	3E-6		4.693	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1092	chr8	66470961	66470962	rs6991838	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	8q13.1	CTD-3025N20.2	rs6991838-A	NR	1E-8		0.017300356	[0.011-0.023] unit increase	Affymetrix [NR]	N
1092	chr8	66472178	66472179	rs11786598	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	8q13.1	Intergenic	rs11786598-A	0.4634	1E-9	(MTAG)	0.014	[0.0095-0.0185] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1092	chr8	66474196	66474197	rs6472207	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8q13.1	MTFR1	rs6472207-?	NR	7E-6	(PC 38:2)	0.17611277	[0.099-0.253] unit increase	Affymetrix [at least 2500000] (imputed)	N
1092	chr8	66474729	66474730	rs6472208	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	8q13.1	Intergenic	rs6472208-T	0.4065	1E-9	(MTAG)	0.0102	[0.0069-0.0135] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1092	chr8	66474729	66474730	rs6472208	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	8q13.1		rs6472208-T	0.4033	2E-10		0.0091	[0.0064-0.0118] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1092	chr8	66474729	66474730	rs6472208	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	8q13.1	Intergenic	rs6472208-T	0.4033	8E-13	(MTAG)	0.0096	[0.0071-0.0121] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1092	chr8	66511274	66511275	rs60058315	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	8q13.1		rs60058315-A	0.3286	9E-9	(conditional-joint)	0.0086	[0.0057-0.0115] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1093	chr8	66624231	66624232	rs10504390	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	8q13.1	NR	rs10504390-G	0.0804795064530485	2E-7	(IGP54)	0.2877	[0.18-0.4] unit decrease	Illumina [~ 2500000] (imputed)	N
1093	chr8	66624231	66624232	rs10504390	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	8q13.1	NR	rs10504390-G	0.0804795064530485	1E-7	(IGP14)	0.2953	[0.19-0.4] unit decrease	Illumina [~ 2500000] (imputed)	N
1093	chr8	66624231	66624232	rs10504390	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	8q13.1	NR	rs10504390-G	0.0802926317898486	8E-6	(IGP68)	0.2503	[0.14-0.36] unit decrease	Illumina [~ 2500000] (imputed)	N
1093	chr8	66652456	66652457	rs72666543	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8q13.1	NR	rs72666543-A	0.01045	2E-8	(ALDH16A1)	0.03334	NR unit increase	Illumina [1671387] (imputed)	N
1093	chr8	66661073	66661074	rs13280521	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	8q13.1		rs13280521-G	0.464	1E-8		0.007	[0.005-0.009] unit decrease	NR [NR] (imputed)	N
1093	chr8	66666141	66666142	rs34042475	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	8q13.1	NR	rs34042475-G	0.445	6E-10		0.00674778	[0.0046-0.0089] unit increase	NR [9732723] (imputed)	N
1093	chr8	66692010	66692011	rs11557049	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	8q13.1		rs11557049-T	NR	7E-15		0.0303	[0.023-0.038] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
1093	chr8	66692010	66692011	rs11557049	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	8q13.1	NR	rs11557049-T	NR	9E-10		0.0296	[0.02-0.039] unit increase	Affymetrix [9000000] (imputed)	N
1093	chr8	66692010	66692011	rs11557049	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	8q13.1	NR	rs11557049-T	NR	3E-15		0.0382	[0.029-0.048] unit decrease	Affymetrix [9000000] (imputed)	N
1093	chr8	66692010	66692011	rs11557049	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	8q13.1	NR	rs11557049-T	NR	2E-11		0.0325	[0.023-0.042] unit increase	Affymetrix [9000000] (imputed)	N
1093	chr8	66692010	66692011	rs11557049	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	8q13.1	NR	rs11557049-T	NR	1E-14		0.0374	[0.028-0.047] unit increase	Affymetrix [9000000] (imputed)	N
1094	chr8	66738895	66738896	rs6984402	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8q13.1	MTFR1	rs6984402-?	NR	8E-6	(SM 18:0)	0.21458018	[0.12-0.31] unit increase	Affymetrix [at least 2500000] (imputed)	N
1094	chr8	66792631	66792632	rs6472232	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	8q13.1		rs6472232-G	NR	2E-14		0.0174	[0.013-0.022] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
1094	chr8	66792631	66792632	rs6472232	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	8q13.1		rs6472232-G	0.3515	4E-11		0.0151683	[0.011-0.019] unit increase	Affymetrix [93095623] (imputed)	N
1094	chr8	66792631	66792632	rs6472232	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q13.1	NR	rs6472232-G	0.324905	1E-16				Affymetrix, Illumina [24246363] (imputed)	N
1094	chr8	66792631	66792632	rs6472232	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	8q13.1	NR	rs6472232-G	0.354316	4E-15		0.014987	[0.011-0.019] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
1094	chr8	66795197	66795198	rs56080166	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	8q13.1		rs56080166-A	0.346133	6E-12		0.015971234	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1094	chr8	66795197	66795198	rs56080166	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	8q13.1		rs56080166-A	0.346122	1E-14		0.017951379	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1094	chr8	66822029	66822030	rs6472235	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	8q13.1	intergenic	rs6472235-G	0.3457	6E-12		0.02646344	[0.019-0.034] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1094	chr8	66822029	66822030	rs6472235	23049088	Meng W	2012-10-09	Invest Ophthalmol Vis Sci	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		8q13.1	intergenic	rs6472235-?	0.617	1E-7			[NR]	Affymetrix, Illumina [152234]	N
1094	chr8	66838469	66838470	rs6999945	29682794	Szekely E	2018-04-22	Genet Epidemiol	Genetic associations with childhood brain growth, defined in two longitudinal cohorts.	Right lateral prefrontal cortical growth	581 European ancestry individuals, 31 African American individuals, 8 Asian American individuals, 15 admixed individuals, 80 other ancestries individuals	NA	8q13.1	PDE7A, DNAJC5B	rs6999945-?	NR	7E-6				Illumina [at least 653030]	N
1094	chr8	66844742	66844743	rs6994725	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	8q13.1	NR	rs6994725-A	0.345567	3E-12		0.013507	[0.0097-0.0173] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1094	chr8	66844742	66844743	rs6994725	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	8q13.1		rs6994725-?	NR	1E-13				NR [~ 8900000] (imputed)	N
1095	chr8	66849616	66849617	rs34178379	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	8q13.1	NR	rs34178379-G	0.061531	3E-10		0.024007	[0.017-0.031] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1095	chr8	66851730	66851731	rs4601292	22174851	Lingappa JR	2011-12-12	PLoS One	Genomewide association study for determinants of HIV-1 acquisition and viral set point in HIV-1 serodiscordant couples with quantified virus exposure.	HIV-1 viral setpoint	496 African ancestry cases	NA	8q13.1	DNAJC5B	rs4601292-?	NR	6E-6				Illumina [990115]	N
1095	chr8	66856145	66856146	rs4129057	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8q13.1	PDE7A	rs4129057-?	NR	8E-6	(SM 18:0)	0.17166772	[0.096-0.247] unit increase	Affymetrix [at least 2500000] (imputed)	N
1095	chr8	66857208	66857209	rs3901084	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8q13.1	PDE7A	rs3901084-?	NR	7E-6	(PC 38:2)	0.19099173	[0.11-0.27] unit increase	Affymetrix [at least 2500000] (imputed)	N
1095	chr8	66861737	66861738	rs28407694	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	8q13.1		rs28407694-T	NR	1E-17		0.0192	[0.015-0.024] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
1095	chr8	66864337	66864338	rs150435906	26220383	Jang HW	2015-06-02	Epilepsy Res	GWAS identifies two susceptibility loci for lamotrigine-induced skin rash in patients with epilepsy.	Epilepsy and lamotrigine-induced maculopapular eruptions	34 Korean ancestry cases, 1,080 Korean ancestry healthy controls	NA	8q13.1	DNAJC5B, PDE7A	rs150435906-?	0.01	6E-7		8.6	[NR]	Affymetrix [4893794] (imputed)	N
1095	chr8	66871898	66871899	rs60148718	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q13.1	NR	rs60148718-A	0.316985	3E-22				Affymetrix, Illumina [24588908] (imputed)	N
1095	chr8	66871898	66871899	rs60148718	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	8q13.1	NR	rs60148718-A	0.354831	3E-21		0.018433	[0.015-0.022] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1095	chr8	66882849	66882850	rs11994927	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8q13.1	PDE7A	rs11994927-?	NR	4E-6	(SM 24:1)	0.17371556	[0.1-0.25] unit increase	Affymetrix [at least 2500000] (imputed)	N
1095	chr8	66886455	66886456	rs59282311	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	8q13.1		rs59282311-G	NR	3E-11		0.0129	[0.0092-0.0166] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
1095	chr8	66888885	66888886	rs61709988	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	8q13.1		rs61709988-C	0.351097	2E-22		0.023024794	[0.018-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
1095	chr8	66898261	66898262	rs6989099	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	8q13.1		rs6989099-C	NR	9E-14		0.0166	[0.012-0.021] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1095	chr8	66898261	66898262	rs6989099	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q13.1	NR	rs6989099-C	0.296187	2E-14				Affymetrix, Illumina [19872809] (imputed)	N
1095	chr8	66898261	66898262	rs6989099	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	8q13.1	NR	rs6989099-C	0.317295	9E-17		0.017763	[0.014-0.022] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
1095	chr8	66899587	66899587	rs58248207	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 1, breadth of lateral portion of upper face)	2,187 European ancestry individuals	NA	8q13.1	NR	rs58248207-AT	0.1512	2E-6		0.2018	[0.12-0.29] unit increase	Illumina [10677593] (imputed)	N
1095	chr8	66910530	66910531	rs6472241	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	8q13.1		rs6472241-?	NR	6E-12				NR [~ 8900000] (imputed)	N
1095	chr8	66920723	66920724	rs4355757	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	8q13.1		rs4355757-?	NR	7E-19				NR [~ 8900000] (imputed)	N
1095	chr8	66922553	66922569	rs143175787	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	8q13.1		rs143175787-G	0.313085	3E-18		0.021283552	[0.016-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1095	chr8	66922553	66922569	rs143175787	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	8q13.1		rs143175787-G	0.313123	7E-14		0.017918408	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1095	chr8	66922553	66922569	rs143175787	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	8q13.1		rs143175787-G	0.313118	1E-15		0.0191483	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1095	chr8	66926422	66926423	rs11995702	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	8q13.1	intergenic	rs11995702-G	0.3221	3E-9		0.02323622	[0.016-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1095	chr8	66926427	66926428	rs11995704	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q13.1	NR	rs11995704-G	0.282981	2E-21				Affymetrix, Illumina [20825802] (imputed)	N
1095	chr8	66926427	66926428	rs11995704	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	8q13.1	NR	rs11995704-G	0.315611	8E-19		0.018339	[0.014-0.022] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
1095	chr8	66934901	66934902	rs17398234	30367059	Teumer A	2018-10-26	Nat Commun	Genome-wide analyses identify a role for SLC17A4 and AADAT in thyroid hormone regulation.	Thyroid stimulating hormone levels	54,288 European ancestry individuals	up to 22,383 European ancestry individuals	8q13.1	DNAJC5B	rs17398234-T	0.97	1E-7		0.1	unit decrease (discovery)	Affymetrix, Illumina [8048941] (imputed)	N
1095	chr8	66948382	66948383	rs17398736	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	8q13.1		rs17398736-G	NR	2E-11		0.0186	[0.013-0.024] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
1095	chr8	66952440	66952441	rs7832776	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	8q13.1		rs7832776-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1095	chr8	66955436	66955437	rs2357667	26584805	Dorajoo R	2015-11-19	Genes Nutr	A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.	Plasma omega-3 polyunsaturated fatty acid levels (docosahexaenoic acid)	717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls	NA	8q13.1	NR	rs2357667-T	0.0631	3E-6		0.1983	[0.12-0.28] unit decrease	Illumina [up to 1980188] (imputed)	N
1095	chr8	66960323	66960324	rs7011042	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8q13.1	TRIM55	rs7011042-?	NR	9E-7	(PC 38:2)	0.2293978	[0.14-0.32] unit increase	Affymetrix [at least 2500000] (imputed)	N
1095	chr8	66974251	66974252	rs13279522	22666496	Shiffman D	2012-05-30	PLoS One	Genome-wide study of gene variants associated with differential cardiovascular event reduction by pravastatin therapy.	Coronary heart disease event reduction (statin therapy interaction)	682 European, African American, Hispanic, Asian, Pacific Islander and other ancestry cases with events, 383 cases with events	29 European, African American, Hispanic, Asian, Pacific Islander and other ancestry cases with events, 2,398 European, African American, Hispanic, Asian, Pacific Islander and other ancestry cases without events, 729 cases with events, 9,563 cases without events	8q13.1	DNAJC5B, TRIM55, CRH	rs13279522-?	NR	5E-7		1.59	[1.33-1.92]	Illumina [~ 1400000]	N
1096	chr8	67052568	67052569	rs7835340	29317602	Hall LS	2018-01-10	Transl Psychiatry	Genome-wide meta-analyses of stratified depression in Generation Scotland and UK Biobank.	Recurrent major depressive disorder	7,345 European ancestry female cases, 32,211 European ancestry female controls	NA	8q13.1	TRIM55	rs7835340-A	NR	3E-6		0.09	[0.051-0.129] unit increase	Affymetrix, Illumina [7105178] (imputed)	N
1097	chr8	67117532	67117533	rs148113112	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	UBA11963 sp002362595 abundance in stool	5,959 Finnish ancestry individuals	NA	8q13.1		rs148113112-T	0.0109927	5E-8		0.215203	[0.14-0.29] unit decrease	Illumina [7980478] (imputed)	N
1097	chr8	67117532	67117533	rs148113112	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	UBA11963 abundance in stool	5,959 Finnish ancestry individuals	NA	8q13.1		rs148113112-T	0.0109927	4E-8		0.235643	[0.15-0.32] unit decrease	Illumina [7980478] (imputed)	N
1097	chr8	67171046	67171047	rs74193350	33232274	Mohammadnejad A	2020-11-24	Aging (Albany NY)	Generalized correlation coefficient for genome-wide association analysis of cognitive ability in twins.	Cognitive function (generalized correlation coefficient)	278 Chinese ancestry dizygotic twins	NA	8q13.1	NR	rs74193350-?	NR	1E-6			[NR]	Illumina [5432814] (imputed)	N
1097	chr8	67194170	67194171	rs12334877	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	8q13.1	NA	rs12334877-A	0.1913	2E-11		0.0144	[0.01-0.019] unit decrease	NR [~ 27400000] (imputed)	N
1097	chr8	67194709	67194710	rs10092723	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	8q13.1	NA	rs10092723-A	0.2494	1E-11		0.0133	[0.0094-0.0172] unit decrease	NR [~ 27400000] (imputed)	N
1097	chr8	67203654	67203655	rs11349539	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	8q13.1		rs11349539-T	NR	2E-8		0.0131	[0.0086-0.0176] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1097	chr8	67205240	67205241	rs11780222	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	8q13.1	NR	rs11780222-?	NR	3E-11				Affymetrix [~ 8270000] (imputed)	N
1097	chr8	67205240	67205241	rs11780222	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	8q13.1		rs11780222-?	NR	7E-12				NR [~ 8900000] (imputed)	N
1097	chr8	67209546	67209548	rs199640972	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	8q13.1		rs199640972-C	NR	5E-11		0.0176	[0.012-0.023] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1097	chr8	67209547	67209548	rs72652703	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		8q13.1	CRH	rs72652703-T	0.744433	3E-10		0.00992488	[0.0068-0.013] unit increase	Affymetrix [12370749]	N
1098	chr8	67254722	67254723	rs10092482	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	8q13.1	LOC100505676, RRS1, ADHFE1, C8orf46	rs10092482-T	0.178	7E-6		1.06577	[1.04-1.09]	NR [9372253] (imputed)	N
1098	chr8	67254722	67254723	rs10092482	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar I disorder	14,879 European ancestry cases, 31,358 European ancestry controls	NA	8q13.1	LOC100505676, RRS1, ADHFE1, C8orf46	rs10092482-T	0.178	2E-7		1.1055		NR [9372253] (imputed)	N
1098	chr8	67336381	67336382	rs12541098	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8q13.1	NR	rs12541098-T	0.3728	1E-9	(ADHFE1)	0.008299	NR unit increase	Illumina [1671387] (imputed)	N
1098	chr8	67341382	67341383	rs765609566	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Gamma glutamyl transferase levels	437,651 European ancestry individuals	NA	8q13.1		rs765609566-?	NR	2E-8		1.3194	[0.82-1.82] unit decrease	NR [9800000] (imputed)	N
1098	chr8	67360724	67360725	rs1030420	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	8q13.1	ADHFE1	rs1030420-T	0.19	1E-11	(X-04499--3,4-dihydroxybutyrate)	0.022	[0.016-0.028] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
1099	chr8	67381267	67381268	rs10112574	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite ratios	Up to 5,591 European ancestry individuals	Up to 1,767 European ancestry individuals	8q13.1	ADHFE1	rs10112574-A	0.2	3E-14	(X-04499--3,4-dihydroxybutyrate/C-glycosyltryptophan)	0.025	[0.019-0.031] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
1099	chr8	67446009	67446010	rs16932958	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	8q13.1	NR	rs16932958-?	NR	1E-9				Affymetrix [NR]	N
1099	chr8	67457295	67457296	rs140121875	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	8q13.1		rs140121875-A	NR	5E-9		0.0426	[0.028-0.057] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1099	chr8	67494884	67494885	rs150540391	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	8q13.1		rs150540391-?	NR	4E-12				NR [~ 8900000] (imputed)	N
1101	chr8	67633342	67633343	rs111479436	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (global cognition) x major depressive disorder interaction (2df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	8q13.1		rs111479436-T	0.01	8E-9				NR [NR] (imputed)	N
1101	chr8	67649680	67649681	rs16933036	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	CAG-273 sp003507395 abundance in stool	5,959 Finnish ancestry individuals	NA	8q13.1		rs16933036-G	0.0265636	1E-8		0.308984	[0.2-0.42] unit increase	Illumina [7980478] (imputed)	N
1101	chr8	67657040	67657040	rs571690420	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q13.1	C8orf44-SGK3, SGK3	rs571690420-C	0.955386	5E-9	(-18 ms)	0.0784004	[0.05-0.107] unit decrease	Affymetrix [10000000] (imputed)	N
1101	chr8	67657040	67657040	rs571690420	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q13.1	C8orf44-SGK3, SGK3	rs571690420-C	0.955386	4E-8	(-16 ms)	0.0737573	[0.045-0.103] unit decrease	Affymetrix [10000000] (imputed)	N
1101	chr8	67657040	67657040	rs571690420	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q13.1	C8orf44-SGK3, SGK3	rs571690420-C	0.955386	2E-8	(-20 ms)	0.0749603	[0.046-0.104] unit decrease	Affymetrix [10000000] (imputed)	N
1101	chr8	67698651	67698652	rs191342285	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	8q13.1	Intergenic	rs191342285-A	NR	2E-7	(between families)	5.233	unit decrease	Affymetrix [up to 15107142] (imputed)	N
1101	chr8	67759299	67759300	rs2272774	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Myopia (age of diagnosis)	104,293 European ancestry individuals	NA	8q13.1	NR	rs2272774-T	0.9919	4E-28		1.801	[1.48-2.12] unit decrease	Illumina [~ 10600000] (imputed)	N
1102	chr8	67827206	67827207	rs68169458	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	8q13.1	NR	rs68169458-C	0.2946	5E-10		0.016926715	[0.012-0.022] unit increase	Affymetrix [10549349] (imputed)	N
1102	chr8	67860368	67860369	rs112859779	30823506	Hong EP	2019-02-25	J Clin Med	Genomic Variations in Susceptibility to Intracranial Aneurysm in the Korean Population.	Intracranial aneurysm	250 Korean ancestry cases, 296 Korean ancestry controls	NA	8q13.1	TCF24	rs112859779-C	0.6699999999999999	3E-16		5.263158	[3.57-8.33]	Affymetrix [508192]	N
1102	chr8	67889469	67889470	rs182838111	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	8q13.1	Intergenic	rs182838111-T	NR	2E-7	(between families)	5.233	unit increase	Affymetrix [up to 15107142] (imputed)	N
1103	chr8	68021903	68021904	rs112758435	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	8q13.2	NR	rs112758435-?	NR	5E-6		0.1812	[0.1-0.26] unit increase	Illumina [at least 560000] (imputed)	N
1104	chr8	68095439	68095440	rs190464679	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	8q13.2	CSPP1, ARFGEF1	rs190464679-T	0.9989	4E-6		1.9123	[1.1-2.72] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1104	chr8	68123273	68123274	rs112783231	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interferon gamma levels	7,701 Finnish ancestry individuals	NA	8q13.2	NR	rs112783231-G		2E-6		0.2408	[0.14-0.34] SD units increase	NR [10700000] (imputed)	N
1104	chr8	68131980	68131981	rs561753392	30073298	Schellevis RL	2018-08-02	JAMA Ophthalmol	Role of the Complement System in Chronic Central Serous Chorioretinopathy: A Genome-Wide Association Study.	Chronic central serous retinopathy	521 European ancestry cases, 3,577 European ancestry controls		8q13.2	ARFGEF1	rs561753392-?	NR	1E-7		42.25	[9.55-186.89]	Illumina [11526719] (imputed)	N
1105	chr8	68203607	68203608	rs13255070	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	8q13.2	NA	rs13255070-A	0.7187	5E-10		0.0136	[0.0093-0.0179] unit decrease	NR [~ 27400000] (imputed)	N
1105	chr8	68274463	68274464	rs141570953	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (global cognition) x major depressive disorder interaction (2df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	8q13.2		rs141570953-A	0.01	5E-10				NR [NR] (imputed)	N
1106	chr8	68351786	68351787	rs151198427	27036123	van Leeuwen EM	2016-04-01	J Med Genet	Meta-analysis of 49 549 individuals imputed with the 1000 Genomes Project reveals an exonic damaging variant in ANGPTL4 determining fasting TG levels.	Cholesterol, total	51,430 European ancestry individuals, 702 East Asian ancestry individuals, 6,480 African American individuals, 1,412 Hispanic individuals	71,032 European ancestry individuals, 10,000 Indian Asian ancestry individuals, 2,707 African American/Afro-Caribbean individuals	8q13.2	CPA6	rs151198427-?	0.11	4E-6		4.797	[2.77-6.83] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1107	chr8	68421564	68421565	rs1393902	25060954	Wolber LE	2014-07-24	Hum Mol Genet	Salt-inducible kinase 3, SIK3, is a new gene associated with hearing.	Hearing function	1,022 European ancestry individuals, 280 Carlantino (founder/genetic isolate) individuals, 1,097 Friuli Venezia Giulia (founder/genetic isolate) individuals, 804 Korcula (founder/genetic isolate) individuals, 497 Split (founder/genetic isolate) individuals, 421 Cilento (founder/genetic isolate) individuals, 470 Talana (founder/genetic isolate) individuals, 348 Silk Road individuals	NA	8q13.2	CPA6, LOC100132812, ARFGEF1	rs1393902-G	NR	3E-7	(PC2)			Affymetrix, Illumina [> 2300000] (imputed)	N
1107	chr8	68427546	68427547	rs1875714	25201988	Rietveld CA	2014-09-08	Proc Natl Acad Sci U S A	Common genetic variants associated with cognitive performance identified using the proxy-phenotype method.	Educational attainment	106,736 European ancestry individuals	NA	8q13.2	intergenic	rs1875714-T	0.628	2E-6		0.022	[NR] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1107	chr8	68524512	68524513	rs1682076	34020725	Reddy JS	2021-05-21	Acta Neuropathol Commun	Genome-wide analysis identifies a novel LINC-PINT splice variant associated with vascular amyloid pathology in Alzheimer's disease.	Cerebral amyloid angiopathy in Alzheimer's disease	821 European ancestry individuals	NA		CPA6	rs1682076-T	0.17	5E-6		0.13	[0.07-0.18] unit increase	Illumina [1679420] (imputed)	N
1107	chr8	68540971	68540972	rs10092095	33109212	Chang H	2020-10-28	BMC Med	Genetic architecture of cardiometabolic risks in people living with HIV.	Triglyceride levels in HIV infection	3,095 European ancestry individuals, 3,189 African American individuals	NA	8q13.2	CPA6	rs10092095-?		5E-7	(EA)	0.12409528	[0.076-0.172] unit increase	Illumina [13620258] (imputed)	N
1107	chr8	68540971	68540972	rs10092095	33109212	Chang H	2020-10-28	BMC Med	Genetic architecture of cardiometabolic risks in people living with HIV.	Triglyceride levels in HIV infection	3,095 European ancestry individuals, 3,189 African American individuals	NA	8q13.2	CPA6	rs10092095-?		5E-7	(African American)	0.12409528	[0.076-0.172] unit increase	Illumina [13620258] (imputed)	N
1108	chr8	68568783	68568784	rs436151	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H measurement	252 European ancestry individuals	NA	8q13.2		rs436151-T	NR	3E-6		6.7827	[4.02-9.55] unit increase	Illumina [NR] (imputed)	N
1108	chr8	68613389	68613390	rs7003257	25102180	Ng MC	2014-08-07	PLoS Genet	Meta-analysis of genome-wide association studies in African Americans provides insights into the genetic architecture of type 2 diabetes.	Type 2 diabetes	8,284 African American cases, 15,543 African American controls	6,061 African American cases, 5,483 African American controls, 8,130 European ancestry cases, 38,987 European ancestry controls	8q13.2	CPA6	rs7003257-T	0.73	9E-6	(AA)	1.1	[1.06-1.15]	Affymetrix, Illumina [2579389] (imputed)	N
1108	chr8	68638794	68638795	rs75800774	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8q13.2	NR	rs75800774-T	0.01568	6E-9	(CYP3A5)	0.1015	NR unit increase	Illumina [1671387] (imputed)	N
1108	chr8	68678149	68678150	rs7461360	25628645	Tong Y	2015-01-13	Front Genet	Identification of genetic variants or genes that are associated with Homoharringtonine (HHT) response through a genome-wide association study in human lymphoblastoid cell lines (LCLs).	Response to Homoharringtonine (cytotoxicity)	93 African American ancestry lymphoblastoid cell lines, 91 European ancestry lymphoblastoid cell lines, 94 Han Chinese ancestry lymphoblastoid cell lines	NA	8q13.2	intergenic	rs7461360-?		2E-6				Affymetrix, Illumina [6750581] (imputed)	N
1109	chr8	68693880	68693881	rs9657089	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8q13.2	NR	rs9657089-G	0.02613	3E-8	(HNRNPA1)	0.09885	NR unit increase	Illumina [1671387] (imputed)	N
1109	chr8	68795617	68795618	rs4276676	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	8q13.2		rs4276676-C	NR	1E-8		0.0119	[0.0078-0.016] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
1109	chr8	68799376	68799377	rs6990917	22379998	McCormack M	2012-03-01	Pharmacogenomics	Genome-wide mapping for clinically relevant predictors of lamotrigine- and phenytoin-induced hypersensitivity reactions.	Adverse response to lamotrigine and phenytoin	34 European ancestry lamotrigine-induced hypersensitivity cases, 42 European ancestry phenytoin-induced hypersensitivity cases, 1,296 European ancestry controls	NA	8q13.2	RP11-396J6.2	rs6990917-?	NR	2E-6	(LTG)			Illumina [NR]	N
1109	chr8	68805607	68805608	rs4487746	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Oscillospira)	1,068 Japanese ancestry individuals	NA	8q13.2	intergenic	rs4487746-A	0.03	4E-6	(male)	0.0843	[0.049-0.12] unit decrease	Illumina [6380737] (imputed)	N
1109	chr8	68809811	68809812	rs62511286	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	8q13.2	NR	rs62511286-T	0.40062	1E-35		0.028104978	[0.024-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
1109	chr8	68809811	68809812	rs62511286	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q13.2	NR	rs62511286-T	0.403847	7E-51				Affymetrix, Illumina [24649327] (imputed)	N
1109	chr8	68809811	68809812	rs62511286	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	8q13.2	NR	rs62511286-T	0.397973	5E-49		0.027686	[0.024-0.031] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1109	chr8	68809811	68809812	rs62511286	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q13.2	NR	rs62511286-T	0.399891	1E-42				Affymetrix, Illumina [23114412] (imputed)	N
1109	chr8	68809811	68809812	rs62511286	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q13.2	NR	rs62511286-T	0.400862	1E-38				Affymetrix, Illumina [23467995] (imputed)	N
1109	chr8	68811042	68811043	rs144345073	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	8q13.2		rs144345073-A	NR	4E-24		0.0212	[0.017-0.025] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
1109	chr8	68811042	68811043	rs144345073	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	8q13.2		rs144345073-A	0.398793	3E-25		0.02356021	[0.019-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
1110	chr8	68813187	68813188	rs12542907	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	8q13.2		rs12542907-G	NR	1E-26		0.023	[0.019-0.027] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
1110	chr8	68813187	68813188	rs12542907	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	8q13.2	NR	rs12542907-G	0.398926	1E-36		0.024199	[0.02-0.028] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1110	chr8	68813187	68813188	rs12542907	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	8q13.2	intergenic	rs12542907-G	0.402	3E-12		0.02563153	[0.018-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1110	chr8	68813187	68813188	rs12542907	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	8q13.2	intergenic	rs12542907-G	0.402	7E-12		0.02510393	[0.018-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1110	chr8	68813187	68813188	rs12542907	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	8q13.2	intergenic	rs12542907-G	0.402	9E-12		0.02499362	[0.018-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1110	chr8	68813187	68813188	rs12542907	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	8q13.2	intergenic	rs12542907-G	0.4021	1E-11		0.02477558	[0.018-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1110	chr8	68813187	68813188	rs12542907	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	8q13.2	intergenic	rs12542907-G	0.4019	5E-13		0.0265302	[0.019-0.034] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1110	chr8	68813187	68813188	rs12542907	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	8q13.2	intergenic	rs12542907-G	0.402	6E-12		0.02526099	[0.018-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1110	chr8	68813828	68813828	rs146723115	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	8q13.2	intergenic	rs146723115-TTA	0.4022	2E-12		0.02575272	[0.019-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1110	chr8	68818448	68818449	rs4338089	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	8q13.2		rs4338089-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1110	chr8	68841405	68841406	rs55809707	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	8q13.2		rs55809707-C	NR	7E-33		0.0238	[0.02-0.028] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1110	chr8	68842926	68842927	rs67241230	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	8q13.2		rs67241230-T	0.598	1E-16				Affymetrix [10369434] (imputed)	N
1110	chr8	68842926	68842927	rs67241230	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	8q13.2		rs67241230-T	0.598	8E-12				Affymetrix [10369434] (imputed)	N
1110	chr8	68842926	68842927	rs67241230	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	8q13.2	NR	rs67241230-G	0.400079	2E-42		0.026828	[0.023-0.031] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
1110	chr8	68842926	68842927	rs67241230	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	8q13.2		rs67241230-?	NR	7E-37				NR [~ 8900000] (imputed)	N
1110	chr8	68852498	68852499	rs62520259	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	8q13.2		rs62520259-G	0.401976	5E-32		0.02656136	[0.022-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
1110	chr8	68909595	68909596	rs6980638	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	8q13.2	NR	rs6980638-?	NR	6E-7				Illumina [at least 7383741] (imputed)	N
1110	chr8	68920134	68920135	rs13253358	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	NA	8q13.2	PREX2	rs13253358-C	0.7021	1E-10		0.2127	[0.15-0.28] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1111	chr8	68968409	68968410	rs6472373	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8q13.2	NR	rs6472373-T	0.02613	2E-8	(FTH1)	0.116	NR unit increase	Illumina [1671387] (imputed)	N
1111	chr8	68999937	68999938	rs4382459	28470677	Tang H	2017-05-03	Int J Cancer	Genetic polymorphisms associated with pancreatic cancer survival: a genome-wide association study.	Survival in pancreatic cancer	868 European ancestry cases	820 European ancestry cases	8q13.2	DEPDC2	rs4382459-T	NR	5E-6		1.56	[1.29-1.89]	NR [7738399] (imputed)	N
1111	chr8	69007751	69007752	rs72660896	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage colony stimulating factor levels	840 Finnish ancestry individuals	NA	8q13.2	NR	rs72660896-T	NR	3E-6		0.1543	[0.089-0.219] SD units increase	NR [10700000] (imputed)	N
1111	chr8	69064259	69064260	rs62522696	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Alcohol consumption x experiences in childhood (felt loved by family member) interaction	41,648 European ancestry individuals	NA	8q13.2		rs62522696-?	NR	3E-9		1.6538	[1.11-2.2] unit decrease	Affymetrix [NR] (imputed)	N
1112	chr8	69103057	69103058	rs78315000	25763902	Draaken M	2015-03-12	PLoS Genet	Genome-wide association study and meta-analysis identify ISL1 as genome-wide significant susceptibility gene for bladder exstrophy.	Classic bladder exstrophy	208 European ancestry cases, 1,703 European ancestry controls	NA	8q13.2	NR	rs78315000-G	0.042	1E-6		3.83	[2.22-6.60]	Illumina [7261187] (imputed)	N
1112	chr8	69120489	69120490	rs10504422	33831438	Williams JE	2021-04-05	Genomics	Key genetic variants associated with variation of milk oligosaccharides from diverse human populations.	Human milk oligosaccharide concentration (lacto-N-fucopentaose III)	395 European, Sub-Saharan African, Hispanic or unknown ancestry individuals	NA	8q13.2		rs10504422-?	NR	7E-12				Illumina [1128286]	N
1113	chr8	69224039	69224040	rs814465	32349335	Lundback V	2020-04-27	Cells	Genome-Wide Association Study of Diabetogenic Adipose Morphology in the GENetics of Adipocyte Lipolysis (GENiAL) Cohort.	Adipose morphology	894 individuals	NA	8q13.2	NR	rs814465-C	0.0537	1E-6		82.0	[49-114] unit increase	NR [9714326] (imputed)	N
1113	chr8	69242973	69242974	rs116317841	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	8q13.2	NR	rs116317841-T	0.01	9E-6		1.31	[1.19-1.43]	Illumina [8468885] (imputed)	N
1114	chr8	69346688	69346689	rs2944715	34177598	Wolking S	2021-06-09	Front Pharmacol	Role of Common Genetic Variants for Drug-Resistance to Specific Anti-Seizure Medications.	Response to oxcarbazepine in focal epilepsy	98 European ancestry cases, 296 European ancestry controls	NA			rs2944715-?	NR	3E-6				Illumina [NR] (imputed)	N
1114	chr8	69389216	69389217	rs1517114	22664479	Han JY	2012-06-05	Pharmacogenomics J	A genome-wide association study for irinotecan-related severe toxicities in patients with advanced non-small-cell lung cancer.	Response to irinotecan in non-small-cell lung cancer	101 non-small-cell lung cancer cases	146 non-small-cell lung cancer cases	8q13.2	C8orf34	rs1517114-C	0.12	9E-6	(G3D)	4.1	[2.10-8.00]	Affymetrix [312230]	N
1114	chr8	69431710	69431711	rs2380472	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 142,336 Japanese ancestry controls	NA	8q13.2	C8orf34	rs2380472-?	NR	2E-8		0.0854075	[0.055-0.115] unit decrease	Illumina [19707525] (imputed)	N
1114	chr8	69444613	69444614	rs72664998	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Colorectal cancer	3,351 White British ancestry cases, 271,479 White British ancestry controls	NA	8q13.2		rs72664998-?	NR	7E-6		0.663095	[0.48-0.84]	NR [675173]	N
1114	chr8	69467873	69467874	rs118114209	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Alcohol consumption x traumatic event in childhood (felt hated by family member) interaction	46,394 European ancestry individuals	NA	8q13.2		rs118114209-?	NR	2E-8		2.2456	[1.47-3.02] unit increase	Affymetrix [NR] (imputed)	N
1115	chr8	69501692	69501696	rs10615819	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	8q13.2	C8orf34	rs10615819-G	0.5732	1E-6		0.0401	[0.024-0.056] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1115	chr8	69562013	69562014	rs12543555	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	8q13.2	C8orf34	rs12543555-G	NR	4E-8		0.0191917	[0.012-0.026] unit increase	Affymetrix [319769] (imputed)	N
1115	chr8	69562013	69562014	rs12543555	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	8q13.2	C8orf34	rs12543555-G	NR	3E-8		0.0194207	[0.013-0.026] unit increase	Affymetrix [319769] (imputed)	N
1115	chr8	69562013	69562014	rs12543555	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	8q13.2	C8orf34	rs12543555-G	NR	3E-8		0.0199817	[0.013-0.027] unit decrease	Affymetrix [321788] (imputed)	N
1115	chr8	69562013	69562014	rs12543555	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	8q13.2	NR	rs12543555-?	NR	4E-9				Affymetrix [~ 8270000] (imputed)	N
1115	chr8	69562013	69562014	rs12543555	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	8q13.2		rs12543555-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1115	chr8	69562013	69562014	rs12543555	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	8q13.2	NR	rs12543555-A	0.8088	2E-10		0.0138	[0.0095-0.0181] unit decrease	NR [~ 27400000] (imputed)	N
1115	chr8	69563694	69563695	rs7825271	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	8q13.2	C8orf34	rs7825271-C	0.251	3E-7	(AST )	0.04	[NR] U/L increase	Illumina [899892]	N
1115	chr8	69570331	69570332	rs17387279	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	8q13.2		rs17387279-?	NR	2E-17				NR [~ 8900000] (imputed)	N
1115	chr8	69590553	69590554	rs10282983	34450027	Boer CG	2021-08-24	Cell	Deciphering osteoarthritis genetics across 826,690 individuals from 9 populations.	Osteoarthritis (with total hip replacement)	up to 23,021 European, East Asian ancestry female cases, up to 296,016 European, East Asian ancestry female controls	NA	8q13.2		rs10282983-T	0.22	2E-14		1.15	[1.11-1.19]	Affymetrix, Illumina [NR] (imputed)	N
1116	chr8	69616116	69616117	rs12543018	33109212	Chang H	2020-10-28	BMC Med	Genetic architecture of cardiometabolic risks in people living with HIV.	HDL cholesterol levels in HIV infection	3,095 European ancestry individuals, 3,189 African American individuals	NA	8q13.2	C8orf34	rs12543018-?		7E-6	(African American)	0.11472299	[0.065-0.165] unit decrease	Illumina [13620258] (imputed)	N
1116	chr8	69631766	69631767	rs12544468	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	8q13.2	C8orf34	rs12544468-C	NR	5E-9		0.0243655	[0.016-0.033] unit decrease	Affymetrix [321788] (imputed)	N
1116	chr8	69644163	69644164	rs7837124	32047095	Traglia M	2020-02-11	Genetics	Genetic Contributions to Maternal and Neonatal Vitamin D Levels.	Neonatal total 25-hydroxyvitamin D levels (maternal genetic effect)	269 European ancestry individuals, 323 Hispanic individuals, 115 East Asian ancestry individuals, 23 African American individuals, 23 South Asian ancestry individuals, 23 individuals	NA	8q13.2	c8orf34	rs7837124-?	NR	3E-6		1.61	[0.94-2.28] unit increase	Affymetrix [629686]	N
1116	chr8	69681665	69681666	rs719689	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8q13.2	DEPDC2	rs719689-?	NR	9E-6	(TAG 58:10)	0.17132612	[0.096-0.247] unit increase	Affymetrix [at least 2500000] (imputed)	N
1117	chr8	69730718	69730719	rs16935110	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	8q13.2	C8orf34	rs16935110-T	0.116	5E-6	(Urinary free norepinephrine )	0.03	[NR] nmol/d increase	Illumina [899892]	N
1117	chr8	69741315	69741316	rs2978233	32009195	Condreay LD	2020-02-03	Rheumatol Int	Pharmacogenetic investigation of efficacy response to mepolizumab in eosinophilic granulomatosis with polyangiitis.	Accrued duration of remission in mepolizumab-treated eosinophilic granulomatosis with polyangiitis	61 individuals	NA	8q13.2	NR	rs2978233-?	NR	4E-7		0.8597	[0.56-1.16] unit decrease	Affymetrix [7154205] (imputed)	N
1117	chr8	69752192	69752193	rs13280929	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	8q13.2		rs13280929-?	NR	8E-9				NR [~ 8900000] (imputed)	N
1117	chr8	69838775	69838776	rs74478345	31560688	Geidenstam N	2019-09-27	PLoS One	Using metabolite profiling to construct and validate a metabolite risk score for predicting future weight gain.	Tyrosine levels	1,937 individuals	NA	8q13.2	RP11-600K15.1	rs74478345-T	0.002	5E-7		3.3013	[2.02-4.58] unit increase	Affymetrix, Illumina [up to 22000000] (imputed)	N
1117	chr8	69855506	69855507	rs7001339	31095298	Huang M	2019-05-16	Bioinformatics	Incorporating spatial-anatomical similarity into the VGWAS framework for AD biomarker detection.	Voxel-wise structural brain imaging measurements in Alzheimer's disease	708 European ancestry individuals	NA	8q13.2	LINC01592	rs7001339-?	NR	2E-6				Illumina [501584]	N
1118	chr8	69873451	69873452	rs16935279	25944848	Athanasiu L	2015-05-05	J Psychopharmacol	Genome-wide association study identifies common variants associated with pharmacokinetics of psychotropic drugs.	Pharmacokinetics of antiepileptic drugs in severe mental disorder (concentration drug ratio)	Up to 185 European ancestry cases	NA	8q13.2	LOC100505718	rs16935279-C	0.014	5E-10		0.7918	[NR] unit decrease	Affymetrix [686595]	N
1118	chr8	69891493	69891494	rs10096087	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	8q13.2	NR	rs10096087-T	NR	3E-6	(male)	0.1674	[0.097-0.238] unit increase	Illumina [11133794] (imputed)	N
1118	chr8	69895505	69895506	rs4737933	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	8q13.2		rs4737933-?	NR	3E-11		0.0147848	[0.011-0.019] unit increase	Affymetrix [20259828] (imputed)	N
1118	chr8	69992379	69992380	rs2912522	28886342	Ng M	2017-09-07	Am J Hum Genet	A Genome-wide Association Study of Dupuytren Disease Reveals 17 Additional Variants Implicated in Fibrosis.	Dupuytren's disease	3,871 European ancestry cases, 4,686 European ancestry controls	4,041 European and unknown ancestry cases, 8,251 European and unknown ancestry controls	8q13.2	LOC100505718	rs2912522-?	0.799	4E-29		1.3586956	[1.29-1.43]	Illumina [238825]	N
1118	chr8	69992379	69992380	rs2912522	21732829	Dolmans GH	2011-07-06	N Engl J Med	Wnt signaling and Dupuytren's disease.	Dupuytren's disease	856 European ancestry cases, 2,836 European ancestry controls	1,298 European ancestry cases, 7,136 European ancestry controls	8q13.2	SULF1, C8orf34	rs2912522-?	0.8	2E-13		1.39	[1.28-1.52]	Illumina [234939]	N
1119	chr8	70006622	70006623	rs62511820	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		LINC01592	rs62511820-?	NR	4E-8	(male)	3.00555	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1119	chr8	70007937	70007938	rs629535	28886342	Ng M	2017-09-07	Am J Hum Genet	A Genome-wide Association Study of Dupuytren Disease Reveals 17 Additional Variants Implicated in Fibrosis.	Dupuytren's disease	3,871 European ancestry cases, 4,686 European ancestry controls	4,041 European and unknown ancestry cases, 8,251 European and unknown ancestry controls	8q13.2	LOC100505718	rs629535-T	0.351	4E-40		1.357	[1.297-1.42]	Illumina [238825]	N
1119	chr8	70059256	70059257	rs614905	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	8q13.2		rs614905-G	NR	3E-10		0.0091	[0.0064-0.0118] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1119	chr8	70092836	70092837	rs10504440	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	8q13.2		rs10504440-?	NR	6E-10				NR [~ 8900000] (imputed)	N
1120	chr8	70180250	70180251	rs283324	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	8q13.2		rs283324-?	NR	1E-27		0.025989	[0.021-0.031] unit increase	Affymetrix [20259828] (imputed)	N
1120	chr8	70180250	70180251	rs283324	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	8q13.2	LINC01603	rs283324-G	0.778415	3E-10		0.0243703	[0.016-0.032] unit increase	NR [17166351] (imputed)	N
1120	chr8	70180250	70180251	rs283324	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	8q13.2	LINC01603	rs283324-G	0.778196	2E-8	(women)	0.0305827	[0.02-0.041] unit increase	NR [17166351] (imputed)	N
1120	chr8	70182014	70182015	rs11988286	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	8q13.2		rs11988286-?	NR	2E-27		0.0263849	[0.021-0.031] unit increase	Affymetrix [20259828] (imputed)	N
1120	chr8	70191095	70191096	rs283342	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	8q13.2		rs283342-?	NR	4E-31				NR [~ 8900000] (imputed)	N
1120	chr8	70195150	70195151	rs283338	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	8q13.2	LINC01603	rs283338-G	0.783079	2E-30		0.0257312	[0.021-0.03] unit increase	NR [13737936] (imputed)	N
1120	chr8	70232810	70232811	rs144765000	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q13.2	NR	rs144765000-T	0.998754	4E-17				Affymetrix, Illumina [24588908] (imputed)	N
1121	chr8	70281553	70281554	rs190997771	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Trunk fat mass	3,399 whole genome sequenced individuals, 12,838 European ancestry individuals	10,667 European ancestry individuals	8q13.2	LINC01603	rs190997771-A	0.0096	2E-6		0.3262	[0.19-0.46] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1121	chr8	70281553	70281554	rs190997771	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body fat mass	3,399 whole genome sequenced individuals, 11,802 European ancestry individuals	10,670 European ancestry individuals	8q13.2	LINC01603	rs190997771-A	0.0097	4E-6		0.2959	[0.17-0.42] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1121	chr8	70315290	70315291	rs78305993	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	8q13.2	NR	rs78305993-T	0.999364	9E-22		2.59755	[2.07-3.13] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1121	chr8	70361624	70361625	rs74461346	28762467	Wadelius M	2017-08-01	Clin Pharmacol Ther	Sulfasalazine-Induced Agranulocytosis Is Associated With the Human Leukocyte Antigen Locus.	Sulfasalazine-induced agranulocytosis	36 European ancestry cases, 5,170 European ancestry untreated controls	NA	8q13.2	intergenic	rs74461346-?	NR	7E-7		5.22	[2.72-10.02]	Illumina [9380034] (imputed)	N
1121	chr8	70362414	70362415	rs6989821	32769997	Zhou W	2020-08-07	Nat Commun	GWAS of thyroid stimulating hormone highlights pleiotropic effects and inverse association with thyroid cancer.	Thyroid stimulating hormone levels	119,715 European ancestry individuals	NA	8q13.2	LINC01603, SULF1	rs6989821-C	0.291890127425728	7E-10		0.031	[0.021-0.041] SD increase	Illumina [22400000] (imputed)	N
1121	chr8	70365024	70365025	rs10957494	30367059	Teumer A	2018-10-26	Nat Commun	Genome-wide analyses identify a role for SLC17A4 and AADAT in thyroid hormone regulation.	Thyroid stimulating hormone levels	54,288 European ancestry individuals	up to 22,383 European ancestry individuals	8q13.2	SULF1	rs10957494-A	0.69	4E-9		0.036	[0.024-0.048] unit decrease	Affymetrix, Illumina [8048941] (imputed)	N
1121	chr8	70367190	70367191	rs1441207	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	8q13.2		rs1441207-?	NR	1E-13				NR [~ 8900000] (imputed)	N
1121	chr8	70367247	70367248	rs7465401	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	8q13.2	LOC100505739	rs7465401-T	0.7263	7E-8		0.0153	[0.0098-0.0208] unit decrease	Affymetrix [19819130] (imputed)	N
1121	chr8	70367247	70367248	rs7465401	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	8q13.2	LOC100505739	rs7465401-T	0.7263	1E-7		0.014	[0.0089-0.0191] unit decrease	Affymetrix [19819130] (imputed)	N
1121	chr8	70367247	70367248	rs7465401	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	8q13.2	LOC100505739	rs7465401-T	0.7263	7E-11		0.0175	[0.012-0.023] unit decrease	Affymetrix [19819130] (imputed)	N
1121	chr8	70367247	70367248	rs7465401	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	8q13.2	LOC100505739	rs7465401-T	0.7263	9E-16		0.0211	[0.016-0.026] unit decrease	Affymetrix [19819130] (imputed)	N
1121	chr8	70373383	70373384	rs16935893	31358989	Gelernter J	2019-07-29	Nat Neurosci	Genome-wide association study of post-traumatic stress disorder reexperiencing symptoms in >165,000 US veterans.	Post-traumatic stress disorder (re-experiencing symptoms)	146,660 European ancestry individuals, 19,983 African American individuals	117,900 European ancestry individuals	8q13.2	NR	rs16935893-?	NR	7E-6	(AA)	0.62656	[NR] unit decrease	Affymetrix [49134253] (imputed)	N
1122	chr8	70410060	70410061	rs145036678	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	8q13.2	SULF1	rs145036678-T	NR	4E-6	(women)	0.198258	[0.11-0.28] unit decrease	Illumina [13520550] (imputed)	N
1122	chr8	70412449	70412450	rs6982250	21998595	N'Diaye A	2011-10-06	PLoS Genet	Identification, replication, and fine-mapping of Loci associated with adult height in individuals of african ancestry.	Height	20,427 African ancestry individuals	Up to 16,436 African American individuals	8q13.2	SULF1	rs6982250-T	0.25	1E-6		0.046	[0.026-0.066] unit decrease	Affymetrix, Illumina [3310998] (imputed)	N
1122	chr8	70472492	70472493	rs117742432	32581322	Kakuta Y	2020-06-24	Sci Rep	An Integrated Genomic and Transcriptomic Analysis Reveals Candidates of Susceptibility Genes for Crohn's Disease in Japanese Populations.	Crohn's disease	713 Japanese ancestry cases, 2,063 Japanese ancestry controls	NA	8q13.2	SULF1	rs117742432-?	NR	7E-6		1.1627907	[1.09-1.23]	NR [7424691] (imputed)	N
1122	chr8	70490014	70490015	rs10108002	32579418	Maukonen M	2020-06-24	J Biol Rhythms	Genetic Associations of Chronotype in the Finnish General Population.	Evening vs. morning chronotype (sMEQ score)	2,364 Finnish ancestry evening individuals, 5,072 Finnish ancestry morning individuals	NA	8q13.2	SULF1	rs10108002-?	NR	5E-6		1.2062494	[1.11-1.31]	Illumina [5842835] (imputed)	N
1122	chr8	70493973	70493974	rs13273088	22581228	Manning AK	2012-05-13	Nat Genet	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting blood insulin (BMI interaction)	Up to 51,750 European ancestry individuals	Up to 33,823 European ancestry individuals	8q13.2	SULF1	rs13273088-A	0.7922	7E-7		0.001126	[-0.00042-0.00268] unit increase	Affymetrix, Illumina [~ 2400000] (imputed)	N
1123	chr8	70543284	70543285	rs4738009	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		SULF1	rs4738009-?	NR	7E-9	(female)	1.75422	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1123	chr8	70568684	70568685	rs10107990	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Yeast infection	52,218 European ancestry cases, 10,235 European ancestry controls	NA	8q13.3	NR	rs10107990-?	NR	9E-6		0.0301	[0.017-0.043] unit increase	Illumina [at least 560000] (imputed)	N
1123	chr8	70576129	70576130	rs4738017	28806749	Leo PJ	2017-08-14	PLoS Genet	Defining the genetic susceptibility to cervical neoplasia-A genome-wide association study.	Cervical cancer	2,866 European ancestry cases, 6,481 European ancestry controls	NA	8q13.3	SULF1, SLCO5A1	rs4738017-G	NR	7E-6		1.174	[NR]	Illumina [10863230] (imputed)	N
1123	chr8	70605841	70605842	rs118135146	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	8q13.3		rs118135146-?	NR	6E-9				NR [~ 8900000] (imputed)	N
1124	chr8	70657829	70657830	rs4370538	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Skin reflectance (Melanin index)	720 South Asian ancestry individuals		8q13.3	NR	rs4370538-G	NR	6E-6	(conditioned on rs1426654)	0.445272	[0.25-0.64] unit decrease	Affymetrix, Illumina [at least 398118] (imputed)	N
1124	chr8	70665562	70665563	rs10101039	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Lateral ventricle volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	8q13.3	SLCO5A1	rs10101039-?		7E-7				Illumina [4322238] (imputed)	N
1124	chr8	70680982	70680983	rs10090896	23934736	Yu B	2013-08-11	Genet Epidemiol	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels  (X-11787)	1,260 African American individuals	NA	8q13.3	SLCO5A1	rs10090896-A		2E-6		0.04	[0.02-0.06] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1124	chr8	70683639	70683640	rs140697675	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,931 Sub-Saharan African ancestry males	NA	8q13.3		rs140697675-T	0.98129	9E-6		0.0474406	[0.027-0.068] unit decrease	Illumina [13900000] (imputed)	N
1124	chr8	70724753	70724754	rs16936455	20041166	Fellay J	2009-12-24	PLoS Genet	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	8q13.3	NR	rs16936455-?	NR	7E-6	(progression)			Illumina [NR]	N
1124	chr8	70734189	70734190	rs6999934	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	8q13.3	SLCO5A1	rs6999934-G	0.48956	1E-9		0.013582759	[0.0092-0.0179] unit decrease	Affymetrix [93095623] (imputed)	N
1124	chr8	70740895	70740896	rs2380606	31869403	Kowalski MH	2019-12-23	PLoS Genet	Use of >100,000 NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium whole genome sequences improves imputation quality and detection of rare variant associations in admixed African and Hispanic/Latino populations.	White blood cell count	14,743 African American individuals, 6,762 African ancestry individuals, 21,034 Hispanic/Latino individuals	6,743 African American individuals	8q13.3	NR	rs2380606-C	NR	1E-6	(Hispanic/Latino)	0.049	NR unit decrease	Affymetrix, Illumina [up to 35800000] (imputed)	N
1124	chr8	70740895	70740896	rs2380606	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	8q13.3	SLCO5A1	rs2380606-T	0.4498	2E-9	(Hex2Cer d18:2/16:0)	0.0874	[0.059-0.115] unit decrease	Illumina [~ 47000000] (imputed)	N
1124	chr8	70748108	70748109	rs13276735	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (neutrophil)	21,347 Hispanic or Latin American individuals	NA	8q13.3		rs13276735-C	0.5059	2E-13		0.0854	[0.063-0.108] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1124	chr8	70748108	70748109	rs13276735	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	White blood cell count	8,825 African American individuals, 18,251 Hispanic/Latino individuals, 543 Asian ancestry individuals, 606 Native American ancestry individuals, 383 individuals	NA	8q13.3	RP11-159H10.3	rs13276735-?	NR	3E-9	(Hispanic/Latino)	0.01816043	[0.012-0.024] unit decrease	Illumina [30613845] (imputed)	N
1124	chr8	70748108	70748109	rs13276735	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	White blood cell count	8,825 African American individuals, 18,251 Hispanic/Latino individuals, 543 Asian ancestry individuals, 606 Native American ancestry individuals, 383 individuals	NA	8q13.3	RP11-159H10.3	rs13276735-?	NR	1E-8		0.015	[0.0091-0.0209] unit decrease	Illumina [30613845] (imputed)	N
1124	chr8	70750144	70750145	rs117969400	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	8q13.3	SLCO5A1	rs117969400-A	0.0241144911383595	5E-6		0.0083368	[NR] unit increase	Affymetrix [> 30000000] (imputed)	N
1124	chr8	70753872	70753873	rs7012009	30557370	Baas J	2018-12-17	PLoS One	Genome wide association study to identify predictors for severe skin toxicity in colorectal cancer patients treated with cetuximab.	Severe skin toxicity response to cetuximab in colorectal cancer	36 cases, 246 controls with no or mild skin toxicity	NA	8q13.3	Intergenic	rs7012009-?	NR	2E-6		25.0	[2.7-100]	Illumina [5830976] (imputed)	N
1125	chr8	70805024	70805025	rs969930	27325353	Matteini AM	2016-06-21	Aging Cell	GWAS analysis of handgrip and lower body strength in older adults in the CHARGE consortium.	Lower body strength	9,822 European ancestry individuals	NA	8q13.3	intergenic	rs969930-T	0.63	8E-7		4.97	NR Z score increase	Affymetrix, Illumina [2725778] (imputed)	N
1125	chr8	70808488	70808489	rs192230665	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q13.3	NR	rs192230665-C	8.93994E-4	1E-18				Affymetrix, Illumina [24588908] (imputed)	N
1125	chr8	70809260	70809261	rs12680109	20732625	Neale BM	2010-08-01	J Am Acad Child Adolesc Psychiatry	Meta-analysis of genome-wide association studies of attention-deficit/hyperactivity disorder.	Attention deficit hyperactivity disorder	2,064 European ancestry trios, 896 European ancestry cases, 2,455 European ancestry controls	NA	8q13.3	TCEB1	rs12680109-T	NR	7E-6				Affymetrix, Illumina, Perlegen [1206462] (imputed)	N
1125	chr8	70812049	70812050	rs6472494	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Prevotella)	1,068 Japanese ancestry individuals	NA	8q13.3	intergenic	rs6472494-G	0.24	3E-6		1.13	[0.66-1.6] unit decrease	Illumina [6380737] (imputed)	N
1125	chr8	70837396	70837397	rs7843437	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	8q13.3	LOC100288097, LOC100288139	rs7843437-?	0.62	1E-6	(Turkish)	1.6129031	[1.32-1.96]	Illumina [up to 547389]	N
1125	chr8	70867647	70867648	rs1010754	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	8q13.3	NR	rs1010754-?	NR	7E-18		0.25	[0.17-0.33] unit decrease	Illumina [at least 830937] (imputed)	N
1126	chr8	70935438	70935439	rs56065347	33232274	Mohammadnejad A	2020-11-24	Aging (Albany NY)	Generalized correlation coefficient for genome-wide association analysis of cognitive ability in twins.	Cognitive function (generalized correlation coefficient)	900 Danish ancestry dizygotic twins, 272 Danish ancestry monozygotic twins	NA	8q13.3	NR	rs56065347-?	NR	1E-7			[NR]	Illumina [5779266] (imputed)	N
1126	chr8	70950279	70950280	rs7008026	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	8q13.3	NR	rs7008026-C	NR	6E-6		1.0638298	[NR]	Illumina [7158791] (imputed)	N
1126	chr8	70964742	70964743	rs7012816	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	8q13.3	PRDM14	rs7012816-A	NR	2E-8		1.072	[1.05-1.1]	Illumina [6627481] (imputed)	N
1126	chr8	70964742	70964743	rs7012816	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	8q13.3	intergenic	rs7012816-A	NR	4E-7		1.064	[1.04-1.09]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1126	chr8	70976178	70976179	rs7835836	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	8q13.3	NR	rs7835836-?	NR	1E-7		5.297	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1126	chr8	70976504	70976505	rs7010162	28604732	Wang Z	2017-06-12	Nat Genet	Meta-analysis of five genome-wide association studies identifies multiple new loci associated with testicular germ cell tumor.	Testicular germ cell tumor	3,558 European ancestry cases, 13,970 European ancestry controls	NA	8q13.3	PRDM14	rs7010162-T	0.39	1E-7		1.1627907	[1.10-1.23]	Illumina [9210350] (imputed)	N
1126	chr8	70976504	70976505	rs7010162	28604728	Litchfield K	2017-06-12	Nat Genet	Identification of 19 new risk loci and potential regulatory mechanisms influencing susceptibility to testicular germ cell tumor.	Testicular germ cell tumor	5,518 European ancestry cases, 19,055 European ancestry controls	1,801 European ancestry cases, 4,027 European ancestry controls	8q13.3	PRDM14	rs7010162-C	0.62	5E-8		1.15	[1.10-1.20]	Illumina [at least 371504] (imputed)	N
1126	chr8	70976504	70976505	rs7010162	23666240	Ruark E	2013-05-12	Nat Genet	Identification of nine new susceptibility loci for testicular cancer, including variants near DAZL and PRDM14.	Testicular germ cell tumor	986 European ancestry cases, 4,946 European ancestry controls	1,064 European ancestry cases, 10,082 European ancestry controls	8q13.3	PRDM14	rs7010162-G	0.61	5E-8		1.22	[1.11-1.34]	Illumina [307291]	N
1126	chr8	70995466	70995467	rs13274876	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip	15 Asian ancestry cases, 13 European ancestry cases, 15 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	8q13.3	NR	rs13274876-?	NR	5E-6		4.97	[3.78-6.52]	Illumina [539000] (imputed)	N
1126	chr8	71009219	71009220	rs9773950	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	8q13.3		rs9773950-G	0.321821	3E-11		0.016054284	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1126	chr8	71013590	71013591	rs113815096	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	8q13.3		rs113815096-T	NR	3E-8		0.0149	[0.0096-0.0202] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1126	chr8	71014078	71014079	rs6982451	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	HDL cholesterol levels	34,930 East Asian ancestry individuals, 187,167 European ancestry individuals	8,741 Chinese ancestry individuals	8q13.3	NCOA2	rs6982451-A	0.7916	6E-8	(Trans-ethnic initial)	0.0173	[0.0091-0.0255] unit increase (EA Beta values)	Affymetrix, Illumina [~ 1900000] (imputed)	N
1126	chr8	71023388	71023389	rs118135766	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure in major depressive disorder-negative individuals	10,701 European ancestry cases, 39,677 European ancestry controls	NA	8q13.3	NR	rs118135766-C	0.0135946	8E-6		1.12	[1.07-1.17]	Affymetrix [7791636] (imputed)	N
1126	chr8	71039117	71039118	rs2228591	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	8q13.3	NCOA2	rs2228591-G	NR	4E-8		0.0397114	[0.026-0.054] unit increase	Affymetrix [323858] (imputed)	N
1127	chr8	71102750	71102751	rs57994514	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q13.3	NR	rs57994514-A	0.152919	3E-10				Affymetrix, Illumina [23472807] (imputed)	N
1127	chr8	71102750	71102751	rs57994514	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	8q13.3	NR	rs57994514-A	0.127328	6E-11		0.018591	[0.013-0.024] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1127	chr8	71102750	71102751	rs57994514	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	8q13.3	NCOA2	rs57994514-A	NR	5E-8		0.02431361	[0.016-0.033] unit decrease	Affymetrix [NR]	N
1127	chr8	71108547	71108548	rs10091910	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	8q13.3		rs10091910-C	NR	2E-16		0.0216	[0.017-0.027] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
1127	chr8	71108547	71108548	rs10091910	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Serum alkaline phosphatase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	8q13.3	NCOA2	rs10091910-?		3E-9		0.0253	[0.017-0.034] unit decrease	Illumina [31500000] (imputed)	N
1127	chr8	71108547	71108548	rs10091910	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum alkaline phosphatase levels	105,030 Japanese ancestry individuals	NA	8q13.3	NCOA2	rs10091910-?	NR	3E-9		0.02627	[0.018-0.035] unit decrease novel	Illumina [6108953] (imputed)	N
1127	chr8	71129812	71129813	rs4738080	34274964	Duijvenboden S	2021-07-19	Hum Mol Genet	Genomic and pleiotropic analyses of resting QT interval identifies novel loci and overlap with atrial electrical disorders.	QT interval	27,612 European ancestry women	NA	8q13.3		rs4738080-A	0.07	8E-6		0.051	[0.029-0.073] unit increase	Affymetrix [NR]	N
1127	chr8	71129812	71129813	rs4738080	34274964	Duijvenboden S	2021-07-19	Hum Mol Genet	Genomic and pleiotropic analyses of resting QT interval identifies novel loci and overlap with atrial electrical disorders.	QT interval	24,495 European ancestry men	NA	8q13.3		rs4738080-A	0.07	1E-6		0.056	[0.032-0.08] unit increase	Affymetrix [NR]	N
1127	chr8	71129812	71129813	rs4738080	32472697	Verma SS	2020-05-30	Clin Pharmacol Ther	Genome-wide association study of platelet reactivity and cardiovascular response in patients treated with clopidogrel: a study by the International Clopidogrel Pharmacogenomics Consortium (ICPC).	Stent thrombosis in response to clopidogrel treatment	37 European ancestry cases, 2,542 European ancestry controls	NA	8q13.3	NR	rs4738080-G	0.909321	7E-7		4.4665666	NR	Illumina [5009928] (imputed)	N
1127	chr8	71139329	71139330	rs72663955	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	8q13.3	NCOA2	rs72663955-G	0.132897	6E-13		0.024034245	[0.017-0.031] unit increase	Affymetrix [93095623] (imputed)	N
1127	chr8	71139329	71139330	rs72663955	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	8q13.3	NR	rs72663955-T	0.866861	5E-9		0.00726042	[0.0048-0.0097] unit increase	Affymetrix [16582909] (imputed)	N
1127	chr8	71139329	71139330	rs72663955	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	8q13.3	NR	rs72663955-T	0.866861	8E-9		0.00767264	[0.005-0.0104] unit increase	Affymetrix [16582965] (imputed)	N
1127	chr8	71139329	71139330	rs72663955	23319000	Luykx JJ	2013-01-15	Mol Psychiatry	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA-5-HIAA Factor score)	up to 398 European ancestry individuals	NA	8q13.3	NCOA2	rs72663955-G		6E-6		0.2246	unit increase	Illumina [5767231] (imputed)	N
1127	chr8	71143555	71143556	rs2977986	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	8q13.3	NCOA2	rs2977986-A	0.153617	2E-18		0.00272133	[0.0021-0.0034] unit increase	Affymetrix [13995440] (imputed)	N
1127	chr8	71152802	71152803	rs75349541	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	8q13.3	NR	rs75349541-C	0.867294	2E-8		0.00868831	[0.0053-0.012] unit increase	Affymetrix [16582621] (imputed)	N
1127	chr8	71152802	71152803	rs75349541	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	8q13.3	NR	rs75349541-C	0.867294	3E-7		0.00887246	[0.0053-0.0124] unit increase	Affymetrix [16582614] (imputed)	N
1127	chr8	71162116	71162117	rs2977976	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	8q13.3	NCOA2	rs2977976-G	0.15	5E-18		8.65	z-score increase	Affymetrix [4311822] (imputed)	N
1127	chr8	71164274	71164275	rs113654977	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	8q13.3	NR	rs113654977-?	NR	3E-7		5.095	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1127	chr8	71167993	71167994	rs2926702	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	8q13.3		rs2926702-T	0.8739	5E-9		0.0124	[0.0083-0.0165] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1127	chr8	71167993	71167994	rs2926702	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	8q13.3	Intergenic	rs2926702-T	0.8739	1E-9	(MTAG)	0.012	[0.0081-0.0159] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1127	chr8	71167993	71167994	rs2926702	23144319	Lee Y	2012-11-08	Carcinogenesis	Prognostic implications of genetic variants in advanced non-small cell lung cancer: a genome-wide association study.	Non-small cell lung cancer	348 Korean ancestry cases	NA	8q13.3	NCOA2	rs2926702-T	0.572	7E-6	(Additive model)			Affymetrix [271817]	N
1127	chr8	71170603	71170604	rs2926701	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	41,389 African ancestry individuals	11,364 African ancestry individuals, 253,288 European ancestry individuals	8q13.3	NCOA2	rs2926701-C	0.366	9E-9	(AA)	0.04	[0.026-0.054] unit increase	Affymetrix, Illumina [17972582] (imputed)	N
1127	chr8	71170603	71170604	rs2926701	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	25,369 African ancestry women	8,449 African ancestry women, up to 253,288 European ancestry women	8q13.3	NCOA2	rs2926701-C	0.365	3E-6	(AA)	0.04	[0.022-0.058] unit increase	Affymetrix, Illumina [19885954] (imputed)	N
1128	chr8	71177443	71177444	rs150377334	28521775	Manichaikul A	2017-05-18	Respir Res	Genome-wide association study of subclinical interstitial lung disease in MESA.	Subclinical trait of interstitial lung disease (basilar peel-core ratio of high attentuation areas on CT scan)	2,434 European ancestry individuals, 2,470 African American individuals, 2,065 Hispanic individuals, 702 Chinese ancestry individuals	NA	8q13.3	NCOA2	rs150377334-A	0.009	8E-10	(AA)	0.238	[0.16-0.31] unit increase	Affymetrix [at least 897981] (imputed)	N
1128	chr8	71178049	71178049	rs542232558	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	8q13.3	NCOA2	rs542232558-TGTG	NR	7E-10		0.0466433	[0.032-0.061] unit increase	Affymetrix [323123] (imputed)	N
1128	chr8	71189341	71189342	rs16936870	24952745	Arking DE	2014-06-22	Nat Genet	Genetic association study of QT interval highlights role for calcium signaling pathways in myocardial repolarization.	QT interval	Up to 70,389 European ancestry individuals, up to 672 Orcadian individuals	Up to 33,316 European ancestry individuals	8q13.3	NCOA2	rs16936870-A	0.097	1E-9		0.99	[0.68-1.3] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1128	chr8	71200158	71200159	rs13256016	34154395	Brikell I	2021-06-22	Am J Psychiatry	Genetic, Clinical, and Sociodemographic Factors Associated With Stimulant Treatment Outcomes in ADHD.	Switch to non-stimulant treatment in ADHD	1,137 European ancestry cases, 3,854 European ancestry controls	NA	8q13.3		rs13256016-A	0.106	4E-6		0.061	[0.036-0.086] unit increase	Illumina [6361597] (imputed)	N
1128	chr8	71218359	71218360	rs13260060	33536424	Wang YF	2021-02-03	Nat Commun	Identification of 38 novel loci for systemic lupus erythematosus and genetic heterogeneity between ancestral groups.	Systemic lupus erythematosus	4,222 Han Chinese ancestry cases, 8,431 Han Chinese ancestry controls, 4,576 European ancestry cases, 8,039 European ancestry controls	NA	8q13.3	NCOA2	rs13260060-A	NR	8E-8		0.9	[0.86-0.94]	Illumina [NR] (imputed)	N
1128	chr8	71218359	71218360	rs13260060	33536424	Wang YF	2021-02-03	Nat Commun	Identification of 38 novel loci for systemic lupus erythematosus and genetic heterogeneity between ancestral groups.	Systemic lupus erythematosus	4,222 Han Chinese ancestry cases, 8,431 Han Chinese ancestry controls	NA	8q13.3	NCOA2	rs13260060-A	NR	2E-8		0.889	[0.85-0.93]	Illumina [5719137] (imputed)	N
1128	chr8	71218359	71218360	rs13260060	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	8q13.3	NCOA2	rs13260060-A	0.1	7E-7		1.1	[1.06-1.14]	Illumina [161311]	N
1128	chr8	71232886	71232887	rs7815798	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Uterine fibroids	14,475 East Asian ancestry cases, 65,733 East Asian ancestry controls	NA	8q13.3		rs7815798-G	0.551965393	1E-8		0.07838812	[0.051-0.105] unit increase	Illumina [13401454] (imputed)	N
1128	chr8	71260459	71260460	rs10504474	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	8q13.3	NCOA2	rs10504474-A	0.1043	2E-14		0.028	[0.021-0.035] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1128	chr8	71260459	71260460	rs10504474	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q13.3		rs10504474-G	NR	9E-7		0.026	unit increase	Affymetrix [at least 7091467] (imputed)	N
1128	chr8	71260459	71260460	rs10504474	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q13.3		rs10504474-G	0.896	4E-6	(EA)	0.028	unit increase	Affymetrix [at least 7091467] (imputed)	N
1128	chr8	71260459	71260460	rs10504474	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	265,204 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q13.3	NR	rs10504474-G	NR	4E-9		0.025	unit increase	Affymetrix [at least 7091467] (imputed)	N
1128	chr8	71265977	71265978	rs7841047	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Uterine fibroids	21,024 European ancestry cases, 237,694 European ancestry controls, 14,475 East Asian ancestry cases, 65,733 East Asian ancestry controls	NA	8q13.3		rs7841047-A	NR	2E-10		0.0651	[0.045-0.085] unit increase	Affymetrix, Illumina [25795146] (imputed)	N
1128	chr8	71267620	71267621	rs76718417	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	8q13.3	NR	rs76718417-?	NR	8E-7		4.926	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1129	chr8	71309712	71309713	rs11347613	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	8q13.3	NR	rs11347613-G	0.368	2E-12		0.888	[0.85-0.92]	Illumina [11270530] (imputed)	N
1129	chr8	71315856	71315856	rs202061918	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	8q13.3		rs202061918-CG	NR	3E-17		0.0213	[0.016-0.026] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
1129	chr8	71316596	71316597	rs6991199	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	118,886 East Asian ancestry individuals	NA	8q13.3		rs6991199-A	0.553136	2E-8		0.0222359	[0.015-0.03] unit increase	Illumina [13474352] (imputed)	N
1129	chr8	71320296	71320297	rs11776606	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	8q13.3		rs11776606-A	NR	1E-11		0.0284	[0.02-0.037] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
1129	chr8	71326614	71326615	rs11776287	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q13.3	NCOA2	rs11776287-A	0.893382	9E-15	(164 ms)	0.066485	[0.049-0.084] unit increase	Affymetrix [10000000] (imputed)	N
1129	chr8	71326614	71326615	rs11776287	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q13.3	NCOA2	rs11776287-A	0.893382	8E-12	(226 ms)	0.0592858	[0.041-0.077] unit increase	Affymetrix [10000000] (imputed)	N
1129	chr8	71326614	71326615	rs11776287	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q13.3	NCOA2	rs11776287-A	0.893382	8E-12	(222 ms)	0.0601213	[0.042-0.078] unit increase	Affymetrix [10000000] (imputed)	N
1129	chr8	71326614	71326615	rs11776287	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q13.3	NCOA2	rs11776287-A	0.893382	8E-11	(238 ms)	0.0564842	[0.039-0.074] unit increase	Affymetrix [10000000] (imputed)	N
1129	chr8	71326614	71326615	rs11776287	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q13.3	NCOA2	rs11776287-A	0.893382	7E-15	(186 ms)	0.0655857	[0.048-0.083] unit increase	Affymetrix [10000000] (imputed)	N
1129	chr8	71326614	71326615	rs11776287	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q13.3	NCOA2	rs11776287-A	0.893382	6E-14	(168 ms)	0.0643863	[0.047-0.082] unit increase	Affymetrix [10000000] (imputed)	N
1129	chr8	71326614	71326615	rs11776287	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q13.3	NCOA2	rs11776287-A	0.893382	5E-14	(166 ms)	0.0647695	[0.047-0.082] unit increase	Affymetrix [10000000] (imputed)	N
1129	chr8	71326614	71326615	rs11776287	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q13.3	NCOA2	rs11776287-A	0.893382	5E-12	(228 ms)	0.0603845	[0.043-0.078] unit increase	Affymetrix [10000000] (imputed)	N
1129	chr8	71326614	71326615	rs11776287	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q13.3	NCOA2	rs11776287-A	0.893382	5E-12	(110 ms)	0.0599125	[0.042-0.078] unit increase	Affymetrix [10000000] (imputed)	N
1129	chr8	71326614	71326615	rs11776287	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q13.3	NCOA2	rs11776287-A	0.893382	4E-14	(170 ms)	0.0647198	[0.047-0.082] unit increase	Affymetrix [10000000] (imputed)	N
1129	chr8	71326614	71326615	rs11776287	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q13.3	NCOA2	rs11776287-A	0.893382	4E-12	(230 ms)	0.0603339	[0.043-0.078] unit increase	Affymetrix [10000000] (imputed)	N
1129	chr8	71326614	71326615	rs11776287	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q13.3	NCOA2	rs11776287-A	0.893382	3E-15	(150 ms)	0.067349	[0.05-0.085] unit increase	Affymetrix [10000000] (imputed)	N
1129	chr8	71326614	71326615	rs11776287	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q13.3	NCOA2	rs11776287-A	0.893382	3E-13	(188 ms)	0.0618752	[0.044-0.08] unit increase	Affymetrix [10000000] (imputed)	N
1129	chr8	71326614	71326615	rs11776287	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q13.3	NCOA2	rs11776287-A	0.893382	3E-12	(224 ms)	0.0599262	[0.042-0.078] unit increase	Affymetrix [10000000] (imputed)	N
1129	chr8	71326614	71326615	rs11776287	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q13.3	NCOA2	rs11776287-A	0.893382	3E-11	(214 ms)	0.0569984	[0.039-0.075] unit increase	Affymetrix [10000000] (imputed)	N
1129	chr8	71326614	71326615	rs11776287	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q13.3	NCOA2	rs11776287-A	0.893382	2E-16	(148 ms)	0.0715001	[0.054-0.089] unit increase	Affymetrix [10000000] (imputed)	N
1129	chr8	71326614	71326615	rs11776287	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q13.3	NCOA2	rs11776287-A	0.893382	2E-14	(184 ms)	0.0651572	[0.047-0.083] unit increase	Affymetrix [10000000] (imputed)	N
1129	chr8	71326614	71326615	rs11776287	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q13.3	NCOA2	rs11776287-A	0.893382	2E-11	(232 ms)	0.0582475	[0.04-0.076] unit increase	Affymetrix [10000000] (imputed)	N
1129	chr8	71326614	71326615	rs11776287	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q13.3	NCOA2	rs11776287-A	0.893382	2E-11	(108 ms)	0.0584774	[0.041-0.076] unit increase	Affymetrix [10000000] (imputed)	N
1129	chr8	71326614	71326615	rs11776287	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q13.3	NCOA2	rs11776287-A	0.893382	2E-11	(106 ms)	0.0588315	[0.041-0.076] unit increase	Affymetrix [10000000] (imputed)	N
1129	chr8	71326614	71326615	rs11776287	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q13.3	NCOA2	rs11776287-A	0.893382	1E-11	(220 ms)	0.0592347	[0.041-0.077] unit increase	Affymetrix [10000000] (imputed)	N
1129	chr8	71326614	71326615	rs11776287	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q13.3	NCOA2	rs11776287-A	0.893382	1E-11	(212 ms)	0.0580814	[0.04-0.076] unit increase	Affymetrix [10000000] (imputed)	N
1129	chr8	71326614	71326615	rs11776287	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q13.3	NCOA2	rs11776287-A	0.893382	1E-10	(236 ms)	0.0564625	[0.039-0.074] unit increase	Affymetrix [10000000] (imputed)	N
1129	chr8	71334846	71334847	rs11775808	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	8q13.3	NR	rs11775808-C	NR	2E-9		0.016	[0.011-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
1129	chr8	71338184	71338185	rs10504477	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	8q13.3	NCOA2	rs10504477-T	0.587809	6E-15		0.0150542	[0.011-0.019] unit increase	Affymetrix [NR] (imputed)	N
1129	chr8	71338184	71338185	rs10504477	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	8q13.3	NCOA2	rs10504477-T	0.587709	1E-9		0.0121249	[0.0082-0.016] unit increase	Affymetrix [NR] (imputed)	N
1129	chr8	71347625	71347626	rs67436663	30718901	Howard DM	2019-02-04	Nat Neurosci	Genome-wide meta-analysis of depression identifies 102 independent variants and highlights the importance of the prefrontal brain regions.	Depression	118,811 European ancestry cases, 327,427 European ancestry controls, 127,552 cases, 233,763 controls	414,055 European ancestry cases, 892,299 European ancestry controls	8q13.3	NR	rs67436663-G	0.7598	3E-8		1.0141988	[1.01-1.02]	NR [8098588] (imputed)	N
1129	chr8	71348176	71348177	rs72665715	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	8q13.3	NR	rs72665715-A	0.134914	3E-17		0.023654	[0.018-0.029] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1129	chr8	71351951	71351952	rs13259522	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	8q13.3	ENSG00000241204	rs13259522-T	NR	1E-8		0.023313463	[0.015-0.031] unit increase	Affymetrix [NR]	N
1129	chr8	71352046	71352047	rs13259607	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Verbal-numerical reasoning	171,304 British ancestry individuals	NA	8q13.3		rs13259607-?	NR	1E-9				NR [7857346] (imputed)	N
1129	chr8	71352046	71352047	rs13259607	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	8q13.3	Intergenic	rs13259607-T	0.0998	4E-9	(MTAG)	0.0161	[0.011-0.022] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1129	chr8	71352046	71352047	rs13259607	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	8q13.3	Intergenic	rs13259607-T	0.0952	9E-10	(MTAG)	0.0239	[0.016-0.032] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1129	chr8	71352046	71352047	rs13259607	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	8q13.3	ENSG00000241204	rs13259607-T	NR	1E-9		0.02984095	[0.02-0.039] unit increase	Affymetrix [NR]	N
1129	chr8	71352112	71352113	rs16937025	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	8q13.3	NR	rs16937025-A	NR	3E-9		0.02	[0.013-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
1129	chr8	71359102	71359103	rs10091864	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels	18,590 European ancestry individuals, 3,806 African American individuals, 774 Chinese ancestry individuals, 1,446 Hispanics ancestry individuals	NA	8q13.3		rs10091864-?	NR	2E-19		0.07	[0.054-0.086] unit decrease	Affymetrix, Illumina [10661418] (imputed)	N
1129	chr8	71359659	71359660	rs10095625	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels	18,590 European ancestry individuals	NA	8q13.3		rs10095625-?	NR	4E-13		0.08	[0.058-0.102] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1129	chr8	71367005	71367006	rs1481045	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	8q13.3	ENSG00000253143	rs1481045-T	NR	7E-10		0.02374729	[0.016-0.031] unit decrease	Affymetrix [NR]	N
1129	chr8	71370391	71370392	rs79359966	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	8q13.3	NR	rs79359966-?	NR	1E-7		5.281	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1129	chr8	71371141	71371142	rs6472530	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	8q13.3	ENSG00000253143	rs6472530-A	NR	3E-8		0.017809175	[0.011-0.024] unit decrease	Affymetrix [NR]	N
1129	chr8	71371901	71371902	rs1481046	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	8q13.3	NR	rs1481046-?	NR	6E-7		0.0416	[0.025-0.058] unit decrease	Illumina [at least 560000] (imputed)	N
1129	chr8	71381165	71381166	rs10096078	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	8q13.3	NR	rs10096078-?	NR	5E-6		0.0965065	[0.055-0.138] unit decrease	NR [13958389] (imputed)	N
1129	chr8	71386903	71386904	rs10091374	23247143	Yu B	2012-12-16	Circ Cardiovasc Genet	Association of genome-wide variation with highly sensitive cardiac troponin-T levels in European Americans and Blacks: a meta-analysis from atherosclerosis risk in communities and cardiovascular health studies.	Cardiac Troponin-T levels	9,491 European ancestry individuals, up to 2,053 African American individuals	NA	8q13.3	TRAM1, NCOA2	rs10091374-A	NR	9E-9	(Continuous Variable)	0.043	[0.027-0.059] ug/L decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1129	chr8	71402827	71402828	rs6980853	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	8q13.3	NR	rs6980853-C		1E-14		0.09	[0.07-0.11] unit increase	NR [NR]	N
1129	chr8	71407058	71407059	rs28581409	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels	18,590 European ancestry individuals, 3,806 African American individuals, 774 Chinese ancestry individuals, 1,446 Hispanics ancestry individuals	NA	8q13.3		rs28581409-?	NR	7E-9		0.05	[0.034-0.066] unit decrease	Affymetrix, Illumina [10661418] (imputed)	N
1129	chr8	71408715	71408716	rs12548525	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8q13.3	NCOA2	rs12548525-?	NR	3E-6	(PC 36:5)	0.20287998	[0.12-0.29] unit increase	Affymetrix [at least 2500000] (imputed)	N
1129	chr8	71420066	71420067	rs28891973	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	8q13.3	NCOA2, TRAM1	rs28891973-A	0.4246	4E-10		6.27	[NR] z score increase	Affymetrix, Illumina [~ 11000000] (imputed)	N
1129	chr8	71423743	71423744	rs4738094	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	8q13.3	NCOA2, TRAM1	rs4738094-?		1E-26				Affymetrix, Illumina [NR] (imputed)	N
1130	chr8	71442113	71442114	rs7830997	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	8q13.3	LOC101926892	rs7830997-A	NR	9E-8		1.0625863	NR	Affymetrix, Illumina [8278136] (imputed)	N
1130	chr8	71474354	71474355	rs13251292	32060260	Campos AI	2020-02-14	Nat Commun	Insights into the aetiology of snoring from observational and genetic investigations in the UK Biobank.	Snoring	61,792 British ancestry female cases, 156,554 British ancestry female controls	NA	8q13.3	NR	rs13251292-A	NR	9E-10		0.00854	[0.0058-0.0113] unit decrease	NR [11010159] (imputed)	N
1130	chr8	71474354	71474355	rs13251292	32060260	Campos AI	2020-02-14	Nat Commun	Insights into the aetiology of snoring from observational and genetic investigations in the UK Biobank.	Snoring	152,302 British ancestry cases, 256,015 British ancestry controls	NA	8q13.3	NR	rs13251292-A	NR	4E-12		0.00737472	[0.0053-0.0095] unit decrease	NR [11010159] (imputed)	N
1130	chr8	71474354	71474355	rs13251292	32060260	Campos AI	2020-02-14	Nat Commun	Insights into the aetiology of snoring from observational and genetic investigations in the UK Biobank.	Snoring	151,836 British ancestry cases, 255,230 British ancestry controls	NA	8q13.3	NR	rs13251292-A	NR	2E-10	(adjusted for BMI)	0.00672	[0.0047-0.0088] unit decrease	NR [11010159] (imputed)	N
1130	chr8	71499108	71499109	rs61412217	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	8q13.3	NR	rs61412217-?	NR	2E-6		4.718	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1130	chr8	71544747	71544748	rs13272623	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	8q13.3	NR	rs13272623-G	0.155110978134761	4E-6	(IGP56)	0.2093	[0.12-0.3] unit increase	Illumina [~ 2500000] (imputed)	N
1130	chr8	71544747	71544748	rs13272623	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	8q13.3	NR	rs13272623-G	0.154915348909657	2E-6	(IGP7)	0.2155	[0.13-0.3] unit increase	Illumina [~ 2500000] (imputed)	N
1130	chr8	71544747	71544748	rs13272623	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	8q13.3	NR	rs13272623-G	0.154915348909657	2E-6	(IGP47)	0.218	[0.13-0.31] unit increase	Illumina [~ 2500000] (imputed)	N
1130	chr8	71555912	71555913	rs7007887	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Snoring	359,916 European ancestry individuals	NA	8q13.3	NR	rs7007887-T	0.4339	1E-13		1.04	[1.03-1.05]	Affymetrix, Illumina [10862568] (imputed)	N
1130	chr8	71564666	71564667	rs441890	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	8q13.3	NR	rs441890-T	0.5717	5E-9	(Pars Opercularis)	5.9024067	[3.92-7.88] unit increase	Affymetrix, Illumina [NR]	N
1131	chr8	71569259	71569260	rs71523192	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8q13.3	NR	rs71523192-A	0.01394	2E-8	(TNC)	0.05352	NR unit increase	Illumina [1671387] (imputed)	N
1131	chr8	71572072	71572073	rs35580034	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	8q13.3	LACTB2	rs35580034-A	0.52184842134076	6E-6		0.002428	[NR] unit increase	Affymetrix [> 30000000] (imputed)	N
1131	chr8	71579909	71579910	rs72667712	25839716	Ng E	2015-04-02	Environ Res	Genome-wide association study of plasma levels of polychlorinated biphenyls disclose an association with the CYP2B6 gene in a population-based sample.	Polychlorinated biphenyl levels	922 European ancestry individuals	NA	8q13.3	NR	rs72667712-?		5E-7	(PCB194)	0.74	[0.45-1.03] unit decrease	Illumina [8736858] (imputed)	N
1131	chr8	71591202	71591203	rs7017914	22504420	Estrada K	2012-04-15	Nat Genet	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Femoral neck bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	8q13.3	XKR9	rs7017914-A	0.49	2E-7		0.03	[NR] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1131	chr8	71593197	71593198	rs12681420	27005419	Borne Y	2016-03-22	Hum Mol Genet	Genome wide association study identifies two loci associated with cadmium in erythrocytes among never-smokers.	Erythrocyte cadmium concentration in never smokers	1,728 individuals	NA	8q13.3	XKR9, LACTB2, TRAM1	rs12681420-G	0.4617	3E-11		0.11	[NR] unit decrease	Illumina [658884]	N
1131	chr8	71599630	71599630	rs60787187	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	8q13.3	XKR9	rs60787187-TTC	NR	2E-8		0.0172474	[0.011-0.023] unit increase	Affymetrix [321169] (imputed)	N
1131	chr8	71610254	71610255	rs13254770	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8q13.3	XKR9	rs13254770-C	NR	3E-8		0.0157965	[0.01-0.021] unit increase	Affymetrix [321114] (imputed)	N
1131	chr8	71648842	71648843	rs11781353	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in diabetes mellitus	153 Korean ancestry cases, 5,161 Korean ancestry controls	NA	8q13.3		rs11781353-G	0.3673	5E-6		0.539	[0.413-0.7036]	Affymetrix [7975321] (imputed)	N
1131	chr8	71682582	71682583	rs1838392	33888516	Zheng T	2021-04-22	Gut	Genome-wide analysis of 944 133 individuals provides insights into the etiology of haemorrhoidal disease.	Haemorrhoidal disease	218,920 European ancestry cases, 725,213 European ancestry controls	NA	8q13.3	XKR9	rs1838392-T	0.3902	5E-39		1.05	[1.05-1.06]	Affymetrix, Illumina [8494288] (imputed)	N
1131	chr8	71691528	71691529	rs62508768	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	8q13.3		rs62508768-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1132	chr8	71701964	71701964	rs112418994	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	8q13.3	XKR9	rs112418994-A	NR	1E-10		0.0182996	[0.013-0.024] unit increase	Affymetrix [321169] (imputed)	N
1132	chr8	71731361	71731362	rs79318126	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	8q13.3	NR	rs79318126-?	NR	2E-6		4.8	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1132	chr8	71789145	71789146	rs7003794	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	8q13.3		rs7003794-?	NR	5E-42		0.0272338	[0.023-0.031] unit increase	Affymetrix [20259828] (imputed)	N
1132	chr8	71789145	71789146	rs7003794	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	8q13.3	XKR9	rs7003794-C	0.396943	3E-9	(men)	0.0294224	[0.019-0.04] unit increase	NR [17166351] (imputed)	N
1132	chr8	71789145	71789146	rs7003794	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	8q13.3	XKR9	rs7003794-C	0.39582	6E-17		0.0289674	[0.022-0.036] unit increase	NR [17166351] (imputed)	N
1132	chr8	71789145	71789146	rs7003794	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	8q13.3	XKR9	rs7003794-C	0.39484	8E-9	(women)	0.0280661	[0.019-0.037] unit increase	NR [17166351] (imputed)	N
1132	chr8	71816254	71816255	rs3098897	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in diabetes mellitus	153 Korean ancestry cases, 5,161 Korean ancestry controls	NA	8q13.3		rs3098897-C	0.3795	1E-5		0.5569	[0.4298-0.7217]	Affymetrix [7975321] (imputed)	N
1133	chr8	71847336	71847336	rs71566263	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 11)	19,670 European ancestry individuals	NA	8q13.3		rs71566263-?	NR	4E-8				NR [9705931] (imputed)	N
1133	chr8	71866279	71866280	rs2639935	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	8q13.3		rs2639935-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1133	chr8	71872494	71872495	rs75684954	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		AC015687.1	rs75684954-?	NR	3E-11	(female)	0.636649	[NR] unit increase	Affymetrix [NR] (imputed)	N
1133	chr8	71912538	71912539	rs2639945	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	8q13.3		rs2639945-T	0.43	2E-8		5.62	z score increase	Affymetrix [9061022] (imputed)	N
1133	chr8	71913559	71913560	rs2035927	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	8q13.3		rs2035927-G	0.43	3E-8		5.57	z score increase	Affymetrix [9061022] (imputed)	N
1133	chr8	71919569	71919570	rs1018015	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in diabetes mellitus	153 Korean ancestry cases, 5,161 Korean ancestry controls	NA	8q13.3		rs1018015-T	0.3776	7E-6		0.551	[0.4247-0.7149]	Affymetrix [7975321] (imputed)	N
1133	chr8	71925659	71925660	rs2639953	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	8q13.3	EYA1	rs2639953-G	0.478438	2E-46		0.0265721	[0.023-0.03] unit increase	NR [13737936] (imputed)	N
1133	chr8	71930414	71930415	rs3098871	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	8q13.3		rs3098871-?	NR	5E-52				NR [~ 8900000] (imputed)	N
1133	chr8	71933787	71933788	rs34515576	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	8q13.3		rs34515576-?	NR	5E-47		0.0285866	[0.024-0.033] unit increase	Affymetrix [20259828] (imputed)	N
1133	chr8	71945273	71945274	rs12675159	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	8q13.3	NR	rs12675159-A	0.3243	9E-10		0.0129	[0.0088-0.017] unit increase	NR [~ 27400000] (imputed)	N
1134	chr8	71961025	71961026	rs17698944	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	8q13.3	RP11-326E22.1	rs17698944-A	NR	1E-8		0.0306791	[0.02-0.041] unit increase	Affymetrix [323123] (imputed)	N
1134	chr8	71980629	71980630	rs10504493	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	8q13.3	RP11-326E22.1	rs10504493-A	NR	5E-8		0.0227155	[0.015-0.031] unit increase	Affymetrix [323123] (imputed)	N
1134	chr8	71981714	71981715	rs62506039	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	8q13.3	NR	rs62506039-?	NR	7E-11				Affymetrix [~ 8270000] (imputed)	N
1134	chr8	71989718	71989719	rs1481801	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	8q13.3		rs1481801-?	NR	3E-11				NR [~ 8900000] (imputed)	N
1134	chr8	71999031	71999032	rs7837005	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	8q13.3	NR	rs7837005-?	NR	1E-10				Affymetrix [~ 8270000] (imputed)	N
1134	chr8	72001739	72001739	rs35806380	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8q13.3	RP11-326E22.1	rs35806380-G	NR	3E-8		0.0164336	[0.011-0.022] unit increase	Affymetrix [321114] (imputed)	N
1134	chr8	72001739	72001739	rs35806380	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	8q13.3	RP11-326E22.1	rs35806380-G	NR	1E-10		0.0192095	[0.013-0.025] unit increase	Affymetrix [321169] (imputed)	N
1134	chr8	72001930	72001931	rs13251367	34075027	Gonda X	2021-06-01	Transl Psychiatry	Genetic underpinnings of affective temperaments: a pilot GWAS investigation identifies a new genome-wide significant SNP for anxious temperament in ADGRB3 gene.	Anxious temperament	775 European ancestry individuals	NA	8q13.3		rs13251367-A	NR	3E-6		0.03391	unit increase	Illumina [2550710] (imputed)	N
1134	chr8	72008302	72008303	rs10957534	34957435	Bonfiglio F	2021-12-08	Cell Genom	GWAS of stool frequency provides insights into gastrointestinal motility and irritable bowel syndrome.	Stool frequency	167,875 European ancestry individuals	NA	8q13.3		rs10957534-C	0.367	1E-8		0.016	[0.01-0.022] unit decrease	Affymetrix, Illumina [8817117] (imputed)	N
1134	chr8	72012330	72012331	rs1383978	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	8q13.3	RP11-326E22.1	rs1383978-A	NR	1E-8		0.0178355	[0.012-0.024] unit increase	Affymetrix [319769] (imputed)	N
1134	chr8	72012330	72012331	rs1383978	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	8q13.3	RP11-326E22.1	rs1383978-A	NR	5E-9		0.0183756	[0.012-0.025] unit increase	Affymetrix [319769] (imputed)	N
1134	chr8	72030201	72030202	rs6993194	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque score in type 2 diabetes	691 African American individuals	205 African American individuals	8q13.3	intergenic	rs6993194-?	NR	4E-6		1.93	[0.88-2.98] unit decrease	Illumina [at least 13000000] (imputed)	N
1134	chr8	72033424	72033425	rs1481805	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (90 or 130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	8q13.3	intergenic	rs1481805-?	NR	1E-6		0.347	[0.16-0.53] unit decrease	Illumina [at least 13000000] (imputed)	N
1134	chr8	72036903	72036904	rs10504499	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Chin dimples	58,032 European ancestry cases, 13,457 European ancestry controls	NA	8q13.3	XKR9, EYA1	rs10504499-?	NR	8E-34		1.292	[1.240-1.346]	Illumina [13537761] (imputed)	N
1134	chr8	72077954	72077955	rs16937456	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	8q13.3	NR	rs16937456-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
1134	chr8	72077954	72077955	rs16937456	25108383	Geller F	2014-08-10	Nat Genet	Genome-wide association analyses identify variants in developmental genes associated with hypospadias.	Hypospadias	1,006 European ancestry male child cases, 2,390 European ancestry male child controls, 3,096 European ancestry female child controls	1,972 European ancestry male child cases, 1,401 European ancestry male child controls, 405 European ancestry female child controls, 6 European ancestry child controls	8q13.3	EYA1	rs16937456-G	0.124	2E-12		1.4	[NR]	Illumina [8207076] (imputed)	N
1134	chr8	72083962	72083963	rs1481814	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	8q13.3		rs1481814-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1134	chr8	72086196	72086197	rs16937474	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	8q13.3	NR	rs16937474-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
1134	chr8	72088170	72088171	rs737534	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	8q13.3	EYA1	rs737534-A	0.812462	8E-15		0.0186437	[0.014-0.023] unit increase	NR [13737936] (imputed)	N
1134	chr8	72088170	72088171	rs737534	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	8q13.3		rs737534-?	NR	4E-10		0.0159735	[0.011-0.021] unit increase	Affymetrix [20259828] (imputed)	N
1135	chr8	72100324	72100325	rs72622838	28352666	Liu TC	2017-03-23	JCI Insight	LRRK2 but not ATG16L1 is associated with Paneth cell defect in Japanese Crohn's disease patients.	Paneth cell defects in Crohn's disease	98 Japanese ancestry cases	NA	8q13.3	EYA1	rs72622838-A	NR	3E-6		4.181	unit decrease	Affymetrix [4198245] (imputed)	N
1135	chr8	72111677	72111678	rs10090382	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	8q13.3		rs10090382-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1135	chr8	72114775	72114776	rs12678747	34864618	Bourgeois S	2021-12-02	EBioMedicine	Genome-Wide association between EYA1 and Aspirin-induced peptic ulceration.	NSAID-induced peptic ulcer disease	235 European ancestry cases, 441 European ancestry controls	206 European ancestry cases, 309 European ancestry controls	8q13.3		rs12678747-T	NR	3E-11		2.03	[1.65-2.5]	Illumina [5548084] (imputed)	N
1135	chr8	72185923	72185924	rs10504504	31533690	Orlova E	2019-09-18	BMC Oral Health	Pilot GWAS of caries in African-Americans shows genetic heterogeneity.	Dental caries (decayed and filled deciduous teeth)	96 African American children	NA	8q13.3	NR	rs10504504-?		3E-6		4.624	[3.11-6.14] unit increase	Illumina [~ 4900000] (imputed)	N
1135	chr8	72199229	72199230	rs566067181	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	8q13.3	NR	rs566067181-T	0.999393	2E-12		2.4523	[1.77-3.13] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1135	chr8	72217902	72217903	rs114847962	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	8q13.3		rs114847962-?	NR	6E-40		0.0306377	[0.026-0.035] unit increase	Affymetrix [20259828] (imputed)	N
1135	chr8	72217902	72217903	rs114847962	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	8q13.3	EYA1	rs114847962-A	0.742164	4E-7	(women)	0.026212	[0.016-0.037] unit increase	NR [17166351] (imputed)	N
1135	chr8	72217902	72217903	rs114847962	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	8q13.3	EYA1	rs114847962-A	0.741418	4E-18		0.0314611	[0.024-0.039] unit increase	NR [17166351] (imputed)	N
1135	chr8	72217902	72217903	rs114847962	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	8q13.3	EYA1	rs114847962-A	0.740564	1E-12	(men)	0.0374555	[0.026-0.049] unit increase	NR [17166351] (imputed)	N
1135	chr8	72218779	72218780	rs553911686	33602968	Skuladottir AT	2021-02-18	Sci Rep	A meta-analysis uncovers the first sequence variant conferring risk of Bell's palsy.	Bell's palsy	4,714 European ancestry cases, 1,011,520 European ancestry controls	NA	8q13.3	EYA1	rs553911686-A	9.0E-4	1E-6		3.1699	NR	Affymetrix, Illumina [30341632] (imputed)	N
1135	chr8	72219698	72219699	rs7830123	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	8q13.3	EYA1	rs7830123-A	0.743876	9E-47		0.0306935	[0.027-0.035] unit increase	NR [13737936] (imputed)	N
1135	chr8	72219698	72219699	rs7830123	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	8q13.3		rs7830123-?	NR	2E-44				NR [~ 8900000] (imputed)	N
1135	chr8	72219698	72219699	rs7830123	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	8q13.3		rs7830123-?	NR	4E-40		0.0306453	[0.026-0.035] unit increase	Affymetrix [20259828] (imputed)	N
1136	chr8	72253073	72253074	rs4737316	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Large artery stroke	350 Indian ancestry cases, 2,154 Indian ancestry controls	NA	8q13.3		rs4737316-?	NR	9E-6		1.0430197	[1.02381837729812-1.06258094067039]	Illumina [up to 7827597] (imputed)	N
1136	chr8	72263955	72263956	rs2218488	17903308	Gottlieb DJ	2007-09-19	BMC Med Genet	Genome-wide association of sleep and circadian phenotypes.	Sleep-related phenotypes	up to 738 individuals from 203 families	NA	8q13.3	EYA1	rs2218488-?	NR	3E-6	(Sleepiness)			Affymetrix [70897]	N
1136	chr8	72270081	72270082	rs7006821	23144326	Kim DK	2012-11-09	Am J Respir Crit Care Med	Genome-wide association analysis of blood biomarkers in chronic obstructive pulmonary disease.	Chronic obstructive pulmonary disease-related biomarkers	Up to 1,951 European ancestry smokers	NA	8q13.3	EYA1	rs7006821-C	0.07	5E-6	(IL8)			Illumina [588352]	N
1136	chr8	72278009	72278010	rs12543430	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (multi-trait analysis)	90,939 European ancestry individuals	NA	8q13.3	EYA1, MSC	rs12543430-T	0.39	6E-10		0.0055	NR unit decrease	Affymetrix, Illumina [8002429] (imputed)	N
1136	chr8	72278009	72278010	rs12543430	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (adjusted for vertical disc diameter)	67,040 British ancestry individuals	NA	8q13.3	EYA1	rs12543430-T	0.39	2E-9		0.00548	[0.0037-0.0073] unit decrease	Affymetrix [at least 8002429] (imputed)	N
1136	chr8	72294587	72294588	rs10957550	24688116	Deelen J	2014-03-31	Hum Mol Genet	Genome-wide association meta-analysis of human longevity identifies a novel locus conferring survival beyond 90 years of age.	Longevity (85 years and older)	7,729 European ancestry cases, 16,121 European ancestry controls	13,060 European ancestry cases, 61,156 European ancestry controls	8q13.3	EYA1	rs10957550-?	0.756	1E-6		1.09	[1.05-1.11]	Illumina [2480356] (imputed)	N
1136	chr8	72318670	72318671	rs576508114	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q13.3	NR	rs576508114-C	0.00212826	4E-14				Affymetrix, Illumina [24588908] (imputed)	N
1137	chr8	72386393	72386394	rs146492163	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	8q13.3	RP11-1102P16.1	rs146492163-T	NR	3E-8		0.0463001	[0.03-0.063] unit increase	Affymetrix [319769] (imputed)	N
1137	chr8	72386393	72386394	rs146492163	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8q13.3	RP11-1102P16.1	rs146492163-T	NR	1E-8		0.0520969	[0.034-0.07] unit increase	Affymetrix [323858] (imputed)	N
1137	chr8	72386393	72386394	rs146492163	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	8q13.3	RP11-1102P16.1	rs146492163-T	NR	3E-8		0.0465241	[0.03-0.063] unit increase	Affymetrix [319769] (imputed)	N
1137	chr8	72386393	72386394	rs146492163	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8q13.3	RP11-1102P16.1	rs146492163-T	NR	4E-8		0.0505505	[0.033-0.069] unit increase	Affymetrix [127266] (imputed)	N
1137	chr8	72386393	72386394	rs146492163	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	8q13.3	RP11-1102P16.1	rs146492163-T	NR	5E-9		0.0493823	[0.033-0.066] unit increase	Affymetrix [321169] (imputed)	N
1137	chr8	72390481	72390482	rs4131682	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8q13.3	RP11-1102P16.1	rs4131682-G	NR	2E-8		0.016048	[0.01-0.022] unit decrease	Affymetrix [321114] (imputed)	N
1137	chr8	72390481	72390482	rs4131682	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	8q13.3	RP11-1102P16.1	rs4131682-G	NR	2E-9		0.0172147	[0.012-0.023] unit decrease	Affymetrix [321169] (imputed)	N
1137	chr8	72394520	72394521	rs35395764	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8q13.3	RP11-1102P16.1	rs35395764-A	NR	1E-8		0.0204913	[0.013-0.028] unit decrease	Affymetrix [321114] (imputed)	N
1137	chr8	72394520	72394521	rs35395764	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	8q13.3	RP11-1102P16.1	rs35395764-A	NR	7E-10		0.0223104	[0.015-0.029] unit decrease	Affymetrix [321169] (imputed)	N
1137	chr8	72394990	72394991	rs4263799	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	8q13.3		rs4263799-T	0.5	2E-9		6.01	z score increase	Affymetrix [9061022] (imputed)	N
1137	chr8	72396212	72396213	rs28446899	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	8q13.3	NA	rs28446899-T	0.078	8E-23		0.0362	[0.029-0.043] unit increase	NR [~ 27400000] (imputed)	N
1137	chr8	72397810	72397810	rs555234816	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	8q13.3	NR	rs555234816-T	0.922516	1E-15		0.0183708	[0.014-0.023] unit increase	Affymetrix [16585854] (imputed)	N
1137	chr8	72397810	72397810	rs555234816	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	8q13.3	NR	rs555234816-T	0.922516	2E-10		0.0171481	[0.012-0.022] unit increase	Affymetrix [16585866] (imputed)	N
1137	chr8	72399218	72399219	rs528968210	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (hospitalized covid vs population)	613 European ancestry cases, 680,416 European ancestry controls, 140 Hispanic or Latin American cases, 94,327 Hispanic or Latin American controls, 49 Black or African American cases, 22,410 Black or African American controls	NA	8q13.3		rs528968210-?	NR	2E-6		1.513429	[0.9-2.13] unit increase	Illumina [9875426] (imputed)	N
1137	chr8	72399622	72399623	rs36096231	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	8q13.3	RP11-1102P16.1	rs36096231-T	NR	1E-25		0.0566505	[0.046-0.067] unit increase	Affymetrix [319769] (imputed)	N
1137	chr8	72399622	72399623	rs36096231	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	8q13.3	RP11-1102P16.1	rs36096231-T	NR	2E-26		0.0574984	[0.047-0.068] unit increase	Affymetrix [319769] (imputed)	N
1137	chr8	72399622	72399623	rs36096231	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	8q13.3	RP11-1102P16.1	rs36096231-T	NR	1E-27		0.0595309	[0.049-0.07] unit increase	Affymetrix [321169] (imputed)	N
1137	chr8	72399622	72399623	rs36096231	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	8q13.3	RP11-1102P16.1	rs36096231-C	0.927521	4E-8		0.020767	[0.013-0.028] unit increase	Affymetrix [NR] (imputed)	N
1137	chr8	72400179	72400180	rs59921208	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	8q13.3	NR	rs59921208-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
1137	chr8	72407373	72407374	rs10101067	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	8q13.3	NR	rs10101067-G	0.9141	1E-8		0.0391	[0.026-0.053] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1137	chr8	72407373	72407374	rs10101067	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	Triglyceride levels x smoking (ever vs never smokers) interaction (2df test)	11,735 African ancestry ever smoker individuals, 1,172 Asian ancestry ever smoker individuals, 42,899 European ancestry ever smoker individuals, 2,582 Hispanic ever smoker individuals, 11,777 African ancestry never smoker individuals, 3,477 Asian ancestry never smoker individuals, 34,148 European ancestry never smoker individuals, 4,123 Hispanic never smoker individuals	1,710 African ancestry ever smoker individuals, 54,217 Asian ancestry ever smoker individuals, 11,550 European ancestry ever smoker individuals, 5,915 Hispanic ever smoker individuals, 2,040 African ancestry never smoker individuals, 57,704 Asian ancestry never smoker individuals, 47,916 European ancestry never smoker individuals, 8,795 Hispanic never smoker individuals	8q13.3		rs10101067-C	0.08	1E-6				Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1137	chr8	72407373	72407374	rs10101067	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	Triglyceride levels x smoking (current vs non smokers) interaction (2df test)	5,022 African ancestry current smoker individuals, 808 Asian ancestry current smoker individuals, 13,303 European ancestry current smoker individuals, 764 Hispanic current smoker individuals, 18,489 African ancestry non smoker individuals, 3,841 Asian ancestry non smoker individuals, 63,740 European ancestry non smoker individuals, 5,941 Hispanic non smoker individuals	1,367 African ancestry current smoker individuals, 22,744 Asian ancestry current smoker individuals, 22,268 European ancestry current smoker individuals, 2,899 Hispanic current smoker individuals, 3,989 African ancestry non smoker individuals, 89,177 Asian ancestry non smoker individuals, 86,885 European ancestry non smoker individuals, 11,811 Hispanic non smoker individuals	8q13.3		rs10101067-C	0.08	4E-8		0.0092	[-0.00119-0.01959] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1137	chr8	72407373	72407374	rs10101067	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	Triglyceride levels x smoking (current vs non smokers) interaction (2df test)	5,022 African ancestry current smoker individuals, 808 Asian ancestry current smoker individuals, 13,303 European ancestry current smoker individuals, 764 Hispanic current smoker individuals, 18,489 African ancestry non smoker individuals, 3,841 Asian ancestry non smoker individuals, 63,740 European ancestry non smoker individuals, 5,941 Hispanic non smoker individuals	1,367 African ancestry current smoker individuals, 22,744 Asian ancestry current smoker individuals, 22,268 European ancestry current smoker individuals, 2,899 Hispanic current smoker individuals, 3,989 African ancestry non smoker individuals, 89,177 Asian ancestry non smoker individuals, 86,885 European ancestry non smoker individuals, 11,811 Hispanic non smoker individuals	8q13.3		rs10101067-?	NR	6E-7		0.0178	[0.00012-0.03548] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1137	chr8	72407373	72407374	rs10101067	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	Triglyceride levels in non smokers	18,489 African ancestry individuals, 3,841 Asian ancestry individuals, 63,740 European ancestry individuals, 5,941 Hispanic individuals	NA	8q13.3		rs10101067-?	NR	1E-6		0.0243	[0.014-0.034] unit increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1137	chr8	72407373	72407374	rs10101067	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	Triglyceride levels	up to 23,508 African ancestry individuals, 4,649 Asian ancestry individuals, up to 77,047 European ancestry individuals, 6,705 Hispanic individuals	NA	8q13.3		rs10101067-?	NR	3E-6		0.0216	[0.013-0.031] unit increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1137	chr8	72407373	72407374	rs10101067	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	8q13.3	NR	rs10101067-C	0.0711	6E-34		0.0414	[0.035-0.048] unit increase	NR [~ 27400000] (imputed)	N
1137	chr8	72407373	72407374	rs10101067	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	8q13.3	NR	rs10101067-C	0.0711	9E-23		0.0332	[0.027-0.04] unit increase	NR [~ 27400000] (imputed)	N
1137	chr8	72407664	72407665	rs4738139	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	8q13.3	RP11-1102P16.1	rs4738139-G	NR	7E-10		0.0178943	[0.012-0.024] unit increase	Affymetrix [319769] (imputed)	N
1137	chr8	72407664	72407665	rs4738139	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	8q13.3	RP11-1102P16.1	rs4738139-G	NR	2E-9		0.0173892	[0.012-0.023] unit increase	Affymetrix [319769] (imputed)	N
1137	chr8	72407664	72407665	rs4738139	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8q13.3	RP11-1102P16.1	rs4738139-G	NR	2E-9		0.0175546	[0.012-0.023] unit increase	Affymetrix [321114] (imputed)	N
1137	chr8	72407664	72407665	rs4738139	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	8q13.3	RP11-1102P16.1	rs4738139-G	NR	1E-10		0.0189884	[0.013-0.025] unit increase	Affymetrix [321169] (imputed)	N
1137	chr8	72414288	72414289	rs7014001	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8q13.3	RP11-1102P16.1	rs7014001-C	NR	2E-8		0.0334936	[0.022-0.045] unit increase	Affymetrix [323858] (imputed)	N
1137	chr8	72414288	72414289	rs7014001	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8q13.3	RP11-1102P16.1	rs7014001-C	NR	5E-8		0.0327864	[0.021-0.045] unit increase	Affymetrix [127266] (imputed)	N
1137	chr8	72419497	72419498	rs10096191	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	8q13.3	EYA1, MSC	rs10096191-G	0.08	4E-10		6.27	z-score increase	Affymetrix [4314223] (imputed)	N
1137	chr8	72419497	72419498	rs10096191	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	8q13.3	EYA1, MSC	rs10096191-G	0.08	5E-8		5.46	z-score increase	Affymetrix [4312306] (imputed)	N
1137	chr8	72419497	72419498	rs10096191	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	8q13.3	NR	rs10096191-?	NR	6E-34				Affymetrix [~ 8270000] (imputed)	N
1137	chr8	72419497	72419498	rs10096191	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	8q13.3	NR	rs10096191-?	NR	5E-26				Affymetrix [~ 8270000] (imputed)	N
1137	chr8	72429942	72429942	rs377346776	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	8q13.3	RP11-1102P16.1	rs377346776-CTATA	NR	7E-27		0.0469601	[0.038-0.056] unit increase	Affymetrix [319769] (imputed)	N
1137	chr8	72429942	72429942	rs377346776	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8q13.3	RP11-1102P16.1	rs377346776-CTATA	NR	9E-9		0.0279198	[0.018-0.037] unit increase	Affymetrix [323858] (imputed)	N
1137	chr8	72429942	72429942	rs377346776	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	8q13.3	RP11-1102P16.1	rs377346776-CTATA	NR	2E-27		0.0475568	[0.039-0.056] unit increase	Affymetrix [319769] (imputed)	N
1137	chr8	72429942	72429942	rs377346776	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8q13.3	RP11-1102P16.1	rs377346776-CTATA	NR	5E-9		0.0284585	[0.019-0.038] unit increase	Affymetrix [127266] (imputed)	N
1137	chr8	72429942	72429942	rs377346776	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	8q13.3	RP11-1102P16.1	rs377346776-CTATA	NR	3E-30		0.0505276	[0.042-0.059] unit increase	Affymetrix [321169] (imputed)	N
1137	chr8	72447308	72447308	rs34082903	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	8q13.3		rs34082903-C	0.922947	4E-8		0.0400484	[0.026-0.054] unit decrease	NR [11722792] (imputed)	N
1137	chr8	72447308	72447308	rs34082903	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	8q13.3		rs34082903-CT	NR	7E-16		0.0351	[0.027-0.044] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
1137	chr8	72447308	72447308	rs34082903	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	8q13.3		rs34082903-CT	NR	8E-11		0.0277	[0.019-0.036] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
1137	chr8	72447308	72447308	rs34082903	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	8q13.3		rs34082903-CT	NR	2E-15		0.0341	[0.026-0.043] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
1137	chr8	72447308	72447308	rs34082903	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	8q13.3		rs34082903-CT	NR	1E-12		0.0296	[0.021-0.038] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
1137	chr8	72447308	72447308	rs34082903	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Aspartate aminotransferase levels	386,570 British ancestry individuals, 10,617 Asian or Asian British individuals, 7,426 Black or Black British individuals, 2,321 Chinese ancestry individuals	NA	8q13.3	EYA1	rs34082903-?	NR	2E-16		0.0041	[0.0031-0.0051] unit increase	Affymetrix [21347608] (imputed)	N
1137	chr8	72447308	72447308	rs34082903	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Alanine aminotransferase levels	387,859 British ancestry individuals, 10,635 Asian or Asian British individuals, 7,468 Black or Black British individuals, 2,338 Chinese ancestry individuals	NA	8q13.3	EYA1	rs34082903-?	NR	1E-12		0.0061	[0.0045-0.0077] unit increase	Affymetrix [21347608] (imputed)	N
1137	chr8	72447417	72447418	rs13263568	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NA	8q13.3	intergenic	rs13263568-G	0.09	2E-6		1.1	[1.06-1.14]	Affymetrix, Illumina [~ 2300000] (imputed)	N
1137	chr8	72454048	72454049	rs10097671	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8q13.3	RP11-1102P16.1	rs10097671-T	NR	2E-27		0.0569673	[0.047-0.067] unit increase	Affymetrix [321114] (imputed)	N
1137	chr8	72459888	72459889	rs13269725	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	8q13.3	RP11-1102P16.1	rs13269725-A	0.921584	4E-21		0.034783	[0.028-0.042] unit decrease	Affymetrix [NR] (imputed)	N
1137	chr8	72459888	72459889	rs13269725	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	8q13.3	RP11-1102P16.1	rs13269725-A	0.921659	2E-13		0.0259348	[0.019-0.033] unit increase	Affymetrix [NR] (imputed)	N
1137	chr8	72459888	72459889	rs13269725	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	8q13.3	intergenic	rs13269725-?	NR	4E-15		0.0379	[0.029-0.046] unit increase	Affymetrix [5701386] (imputed)	N
1137	chr8	72459888	72459889	rs13269725	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	8q13.3	NR	rs13269725-A	0.921111	2E-8		0.0300107	[0.02-0.04] unit increase	Affymetrix [16580851] (imputed)	N
1137	chr8	72460791	72460792	rs35988618	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	8q13.3	EYA1	rs35988618-G	0.721708	2E-9		0.0124204	[0.0084-0.0165] unit increase	NR [13737936] (imputed)	N
1137	chr8	72460791	72460792	rs35988618	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	8q13.3		rs35988618-?	NR	3E-15				NR [~ 8900000] (imputed)	N
1137	chr8	72460791	72460792	rs35988618	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	8q13.3		rs35988618-?	NR	9E-12		0.0156108	[0.011-0.02] unit increase	Affymetrix [20259828] (imputed)	N
1137	chr8	72466323	72466324	rs745578	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex x age interaction (4df test)	up to 43,776 European ancestry men aged <50, up to 50,526 European ancestry women aged <50, up to 69,944 European ancestry men aged >50, up to 88,129 European ancestry women aged >50	NA	8q13.3	EYA1, MSC, RNU6-83, LOC100132891, TRPA1	rs745578-A	0.2437	6E-7				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1137	chr8	72466323	72466324	rs745578	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	8q13.3	EYA1, MSC, RNU6-83, LOC100132891, TRPA1	rs745578-A	0.243701	3E-7		0.0298	units increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1137	chr8	72467725	72467726	rs13260920	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	8q13.3		rs13260920-G	0.06	6E-12		6.88	z score increase	Affymetrix [9061022] (imputed)	N
1137	chr8	72469241	72469241	rs11390479	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8q13.3	RP11-1102P16.1	rs11390479-AG	NR	3E-26		0.0348439	[0.028-0.041] unit increase	Affymetrix [321114] (imputed)	N
1137	chr8	72469241	72469241	rs11390479	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	8q13.3	RP11-1102P16.1	rs11390479-AG	NR	9E-28		0.0359706	[0.03-0.042] unit increase	Affymetrix [321169] (imputed)	N
1137	chr8	72469244	72469244	rs397714631	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-to-hip ratio adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,049 whole genome sequenced individuals, 29,518 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,001 Mylopotamos (founder/genetic isolate) individuals, 867 Pomak (founder/genetic isolate) individuals	206,045 European ancestry individuals	8q13.3	RP11-1102P16.1	rs397714631-A	0.7362	6E-6		0.0418	[0.024-0.06] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1137	chr8	72469741	72469742	rs4738141	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8q13.3	RP11-1102P16.1	rs4738141-G	NR	1E-9		0.0218228	[0.015-0.029] unit increase	Affymetrix [323858] (imputed)	N
1137	chr8	72469741	72469742	rs4738141	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	8q13.3	RP11-1102P16.1	rs4738141-G	0.254684	7E-19		0.022747941	[0.018-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1137	chr8	72469741	72469742	rs4738141	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	8q13.3	RP11-1102P16.1	rs4738141-G	0.254695	5E-19		0.022857118	[0.018-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1137	chr8	72469741	72469742	rs4738141	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	8q13.3	RP11-1102P16.1	rs4738141-G	0.254733	6E-23		0.025250252	[0.02-0.03] unit increase	Affymetrix [93095623] (imputed)	N
1137	chr8	72469741	72469742	rs4738141	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	8q13.3	RP11-1102P16.1	rs4738141-G	0.254728	4E-23		0.025362551	[0.02-0.03] unit increase	Affymetrix [93095623] (imputed)	N
1137	chr8	72469741	72469742	rs4738141	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	8q13.3	NR	rs4738141-G	0.24	8E-42		0.028	[0.024-0.032] unit increase	Affymetrix [2446094] (imputed)	N
1137	chr8	72469741	72469742	rs4738141	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	8q13.3	NR	rs4738141-G	0.24	5E-8				Affymetrix [2446094] (imputed)	N
1137	chr8	72469741	72469742	rs4738141	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	8q13.3	RP11-1102P16.1	rs4738141-A	0.6374	1E-9		0.0149	[0.01-0.0198] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1137	chr8	72469741	72469742	rs4738141	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	8q13.3	MSC	rs4738141-G	0.24980000000000002	8E-6	(men)	0.0281	[0.016-0.04] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1137	chr8	72469741	72469742	rs4738141	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	8q13.3	MSC	rs4738141-G	0.24980000000000002	5E-7	(EA, women)	0.0298	[0.018-0.041] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1137	chr8	72469741	72469742	rs4738141	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	8q13.3	MSC	rs4738141-G	0.24980000000000002	3E-9	(EA)	0.0275	[0.018-0.037] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1137	chr8	72469741	72469742	rs4738141	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	8q13.3	EYA1	rs4738141-G	0.24980000000000002	1E-6	(women)	0.0279	[0.017-0.039] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1137	chr8	72469741	72469742	rs4738141	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	8q13.3	EYA1	rs4738141-G	0.24980000000000002	1E-10		0.028	[0.019-0.037] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1137	chr8	72469741	72469742	rs4738141	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	8q13.3	MSC	rs4738141-G	0.24980000000000002	7E-8	(EA)	0.0283	[0.018-0.038] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1137	chr8	72469741	72469742	rs4738141	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	8q13.3	MSC	rs4738141-G	0.24980000000000002	7E-8		0.0283	[0.018-0.038] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1137	chr8	72469741	72469742	rs4738141	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	8q13.3	MSC	rs4738141-G	0.24919999999999998	5E-6	(EA, women)	0.031	[0.018-0.044] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1137	chr8	72469741	72469742	rs4738141	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	8q13.3	EYA1	rs4738141-G	0.24919999999999998	5E-6	(women)	0.031	[0.018-0.044] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1137	chr8	72469741	72469742	rs4738141	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	8q13.3	MSC	rs4738141-?	0.24980000000000002	8E-6	(EA, women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1137	chr8	72469741	72469742	rs4738141	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	8q13.3	MSC	rs4738141-?	0.24980000000000002	1E-8	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1137	chr8	72469741	72469742	rs4738141	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	8q13.3	EYA1	rs4738141-?	0.24980000000000002	8E-6	(women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1137	chr8	72469741	72469742	rs4738141	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	8q13.3	EYA1	rs4738141-?	0.24980000000000002	1E-8				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1137	chr8	72469741	72469742	rs4738141	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	8q13.3	LOC100132809	rs4738141-G	0.27290000000000003	2E-8		0.0234	[0.015-0.032] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1137	chr8	72469741	72469742	rs4738141	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	8q13.3	LOC100132809	rs4738141-G	0.27290000000000003	4E-6		0.0222	[0.013-0.032] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1137	chr8	72469741	72469742	rs4738141	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	8q13.3	LOC100132809	rs4738141-?	0.27290000000000003	5E-7				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1137	chr8	72473890	72473891	rs1424864	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8q13.3	RP11-1102P16.1	rs1424864-A	NR	2E-8		0.0162549	[0.011-0.022] unit increase	Affymetrix [321114] (imputed)	N
1137	chr8	72473890	72473891	rs1424864	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	8q13.3	NR	rs1424864-?	NR	1E-16				Affymetrix [~ 8270000] (imputed)	N
1137	chr8	72473890	72473891	rs1424864	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	8q13.3	NR	rs1424864-?	NR	3E-12				Affymetrix [~ 8270000] (imputed)	N
1137	chr8	72475747	72475748	rs7843475	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	8q13.3	RP11-1102P16.1	rs7843475-G	0.256508	2E-13		0.0188239	[0.014-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1137	chr8	72477331	72477332	rs10099536	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	8q13.3	RP11-1102P16.1	rs10099536-T	NR	5E-14		0.0613538	[0.045-0.077] unit increase	Affymetrix [319769] (imputed)	N
1137	chr8	72477331	72477332	rs10099536	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	8q13.3	RP11-1102P16.1	rs10099536-T	NR	1E-14		0.0627917	[0.047-0.079] unit increase	Affymetrix [319769] (imputed)	N
1137	chr8	72477331	72477332	rs10099536	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8q13.3	RP11-1102P16.1	rs10099536-T	NR	9E-17		0.068387	[0.052-0.084] unit increase	Affymetrix [321114] (imputed)	N
1137	chr8	72477331	72477332	rs10099536	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	8q13.3	RP11-1102P16.1	rs10099536-T	NR	5E-16		0.066866	[0.051-0.083] unit increase	Affymetrix [321169] (imputed)	N
1137	chr8	72481166	72481167	rs2891335	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8q13.3	RP11-1102P16.1	rs2891335-G	NR	7E-10		0.0220528	[0.015-0.029] unit increase	Affymetrix [127266] (imputed)	N
1137	chr8	72482594	72482595	rs74650166	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	8q13.3	NR	rs74650166-?	NR	4E-10				Affymetrix [~ 8270000] (imputed)	N
1137	chr8	72482594	72482595	rs74650166	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	8q13.3	NR	rs74650166-?	NR	6E-9				Affymetrix [~ 8270000] (imputed)	N
1138	chr8	72482868	72482869	rs4236988	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	8q13.3	RP11-1102P16.1	rs4236988-A	NR	5E-9		0.0166694	[0.011-0.022] unit increase	Affymetrix [319769] (imputed)	N
1138	chr8	72482868	72482869	rs4236988	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	8q13.3	RP11-1102P16.1	rs4236988-A	NR	1E-9		0.0173	[0.012-0.023] unit increase	Affymetrix [319769] (imputed)	N
1138	chr8	72482868	72482869	rs4236988	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	8q13.3	RP11-1102P16.1	rs4236988-A	NR	2E-8		0.0162061	[0.011-0.022] unit increase	Affymetrix [321169] (imputed)	N
1138	chr8	72492237	72492238	rs12549058	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	8q13.3	NR	rs12549058-T	0.920749920492886	7E-9		0.037428677	units decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1138	chr8	72492237	72492238	rs12549058	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-hip ratio	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	8q13.3	MSC	rs12549058-T	0.9162	6E-8	(EA, women)	0.0463	[0.03-0.063] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1138	chr8	72492237	72492238	rs12549058	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-hip ratio	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	8q13.3	MSC	rs12549058-T	0.9162	3E-10	(EA)	0.0402	[0.028-0.053] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1138	chr8	72492248	72492249	rs35727416	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	8q13.3	RP11-1102P16.1	rs35727416-T	NR	1E-10		0.0397918	[0.028-0.052] unit increase	Affymetrix [319769] (imputed)	N
1138	chr8	72492248	72492249	rs35727416	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	8q13.3	RP11-1102P16.1	rs35727416-T	NR	9E-11		0.0399614	[0.028-0.052] unit increase	Affymetrix [319769] (imputed)	N
1138	chr8	72492248	72492249	rs35727416	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8q13.3	RP11-1102P16.1	rs35727416-T	NR	2E-9		0.037268	[0.025-0.049] unit increase	Affymetrix [321114] (imputed)	N
1138	chr8	72492248	72492249	rs35727416	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	8q13.3	RP11-1102P16.1	rs35727416-T	NR	8E-12		0.0424868	[0.03-0.055] unit increase	Affymetrix [321169] (imputed)	N
1138	chr8	72493184	72493185	rs6994124	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	8q13.3		rs6994124-?	NR	6E-10		0.00647038	[0.0044-0.0085] unit decrease	NR [NR]	N
1138	chr8	72493184	72493185	rs6994124	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	8q13.3	RP11-1102P16.1	rs6994124-C	NR	3E-25		0.0334987	[0.027-0.04] unit increase	Affymetrix [319769] (imputed)	N
1138	chr8	72493184	72493185	rs6994124	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	8q13.3	RP11-1102P16.1	rs6994124-C	NR	5E-26		0.034019	[0.028-0.04] unit increase	Affymetrix [319769] (imputed)	N
1138	chr8	72493184	72493185	rs6994124	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	8q13.3		rs6994124-?	NR	4E-37				NR [~ 8900000] (imputed)	N
1138	chr8	72498066	72498067	rs150449323	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	8q13.3	NR	rs150449323-C	0.0921	9E-11				NR [9056863] (imputed)	N
1138	chr8	72506453	72506454	rs1345976	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	8q13.3	NR	rs1345976-A	NR	3E-10		0.0255	[0.017-0.034] unit increase	Affymetrix [9000000] (imputed)	N
1138	chr8	72507295	72507296	rs6983239	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	8q13.3		rs6983239-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1138	chr8	72514091	72514092	rs12547135	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	8q13.3	intergenic	rs12547135-C	0.2434	8E-9		0.02417935	[0.016-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
1138	chr8	72514227	72514228	rs12679556	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI in non-smokers	75,379 European ancestry women, 45,811 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	8q13.3	MSC	rs12679556-T	0.7074	5E-6		0.0149	[0.0086-0.0212] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1138	chr8	72514227	72514228	rs12679556	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (joint analysis main effects and smoking interaction)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	8q13.3	MSC	rs12679556-T	0.7074	8E-8	(women)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1138	chr8	72514227	72514228	rs12679556	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (joint analysis main effects and smoking interaction)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	8q13.3	MSC	rs12679556-T	0.7074	5E-8				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1138	chr8	72514227	72514228	rs12679556	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	8q13.3	MSC	rs12679556-T	0.7074	2E-6	(women)	0.0246	[0.014-0.035] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1138	chr8	72514227	72514228	rs12679556	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	8q13.3	MSC	rs12679556-T	0.7074	1E-9		0.0241	[0.016-0.032] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1138	chr8	72514227	72514228	rs12679556	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in non-smokers	77,113 European ancestry women, 47,319 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	8q13.3	MSC	rs12679556-T	0.7067	8E-7		0.0216	[0.013-0.03] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1138	chr8	72514227	72514228	rs12679556	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	8q13.3	MSC	rs12679556-T	0.7067	1E-7				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1138	chr8	72514227	72514228	rs12679556	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	8q13.3	MSC	rs12679556-T	0.7067	1E-8		0.0221	[0.014-0.03] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1138	chr8	72514227	72514228	rs12679556	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	8q13.3	MSC	rs12679556-T	0.7067	1E-6	(women)	0.0245	[0.015-0.034] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1138	chr8	72514227	72514228	rs12679556	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex x age interaction (4df test)	up to 43,776 European ancestry men aged <50, up to 50,526 European ancestry women aged <50, up to 69,944 European ancestry men aged >50, up to 88,129 European ancestry women aged >50	NA	8q13.3	NR	rs12679556-T	0.753113548949924	3E-7				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1138	chr8	72514227	72514228	rs12679556	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	8q13.3	MSC	rs12679556-G	0.2767	2E-10		0.0243	[0.017-0.032] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1138	chr8	72514227	72514228	rs12679556	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	8q13.3	MSC	rs12679556-G	0.2711	3E-10	(women)	0.0316	[0.022-0.041] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1138	chr8	72514227	72514228	rs12679556	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	8q13.3	MSC	rs12679556-G	0.2477	2E-10	(EA, women)	0.0329	[0.023-0.043] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1138	chr8	72514227	72514228	rs12679556	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	8q13.3	MSC	rs12679556-G	0.2475	2E-11	(EA)	0.0268	[0.019-0.035] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1138	chr8	72514227	72514228	rs12679556	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	8q13.3	MSC	rs12679556-T	0.7525	1E-11	(EA,women)	0.0345	[0.025-0.044] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1138	chr8	72514227	72514228	rs12679556	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	8q13.3	MSC	rs12679556-T	0.7525	1E-11	(EA)	0.0263	[0.019-0.034] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1138	chr8	72525115	72525116	rs59534651	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	8q13.3	Intergenic	rs59534651-G	NR	1E-6		1.64309	[0.98-2.31] unit decrease	Illumina [13520550] (imputed)	N
1138	chr8	72528848	72528849	rs74677734	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	8q13.3	NR	rs74677734-A	0.04885	5E-10		0.003259	[0.0022-0.0043] unit increase	Affymetrix [NR] (imputed)	N
1138	chr8	72531601	72531601	rs544039890	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	8q13.3	RP11-1102P16.1	rs544039890-AT	NR	2E-22		0.0453595	[0.036-0.054] unit increase	Affymetrix [319769] (imputed)	N
1138	chr8	72531601	72531601	rs544039890	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	8q13.3	RP11-1102P16.1	rs544039890-AT	NR	2E-8		0.0288407	[0.019-0.039] unit increase	Affymetrix [323858] (imputed)	N
1138	chr8	72531601	72531601	rs544039890	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	8q13.3	RP11-1102P16.1	rs544039890-AT	NR	4E-23		0.0461151	[0.037-0.055] unit increase	Affymetrix [319769] (imputed)	N
1138	chr8	72531601	72531601	rs544039890	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	8q13.3	RP11-1102P16.1	rs544039890-AT	NR	3E-8		0.0286447	[0.019-0.039] unit increase	Affymetrix [127266] (imputed)	N
1138	chr8	72531601	72531601	rs544039890	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8q13.3	RP11-1102P16.1	rs544039890-AT	NR	2E-24		0.0477921	[0.039-0.057] unit increase	Affymetrix [321114] (imputed)	N
1138	chr8	72531601	72531601	rs544039890	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	8q13.3	RP11-1102P16.1	rs544039890-AT	NR	1E-27		0.0512151	[0.042-0.06] unit increase	Affymetrix [321169] (imputed)	N
1138	chr8	72543358	72543359	rs7006988	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	8q13.3	NR	rs7006988-?	NR	1E-8				Illumina [7760689] (imputed)	N
1138	chr8	72561741	72561742	rs7834018	22843504	Anney R	2012-07-26	Hum Mol Genet	Individual common variants exert weak effects on the risk for autism spectrum disorders.	Autism	1,419 European ancestry cases from 1416 families	1,314 European ancestry cases from 1301 families	8q13.3	intergenic	rs7834018-?	NR	8E-7	(Strict, EA)	1.56	[1.3-1.89]	Illumina [947233]	N
1138	chr8	72565124	72565125	rs59849217	29535370	Kleinstein SE	2018-02-28	Genes Immun	Genome-wide association study (GWAS) of human host factors influencing viral severity of herpes simplex virus type 2 (HSV-2).	Virologic severity in Herpes simplex virus type 2 infection	223 European ancestry individuals	NA	8q13.3	intergenic	rs59849217-?	NR	3E-6				Illumina [1539908]	N
1138	chr8	72598449	72598450	rs17734073	31809533	Han X	2019-09-06	Hum Mol Genet	Genome-wide association analysis of 95 549 individuals identifies novel loci and genes influencing optic disc morphology.	Optic disc size	67,040 British ancestry individuals	28,509 European ancestry individuals	8q13.3	MSC	rs17734073-A	0.87	3E-10		0.02	unit decrease	Affymetrix [8928767] (imputed)	N
1138	chr8	72604508	72604509	rs67120362	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (multi-trait analysis)	90,939 European ancestry individuals	NA	8q13.3	EYA1, MSC	rs67120362-T	0.81	7E-10		0.0067	NR unit decrease	Affymetrix, Illumina [8002429] (imputed)	N
1138	chr8	72604508	72604509	rs67120362	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (adjusted for vertical disc diameter)	67,040 British ancestry individuals	NA	8q13.3	EYA1, MSC	rs67120362-T	0.81	9E-6		0.005	NR unit decrease	Affymetrix [at least 8002429] (imputed)	N
1138	chr8	72609068	72609069	rs62519907	30327367	Jung SY	2018-10-16	Cancer Prev Res (Phila)	Genome-wide meta-analysis of gene-environmental interaction for insulin-resistance phenotypes and breast cancer risk in postmenopausal women.	Homeostasis model assessment of insulin resistance x saturated fatty acids interaction	1,087 European ancestry less-fat diet women, 10,707 European ancestry more-fat diet women	NA	8q13.3	MSC	rs62519907-?	NR	6E-7				NR [18717781] (imputed)	N
1138	chr8	72609068	72609069	rs62519907	30327367	Jung SY	2018-10-16	Cancer Prev Res (Phila)	Genome-wide meta-analysis of gene-environmental interaction for insulin-resistance phenotypes and breast cancer risk in postmenopausal women.	Homeostasis model assessment of insulin resistance in less-fat diet	1,087 European ancestry women	NA	8q13.3	MSC	rs62519907-?	NR	5E-8		29.57	[NR]	NR [18717781] (imputed)	N
1139	chr8	72639322	72639323	rs144230162	29213071	Mendez-Giraldez R	2017-12-06	Sci Rep	GWAS of the electrocardiographic QT interval in Hispanics/Latinos generalizes previously identified loci and identifies population-specific signals.	QT interval	15,997 Hispanic/Latino individuals	NA	8q13.3	MSC	rs144230162-A	0.99	6E-7		8.6	[5.23-11.97] ms increase	Affymetrix, Illumina [up to 17586686] (imputed)	N
1139	chr8	72648089	72648090	rs13281719	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	8q13.3		rs13281719-T	NR	4E-8		0.0184	[0.012-0.025] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
1139	chr8	72668182	72668183	rs62519913	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	8q13.3	NR	rs62519913-T	NR	1E-9		0.0275	[0.019-0.036] unit decrease	Affymetrix [9000000] (imputed)	N
1139	chr8	72682692	72682693	rs4128527	26562150	Seldin MF	2015-10-10	Mol Med	Genome-wide Association Study of Late-Onset Myasthenia Gravis: Confirmation of TNFRSF11A, and Identification of ZBTB10 and Three Distinct HLA Associations.	Late-onset myasthenia gravis	532 European ancestry cases, 2,128 European ancestry controls	NA	8q13.3	MSC	rs4128527-C	0.81	4E-6		1.6129031	[1.30-2.00]	Illumina [6175472] (imputed)	N
1139	chr8	72692584	72692585	rs13257626	30219690	Heinzman JT	2018-09-07	J Affect Disord	GWAS and systems biology analysis of depressive symptoms among smokers from the COPDGene cohort.	Depression in smokers	1,622 European ancestry cases, 391 African American cases, 4,954 European ancestry controls, 2,749 African American controls	NA	8q13.3	MSC	rs13257626-G	0.9769	9E-6	(EA)			Illumina [NR] (imputed)	N
1139	chr8	72697528	72697529	rs112755922	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Endometriosis	645 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	8q13.3	Intergenic	rs112755922-?		5E-6		1.31	[1.17-1.47]	Illumina [7645193] (imputed)	N
1139	chr8	72709107	72709108	rs6999602	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	8q13.3		rs6999602-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1139	chr8	72727280	72727281	rs7822863	30395268	Khanshour AM	2018-11-01	Hum Mol Genet	Genome-wide meta-analysis and replication studies in multiple ethnicities identify novel adolescent idiopathic scoliosis susceptibility loci.	Adolescent idiopathic scoliosis	2,295 East Asian ancestry cases, 11,084 East Asian ancestry controls, 1,503 European ancestry cases, 18,594 European ancestry controls	2,737 East Asian ancestry cases, 56,815 East Asian ancestry controls, 1,421 European ancestry cases, 1,966 European ancestry controls	8q13.3	EYA1, MSC	rs7822863-?		9E-8		1.14	[1.09-1.19]	Affymetrix, Illumina [3493832] (imputed)	N
1140	chr8	72749563	72749564	rs1905041	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	8q13.3	NR	rs1905041-?	NR	5E-10				Affymetrix [NR]	N
1140	chr8	72754638	72754639	rs3779760	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8q13.3	TRPA1	rs3779760-?	NR	5E-6	(CE 14:0)	0.17411292	[0.1-0.249] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1140	chr8	72770305	72770306	rs72657954	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	8q13.3	LOC100132891	rs72657954-A	0.999	2E-7	(AA)	0.288	unit increase	Illumina [NR] (imputed)	N
1140	chr8	72785490	72785491	rs9694605	33190678	Ho YYW	2020-10-01	Twin Res Hum Genet	Comparison of Genome-Wide Association Scans for Quantitative and Observational Measures of Human Hair Curvature.	Hair curvature (quantitative)	2,225 European ancestry individuals	NA	8q13.3	NR	rs9694605-?		6E-6		0.01	[0.0057-0.0143] unit increase	Illumina [7533529] (imputed)	N
1140	chr8	72808086	72808087	rs72657970	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	8q13.3	LOC100132891	rs72657970-A	0.999	2E-7	(AA)	0.288	unit increase	Illumina [NR] (imputed)	N
1140	chr8	72864239	72864240	rs13263376	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous malignant melanoma	36,760 European ancestry cases, 375,188 European ancestry controls	NA	8q13.3	RP11-383H13.1	rs13263376-A	0.6357	1E-12		1.0739985	NR	Affymetrix, Illumina [NR] (imputed)	N
1140	chr8	72871110	72871111	rs1481853	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Nevus count or cutaneous melanoma	36,760 European ancestry cutaneous melanoma cases, 375,188 European ancestry controls, 12,930 European ancestry individuals, 52,847 individuals	NA	8q13.3	RP11-383H13.1	rs1481853-C	0.365707	6E-15				Affymetrix, Illumina [NR] (imputed)	N
1141	chr8	72891747	72891748	rs10111413	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	8q13.3		rs10111413-A	NR	2E-10		0.0152	[0.01-0.02] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
1141	chr8	72891747	72891748	rs10111413	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	8q13.3	NR	rs10111413-A	0.415	3E-9		0.918	[0.89-0.95]	Illumina [11270530] (imputed)	N
1141	chr8	72891747	72891748	rs10111413	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	8q13.3	RP11-383H13.1	rs10111413-A	0.231202	2E-10		0.016739706	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1141	chr8	72908282	72908283	rs894885	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	8q13.3	RP11-383H13.1	rs894885-T	0.238057	2E-12		0.018324833	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1141	chr8	72909348	72909349	rs10109370	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q13.3	NR	rs10109370-A	0.27328	7E-17				Affymetrix, Illumina [23472807] (imputed)	N
1141	chr8	72909348	72909349	rs10109370	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	8q13.3	NR	rs10109370-A	0.238495	2E-17		0.018902	[0.015-0.023] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1141	chr8	72980803	72980804	rs12234934	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in ever smokers	23,223 European ancestry cases,  16,964 European ancestry controls	NA	8q21.11	TRPA1	rs12234934-A	0.102964307	7E-6		1.1144483	[1.062854563-1.168546469]	Illumina [10439017] (imputed)	N
1141	chr8	72991579	72991580	rs75455452	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	8q21.11	Intergenic	rs75455452-T	0.994	4E-6	(AA)	0.578	NR unit increase	Illumina [NR] (imputed)	N
1141	chr8	73002467	73002468	rs187636186	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	8q21.11	Intergenic	rs187636186-T	0.994	4E-6	(AA)	0.578	NR unit increase	Illumina [NR] (imputed)	N
1142	chr8	73009265	73009266	rs112461602	27611488	Almoguera B	2016-09-09	Am J Respir Crit Care Med	Identification of Four Novel Loci in Asthma in European American and African American Populations.	Adult asthma	337 African American allergic asthma cases, 321 African American non-allergic asthma cases, 1,367 African American controls, 466 European American allergic asthma cases, 626 European American non-allergic asthma cases, 7,878 European American controls	NA	8q21.11	TRPA1	rs112461602-?	NR	3E-6		0.454	[0.27-0.64] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1142	chr8	73025832	73025833	rs192074192	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	8q21.11	Intergenic	rs192074192-G	0.994	4E-6	(AA)	0.579	NR unit increase	Illumina [NR] (imputed)	N
1142	chr8	73038450	73038451	rs7013415	22179738	Lai HM	2011-12-16	Rheumatology (Oxford)	Gout and type 2 diabetes have a mutual inter-dependent effect on genetic risk factors and higher incidences.	Gout	20 Han Chinese ancestry male gout cases, 42 Han Chinese ancestry male controls	NA	8q21.11	TRPA1	rs7013415-?		1E-7				Illumina [479403]	N
1142	chr8	73049985	73049986	rs113031067	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Treatment or medication use - ezetrol 10mg tablet (UKB data field 20003_1141192740)	851 European ancestry cases, 455,425 European ancestry controls	NA	8q21.11		rs113031067-T	0.004105	2E-10		3.14	[2.17-4.11] unit increase	NR [11842647] (imputed)	N
1142	chr8	73067681	73067682	rs4363243	30120420	Sun R	2018-08-17	Mol Psychiatry	Identification of novel loci associated with infant cognitive ability.	Mental composite score	502 Bangladeshi ancestry infants, 462 Hispanic or Latin American infants	NA	8q21.11	NR	rs4363243-?	NR	2E-6		2.9	[1.7-4.09] unit decrease	Illumina [552487]	N
1142	chr8	73070734	73070735	rs11994034	23527680	Ebejer JL	2013-04-01	Twin Res Hum Genet	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (combined symptoms)	1,851 individuals	155 individuals	8q21.11	NR	rs11994034-T		7E-6				Illumina [2373249] (imputed)	N
1142	chr8	73071958	73071959	rs11984631	21685187	Siedlinski M	2011-06-16	Thorax	Genome-wide association study of smoking behaviours in patients with COPD.	Current cigarettes per day in chronic obstructive pulmonary disease	1,113 European ancestry cases	NA	8q21.11	intergenic	rs11984631-T	0.99	2E-6		1.351	unit increase	Illumina [~ 6300000] (imputed)	N
1142	chr8	73106915	73106916	rs1963982	17903302	Levy D	2007-09-19	BMC Med Genet	Framingham Heart Study 100K Project: genome-wide associations for blood pressure and arterial stiffness.	Blood pressure	Up to 1,327 individuals	NA	8q21.11	intergenic	rs1963982-?	NR	3E-6	(DBP)			Affymetrix [70897]	N
1143	chr8	73142381	73142382	rs12541758	26708285	Wakil SM	2016-02-01	Atherosclerosis	A genome-wide association study reveals susceptibility loci for myocardial infarction/coronary artery disease in Saudi Arabs.	Myocardial infarction	2,563 Saudi Arab ancestry cases, 1,868 Saudi Arab ancestry controls	866 Saudi Arab ancestry cases, 371 Saudi Arab ancestry controls	8q21.11	TRPA1	rs12541758-T	0.4	3E-6		1.16	[NR]	Affymetrix [537798]	N
1143	chr8	73142381	73142382	rs12541758	26708285	Wakil SM	2016-02-01	Atherosclerosis	A genome-wide association study reveals susceptibility loci for myocardial infarction/coronary artery disease in Saudi Arabs.	Coronary artery disease	2,165 Saudi Arab ancestry cases, 2,266 Saudi Arab ancestry controls	503 Saudi Arab ancestry cases, 734 Saudi Arab ancestry controls	8q21.11	TRPA1	rs12541758-T	0.4	5E-13		1.25	[NR]	Affymetrix [537798]	N
1143	chr8	73236809	73236810	rs7006742	22424883	Imboden M	2012-03-15	J Allergy Clin Immunol	Genome-wide association study of lung function decline in adults with and without asthma.	Pulmonary function decline	1,441 European ancestry asthma cases, 2,677 European ancestry controls	1,160 European ancestry asthma cases, 10,858 European ancestry controls	8q21.11	intergenic	rs7006742-?	NR	1E-7	(FEV1 decline in asthmatics)	0.7773	[0.49-1.06] unit increase	Illumina [~ 2500000] (imputed)	N
1144	chr8	73292625	73292626	rs1652752	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	8q21.11	NR	rs1652752-?	NR	3E-11				Affymetrix [NR]	N
1144	chr8	73353196	73353197	rs348147	28322283	Chibnik LB	2017-03-21	Mol Psychiatry	Susceptibility to neurofibrillary tangles: role of the PTPRD locus and limited pleiotropy with other neuropathologies.	Neuropathologic traits (pleiotropy)	909 European ancestry individuals	369 individuals	8q21.11	NR	rs348147-G	0.89	7E-6	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1144	chr8	73363988	73363989	rs2116078	19010793	Baranzini SE	2008-11-14	Hum Mol Genet	Genome-wide association analysis of susceptibility and clinical phenotype in multiple sclerosis.	Multiple sclerosis (age of onset)	978 European ancestry cases, 883 European ancestry controls	NA	8q21.11	KCNB2	rs2116078-?	0.48	3E-6			[NR]	Illumina [551642]	N
1145	chr8	73434704	73434705	rs6992315	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	8q21.11		rs6992315-C	0.271047	2E-8		0.0232076	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
1145	chr8	73435155	73435156	rs6993128	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	8q21.11		rs6993128-C	0.271053	1E-8		0.0231633	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
1145	chr8	73435155	73435156	rs6993128	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	8q21.11		rs6993128-C	0.271053	7E-9		0.0238484	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
1145	chr8	73435155	73435156	rs6993128	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	8q21.11		rs6993128-C	0.271053	1E-8		0.0235153	[0.015-0.032] unit decrease	NR [11722792] (imputed)	N
1145	chr8	73435963	73435964	rs1808629	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Sex hormone-binding globulin levels	389,354 European ancestry individuals	NA	8q21.11		rs1808629-G	0.31	6E-6		0.009	nmol/L decrease	NR [NR] (imputed)	N
1145	chr8	73435963	73435964	rs1808629	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	8q21.11		rs1808629-G	0.31	2E-17				NR [NR] (imputed)	N
1145	chr8	73435963	73435964	rs1808629	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	High density lipoprotein cholesterol levels	392,965 European ancestry individuals	NA	8q21.11		rs1808629-G	0.31	7E-9		0.012	mmol/L decrease	NR [NR] (imputed)	N
1145	chr8	73435963	73435964	rs1808629	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	8q21.11		rs1808629-G	0.31	2E-24		0.017	% increase	NR [NR] (imputed)	N
1145	chr8	73435963	73435964	rs1808629	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	8q21.11		rs1808629-?	NR	3E-24				NR [~ 8900000] (imputed)	N
1145	chr8	73436093	73436094	rs12550268	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8q21.11	TRPA1	rs12550268-?	NR	6E-6	(guanosine diphosphate)	0.1809353	[0.1-0.26] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1145	chr8	73439069	73439070	rs1431659	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	8q21.11	KCNB2	rs1431659-A	0.271535	3E-9		0.0127629	[0.0086-0.017] unit decrease	Affymetrix [NR] (imputed)	N
1145	chr8	73439069	73439070	rs1431659	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	8q21.11	NA	rs1431659-A	0.2736	1E-12		0.0143	[0.01-0.018] unit increase	NR [~ 27400000] (imputed)	N
1145	chr8	73439069	73439070	rs1431659	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	8q21.11	NA	rs1431659-A	0.2737	2E-23		0.0191	[0.015-0.023] unit increase	NR [~ 27400000] (imputed)	N
1145	chr8	73439069	73439070	rs1431659	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	8q21.11	NA	rs1431659-A	0.2737	2E-23		0.0191	[0.015-0.023] unit increase	NR [~ 27400000] (imputed)	N
1145	chr8	73439097	73439098	rs34784490	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	8q21.11	NR	rs34784490-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
1145	chr8	73440370	73440371	rs35957544	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	8q21.11		rs35957544-T	NR	3E-16		0.0166	[0.013-0.021] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1145	chr8	73440370	73440371	rs35957544	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		8q21.11	KCNB2	rs35957544-G	0.425673	7E-20		0.0126785	[0.01-0.0154] unit increase	Affymetrix [12370749]	N
1145	chr8	73443197	73443198	rs12679106	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	8q21.11		rs12679106-G	0.290406	5E-9		0.0253895	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
1145	chr8	73443197	73443198	rs12679106	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	8q21.11	NR	rs12679106-G	0.289944	2E-9		0.0136032	[0.0092-0.018] unit increase	NR [NR]	N
1145	chr8	73443197	73443198	rs12679106	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	8q21.11	NR	rs12679106-?	NR	7E-24				Affymetrix [~ 8270000] (imputed)	N
1145	chr8	73449288	73449289	rs185197019	29608535	Kuehn MH	2018-03-30	J Neuroophthalmol	Genetic Survey of Adult-Onset Idiopathic Intracranial Hypertension.	Idiopathic intracranial hypertension	63 European ancestry cases, 21 African American cases, 4 Native American cases, 1 Asian cases, 6 cases, 61 European ancestry controls, 21 African American controls, 3 Native American controls, 1 Asian controls, 9 controls	NA	8q21.11	Intergenic	rs185197019-?		6E-6				Illumina [301908]	N
1145	chr8	73449939	73449940	rs7845090	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	HDL cholesterol levels	115,082 European ancestry individuals	NA	8q21.11		rs7845090-G	0.290632	8E-9		0.0235395	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
1145	chr8	73449939	73449940	rs7845090	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	8q21.11		rs7845090-G	0.290632	7E-9		0.0238012	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
1145	chr8	73449939	73449940	rs7845090	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	8q21.11		rs7845090-A	NR	9E-22		0.0174	[0.014-0.021] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1145	chr8	73449939	73449940	rs7845090	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	8q21.11	NR	rs7845090-G	0.2888	3E-13		0.020056041	[0.015-0.025] unit increase	Affymetrix [10549349] (imputed)	N
1145	chr8	73449939	73449940	rs7845090	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	8q21.11	NR	rs7845090-?	NR	9E-6	(male)	0.1277	[0.071-0.184] unit decrease	Affymetrix [7794483] (imputed)	N
1145	chr8	73449939	73449940	rs7845090	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	8q21.11	NR	rs7845090-?	NR	4E-10		0.14593	[0.1-0.19] unit decrease	Affymetrix [7794483] (imputed)	N
1145	chr8	73449939	73449940	rs7845090	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	8q21.11	NA	rs7845090-A	0.7029	5E-23		0.0207	[0.017-0.025] unit decrease	NR [~ 27400000] (imputed)	N
1145	chr8	73453945	73453946	rs349356	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Tea consumption	336,898 European ancestry individuals	39,924 European ancestry individuals	8q21.11	KCNB2	rs349356-T	0.7046	3E-8		0.0092	[0.0059-0.0125] unit increase	Affymetrix [~ 7740000] (imputed)	N
1145	chr8	73453945	73453946	rs349356	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	8q21.11		rs349356-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1145	chr8	73459512	73459513	rs187028	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	8q21.11	KCNB2	rs187028-T	0.6854	2E-10		1.0224482		Affymetrix [11880941] (imputed)	N
1145	chr8	73471716	73471717	rs349345	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	8q21.11	NR	rs349345-?	NR	5E-10				Affymetrix [~ 8270000] (imputed)	N
1145	chr8	73503742	73503743	rs349359	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	8q21.11	KCNB2	rs349359-C	0.242	3E-8		1.04	[1.03-1.06]	Affymetrix, Illumina [11800000] (imputed)	N
1146	chr8	73590995	73590996	rs2256816	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	Intrinsic epigenetic age acceleration	6,148 African American individuals	NA	8q21.11	NR	rs2256816-G	0.7353	4E-8		0.5689	[0.37-0.77] unit decrease	Affymetrix, Illumina [12989965] (imputed)	N
1146	chr8	73625003	73625004	rs563763403	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	8q21.11	NR	rs563763403-C	0.999631	7E-11		2.74812	[1.92-3.57] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1146	chr8	73633027	73633028	rs2247572	20125193	Cirulli ET	2010-02-03	Eur J Hum Genet	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American individuals, up to 74 South Asian ancestry individuals	NA	8q21.11	KCNB2	rs2247572-?	NR	1E-6	(Animals)			Illumina [up to 563855]	N
1147	chr8	73705820	73705821	rs142420573	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Rheumatic fever	1,115 European ancestry cases, 88,076 European ancestry controls	NA	8q21.11	NR	rs142420573-?	NR	1E-6		1.4223	[0.94-1.91] unit increase	Illumina [at least 560000] (imputed)	N
1147	chr8	73778641	73778642	rs10504543	17903301	Vasan RS	2007-09-19	BMC Med Genet	Genome-wide association of echocardiographic dimensions, brachial artery endothelial function and treadmill exercise responses in the Framingham Heart Study.	Echocardiographic traits	Up to 1,238 European ancestry individuals	NA	8q21.11	KCNB2	rs10504543-?	NR	5E-6	(LVSD)			Affymetrix [70897]	N
1148	chr8	73803749	73803750	rs17189998	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	8q21.11	Intergenic	rs17189998-?	NR	2E-6		1.665	[NR]	Affymetrix [492217] (imputed)	N
1148	chr8	73842522	73842523	rs571622299	29695241	Charmet R	2018-04-25	Cardiovasc Diabetol	Novel risk genes identified in a genome-wide association study for coronary artery disease in patients with type 1 diabetes.	Coronary artery disease in type 1 diabetes	434 European ancestry cases with coronary artery disease, 3,123 European ancestry cases without coronary artery disease	585 cases with coronary artery disease, 2,612 cases without coronary artery disease	8q21.11	KCNB2	rs571622299-A	0.015	6E-6	(EA)	4.12	[NR]	Illumina [6728637] (imputed)	N
1148	chr8	73852752	73852753	rs1384103	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs for peptic ulcer and gastro-oesophageal reflux disease)	53,137 European ancestry cases, 79,230 European ancestry controls, 53,363 East Asian ancestry cases, 125,363 East Asian ancestry controls	NA	8q21.11		rs1384103-G	NR	1E-8		0.0404	[0.026-0.054] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1148	chr8	73861201	73861202	rs74377791	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	8q21.11		rs74377791-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1148	chr8	73863753	73863754	rs148380447	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 4, facial height related to vertical position of gnathion)	2,187 European ancestry individuals	NA	8q21.11	NR	rs148380447-C	0.008024	1E-6		0.8221	[0.49-1.16] unit decrease	Illumina [10677593] (imputed)	N
1148	chr8	73886542	73886543	rs150176269	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q21.11	NR	rs150176269-C	0.999115	2E-17				Affymetrix, Illumina [24588908] (imputed)	N
1148	chr8	73889569	73889570	rs10104523	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	8q21.11	TERF1	rs10104523-T	0.477679	7E-10		0.0123392	[0.0083-0.0164] unit increase	NR [16516521] (imputed)	N
1148	chr8	73890334	73890335	rs3863241	33608531	Wu Y	2021-02-19	Nat Commun	GWAS of peptic ulcer disease implicates Helicobacter pylori infection, other gastrointestinal disorders and depression.	Gastroesophageal reflux disease, peptic ulcer disease and/or corresponding medications and treatment	90,175 European ancestry cases, 366,152 European ancestry controls	NA	8q21.11	NR	rs3863241-C	0.47	2E-8		0.97		NR [8546065] (imputed)	N
1148	chr8	73890424	73890425	rs4588900	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	8q21.11	NR	rs4588900-A	0.5164	2E-8		1.034	[1.02-1.05]	Affymetrix, Illumina [NR] (imputed)	N
1148	chr8	73920882	73920883	rs28365964	31171785	Dorajoo R	2019-06-06	Nat Commun	Loci for human leukocyte telomere length in the Singaporean Chinese population and trans-ethnic genetic studies.	Leukocyte telomere length	16,759 Singaporean Han Chinese ancestry individuals	6,337 Singaporean Chinese ancestry individuals, up to 37,505 European ancestry individuals	8q21.11	TERF1	rs28365964-T	NR	7E-15	(East Asian)	0.27	NR unit decrease	Illumina [6407959] (imputed)	N
1149	chr8	73978143	73978144	rs79617270	33941849	Chang X	2021-05-03	Commun Biol	Low frequency variants associated with leukocyte telomere length in the Singapore Chinese population.	Telomere length	20,177 Chinese ancestry individuals	5,356 Chinese ancestry individuals	8q21.11	TERF1, SBSPON	rs79617270-G	0.008	9E-13		0.376	[0.26-0.49] NR increase	Illumina [up to 4756872] (imputed)	N
1149	chr8	73984099	73984100	rs201734206	27114598	Liu C	2016-04-25	J Clin Oncol	Clinical and Genetic Risk Factors for Acute Pancreatitis in Patients With Acute Lymphoblastic Leukemia.	Asparaginase-induced acute pancreatitis in acute lymphoblastic leukemia (onset time)	46 European ancestry cases with pancreatitis, 3,023 European ancestry cases without pancreatitis, 11 Black cases with pancreatitis, 339 Black cases without pancreatitis, 46 Hispanic cases with pancreatitis, 1,131 Hispanic cases without pancreatitis, 1 Asian ancestry case with pancreatitis, 98 Asian ancestry cases without pancreatitis, 13 cases with with pancreatitis, 477 cases without pancreatitis	NA	8q21.11	C8orf84	rs201734206-T	0.0	2E-6		4.9		Affymetrix [at least 751455]	N
1149	chr8	73999658	73999659	rs9650245	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	8q21.11		rs9650245-?	NR	3E-11				NR [~ 8900000] (imputed)	N
1149	chr8	74007346	74007347	rs12677663	22412388	Kenny EE	2012-03-08	PLoS Genet	A genome-wide scan of Ashkenazi Jewish Crohn's disease suggests novel susceptibility loci.	Crohn's disease	737 Ashkenazi Jewish cases, 2,257  Ashkenazi Jewish controls	971 Ashkenazi Jewish cases, 2,124 Ashkenazi Jewish controls	8q21.11	C8orf84, TERF1, RPL7, RDH10, KCNB2	rs12677663-T	0.659	2E-8		1.15	[1.04-1.28]	Affymetrix, Illumina [1060934] (imputed)	N
1149	chr8	74035056	74035057	rs763578646	34620984	Skuladottir AT	2021-10-07	Commun Biol	A genome-wide meta-analysis uncovers six sequence variants conferring risk of vertigo.	Vertigo	48,072 European ancestry cases, 894,541 European ancestry controls	NA	8q21.11		rs763578646-C	NR	7E-6		2.45887		Affymetrix, Illumina [62056310] (imputed)	N
1149	chr8	74040482	74040483	rs149262213	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 4, facial height related to vertical position of gnathion)	2,187 European ancestry individuals	NA	8q21.11	NR	rs149262213-T	0.007336	3E-6		0.8337	[1.18-0.49] unit increase	Illumina [10677593] (imputed)	N
1150	chr8	74066178	74066179	rs2383876	22969067	Mishra A	2012-09-13	Invest Ophthalmol Vis Sci	Genetic variants near PDGFRA are associated with corneal curvature in Australians.	Corneal curvature	1,788 European ancestry twins and family members, 1,013 European ancestry unrelated individuals	NA	8q21.11	RPESP	rs2383876-A	NR	5E-6		0.0508	[0.029-0.073] mm decrease	Illumina [1704858] (imputed)	N
1150	chr8	74080734	74080735	rs13249487	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	8q21.11	NR	rs13249487-?	NR	9E-7				Affymetrix [NR]	N
1150	chr8	74109306	74109307	rs10108126	33218114	Rebelo MA	2020-11-18	Brain Sci	Genome-Wide Scan for Five Brain Oscillatory Phenotypes Identifies a New QTL Associated with Theta EEG Band.	Beta 1 electroencephalogram power	191 European ancestry individuals	NA	8q21.11	NR	rs10108126-?	NR	2E-6		0.05	NR unit increase	Affymetrix [388620]	N
1150	chr8	74177047	74177048	rs11775026	28577822	Deters KD	2017-05-31	Brain Lang	Genome-wide association study of language performance in Alzheimer's disease.	Language performance in older adults (adjusted for episodic memory)	310 European ancestry Alzheimer's disease individuals, 511 European ancestry individuals with late mild cognitive impairment, 280 European ancestry individuals with early mild cognitive impairment, 94 European ancestry individuals with significant memory concern, 365 European ancestry individuals with normal cognition	NA	8q21.11	C8orf89	rs11775026-?	NR	9E-7		0.379	[0.23-0.53] unit decrease	Illumina [5574300] (imputed)	N
1151	chr8	74194404	74194405	rs12546395	33381925	Buchanan VL	2020-12-30	Pediatr Obes	Genome-wide association study identifying novel variant for fasting insulin and allelic heterogeneity in known glycemic loci in Chilean adolescents: The Santiago Longitudinal Study.	Fasting glucose	543 Chilean individuals	NA	8q21.11	RPL7	rs12546395-A	0.62	1E-6		2.569	[1.52-3.61] unit decrease	Illumina [NR] (imputed)	N
1151	chr8	74198469	74198470	rs111900653	31201950	Lutz MW	2019-03-06	Neurobiol Aging	Analysis of pleiotropic genetic effects on cognitive impairment, systemic inflammation, and plasma lipids in the Health and Retirement Study.	C-reactive protein levels	6,545 European ancestry individuals	NA	8q21.11		rs111900653-C	0.07	8E-7		1.56	[1.12-2.59] unit decrease	Illumina [19468843] (imputed)	N
1151	chr8	74203721	74203722	rs58328254	32378780	Park B	2020-05-07	Cancer Sci	Genome-Wide Association Study of Genetic Variants Related to Anthracycline-Induced Cardiotoxicity in Early Breast Cancer.	Anthracycline-induced cardiotoxicity in early breast cancer	42 Korean ancestry cases, 215 Korean ancestry controls	NA	8q21.11	RPL7, RDH10	rs58328254-A	0.194	6E-6	(adjusted)			NR [346946]	N
1151	chr8	74221405	74221406	rs7837090	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	8q21.11	RDH10	rs7837090-C	0.8081	9E-11		0.2201	[0.15-0.29] mmHg increase	Affymetrix [NR] (imputed)	N
1151	chr8	74230167	74230168	rs534525861	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Alcohol consumption x traumatic event in childhood (felt hated by family member) interaction	46,394 European ancestry individuals	NA	8q21.11		rs534525861-?	NR	2E-8		2.5651	[1.67-3.46] unit increase	Affymetrix [NR] (imputed)	N
1151	chr8	74230222	74230223	rs6989495	33979322	Currant H	2021-05-12	PLoS Genet	Genetic variation affects morphological retinal phenotypes extracted from UK Biobank optical coherence tomography images.	Retinal nerve fibre layer thickness or ganglion cell inner plexiform layer thickness (MTAG)	31,434 European ancestry individuals	NA	8q21.11	NR	rs6989495-T	0.33	1E-9		0.23	[0.15-0.31] unit increase	Affymetrix [9231066] (imputed)	N
1151	chr8	74230222	74230223	rs6989495	33979322	Currant H	2021-05-12	PLoS Genet	Genetic variation affects morphological retinal phenotypes extracted from UK Biobank optical coherence tomography images.	Retinal nerve fibre layer (RNFL) thickness	31,434 European ancestry individuals	NA	8q21.11	NR	rs6989495-T	0.33	1E-9		0.23	[0.15-0.31] unit increase	Affymetrix [9231066] (imputed)	N
1151	chr8	74257946	74257947	rs10104429	33218114	Rebelo MA	2020-11-18	Brain Sci	Genome-Wide Scan for Five Brain Oscillatory Phenotypes Identifies a New QTL Associated with Theta EEG Band.	Beta 1 electroencephalogram power	191 European ancestry individuals	NA	8q21.11	NR	rs10104429-?	NR	2E-7		0.05	NR unit increase	Affymetrix [388620]	N
1151	chr8	74262048	74262049	rs147283017	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference	1,254 whole genome sequenced European ancestry individuals, 3,074 whole genome sequenced individuals, 29,716 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 701 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,050 Mylopotamos (founder/genetic isolate) individuals, 883 Pomak (founder/genetic isolate) individuals	205,909 European ancestry individuals	8q21.11	RDH10-AS1	rs147283017-A	0.0081	9E-6		0.237	[0.13-0.34] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1151	chr8	74271057	74271058	rs74835219	32489964	Cresci S	2020-01-03	J Lipid Atheroscler	Genetic Architecture of Circulating Very-Long-Chain (C24:0 and C22:0) Ceramide Concentrations.	Ceramide levels (C24:0)	2,217 European ancestry individuals	NA	8q21.11	RDH10	rs74835219-?	NR	8E-6	(conditioned on rs168622)	0.151	[0.084-0.218] unit decrease	Affymetrix [9346801] (imputed)	N
1151	chr8	74274190	74274191	rs12679254	18821565	Lasky-Su J	2008-12-05	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association scan of quantitative traits for attention deficit hyperactivity disorder identifies novel associations and confirms candidate gene associations.	Inattentive symptoms	930 European ancestry trios	NA	8q21.11	intergenic	rs12679254-?	NR	2E-6	(binary)			Perlegen [429981]	N
1151	chr8	74276842	74276843	rs16938625	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	8q21.11	AC111149.1	rs16938625-T	0.8481	2E-13		0.0195	[0.014-0.025] unit decrease	Affymetrix [18391927] (imputed)	N
1151	chr8	74281151	74281152	rs10112386	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	8q21.11		rs10112386-C	0.17	4E-21		9.43	z score increase	Affymetrix [9061022] (imputed)	N
1151	chr8	74281151	74281152	rs10112386	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	8q21.11	RDH10, STAU2	rs10112386-?		8E-12				Affymetrix, Illumina [NR] (imputed)	N
1151	chr8	74284817	74284818	rs2383896	33893285	Guindo-Martinez M	2021-04-23	Nat Commun	The impact of non-additive genetic associations on age-related complex diseases.	Varicose veins	2,483 European ancestry cases, 54,154 European ancestry controls	NA	8q21.11		rs2383896-G	0.479253	5E-8		1.17		Affymetrix [15348957] (imputed)	N
1151	chr8	74290337	74290338	rs192326911	30820047	Kunkle BW	2019-02-28	Nat Genet	Genetic meta-analysis of diagnosed Alzheimer's disease identifies new risk loci and implicates A?, tau, immunity and lipid processing.	Alzheimer's disease (late onset)	21,982 European ancestry cases, 41,944 European ancestry controls	up to 13,292 European ancestry cases, up to 17,219 European ancestry controls	8q21.11	AK128216, STAU2	rs192326911-?	NR	3E-6		1.65	[1.34-2.04]	Affymetrix, Illumina [11480632] (imputed)	N
1152	chr8	74348655	74348656	rs2383894	29682794	Szekely E	2018-04-22	Genet Epidemiol	Genetic associations with childhood brain growth, defined in two longitudinal cohorts.	White matter growth	581 European ancestry individuals, 31 African American individuals, 8 Asian American individuals 15 admixed individuals, 80 other ancestries individuals	NA	8q21.11	STAU2-AS1	rs2383894-?	NR	7E-6				Illumina [at least 653030]	N
1152	chr8	74361510	74361511	rs11774977	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	8q21.11	NR	rs11774977-A	0.447291	3E-9		0.0185834	[0.012-0.025] unit decrease	NR [19129689] (imputed)	N
1152	chr8	74362914	74362915	rs73318770	26545240	Giri A	2015-11-06	PLoS One	Genetic Determinants of Pelvic Organ Prolapse among African American and Hispanic Women in the Women's Health Initiative.	Pelvic organ prolapse (moderate/severe)	154 African American cases, 948 African American controls, 163 Hispanic cases, 305 Hispanic controls	NA	8q21.11	STAU2	rs73318770-G	0.07	8E-7	(AA)	3.21	[2.02-5.11]	Affymetrix [at least 730985] (imputed)	N
1152	chr8	74397984	74397985	rs7841768	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	8q21.11		rs7841768-C	0.4	4E-9		5.89	z score increase	Affymetrix [9061022] (imputed)	N
1152	chr8	74397984	74397985	rs7841768	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	8q21.11	NR	rs7841768-C	0.3981	2E-8				NR [9056863] (imputed)	N
1152	chr8	74435700	74435701	rs4383955	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	8q21.11		rs4383955-A	0.36	3E-8		5.56	z score increase	Affymetrix [9061022] (imputed)	N
1153	chr8	74467503	74467504	rs4342585	24144296	Cheng CY	2013-08-08	Am J Hum Genet	Nine loci for ocular axial length identified through genome-wide association studies, including shared loci with refractive error.	Axial length	12,531 European ancestry individuals	8,216 Asian ancestry individuals	8q21.11	STAU2	rs4342585-C	0.9826	9E-6		0.2559	[0.14-0.37] unit decrease	Illumina [2500000] (imputed)	N
1153	chr8	74497378	74497378	rs199722126	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	8q21.11	STAU2, UBE2W, TCEB1	rs199722126-?		6E-6	(additive)	0.163	[0.092-0.234] unit increase	Illumina [1492601] (imputed)	N
1153	chr8	74497378	74497378	rs199722126	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	8q21.11	STAU2, UBE2W, TCEB1	rs199722126-?		4E-7	(dominant)	0.205	[-0.089-0.499] unit increase	Illumina [1492601] (imputed)	N
1153	chr8	74497378	74497378	rs199722126	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	8q21.11	STAU2, UBE2W, TCEB1	rs199722126-?		2E-7	(heterogeneous)	0.215	[0.13-0.3] unit increase	Illumina [1492601] (imputed)	N
1153	chr8	74514212	74514213	rs9298231	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8q21.11	STAU2	rs9298231-A	NR	1E-10		0.0227755	[0.016-0.03] unit decrease	Affymetrix [321114] (imputed)	N
1153	chr8	74514212	74514213	rs9298231	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	8q21.11	STAU2	rs9298231-A	NR	2E-9		0.021197	[0.014-0.028] unit decrease	Affymetrix [321169] (imputed)	N
1153	chr8	74523297	74523298	rs7842195	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Hepatitis B	1,425 European ancestry cases, 218,180 European ancestry controls	NA	8q21.11	NR	rs7842195-?	NR	2E-6		0.1876	[0.11-0.27] unit decrease	Illumina [at least 560000] (imputed)	N
1153	chr8	74568098	74568099	rs28792187	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	8q21.11	NR	rs28792187-G	0.0729	4E-8		0.0414	[0.027-0.056] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1154	chr8	74678436	74678461	rs143339193	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	8q21.11		rs143339193-G	NR	1E-9		0.0223	[0.015-0.03] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1154	chr8	74685403	74685404	rs2046180	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in obese individuals	4,613 European ancestry male individuals, 4,690 European ancestry female individuals, 142 European ancestry individuals	NA	8q21.11	STAU2, UBE2W	rs2046180-G	0.2	8E-6	(women)	0.124	[0.069-0.179] kg/m2 decrease	Affymetrix, Illumina [at least 188473] (imputed)	N
1154	chr8	74689287	74689288	rs2170382	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	8q21.11	NA	rs2170382-T	0.1103	4E-11		0.0177	[0.012-0.023] unit increase	NR [~ 27400000] (imputed)	N
1155	chr8	74714868	74714869	rs145981104	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	8q21.11	NR	rs145981104-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
1155	chr8	74714868	74714869	rs145981104	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	8q21.11		rs145981104-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1155	chr8	74719495	74719496	rs117765079	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	8q21.11		rs117765079-C	NR	1E-8		0.0391	[0.026-0.053] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1155	chr8	74721124	74721125	rs75910605	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	8q21.11	NR	rs75910605-C	0.025359	2E-10		0.038385	[0.027-0.05] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1155	chr8	74824385	74824386	rs7842194	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	8q21.11	intergenic	rs7842194-A	0.779	3E-6		0.036	[0.02-0.052] unit decrease	Affymetrix [7947838] (imputed)	N
1156	chr8	74876292	74876293	rs72661853	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	8q21.11		rs72661853-T	NR	3E-11		0.0153	[0.011-0.02] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
1156	chr8	74881673	74881674	rs7013120	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	8q21.11	TCEB1	rs7013120-A	0.2637	4E-9		0.0139	[0.0092-0.0186] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1156	chr8	74888493	74888494	rs2306486	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	8q21.11	TMEM70	rs2306486-?	NR	4E-11		0.0181	[0.013-0.023] unit decrease	Affymetrix [5701386] (imputed)	N
1156	chr8	74894747	74894748	rs2291217	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	8q21.11		rs2291217-G	NR	1E-9		0.0143	[0.0098-0.0188] unit decrease	Affymetrix, Illumina [20521447] (imputed)	N
1156	chr8	74907294	74907295	rs62509311	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	8q21.11	LY96	rs62509311-A	0.717814	8E-11		0.00182742	[0.0013-0.0023] unit increase	Affymetrix [13995440] (imputed)	N
1156	chr8	74917083	74917084	rs6472812	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	8q21.11	LY96	rs6472812-G	0.951	8E-19	(Toll-like receptor 4:Lymphocyte antigen 96 complex, TLR4.LY96.3647.49.4)	0.5	[0.38-0.62] unit increase	Affymetrix [10572788] (imputed)	N
1156	chr8	74919712	74919713	rs10504554	26385043	Kertai MD	2015-06-17	Am Heart J	Genome-wide association study of new-onset atrial fibrillation after coronary artery bypass grafting surgery.	Postoperative atrial fibrillation in coronary artery bypass grafting surgery	620 European ancestry cases, 257 European ancestry controls	220 cases, 84 controls	8q21.11	LY96	rs10504554-A	0.82	4E-6		1.82	[1.01-3.23]	Illumina [524975]	N
1156	chr8	74926281	74926282	rs17324476	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8q21.11	TMEM70	rs17324476-?	NR	3E-6	(pantothenic acid)	0.73200333	[0.42-1.04] unit increase	Affymetrix [at least 2500000] (imputed)	N
1157	chr8	74983232	74983233	rs74859713	31324189	Kim W	2019-07-19	Respir Res	DSP variants may be associated with longitudinal change in quantitative emphysema.	Emphysema annual change measurement in smokers (adjusted lung density)	4,427 European ancestry individuals, 1,158 African American individuals	NA	8q21.11	LY96	rs74859713-T	0.03	3E-6	(EA)	0.29	[0.17-0.41] unit decrease	Illumina [NR] (imputed)	N
1157	chr8	75010232	75010233	rs7001413	24954085	Della-Morte D	2014-06-14	J Neurol Sci	Novel genetic variants modify the effect of smoking on carotid plaque burden in Hispanics.	Carotid plaque burden (smoking interaction)	665 Hispanic individuals	264 Hispanic indivduals	8q21.11	LY96, JPH1	rs7001413-T	0.08	5E-6		0.63	[0.36-0.90] unit decrease	Affymetrix [722379]	N
1157	chr8	75053465	75053466	rs34089445	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	8q21.11		rs34089445-A	0.99877	3E-8		0.338664	[0.22-0.46] unit increase	NR [11722792] (imputed)	N
1157	chr8	75089481	75089482	rs2936681	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	8q21.11	NR	rs2936681-?		3E-8	(Posterior limb of internal capsule)			NR [8955960] (imputed)	N
1157	chr8	75090667	75090667	rs71269978	34130359	Curtis SW	2021-06-15	Genet Epidemiol	FAT4 identified as a potential modifier of orofacial cleft laterality.	Left unilateral cleft lip	68 Asian ancestry cases, 78 European ancestry cases, 70 Hispanic cases, 1,626 controls	NA	8q21.11	NR	rs71269978-?		6E-6		2.15	[1.54-3.00]	Illumina [539473] (imputed)	N
1157	chr8	75092909	75092910	rs2977064	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	8q21.11	NR	rs2977064-?		9E-10				NR [7428630] (imputed)	N
1158	chr8	75119341	75119342	rs6472827	28836065	Hellwege JN	2017-08-23	Hum Genet	A multi-stage genome-wide association study of uterine fibroids in African Americans.	Uterine fibroids	3,999 African American cases, 4,764 African American controls	NA	8q21.11	JPH1	rs6472827-C	0.93	4E-7		1.3157895	[1.16-1.54]	Affymetrix, Illumina [17963051] (imputed)	N
1158	chr8	75132913	75132914	rs62521717	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8q21.11	NR	rs62521717-T	0.0122	6E-9	(HSPA6)	0.02696	NR unit increase	Illumina [1671387] (imputed)	N
1158	chr8	75179636	75179637	rs2977046	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	8q21.11		rs2977046-?	NR	3E-14				NR [~ 8900000] (imputed)	N
1158	chr8	75182796	75182797	rs536008226	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	8q21.11	NR	rs536008226-T	0.998717	1E-19		1.67465	[1.31-2.04] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1158	chr8	75214397	75214398	rs149265787	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	8q21.11	GDAP1	rs149265787-G	0.024	6E-10		1.14	[1.10-1.19]	Affymetrix, Illumina [11800000] (imputed)	N
1158	chr8	75220977	75220978	rs13257503	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	8q21.11	NR	rs13257503-?	NR	2E-9				Affymetrix [NR]	N
1159	chr8	75287083	75287084	rs78981075	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8q21.11	NR	rs78981075-C	0.01045	2E-8	(LGALS4)	0.6049	NR unit increase	Illumina [1671387] (imputed)	N
1159	chr8	75294974	75294975	rs4471028	17903300	Fox CS	2007-09-19	BMC Med Genet	Genome-wide association to body mass index and waist circumference: the Framingham Heart Study 100K project.	Waist circumference	1,079 European ancestry individuals from 310 families	NA	8q21.11	GDAP1	rs4471028-?	NR	2E-7				Affymetrix [70897]	N
1159	chr8	75295332	75295333	rs12546775	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Hippocampal volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	8q21.11	NR	rs12546775-?		3E-6				Illumina [4322238] (imputed)	N
1159	chr8	75341096	75341097	rs28493987	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	8q21.11	Intergenic	rs28493987-C	0.982	6E-7		0.234	NR unit increase	Illumina [NR] (imputed)	N
1160	chr8	75373947	75373948	rs16938910	22491018	Wang J	2012-04-10	Pharmacogenomics J	Genome-wide association analysis implicates the involvement of eight loci with response to tocilizumab for the treatment of rheumatoid arthritis.	Response to tocilizumab in rheumatoid arthritis	1,157 European and other ancestry rheumatoid arthritis cases	526 European and other ancestry rheumatoid arthritis cases	8q21.11	intergenic	rs16938910-?	0.011	4E-7	(CSJC , EA, RF+)	28.66	[NR] unit increase	Illumina [534053]	N
1160	chr8	75435310	75435311	rs189805869	27454463	Jones AV	2016-11-01	Pain	Genome-wide association analysis of pain severity in dysmenorrhea identifies association at chromosome 1p13.2, near the nerve growth factor locus.	Dysmenorrheic pain	1,785 European ancestry individuals with no pain, 3,478 European ancestry individuals with little pain, 4,208 European ancestry individuals with moderate pain, 2,420 European ancestry individuals with extreme pain	NA	8q21.11	GDAP1, PI15	rs189805869-G	0.007	7E-7		0.409	[0.247-0.571] unit decrease	Illumina [11942402] (imputed)	N
1160	chr8	75437630	75437631	rs189715677	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q21.11	NR	rs189715677-G	0.998192	4E-14				Affymetrix, Illumina [24588908] (imputed)	N
1160	chr8	75479623	75479624	rs13260300	27758888	Ingle JN	2016-10-10	Cancer Res	Genetic Polymorphisms in the Long Noncoding RNA MIR2052HG Offer a Pharmacogenomic Basis for the Response of Breast Cancer Patients to Aromatase Inhibitor Therapy.	Breast cancer-free interval (treatment with aromatase inhibitor)	6 African American recurrent cases, 134 African American controls without recurrence, 243 European ancestry recurrent cases, 4,216 European ancestry controls without recurrence, 3 Asian ancestry recurrent cases, 56 Asian ancestry controls without recurrence	NA	8q21.11	MIR2052HG, FLJ39080, LOC441355	rs13260300-?		2E-7		1.64	[1.35-2.00]	Illumina [~ 7400000] (imputed)	N
1161	chr8	75513133	75513134	rs6472866	18464913	Melzer D	2008-05-09	PLoS Genet	A genome-wide association study identifies protein quantitative trait loci (pQTLs).	Protein quantitative trait loci	1,200 European ancestry individuals	up to 4,590 European ancestry individuals	8q21.12	GDAP1, PI15	rs6472866-?	0.42	8E-7	(myoglobin)			Illumina [496032]	N
1161	chr8	75621142	75621143	rs6472873	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	8q21.13	NR	rs6472873-?	NR	5E-12				Affymetrix [NR]	N
1162	chr8	75731729	75731730	rs9650252	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	8q21.13	PI15	rs9650252-?		2E-13				Affymetrix, Illumina [NR] (imputed)	N
1163	chr8	75781817	75781818	rs9721183	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta minimum area	35,110 individuals	NA	8q21.13		rs9721183-C	0.633974	1E-13		0.0541534	[0.04-0.069] increase	Affymetrix [NR]	N
1163	chr8	75781817	75781818	rs9721183	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta maximum area	31,908 individuals	NA	8q21.13		rs9721183-C	0.634858	2E-9		0.048515	[0.033-0.064] increase	Affymetrix [NR]	N
1163	chr8	75819901	75819902	rs13262703	30677029	Riveros-McKay F	2019-01-24	PLoS Genet	Genetic architecture of human thinness compared to severe obesity.	Normal body mass index vs. thin	1,471 European ancestry thin adults, 6,460 European ancestry control adults	3,532 British ancestry thin individuals, up to 20,720 British ancestry controls	8q21.13	PI15	rs13262703-A	NR	5E-7		2.66	[1.81-3.89]	Illumina [41266535] (imputed)	N
1163	chr8	75881878	75881879	rs112408346	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Colon cancer	3,793 European ancestry cases, 410,350 European ancestry controls	NA	8q21.13		rs112408346-T	0.020995	3E-7		1.4218683	NR	Affymetrix [7846216] (imputed)	N
1163	chr8	75883053	75883054	rs2956605	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	8q21.13	CRISPLD1	rs2956605-A	NR	1E-8		0.0164947	[0.011-0.022] unit increase	Affymetrix [321016] (imputed)	N
1163	chr8	75883053	75883054	rs2956605	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	8q21.13	CRISPLD1	rs2956605-A	NR	2E-10		0.0200612	[0.014-0.026] unit increase	Affymetrix [323123] (imputed)	N
1163	chr8	75883053	75883054	rs2956605	33111402	Tan MMX	2020-10-28	Mov Disord	Genome-Wide Association Studies of Cognitive and Motor Progression in Parkinson's Disease.	Parkinson's disease progression (cognitive)	2,788 individuals	NA	8q21.13	CRISPLD1	rs2956605-A	NR	4E-6		0.17	[0.092-0.248] unit decrease	Illumina [5918868] (imputed)	N
1163	chr8	75883053	75883054	rs2956605	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	8q21.13		rs2956605-?	NR	4E-51				NR [~ 8900000] (imputed)	N
1163	chr8	75886296	75886297	rs2925155	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	8q21.13	intergenic	rs2925155-T	0.2612	5E-12		0.015	[0.011-0.019] unit decrease	Affymetrix [18391927] (imputed)	N
1164	chr8	75903203	75903204	rs7842169	30134085	Zhang H	2018-07-01	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of cognitive flexibility assessed by the Wisconsin Card Sorting Test.	Cognitive flexibility	2,589 African American individuals, 2,284 European ancestry individuals	NA	8q21.13	CRISPLD1	rs7842169-?	NR	5E-6	(AA)			Illumina [9722417] (imputed)	N
1164	chr8	75928946	75928947	rs117978872	34737440	Lona-Durazo F	2021-11-04	Commun Biol	A large Canadian cohort provides insights into the genetic architecture of human hair colour.	Brown vs. black hair color	10,990 European ancestry individuals	NA	8q21.13		rs117978872-C	NR	6E-7		1.1813	[0.72-1.64] increase	Affymetrix, Illumina [32876187] (imputed)	N
1164	chr8	75946694	75946695	rs13248650	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	8q21.13	NR	rs13248650-?	NR	9E-11				Affymetrix [~ 8270000] (imputed)	N
1164	chr8	75991658	75991659	rs555921670	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	8q21.13		rs555921670-?	NR	2E-13				NR [~ 8900000] (imputed)	N
1164	chr8	75999095	75999096	rs117598310	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Optic cup area	20,353 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	7,333 Asian ancestry individuals	8q21.13	CRISPLD1	rs117598310-T	NR	2E-6		0.021	[0.013-0.029] unit increase	Affymetrix, Illumina [~ 8000000] (imputed)	N
1164	chr8	75999095	75999096	rs117598310	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Optic cup area	20,353 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	7,333 Asian ancestry individuals	8q21.13	CRISPLD1	rs117598310-T	NR	1E-8	(EA)	0.031	[0.021-0.041] unit increase	Affymetrix, Illumina [~ 8000000] (imputed)	N
1164	chr8	76003530	76003531	rs13274059	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8q21.13	CRISPLD1	rs13274059-C	NR	2E-8		0.0165701	[0.011-0.022] unit decrease	Affymetrix [321114] (imputed)	N
1164	chr8	76012472	76012472	rs71300663	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8q21.13	CRISPLD1	rs71300663-GTTTGTTGTAGTAGTTGTAGATTTGTTATA	NR	1E-8		0.0191502	[0.013-0.026] unit decrease	Affymetrix [321114] (imputed)	N
1165	chr8	76036443	76036444	rs1531590	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	8q21.13	NR	rs1531590-C	0.227292733303651	3E-6	(IGP26)	0.1794	[0.1-0.25] unit decrease	Illumina [~ 2500000] (imputed)	N
1165	chr8	76054903	76054904	rs1350100	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	8q21.13	CRISPLD1, HNF4G	rs1350100-A		4E-9		0.152	unit increase	Affymetrix [at least 2696785] (imputed)	N
1165	chr8	76083246	76083247	rs183191361	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	8q21.13	Intergenic	rs183191361-T	0.999	6E-7	(AA)	0.444	unit increase	Illumina [NR] (imputed)	N
1165	chr8	76119617	76119618	rs67983734	33717105	Donkel SJ	2021-02-24	Front Immunol	Common and Rare Variants Genetic Association Analysis of Circulating Neutrophil Extracellular Traps.	Myeloperoxidase-DNA complexes	5,590 European ancestry individuals	NA	8q21.13	CASC9	rs67983734-T		4E-6		0.27	[0.15-0.39] unit decrease	Illumina [11789982] (imputed)	N
1165	chr8	76123782	76123783	rs139049023	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Subjective well-being	298,420 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	8q21.13	NR	rs139049023-A	0.9936	7E-7		0.098116495	[0.059-0.137] unit increase	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
1165	chr8	76147953	76147954	rs16939046	21130836	Luciano M	2010-12-03	Biol Psychol	Whole genome association scan for genetic polymorphisms influencing information processing speed.	Information processing speed	Up to 4,039 European ancestry individuals	NA	8q21.13	AC022274.1	rs16939046-T	0.09	4E-6	(4-choice RT)	0.22	[0.12-0.32] unit increase	Illumina [~ 610000]	N
1165	chr8	76148017	76148018	rs72656192	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	8q21.13		rs72656192-?	NR	5E-10				NR [~ 8900000] (imputed)	N
1166	chr8	76211332	76211333	rs192994403	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	8q21.13	Intergenic	rs192994403-C	0.999	2E-7	(AA)	0.441	unit increase	Illumina [NR] (imputed)	N
1166	chr8	76211332	76211333	rs192994403	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	8q21.13	Intergenic	rs192994403-C	0.999	3E-6	(AA)	1.985	NR unit increase	Illumina [NR] (imputed)	N
1166	chr8	76225515	76225516	rs17373728	26305897	Iyengar SK	2015-08-25	PLoS Genet	Genome-Wide Association and Trans-ethnic Meta-Analysis for Advanced Diabetic Kidney Disease: Family Investigation of Nephropathy and Diabetes (FIND).	Diabetic kidney disease	up to 1,564 African American cases, 369  African American diabetic controls, 1,288 African American non-diabetic controls, 538 American Indian ancestry cases, 319 American Indian ancestry diabetic controls, 342 European ancestry cases, 404 European ancestry diabetic controls, 779 Mexican ancestry cases, 594 Mexican ancestry diabetic controls	NA	8q21.13	NR	rs17373728-C	NR	2E-6	(additive)	1.34	1.19-1.52	Affymetrix [NR]	N
1166	chr8	76230300	76230301	rs6472903	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	8q21.13		rs6472903-T	NR	1E-23		1.08	[1.07-1.1]	Affymetrix, Illumina [NR] (imputed)	N
1166	chr8	76230300	76230301	rs6472903	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	8q21.13	intergenic	rs6472903-T	0.83	4E-21	(EA)	1.0638298	[1.04-1.09] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
1166	chr8	76230300	76230301	rs6472903	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	46,785 European ancestry cases, 42,892 European ancestry controls	NA	8q21.13	NR	rs6472903-T	0.8200000000000001	3E-13		1.098901	[1.08-1.12]	Affymetrix, Illumina [~ 14000000] (imputed)	N
1166	chr8	76230300	76230301	rs6472903	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	15,748 European ancestry cases, 18,084 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls	8q21.13	NR	rs6472903-T	0.82	1E-16		1.098901	[1.08-1.12]	Affymetrix, Illumina [~ 11600000] (imputed)	N
1166	chr8	76230300	76230301	rs6472903	23535729	Michailidou K	2013-04-01	Nat Genet	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	8q21.13	intergenic	rs6472903-T	0.82	2E-17		1.1	[1.08-1.12]	Affymetrix, Illumina [~ 2600000] (imputed)	N
1166	chr8	76235764	76235765	rs13250517	34592243	Nusinovici S	2021-09-27	Ophthalmology	High-density lipoprotein 3 cholesterol and primary open-angle glaucoma: metabolomics and mendelian randomization analyses.	High-density lipoprotein 3 cholesterol levels	2,308 Chinese ancestry individuals, 2,528 Indian ancestry individuals, 2,521 Malays ancestry individuals, 10,984 Finnish ancestry individuals	NA	8q21.13		rs13250517-T	NR	4E-6		0.078	unit decrease	Illumina [NR] (imputed)	N
1167	chr8	76296307	76296308	rs74717330	30514930	Mukherjee S	2018-12-04	Mol Psychiatry	Genetic data and cognitively defined late-onset Alzheimer's disease subgroups.	Alzheimer's disease with multiple cognitive domain impairments	Up to 248 European ancestry cases, 3,447 European ancestry controls	NA	8q21.13	NR	rs74717330-A	0.05	2E-6		3.09	[2.62-3.56]	NR [up to 6398204] (imputed)	N
1167	chr8	76301609	76301610	rs2926614	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	8q21.13	NR	rs2926614-T	0.1809	4E-12		0.022405317	[0.016-0.029] unit decrease	Affymetrix [10549349] (imputed)	N
1167	chr8	76305784	76305785	rs72658071	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	8q21.13	NR	rs72658071-T	0.0877	3E-28	(EA)	0.1182	[0.097-0.139] unit increase	Illumina [~ 11800000] (imputed)	N
1167	chr8	76319165	76319166	rs117628011	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	8q21.13	intergenic	rs117628011-A	0.054	5E-6		3.06	[1.85-5.04]	Illumina [1556551]	N
1167	chr8	76322361	76322362	rs72658080	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	8q21.13		rs72658080-G	NR	9E-8		1.112347	[1.07-1.16]	Affymetrix [7846216] (imputed)	N
1167	chr8	76355874	76355875	rs830786	29907492	Nakahara S	2018-06-12	Schizophr Res	Polygenic risk score, genome-wide association, and gene set analyses of cognitive domain deficits in schizophrenia.	Attention function	2 Alaskan native ancestry schizophrenia cases, 18 Asian ancestry schizophrenia cases, 20 African American schizophrenia cases, 1 Native Hawaiian ancestry schizophrenia cases, 86 European ancestry schizophrenia cases, 2 Alaskan native ancestry controls, 10 Asian ancestry controls, 17 African American controls, 1 Native Hawaiian ancestry controls, 106 European ancestry controls	NA	8q21.13	HNF4G	rs830786-T		5E-8		1.5	[NR] unit decrease	Illumina [NR] (imputed)	N
1167	chr8	76360636	76360637	rs189268208	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Breast cancer	17,881 European ancestry cases, 410,350 European ancestry controls	NA	8q21.13		rs189268208-G	NR	7E-10		1.1225865	NR	Affymetrix [7846216] (imputed)	N
1167	chr8	76362031	76362032	rs77143074	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	153,512 East Asian ancestry individuals	NA	8q21.13		rs77143074-A	0.159178	2E-8		0.0244967	[0.016-0.033] unit decrease	Illumina [13479135] (imputed)	N
1167	chr8	76410667	76410668	rs1096389	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	8q21.13	NR	rs1096389-?	NR	5E-15				Affymetrix [~ 8270000] (imputed)	N
1167	chr8	76410860	76410861	rs2926585	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	8q21.13	NR	rs2926585-G	0.0762	3E-24	(EA)	0.1156	[0.093-0.138] unit increase	Illumina [~ 11800000] (imputed)	N
1168	chr8	76417936	76417937	rs2943559	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	8q21.13		rs2943559-A	NR	7E-19		0.91	[0.9-0.93]	Affymetrix, Illumina [NR] (imputed)	N
1168	chr8	76417936	76417937	rs2943559	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	8q21.13	HNF4G	rs2943559-G	0.08	4E-24	(EA)	1.1	[1.07-1.14] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
1168	chr8	76417936	76417937	rs2943559	29058716	Milne RL	2017-10-23	Nat Genet	Identification of ten variants associated with risk of estrogen-receptor-negative breast cancer.	Breast cancer (estrogen-receptor negative)	14,135 European ancestry cases, 58,126 European ancestry controls	7,333 European ancestry cases, 42,468 European ancestry controls	8q21.13	NR	rs2943559-G	0.08	3E-6		1.1	[1.04-1.16] (Oncoarray)	Illumina [~ 11500000] (imputed)	N
1168	chr8	76417936	76417937	rs2943559	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	46,785 European ancestry cases, 42,892 European ancestry controls	NA	8q21.13	NR	rs2943559-G	0.07	7E-11		1.13	[1.09-1.17]	Affymetrix, Illumina [~ 14000000] (imputed)	N
1168	chr8	76417936	76417937	rs2943559	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	15,748 European ancestry cases, 18,084 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls	8q21.13	NR	rs2943559-G	0.07	1E-16		1.13	[1.09-1.17]	Affymetrix, Illumina [~ 11600000] (imputed)	N
1168	chr8	76417936	76417937	rs2943559	23535729	Michailidou K	2013-04-01	Nat Genet	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	8q21.13	HNF4G	rs2943559-G	0.07	6E-15		1.13	[1.09-1.17	Affymetrix, Illumina [~ 2600000] (imputed)	N
1168	chr8	76419045	76419046	rs2943568	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	8q21.13	NR	rs2943568-A	NR	3E-11		0.0287	[0.02-0.037] unit increase	Affymetrix [9000000] (imputed)	N
1168	chr8	76443462	76443463	rs2941456	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Isoleucine levels	115,079 European ancestry individuals	NA	8q21.13		rs2941456-G	0.801561	1E-8		0.0290201	[0.019-0.039] unit decrease	NR [11722792] (imputed)	N
1168	chr8	76454024	76454025	rs2977929	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total concentration of branched-chain amino acids (leucine + isoleucine + valine)	115,051 European ancestry individuals	NA	8q21.13		rs2977929-C	0.803231	1E-8		0.0289356	[0.019-0.039] unit decrease	NR [11722792] (imputed)	N
1168	chr8	76454024	76454025	rs2977929	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Leucine levels	115,078 European ancestry individuals	NA	8q21.13		rs2977929-C	0.803226	1E-8		0.028423	[0.019-0.038] unit decrease	NR [11722792] (imputed)	N
1168	chr8	76458570	76458571	rs184639867	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q21.13	NR	rs184639867-C	0.999212	3E-12				Affymetrix, Illumina [24588908] (imputed)	N
1168	chr8	76462546	76462547	rs1828911	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	8q21.13	HNF4G	rs1828911-T	0.5803	1E-15	(East Asian)	0.0466	[0.035-0.058] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1168	chr8	76462546	76462547	rs1828911	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals	at least 101,293 European ancestry individuals	8q21.13	HNF4G	rs1828911-T	0.575	8E-21	(Japanese)	0.038	[0.03-0.046] unit decrease	Illumina [5864938] (imputed)	N
1168	chr8	76462546	76462547	rs1828911	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum uric acid levels	109,029 Japanese ancestry individuals	NA	8q21.13	HNF4G	rs1828911-?	NR	2E-18		0.03728	[0.029-0.046] unit increase novel	Illumina [6108953] (imputed)	N
1168	chr8	76465908	76465909	rs2941465	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	8q21.13		rs2941465-T	NR	2E-12		0.0135	[0.0098-0.0172] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
1168	chr8	76465908	76465909	rs2941465	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	8q21.13	HNF4G	rs2941465-C	0.564997	1E-19		0.00460184	[0.0036-0.0056] unit increase	Affymetrix [13995440] (imputed)	N
1168	chr8	76465908	76465909	rs2941465	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	8q21.13	HNF4G	rs2941465-T	0.435008	3E-9		0.013170611	[0.0088-0.0175] unit decrease	Affymetrix [93095623] (imputed)	N
1168	chr8	76465908	76465909	rs2941465	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	8q21.13		rs2941465-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1168	chr8	76470403	76470404	rs2941471	29422604	Klein AP	2018-02-08	Nat Commun	Genome-wide meta-analysis identifies five new susceptibility loci for pancreatic cancer.	Pancreatic cancer	9,040 European ancestry cases, 12,496 European ancestry controls	up to 2,737 cases, up to 4,752 controls	8q21.13	HNF4G	rs2941471-A	0.5700000000000001	7E-10		1.1235955	[1.08-1.18]	Illumina [11381182] (imputed)	N
1168	chr8	76472258	76472259	rs73692609	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	8q21.13	NR	rs73692609-T	NR	3E-9		0.0305	[0.021-0.04] unit increase	Affymetrix [9000000] (imputed)	N
1168	chr8	76474718	76474719	rs2977944	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	129,405 East Asian ancestry individuals	NA	8q21.13		rs2977944-A	0.437233	3E-19		0.03163	[0.025-0.039] unit increase	Illumina [13475706] (imputed)	N
1168	chr8	76474718	76474719	rs2977944	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	8q21.13		rs2977944-A	NR	7E-10		0.0105	[0.0072-0.0138] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
1168	chr8	76474718	76474719	rs2977944	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	8q21.13		rs2977944-A	NR	1E-11		0.0112	[0.0079-0.0145] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
1168	chr8	76477589	76477590	rs1515020	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q21.13	NR	rs1515020-T	0.471307	3E-13				Affymetrix, Illumina [24332387] (imputed)	N
1168	chr8	76477589	76477590	rs1515020	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q21.13	NR	rs1515020-T	0.471578	8E-15				Affymetrix, Illumina [24653286] (imputed)	N
1168	chr8	76477589	76477590	rs1515020	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q21.13	NR	rs1515020-T	0.472973	3E-18				Affymetrix, Illumina [24558453] (imputed)	N
1168	chr8	76478767	76478768	rs2941484	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	8q21.13		rs2941484-T	NR	1E-71		0.0318	[0.028-0.035] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
1168	chr8	76478767	76478768	rs2941484	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	8q21.13	NR	rs2941484-T	0.45	2E-68		0.0322	[0.029-0.036] unit increase	NR [NR]	N
1168	chr8	76478767	76478768	rs2941484	31985003	Boocock J	2020-01-27	Hum Mol Genet	Genomic dissection of 43 serum urate-associated loci provides multiple insights into molecular mechanisms of urate control.	Urate levels	110,238 European ancestry individuals, 21,471 East Asian individuals	NA	8q21.13	HNF4G	rs2941484-C		8E-22		0.049	[0.039-0.059] mg/dl increase	NR [NR] (imputed)	N
1168	chr8	76478767	76478768	rs2941484	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals, at least 88,461 European ancestry individuals	NA	8q21.13	HNF4G	rs2941484-T	0.441	5E-19	(EA)	0.035	[0.027-0.043] unit increase	Illumina [1986983] (imputed)	N
1168	chr8	76478767	76478768	rs2941484	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals, at least 88,461 European ancestry individuals	NA	8q21.13	HNF4G	rs2941484-T	0.4341	1E-20	(Japanese)	0.0375	[0.03-0.045] unit increase	Illumina [1986983] (imputed)	N
1168	chr8	76478767	76478768	rs2941484	23263486	Kottgen A	2012-12-23	Nat Genet	Genome-wide association analyses identify 18 new loci associated with serum urate concentrations.	Urate levels	49,825 European ancestry males, 60,522 European ancestry females	Up to 32,813 European ancestry individuals	8q21.13	HNF4G	rs2941484-T	0.44	4E-17		0.044	[0.034-0.054] mg/dl increase	Affymetrix, Illumina, Perlegen [2450547] (imputed)	N
1168	chr8	76479838	76479839	rs2943539	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	8q21.13	HNF4G	rs2943539-T	0.4754	6E-28		0.04144	[0.034-0.049] mg/dL increase	Affymetrix, Illumina [8217339] (imputed)	N
1168	chr8	76480349	76480350	rs2941487	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	8q21.13	HNF4G	rs2941487-T	0.5288	6E-44		0.0425	[0.036-0.049] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1168	chr8	76480349	76480350	rs2941487	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	8q21.13	NR	rs2941487-T	0.464	3E-28	(women)	0.0486	[0.04-0.057] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1168	chr8	76480349	76480350	rs2941487	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	8q21.13	NR	rs2941487-T	0.4569	2E-13	(men)	0.0359	[0.026-0.046] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1168	chr8	76480506	76480507	rs2941488	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	8q21.13	NR	rs2941488-A	0.475103	5E-12		0.012802	[0.0092-0.0164] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1168	chr8	76480506	76480507	rs2941488	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	8q21.13	NR	rs2941488-A	0.474797	1E-16		0.015315	[0.012-0.019] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
1168	chr8	76483238	76483239	rs1913641	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	8q21.13	HNF4G	rs1913641-T	0.4975	5E-8		0.0018	[0.0012-0.0024] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
1168	chr8	76483238	76483239	rs1913641	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	8q21.13	HNF4G	rs1913641-T	0.4778	7E-8		0.002	[0.0014-0.0026] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
1168	chr8	76485708	76485709	rs2941490	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	8q21.13		rs2941490-A	NR	3E-10		0.0154	[0.011-0.02] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
1168	chr8	76490317	76490318	rs938342	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	8q21.13		rs938342-C	NR	6E-9		0.014	[0.0093-0.0187] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
1168	chr8	76492245	76492246	rs2943557	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	8q21.13		rs2943557-G	0.807189	1E-8		0.0280065	[0.018-0.038] unit decrease	NR [11722792] (imputed)	N
1168	chr8	76493713	76493714	rs1399562	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	8q21.13		rs1399562-T	0.192382	8E-11		0.018270873	[0.013-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1168	chr8	76493713	76493714	rs1399562	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	8q21.13		rs1399562-T	0.192361	3E-11		0.018717315	[0.013-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1168	chr8	76517181	76517182	rs1375647	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	8q21.13	NR	rs1375647-A	0.191821	7E-15		0.018239	[0.014-0.023] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
1168	chr8	76525585	76525586	rs2941428	34719683	Park JS	2021-11-01	J Hum Genet	Genome-wide meta-analysis revealed several genetic loci associated with serum uric acid levels in Korean population: an analysis of Korea Biobank data.	Serum uric acid levels	60,585 Korean ancestry individuals	NA	8q21.13		rs2941428-A	0.44	3E-20		0.0551	increase	NR [7104359] (imputed)	N
1168	chr8	76525585	76525586	rs2941428	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	8q21.13		rs2941428-?	NR	3E-11				NR [~ 8900000] (imputed)	N
1168	chr8	76532218	76532219	rs2941432	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		8q21.13	HNF4G	rs2941432-T	0.527512	1E-8		0.00801304	[0.0053-0.0108] unit decrease	Affymetrix [12370749]	N
1168	chr8	76532218	76532219	rs2941432	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	8q21.13	NR	rs2941432-?	NR	3E-10				Affymetrix [~ 8270000] (imputed)	N
1168	chr8	76538832	76538833	rs200255906	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	8q21.13	NR	rs200255906-A	0.081	2E-14	(EA)	0.0911	[0.068-0.114] unit increase	Illumina [~ 11800000] (imputed)	N
1169	chr8	76572452	76572453	rs16939126	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	8q21.13		rs16939126-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1169	chr8	76573710	76573711	rs2922763	20935630	Speliotes EK	2010-10-10	Nat Genet	Association analyses of 249,796 individuals reveal 18 new loci associated with body mass index.	Body mass index	Up to 123,865 European ancestry individuals	Up to 125,931 European ancestry individuals	8q21.13	HNF4G	rs2922763-T	0.71	6E-8				Affymetrix, Illumina, Perlegen [~ 2800000] (imputed)	N
1169	chr8	76584398	76584399	rs188888733	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	8q21.13	HNF4G	rs188888733-T	0.0021	4E-6		0.6398	[0.37-0.91] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1169	chr8	76588177	76588178	rs66983327	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	8q21.13	Intergenic	rs66983327-A	0.3246	3E-8	(MTAG)	0.0077	[0.005-0.0104] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1169	chr8	76591251	76591252	rs12235100	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	8q21.13	NR	rs12235100-?	NR	5E-8				Affymetrix [~ 8270000] (imputed)	N
1169	chr8	76591879	76591880	rs1449544	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	8q21.13		rs1449544-C	NR	1E-17		0.0156	[0.012-0.019] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
1169	chr8	76591879	76591880	rs1449544	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	8q21.13	intergenic	rs1449544-A	0.5109	4E-11		0.2185	[0.15-0.28] mmHg increase	Affymetrix [NR] (imputed)	N
1169	chr8	76591879	76591880	rs1449544	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	8q21.13	intergenic	rs1449544-A	0.5121	4E-24		0.2502	[0.2-0.3] mmHg increase	Affymetrix [NR] (imputed)	N
1169	chr8	76591879	76591880	rs1449544	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	8q21.13	HNF4G, ZFHX4-AS1	rs1449544-A		7E-6		0.171	unit increase	Affymetrix [at least 2696785] (imputed)	N
1169	chr8	76591879	76591880	rs1449544	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	8q21.13	HNF4G, ZFHX4-AS1	rs1449544-A		6E-7	(EA)	0.199	unit increase	Affymetrix [at least 2696785] (imputed)	N
1169	chr8	76591879	76591880	rs1449544	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	8q21.13	HNF4G, ZFHX4-AS1	rs1449544-A		1E-7		0.191	unit increase	Affymetrix [at least 2696785] (imputed)	N
1169	chr8	76591879	76591880	rs1449544	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	8q21.13	HNF4G, ZFHX4-AS1	rs1449544-A		3E-15		0.2	unit increase	Affymetrix [at least 2696785] (imputed)	N
1169	chr8	76599764	76599765	rs2588791	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	8q21.13	NR	rs2588791-?	NR	5E-9				Affymetrix [~ 8270000] (imputed)	N
1169	chr8	76615662	76615663	rs4735692	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	8q21.13	NR	rs4735692-A	NR	7E-17		0.024	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
1169	chr8	76615662	76615663	rs4735692	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry  class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry class I obese individuals, 5,476 European ancestry class II obese individuals, 1,162 European ancestry class III obese individuals, up to 39,294 European ancestry controls	8q21.13	HNF4G	rs4735692-A	0.58	4E-10	(Overweight)	1.04	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
1169	chr8	76615662	76615663	rs4735692	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry  class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry class I obese individuals, 5,476 European ancestry class II obese individuals, 1,162 European ancestry class III obese individuals, up to 39,294 European ancestry controls	8q21.13	HNF4G	rs4735692-A	0.58	2E-9	(Obesity class I)	1.06	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
1169	chr8	76636190	76636191	rs2588785	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	8q21.13	NA	rs2588785-A	0.2819	2E-28		0.0201	[0.017-0.024] unit decrease	NR [~ 27400000] (imputed)	N
1169	chr8	76639758	76639759	rs6472936	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	8q21.13		rs6472936-T	0.7788	5E-12		0.018	[0.012-0.024] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
1169	chr8	76648027	76648028	rs185956466	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	8q21.13		rs185956466-T	0.266081	3E-12		0.022504	[0.016-0.029] unit increase	Illumina [13479924] (imputed)	N
1169	chr8	76648027	76648028	rs185956466	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	163,835 East Asian ancestry individuals	NA	8q21.13		rs185956466-T	0.266037	2E-10		0.0241414	[0.017-0.032] unit increase	Illumina [13479178] (imputed)	N
1169	chr8	76653155	76653156	rs16939162	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	8q21.13	HNF4G, ZFHX4	rs16939162-A	0.8304	1E-14		1.0354		Affymetrix [11880941] (imputed)	N
1169	chr8	76653155	76653156	rs16939162	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	8q21.13	HNF4G, ZFHX4	rs16939162-A	0.8304	1E-14		1.0387312		Affymetrix [11880941] (imputed)	N
1169	chr8	76653155	76653156	rs16939162	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	8q21.13		rs16939162-?	NR	9E-10				NR [~ 8900000] (imputed)	N
1169	chr8	76660224	76660225	rs2596121	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	8q21.13		rs2596121-G	0.59	6E-16				NR [NR] (imputed)	N
1169	chr8	76660224	76660225	rs2596121	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	8q21.13		rs2596121-G	0.59	4E-20		0.014	% increase	NR [NR] (imputed)	N
1169	chr8	76663880	76663881	rs7844233	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	8q21.13	NR	rs7844233-G	0.0642	6E-11	(EA)	0.0813	[0.057-0.106] unit increase	Illumina [~ 11800000] (imputed)	N
1170	chr8	76696975	76696976	rs2977329	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	8q21.13	NR	rs2977329-?	NR	7E-11				Affymetrix [~ 8270000] (imputed)	N
1170	chr8	76697033	76697034	rs28857569	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	8q21.13	HNF4G, LINC01111	rs28857569-C	0.315	2E-9	(Japanese)	0.023	[0.015-0.031] unit increase	Illumina [6108953] (imputed)	N
1170	chr8	76700617	76700618	rs72663537	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Ease of getting up in the morning	385,949 European ancestry individuals	NA	8q21.13	NR	rs72663537-G	0.1295	3E-8		0.0143	[0.0092-0.0194] unit decrease	Affymetrix, Illumina [10862568] (imputed)	N
1170	chr8	76713408	76713409	rs2920917	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	8q21.13		rs2920917-?	NR	1E-12				NR [~ 8900000] (imputed)	N
1170	chr8	76716736	76716737	rs2977324	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls, 49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	8q21.13		rs2977324-G	NR	2E-13		0.0448	[0.033-0.057] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1170	chr8	76716736	76716737	rs2977324	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls	NA	8q21.13	AC016194.1	rs2977324-T	0.298571	4E-8		0.04855126	[0.031-0.066] unit decrease	Affymetrix [7288503] (imputed)	N
1170	chr8	76716736	76716737	rs2977324	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	8q21.13		rs2977324-?	NR	9E-11				NR [~ 8900000] (imputed)	N
1170	chr8	76721609	76721610	rs2977321	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	8q21.13		rs2977321-T	NR	2E-25		0.0209	[0.017-0.025] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1170	chr8	76752789	76752790	rs1531462	25625606	Mather KA	2015-01-27	PLoS One	Investigating the genetics of hippocampal volume in older adults without dementia.	Hippocampal atrophy	325 European ancestry older adult individuals	NA	8q21.13	intergenic	rs1531462-?		9E-6				Affymetrix [at least 734550] (imputed)	N
1170	chr8	76754262	76754263	rs10957776	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	8q21.13		rs10957776-C	NR	7E-20		0.016	[0.013-0.019] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1170	chr8	76767475	76767476	rs1381666	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	8q21.13	HNF4G	rs1381666-C	0.3216	2E-10		0.016126772	[0.011-0.021] unit decrease	Affymetrix [11515109] (imputed)	N
1170	chr8	76769595	76769596	rs10096794	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	8q21.13	NR	rs10096794-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1170	chr8	76786940	76786941	rs12678759	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	8q21.13	NR	rs12678759-?	NR	8E-26				Affymetrix [~ 8270000] (imputed)	N
1170	chr8	76806583	76806584	rs17405819	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	8q21.13	NA	rs17405819-T	0.6845	6E-33		0.0211	[0.018-0.025] unit increase	NR [~ 27400000] (imputed)	N
1170	chr8	76806583	76806584	rs17405819	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	8q21.13	NA	rs17405819-T	0.6845	6E-33		0.0211	[0.018-0.025] unit increase	NR [~ 27400000] (imputed)	N
1170	chr8	76806583	76806584	rs17405819	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	8q21.13	NR	rs17405819-T	NR	9E-20		0.025	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
1170	chr8	76806583	76806584	rs17405819	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	8q21.13	HNF4G, LINC01111	rs17405819-C	0.29	8E-19		0.022	[0.018-0.026] unit decrease	Illumina [6108953] (imputed)	N
1170	chr8	76806583	76806584	rs17405819	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically inactive individuals	561 African American women, 352 Filipino ancestry women, 725 Indian ancestry women, 19,366 European ancestry women, 251 African American men, 4,654 Indian ancestry men, 11,727 European ancestry men, 959 European ancestry individuals	1,437 African American women, 5,184 European ancestry women, 64 African American men, 5,416 European ancestry men	8q21.13	HNF4G	rs17405819-T	0.6974	2E-6	(EA)	0.0391	[0.023-0.055] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1170	chr8	76806583	76806584	rs17405819	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	8q21.13	HNF4G	rs17405819-T	0.6998	4E-6	(EA)	0.0206	[0.012-0.029] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1170	chr8	76806583	76806584	rs17405819	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	8q21.13	HNF4G	rs17405819-?	NR	8E-9				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1170	chr8	76806583	76806584	rs17405819	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	8q21.13	HNF4G	rs17405819-?	NR	5E-6	(EA, women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1170	chr8	76806583	76806584	rs17405819	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	8q21.13	HNF4G	rs17405819-?	NR	3E-10	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1170	chr8	76806583	76806584	rs17405819	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	8q21.13	HNF4G	rs17405819-T	0.7029	5E-6	(women)	0.0226	[0.013-0.032] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1170	chr8	76806583	76806584	rs17405819	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	8q21.13	HNF4G	rs17405819-T	0.6998	4E-6	(EA, women)	0.0239	[0.014-0.034] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1170	chr8	76806583	76806584	rs17405819	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	8q21.13	HNF4G	rs17405819-T	0.6998	2E-9	(EA)	0.0244	[0.017-0.032] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1170	chr8	76806583	76806584	rs17405819	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	8q21.13	HNF4G	rs17405819-T	0.7022	8E-6	(women)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1170	chr8	76806583	76806584	rs17405819	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	8q21.13	HNF4G	rs17405819-T	0.7022	2E-8				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1170	chr8	76806583	76806584	rs17405819	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in non-smokers	77,279 European ancestry women, 47,280 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	8q21.13	HNF4G	rs17405819-T	0.7022	1E-6		0.0192	[0.011-0.027] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1170	chr8	76806583	76806584	rs17405819	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	8q21.13	HNF4G	rs17405819-T	0.7022	7E-8		0.019	[0.012-0.026] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1170	chr8	76806583	76806584	rs17405819	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	8q21.13	NR	rs17405819-T	0.698598932727065	6E-16		0.023545315	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1170	chr8	76806583	76806584	rs17405819	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	8q21.13	HNF4G	rs17405819-T	0.702	1E-11		0.022	[0.016-0.029] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1170	chr8	76806583	76806584	rs17405819	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	8q21.13	HNF4G	rs17405819-T	0.7	2E-6	(EA, men)	0.021	[0.012-0.029] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1170	chr8	76806583	76806584	rs17405819	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	8q21.13	HNF4G	rs17405819-T	0.7	2E-11	(EA)	0.022	[0.016-0.029] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1170	chr8	76806583	76806584	rs17405819	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	8q21.13	HNF4G	rs17405819-T	0.699	1E-8	(EA, women)	0.024	[0.016-0.033] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1171	chr8	76810222	76810223	rs12546319	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	8q21.13		rs12546319-T	NR	4E-16		0.0157	[0.012-0.019] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1171	chr8	76817263	76817264	rs183826639	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	8q21.13	Intergenic	rs183826639-T	NR	1E-12	(within families)	7.098	unit increase	Affymetrix [up to 15107142] (imputed)	N
1171	chr8	76822137	76822138	rs17321432	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	8q21.13		rs17321432-?	NR	8E-9				NR [~ 8900000] (imputed)	N
1171	chr8	76825852	76825853	rs12548773	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	8q21.13		rs12548773-T	NR	1E-12		0.0145	[0.011-0.018] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
1171	chr8	76827189	76827190	rs6472942	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	8q21.13	NR	rs6472942-?		2E-9		0.0131633	[0.0089-0.0175] unit decrease	Affymetrix [19400418] (imputed)	N
1171	chr8	76829892	76829893	rs67529638	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	145,505 East Asian ancestry individuals	NA	8q21.13		rs67529638-G	0.393283	3E-8		0.0189072	[0.012-0.026] unit decrease	Illumina [13477770] (imputed)	N
1171	chr8	76829892	76829893	rs67529638	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	8q21.13	snoU13	rs67529638-G	0.348627	2E-11		0.04279436	[0.03-0.055] unit decrease	Affymetrix [7288503] (imputed)	N
1171	chr8	76830639	76830640	rs66500717	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	8q21.13		rs66500717-G	NR	3E-13		0.037	[0.027-0.047] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1171	chr8	76851081	76851082	rs6472945	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	8q21.13	NR	rs6472945-?	NR	7E-7		0.0086897	[0.0053-0.0121] unit decrease	Affymetrix [805426] (imputed)	N
1171	chr8	76860026	76860027	rs66576886	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	8q21.13	NR	rs66576886-A	0.3949	8E-12	(East Asian)	0.4343	[0.31-0.56] unit decrease	Illumina [6200000] (imputed)	N
1171	chr8	76860026	76860027	rs66576886	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	8q21.13	NR	rs66576886-A	0.3949	2E-11	(East Asian)	0.3012	[0.21-0.39] unit decrease	Illumina [6200000] (imputed)	N
1171	chr8	76860026	76860027	rs66576886	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	8q21.13	NR	rs66576886-A	0.3949	6E-10	(East Asian)	0.2481	[0.17-0.33] unit decrease	Illumina [6200000] (imputed)	N
1171	chr8	76862207	76862208	rs35918296	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	8q21.13	HNF4G	rs35918296-C	0.586164	1E-31		0.0166507	[0.014-0.019] unit increase	Affymetrix [12370749]	N
1171	chr8	76873698	76873699	rs1381660	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	8q21.13	HNF4G	rs1381660-A	0.5026	3E-7		0.0238	[0.015-0.033] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1171	chr8	76873698	76873699	rs1381660	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	8q21.13	HNF4G	rs1381660-A	0.5026	9E-6	(men)	0.0271	[0.015-0.039] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1171	chr8	76873698	76873699	rs1381660	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	8q21.13	HNF4G	rs1381660-A	0.5026	2E-9		0.0251	[0.017-0.033] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1171	chr8	76890781	76890782	rs4735655	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	8q21.13		rs4735655-C	NR	1E-8		0.0116	[0.0077-0.0155] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1171	chr8	76900328	76900329	rs12682248	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	8q21.13	NR	rs12682248-A	0.7442	2E-6	(EA)	0.0347	[0.02-0.049] unit increase	Illumina [~ 11800000] (imputed)	N
1171	chr8	76925889	76925890	rs830455	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	145,502 East Asian ancestry individuals	NA	8q21.13		rs830455-A	0.508701	1E-8		0.019861	[0.013-0.027] unit decrease	Illumina [13477767] (imputed)	N
1171	chr8	76928830	76928831	rs830450	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls, 20,367 East Asian ancestry cases, 158,359 East Asian ancestry controls	NA	8q21.13		rs830450-C	NR	7E-12		0.0464	[0.033-0.06] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1172	chr8	76982266	76982267	rs1459180	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index x sex x age interaction (4df test)	up to 51,625 European ancestry men aged <50, up to 60,654 European ancestry women aged <50, up to 90,988 European ancestry men aged >50, up to 106,622 European ancestry women aged >50	NA	8q21.13	LINC01111, HNF4G	rs1459180-G	0.58	1E-8				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1172	chr8	76982266	76982267	rs1459180	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index (age <50)	up to 51,625 European ancestry men, up to 60,654 European ancestry women	NA	8q21.13	LINC01111, HNF4G	rs1459180-G	0.58	3E-9		0.027	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1172	chr8	76982266	76982267	rs1459180	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	8q21.13	LINC01111, HNF4G	rs1459180-G	0.58	3E-8				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1172	chr8	77031592	77031593	rs62517932	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	8q21.13	LINC01111	rs62517932-A	0.0788	3E-9		0.041	[0.027-0.055] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1172	chr8	77035227	77035228	rs16939239	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Ischemic stroke (cardioembolic)	7,193 European ancestry cases, 406,111 European ancestry controls, 847 East Asian ancestry cases, 28,195 East Asian ancestry controls, 422 South Asian ancestry cases, 6,707 South Asian ancestry controls, 414 African American cases, 15,146 African American controls, 31 Asian ancestry cases, 333 Asian ancestry controls, 99 Latin American cases, 692 Latin American controls	NA	8q21.13	Chr8q21	rs16939239-A	0.12	4E-7		1.15	[1.09-1.22]	NR [~ 8000000] (imputed)	N
1172	chr8	77064035	77064036	rs147496940	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q21.13	NR	rs147496940-G	0.999618	6E-11				Affymetrix, Illumina [24588908] (imputed)	N
1173	chr8	77097514	77097515	rs3955298	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	8q21.13	intergenic	rs3955298-?	NR	5E-6		0.203	[0.099-0.307] unit decrease	Illumina [at least 13000000] (imputed)	N
1173	chr8	77104816	77104817	rs10113066	32989287	Cuellar-Partida G	2020-09-28	Nat Hum Behav	Genome-wide association study identifies 48 common genetic variants associated with handedness.	Ambidextrousness	47,637 European ancestry cases, 1,422,823 European ancestry controls	NA	8q21.13	RNU2-54P	rs10113066-T	0.5054	4E-9		1.0470196	[NR]	Illumina [12493443] (imputed)	N
1173	chr8	77131579	77131580	rs1431015	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	8q21.13	NR	rs1431015-?	NR	1E-7				Affymetrix [NR]	N
1174	chr8	77224419	77224420	rs200119412	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	8q21.13		rs200119412-C	0.56	1E-20				NR [NR] (imputed)	N
1174	chr8	77224419	77224420	rs200119412	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	8q21.13		rs200119412-C	0.56	3E-24		0.015	% increase	NR [NR] (imputed)	N
1174	chr8	77224419	77224420	rs200119412	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		8q21.13	ZFHX4	rs200119412-T	0.44279	5E-17		0.0116411	[0.0089-0.0144] unit decrease	Affymetrix [12370749]	N
1174	chr8	77238391	77238392	rs10102172	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	8q21.13	NR	rs10102172-?	NR	6E-28				Affymetrix [~ 8270000] (imputed)	N
1174	chr8	77238391	77238392	rs10102172	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	8q21.13		rs10102172-?	NR	2E-27				NR [~ 8900000] (imputed)	N
1174	chr8	77272103	77272104	rs10098092	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	8q21.13	NR	rs10098092-C	0.2964	1E-8				NR [9056863] (imputed)	N
1174	chr8	77295976	77295977	rs75226183	23696881	Wood AR	2013-05-16	PLoS One	Imputation of variants from the 1000 Genomes Project modestly improves known associations and can identify low-frequency variant-phenotype associations undetected by HapMap based imputation.	Carotenoid levels	up to 1,200 European ancestry individuals	NA	8q21.13	LOC100192378	rs75226183-?	NR	2E-9	(Beta Cryptoxanthin)			Illumina [up to 10879115] (imputed)	N
1174	chr8	77297116	77297117	rs12680480	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	8q21.13		rs12680480-A	0.28	6E-11		6.55	z score increase	Affymetrix [9061022] (imputed)	N
1174	chr8	77297116	77297117	rs12680480	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	8q21.13	NR	rs12680480-A	0.312	1E-11				NR [9056863] (imputed)	N
1174	chr8	77316119	77316120	rs7820612	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls	NA	8q21.13	RP11-706J10.1	rs7820612-A	0.304079	2E-8		0.050677635	[0.033-0.068] unit decrease	Affymetrix [7288503] (imputed)	N
1174	chr8	77320353	77320354	rs150293538	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	Low-grade serous ovarian cancer	1,012 European ancestry cases, 40,941 European ancestry controls	NA	8q21.13	NR	rs150293538-T	0.978	1E-6		3.0	[1.79409543681435-5.01001565578963]	Illumina [11595112] (imputed)	N
1174	chr8	77320353	77320354	rs150293538	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	Low-grade serous and serous borderline ovarian cancer	2,966 European ancestry cases, 40,941 European ancestry controls	NA	8q21.13	NR	rs150293538-T	0.9784417	2E-9		2.1880746	[1.65336168482279-2.89571888582476]	Illumina [11595112] (imputed)	N
1175	chr8	77335631	77335632	rs4357263	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	8q21.13	NR	rs4357263-?	NR	7E-16				Affymetrix [~ 8270000] (imputed)	N
1175	chr8	77346751	77346752	rs62515696	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	8q21.13		rs62515696-?	NR	1E-19				NR [~ 8900000] (imputed)	N
1175	chr8	77372987	77372988	rs56099375	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking cessation (MTAG)	up to 820,192 European ancestry individuals	NA	8q21.13	NR	rs56099375-T	0.24	2E-8		0.0103936	[0.0068-0.014] unit decrease	NR [9732723] (imputed)	N
1175	chr8	77372987	77372988	rs56099375	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	8q21.13	Intergenic	rs56099375-T	0.2451	7E-11	(MTAG)	0.0125	[0.0088-0.0162] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1175	chr8	77372987	77372988	rs56099375	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	8q21.13	Intergenic	rs56099375-C	0.7549	1E-8		0.015	[0.0099-0.0201] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1175	chr8	77372987	77372988	rs56099375	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	8q21.13		rs56099375-T	0.241	3E-13		0.012	[0.0087-0.0153] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1175	chr8	77372987	77372988	rs56099375	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	8q21.13	Intergenic	rs56099375-T	0.241	3E-16	(MTAG)	0.0126	[0.0097-0.0155] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1175	chr8	77412464	77412465	rs116251467	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Chronic sinus infection	5,291 European ancestry cases, 79,622 European ancestry controls	NA	8q21.13	NR	rs116251467-?	NR	5E-6		1.006	[0.61-1.4] unit decrease	Illumina [at least 560000] (imputed)	N
1176	chr8	77468677	77468678	rs17431641	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Non-melanoma skin cancer	5,912 European ancestry cases, 181,740 European ancestry controls		8q21.13	ZFHX4	rs17431641-T	NR	2E-16		1.45	[1.32-1.58]	Affymetrix [5734850] (imputed)	N
1176	chr8	77473174	77473175	rs12056645	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	8q21.13	NR	rs12056645-?	NR	4E-6	(AA)	5.18	[4.3-6.06]	Illumina [905956]	N
1176	chr8	77474544	77474545	rs10093547	27539887	Chahal HS	2016-08-19	Nat Commun	Genome-wide association study identifies 14 novel risk alleles associated with basal cell carcinoma.	Basal cell carcinoma	12.945 European ancestry cases, 274,252 European ancestry controls	4,242 European ancestry cases, 12,802 European ancestry controls	8q21.13	ZFHX4	rs10093547-G	0.94	5E-15		1.22	[NR]	Illumina [at least 560000] (imputed)	N
1176	chr8	77475129	77475130	rs10216564	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	8q21.13		rs10216564-?	NR	1E-21		0.793754	[0.75-0.84]	NR [685523]	N
1176	chr8	77475129	77475130	rs10216564	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Cancer	56,634 White British ancestry cases, 218,196 White British ancestry controls	NA	8q21.13		rs10216564-?	NR	1E-9		0.916364	[0.89-0.94]	NR [688737]	N
1176	chr8	77475129	77475130	rs10216564	33549134	Adolphe C	2021-02-06	Genome Med	Genetic and functional interaction network analysis reveals global enrichment of regulatory T cell genes influencing basal cell carcinoma susceptibility.	Basal cell carcinoma	17,416 European ancestry cases, 375,455 European ancestry controls	NA	8q21.13	LINC01111	rs10216564-C	0.0634699	7E-37		0.3207394	[0.27-0.37] unit decrease	Affymetrix [7260263] (imputed)	N
1176	chr8	77478538	77478539	rs28727938	25855136	Stacey SN	2015-04-09	Nat Commun	New basal cell carcinoma susceptibility loci.	Basal cell carcinoma	4,572 European ancestry cases, 266,358 European ancestry controls	up to 956 European ancestry cases, up to 4,214 European ancestry controls, 526 cases, 528 controls	8q21.13	ZFHX4, ZFHX4-AS1	rs28727938-C	0.938	4E-12		1.43	[1.30-1.59]	Illumina [24988228] (imputed)	N
1176	chr8	77483429	77483430	rs35251485	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Skin cancer	25,928 European ancestry cases, 466,275 European ancestry controls, 154 East Asian ancestry cases, 178,572 East Asian ancestry controls	NA	8q21.13		rs35251485-A	NR	8E-25		0.2072	[0.17-0.25] unit decrease	Affymetrix, Illumina [25845421] (imputed)	N
1176	chr8	77483429	77483430	rs35251485	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Keratinocyte cancer (MTAG)	at least 18,538 European ancestry cases, at least 340,302 European ancestry controls	NA	8q21.13	RP11-115I9.1	rs35251485-G	0.936817	4E-35		1.26	[1.22-1.31]	Affymetrix [7600000] (imputed)	N
1176	chr8	77483429	77483430	rs35251485	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Basal cell carcinoma	31,787 European ancestry cases, 619,351 European ancestry controls	NA	8q21.13	RP11-115I9.1	rs35251485-G	0.932938	2E-39		1.2820514	[1.22-1.35]	Affymetrix, Illumina [up to 9061544] (imputed)	N
1176	chr8	77483796	77483797	rs13267351	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	8q21.13	ZFHX4-AS1	rs13267351-C	0.836065	3E-11		0.0166415	[0.012-0.022] unit decrease	NR [13737936] (imputed)	N
1176	chr8	77493525	77493526	rs2581260	33888516	Zheng T	2021-04-22	Gut	Genome-wide analysis of 944 133 individuals provides insights into the etiology of haemorrhoidal disease.	Haemorrhoidal disease	218,920 European ancestry cases, 725,213 European ancestry controls	NA	8q21.13	intergenic	rs2581260-?	0.1641	1E-9		0.97	[0.96-0.98]	Affymetrix, Illumina [8494288] (imputed)	N
1176	chr8	77493525	77493526	rs2581260	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	8q21.13		rs2581260-?	NR	3E-21				NR [~ 8900000] (imputed)	N
1176	chr8	77493525	77493526	rs2581260	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	8q21.13		rs2581260-?	NR	3E-18		0.0249697	[0.019-0.031] unit decrease	Affymetrix [20259828] (imputed)	N
1176	chr8	77505307	77505308	rs10808812	28087736	Ludwig KU	2017-01-13	Hum Mol Genet	Imputation of orofacial clefting data identifies novel risk loci and sheds light on the genetic background of cleft lip ? cleft palate and cleft palate only.	Nonsyndromic cleft lip with or without cleft palate	399 European ancestry cases, 1,318 European ancestry controls, 666 European ancestry trios, 795 Asian trios	224 European ancestry cases, 921 European ancestry controls, 152 Mayan cases, 323 Mayan controls, 198 Middle Eastern cases, 391 Middle Eastern controls	8q21.13	NR	rs10808812-?		1E-6	(All)			NR [8012124] (imputed)	N
1176	chr8	77505317	77505318	rs116860797	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	8q21.13	NR	rs116860797-G	0.98	5E-6		1.01	[-1.048-3.068]	Affymetrix [at least 143006] (imputed)	N
1176	chr8	77507612	77507613	rs7846606	22863734	Ludwig KU	2012-08-05	Nat Genet	Genome-wide meta-analyses of nonsyndromic cleft lip with or without cleft palate identify six new risk loci.	Orofacial clefts	Up to 666 European ancestry trios, 399 European ancestry cases, 1,318 European ancestry controls	up to 795 East Asian ancestry trios	8q21.13	NR	rs7846606-?	NR	7E-6	(Meta-All, NSCL/P)			NR [497084]	N
1176	chr8	77516941	77516942	rs10808813	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		8q21.13	NR	rs10808813-G	NR	6E-9		0.0402379	NR unit increase	NR [NR] (imputed)	N
1176	chr8	77588715	77588716	rs7838781	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	8q21.13		rs7838781-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1176	chr8	77588715	77588716	rs7838781	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	8q21.13	ZFHX4, AS1	rs7838781-A		4E-6		0.227	unit increase	Affymetrix [at least 2696785] (imputed)	N
1176	chr8	77588715	77588716	rs7838781	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	8q21.13	ZFHX4, AS1	rs7838781-A		2E-8		0.183	unit increase	Affymetrix [at least 2696785] (imputed)	N
1176	chr8	77593245	77593246	rs4143530	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	8q21.13		rs4143530-?	NR	4E-11				NR [~ 8900000] (imputed)	N
1176	chr8	77593245	77593246	rs4143530	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	8q21.13	NR	rs4143530-C	0.134629	2E-15		0.0359851	[0.027-0.045] unit increase	NR [19129689] (imputed)	N
1177	chr8	77606608	77606609	rs1034484	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Non-melanoma skin cancer	5,912 European ancestry cases, 181,740 European ancestry controls		8q21.13	NR	rs1034484-A	NR	8E-7		1.28163	[1.16156-1.41412]	Affymetrix [5734850] (imputed)	N
1177	chr8	77611011	77611012	rs6995390	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	8q21.13	ZFHX4	rs6995390-T	0.16474100000000003	8E-13		0.029588	[0.021-0.038] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
1177	chr8	77611624	77611625	rs4735738	23667675	Tanikawa C	2013-05-07	PLoS One	Genome wide association study of age at menarche in the Japanese population.	Menarche (age at onset)	15,495 Japanese ancestry females	NA	8q21.13	ZFHX4	rs4735738-A	0.49918	5E-6		0.0728	[0.042-0.104] year increase	Illumina [2310762] (imputed)	N
1177	chr8	77653944	77653945	rs11786868	29773799	Horikoshi M	2018-05-17	Nat Commun	Elucidating the genetic architecture of reproductive ageing in the Japanese population.	Menopause (age at onset)	43,861 Japanese ancestry women	32,545 European ancestry women	8q21.13	NR	rs11786868-C	0.5126	3E-8	(Japanese)	0.049	[0.031-0.067] year increase	Illumina [at least 532488] (imputed)	N
1177	chr8	77658644	77658645	rs7837649	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Monobrow	69,284 European ancestry individuals	NA	8q21.13	ZFHX4	rs7837649-?	NR	6E-21		0.046	[0.056-0.036] unit decrease	Illumina [12039491] (imputed)	N
1177	chr8	77666731	77666732	rs111541746	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	8q21.13		rs111541746-A	NR	1E-13		0.0223	[0.016-0.028] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
1177	chr8	77675311	77675312	rs7821604	29773799	Horikoshi M	2018-05-17	Nat Commun	Elucidating the genetic architecture of reproductive ageing in the Japanese population.	Menarche (age at onset)	67,029 Japanese ancestry women	73,397 European ancestry women	8q21.13	ZFHX4	rs7821604-C	0.51	2E-8	(japanese)	0.05	[0.03-0.07] year increase	Illumina [at least 532488] (imputed)	N
1177	chr8	77695543	77695544	rs7007681	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	8q21.13		rs7007681-?	NR	2E-7				NR [~ 8900000] (imputed)	N
1178	chr8	77726986	77726987	rs17437952	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Non-melanoma skin cancer	5,912 European ancestry cases, 181,740 European ancestry controls		8q21.13	NR	rs17437952-A	NR	4E-6		1.26813	[1.14595-1.40333]	Affymetrix [5734850] (imputed)	N
1178	chr8	77761918	77761919	rs61729527	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	8q21.13	ZFHX4	rs61729527-T	0.0519	5E-16		0.0337	[0.026-0.042] unit decrease	Affymetrix [18391927] (imputed)	N
1178	chr8	77761918	77761919	rs61729527	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	244,730 European ancestry women	NA	8q21.13	ZFHX4	rs61729527-T	0.052	1E-8		0.03	[0.018-0.042] unit decrease	Affymetrix [18391927] (imputed)	N
1178	chr8	77761918	77761919	rs61729527	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	205,513 European ancestry men	NA	8q21.13	ZFHX4	rs61729527-T	0.052	8E-9		0.04	[0.028-0.052] unit decrease	Affymetrix [18391927] (imputed)	N
1178	chr8	77761918	77761919	rs61729527	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	8q21.13		rs61729527-?	NR	4E-15				NR [~ 8900000] (imputed)	N
1178	chr8	77795239	77795240	rs2128944	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	8q21.13		rs2128944-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1178	chr8	77812821	77812822	rs6472991	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 206)	19,670 European ancestry individuals	NA	8q21.13		rs6472991-?	NR	9E-9				NR [9705931] (imputed)	N
1178	chr8	77819185	77819186	rs555535764	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	8q21.13	NR	rs555535764-T	0.998628	8E-13		1.37233	[1-1.75] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1178	chr8	77823082	77823083	rs7821492	31170924	Kong S	2019-06-06	BMC Med Genet	Identification of female-specific genetic variants for metabolic syndrome and its component traits to improve the prediction of metabolic syndrome in females.	Fasting plasma glucose	4,659 Korean ancestry females	5,273 Korean ancestry females	8q21.13	ZFHX4, PEX2	rs7821492-C	0.021173333333333332	3E-7		8.0246	[4.96-11.09] unit increase	Affymetrix [NR] (imputed)	N
1178	chr8	77854355	77854356	rs7357461	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8q21.13	ZFHX4	rs7357461-?	NR	6E-6	(TAG 54:1)	0.17328335	[0.098-0.248] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1179	chr8	77860995	77860996	rs113304312	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atrial fibrillation/atrial flutter	29,212 European ancestry cases, 400,539 European ancestry controls, 4,150 East Asian ancestry cases, 155,540 East Asian ancestry controls	NA	8q21.13		rs113304312-G	NR	2E-8		0.1094	[0.071-0.148] unit decrease	Affymetrix, Illumina [25830072] (imputed)	N
1179	chr8	77871843	77871844	rs7008266	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8q21.13	ZFHX4	rs7008266-?	NR	5E-6	(TAG 56:2)	0.17393157	[0.099-0.249] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1179	chr8	77879486	77879487	rs71529289	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	8q21.13	NR	rs71529289-C	0.747992	2E-13		0.017019	[0.013-0.021] unit increase	Affymetrix [16583148] (imputed)	N
1179	chr8	77879486	77879487	rs71529289	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	8q21.13	NR	rs71529289-C	0.748102	2E-25		0.0359428	[0.029-0.043] unit increase	Affymetrix [16577424] (imputed)	N
1179	chr8	77879703	77879704	rs35222808	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	8q21.13	NR	rs35222808-C	0.747852	6E-10		0.00907747	[0.0062-0.012] unit increase	Affymetrix [16578495] (imputed)	N
1179	chr8	77884458	77884459	rs55867305	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	8q21.13	NR	rs55867305-G	0.748668	2E-21		0.0326321	[0.026-0.039] unit increase	Affymetrix [16577313] (imputed)	N
1179	chr8	77895666	77895667	rs142645936	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8q21.13	NR	rs142645936-G	0.01394	2E-8	(CTSD)	2.335	NR unit increase	Illumina [1671387] (imputed)	N
1180	chr8	78022509	78022510	rs6473008	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (age at voice breaking MTAG)	205,354 European ancestry individuals	NA	8q21.13		rs6473008-C	NR	1E-8		0.01843906	[0.012-0.025] years increase	NR [7400000] (imputed)	N
1180	chr8	78033797	78033798	rs148135807	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	8q21.13	NR	rs148135807-?	NR	8E-6		4.461	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1180	chr8	78092848	78092849	rs11995374	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	8q21.13	AC105242.1	rs11995374-C	NR	3E-9		0.0192066	[0.013-0.026] unit decrease	Affymetrix [321016] (imputed)	N
1180	chr8	78093836	78093837	rs7821178	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	8q21.13	PEX2	rs7821178-C	0.65	7E-17		0.04	[0.03-0.05] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
1180	chr8	78093836	78093837	rs7821178	21102462	Elks CE	2010-11-21	Nat Genet	Thirty new loci for age at menarche identified by a meta-analysis of genome-wide association studies.	Menarche (age at onset)	86,142 European ancestry female individuals, 557 Old Order Amish (founder/genetic isolate) female individuals, 1,103 Erasmus Rucphen (founder/genetic isolate) female individuals	Up to 12,813 European ancestry female individuals, 910 Val Borbera (founder/genetic isolate) female individuals, 348 Orcadian (founder/genetic isolate) female individuals, 338 Friuli Venezia Giulia (founder/genetic isolate) female individuals, 322 Carlantino (founder/genetic/isolate) female individuals	8q21.13	PXMP3	rs7821178-A	0.34	3E-9		2.4	[1.62-3.18] week decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1180	chr8	78096838	78096839	rs117688453	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8q21.13	NR	rs117688453-C	0.07317	2E-8	(ACOX1)	0.1394	NR unit increase	Illumina [1671387] (imputed)	N
1180	chr8	78097160	78097161	rs4735761	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	8q21.13	intergenic	rs4735761-A	0.7143	4E-56		0.0331	[0.029-0.037] unit decrease	Affymetrix [18391927] (imputed)	N
1180	chr8	78097160	78097161	rs4735761	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	8q21.13	PEX2, LOC102724874	rs4735761-?	NR	3E-19		0.031723186	[0.025-0.039] unit increase	Illumina [27896057] (imputed)	N
1180	chr8	78097724	78097725	rs4735764	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	8q21.13	NR	rs4735764-T	0.292803	1E-13		0.053019	[0.038-0.068] unit increase	Affymetrix [17914406] (imputed)	N
1180	chr8	78103028	78103029	rs17379249	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	8q21.13		rs17379249-T	0.212294	3E-17		0.0210179	[0.016-0.026] unit increase	Illumina [13479295] (imputed)	N
1180	chr8	78103494	78103495	rs76406469	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	8q21.13	NR	rs76406469-?		3E-9				NR [7428630] (imputed)	N
1180	chr8	78104675	78104676	rs4735769	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	8q21.13	NR	rs4735769-?	NR	6E-9				Affymetrix [~ 8270000] (imputed)	N
1180	chr8	78104675	78104676	rs4735769	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	8q21.13		rs4735769-?	NR	1E-93				NR [~ 8900000] (imputed)	N
1180	chr8	78107139	78107140	rs7842996	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	8q21.13	NR	rs7842996-A	0.286984	3E-10		0.0684085	[0.047-0.09] unit increase	Affymetrix [21375087] (imputed)	N
1180	chr8	78107139	78107140	rs7842996	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	8q21.13	AC105242.1	rs7842996-A	0.2838	3E-13		0.0514	[0.038-0.065] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1180	chr8	78115862	78115863	rs112912226	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	8q21.13		rs112912226-?	NR	3E-11				NR [9705931] (imputed)	N
1180	chr8	78116066	78116067	rs10094574	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Menarche (age at onset)	76,831 European ancestry individuals	NA	8q21.13	PEX2	rs10094574-?	NR	3E-8		0.027	[0.018-0.037] unit increase	Illumina [12039492]	N
1181	chr8	78127221	78127222	rs142139075	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	8q21.13		rs142139075-A	NR	2E-72		0.0275	[0.025-0.03] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1181	chr8	78138333	78138334	rs1452822	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	8q21.13	NR	rs1452822-?	NR	6E-24		0.24608	[0.2-0.29] unit increase	Affymetrix [7794483] (imputed)	N
1181	chr8	78138333	78138334	rs1452822	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	8q21.13	NR	rs1452822-?	NR	4E-18	(male)	0.33502	[0.26-0.41] unit increase	Affymetrix [7794483] (imputed)	N
1181	chr8	78138333	78138334	rs1452822	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	8q21.13	NR	rs1452822-?	NR	2E-7	(female)	0.13919	[0.087-0.191] unit increase	Affymetrix [7794483] (imputed)	N
1181	chr8	78144143	78144144	rs12680810	28440896	Yin X	2017-04-25	Am J Med Genet B Neuropsychiatr Genet	Genome-wide meta-analysis identifies a novel susceptibility signal at CACNA2D3 for nicotine dependence.	Nicotine dependence	7,297 European ancestry cases, 5,577 European ancestry controls, 918 European ancestry whole genome sequenced cases, 921 European ancestry whole genome sequenced controls, African American cases, 1,500 African American controls	NA	8q21.13	PEX2	rs12680810-A		1E-6		0.03	[0.01-0.05] unit increase	Illumina [at least 3251541] (imputed)	N
1181	chr8	78148190	78148191	rs4735677	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	8q21.13	NR	rs4735677-?	NR	4E-7		0.0383531	[0.024-0.053] unit increase	Illumina [34656550] (imputed)	N
1181	chr8	78148190	78148191	rs4735677	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	8q21.13	PXMP3	rs4735677-A	0.716	6E-30		0.037	[0.031-0.043] unit decrease	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
1181	chr8	78160048	78160049	rs7828279	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	8q21.13	NR	rs7828279-?	NR	6E-10	(cerebellar vermal lobules VIII X)			NR [9227495] (imputed)	N
1181	chr8	78160178	78160179	rs7846385	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	8q21.13	NR	rs7846385-?	NR	2E-6		0.03402108	[0.02-0.048] unit increase	Illumina [34656550] (imputed)	N
1181	chr8	78160178	78160179	rs7846385	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	8q21.13		rs7846385-?	NR	5E-19				NR [~ 8900000] (imputed)	N
1181	chr8	78160178	78160179	rs7846385	18391951	Gudbjartsson DF	2008-04-06	Nat Genet	Many sequence variants affecting diversity of adult human height.	Height	30,968 European ancestry individuals	8,541 European ancestry individuals	8q21.13	ZFHX4, PXMP3	rs7846385-C	0.27	5E-8		5.0	[3.24-6.76] % s.d. increase	Affymetrix, Illumina [up to 304226]	N
1181	chr8	78162063	78162064	rs4376477	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	8q21.13		rs4376477-T	0.21	2E-17		8.5	z score increase	Affymetrix [9061022] (imputed)	N
1181	chr8	78162063	78162064	rs4376477	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	8q21.13	NR	rs4376477-T	0.2054	1E-17				NR [9056863] (imputed)	N
1181	chr8	78173750	78173751	rs7835578	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	8q21.13		rs7835578-A	0.21	1E-24		10.25	z score increase	Affymetrix [9061022] (imputed)	N
1181	chr8	78177581	78177582	rs6998858	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	8q21.13	NR	rs6998858-C	0.2042	1E-12				NR [9056863] (imputed)	N
1181	chr8	78178147	78178148	rs6999980	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	8q21.13		rs6999980-G	0.21	6E-16		8.09	z score increase	Affymetrix [9061022] (imputed)	N
1181	chr8	78178484	78178485	rs6473015	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	8q21.13	NR	rs6473015-?	NR	4E-6		0.03294306	[0.019-0.047] unit increase	Illumina [34656550] (imputed)	N
1181	chr8	78178484	78178485	rs6473015	25281659	van der Valk RJ	2014-10-03	Hum Mol Genet	A novel common variant in DCST2 is associated with length in early life and height in adulthood.	Infant length	28,238 European ancestry individuals	NA	8q21.13	PEX2	rs6473015-A	0.263	4E-6		0.045	[0.025-0.065] unit decrease	Affymetrix, Illumina [2193675] (imputed)	N
1181	chr8	78178484	78178485	rs6473015	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	8q21.13	PEX2	rs6473015-A	0.72	7E-13		0.029	[NR] unit decrease	Affymetrix, Illumina [2834208] (imputed)	N
1181	chr8	78202837	78202838	rs4490807	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	8q21.13	NR	rs4490807-A	0.722279	5E-10		0.0450613	[0.03-0.06] unit decrease	Affymetrix [17914406] (imputed)	N
1181	chr8	78215351	78215352	rs7829639	32060260	Campos AI	2020-02-14	Nat Commun	Insights into the aetiology of snoring from observational and genetic investigations in the UK Biobank.	Snoring	61,792 British ancestry female cases, 156,554 British ancestry female controls	NA	8q21.13	NR	rs7829639-A	NR	1E-6		0.00739	[0.0045-0.0103] unit decrease	NR [11010159] (imputed)	N
1181	chr8	78215351	78215352	rs7829639	32060260	Campos AI	2020-02-14	Nat Commun	Insights into the aetiology of snoring from observational and genetic investigations in the UK Biobank.	Snoring	152,302 British ancestry cases, 256,015 British ancestry controls	NA	8q21.13	NR	rs7829639-A	NR	1E-10		0.00741278	[0.0051-0.0097] unit decrease	NR [11010159] (imputed)	N
1181	chr8	78215351	78215352	rs7829639	32060260	Campos AI	2020-02-14	Nat Commun	Insights into the aetiology of snoring from observational and genetic investigations in the UK Biobank.	Snoring	151,836 British ancestry cases, 255,230 British ancestry controls	NA	8q21.13	NR	rs7829639-A	NR	2E-10	(adjusted for BMI)	0.00717	[0.0049-0.0094] unit decrease	NR [11010159] (imputed)	N
1181	chr8	78232473	78232474	rs12550476	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	8q21.13	AC105242.1	rs12550476-T	NR	6E-10		0.0183825	[0.013-0.024] unit increase	Affymetrix [321788] (imputed)	N
1181	chr8	78234142	78234143	rs4523230	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Snoring	359,916 European ancestry individuals	NA	8q21.13	NR	rs4523230-T	0.7168	2E-9		1.0309278	[1.02-1.04]	Affymetrix, Illumina [10862568] (imputed)	N
1182	chr8	78255265	78255266	rs35663153	33768542	Liu Y	2021-03-26	Clin Pharmacol Ther	Class II HLA Variants Associate with Risk of Pegaspargase Hypersensitivity.	Asparaginase hypersensitivity in acute lymphoblastic leukemia	310 African ancestry individuals	NA	8q21.13	NR	rs35663153-G	NR	3E-6		6.51	[NR]	Illumina [NR] (imputed)	N
1182	chr8	78277472	78277473	rs4637816	26545630	Deming Y	2015-09-25	Neurobiol Aging	A potential endophenotype for Alzheimer's disease: cerebrospinal fluid clusterin.	Plasma clusterin levels	521 Alzheimer's disease cases, 297 controls	NA	8q21.13	LOC102724874	rs4637816-?		9E-6				Illumina [5970354] (imputed)	N
1182	chr8	78325884	78325885	rs13259667	23942779	McGue M	2013-08-14	Behav Genet	A genome-wide association study of behavioral disinhibition.	Behavioural disinhibition (generation interaction)	3,852 European ancestry parents, 3,336 European ancestry offspring	NA	8q21.13	NR	rs13259667-A	0.074	8E-6	(Alcohol dependence)			Illumina [527829]	N
1182	chr8	78363127	78363128	rs75653581	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	334,468 European ancestry, NR ancestry individuals	NA	8q21.13		rs75653581-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1182	chr8	78365901	78365902	rs1515074	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	8q21.13	RP11-38H17.1	rs1515074-A	NR	4E-8		0.0162332	[0.01-0.022] unit decrease	Affymetrix [321788] (imputed)	N
1182	chr8	78369743	78369744	rs72665687	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8q21.13	NR	rs72665687-C	0.03484	3E-9	(ACOX1)	0.2041	NR unit increase	Illumina [1671387] (imputed)	N
1183	chr8	78383810	78383811	rs264794	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	8q21.13	RP11-38H17.1	rs264794-C	NR	1E-11		0.019899	[0.014-0.026] unit increase	Affymetrix [321788] (imputed)	N
1183	chr8	78400844	78400845	rs78027453	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	8q21.13		rs78027453-?	NR	1E-9				Affymetrix [NR] (imputed)	N
1183	chr8	78503528	78503529	rs416406	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Prostate cancer	7,438 White British ancestry cases, 118,206 White British ancestry controls	NA	8q21.13		rs416406-?	NR	2E-6		1.08963	[1.05-1.12]	NR [680312]	N
1184	chr8	78530714	78530715	rs906998	35215271	Almandil NB	2022-01-27	Pharmaceuticals (Basel)	Integration of Transcriptome and Exome Genotyping Identifies Significant Variants with Autism Spectrum Disorder.	Autism spectrum disorder	70 Arab ancestry cases, 132 Arab ancestry controls	NA	8q21.13	NA	rs906998-T	0.5795	9E-6		0.3463	[0.2155-0.5562]	Illumina [243345]	N
1184	chr8	78531370	78531371	rs13251900	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	8q21.13	RP11-38H17.1	rs13251900-G	NR	4E-10		0.0175885	[0.012-0.023] unit decrease	Affymetrix [321016] (imputed)	N
1184	chr8	78534561	78534562	rs13253998	27802415	Salvi E	2016-10-31	Hypertension	Genome-Wide and Gene-Based Meta-Analyses Identify Novel Loci Influencing Blood Pressure Response to Hydrochlorothiazide.	Systolic blood pressure response to hydrochlorothiazide in hypertension	1,739 European ancestry individuals	430 African American individuals	8q21.13	PEX2, PKIA	rs13253998-T	0.51	7E-6	(EA)	0.9	[NR] mmHg decrease	Affymetrix, Illumina [up to 2500000] (imputed)	N
1184	chr8	78558036	78558037	rs7018094	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	8q21.13	RP11-38H17.1	rs7018094-C	NR	4E-10		0.0185002	[0.013-0.024] unit decrease	Affymetrix [321788] (imputed)	N
1184	chr8	78588653	78588654	rs1588405	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 60)	3,566 European ancestry individuals	4,680 European ancestry individuals	8q21.13		rs1588405-C	0.436164149	1E-8				Illumina [7417619] (imputed)	N
1184	chr8	78602150	78602151	rs55867249	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	8q21.13	NR	rs55867249-T	0.142462	4E-8		0.0522144	[0.033-0.071] unit increase	Affymetrix [17914406] (imputed)	N
1184	chr8	78630366	78630367	rs7016717	28222112	Dumitrescu L	2017-01-01	PLoS One	Genome-wide study of resistant hypertension identified from electronic health records.	Resistance to antihypertensive treatment in hypertension	1,719 European ancestry resistant cases, 708 European ancestry controlled hypertensives, 1,111 African American, Hispanic and other ancestry resistant cases, 168 African American, Hispanic and other ancestry controlled hypertensives	NA	8q21.13	intergenic	rs7016717-G	0.89	7E-6		1.77	1.38-2.27	Affymetrix, Illumina [2530150] (imputed)	N
1184	chr8	78639612	78639613	rs34746747	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	8q21.13		rs34746747-?	NR	1E-11				NR [~ 8900000] (imputed)	N
1185	chr8	78647694	78647695	rs62507765	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	8q21.13		rs62507765-?	NR	2E-9				Affymetrix [NR] (imputed)	N
1185	chr8	78649179	78649180	rs62507766	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	8q21.13		rs62507766-?	NR	3E-9				Affymetrix [NR] (imputed)	N
1185	chr8	78680348	78680349	rs3864663	21658281	Aouizerat BE	2011-06-10	BMC Cardiovasc Disord	GWAS for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease.	Sudden cardiac arrest	88 European ancestry cases, 517 European ancestry controls	NA	8q21.13	PXMP3	rs3864663-?	0.15	2E-6	(Recessive)	1.4	[1.22-1.61]	Affymetrix [319222]	N
1185	chr8	78689722	78689723	rs573119789	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia	11,197 European ancestry low myopic cases, 21,416 European ancestry emmetropia controls	NA	8q21.13	NR	rs573119789-?	NR	2E-6		0.792141	[0.46-1.12] unit increase	NR [13958389] (imputed)	N
1185	chr8	78716820	78716821	rs558258836	30677029	Riveros-McKay F	2019-01-24	PLoS Genet	Genetic architecture of human thinness compared to severe obesity.	Normal body mass index vs. thin	1,471 European ancestry thin adults, 6,460 European ancestry control adults	3,532 British ancestry thin individuals, up to 20,720 British ancestry controls	8q21.13	LOC102724874	rs558258836-T	NR	6E-6		2.71	[1.76-4.18]	Illumina [41266535] (imputed)	N
1185	chr8	78748315	78748316	rs6473063	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric bone mineral density (femoral neck)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	8q21.13	NR	rs6473063-T	0.047	8E-6		0.405766	[0.23-0.58] unit increase	Illumina [~ 6600000] (imputed)	N
1186	chr8	78785991	78785992	rs4739179	27936112	Kalsi G	2016-12-09	PLoS One	Genome-Wide Association of Heroin Dependence in Han Chinese.	Heroin dependence	370 Han Chinese ancestry cases, 134 Han Chinese ancestry controls		8q21.13	NR	rs4739179-?	0.6523	4E-6		1.98		Illumina [4009606] (imputed)	N
1186	chr8	78818555	78818556	rs17479559	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8q21.13	C8orf70	rs17479559-?	NR	6E-6	(propionic acid)	1.1758996	[0.67-1.68] unit increase	Affymetrix [at least 2500000] (imputed)	N
1186	chr8	78840488	78840489	rs4739182	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	8q21.13	LOC102724874, PKIA	rs4739182-T	0.2321	6E-12		0.116	[0.083-0.149] unit decrease	Affymetrix [~ 11900000] (imputed)	N
1186	chr8	78869759	78869760	rs7010571	31830031	Chernus JM	2019-12-12	PLoS Genet	A candidate gene analysis and GWAS for genes associated with maternal nondisjunction of chromosome 21.	Maternal nondisjunction of chromosome 21 (mothers vs fathers)	705 mothers, 645 fathers	NA	8q21.13	NR	rs7010571-?		8E-6		1.6393442	[NR]	Illumina [NR] (imputed)	N
1186	chr8	78887634	78887635	rs77985577	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q21.13	NR	rs77985577-A	0.232374	1E-10				Affymetrix, Illumina [24588908] (imputed)	N
1186	chr8	78887634	78887635	rs77985577	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	8q21.13	NR	rs77985577-A	0.202898	2E-11		0.086034	[0.061-0.111] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1187	chr8	78924202	78924203	rs13258410	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	8q21.13		rs13258410-C	0.366489	3E-9		0.0138983615	[0.0093-0.0185] unit decrease	Affymetrix [93095623] (imputed)	N
1187	chr8	78929180	78929181	rs573858836	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	8q21.13		rs573858836-G	0.0040583	3E-6		0.25198	[0.15-0.36] unit decrease	Affymetrix [15580782] (imputed)	N
1187	chr8	78930176	78930177	rs11779013	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	8q21.13	NR	rs11779013-C	0.366372	3E-11		0.015377581	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1187	chr8	78930578	78930579	rs4412362	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Intraocular pressure	133,492 European ancestry individuals	NA	8q21.13	PKIA	rs4412362-C	0.39	6E-9				Affymetrix, Illumina [8002429] (imputed)	N
1187	chr8	78941330	78941331	rs7004112	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	35,422 individuals (>=25 years old)	NA	8q21.13		rs7004112-T	NR	6E-9		0.0126	[0.0085-0.0167] mm decrease	Affymetrix, Illumina [8936601] (imputed)	N
1187	chr8	78941330	78941331	rs7004112	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	29,580 European ancestry individuals, 14,462 Asian ancestry individuals	88,218 European ancestry individuals	8q21.13		rs7004112-T	0.37	6E-38		0.014	mm decrease	Affymetrix, Illumina [8936601] (imputed)	N
1187	chr8	78941330	78941331	rs7004112	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	14,462 Asian ancestry individuals	NA	8q21.13		rs7004112-T	0.5	2E-8		0.017	mm decrease	Affymetrix, Illumina [7861976] (imputed)	N
1187	chr8	78941533	78941534	rs62508223	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	8q21.13	Intergenic	rs62508223-G	0.388	9E-11		0.084	[0.059-0.109] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1187	chr8	78948854	78948855	rs6999835	31809533	Han X	2019-09-06	Hum Mol Genet	Genome-wide association analysis of 95 549 individuals identifies novel loci and genes influencing optic disc morphology.	Optic disc size	67,040 British ancestry individuals	28,509 European ancestry individuals	8q21.13	PKIA	rs6999835-T	0.63	2E-10		0.01	unit increase	Affymetrix [8928767] (imputed)	N
1187	chr8	78951748	78951749	rs6995342	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	8q21.13	NA	rs6995342-?		4E-18				Affymetrix, Illumina [NR] (imputed)	N
1187	chr8	78956657	78956658	rs2219968	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	8q21.13	LOC102724874, PKIA	rs2219968-G	0.6279	9E-9		0.0842	[0.056-0.113] unit increase	Affymetrix [~ 11900000] (imputed)	N
1187	chr8	78977692	78977693	rs35174414	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Intraocular pressure	133,492 European ancestry individuals	NA	8q21.13	Intergenic	rs35174414-?	NR	2E-9		0.0787	[0.053-0.104] unit decrease	Affymetrix, Illumina [up to 40000000] (imputed)	N
1187	chr8	79005680	79005681	rs16939604	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	8q21.13		rs16939604-A	NR	1E-13		0.0249	[0.018-0.031] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
1187	chr8	79009062	79009063	rs56080040	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	8q21.13	NR	rs56080040-C	0.147146	5E-9		0.018481383	[0.012-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1187	chr8	79009062	79009063	rs56080040	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	8q21.13	NR	rs56080040-C	0.147156	1E-10		0.020438517	[0.014-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1187	chr8	79009062	79009063	rs56080040	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	8q21.13		rs56080040-C	0.14714	4E-11		0.020868752	[0.015-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1187	chr8	79009062	79009063	rs56080040	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	8q21.13		rs56080040-C	0.147153	6E-13		0.022727046	[0.017-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
1187	chr8	79009062	79009063	rs56080040	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	8q21.13		rs56080040-?	NR	6E-28				NR [~ 8900000] (imputed)	N
1187	chr8	79012342	79012343	rs62510269	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	8q21.13		rs62510269-G	NR	3E-21		0.0318	[0.025-0.038] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1187	chr8	79012342	79012343	rs62510269	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	8q21.13		rs62510269-G	NR	1E-9		0.0198	[0.013-0.026] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
1187	chr8	79012342	79012343	rs62510269	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q21.13	NR	rs62510269-G	0.111948	1E-41				Affymetrix, Illumina [24649327] (imputed)	N
1187	chr8	79012342	79012343	rs62510269	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	8q21.13	NR	rs62510269-G	0.14573	2E-43		0.036092	[0.031-0.041] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1187	chr8	79013332	79013333	rs16939607	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	8q21.13	NR	rs16939607-A	0.147022	4E-27		0.034055166	[0.028-0.04] unit decrease	Affymetrix [93095623] (imputed)	N
1187	chr8	79013332	79013333	rs16939607	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	8q21.13		rs16939607-A	0.147069	6E-16		0.025344605	[0.019-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
1187	chr8	79013332	79013333	rs16939607	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	8q21.13		rs16939607-A	0.147026	1E-13		0.024076983	[0.018-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
1187	chr8	79013332	79013333	rs16939607	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q21.13	NR	rs16939607-A	0.123048	4E-23				Affymetrix, Illumina [23114412] (imputed)	N
1187	chr8	79013332	79013333	rs16939607	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	8q21.13	NR	rs16939607-A	0.146029	2E-25		0.028446	[0.023-0.034] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
1187	chr8	79013332	79013333	rs16939607	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q21.13	NR	rs16939607-A	0.121181	7E-19				Affymetrix, Illumina [23467995] (imputed)	N
1187	chr8	79013332	79013333	rs16939607	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	8q21.13	NR	rs16939607-A	0.146042	2E-21		0.025208	[0.02-0.03] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1187	chr8	79013332	79013333	rs16939607	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	8q21.13	intergenic	rs16939607-A	0.1473	2E-10		0.03242291	[0.022-0.042] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1187	chr8	79014244	79014245	rs62510270	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	8q21.13		rs62510270-G	0.853	4E-12				Affymetrix [10369434] (imputed)	N
1187	chr8	79014244	79014245	rs62510270	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	8q21.13		rs62510270-T	0.147056	3E-19		0.028132875	[0.022-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
1187	chr8	79034458	79034459	rs13272568	22504420	Estrada K	2012-04-15	Nat Genet	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Femoral neck bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	8q21.13	PKIA	rs13272568-A	0.44	6E-7		0.03	[NR] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1188	chr8	79144276	79144277	rs17485419	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	8q21.13	intergenic	rs17485419-G	0.31	3E-9		0.02287537	[0.015-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1189	chr8	79178329	79178330	rs117941271	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	8q21.13		rs117941271-A	0.010496	7E-16		0.089486755	[0.068-0.111] unit decrease	Affymetrix [93095623] (imputed)	N
1189	chr8	79178329	79178330	rs117941271	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	8q21.13		rs117941271-A	0.0105	6E-24		0.111876234	[0.09-0.134] unit increase	Affymetrix [93095623] (imputed)	N
1189	chr8	79221823	79221824	rs117808965	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	8q21.13		rs117808965-A	0.0065754	8E-6		0.1885	[0.11-0.27] unit decrease	Affymetrix [15580782] (imputed)	N
1189	chr8	79251652	79251653	rs11781889	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8q21.13	C8orf70	rs11781889-?	NR	6E-6	(propionic acid)	1.0870446	[0.62-1.56] unit increase	Affymetrix [at least 2500000] (imputed)	N
1190	chr8	79401037	79401038	rs1520333	21833088	Sawcer S	2011-08-11	Nature	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	8q21.13	IL7, PKIA	rs1520333-G	NR	2E-7		1.1	[1.08-1.11]	Illumina [465434]	N
1190	chr8	79417221	79417222	rs28703878	35215271	Almandil NB	2022-01-27	Pharmaceuticals (Basel)	Integration of Transcriptome and Exome Genotyping Identifies Significant Variants with Autism Spectrum Disorder.	Autism spectrum disorder	70 Arab ancestry cases, 132 Arab ancestry controls	NA	8q21.13	NA	rs28703878-G	0.233	6E-7		3.396	[2.08-5.544]	Illumina [243345]	N
1190	chr8	79417221	79417222	rs28703878	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	8q21.13	LOC102724874	rs28703878-G	NR	5E-22		1.1079105	NR	Affymetrix, Illumina [8278136] (imputed)	N
1191	chr8	79527959	79527960	rs146514552	34469433	Ashvetiya T	2021-09-01	PLoS One	Identification of novel genetic susceptibility loci for thoracic and abdominal aortic aneurysms via genome-wide association study using the UK Biobank Cohort.	Abdominal aortic aneurysm	1,363 European, Indian, Caribbean, African ancestry cases, 27,260  European, Indian, Caribbean, African ancestry controls	NA	8q21.13		rs146514552-?	NR	2E-7		1.88148		NR [NR] (imputed)	N
1191	chr8	79554290	79554291	rs76424112	33483693	Clements CC	2021-01-22	Mol Psychiatry	Genome-wide association study of patients with a severe major depressive episode treated with electroconvulsive therapy.	Major depressive episode treated with electroconvulsive therapy	2,725 European ancestry cases, 3,290 European ancestry controls	NA	8q21.13	NR	rs76424112-?	NR	3E-6		0.5164	[0.24-0.79]	Illumina [NR] (imputed)	N
1191	chr8	79554290	79554291	rs76424112	33483693	Clements CC	2021-01-22	Mol Psychiatry	Genome-wide association study of patients with a severe major depressive episode treated with electroconvulsive therapy.	Major depressive disorder and major depressive episode treated with electroconvulsive therapy	1,796 European ancestry cases, 3,290 European ancestry controls	NA	8q21.13	NR	rs76424112-?	NR	2E-6		0.4797	[0.18-0.78]	Illumina [NR] (imputed)	N
1191	chr8	79556147	79556148	rs4739134	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	8q21.13	PKIA, ZC2HC1A	rs4739134-?	NR	3E-8		1.12	[1.07-1.17]	Illumina [at least 5000000] (imputed)	N
1191	chr8	79556890	79556891	rs1966115	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls	NA	8q21.13	PKIA, ZC2HC1A	rs1966115-?	NR	1E-7		1.14	[1.09-1.20]	Illumina [at least 5000000] (imputed)	N
1191	chr8	79558153	79558159	rs111250433	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	8q21.13	NR	rs111250433-A	0.752632	2E-10		0.01662619	[0.011-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1192	chr8	79561745	79561746	rs16905897	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	8q21.13	NR	rs16905897-?	NR	2E-14				Affymetrix [NR]	N
1192	chr8	79575803	79575804	rs1021156	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	8q21.13	ZC2HC1A	rs1021156-A	0.26	9E-17		1.11		Illumina [161311]	N
1192	chr8	79586189	79586190	rs578007936	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	8q21.13	ZC2HC1A	rs578007936-A	0.0039	3E-6		0.4348	[0.25-0.62] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1192	chr8	79599937	79599939	rs67618117	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	8q21.13	IL7, ZC2HC1A	rs67618117-T	0.803144	7E-12		0.01930358	[0.014-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1192	chr8	79623616	79623617	rs1483573	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	8q21.13		rs1483573-G	NR	7E-60		0.0448	[0.04-0.05] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
1192	chr8	79623616	79623617	rs1483573	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	8q21.13	IL7, ZC2HC1A	rs1483573-G	0.747683	5E-39		0.03339844	[0.028-0.038] unit increase	Affymetrix [93095623] (imputed)	N
1192	chr8	79638137	79638138	rs2953475	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	8q21.13		rs2953475-C	0.75	6E-30				Affymetrix [10369434] (imputed)	N
1192	chr8	79638137	79638138	rs2953475	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	8q21.13		rs2953475-C	0.75	1E-38				Affymetrix [10369434] (imputed)	N
1192	chr8	79647547	79647547	rs144374908	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	13,477 African American or Afro-Caribbean and African ancestry individuals	NA	8q21.13	NR	rs144374908-?	0.680972	2E-9		0.113508	[0.076-0.151] SD units decrease	Affymetrix, Illumina [36456147] (imputed)	N
1192	chr8	79651941	79651942	rs2919932	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q21.13	NR	rs2919932-A	0.23184	2E-115				Affymetrix, Illumina [23472807] (imputed)	N
1192	chr8	79656988	79656989	rs2717547	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	8q21.13	IL7	rs2717547-G	0.2505	1E-10		0.02673554	[0.019-0.035] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1192	chr8	79656988	79656989	rs2717547	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	8q21.13	IL7	rs2717547-G	0.2505	8E-19		0.03661902	[0.029-0.045] unit increase	Affymetrix [~ 2500000] (imputed)	N
1192	chr8	79657262	79657263	rs2919917	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	8q21.13	IL7	rs2919917-C	0.250345	4E-65		0.043748986	[0.039-0.049] unit increase	Affymetrix [93095623] (imputed)	N
1192	chr8	79657262	79657263	rs2919917	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	8q21.13	IL7	rs2919917-C	0.250351	1E-86		0.052850813	[0.048-0.058] unit increase	Affymetrix [93095623] (imputed)	N
1192	chr8	79657262	79657263	rs2919917	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	8q21.13	IL7	rs2919917-C	0.2502	7E-32		0.04909823	[0.041-0.057] unit increase	Affymetrix [~ 2500000] (imputed)	N
1192	chr8	79657665	79657666	rs1441850	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	8q21.13		rs1441850-T	0.751	1E-39				Affymetrix [10369434] (imputed)	N
1192	chr8	79657665	79657666	rs1441850	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	8q21.13		rs1441850-T	0.751	2E-32				Affymetrix [10369434] (imputed)	N
1192	chr8	79657665	79657666	rs1441850	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	8q21.13	NR	rs1441850-C	0.25197	1E-116		0.050185	[0.046-0.054] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1192	chr8	79689634	79689635	rs17505589	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	8q21.13		rs17505589-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1193	chr8	79717181	79717184	rs746465488	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	95,717 East Asian ancestry individuals	NA	8q21.13		rs746465488-C	0.011013	1E-10		0.147014	[0.1-0.19] unit increase	Illumina [13471431] (imputed)	N
1193	chr8	79717336	79717337	rs117554445	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	8q21.13	IL7	rs117554445-C	0.00975099999999996	2E-41		0.16895548	[0.14-0.19] unit increase	Affymetrix [93095623] (imputed)	N
1193	chr8	79728781	79728782	rs72666886	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	8q21.13	IL7	rs72666886-C	0.903125	5E-16	(IL7, 14049_17_3)	0.34029	[0.26-0.42] unit increase	Illumina [> 1000000] (imputed)	N
1193	chr8	79739108	79739109	rs72667500	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL7	5,358 Icelandic ancestry individuals	NA	8q21.13		rs72667500-G	0.0907	4E-25		0.33555	[0.27-0.4] unit decrease	Illumina [7506463] (imputed)	N
1193	chr8	79747723	79747724	rs12677936	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	8q21.13		rs12677936-A	0.912	3E-9				Affymetrix [10369434] (imputed)	N
1193	chr8	79747723	79747724	rs12677936	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	8q21.13		rs12677936-A	0.912	6E-11				Affymetrix [10369434] (imputed)	N
1193	chr8	79753009	79753010	rs4739140	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	8q21.13		rs4739140-C	0.39	1E-12				Affymetrix [10369434] (imputed)	N
1193	chr8	79753009	79753010	rs4739140	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	8q21.13	RP11-79H23.3	rs4739140-T	0.609844	4E-32		0.028415237	[0.024-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
1193	chr8	79753009	79753010	rs4739140	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	8q21.13	RP11-79H23.3	rs4739140-T	0.609843	2E-11		0.015338708	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1193	chr8	79753009	79753010	rs4739140	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q21.13	NR	rs4739140-T	0.651244	4E-10				Affymetrix, Illumina [19872809] (imputed)	N
1193	chr8	79753009	79753010	rs4739140	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	8q21.13	NR	rs4739140-T	0.611355	2E-12		0.014554	[0.011-0.019] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
1193	chr8	79753009	79753010	rs4739140	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	8q21.13		rs4739140-?	NR	4E-13				NR [~ 8900000] (imputed)	N
1193	chr8	79766498	79766499	rs11992182	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	8q21.13		rs11992182-A	0.272079	2E-12		0.018670296	[0.013-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1194	chr8	79846183	79846184	rs4739148	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	8q21.13		rs4739148-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1194	chr8	79918402	79918403	rs556611356	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q21.13	NR	rs556611356-C	0.999093	1E-14				Affymetrix, Illumina [24588908] (imputed)	N
1194	chr8	79939735	79939736	rs79327698	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid respiratory support vs population)	495 European ancestry cases, 680,440 European ancestry controls, 102 Hispanic or Latin American cases, 94,330 Hispanic or Latin American controls, 39 Black or African American cases, 22,410 Black or African American controls	NA	8q21.13		rs79327698-?	NR	8E-6		0.7875551	[0.44-1.13] unit decrease	Illumina [9842460] (imputed)	N
1195	chr8	79986681	79986682	rs193101985	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	8q21.13	NR	rs193101985-G	0.999284	7E-13		1.457181	[1.06-1.85] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1195	chr8	80002531	80002532	rs74940243	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Inferior temporal gyrus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	8q21.13	NR	rs74940243-?		6E-6				Illumina [4322238] (imputed)	N
1195	chr8	80047910	80047911	rs117293599	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	8q21.13	Intergenic	rs117293599-G	NR	9E-7		0.496931	[0.3-0.69] unit decrease	Illumina [13520550] (imputed)	N
1195	chr8	80054098	80054099	rs16906548	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	8q21.13	NR	rs16906548-?	NR	3E-8				Affymetrix [NR]	N
1196	chr8	80090058	80090059	rs76162880	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8q21.13	NR	rs76162880-A	0.04181	4E-9	(GSTK1)	0.1372	NR unit increase	Illumina [1671387] (imputed)	N
1196	chr8	80103431	80103432	rs10448044	25917933	Zai CC	2014-11-20	J Psychiatr Res	A genome-wide association study of suicide severity scores in bipolar disorder.	Suicide in bipolar disorder	959 European ancestry individuals	NA	8q21.13	IL7	rs10448044-C		3E-6	(suicide attempt)	4.685	z score increase	Affymetrix, Illumina [2659407] (imputed)	N
1196	chr8	80195616	80195617	rs182156855	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	8q21.13	Intergenic	rs182156855-T	NR	6E-6		0.527444	[0.3-0.76] unit decrease	Illumina [13520550] (imputed)	N
1197	chr8	80227447	80227448	rs1460163	19081515	Mead S	2008-12-11	Lancet Neurol	Genetic risk factors for variant Creutzfeldt-Jakob disease: a genome-wide association study.	Creutzfeldt-Jakob disease	117 European ancestry cases, 3,083 European ancestry controls	2 European ancestry vCJD cases, 506 Oceania ancestry sCJD cases, 28 Oceania ancestry iCJD cases, 151 Oceania ancestry Kuru cases, 125 Oceania ancestry Kuru resistant cases, 3,608 European ancestry controls, 562 Oceania ancestry controls	8q21.13	STMN2	rs1460163-A	NR	6E-8				Affymetrix [288908]	N
1197	chr8	80234569	80234570	rs1870571	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	8q21.13	ENSG00000253659	rs1870571-?	NR	5E-9		0.012430782	[0.0083-0.0166] unit increase	NR [7306098]	N
1198	chr8	80348876	80348877	rs143454975	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Eubacterium R coprostanoligenes abundance in stool	5,959 Finnish ancestry individuals	NA	8q21.13		rs143454975-G	0.0194794	4E-8		0.165624	[0.11-0.22] unit increase	Illumina [7980478] (imputed)	N
1198	chr8	80383501	80383502	rs3922636	29724592	Pottier C	2018-04-30	Lancet Neurol	Potential genetic modifiers of disease risk and age at onset in patients with frontotemporal lobar degeneration and GRN mutations: a genome-wide association study.	Frontotemporal dementia with GRN mutation (age at onset)	382 European ancestry individuals	67 European ancestry individuals	8q21.13	STMN2	rs3922636-A	0.37	4E-6		2.98	[1.71-4.25] unit increase	Illumina [7033776] (imputed)	N
1199	chr8	80556499	80556500	rs113889867	25897834	Biernacka JM	2015-04-21	Transl Psychiatry	The International SSRI Pharmacogenomics Consortium (ISPC): a genome-wide association study of antidepressant treatment response.	Response to serotonin reuptake inhibitors in major depressive disorder	298 European ancestry cases, 567 Asian ancestry cases, 1529 European and other ancestry cases	NA	8q21.13	STMN2	rs113889867-?	NR	9E-7	(Response)	1.96	[NR]	Illumina [~ 7000000] (imputed)	N
1199	chr8	80590136	80590137	rs2461035	32958699	Innocenti F	2020-09-21	Clin Cancer Res	Genomic analysis of germline variation associated with survival of colorectal cancer patients treated with chemotherapy plus biologics in CALGB/SWOG 80405 (Alliance).	Metastatic colorectal cancer survival in treatment with chemotherapy plus biologics	613 European ancestry individuals	NA	8q21.13	STMN2, HEY1	rs2461035-?		5E-6		0.72	[0.62-0.83]	Illumina [540021]	N
1200	chr8	80674164	80674165	rs6473177	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8q21.13	STMN2	rs6473177-?	NR	8E-6	(allantoin)	0.3819534	[0.21-0.55] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1200	chr8	80683921	80683922	rs2920950	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8q21.13	STMN2	rs2920950-?	NR	9E-7	(fum; mal; alpha keto)	0.2504481	[0.15-0.35] unit increase	Affymetrix [at least 2500000] (imputed)	N
1200	chr8	80691468	80691469	rs6999859	27515689	Kerns SL	2016-07-20	EBioMedicine	Meta-analysis of Genome Wide Association Studies Identifies Genetic Markers of Late Toxicity Following Radiotherapy for Prostate Cancer.	Response to radiotherapy in prostate cancer (toxicity, rectal bleeding)	1,487 European ancestry individuals	NA	8q21.13	intergenic	rs6999859-G	0.28	3E-6		1.73	[1.37-2.17]	NR [~ 38000000] (imputed)	N
1201	chr8	80770151	80770152	rs143958409	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Spinal canal stenosis	9,660 European ancestry cases, 445,127 European ancestry controls, 661 East Asian ancestry cases, 178,065 East Asian ancestry controls	NA	8q21.13		rs143958409-T	NR	3E-8		0.4389	[0.28-0.59] unit increase	Affymetrix, Illumina [25840105] (imputed)	N
1201	chr8	80783997	80783998	rs17456596	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	8q21.13		rs17456596-G	0.43	3E-8		5.54	z score increase	Affymetrix [9061022] (imputed)	N
1201	chr8	80808360	80808361	rs117996110	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Chronic sinus infection	5,291 European ancestry cases, 79,622 European ancestry controls	NA	8q21.13	NR	rs117996110-?	NR	9E-6		0.444	[0.26-0.63] unit increase	Illumina [at least 560000] (imputed)	N
1201	chr8	80822460	80822461	rs4739697	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	8q21.13	MRPS28	rs4739697-A	0.338959	3E-20		0.0181623	[0.014-0.022] unit increase	NR [13737936] (imputed)	N
1201	chr8	80822460	80822461	rs4739697	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	8q21.13		rs4739697-?	NR	2E-24				NR [~ 8900000] (imputed)	N
1201	chr8	80822460	80822461	rs4739697	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	8q21.13		rs4739697-?	NR	2E-24		0.0218287	[0.017-0.026] unit increase	Affymetrix [20259828] (imputed)	N
1201	chr8	80831712	80831713	rs1274931	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	8q21.13	NR	rs1274931-?	NR	8E-9		5.772	NR z score decrease	Illumina [at least 830937] (imputed)	N
1202	chr8	80903606	80903607	rs1562986	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q21.13	MRPS28, TPD52	rs1562986-G	0.316198	2E-9	(-20 ms)	0.037156	[0.025-0.049] unit increase	Affymetrix [10000000] (imputed)	N
1202	chr8	80985034	80985035	rs181166265	23319000	Luykx JJ	2013-01-15	Mol Psychiatry	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA/MHPG ratio)	up to 398 European ancestry individuals	NA	8q21.13	TPD52	rs181166265-C		3E-6		0.2952	unit increase	Illumina [5767231] (imputed)	N
1202	chr8	80994293	80994294	rs111487401	33772158	Hoggart C	2021-03-26	Eur J Hum Genet	Identification of novel locus associated with coronary artery aneurysms and validation of loci for susceptibility to Kawasaki disease.	Kawasaki disease	400 European ancestry cases, 6,101 European ancestry controls	346 European ancestry cases, 1,609 European ancestry controls	8q21.13	TPD52	rs111487401-T	0.019	8E-8	(EA)	2.4	[1.7-3.3]	Illumina [5784964] (imputed)	N
1203	chr8	81031821	81031822	rs10957961	23934736	Yu B	2013-08-11	Genet Epidemiol	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels (Pyroglutamine)	1,260 African American individuals	NA	8q21.13	TPD52	rs10957961-A		2E-7		0.153	[0.10-0.23] unit increase	Affymetrix [~ 2500000] (imputed)	N
1203	chr8	81058818	81058819	rs7828135	25987243	Parham LR	2015-05-19	Pharmacogenomics J	Comprehensive genome-wide evaluation of lapatinib-induced liver injury yields a single genetic signal centered on known risk allele HLA-DRB1*07:01.	Lapatinib-induced hepatotoxicity	775 European ancestry treated breast cancer cases, 236 East Asian ancestry treated breast cancer cases, 247 treated breast cancer cases	NA	8q21.13	TPD52	rs7828135-?	NR	5E-8	(Maximum ALT, Conditioned on HLA- DRB1*07:01)			Illumina [1085881]	N
1203	chr8	81061041	81061042	rs4237108	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	8q21.13		rs4237108-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1203	chr8	81070611	81070612	rs117995488	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	8q21.13	NR	rs117995488-C	NR	1E-15		0.0496	[0.037-0.062] unit decrease	Affymetrix [9000000] (imputed)	N
1203	chr8	81076873	81076874	rs12541643	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	200,622 European ancestry individuals	NA	8q21.13	TPD52	rs12541643-T	0.4763	5E-9		0.0118	[0.0081-0.0155] unit increase	Affymetrix, Illumina [34064007] (imputed)	N
1203	chr8	81095394	81095395	rs998731	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	8q21.13	TPD52	rs998731-T	NR	6E-7		0.0622746	[-0.00446-0.12901] unit increase	Illumina [8380626] (imputed)	N
1203	chr8	81095394	81095395	rs998731	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	8q21.13	TPD52	rs998731-T	0.46	1E-7	(EA)	0.08333	[0.052-0.114] unit increase	Illumina [8380626] (imputed)	N
1203	chr8	81095394	81095395	rs998731	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	8q21.13	TPD52	rs998731-T	0.56	2E-8		1.08	[1.05-1.11]	Affymetrix, Illumina [up to 9739303] (imputed)	N
1203	chr8	81095394	81095395	rs998731	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	8q21.13	TPD52	rs998731-T	0.44	7E-9	(EA)	1.09	[1.06-1.12]	Affymetrix, Illumina [up to 9739303] (imputed)	N
1204	chr8	81228825	81228826	rs11987678	23728906	Byrne EM	2013-05-31	Am J Med Genet B Neuropsychiatr Genet	A genome-wide association study of sleep habits and insomnia.	Sleep duration	2,278 European ancestry individuals	NA	8q21.13	RP11-941H19.3	rs11987678-C	0.05	4E-6		0.32	[0.18-0.46] unit decrease	Illumina [2380486] (imputed)	N
1204	chr8	81249783	81249784	rs1553668	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	8q21.13	NR	rs1553668-T	0.633804	7E-9		0.00780902	[0.0052-0.0104] unit increase	Affymetrix [16578495] (imputed)	N
1204	chr8	81262895	81262896	rs7824993	30013184	Waage J	2018-07-16	Nat Genet	Genome-wide association and HLA fine-mapping studies identify risk loci and genetic pathways underlying allergic rhinitis.	Allergic rhinitis	59,762 European and unknown ancestry cases, 152,358 European and unknown ancestry controls	60,720 European ancestry cases, 618,527 European ancestry controls	8q21.13	ZBTB10, TPD52	rs7824993-A	0.3718	2E-10		1.05	[1.04-1.07]	Affymetrix, Illumina, Perlegen [16531985] (imputed)	N
1205	chr8	81266937	81266937	rs71266076	30552067	Shrine N	2018-12-11	Lancet Respir Med	Moderate-to-severe asthma in individuals of European ancestry: a genome-wide association study.	Asthma (moderate or severe)	5,135 European ancestry cases, 25,675 European ancestry controls	5,414 European ancestry cases, 21,471 European ancestry controls	8q21.13	MIR5708	rs71266076-C	0.3693	7E-13		1.1235955	[1.09-1.16]	Affymetrix [33771858] (imputed)	N
1205	chr8	81267235	81267236	rs13274067	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	8q21.13		rs13274067-?	NR	3E-13				NR [~ 8900000] (imputed)	N
1205	chr8	81268025	81268026	rs55839241	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	8q21.13	RP11-775E10.1	rs55839241-T	0.649196	4E-10		0.01453125	[0.01-0.0191] unit decrease	Affymetrix [93095623] (imputed)	N
1205	chr8	81268154	81268155	rs6473223	23817569	Hinds DA	2013-06-30	Nat Genet	A genome-wide association meta-analysis of self-reported allergy identifies shared and allergy-specific susceptibility loci.	Self-reported allergy	53,862 European ancestry individuals	NA	8q21.13	ZBTB10, TPD52	rs6473223-T	0.3599	8E-8		0.0668	[0.042-0.091] unit increase	Illumina [2400000] (imputed)	N
1205	chr8	81273209	81273210	rs11994858	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	8q21.13	NR	rs11994858-G	0.65405	4E-23		0.0114904	[0.0091-0.0139] unit increase	Affymetrix [16582621] (imputed)	N
1205	chr8	81273209	81273210	rs11994858	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	8q21.13	NR	rs11994858-G	0.65405	1E-19		0.0114328	[0.0089-0.014] unit increase	Affymetrix [16582614] (imputed)	N
1205	chr8	81275834	81275835	rs11786685	34454985	Sliz E	2021-08-26	J Allergy Clin Immunol	Uniting biobank resources reveals novel genetic pathways modulating susceptibility for atopic dermatitis.	Atopic dermatitis	22,474 European ancestry cases, 774,187 European ancestry controls	NA	8q21.13	NR	rs11786685-a	0.3393	2E-11		1.07	[1.05-1.10]	Affymetrix, Illumina [16201029] (imputed)	N
1205	chr8	81275834	81275835	rs11786685	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	8q21.13	ENSG00000253237	rs11786685-?	NR	3E-8		0.0116070295	[0.0075-0.0157] unit decrease	NR [7306098]	N
1205	chr8	81277368	81277369	rs4739736	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	8q21.13	NR	rs4739736-A	0.3478	1E-10		1.041	[1.028-1.053]	Affymetrix [15688218] (imputed)	N
1205	chr8	81278884	81278885	rs12543811	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls, 2,149 African ancestry cases, 6,055 African ancestry controls, 1,239 Japanese ancestry cases, 3,976 Japanese ancestry controls, 606 Latino cases, 792 Latino controls	NA	8q21.13	TPD52, ZBTB10	rs12543811-G	0.33999999999999997	1E-10		1.0869565	[1.05-1.11]	Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
1205	chr8	81285138	81285139	rs10957978	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atopic dermatitis	6,224 European ancestry cases, 475,075 European ancestry controls, 4,296 East Asian ancestry cases, 163,807 East Asian ancestry controls	NA	8q21.13		rs10957978-T	NR	1E-9		0.0946	[0.064-0.125] unit decrease	Affymetrix, Illumina [25843389] (imputed)	N
1205	chr8	81285138	81285139	rs10957978	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	8q21.13		rs10957978-T	0.647003	3E-10		0.014664954	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
1205	chr8	81285138	81285139	rs10957978	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Asthma	28,399 European ancestry cases, 128,843 European ancestry controls	NA	8q21.13	TPD52, ZBTB10	rs10957978-?	NR	1E-11		1.0706638	[1.05-1.09]	Illumina [13747813] (imputed)	N
1205	chr8	81285758	81285759	rs6473226	34785669	Grosche S	2021-11-16	Nat Commun	Rare variant analysis in eczema identifies exonic variants in DUSP1, NOTCH4 and SLC9A4.	Eczema	20,016 European ancestry cases, 380,433 European ancestry controls	NA	8q21.13		rs6473226-C	0.6261	7E-11		0.93		Affymetrix, Illumina [9397031] (imputed)	N
1205	chr8	81285891	81285892	rs6473227	26482879	Paternoster L	2015-10-19	Nat Genet	Multi-ancestry genome-wide association study of 21,000 cases and 95,000 controls identifies new risk loci for atopic dermatitis.	Atopic dermatitis	18,900 European ancestry cases, 1,472 Japanese ancestry cases, 422 African American cases, 300 Latino cases, 305 cases, 84,166 European ancestry controls, 7,966 Japanese ancestry controls, 844 African American controls, 1,592 Latino controls, 896 controls	30,588 European ancestry cases, 459 African American cases, 1,012 Chinese ancestry cases, 226,537 European ancestry controls, 729 African American controls, 1,362 Chinese ancestry controls	8q21.13	MIR5708, ZBTB10	rs6473227-C	0.39	2E-16	(EA, fixed effects)	1.0638298		Illumina [15539996] (imputed)	N
1205	chr8	81285891	81285892	rs6473227	26482879	Paternoster L	2015-10-19	Nat Genet	Multi-ancestry genome-wide association study of 21,000 cases and 95,000 controls identifies new risk loci for atopic dermatitis.	Atopic dermatitis	18,900 European ancestry cases, 1,472 Japanese ancestry cases, 422 African American cases, 300 Latino cases, 305 cases, 84,166 European ancestry controls, 7,966 Japanese ancestry controls, 844 African American controls, 1,592 Latino controls, 896 controls	30,588 European ancestry cases, 459 African American cases, 1,012 Chinese ancestry cases, 226,537 European ancestry controls, 729 African American controls, 1,362 Chinese ancestry controls	8q21.13	MIR5708, ZBTB10	rs6473227-A	0.61	5E-18	(random effects)		NR	Illumina [15539996] (imputed)	N
1205	chr8	81286297	81286298	rs6986109	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	8q21.13	NR	rs6986109-T	0.704331	4E-14		0.016486	[0.012-0.021] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
1205	chr8	81287174	81287175	rs13263709	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pediatric asthma	27,712 European ancestry cases, 411,131 European ancestry controls, 547 East Asian ancestry cases, 161,803 East Asian ancestry controls	NA	8q21.13		rs13263709-C	NR	3E-9		0.0571	[0.038-0.076] unit decrease	Affymetrix, Illumina [25832605] (imputed)	N
1205	chr8	81287174	81287175	rs13263709	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Asthma	38,369 European ancestry cases, 411,131 European ancestry controls, 13,015 East Asian ancestry cases, 162,933 East Asian ancestry controls	NA	8q21.13		rs13263709-C	NR	2E-13		0.053	[0.039-0.067] unit decrease	Affymetrix, Illumina [25837673] (imputed)	N
1205	chr8	81287174	81287175	rs13263709	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	8q21.13	NR	rs13263709-?	NR	1E-16				Affymetrix [~ 8270000] (imputed)	N
1205	chr8	81287174	81287175	rs13263709	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	8q21.13	MIR5708, TPD52	rs13263709-T	0.350806	2E-24		1.0685416	[1.06-1.08]	Affymetrix [8274727] (imputed)	N
1205	chr8	81287174	81287175	rs13263709	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	8q21.13	TPD52, ZBTB10	rs13263709-T	0.3652	8E-22				Affymetrix [15688218] (imputed)	N
1205	chr8	81289786	81289787	rs10957979	31959851	Olafsdottir TA	2020-01-20	Nat Commun	Eighty-eight variants highlight the role of T cell regulation and airway remodeling in asthma pathogenesis.	Asthma	16,247 European ancestry cases, 346,486 European ancestry controls, 52,942 cases, 355,713 controls	NA	8q21.13	ZBTB10, MIR5708, TPD52, ZNF704, MRPS28, LOC101927040	rs10957979-A	0.35124	6E-22		1.0653825	[1.05-1.08]	Affymetrix [32463443] (imputed)	N
1205	chr8	81289786	81289787	rs10957979	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls	NA	8q21.13	TPD52, ZBTB10	rs10957979-G	0.65	2E-8		0.07	[0.05-0.09] unit decrease	Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
1205	chr8	81290386	81290387	rs2370615	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (glucocorticoids)	17,352 European ancestry cases, 188,348 European ancestry controls, 13,102 East Asian ancestry cases, 165,624 East Asian ancestry controls	NA	8q21.13		rs2370615-T	NR	4E-11		0.0763	[0.054-0.099] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1205	chr8	81291644	81291645	rs4739738	34103634	Valette K	2021-06-08	Commun Biol	Prioritization of candidate causal genes for asthma in susceptibility loci derived from UK Biobank.	Asthma	56,167 White-British ancestry cases, 352,255 White-British ancestry controls	NA	8q21.13	TPD52, ZBTB10	rs4739738-A	0.641571942937529	2E-23		0.06791202	[0.055-0.081] unit decrease	Affymetrix [35186738] (imputed)	N
1205	chr8	81291644	81291645	rs4739738	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	8q21.13	ZBTB10	rs4739738-G	0.36	5E-40				NR [> 9500000] (imputed)	N
1205	chr8	81291644	81291645	rs4739738	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	8q21.13	ZBTB10	rs4739738-G	0.364996	2E-32		1.0765022	[1.06345285866694-1.08971161467683]	NR [9572556] (imputed)	N
1205	chr8	81291644	81291645	rs4739738	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	8q21.13	NR	rs4739738-?	NR	6E-17				Affymetrix [~ 8270000] (imputed)	N
1205	chr8	81291644	81291645	rs4739738	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (childhood onset)	9,433 British ancestry cases, 318,237 British ancestry controls	NA	8q21.13	TPD52, ZBTB10	rs4739738-G	0.359	3E-13		1.117	[1.084-1.151]	Affymetrix [10894596] (imputed)	N
1205	chr8	81291644	81291645	rs4739738	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (adult onset)	21,564 British ancestry cases, 318,237 British ancestry controls	NA	8q21.13	TPD52, ZBTB10	rs4739738-G	0.359	9E-8		1.057	[1.036-1.079]	Affymetrix [10894596] (imputed)	N
1205	chr8	81291644	81291645	rs4739738	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (glucocorticoids)	17,352 European ancestry cases, 188,348 European ancestry controls	NA	8q21.13	U6	rs4739738-G	0.358014	2E-11		0.078805424	[0.056-0.102] unit increase	Affymetrix [7288503] (imputed)	N
1205	chr8	81291644	81291645	rs4739738	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	8q21.13		rs4739738-?	NR	6E-10				NR [~ 8900000] (imputed)	N
1205	chr8	81291878	81291879	rs7009110	24388013	Ferreira MA	2013-12-30	J Allergy Clin Immunol	Genome-wide association analysis identifies 11 risk variants associated with the asthma with hay fever phenotype.	Asthma and hay fever	6,685 European ancestry cases, 14,091 European ancestry controls	878 European ancestry cases, 2,455 European ancestry controls	8q21.13	ZBTB10	rs7009110-T	0.36	4E-9		1.14	[1.09-1.19]	Illumina [up to 4972397] (imputed)	N
1205	chr8	81292598	81292599	rs7824394	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	8q21.13	NR	rs7824394-C	0.640633	1E-13		0.0238511	[0.018-0.03] unit increase	Affymetrix [16577313] (imputed)	N
1205	chr8	81292598	81292599	rs7824394	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	8q21.13	MIR5708, ZBTB10	rs7824394-A	0.37	4E-20		1.05	[1.04-1.06]	Affymetrix, Illumina [8307659] (imputed)	N
1205	chr8	81292598	81292599	rs7824394	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Allergy	66,973 European ancestry cases, 113,768 European ancestry controls	NA	8q21.13	TPD52, ZBTB10	rs7824394-?	NR	1E-9		1.0504202	[1.03-1.07]	Illumina [12845910] (imputed)	N
1205	chr8	81294701	81294702	rs2221641	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	8q21.13	MIR5708, ZBTB10	rs2221641-?	NR	2E-30		1.088	[1.07-1.1]	Affymetrix [9000000] (imputed)	N
1205	chr8	81294701	81294702	rs2221641	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	8q21.13	MIR5708, ZBTB10	rs2221641-C	NR	3E-24		1.073	[1.06-1.09]	Affymetrix [9000000] (imputed)	N
1205	chr8	81295743	81295744	rs2102418	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (adrenergics, inhalants)	28,880 European ancestry cases, 147,565 European ancestry controls, 5,880 East Asian ancestry cases, 172,846 East Asian ancestry controls	NA	8q21.13		rs2102418-T	NR	4E-23		0.0833	[0.067-0.1] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1205	chr8	81295743	81295744	rs2102418	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (adrenergics, inhalants)	28,880 European ancestry cases, 147,565 European ancestry controls	NA	8q21.13	U6	rs2102418-G	0.365913	4E-20		0.08578582	[0.067-0.104] unit increase	Affymetrix [7288503] (imputed)	N
1205	chr8	81298807	81298808	rs13274961	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	8q21.13		rs13274961-A	NR	2E-10		0.011	[0.0077-0.0143] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
1205	chr8	81299765	81299766	rs6473228	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic disease (asthma, hay fever or eczema)	106,772 European ancestry cases, 239,773 European ancestry controls	83,335 cases, 34,934 controls	8q21.13	NR	rs6473228-G	0.3652	2E-15		1.046	[1.035-1.057]	Affymetrix [15688218] (imputed)	N
1205	chr8	81299765	81299766	rs6473228	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Respiratory diseases	approximately 459,000 European ancestry individuals	NA	8q21.13		rs6473228-?	NR	2E-25				NR [~ 8900000] (imputed)	N
1205	chr8	81300680	81300681	rs2136016	29785011	Zhu Z	2018-05-21	Nat Genet	A genome-wide cross-trait analysis from UK Biobank highlights the shared genetic architecture of asthma and allergic diseases.	Asthma or allergic disease (pleiotropy)	14,085 European asthma cases, 25,685 European ancestry allergic diseases cases, 76,768 European ancestry controls	NA	8q21.13	ZBTB10	rs2136016-?	NR	2E-9		1.09		NR [74888535] (imputed)	N
1205	chr8	81302012	81302012	rs35204956	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (adult onset)	26,582 European ancestry cases, 300,671 European ancestry controls	16,297 European ancestry cases, 217,711 European ancestry controls	8q21.13	MIR5708, ZBTB10	rs35204956-?	NR	4E-16		1.061	[1.05-1.07]	Affymetrix [9000000] (imputed)	N
1205	chr8	81302012	81302012	rs35204956	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	8q21.13	MIR5708, ZBTB10	rs35204956-T	NR	6E-24		1.073	[1.06-1.09]	Affymetrix [9000000] (imputed)	N
1205	chr8	81303038	81303039	rs2001628	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	8q21.13	NR	rs2001628-?	NR	6E-15				Affymetrix [~ 8270000] (imputed)	N
1205	chr8	81303038	81303039	rs2001628	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	8q21.13	NR	rs2001628-?	NR	1E-12				Affymetrix [~ 8270000] (imputed)	N
1205	chr8	81304495	81304496	rs28656344	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q21.13	NR	rs28656344-A	0.329695	3E-17				Affymetrix, Illumina [19872809] (imputed)	N
1205	chr8	81308149	81308150	rs7000782	22197932	Paternoster L	2011-12-25	Nat Genet	Meta-analysis of genome-wide association studies identifies three new risk loci for atopic dermatitis.	Atopic dermatitis	5,606 European ancestry cases, 20,565 European ancestry controls	5,419 European ancestry cases, 19,833 European ancestry controls	8q21.13	ZBTB10	rs7000782-A	0.43	1E-6		1.09	[1.05-1.13]	Affymetrix, Illumina [~ 2500000] (imputed)	N
1205	chr8	81315032	81315033	rs72688039	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	8q21.13	NR	rs72688039-A	NR	2E-19		0.0498	[0.039-0.061] unit decrease	Affymetrix [9000000] (imputed)	N
1205	chr8	81318891	81318892	rs10091870	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	8q21.13	NR	rs10091870-?	NR	4E-9				Affymetrix [~ 8270000] (imputed)	N
1205	chr8	81327516	81327517	rs28395286	32131869	Arbeeva L	2020-03-04	J Foot Ankle Res	Genome-wide meta-analysis identified novel variant associated with hallux valgus in Caucasians.	Hallux valgus	609 European ancestry male cases, 1,666 European ancestry male controls	NA	8q21.13	RNU6-1213P	rs28395286-T	0.05	7E-7		2.07	[1.55-2.76]	Affymetrix, Illumina [up to 7729175] (imputed)	N
1205	chr8	81333597	81333598	rs10216789	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	8q21.13	NR	rs10216789-G	NR	3E-18		0.0301	[0.023-0.037] unit increase	Affymetrix [9000000] (imputed)	N
1205	chr8	81335061	81335062	rs272604	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	8q21.13	NR	rs272604-G	NR	5E-20		0.0371	[0.029-0.045] unit decrease	Affymetrix [9000000] (imputed)	N
1205	chr8	81345027	81345028	rs141846544	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		8q21.13	Intergenic	rs141846544-T	0.996	9E-6	(liability model)	0.65	[0.36-0.94] unit decrease	NR [19725427] (imputed)	N
1205	chr8	81348082	81348083	rs62515066	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	8q21.13	NR	rs62515066-G	NR	2E-11		0.0603	[0.043-0.078] unit increase	Affymetrix [9000000] (imputed)	N
1205	chr8	81355862	81355863	rs16907718	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	8q21.13	NR	rs16907718-T	0.1658	7E-6	(EA)	0.0404	[0.023-0.058] unit increase	Illumina [~ 11800000] (imputed)	N
1205	chr8	81357701	81357702	rs400824	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine - clinic-based	5,175 European ancestry clinic-based cases, 13,972 European ancestry clinic-based controls	NA	8q21.13	intergenic	rs400824-?	0.7	9E-6		1.12	[1.06-1.19]	Affymetrix, Illumina [~ 2300000] (imputed)	N
1205	chr8	81363533	81363534	rs11990607	31630189	Casanova F	2019-10-20	Hum Mol Genet	A genome-wide association study implicates multiple mechanisms influencing raised urinary albumin-creatinine ratio.	Urinary albumin-to-creatinine ratio	437,027 European ancestry individuals	60,130 individuals	8q21.13	ZBTB1	rs11990607-A	0.835	3E-8	(EA)	0.015	[0.0091-0.0209] unit increase	NR [12082474] (imputed)	N
1205	chr8	81364204	81364205	rs6998967	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals, 6,795 African American individuals, 6,324 East Asian ancestry individuals, 2,335 South Asian ancestry individuals, 1,442 Hispanic individuals	NA	8q21.13	ZBTB10	rs6998967-A	NR	2E-8		0.0148	[0.0095-0.0201] unit decrease	Affymetrix, Illumina [8034757] (imputed)	N
1205	chr8	81364204	81364205	rs6998967	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals	NA	8q21.13	ZBTB10	rs6998967-A	0.1664	1E-8		0.0152428	[0.01-0.0205] unit decrease	Affymetrix, Illumina [8603712] (imputed)	N
1205	chr8	81364204	81364205	rs6998967	26562150	Seldin MF	2015-10-10	Mol Med	Genome-wide Association Study of Late-Onset Myasthenia Gravis: Confirmation of TNFRSF11A, and Identification of ZBTB10 and Three Distinct HLA Associations.	Late-onset myasthenia gravis	532 European ancestry cases, 2,128 European ancestry controls	NA	8q21.13	ZBTB10	rs6998967-G	0.83	9E-10		1.8867927	[1.54-2.38]	Illumina [6175472] (imputed)	N
1205	chr8	81374094	81374095	rs113605295	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	8q21.13	NR	rs113605295-T	0.06389199999999995	3E-14		0.0120505	[0.0087-0.0154] unit increase	Affymetrix [16582909] (imputed)	N
1205	chr8	81374094	81374095	rs113605295	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	8q21.13	NR	rs113605295-T	0.06389199999999995	3E-15		0.013785	[0.01-0.018] unit increase	Affymetrix [16582965] (imputed)	N
1205	chr8	81375456	81375457	rs16907751	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	8q21.13		rs16907751-T	NR	4E-12		0.0211	[0.015-0.027] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1205	chr8	81375456	81375457	rs16907751	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	8q21.13		rs16907751-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1205	chr8	81375456	81375457	rs16907751	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	8q21.13	NA	rs16907751-T	0.0877	2E-11		0.0194	[0.014-0.025] unit decrease	NR [~ 27400000] (imputed)	N
1205	chr8	81375456	81375457	rs16907751	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	8q21.13	NA	rs16907751-T	0.0877	2E-11		0.0194	[0.014-0.025] unit decrease	NR [~ 27400000] (imputed)	N
1205	chr8	81375456	81375457	rs16907751	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	8q21.13	NR	rs16907751-C	NR	1E-9		0.029	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
1205	chr8	81375456	81375457	rs16907751	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	8q21.13	MIR5708, ZBTB10	rs16907751-T	0.13	1E-13		0.031	[0.023-0.039] unit decrease	Illumina [6108953] (imputed)	N
1205	chr8	81375456	81375457	rs16907751	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	8q21.13	NR	rs16907751-T	0.0722737779001418	3E-9		0.037375808	unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1205	chr8	81375456	81375457	rs16907751	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	8q21.13	ZBTB10	rs16907751-C	0.916	1E-7	(EA)	0.035	[0.022-0.048] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1205	chr8	81375456	81375457	rs16907751	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	8q21.13	ZBTB10	rs16907751-C	0.913	4E-8	(EA, men)	0.047	[0.031-0.064] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1205	chr8	81375456	81375457	rs16907751	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	8q21.13	ZBTB10	rs16907751-C	0.912	2E-7		0.033	[0.02-0.045] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1205	chr8	81376290	81376290	rs148874756	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	8q21.13		rs148874756-CTGT	0.296142	2E-14		0.018614957	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1205	chr8	81389790	81389791	rs11993814	27539887	Chahal HS	2016-08-19	Nat Commun	Genome-wide association study identifies 14 novel risk alleles associated with basal cell carcinoma.	Basal cell carcinoma	12.945 European ancestry cases, 274,252 European ancestry controls	4,242 European ancestry cases, 12,802 European ancestry controls	8q21.13	ZBTB10	rs11993814-C	0.74	9E-11		1.09	[NR]	Illumina [at least 560000] (imputed)	N
1205	chr8	81391682	81391683	rs10102591	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Keratinocyte cancer (MTAG)	at least 18,538 European ancestry cases, at least 340,302 European ancestry controls	NA	8q21.13	Y_RNA	rs10102591-G	0.799806	1E-22		1.1111112	[1.09-1.14]	Affymetrix [7600000] (imputed)	N
1205	chr8	81391682	81391683	rs10102591	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Basal cell carcinoma	31,787 European ancestry cases, 619,351 European ancestry controls	NA	8q21.13	Y_RNA	rs10102591-G	0.772344	4E-25		1.1111112	[1.09-1.14]	Affymetrix, Illumina [up to 9061544] (imputed)	N
1205	chr8	81393696	81393697	rs72688070	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	8q21.13	Y_RNA	rs72688070-T	0.171	2E-13		0.241	[0.18-0.3] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1206	chr8	81395745	81395746	rs6990531	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	8q21.13		rs6990531-G	NR	4E-8		0.0128	[0.0083-0.0173] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1206	chr8	81399179	81399180	rs150539196	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	8q21.13	NR	rs150539196-G	0.03564199999999995	4E-10		0.021834	[0.015-0.029] unit increase	Affymetrix [16578495] (imputed)	N
1206	chr8	81404007	81404008	rs7817124	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	8q21.13	ZBTB10	rs7817124-C	0.240273	6E-9		0.015329854	[0.01-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1206	chr8	81404007	81404008	rs7817124	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	8q21.13	ZBTB10	rs7817124-C	0.247	5E-13		0.0099	[0.0072-0.0126] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
1206	chr8	81404007	81404008	rs7817124	30271922	Clifton EAD	2018-05-03	Commun Biol	Genome-wide association study for risk taking propensity indicates shared pathways with body mass index.	Self-reported risk-taking behaviour	113,882 European ancestry cases, 322,354 European ancestry controls	NA	8q21.13	ZBTB10	rs7817124-C	0.24	6E-10		1.03	[1.020-1.039]	Affymetrix [7736308] (imputed)	N
1206	chr8	81404007	81404008	rs7817124	30271922	Clifton EAD	2018-05-03	Commun Biol	Genome-wide association study for risk taking propensity indicates shared pathways with body mass index.	Body mass index	772,825 individuals	NA	8q21.13	ZBTB10	rs7817124-?	NR	2E-9		0.01	[0.0061-0.0139] unit decrease	Affymetrix [NR]	N
1206	chr8	81404007	81404008	rs7817124	30181555	Strawbridge RJ	2018-09-04	Transl Psychiatry	Genetics of self-reported risk-taking behaviour, trans-ethnic consistency and relevance to brain gene expression.	Self-reported risk-taking behaviour	83,677 British ancestry cases, 244,662 British ancestry controls	2,764 South Asian ancestry cases, 3,139 African Caribbean ancestry cases, 16,169 European ancestry cases, 3,866 mixed ancestry cases, 4,267 South Asian ancestry controls, 4,341 African Caribbean ancestry controls, 31,814 European ancestry controls, 5,988 mixed ancestry controls	8q21.13	NR	rs7817124-C	0.26	2E-7		0.032	[0.02-0.044] unit increase	Affymetrix [NR] (imputed)	N
1206	chr8	81405914	81405915	rs3932815	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	8q21.13	ZBTB10	rs3932815-A	0.29001	2E-12		0.017157113	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1206	chr8	81407173	81407176	rs398067964	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	8q21.13		rs398067964-C	NR	3E-13		0.0197	[0.014-0.025] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
1206	chr8	81408554	81408555	rs58213422	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	8q21.13		rs58213422-G	NR	2E-11		0.0197	[0.014-0.025] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1206	chr8	81408554	81408555	rs58213422	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	8q21.13		rs58213422-?	NR	1E-11				NR [~ 8900000] (imputed)	N
1206	chr8	81411214	81411215	rs55942834	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Skin cancer	25,928 European ancestry cases, 466,275 European ancestry controls, 154 East Asian ancestry cases, 178,572 East Asian ancestry controls	NA	8q21.13		rs55942834-G	NR	6E-12		0.0837	[0.06-0.107] unit decrease	Affymetrix, Illumina [25845421] (imputed)	N
1206	chr8	81411214	81411215	rs55942834	33549134	Adolphe C	2021-02-06	Genome Med	Genetic and functional interaction network analysis reveals global enrichment of regulatory T cell genes influencing basal cell carcinoma susceptibility.	Basal cell carcinoma	17,416 European ancestry cases, 375,455 European ancestry controls	NA	8q21.13	ZBTB10	rs55942834-G	0.193106	1E-16		0.11811678	[0.09-0.146] unit decrease	Affymetrix [7260263] (imputed)	N
1206	chr8	81415567	81415568	rs76844715	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	8q21.13	NR	rs76844715-G	NR	1E-18		0.0455	[0.035-0.056] unit increase	Affymetrix [9000000] (imputed)	N
1206	chr8	81417590	81417591	rs272617	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q21.13	NR	rs272617-T	0.694326	1E-11				Affymetrix, Illumina [17210439] (imputed)	N
1206	chr8	81418641	81418642	rs182120	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	8q21.13	ZBTB10	rs182120-C	0.29014	3E-11		0.016559223	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1206	chr8	81424800	81424801	rs272607	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	8q21.13	NR	rs272607-T	0.709127	5E-12		0.014681	[0.011-0.019] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1206	chr8	81426195	81426196	rs76767219	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	8q21.13	NR	rs76767219-A	NR	6E-37		0.0876	[0.074-0.101] unit increase	Affymetrix [9000000] (imputed)	N
1206	chr8	81426195	81426196	rs76767219	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	8q21.13		rs76767219-A	0.0332	4E-13		0.44310975	[0.32-0.57] mmHg decrease	Affymetrix, Illumina [242865] (imputed)	N
1206	chr8	81426195	81426196	rs76767219	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Hypertension	810,865 European ancestry individuals	354,096 European ancestry individuals	8q21.13		rs76767219-A	0.0319	3E-9		5.90803	z score decrease	Affymetrix, Illumina [239843] (imputed)	N
1206	chr8	81426195	81426196	rs76767219	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	8q21.13		rs76767219-A	0.0332	2E-12		0.27039474	[0.19-0.35] mmHg decrease	Affymetrix, Illumina [242866] (imputed)	N
1206	chr8	81426195	81426196	rs76767219	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	8q21.13	NR	rs76767219-A	0.03464299999999998	2E-12		0.0548531	[0.039-0.071] unit increase	Affymetrix [16577313] (imputed)	N
1206	chr8	81426195	81426196	rs76767219	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	8q21.13	NR	rs76767219-A	0.034553999999999974	7E-83		0.0425796	[0.038-0.047] unit increase	Affymetrix [16582909] (imputed)	N
1206	chr8	81426195	81426196	rs76767219	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	8q21.13	NR	rs76767219-A	0.03445100000000001	2E-50		0.0483815	[0.042-0.055] unit increase	Affymetrix [16585854] (imputed)	N
1206	chr8	81426195	81426196	rs76767219	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	8q21.13	NR	rs76767219-A	0.034553999999999974	1E-58		0.0400642	[0.035-0.045] unit increase	Affymetrix [16582965] (imputed)	N
1206	chr8	81426195	81426196	rs76767219	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	8q21.13	NR	rs76767219-A	0.03445100000000001	5E-34		0.0465804	[0.039-0.054] unit increase	Affymetrix [16585866] (imputed)	N
1206	chr8	81426293	81426293	rs147305104	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	8q21.13		rs147305104-?	NR	1E-7		0.933388	[0.91-0.96]	NR [685523]	N
1206	chr8	81428716	81428717	rs446001	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q21.13	NR	rs446001-A	0.287909	3E-15				Affymetrix, Illumina [24653286] (imputed)	N
1206	chr8	81428716	81428717	rs446001	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	8q21.13	NR	rs446001-A	0.293249	5E-18		0.017607	[0.014-0.022] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
1206	chr8	81428716	81428717	rs446001	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q21.13	NR	rs446001-A	0.288092	1E-13				Affymetrix, Illumina [24558453] (imputed)	N
1206	chr8	81428716	81428717	rs446001	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	8q21.13	NR	rs446001-A	0.293223	1E-15		0.016289	[0.012-0.02] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
1206	chr8	81438419	81438420	rs1051920	22493691	Eriksson N	2012-04-06	PLoS One	Novel associations for hypothyroidism include known autoimmune risk loci.	Hypothyroidism	3,736 European ancestry cases, 35,546 European ancestry controls	NA	8q21.13	ZBTB10, RPSAP47	rs1051920-T	0.254	4E-6		1.143	[1.08-1.21]	Illumina [870065]	N
1206	chr8	81441011	81441012	rs61557287	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	8q21.13		rs61557287-G	NR	5E-12		0.0173	[0.012-0.022] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
1206	chr8	81441011	81441012	rs61557287	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	8q21.13		rs61557287-G	NR	4E-10		0.0162	[0.011-0.021] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
1206	chr8	81442753	81442754	rs62515079	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	8q21.13	NR	rs62515079-G	0.019907000000000008	9E-15		0.0321276	[0.023-0.041] unit increase	Affymetrix [16585854] (imputed)	N
1206	chr8	81442753	81442754	rs62515079	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	8q21.13	NR	rs62515079-G	0.019907000000000008	3E-11		0.0313579	[0.021-0.042] unit increase	Affymetrix [16585866] (imputed)	N
1206	chr8	81443653	81443654	rs272612	29251981	Weafer J	2017-12-01	Exp Clin Psychopharmacol	Hierarchical investigation of genetic influences on response inhibition in healthy young adults.	Inhibitory control	934 European ancestry individuals	NA	8q21.13	intergenic	rs272612-C	0.362	5E-6				Illumina [4873750] (imputed)	N
1206	chr8	81447590	81447591	rs72688090	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	8q21.13	NR	rs72688090-C	NR	2E-17		0.038	[0.029-0.047] unit increase	Affymetrix [9000000] (imputed)	N
1206	chr8	81451994	81451995	rs381349	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	8q21.13	ZBTB10	rs381349-G	0.89219	7E-11		0.0196365	[0.014-0.026] unit increase	NR [13737936] (imputed)	N
1206	chr8	81461973	81461974	rs440837	22829776	Coviello AD	2012-07-19	PLoS Genet	A genome-wide association meta-analysis of circulating sex hormone-binding globulin reveals multiple Loci implicated in sex steroid hormone regulation.	Sex hormone-binding globulin levels	21,791 European ancestry individuals	8,175 European ancestry individuals	8q21.13	ZBTB10	rs440837-A	0.78	7E-8	(Women)	0.042	[0.027-0.057] umol/L decrease	Affymetrix, Illumina [2543887] (imputed)	N
1206	chr8	81461973	81461974	rs440837	22829776	Coviello AD	2012-07-19	PLoS Genet	A genome-wide association meta-analysis of circulating sex hormone-binding globulin reveals multiple Loci implicated in sex steroid hormone regulation.	Sex hormone-binding globulin levels	21,791 European ancestry individuals	8,175 European ancestry individuals	8q21.13	ZBTB10	rs440837-A	0.78	3E-9	(Men + Women)	0.028	[0.019-0.037] umol/L decrease	Affymetrix, Illumina [2543887] (imputed)	N
1206	chr8	81462296	81462297	rs72689705	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	8q21.13	NR	rs72689705-?	NR	5E-8	(AA)	0.7981	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1206	chr8	81467704	81467705	rs142835438	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		8q21.13	Intergenic	rs142835438-A	0.007	8E-7	(liability model)	0.54	[0.32-0.76] unit increase	NR [19725427] (imputed)	N
1206	chr8	81470119	81470120	rs272594	21507922	Ramsuran V	2011-05-01	Clin Infect Dis	Duffy-null-associated low neutrophil counts influence HIV-1 susceptibility in high-risk South African black women.	Neutrophil count	115 African ancestry HIV-negative individuals	NA	8q21.13	RP11-48B3.1, RPSAP47	rs272594-?	NR	1E-6				Illumina [874956]	N
1206	chr8	81475405	81475406	rs148563140	33201861	Lahm H	2020-11-17	J Clin Invest	Congenital heart disease risk loci identified by genome-wide association study in European patients.	Congenital heart disease (transposition of the great arteries)	399 European ancestry cases, 8,486 European ancestry controls	NA	8q21.13	NR	rs148563140-?		3E-8		3.42	[2.20-5.26]	Affymetrix, Illumina [9216527] (imputed)	N
1206	chr8	81512600	81512601	rs112655948	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	8q21.13		rs112655948-?	NR	5E-11				NR [~ 8900000] (imputed)	N
1206	chr8	81525925	81525926	rs73260919	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	8q21.13	ZNF704	rs73260919-G	0.944354	1E-12		0.02858	[0.021-0.036] unit increase	NR [13737936] (imputed)	N
1207	chr8	81538477	81538478	rs112272342	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	8q21.13	NR	rs112272342-T	0.057738	3E-11		0.027053	[0.019-0.035] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1207	chr8	81546627	81546628	rs62515108	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	8q21.13	NR	rs62515108-A	NR	1E-10		0.0523	[0.036-0.068] unit increase	Affymetrix [9000000] (imputed)	N
1207	chr8	81553856	81553857	rs113410521	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	8q21.13	NR	rs113410521-T	0.0645	2E-6	(EA)	0.0603	[0.035-0.085] unit decrease	Illumina [~ 11800000] (imputed)	N
1207	chr8	81565691	81565692	rs9773390	30150663	Pasman JA	2018-08-27	Nat Neurosci	GWAS of lifetime cannabis use reveals new risk loci, genetic overlap with psychiatric traits, and a causal influence of schizophrenia.	Cannabis use	184,765 European ancestry individuals	NA	8q21.13	ZNF704	rs9773390-T	0.933	6E-9		0.171	[0.11-0.23] unit decrease	Affymetrix, Illumina [11733371] (imputed)	N
1208	chr8	81705395	81705396	rs7006546	31219150	Ekenberg C	2019-06-13	J Infect Dis	Single nucleotide polymorphisms in HLA alleles are associated with HIV-1 viral load in demographically diverse, ART-naive participants from the START trial.	Pre-treatment viral load in HIV-1 infection	1,398 European ancestry individuals, 572 Black individuals, 418 Hispanic individuals, 13 Asian ancestry individuals, 39 individuals	NA	8q21.13	ZNF704	rs7006546-C	0.239	4E-17		0.23	[0.18-0.28] unit decrease	Affymetrix [339439]	N
1208	chr8	81709230	81709231	rs527963618	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	8q21.13	NR	rs527963618-C	0.076964	4E-12		0.0246	[0.018-0.032] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1208	chr8	81710348	81710349	rs34955534	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	8q21.13	NR	rs34955534-G	0.900683	7E-12		0.0147669	[0.01-0.019] unit increase	Affymetrix [16578495] (imputed)	N
1208	chr8	81710348	81710349	rs34955534	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	8q21.13	NR	rs34955534-G	0.900187	4E-16		0.041577	[0.031-0.052] unit increase	Affymetrix [16577313] (imputed)	N
1208	chr8	81712344	81712345	rs112655681	33597122	Verbitsky M	2021-02-17	J Am Soc Nephrol	Copy Number Variant Analysis and Genome-wide Association Study Identify Loci with Large Effect for Vesicoureteral Reflux.	Vesicoureteral reflux	1,395 European ancestry cases, 5,366 European ancestry controls	NA	8q21.13	NR	rs112655681-T	0.0164	1E-7	(dominant)	2.459603	[1.76538359314775-3.42681754146485]	Affymetrix, Illumina [6131010] (imputed)	N
1208	chr8	81734508	81734509	rs531082420	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q21.13	NR	rs531082420-A	0.0757434	5E-10				Affymetrix, Illumina [24246363] (imputed)	N
1208	chr8	81749679	81749680	rs17474681	34050765	Zhang L	2021-05-29	J Clin Endocrinol Metab	Joint genome-wide association analyses identified 49 novel loci for age at natural menopause.	Age at menopause	181,219 European ancestry individuals	NA	8q21.13		rs17474681-T	0.93	1E-9		0.17	unit decrease	Illumina [2398641] (imputed)	N
1208	chr8	81758438	81758439	rs1199029	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	8q21.13	NR	rs1199029-T	NR	8E-10		0.0475	[0.032-0.063] unit decrease	Affymetrix [9000000] (imputed)	N
1208	chr8	81771460	81771461	rs1199028	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	8q21.13	NR	rs1199028-C	NR	6E-26		0.0309	[0.025-0.037] unit decrease	Affymetrix [9000000] (imputed)	N
1209	chr8	81789920	81789921	rs10957985	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	8q21.13		rs10957985-?	NR	6E-9				NR [~ 8900000] (imputed)	N
1209	chr8	81800192	81800193	rs6473252	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	8q21.13		rs6473252-T	NR	1E-9		0.0119	[0.0082-0.0156] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
1209	chr8	81800192	81800193	rs6473252	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	8q21.13	ZNF704	rs6473252-T	0.4385	4E-10		0.0043	[0.0029-0.0057] unit increase	Affymetrix, Illumina [8176554] (imputed)	N
1209	chr8	81800192	81800193	rs6473252	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	8q21.13	NR	rs6473252-T	0.4116	8E-7	(EA)	0.0309	[0.019-0.043] unit decrease	Illumina [~ 11800000] (imputed)	N
1209	chr8	81802854	81802855	rs7840329	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	8q21.13	ZNF704, PAG1	rs7840329-A	0.36	2E-8		5.62	z-score increase	Affymetrix [4314223] (imputed)	N
1209	chr8	81811311	81811312	rs4739760	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	8q21.13		rs4739760-C	NR	7E-12		0.0132	[0.0095-0.0169] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
1209	chr8	81813345	81813346	rs1579834	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental extreme longevity (95 years and older)	1,339 middle-aged British cases, 40,934 middle-aged British controls	NA	8q21.13	NR	rs1579834-?	NR	9E-6		0.0052	[0.0029-0.0075] unit decrease	Affymetrix [9658292] (imputed)	N
1209	chr8	81820172	81820173	rs140185879	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	8q21.13		rs140185879-A	0.076884	3E-10		0.0261169	[0.018-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
1209	chr8	81827315	81827316	rs79060316	33597122	Verbitsky M	2021-02-17	J Am Soc Nephrol	Copy Number Variant Analysis and Genome-wide Association Study Identify Loci with Large Effect for Vesicoureteral Reflux.	Vesicoureteral reflux	1,395 European ancestry cases, 5,366 European ancestry controls	NA	8q21.13	NR	rs79060316-T	0.0162	9E-8	(dominant)	2.5027747	[1.78758938512479-3.50409400280909]	Affymetrix, Illumina [6131010] (imputed)	N
1209	chr8	81836362	81836363	rs117562850	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	8q21.13	NR	rs117562850-A	NR	1E-11		0.0434	[0.031-0.056] unit increase	Affymetrix [9000000] (imputed)	N
1209	chr8	81849305	81849306	rs2400362	26265699	Karol SE	2015-08-11	Blood	Genetics of glucocorticoid-associated osteonecrosis in children with acute lymphoblastic leukemia.	Glucocorticoid-induced osteonecrosis (age 10 years and older)	230 osteonecrosis cases, 1,238 treated controls	NA	8q21.13	PAG1	rs2400362-?	NR	4E-6				Affymetrix, Illumina [NR] (imputed)	N
1209	chr8	81870785	81870786	rs113976091	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	8q21.13	NR	rs113976091-G	NR	5E-12		0.0413	[0.03-0.053] unit increase	Affymetrix [9000000] (imputed)	N
1209	chr8	81878653	81878654	rs1866274	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8q21.13	ZNF704	rs1866274-?	NR	7E-6	(ureidopropionic acid)	0.20563625	[0.12-0.3] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1209	chr8	81905532	81905533	rs895267	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Skin reflectance (Melanin index)	720 South Asian ancestry individuals		8q21.13	NR	rs895267-A	NR	7E-6	(conditioned on rs1426654)	0.253269	[0.14-0.36] unit decrease	Affymetrix, Illumina [at least 398118] (imputed)	N
1210	chr8	81986952	81986953	rs5003154	24163127	Figueroa JD	2013-10-24	Hum Mol Genet	Genome-wide association study identifies multiple loci associated with bladder cancer risk.	Bladder cancer	6,911 European ancestry cases, 11,818 European ancestry controls	801 cases, 1,307 controls	8q21.13	NR	rs5003154-?	NR	1E-6		1.11	[1.06-1.16]	Illumina [462190]	N
1210	chr8	82027671	82027672	rs10097731	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	8q21.13	NR	rs10097731-T	NR	1E-12		0.0251	[0.018-0.032] unit increase	Affymetrix [9000000] (imputed)	N
1210	chr8	82027671	82027672	rs10097731	23022100	Franceschini N	2012-09-26	Am J Hum Genet	Discovery and fine mapping of serum protein loci through transethnic meta-analysis.	Serum total protein level	Up to 25,539 European ancestry individuals, 10,168 Japanese ancestry individuals	NA	8q21.13	PAG1	rs10097731-T	0.15	6E-8		0.025	[0.016-0.034] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1210	chr8	82038227	82038228	rs17578570	31250787	Fawns-Ritchie C	2019-06-01	Twin Res Hum Genet	Genetic Contributions to Health Literacy.	Health literacy	1,771 English ancestry cases, 4,012 English ancestry controls	NA	8q21.13	PAG1	rs17578570-A	NR	4E-6		0.02774	[0.016-0.039] unit increase	Illumina [NR] (imputed)	N
1210	chr8	82041463	82041464	rs9298343	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	8q21.13		rs9298343-C	0.413546	9E-15		0.017514333	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1210	chr8	82041713	82041714	rs10103921	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q21.13	NR	rs10103921-G	0.377871	2E-14				Affymetrix, Illumina [23467995] (imputed)	N
1210	chr8	82041713	82041714	rs10103921	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	8q21.13	NR	rs10103921-G	0.418612	1E-16		0.016208	[0.012-0.02] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1210	chr8	82042899	82042900	rs10464891	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	8q21.13		rs10464891-A	NR	5E-21		0.0281	[0.022-0.034] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
1210	chr8	82047457	82047458	rs7461427	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	8q21.13	NR	rs7461427-?	NR	7E-6				Affymetrix [NR]	N
1210	chr8	82047827	82047828	rs7823749	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or recurrent major depressive disorder x sex interaction (3df)	31,567 European ancestry schizophrenia cases,19,924 European ancestry bipolar disorder cases, 5,314 European ancestry recurrent major depressive disorder cases, 78,190 European ancestry controls, 1,836 East Asian ancestry schizophrenia cases, 3,383 East Asian ancestry controls	NA	8q21.13	NR	rs7823749-A	NR	3E-6				NR [NR] (imputed)	N
1210	chr8	82047827	82047828	rs7823749	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or major depressive disorder x sex interaction (3df)	31,567 European ancestry schizophrenia cases,19,924 European ancestry  bipolar disorder cases, 15,970 European ancestry major depressive disorder cases, 93,025 European ancestry controls, 1,836 East Asian ancestry schizophrenia cases, 3,383 East Asian ancestry controls	NA	8q21.13	NR	rs7823749-A	NR	3E-6				NR [NR] (imputed)	N
1210	chr8	82050485	82050486	rs35015104	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8q21.13	NR	rs35015104-G	0.01045	3E-8	(ACSM2B)	2.004	NR unit increase	Illumina [1671387] (imputed)	N
1211	chr8	82053111	82053112	rs79227226	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8q21.13	NR	rs79227226-A	0.01742	8E-9	(HYOU1)	0.1541	NR unit increase	Illumina [1671387] (imputed)	N
1211	chr8	82058535	82058535	rs11404483	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	8q21.13		rs11404483-CA	NR	8E-15		0.02	[0.015-0.025] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
1211	chr8	82058535	82058535	rs11404483	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	8q21.13		rs11404483-C	0.283184	3E-14		0.018776894	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1211	chr8	82134048	82134049	rs148999089	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8q21.13	NR	rs148999089-T	0.01045	4E-9	(HYOU1)	0.1736	NR unit increase	Illumina [1671387] (imputed)	N
1211	chr8	82134048	82134049	rs148999089	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8q21.13	NR	rs148999089-T	0.01045	2E-8	(FKBP4)	0.03854	NR unit increase	Illumina [1671387] (imputed)	N
1211	chr8	82151746	82151747	rs12216812	23049088	Meng W	2012-10-09	Invest Ophthalmol Vis Sci	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		8q21.13	intergenic	rs12216812-?	0.088	3E-9			[NR]	Affymetrix, Illumina [152234]	N
1211	chr8	82154231	82154232	rs7817589	34781942	Zhang Z	2021-11-16	BMC Med	IRF7 and RNH1 are modifying factors of HIV-1 reservoirs: a genome-wide association analysis.	CD4+ T cell-associated HIV-1 RNA-to-DNA ratio in long-term suppressive antiretroviral treated HIV-1	207 Dutch ancestry individuals	NA	8q21.13		rs7817589-C	NR	2E-7		0.252	unit increase	Illumina [4307246] (imputed)	N
1212	chr8	82203216	82203217	rs202280	28935272	Moore KN	2017-09-18	Gynecol Oncol	Genome-wide association study evaluating single-nucleotide polymorphisms and outcomes in patients with advanced stage serous ovarian or primary peritoneal cancer: An NRG Oncology/Gynecologic Oncology Group study.	Overall survival in serous epithelial ovarian cancer treated with paclitaxel and cisplatin	289 European ancestry women	NA	8q21.13	intergenic	rs202280-?	NR	6E-6		2.0		Illumina [636555]	N
1212	chr8	82212297	82212298	rs71519017	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	8q21.13	FABP5, UBE2HP1, PMP2, FABP9	rs71519017-C	NR	7E-6	(mid-sleep time, weekdays)	0.447	[0.25-0.64] unit increase	Affymetrix [7141204] (imputed)	N
1212	chr8	82245450	82245451	rs1909936	32752121	Nedoszytko B	2020-07-31	Int J Mol Sci	Results from a Genome-Wide Association Study (GWAS) in Mastocytosis Reveal New Gene Polymorphisms Associated with WHO Subgroups.	Cutaneous mastocytosis (childhood)	78 European ancestry cases, 5,606 European ancestry controls	NA	8q21.13	NR	rs1909936-C	0.02855	6E-8		3.889	[3.36-4.42]	Illumina [281811]	N
1213	chr8	82343437	82343438	rs182719694	28566273	Scott RA	2017-05-31	Diabetes	An Expanded Genome-Wide Association Study of Type 2 Diabetes in Europeans.	Type 2 diabetes	up to 26,676 European ancestry cases, up to 132,532 European ancestry controls	up to 12,543 European ancestry cases, up to 66,458 European ancestry controls	8q21.13	NR	rs182719694-A	0.8546	6E-6		1.08	[1.05-1.12]	Affymetrix, Illumina [at least 11579618] (imputed)	N
1213	chr8	82395534	82395535	rs77878271	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Fatty acid-binding protein, adipocyte levels	21,758 European ancestry individuals	9,173 individuals	8q21.13		rs77878271-A	0.97	2E-13		0.2056	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1213	chr8	82412992	82412993	rs1304403	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	8q21.13	FABP4	rs1304403-C	0.8459375	7E-7	(FABP4, 9851_9_3)	0.15428418	[0.093-0.215] unit increase	Illumina [> 1000000] (imputed)	N
1214	chr8	82445223	82445224	rs16909318	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral fat	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	8q21.13	LOC646486, FABP4	rs16909318-C	0.88	7E-7	(overall)			Affymetrix, Illumina [2500000] (imputed)	N
1214	chr8	82445708	82445709	rs10113853	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8q21.13	FABP4	rs10113853-?	NR	2E-7	(pyruvate)	0.38485298	[0.24-0.53] unit increase	Affymetrix [at least 2500000] (imputed)	N
1214	chr8	82483029	82483030	rs118137874	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	8q21.13	NR	rs118137874-?	NR	3E-8				Illumina [7760689] (imputed)	N
1214	chr8	82493728	82493729	rs2556575	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Kidney cancer	1,338 European ancestry cases, 410,350 European ancestry controls	NA	8q21.13		rs2556575-G	0.797857	1E-7		1.3196094	NR	Affymetrix [7846216] (imputed)	N
1214	chr8	82519732	82519733	rs117212563	34476894	Schmitz J	2021-09-03	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study and polygenic risk score analysis for hearing measures in children.	Hearing function (left/right asymmetry)	5,344 European ancestry children	NA	8q21.13		rs117212563-T	0.95	1E-5		0.2	[0.12-0.28] unit increase	Illumina [5305352] (imputed)	N
1215	chr8	82607395	82607396	rs146360872	34620984	Skuladottir AT	2021-10-07	Commun Biol	A genome-wide meta-analysis uncovers six sequence variants conferring risk of vertigo.	Vertigo	48,072 European ancestry cases, 894,541 European ancestry controls	NA	8q21.13		rs146360872-A	NR	3E-6		1.25433		Affymetrix, Illumina [62056310] (imputed)	N
1215	chr8	82653643	82653644	rs11782652	25581431	Kuchenbaecker KB	2015-01-12	Nat Genet	Identification of six new susceptibility loci for invasive epithelial ovarian cancer.	Epithelial ovarian cancer	4,368 European ancestry cases, 9,123 European ancestry controls,	2,462 European ancestry BRCA1 mutation carrier cases, 12,790 European ancestry BRCA1 mutation carrier controls, up to 631 European ancestry BRCA2 mutation carrier cases, 7,580 European ancestry BRCA2 mutation carrier controls, 9,627 European ancestry serous cases, 1,442 European ancestry non-serous cases, 21,722 European ancestry controls	8q21.13	CHMP4C	rs11782652-G	0.07	3E-10			[1.16-1.32]	Illumina [up to 10962898] (imputed)	N
1215	chr8	82653643	82653644	rs11782652	23535730	Pharoah PD	2013-04-01	Nat Genet	GWAS meta-analysis and replication identifies three new susceptibility loci for ovarian cancer.	Ovarian cancer	3,769 European ancestry cases, 4,396 European ancestry controls	211 East Asian ancestry cases, 972 East Asian ancestry controls, 39,674 European ancestry individuals, 106 Malaysian ancestry cases, 106 Malaysian ancestry controls	8q21.13	CHMP4C, FABP5, PMP2, FABP12, IMPA1, SLC10A5, ZFAND1, SNX16, FABP4	rs11782652-A	0.07	7E-10	(Serious invasive)	1.24	[1.16-1.33]	Illumina [2508744] (imputed)	N
1215	chr8	82653643	82653644	rs11782652	23535730	Pharoah PD	2013-04-01	Nat Genet	GWAS meta-analysis and replication identifies three new susceptibility loci for ovarian cancer.	Ovarian cancer	3,769 European ancestry cases, 4,396 European ancestry controls	211 East Asian ancestry cases, 972 East Asian ancestry controls, 39,674 European ancestry individuals, 106 Malaysian ancestry cases, 106 Malaysian ancestry controls	8q21.13	CHMP4C, FABP5, PMP2, FABP12, IMPA1, SLC10A5, ZFAND1, SNX16, FABP4	rs11782652-A	0.07	6E-9	(All invasive)	1.19	[1.12-1.26]	Illumina [2508744] (imputed)	N
1215	chr8	82657744	82657745	rs74544416	32986727	Kalra G	2020-09-28	PLoS Genet	Biological insights from multi-omic analysis of 31 genomic risk loci for adult hearing difficulty.	Age-related hearing impairment (MTAG)	330,759 European ancestry individuals	NA	8q21.13		rs74544416-?	NR	2E-8		5.591212	z score increase	Affymetrix [NR] (imputed)	N
1215	chr8	82665476	82665480	rs137960856	34108613	Ivarsdottir EV	2021-06-09	Commun Biol	The genetic architecture of age-related hearing impairment revealed by genome-wide association analysis.	Age-related hearing impairment	121,934 European ancestry cases, 591,699 European ancestry controls	NA	8q21.13	CHMP4C	rs137960856-T	6.96	2E-20	(recessive)	1.56	[NR]	Affymetrix, Illumina [46900000] (imputed)	N
1215	chr8	82676935	82676936	rs6473299	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	8q21.13		rs6473299-G	NR	1E-9		0.0126	[0.0085-0.0167] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1215	chr8	82706127	82706128	rs9693128	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q21.13	NR	rs9693128-A	0.394806	3E-10				Affymetrix, Illumina [17210439] (imputed)	N
1215	chr8	82706127	82706128	rs9693128	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	8q21.13	NR	rs9693128-A	0.391444	2E-12		0.013977	[0.01-0.018] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1216	chr8	82720759	82720760	rs2600605	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	8q21.13	SNX16	rs2600605-A	0.2622	1E-22		1.087	NR	Affymetrix [9154080] (imputed)	N
1216	chr8	82731156	82731157	rs7833790	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Diastolic blood pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	8q21.13	chr8mb82	rs7833790-C	0.746799449	2E-7		0.162	[0.1-0.22] unit increase	Affymetrix [~ 9800000] (imputed)	N
1216	chr8	82740947	82740948	rs114323125	32121467	Adewuyi EO	2020-02-29	Genes (Basel)	Shared Molecular Genetic Mechanisms Underlie Endometriosis and Migraine Comorbidity.	Endometriosis or migraine	17,054 European and Japanese ancestry endometriosis cases, 29,208 European ancestry migraine cases, 191,858 European and Japanese ancestry controls, 172,931 European ancestry controls	NA	8q21.13	NR	rs114323125-C	NR	2E-6	(random effect)	1.0869565	NR	NR [6904914] (imputed)	N
1216	chr8	82754139	82754140	rs4431553	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	8q21.13		rs4431553-?	NR	3E-64				NR [~ 8900000] (imputed)	N
1216	chr8	82767397	82767398	rs1452000	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Brown vs. black hair color	269,394 British ancestry brown hair individuals, 14,526 British ancestry black hair individuals	NA	8q21.13	SNX16	rs1452000-G	0.2634	1E-13		1.11	NR	Affymetrix [9154080] (imputed)	N
1216	chr8	82777715	82777716	rs28823280	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	8q21.13		rs28823280-?	NR	3E-13				NR [~ 8900000] (imputed)	N
1216	chr8	82778561	82778562	rs62512879	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	8q21.13		rs62512879-A	0.4	1E-8		5.72	z score increase	Affymetrix [9061022] (imputed)	N
1216	chr8	82778561	82778562	rs62512879	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	8q21.13	NR	rs62512879-A	0.4084	2E-9				NR [9056863] (imputed)	N
1216	chr8	82824262	82824263	rs13265769	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	8q21.13		rs13265769-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1217	chr8	82849451	82849452	rs10103353	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	8q21.13	SNX16, RALYL	rs10103353-C		3E-6		0.18	unit increase	Affymetrix [at least 2696785] (imputed)	N
1217	chr8	82849451	82849452	rs10103353	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	8q21.13	SNX16, RALYL	rs10103353-C		4E-10		0.147	unit increase	Affymetrix [at least 2696785] (imputed)	N
1217	chr8	82888607	82888608	rs10113213	24709693	Cobb J	2014-04-08	Pharmacogenomics J	Genome-wide data reveal novel genes for methotrexate response in a large cohort of juvenile idiopathic arthritis cases.	Response to methotrexate in juvenile idiopathic arthritis	694 European ancestry child cases	NA	8q21.13	SNX16, RALYL	rs10113213-T	NR	3E-6	(AJC)	1.99	[1.15-2.83] unit decrease	Illumina [586062]	N
1217	chr8	82894305	82894306	rs7839040	24709693	Cobb J	2014-04-08	Pharmacogenomics J	Genome-wide data reveal novel genes for methotrexate response in a large cohort of juvenile idiopathic arthritis cases.	Response to methotrexate in juvenile idiopathic arthritis	694 European ancestry child cases	NA	8q21.13	SNX16, RALYL	rs7839040-G	NR	2E-6	(LJC)	1.81	[1.07-2.55] unit decrease	Illumina [586062]	N
1217	chr8	82917848	82917849	rs76638496	30306274	Shah RL	2018-10-10	Hum Genet	Genome-wide association studies for corneal and refractive astigmatism in UK Biobank demonstrate a shared role for myopia susceptibility loci.	Refractive astigmatism	70,505 European ancestry cases, 17,500 European ancestry controls	NA	8q21.13	SNX16	rs76638496-G	NR	6E-6		1.2062726	[1.1-1.34]	NR [5919636] (imputed)	N
1217	chr8	82928597	82928598	rs7820074	22863734	Ludwig KU	2012-08-05	Nat Genet	Genome-wide meta-analyses of nonsyndromic cleft lip with or without cleft palate identify six new risk loci.	Orofacial clefts	Up to 666 European ancestry trios, 399 European ancestry cases, 1,318 European ancestry controls	up to 795 East Asian ancestry trios	8q21.13	NR	rs7820074-?	NR	9E-6	(Meta-All, NSCL/P)			NR [497084]	N
1218	chr8	83064529	83064530	rs2221578	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	95,119 East Asian ancestry individuals	NA	8q21.13		rs2221578-A	0.069012	4E-8		0.0499766	[0.032-0.068] unit increase	Illumina [13471440] (imputed)	N
1220	chr8	83252585	83252586	rs10504754	28749367	Gondalia R	2017-06-08	Environ Health Perspect	Genome-wide Association Study of Susceptibility to Particulate Matter-Associated QT Prolongation.	QT interval (ambient particulate matter interaction)	14,889 European ancestry individuals, 5,707 African American individuals, 1,562 Hispanic individuals	NA	8q21.13	SNX16	rs10504754-A	0.43	2E-6		1.54	[0.91-2.17] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1220	chr8	83253755	83253756	rs28379612	33563987	Tyrrell J	2021-02-09	Nat Commun	Genetic predictors of participation in optional components of UK Biobank.	Acceptance of an invitation to participate in a mental health questionnaire	146,074 European ancestry cases, 148,713 European ancestry controls	NA	8q21.13	NR	rs28379612-T	0.72	4E-8		0.97	[0.96, 0.98]	Affymetrix [39302896] (imputed)	N
1220	chr8	83260230	83260231	rs7000204	28054174	Leslie EJ	2017-01-04	Hum Genet	Genome-wide meta-analyses of nonsyndromic orofacial clefts identify novel associations between FOXE1 and all orofacial clefts, and TP63 and cleft lip with or without cleft palate.	Cleft palate	272 Asian ancestry case-parent trios, 161 Asian ancestry controls, 38 European ancestry cases, 296 European ancestry case-parent trios, 835 European ancestry controls, 40 Latino or African cases, 34 Latino or African case-parent trios, 704 Latino or African controls, 14 case-parent trios.	NA	8q21.13	intergenic	rs7000204-?	NR	5E-6	(Asian)	1.8867927	[1.43-2.5]	Illumina [6090031] (imputed)	N
1220	chr8	83269853	83269854	rs28716319	31263887	Adams MJ	2019-07-01	Int J Epidemiol	Factors associated with sharing e-mail information and mental health survey participation in large population cohorts.	Mental health study participation (completed survey)	122,647 British ancestry cases, 248,781 British ancestry controls	NA	8q21.13	HNRNPA1P4	rs28716319-G	0.28	3E-8		0.0066799	[0.0043-0.009] unit increase	NR [16367095] (imputed)	N
1220	chr8	83323095	83323096	rs12216859	31263163	Liu CT	2019-07-01	Sci Rep	Genome-wide Association Study of Change in Fasting Glucose over time in 13,807 non-diabetic European Ancestry Individuals.	Fasting glucose change (short-term)	8,195 European ancestry individuals	NA	8q21.13	SNX16	rs12216859-A	0.878	1E-6		0.13	[0.077-0.183] unit increase	Affymetrix, Illumina [~ 25000000] (imputed)	N
1221	chr8	83380735	83380736	rs73295430	34106200	Machipisa T	2021-06-09	JAMA Cardiol	Association of Novel Locus With Rheumatic Heart Disease in Black African Individuals: Findings From the RHDGen Study.	Rheumatic heart disease	1,687 Sub-Saharan African ancestry and African ancestry cases, 1,492 Sub-Saharan African ancestry and African ancestry controls, 601 European ancestry, South East Asian ancestry, South Asian ancestry, African ancestry and South African ancestry cases, 454 European ancestry, South East Asian ancestry, South Asian ancestry, African ancestry and South African ancestry controls	NA	8q21.13	LOC105375931, SNX16, LOC101927141	rs73295430-?	NR	4E-7		0.8	0.71-0.88	Illumina [7605010] (imputed)	N
1221	chr8	83380735	83380736	rs73295430	34106200	Machipisa T	2021-06-09	JAMA Cardiol	Association of Novel Locus With Rheumatic Heart Disease in Black African Individuals: Findings From the RHDGen Study.	Rheumatic heart disease	1,687 Sub-Saharan African ancestry and African ancestry cases, 1,492 Sub-Saharan African ancestry and African ancestry controls	NA	8q21.13	LOC105375931, SNX16, LOC101927141	rs73295430-?	NR	1E-6		0.65	0.48-0.82	Illumina [7605010] (imputed)	N
1222	chr8	83575368	83575369	rs74305293	33607655	Imamura M	2021-02-19	Hum Mol Genet	Genome-Wide Association Studies Identify Two Novel Loci Conferring Susceptibility to Diabetic Retinopathy in Japanese Patients with Type 2 Diabetes.	Diabetic retinopathy in type 2 diabetes	5,532 Japanese ancestry cases, 5,565 Japanese ancestry controls	3,010 Japanese ancestry cases, 1,562 Japanese ancestry controls	8q21.13	NR	rs74305293-T	0.279	5E-6		1.14	[1.08-1.20]	Illumina [5790508] (imputed)	N
1222	chr8	83582557	83582558	rs754730014	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	8q21.13	RP11-653B10.1	rs754730014-C	4.1100000000005E-4	2E-9		0.35468405	[0.24-0.47] unit increase	Affymetrix [93095623] (imputed)	N
1223	chr8	83669119	83669120	rs6473383	20445134	Smith NL	2010-05-05	Circ Cardiovasc Genet	Association of genome-wide variation with the risk of incident heart failure in adults of European and African ancestry: a prospective meta-analysis from the cohorts for heart and aging research in genomic epidemiology (CHARGE) consortium.	Heart failure	20,926 European ancestry individuals, 2,895 African ancestry individuals	NA	8q21.13	SNX16	rs6473383-?	0.15	3E-6	(EA)	1.19	[0.99-1.44]	Affymetrix, Illumina [2478304] (imputed)	N
1224	chr8	83861922	83861923	rs77133669	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	8q21.13	Intergenic	rs77133669-G	NR	1E-6		0.0458554	[0.027-0.064] unit increase	Illumina [13520550] (imputed)	N
1225	chr8	83903813	83903814	rs7015622	22041458	Clark SL	2011-11-01	Psychol Med	Pharmacogenomic study of side-effects for antidepressant treatment options in STAR*D.	Response to anti-depressant treatment in major depressive disorder	1,151 European ancestry cases, 288 African American cases	NA	8q21.13	intergenic	rs7015622-C	0.01	1E-6	(Citalopram+Buspirone, Dizziness)			Affymetrix [421789]	N
1225	chr8	83991230	83991231	rs1375785	21130836	Luciano M	2010-12-03	Biol Psychol	Whole genome association scan for genetic polymorphisms influencing information processing speed.	Information processing speed	Up to 4,039 European ancestry individuals	NA	8q21.13	intergenic	rs1375785-A	0.08	8E-6	(2-choice RT)	0.2	[0.10-0.30] unit decrease	Illumina [~ 610000]	N
1225	chr8	84000399	84000400	rs10107150	30954325	Kamboh MI	2019-03-11	Neurobiol Aging	Population-based genome-wide association study of cognitive decline in older adults free of dementia: identification of a novel locus for the attention domain.	Age-related cognitive decline (executive function) (slope of z-scores)	1,145 European ancestry individuals	NA	8q21.13	SNX16, LINC01419	rs10107150-A	0.55	2E-6		0.18	unit increase	Illumina [5600000] (imputed)	N
1226	chr8	84028527	84028528	rs140707667	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	8q21.13		rs140707667-T	NR	3E-6	(sleep efficiency)	6.589	[3.81-9.37] unit decrease	Affymetrix [7141204] (imputed)	N
1226	chr8	84120967	84120968	rs184060364	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	8q21.13		rs184060364-A	NR	2E-6	(wake after sleep onset)	0.241	[0.14-0.34] unit increase	Affymetrix [7141204] (imputed)	N
1227	chr8	84179553	84179554	rs192093332	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	8q21.13	Intergenic	rs192093332-A	NR	2E-7	(between families)	5.179	unit decrease	Affymetrix [up to 15107142] (imputed)	N
1227	chr8	84186168	84186169	rs532352152	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-hip ratio	1,254 whole genome sequenced European ancestry individuals, 3,071 whole genome sequenced individuals, 29,723 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,053 Mylopotamos (founder/genetic isolate) individuals, 879 Pomak (founder/genetic isolate) individuals	206,053 European ancestry individuals	8q21.13	RP11-813B8.2	rs532352152-A	0.9987	5E-6		0.9379	[0.54-1.34] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1227	chr8	84186168	84186169	rs532352152	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	8q21.13	RP11-813B8.2	rs532352152-A	0.9987	7E-6		0.8994	[0.51-1.29] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1227	chr8	84186168	84186169	rs532352152	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	8q21.13	RP11-813B8.2	rs532352152-A	0.9987	2E-8		1.123	[0.73-1.52] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1227	chr8	84186168	84186169	rs532352152	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	8q21.13	RP11-813B8.2	rs532352152-A	0.9987	2E-8		1.123	[0.73-1.52] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1227	chr8	84241091	84241092	rs187422429	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-9 levels	3,634 Finnish ancestry individuals	NA	8q21.13	NR	rs187422429-C		6E-6		0.1711	[0.097-0.245] SD units increase	NR [10700000] (imputed)	N
1227	chr8	84259442	84259443	rs4739938	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	8q21.13	NR	rs4739938-G	0.086101915974297	5E-8		0.008950549	[0.0057-0.0122] unit increase	NR [NR]	N
1227	chr8	84259442	84259443	rs4739938	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	8q21.13	NR	rs4739938-G	0.086101915974297	4E-8		0.014311916	[0.0092-0.0194] unit increase	NR [NR]	N
1227	chr8	84259442	84259443	rs4739938	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	8q21.13	NR	rs4739938-G	0.086101915974297	4E-8		0.0091319345	[0.0059-0.0124] unit increase	NR [NR]	N
1229	chr8	84490117	84490118	rs34531385	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	8q21.2	NR	rs34531385-A	0.496024	3E-8		0.03475611	[0.022-0.047] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1229	chr8	84490117	84490118	rs34531385	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	8q21.2	Intergenic	rs34531385-A	0.5166	3E-8		0.0159	[0.01-0.022] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
1229	chr8	84522771	84522772	rs1826003	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	8q21.2	NR	rs1826003-?	NR	7E-7		4.97	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1230	chr8	84547411	84547412	rs41455947	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	8q21.2	NR	rs41455947-?	NR	7E-9				Affymetrix [NR]	N
1230	chr8	84550254	84550255	rs1387241	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8q21.2	LRRCC1	rs1387241-?	NR	8E-6	(sucrose)	0.22392702	[0.13-0.32] unit increase	Affymetrix [at least 2500000] (imputed)	N
1230	chr8	84574952	84574953	rs7837527	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8q21.2	LRRCC1	rs7837527-?	NR	9E-6	(glycerol)	0.16473415	[0.092-0.237] unit increase	Affymetrix [at least 2500000] (imputed)	N
1231	chr8	84717649	84717650	rs191939331	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	8q21.2		rs191939331-T	NR	5E-6	(wake after sleep onset)	0.1989	[0.11-0.28] unit increase	Affymetrix [7141204] (imputed)	N
1231	chr8	84746515	84746516	rs11780883	31220337	Carr DF	2019-06-20	Clin Pharmacol Ther	Genome-wide association study of statin-induced myopathy in patients recruited using the UK clinical practice research datalink.	Atorvastatin-induced myopathy	28 European ancestry cases, 2,501 controls	NA	8q21.2	intergenic	rs11780883-?	NR	1E-6		4.5454545	[2.27-9.09]	Illumina [654642] (imputed)	N
1231	chr8	84750056	84750057	rs79781504	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	8q21.2	Intergenic	rs79781504-A	NR	2E-8	(between families)	5.603	unit decrease	Affymetrix [up to 15107142] (imputed)	N
1231	chr8	84759526	84759526	rs755802816	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	8q21.2	RP11-120I21.2	rs755802816-T	0.9988	5E-6		0.7663	[0.44-1.09] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1231	chr8	84759526	84759526	rs755802816	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	8q21.2	RP11-120I21.2	rs755802816-T	0.9988	5E-6		0.7663	[0.44-1.09] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1232	chr8	84838399	84838400	rs6992798	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Hepatitis B	1,425 European ancestry cases, 218,180 European ancestry controls	NA	8q21.2	NR	rs6992798-?	NR	9E-6		0.2364	[0.13-0.34] unit increase	Illumina [at least 560000] (imputed)	N
1232	chr8	84928566	84928567	rs187743572	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Caudate nucleus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	8q21.2	NR	rs187743572-?		8E-6				Illumina [4322238] (imputed)	N
1234	chr8	85077685	85077686	rs733594	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	8q21.2	NR	rs733594-C	NR	1E-9		0.017	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
1234	chr8	85077685	85077686	rs733594	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	8q21.2	NR	rs733594-T	0.731202868724191	2E-8		0.01730739	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1234	chr8	85079708	85079709	rs2033732	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	8q21.2	LINC01419, RALYL	rs2033732-C	0.76	9E-9		0.016	[0.01-0.022] unit increase	Illumina [6108953] (imputed)	N
1234	chr8	85079708	85079709	rs2033732	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	8q21.2	RALYL	rs2033732-C	0.749	2E-7		0.018	[0.011-0.024] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1234	chr8	85079708	85079709	rs2033732	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	8q21.2	RALYL	rs2033732-C	0.747	5E-8	(EA)	0.019	[0.012-0.026] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1234	chr8	85081618	85081619	rs7821259	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	8q21.2	NR	rs7821259-?	NR	6E-10				Affymetrix [~ 8270000] (imputed)	N
1234	chr8	85081618	85081619	rs7821259	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	8q21.2		rs7821259-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1234	chr8	85089436	85089437	rs2196618	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	8q21.2	NA	rs2196618-A	0.2634	1E-12		0.0137	[0.01-0.0174] unit decrease	NR [~ 27400000] (imputed)	N
1235	chr8	85238433	85238434	rs67589009	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	8q21.2	NR	rs67589009-?	NR	4E-7		5.085	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1235	chr8	85276066	85276067	rs118149821	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	8q21.2	RALYL, TPM3P3	rs118149821-T	NR	4E-6	(number of awakenings after sleep onset, weekdays)	0.327	[0.19-0.47] unit increase	Affymetrix [7141204] (imputed)	N
1235	chr8	85286773	85286774	rs117893056	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	8q21.2	RALYL	rs117893056-T	NR	4E-8		0.022196304	[0.014-0.03] unit decrease	Affymetrix [NR]	N
1236	chr8	85403655	85403656	rs783783	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	8q21.2	NR	rs783783-?	NR	2E-7		5.165	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1236	chr8	85446566	85446567	rs12677170	30718454	Arnau-Soler A	2019-02-04	Transl Psychiatry	Genome-wide by environment interaction studies of depressive symptoms and psychosocial stress in UK Biobank and Generation Scotland.	Depressive symptoms x independent stressful life events interaction (2df test)	4,919 European ancestry individuals	NA	8q21.2	RALYL	rs12677170-C	0.1169	5E-6		0.0295941	NR unit decrease	Illumina [560351]	N
1236	chr8	85446566	85446567	rs12677170	30718454	Arnau-Soler A	2019-02-04	Transl Psychiatry	Genome-wide by environment interaction studies of depressive symptoms and psychosocial stress in UK Biobank and Generation Scotland.	Depressive symptoms x independent stressful life events interaction (1df test)	4,919 European ancestry individuals	NA	8q21.2	RALYL	rs12677170-C	0.1169	2E-6		0.074386	NR unit decrease	Illumina [560351]	N
1237	chr8	85475897	85475898	rs76494377	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Trunk fat mass	3,399 whole genome sequenced individuals, 12,838 European ancestry individuals	10,667 European ancestry individuals	8q21.2	RALYL	rs76494377-A	0.9962	5E-6		0.4907	[0.28-0.7] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1237	chr8	85523755	85523756	rs28465008	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	8q21.2	NR	rs28465008-?	NR	4E-11				Affymetrix [~ 8270000] (imputed)	N
1237	chr8	85529669	85529670	rs570913543	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris color (a* coordinate)	329 South Asian ancestry individuals		8q21.2	intergenic	rs570913543-T	0.127083	9E-6		0.529699	[0.3-0.76] unit increase	Illumina [640625] (imputed)	N
1238	chr8	85696336	85696337	rs2634047	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	8q21.2		rs2634047-?	NR	4E-11				NR [~ 8900000] (imputed)	N
1238	chr8	85703064	85703065	rs78565420	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	8q21.2		rs78565420-T	NR	1E-8		0.0266	[0.017-0.036] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1238	chr8	85703064	85703065	rs78565420	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	8q21.2		rs78565420-T	NR	1E-9		0.0323	[0.022-0.043] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1238	chr8	85703064	85703065	rs78565420	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		8q21.2	RALYL	rs78565420-C	0.948091	3E-9		0.018757	[0.013-0.025] unit decrease	Affymetrix [12370749]	N
1238	chr8	85703064	85703065	rs78565420	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	8q21.2	NR	rs78565420-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
1238	chr8	85703064	85703065	rs78565420	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	8q21.2	RALYL	rs78565420-T	NR	3E-8		5.559	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1239	chr8	85732903	85732904	rs140174489	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	8q21.2	NR	rs140174489-?	NR	3E-7		0.3418	[0.21-0.47] unit decrease	NR [13958389] (imputed)	N
1239	chr8	85790235	85790236	rs75881014	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CA1	5,365 Icelandic ancestry individuals	NA	8q21.2		rs75881014-A	0.01317	5E-20		0.741791	[0.58-0.9] unit decrease	Illumina [7506463] (imputed)	N
1239	chr8	85804581	85804582	rs113714691	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	8q21.2	RALYL	rs113714691-T	NR	2E-10		6.368	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1240	chr8	85883307	85883308	rs113332552	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8q21.2	NR	rs113332552-G	0.0122	2E-8	(CLTCL1)	0.2125	NR unit increase	Illumina [1671387] (imputed)	N
1240	chr8	85883307	85883308	rs113332552	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8q21.2	NR	rs113332552-G	0.0122	2E-8	(ABCB6)	0.04405	NR unit increase	Illumina [1671387] (imputed)	N
1240	chr8	85883307	85883308	rs113332552	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8q21.2	NR	rs113332552-G	0.0122	2E-10	(CTSB)	0.6292	NR unit increase	Illumina [1671387] (imputed)	N
1241	chr8	86108148	86108149	rs2403083	24535457	Chouraki V	2014-02-18	Mol Psychiatry	A genome-wide association meta-analysis of plasma A? peptides concentrations in the elderly.	Plasma amyloid beta peptide concentrations (ABx-40)	3,528 European ancestry individuals	NA	8q21.2	E2F5	rs2403083-C	0.261	3E-6		0.11	[0.071-0.149] unit decrease	Illumina [2316178] (imputed)	N
1242	chr8	86155927	86155928	rs13259464	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	8q21.2	CA13	rs13259464-T	0.35171875	4E-7	(CA13, 3420_21_2)	0.12722975	[0.078-0.176] unit decrease	Illumina [> 1000000] (imputed)	N
1242	chr8	86198252	86198253	rs17741049	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	8q21.2	E2F5, CA1, CA3, RP11-219B4.3, RP11-219B4.7, C8orf59, CA13, RP11-219B4.5, RP11-219B4.6	rs17741049-T	0.06820461	8E-20	(EA, Carbonic anhydrase 13)	0.7441	[0.59-0.9] unit decrease	Affymetrix [509946]	N
1242	chr8	86240891	86240892	rs139959399	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Reticulocyte count	437,291 European ancestry individuals	NA	8q21.2		rs139959399-?	NR	2E-8		0.379527	[0.25-0.51] unit increase	NR [9800000] (imputed)	N
1242	chr8	86242012	86242013	rs773539602	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Reticulocyte count	437,291 European ancestry individuals	NA	8q21.2		rs773539602-?	NR	2E-16		0.405377	[0.3-0.51] unit increase	NR [9800000] (imputed)	N
1242	chr8	86242012	86242013	rs773539602	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean sphered cell volume	437,736 European ancestry individuals	NA	8q21.2		rs773539602-?	NR	3E-8		0.253589	[0.16-0.35] unit decrease	NR [9800000] (imputed)	N
1242	chr8	86242012	86242013	rs773539602	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean reticulocyte volume	436,944 European ancestry individuals	NA	8q21.2		rs773539602-?	NR	7E-12		0.345195	[0.25-0.45] unit decrease	NR [9800000] (imputed)	N
1242	chr8	86242012	86242013	rs773539602	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	High light scatter reticulocyte count	437,723 European ancestry individuals	NA	8q21.2		rs773539602-?	NR	2E-16		0.39883	[0.3-0.5] unit increase	NR [9800000] (imputed)	N
1243	chr8	86253295	86253296	rs2220972	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	8q21.2		rs2220972-T	NR	1E-11		0.0136	[0.0097-0.0175] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
1243	chr8	86253981	86253982	rs1496532	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	8q21.2	CA1	rs1496532-T	0.588008	3E-20		0.020714695	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1243	chr8	86253981	86253982	rs1496532	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q21.2	NR	rs1496532-T	0.550169	2E-13				Affymetrix, Illumina [24246363] (imputed)	N
1243	chr8	86256209	86256210	rs12544332	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	8q21.2	CA1	rs12544332-A	0.588045	9E-30		0.025701186	[0.021-0.03] unit increase	Affymetrix [93095623] (imputed)	N
1243	chr8	86256209	86256210	rs12544332	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	8q21.2	CA1	rs12544332-A	0.588036	7E-34		0.027507143	[0.023-0.032] unit increase	Affymetrix [93095623] (imputed)	N
1243	chr8	86256209	86256210	rs12544332	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	8q21.2	CA1	rs12544332-A	0.588008	4E-37		0.028826281	[0.024-0.033] unit increase	Affymetrix [93095623] (imputed)	N
1243	chr8	86260294	86260295	rs10097917	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	8q21.2	CA1	rs10097917-T	0.59119	1E-30		0.026150463	[0.022-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
1243	chr8	86260294	86260295	rs10097917	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	8q21.2	CA1	rs10097917-T	0.591173	5E-15		0.0160308	[0.012-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1243	chr8	86260294	86260295	rs10097917	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	8q21.2	NR	rs10097917-T	0.593044	1E-15		0.014865	[0.011-0.018] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1243	chr8	86268078	86268078	rs5892942	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	8q21.2	CA1	rs5892942-G	0.581656	5E-24		0.0223887	[0.018-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1243	chr8	86268312	86268313	rs1532423	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	8q21.2		rs1532423-G	NR	1E-15		0.016	[0.012-0.02] unit increase	Affymetrix, Illumina [20536605] (imputed)	N
1243	chr8	86268312	86268313	rs1532423	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	8q21.2	CA1	rs1532423-G	0.5712	1E-9		0.02212958	[0.015-0.029] unit increase	Affymetrix [~ 2500000] (imputed)	N
1243	chr8	86268312	86268313	rs1532423	23720494	Evans DM	2013-05-29	Hum Mol Genet	Genome-wide association study identifies loci affecting blood copper, selenium and zinc.	Blood trace element (Zn levels)	2,603 European ancestry individuals	NA	8q21.2	CA1, CA2, CA3, CA13	rs1532423-A	NR	6E-12		0.178	[0.13-0.23] unit increase	Illumina [> 2500000] (imputed)	N
1243	chr8	86274029	86274030	rs6997458	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	8q21.2	CA1	rs6997458-G	0.5709	2E-10		0.02295637	[0.016-0.03] unit increase	Affymetrix [~ 2500000] (imputed)	N
1243	chr8	86274029	86274030	rs6997458	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	8q21.2	CA1	rs6997458-G	0.5709	2E-10		0.02303281	[0.016-0.03] unit increase	Affymetrix [~ 2500000] (imputed)	N
1243	chr8	86274029	86274030	rs6997458	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	8q21.2	CA1	rs6997458-G	0.5709	5E-11		0.02372143	[0.017-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
1243	chr8	86278376	86278377	rs7824715	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	8q21.2	CA1	rs7824715-G	0.555608	3E-35		0.027727393	[0.023-0.032] unit increase	Affymetrix [93095623] (imputed)	N
1243	chr8	86286556	86286557	rs13273654	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q21.2	NR	rs13273654-G	0.543428	7E-27				Affymetrix, Illumina [21126107] (imputed)	N
1243	chr8	86286556	86286557	rs13273654	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	8q21.2	NR	rs13273654-G	0.575318	7E-27		0.021706	[0.018-0.026] SD unit increase	Affymetrix, Illumina [50282193] (imputed)	N
1243	chr8	86293263	86293264	rs184880542	29555444	Hamer MA	2018-03-16	J Invest Dermatol	Facial Wrinkles in Europeans: a Genome-Wide Association Study.	Facial wrinkles	3,513 north-western European ancestry individuals	599 north-western European ancestry individuals	8q21.2	NR	rs184880542-T	0.02	4E-6		4.62	[NR] z score increase	Illumina [9009554] (imputed)	N
1243	chr8	86302695	86302696	rs2453868	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	8q21.2	CA1	rs2453868-T	0.5815625	2E-9	(CA1, 4969_2_1)	0.14746542	[0.099-0.196] unit decrease	Illumina [> 1000000] (imputed)	N
1243	chr8	86305197	86305198	rs1472360	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin concentration	172,851 European ancestry individuals	NA	8q21.2	CA3	rs1472360-C	0.5906	4E-9		0.02060446	[0.014-0.027] unit increase	Affymetrix [~ 2500000] (imputed)	N
1243	chr8	86307248	86307249	rs1390712	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	8q21.2	CA3	rs1390712-G	0.554305	6E-19		0.020112451	[0.016-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1243	chr8	86307462	86307463	rs7000950	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CA1	5,365 Icelandic ancestry individuals	NA	8q21.2		rs7000950-T	0.4289	8E-16		0.152627	[0.12-0.19] unit increase	Illumina [7506463] (imputed)	N
1243	chr8	86351050	86351051	rs2072696	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	8q21.2	CA3	rs2072696-C	0.238	7E-14	(Carbonic anhydrase 3, CA3.3799.11.2)	0.22	[0.16-0.28] unit decrease	Affymetrix [10572788] (imputed)	N
1243	chr8	86361081	86361082	rs4566	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	8q21.2	CA3	rs4566-T	0.612	1E-11		0.002	[0.0012-0.0028] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
1244	chr8	86391580	86391581	rs10504813	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	8q21.2	CA3	rs10504813-C	0.7675	2E-8	(CA3, 3799_11_2)	0.15098883	[0.099-0.203] unit increase	Illumina [> 1000000] (imputed)	N
1244	chr8	86394591	86394592	rs10088136	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	8q21.2		rs10088136-?	NR	9E-13				NR [~ 8900000] (imputed)	N
1247	chr8	86854331	86854332	rs1110275	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	8q21.2		rs1110275-T	0.90582	4E-8		0.02	[0.012-0.028] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
1248	chr8	86993193	86993194	rs183739760	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	8q21.3	REXO1L1, PSKH2	rs183739760-T	NR	5E-6		1.14516	[0.65-1.64] unit decrease	Illumina [at least 950000] (imputed)	N
1248	chr8	87025012	87025013	rs285406	22379998	McCormack M	2012-03-01	Pharmacogenomics	Genome-wide mapping for clinically relevant predictors of lamotrigine- and phenytoin-induced hypersensitivity reactions.	Adverse response to lamotrigine and phenytoin	34 European ancestry lamotrigine-induced hypersensitivity cases, 42 European ancestry phenytoin-induced hypersensitivity cases, 1,296 European ancestry controls	NA	8q21.3	ATP6V0D2	rs285406-?	NR	5E-6	(LTG)			Illumina [NR]	N
1249	chr8	87060671	87060672	rs3802225	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	8q21.3	NR	rs3802225-G	0.368464	8E-11		0.012446	[0.0087-0.0162] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1249	chr8	87060671	87060672	rs3802225	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	8q21.3	NR	rs3802225-G	0.36864	5E-13		0.014413	[0.011-0.018] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
1249	chr8	87062010	87062018	rs147659883	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	8q21.3	ATP6V0D2, PSKH2	rs147659883-A	0.364957	6E-10		0.014266816	[0.0097-0.0188] unit decrease	Affymetrix [93095623] (imputed)	N
1249	chr8	87064661	87064662	rs10086956	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	8q21.3	NR	rs10086956-?	NR	3E-32				Affymetrix [NR]	N
1249	chr8	87073676	87073677	rs12156243	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q21.3	NR	rs12156243-T	0.379026	1E-10				Affymetrix, Illumina [23114412] (imputed)	N
1249	chr8	87126758	87126759	rs183497284	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	8q21.3	NR	rs183497284-?	NR	7E-6	(EA)	1.3425	[0.77-1.92] unit increase	Illumina [up to 11892802] (imputed)	N
1249	chr8	87134082	87134083	rs117509142	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-7 levels	3,409 Finnish ancestry individuals	NA	8q21.3	NR	rs117509142-C		2E-6		0.327	[0.19-0.46] SD units increase	NR [10700000] (imputed)	N
1249	chr8	87147764	87147765	rs11775865	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	8q21.3		rs11775865-G	NR	4E-8		0.0173	[0.011-0.023] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
1249	chr8	87158576	87158577	rs11781321	31393916	Andaleon A	2019-08-08	PLoS One	Genetically regulated gene expression underlies lipid traits in Hispanic cohorts.	Total cholesterol levels	11,103 Hispanic or Latin American ancestry individuals	NA	8q21.3	NR	rs11781321-?	NR	2E-16	(conditional)	0.156	[0.12-0.19] unit decrease (conditional)	Illumina [1770809] (imputed)	N
1249	chr8	87160416	87160417	rs10283072	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	8q21.3		rs10283072-C	NR	2E-9		0.0177	[0.012-0.023] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
1250	chr8	87164510	87164511	rs11780633	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	8q21.3		rs11780633-T	NR	4E-9		0.0196	[0.013-0.026] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
1250	chr8	87164510	87164511	rs11780633	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	8q21.3	Intergenic	rs11780633-T	0.1491	3E-8	(MTAG)	0.0178	[0.012-0.024] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1250	chr8	87169048	87169049	rs10808536	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	8q21.3		rs10808536-?	NR	1E-14				NR [~ 8900000] (imputed)	N
1250	chr8	87170912	87170913	rs80037907	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	8q21.3	Intergenic	rs80037907-T	0.1547	4E-9	(MTAG)	0.0134	[0.0089-0.0179] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1250	chr8	87170912	87170913	rs80037907	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	8q21.3		rs80037907-T	0.1589	2E-8		0.0107	[0.007-0.0144] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1250	chr8	87170912	87170913	rs80037907	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	8q21.3	Intergenic	rs80037907-T	0.1589	6E-10	(MTAG)	0.0111	[0.0076-0.0146] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1250	chr8	87181394	87181395	rs144188464	31393916	Andaleon A	2019-08-08	PLoS One	Genetically regulated gene expression underlies lipid traits in Hispanic cohorts.	Total cholesterol levels	11,103 Hispanic or Latin American ancestry individuals	NA	8q21.3	NR	rs144188464-?	NR	1E-88	(conditional)	0.759	[0.68-0.83] unit decrease (conditional)	Illumina [1770809] (imputed)	N
1250	chr8	87204943	87204944	rs4571715	31393916	Andaleon A	2019-08-08	PLoS One	Genetically regulated gene expression underlies lipid traits in Hispanic cohorts.	Total cholesterol levels	11,103 Hispanic or Latin American ancestry individuals	NA	8q21.3	NR	rs4571715-?	NR	3E-80	(conditional)	0.679	[0.61-0.75] unit increase (conditional)	Illumina [1770809] (imputed)	N
1250	chr8	87234730	87234731	rs2976191	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	8q21.3	NR	rs2976191-?	NR	6E-6		4.517	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1250	chr8	87244581	87244582	rs13263353	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	8q21.3	NR	rs13263353-A	NR	2E-9		0.0166	[0.011-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
1250	chr8	87247208	87247209	rs10086569	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	8q21.3	SLC7A13	rs10086569-T	0.2392	7E-14		0.0028	[0.002-0.0036] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
1250	chr8	87269535	87269536	rs12681287	28927378	Qian DC	2017-09-19	BMC Genomics	Genome-wide imaging association study implicates functional activity and glial homeostasis of the caudate in smoking addiction.	Caudate activity during reward	106 individuals	NA	8q21.3	NR	rs12681287-A	0.364432	1E-6		0.6621911	[0.41-0.91] unit increase	Illumina [at least 621854] (imputed)	N
1250	chr8	87277574	87277575	rs4425734	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	8q21.3	Intergenic	rs4425734-A	0.5606	2E-11	(MTAG)	0.0112	[0.0079-0.0145] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1251	chr8	87300774	87300775	rs17680712	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	8q21.3		rs17680712-T	0.4369	9E-11		0.0092	[0.0065-0.0119] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1251	chr8	87300774	87300775	rs17680712	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	8q21.3	Intergenic	rs17680712-T	0.4369	2E-12	(MTAG)	0.0093	[0.0068-0.0118] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1251	chr8	87332551	87332552	rs2976178	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	8q21.3	WWP1	rs2976178-C	0.6717	2E-16		0.0025	[0.0019-0.0031] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
1251	chr8	87340869	87340870	rs2953511	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	8q21.3		rs2953511-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1251	chr8	87344469	87344470	rs2976181	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	8q21.3		rs2976181-T	NR	8E-16		0.014	[0.011-0.017] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
1251	chr8	87346565	87346566	rs117950919	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8q21.3	NR	rs117950919-G	0.01394	9E-9	(TNC)	0.062	NR unit increase	Illumina [1671387] (imputed)	N
1251	chr8	87346565	87346566	rs117950919	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8q21.3	NR	rs117950919-G	0.01394	5E-11	(VIM)	1.553	NR unit increase	Illumina [1671387] (imputed)	N
1252	chr8	87476438	87476439	rs7822494	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	8q21.3	NR	rs7822494-C	0.4478	7E-11		0.016236845	[0.011-0.021] unit decrease	Affymetrix [10549349] (imputed)	N
1252	chr8	87481299	87481300	rs1142528	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	8q21.3		rs1142528-T	0.5557	3E-9	(conditional-joint)	0.0084	[0.0057-0.0111] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1252	chr8	87503131	87503132	rs7817738	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	8q21.3		rs7817738-A	NR	2E-11		0.0128	[0.0091-0.0165] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1252	chr8	87505750	87505751	rs7459897	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	8q21.3	RMDN1	rs7459897-C	0.5153125	5E-313	(RMDN1, 7096_30_3)	0.8313499	[0.79-0.87] unit decrease	Illumina [> 1000000] (imputed)	N
1252	chr8	87505967	87505968	rs12546331	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	8q21.3	NA	rs12546331-T	0.508	2E-10		0.0108	[0.0075-0.0141] unit increase	NR [~ 27400000] (imputed)	N
1252	chr8	87515624	87515625	rs60694690	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	8q21.3	NR	rs60694690-T	0.2349	2E-10				NR [9056863] (imputed)	N
1252	chr8	87517200	87517201	rs7463186	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	8q21.3	NR	rs7463186-?	NR	3E-10				Affymetrix [~ 8270000] (imputed)	N
1252	chr8	87517200	87517201	rs7463186	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	8q21.3		rs7463186-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1252	chr8	87526191	87526192	rs7015263	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	8q21.3	CPNE3, RMDN1	rs7015263-A	NR	2E-8		0.017179212	[0.011-0.023] unit decrease	Affymetrix [NR]	N
1252	chr8	87529296	87529297	rs11781016	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	8q21.3	Intergenic	rs11781016-A	0.5151	5E-10	(MTAG)	0.0142	[0.0097-0.0187] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1252	chr8	87529296	87529297	rs11781016	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	8q21.3	RMDN1	rs11781016-C	0.489	8E-39	(Regulator of microtubule dynamics protein 1, RMDN1.7096.30.3)	0.32	[0.28-0.36] unit increase	Affymetrix [10572788] (imputed)	N
1252	chr8	87529296	87529297	rs11781016	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	8q21.3	NR	rs11781016-?	NR	6E-6		4.516	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1252	chr8	87537271	87537272	rs6651270	33106475	Li QS	2020-10-26	Transl Psychiatry	Genome-wide association studies of antidepressant class response and treatment-resistant depression.	Response to norepinephrine-dopamine reuptake inhibitors (responders vs non-responders)	3,971 European ancestry responders, 3,512 European ancestry non-responders	NA	8q21.3	NR	rs6651270-G	NR	3E-6		1.2361	NR	Illumina [at least 560000] (imputed)	N
1252	chr8	87543843	87543844	rs79225353	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	8q21.3	NR	rs79225353-?	NR	4E-6		10665.985	NR unit decrease	Illumina [2379855]	N
1252	chr8	87544173	87544174	rs10087788	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	8q21.3	NR	rs10087788-A	NR	1E-10		0.0178	[0.012-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
1252	chr8	87544173	87544174	rs10087788	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	8q21.3	NR	rs10087788-A	NR	5E-11		0.0182	[0.013-0.024] unit increase	Affymetrix [9000000] (imputed)	N
1253	chr8	87566157	87566158	rs11782610	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	8q21.3		rs11782610-?	NR	1E-11				NR [~ 8900000] (imputed)	N
1253	chr8	87595589	87595590	rs62512472	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Varicose veins	22,037 European ancestry cases, 437,665 European ancestry controls, 474 East Asian ancestry cases, 178,252 East Asian ancestry controls	NA	8q21.3		rs62512472-A	NR	6E-11		0.071	[0.05-0.092] unit increase	Affymetrix, Illumina [25842955] (imputed)	N
1253	chr8	87595589	87595590	rs62512472	30566020	Fukaya E	2018-12-01	Circulation	Clinical and Genetic Determinants of Varicose Veins.	Varicose veins	9,577 British ancestry cases, 327,959 British ancestry controls	NA	8q21.3	NR	rs62512472-A	0.43	1E-8		0.084	[0.055-0.113] unit increase	Affymetrix [10972371] (imputed)	N
1253	chr8	87643740	87643741	rs16916239	31116379	Meier SM	2019-05-22	JAMA Psychiatry	Genetic Variants Associated With Anxiety and Stress-Related Disorders: A Genome-Wide Association Study and Mouse-Model Study.	Anxiety and stress-related disorders	12,655 European ancestry cases, 19,225 European ancestry controls	NA	8q21.3	CNGB3	rs16916239-G	NR	9E-7		1.1074197	[1.06-1.15]	Illumina [8933939] (imputed)	N
1253	chr8	87673710	87673711	rs13268738	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	8q21.3	CNGB3	rs13268738-?		1E-14				Affymetrix, Illumina [NR] (imputed)	N
1253	chr8	87679776	87679777	rs28451864	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	8q21.3	Intergenic	rs28451864-A	0.5549	2E-10	(MTAG)	0.0105	[0.0072-0.0138] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1253	chr8	87686020	87686020	rs11382985	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	8q21.3	CNGB3	rs11382985-A	0.173908	2E-11		0.0182359	[0.013-0.024] unit decrease	NR [16516521] (imputed)	N
1254	chr8	87694904	87694905	rs7842410	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	8q21.3	Intergenic	rs7842410-A	0.5227	5E-8	(MTAG)	0.0125	[0.008-0.017] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1254	chr8	87721348	87721349	rs7814749	25089948	Theusch E	2014-10-01	Pharmacogenet Genomics	Ancestry and other genetic associations with plasma PCSK9 response to simvastatin.	Response to simvastatin treatment (PCSK9 protein level change)	562 European ancestry individuals	287 African American individuals	8q21.3	CNGB3	rs7814749-A	0.371	5E-6	(EA)	0.0913	[NR] unit decrease	Illumina [570422]	N
1254	chr8	87762606	87762607	rs11778219	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	8q21.3	NR	rs11778219-?	NR	9E-9				Affymetrix [~ 8270000] (imputed)	N
1254	chr8	87769960	87769961	rs4320563	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	8q21.3		rs4320563-A	0.5093	2E-14		0.0109	[0.0082-0.0136] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1254	chr8	87769960	87769961	rs4320563	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	8q21.3	Intergenic	rs4320563-A	0.5093	2E-15	(MTAG)	0.0105	[0.008-0.013] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1254	chr8	87776286	87776287	rs1982564	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	8q21.3		rs1982564-T	0.5606	1E-12	(conditional-joint)	0.01	[0.0073-0.0127] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1254	chr8	87779602	87779603	rs17619860	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		8q21.3	CNGB3	rs17619860-T	0.836864	2E-8		0.0104045	[0.0068-0.0141] unit decrease	Affymetrix [12370749]	N
1255	chr8	87879042	87879043	rs2453452	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	8q21.3	CNBD1, CNGB3, GOLGA2P1	rs2453452-A	NR	6E-6	(sleep duration, weekdays)	0.3612	[0.21-0.52] unit increase	Affymetrix [7141204] (imputed)	N
1255	chr8	87883037	87883038	rs2453441	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	8q21.3	Intergenic	rs2453441-A	0.6415	4E-9	(MTAG)	0.0081	[0.0054-0.0108] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1255	chr8	87947031	87947032	rs7841043	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	8q21.3		rs7841043-?	NR	1E-7				NR [~ 8900000] (imputed)	N
1256	chr8	88055464	88055465	rs4596672	28800603	Arpawong TE	2017-08-11	PLoS One	Genetic variants specific to aging-related verbal memory: Insights from GWASs in a population-based cohort.	Verbal memory performance (residualized delayed recall change)	7,486 European ancestry individuals aged 50 years or older	6,898 European ancestry individuals aged 50 years or older	8q21.3	NR	rs4596672-G	NR	5E-6			unit decrease	Illumina [at least 1198956] (imputed)	N
1256	chr8	88075042	88075043	rs2974279	28800603	Arpawong TE	2017-08-11	PLoS One	Genetic variants specific to aging-related verbal memory: Insights from GWASs in a population-based cohort.	Verbal memory performance (residualized delayed recall change)	7,486 European ancestry individuals aged 50 years or older	6,898 European ancestry individuals aged 50 years or older	8q21.3	NR	rs2974279-A	NR	2E-6			unit decrease	Illumina [at least 1198956] (imputed)	N
1259	chr8	88411744	88411745	rs10955278	30631343	Rolfe S	2018-12-18	Front Genet	Associations Between Genetic Data and Quantitative Assessment of Normal Facial Asymmetry.	Normal facial asymmetry (deformation magnitude)	3,186 European ancestry individuals	NA	8q21.3	CNBD1	rs10955278-?	NR	4E-6				Illumina [747780]	N
1259	chr8	88413970	88413971	rs3923931	32279069	Rovira P	2020-04-12	Neuropsychopharmacology	Shared genetic background between children and adults with attention deficit/hyperactivity disorder.	Attention deficit hyperactivity disorder (persistent)	6,532 European ancestry cases, 15,874 European ancestry controls	NA	8q21.3	NR	rs3923931-A	0.11	2E-7		1.2	[1.12-1.28]	Illumina [~ 1113287] (imputed)	N
1260	chr8	88484376	88484377	rs443440	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	8q21.3	NR	rs443440-G	0.488	1E-10		0.00692958	[0.0048-0.009] unit decrease	NR [9732723] (imputed)	N
1260	chr8	88534662	88534663	rs421935	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	8q21.3		rs421935-T	NR	4E-8		0.009	[0.0059-0.0121] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1260	chr8	88547779	88547780	rs10504835	34304350	Lim WY	2021-07-25	Genes Genomics	Identification of genetic variants for blood insulin level in sex-stratified Korean population and evaluation of the causal relationship between blood insulin level and polycystic ovary syndrome.	Insulin levels	4,182 Korean ancestry male	NA	8q21.3		rs10504835-G	0.15	8E-7		0.68	unit increase	Affymetrix [NR] (imputed)	N
1260	chr8	88597075	88597076	rs9642796	31763980	Xiong Z	2019-11-25	Elife	Novel genetic loci affecting facial shape variation in humans.	Facial morphology	10,115 European ancestry individuals	NA	8q21.3	DCAF4L2	rs9642796-A	NR	5E-8	(left alare-labiale superius distance)	0.115	NR unit decrease	Illumina [7029494] (imputed)	N
1261	chr8	88635941	88635942	rs10093384	32492107	Huang XF	2020-06-01	Invest Ophthalmol Vis Sci	Genomewide Association Study of Acute Anterior Uveitis Identifies New Susceptibility Loci.	Acute anterior uveitis in ankylosing spondylitis	2,752 European ancestry cases, 3,836 European ancestry controls	NA	8q21.3	intergenic	rs10093384-A	NR	7E-6		1.2	[1.11-1.31]	Illumina [7436415] (imputed)	N
1261	chr8	88702514	88702515	rs77880243	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	8q21.3	CNBD1	rs77880243-G	0.00960451872830445	2E-6	(G_Coprococcus_HB)	1.51074	[0.89-2.14] unit decrease	Illumina [7711310] (imputed)	N
1262	chr8	88746845	88746846	rs9969524	25631615	Springelkamp H	2015-01-28	Genet Epidemiol	Meta-analysis of Genome-Wide Association Studies Identifies Novel Loci Associated With Optic Disc Morphology.	Optic disc area	15,117 European ancestry individuals, 2,131 Erasmus Rucphen Family individuals	2,405 Chinese ancestry individuals, 2,305 Malay ancestry individuals, 2,131 Indian ancestry individuals	8q21.3	DCAF4L2	rs9969524-T	0.46	2E-8	(EA)	0.03	[0.020-0.040] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1262	chr8	88746845	88746846	rs9969524	25631615	Springelkamp H	2015-01-28	Genet Epidemiol	Meta-analysis of Genome-Wide Association Studies Identifies Novel Loci Associated With Optic Disc Morphology.	Optic disc area	15,117 European ancestry individuals, 2,131 Erasmus Rucphen Family individuals	2,405 Chinese ancestry individuals, 2,305 Malay ancestry individuals, 2,131 Indian ancestry individuals	8q21.3	DCAF4L2	rs9969524-T	0.46	2E-8		0.03	[0.020-0.040] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1262	chr8	88746872	88746873	rs1396036	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	8q21.3	NR	rs1396036-G	0.4779	1E-11				NR [9056863] (imputed)	N
1262	chr8	88761222	88761223	rs12547416	31809533	Han X	2019-09-06	Hum Mol Genet	Genome-wide association analysis of 95 549 individuals identifies novel loci and genes influencing optic disc morphology.	Optic disc size	67,040 British ancestry individuals	28,509 European ancestry individuals	8q21.3	DCAF4L2	rs12547416-T	0.51	5E-14		0.01	unit decrease	Affymetrix [8928767] (imputed)	N
1262	chr8	88763922	88763923	rs7844015	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	8q21.3		rs7844015-A	0.49	1E-10		6.45	z score increase	Affymetrix [9061022] (imputed)	N
1262	chr8	88763922	88763923	rs7844015	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	8q21.3	NR	rs7844015-A	0.4761	1E-16				NR [9056863] (imputed)	N
1262	chr8	88764416	88764417	rs7826072	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 86)	19,670 European ancestry individuals	NA	8q21.3		rs7826072-?	NR	4E-11				NR [9705931] (imputed)	N
1262	chr8	88764858	88764859	rs16872301	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	8q21.3		rs16872301-T	0.49	1E-23		10.04	z score increase	Affymetrix [9061022] (imputed)	N
1262	chr8	88764858	88764859	rs16872301	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	8q21.3		rs16872301-T	0.49	1E-12		7.11	z score increase	Affymetrix [9061022] (imputed)	N
1262	chr8	88782175	88782176	rs10955403	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Optic disc area	24,509 European ancestry individuals	NA	8q21.3	DCAF4L2	rs10955403-C	0.466	2E-8		0.022	[0.014-0.03] mm2 increase	Affymetrix, Illumina [11764957] (imputed)	N
1262	chr8	88823958	88823959	rs78642028	28468790	Agopian AJ	2017-06-01	Circ Cardiovasc Genet	Genome-Wide Association Studies and Meta-Analyses for Congenital Heart Defects.	Congenital heart disease (maternal effect)	1,119 European ancestry trios	NA	8q21.3	intergenic	rs78642028-?	NR	2E-6		1.656935	[1.346536-2.038886]	Illumina [at least 4756722] (imputed)	N
1262	chr8	88858685	88858686	rs536316182	32963334	Wei XT	2020-09-22	Eur J Hum Genet	Pleiotropic genomic variants at 17q21.31 associated with bone mineral density and body fat mass: a bivariate genome-wide association analysis.	Hip bone mineral density and total body fat mass (bivariate analysis)	10,070 European ancestry individuals, 1,623 Han Chinese ancestry individuals, 843 African American individuals, 445 Hispanic individuals	NA	8q21.3	DCAF4L2	rs536316182-?		6E-12				Affymetrix, Illumina [2374420] (imputed)	N
1262	chr8	88858685	88858686	rs536316182	32963334	Wei XT	2020-09-22	Eur J Hum Genet	Pleiotropic genomic variants at 17q21.31 associated with bone mineral density and body fat mass: a bivariate genome-wide association analysis.	Bone mineral density (hip)	10,070 European ancestry individuals, 1,623 Han Chinese ancestry individuals, 843 African American individuals, 445 Hispanic individuals	NA	8q21.3	NR	rs536316182-?		2E-11		0.64	[0.62-0.66] unit increase	Affymetrix, Illumina [2374420] (imputed)	N
1263	chr8	88868339	88868340	rs12543318	33898419	Mukhopadhyay N	2021-04-09	Front Cell Dev Biol	Genome-Wide Association Study of Non-syndromic Orofacial Clefts in a Multiethnic Sample of Families and Controls Identifies Novel Regions.	Nonsyndromic cleft lip with or without cleft palate	154 African ancestry cases, 274 African ancestry controls, 445 Asian ancestry cases, 1,246 Asian ancestry controls, 569 European ancestry cases, 2,704 European ancestry controls, 1,050 Central and South American cases, 2,988 Central and South American controls, 3 cases, 14 controls	NA	8q21.3	DCAF4L2	rs12543318-C	NR	1E-6				Illumina [NR] (imputed)	N
1263	chr8	88868339	88868340	rs12543318	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Unilateral cleft lip and palate	205 Asian ancestry cases, 315 European ancestry cases, 692 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	8q21.3	NR	rs12543318-?	NR	6E-8		1.41	[1.34-1.49]	Illumina [539000] (imputed)	N
1263	chr8	88868339	88868340	rs12543318	33137956	Yang Y	2020-10-29	Genes (Basel)	Secondary Genome-Wide Association Study Using Novel Analytical Strategies Disentangle Genetic Components of Cleft Lip and/or Cleft Palate in 1q32.2.	Orofacial clefts	160 African ancestry cases, 584 Asian ancestry cases, 1,068 European ancestry cases, 37 Native American ancestry cases, 849 admixed ancestry cases, 5 cases, 219 African ancestry controls, 1,433 Asian ancestry controls, 3,563 European ancestry controls, 152 Native American ancestry controls, 2,420 admixed ancestry controls, 52 controls	NA	8q21.3	NR	rs12543318-?	NR	5E-7	(conditional on rs72728755, rs7552, rs2235370, rs16957821 and rs12600562)	0.03	[0.018-0.042] unit decrease	Illumina [at least 589945] (imputed)	N
1263	chr8	88868339	88868340	rs12543318	32373937	Dardani C	2020-05-06	Int J Epidemiol	Cleft lip/palate and educational attainment: cause, consequence or correlation? A Mendelian-randomization study.	Cleft lip with or without cleft palate	1,692 European ancestry cases, 4,259 European ancestry controls	NA	8q21.3	NR	rs12543318-?	NR	5E-11		0.3197	[0.22-0.42] unit decrease	NR [7618724] (imputed)	N
1263	chr8	88868339	88868340	rs12543318	28232668	Yu Y	2017-02-24	Nat Commun	Genome-wide analyses of non-syndromic cleft lip with palate identify 14 novel loci and genetic heterogeneity.	Nonsyndromic cleft lip with cleft palate	2,033 Han Chinese ancestry cases, 4,051 Han Chinese ancestry controls	1,346 Han Chinese ancestry cases, 4,542 Han Chinese ancestry controls	8q21.3	DCAF4L2	rs12543318-C	0.62	9E-12		1.2345679	[NR]	Illumina [803202]	N
1263	chr8	88868339	88868340	rs12543318	28054174	Leslie EJ	2017-01-04	Hum Genet	Genome-wide meta-analyses of nonsyndromic orofacial clefts identify novel associations between FOXE1 and all orofacial clefts, and TP63 and cleft lip with or without cleft palate.	Orofacial clefts	83 Asian ancestry cases, 1,445 Asian ancestry case-parent trios, 161 Asian ancestry controls, 208 European ancestry cases, 1,284 European ancestry case-parent trios, 835 European ancestry controls, 610 Latino or African cases, 663 Latino or African case-parent trios, 704 Latino or African controls, 35 case-parent trios.	NA	8q21.3	intergenic	rs12543318-?	NR	1E-7	(EA)	1.34	[1.21-1.48]	Illumina [6090031] (imputed)	N
1263	chr8	88868339	88868340	rs12543318	28054174	Leslie EJ	2017-01-04	Hum Genet	Genome-wide meta-analyses of nonsyndromic orofacial clefts identify novel associations between FOXE1 and all orofacial clefts, and TP63 and cleft lip with or without cleft palate.	Orofacial clefts	83 Asian ancestry cases, 1,445 Asian ancestry case-parent trios, 161 Asian ancestry controls, 208 European ancestry cases, 1,284 European ancestry case-parent trios, 835 European ancestry controls, 610 Latino or African cases, 663 Latino or African case-parent trios, 704 Latino or African controls, 35 case-parent trios.	NA	8q21.3	DCAF4L2	rs12543318-?	NR	8E-11		1.26	[1.15-1.38] (GENEVA cohort)	Illumina [6090031] (imputed)	N
1263	chr8	88868339	88868340	rs12543318	28054174	Leslie EJ	2017-01-04	Hum Genet	Genome-wide meta-analyses of nonsyndromic orofacial clefts identify novel associations between FOXE1 and all orofacial clefts, and TP63 and cleft lip with or without cleft palate.	Cleft lip with or without cleft palate	83 Asian ancestry cases, 1,173 Asian ancestry case-parent trios, 161 Asian ancestry controls,170 European ancestry cases, 988 European ancestry case-parent trios, 835 European ancestry controls, 570 Latino or African cases, 629 Latino or African case-parent trios, 704 Latino or African controls, 21 case-parent trios.	NA	8q21.3	DCAF4L2	rs12543318-?	NR	9E-12		1.3	[1.17-1.45] (GENEVA cohort)	Illumina [6090031] (imputed)	N
1263	chr8	88868339	88868340	rs12543318	28054174	Leslie EJ	2017-01-04	Hum Genet	Genome-wide meta-analyses of nonsyndromic orofacial clefts identify novel associations between FOXE1 and all orofacial clefts, and TP63 and cleft lip with or without cleft palate.	Cleft lip with or without cleft palate	83 Asian ancestry cases, 1,173 Asian ancestry case-parent trios, 161 Asian ancestry controls,170 European ancestry cases, 988 European ancestry case-parent trios, 835 European ancestry controls, 570 Latino or African cases, 629 Latino or African case-parent trios, 704 Latino or African controls, 21 case-parent trios.	NA	8q21.3	DCAF4L2	rs12543318-?	NR	2E-8	(EA)	1.41	[1.26-1.58]	Illumina [6090031] (imputed)	N
1263	chr8	88868339	88868340	rs12543318	22863734	Ludwig KU	2012-08-05	Nat Genet	Genome-wide meta-analyses of nonsyndromic cleft lip with or without cleft palate identify six new risk loci.	Orofacial clefts	Up to 666 European ancestry trios, 399 European ancestry cases, 1,318 European ancestry controls	up to 795 East Asian ancestry trios	8q21.3	NR	rs12543318-C	NR	2E-8	(Meta-All, NSCL/P)	1.272	[1.106-1.463]	NR [497084]	N
1264	chr8	89114649	89114650	rs28906671	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	8q21.3	NR	rs28906671-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
1264	chr8	89119304	89119305	rs10089111	31005965	Coltell O	2019-04-21	Am J Clin Nutr	Association between taste perception and adiposity in overweight or obese older subjects with metabolic syndrome and identification of novel taste-related genes.	Sweet taste perception in obesity with metabolic syndrome	378 individuals	NA	8q21.3	MMP16	rs10089111-T	0.438	8E-6		0.417	[0.24-0.6] unit decrease	Illumina [622468]	N
1264	chr8	89119391	89119392	rs556450158	28084903	Hallberg P	2017-01-13	Pharmacogenomics	Genetic variants associated with angiotensin-converting enzyme inhibitor-induced cough: a genome-wide association study in a Swedish population.	Cough in response to angiotensin-converting enzyme inhibitor drugs	123 European ancestry cases, 1,345 European and unknown ancestry controls, 1 Middle Eastern ancestry case	NR	8q21.3	MMP16	rs556450158-?	NR	3E-6		10.07	[3.84-26.41]	Illumina [8600000] (imputed)	N
1264	chr8	89119419	89119420	rs2616517	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8q21.3	MMP16	rs2616517-G	NR	2E-8		0.0160683	[0.01-0.022] unit decrease	Affymetrix [321114] (imputed)	N
1264	chr8	89119419	89119420	rs2616517	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	8q21.3	MMP16	rs2616517-G	NR	1E-8		0.0163256	[0.011-0.022] unit decrease	Affymetrix [321169] (imputed)	N
1265	chr8	89156972	89156973	rs76381578	32724131	Li QS	2020-07-28	Sci Rep	Genome-wide association study and polygenic risk score analysis of esketamine treatment response.	Response to esketamine in treatment resistant depression	255 European ancestry individuals	NA	8q21.3	NR	rs76381578-?		2E-6		15.2371	[9.05-21.42] unit decrease	NR [NR] (imputed)	N
1265	chr8	89188453	89188454	rs6981717	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	8q21.3	NR	rs6981717-C	NR	9E-6		1.0526316	[NR]	Illumina [7158791] (imputed)	N
1265	chr8	89235785	89235786	rs12682181	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip and palate	121 Asian ancestry cases, 159 European ancestry cases, 285 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	8q21.3	NR	rs12682181-?	NR	2E-7		0.62	[0.58-0.67]	Illumina [539000] (imputed)	N
1266	chr8	89264750	89264751	rs7010876	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	8q21.3	MMP16	rs7010876-T	NR	7E-7	(EA)	1.0615711	[1.04-1.09]	Illumina [6627481] (imputed)	N
1266	chr8	89264750	89264751	rs7010876	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	8q21.3	MMP16	rs7010876-T	NR	3E-8		1.0638298	[1.04-1.09]	Illumina [6627481] (imputed)	N
1266	chr8	89264750	89264751	rs7010876	29483656	Pardinas AF	2018-02-26	Nat Genet	Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.	Schizophrenia	40,675 European ancestry cases, 64,643 European ancestry controls	1,651 European ancestry cases, 4,111 cases, 142,717 European ancestry controls, 11,507 controls	8q21.3	MMP16	rs7010876-?	NR	7E-9		1.064	[1.04-1.08]	Illumina [8000000] (imputed)	N
1266	chr8	89264750	89264751	rs7010876	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	8q21.3	MMP16	rs7010876-T	NR	1E-8		1.0649627	[1.04-1.09]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1266	chr8	89268542	89268543	rs6994019	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	8q21.3	NR	rs6994019-?	NR	4E-10		1.06833	[1.05-1.09]	Affymetrix, Illumina [12447948] (imputed)	N
1266	chr8	89294321	89294322	rs58605417	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	8q21.3	NR	rs58605417-G	NR	6E-7		1.0638298	[NR]	Illumina [7158791] (imputed)	N
1266	chr8	89295951	89295952	rs1519930	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	8q21.3	MMP16	rs1519930-T	NR	7E-12		0.0208525	[0.015-0.027] unit increase	Affymetrix [321169] (imputed)	N
1266	chr8	89312390	89312391	rs7816934	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	8q21.3	MMP16	rs7816934-?		1E-10				Affymetrix, Illumina [NR] (imputed)	N
1266	chr8	89334259	89334260	rs7837860	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs anorexia nervosa (ordinary least squares (OLS))	40,675 schizophrenia cases, 16,992 anorexia nervosa cases	NA	8q21.3		rs7837860-?	NR	3E-8		0.0182	NR unit increase	NR [4425810] (imputed)	N
1266	chr8	89334259	89334260	rs7837860	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	8q21.3	MMP16	rs7837860-?		5E-8		1.0638298	[1.04-1.09]	Affymetrix, Illumina [NR]	N
1266	chr8	89334909	89334910	rs35889496	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	8q21.3		rs35889496-?	NR	5E-12				NR [~ 8900000] (imputed)	N
1266	chr8	89334909	89334910	rs35889496	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	8q21.3		rs35889496-?	NR	3E-12		0.0151252	[0.011-0.02] unit decrease	Affymetrix [20259828] (imputed)	N
1266	chr8	89335646	89335647	rs7014590	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	8q21.3	MMP16	rs7014590-C	NR	1E-11		0.0219012	[0.016-0.028] unit increase	Affymetrix [319769] (imputed)	N
1266	chr8	89335646	89335647	rs7014590	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	8q21.3	MMP16	rs7014590-C	NR	6E-12		0.0222801	[0.016-0.029] unit increase	Affymetrix [319769] (imputed)	N
1266	chr8	89335646	89335647	rs7014590	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	8q21.3	MMP16	rs7014590-T	0.7386	4E-26		0.0228	[0.018-0.027] unit increase	Affymetrix [18391927] (imputed)	N
1266	chr8	89335646	89335647	rs7014590	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	8q21.3		rs7014590-?	NR	3E-15				NR [~ 8900000] (imputed)	N
1266	chr8	89369939	89369940	rs10481112	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	8q21.3	MMP16	rs10481112-C	0.301018	1E-16		0.0167703	[0.013-0.021] unit decrease	NR [13737936] (imputed)	N
1266	chr8	89373035	89373036	rs6989866	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	8q21.3	RP11-586K2.1	rs6989866-T	NR	2E-13		0.0240231	[0.018-0.03] unit increase	Affymetrix [321169] (imputed)	N
1266	chr8	89373326	89373327	rs36116061	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cerebral amyloid deposition (PET imaging)	up to 883 European and other ancestry individuals	NA	8q21.3	MMP16, RIPK2	rs36116061-T	0.44	7E-7		0.0619	[NR] unit increase	Illumina [~ 9000000] (imputed)	N
1266	chr8	89373915	89373916	rs6469372	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	8q21.3	RP11-586K2.1	rs6469372-A	NR	3E-8		0.0185327	[0.012-0.025] unit increase	Affymetrix [319769] (imputed)	N
1266	chr8	89373915	89373916	rs6469372	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	8q21.3	RP11-586K2.1	rs6469372-A	NR	1E-8		0.0189865	[0.012-0.026] unit increase	Affymetrix [319769] (imputed)	N
1266	chr8	89373915	89373916	rs6469372	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8q21.3	RP11-586K2.1	rs6469372-A	NR	4E-9		0.0198876	[0.013-0.026] unit increase	Affymetrix [321114] (imputed)	N
1266	chr8	89376303	89376304	rs17730333	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	8q21.3	MMP16	rs17730333-G	0.017000000000000015	4E-6		1.2032247		NR [9372253] (imputed)	N
1267	chr8	89394568	89394568	rs142094630	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8q21.3	RP11-586K2.1	rs142094630-T	NR	7E-13		0.0232213	[0.017-0.03] unit increase	Affymetrix [321114] (imputed)	N
1267	chr8	89394568	89394568	rs142094630	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	8q21.3	NR	rs142094630-TCCTC	0.730947	1E-13		0.0596351	[0.045-0.075] unit increase	Affymetrix [17914406] (imputed)	N
1267	chr8	89397636	89397637	rs2134964	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	8q21.3	NR	rs2134964-?	NR	2E-13				Affymetrix [~ 8270000] (imputed)	N
1267	chr8	89399199	89399200	rs12156301	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	8q21.3	NA	rs12156301-T		1E-10		0.0126067	[0.0088-0.0165] unit increase	Illumina [13288253] (imputed)	N
1267	chr8	89401082	89401083	rs11317857	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Angiopoietin-1 receptor levels	21,758 European ancestry individuals	9,173 individuals	8q21.3		rs11317857-A	0.69	3E-23		0.0965	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1267	chr8	89401301	89401302	rs4961095	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	8q21.3	RP11-586K2.1	rs4961095-G	NR	2E-8		0.0189986	[0.012-0.026] unit increase	Affymetrix [321169] (imputed)	N
1267	chr8	89435474	89435475	rs16882450	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	8q21.3	NR	rs16882450-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1267	chr8	89440841	89440842	rs34578339	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	8q21.3		rs34578339-A	0.843	3E-8		0.016	[0.01-0.022] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
1267	chr8	89448876	89448877	rs821100	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	8q21.3	NR	rs821100-?	NR	5E-13				Affymetrix [~ 8270000] (imputed)	N
1267	chr8	89459233	89459234	rs2129782	25387706	Vaidyanathan U	2014-12-01	Psychophysiology	Heritability and molecular genetic basis of electrodermal activity: a genome-wide association study.	Electrodermal activity	Up to 4,424 European ancestry twins and their parents	NA	8q21.3	intergenic	rs2129782-?	NR	5E-6	(SCR Amplitude)	0.042	[0.024-0.06] unit increase	Illumina [527829]	N
1267	chr8	89462320	89462321	rs1601817	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	8q21.3	NA	rs1601817-A	0.3114	2E-9		0.011	[0.0075-0.0145] unit decrease	NR [~ 27400000] (imputed)	N
1267	chr8	89476450	89476451	rs3110417	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Irritable mood	366,726 European ancestry individuals	NA	8q21.3	MMP16	rs3110417-T	0.251491	6E-9		5.81	z score decrease	NR [~ 10847151] (imputed)	N
1267	chr8	89497038	89497039	rs10094691	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	8q21.3	NR	rs10094691-T	0.711153	8E-11		0.0506328	[0.036-0.065] unit increase	Affymetrix [17914406] (imputed)	N
1267	chr8	89500662	89500663	rs821107	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	8q21.3	NR	rs821107-A	0.292	1E-12		0.0154	[0.011-0.02] unit increase	NR [~ 27400000] (imputed)	N
1268	chr8	89547931	89547932	rs10504861	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine without aura	7,107 European ancestry cases, 69,427 European ancestry controls	NA	8q21.3	MMP16	rs10504861-?	0.84	1E-8		1.16	[1.11-1.23]	Affymetrix, Illumina [~ 2300000] (imputed)	N
1268	chr8	89579648	89579649	rs16884419	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Irritable mood	366,726 European ancestry individuals	NA	8q21.3	NR	rs16884419-A	0.243454	1E-8		5.68	z score increase	NR [~ 10847151] (imputed)	N
1268	chr8	89581182	89581182	rs567718925	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	8q21.3	RP11-586K2.1	rs567718925-GA	NR	4E-9		0.0188425	[0.013-0.025] unit increase	Affymetrix [319769] (imputed)	N
1268	chr8	89581182	89581182	rs567718925	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	8q21.3	RP11-586K2.1	rs567718925-GA	NR	1E-9		0.0193248	[0.013-0.026] unit increase	Affymetrix [319769] (imputed)	N
1268	chr8	89581182	89581182	rs567718925	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	8q21.3	RP11-586K2.1	rs567718925-GA	NR	7E-10		0.0198364	[0.014-0.026] unit increase	Affymetrix [321169] (imputed)	N
1268	chr8	89585047	89585048	rs7838490	22417934	Athanasiu L	2012-03-12	Psychiatry Res	Genome-wide association study identifies genetic loci associated with body mass index and high density lipoprotein-cholesterol levels during psychopharmacological treatment - a cross-sectional naturalistic study.	Body mass index and cholesterol (psychopharmacological treatment)	283 European ancestry schizophrenia cases, 213 European ancestry bipolar disorder cases, 98 European ancestry psychosis cases	NA	8q21.3	MMP16	rs7838490-?	NR	6E-8	(BMI)		[NR]	Affymetrix [608239]	N
1268	chr8	89588625	89588626	rs7819570	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	67,764 individuals	NA	8q21.3	NR	rs7819570-?		3E-8				NR [8377093]	N
1268	chr8	89588625	89588626	rs7819570	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	65,967 individuals	NA	8q21.3	NR	rs7819570-?		3E-8				NR [8377093]	N
1268	chr8	89588625	89588626	rs7819570	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	8q21.3	MMP16	rs7819570-T		2E-8		1.07	[1.05-1.10]	Affymetrix, Illumina [NR]	N
1268	chr8	89588625	89588626	rs7819570	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	8q21.3	NR	rs7819570-T	NR	2E-8		1.08	[NR]	Illumina [7158791] (imputed)	N
1268	chr8	89588625	89588626	rs7819570	25056061	Ripke S	2014-07-22	Nature	Biological insights from 108 schizophrenia-associated genetic loci.	Schizophrenia	32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	1,513 European ancestry cases, 66,236 European ancestry controls	8q21.3	MMP16	rs7819570-T	0.174	1E-8		1.079	[1.051-1.108]	Affymetrix, Illumina [9005918] (imputed)	N
1268	chr8	89592082	89592083	rs11995572	23974872	Ripke S	2013-08-25	Nat Genet	Genome-wide association analysis identifies 13 new risk loci for schizophrenia.	Schizophrenia	5,001 European ancestry cases, 6,243 European ancestry controls, 8,832 cases, 12,067 controls	4,801 European ancestry cases, 4,741 European ancestry controls, 2,612 European and unknown ancestry cases, 15,021 European and unknown ancestry controls, 581 trios	8q21.3	MMP16	rs11995572-T	0.135	3E-8		1.12	[1.08-1.16]	Affymetrix, Illumina [9871789]	N
1268	chr8	89604286	89604287	rs7845305	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	8q21.3	NR	rs7845305-C	0.239172	2E-9		0.0497059	[0.034-0.065] unit decrease	Affymetrix [17914406] (imputed)	N
1268	chr8	89606887	89606888	rs35529952	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	8q21.3	RP11-586K2.1	rs35529952-T	NR	2E-8		0.0221232	[0.014-0.03] unit increase	Affymetrix [319769] (imputed)	N
1268	chr8	89608689	89608690	rs4269585	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8q21.3	RP11-586K2.1	rs4269585-C	NR	4E-9		0.0232043	[0.015-0.031] unit increase	Affymetrix [321114] (imputed)	N
1268	chr8	89608689	89608690	rs4269585	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	8q21.3	RP11-586K2.1	rs4269585-C	NR	9E-9		0.0226992	[0.015-0.03] unit increase	Affymetrix [321169] (imputed)	N
1268	chr8	89609650	89609651	rs4534168	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	8q21.3	RP11-586K2.1	rs4534168-G	NR	6E-9		0.0229294	[0.015-0.031] unit increase	Affymetrix [319769] (imputed)	N
1268	chr8	89637918	89637919	rs9297524	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	8q21.3		rs9297524-?	NR	6E-9				NR [~ 8900000] (imputed)	N
1268	chr8	89644430	89644431	rs6990941	31268507	Periyasamy S	2019-07-03	JAMA Psychiatry	Association of Schizophrenia Risk With Disordered Niacin Metabolism in an Indian Genome-wide Association Study.	Schizophrenia	816 Indian ancestry cases, 900 Indian ancestry controls, 505 Indian ancestry cases and 871 Indian ancestry controls from 405 families, up to 36,989 European and unknown ancestry cases, up to 113,075 European and unknown ancestry controls	NA	8q21.3	NR	rs6990941-?	NR	2E-8				Illumina [up to 5582932] (imputed)	N
1268	chr8	89644430	89644431	rs6990941	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	8q21.3	LOC10012910	rs6990941-C	NR	3E-7	(EA)	1.0752687	[1.05-1.1]	Illumina [6627481] (imputed)	N
1268	chr8	89649176	89649177	rs11995369	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Cooked vegetable consumption	335,576 European ancestry individuals	NA	8q21.3	intergenic	rs11995369-?	NR	4E-8		0.0167731	[0.011-0.023] unit decrease	Affymetrix [25921788] (imputed)	N
1269	chr8	89664363	89664364	rs10090456	30621171	Coltell O	2019-01-04	Nutrients	Genome-Wide Association Study (GWAS) on Bilirubin Concentrations in Subjects with Metabolic Syndrome: Sex-Specific GWAS Analysis and Gene-Diet Interactions in a Mediterranean Population.	Serum bilirubin levels in metabolic syndrome	188 European ancestry male individuals, 242 European ancestry female individuals	NA	8q21.3	intergenic	rs10090456-C	0.05	9E-6	(men)	0.434	[0.25-0.62] mg/dL increase	Illumina [622468]	N
1269	chr8	89677160	89677161	rs13257525	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	8q21.3	NR	rs13257525-?	NR	9E-6	(AA)	4.07	[3.34-4.8]	Illumina [905956]	N
1269	chr8	89686565	89686565	rs199935940	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8q21.3	RP11-586K2.1	rs199935940-AC	NR	3E-10		0.0200396	[0.014-0.026] unit increase	Affymetrix [321114] (imputed)	N
1269	chr8	89692243	89692244	rs5010008	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	8q21.3		rs5010008-T	NR	1E-8		0.0126	[0.0083-0.0169] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1269	chr8	89711076	89711077	rs41492347	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	8q21.3	NR	rs41492347-?	NR	4E-25				Affymetrix [NR]	N
1269	chr8	89755217	89755218	rs200552205	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	8q21.3	RP11-586K2.1	rs200552205-G	NR	4E-10		0.019679	[0.014-0.026] unit increase	Affymetrix [319769] (imputed)	N
1269	chr8	89755217	89755218	rs200552205	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	8q21.3	RP11-586K2.1	rs200552205-G	NR	2E-10		0.0200222	[0.014-0.026] unit increase	Affymetrix [319769] (imputed)	N
1269	chr8	89755217	89755218	rs200552205	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	8q21.3	RP11-586K2.1	rs200552205-G	NR	1E-9		0.0193978	[0.013-0.026] unit increase	Affymetrix [321169] (imputed)	N
1269	chr8	89760310	89760311	rs7004633	23453885	Smoller JW	2013-02-27	Lancet	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NA	8q21.3	MMP16	rs7004633-?	0.184	3E-8	(Modelling analysis)			NR [1252901] (imputed)	N
1269	chr8	89760310	89760311	rs7004633	22688191	Bergen SE	2012-06-12	Mol Psychiatry	Genome-wide association study in a Swedish population yields support for greater CNV and MHC involvement in schizophrenia compared with bipolar disorder.	Schizophrenia	2,111 European ancestry cases, 2,535 European ancestry controls	11,271 European ancestry cases, 14,601 European ancestry controls	8q21.3	MMP16	rs7004633-?	NR	6E-8		1.15	[NR]	Affymetrix [745006]	N
1269	chr8	89760310	89760311	rs7004633	21926974	Ripke S	2011-09-18	Nat Genet	Genome-wide association study identifies five new schizophrenia loci.	Schizophrenia	9,394 European ancestry cases, 12,462 European ancestry controls	8,442 European ancestry cases, 21,397 European ancestry controls	8q21.3	MMP16	rs7004633-A	0.18	2E-7		1.11	[1.07-1.15]	Affymetrix, Illumina [1252901] (imputed)	N
1270	chr8	89839431	89839432	rs189900952	34014839	Page GP	2021-05-20	J Clin Invest	Multi-ancestry genome-wide association study identifies 27 loci associated with measures of hemolysis following blood storage.	hemolysis of donated blood (cold-storage)	Up to 7,586 non-Hispanic White ancestry individuals, Up to 1,049 East Asian ancestry individuals, Up to 257 South Asian ancestry individuals, Up to 1,046 African Americans individuals, Up to 456 Mexican and Central American Hispanics individuals, Up to 489 Caribbean Island Hispanics, Up to 1,336 individuals	NA	8q21.3	NR	rs189900952-?	NR	2E-8		0.002	unit increase	NR [14100000] (imputed)	N
1270	chr8	89839431	89839432	rs189900952	34014839	Page GP	2021-05-20	J Clin Invest	Multi-ancestry genome-wide association study identifies 27 loci associated with measures of hemolysis following blood storage.	hemolysis of donated blood (cold-storage)	Up to 7,586 non-Hispanic White ancestry individuals	NA	8q21.3	NR	rs189900952-?	NR	5E-8				NR [14100000] (imputed)	N
1270	chr8	89852721	89852722	rs116826269	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8q21.3	NR	rs116826269-T	0.0122	1E-9	(CYP2E1)	0.6006	NR unit increase	Illumina [1671387] (imputed)	N
1271	chr8	89931695	89931696	rs766550465	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	8q21.3		rs766550465-G	5.15000000000043E-4	3E-12		0.3553213	[0.26-0.45] unit decrease	Affymetrix [93095623] (imputed)	N
1271	chr8	89993487	89993488	rs10429371	23470693	Zeng Z	2013-03-07	J Dent Res	Genome-wide association studies of pit-and-fissure- and smooth-surface caries in permanent dentition.	Smooth-surface caries	982 European ancestry individuals	NA	8q21.3	NR	rs10429371-C	.2142	3E-6		3.8	[NR] unit increase	Illumina [1200000] (imputed)	N
1271	chr8	90011527	90011528	rs17750193	30145303	Kimbrel NA	2018-07-17	Psychiatry Res	A genome-wide association study of suicide attempts and suicidal ideation in U.S. military veterans.	Suicidal ideation	79 European ancestry cases, 59 cases, 654 European ancestry controls, 779 controls	NA	8q21.3	Intergenic	rs17750193-C	NR	3E-6		3.26		Illumina [2711511] (imputed)	N
1272	chr8	90165038	90165039	rs143685090	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar I disorder	14,879 European ancestry cases, 31,358 European ancestry controls	NA	8q21.3	NR	rs143685090-C	0.009000000000000008	1E-6		1.56816	[NR]	NR [9372253] (imputed)	N
1273	chr8	90211099	90211100	rs2046315	23470693	Zeng Z	2013-03-07	J Dent Res	Genome-wide association studies of pit-and-fissure- and smooth-surface caries in permanent dentition.	Smooth-surface caries	982 European ancestry individuals	NA	8q21.3	intergenic	rs2046315-T	0.1322	8E-8		5.187	[NR] unit increase	Illumina [1200000] (imputed)	N
1273	chr8	90211099	90211100	rs2046315	23470693	Zeng Z	2013-03-07	J Dent Res	Genome-wide association studies of pit-and-fissure- and smooth-surface caries in permanent dentition.	Pit-and-Fissure caries	996 European ancestry individuals		8q21.3	intergenic	rs2046315-T	0.1322	7E-7		1.871	[NR] unit increase	Illumina [1200000] (imputed)	N
1273	chr8	90211099	90211100	rs2046315	23259602	Wang X	2012-12-21	BMC Oral Health	Genome-wide association scan of dental caries in the permanent dentition.	Dental caries	1,483 European ancestry comparatively younger individuals, 5,960 European ancestry comparatively older individuals	NA	8q21.3	LOC100129100	rs2046315-?	NR	3E-6	(Comparatively Younger)			Affymetrix, Illumina [~ 1400000] (imputed)	N
1274	chr8	90342185	90342186	rs4397449	20125193	Cirulli ET	2010-02-03	Eur J Hum Genet	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American individuals, up to 74 South Asian ancestry individuals	NA	8q21.3	RIPK2	rs4397449-?	NR	3E-6	(Animals)			Illumina [up to 563855]	N
1274	chr8	90350243	90350244	rs1947835	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Sub-cortical grey matter volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	8q21.3	NR	rs1947835-?		6E-7				Illumina [4322238] (imputed)	N
1274	chr8	90350243	90350244	rs1947835	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Putamen volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	8q21.3	NR	rs1947835-?		6E-6				Illumina [4322238] (imputed)	N
1274	chr8	90363203	90363204	rs7018458	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Ventral diencephalon volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	8q21.3	NR	rs7018458-?		7E-6				Illumina [4322238] (imputed)	N
1274	chr8	90372172	90372173	rs983898	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	8q21.3	Intergenic	rs983898-G	NR	4E-6	(men)	0.0226619	[0.013-0.032] unit decrease	Illumina [13520550] (imputed)	N
1274	chr8	90376167	90376168	rs140656846	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1b levels	8,243 Finnish ancestry individuals	NA	8q21.3	NR	rs140656846-G	NR	8E-6		0.2416	[0.14-0.35] SD units decrease	NR [10700000] (imputed)	N
1275	chr8	90505210	90505211	rs36116281	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	8q21.3	Intergenic	rs36116281-T	NR	5E-6	(men)	0.0423458	[0.024-0.061] unit decrease	Illumina [13520550] (imputed)	N
1276	chr8	90638304	90638305	rs150615	34642315	Ferreiro-Iglesias A	2021-10-12	Nat Commun	Germline determinants of humoral immune response to HPV-16 protect against oropharyngeal cancer.	Human papilloma virus 16 negative oropharyngeal cancer	565 European ancestry cases, 5,256 European ancestry controls	NA	8q21.3		rs150615-G	NR	3E-6		1.4		Illumina [7574753] (imputed)	N
1276	chr8	90656987	90656988	rs160441	20694014	Thye T	2010-08-08	Nat Genet	Genome-wide association analyses identifies a susceptibility locus for tuberculosis on chromosome 18q11.2.	Tuberculosis	2,237 Sub-Saharan African ancestry cases, 3,122 Sub-Saharan African ancestry controls	1,462 Sub-Saharan African ancestry cases, 4,604 Sub-Saharan African ancestry controls	8q21.3	NR	rs160441-T	0.41	8E-6		1.2	[1.10-1.30]	Affymetrix [> 333754] (imputed)	N
1276	chr8	90662940	90662941	rs160451	25642632	Liu H	2015-02-02	Nat Genet	Discovery of six new susceptibility loci and analysis of pleiotropic effects in leprosy.	Leprosy	1,548 Chinese ancestry cases, 2,150 Chinese ancestry controls, 4,362 Chinese ancestry controls with immune-related diseases	6,765 Chinese ancestry cases, 9,505 Chinese ancestry controls	8q21.3	RIPK2	rs160451-C	0.77	1E-21		1.2820514	[NR]	Illumina [4577171] (imputed)	N
1276	chr8	90683661	90683662	rs410394	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8q21.3	NR	rs410394-T	0.02613	3E-9	(LTF)	0.2239	NR unit increase	Illumina [1671387] (imputed)	N
1276	chr8	90683661	90683662	rs410394	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8q21.3	NR	rs410394-T	0.02613	1E-8	(TTN)	0.7645	NR unit increase	Illumina [1671387] (imputed)	N
1277	chr8	90778512	90778513	rs42490	20018961	Zhang FR	2009-12-16	N Engl J Med	Genomewide association study of leprosy.	Leprosy	706 Han Chinese ancestry cases, 1,225 Han Chinese ancestry controls	3,254 Chinese ancestry cases, 5,955 Chinese ancestry controls	8q21.3	RIPK2	rs42490-G	0.58	1E-16		1.32	[1.23-1.41]	Illumina [491883]	N
1277	chr8	90804327	90804328	rs383592	25642632	Liu H	2015-02-02	Nat Genet	Discovery of six new susceptibility loci and analysis of pleiotropic effects in leprosy.	Leprosy	1,548 Chinese ancestry cases, 2,150 Chinese ancestry controls, 4,362 Chinese ancestry controls with immune-related diseases	6,765 Chinese ancestry cases, 9,505 Chinese ancestry controls	8q21.3	RIPK2	rs383592-G	0.584	2E-35		1.32	[NR]	Illumina [4577171] (imputed)	N
1277	chr8	90806159	90806163	rs140898580	29855589	Chernus J	2018-05-31	Sci Rep	GWAS reveals loci associated with velopharyngeal dysfunction.	Velopharyngeal dysfunction	54 Hispanic or Latin American and unknown ancestry cases, 922 Hispanic or Latin American and unknown ancestry controls	NA	8q21.3	NR	rs140898580-?	NR	2E-6		0.087405	[NR] unit decrease	Illumina [at least 269494] (imputed)	N
1277	chr8	90818614	90818615	rs11989430	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	8q21.3		rs11989430-T	0.16019499999999998	1E-46		1.0883509	[1.08-1.1]	Affymetrix, Illumina [9851866] (imputed)	N
1277	chr8	90823686	90823687	rs40457	20018961	Zhang FR	2009-12-16	N Engl J Med	Genomewide association study of leprosy.	Leprosy	706 Han Chinese ancestry cases, 1,225 Han Chinese ancestry controls	3,254 Chinese ancestry cases, 5,955 Chinese ancestry controls	8q21.3	RIPK2	rs40457-A	0.28	1E-12		1.3	[1.20-1.39]	Illumina [491883]	N
1278	chr8	90849304	90849305	rs10094579	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	8q21.3	intergenic	rs10094579-?	NR	2E-10	(subset analysis)			Illumina [130052]	N
1278	chr8	90875917	90875918	rs7015630	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	8q21.3	NR	rs7015630-A	0.73	3E-8	(EA)	1.0647925		Affymetrix, Illumina [~ 9000000] (imputed)	N
1278	chr8	90875917	90875918	rs7015630	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	8q21.3	NR	rs7015630-A	0.73	9E-10	(EA)	1.0879005	[1.06-1.11]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1278	chr8	90875917	90875918	rs7015630	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Crohn's disease	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls	8q21.3	RIPK2	rs7015630-T	0.739	1E-8		1.075	[1.035-1.116]	Affymetrix, Illumina [1230000] (imputed)	N
1278	chr8	90883802	90883803	rs2091921	32239398	Liu L	2020-04-01	Hum Genet	Two novel pleiotropic loci associated with osteoporosis and abdominal obesity.	Trunk fat mass adjusted for trunk lean mass	10,208 European ancestry individuals, 445 Hispanic individuals, 843 African ancestry individuals, 1,539 East Asian individuals	NA	8q21.3	OSGIN2	rs2091921-T	NR	2E-10		0.2	NR unit decrease	Affymetrix, Illumina [12061510] (imputed)	N
1278	chr8	90883802	90883803	rs2091921	32239398	Liu L	2020-04-01	Hum Genet	Two novel pleiotropic loci associated with osteoporosis and abdominal obesity.	Femoral neck bone mineral density and trunk fat mass adjusted by trunk lean mass	10,208 European ancestry individuals, 445 Hispanic individuals, 843 African ancestry individuals, 1,539 East Asian individuals	NA	8q21.3	OSGIN2	rs2091921-T	NR	3E-9				Affymetrix, Illumina [12061510] (imputed)	N
1278	chr8	90883802	90883803	rs2091921	30944420	Liu L	2019-04-03	Int J Obes (Lond)	Identification of a 1p21 independent functional variant for abdominal obesity.	Trunk fat mass adjusted for trunk lean mass	8,736 European ancestry individuals, 1,541 East Asian ancestry individuals, 445 Hispanic ancestry individuals, 847 African-American ancestry individuals	NA	8q21.3		rs2091921-?	NR	3E-10				Affymetrix, Illumina [12061510] (imputed)	N
1278	chr8	90940204	90940205	rs2142141	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	NA	8q21.3	OSGIN2	rs2142141-G	0.4669	4E-9		0.1054	[0.07-0.14] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1279	chr8	90975300	90975301	rs34286018	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8q21.3	NR	rs34286018-C	0.0122	7E-9	(PSAP)	0.2327	NR unit increase	Illumina [1671387] (imputed)	N
1279	chr8	90975300	90975301	rs34286018	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8q21.3	NR	rs34286018-C	0.0122	3E-8	(GPNMB)	0.05339	NR unit increase	Illumina [1671387] (imputed)	N
1279	chr8	90983459	90983460	rs34767364	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Lymphocyte counts	443,762 European ancestry individuals	NA	8q21.3		rs34767364-?	NR	2E-16		0.133846	[0.1-0.17] unit increase	NR [9800000] (imputed)	N
1279	chr8	90995425	90995426	rs118026302	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	8q21.3	NBN	rs118026302-T	0.00356400000000001	7E-10		0.115243606	[0.079-0.152] unit increase	Affymetrix [93095623] (imputed)	N
1279	chr8	90995425	90995426	rs118026302	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	8q21.3	NBN	rs118026302-T	0.00356500000000004	3E-18		0.16275913	[0.13-0.2] unit increase	Affymetrix [93095623] (imputed)	N
1279	chr8	90995425	90995426	rs118026302	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q21.3	NR	rs118026302-C	0.996509	1E-15				Affymetrix, Illumina [23472807] (imputed)	N
1279	chr8	90995425	90995426	rs118026302	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	8q21.3	NR	rs118026302-C	0.996495	1E-18		0.144307	[0.11-0.18] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1279	chr8	91019046	91019047	rs1805807	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8q21.3	NR	rs1805807-T	0.4495	5E-12	(PSMD4)	0.1049	NR unit decrease	Illumina [1671387] (imputed)	N
1279	chr8	91019046	91019047	rs1805807	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8q21.3	NR	rs1805807-T	0.4495	2E-10	(DECR1)	0.5108	NR unit decrease	Illumina [1671387] (imputed)	N
1279	chr8	91019059	91019060	rs1805808	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8q21.3	NR	rs1805808-T	0.3798	5E-12	(DECR1)	0.5584	NR unit decrease	Illumina [1671387] (imputed)	N
1279	chr8	91019059	91019060	rs1805808	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8q21.3	NR	rs1805808-T	0.3798	2E-13	(PSMD4)	0.1132	NR unit decrease	Illumina [1671387] (imputed)	N
1279	chr8	91058390	91058391	rs10956431	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	8q21.3	DECR1	rs10956431-C	0.66890625	3E-6	(DECR1, 12687_2_3)	0.120616384	[0.07-0.171] unit increase	Illumina [> 1000000] (imputed)	N
1279	chr8	91094085	91094086	rs7815279	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8q21.3	NR	rs7815279-A	0.2875	5E-11	(PSMD4)	0.1137	NR unit decrease	Illumina [1671387] (imputed)	N
1279	chr8	91094085	91094086	rs7815279	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8q21.3	NR	rs7815279-A	0.2875	1E-9	(DECR1)	0.5544	NR unit decrease	Illumina [1671387] (imputed)	N
1280	chr8	91096365	91096366	rs2063976	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	8q21.3	NR	rs2063976-T	0.664955	7E-14	(Conditioned on chr8:93190014, chr8:93048104, chr8:92733282)	0.020181425	[0.015-0.025] unit decrease	NR [~ 10000000] (imputed)	N
1280	chr8	91099893	91099894	rs1554924	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8q21.3	NR	rs1554924-A	0.4355	6E-9	(DECR1)	0.4901	NR unit decrease	Illumina [1671387] (imputed)	N
1280	chr8	91099893	91099894	rs1554924	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8q21.3	NR	rs1554924-A	0.4355	3E-10	(PSMD4)	0.1011	NR unit decrease	Illumina [1671387] (imputed)	N
1280	chr8	91110321	91110322	rs7459846	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	8q21.3	NR	rs7459846-A	0.703	5E-14		0.00890771	[0.0066-0.0112] unit decrease	NR [9732723] (imputed)	N
1280	chr8	91127679	91127680	rs6470708	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8q21.3	NR	rs6470708-T	0.378	8E-10	(PSMD4)	0.1025	NR unit decrease	Illumina [1671387] (imputed)	N
1280	chr8	91127679	91127680	rs6470708	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8q21.3	NR	rs6470708-T	0.378	2E-8	(DECR1)	0.4949	NR unit decrease	Illumina [1671387] (imputed)	N
1280	chr8	91137051	91137052	rs2023553	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	8q21.3		rs2023553-T	0.331	4E-13		0.009	[0.007-0.011] unit increase	NR [NR] (imputed)	N
1280	chr8	91160945	91160946	rs10088826	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8q21.3	NR	rs10088826-C	0.3415	7E-10	(PSMD4)	0.102	NR unit decrease	Illumina [1671387] (imputed)	N
1280	chr8	91160945	91160946	rs10088826	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8q21.3	NR	rs10088826-C	0.3415	1E-8	(DECR1)	0.4951	NR unit decrease	Illumina [1671387] (imputed)	N
1280	chr8	91171734	91171735	rs2189261	29471430	Tanikawa C	2018-02-17	Carcinogenesis	GWAS Identifies Two Novel Colorectal Cancer Loci at 16q24.1 and 20q13.12.	Colorectal cancer	6,692 Japanese ancestry cases, 27,178 Japanese ancestry controls	3,713 Japanese ancestry cases, 7,333 Japanese ancestry controls	8q21.3	NR	rs2189261-G	NR	1E-6		1.101	[1.059-1.145]	Illumina [6774630] (imputed)	N
1281	chr8	91281365	91281366	rs74551696	34231218	McDonough CW	2021-07-07	Clin Pharmacol Ther	Adverse Cardiovascular Outcomes and Antihypertensive treatment: A Genome-Wide Interaction Meta-Analysis in the International Consortium for Antihypertensive Pharmacogenomics Studies (ICAPS).	Adverse cardiovascular outcome x calcium channel blockers interaction in hypertension	10,511 European ancestry individuals	NA	8q21.3		rs74551696-A	0.655	7E-7				Affymetrix, Illumina [6400000] (imputed)	N
1282	chr8	91457625	91457626	rs10112371	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	8q21.3		rs10112371-G	NR	3E-8		0.0276	[0.018-0.037] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1282	chr8	91463424	91463425	rs6471081	31926635	Coleman JRI	2019-11-01	Biol Psychiatry	The Genetics of the Mood Disorder Spectrum: Genome-wide Association Analyses of More Than 185,000 Cases and 439,000 Controls.	Bipolar disorder or major depressive disorder	164,933 European ancestry major depressive disorder cases, 20,352 European ancestry bipolar disorder cases, 439,741 European ancestry controls	NA	8q21.3	NR	rs6471081-?	NR	4E-7				NR [NR] (imputed)	N
1282	chr8	91483983	91483983	rs397730966	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	8q21.3	LINC00534	rs397730966-TAC	0.377003	6E-9		0.013758038	[0.0091-0.0184] unit decrease	Affymetrix [93095623] (imputed)	N
1283	chr8	91535685	91535686	rs6988733	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	8q21.3	CALB1, TMEM64	rs6988733-T	0.3491	3E-8		1.0231643		Affymetrix [11880941] (imputed)	N
1283	chr8	91565503	91565504	rs7819519	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	8q21.3		rs7819519-T	NR	1E-8		0.0119	[0.0078-0.016] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
1283	chr8	91570361	91570362	rs1018836	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Ejection fraction in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	8q21.3	NR	rs1018836-?	NR	2E-6				Affymetrix [5486770] (imputed)	N
1283	chr8	91587102	91587103	rs10103696	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	8q21.3	NR	rs10103696-?	NR	9E-23				Affymetrix [NR]	N
1284	chr8	91650817	91650818	rs17643634	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	8q21.3	NR	rs17643634-C	0.835	1E-13		1.0615711	[1.05-1.08]	Affymetrix, Illumina [NR] (imputed)	N
1284	chr8	91650817	91650818	rs17643634	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	8q21.3	NA	rs17643634-C	0.8366	5E-9	(Female)	1.0604454	[1.04-1.08]	Affymetrix, Illumina [NR] (imputed)	N
1284	chr8	91652086	91652087	rs10102274	26545630	Deming Y	2015-09-25	Neurobiol Aging	A potential endophenotype for Alzheimer's disease: cerebrospinal fluid clusterin.	Cerebrospinal fluid clusterin levels	300 Alzheimer's disease cases, 373 controls	NA	8q21.3	TMEM64	rs10102274-?		2E-6		0.853	[NR] unit increase	Illumina [5970354] (imputed)	N
1285	chr8	91753325	91753326	rs76541360	33838163	Luo S	2021-04-07	Kidney Int	Genome-wide association study of serum metabolites in the African American Study of Kidney Disease and Hypertension.	Serum metabolite concentrations in chronic kidney disease	619 African American individuals	NA	8q21.3	TMEM64	rs76541360-?	NR	3E-12	(1-arachidonoyl-GPI)	0.73	[NR] unit increase	Illumina [14760605] (imputed)	N
1285	chr8	91839575	91839576	rs2062882	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	8q21.3		rs2062882-G	0.587	1E-8		0.012	[0.0081-0.0159] unit decrease	Affymetrix [up to 90000000] (imputed)	N
1286	chr8	91894513	91894514	rs35918434	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	8q21.3	NECAB1	rs35918434-T	0.742991	1E-8		0.0136731	[0.009-0.0183] unit increase	NR [16516521] (imputed)	N
1286	chr8	91901464	91901465	rs12675931	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	8q21.3		rs12675931-T	0.7295	6E-7		34.404503	z score increase	NR [6814003]	N
1286	chr8	91907490	91907491	rs1011254	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	8q21.3		rs1011254-?	NR	3E-10				NR [~ 8900000] (imputed)	N
1286	chr8	91927454	91927455	rs2740795	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	8q21.3		rs2740795-A	0.7377	8E-10		0.0098	[0.0067-0.0129] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1286	chr8	91927454	91927455	rs2740795	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	8q21.3	Intergenic	rs2740795-A	0.7377	1E-8	(MTAG)	0.0085	[0.0056-0.0114] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1286	chr8	91937608	91937609	rs74569896	34158603	Liu X	2021-06-22	Pharmacogenomics J	New genetic variants associated with major adverse cardiovascular events in patients with acute coronary syndromes and treated with clopidogrel and aspirin.	Major adverse cardiovascular events in response to aspirin and clopidogrel treatment	51 Han Chinese ancestry cases, 117 Han Chinese ancestry controls	123 Han Chinese ancestry cases, 1,580 Han Chinese ancestry controls	8q21.3		rs74569896-G	0.154	1E-6		1.9	[1.39-2.61]	NR [127834]	N
1286	chr8	91953323	91953324	rs117540320	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	8q21.3	NR	rs117540320-?	NR	9E-6		5908.5825	NR unit decrease	Illumina [2379855]	N
1286	chr8	91997678	91997679	rs2740792	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	8q21.3		rs2740792-?	NR	2E-7				NR [~ 8900000] (imputed)	N
1286	chr8	92010464	92010465	rs7005565	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking initiation	842,717 European ancestry individuals	NA	8q21.3	TMEM55A	rs7005565-C		2E-9		1.024	[NR]	Affymetrix [up to 79000000] (imputed)	N
1287	chr8	92075642	92075643	rs4493873	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine - clinic-based	5,175 European ancestry clinic-based cases, 13,972 European ancestry clinic-based controls	NA	8q21.3	intergenic	rs4493873-?	0.64	5E-6		1.14	[1.08-1.2]	Affymetrix, Illumina [~ 2300000] (imputed)	N
1287	chr8	92091709	92091710	rs9918929	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	8q21.3		rs9918929-T	0.6005	6E-9		0.091998406	[0.061-0.123] mmHg increase	Affymetrix, Illumina [242866] (imputed)	N
1288	chr8	92148194	92148195	rs7846033	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	8q21.3		rs7846033-T	NR	2E-12		0.0134	[0.0097-0.0171] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
1288	chr8	92149428	92149429	rs7009170	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	8q21.3	LRRC69	rs7009170-T	0.317	6E-22		0.179	[0.14-0.22] unit decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1288	chr8	92198210	92198211	rs7832313	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	8q21.3	NR	rs7832313-G	0.3104	1E-8				NR [9056863] (imputed)	N
1288	chr8	92222282	92222283	rs4339600	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	8q21.3		rs4339600-?	NR	3E-13				NR [~ 8900000] (imputed)	N
1288	chr8	92254340	92254341	rs10956797	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	8q21.3	SLC26A7	rs10956797-A	0.7017	3E-13		0.1574	[0.12-0.2] mmHg increase	Affymetrix [NR] (imputed)	N
1288	chr8	92264382	92264383	rs10110827	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	8q21.3		rs10110827-A	NR	3E-8		0.0077	[0.005-0.0104] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1289	chr8	92291943	92291944	rs56017022	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	8q21.3	NR	rs56017022-A	0.09	5E-6		1.13	[1.07-1.19]	Illumina [8468885] (imputed)	N
1289	chr8	92359336	92359337	rs77942316	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	8q21.3	SLC26A7, LRRC69, MIR4661	rs77942316-A	NR	7E-7	(sleep latency)	0.8467	[0.51-1.18] unit increase	Affymetrix [7141204] (imputed)	N
1289	chr8	92360395	92360396	rs921231	21897333	Irvin MR	2011-12-01	Pharmacogenet Genomics	Genes linked to energy metabolism and immunoregulatory mechanisms are associated with subcutaneous adipose tissue distribution in HIV-infected men.	Fat distribution (HIV)	192 European ancestry male cases	NA	8q21.3	SLC26A7	rs921231-G	0.17	2E-6	(univariate, upper trunk)			Illumina [319818]	N
1289	chr8	92360395	92360396	rs921231	21897333	Irvin MR	2011-12-01	Pharmacogenet Genomics	Genes linked to energy metabolism and immunoregulatory mechanisms are associated with subcutaneous adipose tissue distribution in HIV-infected men.	Fat distribution (HIV)	192 European ancestry male cases	NA	8q21.3	SLC26A7	rs921231-G	0.17	1E-6	(multivariate)			Illumina [319818]	N
1290	chr8	92418627	92418628	rs10504906	21897333	Irvin MR	2011-12-01	Pharmacogenet Genomics	Genes linked to energy metabolism and immunoregulatory mechanisms are associated with subcutaneous adipose tissue distribution in HIV-infected men.	Fat distribution (HIV)	192 European ancestry male cases	NA	8q21.3	SLC26A7	rs10504906-A	0.07	8E-6	(univariate, arm)			Illumina [319818]	N
1291	chr8	92559914	92559915	rs2657195	22993228	Williams FM	2012-09-19	Ann Rheum Dis	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NA	8q21.3	intergenic	rs2657195-A	0.22	8E-6		0.13	[0.075-0.185] unit decrease	Affymetrix, Illumina [2552511] (imputed)	N
1291	chr8	92596545	92596546	rs2607097	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking initiation	842,717 European ancestry individuals	NA	8q21.3	SLC26A7, RUNX1T1	rs2607097-C		3E-8		0.981	[NR]	Affymetrix [up to 79000000] (imputed)	N
1291	chr8	92599002	92599003	rs61134957	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	8q21.3	RP11-122C21.1, SLC26A7	rs61134957-C	NR	1E-6	(sleep latency)	0.751	[0.45-1.06] unit increase	Affymetrix [7141204] (imputed)	N
1291	chr8	92619873	92619874	rs1014764	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8q21.3	NR	rs1014764-C	0.01916	1E-8	(MACF1)	0.05201	NR unit increase	Illumina [1671387] (imputed)	N
1291	chr8	92649551	92649552	rs7827176	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	8q21.3	NR	rs7827176-T	NR	2E-8		0.01316	[0.0086-0.0177] unit decrease	Affymetrix [10847151] (imputed)	N
1292	chr8	92669389	92669390	rs7819525	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	8q21.3	NR	rs7819525-T	0.422754286658715	1E-8		0.0052954094	[0.0035-0.0071] unit decrease	NR [NR]	N
1292	chr8	92669389	92669390	rs7819525	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	8q21.3	NR	rs7819525-T	0.422754286658715	2E-8		0.0064591477	[0.0042-0.0087] unit decrease	NR [NR]	N
1292	chr8	92669389	92669390	rs7819525	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	8q21.3	NR	rs7819525-T	0.422754286658715	2E-8		0.008418076	[0.0055-0.0113] unit decrease	NR [NR]	N
1292	chr8	92669389	92669390	rs7819525	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	8q21.3	NR	rs7819525-T	0.422754286658715	2E-8		0.005400875	[0.0035-0.0073] unit decrease	NR [NR]	N
1292	chr8	92678040	92678041	rs6471291	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	8q21.3	NR	rs6471291-G	0.453	8E-17		0.00900389	[0.0069-0.0111] unit decrease	NR [9732723] (imputed)	N
1292	chr8	92702517	92702518	rs12547341	29317602	Hall LS	2018-01-10	Transl Psychiatry	Genome-wide meta-analyses of stratified depression in Generation Scotland and UK Biobank.	Major depressive disorder	6,997 European ancestry female cases, 16,172 European ancestry female controls, 3,852 European ancestry male cases, 16,034 European ancestry male controls	NA	8q21.3	intergenic	rs12547341-A	NR	5E-6		0.08	[0.041-0.119] unit increase	Affymetrix, Illumina [7105178] (imputed)	N
1292	chr8	92703583	92703584	rs10956805	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Subjective well-being (MTAG)	388,538 European ancestry individuals	NA	8q21.3	NR	rs10956805-T	0.5966	2E-8		0.0107	[0.007-0.0144] unit decrease	Illumina [NR] (imputed)	N
1292	chr8	92703583	92703584	rs10956805	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms (MTAG)	354,862 European ancestry individuals	NA	8q21.3	NR	rs10956805-T	0.5908	2E-8		0.0125	[0.0082-0.0168] unit increase	Illumina [NR] (imputed)	N
1292	chr8	92729079	92729079	rs34584334	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	8q21.3	NR	rs34584334-?		6E-9		0.0131405	[0.0087-0.0176] unit increase	Affymetrix [19400418] (imputed)	N
1292	chr8	92733281	92733282	rs6993429	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	8q21.3	NR	rs6993429-A	0.453	1E-13		0.019050471	[0.014-0.024] unit decrease	NR [~ 10000000] (imputed)	N
1292	chr8	92739891	92739892	rs10808638	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	8q21.3	NR	rs10808638-G	0.509	3E-8		0.00808147	[0.0052-0.0109] unit increase	NR [9732723] (imputed)	N
1292	chr8	92765240	92765241	rs6985616	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	8q21.3	RUNX1T1	rs6985616-A	0.557361	1E-9		0.0113508	[0.0077-0.015] unit decrease	NR [13737936] (imputed)	N
1292	chr8	92769568	92769569	rs62526122	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	NA	8q21.3	RP11-122C21.1	rs62526122-G	0.7101	1E-9		0.2108	[0.14-0.28] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1292	chr8	92773308	92773309	rs4440591	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	8q21.3	RUNX1T1	rs4440591-A	0.5788	2E-11		0.017484186	[0.012-0.023] unit increase	Affymetrix [~ 11515000] (imputed)	N
1292	chr8	92775371	92775372	rs10956808	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking initiation (ever regular vs never regular)	up to 433,216 European ancestry individuals	NA	8q21.3	RUNX1T1	rs10956808-G	0.422	2E-9		0.0131	[0.0088-0.0174] unit decrease	Illumina [~ 250000] (imputed)	N
1292	chr8	92777059	92777060	rs7830689	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	8q21.3		rs7830689-G	0.592	3E-14		0.009	[0.007-0.011] unit increase	NR [NR] (imputed)	N
1292	chr8	92777432	92777433	rs13258512	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Smoking status (ever vs never smokers)	336,066 British ancestry individuals	NA	8q21.3	NR	rs13258512-A	0.5779	6E-9		1.0299722	NR	NR [8968716] (imputed)	N
1292	chr8	92777432	92777433	rs13258512	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	8q21.3	RUNX1T1	rs13258512-A	0.5761	3E-13		0.014874498	[0.011-0.019] unit increase	Affymetrix [11514654] (imputed)	N
1293	chr8	92861608	92861609	rs6994041	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	8q21.3	NR	rs6994041-G	0.14	1E-5	(IFNAR2_of_CD20p)			Illumina [5084123] (imputed)	N
1294	chr8	92967665	92967666	rs76861316	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	8q21.3	RUNX1T1	rs76861316-T	0.081	1E-9		0.0133	[0.009-0.0176] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
1294	chr8	92970152	92970153	rs4500123	26184070	Aebi M	2015-07-16	Am J Med Genet B Neuropsychiatr Genet	Gene-set and multivariate genome-wide association analysis of oppositional defiant behavior subtypes in attention-deficit/hyperactivity disorder.	Oppositional defiant disorder dimensions in attention-deficit hyperactivity disorder	750 European ancestry child and adolescent cases	NA	8q21.3	RUNX1T1	rs4500123-?	NR	6E-6	(multivariate)			Perlegen [1871025] (imputed)	N
1294	chr8	92976562	92976563	rs2976501	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	8q21.3	NR	rs2976501-?	NR	8E-8		5.361	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1294	chr8	93005446	93005447	rs1814032	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	8q21.3	NR	rs1814032-A	0.224	3E-11		0.011071	[0.0078-0.0143] unit decrease	NR [~ 9732723] (imputed)	N
1294	chr8	93013665	93013666	rs2916247	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	8q21.3	RUNX1T1	rs2916247-A	NR	3E-8		0.02014683	[0.013-0.027] unit decrease	Affymetrix [NR]	N
1294	chr8	93048103	93048104	rs6986430	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	8q21.3	NR	rs6986430-C	0.222377	2E-15	(Conditioned on chr8:92733282)	0.024337659	[0.018-0.03] unit decrease	NR [~ 10000000] (imputed)	N
1294	chr8	93051253	93051254	rs4734170	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	8q21.3		rs4734170-C	0.773	3E-15		0.011	[0.009-0.013] unit increase	NR [NR] (imputed)	N
1295	chr8	93066652	93066653	rs7833370	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	8q21.3	NR	rs7833370-G	0.221	4E-14		0.00983628	[0.0073-0.0124] unit decrease	NR [9732723] (imputed)	N
1295	chr8	93111531	93111532	rs1484559	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Problematic alcohol use (MTAG)	972,915 European ancestry individuals	NA	8q21.3	NR	rs1484559-C	0.7831	2E-8		0.016629806	[0.011-0.022] unit increase	Affymetrix [10613246] (imputed)	N
1295	chr8	93111531	93111532	rs1484559	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol consumption (drinks per week) (MTAG)	972,915 European ancestry individuals	NA	8q21.3	NR	rs1484559-C	0.779	2E-8		0.012253313	[0.008-0.0165] unit increase	Affymetrix [NR] (imputed)	N
1295	chr8	93137573	93137574	rs7819986	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	8q21.3	Intergenic	rs7819986-A	0.1338	5E-10	(MTAG)	0.0152	[0.01-0.02] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1295	chr8	93158295	93158296	rs7839381	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	8q21.3	NR	rs7839381-?	NR	3E-7		5.156	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1295	chr8	93164504	93164505	rs991871	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	8q21.3	NR	rs991871-T	0.230616	9E-13		0.053391546	[0.039-0.068] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1295	chr8	93164504	93164505	rs991871	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	8q21.3	Intergenic	rs991871-A	0.7658	2E-14	(MTAG)	0.0208	[0.016-0.026] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1295	chr8	93164504	93164505	rs991871	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	8q21.3	Intergenic	rs991871-A	0.7658	6E-13		0.0243	[0.018-0.031] unit increase	Affymetrix, Illumina [10100000] (imputed)	N
1295	chr8	93177708	93177709	rs7825157	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	8q21.3	Intergenic	rs7825157-T	0.7694	8E-11	(MTAG)	0.0138	[0.0097-0.0179] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1295	chr8	93178959	93178960	rs13269272	30920136	Stapleton CP	2019-02-27	Am J Transplant	The impact of donor and recipient common clinical and genetic variation on estimated glomerular filtration rate in a European renal transplant population.	Estimated glomerular filtration rate change in renal transplantation (recipient effect)	Up to 2,298 European ancestry individuals	NA	8q21.3	intergenic	rs13269272-A	NR	2E-7				Illumina [up to 3923932] (imputed)	N
1295	chr8	93179975	93179976	rs6471325	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	8q21.3	NR	rs6471325-A	NR	4E-12		6.925	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1295	chr8	93180964	93180965	rs2920940	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	8q21.3	NR	rs2920940-T	NR	3E-14		7.609	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1295	chr8	93182600	93182601	rs2920939	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	8q21.3	NR	rs2920939-?	NR	5E-8				Affymetrix [~ 8270000] (imputed)	N
1295	chr8	93182600	93182601	rs2920939	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	8q21.3	RUNX1T1	rs2920939-A	0.598	9E-13		0.0086	[0.0062-0.011] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
1295	chr8	93182600	93182601	rs2920939	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	8q21.3		rs2920939-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1295	chr8	93182600	93182601	rs2920939	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	8q21.3	ENSG00000233778	rs2920939-A	NR	2E-8		0.017229082	[0.011-0.023] unit increase	Affymetrix [NR]	N
1295	chr8	93184064	93184065	rs3857914	30617275	Erzurumluoglu AM	2019-01-07	Mol Psychiatry	Meta-analysis of up to 622,409 individuals identifies 40 novel smoking behaviour associated genetic loci.	Smoking initiation	324,851 European ancestry individuals, 21,962 South Asian ancestry individuals	up to 275,596 European ancestry individuals	8q21.3	RUNX1T1	rs3857914-C	0.19	2E-9		0.0157	[0.0098-0.0216] unit increase (replication)	Affymetrix, Illumina [up to 1207583] (imputed)	N
1295	chr8	93184928	93184929	rs2930537	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	8q21.3	RUNX1T1	rs2930537-A	0.2918	5E-11		0.01863045	[0.013-0.024] unit increase	Affymetrix [~ 11515000] (imputed)	N
1295	chr8	93190013	93190014	rs9987376	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	8,072 individuals	NA	8q21.3		rs9987376-T	0.43	6E-6				NR [13131314] (imputed)	N
1295	chr8	93190013	93190014	rs9987376	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	8q21.3		rs9987376-T	0.43	6E-19		8.89	z score increase	Affymetrix [9061022] (imputed)	N
1295	chr8	93190013	93190014	rs9987376	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	8q21.3	NR	rs9987376-T	0.4204	1E-17				NR [9056863] (imputed)	N
1295	chr8	93190013	93190014	rs9987376	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	8q21.3	NR	rs9987376-G	0.574	4E-16		0.00888939	[0.0068-0.011] unit decrease	NR [9732723] (imputed)	N
1295	chr8	93190013	93190014	rs9987376	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	8q21.3	NR	rs9987376-G	0.574251	2E-15	(Conditioned on chr8:93048104, chr8:92733282)	0.020468244	[0.015-0.026] unit decrease	NR [~ 10000000] (imputed)	N
1295	chr8	93191835	93191836	rs9297905	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	8q21.3	STAB1, NT5DC2, SMIM4, PBRM1, GNL3, GLT8D1, SPCS1, NEK4, ITIH1, ITIH3, ITIH4, RP5-966M1.6	rs9297905-?		8E-10				NR [7428630] (imputed)	N
1295	chr8	93191835	93191836	rs9297905	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	8q21.3	NR	rs9297905-?		1E-10				NR [7428630] (imputed)	N
1296	chr8	93195528	93195529	rs5003492	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	8q21.3	RUNX1T1	rs5003492-A	0.4252	1E-10		0.01309682	[0.0091-0.0171] unit increase	Affymetrix [11514654] (imputed)	N
1296	chr8	93195528	93195529	rs5003492	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	8q21.3	NR	rs5003492-G	0.572	5E-12		0.010182	[0.0073-0.0131] unit increase	NR [9732723] (imputed)	N
1296	chr8	93201035	93201036	rs1899896	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	8q21.3		rs1899896-C	0.701	4E-19		0.011	[0.009-0.013] unit decrease	NR [NR] (imputed)	N
1296	chr8	93201035	93201036	rs1899896	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	8q21.3		rs1899896-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1296	chr8	93202127	93202128	rs2218439	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking initiation	842,717 European ancestry individuals	NA	8q21.3	MIR7641-2, LOC102724710	rs2218439-A		6E-12		1.024	[NR]	Affymetrix [up to 79000000] (imputed)	N
1296	chr8	93204400	93204400	rs35576477	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	8q21.3	NR	rs35576477-?	0.5614	3E-7	(Inferior Parietal)	18.416763	[11.39-25.45] unit decrease	Affymetrix, Illumina [NR]	N
1296	chr8	93212846	93212847	rs1444498	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	8q21.3		rs1444498-C	0.42	1E-17		8.58	z score increase	Affymetrix [9061022] (imputed)	N
1296	chr8	93212846	93212847	rs1444498	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	8q21.3		rs1444498-C	0.42	2E-9		6.04	z score increase	Affymetrix [9061022] (imputed)	N
1296	chr8	93212846	93212847	rs1444498	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	8q21.3	NR	rs1444498-C	0.4177	8E-10				NR [9056863] (imputed)	N
1296	chr8	93212953	93212954	rs1444496	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	8q21.3		rs1444496-?	NR	2E-13				NR [9705931] (imputed)	N
1296	chr8	93218123	93218124	rs72673503	30818990	Yu D	2019-03-01	Am J Psychiatry	Interrogating the Genetic Determinants of Tourette's Syndrome and Other Tic Disorders Through Genome-Wide Association Studies.	Tourette syndrome	4,271 European ancestry cases, 548 European ancestry cases from 207 families, 9,488 European ancestry controls	706 Icelandic ancestry cases, 6,068 Icelandic ancestry controls	8q21.3	NR	rs72673503-A	0.1451	7E-6		1.1701126		Illumina [8265319] (imputed)	N
1296	chr8	93219720	93219721	rs116951791	24322204	Winham SJ	2013-12-10	Mol Psychiatry	Genome-wide association study of bipolar disorder accounting for effect of body mass index identifies a new risk allele in TCF7L2.	Bipolar disorder (body mass index interaction)	388 European ancestry cases, 1,020 European ancestry controls	NA	8q21.3	NR	rs116951791-?	NR	7E-7				NR [up to 8466825] (imputed)	N
1296	chr8	93235674	93235675	rs1905616	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		8q21.3	RUNX1T1	rs1905616-G	0.66871	2E-8		0.00819683	[0.0053-0.0111] unit increase	Affymetrix [12370749]	N
1296	chr8	93235674	93235675	rs1905616	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	8q21.3		rs1905616-A	0.327	3E-8		0.0083	[0.0054-0.0112] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1296	chr8	93261403	93261404	rs11774611	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	8q21.3		rs11774611-T	NR	8E-9		0.0098	[0.0065-0.0131] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1296	chr8	93261728	93261729	rs35681505	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	8q21.3	RUNX1T1	rs35681505-T	0.7339	5E-9		0.015616262	[0.01-0.021] unit decrease	Affymetrix [11515109] (imputed)	N
1296	chr8	93273269	93273270	rs72673538	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	8q21.3	RUNX1T1	rs72673538-C	0.285	4E-8		0.0072	[0.0047-0.0097] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
1296	chr8	93283577	93283578	rs7006885	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	8q21.3	RUNX1T1, TRIQK	rs7006885-A	0.2878	9E-12		1.0305576		Affymetrix [11880941] (imputed)	N
1296	chr8	93283798	93283799	rs6993870	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	8q21.3		rs6993870-C	NR	3E-9		0.0124	[0.0083-0.0165] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1296	chr8	93284680	93284681	rs17748153	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	8q21.3	Intergenic	rs17748153-T	0.2603	2E-10	(MTAG)	0.0166	[0.012-0.022] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1296	chr8	93286726	93286727	rs17748165	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	8q21.3		rs17748165-A	0.7422	3E-8		0.014	[0.01-0.018] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
1296	chr8	93291162	93291163	rs17748359	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	8q21.3	Intergenic	rs17748359-A	0.7402	3E-8	(MTAG)	0.0113	[0.0074-0.0152] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1296	chr8	93291162	93291163	rs17748359	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	8q21.3	Intergenic	rs17748359-A	0.7403	7E-11	(MTAG)	0.0123	[0.0086-0.016] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1297	chr8	93327531	93327532	rs35606437	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	8q22.1		rs35606437-A	0.2675	4E-11		0.0105	[0.0074-0.0136] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1297	chr8	93327531	93327532	rs35606437	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	8q22.1	Intergenic	rs35606437-A	0.2675	1E-12	(MTAG)	0.0105	[0.0076-0.0134] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1297	chr8	93341496	93341497	rs35040843	30336701	Sanchez-Roige S	2018-10-19	Am J Psychiatry	Genome-Wide Association Study Meta-Analysis of the Alcohol Use Disorders Identification Test (AUDIT) in Two Population-Based Cohorts.	Alcohol use disorder (total score)	141,932 European ancestry individuals	NA	8q22.1	RP11-700E23.3	rs35040843-T	NR	3E-8		5.55	[NR] z score increase	NR [16213998]	N
1297	chr8	93356389	93356390	rs72673588	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	8q22.1		rs72673588-C	0.8152	1E-9		0.017	[0.011-0.023] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
1297	chr8	93366289	93366290	rs4259397	30610198	Soler Artigas M	2019-01-04	Mol Psychiatry	Attention-deficit/hyperactivity disorder and lifetime cannabis use: genetic overlap and causality.	Attention deficit hyperactivity disorder or cannabis use	18,345 European ancestry ADHD cases, 14,374 European ancestry cannabis use cases, 50,410 European ancestry controls	NA	8q22.1	intergenic	rs4259397-G	NR	5E-8		1.0752687	[1.04-1.1]	NR [5009020] (imputed)	N
1297	chr8	93372259	93372260	rs13253854	29678681	Matana A	2018-04-18	Genomics	Genome-wide meta-analysis identifies novel gender specific loci associated with thyroid antibodies level in Croatians.	Plasma anti-thyroglobulin levels	1,596 Croatian ancestry women, 1,033 Croatian ancestry men	NA	8q22.1	RUNX1T1	rs13253854-C	NR	3E-6		0.155	[0.09-0.22] unit increase	Illumina [5527232] (imputed)	N
1297	chr8	93378661	93378662	rs55671930	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	8q22.1	RUNX1T1	rs55671930-A	0.9	7E-10		0.0121	[0.0082-0.016] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
1297	chr8	93394600	93394601	rs372420182	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	8q22.1	LOC102724710	rs372420182-C	0.978648	3E-8		0.0404965	[0.026-0.055] unit decrease	NR [16516521] (imputed)	N
1297	chr8	93404441	93404442	rs10956838	30478444	Demontis D	2018-11-26	Nat Genet	Discovery of the first genome-wide significant risk loci for attention deficit/hyperactivity disorder.	Attention deficit hyperactivity disorder	19,099 European ancestry cases, 72 non-European ancestry cases, 1,012 Han Chinese ancestry cases, 34,194 European ancestry controls, 72 non-European ancestry controls, 925 Han Chinese ancestry controls	5,085 Icelandic ancestry cases, 5,857 cases, 131,122 Icelandic ancestry controls, 70,393 controls	8q22.1	intergenic	rs10956838-A	NR	1E-6		1.0626992	NR	Affymetrix, Illumina, Perlegen [8047421] (imputed)	N
1297	chr8	93404441	93404442	rs10956838	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	8q22.1	NR	rs10956838-?	NR	9E-8		5.341	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1297	chr8	93426099	93426100	rs62519933	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antimigraine preparations)	5,521 European ancestry cases, 114,323 European ancestry controls, 387 East Asian ancestry cases, 178,339 East Asian ancestry controls	NA	8q22.1		rs62519933-G	NR	3E-8		0.1169	[0.076-0.158] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1297	chr8	93426099	93426100	rs62519933	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	8q22.1		rs62519933-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1297	chr8	93448755	93448756	rs16914980	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (antimigraine preparations)	5,521 European ancestry cases, 114,323 European ancestry controls	NA	8q22.1	RP11-700E23.1	rs16914980-C	0.259439	3E-8		0.122270055	[0.079-0.166] unit decrease	Affymetrix [7288503] (imputed)	N
1298	chr8	93501728	93501729	rs35480289	28644415	Guenard F	2017-06-23	Nutrients	Genome-Wide Association Study of Dietary Pattern Scores.	Prudent dietary pattern	141 individuals	NA	8q22.1	LOC102724710	rs35480289-?		4E-6				Illumina [2668805]	N
1298	chr8	93525402	93525403	rs114258913	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	8q22.1	Intergenic	rs114258913-G	0.982	3E-6	(AA)	0.074	unit decrease	Illumina [NR] (imputed)	N
1298	chr8	93539701	93539702	rs544648171	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Gout (PheCode 274.1)	375 European ancestry cases, 455,973 European ancestry controls	NA	8q22.1		rs544648171-T	0.003209	4E-9		5.54	[3.7-7.38] unit increase	NR [11842647] (imputed)	N
1299	chr8	93588339	93588340	rs1449245	30470734	Hackinger S	2018-11-23	Transl Psychiatry	Evidence for genetic contribution to the increased risk of type 2 diabetes in schizophrenia.	Schizophrenia and type 2 diabetes	505 Greek ancestry cases,  1,125 Greek ancestry controls	NA	8q22.1	RP11-587H10.2	rs1449245-A	0.79	3E-8		1.96	[1.71-2.20]	Illumina [14528340] (imputed)	N
1299	chr8	93645235	93645236	rs10097386	31372216	Haaland OA	2019-06-24	F1000Res	A genome-wide scan of cleft lip triads identifies parent-of-origin interaction effects between ANK3 and maternal smoking, and between ARHGEF10 and alcohol consumption.	Cleft lip with or without cleft palate x maternal periconceptional smoking interaction (parent of origin effect)	825 European ancestry case-parent duos or trios, 1,024 Asian ancestry case-parent duos or trios, 59 case-parent duos or trios	NA	8q22.1	NR	rs10097386-?	NR	3E-6		2.86	[1.85-4.43]	NR [341191]	N
1299	chr8	93659752	93659753	rs1839261	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	8q22.1	NR	rs1839261-?	NR	7E-9				Affymetrix [NR]	N
1302	chr8	94024221	94024222	rs56214552	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Logical memory (immediate recall) in Alzheimer's disease dementia	190 European ancestry Alzheimer's disease dementia cases	NA	8q22.1	C8orf83, IRF5P1, FAM92A1	rs56214552-G	0.26	4E-7		0.44	[0.28-0.6] unit increase	Illumina [8411492] (imputed)	N
1302	chr8	94056372	94056373	rs2134937	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Acute ischemic stroke x type 2 diabetes interaction	11,796 European ancestry cases, 178,481 European ancestry controls	NA	8q22.1	TRIQK	rs2134937-C	0.049	3E-8				Affymetrix [at least 723305] (imputed)	N
1302	chr8	94068095	94068096	rs141491217	32277301	Okuda H	2020-04-10	Clin Exp Nephrol	Genome-wide association study identifies new loci for albuminuria in the Japanese population.	Urinary albumin excretion	7,805 Japanese ancestry individuals	NA	8q22.1	TRIQK	rs141491217-G	0.039	2E-8		33.01	[21.56-44.46] unit increase	Illumina [4962728] (imputed)	N
1302	chr8	94085538	94085539	rs1027730	20732625	Neale BM	2010-08-01	J Am Acad Child Adolesc Psychiatry	Meta-analysis of genome-wide association studies of attention-deficit/hyperactivity disorder.	Attention deficit hyperactivity disorder	2,064 European ancestry trios, 896 European ancestry cases, 2,455 European ancestry controls	NA	8q22.1	intergenic	rs1027730-A	NR	7E-6				Affymetrix, Illumina, Perlegen [1206462] (imputed)	N
1303	chr8	94159344	94159345	rs111231613	34112972	DeMichele-Sweet MAA	2021-06-10	Mol Psychiatry	Genome-wide association identifies the first risk loci for psychosis in Alzheimer disease.	Psychosis in Alzheimer's disease	4,551 European ancestry cases, 5,796 European ancestry controls, 894 African American or unknown ancestry cases, 1,076 African American or unknown ancestry controls	NA	8q22.1		rs111231613-T	NR	1E-6		0.75	[0.66-0.84]	Illumina [7105229] (imputed)	N
1303	chr8	94169349	94169350	rs278567	20889312	Wang KS	2010-10-01	Schizophr Res	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	8q22.1	NR	rs278567-?	NR	8E-6		1.247	[NR]	Affymetrix [722112]	N
1303	chr8	94195919	94195920	rs278587	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 16)	2,187 European ancestry individuals	NA	8q22.1	NR	rs278587-A	0.06488	9E-7		0.3021	[0.18-0.42] unit increase	Illumina [10677593] (imputed)	N
1303	chr8	94222944	94222945	rs278541	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	8q22.1	NR	rs278541-C	0.97906300623053	4E-8	(IGP54)	0.8053	[0.52-1.09] unit decrease	Illumina [~ 2500000] (imputed)	N
1303	chr8	94222944	94222945	rs278541	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	8q22.1	NR	rs278541-C	0.97906300623053	4E-8	(IGP14)	0.8017	[0.52-1.09] unit decrease	Illumina [~ 2500000] (imputed)	N
1304	chr8	94303800	94303801	rs55798256	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	8q22.1	LOC100133058, LOC642924	rs55798256-G	0.059	2E-6		3.1	[1.91-5.02]	Illumina [1556551]	N
1304	chr8	94358097	94358098	rs7387468	22832960	Service SK	2012-05-15	Transl Psychiatry	A genome-wide meta-analysis of association studies of Cloninger's Temperament Scales.	Temperament	Up to 12,433 European ancestry individuals	NA	8q22.1	FAM92A1	rs7387468-T	0.587	3E-6	(Novelty seeking)	0.22	unit increase	Affymetrix, Illumina [1252222] (imputed)	N
1306	chr8	94561200	94561201	rs150231719	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	L1-L4 bone mineral density x serum urate levels interaction	2,207 men, 2,354 women	NA		LINC00535	rs150231719-?	NR	2E-6		1.95	[NR] unit increase	Affymetrix [NR] (imputed)	N
1306	chr8	94630604	94630605	rs150485199	30718321	Sanchez-Roige S	2019-02-04	J Neurosci	Genome-wide association studies of impulsive personality traits (BIS-11 and UPPSP) and drug experimentation in up to 22,861 adult research participants identify loci in the CACNA1I and CADM2 genes.	Lack of perseverance	22,861 European ancestry individuals	NA	8q22.1	TRIQK, FAM92A1	rs150485199-T	0.9979	7E-7		0.607	[0.846-0.367] unit decrease	Illumina [11914280] (imputed)	N
1307	chr8	94672541	94672542	rs4478545	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	8q22.1		rs4478545-?	NR	1E-9		0.0181	unit decrease	NR [NR]	N
1307	chr8	94715290	94715291	rs6471393	25461247	Lehmann DS	2015-02-01	Pharmacogenet Genomics	Genome-wide association study of virologic response with efavirenz-containing or abacavir-containing regimens in AIDS clinical trials group protocols.	Response to efavirenz-containing treatment in HIV 1 infection (virologic failure)	Up to 737 European ancestry individuals, Up to 545 Black individuals, Up to 314 Hispanic individuals	NA	8q22.1	NR	rs6471393-A	NR	7E-6	(phenotype 3)	1.57	[NR]	Illumina [> 8000000] (imputed)	N
1307	chr8	94746697	94746698	rs3133974	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	8q22.1		rs3133974-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1307	chr8	94755225	94755226	rs3134012	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	8q22.1	NR	rs3134012-C	0.719152980071192	3E-9		0.006082881	[0.0041-0.0081] unit increase	NR [NR]	N
1307	chr8	94755225	94755226	rs3134012	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	8q22.1	NR	rs3134012-C	0.719152980071192	3E-9		0.007459963	[0.005-0.0099] unit increase	NR [NR]	N
1307	chr8	94755225	94755226	rs3134012	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	8q22.1	NR	rs3134012-C	0.719152980071192	2E-9		0.009713225	[0.0065-0.0129] unit increase	NR [NR]	N
1307	chr8	94755225	94755226	rs3134012	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	8q22.1	NR	rs3134012-C	0.719152980071192	4E-8		0.007959738	[0.0051-0.0108] unit increase	NR [NR]	N
1307	chr8	94755225	94755226	rs3134012	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	8q22.1	NR	rs3134012-C	0.719152980071192	3E-9		0.0061978907	[0.0042-0.0082] unit increase	NR [NR]	N
1308	chr8	94783489	94783490	rs73694942	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	8q22.1	NR	rs73694942-?	NR	6E-6		0.709321	[0.4-1.02] unit increase	NR [13958389] (imputed)	N
1309	chr8	94898168	94898169	rs141693696	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Unilateral cleft lip and palate	205 Asian ancestry cases, 315 European ancestry cases, 692 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	8q22.1	NR	rs141693696-?	NR	2E-6		2.81	[2.47-3.18]	Illumina [539000] (imputed)	N
1309	chr8	94916102	94916103	rs35820208	22952603	Hart AB	2012-08-28	PLoS One	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 10 individuals	NA	8q22.1	intergenic	rs35820208-?	NR	3E-6	(SF7)			Affymetrix [5476100] (imputed)	N
1310	chr8	95100301	95100302	rs114684581	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	7,894 Sub-Saharan African ancestry individuals	NA	8q22.1		rs114684581-T	0.851773	1E-6		0.0126612	[0.0076-0.0178] unit decrease	Illumina [13900000] (imputed)	N
1310	chr8	95100301	95100302	rs114684581	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,963 Sub-Saharan African ancestry females	NA	8q22.1		rs114684581-T	0.848145	3E-7		0.0181291	[0.011-0.025] unit decrease	Illumina [13900000] (imputed)	N
1310	chr8	95110743	95110744	rs7006531	28498854	Liang J	2017-05-12	PLoS Genet	Single-trait and multi-trait genome-wide association analyses identify novel loci for blood pressure in African-ancestry populations.	Pulse pressure	Up to 31,155 African individuals	Up to 4,187 African individuals, up to 14,016 Korean ancestry individuals, up to 23,914 European ancestry individuals, up to 12,278 Hispanic individuals	8q22.1	CDH17	rs7006531-G	NR	6E-12		1.0218	[0.73-1.31] unit decrease	Affymetrix, Illumina [at least 30072738] (imputed)	N
1310	chr8	95110743	95110744	rs7006531	28498854	Liang J	2017-05-12	PLoS Genet	Single-trait and multi-trait genome-wide association analyses identify novel loci for blood pressure in African-ancestry populations.	Blood pressure traits (multi-trait analysis)	Up to 31,155 African individuals	Up to 4,187 African individuals, up to 14,016 Korean ancestry individuals, up to 23,914 European ancestry individuals, up to 12,278 Hispanic individuals	8q22.1	CDH17	rs7006531-G	NR	2E-13	(Het)			Affymetrix, Illumina [at least 30072738] (imputed)	N
1310	chr8	95117388	95117389	rs115888294	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Pulse pressure x alcohol consumption interaction (2df test)	91,099 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	238,053 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,447 Hispanic ancestry drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic ancestry non-drinkers	8q22.1	CDH17	rs115888294-T	0.93	1E-8	(AA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1311	chr8	95167246	95167247	rs2514805	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	8q22.1	CDH17, LOC100131775, LOC100130524	rs2514805-G	0.118	1E-8		2.95	[2-4.35]	Illumina [1556551]	N
1311	chr8	95234715	95234716	rs2445704	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q22.1	CDH17	rs2445704-G	0.366655	5E-9	(-16 ms)	0.0308849	[0.02-0.042] unit decrease	Affymetrix [10000000] (imputed)	N
1311	chr8	95234715	95234716	rs2445704	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q22.1	CDH17	rs2445704-G	0.366655	1E-8	(-14 ms)	0.0297716	[0.018-0.041] unit decrease	Affymetrix [10000000] (imputed)	N
1311	chr8	95260224	95260225	rs2623168	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	8q22.1	CDH17, GEM	rs2623168-?	NR	1E-9		0.0474695	[0.032-0.063] unit increase	Illumina [4804024] (imputed)	N
1311	chr8	95264264	95264265	rs138582164	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Systolic blood pressure	422,713 European ancestry individuals	NA	8q22.1		rs138582164-?	NR	3E-12		0.305924	[0.22-0.39] unit increase	NR [9800000] (imputed)	N
1311	chr8	95268902	95268903	rs74900445	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	8q22.1		rs74900445-?	NR	1E-12				NR [~ 8900000] (imputed)	N
1311	chr8	95272604	95272605	rs2170363	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	8q22.1		rs2170363-C	NR	3E-10		0.0207	[0.014-0.027] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1311	chr8	95272604	95272605	rs2170363	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	8q22.1		rs2170363-C	NR	5E-21		0.0294	[0.023-0.035] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
1311	chr8	95273121	95273134	rs143282724	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	8q22.1	GEM	rs143282724-A	0.1283	5E-11		0.2409	[0.17-0.31] mmHg increase	Affymetrix [NR] (imputed)	N
1311	chr8	95279639	95279640	rs12675257	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	8q22.1	GEM	rs12675257-T	0.135	1E-6		0.0438	[0.026-0.062] unit increase	NR [8041861] (imputed)	N
1311	chr8	95279960	95279961	rs72672639	28282560	Pott J	2017-02-24	Atherosclerosis	Genome-wide meta-analysis identifies novel loci of plaque burden in carotid artery.	Carotid plaque burden	7,189 European ancestry individuals	NA	8q22.1	GEM	rs72672639-A	NR	4E-6		0.12594858	[0.073-0.179] unit increase	Affymetrix [9576485] (imputed)	N
1312	chr8	95401264	95401265	rs12681366	28232668	Yu Y	2017-02-24	Nat Commun	Genome-wide analyses of non-syndromic cleft lip with palate identify 14 novel loci and genetic heterogeneity.	Nonsyndromic cleft lip with cleft palate	2,033 Han Chinese ancestry cases, 4,051 Han Chinese ancestry controls	1,346 Han Chinese ancestry cases, 4,542 Han Chinese ancestry controls	8q22.1	RAD54B	rs12681366-A	0.51	2E-10		1.2048193	[NR]	Illumina [803202]	N
1313	chr8	95489280	95489281	rs72674824	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	8q22.1	RAD54B	rs72674824-T	0.758657	3E-8		0.013661	[0.0089-0.0184] unit decrease	NR [16516521] (imputed)	N
1313	chr8	95503552	95503552	rs397957624	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	8q22.1		rs397957624-CA	0.48853	5E-10		0.0171994	[0.012-0.023] unit decrease	Illumina [13479924] (imputed)	N
1313	chr8	95503552	95503552	rs397957624	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	163,835 East Asian ancestry individuals	NA	8q22.1		rs397957624-CA	0.488755	7E-9		0.0188034	[0.012-0.025] unit decrease	Illumina [13479178] (imputed)	N
1313	chr8	95507327	95507328	rs4366055	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	8q22.1	KIAA1429	rs4366055-C	0.49	2E-9	(Japanese)	0.02	[0.014-0.026] unit decrease	Illumina [6108953] (imputed)	N
1313	chr8	95530968	95530969	rs1023767	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	8q22.1	NR	rs1023767-A	NR	2E-12		0.0206	[0.015-0.026] unit increase	Affymetrix [9000000] (imputed)	N
1313	chr8	95541301	95541302	rs957448	28232668	Yu Y	2017-02-24	Nat Commun	Genome-wide analyses of non-syndromic cleft lip with palate identify 14 novel loci and genetic heterogeneity.	Nonsyndromic cleft lip with cleft palate	2,033 Han Chinese ancestry cases, 4,051 Han Chinese ancestry controls	1,346 Han Chinese ancestry cases, 4,542 Han Chinese ancestry controls	8q22.1	KIAA1429	rs957448-A	0.5	1E-12		1.2345679	[NR]	Illumina [803202]	N
1313	chr8	95541458	95541459	rs76706433	27018472	Leslie EJ	2016-04-07	Am J Hum Genet	A Genome-wide Association Study of Nonsyndromic Cleft Palate Identifies an Etiologic Missense Variant in GRHL3.	Cleft palate	38 European ancestry cases, 835 European ancestry controls, 21 Hispanic cases, 626 Hispanic controls, 2 Asian ancestry cases, 161 Asian ancestry controls, 38 Indian ancestry controls, 15 Sub-Saharan African ancestry cases, 2 African American cases, 68 Sub-Saharan African ancestry controls, 5 African American controls, 1 African control, 4 controls, 114 European ancestry case-parent trios, 30 Hispanic case-parent trios, 39 East Asian case-parent trios, 1 South East Asian ancestry case-parent trio, 5 Sub-Saharan African case-parent trios	246 European ancestry cases, 1,685 European ancestry controls	8q22.1	NR	rs76706433-C	NR	8E-6		5.96	[2.72-13.05]	Illumina [34985077] (imputed)	N
1313	chr8	95541458	95541459	rs76706433	27018472	Leslie EJ	2016-04-07	Am J Hum Genet	A Genome-wide Association Study of Nonsyndromic Cleft Palate Identifies an Etiologic Missense Variant in GRHL3.	Cleft palate	38 European ancestry cases, 835 European ancestry controls, 21 Hispanic cases, 626 Hispanic controls, 2 Asian ancestry cases, 161 Asian ancestry controls, 38 Indian ancestry controls, 15 Sub-Saharan African ancestry cases, 2 African American cases, 68 Sub-Saharan African ancestry controls, 5 African American controls, 1 African control, 4 controls	246 European ancestry cases, 1,685 European ancestry controls	8q22.1	NR	rs76706433-C	NR	6E-6	(EA)	6.79	[2.964-15.56]	Illumina [34985077] (imputed)	N
1313	chr8	95541458	95541459	rs76706433	27018472	Leslie EJ	2016-04-07	Am J Hum Genet	A Genome-wide Association Study of Nonsyndromic Cleft Palate Identifies an Etiologic Missense Variant in GRHL3.	Cleft palate	38 European ancestry cases, 835 European ancestry controls, 21 Hispanic cases, 626 Hispanic controls, 2 Asian ancestry cases, 161 Asian ancestry controls, 38 Indian ancestry controls, 15 Sub-Saharan African ancestry cases, 2 African American cases, 68 Sub-Saharan African ancestry controls, 5 African American controls, 1 African control, 4 controls	246 European ancestry cases, 1,685 European ancestry controls	8q22.1	NR	rs76706433-C	NR	6E-6		6.79	[2.96-15.56]	Illumina [34985077] (imputed)	N
1314	chr8	95568526	95568527	rs11986009	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	8q22.1		rs11986009-T	NR	9E-18		0.0172	[0.013-0.021] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1314	chr8	95571601	95571602	rs10104041	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	8q22.1	NA	rs10104041-A	0.2873	1E-11		0.0143	[0.01-0.018] unit decrease	NR [~ 27400000] (imputed)	N
1314	chr8	95577128	95577129	rs28729295	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	8q22.1		rs28729295-T	NR	2E-14		0.0172	[0.013-0.022] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
1314	chr8	95578200	95578201	rs72674867	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	8q22.1		rs72674867-A	0.765	4E-8		0.013	[0.0091-0.0169] unit increase	Affymetrix [up to 90000000] (imputed)	N
1314	chr8	95578425	95578426	rs10111287	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	8q22.1	NR	rs10111287-T	NR	2E-11		0.0185	[0.013-0.024] unit increase	Affymetrix [9000000] (imputed)	N
1314	chr8	95582605	95582606	rs12680842	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	8q22.1		rs12680842-?	NR	3E-11				NR [~ 8900000] (imputed)	N
1314	chr8	95582605	95582606	rs12680842	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	8q22.1	NA	rs12680842-A	0.6839	3E-16		0.0142	[0.011-0.018] unit increase	NR [~ 27400000] (imputed)	N
1314	chr8	95582605	95582606	rs12680842	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	8q22.1	KIAA1429, LOC100288748	rs12680842-G	0.39	2E-11		0.016	[0.012-0.02] unit decrease	Illumina [6108953] (imputed)	N
1314	chr8	95582605	95582606	rs12680842	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	8q22.1	KIAA1429	rs12680842-A	0.666	3E-6		0.015	[0.0085-0.0211] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1314	chr8	95582654	95582655	rs12680855	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	8q22.1	KIAA1429	rs12680855-A	0.6826	2E-8		0.002	[0.0014-0.0026] unit decrease	Affymetrix [15275733] (imputed)	N
1314	chr8	95589339	95589340	rs4735297	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	8q22.1		rs4735297-A	0.6741	2E-8		0.0086	[0.0057-0.0115] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1314	chr8	95589339	95589340	rs4735297	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	8q22.1	Intergenic	rs4735297-A	0.6741	5E-9	(MTAG)	0.0083	[0.0056-0.011] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1314	chr8	95595161	95595162	rs2114210	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		8q22.1	KIAA1429	rs2114210-G	0.664094	1E-11		0.00986173	[0.007-0.0127] unit decrease	Affymetrix [12370749]	N
1314	chr8	95599007	95599008	rs58534698	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	8q22.1		rs58534698-G	NR	3E-18		0.0151	[0.012-0.018] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1314	chr8	95613925	95613926	rs9642928	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	8q22.1		rs9642928-A	0.3261	5E-8	(conditional-joint)	0.0083	[0.0054-0.0112] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1314	chr8	95624106	95624107	rs12678226	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	8q22.1	NR	rs12678226-?	NR	2E-11				Affymetrix [~ 8270000] (imputed)	N
1314	chr8	95629748	95629749	rs75072578	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	8q22.1	NR	rs75072578-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1314	chr8	95631554	95631555	rs72674898	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	8q22.1		rs72674898-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1314	chr8	95635332	95635333	rs117966288	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Abstraction and mental flexibility	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	8q22.1	ESRP1	rs117966288-A	NR	6E-6		0.54783386	[0.31-0.79] unit decrease	Illumina [> 6200000] (imputed)	N
1314	chr8	95654627	95654628	rs7826830	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	8q22.1	NR	rs7826830-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
1314	chr8	95659635	95659636	rs4247284	34593835	Takahashi Y	2021-09-30	Sci Rep	A genome-wide association study identifies a novel candidate locus at the DLGAP1 gene with susceptibility to resistant hypertension in the Japanese population.	Resistant hypertension	2,705 Japanese ancestry cases, 21,296 Japanese ancestry controls	NA	8q22.1		rs4247284-CA	0.245	9E-7		0.85	[0.8-0.91]	Illumina [7199488] (imputed)	N
1314	chr8	95678311	95678312	rs10956924	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	8q22.1	ESRP1	rs10956924-T	0.2793	2E-8		0.023868	[0.016-0.032] mg/dL decrease	Affymetrix, Illumina [8217339] (imputed)	N
1315	chr8	95685146	95685147	rs11786992	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	8q22.1	TP53INP1	rs11786992-A	0.644	5E-6		1.03	[1.02-1.04]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1315	chr8	95696129	95696130	rs2722885	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	8q22.1	NR	rs2722885-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
1315	chr8	95701884	95701885	rs2554401	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	8q22.1	NR	rs2554401-A	0.25	4E-6	(IFNalpha_STAT1_of_CD20p)			Illumina [5084123] (imputed)	N
1315	chr8	95736478	95736479	rs28523271	34624637	Zainul Abidin FN	2021-09-21	Neuroimage Clin	Glucose hypometabolism in the Auditory Pathway in Age Related Hearing Loss in the ADNI cohort.	Age related hearing loss-related regional glucose metabolism (Bilateral Heschl's gyrus)	228 European ancestry cases, 587 European ancestry controls	NA	8q22.1		rs28523271-?	NR	9E-6		0.475	[0.27-0.68] unit decrease	Illumina [5082878] (imputed)	N
1315	chr8	95739641	95739642	rs67763258	33290408	Ray D	2020-12-08	PLoS Genet	A powerful method for pleiotropic analysis under composite null hypothesis identifies novel shared loci between Type 2 Diabetes and Prostate Cancer.	Type 2 diabetes or prostate cancer (pleiotropy)	62,892 European ancestry T2D cases, 79,194 European ancestry PrCa cases, 659,536 European ancestry controls	NA	8q22.1	DPY19L4	rs67763258-?		2E-8				Illumina [5041948] (imputed)	N
1315	chr8	95746832	95746833	rs7815731	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls, 49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	8q22.1		rs7815731-G	NR	5E-8		0.0331	[0.021-0.045] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1316	chr8	95837669	95837670	rs7459499	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	8q22.1		rs7459499-A	NR	1E-8		0.0097	[0.0064-0.013] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
1316	chr8	95851817	95851818	rs78727559	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	8q22.1	INTS8	rs78727559-G	0.060736	4E-12		0.029173	[0.021-0.038] unit increase	Affymetrix [93095623] (imputed)	N
1316	chr8	95851817	95851818	rs78727559	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	8q22.1	INTS8	rs78727559-G	0.060725	2E-12		0.032459326	[0.023-0.042] unit increase	Affymetrix [93095623] (imputed)	N
1316	chr8	95854288	95854289	rs775967694	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	8q22.1	NR	rs775967694-D	0.060841	2E-11		0.028005	[0.02-0.036] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
1316	chr8	95854288	95854289	rs775967694	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	8q22.1	NR	rs775967694-D	0.060833	1E-11		0.028447	[0.02-0.037] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
1316	chr8	95856910	95856911	rs17359493	25102180	Ng MC	2014-08-07	PLoS Genet	Meta-analysis of genome-wide association studies in African Americans provides insights into the genetic architecture of type 2 diabetes.	Type 2 diabetes	8,284 African American cases, 15,543 African American controls	6,061 African American cases, 5,483 African American controls, 8,130 European ancestry cases, 38,987 European ancestry controls	8q22.1	INTS8	rs17359493-G	0.22	1E-7	(AA)	1.13	[1.08-1.18]	Affymetrix, Illumina [2579389] (imputed)	N
1316	chr8	95856910	95856911	rs17359493	25102180	Ng MC	2014-08-07	PLoS Genet	Meta-analysis of genome-wide association studies in African Americans provides insights into the genetic architecture of type 2 diabetes.	Type 2 diabetes	8,284 African American cases, 15,543 African American controls	6,061 African American cases, 5,483 African American controls, 8,130 European ancestry cases, 38,987 European ancestry controls	8q22.1	INTS8	rs17359493-G	0.22	1E-7		1.1	[1.06-1.13]	Affymetrix, Illumina [2579389] (imputed)	N
1316	chr8	95874207	95874208	rs143773045	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	8q22.1		rs143773045-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1316	chr8	95887224	95887225	rs10100651	31606302	Schijven D	2019-10-09	Eur Neuropsychopharmacol	Multivariate genome-wide analysis of stress-related quantitative phenotypes.	Stress-related phenotypes (multivariate analysis)	583 European and other ancestry individuals	NA	8q22.1	NR	rs10100651-C	NR	1E-8	(mental health and PTSD symptom scores; plasma levels of DHEA-S, GABA, NPY and SHBG)			Illumina [5361288] (imputed)	N
1316	chr8	95888798	95888799	rs6985452	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	8q22.1		rs6985452-C	NR	3E-9		0.0298	[0.02-0.04] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
1316	chr8	95888798	95888799	rs6985452	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	8q22.1		rs6985452-C	NR	1E-8		0.0285	[0.019-0.038] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
1316	chr8	95903063	95903064	rs28399563	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Tumor necrosis factor receptor 2 levels	21,758 European ancestry individuals	9,173 individuals	8q22.1		rs28399563-A	0.19	5E-6		0.0453	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1316	chr8	95911476	95911477	rs12546365	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	8q22.1		rs12546365-C	NR	5E-9		0.0381	[0.025-0.051] unit decrease	Affymetrix, Illumina [25845091] (imputed)	N
1316	chr8	95929201	95929202	rs12548367	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	8q22.1	TP53INP1	rs12548367-T	0.7624	4E-7	(East Asian)	0.0341	[0.021-0.047] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1316	chr8	95929201	95929202	rs12548367	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	8q22.1	TP53INP1	rs12548367-T	0.6792	4E-13		0.0238	[0.017-0.03] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1316	chr8	95929201	95929202	rs12548367	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	8q22.1	TP53INP1	rs12548367-T	0.6594	1E-7		0.021147	[0.013-0.029] mg/dL increase	Affymetrix, Illumina [8217339] (imputed)	N
1316	chr8	95929201	95929202	rs12548367	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	8q22.1	NR	rs12548367-T	0.6947	2E-11	(men)	0.0355	[0.025-0.046] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1316	chr8	95934906	95934907	rs2515236	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	8q22.1	NR	rs2515236-G	NR	9E-10		0.0156	[0.011-0.02] unit increase	Affymetrix [9000000] (imputed)	N
1316	chr8	95935163	95935164	rs12548874	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	8q22.1	TP53INP1	rs12548874-A		4E-16		0.018	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
1316	chr8	95935163	95935164	rs12548874	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	8q22.1	NDUFAF6	rs12548874-A	0.4682	6E-9		0.0207665	[0.014-0.028] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1316	chr8	95937501	95937502	rs7845219	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	8q22.1	TP53INP1	rs7845219-C	0.49278585092858	5E-9		0.0422	[0.028-0.056] unit decrease	NR [5035015] (imputed)	N
1316	chr8	95937501	95937502	rs7845219	24509480	Mahajan A	2014-02-09	Nat Genet	Genome-wide trans-ancestry meta-analysis provides insight into the genetic architecture of type 2 diabetes susceptibility.	Type 2 diabetes	12,171 European ancestry cases, 56,862 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls	21,491 European ancestry cases, 55,647 European ancestry controls	8q22.1	TP53INP1	rs7845219-T	0.53	6E-8		1.08	[1.04-1.12]	Affymetrix, Illumina [2500000] (imputed)	N
1316	chr8	95937501	95937502	rs7845219	22885922	Morris AP	2012-09-01	Nat Genet	Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes.	Type 2 diabetes	6,377 European ancestry male cases, 5,794 European ancestry female cases, 22,243 European ancestry male controls, 34,619 European ancestry female controls	12,938 European ancestry male cases, 8,553 European ancestry female cases, 904 Pakistani ancestry male cases, 274 Pakistani ancestry female cases, 30,273 European ancestry male controls, 25,374 European ancestry female controls, 2,088 Pakistani ancestry male controls, 384 Pakistani ancestry female controls	8q22.1	TP53INP1	rs7845219-T	NR	7E-6	(men)	1.07	[1.04-1.10]	Affymetrix, Illumina [up to 2500000] (imputed)	N
1316	chr8	95937501	95937502	rs7845219	22885922	Morris AP	2012-09-01	Nat Genet	Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes.	Type 2 diabetes	6,377 European ancestry male cases, 5,794 European ancestry female cases, 22,243 European ancestry male controls, 34,619 European ancestry female controls	12,938 European ancestry male cases, 8,553 European ancestry female cases, 904 Pakistani ancestry male cases, 274 Pakistani ancestry female cases, 30,273 European ancestry male controls, 25,374 European ancestry female controls, 2,088 Pakistani ancestry male controls, 384 Pakistani ancestry female controls	8q22.1	TP53INP1	rs7845219-T	0.52252758480133	5E-6		1.06	[1.03-1.08]	Affymetrix, Illumina [up to 2500000] (imputed)	N
1317	chr8	95946159	95946160	rs62523081	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	8q22.1		rs62523081-A	NR	1E-11		0.0148	[0.01-0.019] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
1317	chr8	95946159	95946160	rs62523081	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	8q22.1	TP53INP1	rs62523081-G	0.638665	5E-32		0.00621619	[0.0052-0.0073] unit decrease	Affymetrix [13995440] (imputed)	N
1317	chr8	95949665	95949666	rs113910919	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	8q22.1		rs113910919-G	NR	1E-21		0.0282	[0.023-0.034] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
1317	chr8	95955073	95955074	rs4735333	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	8q22.1	NDUFAF6, TP53INP1	rs4735333-A	0.494439	1E-19		0.020546537	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1317	chr8	95959807	95959808	rs896855	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	8q22.1		rs896855-G	NR	7E-19		0.0168	[0.013-0.021] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
1317	chr8	95960510	95960511	rs896854	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	8q22.1		rs896854-C	NR	8E-13		0.0148	[0.011-0.019] unit decrease	Affymetrix, Illumina [20535873] (imputed)	N
1317	chr8	95960510	95960511	rs896854	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	200,622 European ancestry individuals	NA	8q22.1	TP53INP1	rs896854-T	0.5012	6E-9		0.0099	[0.0068-0.013] unit increase	Affymetrix, Illumina [34064007] (imputed)	N
1317	chr8	95960510	95960511	rs896854	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	8q22.1		rs896854-T	0.4973	4E-8		0.12156169	[0.078-0.165] mmHg increase	Affymetrix, Illumina [242865] (imputed)	N
1317	chr8	95960510	95960511	rs896854	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals, 21,077 African American individuals, 33,689 South Asian ancestry individuals, 4,586 Hispanic individuals	354,096 European ancestry individuals, 63,282 African American individuals, 4,792 East Asian ancestry individuals, 22,802 Hispanic individuals, 2,695 Native American ancestry individuals	8q22.1		rs896854-T	0.5052	3E-8		0.08215139	[0.053-0.111] mmHg increase	Affymetrix, Illumina [247315] (imputed)	N
1317	chr8	95960510	95960511	rs896854	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	8q22.1		rs896854-?	NR	3E-11				NR [~ 8900000] (imputed)	N
1317	chr8	95960510	95960511	rs896854	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	8q22.1	TP53INP1	rs896854-C	0.5398	2E-6		0.038	[0.022-0.054] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1317	chr8	95960510	95960511	rs896854	20581827	Voight BF	2010-06-27	Nat Genet	Twelve type 2 diabetes susceptibility loci identified through large-scale association analysis.	Type 2 diabetes	8,130 European ancestry cases, 38,987 European ancestry controls	Up to 34,412 European ancestry cases, 59,925 European ancestry controls	8q22.1	TP53INP1	rs896854-T		1E-9		1.06	[1.04-1.09]	Affymetrix, Illumina [2426886] (imputed)	N
1317	chr8	95960766	95960767	rs1320164	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Type 2 diabetes	approximately 459,000 European ancestry individuals	NA	8q22.1		rs1320164-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1317	chr8	95960885	95960886	rs896852	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	8q22.1	TP53INP1	rs896852-G	0.3	6E-9		1.04	[1.03-1.06]	Affymetrix, Illumina [11800000] (imputed)	N
1317	chr8	95961625	95961626	rs10097617	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	8q22.1	NR	rs10097617-C	0.5196	2E-16		0.0374	[0.029-0.046] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
1317	chr8	95961625	95961626	rs10097617	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	8q22.1	TP53INP1	rs10097617-T	0.4847	3E-11		1.04	[1.03-1.06]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1317	chr8	95961793	95961794	rs10108430	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA			rs10108430-?	NR	2E-8		0.00513533	[0.0034-0.0069] unit increase	NR [NR]	N
1317	chr8	95961793	95961794	rs10108430	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs10108430-C	0.508434	4E-23		0.0857939	[0.068-0.104] decrease	Affymetrix [11014269] (imputed)	N
1317	chr8	95965694	95965695	rs13257021	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	8q22.1	NR	rs13257021-A	0.470442	7E-10		0.0190629	[0.013-0.025] unit decrease	NR [19129689] (imputed)	N
1317	chr8	95967371	95967372	rs10808671	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	8q22.1	NR	rs10808671-G	0.5407	2E-21		0.0358	[0.028-0.043] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1317	chr8	95967837	95967838	rs481887	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	8q22.1		rs481887-?	NR	3E-10				NR [~ 8900000] (imputed)	N
1317	chr8	95969256	95969257	rs4582532	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	8q22.1	NDUFAF6	rs4582532-A	0.5067	2E-8		0.0966	[0.063-0.131] unit decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1317	chr8	95969321	95969322	rs10429294	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	8q22.1		rs10429294-T	NR	4E-30		0.0205	[0.017-0.024] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
1317	chr8	95969321	95969322	rs10429294	29760442	Iglesias AI	2018-05-14	Nat Commun	Cross-ancestry genome-wide association analysis of corneal thickness strengthens link between complex and Mendelian eye diseases.	Central corneal thickness	17,803 European ancestry individuals, 8,107 Asian ancestry individuals	NA	8q22.1	NDUFAF6	rs10429294-T	0.56	3E-10		2.02	[1.39-2.65] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1317	chr8	95969444	95969445	rs9297949	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	8q22.1	TP53INP1, NDUFAF6	rs9297949-A	0.4714	2E-11		0.09	[0.062-0.118] unit decrease	Affymetrix [~ 11900000] (imputed)	N
1317	chr8	95970238	95970239	rs1453379	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	129,405 East Asian ancestry individuals	NA	8q22.1		rs1453379-C	0.732884	3E-10		0.0253814	[0.018-0.033] unit increase	Illumina [13475706] (imputed)	N
1317	chr8	95970238	95970239	rs1453379	33649486	Hardcastle AJ	2021-03-01	Commun Biol	A multi-ethnic genome-wide association study implicates collagen matrix integrity and cell differentiation pathways in keratoconus.	Keratoconus	2,116 European ancestry cases, 24,626 European ancestry controls	1, 389 European ancestry cases, 79,727 European ancestry controls, 759 South Asian ancestry cases, 8,009 South Asian ancestry controls, 405 African ancestry cases, 4,185 African ancestry controls	8q22.1	TP53INP1, CCNE2, INTS8, NDUFAF6	rs1453379-T	NR	3E-10		0.156	[0.11-0.21] unit increase	Affymetrix [7701190] (imputed)	N
1317	chr8	95971919	95971920	rs2011567	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	8q22.1		rs2011567-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1317	chr8	95972550	95972551	rs896847	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	8q22.1	TP53INP1, NDUFAF6	rs896847-G	0.472	6E-12		0.092	[0.065-0.119] unit decrease	Affymetrix [~ 11900000] (imputed)	N
1317	chr8	95973815	95973816	rs574183	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	8q22.1	NR	rs574183-G	0.388961	1E-11		0.013813	[0.0098-0.0178] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
1317	chr8	95974797	95974798	rs7815762	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	8q22.1	NR	rs7815762-A	0.49	2E-6		0.93	[0.91-0.95]	Illumina [8468885] (imputed)	N
1317	chr8	95974960	95974961	rs7823059	32528159	Choquet H	2020-06-11	Commun Biol	A multiethnic genome-wide analysis of 44,039 individuals identifies 41 new loci associated with central corneal thickness.	Central corneal thickness	32,292 European ancestry individuals, 9,623 East Asian ancestry individuals, 1,367 Hispanic/Latino individuals, 757 African American  individuals	NA	8q22.1	NDUFAF6	rs7823059-?	NA	1E-14		1.83	[1.36-2.3] unit decrease	Affymetrix [5541230] (imputed)	N
1317	chr8	95975079	95975080	rs7835379	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals	at least 101,293 European ancestry individuals	8q22.1	TP53INP1, NDUFAF6	rs7835379-A	0.755	7E-12	(Japanese)	0.032	[0.022-0.042] unit increase	Illumina [5864938] (imputed)	N
1317	chr8	95975079	95975080	rs7835379	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum uric acid levels	109,029 Japanese ancestry individuals	NA	8q22.1	TP53INP1, NDUFAF6	rs7835379-?	NR	8E-10		0.0303	[0.021-0.04] unit increase novel	Illumina [6108953] (imputed)	N
1317	chr8	95976250	95976251	rs4735340	30820047	Kunkle BW	2019-02-28	Nat Genet	Genetic meta-analysis of diagnosed Alzheimer's disease identifies new risk loci and implicates A?, tau, immunity and lipid processing.	Alzheimer's disease (late onset)	21,982 European ancestry cases, 41,944 European ancestry controls	up to 13,292 European ancestry cases, up to 17,219 European ancestry controls	8q22.1	NDUFAF6	rs4735340-T	0.524	9E-8		1.0638298	[1.04-1.09]	Affymetrix, Illumina [11480632] (imputed)	N
1317	chr8	95980707	95980708	rs6982393	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	8q22.1	NR	rs6982393-T	0.47	5E-25		0.0189	[0.015-0.023] unit decrease	NR [NR]	N
1317	chr8	95985702	95985703	rs190998357	33597122	Verbitsky M	2021-02-17	J Am Soc Nephrol	Copy Number Variant Analysis and Genome-wide Association Study Identify Loci with Large Effect for Vesicoureteral Reflux.	Vesicoureteral reflux	1,395 European ancestry cases, 5,366 European ancestry controls	NA	8q22.1	NR	rs190998357-G	0.1283	8E-7	(additive, male)	1.8303368	[1.43936781524403-2.32750295553333]	Affymetrix, Illumina [6131010] (imputed)	N
1317	chr8	95985870	95985871	rs13270641	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q22.1	NR	rs13270641-T	0.546335	2E-35				Affymetrix, Illumina [24653286] (imputed)	N
1317	chr8	95985870	95985871	rs13270641	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	8q22.1	NR	rs13270641-T	0.510013	1E-36		0.023664	[0.02-0.027] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
1317	chr8	95985908	95985909	rs10081474	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	8q22.1		rs10081474-A	NR	9E-9		0.0095	[0.0064-0.0126] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
1317	chr8	95986926	95986927	rs10086284	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	8q22.1	NDUFAF6	rs10086284-A	0.3113	1E-8		0.1197	[0.079-0.161] mmHg increase	Affymetrix [NR] (imputed)	N
1317	chr8	95988208	95988209	rs6983948	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q22.1	NR	rs6983948-T	0.553142	4E-11				Affymetrix, Illumina [19872809] (imputed)	N
1317	chr8	95992019	95992020	rs10098778	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	8q22.1	NR	rs10098778-T	0.510439	9E-19		0.016422	[0.013-0.02] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1317	chr8	95992019	95992020	rs10098778	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q22.1	NR	rs10098778-T	0.544427	8E-34				Affymetrix, Illumina [24558453] (imputed)	N
1317	chr8	95992019	95992020	rs10098778	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	8q22.1	NR	rs10098778-T	0.510396	1E-35		0.023072	[0.019-0.027] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
1317	chr8	95992019	95992020	rs10098778	31473137	Moreno-Grau S	2019-08-13	Alzheimers Dement	Genome-wide association analysis of dementia and its clinical endophenotypes reveal novel loci associated with Alzheimer's disease and three causality networks: The GR@ACE project.	Alzheimer's disease	4,120 Spanish ancestry cases, 17,008 cases, 3,289 Spanish ancestry controls, 37,154 controls	1,943 Spanish ancestry cases, 8,572 cases, 3,016 Spanish ancestry controls, 11,312 controls	8q22.1	TP53INP1, NDUFAF6	rs10098778-?	NR	2E-8		1.0638298	[1.04-1.09]	Affymetrix [up to 7055881] (imputed)	N
1317	chr8	95992472	95992473	rs10956934	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	8q22.1	NDUFAF6	rs10956934-A	0.484329	3E-13		0.016078077	[0.012-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1317	chr8	95992472	95992473	rs10956934	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	8q22.1	NDUFAF6	rs10956934-A	0.484342	3E-29		0.024898026	[0.021-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
1317	chr8	95992472	95992473	rs10956934	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	8q22.1	NDUFAF6	rs10956934-A	0.484346	5E-29		0.02477349	[0.02-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
1317	chr8	95997164	95997165	rs61596977	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	8q22.1	NDUFAF6	rs61596977-C	0.859636	4E-9		0.0161666	[0.011-0.022] unit increase	Affymetrix [NR] (imputed)	N
1317	chr8	95997164	95997165	rs61596977	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	8q22.1	NDUFAF6	rs61596977-C	0.859622	4E-8		0.0154721	[0.0099-0.021] unit increase	Affymetrix [NR] (imputed)	N
1317	chr8	96020399	96020400	rs7812312	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	8q22.1	TP53INP1, NDUFAF6	rs7812312-?	NR	2E-10		0.603	[0.41-0.8] unit increase	Affymetrix [11100000] (imputed)	N
1317	chr8	96021442	96021443	rs28616734	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	8q22.1		rs28616734-T	NR	2E-11		0.023	[0.016-0.03] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1317	chr8	96024081	96024082	rs7818688	25710658	Diouf B	2015-02-24	JAMA	Association of an inherited genetic variant with vincristine-related peripheral neuropathy in children with acute lymphoblastic leukemia.	Vincristine-induced peripheral neuropathy in acute lymphoblastic leukemia	53 European ancestry cases with peripheral neuropathy, 156 cases without peripheral neuropathy, 10 African ancestry cases with peripheral neuropathy, 33 African ancestry cases without peripheral neuropathy, 1 Asian ancestry case with peripheral neuropathy, 1 Asian ancestry case without peripheral neuropathy, 14 Hispanic cases with peripheral neuropathy, 30 Hispanic cases without peripheral neuropathy, 8 cases with peripheral neuropathy, 15 cases without peripheral neuropathy	NA	8q22.1	NDUFAF6	rs7818688-?	NR	4E-8		4.26	[2.45-7.42]	Affymetrix [1576016] (imputed)	N
1317	chr8	96027305	96027306	rs2599723	31932636	Hebbar P	2020-01-13	Sci Rep	Genome-wide association study identifies novel risk variants from RPS6KA1, CADPS, VARS, and DHX58 for fasting plasma glucose in Arab population.	Fasting plasma glucose	1,353 Arab ancestry individuals	1,176 Arab ancestry individuals	8q22.1	NDUFAF6	rs2599723-G	NR	1E-6		4.858	[NR] unit increase	Illumina [632375]	N
1317	chr8	96028896	96028897	rs7842703	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	8q22.1	NDUFAF6	rs7842703-C	0.128934	4E-6		1.05	[1.03-1.08]	NR [8126035] (imputed)	N
1317	chr8	96046093	96046094	rs2678823	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	8q22.1		rs2678823-A	NR	8E-21		0.0227	[0.018-0.027] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
1317	chr8	96053784	96053786	rs546539574	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	8q22.1		rs546539574-G	NR	2E-14		0.0186	[0.014-0.023] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
1317	chr8	96053999	96054000	rs7818382	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	8q22.1	NR	rs7818382-T	NR	3E-9		0.015	[0.01-0.02] unit increase	Affymetrix [9000000] (imputed)	N
1317	chr8	96053999	96054000	rs7818382	24162737	Lambert JC	2013-10-27	Nat Genet	Meta-analysis of 74,046 individuals identifies 11 new susceptibility loci for Alzheimer's disease.	Alzheimer's disease (late onset)	17,008 European ancestry cases, 37,154 European ancestry controls	8,572 European ancestry cases, 11,312 European ancestry controls	8q22.1	NDUFAF6	rs7818382-T	0.469	8E-8		1.07	[1.04-1.10]	Illumina [7055881] (imputed)	N
1317	chr8	96056804	96056805	rs2599713	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	8q22.1	NDUFAF6	rs2599713-C		1E-12		0.019	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
1317	chr8	96065877	96065878	rs9297952	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Systolic blood pressure (long-term average)	5,304 African American individuals	6,500 African American individuals	8q22.1	NR	rs9297952-A	0.9292	4E-7		1.9686	[1.21-2.73] mmHg increase	Affymetrix, Illumina [NR] (imputed)	N
1317	chr8	96072195	96072196	rs2599711	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q22.1	NR	rs2599711-A	0.82813	5E-17				Affymetrix, Illumina [24332387] (imputed)	N
1317	chr8	96072195	96072196	rs2599711	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	8q22.1		rs2599711-?	NR	6E-17				NR [~ 8900000] (imputed)	N
1317	chr8	96074901	96074902	rs11779506	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	8q22.1	NR	rs11779506-C	NR	4E-12		0.022	[0.016-0.028] unit increase	Affymetrix [9000000] (imputed)	N
1318	chr8	96076927	96076933	rs369492940	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	8q22.1		rs369492940-T	NR	1E-8		0.0163	[0.011-0.022] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
1318	chr8	96092045	96092046	rs28416970	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	8q22.1		rs28416970-A	NR	4E-10		0.0158	[0.011-0.021] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
1318	chr8	96092045	96092046	rs28416970	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	8q22.1	NDUFAF6	rs28416970-G	0.730812	3E-11		0.00289412	[0.002-0.0038] unit decrease	Affymetrix [13995440] (imputed)	N
1318	chr8	96092421	96092422	rs187936726	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	8q22.1	TP53INP1	rs187936726-G	0.0239	5E-6		1.11	[1.06-1.16]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1318	chr8	96105859	96105860	rs4321970	29460428	Gelernter J	2018-02-20	Alcohol Clin Exp Res	Genomewide association study of alcohol dependence and related traits in a Thai population.	Alcohol dependence symptom count	1,045 Thai ancestry individuals	NA	8q22.1	NDUFAF6	rs4321970-A	0.6625	8E-6		0.5075	[0.28-0.73] unit decrease	Illumina [at least 4683137] (imputed)	N
1318	chr8	96106036	96106037	rs4590408	23319000	Luykx JJ	2013-01-15	Mol Psychiatry	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA-5-HIAA Factor score)	up to 398 European ancestry individuals	NA	8q22.1	C8orf38	rs4590408-G		6E-6		0.2255	unit increase	Illumina [5767231] (imputed)	N
1318	chr8	96106036	96106037	rs4590408	23319000	Luykx JJ	2013-01-15	Mol Psychiatry	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA)	up to 398 European ancestry individuals	NA	8q22.1	C8orf38	rs4590408-G	NR	6E-6		0.2245	unit increase	Illumina [5767231] (imputed)	N
1318	chr8	96120071	96120072	rs4392868	20923822	Niu N	2010-10-05	Genome Res	Radiation pharmacogenomics: a genome-wide association approach to identify radiation response biomarkers using human lymphoblastoid cell lines.	Radiation response	93 African American human lymphoblastoid cell lines, 89 European ancestry human lymphoblastoid cell lines, 95 Han Chinese ancestry human lymphoblastoid cell lines	NA	8q22.1	PLEKHF2	rs4392868-?	0.09	8E-6				Affymetrix, Illumina [1348798]	N
1318	chr8	96127029	96127030	rs7000734	20923822	Niu N	2010-10-05	Genome Res	Radiation pharmacogenomics: a genome-wide association approach to identify radiation response biomarkers using human lymphoblastoid cell lines.	Radiation response	93 African American human lymphoblastoid cell lines, 89 European ancestry human lymphoblastoid cell lines, 95 Han Chinese ancestry human lymphoblastoid cell lines	NA	8q22.1	PLEKHF2	rs7000734-?	0.08	4E-7				Affymetrix, Illumina [1348798]	N
1318	chr8	96194736	96194737	rs10956941	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	8q22.1		rs10956941-G	0.246625	2E-17		0.022363488	[0.017-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1319	chr8	96208725	96208726	rs4484658	26025128	Park HW	2015-05-27	J Allergy Clin Immunol	Genetic risk factors for decreased bone mineral accretion in children with asthma receiving multiple oral corticosteroid bursts.	Bone mineral accretion in asthma (oral corticosteroid dose interaction)	489 European ancestry children	NA	8q22.1	intergenic	rs4484658-?		8E-8				Illumina [NR]	N
1319	chr8	96223792	96223793	rs62522646	32902719	Hebbar P	2020-09-09	Hum Genet	Genome-wide landscape establishes novel association signals for metabolic traits in the Arab population.	Low density lipoprotein cholesterol levels	2,732 Kuwaiti ancestry individuals	NA	8q22.1	KB-1047C11.2, C8orf37-AS1	rs62522646-?	NR	1E-7		5.309	NR unit increase	Illumina [up to 1520000] (imputed)	N
1319	chr8	96229493	96229494	rs74306623	33232274	Mohammadnejad A	2020-11-24	Aging (Albany NY)	Generalized correlation coefficient for genome-wide association analysis of cognitive ability in twins.	Cognitive function (generalized correlation coefficient)	900 Danish ancestry dizygotic twins, 272 Danish ancestry monozygotic twins	NA	8q22.1	NR	rs74306623-?	NR	5E-7			[NR]	Illumina [5779266] (imputed)	N
1319	chr8	96235914	96235915	rs187788879	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (executive function) x major depressive disorder interaction (2df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	8q22.1		rs187788879-T	0.01	7E-11				NR [NR] (imputed)	N
1319	chr8	96237950	96237951	rs199963695	34337005	Duan H	2021-07-17	Biomed Res Int	A Genome-Wide Association Study of Age-Related Hearing Impairment in Middle- and Old-Aged Chinese Twins.	Hearing function (2 kHz)	131 Chinese ancestry dizygotic twin pairs	NA	8q22.1		rs199963695-?	NR	8E-6				Illumina [1365315]	N
1319	chr8	96292040	96292041	rs55821258	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	8q22.1	NR	rs55821258-?	NR	2E-8		0.2167	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1319	chr8	96293102	96293103	rs112505062	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	8q22.1	NR	rs112505062-?	NR	4E-6	(Latino)	0.3738	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1319	chr8	96321520	96321521	rs16917459	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (executive function) x major depressive disorder interaction (1df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	8q22.1		rs16917459-A	0.01	1E-6		1.06	[0.63-1.49] unit decrease	NR [NR] (imputed)	N
1320	chr8	96370199	96370200	rs62524444	29855537	Hirata T	2018-05-31	Sci Rep	Japanese GWAS identifies variants for bust-size, dysmenorrhea, and menstrual fever that are eQTLs for relevant protein-coding or long non-coding RNAs.	Menstruation quality of life impact (increased appetite)	760 Japanese ancestry female cases, 4,974 Japanese ancestry female controls	903 Japanese ancestry female cases, 4,711 Japanese ancestry female controls	8q22.1	NR	rs62524444-C	0.102326688	6E-6		0.26506448	[0.15-0.38] unit increase	Affymetrix [536506]	N
1320	chr8	96417184	96417185	rs7825742	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	8q22.1		rs7825742-?	NR	1E-15				NR [~ 8900000] (imputed)	N
1320	chr8	96418496	96418497	rs6997004	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	8q22.1		rs6997004-G	NR	1E-9		0.0121	[0.0082-0.016] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1320	chr8	96448588	96448589	rs145478122	29317602	Hall LS	2018-01-10	Transl Psychiatry	Genome-wide meta-analyses of stratified depression in Generation Scotland and UK Biobank.	Major depressive disorder	6,997 European ancestry female cases, 16,172 European ancestry female controls, 3,852 European ancestry male cases, 16,034 European ancestry male controls	NA	8q22.1	C8orf37-AS1	rs145478122-A	NR	9E-6		0.3	[0.16-0.44] unit decrease	Affymetrix, Illumina [7105178] (imputed)	N
1320	chr8	96451434	96451435	rs74864598	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	8q22.1	NR	rs74864598-?	NR	1E-6		5.793	NR unit increase	Affymetrix [at least 600000] (imputed)	N
1320	chr8	96451827	96451828	rs16917667	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	8q22.1	NR	rs16917667-?	NR	1E-6		5.793	NR unit increase	Affymetrix [at least 600000] (imputed)	N
1320	chr8	96451827	96451828	rs16917667	29478026	Shahin MH	2018-02-24	J Am Heart Assoc	Genome-Wide Association Approach Identified Novel Genetic Predictors of Heart Rate Response to ?-Blockers.	Heart rate response to beta blockers (atenolol add-on therapy)	198 European American hypertensive individuals, 127 African American hypertensive individuals	NA	8q22.1	NR	rs16917667-G	0.93	1E-7	(AA)	8.83	[5.77-11.89] bpm decrease	Illumina [at least 1100000] (imputed)	N
1320	chr8	96452851	96452852	rs1392797	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	8q22.1	NR	rs1392797-?	NR	3E-6		5.467	NR unit increase	Affymetrix [at least 600000] (imputed)	N
1320	chr8	96452851	96452852	rs1392797	29478026	Shahin MH	2018-02-24	J Am Heart Assoc	Genome-Wide Association Approach Identified Novel Genetic Predictors of Heart Rate Response to ?-Blockers.	Heart rate response to beta blockers (atenolol add-on therapy)	198 European American hypertensive individuals, 127 African American hypertensive individuals	NA	8q22.1	NR	rs1392797-C	0.91	4E-6	(AA)	7.17	[4.29-10.05] bpm decrease	Illumina [at least 1100000] (imputed)	N
1320	chr8	96467047	96467048	rs116454494	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	8q22.1	NR	rs116454494-?	NR	4E-6		5.335	NR unit increase	Affymetrix [at least 600000] (imputed)	N
1320	chr8	96467348	96467349	rs78897914	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	8q22.1	NR	rs78897914-?	NR	3E-6		5.455	NR unit increase	Affymetrix [at least 600000] (imputed)	N
1321	chr8	96469786	96469787	rs16917715	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	8q22.1	NR	rs16917715-?	NR	3E-6		5.455	NR unit increase	Affymetrix [at least 600000] (imputed)	N
1321	chr8	96485377	96485378	rs1500894	31430377	Chung J	2019-08-20	Brain	Genome-wide association study of cerebral small vessel disease reveals established and novel loci.	Non-lobar intracerebral hemorrhage (MTAG)	at least 1,005 European ancestry cases, at least 1,711 European ancestry controls	NA	8q22.1	Intergenic	rs1500894-?	NR	8E-6		1.14	[1.07-1.21]	Affymetrix, Illumina [39235000] (imputed)	N
1321	chr8	96504471	96504472	rs77742018	23568457	Wade TD	2013-04-09	Int J Eat Disord	Genetic variants associated with disordered eating.	Anorexia nervosa	237 European ancestry female cases, 2,287 European ancestry female controls	NA	8q22.1	CNBD1	rs77742018-A	0.946	4E-6		0.117	[0.068-0.166] unit decrease	Illumina [6150213] (imputed)	N
1321	chr8	96506121	96506122	rs3133731	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	8q22.1		rs3133731-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1321	chr8	96515887	96515888	rs1909881	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	8q22.1	C8orf37	rs1909881-G	0.089	7E-6	(IL6 )	0.03	[NR] pg/mL increase	Illumina [899892]	N
1321	chr8	96530647	96530648	rs904924	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	8q22.1	NR	rs904924-?		4E-7	(B2M)	0.2015	[NR] unit decrease	Illumina [NR]	N
1321	chr8	96572328	96572329	rs77498369	33407418	Jonsson A	2021-01-06	BMC Med Genomics	Genome-wide association study of circulating levels of glucagon during an oral glucose tolerance test.	Glucagon levels in response to oral glucose tolerance test (30 minutes)	553 European ancestry individuals, 1,346 individuals	NA	8q22.1	NR	rs77498369-A	0.0177	6E-6		0.5693	[0.32-0.82] unit increase	Illumina [NR] (imputed)	N
1321	chr8	96595735	96595736	rs3104964	23350875	Fernandez-Rozadilla C	2013-01-26	BMC Genomics	A colorectal cancer genome-wide association study in a Spanish cohort identifies two variants associated with colorectal cancer risk at 1p33 and 8p12.	Colorectal cancer	882 European ancestry cases, 473 European ancestry controls	1,436 European ancestry cases, 1,780 European ancestry controls	8q22.1	NR	rs3104964-?	NR	4E-6		1.265	[1.144-1.398]	Affymetrix [674718]	N
1322	chr8	96619274	96619275	rs182557857	32066700	Zhang R	2020-02-05	Transl Psychiatry	Genome-wide study of immune biomarkers in cerebrospinal fluid and serum from patients with bipolar disorder and controls.	Cerebrospinal fluid immune biomarker levels	114 Scandinavian ancestry bipolar disorder cases, 83 Scandinavian ancestry controls	NA	8q22.1	C8orf37-AS1	rs182557857-T	0.012	2E-8	(sCD14)	94.392	NR unit increase	Affymetrix, Illumina [> 5600000] (imputed)	N
1322	chr8	96621167	96621168	rs3104888	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Daytime sleep phenotypes	874 European ancestry individuals	NA	8q22.1	KB-1047C11.2	rs3104888-T	NR	3E-6	(daytime napping duration, weekdays)	0.1116	[0.065-0.159] unit increase	Affymetrix [7141204] (imputed)	N
1322	chr8	96650344	96650345	rs10956974	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	8q22.1	C8orf37-AS1	rs10956974-C	0.778417	1E-29		0.0253458	[0.021-0.03] unit decrease	NR [13737936] (imputed)	N
1322	chr8	96656532	96656533	rs6415571	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	8q22.1		rs6415571-?	NR	1E-22		0.0245018	[0.02-0.029] unit increase	Affymetrix [20259828] (imputed)	N
1322	chr8	96675931	96675932	rs6471554	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	8q22.1	NR	rs6471554-?		5E-6	(IL12B)			Illumina [NR]	N
1322	chr8	96700542	96700543	rs17679410	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	8q22.1		rs17679410-?	NR	9E-28				NR [~ 8900000] (imputed)	N
1323	chr8	96758877	96758878	rs3102476	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (unclassified genus belonging to the order Clostridiales)	1,068 Japanese ancestry individuals	NA	8q22.1	KB-1047C11.2	rs3102476-T	0.29	3E-7	(female)	0.257	[0.16-0.35] unit decrease	Illumina [6380737] (imputed)	N
1323	chr8	96836175	96836176	rs34495942	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 2)	19,670 European ancestry individuals	NA	8q22.1		rs34495942-?	NR	2E-9				NR [9705931] (imputed)	N
1323	chr8	96846972	96846973	rs506767	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	8q22.1		rs506767-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1324	chr8	96866348	96866349	rs56010636	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	8q22.1	Intergenic	rs56010636-A	0.998	5E-7	(AA)	0.287	unit increase	Illumina [NR] (imputed)	N
1324	chr8	96957729	96957730	rs11784341	28632202	Witt SH	2017-06-20	Transl Psychiatry	Genome-wide association study of borderline personality disorder reveals genetic overlap with bipolar disorder, major depression and schizophrenia.	Borderline personality disorder	998 European ancestry cases, 1,545 European ancestry controls	NA	8q22.1	RP11-31K23.1	rs11784341-T	0.0118	2E-6		4.2643	[3.67-4.86]	Illumina [10736316] (imputed)	N
1324	chr8	96980543	96980544	rs12547281	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cholelithiasis	26,122 European ancestry cases, 461,431 European ancestry controls, 9,305 East Asian ancestry cases, 168,253 East Asian ancestry controls	NA	8q22.1		rs12547281-A	NR	4E-10		0.0716	[0.049-0.094] unit increase	Affymetrix, Illumina [25844936] (imputed)	N
1324	chr8	96987640	96987641	rs12334703	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8q22.1	NR	rs12334703-A	0.01394	2E-8	(ME1)	0.146	NR unit decrease	Illumina [1671387] (imputed)	N
1325	chr8	97014588	97014589	rs261562	32141793	Garman L	2020-03-06	Ocul Immunol Inflamm	Genome-Wide Association Study of Ocular Sarcoidosis Confirms HLA Associations and Implicates Barrier Function and Autoimmunity in African Americans.	Ocular sarcoidosis in sarcoidosis	260 African American cases, 513 African American controls	NA	8q22.1	NR	rs261562-T	NR	8E-6		2.45	[1.65-3.63]	Illumina [13976150] (imputed)	N
1325	chr8	97014588	97014589	rs261562	32141793	Garman L	2020-03-06	Ocul Immunol Inflamm	Genome-Wide Association Study of Ocular Sarcoidosis Confirms HLA Associations and Implicates Barrier Function and Autoimmunity in African Americans.	Ocular sarcoidosis	260 African American cases, 1,551 African American controls	NA	8q22.1	NR	rs261562-T	NR	1E-7		2.354	[1.71-3.23]	Illumina [13976150] (imputed)	N
1325	chr8	97070340	97070341	rs145048184	29109912	Rawofi L	2017-11-02	PeerJ	Genome-wide association study of pigmentary traits (skin and iris color) in individuals of East Asian ancestry.	Iris color (a* coordinate)	377 East Asian ancestry individuals	NA	8q22.1	intergenic	rs145048184-T	0.084	9E-6		0.643	[0.37-0.92] unit increase	Illumina [at least 520076] (imputed)	N
1325	chr8	97070340	97070341	rs145048184	29109912	Rawofi L	2017-11-02	PeerJ	Genome-wide association study of pigmentary traits (skin and iris color) in individuals of East Asian ancestry.	Iris color (L* coordinate)	377 East Asian ancestry individuals	NA	8q22.1	intergenic	rs145048184-T	0.0836988	6E-6		0.643007	[0.37-0.92] unit increase	Illumina [at least 520076] (imputed)	N
1325	chr8	97107949	97107950	rs10106898	29535761	Haaland OA	2018-02-26	Front Genet	A Genome-Wide Search for Gene-Environment Effects in Isolated Cleft Lip with or without Cleft Palate Triads Points to an Interaction between Maternal Periconceptional Vitamin Use and Variants in ESRRG.	Cleft lip with or without cleft palate (maternal periconceptional cigarette smoking interaction)	up to 825 European ancestry case-parent trios, up to 1,024 Asian ancestry case-parent trios, up to 59 case-parent trios	NA	8q22.1	GAPDHP30, TUBBP7	rs10106898-?		4E-6	(EA)	3.448276	[2-5.56]	Illumina [341191]	N
1326	chr8	97124771	97124772	rs778895127	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-to-hip ratio adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,049 whole genome sequenced individuals, 29,518 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,001 Mylopotamos (founder/genetic isolate) individuals, 867 Pomak (founder/genetic isolate) individuals	206,045 European ancestry individuals	8q22.1	RP11-44N17.2	rs778895127-A	0.0013	9E-6		0.7327	[0.41-1.06] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1326	chr8	97136851	97136852	rs113347955	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	8q22.1	NR	rs113347955-G	0.976005	1E-8		0.0445837	[0.028-0.061] unit increase	Affymetrix [16585745] (imputed)	N
1326	chr8	97138737	97138738	rs510062	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	8q22.1	NR	rs510062-G	0.4036	1E-8		0.022	[0.014-0.03] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1326	chr8	97182975	97182976	rs2514537	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	8q22.1		rs2514537-A	0.4	1E-10		6.45	z score increase	Affymetrix [9061022] (imputed)	N
1326	chr8	97184598	97184599	rs2319593	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	8q22.1	NR	rs2319593-T	0.3726	3E-8				NR [9056863] (imputed)	N
1326	chr8	97186966	97186967	rs2514540	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	8q22.1		rs2514540-C	0.47	4E-9		5.88	z score increase	Affymetrix [9061022] (imputed)	N
1326	chr8	97223161	97223162	rs35216833	34338756	Ahlberg G	2021-07-29	Eur Heart J	Genome-wide association study identifies 18 novel loci associated with left atrial volume and function.	Left atrial active emptying fraction	35,658 British ancestry individuals	NA	8q22.1		rs35216833-?	NR	8E-9		0.372	[0.24-0.5] unit decrease	Affymetrix [10600000] (imputed)	N
1327	chr8	97263417	97263418	rs7814319	24023788	Ong BA	2013-09-02	PLoS One	Gene network analysis in a pediatric cohort identifies novel lung function genes.	Lung function (FVC)	1,015 European ancestry individuals, 541 African American individuals	NA	8q22.1	NR	rs7814319-?		2E-6	(AA)			Illumina [up to 524000]	N
1327	chr8	97304688	97304689	rs80260687	28642124	Hensman Moss DJ	2017-06-20	Lancet Neurol	Identification of genetic variants associated with Huntington's disease progression: a genome-wide association study.	Huntington's disease progression	1,989 European and unknown ancestry mutation carriers	NA	8q22.1	MTERFD1, PTDSS1, UQCRB	rs80260687-?	NR	3E-6				Illumina [9650000] (imputed)	N
1327	chr8	97327678	97327679	rs16894459	26528553	Davenport ER	2015-11-03	PLoS One	Genome-Wide Association Studies of the Human Gut Microbiota.	Gut microbiome composition (summer)	91 Hutterite individuals	NA	8q22.1	NR	rs16894459-?	NR	7E-6	(genus_Desulfovibrio)	0.6961504	[0.35-1.05] unit decrease	Affymetrix [210924]	N
1327	chr8	97331025	97331026	rs3104154	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Peripheral arterial disease x type 2 diabetes interaction	5,882 European ancestry cases, 161,348 European ancestry controls	NA	8q22.1	PTDSS1	rs3104154-T	0.044	3E-8				Affymetrix [at least 723305] (imputed)	N
1327	chr8	97362324	97362325	rs7842166	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	8q22.1	NR	rs7842166-?	NR	1E-6				Affymetrix [NR]	N
1327	chr8	97369633	97369634	rs2640806	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	8q22.1	PTDSS1	rs2640806-A	0.317	5E-6	(Methionine )	0.03	[NR] umol/L increase	Illumina [899892]	N
1328	chr8	97416906	97416907	rs34467563	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	8q22.1	NR	rs34467563-?	NR	4E-6				Illumina [at least 7383741] (imputed)	N
1328	chr8	97444783	97444784	rs72680117	31311600	Namjou B	2019-07-17	BMC Med	GWAS and enrichment analyses of non-alcoholic fatty liver disease identify new trait-associated genes and pathways across eMERGE Network.	Liver fibrosis in non-alcoholic fatty liver disease	235 European ancestry individuals	NA	8q22.1	intergenic	rs72680117-A	0.493506	8E-6		0.423056	[0.24-0.6] unit decrease	NR [7263501] (imputed)	N
1328	chr8	97512976	97512977	rs2437772	26114229	Ashley-Koch AE	2015-06-12	J Affect Disord	Genome-wide association study of posttraumatic stress disorder in a cohort of Iraq-Afghanistan era veterans.	Post-traumatic stress disorder	949 non-Hispanic black individuals, 759 European ancestry individuals	NA	8q22.1	SDC2	rs2437772-?	NR	6E-6	EA	1.79	[NR]	Illumina [up to 5616481] (imputed)	N
1329	chr8	97519675	97519676	rs2437780	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	8q22.1		rs2437780-?	NR	4E-11				NR [~ 8900000] (imputed)	N
1329	chr8	97610839	97610840	rs2575725	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	8q22.1	SDC2	rs2575725-?		4E-9				Affymetrix, Illumina [NR] (imputed)	N
1329	chr8	97620969	97620970	rs2651454	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip	15 Asian ancestry cases, 13 European ancestry cases, 15 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	8q22.1	NR	rs2651454-?	NR	2E-6		0.93	[0.74-1.18]	Illumina [539000] (imputed)	N
1330	chr8	97658152	97658153	rs72680193	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CPQ	5,362 Icelandic ancestry individuals	NA	8q22.1		rs72680193-A	0.04234	6E-28		0.505849	[0.42-0.6] unit decrease	Illumina [7506463] (imputed)	N
1330	chr8	97672766	97672767	rs192039518	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8q22.1	NR	rs192039518-A	0.01045	1E-8	(PLPBP)	0.0618	NR unit decrease	Illumina [1671387] (imputed)	N
1330	chr8	97737740	97737741	rs149364428	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	8q22.1	NR	rs149364428-G	0.991	6E-13		0.2239	[0.16-0.28] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
1330	chr8	97737740	97737741	rs149364428	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	8q22.1	CPQ	rs149364428-A	0.0104	2E-12		1.27	[1.19-1.36]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1331	chr8	97796730	97796731	rs3763558	23725790	Renteria ME	2013-06-03	Twin Res Hum Genet	GWAS of DNA methylation variation within imprinting control regions suggests parent-of-origin association.	DNA methylation (variation)	256 European ancestry individuals	384 European ancestry individuals	8q22.1	PGCP	rs3763558-A	0.11	1E-6	(NESPAS-ICR)			Illumina [515966]	N
1331	chr8	97798135	97798136	rs56064043	28654678	Mandage R	2017-06-27	PLoS One	Genetic factors affecting EBV copy number in lymphoblastoid cell lines derived from the 1000 Genome Project samples.	Epstein-Barr virus copy number in lymphoblastoid cell lines	389 East Asian ancestry individuals, 189 South Asian ancestry individuals, 492 European ancestry individuals, 467 Sub-Saharan African ancestry individuals, 59 African American individuals, 157 Hispanic/Latino individuals	NA	8q22.1	CPQ	rs56064043-?	NR	7E-6	(Hispanic/Latino)			NR [at least 880000]	N
1331	chr8	97825207	97825208	rs10955084	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	8q22.1	CPQ	rs10955084-C	0.421306	3E-10		0.0131146	[0.009-0.0172] unit increase	NR [16516521] (imputed)	N
1331	chr8	97832517	97832518	rs145746079	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	8q22.1	CPQ	rs145746079-T	0.9715625	7E-58	(CPQ, 9394_19_3)	1.1916038	[1.05-1.33] unit increase	Illumina [> 1000000] (imputed)	N
1332	chr8	98024008	98024009	rs11984922	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CPQ	5,362 Icelandic ancestry individuals	NA	8q22.1		rs11984922-C	0.03996	1E-46		0.673979	[0.58-0.77] unit increase	Illumina [7506463] (imputed)	N
1332	chr8	98041636	98041637	rs148684432	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CPQ	5,362 Icelandic ancestry individuals	NA	8q22.1		rs148684432-A	0.02007	2E-118		1.48689	[1.36-1.61] unit decrease	Illumina [7506463] (imputed)	N
1333	chr8	98063001	98063002	rs143636724	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	8q22.1	NR	rs143636724-C	1.0	4E-6		1.01	[-1.048-3.068]	Affymetrix [at least 143006] (imputed)	N
1333	chr8	98063074	98063075	rs74890462	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	8q22.1	NR	rs74890462-G	0.0	4E-6		1.0204082	[-0.99839-3.03921]	Affymetrix [at least 143006] (imputed)	N
1333	chr8	98098503	98098504	rs117201495	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	8q22.1	CPQ	rs117201495-A	0.9875	9E-6		0.1721	[0.096-0.248] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1333	chr8	98143128	98143128	rs531453964	33536081	Hu J	2021-02-03	Hum Genomics	Genetic variants are identified to increase risk of COVID-19 related mortality from UK Biobank data.	Mortality in COVID-19	292 European ancestry cases, 804 European ancestry controls	NA	8q22.1	NR	rs531453964-?	NR	3E-6		1.849	NR	NR [18617478] (imputed)	N
1333	chr8	98154440	98154441	rs17737465	23728906	Byrne EM	2013-05-31	Am J Med Genet B Neuropsychiatr Genet	A genome-wide association study of sleep habits and insomnia.	Sleep duration	2,278 European ancestry individuals	NA	8q22.1	PGCP	rs17737465-G	0.37	2E-6		0.14	[0.081-0.199] unit decrease	Illumina [2380486] (imputed)	N
1333	chr8	98166912	98166913	rs1835740	20802479	Anttila V	2010-08-29	Nat Genet	Genome-wide association study of migraine implicates a common susceptibility variant on 8q22.1.	Migraine	2,731 European ancestry cases, 10,747 European ancestry controls	3,202 European ancestry cases, 40,062 European ancestry controls	8q22.1	MTDH, PGCP	rs1835740-A	0.21	2E-11		1.18	[1.13-1.24]	Illumina [429912]	N
1334	chr8	98282188	98282189	rs1864729	23518928	Liu M	2013-03-21	Mol Endocrinol	TSPYL5 SNPs: association with plasma estradiol concentrations and aromatase expression.	Estradiol plasma levels (breast cancer)	700 European ancestry cases, 50 African ancestry cases, 17 Asian ancestry cases, 5 American Indian ancestry cases	NA	8q22.1	TSPYL5	rs1864729-?	0.098	3E-8		1.589	[1.35-1.871] unit increase	Illumina [563945]	N
1335	chr8	98318855	98318856	rs73696224	30070759	Olsson M	2018-08-02	J Thromb Haemost	Genome-wide analysis of genetic determinants of circulating factor VII activating protease (FSAP) activity.	Plasma factor VII activating protease levels	3,126 Swedish ancestry individuals	NA	8q22.1	Intergenic	rs73696224-?		1E-6		40.2	[23.93-56.47] unit decrease	Illumina [~ 10000000] (imputed)	N
1335	chr8	98320929	98320930	rs117780640	30818990	Yu D	2019-03-01	Am J Psychiatry	Interrogating the Genetic Determinants of Tourette's Syndrome and Other Tic Disorders Through Genome-Wide Association Studies.	Tourette syndrome	4,271 European ancestry cases, 548 European ancestry cases from 207 families, 9,488 European ancestry controls	706 Icelandic ancestry cases, 6,068 Icelandic ancestry controls	8q22.1	TSPYL5	rs117780640-C	0.8639	3E-6		1.2153109		Illumina [8265319] (imputed)	N
1335	chr8	98329764	98329765	rs6468544	20921969	Aberg K	2010-10-05	Pharmacogenomics J	Genome-wide association study of antipsychotic-induced QTc interval prolongation.	Antipsychotic drug-induced QTc interval prolongation	738 European, African American, Hispanic, and other ancestry Schizophrenia cases	NA	8q22.1	intergenic	rs6468544-?	NR	8E-7	(Risperidone)			Affymetrix [492000]	N
1335	chr8	98367000	98367001	rs7833199	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Basal cell carcinoma	31,787 European ancestry cases, 619,351 European ancestry controls	NA	8q22.1	U3	rs7833199-C	0.690068	2E-9		1.0526316	[1.04-1.08]	Affymetrix, Illumina [up to 9061544] (imputed)	N
1335	chr8	98367883	98367884	rs4735451	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Keratinocyte cancer (MTAG)	at least 18,538 European ancestry cases, at least 340,302 European ancestry controls	NA	8q22.1	U3	rs4735451-T	0.729065	5E-9		1.06	[1.04-1.08]	Affymetrix [7600000] (imputed)	N
1335	chr8	98392123	98392124	rs2853291	31430377	Chung J	2019-08-20	Brain	Genome-wide association study of cerebral small vessel disease reveals established and novel loci.	Non-lobar intracerebral hemorrhage (MTAG)	at least 1,005 European ancestry cases, at least 1,711 European ancestry controls	NA	8q22.1	Intergenic	rs2853291-?	NR	9E-7		1.14	[1.07-1.21]	Affymetrix, Illumina [39235000] (imputed)	N
1336	chr8	98472200	98472201	rs499177	30134803	Matana A	2018-04-11	Mol Med	Genome-wide meta-analysis identifies novel loci associated with parathyroid hormone level.	Plasma parathyroid hormone levels	806 Korculan (founder/genetic isolate) individuals, 831 Vis (founder/genetic isolate) individuals, 959 Croatian ancestry individuals	NA	8q22.1	MTDH	rs499177-T	0.45	5E-6		0.13	[0.071-0.189] unit increase	Illumina [7411206] (imputed)	N
1337	chr8	98594153	98594154	rs2045966	27488534	Patel YM	2016-08-03	Cancer Res	Novel Association of Genetic Markers Affecting CYP2A6 Activity and Lung Cancer Risk.	Nicotine metabolite ratio in current smokers	437 European ancestry individuals, 364 African American individuals, 453 Latino individuals, 674 Japanese American individuals, 311 Native Hawaiian ancestry individuals	NA	8q22.1	TSPYL5, MTDH	rs2045966-G	NR	3E-8		0.2483	[0.16-0.34] unit increase	Illumina [11892802] (imputed)	N
1337	chr8	98597740	98597741	rs1478953	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8q22.1	LAPTM4B	rs1478953-?	NR	7E-6	(PC 36:5)	0.19017538	[0.11-0.27] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1337	chr8	98598327	98598328	rs1817411	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Granulocyte-colony stimulating factor levels	7,904 Finnish ancestry individuals	NA	8q22.1	NR	rs1817411-C		3E-6		0.089	[0.052-0.126] SD units decrease	NR [10700000] (imputed)	N
1337	chr8	98600976	98600977	rs2448140	32572145	Kawafune K	2020-06-22	J Hum Genet	Strong association between the 12q24 locus and sweet taste preference in the Japanese population revealed by genome-wide meta-analysis.	Sweet taste preference	12,312 Japanese ancestry individuals	NA	8q22.1	LOC105375657, MTDH	rs2448140-T	0.445	3E-6		0.056	[0.032-0.08] unit increase	Illumina [5299861] (imputed)	N
1337	chr8	98640061	98640062	rs1031868	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	8q22.1	NR	rs1031868-G	0.077434	4E-16		0.027653	[0.021-0.034] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
1337	chr8	98640061	98640062	rs1031868	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin concentration	172,851 European ancestry individuals	NA	8q22.1	KB-1683C8.1	rs1031868-G	0.0766	4E-9		0.03837732	[0.026-0.051] unit increase	Affymetrix [~ 2500000] (imputed)	N
1337	chr8	98640061	98640062	rs1031868	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	8q22.1	KB-1683C8.1	rs1031868-G	0.0766	5E-12		0.04613364	[0.033-0.059] unit increase	Affymetrix [~ 2500000] (imputed)	N
1337	chr8	98652147	98652148	rs1155998	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	8q22.1	MTDH	rs1155998-A	0.0694	2E-16		0.0576176	[0.044-0.071] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1337	chr8	98664652	98664653	rs2468024	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	8q22.1	MTDH	rs2468024-A	0.06729	6E-17		0.0326145	[0.025-0.041] unit increase	Affymetrix [93095623] (imputed)	N
1337	chr8	98664652	98664653	rs2468024	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	8q22.1	MTDH	rs2468024-A	0.0673	1E-24		0.0447262	[0.036-0.053] unit increase	Affymetrix [93095623] (imputed)	N
1337	chr8	98664652	98664653	rs2468024	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	8q22.1	MTDH	rs2468024-A	0.067308	5E-31		0.051040795	[0.042-0.06] unit increase	Affymetrix [93095623] (imputed)	N
1337	chr8	98664652	98664653	rs2468024	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	8q22.1	NR	rs2468024-A	0.067778	4E-32		0.045198	[0.038-0.053] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
1337	chr8	98664652	98664653	rs2468024	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	8q22.1		rs2468024-?	NR	4E-29				NR [~ 8900000] (imputed)	N
1337	chr8	98664652	98664653	rs2468024	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	8q22.1	MTDH	rs2468024-A	NR	7E-22		0.0721306	[0.057-0.088] unit decrease	Affymetrix [16832071] (imputed)	N
1337	chr8	98681770	98681771	rs2513369	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	8q22.1	MTDH	rs2513369-G	0.0675	6E-60		0.07208498	[0.063-0.081] unit decrease	Affymetrix [93095623] (imputed)	N
1337	chr8	98681770	98681771	rs2513369	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q22.1	NR	rs2513369-C	0.924759	2E-72				Affymetrix, Illumina [22063850] (imputed)	N
1337	chr8	98681770	98681771	rs2513369	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	8q22.1	NR	rs2513369-C	0.931792	2E-72		0.067208	[0.06-0.075] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
1337	chr8	98681770	98681771	rs2513369	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q22.1	NR	rs2513369-G	0.108081	2E-35				Affymetrix, Illumina [20825802] (imputed)	N
1338	chr8	98699190	98699191	rs34735761	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	8q22.1		rs34735761-A	NR	3E-18		0.0265	[0.021-0.032] unit increase	Affymetrix, Illumina [20536605] (imputed)	N
1338	chr8	98706422	98706423	rs2438197	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q22.1	NR	rs2438197-C	0.106214	3E-30				Affymetrix, Illumina [21126107] (imputed)	N
1338	chr8	98708414	98708415	rs2438206	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	8q22.1		rs2438206-C	NR	3E-13		0.0221	[0.016-0.028] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
1338	chr8	98708414	98708415	rs2438206	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	8q22.1		rs2438206-C	NR	2E-27		0.0331	[0.027-0.039] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
1338	chr8	98708414	98708415	rs2438206	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q22.1	NR	rs2438206-C	0.118868	3E-15				Affymetrix, Illumina [24246363] (imputed)	N
1338	chr8	98720756	98720757	rs149211171	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin	108,054 Japanese ancestry individuals	NA	8q22.1	MTDH	rs149211171-?	NR	4E-8		0.02684	[0.017-0.036] unit increase novel	Illumina [6108953] (imputed)	N
1338	chr8	98721564	98721567	rs60689075	34130359	Curtis SW	2021-06-15	Genet Epidemiol	FAT4 identified as a potential modifier of orofacial cleft laterality.	Right unilateral cleft lip and palate	59 Asian ancestry cases, 94 European ancestry cases, 263 Hispanic cases, 1,626 controls	NA	8q22.1	NR	rs60689075-?		9E-6		1.48	[1.24-1.77]	Illumina [539473] (imputed)	N
1338	chr8	98735941	98735942	rs2449511	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	8q22.1		rs2449511-?	NR	3E-65				NR [~ 8900000] (imputed)	N
1338	chr8	98738360	98738361	rs1311	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	8q22.1		rs1311-C	0.253783	2E-9		0.0250232	[0.017-0.033] unit increase	Illumina [13476299] (imputed)	N
1338	chr8	98743591	98743592	rs2438213	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	135,482 East Asian ancestry individuals	NA	8q22.1		rs2438213-A	0.253774	4E-10		0.0259225	[0.018-0.034] unit increase	Illumina [13477028] (imputed)	N
1338	chr8	98753476	98753477	rs9773514	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8q22.1	LAPTM4B	rs9773514-?	NR	9E-6	(PC 38:3)	0.21151228	[0.12-0.3] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1338	chr8	98808871	98808872	rs11777388	34274964	Duijvenboden S	2021-07-19	Hum Mol Genet	Genomic and pleiotropic analyses of resting QT interval identifies novel loci and overlap with atrial electrical disorders.	QT interval	27,612 European ancestry women	NA	8q22.1		rs11777388-A	0.59	1E-7		0.032	[0.02-0.044] unit increase	Affymetrix [NR]	N
1338	chr8	98812247	98812248	rs7839633	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	8q22.1		rs7839633-G	NR	3E-8		0.0123	[0.008-0.0166] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
1339	chr8	98835225	98835226	rs6983263	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	8q22.1	NR	rs6983263-C	0.4744	6E-9		0.001321	[0.00087-0.00177] unit decrease	Affymetrix [NR] (imputed)	N
1339	chr8	98850329	98850330	rs11779860	24952745	Arking DE	2014-06-22	Nat Genet	Genetic association study of QT interval highlights role for calcium signaling pathways in myocardial repolarization.	QT interval	Up to 70,389 European ancestry individuals, up to 672 Orcadian individuals	Up to 33,316 European ancestry individuals	8q22.1	LAPTM4B	rs11779860-C	0.47	2E-10		0.61	[0.41-0.81] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1339	chr8	98897460	98897461	rs7816792	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	8q22.1	NR	rs7816792-?		3E-8	(APOA4)	0.4723	[NR] unit increase	Illumina [NR]	N
1339	chr8	98900368	98900369	rs35804177	30694715	Sakornsakolpat P	2019-01-29	Am J Respir Cell Mol Biol	Genome-Wide Association Analysis of Single Breath Diffusing Capacity of Carbon Monoxide (DLCO).	Diffusing capacity of carbon monoxide	2,584 European ancestry individuals with chronic obstructive pulmonary disease, 3,002 European ancestry healthy individuals, 343 African American individuals with chronic obstructive pulmonary disease, 1,006 African American healthy individuals	NA	8q22.1	MATN2	rs35804177-C	0.02	6E-7	(African American)	0.69	0.42-0.96 unit increase	Illumina [NR] (imputed)	N
1339	chr8	98904159	98904160	rs113340062	30583798	Bovijn J	2018-12-21	Am J Hum Genet	GWAS Identifies Risk Locus for Erectile Dysfunction and Implicates Hypothalamic Neurobiology and Diabetes in Etiology.	Erectile dysfunction	6,175 European ancestry male cases, 217,630 European ancestry male controls	NA	8q22.1	MATN2	rs113340062-?	NR	6E-7				Affymetrix, Illumina [at least 807411] (imputed)	N
1339	chr8	98904914	98904915	rs4489302	30648747	Dudenkov TM	2019-01-16	Clin Pharmacol Ther	Anastrozole Aromatase Inhibitor Plasma Drug Concentration Genome-Wide Association Study: Functional Epistatic Interaction between SLC38A7 and ALPPL2.	Plasma anastrozole concentration in anastrozole-treated estrogen receptor positive breast cancer	634 European ancestry individuals, 40 African ancestry individuals, 13 Asian ancestry individuals	NA	8q22.1	NR	rs4489302-C	0.0143	3E-6		1.3599	[0.8-1.92] unit decrease	Illumina [~ 600000] (imputed)	N
1339	chr8	98913843	98913844	rs77983918	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Smoking x traumatic event in childhood (sexually molested) interaction	127,766 European ancestry individuals	NA	8q22.2		rs77983918-?	NR	5E-8		1.0065	[0.64-1.37] unit increase	Affymetrix [NR] (imputed)	N
1339	chr8	98937622	98937623	rs28524918	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	8q22.2		rs28524918-G	NR	7E-9		0.0101	[0.0068-0.0134] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1339	chr8	98954011	98954012	rs2513845	34506852	Chang X	2021-09-07	J Allergy Clin Immunol	A genome-wide association meta-analysis identifies new Eosinophilic esophagitis loci.	Eosinophilic esophagitis	1,930 European ancestry cases, 13,634 European ancestry controls	NA	8q22.2	MATN2	rs2513845-T	0.0025	7E-9		4.18	[2.58-6.79]	Illumina [11310926] (imputed)	N
1340	chr8	98968098	98968099	rs9693435	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8q22.2	RPL30	rs9693435-?	NR	5E-6	(TAG 58:12)	0.16898035	[0.096-0.242] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1340	chr8	98974112	98974113	rs3816496	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8q22.2	RPL30	rs3816496-?	NR	5E-6	(LPE 18:0)	0.15411282	[0.088-0.22] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1340	chr8	99022008	99022009	rs2444896	23648065	Low SK	2013-05-04	Cancer Sci	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (paclitaxel)	218 Japanese ancestry cases, 364 Japanese controls	NA	8q22.2	MATN2	rs2444896-T	0.603	2E-6	(Dominant model)	1.754	[1.355-2.269]	Illumina [733202]	N
1340	chr8	99088580	99088581	rs13278732	20208534	Rothenberg ME	2010-03-07	Nat Genet	Common variants at 5q22 associate with pediatric eosinophilic esophagitis.	Eosinophilic esophagitis (pediatric)	181 European ancestry cases, 1,974 European ancestry controls	170 European ancestry cases, 1,130 European ancestry controls	8q22.2	NR	rs13278732-T	0.27	6E-6		1.31	[1.04-1.65]	Illumina [~ 550000]	N
1340	chr8	99089483	99089484	rs2513831	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Cerebellum cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	8q22.2	C8orf47	rs2513831-?		3E-6				Illumina [4322238] (imputed)	N
1341	chr8	99100931	99100932	rs2444861	30584014	Huang M	2018-12-12	Neuroimage Clin	Spatial correlations exploitation based on nonlocal voxel-wise GWAS for biomarker detection of AD.	Voxel-wise structural brain imaging measurements in Alzheimer's disease	708 European ancestry individuals	NA	8q22.2	ERICH5	rs2444861-?	NR	1E-6	(BM4D-weighted model)			Illumina [501584]	N
1341	chr8	99113686	99113687	rs10107366	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	8q22.2	HRSP12	rs10107366-G	0.0080	6E-7	(Energy balance )	0.04	[NR] kcal/d increase	Illumina [899892]	N
1341	chr8	99115358	99115359	rs1462977	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	8q22.2	HRSP12	rs1462977-G	0.323	2E-39	(Ribonuclease UK114, HRSP12.14636.25.3)	0.34	[0.28-0.4] unit decrease	Affymetrix [10572788] (imputed)	N
1341	chr8	99118621	99118622	rs2242197	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RIDA	5,366 Icelandic ancestry individuals	NA	8q22.2		rs2242197-C	0.3545	8E-14		0.147183	[0.11-0.19] unit decrease	Illumina [7506463] (imputed)	N
1341	chr8	99127983	99127984	rs57392722	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	8q22.2	HRSP12	rs57392722-C	0.65375	6E-10	(HRSP12, 14636_25_3)	0.15957436	[0.11-0.21] unit increase	Illumina [> 1000000] (imputed)	N
1341	chr8	99129506	99129507	rs2071598	22210626	Mead S	2011-12-30	Hum Mol Genet	Genome-wide association study in multiple human prion diseases suggests genetic risk factors additional to PRNP.	Prion diseases	1,281 European ancestry cases, 6,015 European ancestry controls, 290 Papua New Guinean ancestry cases, 286 Papua New Guinean ancestry controls	NA	8q22.2	NR	rs2071598-?	NR	9E-6		1.2646	[NR]	Illumina [NR] (imputed)	N
1341	chr8	99129557	99129558	rs80085618	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8q22.2	NR	rs80085618-A	0.01394	9E-9	(DCN)	0.05493	NR unit increase	Illumina [1671387] (imputed)	N
1341	chr8	99140661	99140662	rs3824145	33002292	Shinohara T	2020-10-01	J Cell Mol Med	Inherited genetic variants associated with glucocorticoid sensitivity in leukaemia cells.	Glucocorticoid receptor gene expression in B-cell precursor acute lymphoblastic leukaemia	72 Japanese ancestry leukaemic cell lines	NA	8q22.2	POP1	rs3824145-?	NR	3E-6				Illumina [331281]	N
1341	chr8	99193234	99193235	rs62522238	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in hypertension	398 Korean ancestry cases, 15,909 Korean ancestry controls	NA	8q22.2		rs62522238-C	0.2086	2E-6		1.467	[1.253-1.719]	Affymetrix [7975321] (imputed)	N
1341	chr8	99193764	99193765	rs4734387	31212010	Cabana-Dominguez J	2019-06-15	Prog Neuropsychopharmacol Biol Psychiatry	Genome-wide association meta-analysis of cocaine dependence: Shared genetics with comorbid conditions.	Cocaine dependence	2,085 European ancestry cases, 4,293 European ancestry controls	NA	8q22.2	NIPAL2	rs4734387-A	NR	4E-6		0.2126	[0.12-0.3] unit decrease	Illumina [9290362] (imputed)	N
1341	chr8	99203507	99203508	rs2053934	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	8q22.2		rs2053934-T	NR	5E-8		0.0131	[0.0084-0.0178] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1342	chr8	99236898	99236899	rs2514323	31095298	Huang M	2019-05-16	Bioinformatics	Incorporating spatial-anatomical similarity into the VGWAS framework for AD biomarker detection.	Voxel-wise structural brain imaging measurements in Alzheimer's disease	708 European ancestry individuals	NA	8q22.2	NIPAL2	rs2514323-?	NR	8E-6				Illumina [501584]	N
1342	chr8	99244975	99244975	rs139016242	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 63)	3,566 European ancestry individuals	4,680 European ancestry individuals	8q22.2		rs139016242-TA	0.268873239	3E-10				Illumina [7417619] (imputed)	N
1342	chr8	99312260	99312261	rs118079955	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Urolithiasis	6,223 European ancestry cases, 482,123 European ancestry controls, 11,699 East Asian ancestry cases, 167,027 East Asian ancestry controls	NA	8q22.2		rs118079955-C	NR	5E-8		0.3872	[0.25-0.53] unit increase	Affymetrix, Illumina [25845211] (imputed)	N
1342	chr8	99312260	99312261	rs118079955	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Urolithiasis	11,699 East Asian ancestry cases, 167,027 East Asian ancestry controls	NA	8q22.2		rs118079955-C	0.012766751	5E-8		0.3872187	[0.25-0.53] unit increase	Illumina [13429980] (imputed)	N
1342	chr8	99317738	99317739	rs11785622	23400010	Del-Aguila JL	2013-02-12	Pharmacogenomics J	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NA	8q22.2	NIPAL2	rs11785622-T	0.07	4E-6	(AA-glucose response)	7.21	[4.15-10.27] mg/dL decrease	Affymetrix, Illumina [> 2000000] (imputed)	N
1342	chr8	99330909	99330910	rs7829174	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	8q22.2	intergenic	rs7829174-A	0.4637	2E-9		0.0114	[0.0077-0.0151] unit increase	Affymetrix [18391927] (imputed)	N
1343	chr8	99372328	99372329	rs13281988	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	8q22.2	NIPAL2, KCNS2	rs13281988-C	0.31	1E-8		1.06	[1.05-1.07]	Illumina [at least 560000] (imputed)	N
1343	chr8	99372328	99372329	rs13281988	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	8q22.2	NIPAL2, KCNS2	rs13281988-?	NR	1E-8		1.0559661	[1.04-1.08]	Illumina [13754664] (imputed)	N
1343	chr8	99455310	99455311	rs11774066	28232668	Yu Y	2017-02-24	Nat Commun	Genome-wide analyses of non-syndromic cleft lip with palate identify 14 novel loci and genetic heterogeneity.	Nonsyndromic cleft lip with cleft palate	2,033 Han Chinese ancestry cases, 4,051 Han Chinese ancestry controls	1,346 Han Chinese ancestry cases, 4,542 Han Chinese ancestry controls	8q22.2	NR	rs11774066-A	0.38	3E-7		1.16		Illumina [803202]	N
1343	chr8	99472288	99472289	rs151126591	30468137	Fabbri C	2018-11-23	Br J Psychiatry	Genome-wide association study of treatment-resistance in depression and meta-analysis of three independent samples.	Depressive symptom improvement	1,378 European ancestry treatment resistant cases, 934 European ancestry responders to first treatment	NA	8q22.2	STK3	rs151126591-T	0.01	5E-6		0.35	[0.19-0.51] unit increase	Affymetrix, Illumina [7000000] (imputed)	N
1344	chr8	99491116	99491117	rs141435206	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Coronary artery disease in dyslipidemia	768 Korean ancestry cases, 19,999 Korean ancestry controls	NA	8q22.2		rs141435206-G	0.01243	4E-7		2.396	[1.70699999999999-3.364]	Affymetrix [7975321] (imputed)	N
1344	chr8	99580115	99580116	rs186208701	28498854	Liang J	2017-05-12	PLoS Genet	Single-trait and multi-trait genome-wide association analyses identify novel loci for blood pressure in African-ancestry populations.	Blood pressure traits (multi-trait analysis)	Up to 31,155 African individuals	Up to 4,187 African individuals, up to 14,016 Korean ancestry individuals, up to 23,914 European ancestry individuals, up to 12,278 Hispanic individuals	8q22.2	NR	rs186208701-?	NR	8E-7	(Het)			Affymetrix, Illumina [at least 30072738] (imputed)	N
1345	chr8	99712643	99712644	rs185266751	33898419	Mukhopadhyay N	2021-04-09	Front Cell Dev Biol	Genome-Wide Association Study of Non-syndromic Orofacial Clefts in a Multiethnic Sample of Families and Controls Identifies Novel Regions.	Nonsyndromic cleft lip with or without cleft palate	154 African ancestry cases, 274 African ancestry controls, 445 Asian ancestry cases, 1,246 Asian ancestry controls, 569 European ancestry cases, 2,704 European ancestry controls, 1,050 Central and South American cases, 2,988 Central and South American controls, 3 cases, 14 controls	NA	8q22.2	NR	rs185266751-G		2E-7		0.5	[0.32-0.68] unit increase	Illumina [NR] (imputed)	N
1345	chr8	99729415	99729416	rs138330605	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	8q22.2	STK3	rs138330605-G	NR	8E-6		0.644995	[0.36-0.93] unit decrease	Illumina [at least 950000] (imputed)	N
1345	chr8	99741277	99741278	rs187821766	28498854	Liang J	2017-05-12	PLoS Genet	Single-trait and multi-trait genome-wide association analyses identify novel loci for blood pressure in African-ancestry populations.	Blood pressure traits (multi-trait analysis)	Up to 31,155 African individuals	Up to 4,187 African individuals, up to 14,016 Korean ancestry individuals, up to 23,914 European ancestry individuals, up to 12,278 Hispanic individuals	8q22.2	NR	rs187821766-?	NR	9E-8	(Het)			Affymetrix, Illumina [at least 30072738] (imputed)	N
1346	chr8	99797277	99797278	rs1013781674	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Coronary artery disease in dyslipidemia	768 Korean ancestry cases, 19,999 Korean ancestry controls	NA	8q22.2		rs1013781674-C	0.01073	2E-6		2.395	[1.676-3.42199999999999]	Affymetrix [7975321] (imputed)	N
1346	chr8	99819795	99819796	rs112745054	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	8q22.2	STK3	rs112745054-T	0.95347	8E-10		0.0270117	[0.018-0.036] unit increase	NR [13737936] (imputed)	N
1346	chr8	99855165	99855166	rs77287772	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Ensifer abundance in stool	5,959 Finnish ancestry individuals	NA	8q22.2		rs77287772-A	0.0609777	4E-8		0.0917321	[0.059-0.124] unit increase	Illumina [7980478] (imputed)	N
1347	chr8	99895404	99895405	rs3019286	26079190	Galfalvy H	2015-06-16	Am J Med Genet B Neuropsychiatr Genet	A genome-wide association study of suicidal behavior.	Suicide behavior	577 European ancestry cases, 1,233 European ancestry controls	NA	8q22.2	STK3	rs3019286-A	0.36	8E-6		1.402	[1.208-1.626]	Illumina [794207]	N
1348	chr8	100078925	100078926	rs11988731	33593615	Huang Y	2020-11-09	J Genet Genomics	A genome-wide association study of facial morphology identifies novel genetic loci in Han Chinese.	Nose morphology	2,659 Han Chinese ancestry individuals	NA	8q22.2	VPS13B	rs11988731-?		6E-11				Illumina [4757938] (imputed)	N
1349	chr8	100146900	100146901	rs143024324	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	8q22.2	NR	rs143024324-?	NR	2E-9	(NEMO)	1.80134	[1.21-2.39] unit increase	Illumina [11901634] (imputed)	N
1349	chr8	100194294	100194295	rs35018432	29855537	Hirata T	2018-05-31	Sci Rep	Japanese GWAS identifies variants for bust-size, dysmenorrhea, and menstrual fever that are eQTLs for relevant protein-coding or long non-coding RNAs.	Menstruation quality of life impact (dysmenorrhea)	3,573 Japanese ancestry female cases, 2,161 Japanese ancestry female controls	3,580 Japanese ancestry female cases, 2,034 Japanese ancestry female controls	8q22.2	NR	rs35018432-T	0.375217674	6E-6		0.13321592	[0.076-0.191] unit increase	Affymetrix [536506]	N
1349	chr8	100208765	100208766	rs79837320	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	8q22.2	NR	rs79837320-?	NR	8E-6		0.0989	[0.055-0.143] unit increase	Illumina [at least 560000] (imputed)	N
1349	chr8	100212580	100212581	rs4734427	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	8q22.2		rs4734427-?	NR	4E-11				NR [~ 8900000] (imputed)	N
1351	chr8	100495638	100495639	rs3105169	24665060	Argos M	2014-03-24	J Med Genet	Genome-wide association study of smoking behaviours among Bangladeshi adults.	Smoking initiation	754 Bangladeshi ancestry never smoker males, 2,565 Bangladeshi ancestry never smoker females, 1,837 Bangladeshi ancestry ever smoker males, 198 Bangladeshi ancestry ever smoker females	NA	8q22.2	NR	rs3105169-?	NR	8E-6	(females)			Illumina [1211988] (imputed)	N
1351	chr8	100501687	100501688	rs71516839	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Intake of total sugars	174,424 European ancestry individuals	NA	8q22.2	VPS13B	rs71516839-A	0.01	3E-6		3.69	[2.16-5.22] g/day increase	Affymetrix [10353649] (imputed)	N
1351	chr8	100509356	100509357	rs60373317	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 1)	4,680 European ancestry individuals	3,566 European ancestry individuals	8q22.2		rs60373317-A	0.202185201	2E-9				Illumina [7417619] (imputed)	N
1351	chr8	100511897	100511898	rs3105176	29921221	Cha S	2018-06-19	BMC Genomics	Identification of five novel genetic loci related to facial morphology by genome-wide association studies.	Nose morphology	5,643 Korean ancestry individuals	up to 1,940 Korean ancestry individuals	8q22.2	VPS13B	rs3105176-C	0.42	1E-8	(Nasolabial angle)	0.013	[NR] unit increase	Affymetrix [311944]	N
1351	chr8	100529825	100529826	rs1487022	28232668	Yu Y	2017-02-24	Nat Commun	Genome-wide analyses of non-syndromic cleft lip with palate identify 14 novel loci and genetic heterogeneity.	Nonsyndromic cleft lip with cleft palate	2,033 Han Chinese ancestry cases, 4,051 Han Chinese ancestry controls	1,346 Han Chinese ancestry cases, 4,542 Han Chinese ancestry controls	8q22.2	NR	rs1487022-A	0.39	8E-8		1.17		Illumina [803202]	N
1352	chr8	100557481	100557482	rs76734776	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cholelithiasis	9,305 East Asian ancestry cases, 168,253 East Asian ancestry controls	NA	8q22.2		rs76734776-C	0.020301092	1E-8		0.3513017	[0.23-0.47] unit increase	Illumina [13429768] (imputed)	N
1352	chr8	100557481	100557482	rs76734776	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cholelithiasis	26,122 European ancestry cases, 461,431 European ancestry controls, 9,305 East Asian ancestry cases, 168,253 East Asian ancestry controls	NA	8q22.2		rs76734776-C	NR	1E-8		0.3513	[0.23-0.47] unit increase	Affymetrix, Illumina [25844936] (imputed)	N
1352	chr8	100576973	100576974	rs557293205	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Urolithiasis	6,223 European ancestry cases, 482,123 European ancestry controls, 11,699 East Asian ancestry cases, 167,027 East Asian ancestry controls	NA	8q22.2		rs557293205-A	NR	7E-9		0.5403	[0.36-0.72] unit increase	Affymetrix, Illumina [25845211] (imputed)	N
1352	chr8	100576973	100576974	rs557293205	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Urolithiasis	11,699 East Asian ancestry cases, 167,027 East Asian ancestry controls	NA	8q22.2		rs557293205-A	0.008516223	7E-9		0.5402892	[0.36-0.72] unit increase	Illumina [13429980] (imputed)	N
1352	chr8	100595558	100595559	rs77547719	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q22.2	NR	rs77547719-A	0.0451168	1E-13				Affymetrix, Illumina [24246363] (imputed)	N
1352	chr8	100607438	100607439	rs546385757	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	8q22.2	NR	rs546385757-?	NR	9E-7		1.22733	[0.74-1.72] unit increase	NR [13958389] (imputed)	N
1352	chr8	100626501	100626502	rs75976055	33547071	Bonfante B	2021-02-05	Sci Adv	A GWAS in Latin Americans identifies novel face shape loci, implicating VPS13B and a Denisovan introgressed region in facial variation.	Facial morphology (columella size)	6,169 Latin American individuals	NA	8q22.2		rs75976055-?	NR	4E-11				Illumina [8703729] (imputed)	N
1352	chr8	100638094	100638095	rs76228276	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	8q22.2	NR	rs76228276-?	NR	8E-6		0.0922	[0.051-0.133] unit increase	Illumina [at least 560000] (imputed)	N
1353	chr8	100696694	100696695	rs1788161	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	8q22.2		rs1788161-?	NR	6E-11				NR [~ 8900000] (imputed)	N
1353	chr8	100697028	100697029	rs79121242	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	8q22.2	VPS13B	rs79121242-C	0.057706	1E-10		0.030770432	[0.021-0.04] unit increase	Affymetrix [93095623] (imputed)	N
1353	chr8	100697028	100697029	rs79121242	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	8q22.2	VPS13B	rs79121242-C	0.057742	3E-11		0.03180881	[0.022-0.041] unit decrease	Affymetrix [93095623] (imputed)	N
1353	chr8	100697028	100697029	rs79121242	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	8q22.2	VPS13B	rs79121242-C	0.057687	1E-11		0.0287971	[0.02-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
1353	chr8	100697028	100697029	rs79121242	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	8q22.2	VPS13B	rs79121242-C	0.057696	6E-9		0.027744941	[0.018-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
1353	chr8	100697028	100697029	rs79121242	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q22.2	NR	rs79121242-C	0.0521911	2E-11				Affymetrix, Illumina [24332387] (imputed)	N
1353	chr8	100697028	100697029	rs79121242	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	8q22.2	NR	rs79121242-C	0.057553	3E-13		0.029332	[0.021-0.037] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
1353	chr8	100697028	100697029	rs79121242	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	8q22.2		rs79121242-?	NR	4E-11		0.0290178	[0.02-0.038] unit increase	Affymetrix [20259828] (imputed)	N
1353	chr8	100749228	100749229	rs113306726	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	8q22.2		rs113306726-?	NR	7E-9				NR [~ 8900000] (imputed)	N
1353	chr8	100789814	100789815	rs1667633	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	8q22.2		rs1667633-?	NR	8E-10		0.0305554	[0.021-0.04] unit increase	Affymetrix [20259828] (imputed)	N
1354	chr8	100823645	100823646	rs76397965	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q22.2	NR	rs76397965-C	0.0422879	6E-11				Affymetrix, Illumina [20825802] (imputed)	N
1354	chr8	100824549	100824550	rs921313	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	8q22.2	NR	rs921313-A	0.044936	3E-15		0.034764	[0.026-0.043] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1354	chr8	100824549	100824550	rs921313	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	8q22.2	NR	rs921313-A	0.045331	7E-13		0.033416	[0.024-0.043] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
1354	chr8	100824549	100824550	rs921313	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	8q22.2		rs921313-?	NR	3E-12				NR [~ 8900000] (imputed)	N
1354	chr8	100835181	100835182	rs959695	22745009	Melville SA	2012-05-15	Ann Neurol	Multiple loci influencing hippocampal degeneration identified by genome scan.	Hippocampal atrophy	1149 European ancestry Alzheimer disease cases, 336 European ancestry individuals with mild cognitive impairment, 188 European ancestry controls	419 African American Alzheimer disease cases	8q22.2	intergenic	rs959695-C	0.18	1E-6	(Hippocampal volume)			Illumina [2131250] (imputed)	N
1354	chr8	100846839	100846840	rs12545602	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	8q22.2	VPS13B	rs12545602-C	0.872874	8E-12		0.019038	[0.014-0.024] unit decrease	NR [13737936] (imputed)	N
1354	chr8	100846839	100846840	rs12545602	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	8q22.2		rs12545602-?	NR	8E-14				NR [~ 8900000] (imputed)	N
1354	chr8	100863913	100863914	rs75251638	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid pneumonia vs population)	1,004 European ancestry cases, 680,354 European ancestry controls, 218 Hispanic or Latin American cases, 94,318 Hispanic or Latin American controls, 64 Black or African American cases, 22,412 Black or African American controls	NA	8q22.2		rs75251638-?	NR	7E-6		0.5608204	[0.32-0.8] unit increase	Illumina [9901720] (imputed)	N
1354	chr8	100865681	100865682	rs61753726	28084903	Hallberg P	2017-01-13	Pharmacogenomics	Genetic variants associated with angiotensin-converting enzyme inhibitor-induced cough: a genome-wide association study in a Swedish population.	Cough in response to angiotensin-converting enzyme inhibitor drugs	123 European ancestry cases, 1,345 European and unknown ancestry controls, 1 Middle Eastern ancestry case	NR	8q22.2	VPS13B	rs61753726-?	NR	2E-6		5.16	[2.62-10.19]	Illumina [8600000] (imputed)	N
1354	chr8	100897382	100897383	rs13253073	25524916	Palmer ND	2014-12-18	Diabetes	Genetic Variants Associated With Quantitative Glucose Homeostasis Traits Translate to Type 2 Diabetes in Mexican Americans: The GUARDIAN (Genetics Underlying Diabetes in Hispanics) Consortium.	Glucose homeostasis traits	up to 4,176 Mexican American individuals	NA	8q22.2	VPS13B, COX6C	rs13253073-?		6E-6	(MCRI)	0.35	[0.19-0.51] unit decrease	Illumina [693128]	N
1354	chr8	100917632	100917634	rs201375979	32109421	Li C	2020-02-20	Am J Hum Genet	Genome-Wide Association Analysis in Humans Links Nucleotide Metabolism to Leukocyte Telomere Length.	Leukocyte telomere length	78,592 European ancestry individuals	NA	8q22.2	COX6C	rs201375979-?	0.316948	9E-6		0.033236	[0.019-0.048] unit increase	Affymetrix, Illumina, Perlegen [up to 30071938] (imputed)	N
1355	chr8	100966149	100966150	rs187295289	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (severe respiratory symptoms vs population)	1,128 European ancestry cases, 679,531 European ancestry controls, 245 Hispanic or Latin American cases, 94,237 Hispanic or Latin American controls, 74 Black or African American cases, 22,383 Black or African American controls	NA	8q22.2		rs187295289-?	NR	2E-6		0.5650243	[0.34-0.79] unit decrease	Illumina [9906551] (imputed)	N
1355	chr8	100966149	100966150	rs187295289	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid pneumonia vs population)	1,004 European ancestry cases, 680,354 European ancestry controls, 218 Hispanic or Latin American cases, 94,318 Hispanic or Latin American controls, 64 Black or African American cases, 22,412 Black or African American controls	NA	8q22.2		rs187295289-?	NR	1E-6		0.5997758	[0.36-0.84] unit decrease	Illumina [9901720] (imputed)	N
1355	chr8	101011347	101011348	rs2199333	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Keratinocyte cancer (MTAG)	at least 18,538 European ancestry cases, at least 340,302 European ancestry controls	NA	8q22.2	SNORD77	rs2199333-C	0.844955	6E-33		1.1494253	[1.12-1.18]	Affymetrix [7600000] (imputed)	N
1355	chr8	101011347	101011348	rs2199333	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Basal cell carcinoma	31,787 European ancestry cases, 619,351 European ancestry controls	NA	8q22.2	SNORD77	rs2199333-C	0.834925	6E-38		1.1627907	[1.14-1.2]	Affymetrix, Illumina [up to 9061544] (imputed)	N
1355	chr8	101024504	101024505	rs7006527	25855136	Stacey SN	2015-04-09	Nat Commun	New basal cell carcinoma susceptibility loci.	Basal cell carcinoma	4,572 European ancestry cases, 266,358 European ancestry controls	up to 956 European ancestry cases, up to 4,214 European ancestry controls, 526 cases, 528 controls	8q22.2	RGS22	rs7006527-A	0.858	2E-12		1.32	[NR]	Illumina [24988228] (imputed)	N
1355	chr8	101024504	101024505	rs7006527	24403052	Stacey SN	2014-01-08	Hum Mol Genet	Germline sequence variants in TGM3 and RGS22 confer risk of basal cell carcinoma.	Basal cell carcinoma	4,208 European ancestry cases, 109,408 European ancestry controls	up to 1,480 European ancestry cases, up to 4,610 European ancestry controls	8q22.2	RGS22	rs7006527-?	0.86	9E-13		1.3	[1.22-1.41]	Illumina [38500000] (imputed)	N
1355	chr8	101024504	101024505	rs7006527	24403052	Stacey SN	2014-01-08	Hum Mol Genet	Germline sequence variants in TGM3 and RGS22 confer risk of basal cell carcinoma.	Basal cell carcinoma	4,208 European ancestry cases, 109,408 European ancestry controls	up to 1,480 European ancestry cases, up to 4,610 European ancestry controls	8q22.2	RGS22	rs7006527-?		9E-10		1.2987	[1.2-1.43]	Illumina [38500000] (imputed)	N
1355	chr8	101033173	101033174	rs3133683	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	8q22.2	NR	rs3133683-C	0.442432	1E-17		0.0266171	[0.021-0.033] unit increase	NR [19129689] (imputed)	N
1355	chr8	101033736	101033737	rs2126076	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	8q22.2		rs2126076-?	NR	4E-13				NR [~ 8900000] (imputed)	N
1355	chr8	101047447	101047448	rs28884287	33549134	Adolphe C	2021-02-06	Genome Med	Genetic and functional interaction network analysis reveals global enrichment of regulatory T cell genes influencing basal cell carcinoma susceptibility.	Basal cell carcinoma	17,416 European ancestry cases, 375,455 European ancestry controls	NA	8q22.2	RGS22	rs28884287-T	0.154482	1E-33		0.19327906	[0.16-0.22] unit decrease	Affymetrix [7260263] (imputed)	N
1356	chr8	101062137	101062138	rs10099237	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Non-melanoma skin cancer	5,912 European ancestry cases, 181,740 European ancestry controls		8q22.2	RGS22	rs10099237-C	NR	5E-13		1.22	[1.16-1.29]	Affymetrix [5734850] (imputed)	N
1356	chr8	101062887	101062888	rs7818948	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	8q22.2		rs7818948-?	NR	2E-27		0.843726	[0.81-0.87]	NR [685523]	N
1356	chr8	101062887	101062888	rs7818948	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Cancer	56,634 White British ancestry cases, 218,196 White British ancestry controls	NA	8q22.2		rs7818948-?	NR	5E-7		0.953153	[0.93-0.97]	NR [688737]	N
1356	chr8	101096088	101096089	rs113394050	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Skin cancer	25,928 European ancestry cases, 466,275 European ancestry controls, 154 East Asian ancestry cases, 178,572 East Asian ancestry controls	NA	8q22.2		rs113394050-C	NR	2E-20		0.1333	[0.11-0.16] unit decrease	Affymetrix, Illumina [25845421] (imputed)	N
1356	chr8	101161623	101161624	rs141354985	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	8q22.2	NR	rs141354985-?	NR	2E-6		1.17767	[0.7-1.66] unit increase	NR [13958389] (imputed)	N
1356	chr8	101166901	101166902	rs72677917	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	8q22.2	Y_RNA, SPAG1	rs72677917-A	0.184061	6E-9		0.016694197	[0.011-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1356	chr8	101169823	101169823	rs199739054	32737115	Shirai Y	2020-07-31	Ann Rheum Dis	Association of the RPA3-UMAD1 locus with interstitial lung diseases complicated with rheumatoid arthritis in Japanese.	Interstitial lung diseases in rheumatoid arthritis	358 Japanese ancestry cases, 4,550 Japanese ancestry controls	NA	8q22.2	NR	rs199739054-?	0.092	3E-6		1.79	1.40-2.28]	Illumina [5934489] (imputed)	N
1357	chr8	101277639	101277640	rs1660322	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	8q22.2	NR	rs1660322-T	0.686984	5E-15		0.0233139	[0.017-0.029] unit increase	Affymetrix [16580851] (imputed)	N
1357	chr8	101310426	101310426	rs35748790	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	8q22.2	NR	rs35748790-TA	0.3649	3E-6	(EA)	0.0317	[0.018-0.045] unit decrease	Illumina [~ 11800000] (imputed)	N
1357	chr8	101317714	101317715	rs1629834	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	8q22.2		rs1629834-?	NR	1E-9		1.06955	[1.05-1.09]	NR [685523]	N
1357	chr8	101317714	101317715	rs1629834	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Cancer	56,634 White British ancestry cases, 218,196 White British ancestry controls	NA	8q22.2		rs1629834-?	NR	1E-6		1.03459	[1.02-1.05]	NR [688737]	N
1358	chr8	101330208	101330209	rs1371867	21041692	Denny JC	2010-11-01	Circulation	Identification of genomic predictors of atrioventricular conduction: using electronic medical records as a tool for genome science.	Atrioventricular conduction	2,334 European ancestry individuals	NA	8q22.2	RNF19A, ANKRD46	rs1371867-C	0.42	9E-6		2.32	[1.30-3.34] ms increase	Illumina [514999]	N
1358	chr8	101344513	101344514	rs6996156	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	8q22.2		rs6996156-?	NR	7E-8				NR [~ 8900000] (imputed)	N
1358	chr8	101349132	101349133	rs79802045	29317602	Hall LS	2018-01-10	Transl Psychiatry	Genome-wide meta-analyses of stratified depression in Generation Scotland and UK Biobank.	Recurrent major depressive disorder	7,345 European ancestry female cases, 32,211 European ancestry female controls	NA	8q22.2	RNF19A	rs79802045-A	NR	5E-6		0.25	[0.13-0.37] unit decrease	Affymetrix, Illumina [7105178] (imputed)	N
1358	chr8	101372315	101372316	rs17424046	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	8q22.2		rs17424046-T	NR	9E-15		0.027	[0.02-0.034] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
1358	chr8	101381033	101381034	rs56394994	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	8q22.2		rs56394994-G	0.13484	3E-15		0.025801146	[0.019-0.032] unit increase	Affymetrix [93095623] (imputed)	N
1358	chr8	101384290	101384290	rs202045005	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	8q22.2	NR	rs202045005-D	0.134702	6E-23		0.029447	[0.024-0.035] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1358	chr8	101388282	101388283	rs11779535	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	8q22.2	intergenic	rs11779535-A	0.1337	7E-10		0.03262047	[0.022-0.043] unit increase	Affymetrix [~ 2500000] (imputed)	N
1358	chr8	101431800	101431801	rs7830057	27611488	Almoguera B	2016-09-09	Am J Respir Crit Care Med	Identification of Four Novel Loci in Asthma in European American and African American Populations.	Asthma	819 African American non-allergic asthma cases, 2,218 African American allergic asthma cases 4,360 African American controls, 808 European American non-allergic asthma cases, 1,464 European American allergic asthma cases, 11,975 European American controls	NA	8q22.2	MIR4471	rs7830057-?		9E-6		0.111	[0.062-0.16] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1359	chr8	101459319	101459320	rs6988147	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	8q22.2	NR	rs6988147-C	0.139267	3E-16		0.023066	[0.018-0.029] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1359	chr8	101468153	101468154	rs6989934	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	8q22.2		rs6989934-A	NR	2E-9		0.0144	[0.0097-0.0191] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1359	chr8	101469907	101469908	rs7830416	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	8q22.2		rs7830416-A	0.865247	2E-10		0.021164358	[0.015-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1359	chr8	101469907	101469908	rs7830416	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	8q22.2		rs7830416-A	0.865249	2E-12		0.023260431	[0.017-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
1359	chr8	101469907	101469908	rs7830416	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q22.2	NR	rs7830416-A	0.774487	1E-13				Affymetrix, Illumina [24588908] (imputed)	N
1359	chr8	101469907	101469908	rs7830416	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	8q22.2	NR	rs7830416-A	0.861151	4E-14		0.020235	[0.015-0.025] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1359	chr8	101469907	101469908	rs7830416	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q22.2	NR	rs7830416-T	0.147703	6E-14				Affymetrix, Illumina [17210439] (imputed)	N
1359	chr8	101475094	101475095	rs5893521	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-7 levels	3,409 Finnish ancestry individuals	NA	8q22.2	NR	rs5893521-C		8E-7		0.1252	[0.075-0.175] SD units increase	NR [10700000] (imputed)	N
1359	chr8	101478058	101478059	rs75524429	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8q22.2	NR	rs75524429-T	0.01045	3E-8	(SULT1A1)	2.129	NR unit increase	Illumina [1671387] (imputed)	N
1359	chr8	101484611	101484612	rs881491	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	8q22.2	KB-1615E4.2	rs881491-C	0.468714	1E-9		0.013716719	[0.0093-0.0181] unit decrease	Affymetrix [93095623] (imputed)	N
1359	chr8	101484611	101484612	rs881491	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	8q22.2	KB-1615E4.2	rs881491-C	0.468714	4E-14		0.017071815	[0.013-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1359	chr8	101484637	101484638	rs881492	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	8q22.2	KB-1615E4.2	rs881492-G	0.468232	4E-15		0.01779224	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1359	chr8	101484637	101484638	rs881492	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	8q22.2	KB-1615E4.2	rs881492-G	0.468314	1E-9		0.0124812	[0.0084-0.0166] unit decrease	Affymetrix [93095623] (imputed)	N
1359	chr8	101484637	101484638	rs881492	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q22.2	NR	rs881492-G	0.43603	5E-20				Affymetrix, Illumina [23472807] (imputed)	N
1359	chr8	101485006	101485007	rs881485	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	8q22.2	KB-1615E4.2	rs881485-C	0.482648	2E-15		0.017982572	[0.014-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1359	chr8	101485006	101485007	rs881485	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	8q22.2	KB-1615E4.2	rs881485-C	0.482658	2E-16		0.018548809	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1359	chr8	101485006	101485007	rs881485	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	8q22.2	KB-1615E4.2	rs881485-C	0.482738	2E-10		0.014200957	[0.0098-0.0186] unit decrease	Affymetrix [93095623] (imputed)	N
1359	chr8	101485006	101485007	rs881485	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	8q22.2	KB-1615E4.2	rs881485-C	0.482759	5E-13		0.01630022	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1359	chr8	101485006	101485007	rs881485	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	8q22.2	KB-1615E4.2	rs881485-C	0.482758	2E-13		0.016636785	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1359	chr8	101488119	101488120	rs2844044	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	8q22.2		rs2844044-C	NR	2E-10		0.0129	[0.009-0.0168] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
1359	chr8	101505323	101505324	rs60200232	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8q22.2	NR	rs60200232-C	0.04007	7E-9	(GALT)	0.03837	NR unit increase	Illumina [1671387] (imputed)	N
1359	chr8	101514576	101514577	rs2844036	26030696	Cho MH	2015-06-01	Am J Respir Crit Care Med	A Genome-Wide Association Study of Emphysema and Airway Quantitative Imaging Phenotypes.	Percentage gas trapping	3,243 European ancestry chronic obstructive pulmonary disease cases, 901 African American chronic obstructive pulmonary disease cases,  3,062 European ancestry controls, 2,132 African American controls	NA	8q22.3	ANKRD46	rs2844036-A	NR	1E-6	(All)	0.11	[0.067-0.153] unit decrease	Illumina [6900000] (imputed)	N
1359	chr8	101519900	101519901	rs6986151	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	8q22.3	NR	rs6986151-C	0.197	6E-9		1.044	[1.029-1.058]	Affymetrix [15688218] (imputed)	N
1359	chr8	101519900	101519901	rs6986151	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	8q22.3		rs6986151-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1359	chr8	101520097	101520098	rs6468721	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Syntrophorhabdia abundance in stool	5,959 Finnish ancestry individuals	NA	8q22.3		rs6468721-C	0.264578	4E-8		0.0243835	[0.016-0.033] unit increase	Illumina [7980478] (imputed)	N
1359	chr8	101554071	101554072	rs78217154	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Stem cell growth factor beta levels	3,682 Finnish ancestry individuals	NA	8q22.3	NR	rs78217154-C		4E-6		0.3997	[0.23-0.57] SD units decrease	NR [10700000] (imputed)	N
1359	chr8	101556736	101556737	rs2507768	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	8q22.3	NR	rs2507768-T	0.44	7E-6	(IFNalpha_CXCL10_of_CD20p)			Illumina [5084123] (imputed)	N
1360	chr8	101600965	101600966	rs2507780	29751835	Hu H	2018-05-11	BMC Med Genet	Genome-wide association study identified ATP6V1H locus influencing cerebrospinal fluid BACE activity.	Cerebrospinal fluid beta-site APP cleaving enzyme levels	86 European ancestry Alzheimer's disease cases, 163 European ancestry mild cognitive impairment cases, 91 European ancestry controls	NR	8q22.3	SNX31	rs2507780-?	NR	3E-6				Illumina [519442]	N
1360	chr8	101625478	101625479	rs1078186	34062886	Nazarian A	2021-05-01	Genes (Basel)	Genome-Wide Analysis of Sex Disparities in the Genetic Architecture of Lung and Colorectal Cancers.	Colorectal cancer	211 European ancestry female cases, 186 European ancestry male cases, 8,382 European ancestry female controls, 6,312 European ancestry male controls	NA	8q22.3	SNX31	rs1078186-C	0.574	2E-6	(Female)	0.615	[0.51-0.72]	NR [up to 1668415] (imputed)	N
1360	chr8	101633064	101633065	rs140251090	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-hip ratio	1,254 whole genome sequenced European ancestry individuals, 3,071 whole genome sequenced individuals, 29,723 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,053 Mylopotamos (founder/genetic isolate) individuals, 879 Pomak (founder/genetic isolate) individuals	206,053 European ancestry individuals	8q22.3	SNX31	rs140251090-T	0.9974	9E-6		0.553	[0.31-0.8] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1360	chr8	101675583	101675584	rs1693551	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	8q22.3		rs1693551-C	0.47	5E-11		6.56	z score increase	Affymetrix [9061022] (imputed)	N
1360	chr8	101675583	101675584	rs1693551	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	8q22.3	NR	rs1693551-C	0.4643	3E-13				NR [9056863] (imputed)	N
1360	chr8	101675871	101675872	rs2935545	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	8q22.3		rs2935545-A	NR	1E-8		0.0121	[0.008-0.0162] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1360	chr8	101675871	101675872	rs2935545	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	8q22.3		rs2935545-A	NR	5E-10		0.0135	[0.0092-0.0178] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
1360	chr8	101676674	101676675	rs2978098	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Periventricular white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	8q22.3	SNX31	rs2978098-A	0.5462	2E-6		0.0275	[0.016-0.039] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1360	chr8	101676674	101676675	rs2978098	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Diastolic blood pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	8q22.3	SNX31	rs2978098-A	0.54	2E-9		0.165	[0.11-0.22] unit increase	Affymetrix [~ 9800000] (imputed)	N
1360	chr8	101677385	101677386	rs1693567	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	8q22.3		rs1693567-?	NR	1E-15				NR [~ 8900000] (imputed)	N
1360	chr8	101679410	101679411	rs2978102	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (min-P)	26,502 European ancestry individuals	NA	8q22.3	NR	rs2978102-?		5E-8				NR [7428630] (imputed)	N
1360	chr8	101680291	101680292	rs1693560	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical thickness (MOSTest)	26,502 European ancestry individuals	NA	8q22.3	VIT, AC007382.1, STRN, HEATR5B	rs1693560-?		2E-8				NR [7428630] (imputed)	N
1360	chr8	101680291	101680292	rs1693560	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	8q22.3	SNX31	rs1693560-?		3E-18				NR [7428630] (imputed)	N
1360	chr8	101682517	101682518	rs1693576	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	8q22.3	EPHA3	rs1693576-?		3E-15				NR [7428630] (imputed)	N
1360	chr8	101682776	101682777	rs1693575	26545630	Deming Y	2015-09-25	Neurobiol Aging	A potential endophenotype for Alzheimer's disease: cerebrospinal fluid clusterin.	Cerebrospinal fluid clusterin levels	300 Alzheimer's disease cases, 373 controls	NA	8q22.3	SNX31	rs1693575-?		3E-6		0.363	[NR] unit increase	Illumina [5970354] (imputed)	N
1360	chr8	101690534	101690534	rs34118017	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	8q22.3		rs34118017-CA	0.266036	5E-11		0.01703176	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1360	chr8	101706341	101706342	rs11775710	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8q22.3	MGC39715	rs11775710-?	NR	7E-6	(PC 38:5)	1.195912	[0.68-1.72] unit increase	Affymetrix [at least 2500000] (imputed)	N
1360	chr8	101706341	101706342	rs11775710	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8q22.3	MGC39715	rs11775710-?	NR	2E-7	(PC 36:3)	1.360572	[0.85-1.88] unit increase	Affymetrix [at least 2500000] (imputed)	N
1361	chr8	101725049	101725049	rs751242519	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	8q22.3	NR	rs751242519-I	0.169014	3E-10		0.019827	[0.014-0.026] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
1361	chr8	101725924	101725925	rs75799715	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	8q22.3	PABPC1	rs75799715-A	0.0222767449213083	4E-7	(G_Ruminococcus_HB)	1.28563	[0.79-1.78] unit decrease	Illumina [7711310] (imputed)	N
1361	chr8	101727387	101727388	rs3133528	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	8q22.3	NR	rs3133528-C	0.181	3E-8		0.001792	[0.0011-0.0024] unit increase	Affymetrix [NR] (imputed)	N
1361	chr8	101733228	101733229	rs3133548	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	8q22.3		rs3133548-T	NR	2E-8		0.0163	[0.011-0.022] unit increase	Affymetrix, Illumina [20528270] (imputed)	N
1361	chr8	101737074	101737075	rs1786313	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	8q22.3		rs1786313-T	0.3139	7E-9	(conditional-joint)	0.0088	[0.0059-0.0117] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1361	chr8	101739281	101739287	rs141520461	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	8q22.3	PABPC1	rs141520461-C	0.296365	9E-18		0.021349924	[0.016-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1361	chr8	101739281	101739287	rs141520461	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	8q22.3	PABPC1	rs141520461-C	0.296373	1E-14		0.019250276	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1361	chr8	101739281	101739287	rs141520461	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	8q22.3	PABPC1	rs141520461-C	0.296392	3E-17		0.021006543	[0.016-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1361	chr8	101739281	101739287	rs141520461	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	8q22.3	PABPC1	rs141520461-C	0.296401	1E-16		0.020515706	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1361	chr8	101748916	101748917	rs1693584	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	8q22.3	Intergenic	rs1693584-T	0.6841	2E-10	(MTAG)	0.0113	[0.0078-0.0148] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1361	chr8	101748916	101748917	rs1693584	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	8q22.3		rs1693584-T	0.6856	9E-9		0.0087	[0.0058-0.0116] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1361	chr8	101748916	101748917	rs1693584	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	8q22.3	Intergenic	rs1693584-T	0.6856	2E-10	(MTAG)	0.009	[0.0063-0.0117] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1361	chr8	101751913	101751914	rs144954882	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	8q22.3		rs144954882-A	NR	5E-15		0.0762	[0.057-0.095] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
1361	chr8	101751913	101751914	rs144954882	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	8q22.3		rs144954882-A	0.042304	5E-15		0.0761536	[0.057-0.095] unit decrease	Illumina [13476299] (imputed)	N
1361	chr8	101786549	101786550	rs75397706	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	8q22.3		rs75397706-T	0.036738	2E-10		0.0666046	[0.046-0.087] unit decrease	Illumina [13476266] (imputed)	N
1361	chr8	101805541	101805542	rs3133577	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	8q22.3		rs3133577-?	NR	7E-10				NR [~ 8900000] (imputed)	N
1361	chr8	101807229	101807230	rs36061340	23743675	Kapoor M	2013-06-07	Hum Genet	A meta-analysis of two genome-wide association studies to identify novel loci for maximum number of alcoholic drinks.	Alcohol consumption	2,322 European ancestry individuals from 118 families, 2,593 European ancestry individuals		8q22.3	intergenic	rs36061340-?	0.05	7E-6		0.15	[0.091-0.209] unit decrease	Illumina [4058415] (imputed)	N
1361	chr8	101813155	101813156	rs3847153	21989058	Qin Y	2011-10-18	Hum Mol Genet	Association of 8q22.3 locus in Chinese Han with idiopathic premature ovarian failure (POF).	Premature ovarian failure	391 Han Chinese ancestry cases, 895 Han Chinese ancestry controls	400 Han Chinese ancestry cases, 800 Han Chinese ancestry controls	8q22.3	intergenic	rs3847153-?	0.38	9E-8		1.42	[NR]	Affymetrix [642069]	N
1361	chr8	101841545	101841546	rs3108919	19754311	Le Clerc S	2009-09-15	J Infect Dis	Genomewide association study of a rapid progression cohort identifies new susceptibility alleles for AIDS (ANRS Genomewide Association Study 03).	AIDS	85 European ancestry cases, 2,049 European ancestry controls	NA	8q22.3	intergenic	rs3108919-C	0.27	4E-6		2.13	[1.56-2.91]	Illumina [291119]	N
1362	chr8	101919320	101919321	rs931812	18951430	Anney RJ	2008-10-24	Am J Med Genet B Neuropsychiatr Genet	Conduct disorder and ADHD: evaluation of conduct problems as a categorical and quantitative trait in the international multicentre ADHD genetics study.	Attention deficit hyperactivity disorder and conduct disorder	938 European ancestry trios	NA	8q22.3	YWHAZ	rs931812-C	0.74	5E-6				Perlegen [378332]	N
1362	chr8	101947452	101947453	rs3134353	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	8q22.3	NR	rs3134353-A	NR	1E-6		0.015	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
1362	chr8	101947452	101947453	rs3134353	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	8q22.3	ANKRD46, SNX31, PABPC1, FLJ42969, ZNF706, NACAP1	rs3134353-A	0.406446407693097	2E-8		0.01746799	unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1362	chr8	101947452	101947453	rs3134353	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	8q22.3	YWHAZ	rs3134353-T	0.597	7E-6		0.018	[0.0099-0.0251] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1362	chr8	101950037	101950038	rs1470764	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	8q22.3		rs1470764-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1362	chr8	101956876	101956877	rs17365948	22205395	Tekola Ayele F	2011-12-29	Immunogenetics	Genome-wide associated loci influencing interleukin (IL)-10, IL-1Ra, and IL-6 levels in African Americans.	Interleukin-10 levels	704 African American individuals	425 West African individuals	8q22.3	YWHAZ	rs17365948-T	0.08	7E-9		0.06	[NR] unit decrease	Affymetrix [5396780] (imputed)	N
1362	chr8	101958432	101958433	rs3134358	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	8q22.3	NA	rs3134358-T	0.6192	4E-12		0.0122	[0.0087-0.0157] unit increase	NR [~ 27400000] (imputed)	N
1362	chr8	101961909	101961910	rs983583	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	8q22.3	YWHAZ	rs983583-T	0.388	1E-12		0.0086	[0.0062-0.011] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
1362	chr8	101967138	101967139	rs3100052	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	8q22.3	YWHAZ, RN7SL685P	rs3100052-G	0.612755	1E-10		0.014734685	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
1362	chr8	101967138	101967139	rs3100052	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	8q22.3		rs3100052-A	0.3874	1E-8		0.013	[0.0091-0.0169] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
1362	chr8	101967138	101967139	rs3100052	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	8q22.3	YWHAZ, ZNF706	rs3100052-A	0.3886	3E-11		1.0249051		Affymetrix [11880941] (imputed)	N
1362	chr8	101969527	101969528	rs7817485	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	8q22.3	NR	rs7817485-?	NR	5E-9				Affymetrix [~ 8270000] (imputed)	N
1362	chr8	101969527	101969528	rs7817485	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	8q22.3		rs7817485-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1362	chr8	101970118	101970119	rs4734500	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	8q22.3	YWHAZ	rs4734500-T	0.6074	2E-9		0.011848674	[0.008-0.0157] unit decrease	Illumina [9339358] (imputed)	N
1363	chr8	101996444	101996445	rs6999065	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	8q22.3	NR	rs6999065-C	0.942456	3E-10		0.02611	[0.018-0.034] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1363	chr8	102005727	102005728	rs7813423	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	8q22.3		rs7813423-A	0.495322	2E-11		0.015324488	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1363	chr8	102005727	102005728	rs7813423	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	8q22.3		rs7813423-A	0.495326	1E-10		0.014681609	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
1363	chr8	102014591	102014592	rs7814838	32579418	Maukonen M	2020-06-24	J Biol Rhythms	Genetic Associations of Chronotype in the Finnish General Population.	Chronotype (sMEQ score)	7,436 Finnish ancestry individuals	NA	8q22.3	intergenic	rs7814838-C	NR	1E-6		0.616986	[0.37-0.87] unit decrease	Illumina [5842835] (imputed)	N
1363	chr8	102045914	102045915	rs116237496	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	8q22.3	YWHAZ, FLJ42969	rs116237496-T	0.03	1E-8		1.0422	[0.69-1.39] unit increase	Illumina [~ 9000000] (imputed)	N
1363	chr8	102076239	102076240	rs7010917	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	8q22.3	RP11-302J23.1	rs7010917-G	0.121834	2E-14		0.026137508	[0.019-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
1363	chr8	102085028	102085029	rs58503347	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	8q22.3	RP11-302J23.1	rs58503347-A	0.123813	8E-12		0.024220366	[0.017-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
1363	chr8	102085028	102085029	rs58503347	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	8q22.3	RP11-302J23.1	rs58503347-A	0.12377	2E-17		0.029940741	[0.023-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
1363	chr8	102086006	102086007	rs13259960	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	8q22.3	RP11-302J23.1	rs13259960-G	0.124864	3E-13		0.02513569	[0.018-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
1363	chr8	102086006	102086007	rs13259960	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	8q22.3	RP11-302J23.1	rs13259960-G	0.12487	2E-12		0.024122013	[0.017-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
1364	chr8	102139994	102139995	rs10087730	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	8q22.3	ZNF706	rs10087730-T	0.341004155058783	6E-6	(G_Akkermansia_HB)	0.245691	[0.14-0.35] unit decrease	Illumina [7711310] (imputed)	N
1364	chr8	102227922	102227923	rs1264202	21107309	McClay JL	2010-11-24	Neuropsychopharmacology	Genome-wide pharmacogenomic study of neurocognition as an indicator of antipsychotic treatment response in schizophrenia.	Response to antipsychotic treatment in schizophrenia (reasoning)	738 European ancestry, African American, and other ancestry cases	NA	8q22.3	ZNF706	rs1264202-?	0.31	2E-6	(quetiapine)			Affymetrix [492900]	N
1365	chr8	102295994	102295995	rs681304	34162658	Quinn MC	2021-06-23	Cancer Epidemiol Biomarkers Prev	Identification of a locus near ULK1 associated with progression-free survival in ovarian cancer.	Progression free survival in epithelial ovarian cancer treated with carboplatin and paclitaxel	2,352 European ancestry individuals	NA	8q22.3	NR	rs681304-A		2E-6		0.1763	[0.1-0.25] unit increase	Illumina [12764477] (imputed)	N
1366	chr8	102375266	102375267	rs16867579	24556642	Zeng Z	2014-02-18	Caries Res	Genome-wide association study of primary dentition pit-and-fissure and smooth surface caries.	Smooth-surface caries	1006 European ancestry individuals	NA	8q22.3	FKSG17	rs16867579-A	0.0155	1E-6		8.4163	[NR] unit decrease	Illumina [1216189] (imputed)	N
1366	chr8	102431582	102431583	rs1264473	33736632	Zeng Z	2021-03-18	BMC Med Genomics	Genome-wide association study identifies new loci associated with risk of HBV infection and disease progression.	Chronic hepatitis B infection vs asymptomatic persistence	93 Chinese ancestry chronic hepatitis B cases, 92 Chinese ancestry asymptomatic persistence infection controls	NA	8q22.3	GRHL2	rs1264473-C	0.1957	2E-6		3.931	NR	Affymetrix [607153]	N
1366	chr8	102450898	102450899	rs546204	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	8q22.3		rs546204-A	NR	2E-8		0.0124	[0.0081-0.0167] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
1366	chr8	102463601	102463602	rs678347	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	8q22.3	GRHL2	rs678347-A	NR	2E-6		0.0491736	[-0.01328-0.11163] unit decrease	Illumina [8380626] (imputed)	N
1366	chr8	102463601	102463602	rs678347	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	8q22.3	GRHL2	rs678347-A	0.73	1E-7	(EA)	0.08926	[0.056-0.122] unit decrease	Illumina [8380626] (imputed)	N
1366	chr8	102463601	102463602	rs678347	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	8q22.3	GRHL2	rs678347-G	0.42	2E-8		1.08	[1.05-1.11]	Affymetrix, Illumina [up to 9739303] (imputed)	N
1366	chr8	102463601	102463602	rs678347	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	8q22.3	GRHL2	rs678347-G	0.27	7E-9	(EA)	1.1	[1.06-1.13]	Affymetrix, Illumina [up to 9739303] (imputed)	N
1366	chr8	102467705	102467706	rs618854	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q22.3	NR	rs618854-T	0.446848	8E-14				Affymetrix, Illumina [23472807] (imputed)	N
1366	chr8	102471268	102471269	rs1264593	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	8q22.3	KB-1562D12.1	rs1264593-T	0.494957	5E-13		0.016101543	[0.012-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1366	chr8	102471268	102471269	rs1264593	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	8q22.3	NR	rs1264593-T	0.494948	2E-14		0.0146	[0.011-0.018] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1366	chr8	102478958	102478959	rs514192	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Breast cancer	17,881 European ancestry cases, 410,350 European ancestry controls	NA	8q22.3		rs514192-A	NR	5E-8		1.0667	NR	Affymetrix [7846216] (imputed)	N
1366	chr8	102478958	102478959	rs514192	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	8q22.3		rs514192-A	NR	1E-11		1.04	[1.03-1.05]	Affymetrix, Illumina [NR] (imputed)	N
1366	chr8	102478958	102478959	rs514192	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	8q22.3	intergenic	rs514192-A	0.32	6E-9	(EA)	1.05	[1.03-1.07] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
1366	chr8	102481307	102481308	rs2447961	27021288	Brevik EJ	2016-03-29	Am J Med Genet B Neuropsychiatr Genet	Genome-wide analyses of aggressiveness in attention-deficit hyperactivity disorder.	Oppositional defiant disorder dimensions in attention-deficit hyperactivity disorder	750 European ancestry child cases	NA	8q22.3	Intergenic	rs2447961-T	NR	8E-6	(Irritable dimension)	0.3281	[0.18-0.47] unit increase	Illumina [1871025] (imputed)	N
1366	chr8	102485761	102485762	rs572589	28762467	Wadelius M	2017-08-01	Clin Pharmacol Ther	Sulfasalazine-Induced Agranulocytosis Is Associated With the Human Leukocyte Antigen Locus.	Sulfasalazine-induced agranulocytosis	36 European ancestry cases, 5,170 European ancestry untreated controls	NA	8q22.3	intergenic	rs572589-?	NR	3E-7		4.13	[2.40-7.13]	Illumina [9380034] (imputed)	N
1366	chr8	102488323	102488324	rs620621	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip and palate	121 Asian ancestry cases, 159 European ancestry cases, 285 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	8q22.3	NR	rs620621-?	NR	4E-6		2.34	[2.15-2.54]	Illumina [539000] (imputed)	N
1367	chr8	102555473	102555474	rs3735709	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	8q22.3		rs3735709-G	NR	8E-10		0.0266	[0.018-0.035] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
1367	chr8	102566423	102566424	rs7015376	33824429	Fjukstad KK	2021-04-06	Pharmacogenomics J	Genetic variants associated with cardiometabolic abnormalities during treatment with selective serotonin reuptake inhibitors: a genome-wide association study.	LDL levels x SSRI levels (escitalopram or citalopram) interaction in schizophrenia or bipolar disorder	181 European ancestry individuals	NA	8q22.3	GRHL2	rs7015376-T	NR	3E-7		12.0039	[7.6-16.4] unit decrease	Illumina [NR] (imputed)	N
1367	chr8	102596209	102596210	rs6988306	23897914	Wang H	2013-07-29	Pediatrics	A genome-wide association study (GWAS) for bronchopulmonary dysplasia.	Bronchopulmonary dysplasia	117 African American newborn cases, 108 African American newborn controls, 448 Hispanic newborn cases, 460 Hispanic newborn controls, 74 Asian or Pacific Islander ancestry newborn cases, 93 Asian or Pacific Islander ancestry newborn controls, 174 European ancestry newborn cases, 216 European ancestry newborn controls, 14 newborn cases, 22 newborn controls	371 newborn cases, 424 newborn controls	8q22.3	GRHL2	rs6988306-?	0.78	3E-6	(EA)	2.7778	[NR]	Illumina [1795103]	N
1368	chr8	102666007	102666008	rs10955269	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	8q22.3		rs10955269-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1368	chr8	102667366	102667367	rs141603042	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental extreme longevity (95 years and older)	1,339 middle-aged British cases, 40,934 middle-aged British controls	NA	8q22.3	NR	rs141603042-?	NR	9E-6		0.01376	[0.0077-0.0198] unit decrease	Affymetrix [9658292] (imputed)	N
1368	chr8	102729474	102729475	rs7816613	24939585	Fransen E	2014-06-18	Eur J Hum Genet	Genome-wide association analysis demonstrates the highly polygenic character of age-related hearing impairment.	Age-related hearing impairment	1,489 European ancestry individuals	NA	8q22.3	NCALD	rs7816613-?		8E-6	(PC1)	0.1378	[NR] unit increase	Illumina [4167292] (imputed)	N
1368	chr8	102750596	102750597	rs142449193	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	NA	8q22.3	NCALD	rs142449193-C	0.9536	8E-10		0.4549	[0.31-0.6] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1369	chr8	102773487	102773488	rs1557336	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	8q22.3		rs1557336-?	NR	4E-11				NR [~ 8900000] (imputed)	N
1369	chr8	102815485	102815486	rs1074703	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	8q22.3		rs1074703-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1369	chr8	102832197	102832198	rs12544026	29071344	Zhou H	2017-10-25	JAMA Psychiatry	Genetic Risk Variants Associated With Comorbid Alcohol Dependence and Major Depression.	Major depression and alcohol dependence	3,041 African American individuals, 1,618 European ancestry individuals	1,612 African American individuals, 1,551 European ancestry individuals	8q22.3	intergenic	rs12544026-G	0.136	1E-6	(AA)	0.969	unit decrease	Illumina [at least 5086170] (imputed)	N
1369	chr8	102832404	102832405	rs13255004	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	8q22.3	NCALD	rs13255004-?	NR	1E-8		0.0339198	[0.022-0.046] unit increase	Illumina [4804024] (imputed)	N
1369	chr8	102841030	102841031	rs7827941	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	8q22.3		rs7827941-A	NR	8E-10		0.0119	[0.0082-0.0156] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1370	chr8	102899475	102899476	rs513159	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls	NA	8q22.3	NCALD	rs513159-T	0.233686	5E-8		0.053433497	[0.034-0.073] unit decrease	Affymetrix [7288503] (imputed)	N
1370	chr8	102902996	102902997	rs487987	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls, 20,367 East Asian ancestry cases, 158,359 East Asian ancestry controls	NA	8q22.3		rs487987-C	NR	1E-8		0.0424	[0.028-0.057] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1370	chr8	102944862	102944863	rs517811	20125193	Cirulli ET	2010-02-03	Eur J Hum Genet	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American individuals, up to 74 South Asian ancestry individuals	NA	8q22.3	NCALD	rs517811-?	NR	5E-6	(TrailsB)			Illumina [up to 563855]	N
1370	chr8	103003702	103003703	rs538641	26631737	Teumer A	2015-12-02	Diabetes	Genome-wide Association Studies Identify Genetic Loci Associated With Albuminuria in Diabetes.	Microalbuminuria	up to 54,116 European ancestry cases	NA	8q22.3	NCALD	rs538641-A	0.05	8E-6		0.28	[0.16-0.4] unit increase	Affymetrix, Illumina [2191945] (imputed)	N
1371	chr8	103042177	103042178	rs16868899	32438682	Mateos MK	2020-05-19	Cancers (Basel)	Genome-Wide Association Meta-Analysis of Single-Nucleotide Polymorphisms and Symptomatic Venous Thromboembolism during Therapy for Acute Lymphoblastic Leukemia and Lymphoma in Caucasian Children.	Childhood ALL/LBL (acute lymphoblastic leukemia/lymphoblastic lymphoma) treatment-related venous thromboembolism	92 European ancestry cases, 1,481 European ancestry controls	NA	8q22.3	NCALD	rs16868899-?		4E-6		6.24	[2.87-13.57]	Illumina [NR] (imputed)	N
1371	chr8	103047846	103047847	rs10113810	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Perceived sweetness of sucrose	686 European ancestry twins	NA	8q22.3	NCALD	rs10113810-A	0.54	4E-6		0.48	[0.28-0.68] unit increase	Illumina [5833901] (imputed)	N
1371	chr8	103048809	103048810	rs7817714	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Cerebral amyloid angiopathy	1,673 cases, 1,134 controls	NA	8q22.3	NCALD	rs7817714-C	0.859	9E-6		0.4448	[0.25-0.64] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1371	chr8	103052376	103052377	rs16868941	21876539	Amin N	2011-08-30	Mol Psychiatry	Genome-wide association analysis of coffee drinking suggests association with CYP1A1/CYP1A2 and NRCAM.	Coffee consumption	18,176 European ancestry individuals	7,929 European ancestry individuals	8q22.3	NCALD	rs16868941-A	NR	8E-7		0.056	[0.04-0.08] unit increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1371	chr8	103067626	103067627	rs2155235	30794219	MacInnes SJ	2019-02-01	Clin Orthop Relat Res	The 2018 Otto Aufranc Award: How Does Genome-wide Variation Affect Osteolysis Risk After THA?	Osteolysis in total hip arthroplasty	1,096 European ancestry cases, 2,418 European ancestry controls	NA	8q22.3	NR	rs2155235-T	0.12	2E-6		1.57	[1.31-1.89]	Illumina [5411522] (imputed)	N
1371	chr8	103077789	103077790	rs636089	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	8q22.3		rs636089-C	NR	1E-9		0.0126	[0.0085-0.0167] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
1371	chr8	103077789	103077790	rs636089	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	8q22.3	NCALD	rs636089-C	0.384315	3E-14		0.017295616	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1371	chr8	103077789	103077790	rs636089	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q22.3	NR	rs636089-T	0.626149	5E-14				Affymetrix, Illumina [22063850] (imputed)	N
1371	chr8	103077789	103077790	rs636089	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	8q22.3	NR	rs636089-T	0.617679	5E-16		0.015728	[0.012-0.02] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
1371	chr8	103077789	103077790	rs636089	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	8q22.3		rs636089-?	NR	5E-17				NR [~ 8900000] (imputed)	N
1371	chr8	103096977	103096978	rs12155739	28077804	Ben-Avraham D	2017-01-10	Aging (Albany NY)	The complex genetics of gait speed: genome-wide meta-analysis approach.	Gait speed in old age	31,478 European ancestry older adults	2,588 European ancestry older adults	8q22.3	NCALD	rs12155739-C	NR	2E-6		0.0396	[0.023-0.056] m/sec decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1371	chr8	103114572	103114573	rs501344	26112879	Rudkowska I	2015-06-20	J Nutrigenet Nutrigenomics	Interaction between Common Genetic Variants and Total Fat Intake on Low-Density Lipoprotein Peak Particle Diameter: A Genome-Wide Association Study.	LDL peak particle diameter (total fat intake interaction)	541 European ancestry individuals	NA	8q22.3	NCALD	rs501344-A	0.4	5E-6		0.03	[0.01-0.05] unit decrease	Illumina [1632371] (imputed)	N
1371	chr8	103131299	103131300	rs659398	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	8q22.3		rs659398-?	NR	6E-26				NR [~ 8900000] (imputed)	N
1372	chr8	103190070	103190071	rs1265120	28166215	Hobbs BD	2017-02-06	Nat Genet	Genetic loci associated with chronic obstructive pulmonary disease overlap with loci for lung function and pulmonary fibrosis.	Chronic obstructive pulmonary disease	11,157 European ancestry cases, 36,699 European ancestry controls, 1,142 African American cases, 2,380 African American controls, 199 Korean ancestry cases, 6,741 Korean ancestry controls, 52 Hispanic cases, 548 Hispanic controls.	12,051 European ancestry cases, 11,111 European ancestry controls, 153 Korean ancestry cases, 205 Korean ancestry controls.	8q22.3	RRM2B	rs1265120-C	0.385	4E-6		1.038	[0.993-1.085] (Stage 1 meta-analysis)	Affymetrix, Illumina [NR] (imputed)	N
1372	chr8	103215227	103215228	rs74589258	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	8q22.3	RRM2B	rs74589258-G	0.07	1E-11	(Ribonucleoside-diphosphate reductase subunit M2 B, RRM2B.8925.25.3)	0.33	[0.23-0.43] unit increase	Affymetrix [10572788] (imputed)	N
1372	chr8	103216685	103216686	rs78020802	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RRM2B	5,367 Icelandic ancestry individuals	NA	8q22.3		rs78020802-A	0.05781	7E-46		0.566297	[0.49-0.64] unit increase	Illumina [7506463] (imputed)	N
1372	chr8	103216897	103216898	rs1052069	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RRM2B	5,361 Icelandic ancestry individuals	NA	8q22.3		rs1052069-A	0.05773	1E-16		0.333644	[0.25-0.41] unit increase	Illumina [7506463] (imputed)	N
1372	chr8	103225978	103225978	rs111489051	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	8q22.3	RRM2B	rs111489051-AC	0.111341	3E-11		0.023293119	[0.016-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
1372	chr8	103230338	103230339	rs28928597	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	8q22.3	RRM2B	rs28928597-A	0.94515625	7E-31	(RRM2B, 8925_25_3)	0.61302197	[0.51-0.72] unit decrease	Illumina [> 1000000] (imputed)	N
1372	chr8	103230338	103230339	rs28928597	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	8q22.3	RRM2B	rs28928597-A	0.94515625	1E-10	(RRM2B, 8854_59_3)	0.3571998	[0.25-0.47] unit decrease	Illumina [> 1000000] (imputed)	N
1372	chr8	103248799	103248800	rs28999676	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	8q22.3	NR	rs28999676-C	0.112428	2E-12		0.020569	[0.015-0.026] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1372	chr8	103248799	103248800	rs28999676	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	8q22.3		rs28999676-?	NR	6E-10				NR [~ 8900000] (imputed)	N
1372	chr8	103251254	103251255	rs2290707	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	8q22.3		rs2290707-A	0.351321	5E-12		0.0270515	[0.019-0.035] unit increase	Illumina [13476299] (imputed)	N
1372	chr8	103251254	103251255	rs2290707	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular volume	108,256 Japanese ancestry individuals	NA	8q22.3	RRM2B	rs2290707-?	NR	3E-15		0.03638	[0.027-0.045] unit increase novel	Illumina [6108953] (imputed)	N
1372	chr8	103251254	103251255	rs2290707	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin	108,054 Japanese ancestry individuals	NA	8q22.3	RRM2B	rs2290707-?	NR	3E-10		0.02893	[0.02-0.038] unit increase novel	Illumina [6108953] (imputed)	N
1373	chr8	103294278	103294279	rs3018534	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	8q22.3		rs3018534-C	NR	3E-10		0.0108	[0.0075-0.0141] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
1373	chr8	103294769	103294770	rs2445949	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	8q22.3		rs2445949-G	NR	8E-17		0.0166	[0.013-0.021] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
1373	chr8	103294769	103294770	rs2445949	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q22.3	NR	rs2445949-G	0.528624	6E-11				Affymetrix, Illumina [24332387] (imputed)	N
1373	chr8	103297706	103297707	rs2293982	31586183	Niazi Y	2019-10-04	Mutagenesis	Distinct pathways associated with chromosomal aberration frequency in a cohort exposed to genotoxic compounds compared to general population.	Chromosomal aberration frequency (total)	866 European and unknown ancestry individuals	NA	8q22.3	UBR5, RRM2B	rs2293982-?	NR	1E-6		0.15	[0.09-0.21] unit increase	Illumina [> 2600000] (imputed)	N
1373	chr8	103304023	103304024	rs398086861	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	8q22.3		rs398086861-C	0.370685	3E-20		0.0344919	[0.027-0.042] unit increase	Illumina [13476266] (imputed)	N
1373	chr8	103308399	103308400	rs7840202	27490719	Bacelis J	2016-08-04	PLoS One	Literature-Informed Analysis of a Genome-Wide Association Study of Gestational Age in Norwegian Women and Children Suggests Involvement of Inflammatory Pathways.	Gestational age at birth in labor-initiated deliveries (child effect)	884 Norwegian ancestry children	NA	8q22.3	NR	rs7840202-C		4E-6				NR [525577]	N
1373	chr8	103308399	103308400	rs7840202	22833209	Hu X	2011-11-15	Transl Psychiatry	Genome-wide association study identifies multiple novel loci associated with disease progression in subjects with mild cognitive impairment.	Rate of cognitive decline in mild cognitive impairment (time interaction)	822 European ancestry individuals	NA	8q22.3	UBR5	rs7840202-C		4E-14				Illumina [233603]	N
1373	chr8	103339660	103339661	rs2512412	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	8q22.3		rs2512412-T	NR	8E-23		0.0196	[0.016-0.024] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
1373	chr8	103339660	103339661	rs2512412	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	8q22.3	UBR5	rs2512412-T	0.551257	2E-11		0.0141036	[0.01-0.018] unit increase	Affymetrix [93095623] (imputed)	N
1373	chr8	103339660	103339661	rs2512412	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	8q22.3	NR	rs2512412-T	0.551825	3E-16		0.014922	[0.011-0.018] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
1373	chr8	103339660	103339661	rs2512412	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	8q22.3	NR	rs2512412-T	0.551968	2E-11		0.013053	[0.0093-0.0168] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
1373	chr8	103353729	103353730	rs7827839	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	8q22.3	UBR5	rs7827839-T	0.551537	4E-9		0.013059588	[0.0087-0.0174] unit increase	Affymetrix [93095623] (imputed)	N
1373	chr8	103353729	103353730	rs7827839	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q22.3	NR	rs7827839-T	0.535027	4E-29				Affymetrix, Illumina [24246363] (imputed)	N
1373	chr8	103353729	103353730	rs7827839	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q22.3	NR	rs7827839-T	0.53337	2E-17				Affymetrix, Illumina [20825802] (imputed)	N
1373	chr8	103353729	103353730	rs7827839	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	8q22.3		rs7827839-?	NR	9E-12				NR [~ 8900000] (imputed)	N
1373	chr8	103356225	103356226	rs28552587	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	8q22.3	NR	rs28552587-A	0.5641	3E-8		1.034	[1.02-1.05]	Affymetrix, Illumina [NR] (imputed)	N
1373	chr8	103367598	103367599	rs10088255	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	8q22.3	Intergenic	rs10088255-A	0.4568	5E-8	(MTAG)	0.0098	[0.0063-0.0133] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1373	chr8	103389499	103389500	rs4734619	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	8q22.3	Intergenic	rs4734619-C	0.2308	5E-9		0.0135	[0.009-0.018] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1373	chr8	103399203	103399204	rs770030992	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA		UBR5	rs770030992-C	0.423689	9E-10		0.013968873	[0.0095-0.0184] unit increase	Affymetrix [93095623] (imputed)	N
1374	chr8	103438837	103438838	rs13268883	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	8q22.3		rs13268883-T	NR	4E-10		0.0203	[0.014-0.027] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1374	chr8	103441484	103441485	rs201837958	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	119,629 East Asian ancestry individuals	NA	8q22.3	NR	rs201837958-C	0.580832	3E-11		0.027954	[0.02-0.036] SD units decrease	Affymetrix, Illumina [16286228] (imputed)	N
1374	chr8	103441636	103441637	rs9773443	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota (beta diversity)	858 Metropolitan French ancestry individuals	NA	8q22.3	NR	rs9773443-G	0.261	2E-9	(Unifrac metric)	5.9131093	NR z-score increase	Illumina [5293637] (imputed)	N
1374	chr8	103443071	103443071	rs781671072	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA			rs781671072-CTT	0.166912	8E-13		0.021953633	[0.016-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
1374	chr8	103443409	103443410	rs79702879	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	8q22.3		rs79702879-C	0.146138	4E-12		0.022221625	[0.016-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1374	chr8	103443409	103443410	rs79702879	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	8q22.3	NR	rs79702879-C	0.145221	1E-11		0.018503	[0.013-0.024] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1374	chr8	103444539	103444540	rs13270182	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	121,047 East Asian ancestry individuals	NA	8q22.3	NR	rs13270182-T	0.52549	5E-20		0.037646	[0.03-0.046] SD units decrease	Affymetrix, Illumina [16286195] (imputed)	N
1374	chr8	103452307	103452308	rs34620785	28060188	Hamet P	2017-01-16	J Hypertens	PROX1 gene CC genotype as a major determinant of early onset of type 2 diabetes in slavic study participants from Action in Diabetes and Vascular Disease: Preterax and Diamicron MR Controlled Evaluation study.	Type 2 diabetes (age of onset)	2,307 Celtic ancestry individuals, 1,102 Slavic ancestry individuals	NA	8q22.3	UBR5, ODF1	rs34620785-?	NR	2E-6				Affymetrix [5045527] (imputed)	N
1374	chr8	103495883	103495884	rs11775092	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Periventricular white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	8q22.3	RPS12P15	rs11775092-A	0.0174	9E-6		0.1091	[0.061-0.157] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1374	chr8	103506056	103506057	rs2961111	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	8q22.3	NR	rs2961111-C	0.834776	6E-10		0.016514	[0.011-0.022] unit decrease	NR [NR]	N
1374	chr8	103507581	103507581	rs35521407	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	8q22.3		rs35521407-CT	NR	2E-11		0.0225	[0.016-0.029] unit increase	Affymetrix, Illumina [20529698] (imputed)	N
1374	chr8	103507581	103507581	rs35521407	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	8q22.3	NR	rs35521407-CT	NR	4E-9		0.0194	[0.013-0.026] unit increase	Affymetrix [9000000] (imputed)	N
1374	chr8	103536104	103536105	rs146278598	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial squamous cell lung carcinoma	367 European ancestry cases, 31,563 European ancestry controls	NA	8q22.3	KB-1980E6.3	rs146278598-C	0.013	3E-6		4.95	[2.53-9.67]	Illumina [7959153] (imputed)	N
1374	chr8	103537382	103537383	rs28459406	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	8q22.3		rs28459406-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1374	chr8	103541165	103541166	rs17186084	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	8q22.3	KB-1980E6.3	rs17186084-A	0.085732	8E-11		0.026244838	[0.018-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
1374	chr8	103541165	103541166	rs17186084	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q22.3	NR	rs17186084-G	0.91694	1E-14				Affymetrix, Illumina [17210439] (imputed)	N
1374	chr8	103541165	103541166	rs17186084	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	8q22.3	NR	rs17186084-G	0.914011	2E-16		0.028297	[0.022-0.035] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1375	chr8	103547498	103547499	rs185645716	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	8q22.3	KB-1980E6.3	rs185645716-T	0.086047	7E-9		0.023306686	[0.015-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
1375	chr8	103547738	103547739	rs2033562	26028593	Li M	2015-06-01	Nat Commun	Identification of new susceptibility loci for IgA nephropathy in Han Chinese.	IgA nephropathy	1,434 Han Chinese ancestry cases, 10,661 Han Chinese ancestry controls	6,879 Han Chinese ancestry cases, 9,019 Han Chinese ancestry controls	8q22.3	KLF10, ODF1	rs2033562-C	0.477	1E-9		1.128	[1.085-1.173]	Illumina [3792949] (imputed)	N
1375	chr8	103561977	103561978	rs71518872	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Colon cancer	3,793 European ancestry cases, 410,350 European ancestry controls	NA	8q22.3		rs71518872-G	0.015359	1E-8		1.5725743	NR	Affymetrix [7846216] (imputed)	N
1375	chr8	103577864	103577865	rs2511713	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	IgM levels	14,442 Icelandic ancestry individuals	2,157 Swedish ancestry individuals	8q22.3	ODF1	rs2511713-G	0.277	2E-24		0.13	NR SD units decrease	Illumina [21568490] (imputed)	N
1375	chr8	103577864	103577865	rs2511713	28165464	Law PJ	2017-02-06	Nat Commun	Genome-wide association analysis implicates dysregulation of immunity genes in chronic lymphocytic leukaemia.	Chronic lymphocytic leukemia	4,478 European ancestry cases and 13,213 European ancestry controls.	1,722 European ancestry cases and 4,385 European ancestry controls.	8q22.3	ODF1	rs2511713-G	NR	6E-8		1.17	[1.1-1.23]	Affymetrix, Illumina [> 10000000] (imputed)	N
1375	chr8	103578873	103578874	rs2511714	26956414	Berndt SI	2016-03-09	Nat Commun	Meta-analysis of genome-wide association studies discovers multiple loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	3,100 European ancestry cases, 7,667 European ancestry controls	1,958 cases,  5,530 controls	8q22.3	ODF1	rs2511714-G	0.391	2E-7		1.19	[1.11-1.27]	Affymetrix, Illumina [~ 8500000] (imputed)	N
1375	chr8	103578873	103578874	rs2511714	23770605	Berndt SI	2013-06-16	Nat Genet	Genome-wide association study identifies multiple risk loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	2,179 European ancestry cases, 6,221 European ancestry controls	1,709 European ancestry cases, 6,318 European ancestry controls	8q22.3	ODF1, KLF10	rs2511714-G	0.41	5E-8		1.19	[1.12-1.27]	Illumina [549934]	N
1375	chr8	103584628	103584629	rs62523287	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Eubacterium Q abundance in stool	5,959 Finnish ancestry individuals	NA	8q22.3		rs62523287-T	0.0329838	3E-8		0.0627421	[0.04-0.085] unit increase	Illumina [7980478] (imputed)	N
1375	chr8	103607419	103607420	rs17437436	34050765	Zhang L	2021-05-29	J Clin Endocrinol Metab	Joint genome-wide association analyses identified 49 novel loci for age at natural menopause.	Age at menopause	181,219 European ancestry individuals	NA	8q22.3		rs17437436-T	0.91	6E-9		0.16	unit increase	Illumina [2398641] (imputed)	N
1375	chr8	103611259	103611260	rs2436928	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	8q22.3	NR	rs2436928-A	NR	3E-12		0.024	[0.017-0.031] unit decrease	Affymetrix [9000000] (imputed)	N
1375	chr8	103639940	103639941	rs6998277	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NA	8q22.3	intergenic	rs6998277-C	0.21	2E-6		1.07	[1.04-1.10]	Affymetrix, Illumina [~ 2300000] (imputed)	N
1375	chr8	103641667	103641668	rs7816388	31586183	Niazi Y	2019-10-04	Mutagenesis	Distinct pathways associated with chromosomal aberration frequency in a cohort exposed to genotoxic compounds compared to general population.	Chromosomal aberration frequency (chromatid type)	866 European and unknown ancestry individuals	NA	8q22.3	NR	rs7816388-?	NR	2E-6		0.12	[0.07-0.16] unit increase	Illumina [> 2600000] (imputed)	N
1375	chr8	103641790	103641791	rs2436958	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	8q22.3		rs2436958-C	NR	1E-15		0.0188	[0.014-0.024] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
1375	chr8	103642473	103642474	rs2511661	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	8q22.3	NR	rs2511661-T	0.14	4E-14		0.0197	[0.015-0.025] unit increase	NR [NR]	N
1375	chr8	103645812	103645813	rs2436962	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	8q22.3	KLF10	rs2436962-A	0.1799	3E-10		0.0263	[0.018-0.035] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1375	chr8	103645812	103645813	rs2436962	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	8q22.3	KLF10	rs2436962-A	0.1391	5E-6		0.02564	[0.015-0.037] mg/dL increase	Affymetrix, Illumina [8217339] (imputed)	N
1375	chr8	103645812	103645813	rs2436962	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	8q22.3	NR	rs2436962-A	0.8152	2E-7	(women)	0.0313	[0.02-0.043] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1375	chr8	103661729	103661730	rs1050969	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	8q22.3		rs1050969-C	NR	4E-8		0.0353	[0.023-0.048] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1375	chr8	103661729	103661730	rs1050969	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	8q22.3		rs1050969-?	NR	4E-11				NR [~ 8900000] (imputed)	N
1375	chr8	103662851	103662852	rs13275089	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	8q22.3	KLF10	rs13275089-T	0.626003	2E-17		0.00334731	[0.0026-0.0041] unit increase	Affymetrix [13995440] (imputed)	N
1375	chr8	103662851	103662852	rs13275089	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	8q22.3	KLF10	rs13275089-T	0.63	6E-17		8.36	z-score increase	Affymetrix [4312306] (imputed)	N
1375	chr8	103662851	103662852	rs13275089	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Alanine aminotransferase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	8q22.3	KLF10	rs13275089-?		3E-8		0.0244	[0.016-0.033] unit decrease	Illumina [31500000] (imputed)	N
1375	chr8	103663048	103663052	rs10532135	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	8q22.3		rs10532135-C	NR	1E-20		0.0193	[0.015-0.023] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
1375	chr8	103663911	103663912	rs11552577	31497858	Dumitrescu L	2019-09-01	Brain	Sex differences in the genetic predictors of Alzheimer's pathology.	Neurofibrillary tangles	2,701 European ancestry men	NA	8q22.3	KLF10	rs11552577-G	0.174339	7E-6		0.420224	[0.24-0.6] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1375	chr8	103669990	103669991	rs4734654	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	8q22.3	NR	rs4734654-?	NR	2E-8		1.05443	[1.04-1.07]	Affymetrix, Illumina [12447948] (imputed)	N
1375	chr8	103676070	103676072	rs370102919	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	28,092 non-Hispanic White ancestry cases, 50,487 non-Hispanic White ancestry controls, 31,852 European ancestry cases, 428,084 European ancestry controls	NA		NR	rs370102919-G	NR	4E-8		0.9615		Affymetrix [9869154] (imputed)	N
1376	chr8	103685171	103685172	rs17773903	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	8q22.3		rs17773903-G	0.370566	2E-10		0.014559393	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
1376	chr8	103685171	103685172	rs17773903	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	8q22.3		rs17773903-G	0.370481	2E-18		0.020350177	[0.016-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1376	chr8	103688380	103688381	rs10106298	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	8q22.3	NR	rs10106298-G	0.627265	7E-12		0.0144349	[0.01-0.019] unit decrease	NR [NR]	N
1376	chr8	103688380	103688381	rs10106298	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	8q22.3	NR	rs10106298-G	NR	9E-6		1.0526316	[NR]	Illumina [7158791] (imputed)	N
1376	chr8	103724897	103724898	rs13278114	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Skin reflectance (Melanin index)	720 South Asian ancestry individuals		8q22.3	NR	rs13278114-G	NR	7E-6		0.24775	[0.14-0.36] unit increase	Affymetrix, Illumina [at least 398118] (imputed)	N
1376	chr8	103731418	103731419	rs2511683	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Number of common colds	43,826 European ancestry cases, 15,720 European ancestry controls	NA	8q22.3	NR	rs2511683-?	NR	9E-6		0.0243	[0.014-0.035] unit increase	Illumina [at least 560000] (imputed)	N
1376	chr8	103733631	103733632	rs9642793	29064910	Kure Fischer E	2017-10-23	Int Clin Psychopharmacol	A molecular pathway analysis informs the genetic risk for arrhythmias during antipsychotic treatment.	Antipsychotic drug-induced QTc interval change in schizophrenia	434 European ancestry individuals, 202 African ancestry individuals, 25 individuals	NA	8q22.3	NR	rs9642793-A	NR	4E-6		531.0	unit decrease	Affymetrix, Perlegen [1785543] (imputed)	N
1376	chr8	103799093	103799094	rs62522567	32913026	Knol MJ	2020-09-10	Neurology	Association of common genetic variants with brain microbleeds: A Genome-wide Association Study.	Cerebral microbleeds (lobar)	2,035 European ancestry cases, 27 Chinese ancestry cases, 36 Malay ancestry cases, 81 African American cases, 21,785 European ancestry controls, 88 Chinese ancestry controls, 129 Malay ancestry controls, 304 African American controls	NA	8q22.3	GASAL1	rs62522567-A	0.92	4E-7		0.73	NR	Affymetrix, Illumina [NR] (imputed)	N
1376	chr8	103799093	103799094	rs62522567	32913026	Knol MJ	2020-09-10	Neurology	Association of common genetic variants with brain microbleeds: A Genome-wide Association Study.	Cerebral microbleeds	3,321 European ancestry cases, 42 Chinese ancestry cases, 75 Malay ancestry cases, 118 African American cases, 21,785 European ancestry controls, 88 Chinese ancestry controls, 129 Malay ancestry controls, 304 African American controls	NA	8q22.3	GASAL1	rs62522567-A	0.92	7E-6		0.79	NR	Affymetrix, Illumina [NR] (imputed)	N
1376	chr8	103800297	103800298	rs2513900	26030696	Cho MH	2015-06-01	Am J Respir Crit Care Med	A Genome-Wide Association Study of Emphysema and Airway Quantitative Imaging Phenotypes.	Airway imaging phenotypes	5,385 European ancestry chronic obstructive pulmonary disease cases, 901 African American chronic obstructive pulmonary disease cases, 3,613 European ancestry controls, 2,132 African American controls	NA	8q22.3	AZIN1	rs2513900-C	NR	3E-7	(WAP, All)	0.23	[0.15-0.31] unit increase	Illumina [7600000] (imputed)	N
1377	chr8	103826036	103826037	rs2436854	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	8q22.3	GASAL1	rs2436854-G	0.73614	9E-14		0.00192583	[0.0014-0.0024] unit increase	Affymetrix [13995440] (imputed)	N
1377	chr8	103836252	103836253	rs972142	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	8q22.3		rs972142-?	NR	4E-17				NR [~ 8900000] (imputed)	N
1377	chr8	103839163	103839164	rs1062315	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	8q22.3		rs1062315-T	NR	1E-12		0.0158	[0.011-0.02] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
1377	chr8	103852406	103852407	rs2436845	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	8q22.3	AZIN1	rs2436845-A	0.4343	1E-9		0.02204727	[0.015-0.029] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1377	chr8	103852406	103852407	rs2436845	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	8q22.3	AZIN1	rs2436845-A	0.4342	3E-9		0.02156075	[0.014-0.029] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1377	chr8	103852406	103852407	rs2436845	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	8q22.3	AZIN1	rs2436845-A	0.4343	4E-9		0.02140944	[0.014-0.029] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1377	chr8	103852406	103852407	rs2436845	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	8q22.3	AZIN1	rs2436845-A	0.4343	1E-9		0.02223366	[0.015-0.029] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1377	chr8	103856862	103856864	rs58965232	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	8q22.3	AZIN1	rs58965232-T	0.377554	3E-20		0.021393051	[0.017-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1377	chr8	103862951	103862952	rs746070511	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	8q22.3	AZIN1	rs746070511-C	0.0019	6E-6		1.1605	[0.66-1.66] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1377	chr8	103875612	103875613	rs2436851	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	8q22.3	AZIN1	rs2436851-A	0.74	2E-10		6.35	z-score increase	Affymetrix [4311822] (imputed)	N
1377	chr8	103876182	103876183	rs1802539	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	8q22.3		rs1802539-G	0.817402	3E-8		0.0282097	[0.018-0.038] unit decrease	NR [11722792] (imputed)	N
1377	chr8	103876324	103876325	rs2679745	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	8q22.3	NR	rs2679745-G	0.8139	2E-8		0.0278	[0.018-0.037] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1377	chr8	103876324	103876325	rs2679745	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	8q22.3		rs2679745-?	NR	9E-10				NR [~ 8900000] (imputed)	N
1377	chr8	103876779	103876780	rs2247355	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	8q22.3		rs2247355-C	0.817685	5E-9		0.0295883	[0.02-0.04] unit increase	NR [11722792] (imputed)	N
1377	chr8	103876779	103876780	rs2247355	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	8q22.3		rs2247355-T	NR	6E-11		0.0419	[0.029-0.054] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1377	chr8	103876779	103876780	rs2247355	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	8q22.3		rs2247355-T	NR	2E-12		0.0189	[0.014-0.024] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
1377	chr8	103876779	103876780	rs2247355	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	8q22.3	AZIN1	rs2247355-C	0.817319	6E-17		0.0205787	[0.016-0.025] unit decrease	Affymetrix [NR] (imputed)	N
1377	chr8	103876779	103876780	rs2247355	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	8q22.3	AZIN1	rs2247355-C	0.817346	4E-12		0.0176676	[0.013-0.023] unit decrease	Affymetrix [NR] (imputed)	N
1377	chr8	103876779	103876780	rs2247355	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	8q22.3	AZIN1	rs2247355-T	0.181421	4E-8		0.04316449	[0.028-0.059] unit decrease	Affymetrix [7288503] (imputed)	N
1377	chr8	103881010	103881011	rs2679741	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	8q22.3		rs2679741-G	NR	2E-16		0.018	[0.014-0.022] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
1377	chr8	103883629	103883630	rs2513877	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	8q22.3	NR	rs2513877-A	NR	3E-10		0.0198	[0.014-0.026] unit increase	Affymetrix [9000000] (imputed)	N
1377	chr8	103883629	103883630	rs2513877	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	NA	8q22.3	KB-1507C5.2	rs2513877-G	0.8083	4E-9		0.1294	[0.086-0.173] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1377	chr8	103901233	103901234	rs10104995	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	8q22.3	AZIN1, KB-1507C5.2	rs10104995-T	0.230834	4E-13		0.019093003	[0.014-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1377	chr8	103901233	103901234	rs10104995	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	8q22.3	AZIN1, KB-1507C5.2	rs10104995-T	0.230828	8E-11		0.017289838	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1377	chr8	103901233	103901234	rs10104995	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	8q22.3	NR	rs10104995-T	0.230765	3E-22		0.022624	[0.018-0.027] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
1377	chr8	103901907	103901908	rs28594922	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	8q22.3	AZIN1, KB-1507C5.2	rs28594922-G	0.274152	6E-12		0.017426858	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1377	chr8	103901907	103901908	rs28594922	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	8q22.3	AZIN1, KB-1507C5.2	rs28594922-G	0.274078	4E-20		0.023072109	[0.018-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1377	chr8	103908003	103908004	rs13276960	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	8q22.3	NR	rs13276960-G	NR	5E-6		1.0638298	[NR]	Illumina [7158791] (imputed)	N
1377	chr8	103908160	103908161	rs492770	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	8q22.3		rs492770-C	NR	2E-16		0.0165	[0.013-0.02] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1377	chr8	103912413	103912414	rs667927	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	8q22.3	KB-1507C5.2	rs667927-T	0.36558	2E-11		0.015408331	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1377	chr8	103912413	103912414	rs667927	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	8q22.3	KB-1507C5.2	rs667927-T	0.365572	5E-20		0.021049622	[0.017-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1377	chr8	103912413	103912414	rs667927	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	8q22.3	KB-1507C5.2	rs667927-T	0.365561	3E-11		0.015265965	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1377	chr8	103914365	103914366	rs565720	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	8q22.3	AZIN1	rs565720-A	0.7709	3E-8		0.4359	[0.28-0.59] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1377	chr8	103928722	103928722	rs755885030	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	8q22.3	KB-1507C5.2	rs755885030-CA	0.1732	3E-9		0.02862016	[0.019-0.038] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1377	chr8	103928722	103928722	rs755885030	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	8q22.3	KB-1507C5.2	rs755885030-CA	0.1732	1E-9		0.02960042	[0.02-0.039] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1377	chr8	103928939	103928940	rs608236	32386560	Ramirez J	2020-04-29	Am J Hum Genet	Common Genetic Variants Modulate the Electrocardiographic Tpeak-to-Tend Interval.	TPE interval (resting)	71,338 European ancestry individuals	NA	8q22.3	AZIN1	rs608236-A	0.433	9E-6	(men)	0.033	[0.017-0.049] unit increase	Affymetrix [~ 9000000] (imputed)	N
1377	chr8	103928939	103928940	rs608236	32386560	Ramirez J	2020-04-29	Am J Hum Genet	Common Genetic Variants Modulate the Electrocardiographic Tpeak-to-Tend Interval.	TPE interval (resting)	71,338 European ancestry individuals	NA	8q22.3	AZIN1	rs608236-A	0.433	3E-13		0.038	[0.028-0.048] unit increase	Affymetrix [~ 9000000] (imputed)	N
1377	chr8	103928939	103928940	rs608236	32386560	Ramirez J	2020-04-29	Am J Hum Genet	Common Genetic Variants Modulate the Electrocardiographic Tpeak-to-Tend Interval.	TPE interval (resting)	71,338 European ancestry individuals	NA	8q22.3	AZIN1	rs608236-A	0.433	1E-8	(women)	0.041	[0.027-0.055] unit increase	Affymetrix [~ 9000000] (imputed)	N
1377	chr8	103930099	103930100	rs76394756	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	8q22.3		rs76394756-G	NR	2E-8		0.0477	[0.031-0.064] unit increase	Affymetrix, Illumina [20536605] (imputed)	N
1377	chr8	103930099	103930100	rs76394756	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	135,482 East Asian ancestry individuals	NA	8q22.3		rs76394756-G	0.060352	2E-8		0.0477102	[0.031-0.064] unit increase	Illumina [13477028] (imputed)	N
1377	chr8	103930582	103930583	rs2458280	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q22.3	NR	rs2458280-G	0.282275	3E-19				Affymetrix, Illumina [24649327] (imputed)	N
1377	chr8	103930582	103930583	rs2458280	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q22.3	NR	rs2458280-G	0.264948	7E-21				Affymetrix, Illumina [23114412] (imputed)	N
1377	chr8	103932844	103932845	rs1961102	24952745	Arking DE	2014-06-22	Nat Genet	Genetic association study of QT interval highlights role for calcium signaling pathways in myocardial repolarization.	QT interval	Up to 70,389 European ancestry individuals, up to 672 Orcadian individuals	Up to 33,316 European ancestry individuals	8q22.3	AZIN1	rs1961102-T	0.331	3E-9		0.57	[0.37-0.77] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1377	chr8	103940087	103940088	rs529802	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Amygdala volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	8q22.3	NR	rs529802-?		3E-7				Illumina [4322238] (imputed)	N
1378	chr8	103975988	103975989	rs6468852	22881374	Cummings AC	2012-09-01	Ann Hum Genet	Genome-wide association and linkage study in the Amish detects a novel candidate late-onset Alzheimer disease gene.	Alzheimer's disease (late onset)	109 Amish cases, 689 Amish controls	NA	8q22.3	intergenic	rs6468852-G	0.13	1E-6				Affymetrix [614963]	N
1378	chr8	103997960	103997961	rs188710179	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (negative Marder score)	1,390 European ancestry cases	NA	8q22.3		rs188710179-A	NR	7E-6	(GLM)	7.3835	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
1379	chr8	104096255	104096256	rs17201317	29123153	Lee TH	2017-11-09	Sci Rep	A genome-wide association study links small-vessel ischemic stroke to autophagy.	Small vessel stroke	342 Chinese ancestry cases, 1,731 Chinese ancestry control	188 Chinese ancestry cases, 1,265 Chinese ancestry control	8q22.3	ATP6V1C1, BAALCOS	rs17201317-C	0.1095	7E-6		1.521	[1.265-1.829]	Affymetrix [552090] (imputed)	N
1379	chr8	104113148	104113149	rs7825223	32701715	Zhang Y	2020-07-21	J Bone Joint Surg Am	PPARGC1B Is Associated with Nontraumatic Osteonecrosis of the Femoral Head: A Genomewide Association Study on a Chart-Reviewed Cohort.	Nontraumatic osteonecrosis of the femoral head	118 European ancestry cases, 56,811 European ancestry controls	NA	8q22.3	intergenic	rs7825223-A	0.011	5E-7		4.95	[2.66-9.23]	Illumina [3905175] (imputed)	N
1379	chr8	104118565	104118566	rs6983777	23527680	Ebejer JL	2013-04-01	Twin Res Hum Genet	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (combined symptoms)	1,851 individuals	155 individuals	8q22.3	NR	rs6983777-A		8E-6				Illumina [2373249] (imputed)	N
1379	chr8	104129652	104129653	rs185085487	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Growth-regulated protein alpha levels	3,505 Finnish ancestry individuals	NA	8q22.3	NR	rs185085487-C		3E-6		0.4988	[0.29-0.71] SD units decrease	NR [10700000] (imputed)	N
1379	chr8	104147803	104147804	rs56156301	26545240	Giri A	2015-11-06	PLoS One	Genetic Determinants of Pelvic Organ Prolapse among African American and Hispanic Women in the Women's Health Initiative.	Pelvic organ prolapse	793 African American cases, 948 African American controls, 606 Hispanic cases, 305 Hispanic controls	NA	8q22.3	BAALCOS, LINC01181	rs56156301-G	0.9	4E-6		1.6393442		Affymetrix [at least 730985] (imputed)	N
1379	chr8	104171885	104171886	rs6468861	31834638	Gloaguen E	2019-12-13	Ann Hum Genet	General regression model: A "model-free" association test for quantitative traits allowing to test for the underlying genetic model.	Hemoglobin A1c levels	695 individuals	NA	8q22.3	NR	rs6468861-?	0.42	1E-6				Illumina [301183]	N
1379	chr8	104174448	104174449	rs10112046	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia	11,197 European ancestry low myopic cases, 21,416 European ancestry emmetropia controls	NA	8q22.3	NR	rs10112046-?	NR	5E-7		0.0890634	[0.054-0.124] unit increase	NR [13958389] (imputed)	N
1379	chr8	104178576	104178577	rs10955311	34224794	Wang K	2021-07-02	Prog Neuropsychopharmacol Biol Psychiatry	Genome-wide association study identified INSC gene associated with Trail Making Test Part A and Alzheimer's disease related cognitive phenotypes.	Global cognition (Clinical Dementia Rating Scale Sum of Boxes)	684 European ancestry individuals, 17 Hispanic individuals, 36 African American individuals, 18 individuals	NA	8q22.3		rs10955311-C	0.12	9E-8		0.698	[0.44-0.95] unit increase	NR [534934]	N
1379	chr8	104178576	104178577	rs10955311	34224794	Wang K	2021-07-02	Prog Neuropsychopharmacol Biol Psychiatry	Genome-wide association study identified INSC gene associated with Trail Making Test Part A and Alzheimer's disease related cognitive phenotypes.	Cognitive impairment level	684 European ancestry individuals, 17 Hispanic individuals, 36 African American individuals, 18 individuals	NA	8q22.3		rs10955311-C	0.12	5E-6		2.917	[1.68-4.15] unit increase	NR [534934]	N
1379	chr8	104199216	104199217	rs75635567	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		8q22.3	BAALC	rs75635567-T	0.985	5E-6	(liability model)	0.3	[0.16-0.44] unit decrease	NR [19725427] (imputed)	N
1379	chr8	104201400	104201401	rs12548629	29698419	Pande M	2018-04-26	PLoS One	Genetic susceptibility markers for a breast-colorectal cancer phenotype: Exploratory results from genome-wide association studies.	Breast cancer and/or colorectal cancer	589 European ancestry colorectal cancer with a family history of breast cancer cases, 378 European ancestry breast cancer cases with a family history of colorectal cancer cases, 18 European ancestry breast and colorectal cancer cases, 1,769 European ancestry controls	NA	8q22.3	BAALC	rs12548629-?	0.27	3E-7		1.4084507	[1.23-1.72]	Illumina [6220060] (imputed)	N
1380	chr8	104259825	104259826	rs7841861	31806883	de Las Fuentes L	2019-12-06	Pharmacogenomics J	Genome-wide meta-analysis of variant-by-diuretic interactions as modulators of lipid traits in persons of European and African ancestry.	Triglyceride levels x loop diuretics use interaction	2,117 European ancestry exposed individuals, 30,715 European ancestry unexposed individuals, 784 African American and African ancestry exposed individuals, 5,218 African American and African ancestry unexposed individuals	NA	8q22.3	BAALC, FZD6	rs7841861-?	NR	4E-6		0.0103	[0.0099-0.0107] mmol/L increase	Affymetrix, Illumina [NR] (imputed)	N
1380	chr8	104308232	104308233	rs2642365	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	8q22.3	Intergenic	rs2642365-A	0.3086	2E-8	(MTAG)	0.0109	[0.0072-0.0146] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1380	chr8	104308232	104308233	rs2642365	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	8q22.3	Intergenic	rs2642365-C	0.6914	2E-8		0.0119	[0.0078-0.016] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1381	chr8	104349344	104349345	rs544303718	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	8q22.3		rs544303718-C	0.0021447	1E-6		0.3567	[0.21-0.5] unit decrease	Affymetrix [15580782] (imputed)	N
1381	chr8	104352414	104352415	rs559823095	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	8q22.3		rs559823095-A	0.0021447	8E-6		0.32326	[0.18-0.47] unit decrease	Affymetrix [15580782] (imputed)	N
1381	chr8	104364294	104364295	rs827590	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	8q22.3		rs827590-C	NR	3E-10		0.0217	[0.015-0.028] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
1381	chr8	104371446	104371447	rs76070545	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	8q22.3	Intergenic	rs76070545-T	NR	1E-7	(between families)	5.262	unit decrease	Affymetrix [up to 15107142] (imputed)	N
1381	chr8	104402371	104402372	rs117288711	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	8q22.3		rs117288711-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1382	chr8	104557044	104557045	rs151099034	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Smoking x traumatic event in childhood (sexually molested) interaction	127,766 European ancestry individuals	NA	8q22.3		rs151099034-?	NR	3E-8		2.07	[1.34-2.8] unit increase	Affymetrix [NR] (imputed)	N
1382	chr8	104561722	104561723	rs2111490	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	8q22.3	NR	rs2111490-A	NR	2E-8		5.627	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1382	chr8	104561722	104561723	rs2111490	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	8q22.3	NR	rs2111490-?	NR	7E-6		4.503	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1382	chr8	104573788	104573789	rs75686122	23958962	Gelernter J	2013-08-20	Mol Psychiatry	Genome-wide association study of cocaine dependence and related traits: FAM53B identified as a risk gene.	Cocaine dependence	1,809 European ancestry cases, 570 European ancestry controls, 2,482 African American cases, 836 African American controls	4,498 European ancestry individuals, 2,114 African American individuals	8q22.3	RIMS2	rs75686122-?	NR	3E-6	(AA)			Illumina [37426733] (imputed)	N
1383	chr8	104659642	104659643	rs75600780	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Smoking x traumatic event in childhood (sexually molested) interaction	127,766 European ancestry individuals	NA	8q22.3		rs75600780-?	NR	2E-8		2.0832	[1.35-2.82] unit increase	Affymetrix [NR] (imputed)	N
1384	chr8	104824054	104824055	rs118013200	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	8q22.3	RIMS2	rs118013200-C	0.0194268765716783	9E-6	(F_Streptococcaceae_HB)	0.934631	[0.52-1.35] unit decrease	Illumina [7711310] (imputed)	N
1384	chr8	104826891	104826892	rs149185881	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Smoking x traumatic event in childhood (sexually molested) interaction	127,766 European ancestry individuals	NA	8q22.3		rs149185881-?	NR	3E-8		2.0776	[1.35-2.81] unit increase	Affymetrix [NR] (imputed)	N
1386	chr8	105067736	105067737	rs7012546	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	8q22.3		rs7012546-T	0.4166	1E-10		0.0092	[0.0065-0.0119] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1386	chr8	105067736	105067737	rs7012546	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	8q22.3	Intergenic	rs7012546-T	0.4166	8E-9	(MTAG)	0.0077	[0.0052-0.0102] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1386	chr8	105068488	105068489	rs9656789	30737484	Thomsen H	2019-02-08	Leukemia	Genome-wide association study of monoclonal gammopathy of unknown significance (MGUS): comparison with multiple myeloma.	Monoclonal gammopathy of undetermined significance	992 European ancestry cases, 2,910 European ancestry controls	NA	8q22.3	RIMS2	rs9656789-A		3E-6		1.37	[1.19-1.56]	Illumina [10258281] (imputed)	N
1386	chr8	105071111	105071112	rs147672305	29555444	Hamer MA	2018-03-16	J Invest Dermatol	Facial Wrinkles in Europeans: a Genome-Wide Association Study.	Facial wrinkles	3,513 north-western European ancestry individuals	599 north-western European ancestry individuals	8q22.3	NR	rs147672305-A	0.02	9E-7		4.91	[NR] z score increase	Illumina [9009554] (imputed)	N
1386	chr8	105082362	105082363	rs7008904	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	8q22.3	NA	rs7008904-T		4E-9		0.0125747	[0.0084-0.0168] unit increase	Illumina [13288253] (imputed)	N
1387	chr8	105132658	105132659	rs4487720	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	8q22.3	NR	rs4487720-G	0.158052	2E-11		0.06522147	[0.046-0.084] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1387	chr8	105157776	105157777	rs7460257	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	8q22.3	NR	rs7460257-?	NR	5E-6		4.57	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1387	chr8	105159480	105159481	rs374951721	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Skin reflectance (Melanin index)	720 South Asian ancestry individuals		8q22.3	NR	rs374951721-G	NR	4E-7	(conditioned on rs1426654)	0.52564	[0.32-0.73] unit increase	Affymetrix, Illumina [at least 398118] (imputed)	N
1387	chr8	105243121	105243123	rs138440365	30498476	Liu H	2018-11-15	Front Endocrinol (Lausanne)	Heritability and Genome-Wide Association Study of Plasma Cholesterol in Chinese Adult Twins.	High density lipoprotein cholesterol levels	139 Chinese ancestry dizygotic twin pairs	NA	8q22.3	RIMS2	rs138440365-?		2E-6				Illumina [7405822] (imputed)	N
1387	chr8	105249271	105249272	rs182987047	33958783	Liu G	2021-05-06	Nat Genet	Genome-wide survival study identifies a novel synaptic locus and polygenic score for cognitive progression in Parkinson's disease.	Parkinson's disease progression (cognitive)	2,650 European and unknown ancestry individuals	1,171 individuals	8q22.3	RIMS2	rs182987047-T	0.013	3E-11		4.74	[3.01-7.56] (HR)	Illumina [11220132] (imputed)	N
1388	chr8	105359431	105359432	rs2458413	21623375	Albagha OM	2011-05-29	Nat Genet	Genome-wide association identifies three new susceptibility loci for Paget's disease of bone.	Paget's disease	741 European ancestry cases, 2,699 European ancestry controls	1,474 European ancestry cases, 1,671 European ancestry controls	8q22.3	TM7SF4	rs2458413-A	0.58	7E-17		1.4	[1.29-1.51]	Illumina [2487078] (imputed)	N
1389	chr8	105431918	105431919	rs35130488	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	L1-L4 bone mineral density x serum urate levels interaction	2,207 men, 2,354 women	NA		DPYS	rs35130488-?	NR	3E-6	(male)	0.842945	[NR] unit increase	Affymetrix [NR] (imputed)	N
1389	chr8	105459421	105459422	rs150013648	32131869	Arbeeva L	2020-03-04	J Foot Ankle Res	Genome-wide meta-analysis identified novel variant associated with hallux valgus in Caucasians.	Hallux valgus	1,705 European ancestry female cases, 1,945 European ancestry female controls	NA	8q22.3	DPYS	rs150013648-T	0.02	5E-7		3.43	[2.12-5.56]	Affymetrix, Illumina [up to 7729175] (imputed)	N
1389	chr8	105469972	105469973	rs11783979	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Ruminococcus belonging to family Lachnospiraceae)	1,068 Japanese ancestry individuals	NA	8q22.3	DPYS	rs11783979-A	0.42	8E-7	(female)	0.215	[0.13-0.3] unit increase	Illumina [6380737] (imputed)	N
1389	chr8	105470881	105470882	rs80274300	31960908	Nag A	2020-01-21	Hum Mol Genet	Genome-wide scan identifies novel genetic loci regulating salivary metabolite levels.	Salivary metabolite levels	1,419 European ancestry individuals	1,000 European ancestry individuals	8q22.3	DPYS	rs80274300-C	0.81	8E-54	(3-ureidopropionate)	0.764	[0.68-0.85] unit decrease	Illumina [9600000] (imputed)	N
1389	chr8	105478932	105478933	rs2298840	33437055	Panyard DJ	2021-01-12	Commun Biol	Cerebrospinal fluid metabolomics identifies 19 brain-related phenotype associations.	3-ureidopropionate levels	291 European ancestry individuals	NA	8q22.3		rs2298840-A	0.2037	2E-26		0.1967	unit increase	Illumina [7049691] (imputed)	N
1389	chr8	105480179	105480180	rs2959025	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Irritable mood	366,726 European ancestry individuals	NA	8q22.3	DPYS	rs2959025-A	0.348862	4E-8		5.47	z score increase	NR [~ 10847151] (imputed)	N
1390	chr8	105542838	105542839	rs79944793	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 22)	2,187 European ancestry individuals	NA	8q22.3	NR	rs79944793-A	0.01513	3E-6		0.5851	[0.34-0.83] unit increase	Illumina [10677593] (imputed)	N
1390	chr8	105560820	105560821	rs13268287	28566273	Scott RA	2017-05-31	Diabetes	An Expanded Genome-Wide Association Study of Type 2 Diabetes in Europeans.	Type 2 diabetes	up to 26,676 European ancestry cases, up to 132,532 European ancestry controls	up to 12,543 European ancestry cases, up to 66,458 European ancestry controls	8q22.3	NR	rs13268287-A	0.929	1E-6		1.13	[1.08-1.19]	Affymetrix, Illumina [at least 11579618] (imputed)	N
1390	chr8	105617440	105617441	rs80313215	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LRP12	5,368 Icelandic ancestry individuals	NA	8q22.3		rs80313215-A	0.1975	4E-22		0.230774	[0.18-0.28] unit increase	Illumina [7506463] (imputed)	N
1390	chr8	105627116	105627117	rs72679151	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	8q22.3	LRP12	rs72679151-C	0.79640625	3E-12	(LRP12, 7744_10_3)	0.21118248	[0.15-0.27] unit decrease	Illumina [> 1000000] (imputed)	N
1391	chr8	105661925	105661926	rs34340810	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	8q22.3	NR	rs34340810-G	0.9272	4E-10		0.0544	[0.037-0.071] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1391	chr8	105662372	105662373	rs112515915	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	8q22.3	NR	rs112515915-G	0.0691	3E-11		0.0562	[0.04-0.073] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1391	chr8	105696847	105696848	rs4734804	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Irritable mood	366,726 European ancestry individuals	NA	8q22.3	LRP12	rs4734804-A	0.220254	4E-8		5.51	z score increase	NR [~ 10847151] (imputed)	N
1391	chr8	105700679	105700680	rs4734806	24024966	Teumer A	2013-08-14	J Clin Periodontol	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (DPAL)	up to 2,501 European ancestry individuals	NA	8q22.3	LRP12	rs4734806-G	0.16	6E-6	(Age 20-60 years)	0.2075	[0.12-0.30] unit decrease	Affymetrix, Illumina [up to 17585496] (imputed)	N
1392	chr8	105811441	105811442	rs1841319	33597122	Verbitsky M	2021-02-17	J Am Soc Nephrol	Copy Number Variant Analysis and Genome-wide Association Study Identify Loci with Large Effect for Vesicoureteral Reflux.	Vesicoureteral reflux	1,395 European ancestry cases, 5,366 European ancestry controls	NA	8q22.3	NR	rs1841319-A	0.1729	5E-7	(additive)	0.720363	[0.633821442910229-0.818720928367893]	Affymetrix, Illumina [6131010] (imputed)	N
1392	chr8	105841854	105841855	rs1460237	24939585	Fransen E	2014-06-18	Eur J Hum Genet	Genome-wide association analysis demonstrates the highly polygenic character of age-related hearing impairment.	Age-related hearing impairment	1,489 European ancestry individuals	NA	8q22.3	intergenic	rs1460237-?		9E-6	(PC1)	0.452	[NR] unit decrease	Illumina [4167292] (imputed)	N
1392	chr8	105875153	105875154	rs117594363	30718321	Sanchez-Roige S	2019-02-04	J Neurosci	Genome-wide association studies of impulsive personality traits (BIS-11 and UPPSP) and drug experimentation in up to 22,861 adult research participants identify loci in the CACNA1I and CADM2 genes.	Impulsivity (attentional)	21,876 European ancestry individuals	NA	8q22.3	LRP12, ZFPM2	rs117594363-G	0.9911	2E-6		0.239	[0.140-0.338] unit increase	Illumina [11455070] (imputed)	N
1393	chr8	105946874	105946875	rs10098425	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8q22.3	ZFPM2	rs10098425-?	NR	9E-6	(choline)	0.45863575	[0.26-0.66] unit increase	Affymetrix [at least 2500000] (imputed)	N
1393	chr8	105956842	105956843	rs1851292	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	8q22.3	NR	rs1851292-C	0.33162100000000005	3E-9		0.012152	[0.008-0.0163] unit increase	Affymetrix [16583148] (imputed)	N
1393	chr8	105957539	105957540	rs16872085	21658281	Aouizerat BE	2011-06-10	BMC Cardiovasc Disord	GWAS for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease.	Sudden cardiac arrest	88 European ancestry cases, 517 European ancestry controls	NA	8q22.3	ZFPM2	rs16872085-?	0.09	1E-6	(Recessive)	1.83	[1.44-2.33]	Affymetrix [319222]	N
1393	chr8	105958019	105958020	rs284489	22570617	Wiggs JL	2012-04-26	PLoS Genet	Common variants at 9p21 and 8q22 are associated with increased susceptibility to optic nerve degeneration in glaucoma.	Glaucoma (primary open-angle)	3,146 European ancestry cases, 3,487 European ancestry controls	NA	8q22.3	ZFPM2, LRP12	rs284489-?	NR	9E-10	(NPG)	1.61	[1.39-1.89]	Illumina [495132] (imputed)	N
1393	chr8	105958632	105958633	rs284491	26752265	Bailey JN	2016-01-11	Nat Genet	Genome-wide association analysis identifies TXNRD2, ATXN2 and FOXC1 as susceptibility loci for primary open-angle glaucoma.	Glaucoma (low intraocular pressure)	725 European ancestry cases, 11,145 European ancestry controls	363 European ancestry cases	8q22.3		rs284491-T		2E-8		1.52		Affymetrix, Illumina [6425680] (imputed)	N
1393	chr8	105966257	105966258	rs35783704	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls, 49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	8q22.3		rs35783704-A	NR	2E-9		0.0807	[0.054-0.107] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1393	chr8	105966257	105966258	rs35783704	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	8q22.3	RP11-127H5.1	rs35783704-A	0.10075	7E-10		0.022913031	[0.016-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
1393	chr8	105966257	105966258	rs35783704	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	8q22.3	NR	rs35783704-A	0.10107999999999995	3E-20		0.0200758	[0.016-0.024] unit increase	Affymetrix [16578495] (imputed)	N
1393	chr8	105966257	105966258	rs35783704	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	8q22.3	NR	rs35783704-A	0.10147499999999998	5E-16		0.0326591	[0.024-0.041] unit increase	Affymetrix [16585745] (imputed)	N
1393	chr8	105966257	105966258	rs35783704	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	8q22.3		rs35783704-?	NR	1E-14				NR [~ 8900000] (imputed)	N
1393	chr8	105966257	105966258	rs35783704	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Systolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	8q22.3	LRP12, ZFPM2	rs35783704-A	0.109	7E-9		0.414	[0.27-0.56] unit decrease	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
1393	chr8	105966257	105966258	rs35783704	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Systolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	8q22.3	LRP12, ZFPM2	rs35783704-A	0.109	5E-7	(EA, initial)	0.609	[0.37-0.85] unit decrease	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
1393	chr8	105978367	105978368	rs11774829	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	8q22.3	NR	rs11774829-A	0.10126000000000002	6E-32		0.056025	[0.047-0.065] unit increase	Affymetrix [16580851] (imputed)	N
1393	chr8	105978367	105978368	rs11774829	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	8q22.3		rs11774829-?	NR	3E-10				NR [~ 8900000] (imputed)	N
1393	chr8	105978367	105978368	rs11774829	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	8q22.3		rs11774829-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1393	chr8	105978367	105978368	rs11774829	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	8q22.3	intergenic	rs11774829-A	0.0977	1E-19		0.4372	[0.34-0.53] mmHg decrease	Affymetrix [NR] (imputed)	N
1393	chr8	105979255	105979256	rs3134467	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (unassigned genus belonging to family Lachnospiraceae)	1,068 Japanese ancestry individuals	NA	8q22.3	RP11-127H5.1	rs3134467-G	0.28	5E-6		0.0559	[0.032-0.08] unit decrease	Illumina [6380737] (imputed)	N
1393	chr8	105981952	105981953	rs3110291	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	8q22.3		rs3110291-A	0.79809	3E-8		0.025497	[0.016-0.035] unit increase	NR [11722792] (imputed)	N
1393	chr8	105981952	105981953	rs3110291	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls	NA	8q22.3	RP11-127H5.1	rs3110291-C	0.195127	1E-8		0.05901926	[0.039-0.079] unit decrease	Affymetrix [7288503] (imputed)	N
1393	chr8	105982208	105982209	rs13263821	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	8q22.3	RP11-127H5.1	rs13263821-G	0.813088	1E-11		0.0168344	[0.012-0.022] unit increase	Affymetrix [NR] (imputed)	N
1393	chr8	105982215	105982216	rs13263073	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	8q22.3	intergenic	rs13263073-A	0.8133	2E-12		0.1863	[0.13-0.24] mmHg increase	Affymetrix [NR] (imputed)	N
1393	chr8	105982607	105982608	rs13264511	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	8q22.3		rs13264511-T	NR	3E-8		0.0152	[0.0099-0.0205] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
1393	chr8	105992695	105992696	rs977396	20195266	Adkins DE	2010-03-02	Mol Psychiatry	Genomewide pharmacogenomic study of metabolic side effects to antipsychotic drugs.	Response to antipsychotic treatment	421 European ancestry, 214 African American, and 103 cases	NA	8q22.3	intergenic	rs977396-?	0.089	3E-7	(olanzapine-total cholesterol)			Affymetrix [492900]	N
1393	chr8	106024986	106024987	rs16872183	30369944	Balakrishnan P	2018-10-12	Front Genet	Genetic Variants Related to Cardiometabolic Traits Are Associated to B Cell Function, Insulin Resistance, and Diabetes Among AmeriCan Indians: The Strong Heart Family Study.	HOMA-B (corrected for HOMA-IR)	1,892 American Indian ancestry individuals	NA	8q22.3	LRP12, ZFPM2	rs16872183-?	0.26	1E-7		22.62	unit decrease	Illumina [120975] (imputed)	N
1394	chr8	106108302	106108303	rs285815	33568662	Dashti HS	2021-02-10	Nat Commun	Genetic determinants of daytime napping and effects on cardiometabolic health.	Daytime nap	452,633 European ancestry individuals	541,333 European ancestry individuals	8q22.3	ZFPM2, LRP12	rs285815-T		5E-12		0.0059	[0.0041-0.0077] unit increase	Affymetrix [13304133] (imputed)	N
1394	chr8	106108592	106108593	rs1460583	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	8q22.3	RPL29P18	rs1460583-C	NR	2E-7		1.0515248	[1.03-1.07]	Illumina [6627481] (imputed)	N
1394	chr8	106108592	106108593	rs1460583	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	8q22.3	intergenic	rs1460583-C	NR	4E-6		1.0449321	[1.03-1.06]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1394	chr8	106115171	106115172	rs7819593	31097437	Plotnikov D	2019-05-16	Br J Ophthalmol	Association between birth weight and refractive error in adulthood: a Mendelian randomisation study.	Birth weight	188,039 European ancestry individuals	NA	8q23.1	NR	rs7819593-T	0.25	4E-8		0.021	[0.013-0.029] z score decrease	Affymetrix [up to 10400000] (imputed)	N
1394	chr8	106115171	106115172	rs7819593	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	8q23.1	ZFPM2	rs7819593-C	0.242592	6E-13		0.02178	[0.016-0.028] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1394	chr8	106142332	106142333	rs9297357	23453885	Smoller JW	2013-02-27	Lancet	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NA	8q23.1	ZFPM2	rs9297357-T	NR	4E-7	(Modelling analysis)	1.07	[1.04-1.10]	NR [1252901] (imputed)	N
1395	chr8	106186060	106186061	rs529568940	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	8q23.1		rs529568940-C	NR	2E-9		0.0153	[0.01-0.02] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
1395	chr8	106231171	106231172	rs1350723	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	8q23.1		rs1350723-?	NR	4E-12				NR [~ 8900000] (imputed)	N
1395	chr8	106246727	106246728	rs2342776	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	8q23.1	RP11-127H5.1	rs2342776-A	0.40473	2E-11		0.0151289385	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1395	chr8	106248031	106248032	rs2613129	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q23.1	NR	rs2613129-G	0.365112	1E-10				Affymetrix, Illumina [23472807] (imputed)	N
1395	chr8	106259516	106259517	rs2957471	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	8q23.1	RP11-127H5.1	rs2957471-C	0.227293	2E-12		0.018650495	[0.013-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1395	chr8	106260114	106260115	rs12678274	28808816	Xu C	2017-08-14	Biogerontology	A genome-wide association study of cognitive function in Chinese adult twins.	Cognitive function	139 Chinese ancestry dizygotic twin pairs	NA	8q23.1	LOC101927392	rs12678274-?		7E-6				Illumina [1048575]	N
1395	chr8	106263373	106263374	rs2342780	32562552	Chua KC	2020-06-20	Clin Pharmacol Ther	Genome-Wide Meta-Analysis Validates a Roless for S1PR1 in Microtubule Targeting Agent-Induced Sensory Peripheral Neuropathy.	Sensory peripheral neuropathy in microtubule targeting agent-treated breast cancer	1,324 European ancestry individuals	NA	8q23.1	ZFPM2	rs2342780-?		2E-6		0.788	[NR] unit decrease	Illumina [6030476] (imputed)	N
1395	chr8	106265719	106265720	rs2342781	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	8q23.1	intergenic	rs2342781-C	0.4863	2E-7		0.0297	[0.019-0.041] unit decrease	NR [8041861] (imputed)	N
1395	chr8	106287971	106287972	rs2342791	32562552	Chua KC	2020-06-20	Clin Pharmacol Ther	Genome-Wide Meta-Analysis Validates a Roless for S1PR1 in Microtubule Targeting Agent-Induced Sensory Peripheral Neuropathy.	Sensory peripheral neuropathy in microtubule targeting agent-treated breast cancer	1,324 European ancestry individuals	NA	8q23.1	ZFPM2	rs2342791-?		3E-6		0.414	[NR] unit decrease	Illumina [6030476] (imputed)	N
1395	chr8	106289520	106289521	rs3110366	32562552	Chua KC	2020-06-20	Clin Pharmacol Ther	Genome-Wide Meta-Analysis Validates a Roless for S1PR1 in Microtubule Targeting Agent-Induced Sensory Peripheral Neuropathy.	Sensory peripheral neuropathy in microtubule targeting agent-treated breast cancer	1,324 European ancestry individuals	NA	8q23.1	ZFPM2	rs3110366-?		1E-6		0.394	[NR] unit decrease	Illumina [6030476] (imputed)	N
1396	chr8	106313028	106313029	rs2941650	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	8q23.1	NR	rs2941650-G	0.194	6E-6	(IFNalpha_CXCL10_of_CD4p_T)			Illumina [5084123] (imputed)	N
1396	chr8	106338216	106338217	rs1113601	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	8q23.1	ZFPM2	rs1113601-?	NR	2E-6		1.7857143	[NR]	Illumina [up to 547389]	N
1396	chr8	106342781	106342781	rs61051244	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Breast cancer	17,881 European ancestry cases, 410,350 European ancestry controls	NA	8q23.1		rs61051244-CAT	NR	8E-7		1.0680337	NR	Affymetrix [7846216] (imputed)	N
1396	chr8	106345468	106345469	rs17210179	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	8q23.1		rs17210179-?	NR	9E-11				NR [~ 8900000] (imputed)	N
1396	chr8	106347896	106347897	rs72671655	35210625	Barc J	2022-02-24	Nat Genet	Genome-wide association analyses identify new Brugada syndrome risk loci and highlight a new mechanism of sodium channel regulation in disease susceptibility.	Brugada syndrome	2,820 European ancestry cases, 10,001 European ancestry controls	NA	8q23.1	ZFPM2	rs72671655-T	0.95	3E-13		1.85	[1.589 - 2.22]	Affymetrix, Illumina [6990521] (imputed)	N
1396	chr8	106347896	106347897	rs72671655	34274964	Duijvenboden S	2021-07-19	Hum Mol Genet	Genomic and pleiotropic analyses of resting QT interval identifies novel loci and overlap with atrial electrical disorders.	QT interval	24,495 European ancestry men	NA	8q23.1		rs72671655-T	0.96	1E-8		0.088	[0.059-0.117] unit decrease	Affymetrix [NR]	N
1396	chr8	106347896	106347897	rs72671655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q23.1	ZFPM2	rs72671655-T	0.963685	9E-20	(192 ms)	0.13147	[0.1-0.16] unit increase	Affymetrix [10000000] (imputed)	N
1396	chr8	106347896	106347897	rs72671655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q23.1	ZFPM2	rs72671655-T	0.963685	9E-11	(100 ms)	0.0956614	[0.067-0.124] unit increase	Affymetrix [10000000] (imputed)	N
1396	chr8	106347896	106347897	rs72671655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q23.1	ZFPM2	rs72671655-T	0.963685	8E-18	(180 ms)	0.123625	[0.095-0.152] unit increase	Affymetrix [10000000] (imputed)	N
1396	chr8	106347896	106347897	rs72671655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q23.1	ZFPM2	rs72671655-T	0.963685	8E-17	(164 ms)	0.120477	[0.092-0.149] unit increase	Affymetrix [10000000] (imputed)	N
1396	chr8	106347896	106347897	rs72671655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q23.1	ZFPM2	rs72671655-T	0.963685	8E-16	(248 ms)	0.118529	[0.089-0.148] unit increase	Affymetrix [10000000] (imputed)	N
1396	chr8	106347896	106347897	rs72671655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q23.1	ZFPM2	rs72671655-T	0.963685	7E-22	(218 ms)	0.140411	[0.11-0.17] unit increase	Affymetrix [10000000] (imputed)	N
1396	chr8	106347896	106347897	rs72671655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q23.1	ZFPM2	rs72671655-T	0.963685	7E-22	(210 ms)	0.139314	[0.11-0.17] unit increase	Affymetrix [10000000] (imputed)	N
1396	chr8	106347896	106347897	rs72671655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q23.1	ZFPM2	rs72671655-T	0.963685	7E-21	(222 ms)	0.137149	[0.11-0.17] unit increase	Affymetrix [10000000] (imputed)	N
1396	chr8	106347896	106347897	rs72671655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q23.1	ZFPM2	rs72671655-T	0.963685	7E-19	(242 ms)	0.1308	[0.1-0.16] unit increase	Affymetrix [10000000] (imputed)	N
1396	chr8	106347896	106347897	rs72671655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q23.1	ZFPM2	rs72671655-T	0.963685	7E-17	(170 ms)	0.119735	[0.091-0.149] unit increase	Affymetrix [10000000] (imputed)	N
1396	chr8	106347896	106347897	rs72671655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q23.1	ZFPM2	rs72671655-T	0.963685	7E-14	(148 ms)	0.110336	[0.082-0.139] unit increase	Affymetrix [10000000] (imputed)	N
1396	chr8	106347896	106347897	rs72671655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q23.1	ZFPM2	rs72671655-T	0.963685	7E-10	(102 ms)	0.0902469	[0.061-0.119] unit increase	Affymetrix [10000000] (imputed)	N
1396	chr8	106347896	106347897	rs72671655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q23.1	ZFPM2	rs72671655-T	0.963685	6E-18	(190 ms)	0.126828	[0.098-0.156] unit increase	Affymetrix [10000000] (imputed)	N
1396	chr8	106347896	106347897	rs72671655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q23.1	ZFPM2	rs72671655-T	0.963685	6E-15	(156 ms)	0.115028	[0.086-0.144] unit increase	Affymetrix [10000000] (imputed)	N
1396	chr8	106347896	106347897	rs72671655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q23.1	ZFPM2	rs72671655-T	0.963685	6E-12	(136 ms)	0.10048	[0.072-0.129] unit increase	Affymetrix [10000000] (imputed)	N
1396	chr8	106347896	106347897	rs72671655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q23.1	ZFPM2	rs72671655-T	0.963685	6E-12	(116 ms)	0.0993581	[0.071-0.128] unit increase	Affymetrix [10000000] (imputed)	N
1396	chr8	106347896	106347897	rs72671655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q23.1	ZFPM2	rs72671655-T	0.963685	6E-10	(74 ms)	0.0915516	[0.063-0.121] unit increase	Affymetrix [10000000] (imputed)	N
1396	chr8	106347896	106347897	rs72671655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q23.1	ZFPM2	rs72671655-T	0.963685	6E-10	(124 ms)	0.0891618	[0.06-0.118] unit increase	Affymetrix [10000000] (imputed)	N
1396	chr8	106347896	106347897	rs72671655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q23.1	ZFPM2	rs72671655-T	0.963685	5E-9	(88 ms)	0.0858357	[0.057-0.115] unit increase	Affymetrix [10000000] (imputed)	N
1396	chr8	106347896	106347897	rs72671655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q23.1	ZFPM2	rs72671655-T	0.963685	5E-9	(260 ms)	0.0872476	[0.058-0.117] unit increase	Affymetrix [10000000] (imputed)	N
1396	chr8	106347896	106347897	rs72671655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q23.1	ZFPM2	rs72671655-T	0.963685	5E-22	(220 ms)	0.140258	[0.11-0.17] unit increase	Affymetrix [10000000] (imputed)	N
1396	chr8	106347896	106347897	rs72671655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q23.1	ZFPM2	rs72671655-T	0.963685	5E-22	(206 ms)	0.139637	[0.11-0.17] unit increase	Affymetrix [10000000] (imputed)	N
1396	chr8	106347896	106347897	rs72671655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q23.1	ZFPM2	rs72671655-T	0.963685	5E-22	(202 ms)	0.138671	[0.11-0.17] unit increase	Affymetrix [10000000] (imputed)	N
1396	chr8	106347896	106347897	rs72671655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q23.1	ZFPM2	rs72671655-T	0.963685	5E-21	(200 ms)	0.135336	[0.11-0.16] unit increase	Affymetrix [10000000] (imputed)	N
1396	chr8	106347896	106347897	rs72671655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q23.1	ZFPM2	rs72671655-T	0.963685	5E-18	(244 ms)	0.128326	[0.099-0.158] unit increase	Affymetrix [10000000] (imputed)	N
1396	chr8	106347896	106347897	rs72671655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q23.1	ZFPM2	rs72671655-T	0.963685	5E-18	(188 ms)	0.125106	[0.096-0.154] unit increase	Affymetrix [10000000] (imputed)	N
1396	chr8	106347896	106347897	rs72671655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q23.1	ZFPM2	rs72671655-T	0.963685	5E-17	(246 ms)	0.123776	[0.095-0.153] unit increase	Affymetrix [10000000] (imputed)	N
1396	chr8	106347896	106347897	rs72671655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q23.1	ZFPM2	rs72671655-T	0.963685	5E-16	(176 ms)	0.117169	[0.088-0.146] unit increase	Affymetrix [10000000] (imputed)	N
1396	chr8	106347896	106347897	rs72671655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q23.1	ZFPM2	rs72671655-T	0.963685	5E-14	(146 ms)	0.110427	[0.082-0.139] unit increase	Affymetrix [10000000] (imputed)	N
1396	chr8	106347896	106347897	rs72671655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q23.1	ZFPM2	rs72671655-T	0.963685	5E-13	(134 ms)	0.105962	[0.077-0.135] unit increase	Affymetrix [10000000] (imputed)	N
1396	chr8	106347896	106347897	rs72671655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q23.1	ZFPM2	rs72671655-T	0.963685	4E-9	(84 ms)	0.0844363	[0.056-0.113] unit increase	Affymetrix [10000000] (imputed)	N
1396	chr8	106347896	106347897	rs72671655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q23.1	ZFPM2	rs72671655-T	0.963685	4E-9	(110 ms)	0.0854879	[0.057-0.114] unit increase	Affymetrix [10000000] (imputed)	N
1396	chr8	106347896	106347897	rs72671655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q23.1	ZFPM2	rs72671655-T	0.963685	4E-8	(72 ms)	0.081305	[0.052-0.11] unit increase	Affymetrix [10000000] (imputed)	N
1396	chr8	106347896	106347897	rs72671655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q23.1	ZFPM2	rs72671655-T	0.963685	4E-21	(236 ms)	0.137995	[0.11-0.17] unit increase	Affymetrix [10000000] (imputed)	N
1396	chr8	106347896	106347897	rs72671655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q23.1	ZFPM2	rs72671655-T	0.963685	4E-21	(216 ms)	0.137772	[0.11-0.17] unit increase	Affymetrix [10000000] (imputed)	N
1396	chr8	106347896	106347897	rs72671655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q23.1	ZFPM2	rs72671655-T	0.963685	4E-19	(184 ms)	0.1294	[0.1-0.16] unit increase	Affymetrix [10000000] (imputed)	N
1396	chr8	106347896	106347897	rs72671655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q23.1	ZFPM2	rs72671655-T	0.963685	4E-14	(252 ms)	0.112076	[0.083-0.141] unit increase	Affymetrix [10000000] (imputed)	N
1396	chr8	106347896	106347897	rs72671655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q23.1	ZFPM2	rs72671655-T	0.963685	4E-10	(258 ms)	0.0925657	[0.063-0.122] unit increase	Affymetrix [10000000] (imputed)	N
1396	chr8	106347896	106347897	rs72671655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q23.1	ZFPM2	rs72671655-T	0.963685	4E-10	(112 ms)	0.0910599	[0.062-0.12] unit increase	Affymetrix [10000000] (imputed)	N
1396	chr8	106347896	106347897	rs72671655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q23.1	ZFPM2	rs72671655-T	0.963685	3E-9	(58 ms)	0.0880711	[0.059-0.117] unit increase	Affymetrix [10000000] (imputed)	N
1396	chr8	106347896	106347897	rs72671655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q23.1	ZFPM2	rs72671655-T	0.963685	3E-8	(262 ms)	0.0836891	[0.054-0.113] unit increase	Affymetrix [10000000] (imputed)	N
1396	chr8	106347896	106347897	rs72671655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q23.1	ZFPM2	rs72671655-T	0.963685	3E-22	(228 ms)	0.142068	[0.11-0.17] unit increase	Affymetrix [10000000] (imputed)	N
1396	chr8	106347896	106347897	rs72671655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q23.1	ZFPM2	rs72671655-T	0.963685	3E-22	(226 ms)	0.141389	[0.11-0.17] unit increase	Affymetrix [10000000] (imputed)	N
1396	chr8	106347896	106347897	rs72671655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q23.1	ZFPM2	rs72671655-T	0.963685	3E-20	(194 ms)	0.132941	[0.1-0.16] unit increase	Affymetrix [10000000] (imputed)	N
1396	chr8	106347896	106347897	rs72671655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q23.1	ZFPM2	rs72671655-T	0.963685	3E-17	(178 ms)	0.12127	[0.092-0.15] unit increase	Affymetrix [10000000] (imputed)	N
1396	chr8	106347896	106347897	rs72671655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q23.1	ZFPM2	rs72671655-T	0.963685	3E-15	(250 ms)	0.116099	[0.087-0.145] unit increase	Affymetrix [10000000] (imputed)	N
1396	chr8	106347896	106347897	rs72671655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q23.1	ZFPM2	rs72671655-T	0.963685	3E-13	(144 ms)	0.108672	[0.08-0.137] unit increase	Affymetrix [10000000] (imputed)	N
1396	chr8	106347896	106347897	rs72671655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q23.1	ZFPM2	rs72671655-T	0.963685	3E-13	(142 ms)	0.108902	[0.08-0.138] unit increase	Affymetrix [10000000] (imputed)	N
1396	chr8	106347896	106347897	rs72671655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q23.1	ZFPM2	rs72671655-T	0.963685	3E-12	(152 ms)	0.103337	[0.075-0.132] unit increase	Affymetrix [10000000] (imputed)	N
1396	chr8	106347896	106347897	rs72671655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q23.1	ZFPM2	rs72671655-T	0.963685	3E-12	(138 ms)	0.102308	[0.074-0.131] unit increase	Affymetrix [10000000] (imputed)	N
1396	chr8	106347896	106347897	rs72671655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q23.1	ZFPM2	rs72671655-T	0.963685	3E-12	(118 ms)	0.102036	[0.073-0.131] unit increase	Affymetrix [10000000] (imputed)	N
1396	chr8	106347896	106347897	rs72671655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q23.1	ZFPM2	rs72671655-T	0.963685	3E-11	(256 ms)	0.0989551	[0.07-0.128] unit increase	Affymetrix [10000000] (imputed)	N
1396	chr8	106347896	106347897	rs72671655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q23.1	ZFPM2	rs72671655-T	0.963685	3E-11	(126 ms)	0.0962841	[0.068-0.125] unit increase	Affymetrix [10000000] (imputed)	N
1396	chr8	106347896	106347897	rs72671655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q23.1	ZFPM2	rs72671655-T	0.963685	2E-9	(86 ms)	0.086519	[0.058-0.115] unit increase	Affymetrix [10000000] (imputed)	N
1396	chr8	106347896	106347897	rs72671655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q23.1	ZFPM2	rs72671655-T	0.963685	2E-9	(106 ms)	0.0860876	[0.057-0.115] unit increase	Affymetrix [10000000] (imputed)	N
1396	chr8	106347896	106347897	rs72671655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q23.1	ZFPM2	rs72671655-T	0.963685	2E-8	(96 ms)	0.0813579	[0.053-0.11] unit increase	Affymetrix [10000000] (imputed)	N
1396	chr8	106347896	106347897	rs72671655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q23.1	ZFPM2	rs72671655-T	0.963685	2E-8	(90 ms)	0.0835781	[0.055-0.112] unit increase	Affymetrix [10000000] (imputed)	N
1396	chr8	106347896	106347897	rs72671655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q23.1	ZFPM2	rs72671655-T	0.963685	2E-8	(82 ms)	0.0815461	[0.053-0.11] unit increase	Affymetrix [10000000] (imputed)	N
1396	chr8	106347896	106347897	rs72671655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q23.1	ZFPM2	rs72671655-T	0.963685	2E-8	(76 ms)	0.0822134	[0.053-0.111] unit increase	Affymetrix [10000000] (imputed)	N
1396	chr8	106347896	106347897	rs72671655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q23.1	ZFPM2	rs72671655-T	0.963685	2E-8	(60 ms)	0.0830236	[0.054-0.112] unit increase	Affymetrix [10000000] (imputed)	N
1396	chr8	106347896	106347897	rs72671655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q23.1	ZFPM2	rs72671655-T	0.963685	2E-8	(108 ms)	0.0803315	[0.052-0.109] unit increase	Affymetrix [10000000] (imputed)	N
1396	chr8	106347896	106347897	rs72671655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q23.1	ZFPM2	rs72671655-T	0.963685	2E-22	(212 ms)	0.141173	[0.11-0.17] unit increase	Affymetrix [10000000] (imputed)	N
1396	chr8	106347896	106347897	rs72671655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q23.1	ZFPM2	rs72671655-T	0.963685	2E-22	(204 ms)	0.141588	[0.11-0.17] unit increase	Affymetrix [10000000] (imputed)	N
1396	chr8	106347896	106347897	rs72671655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q23.1	ZFPM2	rs72671655-T	0.963685	2E-21	(230 ms)	0.138764	[0.11-0.17] unit increase	Affymetrix [10000000] (imputed)	N
1396	chr8	106347896	106347897	rs72671655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q23.1	ZFPM2	rs72671655-T	0.963685	2E-21	(224 ms)	0.137823	[0.11-0.17] unit increase	Affymetrix [10000000] (imputed)	N
1396	chr8	106347896	106347897	rs72671655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q23.1	ZFPM2	rs72671655-T	0.963685	2E-21	(214 ms)	0.138664	[0.11-0.17] unit increase	Affymetrix [10000000] (imputed)	N
1396	chr8	106347896	106347897	rs72671655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q23.1	ZFPM2	rs72671655-T	0.963685	2E-20	(198 ms)	0.134129	[0.11-0.16] unit increase	Affymetrix [10000000] (imputed)	N
1396	chr8	106347896	106347897	rs72671655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q23.1	ZFPM2	rs72671655-T	0.963685	2E-20	(196 ms)	0.133668	[0.1-0.16] unit increase	Affymetrix [10000000] (imputed)	N
1396	chr8	106347896	106347897	rs72671655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q23.1	ZFPM2	rs72671655-T	0.963685	2E-19	(240 ms)	0.132768	[0.1-0.16] unit increase	Affymetrix [10000000] (imputed)	N
1396	chr8	106347896	106347897	rs72671655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q23.1	ZFPM2	rs72671655-T	0.963685	2E-18	(186 ms)	0.126637	[0.098-0.155] unit increase	Affymetrix [10000000] (imputed)	N
1396	chr8	106347896	106347897	rs72671655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q23.1	ZFPM2	rs72671655-T	0.963685	2E-16	(168 ms)	0.11879	[0.09-0.148] unit increase	Affymetrix [10000000] (imputed)	N
1396	chr8	106347896	106347897	rs72671655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q23.1	ZFPM2	rs72671655-T	0.963685	2E-16	(166 ms)	0.118349	[0.09-0.147] unit increase	Affymetrix [10000000] (imputed)	N
1396	chr8	106347896	106347897	rs72671655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q23.1	ZFPM2	rs72671655-T	0.963685	2E-15	(172 ms)	0.114754	[0.086-0.144] unit increase	Affymetrix [10000000] (imputed)	N
1396	chr8	106347896	106347897	rs72671655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q23.1	ZFPM2	rs72671655-T	0.963685	2E-15	(162 ms)	0.115568	[0.087-0.144] unit increase	Affymetrix [10000000] (imputed)	N
1396	chr8	106347896	106347897	rs72671655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q23.1	ZFPM2	rs72671655-T	0.963685	2E-14	(174 ms)	0.112384	[0.084-0.141] unit increase	Affymetrix [10000000] (imputed)	N
1396	chr8	106347896	106347897	rs72671655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q23.1	ZFPM2	rs72671655-T	0.963685	2E-14	(154 ms)	0.113135	[0.084-0.142] unit increase	Affymetrix [10000000] (imputed)	N
1396	chr8	106347896	106347897	rs72671655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q23.1	ZFPM2	rs72671655-T	0.963685	2E-13	(132 ms)	0.105933	[0.077-0.135] unit increase	Affymetrix [10000000] (imputed)	N
1396	chr8	106347896	106347897	rs72671655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q23.1	ZFPM2	rs72671655-T	0.963685	2E-12	(254 ms)	0.105495	[0.076-0.135] unit increase	Affymetrix [10000000] (imputed)	N
1396	chr8	106347896	106347897	rs72671655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q23.1	ZFPM2	rs72671655-T	0.963685	2E-12	(160 ms)	0.105126	[0.076-0.134] unit increase	Affymetrix [10000000] (imputed)	N
1396	chr8	106347896	106347897	rs72671655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q23.1	ZFPM2	rs72671655-T	0.963685	2E-12	(158 ms)	0.104696	[0.076-0.133] unit increase	Affymetrix [10000000] (imputed)	N
1396	chr8	106347896	106347897	rs72671655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q23.1	ZFPM2	rs72671655-T	0.963685	2E-10	(98 ms)	0.0932857	[0.064-0.122] unit increase	Affymetrix [10000000] (imputed)	N
1396	chr8	106347896	106347897	rs72671655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q23.1	ZFPM2	rs72671655-T	0.963685	2E-10	(104 ms)	0.0921014	[0.063-0.121] unit increase	Affymetrix [10000000] (imputed)	N
1396	chr8	106347896	106347897	rs72671655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q23.1	ZFPM2	rs72671655-T	0.963685	1E-9	(120 ms)	0.0898399	[0.061-0.119] unit increase	Affymetrix [10000000] (imputed)	N
1396	chr8	106347896	106347897	rs72671655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q23.1	ZFPM2	rs72671655-T	0.963685	1E-8	(68 ms)	0.0833299	[0.054-0.112] unit increase	Affymetrix [10000000] (imputed)	N
1396	chr8	106347896	106347897	rs72671655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q23.1	ZFPM2	rs72671655-T	0.963685	1E-8	(66 ms)	0.0842144	[0.055-0.113] unit increase	Affymetrix [10000000] (imputed)	N
1396	chr8	106347896	106347897	rs72671655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q23.1	ZFPM2	rs72671655-T	0.963685	1E-20	(238 ms)	0.136186	[0.11-0.17] unit increase	Affymetrix [10000000] (imputed)	N
1396	chr8	106347896	106347897	rs72671655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q23.1	ZFPM2	rs72671655-T	0.963685	1E-20	(234 ms)	0.137185	[0.11-0.17] unit increase	Affymetrix [10000000] (imputed)	N
1396	chr8	106347896	106347897	rs72671655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q23.1	ZFPM2	rs72671655-T	0.963685	1E-20	(232 ms)	0.136721	[0.11-0.17] unit increase	Affymetrix [10000000] (imputed)	N
1396	chr8	106347896	106347897	rs72671655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q23.1	ZFPM2	rs72671655-T	0.963685	1E-20	(208 ms)	0.136117	[0.11-0.17] unit increase	Affymetrix [10000000] (imputed)	N
1396	chr8	106347896	106347897	rs72671655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q23.1	ZFPM2	rs72671655-T	0.963685	1E-18	(182 ms)	0.127773	[0.099-0.157] unit increase	Affymetrix [10000000] (imputed)	N
1396	chr8	106347896	106347897	rs72671655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q23.1	ZFPM2	rs72671655-T	0.963685	1E-12	(150 ms)	0.1061	[0.077-0.135] unit increase	Affymetrix [10000000] (imputed)	N
1396	chr8	106347896	106347897	rs72671655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q23.1	ZFPM2	rs72671655-T	0.963685	1E-12	(140 ms)	0.104658	[0.076-0.133] unit increase	Affymetrix [10000000] (imputed)	N
1396	chr8	106347896	106347897	rs72671655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q23.1	ZFPM2	rs72671655-T	0.963685	1E-11	(130 ms)	0.0980963	[0.069-0.127] unit increase	Affymetrix [10000000] (imputed)	N
1396	chr8	106347896	106347897	rs72671655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q23.1	ZFPM2	rs72671655-T	0.963685	1E-10	(128 ms)	0.0947485	[0.066-0.123] unit increase	Affymetrix [10000000] (imputed)	N
1396	chr8	106347896	106347897	rs72671655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q23.1	ZFPM2	rs72671655-T	0.963685	1E-10	(114 ms)	0.0941906	[0.065-0.123] unit increase	Affymetrix [10000000] (imputed)	N
1396	chr8	106347896	106347897	rs72671655	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	8q23.1	ZFPM2	rs72671655-T	0.9604	7E-22		1.7306	[1.38-2.08] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1396	chr8	106358619	106358620	rs12546444	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	8q23.1		rs12546444-A	NR	4E-12		1.07	[1.05-1.09]	Affymetrix, Illumina [NR] (imputed)	N
1396	chr8	106358619	106358620	rs12546444	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	8q23.1	ZFPM3	rs12546444-A	0.9	8E-11	(EA)	1.0752687	[1.04-1.1] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
1396	chr8	106379362	106379363	rs34628728	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	8q23.1	ZFPM2, RP11-127H5.1	rs34628728-G	0.304354	1E-11		0.016292967	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1396	chr8	106397115	106397116	rs6999452	26528553	Davenport ER	2015-11-03	PLoS One	Genome-Wide Association Studies of the Human Gut Microbiota.	Gut microbiome composition (summer)	91 Hutterite individuals	NA	8q23.1	NR	rs6999452-?	NR	3E-6	(genus_Bifidobacterium)	0.7132617	[0.41-1.02] unit decrease	Affymetrix [210924]	N
1396	chr8	106406846	106406847	rs988260	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	8q23.1		rs988260-T	NR	2E-8		0.0116	[0.0075-0.0157] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
1397	chr8	106430675	106430676	rs1383592	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	8q23.1	NA	rs1383592-A	0.212	5E-9		0.0122	[0.0081-0.0163] unit increase	NR [~ 27400000] (imputed)	N
1397	chr8	106455557	106455558	rs142507408	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	8q23.1	NR	rs142507408-?	NR	2E-6	(Native Hawaiian)	1.6373	[NR] unit increase	Illumina [up to 11892802] (imputed)	N
1397	chr8	106482104	106482105	rs6983550	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	8q23.1	NR	rs6983550-A	0.642231	3E-12		0.013778	[0.0099-0.0176] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1397	chr8	106497542	106497543	rs4565433	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder	29,475 European ancestry cases, 63,482 European ancestry controls	NA	8q23.1	NR	rs4565433-G	0.159273	2E-6		1.0729614	[1.04-1.1]	Affymetrix [7791636] (imputed)	N
1397	chr8	106509974	106509975	rs2622633	23870195	Wojczynski MK	2013-07-19	BMC Med Genet	Genetics of coronary artery calcification among African Americans, a meta-analysis.	Coronary artery calcification	5,823 African American individuals	9,992 European ancestry individuals	8q23.1	ZFPM2	rs2622633-A	0.21	6E-6	(AA)	0.2	[0.1-0.3] unit increase	Affymetrix, Illumina [up to 2727966] (imputed)	N
1397	chr8	106512480	106512481	rs302953	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	8q23.1	ZFPM2	rs302953-?	NR	8E-11		0.0328723	[0.023-0.043] unit increase	Illumina [4804024] (imputed)	N
1397	chr8	106512827	106512828	rs4734869	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TOM1L1	5,340 Icelandic ancestry individuals	NA	8q23.1		rs4734869-A	0.2287	7E-15		0.159244	[0.12-0.2] unit decrease	Illumina [7506463] (imputed)	N
1397	chr8	106513460	106513461	rs57942103	34356046	Oluwafemi OO	2021-07-01	Genes (Basel)	Genome-Wide Association Studies of Conotruncal Heart Defects with Normally Related Great Vessels in the United States.	Conotruncal heart defects with normally related great vessels	294 European ancestry cases, 2,976 European ancestry controls, 913 cases, 559 controls, 641 trios	NA	8q23.1		rs57942103-?	NR	8E-6				Affymetrix, Illumina [3311160] (imputed)	N
1397	chr8	106513460	106513461	rs57942103	30940143	Zhu Z	2019-04-02	Respir Res	Genetic overlap of chronic obstructive pulmonary disease and cardiovascular disease-related traits: a large-scale genome-wide cross-trait analysis.	Chronic obstructive pulmonary disease or resting heart rate (pleiotropy)	12,550 European and unknown ancestry chronic obstructive pulmonary disease cases, 46,368 European and unknown ancestry controls, 458,969 European ancestry individuals	NA	8q23.1	ZFPM2	rs57942103-?	NR	3E-11				Affymetrix [up to 7325140] (imputed)	N
1397	chr8	106513460	106513461	rs57942103	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	8q23.1	ZFPM2	rs57942103-C	0.247	2E-14	(Advanced glycosylation end product-specific receptor, soluble, AGER.4125.52.2)	0.22	[0.16-0.28] unit increase	Affymetrix [10572788] (imputed)	N
1397	chr8	106516053	106516054	rs12678719	30046033	van Setten J	2018-07-25	Nat Commun	PR interval genome-wide association meta-analysis identifies 50 loci associated with atrial and atrioventricular electrical activity.	PR interval	92,340 European ancestry individuals	NA	8q23.1	ZFPM2	rs12678719-G	0.27	4E-10		0.8	[0.55-1.05] ms increase	Affymetrix, Illumina [2712613] (imputed)	N
1397	chr8	106529301	106529302	rs7837523	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	8q23.1	Intergenic	rs7837523-A	0.2433	3E-10	(MTAG)	0.0131	[0.009-0.0172] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1397	chr8	106529301	106529302	rs7837523	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	8q23.1	Intergenic	rs7837523-A	0.2433	2E-11	(MTAG)	0.0129	[0.0092-0.0166] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1397	chr8	106539687	106539688	rs71522739	33831438	Williams JE	2021-04-05	Genomics	Key genetic variants associated with variation of milk oligosaccharides from diverse human populations.	Human milk oligosaccharide concentration (lacto-N-fucopentaose III) in secretors	305 European, Sub-Saharan African, Hispanic or unknown ancestry individuals	NA	8q23.1		rs71522739-?	NR	2E-10				Illumina [1128286]	N
1397	chr8	106547982	106547983	rs1375961	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	8q23.1	Intergenic	rs1375961-T	0.8836	2E-9		0.0183	[0.012-0.024] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1397	chr8	106554736	106554737	rs4734875	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	8q23.1	ZFPM2	rs4734875-T	0.766476	3E-6		1.04	[1.02-1.06]	NR [8126035] (imputed)	N
1397	chr8	106559718	106559719	rs7008697	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	8q23.1	Intergenic	rs7008697-A	0.42	2E-9	(MTAG)	0.008	[0.0055-0.0105] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1398	chr8	106564651	106564652	rs28416651	34642315	Ferreiro-Iglesias A	2021-10-12	Nat Commun	Germline determinants of humoral immune response to HPV-16 protect against oropharyngeal cancer.	Oropharynx cancer and human papilloma virus 16 negative oropharyngeal cancer	2,359 European ancestry cases, 565 European ancestry controls	NA	8q23.1		rs28416651-A	NR	4E-6		1.174		Illumina [up to 7574753] (imputed)	N
1398	chr8	106564651	106564652	rs28416651	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	8q23.1	ZFPM2	rs28416651-A	0.41	1E-8		0.036	[0.024-0.048] unit decrease	Affymetrix [7947838] (imputed)	N
1398	chr8	106565413	106565414	rs10093110	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	8q23.1	ZFPM2	rs10093110-A	0.4167	2E-8		0.0319	[0.021-0.043] unit decrease	Affymetrix [at least 7947838] (imputed)	N
1398	chr8	106570963	106570964	rs34826779	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Platelet count	27,236 European ancestry individuals	NA	8q23.1		rs34826779-T	0.7079	4E-10		0.0666	[0.046-0.087] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1398	chr8	106570963	106570964	rs34826779	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	8q23.1	ZFPM2	rs34826779-T	0.266931	4E-16		0.020426376	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1398	chr8	106570963	106570964	rs34826779	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Fibrosis-4 index in high alcohol intake	33,324 British ancestry individuals	NA	8q23.1		rs34826779-?	0.2649	1E-9		0.007626	unit increase	NR [6200000] (imputed)	N
1398	chr8	106570963	106570964	rs34826779	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Aspartate aminotransferase platelet ratio index in high alcohol intake	33,330 British ancestry individuals	NA	8q23.1		rs34826779-?	0.2649	2E-7		0.008049	unit increase	NR [6200000] (imputed)	N
1398	chr8	106572269	106572270	rs2343592	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein VEGFA	5,366 Icelandic ancestry individuals	NA	8q23.1		rs2343592-G	0.2127	3E-20		0.216482	[0.17-0.26] unit decrease	Illumina [7506463] (imputed)	N
1398	chr8	106572269	106572270	rs2343592	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	8q23.1		rs2343592-G	NR	8E-19		0.0216	[0.017-0.026] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
1398	chr8	106572269	106572270	rs2343592	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	8q23.1		rs2343592-A	0.733	2E-82				Affymetrix [10369434] (imputed)	N
1398	chr8	106572269	106572270	rs2343592	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	8q23.1	ZFPM2	rs2343592-G	0.267741	4E-13		0.018101303	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1398	chr8	106572269	106572270	rs2343592	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q23.1	NR	rs2343592-G	0.283201	2E-14				Affymetrix, Illumina [23467995] (imputed)	N
1398	chr8	106572269	106572270	rs2343592	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	8q23.1	NR	rs2343592-G	0.268572	5E-16		0.01711	[0.013-0.021] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1398	chr8	106572269	106572270	rs2343592	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Platelet count	108,208 Japanese ancestry individuals	NA	8q23.1	ZFPM2	rs2343592-?	NR	2E-11		0.03023	[0.021-0.039] unit decrease novel	Illumina [6108953] (imputed)	N
1398	chr8	106573524	106573525	rs3832566	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Platelet-derived growth factor subunit B levels	21,758 European ancestry individuals	9,173 individuals	8q23.1		rs3832566-CA	0.75	2E-21		0.1003	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1398	chr8	106573524	106573525	rs3832566	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	8q23.1	ZFPM2	rs3832566-C	0.272777	6E-16		0.020095373	[0.015-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1398	chr8	106573524	106573525	rs3832566	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count (basophil)	171,846 European ancestry individuals	NA	8q23.1	ZFPM2	rs3832566-C	0.2724	2E-9		0.02347503	[0.016-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1398	chr8	106578976	106578977	rs7832219	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q23.1	NR	rs7832219-C	0.293747	4E-12				Affymetrix, Illumina [24332387] (imputed)	N
1398	chr8	106578976	106578977	rs7832219	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	8q23.1		rs7832219-?	NR	3E-17				NR [~ 8900000] (imputed)	N
1398	chr8	106581527	106581528	rs6993770	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Pyruvate levels	114,749 European ancestry individuals	NA	8q23.1		rs6993770-A	0.712106	8E-14		0.0340616	[0.025-0.043] unit increase	NR [11722792] (imputed)	N
1398	chr8	106581527	106581528	rs6993770	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Lactate levels	114,806 European ancestry individuals	NA	8q23.1		rs6993770-A	0.712171	3E-10		0.0288045	[0.02-0.038] unit increase	NR [11722792] (imputed)	N
1398	chr8	106581527	106581528	rs6993770	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein VEGFA	5,366 Icelandic ancestry individuals	NA	8q23.1		rs6993770-T	0.2202	1E-18		0.203571	[0.16-0.25] unit decrease	Illumina [7506463] (imputed)	N
1398	chr8	106581527	106581528	rs6993770	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PDGFD	5,362 Icelandic ancestry individuals	NA	8q23.1		rs6993770-T	0.2202	3E-18		0.1962	[0.15-0.24] unit decrease	Illumina [7506463] (imputed)	N
1398	chr8	106581527	106581528	rs6993770	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HPSE	5,365 Icelandic ancestry individuals	NA	8q23.1		rs6993770-T	0.2202	2E-17		0.196752	[0.15-0.24] unit decrease	Illumina [7506463] (imputed)	N
1398	chr8	106581527	106581528	rs6993770	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein EDAR	5,364 Icelandic ancestry individuals	NA	8q23.1		rs6993770-T	0.2202	6E-24		0.231114	[0.19-0.28] unit increase	Illumina [7506463] (imputed)	N
1398	chr8	106581527	106581528	rs6993770	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DKK4	5,349 Icelandic ancestry individuals	NA	8q23.1		rs6993770-T	0.2202	3E-15		0.176315	[0.13-0.22] unit decrease	Illumina [7506463] (imputed)	N
1398	chr8	106581527	106581528	rs6993770	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DKK1	5,352 Icelandic ancestry individuals	NA	8q23.1		rs6993770-T	0.2202	4E-17		0.188221	[0.14-0.23] unit decrease	Illumina [7506463] (imputed)	N
1398	chr8	106581527	106581528	rs6993770	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CTSA	5,364 Icelandic ancestry individuals	NA	8q23.1		rs6993770-T	0.2202	6E-18		0.195709	[0.15-0.24] unit decrease	Illumina [7506463] (imputed)	N
1398	chr8	106581527	106581528	rs6993770	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CST7	5,368 Icelandic ancestry individuals	NA	8q23.1		rs6993770-T	0.2202	8E-15		0.18174	[0.14-0.23] unit decrease	Illumina [7506463] (imputed)	N
1398	chr8	106581527	106581528	rs6993770	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein COCH	5,367 Icelandic ancestry individuals	NA	8q23.1		rs6993770-T	0.2202	7E-35		0.2814	[0.24-0.33] unit decrease	Illumina [7506463] (imputed)	N
1398	chr8	106581527	106581528	rs6993770	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	8q23.1		rs6993770-T	NR	2E-11		0.0124	[0.0089-0.0159] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
1398	chr8	106581527	106581528	rs6993770	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	8q23.1		rs6993770-T	NR	8E-143		0.052	[0.048-0.056] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1398	chr8	106581527	106581528	rs6993770	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	8q23.1		rs6993770-T	0.382111	3E-15		0.0268653	[0.02-0.034] unit decrease	Illumina [13478928] (imputed)	N
1398	chr8	106581527	106581528	rs6993770	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	8q23.1		rs6993770-T	NR	1E-15		0.0184	[0.014-0.023] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
1398	chr8	106581527	106581528	rs6993770	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	8q23.1		rs6993770-T	NR	1E-9		0.0136	[0.0093-0.0179] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
1398	chr8	106581527	106581528	rs6993770	34553764	Little A	2021-09-06	Hum Mol Genet	Whole genome sequence analysis of platelet traits in the NHLBI trans-omics for precision medicine initiative.	Platelet count	14,392 African American individuals, 13,985 Hispanic or Latin American individuals, 32,129 European ancestry individuals, 681 East Asian ancestry individuals, 13 individuals	10,664 individuals, 10,694 African American individuals, 7,287 Hispanic or Latin American individuals, 7,857 African ancestry individuals	8q23.1		rs6993770-T	0.317247	9E-15		3.1294708	[2.34-3.92] unit decrease	NR [NR]	N
1398	chr8	106581527	106581528	rs6993770	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	8q23.1	NR	rs6993770-T	0.2871	4E-15		0.001879	[0.0014-0.0024] unit decrease	Affymetrix [NR] (imputed)	N
1398	chr8	106581527	106581528	rs6993770	33545615	Hsu LA	2021-01-19	Atherosclerosis	Circulating chemerin levels are determined through circulating platelet counts in nondiabetic Taiwanese people: A bidirectional Mendelian randomization study.	Platelet count	17,037 Han Chinese ancestry individuals	NA	8q23.1	ZFPM2	rs6993770-?	NR	1E-10		3.96	[2.77-5.15] unit decrease (adjusted)	Affymetrix [603527]	N
1398	chr8	106581527	106581528	rs6993770	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Vascular endothelial growth factor levels	21,758 European ancestry individuals	9,173 individuals	8q23.1		rs6993770-A	0.73	4E-36		0.1352	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1398	chr8	106581527	106581528	rs6993770	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Matrix metalloproteinase-1 levels	21,758 European ancestry individuals	9,173 individuals	8q23.1		rs6993770-A	0.73	4E-24		0.1091	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1398	chr8	106581527	106581528	rs6993770	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	8q23.1	ZFPM2	rs6993770-T	0.286354	2E-110		0.055703867	[0.051-0.061] unit decrease	Affymetrix [93095623] (imputed)	N
1398	chr8	106581527	106581528	rs6993770	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	8q23.1	ZFPM2	rs6993770-T	0.286348	5E-122		0.05875265	[0.054-0.064] unit increase	Affymetrix [93095623] (imputed)	N
1398	chr8	106581527	106581528	rs6993770	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	8q23.1	ZFPM2	rs6993770-T	0.286329	2E-169		0.06919311	[0.064-0.074] unit decrease	Affymetrix [93095623] (imputed)	N
1398	chr8	106581527	106581528	rs6993770	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	8q23.1	ZFPM2	rs6993770-T	0.286336	2E-70		0.044243727	[0.039-0.049] unit increase	Affymetrix [93095623] (imputed)	N
1398	chr8	106581527	106581528	rs6993770	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q23.1	NR	rs6993770-T	0.308927	3E-280				Affymetrix, Illumina [24588908] (imputed)	N
1398	chr8	106581527	106581528	rs6993770	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	8q23.1	NR	rs6993770-T	0.286734	9E-254		0.068814	[0.065-0.073] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1398	chr8	106581527	106581528	rs6993770	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q23.1	NR	rs6993770-A	0.709691	8E-111				Affymetrix, Illumina [17210439] (imputed)	N
1398	chr8	106581527	106581528	rs6993770	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	8q23.1	NR	rs6993770-A	0.713684	1E-109		0.047269	[0.043-0.051] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
1398	chr8	106581527	106581528	rs6993770	31679650	Nath AP	2019-10-30	Am J Hum Genet	Multivariate Genome-Wide Association Analysis of a Cytokine Network Reveals Variants with Widespread Immune, Haematological, and Cardiometabolic Pleiotropy.	Cytokine network levels (multivariate analysis)	9,263 Finnish ancestry individuals	NA	8q23.1	ZFPM2	rs6993770-?	NR	5E-8				Illumina [6022229] (imputed)	N
1398	chr8	106581527	106581528	rs6993770	31679650	Nath AP	2019-10-30	Am J Hum Genet	Multivariate Genome-Wide Association Analysis of a Cytokine Network Reveals Variants with Widespread Immune, Haematological, and Cardiometabolic Pleiotropy.	Cytokine levels	9,263 Finnish ancestry individuals	NA	8q23.1	ZFPM2	rs6993770-?	NR	1E-7	(IL12p70)			Illumina [6022229] (imputed)	N
1398	chr8	106581527	106581528	rs6993770	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Platelet count	8,850 African American individuals, 18,949 Hispanic/Latino individuals, 541 Asian ancestry individuals, 603 Native American ancestry individuals, 385 individuals	NA	8q23.1	NR	rs6993770-?	NR	2E-13		3.997506	[2.94-5.06] unit decrease	Illumina [30743395] (imputed)	N
1398	chr8	106581527	106581528	rs6993770	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	8q23.1		rs6993770-?	NR	1E-11				NR [~ 8900000] (imputed)	N
1398	chr8	106581527	106581528	rs6993770	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	8q23.1	ZFPM2	rs6993770-T	0.282	8E-22	(Dickkopf-related protein 1, DKK1.3535.84.1)	0.26	[0.2-0.32] unit decrease	Affymetrix [10572788] (imputed)	N
1398	chr8	106581527	106581528	rs6993770	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	8q23.1	ZFPM2	rs6993770-T	0.282	8E-15	(C-C motif chemokine 17, CCL17.3519.3.2)	0.21	[0.15-0.27] unit decrease	Affymetrix [10572788] (imputed)	N
1398	chr8	106581527	106581528	rs6993770	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	8q23.1	ZFPM2	rs6993770-T	0.282	7E-15	(NAD-dependent protein deacylase sirtuin-5, mitochondrial, SIRT5.12461.8.3)	0.21	[0.15-0.27] unit decrease	Affymetrix [10572788] (imputed)	N
1398	chr8	106581527	106581528	rs6993770	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	8q23.1	ZFPM2	rs6993770-T	0.282	6E-21	(Dickkopf-related protein 4, DKK4.3365.7.2)	0.26	[0.2-0.32] unit decrease	Affymetrix [10572788] (imputed)	N
1398	chr8	106581527	106581528	rs6993770	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	8q23.1	ZFPM2	rs6993770-T	0.282	4E-29	(Cochlin, COCH.7227.75.3)	0.3	[0.24-0.36] unit decrease	Affymetrix [10572788] (imputed)	N
1398	chr8	106581527	106581528	rs6993770	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	8q23.1	ZFPM2	rs6993770-T	0.282	4E-13	(Platelet-derived growth factor subunit B, PDGFB.4149.8.2)	0.2	[0.14-0.26] unit decrease	Affymetrix [10572788] (imputed)	N
1398	chr8	106581527	106581528	rs6993770	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	8q23.1	ZFPM2	rs6993770-T	0.282	4E-12	(Synaptotagmin-11, SYT11.7089.42.3)	0.19	[0.13-0.25] unit decrease	Affymetrix [10572788] (imputed)	N
1398	chr8	106581527	106581528	rs6993770	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	8q23.1	ZFPM2	rs6993770-T	0.282	4E-12	(Neuron-specific protein family member 2, NSG2.13409.9.3)	0.19	[0.13-0.25] unit decrease	Affymetrix [10572788] (imputed)	N
1398	chr8	106581527	106581528	rs6993770	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	8q23.1	ZFPM2	rs6993770-T	0.282	3E-26	(Platelet-derived growth factor D, PDGFD.9341.1.3)	0.29	[0.23-0.35] unit decrease	Affymetrix [10572788] (imputed)	N
1398	chr8	106581527	106581528	rs6993770	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	8q23.1	ZFPM2	rs6993770-T	0.282	3E-18	(Galectin-7, LGALS7.9196.8.3)	0.24	[0.18-0.3] unit decrease	Affymetrix [10572788] (imputed)	N
1398	chr8	106581527	106581528	rs6993770	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	8q23.1	ZFPM2	rs6993770-T	0.282	2E-19	(Endoplasmic reticulum resident protein 44, ERP44.6064.4.3)	0.25	[0.19-0.31] unit decrease	Affymetrix [10572788] (imputed)	N
1398	chr8	106581527	106581528	rs6993770	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	8q23.1	ZFPM2	rs6993770-T	0.282	2E-18	(Amyloid-like protein 2, APLP2.10627.87.3)	0.24	[0.18-0.3] unit decrease	Affymetrix [10572788] (imputed)	N
1398	chr8	106581527	106581528	rs6993770	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	8q23.1	ZFPM2	rs6993770-T	0.282	2E-15	(Platelet-derived growth factor subunit A, PDGFA.4499.21.1)	0.22	[0.16-0.28] unit decrease	Affymetrix [10572788] (imputed)	N
1398	chr8	106581527	106581528	rs6993770	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	8q23.1	ZFPM2	rs6993770-T	0.282	2E-14	(UDP-glucuronosyltransferase 2A1, UGT2A1.8907.11.3)	0.21	[0.15-0.27] unit decrease	Affymetrix [10572788] (imputed)	N
1398	chr8	106581527	106581528	rs6993770	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	8q23.1	ZFPM2	rs6993770-T	0.282	2E-14	(Probable carboxypeptidase X1, CPXM1.6255.74.3)	0.21	[0.15-0.27] unit decrease	Affymetrix [10572788] (imputed)	N
1398	chr8	106581527	106581528	rs6993770	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	8q23.1	ZFPM2	rs6993770-T	0.282	2E-12	(Tumor necrosis factor receptor superfamily member EDAR, EDAR.2977.7.2)	0.19	[0.13-0.25] unit increase	Affymetrix [10572788] (imputed)	N
1398	chr8	106581527	106581528	rs6993770	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	8q23.1	ZFPM2	rs6993770-T	0.282	1E-21	(Lysosomal protective protein, CTSA.3179.51.2)	0.26	[0.2-0.32] unit decrease	Affymetrix [10572788] (imputed)	N
1398	chr8	106581527	106581528	rs6993770	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	8q23.1	ZFPM2	rs6993770-T	0.282	1E-17	(Angiopoietin-1, ANGPT1.2811.27.1)	0.23	[0.17-0.29] unit decrease	Affymetrix [10572788] (imputed)	N
1398	chr8	106581527	106581528	rs6993770	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	8q23.1	ZFPM2	rs6993770-T	0.282	1E-13	(Plasminogen activator inhibitor 1, SERPINE1.2925.9.1)	0.2	[0.14-0.26] unit decrease	Affymetrix [10572788] (imputed)	N
1398	chr8	106581527	106581528	rs6993770	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	8q23.1	ZFPM2	rs6993770-T	0.282	1E-13	(Neutrophil-activating peptide 2, PPBP.2790.54.2)	0.2	[0.14-0.26] unit decrease	Affymetrix [10572788] (imputed)	N
1398	chr8	106581527	106581528	rs6993770	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	8q23.1	ZFPM2	rs6993770-T	0.282	1E-11	(SPARC, SPARC.3043.49.2)	0.19	[0.13-0.25] unit decrease	Affymetrix [10572788] (imputed)	N
1398	chr8	106581527	106581528	rs6993770	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	8q23.1	ZFPM2	rs6993770-T	0.282	1E-11	(DnaJ homolog subfamily B member 11, DNAJB11.7110.2.3)	0.18	[0.12-0.24] unit decrease	Affymetrix [10572788] (imputed)	N
1398	chr8	106581527	106581528	rs6993770	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	8q23.1	ZFPM2	rs6993770-T	0.282	1E-11	(Brain-derived neurotrophic factor, BDNF.2421.7.3)	0.19	[0.13-0.25] unit decrease	Affymetrix [10572788] (imputed)	N
1398	chr8	106581527	106581528	rs6993770	28369058	Folkersen L	2017-04-03	PLoS Genet	Mapping of 79 loci for 83 plasma protein biomarkers in cardiovascular disease.	Blood protein levels in cardiovascular risk	3,394 European ancestry individuals	2,639 individuals	8q23.1	intergenic	rs6993770-T	0.27	7E-14		0.17	unit decrease	Illumina [5270624] (imputed)	N
1398	chr8	106581527	106581528	rs6993770	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-12p70 levels	8,270 Finnish ancestry individuals	NA	8q23.1	NR	rs6993770-T		1E-6		0.0918	[0.055-0.129] SD units decrease	NR [10700000] (imputed)	N
1398	chr8	106581527	106581528	rs6993770	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	8q23.1	ZFPM2	rs6993770-T	0.2854	7E-40		0.05340481	[0.045-0.061] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1398	chr8	106581527	106581528	rs6993770	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	8q23.1	ZFPM2	rs6993770-T	0.2855	2E-52		0.0605383	[0.053-0.068] unit increase	Affymetrix [~ 2500000] (imputed)	N
1398	chr8	106581527	106581528	rs6993770	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	8q23.1	ZFPM2	rs6993770-T	0.2857	1E-67		0.06999471	[0.062-0.078] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1398	chr8	106581527	106581528	rs6993770	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	8q23.1	ZFPM2	rs6993770-T	0.2854	1E-34		0.04908564	[0.041-0.057] unit increase	Affymetrix [~ 2500000] (imputed)	N
1398	chr8	106581527	106581528	rs6993770	26910538	Choi SH	2016-02-24	PLoS Genet	Six Novel Loci Associated with Circulating VEGF Levels Identified by a Meta-analysis of Genome-Wide Association Studies.	Vascular endothelial growth factor levels	9541 European ancestry individuals, 1,115 Cilento (founder/genetic isolated) individuals, 897 Ogliastran (founder/genetic isolated) individuals, 1,759 Val Borbera (founder/genetic isolated) individuals	2,141 European ancestry individuals, 659 Sorbian (founder/genetic isolated) individuals	8q23.1	ZFPM2	rs6993770-A	0.7	4E-55		0.16	[0.14-0.18] unit increase	Affymetrix, Illumina [6705861] (imputed)	N
1398	chr8	106581527	106581528	rs6993770	26805783	Schick UM	2016-01-21	Am J Hum Genet	Genome-wide Association Study of Platelet Count Identifies Ancestry-Specific Loci in Hispanic/Latino Americans.	Platelet count	12,491 Hispanic/Latin American individuals	7,170 Hispanic/Latin American individuals	8q23.1	ZFPM2	rs6993770-A	0.69	3E-8		4.74	[3.07-6.41] unit increase	Illumina [2232944] (imputed)	N
1398	chr8	106581527	106581528	rs6993770	22139419	Gieger C	2011-11-30	Nature	New gene functions in megakaryopoiesis and platelet formation.	Platelet count	38,891 European ancestry individuals, 1,661 Val Borbera (founder/genetic isolate) individuals, 521 Carlantino (founder/genetic isolate) individuals, 1,198 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,213 South Tyrolean (founder/genetic isolate) individuals, 890 Sorbian (founder/genetic isolate) individuals, 4,292 Sardinian (founder/genetic isolate) individuals	Up to 16,949 European ancestry individuals, 854 Cliento (founder/genetic isolate) individuals, 1,035 Talana (founder/genetic isolate) individuals	8q23.1	ZFPM2	rs6993770-A	NR	4E-17		3.668	[2.81-4.52] 10^9/l increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1398	chr8	106581527	106581528	rs6993770	21757650	Debette S	2011-07-14	Circ Res	Identification of cis- and trans-acting genetic variants explaining up to half the variation in circulating vascular endothelial growth factor levels.	Vascular endothelial growth factor levels	3,527 European ancestry individuals	1,727 European ancestry individuals	8q23.1	ZFPM2, LRP12	rs6993770-T	0.32	5E-23				Affymetrix [2540233] (imputed)	N
1398	chr8	106583123	106583124	rs4734879	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein VEGFA	5,364 Icelandic ancestry individuals	NA	8q23.1		rs4734879-G	0.2139	2E-22		0.227367	[0.18-0.27] unit decrease	Illumina [7506463] (imputed)	N
1398	chr8	106583123	106583124	rs4734879	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	8q23.1		rs4734879-G	NR	6E-20		0.0194	[0.015-0.024] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1398	chr8	106583123	106583124	rs4734879	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	8q23.1		rs4734879-G	NR	5E-11		0.0118	[0.0083-0.0153] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
1398	chr8	106583123	106583124	rs4734879	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	8q23.1		rs4734879-A	0.725	1E-24				Affymetrix [10369434] (imputed)	N
1398	chr8	106583123	106583124	rs4734879	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q23.1	NR	rs4734879-G	0.301273	4E-29				Affymetrix, Illumina [24649327] (imputed)	N
1398	chr8	106583123	106583124	rs4734879	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	8q23.1	NR	rs4734879-G	0.276159	1E-26		0.021974	[0.018-0.026] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1398	chr8	106583123	106583124	rs4734879	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q23.1	NR	rs4734879-G	0.293602	8E-24				Affymetrix, Illumina [23114412] (imputed)	N
1398	chr8	106583123	106583124	rs4734879	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	8q23.1	NR	rs4734879-G	0.276452	3E-23		0.02134	[0.017-0.026] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
1398	chr8	106583123	106583124	rs4734879	31676865	Klarin D	2019-11-01	Nat Genet	Genome-wide association analysis of venous thromboembolism identifies new risk loci and genetic overlap with arterial vascular disease.	Venous thromboembolism	23,151 European ancestry cases, 553,439 European ancestry controls, 2,261 African American cases, 49,400 African American controls, 654 Hispanic cases, 21,214 Hispanic controls	17,672 cases, 167,295 controls	8q23.1	ZFPM2	rs4734879-A	0.7114	4E-19		1.0945026	[1.07-1.12]	Affymetrix [up to 34000000] (imputed)	N
1398	chr8	106583123	106583124	rs4734879	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	8q23.1	ZFPM2	rs4734879-G	0.269	7E-30	(Vascular endothelial growth factor A, isoform 121, VEGFA.14032.2.3)	0.31	[0.25-0.37] unit decrease	Affymetrix [10572788] (imputed)	N
1398	chr8	106589246	106589247	rs16873402	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	8q23.1		rs16873402-T	NR	4E-8		0.0096	[0.0063-0.0129] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
1398	chr8	106589246	106589247	rs16873402	28369058	Folkersen L	2017-04-03	PLoS Genet	Mapping of 79 loci for 83 plasma protein biomarkers in cardiovascular disease.	Blood protein levels in cardiovascular risk	3,394 European ancestry individuals	2,639 individuals	8q23.1	intergenic	rs16873402-C	0.71	1E-9		0.15	unit increase	Illumina [5270624] (imputed)	N
1398	chr8	106590683	106590684	rs6987377	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	8q23.1	ZFPM2	rs6987377-A	0.41724	1E-8		0.0111003	[0.0073-0.0149] unit decrease	Affymetrix [NR] (imputed)	N
1398	chr8	106590704	106590705	rs4541868	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CXCL5	5,366 Icelandic ancestry individuals	NA	8q23.1		rs4541868-A	0.2167	1E-23		0.225842	[0.18-0.27] unit increase	Illumina [7506463] (imputed)	N
1398	chr8	106590704	106590705	rs4541868	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Dickkopf-related protein 1 levels	21,758 European ancestry individuals	9,173 individuals	8q23.1		rs4541868-A	0.25	3E-43		0.1376	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1398	chr8	106590704	106590705	rs4541868	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	8q23.1	ZFPM2	rs4541868-A	0.274909	1E-12		0.01774191	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1398	chr8	106590704	106590705	rs4541868	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	145,648 East Asian ancestry individuals	NA	8q23.1	NR	rs4541868-C	0.611753	1E-18		0.033645	[0.026-0.041] SD units increase	Affymetrix, Illumina [16710488] (imputed)	N
1398	chr8	106590704	106590705	rs4541868	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q23.1	NR	rs4541868-A	0.297026	5E-15				Affymetrix, Illumina [19905671] (imputed)	N
1398	chr8	106590704	106590705	rs4541868	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	8q23.1	NR	rs4541868-A	0.275638	3E-16		0.018912	[0.014-0.023] SD unit decrease	Affymetrix, Illumina [50036608] (imputed)	N
1398	chr8	106590704	106590705	rs4541868	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 799 African American cases, 157,769 European ancestry controls, 14,353 African American controls	NA	8q23.1	ZFPM2	rs4541868-C	NR	7E-14		1.0869565	[1.06-1.11]	Affymetrix, Illumina [12923718] (imputed)	N
1398	chr8	106590704	106590705	rs4541868	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 157,769 European ancestry controls	NA	8q23.1	NR	rs4541868-?	NR	2E-13		0.0873	[0.064-0.111] unit decrease	Affymetrix, Illumina [12923718] (imputed)	N
1398	chr8	106590705	106590706	rs4602861	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	CD40 ligand levels	21,758 European ancestry individuals	9,173 individuals	8q23.1		rs4602861-A	0.75	3E-10		0.0699	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1398	chr8	106590705	106590706	rs4602861	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q23.1	NR	rs4602861-G	0.305579	4E-11				Affymetrix, Illumina [24653286] (imputed)	N
1398	chr8	106590705	106590706	rs4602861	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q23.1	NR	rs4602861-G	0.3047	4E-13				Affymetrix, Illumina [24558453] (imputed)	N
1398	chr8	106590705	106590706	rs4602861	28373160	Klarin D	2017-04-01	Circ Cardiovasc Genet	Genetic Analysis of Venous Thromboembolism in UK Biobank Identifies the ZFPM2 Locus and Implicates Obesity as a Causal Risk Factor.	Venous thromboembolism	3,290 European ancestry cases, 116,868 European ancestry controls	65,734 cases and controls (see Germain, 2015)	8q23.1	ZFPM2	rs4602861-A	0.73	5E-10		1.11	[1.07-1.15]	Affymetrix [9155762] (imputed)	N
1398	chr8	106590705	106590706	rs4602861	25772935	Germain M	2015-03-12	Am J Hum Genet	Meta-analysis of 65,734 individuals identifies TSPAN15 and SLC44A2 as two susceptibility loci for venous thromboembolism.	Venous thromboembolism	7,507 European ancestry cases, 52,632 European ancestry controls	3,009 European ancestry cases, 2,586 European ancestry controls	8q23.1	ZFPM2	rs4602861-A	0.766	5E-7		1.2	[1.13-1.27]	Affymetrix, Illumina [6751884] (imputed)	N
1398	chr8	106590850	106590851	rs2343593	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	8q23.1	ZFPM2	rs2343593-T	0.422063	2E-8		0.011293	[0.0073-0.0153] unit decrease	Affymetrix [NR] (imputed)	N
1398	chr8	106592144	106592145	rs16873418	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	8q23.1	ZFPM2	rs16873418-G	0.2998997	2E-11	(EA, Tumor necrosis factor receptor superfamily member EDAR)	0.3148	[0.22-0.41] unit increase	Affymetrix [509946]	N
1398	chr8	106592144	106592145	rs16873418	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	8q23.1	ZFPM2	rs16873418-G	0.2998997	1E-9	(EA, Integrin alpha-I: beta-1 complex)	0.2804	[0.19-0.37] unit increase	Affymetrix [509946]	N
1398	chr8	106593705	106593705	rs147543128	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q23.1	ZFPM2	rs147543128-T	0.838393	4E-8	(-76 ms)	0.0453865	[0.03-0.061] unit increase	Affymetrix [10000000] (imputed)	N
1398	chr8	106613320	106613321	rs17217757	24057671	Chimusa ER	2013-09-18	Hum Mol Genet	Genome-wide association study of ancestry-specific TB risk in the South African Coloured population.	Tuberculosis	642 South African coloured cases, 91 South African coloured controls	NA	8q23.1	ZFPM2	rs17217757-G	0.82	3E-6		2.3256	[NR]	Affymetrix [up to 4467279] (imputed)	N
1398	chr8	106639922	106639923	rs2197131	31097437	Plotnikov D	2019-05-16	Br J Ophthalmol	Association between birth weight and refractive error in adulthood: a Mendelian randomisation study.	Birth weight	188,039 European ancestry individuals	NA	8q23.1	NR	rs2197131-T	0.21	2E-9		0.023	[0.015-0.031] z score decrease	Affymetrix [up to 10400000] (imputed)	N
1398	chr8	106673799	106673800	rs1442330	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	8q23.1	ZFPM2	rs1442330-G	0.429257	1E-13		0.017117022	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1401	chr8	107068213	107068214	rs73700552	28701861	Randall CL	2017-06-15	Pain Res Manag	A Preliminary Genome-Wide Association Study of Pain-Related Fear: Implications for Orofacial Pain.	Fear of minor pain	Up to 1,367 European ancestry individuals, up to 159 African American individuals, up to 13 Hispanic individuals, up to 23 Asian, Native American and other ancestry individuals, up to 21 individuals	NA	8q23.1	NR	rs73700552-C	0.01	1E-7		3.43	unit decrease	Illumina [8591557] (imputed)	N
1402	chr8	107089602	107089603	rs7833595	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Cuneus cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	8q23.1	NR	rs7833595-?		9E-6				Illumina [4322238] (imputed)	N
1402	chr8	107089999	107090000	rs12541635	24665060	Argos M	2014-03-24	J Med Genet	Genome-wide association study of smoking behaviours among Bangladeshi adults.	Age of smoking initiation	1,837 Bangladeshi ancestry males, 198 Bangladeshi ancestry females	NA	8q23.1	NR	rs12541635-?		1E-6				Illumina [1211988] (imputed)	N
1403	chr8	107326838	107326839	rs7013285	29367611	Gao B	2018-01-24	Sci Rep	Genome-wide association study of paclitaxel and carboplatin disposition in women with epithelial ovarian cancer.	Paclitaxel disposition in epithelial ovarian cancer	66 European ancestry cases, 14 Asian ancestry cases	NA	8q23.1	OXR1	rs7013285-?	NR	3E-6	(adjusted for dose, GFR & AST)	3.067	unit increase (EA, Australian cohort)	Illumina [610255]	N
1403	chr8	107335394	107335395	rs149232124	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	8q23.1	OXR1	rs149232124-A	0.999	4E-6	(AA)	9.105	NR unit increase	Illumina [NR] (imputed)	N
1404	chr8	107404657	107404658	rs17252982	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8q23.1	ABRA	rs17252982-?	NR	9E-6	(carnosine)	0.8222595	[0.46-1.19] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1405	chr8	107495603	107495604	rs73309282	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (positive Marder score)	1,390 European ancestry cases	NA	8q23.1		rs73309282-T	NR	3E-6	(GLM)	1.9187	[NR] unit increase	Illumina [~ 9000000] (imputed)	N
1405	chr8	107504116	107504117	rs149128771	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	8q23.1	NR	rs149128771-?	NR	6E-9				Illumina [7760689] (imputed)	N
1405	chr8	107516229	107516230	rs72680930	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 12, vertical position of sublabial sulcus relative to central midface)	2,187 European ancestry individuals	NA	8q23.1	NR	rs72680930-G	0.008253	4E-6		0.7774	[0.45-1.11] unit increase	Illumina [10677593] (imputed)	N
1405	chr8	107524984	107524985	rs2444306	34437536	Akhtari FS	2021-08-26	PLoS Genet	High-throughput screening and genome-wide analyses of 44 anticancer drugs in the 1000 Genomes cell lines reveals an association of the NQO1 gene with the response of multiple anticancer drugs.	Response to erlotinib	680 lymphoblastoid cell lines from Han Chinese ancestry, Japanese ancestry, Kenyan ancestry, Mexican ancestry, Tuscan ancestry, Yoruban ancestry, British ancestry, Columbian ancestry individuals	NA	8q23.1		rs2444306-?	NR	3E-7				Illumina [1510701]	N
1405	chr8	107544079	107544080	rs16892422	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	8q23.1	NR	rs16892422-?	NR	5E-6	(AA)	8.76	[7.35-10.17]	Illumina [905956]	N
1405	chr8	107566311	107566312	rs13264061	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	8q23.1		rs13264061-?	NR	8E-8				NR [~ 8900000] (imputed)	N
1405	chr8	107579391	107579392	rs2851394	27490719	Bacelis J	2016-08-04	PLoS One	Literature-Informed Analysis of a Genome-Wide Association Study of Gestational Age in Norwegian Women and Children Suggests Involvement of Inflammatory Pathways.	Gestational age at birth in labor-initiated deliveries (child effect)	884 Norwegian ancestry children	NA	8q23.1	NR	rs2851394-A		1E-6				NR [525577]	N
1405	chr8	107579391	107579392	rs2851394	27490719	Bacelis J	2016-08-04	PLoS One	Literature-Informed Analysis of a Genome-Wide Association Study of Gestational Age in Norwegian Women and Children Suggests Involvement of Inflammatory Pathways.	Gestational age at birth (child effect)	1,109 Norwegian ancestry children	NA	8q23.1	NR	rs2851394-A		7E-6				NR [525577]	N
1405	chr8	107587927	107587929	rs59737081	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	8q23.1	OXR1, RP11-649G15.2	rs59737081-T	0.615616	8E-10		0.014546992	[0.0099-0.0192] unit increase	Affymetrix [93095623] (imputed)	N
1405	chr8	107587927	107587929	rs59737081	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	8q23.1	OXR1, RP11-649G15.2	rs59737081-T	0.615611	1E-9		0.014453325	[0.0098-0.0191] unit increase	Affymetrix [93095623] (imputed)	N
1405	chr8	107587927	107587929	rs59737081	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	8q23.1	OXR1, RP11-649G15.2	rs59737081-T	0.615592	2E-10		0.015122986	[0.01-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1406	chr8	107641123	107641124	rs3134133	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	8q23.1	NR	rs3134133-G	0.670105	3E-9		0.0125892	[0.0084-0.0168] unit increase	NR [NR]	N
1406	chr8	107673303	107673304	rs1784492	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	8q23.1	NR	rs1784492-G	0.562408	1E-10		0.012504	[0.0087-0.0163] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
1406	chr8	107728570	107728571	rs560316793	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q23.1	NR	rs560316793-T	0.570315	6E-10				Affymetrix, Illumina [23114412] (imputed)	N
1407	chr8	107828077	107828078	rs118061259	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	8q23.1	Intergenic	rs118061259-G	0.997	4E-6	(AA)	0.157	unit increase	Illumina [NR] (imputed)	N
1407	chr8	107836446	107836447	rs2881425	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Intraocular pressure	133,492 European ancestry individuals	NA	8q23.1	ABRA	rs2881425-A	0.68	2E-15				Affymetrix, Illumina [8002429] (imputed)	N
1407	chr8	107840838	107840839	rs72684536	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	8q23.1	OXR1	rs72684536-G	0.676	2E-16		0.112	[0.085-0.139] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1407	chr8	107842293	107842294	rs2930491	26220383	Jang HW	2015-06-02	Epilepsy Res	GWAS identifies two susceptibility loci for lamotrigine-induced skin rash in patients with epilepsy.	Epilepsy and lamotrigine-induced maculopapular eruptions	34 Korean ancestry cases, 1,080 Korean ancestry healthy controls	NA	8q23.1	ABRA	rs2930491-?	0.07	5E-7		4.0	[NR]	Affymetrix [4893794] (imputed)	N
1407	chr8	107844446	107844447	rs2981205	23358156	Benyamin B	2013-01-29	Mol Psychiatry	Childhood intelligence is heritable, highly polygenic and associated with FNBP1L.	Intelligence (childhood)	12,441 European ancestry children	5,548 European ancestry children	8q23.1	NR	rs2981205-T	0.226	5E-6		0.06	[0.035-0.085] unit decrease	Affymetrix, Illumina [138093] (imputed)	N
1407	chr8	107857214	107857215	rs1001989	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Intraocular pressure	101,939 European ancestry cases	NA	8q23.1	NR	rs1001989-T		1E-12		0.11	[0.071-0.149] unit increase	NR [NR]	N
1407	chr8	107857214	107857215	rs1001989	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Intraocular pressure	133,492 European ancestry individuals	NA	8q23.1	ABRA	rs1001989-?	NR	1E-16		0.1068	[0.082-0.132] unit increase	Affymetrix, Illumina [up to 40000000] (imputed)	N
1408	chr8	107909008	107909009	rs4269515	23259602	Wang X	2012-12-21	BMC Oral Health	Genome-wide association scan of dental caries in the permanent dentition.	Dental caries	1,483 European ancestry comparatively younger individuals, 5,960 European ancestry comparatively older individuals	NA	8q23.1	ABRA	rs4269515-?	NR	4E-6				Affymetrix, Illumina [~ 1400000] (imputed)	N
1408	chr8	107964225	107964226	rs1381486	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Intraocular pressure	133,492 European ancestry individuals	NA	8q23.1	ABRA	rs1381486-?	NR	4E-8		0.1491	[0.096-0.202] unit decrease	Affymetrix, Illumina [up to 40000000] (imputed)	N
1408	chr8	107964225	107964226	rs1381486	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	8q23.1	OXR1	rs1381486-T	0.942	2E-9		0.162	[0.11-0.21] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1408	chr8	107998710	107998711	rs147118529	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	8q23.1	NR	rs147118529-?	NR	1E-6		1.1602	[0.61-1.71] unit decrease	Illumina [at least 560000] (imputed)	N
1409	chr8	108040351	108040352	rs7004587	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	8q23.1	intergenic	rs7004587-A	0.0070	3E-6	(HDL )	0.02	[NR] mg/dL increase	Illumina [899892]	N
1409	chr8	108042035	108042036	rs7817662	32314116	Zhang H	2020-04-20	Osteoporos Int	Pleiotropic loci underlying bone mineral density and bone size identified by a bivariate genome-wide association analysis.	Hip bone size	3,267 European ancestry individuals, 1,619 Chinese ancestry individuals, 843 African American individuals, 446 Hispanic individuals	NA	8q23.1	NR	rs7817662-G	NR	4E-8		0.13	[0.091-0.169] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1409	chr8	108042035	108042036	rs7817662	32314116	Zhang H	2020-04-20	Osteoporos Int	Pleiotropic loci underlying bone mineral density and bone size identified by a bivariate genome-wide association analysis.	Bone mineral density (hip) and hip bone size	3,267 European ancestry individuals, 1,619 Chinese ancestry individuals, 843 African American individuals, 446 Hispanic individuals	NA	8q23.1	NR	rs7817662-G	NR	3E-8				Affymetrix, Illumina [NR] (imputed)	N
1409	chr8	108072043	108072044	rs6986153	26629533	Meng W	2015-08-04	EBioMedicine	A Genome-wide Association Study Provides Evidence of Sex-specific Involvement of Chr1p35.1 (ZSCAN20-TLR12P) and Chr8p23.1 (HMGB1P46) With Diabetic Neuropathic Pain.	Neuropathic pain in type 2 diabetes	470 European ancestry male cases, 491 European ancestry female cases, 2,021 European ancestry male controls, 1,239 European ancestry female controls	NA	8q23.1	HMGB1P46	rs6986153-G	0.19	8E-7	(males)	1.67	[1.34-2.08]	Affymetrix, Illumina [6906962] (imputed)	N
1409	chr8	108078855	108078856	rs113528832	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8q23.1	NR	rs113528832-G	0.01045	2E-9	(FGA)	0.4132	NR unit increase	Illumina [1671387] (imputed)	N
1409	chr8	108087627	108087628	rs1461990	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q23.1	ANGPT1	rs1461990-C	0.490663	9E-19	(-30 ms)	0.0492301	[0.038-0.06] unit decrease	Affymetrix [10000000] (imputed)	N
1409	chr8	108087627	108087628	rs1461990	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q23.1	ANGPT1	rs1461990-C	0.490663	7E-17	(-32 ms)	0.046251	[0.035-0.057] unit decrease	Affymetrix [10000000] (imputed)	N
1409	chr8	108087627	108087628	rs1461990	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q23.1	ANGPT1	rs1461990-C	0.490663	3E-13	(-24 ms)	0.0404048	[0.029-0.051] unit decrease	Affymetrix [10000000] (imputed)	N
1409	chr8	108087627	108087628	rs1461990	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q23.1	ANGPT1	rs1461990-C	0.490663	3E-10	(-8 ms)	0.0347867	[0.024-0.046] unit increase	Affymetrix [10000000] (imputed)	N
1409	chr8	108087627	108087628	rs1461990	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q23.1	ANGPT1	rs1461990-C	0.490663	2E-8	(-22 ms)	0.0307105	[0.02-0.042] unit decrease	Affymetrix [10000000] (imputed)	N
1409	chr8	108087627	108087628	rs1461990	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q23.1	ANGPT1	rs1461990-C	0.490663	2E-19	(-28 ms)	0.0495984	[0.039-0.061] unit decrease	Affymetrix [10000000] (imputed)	N
1409	chr8	108087627	108087628	rs1461990	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q23.1	ANGPT1	rs1461990-C	0.490663	2E-17	(-26 ms)	0.0463999	[0.035-0.057] unit decrease	Affymetrix [10000000] (imputed)	N
1410	chr8	108158382	108158383	rs2584363	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Lewy body disease	up to 3,526 individuals	NA	8q23.1	intergenic	rs2584363-T	0.1921	8E-6	(Ordinal I)	0.3098	[0.17-0.45] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1410	chr8	108186562	108186563	rs12546280	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	8q23.1		rs12546280-G	NR	9E-11		0.0174	[0.012-0.023] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
1410	chr8	108186562	108186563	rs12546280	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	8q23.1	HMGB1P46	rs12546280-G	0.160026	2E-15		0.024264336	[0.018-0.03] unit increase	Affymetrix [93095623] (imputed)	N
1410	chr8	108227440	108227442	rs200938589	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Face memory	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	8q23.1	ANGPT1	rs200938589-T	NR	4E-6		0.6956417	[0.4-0.99] unit decrease	Illumina [> 6200000] (imputed)	N
1410	chr8	108239324	108239325	rs1954735	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	8q23.1	NR	rs1954735-C	0.168423	1E-16		0.020807	[0.016-0.026] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
1410	chr8	108251138	108251139	rs2022945	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Intraocular pressure	133,492 European ancestry individuals	NA	8q23.1	ANGPT1	rs2022945-A	0.13	3E-30				Affymetrix, Illumina [8002429] (imputed)	N
1410	chr8	108251138	108251139	rs2022945	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Glaucoma	7,947 British ancestry cases, 119,318 British ancestry controls	NA	8q23.1	ANGPT1	rs2022945-G	0.87	2E-10		1.1904762	NR	Affymetrix [at least 8002429] (imputed)	N
1410	chr8	108251138	108251139	rs2022945	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Intraocular pressure	133,492 European ancestry individuals	NA	8q23.1	ANGPT1	rs2022945-?	NR	1E-28		0.2135	[0.18-0.25] unit decrease	Affymetrix, Illumina [up to 40000000] (imputed)	N
1410	chr8	108251138	108251139	rs2022945	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Glaucoma	11,018 European ancestry cases, 126,068 European ancestry controls	NA	8q23.1	ANGPT1	rs2022945-?	NR	6E-12		1.1830549	[1.13-1.24]	Affymetrix [up to 40000000] (imputed)	N
1410	chr8	108251138	108251139	rs2022945	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	8q23.1	ANGPT1	rs2022945-A	0.127	1E-28		0.213	[0.18-0.25] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1411	chr8	108269078	108269079	rs2154665	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	8,758 European ancestry cases, 108,815 European ancestry controls, 1,996 East Asian ancestry cases, 16,559  East Asian ancestry controls, 171 Sub-Saharan African ancestry cases, 94 Sub-Saharan African ancestry controls	NA	8q23.1	ANGPT1	rs2154665-T	NR	4E-9		0.875728	[0.83-0.92]	Illumina [NR] (imputed)	N
1411	chr8	108270427	108270428	rs2022959	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q23.1	NR	rs2022959-C	0.187732	3E-17				Affymetrix, Illumina [23467995] (imputed)	N
1411	chr8	108273317	108273318	rs2514879	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	23,963 European ancestry cases, 306,942 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	43,254 European ancestry cases, 1,471,118 European ancestry controls	8q23.1	ANGPT1	rs2514879-T	NR	6E-16		0.0926	unit decrease	Illumina [15409056] (imputed)	N
1411	chr8	108274682	108274683	rs2507804	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (antiglaucoma preparations and miotics)	5,215 European ancestry cases, 95,653 European ancestry controls	NA	8q23.1	ANGPT1	rs2507804-T	0.135336	2E-9		0.17396452	[0.12-0.23] unit decrease	Affymetrix [7288503] (imputed)	N
1411	chr8	108275780	108275781	rs2514882	29891935	Choquet H	2018-06-11	Nat Commun	A multiethnic genome-wide association study of primary open-angle glaucoma identifies novel risk loci.	Glaucoma (primary open-angle)	10,523 European ancestry cases, 203,579 European ancestry controls, 411 Hispanic cases, 4,778 Hispanic controls, 463 East Asian ancestry cases, 4,907 East Asian ancestry controls, 298 African American cases, 1,549 African American controls, 204 South Asian ancestry cases, 4,916 South Asian ancestry controls, 272 African British cases, 4,831 African British controls, 144 mixed ancestry cases, 3,427 mixed ancestry controls	NA	8q23.1	ANGPT1	rs2514882-T	NR	7E-12		1.1494253	[1.1-1.19]	Affymetrix [at least 665500] (imputed)	N
1411	chr8	108275856	108275857	rs2514883	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antiglaucoma preparations and miotics)	5,215 European ancestry cases, 95,653 European ancestry controls, 5,911 East Asian ancestry cases, 172,815 East Asian ancestry controls	NA	8q23.1		rs2514883-A	NR	2E-11		0.1118	[0.079-0.144] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1411	chr8	108277129	108277130	rs2514885	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	16,677 European ancestry cases, 199,580 European ancestry controls	7,286 European ancestry cases, 107,362 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	8q23.1	ANGPT1	rs2514885-T	NR	3E-10		1.13655	[1.1-1.18]	Affymetrix, Illumina [14822926] (imputed)	N
1411	chr8	108278615	108278616	rs10505100	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Glaucoma	11,018 European ancestry cases, 126,068 European ancestry controls	NA	8q23.1	ANGPT1	rs10505100-A	NR	5E-12		1.1904762	[1.14-1.23]	Affymetrix [up to 40000000] (imputed)	N
1411	chr8	108281426	108281427	rs6993449	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	8q23.1	NR	rs6993449-C	0.650415290106952	3E-6	(IGP28)	0.1528	[0.088-0.217] unit increase	Illumina [~ 2500000] (imputed)	N
1411	chr8	108283987	108283988	rs34287996	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (high intraocular pressure)	3,376 European ancestry cases, 15,151 European ancestry controls, 1,516 East Asian ancestry cases, 32,649 East Asian ancestry controls, 252 Sub-Saharan African ancestry cases, 197 Sub-Saharan African ancestry controls	NA	8q23.1	ANGPT1	rs34287996-T	NR	7E-11		0.801957	[0.74-0.87]	Illumina [NR] (imputed)	N
1411	chr8	108284909	108284910	rs12542896	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	8q23.1	Intergenic	rs12542896-?	NR	4E-6		1.8201675	[NR]	Affymetrix [492217] (imputed)	N
1411	chr8	108285590	108285591	rs13274594	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Intraocular pressure	101,939 European ancestry cases	NA	8q23.1	NR	rs13274594-A		1E-28		0.24	[0.2-0.28] unit increase	NR [NR]	N
1411	chr8	108286781	108286782	rs10086783	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	8q23.1	ANGPT1	rs10086783-C	0.0885	7E-6		0.0552	[0.031-0.079] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1411	chr8	108288348	108288349	rs10505102	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	8q23.1	ANGPT1	rs10505102-T	0.8651	2E-31		0.2304	[0.19-0.27] unit increase	Affymetrix [~ 11900000] (imputed)	N
1411	chr8	108288751	108288752	rs13270051	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	8q23.1	ANGPT1	rs13270051-C	0.8651	9E-31		0.2274	[0.19-0.27] unit increase	Affymetrix [~ 11900000] (imputed)	N
1411	chr8	108290871	108290872	rs10105844	29235454	Choquet H	2017-12-13	Nat Commun	A large multi-ethnic genome-wide association study identifies novel genetic loci for intraocular pressure.	Intraocular pressure	56,819 European ancestry individuals, 5,748 Hispanic/Latino individuals, 5,119 East Asian ancestry individuals, 2,070 African American individuals	37,930 European and Asian ancestry individuals	8q23.1	ANGPT1	rs10105844-?	NR	2E-10		0.09	[NR] unit decrease	Affymetrix [at least 665000] (imputed)	N
1411	chr8	108293717	108293718	rs66602224	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Intraocular pressure	133,492 European ancestry individuals	NA	8q23.1	ANGPT1	rs66602224-?	NR	1E-13		0.0987	[0.073-0.125] unit increase	Affymetrix, Illumina [up to 40000000] (imputed)	N
1411	chr8	108293717	108293718	rs66602224	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Glaucoma	11,018 European ancestry cases, 126,068 European ancestry controls	NA	8q23.1	ANGPT1	rs66602224-?	NR	8E-6		1.0739033	[1.04095233408353-1.10789741688487]	Affymetrix [up to 40000000] (imputed)	N
1411	chr8	108294079	108294080	rs7829652	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta maximum area	31,908 individuals	NA	8q23.1		rs7829652-T	0.233202	4E-12		0.0603727	[0.043-0.078] increase	Affymetrix [NR]	N
1411	chr8	108314970	108314971	rs4133395	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	9,179 European ancestry cases, 134,471 European ancestry controls, 1,983 East Asian ancestry cases, 13,719 East Asian ancestry controls, 127 Sub-Saharan African ancestry cases, 100 Sub-Saharan African ancestry controls	NA	8q23.1	ANGPT1	rs4133395-T	NR	2E-8		0.904928	[0.87-0.94]	Illumina [NR] (imputed)	N
1411	chr8	108314970	108314971	rs4133395	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Intraocular pressure	101,939 European ancestry cases	NA	8q23.1	NR	rs4133395-G		2E-11		0.1	[0.08-0.12] unit increase	NR [NR]	N
1411	chr8	108314970	108314971	rs4133395	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	8q23.1	ANGPT1	rs4133395-?		3E-8				Affymetrix, Illumina [NR] (imputed)	N
1411	chr8	108317614	108317615	rs11775037	29422769	Shah RL	2018-02-05	Mol Vis	A genome-wide association study of corneal astigmatism: The CREAM Consortium.	Corneal astigmatism	9,293 European ancestry cases, 12,957 European ancestry controls, 4,349 Asian ancestry cases, 4,771 Asian ancestry controls	NA	8q23.1	ANGPT1	rs11775037-A	0.2	7E-6		1.1	[1.05-1.14]	NR [~ 55000000] (imputed)	N
1411	chr8	108334161	108334162	rs141029929	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ANGPT1	5,358 Icelandic ancestry individuals	NA	8q23.1		rs141029929-T	0.01618	2E-14		0.565699	[0.42-0.71] unit increase	Illumina [7506463] (imputed)	N
1411	chr8	108340981	108340982	rs7004172	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	8q23.1	ANGPT1	rs7004172-G	0.624	4E-14		0.1	[0.075-0.125] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1411	chr8	108352158	108352159	rs73701100	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	8q23.1	ANGPT1	rs73701100-C	0.98296875	2E-9	(ANGPT1, 2811_27_1)	0.572855	[0.39-0.76] unit decrease	Illumina [> 1000000] (imputed)	N
1411	chr8	108363595	108363596	rs16876090	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta minimum area	35,110 individuals	NA	8q23.1		rs16876090-G	0.905815	3E-12		0.0782001	[0.055-0.102] decrease	Affymetrix [NR]	N
1411	chr8	108377900	108377901	rs2163870	24315451	van der Valk RJ	2013-12-05	J Allergy Clin Immunol	Fraction of exhaled nitric oxide values in childhood are associated with 17q11.2-q12 and 17q12-q21 variants.	Fractional exhaled nitric oxide (childhood)	5,131 European ancestry individuals, 1,155 Hispanic individuals, 2,572 individuals	NA	8q23.1	ANGPT1	rs2163870-G	0.35	3E-6		0.057	[0.033-0.081] unit increase	Affymetrix, Illumina [2253077] (imputed)	N
1411	chr8	108387424	108387425	rs2916081	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Number of common colds	43,826 European ancestry cases, 15,720 European ancestry controls	NA	8q23.1	NR	rs2916081-?	NR	3E-6		0.0185	[0.011-0.026] unit decrease	Illumina [at least 560000] (imputed)	N
1411	chr8	108393958	108393959	rs1654723	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	8q23.1		rs1654723-A	0.4	6E-51		15.01	z score increase	Affymetrix [9061022] (imputed)	N
1411	chr8	108393958	108393959	rs1654723	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	8q23.1		rs1654723-A	0.4	8E-24		10.06	z score increase	Affymetrix [9061022] (imputed)	N
1411	chr8	108393958	108393959	rs1654723	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	8q23.1		rs1654723-A	0.4	3E-27		10.81	z score increase	Affymetrix [9061022] (imputed)	N
1411	chr8	108393958	108393959	rs1654723	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	8q23.1	NR	rs1654723-A	0.4163	1E-17				NR [9056863] (imputed)	N
1411	chr8	108393958	108393959	rs1654723	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	8q23.1	NR	rs1654723-A	0.4163	1E-17				NR [9056863] (imputed)	N
1411	chr8	108393958	108393959	rs1654723	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	8q23.1	ANGPT1	rs1654723-?		4E-13				NR [7428630] (imputed)	N
1411	chr8	108393958	108393959	rs1654723	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	8q23.1	ANGPT1	rs1654723-G	0.5863	8E-11		0.02346556	[0.016-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1412	chr8	108400660	108400664	rs145224266	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	8q23.1		rs145224266-A	NR	2E-14		0.0184	[0.014-0.023] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
1412	chr8	108400660	108400664	rs145224266	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	8q23.1		rs145224266-A	NR	2E-10		0.0153	[0.011-0.02] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
1412	chr8	108400660	108400664	rs145224266	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	8q23.1	ANGPT1	rs145224266-A	0.586096	5E-15		0.017729087	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1412	chr8	108400660	108400664	rs145224266	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	8q23.1	ANGPT1	rs145224266-A	0.586093	7E-12		0.015560228	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1412	chr8	108400660	108400664	rs145224266	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	8q23.1	ANGPT1	rs145224266-A	0.5874	2E-9		0.02189125	[0.015-0.029] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1412	chr8	108400822	108400823	rs1283706	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	8q23.1		rs1283706-C	NR	2E-8		0.0098	[0.0065-0.0131] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
1412	chr8	108401110	108401111	rs1283705	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q23.1	NR	rs1283705-A	0.531977	1E-11				Affymetrix, Illumina [24332387] (imputed)	N
1412	chr8	108401110	108401111	rs1283705	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	8q23.1	NR	rs1283705-A	0.584955	2E-14		0.014333	[0.011-0.018] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
1412	chr8	108401110	108401111	rs1283705	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	8q23.1	NR	rs1283705-A	0.584994	3E-24		0.018696	[0.015-0.022] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1412	chr8	108401110	108401111	rs1283705	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	8q23.1		rs1283705-?	NR	1E-12				NR [~ 8900000] (imputed)	N
1412	chr8	108402181	108402184	rs780175299	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 2)	19,670 European ancestry individuals	NA	8q23.1		rs780175299-?	NR	2E-13				NR [9705931] (imputed)	N
1412	chr8	108409669	108409669	rs150194324	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	8q23.1	ANGPT1	rs150194324-TTG	0.581802	2E-18		0.020412141	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1412	chr8	108416438	108416439	rs1283687	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Periventricular white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	8q23.1	ANGPT1	rs1283687-A	0.8181	2E-6		0.0353	[0.021-0.05] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1412	chr8	108417004	108417005	rs919823	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q23.1	NR	rs919823-T	0.540262	2E-22				Affymetrix, Illumina [24246363] (imputed)	N
1412	chr8	108417004	108417005	rs919823	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q23.1	NR	rs919823-T	0.536944	3E-11				Affymetrix, Illumina [20825802] (imputed)	N
1412	chr8	108417004	108417005	rs919823	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	8q23.1	NR	rs919823-T	0.586383	2E-13		0.014396	[0.011-0.018] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
1412	chr8	108417400	108417401	rs1283686	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	8q23.1		rs1283686-?	NR	9E-15				NR [~ 8900000] (imputed)	N
1412	chr8	108421947	108421947	rs5893860	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	8q23.1	ANGPT1	rs5893860-CT	0.579453	5E-11		0.014995761	[0.011-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
1412	chr8	108421947	108421947	rs5893860	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	8q23.1	ANGPT1	rs5893860-CT	0.57927	5E-9		0.013190529	[0.0088-0.0176] unit increase	Affymetrix [93095623] (imputed)	N
1412	chr8	108421947	108421947	rs5893860	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	8q23.1	ANGPT1	rs5893860-CT	0.579202	1E-10		0.014837617	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
1412	chr8	108421947	108421947	rs5893860	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	8q23.1	ANGPT1	rs5893860-CT	0.579308	8E-24		0.022772744	[0.018-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1412	chr8	108421947	108421947	rs5893860	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	8q23.1	ANGPT1	rs5893860-CT	0.579427	3E-22		0.022205496	[0.018-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1412	chr8	108421947	108421947	rs5893860	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	8q23.1	ANGPT1	rs5893860-CT	0.579304	3E-16		0.0194737	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1412	chr8	108421947	108421947	rs5893860	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	8q23.1	ANGPT1	rs5893860-CT	0.579295	9E-11		0.0146379275	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
1412	chr8	108433203	108433204	rs1433188	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Subjective well-being	298,420 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	8q23.1	NR	rs1433188-A	0.6028	8E-6		0.013424266	[0.0075-0.0193] unit increase	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
1412	chr8	108434699	108434700	rs4496939	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Intraocular pressure	133,492 European ancestry individuals	NA	8q23.1	ANGPT1	rs4496939-?	NR	2E-17		0.1152	[0.089-0.142] unit decrease	Affymetrix, Illumina [up to 40000000] (imputed)	N
1412	chr8	108434699	108434700	rs4496939	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	8q23.1	ANGPT1	rs4496939-A	0.322	3E-18		0.118	[0.091-0.145] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1412	chr8	108440376	108440377	rs13439823	33745150	de Coo A	2021-03-21	J Clin Periodontol	Genome-wide association study of stage III/IV grade C periodontitis (former aggressive periodontitis) in a Spanish population.	Periodontitis (stage III/IV grade C)	465 Spanish ancestry cases, 1,179 Spanish ancestry controls	NA	8q23.1	ANGPT1	rs13439823-A	0.37	4E-6		2.01	[1.49-2.70]	Affymetrix [645639] (imputed)	N
1412	chr8	108441530	108441531	rs1283696	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Intraocular pressure	133,492 European ancestry individuals	NA	8q23.1	ANGPT1	rs1283696-T	0.91	9E-11				Affymetrix, Illumina [8002429] (imputed)	N
1412	chr8	108456068	108456069	rs144809193	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Intraocular pressure	101,939 European ancestry cases	NA	8q23.1	NR	rs144809193-A		9E-13		0.52	[0.38-0.66] unit increase	NR [NR]	N
1412	chr8	108473293	108473294	rs4734972	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Intraocular pressure	101,939 European ancestry cases	NA	8q23.1	NR	rs4734972-T		1E-15		0.13	[0.091-0.169] unit increase	NR [NR]	N
1412	chr8	108477096	108477097	rs28477973	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8q23.1	NR	rs28477973-A	0.01742	2E-8	(SERPINA1)	2.526	NR unit increase	Illumina [1671387] (imputed)	N
1412	chr8	108477096	108477097	rs28477973	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8q23.1	NR	rs28477973-A	0.01742	1E-8	(LRG1)	0.05171	NR unit increase	Illumina [1671387] (imputed)	N
1412	chr8	108508699	108508700	rs41475846	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta maximum area	31,908 individuals	NA	8q23.1		rs41475846-G	0.850816	4E-9		0.0608363	[0.04-0.081] increase	Affymetrix [NR]	N
1412	chr8	108522423	108522424	rs7003565	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris color (L* coordinate)	329 South Asian ancestry individuals		8q23.1	intergenic	rs7003565-T	0.430288	6E-6		0.367665	[0.21-0.52] unit decrease	Illumina [640625] (imputed)	N
1413	chr8	108537187	108537188	rs10955457	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Blautia)	1,068 Japanese ancestry individuals	NA	8q23.1	intergenic	rs10955457-A	0.48	7E-6		0.0631	[0.036-0.091] unit increase	Illumina [6380737] (imputed)	N
1413	chr8	108630062	108630063	rs180868838	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Intraocular pressure	101,939 European ancestry cases	NA	8q23.1	NR	rs180868838-C		3E-8		0.36	[0.24-0.48] unit increase	NR [NR]	N
1413	chr8	108638644	108638645	rs281749	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1b levels	8,243 Finnish ancestry individuals	NA	8q23.1	NR	rs281749-C	NR	3E-6		0.0799	[0.046-0.113] SD units decrease	NR [10700000] (imputed)	N
1413	chr8	108650187	108650188	rs1494971	28322283	Chibnik LB	2017-03-21	Mol Psychiatry	Susceptibility to neurofibrillary tangles: role of the PTPRD locus and limited pleiotropy with other neuropathologies.	Neurofibrillary tangles	909 European ancestry individuals	369 individuals	8q23.1	NR	rs1494971-T	0.83	7E-6	(EA)	0.15	[0.09-0.22] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1414	chr8	108710645	108710646	rs77557587	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	CTACK levels	3,631 Finnish ancestry individuals	NA	8q23.1	NR	rs77557587-C	NR	9E-6		0.2875	[0.16-0.41] SD units decrease	NR [10700000] (imputed)	N
1414	chr8	108739733	108739734	rs115520750	33979322	Currant H	2021-05-12	PLoS Genet	Genetic variation affects morphological retinal phenotypes extracted from UK Biobank optical coherence tomography images.	Retinal nerve fibre layer thickness or ganglion cell inner plexiform layer thickness (MTAG)	31,434 European ancestry individuals	NA	8q23.1	NR	rs115520750-T	0.01	3E-10		1.12	[0.77-1.47] unit increase	Affymetrix [9231066] (imputed)	N
1414	chr8	108739733	108739734	rs115520750	33979322	Currant H	2021-05-12	PLoS Genet	Genetic variation affects morphological retinal phenotypes extracted from UK Biobank optical coherence tomography images.	Retinal nerve fibre layer (RNFL) thickness	31,434 European ancestry individuals	NA	8q23.1	NR	rs115520750-T	0.01	3E-10		1.12	[0.77-1.47] unit increase	Affymetrix [9231066] (imputed)	N
1415	chr8	108789815	108789816	rs4534106	20171287	Stein JL	2010-02-17	Neuroimage	Voxelwise genome-wide association study (vGWAS).	Brain structure	740 European ancestry individuals	NA	8q23.1	intergenic	rs4534106-?	0.30	1E-6				Illumina [448293]	N
1415	chr8	108805684	108805685	rs76729432	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		8q23.1	NR	rs76729432-C	NR	2E-10		0.0760672	NR unit increase	NR [NR] (imputed)	N
1415	chr8	108818495	108818496	rs145562694	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		8q23.1	ANGPT1	rs145562694-A	NR	9E-16		0.218917	NR unit increase	NR [NR] (imputed)	N
1415	chr8	108868791	108868792	rs112608632	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 19)	2,187 European ancestry individuals	NA	8q23.1	NR	rs112608632-G	0.02523	1E-6		0.4632	[0.28-0.65] unit decrease	Illumina [10677593] (imputed)	N
1415	chr8	108889503	108889504	rs191085112	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Chickenpox	107,769 European ancestry cases, 15,982 European ancestry controls	NA	8q23.1	NR	rs191085112-?	NR	7E-6		0.338	[0.18-0.49] unit decrease	Illumina [at least 560000] (imputed)	N
1415	chr8	108890003	108890004	rs1389976	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	8q23.1		rs1389976-?	NR	7E-15		0.0261421	[0.019-0.033] unit increase	Affymetrix [20259828] (imputed)	N
1415	chr8	108891424	108891425	rs7000755	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Unilateral cleft lip and palate	205 Asian ancestry cases, 315 European ancestry cases, 692 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	8q23.1	NR	rs7000755-?	NR	3E-6		0.58	[0.54-0.62]	Illumina [539000] (imputed)	N
1415	chr8	108910483	108910484	rs10955473	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	8q23.1		rs10955473-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1416	chr8	108923106	108923107	rs73700335	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	8q23.1	NR	rs73700335-G	NR	4E-8		1.054	[1.03-1.07]	Affymetrix, Illumina [29235255] (imputed)	N
1416	chr8	108931015	108931016	rs557606	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	8q23.1		rs557606-A	0.33	2E-16		8.21	z score increase	Affymetrix [9061022] (imputed)	N
1416	chr8	108933529	108933530	rs73700340	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	8q23.1		rs73700340-?	NR	2E-10		0.0443651	[0.031-0.058] unit increase	Affymetrix [20259828] (imputed)	N
1416	chr8	108942259	108942260	rs10505116	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	8q23.1	RSPO2	rs10505116-T	0.89797	6E-14		0.0229777	[0.017-0.029] unit increase	NR [13737936] (imputed)	N
1416	chr8	108943012	108943013	rs668941	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	8q23.1	NR	rs668941-A	0.348137	2E-13		0.0254323	[0.019-0.032] unit increase	NR [19129689] (imputed)	N
1416	chr8	108943012	108943013	rs668941	28031287	Sasayama D	2016-11-26	Hum Mol Genet	Genome-wide quantitative trait loci mapping of the human cerebrospinal fluid proteome.	Cerebrospinal fluid biomarker levels	133 Japanese ancestry individuals.	NA	8q23.1	NR	rs668941-?	NR	5E-9	(R-spondin-2)			Illumina [514227]	N
1416	chr8	108957322	108957323	rs628205	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	8q23.1		rs628205-?	NR	7E-9				NR [~ 8900000] (imputed)	N
1416	chr8	108962626	108962627	rs2047198	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		8q23.1	RSPO2	rs2047198-T	NR	6E-19		0.0574663	NR unit decrease	NR [NR] (imputed)	N
1416	chr8	108966198	108966199	rs7833349	33654129	Jung HU	2021-03-02	Sci Rep	Identification of genetic loci affecting body mass index through interaction with multiple environmental factors using structured linear mixed model.	BMI x  environmental factors (excluding physical activity) interaction	8,155 Korean ancestry individuals	NA	8q23.1	RSPO2	rs7833349-?	NR	4E-6				Affymetrix [5908111] (imputed)	N
1416	chr8	108972297	108972298	rs630662	22076464	Ellinghaus E	2011-11-11	Leukemia	Identification of germline susceptibility loci in ETV6-RUNX1-rearranged childhood acute lymphoblastic leukemia.	Acute lymphoblastic leukemia (childhood)	419 European ancestry ETV6-RUNX1 positive cases, 474 European ancestry controls	951 European ancestry ETV6-RUNX1 positive cases, 326 European ancestry ETV6-RUNX1 negative cases, 3,061 European ancestry controls	8q23.1	RSPO2	rs630662-A	0.29	2E-6	(ETV6-RUNX1 positive, Northern European)			Affymetrix [355750]	N
1416	chr8	108977049	108977050	rs2437004	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	8q23.1		rs2437004-A	0.35	3E-19		8.97	z score increase	Affymetrix [9061022] (imputed)	N
1416	chr8	108977049	108977050	rs2437004	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	8q23.1	NR	rs2437004-A	0.3714	1E-17				NR [9056863] (imputed)	N
1416	chr8	108984289	108984290	rs689411	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (min-P)	26,502 European ancestry individuals	NA	8q23.1	NR	rs689411-?		2E-8				NR [7428630] (imputed)	N
1416	chr8	108991149	108991150	rs74974549	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	8q23.1		rs74974549-?	NR	6E-9		0.0118415	[0.0077-0.016] unit decrease	Affymetrix [20259828] (imputed)	N
1416	chr8	108992157	108992158	rs651858	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	8q23.1	NR	rs651858-C	0.3511	1E-13				NR [9056863] (imputed)	N
1416	chr8	108992157	108992158	rs651858	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	8q23.1	RSPO2	rs651858-?		9E-15				NR [7428630] (imputed)	N
1416	chr8	109015019	109015020	rs13282910	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	8q23.1	NR	rs13282910-?		6E-7	(CRP)	0.123	[NR] unit increase	Illumina [NR]	N
1416	chr8	109016415	109016416	rs139665586	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	8q23.1	RSPO2	rs139665586-A	0.0035	9E-7		0.4887	[0.29-0.68] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1416	chr8	109046547	109046548	rs182973285	29146897	Pirastu N	2017-11-17	Nat Commun	GWAS for male-pattern baldness identifies 71 susceptibility loci explaining 38% of the risk.	Male-pattern baldness	25,662 British ancestry cases, 17,928 British ancestry controls	13,367 European ancestry cases, 11,851 European ancestry controls, 3,436 cases, 2,435 controls	8q23.1	RSPO2	rs182973285-C	NR	1E-16		0.943488	[0.72-1.17] unit increase	Affymetrix [27512692] (imputed)	N
1417	chr8	109060666	109060667	rs2514841	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	8q23.1		rs2514841-T	NR	6E-9		0.0077	[0.0052-0.0102] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1417	chr8	109060666	109060667	rs2514841	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	8q23.1		rs2514841-?	NR	1E-12				NR [~ 8900000] (imputed)	N
1417	chr8	109067612	109067613	rs117954051	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	8q23.1	RSPO2	rs117954051-C	0.01248	1E-13		1.262	NR	Affymetrix [9154080] (imputed)	N
1417	chr8	109068623	109068624	rs7841949	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	8q23.1	NR	rs7841949-T	0.224375	8E-45		0.0550878	[0.047-0.063] unit increase	NR [19129689] (imputed)	N
1417	chr8	109089587	109089588	rs1031402	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Intake of total sugars	174,424 European ancestry individuals	NA	8q23.1	RSPO2	rs1031402-G	0.27	2E-6		0.89	[0.52-1.26] g/day increase	Affymetrix [10353649] (imputed)	N
1417	chr8	109093742	109093743	rs34657911	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		8q23.1	EIF3E, EMC2, RSPO2	rs34657911-A	NR	2E-11		0.0515023	NR unit increase	NR [NR] (imputed)	N
1417	chr8	109096028	109096029	rs374810	25064007	Nakajima M	2014-07-27	Nat Genet	A genome-wide association study identifies susceptibility loci for ossification of the posterior longitudinal ligament of the spine.	Ossification of the posterior longitudinal ligament of the spine	1,112 Japanese ancestry cases, 6,810 Japanese ancestry controls	548 Japanese ancestry cases, 6,469 Japanese ancestry controls	8q23.1	RSPO2, EMC2, EIF3E	rs374810-G	0.611	2E-13		1.34	[1.24-1.44]	Illumina [5163786] (imputed)	N
1417	chr8	109102917	109102918	rs117769774	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		8q23.1	EIF3E	rs117769774-A	NR	5E-17		0.150582	NR unit increase	NR [NR] (imputed)	N
1417	chr8	109106800	109106801	rs392783	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	8q23.1		rs392783-?	NR	2E-23				NR [~ 8900000] (imputed)	N
1417	chr8	109114425	109114426	rs13271359	33979322	Currant H	2021-05-12	PLoS Genet	Genetic variation affects morphological retinal phenotypes extracted from UK Biobank optical coherence tomography images.	Retinal nerve fibre layer thickness or ganglion cell inner plexiform layer thickness (MTAG)	31,434 European ancestry individuals	NA	8q23.1	NR	rs13271359-T	0.26	6E-26		0.44	[0.36-0.52] unit decrease	Affymetrix [9231066] (imputed)	N
1417	chr8	109114425	109114426	rs13271359	33979322	Currant H	2021-05-12	PLoS Genet	Genetic variation affects morphological retinal phenotypes extracted from UK Biobank optical coherence tomography images.	Retinal nerve fibre layer (RNFL) thickness	31,434 European ancestry individuals	NA	8q23.1	NR	rs13271359-T	0.26	6E-26		0.44	[0.36-0.52] unit decrease	Affymetrix [9231066] (imputed)	N
1417	chr8	109114463	109114464	rs617117	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	8q23.1	RSPO2, EIF3E	rs617117-?	NR	2E-9		0.461	[0.3-0.62] unit decrease	Affymetrix [11100000] (imputed)	N
1417	chr8	109141862	109141863	rs376067714	33979322	Currant H	2021-05-12	PLoS Genet	Genetic variation affects morphological retinal phenotypes extracted from UK Biobank optical coherence tomography images.	Retinal nerve fibre layer thickness or ganglion cell inner plexiform layer thickness (MTAG)	31,434 European ancestry individuals	NA	8q23.1	NR	rs376067714-G	0.18	1E-18		0.48	[0.38-0.58] unit decrease	Affymetrix [9231066] (imputed)	N
1417	chr8	109141862	109141863	rs376067714	33979322	Currant H	2021-05-12	PLoS Genet	Genetic variation affects morphological retinal phenotypes extracted from UK Biobank optical coherence tomography images.	Retinal nerve fibre layer (RNFL) thickness	31,434 European ancestry individuals	NA	8q23.1	NR	rs376067714-G	0.18	1E-18		0.48	[0.38-0.58] unit decrease	Affymetrix [9231066] (imputed)	N
1417	chr8	109142306	109142307	rs377057	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	8q23.1	RSPO2	rs377057-?	NR	6E-10		1.0569707	NR	Affymetrix [9154080] (imputed)	N
1417	chr8	109145554	109145555	rs79206101	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	8q23.1		rs79206101-?	NR	2E-62				NR [~ 8900000] (imputed)	N
1417	chr8	109145554	109145555	rs79206101	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	8q23.1	NR	rs79206101-T	0.01088	3E-104		0.327861	[0.3-0.36] unit increase	NR [19129689] (imputed)	N
1417	chr8	109145554	109145555	rs79206101	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		8q23.1	EIF3E, EMC2, RSPO2	rs79206101-T	NR	5E-27		0.306722	NR unit increase	NR [NR] (imputed)	N
1417	chr8	109156531	109156532	rs395815	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Coffee consumption	335,909 European ancestry individuals	39,924 European ancestry individuals	8q23.1	EIF3E	rs395815-C	0.7661	8E-7		0.0086	[0.0053-0.0119] unit increase	Affymetrix [~ 7740000] (imputed)	N
1417	chr8	109157818	109157819	rs640950	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	8q23.1	NR	rs640950-?	NR	1E-6		0.0979944	[0.058-0.138] unit decrease	NR [13958389] (imputed)	N
1417	chr8	109160145	109160146	rs596703	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	8q23.1	NR	rs596703-A	NR	3E-9		0.0143	[0.0096-0.019] unit decrease	Affymetrix [9000000] (imputed)	N
1417	chr8	109167550	109167551	rs10435539	30306274	Shah RL	2018-10-10	Hum Genet	Genome-wide association studies for corneal and refractive astigmatism in UK Biobank demonstrate a shared role for myopia susceptibility loci.	Refractive astigmatism	88,005 European ancestry individuals		8q23.1	AURKBPS1	rs10435539-G	0.795	6E-7		0.018	[0.01-0.026] dioptres increase	NR [5900115] (imputed)	N
1418	chr8	109191837	109191838	rs673854	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	8q23.1	NR	rs673854-A	0.461531	2E-10		0.011576	[0.008-0.0151] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1418	chr8	109228007	109228008	rs611744	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	8q23.1		rs611744-?	NR	9E-16				NR [~ 8900000] (imputed)	N
1418	chr8	109228007	109228008	rs611744	28886342	Ng M	2017-09-07	Am J Hum Genet	A Genome-wide Association Study of Dupuytren Disease Reveals 17 Additional Variants Implicated in Fibrosis.	Dupuytren's disease	3,871 European ancestry cases, 4,686 European ancestry controls	4,041 European and unknown ancestry cases, 8,251 European and unknown ancestry controls	8q23.1	EIF3E, RSPO2	rs611744-?	0.598	1E-32		1.2987013	[1.24-1.36]	Illumina [238825]	N
1418	chr8	109228007	109228008	rs611744	21732829	Dolmans GH	2011-07-06	N Engl J Med	Wnt signaling and Dupuytren's disease.	Dupuytren's disease	856 European ancestry cases, 2,836 European ancestry controls	1,298 European ancestry cases, 7,136 European ancestry controls	8q23.1	RSPO2, EIF3E	rs611744-?	0.6	8E-15		1.33	[1.23-1.43]	Illumina [234939]	N
1418	chr8	109241821	109241822	rs689275	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	8q23.1	RSPO2	rs689275-C	0.58125	2E-7	(RSPO2, 8409_3_3)	0.12460194	[0.078-0.171] unit decrease	Illumina [> 1000000] (imputed)	N
1418	chr8	109268395	109268396	rs77767830	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	8q23.1		rs77767830-?	NR	4E-43				NR [~ 8900000] (imputed)	N
1418	chr8	109268395	109268396	rs77767830	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	8q23.1	NR	rs77767830-T	0.0288483	3E-68		0.164192	[0.15-0.18] unit increase	NR [19129689] (imputed)	N
1418	chr8	109268395	109268396	rs77767830	29146897	Pirastu N	2017-11-17	Nat Commun	GWAS for male-pattern baldness identifies 71 susceptibility loci explaining 38% of the risk.	Male-pattern baldness	25,662 British ancestry cases, 17,928 British ancestry controls	13,367 European ancestry cases, 11,851 European ancestry controls, 3,436 cases, 2,435 controls	8q23.1	RSPO2	rs77767830-A	NR	2E-14		0.311482	[0.23-0.39] unit increase	Affymetrix [27512692] (imputed)	N
1418	chr8	109268395	109268396	rs77767830	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		8q23.1	NR	rs77767830-T	NR	6E-19		0.159832	NR unit increase	NR [NR] (imputed)	N
1418	chr8	109268549	109268550	rs76403858	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 19)	2,187 European ancestry individuals	NA	8q23.1	NR	rs76403858-C	0.01055	5E-6		0.642	[0.37-0.92] unit decrease	Illumina [10677593] (imputed)	N
1418	chr8	109286220	109286221	rs73310513	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Scarlet fever	6,812 European ancestry cases, 113,837 European ancestry controls	NA	8q23.1	NR	rs73310513-?	NR	4E-6		5.5221	[-0.56684-11.61104] unit decrease	Illumina [at least 560000] (imputed)	N
1418	chr8	109288641	109288642	rs74321310	28272467	Heilmann-Heimbach S	2017-03-08	Nat Commun	Meta-analysis identifies novel risk loci and yields systematic insights into the biology of male-pattern baldness.	Male-pattern baldness	10,846 European ancestry cases, 11,672 European ancestry controls	NA	8q23.1		rs74321310-G	0.01	4E-10		0.65	[0.43-0.87] unit increase	Affymetrix, Illumina [8004650] (imputed)	N
1418	chr8	109298793	109298794	rs7815105	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	8q23.1	EIF3E	rs7815105-C	0.390243	2E-12		0.0134433	[0.0097-0.0172] unit increase	NR [13737936] (imputed)	N
1418	chr8	109298793	109298794	rs7815105	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	8q23.1		rs7815105-?	NR	2E-15		0.0161262	[0.012-0.02] unit increase	Affymetrix [20259828] (imputed)	N
1419	chr8	109394187	109394188	rs118013985	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		8q23.1	NR	rs118013985-C	NR	8E-11		0.143139	NR unit increase	NR [NR] (imputed)	N
1419	chr8	109403302	109403303	rs139884897	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 19)	2,187 European ancestry individuals	NA	8q23.1	NR	rs139884897-C	0.01032	2E-6		0.6717	[0.4-0.95] unit decrease	Illumina [10677593] (imputed)	N
1420	chr8	109446827	109446828	rs10089406	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	8q23.1		rs10089406-?	NR	9E-16				NR [~ 8900000] (imputed)	N
1420	chr8	109479736	109479736	rs766047297	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	8q23.1	NR	rs766047297-?	NR	2E-8	(right thalamus proper)			NR [9227495] (imputed)	N
1420	chr8	109495610	109495611	rs79593277	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	8q23.1		rs79593277-?	NR	3E-18				NR [~ 8900000] (imputed)	N
1420	chr8	109495610	109495611	rs79593277	29146897	Pirastu N	2017-11-17	Nat Commun	GWAS for male-pattern baldness identifies 71 susceptibility loci explaining 38% of the risk.	Male-pattern baldness	25,662 British ancestry cases, 17,928 British ancestry controls	13,367 European ancestry cases, 11,851 European ancestry controls, 3,436 cases, 2,435 controls	8q23.1	RSPO2	rs79593277-G	NR	2E-22		0.624511	[0.5-0.75] unit increase	Affymetrix [27512692] (imputed)	N
1420	chr8	109532237	109532238	rs1580347	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	8q23.1	NR	rs1580347-?		2E-8				NR [7428630] (imputed)	N
1420	chr8	109569698	109569699	rs16878149	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8q23.1	NR	rs16878149-T	0.02962	9E-9	(EPHX1)	2.859	NR unit increase	Illumina [1671387] (imputed)	N
1420	chr8	109572559	109572560	rs9297415	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	8q23.1	EIF3E, EMC2	rs9297415-?		2E-10				NR [7428630] (imputed)	N
1420	chr8	109575834	109575835	rs4735071	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	8q23.1		rs4735071-A	0.41	5E-24		10.12	z score increase	Affymetrix [9061022] (imputed)	N
1421	chr8	109597800	109597801	rs79437808	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		8q23.1	NR	rs79437808-T	NR	8E-24		0.27	NR unit increase	NR [NR] (imputed)	N
1421	chr8	109597800	109597801	rs79437808	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Male-pattern baldness	9,009 European ancestry cases, 8,491 European ancestry controls	NA	8q23.1	EMC2, TMEM74	rs79437808-?	NR	4E-13		2.153	[1.738-2.668]	Illumina [13436641] (imputed)	N
1421	chr8	109599968	109599969	rs10089785	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 10)	3,566 European ancestry individuals	4,680 European ancestry individuals	8q23.1		rs10089785-C	0.381164587	3E-8				Illumina [7417619] (imputed)	N
1421	chr8	109629902	109629903	rs2935776	20932310	Han MR	2010-10-08	BMC Neurol	Genome-wide association reveals genetic effects on human A?42 and ? protein levels in cerebrospinal fluids: a case control study.	Cerebrospinal T-tau levels	172 European ancestry Alzheimer's disease cases, 109 European ancestry mild cognitive impairment cases, 109 European ancestry controls	NA	8q23.1	intergenic	rs2935776-C	NR	6E-7	(Controls)			Illumina [498205]	N
1421	chr8	109657429	109657430	rs77096234	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		8q23.1	NR	rs77096234-A	NR	9E-22		0.25867	NR unit increase	NR [NR] (imputed)	N
1421	chr8	109682946	109682947	rs183207557	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		8q23.1	NR	rs183207557-T	NR	9E-21		0.50015	NR unit increase	NR [NR] (imputed)	N
1422	chr8	109725507	109725508	rs1027479	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 6, height of vermillion lower lip)	2,187 European ancestry individuals	NA	8q23.1	NR	rs1027479-C	0.3631	1E-6		0.1526	[0.092-0.213] unit increase	Illumina [10677593] (imputed)	N
1422	chr8	109759253	109759254	rs62509389	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	8q23.1	NR	rs62509389-?	NR	7E-6		16.443	NR unit increase	Affymetrix [at least 600000] (imputed)	N
1422	chr8	109770502	109770503	rs79679798	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in diabetes mellitus	153 Korean ancestry cases, 5,161 Korean ancestry controls	NA	8q23.1		rs79679798-G	0.02579	8E-7		3.246	[2.032-5.187]	Affymetrix [7975321] (imputed)	N
1422	chr8	109774669	109774670	rs62509394	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	8q23.1	NR	rs62509394-?	NR	7E-6		16.443	NR unit increase	Affymetrix [at least 600000] (imputed)	N
1423	chr8	109867235	109867236	rs62510809	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip	15 Asian ancestry cases, 13 European ancestry cases, 15 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	8q23.1	NR	rs62510809-?	NR	2E-6		4.13	[3.1-5.51]	Illumina [539000] (imputed)	N
1423	chr8	109872392	109872393	rs55908337	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		8q23.1	NR	rs55908337-T	NR	1E-15		0.221919	NR unit increase	NR [NR] (imputed)	N
1423	chr8	109886348	109886349	rs76044862	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	8q23.1	RP11-1084E5.1	rs76044862-T	0.9957	5E-6		0.5594	[0.32-0.8] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1424	chr8	109974921	109974922	rs75520281	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		8q23.1	NR	rs75520281-G	NR	2E-14		0.220857	NR unit increase	NR [NR] (imputed)	N
1424	chr8	109991667	109991668	rs4620259	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	8q23.1	TRHR	rs4620259-A	0.809317	5E-8		0.0146254	[0.0094-0.0199] unit decrease	Affymetrix [NR] (imputed)	N
1424	chr8	110007150	110007151	rs7838433	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	8q23.1		rs7838433-T	0.6741	5E-13		0.16876394	[0.12-0.22] mmHg increase	Affymetrix, Illumina [242865] (imputed)	N
1424	chr8	110027346	110027347	rs12543567	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	8q23.1		rs12543567-T	0.51	3E-14		0.11756871	[0.087-0.148] mmHg increase	Affymetrix, Illumina [242866] (imputed)	N
1424	chr8	110042171	110042172	rs7818891	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	8q23.1		rs7818891-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1424	chr8	110070485	110070486	rs34080186	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Daytime sleep phenotypes	874 European ancestry individuals	NA	8q23.1	RP11-1084E5.1, TRHR, NUDCD1	rs34080186-C	NR	2E-6	(daytime resting duration)	0.09104	[0.053-0.129] unit increase	Affymetrix [7141204] (imputed)	N
1424	chr8	110085817	110085818	rs4506180	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8q23.1	NUDCD1	rs4506180-?	NR	3E-6	(PC 38:2)	0.15584105	[0.091-0.221] unit increase	Affymetrix [at least 2500000] (imputed)	N
1424	chr8	110091010	110091011	rs3110054	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	8q23.1		rs3110054-?	NR	6E-8				NR [~ 8900000] (imputed)	N
1424	chr8	110092600	110092601	rs3110057	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	8q23.1		rs3110057-A	NR	1E-9		0.0116	[0.0079-0.0153] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1424	chr8	110092600	110092601	rs3110057	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	8q23.1		rs3110057-A	NR	7E-12		0.0126	[0.0091-0.0161] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
1424	chr8	110098631	110098632	rs5772	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	8q23.1	intergenic	rs5772-C	0.596	8E-10		0.1188	[0.081-0.157] mmHg decrease	Affymetrix [NR] (imputed)	N
1425	chr8	110107160	110107161	rs28499085	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	8q23.1	TRHR	rs28499085-A	0.7276	3E-13		0.143	[0.1-0.18] unit increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1425	chr8	110107824	110107825	rs12544197	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	8q23.1		rs12544197-A	NR	3E-14		0.0123	[0.0092-0.0154] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
1425	chr8	110107824	110107825	rs12544197	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	8q23.1		rs12544197-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1425	chr8	110115675	110115676	rs7832552	19268274	Liu XG	2009-03-04	Am J Hum Genet	Genome-wide association and replication studies identified TRHR as an important gene for lean body mass.	Body mass (lean)	973 European ancestry individuals	1,488 European ancestry individuals,  1,972 European ancestry individuals from 593 families, 2,955 Chinese ancestry individuals	8q23.1	TRHR	rs7832552-T	0.32	4E-10		0.1	[0.04-0.16] kg increase	Affymetrix [379319]	N
1425	chr8	110123182	110123183	rs12680028	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	8q23.1	TRHR	rs12680028-C	0.5342	3E-8		1.04	[1.02-1.05]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1425	chr8	110140563	110140564	rs4734193	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	8q23.1	NR	rs4734193-C	0.5318	4E-8		0.0341	[0.022-0.046] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1425	chr8	110213963	110213964	rs3890699	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	8q23.1	NUDCD1	rs3890699-?	NR	7E-9		0.012198768	[0.0081-0.0163] unit increase	NR [7306098]	N
1425	chr8	110217265	110217266	rs7823896	23049088	Meng W	2012-10-09	Invest Ophthalmol Vis Sci	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		8q23.1	intergenic	rs7823896-?	0.160	3E-6			[NR]	Affymetrix, Illumina [152234]	N
1425	chr8	110228043	110228044	rs2085629	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	8q23.1	NUDCD1, TRHR, ENY2, PKHD1L1	rs2085629-T	NR	5E-6	(number of awakenings after sleep onset)	0.09508	[0.054-0.136] unit increase	Affymetrix [7141204] (imputed)	N
1426	chr8	110244622	110244623	rs79076257	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	8q23.1	NR	rs79076257-?	NR	2E-7				Affymetrix [5486770] (imputed)	N
1426	chr8	110259376	110259377	rs2980590	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8q23.1	ENY2	rs2980590-?	NR	6E-6	(PC 38:5)	0.1571396	[0.089-0.225] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1426	chr8	110362460	110362461	rs10108704	27629089	Sailer A	2016-09-14	Neurology	A genome-wide association study in multiple system atrophy.	Multiple system atrophy (pathologically confirmed)	295 European ancestry cases, 3,864 European ancestry controls	NA	8q23.1	ENY2	rs10108704-?	NR	1E-6		1.6949153	NR	Illumina [4903804] (imputed)	N
1427	chr8	110478821	110478822	rs73313124	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	8q23.1	PKHD1L1	rs73313124-A	0.0030	3E-6	(Urinary free epinephrine )	0.02	[NR] nmol/d increase	Illumina [899892]	N
1428	chr8	110557588	110557589	rs544783630	30287806	Zhou H	2018-10-04	Transl Psychiatry	Genome-wide association study identifies glutamate ionotropic receptor GRIA4 as a risk gene for comorbid nicotine dependence and major depression.	Nicotine dependence and major depression (severity of comorbidity)	3,724 African American individuals	NA	8q23.2	EBAG9	rs544783630-C	0.0244	5E-6		1.6042	[0.91-2.29] unit increase	Illumina [9520174] (imputed)	N
1428	chr8	110585287	110585288	rs7824177	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical thickness	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	8q23.2	NR	rs7824177-A	0.8294	8E-6	(average)	0.003168436	[0.0019-0.0045] unit increase	Affymetrix, Illumina [NR]	N
1428	chr8	110600058	110600059	rs2703384	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8q23.2	EBAG9	rs2703384-?	NR	3E-6	(methionine)	0.17099173	[0.099-0.243] unit increase	Affymetrix [at least 2500000] (imputed)	N
1429	chr8	110628432	110628433	rs2844249	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	8q23.2		rs2844249-C	0.21	2E-9		5.97	z score increase	Affymetrix [9061022] (imputed)	N
1429	chr8	110637343	110637344	rs4367512	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	8q23.2		rs4367512-T	0.21	3E-12		6.97	z score increase	Affymetrix [9061022] (imputed)	N
1429	chr8	110637343	110637344	rs4367512	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	8q23.2	NR	rs4367512-T	0.2325	1E-10				NR [9056863] (imputed)	N
1429	chr8	110648271	110648272	rs16879844	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	8q23.2		rs16879844-C	0.21	2E-32		11.86	z score increase	Affymetrix [9061022] (imputed)	N
1429	chr8	110648271	110648272	rs16879844	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	8q23.2	NR	rs16879844-C	0.2322	2E-10				NR [9056863] (imputed)	N
1429	chr8	110677793	110677794	rs56838167	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia x sex interaction	31,567 European ancestry cases, 37,494 European ancestry controls, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	NA	8q23.2	SYBU	rs56838167-A	0.0331	6E-6		0.4768	[0.27-0.68] unit decrease	NR [NR] (imputed)	N
1429	chr8	110715931	110715932	rs3133941	31388106	Sofer T	2019-08-06	Sci Rep	Variants Associated with the Ankle Brachial Index Differ by Hispanic/Latino Ethnic Group: a genome-wide association study in the Hispanic Community Health Study/Study of Latinos.	Ankle-brachial index	3,637 Caribbean ancestry individuals	up to 8,527 European ancestry individuals, 2,362 African American individuals, 1,447 Hispanic/Latino individuals	8q23.2	SYBU	rs3133941-A	0.74	2E-8	(Caribbean)	0.018	[0.012-0.024] unit decrease	Illumina [27887661] (imputed)	N
1430	chr8	110776681	110776682	rs147863159	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	8q23.2	AX748380, KCNV1	rs147863159-T	NR	4E-6		0.774743	[0.44-1.11] unit increase	Illumina [at least 950000] (imputed)	N
1430	chr8	110808943	110808944	rs1552246	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	8q23.2	intergenic	rs1552246-G	0.5720000000000001	7E-6		1.0521111		NR [9372253] (imputed)	N
1430	chr8	110882002	110882003	rs144882124	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	8q23.2	AX748380, KCNV1	rs144882124-G	NR	4E-6		0.776207	[0.45-1.11] unit increase	Illumina [at least 950000] (imputed)	N
1431	chr8	110891976	110891977	rs11997465	31092297	Guan M	2019-05-15	Hum Genomics	Genome-wide association study identifies novel loci for type 2 diabetes-attributed end-stage kidney disease in African Americans.	Type 2 diabetes and end-stage kidney disease	3,432 African-American cases, 6,977 African-American controls	NA	8q23.2		rs11997465-C	0.28	3E-6		1.22	[1.12-1.33]	Affymetrix, Illumina [NR] (imputed)	N
1431	chr8	110971623	110971624	rs58365105	34446064	Cade BE	2021-08-26	Genome Med	Whole-genome association analyses of sleep-disordered breathing phenotypes in the NHLBI TOPMed program.	Obstructive sleep apnea trait (minimum oxyhemoglobin saturation across sleep episode)	5,173 European male ancestry individuals	NA	8q23.2		rs58365105-A	NR	3E-8		2.539	[1.64-3.44] unit decrease	Affymetrix, Illumina [22105437] (imputed)	N
1431	chr8	111000504	111000505	rs12682334	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure	35,269 European ancestry cases, 63,451 European ancestry controls	NA	8q23.2	NR	rs12682334-T	0.228081	6E-7		1.073	[1.04-1.1]	Affymetrix [7791636] (imputed)	N
1432	chr8	111053648	111053649	rs7000423	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	RANTES levels	3,421 Finnish ancestry individuals	NA	8q23.2	NR	rs7000423-C		2E-7		0.1318	[0.082-0.181] SD units increase	NR [10700000] (imputed)	N
1432	chr8	111067888	111067889	rs570754094	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Estradiol levels	206,927 European ancestry men	NA	8q23.2	NR	rs570754094-G	0.002114999999999978	5E-8		0.051592	[0.033-0.07] unit increase	Affymetrix [16582268] (imputed)	N
1432	chr8	111118449	111118450	rs187899339	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	8q23.2	Intergenic	rs187899339-G	0.999	2E-6	(AA)	0.361	unit increase	Illumina [NR] (imputed)	N
1433	chr8	111173805	111173806	rs2198044	28247064	Deming Y	2017-02-28	Acta Neuropathol	Genome-wide association study identifies four novel loci associated with Alzheimer's endophenotypes and disease modifiers.	Cerebrospinal T-tau levels	3,146 individuals	NA	8q23.2	KCNV1, LOC101927459	rs2198044-A	0.303	5E-6		0.028	[0.016-0.04] unit increase	Illumina [7358575] (imputed)	N
1434	chr8	111375946	111375947	rs77184728	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	8q23.2	KCNV1	rs77184728-G	NR	8E-6		0.834802	[0.47-1.2] unit decrease	Illumina [at least 950000] (imputed)	N
1435	chr8	111433155	111433156	rs75018065	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 22)	2,187 European ancestry individuals	NA	8q23.2	NR	rs75018065-A	0.03509	5E-6		0.3784	[0.22-0.54] unit increase	Illumina [10677593] (imputed)	N
1435	chr8	111471165	111471166	rs62526783	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	8q23.2	Intergenic	rs62526783-?		2E-8				NR [6786993] (imputed)	N
1435	chr8	111472013	111472014	rs36043959	29483656	Pardinas AF	2018-02-26	Nat Genet	Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.	Schizophrenia	40,675 European ancestry cases, 64,643 European ancestry controls	1,651 European ancestry cases, 4,111 cases, 142,717 European ancestry controls, 11,507 controls	8q23.2	KCNV1	rs36043959-?	NR	4E-12		1.07	[1.05-1.09]	Illumina [8000000] (imputed)	N
1435	chr8	111478320	111478321	rs13267290	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Schizophrenia (MTAG)	940,613 European ancestry individuals	NA			rs13267290-?	NR	2E-9				NR [2625067]	N
1435	chr8	111478320	111478321	rs13267290	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Schizophrenia (MTAG)	at least 33,640 European ancestry cases, at least 43,456 European ancestry controls	NA		NR	rs13267290-A	0.8082	2E-9		0.07983397	[0.054-0.106] unit decrease	NR [NR]	N
1435	chr8	111478320	111478321	rs13267290	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA		ENSG00000253107	rs13267290-?	NR	2E-9		0.015136181	[0.01-0.02] unit increase	NR [7306098]	N
1435	chr8	111485760	111485761	rs36068923	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	8q23.2	LOC10013228	rs36068923-G	NR	4E-10	(EA)	1.0869565	[1.06-1.11]	Illumina [6627481] (imputed)	N
1435	chr8	111485760	111485761	rs36068923	25056061	Ripke S	2014-07-22	Nature	Biological insights from 108 schizophrenia-associated genetic loci.	Schizophrenia	32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	1,513 European ancestry cases, 66,236 European ancestry controls	8q23.2	KCNV1	rs36068923-G	0.197	3E-11		1.0881393	[1.06-1.12]	Affymetrix, Illumina [9005918] (imputed)	N
1435	chr8	111487467	111487468	rs4642619	31268507	Periyasamy S	2019-07-03	JAMA Psychiatry	Association of Schizophrenia Risk With Disordered Niacin Metabolism in an Indian Genome-wide Association Study.	Schizophrenia	816 Indian ancestry cases, 900 Indian ancestry controls, 505 Indian ancestry cases and 871 Indian ancestry controls from 405 families, up to 36,989 European and unknown ancestry cases, up to 113,075 European and unknown ancestry controls	NA	8q23.2	NR	rs4642619-?	NR	8E-11				Illumina [up to 5582932] (imputed)	N
1435	chr8	111487467	111487468	rs4642619	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	8q23.2	intergenic	rs4642619-A		1E-10		1.08	[1.06-1.11]	Affymetrix, Illumina [NR]	N
1435	chr8	111487467	111487468	rs4642619	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	8q23.2	NR	rs4642619-A	NR	8E-11		1.09	[NR]	Illumina [7158791] (imputed)	N
1435	chr8	111506564	111506565	rs6995307	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	8q23.2	NR	rs6995307-?	NR	5E-11		1.0787487	[1.06-1.1]	Affymetrix, Illumina [12447948] (imputed)	N
1436	chr8	111561504	111561505	rs16880831	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	8q23.2	LOC10013228	rs16880831-G	NR	2E-10		1.0775862	[1.05-1.1]	Illumina [6627481] (imputed)	N
1436	chr8	111561504	111561505	rs16880831	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	8q23.2	KCNV1	rs16880831-G	NR	4E-10		1.0752687	[1.05-1.1]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1438	chr8	111880958	111880959	rs62520663	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (hospitalized covid vs population)	613 European ancestry cases, 680,416 European ancestry controls, 140 Hispanic or Latin American cases, 94,327 Hispanic or Latin American controls, 49 Black or African American cases, 22,410 Black or African American controls	NA	8q23.2		rs62520663-?	NR	3E-6		0.8468502	[0.49-1.2] unit increase	Illumina [9875426] (imputed)	N
1441	chr8	112245757	112245758	rs146167956	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	8q23.3	CSMD3	rs146167956-T	NR	7E-6		0.612082	[0.35-0.88] unit increase	Illumina [at least 950000] (imputed)	N
1442	chr8	112381795	112381796	rs4389974	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	8q23.3	CSMD3	rs4389974-C	0.526	2E-6		0.014	[0.0084-0.0202] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1443	chr8	112515011	112515012	rs28646179	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	8q23.3	CSMD3	rs28646179-A	0.0532	8E-13		0.030969024	[0.022-0.039] unit increase	Illumina [9339358] (imputed)	N
1443	chr8	112561964	112561965	rs548585383	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-to-hip ratio adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,049 whole genome sequenced individuals, 29,518 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,001 Mylopotamos (founder/genetic isolate) individuals, 867 Pomak (founder/genetic isolate) individuals	206,045 European ancestry individuals	8q23.3	RP11-1101K5.1	rs548585383-A	0.0029	4E-7		0.6165	[0.38-0.85] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1443	chr8	112561964	112561965	rs548585383	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-hip ratio	1,254 whole genome sequenced European ancestry individuals, 3,071 whole genome sequenced individuals, 29,723 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,053 Mylopotamos (founder/genetic isolate) individuals, 879 Pomak (founder/genetic isolate) individuals	206,053 European ancestry individuals	8q23.3	RP11-1101K5.1	rs548585383-A	0.0029	4E-6		0.5601	[0.32-0.8] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1444	chr8	112639014	112639015	rs58801893	34748635	Miranda JP	2021-11-08	J Clin Endocrinol Metab	Genome-Wide Association Study And Polygenic Risk Scores Of Serum Dheas Levels In A Chilean Children Cohort.	DHEAS levels	788 Hispanic or Latin American individuals	NA	8q23.3	LOC105375707	rs58801893-C	0.202	7E-6		0.07	unit increase	Illumina [5510858] (imputed)	N
1445	chr8	112740050	112740051	rs7842868	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8q23.3	KCNV1	rs7842868-?	NR	6E-6	(xanthurenate)	0.21718241	[0.12-0.31] unit increase	Affymetrix [at least 2500000] (imputed)	N
1446	chr8	112976140	112976141	rs12549576	22085899	Chen G	2011-11-16	Eur J Hum Genet	UGT1A1 is a major locus influencing bilirubin levels in African Americans.	Bilirubin levels	619 African American individuals	NA	8q23.3	AC068954.1, RP11-58O3.2	rs12549576-G	0.040	1E-6		0.3	[0.18-0.419] unit increase	Affymetrix [808465]	N
1447	chr8	113032808	113032809	rs76522264	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	8q23.3	NR	rs76522264-?	NR	2E-8				Illumina [7760689] (imputed)	N
1447	chr8	113052084	113052085	rs564265136	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Lean body mass	3,399 whole genome sequenced individuals, 11,801 European ancestry individuals	10,676 European ancestry individuals	8q23.3	RNU4-37P	rs564265136-A	0.0102	3E-6		0.2722	[0.16-0.39] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1447	chr8	113074095	113074096	rs1996720	22832960	Service SK	2012-05-15	Transl Psychiatry	A genome-wide meta-analysis of association studies of Cloninger's Temperament Scales.	Temperament	Up to 12,433 European ancestry individuals	NA	8q23.3	CSMD3	rs1996720-T	0.275	2E-6	(Reward dependence)	0.11	unit increase	Affymetrix, Illumina [1252222] (imputed)	N
1448	chr8	113115896	113115897	rs13259109	26305897	Iyengar SK	2015-08-25	PLoS Genet	Genome-Wide Association and Trans-ethnic Meta-Analysis for Advanced Diabetic Kidney Disease: Family Investigation of Nephropathy and Diabetes (FIND).	Diabetic kidney disease	1,564 African American cases, 369  African American diabetic controls, 1,288 African American non-diabetic controls, 538 American Indian ancestry cases, 319 American Indian ancestry diabetic controls, 342 European ancestry cases, 404 European ancestry diabetic controls, 779 Mexican ancestry cases, 594 Mexican ancestry diabetic controls	950 African American cases, 50 African American diabetic controls, 1,887 African American non-diabetic controls, 471 American Indian ancestry cases, 340 American Indian ancestry diabetic controls, 486 American Indian ancestry non-diabetic controls, 582 European ancestry ancestry cases, 205 European ancestry diabetic controls, 2,568 European ancestry non-diabetic controls	8q23.3	intergenic	rs13259109-G	NR	5E-6	(additive )	1.19	[1.11-1.27]	Affymetrix [NR]	N
1450	chr8	113398090	113398091	rs17640016	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8q23.3	KCNV1	rs17640016-?	NR	8E-6	(dimethylglycine)	0.17403881	[0.097-0.251] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1450	chr8	113422381	113422382	rs12677056	26488411	Matsukura M	2015-10-21	PLoS One	Genome-Wide Association Study of Peripheral Arterial Disease in a Japanese Population.	Peripheral artery disease	785 Japanese ancestry cases, 3,383 Japanese ancestry controls	2,379 Japanese ancestry cases, 16,752 Japanese ancestry controls	8q23.3	CSMD3	rs12677056-C	NR	3E-6		1.28	[1.16-1.43]	Illumina [431666]	N
1451	chr8	113581897	113581898	rs117648881	30818990	Yu D	2019-03-01	Am J Psychiatry	Interrogating the Genetic Determinants of Tourette's Syndrome and Other Tic Disorders Through Genome-Wide Association Studies.	Tourette syndrome	4,271 European ancestry cases, 548 European ancestry cases from 207 families, 9,488 European ancestry controls	706 Icelandic ancestry cases, 6,068 Icelandic ancestry controls	8q23.3	CSMD3, MIR2053	rs117648881-G	0.9762	6E-7		1.6571512		Illumina [8265319] (imputed)	N
1452	chr8	113756717	113756718	rs1549351	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8q23.3	TRPS1	rs1549351-?	NR	2E-6	(adenosine monophosphate)	0.19469516	[0.11-0.27] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1453	chr8	113805520	113805521	rs34742539	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	8q23.3	NR	rs34742539-?	NR	1E-7				Affymetrix [NR]	N
1455	chr8	114039679	114039680	rs9283946	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	8q23.3	NR	rs9283946-?	NR	4E-14				Affymetrix [NR]	N
1455	chr8	114154186	114154187	rs10955647	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	8q23.3	NR	rs10955647-T	0.5321	2E-8		1.034	[1.02-1.05]	Affymetrix, Illumina [NR] (imputed)	N
1456	chr8	114292795	114292796	rs116276540	27611488	Almoguera B	2016-09-09	Am J Respir Crit Care Med	Identification of Four Novel Loci in Asthma in European American and African American Populations.	Asthma	819 African American non-allergic asthma cases, 2,218 African American allergic asthma cases 4,360 African American controls, 808 European American non-allergic asthma cases, 1,464 European American allergic asthma cases, 11,975 European American controls	NA	8q23.3	CSMD3	rs116276540-?		3E-6	(AA)	0.543	[0.39-0.7] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1457	chr8	114407099	114407100	rs150537045	30166627	Massey J	2018-08-31	Pharmacogenomics J	Genome-wide association study of response to tumour necrosis factor inhibitor therapy in rheumatoid arthritis.	Response to TNF inhibitor in rheumatoid arthritis (change in swollen 28-joint count)	551 European ancestry individuals treated with adalimumab, 619 European ancestry individuals treated with etanercept, 434 European ancestry individuals treated with infliximab, 119 European ancestry individuals treated with other TNF inhibitors	NA	8q23.3	CSMD3	rs150537045-?		8E-6	(Adalimumab)	0.56	[NR] unit decrease	Affymetrix, Illumina [9814288] (imputed)	N
1457	chr8	114407099	114407100	rs150537045	30166627	Massey J	2018-08-31	Pharmacogenomics J	Genome-wide association study of response to tumour necrosis factor inhibitor therapy in rheumatoid arthritis.	Response to TNF inhibitor in rheumatoid arthritis (change in swollen 28-joint count)	551 European ancestry individuals treated with adalimumab, 619 European ancestry individuals treated with etanercept, 434 European ancestry individuals treated with infliximab, 119 European ancestry individuals treated with other TNF inhibitors	NA	8q23.3	CSMD3	rs150537045-?		2E-8	(All TNF inhibitors combined)	0.5	[0.32-0.68] unit decrease	Affymetrix, Illumina [9814288] (imputed)	N
1458	chr8	114465270	114465271	rs62522261	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Gamma glutamyl transferase levels in low alcohol consumption	8,716 individuals	NA	8q23.3	NR	rs62522261-?	NR	1E-7		0.0994	[0.063-0.136] unit increase	Illumina [~ 7800000] (imputed)	N
1458	chr8	114509248	114509251	rs139683691	28927378	Qian DC	2017-09-19	BMC Genomics	Genome-wide imaging association study implicates functional activity and glial homeostasis of the caudate in smoking addiction.	Caudate activity during reward	106 individuals	NA	8q23.3	NR	rs139683691-C	0.0605971	4E-6		1.3790523	[0.83-1.93] unit increase	Illumina [at least 621854] (imputed)	N
1459	chr8	114568217	114568218	rs145712811	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (PANSS score)	1,390 European ancestry individuals	NA	8q23.3		rs145712811-A	NR	2E-6	(GLM)	13.4185	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
1459	chr8	114582091	114582092	rs62520133	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Gamma glutamyl transferase levels in low alcohol consumption	8,716 individuals	NA	8q23.3	NR	rs62520133-?	NR	5E-6		0.0605	[0.035-0.086] unit increase	Illumina [~ 7800000] (imputed)	N
1459	chr8	114662250	114662251	rs60336366	24939585	Fransen E	2014-06-18	Eur J Hum Genet	Genome-wide association analysis demonstrates the highly polygenic character of age-related hearing impairment.	Age-related hearing impairment	1,489 European ancestry individuals	NA	8q23.3	intergenic	rs60336366-?		4E-6	(PC2)	0.2742	[NR] unit increase	Illumina [4167292] (imputed)	N
1460	chr8	114727601	114727602	rs189590409	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	8q23.3	Intergenic	rs189590409-A	NR	2E-7	(between families)	5.243	unit increase	Affymetrix [up to 15107142] (imputed)	N
1460	chr8	114801368	114801369	rs75707456	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Sensorimotor dexterity	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	8q23.3	intergenic	rs75707456-G	NR	8E-6		0.41099373	[0.22-0.61] unit decrease	Illumina [> 6200000] (imputed)	N
1461	chr8	114873379	114873380	rs1912816	23897914	Wang H	2013-07-29	Pediatrics	A genome-wide association study (GWAS) for bronchopulmonary dysplasia.	Bronchopulmonary dysplasia	117 African American newborn cases, 108 African American newborn controls, 448 Hispanic newborn cases, 460 Hispanic newborn controls, 74 Asian or Pacific Islander ancestry newborn cases, 93 Asian or Pacific Islander ancestry newborn controls, 174 European ancestry newborn cases, 216 European ancestry newborn controls, 14 newborn cases, 22 newborn controls	371 newborn cases, 424 newborn controls	8q23.3	CSMD3, TRPS1	rs1912816-A	0.62	6E-6	(Dominant model)	1.2821	[NR]	Illumina [1795103]	N
1461	chr8	114885431	114885432	rs6469488	24280104	Wu AC	2013-11-23	J Allergy Clin Immunol	Inhaled corticosteroid treatment modulates ZNF432 gene variant's effect on bronchodilator response in asthmatics.	Bronchodilator response in asthma (inhaled corticosteroid treatment interaction)	172 European ancestry cases, 409 European ancestry controls	227 European ancestry cases	8q23.3	NR	rs6469488-G	0.07	7E-6				Illumina [449540]	N
1461	chr8	114912882	114912883	rs79866225	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	8q23.3	intergenic	rs79866225-C	0.0159189234148589	5E-6	(G_Coprococcus_HB)	1.0982	[0.63-1.57] unit decrease	Illumina [7711310] (imputed)	N
1462	chr8	115006289	115006290	rs111435886	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	8q23.3	intergenic	rs111435886-C	0.0207160922543923	5E-6	(G_Gemmiger_HB)	1.05636	[0.6-1.51] unit decrease	Illumina [7711310] (imputed)	N
1462	chr8	115012596	115012597	rs2203098	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	8q23.3	CSMD3	rs2203098-G	NR	7E-10	(AA)			Illumina [8380626] (imputed)	N
1462	chr8	115012596	115012597	rs2203098	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	8q23.3	CSMD3	rs2203098-G	NR	5E-8				Illumina [8380626] (imputed)	N
1462	chr8	115044265	115044266	rs80176672	33841421	Li J	2021-03-25	Front Immunol	Variants at the MHC Region Associate With Susceptibility to <i>Clostridioides difficile</i> Infection: A Genome-Wide Association Study Using Comprehensive Electronic Health Records.	Clostridioides difficle infection	1,160 European ancestry cases, 14,144 European ancestry controls	NA	8q23.3	NR	rs80176672-T	0.0122	3E-6		1.96	[1.54-2.44]	Illumina [64973696] (imputed)	N
1463	chr8	115121026	115121027	rs9942773	22699663	Divaris K	2012-07-01	J Dent Res	Genome-wide association study of periodontal pathogen colonization.	Periodontal microbiota	1,020 European ancestry individuals	NA	8q23.3	CSMD3, TRPS1	rs9942773-A	0.703	2E-6	(Orange)	2.07	[1.51-2.82]	Affymetrix [~ 2500000] (imputed)	N
1463	chr8	115168757	115168758	rs113785116	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or major depressive disorder	11,361 European ancestry schizophrenia female cases, 20,206 European ancestry schizophrenia male cases, 11,897 European ancestry bipolar disorder female cases, 8,027 European ancestry bipolar disorder male cases, 10,865 European ancestry major depressive disorder female cases, 5,105 major depressive disorder male cases, 46,410 European ancestry female controls, 46,615 European ancestry male controls, 686 East Asian ancestry schizophrenia female cases, 1,907 East Asian ancestry female controls, 1,150 East Asian ancestry schizophrenia male cases, 1,476 East Asian ancestry male controls	NA	8q23.3	CSMD3, TRPS1	rs113785116-A	0.9649	3E-6	(male)	0.1797	[0.1-0.25] unit decrease	NR [NR] (imputed)	N
1463	chr8	115168757	115168758	rs113785116	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or major depressive disorder	11,361 European ancestry schizophrenia female cases, 20,206 European ancestry schizophrenia male cases, 11,897 European ancestry bipolar disorder female cases, 8,027 European ancestry bipolar disorder male cases, 10,865 European ancestry major depressive disorder female cases, 5,105 major depressive disorder male cases, 46,410 European ancestry female controls, 46,615 European ancestry male controls	NA	8q23.3	CSMD3, TRPS1	rs113785116-A	NR	9E-7	(male)	0.19	[0.11-0.27] unit decrease	NR [NR] (imputed)	N
1464	chr8	115291965	115291966	rs16885690	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	8q23.3	NR	rs16885690-?	NR	1E-6				Affymetrix [NR]	N
1464	chr8	115324067	115324068	rs13281609	26030696	Cho MH	2015-06-01	Am J Respir Crit Care Med	A Genome-Wide Association Study of Emphysema and Airway Quantitative Imaging Phenotypes.	Airway imaging phenotypes	5,385 European ancestry chronic obstructive pulmonary disease cases, 901 African American chronic obstructive pulmonary disease cases, 3,613 European ancestry controls, 2,132 African American controls	NA	8q23.3	CSMD3	rs13281609-T	NR	3E-7	(Pi10, All)	0.044	[0.02-0.06] unit decrease	Illumina [7600000] (imputed)	N
1465	chr8	115358828	115358829	rs6469519	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	8q23.3	NA	rs6469519-G		2E-9		0.0111373	[0.0075-0.0148] unit increase	Illumina [13288253] (imputed)	N
1465	chr8	115374641	115374642	rs290601	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	8q23.3	NR	rs290601-T	0.274	3E-11		0.00803501	[0.0057-0.0104] unit increase	NR [9732723] (imputed)	N
1465	chr8	115374641	115374642	rs290601	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	8q23.3	NR	rs290601-T	0.274	1E-8		0.016310181	[0.011-0.022] unit increase	NR [~ 10000000] (imputed)	N
1465	chr8	115382483	115382484	rs9643087	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	8q23.3	intergenic	rs9643087-C	0.475014	9E-11		0.0135261	[0.0094-0.0176] unit increase	NR [16516521] (imputed)	N
1465	chr8	115422997	115422998	rs209684	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	8q23.3		rs209684-C	0.728	2E-13		0.01	[0.008-0.012] unit decrease	NR [NR] (imputed)	N
1465	chr8	115465476	115465477	rs11996955	31005965	Coltell O	2019-04-21	Am J Clin Nutr	Association between taste perception and adiposity in overweight or obese older subjects with metabolic syndrome and identification of novel taste-related genes.	Bitter taste perception (phenylthiocarbamide) in obesity with metabolic syndrome	372 individuals	NA	8q23.3	intergenic	rs11996955-A	0.134	4E-6		0.595	[0.34-0.85] unit increase	Illumina [622468]	N
1466	chr8	115509105	115509106	rs16885997	28078323	Raj T	2016-12-21	Neurol Genet	Genetic architecture of age-related cognitive decline in African Americans.	Cognitive decline (age-related)	3,964 African American ancestry individuals.	NA	8q23.3	TRPS1, CSMD3	rs16885997-?		3E-7		0.009	unit decrease	Illumina [13900000] (imputed)	N
1466	chr8	115578306	115578307	rs7014900	23726511	Xie P	2013-05-28	Biol Psychiatry	Genome-wide association study identifies new susceptibility loci for posttraumatic stress disorder.	Post-traumatic stress disorder (asjusted for relatedness)	up to 308 European ancestry cases, up to 1,538 European ancestry controls, up to 456 African American cases, up to 2,936 African American controls	NA	8q23.3	TRPS1	rs7014900-?	NR	4E-6	(Trauma exposed controls; AA)			Illumina [up to 871502]	N
1466	chr8	115578306	115578307	rs7014900	23726511	Xie P	2013-05-28	Biol Psychiatry	Genome-wide association study identifies new susceptibility loci for posttraumatic stress disorder.	Post-traumatic stress disorder (asjusted for relatedness)	up to 308 European ancestry cases, up to 1,538 European ancestry controls, up to 456 African American cases, up to 2,936 African American controls	NA	8q23.3	TRPS1	rs7014900-?	NR	2E-6	(Whole cohort; AA)			Illumina [up to 871502]	N
1467	chr8	115620459	115620460	rs16886173	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels (BMI interaction)	up to 15,007 European ancestry male individuals, up to 16,943 European ancestry female individuals	NA	8q23.3	CSMD3, TRPS1	rs16886173-G	0.07	7E-7	(Men)	0.028950978	[0.017-0.04] unit increase	Affymetrix, Illumina [at least 188473] (imputed)	N
1468	chr8	115798423	115798424	rs72672052	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	8q23.3		rs72672052-A	0.1753	5E-8		0.0101	[0.0066-0.0136] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1468	chr8	115798423	115798424	rs72672052	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	8q23.3	Intergenic	rs72672052-A	0.1753	5E-8	(MTAG)	0.0094	[0.0061-0.0127] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1468	chr8	115851351	115851352	rs7004742	31707593	Kulminski AM	2019-11-09	Geroscience	Polygenic risk score for disability and insights into disability-related molecular mechanisms.	Disability (impaired activities of daily living)	7,544 European ancestry cases, 4,619 European ancestry controls	5,006 European ancestry cases, 6,899 European ancestry controls	8q23.3	TRPS1	rs7004742-C	0.329	7E-6		0.1	[0.057-0.143] unit decrease	Illumina [NR]	N
1469	chr8	115890503	115890504	rs10505232	29538362	Jilling T	2018-03-14	Pediatr Res	Surgical necrotizing enterocolitis in extremely premature neonates is associated with genetic variations in an intergenic region of chromosome eight.	Surgical necrotising enterocolitis in extremely premature birth	20 African American cases, 6 Hispanic Caucasian cases, 4 European ancestry cases,  283 African American controls, 130 Hispanic Caucasian controls, 133 European ancestry controls,	NA	8q23.3	NR	rs10505232-?	NR	7E-9				Illumina [8270200] (imputed)	N
1469	chr8	115920282	115920283	rs2884260	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8q23.3	CSMD3	rs2884260-?	NR	3E-6	(tyrosine)	0.18600525	[0.11-0.26] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1470	chr8	116009905	116009906	rs1684978	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	8q23.3	NR	rs1684978-?	NR	6E-6	(AA)	3.91	[3.17-4.65]	Illumina [905956]	N
1470	chr8	116037118	116037119	rs1865874	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8q23.3	CSMD3	rs1865874-?	NR	2E-6	(tyrosine)	0.17948003	[0.11-0.25] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1470	chr8	116048006	116048007	rs72675948	33841421	Li J	2021-03-25	Front Immunol	Variants at the MHC Region Associate With Susceptibility to <i>Clostridioides difficile</i> Infection: A Genome-Wide Association Study Using Comprehensive Electronic Health Records.	Clostridioides difficle infection in antibiotics-users	587 European ancestry cases, 3,166 European ancestry controls	NA	8q23.3	NR	rs72675948-T	0.027	8E-6		2.07	[1.56-2.68]	Illumina [64973696] (imputed)	N
1470	chr8	116081493	116081494	rs2036013	32682390	Wang W	2020-07-18	BMC Genomics	Heritability and genome-wide association analyses of fasting plasma glucose in Chinese adult twins.	Fasting plasma glucose	382 Chinese ancestry twin pairs	NA	8q23.3	LOC107986901	rs2036013-?		3E-6				NR [7405822] (imputed)	N
1470	chr8	116110724	116110725	rs218361	22911880	Boraska V	2012-08-22	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association analysis of eating disorder-related symptoms, behaviors, and personality traits.	Eating disorders	Up to 2,567 European ancestry individuals	Up to 767 European ancestry cases, up to 486  European ancestry controls	8q23.3	TRPS1	rs218361-G	0.429	7E-6	(WF)	1.061	[1.03-1.08]	Illumina [283744]	N
1471	chr8	116157626	116157627	rs12546151	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8q23.3	NR	rs12546151-T	0.01742	4E-9	(ITIH4)	0.04557	NR unit increase	Illumina [1671387] (imputed)	N
1471	chr8	116163862	116163863	rs1845529	26379185	Garcia-Etxebarria K	2015-09-17	PLoS One	No Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity.	Severe influenza A (H1N1) infection	49 European ancestry severe cases, 549 European ancestry population controls	NA	8q23.3	TRPS1, CSMD3	rs1845529-?	0.0	6E-11				Affymetrix [547296]	N
1471	chr8	116246666	116246667	rs16887197	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal cancer	978 Austrian ancestry colorectal cancer cases, 636 Austrian ancestry advanced colorectal adenoma cases, 4,294 European ancestry controls	NA	8q23.3	Intergenic	rs16887197-?		2E-6		1.5629884	[NR]	Affymetrix [492217] (imputed)	N
1472	chr8	116330854	116330855	rs6983039	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	8q23.3	NR	rs6983039-G	0.971469000267499	9E-6	(IGP34)	0.4445	[0.25-0.64] unit decrease	Illumina [~ 2500000] (imputed)	N
1473	chr8	116394074	116394075	rs17658378	18937294	Lasky-Su J	2008-12-05	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association scan of the time to onset of attention deficit hyperactivity disorder.	Attention deficit hyperactivity disorder (time to onset)	930 European ancestry trios	NA	8q23.3	intergenic	rs17658378-A	NR	9E-6	(later onset)			Perlegen [429981]	N
1473	chr8	116396325	116396326	rs13265665	34271060	DeVore SB	2021-07-13	J Allergy Clin Immunol	Novel Role for Caspase Recruitment Domain Family Member 14 and its Genetic Variant rs11652075 in Skin Filaggrin Homeostasis.	Non(never)-lesional skin FLG expression levels in childhood atopic dermatitis	240 Black or unknown ancestry individuals	NA	8q23.3		rs13265665-A	NR	4E-6	8	0.81	unit decrease	Illumina [487523]	N
1473	chr8	116410624	116410625	rs16887411	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8q23.3	NR	rs16887411-C	0.01045	8E-9	(CES2)	0.371	NR unit increase	Illumina [1671387] (imputed)	N
1473	chr8	116411900	116411901	rs12543458	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	8q23.3		rs12543458-?	NR	8E-17				NR [~ 8900000] (imputed)	N
1473	chr8	116417562	116417563	rs231147	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	8q23.3	TRPS1	rs231147-C	NR	7E-6	(sleep onset irregularity, weekdays)	0.04884	[0.028-0.07] unit decrease	Affymetrix [7141204] (imputed)	N
1473	chr8	116429997	116429998	rs808994	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	8q23.3	NR	rs808994-?	NR	4E-11				Affymetrix [~ 8270000] (imputed)	N
1473	chr8	116436384	116436385	rs800895	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	8q23.3	NR	rs800895-G	NR	1E-10		0.0203	[0.014-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
1473	chr8	116439638	116439639	rs800890	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	8q23.3	NR	rs800890-T	0.229196	2E-18		0.0326278	[0.025-0.04] unit increase	NR [19129689] (imputed)	N
1473	chr8	116439638	116439639	rs800890	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		8q23.3	TRPS1	rs800890-C	NR	2E-8		0.0411213	NR unit decrease	NR [NR] (imputed)	N
1473	chr8	116444250	116444251	rs13270346	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	8q23.3	Intergenic	rs13270346-A	0.3431	2E-8	(MTAG)	0.0106	[0.0069-0.0143] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1473	chr8	116464987	116464988	rs800888	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	8q23.3	TRPS1	rs800888-C	0.4555	3E-25		0.03755565	[0.03-0.045] unit increase	Affymetrix [~ 2500000] (imputed)	N
1473	chr8	116480752	116480753	rs1483582	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	8q23.3		rs1483582-A	0.769529	6E-10		0.0242942	[0.017-0.032] unit decrease	Illumina [13478928] (imputed)	N
1473	chr8	116486441	116486442	rs800870	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	8q23.3	Intergenic	rs800870-C	0.5559	3E-10		0.0124	[0.0085-0.0163] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1473	chr8	116495908	116495909	rs800911	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	8q23.3	TRPS1	rs800911-A		3E-14		0.02	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
1473	chr8	116495908	116495909	rs800911	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	8q23.3	NR	rs800911-A	0.22707	4E-8		0.0443148	[0.028-0.06] unit decrease	Affymetrix [17914406] (imputed)	N
1473	chr8	116495908	116495909	rs800911	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	8q23.3	TRPS1	rs800911-A	0.2271	3E-12		0.02957466	[0.021-0.038] unit increase	Affymetrix [~ 2500000] (imputed)	N
1473	chr8	116499624	116499625	rs35098703	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	8q23.3	TRPS1	rs35098703-A	0.45519	7E-21		0.020818576	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1473	chr8	116500396	116500397	rs2625672	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	8q23.3		rs2625672-?	NR	2E-17				NR [~ 8900000] (imputed)	N
1473	chr8	116505083	116505084	rs800882	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	8q23.3	NR	rs800882-G	0.453928	7E-29		0.021649	[0.018-0.025] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1473	chr8	116518833	116518834	rs3808426	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	8q23.3	TRPS1	rs3808426-A		1E-14		0.017	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
1473	chr8	116522024	116522025	rs2293888	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	8q23.3	NR	rs2293888-?	NR	3E-15				Affymetrix [~ 8270000] (imputed)	N
1474	chr8	116531796	116531797	rs3824200	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q23.3	NR	rs3824200-A	0.604301	2E-41				Affymetrix, Illumina [24332387] (imputed)	N
1474	chr8	116531796	116531797	rs3824200	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q23.3	NR	rs3824200-A	0.599853	4E-35				Affymetrix, Illumina [24653286] (imputed)	N
1474	chr8	116531796	116531797	rs3824200	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	8q23.3	NR	rs3824200-A	0.548954	8E-27		0.019864	[0.016-0.023] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
1474	chr8	116531796	116531797	rs3824200	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q23.3	NR	rs3824200-A	0.597404	2E-43				Affymetrix, Illumina [24558453] (imputed)	N
1474	chr8	116531796	116531797	rs3824200	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	8q23.3	NR	rs3824200-A	0.548914	1E-33		0.022428	[0.019-0.026] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
1474	chr8	116533757	116533758	rs1905376	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	8q23.3		rs1905376-G	NR	6E-22		0.0173	[0.014-0.021] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
1474	chr8	116533757	116533758	rs1905376	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	8q23.3	TRPS1	rs1905376-G	0.5473	1E-13		0.02666617	[0.02-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
1474	chr8	116533757	116533758	rs1905376	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	8q23.3	TRPS1	rs1905376-G	0.5473	6E-14		0.02671075	[0.02-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
1474	chr8	116542966	116542967	rs9643105	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	149,861 East Asian ancestry individuals	NA	8q23.3	NR	rs9643105-T	0.224481	9E-10		0.026985	[0.018-0.036] SD units decrease	Affymetrix, Illumina [16709126] (imputed)	N
1474	chr8	116542966	116542967	rs9643105	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	142,940 East Asian ancestry individuals	NA	8q23.3	NR	rs9643105-T	0.229071	3E-11		0.029753	[0.021-0.038] SD units decrease	Affymetrix, Illumina [16289021] (imputed)	N
1474	chr8	116547958	116547959	rs12677858	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	8q23.3		rs12677858-A	NR	3E-8		0.0124	[0.0081-0.0167] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
1474	chr8	116547958	116547959	rs12677858	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	150,708 East Asian ancestry individuals	NA	8q23.3	NR	rs12677858-T	0.226762	7E-13		0.031614	[0.023-0.04] SD units decrease	Affymetrix, Illumina [16709798] (imputed)	N
1474	chr8	116551404	116551405	rs11778934	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	8q23.3		rs11778934-C	0.464395	1E-8		0.0229822	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
1474	chr8	116551404	116551405	rs11778934	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	8q23.3		rs11778934-C	0.464393	2E-8		0.0222869	[0.015-0.03] unit increase	NR [11722792] (imputed)	N
1474	chr8	116551404	116551405	rs11778934	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	8q23.3	NR	rs11778934-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1474	chr8	116551404	116551405	rs11778934	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	8q23.3		rs11778934-?	NR	4E-10				NR [~ 8900000] (imputed)	N
1474	chr8	116551404	116551405	rs11778934	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	8q23.3		rs11778934-?	NR	2E-7				NR [~ 8900000] (imputed)	N
1474	chr8	116555359	116555360	rs12543799	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	8q23.3		rs12543799-A	NR	3E-32		0.0252	[0.021-0.029] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
1474	chr8	116555359	116555360	rs12543799	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	8q23.3		rs12543799-A	NR	7E-57		0.0337	[0.03-0.038] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
1474	chr8	116555840	116555841	rs1483585	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	8q23.3		rs1483585-T	NR	1E-23		0.017	[0.014-0.02] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
1474	chr8	116555840	116555841	rs1483585	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	8q23.3		rs1483585-T	NR	9E-28		0.019	[0.016-0.022] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
1474	chr8	116557954	116557955	rs12056626	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	8q23.3	TRPS1	rs12056626-G	0.552966	6E-19		0.019809132	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1474	chr8	116557954	116557955	rs12056626	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	8q23.3	TRPS1	rs12056626-G	0.552987	1E-23		0.022390349	[0.018-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1474	chr8	116560618	116560619	rs7825679	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	153,512 East Asian ancestry individuals	NA	8q23.3		rs7825679-C	0.769753	2E-13		0.0273652	[0.02-0.035] unit increase	Illumina [13479135] (imputed)	N
1474	chr8	116560618	116560619	rs7825679	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	152,447 East Asian ancestry individuals	NA	8q23.3		rs7825679-C	0.769595	7E-11		0.0237807	[0.017-0.031] unit increase	Illumina [13478948] (imputed)	N
1474	chr8	116560618	116560619	rs7825679	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	153,015 East Asian ancestry individuals	NA	8q23.3		rs7825679-C	0.769707	3E-12		0.0258833	[0.019-0.033] unit increase	Illumina [13478961] (imputed)	N
1474	chr8	116560966	116560967	rs3808436	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	8q23.3		rs3808436-G	NR	9E-9		0.0115	[0.0076-0.0154] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1474	chr8	116563572	116563573	rs3808438	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	74,970 East Asian ancestry individuals	NA	8q23.3		rs3808438-C	0.769012	7E-17		0.0466016	[0.036-0.058] unit increase	Illumina [13465896] (imputed)	N
1474	chr8	116563674	116563675	rs3808439	31589552	Lind L	2019-10-07	Metab Syndr Relat Disord	Genome-Wide Association Study of the Metabolic Syndrome in UK Biobank.	Metabolic syndrome	291,107 European ancestry individuals	NA	8q23.3	TRPS1	rs3808439-A	0.447923	5E-9		0.0383457	[0.025-0.051] unit increase	Affymetrix [9463307] (imputed)	N
1474	chr8	116563878	116563879	rs1351744	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	High density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	8q23.3	TRPS1	rs1351744-?		8E-19		0.0413	[0.032-0.051] unit increase	Illumina [31500000] (imputed)	N
1474	chr8	116563878	116563879	rs1351744	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	8q23.3		rs1351744-?	NR	2E-7				NR [~ 8900000] (imputed)	N
1474	chr8	116565364	116565365	rs3802219	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	8q23.3	NR	rs3802219-C	0.6082	1E-19		0.0357	[0.028-0.043] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1474	chr8	116575458	116575459	rs3808447	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	High density lipoprotein cholesterol levels	70,657 Japanese ancestry individuals	NA	8q23.3	TRPS1	rs3808447-?	NR	4E-15		0.04848	[0.036-0.061] unit increase novel	Illumina [6108953] (imputed)	N
1474	chr8	116577713	116577714	rs199816436	27424798	Chahal HS	2016-07-18	Nat Commun	Genome-wide association study identifies novel susceptibility loci for cutaneous squamous cell carcinoma.	Cutaneous squamous cell carcinoma	6,579 European ancestry cases, 280,558 European ancestry controls	825 European ancestry cases, 11,518 European ancestry controls	8q23.3	TRPS1	rs199816436-?	0.44	1E-6		1.1		Affymetrix, Illumina [at least 560000] (imputed)	N
1474	chr8	116580067	116580068	rs7006935	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	8q23.3	NR	rs7006935-G	NR	1E-9		0.0221	[0.015-0.029] unit increase	Affymetrix [9000000] (imputed)	N
1474	chr8	116584108	116584109	rs3808454	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	8q23.3		rs3808454-T	0.439	9E-16				Affymetrix [10369434] (imputed)	N
1474	chr8	116588545	116588546	rs2049865	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	8q23.3	TRPS1	rs2049865-A	0.578298576198866	6E-9		0.0031835	[NR] unit increase	Affymetrix [> 30000000] (imputed)	N
1474	chr8	116588569	116588570	rs2049867	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	8q23.3		rs2049867-?	NR	2E-6		0.00964289	[0.0056-0.0137] unit increase	NR [6912294] (imputed)	N
1474	chr8	116593597	116593598	rs4599845	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q23.3	NR	rs4599845-C	0.601335	5E-11				Affymetrix, Illumina [24588908] (imputed)	N
1474	chr8	116596187	116596188	rs6469603	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	8q23.3		rs6469603-C	0.42	9E-14		7.45	z score increase	Affymetrix [9061022] (imputed)	N
1474	chr8	116596187	116596188	rs6469603	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	8q23.3	TRPS1	rs6469603-T	0.563253	7E-51		0.03354236	[0.029-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
1474	chr8	116596187	116596188	rs6469603	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	8q23.3	TRPS1	rs6469603-?		3E-9				NR [7428630] (imputed)	N
1474	chr8	116597408	116597409	rs13271228	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q23.3	NR	rs13271228-G	0.598763	1E-57				Affymetrix, Illumina [23467995] (imputed)	N
1474	chr8	116597408	116597409	rs13271228	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	8q23.3	NR	rs13271228-G	0.567054	4E-59		0.03058	[0.027-0.034] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1474	chr8	116597408	116597409	rs13271228	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	8q23.3	TRPS1	rs13271228-G	0.5658	2E-24		0.03683274	[0.03-0.044] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1474	chr8	116597715	116597716	rs3808461	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	8q23.3	TRPS1	rs3808461-C	0.434428	1E-42		0.030532395	[0.026-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
1474	chr8	116599198	116599199	rs2293889	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q23.3	NR	rs2293889-T	NR	5E-15		0.028	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1474	chr8	116599198	116599199	rs2293889	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q23.3	NR	rs2293889-T	0.423	2E-11	(EA)	0.025	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1474	chr8	116599198	116599199	rs2293889	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	HDL cholesterol levels	34,930 East Asian ancestry individuals, 187,167 European ancestry individuals	8,741 Chinese ancestry individuals	8q23.3	TRPS1	rs2293889-T	0.413	5E-19	(Trans-ethnic initial)	0.0312	[0.024-0.038] unit decrease (EA Beta values)	Affymetrix, Illumina [~ 1900000] (imputed)	N
1474	chr8	116599198	116599199	rs2293889	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	8q23.3	TRPS1	rs2293889-T	0.41	4E-17		0.031	[NR] unit decrease	NR [NR] (imputed)	N
1474	chr8	116599198	116599199	rs2293889	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	HDL cholesterol	99,900 European ancestry individuals	NA	8q23.3	TRPS1	rs2293889-T	0.41	6E-11		0.44	[0.28-0.6] mg/dL decrease	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1474	chr8	116601893	116601894	rs6469605	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	8q23.3	TRPS1	rs6469605-C	0.431501	3E-61		0.0317165	[0.028-0.035] unit decrease	Affymetrix [NR] (imputed)	N
1474	chr8	116601893	116601894	rs6469605	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	8q23.3	TRPS1	rs6469605-C	0.431617	6E-70		0.0350594	[0.031-0.039] unit decrease	Affymetrix [NR] (imputed)	N
1474	chr8	116601901	116601902	rs6469606	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	8q23.3	TRPS1	rs6469606-T	0.5667	6E-22		0.03488275	[0.028-0.042] unit increase	Affymetrix [~ 2500000] (imputed)	N
1474	chr8	116602854	116602855	rs10505258	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x short total sleep time interaction (2df test)	3,007 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,474 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, up to 11,901 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,567 European ancestry controls, 4,047 Hispanic/Latino controls	up to 221 African American short sleepers, 629 East Asian ancestry short sleepers, up to 9,585 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 2,504 East Asian ancestry controls, up to 38,027 European ancestry controls, 10,061 Hispanic controls	8q23.3	TRPS1	rs10505258-?	NR	2E-18		0.007095	[0.0052-0.009] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
1474	chr8	116602854	116602855	rs10505258	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	8q23.3	TRPS1	rs10505258-?	NR	1E-18		0.028569655	[0.022-0.035] unit decrease	Illumina [27896057] (imputed)	N
1474	chr8	116602873	116602874	rs13275142	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	8q23.3		rs13275142-A	0.738549	2E-14		0.0175306	[0.013-0.022] unit decrease	Illumina [13479295] (imputed)	N
1474	chr8	116603002	116603003	rs2737203	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q23.3	NR	rs2737203-T	NR	3E-15		0.028	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1474	chr8	116603002	116603003	rs2737203	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q23.3	NR	rs2737203-T	0.423	2E-11	(EA)	0.026	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1474	chr8	116603102	116603103	rs2721954	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	8q23.3	TRPS1	rs2721954-T	0.609	1E-26		0.0305	[0.025-0.036] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1474	chr8	116610179	116610180	rs2737205	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	8q23.3		rs2737205-T	0.438642	9E-15		0.0284256	[0.021-0.036] unit decrease	NR [11722792] (imputed)	N
1474	chr8	116610179	116610180	rs2737205	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	8q23.3		rs2737205-T	0.438642	9E-9		0.0239562	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
1474	chr8	116610179	116610180	rs2737205	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large HDL	115,082 European ancestry individuals	NA	8q23.3		rs2737205-T	0.438642	1E-15		0.0293886	[0.022-0.037] unit decrease	NR [11722792] (imputed)	N
1474	chr8	116610179	116610180	rs2737205	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	8q23.3		rs2737205-T	0.438651	2E-12		0.0260333	[0.019-0.033] unit increase	NR [11722792] (imputed)	N
1474	chr8	116610179	116610180	rs2737205	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	8q23.3		rs2737205-T	0.438642	2E-12		0.0259213	[0.019-0.033] unit decrease	NR [11722792] (imputed)	N
1474	chr8	116610179	116610180	rs2737205	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	8q23.3		rs2737205-T	0.438642	9E-15		0.0283839	[0.021-0.036] unit decrease	NR [11722792] (imputed)	N
1474	chr8	116610179	116610180	rs2737205	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	8q23.3		rs2737205-T	0.438642	4E-12		0.0256181	[0.018-0.033] unit decrease	NR [11722792] (imputed)	N
1474	chr8	116610179	116610180	rs2737205	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	8q23.3		rs2737205-T	0.438642	3E-12		0.0257361	[0.019-0.033] unit decrease	NR [11722792] (imputed)	N
1474	chr8	116610179	116610180	rs2737205	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	8q23.3		rs2737205-T	0.438642	1E-13		0.0274455	[0.02-0.035] unit decrease	NR [11722792] (imputed)	N
1474	chr8	116611631	116611632	rs7834300	32041948	Sarin KY	2020-02-10	Nat Commun	Genome-wide meta-analysis identifies eight new susceptibility loci for cutaneous squamous cell carcinoma.	Cutaneous squamous cell carcinoma	19,149 European ancestry cases, 680,049 European ancestry controls	NA	8q23.3	TRPS1	rs7834300-G	0.438	2E-9		0.07	[0.05-0.09] unit increase	NR [13607369] (imputed)	N
1474	chr8	116613257	116613258	rs2721929	32339537	Roberts V	2020-04-24	J Invest Dermatol	Genome wide association study identifies genetic associations with perceived age.	Youthful appearance (self-reported)	423,992 European ancestry individuals	NA	8q23.3	TRPS1	rs2721929-G	0.44178	2E-9		0.97413635	NR	Affymetrix [~ 9600000] (imputed)	N
1474	chr8	116614542	116614543	rs2737207	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	8q23.3	TRPS1	rs2737207-C	0.448616	2E-11		0.0126001	[0.0089-0.0163] unit increase	NR [13737936] (imputed)	N
1474	chr8	116620303	116620304	rs2721932	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	8q23.3		rs2721932-?	NR	6E-10		0.0128058	[0.0087-0.0169] unit increase	Affymetrix [20259828] (imputed)	N
1474	chr8	116621213	116621214	rs2737212	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Low tan response	46,768 European ancestry low tanning cases, 74,528 European ancestry moderate and high tanning controls	15,547 European ancestry low tanning  cases, 39,835 European moderate and high tanning ancestry controls	8q23.3	TRPS1	rs2737212-C	NR	4E-25		0.09	[0.035-0.145] unit increase	Affymetrix [8351141] (imputed)	N
1474	chr8	116622905	116622906	rs2245019	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	8q23.3		rs2245019-C	0.42	2E-8		5.65	z score increase	Affymetrix [9061022] (imputed)	N
1474	chr8	116623547	116623548	rs62512210	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	8q23.3	TRPS1	rs62512210-T	0.9142	2E-13		0.004	[0.003-0.005] unit decrease	Affymetrix [15275733] (imputed)	N
1474	chr8	116624878	116624879	rs2245221	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in HDL	115,082 European ancestry individuals	NA	8q23.3		rs2245221-G	0.441032	1E-19		0.0340604	[0.027-0.041] unit decrease	NR [11722792] (imputed)	N
1474	chr8	116624878	116624879	rs2245221	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of apolipoprotein B to apolipoprotein A1 levels	115,082 European ancestry individuals	NA	8q23.3		rs2245221-G	0.441032	3E-11		0.0274893	[0.019-0.036] unit increase	NR [11722792] (imputed)	N
1474	chr8	116624878	116624879	rs2245221	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	HDL cholesterol levels	115,082 European ancestry individuals	NA	8q23.3		rs2245221-G	0.441032	9E-17		0.0311264	[0.024-0.038] unit decrease	NR [11722792] (imputed)	N
1474	chr8	116624878	116624879	rs2245221	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	8q23.3		rs2245221-G	0.441032	5E-13		0.0268686	[0.02-0.034] unit decrease	NR [11722792] (imputed)	N
1474	chr8	116624878	116624879	rs2245221	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	8q23.3		rs2245221-G	0.441032	8E-19		0.03372	[0.026-0.041] unit decrease	NR [11722792] (imputed)	N
1474	chr8	116624878	116624879	rs2245221	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in HDL	115,082 European ancestry individuals	NA	8q23.3		rs2245221-G	0.441032	7E-18		0.0319446	[0.025-0.039] unit decrease	NR [11722792] (imputed)	N
1474	chr8	116624878	116624879	rs2245221	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium HDL particles	115,082 European ancestry individuals	NA	8q23.3		rs2245221-G	0.441032	4E-19		0.0344068	[0.027-0.042] unit decrease	NR [11722792] (imputed)	N
1474	chr8	116624878	116624879	rs2245221	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of HDL particles	115,082 European ancestry individuals	NA	8q23.3		rs2245221-G	0.441032	2E-14		0.0301986	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
1474	chr8	116624878	116624879	rs2245221	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium HDL	115,082 European ancestry individuals	NA	8q23.3		rs2245221-G	0.441032	5E-17		0.0324791	[0.025-0.04] unit decrease	NR [11722792] (imputed)	N
1474	chr8	116624878	116624879	rs2245221	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	8q23.3		rs2245221-G	0.441032	4E-16		0.0305848	[0.023-0.038] unit decrease	NR [11722792] (imputed)	N
1474	chr8	116624878	116624879	rs2245221	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	8q23.3		rs2245221-G	0.441032	1E-17		0.0328816	[0.025-0.04] unit decrease	NR [11722792] (imputed)	N
1474	chr8	116624878	116624879	rs2245221	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein A1 levels	115,082 European ancestry individuals	NA	8q23.3		rs2245221-G	0.441032	1E-19		0.0346909	[0.027-0.042] unit decrease	NR [11722792] (imputed)	N
1474	chr8	116624878	116624879	rs2245221	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 48)	3,566 European ancestry individuals	4,680 European ancestry individuals	8q23.3		rs2245221-G	0.431779176	2E-8				Illumina [7417619] (imputed)	N
1474	chr8	116624986	116624987	rs2737214	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large HDL	115,082 European ancestry individuals	NA	8q23.3		rs2737214-C	0.441482	2E-13		0.0294258	[0.022-0.037] unit decrease	NR [11722792] (imputed)	N
1474	chr8	116624986	116624987	rs2737214	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium HDL	115,082 European ancestry individuals	NA	8q23.3		rs2737214-C	0.441482	2E-18		0.0341623	[0.027-0.042] unit decrease	NR [11722792] (imputed)	N
1474	chr8	116624986	116624987	rs2737214	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total concentration of lipoprotein particles	115,082 European ancestry individuals	NA	8q23.3		rs2737214-C	0.441482	2E-12		0.0277841	[0.02-0.036] unit decrease	NR [11722792] (imputed)	N
1474	chr8	116624986	116624987	rs2737214	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholines levels	115,006 European ancestry individuals	NA	8q23.3		rs2737214-C	0.441471	6E-10		0.0244069	[0.017-0.032] unit decrease	NR [11722792] (imputed)	N
1474	chr8	116624986	116624987	rs2737214	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium HDL	115,082 European ancestry individuals	NA	8q23.3		rs2737214-C	0.441482	1E-17		0.0335285	[0.026-0.041] unit decrease	NR [11722792] (imputed)	N
1474	chr8	116624986	116624987	rs2737214	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in HDL	115,082 European ancestry individuals	NA	8q23.3		rs2737214-C	0.441482	2E-19		0.03417	[0.027-0.042] unit decrease	NR [11722792] (imputed)	N
1474	chr8	116624986	116624987	rs2737214	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphoglycerides levels	115,006 European ancestry individuals	NA	8q23.3		rs2737214-C	0.441471	2E-10		0.0251509	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
1474	chr8	116624986	116624987	rs2737214	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphatidylcholine levels	115,006 European ancestry individuals	NA	8q23.3		rs2737214-C	0.441471	3E-11		0.0260857	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
1474	chr8	116624986	116624987	rs2737214	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small HDL	115,082 European ancestry individuals	NA	8q23.3		rs2737214-C	0.441482	2E-8		0.0231985	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
1474	chr8	116628402	116628403	rs2721934	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Squamous cell carcinoma	9,674 European ancestry cases, 625,657 European ancestry controls	NA	8q23.3	TRPS1	rs2721934-C	NR	2E-6		1.0752687	[1.04-1.11]	Affymetrix, Illumina [up to 9061544] (imputed)	N
1474	chr8	116628402	116628403	rs2721934	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Keratinocyte cancer (MTAG)	at least 18,538 European ancestry cases, at least 340,302 European ancestry controls	NA	8q23.3	TRPS1	rs2721934-C	NR	1E-6		1.0416667	[1.02-1.06]	Affymetrix [7600000] (imputed)	N
1474	chr8	116630078	116630079	rs2737216	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	8q23.3	TRPS1	rs2737216-T	NR	4E-6				Affymetrix, Illumina [NR] (imputed)	N
1474	chr8	116630078	116630079	rs2737216	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	8q23.3	TRPS1	rs2737216-T	NR	2E-31				Affymetrix, Illumina [NR] (imputed)	N
1474	chr8	116630078	116630079	rs2737216	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	8q23.3	TRPS1	rs2737216-T	NR	2E-20	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1474	chr8	116630078	116630079	rs2737216	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	8q23.3	TRPS1	rs2737216-T	NR	2E-13	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
1474	chr8	116630078	116630079	rs2737216	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	8q23.3	TRPS1	rs2737216-T	NR	4E-32				Affymetrix, Illumina [NR] (imputed)	N
1474	chr8	116630078	116630079	rs2737216	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	8q23.3	TRPS1	rs2737216-T	NR	4E-12	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
1474	chr8	116630078	116630079	rs2737216	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	8q23.3	TRPS1	rs2737216-T	NR	2E-20	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1474	chr8	116630078	116630079	rs2737216	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	8q23.3	TRPS1	rs2737216-T	NR	6E-21		0.008	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1474	chr8	116630078	116630079	rs2737216	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	8q23.3	TRPS1	rs2737216-T	NR	2E-11	(EA)	0.008	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1474	chr8	116630078	116630079	rs2737216	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	8q23.3	TRPS1	rs2737216-T	NR	1E-12	(Asian)	0.012	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1474	chr8	116630078	116630079	rs2737216	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	8q23.3	TRPS1	rs2737216-T	NR	3E-11	(Asian)	0.01048	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1474	chr8	116630078	116630079	rs2737216	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	8q23.3	TRPS1	rs2737216-T	NR	2E-12		0.007329	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1474	chr8	116630310	116630311	rs2737217	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Sunburns	approximately 344,000 European ancestry individuals	NA	8q23.3		rs2737217-?	NR	9E-33				NR [~ 8900000] (imputed)	N
1474	chr8	116630836	116630837	rs139427417	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	8q23.3	TRPS1	rs139427417-C	0.991141	1E-10		0.0625796	[0.044-0.082] unit increase	NR [13737936] (imputed)	N
1474	chr8	116631277	116631278	rs2737218	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	8q23.3		rs2737218-C	0.350833777	2E-12		0.06831973	[0.049-0.087] unit decrease	Illumina [13429980] (imputed)	N
1474	chr8	116631277	116631278	rs2737218	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	8q23.3	NR	rs2737218-?	NR	2E-9		0.16399	[0.11-0.22] unit decrease	Affymetrix [7794483] (imputed)	N
1474	chr8	116631277	116631278	rs2737218	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	8q23.3	NR	rs2737218-?	NR	2E-6	(female)	0.14217	[0.084-0.2] unit decrease	Affymetrix [7794483] (imputed)	N
1474	chr8	116632818	116632819	rs2721936	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Basal cell carcinoma	31,787 European ancestry cases, 619,351 European ancestry controls	NA	8q23.3	TRPS1	rs2721936-A	0.415491	2E-9		1.05	[1.04-1.07]	Affymetrix, Illumina [up to 9061544] (imputed)	N
1474	chr8	116633698	116633699	rs2721937	22472876	Sullivan PF	2012-04-03	Mol Psychiatry	A mega-analysis of genome-wide association studies for major depressive disorder.	Major depressive disorder	9,240 European ancestry cases, 9,519 European ancestry controls	6,783 European ancestry cases, 50,695 European ancestry controls	8q23.3	TRPS1	rs2721937-?	NR	8E-6				Affymetrix, Illumina, Perlegen [~ 1200000] (imputed)	N
1474	chr8	116633905	116633906	rs2009382	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	8q23.3	NR	rs2009382-?		2E-9				NR [7428630] (imputed)	N
1474	chr8	116635610	116635611	rs2721938	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	8q23.3		rs2721938-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1474	chr8	116635687	116635688	rs2737219	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	8q23.3	NR	rs2737219-A	NR	2E-8		5.601	z score increase	Affymetrix [10847151] (imputed)	N
1474	chr8	116636280	116636281	rs2721940	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	8q23.3		rs2721940-C	NR	2E-32		0.016	[0.013-0.019] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1474	chr8	116636280	116636281	rs2721940	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	8q23.3		rs2721940-?	NR	2E-34				NR [~ 8900000] (imputed)	N
1474	chr8	116636718	116636719	rs2142331	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	8q23.3	TRPS1	rs2142331-T	0.6023	1E-17		0.0165	[0.013-0.02] unit decrease	Affymetrix [18391927] (imputed)	N
1474	chr8	116638636	116638637	rs74335301	27402877	Hill-Burns EM	2016-07-11	Hum Mol Genet	Identification of genetic modifiers of age-at-onset for familial Parkinson's disease.	Parkinson's disease (familial, age at onset)	431 European ancestry cases	737 European ancestry cases	8q23.3	TRPS1	rs74335301-?		3E-6		2.2	[NR]	Illumina [7200000] (imputed)	N
1474	chr8	116639473	116639474	rs2737226	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	8q23.3		rs2737226-C	NR	3E-20		0.016	[0.013-0.019] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1474	chr8	116639473	116639474	rs2737226	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	8q23.3	NR	rs2737226-C	0.6114	3E-16		0.0383	[0.029-0.048] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
1474	chr8	116648088	116648089	rs2721953	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	8q23.3	NR	rs2721953-G	0.706934	7E-15		0.0165963	[0.012-0.021] unit increase	NR [NR]	N
1474	chr8	116648088	116648089	rs2721953	30670697	Kilpelainen TO	2019-01-22	Nat Commun	Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity.	LDL cholesterol x physical activity interaction (2df test)	7,260 African American inactive individuals, 12,761 African American active individuals, 2,740 Asian ancestry inactive individuals, 3,615 Asian ancestry active individuals, 22,378 European ancestry inactive individuals, 55,310 European ancestry active individuals, 2,163 Hispanic or Latin American inactive individuals, 3,461 Hispanic or Latin American active individuals	571 African American inactive individuals, 1,521 African American active individuals, 1,217 South African Black ancestry inactive individuals, 389 South African Black ancestry active individuals, 2,495 East Asian ancestry inactive individuals, 1,947 East Asian ancestry active individuals,  724 South Asian ancestry inactive individuals, 1,425 South Asian ancestry active individuals,  33,796 European ancestry inactive individuals, 50,812 European ancestry active individuals, 2,578 Hispanic inactive individuals, 8,661 Hispanic active individuals	8q23.3	NR	rs2721953-A	0.3651	6E-14				Affymetrix, Illumina [at least 2500000] (imputed)	N
1474	chr8	116648564	116648565	rs2737229	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	Cholesterol, total	100,184 European ancestry individuals	NA	8q23.3	TRPS1	rs2737229-C	0.3	2E-8		1.11	[0.7-1.52] mg/dL decrease	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1475	chr8	116655077	116655078	rs55780214	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycoprotein acetyls levels	115,082 European ancestry individuals	NA	8q23.3		rs55780214-T	0.712316	2E-12		0.0319041	[0.023-0.041] unit increase	NR [11722792] (imputed)	N
1475	chr8	116655077	116655078	rs55780214	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	8q23.3		rs55780214-A	NR	3E-19		0.0229	[0.018-0.028] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
1475	chr8	116657234	116657235	rs2737240	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	8q23.3	NR	rs2737240-A	0.7076	3E-8		1.037	[1.02-1.05]	Affymetrix, Illumina [NR] (imputed)	N
1475	chr8	116657910	116657911	rs2721961	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very small VLDL	115,082 European ancestry individuals	NA	8q23.3		rs2721961-T	0.71917	2E-11		0.0299202	[0.021-0.039] unit increase	NR [11722792] (imputed)	N
1475	chr8	116657910	116657911	rs2721961	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in IDL	115,082 European ancestry individuals	NA	8q23.3		rs2721961-T	0.71917	8E-12		0.0306676	[0.022-0.039] unit increase	NR [11722792] (imputed)	N
1475	chr8	116657910	116657911	rs2721961	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in VLDL	115,082 European ancestry individuals	NA	8q23.3		rs2721961-T	0.71917	1E-8		0.0255476	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
1475	chr8	116657910	116657911	rs2721961	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total fatty acid levels	115,006 European ancestry individuals	NA	8q23.3		rs2721961-T	0.719164	8E-10		0.0278844	[0.019-0.037] unit increase	NR [11722792] (imputed)	N
1475	chr8	116657910	116657911	rs2721961	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in VLDL	115,082 European ancestry individuals	NA	8q23.3		rs2721961-T	0.71917	5E-10		0.0282196	[0.019-0.037] unit increase	NR [11722792] (imputed)	N
1475	chr8	116657910	116657911	rs2721961	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Monounsaturated fatty acid levels	115,006 European ancestry individuals	NA	8q23.3		rs2721961-T	0.719164	1E-8		0.0258897	[0.017-0.035] unit increase	NR [11722792] (imputed)	N
1475	chr8	116657910	116657911	rs2721961	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small VLDL particles	115,082 European ancestry individuals	NA	8q23.3		rs2721961-T	0.71917	1E-10		0.0292319	[0.02-0.038] unit increase	NR [11722792] (imputed)	N
1475	chr8	116657910	116657911	rs2721961	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	8q23.3		rs2721961-T	0.71917	5E-8		0.0245127	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
1475	chr8	116657910	116657911	rs2721961	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls, 33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	8q23.3		rs2721961-G	NR	5E-19		0.048	[0.037-0.059] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1475	chr8	116658582	116658583	rs2737245	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large LDL	115,082 European ancestry individuals	NA	8q23.3		rs2737245-G	0.721398	4E-9		0.0265959	[0.018-0.035] unit increase	NR [11722792] (imputed)	N
1475	chr8	116658582	116658583	rs2737245	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in LDL	115,082 European ancestry individuals	NA	8q23.3		rs2737245-G	0.721398	7E-9		0.0260969	[0.017-0.035] unit increase	NR [11722792] (imputed)	N
1475	chr8	116658582	116658583	rs2737245	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very small VLDL	115,082 European ancestry individuals	NA	8q23.3		rs2737245-G	0.721398	2E-15		0.0358172	[0.027-0.045] unit increase	NR [11722792] (imputed)	N
1475	chr8	116658582	116658583	rs2737245	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very small VLDL	115,082 European ancestry individuals	NA	8q23.3		rs2737245-G	0.721398	5E-16		0.0366687	[0.028-0.046] unit increase	NR [11722792] (imputed)	N
1475	chr8	116658582	116658583	rs2737245	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	8q23.3		rs2737245-G	0.721398	3E-15		0.035617	[0.027-0.044] unit increase	NR [11722792] (imputed)	N
1475	chr8	116658582	116658583	rs2737245	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very small VLDL particles	115,082 European ancestry individuals	NA	8q23.3		rs2737245-G	0.721398	8E-15		0.0352471	[0.026-0.044] unit increase	NR [11722792] (imputed)	N
1475	chr8	116658582	116658583	rs2737245	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very small VLDL	115,082 European ancestry individuals	NA	8q23.3		rs2737245-G	0.721398	3E-11		0.0295972	[0.021-0.038] unit increase	NR [11722792] (imputed)	N
1475	chr8	116658582	116658583	rs2737245	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	8q23.3		rs2737245-G	0.721398	1E-12		0.0317659	[0.023-0.041] unit increase	NR [11722792] (imputed)	N
1475	chr8	116658582	116658583	rs2737245	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Total cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	8q23.3	TRPS1	rs2737245-?		4E-13		0.0281	[0.02-0.036] unit increase	Illumina [31500000] (imputed)	N
1475	chr8	116658582	116658583	rs2737245	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Low density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	8q23.3	TRPS1	rs2737245-?		2E-11		0.0309	[0.022-0.04] unit increase	Illumina [31500000] (imputed)	N
1475	chr8	116658582	116658583	rs2737245	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	8q23.3	TRPS1	rs2737245-T	0.280163	3E-39		0.032696746	[0.028-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
1475	chr8	116658582	116658583	rs2737245	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	8q23.3	TRPS1	rs2737245-T	0.280149	2E-30		0.028539117	[0.024-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
1475	chr8	116658582	116658583	rs2737245	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	8q23.3	TRPS1	rs2737245-T	0.280195	3E-50		0.03708354	[0.032-0.042] unit decrease	Affymetrix [93095623] (imputed)	N
1475	chr8	116658582	116658583	rs2737245	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	8q23.3	TRPS1	rs2737245-?	NR	5E-30		0.0324	[0.027-0.037] unit decrease	Affymetrix [5701386] (imputed)	N
1475	chr8	116658582	116658583	rs2737245	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls	NA	8q23.3	TRPS1	rs2737245-T	0.278192	4E-10		0.039369803	[0.027-0.052] unit decrease	Affymetrix [7288503] (imputed)	N
1475	chr8	116658582	116658583	rs2737245	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	8q23.3		rs2737245-T	0.2779	3E-14		0.018	[0.014-0.022] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
1475	chr8	116658582	116658583	rs2737245	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	8q23.3	TRPS1	rs2737245-T	0.2748	3E-17		1.0327		Affymetrix [11880941] (imputed)	N
1475	chr8	116658582	116658583	rs2737245	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	8q23.3	TRPS1	rs2737245-T	0.2748	3E-17		1.0340674		Affymetrix [11880941] (imputed)	N
1475	chr8	116659232	116659236	rs138835319	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	8q23.3		rs138835319-T	NR	2E-29		0.0245	[0.02-0.029] unit decrease	Affymetrix, Illumina [20536134] (imputed)	N
1475	chr8	116659232	116659236	rs138835319	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	8q23.3		rs138835319-T	NR	2E-22		0.0231	[0.018-0.028] unit decrease	Affymetrix, Illumina [20521447] (imputed)	N
1475	chr8	116659730	116659731	rs17716502	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		8q23.3	TRPS1	rs17716502-C	0.795594	3E-21		0.0162355	[0.013-0.02] unit increase	Affymetrix [12370749]	N
1475	chr8	116659730	116659731	rs17716502	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	8q23.3	Intergenic	rs17716502-T	0.1932	1E-8	(MTAG)	0.013	[0.0085-0.0175] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1475	chr8	116659730	116659731	rs17716502	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	8q23.3	Intergenic	rs17716502-C	0.8068	9E-9		0.0142	[0.0093-0.0191] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1475	chr8	116662037	116662038	rs2721965	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	8q23.3	NA	rs2721965-A	0.6689	4E-21		0.017	[0.013-0.021] unit increase	NR [~ 27400000] (imputed)	N
1475	chr8	116663897	116663898	rs2737252	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	8q23.3	TRPS1	rs2737252-A	0.281525	3E-14		0.018691203	[0.014-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1475	chr8	116663897	116663898	rs2737252	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	8q23.3	TRPS1	rs2737252-A	0.281496	2E-57		0.03961222	[0.035-0.044] unit decrease	Affymetrix [93095623] (imputed)	N
1475	chr8	116663897	116663898	rs2737252	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	8q23.3	TRPS1	rs2737252-G	0.715006	1E-65		0.0353684	[0.031-0.039] unit decrease	NR [13737936] (imputed)	N
1475	chr8	116663897	116663898	rs2737252	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	8q23.3		rs2737252-?	NR	3E-81				NR [~ 8900000] (imputed)	N
1475	chr8	116663897	116663898	rs2737252	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	8q23.3		rs2737252-?	NR	3E-65		0.0381406	[0.034-0.043] unit decrease	Affymetrix [20259828] (imputed)	N
1475	chr8	116663897	116663898	rs2737252	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q23.3	NR	rs2737252-G	NR	3E-12		0.033	unit increase	Affymetrix [at least 7091467] (imputed)	N
1475	chr8	116663897	116663898	rs2737252	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q23.3	NR	rs2737252-G	0.734	7E-11	(EA)	0.034	unit increase	Affymetrix [at least 7091467] (imputed)	N
1475	chr8	116663897	116663898	rs2737252	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q23.3	NR	rs2737252-G	NR	5E-11		0.031	unit increase	Affymetrix [at least 7091467] (imputed)	N
1475	chr8	116663897	116663898	rs2737252	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q23.3	NR	rs2737252-G	0.734	2E-10	(EA)	0.034	unit increase	Affymetrix [at least 7091467] (imputed)	N
1475	chr8	116663897	116663898	rs2737252	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Total cholesterol levels	128,305 Japanese ancestry individuals	NA	8q23.3	TRPS1	rs2737252-?	NR	1E-9		0.02657	[0.018-0.035] unit decrease novel	Illumina [6108953] (imputed)	N
1475	chr8	116663897	116663898	rs2737252	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	8q23.3	TRPS1	rs2737252-G	0.720315	2E-15	(women)	0.0423462	[0.032-0.052] unit decrease	NR [17166351] (imputed)	N
1475	chr8	116663897	116663898	rs2737252	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	8q23.3	TRPS1	rs2737252-G	0.718896	2E-23		0.0378528	[0.031-0.045] unit decrease	NR [17166351] (imputed)	N
1475	chr8	116663897	116663898	rs2737252	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	8q23.3	TRPS1	rs2737252-G	0.717271	5E-9	(men)	0.0326848	[0.022-0.044] unit decrease	NR [17166351] (imputed)	N
1475	chr8	116667538	116667539	rs2737263	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	8q23.3	TRPS1	rs2737263-T	0.281489	3E-54		0.038701084	[0.034-0.044] unit decrease	Affymetrix [93095623] (imputed)	N
1475	chr8	116667538	116667539	rs2737263	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	8q23.3	TRPS1	rs2737263-T	0.281571	1E-11		0.016643543	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1475	chr8	116667538	116667539	rs2737263	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	8q23.3	TRPS1	rs2737263-T	0.28155	7E-14		0.018424653	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1475	chr8	116667538	116667539	rs2737263	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	8q23.3	TRPS1	rs2737263-G	0.719746	8E-16		0.0186563	[0.014-0.023] unit increase	Affymetrix [NR] (imputed)	N
1475	chr8	116667633	116667634	rs2737265	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	8q23.3	TRPS1	rs2737265-A	0.719539	2E-18		0.0203604	[0.016-0.025] unit increase	Affymetrix [NR] (imputed)	N
1475	chr8	116667633	116667634	rs2737265	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	8q23.3	TRPS1	rs2737265-A	0.7419	3E-9		0.0183	[0.012-0.024] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1475	chr8	116667633	116667634	rs2737265	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	8q23.3		rs2737265-?	NR	2E-65		0.0381349	[0.034-0.043] unit decrease	Affymetrix [20259828] (imputed)	N
1475	chr8	116667633	116667634	rs2737265	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	8q23.3	TRPS1	rs2737265-G	0.2824	3E-14		0.03029951	[0.022-0.038] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1475	chr8	116667633	116667634	rs2737265	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	8q23.3	TRPS1	rs2737265-G	0.2823	7E-11		0.02604103	[0.018-0.034] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1475	chr8	116667633	116667634	rs2737265	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	8q23.3	TRPS1	rs2737265-G	0.2824	9E-24		0.03976134	[0.032-0.048] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1475	chr8	116667633	116667634	rs2737265	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	8q23.3	TRPS1	rs2737265-G	0.2824	3E-24		0.04060887	[0.033-0.048] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1475	chr8	116667633	116667634	rs2737265	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	8q23.3	TRPS1	rs2737265-G	0.2824	1E-21		0.03816234	[0.03-0.046] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1475	chr8	116670346	116670347	rs3808477	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	8q23.3		rs3808477-T	NR	1E-8		0.0127	[0.0084-0.017] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
1475	chr8	116670346	116670347	rs3808477	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	135,808 East Asian ancestry individuals	NA	8q23.3		rs3808477-T	0.268678	3E-10		0.0253181	[0.017-0.033] unit decrease	Illumina [13476599] (imputed)	N
1475	chr8	116670346	116670347	rs3808477	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	8q23.3		rs3808477-T	NR	3E-16		0.0172	[0.013-0.021] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1475	chr8	116670346	116670347	rs3808477	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	8q23.3	TRPS1	rs3808477-C	0.720705	2E-9		0.0132057	[0.0089-0.0175] unit increase	Affymetrix [NR] (imputed)	N
1475	chr8	116670346	116670347	rs3808477	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	8q23.3	NA	rs3808477-T	0.274	9E-22		0.0182	[0.014-0.022] unit decrease	NR [~ 27400000] (imputed)	N
1475	chr8	116671847	116671848	rs4876611	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	VLDL cholesterol levels	115,082 European ancestry individuals	NA	8q23.3		rs4876611-A	0.279224	1E-11		0.0311109	[0.022-0.04] unit decrease	NR [11722792] (imputed)	N
1475	chr8	116671847	116671848	rs4876611	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small VLDL	115,082 European ancestry individuals	NA	8q23.3		rs4876611-A	0.279224	6E-11		0.0296945	[0.021-0.039] unit decrease	NR [11722792] (imputed)	N
1475	chr8	116671847	116671848	rs4876611	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium VLDL	115,082 European ancestry individuals	NA	8q23.3		rs4876611-A	0.279224	3E-9		0.0269763	[0.018-0.036] unit decrease	NR [11722792] (imputed)	N
1475	chr8	116671847	116671848	rs4876611	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	8q23.3		rs4876611-A	0.279224	2E-8		0.0252493	[0.016-0.034] unit decrease	NR [11722792] (imputed)	N
1475	chr8	116671847	116671848	rs4876611	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total free cholesterol levels	115,082 European ancestry individuals	NA	8q23.3		rs4876611-A	0.279224	2E-8		0.0253462	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
1475	chr8	116671847	116671848	rs4876611	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Remnant cholesterol (non-HDL, non-LDL -cholesterol)	115,082 European ancestry individuals	NA	8q23.3		rs4876611-A	0.279224	6E-10		0.0282694	[0.019-0.037] unit decrease	NR [11722792] (imputed)	N
1475	chr8	116671847	116671848	rs4876611	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Polyunsaturated fatty acid levels	115,006 European ancestry individuals	NA	8q23.3		rs4876611-A	0.279226	6E-11		0.0292036	[0.02-0.038] unit decrease	NR [11722792] (imputed)	N
1475	chr8	116671847	116671848	rs4876611	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	8q23.3		rs4876611-A	0.279236	9E-10		0.0282522	[0.019-0.037] unit decrease	NR [11722792] (imputed)	N
1475	chr8	116671847	116671848	rs4876611	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small VLDL	115,082 European ancestry individuals	NA	8q23.3		rs4876611-A	0.279224	8E-12		0.0313111	[0.022-0.04] unit decrease	NR [11722792] (imputed)	N
1475	chr8	116671847	116671848	rs4876611	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium VLDL	115,082 European ancestry individuals	NA	8q23.3		rs4876611-A	0.279224	3E-10		0.0290319	[0.02-0.038] unit decrease	NR [11722792] (imputed)	N
1475	chr8	116671847	116671848	rs4876611	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in IDL	115,082 European ancestry individuals	NA	8q23.3		rs4876611-A	0.279224	6E-9		0.02585	[0.017-0.035] unit decrease	NR [11722792] (imputed)	N
1475	chr8	116671847	116671848	rs4876611	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-6 fatty acid levels	115,006 European ancestry individuals	NA	8q23.3		rs4876611-A	0.279226	5E-10		0.0278828	[0.019-0.037] unit decrease	NR [11722792] (imputed)	N
1475	chr8	116671847	116671848	rs4876611	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	8q23.3		rs4876611-A	0.279224	3E-11		0.0306488	[0.022-0.04] unit decrease	NR [11722792] (imputed)	N
1475	chr8	116671847	116671848	rs4876611	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	8q23.3		rs4876611-A	0.279224	5E-11		0.0301524	[0.021-0.039] unit decrease	NR [11722792] (imputed)	N
1475	chr8	116671847	116671848	rs4876611	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in VLDL	115,082 European ancestry individuals	NA	8q23.3		rs4876611-A	0.279224	1E-10		0.0294341	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
1475	chr8	116671847	116671848	rs4876611	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small LDL particles	115,082 European ancestry individuals	NA	8q23.3		rs4876611-A	0.279224	2E-9		0.0274914	[0.018-0.037] unit decrease	NR [11722792] (imputed)	N
1475	chr8	116671847	116671848	rs4876611	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium VLDL particles	115,082 European ancestry individuals	NA	8q23.3		rs4876611-A	0.279224	6E-10		0.0283724	[0.019-0.037] unit decrease	NR [11722792] (imputed)	N
1475	chr8	116671847	116671848	rs4876611	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium LDL particles	115,082 European ancestry individuals	NA	8q23.3		rs4876611-A	0.279224	4E-8		0.0254416	[0.016-0.034] unit decrease	NR [11722792] (imputed)	N
1475	chr8	116671847	116671848	rs4876611	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large LDL particles	115,082 European ancestry individuals	NA	8q23.3		rs4876611-A	0.279224	9E-9		0.0263639	[0.017-0.035] unit decrease	NR [11722792] (imputed)	N
1475	chr8	116671847	116671848	rs4876611	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of VLDL particles	115,082 European ancestry individuals	NA	8q23.3		rs4876611-A	0.279224	9E-12		0.0311239	[0.022-0.04] unit decrease	NR [11722792] (imputed)	N
1475	chr8	116671847	116671848	rs4876611	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of LDL particles	115,082 European ancestry individuals	NA	8q23.3		rs4876611-A	0.279224	4E-9		0.026982	[0.018-0.036] unit decrease	NR [11722792] (imputed)	N
1475	chr8	116671847	116671848	rs4876611	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of IDL particles	115,082 European ancestry individuals	NA	8q23.3		rs4876611-A	0.279224	3E-8		0.0251218	[0.016-0.034] unit decrease	NR [11722792] (imputed)	N
1475	chr8	116671847	116671848	rs4876611	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large VLDL	115,082 European ancestry individuals	NA	8q23.3		rs4876611-A	0.279224	3E-8		0.025086	[0.016-0.034] unit decrease	NR [11722792] (imputed)	N
1475	chr8	116671847	116671848	rs4876611	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small VLDL	115,082 European ancestry individuals	NA	8q23.3		rs4876611-A	0.279224	6E-12		0.0315429	[0.023-0.041] unit decrease	NR [11722792] (imputed)	N
1475	chr8	116671847	116671848	rs4876611	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium VLDL	115,082 European ancestry individuals	NA	8q23.3		rs4876611-A	0.279224	8E-9		0.0262762	[0.017-0.035] unit decrease	NR [11722792] (imputed)	N
1475	chr8	116671847	116671848	rs4876611	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large VLDL	115,082 European ancestry individuals	NA	8q23.3		rs4876611-A	0.279224	2E-9		0.0273791	[0.018-0.036] unit decrease	NR [11722792] (imputed)	N
1475	chr8	116671847	116671848	rs4876611	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in VLDL	115,082 European ancestry individuals	NA	8q23.3		rs4876611-A	0.279224	6E-12		0.0316197	[0.023-0.041] unit decrease	NR [11722792] (imputed)	N
1475	chr8	116671847	116671848	rs4876611	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	8q23.3		rs4876611-A	0.279224	7E-12		0.0314936	[0.022-0.04] unit decrease	NR [11722792] (imputed)	N
1475	chr8	116671847	116671848	rs4876611	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	8q23.3		rs4876611-A	0.279224	4E-10		0.0287217	[0.02-0.038] unit decrease	NR [11722792] (imputed)	N
1475	chr8	116671847	116671848	rs4876611	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein B levels	115,082 European ancestry individuals	NA	8q23.3		rs4876611-A	0.279224	1E-9		0.0280321	[0.019-0.037] unit decrease	NR [11722792] (imputed)	N
1475	chr8	116671847	116671848	rs4876611	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Triglycerides	429,011 European ancestry individuals	NA	8q23.3		rs4876611-G	0.72	6E-10		0.014	mmol/L increase	NR [NR] (imputed)	N
1475	chr8	116671847	116671848	rs4876611	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	8q23.3		rs4876611-G	0.72	3E-27				NR [NR] (imputed)	N
1475	chr8	116671847	116671848	rs4876611	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	8q23.3		rs4876611-G	0.72	7E-28		0.018	% increase	NR [NR] (imputed)	N
1475	chr8	116671847	116671848	rs4876611	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	8q23.3	NR	rs4876611-?	NR	1E-21				Affymetrix [~ 8270000] (imputed)	N
1475	chr8	116679546	116679547	rs13277568	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	8q23.3	NR	rs13277568-G	NR	5E-16		0.0201	[0.015-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
1475	chr8	116679546	116679547	rs13277568	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	8q23.3	NR	rs13277568-G	NR	2E-17		0.0211	[0.016-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
1475	chr8	116679546	116679547	rs13277568	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	8q23.3	NR	rs13277568-G	NR	1E-16		0.0206	[0.016-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
1475	chr8	116679546	116679547	rs13277568	32424353	Zhang H	2020-05-18	Nat Genet	Genome-wide association study identifies 32 novel breast cancer susceptibility loci from overall and subtype-specific analyses.	Breast cancer	133,384 European ancestry cases, 113,789 European ancestry controls	NA	8q23.3	NR	rs13277568-A	0.63	2E-8		1.0309278	[1.02-1.05]	Illumina [~ 10800000] (imputed)	N
1475	chr8	116679546	116679547	rs13277568	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	8q23.3	NR	rs13277568-G	0.3696	8E-7	(EA)	0.0327	[0.02-0.046] unit decrease	Illumina [~ 11800000] (imputed)	N
1475	chr8	116686751	116686752	rs13280592	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	8q23.3		rs13280592-G	NR	2E-8		0.0384	[0.025-0.052] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1475	chr8	116686751	116686752	rs13280592	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	8q23.3	TRPS1	rs13280592-C	0.273087	9E-9		0.0134073	[0.0088-0.018] unit increase	NR [16516521] (imputed)	N
1475	chr8	116686751	116686752	rs13280592	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	8q23.3	TRPS1	rs13280592-C	0.270034	2E-8		0.038423017	[0.025-0.052] unit decrease	Affymetrix [7288503] (imputed)	N
1475	chr8	116701129	116701130	rs12682033	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	8q23.3		rs12682033-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1475	chr8	116713794	116713795	rs11337200	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 2)	4,680 European ancestry individuals	3,566 European ancestry individuals	8q23.3		rs11337200-AT	0.224012359	7E-13				Illumina [7417619] (imputed)	N
1475	chr8	116718619	116718620	rs2960151	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	8q23.3	NA	rs2960151-A	0.7639	2E-20		0.0208	[0.016-0.025] unit increase	NR [~ 27400000] (imputed)	N
1475	chr8	116719897	116719898	rs800534	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	8q23.3		rs800534-?	NR	4E-12				NR [~ 8900000] (imputed)	N
1475	chr8	116750547	116750548	rs2694047	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	8q23.3		rs2694047-?	NR	1E-21				NR [~ 8900000] (imputed)	N
1476	chr8	116799592	116799593	rs800512	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	8q23.3		rs800512-?	NR	2E-13				NR [~ 8900000] (imputed)	N
1476	chr8	116813904	116813905	rs800586	22491018	Wang J	2012-04-10	Pharmacogenomics J	Genome-wide association analysis implicates the involvement of eight loci with response to tocilizumab for the treatment of rheumatoid arthritis.	Response to tocilizumab in rheumatoid arthritis	1,157 European and other ancestry rheumatoid arthritis cases	526 European and other ancestry rheumatoid arthritis cases	8q23.3	intergenic	rs800586-?	0.38	2E-7	(CTJC , EA, RF-)	9.78	[NR] unit decrease	Illumina [534053]	N
1476	chr8	116824127	116824127	rs11395520	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	8q23.3		rs11395520-TA	NR	1E-8		0.0161	[0.011-0.022] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
1476	chr8	116825689	116825690	rs1474518	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	8q23.3	NR	rs1474518-C	0.2351	7E-10		0.01811734	[0.012-0.024] unit decrease	Affymetrix [10549349] (imputed)	N
1476	chr8	116826243	116826244	rs2736208	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	8q23.3	TRPS1, EIF3H	rs2736208-T	0.239	4E-16		1.035		Affymetrix [11880941] (imputed)	N
1476	chr8	116846038	116846039	rs13262459	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for LDL particles	115,082 European ancestry individuals	NA	8q23.3		rs13262459-T	0.796795	2E-9		0.0308035	[0.021-0.041] unit increase	NR [11722792] (imputed)	N
1476	chr8	116855600	116855601	rs541092898	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	8q23.3		rs541092898-?	NR	2E-10		0.120479	[0.081-0.16] unit increase	Affymetrix [20259828] (imputed)	N
1476	chr8	116891359	116891360	rs17740942	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	8q23.3	TRPS1	rs17740942-T	0.884739	5E-11		0.0200846	[0.014-0.026] unit decrease	Affymetrix [NR] (imputed)	N
1476	chr8	116891359	116891360	rs17740942	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	8q23.3	TRPS1	rs17740942-T	0.884802	1E-9		0.0192588	[0.013-0.025] unit decrease	Affymetrix [NR] (imputed)	N
1476	chr8	116903640	116903641	rs17717583	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	8q23.3		rs17717583-?	NR	1E-16				NR [~ 8900000] (imputed)	N
1477	chr8	116918263	116918264	rs142610219	30487263	Pollack S	2018-11-28	Diabetes	Multiethnic Genome-wide Association Study of Diabetic Retinopathy using Liability Threshold Modeling of Duration of Diabetes and Glycemic Control.	Diabetic retinopathy (moderate NPDR and PDR)	644 European ancestry cases, 1,970 European ancestry controls, 768 African American cases, 941 African American controls	2,388 East Asian ancestry cases, 6,219 East Asian ancestry controls, 1,658 European ancestry cases, 3,019 European ancestry controls, 1,014 Hispanic cases, 1,240 Hispanic controls	8q23.3	NR	rs142610219-?	NR	1E-6	(AA, adjusted for duration of diabetes and glycemic control)			Affymetrix, Illumina [NR] (imputed)	N
1477	chr8	116935810	116935811	rs6469613	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	8q23.3		rs6469613-A	NR	2E-11		0.0185	[0.013-0.024] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
1477	chr8	116952844	116952845	rs7827717	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Lateral occipital cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	8q23.3	NR	rs7827717-?		7E-6				Illumina [4322238] (imputed)	N
1477	chr8	116956809	116956810	rs5021979	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	8q23.3	intergenic	rs5021979-T	0.7046	4E-8		0.1203	[0.078-0.163] mmHg decrease	Affymetrix [NR] (imputed)	N
1477	chr8	116959519	116959520	rs932267	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	8q23.3	NR	rs932267-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
1477	chr8	116959836	116959837	rs2205260	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	8q23.3	LINC00536	rs2205260-A	0.168	2E-12		0.1627	[0.12-0.21] unit increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1477	chr8	116960728	116960729	rs7828742	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycine levels	114,978 European ancestry individuals	NA	8q23.3		rs7828742-A	0.400205	3E-9		0.0237131	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
1477	chr8	116960728	116960729	rs7828742	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	8q23.3		rs7828742-G	NR	9E-25		0.0225	[0.018-0.027] unit increase	Affymetrix, Illumina [20529698] (imputed)	N
1477	chr8	116960728	116960729	rs7828742	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	8q23.3	NR	rs7828742-G	0.596853	3E-28		0.02193	[0.018-0.026] unit decrease	Affymetrix [16668957] (imputed)	N
1477	chr8	116960728	116960729	rs7828742	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	8q23.3	NR	rs7828742-A	0.40021	3E-8		0.0167984	[0.011-0.023] unit increase	Affymetrix [16577313] (imputed)	N
1477	chr8	116960728	116960729	rs7828742	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	8q23.3	NR	rs7828742-A	0.400685	1E-20		0.00750701	[0.0058-0.0092] unit increase	Affymetrix [16582909] (imputed)	N
1477	chr8	116960728	116960729	rs7828742	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	8q23.3	NR	rs7828742-A	0.400685	3E-22		0.00878515	[0.0069-0.0107] unit increase	Affymetrix [16582965] (imputed)	N
1477	chr8	116969699	116969700	rs73375614	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	8q23.3	TRPS1	rs73375614-T	0.94403	2E-8		0.0242534	[0.016-0.033] unit decrease	Affymetrix [NR] (imputed)	N
1477	chr8	116974301	116974302	rs10095930	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	8q23.3	NR	rs10095930-C	0.417115	1E-15		0.00970943	[0.0072-0.0122] unit increase	Affymetrix [16585854] (imputed)	N
1477	chr8	116974301	116974302	rs10095930	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	8q23.3	NR	rs10095930-C	0.417115	2E-15		0.0108152	[0.008-0.0137] unit increase	Affymetrix [16585866] (imputed)	N
1477	chr8	116974301	116974302	rs10095930	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	8q23.3	NR	rs10095930-C	0.417542	2E-38		0.0266804	[0.023-0.031] unit decrease	NR [NR]	N
1477	chr8	116979465	116979466	rs72681825	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	8q23.3	NR	rs72681825-C	0.0443306	4E-14		0.0575832	[0.043-0.073] unit decrease	NR [19129689] (imputed)	N
1477	chr8	116979530	116979531	rs11784903	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	8q23.3	NR	rs11784903-C	0.52578	4E-8		0.0135555	[0.0086-0.0186] unit increase	Affymetrix [16585745] (imputed)	N
1477	chr8	116988526	116988527	rs12056768	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	8q23.3		rs12056768-?	NR	3E-29		0.0231961	[0.019-0.027] unit increase	NR [6912294] (imputed)	N
1477	chr8	116988526	116988527	rs12056768	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	417,580 European ancestry individuals	NA	8q23.3		rs12056768-T	0.417091	3E-29		0.022	[0.018-0.026] unit increase	NR [7250403] (imputed)	N
1477	chr8	116989834	116989835	rs6469615	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8q23.3	EIF3H	rs6469615-?	NR	7E-6	(PC 34:2)	0.21734114	[0.12-0.31] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1477	chr8	116997910	116997911	rs727993	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	8q23.3	NR	rs727993-A	0.431173	2E-20		0.029581	[0.023-0.036] unit increase	NR [19129689] (imputed)	N
1477	chr8	117007849	117007850	rs2064009	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	up to 92,771 European ancestry males, up to 113,387 European ancestry females	NA	8q23.3	TRPS1	rs2064009-C	0.42	2E-14		0.027	[0.019-0.035] unit decrease	Affymetrix, Illumina, Perlegen [2437193] (imputed)	N
1477	chr8	117011883	117011884	rs2205262	34308111	Amin HA	2021-01-07	BMJ Nutr Prev Health	No evidence that vitamin D is able to prevent or affect the severity of COVID-19 in individuals with European ancestry: a Mendelian randomisation study of open data.	Vitamin D insufficiency	35,079 European ancestry cases, 140,898 European ancestry controls	NA	8q23.3		rs2205262-C	0.429	5E-11		0.057	[0.039-0.075] unit decrease	Affymetrix [812428]	N
1477	chr8	117015141	117015142	rs6982226	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		8q23.3	NR	rs6982226-T	NR	1E-10		0.0406953	NR unit decrease	NR [NR] (imputed)	N
1478	chr8	117050494	117050495	rs12235002	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	8q23.3		rs12235002-?	NR	7E-16				NR [~ 8900000] (imputed)	N
1478	chr8	117055268	117055269	rs10156333	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	8q23.3		rs10156333-T	0.38268	1E-8		0.0238249	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
1478	chr8	117076314	117076315	rs6987444	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	148,164 European ancestry individuals	NA	8q23.3	LINC00536	rs6987444-A	0.62	1E-12	(BMI-adjusted)	0.028	[0.02-0.036] unit increase	Affymetrix, Illumina, Perlegen [10019203] (imputed)	N
1478	chr8	117111909	117111910	rs58833541	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		8q23.3	NR	rs58833541-G	NR	5E-9		0.0453331	NR unit decrease	NR [NR] (imputed)	N
1478	chr8	117167842	117167843	rs1005502	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	8q23.3	LINC00536	rs1005502-C	0.256903	2E-38		0.0277135	[0.024-0.032] unit increase	NR [13737936] (imputed)	N
1478	chr8	117167842	117167843	rs1005502	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	8q23.3		rs1005502-?	NR	1E-14				NR [~ 8900000] (imputed)	N
1478	chr8	117167842	117167843	rs1005502	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	8q23.3		rs1005502-?	NR	9E-33				NR [~ 8900000] (imputed)	N
1478	chr8	117167842	117167843	rs1005502	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	8q23.3		rs1005502-?	NR	2E-31		0.026736	[0.022-0.031] unit increase	Affymetrix [20259828] (imputed)	N
1478	chr8	117167842	117167843	rs1005502	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	8q23.3	LINC00536	rs1005502-C	0.266126	1E-8	(men)	0.0329571	[0.021-0.045] unit increase	NR [17166351] (imputed)	N
1478	chr8	117167842	117167843	rs1005502	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	8q23.3	LINC00536	rs1005502-C	0.265196	6E-11		0.0253112	[0.018-0.033] unit increase	NR [17166351] (imputed)	N
1479	chr8	117209547	117209548	rs13267382	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	8q23.3		rs13267382-A	NR	2E-12		1.04	[1.03-1.05]	Affymetrix, Illumina [NR] (imputed)	N
1479	chr8	117209547	117209548	rs13267382	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	8q23.3	LINC00536	rs13267382-A	0.36	2E-11	(EA)	1.03	[1.01-1.05] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
1479	chr8	117209547	117209548	rs13267382	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	46,785 European ancestry cases, 42,892 European ancestry controls	NA	8q23.3	LINC00536	rs13267382-A	0.36	5E-6		1.05	[1.03-1.07]	Affymetrix, Illumina [~ 14000000] (imputed)	N
1479	chr8	117209547	117209548	rs13267382	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	15,748 European ancestry cases, 18,084 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls	8q23.3	LINC00536	rs13267382-A	0.36	2E-8		1.05	[1.03-1.07]	Affymetrix, Illumina [~ 11600000] (imputed)	N
1479	chr8	117225988	117225989	rs10090449	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	8q23.3	NR	rs10090449-T	0.0550098	2E-11		0.0457659	[0.032-0.059] unit decrease	NR [19129689] (imputed)	N
1479	chr8	117239873	117239874	rs998245	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	8q23.3		rs998245-?	NR	1E-20				NR [~ 8900000] (imputed)	N
1479	chr8	117239873	117239874	rs998245	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		8q23.3	NR	rs998245-T	NR	1E-8		0.051353	NR unit decrease	NR [NR] (imputed)	N
1479	chr8	117300170	117300171	rs7822185	32699080	Brhane Y	2020-07-22	Cancer Epidemiol Biomarkers Prev	Genetic determinants of lung cancer prognosis in never smokers: A pooled analysis in the International Lung Cancer Consortium.	Lung cancer (survival time) in never smokers	1,569 European ancestry individuals	887 Japanese ancestry individuals	8q23.3	LINC00536	rs7822185-A	NR	6E-7	(EA)	2.71	[1.83-4.00]	Illumina [629283] (imputed)	N
1480	chr8	117309900	117309901	rs10955770	30456811	Moss LC	2018-11-19	Genet Epidemiol	Using Bayes model averaging to leverage both gene main effects and G x  E interactions to identify genomic regions in genome-wide association studies.	Asthma x Hispanic interaction (2df)	606 Hispanic cases, 792 Hispanic controls, 643 European ancestry cases, 959 European ancestry controls	NA	8q23.3	NR	rs10955770-?	NR	8E-8				NR [6212909] (imputed)	N
1480	chr8	117333796	117333797	rs12542922	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls, 2,149 African ancestry cases, 6,055 African ancestry controls, 1,239 Japanese ancestry cases, 3,976 Japanese ancestry controls, 606 Latino cases, 792 Latino controls	NA	8q23.3	TRPS1, EIF3H	rs12542922-A	0.72	2E-6	(Latino)	1.6393442		Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
1480	chr8	117337396	117337397	rs72683967	34834492	Espuela-Ortiz A	2021-11-03	J Pers Med	Role of Sex on the Genetic Susceptibility to Childhood Asthma in Latinos and African Americans.	Childhood asthma	3,075 African ancestry, European ancestry, Native American ancestry females	NA	8q23.3		rs72683967-G	NR	5E-7		0.66	[0.49-0.89]	Affymetrix [6680224] (imputed)	N
1480	chr8	117365413	117365414	rs11778307	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	8q23.3	NR	rs11778307-G	0.238	5E-8		0.00692151	[0.0044-0.0094] unit increase	NR [9732723] (imputed)	N
1480	chr8	117392155	117392156	rs1527934	27927641	Ombrello MJ	2016-12-07	Ann Rheum Dis	Genetic architecture distinguishes systemic juvenile idiopathic arthritis from other forms of juvenile idiopathic arthritis: clinical and therapeutic implications.	Systemic juvenile idiopathic arthritis	178 European ancestry cases, 434 European ancestry controls, 81 Hispanic/Latin American cases, 177 Hispanic/Latin American controls, 511 cases, 6,336 controls	NA	8q23.3	EIF3H, LINC00536	rs1527934-?		2E-6	(Additive)	1.7	[1.40-4.60]	Illumina [5600610] (imputed)	N
1480	chr8	117409141	117409142	rs78977294	34356046	Oluwafemi OO	2021-07-01	Genes (Basel)	Genome-Wide Association Studies of Conotruncal Heart Defects with Normally Related Great Vessels in the United States.	Conotruncal heart defects with normally related great vessels (without 22q.11.2 deletion syndrome)	294 European ancestry cases, 2,976 European ancestry controls, 641 trios	NA	8q23.3		rs78977294-?	NR	8E-7				Illumina [3311160] (imputed)	N
1481	chr8	117475289	117475290	rs4129294	31596875	Traylor M	2019-10-09	PLoS One	Genetic associations with radiological damage in rheumatoid arthritis: Meta-analysis of seven genome-wide association studies of 2,775 cases.	Joint damage in rheumatoid arthritis	2,527 European ancestry individuals, 196 African ancestry individuals, 52 individuals	NA	8q23.3	LOC105375711	rs4129294-?	NR	1E-6				Affymetrix, Illumina [4802696] (imputed)	N
1481	chr8	117475289	117475290	rs4129294	31596875	Traylor M	2019-10-09	PLoS One	Genetic associations with radiological damage in rheumatoid arthritis: Meta-analysis of seven genome-wide association studies of 2,775 cases.	Joint damage in rheumatoid arthritis	2,527 European ancestry individuals	NA	8q23.3	LOC105375711	rs4129294-?	NR	4E-6				Affymetrix, Illumina [2723488] (imputed)	N
1481	chr8	117478318	117478319	rs149472935	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Endometriosis	645 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	8q23.3	Intergenic	rs149472935-?		3E-6		3.31	[2.00-5.49]	Illumina [7645193] (imputed)	N
1481	chr8	117482197	117482198	rs72679530	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	8q23.3	intergenic	rs72679530-A	0.0574780560915261	2E-7	(F_Rhodospirillaceae_RNT)	0.390537	[0.24-0.54] unit increase	Illumina [7711310] (imputed)	N
1481	chr8	117487676	117487677	rs7005255	29682794	Szekely E	2018-04-22	Genet Epidemiol	Genetic associations with childhood brain growth, defined in two longitudinal cohorts.	Right lateral prefrontal cortical growth	581 European ancestry individuals, 31 African American individuals, 8 Asian American individuals, 15 admixed individuals, 80 other ancestries individuals	NA	8q23.3	LINC00536, EIF3H	rs7005255-?	NR	7E-6				Illumina [at least 653030]	N
1481	chr8	117541606	117541607	rs13279799	25064007	Nakajima M	2014-07-27	Nat Genet	A genome-wide association study identifies susceptibility loci for ossification of the posterior longitudinal ligament of the spine.	Ossification of the posterior longitudinal ligament of the spine	1,112 Japanese ancestry cases, 6,810 Japanese ancestry controls	548 Japanese ancestry cases, 6,469 Japanese ancestry controls	8q23.3	LINC00536, EIF3H	rs13279799-G	0.319	1E-10		1.28	[1.19-1.38]	Illumina [5163786] (imputed)	N
1481	chr8	117556269	117556270	rs4876662	21223598	Wineinger NE	2011-01-11	BMC Med Genomics	Genome-wide joint SNP and CNV analysis of aortic root diameter in African Americans: the HyperGEN study.	Aortic root size	1,086 African American individuals	NA	8q23.3	intergenic	rs4876662-?	0.20	2E-6		0.1317	[0.081-0.182] cm increase	Affymetrix [NR]	N
1481	chr8	117563531	117563532	rs1550162	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	8q23.3	NR	rs1550162-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
1481	chr8	117564935	117564936	rs7817087	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	8q23.3	LINC00536, EIF3H	rs7817087-?	NR	1E-10		0.01935154	[0.013-0.025] unit decrease	Illumina [27896057] (imputed)	N
1481	chr8	117566386	117566387	rs4876361	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8q23.3	EIF3H	rs4876361-G	NR	1E-8		0.0196063	[0.013-0.026] unit increase	Affymetrix [321114] (imputed)	N
1481	chr8	117566386	117566387	rs4876361	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	8q23.3	EIF3H	rs4876361-G	NR	3E-9		0.0186899	[0.012-0.025] unit increase	Affymetrix [321016] (imputed)	N
1481	chr8	117566386	117566387	rs4876361	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	8q23.3		rs4876361-?	NR	1E-35				NR [~ 8900000] (imputed)	N
1482	chr8	117574514	117574515	rs140355816	24737748	Whiffin N	2014-04-15	Hum Mol Genet	Identification of susceptibility loci for colorectal cancer in a genome-wide meta-analysis.	Colorectal cancer	5,626 European ancestry cases, 7,817 European ancestry controls	14,037 European ancestry cases, 15,937 European ancestry controls	8q23.3	EIF3H	rs140355816-G	0.017	2E-8		1.591	[NR]	Illumina [NR] (imputed)	N
1482	chr8	117588100	117588101	rs150445207	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Endometriosis	645 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	8q23.3	Intergenic	rs150445207-?		7E-7		3.91	[2.28-6.70]	Illumina [7645193] (imputed)	N
1482	chr8	117607668	117607669	rs189271369	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	8q23.3	NR	rs189271369-?	NR	8E-6		0.0076126	[0.0043-0.011] unit decrease	Affymetrix [805426] (imputed)	N
1482	chr8	117611461	117611462	rs2001480	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	8q23.3		rs2001480-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1482	chr8	117620111	117620112	rs2437841	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Colorectal cancer	7,062 Japanese ancestry cases, 195,745 Japanese ancestry controls	NA	8q23.3		rs2437841-A	0.460497819	2E-8		0.90708834	[0.876599941-0.938637177]	Illumina [8919992] (imputed)	N
1482	chr8	117621591	117621592	rs2511653	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Colorectal cancer	6,581 European ancestry cases, 463,421 European ancestry controls, 8,305 East Asian ancestry cases, 159,386 East Asian ancestry controls	NA	8q23.3		rs2511653-T	NR	2E-11		0.0912	[0.065-0.118] unit decrease	Affymetrix, Illumina [25843452] (imputed)	N
1482	chr8	117624092	117624093	rs2450115	30529582	Lu Y	2018-12-06	Gastroenterology	Large-scale Genome-wide Association Study of East Asians Identifies Loci Associated With Risk for Colorectal Cancer.	Colorectal cancer	22,775 East Asian ancestry cases, 47,731 East Asian ancestry controls	NA	8q23.3	EIF3H	rs2450115-T	0.56	2E-14		1.11	[1.08-1.14]	Affymetrix, Illumina [up to 10700000] (imputed)	N
1482	chr8	117624092	117624093	rs2450115	29471430	Tanikawa C	2018-02-17	Carcinogenesis	GWAS Identifies Two Novel Colorectal Cancer Loci at 16q24.1 and 20q13.12.	Colorectal cancer	6,692 Japanese ancestry cases, 27,178 Japanese ancestry controls	3,713 Japanese ancestry cases, 7,333 Japanese ancestry controls	8q23.3	NR	rs2450115-T	NR	9E-7		1.084	[1.049-1.119]	Illumina [6774630] (imputed)	N
1482	chr8	117624092	117624093	rs2450115	29471430	Tanikawa C	2018-02-17	Carcinogenesis	GWAS Identifies Two Novel Colorectal Cancer Loci at 16q24.1 and 20q13.12.	Colorectal cancer	6,692 Japanese ancestry cases, 27,178 Japanese ancestry controls	3,713 Japanese ancestry cases, 7,333 Japanese ancestry controls	8q23.3	EIF3H	rs2450115-T	0.522	5E-7		1.105	[1.063-1.149]	Illumina [6774630] (imputed)	N
1482	chr8	117624092	117624093	rs2450115	26965516	Zeng C	2016-03-08	Gastroenterology	Identification of Susceptibility Loci and Genes for Colorectal Cancer Risk.	Colorectal cancer	4,508 East Asian ancestry cases, 16,588 East Asian ancestry controls	11,044 East Asian ancestry cases, 18,036 East Asian ancestry controls	8q23.3	EIF3H	rs2450115-T	0.58	1E-12		1.12	[1.08-1.15]	Affymetrix, Illumina [~ 4000000] (imputed)	N
1482	chr8	117629410	117629411	rs3133285	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	8q23.3	EIF3H	rs3133285-G	0.8209	6E-10		1.07	[1.05-1.10]	Affymetrix, Illumina [16900397] (imputed)	N
1482	chr8	117630682	117630683	rs16892766	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Rectal cancer	2,091 European ancestry cases, 410,350 European ancestry controls	NA	8q23.3		rs16892766-C	NR	8E-7		1.2921567	NR	Affymetrix [7846216] (imputed)	N
1482	chr8	117630682	117630683	rs16892766	31089142	Law PJ	2019-05-14	Nat Commun	Association analyses identify 31 new risk loci for colorectal cancer susceptibility.	Colorectal cancer	31,197 European ancestry cases, 61,770 European ancestry controls	NA	8q23.3	NR	rs16892766-C	NR	1E-35		1.26	[1.22-1.31]	Affymetrix, Illumina [> 10000000] (imputed)	N
1482	chr8	117630682	117630683	rs16892766	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	8q23.3	EIF3H	rs16892766-C	0.0829	4E-32		1.2	[1.17-1.24]	Affymetrix, Illumina [16900397] (imputed)	N
1482	chr8	117630682	117630683	rs16892766	29917119	Schmit SL	2018-06-16	J Natl Cancer Inst	Novel Common Genetic Susceptibility Loci for Colorectal Cancer.	Colorectal cancer	36,948 European ancestry cases, 30,864 European ancestry controls	12,952 European ancestry cases, 48,383 European ancestry controls, 8,580 East Asian ancestry cases, 13,050 East Asian ancestry controls, 1,611 Hispanic cases, 4,330 Hispanic controls, 1,894 African American cases, 4,703 African American controls	8q23.3	NR	rs16892766-C	0.09	4E-24	(EA)	1.2195122	[1.18-1.28]	Affymetrix, Illumina [12931465] (imputed)	N
1482	chr8	117630682	117630683	rs16892766	26151821	Schumacher FR	2015-07-07	Nat Commun	Genome-wide association study of colorectal cancer identifies six new susceptibility loci.	Colorectal cancer	18,299 European ancestry cases, 19,656 European ancestry controls	4,725 East Asian ancestry cases, 9,969 East Asian ancestry controls	8q23.3	EIF3H	rs16892766-C	0.1	3E-12		1.2048193	[1.15-1.26]	Affymetrix, Illumina [~ 2500000] (imputed)	N
1482	chr8	117630682	117630683	rs16892766	21761138	Peters U	2011-07-15	Hum Genet	Meta-analysis of new genome-wide association studies of colorectal cancer risk.	Colorectal cancer	2,906 European ancestry cases, 3,416 European ancestry controls	8,161 European ancestry cases, 9,101 European ancestry controls	8q23.3	EIF3H	rs16892766-?	0.08	4E-7		1.24	[1.14-1.34]	Illumina [378739]	N
1482	chr8	117630682	117630683	rs16892766	18372905	Tomlinson IP	2008-03-30	Nat Genet	A genome-wide association study identifies colorectal cancer susceptibility loci on chromosomes 10p14 and 8q23.3.	Colorectal cancer	922 European ancestry cases, 927 European ancestry controls	17,089 European ancestry cases, 16,862 European ancestry controls, 783 cases, 664 controls	8q23.3	EIF3H	rs16892766-A	0.07	3E-18		1.27	[1.20-1.34]	Illumina [547647]	N
1482	chr8	117631012	117631013	rs200235517	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	8q23.3		rs200235517-G	NR	1E-7		1.2150668	[1.13-1.31]	Affymetrix [7846216] (imputed)	N
1482	chr8	117632964	117632965	rs6469654	31826910	Lu Y	2019-12-11	Cancer Epidemiol Biomarkers Prev	Identification of novel loci and new risk variant in known loci for colorectal cancer risk in East Asians.	Colorectal cancer	23,572 East Asian ancestry cases, 48,700 East Asian ancestry controls	58,131 European ancestry cases, 67,347 European ancestry controls	8q23.3		rs6469654-C	0.5	2E-17	(East Asian)	1.12	[1.09-1.15]	Affymetrix, Illumina [up to 47000000] (imputed)	N
1482	chr8	117632964	117632965	rs6469654	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	8q23.3	EIF3H	rs6469654-C	0.7712	4E-8	(conditioned on lead SNPs in LD)	1.07	[1.04-1.10]	Affymetrix, Illumina [16900397] (imputed)	N
1482	chr8	117632964	117632965	rs6469654	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	8q23.3		rs6469654-C	0.7769	1E-9		0.0103	[0.007-0.0136] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1482	chr8	117632964	117632965	rs6469654	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	8q23.3	Intergenic	rs6469654-C	0.7769	1E-9	(MTAG)	0.0096	[0.0065-0.0127] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1482	chr8	117635601	117635602	rs16888589	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Colon polyp	22,049 European ancestry cases, 332,368 European ancestry controls, 4,768 East Asian ancestry cases, 166,052 East Asian ancestry controls	NA	8q23.3		rs16888589-G	NR	1E-18		0.1705	[0.13-0.21] unit increase	Affymetrix, Illumina [20457468] (imputed)	N
1482	chr8	117641609	117641610	rs11987235	22969067	Mishra A	2012-09-13	Invest Ophthalmol Vis Sci	Genetic variants near PDGFRA are associated with corneal curvature in Australians.	Corneal curvature	1,788 European ancestry twins and family members, 1,013 European ancestry unrelated individuals	NA	8q23.3	EIF3H	rs11987235-A	NR	7E-6		0.0384	[0.022-0.055] mm decrease	Illumina [1704858] (imputed)	N
1482	chr8	117647787	117647788	rs6469656	30529582	Lu Y	2018-12-06	Gastroenterology	Large-scale Genome-wide Association Study of East Asians Identifies Loci Associated With Risk for Colorectal Cancer.	Colorectal cancer	22,775 East Asian ancestry cases, 47,731 East Asian ancestry controls	NA	8q23.3	EIF3H	rs6469656-A	0.65	2E-10		1.09	[1.06-1.12]	Affymetrix, Illumina [up to 10700000] (imputed)	N
1482	chr8	117647787	117647788	rs6469656	26965516	Zeng C	2016-03-08	Gastroenterology	Identification of Susceptibility Loci and Genes for Colorectal Cancer Risk.	Colorectal cancer	4,508 East Asian ancestry cases, 16,588 East Asian ancestry controls	11,044 East Asian ancestry cases, 18,036 East Asian ancestry controls	8q23.3	EIF3H	rs6469656-A	0.67	2E-12		1.11	[1.08-1.14]	Affymetrix, Illumina [~ 4000000] (imputed)	N
1482	chr8	117647787	117647788	rs6469656	24836286	Zhang B	2014-05-18	Nat Genet	Large-scale genetic study in East Asians identifies six new loci associated with colorectal cancer risk.	Colorectal cancer	2,098 East Asian ancestry cases, 6,172 East Asian ancestry controls	12,865 East Asian ancestry cases, 25,773 East Asian ancestry controls, up to 16,984 European ancestry cases, up to 18,262 European ancestry controls	8q23.3	NR	rs6469656-A	0.65	5E-8	(East Asian)	1.09	[1.06-1.13]	Affymetrix, Illumina [2400000] (imputed)	N
1482	chr8	117656870	117656871	rs2278491	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	8q23.3	EIF3H	rs2278491-C	0.878	6E-6	(EA, men)	0.028	[0.016-0.04] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1482	chr8	117658078	117658079	rs10108262	34671089	Hikino K	2021-10-21	J Hum Genet	Genome-wide association study of colorectal polyps identified highly overlapping polygenic architecture with colorectal cancer.	Colorectal cancer	6,845 East Asian ancestry cases, 80,764 East Asian ancestry controls	NA	8q23.3		rs10108262-?	NR	5E-8		1.16	[1.09-1.23]	Illumina [NR] (imputed)	N
1483	chr8	117741912	117741913	rs17811450	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	8q24.11		rs17811450-?	NR	7E-10				NR [~ 8900000] (imputed)	N
1483	chr8	117748855	117748856	rs546505943	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	8q24.11	EIF3H	rs546505943-A	0.0026	5E-6		1.7225	[0.99-2.46] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1483	chr8	117790913	117790914	rs117079142	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Colon cancer	3,793 European ancestry cases, 410,350 European ancestry controls	NA	8q24.11		rs117079142-A	NR	8E-7		1.283697	NR	Affymetrix [7846216] (imputed)	N
1483	chr8	117790913	117790914	rs117079142	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	8q24.11	EIF3H	rs117079142-A	0.0432	2E-16		1.19	[1.14-1.24]	Affymetrix, Illumina [16900397] (imputed)	N
1483	chr8	117813540	117813541	rs11779352	34671089	Hikino K	2021-10-21	J Hum Genet	Genome-wide association study of colorectal polyps identified highly overlapping polygenic architecture with colorectal cancer.	Colorectal polyp and colorectal cancer (MTAG)	11,292 East Asian ancestry cases, 237,990 East Asian ancestry controls	NA	8q24.11		rs11779352-?	NR	6E-9	(Colorectal polyp)	1.11	[1.07-1.15]	Illumina [NR] (imputed)	N
1483	chr8	117813540	117813541	rs11779352	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Colorectal cancer	8,305 East Asian ancestry cases, 159,386 East Asian ancestry controls	NA	8q24.11		rs11779352-A	0.133069822	3E-9		0.14788052	[0.099-0.197] unit increase	Illumina [13428297] (imputed)	N
1484	chr8	117848306	117848307	rs76316943	25990418	Al-Tassan NA	2015-05-20	Sci Rep	A new GWAS and meta-analysis with 1000Genomes imputation identifies novel risk variants for colorectal cancer.	Colorectal cancer	7,577 European ancestry cases, 9,979 European ancestry controls	NA	8q24.11	EIF3H	rs76316943-A	0.01	2E-11		1.58	[NR]	Affymetrix, Illumina [~ 10000000] (imputed)	N
1484	chr8	117860774	117860775	rs10098598	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Schizoaffective disorder-bipolar type	977 European ancestry cases, 31,358 European ancestry controls	NA	8q24.11	NR	rs10098598-T	0.0302	6E-7		1.94507	[NR]	NR [9372253] (imputed)	N
1484	chr8	117910803	117910804	rs2921759	29773799	Horikoshi M	2018-05-17	Nat Commun	Elucidating the genetic architecture of reproductive ageing in the Japanese population.	Menopause (age at onset)	43,861 Japanese ancestry women	32,545 European ancestry women	8q24.11	RAD21	rs2921759-T	0.82	3E-7				Illumina [at least 532488] (imputed)	N
1484	chr8	117910803	117910804	rs2921759	29773799	Horikoshi M	2018-05-17	Nat Commun	Elucidating the genetic architecture of reproductive ageing in the Japanese population.	Menopause (age at onset)	43,861 Japanese ancestry women	32,545 European ancestry women	8q24.11	RAD21	rs2921759-T	0.82	2E-8	(japanese)	0.19	[0.13-0.25] year increase	Illumina [at least 532488] (imputed)	N
1484	chr8	117918896	117918897	rs12541437	26528553	Davenport ER	2015-11-03	PLoS One	Genome-Wide Association Studies of the Human Gut Microbiota.	Gut microbiome composition (winter)	93 Hutterite individuals	NA	8q24.11	NR	rs12541437-?		2E-6	(genus_Lachnobacterium)	0.6024646	[0.33-0.87] unit increase	Affymetrix [211319]	N
1484	chr8	117928824	117928825	rs3020167	30087447	Aubart M	2018-08-07	Eur J Hum Genet	Association of modifiers and other genetic factors explain Marfan syndrome clinical variability.	Severe aortic features in Marfan syndrome	51 European ancestry cases, 47 European ancestry controls	NA	8q24.11	C8orf81, LOC441376	rs3020167-?	NR	5E-6		6.5	[NR]	Illumina [at least 701570] (imputed)	N
1485	chr8	117973851	117973852	rs6997279	29703844	van Zuydam NR	2018-04-27	Diabetes	A Genome-Wide Association Study of Diabetic Kidney Disease in Subjects With Type 2 Diabetes.	Chronic kidney disease and diabetic kidney disease in type 2 diabetes	408 European ancestry cases, 1,890 European ancestry controls	1,408 European ancestry cases, 3,840 European ancestry controls, 268 Asian cases, 632 Asian controls, 75 Chinese ancestry cases, 119 Chinese ancestry controls	8q24.11	NR	rs6997279-?		1E-7		1.48	[1.19-1.84]	Affymetrix, Illumina [up to 9343778] (imputed)	N
1485	chr8	118024314	118024315	rs531347476	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	8q24.11	SLC30A8	rs531347476-C	0.997	3E-8		2.16	1.64-2.83	Illumina [12557761] (imputed)	N
1485	chr8	118025644	118025645	rs3019885	27393504	Zanetti KA	2016-05-13	Lung Cancer	Genome-wide association study confirms lung cancer susceptibility loci on chromosomes 5p15 and 15q25 in an African-American population.	Lung cancer	1,737 African American cases, 3,602 African American controls	866 African American cases, 796  African American controls	8q24.11	SLC30A8	rs3019885-G	0.2817	3E-6		1.2394	[1.1323-1.3565]	Illumina [1024001]	N
1485	chr8	118025644	118025645	rs3019885	21814517	Noguchi E	2011-07-21	PLoS Genet	Genome-wide association study identifies HLA-DP as a susceptibility gene for pediatric asthma in Asian populations.	Asthma	938 Japanese ancestry cases, 2,376 Japanese ancestry controls	1653 East Asian ancestry cases, 1453 East Asian ancestry controls	8q24.11	SLC30A8	rs3019885-G	0.31	5E-13		1.34	[1.24-1.45]	Illumina [450326]	N
1485	chr8	118089512	118089513	rs7815720	24002674	Ozel AB	2013-09-04	Hum Genet	Genome-wide association study and meta-analysis of intraocular pressure.	Intraocular pressure	2,847 European ancestry primary open angle glaucoma cases, 3,389 European ancestry controls	NA	8q24.11	SLC30A8	rs7815720-A	0.13	2E-6		1.02	[0.61-1.43] mmHg decrease	Illumina [466573]	N
1486	chr8	118129020	118129021	rs73702967	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	16,579 African American individuals	NA	8q24.11	SLC30A8	rs73702967-A	0.9819	9E-9		0.142	[0.091-0.193] unit increase	Affymetrix, Illumina [27843817] (imputed)	N
1486	chr8	118150992	118150993	rs11989843	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	8q24.11	SLC30A8	rs11989843-G	0.167	8E-6	(ALT/AST)	0.03	[NR] unit increase	Illumina [899892]	N
1486	chr8	118166326	118166327	rs60461843	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	24,646 African American cases, 31,446 African American controls	NA	8q24.11	NR	rs60461843-T	0.939	1E-9		0.172	[0.12-0.23] unit increase	Affymetrix, Illumina [945603] (imputed)	N
1486	chr8	118170297	118170300	rs149935213	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Type 2 diabetes	5,971 African American cases, 4,135 Hispanic/Latino cases, 2,004 Asian ancestry cases, 1,534 Native Hawaiian ancestry cases, 167 Native American ancestry cases, 231 cases, 9,630 African American controls, 16,345 Hispanic/Latino controls, 2,572 Asian ancestry controls, 2,017 Native Hawaiian ancestry controls, 452 Native American ancestry controls, 667 controls	NA	8q24.11	SLC30A8	rs149935213-?	NR	3E-10		0.2759319	[0.19-0.36] unit decrease	Illumina [24011241] (imputed)	N
1486	chr8	118170297	118170300	rs149935213	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Type 2 diabetes	5,971 African American cases, 4,135 Hispanic/Latino cases, 2,004 Asian ancestry cases, 1,534 Native Hawaiian ancestry cases, 167 Native American ancestry cases, 231 cases, 9,630 African American controls, 16,345 Hispanic/Latino controls, 2,572 Asian ancestry controls, 2,017 Native Hawaiian ancestry controls, 452 Native American ancestry controls, 667 controls	NA	8q24.11	SLC30A8	rs149935213-?	NR	1E-6	(AA)	0.236386	[0.14-0.33] unit decrease	Illumina [24011241] (imputed)	N
1486	chr8	118184782	118184783	rs13266634	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glucose levels	114,870 European ancestry individuals	NA	8q24.11		rs13266634-C	0.69284	5E-13		0.032073	[0.023-0.041] unit increase	NR [11722792] (imputed)	N
1486	chr8	118184782	118184783	rs13266634	34951656	Downie CG	2021-12-24	Diabetologia	Multi-ethnic GWAS and fine-mapping of glycaemic traits identify novel loci in the PAGE Study.	Fasting glucose adjusted for BMI	52,211 European ancestry, African American or Afro-Caribbean, Hispanic or Latin American, Asian ancestry, Other ancestry, Native American ancestry individuals	NA	8q24.11		rs13266634-T	0.2629	2E-14		0.0577	[0.043-0.072] unit decrease	Affymetrix, Illumina [29259056] (imputed)	N
1486	chr8	118184782	118184783	rs13266634	34951656	Downie CG	2021-12-24	Diabetologia	Multi-ethnic GWAS and fine-mapping of glycaemic traits identify novel loci in the PAGE Study.	Fasting glucose adjusted for BMI	19,745 European ancestry individuals	NA	8q24.11		rs13266634-T	0.3105	2E-11		0.0743	[0.053-0.096] unit decrease	Affymetrix, Illumina [29259056] (imputed)	N
1486	chr8	118184782	118184783	rs13266634	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	8q24.11		rs13266634-T	0.410295825	2E-40		0.124027915	[0.11-0.14] unit decrease	Illumina [13429769] (imputed)	N
1486	chr8	118184782	118184783	rs13266634	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	8q24.11		rs13266634-T	NR	2E-59		0.1053	[0.093-0.118] unit decrease	Affymetrix, Illumina [25845091] (imputed)	N
1486	chr8	118184782	118184783	rs13266634	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	8q24.11		rs13266634-T	NR	2E-9		0.0127	[0.0086-0.0168] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
1486	chr8	118184782	118184783	rs13266634	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	8q24.11		rs13266634-T	0.403424861	2E-28		0.110364676	[0.091-0.13] unit decrease	Illumina [13134967] (imputed)	N
1486	chr8	118184782	118184783	rs13266634	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	8q24.11		rs13266634-T	NR	1E-40		0.1044	[0.089-0.12] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1486	chr8	118184782	118184783	rs13266634	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	71,221 East Asian ancestry individuals	NA	8q24.11		rs13266634-T	0.398596	4E-23		0.0424501	[0.034-0.051] unit decrease	Illumina [13466143] (imputed)	N
1486	chr8	118184782	118184783	rs13266634	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	8q24.11		rs13266634-T	NR	5E-133		0.0527	[0.049-0.057] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
1486	chr8	118184782	118184783	rs13266634	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	133,336 East Asian ancestry individuals	NA	8q24.11		rs13266634-T	0.403584	4E-25		0.036034	[0.029-0.043] unit decrease	Illumina [13476509] (imputed)	N
1486	chr8	118184782	118184783	rs13266634	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	35,619 East Asian ancestry individuals	NA	8q24.11	SLC30A8	rs13266634-T	0.4303	5E-16		0.0313	[0.023-0.039] unit decrease	Affymetrix, Illumina [15438438] (imputed)	N
1486	chr8	118184782	118184783	rs13266634	33893285	Guindo-Martinez M	2021-04-23	Nat Commun	The impact of non-additive genetic associations on age-related complex diseases.	Type 2 diabetes	6,967 European ancestry cases, 49,670 European ancestry controls	NA	8q24.11		rs13266634-T	0.3040857	9E-10		0.88		Affymetrix [15533686] (imputed)	N
1486	chr8	118184782	118184783	rs13266634	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	46,511 Asian ancestry cases, 169,776 Asian ancestry controls	NA	8q24.11	NR	rs13266634-C	0.5931	1E-30		0.1004	[0.083-0.117] unit increase	Affymetrix, Illumina [1077427] (imputed)	N
1486	chr8	118184782	118184783	rs13266634	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	8q24.11	NR	rs13266634-C	0.6814	4E-136		0.1024	[0.094-0.11] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1486	chr8	118184782	118184783	rs13266634	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	8q24.11		rs13266634-T	0.411647138	1E-37		0.89813375	[0.883505425-0.913004259]	Illumina [8919992] (imputed)	N
1486	chr8	118184782	118184783	rs13266634	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	8q24.11	SLC30A8	rs13266634-C	0.586	4E-67		1.12	[1.11-1.14]	Affymetrix, Illumina [11800000] (imputed)	N
1486	chr8	118184782	118184783	rs13266634	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	8q24.11	SLC30A8	rs13266634-C	0.59	3E-30		1.11	1.09-1.13	Illumina [12557761] (imputed)	N
1486	chr8	118184782	118184783	rs13266634	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	8q24.11	SLC30A8	rs13266634-T	0.2822	1E-10		0.0134	[0.0093-0.0175] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1486	chr8	118184782	118184783	rs13266634	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes (adjusted for BMI)	up to 48,286 European ancestry cases, up to 250,671 European ancestry controls	NA	8q24.11	SLC30A8	rs13266634-C	0.68	8E-36		1.09	[1.07-1.11]	Affymetrix, Illumina [247470]	N
1486	chr8	118184782	118184783	rs13266634	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes (adjusted for BMI)	48,286 European ancestry cases, 250,671 European ancestry controls, 33,126 African American, East Asian, Hispanic/Latino or South Asian cases, 120,161 African American, East Asian, Hispanic/Latino or South Asian controls	NA	8q24.11	SLC30A8	rs13266634-C	0.691	1E-47		1.09	[1.08-1.11]	Affymetrix, Illumina [247470]	N
1486	chr8	118184782	118184783	rs13266634	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes	up to 48,286 European ancestry cases, up to 250,671 European ancestry controls	NA	8q24.11	SLC30A8	rs13266634-C	0.68	6E-30		1.09	[1.07-1.10]	Affymetrix, Illumina [247470]	N
1486	chr8	118184782	118184783	rs13266634	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes	48,286 European ancestry cases, 250,671 European ancestry controls, 33,126 African American, East Asian, Hispanic/Latino or South Asian cases, 120,161 African American, East Asian, Hispanic/Latino or South Asian controls	NA	8q24.11	SLC30A8	rs13266634-C	0.691	2E-47		1.09	[1.08-1.11]	Affymetrix, Illumina [247470]	N
1486	chr8	118184782	118184783	rs13266634	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Hemoglobin A1c levels	42,790 Japanese ancestry individuals	NA	8q24.11	SLC30A8	rs13266634-?	NR	6E-19		0.06155	[0.048-0.075] unit decrease novel	Illumina [6108953] (imputed)	N
1486	chr8	118184782	118184783	rs13266634	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Blood sugar levels	93,146 Japanese ancestry individuals	NA	8q24.11	SLC30A8	rs13266634-?	NR	2E-19		0.0423	[0.033-0.051] unit decrease novel	Illumina [6108953] (imputed)	N
1486	chr8	118184782	118184783	rs13266634	29358691	Bonas-Guarch S	2018-01-22	Nat Commun	Re-analysis of public genetic data reveals a rare X-chromosomal variant associated with type 2 diabetes.	Type 2 diabetes	up to 12,931 European ancestry cases, up to 57,196 European ancestry controls	NA	8q24.11	SLC30A8	rs13266634-C	NR	3E-15		1.1476312		Affymetrix, Illumina [~ 13000000] (imputed)	N
1486	chr8	118184782	118184783	rs13266634	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	8q24.11	SLC30A8	rs13266634-T	0.2833	4E-42		0.109	[0.093-0.125] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1486	chr8	118184782	118184783	rs13266634	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	8q24.11	SLC30A8	rs13266634-T	0.2833	2E-22	(EA)	0.1113	[0.089-0.134] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1486	chr8	118184782	118184783	rs13266634	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	8q24.11	SLC30A8	rs13266634-T	0.2546	2E-7	(South Asian)	0.0955	[0.059-0.132] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1486	chr8	118184782	118184783	rs13266634	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	Fasting plasma glucose	15,226 British ancestry non-diabetics individuals from 6863 families, 948 British ancestry diabetic individuals from 6863 families.	NA	8q24.11	SLC30A8	rs13266634-T	0.3153	4E-11		0.08332504	[0.059-0.108] mmol/L decrease	Illumina [24111857] (imputed)	N
1486	chr8	118184782	118184783	rs13266634	27189021	Cook JP	2016-05-18	Eur J Hum Genet	Multi-ethnic genome-wide association study identifies novel locus for type 2 diabetes susceptibility.	Type 2 diabetes	746 African American cases, 2,825 African American controls, 743 East Asian ancestry cases, 3,992 East Asian ancestry controls, 7,111 European ancestry cases, 49,688 European ancestry controls, 1,147 Latino cases, 5,352 Latino controls	12,171 European ancestry cases, 56,862 European ancestry controls	8q24.11	SLC30A8	rs13266634-C	0.695	1E-11		1.12	[1.09-1.16]	NR [at least 8497425] (imputed)	N
1486	chr8	118184782	118184783	rs13266634	26818947	Imamura M	2016-01-28	Nat Commun	Genome-wide association studies in the Japanese population identify seven novel loci for type 2 diabetes.	Type 2 diabetes	15,463 Japanese ancestry cases, 26,183 Japanese ancestry controls	20,490 East Asian ancestry cases, 22,922 East Asian ancestry controls, 38,947 European ancestry cases, 121,903 European ancestry controls, 10,587 South Asian ancestry cases, 14,378 South Asian ancestry controls, 3,848 Mexican/Latino cases, 4,366 Mexican/Latino controls	8q24.11	SLC30A8	rs13266634-C	NR	9E-13	(Japanese)	1.12039	[1.08602-1.15585]	Illumina [7521072] (imputed)	N
1486	chr8	118184782	118184783	rs13266634	25625282	Mahajan A	2015-01-27	PLoS Genet	Identification and functional characterization of G6PC2 coding variants influencing glycemic traits define an effector transcript at the G6PC2-ABCB11 locus.	Fasting blood glucose adjusted for BMI	up to 33,231 non-diabetic individuals	NA	8q24.11	SLC30A8	rs13266634-T	NR	3E-10		0.023	[0.015-0.031] unit decrease	Illumina [106489]	N
1486	chr8	118184782	118184783	rs13266634	24647736	Chen P	2014-03-19	Diabetes	Multiple nonglycemic genomic loci are newly associated with blood level of glycated hemoglobin in East Asians.	Glycated hemoglobin levels	17,290 East Asian ancestry individuals, 1,727 Malay ancestry individuals	up to 13,585 East Asian ancestry individuals	8q24.11	SLC30A8	rs13266634-A	0.46	2E-7		0.05	[NR] unit decrease	Affymetrix, Illumina [up to 2400000] (imputed)	N
1486	chr8	118184782	118184783	rs13266634	23945395	Hara K	2013-08-14	Hum Mol Genet	Genome-wide association study identifies three novel loci for type 2 diabetes.	Type 2 diabetes	5,976 Japanese ancestry cases, 20,829 Japanese ancestry controls	24,416 East Asian ancestry cases, 13,985 East Asian ancestry controls	8q24.11	SLC30A8	rs13266634-C	0.58	5E-7		1.12	[1.07-1.17]	Illumina [6209637] (imputed)	N
1486	chr8	118184782	118184783	rs13266634	19734900	Rung J	2009-09-06	Nat Genet	Genetic variant near IRS1 is associated with type 2 diabetes, insulin resistance and hyperinsulinemia.	Type 2 diabetes	679 European ancestry cases, 697 European ancestry controls	5,579 European ancestry cases, 7,096 European ancestry controls	8q24.11	SLC30A8	rs13266634-C	0.68	8E-8		1.16	[1.10-1.22]	Illumina [392365]	N
1486	chr8	118184782	118184783	rs13266634	19401414	Takeuchi F	2009-04-29	Diabetes	Confirmation of multiple risk Loci and genetic impacts by a genome-wide association study of type 2 diabetes in the Japanese population.	Type 2 diabetes	519 Japanese ancestry cases, 503 Japanese ancestry controls	5,110 Japanese ancestry cases, 6,867 Japanese ancestry controls	8q24.11	SLC30A8	rs13266634-C	0.57	2E-14		1.22	[1.16-1.28]	Illumina [482625]	N
1486	chr8	118184782	118184783	rs13266634	19096518	Pare G	2008-12-19	PLoS Genet	Novel association of HK1 with glycated hemoglobin in a non-diabetic population: a genome-wide evaluation of 14,618 participants in the Women's Genome Health Study.	Glycated hemoglobin levels	14,618 European ancestry females	455 European ancestry individuals	8q24.11	SLC30A8	rs13266634-A	0.30	5E-8		0.02	[NR] % decrease	Illumina [337343]	N
1486	chr8	118184782	118184783	rs13266634	19056611	Timpson NJ	2008-12-03	Diabetes	Adiposity-related heterogeneity in patterns of type 2 diabetes susceptibility observed in genome-wide association data.	Type 2 diabetes	958 European ancestry obese cases, 955 European ancestry non-obese cases, 2,938 European ancestry controls	Up to 3,757 European ancestry cases, up to 5,346 European ancestry controls	8q24.11	SLC30A8	rs13266634-?	NR	7E-6	(non-obese)	1.18	[1.10-1.27]	Affymetrix [393453]	N
1486	chr8	118184782	118184783	rs13266634	17463249	Zeggini E	2007-04-26	Science	Replication of genome-wide association signals in UK samples reveals risk loci for type 2 diabetes.	Type 2 diabetes	1,924 European ancestry cases, 2,938 European ancestry controls	3,757 European ancestry cases, 5,346 European ancestry controls	8q24.11	SLC30A8	rs13266634-C	0.69	5E-8	(DGI+FUSION+WTCCC)	1.12	[1.07-1.16]	Affymetrix [393453]	N
1486	chr8	118184782	118184783	rs13266634	17463248	Scott LJ	2007-04-26	Science	A genome-wide association study of type 2 diabetes in Finns detects multiple susceptibility variants.	Type 2 diabetes	1,161 European ancestry cases, 1,174 European ancestry controls	1,215 European ancestry cases, 1,258 European ancestry controls	8q24.11	SLC30A8	rs13266634-C	0.61	5E-8	(DGI+FUSION+WTCCC)	1.12	[1.07-1.16]	Illumina [315635]	N
1486	chr8	118184782	118184783	rs13266634	17463246	Saxena R	2007-04-26	Science	Genome-wide association analysis identifies loci for type 2 diabetes and triglyceride levels.	Type 2 diabetes	1,464 European ancestry cases, 1,467 European ancestry controls	5,065 European ancestry cases, 5,785 European ancestry controls, at least 18,129 cases and controls.	8q24.11	SLC30A8	rs13266634-C	0.65	5E-8		1.12	[1.07-1.16]	Affymetrix [386731]	N
1486	chr8	118184782	118184783	rs13266634	17460697	Steinthorsdottir V	2007-04-26	Nat Genet	A variant in CDKAL1 influences insulin response and risk of type 2 diabetes.	Type 2 diabetes	1,399 European ancestry cases, 5,275 European ancestry controls	2,174 European ancestry cases, 7,287 European ancestry controls	8q24.11	SLC30A8	rs13266634-C	0.67	3E-6		1.15	[1.08-1.22]	Illumina [at least 313179]	N
1486	chr8	118184782	118184783	rs13266634	17293876	Sladek R	2007-02-11	Nature	A genome-wide association study identifies novel risk loci for type 2 diabetes.	Type 2 diabetes	661 European ancestry cases, 614 European ancestry controls	2,617 European ancestry cases, 2,894 European ancestry controls	8q24.11	SLC30A8	rs13266634-C	0.70	6E-8		1.18	[0.69-1.67]	Illumina [392935]	N
1486	chr8	118185024	118185025	rs3802177	33842983	Chung RH	2021-04-12	Diabetologia	Multi-omics analysis identifies CpGs near G6PC2 mediating the effects of genetic variants on fasting glucose.	Fasting blood glucose	18,122 Han Chinese ancestry individuals	1,989 Han Chinese ancestry individuals	8q24.11	SLC30A8	rs3802177-A	0.46	6E-11		0.066	[0.046-0.086] unit decrease	Affymetrix [774398] (imputed)	N
1486	chr8	118185024	118185025	rs3802177	31118516	Flannick J	2019-05-22	Nature	Exome sequencing of 20,791 cases of type 2 diabetes and 24,440 controls.	Type 2 diabetes	2,277 African American cases, 3,098 East Asian ancestry cases, 3,704 European ancestry cases, 6,215 Hispanic/Latino cases, 2,939 South Asian ancestry cases, 2,283 African American controls, 2,921 East Asian ancestry controls, 3,514 European ancestry controls, 5,939 Hispanic/Latino controls, 3,022 South Asian ancestry controls	NA	8q24.11	SLC30A8	rs3802177-G	0.31	8E-14		1.1600928	NR	Affymetrix, Illumina [up to 35256845] (imputed)	N
1486	chr8	118185024	118185025	rs3802177	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 29,0641 European ancestry controls	NA	8q24.11	SLC30A8	rs3802177-A	0.309928	4E-14		0.09513111	[0.071-0.12] unit decrease	Affymetrix [7288503] (imputed)	N
1486	chr8	118185024	118185025	rs3802177	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Type 2 diabetes	approximately 459,000 European ancestry individuals	NA	8q24.11		rs3802177-?	NR	2E-24				NR [~ 8900000] (imputed)	N
1486	chr8	118185024	118185025	rs3802177	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	8q24.11	SLC30A8	rs3802177-G	0.6851	1E-55		1.11	[1.10-1.13]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1486	chr8	118185024	118185025	rs3802177	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	8q24.11	SLC30A8	rs3802177-A	0.311281439217812	2E-52		0.1217	[0.11-0.14] unit decrease	NR [5035015] (imputed)	N
1486	chr8	118185024	118185025	rs3802177	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	8q24.11	SLC30A8	rs3802177-G	0.29	5E-10	(Male)	0.021	[0.015-0.027] unit increase	Illumina [6108953] (imputed)	N
1486	chr8	118185024	118185025	rs3802177	26961502	Wood AR	2016-03-10	Diabetologia	Variants in the FTO and CDKAL1 loci have recessive effects on risk of obesity and type 2 diabetes, respectively.	Type 2 diabetes	4,040 British ancestry cases, 113,735 British ancestry controls	NA	8q24.11	SLC30A8	rs3802177-G	NR	1E-6	(additive model)	1.131	[1.08-1.18]	NR [9288881] (imputed)	N
1486	chr8	118185024	118185025	rs3802177	25187374	Hwang JY	2014-09-03	Diabetes	Genome-wide association meta-analysis identifies novel variants associated with fasting plasma glucose in East Asians.	Fasting plasma glucose	24,740 East Asian ancestry individuals	21,345 East Asian ancestry individuals	8q24.11	SLC30A8	rs3802177-?	NR	5E-12		0.063	[0.045-0.081] unit increase	Affymetrix, Illumina [up to 2315813] (imputed)	N
1486	chr8	118185024	118185025	rs3802177	24509480	Mahajan A	2014-02-09	Nat Genet	Genome-wide trans-ancestry meta-analysis provides insight into the genetic architecture of type 2 diabetes susceptibility.	Type 2 diabetes	12,171 European ancestry cases, 56,862 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls	21,491 European ancestry cases, 55,647 European ancestry controls	8q24.11	SLC30A8	rs3802177-G	0.7	2E-18		1.16	[1.11-1.22]	Affymetrix, Illumina [2500000] (imputed)	N
1486	chr8	118185024	118185025	rs3802177	22885922	Morris AP	2012-09-01	Nat Genet	Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes.	Type 2 diabetes	6,377 European ancestry male cases, 5,794 European ancestry female cases, 22,243 European ancestry male controls, 34,619 European ancestry female controls	12,938 European ancestry male cases, 8,553 European ancestry female cases, 904 Pakistani ancestry male cases, 274 Pakistani ancestry female cases, 30,273 European ancestry male controls, 25,374 European ancestry female controls, 2,088 Pakistani ancestry male controls, 384 Pakistani ancestry female controls	8q24.11	SLC30A8	rs3802177-G	NR	7E-11	(female)	1.13	[1.09-1.17]	Affymetrix, Illumina [up to 2500000] (imputed)	N
1486	chr8	118185024	118185025	rs3802177	22885922	Morris AP	2012-09-01	Nat Genet	Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes.	Type 2 diabetes	6,377 European ancestry male cases, 5,794 European ancestry female cases, 22,243 European ancestry male controls, 34,619 European ancestry female controls	12,938 European ancestry male cases, 8,553 European ancestry female cases, 904 Pakistani ancestry male cases, 274 Pakistani ancestry female cases, 30,273 European ancestry male controls, 25,374 European ancestry female controls, 2,088 Pakistani ancestry male controls, 384 Pakistani ancestry female controls	8q24.11	SLC30A8	rs3802177-G	NR	1E-16	(men)	1.15	[1.11-1.18]	Affymetrix, Illumina [up to 2500000] (imputed)	N
1486	chr8	118185024	118185025	rs3802177	22885922	Morris AP	2012-09-01	Nat Genet	Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes.	Type 2 diabetes	6,377 European ancestry male cases, 5,794 European ancestry female cases, 22,243 European ancestry male controls, 34,619 European ancestry female controls	12,938 European ancestry male cases, 8,553 European ancestry female cases, 904 Pakistani ancestry male cases, 274 Pakistani ancestry female cases, 30,273 European ancestry male controls, 25,374 European ancestry female controls, 2,088 Pakistani ancestry male controls, 384 Pakistani ancestry female controls	8q24.11	SLC30A8	rs3802177-G	0.662967097343608	1E-21		1.14	[1.11-1.17]	Affymetrix, Illumina [up to 2500000] (imputed)	N
1486	chr8	118185024	118185025	rs3802177	22693455	Perry JR	2012-05-31	PLoS Genet	Stratifying type 2 diabetes cases by BMI identifies genetic risk variants in LAMA1 and enrichment for risk variants in lean compared to obese cases.	Type 2 diabetes	2,112 lean type 2 diabetes cases, 4,123 obese type 2 diabetes cases, 54,412 controls	2,881 lean type 2 diabetes cases, 8,702 obese type 2 diabetes cases, 18,957 controls	8q24.11	SLC30A8	rs3802177-G	0.68	4E-8	(Lean)	1.23	[1.15-1.33]	NR [NR]	N
1486	chr8	118185024	118185025	rs3802177	20581827	Voight BF	2010-06-27	Nat Genet	Twelve type 2 diabetes susceptibility loci identified through large-scale association analysis.	Type 2 diabetes	8,130 European ancestry cases, 38,987 European ancestry controls	Up to 34,412 European ancestry cases, 59,925 European ancestry controls	8q24.11	SLC30A8	rs3802177-G		1E-8		1.15	[1.10-1.21]	Affymetrix, Illumina [2426886] (imputed)	N
1486	chr8	118185732	118185733	rs11558471	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Alanine levels	115,078 European ancestry individuals	NA	8q24.11		rs11558471-A	0.685331	2E-12		0.0311474	[0.023-0.04] unit increase	NR [11722792] (imputed)	N
1486	chr8	118185732	118185733	rs11558471	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	8q24.11	SLC30A8	rs11558471-A	0.6787	3E-25		0.0151	[0.012-0.018] unit increase	Affymetrix, Illumina [33811881] (imputed)	N
1486	chr8	118185732	118185733	rs11558471	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting glucose	73,089 European ancestry women	NA	8q24.11	SLC30A8	rs11558471-A	0.671211	1E-24		0.031927	[0.026-0.038] unit increase	Affymetrix, Illumina [8700000] (imputed)	N
1486	chr8	118185732	118185733	rs11558471	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting glucose	67,506 European ancestry men	NA	8q24.11	SLC30A8	rs11558471-A	0.671211	4E-11		0.021848	[0.015-0.028] unit increase	Affymetrix, Illumina [8700000] (imputed)	N
1486	chr8	118185732	118185733	rs11558471	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting glucose	151,188 European ancestry individuals	NA	8q24.11	SLC30A8	rs11558471-A	0.671211	5E-35		0.027144	[0.023-0.031] unit increase	Affymetrix, Illumina [8700000] (imputed)	N
1486	chr8	118185732	118185733	rs11558471	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	8q24.11	NR	rs11558471-G	0.3163	4E-98		0.1031	[0.093-0.113] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
1486	chr8	118185732	118185733	rs11558471	32002517	Julienne H	2020-01-24	NAR Genom Bioinform	JASS: command line and web interface for the joint analysis of GWAS results.	Insulin-related traits (multivariate analysis)	62,205 individuals	NA	8q24.11	SLC30A8	rs11558471-?	NR	5E-15				NR [3144808] (imputed)	N
1486	chr8	118185732	118185733	rs11558471	31021400	Masotti M	2019-04-25	Biometrics	Pleiotropy informed adaptive association test of multiple traits using GWAS summary data.	Glycemic traits (pleiotropy)	46,186 European ancestry individuals	NA	8q24.11	SLC30A8	rs11558471-?	NR	6E-12				NR [NR]	N
1486	chr8	118185732	118185733	rs11558471	28898252	Wheeler E	2017-09-12	PLoS Med	Impact of common genetic determinants of Hemoglobin A1c on type 2 diabetes risk and diagnosis in ancestrally diverse populations: A transethnic genome-wide meta-analysis.	Glycated hemoglobin levels	88,355 European ancestry individuals	NA	8q24.11	SLC30A8	rs11558471-A	0.6745	1E-19		0.015	[0.012-0.018] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1486	chr8	118185732	118185733	rs11558471	28898252	Wheeler E	2017-09-12	PLoS Med	Impact of common genetic determinants of Hemoglobin A1c on type 2 diabetes risk and diagnosis in ancestrally diverse populations: A transethnic genome-wide meta-analysis.	Glycated hemoglobin levels	18,472 East Asian ancestry individuals	NA	8q24.11	SLC30A8	rs11558471-A	0.5391	1E-8		0.0213	[0.014-0.029] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1486	chr8	118185732	118185733	rs11558471	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	Fasting plasma glucose	15,226 British ancestry non-diabetics individuals from 6863 families, 948 British ancestry diabetic individuals from 6863 families.	NA	8q24.11	SLC30A8	rs11558471-G	0.3227	5E-13	(Non diabetics)	0.0934751	[0.068-0.119] mmol/L decrease	Illumina [24111857] (imputed)	N
1486	chr8	118185732	118185733	rs11558471	25631608	Wessel J	2015-01-29	Nat Commun	Low-frequency and rare exome chip variants associate with fasting glucose and type 2 diabetes susceptibility.	Fasting blood glucose	50,900 European ancestry non-diabetic individuals, 9,664 African American non-diabetic individuals	NA	8q24.11	SLC30A8	rs11558471-G	0.281391278898959	5E-24		0.03468724	[0.028-0.041] unit decrease	Illumina [197481]	N
1486	chr8	118185732	118185733	rs11558471	23263489	Huyghe JR	2012-12-23	Nat Genet	Exome array analysis identifies new loci and low-frequency variants influencing insulin processing and secretion.	Fasting blood proinsulin levels	up to 8,229 Finnish ancestry non-diabetic individuals	NA	8q24.11	SLC30A8	rs11558471-G	0.398	1E-12		0.036	[0.026-0.046] unit decrease	Illumina [242071]	N
1486	chr8	118185732	118185733	rs11558471	22581228	Manning AK	2012-05-13	Nat Genet	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting blood glucose (BMI interaction)	Up to 58,074 European ancestry individuals	Up tp 38,422 European ancestry individuals	8q24.11	SLC30A8	rs11558471-A	0.6874	3E-20		4.942E-6	[-0.00146-0.00147] unit increase	Affymetrix, Illumina [~ 2400000] (imputed)	N
1486	chr8	118185732	118185733	rs11558471	22581228	Manning AK	2012-05-13	Nat Genet	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting blood glucose	Up to 58,074 European ancestry individuals	Up tp 38,422 European ancestry individuals	8q24.11	SLC30A8	rs11558471-A	0.6786	7E-18		0.0295	[0.023-0.036] unit increase	Affymetrix, Illumina [~ 2400000] (imputed)	N
1486	chr8	118185732	118185733	rs11558471	21873549	Strawbridge RJ	2011-08-26	Diabetes	Genome-wide association identifies nine common variants associated with fasting proinsulin levels and provides new insights into the pathophysiology of type 2 diabetes.	Proinsulin levels	10,701 European ancestry individuals	16,378 European ancestry individuals	8q24.11	SLC30A8	rs11558471-A	0.69	3E-18				Affymetrix, Illumina [~ 2500000] (imputed)	N
1486	chr8	118185732	118185733	rs11558471	20081858	Dupuis J	2010-01-17	Nat Genet	New genetic loci implicated in fasting glucose homeostasis and their impact on type 2 diabetes risk.	Fasting blood glucose	46,186 European ancestry individuals	76,558 European ancestry individuals	8q24.11	SLC30A8	rs11558471-A	0.31	3E-11				Affymetrix, Illumina [~ 2500000] (imputed)	N
1486	chr8	118190619	118190620	rs16889471	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	8q24.11	NR	rs16889471-A	0.2051	9E-6	(EA)	0.0344	[0.019-0.05] unit increase	Illumina [~ 11800000] (imputed)	N
1486	chr8	118191474	118191475	rs35859536	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	33,307 East Asian ancestry individuals	NA	8q24.11	SLC30A8	rs35859536-T	0.4346	2E-12		0.0195	[0.014-0.025] unit decrease	Affymetrix, Illumina [15728197] (imputed)	N
1486	chr8	118191474	118191475	rs35859536	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	8q24.11	SLC30A8	rs35859536-C	0.687976	3E-11		0.0142849	[0.01-0.018] unit increase	Affymetrix [NR] (imputed)	N
1486	chr8	118195933	118195934	rs12156306	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	8q24.11	NR	rs12156306-A	NR	2E-14		0.0269	[0.02-0.034] unit increase	Affymetrix [9000000] (imputed)	N
1486	chr8	118195933	118195934	rs12156306	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	8q24.11	NR	rs12156306-A	NR	2E-9		0.0215	[0.014-0.029] unit increase	Affymetrix [9000000] (imputed)	N
1486	chr8	118204019	118204020	rs9650069	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	8q24.11		rs9650069-T	NR	5E-88		0.0427	[0.039-0.047] unit decrease	Affymetrix, Illumina [20535873] (imputed)	N
1486	chr8	118204019	118204020	rs9650069	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	200,622 European ancestry individuals	NA	8q24.11	SLC30A8	rs9650069-T	0.3206	8E-58		0.0286	[0.025-0.032] unit decrease	Affymetrix, Illumina [34064007] (imputed)	N
1486	chr8	118204019	118204020	rs9650069	33385400	Patrick MT	2020-12-29	J Invest Dermatol	Causal relationship and shared genetic loci between psoriasis and type 2 diabetes through trans-disease meta-analysis.	Psoriasis or type 2 diabetes (trans-disease meta-analysis)	11,024 European ancestry psoriasis cases, 74,124 European ancestry diabetes cases, 840,342 European ancestry controls	NA	8q24.11	NR	rs9650069-C	NR	1E-8		1.07	NR	NR [8016731] (imputed)	N
1486	chr8	118204019	118204020	rs9650069	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	8q24.11	NR	rs9650069-T	0.47	1E-6	(Japanese, Male)	0.024	[0.014-0.034] unit increase	Illumina [6108953] (imputed)	N
1486	chr8	118220269	118220270	rs11774700	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	8q24.11	NR	rs11774700-C	0.309291	7E-13		0.00615518	[0.0044-0.0079] unit increase	Affymetrix [16582909] (imputed)	N
1486	chr8	118220269	118220270	rs11774700	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	8q24.11	NR	rs11774700-C	0.30878700000000003	2E-9		0.00750934	[0.0049-0.0101] unit increase	Affymetrix [16585854] (imputed)	N
1486	chr8	118220269	118220270	rs11774700	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	8q24.11	NR	rs11774700-C	0.309291	7E-7		0.00475816	[0.0028-0.0068] unit increase	Affymetrix [16582965] (imputed)	N
1486	chr8	118220322	118220323	rs2466312	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	8q24.11	NR	rs2466312-T	NR	4E-13		0.0264	[0.019-0.033] unit decrease	Affymetrix [9000000] (imputed)	N
1487	chr8	118263731	118263732	rs1587409	26249676	Wolthusen RP	2015-08-07	World J Biol Psychiatry	Genetic underpinnings of left superior temporal gyrus thickness in patients with schizophrenia.	Left superior temporal gyrus thickness (schizophrenia interaction)	113 schizophrenia cases, 126 controls	NA	8q24.11	SLC30A8	rs1587409-T		2E-7		0.572	[NR] unit decrease	Illumina [1067955] (imputed)	N
1487	chr8	118288746	118288747	rs1499437	34748635	Miranda JP	2021-11-08	J Clin Endocrinol Metab	Genome-Wide Association Study And Polygenic Risk Scores Of Serum Dheas Levels In A Chilean Children Cohort.	DHEAS levels	398 Hispanic or Latin American male individuals	NA	8q24.11	LOC105375716	rs1499437-C	0.49	7E-6		0.08	unit increase	Illumina [5510858] (imputed)	N
1487	chr8	118300174	118300175	rs1499428	30079052	Rujescu D	2018-07-20	Front Neurol	Genome-Wide Association Study in Vestibular Neuritis: Involvement of the Host Factor for HSV-1 Replication.	Vestibular neuritis	131 European ancestry cases, 2,609 German ancestry controls	NA	8q24.11	SLC30A8, MED30	rs1499428-?	0.138	4E-8		2.4875622	[1.8-3.45]	Affymetrix, Illumina [7813927] (imputed)	N
1487	chr8	118307004	118307005	rs1793704	34075027	Gonda X	2021-06-01	Transl Psychiatry	Genetic underpinnings of affective temperaments: a pilot GWAS investigation identifies a new genome-wide significant SNP for anxious temperament in ADGRB3 gene.	Hyperthymic temperament	775 European ancestry individuals	NA	8q24.11		rs1793704-T	NR	9E-6		0.03791	unit increase	Illumina [2550710] (imputed)	N
1488	chr8	118377145	118377153	rs141211722	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Plasma Blast-Plasma Cell Absolute Count	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	8q24.11		rs141211722-T	0.23921	4E-8		0.1574	[0.1-0.21] unit decrease	Illumina [18238619] (imputed)	N
1488	chr8	118404671	118404672	rs80244329	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	8q24.11	SLC30A8	rs80244329-G	0.9781	7E-6		1.11	[1.06-1.17]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1488	chr8	118443512	118443513	rs138986247	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	8q24.11	NR	rs138986247-G	1.0	2E-6		1.05	[-1.008-3.108]	Affymetrix [at least 143006] (imputed)	N
1488	chr8	118450821	118450822	rs9656919	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8q24.11	SLC30A8	rs9656919-?	NR	8E-6	(indole-3-propionate)	0.5353724	[0.3-0.77] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1488	chr8	118478846	118478847	rs7015627	32047095	Traglia M	2020-02-11	Genetics	Genetic Contributions to Maternal and Neonatal Vitamin D Levels.	Midgestational total 25-hydroxyvitamin D levels (fetal genetic effect)	269 European ancestry individuals, 323 Hispanic individuals, 115 East Asian ancestry individuals, 23 African American individuals, 23 South Asian ancestry individuals, 23 individuals	NA	8q24.11	MED30	rs7015627-?	NR	2E-6		0.66	[0.39-0.93] unit increase	Affymetrix [622716]	N
1489	chr8	118489227	118489228	rs1352557	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	8q24.11	NR	rs1352557-?	NR	3E-36				Affymetrix [NR]	N
1489	chr8	118549375	118549376	rs17667932	29212154	Lin E	2017-09-16	Oncotarget	Detection of susceptibility loci on APOA5 and COLEC12 associated with metabolic syndrome using a genome-wide association study in a Taiwanese population.	Fasting blood glucose	1,811 Taiwanese Han Chinese individuals with metabolic syndrome, 8,489 Taiwanese Han Chinese ancestry individuals without metabolic syndrome	NA	8q24.11	MED30	rs17667932-?		2E-14	(additive)	30.29	[22.52-38.06] unit increase	Affymetrix [583469]	N
1489	chr8	118549375	118549376	rs17667932	22446961	Lee YC	2012-03-25	Nat Genet	Two new susceptibility loci for Kawasaki disease identified through genome-wide association analysis.	Kawasaki disease	622 Han Chinese ancestry cases, 1,107 Han Chinese ancestry controls	261 Han Chinese ancestry cases, 550 Han Chinese ancestry controls	8q24.11	MED30	rs17667932-G	0.019	5E-7		2.368	[1.680-3.337]	Affymetrix [716935]	N
1489	chr8	118600121	118600122	rs1351356	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	8q24.11	NR	rs1351356-T	NR	4E-6		1.06	[NR]	Illumina [7158791] (imputed)	N
1489	chr8	118601732	118601733	rs151010623	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8q24.11	NR	rs151010623-T	0.01045	2E-8	(F2)	0.036	NR unit increase	Illumina [1671387] (imputed)	N
1489	chr8	118611633	118611634	rs17746363	30946739	Hu B	2019-04-04	PLoS Genet	Genome-wide association study reveals sex-specific genetic architecture of facial attractiveness.	Facial attractiveness (female raters)	2,062 European ancestry female individuals	NA	8q24.11	MED30, EXT1	rs17746363-T	0.205	4E-7		0.26	[0.16-0.36] unit decrease	Illumina [7251583] (imputed)	N
1490	chr8	118626278	118626279	rs10100465	27976721	Wang Z	2016-12-15	Nat Commun	A large-scale genome-wide association and meta-analysis identified four novel susceptibility loci for leprosy.	Leprosy	2,743 Chinese ancestry cases, 3,573 Chinese ancestry controls	5,413 Han Chinese ancestry cases, 12,037 Han Chinese ancestry controls	8q24.11	MED30	rs10100465-G	0.71	3E-11		1.1764705		Illumina [5546030] (imputed)	N
1490	chr8	118651388	118651389	rs189087047	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	8q24.11	NR	rs189087047-?	NR	8E-8	(Latino)	1.6762	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1490	chr8	118651388	118651389	rs189087047	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	8q24.11	NR	rs189087047-?	NR	3E-6	(Latino)	1.3249	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1490	chr8	118707725	118707726	rs3115775	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in obese individuals	4,613 European ancestry male individuals, 4,690 European ancestry female individuals, 142 European ancestry individuals	NA	8q24.11	MED30, EXT1	rs3115775-C	0.07	8E-6	(men)	0.18	[0.1-0.26] kg/m2 decrease	Affymetrix, Illumina [at least 188473] (imputed)	N
1491	chr8	118758315	118758316	rs74701635	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	8q24.11	MED30, EXT1	rs74701635-?		2E-9	(African)			Affymetrix, Illumina [18800000] (imputed)	N
1491	chr8	118758315	118758316	rs74701635	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (current vs non-current) interaction (1df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	8q24.11	MED30, EXT1	rs74701635-T	0.0156	2E-9	(African)	19.2	unit decrease	Affymetrix, Illumina [18800000] (imputed)	N
1491	chr8	118762435	118762436	rs2280828	29206233	Shendre A	2017-12-04	PLoS One	Genome-wide admixture and association study of subclinical atherosclerosis in the Women's Interagency HIV Study (WIHS).	Common carotid intima-media thickness in HIV infection	682 Black non-Hispanic HIV-positive women	NA	8q24.11	EXT1, MED30	rs2280828-C	NR	3E-7		0.02708	[NR] unit decrease	Illumina [1124301]	N
1491	chr8	118762435	118762436	rs2280828	29206233	Shendre A	2017-12-04	PLoS One	Genome-wide admixture and association study of subclinical atherosclerosis in the Women's Interagency HIV Study (WIHS).	Common carotid intima-media thickness	682 Black non-Hispanic HIV-positive women, 288 Black non-Hispanic HIV-negative women	NA	8q24.11	MED30, EXT1	rs2280828-C	NR	8E-7		0.02163	[NR] unit decrease	Illumina [1124301]	N
1491	chr8	118827838	118827839	rs11989122	19893584	Kim JJ	2009-11-06	J Hum Genet	Identification of 15 loci influencing height in a Korean population.	Height	8,842 Korean ancestry individuals	NA	8q24.11	EXT1	rs11989122-T	0.48	6E-6		0.36	[NR] cm decrease	Affymetrix [334546]	N
1491	chr8	118828897	118828898	rs142459060	30093612	O'Mara TA	2018-08-09	Nat Commun	Identification of nine new susceptibility loci for endometrial cancer.	Endometrial cancer (Non-endometrioid histology)	1,230 European ancestry cases, 35,447 European ancestry controls	NA	8q24.11	EXT1	rs142459060-C	0.03174900000000003	6E-7		1.73	[1.40-2.15]	Affymetrix, Illumina [~ 11700000] (imputed)	N
1491	chr8	118846386	118846387	rs4546690	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	8q24.11		rs4546690-?	NR	6E-8				NR [~ 8900000] (imputed)	N
1491	chr8	118853828	118853829	rs10103003	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	8q24.11	EXT1	rs10103003-C	0.4553	1E-8		0.011591638	[0.0076-0.0156] unit increase	Affymetrix [up to 18485882] (imputed)	N
1491	chr8	118856306	118856307	rs17430287	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	8q24.11	Intergenic	rs17430287-A	0.7917	4E-8		0.0153	[0.0098-0.0208] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1491	chr8	118863855	118863855	rs140688232	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	8q24.11	NR	rs140688232-?		2E-10		0.0178079	[0.012-0.023] unit decrease	Affymetrix [19400418] (imputed)	N
1491	chr8	118867692	118867693	rs72673939	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	8q24.11		rs72673939-C	0.21	3E-11		6.67	z score increase	Affymetrix [9061022] (imputed)	N
1491	chr8	118867692	118867693	rs72673939	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	8q24.11	NR	rs72673939-C	0.1809	2E-9				NR [9056863] (imputed)	N
1491	chr8	118881207	118881208	rs17450716	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	8q24.11	NR	rs17450716-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
1491	chr8	118881865	118881866	rs10103490	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	8q24.11	NR	rs10103490-C	0.3554	4E-6	(EA)	0.0319	[0.018-0.045] unit decrease	Illumina [~ 11800000] (imputed)	N
1492	chr8	118884378	118884379	rs72673947	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		8q24.11	EXT1	rs72673947-A	0.893101	3E-10		0.0140208	[0.0096-0.0184] unit decrease	Affymetrix [12370749]	N
1492	chr8	118884378	118884379	rs72673947	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	8q24.11	NR	rs72673947-?	NR	4E-13				Affymetrix [~ 8270000] (imputed)	N
1492	chr8	118884378	118884379	rs72673947	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	8q24.11		rs72673947-?	NR	6E-14				NR [~ 8900000] (imputed)	N
1492	chr8	118884378	118884379	rs72673947	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	8q24.11	NA	rs72673947-A	0.8902	4E-13		0.0223	[0.016-0.028] unit decrease	NR [~ 27400000] (imputed)	N
1492	chr8	118884378	118884379	rs72673947	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	8q24.11	NA	rs72673947-A	0.8902	4E-13		0.0223	[0.016-0.028] unit decrease	NR [~ 27400000] (imputed)	N
1492	chr8	118901927	118901928	rs13280053	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	8q24.11	Intergenic	rs13280053-T	0.4821	5E-8	(MTAG)	0.0098	[0.0063-0.0133] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1492	chr8	118902808	118902809	rs7814022	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	8q24.11	EXT1	rs7814022-A	NR	9E-9		5.756	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1492	chr8	118903023	118903024	rs9692869	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	8q24.11	Intergenic	rs9692869-T	0.5729	5E-11	(MTAG)	0.0152	[0.011-0.02] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1492	chr8	118907970	118907971	rs7841914	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	8q24.11		rs7841914-A	0.42	3E-23		9.95	z score increase	Affymetrix [9061022] (imputed)	N
1492	chr8	118907970	118907971	rs7841914	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	8q24.11		rs7841914-A	0.42	3E-12		6.97	z score increase	Affymetrix [9061022] (imputed)	N
1492	chr8	118907970	118907971	rs7841914	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	8q24.11	NR	rs7841914-A	0.4273	5E-14				NR [9056863] (imputed)	N
1492	chr8	118909259	118909260	rs7459527	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	8q24.11	EXT1	rs7459527-A	0.093	2E-6	(Cortisol )	0.03	[NR] ng/mL increase	Illumina [899892]	N
1492	chr8	118932886	118932887	rs4298514	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	8q24.11	Intergenic	rs4298514-T	0.7077	7E-12	(MTAG)	0.0124	[0.0089-0.0159] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1492	chr8	118932886	118932887	rs4298514	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	8q24.11		rs4298514-T	0.6986	1E-11		0.0104	[0.0075-0.0133] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1492	chr8	118932886	118932887	rs4298514	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	8q24.11	Intergenic	rs4298514-T	0.6986	3E-14	(MTAG)	0.0108	[0.0081-0.0135] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1492	chr8	118936205	118936206	rs998956939	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Epilepsy	4,382 European ancestry cases, 453,928 European ancestry controls, 2,466 East Asian ancestry cases, 175,788 East Asian ancestry controls	NA	8q24.11		rs998956939-G	NR	4E-8		1.0172	[0.65-1.38] unit increase	Affymetrix, Illumina [25841675] (imputed)	N
1492	chr8	118936205	118936206	rs998956939	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Epilepsy	2,466 East Asian ancestry cases, 175,788 East Asian ancestry controls	NA	8q24.11		rs998956939-G	0.008794673	4E-8		1.0171559	[0.65-1.38] unit increase	Illumina [13429903] (imputed)	N
1493	chr8	119019737	119019738	rs9643120	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	8q24.11		rs9643120-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1493	chr8	119034915	119034916	rs2168667	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	8q24.11	NR	rs2168667-?	NR	2E-6		4.716	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1493	chr8	119094918	119094919	rs7835763	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder	6,197 European ancestry cases, 7,377 European ancestry controls, 1,190 cases, 1,190 controls	8,266 European ancestry cases, 147,562 European ancestry controls, 886 cases, 1,105 controls	8q24.11	EXT1	rs7835763-A		2E-6		1.1	[1.06-1.14]	Affymetrix, Illumina [6695386] (imputed)	N
1493	chr8	119109827	119109828	rs17506336	30219690	Heinzman JT	2018-09-07	J Affect Disord	GWAS and systems biology analysis of depressive symptoms among smokers from the COPDGene cohort.	Depression in smokers	1,622 European ancestry cases, 391 African American cases, 4,954 European ancestry controls, 2,749 African American controls	NA	8q24.11	EXT1	rs17506336-C	0.9017	2E-6	(AA)			Illumina [NR] (imputed)	N
1493	chr8	119111235	119111236	rs897830	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	91,908 East Asian ancestry individuals	NA	8q24.11		rs897830-T	0.55503	3E-22		0.0439285	[0.035-0.053] unit decrease	Illumina [13469940] (imputed)	N
1493	chr8	119113133	119113134	rs7008536	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	81,042 East Asian ancestry individuals	NA	8q24.11	NR	rs7008536-C	0.434552	8E-20		0.04568	[0.036-0.055] SD units increase	Affymetrix, Illumina [16286709] (imputed)	N
1493	chr8	119113133	119113134	rs7008536	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q24.11	NR	rs7008536-A	0.609119	3E-31				Affymetrix, Illumina [19905671] (imputed)	N
1493	chr8	119113133	119113134	rs7008536	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	White blood cell count (basophil)	62,076 Japanese ancestry individuals	NA	8q24.11	EXT1	rs7008536-?	NR	4E-16		0.04662	[0.035-0.058] unit decrease novel	Illumina [6108953] (imputed)	N
1493	chr8	119114109	119114110	rs4876400	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	8q24.11	NR	rs4876400-G	0.626316	6E-16		0.017086	[0.013-0.021] SD unit decrease	Affymetrix, Illumina [50036608] (imputed)	N
1493	chr8	119121692	119121696	rs141769701	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	349,856 European ancestry individuals, 91,908 East Asian ancestry individuals	NA	8q24.11		rs141769701-A	NR	3E-22		0.044	[0.035-0.053] unit decrease	Affymetrix, Illumina [20529536] (imputed)	N
1493	chr8	119133622	119133623	rs2445922	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	8q24.11		rs2445922-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1495	chr8	119348494	119348495	rs6994270	29921221	Cha S	2018-06-19	BMC Genomics	Identification of five novel genetic loci related to facial morphology by genome-wide association studies.	Eye morphology	5,643 Korean ancestry individuals	1,926 Korean ancestry individuals	8q24.12	SAMD12	rs6994270-G	0.15	3E-7	(Left eye angle of en-ps-ex)	1.007	[NR] unit decrease	Affymetrix [311944]	N
1495	chr8	119391408	119391409	rs17749211	23412934	Gourraud PA	2013-02-13	Brain	A genome-wide association study of brain lesion distribution in multiple sclerosis.	Multiple sclerosis	284 European ancestry individuals		8q24.12	SAMD12	rs17749211-?		8E-6	(Cluxel size)			Illumina [208975]	N
1496	chr8	119446195	119446196	rs7813395	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Osteoprotegerin levels	21,758 European ancestry individuals	9,173 individuals	8q24.12		rs7813395-A	0.64	1E-18		0.0733	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1496	chr8	119473788	119473789	rs34338452	32119686	Dahlin A	2020-03-02	PLoS One	Genome-wide interaction study reveals age-dependent determinants of responsiveness to inhaled corticosteroids in individuals with asthma.	Adverse response to inhaled corticosteroid treatment x age interaction in asthma	407 European ancestry cases, 376 European ancestry controls	287 European ancestry cases, 251 European ancestry controls	8q24.12	SAMD12	rs34338452-A	NR	4E-7		2.24	[1.57-3.19]	Affymetrix, Illumina [8589102] (imputed)	N
1496	chr8	119479123	119479124	rs10110194	27864402	Harris SE	2017-06-01	Int J Epidemiol	Molecular genetic contributions to self-rated health.	Self-rated health	111,749 British ancestry individuals	NA	8q24.12	SAMD12	rs10110194-?	NR	5E-8		0.025	[NR] unit increase	Affymetrix [~ 17300000] (imputed)	N
1496	chr8	119483315	119483316	rs13281564	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	8q24.12		rs13281564-A	0.5129	4E-10		0.0088	[0.0061-0.0115] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1496	chr8	119483315	119483316	rs13281564	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	8q24.12	Intergenic	rs13281564-A	0.5129	1E-11	(MTAG)	0.0089	[0.0064-0.0114] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1496	chr8	119496570	119496571	rs9656929	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	8q24.12	Intergenic	rs9656929-A	0.5199	8E-9	(MTAG)	0.0095	[0.0062-0.0128] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1496	chr8	119498423	119498424	rs10282989	30787463	Escala-Garcia M	2019-02-21	Br J Cancer	Genome-wide association study of germline variants and breast cancer-specific mortality.	Breast cancer specific mortality in breast cancer	7,697 European ancestry cases, 88,964 European ancestry controls	NA	8q24.12	NR	rs10282989-?	NR	5E-6		1.2000822	[1.11-1.30]	Affymetrix, Illumina [~ 10400000] (imputed)	N
1496	chr8	119511031	119511032	rs2515055	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	8q24.12	SAMD12	rs2515055-T	0.43	2E-8		0.0068	[0.0044-0.0092] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
1497	chr8	119625148	119625149	rs2514594	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	8q24.12	SAMD12	rs2514594-A	0.9064905	2E-11		0.02557138	[0.018-0.033] unit increase	Affymetrix [93095623] (imputed)	N
1497	chr8	119625148	119625149	rs2514594	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	8q24.12		rs2514594-?	NR	8E-10				NR [~ 8900000] (imputed)	N
1497	chr8	119668713	119668714	rs568977055	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-hip ratio	1,254 whole genome sequenced European ancestry individuals, 3,071 whole genome sequenced individuals, 29,723 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,053 Mylopotamos (founder/genetic isolate) individuals, 879 Pomak (founder/genetic isolate) individuals	206,053 European ancestry individuals	8q24.12	SAMD12-AS1	rs568977055-A	0.991	5E-6		0.6866	[0.39-0.98] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1498	chr8	119750651	119750652	rs78399257	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Pancreatic cancer	768 White British ancestry cases, 264,559 White British ancestry controls	NA	8q24.12		rs78399257-?	NR	6E-6		1.6314	[1.42-1.84]	NR [663102]	N
1498	chr8	119757826	119757827	rs764982	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	8q24.12		rs764982-?	NR	7E-22		0.0229644	[0.018-0.028] unit increase	Affymetrix [20259828] (imputed)	N
1498	chr8	119766193	119766194	rs11988997	23143602	Whitcomb DC	2012-11-11	Nat Genet	Common genetic variants in the CLDN2 and PRSS1-PRSS2 loci alter risk for alcohol-related and sporadic pancreatitis.	Pancreatitis	676 European ancestry cases, 4,507 European ancestry controls	910 European ancestry cases, 4,170 European ancestry controls	8q24.12	NR	rs11988997-T	0.071	6E-6		1.359	[1.21-1.50]	Illumina [625739]	N
1498	chr8	119773437	119773438	rs4876858	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	8q24.12	SAMD12-AS1	rs4876858-G	0.204306	2E-17		0.0203045	[0.016-0.025] unit increase	NR [13737936] (imputed)	N
1498	chr8	119789778	119789779	rs78736097	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	8q24.12	NR	rs78736097-T	NR	2E-9		0.0317	[0.021-0.042] unit increase	Affymetrix [9000000] (imputed)	N
1499	chr8	119809321	119809322	rs80294347	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	8q24.12	NR	rs80294347-A	NR	5E-21		0.0429	[0.034-0.052] unit increase	Affymetrix [9000000] (imputed)	N
1499	chr8	119828648	119828649	rs76124971	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	8q24.12	NR	rs76124971-A	NR	4E-10		0.0335	[0.023-0.044] unit decrease	Affymetrix [9000000] (imputed)	N
1499	chr8	119830679	119830680	rs903614	23144326	Kim DK	2012-11-09	Am J Respir Crit Care Med	Genome-wide association analysis of blood biomarkers in chronic obstructive pulmonary disease.	Chronic obstructive pulmonary disease-related biomarkers	Up to 1,951 European ancestry smokers	NA	8q24.12	KB-1137H10.1	rs903614-C	0.1	3E-6	(IL8)			Illumina [588352]	N
1499	chr8	119839849	119839850	rs3134079	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	8q24.12	NR	rs3134079-C	NR	7E-10		0.0174	[0.012-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
1499	chr8	119848955	119848956	rs1493935	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	8q24.12	intergenic	rs1493935-A	0.6692	1E-9		0.023133	[0.016-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
1499	chr8	119872997	119872998	rs1353171	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	8q24.12	TNFRSF11B	rs1353171-G	0.328292	7E-15		0.015752	[0.012-0.02] unit decrease	NR [13737936] (imputed)	N
1499	chr8	119886100	119886101	rs3134095	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Osteoprotegerin levels	21,758 European ancestry individuals	9,173 individuals	8q24.12		rs3134095-T	0.056	1E-15		0.1258	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1499	chr8	119886922	119886923	rs2055101	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	8q24.12	NR	rs2055101-T	0.527164	2E-12		0.013407	[0.0097-0.0171] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1499	chr8	119889281	119889282	rs75749655	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	8q24.12	NR	rs75749655-A	NR	9E-17		0.0312	[0.024-0.038] unit increase	Affymetrix [9000000] (imputed)	N
1499	chr8	119901441	119901442	rs117108011	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	8q24.12		rs117108011-?	NR	2E-37		0.100049	[0.084-0.116] unit decrease	Affymetrix [20259828] (imputed)	N
1499	chr8	119901441	119901442	rs117108011	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	8q24.12	TNFRSF11B	rs117108011-A	0.9838	1E-13		0.0978567	[0.071-0.125] unit decrease	NR [17166351] (imputed)	N
1499	chr8	119901441	119901442	rs117108011	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	8q24.12	TNFRSF11B	rs117108011-A	0.983684	5E-11	(men)	0.131673	[0.09-0.173] unit decrease	NR [17166351] (imputed)	N
1499	chr8	119915104	119915105	rs77255899	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Osteoprotegerin levels	21,758 European ancestry individuals	9,173 individuals	8q24.12		rs77255899-A	0.038	6E-12		0.1676	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1499	chr8	119917641	119917642	rs117204589	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	8q24.12	TNFRSF11B	rs117204589-T	0.983845	6E-35		0.0906821	[0.076-0.105] unit decrease	NR [13737936] (imputed)	N
1499	chr8	119917641	119917642	rs117204589	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	8q24.12		rs117204589-?	NR	3E-42				NR [~ 8900000] (imputed)	N
1499	chr8	119917641	119917642	rs117204589	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	8q24.12		rs117204589-?	NR	5E-39		0.101216	[0.086-0.117] unit decrease	Affymetrix [20259828] (imputed)	N
1499	chr8	119923364	119923365	rs7813157	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	8q24.12		rs7813157-?	NR	5E-22		0.0445777	[0.035-0.054] unit decrease	Affymetrix [20259828] (imputed)	N
1499	chr8	119923872	119923873	rs4355801	18455228	Richards JB	2008-04-29	Lancet	Bone mineral density, osteoporosis, and osteoporotic fractures: a genome-wide association study.	Bone mineral density	2,094 European ancestry female individuals	6,463 European ancestry individuals	8q24.12	TNFRSF11B	rs4355801-A	0.53	8E-10		0.09	[NR] SD decrease	Illumina [314075]	N
1499	chr8	119926988	119926989	rs4876868	32963334	Wei XT	2020-09-22	Eur J Hum Genet	Pleiotropic genomic variants at 17q21.31 associated with bone mineral density and body fat mass: a bivariate genome-wide association analysis.	Bone mineral density (hip)	10,070 European ancestry individuals, 1,623 Han Chinese ancestry individuals, 843 African American individuals, 445 Hispanic individuals	NA	8q24.12	NR	rs4876868-?		1E-10		0.1	[0.061-0.139] unit increase	Affymetrix, Illumina [2374420] (imputed)	N
1499	chr8	119926988	119926989	rs4876868	32929176	Feng GJ	2020-09-14	J Hum Genet	Identification of pleiotropic loci underlying hip bone mineral density and trunk lean mass.	Bone mineral density	8,508 European ancestry individuals, 1,539 Han Chinese ancestry individuals, 843 African American individuals, 445 Hispanic individuals	215,234 European ancestry individuals	8q24.12	NR	rs4876868-A	0.18	9E-10		0.014	[0.01-0.018] unit decrease	Affymetrix [12061510] (imputed)	N
1500	chr8	119931023	119931024	rs73319666	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (90 or 130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	8q24.12	intergenic	rs73319666-?	NR	3E-6		0.158	[0.074-0.242] unit decrease	Illumina [at least 13000000] (imputed)	N
1500	chr8	119931023	119931024	rs73319666	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	8q24.12	intergenic	rs73319666-?	NR	5E-6		0.152	[0.066-0.238] unit decrease	Illumina [at least 13000000] (imputed)	N
1500	chr8	119932740	119932741	rs72680380	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q24.12	NR	rs72680380-A	0.431449	4E-12				Affymetrix, Illumina [23472807] (imputed)	N
1500	chr8	119932888	119932889	rs138038919	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	8q24.12	TNFRSF11B	rs138038919-T	0.187636	2E-10		0.018622914	[0.013-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1500	chr8	119933039	119933041	rs72351236	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	8q24.12		rs72351236-T	NR	2E-8		0.0136	[0.0089-0.0183] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
1500	chr8	119939858	119939859	rs7834745	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	8q24.12	TNFRSF11B	rs7834745-G	0.187512	6E-13		0.020555226	[0.015-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1500	chr8	119939858	119939859	rs7834745	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	8q24.12	TNFRSF11B	rs7834745-G	0.1897	7E-9		0.02658321	[0.018-0.036] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1500	chr8	119939858	119939859	rs7834745	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	8q24.12	TNFRSF11B	rs7834745-G	0.1898	9E-10		0.02803351	[0.019-0.037] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1500	chr8	119942829	119942830	rs6469787	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q24.12	NR	rs6469787-C	0.231936	1E-13				Affymetrix, Illumina [19872809] (imputed)	N
1500	chr8	119946655	119946656	rs7010267	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density (age 45-60)	18,805 European individuals	NA	8q24.12	NR	rs7010267-A	0.4438	3E-15		0.0838	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
1500	chr8	119951899	119951900	rs1032129	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	8q24.12	TNFRSF11B	rs1032129-C	0.353542	6E-10		0.05929091	[0.041-0.078] unit decrease	Affymetrix [7288503] (imputed)	N
1500	chr8	119951899	119951900	rs1032129	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	8q24.12		rs1032129-?	NR	3E-10				NR [~ 8900000] (imputed)	N
1500	chr8	119951899	119951900	rs1032129	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Autoimmune traits	approximately 459,000 European ancestry individuals	NA	8q24.12		rs1032129-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1500	chr8	119952749	119952750	rs6469788	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	8q24.12	TNFRSF11B	rs6469788-A	0.455536	4E-128		0.00543394	[0.005-0.0059] unit decrease	Affymetrix [13995440] (imputed)	N
1500	chr8	119955110	119955111	rs6415470	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	8q24.12		rs6415470-A	NR	6E-113		0.0463	[0.042-0.05] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
1500	chr8	119959924	119959925	rs11573824	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	8q24.12	TNFRSF11B	rs11573824-T	0.54	1E-84		19.5	z-score increase	Affymetrix [4311822] (imputed)	N
1500	chr8	119959924	119959925	rs11573824	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum alkaline phosphatase levels	105,030 Japanese ancestry individuals	NA	8q24.12	TNFRSF11B	rs11573824-?	NR	2E-22		0.04675	[0.037-0.056] unit increase novel	Illumina [6108953] (imputed)	N
1500	chr8	119960660	119960661	rs6469789	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	118,886 East Asian ancestry individuals	NA	8q24.12		rs6469789-G	0.709693	5E-26		0.0449373	[0.037-0.053] unit increase	Illumina [13474352] (imputed)	N
1500	chr8	119964282	119964283	rs2073617	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls, 2,149 African ancestry cases, 6,055 African ancestry controls, 1,239 Japanese ancestry cases, 3,976 Japanese ancestry controls, 606 Latino cases, 792 Latino controls	NA	8q24.12	TNFRSF11B, SAMD12, COLEC10	rs2073617-A	0.37	5E-6	(Latino)	1.46	[1.24-1.71]	Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
1500	chr8	119964282	119964283	rs2073617	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	8q24.12	NR	rs2073617-?	NR	3E-6				Illumina [at least 7383741] (imputed)	N
1500	chr8	119964987	119964988	rs3134069	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	8q24.12	NR	rs3134069-C	NR	1E-12		0.0375	[0.027-0.048] unit increase	Affymetrix [9000000] (imputed)	N
1500	chr8	119966332	119966333	rs1385504	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	8q24.12	COLEC10	rs1385504-T	0.857126	4E-12		0.0186882	[0.013-0.024] unit increase	NR [13737936] (imputed)	N
1500	chr8	119968974	119968975	rs4242592	31666285	Olafsson S	2019-10-30	Cancer Epidemiol Biomarkers Prev	Common and rare sequence variants influencing tumor biomarkers in blood.	Serum alkaline phosphatase levels	162,774 Icelandic ancestry individuals	NA	8q24.12	TNFRSF11B	rs4242592-T	0.479	3E-10		0.03	[0.03-0.02] unit decrease	Illumina [NR] (imputed)	N
1500	chr8	119972973	119972974	rs12681644	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	8q24.12	NR	rs12681644-T	0.211927	1E-15		0.019435	[0.015-0.024] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
1500	chr8	119972973	119972974	rs12681644	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	8q24.12		rs12681644-?	NR	4E-10				NR [~ 8900000] (imputed)	N
1500	chr8	119974707	119974708	rs1385499	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	8q24.12	NR	rs1385499-?	NR	4E-10				Affymetrix [~ 8270000] (imputed)	N
1500	chr8	119976255	119976256	rs1485303	31170332	Zheng J	2019-08-02	J Bone Miner Res	Mendelian Randomization Analysis Reveals a Causal Influence of Circulating Sclerostin Levels on Bone Mineral Density and Fractures.	Serum sclerostin levels	10,584 European ancestry individuals	NA	8q24.12	TNFRSF11B	rs1485303-G	0.568	8E-8		0.074	[0.047-0.101] NR increase	NR [5245208] (imputed)	N
1500	chr8	119976255	119976256	rs1485303	27476799	Nielson CM	2016-09-06	J Bone Miner Res	Novel Genetic Variants Associated With Increased Vertebral Volumetric BMD, Reduced Vertebral Fracture Risk, and Increased Expression of SLC1A3 and EPHB2.	Lumbar spine bone mineral density (trabecular)	12,287 European ancestry individuals	2,987 individuals	8q24.12	TNFRSF11B	rs1485303-A	0.44	5E-9		0.057	[0.033-0.081] unit decrease	Affymetrix, Illumina [up to 37790451] (imputed)	N
1500	chr8	119976255	119976256	rs1485303	27476799	Nielson CM	2016-09-06	J Bone Miner Res	Novel Genetic Variants Associated With Increased Vertebral Volumetric BMD, Reduced Vertebral Fracture Risk, and Increased Expression of SLC1A3 and EPHB2.	Lumbar spine bone mineral density (integral)	11,080 European ancestry individuals	NA	8q24.12	TNFRSF11B	rs1485303-A	0.44	8E-6		0.054	[0.03-0.078] unit decrease	Affymetrix, Illumina [up to 2659730] (imputed)	N
1500	chr8	119976541	119976542	rs7839059	27311723	Pei YF	2016-06-16	Osteoporos Int	Association of 3q13.32 variants with hip trochanter and intertrochanter bone mineral density identified by a genome-wide association study.	Bone mineral density (hip)	6,912 European ancestry individuals	845 African American individuals, 446 Hispanic individuals, 971 European ancestry individuals	8q24.12	TNFRSF11B	rs7839059-C	NR	7E-9	(trochanter)	0.1	[NR] unit decrease	Affymetrix [6879267] (imputed)	N
1500	chr8	119976541	119976542	rs7839059	23437003	Paternoster L	2013-02-21	PLoS Genet	Genetic determinants of trabecular and cortical volumetric bone mineral densities and bone microstructure.	Bone mineral density	up to 5,878 European ancestry individuals	up to 1,052 European ancestry individuals	8q24.12	TNFRSF11B	rs7839059-A	0.34	1E-10	(Cortical vBMD)	0.1	[0.061-0.139] unit decrease	Illumina [2401124] (imputed)	N
1500	chr8	119977336	119977337	rs12679857	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	8q24.12		rs12679857-G	NR	7E-10		0.057	[0.039-0.075] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1500	chr8	119977336	119977337	rs12679857	21980299	Bradfield JP	2011-09-29	PLoS Genet	A genome-wide meta-analysis of six type 1 diabetes cohorts identifies multiple associated loci.	Type 1 diabetes	9,934 European ancestry cases, 16,956 European ancestry controls	1,120 European ancestry affected trios	8q24.12	TNFRSF11B	rs12679857-?	0.69	4E-7		1.2	[NR]	Affymetrix, Illumina [~ 2540000] (imputed)	N
1500	chr8	119977791	119977792	rs2062375	20548944	Hsu YH	2010-06-10	PLoS Genet	An integration of genome-wide association study and gene expression profiling to prioritize the discovery of novel susceptibility Loci for osteoporosis-related traits.	Osteoporosis-related phenotypes	2,038 European ancestry female individuals, 1,531 European ancestry male individuals	5,595 European ancestry female individuals, 2,126 European ancestry male individuals	8q24.12	TNFRSF11B	rs2062375-G	0.45	3E-11	(LS BMD, women)	0.14	[NR] g/cm2 increase	Affymetrix [433510]	N
1500	chr8	119980068	119980069	rs6992497	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SOST	5,367 Icelandic ancestry individuals	NA	8q24.12		rs6992497-A	0.4709	3E-19		0.143939	[0.11-0.18] unit increase	Illumina [7506463] (imputed)	N
1500	chr8	119980068	119980069	rs6992497	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Serum alkaline phosphatase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	8q24.12	COLEC10	rs6992497-?		1E-27		0.0463	[0.038-0.055] unit increase	Illumina [31500000] (imputed)	N
1500	chr8	119990799	119990799	rs112018337	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Nasal polyps	5,093 European ancestry cases, 444,966 European ancestry controls, 160 East Asian ancestry cases, 151,846 East Asian ancestry controls	NA	8q24.12		rs112018337-TTTTA	NR	5E-9		0.1181	[0.079-0.158] unit decrease	Affymetrix, Illumina [25837843] (imputed)	N
1500	chr8	120007419	120007420	rs2062377	23437003	Paternoster L	2013-02-21	PLoS Genet	Genetic determinants of trabecular and cortical volumetric bone mineral densities and bone microstructure.	Bone mineral density	up to 5,878 European ancestry individuals	up to 1,052 European ancestry individuals	8q24.12	TNFRSF11B	rs2062377-A	0.57	1E-7	(Cortical vBMD)	0.08	[0.041-0.119] unit decrease	Illumina [2401124] (imputed)	N
1500	chr8	120007419	120007420	rs2062377	22504420	Estrada K	2012-04-15	Nat Genet	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Lumbar spine bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	8q24.12	TNFRSF11B	rs2062377-A	0.57	3E-39		0.08	[NR] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1500	chr8	120007419	120007420	rs2062377	19801982	Rivadeneira F	2009-10-04	Nat Genet	Twenty bone-mineral-density loci identified by large-scale meta-analysis of genome-wide association studies.	Bone mineral density (spine)	19,195 European ancestry individuals	NA	8q24.12	TNFRSF11B	rs2062377-T	0.44	4E-16		0.09	[0.07-0.11] s.d. increase	Affymetrix, Illumina [2543686] (imputed)	N
1500	chr8	120012699	120012700	rs11995824	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density (age over 60)	22,504 European ancestry and African American individuals	NA	8q24.12	NR	rs11995824-C	0.4289	3E-16		0.0806	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
1500	chr8	120012699	120012700	rs11995824	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	8q24.12	NR	rs11995824-C	0.4416	5E-32	(European)	0.074	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
1500	chr8	120012699	120012700	rs11995824	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	8q24.12	NR	rs11995824-C	0.4319	1E-31		0.0675	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
1500	chr8	120012699	120012700	rs11995824	19801982	Rivadeneira F	2009-10-04	Nat Genet	Twenty bone-mineral-density loci identified by large-scale meta-analysis of genome-wide association studies.	Bone mineral density (hip)	19,195 European ancestry individuals	NA	8q24.12	TNFRSF11B	rs11995824-G	0.55	7E-9		0.07	[0.05-0.09] s.d. decrease	Affymetrix, Illumina [2543686] (imputed)	N
1500	chr8	120012860	120012861	rs13264172	29499414	Pei YF	2018-02-27	Bone	Joint study of two genome-wide association meta-analyses identified 20p12.1 and 20q13.33 for bone mineral density.	Lumbar spine bone mineral density	up to 4,692 European ancestry individuals, up to 1,539 Han Chinese ancestry individuals, up to 849 African American individuals, up to 446 Hispanic individuals, 2,882 European ancestry whole-genome sequenced individuals, 3,549 European ancestry whole-exome sequenced individuals, 26,534 European ancestry non-array genotype imputed individuals	NA	8q24.12	TNFRSF11B	rs13264172-A	0.50513	3E-25		0.0812	[0.066-0.096] unit decrease	Affymetrix, Illumina [7998108] (imputed)	N
1500	chr8	120012860	120012861	rs13264172	29499414	Pei YF	2018-02-27	Bone	Joint study of two genome-wide association meta-analyses identified 20p12.1 and 20q13.33 for bone mineral density.	Femoral neck bone mineral density	up to 4,692 European ancestry individuals, up to 1,539 Han Chinese ancestry individuals, up to 849 African American individuals, up to 446 Hispanic individuals, 2,882 European ancestry whole-genome sequenced individuals, 3,549 European ancestry whole-exome sequenced individuals, 26,534 European ancestry non-array genotype imputed individuals	NA	8q24.12	TNFRSF11B	rs13264172-A	0.50513	1E-16		0.0571	[0.044-0.071] unit decrease	Affymetrix, Illumina [7998108] (imputed)	N
1500	chr8	120013275	120013276	rs4424296	24249740	Zhang L	2013-11-17	Hum Mol Genet	Multistage genome-wide association meta-analyses identified two new loci for bone mineral density.	Bone mineral density	5,833 European ancestry females, 2,639 European ancestry males, 784 Han Chinese ancestry females, 763 Han Chinese ancestry males, 712 African American females, 409 Hispanic females	7,010 European ancestry females, 3,772 European ancestry males, 2,980 East Asian ancestry females, 2,159 East Asian ancestry males	8q24.12	TNFRSF11B	rs4424296-?	NR	9E-14	(spine)			Affymetrix, Illumina [5842825] (imputed)	N
1500	chr8	120013468	120013469	rs4335155	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	8q24.12	NR	rs4335155-?		2E-8	(Corticospinal tract )			NR [8955960] (imputed)	N
1500	chr8	120026561	120026562	rs1586274	33097703	Surakka I	2020-10-23	Nat Commun	MEPE loss-of-function variant associates with decreased bone mineral density and increased fracture risk.	Ultradistal forearm bone mineral density	21,907 European ancestry individuals	NA	8q24.12	NR	rs1586274-?	0.522378265857697	3E-6		0.04992097	[0.029-0.071] SD units increase	Illumina [11603265] (imputed)	N
1500	chr8	120026561	120026562	rs1586274	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	8q24.12		rs1586274-?	NR	2E-10		0.0121022	[0.008-0.0162] unit increase	Affymetrix [20259828] (imputed)	N
1500	chr8	120033048	120033049	rs77601444	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	8q24.12	NR	rs77601444-A	NR	5E-9		0.0346	[0.023-0.046] unit increase	Affymetrix [9000000] (imputed)	N
1500	chr8	120033523	120033524	rs4336638	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8q24.12	TNFRSF11B	rs4336638-?	NR	3E-7	(CE 18:2)	0.27874523	[0.17-0.39] unit increase	Affymetrix [at least 2500000] (imputed)	N
1500	chr8	120040253	120040254	rs76508452	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	8q24.12		rs76508452-A	0.0651	4E-8	(conditional-joint)	0.0158	[0.01-0.021] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1500	chr8	120044828	120044829	rs6469804	18445777	Styrkarsdottir U	2008-04-29	N Engl J Med	Multiple genetic loci for bone mineral density and fractures.	Bone mineral density (spine)	5,861 European ancestry individuals	7,925 European ancestry individuals	8q24.12	OPG	rs6469804-A	0.51	7E-15		0.12	[0.09-0.15] s.d. decrease	Illumina [301019]	N
1500	chr8	120050080	120050081	rs4380972	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8q24.12	TNFRSF11B	rs4380972-?	NR	3E-6	(CE 20:4)	0.23022655	[0.13-0.33] unit increase	Affymetrix [at least 2500000] (imputed)	N
1500	chr8	120052237	120052238	rs6993813	18445777	Styrkarsdottir U	2008-04-29	N Engl J Med	Multiple genetic loci for bone mineral density and fractures.	Bone mineral density (hip)	5,861 European ancestry individuals	7,925 European ancestry individuals	8q24.12	OPG	rs6993813-C	0.50	3E-11		0.09	[0.07-0.12] s.d. decrease	Illumina [301019]	N
1500	chr8	120060094	120060095	rs77914317	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	8q24.12	TNFRSF11B	rs77914317-A	0.96296875	2E-6	(TNFRSF11B, 8304_50_3)	0.27934432	[0.16-0.4] unit increase	Illumina [> 1000000] (imputed)	N
1501	chr8	120063541	120063542	rs2450083	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	8q24.12	TNFRSF11B, COLEC10	rs2450083-?	NR	8E-11		1.049	[1.04-1.06]	Affymetrix [9000000] (imputed)	N
1501	chr8	120063541	120063542	rs2450083	24945404	Kemp JP	2014-06-19	PLoS Genet	Phenotypic dissection of bone mineral density reveals skeletal site specificity and facilitates the identification of novel loci in the genetic regulation of bone mass attainment.	Bone mineral density (paediatric, skull)	7,976 European ancestry children, 289 Surinamese ancestry children, 300 Turkish ancestry children, 232 Moroccan ancestry children, 588 children	NA	8q24.12	COLEC10, TNFRSF11B	rs2450083-T	NR	3E-8	(EA)	0.0959	[0.062-0.13] unit increase	Illumina [~ 2500000] (imputed)	N
1501	chr8	120063541	120063542	rs2450083	24945404	Kemp JP	2014-06-19	PLoS Genet	Phenotypic dissection of bone mineral density reveals skeletal site specificity and facilitates the identification of novel loci in the genetic regulation of bone mass attainment.	Bone mineral density (paediatric, skull)	7,976 European ancestry children, 289 Surinamese ancestry children, 300 Turkish ancestry children, 232 Moroccan ancestry children, 588 children	NA	8q24.12	COLEC10, TNFRSF11B	rs2450083-T	0.47	2E-11		0.102	[0.073-0.131] unit increase	Illumina [~ 2500000] (imputed)	N
1501	chr8	120071897	120071898	rs1485315	31902109	Li D	2020-01-04	Genes Genomics	Progressive effects of single-nucleotide polymorphisms on 16 phenotypic traits based on longitudinal data.	Physiological traits	up to 6,835 Korean ancestry individuals	NA	8q24.12	TNFRSF11B, COLEC10	rs1485315-C	0.354	5E-6	(BMI)	0.01508	NR unit decrease	Affymetrix [305158]	N
1501	chr8	120078524	120078525	rs117863403	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	8q24.12	NR	rs117863403-T	NR	3E-12		0.0568	[0.041-0.073] unit decrease	Affymetrix [9000000] (imputed)	N
1501	chr8	120079243	120079244	rs2450058	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	8q24.12	NR	rs2450058-C	NR	2E-10		0.0187	[0.013-0.025] unit increase	Affymetrix [9000000] (imputed)	N
1501	chr8	120082252	120082253	rs1485300	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	8q24.12		rs1485300-C	0.6682	1E-10		0.0098	[0.0069-0.0127] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1501	chr8	120082817	120082817	rs71296907	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	8q24.12	COLEC10	rs71296907-CT	0.572419	3E-10		0.014313722	[0.0099-0.0188] unit increase	Affymetrix [93095623] (imputed)	N
1501	chr8	120082940	120082941	rs13259300	34012112	Chiou J	2021-05-19	Nature	Interpreting type 1 diabetes risk with genetics and single-cell epigenomics.	Type 1 diabetes	18,942 European ancestry cases, 501,638 European ancestry controls	NA	8q24.12	COLEC10	rs13259300-C	0.598278	3E-10		0.0921915	[0.063-0.121] unit decrease	Affymetrix, Illumina [62116689] (imputed)	N
1501	chr8	120082970	120082971	rs13261635	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Keratinocyte cancer (MTAG)	at least 18,538 European ancestry cases, at least 340,302 European ancestry controls	NA	8q24.12	RP11-278I4.2	rs13261635-C	0.662974	1E-8		1.0526316	[1.03-1.08]	Affymetrix [7600000] (imputed)	N
1501	chr8	120082970	120082971	rs13261635	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Basal cell carcinoma	31,787 European ancestry cases, 619,351 European ancestry controls	NA	8q24.12	RP11-278I4.2	rs13261635-C	0.687157	8E-11		1.0638298	[1.04-1.09]	Affymetrix, Illumina [up to 9061544] (imputed)	N
1501	chr8	120082970	120082971	rs13261635	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	8q24.12	Intergenic	rs13261635-T	0.332	3E-11	(MTAG)	0.0093	[0.0066-0.012] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1501	chr8	120090858	120090859	rs2465404	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	8q24.12	Intergenic	rs2465404-T	0.6301	4E-8	(MTAG)	0.0094	[0.0061-0.0127] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1501	chr8	120092973	120092974	rs1485292	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	8q24.12	COLEC10	rs1485292-T	0.63339	1E-9		0.01435059	[0.0097-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
1501	chr8	120100588	120100589	rs17179200	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	8q24.12	NR	rs17179200-G	NR	3E-11		0.0249	[0.018-0.032] unit increase	Affymetrix [9000000] (imputed)	N
1501	chr8	120101198	120101199	rs11300005	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Osteoprotegerin levels	21,758 European ancestry individuals	9,173 individuals	8q24.12		rs11300005-CT	0.53	5E-121		0.1917	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1501	chr8	120102528	120102529	rs2242313	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	TNF-related activation-induced cytokine levels	21,758 European ancestry individuals	9,173 individuals	8q24.12		rs2242313-C	0.56	5E-70		0.1729	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1501	chr8	120105150	120105151	rs7013461	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	8q24.12		rs7013461-T	NR	6E-11		0.0126	[0.0089-0.0163] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
1501	chr8	120112817	120112818	rs72682433	32769997	Zhou W	2020-08-07	Nat Commun	GWAS of thyroid stimulating hormone highlights pleiotropic effects and inverse association with thyroid cancer.	Thyroid stimulating hormone levels	119,715 European ancestry individuals	NA	8q24.12	COLEC10	rs72682433-C	0.097335247463561	4E-8		0.0419	[0.027-0.057] SD increase	Illumina [22400000] (imputed)	N
1501	chr8	120123343	120123344	rs6469811	28369058	Folkersen L	2017-04-03	PLoS Genet	Mapping of 79 loci for 83 plasma protein biomarkers in cardiovascular disease.	Blood protein levels in cardiovascular risk	3,394 European ancestry individuals	2,639 individuals	8q24.12	TNFRSF11B	rs6469811-G	0.55	3E-13		0.18	unit decrease	Illumina [5270624] (imputed)	N
1501	chr8	120123821	120123822	rs7813952	28369058	Folkersen L	2017-04-03	PLoS Genet	Mapping of 79 loci for 83 plasma protein biomarkers in cardiovascular disease.	Blood protein levels in cardiovascular risk	3,394 European ancestry individuals	2,639 individuals	8q24.12	TNFRSF11B	rs7813952-C	0.58	1E-21		0.22	unit increase	Illumina [5270624] (imputed)	N
1501	chr8	120128069	120128070	rs6469812	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	8q24.12		rs6469812-C	NR	3E-13		0.014	[0.01-0.018] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
1501	chr8	120128069	120128070	rs6469812	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	8q24.12	COLEC10	rs6469812-T	0.453714	1E-19		0.00452726	[0.0035-0.0055] unit decrease	Affymetrix [13995440] (imputed)	N
1501	chr8	120143038	120143039	rs6989684	25189868	Sung YJ	2014-09-03	Am J Hypertens	Gene-smoking interactions identify several novel blood pressure loci in the Framingham Heart Study.	Blood pressure (smoking interaction)	Up to 6,889 individuals	NA	8q24.12	COLEC10, MAL2	rs6989684-?	NR	4E-6	(SBP,CPD)			Affymetrix [2485435] (imputed)	N
1501	chr8	120143038	120143039	rs6989684	25189868	Sung YJ	2014-09-03	Am J Hypertens	Gene-smoking interactions identify several novel blood pressure loci in the Framingham Heart Study.	Blood pressure (smoking interaction)	Up to 6,889 individuals	NA	8q24.12	COLEC10, MAL2	rs6989684-?	NR	2E-7	(SBP,Pack-years)			Affymetrix [2485435] (imputed)	N
1501	chr8	120187089	120187090	rs13261773	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	8q24.12		rs13261773-C	0.1602	3E-10		0.0122	[0.0085-0.0159] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1501	chr8	120187089	120187090	rs13261773	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	8q24.12	Intergenic	rs13261773-C	0.1602	1E-10	(MTAG)	0.0116	[0.0081-0.0151] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1501	chr8	120187708	120187709	rs2468175	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	8q24.12	COLEC10, MAL2	rs2468175-G	0.63	6E-9		5.81	z-score increase	Affymetrix [4314223] (imputed)	N
1502	chr8	120197862	120197863	rs2468184	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	8q24.12	SLC12A8	rs2468184-?		3E-9				NR [7428630] (imputed)	N
1502	chr8	120200701	120200702	rs2468186	25080503	Kwan JS	2014-07-30	Hum Mol Genet	Meta-analysis of genome-wide association studies identifies two loci associated with circulating osteoprotegerin levels.	Osteoprotegerin levels	4,158 European ancestry males, 531 South Tyrol males, 4,253 European ancestry females, 692 South Tyrol females, 702 Han Chinese ancestry females	NA	8q24.12	COLEC10, MAL2, TNFRSF11B	rs2468186-T	0.623	8E-9	(Female-specific)	0.04	[0.026-0.054] unit increase	Affymetrix, Illumina [up to 2544063] (imputed)	N
1502	chr8	120212183	120212184	rs35250297	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	8q24.12		rs35250297-T	0.1158	1E-10	(conditional-joint)	0.0141	[0.0098-0.0184] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1502	chr8	120212989	120212990	rs1425053	25080503	Kwan JS	2014-07-30	Hum Mol Genet	Meta-analysis of genome-wide association studies identifies two loci associated with circulating osteoprotegerin levels.	Osteoprotegerin levels	4,158 European ancestry males, 531 South Tyrol males, 4,253 European ancestry females, 692 South Tyrol females, 702 Han Chinese ancestry females	NA	8q24.12	COLEC10, MAL2, TNFRSF11B	rs1425053-A	0.607	8E-15	(Sex-combined)	0.037	[0.028-0.046] unit increase	Affymetrix, Illumina [up to 2544063] (imputed)	N
1502	chr8	120216829	120216830	rs17182246	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	8q24.12		rs17182246-C	NR	4E-10		0.0125	[0.0086-0.0164] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
1502	chr8	120224805	120224806	rs1364705	19668339	Potkin SG	2009-08-07	PLoS One	Hippocampal atrophy as a quantitative trait in a genome-wide association study identifying novel susceptibility genes for Alzheimer's disease.	Hippocampal atrophy	162 European ancestry cases, 192 European ancestry controls, 7 African American cases, 14 African American controls, 1 Asian ancestry cases, 3 Asian ancestry controls, 2 cases	NA	8q24.12	MAL2	rs1364705-?	NR	9E-6				Illumina [516645]	N
1502	chr8	120261311	120261312	rs72684232	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	8q24.12		rs72684232-?	NR	7E-12				NR [~ 8900000] (imputed)	N
1503	chr8	120346709	120346710	rs2447186	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 15)	19,670 European ancestry individuals	NA	8q24.12		rs2447186-?	NR	4E-11				NR [9705931] (imputed)	N
1503	chr8	120347475	120347476	rs2469991	30504769	Ferkingstad E	2018-11-30	Nat Commun	Genome-wide association meta-analysis yields 20 loci associated with gallstone disease.	Gallstone disease	27,174 European ancestry cases, 736,838 European ancestry controls	NA	8q24.12	MAL2	rs2469991-?		9E-12		1.0752687	[1.05-1.1]	Affymetrix, Illumina [43000000] (imputed)	N
1503	chr8	120353266	120353267	rs2469997	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	8q24.12		rs2469997-?	NR	2E-17				NR [~ 8900000] (imputed)	N
1503	chr8	120395995	120395996	rs67665719	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption interaction (2df test)	63,608 European ancestry drinkers, 10,193 African American or Afro-Caribbean heavy drinkers,  2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,494 European ancestry non-drinkers, 11,224 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,002 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,452 Hispanic drinkers, 43,316 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,945 Asian ancestry non-drinkers, 6,925 Hispanic non-drinkers	8q24.12	NOV	rs67665719-A	0.75	9E-10	(Asian, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1503	chr8	120397914	120397920	rs748689507	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	8q24.12	SNORA32	rs748689507-G	0.2247	4E-7		0.0439	[0.027-0.061] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1503	chr8	120400531	120400532	rs34112166	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	8q24.12		rs34112166-A	NR	4E-18		0.0247	[0.019-0.03] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1503	chr8	120400531	120400532	rs34112166	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Pulse pressure x alcohol consumption (light vs heavy) interaction (2df test)	56,705 European ancestry heavy and light drinkers, 9,725 African American or Afro-Caribbean heavy and light drinkers, 1,789 Asian ancestry heavy and light drinkers, 4,812 Hispanic or Latin American heavy and light drinkers	42,079 European ancestry heavy drinkers, 217 African American heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic heavy drinkers, 74,756 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	8q24.12	NOV	rs34112166-A	0.21	4E-17	(AA, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1503	chr8	120422798	120422799	rs58936256	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	8q24.12	NOV	rs58936256-C	0.215	4E-12	(Protein NOV homolog, NOV.2737.22.2)	0.21	[0.15-0.27] unit increase	Affymetrix [10572788] (imputed)	N
1503	chr8	120425554	120425554	rs34960065	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	8q24.12		rs34960065-AAGT	NR	1E-67		0.0442	[0.039-0.049] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
1503	chr8	120427647	120427648	rs1381335	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	8q24.12	NOV	rs1381335-T	0.242395396719715	2E-10		0.0039879	[NR] unit decrease	Affymetrix [> 30000000] (imputed)	N
1503	chr8	120432724	120432725	rs17791208	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	8q24.12	NOV	rs17791208-G	0.76015625	1E-16	(NOV, 2737_22_2)	0.237625	[0.18-0.29] unit decrease	Illumina [> 1000000] (imputed)	N
1503	chr8	120435811	120435812	rs2071518	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Pulse pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	8q24.12	NOV	rs2071518-T	0.254	2E-8	(EA, initial)	0.302	[0.2-0.41] unit increase	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
1503	chr8	120435811	120435812	rs2071518	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	8q24.12	NOV	rs2071518-C		3E-6		0.199	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1503	chr8	120435811	120435812	rs2071518	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	8q24.12	NOV	rs2071518-C		8E-13		0.291	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1503	chr8	120435811	120435812	rs2071518	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	8q24.12	NOV	rs2071518-C		3E-12	(EA)	0.313	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1503	chr8	120435811	120435812	rs2071518	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	8q24.12	NOV	rs2071518-C		3E-38		0.37	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1503	chr8	120435811	120435812	rs2071518	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	8q24.12	NOV	rs2071518-C		4E-7		0.203	unit increase	Affymetrix [at least 2696785] (imputed)	N
1503	chr8	120435811	120435812	rs2071518	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	8q24.12	NOV	rs2071518-C		3E-7	(EA)	0.223	unit increase	Affymetrix [at least 2696785] (imputed)	N
1503	chr8	120435811	120435812	rs2071518	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	8q24.12	NOV	rs2071518-C		9E-14		0.195	unit increase	Affymetrix [at least 2696785] (imputed)	N
1503	chr8	120435811	120435812	rs2071518	21909110	Wain LV	2011-09-11	Nat Genet	Genome-wide association study identifies six new loci influencing pulse pressure and mean arterial pressure.	Blood pressure	74,064 European ancestry individuals	48,607 European ancestry individuals	8q24.12	NOV	rs2071518-T	0.17	4E-9	(Pulse Pressure)	0.312	[0.21-0.41] mmHg increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1503	chr8	120436874	120436875	rs11783703	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	8q24.12	NOV	rs11783703-A	0.2092	5E-55		0.4663	[0.41-0.52] mmHg increase	Affymetrix [NR] (imputed)	N
1503	chr8	120437596	120437596	rs550478017	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	8q24.12	NR	rs550478017-CG	0.220115	2E-8		0.0456671	[0.03-0.062] unit decrease	Affymetrix [17914406] (imputed)	N
1503	chr8	120443755	120443756	rs149481999	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	8q24.12		rs149481999-G	NR	4E-12		0.0187	[0.013-0.024] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1503	chr8	120444300	120444301	rs1461695	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Pulse pressure x alcohol consumption (light vs heavy) interaction (2df test)	56,705 European ancestry heavy and light drinkers, 9,725 African American or Afro-Caribbean heavy and light drinkers, 1,789 Asian ancestry heavy and light drinkers, 4,812 Hispanic or Latin American heavy and light drinkers	42,079 European ancestry heavy drinkers, 217 African American heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic heavy drinkers, 74,756 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	8q24.12	NOV	rs1461695-A	0.26	1E-15	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1503	chr8	120446348	120446349	rs6983393	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Pulse pressure x alcohol consumption interaction (2df test)	91,099 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	238,053 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,447 Hispanic ancestry drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic ancestry non-drinkers	8q24.12	NOV	rs6983393-A	0.26	1E-39	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1503	chr8	120448663	120448664	rs7012790	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Diastolic blood pressure (long-term average)	5,304 African American individuals, 13,137 European ancestry individuals, 1,317 Hispanic individuals, 1,439 admixed individuals, 703 Chinese ancestry individuals	6,500 African American individuals, 2,451 European ancestry individuals, 2,869 Hispanic individuals	8q24.12	NR	rs7012790-A	0.7405	5E-7		0.3603	[0.22-0.5] mmHg increase	Affymetrix, Illumina [NR] (imputed)	N
1503	chr8	120448931	120448932	rs17189216	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	8q24.12	Intergenic	rs17189216-G	0.968	2E-7	(AA)	0.063	unit increase	Illumina [NR] (imputed)	N
1503	chr8	120451361	120451362	rs11778491	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	8q24.12	AC021733.1	rs11778491-C	0.2518	4E-28		0.0236	[0.019-0.028] unit decrease	Affymetrix [18391927] (imputed)	N
1504	chr8	120456192	120456193	rs60869342	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	8q24.12		rs60869342-T	NR	5E-30		0.0215	[0.018-0.025] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1504	chr8	120458520	120458521	rs11780200	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Diastolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	8q24.12	NOV	rs11780200-A	0.3552	2E-29		0.3319	[0.27-0.39] mmHg decrease	Affymetrix [NR] (imputed)	N
1504	chr8	120466958	120466959	rs80309268	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NOV	5,332 Icelandic ancestry individuals	NA	8q24.12		rs80309268-C	0.2367	1E-26		0.208036	[0.17-0.25] unit increase	Illumina [7506463] (imputed)	N
1504	chr8	120466958	120466959	rs80309268	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	8q24.12	NR	rs80309268-T		7E-13		0.329	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1504	chr8	120466958	120466959	rs80309268	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	8q24.12	NR	rs80309268-T		3E-12	(EA)	0.341	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1504	chr8	120466958	120466959	rs80309268	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	8q24.12	NR	rs80309268-T		5E-38		0.413	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1504	chr8	120466958	120466959	rs80309268	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	8q24.12	NR	rs80309268-T		7E-9	(EA)	0.273	unit increase	Affymetrix [at least 2696785] (imputed)	N
1504	chr8	120466958	120466959	rs80309268	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	8q24.12	NR	rs80309268-T		3E-9		0.265	unit increase	Affymetrix [at least 2696785] (imputed)	N
1504	chr8	120466958	120466959	rs80309268	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	8q24.12	NR	rs80309268-T		1E-16		0.242	unit increase	Affymetrix [at least 2696785] (imputed)	N
1504	chr8	120467208	120467209	rs4871222	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	8q24.12		rs4871222-G	0.234403	3E-8		0.0131859	[0.0085-0.0178] unit decrease	Illumina [13479295] (imputed)	N
1504	chr8	120467208	120467209	rs4871222	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	8q24.12	NOV, ENPP2	rs4871222-?	NR	3E-11		0.022316664	[0.016-0.029] unit decrease	Illumina [27896057] (imputed)	N
1504	chr8	120475237	120475238	rs1585518	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	8q24.12	Intergenic	rs1585518-G	0.964	2E-7	(AA)	0.061	unit increase	Illumina [NR] (imputed)	N
1504	chr8	120475357	120475358	rs1599473	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	8q24.12		rs1599473-?	NR	1E-41				NR [~ 8900000] (imputed)	N
1504	chr8	120506545	120506546	rs7841822	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	8q24.12		rs7841822-?	NR	5E-9		0.0115834	[0.0074-0.0157] unit increase	Affymetrix [20259828] (imputed)	N
1504	chr8	120515347	120515348	rs28575764	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	8q24.12		rs28575764-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1504	chr8	120528701	120528702	rs180768561	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	8q24.12	ENPP2	rs180768561-T	0.0194633699933896	3E-6	(G_Streptococcus_HB)	1.01969	[0.59-1.44] unit decrease	Illumina [7711310] (imputed)	N
1504	chr8	120556573	120556574	rs10102546	24665060	Argos M	2014-03-24	J Med Genet	Genome-wide association study of smoking behaviours among Bangladeshi adults.	Smoking cessation	366 Bangladeshi ancestry former smoker males, 87 Bangladeshi ancestry former smoker females, 1,471 Bangladeshi ancestry current smoker males, 111 Bangladeshi ancestry current smoker females	NA	8q24.12	NR	rs10102546-?		7E-6				Illumina [1211988] (imputed)	N
1505	chr8	120596022	120596023	rs10283100	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	8q24.12		rs10283100-A	0.05	5E-59		16.2	z score increase	Affymetrix [9061022] (imputed)	N
1505	chr8	120596022	120596023	rs10283100	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	8q24.12		rs10283100-A	0.05	1E-25		10.47	z score increase	Affymetrix [9061022] (imputed)	N
1505	chr8	120596022	120596023	rs10283100	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	8q24.12		rs10283100-?	NR	1E-12				NR [9705931] (imputed)	N
1505	chr8	120596022	120596023	rs10283100	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	8q24.12	ENPP2	rs10283100-A	0.0555	4E-44		0.0575	[0.049-0.066] unit decrease	Affymetrix [18391927] (imputed)	N
1505	chr8	120596022	120596023	rs10283100	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	244,730 European ancestry women	NA	8q24.12	ENPP2	rs10283100-A	0.056	7E-29		0.06	[0.048-0.072] unit decrease	Affymetrix [18391927] (imputed)	N
1505	chr8	120596022	120596023	rs10283100	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	205,513 European ancestry men	NA	8q24.12	ENPP2	rs10283100-A	0.056	4E-20		0.05	[0.038-0.062] unit decrease	Affymetrix [18391927] (imputed)	N
1505	chr8	120596022	120596023	rs10283100	32963231	Hofer E	2020-09-22	Nat Commun	Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.	Cortical volume	22,824 European and African American ancestry individuals	NA	8q24.12	ENPP2	rs10283100-?		8E-11	(Insula)			Affymetrix, Illumina [NR] (imputed)	N
1505	chr8	120596022	120596023	rs10283100	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	8q24.12	ERC2	rs10283100-?		2E-11				NR [7428630] (imputed)	N
1505	chr8	120596022	120596023	rs10283100	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	8q24.12	ENPP2	rs10283100-?		7E-14				NR [7428630] (imputed)	N
1505	chr8	120596022	120596023	rs10283100	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	8q24.12	NR	rs10283100-A	0.0539	4E-14	(Rostral Middle Frontal)	64.87364	[48.03-81.72] unit increase	Affymetrix, Illumina [NR]	N
1505	chr8	120596022	120596023	rs10283100	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	8q24.12	NR	rs10283100-G	0.944735	4E-12		0.101833	[0.073-0.131] unit increase	Affymetrix [17914406] (imputed)	N
1505	chr8	120596022	120596023	rs10283100	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	8q24.12	NR	rs10283100-?	NR	5E-10	(left insula)			NR [9227495] (imputed)	N
1505	chr8	120596022	120596023	rs10283100	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	8q24.12	NR	rs10283100-?	NR	3E-11	(right insula)			NR [9227495] (imputed)	N
1505	chr8	120596022	120596023	rs10283100	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	8q24.12	ENPP2	rs10283100-G	0.945141	2E-6		0.032408	[0.019-0.046] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
1505	chr8	120596022	120596023	rs10283100	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	8q24.12	ENPP2	rs10283100-G	0.945835	7E-13		0.041928	[0.03-0.053] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1505	chr8	120596022	120596023	rs10283100	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	8q24.12		rs10283100-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1505	chr8	120596022	120596023	rs10283100	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	8q24.12		rs10283100-?	NR	4E-35				NR [~ 8900000] (imputed)	N
1505	chr8	120597416	120597417	rs1992721	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	8q24.12	NR	rs1992721-?	NR	3E-8	(left insula)			NR [9227495] (imputed)	N
1505	chr8	120599379	120599380	rs930605	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	8q24.12	ENPP2	rs930605-A	0.0184540082302905	4E-7	(F_Streptococcaceae_HB)	1.1208	[0.69-1.55] unit decrease	Illumina [7711310] (imputed)	N
1505	chr8	120599379	120599380	rs930605	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	8q24.12	ENPP2	rs930605-A	0.0184540082302905	2E-6	(O_Lactobacillales_HB)	1.10419	[0.65-1.56] unit decrease	Illumina [7711310] (imputed)	N
1505	chr8	120618119	120618120	rs4871401	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	8q24.12		rs4871401-A	0.47	2E-31		11.68	z score increase	Affymetrix [9061022] (imputed)	N
1505	chr8	120618119	120618120	rs4871401	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	8q24.12	NR	rs4871401-A	0.4398	1E-17				NR [9056863] (imputed)	N
1505	chr8	120624151	120624152	rs7012253	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	8q24.12	NR	rs7012253-T	0.2422	1E-17				NR [9056863] (imputed)	N
1505	chr8	120624385	120624386	rs7464710	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	8q24.12	ENPP2	rs7464710-C	0.7373	6E-6		0.0353	[0.02-0.051] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1505	chr8	120646733	120646734	rs144631932	33483693	Clements CC	2021-01-22	Mol Psychiatry	Genome-wide association study of patients with a severe major depressive episode treated with electroconvulsive therapy.	Major depressive episode treated with electroconvulsive therapy	2,725 European ancestry cases, 3,290 European ancestry controls	NA	8q24.12	ENPP2	rs144631932-?	NR	2E-8		0.4121	[0.11-0.72]	Illumina [NR] (imputed)	N
1505	chr8	120646733	120646734	rs144631932	33483693	Clements CC	2021-01-22	Mol Psychiatry	Genome-wide association study of patients with a severe major depressive episode treated with electroconvulsive therapy.	Major depressive disorder and major depressive episode treated with electroconvulsive therapy	1,796 European ancestry cases, 3,290 European ancestry controls	NA	8q24.12	ENPP2	rs144631932-?	NR	8E-8		0.4001	[0.066-0.735]	Illumina [NR] (imputed)	N
1505	chr8	120647928	120647929	rs7007970	21998595	N'Diaye A	2011-10-06	PLoS Genet	Identification, replication, and fine-mapping of Loci associated with adult height in individuals of african ancestry.	Height	20,427 African ancestry individuals	Up to 16,436 African American individuals	8q24.12	ENPP2	rs7007970-C	0.73	6E-6		0.041	[0.023-0.059] unit decrease	Affymetrix, Illumina [3310998] (imputed)	N
1505	chr8	120687668	120687669	rs6984417	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	8q24.12		rs6984417-?	NR	9E-10				NR [~ 8900000] (imputed)	N
1505	chr8	120709206	120709207	rs141166527	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	8q24.12		rs141166527-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1506	chr8	120725201	120725202	rs71304906	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	8q24.12	RN7SKP153	rs71304906-A	0.430292	9E-11		0.015361862	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1506	chr8	120749165	120749166	rs10092747	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	8q24.12		rs10092747-T	NR	3E-8		0.0128	[0.0083-0.0173] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
1506	chr8	120749165	120749166	rs10092747	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	8q24.12		rs10092747-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1506	chr8	120815383	120815384	rs78898975	34220922	Wang J	2021-06-17	Front Genet	Genome-Wide Association Analyses Identify Variants in <i>IRF4</i> Associated With Acute Myeloid Leukemia and Myelodysplastic Syndrome Susceptibility.	Therapy-related myelodysplastic syndrome	96 European ancestry cases, 2,814 European ancestry controls	NA	8q24.12		rs78898975-C	0.015	1E-8		5.87	[3.2-10.76]	Illumina [9000000] (imputed)	N
1506	chr8	120817900	120817901	rs149163456	28957384	Kim SK	2017-09-28	PLoS One	Two genetic loci associated with ankle injury.	Ankle injury	1,421 European ancestry cases, 154 Hispanic/Latino cases, 121 East Asian ancestry cases, 81,843 European ancestry controls, 8,406 Hispanic/Latino controls, 7,397 East Asian ancestry controls	NA	8q24.12	NR	rs149163456-T	NR	6E-6		1.414		Affymetrix [8183964] (imputed)	N
1506	chr8	120819556	120819557	rs4871635	32844198	Dumitrescu L	2020-08-01	Brain	Genetic variants and functional pathways associated with resilience to Alzheimer's disease.	Residual cognitive resilience	3,820 European ancestry cognitively unimpaired individuals	NA	8q24.12	NR	rs4871635-?	0.1394	2E-7		0.179251	NR unit decrease	Affymetrix, Illumina [4840740] (imputed)	N
1506	chr8	120846588	120846589	rs14027	28203683	Heit JA	2017-02-16	Thromb Haemost	Identification of unique venous thromboembolism-susceptibility variants in African-Americans.	Venous thromboembolism adjusted for sickle cell variant rs77121243-T	393 African American cases, 4,941 African American controls.	NR	8q24.12	DSCC1	rs14027-?	0.84	5E-6		1.7793595		Affymetrix, Illumina [14074516] (imputed)	N
1507	chr8	120857454	120857455	rs35148850	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q24.12	NR	rs35148850-G	0.348609	5E-11				Affymetrix, Illumina [24246363] (imputed)	N
1507	chr8	120860712	120860713	rs150930665	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta minimum area	35,110 individuals	NA	8q24.12		rs150930665-C	0.993922	5E-14		0.353236	[0.26-0.45] increase	Affymetrix [NR]	N
1507	chr8	120860712	120860713	rs150930665	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta maximum area	31,908 individuals	NA	8q24.12		rs150930665-C	0.993897	1E-12		0.352923	[0.25-0.45] increase	Affymetrix [NR]	N
1507	chr8	120886485	120886486	rs79346194	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	8q24.12	DEPTOR	rs79346194-A	0.6945	2E-8		0.0022	[0.0014-0.003] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
1507	chr8	120894207	120894208	rs78936994	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	8q24.12	DEPTOR	rs78936994-T	0.2193	5E-7		0.0024	[0.0016-0.0032] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
1507	chr8	120896810	120896811	rs71304915	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	8q24.12	NR	rs71304915-?		2E-8	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
1507	chr8	120913884	120913885	rs7465612	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Choroid plexus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	8q24.12	DEPTOR	rs7465612-?		1E-7				Illumina [4322238] (imputed)	N
1507	chr8	120934125	120934126	rs28513081	31710517	Allen RJ	2019-11-11	Am J Respir Crit Care Med	Genome-Wide Association Study of Susceptibility to Idiopathic Pulmonary Fibrosis.	Idiopathic pulmonary fibrosis	2,668 European ancestry cases, 8,591 European ancestry controls	1,456 European ancestry cases, 11,874 European ancestry controls	8q24.12	DEPTOR	rs28513081-A	0.572	2E-11		1.2048193	[1.14-1.27]	Affymetrix, Illumina [10790934] (imputed)	N
1507	chr8	120934125	120934126	rs28513081	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	8q24.12		rs28513081-?	NR	3E-20				NR [~ 8900000] (imputed)	N
1507	chr8	120941715	120941716	rs6993270	26297903	Fabbri C	2015-08-20	Prog Neuropsychopharmacol Biol Psychiatry	Genetics of long-term treatment outcome in bipolar disorder.	Depressive episodes in bipolar disorder	723 European ancestry cases	NA	8q24.12	DEPTOR	rs6993270-?	NR	1E-6		0.12	[NR] unit increase	Affymetrix [329806] (imputed)	N
1507	chr8	120941715	120941716	rs6993270	26297903	Fabbri C	2015-08-20	Prog Neuropsychopharmacol Biol Psychiatry	Genetics of long-term treatment outcome in bipolar disorder.	Depressive and manic episodes in bipolar disorder	723 European ancestry cases	NA	8q24.12	DEPTOR	rs6993270-?	NR	9E-7		0.14	[NR] unit increase	Affymetrix [329806]	N
1507	chr8	120944656	120944656	rs139197649	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	8q24.12	DEPTOR	rs139197649-TAAG	0.329167	4E-10		0.014940632	[0.01-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1507	chr8	120953872	120953873	rs7005380	23583980	Fingerlin TE	2013-04-14	Nat Genet	Genome-wide association study identifies multiple susceptibility loci for pulmonary fibrosis.	Interstitial lung disease	1,161 European ancestry cases, 4,683 European ancestry controls	876 European ancestry cases, 1,890 European ancestry controls	8q24.12	NR	rs7005380-G	0.63	2E-7		1.25	[1.15-1.37]	Illumina [439828]	N
1508	chr8	120984030	120984031	rs28760377	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	8q24.12		rs28760377-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1508	chr8	120985247	120985248	rs1814954	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	8q24.12		rs1814954-C	NR	2E-10		0.0111	[0.0078-0.0144] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
1508	chr8	120993822	120993823	rs10086797	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	8q24.12	DEPTOR	rs10086797-A	0.257402	5E-14		0.019497572	[0.014-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1508	chr8	120993822	120993823	rs10086797	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	8q24.12	DEPTOR	rs10086797-A	0.257405	5E-13		0.018742599	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1508	chr8	121002675	121002676	rs149165710	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	445,360 European ancestry individuals	225,112 European ancestry individuals	8q24.12	DEPTOR	rs149165710-A	0.0037	3E-12		0.11488497	[0.083-0.147] unit increase	Illumina [up to 29454346] (imputed)	N
1508	chr8	121006825	121006826	rs7836786	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	8q24.12		rs7836786-?	NR	5E-11				NR [~ 8900000] (imputed)	N
1508	chr8	121006827	121006828	rs7836436	26039976	Wei Z	2015-06-17	Sci Rep	Genome-Wide Association Studies of HIV-1 Host Control in Ethnically Diverse Chinese Populations.	HIV-1 viral setpoint	326 Han Chinese ancestry cases, 58 Dai Chinese ancestry cases, 40 Jingpo Chinese ancestry cases, 83 Uygur Chinese ancestry cases, 11 Hui Chinese ancestry cases, 20 East Asian cases	NA	8q24.12	DEPDC6	rs7836436-G	0.05	3E-6	(Xin)	1.401	unit decrease	Illumina [up to 528294]	N
1508	chr8	121007103	121007104	rs9656934	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	8q24.12		rs9656934-T	NR	5E-14		0.0165	[0.012-0.021] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1508	chr8	121041044	121041045	rs12386849	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q24.12	NR	rs12386849-T	0.276027	2E-17				Affymetrix, Illumina [24588908] (imputed)	N
1508	chr8	121041044	121041045	rs12386849	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	8q24.12	NR	rs12386849-T	0.3051	3E-15		0.016074	[0.012-0.02] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1508	chr8	121042451	121042452	rs7835803	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	8q24.12	NR	rs7835803-?	NR	2E-12				Affymetrix [NR]	N
1508	chr8	121050232	121050233	rs60717250	29769521	Ramirez J	2018-05-16	Nat Commun	Thirty loci identified for heart rate response to exercise and recovery implicate autonomic nervous system.	Heart rate response to exercise	up to 35,455 European ancestry females, up to 31,802 European ancestry males	NA	8q24.12	TAF2	rs60717250-C	0.630651	2E-8	(males)	0.485723	[0.32-0.66] bpm increase	Affymetrix [~ 7800000] (imputed)	N
1508	chr8	121058097	121058098	rs11995866	32390946	Liu L	2020-04-22	Front Endocrinol (Lausanne)	Twelve New Genomic Loci Associated With Bone Mineral Density.	Heel bone mineral density (MTAG)	426,824 individuals	NA	8q24.12	NR	rs11995866-G	0.61	7E-9		0.01	[0.0061-0.0139] unit decrease	NR [7369691] (imputed)	N
1508	chr8	121061878	121061879	rs4871827	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	8q24.12		rs4871827-A	NR	2E-8		0.0127	[0.0082-0.0172] unit increase	Affymetrix, Illumina [20529698] (imputed)	N
1508	chr8	121061878	121061879	rs4871827	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	8q24.12	DEPTOR	rs4871827-A	NR	2E-9		0.018089	[0.012-0.024] unit increase	Affymetrix [321169] (imputed)	N
1508	chr8	121061878	121061879	rs4871827	33979322	Currant H	2021-05-12	PLoS Genet	Genetic variation affects morphological retinal phenotypes extracted from UK Biobank optical coherence tomography images.	Retinal nerve fibre layer thickness or ganglion cell inner plexiform layer thickness (MTAG)	31,434 European ancestry individuals	NA	8q24.12	NR	rs4871827-A	0.33	7E-9		0.29	[0.19-0.39] unit decrease	Affymetrix [9231066] (imputed)	N
1508	chr8	121061878	121061879	rs4871827	33979322	Currant H	2021-05-12	PLoS Genet	Genetic variation affects morphological retinal phenotypes extracted from UK Biobank optical coherence tomography images.	Ganglion cell inner plexiform layer (GCIPL) thickness	31,434 European ancestry individuals	NA	8q24.12	NR	rs4871827-A	0.33	7E-9		0.29	[0.19-0.39] unit decrease	Affymetrix [9231066] (imputed)	N
1508	chr8	121061878	121061879	rs4871827	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	8q24.12	NR	rs4871827-G	0.674053	7E-11		0.0140335	[0.0098-0.0183] unit decrease	NR [NR]	N
1508	chr8	121061878	121061879	rs4871827	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	8q24.12	DEPTOR	rs4871827-G	0.67133	1E-9		0.0120061	[0.0081-0.0159] unit decrease	NR [13737936] (imputed)	N
1508	chr8	121061878	121061879	rs4871827	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	8q24.12		rs4871827-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1508	chr8	121061878	121061879	rs4871827	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	8q24.12		rs4871827-?	NR	4E-10		0.0127963	[0.0084-0.0172] unit decrease	Affymetrix [20259828] (imputed)	N
1508	chr8	121062975	121062976	rs6985424	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	8q24.12		rs6985424-?	NR	6E-8				NR [~ 8900000] (imputed)	N
1508	chr8	121101521	121101522	rs876084	28447399	Jia P	2017-04-26	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of HIV-associated neurocognitive disorder (HAND): A CHARTER group study.	Neurocognitive impairment in HIV-1 infection (dichotomous)	140 African American cases, 167 European ancestry cases, 53 Hispanic cases, 6 cases, 350 African American controls, 276 European ancestry controls, 46 Hispanic controls, 11 controls	NA	8q24.12	intergenic	rs876084-T		5E-6		1.5748031	[NR]	Affymetrix [NR]	N
1509	chr8	121111721	121111722	rs143403875	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in dyslipidemia	295 Korean ancestry cases, 20,474 Korean ancestry controls	NA	8q24.12		rs143403875-G	0.01017	5E-6		3.125	[1.916-5.098]	Affymetrix [7975321] (imputed)	N
1509	chr8	121115023	121115024	rs1519814	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	8q24.12	NR	rs1519814-G	0.7773	8E-7	(EA)	0.0365	[0.022-0.051] unit decrease	Illumina [~ 11800000] (imputed)	N
1509	chr8	121154955	121154956	rs76315210	34330890	Ip HF	2021-07-30	Transl Psychiatry	Genetic association study of childhood aggression across raters, instruments, and age.	Childhood aggressive behavior	87,485 European ancestry individuals	NA	8q24.12		rs76315210-C	0.163121816	9E-6		0.017613273	[0.0098-0.0254] unit decrease	Affymetrix, Illumina [up to 7284995] (imputed)	N
1509	chr8	121175125	121175126	rs112953380	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8q24.12	NR	rs112953380-C	0.01045	3E-8	(GCSH)	0.04522	NR unit increase	Illumina [1671387] (imputed)	N
1509	chr8	121214158	121214158	rs80114469	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	8q24.12	COL14A1	rs80114469-T	0.7874	2E-11		0.0155	[0.011-0.02] unit increase	Affymetrix [18391927] (imputed)	N
1509	chr8	121215002	121215003	rs10955960	30942860	Shin J	2019-04-03	J Clin Endocrinol Metab	Novel genetic locus of visceral fat and systemic inflammation.	Visceral fat	1589 French-Canadian ancestry individuals	NA	8q24.12	COL14A1	rs10955960-G	NR	1E-6	(adjusted for total body fat)	0.106	[0.063-0.149] unit increase	Illumina [8511049] (imputed)	N
1509	chr8	121218600	121218601	rs10955961	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Parasitemia in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	8q24.12	COL14A1	rs10955961-?	NR	3E-7				Affymetrix [5486770] (imputed)	N
1510	chr8	121288881	121288882	rs56311349	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	8q24.12		rs56311349-?	NR	7E-19				NR [~ 8900000] (imputed)	N
1510	chr8	121326472	121326473	rs10505380	30420678	Tasa T	2018-11-12	Eur J Hum Genet	Genetic variation in the Estonian population: pharmacogenomics study of adverse drug effects using electronic health records.	Adverse response to drug	16,226 European ancestry individuals	NA	8q24.12	COL14A1	rs10505380-G	0.195	9E-7	(HMG CoA reductase inhibitors [C10AA])	1.87		Illumina [16500000] (imputed)	N
1510	chr8	121341816	121341817	rs6987036	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	8q24.12	NR	rs6987036-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
1510	chr8	121353415	121353416	rs1563390	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	8q24.12		rs1563390-?	NR	4E-11				NR [~ 8900000] (imputed)	N
1511	chr8	121376345	121376346	rs10955971	25317112	Oh S	2014-09-30	Genomics Inform	Epidemiological and genome-wide association study of gastritis or gastric ulcer in korean populations.	Gastritis	977 Korean ancestry female cases, 3,622 Korean ancestry female controls, 804 Korean ancestry male cases, 3,335 Korean ancestry male controls	NA	8q24.12	COL14A1, MRPL13	rs10955971-T	NR	2E-6	(Females)	1.319	[NR]	NR [349184]	N
1511	chr8	121468075	121468076	rs13255475	28247064	Deming Y	2017-02-28	Acta Neuropathol	Genome-wide association study identifies four novel loci associated with Alzheimer's endophenotypes and disease modifiers.	Cerebrospinal T-tau levels	3,146 individuals	NA	8q24.12	MTBP, COL14A1, MRPL13, SNTB1	rs13255475-T	0.334	4E-6		0.028	[0.016-0.04] unit decrease	Illumina [7358575] (imputed)	N
1511	chr8	121468075	121468076	rs13255475	28247064	Deming Y	2017-02-28	Acta Neuropathol	Genome-wide association study identifies four novel loci associated with Alzheimer's endophenotypes and disease modifiers.	Cerebrospinal P-tau181p levels	3,146 individuals	NA	8q24.12	MTBP	rs13255475-T	0.334	7E-6		0.026	[0.014-0.038] unit decrease	Illumina [7358575] (imputed)	N
1511	chr8	121501722	121501723	rs7826906	25317112	Oh S	2014-09-30	Genomics Inform	Epidemiological and genome-wide association study of gastritis or gastric ulcer in korean populations.	Gastritis	977 Korean ancestry female cases, 3,622 Korean ancestry female controls, 804 Korean ancestry male cases, 3,335 Korean ancestry male controls	NA	8q24.12	intergenic	rs7826906-G	NR	3E-6	(Females)	1.316	[NR]	NR [349184]	N
1512	chr8	121526016	121526017	rs78653466	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Hepatitis A	2,442 European ancestry cases, 217,137 European ancestry controls	NA	8q24.12	NR	rs78653466-?	NR	1E-6		0.6748	[0.38-0.97] unit increase	Illumina [at least 560000] (imputed)	N
1512	chr8	121562259	121562260	rs75240021	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Tumor necrosis factor beta levels	1,559 Finnish ancestry individuals	NA	8q24.12	NR	rs75240021-G		2E-6		0.3705	[0.22-0.52] SD units decrease	NR [10700000] (imputed)	N
1512	chr8	121562417	121562418	rs7839488	23406873	Shi Y	2013-02-28	Hum Mol Genet	A genome-wide meta-analysis identifies two novel loci associated with high myopia in the Han Chinese population.	Myopia (pathological)	665 Han Chinese ancestry cases, 960 Han Chinese ancestry controls	2,128 Han Chinese ancestry cases, 3,683 Han Chinese ancestry controls		SNTB1	rs4455882-A	0.765	2E-11		1.32	[1.22-1.43]	Illumina [286031]	N
1512	chr8	121603489	121603490	rs12675712	29921221	Cha S	2018-06-19	BMC Genomics	Identification of five novel genetic loci related to facial morphology by genome-wide association studies.	Eye morphology	5,643 Korean ancestry individuals	1,926 Korean ancestry individuals	8q24.12	SNTB1	rs12675712-T	0.16	4E-6	(Left palpebral fissure height)	0.147	[NR] unit increase	Affymetrix [311944]	N
1512	chr8	121610437	121610438	rs6469937	23933737	Khor CC	2013-08-09	Hum Mol Genet	Genome-wide association study identifies ZFHX1B as a susceptibility locus for severe myopia.	Myopia (severe)	1,603 East Asian ancestry cases, 3,427 East Asian ancestry controls	1,241 East Asian ancestry cases, 3,559 East Asian ancestry controls	8q24.12	SNTB1	rs6469937-A	0.764	2E-9		1.27	[NR]	Illumina [250531]	N
1512	chr8	121626093	121626094	rs6986444	29210060	Koster R	2017-12-06	Int J Cancer	Genome-wide association study identifies the GLDC/IL33 locus associated with survival of osteosarcoma patients.	Overall survival in osteosarcoma	523 European ancestry individuals	109 Brazilian ancestry individuals	8q24.12	NR	rs6986444-T	NR	3E-6		1.87	[1.44-2.43]	Illumina [510856]	N
1512	chr8	121630739	121630740	rs6988919	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	8q24.12	SNTB1	rs6988919-?		3E-27				Affymetrix, Illumina [NR] (imputed)	N
1513	chr8	121635395	121635396	rs6986718	20889312	Wang KS	2010-10-01	Schizophr Res	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	8q24.12	NR	rs6986718-?	NR	9E-6		1.5223	[NR]	Affymetrix [722112]	N
1513	chr8	121645513	121645514	rs7840986	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Thalamus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	8q24.12	SNTB1	rs7840986-?		4E-6				Illumina [4322238] (imputed)	N
1513	chr8	121694649	121694650	rs11989782	20208534	Rothenberg ME	2010-03-07	Nat Genet	Common variants at 5q22 associate with pediatric eosinophilic esophagitis.	Eosinophilic esophagitis (pediatric)	181 European ancestry cases, 1,974 European ancestry controls	170 European ancestry cases, 1,130 European ancestry controls	8q24.12	NR	rs11989782-A	0.23	7E-6		1.53	[1.21-1.93]	Illumina [~ 550000]	N
1513	chr8	121764520	121764521	rs58202132	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	8q24.12		rs58202132-?	0.1647	4E-7		1.0516546	[1.03137227889666-1.07233584531071]	Illumina [8919992] (imputed)	N
1513	chr8	121764520	121764521	rs58202132	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	25,705 Japanese ancestry male cases, 82,774 Japanese ancestry male controls	NA	8q24.12		rs58202132-A	0.200822638	1E-8		1.0771675	[1.049931474-1.105110005]	Illumina [8919992] (imputed)	N
1514	chr8	121847799	121847800	rs4367595	31936517	Cox JW	2020-01-09	J Clin Med	Genome-Wide Association Study of Opioid Cessation.	Opioid use cessation	1,130 African American individuals, 2,919 European ancestry individuals	NA	8q24.12	RP11-713M15.2, RP11-369K17.1	rs4367595-A	0.37	9E-6		1.27	[NR]	Illumina [NR] (imputed)	N
1514	chr8	121851424	121851425	rs79323383	26821981	Koga AT	2016-01-28	J Neural Transm (Vienna)	Genome-wide association analysis to predict optimal antipsychotic dosage in schizophrenia: a pilot study.	antipsychotic drug dosage in schizophrenia or schizoaffective disorder	up to 39 European ancestry schizophrenia cases, up to 40 European ancestry schizoaffective cases	NA	8q24.12	STNB1	rs79323383-G	NR	7E-7	(DDD)	0.4768	[NR] unit decrease	Illumina [1190033]	N
1514	chr8	121855511	121855512	rs4621851	32724131	Li QS	2020-07-28	Sci Rep	Genome-wide association study and polygenic risk score analysis of esketamine treatment response.	Response to esketamine (responder status) in treatment resistant depression	255 European ancestry individuals	NA	8q24.12	NR	rs4621851-?		3E-6		0.3408	[-0.11372-0.79532]	NR [NR] (imputed)	N
1514	chr8	121857592	121857593	rs202236734	32724131	Li QS	2020-07-28	Sci Rep	Genome-wide association study and polygenic risk score analysis of esketamine treatment response.	Response to esketamine in treatment resistant depression	255 European ancestry individuals	NA	8q24.12	NR	rs202236734-?		9E-7		7.8351	[4.74-10.93] unit increase	NR [NR] (imputed)	N
1514	chr8	121860588	121860589	rs13248499	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q24.12	NR	rs13248499-G	NR	1E-11		0.025	unit increase	Affymetrix [at least 7091467] (imputed)	N
1514	chr8	121860588	121860589	rs13248499	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q24.12	NR	rs13248499-G	0.338	4E-9	(EA)	0.024	unit increase	Affymetrix [at least 7091467] (imputed)	N
1514	chr8	121862298	121862299	rs10086522	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	8q24.12	NR	rs10086522-A	NR	8E-13		0.0198	[0.014-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
1514	chr8	121862298	121862299	rs10086522	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	8q24.12	NR	rs10086522-A	NR	1E-14		0.0214	[0.016-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
1514	chr8	121867779	121867780	rs10955991	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	8q24.12		rs10955991-C	NR	1E-20		0.0204	[0.016-0.025] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
1514	chr8	121867779	121867780	rs10955991	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	8q24.12	SNTB1	rs10955991-T	0.31822	3E-22		0.019752	[0.016-0.024] unit increase	Affymetrix [NR] (imputed)	N
1514	chr8	121867779	121867780	rs10955991	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	8q24.12	SNTB1	rs10955991-T	0.318175	2E-22		0.0204837	[0.016-0.025] unit increase	Affymetrix [NR] (imputed)	N
1514	chr8	121868550	121868551	rs4871137	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	HDL cholesterol levels	up to 23,761 African ancestry individuals, 13,171 Asian ancestry individuals, up to 90,272 European ancestry individuals, 6,620 Hispanic individuals	NA	8q24.12		rs4871137-T	0.6134	8E-6		0.0053	[0.0029-0.0077] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1514	chr8	121868550	121868551	rs4871137	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	High density lipoprotein cholesterol levels	up to 237,050 European ancestry individuals, up to 16,935 African ancestry individuals, up to 30,468 South Asian ancestry individuals, up to 8,287 East Asian ancestry individuals, 5,084 Hispanic individuals	up to 286,268 European and unknown ancestry individuals	8q24.12	SNTB1	rs4871137-T	NR	8E-23		0.020528195	[0.016-0.025] unit decrease	Illumina [242289]	N
1514	chr8	121868550	121868551	rs4871137	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	High density lipoprotein cholesterol levels	up to 237,050 European ancestry individuals	NA	8q24.12	NR	rs4871137-T	0.66	3E-13		0.024	unit decrease	Illumina [242289]	N
1514	chr8	121868550	121868551	rs4871137	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	HDL cholesterol levels	34,930 East Asian ancestry individuals, 187,167 European ancestry individuals	8,741 Chinese ancestry individuals	8q24.12	SNTB1	rs4871137-T	0.3536	8E-10	(Trans-ethnic initial)	0.0209	[0.014-0.028] unit increase (EA Beta values)	Affymetrix, Illumina [~ 1900000] (imputed)	N
1514	chr8	121868550	121868551	rs4871137	27286809	Ligthart S	2016-06-10	BMC Genomics	Bivariate genome-wide association study identifies novel pleiotropic loci for lipids and inflammation.	C-reactive protein levels or HDL-cholesterol levels (pleiotropy)	65,000 individuals (C-reactive protein), 99,900 individuals (HDL-cholesterol)	NA	8q24.12	SNTB1	rs4871137-T	NR	3E-8				NR [2501543] (imputed)	N
1514	chr8	121872463	121872464	rs10955992	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	8q24.12	SNTB1, HAS2	rs10955992-C	NR	5E-9	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1514	chr8	121872463	121872464	rs10955992	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	8q24.12	SNTB1, HAS2	rs10955992-C	NR	2E-14				Affymetrix, Illumina [NR] (imputed)	N
1514	chr8	121872463	121872464	rs10955992	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	8q24.12	SNTB1, HAS2	rs10955992-C	NR	7E-6	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
1514	chr8	121872463	121872464	rs10955992	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	8q24.12	SNTB1, HAS2	rs10955992-C	NR	7E-16				Affymetrix, Illumina [NR] (imputed)	N
1514	chr8	121872463	121872464	rs10955992	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	8q24.12	SNTB1, HAS2	rs10955992-C	NR	2E-9	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1514	chr8	121872463	121872464	rs10955992	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	8q24.12	SNTB1, HAS2	rs10955992-C	NR	2E-7		0.005	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1514	chr8	121872463	121872464	rs10955992	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	8q24.12	SNTB1, HAS2	rs10955992-C	NR	3E-6		0.005578	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1514	chr8	121875082	121875083	rs7836397	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	8q24.12		rs7836397-G	0.571332	4E-8		0.0226355	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
1514	chr8	121876180	121876181	rs12547186	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	High density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	8q24.12	SNTB1, HAS2	rs12547186-?		4E-8		0.0247	[0.016-0.034] unit increase	Illumina [31500000] (imputed)	N
1514	chr8	121895951	121895952	rs13273912	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8q24.12	MTBP	rs13273912-?	NR	8E-6	(3-methyladipate; pimelate)	0.25365105	[0.14-0.36] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1515	chr8	121980511	121980512	rs7843236	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 2)	3,566 European ancestry individuals	4,680 European ancestry individuals	8q24.12		rs7843236-T	0.465786485	1E-9				Illumina [7417619] (imputed)	N
1515	chr8	121980718	121980719	rs7825329	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 81)	19,670 European ancestry individuals	NA	8q24.12		rs7825329-?	NR	2E-9				NR [9705931] (imputed)	N
1516	chr8	122045323	122045324	rs79455834	28498854	Liang J	2017-05-12	PLoS Genet	Single-trait and multi-trait genome-wide association analyses identify novel loci for blood pressure in African-ancestry populations.	Hypertension	18,440 African individuals	2,375 African individuals, 3,718 Korean ancestry individuals, 9,348 European ancestry individuals, 3,445 Hispanic individuals	8q24.12	NR	rs79455834-?	NR	2E-6		0.2443	[0.14-0.34] unit increase	Affymetrix, Illumina [at least 30072738] (imputed)	N
1516	chr8	122129269	122129270	rs116396065	30487263	Pollack S	2018-11-28	Diabetes	Multiethnic Genome-wide Association Study of Diabetic Retinopathy using Liability Threshold Modeling of Duration of Diabetes and Glycemic Control.	Proliferative diabetic retinopathy (vs no DR)	398 European ancestry cases, 1,970 European ancestry controls, 1,097 African American cases, 941 African American controls	1,354 East Asian ancestry cases, 1130 East Asian ancestry controls, 801 European ancestry cases, 2,880 European ancestry controls, 232 Hispanic cases, 1,048 Hispanic controls	8q24.12	NR	rs116396065-?	NR	1E-6	(AA, adjusted for duration of diabetes and glycemic control)			Affymetrix, Illumina [NR] (imputed)	N
1516	chr8	122146478	122146479	rs28738104	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	8q24.12		rs28738104-G	0.22	7E-20		9.13	z score increase	Affymetrix [9061022] (imputed)	N
1516	chr8	122151907	122151908	rs4610754	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	8q24.12		rs4610754-A	0.22	3E-8		5.52	z score increase	Affymetrix [9061022] (imputed)	N
1516	chr8	122152213	122152214	rs4871163	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	8q24.12	NR	rs4871163-A	0.2179	4E-9				NR [9056863] (imputed)	N
1516	chr8	122152406	122152407	rs4871164	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 15)	19,670 European ancestry individuals	NA	8q24.12		rs4871164-?	NR	2E-9				NR [9705931] (imputed)	N
1517	chr8	122171957	122171958	rs10101113	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	8q24.12		rs10101113-A	0.22	2E-13		7.34	z score increase	Affymetrix [9061022] (imputed)	N
1517	chr8	122171957	122171958	rs10101113	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	8q24.12	NR	rs10101113-A	0.2275	3E-11				NR [9056863] (imputed)	N
1517	chr8	122182309	122182310	rs1604897	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	8q24.12	NR	rs1604897-C	0.836453155525847	8E-6	(IGP28)	0.1864	[0.1-0.27] unit decrease	Illumina [~ 2500000] (imputed)	N
1517	chr8	122210889	122210890	rs7819988	24024966	Teumer A	2013-08-14	J Clin Periodontol	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (CDC/AAP)	up to 3,915 European ancestry individuals	NA	8q24.12	SNTB1	rs7819988-T	0.55	3E-6	(Age 20-60 years)	1.32	[1.17-1.48]	Affymetrix, Illumina [up to 17585496] (imputed)	N
1517	chr8	122217003	122217004	rs6469996	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Lateral ventricle temporal horn volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	8q24.12	NR	rs6469996-?		3E-6				Illumina [4322238] (imputed)	N
1517	chr8	122217003	122217004	rs6469996	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Hippocampal volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	8q24.12	NR	rs6469996-?		9E-6				Illumina [4322238] (imputed)	N
1517	chr8	122256120	122256121	rs2581548	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 2)	3,566 European ancestry individuals	4,680 European ancestry individuals	8q24.12		rs2581548-A	0.46742671	9E-11				Illumina [7417619] (imputed)	N
1517	chr8	122259073	122259074	rs4871180	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	8q24.12	HAS2	rs4871180-T	0.244148466986395	4E-9		0.003674	[NR] unit increase	Affymetrix [> 30000000] (imputed)	N
1517	chr8	122275905	122275906	rs7834765	24925725	Chung SA	2014-06-12	J Am Soc Nephrol	Lupus nephritis susceptibility loci in women with systemic lupus erythematosus.	Lupus nephritis in systemic lupus erythematosus	588 European ancestry cases, 1,412 European ancestry controls	NA	8q24.12	intergenic	rs7834765-T	NR	1E-6	(Recessive)	3.15	[1.97-5.03]	Affymetrix, Illumina [1621689] (imputed)	N
1518	chr8	122297440	122297441	rs16895033	27958378	Floyd JS	2016-12-13	Pharmacogenomics J	Large-scale pharmacogenomic study of sulfonylureas and the QT, JT and QRS intervals: CHARGE Pharmacogenomics Working Group.	JT interval (sulfonylurea treatment interaction)	2,095 European ancestry exposed individuals, 42,907 European ancestry unexposed individuals, 1,167 African American exposed individuals, 10,564 African American unexposed individuals, 794 Hispanic/Latino American exposed individuals, 14,330 Hispanic/Latino American unexposed individuals	NA	8q24.12	HAS2, SNTB1	rs16895033-?	NR	1E-6	(EA)	7.9	[4.76-11.04] ms decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1519	chr8	122424704	122424705	rs7017414	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	8q24.12		rs7017414-?	NR	8E-9				NR [~ 8900000] (imputed)	N
1519	chr8	122521624	122521625	rs13259692	28957384	Kim SK	2017-09-28	PLoS One	Two genetic loci associated with ankle injury.	Ankle injury	1,421 European ancestry cases, 154 Hispanic/Latino cases, 121 East Asian ancestry cases, 81,843 European ancestry controls, 8,406 Hispanic/Latino controls, 7,397 East Asian ancestry controls	NA	8q24.13	NR	rs13259692-G	NR	3E-6		1.3746		Affymetrix [8183964] (imputed)	N
1520	chr8	122589944	122589945	rs72718849	34162658	Quinn MC	2021-06-23	Cancer Epidemiol Biomarkers Prev	Identification of a locus near ULK1 associated with progression-free survival in ovarian cancer.	Progression free survival in epithelial ovarian cancer treated with carboplatin and paclitaxel	2,352 European ancestry individuals	NA	8q24.13	NR	rs72718849-A		6E-6		0.4402	[0.25-0.63] unit increase	Illumina [12764477] (imputed)	N
1520	chr8	122621908	122621909	rs11995252	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	8q24.13	HAS2	rs11995252-G	0.047	5E-6	(Folate )	0.03	[NR] nmol/L increase	Illumina [899892]	N
1520	chr8	122622499	122622500	rs17232789	21546767	Murea M	2011-05-05	Am J Nephrol	Genome-wide association scan for survival on dialysis in African-Americans with type 2 diabetes.	Dialysis-related mortality	610 African American type 2 diabetes cases	NA	8q24.13	HAS2	rs17232789-?	0.63	6E-6		1.59	[1.30-1.92]	Affymetrix [832357]	N
1520	chr8	122635766	122635767	rs10089014	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta minimum area	35,110 individuals	NA	8q24.13		rs10089014-C	0.709631	4E-11		0.0478687	[0.033-0.063] increase	Affymetrix [NR]	N
1520	chr8	122635766	122635767	rs10089014	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta maximum area	31,908 individuals	NA	8q24.13		rs10089014-C	0.709323	2E-9		0.0466112	[0.031-0.063] increase	Affymetrix [NR]	N
1520	chr8	122638070	122638071	rs62524935	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	8q24.13	NR	rs62524935-G	0.222607	1E-8		0.0212822	[0.014-0.029] unit increase	NR [19129689] (imputed)	N
1520	chr8	122644686	122644687	rs4437656	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	8q24.13		rs4437656-?	NR	6E-9				NR [~ 8900000] (imputed)	N
1520	chr8	122662668	122662669	rs3910553	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	8q24.13	NR	rs3910553-G	0.496054	1E-10		0.011835	[0.0082-0.0154] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
1520	chr8	122665120	122665121	rs10088006	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	8q24.13		rs10088006-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1520	chr8	122673982	122673983	rs112332671	32372009	de Las Fuentes L	2020-05-05	Mol Psychiatry	Gene-educational attainment interactions in a multi-ancestry genome-wide meta-analysis identify novel blood pressure loci.	Pulse pressure x educational attainment (some college) interaction (2df)	27,617 European ancestry individuals with some college education, 20,253 European ancestry individuals without college education, 8,128 African ancestry individuals with some college education, 8,537 African ancestry individuals without college education, 1,138 Asian ancestry individuals with some college education, 10,214 Asian ancestry individuals without college education, 1,869 Hispanic/Latin American individuals with some college education, 3,276 Hispanic/Latin American individuals without college education	131,584 European ancestry individuals with some college education, 110,940 European ancestry individuals without college education, 1,494 African ancestry individuals with some college education, 5,704 African ancestry individuals without college education, 2,339 Asian ancestry individuals with some college education, 8,567 Asian ancestry individuals without college education, 4,133 Hispanic individuals with some college education, 7,498 Hispanic individuals without college education	8q24.13	HAS2-AS1	rs112332671-A		2E-9	(African)	4.55	[1.57-7.53] unit decrease	Affymetrix, Illumina [~ 18800000] (imputed)	N
1521	chr8	122697131	122697132	rs3870371	24347629	Shaffer JR	2013-12-17	G3 (Bethesda)	Genome-wide association study of periodontal health measured by probing depth in adults ages 18-49 years.	Periodontal disease-related phenotype (Socransky)	93 European ancestry cases, 83 European ancestry individuals, 497 European ancestry controls	NA	8q24.13	HAS2AS, HAS2	rs3870371-?	0.32	6E-6	(PD1)	2.15	[NR]	Illumina [~ 1400000] (imputed)	N
1521	chr8	122706290	122706291	rs279612	23319000	Luykx JJ	2013-01-15	Mol Psychiatry	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (5-HIAA)	up to 398 European ancestry individuals	NA	8q24.13	intergenic	rs279612-G	NR	7E-6		0.2138	unit decrease	Illumina [5767231] (imputed)	N
1521	chr8	122706373	122706374	rs73322775	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-13 levels	3,557 Finnish ancestry individuals	NA	8q24.13	NR	rs73322775-G		5E-6		0.1527	[0.087-0.218] SD units decrease	NR [10700000] (imputed)	N
1521	chr8	122785675	122785676	rs279619	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	8q24.13		rs279619-A	0.103032	7E-10		0.022514187	[0.015-0.03] unit increase	Affymetrix [93095623] (imputed)	N
1521	chr8	122786474	122786474	rs35047585	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	8q24.13		rs35047585-CA	NR	6E-9		0.0182	[0.012-0.024] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
1522	chr8	122886749	122886750	rs16896341	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure	35,269 European ancestry cases, 63,451 European ancestry controls	NA	8q24.13	NR	rs16896341-A	0.259425	2E-6		1.069	[1.04-1.1]	Affymetrix [7791636] (imputed)	N
1522	chr8	122908502	122908503	rs7844723	17903294	Yang Q	2007-09-19	BMC Med Genet	Genome-wide association and linkage analyses of hemostatic factors and hematological phenotypes in the Framingham Heart Study.	Hemostatic factors and hematological phenotypes	Up to 1,062 European ancestry individuals	NA	8q24.13	intergenic	rs7844723-?	0.45	2E-6	(Hgb)			Affymetrix [70897]	N
1522	chr8	122909686	122909687	rs956225	22159054	Logue MW	2011-12-01	Arch Neurol	A comprehensive genetic association study of Alzheimer disease in African Americans.	Alzheimer's disease	513 African American cases, 496 African American controls	NA	8q24.13	intergenic	rs956225-A	NR	9E-6		3.33	[1.96-5.56]	Illumina [2505093] (imputed)	N
1522	chr8	122930640	122930641	rs117902240	28167095	Forno E	2017-02-04	J Allergy Clin Immunol	Genome-wide interaction study of dust mite allergen on lung function in children with asthma.	Lung function (FEV1) in asthma (dust mite allergen exposure interaction)	440 Puerto Rican ancestry child cases	497 European ancestry child cases, 605 Hispanic child cases	8q24.13	NR	rs117902240-C	0.01	7E-9				Illumina [1830000] (imputed)	N
1523	chr8	122950877	122950878	rs75545078	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	8q24.13	MRPS36P3	rs75545078-C	NR	1E-6	(sleep offset)	0.3947	[0.24-0.55] unit increase	Affymetrix [7141204] (imputed)	N
1523	chr8	122963214	122963215	rs907121	20966902	Croteau-Chonka DC	2010-10-21	Obesity (Silver Spring)	Genome-wide association study of anthropometric traits and evidence of interactions with age and study year in Filipino women.	Weight	1,780 Filipino ancestry females	NA	8q24.13	intergenic	rs907121-C	0.57	2E-6		1.83	[1.08-2.58] kg increase	Affymetrix [2073674] (imputed)	N
1523	chr8	122982837	122982838	rs12542166	24578207	Opherk C	2014-02-27	Stroke	Genome-wide genotyping demonstrates a polygenic risk score associated with white matter hyperintensity volume in CADASIL.	White matter hyperintensity volume in cerebral autosomal-dominant arteriopathy with subcortical infarcts and leukoencephalopathy	466 European ancestry individuals	NA	8q24.13	NR	rs12542166-C	NR	6E-6		0.1056	[NR] unit increase	Affymetrix [583499]	N
1524	chr8	123101742	123101743	rs12541121	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Chin dimples	58,032 European ancestry cases, 13,457 European ancestry controls	NA	8q24.13	HAS2, ZHX2	rs12541121-?	NR	5E-10		1.095	[1.064-1.127]	Illumina [13537761] (imputed)	N
1525	chr8	123230265	123230266	rs117974378	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 5 levels	252 European ancestry individuals	NA	8q24.13		rs117974378-A	NR	4E-6		0.5694	[0.33-0.81] unit decrease	Illumina [NR] (imputed)	N
1526	chr8	123408090	123408091	rs11781551	21909108	Bis JC	2011-09-11	Nat Genet	Meta-analysis of genome-wide association studies from the CHARGE consortium identifies common variants associated with carotid intima media thickness and plaque.	Carotid intima media thickness	Up to 31,211 European ancestry individuals	10,553 European ancestry individuals, 687 Orcadian individuals	8q24.13	ZHX2	rs11781551-A	0.48	2E-11	(cIMT)	0.0078	[0.01-0.01] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1526	chr8	123409761	123409762	rs4506217	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	8q24.13		rs4506217-T	0.45	7E-10		6.16	z score increase	Affymetrix [9061022] (imputed)	N
1526	chr8	123409761	123409762	rs4506217	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	8q24.13		rs4506217-T	0.45	3E-12		6.97	z score increase	Affymetrix [9061022] (imputed)	N
1526	chr8	123409761	123409762	rs4506217	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	8q24.13	NR	rs4506217-T	0.4593	2E-13				NR [9056863] (imputed)	N
1526	chr8	123458461	123458462	rs149038799	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	8q24.13	Intergenic	rs149038799-A	NR	7E-8	(between families)	5.382	unit increase	Affymetrix [up to 15107142] (imputed)	N
1527	chr8	123511651	123511652	rs12543592	26398136	Kuo PH	2015-09-23	PLoS One	Genome-Wide Association Study for Autism Spectrum Disorder in Taiwanese Han Population.	Autism spectrum disorder	315 Han Chinese ancestry cases, 1,115 Han Chinese ancestry controls	282 Han Chinese ancestry cases, 480 Han Chinese ancestry controls	8q24.13	intergenic	rs12543592-G	0.5	3E-6		1.43	[1.25-1.67]	Affymetrix [546171]	N
1527	chr8	123526557	123526558	rs117114154	34020725	Reddy JS	2021-05-21	Acta Neuropathol Commun	Genome-wide analysis identifies a novel LINC-PINT splice variant associated with vascular amyloid pathology in Alzheimer's disease.	Cerebral amyloid angiopathy x sex interaction in Alzheimer's disease	370 European ancestry men, 451 European ancestry women	NA		SMILR	rs117114154-G	0.06	2E-7				Illumina [1679420] (imputed)	N
1528	chr8	123706154	123706155	rs4871297	23028342	Sandholm N	2012-09-20	PLoS Genet	New susceptibility loci associated with kidney disease in type 1 diabetes.	Type 1 diabetes nephropathy	Up to 2,916 European ancestry Type 1 Diabetes cases with nephropathy, 3,315 European ancestry Type 1 Diabetes cases without nephropathy	Up to 1,493 European ancestry Type 1 Diabetes cases with nephropathy, 3,191 European ancestry Type 1 Diabetes cases without nephropathy	8q24.13	RP11-973F15.1	rs4871297-A	0.52	2E-6	(ESRD)	1.23	[1.14-1.35]	Affymetrix, Illumina [~ 2500000] (imputed)	N
1529	chr8	123771005	123771006	rs16897381	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8q24.13	DERL1	rs16897381-?	NR	5E-6	(ornithine)	0.3199984	[0.18-0.46] unit increase	Affymetrix [at least 2500000] (imputed)	N
1529	chr8	123840586	123840587	rs4871310	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	8q24.13	ZHX2	rs4871310-A	0.0469309999999999	7E-15		0.04060137	[0.03-0.051] unit increase	Affymetrix [93095623] (imputed)	N
1529	chr8	123840586	123840587	rs4871310	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	8q24.13	ZHX2	rs4871310-A	0.046973	6E-18		0.04552439	[0.035-0.056] unit increase	Affymetrix [93095623] (imputed)	N
1530	chr8	123881217	123881218	rs6470120	23942779	McGue M	2013-08-14	Behav Genet	A genome-wide association study of behavioral disinhibition.	Nicotine use	7,188 European ancestry individuals	NA	8q24.13	NR	rs6470120-A	0.331	7E-7		6.251	[NR] unit decrease	Illumina [527829]	N
1530	chr8	123973067	123973068	rs10108684	22542470	Ovsyannikova IG	2012-04-25	Vaccine	Genome-wide association study of antibody response to smallpox vaccine.	Immune response to smallpox vaccine (IL-6)	217 African American individuals, 580 European ancestry individuals, 217 Hispanic individuals	NA	8q24.13	ZHX2	rs10108684-?		1E-8	(AA)			Illumina [NR]	N
1530	chr8	123980447	123980448	rs11783086	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	8q24.13		rs11783086-C	NR	2E-20		0.0125	[0.0098-0.0152] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1530	chr8	123980550	123980551	rs11779459	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	8q24.13	ZHX2	rs11779459-T	0.3545	1E-13		0.0147	[0.011-0.019] unit increase	Affymetrix [18391927] (imputed)	N
1530	chr8	123980550	123980551	rs11779459	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	8q24.13		rs11779459-?	NR	7E-25				NR [~ 8900000] (imputed)	N
1530	chr8	123981871	123981872	rs11785093	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	8q24.13	ZHX2	rs11785093-A	0.106145	2E-10		0.023292111	[0.016-0.03] unit increase	Affymetrix [93095623] (imputed)	N
1530	chr8	123981871	123981872	rs11785093	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	8q24.13	ZHX2	rs11785093-A	0.106178	7E-15		0.028062621	[0.021-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
1530	chr8	123981871	123981872	rs11785093	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	8q24.13	ZHX2	rs11785093-A	0.106113	1E-18		0.032153256	[0.025-0.039] unit decrease	Affymetrix [93095623] (imputed)	N
1530	chr8	123988423	123988424	rs13248065	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Blautia)	1,068 Japanese ancestry individuals	NA	8q24.13	intergenic	rs13248065-T	0.08	2E-6	(male)	0.175	[0.1-0.25] unit increase	Illumina [6380737] (imputed)	N
1531	chr8	124027300	124027301	rs2294086	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	8q24.13	DERL1	rs2294086-G	0.110878	5E-16		0.028821573	[0.022-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
1531	chr8	124036955	124036956	rs13259131	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	8q24.13		rs13259131-T	NR	4E-8		0.0117	[0.0076-0.0158] unit decrease	Affymetrix, Illumina [20538307] (imputed)	N
1531	chr8	124076687	124076688	rs6992733	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	8q24.13	NR	rs6992733-?	NR	4E-18				Affymetrix [NR]	N
1531	chr8	124089525	124089526	rs13254600	26305897	Iyengar SK	2015-08-25	PLoS Genet	Genome-Wide Association and Trans-ethnic Meta-Analysis for Advanced Diabetic Kidney Disease: Family Investigation of Nephropathy and Diabetes (FIND).	Diabetic kidney disease	1,564 African American cases, 369  African American diabetic controls, 1,288 African American non-diabetic controls, 538 American Indian ancestry cases, 319 American Indian ancestry diabetic controls, 342 European ancestry cases, 404 European ancestry diabetic controls, 779 Mexican ancestry cases, 594 Mexican ancestry diabetic controls	950 African American cases, 50 African American diabetic controls, 1,887 African American non-diabetic controls, 471 American Indian ancestry cases, 340 American Indian ancestry diabetic controls, 486 American Indian ancestry non-diabetic controls, 582 European ancestry ancestry cases, 205 European ancestry diabetic controls, 2,568 European ancestry non-diabetic controls	8q24.13	WDR67	rs13254600-?	0.77	6E-8	(American Indian, dominant )	1.724138		Affymetrix [NR]	N
1532	chr8	124150989	124150990	rs7827419	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	8q24.13		rs7827419-A	NR	3E-10		0.0113	[0.0078-0.0148] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1532	chr8	124150989	124150990	rs7827419	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	8q24.13		rs7827419-A	NR	5E-9		0.012	[0.0081-0.0159] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1532	chr8	124185969	124185970	rs6988636	24578125	Olden M	2014-02-27	J Am Soc Nephrol	Common variants in UMOD associate with urinary uromodulin levels: a meta-analysis.	Urinary uromodulin levels	10,884 European ancestry individuals	NA	8q24.13	FAM83A	rs6988636-T	0.92	9E-7		0.13	[0.071-0.189] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1533	chr8	124369561	124369562	rs72722097	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8q24.13	NR	rs72722097-C	0.0122	8E-10	(UGDH)	1.557	NR unit increase	Illumina [1671387] (imputed)	N
1533	chr8	124369561	124369562	rs72722097	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8q24.13	NR	rs72722097-C	0.0122	1E-9	(TKT)	0.8708	NR unit increase	Illumina [1671387] (imputed)	N
1533	chr8	124369561	124369562	rs72722097	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8q24.13	NR	rs72722097-C	0.0122	1E-8	(PIR)	0.006058	NR unit increase	Illumina [1671387] (imputed)	N
1533	chr8	124369561	124369562	rs72722097	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8q24.13	NR	rs72722097-C	0.0122	1E-8	(AKR1C3)	0.5325	NR unit increase	Illumina [1671387] (imputed)	N
1533	chr8	124382183	124382184	rs117211505	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	8q24.13		rs117211505-?	NR	6E-17				NR [~ 8900000] (imputed)	N
1534	chr8	124458776	124458776	rs148204274	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	8q24.13	NR	rs148204274-TGTGTCTGTACA	0.34329299999999996	4E-8		0.0164292	[0.01-0.023] unit increase	Affymetrix [16577313] (imputed)	N
1535	chr8	124525376	124525377	rs3739288	33106475	Li QS	2020-10-26	Transl Psychiatry	Genome-wide association studies of antidepressant class response and treatment-resistant depression.	Response to norepinephrine-dopamine reuptake inhibitors (responders vs non-responders)	3,971 European ancestry responders, 3,512 European ancestry non-responders	NA	8q24.13	NR	rs3739288-T	NR	6E-6		1.291	NR	Illumina [at least 560000] (imputed)	N
1535	chr8	124535291	124535292	rs16898508	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q24.13	FBXO32	rs16898508-A	0.841151	2E-8	(-108 ms)	0.0434013	[0.028-0.059] unit decrease	Affymetrix [10000000] (imputed)	N
1535	chr8	124535291	124535292	rs16898508	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q24.13	FBXO32	rs16898508-A	0.841151	2E-8	(-106 ms)	0.0435741	[0.028-0.059] unit decrease	Affymetrix [10000000] (imputed)	N
1535	chr8	124535291	124535292	rs16898508	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q24.13	FBXO32	rs16898508-A	0.841151	2E-8	(-104 ms)	0.0422994	[0.027-0.057] unit decrease	Affymetrix [10000000] (imputed)	N
1535	chr8	124542930	124542931	rs138689397	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Intraocular pressure	101,939 European ancestry cases	NA	8q24.13	NR	rs138689397-C		4E-12		0.21	[0.15-0.27] unit increase	NR [NR]	N
1535	chr8	124542930	124542931	rs138689397	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	8q24.13	FBXO32	rs138689397-T	0.9401	2E-11		0.201	[0.14-0.26] unit decrease	Affymetrix [~ 11900000] (imputed)	N
1535	chr8	124546101	124546102	rs78332318	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atrial fibrillation/atrial flutter	29,212 European ancestry cases, 400,539 European ancestry controls, 4,150 East Asian ancestry cases, 155,540 East Asian ancestry controls	NA	8q24.13		rs78332318-T	NR	9E-17		0.1755	[0.13-0.22] unit increase	Affymetrix, Illumina [25830072] (imputed)	N
1535	chr8	124546101	124546102	rs78332318	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	8q24.13	FBXO32	rs78332318-T	0.06	9E-17	(EA)	1.14	[1.11-1.18]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1535	chr8	124551974	124551975	rs62521286	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	8q24.13	FBXO32	rs62521286-G	0.066	4E-19		1.13	[1.10-1.16]	Illumina [34740186] (imputed)	N
1535	chr8	124551974	124551975	rs62521286	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	8q24.13	FBXO32	rs62521286-G	0.07	1E-16		1.13	[1.1-1.16]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1535	chr8	124551974	124551975	rs62521286	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	8q24.13	FBXO32	rs62521286-A	0.9345	3E-10		0.18	[0.12-0.24] unit decrease	Affymetrix [~ 11900000] (imputed)	N
1535	chr8	124552132	124552133	rs62521287	29891935	Choquet H	2018-06-11	Nat Commun	A multiethnic genome-wide association study of primary open-angle glaucoma identifies novel risk loci.	Glaucoma (primary open-angle)	10,523 European ancestry cases, 203,579 European ancestry controls, 411 Hispanic cases, 4,778 Hispanic controls, 463 East Asian ancestry cases, 4,907 East Asian ancestry controls, 298 African American cases, 1,549 African American controls, 204 South Asian ancestry cases, 4,916 South Asian ancestry controls, 272 African British cases, 4,831 African British controls, 144 mixed ancestry cases, 3,427 mixed ancestry controls	NA	8q24.13	FBXO32	rs62521287-T	NR	8E-9		1.1627907	[1.11-1.23]	Affymetrix [at least 665500] (imputed)	N
1535	chr8	124553221	124553222	rs4871385	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	8q24.13		rs4871385-C	NR	2E-8		0.0144	[0.0095-0.0193] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
1535	chr8	124554215	124554216	rs111767224	35131881	Testori A	2022-02-07	Cancer Epidemiol Biomarkers Prev	Genetic analysis in African American children supports ancestry specific neuroblastoma susceptibility.	Neuroblastoma	629 African American cases, 2,990 African American controls	NA	8q24.13		rs111767224-A	NR	5E-6		1.1345	unit increase	Illumina [8524982] (imputed)	N
1535	chr8	124554316	124554317	rs62521288	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	23,963 European ancestry cases, 306,942 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	43,254 European ancestry cases, 1,471,118 European ancestry controls	8q24.13	FBXO32	rs62521288-A	NR	4E-22		0.139	unit decrease	Illumina [15409056] (imputed)	N
1535	chr8	124565310	124565311	rs16898561	34112972	DeMichele-Sweet MAA	2021-06-10	Mol Psychiatry	Genome-wide association identifies the first risk loci for psychosis in Alzheimer disease.	Psychosis in Alzheimer's disease	4,551 European ancestry cases, 5,796 European ancestry controls, 894 African American or unknown ancestry cases, 1,076 African American or unknown ancestry controls	NA	8q24.13		rs16898561-A	NR	9E-6		0.81	[0.74-0.89]	Illumina [7105229] (imputed)	N
1535	chr8	124568657	124568658	rs61510724	28525603	Ortega-Alonso A	2017-05-19	Schizophr Bull	Genome-Wide Association Study of Psychosis Proneness in the Finnish Population.	Psychosis proneness (hypomanic personality scale)	3,967 Finnish ancestry individuals	NA	8q24.13	FBXO32	rs61510724-?		3E-7				Illumina [~ 9600000] (imputed)	N
1535	chr8	124568657	124568658	rs61510724	28525603	Ortega-Alonso A	2017-05-19	Schizophr Bull	Genome-Wide Association Study of Psychosis Proneness in the Finnish Population.	Psychosis proneness (hypomanic personality scale and revised social anhedonia scale)	3,837 Finnish ancestry individuals	NA	8q24.13	FBXO32	rs61510724-?		2E-7				Illumina [~ 9600000] (imputed)	N
1535	chr8	124568657	124568658	rs61510724	28525603	Ortega-Alonso A	2017-05-19	Schizophr Bull	Genome-Wide Association Study of Psychosis Proneness in the Finnish Population.	Psychosis proneness (hypomanic personality scale and revised physical anhedonia scale)	3,787 Finnish ancestry individuals	NA	8q24.13	FBXO32	rs61510724-?		2E-6				Illumina [~ 9600000] (imputed)	N
1535	chr8	124568657	124568658	rs61510724	28525603	Ortega-Alonso A	2017-05-19	Schizophr Bull	Genome-Wide Association Study of Psychosis Proneness in the Finnish Population.	Psychosis proneness (hypomanic personality scale and perceptual aberration scale)	3,824 Finnish ancestry individuals	NA	8q24.13	FBXO32	rs61510724-?		1E-6				Illumina [~ 9600000] (imputed)	N
1535	chr8	124572234	124572235	rs80328555	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glaucoma	10,411 European ancestry cases, 474,568 European ancestry controls, 8,448 East Asian ancestry cases, 168,903 East Asian ancestry controls	NA	8q24.13		rs80328555-C	NR	7E-9		0.1708	[0.11-0.23] unit increase	Affymetrix, Illumina [25844939] (imputed)	N
1535	chr8	124600905	124600906	rs17339357	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Intraocular pressure	133,492 European ancestry individuals	NA	8q24.13	FBXO32	rs17339357-T	0.93	7E-15				Affymetrix, Illumina [8002429] (imputed)	N
1535	chr8	124607158	124607159	rs34557926	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta maximum area	31,908 individuals	NA	8q24.13		rs34557926-C	0.632911	4E-18		0.0648166	[0.05-0.08] decrease	Affymetrix [NR]	N
1535	chr8	124607158	124607159	rs34557926	31801372	Strawbridge RJ	2019-12-05	Arterioscler Thromb Vasc Biol	Carotid Intima-Media Thickness: Novel Loci, Sex-Specific Effects, and Genetic Correlations With Obesity and Glucometabolic Traits in UKB.	Carotid intima media thickness (mean-maximum)	22,179 British ancestry individuals	NA	8q24.13	NR	rs34557926-C	0.64	1E-9		0.009	[0.0051-0.0129] unit decrease	NR [NR] (imputed)	N
1535	chr8	124607158	124607159	rs34557926	31801372	Strawbridge RJ	2019-12-05	Arterioscler Thromb Vasc Biol	Carotid Intima-Media Thickness: Novel Loci, Sex-Specific Effects, and Genetic Correlations With Obesity and Glucometabolic Traits in UKB.	Carotid intima media thickness (mean)	10,708 British ancestry men, 11,471 British ancestry women	NA	8q24.13	FBXO23, KLHL38, ANAXA13	rs34557926-C	0.64	3E-12		0.011	[0.0071-0.0149] unit decrease	NR [NR] (imputed)	N
1535	chr8	124608613	124608614	rs7006122	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta minimum area	35,110 individuals	NA	8q24.13		rs7006122-T	0.630931	4E-21		0.0660495	[0.052-0.08] decrease	Affymetrix [NR]	N
1535	chr8	124610111	124610112	rs2385450	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	8q24.13	KLHL38	rs2385450-C	0.333686	6E-13		0.0142097	[0.01-0.018] unit decrease	NR [13737936] (imputed)	N
1535	chr8	124610111	124610112	rs2385450	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	8q24.13		rs2385450-?	NR	7E-12				NR [~ 8900000] (imputed)	N
1535	chr8	124610165	124610166	rs58847541	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	8q24.13		rs58847541-A	NR	5E-13		1.06	[1.04-1.07]	Affymetrix, Illumina [NR] (imputed)	N
1535	chr8	124610165	124610166	rs58847541	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	8q24.13	intergenic	rs58847541-A	0.15	6E-13	(EA)	1.08	[1.05-1.1] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
1535	chr8	124610525	124610526	rs6470159	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	8q24.13		rs6470159-?	NR	4E-10		0.0143019	[0.0099-0.0187] unit decrease	Affymetrix [20259828] (imputed)	N
1535	chr8	124614321	124614322	rs62520913	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	8q24.13	FBXO32	rs62520913-C	0.934	4E-17		0.217	[0.17-0.27] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1535	chr8	124615070	124615071	rs62520914	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Intraocular pressure	133,492 European ancestry individuals	NA	8q24.13	FBXO32	rs62520914-?	NR	1E-14		0.1996	[0.15-0.25] unit increase	Affymetrix, Illumina [up to 40000000] (imputed)	N
1535	chr8	124615070	124615071	rs62520914	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Glaucoma	11,018 European ancestry cases, 126,068 European ancestry controls	NA	8q24.13	FBXO32	rs62520914-?	NR	5E-6		1.1452237	[1.08024946437988-1.21410599576535]	Affymetrix [up to 40000000] (imputed)	N
1535	chr8	124635196	124635197	rs4871397	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q24.13	KLHL38	rs4871397-G	0.0618916	8E-9	(-92 ms)	0.0671864	[0.044-0.09] unit decrease	Affymetrix [10000000] (imputed)	N
1535	chr8	124635196	124635197	rs4871397	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q24.13	KLHL38	rs4871397-G	0.0618916	8E-9	(-104 ms)	0.0689652	[0.046-0.092] unit decrease	Affymetrix [10000000] (imputed)	N
1535	chr8	124635196	124635197	rs4871397	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q24.13	KLHL38	rs4871397-G	0.0618916	5E-9	(-94 ms)	0.0680074	[0.045-0.091] unit decrease	Affymetrix [10000000] (imputed)	N
1535	chr8	124635196	124635197	rs4871397	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q24.13	KLHL38	rs4871397-G	0.0618916	4E-8	(-98 ms)	0.0639398	[0.041-0.087] unit decrease	Affymetrix [10000000] (imputed)	N
1535	chr8	124635196	124635197	rs4871397	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q24.13	KLHL38	rs4871397-G	0.0618916	4E-8	(-106 ms)	0.0676337	[0.045-0.09] unit decrease	Affymetrix [10000000] (imputed)	N
1535	chr8	124635196	124635197	rs4871397	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q24.13	KLHL38	rs4871397-G	0.0618916	3E-8	(-108 ms)	0.067831	[0.045-0.091] unit decrease	Affymetrix [10000000] (imputed)	N
1535	chr8	124635196	124635197	rs4871397	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q24.13	KLHL38	rs4871397-G	0.0618916	2E-8	(-90 ms)	0.0661792	[0.043-0.089] unit decrease	Affymetrix [10000000] (imputed)	N
1535	chr8	124635196	124635197	rs4871397	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q24.13	KLHL38	rs4871397-G	0.0618916	2E-8	(-110 ms)	0.0676448	[0.045-0.09] unit decrease	Affymetrix [10000000] (imputed)	N
1535	chr8	124635196	124635197	rs4871397	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q24.13	KLHL38	rs4871397-G	0.0618916	1E-8	(-96 ms)	0.0664233	[0.044-0.089] unit decrease	Affymetrix [10000000] (imputed)	N
1535	chr8	124635196	124635197	rs4871397	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	8q24.13	KLHL38	rs4871397-G	0.0641	1E-18		1.1865	[0.92-1.45] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1535	chr8	124635196	124635197	rs4871397	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	8q24.13	FBXO32	rs4871397-G	0.089	1E-9		1.09	[1.06-1.12]	Illumina [34740186] (imputed)	N
1535	chr8	124635196	124635197	rs4871397	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	8q24.13	FBXO32, KLHL38	rs4871397-G	0.07	1E-10	(EA)	1.11		Affymetrix, Illumina [up to 12149979] (imputed)	N
1536	chr8	124659328	124659329	rs11991744	25055868	Sano M	2014-07-23	Hum Mol Genet	Genome-wide association study of electrocardiographic parameters identifies a new association for PR interval and confirms previously reported associations.	Electrocardiographic traits	2,994 Japanese ancestry individuals	6,805 Korean ancestry individuals	8q24.13	KLHL38	rs11991744-C	0.267	1E-7	(QRS)	0.787	[NR] unit decrease	Illumina [~ 2500000]	N
1536	chr8	124663986	124663987	rs16898691	30012220	Prins BP	2018-07-17	Genome Biol	Exome-chip meta-analysis identifies novel loci associated with cardiac conduction, including ADAMTS6.	QRS duration	up to 77,898 European ancestry individuals, up to 7,695 African American individuals	up to 111,874 European ancestry individuals	8q24.13	KLHL38	rs16898691-G	0.038231	6E-19		0.761828	[0.59-0.93] ms decrease	Illumina [162199]	N
1536	chr8	124663986	124663987	rs16898691	30012220	Prins BP	2018-07-17	Genome Biol	Exome-chip meta-analysis identifies novel loci associated with cardiac conduction, including ADAMTS6.	QRS duration	77,898 European ancestry individuals	NA	8q24.13	KLHL38	rs16898691-G	0.0401012247223693	4E-15		0.9370439	[0.7-1.17] ms decrease	Illumina [213295]	N
1536	chr8	124669623	124669624	rs72711245	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q24.13	KLHL38	rs72711245-C	0.950381	9E-19	(-12 ms)	0.113776	[0.088-0.139] unit increase	Affymetrix [10000000] (imputed)	N
1536	chr8	124669623	124669624	rs72711245	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q24.13	KLHL38	rs72711245-C	0.950381	9E-12	(2 ms)	0.0869086	[0.062-0.112] unit increase	Affymetrix [10000000] (imputed)	N
1536	chr8	124669623	124669624	rs72711245	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q24.13	KLHL38	rs72711245-C	0.950381	8E-14	(6 ms)	0.0945172	[0.069-0.12] unit increase	Affymetrix [10000000] (imputed)	N
1536	chr8	124669623	124669624	rs72711245	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q24.13	KLHL38	rs72711245-C	0.950381	8E-13	(-4 ms)	0.0907442	[0.065-0.116] unit increase	Affymetrix [10000000] (imputed)	N
1536	chr8	124669623	124669624	rs72711245	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q24.13	KLHL38	rs72711245-C	0.950381	6E-12	(-2 ms)	0.0874701	[0.062-0.113] unit increase	Affymetrix [10000000] (imputed)	N
1536	chr8	124669623	124669624	rs72711245	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q24.13	KLHL38	rs72711245-C	0.950381	5E-18	(-10 ms)	0.110542	[0.085-0.136] unit increase	Affymetrix [10000000] (imputed)	N
1536	chr8	124669623	124669624	rs72711245	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q24.13	KLHL38	rs72711245-C	0.950381	5E-14	(10 ms)	0.0963292	[0.071-0.122] unit increase	Affymetrix [10000000] (imputed)	N
1536	chr8	124669623	124669624	rs72711245	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q24.13	KLHL38	rs72711245-C	0.950381	3E-18	(-14 ms)	0.112345	[0.087-0.138] unit increase	Affymetrix [10000000] (imputed)	N
1536	chr8	124669623	124669624	rs72711245	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q24.13	KLHL38	rs72711245-C	0.950381	3E-16	(-8 ms)	0.104308	[0.079-0.13] unit increase	Affymetrix [10000000] (imputed)	N
1536	chr8	124669623	124669624	rs72711245	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q24.13	KLHL38	rs72711245-C	0.950381	3E-16	(-16 ms)	0.106994	[0.082-0.132] unit increase	Affymetrix [10000000] (imputed)	N
1536	chr8	124669623	124669624	rs72711245	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q24.13	KLHL38	rs72711245-C	0.950381	2E-14	(-6 ms)	0.096767	[0.071-0.122] unit increase	Affymetrix [10000000] (imputed)	N
1536	chr8	124669623	124669624	rs72711245	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q24.13	KLHL38	rs72711245-C	0.950381	1E-14	(8 ms)	0.0979094	[0.073-0.123] unit increase	Affymetrix [10000000] (imputed)	N
1536	chr8	124669623	124669624	rs72711245	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q24.13	KLHL38	rs72711245-C	0.950381	1E-12	(4 ms)	0.0900468	[0.065-0.115] unit increase	Affymetrix [10000000] (imputed)	N
1536	chr8	124669623	124669624	rs72711245	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q24.13	KLHL38	rs72711245-C	0.950381	1E-11	(0 ms)	0.0860398	[0.061-0.111] unit increase	Affymetrix [10000000] (imputed)	N
1536	chr8	124672283	124672284	rs4871407	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	8q24.13		rs4871407-C	0.17	9E-9		5.75	z score increase	Affymetrix [9061022] (imputed)	N
1536	chr8	124673629	124673630	rs56123029	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	8q24.13	KLHL38	rs56123029-T	0.7845	2E-9		0.1918	[0.13-0.25] mmHg decrease	Affymetrix [NR] (imputed)	N
1536	chr8	124696866	124696867	rs2294015	21184583	Zlojutro M	2010-11-02	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of theta band event-related oscillations identifies serotonin receptor gene HTR7 influencing risk of alcohol dependence.	Event-related brain oscillations	431 European ancestry alcohol dependence cases, 340 European ancestry controls, 209 African American alcohol dependence cases, 84 African American controls	683 alcohol dependence cases and 412 controls from multiplex families	8q24.13	ANXA13	rs2294015-G	0.33	9E-6		0.211	[0.12-0.30] uV increase	Illumina [951071]	N
1536	chr8	124720260	124720261	rs74972376	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	8q24.13	NR	rs74972376-G	NR	5E-6	(GEE model)	1.1597	[0.66-1.66] unit increase	NR [NR] (imputed)	N
1536	chr8	124730028	124730029	rs7007076	26545240	Giri A	2015-11-06	PLoS One	Genetic Determinants of Pelvic Organ Prolapse among African American and Hispanic Women in the Women's Health Initiative.	Pelvic organ prolapse (moderate/severe)	154 African American cases, 948 African American controls, 163 Hispanic cases, 305 Hispanic controls	NA	8q24.13	ANXA13	rs7007076-C	0.21	9E-6		1.84		Affymetrix [at least 730985] (imputed)	N
1536	chr8	124738617	124738618	rs970821	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	8q24.13	NR	rs970821-T	0.401	2E-12	(EA)	0.0445	[0.032-0.057] unit increase	Illumina [~ 11800000] (imputed)	N
1536	chr8	124739708	124739709	rs7820881	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	8q24.13	ANXA13	rs7820881-G	0.622946	1E-9		0.0116491	[0.0079-0.0154] unit decrease	NR [13737936] (imputed)	N
1536	chr8	124757660	124757661	rs17350191	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	8q24.13		rs17350191-T	NR	1E-10		1.04	[1.03-1.05]	Affymetrix, Illumina [NR] (imputed)	N
1536	chr8	124757660	124757661	rs17350191	29058716	Milne RL	2017-10-23	Nat Genet	Identification of ten variants associated with risk of estrogen-receptor-negative breast cancer.	Breast cancer (estrogen-receptor negative)	14,135 European ancestry cases, 58,126 European ancestry controls	7,333 European ancestry cases, 42,468 European ancestry controls	8q24.13	ANXA13	rs17350191-T	0.34	2E-8		1.07	[1.04-1.09]	Illumina [~ 11500000] (imputed)	N
1536	chr8	124757660	124757661	rs17350191	29058716	Milne RL	2017-10-23	Nat Genet	Identification of ten variants associated with risk of estrogen-receptor-negative breast cancer.	Breast cancer	14,135 European ancestry ER- cases, 58,126 European ancestry controls, 7,784 European ancestry  BRCA1 carrrier cases, 7,782 European ancestry BRCA1 carrrier controls	7,333 European ancestry ER- cases, 42,468 European ancestry controls, 1,630 European ancestry BRCA1 carrrier cases, 1,712 European ancestry BRCA1 carrrier controls	8q24.13	ANXA13	rs17350191-T	0.34	2E-11		1.07	[1.04-1.09] (BCAC)	Illumina [~ 11500000] (imputed)	N
1536	chr8	124765701	124765702	rs10088262	20686608	Low SK	2010-07-29	PLoS One	Genome-wide association study of pancreatic cancer in Japanese population.	Pancreatic cancer	991 Japanese ancestry cases, 5,209 Japanese ancestry controls	NA	8q24.13	FAM91A1	rs10088262-A	0.34	4E-6	(dominant)	1.4	[1.21-1.61]	Illumina [420236]	N
1536	chr8	124778459	124778460	rs147735245	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	8q24.13	NR	rs147735245-?	NR	3E-8				Illumina [7760689] (imputed)	N
1537	chr8	124780823	124780824	rs12334564	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	8q24.13		rs12334564-A	NR	1E-8		0.0136	[0.0089-0.0183] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
1537	chr8	124831833	124831834	rs10481151	19734545	Need AC	2009-09-04	Hum Mol Genet	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA	8q24.13	FAM91A1	rs10481151-?	0.1414	4E-7	(PRM)			Illumina [475971]	N
1539	chr8	125108976	125108977	rs4870888	31164008	Mullins N	2019-06-05	Am J Psychiatry	GWAS of Suicide Attempt in Psychiatric Disorders and Association With Major Depression Polygenic Risk Scores.	Suicide attempts in major depressive disorder or bipolar disorder or schizophrenia	1,622 European ancestry attempters with major depressive disorder, 8,786 European ancestry nonattempters with major depressive disorder, 3,264 European ancestry attempters with bipolar disorder, 5,500 European ancestry nonattempters with bipolar disorder, 1,683 European ancestry attempters with schizophrenia, 2,946 European ancestry nonattempters with schizophrenia	NA	8q24.13	NR	rs4870888-C	0.45999999999999996	5E-7		1.1235955	[1.08-1.16]	NR [at least 8482392] (imputed)	N
1539	chr8	125108976	125108977	rs4870888	31164008	Mullins N	2019-06-05	Am J Psychiatry	GWAS of Suicide Attempt in Psychiatric Disorders and Association With Major Depression Polygenic Risk Scores.	Suicide attempts in major depressive disorder or bipolar disorder or schizophrenia	1,622 European ancestry attempters with major depressive disorder, 8,786 European ancestry nonattempters with major depressive disorder, 3,264 European ancestry attempters with bipolar disorder, 5,500 European ancestry nonattempters with bipolar disorder, 1,683 European ancestry attempters with schizophrenia, 2,946 European ancestry nonattempters with schizophrenia	NA	8q24.13	NR	rs4870888-C	0.45999999999999996	5E-7		1.1235955	[1.08-1.16]	NR [at least 8482392] (imputed)	N
1541	chr8	125336563	125336564	rs72711165	34237774	COVID-19 Host Genetics Initiative	2021-07-08	Nature	Mapping the human genetic architecture of COVID-19.	COVID-19 (hospitalized vs population)	790 African ancestry cases, 20,582 African ancestry controls, 60 Middle Eastern ancestry cases, 13,360 Middle Eastern ancestry controls, 1,414 East Asian ancestry cases, 15,499 East Asian ancestry controls, 9,986 European ancestry cases, 1,877,672 European ancestry controls, 186 South Asian ancestry cases, 43,280 South Asian ancestry controls, 1,678 Hispanic or Latin American cases, 100,316 Hispanic or Latin American controls	NA	8q24.13		rs72711165-C	0.01337	2E-9		1.369547	[1.2355706893674907-1.5180506428830653]	Affymetrix, Illumina [NR] (imputed)	N
1541	chr8	125418122	125418123	rs113248907	28701861	Randall CL	2017-06-15	Pain Res Manag	A Preliminary Genome-Wide Association Study of Pain-Related Fear: Implications for Orofacial Pain.	Fear of minor pain	Up to 1,367 European ancestry individuals, up to 159 African American individuals, up to 13 Hispanic individuals, up to 23 Asian, Native American and other ancestry individuals, up to 21 individuals	NA	8q24.13	TMEM65	rs113248907-A	0.01	2E-10		3.41	unit decrease	Illumina [8591557] (imputed)	N
1541	chr8	125429260	125429261	rs112510117	28701861	Randall CL	2017-06-15	Pain Res Manag	A Preliminary Genome-Wide Association Study of Pain-Related Fear: Implications for Orofacial Pain.	Fear of pain	Up to 1,367 European ancestry individuals, up to 159 African American individuals, up to 13 Hispanic individuals, up to 23 Asian, Native American and other ancestry individuals, up to 21 individuals	NA	8q24.13	NR	rs112510117-A	0.01	7E-7		8.44	unit decrease	Illumina [8591557] (imputed)	N
1542	chr8	125502439	125502440	rs12542260	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	8q24.13	Intergenic	rs12542260-?	NR	5E-7		1.47	[NR]	Affymetrix [492217] (imputed)	N
1542	chr8	125531352	125531353	rs114647118	30787307	Daya M	2019-02-20	Nat Commun	Association study in African-admixed populations across the Americas recapitulates asthma risk loci in non-African populations.	Adult asthma	4,235 African American Afro-Caribbean cases, 5,283 African American Afro-Caribbean controls, 2774 Hispanic cases, 2,362 Hispanic controls	NA	8q24.13	TATDN1	rs114647118-C	0.99	3E-7		2.08	[1.59-2.70]	Affymetrix, Illumina [23328733] (imputed)	N
1542	chr8	125563024	125563025	rs12335314	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	8q24.13	NR	rs12335314-?	NR	5E-8	(AA)	5.91	[4.54-7.28]	Illumina [905956]	N
1543	chr8	125582703	125582704	rs60490907	31872970	Harvey PD	2019-12-24	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of cognitive performance in U.S. veterans with schizophrenia or bipolar disorder.	Cognitive performance in schizophrenia or bipolar disorder	1,095 European ancestry individuals with schizophrenia, 2,864 European ancestry individuals with bipolar disorder, 1,594 African Americans with schizophrenia, 1,007 African Americans with bipolar disorder	NA	8q24.13	MTSS1	rs60490907-?	NR	1E-7	(AA)			Affymetrix [up to 6007810] (imputed)	N
1543	chr8	125605940	125605941	rs4871509	29626450	Bonfiglio F	2018-04-04	Gastroenterology	Female-specific Association Between Variants on Chromosome 9 and Self-reported Diagnosis of Irritable Bowel Syndrome.	Irritable bowel syndrome	7,130 British ancestry women cases, 2,446 British ancestry men cases, 178,076 British ancestry women controls, 158,423 British ancestry men controls	NA	8q24.13	MTSS1	rs4871509-A	0.446	2E-6		0.071	[0.042-0.1] unit increase	Affymetrix [7287191] (imputed)	N
1543	chr8	125683041	125683042	rs6470258	29478026	Shahin MH	2018-02-24	J Am Heart Assoc	Genome-Wide Association Approach Identified Novel Genetic Predictors of Heart Rate Response to ?-Blockers.	Heart rate response to beta blockers (atenolol monotherapy)	228 European American hypertensive individuals, 146 African American hypertensive individuals	NA	8q24.13	NR	rs6470258-C	0.8	6E-7	(AA)	5.63	[3.51-7.75] bpm decrease	Illumina [at least 1100000] (imputed)	N
1543	chr8	125683182	125683183	rs6470259	29478026	Shahin MH	2018-02-24	J Am Heart Assoc	Genome-Wide Association Approach Identified Novel Genetic Predictors of Heart Rate Response to ?-Blockers.	Heart rate response to beta blockers (atenolol monotherapy)	228 European American hypertensive individuals, 146 African American hypertensive individuals	NA	8q24.13	NR	rs6470259-A	0.78	7E-6	(AA)	4.21	[2.45-5.97] bpm decrease	Illumina [at least 1100000] (imputed)	N
1543	chr8	125697672	125697673	rs2116081	24684796	Cox AJ	2014-03-11	Neurobiol Aging	Heritability and genetic association analysis of cognition in the Diabetes Heart Study.	Cognitive function	423 type 2 diabetes cases and 127 unaffected siblings from 257 families	NA	8q24.13	MTSS1	rs2116081-T	0.429	6E-6	(Stroop)	0.1354	[0.077-0.194] unit increase	Affymetrix [> 371951] (imputed)	N
1544	chr8	125721365	125721366	rs11781525	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	8q24.13	NR	rs11781525-G	0.97440182935123	6E-6	(IGP59)	0.6033	[0.34-0.87] unit increase	Illumina [~ 2500000] (imputed)	N
1544	chr8	125722027	125722028	rs59811240	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque score in type 2 diabetes	691 African American individuals	205 African American individuals	8q24.13	MTSS1	rs59811240-?	NR	8E-7		1.356	[0.55-2.16] unit decrease	Illumina [at least 13000000] (imputed)	N
1544	chr8	125722027	125722028	rs59811240	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	8q24.13	MTSS1	rs59811240-?	NR	2E-6		0.214	[0.067-0.361] unit decrease	Illumina [at least 13000000] (imputed)	N
1544	chr8	125726375	125726376	rs75629841	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (90 or 130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	8q24.13	MTSS1	rs75629841-?	NR	1E-6		0.235	[0.096-0.374] unit decrease	Illumina [at least 13000000] (imputed)	N
1545	chr8	125829279	125829280	rs72716951	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	8q24.13	RP11-1082L8.4	rs72716951-C	0.039952	1E-9		0.035065018	[0.024-0.046] unit decrease	Affymetrix [93095623] (imputed)	N
1545	chr8	125851509	125851510	rs7003871	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	8q24.13	RP11-1082L8.3	rs7003871-T	0.66092	3E-10		0.014946055	[0.01-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1545	chr8	125852637	125852638	rs6980905	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8q24.13	ZNF572	rs6980905-?	NR	6E-6	(TAG 58:6)	0.2088294	[0.12-0.3] unit increase	Affymetrix [at least 2500000] (imputed)	N
1545	chr8	125857358	125857359	rs12541595	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Left ventricular global circumferential strain	19,260 European ancestry individuals	NA	8q24.13	MTSS1	rs12541595-G	0.6907	2E-9		0.2031	[0.14-0.27] unit increase	Affymetrix [~ 9500000] (imputed)	N
1545	chr8	125857358	125857359	rs12541595	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Left ventricular end-systolic volume	19,260 European ancestry individuals	NA	8q24.13	MTSS1	rs12541595-G	0.6907	4E-12		1.0024	[0.72-1.29] unit increase	Affymetrix [~ 9500000] (imputed)	N
1545	chr8	125857358	125857359	rs12541595	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Left ventricular ejection fraction	19,260 European ancestry individuals	NA	8q24.13	MTSS1	rs12541595-G	0.6907	6E-11		0.4022	[0.28-0.52] unit decrease	Affymetrix [~ 9500000] (imputed)	N
1545	chr8	125857358	125857359	rs12541595	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Dilated cardiomyopathy (MTAG)	5,521 cases, 397,323 controls	NA	8q24.13	MTSS1	rs12541595-G	0.69	2E-11		1.1004212	1.07-1.13	Affymetrix, Illumina [up to 7736182] (imputed)	N
1545	chr8	125857358	125857359	rs12541595	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q24.13	NR	rs12541595-T	0.347117	4E-11				Affymetrix, Illumina [24558453] (imputed)	N
1545	chr8	125857358	125857359	rs12541595	28394258	Wild PS	2017-04-10	J Clin Invest	Large-scale genome-wide analysis identifies genetic variants associated with cardiac structure and function.	Left ventricle diastolic internal dimension	30,201 European ancestry individuals	14,002 European ancestry individuals	8q24.13	MTSS1	rs12541595-T	0.3	2E-13		0.023	[0.017-0.029] cm decrease	Affymetrix, Illumina [at least 283291] (imputed)	N
1545	chr8	125858538	125858539	rs200712209	32382064	Pirruccello JP	2020-05-07	Nat Commun	Analysis of cardiac magnetic resonance imaging in 36,000 individuals yields genetic insights into dilated cardiomyopathy.	Left ventricular end-systolic volume	35,407 European ancestry individuals, 95 African ancestry individuals, 108 East Asian ancestry individuals, 303 South Asian ancestry individuals, 128 individuals	940 European ancestry individuals, 299 East Asian ancestry individuals, 507 African American individuals, 438 Hispanic individuals	8q24.13	MTSS1	rs200712209-?	NR	3E-13				Affymetrix [13660711] (imputed)	N
1545	chr8	125859816	125859817	rs35006907	32814899	Meyer HV	2020-08-19	Nature	Genetic and functional insights into the fractal structure of the heart.	Myocardial fractal dimension (slice 6)	18,096 European individuals		8q24.13	NR	rs35006907-A	0.31181	6E-9		0.066199	[0.044-0.088] unit increase	Affymetrix [14134301] (imputed)	N
1545	chr8	125859816	125859817	rs35006907	32814899	Meyer HV	2020-08-19	Nature	Genetic and functional insights into the fractal structure of the heart.	Myocardial fractal dimension (slice 5)	18,096 European individuals		8q24.13	NR	rs35006907-A	0.31181	3E-11		0.075434	[0.053-0.098] unit increase	Affymetrix [14134301] (imputed)	N
1545	chr8	125859816	125859817	rs35006907	32814899	Meyer HV	2020-08-19	Nature	Genetic and functional insights into the fractal structure of the heart.	Myocardial fractal dimension (slice 4)	18,096 European individuals		8q24.13	NR	rs35006907-A	0.31181	2E-7		0.058721	[0.036-0.081] unit increase	Affymetrix [14134301] (imputed)	N
1545	chr8	125859816	125859817	rs35006907	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	8q24.13	RP11-1082L8.3	rs35006907-A	0.31	2E-12		0.48	[0.34-0.62] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1545	chr8	125859816	125859817	rs35006907	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	8q24.13	MTSS1, LINC00964	rs35006907-A	0.33	3E-9		1.05	[1.03-1.06]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1545	chr8	125859816	125859817	rs35006907	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	8q24.13	MTSS1, LINC00964	rs35006907-A	0.31	3E-9	(EA)	1.05	[1.03-1.07]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1545	chr8	125859849	125859850	rs34866937	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q24.13	MTSS1	rs34866937-G	0.688305	7E-12	(10 ms)	0.0413803	[0.03-0.053] unit increase	Affymetrix [10000000] (imputed)	N
1545	chr8	125859849	125859850	rs34866937	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q24.13	MTSS1	rs34866937-G	0.688305	2E-8	(14 ms)	0.0341208	[0.022-0.046] unit increase	Affymetrix [10000000] (imputed)	N
1545	chr8	125859849	125859850	rs34866937	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q24.13	MTSS1	rs34866937-G	0.688305	2E-11	(8 ms)	0.0402091	[0.028-0.052] unit increase	Affymetrix [10000000] (imputed)	N
1545	chr8	125859849	125859850	rs34866937	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q24.13	MTSS1	rs34866937-G	0.688305	2E-10	(12 ms)	0.0390028	[0.027-0.051] unit increase	Affymetrix [10000000] (imputed)	N
1545	chr8	125859849	125859850	rs34866937	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	8q24.13	RP11-1082L8.3	rs34866937-A	0.314893	4E-16		0.019794747	[0.015-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1545	chr8	125859849	125859850	rs34866937	32382064	Pirruccello JP	2020-05-07	Nat Commun	Analysis of cardiac magnetic resonance imaging in 36,000 individuals yields genetic insights into dilated cardiomyopathy.	Left ventricular ejection fraction	35,407 European ancestry individuals, 95 African ancestry individuals, 108 East Asian ancestry individuals, 303 South Asian ancestry individuals, 128 individuals	940 European ancestry individuals, 299 East Asian ancestry individuals, 507 African American individuals, 438 Hispanic individuals	8q24.13	MTSS1	rs34866937-?	NR	1E-7				Affymetrix [13660711] (imputed)	N
1545	chr8	125859849	125859850	rs34866937	31554410	Aung N	2019-09-25	Circulation	Genome-Wide Analysis of Left Ventricular Image-Derived Phenotypes Identifies Fourteen Loci Associated with Cardiac Morphogenesis and Heart Failure Development.	Left ventricular ejection fraction	16,923 European ancestry individuals	1,742 European ancestry individuals, 1,083 African American individuals, 586 Chinese ancestry individuals, 972 Hispanic individuals	8q24.13	MTSS1	rs34866937-G	0.686	7E-11		0.0764623	[0.053-0.099] unit decrease	Affymetrix [~ 7000000] (imputed)	N
1545	chr8	125859849	125859850	rs34866937	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Relative wall thickness	19,311 Japanese ancestry individuals	NA	8q24.13	MIR4662B, LINC00964	rs34866937-?	NR	1E-8		0.059	[0.039-0.079] unit increase	Illumina [6108953] (imputed)	N
1545	chr8	125859849	125859850	rs34866937	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Left ventricular internal dimension in systole	19,586 Japanese ancestry individuals	NA	8q24.13	MIR4662B, LINC00964	rs34866937-?	NR	2E-13		0.07565	[0.056-0.096] unit decrease	Illumina [6108953] (imputed)	N
1545	chr8	125859849	125859850	rs34866937	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Left ventricular internal dimension in diastole	19,676 Japanese ancestry individuals	NA	8q24.13	MIR4662B, LINC00964	rs34866937-?	NR	2E-9		0.06155	[0.041-0.082] unit decrease	Illumina [6108953] (imputed)	N
1545	chr8	125859849	125859850	rs34866937	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Fractional shortening	19,580 Japanese ancestry individuals	NA	8q24.13	MIR4662B, LINC00964	rs34866937-?	NR	2E-13		0.07512	[0.055-0.095] unit increase	Illumina [6108953] (imputed)	N
1545	chr8	125859849	125859850	rs34866937	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Ejection fraction	19,516 Japanese ancestry individuals	NA	8q24.13	MIR4662B, LINC00964	rs34866937-?	NR	9E-16		0.0826	[0.062-0.103] unit increase	Illumina [6108953] (imputed)	N
1545	chr8	125867833	125867834	rs55679363	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	8q24.13	NR	rs55679363-T	0.314695	1E-11		0.013428	[0.0096-0.0173] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
1545	chr8	125867833	125867834	rs55679363	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	8q24.13	NR	rs55679363-T	0.314536	1E-13		0.014675	[0.011-0.019] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
1545	chr8	125867833	125867834	rs55679363	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	8q24.13	RP11-1082L8.3	rs55679363-T	0.3196	1E-12		0.505	[0.37-0.64] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1545	chr8	125876443	125876444	rs12542527	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	8q24.13	LINC00964	rs12542527-G	0.284632	4E-16		0.020344967	[0.015-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1545	chr8	125876443	125876444	rs12542527	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q24.13	NR	rs12542527-G	0.321185	2E-20				Affymetrix, Illumina [24588908] (imputed)	N
1545	chr8	125876443	125876444	rs12542527	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	8q24.13	NR	rs12542527-G	0.283216	9E-23		0.020429	[0.016-0.025] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1545	chr8	125898256	125898257	rs3935882	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	8q24.13		rs3935882-C	NR	9E-13		0.0145	[0.011-0.018] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1545	chr8	125901020	125901021	rs377267923	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8q24.13	NR	rs377267923-T	0.0122	2E-8	(S100A9)	0.2062	NR unit decrease	Illumina [1671387] (imputed)	N
1545	chr8	125909468	125909469	rs10216355	29698431	Roosenboom J	2018-04-26	PLoS One	Mapping genetic variants for cranial vault shape in humans.	Maximum cranial length	4,419 European ancestry individuals	NA	8q24.13	NR	rs10216355-T	0.1143	3E-6		0.7926	[0.23-1.36] unit increase	Illumina [at least 567677] (imputed)	N
1545	chr8	125950288	125950289	rs2590663	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8q24.13	SQLE	rs2590663-?	NR	6E-6	(F1P; F6P; G1P; G6P)	0.21114604	[0.12-0.3] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1546	chr8	125979576	125979577	rs2382999	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (negative Marder score)	1,390 European ancestry cases	NA	8q24.13		rs2382999-G	NR	3E-7	(GLM)	1.8534	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
1546	chr8	125991724	125991727	rs201584991	30487263	Pollack S	2018-11-28	Diabetes	Multiethnic Genome-wide Association Study of Diabetic Retinopathy using Liability Threshold Modeling of Duration of Diabetes and Glycemic Control.	Proliferative diabetic retinopathy (vs no DR)	398 European ancestry cases, 1,970 European ancestry controls, 1,097 African American cases, 941 African American controls	1,354 East Asian ancestry cases, 1130 East Asian ancestry controls, 801 European ancestry cases, 2,880 European ancestry controls, 232 Hispanic cases, 1,048 Hispanic controls	8q24.13	NR	rs201584991-?	NR	1E-6	(AA, adjusted for duration of diabetes and glycemic control)	1.63	[NR]	Affymetrix, Illumina [NR] (imputed)	N
1546	chr8	126001026	126001027	rs6987181	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	8q24.13	NR	rs6987181-G	0.0391232	6E-12		0.0548678	[0.039-0.071] unit decrease	NR [19129689] (imputed)	N
1546	chr8	126013133	126013134	rs13268726	24931836	Diekstra FP	2014-06-27	Ann Neurol	C9orf72 and UNC13A are shared risk loci for amyotrophic lateral sclerosis and frontotemporal dementia: a genome-wide meta-analysis.	Amyotrophic lateral sclerosis	4,377 European ancestry cases, 13,017 European ancestry controls	NA	8q24.13	SQLE, KIAA0196, NSMCE2	rs13268726-?	0.10	5E-6		1.25	[NR]	Illumina [~ 1400000] (imputed)	N
1546	chr8	126082564	126082565	rs12546767	24931836	Diekstra FP	2014-06-27	Ann Neurol	C9orf72 and UNC13A are shared risk loci for amyotrophic lateral sclerosis and frontotemporal dementia: a genome-wide meta-analysis.	Amyotrophic lateral sclerosis or frontotemporal dementia	4,377 European ancestry ALS cases, 435 European ancestry FTD cases, 14,431 European ancestry controls	4,056 European ancestry ALS cases, 3,958 European ancestry controls	8q24.13	SQLE, NSMCE2, KIAA0196	rs12546767-?	0.90	1E-7		1.22	[NR]	Illumina [~ 1400000] (imputed)	N
1547	chr8	126124377	126124378	rs59513985	30694715	Sakornsakolpat P	2019-01-29	Am J Respir Cell Mol Biol	Genome-Wide Association Analysis of Single Breath Diffusing Capacity of Carbon Monoxide (DLCO).	Diffusing capacity of carbon monoxide	2,584 European ancestry individuals with chronic obstructive pulmonary disease, 3,002 European ancestry healthy individuals, 343 African American individuals with chronic obstructive pulmonary disease, 1,006 African American healthy individuals	NA	8q24.13	NSMCE2	rs59513985-C	0.08	7E-6	(African American)	0.35	0.2-0.5 unit decrease	Illumina [NR] (imputed)	N
1547	chr8	126210743	126210744	rs112772376	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	8q24.13		rs112772376-?	NR	3E-10				NR [~ 8900000] (imputed)	N
1548	chr8	126243099	126243100	rs16900452	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	8q24.13		rs16900452-?	NR	9E-8				NR [~ 8900000] (imputed)	N
1548	chr8	126244605	126244605	rs543929820	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	8q24.13	NSMCE2	rs543929820-CA	0.082786	2E-12		0.028794989	[0.021-0.037] unit increase	Affymetrix [93095623] (imputed)	N
1548	chr8	126244605	126244605	rs543929820	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	8q24.13	NSMCE2	rs543929820-CA	0.082785	2E-10		0.025972495	[0.018-0.034] unit increase	Affymetrix [93095623] (imputed)	N
1548	chr8	126248621	126248623	rs201447509	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (negative Marder score)	1,390 European ancestry cases	NA	8q24.13		rs201447509-ATC	NR	1E-6	(GLM)	1.8871	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
1548	chr8	126323786	126323787	rs4466418	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	8q24.13		rs4466418-A	0.444987	8E-26		1.0458332	[1.04-1.05]	Affymetrix, Illumina [9851866] (imputed)	N
1548	chr8	126324431	126324432	rs17403327	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	8q24.13	NSMCE2	rs17403327-C	NR	8E-9		0.019512	[0.013-0.026] unit decrease	Affymetrix [319769] (imputed)	N
1548	chr8	126324431	126324432	rs17403327	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	8q24.13	NSMCE2	rs17403327-C	NR	8E-9		0.0194894	[0.013-0.026] unit decrease	Affymetrix [319769] (imputed)	N
1548	chr8	126324431	126324432	rs17403327	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8q24.13	NSMCE2	rs17403327-C	NR	4E-8		0.018764	[0.012-0.025] unit decrease	Affymetrix [321114] (imputed)	N
1548	chr8	126330806	126330807	rs7015753	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	8q24.13		rs7015753-G	NR	9E-15		0.0152	[0.011-0.019] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
1548	chr8	126333911	126333912	rs4871580	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8q24.13	TRIB1	rs4871580-?	NR	8E-6	(anthranilic acid)	0.47612324	[0.27-0.69] unit increase	Affymetrix [at least 2500000] (imputed)	N
1548	chr8	126338170	126338171	rs11778726	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	8q24.13		rs11778726-?	NR	1E-15				NR [~ 8900000] (imputed)	N
1548	chr8	126339941	126339942	rs4871582	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	8q24.13		rs4871582-G	NR	2E-19		0.0197	[0.015-0.024] unit increase	Affymetrix, Illumina [20529698] (imputed)	N
1548	chr8	126339941	126339942	rs4871582	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	8q24.13	NR	rs4871582-T	0.443991	3E-24		0.0210855	[0.017-0.025] unit decrease	NR [NR]	N
1548	chr8	126343519	126343520	rs7010394	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	8q24.13	NSMCE2	rs7010394-C	0.543115	3E-13		0.016581351	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1548	chr8	126343519	126343520	rs7010394	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	8q24.13	NSMCE2	rs7010394-C	0.543064	2E-15		0.018055739	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1548	chr8	126343519	126343520	rs7010394	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	8q24.13	NSMCE2	rs7010394-C	0.542887	5E-14		0.016770331	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1548	chr8	126343562	126343563	rs6990622	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q24.13	NR	rs6990622-A	0.525465	6E-17				Affymetrix, Illumina [24649327] (imputed)	N
1548	chr8	126343562	126343563	rs6990622	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	8q24.13	NR	rs6990622-A	0.545348	5E-15		0.014483	[0.011-0.018] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
1548	chr8	126344207	126344208	rs2891677	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	up to 92,771 European ancestry males, up to 113,387 European ancestry females	NA	8q24.13	NSMCE2	rs2891677-C	0.46	2E-8		0.02	[0.012-0.028] unit decrease	Affymetrix, Illumina, Perlegen [2437193] (imputed)	N
1548	chr8	126344792	126344793	rs79634415	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	8q24.13	NR	rs79634415-T	NR	4E-10		0.026	[0.018-0.034] unit decrease	Affymetrix [9000000] (imputed)	N
1548	chr8	126345401	126345402	rs34480931	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	8q24.13	NSMCE2	rs34480931-C	0.549321	3E-14		0.016906252	[0.013-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1548	chr8	126346976	126346977	rs2385092	33393726	Ortiz Fernandez L	2021-01-04	Arthritis Rheumatol	Genetic association of a gain of function interferon gamma receptor 1 (IFNGR1) polymorphism and the intergenic region LNCAROD/DKK1 with Behcet's disease.	Behcet's disease	2,344 Turkish ancestry cases, 1,920 Turkish ancestry controls, 437 European ancestry cases, 3,325 European ancestry controls, 312 East Asian ancestry cases, 398 East Asian ancestry controls, 104 Tunisian ancestry cases, 142 Tunisian ancestry controls	NA	8q24.13	NSMCE2	rs2385092-A	NR	1E-5		0.8521	NR	Illumina [up to 1244428] (imputed)	N
1549	chr8	126356448	126356449	rs2385094	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	8q24.13	NSMCE2	rs2385094-C	0.121998	5E-13		0.024564266	[0.018-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
1549	chr8	126356448	126356449	rs2385094	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q24.13	NR	rs2385094-C	0.129858	1E-16				Affymetrix, Illumina [23467995] (imputed)	N
1549	chr8	126356448	126356449	rs2385094	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	8q24.13	NR	rs2385094-C	0.122214	1E-16		0.023922	[0.018-0.03] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1549	chr8	126384943	126384944	rs113012790	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	8q24.13		rs113012790-?	NR	6E-9				NR [~ 8900000] (imputed)	N
1549	chr8	126386344	126386345	rs7004876	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	8q24.13	NR	rs7004876-A	0.107	8E-6	(IFNalpha_CXCL10_of_CD56dimCD16p)			Illumina [5084123] (imputed)	N
1549	chr8	126409613	126409614	rs7826246	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	8q24.13	NSMCE2	rs7826246-A	0.900338	4E-8		0.0199647	[0.013-0.027] unit decrease	Affymetrix [NR] (imputed)	N
1549	chr8	126444267	126444268	rs55637010	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	8q24.13	NR	rs55637010-A	NR	5E-12		0.0351	[0.025-0.045] unit decrease	Affymetrix [9000000] (imputed)	N
1549	chr8	126444267	126444268	rs55637010	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	8q24.13	NR	rs55637010-A	NR	3E-10		0.0321	[0.022-0.042] unit decrease	Affymetrix [9000000] (imputed)	N
1549	chr8	126444267	126444268	rs55637010	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	8q24.13	NR	rs55637010-A	NR	5E-11		0.0333	[0.023-0.043] unit decrease	Affymetrix [9000000] (imputed)	N
1549	chr8	126444267	126444268	rs55637010	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	8q24.13	NR	rs55637010-A	NR	2E-12		0.0358	[0.026-0.046] unit decrease	Affymetrix [9000000] (imputed)	N
1549	chr8	126444787	126444788	rs2980874	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	8q24.13	NR	rs2980874-A	NR	1E-42		0.0337	[0.029-0.039] unit decrease	Affymetrix [9000000] (imputed)	N
1549	chr8	126444787	126444788	rs2980874	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	8q24.13	NR	rs2980874-A	NR	3E-25		0.0255	[0.021-0.03] unit decrease	Affymetrix [9000000] (imputed)	N
1549	chr8	126444787	126444788	rs2980874	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	8q24.13	NR	rs2980874-A	NR	2E-10		0.0156	[0.011-0.02] unit decrease	Affymetrix [9000000] (imputed)	N
1549	chr8	126444787	126444788	rs2980874	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	8q24.13	NR	rs2980874-A	NR	2E-25		0.0257	[0.021-0.031] unit decrease	Affymetrix [9000000] (imputed)	N
1549	chr8	126444787	126444788	rs2980874	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	8q24.13	NR	rs2980874-A	NR	3E-9		0.0146	[0.0097-0.0195] unit decrease	Affymetrix [9000000] (imputed)	N
1549	chr8	126444787	126444788	rs2980874	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	8q24.13	NR	rs2980874-A	NR	2E-31		0.0287	[0.024-0.034] unit decrease	Affymetrix [9000000] (imputed)	N
1549	chr8	126445054	126445055	rs72647336	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	8q24.13		rs72647336-G	0.943086	3E-12		0.0632699	[0.045-0.081] unit decrease	NR [11722792] (imputed)	N
1549	chr8	126445054	126445055	rs72647336	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	8q24.13		rs72647336-G	0.943086	2E-12		0.0654205	[0.047-0.084] unit decrease	NR [11722792] (imputed)	N
1549	chr8	126445054	126445055	rs72647336	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	8q24.13		rs72647336-G	0.943086	1E-9		0.0554278	[0.038-0.073] unit decrease	NR [11722792] (imputed)	N
1549	chr8	126445054	126445055	rs72647336	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	8q24.13		rs72647336-G	0.943086	3E-10		0.0582378	[0.04-0.076] unit decrease	NR [11722792] (imputed)	N
1549	chr8	126445054	126445055	rs72647336	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	8q24.13		rs72647336-G	0.943086	2E-9		0.0549134	[0.037-0.073] unit increase	NR [11722792] (imputed)	N
1549	chr8	126445054	126445055	rs72647336	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	8q24.13		rs72647336-G	0.943086	2E-10		0.0579883	[0.04-0.076] unit increase	NR [11722792] (imputed)	N
1549	chr8	126445054	126445055	rs72647336	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	8q24.13		rs72647336-G	0.943086	6E-9		0.0556023	[0.037-0.074] unit increase	NR [11722792] (imputed)	N
1549	chr8	126445054	126445055	rs72647336	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	8q24.13		rs72647336-G	0.943086	1E-12		0.0637706	[0.046-0.081] unit increase	NR [11722792] (imputed)	N
1549	chr8	126445054	126445055	rs72647336	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	8q24.13		rs72647336-G	0.943055	2E-11		0.0619984	[0.044-0.08] unit increase	NR [11722792] (imputed)	N
1549	chr8	126445054	126445055	rs72647336	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	8q24.13		rs72647336-G	0.943086	8E-13		0.0643267	[0.047-0.082] unit increase	NR [11722792] (imputed)	N
1549	chr8	126445054	126445055	rs72647336	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	8q24.13		rs72647336-G	0.943086	5E-12		0.0627066	[0.045-0.08] unit increase	NR [11722792] (imputed)	N
1549	chr8	126445054	126445055	rs72647336	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	8q24.13		rs72647336-G	0.943055	3E-11		0.0611806	[0.043-0.079] unit increase	NR [11722792] (imputed)	N
1549	chr8	126445054	126445055	rs72647336	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	8q24.13		rs72647336-G	0.943086	2E-11		0.0607977	[0.043-0.078] unit increase	NR [11722792] (imputed)	N
1549	chr8	126445054	126445055	rs72647336	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	8q24.13	TRIB1	rs72647336-G	0.943372	2E-23		0.0441541	[0.035-0.053] unit increase	Affymetrix [NR] (imputed)	N
1549	chr8	126445054	126445055	rs72647336	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	8q24.13	TRIB1	rs72647336-G	0.943368	5E-8		0.0249996	[0.016-0.034] unit increase	Affymetrix [NR] (imputed)	N
1549	chr8	126445054	126445055	rs72647336	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	8q24.13	NR	rs72647336-?	NR	7E-20				Affymetrix [~ 8270000] (imputed)	N
1549	chr8	126445054	126445055	rs72647336	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	8q24.13	NR	rs72647336-?	NR	6E-9				Affymetrix [~ 8270000] (imputed)	N
1549	chr8	126447307	126447308	rs2385114	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	8q24.13		rs2385114-?	NR	3E-11		0.00613473	[0.0043-0.0079] unit decrease	NR [NR]	N
1549	chr8	126447307	126447308	rs2385114	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	8q24.13	TRIB1	rs2385114-T	NR	3E-11		0.0189718	[0.013-0.025] unit increase	Affymetrix [319769] (imputed)	N
1549	chr8	126447307	126447308	rs2385114	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	8q24.13	TRIB1	rs2385114-T	NR	3E-11		0.0189957	[0.013-0.025] unit increase	Affymetrix [319769] (imputed)	N
1549	chr8	126447307	126447308	rs2385114	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	8q24.13	TRIB1	rs2385114-T	NR	1E-10		0.0186122	[0.013-0.024] unit increase	Affymetrix [321169] (imputed)	N
1549	chr8	126447839	126447840	rs10094698	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	8q24.13	TRIB1	rs10094698-G	NR	2E-18		0.0320783	[0.025-0.039] unit increase	Affymetrix [319769] (imputed)	N
1549	chr8	126447839	126447840	rs10094698	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	8q24.13	TRIB1	rs10094698-G	NR	2E-18		0.0319269	[0.025-0.039] unit increase	Affymetrix [319769] (imputed)	N
1549	chr8	126447839	126447840	rs10094698	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8q24.13	TRIB1	rs10094698-G	NR	8E-12		0.0252014	[0.018-0.032] unit increase	Affymetrix [321114] (imputed)	N
1549	chr8	126447839	126447840	rs10094698	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	8q24.13	TRIB1	rs10094698-G	NR	2E-18		0.0322889	[0.025-0.04] unit increase	Affymetrix [321169] (imputed)	N
1549	chr8	126448844	126448845	rs62521034	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	8q24.13	NR	rs62521034-T	NR	1E-24		0.031	[0.025-0.037] unit decrease	Affymetrix [9000000] (imputed)	N
1549	chr8	126448844	126448845	rs62521034	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	8q24.13	NR	rs62521034-T	NR	3E-16		0.0258	[0.02-0.032] unit increase	Affymetrix [9000000] (imputed)	N
1549	chr8	126449405	126449406	rs17405319	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	8q24.13	NR	rs17405319-T	NR	2E-44		0.0434	[0.037-0.049] unit increase	Affymetrix [9000000] (imputed)	N
1549	chr8	126449405	126449406	rs17405319	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	8q24.13	NR	rs17405319-T	NR	2E-26		0.0329	[0.027-0.039] unit increase	Affymetrix [9000000] (imputed)	N
1549	chr8	126449405	126449406	rs17405319	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	8q24.13	NR	rs17405319-T	NR	4E-18		0.0269	[0.021-0.033] unit increase	Affymetrix [9000000] (imputed)	N
1549	chr8	126449405	126449406	rs17405319	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	8q24.13	NR	rs17405319-T	NR	3E-29		0.0348	[0.029-0.041] unit increase	Affymetrix [9000000] (imputed)	N
1549	chr8	126449405	126449406	rs17405319	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	8q24.13	NR	rs17405319-T	NR	2E-34		0.038	[0.032-0.044] unit increase	Affymetrix [9000000] (imputed)	N
1549	chr8	126449405	126449406	rs17405319	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	8q24.13	NR	rs17405319-?	NR	4E-14				Affymetrix [~ 8270000] (imputed)	N
1549	chr8	126453910	126453911	rs35456930	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	8q24.13	RN7SL590P	rs35456930-A	NR	9E-14		0.0240959	[0.018-0.03] unit increase	Affymetrix [319769] (imputed)	N
1549	chr8	126453910	126453911	rs35456930	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	8q24.13	RN7SL590P	rs35456930-A	NR	4E-14		0.0244683	[0.018-0.031] unit increase	Affymetrix [319769] (imputed)	N
1549	chr8	126459989	126459990	rs4871598	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8q24.13	RN7SL590P	rs4871598-A	NR	3E-8		0.0178358	[0.012-0.024] unit increase	Affymetrix [321114] (imputed)	N
1549	chr8	126459989	126459990	rs4871598	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	8q24.13	RN7SL590P	rs4871598-A	NR	2E-14		0.0246869	[0.018-0.031] unit increase	Affymetrix [321169] (imputed)	N
1549	chr8	126463364	126463365	rs10808545	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	8q24.13	RN7SL590P	rs10808545-A	NR	3E-13		0.0213739	[0.016-0.027] unit increase	Affymetrix [321169] (imputed)	N
1549	chr8	126467085	126467086	rs6984241	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	8q24.13	RN7SL590P	rs6984241-T	NR	8E-16		0.0233056	[0.018-0.029] unit increase	Affymetrix [319769] (imputed)	N
1549	chr8	126467085	126467086	rs6984241	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	8q24.13	RN7SL590P	rs6984241-T	NR	4E-16		0.0235371	[0.018-0.029] unit increase	Affymetrix [319769] (imputed)	N
1549	chr8	126467961	126467962	rs142177774	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	8q24.13	NR	rs142177774-?	NR	3E-11				Affymetrix [~ 8270000] (imputed)	N
1549	chr8	126469423	126469424	rs79336077	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	8q24.13	NR	rs79336077-A	NR	3E-9		0.062	[0.042-0.082] unit decrease	Affymetrix [9000000] (imputed)	N
1549	chr8	126471273	126471274	rs60089934	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	8q24.13	TRIB1	rs60089934-A	0.378	3E-9		1.04	[1.03-1.06]	Affymetrix, Illumina [11800000] (imputed)	N
1549	chr8	126471576	126471577	rs4871601	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	8q24.13	NR	rs4871601-G	NR	5E-24		0.0506	[0.041-0.06] unit increase	Affymetrix [9000000] (imputed)	N
1549	chr8	126471576	126471577	rs4871601	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	8q24.13	NR	rs4871601-G	NR	5E-16		0.0407	[0.031-0.05] unit increase	Affymetrix [9000000] (imputed)	N
1549	chr8	126471576	126471577	rs4871601	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	8q24.13	NR	rs4871601-G	NR	9E-13		0.0358	[0.026-0.046] unit increase	Affymetrix [9000000] (imputed)	N
1549	chr8	126471576	126471577	rs4871601	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	8q24.13	NR	rs4871601-G	NR	2E-15		0.0398	[0.03-0.05] unit increase	Affymetrix [9000000] (imputed)	N
1549	chr8	126471576	126471577	rs4871601	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	8q24.13	NR	rs4871601-G	NR	4E-9		0.0294	[0.02-0.039] unit increase	Affymetrix [9000000] (imputed)	N
1549	chr8	126471576	126471577	rs4871601	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	8q24.13	NR	rs4871601-G	NR	3E-17		0.0425	[0.033-0.052] unit increase	Affymetrix [9000000] (imputed)	N
1549	chr8	126471576	126471577	rs4871601	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	8q24.13	NR	rs4871601-G	NR	5E-14		0.0377	[0.028-0.048] unit increase	Affymetrix [9000000] (imputed)	N
1549	chr8	126474305	126474306	rs2980885	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	8q24.13	TRIB1	rs2980885-?	NR	9E-11	(M_VLDL_C)	0.078615375	NR unit increase	Illumina [609262]	N
1549	chr8	126474305	126474306	rs2980885	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	8q24.13	TRIB1	rs2980885-?	NR	8E-11	(S_VLDL_L)	0.06090151	NR unit increase	Illumina [609262]	N
1549	chr8	126474305	126474306	rs2980885	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	8q24.13	TRIB1	rs2980885-?	NR	4E-10	(M_VLDL_CE)	0.083206296	NR unit increase	Illumina [609262]	N
1549	chr8	126474305	126474306	rs2980885	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	8q24.13	TRIB1	rs2980885-?	NR	2E-10	(ApoB)	0.058832645	NR unit increase	Illumina [609262]	N
1549	chr8	126474305	126474306	rs2980885	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	8q24.13	TRIB1	rs2980885-?	NR	7E-9	(S_VLDL_L)	0.0854873	NR unit increase	Illumina [609262]	N
1549	chr8	126474305	126474306	rs2980885	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	8q24.13	TRIB1	rs2980885-?	NR	3E-9	(M_VLDL_CE)	0.086885616	NR unit increase	Illumina [609262]	N
1549	chr8	126474305	126474306	rs2980885	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	8q24.13	TRIB1	rs2980885-?	NR	3E-9	(M_VLDL_C)	0.087027036	NR unit increase	Illumina [609262]	N
1549	chr8	126474305	126474306	rs2980885	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	Triglyceride levels	up to 23,508 African ancestry individuals, 4,649 Asian ancestry individuals, up to 77,047 European ancestry individuals, 6,705 Hispanic individuals	NA	8q24.13		rs2980885-A	0.7761	8E-12	(EA)	0.022	[0.016-0.028] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1549	chr8	126474305	126474306	rs2980885	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	HDL cholesterol levels	up to 23,761 African ancestry individuals, 13,171 Asian ancestry individuals, up to 90,272 European ancestry individuals, 6,620 Hispanic individuals	NA	8q24.13		rs2980885-A	0.7763	3E-7	(EA)	0.008	[0.0049-0.0111] unit increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1549	chr8	126474355	126474356	rs2980884	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	White blood cell count (basophil)	62,076 Japanese ancestry individuals	NA	8q24.13	TRIB1, LINC00861	rs2980884-?	NR	2E-8		0.03688	[0.024-0.05] unit increase novel	Illumina [6108953] (imputed)	N
1549	chr8	126475769	126475770	rs6999569	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	8q24.13	TRIB1	rs6999569-A	0.529262	2E-412		0.086226	[0.082-0.09] unit increase	Affymetrix [NR] (imputed)	N
1549	chr8	126476872	126476873	rs2954017	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	8q24.13		rs2954017-T	0.47896	3E-15		0.03255	[0.024-0.041] unit decrease	NR [11722792] (imputed)	N
1549	chr8	126476872	126476873	rs2954017	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	8q24.13		rs2954017-C	NR	6E-22		0.0199	[0.016-0.024] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
1549	chr8	126476872	126476873	rs2954017	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	120,539 East Asian ancestry individuals	NA	8q24.13		rs2954017-C	0.563014	7E-9		0.0219103	[0.014-0.029] unit decrease	Illumina [13474682] (imputed)	N
1549	chr8	126476872	126476873	rs2954017	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	8q24.13	TRIB1	rs2954017-T	0.4575	5E-18		0.0024	[0.0018-0.003] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
1549	chr8	126476872	126476873	rs2954017	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	8q24.13	TRIB1	rs2954017-T	0.4644	3E-16		0.0026	[0.0018-0.0034] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
1549	chr8	126477115	126477116	rs11781960	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	8q24.13	NR	rs11781960-C	NR	4E-11		0.0509	[0.036-0.066] unit decrease	Affymetrix [9000000] (imputed)	N
1549	chr8	126477115	126477116	rs11781960	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	8q24.13	NR	rs11781960-C	NR	2E-13		0.0566	[0.042-0.072] unit decrease	Affymetrix [9000000] (imputed)	N
1549	chr8	126477115	126477116	rs11781960	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	8q24.13	NR	rs11781960-C	NR	2E-10		0.049	[0.034-0.064] unit decrease	Affymetrix [9000000] (imputed)	N
1549	chr8	126477115	126477116	rs11781960	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	8q24.13	NR	rs11781960-C	NR	2E-11		0.0517	[0.037-0.067] unit decrease	Affymetrix [9000000] (imputed)	N
1549	chr8	126477496	126477497	rs2980854	34841290	Ghodsian N	2021-11-03	Cell Rep Med	Electronic health record-based genome-wide meta-analysis provides insights on the genetic architecture of non-alcoholic fatty liver disease.	Nonalcoholic fatty liver disease	8,434 European ancestry cases, 770,180 European ancestry controls	NA	8q24.13	TRIB1	rs2980854-?	NR	1E-10		0.1008258	[0.069-0.133] unit decrease	NR [6787908] (imputed)	N
1549	chr8	126477977	126477978	rs2001945	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	8q24.13	NR	rs2001945-?	NR	2E-17		0.0361316	[0.028-0.044] unit decrease	Illumina [31978265] (imputed)	N
1549	chr8	126477977	126477978	rs2001945	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	8q24.13	NR	rs2001945-?	NR	9E-8		1.953379	[1.24-2.67] unit decrease	Illumina [32003504] (imputed)	N
1549	chr8	126477977	126477978	rs2001945	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	8q24.13	NR	rs2001945-?	NR	9E-7		1.599381	[0.96-2.24] unit decrease	Illumina [31808917] (imputed)	N
1549	chr8	126477977	126477978	rs2001945	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	8q24.13	NR	rs2001945-?	NR	7E-6		0.5251367	[0.3-0.75] unit increase	Illumina [31978362] (imputed)	N
1549	chr8	126477977	126477978	rs2001945	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	8q24.13	TRIB1	rs2001945-G	0.4361	4E-11		6.591	NR z score increase	Illumina [26237160] (imputed)	N
1549	chr8	126477977	126477978	rs2001945	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	8q24.13	TRIB1	rs2001945-C	0.546	2E-9		0.264	[0.086-0.442] ml/min/1.73m2 decrease	Affymetrix, Illumina [at least 5248638] (imputed)	N
1549	chr8	126477977	126477978	rs2001945	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI in non-smokers	75,379 European ancestry women, 45,811 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	8q24.13	TRIB1	rs2001945-G	0.46	6E-7	(AA, women)	0.014	[0.0081-0.0199] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1549	chr8	126477977	126477978	rs2001945	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (joint analysis main effects and smoking interaction)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	8q24.13	TRIB1	rs2001945-G	0.484	2E-6	(women)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1549	chr8	126477977	126477978	rs2001945	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	8q24.13	TRIB1	rs2001945-G	0.484	1E-9	(AA, women)	0.022	[0.014-0.03] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1549	chr8	126477977	126477978	rs2001945	21909109	Kim YJ	2011-09-11	Nat Genet	Large-scale genome-wide association studies in East Asians identify new genetic loci influencing metabolic traits.	Triglycerides	12,545 Korean ancestry individuals	Up to 30,395 East Asian ancestry individuals	8q24.13	intergenic	rs2001945-C	0.42	1E-20		0.0405	[0.032-0.049] mg/dL increase	Affymetrix [~ 2200000] (imputed)	N
1549	chr8	126478349	126478350	rs2980853	27790247	He L	2016-11-03	Front Genet	Pleiotropic Meta-Analyses of Longitudinal Studies Discover Novel Genetic Variants Associated with Age-Related Diseases.	Age-related diseases, mortality and associated endophenotypes	9,618 European ancestry individuals	19,796 European ancestry individuals	8q24.13	NR	rs2980853-?	NR	3E-18				Affymetrix [NR]	N
1549	chr8	126478349	126478350	rs2980853	27790247	He L	2016-11-03	Front Genet	Pleiotropic Meta-Analyses of Longitudinal Studies Discover Novel Genetic Variants Associated with Age-Related Diseases.	Age-related disease endophenotypes	9,618 European ancestry individuals	19,796 European ancestry individuals	8q24.13	NR	rs2980853-?	NR	2E-22				Affymetrix [NR]	N
1549	chr8	126478449	126478450	rs2001846	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	72,866 East Asian ancestry individuals	NA	8q24.13		rs2001846-C	0.561474	5E-10		0.0300605	[0.021-0.04] unit decrease	Illumina [13461863] (imputed)	N
1549	chr8	126478449	126478450	rs2001846	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	8q24.13	intergenic	rs2001846-T	0.4479	3E-82		0.0539	[0.048-0.059] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1549	chr8	126478449	126478450	rs2001846	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Low density lipoprotein cholesterol levels	72,866 Japanese ancestry individuals	NA	8q24.13	TRIB1, LINC00861	rs2001846-?	NR	6E-9		0.03046	[0.02-0.041] unit decrease novel	Illumina [6108953] (imputed)	N
1549	chr8	126478449	126478450	rs2001846	26343387	Nikpay M	2015-09-07	Nat Genet	A comprehensive 1,000 Genomes-based genome-wide association meta-analysis of coronary artery disease.	Myocardial infarction	27,509 European ancestry cases, 130 African American cases, 278 Hispanic American cases, 10,257 South Asian ancestry cases, 288 Lebanese ancestry cases, 1,687 East Asian ancestry cases, 99,121 European ancestry controls, 2,778 African American controls, 3,337 Hispanic American controls, 12,899 South Asian ancestry controls, 466 Lebanese ancestry controls, 7,709 East Asian ancestry controls	NA	8q24.13	TRIB1	rs2001846-T	0.49	9E-7		1.05	[1.03-1.07]	Affymetrix, Illumina [8600000] (imputed)	N
1549	chr8	126479314	126479315	rs6982636	19936222	Chasman DI	2009-11-20	PLoS Genet	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry female individuals	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	8q24.13	TRIB1	rs6982636-?	NR	7E-12	(APOB.assay, whole)	1.95	[NR] unit decrease	Illumina [335603]	N
1549	chr8	126479314	126479315	rs6982636	19936222	Chasman DI	2009-11-20	PLoS Genet	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry female individuals	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	8q24.13	TRIB1	rs6982636-?	NR	1E-9	(TG.assay, whole)	0.033	[NR] unit decrease	Illumina [335603]	N
1549	chr8	126479361	126479362	rs6982502	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	135,808 East Asian ancestry individuals	NA	8q24.13		rs6982502-T	0.564434	4E-20		0.0329372	[0.026-0.04] unit decrease	Illumina [13476599] (imputed)	N
1549	chr8	126479361	126479362	rs6982502	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	133,321 East Asian ancestry individuals	NA	8q24.13		rs6982502-T	0.564278	3E-8		0.0209194	[0.014-0.028] unit decrease	Illumina [13477433] (imputed)	N
1549	chr8	126479361	126479362	rs6982502	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x short total sleep time interaction (2df test)	2,974 African American short sleepers, 365 Chinese ancestry short sleepers, 110 Asian ancestry short sleepers, at least 8,230 European ancestry short sleepers, 1,079 Hispanic/Latino short sleepers, 11,801 African American controls, 1,425 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,097 European ancestry controls, 4,023 Hispanic/Latino controls	at least 214 African American short sleepers, 629 East Asian ancestry short sleepers, up to 6,761 European ancestry short sleepers, 2,473 Hispanic short sleepers, at least 913 African American controls, 2,504 East Asian ancestry controls, up to 26,764 European ancestry controls, 9,854 Hispanic controls	8q24.13	AC091114.1	rs6982502-?	NR	4E-29		1.786	[1.46-2.11] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
1549	chr8	126479361	126479362	rs6982502	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Total cholesterol levels	128,305 Japanese ancestry individuals	NA	8q24.13	TRIB1, LINC00861	rs6982502-?	NR	2E-16		0.03211	[0.024-0.04] unit decrease novel	Illumina [6108953] (imputed)	N
1549	chr8	126479361	126479362	rs6982502	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum total protein level	113,509 Japanese ancestry individuals	NA	8q24.13	TRIB1, LINC00861	rs6982502-?	NR	8E-9		0.02423	[0.016-0.032] unit decrease novel	Illumina [6108953] (imputed)	N
1549	chr8	126479361	126479362	rs6982502	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	8q24.13	intergenic	rs6982502-T	0.5298	8E-23		0.0498	[0.04-0.06] unit decrease	Affymetrix [at least 7947838] (imputed)	N
1549	chr8	126479361	126479362	rs6982502	27599772	Ram R	2016-09-07	Clin Genet	A common variant association study in ethnic Saudi Arabs reveals novel susceptibility loci for hypertriglyceridemia.	Hypertriglyceridemia	927 Saudi Arabian ancestry cases, 3,159 Saudi Arabian ancestry controls	317 Saudi Arabian ancestry cases, 1,098 Saudi Arabian ancestry controls	8q24.13	TRIB1	rs6982502-C	NR	2E-8		1.35	[1.05-2]	Affymetrix [~ 8000000] (imputed)	N
1549	chr8	126479906	126479907	rs12674939	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	8q24.13	RP11-136O12.2	rs12674939-A	NR	1E-10		0.0218268	[0.015-0.028] unit increase	Affymetrix [319769] (imputed)	N
1549	chr8	126479906	126479907	rs12674939	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	8q24.13	RP11-136O12.2	rs12674939-A	NR	2E-10		0.0217994	[0.015-0.028] unit increase	Affymetrix [319769] (imputed)	N
1549	chr8	126479906	126479907	rs12674939	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	8q24.13	RP11-136O12.2	rs12674939-A	NR	7E-13		0.0246899	[0.018-0.031] unit increase	Affymetrix [321169] (imputed)	N
1549	chr8	126480366	126480367	rs4871603	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	8q24.13		rs4871603-C	0.345598	3E-13		0.0308511	[0.023-0.039] unit increase	NR [11722792] (imputed)	N
1549	chr8	126480366	126480367	rs4871603	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	8q24.13		rs4871603-C	0.345598	2E-34		0.049729	[0.042-0.058] unit decrease	NR [11722792] (imputed)	N
1549	chr8	126480366	126480367	rs4871603	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	8q24.13		rs4871603-C	0.345616	3E-28		0.0476547	[0.039-0.056] unit decrease	NR [11722792] (imputed)	N
1549	chr8	126480366	126480367	rs4871603	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	8q24.13		rs4871603-C	0.345598	2E-34		0.0500949	[0.042-0.058] unit decrease	NR [11722792] (imputed)	N
1549	chr8	126480366	126480367	rs4871603	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	8q24.13		rs4871603-C	0.345598	2E-30		0.0483817	[0.04-0.057] unit decrease	NR [11722792] (imputed)	N
1549	chr8	126480366	126480367	rs4871603	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	8q24.13		rs4871603-T	NR	3E-62		0.0357	[0.032-0.04] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
1549	chr8	126480366	126480367	rs4871603	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	8q24.13	TRIB1	rs4871603-C	0.346527	4E-73		0.0360442	[0.032-0.04] unit decrease	Affymetrix [NR] (imputed)	N
1549	chr8	126480366	126480367	rs4871603	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	8q24.13	TRIB1	rs4871603-C	0.346694	4E-15		0.0161806	[0.012-0.02] unit decrease	Affymetrix [NR] (imputed)	N
1549	chr8	126480512	126480550	rs138962052	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	8q24.13		rs138962052-T	NR	1E-8		0.0119	[0.0078-0.016] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
1549	chr8	126480512	126480550	rs138962052	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	8q24.13	RP11-136O12.2	rs138962052-T	0.469499	4E-10		0.013906417	[0.0096-0.0183] unit decrease	Affymetrix [93095623] (imputed)	N
1549	chr8	126480542	126480543	rs6988140	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Degree of unsaturation	115,006 European ancestry individuals	NA	8q24.13		rs6988140-C	0.457791	2E-9		0.0255946	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
1549	chr8	126481474	126481475	rs2980879	22479202	Dastani Z	2012-03-29	PLoS Genet	Novel loci for adiponectin levels and their influence on type 2 diabetes and metabolic traits: a multi-ethnic meta-analysis of 45,891 individuals.	Adiponectin levels	29,347 European ancestry individuals, 4,232 African American individuals, 1,776 Filipino ancestry individuals	NA	8q24.13	TRIB1	rs2980879-T	0.69	1E-9		0.03	[0.022-0.038] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1549	chr8	126481474	126481475	rs2980879	22479202	Dastani Z	2012-03-29	PLoS Genet	Novel loci for adiponectin levels and their influence on type 2 diabetes and metabolic traits: a multi-ethnic meta-analysis of 45,891 individuals.	Adiponectin levels	29,347 European ancestry individuals	10,536 European ancestry individuals	8q24.13	TRIB1	rs2980879-T	0.70	7E-9		0.03	[0.020-0.040] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1549	chr8	126481693	126481694	rs2980876	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	8q24.13	TRIB1	rs2980876-?	NR	2E-9	(Serum_TG)	0.06391114	NR unit increase	Illumina [609262]	N
1549	chr8	126481693	126481694	rs2980876	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	8q24.13	TRIB1	rs2980876-?	NR	2E-11	(Remnant_C)	0.07044175	NR unit increase	Illumina [609262]	N
1549	chr8	126481693	126481694	rs2980876	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	8q24.13	TRIB1	rs2980876-?	NR	2E-10	(XL_VLDL_L)	0.08684748	NR unit increase	Illumina [609262]	N
1549	chr8	126481693	126481694	rs2980876	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	8q24.13	TRIB1	rs2980876-?	NR	1E-11	(VLDL_C)	0.08447699	NR unit increase	Illumina [609262]	N
1549	chr8	126481693	126481694	rs2980876	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	8q24.13	TRIB1	rs2980876-?	NR	1E-10	(L_VLDL_L)	0.087312795	NR unit increase	Illumina [609262]	N
1549	chr8	126481693	126481694	rs2980876	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	8q24.13	TRIB1	rs2980876-?	NR	9E-10	(Serum_TG)	0.07679428	NR unit increase	Illumina [609262]	N
1549	chr8	126481693	126481694	rs2980876	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	8q24.13	TRIB1	rs2980876-?	NR	2E-9	(VLDL_C)	0.08843615	NR unit increase	Illumina [609262]	N
1549	chr8	126481693	126481694	rs2980876	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	8q24.13	TRIB1	rs2980876-?	NR	1E-9	(L_VLDL_L)	0.089002386	NR unit increase	Illumina [609262]	N
1549	chr8	126481693	126481694	rs2980876	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	8q24.13	TRIB1	rs2980876-?	NR	1E-8	(XL_VLDL_L)	0.08452683	NR unit increase	Illumina [609262]	N
1549	chr8	126481693	126481694	rs2980876	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	8q24.13	TRIB1	rs2980876-?	NR	1E-6	(Remnant_C)	0.07204029	NR unit increase	Illumina [609262]	N
1549	chr8	126481746	126481747	rs2980875	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	8q24.13	NR	rs2980875-?	NR	1E-11		0.02764683	[0.02-0.036] unit decrease	Illumina [31978265] (imputed)	N
1549	chr8	126481746	126481747	rs2980875	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	8q24.13	NR	rs2980875-?	NR	4E-7		1.793379	[1.1-2.48] unit decrease	Illumina [32003504] (imputed)	N
1549	chr8	126481746	126481747	rs2980875	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q24.13	NR	rs2980875-A	NR	9E-105		0.081	unit increase	Affymetrix [at least 7091467] (imputed)	N
1549	chr8	126481746	126481747	rs2980875	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q24.13	NR	rs2980875-A	0.597	8E-12	(Hispanic)	0.096	unit increase	Affymetrix [at least 7091467] (imputed)	N
1549	chr8	126481746	126481747	rs2980875	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q24.13	NR	rs2980875-A	0.54	5E-95	(EA)	0.085	unit increase	Affymetrix [at least 7091467] (imputed)	N
1549	chr8	126481746	126481747	rs2980875	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q24.13	NR	rs2980875-A	0.486	9E-6	(East Asian)	0.065	unit increase	Affymetrix [at least 7091467] (imputed)	N
1549	chr8	126481746	126481747	rs2980875	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q24.13	NR	rs2980875-A	NR	4E-63		0.07	unit increase	Affymetrix [at least 7091467] (imputed)	N
1549	chr8	126481746	126481747	rs2980875	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q24.13	NR	rs2980875-A	0.597	1E-6	(Hispanic)	0.075	unit increase	Affymetrix [at least 7091467] (imputed)	N
1549	chr8	126481746	126481747	rs2980875	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q24.13	NR	rs2980875-A	0.54	5E-54	(EA)	0.071	unit increase	Affymetrix [at least 7091467] (imputed)	N
1549	chr8	126481746	126481747	rs2980875	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q24.13	NR	rs2980875-A	0.486	9E-6	(East Asian)	0.071	unit increase	Affymetrix [at least 7091467] (imputed)	N
1549	chr8	126481746	126481747	rs2980875	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q24.13	NR	rs2980875-A	NR	1E-42		0.058	unit increase	Affymetrix [at least 7091467] (imputed)	N
1549	chr8	126481746	126481747	rs2980875	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q24.13	NR	rs2980875-A	0.54	2E-36	(EA)	0.059	unit increase	Affymetrix [at least 7091467] (imputed)	N
1549	chr8	126481746	126481747	rs2980875	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q24.13	NR	rs2980875-A	0.486	8E-6	(East Asian)	0.072	unit increase	Affymetrix [at least 7091467] (imputed)	N
1549	chr8	126481746	126481747	rs2980875	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q24.13	NR	rs2980875-A	NR	2E-24		0.035	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1549	chr8	126481746	126481747	rs2980875	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q24.13	NR	rs2980875-A	0.54	2E-23	(EA)	0.037	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1549	chr8	126482076	126482077	rs2954021	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	8q24.13		rs2954021-G	NR	3E-377		0.0833	[0.079-0.087] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
1549	chr8	126482076	126482077	rs2954021	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	111,667 East Asian ancestry individuals	NA	8q24.13		rs2954021-G	0.54765	2E-51		0.0602911	[0.052-0.068] unit decrease	Illumina [13471903] (imputed)	N
1549	chr8	126482076	126482077	rs2954021	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	8q24.13		rs2954021-G	NR	2E-127		0.0467	[0.043-0.05] unit decrease	Affymetrix, Illumina [20536134] (imputed)	N
1549	chr8	126482076	126482077	rs2954021	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	8q24.13		rs2954021-G	NR	3E-9		0.0124	[0.0083-0.0165] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
1549	chr8	126482076	126482077	rs2954021	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	8q24.13		rs2954021-G	NR	3E-34		0.0196	[0.016-0.023] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
1549	chr8	126482076	126482077	rs2954021	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	118,886 East Asian ancestry individuals	NA	8q24.13		rs2954021-G	0.547118	5E-20		0.0354834	[0.028-0.043] unit decrease	Illumina [13474352] (imputed)	N
1549	chr8	126482076	126482077	rs2954021	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	8q24.13		rs2954021-G	NR	3E-20		0.0195	[0.015-0.024] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
1549	chr8	126482076	126482077	rs2954021	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls, 33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	8q24.13		rs2954021-G	NR	4E-88		0.0953	[0.086-0.105] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1549	chr8	126482076	126482077	rs2954021	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	8q24.13		rs2954021-G	0.548303801	4E-23		0.09150036	[0.073-0.11] unit decrease	Illumina [13429980] (imputed)	N
1549	chr8	126482076	126482077	rs2954021	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	8q24.13		rs2954021-G	NR	2E-27		0.0215	[0.018-0.025] unit decrease	Affymetrix, Illumina [20536605] (imputed)	N
1549	chr8	126482076	126482077	rs2954021	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	8q24.13		rs2954021-G	NR	1E-23		0.0202	[0.016-0.024] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
1549	chr8	126482076	126482077	rs2954021	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	8q24.13		rs2954021-G	NR	3E-50		0.0279	[0.024-0.032] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
1549	chr8	126482076	126482077	rs2954021	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	133,471 East Asian ancestry individuals	NA	8q24.13		rs2954021-G	0.548283	6E-10		0.0215459	[0.015-0.028] unit decrease	Illumina [13476165] (imputed)	N
1549	chr8	126482076	126482077	rs2954021	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cholelithiasis	26,122 European ancestry cases, 461,431 European ancestry controls, 9,305 East Asian ancestry cases, 168,253 East Asian ancestry controls	NA	8q24.13		rs2954021-G	NR	3E-8		0.0453	[0.029-0.061] unit increase	Affymetrix, Illumina [25844936] (imputed)	N
1549	chr8	126482076	126482077	rs2954021	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	150,068 East Asian ancestry individuals	NA	8q24.13		rs2954021-G	0.548316	2E-8		0.0194079	[0.013-0.026] unit decrease	Illumina [13478956] (imputed)	N
1549	chr8	126482076	126482077	rs2954021	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	8q24.13		rs2954021-G	NR	2E-91		0.0378	[0.034-0.042] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
1549	chr8	126482076	126482077	rs2954021	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	150,545 East Asian ancestry individuals	NA	8q24.13		rs2954021-G	0.548586	4E-20		0.0311728	[0.025-0.038] unit decrease	Illumina [13478866] (imputed)	N
1549	chr8	126482076	126482077	rs2954021	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	8q24.13	TRIB1	rs2954021-A	0.4856	2E-10		0.007	[0.0046-0.0094] unit decrease	Affymetrix, Illumina [33811881] (imputed)	N
1549	chr8	126482076	126482077	rs2954021	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	8q24.13	TRIB1	rs2954021-A	0.495031	5E-98		0.00813488	[0.0074-0.0089] unit increase	Affymetrix [13995440] (imputed)	N
1549	chr8	126482076	126482077	rs2954021	33654266	Bonelli R	2021-03-02	Commun Biol	Identification of genetic factors influencing metabolic dysregulation and retinal support for MacTel, a retinal disorder.	Macular telangiectasia type 2	931 European ancestry cases, 3,745 European ancestry controls	NA	8q24.13	NR	rs2954021-G	0.519	2E-7			NR	Illumina [7289516] (imputed)	N
1549	chr8	126482076	126482077	rs2954021	33654266	Bonelli R	2021-03-02	Commun Biol	Identification of genetic factors influencing metabolic dysregulation and retinal support for MacTel, a retinal disorder.	Macular telangiectasia type 2	1,067 European or unknown ancestry cases, 3,799 European or unknown ancestry controls	NA	8q24.13	NR	rs2954021-G	0.519	3E-7		0.75	[0.67-0.84]	Illumina [7289516] (imputed)	N
1549	chr8	126482076	126482077	rs2954021	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	8q24.13	TRIB1, POU5F1B	rs2954021-A	0.49	2E-75		18.4	z-score increase	Affymetrix [4312306] (imputed)	N
1549	chr8	126482076	126482077	rs2954021	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	8q24.13	TRIB1	rs2954021-A	0.50042	3E-13		1.06	[1.04-1.07]	NR [8126035] (imputed)	N
1549	chr8	126482076	126482077	rs2954021	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 2,680 cases, 380,970 European ancestry controls, 73,242 controls	NA	8q24.13	TRIB1	rs2954021-A	0.493225	9E-9		1.06	[1.04-1.09]	NR [10903881] (imputed)	N
1549	chr8	126482076	126482077	rs2954021	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Triglyceride levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	8q24.13	TRIB1, LINC00861	rs2954021-?		1E-70		0.065	[0.058-0.072] unit decrease	Illumina [31500000] (imputed)	N
1549	chr8	126482076	126482077	rs2954021	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Total cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	8q24.13	TRIB1, LINC00861	rs2954021-?		2E-31		0.0402	[0.034-0.047] unit decrease	Illumina [31500000] (imputed)	N
1549	chr8	126482076	126482077	rs2954021	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Serum alkaline phosphatase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	8q24.13	TRIB1, LINC00861	rs2954021-?		4E-23		0.0395	[0.032-0.047] unit decrease	Illumina [31500000] (imputed)	N
1549	chr8	126482076	126482077	rs2954021	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Low density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	8q24.13	TRIB1, LINC00861	rs2954021-?		2E-20		0.0383	[0.03-0.046] unit decrease	Illumina [31500000] (imputed)	N
1549	chr8	126482076	126482077	rs2954021	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Gamma glutamyl transferase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	8q24.13	TRIB1, LINC00861	rs2954021-?		7E-11		0.0258	[0.018-0.034] unit decrease	Illumina [31500000] (imputed)	N
1549	chr8	126482076	126482077	rs2954021	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Alanine aminotransferase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	8q24.13	TRIB1, LINC00861	rs2954021-?		2E-19		0.0312	[0.024-0.038] unit decrease	Illumina [31500000] (imputed)	N
1549	chr8	126482076	126482077	rs2954021	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	8q24.13	RP11-136O12.2	rs2954021-G	0.505184	8E-11		0.023851521	[0.017-0.031] unit increase	Affymetrix [93095623] (imputed)	N
1549	chr8	126482076	126482077	rs2954021	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	8q24.13	RP11-136O12.2	rs2954021-G	0.5052	6E-34		0.027142383	[0.023-0.032] unit increase	Affymetrix [93095623] (imputed)	N
1549	chr8	126482076	126482077	rs2954021	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q24.13	NR	rs2954021-A	0.493662	4E-106				Affymetrix, Illumina [22063850] (imputed)	N
1549	chr8	126482076	126482077	rs2954021	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	8q24.13	NR	rs2954021-A	0.495648	1E-108		0.041564	[0.038-0.045] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
1549	chr8	126482076	126482077	rs2954021	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	8q24.13	NR	rs2954021-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
1549	chr8	126482076	126482077	rs2954021	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals	NA	8q24.13	TRIB1	rs2954021-A	0.4915	7E-14		0.0148457	[0.011-0.019] unit increase	Affymetrix, Illumina [8603712] (imputed)	N
1549	chr8	126482076	126482077	rs2954021	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	8q24.13	NR	rs2954021-?	NR	2E-17		0.03451724	[0.027-0.042] unit decrease	Illumina [31978265] (imputed)	N
1549	chr8	126482076	126482077	rs2954021	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	8q24.13	NR	rs2954021-?	NR	5E-8		1.900843	[1.22-2.59] unit decrease	Illumina [32003504] (imputed)	N
1549	chr8	126482076	126482077	rs2954021	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	8q24.13	NR	rs2954021-?	NR	2E-6		1.489255	[0.88-2.1] unit decrease	Illumina [31808917] (imputed)	N
1549	chr8	126482076	126482077	rs2954021	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls	NA	8q24.13	RP11-136O12.2	rs2954021-A	0.495627	8E-67		0.09663525	[0.086-0.108] unit increase	Affymetrix [7288503] (imputed)	N
1549	chr8	126482076	126482077	rs2954021	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	8q24.13	TRIB1, LINC00861	rs2954021-G	NR	4E-169				Affymetrix, Illumina [NR] (imputed)	N
1549	chr8	126482076	126482077	rs2954021	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	8q24.13	TRIB1, LINC00861	rs2954021-G	NR	3E-127	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1549	chr8	126482076	126482077	rs2954021	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	8q24.13	TRIB1, LINC00861	rs2954021-G	NR	2E-46	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
1549	chr8	126482076	126482077	rs2954021	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	8q24.13	TRIB1, LINC00861	rs2954021-G	NR	2E-12	(Hispanic)			Affymetrix, Illumina [NR] (imputed)	N
1549	chr8	126482076	126482077	rs2954021	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	8q24.13	TRIB1, LINC00861	rs2954021-G	NR	9E-179				Affymetrix, Illumina [NR] (imputed)	N
1549	chr8	126482076	126482077	rs2954021	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	8q24.13	TRIB1, LINC00861	rs2954021-G	NR	5E-47	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
1549	chr8	126482076	126482077	rs2954021	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	8q24.13	TRIB1, LINC00861	rs2954021-G	NR	2E-135	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1549	chr8	126482076	126482077	rs2954021	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	8q24.13	TRIB1, LINC00861	rs2954021-G	NR	1E-12	(Hispanic)			Affymetrix, Illumina [NR] (imputed)	N
1549	chr8	126482076	126482077	rs2954021	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	8q24.13	TRIB1, LINC00861	rs2954021-G	NR	7E-32	(Asian)	0.03	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1549	chr8	126482076	126482077	rs2954021	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	8q24.13	TRIB1, LINC00861	rs2954021-G	NR	6E-93		0.034	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1549	chr8	126482076	126482077	rs2954021	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	8q24.13	TRIB1, LINC00861	rs2954021-G	NR	3E-9	(Hispanic)	0.038	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1549	chr8	126482076	126482077	rs2954021	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	8q24.13	TRIB1, LINC00861	rs2954021-G	NR	1E-64	(EA)	0.043	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1549	chr8	126482076	126482077	rs2954021	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	8q24.13	TRIB1, LINC00861	rs2954021-G	NR	8E-8	(Hispanic)	0.042	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1549	chr8	126482076	126482077	rs2954021	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	8q24.13	TRIB1, LINC00861	rs2954021-G	NR	8E-29	(Asian)	0.029	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1549	chr8	126482076	126482077	rs2954021	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	8q24.13	TRIB1, LINC00861	rs2954021-G	NR	3E-63		0.033	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1549	chr8	126482076	126482077	rs2954021	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	8q24.13	TRIB1, LINC00861	rs2954021-G	NR	3E-38	(EA)	0.044	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1549	chr8	126482076	126482077	rs2954021	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	8q24.13	TRIB1, LINC00861	rs2954021-G	NR	6E-10	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
1549	chr8	126482076	126482077	rs2954021	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	8q24.13	TRIB1, LINC00861	rs2954021-G	NR	3E-78	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1549	chr8	126482076	126482077	rs2954021	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	8q24.13	TRIB1, LINC00861	rs2954021-G	NR	1E-85				Affymetrix, Illumina [NR] (imputed)	N
1549	chr8	126482076	126482077	rs2954021	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	8q24.13	TRIB1, LINC00861	rs2954021-G	NR	1E-6	(Hispanic)			Affymetrix, Illumina [NR] (imputed)	N
1549	chr8	126482076	126482077	rs2954021	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	8q24.13	TRIB1, LINC00861	rs2954021-G	NR	5E-7	(Hispanic)			Affymetrix, Illumina [NR] (imputed)	N
1549	chr8	126482076	126482077	rs2954021	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	8q24.13	TRIB1, LINC00861	rs2954021-G	NR	5E-15	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
1549	chr8	126482076	126482077	rs2954021	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	8q24.13	TRIB1, LINC00861	rs2954021-G	NR	1E-98				Affymetrix, Illumina [NR] (imputed)	N
1549	chr8	126482076	126482077	rs2954021	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	8q24.13	TRIB1, LINC00861	rs2954021-G	NR	1E-85	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1549	chr8	126482076	126482077	rs2954021	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	8q24.13	TRIB1, LINC00861	rs2954021-G	NR	8E-7	(Asian)	1.478	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1549	chr8	126482076	126482077	rs2954021	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	8q24.13	TRIB1, LINC00861	rs2954021-G	NR	1E-35		1.728	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1549	chr8	126482076	126482077	rs2954021	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	8q24.13	TRIB1, LINC00861	rs2954021-G	NR	1E-31	(EA)	2.025	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1549	chr8	126482076	126482077	rs2954021	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	8q24.13	TRIB1, LINC00861	rs2954021-G	NR	7E-27		1.824	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1549	chr8	126482076	126482077	rs2954021	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	8q24.13	TRIB1, LINC00861	rs2954021-G	NR	7E-19	(EA)	2.079	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1549	chr8	126482076	126482077	rs2954021	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	8q24.13	TRIB1, LINC00861	rs2954021-G	NR	1E-10	(Asian)	1.903	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1549	chr8	126482076	126482077	rs2954021	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	8q24.13	TRIB1, LINC00861	rs2954021-G	NR	5E-39				Affymetrix, Illumina [NR] (imputed)	N
1549	chr8	126482076	126482077	rs2954021	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	8q24.13	TRIB1, LINC00861	rs2954021-G	NR	1E-45	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1549	chr8	126482076	126482077	rs2954021	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	8q24.13	TRIB1, LINC00861	rs2954021-G	NR	5E-39				Affymetrix, Illumina [NR] (imputed)	N
1549	chr8	126482076	126482077	rs2954021	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	8q24.13	TRIB1, LINC00861	rs2954021-G	NR	3E-45	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1549	chr8	126482076	126482077	rs2954021	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	8q24.13	TRIB1, LINC00861	rs2954021-G	NR	5E-20	(EA)	0.01	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1549	chr8	126482076	126482077	rs2954021	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	8q24.13	TRIB1, LINC00861	rs2954021-G	NR	2E-16		0.006	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1549	chr8	126482076	126482077	rs2954021	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	8q24.13	TRIB1, LINC00861	rs2954021-G	NR	4E-9	(EA)	0.009046	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1549	chr8	126482076	126482077	rs2954021	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	8q24.13	TRIB1, LINC00861	rs2954021-G	NR	1E-8		0.005807	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1549	chr8	126482076	126482077	rs2954021	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	8q24.13		rs2954021-?	NR	4E-11				NR [~ 8900000] (imputed)	N
1549	chr8	126482076	126482077	rs2954021	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	8q24.13		rs2954021-?	NR	8E-10				NR [~ 8900000] (imputed)	N
1549	chr8	126482076	126482077	rs2954021	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	8q24.13	NA	rs2954021-A	0.5089	2E-10		0.0107	[0.0074-0.014] unit decrease	NR [~ 27400000] (imputed)	N
1549	chr8	126482076	126482077	rs2954021	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q24.13	NR	rs2954021-A	NR	1E-112		0.084	unit increase	Affymetrix [at least 7091467] (imputed)	N
1549	chr8	126482076	126482077	rs2954021	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q24.13	NR	rs2954021-A	0.529	2E-11	(Hispanic)	0.092	unit increase	Affymetrix [at least 7091467] (imputed)	N
1549	chr8	126482076	126482077	rs2954021	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q24.13	NR	rs2954021-A	0.499	7E-100	(EA)	0.087	unit increase	Affymetrix [at least 7091467] (imputed)	N
1549	chr8	126482076	126482077	rs2954021	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q24.13	NR	rs2954021-A	0.467	2E-6	(East Asian)	0.07	unit increase	Affymetrix [at least 7091467] (imputed)	N
1549	chr8	126482076	126482077	rs2954021	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q24.13	NR	rs2954021-A	NR	6E-69		0.073	unit increase	Affymetrix [at least 7091467] (imputed)	N
1549	chr8	126482076	126482077	rs2954021	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q24.13	NR	rs2954021-A	0.529	1E-7	(Hispanic)	0.079	unit increase	Affymetrix [at least 7091467] (imputed)	N
1549	chr8	126482076	126482077	rs2954021	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q24.13	NR	rs2954021-A	0.499	2E-58	(EA)	0.074	unit increase	Affymetrix [at least 7091467] (imputed)	N
1549	chr8	126482076	126482077	rs2954021	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q24.13	NR	rs2954021-A	0.467	2E-6	(East Asian)	0.077	unit increase	Affymetrix [at least 7091467] (imputed)	N
1549	chr8	126482076	126482077	rs2954021	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q24.13	NR	rs2954021-A	NR	2E-46		0.061	unit increase	Affymetrix [at least 7091467] (imputed)	N
1549	chr8	126482076	126482077	rs2954021	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q24.13	NR	rs2954021-A	0.499	1E-39	(EA)	0.062	unit increase	Affymetrix [at least 7091467] (imputed)	N
1549	chr8	126482076	126482077	rs2954021	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q24.13	NR	rs2954021-A	0.467	3E-6	(East Asian)	0.076	unit increase	Affymetrix [at least 7091467] (imputed)	N
1549	chr8	126482076	126482077	rs2954021	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q24.13	NR	rs2954021-A	NR	4E-25		0.035	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1549	chr8	126482076	126482077	rs2954021	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q24.13	NR	rs2954021-A	0.499	5E-24	(EA)	0.038	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1549	chr8	126482076	126482077	rs2954021	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Triglyceride levels	105,597 Japanese ancestry individuals	NA	8q24.13	TRIB1, LINC00861	rs2954021-?	NR	7E-42		0.05782	[0.049-0.066] unit decrease novel	Illumina [6108953] (imputed)	N
1549	chr8	126482076	126482077	rs2954021	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum alkaline phosphatase levels	105,030 Japanese ancestry individuals	NA	8q24.13	TRIB1, LINC00861	rs2954021-?	NR	7E-16		0.03517	[0.027-0.044] unit decrease novel	Illumina [6108953] (imputed)	N
1549	chr8	126482076	126482077	rs2954021	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Gamma glutamyl transferase levels	118,309 Japanese ancestry individuals	NA	8q24.13	TRIB1, LINC00861	rs2954021-?	NR	5E-9		0.02379	[0.016-0.032] unit decrease novel	Illumina [6108953] (imputed)	N
1549	chr8	126482076	126482077	rs2954021	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	8q24.13	NR	rs2954021-G	NR	1E-27		0.0422174	[0.034-0.05] unit increase	Affymetrix [16832071] (imputed)	N
1549	chr8	126482076	126482077	rs2954021	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Triglyceride levels	18,421 East Asian ancestry individuals	38,060 East Asian ancestry individuals	8q24.13	TRIB1	rs2954021-A	0.43	1E-8	(BMI unadjusted)	0.06	[0.04-0.08] unit increase	Affymetrix, Illumina [~ 2400000] (imputed)	N
1549	chr8	126482076	126482077	rs2954021	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	8q24.13	RP11-136O12.2	rs2954021-G	0.5053	2E-12		0.02513768	[0.018-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
1549	chr8	126482076	126482077	rs2954021	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	8q24.13	RP11-136O12.2	rs2954021-G	0.5053	9E-15		0.02756497	[0.021-0.035] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1549	chr8	126482076	126482077	rs2954021	22001757	Chambers JC	2011-10-16	Nat Genet	Genome-wide association study identifies loci influencing concentrations of liver enzymes in plasma.	Liver enzyme levels (alkaline phosphatase)	Up to 52,350 European ancestry individuals, up to 8,739 Indian Asian ancestry individuals	NA	8q24.13	TRIB1	rs2954021-A	0.50	2E-13		1.4	[0.50-2.30] % increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1549	chr8	126482076	126482077	rs2954021	22001757	Chambers JC	2011-10-16	Nat Genet	Genome-wide association study identifies loci influencing concentrations of liver enzymes in plasma.	Liver enzyme levels (alanine transaminase)	Up to 52,350 European ancestry individuals, up to 8,739 Indian Asian ancestry individuals	NA	8q24.13	TRIB1	rs2954021-A	0.50	5E-9		1.6	[0.60-2.60] % increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1549	chr8	126482076	126482077	rs2954021	20864672	Waterworth DM	2010-09-23	Arterioscler Thromb Vasc Biol	Genetic variants influencing circulating lipid levels and risk of coronary artery disease.	LDL cholesterol	up to 17,723 European ancestry individuals	up to 37,774 European ancestry individuals, up to 9,665 Indian Asian ancestry individuals	8q24.13	TRIB1	rs2954021-G	0.50	1E-7		0.02	[0.01-0.03] unit decrease	Affymetrix, Illumina, Perlegen [2155369] (imputed)	N
1549	chr8	126482620	126482621	rs2954022	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	8q24.13	TRIB1	rs2954022-C	0.534868	4E-65		0.00893439	[0.0079-0.0099] unit increase	Affymetrix [13995440] (imputed)	N
1549	chr8	126482620	126482621	rs2954022	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	8q24.13	TRIB1	rs2954022-?	NR	8E-11	(S_VLDL_PL)	0.07479757	NR unit decrease	Illumina [609262]	N
1549	chr8	126482620	126482621	rs2954022	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	8q24.13	TRIB1	rs2954022-?	NR	7E-9	(MUFA)	0.06120217	NR unit decrease	Illumina [609262]	N
1549	chr8	126482620	126482621	rs2954022	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	8q24.13	TRIB1	rs2954022-?	NR	6E-10	(S_VLDL_P)	0.0764567	NR unit decrease	Illumina [609262]	N
1549	chr8	126482620	126482621	rs2954022	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	8q24.13	TRIB1	rs2954022-?	NR	2E-11	(XS_VLDL_TG)	0.075068936	NR unit decrease	Illumina [609262]	N
1549	chr8	126482620	126482621	rs2954022	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	8q24.13	TRIB1	rs2954022-?	NR	1E-10	(S_VLDL_TG)	0.0770728	NR unit decrease	Illumina [609262]	N
1549	chr8	126482620	126482621	rs2954022	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	8q24.13	TRIB1	rs2954022-?	NR	9E-10	(S_VLDL_P)	0.07662295	NR unit decrease	Illumina [609262]	N
1549	chr8	126482620	126482621	rs2954022	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	8q24.13	TRIB1	rs2954022-?	NR	4E-9	(S_VLDL_TG)	0.07365418	NR unit decrease	Illumina [609262]	N
1549	chr8	126482620	126482621	rs2954022	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	8q24.13	TRIB1	rs2954022-?	NR	4E-10	(XS_VLDL_TG)	0.078743234	NR unit decrease	Illumina [609262]	N
1549	chr8	126482620	126482621	rs2954022	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	8q24.13	TRIB1	rs2954022-?	NR	1E-9	(S_VLDL_PL)	0.07644915	NR unit decrease	Illumina [609262]	N
1549	chr8	126482620	126482621	rs2954022	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	8q24.13	TRIB1	rs2954022-?	NR	1E-9	(MUFA)	0.07601303	NR unit decrease	Illumina [609262]	N
1549	chr8	126482620	126482621	rs2954022	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	8q24.13	NR	rs2954022-?	NR	3E-11		0.02721618	[0.019-0.035] unit decrease	Illumina [31978265] (imputed)	N
1549	chr8	126482620	126482621	rs2954022	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	8q24.13	NR	rs2954022-?	NR	4E-7		1.797756	[1.11-2.49] unit decrease	Illumina [32003504] (imputed)	N
1549	chr8	126482620	126482621	rs2954022	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	Triglyceride levels	up to 23,508 African ancestry individuals, 4,649 Asian ancestry individuals, up to 77,047 European ancestry individuals, 6,705 Hispanic individuals	NA	8q24.13		rs2954022-A	0.4686	2E-30	(EA)	0.0298	[0.025-0.035] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1549	chr8	126482620	126482621	rs2954022	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	LDL cholesterol levels	up to 23,353 African ancestry individuals, 13,171 Asian ancestry individuals, up to 82,522 European ancestry individuals, 6,646 Hispanic individuals	NA	8q24.13		rs2954022-A	0.4669	9E-17	(EA)	1.4631	[1.12-1.81] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1549	chr8	126482620	126482621	rs2954022	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	HDL cholesterol levels	up to 23,761 African ancestry individuals, 13,171 Asian ancestry individuals, up to 90,272 European ancestry individuals, 6,620 Hispanic individuals	NA	8q24.13		rs2954022-A	0.4682	3E-14	(EA)	0.0094	[0.007-0.0118] unit increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1549	chr8	126482620	126482621	rs2954022	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q24.13	NR	rs2954022-C	NR	1E-103		0.081	unit increase	Affymetrix [at least 7091467] (imputed)	N
1549	chr8	126482620	126482621	rs2954022	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q24.13	NR	rs2954022-C	0.598	2E-11	(Hispanic)	0.094	unit increase	Affymetrix [at least 7091467] (imputed)	N
1549	chr8	126482620	126482621	rs2954022	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q24.13	NR	rs2954022-C	0.54	6E-94	(EA)	0.085	unit increase	Affymetrix [at least 7091467] (imputed)	N
1549	chr8	126482620	126482621	rs2954022	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q24.13	NR	rs2954022-C	0.486	8E-6	(East Asian)	0.065	unit increase	Affymetrix [at least 7091467] (imputed)	N
1549	chr8	126482620	126482621	rs2954022	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q24.13	NR	rs2954022-C	NR	1E-62		0.07	unit increase	Affymetrix [at least 7091467] (imputed)	N
1549	chr8	126482620	126482621	rs2954022	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q24.13	NR	rs2954022-C	0.598	1E-6	(Hispanic)	0.075	unit increase	Affymetrix [at least 7091467] (imputed)	N
1549	chr8	126482620	126482621	rs2954022	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q24.13	NR	rs2954022-C	0.54	3E-53	(EA)	0.071	unit increase	Affymetrix [at least 7091467] (imputed)	N
1549	chr8	126482620	126482621	rs2954022	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q24.13	NR	rs2954022-C	0.486	8E-6	(East Asian)	0.071	unit increase	Affymetrix [at least 7091467] (imputed)	N
1549	chr8	126482620	126482621	rs2954022	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q24.13	NR	rs2954022-C	NR	2E-42		0.058	unit increase	Affymetrix [at least 7091467] (imputed)	N
1549	chr8	126482620	126482621	rs2954022	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q24.13	NR	rs2954022-C	0.54	6E-36	(EA)	0.059	unit increase	Affymetrix [at least 7091467] (imputed)	N
1549	chr8	126482620	126482621	rs2954022	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q24.13	NR	rs2954022-C	0.486	7E-6	(East Asian)	0.072	unit increase	Affymetrix [at least 7091467] (imputed)	N
1549	chr8	126482620	126482621	rs2954022	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q24.13	NR	rs2954022-C	NR	3E-24		0.035	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1549	chr8	126482620	126482621	rs2954022	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q24.13	NR	rs2954022-C	0.54	2E-23	(EA)	0.037	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1549	chr8	126482620	126482621	rs2954022	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Triglyceride levels	28,183 East Asian ancestry individuals, 177,861 European ancestry individuals	10,857 Chinese ancestry individuals	8q24.13	TRIB1	rs2954022-A	0.47	7E-121	(Trans-ethnic initial)	0.078	[0.072-0.084] unit decrease (EA Beta values)	Affymetrix, Illumina [up to 1900000] (imputed)	N
1549	chr8	126482620	126482621	rs2954022	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	HDL cholesterol	up to 62,166 European ancestry individuals	NA	8q24.13	TRIB1	rs2954022-A	0.48	1E-9		0.036	[0.024-0.048] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
1549	chr8	126484275	126484276	rs4336630	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	8q24.13		rs4336630-T	0.345944	2E-17		0.0357149	[0.027-0.044] unit increase	NR [11722792] (imputed)	N
1549	chr8	126484275	126484276	rs4336630	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	8q24.13		rs4336630-T	0.345862	4E-20		0.0384332	[0.03-0.047] unit increase	NR [11722792] (imputed)	N
1549	chr8	126484275	126484276	rs4336630	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	8q24.13		rs4336630-T	0.345862	1E-19		0.0370709	[0.029-0.045] unit increase	NR [11722792] (imputed)	N
1549	chr8	126484275	126484276	rs4336630	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	8q24.13		rs4336630-T	0.345862	5E-31		0.0478328	[0.04-0.056] unit decrease	NR [11722792] (imputed)	N
1549	chr8	126484275	126484276	rs4336630	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	8q24.13		rs4336630-T	0.345862	1E-31		0.0482528	[0.04-0.056] unit decrease	NR [11722792] (imputed)	N
1549	chr8	126484275	126484276	rs4336630	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	8q24.13		rs4336630-T	0.345862	1E-13		0.0306006	[0.023-0.039] unit decrease	NR [11722792] (imputed)	N
1549	chr8	126484275	126484276	rs4336630	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	8q24.13		rs4336630-T	0.345944	1E-31		0.0485809	[0.04-0.057] unit decrease	NR [11722792] (imputed)	N
1549	chr8	126484275	126484276	rs4336630	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	8q24.13		rs4336630-T	0.345862	9E-29		0.0451944	[0.037-0.053] unit decrease	NR [11722792] (imputed)	N
1549	chr8	126484275	126484276	rs4336630	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	8q24.13		rs4336630-T	0.345856	8E-13		0.0297552	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
1549	chr8	126484275	126484276	rs4336630	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	8q24.13		rs4336630-T	0.345944	4E-29		0.0465096	[0.038-0.055] unit decrease	NR [11722792] (imputed)	N
1549	chr8	126484275	126484276	rs4336630	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	8q24.13		rs4336630-T	0.345862	2E-15		0.0334288	[0.025-0.042] unit decrease	NR [11722792] (imputed)	N
1549	chr8	126484275	126484276	rs4336630	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	8q24.13		rs4336630-T	0.345862	1E-24		0.041756	[0.034-0.05] unit decrease	NR [11722792] (imputed)	N
1549	chr8	126484275	126484276	rs4336630	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	8q24.13		rs4336630-T	0.345978	3E-10		0.0273506	[0.019-0.036] unit decrease	NR [11722792] (imputed)	N
1549	chr8	126484462	126484463	rs2954025	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for LDL particles	115,082 European ancestry individuals	NA	8q24.13		rs2954025-C	0.351249	1E-15		0.0336997	[0.025-0.042] unit decrease	NR [11722792] (imputed)	N
1550	chr8	126484525	126484526	rs2954026	32469254	Matsunaga H	2020-05-29	Circ Genom Precis Med	Transethnic Meta-analysis of Genome-wide Association Studies Identifies Three New Loci and Characterizes Population-specific Differences for Coronary Artery Disease.	Coronary artery disease	15,302 Japanese ancestry cases, 76,014 European and East Asian ancestry cases, 36,140 Japanese ancestry controls, 264,785 European and East Asian ancestry controls	NA	8q24.13	TRIB1, FAM84B	rs2954026-T	0.32	5E-10		1.05	[1.04-1.07]	Illumina [5167567] (imputed)	N
1550	chr8	126484525	126484526	rs2954026	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x long total sleep time interaction (2df test)	2,933 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, up to 7,870 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,975 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 32,171 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 616 East Asian ancestry long sleepers, up to 9,486 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 929 African American controls, 2,517 East Asian ancestry controls, up to 38,126 European ancestry controls, 10,063 Hispanic controls	8q24.13	AC091114.1	rs2954026-?	NR	1E-25		0.009991	[0.008-0.012] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
1550	chr8	126484525	126484526	rs2954026	21386085	Kraja AT	2011-03-08	Diabetes	A bivariate genome-wide approach to metabolic syndrome: STAMPEED consortium.	HDL Cholesterol - Triglycerides (HDLC-TG)	22,161 European ancestry individuals	NA	8q24.13	TRIB1	rs2954026-G	NR	8E-9		0.16	[0.10-0.22] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1550	chr8	126485293	126485294	rs2954027	33763119	Read RW	2021-03-02	Front Genet	Genome-Wide Identification of Rare and Common Variants Driving Triglyceride Levels in a Nevada Population.	Triglyceride levels	9,183 European ancestry individuals	35,321 European ancestry individuals	8q24.13		rs2954027-A	NR	2E-38		7.9022155	mg/dl decrease	NR [5712318]	N
1550	chr8	126485293	126485294	rs2954027	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	8q24.13	TRIB1, POU5F1B	rs2954027-T	0.53	3E-23		9.93	z-score increase	Affymetrix [4314223] (imputed)	N
1550	chr8	126485293	126485294	rs2954027	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	8q24.13	RP11-136O12.2	rs2954027-A	0.468278	7E-28		0.024421792	[0.02-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1550	chr8	126485293	126485294	rs2954027	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	8q24.13	RP11-136O12.2	rs2954027-A	0.468286	3E-39		0.029025769	[0.025-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
1550	chr8	126485293	126485294	rs2954027	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	8q24.13	NR	rs2954027-A	0.467243	1E-30		0.022155	[0.018-0.026] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
1550	chr8	126485293	126485294	rs2954027	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	8q24.13	RP11-136O12.2	rs2954027-A	0.4663	2E-37		0.04543718	[0.038-0.052] unit increase	Affymetrix [~ 2500000] (imputed)	N
1550	chr8	126485336	126485337	rs2980860	33109212	Chang H	2020-10-28	BMC Med	Genetic architecture of cardiometabolic risks in people living with HIV.	Triglyceride levels in HIV infection	3,095 European ancestry individuals, 3,189 African American individuals	NA	8q24.13	TRIB1, LINC00861	rs2980860-?		6E-12	(EA)	0.16575564	[0.12-0.21] unit decrease	Illumina [13620258] (imputed)	N
1550	chr8	126485530	126485531	rs7846466	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	8q24.13	TRIB1	rs7846466-?	NR	9E-10	(L_VLDL_CE)	0.08498354	NR unit increase	Illumina [609262]	N
1550	chr8	126485530	126485531	rs7846466	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	8q24.13	TRIB1	rs7846466-?	NR	6E-10	(XXL_VLDL_FC)	0.088291086	NR unit increase	Illumina [609262]	N
1550	chr8	126485530	126485531	rs7846466	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	8q24.13	TRIB1	rs7846466-?	NR	5E-10	(XXL_VLDL_C)	0.08967419	NR unit increase	Illumina [609262]	N
1550	chr8	126485530	126485531	rs7846466	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	8q24.13	TRIB1	rs7846466-?	NR	5E-10	(XL_VLDL_C)	0.090785265	NR unit increase	Illumina [609262]	N
1550	chr8	126485530	126485531	rs7846466	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	8q24.13	TRIB1	rs7846466-?	NR	4E-10	(L_VLDL_C)	0.08848703	NR unit increase	Illumina [609262]	N
1550	chr8	126485530	126485531	rs7846466	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	8q24.13	TRIB1	rs7846466-?	NR	3E-9	(L_VLDL_FC)	0.0790637	NR unit increase	Illumina [609262]	N
1550	chr8	126485530	126485531	rs7846466	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	8q24.13	TRIB1	rs7846466-?	NR	3E-10	(XL_VLDL_CE)	0.09071913	NR unit increase	Illumina [609262]	N
1550	chr8	126485530	126485531	rs7846466	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	8q24.13	TRIB1	rs7846466-?	NR	1E-9	(M_VLDL_FC)	0.0860688	NR unit increase	Illumina [609262]	N
1550	chr8	126485530	126485531	rs7846466	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	8q24.13	TRIB1	rs7846466-?	NR	1E-10	(XXL_VLDL_CE)	0.08915523	NR unit increase	Illumina [609262]	N
1550	chr8	126485530	126485531	rs7846466	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	8q24.13	TRIB1	rs7846466-?	NR	6E-10	(XXL_VLDL_C)	0.0917024	NR unit increase	Illumina [609262]	N
1550	chr8	126485530	126485531	rs7846466	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	8q24.13	TRIB1	rs7846466-?	NR	6E-10	(XL_VLDL_C)	0.091542795	NR unit increase	Illumina [609262]	N
1550	chr8	126485530	126485531	rs7846466	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	8q24.13	TRIB1	rs7846466-?	NR	4E-10	(XL_VLDL_CE)	0.09252326	NR unit increase	Illumina [609262]	N
1550	chr8	126485530	126485531	rs7846466	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	8q24.13	TRIB1	rs7846466-?	NR	2E-9	(XXL_VLDL_FC)	0.088826224	NR unit increase	Illumina [609262]	N
1550	chr8	126485530	126485531	rs7846466	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	8q24.13	TRIB1	rs7846466-?	NR	2E-9	(XXL_VLDL_CE)	0.089142084	NR unit increase	Illumina [609262]	N
1550	chr8	126485530	126485531	rs7846466	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	8q24.13	TRIB1	rs7846466-?	NR	2E-9	(M_VLDL_FC)	0.088040896	NR unit increase	Illumina [609262]	N
1550	chr8	126485530	126485531	rs7846466	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	8q24.13	TRIB1	rs7846466-?	NR	2E-10	(L_VLDL_CE)	0.0930207	NR unit increase	Illumina [609262]	N
1550	chr8	126485530	126485531	rs7846466	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	8q24.13	TRIB1	rs7846466-?	NR	1E-10	(L_VLDL_FC)	0.09417088	NR unit increase	Illumina [609262]	N
1550	chr8	126485530	126485531	rs7846466	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	8q24.13	TRIB1	rs7846466-?	NR	1E-10	(L_VLDL_C)	0.09486143	NR unit increase	Illumina [609262]	N
1550	chr8	126486230	126486230	rs33924196	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Tyrosine levels	114,913 European ancestry individuals	NA	8q24.13		rs33924196-G	0.353506	1E-19		0.0402863	[0.032-0.049] unit increase	NR [11722792] (imputed)	N
1550	chr8	126486408	126486409	rs17321515	34535985	Fairfield CJ	2021-09-17	Hepatol Commun	Genome-Wide Association Study of NAFLD Using Electronic Health Records.	Nonalcoholic fatty liver disease	4,761 European ancestry cases, 373,227 European ancestry controls	2,656 European ancestry cases, 32,602 European ancestry controls	8q24.13		rs17321515-G	0.476	1E-16		0.86	[0.82-0.89]	Affymetrix [9723654] (imputed)	N
1550	chr8	126486408	126486409	rs17321515	31902109	Li D	2020-01-04	Genes Genomics	Progressive effects of single-nucleotide polymorphisms on 16 phenotypic traits based on longitudinal data.	Cholesterol	6,840 Korean ancestry individuals	NA	8q24.13	TRIB1, LINC00861	rs17321515-T	0.4425	4E-9	(total cholesterol)	2.782	NR unit increase	Affymetrix [305158]	N
1550	chr8	126486408	126486409	rs17321515	31566214	Kulminski AM	2019-09-30	J Gerontol A Biol Sci Med Sci	Quantitative and qualitative role of antagonistic heterogeneity in genetics of blood lipids.	Triglyceride levels	29,902 European ancestry individuals	NA	8q24.13		rs17321515-G	0.47	4E-20		6.12	[4.81-7.43] unit decrease	Affymetrix, Illumina [up to 2500000] (imputed)	N
1550	chr8	126486408	126486409	rs17321515	31566214	Kulminski AM	2019-09-30	J Gerontol A Biol Sci Med Sci	Quantitative and qualitative role of antagonistic heterogeneity in genetics of blood lipids.	Total cholesterol levels	29,902 European ancestry individuals	NA	8q24.13		rs17321515-G	0.47	1E-15		2.44	[1.85-3.03] unit decrease	Affymetrix, Illumina [up to 2500000] (imputed)	N
1550	chr8	126486408	126486409	rs17321515	31566214	Kulminski AM	2019-09-30	J Gerontol A Biol Sci Med Sci	Quantitative and qualitative role of antagonistic heterogeneity in genetics of blood lipids.	Low density lipoprotein cholesterol levels	29,902 European ancestry individuals		8q24.13		rs17321515-G	0.47	5E-12		1.95	[1.40-2.50] unit decrease	Affymetrix, Illumina [up to 2500000] (imputed)	N
1550	chr8	126486408	126486409	rs17321515	31566214	Kulminski AM	2019-09-30	J Gerontol A Biol Sci Med Sci	Quantitative and qualitative role of antagonistic heterogeneity in genetics of blood lipids.	High density lipoprotein cholesterol levels	29,902 European ancestry individuals	NA	8q24.13		rs17321515-G	0.47	3E-6		0.56	[0.32-0.80] unit increase	Affymetrix, Illumina [up to 2500000] (imputed)	N
1550	chr8	126486408	126486409	rs17321515	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	8q24.13	NR	rs17321515-?	NR	4E-16		0.03278295	[0.025-0.041] unit decrease	Illumina [31978265] (imputed)	N
1550	chr8	126486408	126486409	rs17321515	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	8q24.13	NR	rs17321515-?	NR	1E-8		1.986789	[1.31-2.67] unit decrease	Illumina [32003504] (imputed)	N
1550	chr8	126486408	126486409	rs17321515	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	8q24.13	NR	rs17321515-?	NR	4E-7		1.57894	[0.97-2.19] unit decrease	Illumina [31808917] (imputed)	N
1550	chr8	126486408	126486409	rs17321515	24386095	Zhou L	2013-12-30	PLoS One	A genome wide association study identifies common variants associated with lipid levels in the Chinese population.	Lipid traits	3,451 Han Chinese ancestry individuals	8,830 Han Chinese ancestry individuals	8q24.13	TRIB1	rs17321515-A	0.47	8E-7	(LDL)	0.07	mmol/L increase	Affymetrix, Illumina [up to 2249917] (imputed)	N
1550	chr8	126486408	126486409	rs17321515	18193044	Kathiresan S	2008-01-13	Nat Genet	Six new loci associated with blood low-density lipoprotein cholesterol, high-density lipoprotein cholesterol or triglycerides in humans.	Triglycerides	2,758 European ancestry individuals	18,554 European ancestry individuals	8q24.13	TRIB1	rs17321515-G	0.49	4E-17		0.08	[0.06-0.10] unit decrease	Affymetrix [389878]	N
1550	chr8	126486408	126486409	rs17321515	18193043	Willer CJ	2008-01-13	Nat Genet	Newly identified loci that influence lipid concentrations and risk of coronary artery disease.	Triglycerides	8,684 European ancestry individuals	9,741 European ancestry individuals	8q24.13	TRIB1	rs17321515-A	0.56	7E-13		6.42	[NR] mg/dl increase	Affymetrix, Illumina [~ 2261000] (imputed)	N
1550	chr8	126487690	126487691	rs2980867	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	8q24.13		rs2980867-T	0.299252	5E-20		0.040957	[0.032-0.05] unit decrease	NR [11722792] (imputed)	N
1550	chr8	126487690	126487691	rs2980867	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	8q24.13		rs2980867-T	0.299252	2E-11		0.0301776	[0.021-0.039] unit decrease	NR [11722792] (imputed)	N
1550	chr8	126488249	126488250	rs2980869	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q24.13	NR	rs2980869-T	0.474144	2E-29				Affymetrix, Illumina [23114412] (imputed)	N
1550	chr8	126488249	126488250	rs2980869	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Total cholesterol levels	32,576 East Asian ancestry individuals, 187,365 European ancestry individuals	10,855 Chinese ancestry individuals	8q24.13	TRIB1	rs2980869-T	0.56	6E-17	(Asian initial, BMI unadjusted)	0.07	[0.054-0.086] unit decrease	Affymetrix, Illumina [up to 1900000] (imputed)	N
1550	chr8	126488249	126488250	rs2980869	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Total cholesterol levels	22,814 East Asian ancestry individuals	57,490 East Asian ancestry individuals	8q24.13	TRIB1	rs2980869-T	0.56	8E-13	(BMI unadjusted)	0.07	[0.05-0.09] unit decrease	Affymetrix, Illumina [~ 2400000] (imputed)	N
1550	chr8	126488249	126488250	rs2980869	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	LDL cholesterol levels	32,285 East Asian ancestry individuals, 173,082 European ancestry individuals	8,478 Chinese ancestry individuals	8q24.13	TRIB1	rs2980869-T	0.56	4E-9	(Asian initial, BMI unadjusted)	0.049	[0.033-0.065] unit decrease	Affymetrix, Illumina [~ 1900000] (imputed)	N
1550	chr8	126488249	126488250	rs2980869	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	LDL cholesterol levels	22,526 East Asian ancestry individuals	37,842 East Asian ancestry individuals	8q24.13	TRIB1	rs2980869-T	0.56	3E-6	(BMI unadjusted)	0.045	[0.025-0.065] unit decrease	Affymetrix, Illumina [~ 2400000] (imputed)	N
1550	chr8	126488929	126488930	rs2980871	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	8q24.13		rs2980871-G	NR	2E-9		0.0322	[0.022-0.043] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1550	chr8	126490497	126490498	rs58253018	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	8q24.13	RP11-136O12.2	rs58253018-A	0.3738	2E-182		0.0984	[0.092-0.105] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1550	chr8	126490971	126490972	rs2954029	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	HDL cholesterol levels	115,082 European ancestry individuals	NA	8q24.13		rs2954029-A	0.535109	5E-10		0.0230716	[0.016-0.03] unit decrease	NR [11722792] (imputed)	N
1550	chr8	126490971	126490972	rs2954029	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	8q24.13		rs2954029-A	0.535109	4E-22		0.0359551	[0.029-0.043] unit decrease	NR [11722792] (imputed)	N
1550	chr8	126490971	126490972	rs2954029	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	8q24.13		rs2954029-A	0.535109	4E-14		0.0280858	[0.021-0.035] unit decrease	NR [11722792] (imputed)	N
1550	chr8	126490971	126490972	rs2954029	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	8q24.13		rs2954029-A	0.535109	1E-20		0.0348144	[0.027-0.042] unit decrease	NR [11722792] (imputed)	N
1550	chr8	126490971	126490972	rs2954029	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Acetone levels	115,079 European ancestry individuals	NA	8q24.13		rs2954029-A	0.535119	1E-9		0.0250853	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
1550	chr8	126490971	126490972	rs2954029	33536631	Bell S	2021-02-03	Commun Biol	A genome-wide meta-analysis yields 46 new loci associating with biomarkers of iron homeostasis.	Iron status biomarkers (ferritin levels)	246,139 European ancestry individuals	NA	8q24.13	TRIB1	rs2954029-T	0.479	1E-12		0.024	[0.031-0.018] SD decrease	Affymetrix, Illumina [40000000] (imputed)	N
1550	chr8	126490971	126490972	rs2954029	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	8q24.13	NR	rs2954029-?	NR	9E-12		0.02807433	[0.02-0.036] unit decrease	Illumina [31978265] (imputed)	N
1550	chr8	126490971	126490972	rs2954029	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	8q24.13	NR	rs2954029-?	NR	2E-7		1.858313	[1.16-2.55] unit decrease	Illumina [32003504] (imputed)	N
1550	chr8	126490971	126490972	rs2954029	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	Triglyceride levels	up to 23,508 African ancestry individuals, 4,649 Asian ancestry individuals, up to 77,047 European ancestry individuals, 6,705 Hispanic individuals	NA	8q24.13		rs2954029-A	0.5312	2E-30	(EA)	0.0298	[0.025-0.035] unit increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1550	chr8	126490971	126490972	rs2954029	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	LDL cholesterol levels	up to 23,353 African ancestry individuals, 13,171 Asian ancestry individuals, up to 82,522 European ancestry individuals, 6,646 Hispanic individuals	NA	8q24.13		rs2954029-A	0.545	4E-17		1.2869	[0.99-1.59] unit increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1550	chr8	126490971	126490972	rs2954029	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	HDL cholesterol levels	up to 23,761 African ancestry individuals, 13,171 Asian ancestry individuals, up to 90,272 European ancestry individuals, 6,620 Hispanic individuals	NA	8q24.13		rs2954029-A	0.5319	2E-14	(EA)	0.0095	[0.0071-0.0119] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1550	chr8	126490971	126490972	rs2954029	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q24.13	NR	rs2954029-A	NR	2E-108		0.083	unit increase	Affymetrix [at least 7091467] (imputed)	N
1550	chr8	126490971	126490972	rs2954029	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q24.13	NR	rs2954029-A	0.596	2E-12	(Hispanic)	0.099	unit increase	Affymetrix [at least 7091467] (imputed)	N
1550	chr8	126490971	126490972	rs2954029	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q24.13	NR	rs2954029-A	0.539	1E-96	(EA)	0.086	unit increase	Affymetrix [at least 7091467] (imputed)	N
1550	chr8	126490971	126490972	rs2954029	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q24.13	NR	rs2954029-A	0.491	3E-6	(East Asian)	0.068	unit increase	Affymetrix [at least 7091467] (imputed)	N
1550	chr8	126490971	126490972	rs2954029	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q24.13	NR	rs2954029-A	NR	6E-64		0.071	unit increase	Affymetrix [at least 7091467] (imputed)	N
1550	chr8	126490971	126490972	rs2954029	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q24.13	NR	rs2954029-A	0.596	6E-7	(Hispanic)	0.077	unit increase	Affymetrix [at least 7091467] (imputed)	N
1550	chr8	126490971	126490972	rs2954029	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q24.13	NR	rs2954029-A	0.539	1E-53	(EA)	0.071	unit increase	Affymetrix [at least 7091467] (imputed)	N
1550	chr8	126490971	126490972	rs2954029	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q24.13	NR	rs2954029-A	0.491	2E-6	(East Asian)	0.077	unit increase	Affymetrix [at least 7091467] (imputed)	N
1550	chr8	126490971	126490972	rs2954029	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q24.13	NR	rs2954029-A	NR	7E-43		0.059	unit increase	Affymetrix [at least 7091467] (imputed)	N
1550	chr8	126490971	126490972	rs2954029	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q24.13	NR	rs2954029-A	0.539	7E-36	(EA)	0.059	unit increase	Affymetrix [at least 7091467] (imputed)	N
1550	chr8	126490971	126490972	rs2954029	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q24.13	NR	rs2954029-A	0.491	3E-6	(East Asian)	0.076	unit increase	Affymetrix [at least 7091467] (imputed)	N
1550	chr8	126490971	126490972	rs2954029	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q24.13	NR	rs2954029-A	NR	4E-25		0.035	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1550	chr8	126490971	126490972	rs2954029	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q24.13	NR	rs2954029-A	0.539	4E-24	(EA)	0.038	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1550	chr8	126490971	126490972	rs2954029	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Alanine transaminase levels	134,182 Japanese ancestry individuals	NA	8q24.13	TRIB1, LINC00861	rs2954029-?	NR	2E-16		0.03112	[0.024-0.039] unit decrease	Illumina [6108953] (imputed)	N
1550	chr8	126490971	126490972	rs2954029	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	8q24.13	intergenic	rs2954029-A	0.5421	1E-25		0.0666	[0.054-0.079] unit increase	NR [8041861] (imputed)	N
1550	chr8	126490971	126490972	rs2954029	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	8q24.13	intergenic	rs2954029-A	0.5398	6E-23		0.0546	[0.044-0.065] unit increase	NR [8041861] (imputed)	N
1550	chr8	126490971	126490972	rs2954029	28714975	Nelson CP	2017-07-17	Nat Genet	Association analyses based on false discovery rate implicate new loci for coronary artery disease.	Coronary artery disease (myocardial infarction, percutaneous transluminal coronary angioplasty, coronary artery bypass grafting, angina or chromic ischemic heart disease)	18,467 European and unknown ancestry cases, 45,264 European and unknown ancestry controls	57,347 European and unknown ancestry cases, 219,521 European and unknown ancestry controls	8q24.13	TRIB1	rs2954029-A	0.541	5E-13		1.06	[1.04-1.08]	Affymetrix [9149595] (imputed)	N
1550	chr8	126490971	126490972	rs2954029	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Triglyceride levels	28,183 East Asian ancestry individuals, 177,861 European ancestry individuals	10,857 Chinese ancestry individuals	8q24.13	TRIB1	rs2954029-A	0.44	3E-13	(Asian initial, BMI unadjusted)	0.064	[0.046-0.082] unit increase	Affymetrix, Illumina [up to 1900000] (imputed)	N
1550	chr8	126490971	126490972	rs2954029	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Total cholesterol levels	32,576 East Asian ancestry individuals, 187,365 European ancestry individuals	10,855 Chinese ancestry individuals	8q24.13	TRIB1	rs2954029-A	0.532	1E-77	(Trans-ethnic initial)	0.0622	[0.055-0.069] unit increase (EA Beta values)	Affymetrix, Illumina [up to 1900000] (imputed)	N
1550	chr8	126490971	126490972	rs2954029	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	LDL cholesterol levels	32,285 East Asian ancestry individuals, 173,082 European ancestry individuals	8,478 Chinese ancestry individuals	8q24.13	TRIB1	rs2954029-A	0.532	2E-56	(Trans-ethnic initial)	0.0564	[0.049-0.063] unit increase (EA Beta value)	Affymetrix, Illumina [~ 1900000] (imputed)	N
1550	chr8	126490971	126490972	rs2954029	27005778	Kettunen J	2016-03-23	Nat Commun	Genome-wide study for circulating metabolites identifies 62 loci and reveals novel systemic effects of LPA.	Metabolite levels (lipoprotein measures)	2,118 Erasmus Rucphen (founder/genetic isolate), 22,807 European ancestry individuals	NA	8q24.13	TRIB1	rs2954029-T	0.48	3E-16	(Triglycerides in very small VLDL)	0.09	[0.07-0.11] unit decrease	Affymetrix, Illumina, Perlegen [12133295] (imputed)	N
1550	chr8	126490971	126490972	rs2954029	26582766	Lu X	2015-11-18	Circ Cardiovasc Genet	Genetic Susceptibility to Lipid Levels and Lipid Change Over Time and Risk of Incident Hyperlipidemia in Chinese Populations.	Triglycerides	8,344 Han Chinese ancestry individuals	14,739 Han Chinese ancestry individuals	8q24.13	TRIB1	rs2954029-A	0.41	2E-20		0.023	[0.019-0.027] unit increase	Affymetrix, Illumina [2573667] (imputed)	N
1550	chr8	126490971	126490972	rs2954029	26582766	Lu X	2015-11-18	Circ Cardiovasc Genet	Genetic Susceptibility to Lipid Levels and Lipid Change Over Time and Risk of Incident Hyperlipidemia in Chinese Populations.	Cholesterol, total	8,344 Han Chinese ancestry individuals	14,739 Han Chinese ancestry individuals	8q24.13	TRIB1	rs2954029-A	0.41	1E-11		2.218	[1.58-2.85] unit increase	Affymetrix, Illumina [2573667] (imputed)	N
1550	chr8	126490971	126490972	rs2954029	26343387	Nikpay M	2015-09-07	Nat Genet	A comprehensive 1,000 Genomes-based genome-wide association meta-analysis of coronary artery disease.	Coronary artery disease	42,096 European ancestry cases, 361 African American cases, 758 Hispanic American cases, 12,658 South Asian ancestry cases, 1,802 Lebanese ancestry cases, 3,614 East Asian ancestry cases, 99,121 European ancestry controls, 2,778 African American controls, 3,337 Hispanic American controls, 12,899 South Asian ancestry controls, 466 Lebanese ancestry controls, 7,709 East Asian ancestry controls	NA	8q24.13	TRIB1	rs2954029-A	0.551395	3E-6		1.04	[1.03- 1.06]	Affymetrix, Illumina [8600000] (imputed)	N
1550	chr8	126490971	126490972	rs2954029	26160806	Proust C	2015-08-01	Circ Cardiovasc Genet	Contribution of Rare and Common Genetic Variants to Plasma Lipid Levels and Carotid Stiffness and Geometry: A Substudy of the Paris Prospective Study 3.	Triglycerides	3,681 individuals	NA	8q24.13	BUD13, ZNF259, RP11-136012.2	rs2954029-T	0.456	5E-8		0.05	[0.032-0.068] unit decrease	Illumina [101597]	N
1550	chr8	126490971	126490972	rs2954029	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Triglycerides	94,595 European ancestry individuals	93,982 European ancestry individuals	8q24.13	TRIB1	rs2954029-T	0.47	1E-107		0.076	[NR] mg/dL decrease	NR [NR] (imputed)	N
1550	chr8	126490971	126490972	rs2954029	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	8q24.13	TRIB1	rs2954029-T	0.47	2E-50		0.056	[NR] unit decrease	NR [NR] (imputed)	N
1550	chr8	126490971	126490972	rs2954029	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	8q24.13	TRIB1	rs2954029-T	0.47	3E-29		0.04	[NR] unit increase	NR [NR] (imputed)	N
1550	chr8	126490971	126490972	rs2954029	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	8q24.13	TRIB1	rs2954029-T	0.47	2E-65		0.062	[NR] unit decrease	NR [NR] (imputed)	N
1550	chr8	126490971	126490972	rs2954029	20864672	Waterworth DM	2010-09-23	Arterioscler Thromb Vasc Biol	Genetic variants influencing circulating lipid levels and risk of coronary artery disease.	Triglycerides	up to 17,723 European ancestry individuals	up to 37,774 European ancestry individuals, up to 9,665 Indian Asian ancestry individuals	8q24.13	TRIB1	rs2954029-T	0.46	2E-11		0.04	[0.03-0.05] unit decrease	Affymetrix, Illumina, Perlegen [2155369] (imputed)	N
1550	chr8	126490971	126490972	rs2954029	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	Triglycerides	96,598 European ancestry individuals	NA	8q24.13	TRIB1	rs2954029-T	0.47	3E-55		5.64	[4.88-6.4] mg/dL decrease	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1550	chr8	126490971	126490972	rs2954029	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	LDL cholesterol	95,454 European ancestry individuals	NA	8q24.13	TRIB1	rs2954029-A	0.46	3E-29		1.84	[1.51-2.17] mg/dL decrease	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1550	chr8	126490971	126490972	rs2954029	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	HDL cholesterol	99,900 European ancestry individuals	NA	8q24.13	TRIB1	rs2954029-T	0.44	6E-19		0.61	[0.47-0.75] mg/dL increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1550	chr8	126490971	126490972	rs2954029	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	Cholesterol, total	100,184 European ancestry individuals	NA	8q24.13	TRIB1	rs2954029-A	0.46	5E-36		2.3	[1.93-2.67] mg/dL decrease	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1550	chr8	126490971	126490972	rs2954029	20139978	Kamatani Y	2010-02-07	Nat Genet	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Triglycerides	8,993 Japanese ancestry individuals	NA	8q24.13	TRIB1	rs2954029-T	0.53	3E-7		0.076	[0.047-0.105] unit decrease	Illumina [561583]	N
1550	chr8	126490971	126490972	rs2954029	19060906	Kathiresan S	2008-12-07	Nat Genet	Common variants at 30 loci contribute to polygenic dyslipidemia.	Triglycerides	19,840 European ancestry individuals	Up to 20,623 European ancestry individuals	8q24.13	TRIB1	rs2954029-T	0.44	3E-19		0.11	[0.07-0.15] s.d. decrease	Affymetrix, Illumina [~ 2600000] (imputed)	N
1550	chr8	126491303	126491304	rs2954030	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	8q24.13		rs2954030-?	NR	3E-22		0.00925185	[0.0074-0.0111] unit increase	NR [NR]	N
1550	chr8	126491732	126491733	rs2954031	35046404	Chou WC	2022-01-19	NPJ Genom Med	A common variant in 11q23.3 associated with hyperlipidemia is mediated by the binding and regulation of GATA4.	Hyperlipidemia	3,310 Taiwanese ancestry cases, 6,404 Taiwanese ancestry controls	829 Taiwanese ancestry cases, 1,833 Taiwanese ancestry controls	8q24.13		rs2954031-?	NR	9E-14		1.23	[1.17-1.3]	Affymetrix [597758]	N
1550	chr8	126491732	126491733	rs2954031	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	8q24.13		rs2954031-G	0.555	2E-11				Affymetrix [10369434] (imputed)	N
1550	chr8	126491732	126491733	rs2954031	32902719	Hebbar P	2020-09-09	Hum Genet	Genome-wide landscape establishes novel association signals for metabolic traits in the Arab population.	Triglyceride levels	2,732 Kuwaiti ancestry individuals	NA	8q24.13	RP11-136O12.2	rs2954031-?	NR	5E-7		5.034	NR unit decrease	Illumina [up to 1520000] (imputed)	N
1550	chr8	126491732	126491733	rs2954031	31647587	Willems EL	2019-10-24	Genet Epidemiol	Transethnic meta-analysis of metabolic syndrome in a multiethnic study.	Triglyceride levels	281 African American individuals from 73 families, 516 European American individuals from 75 families, 125 East Asian ancestry individuals from 15 families, 598 Mexican American individuals from 96 families	NA	8q24.13	TRIB1, LINC00861	rs2954031-?	NR	1E-7	(TransMeta)			Illumina [3153931] (imputed)	N
1550	chr8	126491732	126491733	rs2954031	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	8q24.13	NR	rs2954031-?	NR	4E-12		0.02840032	[0.02-0.036] unit decrease	Illumina [31978265] (imputed)	N
1550	chr8	126491732	126491733	rs2954031	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	8q24.13	NR	rs2954031-?	NR	2E-9		2.10425	[1.42-2.79] unit decrease	Illumina [32003504] (imputed)	N
1550	chr8	126491732	126491733	rs2954031	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	8q24.13	NR	rs2954031-?	NR	1E-6		1.52517	[0.91-2.14] unit decrease	Illumina [31808917] (imputed)	N
1550	chr8	126491732	126491733	rs2954031	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q24.13	NR	rs2954031-G	NR	1E-103		0.081	unit increase	Affymetrix [at least 7091467] (imputed)	N
1550	chr8	126491732	126491733	rs2954031	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q24.13	NR	rs2954031-G	0.614	3E-11	(Hispanic)	0.094	unit increase	Affymetrix [at least 7091467] (imputed)	N
1550	chr8	126491732	126491733	rs2954031	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q24.13	NR	rs2954031-G	0.564	3E-91	(EA)	0.084	unit increase	Affymetrix [at least 7091467] (imputed)	N
1550	chr8	126491732	126491733	rs2954031	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q24.13	NR	rs2954031-G	0.502	7E-7	(East Asian)	0.072	unit increase	Affymetrix [at least 7091467] (imputed)	N
1550	chr8	126491732	126491733	rs2954031	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q24.13	NR	rs2954031-G	NR	8E-56		0.066	unit increase	Affymetrix [at least 7091467] (imputed)	N
1550	chr8	126491732	126491733	rs2954031	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q24.13	NR	rs2954031-G	0.614	7E-6	(Hispanic)	0.07	unit increase	Affymetrix [at least 7091467] (imputed)	N
1550	chr8	126491732	126491733	rs2954031	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q24.13	NR	rs2954031-G	0.564	2E-47	(EA)	0.067	unit increase	Affymetrix [at least 7091467] (imputed)	N
1550	chr8	126491732	126491733	rs2954031	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q24.13	NR	rs2954031-G	0.502	8E-6	(East Asian)	0.072	unit increase	Affymetrix [at least 7091467] (imputed)	N
1550	chr8	126491732	126491733	rs2954031	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q24.13	NR	rs2954031-G	NR	5E-37		0.055	unit increase	Affymetrix [at least 7091467] (imputed)	N
1550	chr8	126491732	126491733	rs2954031	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q24.13	NR	rs2954031-G	0.564	4E-31	(EA)	0.055	unit increase	Affymetrix [at least 7091467] (imputed)	N
1550	chr8	126491732	126491733	rs2954031	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q24.13	NR	rs2954031-G	NR	3E-25		0.036	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1550	chr8	126491732	126491733	rs2954031	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q24.13	NR	rs2954031-G	0.564	3E-23	(EA)	0.037	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1550	chr8	126491732	126491733	rs2954031	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	8q24.13	RP11-136O12.2	rs2954031-T	0.4452	1E-9		0.0219224	[0.015-0.029] unit increase	Affymetrix [~ 2500000] (imputed)	N
1550	chr8	126491732	126491733	rs2954031	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	8q24.13	RP11-136O12.2	rs2954031-T	0.4453	5E-10		0.02247202	[0.015-0.03] unit increase	Affymetrix [~ 2500000] (imputed)	N
1550	chr8	126491732	126491733	rs2954031	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	8q24.13	RP11-136O12.2	rs2954031-T	0.4452	2E-9		0.02164556	[0.015-0.029] unit increase	Affymetrix [~ 2500000] (imputed)	N
1550	chr8	126491732	126491733	rs2954031	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	8q24.13	RP11-136O12.2	rs2954031-T	0.4453	8E-10		0.02220706	[0.015-0.029] unit increase	Affymetrix [~ 2500000] (imputed)	N
1550	chr8	126491732	126491733	rs2954031	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	8q24.13	RP11-136O12.2	rs2954031-T	0.4452	2E-10		0.02300901	[0.016-0.03] unit increase	Affymetrix [~ 2500000] (imputed)	N
1550	chr8	126491732	126491733	rs2954031	26780889	Below JE	2016-01-19	Sci Rep	Meta-analysis of lipid-traits in Hispanics identifies novel loci, population-specific effects, and tissue-specific enrichment of eQTLs.	Triglycerides	4,383 Mexican ancestry individuals	7,876 Latin American/Hispanic individuals,  European ancestry individuals (Global Lipids Genetics Consortium et al, 2013)	8q24.13	TRIB1	rs2954031-G	0.612	3E-13	(Hispanic)	0.098	[0.073-0.123] unit increase	Affymetrix [at least 370268] (imputed)	N
1550	chr8	126492926	126492927	rs55748921	30837465	Wittemans LBL	2019-03-05	Nat Commun	Assessing the causal association of glycine with risk of cardio-metabolic diseases.	Glycine levels	80,003 European ancestry individuals	NA	8q24.13	NR	rs55748921-C	0.693	3E-11	(conditional)			Affymetrix, Illumina [NR] (imputed)	N
1550	chr8	126493391	126493392	rs2954032	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x short total sleep time interaction (2df test)	3,007 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,474 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, up to 11,901 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,567 European ancestry controls, 4,047 Hispanic/Latino controls	up to 221 African American short sleepers, 629 East Asian ancestry short sleepers, up to 9,585 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 2,504 East Asian ancestry controls, up to 38,027 European ancestry controls, 10,061 Hispanic controls	8q24.13	AC091114.1	rs2954032-?	NR	3E-30		0.01017	[0.0082-0.0122] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
1550	chr8	126493745	126493746	rs2954033	21386085	Kraja AT	2011-03-08	Diabetes	A bivariate genome-wide approach to metabolic syndrome: STAMPEED consortium.	Triglycerides-Blood Pressure (TG-BP)	22,161 European ancestry individuals	NA	8q24.13	TRIB1	rs2954033-A	NR	9E-9		0.17	[0.11-0.23] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1550	chr8	126494763	126494764	rs4552916	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	8q24.13	RP11-136O12.2	rs4552916-G	NR	2E-8		0.0193223	[0.013-0.026] unit increase	Affymetrix [321169] (imputed)	N
1550	chr8	126495817	126495818	rs10808546	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	8q24.13		rs10808546-C	0.552	2E-16				Affymetrix [10369434] (imputed)	N
1550	chr8	126495817	126495818	rs10808546	32981348	Klarin D	2020-09-28	Circulation	Genetic Architecture of Abdominal Aortic Aneurysm in the Million Veteran Program.	Abdominal aortic aneurysm	7,642 European ancestry cases, 172,172 European ancestry controls	4,972 European ancestry cases, 99,858 European ancestry controls	8q24.13	RP11-136O12.2, TRIB1	rs10808546-C	0.5646	1E-10		1.1	1.07-1.13	Affymetrix [18689289] (imputed)	N
1550	chr8	126495817	126495818	rs10808546	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	8q24.13	RP11-136O12.2	rs10808546-T	0.44729	1E-13		0.016571965	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1550	chr8	126495817	126495818	rs10808546	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	8q24.13	RP11-136O12.2	rs10808546-T	0.447263	1E-27		0.024348453	[0.02-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1550	chr8	126495817	126495818	rs10808546	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	8q24.13	NR	rs10808546-?	NR	2E-16				Affymetrix [~ 8270000] (imputed)	N
1550	chr8	126495817	126495818	rs10808546	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	8q24.13	NR	rs10808546-?	NR	1E-10		0.02784739	[0.019-0.036] unit decrease	Illumina [31978265] (imputed)	N
1550	chr8	126495817	126495818	rs10808546	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	8q24.13	NR	rs10808546-?	NR	4E-6		1.72245	[0.99-2.45] unit decrease	Illumina [32003504] (imputed)	N
1550	chr8	126495817	126495818	rs10808546	30911093	Bandesh K	2019-03-25	J Hum Genet	Genome-wide association study of blood lipids in Indians confirms universality of established variants.	Triglyceride levels	1,036 Indian ancestry individuals	4,235 Indian ancestry individuals, 188,577 European ancestry individuals, 7,898 East Asian, South Asian and African ancestry individuals	8q24.13	TRIB1	rs10808546-?	NR	5E-7	(Indian)			Illumina [551825]	N
1550	chr8	126495817	126495818	rs10808546	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	8q24.13	NR	rs10808546-T	0.422	2E-20		0.0159	[0.013-0.019] unit decrease	NR [~ 27400000] (imputed)	N
1550	chr8	126495817	126495818	rs10808546	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	8q24.13	NR	rs10808546-T	0.4215	7E-7		0.0084	[0.0051-0.0117] unit decrease	NR [~ 27400000] (imputed)	N
1550	chr8	126495817	126495818	rs10808546	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q24.13	NR	rs10808546-C	NR	2E-96		0.08	unit increase	Affymetrix [at least 7091467] (imputed)	N
1550	chr8	126495817	126495818	rs10808546	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q24.13	NR	rs10808546-C	0.647	7E-9	(Hispanic)	0.082	unit increase	Affymetrix [at least 7091467] (imputed)	N
1550	chr8	126495817	126495818	rs10808546	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q24.13	NR	rs10808546-C	0.56	3E-93	(EA)	0.084	unit increase	Affymetrix [at least 7091467] (imputed)	N
1550	chr8	126495817	126495818	rs10808546	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q24.13	NR	rs10808546-C	NR	1E-53		0.066	unit increase	Affymetrix [at least 7091467] (imputed)	N
1550	chr8	126495817	126495818	rs10808546	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q24.13	NR	rs10808546-C	0.647	7E-7	(Hispanic)	0.077	unit increase	Affymetrix [at least 7091467] (imputed)	N
1550	chr8	126495817	126495818	rs10808546	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q24.13	NR	rs10808546-C	0.56	1E-48	(EA)	0.067	unit increase	Affymetrix [at least 7091467] (imputed)	N
1550	chr8	126495817	126495818	rs10808546	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q24.13	NR	rs10808546-C	NR	2E-35		0.054	unit increase	Affymetrix [at least 7091467] (imputed)	N
1550	chr8	126495817	126495818	rs10808546	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q24.13	NR	rs10808546-C	0.56	3E-32	(EA)	0.056	unit increase	Affymetrix [at least 7091467] (imputed)	N
1550	chr8	126495817	126495818	rs10808546	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q24.13	NR	rs10808546-C	NR	8E-23		0.034	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1550	chr8	126495817	126495818	rs10808546	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q24.13	NR	rs10808546-C	0.56	1E-23	(EA)	0.038	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1550	chr8	126495817	126495818	rs10808546	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	HDL cholesterol levels	34,930 East Asian ancestry individuals, 187,167 European ancestry individuals	8,741 Chinese ancestry individuals	8q24.13	TRIB1	rs10808546-T	0.446	1E-26	(Trans-ethnic initial)	0.0409	[0.034-0.048] unit increase (EA Beta values)	Affymetrix, Illumina [~ 1900000] (imputed)	N
1550	chr8	126497022	126497023	rs144362803	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	8q24.13	RP11-136O12.2	rs144362803-A	NR	7E-16		0.111841	[0.085-0.139] unit increase	Affymetrix [319769] (imputed)	N
1550	chr8	126497022	126497023	rs144362803	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	8q24.13	RP11-136O12.2	rs144362803-A	NR	3E-15		0.109443	[0.082-0.137] unit increase	Affymetrix [319769] (imputed)	N
1550	chr8	126497022	126497023	rs144362803	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8q24.13	RP11-136O12.2	rs144362803-A	NR	6E-11		0.0916281	[0.064-0.119] unit increase	Affymetrix [321114] (imputed)	N
1550	chr8	126497022	126497023	rs144362803	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	8q24.13	RP11-136O12.2	rs144362803-A	NR	8E-14		0.104582	[0.077-0.132] unit increase	Affymetrix [321169] (imputed)	N
1550	chr8	126498264	126498265	rs35309034	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	8q24.13		rs35309034-A	NR	6E-24		0.0166	[0.013-0.02] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1550	chr8	126498686	126498687	rs62523860	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	8q24.13	NR	rs62523860-A	NR	4E-17		0.0664	[0.051-0.082] unit decrease	Affymetrix [9000000] (imputed)	N
1550	chr8	126498686	126498687	rs62523860	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	8q24.13	NR	rs62523860-A	NR	2E-9		0.0477	[0.032-0.063] unit decrease	Affymetrix [9000000] (imputed)	N
1550	chr8	126498686	126498687	rs62523860	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	8q24.13	NR	rs62523860-A	NR	4E-11		0.0523	[0.037-0.068] unit decrease	Affymetrix [9000000] (imputed)	N
1550	chr8	126498686	126498687	rs62523860	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	8q24.13	NR	rs62523860-A	NR	1E-14		0.0612	[0.046-0.077] unit decrease	Affymetrix [9000000] (imputed)	N
1550	chr8	126498827	126498828	rs4870941	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	8q24.13	AC091114.1	rs4870941-C	0.238	1E-39		0.0297	[0.025-0.034] unit decrease	Affymetrix [18391927] (imputed)	N
1550	chr8	126498827	126498828	rs4870941	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	8q24.13		rs4870941-?	NR	5E-42				NR [~ 8900000] (imputed)	N
1550	chr8	126498827	126498828	rs4870941	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	8q24.13	NR	rs4870941-?	NR	3E-6	(male)	0.1938	[0.11-0.28] unit decrease	Affymetrix [7794483] (imputed)	N
1550	chr8	126498827	126498828	rs4870941	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	8q24.13	NR	rs4870941-?	NR	2E-9		0.15755	[0.11-0.21] unit decrease	Affymetrix [7794483] (imputed)	N
1550	chr8	126498827	126498828	rs4870941	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q24.13	NR	rs4870941-G	NR	7E-19		0.045	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1550	chr8	126498827	126498828	rs4870941	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q24.13	NR	rs4870941-G	0.758	6E-14	(EA)	0.042	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1550	chr8	126498827	126498828	rs4870941	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q24.13	NR	rs4870941-G	NR	2E-14		0.04	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1550	chr8	126498827	126498828	rs4870941	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q24.13	NR	rs4870941-G	0.758	1E-10	(EA)	0.037	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1550	chr8	126499428	126499429	rs2980859	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	74,970 East Asian ancestry individuals	NA	8q24.13		rs2980859-G	0.680204	1E-9		0.0307801	[0.021-0.041] unit increase	Illumina [13465896] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	8q24.13		rs28601761-C	0.579841	6E-88		0.0795249	[0.072-0.087] unit increase	NR [11722792] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	8q24.13		rs28601761-C	0.579841	8E-88		0.0802	[0.072-0.088] unit increase	NR [11722792] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	8q24.13		rs28601761-C	0.579841	2E-78		0.0744684	[0.067-0.082] unit increase	NR [11722792] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very small VLDL	115,082 European ancestry individuals	NA	8q24.13		rs28601761-C	0.579841	7E-117		0.0945317	[0.086-0.103] unit increase	NR [11722792] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large VLDL	115,082 European ancestry individuals	NA	8q24.13		rs28601761-C	0.579841	3E-84		0.0784878	[0.071-0.086] unit increase	NR [11722792] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large HDL	115,082 European ancestry individuals	NA	8q24.13		rs28601761-C	0.579841	6E-76		0.0759922	[0.068-0.084] unit increase	NR [11722792] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small VLDL	115,082 European ancestry individuals	NA	8q24.13		rs28601761-C	0.579841	4E-100		0.0865324	[0.079-0.095] unit increase	NR [11722792] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small LDL	115,082 European ancestry individuals	NA	8q24.13		rs28601761-C	0.579841	1E-109		0.0911275	[0.083-0.099] unit increase	NR [11722792] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small HDL	115,082 European ancestry individuals	NA	8q24.13		rs28601761-C	0.579841	3E-113		0.092239	[0.084-0.1] unit increase	NR [11722792] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium LDL	115,082 European ancestry individuals	NA	8q24.13		rs28601761-C	0.579841	2E-116		0.0946794	[0.087-0.103] unit increase	NR [11722792] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium HDL	115,082 European ancestry individuals	NA	8q24.13		rs28601761-C	0.579841	5E-93		0.0848465	[0.077-0.093] unit increase	NR [11722792] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large VLDL	115,082 European ancestry individuals	NA	8q24.13		rs28601761-C	0.579841	2E-73		0.073721	[0.066-0.082] unit increase	NR [11722792] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large HDL	115,082 European ancestry individuals	NA	8q24.13		rs28601761-C	0.579841	6E-49		0.059104	[0.051-0.067] unit increase	NR [11722792] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	8q24.13		rs28601761-C	0.579841	3E-65		0.0696028	[0.062-0.078] unit increase	NR [11722792] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in VLDL	115,082 European ancestry individuals	NA	8q24.13		rs28601761-C	0.579841	7E-90		0.0815708	[0.074-0.09] unit increase	NR [11722792] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in HDL	115,082 European ancestry individuals	NA	8q24.13		rs28601761-C	0.579841	3E-98		0.0869659	[0.079-0.095] unit increase	NR [11722792] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total triglycerides levels	115,082 European ancestry individuals	NA	8q24.13		rs28601761-C	0.579841	9E-100		0.0863904	[0.078-0.094] unit increase	NR [11722792] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large VLDL	115,082 European ancestry individuals	NA	8q24.13		rs28601761-C	0.579841	5E-92		0.0826333	[0.075-0.091] unit increase	NR [11722792] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large VLDL	115,082 European ancestry individuals	NA	8q24.13		rs28601761-C	0.579841	1E-86		0.0805155	[0.073-0.089] unit increase	NR [11722792] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	8q24.13		rs28601761-C	0.579841	4E-74		0.0741421	[0.066-0.082] unit increase	NR [11722792] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in VLDL	115,082 European ancestry individuals	NA	8q24.13		rs28601761-C	0.579841	7E-101		0.0882143	[0.08-0.096] unit increase	NR [11722792] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total fatty acid levels	115,006 European ancestry individuals	NA	8q24.13		rs28601761-C	0.579897	3E-107		0.0918787	[0.084-0.1] unit increase	NR [11722792] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Saturated fatty acid levels	115,006 European ancestry individuals	NA	8q24.13		rs28601761-C	0.579897	2E-105		0.0909348	[0.083-0.099] unit increase	NR [11722792] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	8q24.13		rs28601761-C	0.579897	5E-67		0.0677588	[0.06-0.075] unit increase	NR [11722792] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	8q24.13		rs28601761-C	0.579897	3E-53		0.0623923	[0.054-0.07] unit decrease	NR [11722792] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to monounsaturated fatty acids	115,006 European ancestry individuals	NA	8q24.13		rs28601761-C	0.579897	2E-54		0.062988	[0.055-0.071] unit decrease	NR [11722792] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	8q24.13		rs28601761-C	0.579897	3E-98		0.0853476	[0.077-0.093] unit decrease	NR [11722792] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of monounsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	8q24.13		rs28601761-C	0.579897	8E-48		0.0588524	[0.051-0.067] unit increase	NR [11722792] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of linoleic acid to total fatty acids	115,006 European ancestry individuals	NA	8q24.13		rs28601761-C	0.579897	2E-59		0.0663019	[0.058-0.074] unit decrease	NR [11722792] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	8q24.13		rs28601761-C	0.579841	7E-62		0.0701889	[0.062-0.078] unit decrease	NR [11722792] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	8q24.13		rs28601761-C	0.579841	2E-26		0.044717	[0.036-0.053] unit decrease	NR [11722792] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	8q24.13		rs28601761-C	0.579841	3E-39		0.0525599	[0.045-0.06] unit increase	NR [11722792] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	8q24.13		rs28601761-C	0.579853	6E-81		0.078163	[0.07-0.086] unit increase	NR [11722792] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	8q24.13		rs28601761-C	0.579841	8E-23		0.0401959	[0.032-0.048] unit increase	NR [11722792] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large VLDL	115,082 European ancestry individuals	NA	8q24.13		rs28601761-C	0.579841	3E-94		0.0839121	[0.076-0.092] unit increase	NR [11722792] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large VLDL	115,082 European ancestry individuals	NA	8q24.13		rs28601761-C	0.579841	7E-95		0.0841628	[0.076-0.092] unit increase	NR [11722792] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	8q24.13		rs28601761-C	0.579841	1E-82		0.0780265	[0.07-0.086] unit increase	NR [11722792] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Monounsaturated fatty acid levels	115,006 European ancestry individuals	NA	8q24.13		rs28601761-C	0.579897	6E-102		0.0893291	[0.081-0.097] unit increase	NR [11722792] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycine levels	114,978 European ancestry individuals	NA	8q24.13		rs28601761-C	0.579843	2E-52		0.0609019	[0.053-0.069] unit decrease	NR [11722792] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glutamine levels	114,751 European ancestry individuals	NA	8q24.13		rs28601761-C	0.579881	7E-14		0.0316719	[0.023-0.04] unit decrease	NR [11722792] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	8q24.13		rs28601761-C	0.579841	3E-63		0.0683624	[0.06-0.076] unit decrease	NR [11722792] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	8q24.13		rs28601761-C	0.579841	8E-75		0.0736808	[0.066-0.082] unit decrease	NR [11722792] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	8q24.13		rs28601761-C	0.579841	9E-55		0.0625079	[0.055-0.07] unit decrease	NR [11722792] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	8q24.13		rs28601761-C	0.580001	1E-14		0.0324658	[0.024-0.041] unit decrease	NR [11722792] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	8q24.13		rs28601761-C	0.579841	2E-95		0.0847069	[0.077-0.093] unit increase	NR [11722792] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	8q24.13		rs28601761-C	0.579841	1E-95		0.0847211	[0.077-0.093] unit increase	NR [11722792] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	8q24.13		rs28601761-C	0.579841	5E-84		0.0789352	[0.071-0.087] unit increase	NR [11722792] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large VLDL particles	115,082 European ancestry individuals	NA	8q24.13		rs28601761-C	0.579841	2E-94		0.0836079	[0.076-0.092] unit increase	NR [11722792] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large VLDL particles	115,082 European ancestry individuals	NA	8q24.13		rs28601761-C	0.579841	8E-93		0.0832609	[0.075-0.091] unit increase	NR [11722792] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of chylomicrons and extremely large VLDL particles	115,082 European ancestry individuals	NA	8q24.13		rs28601761-C	0.579841	3E-80		0.0769678	[0.069-0.085] unit increase	NR [11722792] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Citrate levels	115,068 European ancestry individuals	NA	8q24.13		rs28601761-C	0.579865	1E-28		0.0460432	[0.038-0.054] unit decrease	NR [11722792] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	8q24.13		rs28601761-C	0.579841	2E-65		0.0721878	[0.064-0.08] unit increase	NR [11722792] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	8q24.13		rs28601761-C	0.579841	1E-41		0.0569185	[0.049-0.065] unit increase	NR [11722792] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	8q24.13		rs28601761-C	0.579841	1E-82		0.0785682	[0.071-0.087] unit decrease	NR [11722792] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	8q24.13		rs28601761-C	0.579841	5E-71		0.0716634	[0.064-0.08] unit decrease	NR [11722792] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	8q24.13		rs28601761-C	0.579841	1E-91		0.0828384	[0.075-0.091] unit increase	NR [11722792] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	8q24.13		rs28601761-C	0.579841	2E-71		0.0718079	[0.064-0.08] unit decrease	NR [11722792] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	8q24.13		rs28601761-C	0.579841	1E-59		0.0647386	[0.057-0.073] unit decrease	NR [11722792] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	8q24.13		rs28601761-C	0.579841	3E-96		0.0858632	[0.078-0.094] unit increase	NR [11722792] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	8q24.13		rs28601761-C	0.579841	4E-89		0.0814759	[0.074-0.089] unit increase	NR [11722792] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for VLDL particles	115,082 European ancestry individuals	NA	8q24.13		rs28601761-C	0.579841	1E-53		0.0608048	[0.053-0.069] unit increase	NR [11722792] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Acetate levels	115,050 European ancestry individuals	NA	8q24.13		rs28601761-C	0.579835	3E-9		0.0252283	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial triglycerides levels in small LDL	4,348 individuals	NA	8q24.13		rs28601761-G	0.45	7E-8		0.12	[0.081-0.159] mmol/l decrease	Illumina [7701709] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total fatty acids	4,348 individuals	NA	8q24.13		rs28601761-G	0.456137818	4E-8		0.120556	[0.078-0.164] mmol/l decrease	Illumina [7701709] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total lipids in chylomicrons and extremely large VLDL	4,734 individuals	NA	8q24.13		rs28601761-G	0.45	6E-8		0.12	[0.081-0.159] mmol/l decrease	Illumina [7701709] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total fatty acids	4,734 individuals	NA	8q24.13		rs28601761-G	0.45	6E-8		0.11	[0.071-0.149] mmol/l decrease	Illumina [7701709] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total cholesterol in chylomicrons and extremely large VLDL	4,734 individuals	NA	8q24.13		rs28601761-G	0.451071229	2E-8		0.129207	[0.084-0.174] mmol/l decrease	Illumina [7701709] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting phospholipid levels in chylomicrons and extremely large VLDL	4,734 individuals	NA	8q24.13		rs28601761-G	0.45	7E-8		0.12	[0.081-0.159] mmol/l decrease	Illumina [7701709] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting chylomicrons and extremely large VLDL particle concentration	4,734 individuals	NA	8q24.13		rs28601761-G	0.45	6E-8		0.12	[0.081-0.159] mmol/l decrease	Illumina [7701709] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting cholesterol esters in chylomicrons and extremely large VLDL	4,734 individuals	NA	8q24.13		rs28601761-G	0.451058824	1E-8		0.130345	[0.086-0.175] mmol/l decrease	Illumina [7701709] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	8q24.13		rs28601761-G	NR	1E-177		0.0615	[0.057-0.066] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (salicylic acid and derivatives)	61,583 European ancestry cases, 50,427 European ancestry controls, 41,461 East Asian ancestry cases, 137,265 East Asian ancestry controls	NA	8q24.13		rs28601761-G	NR	4E-14		0.0501	[0.037-0.063] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antithrombotic agents)	67,653 European ancestry cases, 85,986 European ancestry controls, 54,220 East Asian ancestry cases, 124,506 East Asian ancestry controls	NA	8q24.13		rs28601761-G	NR	8E-15		0.0452	[0.034-0.057] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	8q24.13		rs28601761-G	NR	2E-132		0.0553	[0.051-0.06] unit decrease	Affymetrix, Illumina [20521447] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	8q24.13	TRIB1	rs28601761-C	0.581029	3E-279		0.0082225	[0.0078-0.0087] unit increase	Affymetrix [13995440] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	33893285	Guindo-Martinez M	2021-04-23	Nat Commun	The impact of non-additive genetic associations on age-related complex diseases.	Dyslipidemia	30,244 European ancestry cases, 26,393 European ancestry controls	NA	8q24.13		rs28601761-G	0.417	7E-29		0.86		Affymetrix [15679186] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	8q24.13	NR	rs28601761-G	0.419	9E-10		0.001306	[0.00085-0.00176] unit decrease	Affymetrix [NR] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	8q24.13	TRIB1, FAM84B	rs28601761-C	0.58	2E-149		26.0	z-score increase	Affymetrix [4311822] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	High density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	8q24.13	TRIB1, LINC00861	rs28601761-?		2E-16		0.0417	[0.032-0.052] unit increase	Illumina [31500000] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Kidney injury molecule 1 levels	21,758 European ancestry individuals	9,173 individuals	8q24.13		rs28601761-C	0.58	1E-13		0.0612	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Chitinase-3-like protein 1 levels	21,758 European ancestry individuals	9,173 individuals	8q24.13		rs28601761-C	0.58	3E-43		0.109	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	8q24.13	TRIB1, LINC00861	rs28601761-?	NR	7E-22		0.0508658	[0.04-0.061] unit decrease	Illumina [4804024] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	8q24.13	RP11-136O12.2	rs28601761-G	0.418694	1E-52		0.034927223	[0.03-0.039] unit decrease	Affymetrix [93095623] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	8q24.13	RP11-136O12.2	rs28601761-G	0.418678	1E-37		0.029310297	[0.025-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	8q24.13	RP11-136O12.2	rs28601761-G	0.418721	6E-11		0.02458615	[0.017-0.032] unit increase	Affymetrix [93095623] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	8q24.13	RP11-136O12.2	rs28601761-G	0.418759	5E-21		0.021484677	[0.017-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q24.13	NR	rs28601761-G	0.364823	6E-31				Affymetrix, Illumina [24332387] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	8q24.13	NR	rs28601761-G	0.418588	2E-34		0.023201	[0.019-0.027] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q24.13	NR	rs28601761-G	0.372847	3E-13				Affymetrix, Illumina [24246363] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	8q24.13	NR	rs28601761-G	0.418569	4E-16		0.015164	[0.012-0.019] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q24.13	NR	rs28601761-G	0.367884	1E-58				Affymetrix, Illumina [21126107] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q24.13	NR	rs28601761-G	0.369471	8E-42				Affymetrix, Illumina [20825802] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	8q24.13	NR	rs28601761-G	0.418858	4E-45		0.027834	[0.024-0.032] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q24.13	NR	rs28601761-G	0.368171	6E-18				Affymetrix, Illumina [24558453] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	8q24.13	NR	rs28601761-G	0.418549	7E-21		0.017731	[0.014-0.021] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Problematic alcohol use (MTAG)	972,915 European ancestry individuals	NA	8q24.13	NR	rs28601761-G	0.4168	2E-10		0.015814032	[0.011-0.021] unit increase	Affymetrix [10613246] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol consumption (drinks per week) (MTAG)	972,915 European ancestry individuals	NA	8q24.13	NR	rs28601761-G	0.405	6E-11		0.012143825	[0.0085-0.0158] unit increase	Affymetrix [NR] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	8q24.13	TRIB1	rs28601761-C	0.58131	1E-184		0.0619374	[0.058-0.066] unit increase	Affymetrix [NR] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	8q24.13	TRIB1	rs28601761-C	0.581156	1E-253		0.0724469	[0.068-0.077] unit increase	Affymetrix [NR] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	8q24.13	intergenic	rs28601761-?	NR	2E-288		0.0967	[0.092-0.101] unit decrease	Affymetrix [5701386] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	8q24.13	intergenic	rs28601761-?	NR	6E-264		0.0909	[0.086-0.095] unit decrease	Affymetrix [5701386] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	8q24.13	NR	rs28601761-C	0.580115	6E-22		0.0200175	[0.016-0.024] unit increase	NR [NR]	N
1550	chr8	126500030	126500031	rs28601761	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x long total sleep time interaction (2df test)	at least 2,926 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, at least 7,664 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,906 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 31,986 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 317 East Asian ancestry long sleepers, up to 5,171 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 928 African American controls, 1,301 East Asian ancestry controls, up to 20,961 European ancestry controls, 10,064 Hispanic controls	8q24.13	AC091114.1	rs28601761-?	NR	5E-42		0.02757	[0.023-0.032] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	31666285	Olafsson S	2019-10-30	Cancer Epidemiol Biomarkers Prev	Common and rare sequence variants influencing tumor biomarkers in blood.	Serum alkaline phosphatase levels	162,774 Icelandic ancestry individuals	NA	8q24.13	intergenic	rs28601761-G	0.43	4E-15		0.03	[0.04-0.02] unit decrease	Illumina [NR] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	31630189	Casanova F	2019-10-20	Hum Mol Genet	A genome-wide association study implicates multiple mechanisms influencing raised urinary albumin-creatinine ratio.	Urinary albumin-to-creatinine ratio	437,027 European ancestry individuals	60,130 individuals	8q24.13	TRIB1	rs28601761-C	0.58	3E-14	(EA)	0.016	[0.012-0.02] unit increase	NR [12082474] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals, 6,795 African American individuals, 6,324 East Asian ancestry individuals, 2,335 South Asian ancestry individuals, 1,442 Hispanic individuals	NA	8q24.13	TRIB1	rs28601761-C	NR	2E-14		0.0156	[0.012-0.02] unit increase	Affymetrix, Illumina [8034757] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Microalbuminuria	51,861 European, African American, East Asian, South Asian or Hispanic ancestry cases, 297,093 European, African American, East Asian, South Asian or Hispanic ancestry controls	NA	8q24.13	TRIB1	rs28601761-C	NR	4E-8		1.0392507	[1.03-1.05]	Affymetrix, Illumina [8326000] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in non-diabetics	152,624 European ancestry individuals, 36,369 African American individuals	NA	8q24.13	AK022787	rs28601761-C	0.599	1E-8		0.305	[0.2-0.41] unit increase	Affymetrix [NR] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	8q24.13	AK022787	rs28601761-C	0.609	3E-9		0.0019	[0.0013-0.0025] unit increase	Affymetrix [NR] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	8q24.13	AK022787	rs28601761-C	0.5731	3E-10	(EA)	0.0022	[0.0014-0.003] unit increase	Affymetrix [NR] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	31070104	Jia Q	2019-05-09	J Am Heart Assoc	Genetic Determinants of Circulating Glycine Levels and Risk of Coronary Artery Disease.	Glycine levels	30,118 European ancestry individuals	NA	8q24.13	TRIB1	rs28601761-G	0.414553	2E-13		0.06324	[0.046-0.08] unit increase	Affymetrix, Illumina [7487927] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	31070104	Jia Q	2019-05-09	J Am Heart Assoc	Genetic Determinants of Circulating Glycine Levels and Risk of Coronary Artery Disease.	Glycine levels	19,112 European ancestry male individuals	NA	8q24.13	TRIB1	rs28601761-G	0.414553	4E-12		0.073183	[0.052-0.094] unit increase	Affymetrix, Illumina [7487927] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (salicylic acid and derivatives)	61,583 European ancestry cases, 50,427 European ancestry controls	NA	8q24.13	RP11-136O12.2	rs28601761-G	0.415104	1E-13		0.060665794	[0.045-0.077] unit decrease	Affymetrix [7288503] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (antithrombotic agents)	67,653 European ancestry cases, 85,986 European ancestry controls	NA	8q24.13	RP11-136O12.2	rs28601761-G	0.415801	2E-13		0.051481012	[0.038-0.065] unit decrease	Affymetrix [7288503] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	30910378	Zanetti D	2019-03-12	Kidney Int	Identification of 22 novel loci associated with urinary biomarkers of albumin, sodium, and potassium excretion.	Urinary albumin-to-creatinine ratio	218,759 European ancestry individuals	109,530 European ancestry individuals	8q24.13	TRIB1	rs28601761-G	0.4203	1E-8		0.017	[0.011-0.023] unit decrease	Affymetrix [19420026] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	30837465	Wittemans LBL	2019-03-05	Nat Commun	Assessing the causal association of glycine with risk of cardio-metabolic diseases.	Glycine levels	80,003 European ancestry individuals	NA	8q24.13	TRIB1, LINC00861	rs28601761-G	0.416	8E-30		0.063	[0.051-0.075] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	30670697	Kilpelainen TO	2019-01-22	Nat Commun	Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity.	Triglycerides x physical activity interaction (2df test)	7,294 African American inactive individuals, 12,832 African American active individuals, 1,352 Asian ancestry inactive individuals, 3,049 Asian ancestry active individuals, 20,622 European ancestry inactive individuals, 51,480 European ancestry active individuals, 2,166 Hispanic or Latin American inactive individuals, 3,486 Hispanic or Latin American active individuals	580 African American inactive individuals, 1,540 African American active individuals, 1,217 South African Black ancestry inactive individuals, 389 South African Black ancestry active individuals, 765 East Asian ancestry inactive individuals, 1,814 East Asian ancestry active individuals,  724 South Asian ancestry inactive individuals, 1,424 South Asian ancestry active individuals, 32,456 European ancestry inactive individuals, 49,510 European ancestry active individuals, 2,619 Hispanic inactive individuals, 8,803 Hispanic active individuals	8q24.13	NR	rs28601761-C	0.5747	4E-106	(EA)			Affymetrix, Illumina [at least 2500000] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	8q24.13	NR	rs28601761-G	0.42	3E-10		0.00849258	[0.0059-0.0111] unit increase	NR [~ 9732723] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week)	up to 941,280 European ancestry individuals	NA	8q24.13	NR	rs28601761-G	0.42	7E-10		0.009102878	[0.0062-0.012] unit increase	NR [~ 10000000] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	8q24.13		rs28601761-?	NR	6E-92				NR [~ 8900000] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	8q24.13		rs28601761-?	NR	8E-28				NR [~ 8900000] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	8q24.13		rs28601761-?	NR	1E-31				NR [~ 8900000] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	8q24.13		rs28601761-?	NR	7E-26				NR [~ 8900000] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	148,164 European ancestry individuals	NA	8q24.13	TRIB1	rs28601761-C	0.57	2E-11	(BMI-adjusted)	0.026	[0.018-0.034] unit increase	Affymetrix, Illumina, Perlegen [10019203] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	30220432	Haas ME	2018-09-06	Am J Hum Genet	Genetic Association of Albuminuria with Cardiometabolic Disease and Blood Pressure.	Urinary albumin excretion (no hypertensive medication)	302,687 European ancestry individuals without hypertensive medication	NA	8q24.13	TRIB1, LINC00861	rs28601761-C	0.579	3E-9		0.01059	[0.0071-0.0141] unit increase	Affymetrix [11709857] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	30220432	Haas ME	2018-09-06	Am J Hum Genet	Genetic Association of Albuminuria with Cardiometabolic Disease and Blood Pressure.	Urinary albumin excretion	382,500 European ancestry individuals	NA	8q24.13	TRIB1, LINC00861	rs28601761-C	0.579	3E-11		0.01136	[0.008-0.0147] unit increase	Affymetrix [11709857] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	8q24.13	intergenic	rs28601761-C	0.6	5E-20		0.06	[0.046-0.074] unit increase	Affymetrix [7947838] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	28369058	Folkersen L	2017-04-03	PLoS Genet	Mapping of 79 loci for 83 plasma protein biomarkers in cardiovascular disease.	Blood protein levels in cardiovascular risk	3,394 European ancestry individuals	2,639 individuals	8q24.13	intergenic	rs28601761-C	0.61	1E-14		0.14	unit increase	Illumina [5270624] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	8q24.13	RP11-136O12.2	rs28601761-G	0.4184	7E-13		0.02607749	[0.019-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin concentration	172,851 European ancestry individuals	NA	8q24.13	RP11-136O12.2	rs28601761-G	0.4184	9E-22		0.03393033	[0.027-0.041] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1550	chr8	126500030	126500031	rs28601761	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	8q24.13	RP11-136O12.2	rs28601761-G	0.4184	1E-15		0.02902436	[0.022-0.036] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1550	chr8	126500349	126500350	rs8180991	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	8q24.13	RP11-136O12.2	rs8180991-G	0.2396	2E-10		0.016939614	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1550	chr8	126500349	126500350	rs8180991	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	8q24.13	RP11-136O12.2	rs8180991-G	0.239584	4E-10		0.016569795	[0.011-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1550	chr8	126500349	126500350	rs8180991	31097437	Plotnikov D	2019-05-16	Br J Ophthalmol	Association between birth weight and refractive error in adulthood: a Mendelian randomisation study.	Birth weight	188,039 European ancestry individuals	NA	8q24.13	NR	rs8180991-C	0.24	1E-8		0.022	[0.014-0.03] z score increase	Affymetrix [up to 10400000] (imputed)	N
1550	chr8	126500349	126500350	rs8180991	27286809	Ligthart S	2016-06-10	BMC Genomics	Bivariate genome-wide association study identifies novel pleiotropic loci for lipids and inflammation.	C-reactive protein levels or LDL-cholesterol levels (pleiotropy)	65,000 individuals (C-reactive protein), 95,454 individuals (LDL-cholesterol)	NA	8q24.13	TRIB1	rs8180991-C	NR	5E-11				NR [2501749] (imputed)	N
1550	chr8	126501176	126501177	rs2980858	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	8q24.13	NR	rs2980858-C	0.696302	5E-14		0.0099459	[0.0073-0.0126] unit increase	Affymetrix [16585854] (imputed)	N
1550	chr8	126501176	126501177	rs2980858	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	8q24.13	NR	rs2980858-C	0.696302	1E-6		0.00765026	[0.0046-0.0107] unit increase	Affymetrix [16585866] (imputed)	N
1550	chr8	126501527	126501528	rs7846135	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	8q24.13		rs7846135-?	NR	6E-9				NR [~ 8900000] (imputed)	N
1550	chr8	126502302	126502303	rs117673551	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	8q24.13	NR	rs117673551-A	NR	2E-29		0.0759	[0.063-0.089] unit decrease	Affymetrix [9000000] (imputed)	N
1550	chr8	126502302	126502303	rs117673551	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	8q24.13	NR	rs117673551-A	NR	1E-17		0.0576	[0.044-0.071] unit decrease	Affymetrix [9000000] (imputed)	N
1550	chr8	126502302	126502303	rs117673551	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	8q24.13	NR	rs117673551-A	NR	2E-12		0.0472	[0.034-0.06] unit decrease	Affymetrix [9000000] (imputed)	N
1550	chr8	126502302	126502303	rs117673551	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	8q24.13	NR	rs117673551-A	NR	4E-17		0.0566	[0.043-0.07] unit decrease	Affymetrix [9000000] (imputed)	N
1550	chr8	126502302	126502303	rs117673551	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	8q24.13	NR	rs117673551-A	NR	6E-21		0.0633	[0.05-0.076] unit decrease	Affymetrix [9000000] (imputed)	N
1550	chr8	126504370	126504371	rs13252202	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	8q24.13		rs13252202-C	0.780703	8E-10		0.032407	[0.022-0.043] unit decrease	NR [11722792] (imputed)	N
1550	chr8	126504383	126504389	rs10555326	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	8q24.13	RP11-136O12.2	rs10555326-CCACCAT	0.597476	8E-10		0.0353598	[0.031-0.04] unit decrease	Affymetrix [93095623] (imputed)	N
1550	chr8	126504383	126504389	rs10555326	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	8q24.13	RP11-136O12.2	rs10555326-C	0.597445	2E-14		0.018553572	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1550	chr8	126504725	126504726	rs6987702	19060911	Aulchenko YS	2008-12-07	Nat Genet	Loci influencing lipid levels and coronary heart disease risk in 16 European population cohorts.	LDL cholesterol	17,083 European ancestry individuals, 714 Orcadian individuals	NA	8q24.13	TRIB1	rs6987702-G	0.29	3E-6		0.07	[NR] s.d. increase	Affymetrix, Illumina [up to 600000]	N
1550	chr8	126504725	126504726	rs6987702	19060911	Aulchenko YS	2008-12-07	Nat Genet	Loci influencing lipid levels and coronary heart disease risk in 16 European population cohorts.	Cholesterol, total	21,848 European ancestry individuals, 714 Orcadian individuals	NA	8q24.13	TRIB1	rs6987702-G	0.29	3E-9		0.07	[NR] s.d. increase	Affymetrix, Illumina [up to 600000]	N
1550	chr8	126506139	126506140	rs13271368	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	8q24.13	TRIB1	rs13271368-C	0.761334	2E-11		0.020223	[0.014-0.026] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1550	chr8	126506632	126506634	rs374077976	32742401	Parviainen R	2020-06-12	Exp Ther Med	A single genetic locus associated with pediatric fractures: A genome-wide association study on 3,230 patients.	Fractures (paediatric)	48 European ancestry cases, 3,182 European ancestry controls	NA	8q24.13	TRIB1, NSMCE2	rs374077976-C	0.1462	1E-7		1.752	[1.1-2.4] unit increase	Illumina [3515000] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	VLDL cholesterol levels	115,082 European ancestry individuals	NA	8q24.13		rs112875651-G	0.607621	1E-86		0.0843061	[0.076-0.093] unit increase	NR [11722792] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	8q24.13		rs112875651-G	0.607659	4E-85		0.0785584	[0.071-0.086] unit increase	NR [11722792] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	8q24.13		rs112875651-G	0.607631	2E-17		0.0363701	[0.028-0.045] unit decrease	NR [11722792] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium VLDL	115,082 European ancestry individuals	NA	8q24.13		rs112875651-G	0.607621	9E-86		0.0814534	[0.073-0.09] unit increase	NR [11722792] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large LDL	115,082 European ancestry individuals	NA	8q24.13		rs112875651-G	0.607621	2E-116		0.0962092	[0.088-0.104] unit increase	NR [11722792] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in LDL	115,082 European ancestry individuals	NA	8q24.13		rs112875651-G	0.607621	5E-118		0.0967576	[0.089-0.105] unit increase	NR [11722792] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in IDL	115,082 European ancestry individuals	NA	8q24.13		rs112875651-G	0.607621	2E-115		0.0954159	[0.087-0.104] unit increase	NR [11722792] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total phospholipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	8q24.13		rs112875651-G	0.607621	4E-50		0.0606873	[0.053-0.069] unit increase	NR [11722792] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very small VLDL	115,082 European ancestry individuals	NA	8q24.13		rs112875651-G	0.607621	2E-83		0.0811535	[0.073-0.089] unit increase	NR [11722792] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large HDL	115,082 European ancestry individuals	NA	8q24.13		rs112875651-G	0.607621	1E-14		0.0296936	[0.022-0.037] unit decrease	NR [11722792] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small VLDL	115,082 European ancestry individuals	NA	8q24.13		rs112875651-G	0.607621	3E-106		0.092491	[0.084-0.101] unit increase	NR [11722792] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small LDL	115,082 European ancestry individuals	NA	8q24.13		rs112875651-G	0.607621	7E-52		0.0649649	[0.057-0.073] unit increase	NR [11722792] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small HDL	115,082 European ancestry individuals	NA	8q24.13		rs112875651-G	0.607621	1E-42		0.0584135	[0.05-0.067] unit increase	NR [11722792] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium VLDL	115,082 European ancestry individuals	NA	8q24.13		rs112875651-G	0.607621	3E-83		0.0821673	[0.074-0.09] unit increase	NR [11722792] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium LDL	115,082 European ancestry individuals	NA	8q24.13		rs112875651-G	0.607621	1E-58		0.0693202	[0.061-0.078] unit increase	NR [11722792] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	8q24.13		rs112875651-G	0.607621	2E-71		0.0752496	[0.067-0.084] unit increase	NR [11722792] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large LDL	115,082 European ancestry individuals	NA	8q24.13		rs112875651-G	0.607621	2E-37		0.0542615	[0.046-0.063] unit increase	NR [11722792] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	8q24.13		rs112875651-G	0.607621	6E-16		0.0304119	[0.023-0.038] unit decrease	NR [11722792] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in LDL	115,082 European ancestry individuals	NA	8q24.13		rs112875651-G	0.607621	2E-45		0.060415	[0.052-0.069] unit increase	NR [11722792] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in IDL	115,082 European ancestry individuals	NA	8q24.13		rs112875651-G	0.607621	3E-30		0.0473955	[0.039-0.056] unit increase	NR [11722792] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total free cholesterol levels	115,082 European ancestry individuals	NA	8q24.13		rs112875651-G	0.607621	1E-43		0.0580372	[0.05-0.066] unit increase	NR [11722792] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total esterified cholesterol levels	115,082 European ancestry individuals	NA	8q24.13		rs112875651-G	0.607621	1E-26		0.0441561	[0.036-0.052] unit increase	NR [11722792] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total concentration of lipoprotein particles	115,082 European ancestry individuals	NA	8q24.13		rs112875651-G	0.607621	4E-9		0.0237263	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholines levels	115,006 European ancestry individuals	NA	8q24.13		rs112875651-G	0.607663	9E-40		0.0531437	[0.045-0.061] unit increase	NR [11722792] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol minus HDL-C levels	115,082 European ancestry individuals	NA	8q24.13		rs112875651-G	0.607621	4E-49		0.0628425	[0.054-0.071] unit increase	NR [11722792] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol levels	115,082 European ancestry individuals	NA	8q24.13		rs112875651-G	0.607621	2E-31		0.0484154	[0.04-0.057] unit increase	NR [11722792] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Sphingomyelin levels	115,006 European ancestry individuals	NA	8q24.13		rs112875651-G	0.607663	2E-18		0.035169	[0.027-0.043] unit increase	NR [11722792] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Remnant cholesterol (non-HDL, non-LDL -cholesterol)	115,082 European ancestry individuals	NA	8q24.13		rs112875651-G	0.607621	2E-58		0.068676	[0.06-0.077] unit increase	NR [11722792] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to omega-3 fatty acids	115,006 European ancestry individuals	NA	8q24.13		rs112875651-G	0.607663	4E-68		0.0719492	[0.064-0.08] unit decrease	NR [11722792] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-3 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	8q24.13		rs112875651-G	0.607663	3E-36		0.0517835	[0.044-0.06] unit increase	NR [11722792] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of apolipoprotein B to apolipoprotein A1 levels	115,082 European ancestry individuals	NA	8q24.13		rs112875651-G	0.607621	2E-35		0.0524377	[0.044-0.061] unit increase	NR [11722792] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Polyunsaturated fatty acid levels	115,006 European ancestry individuals	NA	8q24.13		rs112875651-G	0.607663	9E-77		0.0771818	[0.069-0.085] unit increase	NR [11722792] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	8q24.13		rs112875651-G	0.607933	2E-20		0.0398195	[0.031-0.048] unit increase	NR [11722792] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	8q24.13		rs112875651-G	0.607659	2E-20		0.0365208	[0.029-0.044] unit decrease	NR [11722792] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	8q24.13		rs112875651-G	0.607742	1E-10		0.0276223	[0.019-0.036] unit increase	NR [11722792] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very small VLDL	115,082 European ancestry individuals	NA	8q24.13		rs112875651-G	0.607621	1E-86		0.0829141	[0.075-0.091] unit increase	NR [11722792] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large HDL	115,082 European ancestry individuals	NA	8q24.13		rs112875651-G	0.607621	3E-16		0.0315469	[0.024-0.039] unit decrease	NR [11722792] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small VLDL	115,082 European ancestry individuals	NA	8q24.13		rs112875651-G	0.607621	1E-86		0.0842711	[0.076-0.093] unit increase	NR [11722792] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small LDL	115,082 European ancestry individuals	NA	8q24.13		rs112875651-G	0.607621	6E-35		0.0527414	[0.044-0.061] unit increase	NR [11722792] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small HDL	115,082 European ancestry individuals	NA	8q24.13		rs112875651-G	0.607621	3E-41		0.0571489	[0.049-0.065] unit increase	NR [11722792] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium VLDL	115,082 European ancestry individuals	NA	8q24.13		rs112875651-G	0.607621	5E-75		0.0783946	[0.07-0.087] unit increase	NR [11722792] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium LDL	115,082 European ancestry individuals	NA	8q24.13		rs112875651-G	0.607621	3E-53		0.0659656	[0.058-0.074] unit increase	NR [11722792] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large LDL	115,082 European ancestry individuals	NA	8q24.13		rs112875651-G	0.607621	9E-34		0.0515504	[0.043-0.06] unit increase	NR [11722792] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large HDL	115,082 European ancestry individuals	NA	8q24.13		rs112875651-G	0.607621	5E-13		0.0272488	[0.02-0.035] unit decrease	NR [11722792] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in VLDL	115,082 European ancestry individuals	NA	8q24.13		rs112875651-G	0.607621	1E-102		0.0907927	[0.083-0.099] unit increase	NR [11722792] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in LDL	115,082 European ancestry individuals	NA	8q24.13		rs112875651-G	0.607621	2E-40		0.0569508	[0.049-0.065] unit increase	NR [11722792] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in IDL	115,082 European ancestry individuals	NA	8q24.13		rs112875651-G	0.607621	1E-33		0.0500565	[0.042-0.058] unit increase	NR [11722792] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphoglycerides levels	115,006 European ancestry individuals	NA	8q24.13		rs112875651-G	0.607663	1E-50		0.0605595	[0.053-0.068] unit increase	NR [11722792] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphatidylcholine levels	115,006 European ancestry individuals	NA	8q24.13		rs112875651-G	0.607663	7E-39		0.0522495	[0.044-0.06] unit increase	NR [11722792] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-6 fatty acid levels	115,006 European ancestry individuals	NA	8q24.13		rs112875651-G	0.607663	4E-52		0.0635591	[0.055-0.072] unit increase	NR [11722792] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-3 fatty acid levels	115,006 European ancestry individuals	NA	8q24.13		rs112875651-G	0.607663	2E-100		0.0874051	[0.079-0.095] unit increase	NR [11722792] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Linoleic acid levels	115,006 European ancestry individuals	NA	8q24.13		rs112875651-G	0.607663	1E-33		0.0508616	[0.043-0.059] unit increase	NR [11722792] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	LDL cholesterol levels	115,082 European ancestry individuals	NA	8q24.13		rs112875651-G	0.607621	5E-38		0.0550911	[0.047-0.063] unit increase	NR [11722792] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycoprotein acetyls levels	115,082 European ancestry individuals	NA	8q24.13		rs112875651-G	0.607621	5E-63		0.0710206	[0.063-0.079] unit increase	NR [11722792] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	8q24.13		rs112875651-G	0.607659	3E-11		0.0251701	[0.018-0.033] unit increase	NR [11722792] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	8q24.13		rs112875651-G	0.607631	6E-24		0.0428429	[0.035-0.051] unit increase	NR [11722792] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	8q24.13		rs112875651-G	0.607621	7E-69		0.0735777	[0.065-0.082] unit increase	NR [11722792] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	8q24.13		rs112875651-G	0.607621	3E-14		0.0303318	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	8q24.13		rs112875651-G	0.607621	2E-64		0.0726765	[0.064-0.081] unit increase	NR [11722792] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small LDL	115,082 European ancestry individuals	NA	8q24.13		rs112875651-G	0.607621	4E-12		0.0296805	[0.021-0.038] unit increase	NR [11722792] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small HDL	115,082 European ancestry individuals	NA	8q24.13		rs112875651-G	0.607621	5E-46		0.0598217	[0.052-0.068] unit increase	NR [11722792] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	8q24.13		rs112875651-G	0.607621	7E-63		0.0717052	[0.063-0.08] unit increase	NR [11722792] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	8q24.13		rs112875651-G	0.607621	5E-23		0.0423361	[0.034-0.051] unit increase	NR [11722792] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large LDL	115,082 European ancestry individuals	NA	8q24.13		rs112875651-G	0.607621	1E-15		0.0336399	[0.025-0.042] unit increase	NR [11722792] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	8q24.13		rs112875651-G	0.607621	9E-15		0.0290893	[0.022-0.036] unit decrease	NR [11722792] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in VLDL	115,082 European ancestry individuals	NA	8q24.13		rs112875651-G	0.607621	6E-96		0.0882199	[0.08-0.097] unit increase	NR [11722792] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in LDL	115,082 European ancestry individuals	NA	8q24.13		rs112875651-G	0.607621	3E-17		0.0358116	[0.027-0.044] unit increase	NR [11722792] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in IDL	115,082 European ancestry individuals	NA	8q24.13		rs112875651-G	0.607621	6E-17		0.0347058	[0.027-0.043] unit increase	NR [11722792] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Docosahexaenoic acid levels	115,006 European ancestry individuals	NA	8q24.13		rs112875651-G	0.607663	1E-33		0.0492908	[0.041-0.057] unit increase	NR [11722792] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very small VLDL particles	115,082 European ancestry individuals	NA	8q24.13		rs112875651-G	0.607621	2E-80		0.0799727	[0.072-0.088] unit increase	NR [11722792] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small VLDL particles	115,082 European ancestry individuals	NA	8q24.13		rs112875651-G	0.607621	9E-106		0.0919369	[0.084-0.1] unit increase	NR [11722792] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small LDL particles	115,082 European ancestry individuals	NA	8q24.13		rs112875651-G	0.607621	2E-63		0.0721354	[0.064-0.081] unit increase	NR [11722792] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small HDL particles	115,082 European ancestry individuals	NA	8q24.13		rs112875651-G	0.607621	1E-26		0.0458052	[0.037-0.054] unit increase	NR [11722792] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium VLDL particles	115,082 European ancestry individuals	NA	8q24.13		rs112875651-G	0.607621	8E-75		0.0781734	[0.07-0.087] unit increase	NR [11722792] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium LDL particles	115,082 European ancestry individuals	NA	8q24.13		rs112875651-G	0.607621	2E-57		0.0687305	[0.06-0.077] unit increase	NR [11722792] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large LDL particles	115,082 European ancestry individuals	NA	8q24.13		rs112875651-G	0.607621	4E-41		0.0573743	[0.049-0.066] unit increase	NR [11722792] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	8q24.13		rs112875651-G	0.607621	2E-15		0.0299438	[0.023-0.037] unit decrease	NR [11722792] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of VLDL particles	115,082 European ancestry individuals	NA	8q24.13		rs112875651-G	0.607621	2E-100		0.090422	[0.082-0.099] unit increase	NR [11722792] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of LDL particles	115,082 European ancestry individuals	NA	8q24.13		rs112875651-G	0.607621	2E-50		0.0639493	[0.056-0.072] unit increase	NR [11722792] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of IDL particles	115,082 European ancestry individuals	NA	8q24.13		rs112875651-G	0.607621	4E-34		0.0516843	[0.043-0.06] unit increase	NR [11722792] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Clinical LDL cholesterol levels	115,082 European ancestry individuals	NA	8q24.13		rs112875651-G	0.607621	8E-29		0.0474956	[0.039-0.056] unit increase	NR [11722792] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very small VLDL	115,082 European ancestry individuals	NA	8q24.13		rs112875651-G	0.607621	4E-36		0.0518719	[0.044-0.06] unit increase	NR [11722792] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large VLDL	115,082 European ancestry individuals	NA	8q24.13		rs112875651-G	0.607621	7E-92		0.0856438	[0.077-0.094] unit increase	NR [11722792] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small VLDL	115,082 European ancestry individuals	NA	8q24.13		rs112875651-G	0.607621	5E-88		0.0849483	[0.077-0.093] unit increase	NR [11722792] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small LDL	115,082 European ancestry individuals	NA	8q24.13		rs112875651-G	0.607621	3E-62		0.0714506	[0.063-0.08] unit increase	NR [11722792] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small HDL	115,082 European ancestry individuals	NA	8q24.13		rs112875651-G	0.607621	2E-9		0.0257894	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium VLDL	115,082 European ancestry individuals	NA	8q24.13		rs112875651-G	0.607621	1E-19		0.0385541	[0.03-0.047] unit increase	NR [11722792] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium LDL	115,082 European ancestry individuals	NA	8q24.13		rs112875651-G	0.607621	4E-63		0.0720187	[0.064-0.08] unit increase	NR [11722792] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large VLDL	115,082 European ancestry individuals	NA	8q24.13		rs112875651-G	0.607621	7E-88		0.0839796	[0.076-0.092] unit increase	NR [11722792] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large LDL	115,082 European ancestry individuals	NA	8q24.13		rs112875651-G	0.607621	3E-36		0.053443	[0.045-0.062] unit increase	NR [11722792] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	8q24.13		rs112875651-G	0.607621	3E-31		0.0439716	[0.037-0.051] unit decrease	NR [11722792] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in VLDL	115,082 European ancestry individuals	NA	8q24.13		rs112875651-G	0.607621	6E-76		0.0790075	[0.071-0.087] unit increase	NR [11722792] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in LDL	115,082 European ancestry individuals	NA	8q24.13		rs112875651-G	0.607621	7E-47		0.0615204	[0.053-0.07] unit increase	NR [11722792] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in IDL	115,082 European ancestry individuals	NA	8q24.13		rs112875651-G	0.607621	4E-19		0.0370756	[0.029-0.045] unit increase	NR [11722792] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	8q24.13		rs112875651-G	0.607621	9E-46		0.0590205	[0.051-0.067] unit increase	NR [11722792] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	8q24.13		rs112875651-G	0.607621	3E-80		0.0812076	[0.073-0.09] unit increase	NR [11722792] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small LDL	115,082 European ancestry individuals	NA	8q24.13		rs112875651-G	0.607621	6E-47		0.0617649	[0.053-0.07] unit increase	NR [11722792] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small HDL	115,082 European ancestry individuals	NA	8q24.13		rs112875651-G	0.607621	5E-17		0.0359745	[0.028-0.044] unit increase	NR [11722792] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	8q24.13		rs112875651-G	0.607621	2E-37		0.0546136	[0.046-0.063] unit increase	NR [11722792] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	8q24.13		rs112875651-G	0.607621	3E-52		0.0653625	[0.057-0.074] unit increase	NR [11722792] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	8q24.13		rs112875651-G	0.607621	7E-94		0.0859322	[0.078-0.094] unit increase	NR [11722792] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large LDL	115,082 European ancestry individuals	NA	8q24.13		rs112875651-G	0.607621	4E-30		0.0483969	[0.04-0.057] unit increase	NR [11722792] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	8q24.13		rs112875651-G	0.607621	6E-27		0.0405465	[0.033-0.048] unit decrease	NR [11722792] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in IDL	115,082 European ancestry individuals	NA	8q24.13		rs112875651-G	0.607621	8E-19		0.0367058	[0.029-0.045] unit increase	NR [11722792] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	8q24.13		rs112875651-G	0.607621	3E-19		0.0339959	[0.027-0.041] unit decrease	NR [11722792] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein B levels	115,082 European ancestry individuals	NA	8q24.13		rs112875651-G	0.607621	6E-55		0.0668373	[0.058-0.075] unit increase	NR [11722792] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total lipids in small VLDL	4,734 individuals	NA	8q24.13		rs112875651-A	0.41	6E-8		0.11	[0.071-0.149] mmol/l decrease	Illumina [7701709] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total cholesterol in small VLDL	4,734 individuals	NA	8q24.13		rs112875651-A	0.413434525	2E-8		0.119751	[0.078-0.161] mmol/l decrease	Illumina [7701709] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total cholesterol in VLDL	4,734 individuals	NA	8q24.13		rs112875651-A	0.413343895	5E-8		0.115763	[0.074-0.157] mmol/l decrease	Illumina [7701709] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting phospholipid levels in small VLDL	4,734 individuals	NA	8q24.13		rs112875651-A	0.413434525	3E-8		0.118103	[0.077-0.16] mmol/l decrease	Illumina [7701709] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting free cholesterol in small VLDL	4,734 individuals	NA	8q24.13		rs112875651-A	0.413434525	2E-8		0.119596	[0.078-0.161] mmol/l decrease	Illumina [7701709] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting cholesterol esters in small VLDL	4,734 individuals	NA	8q24.13		rs112875651-A	0.41	6E-8		0.12	[0.081-0.159] mmol/l decrease	Illumina [7701709] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting cholesterol esters in medium VLDL	4,734 individuals	NA	8q24.13		rs112875651-A	0.413586681	5E-8		0.115764	[0.074-0.157] mmol/l decrease	Illumina [7701709] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting apolipoprotein B	4,734 individuals	NA	8q24.13		rs112875651-A	0.413343895	2E-8		0.118333	[0.077-0.16] mmol/l decrease	Illumina [7701709] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	8q24.13		rs112875651-A	NR	2E-20		0.017	[0.013-0.021] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	8q24.13		rs112875651-A	NR	7E-21		0.0205	[0.016-0.025] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	8q24.13		rs112875651-A	NR	2E-9		0.0126	[0.0085-0.0167] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Percent liver fat	32,858 European ancestry individuals	NA	8q24.13	TRIB1	rs112875651-?	NR	9E-11		0.0514	NR % decrease	Affymetrix [9390170] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	8q24.13	RP11-136O12.2	rs112875651-A	0.391568	6E-25		0.023618659	[0.019-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	8q24.13	RP11-136O12.2	rs112875651-A	0.391412	9E-21		0.021839174	[0.017-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	8q24.13	RP11-136O12.2	rs112875651-A	0.391572	2E-12		0.0159437	[0.012-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	8q24.13	RP11-136O12.2	rs112875651-A	0.391577	2E-14		0.0341073	[0.03-0.039] unit decrease	Affymetrix [93095623] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	8q24.13	RP11-136O12.2	rs112875651-A	0.391536	3E-34		0.02794779	[0.023-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	8q24.13	RP11-136O12.2	rs112875651-A	0.391575	9E-29		0.025710845	[0.021-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	8q24.13	NR	rs112875651-A	0.391915	1E-59		0.033829	[0.03-0.038] SD unit decrease	Affymetrix, Illumina [50282193] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		8q24.13	TRIB1	rs112875651-G	0.608886	4E-9		0.00835363	[0.0056-0.0111] unit decrease	Affymetrix [12370749]	N
1550	chr8	126506693	126506694	rs112875651	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x long total sleep time interaction (2df test)	2,913 African American long sleepers, 358 Chinese ancestry long sleepers, 110 Asian ancestry long sleepers, 7,583 European ancestry long sleepers, 1,036 Hispanic/Latino long sleepers, up to 11,862 African American controls, 1,432 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,744 European ancestry controls, 4,066 Hispanic/Latino controls	at least 214 African American long sleepers, 616 East Asian ancestry long sleepers, up to 6,657 European ancestry long sleepers, 2,457 Hispanic long sleepers, at least 913 African American controls, 2,517 East Asian ancestry controls, up to 26,868 European ancestry controls, 9,870 Hispanic controls	8q24.13	AC091114.1	rs112875651-?	NR	5E-29		2.059	[1.69-2.42] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	8q24.13	NR	rs112875651-?	NR	3E-9		0.02771833	[0.019-0.037] unit decrease	Illumina [31978265] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	8q24.13		rs112875651-?	NR	2E-19				NR [~ 8900000] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q24.13	NR	rs112875651-G	NR	7E-92		0.084	unit increase	Affymetrix [at least 7091467] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q24.13	NR	rs112875651-G	0.689	2E-8	(Hispanic)	0.083	unit increase	Affymetrix [at least 7091467] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q24.13	NR	rs112875651-G	0.62	3E-91	(EA)	0.09	unit increase	Affymetrix [at least 7091467] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q24.13	NR	rs112875651-G	NR	5E-63		0.077	unit increase	Affymetrix [at least 7091467] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q24.13	NR	rs112875651-G	0.689	2E-6	(Hispanic)	0.078	unit increase	Affymetrix [at least 7091467] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q24.13	NR	rs112875651-G	0.62	2E-57	(EA)	0.08	unit increase	Affymetrix [at least 7091467] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q24.13	NR	rs112875651-G	NR	2E-41		0.063	unit increase	Affymetrix [at least 7091467] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q24.13	NR	rs112875651-G	0.62	8E-38	(EA)	0.066	unit increase	Affymetrix [at least 7091467] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q24.13	NR	rs112875651-G	NR	8E-17		0.031	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q24.13	NR	rs112875651-G	0.62	8E-19	(EA)	0.036	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	8q24.13	RP11-136O12.2	rs112875651-A	0.3925	2E-24		0.03782324	[0.031-0.045] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	8q24.13	RP11-136O12.2	rs112875651-A	0.3925	4E-17		0.03120159	[0.024-0.038] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	8q24.13	RP11-136O12.2	rs112875651-A	0.3925	1E-11		0.02517532	[0.018-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	8q24.13	TRIB1, LOC100130231	rs112875651-G		2E-8		0.226	unit increase	Affymetrix [at least 2696785] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	8q24.13	TRIB1, LOC100130231	rs112875651-G		8E-6		0.11	unit increase	Affymetrix [at least 2696785] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	LDL cholesterol	up 62,166 European ancestry individuals	NA	8q24.13	TRIB1	rs112875651-G	0.6	4E-26		0.066	[0.054-0.078] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
1550	chr8	126506693	126506694	rs112875651	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	Cholesterol, total	up to 62,166 European ancestry individuals	NA	8q24.13	TRIB1	rs112875651-G	0.6	1E-38		0.08	[0.068-0.092] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
1550	chr8	126507307	126507308	rs2980888	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	8q24.13		rs2980888-T	0.301149	8E-54		0.0668609	[0.058-0.075] unit increase	NR [11722792] (imputed)	N
1550	chr8	126507307	126507308	rs2980888	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	8q24.13		rs2980888-T	0.301149	6E-35		0.0543834	[0.046-0.063] unit increase	NR [11722792] (imputed)	N
1550	chr8	126507307	126507308	rs2980888	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	8q24.13		rs2980888-T	0.301149	4E-40		0.0579857	[0.049-0.067] unit increase	NR [11722792] (imputed)	N
1550	chr8	126507307	126507308	rs2980888	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	8q24.13		rs2980888-T	0.301149	2E-41		0.0582187	[0.05-0.067] unit increase	NR [11722792] (imputed)	N
1550	chr8	126507307	126507308	rs2980888	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of saturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	8q24.13		rs2980888-T	0.301178	1E-30		0.0511102	[0.042-0.06] unit increase	NR [11722792] (imputed)	N
1550	chr8	126507307	126507308	rs2980888	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	8q24.13		rs2980888-T	0.301149	2E-53		0.0676927	[0.059-0.076] unit decrease	NR [11722792] (imputed)	N
1550	chr8	126507307	126507308	rs2980888	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in IDL	115,082 European ancestry individuals	NA	8q24.13		rs2980888-T	0.301149	2E-23		0.0436593	[0.035-0.052] unit decrease	NR [11722792] (imputed)	N
1550	chr8	126507307	126507308	rs2980888	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	8q24.13		rs2980888-T	0.301182	5E-13		0.0309541	[0.023-0.039] unit decrease	NR [11722792] (imputed)	N
1550	chr8	126507307	126507308	rs2980888	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	8q24.13		rs2980888-T	0.301149	9E-50		0.0655919	[0.057-0.074] unit decrease	NR [11722792] (imputed)	N
1550	chr8	126507307	126507308	rs2980888	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	8q24.13		rs2980888-C	NR	1E-19		0.0169	[0.013-0.021] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
1550	chr8	126507307	126507308	rs2980888	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	8q24.13		rs2980888-C	NR	5E-29		0.0232	[0.019-0.027] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
1550	chr8	126507307	126507308	rs2980888	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	8q24.13	RP11-136O12.2	rs2980888-T	NR	1E-14		0.0237508	[0.018-0.03] unit increase	Affymetrix [319769] (imputed)	N
1550	chr8	126507307	126507308	rs2980888	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	8q24.13	RP11-136O12.2	rs2980888-T	NR	1E-14		0.0238611	[0.018-0.03] unit increase	Affymetrix [319769] (imputed)	N
1550	chr8	126507307	126507308	rs2980888	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8q24.13	RP11-136O12.2	rs2980888-T	NR	8E-10		0.0191017	[0.013-0.025] unit increase	Affymetrix [321114] (imputed)	N
1550	chr8	126507307	126507308	rs2980888	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	8q24.13	RP11-136O12.2	rs2980888-T	NR	3E-9		0.0185632	[0.012-0.025] unit increase	Affymetrix [321169] (imputed)	N
1550	chr8	126507307	126507308	rs2980888	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Triglycerides	429,011 European ancestry individuals	NA	8q24.13		rs2980888-C	0.7	1E-367		0.085	mmol/L decrease	NR [NR] (imputed)	N
1550	chr8	126507307	126507308	rs2980888	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	8q24.13		rs2980888-C	0.7	4E-242				NR [NR] (imputed)	N
1550	chr8	126507307	126507308	rs2980888	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	High density lipoprotein cholesterol levels	392,965 European ancestry individuals	NA	8q24.13		rs2980888-C	0.7	3E-85		0.038	mmol/L increase	NR [NR] (imputed)	N
1550	chr8	126507307	126507308	rs2980888	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	8q24.13		rs2980888-C	0.7	4E-14		0.012	% increase	NR [NR] (imputed)	N
1550	chr8	126507307	126507308	rs2980888	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Aspartate aminotransferase levels	424,778 European ancestry individuals	NA	8q24.13		rs2980888-C	0.7	2E-28		0.024	U/L decrease	NR [NR] (imputed)	N
1550	chr8	126507307	126507308	rs2980888	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Alanine aminotransferase levels	429,203 European ancestry individuals	NA	8q24.13		rs2980888-C	0.7	4E-70		0.038	U/L decrease	NR [NR] (imputed)	N
1550	chr8	126507307	126507308	rs2980888	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Stem cell factor levels	21,758 European ancestry individuals	9,173 individuals	8q24.13		rs2980888-T	0.3	9E-16		0.0741	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1550	chr8	126507307	126507308	rs2980888	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q24.13	NR	rs2980888-C	0.701446	7E-12				Affymetrix, Illumina [23472807] (imputed)	N
1550	chr8	126507307	126507308	rs2980888	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	8q24.13	NR	rs2980888-C	0.697079	1E-13		0.01534	[0.011-0.019] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1550	chr8	126507307	126507308	rs2980888	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x short total sleep time interaction (2df test)	2,990 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,300 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, at least 11,842 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,350 European ancestry controls, 4,047 Hispanic/Latino controls	at least 220 African American short sleepers, 326 East Asian ancestry short sleepers, up to 5,288 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 1,292 East Asian ancestry controls, up to 20,844 European ancestry controls, 10,062 Hispanic controls	8q24.13	AC091114.1	rs2980888-?	NR	4E-40		0.02836	[0.024-0.033] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1550	chr8	126507307	126507308	rs2980888	31589552	Lind L	2019-10-07	Metab Syndr Relat Disord	Genome-Wide Association Study of the Metabolic Syndrome in UK Biobank.	Metabolic syndrome	291,107 European ancestry individuals	NA	8q24.13	TRIB1	rs2980888-T	0.299847	4E-42		0.0959522	[0.082-0.11] unit increase	Affymetrix [9463307] (imputed)	N
1550	chr8	126507307	126507308	rs2980888	31311600	Namjou B	2019-07-17	BMC Med	GWAS and enrichment analyses of non-alcoholic fatty liver disease identify new trait-associated genes and pathways across eMERGE Network.	Nonalcoholic fatty liver disease	1,106 European ancestry cases, 8,571 European ancestry controls	NA	8q24.13	TRIB1	rs2980888-T	0.311977	6E-7		1.35507	[1.20268-1.52677]	NR [7263501] (imputed)	N
1550	chr8	126507307	126507308	rs2980888	30718733	Moon S	2019-02-04	Sci Rep	The Korea Biobank Array: Design and Identification of Coding Variants Associated with Blood Biochemical Traits.	Triglyceride levels	6,949 Korean ancestry individuals	6,000 Korean ancestry individuals	8q24.13	Intergenic	rs2980888-T	0.285	5E-8		0.0506	[NR] unit increase	Affymetrix [at least 805769] (imputed)	N
1550	chr8	126507388	126507389	rs2954038	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	8q24.13		rs2954038-C	0.301324	5E-35		0.0524635	[0.044-0.061] unit increase	NR [11722792] (imputed)	N
1550	chr8	126507388	126507389	rs2954038	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	8q24.13		rs2954038-C	0.301388	1E-14		0.0336625	[0.025-0.042] unit decrease	NR [11722792] (imputed)	N
1550	chr8	126507388	126507389	rs2954038	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	8q24.13		rs2954038-C	0.301324	2E-25		0.0466259	[0.038-0.055] unit decrease	NR [11722792] (imputed)	N
1550	chr8	126507388	126507389	rs2954038	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	8q24.13		rs2954038-C	0.301324	8E-32		0.051267	[0.043-0.06] unit decrease	NR [11722792] (imputed)	N
1550	chr8	126507388	126507389	rs2954038	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	153,512 East Asian ancestry individuals	NA	8q24.13		rs2954038-A	0.696298	4E-9		0.0199028	[0.013-0.027] unit increase	Illumina [13479135] (imputed)	N
1550	chr8	126507388	126507389	rs2954038	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	8q24.13		rs2954038-A	NR	2E-15		0.0143	[0.011-0.018] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
1550	chr8	126507388	126507389	rs2954038	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	8q24.13	NR	rs2954038-A	NR	1E-285		0.0941	[0.089-0.099] unit decrease	Affymetrix [9000000] (imputed)	N
1550	chr8	126507388	126507389	rs2954038	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	8q24.13	NR	rs2954038-A	NR	2E-154		0.069	[0.064-0.074] unit decrease	Affymetrix [9000000] (imputed)	N
1550	chr8	126507388	126507389	rs2954038	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	8q24.13	NR	rs2954038-A	NR	5E-84		0.0507	[0.046-0.056] unit decrease	Affymetrix [9000000] (imputed)	N
1550	chr8	126507388	126507389	rs2954038	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	8q24.13	NR	rs2954038-A	NR	1E-165		0.0716	[0.067-0.077] unit decrease	Affymetrix [9000000] (imputed)	N
1550	chr8	126507388	126507389	rs2954038	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	8q24.13	NR	rs2954038-A	NR	1E-52		0.0416	[0.036-0.047] unit increase	Affymetrix [9000000] (imputed)	N
1550	chr8	126507388	126507389	rs2954038	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	8q24.13	NR	rs2954038-A	NR	2E-9		0.016	[0.011-0.021] unit increase	Affymetrix [9000000] (imputed)	N
1550	chr8	126507388	126507389	rs2954038	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	8q24.13	NR	rs2954038-A	NR	1E-31		0.0305	[0.025-0.036] unit decrease	Affymetrix [9000000] (imputed)	N
1550	chr8	126507388	126507389	rs2954038	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	8q24.13	NR	rs2954038-A	NR	2E-22		0.0254	[0.02-0.03] unit decrease	Affymetrix [9000000] (imputed)	N
1550	chr8	126507388	126507389	rs2954038	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	8q24.13	NR	rs2954038-A	NR	4E-11		0.0187	[0.013-0.024] unit increase	Affymetrix [9000000] (imputed)	N
1550	chr8	126507388	126507389	rs2954038	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	8q24.13	NR	rs2954038-A	NR	2E-23		0.026	[0.021-0.031] unit increase	Affymetrix [9000000] (imputed)	N
1550	chr8	126507388	126507389	rs2954038	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	8q24.13	NR	rs2954038-A	NR	7E-55		0.0408	[0.036-0.046] unit increase	Affymetrix [9000000] (imputed)	N
1550	chr8	126507388	126507389	rs2954038	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	8q24.13	NR	rs2954038-A	NR	2E-24		0.0266	[0.022-0.032] unit decrease	Affymetrix [9000000] (imputed)	N
1550	chr8	126507388	126507389	rs2954038	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	8q24.13	NR	rs2954038-A	NR	2E-208		0.0805	[0.075-0.086] unit decrease	Affymetrix [9000000] (imputed)	N
1550	chr8	126507388	126507389	rs2954038	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	8q24.13	NR	rs2954038-A	NR	9E-65		0.0443	[0.039-0.049] unit decrease	Affymetrix [9000000] (imputed)	N
1550	chr8	126507388	126507389	rs2954038	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Alanine transaminase levels in high alcohol intake	34,238 British ancestry individuals	NA	8q24.13		rs2954038-?	0.2998	4E-20		0.01424	unit increase	NR [6200000] (imputed)	N
1550	chr8	126507388	126507389	rs2954038	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	8q24.13	RP11-136O12.2	rs2954038-A	0.7181	7E-148		0.0776	[0.072-0.083] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1550	chr8	126507388	126507389	rs2954038	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	8q24.13	RP11-136O12.2	rs2954038-A	0.7182	1E-41		0.041	[0.035-0.047] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1550	chr8	126507388	126507389	rs2954038	20339536	Barber MJ	2010-03-22	PLoS One	Genome-wide association of lipid-lowering response to statins in combined study populations.	Response to statin therapy	3,928 European ancestry individuals	NA	8q24.13	NSMCE2, KIAA0196, TRIB1	rs2954038-C	0.32	7E-6	(Triglyceride, sum)			Illumina [~ 2500000] (imputed)	N
1550	chr8	126508745	126508746	rs6989280	27680694	Horikoshi M	2016-10-13	Nature	Genome-wide associations for birth weight and correlations with adult disease.	Birth weight	133,903 European ancestry individuals, 6,635 African American individuals, 420 Turkish ancestry individuals, 365 Moroccan ancestry individuals, 395 Surinamese ancestry individuals, 840 Chinese ancestry individuals.	9,799 European ancestry individuals, 1,449 Filipino ancestry individuals.	8q24.13	TRIB1	rs6989280-G	0.7	5E-8		0.0221	[0.014-0.03] unit increase	Affymetrix, Illumina [at least 22434434] (imputed)	N
1550	chr8	126509050	126509051	rs6993155	31666285	Olafsson S	2019-10-30	Cancer Epidemiol Biomarkers Prev	Common and rare sequence variants influencing tumor biomarkers in blood.	Serum alkaline phosphatase levels	162,774 Icelandic ancestry individuals	NA	8q24.13	intergenic	rs6993155-G	0.044	1E-8		0.06	[0.08-0.04] unit decrease	Illumina [NR] (imputed)	N
1550	chr8	126510337	126510338	rs6470361	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	8q24.13	NR	rs6470361-G	NR	3E-11		0.0177	[0.012-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
1550	chr8	126510337	126510338	rs6470361	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	8q24.13		rs6470361-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1550	chr8	126511216	126511217	rs10712836	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	8q24.13	RP11-136O12.2	rs10712836-G	0.298896	4E-10		0.015389151	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1550	chr8	126511216	126511217	rs10712836	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	8q24.13	intergenic	rs10712836-GA	0.3274	1E-9		0.2318	[0.16-0.31] mmHg increase	Affymetrix [NR] (imputed)	N
1550	chr8	126514538	126514539	rs17419403	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	8q24.13	NR	rs17419403-G	NR	5E-14		0.0527	[0.039-0.066] unit increase	Affymetrix [9000000] (imputed)	N
1550	chr8	126514675	126514676	rs7012891	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Aspartate aminotransferase levels	386,570 British ancestry individuals, 10,617 Asian or Asian British individuals, 7,426 Black or Black British individuals, 2,321 Chinese ancestry individuals	NA	8q24.13	TRIB1	rs7012891-?	NR	9E-9		0.0023	[0.0017-0.0029] unit increase	Affymetrix [21347608] (imputed)	N
1550	chr8	126514675	126514676	rs7012891	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Alanine aminotransferase levels	387,859 British ancestry individuals, 10,635 Asian or Asian British individuals, 7,468 Black or Black British individuals, 2,338 Chinese ancestry individuals	NA	8q24.13	TRIB1	rs7012891-?	NR	5E-18		0.0055	[0.0045-0.0065] unit increase	Affymetrix [21347608] (imputed)	N
1550	chr8	126514675	126514676	rs7012891	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	8q24.13	RP11-136O12.2	rs7012891-C	NR	3E-19		0.0298407	[0.023-0.036] unit increase	Affymetrix [319769] (imputed)	N
1550	chr8	126514675	126514676	rs7012891	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	8q24.13	RP11-136O12.2	rs7012891-C	NR	3E-19		0.0298869	[0.023-0.036] unit increase	Affymetrix [319769] (imputed)	N
1550	chr8	126514675	126514676	rs7012891	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8q24.13	RP11-136O12.2	rs7012891-C	NR	5E-14		0.0253566	[0.019-0.032] unit increase	Affymetrix [321114] (imputed)	N
1550	chr8	126516196	126516197	rs7832357	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	8q24.13	RP11-136O12.2	rs7832357-G	0.341506	3E-11		0.015550223	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1550	chr8	126516196	126516197	rs7832357	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q24.13	NR	rs7832357-G	0.425545	7E-12				Affymetrix, Illumina [19905671] (imputed)	N
1550	chr8	126516196	126516197	rs7832357	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	8q24.13	NR	rs7832357-G	0.342269	9E-13		0.015431	[0.011-0.02] SD unit decrease	Affymetrix, Illumina [50036608] (imputed)	N
1550	chr8	126518026	126518027	rs4604455	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	8q24.13		rs4604455-?	NR	2E-13		0.00708248	[0.0052-0.009] unit decrease	NR [NR]	N
1550	chr8	126521464	126521465	rs12114418	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	8q24.13	RP11-136O12.2	rs12114418-G	NR	3E-16		0.027764	[0.021-0.034] unit increase	Affymetrix [321169] (imputed)	N
1550	chr8	126523522	126523523	rs4360309	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x short total sleep time interaction (2df test)	2,974 African American short sleepers, 365 Chinese ancestry short sleepers, 110 Asian ancestry short sleepers, at least 8,230 European ancestry short sleepers, 1,079 Hispanic/Latino short sleepers, 11,801 African American controls, 1,425 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,097 European ancestry controls, 4,023 Hispanic/Latino controls	at least 214 African American short sleepers, 629 East Asian ancestry short sleepers, up to 6,761 European ancestry short sleepers, 2,473 Hispanic short sleepers, at least 913 African American controls, 2,504 East Asian ancestry controls, up to 26,764 European ancestry controls, 9,854 Hispanic controls	8q24.13	AC091114.1	rs4360309-?	NR	2E-10		1.216	[0.83-1.61] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1550	chr8	126523522	126523523	rs4360309	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q24.13	NR	rs4360309-C	NR	2E-20		0.038	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1550	chr8	126523522	126523523	rs4360309	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q24.13	NR	rs4360309-C	0.485	2E-18	(EA)	0.038	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1550	chr8	126523522	126523523	rs4360309	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q24.13	NR	rs4360309-C	NR	1E-14		0.035	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1550	chr8	126523522	126523523	rs4360309	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q24.13	NR	rs4360309-C	0.485	7E-14	(EA)	0.036	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1550	chr8	126523522	126523523	rs4360309	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q24.13	NR	rs4360309-C	NR	4E-10		0.029	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1550	chr8	126523522	126523523	rs4360309	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q24.13	NR	rs4360309-C	0.485	5E-10	(EA)	0.031	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1550	chr8	126523522	126523523	rs4360309	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of white cells	171,996 European ancestry individuals	NA	8q24.13	RP11-136O12.2	rs4360309-T	0.4888	1E-10		0.02297412	[0.016-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1550	chr8	126523522	126523523	rs4360309	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of granulocytes	170,223 European ancestry individuals	NA	8q24.13	RP11-136O12.2	rs4360309-T	0.4887	2E-9		0.02162174	[0.015-0.029] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1550	chr8	126523522	126523523	rs4360309	24886709	Ko A	2014-06-02	Nat Commun	Amerindian-specific regions under positive selection harbour new lipid variants in Latinos.	Triglycerides	1,678 Mexican ancestry high triglyceride cases, 1,645 Mexican ancestry low triglyceride controls	2,129 Mexican ancestry high triglyceride cases, 2,985 Mexican ancestry low triglyceride controls, 903 Mexican ancestry individuals from 73 dyslipidemic families	8q24.13	LINC00861, TRIB1	rs4360309-T	NR	7E-9		1.35	[1.19-1.53]	Illumina [1661241] (imputed)	N
1550	chr8	126525928	126525929	rs6470363	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	8q24.13	RP11-136O12.2	rs6470363-T	NR	3E-12		0.0236307	[0.017-0.03] unit increase	Affymetrix [319769] (imputed)	N
1550	chr8	126525928	126525929	rs6470363	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	8q24.13	RP11-136O12.2	rs6470363-T	NR	4E-12		0.0235593	[0.017-0.03] unit increase	Affymetrix [319769] (imputed)	N
1550	chr8	126525928	126525929	rs6470363	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	8q24.13	RP11-136O12.2	rs6470363-T	NR	6E-12		0.0235576	[0.017-0.03] unit increase	Affymetrix [321169] (imputed)	N
1550	chr8	126526058	126526059	rs6470364	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8q24.13	RP11-136O12.2	rs6470364-A	NR	3E-10		0.0212923	[0.015-0.028] unit increase	Affymetrix [321114] (imputed)	N
1550	chr8	126528721	126528722	rs78309295	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	8q24.13	NR	rs78309295-G	NR	6E-19		0.0724	[0.057-0.088] unit increase	Affymetrix [9000000] (imputed)	N
1550	chr8	126528721	126528722	rs78309295	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	8q24.13	NR	rs78309295-G	NR	3E-9		0.0482	[0.032-0.064] unit increase	Affymetrix [9000000] (imputed)	N
1550	chr8	126528721	126528722	rs78309295	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	8q24.13	NR	rs78309295-G	NR	1E-10		0.0522	[0.036-0.068] unit increase	Affymetrix [9000000] (imputed)	N
1550	chr8	126528721	126528722	rs78309295	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	8q24.13	NR	rs78309295-G	NR	3E-13		0.0596	[0.044-0.075] unit increase	Affymetrix [9000000] (imputed)	N
1550	chr8	126528721	126528722	rs78309295	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (negative Marder score)	1,390 European ancestry cases	NA	8q24.13		rs78309295-A	NR	2E-6	(GLM)	6.5925	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
1550	chr8	126534670	126534671	rs921720	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	8q24.13	Intergenic	rs921720-?		3E-12				Illumina [9725440] (imputed)	N
1550	chr8	126534670	126534671	rs921720	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	8q24.13	Intergenic	rs921720-?		3E-15				Illumina [9560910] (imputed)	N
1550	chr8	126534670	126534671	rs921720	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	8q24.13	NR	rs921720-G	0.62	1E-21	(EA)	1.1255294	[1.1-1.15]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1550	chr8	126534670	126534671	rs921720	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	8q24.13	TRIB1	rs921720-A	0.414	3E-6	(Gestational age )	0.05	[NR] wk increase	Illumina [899892]	N
1550	chr8	126534670	126534671	rs921720	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	8q24.13	TRIB1	rs921720-G	0.609	8E-20		1.081	[1.049-1.113]	Affymetrix, Illumina [1230000] (imputed)	N
1550	chr8	126536136	126536137	rs10956252	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	8q24.13	NR	rs10956252-?	NR	2E-16	(EA)			Affymetrix, Illumina [~ 9000000] (imputed)	N
1550	chr8	126536578	126536579	rs72722680	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	8q24.13	NR	rs72722680-G	NR	7E-13		0.0421	[0.031-0.054] unit decrease	Affymetrix [9000000] (imputed)	N
1550	chr8	126536578	126536579	rs72722680	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	8q24.13	NR	rs72722680-G	NR	7E-19		0.052	[0.04-0.064] unit decrease	Affymetrix [9000000] (imputed)	N
1550	chr8	126536578	126536579	rs72722680	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	8q24.13	NR	rs72722680-G	NR	2E-16		0.0481	[0.037-0.06] unit decrease	Affymetrix [9000000] (imputed)	N
1550	chr8	126536578	126536579	rs72722680	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	8q24.13	NR	rs72722680-G	NR	4E-19		0.0524	[0.041-0.064] unit decrease	Affymetrix [9000000] (imputed)	N
1550	chr8	126536578	126536579	rs72722680	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	8q24.13	NR	rs72722680-G	NR	4E-20		0.054	[0.042-0.066] unit decrease	Affymetrix [9000000] (imputed)	N
1550	chr8	126537569	126537570	rs4871611	21102463	Franke A	2010-11-21	Nat Genet	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry trios	8q24.13	intergenic	rs4871611-A	0.609	2E-12		1.17	[1.12-1.23]	Affymetrix, Illumina [953241] (imputed)	N
1550	chr8	126539964	126539965	rs1551399	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	8q24.13	RP11-136O12.2	rs1551399-?	NR	4E-19	(subset analysis)			Illumina [130052]	N
1550	chr8	126540050	126540051	rs1551398	18587394	Barrett JC	2008-06-29	Nat Genet	Genome-wide association defines more than 30 distinct susceptibility loci for Crohn's disease.	Crohn's disease	3,230 European ancestry cases, 4,829 European ancestry controls	1,339 European ancestry trios, 2,325 European ancestry cases, 1,809 European ancestry controls	8q24.13	intergenic	rs1551398-A	0.62	5E-9		1.08	[NR]	Affymetrix, Illumina [635547] (imputed)	N
1550	chr8	126552887	126552888	rs73349058	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	86,890 East Asian ancestry individuals	NA	8q24.13	NR	rs73349058-A	0.645431	3E-10		0.032295	[0.022-0.042] SD units increase	Affymetrix, Illumina [16279099] (imputed)	N
1550	chr8	126554038	126554039	rs16900706	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	93,063 East Asian ancestry individuals	NA	8q24.13		rs16900706-G	0.349507	3E-13		0.033727	[0.025-0.043] unit decrease	Illumina [13470073] (imputed)	N
1550	chr8	126554038	126554039	rs16900706	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	8q24.13		rs16900706-G	NR	3E-13		0.0337	[0.025-0.043] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
1550	chr8	126554636	126554637	rs145644097	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	8q24.13	RP11-136O12.2	rs145644097-T	NR	2E-10		0.0621684	[0.043-0.081] unit increase	Affymetrix [319769] (imputed)	N
1550	chr8	126554636	126554637	rs145644097	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	8q24.13	RP11-136O12.2	rs145644097-T	NR	5E-10		0.0607922	[0.042-0.08] unit increase	Affymetrix [319769] (imputed)	N
1550	chr8	126554636	126554637	rs145644097	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	8q24.13	RP11-136O12.2	rs145644097-T	NR	2E-9		0.059286	[0.04-0.079] unit increase	Affymetrix [321169] (imputed)	N
1550	chr8	126558349	126558350	rs1869581	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	8q24.13		rs1869581-C	NR	2E-9		0.0109	[0.0074-0.0144] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
1550	chr8	126576771	126576772	rs1809165	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	8q24.13	NR	rs1809165-C	NR	2E-13		0.0444	[0.033-0.056] unit increase	Affymetrix [9000000] (imputed)	N
1550	chr8	126576771	126576772	rs1809165	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	8q24.13	NR	rs1809165-C	NR	7E-13		0.0432	[0.031-0.055] unit increase	Affymetrix [9000000] (imputed)	N
1550	chr8	126576771	126576772	rs1809165	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	8q24.13	NR	rs1809165-C	NR	1E-13		0.0447	[0.033-0.056] unit increase	Affymetrix [9000000] (imputed)	N
1550	chr8	126576771	126576772	rs1809165	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	8q24.13	NR	rs1809165-C	NR	2E-14		0.0462	[0.034-0.058] unit increase	Affymetrix [9000000] (imputed)	N
1550	chr8	126581167	126581168	rs897148	28577822	Deters KD	2017-05-31	Brain Lang	Genome-wide association study of language performance in Alzheimer's disease.	Language performance in older adults (adjusted for episodic memory)	310 European ancestry Alzheimer's disease individuals, 511 European ancestry individuals with late mild cognitive impairment, 280 European ancestry individuals with early mild cognitive impairment, 94 European ancestry individuals with significant memory concern, 365 European ancestry individuals with normal cognition	NA	8q24.13	LOC105375745	rs897148-?	NR	3E-6		0.175	[0.1-0.25] unit decrease	Illumina [5574300] (imputed)	N
1550	chr8	126583277	126583278	rs71516801	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	8q24.13		rs71516801-G	0.955533	2E-8		0.0640374	[0.042-0.086] unit decrease	NR [11722792] (imputed)	N
1550	chr8	126583277	126583278	rs71516801	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	8q24.13		rs71516801-G	0.955533	3E-8		0.063458	[0.041-0.086] unit decrease	NR [11722792] (imputed)	N
1550	chr8	126583277	126583278	rs71516801	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small HDL	115,082 European ancestry individuals	NA	8q24.13		rs71516801-G	0.955533	2E-8		0.065151	[0.042-0.088] unit decrease	NR [11722792] (imputed)	N
1550	chr8	126583277	126583278	rs71516801	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium HDL	115,082 European ancestry individuals	NA	8q24.13		rs71516801-G	0.955533	1E-9		0.0712632	[0.048-0.094] unit decrease	NR [11722792] (imputed)	N
1550	chr8	126583277	126583278	rs71516801	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in HDL	115,082 European ancestry individuals	NA	8q24.13		rs71516801-G	0.955533	3E-9		0.0697531	[0.047-0.093] unit decrease	NR [11722792] (imputed)	N
1550	chr8	126583277	126583278	rs71516801	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	8q24.13		rs71516801-G	0.955533	5E-8		0.0621613	[0.04-0.084] unit decrease	NR [11722792] (imputed)	N
1550	chr8	126583277	126583278	rs71516801	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	8q24.13		rs71516801-G	0.955533	5E-12		0.0797762	[0.057-0.102] unit increase	NR [11722792] (imputed)	N
1550	chr8	126583277	126583278	rs71516801	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	8q24.13		rs71516801-G	0.955533	3E-11		0.0760536	[0.054-0.098] unit increase	NR [11722792] (imputed)	N
1550	chr8	126583277	126583278	rs71516801	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	8q24.13		rs71516801-G	0.955533	9E-9		0.0654538	[0.043-0.088] unit increase	NR [11722792] (imputed)	N
1550	chr8	126583277	126583278	rs71516801	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	8q24.13		rs71516801-G	0.955533	4E-9		0.0682654	[0.046-0.091] unit increase	NR [11722792] (imputed)	N
1550	chr8	126583277	126583278	rs71516801	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	8q24.13		rs71516801-G	0.955533	6E-9		0.0665565	[0.044-0.089] unit increase	NR [11722792] (imputed)	N
1550	chr8	126583277	126583278	rs71516801	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	8q24.13		rs71516801-G	0.955533	1E-8		0.0653785	[0.043-0.088] unit increase	NR [11722792] (imputed)	N
1550	chr8	126583277	126583278	rs71516801	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	8q24.13		rs71516801-G	0.955533	2E-8		0.0630714	[0.041-0.085] unit increase	NR [11722792] (imputed)	N
1550	chr8	126590561	126590562	rs1963945	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in IDL	115,082 European ancestry individuals	NA	8q24.13		rs1963945-A	0.533813	4E-8		0.022324	[0.014-0.03] unit decrease	NR [11722792] (imputed)	N
1550	chr8	126591391	126591392	rs1031497	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in LDL	115,082 European ancestry individuals	NA	8q24.13		rs1031497-T	0.534569	3E-8		0.0225526	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
1550	chr8	126609867	126609868	rs6996614	34454985	Sliz E	2021-08-26	J Allergy Clin Immunol	Uniting biobank resources reveals novel genetic pathways modulating susceptibility for atopic dermatitis.	Atopic dermatitis	22,474 European ancestry cases, 774,187 European ancestry controls	NA	8q24.13	NR	rs6996614-a	0.4491	2E-8		1.08	[1.05-1.11]	Affymetrix, Illumina [16201029] (imputed)	N
1550	chr8	126611353	126611354	rs1454618	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	8q24.13	NR	rs1454618-?	NR	1E-6				Affymetrix [NR]	N
1550	chr8	126615292	126615293	rs6470368	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	8q24.13	NR	rs6470368-T	NR	4E-9		0.0154	[0.01-0.02] unit increase	Affymetrix [9000000] (imputed)	N
1550	chr8	126615292	126615293	rs6470368	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	8q24.13	NR	rs6470368-T	NR	9E-10		0.0168	[0.012-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
1551	chr8	126616847	126616848	rs9297718	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	8q24.13		rs9297718-C	0.47105	4E-13		0.016211813	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1551	chr8	126616847	126616848	rs9297718	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	8q24.13		rs9297718-C	0.47106	1E-11		0.015116121	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1551	chr8	126616847	126616848	rs9297718	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q24.13	NR	rs9297718-C	0.435265	2E-13				Affymetrix, Illumina [19872809] (imputed)	N
1551	chr8	126616847	126616848	rs9297718	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	8q24.13	NR	rs9297718-C	0.470867	2E-16		0.016374	[0.012-0.02] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
1551	chr8	126616847	126616848	rs9297718	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	8q24.13		rs9297718-?	NR	2E-14				NR [~ 8900000] (imputed)	N
1551	chr8	126617989	126617990	rs12334935	34785669	Grosche S	2021-11-16	Nat Commun	Rare variant analysis in eczema identifies exonic variants in DUSP1, NOTCH4 and SLC9A4.	Eczema	20,016 European ancestry cases, 380,433 European ancestry controls	NA	8q24.13		rs12334935-A	0.4892	2E-13		1.09		Affymetrix, Illumina [9397031] (imputed)	N
1551	chr8	126617989	126617990	rs12334935	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	8q24.13		rs12334935-A	0.472219	2E-11		0.014978491	[0.011-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
1551	chr8	126619476	126619477	rs28393360	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	8q24.13		rs28393360-A	NR	2E-10		0.0134	[0.0093-0.0175] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
1551	chr8	126619476	126619477	rs28393360	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8q24.13	RP11-136O12.2	rs28393360-A	NR	2E-8		0.0160874	[0.01-0.022] unit decrease	Affymetrix [321114] (imputed)	N
1551	chr8	126619476	126619477	rs28393360	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	8q24.13	RP11-136O12.2	rs28393360-A	NR	1E-8		0.0164074	[0.011-0.022] unit decrease	Affymetrix [321169] (imputed)	N
1551	chr8	126619476	126619477	rs28393360	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	8q24.13		rs28393360-A	0.477305	9E-11		0.014583833	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
1551	chr8	126619476	126619477	rs28393360	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	8q24.13		rs28393360-A	0.477327	7E-16		0.018068621	[0.014-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1551	chr8	126620428	126620429	rs969584	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	8q24.13	TRIB1, FAM84B	rs969584-G	0.351	2E-7		0.0284753	[0.018-0.039] unit decrease	Illumina [13520550] (imputed)	N
1551	chr8	126621936	126621937	rs7004432	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	8q24.13	NR	rs7004432-G	NR	1E-11		0.0206	[0.015-0.026] unit increase	Affymetrix [9000000] (imputed)	N
1551	chr8	126621936	126621937	rs7004432	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	8q24.13	NR	rs7004432-G	NR	2E-9		0.0182	[0.012-0.024] unit increase	Affymetrix [9000000] (imputed)	N
1551	chr8	126628435	126628436	rs11998186	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	8q24.13		rs11998186-G	0.866612	9E-9		0.0331226	[0.022-0.044] unit decrease	NR [11722792] (imputed)	N
1551	chr8	126628840	126628841	rs12546096	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	8q24.13	TRIB1	rs12546096-A	0.747432	5E-11		0.0150286	[0.011-0.02] unit increase	Affymetrix [NR] (imputed)	N
1551	chr8	126629327	126629328	rs4871624	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	8q24.13	TRIB1	rs4871624-T	0.713272	4E-22		0.0204064	[0.016-0.025] unit increase	Affymetrix [NR] (imputed)	N
1551	chr8	126629593	126629594	rs10755927	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	8q24.13		rs10755927-?	NR	4E-10				NR [~ 8900000] (imputed)	N
1551	chr8	126630567	126630568	rs72724622	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	8q24.13		rs72724622-G	0.844958	4E-8		0.0304321	[0.02-0.041] unit increase	NR [11722792] (imputed)	N
1551	chr8	126630966	126630967	rs114443260	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	8q24.13	TRIB1	rs114443260-C	0.729519	1E-36		0.0283888	[0.024-0.033] unit decrease	Affymetrix [NR] (imputed)	N
1551	chr8	126632213	126632214	rs960667	32066700	Zhang R	2020-02-05	Transl Psychiatry	Genome-wide study of immune biomarkers in cerebrospinal fluid and serum from patients with bipolar disorder and controls.	Serum immune biomarker levels	184 Scandinavian ancestry bipolar disorder cases, 107 Scandinavian ancestry controls	NA	8q24.13	intergenic	rs960667-T	0.976	4E-9	(YKL-40)	24890.0	NR unit decrease	Affymetrix, Illumina [> 5000000] (imputed)	N
1551	chr8	126633530	126633531	rs62521592	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	8q24.13	NR	rs62521592-T	NR	1E-18		0.0477	[0.037-0.058] unit decrease	Affymetrix [9000000] (imputed)	N
1551	chr8	126633530	126633531	rs62521592	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	8q24.13	NR	rs62521592-T	NR	3E-19		0.0486	[0.038-0.059] unit decrease	Affymetrix [9000000] (imputed)	N
1551	chr8	126633530	126633531	rs62521592	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	8q24.13	NR	rs62521592-T	NR	3E-18		0.0472	[0.037-0.058] unit decrease	Affymetrix [9000000] (imputed)	N
1551	chr8	126633530	126633531	rs62521592	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	8q24.13	NR	rs62521592-T	NR	2E-19		0.049	[0.038-0.06] unit decrease	Affymetrix [9000000] (imputed)	N
1551	chr8	126635593	126635594	rs4870949	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	8q24.13	NR	rs4870949-C	NR	7E-12		0.0483	[0.035-0.062] unit increase	Affymetrix [9000000] (imputed)	N
1551	chr8	126635593	126635594	rs4870949	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	8q24.13	NR	rs4870949-C	NR	4E-9		0.0416	[0.028-0.055] unit increase	Affymetrix [9000000] (imputed)	N
1551	chr8	126635593	126635594	rs4870949	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	8q24.13	NR	rs4870949-C	NR	2E-9		0.0425	[0.029-0.056] unit increase	Affymetrix [9000000] (imputed)	N
1551	chr8	126644199	126644200	rs2124034	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	8q24.13	TRIB1	rs2124034-T	0.71375	9E-10		0.0140945	[0.0096-0.0186] unit decrease	Affymetrix [NR] (imputed)	N
1551	chr8	126645809	126645810	rs13273592	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	8q24.13	NR	rs13273592-C	NR	5E-34		0.032	[0.027-0.037] unit increase	Affymetrix [9000000] (imputed)	N
1551	chr8	126645809	126645810	rs13273592	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	8q24.13	NR	rs13273592-C	NR	3E-11		0.0175	[0.012-0.023] unit increase	Affymetrix [9000000] (imputed)	N
1551	chr8	126645809	126645810	rs13273592	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	8q24.13	NR	rs13273592-C	NR	3E-20		0.0254	[0.02-0.031] unit decrease	Affymetrix [9000000] (imputed)	N
1551	chr8	126645809	126645810	rs13273592	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	8q24.13	NR	rs13273592-C	NR	5E-15		0.0207	[0.016-0.026] unit increase	Affymetrix [9000000] (imputed)	N
1551	chr8	126645809	126645810	rs13273592	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	8q24.13	NR	rs13273592-C	NR	2E-9		0.0166	[0.011-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
1551	chr8	126645809	126645810	rs13273592	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	8q24.13	NR	rs13273592-C	NR	1E-11		0.0178	[0.013-0.023] unit increase	Affymetrix [9000000] (imputed)	N
1551	chr8	126649040	126649041	rs16900766	32117412	Boua PR	2020-02-07	Front Genet	Novel and Known Gene-Smoking Interactions With cIMT Identified as Potential Drivers for Atherosclerosis Risk in West-African Populations of the AWI-Gen Study.	Carotid intima media thickness x smoking interaction	465 West African ancestry male smokers, 1,311 West African ancestry male non-smokers	NA	8q24.13	TRIB1, LINC00861	rs16900766-A	NR	8E-6		4.458	NR z score decrease	Illumina [7839440] (imputed)	N
1551	chr8	126650057	126650058	rs28469864	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	8q24.13		rs28469864-A	0.898961	2E-8		0.0370436	[0.024-0.05] unit decrease	NR [11722792] (imputed)	N
1551	chr8	126650057	126650058	rs28469864	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	8q24.13		rs28469864-A	0.898939	2E-8		0.0365737	[0.024-0.049] unit decrease	NR [11722792] (imputed)	N
1551	chr8	126650057	126650058	rs28469864	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip	15 Asian ancestry cases, 13 European ancestry cases, 15 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	8q24.13	NR	rs28469864-?	NR	4E-6		4.09	[3.12-5.35]	Illumina [539000] (imputed)	N
1551	chr8	126694376	126694377	rs2054067	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	8q24.13	TRIB1	rs2054067-A	0.62964	5E-8		0.0113173	[0.0073-0.0154] unit increase	Affymetrix [NR] (imputed)	N
1552	chr8	126757240	126757241	rs73705028	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	8q24.13	TRIB1, FAM84B	rs73705028-T	NR	6E-6		0.280741	[0.16-0.4] unit decrease	Illumina [at least 950000] (imputed)	N
1552	chr8	126773758	126773759	rs76540613	34288885	Lin WD	2021-07-01	Eur J Endocrinol	Genetic factors of idiopathic central precocious puberty and their polygenic risk in early puberty.	Idiopathic central precocious puberty	256 Han Chinese ancestry cases, 118 Han Chinese ancestry controls	65 Han Chinese ancestry cases, 30 Han Chinese ancestry controls	8q24.13		rs76540613-A	NR	2E-7		4.43	[2.53-7.78]	Affymetrix [NR] (imputed)	N
1552	chr8	126784102	126784103	rs78786429	34020725	Reddy JS	2021-05-21	Acta Neuropathol Commun	Genome-wide analysis identifies a novel LINC-PINT splice variant associated with vascular amyloid pathology in Alzheimer's disease.	Cerebral amyloid angiopathy x sex interaction in Alzheimer's disease	370 European ancestry men, 451 European ancestry women	NA		LINC00861	rs78786429-A	0.08	9E-6				Illumina [1679420] (imputed)	N
1552	chr8	126867504	126867505	rs4006531	23934736	Yu B	2013-08-11	Genet Epidemiol	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels (Dihydroxy docosatrienoic acid)	1,260 African American individuals	NA	8q24.13	LOC100130231	rs4006531-A		7E-7		0.11	[0.07-0.16] unit increase	Affymetrix [~ 2500000] (imputed)	N
1553	chr8	126971001	126971002	rs16901004	28881265	Sobalska-Kwapis M	2017-09-01	Eur J Obstet Gynecol Reprod Biol	New variants near RHOJ and C2, HLA-DRA region and susceptibility to endometriosis in the Polish population-The genome-wide association study.	Endometriosis	171 European ancestry cases, 2,934 European ancestry controls	NA	8q24.13	NR	rs16901004-T	0.198	9E-7		1.866	[1.45-2.403]	Illumina [274400]	N
1554	chr8	127092881	127092882	rs1906493	22412388	Kenny EE	2012-03-08	PLoS Genet	A genome-wide scan of Ashkenazi Jewish Crohn's disease suggests novel susceptibility loci.	Crohn's disease	737 Ashkenazi Jewish cases, 2,257  Ashkenazi Jewish controls	971 Ashkenazi Jewish cases, 2,124 Ashkenazi Jewish controls	8q24.13	intergenic	rs1906493-A	0.432	3E-6		1.19	[1.09-1.28]	Affymetrix, Illumina [1060934] (imputed)	N
1555	chr8	127213397	127213398	rs188227250	31090166	Lai D	2019-05-14	Genes Brain Behav	Genome-wide association studies of alcohol dependence, DSM-IV criterion count, and individual criteria.	Alcohol dependence (drinking more than intended)	3,826 European ancestry cases, 1,317 African American cases, 3,480 European ancestry controls, 1,817 African American controls	3,129 European ancestry cases, 2,032 African American cases, 1,921 European ancestry controls, 906 African American controls	8q24.13	LINC00861, LOC101927657	rs188227250-?	NR	4E-9	(EA)			Illumina [up to 8021023] (imputed)	N
1555	chr8	127247910	127247911	rs9297733	31926482	Shen H	2020-01-11	Neuropsychopharmacology	Polygenic prediction and GWAS of depression, PTSD, and suicidal ideation/self-harm in a Peruvian cohort.	Post-traumatic stress disorder	1,698 Peruvian cases, 1,716 Peruvian controls	NA	8q24.13	NR	rs9297733-G		5E-6		1.252	[NR]	NR [3389129] (imputed)	N
1556	chr8	127332656	127332657	rs11986011	23326517	Holliday EG	2013-01-11	PLoS One	Insights into the genetic architecture of early stage age-related macular degeneration: a genome-wide association study meta-analysis.	Age-related macular degeneration	3,772 European ancestry cases, 16,033 European ancestry controls	264 Asian ancestry cases, 3,926 Asian ancestry controls	8q24.21	intergenic	rs11986011-T	0.02	5E-6		2.5	[1.68-3.71]	Affymetrix, Illumina [~ 2500000] (imputed)	N
1556	chr8	127332656	127332657	rs11986011	23326517	Holliday EG	2013-01-11	PLoS One	Insights into the genetic architecture of early stage age-related macular degeneration: a genome-wide association study meta-analysis.	Age-related macular degeneration	3,772 European ancestry cases, 16,033 European ancestry controls	264 Asian ancestry cases, 3,926 Asian ancestry controls	8q24.21	FAM84B	rs11986011-T	0.02	5E-6	(EA)	2.5	[1.68-3.71]	Affymetrix, Illumina [~ 2500000] (imputed)	N
1556	chr8	127353537	127353538	rs118152978	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	8q24.21	Intergenic	rs118152978-A	NR	2E-10	(between families)	6.359	unit decrease	Affymetrix [up to 15107142] (imputed)	N
1557	chr8	127432159	127432160	rs554171006	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	8q24.21		rs554171006-A	0.0013613	4E-6		0.42615	[0.25-0.61] unit increase	Affymetrix [15580782] (imputed)	N
1557	chr8	127484543	127484544	rs115566642	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-to-hip ratio adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,049 whole genome sequenced individuals, 29,518 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,001 Mylopotamos (founder/genetic isolate) individuals, 867 Pomak (founder/genetic isolate) individuals	206,045 European ancestry individuals	8q24.21	RP11-103H7.1	rs115566642-T	0.0487	6E-6		0.0894	[0.051-0.128] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1557	chr8	127489029	127489030	rs11989898	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	8q24.21	NR	rs11989898-G	NR	2E-26		0.0356	[0.029-0.042] unit increase	Affymetrix [9000000] (imputed)	N
1557	chr8	127489029	127489030	rs11989898	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	8q24.21	FAM84B	rs11989898-A	0.7844	3E-20		0.008	[0.0062-0.0098] unit decrease	Affymetrix, Illumina [8176554] (imputed)	N
1557	chr8	127495575	127495576	rs6998726	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	8q24.21		rs6998726-A	NR	1E-35		0.0261	[0.022-0.03] unit decrease	Affymetrix, Illumina [20538307] (imputed)	N
1557	chr8	127495575	127495576	rs6998726	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	148,767 East Asian ancestry individuals	NA	8q24.21		rs6998726-A	0.483681	3E-8		0.0194543	[0.013-0.026] unit decrease	Illumina [13478792] (imputed)	N
1557	chr8	127509237	127509238	rs12546489	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	8q24.21	RP11-103H7.2	rs12546489-A	0.089593	2E-9		0.0232848	[0.016-0.031] unit increase	Affymetrix [93095623] (imputed)	N
1557	chr8	127509237	127509238	rs12546489	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	8q24.21		rs12546489-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1557	chr8	127513349	127513350	rs12548156	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	8q24.21		rs12548156-C	NR	3E-11		0.0187	[0.013-0.024] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
1557	chr8	127520374	127520375	rs12550442	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	8q24.21	RNU6-869P	rs12550442-T	0.089255	4E-13		0.028173944	[0.021-0.036] unit increase	Affymetrix [93095623] (imputed)	N
1557	chr8	127520374	127520375	rs12550442	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q24.21	NR	rs12550442-T	0.12922	9E-12				Affymetrix, Illumina [24649327] (imputed)	N
1557	chr8	127520374	127520375	rs12550442	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	8q24.21	NR	rs12550442-T	0.088889	3E-10		0.020404	[0.014-0.027] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
1557	chr8	127520374	127520375	rs12550442	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q24.21	NR	rs12550442-T	0.118697	3E-15				Affymetrix, Illumina [19872809] (imputed)	N
1557	chr8	127520374	127520375	rs12550442	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	8q24.21	NR	rs12550442-T	0.089179	7E-17		0.02914	[0.022-0.036] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
1557	chr8	127520374	127520375	rs12550442	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	8q24.21		rs12550442-?	NR	8E-11				NR [~ 8900000] (imputed)	N
1557	chr8	127520747	127520748	rs17740564	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	8q24.21	NR	rs17740564-C	NR	3E-10		0.0344	[0.024-0.045] unit increase	Affymetrix [9000000] (imputed)	N
1558	chr8	127578989	127578989	rs34485659	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	8q24.21	NR	rs34485659-TG	NR	8E-11		0.0229	[0.016-0.03] unit increase	Affymetrix [9000000] (imputed)	N
1558	chr8	127649910	127649911	rs9297743	29077507	Chen H	2017-10-27	Am J Respir Cell Mol Biol	Multi-ethnic Meta-analysis Identifies RAI1 as a Possible Obstructive Sleep Apnea Related Quantitative Trait Locus in Men.	Obstructive sleep apnea during REM sleep (apnea hypopnea index)	677 African American women, 544 African American men, 115 Asian women, 113 Asian men, 1,825 European ancestry women, 3,902 European ancestry men,  7,492 Hispanic women, 5,065 Hispanic men	NA	8q24.21	RP11-89K10.1	rs9297743-G		9E-7	(men)	0.241	[NR] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1560	chr8	127796182	127796183	rs75777376	31562322	Takata R	2019-09-27	Nat Commun	12 new susceptibility loci for prostate cancer identified by genome-wide association study in Japanese population.	Prostate cancer	5,088 Japanese ancestry cases, 10,682 Japanese ancestry controls	4,818 Japanese ancestry cases, 73,261 Japanese ancestry controls	8q24.21	intergenic	rs75777376-C	0.923	1E-20		1.32626	NR	Illumina [7742602] (imputed)	N
1560	chr8	127824799	127824800	rs10505492	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	8q24.21		rs10505492-?	NR	2E-9				Affymetrix [NR] (imputed)	N
1560	chr8	127826605	127826606	rs58238719	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	8q24.21		rs58238719-?	NR	2E-9				Affymetrix [NR] (imputed)	N
1560	chr8	127830467	127830468	rs80034179	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	8q24.21		rs80034179-?	NR	1E-9				Affymetrix [NR] (imputed)	N
1560	chr8	127834829	127834830	rs16901718	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	8q24.21		rs16901718-?	NR	4E-9				Affymetrix [NR] (imputed)	N
1560	chr8	127836925	127836927	rs57588856	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	8q24.21	NR	rs57588856-C	NR	2E-7		1.047	[1.03-1.07]	Affymetrix, Illumina [29235255] (imputed)	N
1560	chr8	127846929	127846930	rs146851087	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	8q24.21		rs146851087-A	NR	2E-9		1.540832	[1.34-1.77]	Affymetrix [7846216] (imputed)	N
1560	chr8	127881951	127881952	rs16901814	31562322	Takata R	2019-09-27	Nat Commun	12 new susceptibility loci for prostate cancer identified by genome-wide association study in Japanese population.	Prostate cancer	5,088 Japanese ancestry cases, 10,682 Japanese ancestry controls	4,818 Japanese ancestry cases, 73,261 Japanese ancestry controls	8q24.21	intergenic	rs16901814-G	0.838	6E-12		1.167	NR	Illumina [7742602] (imputed)	N
1560	chr8	127901648	127901649	rs6984837	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 91,972 European ancestry controls	6,852 European ancestry cases, 193,117 European ancestry controls	8q24.21	NR	rs6984837-G	0.33391118	1E-6		1.0965812	[1.06-1.14]	Affymetrix, Illumina [20400945] (imputed)	N
1560	chr8	127901648	127901649	rs6984837	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	8q24.21	NR	rs6984837-G	NR	7E-24		1.085	[1.07-1.10]	Affymetrix, Illumina [29235255] (imputed)	N
1560	chr8	127901648	127901649	rs6984837	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	8,611 East Asian ancestry cases, 18,809 East Asian ancestry controls	NA	8q24.21	NR	rs6984837-G	0.198	1E-7		1.137	[1.08-1.19]	Affymetrix, Illumina [10186136] (imputed)	N
1560	chr8	127902002	127902003	rs4871750	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	8q24.21	FAM84B	rs4871750-A	0.383	4E-7	(Bone mineral content )	0.04	[NR] kg increase	Illumina [899892]	N
1560	chr8	127911005	127911006	rs11775030	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	8q24.21		rs11775030-G	NR	4E-8		1.086	[1.054-1.118]	Affymetrix [7846216] (imputed)	N
1560	chr8	127911595	127911596	rs2220321	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	8q24.21	FAM84B	rs2220321-A	0.385	8E-6	(BMD )	0.03	[NR] g/cm2 increase	Illumina [899892]	N
1560	chr8	127922199	127922200	rs7011138	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	8q24.21	NR	rs7011138-A	NR	2E-8		0.94	[0.92-0.96]	Affymetrix, Illumina [29235255] (imputed)	N
1560	chr8	127922199	127922200	rs7011138	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	8,611 East Asian ancestry cases, 18,809 East Asian ancestry controls	NA	8q24.21	NR	rs7011138-A	0.847	1E-13		0.822	[0.78-0.87]	Affymetrix, Illumina [10186136] (imputed)	N
1560	chr8	127922199	127922200	rs7011138	29531279	Zhou S	2018-03-12	Sci Rep	Genome-wide association analysis identifies new candidate risk loci for familial intracranial aneurysm in the French-Canadian population.	Intracranial aneurysm	173 French Canadian cases, 1,772 French Canadian controls	2,617 cases, 1,416 controls	8q24.21	PCAT1	rs7011138-?		1E-6	(French Canadians)	2.38087		Illumina [7614484] (imputed)	N
1560	chr8	127924411	127924412	rs13249021	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Prostate cancer	5,408 Japanese ancestry cases, 103,939 Japanese ancestry controls	NA	8q24.21		rs13249021-G	NR	8E-6		0.89678687	[0.854812814115793-0.940822030368113]	Illumina [8919992] (imputed)	N
1561	chr8	127933692	127933693	rs1906223	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	8q24.21		rs1906223-?	NR	4E-10				NR [~ 8900000] (imputed)	N
1561	chr8	127990832	127990833	rs7014448	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	8q24.21	PCAT1	rs7014448-T	0.320827	7E-36		0.0248445	[0.021-0.029] unit increase	NR [13737936] (imputed)	N
1561	chr8	127990832	127990833	rs7014448	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	8q24.21		rs7014448-?	NR	7E-42		0.0291246	[0.025-0.034] unit increase	Affymetrix [20259828] (imputed)	N
1561	chr8	128003036	128003037	rs17762342	27432226	Kar SP	2016-07-17	Cancer Discov	Genome-Wide Meta-Analyses of Breast, Ovarian, and Prostate Cancer Association Studies Identify Multiple New Susceptibility Loci Shared by at Least Two Cancer Types.	Breast cancer, ovarian cancer or prostate cancer (pleiotropy)	62,533 European ancestry breast cancer female cases, 60,976 European ancestry controls, 15,437 European ancestry invasive epithelial ovarian cancer female cases, 30,845 European ancestry controls, 34,379 European ancestry prostate cancer male cases, 33,164 European ancestry controls	NA	8q24.21	PCAT1/PCAT2	rs17762342-A	0.7935	2E-15		0.061	[0.046-0.076] unit increase	Illumina [NR]	N
1561	chr8	128011936	128011937	rs10086908	31562322	Takata R	2019-09-27	Nat Commun	12 new susceptibility loci for prostate cancer identified by genome-wide association study in Japanese population.	Prostate cancer	5,088 Japanese ancestry cases, 10,682 Japanese ancestry controls	4,818 Japanese ancestry cases, 73,261 Japanese ancestry controls	8q24.21	intergenic	rs10086908-T	0.797	7E-14		1.269	NR	Illumina [7742602] (imputed)	N
1561	chr8	128011936	128011937	rs10086908	26034056	Hoffmann TJ	2015-06-01	Cancer Discov	A large multiethnic genome-wide association study of prostate cancer identifies novel risk variants and substantial ethnic differences.	Prostate cancer	6,406 European ancestry cases, 601 African American cases, 288 East Asian ancestry cases, 488 Latino cases30,866 European ancestry controls, 1,650 African American controls, 2,938 East Asian ancestry controls, 3,141 Latino controls	4,599 European ancestry cases, 2,265 African American cases, 2,940 European ancestry controls, 2,414 African American controls	8q24.21	NR	rs10086908-T	0.71	2E-12		1.17	[1.12-1.22]	Affymetrix [up to 19977088] (imputed)	N
1561	chr8	128011936	128011937	rs10086908	26034056	Hoffmann TJ	2015-06-01	Cancer Discov	A large multiethnic genome-wide association study of prostate cancer identifies novel risk variants and substantial ethnic differences.	Prostate cancer	6,406 European ancestry cases, 601 African American cases, 288 East Asian ancestry cases, 488 Latino cases30,866 European ancestry controls, 1,650 African American controls, 2,938 East Asian ancestry controls, 3,141 Latino controls	4,599 European ancestry cases, 2,265 African American cases, 2,940 European ancestry controls, 2,414 African American controls	8q24.21	NR	rs10086908-T	0.71	2E-10	(European)	1.17	[1.12-1.23]	Affymetrix [up to 19977088] (imputed)	N
1561	chr8	128021487	128021488	rs1487241	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	8q24.21		rs1487241-?	NR	7E-42				NR [~ 8900000] (imputed)	N
1561	chr8	128021487	128021488	rs1487241	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	8q24.21		rs1487241-?	NR	8E-42		0.0290413	[0.025-0.033] unit increase	Affymetrix [20259828] (imputed)	N
1561	chr8	128021487	128021488	rs1487241	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	8q24.21	PCAT1	rs1487241-A	0.321941	1E-6	(women)	0.0251997	[0.016-0.035] unit increase	NR [17166351] (imputed)	N
1561	chr8	128021487	128021488	rs1487241	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	8q24.21	PCAT1	rs1487241-A	0.321285	2E-11		0.025572	[0.018-0.033] unit increase	NR [17166351] (imputed)	N
1561	chr8	128021487	128021488	rs1487241	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	8q24.21	PCAT1	rs1487241-A	0.320534	4E-6	(men)	0.0255413	[0.015-0.036] unit increase	NR [17166351] (imputed)	N
1561	chr8	128027953	128027954	rs7463326	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 91,972 European ancestry controls	6,852 European ancestry cases, 193,117 European ancestry controls	8q24.21	NR	rs7463326-G	0.754976862	5E-11		1.1732173	[1.12-1.23]	Affymetrix, Illumina [20400945] (imputed)	N
1561	chr8	128027953	128027954	rs7463326	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	8q24.21	NR	rs7463326-G	NR	2E-82		1.181	[1.16-1.20]	Affymetrix, Illumina [29235255] (imputed)	N
1561	chr8	128027953	128027954	rs7463326	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	8,611 East Asian ancestry cases, 18,809 East Asian ancestry controls	NA	8q24.21	NR	rs7463326-G	0.801	4E-25		1.265	[1.21-1.32]	Affymetrix, Illumina [10186136] (imputed)	N
1561	chr8	128027953	128027954	rs7463326	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	10,368 African ancestry cases, 10,986 African ancestry controls	NA	8q24.21	NR	rs7463326-G	0.84	5E-15		1.274	[1.20-1.35]	Affymetrix, Illumina [18877980] (imputed)	N
1561	chr8	128046528	128046529	rs9969411	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Prostate cancer	5,408 Japanese ancestry cases, 103,939 Japanese ancestry controls	NA	8q24.21		rs9969411-A	NR	4E-23		0.7784415	[0.740819369792749-0.817974231333113]	Illumina [8919992] (imputed)	N
1562	chr8	128070034	128070035	rs10113175	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in never smokers	2,355 European ancestry cases,  7,504 European ancestry controls	NA	8q24.21	PCAT1, PCAT2	rs10113175-G	0.964893333	9E-6		1.5820769	[1.29-1.94]	Illumina [10439017] (imputed)	N
1562	chr8	128074814	128074815	rs72725854	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	8q24.21	NR	rs72725854-T	NR	4E-82		2.087	[1.94-2.25]	Affymetrix, Illumina [29235255] (imputed)	N
1562	chr8	128074814	128074815	rs72725854	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	10,368 African ancestry cases, 10,986 African ancestry controls	NA	8q24.21	NR	rs72725854-T	0.061	4E-82		2.087	[1.94-2.25]	Affymetrix, Illumina [18877980] (imputed)	N
1562	chr8	128074814	128074815	rs72725854	29356057	Du Z	2018-01-21	Prostate	Genetic risk of prostate cancer in Ugandan men.	Prostate cancer	560 Ugandan ancestry cases, 480 Ugandan ancestry controls	NA	8q24.21	NR	rs72725854-T	0.06	2E-11		3.37	[2.36-4.82]	Illumina [17125421] (imputed)	N
1562	chr8	128077145	128077146	rs77541621	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	8q24.21	PCAT2	rs77541621-A	NR	6E-11		0.0591898	[0.041-0.077] unit decrease	Affymetrix [321788] (imputed)	N
1562	chr8	128077145	128077146	rs77541621	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 91,972 European ancestry controls	6,852 European ancestry cases, 193,117 European ancestry controls	8q24.21	NR	rs77541621-A	0.02865675	1E-48		1.8859878	[1.73-2.05]	Affymetrix, Illumina [20400945] (imputed)	N
1562	chr8	128077145	128077146	rs77541621	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	8q24.21	NR	rs77541621-A	NR	5E-147		1.892	[1.80-1.99]	Affymetrix, Illumina [29235255] (imputed)	N
1562	chr8	128077145	128077146	rs77541621	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Prostate cancer	10,792 European ancestry cases, 410,350 European ancestry controls	NA	8q24.21		rs77541621-A	NR	1E-58		1.8556317	NR	Affymetrix [7846216] (imputed)	N
1562	chr8	128077145	128077146	rs77541621	26034056	Hoffmann TJ	2015-06-01	Cancer Discov	A large multiethnic genome-wide association study of prostate cancer identifies novel risk variants and substantial ethnic differences.	Prostate cancer	6,406 European ancestry cases, 601 African American cases, 288 East Asian ancestry cases, 488 Latino cases30,866 European ancestry controls, 1,650 African American controls, 2,938 East Asian ancestry controls, 3,141 Latino controls	4,599 European ancestry cases, 2,265 African American cases, 2,940 European ancestry controls, 2,414 African American controls	8q24.21	NR	rs77541621-A	0.022	2E-26	(conditioned, EA)	2.0408163	[1.79-2.33]	Affymetrix [up to 19977088] (imputed)	N
1562	chr8	128087828	128087829	rs76595456	32986714	Fiorica PN	2020-09-28	PLoS One	Multi-ethnic transcriptome-wide association study of prostate cancer.	Prostate cancer	2,463 African American or Afro-Caribbean cases, 2,306 African American or Afro-Caribbean controls	NA	8q24.21	LINC01245	rs76595456-T		1E-15		0.55	unit increase	Illumina [15394464] (imputed)	N
1562	chr8	128093296	128093297	rs1016343	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Cancer	56,634 White British ancestry cases, 218,196 White British ancestry controls	NA	8q24.21		rs1016343-?	NR	7E-6		1.03861	[1.02-1.06]	NR [688737]	N
1562	chr8	128093296	128093297	rs1016343	33293427	Emami NC	2020-12-08	Cancer Res	A large-scale association study detects novel rare variants, risk genes, functional elements, and polygenic architecture of prostate cancer susceptibility.	Prostate cancer	14,113 European ancestry cases, 194,140 European ancestry controls	NA	8q24.21	NR	rs1016343-T	NR	4E-41		1.25	NR	Affymetrix [at least 232408] (imputed)	N
1562	chr8	128093296	128093297	rs1016343	26034056	Hoffmann TJ	2015-06-01	Cancer Discov	A large multiethnic genome-wide association study of prostate cancer identifies novel risk variants and substantial ethnic differences.	Prostate cancer	6,406 European ancestry cases, 601 African American cases, 288 East Asian ancestry cases, 488 Latino cases30,866 European ancestry controls, 1,650 African American controls, 2,938 East Asian ancestry controls, 3,141 Latino controls	4,599 European ancestry cases, 2,265 African American cases, 2,940 European ancestry controls, 2,414 African American controls	8q24.21	NR	rs1016343-T	0.21	6E-21		1.25	[1.19-1.30]	Affymetrix [up to 19977088] (imputed)	N
1562	chr8	128093296	128093297	rs1016343	26034056	Hoffmann TJ	2015-06-01	Cancer Discov	A large multiethnic genome-wide association study of prostate cancer identifies novel risk variants and substantial ethnic differences.	Prostate cancer	6,406 European ancestry cases, 601 African American cases, 288 East Asian ancestry cases, 488 Latino cases30,866 European ancestry controls, 1,650 African American controls, 2,938 East Asian ancestry controls, 3,141 Latino controls	4,599 European ancestry cases, 2,265 African American cases, 2,940 European ancestry controls, 2,414 African American controls	8q24.21	NR	rs1016343-T	0.21	5E-21	(European)	1.28	[1.21-1.34]	Affymetrix [up to 19977088] (imputed)	N
1562	chr8	128093296	128093297	rs1016343	21743057	Schumacher FR	2011-07-08	Hum Mol Genet	Genome-wide association study identifies new prostate cancer susceptibility loci.	Prostate cancer	2,782 European ancestry cases, 4,458 European ancestry controls	7,358 European ancestry cases, 6,732 European ancestry controls	8q24.21	intergenic	rs1016343-T	NR	4E-10		1.31	[1.20-1.42]	Illumina [571243]	N
1562	chr8	128093296	128093297	rs1016343	18264097	Eeles RA	2008-02-10	Nat Genet	Multiple newly identified loci associated with prostate cancer susceptibility.	Prostate cancer	1,854 European ancestry cases, 1,894 European ancestry controls	3,268 European ancestry cases, 3,366 European ancestry controls	8q24.21	intergenic	rs1016343-T	0.18	1E-7		1.37	[NR]	Illumina [541129]	N
1562	chr8	128095155	128095156	rs13252298	26034056	Hoffmann TJ	2015-06-01	Cancer Discov	A large multiethnic genome-wide association study of prostate cancer identifies novel risk variants and substantial ethnic differences.	Prostate cancer	6,406 European ancestry cases, 601 African American cases, 288 East Asian ancestry cases, 488 Latino cases30,866 European ancestry controls, 1,650 African American controls, 2,938 East Asian ancestry controls, 3,141 Latino controls	4,599 European ancestry cases, 2,265 African American cases, 2,940 European ancestry controls, 2,414 African American controls	8q24.21	NR	rs13252298-A	0.71	2E-6		1.11	[1.06-1.16]	Affymetrix [up to 19977088] (imputed)	N
1562	chr8	128095155	128095156	rs13252298	21743057	Schumacher FR	2011-07-08	Hum Mol Genet	Genome-wide association study identifies new prostate cancer susceptibility loci.	Prostate cancer	2,782 European ancestry cases, 4,458 European ancestry controls	7,358 European ancestry cases, 6,732 European ancestry controls	8q24.21	intergenic	rs13252298-A	NR	4E-6	(conditioned on 5 SNPs)	1.12	[1.05-1.18]	Illumina [571243]	N
1562	chr8	128100029	128100029	rs551191707	31537649	Salem RM	2019-09-19	J Am Soc Nephrol	Genome-Wide Association Study of Diabetic Kidney Disease Highlights Biology Involved in Glomerular Basement Membrane Collagen.	Kidney disease (end stage renal disease vs macroalbuminuria) in type 1 diabetes	2,187 European ancestry cases, 2,725 European ancestry controls	NA	8q24.21	PRNCR1	rs551191707-CA	0.122	4E-8		1.7	[NR]	Illumina [up to 49000000] (imputed)	N
1562	chr8	128103936	128103937	rs1456315	32986714	Fiorica PN	2020-09-28	PLoS One	Multi-ethnic transcriptome-wide association study of prostate cancer.	Prostate cancer	1,106 Japanese American cases, 1,093 Japanese American controls	NA	8q24.21	LINC01245	rs1456315-?		1E-13		0.5	unit decrease	Illumina [4623264] (imputed)	N
1562	chr8	128103936	128103937	rs1456315	23023329	Xu J	2012-09-30	Nat Genet	Genome-wide association study in Chinese men identifies two new prostate cancer risk loci at 9q31.2 and 19q13.4.	Prostate cancer	1,417 Han Chinese ancestry cases, 1,008 Han Chinese ancestry controls	3,067 Han Chinese ancestry cases, 7,926 Han Chinese ancestry controls	8q24.21	intergenic	rs1456315-?	NR	1E-12				Illumina [587294]	N
1562	chr8	128103936	128103937	rs1456315	20676098	Takata R	2010-08-01	Nat Genet	Genome-wide association study identifies five new susceptibility loci for prostate cancer in the Japanese population.	Prostate cancer	1,583 Japanese ancestry cases, 3,386 Japanese ancestry controls	3,001 Japanese ancestry cases, 5,415 Japanese ancestry controls	8q24.21	intergenic	rs1456315-?	NR	2E-29				Illumina [510687]	N
1562	chr8	128103968	128103969	rs72725879	34737962	Lin X	2021-10-19	Front Oncol	A Germline Variant at 8q24 Contributes to the Serum p2PSA Level in a Chinese Prostate Biopsy Cohort.	Serum p2 prostate specific antigen levels	886 Chinese ancestry individuals	1,128 Chinese ancestry individuals	8q24.21		rs72725879-T	0.76	2E-9		0.14	[0.095-0.185] pg/ml increase	Illumina [17098949] (imputed)	N
1562	chr8	128103968	128103969	rs72725879	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Prostate cancer	5,672 East Asian ancestry cases, 84,660 East Asian ancestry controls	NA	8q24.21		rs72725879-T	0.614258974	1E-115		0.49992305	[0.46-0.54] unit increase	Illumina [13406905] (imputed)	N
1562	chr8	128103968	128103969	rs72725879	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 91,972 European ancestry controls	6,852 European ancestry cases, 193,117 European ancestry controls	8q24.21	NR	rs72725879-T	0.183733525	1E-19		1.2214127	[1.17-1.28]	Affymetrix, Illumina [20400945] (imputed)	N
1562	chr8	128103968	128103969	rs72725879	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	8q24.21	NR	rs72725879-T	NR	1E-90		1.295	[1.26-1.33]	Affymetrix, Illumina [29235255] (imputed)	N
1562	chr8	128103968	128103969	rs72725879	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	8,611 East Asian ancestry cases, 18,809 East Asian ancestry controls	NA	8q24.21	NR	rs72725879-T	0.64	9E-29		1.708	[1.55-1.88]	Affymetrix, Illumina [10186136] (imputed)	N
1562	chr8	128103968	128103969	rs72725879	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	10,368 African ancestry cases, 10,986 African ancestry controls	NA	8q24.21	NR	rs72725879-T	0.341	6E-29		1.308	[1.25-1.37]	Affymetrix, Illumina [18877980] (imputed)	N
1562	chr8	128103968	128103969	rs72725879	32986714	Fiorica PN	2020-09-28	PLoS One	Multi-ethnic transcriptome-wide association study of prostate cancer.	Prostate cancer	2,463 African American or Afro-Caribbean cases, 2,306 African American or Afro-Caribbean controls	NA	8q24.21	LINC01245	rs72725879-?		4E-12		0.297	unit increase	Illumina [15394464] (imputed)	N
1562	chr8	128103968	128103969	rs72725879	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Prostate cancer	5,408 Japanese ancestry cases, 103,939 Japanese ancestry controls	NA	8q24.21		rs72725879-T	0.610643411	3E-107		1.6093928	[1.542595407-1.67908265]	Illumina [8919992] (imputed)	N
1562	chr8	128103968	128103969	rs72725879	26034056	Hoffmann TJ	2015-06-01	Cancer Discov	A large multiethnic genome-wide association study of prostate cancer identifies novel risk variants and substantial ethnic differences.	Prostate cancer	6,406 European ancestry cases, 601 African American cases, 288 East Asian ancestry cases, 488 Latino cases30,866 European ancestry controls, 1,650 African American controls, 2,938 East Asian ancestry controls, 3,141 Latino controls	4,599 European ancestry cases, 2,265 African American cases, 2,940 European ancestry controls, 2,414 African American controls	8q24.21	NR	rs72725879-T	0.667	3E-8	(conditioned, East Asian)	1.92	[1.54-2.44]	Affymetrix [up to 19977088] (imputed)	N
1562	chr8	128104116	128104117	rs183373024	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Illnesses of father: PHESANT recoding (UKB data field 20107_101)	299,733 European ancestry cases, 102,148 European ancestry controls	NA	8q24.21		rs183373024-G	0.005959	5E-9		0.22	[0.15-0.29] unit decrease	NR [11842647] (imputed)	N
1562	chr8	128104116	128104117	rs183373024	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 91,972 European ancestry controls	6,852 European ancestry cases, 193,117 European ancestry controls	8q24.21	NR	rs183373024-G	0.006111072	2E-29		2.4604032	[2.10-2.88]	Affymetrix, Illumina [20400945] (imputed)	N
1562	chr8	128104116	128104117	rs183373024	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	8q24.21	NR	rs183373024-G	NR	1E-80		2.269	[2.09-2.47]	Affymetrix, Illumina [29235255] (imputed)	N
1562	chr8	128104116	128104117	rs183373024	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	8q24.21	NR	rs183373024-G	0.01	4E-160		2.91	[2.69-3.14]	Illumina [20370935] (imputed)	N
1562	chr8	128104217	128104218	rs78809737	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	8q24.21	NR	rs78809737-G	NR	3E-9		1.084	[1.06-1.11]	Affymetrix, Illumina [29235255] (imputed)	N
1562	chr8	128104217	128104218	rs78809737	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)(bidirectional)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	8q24.21		rs78809737-G	NR	8E-13				Affymetrix [7846216] (imputed)	N
1562	chr8	128104342	128104343	rs13254738	22923026	Cheng I	2012-08-24	Cancer Epidemiol Biomarkers Prev	Evaluating genetic risk for prostate cancer among Japanese and Latinos.	Prostate cancer	1,033 Japanese ancestry cases, 1,042 Japanese ancestry controls, 1,043 Latino cases, 1,057 Latino controls	1,583 Japanese ancestry cases, 3,386 Japanese ancestry  controls, 1,854 European ancestry cases, 3,748 European ancestry controls	8q24.21	NR	rs13254738-C	0.54	4E-10	(Japanese)	1.59	[1.38-1.84]	Illumina [528023]	N
1562	chr8	128105186	128105187	rs1073997	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	8q24.21	PRNCR1	rs1073997-C	NR	2E-16		0.0670296	[0.051-0.083] unit decrease	Affymetrix [321788] (imputed)	N
1562	chr8	128106783	128106784	rs12682344	24753544	Knipe DW	2014-04-21	Cancer Epidemiol Biomarkers Prev	Genetic variation in prostate-specific antigen-detected prostate cancer and the effect of control selection on genetic association studies.	Prostate cancer	1,146 European ancestry cases, 1,804 European ancestry controls	1,854 European ancestry cases, 1,437 European ancestry controls	8q24.21	SRRM1P1, POU5F1B	rs12682344-G		5E-12		0.67	[0.48-0.86] unit increase	Illumina [514432] (imputed)	N
1562	chr8	128106879	128106880	rs6983561	26034056	Hoffmann TJ	2015-06-01	Cancer Discov	A large multiethnic genome-wide association study of prostate cancer identifies novel risk variants and substantial ethnic differences.	Prostate cancer	6,406 European ancestry cases, 601 African American cases, 288 East Asian ancestry cases, 488 Latino cases30,866 European ancestry controls, 1,650 African American controls, 2,938 East Asian ancestry controls, 3,141 Latino controls	4,599 European ancestry cases, 2,265 African American cases, 2,940 European ancestry controls, 2,414 African American controls	8q24.21	NR	rs6983561-C	0.035	6E-22		1.45	[1.34-1.56]	Affymetrix [up to 19977088] (imputed)	N
1562	chr8	128106879	128106880	rs6983561	26034056	Hoffmann TJ	2015-06-01	Cancer Discov	A large multiethnic genome-wide association study of prostate cancer identifies novel risk variants and substantial ethnic differences.	Prostate cancer	6,406 European ancestry cases, 601 African American cases, 288 East Asian ancestry cases, 488 Latino cases30,866 European ancestry controls, 1,650 African American controls, 2,938 East Asian ancestry controls, 3,141 Latino controls	4,599 European ancestry cases, 2,265 African American cases, 2,940 European ancestry controls, 2,414 African American controls	8q24.21	NR	rs6983561-C	0.035	5E-19	(European)	1.61	[1.45-1.78]	Affymetrix [up to 19977088] (imputed)	N
1562	chr8	128106879	128106880	rs6983561	22923026	Cheng I	2012-08-24	Cancer Epidemiol Biomarkers Prev	Evaluating genetic risk for prostate cancer among Japanese and Latinos.	Prostate cancer	1,033 Japanese ancestry cases, 1,042 Japanese ancestry controls, 1,043 Latino cases, 1,057 Latino controls	1,583 Japanese ancestry cases, 3,386 Japanese ancestry  controls, 1,854 European ancestry cases, 3,748 European ancestry controls	8q24.21	NR	rs6983561-C	0.18	4E-13	(Japanese)	1.87	[1.58-2.22]	Illumina [528023]	N
1562	chr8	128107100	128107101	rs16901948	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	8q24.21	PRNCR1	rs16901948-A	NR	1E-10		0.0504387	[0.035-0.066] unit decrease	Affymetrix [321016] (imputed)	N
1562	chr8	128108415	128108416	rs4871009	32986714	Fiorica PN	2020-09-28	PLoS One	Multi-ethnic transcriptome-wide association study of prostate cancer.	Prostate cancer	1,106 Japanese American cases, 1,093 Japanese American controls	NA	8q24.21	NR	rs4871009-?		3E-12		0.52	unit increase	Illumina [4623264] (imputed)	N
1562	chr8	128108415	128108416	rs4871009	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Prostate cancer	5,408 Japanese ancestry cases, 103,939 Japanese ancestry controls	NA	8q24.21		rs4871009-T	NR	1E-49		1.4672259	[1.39464026419012-1.54358934452373]	Illumina [8919992] (imputed)	N
1562	chr8	128109929	128109930	rs7830341	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	8q24.21	PCAT1	rs7830341-G	0.964	7E-6	(EA, men)	0.068	[0.039-0.098] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1562	chr8	128113425	128113426	rs56005245	31226226	Du Z	2019-06-21	Int J Cancer	A Genome-wide Association Study of Prostate Cancer in Latinos.	Prostate cancer	2,714 Hispanic or Latin American cases, 5,239 Hispanic or Latin American controls	NA	8q24.21	NR	rs56005245-?	NR	9E-6				Affymetrix, Illumina [10330976] (imputed)	N
1562	chr8	128113425	128113426	rs56005245	27262462	Teerlink CC	2016-06-04	Hum Genet	Genome-wide association of familial prostate cancer cases identifies evidence for a rare segregating haplotype at 8q24.21.	Prostate cancer	2,511 European ancestry cases, 1,382 European ancestry controls	NA	8q24.21	PRNCR1	rs56005245-T	0.225	1E-8		1.41	[1.25-1.59]	Illumina [~ 9400000] (imputed)	N
1562	chr8	128124915	128124916	rs16901979	31562322	Takata R	2019-09-27	Nat Commun	12 new susceptibility loci for prostate cancer identified by genome-wide association study in Japanese population.	Prostate cancer	5,088 Japanese ancestry cases, 10,682 Japanese ancestry controls	4,818 Japanese ancestry cases, 73,261 Japanese ancestry controls	8q24.21	PRNCR1	rs16901979-A	0.188	3E-34		1.4285715	NR	Illumina [7742602] (imputed)	N
1562	chr8	128124915	128124916	rs16901979	26443449	Wang M	2015-10-07	Nat Commun	Large-scale association analysis in Asians identifies new susceptibility loci for prostate cancer.	Prostate cancer	3,000 East Asian ancestry cases, 4,394 East Asian ancestry controls	3,605 East Asian ancestry cases, 3,919 East Asian ancestry controls	8q24.21	POU5F1B	rs16901979-A	NR	1E-16		1.3888888	[NR]	Illumina [4550396] (imputed)	N
1562	chr8	128124915	128124916	rs16901979	25939597	Berndt SI	2015-05-05	Nat Commun	Two susceptibility loci identified for prostate cancer aggressiveness.	Prostate cancer	4,600 European ancestry cases, 2,941 European ancestry controls	7,779 European ancestry cases, 7,623 European ancestry controls	8q24.21	NR	rs16901979-A	0.029	5E-9		1.65	[1.39-1.95]	Illumina [1531807] (imputed)	N
1562	chr8	128124915	128124916	rs16901979	19767754	Gudmundsson J	2009-09-20	Nat Genet	Genome-wide association and replication studies identify four variants associated with prostate cancer susceptibility.	Prostate cancer	Up to 1,968 European ancestry cases, 35,382 European ancestry controls	Up to 11,806 European ancestry cases, 12,387 European ancestry controls	8q24.21	intergenic	rs16901979-A	0.04	3E-14		1.8	[1.55-2.09]	Illumina [310520]	N
1562	chr8	128124915	128124916	rs16901979	17401366	Gudmundsson J	2007-04-01	Nat Genet	Genome-wide association study identifies a second prostate cancer susceptibility variant at 8q24.	Prostate cancer	1,453 European ancestry cases, 3,064 European ancestry controls	1,210 European ancestry cases, 2,445 European ancestry controls, 373 African American cases, 372 African American controls	8q24.21	intergenic	rs16901979-A	0.03	1E-12	(EA)	1.79	[1.53-2.11]	Illumina [316515]	N
1562	chr8	128125194	128125195	rs10505483	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Prostate cancer	7,438 White British ancestry cases, 118,206 White British ancestry controls	NA	8q24.21		rs10505483-?	NR	1E-26		1.54501	[1.47-1.62]	NR [680312]	N
1562	chr8	128125194	128125195	rs10505483	22923026	Cheng I	2012-08-24	Cancer Epidemiol Biomarkers Prev	Evaluating genetic risk for prostate cancer among Japanese and Latinos.	Prostate cancer	1,033 Japanese ancestry cases, 1,042 Japanese ancestry controls, 1,043 Latino cases, 1,057 Latino controls	1,583 Japanese ancestry cases, 3,386 Japanese ancestry  controls, 1,854 European ancestry cases, 3,748 European ancestry controls	8q24.21	NR	rs10505483-T	NR	7E-15	(Japanese and Latin American)	1.73	NR	Illumina [528023]	N
1562	chr8	128131808	128131809	rs116041037	26034056	Hoffmann TJ	2015-06-01	Cancer Discov	A large multiethnic genome-wide association study of prostate cancer identifies novel risk variants and substantial ethnic differences.	Prostate cancer	6,406 European ancestry cases, 601 African American cases, 288 East Asian ancestry cases, 488 Latino cases30,866 European ancestry controls, 1,650 African American controls, 2,938 East Asian ancestry controls, 3,141 Latino controls	4,599 European ancestry cases, 2,265 African American cases, 2,940 European ancestry controls, 2,414 African American controls	8q24.21	NR	rs116041037-A	1.0E-4	6E-10	(African American)	2.67	[1.96-3.64]	Affymetrix [up to 19977088] (imputed)	N
1562	chr8	128151671	128151672	rs17446776	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	8q24.21		rs17446776-G	NR	1E-7		1.2738854	[1.17-1.39]	Affymetrix [7846216] (imputed)	N
1562	chr8	128153319	128153320	rs79012498	34012061	Sipeky C	2021-05-19	Prostate Cancer Prostatic Dis	Novel prostate cancer susceptibility gene SP6 predisposes patients to aggressive disease.	Prostate cancer	2,738 Finnish ancestry cases, 2,400 Finnish ancestry controls	NA	8q24.21	PRNCR1, CASC19	rs79012498-G	0.044	2E-11		1.81	[1.53-2.15] unit increase	Illumina [185478]	N
1562	chr8	128167146	128167147	rs117478964	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	8q24.21	CASC19	rs117478964-G	NR	2E-8		0.0471803	[0.031-0.064] unit decrease	Affymetrix [323858] (imputed)	N
1562	chr8	128175695	128175696	rs735542	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	8q24.21	PRNCR1	rs735542-A	NR	6E-13		1.0728	NR	Affymetrix, Illumina [8278136] (imputed)	N
1562	chr8	128176962	128176963	rs76784613	29356057	Du Z	2018-01-21	Prostate	Genetic risk of prostate cancer in Ugandan men.	Prostate cancer	560 Ugandan ancestry cases, 480 Ugandan ancestry controls	NA	8q24.21	NR	rs76784613-G	0.04	1E-6		2.86	[1.87-4.37]	Illumina [17125421] (imputed)	N
1562	chr8	128181301	128181302	rs2445608	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hypothyroidism	30,155 European ancestry cases, 379,986 European ancestry controls, 1,114 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	8q24.21		rs2445608-A	NR	4E-9		0.0593	[0.04-0.079] unit decrease	Affymetrix, Illumina [25801083] (imputed)	N
1562	chr8	128181806	128181807	rs13266271	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	8q24.21		rs13266271-T	NR	9E-8		1.091703	[1.06-1.13]	Affymetrix [7846216] (imputed)	N
1562	chr8	128183870	128183871	rs191785584	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	8q24.21	CASC19	rs191785584-G	NR	3E-9		0.0514049	[0.034-0.068] unit increase	Affymetrix [319769] (imputed)	N
1562	chr8	128183870	128183871	rs191785584	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	8q24.21	CASC19	rs191785584-G	NR	2E-9		0.052228	[0.035-0.069] unit increase	Affymetrix [319769] (imputed)	N
1562	chr8	128183870	128183871	rs191785584	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	8q24.21	NR	rs191785584-?	NR	4E-10				Affymetrix [~ 8270000] (imputed)	N
1562	chr8	128183870	128183871	rs191785584	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	8q24.21		rs191785584-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1562	chr8	128188018	128188019	rs2466024	24292274	Speedy HE	2013-12-01	Nat Genet	A genome-wide association study identifies multiple susceptibility loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	1,739 European ancestry cases, 5,199 European ancestry controls	1,144 European ancestry cases, 3,151 European ancestry controls	8q24.21	POU5F1B	rs2466024-A	0.41	3E-6		1.21	[NR]	Illumina [450000] (imputed)	N
1563	chr8	128191671	128191672	rs188140481	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Illnesses of father: Prostate cancer (UKB data field 20107_13)	30,487 European ancestry cases, 363,771 European ancestry controls	NA	8q24.21		rs188140481-A	0.005207	8E-25		0.64	[0.52-0.76] unit increase	NR [11842647] (imputed)	N
1563	chr8	128191671	128191672	rs188140481	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	ICD10 C61: Malignant neoplasm of prostate	7,769 European ancestry cases, 201,039 European ancestry controls	NA	8q24.21		rs188140481-A	0.004982	3E-34		1.63	[1.37-1.89] unit increase	NR [11842647] (imputed)	N
1563	chr8	128191671	128191672	rs188140481	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Cancer of prostate (PheCode 185)	5,796 European ancestry cases, 203,012 European ancestry controls	NA	8q24.21		rs188140481-A	0.005057	5E-27		1.66	[1.36-1.96] unit increase	NR [11842647] (imputed)	N
1563	chr8	128191671	128191672	rs188140481	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Cancer code, self-reported: prostate cancer (UKB data field 20001_1044)	3,221 European ancestry cases, 205,547 European ancestry controls	NA	8q24.21		rs188140481-A	0.005168	2E-15		1.63	[1.23-2.03] unit increase	NR [11842647] (imputed)	N
1563	chr8	128191671	128191672	rs188140481	23104005	Gudmundsson J	2012-10-28	Nat Genet	A study based on whole-genome sequencing yields a rare variant at 8q24 associated with prostate cancer.	Prostate cancer	5,141 European ancestry cases, 54,444 European ancestry controls	Up to 5,470 European ancestry cases, up to 7,583 European ancestry controls	8q24.21	HOXB13	rs188140481-A	0.054	6E-34		2.9	[2.44-3.44]	Illumina [~ 32500000] (imputed)	N
1563	chr8	128192980	128192981	rs2456449	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	8q24.21	intergenic	rs2456449-G	0.37	2E-9		1.08		Illumina [161311]	N
1563	chr8	128197087	128197088	rs2445610	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	8q24.21		rs2445610-G	NR	3E-16		0.073	[0.056-0.09] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1563	chr8	128197087	128197088	rs2445610	33536424	Wang YF	2021-02-03	Nat Commun	Identification of 38 novel loci for systemic lupus erythematosus and genetic heterogeneity between ancestral groups.	Systemic lupus erythematosus	4,222 Han Chinese ancestry cases, 8,431 Han Chinese ancestry controls, 4,576 European ancestry cases, 8,039 European ancestry controls	NA	8q24.21	PRNCR1, CASC19	rs2445610-G	NR	3E-7		0.91	[0.87-0.95]	Illumina [NR] (imputed)	N
1563	chr8	128197087	128197088	rs2445610	33536424	Wang YF	2021-02-03	Nat Commun	Identification of 38 novel loci for systemic lupus erythematosus and genetic heterogeneity between ancestral groups.	Systemic lupus erythematosus	4,222 Han Chinese ancestry cases, 8,431 Han Chinese ancestry controls	NA	8q24.21	PRNCR1, CASC19	rs2445610-G	NR	5E-8		0.886	[0.84-0.93]	Illumina [5719137] (imputed)	N
1563	chr8	128197087	128197088	rs2445610	32581359	Saevarsdottir S	2020-06-24	Nature	FLT3 stop mutation increases FLT3 ligand level and risk of autoimmune thyroid disease.	Autoimmune thyroid disease	30,234 European ancestry cases, 724,172 European ancestry controls	NA	8q24.21	NR	rs2445610-A	0.633	1E-15		1.0752687	[NR]	Affymetrix, Illumina [42900000] (imputed)	N
1563	chr8	128197087	128197088	rs2445610	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	8q24.21	RP11-255B23.4	rs2445610-G	0.36907	1E-13		0.0699895	[0.052-0.088] unit decrease	Affymetrix [7288503] (imputed)	N
1563	chr8	128197087	128197088	rs2445610	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	8q24.21		rs2445610-?	NR	7E-14				NR [~ 8900000] (imputed)	N
1563	chr8	128198563	128198564	rs12678349	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Prostate cancer	10,792 European ancestry cases, 410,350 European ancestry controls	NA	8q24.21		rs12678349-C	NR	5E-8		1.1578	NR	Affymetrix [7846216] (imputed)	N
1563	chr8	128200555	128200556	rs2466028	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Graves' disease	1,678 European ancestry cases, 456,942 European ancestry controls, 2,809 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	8q24.21		rs2466028-C	NR	6E-10		0.145	[0.099-0.191] unit decrease	Affymetrix, Illumina [25841587] (imputed)	N
1563	chr8	128200970	128200971	rs2466029	28165464	Law PJ	2017-02-06	Nat Commun	Genome-wide association analysis implicates dysregulation of immunity genes in chronic lymphocytic leukaemia.	Chronic lymphocytic leukemia	4,478 European ancestry cases and 13,213 European ancestry controls.	1,722 European ancestry cases and 4,385 European ancestry controls.	8q24.21	POU5F1B	rs2466029-G	NR	7E-16		1.23	[1.17-1.3]	Affymetrix, Illumina [> 10000000] (imputed)	N
1563	chr8	128203025	128203025	rs10673095	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Graves' disease	2,176 Japanese ancestry cases, 210,277 Japanese ancestry controls	NA	8q24.21		rs10673095-TTC	0.347099987	2E-9		0.81347036	[0.760330701-0.870324013]	Illumina [8919992] (imputed)	N
1563	chr8	128208368	128208369	rs138042437	27262462	Teerlink CC	2016-06-04	Hum Genet	Genome-wide association of familial prostate cancer cases identifies evidence for a rare segregating haplotype at 8q24.21.	Prostate cancer	2,511 European ancestry cases, 1,382 European ancestry controls	NA	8q24.21	CASC19	rs138042437-G	0.015	2E-8		13.25	[5.37-32.69]	Illumina [~ 9400000] (imputed)	N
1563	chr8	128210665	128210666	rs1378902	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Graves' disease	2,809 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	8q24.21		rs1378902-A	0.341845351	1E-9		0.17999995	[0.12-0.24] unit decrease	Illumina [13429311] (imputed)	N
1563	chr8	128211228	128211229	rs2466035	23770605	Berndt SI	2013-06-16	Nat Genet	Genome-wide association study identifies multiple risk loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	2,179 European ancestry cases, 6,221 European ancestry controls	1,709 European ancestry cases, 6,318 European ancestry controls	8q24.21	MYC	rs2466035-C	0.31	2E-8		1.21	[NR]	Illumina [549934]	N
1563	chr8	128216485	128216486	rs10086049	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	8q24.21		rs10086049-T	NR	4E-6		8.9981	[5.25-12.75] unit increase	Illumina [NR] (imputed)	N
1563	chr8	128222420	128222421	rs1948915	27363682	Mitchell JS	2016-07-01	Nat Commun	Genome-wide association study identifies multiple susceptibility loci for multiple myeloma.	Multiple myeloma	7,319 European ancestry cases, 234,385 European ancestry controls	2,547 European ancestry cases, 4,803 European ancestry controls	8q24.21	CCAT1	rs1948915-C	0.345	4E-11		1.13	[NR]	Illumina [at least 7182761] (imputed)	N
1563	chr8	128243373	128243374	rs142952384	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	8q24.21	CCAT1	rs142952384-G	NR	4E-11		0.0937802	[0.066-0.122] unit decrease	Affymetrix [321788] (imputed)	N
1563	chr8	128250569	128250570	rs11995647	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	8q24.21	CCAT1	rs11995647-G	NR	9E-9		0.0573316	[0.038-0.077] unit decrease	Affymetrix [321788] (imputed)	N
1563	chr8	128277638	128277639	rs16902056	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota (alpha diversity)	858 Metropolitan French ancestry individuals	NA	8q24.21	NR	rs16902056-?	NR	8E-6	(Chao1 richness estimate)	0.882806	[0.5-1.27] unit increase	Illumina [5293637] (imputed)	N
1563	chr8	128281707	128281708	rs1962471	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	8q24.21	NR	rs1962471-?	NR	4E-7				Affymetrix [NR]	N
1563	chr8	128298210	128298211	rs6980979	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	8q24.21	CASC8	rs6980979-C	NR	3E-8		0.0180604	[0.012-0.024] unit decrease	Affymetrix [319769] (imputed)	N
1563	chr8	128308917	128308917	rs5894878	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	8q24.21	CASC8	rs5894878-GA	NR	5E-8		0.0213069	[0.014-0.029] unit decrease	Affymetrix [319769] (imputed)	N
1563	chr8	128309590	128309591	rs12549518	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	8q24.21	CASC8	rs12549518-A	NR	9E-11		0.0185114	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
1563	chr8	128309590	128309591	rs12549518	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	8q24.21	CASC8	rs12549518-A	NR	8E-11		0.0185795	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
1563	chr8	128314515	128314516	rs4871015	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	8q24.21	NR	rs4871015-A	0.581491	5E-8		0.0044581	[0.0028-0.0061] unit increase	Affymetrix [16582909] (imputed)	N
1563	chr8	128314515	128314516	rs4871015	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	8q24.21	NR	rs4871015-A	0.581492	5E-10		0.00787936	[0.0054-0.0104] unit increase	Affymetrix [16585854] (imputed)	N
1563	chr8	128314515	128314516	rs4871015	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	8q24.21	NR	rs4871015-A	0.581491	2E-6		0.00439073	[0.0025-0.0063] unit increase	Affymetrix [16582965] (imputed)	N
1563	chr8	128314515	128314516	rs4871015	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	8q24.21	NR	rs4871015-A	0.581492	4E-6		0.00692993	[0.0041-0.0098] unit increase	Affymetrix [16585866] (imputed)	N
1564	chr8	128320345	128320346	rs16902094	19767754	Gudmundsson J	2009-09-20	Nat Genet	Genome-wide association and replication studies identify four variants associated with prostate cancer susceptibility.	Prostate cancer	Up to 1,968 European ancestry cases, 35,382 European ancestry controls	Up to 11,806 European ancestry cases, 12,387 European ancestry controls	8q24.21	intergenic	rs16902094-G	0.15	6E-15		1.21	[1.15-1.26]	Illumina [310520]	N
1564	chr8	128321201	128321202	rs7838810	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8q24.21	CASC8	rs7838810-C	NR	4E-12		0.0208753	[0.015-0.027] unit decrease	Affymetrix [321114] (imputed)	N
1564	chr8	128321201	128321202	rs7838810	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	8q24.21	CASC8	rs7838810-C	NR	7E-13		0.0215809	[0.016-0.027] unit decrease	Affymetrix [321169] (imputed)	N
1564	chr8	128323180	128323181	rs445114	21743057	Schumacher FR	2011-07-08	Hum Mol Genet	Genome-wide association study identifies new prostate cancer susceptibility loci.	Prostate cancer	2,782 European ancestry cases, 4,458 European ancestry controls	7,358 European ancestry cases, 6,732 European ancestry controls	8q24.21	intergenic	rs445114-T	NR	5E-7		1.22	[1.12-1.32]	Illumina [571243]	N
1564	chr8	128323180	128323181	rs445114	19767754	Gudmundsson J	2009-09-20	Nat Genet	Genome-wide association and replication studies identify four variants associated with prostate cancer susceptibility.	Prostate cancer	Up to 1,968 European ancestry cases, 35,382 European ancestry controls	Up to 11,806 European ancestry cases, 12,387 European ancestry controls	8q24.21	intergenic	rs445114-T	0.64	5E-10		1.14	[1.10-1.19]	Illumina [310520]	N
1564	chr8	128323818	128323819	rs378854	28430825	Ng MCY	2017-04-21	PLoS Genet	Discovery and fine-mapping of adiposity loci using high density imputation of genome-wide association studies in individuals of African ancestry: African Ancestry Anthropometry Genetics Consortium.	Waist-to-hip ratio adjusted for body mass index	4,783 African American men, 15,601 African American women	981 African American men, 1,730 African American women, 104,079 European ancestry men, 116,742 European ancestry women	8q24.21	CASC8	rs378854-C	0.787	3E-9	(Women)	0.06	[0.033-0.087] unit increase	Affymetrix, Illumina [20502658] (imputed)	N
1564	chr8	128323890	128323891	rs4506170	27262462	Teerlink CC	2016-06-04	Hum Genet	Genome-wide association of familial prostate cancer cases identifies evidence for a rare segregating haplotype at 8q24.21.	Prostate cancer	2,511 European ancestry cases, 1,382 European ancestry controls	NA	8q24.21	CASC8, CASC21	rs4506170-C	0.166	2E-9		1.51	[1.32-1.73]	Illumina [~ 9400000] (imputed)	N
1564	chr8	128324074	128324075	rs144898130	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	8q24.21		rs144898130-T	NR	2E-19		1.1918951	[1.15-1.24]	Affymetrix [7846216] (imputed)	N
1564	chr8	128334244	128334245	rs366991	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	8q24.21	NR	rs366991-?	NR	1E-18				Affymetrix [~ 8270000] (imputed)	N
1564	chr8	128334244	128334245	rs366991	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	8q24.21	NR	rs366991-?	NR	5E-9				Affymetrix [~ 8270000] (imputed)	N
1564	chr8	128334899	128334900	rs13256367	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	8q24.21	NR	rs13256367-A	0.65	2E-20		0.018	[0.014-0.022] unit increase	Affymetrix [2446094] (imputed)	N
1564	chr8	128334899	128334900	rs13256367	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	8q24.21	NR	rs13256367-A	0.65	5E-8				Affymetrix [2446094] (imputed)	N
1564	chr8	128334899	128334900	rs13256367	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	8q24.21	NR	rs13256367-A	0.6535	6E-22		0.0182	[0.014-0.022] unit increase	NR [~ 27400000] (imputed)	N
1564	chr8	128334899	128334900	rs13256367	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	8q24.21	NA	rs13256367-A	0.6534	5E-14		0.0141	[0.01-0.018] unit increase	NR [~ 27400000] (imputed)	N
1564	chr8	128334899	128334900	rs13256367	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	8q24.21	NR	rs13256367-A	0.6534	5E-14		0.0141	[0.01-0.018] unit increase	NR [~ 27400000] (imputed)	N
1564	chr8	128335525	128335526	rs62516012	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)(bidirectional)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	8q24.21		rs62516012-C	NR	7E-28				Affymetrix [7846216] (imputed)	N
1564	chr8	128335672	128335673	rs620861	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	8q24.21		rs620861-?	NR	6E-17				NR [~ 8900000] (imputed)	N
1564	chr8	128335713	128335714	rs620808	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	8q24.21	CASC8	rs620808-C	NR	1E-15		0.0225445	[0.017-0.028] unit increase	Affymetrix [319769] (imputed)	N
1564	chr8	128335713	128335714	rs620808	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	8q24.21	CASC8	rs620808-C	NR	1E-15		0.0225568	[0.017-0.028] unit increase	Affymetrix [319769] (imputed)	N
1564	chr8	128337277	128337278	rs442889	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	8q24.21	CASC8	rs442889-T	NR	3E-17		0.0250195	[0.019-0.031] unit decrease	Affymetrix [319769] (imputed)	N
1564	chr8	128337277	128337278	rs442889	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	8q24.21	CASC8	rs442889-T	NR	1E-17		0.0252839	[0.019-0.031] unit decrease	Affymetrix [319769] (imputed)	N
1564	chr8	128340907	128340908	rs16902104	26034056	Hoffmann TJ	2015-06-01	Cancer Discov	A large multiethnic genome-wide association study of prostate cancer identifies novel risk variants and substantial ethnic differences.	Prostate cancer	6,406 European ancestry cases, 601 African American cases, 288 East Asian ancestry cases, 488 Latino cases30,866 European ancestry controls, 1,650 African American controls, 2,938 East Asian ancestry controls, 3,141 Latino controls	4,599 European ancestry cases, 2,265 African American cases, 2,940 European ancestry controls, 2,414 African American controls	8q24.21	NR	rs16902104-T	0.14	5E-10	(European)	1.21	[1.14-1.28]	Affymetrix [up to 19977088] (imputed)	N
1564	chr8	128340907	128340908	rs16902104	26034056	Hoffmann TJ	2015-06-01	Cancer Discov	A large multiethnic genome-wide association study of prostate cancer identifies novel risk variants and substantial ethnic differences.	Prostate cancer	6,406 European ancestry cases, 601 African American cases, 288 East Asian ancestry cases, 488 Latino cases30,866 European ancestry controls, 1,650 African American controls, 2,938 East Asian ancestry controls, 3,141 Latino controls	4,599 European ancestry cases, 2,265 African American cases, 2,940 European ancestry controls, 2,414 African American controls	8q24.21	NR	rs16902104-T	0.14	1E-9		1.18	[1.12-1.25]	Affymetrix [up to 19977088] (imputed)	N
1564	chr8	128341679	128341680	rs587948	34012061	Sipeky C	2021-05-19	Prostate Cancer Prostatic Dis	Novel prostate cancer susceptibility gene SP6 predisposes patients to aggressive disease.	Prostate cancer	2,738 Finnish ancestry cases, 2,400 Finnish ancestry controls	NA	8q24.21	CASC8	rs587948-C	0.39	3E-8		0.8	[0.74-0.87] unit decrease	Illumina [185478]	N
1564	chr8	128342865	128342866	rs17464492	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 91,972 European ancestry controls	6,852 European ancestry cases, 193,117 European ancestry controls	8q24.21	NR	rs17464492-A	0.713512738	4E-17		1.1832399	[1.14-1.23]	Affymetrix, Illumina [20400945] (imputed)	N
1564	chr8	128342865	128342866	rs17464492	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	8q24.21	NR	rs17464492-A	NR	4E-48		1.118	[1.10-1.13]	Affymetrix, Illumina [29235255] (imputed)	N
1564	chr8	128342865	128342866	rs17464492	28139693	Hoffmann TJ	2017-01-31	Nat Commun	Genome-wide association study of prostate-specific antigen levels identifies novel loci independent of prostate cancer.	Prostate-specific antigen levels (conditioned on lead SNPs)	28,503 European ancestry individuals	2,716 Latino individuals, 2,518 East Asian ancestry individuals, 1,585 African American individuals, 6,193 European ancestry individuals (later diagnosed with prostate cancer)	8q24.21	MYC	rs17464492-?	0.71	2E-10	(conditional on Round 1 SNPs)	0.04	unit increase	Affymetrix [10109774] (imputed)	N
1564	chr8	128343340	128343341	rs35603878	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	8q24.21	CASC8	rs35603878-C	NR	5E-8		0.0190732	[0.012-0.026] unit decrease	Affymetrix [321169] (imputed)	N
1564	chr8	128350707	128350708	rs35131928	34951656	Downie CG	2021-12-24	Diabetologia	Multi-ethnic GWAS and fine-mapping of glycaemic traits identify novel loci in the PAGE Study.	Glycated haemoglobin HbA1c levels adjusted for BMI	9,228 European ancestry individuals	NA	8q24.21		rs35131928-CA	0.4	3E-8		0.0575	[0.037-0.078] unit increase	Affymetrix, Illumina [23060038] (imputed)	N
1564	chr8	128350707	128350708	rs35131928	34951656	Downie CG	2021-12-24	Diabetologia	Multi-ethnic GWAS and fine-mapping of glycaemic traits identify novel loci in the PAGE Study.	Fasting insulin adjusted for BMI	48,395 European ancestry, African American or Afro-Caribbean, Hispanic or Latin American, Asian ancestry, Other ancestry, Native American ancestry individuals	NA	8q24.21		rs35131928-CA	0.43	3E-9		0.0398	[0.027-0.053] unit increase	Affymetrix, Illumina [28462191] (imputed)	N
1564	chr8	128350707	128350707	rs747171037	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Breast cancer	17,881 European ancestry cases, 410,350 European ancestry controls	NA	8q24.21		rs747171037-C	NR	5E-20		1.1087704	NR	Affymetrix [7846216] (imputed)	N
1564	chr8	128355617	128355618	rs13281615	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Breast cancer	10,682 White British ancestry cases, 138,504 White British ancestry controls	NA	8q24.21		rs13281615-?	NR	3E-9		1.08956	[1.06-1.12]	NR [682398]	N
1564	chr8	128355617	128355618	rs13281615	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	8q24.21		rs13281615-A	NR	2E-55		0.91	[0.9-0.92]	Affymetrix, Illumina [NR] (imputed)	N
1564	chr8	128355617	128355618	rs13281615	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	8q24.21	intergenic	rs13281615-G	0.41	2E-57	(EA)	1.11	[1.09-1.13] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
1564	chr8	128355617	128355618	rs13281615	29058716	Milne RL	2017-10-23	Nat Genet	Identification of ten variants associated with risk of estrogen-receptor-negative breast cancer.	Breast cancer (estrogen-receptor negative)	14,135 European ancestry cases, 58,126 European ancestry controls	7,333 European ancestry cases, 42,468 European ancestry controls	8q24.21	NR	rs13281615-G	0.41	9E-6		1.07	[1.03-1.10] (Oncoarray)	Illumina [~ 11500000] (imputed)	N
1564	chr8	128355617	128355618	rs13281615	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	46,785 European ancestry cases, 42,892 European ancestry controls	NA	8q24.21	NR	rs13281615-G	0.4	3E-22		1.1	[1.08-1.12]	Affymetrix, Illumina [~ 14000000] (imputed)	N
1564	chr8	128355617	128355618	rs13281615	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	15,748 European ancestry cases, 18,084 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls	8q24.21	NR	rs13281615-G	0.4	6E-31		1.1	[1.08-1.12]	Affymetrix, Illumina [~ 11600000] (imputed)	N
1564	chr8	128355617	128355618	rs13281615	23535729	Michailidou K	2013-04-01	Nat Genet	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	8q24.21	intergenic	rs13281615-G	0.41	1E-27		1.09	[1.07-1.12]	Affymetrix, Illumina [~ 2600000] (imputed)	N
1564	chr8	128355617	128355618	rs13281615	17529967	Easton DF	2007-05-27	Nature	Genome-wide association study identifies novel breast cancer susceptibility loci.	Breast cancer	390 European ancestry cases, 364 European ancestry controls	4,364 East Asian ancestry cases, 24,174 European ancestry controls, 3,564 East Asian ancestry controls, 24,391 European ancestry controls	8q24.21	intergenic	rs13281615-C	0.40	5E-12		1.08	[1.05-1.11]	Perlegen [205586]	N
1564	chr8	128357816	128357817	rs13267780	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	8q24.21	CASC8, RP11-382A18.2	rs13267780-A	NR	4E-10		0.0203806	[0.014-0.027] unit decrease	Affymetrix [319769] (imputed)	N
1564	chr8	128357816	128357817	rs13267780	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	8q24.21	CASC8, RP11-382A18.2	rs13267780-A	NR	6E-10		0.0202505	[0.014-0.027] unit decrease	Affymetrix [319769] (imputed)	N
1564	chr8	128357923	128357924	rs10447995	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Breast cancer	17,389 European ancestry cases, 240,341 European ancestry controls, 6,325 East Asian ancestry cases, 73,225 East Asian ancestry controls	NA	8q24.21		rs10447995-A	NR	1E-22		0.1002	[0.08-0.12] unit increase	Affymetrix, Illumina [25794640] (imputed)	N
1564	chr8	128367509	128367510	rs113661590	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	8q24.21		rs113661590-G	NR	1E-8		1.104	[1.067-1.142]	Affymetrix [7846216] (imputed)	N
1564	chr8	128370270	128370271	rs35112951	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	8q24.21	CASC8, RP11-382A18.2	rs35112951-A	NR	2E-11		0.0196447	[0.014-0.025] unit decrease	Affymetrix [319769] (imputed)	N
1564	chr8	128370270	128370271	rs35112951	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	8q24.21	CASC8, RP11-382A18.2	rs35112951-A	NR	3E-11		0.0195267	[0.014-0.025] unit decrease	Affymetrix [319769] (imputed)	N
1564	chr8	128370270	128370271	rs35112951	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8q24.21	CASC8, RP11-382A18.2	rs35112951-A	NR	4E-9		0.0174184	[0.012-0.023] unit decrease	Affymetrix [321114] (imputed)	N
1564	chr8	128370270	128370271	rs35112951	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	8q24.21	CASC8, RP11-382A18.2	rs35112951-A	NR	1E-9		0.0180963	[0.012-0.024] unit decrease	Affymetrix [321169] (imputed)	N
1564	chr8	128372171	128372172	rs10096351	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	8q24.21	NR	rs10096351-G	0.5441	2E-64	(EA)	0.1055	[0.093-0.118] unit increase	Illumina [~ 11800000] (imputed)	N
1564	chr8	128376925	128376926	rs7835046	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	8q24.21	CASC8, RP11-382A18.2	rs7835046-C	NR	1E-8		0.0175724	[0.012-0.024] unit decrease	Affymetrix [321169] (imputed)	N
1564	chr8	128377773	128377774	rs9692890	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	8q24.21	CASC8, RP11-382A18.2	rs9692890-A	NR	1E-12		0.0205626	[0.015-0.026] unit increase	Affymetrix [319769] (imputed)	N
1564	chr8	128377773	128377774	rs9692890	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	8q24.21	CASC8, RP11-382A18.2	rs9692890-A	NR	3E-12		0.020254	[0.015-0.026] unit increase	Affymetrix [319769] (imputed)	N
1564	chr8	128377773	128377774	rs9692890	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	8q24.21	CASC8, RP11-382A18.2	rs9692890-A	NR	4E-9		0.0171484	[0.011-0.023] unit increase	Affymetrix [321169] (imputed)	N
1564	chr8	128380383	128380384	rs146836668	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	8q24.21		rs146836668-A	NR	7E-14		1.510574	[1.36-1.68]	Affymetrix [7846216] (imputed)	N
1564	chr8	128383414	128383415	rs117952826	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)(bidirectional)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	8q24.21		rs117952826-C	NR	1E-8				Affymetrix [7846216] (imputed)	N
1564	chr8	128386266	128386267	rs116846195	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	8q24.21		rs116846195-A	NR	4E-9		1.4992503	[1.31-1.72]	Affymetrix [7846216] (imputed)	N
1564	chr8	128387851	128387852	rs1562430	21263130	Fletcher O	2011-01-24	J Natl Cancer Inst	Novel breast cancer susceptibility locus at 9q31.2: results of a genome-wide association study.	Breast cancer	2,839 European ancestry cases, 3,507 European ancestry controls	9,041 European ancestry cases, 8,980 European ancestry controls	8q24.21	intergenic	rs1562430-A	0.60	3E-11		1.16	[1.11-1.22]	Illumina [~ 296114]	N
1564	chr8	128387851	128387852	rs1562430	20453838	Turnbull C	2010-05-09	Nat Genet	Genome-wide association study identifies five new breast cancer susceptibility loci.	Breast cancer	3,659 European ancestry cases, 4,897 European ancestry controls	12,576 European ancestry cases, 12,223 European ancestry controls	8q24.21	intergenic	rs1562430-T	0.58	6E-7		1.17	[1.10-1.25]	Illumina [582886]	N
1564	chr8	128388024	128388025	rs2392780	24493630	Ahsan H	2014-02-03	Cancer Epidemiol Biomarkers Prev	A genome-wide association study of early-onset breast cancer identifies PFKM as a novel breast cancer gene and supports a common genetic spectrum for breast cancer at any age.	Breast cancer (early onset)	3,523 European ancestry young female cases, 2,702 European ancestry young female controls	3,470 European ancestry young female cases, 5,475 European ancestry young female controls	8q24.21	intergenic	rs2392780-?	0.6	1E-8		1.15	[1.10-1.20]	Illumina [1265548] (imputed)	N
1564	chr8	128391411	128391412	rs62516032	33290408	Ray D	2020-12-08	PLoS Genet	A powerful method for pleiotropic analysis under composite null hypothesis identifies novel shared loci between Type 2 Diabetes and Prostate Cancer.	Type 2 diabetes or prostate cancer (pleiotropy)	62,892 European ancestry T2D cases, 79,194 European ancestry PrCa cases, 659,536 European ancestry controls	NA	8q24.21	CASC8	rs62516032-?		7E-11				Illumina [5041948] (imputed)	N
1564	chr8	128405071	128405072	rs16902147	34012061	Sipeky C	2021-05-19	Prostate Cancer Prostatic Dis	Novel prostate cancer susceptibility gene SP6 predisposes patients to aggressive disease.	Prostate cancer	2,738 Finnish ancestry cases, 2,400 Finnish ancestry controls	NA	8q24.21	CASC8	rs16902147-C	0.04	1E-11		1.86	[1.56-2.23] unit increase	Illumina [185478]	N
1564	chr8	128407442	128407443	rs10505477	34671089	Hikino K	2021-10-21	J Hum Genet	Genome-wide association study of colorectal polyps identified highly overlapping polygenic architecture with colorectal cancer.	Colorectal cancer	6,845 East Asian ancestry cases, 80,764 East Asian ancestry controls	NA	8q24.21		rs10505477-?	NR	1E-22		0.83	[0.8-0.86]	Illumina [NR] (imputed)	N
1564	chr8	128407442	128407443	rs10505477	34012061	Sipeky C	2021-05-19	Prostate Cancer Prostatic Dis	Novel prostate cancer susceptibility gene SP6 predisposes patients to aggressive disease.	Prostate cancer	2,738 Finnish ancestry cases, 2,400 Finnish ancestry controls	NA	8q24.21	CASC8	rs10505477-G	0.53	6E-14		0.74	[0.69-0.80] unit decrease	Illumina [185478]	N
1564	chr8	128407442	128407443	rs10505477	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Prostate cancer	10,792 European ancestry cases, 410,350 European ancestry controls	NA	8q24.21		rs10505477-A	NR	8E-61		1.271	NR	Affymetrix [7846216] (imputed)	N
1564	chr8	128407442	128407443	rs10505477	28960316	Tanskanen T	2017-09-28	Int J Cancer	Genome-wide association study and meta-analysis in Northern European populations replicate multiple colorectal cancer risk loci.	Colorectal cancer	1,701 Finnish ancestry cases, 14,082 Finnish ancestry controls	11,647 European ancestry cases, 12,356 European ancestry controls	8q24.21	LOC101930033, CCAT2	rs10505477-A	NR	3E-22		1.19	[1.15-1.23]	Illumina [9068015] (imputed)	N
1564	chr8	128407442	128407443	rs10505477	28139693	Hoffmann TJ	2017-01-31	Nat Commun	Genome-wide association study of prostate-specific antigen levels identifies novel loci independent of prostate cancer.	Prostate-specific antigen levels	28,503 European ancestry individuals	2,716 Latino individuals, 2,518 East Asian ancestry individuals, 1,585 African American individuals, 6,193 European ancestry individuals (later diagnosed with prostate cancer), 5,603 European ancestry individuals	8q24.21	MYC	rs10505477-A	0.49	7E-21		0.0525797	[0.042-0.064] unit increase	Affymetrix [10109774] (imputed)	N
1564	chr8	128407442	128407443	rs10505477	26965516	Zeng C	2016-03-08	Gastroenterology	Identification of Susceptibility Loci and Genes for Colorectal Cancer Risk.	Colorectal cancer	4,508 East Asian ancestry cases, 16,588 East Asian ancestry controls	11,044 East Asian ancestry cases, 18,036 East Asian ancestry controls	8q24.21	NR	rs10505477-A	0.38	3E-13		1.15	[1.11-1.20]	Affymetrix, Illumina [~ 4000000] (imputed)	N
1564	chr8	128407442	128407443	rs10505477	24740154	Lange EM	2014-04-16	PLoS One	Genome-wide association scan for variants associated with early-onset prostate cancer.	Prostate cancer (early onset)	931 European ancestry cases, 4,120 European ancestry controls	2,571 European ancestry cases, 921 European ancestry controls	8q24.21	MYC	rs10505477-A	0.49	9E-9		1.39	[1.28-1.50]	Illumina [2639562] (imputed)	N
1564	chr8	128407442	128407443	rs10505477	24737748	Whiffin N	2014-04-15	Hum Mol Genet	Identification of susceptibility loci for colorectal cancer in a genome-wide meta-analysis.	Colorectal cancer	5,626 European ancestry cases, 7,817 European ancestry controls	14,037 European ancestry cases, 15,937 European ancestry controls	8q24.21	MYC	rs10505477-T	0.54	8E-13		1.198	[NR]	Illumina [NR] (imputed)	N
1564	chr8	128407442	128407443	rs10505477	17618283	Zanke BW	2007-07-08	Nat Genet	Genome-wide association scan identifies a colorectal cancer susceptibility locus on chromosome 8q24.	Colorectal cancer	1,257 cases, 1,336 controls	5,084 European ancestry cases, 5,388 European ancestry controls, 1,139 cases, 1,055 controls	8q24.21	ORF DQ515897	rs10505477-A	0.50	3E-11		1.17	[1.12-1.23]	Affymetrix, Illumina [99632]	N
1564	chr8	128408060	128408061	rs58809953	34012061	Sipeky C	2021-05-19	Prostate Cancer Prostatic Dis	Novel prostate cancer susceptibility gene SP6 predisposes patients to aggressive disease.	Prostate cancer	2,738 Finnish ancestry cases, 2,400 Finnish ancestry controls	NA	8q24.21	CASC8	rs58809953-A	0.04	3E-9		1.71	[1.43-2.04] unit increase	Illumina [185478]	N
1564	chr8	128410947	128410948	rs12682374	29471430	Tanikawa C	2018-02-17	Carcinogenesis	GWAS Identifies Two Novel Colorectal Cancer Loci at 16q24.1 and 20q13.12.	Colorectal cancer	6,692 Japanese ancestry cases, 27,178 Japanese ancestry controls	3,713 Japanese ancestry cases, 7,333 Japanese ancestry controls	8q24.21	NR	rs12682374-C	NR	7E-29		1.2033695	[1.16-1.24]	Illumina [6774630] (imputed)	N
1564	chr8	128413146	128413147	rs10808556	34671089	Hikino K	2021-10-21	J Hum Genet	Genome-wide association study of colorectal polyps identified highly overlapping polygenic architecture with colorectal cancer.	Colorectal polyp and colorectal cancer (MTAG)	11,292 East Asian ancestry cases, 237,990 East Asian ancestry controls	NA	8q24.21		rs10808556-?	NR	2E-22	(Colorectal polyp)	0.88	[0.86-0.9]	Illumina [NR] (imputed)	N
1564	chr8	128413304	128413305	rs6983267	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Colorectal cancer	6,581 European ancestry cases, 463,421 European ancestry controls, 8,305 East Asian ancestry cases, 159,386 East Asian ancestry controls	NA	8q24.21		rs6983267-T	NR	2E-35		0.1552	[0.13-0.18] unit decrease	Affymetrix, Illumina [25843452] (imputed)	N
1564	chr8	128413304	128413305	rs6983267	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Colon polyp	22,049 European ancestry cases, 332,368 European ancestry controls, 4,768 East Asian ancestry cases, 166,052 East Asian ancestry controls	NA	8q24.21		rs6983267-T	NR	2E-17		0.0788	[0.061-0.097] unit decrease	Affymetrix, Illumina [20457468] (imputed)	N
1564	chr8	128413304	128413305	rs6983267	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Prostate cancer	7,438 White British ancestry cases, 118,206 White British ancestry controls	NA	8q24.21		rs6983267-?	NR	4E-42		0.789493	[0.76-0.82]	NR [680312]	N
1564	chr8	128413304	128413305	rs6983267	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Colorectal cancer	3,351 White British ancestry cases, 271,479 White British ancestry controls	NA	8q24.21		rs6983267-?	NR	1E-9		0.86065	[0.81-0.91]	NR [675173]	N
1564	chr8	128413304	128413305	rs6983267	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Cancer	56,634 White British ancestry cases, 218,196 White British ancestry controls	NA	8q24.21		rs6983267-?	NR	1E-9		0.959149	[0.95-0.97]	NR [688737]	N
1564	chr8	128413304	128413305	rs6983267	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 91,972 European ancestry controls	6,852 European ancestry cases, 193,117 European ancestry controls	8q24.21	NR	rs6983267-G	0.51929402	5E-28		1.2091146	[1.17-1.25]	Affymetrix, Illumina [20400945] (imputed)	N
1564	chr8	128413304	128413305	rs6983267	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	8q24.21	NR	rs6983267-G	NR	1E-113		1.171	[1.16-1.19]	Affymetrix, Illumina [29235255] (imputed)	N
1564	chr8	128413304	128413305	rs6983267	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	8,611 East Asian ancestry cases, 18,809 East Asian ancestry controls	NA	8q24.21	NR	rs6983267-G	0.366	3E-13		1.148	[1.11-1.19]	Affymetrix, Illumina [10186136] (imputed)	N
1564	chr8	128413304	128413305	rs6983267	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	2,714 Hispanic cases, 5,239 Hispanic controls	NA	8q24.21	NR	rs6983267-G	0.603	2E-6		1.21	[1.12-1.31]	Affymetrix, Illumina [11334207] (imputed)	N
1564	chr8	128413304	128413305	rs6983267	33293427	Emami NC	2020-12-08	Cancer Res	A large-scale association study detects novel rare variants, risk genes, functional elements, and polygenic architecture of prostate cancer susceptibility.	Prostate cancer	14,113 European ancestry cases, 194,140 European ancestry controls	NA	8q24.21	NR	rs6983267-G	NR	1E-52		1.24	NR	Affymetrix [at least 232408] (imputed)	N
1564	chr8	128413304	128413305	rs6983267	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Rectal cancer	2,091 European ancestry cases, 410,350 European ancestry controls	NA	8q24.21		rs6983267-G	NR	5E-10		1.2151	NR	Affymetrix [7846216] (imputed)	N
1564	chr8	128413304	128413305	rs6983267	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	8q24.21		rs6983267-G	NR	8E-74		1.239	[1.211-1.268]	Affymetrix [7846216] (imputed)	N
1564	chr8	128413304	128413305	rs6983267	31826910	Lu Y	2019-12-11	Cancer Epidemiol Biomarkers Prev	Identification of novel loci and new risk variant in known loci for colorectal cancer risk in East Asians.	Colorectal cancer	23,572 East Asian ancestry cases, 48,700 East Asian ancestry controls	58,131 European ancestry cases, 67,347 European ancestry controls	8q24.21	POU5F1B	rs6983267-G	NR	3E-33	(East Asian)	1.17	[1.14-1.19]	Affymetrix, Illumina [up to 47000000] (imputed)	N
1564	chr8	128413304	128413305	rs6983267	31562322	Takata R	2019-09-27	Nat Commun	12 new susceptibility loci for prostate cancer identified by genome-wide association study in Japanese population.	Prostate cancer	5,088 Japanese ancestry cases, 10,682 Japanese ancestry controls	4,818 Japanese ancestry cases, 73,261 Japanese ancestry controls	8q24.21	intergenic	rs6983267-G	0.334	1E-8		1.1560693	NR	Illumina [7742602] (imputed)	N
1564	chr8	128413304	128413305	rs6983267	31089142	Law PJ	2019-05-14	Nat Commun	Association analyses identify 31 new risk loci for colorectal cancer susceptibility.	Colorectal cancer	31,197 European ancestry cases, 61,770 European ancestry controls	NA	8q24.21	NR	rs6983267-G	NR	2E-57		1.19	[1.16-1.21]	Affymetrix, Illumina [> 10000000] (imputed)	N
1564	chr8	128413304	128413305	rs6983267	30529582	Lu Y	2018-12-06	Gastroenterology	Large-scale Genome-wide Association Study of East Asians Identifies Loci Associated With Risk for Colorectal Cancer.	Colorectal cancer	22,775 East Asian ancestry cases, 47,731 East Asian ancestry controls	NA	8q24.21	POU5F1B	rs6983267-G	0.39	1E-31		1.17	[1.14-1.20]	Affymetrix, Illumina [up to 10700000] (imputed)	N
1564	chr8	128413304	128413305	rs6983267	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	8q24.21	MYC	rs6983267-G	0.5228	3E-64		1.16	[1.14-1.18]	Affymetrix, Illumina [16900397] (imputed)	N
1564	chr8	128413304	128413305	rs6983267	30104761	Zhou W	2018-08-13	Nat Genet	Efficiently controlling for case-control imbalance and sample relatedness in large-scale genetic association studies.	Colorectal cancer	4,562 European ancestry cases, 382,756 European ancestry controls	NA	8q24.21	CCAT2	rs6983267-T	0.481	7E-12				Affymetrix [28000000] (imputed)	N
1564	chr8	128413304	128413305	rs6983267	29917119	Schmit SL	2018-06-16	J Natl Cancer Inst	Novel Common Genetic Susceptibility Loci for Colorectal Cancer.	Colorectal cancer	36,948 European ancestry cases, 30,864 European ancestry controls	12,952 European ancestry cases, 48,383 European ancestry controls, 8,580 East Asian ancestry cases, 13,050 East Asian ancestry controls, 1,611 Hispanic cases, 4,330 Hispanic controls, 1,894 African American cases, 4,703 African American controls	8q24.21	NR	rs6983267-G	0.499	8E-27	(EA)	1.1363636	[1.11-1.16]	Affymetrix, Illumina [12931465] (imputed)	N
1564	chr8	128413304	128413305	rs6983267	29471430	Tanikawa C	2018-02-17	Carcinogenesis	GWAS Identifies Two Novel Colorectal Cancer Loci at 16q24.1 and 20q13.12.	Colorectal cancer	6,692 Japanese ancestry cases, 27,178 Japanese ancestry controls	3,713 Japanese ancestry cases, 7,333 Japanese ancestry controls	8q24.21	POU5F1B	rs6983267-?	0.332	1E-19		1.2033695	[1.16-1.25]	Illumina [6774630] (imputed)	N
1564	chr8	128413304	128413305	rs6983267	28960316	Tanskanen T	2017-09-28	Int J Cancer	Genome-wide association study and meta-analysis in Northern European populations replicate multiple colorectal cancer risk loci.	Colorectal cancer	1,701 Finnish ancestry cases, 14,082 Finnish ancestry controls	11,647 European ancestry cases, 12,356 European ancestry controls	8q24.21	CCAT2, LOC101930033	rs6983267-G	NR	2E-21		1.18	[1.18-1.18]	Illumina [9068015] (imputed)	N
1564	chr8	128413304	128413305	rs6983267	26965516	Zeng C	2016-03-08	Gastroenterology	Identification of Susceptibility Loci and Genes for Colorectal Cancer Risk.	Colorectal cancer	4,508 East Asian ancestry cases, 16,588 East Asian ancestry controls	11,044 East Asian ancestry cases, 18,036 East Asian ancestry controls	8q24.21	NR	rs6983267-G	0.38	5E-14		1.14	[1.10-1.18]	Affymetrix, Illumina [~ 4000000] (imputed)	N
1564	chr8	128413304	128413305	rs6983267	26151821	Schumacher FR	2015-07-07	Nat Commun	Genome-wide association study of colorectal cancer identifies six new susceptibility loci.	Colorectal cancer	18,299 European ancestry cases, 19,656 European ancestry controls	4,725 East Asian ancestry cases, 9,969 East Asian ancestry controls	8q24.21	MYC	rs6983267-G	0.5	4E-14		1.1235955	[1.09-1.15]	Affymetrix, Illumina [~ 2500000] (imputed)	N
1564	chr8	128413304	128413305	rs6983267	26034056	Hoffmann TJ	2015-06-01	Cancer Discov	A large multiethnic genome-wide association study of prostate cancer identifies novel risk variants and substantial ethnic differences.	Prostate cancer	6,406 European ancestry cases, 601 African American cases, 288 East Asian ancestry cases, 488 Latino cases30,866 European ancestry controls, 1,650 African American controls, 2,938 East Asian ancestry controls, 3,141 Latino controls	4,599 European ancestry cases, 2,265 African American cases, 2,940 European ancestry controls, 2,414 African American controls	8q24.21	NR	rs6983267-G	0.51	3E-27		1.25	[1.20-1.30]	Affymetrix [up to 19977088] (imputed)	N
1564	chr8	128413304	128413305	rs6983267	26034056	Hoffmann TJ	2015-06-01	Cancer Discov	A large multiethnic genome-wide association study of prostate cancer identifies novel risk variants and substantial ethnic differences.	Prostate cancer	6,406 European ancestry cases, 601 African American cases, 288 East Asian ancestry cases, 488 Latino cases30,866 European ancestry controls, 1,650 African American controls, 2,938 East Asian ancestry controls, 3,141 Latino controls	4,599 European ancestry cases, 2,265 African American cases, 2,940 European ancestry controls, 2,414 African American controls	8q24.21	NR	rs6983267-G	0.51	3E-24	(European)	1.25	[1.20-1.31]	Affymetrix [up to 19977088] (imputed)	N
1564	chr8	128413304	128413305	rs6983267	25939597	Berndt SI	2015-05-05	Nat Commun	Two susceptibility loci identified for prostate cancer aggressiveness.	Prostate cancer	4,600 European ancestry cases, 2,941 European ancestry controls	7,779 European ancestry cases, 7,623 European ancestry controls	8q24.21	NR	rs6983267-G	0.499	4E-10		1.23	[1.15-1.32]	Illumina [1531807] (imputed)	N
1564	chr8	128413304	128413305	rs6983267	24836286	Zhang B	2014-05-18	Nat Genet	Large-scale genetic study in East Asians identifies six new loci associated with colorectal cancer risk.	Colorectal cancer	2,098 East Asian ancestry cases, 6,172 East Asian ancestry controls	12,865 East Asian ancestry cases, 25,773 East Asian ancestry controls, up to 16,984 European ancestry cases, up to 18,262 European ancestry controls	8q24.21	intergenic	rs6983267-G	0.38	5E-14	(East Asian)	1.14	[1.10-1.18]	Affymetrix, Illumina [2400000] (imputed)	N
1564	chr8	128413304	128413305	rs6983267	24753544	Knipe DW	2014-04-21	Cancer Epidemiol Biomarkers Prev	Genetic variation in prostate-specific antigen-detected prostate cancer and the effect of control selection on genetic association studies.	Prostate cancer	1,146 European ancestry cases, 1,804 European ancestry controls	1,854 European ancestry cases, 1,437 European ancestry controls	8q24.21	SRRM1P1, POU5F1B	rs6983267-G		4E-15		0.29	[0.22-0.36] unit increase	Illumina [514432] (imputed)	N
1564	chr8	128413304	128413305	rs6983267	24740154	Lange EM	2014-04-16	PLoS One	Genome-wide association scan for variants associated with early-onset prostate cancer.	Prostate cancer (early onset)	931 European ancestry cases, 4,120 European ancestry controls	2,571 European ancestry cases, 921 European ancestry controls	8q24.21	NR	rs6983267-G	NR	1E-8		1.36	[NR]	Illumina [2639562] (imputed)	N
1564	chr8	128413304	128413305	rs6983267	23266556	Peters U	2012-12-21	Gastroenterology	Identification of Genetic Susceptibility Loci for Colorectal Tumors in a Genome-Wide Meta-analysis.	Colorectal cancer	12,696 European ancestry colorectal tumor cases, 15,113 European ancestry controls	958 European ancestry colorectal tumor cases, 909 European ancestry controls, up to 2,098 East Asian ancestry colorectal tumor cases, up to 5,749 East Asian ancestry controls	8q24.21	MYC	rs6983267-G	0.5	1E-11		1.13	[1.09-1.18]	Affymetrix, Illumina [2708280] (imputed)	N
1564	chr8	128413304	128413305	rs6983267	21743057	Schumacher FR	2011-07-08	Hum Mol Genet	Genome-wide association study identifies new prostate cancer susceptibility loci.	Prostate cancer	2,782 European ancestry cases, 4,458 European ancestry controls	7,358 European ancestry cases, 6,732 European ancestry controls	8q24.21	intergenic	rs6983267-G	NR	9E-6		1.2	[1.11-1.32]	Illumina [571243]	N
1564	chr8	128413304	128413305	rs6983267	21242260	Cui R	2011-01-17	Gut	Common variant in 6q26-q27 is associated with distal colon cancer in an Asian population.	Colorectal cancer	1,583 Japanese ancestry cases, 1,898 Japanese ancestry controls	4,584 Japanese ancestry cases, 225 Korean ancestry distal cases, 2,973 East Asian ancestry controls	8q24.21	intergenic	rs6983267-G	0.34	2E-8	(colorectal cancer)	1.18	[1.11-1.25]	Illumina [391749]	N
1564	chr8	128413304	128413305	rs6983267	18372905	Tomlinson IP	2008-03-30	Nat Genet	A genome-wide association study identifies colorectal cancer susceptibility loci on chromosomes 10p14 and 8q23.3.	Colorectal cancer	922 European ancestry cases, 927 European ancestry controls	17,089 European ancestry cases, 16,862 European ancestry controls, 783 cases, 664 controls	8q24.21	intergenic	rs6983267-?	0.48	7E-11		1.24	[1.17-1.33]	Illumina [547647]	N
1564	chr8	128413304	128413305	rs6983267	18264097	Eeles RA	2008-02-10	Nat Genet	Multiple newly identified loci associated with prostate cancer susceptibility.	Prostate cancer	1,854 European ancestry cases, 1,894 European ancestry controls	3,268 European ancestry cases, 3,366 European ancestry controls	8q24.21	intergenic	rs6983267-G	0.49	9E-13		1.42	[NR]	Illumina [541129]	N
1564	chr8	128413304	128413305	rs6983267	18264096	Thomas G	2008-02-10	Nat Genet	Multiple loci identified in a genome-wide association study of prostate cancer.	Prostate cancer	1,172 European ancestry cases, 1,157 European ancestry controls	3,941 European ancestry cases, 3,964 European ancestry controls	8q24.21	intergenic	rs6983267-G	0.53	7E-12		1.28	[1.15-1.45]	Illumina [527869]	N
1564	chr8	128413304	128413305	rs6983267	17618284	Tomlinson I	2007-07-08	Nat Genet	A genome-wide association scan of tag SNPs identifies a susceptibility variant for colorectal cancer at 8q24.21.	Colorectal cancer	930 European ancestry cases, 960 European ancestry controls	7,334 European ancestry cases, 5,246 European ancestry controls	8q24.21	intergenic	rs6983267-G	0.49	1E-14		1.27	[1.16-1.39]	Illumina [547647]	N
1564	chr8	128413304	128413305	rs6983267	17401363	Yeager M	2007-04-01	Nat Genet	Genome-wide association study of prostate cancer identifies a second risk locus at 8q24.	Prostate cancer	1,172 European ancestry cases, 1,157 European ancestry controls	3,124 European ancestry cases, 3,142 European ancestry controls	8q24.21	intergenic	rs6983267-G	0.50	9E-13		1.26	[1.13-1.41]	Illumina [538548]	N
1564	chr8	128413782	128413783	rs79101886	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	8q24.21		rs79101886-T	NR	2E-8		1.1376565	[1.09-1.19]	Affymetrix [7846216] (imputed)	N
1564	chr8	128414891	128414892	rs7013278	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	8q24.21	MYC	rs7013278-T	0.3761	2E-56		1.15	[1.13-1.17]	Affymetrix, Illumina [16900397] (imputed)	N
1564	chr8	128421784	128421785	rs4871788	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Colorectal cancer	8,305 East Asian ancestry cases, 159,386 East Asian ancestry controls	NA	8q24.21		rs4871788-A	0.682296647	1E-19		0.16026191	[0.13-0.19] unit decrease	Illumina [13428297] (imputed)	N
1564	chr8	128424791	128424792	rs7014346	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Colon cancer	3,793 European ancestry cases, 410,350 European ancestry controls	NA	8q24.21		rs7014346-A	NR	4E-17		1.2191	NR	Affymetrix [7846216] (imputed)	N
1564	chr8	128424791	128424792	rs7014346	26965516	Zeng C	2016-03-08	Gastroenterology	Identification of Susceptibility Loci and Genes for Colorectal Cancer Risk.	Colorectal cancer	4,508 East Asian ancestry cases, 16,588 East Asian ancestry controls	11,044 East Asian ancestry cases, 18,036 East Asian ancestry controls	8q24.21	NR	rs7014346-A	0.27	2E-8		1.13	[1.08-1.17]	Affymetrix, Illumina [~ 4000000] (imputed)	N
1564	chr8	128424791	128424792	rs7014346	25990418	Al-Tassan NA	2015-05-20	Sci Rep	A new GWAS and meta-analysis with 1000Genomes imputation identifies novel risk variants for colorectal cancer.	Colorectal cancer	7,577 European ancestry cases, 9,979 European ancestry controls	NA	8q24.21	MYC	rs7014346-A	0.34	6E-15		1.19	[NR]	Affymetrix, Illumina [~ 10000000] (imputed)	N
1564	chr8	128424791	128424792	rs7014346	18372901	Tenesa A	2008-03-30	Nat Genet	Genome-wide association scan identifies a colorectal cancer susceptibility locus on 11q23 and replicates risk loci at 8q24 and 18q21.	Colorectal cancer	981 European ancestry cases, 1,002 European ancestry controls	10,287 European ancestry cases, 10,401 European ancestry controls, 4,400 Japanese ancestry cases, 3,179 Japanese ancestry controls, 1,789 cases, 1,771 controls	8q24.21	POU5FIP1, HsG57825, DQ515897	rs7014346-A	0.18	9E-26		1.19	[1.15-1.23]	Illumina [541628]	N
1564	chr8	128427719	128427720	rs4871022	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Colorectal cancer	7,062 Japanese ancestry cases, 195,745 Japanese ancestry controls	NA	8q24.21		rs4871022-T	0.681929434	1E-24		0.8269473	[0.797418023-0.857570068]	Illumina [8919992] (imputed)	N
1564	chr8	128428794	128428795	rs6998254	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Prostate cancer	5,408 Japanese ancestry cases, 103,939 Japanese ancestry controls	NA	8q24.21		rs6998254-A	NR	6E-14		0.8507393	[0.815561086356734-0.887434902845924]	Illumina [8919992] (imputed)	N
1564	chr8	128440650	128440651	rs6995633	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	8q24.21		rs6995633-A	NR	1E-7		1.136	[1.083-1.191]	Affymetrix [7846216] (imputed)	N
1564	chr8	128440823	128440824	rs72712398	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	8q24.21	POU5F1B	rs72712398-C	0.0167791160272136	9E-6	(G_Barnesiella_HB)	0.97724	[0.55-1.41] unit decrease	Illumina [7711310] (imputed)	N
1564	chr8	128441534	128441535	rs4871790	34012061	Sipeky C	2021-05-19	Prostate Cancer Prostatic Dis	Novel prostate cancer susceptibility gene SP6 predisposes patients to aggressive disease.	Prostate cancer	2,738 Finnish ancestry cases, 2,400 Finnish ancestry controls	NA	8q24.21	CASC8	rs4871790-C	0.5	2E-8		0.8	[0.74-0.87] unit decrease	Illumina [185478]	N
1564	chr8	128444785	128444786	rs56868629	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	8q24.21		rs56868629-A	NR	1E-12		1.1947432	[1.14-1.26]	Affymetrix [7846216] (imputed)	N
1564	chr8	128445010	128445011	rs78449170	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	8q24.21		rs78449170-T	NR	3E-8		1.178	[1.112-1.249]	Affymetrix [7846216] (imputed)	N
1565	chr8	128464948	128464949	rs58376190	28115739	Smith AH	2017-01-24	Mol Psychiatry	Genome-wide association study of therapeutic opioid dosing identifies a novel locus upstream of OPRM1.	Methadone dose in opioid dependence	1,027 European American cases, 383 African American cases	NA	8q24.21	POU5F1B	rs58376190-A	0.20911460564751705	3E-6	(EA)	0.2639	[0.15-0.37] unit increase	Illumina [at least 988306] (imputed)	N
1565	chr8	128465186	128465187	rs28451337	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	8q24.21		rs28451337-T	NR	2E-9		1.1061947	[1.07-1.14]	Affymetrix [7846216] (imputed)	N
1565	chr8	128472319	128472320	rs1447293	34012061	Sipeky C	2021-05-19	Prostate Cancer Prostatic Dis	Novel prostate cancer susceptibility gene SP6 predisposes patients to aggressive disease.	Prostate cancer	2,738 Finnish ancestry cases, 2,400 Finnish ancestry controls	NA	8q24.21	CASC8	rs1447293-G	0.44	6E-9		1.26	[1.16-1.36] unit increase	Illumina [185478]	N
1565	chr8	128473524	128473525	rs4871796	28139693	Hoffmann TJ	2017-01-31	Nat Commun	Genome-wide association study of prostate-specific antigen levels identifies novel loci independent of prostate cancer.	Prostate-specific antigen levels (conditioned on lead SNPs)	28,503 European ancestry individuals	2,716 Latino individuals, 2,518 East Asian ancestry individuals, 1,585 African American individuals, 6,193 European ancestry individuals (later diagnosed with prostate cancer)	8q24.21	intergenic	rs4871796-?	0.073	4E-6	(conditional on Round 2 SNPs)	0.048	unit increase	Affymetrix [10109774] (imputed)	N
1565	chr8	128479962	128479963	rs4871798	34012061	Sipeky C	2021-05-19	Prostate Cancer Prostatic Dis	Novel prostate cancer susceptibility gene SP6 predisposes patients to aggressive disease.	Prostate cancer	2,738 Finnish ancestry cases, 2,400 Finnish ancestry controls	NA	8q24.21	CASC8	rs4871798-A	0.23	3E-10		1.33	[1.22-1.46] unit increase	Illumina [185478]	N
1565	chr8	128485037	128485038	rs1447295	31562322	Takata R	2019-09-27	Nat Commun	12 new susceptibility loci for prostate cancer identified by genome-wide association study in Japanese population.	Prostate cancer	5,088 Japanese ancestry cases, 10,682 Japanese ancestry controls	4,818 Japanese ancestry cases, 73,261 Japanese ancestry controls	8q24.21	CASC6	rs1447295-A	0.179	4E-42		1.5060241	NR	Illumina [7742602] (imputed)	N
1565	chr8	128485037	128485038	rs1447295	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	8q24.21	NR	rs1447295-A	0.11	1E-179		1.41	[1.38-1.45]	Illumina [20370935] (imputed)	N
1565	chr8	128485037	128485038	rs1447295	26443449	Wang M	2015-10-07	Nat Commun	Large-scale association analysis in Asians identifies new susceptibility loci for prostate cancer.	Prostate cancer	3,000 East Asian ancestry cases, 4,394 East Asian ancestry controls	3,605 East Asian ancestry cases, 3,919 East Asian ancestry controls	8q24.21	LOC727677, POU5F1B	rs1447295-A	NR	4E-23		1.5384616	[NR]	Illumina [4550396] (imputed)	N
1565	chr8	128485037	128485038	rs1447295	24753544	Knipe DW	2014-04-21	Cancer Epidemiol Biomarkers Prev	Genetic variation in prostate-specific antigen-detected prostate cancer and the effect of control selection on genetic association studies.	Prostate cancer	1,146 European ancestry cases, 1,804 European ancestry controls	1,854 European ancestry cases, 1,437 European ancestry controls	8q24.21	MYC	rs1447295-A		6E-18		0.51	[0.40-0.63] unit increase	Illumina [514432] (imputed)	N
1565	chr8	128485037	128485038	rs1447295	19767754	Gudmundsson J	2009-09-20	Nat Genet	Genome-wide association and replication studies identify four variants associated with prostate cancer susceptibility.	Prostate cancer	Up to 1,968 European ancestry cases, 35,382 European ancestry controls	Up to 11,806 European ancestry cases, 12,387 European ancestry controls	8q24.21	intergenic	rs1447295-A	0.11	2E-19		1.58	[1.43-1.74]	Illumina [310520]	N
1565	chr8	128485037	128485038	rs1447295	17401366	Gudmundsson J	2007-04-01	Nat Genet	Genome-wide association study identifies a second prostate cancer susceptibility variant at 8q24.	Prostate cancer	1,453 European ancestry cases, 3,064 European ancestry controls	1,210 European ancestry cases, 2,445 European ancestry controls, 373 African American cases, 372 African American controls	8q24.21	intergenic	rs1447295-A	0.09	6E-18		1.6	[1.43-1.77]	Illumina [316515]	N
1565	chr8	128485037	128485038	rs1447295	17401363	Yeager M	2007-04-01	Nat Genet	Genome-wide association study of prostate cancer identifies a second risk locus at 8q24.	Prostate cancer	1,172 European ancestry cases, 1,157 European ancestry controls	3,124 European ancestry cases, 3,142 European ancestry controls	8q24.21	intergenic	rs1447295-A	0.11	2E-14		1.43	[1.29-1.59]	Illumina [538548]	N
1565	chr8	128496775	128496776	rs6985504	34012061	Sipeky C	2021-05-19	Prostate Cancer Prostatic Dis	Novel prostate cancer susceptibility gene SP6 predisposes patients to aggressive disease.	Prostate cancer	2,738 Finnish ancestry cases, 2,400 Finnish ancestry controls	NA	8q24.21	CASC8	rs6985504-A	0.3	1E-8		1.27	[1.17-1.38] unit increase	Illumina [185478]	N
1565	chr8	128504496	128504497	rs17766217	22041458	Clark SL	2011-11-01	Psychol Med	Pharmacogenomic study of side-effects for antidepressant treatment options in STAR*D.	Response to anti-depressant treatment in major depressive disorder	1,151 European ancestry cases, 288 African American cases	NA	8q24.21	POU5F1B	rs17766217-A	0.01	3E-7	(Citalopram+Buspirone, General side effects)			Affymetrix [421789]	N
1565	chr8	128517572	128517573	rs4242382	25939597	Berndt SI	2015-05-05	Nat Commun	Two susceptibility loci identified for prostate cancer aggressiveness.	Prostate cancer	4,600 European ancestry cases, 2,941 European ancestry controls	7,779 European ancestry cases, 7,623 European ancestry controls	8q24.21	LOC727677, CASC8	rs4242382-A	0.1	1E-34		1.45	[1.35-1.54]	Illumina [1531807] (imputed)	N
1565	chr8	128517572	128517573	rs4242382	18264096	Thomas G	2008-02-10	Nat Genet	Multiple loci identified in a genome-wide association study of prostate cancer.	Prostate cancer	1,172 European ancestry cases, 1,157 European ancestry controls	3,941 European ancestry cases, 3,964 European ancestry controls	8q24.21	intergenic	rs4242382-A	0.12	3E-19		1.66	[1.47-1.87]	Illumina [527869]	N
1565	chr8	128518553	128518554	rs4242384	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Prostate cancer	7,438 White British ancestry cases, 118,206 White British ancestry controls	NA	8q24.21		rs4242384-?	NR	1E-34		1.37334	[1.32-1.42]	NR [680312]	N
1565	chr8	128518553	128518554	rs4242384	21743057	Schumacher FR	2011-07-08	Hum Mol Genet	Genome-wide association study identifies new prostate cancer susceptibility loci.	Prostate cancer	2,782 European ancestry cases, 4,458 European ancestry controls	7,358 European ancestry cases, 6,732 European ancestry controls	8q24.21	intergenic	rs4242384-C	NR	3E-16		1.56	[1.40-1.73]	Illumina [571243]	N
1565	chr8	128518553	128518554	rs4242384	19767753	Eeles RA	2009-09-20	Nat Genet	Identification of seven new prostate cancer susceptibility loci through a genome-wide association study.	Prostate cancer	1,854 European ancestry cases, 1,894 European ancestry controls	19,879 cases and 18,761 controls of European, East Asian, African American, Latino, and Hawaiian ancestry	8q24.21	NR	rs4242384-?	NR	2E-24				Illumina [541129]	N
1565	chr8	128518553	128518554	rs4242384	18264097	Eeles RA	2008-02-10	Nat Genet	Multiple newly identified loci associated with prostate cancer susceptibility.	Prostate cancer	1,854 European ancestry cases, 1,894 European ancestry controls	3,268 European ancestry cases, 3,366 European ancestry controls	8q24.21	intergenic	rs4242384-C	0.09	3E-16		1.88	[NR]	Illumina [541129]	N
1565	chr8	128528434	128528435	rs4582524	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Prostate cancer	10,792 European ancestry cases, 410,350 European ancestry controls	NA	8q24.21		rs4582524-G	NR	4E-60		1.4279	NR	Affymetrix [7846216] (imputed)	N
1565	chr8	128530615	128530616	rs13255059	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Prostate cancer	5,408 Japanese ancestry cases, 103,939 Japanese ancestry controls	NA	8q24.21		rs13255059-G	NR	3E-86		0.5574063	[0.525898333919347-0.590802019525736]	Illumina [8919992] (imputed)	N
1565	chr8	128531688	128531689	rs11986220	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Prostate cancer	11,599 European ancestry cases, 199,628 European ancestry controls, 5,672 East Asian ancestry cases, 84,660 East Asian ancestry controls	NA	8q24.21		rs11986220-T	NR	6E-141		0.4569	[0.42-0.49] unit decrease	Affymetrix, Illumina [25775424] (imputed)	N
1565	chr8	128531688	128531689	rs11986220	26034056	Hoffmann TJ	2015-06-01	Cancer Discov	A large multiethnic genome-wide association study of prostate cancer identifies novel risk variants and substantial ethnic differences.	Prostate cancer	6,406 European ancestry cases, 601 African American cases, 288 East Asian ancestry cases, 488 Latino cases30,866 European ancestry controls, 1,650 African American controls, 2,938 East Asian ancestry controls, 3,141 Latino controls	4,599 European ancestry cases, 2,265 African American cases, 2,940 European ancestry controls, 2,414 African American controls	8q24.21	NR	rs11986220-A	0.14	9E-7	(East Asian)	1.83	[1.44-2.33]	Affymetrix [up to 19977088] (imputed)	N
1565	chr8	128531688	128531689	rs11986220	26034056	Hoffmann TJ	2015-06-01	Cancer Discov	A large multiethnic genome-wide association study of prostate cancer identifies novel risk variants and substantial ethnic differences.	Prostate cancer	6,406 European ancestry cases, 601 African American cases, 288 East Asian ancestry cases, 488 Latino cases30,866 European ancestry controls, 1,650 African American controls, 2,938 East Asian ancestry controls, 3,141 Latino controls	4,599 European ancestry cases, 2,265 African American cases, 2,940 European ancestry controls, 2,414 African American controls	8q24.21	NR	rs11986220-A	0.099	4E-45		1.54	[1.45-1.63]	Affymetrix [up to 19977088] (imputed)	N
1565	chr8	128531688	128531689	rs11986220	26034056	Hoffmann TJ	2015-06-01	Cancer Discov	A large multiethnic genome-wide association study of prostate cancer identifies novel risk variants and substantial ethnic differences.	Prostate cancer	6,406 European ancestry cases, 601 African American cases, 288 East Asian ancestry cases, 488 Latino cases30,866 European ancestry controls, 1,650 African American controls, 2,938 East Asian ancestry controls, 3,141 Latino controls	4,599 European ancestry cases, 2,265 African American cases, 2,940 European ancestry controls, 2,414 African American controls	8q24.21	NR	rs11986220-A	0.099	2E-40	(European)	1.56	[1.46-1.67]	Affymetrix [up to 19977088] (imputed)	N
1565	chr8	128532136	128532137	rs10090154	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 91,972 European ancestry controls	6,852 European ancestry cases, 193,117 European ancestry controls	8q24.21	NR	rs10090154-T	0.09964465	5E-23		1.2957077	[1.23-1.36]	Affymetrix, Illumina [20400945] (imputed)	N
1565	chr8	128532136	128532137	rs10090154	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	8q24.21	NR	rs10090154-T	NR	3E-15		1.347	[1.25-1.45]	Affymetrix, Illumina [29235255] (imputed)	N
1565	chr8	128532136	128532137	rs10090154	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	8,611 East Asian ancestry cases, 18,809 East Asian ancestry controls	NA	8q24.21	NR	rs10090154-T	0.154	4E-6		1.612	[1.32-1.97]	Affymetrix, Illumina [10186136] (imputed)	N
1565	chr8	128532136	128532137	rs10090154	22923026	Cheng I	2012-08-24	Cancer Epidemiol Biomarkers Prev	Evaluating genetic risk for prostate cancer among Japanese and Latinos.	Prostate cancer	1,033 Japanese ancestry cases, 1,042 Japanese ancestry controls, 1,043 Latino cases, 1,057 Latino controls	1,583 Japanese ancestry cases, 3,386 Japanese ancestry  controls, 1,854 European ancestry cases, 3,748 European ancestry controls	8q24.21	NR	rs10090154-T	0.08	3E-6	(Latin American)	1.68	[1.35-2.09]	Illumina [528023]	N
1565	chr8	128533472	128533473	rs7843031	31226226	Du Z	2019-06-21	Int J Cancer	A Genome-wide Association Study of Prostate Cancer in Latinos.	Prostate cancer	2,714 Hispanic or Latin American cases, 5,239 Hispanic or Latin American controls	NA	8q24.21	NR	rs7843031-T	0.09	5E-10		1.53	[1.34-1.74]	Affymetrix, Illumina [10330976] (imputed)	N
1565	chr8	128534653	128534654	rs9656816	34012061	Sipeky C	2021-05-19	Prostate Cancer Prostatic Dis	Novel prostate cancer susceptibility gene SP6 predisposes patients to aggressive disease.	Prostate cancer	2,738 Finnish ancestry cases, 2,400 Finnish ancestry controls	NA	8q24.21	CASC8, CASC11	rs9656816-G	0.12	2E-10		1.43	[1.28-1.60] unit increase	Illumina [185478]	N
1565	chr8	128535542	128535543	rs34265760	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	8q24.21	NR	rs34265760-T	NR	3E-10		1.117	[1.08-1.16]	Affymetrix, Illumina [29235255] (imputed)	N
1565	chr8	128535542	128535543	rs34265760	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	8,611 East Asian ancestry cases, 18,809 East Asian ancestry controls	NA	8q24.21	NR	rs34265760-T	0.906	8E-9		1.215	[1.14-1.30]	Affymetrix, Illumina [10186136] (imputed)	N
1565	chr8	128539359	128539360	rs7837688	32986714	Fiorica PN	2020-09-28	PLoS One	Multi-ethnic transcriptome-wide association study of prostate cancer.	Prostate cancer	1,106 Japanese American cases, 1,093 Japanese American controls	NA	8q24.21	NR	rs7837688-?		3E-9		0.48	unit increase	Illumina [4623264] (imputed)	N
1565	chr8	128539359	128539360	rs7837688	31562322	Takata R	2019-09-27	Nat Commun	12 new susceptibility loci for prostate cancer identified by genome-wide association study in Japanese population.	Prostate cancer	5,088 Japanese ancestry cases, 10,682 Japanese ancestry controls	4,818 Japanese ancestry cases, 73,261 Japanese ancestry controls	8q24.21	intergenic	rs7837688-T	0.158	2E-58		1.7271158	NR	Illumina [7742602] (imputed)	N
1565	chr8	128539359	128539360	rs7837688	20676098	Takata R	2010-08-01	Nat Genet	Genome-wide association study identifies five new susceptibility loci for prostate cancer in the Japanese population.	Prostate cancer	1,583 Japanese ancestry cases, 3,386 Japanese ancestry controls	3,001 Japanese ancestry cases, 5,415 Japanese ancestry controls	8q24.21	intergenic	rs7837688-?	NR	1E-25				Illumina [510687]	N
1565	chr8	128540775	128540776	rs12549761	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 91,972 European ancestry controls	6,852 European ancestry cases, 193,117 European ancestry controls	8q24.21	NR	rs12549761-C	0.878451631	2E-8		1.1715244	[1.11-1.24]	Affymetrix, Illumina [20400945] (imputed)	N
1565	chr8	128540775	128540776	rs12549761	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	8q24.21	NR	rs12549761-C	NR	2E-49		1.176	[1.15-1.20]	Affymetrix, Illumina [29235255] (imputed)	N
1565	chr8	128540775	128540776	rs12549761	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	8q24.21		rs12549761-C	NR	3E-14		1.22	[1.159-1.284]	Affymetrix [7846216] (imputed)	N
1565	chr8	128542443	128542444	rs28489376	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Prostate cancer	5,408 Japanese ancestry cases, 103,939 Japanese ancestry controls	NA	8q24.21		rs28489376-T	NR	7E-11	(conditional)	1.1941068	[1.13214150898292-1.25946353702893]	Illumina [8919992] (imputed)	N
1565	chr8	128571854	128571855	rs4313119	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota (alpha diversity)	858 Metropolitan French ancestry individuals	NA	8q24.21	NR	rs4313119-?	NR	2E-6	(Simpson's diversity index)	356360.0	[210254.16-502465.84] unit decrease	Illumina [5293637] (imputed)	N
1565	chr8	128571854	128571855	rs4313119	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	8q24.21	MYC	rs4313119-G	0.7486	1E-9		1.06	[1.04-1.08]	Affymetrix, Illumina [16900397] (imputed)	N
1566	chr8	128599671	128599672	rs4551307	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	8q24.21		rs4551307-?	NR	4E-15				NR [~ 8900000] (imputed)	N
1566	chr8	128611495	128611496	rs75607298	29422769	Shah RL	2018-02-05	Mol Vis	A genome-wide association study of corneal astigmatism: The CREAM Consortium.	Corneal astigmatism	9,293 European ancestry cases, 12,957 European ancestry controls, 4,349 Asian ancestry cases, 4,771 Asian ancestry controls	NA	8q24.21	CASC11	rs75607298-A	0.72	2E-6		1.14	[1.08-1.21]	NR [~ 55000000] (imputed)	N
1566	chr8	128631669	128631670	rs12546957	30898391	Lawrenson K	2019-03-19	Gynecol Oncol	Genome-wide association studies identify susceptibility loci for epithelial ovarian cancer in east Asian women.	Epithelial ovarian cancer	3,238 East Asian ancestry cases, 4,083 East Asian ancestry controls	NA	8q24.21		rs12546957-?	NR	3E-6	(serous_hg)	1.24		Illumina [11595112] (imputed)	N
1566	chr8	128644954	128644955	rs4130120	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Skin reflectance (Melanin index)	720 South Asian ancestry individuals		8q24.21	NR	rs4130120-C	NR	2E-6		0.48551	[0.29-0.68] unit decrease	Affymetrix, Illumina [at least 398118] (imputed)	N
1566	chr8	128648725	128648726	rs72716801	30940813	Kranzler HR	2019-04-02	Nat Commun	Genome-wide association study of alcohol consumption and use disorder in 274,424 individuals from multiple populations.	Alcohol use disorder	34,658 European American cases, 167,346 European American controls, 17,267 African American cases, 39,381 African American controls, 3,449 Latino American cases, 10,726 Latino American controls, 164 East Asian American cases, 1,210 East Asian American controls, 46 South Asian American cases, 144 South Asian American controls	NA	8q24.21	MYC	rs72716801-G	0.968	5E-8	(AA, women)	1.886	[1.66-2.11]	Affymetrix [up to 12500000] (imputed)	N
1566	chr8	128669297	128669298	rs55738171	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8q24.21	NR	rs55738171-C	0.02439	2E-8	(SULT1A1)	1.628	NR unit increase	Illumina [1671387] (imputed)	N
1566	chr8	128689324	128689325	rs7833090	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	8q24.21	NR	rs7833090-C	0.2535	2E-6	(EA)	0.0339	[0.02-0.048] unit decrease	Illumina [~ 11800000] (imputed)	N
1566	chr8	128711741	128711742	rs17772814	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	8q24.21	NR	rs17772814-G	0.9154	3E-9		0.0752	[0.05-0.1] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1566	chr8	128711741	128711742	rs17772814	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	8q24.21	NR	rs17772814-G	0.917	3E-8		0.0685	[0.044-0.093] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1566	chr8	128711741	128711742	rs17772814	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	8q24.21	CASC11	rs17772814-G	0.9151	5E-10		1.08	[1.05-1.11]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1567	chr8	128713872	128713873	rs16902328	24529757	Xie T	2014-01-17	Neurobiol Aging	Genome-wide association study combining pathway analysis for typical sporadic amyotrophic lateral sclerosis in Chinese Han populations.	Amyotrophic lateral sclerosis (sporadic)	250 Han Chinese ancestry cases, 250 Han Chinese ancestry controls	NA	8q24.21	LOC727677	rs16902328-?		3E-6				Illumina [859311]	N
1567	chr8	128718067	128718068	rs9642880	24163127	Figueroa JD	2013-10-24	Hum Mol Genet	Genome-wide association study identifies multiple loci associated with bladder cancer risk.	Bladder cancer	up to 2,305 European ancestry cases, up to 3,901 European ancestry controls	up to 13,298 cases, up to 54,535 controls	8q24.21	intergenic	rs9642880-T	0.45	4E-38		1.24	[1.20-1.28]	Illumina [462190]	N
1567	chr8	128718067	128718068	rs9642880	20972438	Rothman N	2010-10-24	Nat Genet	A multi-stage genome-wide association study of bladder cancer identifies multiple susceptibility loci.	Bladder cancer	3,532 European ancestry cases, 5,120 European ancestry controls	8,381 cases, 48,275 controls	8q24.21	MYC	rs9642880-T	0.45	2E-18		1.21	[1.16-1.27]	Illumina [589299]	N
1567	chr8	128718067	128718068	rs9642880	20348956	Kiemeney LA	2010-03-28	Nat Genet	A sequence variant at 4p16.3 confers susceptibility to urinary bladder cancer.	Urinary bladder cancer	1,889 European ancestry cases, 39,310 European ancestry controls	2,850 European ancestry cases, 6,239 European ancestry controls	8q24.21	MYC	rs9642880-T	0.44	7E-12		1.21	[1.15-1.28]	Illumina [304703]	N
1567	chr8	128718067	128718068	rs9642880	18794855	Kiemeney LA	2008-09-14	Nat Genet	Sequence variant on 8q24 confers susceptibility to urinary bladder cancer.	Urinary bladder cancer	1,803 European ancestry cases, 34,336 European ancestry controls	2,165 European ancestry cases, 3,800 European ancestry controls	8q24.21	MYC, BC042052	rs9642880-T	0.45	9E-12		1.22	[1.15-1.29]	Illumina [302140]	N
1567	chr8	128719883	128719884	rs10094872	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	8q24.21		rs10094872-T	NR	3E-9		1.1820331	[1.12-1.25]	Affymetrix [7846216] (imputed)	N
1567	chr8	128719883	128719884	rs10094872	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Bladder cancer	2,242 European ancestry cases, 410,350 European ancestry controls	NA	8q24.21		rs10094872-T	NR	3E-11		1.2327416	NR	Affymetrix [7846216] (imputed)	N
1567	chr8	128719883	128719884	rs10094872	29422604	Klein AP	2018-02-08	Nat Commun	Genome-wide meta-analysis identifies five new susceptibility loci for pancreatic cancer.	Pancreatic cancer	9,040 European ancestry cases, 12,496 European ancestry controls	up to 2,737 cases, up to 4,752 controls	8q24.21	MYC	rs10094872-T	0.36	1E-9	(EA)	1.14	[1.10-1.19]	Illumina [11381182] (imputed)	N
1567	chr8	128719883	128719884	rs10094872	27579533	Zhang M	2016-08-01	Oncotarget	Three new pancreatic cancer susceptibility signals identified on chromosomes 1q32.1, 5p15.33 and 8q24.21.	Pancreatic cancer	5,107 European ancestry cases, 8,845 European ancestry controls	6,076 cases, 7,555 controls	8q24.21	MYC	rs10094872-T	0.350	3E-9		1.15	[1.10-1.20]	Illumina [9132527] (imputed)	N
1567	chr8	128719883	128719884	rs10094872	24861552	Rafnar T	2014-05-26	Hum Mol Genet	Genome-wide association study yields variants at 20p12.2 that associate with urinary bladder cancer.	Urinary bladder cancer	1,670 European ancestry cases, 90,180 European ancestry controls	5,241 European ancestry cases, 10,456 European ancestry controls	8q24.21	MYC, POU5F1B, PVT1	rs10094872-T	0.411	2E-7		1.26		Illumina [34200000] (imputed)	N
1567	chr8	128777718	128777719	rs13277355	34103634	Valette K	2021-06-08	Commun Biol	Prioritization of candidate causal genes for asthma in susceptibility loci derived from UK Biobank.	Asthma	56,167 White-British ancestry cases, 352,255 White-British ancestry controls	NA	8q24.21	MYC, GSDMC	rs13277355-G	0.725958857817281	3E-8		0.040560007	[0.026-0.055] unit decrease	Affymetrix [35186738] (imputed)	N
1567	chr8	128777718	128777719	rs13277355	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	8q24.21	MYC	rs13277355-A	0.27	3E-15				NR [> 9500000] (imputed)	N
1567	chr8	128777718	128777719	rs13277355	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	8q24.21	MYC	rs13277355-A	0.274118	1E-14		1.0531645	[1.03937141396756-1.06714063398926]	NR [9572556] (imputed)	N
1567	chr8	128777718	128777719	rs13277355	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	8q24.21	MIR1204	rs13277355-A	0.273948	2E-8		1.0386431	[1.03-1.05]	Affymetrix [8274727] (imputed)	N
1567	chr8	128777718	128777719	rs13277355	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic disease (asthma, hay fever or eczema)	106,772 European ancestry cases, 239,773 European ancestry controls	83,335 cases, 34,934 controls	8q24.21	NR	rs13277355-A	0.2728	6E-13		1.045	[1.033-1.057]	Affymetrix [15688218] (imputed)	N
1567	chr8	128777718	128777719	rs13277355	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (childhood onset)	9,433 British ancestry cases, 318,237 British ancestry controls	NA	8q24.21	MYC, TMEM75	rs13277355-A	0.274	2E-10		1.11	[1.075-1.146]	Affymetrix [10894596] (imputed)	N
1567	chr8	128777718	128777719	rs13277355	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	8q24.21	POU5F1B, MYC	rs13277355-?	NR	1E-23		1.084	[1.07-1.1]	Affymetrix [9000000] (imputed)	N
1567	chr8	128777718	128777719	rs13277355	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	8q24.21	POU5F1B, MYC	rs13277355-A	NR	2E-11		1.052	[1.04-1.07]	Affymetrix [9000000] (imputed)	N
1567	chr8	128777718	128777719	rs13277355	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	8q24.21		rs13277355-?	NR	3E-15				NR [~ 8900000] (imputed)	N
1567	chr8	128777765	128777766	rs13279820	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	8q24.21	NR	rs13279820-?	NR	5E-14				Affymetrix [~ 8270000] (imputed)	N
1567	chr8	128779709	128779710	rs111251130	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	8q24.21		rs111251130-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1567	chr8	128804379	128804380	rs9297768	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	8q24.21	NR	rs9297768-A	0.3335	2E-11		1.043	[1.031-1.055]	Affymetrix [15688218] (imputed)	N
1567	chr8	128809556	128809557	rs6470578	30013184	Waage J	2018-07-16	Nat Genet	Genome-wide association and HLA fine-mapping studies identify risk loci and genetic pathways underlying allergic rhinitis.	Allergic sensitization	8,040 European ancestry cases, 16,441 European ancestry controls	NA	8q24.21	PVT1	rs6470578-?	NR	9E-6		1.11		Affymetrix, Illumina [16531985] (imputed)	N
1567	chr8	128809556	128809557	rs6470578	30013184	Waage J	2018-07-16	Nat Genet	Genome-wide association and HLA fine-mapping studies identify risk loci and genetic pathways underlying allergic rhinitis.	Allergic rhinitis	59,762 European and unknown ancestry cases, 152,358 European and unknown ancestry controls	60,720 European ancestry cases, 618,527 European ancestry controls	8q24.21	TMEM75, MYC	rs6470578-T	0.2818	4E-8		1.05	[1.03-1.07]	Affymetrix, Illumina, Perlegen [16531985] (imputed)	N
1567	chr8	128814090	128814091	rs6990534	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	8q24.21	MIR1204	rs6990534-G	NR	6E-20		1.1020498	NR	Affymetrix, Illumina [8278136] (imputed)	N
1567	chr8	128814090	128814091	rs6990534	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (adrenergics, inhalants)	28,880 European ancestry cases, 147,565 European ancestry controls	NA	8q24.21	PVT1	rs6990534-A	0.293571	6E-9		0.05763252	[0.038-0.077] unit increase	Affymetrix [7288503] (imputed)	N
1567	chr8	128814090	128814091	rs6990534	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	8q24.21	MYC	rs6990534-A	0.36	6E-14		1.042	[1.03-1.05]	Affymetrix, Illumina [8307659] (imputed)	N
1567	chr8	128814090	128814091	rs6990534	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	8q24.21	NR	rs6990534-?	NR	1E-6		0.0435	[0.026-0.061] unit increase	Illumina [at least 560000] (imputed)	N
1567	chr8	128815028	128815029	rs4410871	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	8q24.21	MIR1204	rs4410871-G	0.72	4E-16		1.11		Illumina [161311]	N
1567	chr8	128815028	128815029	rs4410871	23817571	Bonnelykke K	2013-06-30	Nat Genet	Meta-analysis of genome-wide association studies identifies ten loci influencing allergic sensitization.	Allergic sensitization	5,789 European ancestry cases, 10,056 European ancestry controls	6,114 European ancestry cases, 9,920 European ancestry controls	8q24.21	MYC, PVT1	rs4410871-T	0.28	5E-10		1.14	[1.09-1.19]	Affymetrix, Illumina [~ 2500000] (imputed)	N
1567	chr8	128815028	128815029	rs4410871	21833088	Sawcer S	2011-08-11	Nature	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	8q24.21	MYC	rs4410871-G	NR	8E-9		1.11	[1.09-1.12]	Illumina [465434]	N
1567	chr8	128817882	128817883	rs9886651	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	Serous invasive ovarian cancer	14,049 European ancestry cases, 40,941 European ancestry controls	NA	8q24.21	NR	rs9886651-G	0.461222	8E-6		1.0710524	[1.03930535696901-1.10376916464823]	Illumina [11595112] (imputed)	N
1567	chr8	128817882	128817883	rs9886651	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	Epithelial ovarian cancer	16,924 European ancestry cases, 68,502 European ancestry controls	NA	8q24.21	NR	rs9886651-G	0.461222	2E-9		1.0802044	[1.05286500127646-1.10825354962066]	Illumina [11595112] (imputed)	N
1567	chr8	128825577	128825578	rs7815615	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	8q24.21	NR	rs7815615-G	0.58618	5E-13		0.013822	[0.01-0.018] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1567	chr8	128828372	128828372	rs10622381	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	8q24.21	PVT1	rs10622381-CACAA	0.5675	8E-9		0.02171582	[0.014-0.029] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1567	chr8	128828679	128828680	rs4733778	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	8q24.21	NR	rs4733778-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
1567	chr8	128834402	128834403	rs4733789	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	8q24.21	MYC	rs4733789-T	0.46	3E-10		0.025	[0.013-0.037] unit increase	Affymetrix, Illumina [2704730] (imputed)	N
1567	chr8	128837335	128837336	rs7813776	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	8q24.21	PVT1	rs7813776-T	0.587667	2E-9		0.01384593	[0.0094-0.0183] unit decrease	Affymetrix [93095623] (imputed)	N
1567	chr8	128837335	128837336	rs7813776	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q24.21	NR	rs7813776-T	0.585612	5E-12				Affymetrix, Illumina [24588908] (imputed)	N
1567	chr8	128840029	128840030	rs12543944	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	8q24.21		rs12543944-T	NR	4E-11		0.0127	[0.009-0.0164] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1568	chr8	128846434	128846435	rs7832014	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	8q24.21	PVT1	rs7832014-A	0.582	5E-13		0.016563665	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1568	chr8	128869453	128869454	rs6992906	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	8q24.21	NR	rs6992906-G	NR	3E-6	(GEE model)	0.86346	[0.5-1.23] unit increase	NR [NR] (imputed)	N
1568	chr8	128896064	128896065	rs189611038	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Scarlet fever	6,812 European ancestry cases, 113,837 European ancestry controls	NA	8q24.21	NR	rs189611038-?	NR	3E-6		1.4483	[0.71-2.18] unit increase	Illumina [at least 560000] (imputed)	N
1568	chr8	128897078	128897079	rs17775239	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	8q24.21	PVT1	rs17775239-A	0.261514826	3E-6		1.0655429	[1.037624963-1.094212078]	Illumina [10439017] (imputed)	N
1568	chr8	128899446	128899447	rs576418548	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-hip ratio	1,254 whole genome sequenced European ancestry individuals, 3,071 whole genome sequenced individuals, 29,723 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,053 Mylopotamos (founder/genetic isolate) individuals, 879 Pomak (founder/genetic isolate) individuals	206,053 European ancestry individuals	8q24.21	PVT1	rs576418548-A	0.0025	2E-6		0.578	[0.34-0.82] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1568	chr8	128909030	128909031	rs58084056	31993563	Ware EB	2019-11-22	Mayo Clin Proc Innov Qual Outcomes	Genome-wide Association Study of 24-Hour Urinary Excretion of Calcium, Magnesium, and Uric Acid.	Urinary calcium excretion	6,462 European ancestry individuals	NA	8q24.21	PVT1	rs58084056-A	0.21	5E-6		15.23	NR mg increase	NR [NR] (imputed)	N
1568	chr8	128920196	128920197	rs16902460	24132900	Kanazawa T	2013-10-01	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of atypical psychosis.	Psychosis (atypical)	47 Japanese ancestry cases, 882 Japanese ancestry controls	NA	8q24.21	PVT1	rs16902460-?		3E-6				Affymetrix [545513]	N
1568	chr8	128920995	128920996	rs73707118	35131881	Testori A	2022-02-07	Cancer Epidemiol Biomarkers Prev	Genetic analysis in African American children supports ancestry specific neuroblastoma susceptibility.	Neuroblastoma	629 African American cases, 2,990 African American controls	NA	8q24.21		rs73707118-T	NR	5E-6		0.7392	unit increase	Illumina [8524982] (imputed)	N
1568	chr8	128928245	128928246	rs12548864	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	8q24.21	PVT1	rs12548864-T	0.3576	4E-10		0.02316137	[0.016-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1568	chr8	128950556	128950557	rs13263872	28394258	Wild PS	2017-04-10	J Clin Invest	Large-scale genome-wide analysis identifies genetic variants associated with cardiac structure and function.	Left  ventricle systolic dysfunction	30,201 European ancestry individuals	NA	8q24.21	NR	rs13263872-A	0.3471	7E-6		0.166	[0.093-0.239] unit increase	Affymetrix, Illumina [at least 283291] (imputed)	N
1568	chr8	128958770	128958771	rs12548939	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	8q24.21	PVT1	rs12548939-T	0.3299	6E-21		0.03557439	[0.028-0.043] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1568	chr8	128958770	128958771	rs12548939	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	8q24.21	PVT1	rs12548939-T	0.3299	2E-25		0.03970219	[0.032-0.047] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1568	chr8	128961096	128961097	rs60975849	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	8q24.21	PVT1	rs60975849-A	0.334336	3E-12		0.016639743	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1568	chr8	128961096	128961097	rs60975849	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q24.21	NR	rs60975849-A	0.28383	3E-14				Affymetrix, Illumina [21126107] (imputed)	N
1568	chr8	128964064	128964065	rs142500841	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	8q24.21		rs142500841-C	NR	6E-36		0.0317	[0.027-0.037] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
1568	chr8	128965268	128965269	rs56223526	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	8q24.21	PVT1	rs56223526-C	0.350048	1E-52		0.0349629	[0.031-0.039] unit decrease	Affymetrix [93095623] (imputed)	N
1568	chr8	128965268	128965269	rs56223526	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	8q24.21	PVT1	rs56223526-C	0.350055	2E-60		0.038317192	[0.034-0.043] unit decrease	Affymetrix [93095623] (imputed)	N
1568	chr8	128966572	128966573	rs59027521	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	8q24.21		rs59027521-A	0.657	2E-30		0.13	[0.11-0.16] % increase	Affymetrix [NR] (imputed)	N
1568	chr8	128967818	128967819	rs66824612	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	8q24.21		rs66824612-T	NR	3E-40		0.0331	[0.028-0.038] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
1568	chr8	128967818	128967819	rs66824612	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	8q24.21	PVT1	rs66824612-T	0.343745	9E-10		0.0151061	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1568	chr8	128967818	128967819	rs66824612	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	8q24.21	NR	rs66824612-T	0.342559	2E-67		0.033241	[0.029-0.037] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1568	chr8	128967818	128967819	rs66824612	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	8q24.21	NR	rs66824612-T	0.343181	6E-15		0.016478	[0.012-0.021] SD unit decrease	Affymetrix, Illumina [50282193] (imputed)	N
1568	chr8	128967818	128967819	rs66824612	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q24.21	NR	rs66824612-T	0.294599	3E-76				Affymetrix, Illumina [20825802] (imputed)	N
1568	chr8	128967818	128967819	rs66824612	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	8q24.21	NR	rs66824612-T	0.343286	2E-80		0.038581	[0.035-0.043] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
1568	chr8	128967818	128967819	rs66824612	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	8q24.21		rs66824612-?	NR	3E-63				NR [~ 8900000] (imputed)	N
1568	chr8	128971860	128971861	rs66561647	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	8q24.21	intergenic	rs66561647-T		8E-14		0.017	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
1568	chr8	128971860	128971861	rs66561647	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	8q24.21	PVT1	rs66561647-T	0.3439	2E-14		0.02850585	[0.021-0.036] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1568	chr8	128972219	128972220	rs67423398	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q24.21	NR	rs67423398-T	0.292321	4E-30				Affymetrix, Illumina [24653286] (imputed)	N
1568	chr8	128972219	128972220	rs67423398	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	8q24.21	NR	rs67423398-T	0.343305	3E-30		0.022122	[0.018-0.026] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
1568	chr8	128972219	128972220	rs67423398	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q24.21	NR	rs67423398-T	0.293782	2E-17				Affymetrix, Illumina [24558453] (imputed)	N
1568	chr8	128972720	128972721	rs9649959	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	8q24.21	PVT1	rs9649959-G	0.344876	5E-17		0.01953671	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1568	chr8	128972720	128972721	rs9649959	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q24.21	NR	rs9649959-G	0.297844	1E-63				Affymetrix, Illumina [24246363] (imputed)	N
1568	chr8	128972720	128972721	rs9649959	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	8q24.21	NR	rs9649959-G	0.343365	5E-18		0.016819	[0.013-0.021] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
1568	chr8	128973664	128973665	rs7004509	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	8q24.21		rs7004509-G	NR	3E-14		0.0128	[0.0095-0.0161] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
1568	chr8	128973664	128973665	rs7004509	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	8q24.21		rs7004509-G	NR	1E-10		0.0112	[0.0079-0.0145] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
1568	chr8	128973664	128973665	rs7004509	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	8q24.21	PVT1	rs7004509-G	0.490104	3E-11		0.014768106	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
1569	chr8	128990733	128990734	rs6992123	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	8q24.21		rs6992123-?	NR	4E-18				NR [~ 8900000] (imputed)	N
1569	chr8	128992599	128992600	rs12334659	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	8q24.21	PVT1	rs12334659-A	0.533805	2E-11		0.015350409	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1569	chr8	129000498	129000499	rs11997631	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	8q24.21	PVT1	rs11997631-G	0.272276	2E-11		0.016740073	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1569	chr8	129000498	129000499	rs11997631	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	8q24.21	NR	rs11997631-G	0.273556	2E-14		0.016578	[0.012-0.021] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
1569	chr8	129001596	129001597	rs10808564	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q24.21	NR	rs10808564-T	0.301343	1E-11				Affymetrix, Illumina [23114412] (imputed)	N
1569	chr8	129002418	129002419	rs10956401	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	8q24.21		rs10956401-A	NR	2E-19		0.0208	[0.016-0.025] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
1569	chr8	129002418	129002419	rs10956401	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	8q24.21		rs10956401-G	0.657	1E-29				Affymetrix [10369434] (imputed)	N
1569	chr8	129002418	129002419	rs10956401	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	8q24.21		rs10956401-G	0.657	8E-13				Affymetrix [10369434] (imputed)	N
1569	chr8	129002418	129002419	rs10956401	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	8q24.21	PVT1	rs10956401-A	0.342689	1E-28		0.025888832	[0.021-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
1569	chr8	129002418	129002419	rs10956401	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	8q24.21	PVT1	rs10956401-A	0.342698	3E-13		0.01705112	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1569	chr8	129002418	129002419	rs10956401	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q24.21	NR	rs10956401-A	0.319402	2E-34				Affymetrix, Illumina [23472807] (imputed)	N
1569	chr8	129002418	129002419	rs10956401	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	8q24.21	NR	rs10956401-A	0.345058	5E-37		0.025338	[0.021-0.029] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1569	chr8	129002418	129002419	rs10956401	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q24.21	NR	rs10956401-A	0.31667	4E-10				Affymetrix, Illumina [19905671] (imputed)	N
1569	chr8	129002418	129002419	rs10956401	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	8q24.21	NR	rs10956401-A	0.343345	1E-12		0.015337	[0.011-0.02] SD unit decrease	Affymetrix, Illumina [50036608] (imputed)	N
1569	chr8	129002418	129002419	rs10956401	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	8q24.21		rs10956401-?	NR	1E-55				NR [~ 8900000] (imputed)	N
1569	chr8	129004974	129004975	rs11786130	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	8q24.21	PVT1	rs11786130-A	0.3453	1E-21		0.0358321	[0.028-0.043] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1569	chr8	129004974	129004975	rs11786130	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	8q24.21	PVT1	rs11786130-A	0.3453	7E-21		0.03517638	[0.028-0.043] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1569	chr8	129005583	129005584	rs4733817	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	8q24.21	PVT1	rs4733817-A	0.362391	5E-12		0.015910044	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1569	chr8	129005583	129005584	rs4733817	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	8q24.21	PVT1	rs4733817-A	0.362451	7E-42		0.031237477	[0.027-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
1569	chr8	129007206	129007207	rs10956403	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	8q24.21		rs10956403-A	0.655	1E-15				Affymetrix [10369434] (imputed)	N
1569	chr8	129007206	129007207	rs10956403	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q24.21	NR	rs10956403-G	0.316937	5E-59				Affymetrix, Illumina [19872809] (imputed)	N
1569	chr8	129007206	129007207	rs10956403	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	8q24.21	NR	rs10956403-G	0.345731	5E-57		0.033229	[0.029-0.037] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
1569	chr8	129007206	129007207	rs10956403	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	8q24.21	PVT1	rs10956403-G	0.3455	6E-16		0.03028105	[0.023-0.038] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1569	chr8	129007411	129007412	rs10808565	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	8q24.21		rs10808565-?	NR	2E-6		1.05485	[1.03-1.08]	NR [685523]	N
1569	chr8	129007411	129007412	rs10808565	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	8q24.21	PVT1	rs10808565-T	0.345135	5E-54		0.03603069	[0.031-0.041] unit decrease	Affymetrix [93095623] (imputed)	N
1569	chr8	129007411	129007412	rs10808565	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	8q24.21	PVT1	rs10808565-T	0.3458	9E-16		0.03030501	[0.023-0.038] unit increase	Affymetrix [~ 2500000] (imputed)	N
1569	chr8	129007411	129007412	rs10808565	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	8q24.21	PVT1	rs10808565-T	0.3458	3E-15		0.02981585	[0.022-0.037] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1569	chr8	129012573	129012574	rs10087240	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	8q24.21		rs10087240-C	0.543	1E-12				Affymetrix [10369434] (imputed)	N
1569	chr8	129012573	129012574	rs10087240	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q24.21	NR	rs10087240-T	0.505807	2E-25				Affymetrix, Illumina [24649327] (imputed)	N
1569	chr8	129012573	129012574	rs10087240	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	8q24.21	NR	rs10087240-T	0.457631	6E-27		0.019951	[0.016-0.024] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
1569	chr8	129012573	129012574	rs10087240	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	8q24.21	PVT1	rs10087240-T	0.4564	4E-11		0.02401676	[0.017-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
1569	chr8	129012573	129012574	rs10087240	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	8q24.21	PVT1	rs10087240-T	0.4562	5E-11		0.02405023	[0.017-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
1569	chr8	129014696	129014697	rs4733823	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	8q24.21	PVT1	rs4733823-T	0.456243	3E-23		0.022083953	[0.018-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1569	chr8	129014696	129014697	rs4733823	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	8q24.21	PVT1	rs4733823-T	0.456248	5E-9		0.053653162	[0.036-0.072] unit increase	Affymetrix [7288503] (imputed)	N
1569	chr8	129014696	129014697	rs4733823	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	8q24.21		rs4733823-?	NR	1E-20				NR [~ 8900000] (imputed)	N
1569	chr8	129016069	129016070	rs4733589	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota (alpha diversity)	858 Metropolitan French ancestry individuals	NA	8q24.21	NR	rs4733589-?	NR	8E-6	(ACE metric)	0.75802	[0.43-1.09] unit increase	Illumina [5293637] (imputed)	N
1569	chr8	129035707	129035708	rs137956473	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SPTLC2	5,354 Icelandic ancestry individuals	NA	8q24.21		rs137956473-T	0.01529	6E-12		0.165502	[0.12-0.21] unit increase	Illumina [7506463] (imputed)	N
1569	chr8	129053751	129053751	rs541244374	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	8q24.21		rs541244374-GTT	NR	2E-11		0.0177	[0.012-0.023] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
1569	chr8	129056462	129056462	rs534849558	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	8q24.21	PVT1	rs534849558-T	0.507613	2E-11		0.0160856	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1569	chr8	129059109	129059110	rs11775301	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	8q24.21		rs11775301-C	NR	4E-9		0.0117	[0.0078-0.0156] unit increase	Affymetrix, Illumina [20536605] (imputed)	N
1569	chr8	129059109	129059110	rs11775301	33602968	Skuladottir AT	2021-02-18	Sci Rep	A meta-analysis uncovers the first sequence variant conferring risk of Bell's palsy.	Bell's palsy	4,714 European ancestry cases, 1,011,520 European ancestry controls	NA	8q24.21	MIR1207, PVT1	rs11775301-T	0.4448	7E-6		0.90919	NR	Affymetrix, Illumina [30341632] (imputed)	N
1569	chr8	129060803	129060804	rs2720659	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	8q24.21	NR	rs2720659-A	NR	7E-10		0.0161	[0.011-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
1569	chr8	129060803	129060804	rs2720659	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	8q24.21	NR	rs2720659-A	NR	4E-13		0.019	[0.014-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
1569	chr8	129060803	129060804	rs2720659	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	8q24.21	PVT1	rs2720659-A	0.343424	3E-13		0.01694328	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1569	chr8	129060803	129060804	rs2720659	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	8q24.21	PVT1	rs2720659-A	0.343443	3E-10		0.014647852	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
1569	chr8	129061784	129061785	rs2648862	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8q24.21	FAM84B	rs2648862-?	NR	6E-6	(PC 40:6)	0.56995434	[0.32-0.82] unit increase	Affymetrix [at least 2500000] (imputed)	N
1569	chr8	129072160	129072161	rs2648875	17395743	Hanson RL	2007-04-01	Diabetes	Identification of PVT1 as a candidate gene for end-stage renal disease in type 2 diabetes using a pooling-based genome-wide single nucleotide polymorphism association study.	End-stage renal disease	105 Pima Indian ancestry cases, 102 Pima Indian ancestry controls	NA	8q24.21	PVT1	rs2648875-A	0.53	2E-6		2.97	[1.90-4.65]	Affymetrix [115352]	N
1569	chr8	129073949	129073950	rs73710129	32080893	Divers J	2020-02-20	Clin Transplant	GWAS for time to failure of kidney transplants from African American deceased donors.	Graft survival time in renal transplantation (donor effect) x APOL1 genotype interaction	532 African American donors	250 African American donors	8q24.21	PVT1	rs73710129-?	NR	7E-7		1.22	NR unit increase	Illumina [> 13000000] (imputed)	N
1569	chr8	129074901	129074902	rs1499363	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	8q24.21	PVT1	rs1499363-G	0.558782	4E-15		0.017867653	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1569	chr8	129075831	129075832	rs2608053	21037568	Enciso-Mora V	2010-10-31	Nat Genet	A genome-wide association study of Hodgkin's lymphoma identifies new susceptibility loci at 2p16.1 (REL), 8q24.21 and 10p14 (GATA3).	Hodgkin's lymphoma	589 European ancestry cases, 5,199 European ancestry controls	2,057 European ancestry cases, 3,416 European ancestry controls	8q24.21	PVT1	rs2608053-G	0.52	1E-7		1.2	[1.12-1.28]	Illumina [504374]	N
1569	chr8	129076283	129076284	rs2608052	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	8q24.21	PVT1	rs2608052-C	0.577086	2E-9		0.0134004615	[0.009-0.0178] unit decrease	Affymetrix [93095623] (imputed)	N
1569	chr8	129076450	129076451	rs13254990	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	8q24.21	PVT1	rs13254990-T	NR	6E-8		1.0632641	NR	Affymetrix, Illumina [8278136] (imputed)	N
1569	chr8	129076450	129076451	rs13254990	31102405	Labreche K	2019-05-17	Neuro Oncol	A genome-wide association study identifies susceptibility loci for primary central nervous system lymphoma at 6p25.3 and 3p22.1: a LOC network study.	Primary central nervous system lymphoma	475 European ancestry cases, 1,134 European ancestry controls	NA	8q24.21	PTV1	rs13254990-T	0.33	1E-7		1.54	[1.31-1.81]	Illumina [> 10000000] (imputed)	N
1569	chr8	129076450	129076451	rs13254990	25279986	Skibola CF	2014-10-02	Am J Hum Genet	Genome-wide association study identifies five susceptibility loci for follicular lymphoma outside the HLA region.	Follicular lymphoma	2,728 European ancestry cases, 7,758 European ancestry controls	1,795 European ancestry cases, 5,586 European ancestry controls	8q24.21	PVT1	rs13254990-T	0.315	1E-8		1.18	[1.11-1.24]	Illumina [up to 21554489]	N
1569	chr8	129076508	129076509	rs2720665	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	8q24.21	NR	rs2720665-T	NR	4E-12		0.0172	[0.012-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
1569	chr8	129076572	129076573	rs13255292	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Malignant lymphoma	3,546 European ancestry cases, 487,257 European ancestry controls, 335 East Asian ancestry cases, 177,342 East Asian ancestry controls	NA	8q24.21		rs13255292-T	NR	5E-10		0.1546	[0.11-0.2] unit increase	Affymetrix, Illumina [25845276] (imputed)	N
1569	chr8	129076572	129076573	rs13255292	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Non-Hodgkin's lymphoma	2,400 European ancestry cases, 410,350 European ancestry controls	NA	8q24.21		rs13255292-T	NR	8E-8		1.1777176	NR	Affymetrix [7846216] (imputed)	N
1569	chr8	129076572	129076573	rs13255292	25261932	Cerhan JR	2014-09-28	Nat Genet	Genome-wide association study identifies multiple susceptibility loci for diffuse large B cell lymphoma.	Diffuse large B cell lymphoma	3,857 European ancestry cases, 7,666 European ancestry controls	1,359 European ancestry cases, 4,557 European ancestry controls	8q24.21	MYC, PVT1	rs13255292-T	0.321	1E-12		1.22	[1.15-1.29]	Illumina [8363971] (imputed)	N
1569	chr8	129093835	129093836	rs17467140	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	8q24.21	PVT1	rs17467140-C	0.193968	6E-12		0.019644218	[0.014-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1569	chr8	129095847	129095848	rs56249148	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 23)	2,187 European ancestry individuals	NA	8q24.21	NR	rs56249148-A	0.04379	7E-7		0.3684	[0.22-0.51] unit increase	Illumina [10677593] (imputed)	N
1569	chr8	129103994	129103995	rs34167917	33483693	Clements CC	2021-01-22	Mol Psychiatry	Genome-wide association study of patients with a severe major depressive episode treated with electroconvulsive therapy.	Major depressive disorder and major depressive episode treated with electroconvulsive therapy	1,796 European ancestry cases, 3,290 European ancestry controls	NA	8q24.21	NR	rs34167917-?	NR	3E-6		1.2225	[1.14-1.31]	Illumina [NR] (imputed)	N
1570	chr8	129115216	129115217	rs2720680	28112199	Law PJ	2017-01-23	Sci Rep	Genome-wide association analysis of chronic lymphocytic leukaemia, Hodgkin lymphoma and multiple myeloma identifies pleiotropic risk loci.	B-cell malignancies (chronic lymphocytic leukemia, Hodgkin lymphoma or multiple myeloma) (pleiotropy)	1,842 European ancestry chronic lymphocytic leukemia cases, 1,465 European ancestry Hodgkin lymphoma cases, 3,790 European ancestry multiple myeloma cases, 7,324 European ancestry controls	NA	8q24.21	PVT1	rs2720680-G	NR	7E-8				Illumina [10806625] (imputed)	N
1570	chr8	129126852	129126853	rs5029317	24529757	Xie T	2014-01-17	Neurobiol Aging	Genome-wide association study combining pathway analysis for typical sporadic amyotrophic lateral sclerosis in Chinese Han populations.	Amyotrophic lateral sclerosis (sporadic)	250 Han Chinese ancestry cases, 250 Han Chinese ancestry controls	NA	8q24.21	PVT1	rs5029317-?		8E-6				Illumina [859311]	N
1570	chr8	129131131	129131132	rs74859538	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	8q24.21		rs74859538-A	NR	4E-9		0.0288	[0.019-0.038] unit increase	Affymetrix, Illumina [20529698] (imputed)	N
1570	chr8	129139205	129139206	rs17382698	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal cancer	978 Austrian ancestry colorectal cancer cases, 636 Austrian ancestry advanced colorectal adenoma cases, , 855 Austrian ancestry controls	NA	8q24.21	Intergenic	rs17382698-?		9E-6		1.522	[NR]	Affymetrix [492217] (imputed)	N
1570	chr8	129150667	129150668	rs2648832	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	8q24.21	NR	rs2648832-?	NR	6E-7		0.0465	[0.028-0.065] unit increase	Illumina [at least 560000] (imputed)	N
1570	chr8	129155361	129155362	rs62513191	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	8q24.21	NR	rs62513191-C	NR	1E-9		0.036	[0.024-0.048] unit increase	Affymetrix [9000000] (imputed)	N
1570	chr8	129155361	129155362	rs62513191	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	8q24.21	NR	rs62513191-T	0.956226	5E-11		0.0320524	[0.022-0.042] unit decrease	NR [NR]	N
1570	chr8	129157015	129157016	rs2111567	32581359	Saevarsdottir S	2020-06-24	Nature	FLT3 stop mutation increases FLT3 ligand level and risk of autoimmune thyroid disease.	Autoimmune thyroid disease	30,234 European ancestry cases, 724,172 European ancestry controls	NA	8q24.21	NR	rs2111567-A	0.5532	1E-10		1.0638298	[NR]	Affymetrix, Illumina [42900000] (imputed)	N
1570	chr8	129158944	129158945	rs759648	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	8q24.21	MIR1208	rs759648-C	0.31	5E-10		1.08		Illumina [161311]	N
1570	chr8	129162496	129162497	rs10956412	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	8q24.21		rs10956412-?	NR	2E-12				NR [~ 8900000] (imputed)	N
1570	chr8	129163294	129163295	rs12676304	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	8q24.21		rs12676304-?	NR	1E-30				NR [~ 8900000] (imputed)	N
1570	chr8	129165055	129165056	rs1121948	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	8q24.21		rs1121948-G	NR	4E-30		0.0171	[0.014-0.02] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1570	chr8	129165055	129165056	rs1121948	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	8q24.21		rs1121948-G	0.313683	1E-10		0.0138834	[0.0096-0.0181] unit increase	Illumina [13479295] (imputed)	N
1570	chr8	129170125	129170126	rs2608029	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	8q24.21	MIR1208	rs2608029-G	0.334001	2E-8		0.015409	[0.01-0.021] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1570	chr8	129170125	129170126	rs2608029	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung adenocarcinoma	11,273 European ancestry cases,  55,483 European ancestry controls	NA	8q24.21	MIR1208, LINC00824	rs2608029-G	0.350969507	1E-6		1.0843331	[1.049207162-1.12063491]	Illumina [10439017] (imputed)	N
1570	chr8	129170125	129170126	rs2608029	22936693	Juran BD	2012-08-29	Hum Mol Genet	Immunochip analyses identify a novel risk locus for primary biliary cirrhosis at 13q14, multiple independent associations at four established risk loci and epistasis between 1p31 and 7q32 risk variants.	Primary biliary cirrhosis	2,216 European ancestry cases, 5,594 Europen ancestry controls	NA	8q24.21	NR	rs2608029-C		3E-6		1.23	[1.13-1.34]	Illumina [109812]	N
1570	chr8	129176340	129176340	rs11409208	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8q24.21	MIR1208	rs11409208-GA	NR	5E-8		0.0168553	[0.011-0.023] unit decrease	Affymetrix [321114] (imputed)	N
1570	chr8	129179089	129179090	rs13280095	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	8q24.21	MIR1208	rs13280095-?	NR	2E-7		1.098901	[1.05-1.14]	Illumina [at least 5000000] (imputed)	N
1570	chr8	129179925	129179926	rs1499364	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	8q24.21		rs1499364-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1570	chr8	129185103	129185104	rs1902789	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	8q24.21	PVT1	rs1902789-A	0.7493	3E-27		0.0236	[0.019-0.028] unit decrease	Affymetrix [18391927] (imputed)	N
1570	chr8	129190543	129190544	rs12156002	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls	NA	8q24.21	PVT1, BC009730	rs12156002-?	NR	3E-7		1.1494253	[1.09-1.22]	Illumina [at least 5000000] (imputed)	N
1570	chr8	129192270	129192271	rs2019960	24920014	Cozen W	2014-06-12	Nat Commun	A meta-analysis of Hodgkin lymphoma reveals 19p13.3 TCF3 as a novel susceptibility locus.	Hodgkin's lymphoma	1,816 European ancestry cases, 7,877 European ancestry controls	1,281 European ancestry cases, 3,218 European ancestry controls	8q24.21	intergenic	rs2019960-C	0.22	7E-8		1.3	[1.18-1.43]	Affymetrix, Illumina [1004829] (imputed)	N
1570	chr8	129192270	129192271	rs2019960	24149102	Frampton M	2013-10-22	Nat Commun	Variation at 3p24.1 and 6q23.3 influences the risk of Hodgkin's lymphoma.	Hodgkin's lymphoma	1,465 European ancestry cases, 6,417 European ancestry controls	1,071 European ancestry cases, 953 cases, 1,853 controls	8q24.21	NR	rs2019960-G	0.23	6E-10		1.37	[NR]	Illumina [296129]	N
1570	chr8	129192270	129192271	rs2019960	21833088	Sawcer S	2011-08-11	Nature	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	8q24.21	PVT1	rs2019960-G	NR	5E-9	(Conditioned on rs4410871)	1.12	[1.1-1.13]	Illumina [465434]	N
1570	chr8	129192270	129192271	rs2019960	21037568	Enciso-Mora V	2010-10-31	Nat Genet	A genome-wide association study of Hodgkin's lymphoma identifies new susceptibility loci at 2p16.1 (REL), 8q24.21 and 10p14 (GATA3).	Hodgkin's lymphoma	589 European ancestry cases, 5,199 European ancestry controls	2,057 European ancestry cases, 3,416 European ancestry controls	8q24.21	PVT1	rs2019960-G	0.23	1E-13		1.33	[1.23-1.44]	Illumina [504374]	N
1570	chr8	129194640	129194641	rs11780156	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	8q24.21		rs11780156-T	NR	2E-9		1.05	[1.03-1.06]	Affymetrix, Illumina [NR] (imputed)	N
1570	chr8	129194640	129194641	rs11780156	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	8q24.21	MYC	rs11780156-T	0.17	1E-13	(EA)	1.05	[1.03-1.08] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
1570	chr8	129194640	129194641	rs11780156	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	46,785 European ancestry cases, 42,892 European ancestry controls	NA	8q24.21	NR	rs11780156-T	0.16	8E-7		1.07	[1.04-1.09]	Affymetrix, Illumina [~ 14000000] (imputed)	N
1570	chr8	129194640	129194641	rs11780156	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	15,748 European ancestry cases, 18,084 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls	8q24.21	NR	rs11780156-T	0.16	2E-9		1.07	[1.04-1.09]	Affymetrix, Illumina [~ 11600000] (imputed)	N
1570	chr8	129194640	129194641	rs11780156	23535729	Michailidou K	2013-04-01	Nat Genet	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	8q24.21	MYC, MIR1208	rs11780156-T	0.16	3E-11		1.07	[1.04-1.10]	Affymetrix, Illumina [~ 2600000] (imputed)	N
1570	chr8	129197902	129197903	rs6992491	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	8q24.21	MIR1208, LINC00824	rs6992491-?	NR	7E-14		0.022297693	[0.016-0.028] unit increase	Illumina [27896057] (imputed)	N
1570	chr8	129199913	129199914	rs3802173	27432226	Kar SP	2016-07-17	Cancer Discov	Genome-Wide Meta-Analyses of Breast, Ovarian, and Prostate Cancer Association Studies Identify Multiple New Susceptibility Loci Shared by at Least Two Cancer Types.	Breast cancer, ovarian cancer or prostate cancer (pleiotropy)	62,533 European ancestry breast cancer female cases, 60,976 European ancestry controls, 15,437 European ancestry invasive epithelial ovarian cancer female cases, 30,845 European ancestry controls, 34,379 European ancestry prostate cancer male cases, 33,164 European ancestry controls	NA	8q24.21	MIR1208/PVT1	rs3802173-T	0.2261	3E-11		0.0521	[0.037-0.068] unit increase	Illumina [NR]	N
1570	chr8	129204261	129204262	rs7017073	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	8q24.21	7SK	rs7017073-C	0.213216	1E-8		0.06342499	[0.042-0.085] unit decrease	Affymetrix [7288503] (imputed)	N
1570	chr8	129204261	129204262	rs7017073	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	8q24.21	NR	rs7017073-C	0.2115	2E-14	(EA)	0.0572	[0.043-0.072] unit increase	Illumina [~ 11800000] (imputed)	N
1570	chr8	129204572	129204573	rs11299600	27723758	Bronson PG	2016-10-10	Nat Genet	Common variants at PVT1, ATG13-AMBRA1, AHI1 and CLEC16A are associated with selective IgA deficiency.	Selective IgA deficiency	1,635 European ancestry cases, 4,852 European ancestry controls	NA	8q24.21	PVT1	rs11299600-T	0.747	4E-11		0.73	[NR]	Illumina [up to 9464381] (imputed)	N
1570	chr8	129220072	129220073	rs11995854	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	8q24.21	TMEM75	rs11995854-C	0.277	8E-6	(Diet carbohydrate )	0.04	[NR] g/d increase	Illumina [899892]	N
1570	chr8	129224693	129224694	rs12678162	32581322	Kakuta Y	2020-06-24	Sci Rep	An Integrated Genomic and Transcriptomic Analysis Reveals Candidates of Susceptibility Genes for Crohn's Disease in Japanese Populations.	Crohn's disease	713 Japanese ancestry cases, 2,063 Japanese ancestry controls	NA	8q24.21	PVT1	rs12678162-?	NR	3E-6		1.06	[1.03-1.08]	NR [7424691] (imputed)	N
1570	chr8	129227951	129227952	rs2042011	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	8q24.21	MIR1208, RN7SKP226	rs2042011-?	NR	4E-8	(subset analysis)			Illumina [130052]	N
1571	chr8	129246414	129246415	rs10492294	20694011	Ferreira RC	2010-08-08	Nat Genet	Association of IFIH1 and other autoimmunity risk alleles with selective IgA deficiency.	Immunoglobulin A	430 European ancestry cases, 1,090 European ancestry controls	342 European ancestry cases, 886 European ancestry controls	8q24.21	PVT1	rs10492294-?	0.81	4E-6		1.49	[1.27-1.75]	Illumina [2057134] (imputed)	N
1571	chr8	129264419	129264420	rs4733851	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	8,021 European ancestry cases, 16,489 European ancestry controls, 2,495 East Asian ancestry cases, 4,283 East Asian ancestry controls	NA	8q24.21		rs4733851-G	NR	5E-8		0.113331	[0.073-0.154] unit decrease	NR [2787054] (imputed)	N
1571	chr8	129264419	129264420	rs4733851	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	8,021 European ancestry cases, 16,489 European ancestry controls	NA	8q24.21		rs4733851-A	NR	2E-7		0.114437	[0.071-0.158] unit increase	NR [5054572] (imputed)	N
1571	chr8	129264588	129264589	rs9792269	20190752	Dubois PC	2010-02-28	Nat Genet	Multiple common variants for celiac disease influencing immune gene expression.	Celiac disease	4,533 European ancestry cases, 10,750 European ancestry controls	4,918 European ancestry cases, 5,684 European ancestry controls	8q24.21	intergenic	rs9792269-?	0.76	3E-9		1.14	[1.10-1.19]	Illumina [292387]	N
1571	chr8	129269465	129269466	rs4733601	25261932	Cerhan JR	2014-09-28	Nat Genet	Genome-wide association study identifies multiple susceptibility loci for diffuse large B cell lymphoma.	Diffuse large B cell lymphoma	3,857 European ancestry cases, 7,666 European ancestry controls	1,359 European ancestry cases, 4,557 European ancestry controls	8q24.21	MYC, PVT1	rs4733601-A	0.477	4E-11		1.19	[1.12-1.25]	Illumina [8363971] (imputed)	N
1571	chr8	129280948	129280949	rs11775199	23934736	Yu B	2013-08-11	Genet Epidemiol	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels (Dihydroxy docosatrienoic acid)	1,260 African American individuals	NA	8q24.21	PVT1	rs11775199-A		7E-6		0.11	[0.06-0.16] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1571	chr8	129286234	129286235	rs188809019	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	8q24.21	Intergenic	rs188809019-T	0.997	4E-6	(AA)	0.827	NR unit increase	Illumina [NR] (imputed)	N
1571	chr8	129294117	129294118	rs1989051	33772158	Hoggart C	2021-03-26	Eur J Hum Genet	Identification of novel locus associated with coronary artery aneurysms and validation of loci for susceptibility to Kawasaki disease.	Coronary artery aneurysm in Kawasaki disease	200 European ancestry cases, 276 European ancestry controls	NA	8q24.21	intergenic	rs1989051-C	0.57	4E-6		2.2	[1.6-3.1]	Illumina [4873589] (imputed)	N
1571	chr8	129309159	129309160	rs11775388	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8q24.21	MLZE	rs11775388-?	NR	5E-7	(TAG 58:8)	0.27795127	[0.17-0.39] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1571	chr8	129316013	129316014	rs975730	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	8q24.21		rs975730-A	0.353	8E-15		0.17391433	[0.13-0.22] mmHg decrease	Affymetrix, Illumina [242865] (imputed)	N
1571	chr8	129316013	129316014	rs975730	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	8q24.21		rs975730-A	0.3527	3E-8		0.08316902	[0.05-0.117] mmHg decrease	Affymetrix, Illumina [242866] (imputed)	N
1571	chr8	129316013	129316014	rs975730	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	8q24.21		rs975730-A	0.3527	1E-9		0.09030164	[0.061-0.12] mmHg decrease	Affymetrix, Illumina [242866] (imputed)	N
1571	chr8	129316013	129316014	rs975730	21383967	Zhernakova A	2011-02-24	PLoS Genet	Meta-analysis of genome-wide association studies in celiac disease and rheumatoid arthritis identifies fourteen non-HLA shared loci.	Celiac disease or Rheumatoid arthritis	4,533 European ancestry celiac disease cases, 5,539 European ancestry rheumatoid arthritis cases, 27,981 European ancestry controls	2,169 European ancestry celiac disease cases, 2,845 European ancestry rheumatoid arthritis cases, 7,199 European ancestry controls	8q24.21	intergenic	rs975730-?	NR	2E-8				Illumina [472854]	N
1571	chr8	129343198	129343199	rs7014841	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	8q24.21		rs7014841-?	NR	8E-9				NR [~ 8900000] (imputed)	N
1572	chr8	129383674	129383675	rs4380895	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	8q24.21		rs4380895-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1572	chr8	129412827	129412828	rs7841408	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	8q24.21		rs7841408-?	NR	8E-8				NR [~ 8900000] (imputed)	N
1572	chr8	129425592	129425593	rs16902895	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	8q24.21	LINC00824	rs16902895-A	0.678	1E-13		1.122	[1.09-1.15]	Illumina [11270530] (imputed)	N
1572	chr8	129427517	129427518	rs7815944	33536424	Wang YF	2021-02-03	Nat Commun	Identification of 38 novel loci for systemic lupus erythematosus and genetic heterogeneity between ancestral groups.	Systemic lupus erythematosus	4,222 Han Chinese ancestry cases, 8,431 Han Chinese ancestry controls, 4,576 European ancestry cases, 8,039 European ancestry controls	NA	8q24.21	LINC00824	rs7815944-G	NR	2E-9		0.87	[0.82-0.92]	Illumina [NR] (imputed)	N
1572	chr8	129427517	129427518	rs7815944	33536424	Wang YF	2021-02-03	Nat Commun	Identification of 38 novel loci for systemic lupus erythematosus and genetic heterogeneity between ancestral groups.	Systemic lupus erythematosus	4,222 Han Chinese ancestry cases, 8,431 Han Chinese ancestry controls	NA	8q24.21	LINC00824	rs7815944-G	NR	2E-9		0.862	[0.81-0.91]	Illumina [5719137] (imputed)	N
1572	chr8	129427517	129427518	rs7815944	23042114	Hirota T	2012-10-07	Nat Genet	Genome-wide association study identifies eight new susceptibility loci for atopic dermatitis in the Japanese population.	Atopic dermatitis	1,472 Japanese ancestry cases, 7,971 Japanese ancestry controls	1,856 Japanese ancestry cases, 7,021 Japanese ancestry controls	8q24.21	MIR1208	rs7815944-A	0.673	4E-7		1.16	[1.10-1.23]	Illumina [606164]	N
1572	chr8	129445863	129445863	rs35286446	30093612	O'Mara TA	2018-08-09	Nat Commun	Identification of nine new susceptibility loci for endometrial cancer.	Endometrial cancer	12,906 European ancestry cases, 108,979 European ancestry controls	NA	8q24.21	MYC	rs35286446-GAT	0.58	3E-9		1.1	[1.06-1.13]	Affymetrix, Illumina [~ 11700000] (imputed)	N
1572	chr8	129451696	129451697	rs17804358	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	8q24.21	intergenic	rs17804358-T	0.5441	3E-11		0.1773	[0.12-0.23] mmHg increase	Affymetrix [NR] (imputed)	N
1572	chr8	129464912	129464913	rs62525374	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		LINC00824	rs62525374-?	NR	2E-8	(female)	0.205372	[NR] unit increase	Affymetrix [NR] (imputed)	N
1572	chr8	129483955	129483956	rs4598218	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	8q24.21	RP11-89M16.1	rs4598218-T	0.6118	2E-12		0.1797	[0.13-0.23] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1572	chr8	129492155	129492156	rs116216559	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	7,894 Sub-Saharan African ancestry individuals	NA	8q24.21		rs116216559-G	0.967444	8E-7		0.0259214	[0.016-0.036] unit decrease	Illumina [13900000] (imputed)	N
1572	chr8	129492155	129492156	rs116216559	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,931 Sub-Saharan African ancestry males	NA	8q24.21		rs116216559-G	0.970109	8E-6		0.0354135	[0.02-0.051] unit decrease	Illumina [13900000] (imputed)	N
1573	chr8	129531185	129531186	rs11785816	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Autoimmune traits	approximately 459,000 European ancestry individuals	NA	8q24.21		rs11785816-?	NR	4E-10				NR [~ 8900000] (imputed)	N
1573	chr8	129535263	129535264	rs67824503	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung adenocarcinoma	11,273 European ancestry cases,  55,483 European ancestry controls	NA	8q24.21	LINC00824	rs67824503-T	0.752921326	1E-7		1.1081239	[1.07-1.15]	Illumina [10439017] (imputed)	N
1573	chr8	129537745	129537746	rs17232730	27135401	Cheng TH	2016-05-02	Nat Genet	Five endometrial cancer risk loci identified through genome-wide association analysis.	Endometrial cancer	2,082 European ancestry endometrioid cases, 130 European ancestry cases,  9,544 European ancestry controls	4,553 European ancestry endometrioid cases, 972 European ancestry cases, 27,600 European ancestry controls	8q24.21	MYC	rs17232730-G	0.88	4E-7		1.14	[1.07-1.2]	Illumina [up to 2300000] (imputed)	N
1573	chr8	129541930	129541931	rs1400482	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	Serous invasive ovarian cancer	14,049 European ancestry cases, 40,941 European ancestry controls	NA	8q24.21	NR	rs1400482-G	0.867974	2E-24		1.2746594	[1.21607733088533-1.33606352682139]	Illumina [11595112] (imputed)	N
1573	chr8	129541930	129541931	rs1400482	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	Serous borderline ovarian cancer	1,954 European ancestry cases, 40,941 European ancestry controls	NA	8q24.21	NR	rs1400482-G	0.867974	2E-12		1.4812524	[1.32210226140915-1.65956066549562]	Illumina [11595112] (imputed)	N
1573	chr8	129541930	129541931	rs1400482	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	Low-grade serous and serous borderline ovarian cancer	2,966 European ancestry cases, 40,941 European ancestry controls	NA	8q24.21	NR	rs1400482-G	0.867974	1E-16		1.465133	[1.33389097997879-1.60928789514469]	Illumina [11595112] (imputed)	N
1573	chr8	129541930	129541931	rs1400482	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	Invasive epithelial ovarian cancer	22,406 European ancestry cases, 40,941 European ancestry controls	NA	8q24.21	NR	rs1400482-G	0.867974	7E-16		1.1769707	[1.13116083835271-1.22463593511406]	Illumina [11595112] (imputed)	N
1573	chr8	129541930	129541931	rs1400482	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	High-grade serous ovarian cancer	13,037 European ancestry cases, 40,941 European ancestry controls	NA	8q24.21	NR	rs1400482-G	0.867974	7E-22		1.2638669	[1.20425676967645-1.32642773080558]	Illumina [11595112] (imputed)	N
1573	chr8	129541930	129541931	rs1400482	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	Epithelial ovarian cancer	16,924 European ancestry cases, 68,502 European ancestry controls	NA	8q24.21	NR	rs1400482-G	0.867974	7E-26		1.232938	[1.18577432499114-1.28197774659809]	Illumina [11595112] (imputed)	N
1573	chr8	129542099	129542100	rs1516971	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	8q24.21	PVT1	rs1516971-T	NR	9E-7		0.115098	[0.07-0.161] unit increase	Illumina [8380626] (imputed)	N
1573	chr8	129542099	129542100	rs1516971	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	8q24.21	PVT1	rs1516971-T	0.87	5E-7	(EA)	0.1199	[0.073-0.167] unit increase	Illumina [8380626] (imputed)	N
1573	chr8	129542099	129542100	rs1516971	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	8q24.21	PVT1	rs1516971-T	0.89	1E-10		1.15	[1.10-1.20]	Affymetrix, Illumina [up to 9739303] (imputed)	N
1573	chr8	129542099	129542100	rs1516971	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	8q24.21	PVT1	rs1516971-T	0.87	3E-11	(EA)	1.16	[1.11-1.21]	Affymetrix, Illumina [up to 9739303] (imputed)	N
1573	chr8	129543948	129543949	rs10088218	25581431	Kuchenbaecker KB	2015-01-12	Nat Genet	Identification of six new susceptibility loci for invasive epithelial ovarian cancer.	Epithelial ovarian cancer	4,368 European ancestry cases, 9,123 European ancestry controls,	2,462 European ancestry BRCA1 mutation carrier cases, 12,790 European ancestry BRCA1 mutation carrier controls, up to 631 European ancestry BRCA2 mutation carrier cases, 7,580 European ancestry BRCA2 mutation carrier controls, 9,627 European ancestry serous cases, 1,442 European ancestry non-serous cases, 21,722 European ancestry controls	8q24.21	CMYC	rs10088218-A	0.13	1E-20		1.2987013	[1.22-1.37]	Illumina [up to 10962898] (imputed)	N
1573	chr8	129543948	129543949	rs10088218	23535730	Pharoah PD	2013-04-01	Nat Genet	GWAS meta-analysis and replication identifies three new susceptibility loci for ovarian cancer.	Ovarian cancer	3,769 European ancestry cases, 4,396 European ancestry controls	211 East Asian ancestry cases, 972 East Asian ancestry controls, 39,674 European ancestry individuals, 106 Malaysian ancestry cases, 106 Malaysian ancestry controls	8q24.21	NR	rs10088218-?	0.87	1E-17	(Serious invasive)	1.29	[1.21-1.36]	Illumina [2508744] (imputed)	N
1573	chr8	129543948	129543949	rs10088218	23535730	Pharoah PD	2013-04-01	Nat Genet	GWAS meta-analysis and replication identifies three new susceptibility loci for ovarian cancer.	Ovarian cancer	3,769 European ancestry cases, 4,396 European ancestry controls	211 East Asian ancestry cases, 972 East Asian ancestry controls, 39,674 European ancestry individuals, 106 Malaysian ancestry cases, 106 Malaysian ancestry controls	8q24.21	MYC	rs10088218-?	0.87	3E-12	(All invasive)	1.18	[1.13-1.24]	Illumina [2508744] (imputed)	N
1573	chr8	129543948	129543949	rs10088218	20852632	Goode EL	2010-09-19	Nat Genet	A genome-wide association study identifies susceptibility loci for ovarian cancer at 2q31 and 8q24.	Ovarian cancer	1,768 European ancestry cases, 2,354 European ancestry controls	8,709 European ancestry cases, 51,764 European ancestry controls	8q24.21	MYC, THEM75	rs10088218-G	NR	3E-9		1.19	[1.12-1.25]	Illumina [2056878] (imputed)	N
1573	chr8	129547377	129547378	rs12676584	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Pancreas iron content	25,617 European ancestry individuals	NA	8q24.21	NR	rs12676584-?	NR	3E-8		0.0521	NR mg/g decrease	Affymetrix [9390170] (imputed)	N
1573	chr8	129558350	129558351	rs7819154	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Pancreas volume	31,758 European ancestry individuals	NA	8q24.21	NR	rs7819154-?	NR	6E-15		0.0654	NR L decrease	Affymetrix [9390170] (imputed)	N
1573	chr8	129567180	129567181	rs6651252	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	8q24.21	Intergenic	rs6651252-?		6E-7				Illumina [9725440] (imputed)	N
1573	chr8	129567180	129567181	rs6651252	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	8q24.21	Intergenic	rs6651252-?		9E-11				Illumina [9560910] (imputed)	N
1573	chr8	129567180	129567181	rs6651252	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	8q24.21	RP11-89M16.1	rs6651252-?	NR	2E-17	(subset analysis)			Illumina [130052]	N
1573	chr8	129567180	129567181	rs6651252	26546613	Gutierrez-Achury J	2016-01-01	Hum Mol Genet	Functional implications of disease-specific variants in loci jointly associated with coeliac disease and rheumatoid arthritis.	Celiac disease and Rheumatoid arthritis	371 South Asian ancestry celiac disease cases, 3,138 European ancestry celiac disease cases,  4,418 European ancestry rheumatoid arthritis cases,  509 South Asian ancestry celiac disease controls, 2,473 European ancestry celiac disease controls, 3,300 European ancestry rheumatoid arthritis controls, 8,872 celiac disease cases, 9,401 rheumatoid arthritis cases, 4,845 celiac disease controls, 9,627 rheumatoid arthritis controls	NA	8q24.21	PVT1, MIR1208, LINC00977	rs6651252-?	NR	8E-9		0.89		Illumina [109572]	N
1573	chr8	129567180	129567181	rs6651252	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	8q24.21	NR	rs6651252-A	0.87	9E-10	(EA)	1.095103		Affymetrix, Illumina [~ 9000000] (imputed)	N
1573	chr8	129567180	129567181	rs6651252	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	8q24.21	NR	rs6651252-A	0.87	4E-16	(EA)	1.1607062	[1.12-1.2]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1573	chr8	129567180	129567181	rs6651252	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Crohn's disease	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls	8q24.21	intergenic	rs6651252-T	0.865	1E-16		1.185	[1.128-1.246]	Affymetrix, Illumina [1230000] (imputed)	N
1573	chr8	129567180	129567181	rs6651252	21102463	Franke A	2010-11-21	Nat Genet	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry trios	8q24.21	intergenic	rs6651252-T	0.865	4E-18		1.23	[1.17-1.30]	Affymetrix, Illumina [953241] (imputed)	N
1573	chr8	129568060	129568061	rs1561928	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	8q24.21	TMEM75	rs1561928-A	0.117334	2E-9		0.0186122	[0.013-0.025] unit decrease	Affymetrix [NR] (imputed)	N
1573	chr8	129568077	129568078	rs1561927	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	8q24.21	NR	rs1561927-C	0.2821	9E-12		0.0352	[0.025-0.045] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1573	chr8	129568077	129568078	rs1561927	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	8q24.21	NR	rs1561927-C	0.31	5E-13		0.0332	[0.024-0.042] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1573	chr8	129568077	129568078	rs1561927	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	8q24.21	PVT1	rs1561927-C	0.2686	2E-9		1.04	[1.03-1.06]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1573	chr8	129568077	129568078	rs1561927	29422604	Klein AP	2018-02-08	Nat Commun	Genome-wide meta-analysis identifies five new susceptibility loci for pancreatic cancer.	Pancreatic cancer	9,040 European ancestry cases, 12,496 European ancestry controls	up to 2,737 cases, up to 4,752 controls	8q24.21	MIR1208	rs1561927-T	0.74	7E-8		1.1235955	[1.08-1.18]	Illumina [11381182] (imputed)	N
1573	chr8	129568077	129568078	rs1561927	25086665	Wolpin BM	2014-08-03	Nat Genet	Genome-wide association study identifies multiple susceptibility loci for pancreatic cancer.	Pancreatic cancer	1,582 European ancestry cases, 5,203 European ancestry controls	6,101 European ancestry cases, 9,194 European ancestry controls	8q24.21	LINC00977, MIR1208, PVT1, MYC	rs1561927-T	0.721	1E-7		1.15	[1.09-1.2]	Illumina [608202]	N
1573	chr8	129568077	129568078	rs1561927	24509480	Mahajan A	2014-02-09	Nat Genet	Genome-wide trans-ancestry meta-analysis provides insight into the genetic architecture of type 2 diabetes susceptibility.	Type 2 diabetes	12,171 European ancestry cases, 56,862 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls	21,491 European ancestry cases, 55,647 European ancestry controls	8q24.21	TMEM75	rs1561927-C		1E-7		1.06	[1.04-1.09]	Affymetrix, Illumina [2500000] (imputed)	N
1573	chr8	129569370	129569371	rs1561924	32581359	Saevarsdottir S	2020-06-24	Nature	FLT3 stop mutation increases FLT3 ligand level and risk of autoimmune thyroid disease.	Autoimmune thyroid disease	30,234 European ancestry cases, 724,172 European ancestry controls	NA	8q24.21	NR	rs1561924-G	0.8683	8E-10		1.0869565	[NR]	Affymetrix, Illumina [42900000] (imputed)	N
1573	chr8	129569370	129569371	rs1561924	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	8q24.21	RP11-89M16.1	rs1561924-A	0.126271	2E-10		0.087239884	[0.06-0.114] unit decrease	Affymetrix [7288503] (imputed)	N
1573	chr8	129569370	129569371	rs1561924	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	8q24.21		rs1561924-?	NR	3E-12				NR [~ 8900000] (imputed)	N
1573	chr8	129569998	129569999	rs4733612	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Pancreas fat	25,617 European ancestry individuals	NA	8q24.21	NR	rs4733612-?	NR	9E-12		0.0656	NR % decrease	Affymetrix [9390170] (imputed)	N
1573	chr8	129599277	129599278	rs4733613	30093612	O'Mara TA	2018-08-09	Nat Commun	Identification of nine new susceptibility loci for endometrial cancer.	Endometrial cancer (endometrioid histology)	8,758 European ancestry cases, 46,126 European ancestry controls	NA	8q24.21	MYC	rs4733613-C	0.12374600000000002	1E-13		1.21	[1.15-1.28]	Affymetrix, Illumina [~ 11700000] (imputed)	N
1573	chr8	129599277	129599278	rs4733613	30093612	O'Mara TA	2018-08-09	Nat Commun	Identification of nine new susceptibility loci for endometrial cancer.	Endometrial cancer	12,906 European ancestry cases, 108,979 European ancestry controls	NA	8q24.21	MYC	rs4733613-C	0.12	8E-14		1.18	[1.13-1.24]	Affymetrix, Illumina [~ 11700000] (imputed)	N
1573	chr8	129599277	129599278	rs4733613	28394258	Wild PS	2017-04-10	J Clin Invest	Large-scale genome-wide analysis identifies genetic variants associated with cardiac structure and function.	Left  ventricle systolic dysfunction	30,201 European ancestry individuals	NA	8q24.21	NR	rs4733613-C	0.1202	9E-7		0.267	[0.16-0.37] unit increase	Affymetrix, Illumina [at least 283291] (imputed)	N
1573	chr8	129599277	129599278	rs4733613	27135401	Cheng TH	2016-05-02	Nat Genet	Five endometrial cancer risk loci identified through genome-wide association analysis.	Endometrial endometrioid carcinoma	2,082 European ancestry cases, 9,544 European ancestry controls	4,553 European ancestry cases, 27,600 European ancestry controls	8q24.21	MYC	rs4733613-C	0.13	8E-9		1.1904762	[1.12-1.27]	Illumina [up to 2300000] (imputed)	N
1573	chr8	129599277	129599278	rs4733613	27135401	Cheng TH	2016-05-02	Nat Genet	Five endometrial cancer risk loci identified through genome-wide association analysis.	Endometrial cancer	2,082 European ancestry endometrioid cases, 130 European ancestry cases,  9,544 European ancestry controls	4,553 European ancestry endometrioid cases, 972 European ancestry cases, 27,600 European ancestry controls	8q24.21	MYC	rs4733613-C	0.13	3E-9		1.1904762	[1.12-1.25]	Illumina [up to 2300000] (imputed)	N
1574	chr8	129642131	129642132	rs1443125	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Perceived unattractiveness to mosquitoes	16,576 European ancestry individuals	NA	8q24.21	intergenic	rs1443125-T	NR	3E-6		0.231629	[0.13-0.33] unit decrease	Illumina [7433384] (imputed)	N
1574	chr8	129693447	129693448	rs140596460	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	8q24.21	NR	rs140596460-?	NR	4E-8				Illumina [7760689] (imputed)	N
1574	chr8	129693447	129693448	rs140596460	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	8q24.21	NR	rs140596460-?	NR	1E-8				Illumina [7760689] (imputed)	N
1574	chr8	129695008	129695009	rs11783015	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	8q24.21		rs11783015-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1575	chr8	129771786	129771787	rs76729148	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	8q24.21	NR	rs76729148-T	0.0906059	1E-14		0.0416646	[0.031-0.052] unit decrease	NR [19129689] (imputed)	N
1575	chr8	129787975	129787976	rs10956445	24709693	Cobb J	2014-04-08	Pharmacogenomics J	Genome-wide data reveal novel genes for methotrexate response in a large cohort of juvenile idiopathic arthritis cases.	Response to methotrexate in juvenile idiopathic arthritis	694 European ancestry child cases	NA	8q24.21	ADCY8, PVT1	rs10956445-C	NR	5E-7	(AJC)	2.73	[1.67-3.79] unit decrease	Illumina [586062]	N
1575	chr8	129788887	129788888	rs75273312	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	8q24.21		rs75273312-?	NR	1E-13				NR [~ 8900000] (imputed)	N
1575	chr8	129827640	129827641	rs72726582	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	8q24.21	LINC00824	rs72726582-T	0.91534	8E-10		0.0206805	[0.014-0.027] unit increase	NR [13737936] (imputed)	N
1575	chr8	129859923	129859924	rs13277797	33547071	Bonfante B	2021-02-05	Sci Adv	A GWAS in Latin Americans identifies novel face shape loci, implicating VPS13B and a Denisovan introgressed region in facial variation.	Facial morphology (philtrum length)	6,169 Latin American individuals	NA	8q24.21		rs13277797-?	NR	2E-8				Illumina [8703729] (imputed)	N
1575	chr8	129863647	129863648	rs871502	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 4)	3,566 European ancestry individuals	4,680 European ancestry individuals	8q24.21		rs871502-G	0.210415497	3E-8				Illumina [7417619] (imputed)	N
1575	chr8	129864592	129864593	rs17818958	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 2)	19,670 European ancestry individuals	NA	8q24.21		rs17818958-?	NR	1E-10				NR [9705931] (imputed)	N
1575	chr8	129876191	129876192	rs72728705	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	8q24.21	NR	rs72728705-G	0.189021	8E-20		0.0362848	[0.028-0.044] unit increase	NR [19129689] (imputed)	N
1575	chr8	129890187	129890188	rs17241253	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	8q24.21		rs17241253-?	NR	2E-14				NR [~ 8900000] (imputed)	N
1576	chr8	129899293	129899294	rs117352232	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Major depressive disorder	10,865 European ancestry female cases, 12,753 European ancestry female controls, 5,105 European ancestry male cases, 12,231 European ancestry male controls	NA	8q24.21	LINC00824, LINC00976	rs117352232-A	0.9857	6E-7	(male)	0.4191	[0.25-0.58] unit decrease	NR [NR] (imputed)	N
1576	chr8	129914247	129914248	rs7009139	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	8q24.21		rs7009139-?	NR	1E-13				NR [~ 8900000] (imputed)	N
1576	chr8	129916889	129916890	rs1519845	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	8q24.21		rs1519845-G	NR	2E-11		0.013	[0.0093-0.0167] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
1576	chr8	129926514	129926515	rs4568584	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q24.21	NR	rs4568584-T	0.75381	2E-12				Affymetrix, Illumina [24649327] (imputed)	N
1576	chr8	129933719	129933720	rs72728734	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip and palate	121 Asian ancestry cases, 159 European ancestry cases, 285 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	8q24.21	NR	rs72728734-?	NR	5E-15		1.63	[1.49-1.78]	Illumina [539000] (imputed)	N
1576	chr8	129933719	129933720	rs72728734	28054174	Leslie EJ	2017-01-04	Hum Genet	Genome-wide meta-analyses of nonsyndromic orofacial clefts identify novel associations between FOXE1 and all orofacial clefts, and TP63 and cleft lip with or without cleft palate.	Orofacial clefts	83 Asian ancestry cases, 1,445 Asian ancestry case-parent trios, 161 Asian ancestry controls, 208 European ancestry cases, 1,284 European ancestry case-parent trios, 835 European ancestry controls, 610 Latino or African cases, 663 Latino or African case-parent trios, 704 Latino or African controls, 35 case-parent trios.	NA	8q24.21	intergenic	rs72728734-?	NR	5E-20	(EA)	1.76	[1.56-1.98]	Illumina [6090031] (imputed)	N
1576	chr8	129933719	129933720	rs72728734	28054174	Leslie EJ	2017-01-04	Hum Genet	Genome-wide meta-analyses of nonsyndromic orofacial clefts identify novel associations between FOXE1 and all orofacial clefts, and TP63 and cleft lip with or without cleft palate.	Cleft lip with or without cleft palate	83 Asian ancestry cases, 1,173 Asian ancestry case-parent trios, 161 Asian ancestry controls,170 European ancestry cases, 988 European ancestry case-parent trios, 835 European ancestry controls, 570 Latino or African cases, 629 Latino or African case-parent trios, 704 Latino or African controls, 21 case-parent trios.	NA	8q24.21	intergenic	rs72728734-?	NR	6E-26	(EA)	2.06	[1.81-2.35]	Illumina [6090031] (imputed)	N
1576	chr8	129946153	129946154	rs987525	32373937	Dardani C	2020-05-06	Int J Epidemiol	Cleft lip/palate and educational attainment: cause, consequence or correlation? A Mendelian-randomization study.	Cleft lip with or without cleft palate	1,692 European ancestry cases, 4,259 European ancestry controls	NA	8q24.21	NR	rs987525-?	NR	1E-40		0.7106	[0.61-0.81] unit increase	NR [7618724] (imputed)	N
1576	chr8	129946153	129946154	rs987525	22863734	Ludwig KU	2012-08-05	Nat Genet	Genome-wide meta-analyses of nonsyndromic cleft lip with or without cleft palate identify six new risk loci.	Orofacial clefts	Up to 666 European ancestry trios, 399 European ancestry cases, 1,318 European ancestry controls	up to 795 East Asian ancestry trios	8q24.21	NR	rs987525-A	NR	5E-35	(Meta-All, NSCL/P)	1.919	[1.66-2.218]	NR [497084]	N
1576	chr8	129946153	129946154	rs987525	22863734	Ludwig KU	2012-08-05	Nat Genet	Genome-wide meta-analyses of nonsyndromic cleft lip with or without cleft palate identify six new risk loci.	Orofacial clefts	Up to 666 European ancestry trios, 399 European ancestry cases, 1,318 European ancestry controls	up to 795 East Asian ancestry trios	8q24.21	NR	rs987525-A	NR	2E-11	(Meta-All, NSCLO)			NR [497084]	N
1576	chr8	129946153	129946154	rs987525	22863734	Ludwig KU	2012-08-05	Nat Genet	Genome-wide meta-analyses of nonsyndromic cleft lip with or without cleft palate identify six new risk loci.	Orofacial clefts	Up to 666 European ancestry trios, 399 European ancestry cases, 1,318 European ancestry controls	up to 795 East Asian ancestry trios	8q24.21	NR	rs987525-A	NR	1E-26	(Meta-All, NSCLP)			NR [497084]	N
1576	chr8	129946153	129946154	rs987525	20436469	Beaty TH	2010-05-02	Nat Genet	A genome-wide association study of cleft lip with and without cleft palate identifies risk variants near MAFB and ABCA4.	Cleft lip	825 European ancestry trios, 1,038 Asian ancestry trios	2,194 Asian ancestry family members, 322 South Asian ancestry family members, 3,830 European ancestry family members, 1,769 South and Central American ancestry family members	8q24.21	intergenic	rs987525-A	0.17	4E-16		1.78	[1.55-2.05]	Illumina [589945]	N
1576	chr8	129946153	129946154	rs987525	19656524	Grant SF	2009-08-03	J Pediatr	A genome-wide association study identifies a locus for nonsyndromic cleft lip with or without cleft palate on 8q24.	Orofacial clefts	111 European ancestry cases, 5,951 European ancestry controls	NA	8q24.21	intergenic	rs987525-?	0.22	9E-8		2.09	[1.59-2.76]	Illumina [495858]	N
1576	chr8	129946153	129946154	rs987525	19270707	Birnbaum S	2009-03-08	Nat Genet	Key susceptibility locus for nonsyndromic cleft lip with or without cleft palate on chromosome 8q24.	Orofacial clefts	224 European ancestry cases, 383 European ancestry controls	246 cases, 954 controls	8q24.21	GSDMC, PVT1	rs987525-A	0.20	3E-24		2.57	[2.02-3.26]	Illumina [521176]	N
1576	chr8	129950322	129950323	rs1372448	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	8q24.21		rs1372448-A	NR	3E-9		0.0139	[0.0094-0.0184] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
1576	chr8	129950322	129950323	rs1372448	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	8q24.21	LINC00976	rs1372448-T	0.621343	8E-13		0.00171648	[0.0012-0.0022] unit decrease	Affymetrix [13995440] (imputed)	N
1576	chr8	129950322	129950323	rs1372448	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	8q24.21	MYC, GSDMC	rs1372448-A	0.38	1E-8		5.73	z-score increase	Affymetrix [4311822] (imputed)	N
1576	chr8	129950322	129950323	rs1372448	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	8q24.21	NR	rs1372448-A	NR	4E-9		0.0145	[0.0096-0.0194] unit increase	Affymetrix [9000000] (imputed)	N
1576	chr8	129950389	129950390	rs1372449	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	8q24.21		rs1372449-A	0.38	1E-24		10.27	z score increase	Affymetrix [9061022] (imputed)	N
1576	chr8	129950843	129950844	rs7017252	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	8q24.21	NR	rs7017252-T	NR	4E-10		0.016	[0.011-0.021] unit increase	Affymetrix [9000000] (imputed)	N
1576	chr8	129950843	129950844	rs7017252	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	8q24.21	NR	rs7017252-?		8E-11				NR [7428630] (imputed)	N
1576	chr8	129950843	129950844	rs7017252	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	8q24.21	LINC00977	rs7017252-C	0.616271	4E-12		0.013634	[0.0098-0.0175] unit decrease	NR [13737936] (imputed)	N
1576	chr8	129950843	129950844	rs7017252	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	8q24.21		rs7017252-?	NR	3E-14		0.0154619	[0.011-0.02] unit decrease	Affymetrix [20259828] (imputed)	N
1576	chr8	129950843	129950844	rs7017252	28232668	Yu Y	2017-02-24	Nat Commun	Genome-wide analyses of non-syndromic cleft lip with palate identify 14 novel loci and genetic heterogeneity.	Nonsyndromic cleft lip with cleft palate	2,033 Han Chinese ancestry cases, 4,051 Han Chinese ancestry controls	1,346 Han Chinese ancestry cases, 4,542 Han Chinese ancestry controls	8q24.21	MYC, LOC728724	rs7017252-A	0.05	8E-16		1.6		Illumina [803202]	N
1576	chr8	129951768	129951769	rs7815993	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	8q24.21		rs7815993-T	0.38	1E-10		6.45	z score increase	Affymetrix [9061022] (imputed)	N
1576	chr8	129951768	129951769	rs7815993	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	8q24.21	NR	rs7815993-T	0.3742	1E-9				NR [9056863] (imputed)	N
1576	chr8	129951768	129951769	rs7815993	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	8q24.21	NR	rs7815993-T	0.3742	1E-15				NR [9056863] (imputed)	N
1576	chr8	129964872	129964873	rs17242358	34130359	Curtis SW	2021-06-15	Genet Epidemiol	FAT4 identified as a potential modifier of orofacial cleft laterality.	Right unilateral cleft lip	43 Asian ancestry cases, 40 European ancestry cases, 47 Hispanic cases, 1,626 controls	NA	8q24.21	NR	rs17242358-?		5E-7		2.49	[1.74-3.55]	Illumina [539473] (imputed)	N
1576	chr8	129964872	129964873	rs17242358	34130359	Curtis SW	2021-06-15	Genet Epidemiol	FAT4 identified as a potential modifier of orofacial cleft laterality.	Right unilateral cleft lip	43 Asian ancestry cases, 40 European ancestry cases, 47 Hispanic cases, 1,626 controls	NA	8q24.21	NR	rs17242358-?		5E-7		2.49	[1.74-3.55]	Illumina [539473] (imputed)	N
1576	chr8	129964872	129964873	rs17242358	28054174	Leslie EJ	2017-01-04	Hum Genet	Genome-wide meta-analyses of nonsyndromic orofacial clefts identify novel associations between FOXE1 and all orofacial clefts, and TP63 and cleft lip with or without cleft palate.	Orofacial clefts	83 Asian ancestry cases, 1,445 Asian ancestry case-parent trios, 161 Asian ancestry controls, 208 European ancestry cases, 1,284 European ancestry case-parent trios, 835 European ancestry controls, 610 Latino or African cases, 663 Latino or African case-parent trios, 704 Latino or African controls, 35 case-parent trios.	NA	8q24.21	Intergenic	rs17242358-?	NR	6E-37		1.4925373	[1.32-1.69] (GENEVA cohort)	Illumina [6090031] (imputed)	N
1576	chr8	129965592	129965593	rs72728744	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung adenocarcinoma	11,273 European ancestry cases,  55,483 European ancestry controls	NA	8q24.21	LINC00824, LINC00977	rs72728744-T	0.049520896	3E-6		1.1889769	[1.105240549-1.279057458]	Illumina [10439017] (imputed)	N
1576	chr8	129976135	129976136	rs55658222	34130359	Curtis SW	2021-06-15	Genet Epidemiol	FAT4 identified as a potential modifier of orofacial cleft laterality.	Right unilateral cleft lip and palate	59 Asian ancestry cases, 94 European ancestry cases, 263 Hispanic cases, 1,626 controls	NA	8q24.21	NR	rs55658222-?		2E-8		1.93	[1.53-2.43]	Illumina [539473] (imputed)	N
1576	chr8	129976135	129976136	rs55658222	34130359	Curtis SW	2021-06-15	Genet Epidemiol	FAT4 identified as a potential modifier of orofacial cleft laterality.	Left unilateral cleft lip and palate	98 Asian ancestry cases, 199 European ancestry cases, 340 Hispanic cases, 1 case, 1,626 controls	NA	8q24.21	NR	rs55658222-?		3E-13		1.99	[1.65-2.39]	Illumina [539473] (imputed)	N
1576	chr8	129976135	129976136	rs55658222	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Unilateral cleft lip and palate	205 Asian ancestry cases, 315 European ancestry cases, 692 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	8q24.21	NR	rs55658222-?	NR	4E-18		1.59	[1.48-1.7]	Illumina [539000] (imputed)	N
1576	chr8	129976135	129976136	rs55658222	28054174	Leslie EJ	2017-01-04	Hum Genet	Genome-wide meta-analyses of nonsyndromic orofacial clefts identify novel associations between FOXE1 and all orofacial clefts, and TP63 and cleft lip with or without cleft palate.	Cleft lip with or without cleft palate	83 Asian ancestry cases, 1,173 Asian ancestry case-parent trios, 161 Asian ancestry controls,170 European ancestry cases, 988 European ancestry case-parent trios, 835 European ancestry controls, 570 Latino or African cases, 629 Latino or African case-parent trios, 704 Latino or African controls, 21 case-parent trios.	NA	8q24.21	Intergenic	rs55658222-?	NR	8E-44		2.13	[1.78-2.54] (GENEVA cohort)	Illumina [6090031] (imputed)	N
1576	chr8	129984955	129984956	rs199882851	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	8q24.21	CCDC26	rs199882851-CA	0.4998	4E-15		0.015	[0.011-0.019] unit decrease	Affymetrix [18391927] (imputed)	N
1576	chr8	129985439	129985440	rs11787407	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	8q24.21		rs11787407-G	0.513264	5E-9		0.013010495	[0.0087-0.0174] unit increase	Affymetrix [93095623] (imputed)	N
1576	chr8	129986236	129986237	rs9297779	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	8q24.21		rs9297779-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1576	chr8	129989734	129989735	rs7017026	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	8q24.21		rs7017026-T	0.49	1E-13		7.41	z score increase	Affymetrix [9061022] (imputed)	N
1576	chr8	129990381	129990382	rs72728755	33898419	Mukhopadhyay N	2021-04-09	Front Cell Dev Biol	Genome-Wide Association Study of Non-syndromic Orofacial Clefts in a Multiethnic Sample of Families and Controls Identifies Novel Regions.	Nonsyndromic cleft lip with or without cleft palate	154 African ancestry cases, 274 African ancestry controls, 445 Asian ancestry cases, 1,246 Asian ancestry controls, 569 European ancestry cases, 2,704 European ancestry controls, 1,050 Central and South American cases, 2,988 Central and South American controls, 3 cases, 14 controls	NA	8q24.21	NR	rs72728755-A		3E-29		0.48	[0.38-0.58] unit increase	Illumina [NR] (imputed)	N
1576	chr8	129990381	129990382	rs72728755	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Unilateral cleft lip	184 Asian ancestry cases, 151 European ancestry cases, 167 Hispanic cases, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	8q24.21	NR	rs72728755-?	NR	2E-10		1.46	[1.32-1.6]	Illumina [539000] (imputed)	N
1576	chr8	129990381	129990382	rs72728755	33137956	Yang Y	2020-10-29	Genes (Basel)	Secondary Genome-Wide Association Study Using Novel Analytical Strategies Disentangle Genetic Components of Cleft Lip and/or Cleft Palate in 1q32.2.	Orofacial clefts	160 African ancestry cases, 584 Asian ancestry cases, 1,068 European ancestry cases, 37 Native American ancestry cases, 849 admixed ancestry cases, 5 cases, 219 African ancestry controls, 1,433 Asian ancestry controls, 3,563 European ancestry controls, 152 Native American ancestry controls, 2,420 admixed ancestry controls, 52 controls	NA	8q24.21	NR	rs72728755-?	NR	2E-22		0.08	[0.064-0.096] unit increase	Illumina [at least 589945] (imputed)	N
1576	chr8	129996584	129996585	rs112704402	34130359	Curtis SW	2021-06-15	Genet Epidemiol	FAT4 identified as a potential modifier of orofacial cleft laterality.	Left unilateral cleft lip	68 Asian ancestry cases, 78 European ancestry cases, 70 Hispanic cases, 1,626 controls	NA	8q24.21	NR	rs112704402-?		6E-7		2.08	[1.56-2.78]	Illumina [539473] (imputed)	N
1576	chr8	130005447	130005448	rs10481172	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	8q24.21		rs10481172-?	NR	7E-13				NR [~ 8900000] (imputed)	N
1577	chr8	130028599	130028600	rs9643242	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	8q24.21		rs9643242-?	NR	8E-17				NR [~ 8900000] (imputed)	N
1577	chr8	130051648	130051649	rs10109509	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	8q24.21	Intergenic	rs10109509-T	0.7079	6E-9	(MTAG)	0.0084	[0.0057-0.0111] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1577	chr8	130095477	130095478	rs11784932	32959083	Adewuyi EO	2020-09-21	Hum Genet	Genetic analysis of endometriosis and depression identifies shared loci and implicates causal links with gastric mucosa abnormality.	Endometriosis or depression (pleiotropy)	17,054 endometriosis cases, 170,756 European ancestry depression cases, 191,858 controls, 329,443 European ancestry controls	NA	8q24.21	NR	rs11784932-A		3E-8		0.0258772	[0.017-0.035] unit increase	NR [6694342]	N
1577	chr8	130107053	130107054	rs12548560	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	8q24.21	Intergenic	rs12548560-A	0.6848	2E-9	(MTAG)	0.0106	[0.0071-0.0141] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1577	chr8	130116849	130116850	rs28540589	26423011	Wain LV	2015-09-27	Lancet Respir Med	Novel insights into the genetics of smoking behaviour, lung function, and chronic obstructive pulmonary disease (UK BiLEVE): a genetic association study in UK Biobank.	Lung function in never smokers (low FEV1 vs high FEV1)	9,745 European ancestry individuals with low FEV1 measurements, 4,902 European ancestry individuals with high FEV1 measurements	NA	8q24.21	LINC00824, LINC00977	rs28540589-A	0.912	4E-7		1.2594458	[1.15-1.38]	Affymetrix [28509962] (imputed)	N
1577	chr8	130130603	130130604	rs6470697	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	8q24.21		rs6470697-?	NR	1E-12				NR [~ 8900000] (imputed)	N
1578	chr8	130156142	130156143	rs4617118	29348612	Wiemels JL	2018-01-18	Nat Commun	GWAS in childhood acute lymphoblastic leukemia reveals novel genetic associations at chromosomes 17q12 and 8q24.21.	Acute lymphoblastic leukemia (childhood)	1,949 Latino cases, 8,584 Latino controls, 1,184 European ancestry cases, 3551 European ancestry controls, 130 African American cases, 3,842 African American controls	959 European ancestry cases,  2,624 European ancestry controls, 530 Latino cases, 511 Latino controls	8q24.21	intergenic	rs4617118-G	NR	2E-12		1.28	[1.19-1.37]	Affymetrix [757935]	N
1578	chr8	130176903	130176904	rs77269791	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	8q24.21		rs77269791-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1578	chr8	130182670	130182671	rs79207438	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	8q24.21		rs79207438-T	0.115599	9E-12		0.023818238	[0.017-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
1578	chr8	130182793	130182794	rs74756667	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	334,468 European ancestry, NR ancestry individuals	NA	8q24.21		rs74756667-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1578	chr8	130182793	130182794	rs74756667	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	8q24.21		rs74756667-A	0.115648	5E-13		0.025194796	[0.018-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
1578	chr8	130185175	130185176	rs75777619	31767839	Vijayakrishnan J	2019-11-25	Nat Commun	Identification of four novel associations for B-cell acute lymphoblastic leukaemia risk.	B-cell acute lymphoblastic leukaemia	5,321 European ancestry cases, 16,666 European ancestry controls	2,237 cases, 3,461 controls	8q24.21	intergenic	rs75777619-G	0.12	2E-9		1.26	[1.17-1.36]	Affymetrix, Illumina [~ 6118121] (imputed)	N
1578	chr8	130194103	130194104	rs28665337	29632299	Vijayakrishnan J	2018-04-09	Nat Commun	Genome-wide association study identifies susceptibility loci for B-cell childhood acute lymphoblastic leukemia.	Acute lymphoblastic leukemia in childhood (B cell precursor)	2,442 European ancestry cases, 14,609 European ancestry controls	NA	8q24.21	LINC00977	rs28665337-?	0.12	4E-9		1.34	[1.21-1.47]	Illumina [6755715] (imputed)	N
1578	chr8	130284838	130284839	rs13271259	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	8q24.21	intergenic	rs13271259-A	0.0157789657645866	3E-6	(O_Lactobacillales_HB)	1.29179	[0.75-1.83] unit decrease	Illumina [7711310] (imputed)	N
1579	chr8	130371637	130371638	rs75834729	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	150,266 East Asian ancestry individuals	NA	8q24.21		rs75834729-T	0.291783	5E-9		0.0182833	[0.012-0.024] unit decrease	Illumina [13478778] (imputed)	N
1579	chr8	130371637	130371638	rs75834729	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Glomerular filtration rate	143,658 Japanese ancestry individuals	NA	8q24.21	CCDC26	rs75834729-?	NR	2E-10		0.02594	[0.018-0.034] unit increase novel	Illumina [6108953] (imputed)	N
1579	chr8	130371637	130371638	rs75834729	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Creatinine levels	142,097 Japanese ancestry individuals	NA	8q24.21	CCDC26	rs75834729-?	NR	2E-9		0.02413	[0.016-0.032] unit decrease novel	Illumina [6108953] (imputed)	N
1579	chr8	130393376	130393377	rs7002803	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	334,468 European ancestry, NR ancestry individuals	NA	8q24.21		rs7002803-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1580	chr8	130427650	130427651	rs2719209	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	8q24.21		rs2719209-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1580	chr8	130450345	130450346	rs2217589	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	334,468 European ancestry, NR ancestry individuals	NA	8q24.21		rs2217589-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1580	chr8	130457534	130457535	rs5894994	29532581	Hallfors J	2018-03-13	Addict Biol	Genome-wide association study in Finnish twins highlights the connection between nicotine addiction and neurotrophin signaling pathway.	Nicotine dependence	873 Finnish ancestry cases and 842 Finnish ancestry controls from 739 families	NA	8q24.21	NR	rs5894994-A	0.34552	5E-6		0.0818196	[0.05-0.12] unit decrease	Illumina [9469131] (imputed)	N
1580	chr8	130468064	130468065	rs72714236	32386320	Eckel-Passow JE	2020-05-09	Neuro Oncol	Adult Diffuse Glioma GWAS by Molecular Subtype Identifies Variants in D2HGDH and FAM20C.	Adult diffuse glioma (IDH mutation, 1p/19q non-codeleted)	316 European and unknown ancestry cases, 1,889 European and unknown ancestry controls	245 European and unknown ancestry cases, 808 European and unknown ancestry controls	8q24.21	CCDC26	rs72714236-?	NR	5E-9		5.833	NR z score decrease	Illumina [NR] (imputed)	N
1580	chr8	130468064	130468065	rs72714236	32386320	Eckel-Passow JE	2020-05-09	Neuro Oncol	Adult Diffuse Glioma GWAS by Molecular Subtype Identifies Variants in D2HGDH and FAM20C.	Adult diffuse glioma (IDH mutation only)	241 European and unknown ancestry cases, 1,889 European and unknown ancestry controls	214 European and unknown ancestry cases, 808 European and unknown ancestry controls	8q24.21	CCDC26	rs72714236-?	NR	4E-8		5.485	NR z score decrease	Illumina [NR] (imputed)	N
1580	chr8	130478804	130478805	rs138703641	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	334,468 European ancestry, NR ancestry individuals	NA	8q24.21		rs138703641-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1580	chr8	130479730	130479731	rs11786929	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Uterine fibroids	21,024 European ancestry cases, 237,694 European ancestry controls, 14,475 East Asian ancestry cases, 65,733 East Asian ancestry controls	NA	8q24.21		rs11786929-C	NR	2E-9		0.0544	[0.037-0.072] unit increase	Affymetrix, Illumina [25795146] (imputed)	N
1580	chr8	130483337	130483338	rs12543365	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Lateral occipital cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	8q24.21	NR	rs12543365-?		9E-7				Illumina [4322238] (imputed)	N
1580	chr8	130486167	130486168	rs1835847	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	8q24.21	NR	rs1835847-T	0.4	3E-8		0.0103	[0.0066-0.014] unit increase	NR [NR]	N
1580	chr8	130491164	130491165	rs17262815	25108383	Geller F	2014-08-10	Nat Genet	Genome-wide association analyses identify variants in developmental genes associated with hypospadias.	Hypospadias	1,006 European ancestry male child cases, 2,390 European ancestry male child controls, 3,096 European ancestry female child controls	1,972 European ancestry male child cases, 1,401 European ancestry male child controls, 405 European ancestry female child controls, 6 European ancestry child controls	8q24.21	CCDC26	rs17262815-C	0.154	2E-12		1.36	[NR]	Illumina [8207076] (imputed)	N
1580	chr8	130491751	130491752	rs891835	19578367	Shete S	2009-07-05	Nat Genet	Genome-wide association study identifies five susceptibility loci for glioma.	Glioma	1,878 European ancestry cases, 3,670 European ancestry controls	2,545 European ancestry cases, 2,953 European ancestry controls	8q24.21	CCDC26	rs891835-G	0.79	8E-11		1.24	[1.17-1.30]	Illumina [454576]	N
1580	chr8	130515452	130515453	rs72714270	32386320	Eckel-Passow JE	2020-05-09	Neuro Oncol	Adult Diffuse Glioma GWAS by Molecular Subtype Identifies Variants in D2HGDH and FAM20C.	Adult diffuse triple positive glioma (IDH and TERT mutations, 1p19q codeletion)	189 European and unknown ancestry cases, 1,889 European and unknown ancestry controls	138 European and unknown ancestry cases, 808 European and unknown ancestry controls	8q24.21	CCDC26	rs72714270-?	NR	7E-10		6.164	NR z score decrease	Illumina [NR] (imputed)	N
1580	chr8	130515452	130515453	rs72714270	32386320	Eckel-Passow JE	2020-05-09	Neuro Oncol	Adult Diffuse Glioma GWAS by Molecular Subtype Identifies Variants in D2HGDH and FAM20C.	Adult diffuse glioma (IDH mutation, 1p/19q codeletion)	245 European and unknown ancestry cases, 1,889 European and unknown ancestry controls	145 European and unknown ancestry cases, 808 European and unknown ancestry controls	8q24.21	CCDC26	rs72714270-?	NR	1E-10		6.473	NR z score decrease	Illumina [NR] (imputed)	N
1580	chr8	130515452	130515453	rs72714270	32386320	Eckel-Passow JE	2020-05-09	Neuro Oncol	Adult Diffuse Glioma GWAS by Molecular Subtype Identifies Variants in D2HGDH and FAM20C.	Adult diffuse glioma (IDH mutation)	622 European and unknown ancestry cases, 1,889 European and unknown ancestry controls	390 European and unknown ancestry cases, 808 European and unknown ancestry controls	8q24.21	CCDC26	rs72714270-?	NR	9E-14		7.461	NR z score decrease	Illumina [NR] (imputed)	N
1580	chr8	130527772	130527773	rs9297790	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	8q24.21		rs9297790-T	0.107	2E-29				Affymetrix [10369434] (imputed)	N
1580	chr8	130527772	130527773	rs9297790	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	8q24.21		rs9297790-T	0.107	2E-16				Affymetrix [10369434] (imputed)	N
1580	chr8	130541446	130541447	rs7814625	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	8q24.21	CCDC26	rs7814625-A	0.363793	1E-16		0.019524142	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1580	chr8	130541446	130541447	rs7814625	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	8q24.21	CCDC26	rs7814625-A	0.363789	3E-10		0.015470472	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1581	chr8	130550636	130550637	rs6985031	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	8q24.21		rs6985031-?	NR	1E-23				NR [~ 8900000] (imputed)	N
1581	chr8	130555175	130555176	rs76588837	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	8q24.21		rs76588837-G	0.984	8E-9				Affymetrix [10369434] (imputed)	N
1581	chr8	130557031	130557032	rs75418630	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Neutrophil count	62,076 Japanese ancestry individuals	NA	8q24.21	CCDC26	rs75418630-?	NR	2E-17		0.07415	[0.057-0.091] unit decrease novel	Illumina [6108953] (imputed)	N
1581	chr8	130564039	130564040	rs12545590	34011352	Schwarm C	2021-05-19	Orphanet J Rare Dis	Identification of two novel bullous pemphigoid- associated alleles, HLA-DQA1*05:05 and -DRB1*07:01, in Germans.	Bullous pemphigoid	438 German cases, 417 German controls	NA	8q24.21	CCDC26	rs12545590-?	NR	5E-6		0.510692	[0.29-0.73] unit increase	Affymetrix [up to 386296] (imputed)	N
1581	chr8	130572109	130572110	rs10956483	21738478	Okada Y	2011-06-30	PLoS Genet	Identification of nine novel loci associated with white blood cell subtypes in a Japanese population.	White blood cell types	8,794 Japanese ancestry individuals	5,998 Japanese ancestry individuals	8q24.21	MLZE	rs10956483-C	0.44	2E-10	(monocyte count)	0.071	[0.05-0.09] unit increase	Illumina [2178645] (imputed)	N
1581	chr8	130572303	130572304	rs6987588	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8q24.21	FAM49B	rs6987588-?	NR	8E-6	(indole-3-propionate)	0.16503008	[0.093-0.238] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1581	chr8	130586570	130586571	rs11779859	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	8q24.21		rs11779859-G	0.973	9E-15				Affymetrix [10369434] (imputed)	N
1581	chr8	130586570	130586571	rs11779859	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	8q24.21		rs11779859-G	0.973	5E-15				Affymetrix [10369434] (imputed)	N
1581	chr8	130588044	130588045	rs72714302	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	8q24.21	NR	rs72714302-C	0.0487	8E-14				NR [9056863] (imputed)	N
1581	chr8	130589675	130589676	rs10094039	33385171	Hagg S	2020-12-31	Hum Genet	Deciphering the genetic and epidemiological landscape of mitochondrial DNA abundance.	Mitochondrial DNA levels	295,150 European ancestry individuals	NA	8q24.21	NR	rs10094039-A	0.3718	4E-11		0.0174845	[0.012-0.023] unit decrease	Affymetrix [3505788] (imputed)	N
1581	chr8	130595689	130595690	rs34635504	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	8q24.21		rs34635504-C	0.172361	6E-9		0.0280656	[0.019-0.037] unit decrease	Illumina [13476299] (imputed)	N
1581	chr8	130595689	130595690	rs34635504	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	8q24.21	CCDC26	rs34635504-C	0.075469	7E-10		0.026347734	[0.018-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
1581	chr8	130596458	130596459	rs10458304	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 18)	2,187 European ancestry individuals	NA	8q24.21	NR	rs10458304-C	0.1481	2E-6		0.2023	[0.12-0.28] unit decrease	Illumina [10677593] (imputed)	N
1581	chr8	130597362	130597362	rs10692222	31624269	Terao C	2019-10-17	Nat Commun	GWAS of mosaic loss of chromosome Y highlights genetic effects on blood cell differentiation.	Mosaic loss of chromosome Y (Y chromosome dosage)	95,380 Japanese men	NA	8q24.21	CCDC26	rs10692222-CATT	0.43	6E-9		0.025	NR unit increase	Illumina [9591901] (imputed)	N
1581	chr8	130597584	130597585	rs2163950	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	8q24.21		rs2163950-C	0.937	2E-27				Affymetrix [10369434] (imputed)	N
1581	chr8	130597584	130597585	rs2163950	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	8q24.21		rs2163950-C	0.937	1E-20				Affymetrix [10369434] (imputed)	N
1581	chr8	130597584	130597585	rs2163950	25096241	Keller MF	2014-08-05	Hum Mol Genet	Trans-ethnic meta-analysis of white blood cell phenotypes.	White blood cell count	16,843 Japanese ancestry individuals, 19,509 European ancestry individuals, 16,388 African American individuals	NA	8q24.21	intergenic	rs2163950-A	0.174	5E-9	(Japanese)	0.021	[0.013-0.029] unit decrease	Illumina [NR] (imputed)	N
1581	chr8	130597584	130597585	rs2163950	25096241	Keller MF	2014-08-05	Hum Mol Genet	Trans-ethnic meta-analysis of white blood cell phenotypes.	White blood cell count	16,843 Japanese ancestry individuals, 19,509 European ancestry individuals, 16,388 African American individuals	NA	8q24.21	intergenic	rs2163950-?	NR	2E-9		0.0167	[0.011-0.022] unit decrease	Illumina [NR] (imputed)	N
1581	chr8	130599246	130599247	rs7840212	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	8q24.21		rs7840212-T	NR	2E-56		0.0273	[0.024-0.031] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
1581	chr8	130599246	130599247	rs7840212	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	8q24.21		rs7840212-C	0.664	8E-22				Affymetrix [10369434] (imputed)	N
1581	chr8	130599246	130599247	rs7840212	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	8q24.21	CCDC26	rs7840212-T	0.336258	2E-12		0.021447917	[0.015-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1581	chr8	130599246	130599247	rs7840212	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	8q24.21	CCDC26	rs7840212-T	0.336232	4E-50		0.03602283	[0.031-0.041] unit decrease	Affymetrix [93095623] (imputed)	N
1581	chr8	130599246	130599247	rs7840212	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	86,890 East Asian ancestry individuals	NA	8q24.21	NR	rs7840212-C	0.4198	1E-16		0.040115	[0.031-0.05] SD units increase	Affymetrix, Illumina [16279099] (imputed)	N
1581	chr8	130599246	130599247	rs7840212	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q24.21	NR	rs7840212-T	0.378275	2E-92				Affymetrix, Illumina [19872809] (imputed)	N
1581	chr8	130599246	130599247	rs7840212	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	8q24.21	NR	rs7840212-T	0.336961	7E-81		0.040204	[0.036-0.044] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
1581	chr8	130599246	130599247	rs7840212	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	8q24.21		rs7840212-?	NR	1E-64				NR [~ 8900000] (imputed)	N
1581	chr8	130599246	130599247	rs7840212	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	8q24.21	CCDC26	rs7840212-T	0.3372	3E-31		0.04423928	[0.037-0.052] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1581	chr8	130599331	130599332	rs72716319	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	8q24.21	NR	rs72716319-G	0.0485	1E-9				NR [9056863] (imputed)	N
1581	chr8	130601088	130601089	rs1433578	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	154,355 East Asian ancestry individuals	NA	8q24.21		rs1433578-C	0.17453	6E-36		0.0558891	[0.047-0.065] unit decrease	Illumina [13479091] (imputed)	N
1581	chr8	130601088	130601089	rs1433578	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	151,807 East Asian ancestry individuals	NA	8q24.21	NR	rs1433578-T	0.827102	2E-34		0.059066	[0.05-0.069] SD units increase	Affymetrix, Illumina [16710636] (imputed)	N
1581	chr8	130601088	130601089	rs1433578	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	78,744 East Asian ancestry individuals	NA	8q24.21	NR	rs1433578-T	0.825875	1E-19		0.060572	[0.048-0.074] SD units increase	Affymetrix, Illumina [16289093] (imputed)	N
1581	chr8	130601088	130601089	rs1433578	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	White blood cell count	107,964 Japanese ancestry individuals	NA	8q24.21	CCDC26	rs1433578-?	NR	9E-25		0.05713	[0.046-0.068] unit decrease novel	Illumina [6108953] (imputed)	N
1581	chr8	130602280	130602281	rs10103048	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Resistin levels	21,758 European ancestry individuals	9,173 individuals	8q24.21		rs10103048-A	0.42	7E-12		0.0553	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1581	chr8	130602280	130602281	rs10103048	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Myeloperoxidase levels	21,758 European ancestry individuals	9,173 individuals	8q24.21		rs10103048-A	0.42	7E-19		0.072	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1581	chr8	130602927	130602928	rs77959102	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	8q24.21	CCDC26	rs77959102-C	0.143203	3E-20		0.03629442	[0.029-0.044] unit decrease	Affymetrix [93095623] (imputed)	N
1581	chr8	130602927	130602928	rs77959102	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	8q24.21	CCDC26	rs77959102-C	0.1417	1E-30		0.06083269	[0.05-0.071] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1581	chr8	130603356	130603357	rs2163951	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	8q24.21	CCDC26	rs2163951-C	0.847219	7E-16		0.028957179	[0.022-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
1581	chr8	130603634	130603635	rs10107630	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	8q24.21	CCDC26	rs10107630-T	0.573859	2E-42		0.0305537	[0.026-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
1581	chr8	130603634	130603635	rs10107630	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	8q24.21	CCDC26	rs10107630-T	0.5748	1E-9		0.02196291	[0.015-0.029] unit increase	Affymetrix [~ 2500000] (imputed)	N
1581	chr8	130603634	130603635	rs10107630	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	8q24.21	CCDC26	rs10107630-T	0.5747	4E-18		0.03108177	[0.024-0.038] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1581	chr8	130603634	130603635	rs10107630	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	8q24.21	CCDC26	rs10107630-T	0.5748	1E-12		0.02561114	[0.019-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1581	chr8	130604272	130604273	rs11327184	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	93,063 East Asian ancestry individuals	NA	8q24.21		rs11327184-A	0.607423	5E-13		0.0329209	[0.024-0.042] unit decrease	Illumina [13470073] (imputed)	N
1581	chr8	130604272	130604273	rs11327184	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	8q24.21	CCDC26	rs11327184-A	0.316737	8E-41		0.040178474	[0.034-0.046] unit decrease	Affymetrix [93095623] (imputed)	N
1581	chr8	130604272	130604273	rs11327184	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	8q24.21	CCDC26	rs11327184-A	0.3181	1E-25		0.04043806	[0.033-0.048] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1581	chr8	130604272	130604273	rs11327184	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	8q24.21	CCDC26	rs11327184-A	0.3182	9E-27		0.04131981	[0.034-0.049] unit increase	Affymetrix [~ 2500000] (imputed)	N
1581	chr8	130604272	130604273	rs11327184	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	8q24.21	CCDC26	rs11327184-A	0.3181	5E-34		0.04677997	[0.039-0.054] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1581	chr8	130604272	130604273	rs11327184	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	8q24.21	CCDC26	rs11327184-A	0.3181	9E-32		0.04520017	[0.038-0.053] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1581	chr8	130604562	130604563	rs13277237	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	95,119 East Asian ancestry individuals	NA	8q24.21		rs13277237-A	0.548433	9E-44		0.0609533	[0.052-0.07] unit decrease	Illumina [13471440] (imputed)	N
1581	chr8	130604562	130604563	rs13277237	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	8q24.21		rs13277237-G	0.432	4E-187				Affymetrix [10369434] (imputed)	N
1581	chr8	130604562	130604563	rs13277237	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	8q24.21		rs13277237-G	0.432	4E-183				Affymetrix [10369434] (imputed)	N
1581	chr8	130604562	130604563	rs13277237	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (monocyte)	21,347 Hispanic or Latin American individuals	NA	8q24.21		rs13277237-A	0.4568	1E-16		0.0939	[0.072-0.116] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1581	chr8	130604562	130604563	rs13277237	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	8q24.21	CCDC26	rs13277237-A	0.567933	7E-30		0.025471704	[0.021-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
1581	chr8	130604562	130604563	rs13277237	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	88,929 East Asian ancestry individuals	NA	8q24.21	NR	rs13277237-G	0.452834	4E-51		0.071644	[0.062-0.081] SD units increase	Affymetrix, Illumina [16289044] (imputed)	N
1581	chr8	130604562	130604563	rs13277237	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q24.21	NR	rs13277237-A	0.56249	5E-56				Affymetrix, Illumina [24246363] (imputed)	N
1581	chr8	130604562	130604563	rs13277237	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	8q24.21	NR	rs13277237-A	0.56724	6E-57		0.029313	[0.026-0.033] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1581	chr8	130604562	130604563	rs13277237	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	8q24.21	NR	rs13277237-A	0.567858	2E-38		0.02539	[0.022-0.029] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
1581	chr8	130604562	130604563	rs13277237	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	8q24.21		rs13277237-?	NR	3E-31				NR [~ 8900000] (imputed)	N
1581	chr8	130604562	130604563	rs13277237	28158719	Jain D	2017-02-01	Hum Mol Genet	Genome-wide association of white blood cell counts in Hispanic/Latino Americans: the Hispanic Community Health Study/Study of Latinos.	White blood cell count (monocyte)	up to 11,809 Hispanic/Latino American individuals	up to 7,200 Hispanic/Latino American individuals	8q24.21	CCDC28, GSDMC	rs13277237-G	0.459	6E-12		0.0099	[0.0072-0.0126] unit increase	Illumina [27887661] (imputed)	N
1581	chr8	130604562	130604563	rs13277237	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	8q24.21	NR	rs13277237-G	0.435	1E-7	(EA)	1.0555866	[1.04-1.08]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1581	chr8	130605870	130605871	rs55964818	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	8q24.21		rs55964818-T	0.431	5E-37				Affymetrix [10369434] (imputed)	N
1581	chr8	130605870	130605871	rs55964818	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	7,043 South Asian ancestry individuals	NA	8q24.21	NR	rs55964818-T	0.346576	3E-9		0.100534	[0.067-0.134] SD units increase	Affymetrix, Illumina [28465834] (imputed)	N
1581	chr8	130605870	130605871	rs55964818	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	8q24.21		rs55964818-?	NR	3E-55				NR [~ 8900000] (imputed)	N
1581	chr8	130605930	130605931	rs12544501	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	13,471 African American or Afro-Caribbean and African ancestry individuals	NA	8q24.21	NR	rs12544501-T	0.523396	3E-9		0.075337	[0.05-0.1] SD units increase	Affymetrix, Illumina [36452625] (imputed)	N
1581	chr8	130606475	130606476	rs1865223	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	8q24.21		rs1865223-T	NR	2E-58		0.0345	[0.03-0.039] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
1581	chr8	130606475	130606476	rs1865223	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	8q24.21	CCDC26	rs1865223-T	0.567999	3E-72		0.040569942	[0.036-0.045] unit increase	Affymetrix [93095623] (imputed)	N
1581	chr8	130606931	130606932	rs72716328	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (min-P)	26,502 European ancestry individuals	NA	8q24.21	NR	rs72716328-?		4E-8				NR [7428630] (imputed)	N
1581	chr8	130606931	130606932	rs72716328	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	8q24.21	NR	rs72716328-?		7E-10				NR [7428630] (imputed)	N
1581	chr8	130607774	130607775	rs16904123	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	8q24.21	CCDC26	rs16904123-T	0.1881	9E-13		0.03272001	[0.024-0.042] unit increase	Affymetrix [~ 2500000] (imputed)	N
1581	chr8	130607774	130607775	rs16904123	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	8q24.21	CCDC26	rs16904123-T	0.188	3E-29		0.05161339	[0.043-0.061] unit increase	Affymetrix [~ 2500000] (imputed)	N
1581	chr8	130609067	130609068	rs28500514	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	8q24.21	CCDC26	rs28500514-C	0.5692	7E-118		0.08335604	[0.076-0.09] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1581	chr8	130609067	130609068	rs28500514	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	8q24.21	CCDC26	rs28500514-C	0.5691	2E-63		0.06092761	[0.054-0.068] unit increase	Affymetrix [~ 2500000] (imputed)	N
1581	chr8	130609367	130609368	rs4407843	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	8q24.21		rs4407843-A	0.431	1E-27				Affymetrix [10369434] (imputed)	N
1581	chr8	130610388	130610389	rs2163952	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	8q24.21	CCDC26	rs2163952-C	0.431482	6E-475		0.13053608	[0.13-0.14] unit decrease	Affymetrix [93095623] (imputed)	N
1581	chr8	130610738	130610739	rs2395905	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	8q24.21		rs2395905-C	NR	4E-26		0.0183	[0.015-0.022] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
1581	chr8	130610792	130610793	rs2395906	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q24.21	NR	rs2395906-A	0.563251	3E-702				Affymetrix, Illumina [23467995] (imputed)	N
1581	chr8	130610792	130610793	rs2395906	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q24.21	NR	rs2395906-A	0.562943	2E-38				Affymetrix, Illumina [20825802] (imputed)	N
1581	chr8	130610792	130610793	rs2395906	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	8q24.21		rs2395906-?	NR	4E-34				NR [~ 8900000] (imputed)	N
1581	chr8	130611761	130611761	rs397731840	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	8q24.21	CCDC26	rs397731840-CT	0.5942	2E-29		0.04348849	[0.036-0.051] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1581	chr8	130611761	130611761	rs397731840	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	8q24.21	CCDC26	rs397731840-CT	0.5942	9E-27		0.04130679	[0.034-0.049] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1581	chr8	130611761	130611761	rs397731840	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	8q24.21	CCDC26	rs397731840-CT	0.5942	5E-28		0.04233704	[0.035-0.05] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1581	chr8	130611761	130611761	rs397731840	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	8q24.21	CCDC26	rs397731840-CT	0.5942	2E-28		0.04264974	[0.035-0.05] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1581	chr8	130611761	130611761	rs397731840	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	8q24.21	CCDC26	rs397731840-CT	0.5942	3E-26		0.0409617	[0.033-0.049] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1581	chr8	130613613	130613614	rs10098310	21738480	Nalls MA	2011-07-01	PLoS Genet	Multiple loci are associated with white blood cell phenotypes.	White blood cell count	19,509 European ancestry individuals	11,823 European ancestry individuals	8q24.21	MLZE, FAM49B	rs10098310-A		3E-20	(Monocytes)	0.0338	[0.027-0.041] unit decrease	Affymetrix, Illumina [> 2400000] (imputed)	N
1581	chr8	130614898	130614899	rs1583333	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	8q24.21	NR	rs1583333-?	NR	7E-9				Affymetrix [NR]	N
1581	chr8	130615851	130615852	rs6989110	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q24.21	NR	rs6989110-C	0.567666	1E-44				Affymetrix, Illumina [24332387] (imputed)	N
1581	chr8	130618079	130618080	rs62525616	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	8q24.21	CCDC26	rs62525616-T	0.57106	1E-31		0.026726922	[0.022-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
1581	chr8	130618149	130618150	rs59697075	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	8q24.21		rs59697075-T	NR	2E-61		0.033	[0.029-0.037] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1581	chr8	130618149	130618150	rs59697075	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	8q24.21	CCDC26	rs59697075-T	0.587512	2E-30		0.030541465	[0.025-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
1581	chr8	130618149	130618150	rs59697075	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	8q24.21	CCDC26	rs59697075-T	0.587508	2E-57		0.03706824	[0.033-0.042] unit decrease	Affymetrix [93095623] (imputed)	N
1581	chr8	130618149	130618150	rs59697075	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q24.21	NR	rs59697075-T	0.578197	5E-101				Affymetrix, Illumina [24649327] (imputed)	N
1581	chr8	130618149	130618150	rs59697075	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	8q24.21	NR	rs59697075-T	0.586595	2E-85		0.038736	[0.035-0.043] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1581	chr8	130618149	130618150	rs59697075	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q24.21	NR	rs59697075-T	0.582725	2E-93				Affymetrix, Illumina [23114412] (imputed)	N
1581	chr8	130618149	130618150	rs59697075	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	8q24.21	NR	rs59697075-T	0.586811	6E-80		0.038247	[0.034-0.042] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
1581	chr8	130618149	130618150	rs59697075	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	8q24.21	CCDC26	rs59697075-T	0.5867	5E-39		0.04796049	[0.041-0.055] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1581	chr8	130618149	130618150	rs59697075	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	8q24.21	CCDC26	rs59697075-T	0.5868	3E-30		0.04155139	[0.034-0.049] unit increase	Affymetrix [~ 2500000] (imputed)	N
1581	chr8	130620037	130620038	rs13276692	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	8q24.21	CCDC26	rs13276692-T	0.843003	1E-12		0.025663992	[0.019-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
1581	chr8	130620118	130620119	rs13276769	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	8q24.21	CCDC26	rs13276769-A	0.56984	3E-182		0.07564647	[0.07-0.081] unit decrease	Affymetrix [93095623] (imputed)	N
1581	chr8	130621253	130621254	rs35389394	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	8q24.21		rs35389394-T	NR	3E-377		0.0864	[0.082-0.091] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
1581	chr8	130621253	130621254	rs35389394	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	8q24.21		rs35389394-T	NR	3E-33		0.0242	[0.02-0.028] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
1581	chr8	130621253	130621254	rs35389394	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	8q24.21		rs35389394-T	NR	2E-25		0.021	[0.017-0.025] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
1581	chr8	130621253	130621254	rs35389394	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Monocyte count	62,076 Japanese ancestry individuals	NA	8q24.21	CCDC26	rs35389394-?	NR	8E-41		0.07734	[0.066-0.089] unit decrease novel	Illumina [6108953] (imputed)	N
1581	chr8	130622401	130622401	rs377343294	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	8q24.21	CCDC26	rs377343294-CAT	0.18658	8E-26		0.030567156	[0.025-0.036] unit increase	Affymetrix [93095623] (imputed)	N
1581	chr8	130624104	130624105	rs1991866	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	8q24.21		rs1991866-G	0.424	2E-28		0.12	[0.1-0.15] % increase	Affymetrix [NR] (imputed)	N
1581	chr8	130624104	130624105	rs1991866	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	8q24.21	CCDC26	rs1991866-C	0.577027	1E-30		0.025953118	[0.022-0.03] unit increase	Affymetrix [93095623] (imputed)	N
1581	chr8	130624104	130624105	rs1991866	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	8q24.21	CCDC26	rs1991866-C	0.577016	3E-45		0.03187197	[0.027-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
1581	chr8	130624104	130624105	rs1991866	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	8q24.21	NR	rs1991866-C	0.575642	3E-40		0.025112	[0.021-0.029] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
1581	chr8	130624104	130624105	rs1991866	28193307	Lin BD	2017-02-14	Twin Res Hum Genet	Heritability and GWAS Studies for Monocyte-Lymphocyte Ratio.	Monocyte-lymphocyte ratio	5,892 Dutch ancestry individuals	NA	8q24.21	intergenic	rs1991866-?	NR	2E-6				Affymetrix, Illumina, Perlegen [5987253] (imputed)	N
1581	chr8	130624104	130624105	rs1991866	28158719	Jain D	2017-02-01	Hum Mol Genet	Genome-wide association of white blood cell counts in Hispanic/Latino Americans: the Hispanic Community Health Study/Study of Latinos.	White blood cell count (monocyte)	up to 11,809 Hispanic/Latino American individuals	up to 7,200 Hispanic/Latino American individuals	8q24.21	NR	rs1991866-C	0.41	8E-10		0.028	[0.020-0.036] unit decrease	Illumina [27887661] (imputed)	N
1581	chr8	130624104	130624105	rs1991866	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Ulcerative colitis	12,366 European and unknown ancestry cases, 33,609 European and unknown ancestry controls	NA	8q24.21	intergenic	rs1991866-?		2E-6				Illumina [9578670] (imputed)	N
1581	chr8	130624104	130624105	rs1991866	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	8q24.21	Intergenic	rs1991866-?		1E-6				Illumina [9725440] (imputed)	N
1581	chr8	130624104	130624105	rs1991866	25096241	Keller MF	2014-08-05	Hum Mol Genet	Trans-ethnic meta-analysis of white blood cell phenotypes.	Monocyte count	9,810 Japanese ancestry individuals, 16,550 European ancestry individuals, 7,369 African American individuals	NA	8q24.21	intergenic	rs1991866-C	0.598	7E-8	(Japanese)	0.034	[0.022-0.046] unit decrease	Illumina [NR] (imputed)	N
1581	chr8	130624104	130624105	rs1991866	25096241	Keller MF	2014-08-05	Hum Mol Genet	Trans-ethnic meta-analysis of white blood cell phenotypes.	Monocyte count	9,810 Japanese ancestry individuals, 16,550 European ancestry individuals, 7,369 African American individuals	NA	8q24.21	intergenic	rs1991866-C	0.451	5E-11	(EA)	0.032	[0.022-0.042] unit decrease	Illumina [NR] (imputed)	N
1581	chr8	130624104	130624105	rs1991866	25096241	Keller MF	2014-08-05	Hum Mol Genet	Trans-ethnic meta-analysis of white blood cell phenotypes.	Monocyte count	9,810 Japanese ancestry individuals, 16,550 European ancestry individuals, 7,369 African American individuals	NA	8q24.21	NR	rs1991866-?	NR	1E-10		0.0156	[0.011-0.020] unit decrease	Illumina [NR] (imputed)	N
1581	chr8	130624104	130624105	rs1991866	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	8q24.21	intergenic	rs1991866-G	0.422	2E-9		1.054	[1.024-1.084]	Affymetrix, Illumina [1230000] (imputed)	N
1581	chr8	130624660	130624661	rs10092988	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	8q24.21	NR	rs10092988-A	0.509509	8E-385		0.079112	[0.075-0.083] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1581	chr8	130624815	130624816	rs1982094	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	8q24.21		rs1982094-C	0.96	9E-14				Affymetrix [10369434] (imputed)	N
1581	chr8	130624815	130624816	rs1982094	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	8q24.21	CCDC26	rs1982094-T	0.040451	3E-21		0.05470772	[0.043-0.066] unit decrease	Affymetrix [93095623] (imputed)	N
1581	chr8	130624815	130624816	rs1982094	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	8q24.21	CCDC26	rs1982094-T	0.0424	8E-15		0.07033336	[0.053-0.088] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1581	chr8	130624815	130624816	rs1982094	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	8q24.21	CCDC26	rs1982094-T	0.0424	3E-16		0.07404138	[0.056-0.092] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1581	chr8	130624815	130624816	rs1982094	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	8q24.21	CCDC26	rs1982094-T	0.0424	4E-15		0.07116706	[0.053-0.089] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1581	chr8	130624815	130624816	rs1982094	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	8q24.21	CCDC26	rs1982094-T	0.0424	3E-15		0.07124163	[0.054-0.089] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1581	chr8	130624815	130624816	rs1982094	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	8q24.21	CCDC26	rs1982094-T	0.0424	4E-16		0.07377733	[0.056-0.092] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1581	chr8	130626163	130626164	rs10100356	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	91,908 East Asian ancestry individuals	NA	8q24.21		rs10100356-A	0.456289	1E-11		0.0309749	[0.022-0.04] unit increase	Illumina [13469940] (imputed)	N
1581	chr8	130626163	130626164	rs10100356	33594131	Donati G	2021-02-16	Sci Rep	Evidence for specificity of polygenic contributions to attainment in English, maths and science during adolescence.	Academic attainment (science)	6,089 European ancestry adolescents	NA	8q24.21	NR	rs10100356-G	NR	5E-6		0.099	[0.056-0.142] unit decrease	Illumina [6319684] (imputed)	N
1581	chr8	130626163	130626164	rs10100356	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	White blood cell count (basophil)	62,076 Japanese ancestry individuals	NA	8q24.21	CCDC26	rs10100356-?	NR	5E-9		0.03437	[0.023-0.046] unit increase novel	Illumina [6108953] (imputed)	N
1581	chr8	130626163	130626164	rs10100356	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of white cells	171,996 European ancestry individuals	NA	8q24.21	CCDC26	rs10100356-A	0.2277	6E-13		0.03016674	[0.022-0.038] unit increase	Affymetrix [~ 2500000] (imputed)	N
1581	chr8	130626163	130626164	rs10100356	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of granulocytes	170,223 European ancestry individuals	NA	8q24.21	CCDC26	rs10100356-A	0.2277	1E-14		0.03262088	[0.024-0.041] unit increase	Affymetrix [~ 2500000] (imputed)	N
1581	chr8	130626827	130626828	rs77527100	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	8q24.21	CCDC26	rs77527100-G	0.0526	4E-20		0.07408167	[0.058-0.09] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1581	chr8	130628605	130628606	rs16904127	29109912	Rawofi L	2017-11-02	PeerJ	Genome-wide association study of pigmentary traits (skin and iris color) in individuals of East Asian ancestry.	Iris heterochromicity	377 East Asian ancestry individuals	NA	8q24.21	CCDC26	rs16904127-A	0.469006	7E-6		0.359	[0.2-0.51] unit decrease	Illumina [at least 520076] (imputed)	N
1581	chr8	130632790	130632791	rs17180618	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	334,468 European ancestry, NR ancestry individuals	NA	8q24.21		rs17180618-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1581	chr8	130637900	130637901	rs34092021	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	82,810 East Asian ancestry individuals	NA	8q24.21		rs34092021-A	0.23089	4E-21		0.0521555	[0.041-0.063] unit decrease	Illumina [13467171] (imputed)	N
1581	chr8	130639803	130639804	rs7012787	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	8q24.21	CCDC26	rs7012787-A	0.0531	3E-23		0.07978292	[0.064-0.096] unit increase	Affymetrix [~ 2500000] (imputed)	N
1581	chr8	130641321	130641322	rs146950370	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	8q24.21	CCDC26	rs146950370-T	0.00641700000000001	7E-57		0.23081471	[0.2-0.26] unit increase	Affymetrix [93095623] (imputed)	N
1581	chr8	130641321	130641322	rs146950370	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	8q24.21	CCDC26	rs146950370-T	0.00641099999999995	8E-56		0.22834392	[0.2-0.26] unit increase	Affymetrix [93095623] (imputed)	N
1581	chr8	130643867	130643868	rs10101342	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q24.21	NR	rs10101342-A	0.201369	7E-22				Affymetrix, Illumina [24588908] (imputed)	N
1581	chr8	130645691	130645692	rs55705857	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	8q24.21		rs55705857-G	0.06	2E-49		14.78	z score increase	Affymetrix [9061022] (imputed)	N
1581	chr8	130645691	130645692	rs55705857	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	8q24.21		rs55705857-G	0.06	2E-15		7.94	z score increase	Affymetrix [9061022] (imputed)	N
1581	chr8	130645691	130645692	rs55705857	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	8q24.21		rs55705857-G	0.06	7E-15		7.79	z score increase	Affymetrix [9061022] (imputed)	N
1581	chr8	130645691	130645692	rs55705857	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	334,468 European ancestry, NR ancestry individuals	NA	8q24.21		rs55705857-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1581	chr8	130645691	130645692	rs55705857	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	8q24.21		rs55705857-A	0.942	1E-22				Affymetrix [10369434] (imputed)	N
1581	chr8	130645691	130645692	rs55705857	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	8q24.21	DNAJC13, ACAD11, NPHP3, ACKR4, UBA5	rs55705857-?		6E-12				NR [7428630] (imputed)	N
1581	chr8	130645691	130645692	rs55705857	32386320	Eckel-Passow JE	2020-05-09	Neuro Oncol	Adult Diffuse Glioma GWAS by Molecular Subtype Identifies Variants in D2HGDH and FAM20C.	Adult diffuse triple positive glioma (IDH and TERT mutations, 1p19q codeletion)	189 European and unknown ancestry cases, 1,889 European and unknown ancestry controls	138 European and unknown ancestry cases, 808 European and unknown ancestry controls	8q24.21	CCDC26	rs55705857-?	NR	3E-23		9.951	NR z score increase	Illumina [NR] (imputed)	N
1581	chr8	130645691	130645692	rs55705857	32386320	Eckel-Passow JE	2020-05-09	Neuro Oncol	Adult Diffuse Glioma GWAS by Molecular Subtype Identifies Variants in D2HGDH and FAM20C.	Adult diffuse glioma (IDH mutation, 1p/19q non-codeleted)	316 European and unknown ancestry cases, 1,889 European and unknown ancestry controls	245 European and unknown ancestry cases, 808 European and unknown ancestry controls	8q24.21	CCDC26	rs55705857-?	NR	2E-16		8.226	NR z score increase	Illumina [NR] (imputed)	N
1581	chr8	130645691	130645692	rs55705857	32386320	Eckel-Passow JE	2020-05-09	Neuro Oncol	Adult Diffuse Glioma GWAS by Molecular Subtype Identifies Variants in D2HGDH and FAM20C.	Adult diffuse glioma (IDH mutation, 1p/19q codeletion)	245 European and unknown ancestry cases, 1,889 European and unknown ancestry controls	145 European and unknown ancestry cases, 808 European and unknown ancestry controls	8q24.21	CCDC26	rs55705857-?	NR	8E-26		10.508	NR z score increase	Illumina [NR] (imputed)	N
1581	chr8	130645691	130645692	rs55705857	32386320	Eckel-Passow JE	2020-05-09	Neuro Oncol	Adult Diffuse Glioma GWAS by Molecular Subtype Identifies Variants in D2HGDH and FAM20C.	Adult diffuse glioma (IDH mutation)	622 European and unknown ancestry cases, 1,889 European and unknown ancestry controls	390 European and unknown ancestry cases, 808 European and unknown ancestry controls	8q24.21	CCDC26	rs55705857-?	NR	2E-29		11.274	NR z score increase	Illumina [NR] (imputed)	N
1581	chr8	130645691	130645692	rs55705857	32386320	Eckel-Passow JE	2020-05-09	Neuro Oncol	Adult Diffuse Glioma GWAS by Molecular Subtype Identifies Variants in D2HGDH and FAM20C.	Adult diffuse glioma (IDH mutation only)	241 European and unknown ancestry cases, 1,889 European and unknown ancestry controls	214 European and unknown ancestry cases, 808 European and unknown ancestry controls	8q24.21	CCDC26	rs55705857-?	NR	1E-12		7.123	NR z score increase	Illumina [NR] (imputed)	N
1581	chr8	130645691	130645692	rs55705857	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	8q24.21	NR	rs55705857-?		3E-9	(Uncinate fasciculus)			NR [8955960] (imputed)	N
1581	chr8	130645691	130645692	rs55705857	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	8q24.21	NR	rs55705857-?		3E-9	(Sagittal stratum)			NR [8955960] (imputed)	N
1581	chr8	130645691	130645692	rs55705857	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	8q24.21	NR	rs55705857-?		2E-8	(Sagittal stratum)			NR [8955960] (imputed)	N
1581	chr8	130645691	130645692	rs55705857	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	8q24.21	NR	rs55705857-?		4E-9	(Sagittal stratum)			NR [8955960] (imputed)	N
1581	chr8	130645691	130645692	rs55705857	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	8q24.21	NR	rs55705857-?		4E-9	(Anterior corona radiata)			NR [8955960] (imputed)	N
1581	chr8	130645691	130645692	rs55705857	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	8q24.21	NR	rs55705857-?		3E-8	(Retrolenticular part of internal capsule)			NR [8955960] (imputed)	N
1581	chr8	130645691	130645692	rs55705857	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	8q24.21	NR	rs55705857-?		2E-8	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
1581	chr8	130645691	130645692	rs55705857	30152087	Ostrom QT	2018-08-27	Int J Cancer	Age-specific genome-wide association study in glioblastoma identifies increased proportion of 'lower grade glioma'-like features associated with younger age.	Glioblastoma (age-stratified)	1,533 cases diagnosed below median age, 1,476 cases diagnosed at median age, 1,503 cases diagnosed above median age, 10,582 controls,	NA	8q24.21	CCDC26	rs55705857-G	NR	9E-11	(Below median age-at-diagnosis)	1.76	[1.49-2.10]	NR [NR] (imputed)	N
1581	chr8	130645691	130645692	rs55705857	29743610	Ostrom QT	2018-05-09	Sci Rep	Sex-specific glioma genome-wide association study identifies new risk locus at 3p21.31 in females, and finds sex-differences in risk at 8q24.21.	Non-glioblastoma glioma	1,716 European ancestry male cases, 1,320 European ancestry female cases, 5,216 European ancestry male controls, 5,470 European ancestry female controls	NA	8q24.21	MYC	rs55705857-G	NR	8E-36	(males)	2.66	[2.28-3.10]	Affymetrix, Illumina [NR] (imputed)	N
1581	chr8	130645691	130645692	rs55705857	29743610	Ostrom QT	2018-05-09	Sci Rep	Sex-specific glioma genome-wide association study identifies new risk locus at 3p21.31 in females, and finds sex-differences in risk at 8q24.21.	Non-glioblastoma glioma	1,716 European ancestry male cases, 1,320 European ancestry female cases, 5,216 European ancestry male controls, 5,470 European ancestry female controls	NA	8q24.21	MYC	rs55705857-G	NR	2E-65	(females)	4.71	[3.94-5.63]	Affymetrix, Illumina [NR] (imputed)	N
1581	chr8	130645691	130645692	rs55705857	29743610	Ostrom QT	2018-05-09	Sci Rep	Sex-specific glioma genome-wide association study identifies new risk locus at 3p21.31 in females, and finds sex-differences in risk at 8q24.21.	Glioma	4,831 European ancestry male cases, 3,206 European ancestry female cases, 5,216 European ancestry male controls, 5,470 European ancestry female controls	NA	8q24.21	MYC	rs55705857-G	NR	1E-39	(females)	2.45	[2.14-2.80]	Affymetrix, Illumina [NR] (imputed)	N
1581	chr8	130645691	130645692	rs55705857	29743610	Ostrom QT	2018-05-09	Sci Rep	Sex-specific glioma genome-wide association study identifies new risk locus at 3p21.31 in females, and finds sex-differences in risk at 8q24.21.	Glioma	4,831 European ancestry male cases, 3,206 European ancestry female cases, 5,216 European ancestry male controls, 5,470 European ancestry female controls	NA	8q24.21	MYC	rs55705857-G	NR	1E-14	(males)	1.56	[1.40-1.75]	Affymetrix, Illumina [NR] (imputed)	N
1581	chr8	130645691	130645692	rs55705857	29743610	Ostrom QT	2018-05-09	Sci Rep	Sex-specific glioma genome-wide association study identifies new risk locus at 3p21.31 in females, and finds sex-differences in risk at 8q24.21.	Glioblastoma	2,835 European ancestry male cases, 1,682 European ancestry female cases, 5,216 European ancestry male controls, 5,470 European ancestry female controls	NA	8q24.21	MYC	rs55705857-G	NR	4E-7	(females)	1.61	[1.34-1.94]	Affymetrix, Illumina [NR] (imputed)	N
1581	chr8	130645691	130645692	rs55705857	28346443	Melin BS	2017-03-27	Nat Genet	Genome-wide association study of glioma subtypes identifies specific differences in genetic susceptibility to glioblastoma and non-glioblastoma tumors.	Non-glioblastoma glioma	5,819 European ancestry cases, 18,190 European ancestry controls.	NA	8q24.21	CCDC26	rs55705857-G	0.057	7E-149		3.39	3.09-3.71	Illumina [at least 6769856] (imputed)	N
1581	chr8	130645691	130645692	rs55705857	28346443	Melin BS	2017-03-27	Nat Genet	Genome-wide association study of glioma subtypes identifies specific differences in genetic susceptibility to glioblastoma and non-glioblastoma tumors.	Glioma	12,469 European ancestry cases, 18,190 European ancestry controls.	NA	8q24.21	CCDC26	rs55705857-G	0.057	1E-78		1.99	1.85-2.13	Illumina [at least 6887412] (imputed)	N
1581	chr8	130645691	130645692	rs55705857	28346443	Melin BS	2017-03-27	Nat Genet	Genome-wide association study of glioma subtypes identifies specific differences in genetic susceptibility to glioblastoma and non-glioblastoma tumors.	Glioblastoma	6,191 European ancestry cases, 18,190 European ancestry controls.	NA	8q24.21	CCDC26	rs55705857-G	0.057	9E-7		1.27	1.16-1.40	Illumina [at least 6790270] (imputed)	N
1581	chr8	130645691	130645692	rs55705857	26424050	Kinnersley B	2015-10-01	Nat Commun	Genome-wide association study identifies multiple susceptibility loci for glioma.	Non-glioblastoma glioma	2,364 Northern European ancestry cases, 7,435 Northern European ancestry controls	up to 1,490 European ancestry cases, up to 1,723 European ancestry controls	8q24.21	NR	rs55705857-G	NR	1E-62		3.6	[3.10-4.19]	Illumina [at least 8427548] (imputed)	N
1581	chr8	130645691	130645692	rs55705857	26424050	Kinnersley B	2015-10-01	Nat Commun	Genome-wide association study identifies multiple susceptibility loci for glioma.	Glioma	1,783 Northern European ancestry glioblastoma cases,  2,364 Northern European ancestry non-glioblastoma cases, 7,435 Northern European ancestry controls	1,490 European ancestry cases, 1,723 European ancestry control	8q24.21	NR	rs55705857-G	NR	6E-37		2.19	[1.94-2.47]	Illumina [at least 8427548] (imputed)	N
1581	chr8	130651645	130651646	rs4562281	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Eosinophil counts	62,076 Japanese ancestry individuals	NA	8q24.21	CCDC26	rs4562281-?	NR	4E-10		0.03808	[0.026-0.05] unit increase novel	Illumina [6108953] (imputed)	N
1581	chr8	130659169	130659170	rs62523770	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	8q24.21	CCDC26	rs62523770-T	0.191132	4E-11		0.019733258	[0.014-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1581	chr8	130659169	130659170	rs62523770	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	8q24.21	NR	rs62523770-T	0.190694	3E-24		0.023742	[0.019-0.028] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1581	chr8	130673599	130673600	rs6991966	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	8q24.21	NR	rs6991966-T	0.289029	9E-11		0.014633	[0.01-0.019] SD unit decrease	Affymetrix, Illumina [50036608] (imputed)	N
1581	chr8	130676039	130676040	rs4487717	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	8q24.21	CCDC26	rs4487717-T	0.314199	4E-11		0.01726079	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1581	chr8	130676039	130676040	rs4487717	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	81,042 East Asian ancestry individuals	NA	8q24.21	NR	rs4487717-C	0.657507	6E-11		0.03502	[0.025-0.046] SD units increase	Affymetrix, Illumina [16286709] (imputed)	N
1581	chr8	130676638	130676639	rs9918807	23393555	Jensen RA	2013-02-05	PLoS One	Genome-wide association study of retinopathy in individuals without diabetes.	Retinopathy in non-diabetics	19,411 European ancestry individuals	NA	8q24.21	MLZE	rs9918807-T	0.94	5E-6		0.47	[0.27-0.67] unit decrease	Illumina [2675979] (imputed)	N
1581	chr8	130678705	130678706	rs138628047	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	8q24.21	CCDC26	rs138628047-C	0.0078	2E-16		0.1765455	[0.13-0.22] unit increase	Affymetrix [~ 2500000] (imputed)	N
1581	chr8	130678705	130678706	rs138628047	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	8q24.21	CCDC26	rs138628047-C	0.0078	2E-11		0.1454868	[0.1-0.19] unit increase	Affymetrix [~ 2500000] (imputed)	N
1581	chr8	130678705	130678706	rs138628047	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	8q24.21	CCDC26	rs138628047-C	0.0078	6E-16		0.1746701	[0.13-0.22] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1582	chr8	130680776	130680777	rs4733720	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q24.21	NR	rs4733720-A	0.303115	4E-18				Affymetrix, Illumina [19905671] (imputed)	N
1582	chr8	130681007	130681008	rs7017051	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	8q24.21	CCDC26	rs7017051-A	0.465724	9E-14		0.016913142	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1582	chr8	130683924	130683927	rs10570589	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	8q24.21		rs10570589-G	NR	9E-12		0.0132	[0.0095-0.0169] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1582	chr8	130685456	130685457	rs4295627	21531791	Sanson M	2011-04-29	Hum Mol Genet	Chromosome 7p11.2 (EGFR) variation influences glioma risk.	Glioma	4,147 European ancestry cases, 7,435 European ancestry controls	NA	8q24.21	CCDC26	rs4295627-?	NR	5E-21		1.4	[NR]	Illumina [424460]	N
1582	chr8	130685456	130685457	rs4295627	19578367	Shete S	2009-07-05	Nat Genet	Genome-wide association study identifies five susceptibility loci for glioma.	Glioma	1,878 European ancestry cases, 3,670 European ancestry controls	2,545 European ancestry cases, 2,953 European ancestry controls	8q24.21	CCDC26	rs4295627-G	0.83	2E-18		1.36	[1.29-1.43]	Illumina [454576]	N
1582	chr8	130690726	130690729	rs71302381	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	8q24.21	CCDC26	rs71302381-A	0.168339	3E-28		0.03440473	[0.028-0.041] unit decrease	Affymetrix [93095623] (imputed)	N
1582	chr8	130690726	130690729	rs71302381	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	8q24.21	CCDC26	rs71302381-A	0.168322	3E-12		0.021795273	[0.016-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1582	chr8	130690726	130690729	rs71302381	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	8q24.21	CCDC26	rs71302381-A	0.1738	1E-9		0.03034668	[0.021-0.04] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1582	chr8	130694767	130694773	rs34920939	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	8q24.21	RP11-419K12.1	rs34920939-T	0.401099	4E-11		0.017180832	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1582	chr8	130694767	130694773	rs34920939	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	8q24.21	RP11-419K12.1	rs34920939-T	0.4049	3E-16		0.0316479	[0.024-0.039] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1582	chr8	130696136	130696137	rs6993442	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	8q24.21	RP11-419K12.1, CCDC26	rs6993442-C	0.166432	1E-24		0.03469737	[0.028-0.041] unit increase	Affymetrix [93095623] (imputed)	N
1582	chr8	130696136	130696137	rs6993442	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	8q24.21	RP11-419K12.1, CCDC26	rs6993442-C	0.166409	6E-27		0.035571743	[0.029-0.042] unit increase	Affymetrix [93095623] (imputed)	N
1582	chr8	130696136	130696137	rs6993442	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	8q24.21	RP11-419K12.1, CCDC26	rs6993442-C	0.166432	2E-30		0.037913132	[0.031-0.044] unit increase	Affymetrix [93095623] (imputed)	N
1582	chr8	130696136	130696137	rs6993442	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	8q24.21	RP11-419K12.1, CCDC26	rs6993442-C	0.166418	1E-13		0.024617368	[0.018-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
1582	chr8	130696136	130696137	rs6993442	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	8q24.21		rs6993442-?	NR	3E-31				NR [~ 8900000] (imputed)	N
1582	chr8	130696136	130696137	rs6993442	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	8q24.21	RP11-419K12.1, CCDC26	rs6993442-C	0.1813	1E-12		0.03829694	[0.028-0.049] unit increase	Affymetrix [~ 2500000] (imputed)	N
1582	chr8	130696136	130696137	rs6993442	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	8q24.21	RP11-419K12.1, CCDC26	rs6993442-C	0.1813	2E-13		0.03995507	[0.029-0.051] unit increase	Affymetrix [~ 2500000] (imputed)	N
1582	chr8	130696136	130696137	rs6993442	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	8q24.21	RP11-419K12.1, CCDC26	rs6993442-C	0.1811	2E-12		0.03781716	[0.027-0.048] unit increase	Affymetrix [~ 2500000] (imputed)	N
1582	chr8	130696144	130696145	rs74865311	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	8q24.21	RP11-419K12.1, CCDC26	rs74865311-G	0.036344	6E-13		0.04338047	[0.032-0.055] unit decrease	Affymetrix [93095623] (imputed)	N
1582	chr8	130696144	130696145	rs74865311	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	8q24.21	RP11-419K12.1, CCDC26	rs74865311-G	0.036364	2E-30		0.069499224	[0.058-0.081] unit decrease	Affymetrix [93095623] (imputed)	N
1582	chr8	130696144	130696145	rs74865311	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	8q24.21	RP11-419K12.1, CCDC26	rs74865311-G	0.036377	2E-28		0.06752151	[0.056-0.079] unit increase	Affymetrix [93095623] (imputed)	N
1582	chr8	130698431	130698432	rs11785932	33109212	Chang H	2020-10-28	BMC Med	Genetic architecture of cardiometabolic risks in people living with HIV.	HDL cholesterol levels in HIV infection	3,095 European ancestry individuals, 3,189 African American individuals	NA	8q24.21	CCDC26, GSDMC	rs11785932-?		6E-6	(African American)	0.1731235	[0.098-0.248] unit increase	Illumina [13620258] (imputed)	N
1582	chr8	130698431	130698432	rs11785932	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	8q24.21		rs11785932-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1582	chr8	130698431	130698432	rs11785932	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	8q24.21	NR	rs11785932-T	0.306729	5E-12		0.0232384	[0.017-0.03] unit decrease	NR [19129689] (imputed)	N
1582	chr8	130699139	130699140	rs10956486	32339537	Roberts V	2020-04-24	J Invest Dermatol	Genome wide association study identifies genetic associations with perceived age.	Youthful appearance (self-reported)	423,992 European ancestry individuals	NA	8q24.21	GSDMC	rs10956486-T	0.680347	2E-55		0.9297125	NR	Affymetrix [~ 9600000] (imputed)	N
1582	chr8	130699860	130699861	rs4236746	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	8q24.21	RP11-419K12.1	rs4236746-G	0.9748201	8E-17		0.05888279	[0.045-0.073] unit increase	Affymetrix [93095623] (imputed)	N
1582	chr8	130699860	130699861	rs4236746	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	8q24.21	RP11-419K12.1	rs4236746-G	0.9748149	5E-17		0.0592694	[0.045-0.073] unit increase	Affymetrix [93095623] (imputed)	N
1582	chr8	130699860	130699861	rs4236746	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	8q24.21		rs4236746-?	NR	1E-14				NR [~ 8900000] (imputed)	N
1582	chr8	130702757	130702758	rs17182325	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8q24.21	FAM49B	rs17182325-?	NR	4E-6	(beta aminoisobutyric acid)	0.17897579	[0.1-0.25] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1582	chr8	130708704	130708705	rs17274130	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	8q24.21	NR	rs17274130-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1582	chr8	130711598	130711599	rs77753889	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	8q24.21	RP11-419K12.1	rs77753889-A	NR	2E-8		0.0310311	[0.02-0.042] unit decrease	Affymetrix [323123] (imputed)	N
1582	chr8	130717754	130717755	rs10956488	33888516	Zheng T	2021-04-22	Gut	Genome-wide analysis of 944 133 individuals provides insights into the etiology of haemorrhoidal disease.	Haemorrhoidal disease	218,920 European ancestry cases, 725,213 European ancestry controls	NA	8q24.21	GSDMC	rs10956488-?	0.15190000000000003	2E-9		1.03	[1.02-1.04]	Affymetrix, Illumina [8494288] (imputed)	N
1582	chr8	130718771	130718772	rs7833174	30261039	Suri P	2018-09-27	PLoS Genet	Genome-wide meta-analysis of 158,000 individuals of European ancestry identifies three loci associated with chronic back pain.	Chronic back pain	29,531 European ancestry cases, 128,494 European ancestry controls	50,915 British ancestry cases, 232,837 British ancestry controls	8q24.21	CCDC26, GSDMC	rs7833174-T	0.77	4E-13		1.05	[1.04-1.06]	Affymetrix, Illumina [up to 9775703] (imputed)	N
1582	chr8	130718858	130718859	rs7814941	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	8q24.21	CCDC26	rs7814941-A	0.79649	1E-19		0.0208762	[0.016-0.025] unit decrease	NR [13737936] (imputed)	N
1582	chr8	130719566	130719567	rs7815955	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	8q24.21		rs7815955-?	NR	1E-132				NR [~ 8900000] (imputed)	N
1582	chr8	130719622	130719623	rs7816342	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	8q24.21		rs7816342-A	NR	2E-82		0.0275	[0.025-0.03] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1582	chr8	130719622	130719623	rs7816342	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	8q24.21	AC103718.1	rs7816342-A	0.2326	4E-35		0.0277	[0.023-0.032] unit decrease	Affymetrix [18391927] (imputed)	N
1582	chr8	130719717	130719718	rs7816131	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	8q24.21		rs7816131-T	NR	1E-10		0.0123	[0.0086-0.016] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1582	chr8	130720645	130720646	rs6470763	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	8q24.21		rs6470763-C	0.640072	4E-24		0.0212022	[0.017-0.025] unit decrease	Illumina [13479295] (imputed)	N
1582	chr8	130720645	130720646	rs6470763	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	8q24.21	CCDC26, GSDMC	rs6470763-?	NR	7E-26		0.031229472	[0.025-0.037] unit decrease	Illumina [27896057] (imputed)	N
1582	chr8	130720645	130720646	rs6470763	30690781	Pei YF	2019-02-28	J Bone Miner Res	Joint Association Analysis Identified 18 New Loci for Bone Mineral Density.	Heel bone mineral density (MTAG)	at least 142,487 individuals	NA	8q24.21	NR	rs6470763-G	0.75	5E-8		0.03	[0.02-0.04] unit decrease	NR [9704453]	N
1582	chr8	130721793	130721797	rs35383270	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	8q24.21	MTRF1LP2	rs35383270-A	0.2006	1E-8		0.0481	[0.032-0.065] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1582	chr8	130723727	130723728	rs4733724	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	8q24.21	NR	rs4733724-?	NR	8E-19				Affymetrix [~ 8270000] (imputed)	N
1582	chr8	130723727	130723728	rs4733724	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	8q24.21	NR	rs4733724-?	NR	9E-7		0.03371732	[0.02-0.047] unit decrease	Illumina [34656550] (imputed)	N
1582	chr8	130723727	130723728	rs4733724	30374069	Styrkarsdottir U	2018-10-29	Nat Genet	Meta-analysis of Icelandic and UK data sets identifies missense variants in SMO, IL11, COL11A1 and 13 more new loci associated with osteoarthritis.	Osteoarthritis (hip)	17,151 European ancestry cases, 596,639 European ancestry controls	NA	8q24.21	Intergenic	rs4733724-A	NR	7E-12	(additive)	1.11	[1.08-1.14]	Affymetrix, Illumina [11554240] (imputed)	N
1582	chr8	130723727	130723728	rs4733724	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	8q24.21	MLZE	rs4733724-A	0.802	1E-41		0.05	[0.042-0.058] unit increase	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
1582	chr8	130723791	130723792	rs6651255	28223688	Bjornsdottir G	2017-02-22	Nat Commun	Sequence variant at 8q24.21 associates with sciatica caused by lumbar disc herniation.	Sciatica caused by lumbar disc herniation (treated with microdiscectomy)	3,097 Icelandic ancestry cases, 1,651 non-array typed, familial imputed Icelandic ancestry cases, 132,966 Icelandic ancestry controls, 149,624 non-array typed, familial imputed Icelandic ancestry controls	NR	8q24.21	GSDMC, CCDC26	rs6651255-?	0.767	6E-12		1.23	[1.16-1.30]	Illumina [21568490] (imputed)	N
1582	chr8	130725652	130725652	rs148846943	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8q24.21	RP11-274M4.1	rs148846943-TG	NR	3E-10		0.0196041	[0.014-0.026] unit decrease	Affymetrix [321114] (imputed)	N
1582	chr8	130725652	130725652	rs148846943	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	8q24.21	RP11-274M4.1	rs148846943-TG	NR	5E-12		0.0195572	[0.014-0.025] unit decrease	Affymetrix [321016] (imputed)	N
1582	chr8	130725664	130725665	rs6470764	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	8q24.21	NR	rs6470764-?	NR	1E-6		0.02996208	[0.018-0.042] unit decrease	Illumina [34656550] (imputed)	N
1582	chr8	130725664	130725665	rs6470764	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	8q24.21	GSDMC	rs6470764-T	0.1982	8E-18	(EA)	0.0386	[0.03-0.047] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1582	chr8	130725664	130725665	rs6470764	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	8q24.21	GSDMC	rs6470764-T	0.1982	2E-9	(EA, women)	0.035	[0.024-0.046] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1582	chr8	130725664	130725665	rs6470764	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	8q24.21	GSDMC	rs6470764-T	0.1982	1E-11	(EA,men)	0.0436	[0.031-0.056] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1582	chr8	130725664	130725665	rs6470764	25281659	van der Valk RJ	2014-10-03	Hum Mol Genet	A novel common variant in DCST2 is associated with length in early life and height in adulthood.	Infant length	28,238 European ancestry individuals	NA	8q24.21	GSDMC	rs6470764-T	0.203	1E-6		0.054	[0.032-0.076] unit decrease	Affymetrix, Illumina [2193675] (imputed)	N
1582	chr8	130725664	130725665	rs6470764	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	8q24.21	GSDMC	rs6470764-T	0.2	2E-28		0.05	[NR] unit decrease	Affymetrix, Illumina [2834208] (imputed)	N
1582	chr8	130729517	130729518	rs4368942	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8q24.21	RP11-274M4.1	rs4368942-G	NR	7E-12		0.0265823	[0.019-0.034] unit decrease	Affymetrix [321114] (imputed)	N
1582	chr8	130730279	130730280	rs11984666	34450027	Boer CG	2021-08-24	Cell	Deciphering osteoarthritis genetics across 826,690 individuals from 9 populations.	Osteoarthritis (with total hip replacement)	23,021 European ancestry cases, 296,016 European ancestry controls	NA	8q24.21		rs11984666-A	0.199	2E-15		0.8970892	[0.873492697-0.9213231]	Affymetrix, Illumina [NR] (imputed)	N
1582	chr8	130731375	130731376	rs4733725	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	8q24.21	NR	rs4733725-?	NR	3E-9	(male)	0.2577	[0.17-0.34] unit decrease	Affymetrix [7794483] (imputed)	N
1582	chr8	130731375	130731376	rs4733725	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	8q24.21	NR	rs4733725-?	NR	3E-10		0.17289	[0.12-0.23] unit decrease	Affymetrix [7794483] (imputed)	N
1582	chr8	130731483	130731484	rs4733727	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	8q24.21	MLZE	rs4733727-T	0.497923	8E-10		0.01223	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1582	chr8	130731483	130731484	rs4733727	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	8q24.21	MLZE	rs4733727-T	0.497923	5E-14	(females)	0.01968	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1582	chr8	130731483	130731484	rs4733727	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	8q24.21	MLZE	rs4733727-T	0.497923	3E-9	(females)	0.01522	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1582	chr8	130731483	130731484	rs4733727	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	8q24.21	MLZE	rs4733727-T	0.497923	3E-8		0.01138	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1582	chr8	130731562	130731563	rs4733728	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	8q24.21	RP11-274M4.1	rs4733728-A	NR	2E-9		0.018503	[0.012-0.025] unit decrease	Affymetrix [323123] (imputed)	N
1582	chr8	130732739	130732740	rs7831774	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	8q24.21	RP11-274M4.1	rs7831774-A	NR	3E-11		0.0376566	[0.027-0.049] unit decrease	Affymetrix [321016] (imputed)	N
1582	chr8	130734460	130734461	rs2062078	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	8q24.21	NR	rs2062078-?	NR	1E-6		0.02886353	[0.017-0.04] unit decrease	Illumina [34656550] (imputed)	N
1582	chr8	130734460	130734461	rs2062078	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	8q24.21	GSDMC	rs2062078-T	0.73	1E-13		0.032	[0.02-0.044] unit decrease	Affymetrix, Illumina [2704730] (imputed)	N
1582	chr8	130735982	130735983	rs12674957	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	8q24.21	RP11-274M4.1	rs12674957-A	NR	1E-9		0.0427572	[0.029-0.057] unit decrease	Affymetrix [323123] (imputed)	N
1582	chr8	130735982	130735983	rs12674957	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	8q24.21	NR	rs12674957-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
1582	chr8	130736696	130736697	rs6470765	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in non-smokers	77,113 European ancestry women, 47,319 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	8q24.21	GSDMC	rs6470765-A	0.777	9E-10		0.023	[0.015-0.031] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1582	chr8	130736696	130736697	rs6470765	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	8q24.21	GSDMC	rs6470765-A	NR	9E-11				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1582	chr8	130736696	130736697	rs6470765	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	8q24.21	GSDMC	rs6470765-A	0.777	3E-12		0.024	[0.018-0.03] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1582	chr8	130738456	130738457	rs4733732	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	8q24.21	RP11-274M4.1	rs4733732-T	NR	5E-27		0.0410229	[0.034-0.048] unit decrease	Affymetrix [323123] (imputed)	N
1582	chr8	130738971	130738972	rs7826493	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	8q24.21		rs7826493-?	NR	1E-23				NR [~ 8900000] (imputed)	N
1582	chr8	130746301	130746302	rs73403218	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	8q24.21	RP11-274M4.1	rs73403218-T	NR	8E-12		0.0314957	[0.022-0.041] unit decrease	Affymetrix [321016] (imputed)	N
1582	chr8	130746301	130746302	rs73403218	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	8q24.21	RP11-274M4.1	rs73403218-T	NR	3E-13		0.0366107	[0.027-0.046] unit decrease	Affymetrix [323123] (imputed)	N
1582	chr8	130748056	130748057	rs559128832	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	225,112 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	445,360 individuals	8q24.21	intergenic	rs559128832-A	6.0E-4	3E-10		4.5228	[3.12-5.93] mmHg increase	Affymetrix [NR] (imputed)	N
1582	chr8	130763235	130763236	rs73406807	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	8q24.21	GSDMC	rs73406807-A	NR	1E-11		0.0422191	[0.03-0.054] unit decrease	Affymetrix [323123] (imputed)	N
1582	chr8	130768503	130768503	rs60890741	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Osteoarthritis (hip)	15,704 European ancestry cases, 378,169 European ancestry controls	NA	8q24.21	NR	rs60890741-C	0.86	5E-9		1.11	[1.08-1.16]	Affymetrix, Illumina [up to 17000000] (imputed)	N
1582	chr8	130772882	130772882	rs11276511	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	8q24.21	GSDMC	rs11276511-T	NR	4E-8		0.0155979	[0.01-0.021] unit increase	Affymetrix [321016] (imputed)	N
1582	chr8	130773457	130773458	rs12542856	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	8q24.21	GSDMC	rs12542856-T	NR	1E-11		0.0302375	[0.022-0.039] unit decrease	Affymetrix [323123] (imputed)	N
1582	chr8	130774781	130774782	rs76880196	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	8q24.21	NR	rs76880196-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
1582	chr8	130786450	130786451	rs12544672	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	8q24.21	GSDMC	rs12544672-G	NR	4E-11		0.0258555	[0.018-0.034] unit decrease	Affymetrix [321016] (imputed)	N
1582	chr8	130808187	130808188	rs72718340	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	8q24.21	GSDMC	rs72718340-A	NR	2E-8		0.0204341	[0.013-0.028] unit decrease	Affymetrix [321016] (imputed)	N
1583	chr8	130820038	130820039	rs2128382	23266556	Peters U	2012-12-21	Gastroenterology	Identification of Genetic Susceptibility Loci for Colorectal Tumors in a Genome-Wide Meta-analysis.	Colorectal cancer	12,696 European ancestry colorectal tumor cases, 15,113 European ancestry controls	958 European ancestry colorectal tumor cases, 909 European ancestry controls, up to 2,098 East Asian ancestry colorectal tumor cases, up to 5,749 East Asian ancestry controls	8q24.21	intergenic	rs2128382-?	0.82	8E-6		1.11	[1.06-1.16]	Affymetrix, Illumina [2708280] (imputed)	N
1583	chr8	130853446	130853447	rs837065	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	8q24.21		rs837065-?	NR	5E-12				NR [~ 8900000] (imputed)	N
1583	chr8	130901908	130901909	rs2086641	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	8q24.21	FAM49B	rs2086641-T	0.7225	2E-8		0.0605	[0.04-0.081] unit decrease	NR [7784415] (imputed)	N
1583	chr8	130903965	130903966	rs408398	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	8q24.21		rs408398-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1583	chr8	130929165	130929166	rs401526	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	8q24.21	Intergenic	rs401526-T	0.5154	3E-9	(MTAG)	0.0098	[0.0067-0.0129] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1583	chr8	130929165	130929166	rs401526	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	8q24.21		rs401526-T	0.5258	1E-13		0.0104	[0.0077-0.0131] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1583	chr8	130929165	130929166	rs401526	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	8q24.21	Intergenic	rs401526-T	0.5258	2E-14	(MTAG)	0.0101	[0.0076-0.0126] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1583	chr8	130932426	130932427	rs298601	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	8q24.21		rs298601-T	0.5237	7E-14	(conditional-joint)	0.0105	[0.0078-0.0132] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1584	chr8	130952110	130952111	rs11785995	30891314	Saad MN	2019-01-18	J Adv Res	Studying the effects of haplotype partitioning methods on the RA-associated genomic results from the North American Rheumatoid Arthritis Consortium (NARAC) dataset.	Rheumatoid arthritis	868 European ancestry cases, 1,194 European ancestry controls	NA	8q24.21	FAM49B	rs11785995-G	0.938	2E-10				NR [509413]	N
1584	chr8	130958950	130958951	rs16904179	23726511	Xie P	2013-05-28	Biol Psychiatry	Genome-wide association study identifies new susceptibility loci for posttraumatic stress disorder.	Post-traumatic stress disorder (asjusted for relatedness)	up to 308 European ancestry cases, up to 1,538 European ancestry controls, up to 456 African American cases, up to 2,936 African American controls	NA	8q24.21	FAM49B	rs16904179-?	NR	7E-7	(Whole cohort; AA)			Illumina [up to 871502]	N
1584	chr8	130971288	130971289	rs6470787	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	8q24.21		rs6470787-A	0.692	9E-13				Affymetrix [10369434] (imputed)	N
1584	chr8	130971288	130971289	rs6470787	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q24.21	NR	rs6470787-G	0.356663	3E-24				Affymetrix, Illumina [23472807] (imputed)	N
1584	chr8	130971524	130971527	rs10537307	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	8q24.21		rs10537307-C	NR	5E-18		0.0195	[0.015-0.024] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
1584	chr8	130971524	130971527	rs10537307	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	8q24.21	FAM49B	rs10537307-C	0.310339	8E-14		0.018083343	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1584	chr8	130971524	130971527	rs10537307	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	8q24.21	FAM49B	rs10537307-C	0.310318	2E-20		0.022337703	[0.018-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1584	chr8	130976073	130976074	rs16904181	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	8q24.21	FAM49B	rs16904181-A	0.3021	1E-10		0.0254708	[0.018-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
1584	chr8	130980471	130980472	rs10092658	18464913	Melzer D	2008-05-09	PLoS Genet	A genome-wide association study identifies protein quantitative trait loci (pQTLs).	Protein quantitative trait loci	1,200 European ancestry individuals	up to 4,590 European ancestry individuals	8q24.21	FAM49B	rs10092658-?	0.07	6E-6	(Aldolase)			Illumina [496032]	N
1584	chr8	130987887	130987888	rs837231	31005965	Coltell O	2019-04-21	Am J Clin Nutr	Association between taste perception and adiposity in overweight or obese older subjects with metabolic syndrome and identification of novel taste-related genes.	Sour taste perception in obesity with metabolic syndrome	378 individuals	NA	8q24.21	FAM49B	rs837231-T	0.326	2E-6		0.477	[0.28-0.67] unit increase	Illumina [622468]	N
1584	chr8	131010697	131010698	rs12548670	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	8q24.21		rs12548670-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1584	chr8	131010697	131010698	rs12548670	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	8q24.21	NR	rs12548670-A	0.323613	1E-10		0.0215372	[0.015-0.028] unit increase	NR [19129689] (imputed)	N
1584	chr8	131024700	131024701	rs2060985	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	8q24.21		rs2060985-G	NR	5E-15		0.0159	[0.012-0.02] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
1584	chr8	131025817	131025818	rs1466226	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	8q24.21		rs1466226-T	0.459	2E-10				Affymetrix [10369434] (imputed)	N
1584	chr8	131025817	131025818	rs1466226	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	8q24.21	FAM49B	rs1466226-C	0.542433	6E-19		0.020206327	[0.016-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1584	chr8	131025817	131025818	rs1466226	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	8q24.21	FAM49B	rs1466226-C	0.541798	1E-58		0.035926323	[0.032-0.04] unit decrease	Affymetrix [93095623] (imputed)	N
1584	chr8	131025817	131025818	rs1466226	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	8q24.21	FAM49B	rs1466226-C	0.541764	7E-10		0.013842069	[0.0094-0.0182] unit decrease	Affymetrix [93095623] (imputed)	N
1584	chr8	131025958	131025959	rs1466225	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	8q24.21		rs1466225-?	NR	5E-16				NR [~ 8900000] (imputed)	N
1584	chr8	131026259	131026260	rs6986601	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	8q24.21	FAM49B	rs6986601-G	0.542506	8E-15		0.017371269	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1584	chr8	131026259	131026260	rs6986601	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	8q24.21	FAM49B	rs6986601-G	0.542492	5E-16		0.0181725	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1584	chr8	131026259	131026260	rs6986601	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	8q24.21	FAM49B	rs6986601-G	0.54247	1E-15		0.017784722	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1584	chr8	131026259	131026260	rs6986601	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	8q24.21	FAM49B	rs6986601-G	0.542522	2E-12		0.015636511	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1584	chr8	131026259	131026260	rs6986601	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	8q24.21	FAM49B	rs6986601-G	0.542508	4E-13		0.016207436	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1584	chr8	131026259	131026260	rs6986601	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q24.21	NR	rs6986601-A	0.451194	1E-14				Affymetrix, Illumina [22063850] (imputed)	N
1584	chr8	131026259	131026260	rs6986601	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	8q24.21	NR	rs6986601-A	0.456202	1E-16		0.01563	[0.012-0.019] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
1584	chr8	131026458	131026459	rs6987080	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	8q24.21		rs6987080-G	NR	3E-11		0.0132	[0.0093-0.0171] unit increase	Affymetrix, Illumina [20535842] (imputed)	N
1584	chr8	131026458	131026459	rs6987080	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	8q24.21		rs6987080-G	NR	6E-16		0.0162	[0.012-0.02] unit increase	Affymetrix, Illumina [20536605] (imputed)	N
1584	chr8	131026458	131026459	rs6987080	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	8q24.21	NR	rs6987080-G	NR	2E-10		0.0154	[0.011-0.02] unit increase	Affymetrix [9000000] (imputed)	N
1584	chr8	131026458	131026459	rs6987080	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	8q24.21	NR	rs6987080-G	NR	3E-9		0.0155	[0.01-0.021] unit increase	Affymetrix [9000000] (imputed)	N
1584	chr8	131026458	131026459	rs6987080	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	8q24.21	FAM49B	rs6987080-G	0.436598	4E-14		0.0171688	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1584	chr8	131026458	131026459	rs6987080	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q24.21	NR	rs6987080-G	0.468486	5E-14				Affymetrix, Illumina [21126107] (imputed)	N
1584	chr8	131026458	131026459	rs6987080	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	8q24.21	NR	rs6987080-G	0.436805	8E-14		0.015095	[0.011-0.019] SD unit increase	Affymetrix, Illumina [50282193] (imputed)	N
1584	chr8	131027477	131027478	rs147237681	33590662	Heilbronner U	2021-02-15	Am J Med Genet B Neuropsychiatr Genet	"The Heidelberg Five" personality dimensions: Genome-wide associations, polygenic risk for neuroticism, and psychopathology 20 years after assessment.	Psychoticism	3,268 European ancestry individuals	NA	8q24.21	NR	rs147237681-C	0.9863	6E-9		0.6113	[0.41-0.82] unit decrease	Illumina [8348463] (imputed)	N
1584	chr8	131033495	131033496	rs16904191	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NA	8q24.21	intergenic	rs16904191-G	0.28	2E-7		1.07	[1.04-1.09]	Affymetrix, Illumina [~ 2300000] (imputed)	N
1584	chr8	131060951	131060952	rs79557073	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Systolic blood pressure (baseline)	5,304 African American individuals, 13,137 European ancestry individuals, 1,317 Hispanic individuals, 1,439 admixed individuals, 703 Chinese ancestry individuals	6,500 African American individuals, 2,451 European ancestry individuals, 2,869 Hispanic individuals	8q24.21	NR	rs79557073-A	0.9766	3E-7		7.7391	[4.79-10.69] mmHg decrease	Affymetrix, Illumina [NR] (imputed)	N
1584	chr8	131060951	131060952	rs79557073	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Systolic blood pressure (baseline)	5,304 African American individuals	6,500 African American individuals	8q24.21	NR	rs79557073-A	0.9766	3E-7		7.7391	[4.79-10.69] mmHg increase	Affymetrix, Illumina [NR] (imputed)	N
1585	chr8	131075858	131075859	rs2045091	30089514	Chen JA	2018-08-08	Mol Neurodegener	Joint genome-wide association study of progressive supranuclear palsy identifies novel susceptibility loci and genetic correlation to neurodegenerative diseases.	Progressive supranuclear palsy	1,646 European ancestry cases, 10,662 European ancestry controls	NA	8q24.21	ASAP1	rs2045091-?	NR	5E-7		1.25		Illumina [6419662] (imputed)	N
1585	chr8	131075858	131075859	rs2045091	30089514	Chen JA	2018-08-08	Mol Neurodegener	Joint genome-wide association study of progressive supranuclear palsy identifies novel susceptibility loci and genetic correlation to neurodegenerative diseases.	Progressive supranuclear palsy	1,646 European ancestry cases, 10,662 European ancestry controls	NA	8q24.21	ASAP1	rs2045091-?		5E-7				Illumina [6419662] (imputed)	N
1585	chr8	131092412	131092413	rs6984045	19525955	Bahlo M	2009-06-14	Nat Genet	Genome-wide association study identifies new multiple sclerosis susceptibility loci on chromosomes 12 and 20.	Multiple sclerosis	1,618 European ancestry cases, 3,413 European ancestry controls	2,256 European ancestry cases, 2,310 European ancestry controls	8q24.21	ASAP1, DDEF1	rs6984045-C	0.02	2E-6		1.59	[NR]	Illumina [302098]	N
1585	chr8	131138978	131138979	rs111595456	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Nevus count or cutaneous melanoma	36,760 European ancestry cutaneous melanoma cases, 375,188 European ancestry controls, 12,930 European ancestry individuals, 52,847 individuals	NA	8q24.21	ASAP1	rs111595456-C	0.9666307	3E-10				Affymetrix, Illumina [NR] (imputed)	N
1585	chr8	131152664	131152665	rs4733770	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	8q24.21	NR	rs4733770-G	NR	8E-7		1.0526316	[NR]	Illumina [7158791] (imputed)	N
1585	chr8	131173178	131173179	rs62524650	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	8q24.21	ASAP1	rs62524650-C	0.374198	3E-18		0.0172952	[0.013-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1585	chr8	131179560	131179561	rs78363913	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	8q24.21	ASAP1	rs78363913-G	0.457611	8E-10		0.013932625	[0.0095-0.0184] unit decrease	Affymetrix [93095623] (imputed)	N
1585	chr8	131179560	131179561	rs78363913	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	8q24.21	ASAP1	rs78363913-G	0.4559	2E-23		0.03632117	[0.029-0.043] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1585	chr8	131201612	131201613	rs141721054	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	8q24.21	ASAP1	rs141721054-G	0.991	4E-6	(AA)	0.63	NR unit increase	Illumina [NR] (imputed)	N
1586	chr8	131290663	131290664	rs4733571	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	8q24.21	ASAP1	rs4733571-T	0.6274	6E-13		0.0141	[0.01-0.018] unit decrease	Affymetrix [18391927] (imputed)	N
1586	chr8	131296766	131296767	rs4733781	25774636	Curtis J	2015-03-16	Nat Genet	Susceptibility to tuberculosis is associated with variants in the ASAP1 gene encoding a regulator of dendritic cell migration.	Tuberculosis	5,530 European ancestry cases, 5,607 European ancestry controls	1,085 Russian ancestry cases, 2,865 Russian ancestry controls, 2,277 Sub-Saharan African ancestry cases, 2,360 Sub-Saharan African ancestry controls	8q24.21	ASAP1	rs4733781-A	0.687	4E-12				Affymetrix [7614862] (imputed)	N
1586	chr8	131296766	131296767	rs4733781	25774636	Curtis J	2015-03-16	Nat Genet	Susceptibility to tuberculosis is associated with variants in the ASAP1 gene encoding a regulator of dendritic cell migration.	Tuberculosis	5,530 European ancestry cases, 5,607 European ancestry controls	1,085 Russian ancestry cases, 2,865 Russian ancestry controls, 2,277 Sub-Saharan African ancestry cases, 2,360 Sub-Saharan African ancestry controls	8q24.21	ASAP1	rs4733781-A	0.687	3E-11	(Russian)	1.19	[1.14-1.25]	Affymetrix [7614862] (imputed)	N
1586	chr8	131305049	131305051	rs149696327	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Systolic blood pressure (baseline)	5,304 African American individuals, 13,137 European ancestry individuals, 1,317 Hispanic individuals, 1,439 admixed individuals, 703 Chinese ancestry individuals	6,500 African American individuals, 2,451 European ancestry individuals, 2,869 Hispanic individuals	8q24.21	NR	rs149696327-A	0.9752	2E-7		7.4832	[4.67-10.29] mmHg decrease	Affymetrix, Illumina [NR] (imputed)	N
1586	chr8	131305049	131305051	rs149696327	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Systolic blood pressure (baseline)	5,304 African American individuals	6,500 African American individuals	8q24.21	NR	rs149696327-A	0.9752	2E-7		7.4832	[4.67-10.29] mmHg increase	Affymetrix, Illumina [NR] (imputed)	N
1586	chr8	131314035	131314036	rs139795768	33590662	Heilbronner U	2021-02-15	Am J Med Genet B Neuropsychiatr Genet	"The Heidelberg Five" personality dimensions: Genome-wide associations, polygenic risk for neuroticism, and psychopathology 20 years after assessment.	Psychoticism	3,268 European ancestry individuals	NA	8q24.21	NR	rs139795768-T	0.9877	2E-8		0.6609	[0.43-0.89] unit decrease	Illumina [8348463] (imputed)	N
1586	chr8	131329464	131329465	rs16904247	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8q24.21	FAM49B	rs16904247-?	NR	2E-6	(creatine)	0.24830018	[0.15-0.35] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1586	chr8	131331011	131331012	rs1158569	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	8q24.21	ASAP1	rs1158569-?		3E-9				Affymetrix, Illumina [NR] (imputed)	N
1586	chr8	131331072	131331073	rs1158570	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	8q24.21	ASAP1	rs1158570-C	0.5233	3E-10		0.02289496	[0.016-0.03] unit increase	Affymetrix [~ 2500000] (imputed)	N
1587	chr8	131344744	131344745	rs7008182	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	8q24.21	ASAP1	rs7008182-A	0.487938	9E-71		0.040215272	[0.036-0.045] unit increase	Affymetrix [93095623] (imputed)	N
1587	chr8	131344744	131344745	rs7008182	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q24.21	NR	rs7008182-T	0.512326	2E-90				Affymetrix, Illumina [17210439] (imputed)	N
1587	chr8	131344744	131344745	rs7008182	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	8q24.21	NR	rs7008182-T	0.512634	1E-92		0.039346	[0.036-0.043] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
1587	chr8	131373886	131373887	rs10091130	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	8q24.21		rs10091130-?	NR	2E-13				NR [~ 8900000] (imputed)	N
1587	chr8	131387295	131387296	rs571444813	33075057	Li X	2020-10-19	PLoS Genet	Automated feature extraction from population wearable device data identified novel loci associated with sleep and circadian rhythms.	Sleep duration (> 10 hours)	90,515 individuals	NA	8q24.21	ASAP1	rs571444813-T	NR	5E-8		5.568	[4.95-6.18] unit increase	NR [11024754] (imputed)	N
1587	chr8	131395711	131395712	rs28396295	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	8q24.21	NR	rs28396295-T	0.411	4E-6	(IFNGR1_of_CD8p_T)			Illumina [5084123] (imputed)	N
1587	chr8	131417499	131417500	rs117161072	33590662	Heilbronner U	2021-02-15	Am J Med Genet B Neuropsychiatr Genet	"The Heidelberg Five" personality dimensions: Genome-wide associations, polygenic risk for neuroticism, and psychopathology 20 years after assessment.	Psychoticism	3,268 European ancestry individuals	NA	8q24.22	NR	rs117161072-G	0.9868	2E-9		0.6697	[0.45-0.89] unit decrease	Illumina [8348463] (imputed)	N
1587	chr8	131428927	131428928	rs749701944	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	8q24.22	ASAP1	rs749701944-A	0.0073	9E-6		0.4711	[0.26-0.68] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1587	chr8	131442850	131442851	rs10956525	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	8q24.22		rs10956525-?	NR	9E-10				NR [~ 8900000] (imputed)	N
1588	chr8	131472046	131472047	rs10110094	30804558	Grove J	2019-02-25	Nat Genet	Identification of common genetic risk variants for autism spectrum disorder.	Autism spectrum disorder	18,381 European ancestry cases, 27,969 European ancestry controls	2,119 European ancestry cases, 142,379 European ancestry controls	8q24.22	Intergenic	rs10110094-A	0.163	8E-7		1.091	[NR]	Illumina [9112387] (imputed)	N
1588	chr8	131523282	131523283	rs7000447	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	8q24.22	ASAP1, ADCY8	rs7000447-G	0.448	1E-6		2.35	[1.65-3.34]	Illumina [1556551]	N
1589	chr8	131615357	131615358	rs61430483	34154395	Brikell I	2021-06-22	Am J Psychiatry	Genetic, Clinical, and Sociodemographic Factors Associated With Stimulant Treatment Outcomes in ADHD.	Switch to non-stimulant treatment in ADHD	1,137 European ancestry cases, 3,854 European ancestry controls	NA	8q24.22		rs61430483-T	0.341	9E-6		0.038	[0.02-0.056] unit decrease	Illumina [6361597] (imputed)	N
1589	chr8	131617849	131617850	rs16904316	19901119	Trevino LR	2009-11-09	J Clin Oncol	Germline genetic variation in an organic anion transporter polypeptide associated with methotrexate pharmacokinetics and clinical effects.	Methotrexate pharmacokinetics (acute lymphoblastic leukemia)	315 European ancestry cases, 73 African American cases, 5 Asian ancestry cases, 247 cases	NA	8q24.22	intergenic	rs16904316-C	0.03	2E-6			[NR]	Affymetrix [398699]	N
1589	chr8	131637336	131637337	rs17311976	26955885	Lane JM	2016-03-09	Nat Commun	Genome-wide association analysis identifies novel loci for chronotype in 100,420 individuals from the UK Biobank.	Morning vs. evening chronotype	8,724 European ancestry evening chronotype individuals, 26,948 European ancestry morning chronotype individuals	NA	8q24.22	ADCY8	rs17311976-C	0.19	3E-8		1.13	[1.08-1.18]	Affymetrix [73355677] (imputed)	N
1589	chr8	131637336	131637337	rs17311976	26955885	Lane JM	2016-03-09	Nat Commun	Genome-wide association analysis identifies novel loci for chronotype in 100,420 individuals from the UK Biobank.	Chronotype	100,420 European ancestry individuals	NA	8q24.22	ADCY8	rs17311976-C	0.19	1E-6		0.028	[0.016-0.04] unit increase	Affymetrix [~ 73355677] (imputed)	N
1589	chr8	131639977	131639978	rs62517797	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Colorectal cancer	3,351 White British ancestry cases, 271,479 White British ancestry controls	NA	8q24.22		rs62517797-?	NR	9E-6		1.16722	[1.1-1.24]	NR [675173]	N
1589	chr8	131650812	131650813	rs6986527	33109212	Chang H	2020-10-28	BMC Med	Genetic architecture of cardiometabolic risks in people living with HIV.	HDL cholesterol levels in HIV infection	3,095 European ancestry individuals, 3,189 African American individuals	NA	8q24.22	ASAP1, ADCY8	rs6986527-?		8E-6	(EA)	0.11216259	[0.063-0.161] unit decrease	Illumina [13620258] (imputed)	N
1589	chr8	131652937	131652938	rs56092632	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	8q24.22	NR	rs56092632-?	NR	2E-6				Illumina [at least 7383741] (imputed)	N
1589	chr8	131691523	131691524	rs28428945	34417961	Guo D	2021-08-21	Biol Trace Elem Res	Preliminary study of genome-wide association identifies novel susceptibility genes for serum mineral elements in the Chinese Han population.	Iron levels	587 Han Chinese ancestry individuals	NA	8q24.22		rs28428945-?	NR	1E-7		0.135	[0.035-0.235] unit increase	Affymetrix [6423076] (imputed)	N
1589	chr8	131692884	131692885	rs72728275	34417961	Guo D	2021-08-21	Biol Trace Elem Res	Preliminary study of genome-wide association identifies novel susceptibility genes for serum mineral elements in the Chinese Han population.	Serum magnesium levels	587 Han Chinese ancestry individuals	NA	8q24.22		rs72728275-?	NR	1E-6		0.199	[-3.61124-4.00924] unit increase	Affymetrix [6423076] (imputed)	N
1590	chr8	131808168	131808169	rs263232	24677629	Wolf EJ	2014-03-27	Depress Anxiety	A genome-wide association study of clinical symptoms of dissociation in a trauma-exposed sample.	Post-traumatic stress disorder	484 European ancestry trauma-exposed individuals	NA	8q24.22	ADCY8	rs263232-?		6E-7		1.43	[0.88-1.98] unit increase	Illumina [1197702]	N
1590	chr8	131809471	131809472	rs142940201	29532581	Hallfors J	2018-03-13	Addict Biol	Genome-wide association study in Finnish twins highlights the connection between nicotine addiction and neurotrophin signaling pathway.	Smoking behaviour (maximum cigarettes in a 24 hour period)	1,711 Finnish ancestry ever smoker individuals from up to 739 families	NA	8q24.22	NR	rs142940201-C	0.0475	3E-6		5.164558	[3.00-7.33] unit increase	Illumina [9469131] (imputed)	N
1590	chr8	131812032	131812033	rs263238	21116278	Furney SJ	2010-11-30	Mol Psychiatry	Genome-wide association with MRI atrophy measures as a quantitative trait locus for Alzheimer's disease.	Total ventricular volume (Alzheimer's disease interaction)	424 European ancestry mild cognitive impairment cases, 236 European ancestry Alzheimer's disease cases, 279 European ancestry controls	NA	8q24.22	ADCY8	rs263238-?	NR	2E-6		0.006	[NR] unit increase	Illumina [478011]	N
1591	chr8	131921955	131921956	rs12547243	30014611	Weiss RB	2018-07-16	Ann Neurol	Long-range genomic regulators of THBS1 and LTBP4 modify disease severity in Duchenne muscular dystrophy.	Age at loss of ambulation in Duchenne muscular dystrophy	243 European ancestry cases, 10 cases	NA	8q24.22	NR	rs12547243-?	NR	3E-7	(EA)			Illumina [1735619]	N
1591	chr8	131921955	131921956	rs12547243	30014611	Weiss RB	2018-07-16	Ann Neurol	Long-range genomic regulators of THBS1 and LTBP4 modify disease severity in Duchenne muscular dystrophy.	Age at loss of ambulation in Duchenne muscular dystrophy	243 European ancestry cases, 10 cases	NA	8q24.22	NR	rs12547243-?	NR	2E-7				Illumina [1735619]	N
1591	chr8	131963415	131963418	rs138873021	31178898	Lin BM	2019-05-24	Front Genet	Genetics of Chronic Kidney Disease Stages Across Ancestries: The PAGE Study.	Mild to moderate chronic kidney disease	1,532 African American cases, 1,336 Hispanic cases, 575 East Asian cases, 608 Native Hawaiian cases, 42 American Indian cases, 57 cases, 13,761 African American controls, 19,317 Hispanic controls, 3,540 East Asian controls, 2,892 Native Hawaiian controls, 595 American Indian controls, 936 controls	NA	8q24.22	ADCY8	rs138873021-T	0.629	2E-7		1.17	[1.11-1.25]	Illumina [1438399] (imputed)	N
1592	chr8	132003419	132003420	rs73348588	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	8q24.22	NR	rs73348588-T	0.0195	8E-7	(EA)	0.1212	[0.073-0.169] unit increase	Illumina [~ 11800000] (imputed)	N
1592	chr8	132023601	132023602	rs885381	29594489	Apewokin S	2018-03-28	Support Care Cancer	Host genetic susceptibility to Clostridium difficile infections in patients undergoing autologous stem cell transplantation: a genome-wide association study.	Clostridium difficile infection in multiple myeloma	57 European ancestry cases, 589 European ancestry controls	NA	8q24.22	NR	rs885381-?		3E-6				Illumina [892589]	N
1593	chr8	132121916	132121917	rs1119997	31371054	Ruddy KJ	2019-07-29	Fertil Steril	Genetic predictors of chemotherapy-related amenorrhea in women with breast cancer.	Adverse response to chemotherapy (amenorrhea) in breast cancer	457 European ancestry amenorrheic cases, 711 European ancestry post-chemotherapy menses cases	NA	8q24.22	ADCY8	rs1119997-G	0.46	1E-6		1.3	[NR]	Illumina [5430816] (imputed)	N
1593	chr8	132147525	132147526	rs144706282	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in ever smokers	23,223 European ancestry cases,  16,964 European ancestry controls	NA	8q24.22	ADCY8, EFR3A	rs144706282-G	0.987092881	8E-6		1.4321419	[1.22-1.68]	Illumina [10439017] (imputed)	N
1594	chr8	132330715	132330716	rs10108033	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	8q24.22	NR	rs10108033-C	0.990183	3E-6	(IGP22)	2.8474	[1.65-4.05] unit increase	Illumina [~ 2500000] (imputed)	N
1594	chr8	132330715	132330716	rs10108033	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	8q24.22	NR	rs10108033-C	0.990183	1E-6	(IGP27)	2.9565	[1.76-4.15] unit increase	Illumina [~ 2500000] (imputed)	N
1594	chr8	132353734	132353735	rs4596632	23118974	Candille SI	2012-10-31	PLoS One	Genome-wide association studies of quantitatively measured skin, hair, and eye pigmentation in four European populations.	Eye color	175 European ancestry individuals	293 European ancestry individuals	8q24.22	ADCY8/EFR3A	rs4596632-C	0.33	3E-6	(Eye color)	0.167	[0.098-0.236] unit increase	Illumina [313763]	N
1595	chr8	132387456	132387457	rs7465601	28468790	Agopian AJ	2017-06-01	Circ Cardiovasc Genet	Genome-Wide Association Studies and Meta-Analyses for Congenital Heart Defects.	Left ventricular obstructive tract defect (inherited effect)	247 European ancestry trios, 70 non-European ancestry trios, 192 European and other ancestry trios	NA	8q24.22	intergenic	rs7465601-?	NR	8E-6		1.593473	[1.298288-1.955773]	Illumina [at least 4483243] (imputed)	N
1595	chr8	132404231	132404232	rs11991713	31557306	Wang RS	2019-09-26	Clin Pharmacol Ther	Pharmacogenomics and Placebo Response in a Randomized Clinical Trial in Asthma.	Subjective response to placebo treatment in childhood asthma (change in cough/wheeze)	250 European ancestry children	NA	8q24.22	AC104257.1	rs11991713-T	0.5	7E-6		0.79	NR unit increase	Illumina [NR] (imputed)	N
1595	chr8	132433064	132433065	rs41364745	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	8q24.22	Intergenic	rs41364745-?	NR	6E-6		2.109	[NR]	Affymetrix [492217] (imputed)	N
1595	chr8	132451454	132451455	rs13260032	30361487	Yan Q	2018-10-25	Mol Psychiatry	Genome-wide association study of brain amyloid deposition as measured by Pittsburgh Compound-B (PiB)-PET imaging.	Cerebral amyloid deposition (PET imaging)	983 European ancestry individuals	NR	8q24.22	ADCY8, EFR3A	rs13260032-C	0.44	5E-7		0.08	[NR] unit decrease	Illumina [at least 7000000] (imputed)	N
1595	chr8	132472101	132472102	rs10505574	26480920	Sung YJ	2015-10-20	Int J Obes (Lond)	Genome-wide association studies suggest sex-specific loci associated with abdominal and visceral fat.	Visceral adipose tissue	1,152 European ancestry males, 1,361 European ancestry females	NA	8q24.22	ADCY8	rs10505574-A	0.9	3E-7	(men)	0.09	[NR] unit increase	Affymetrix, Illumina [2473256] (imputed)	N
1595	chr8	132476128	132476129	rs1507456	29868124	Wu Y	2018-05-16	Front Genet	Genetics of Obesity Traits: A Bivariate Genome-Wide Association Analysis.	Body mass index and waist-hip ratio (pleiotropy)	139 Han Chinese ancestry dizygotic twin pairs	NA	8q24.22	LOC105375763	rs1507456-?	NR	7E-7		0.15	[NR] unit increase	Illumina [1365181]	N
1595	chr8	132497949	132497950	rs12114496	29594489	Apewokin S	2018-03-28	Support Care Cancer	Host genetic susceptibility to Clostridium difficile infections in patients undergoing autologous stem cell transplantation: a genome-wide association study.	Clostridium difficile infection in multiple myeloma	57 European ancestry cases, 589 European ancestry controls	NA	8q24.22	NR	rs12114496-?		3E-6				Illumina [892589]	N
1595	chr8	132510679	132510680	rs1395804	26480920	Sung YJ	2015-10-20	Int J Obes (Lond)	Genome-wide association studies suggest sex-specific loci associated with abdominal and visceral fat.	Visceral adipose tissue	1,152 European ancestry males, 1,361 European ancestry females	NA	8q24.22	EFR3A	rs1395804-T	0.12	6E-7	(men)	0.08	[NR] unit decrease	Affymetrix, Illumina [2473256] (imputed)	N
1596	chr8	132581722	132581723	rs1812948	33590662	Heilbronner U	2021-02-15	Am J Med Genet B Neuropsychiatr Genet	"The Heidelberg Five" personality dimensions: Genome-wide associations, polygenic risk for neuroticism, and psychopathology 20 years after assessment.	Locus of control over disease	3,268 European ancestry individuals	NA	8q24.22	NR	rs1812948-G	0.8025	4E-7		0.1549	[0.095-0.215] unit increase	Illumina [8348463] (imputed)	N
1598	chr8	132778069	132778070	rs11774537	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8q24.22	OC90	rs11774537-?	NR	5E-6	(fum; mal; alpha keto)	1.1826138	[0.68-1.69] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1598	chr8	132871607	132871608	rs11997238	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	8q24.22	NR	rs11997238-?	NR	6E-9				Affymetrix [~ 8270000] (imputed)	N
1598	chr8	132871607	132871608	rs11997238	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	8q24.22		rs11997238-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1598	chr8	132871607	132871608	rs11997238	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	8q24.22	NA	rs11997238-A	0.9077	6E-10		0.0188	[0.013-0.025] unit decrease	NR [~ 27400000] (imputed)	N
1598	chr8	132879277	132879278	rs34069481	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	8q24.22		rs34069481-G	NR	4E-8		0.0145	[0.0094-0.0196] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1598	chr8	132879794	132879795	rs73708054	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	8q24.22	EFR3A	rs73708054-C	0.252	4E-8		1.04	[1.03-1.06]	Affymetrix, Illumina [11800000] (imputed)	N
1598	chr8	132882286	132882287	rs4596634	33223526	Hong S	2020-11-22	Transl Psychiatry	Genome-wide association study of Alzheimer's disease CSF biomarkers in the EMIF-AD Multimodal Biomarker Discovery dataset.	Central cerebrospinal fluid amyloid beta 42 to 40 ratio (abnormal vs normal)	418 European ancestry cases, 259 European ancestry controls	NA	8q24.22		rs4596634-T	0.213	1E-6		0.466	[0.3432-0.6327]	Illumina [7778465] (imputed)	N
1598	chr8	132882637	132882637	rs150255550	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	8q24.22		rs150255550-ATG	NR	2E-8		0.0132	[0.0087-0.0177] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1599	chr8	132921440	132921441	rs1392872	30120420	Sun R	2018-08-17	Mol Psychiatry	Identification of novel loci associated with infant cognitive ability.	Mental composite score	502 Bangladeshi ancestry infants, 462 Hispanic or Latin American infants	NA	8q24.22	NR	rs1392872-?	NR	5E-6		2.69	[1.54-3.85] unit decrease	Illumina [552487]	N
1599	chr8	132934537	132934538	rs7004484	25866641	Xu W	2015-03-19	Biomark Res	A genome wide association study on Newfoundland colorectal cancer patients' survival outcomes.	Survival in rectal cancer	171 European ancestry cases	NA	8q24.22	EFR3A	rs7004484-?		2E-6	(overall survival)	2.79	[1.83-4.25]	Illumina [729737]	N
1599	chr8	132983706	132983707	rs4736525	28642124	Hensman Moss DJ	2017-06-20	Lancet Neurol	Identification of genetic variants associated with Huntington's disease progression: a genome-wide association study.	Huntington's disease progression	1,989 European and unknown ancestry mutation carriers	NA	8q24.22	EFR3A, OC90	rs4736525-?	NR	3E-6				Illumina [9650000] (imputed)	N
1599	chr8	132999935	132999936	rs2270875	23374588	Martinelli-Boneschi F	2013-01-29	Neurobiol Aging	Pharmacogenomics in Alzheimer's disease: a genome-wide association study of response to cholinesterase inhibitors.	Response to cholinesterase inhibitors in Alzheimer's disease	92 European ancestry cases, 77 European ancestry controls	94 European ancestry cases, 74 European ancestry controls	8q24.22	EFR3A	rs2270875-G	0.16	9E-6	(MMSE)	2.84	[NR] unit decrease	Illumina [522109]	N
1599	chr8	133021148	133021149	rs28562159	34020725	Reddy JS	2021-05-21	Acta Neuropathol Commun	Genome-wide analysis identifies a novel LINC-PINT splice variant associated with vascular amyloid pathology in Alzheimer's disease.	Cerebral amyloid angiopathy x APOEe4 status interaction in Alzheimer's disease	534 European ancestry APOEe4 carriers, 287 European ancestry APOEe4 non-carriers	NA		EFR3A	rs28562159-A	0.31	3E-6				Illumina [1679420] (imputed)	N
1599	chr8	133023162	133023163	rs4736529	34158603	Liu X	2021-06-22	Pharmacogenomics J	New genetic variants associated with major adverse cardiovascular events in patients with acute coronary syndromes and treated with clopidogrel and aspirin.	Major adverse cardiovascular events in response to aspirin and clopidogrel treatment	51 Han Chinese ancestry cases, 117 Han Chinese ancestry controls	123 Han Chinese ancestry cases, 1,580 Han Chinese ancestry controls	8q24.22		rs4736529-G	0.06	3E-6		2.41	[1.45-4.27]	NR [127834]	N
1599	chr8	133029232	133029233	rs10107133	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	8q24.22	NR	rs10107133-?	NR	2E-6		0.008343	[0.0049-0.0118] unit increase	Affymetrix [805426] (imputed)	N
1599	chr8	133034836	133034837	rs12542759	24556642	Zeng Z	2014-02-18	Caries Res	Genome-wide association study of primary dentition pit-and-fissure and smooth surface caries.	Pit-and-Fissure caries	979 European ancestry individuals	NA	8q24.22	OC90	rs12542759-T	0.2881	4E-6		0.8026	[NR] unit increase	Illumina [1216074] (imputed)	N
1600	chr8	133054626	133054627	rs74705672	30487263	Pollack S	2018-11-28	Diabetes	Multiethnic Genome-wide Association Study of Diabetic Retinopathy using Liability Threshold Modeling of Duration of Diabetes and Glycemic Control.	Proliferative diabetic retinopathy (vs no DR)	398 European ancestry cases, 1,970 European ancestry controls, 1,097 African American cases, 941 African American controls	1,354 East Asian ancestry cases, 1130 East Asian ancestry controls, 801 European ancestry cases, 2,880 European ancestry controls, 232 Hispanic cases, 1,048 Hispanic controls	8q24.22	NR	rs74705672-?	NR	1E-6	(AA, adjusted for duration of diabetes and glycemic control)	1.4492754	[NR]	Affymetrix, Illumina [NR] (imputed)	N
1600	chr8	133103289	133103290	rs2014357	20585627	Eriksson N	2010-06-24	PLoS Genet	Web-based, participant-driven studies yield novel genetic associations for common traits.	Common traits (Other)	9,126 European ancestry individuals	NA	8q24.22	NR	rs2014357-?	NR	9E-7	(sweet tooth)			Illumina [535076]	N
1600	chr8	133119960	133119961	rs7822239	25129146	Wu C	2014-08-17	Nat Genet	Joint analysis of three genome-wide association studies of esophageal squamous cell carcinoma in Chinese populations.	Esophageal squamous cell carcinoma	5,337 Han Chinese ancestry cases, 5,787 Han Chinese ancestry controls	9,654 Han Chinese ancestry cases, 10,058 Han Chinese ancestry  controls	8q24.22	NR	rs7822239-A	0.73	8E-6		1.1	[1.05-1.14]	Affymetrix, Illumina [7556215] (imputed)	N
1601	chr8	133228751	133228752	rs186555608	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder	29,475 European ancestry cases, 63,482 European ancestry controls	NA	8q24.22	NR	rs186555608-C	0.984715	1E-6		1.0752687	[1.04-1.11]	Affymetrix [7791636] (imputed)	N
1602	chr8	133320794	133320795	rs138693040	29213071	Mendez-Giraldez R	2017-12-06	Sci Rep	GWAS of the electrocardiographic QT interval in Hispanics/Latinos generalizes previously identified loci and identifies population-specific signals.	QT interval	15,997 Hispanic/Latino individuals	NA	8q24.22	KCNQ3	rs138693040-T	0.99	2E-6		11.99	[7.11-16.87] ms increase	Affymetrix, Illumina [up to 17586686] (imputed)	N
1602	chr8	133331037	133331038	rs16904657	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	8q24.22	NR	rs16904657-A	NR	6E-6	(GEE model)	0.64115	[0.36-0.92] unit decrease	NR [NR] (imputed)	N
1602	chr8	133340554	133340555	rs111301880	32180562	Kulyte A	2020-01-25	Mol Metab	Genome-wide association study of adipocyte lipolysis in the GENetics of adipocyte lipolysis (GENiAL) cohort.	Stimulated adipocyte lipolysis	874 European ancestry individuals	NA	8q24.22	NR	rs111301880-C	0.974369	7E-6		0.206	[0.12-0.29] unit decrease	NR [9260588] (imputed)	N
1602	chr8	133340554	133340555	rs111301880	32180562	Kulyte A	2020-01-25	Mol Metab	Genome-wide association study of adipocyte lipolysis in the GENetics of adipocyte lipolysis (GENiAL) cohort.	Spontaneous adipocyte lipolysis	856 European ancestry individuals	NA	8q24.22	NR	rs111301880-C	0.974369	7E-6		0.278	[0.16-0.4] unit increase	NR [9260588] (imputed)	N
1602	chr8	133369093	133369094	rs978152	23870195	Wojczynski MK	2013-07-19	BMC Med Genet	Genetics of coronary artery calcification among African Americans, a meta-analysis.	Coronary artery calcification	5,823 African American individuals	9,992 European ancestry individuals	8q24.22	KCNQ3	rs978152-C	0.25	8E-6	(AA)	0.19	[0.11-0.27] unit increase	Affymetrix, Illumina [up to 2727966] (imputed)	N
1602	chr8	133370726	133370727	rs79075547	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	8q24.22	KCNQ3	rs79075547-A	0.0503	2E-6		0.0867	[0.051-0.122] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1602	chr8	133411606	133411607	rs2673604	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-8 levels	3,526 Finnish ancestry individuals	NA	8q24.22	NR	rs2673604-C		7E-7		0.1266	[0.077-0.177] SD units increase	NR [10700000] (imputed)	N
1603	chr8	133436941	133436942	rs2597327	26112879	Rudkowska I	2015-06-20	J Nutrigenet Nutrigenomics	Interaction between Common Genetic Variants and Total Fat Intake on Low-Density Lipoprotein Peak Particle Diameter: A Genome-Wide Association Study.	LDL peak particle diameter (total fat intake interaction)	541 European ancestry individuals	NA	8q24.22	KCNQ3	rs2597327-T	0.8	1E-6		0.04	[0.02-0.06] unit decrease	Illumina [1632371] (imputed)	N
1603	chr8	133465497	133465498	rs111248619	31324766	Adeyemo AA	2019-07-19	Nat Commun	ZRANB3 is an African-specific type 2 diabetes locus associated with beta-cell mass and insulin response.	Type 2 diabetes	2,342 Sub-Saharan African ancestry cases, 2,889 Sub-Saharan African ancestry controls, 8,599 African American individuals	NA	8q24.22	KCNQ3	rs111248619-?	NR	3E-8		5.559	NR z score increase	Affymetrix, Illumina [~ 18000000] (imputed)	N
1603	chr8	133466892	133466893	rs3857927	33527407	Truong T	2021-02-02	Int J Cancer	Multiethnic genome-wide association study of differentiated thyroid cancer in the EPITHYR consortium.	Differentiated thyroid cancer	1,554 European ancestry cases, 1,973 European ancestry controls, 301 Oceanian ancestry cases, 348 Oceanian ancestry controls	NA	8q24.22	NR	rs3857927-T	0.06	1E-6				Illumina [6479975] (imputed)	N
1604	chr8	133629144	133629145	rs11984462	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	8q24.22	NR	rs11984462-?	NR	3E-30				Affymetrix [NR]	N
1604	chr8	133633828	133633829	rs17605455	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	8q24.22	Intergenic	rs17605455-T	0.8737	2E-8	(MTAG)	0.0195	[0.013-0.026] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1605	chr8	133702101	133702102	rs10956675	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	8q24.22	NR	rs10956675-A	0.491	2E-12		0.00756982	[0.0055-0.0097] unit decrease	NR [9732723] (imputed)	N
1605	chr8	133708896	133708897	rs10956677	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	8q24.22	NR	rs10956677-A	0.489	8E-12		0.0100011	[0.0071-0.0129] unit increase	NR [9732723] (imputed)	N
1605	chr8	133732855	133732856	rs74462621	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	8q24.22		rs74462621-T	0.1357	1E-9		0.0125	[0.0086-0.0164] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1605	chr8	133732855	133732856	rs74462621	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	8q24.22	Intergenic	rs74462621-T	0.1357	2E-11	(MTAG)	0.0128	[0.0091-0.0165] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1605	chr8	133758577	133758578	rs145103289	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	8q24.22		rs145103289-C	0.01457	2E-8		0.0512073	[0.033-0.069] unit increase	Illumina [13479295] (imputed)	N
1605	chr8	133769624	133769625	rs11778229	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	8q24.22		rs11778229-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1605	chr8	133771634	133771635	rs118039499	32769997	Zhou W	2020-08-07	Nat Commun	GWAS of thyroid stimulating hormone highlights pleiotropic effects and inverse association with thyroid cancer.	Thyroid stimulating hormone levels	119,715 European ancestry individuals	NA	8q24.22	TMEM71	rs118039499-C	0.022645977153774	6E-27		0.1812	[0.15-0.21] SD decrease	Illumina [22400000] (imputed)	N
1605	chr8	133771634	133771635	rs118039499	30367059	Teumer A	2018-10-26	Nat Commun	Genome-wide analyses identify a role for SLC17A4 and AADAT in thyroid hormone regulation.	Thyroid stimulating hormone levels	54,288 European ancestry individuals	up to 22,383 European ancestry individuals	8q24.22	TG	rs118039499-A	0.98	3E-21		0.185	[0.15-0.22] unit increase	Affymetrix, Illumina [8048941] (imputed)	N
1605	chr8	133771634	133771635	rs118039499	30367059	Teumer A	2018-10-26	Nat Commun	Genome-wide analyses identify a role for SLC17A4 and AADAT in thyroid hormone regulation.	Hyperthyroidism	1,840 European ancestry cases, 49,983 European ancestry controls	NA	8q24.22	TG	rs118039499-A	0.97	2E-12		0.185	[0.15-0.22] unit increase	Affymetrix, Illumina [5965951] (imputed)	N
1605	chr8	133779047	133779048	rs2433050	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	8q24.22		rs2433050-T	0.545	5E-10		0.008	[0.006-0.01] unit increase	NR [NR] (imputed)	N
1605	chr8	133787971	133787972	rs35766765	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	8q24.22	PHF20L1	rs35766765-G	0.092	3E-6		0.091	[0.054-0.128] unit decrease	Affymetrix, Illumina [7374092] (imputed)	N
1605	chr8	133792739	133792740	rs6471099	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	8q24.22	Intergenic	rs6471099-A	0.6793	9E-11	(MTAG)	0.0115	[0.008-0.015] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1605	chr8	133812752	133812752	rs35464031	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	8q24.22	PHF20L1	rs35464031-AG	0.318276	4E-9		0.01410353	[0.0094-0.0188] unit increase	Affymetrix [93095623] (imputed)	N
1605	chr8	133824203	133824204	rs78211770	31752434	Costa-Urrutia P	2019-11-19	Genes (Basel)	Genome-Wide Association Study of Body Mass Index and Body Fat in Mexican-Mestizo Children.	Body fat percentage	828 Mexican-Mestizo ancestry children	NA	8q24.22	PHF20L1	rs78211770-G	0.05	8E-9		0.2	NR unit increase	Affymetrix [~ 2500000] (imputed)	N
1606	chr8	133848531	133848532	rs117764941	32769997	Zhou W	2020-08-07	Nat Commun	GWAS of thyroid stimulating hormone highlights pleiotropic effects and inverse association with thyroid cancer.	Thyroid stimulating hormone levels	119,715 European ancestry individuals	NA	8q24.22	PHF20L1	rs117764941-A	0.0178143170072918	8E-22		0.2567	[0.2-0.31] SD decrease	Illumina [22400000] (imputed)	N
1606	chr8	133849654	133849655	rs75143612	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Goiter	2,711 European ancestry cases, 456,942 European ancestry controls, 1,127 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	8q24.22		rs75143612-C	NR	8E-10		0.5803	[0.4-0.77] unit increase	Affymetrix, Illumina [25841617] (imputed)	N
1606	chr8	133862986	133862987	rs4736612	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	8q24.22	NR	rs4736612-G	0.4152	1E-10		0.012149	[0.0085-0.0158] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1606	chr8	133863340	133863341	rs72725197	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Tumor necrosis factor alpha levels	3,454 Finnish ancestry individuals	NA	8q24.22	NR	rs72725197-C		5E-6		0.7364	[0.42-1.05] SD units increase	NR [10700000] (imputed)	N
1606	chr8	133870431	133870432	rs2467992	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	8q24.22		rs2467992-C	0.574903	5E-11		0.014681326	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
1606	chr8	133894853	133894854	rs121912648	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Hypothyroidism	17,558 European ancestry cases, 117,083 European ancestry controls	NA	8q24.22	TG	rs121912648-?	NR	7E-9		3.66	[2.44-5.56]	Illumina [13676411] (imputed)	N
1606	chr8	133899574	133899575	rs2069548	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8q24.22	PHF20L1	rs2069548-?	NR	9E-6	(TAG 52:3)	0.5934716	[0.33-0.85] unit increase	Affymetrix [at least 2500000] (imputed)	N
1606	chr8	133899574	133899575	rs2069548	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8q24.22	PHF20L1	rs2069548-?	NR	3E-6	(TAG 52:5)	0.61766696	[0.36-0.87] unit increase	Affymetrix [at least 2500000] (imputed)	N
1606	chr8	133906783	133906784	rs853316	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	8q24.22		rs853316-?	NR	3E-11				NR [~ 8900000] (imputed)	N
1606	chr8	133916798	133916799	rs80018415	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	8q24.22	NR	rs80018415-?	NR	8E-7	(Latino)	0.6193	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1606	chr8	133918527	133918528	rs853320	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	8q24.22	TG	rs853320-G	0.379935	1E-13		0.06942532	[0.051-0.088] unit increase	Affymetrix [7288503] (imputed)	N
1606	chr8	133918768	133918769	rs1810396	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	8q24.22		rs1810396-?	NR	4E-16				NR [~ 8900000] (imputed)	N
1606	chr8	133920517	133920518	rs2069556	32581359	Saevarsdottir S	2020-06-24	Nature	FLT3 stop mutation increases FLT3 ligand level and risk of autoimmune thyroid disease.	Autoimmune thyroid disease	30,234 European ancestry cases, 724,172 European ancestry controls	NA	8q24.22	TG	rs2069556-A	0.393	1E-12		1.07	[NR]	Affymetrix, Illumina [42900000] (imputed)	N
1606	chr8	133929916	133929917	rs853308	22561518	Jin Y	2012-05-06	Nat Genet	Genome-wide association analyses identify 13 new susceptibility loci for generalized vitiligo.	Vitiligo	418 European ancestry cases, 2,810 European ancestry controls	1,377 European ancestry cases, 1,284 European ancestry controls	8q24.22	SLA	rs853308-G	0.48	2E-8		1.2	[NR]	Illumina [495821]	N
1606	chr8	133931054	133931055	rs2687812	27723757	Jin Y	2016-11-01	Nat Genet	Genome-wide association studies of autoimmune vitiligo identify 23 new risk loci and highlight key pathways and regulatory variants.	Vitiligo	2,853 European ancestry cases and 37,405 European ancestry controls	1,827 European ancestry cases and 2,181 European ancestry controls	8q24.22	WISP1, TG, SLA	rs2687812-A	0.4775	2E-13		1.194	[1.14-1.25]	Illumina [8966411] (imputed)	N
1606	chr8	133931182	133931183	rs853305	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	8q24.22		rs853305-C	NR	6E-16		0.0754	[0.057-0.094] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1606	chr8	133931182	133931183	rs853305	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hypothyroidism	30,155 European ancestry cases, 379,986 European ancestry controls, 1,114 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	8q24.22		rs853305-C	NR	4E-13		0.0802	[0.058-0.102] unit decrease	Affymetrix, Illumina [25801083] (imputed)	N
1606	chr8	133938621	133938622	rs865488	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Autoimmune traits	approximately 459,000 European ancestry individuals	NA	8q24.22		rs865488-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1607	chr8	133966903	133966904	rs2140297	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8q24.22	TG	rs2140297-?	NR	8E-6	(3-hydroxyanthranilic acid)	0.25133663	[0.14-0.36] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1607	chr8	133990129	133990130	rs79365426	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		TG	rs79365426-?	NR	1E-9	(female)	0.940426	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1607	chr8	134054229	134054230	rs2741190	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	8q24.22	SLA, TG	rs2741190-C	NR	7E-6		1.0531	NR	Affymetrix, Illumina [8278136] (imputed)	N
1607	chr8	134068368	134068369	rs2702968	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	8q24.22	TG, SLA	rs2702968-T	0.506456	8E-11		0.014451571	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
1607	chr8	134071832	134071833	rs2741200	28512992	Joo YB	2017-05-16	Int J Rheum Dis	Association of CD8+ T-cells with bone erosion in patients with rheumatoid arthritis.	Bone erosion in rheumatoid arthritis	385 Korean ancestry cases, 326 Korean ancestry controls	NA	8q24.22	SLA, TG	rs2741200-?	NR	4E-6		2.0833335	[1.54-2.86]	Illumina [439289]	N
1607	chr8	134071832	134071833	rs2741200	22832960	Service SK	2012-05-15	Transl Psychiatry	A genome-wide meta-analysis of association studies of Cloninger's Temperament Scales.	Temperament	Up to 12,433 European ancestry individuals	NA	8q24.22	SLA, TG	rs2741200-T	0.671	5E-6	(Harm avoidance)	0.32	unit increase	Affymetrix, Illumina [1252222] (imputed)	N
1607	chr8	134080111	134080112	rs139500482	28030426	Mahmoudpour SH	2017-03-27	Pharmacogenet Genomics	Meta-analysis of genome-wide association studies on the intolerance of angiotensin-converting enzyme inhibitors.	Angiotensin-converting enzyme inhibitor intolerance	972 European ancestry intolerant individuals, 4,189 European ancestry tolerant individuals	NA	8q24.22	TG	rs139500482-?	0.5909800000000001	7E-6		1.3031371	[1.16-1.46]	Affymetrix, Illumina [NR] (imputed)	N
1608	chr8	134086864	134086865	rs2739156	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein WISP1	5,368 Icelandic ancestry individuals	NA	8q24.22		rs2739156-A	0.2814	3E-153		0.532662	[0.49-0.57] unit decrease	Illumina [7506463] (imputed)	N
1608	chr8	134086864	134086865	rs2739156	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	8q24.22	NR	rs2739156-A	0.261427	2E-10		0.013218	[0.0091-0.0173] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1608	chr8	134086864	134086865	rs2739156	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	8q24.22	NR	rs2739156-A	0.252	7E-43	(WNT1-inducible-signaling pathway protein 1, WISP1.13692.154.3)	0.38	[0.32-0.44] unit decrease	Affymetrix [10572788] (imputed)	N
1608	chr8	134087037	134087038	rs2739157	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q24.22	NR	rs2739157-A	0.330121	2E-11				Affymetrix, Illumina [24588908] (imputed)	N
1608	chr8	134089675	134089676	rs7845804	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	8q24.22		rs7845804-C	0.24	8E-9		5.76	z score increase	Affymetrix [9061022] (imputed)	N
1608	chr8	134089675	134089676	rs7845804	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	8q24.22	NR	rs7845804-C	0.2476	2E-8				NR [9056863] (imputed)	N
1608	chr8	134103952	134103953	rs71526274	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	8q24.22		rs71526274-?	NR	5E-11				NR [~ 8900000] (imputed)	N
1608	chr8	134106046	134106047	rs17703832	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	8q24.22	NR	rs17703832-A	0.4776	1E-17				NR [9056863] (imputed)	N
1608	chr8	134108452	134108453	rs2069568	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	8q24.22	TG	rs2069568-T	0.475016	1E-9		0.013521705	[0.0092-0.0179] unit increase	Affymetrix [93095623] (imputed)	N
1608	chr8	134115736	134115737	rs2979025	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	8q24.22		rs2979025-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1608	chr8	134124620	134124621	rs11784362	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein WISP1	5,368 Icelandic ancestry individuals	NA	8q24.22		rs11784362-T	0.2206	1E-171		0.607706	[0.57-0.65] unit increase	Illumina [7506463] (imputed)	N
1608	chr8	134132509	134132510	rs11786982	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	8q24.22	NR	rs11786982-A	0.219	3E-66	(WNT1-inducible-signaling pathway protein 1, WISP1.13692.154.3)	0.5	[0.44-0.56] unit increase	Affymetrix [10572788] (imputed)	N
1608	chr8	134142626	134142627	rs57332878	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	8q24.22		rs57332878-C	0.26	3E-17		8.47	z score increase	Affymetrix [9061022] (imputed)	N
1608	chr8	134145511	134145512	rs2294025	23612905	Zhao SX	2013-04-29	Hum Mol Genet	Robust evidence for five new Graves' disease risk loci from a staged genome-wide association analysis.	Graves' disease	1,442 Han Chinese ancestry cases, 1,468 Han Chinese ancestry controls	7,891 Han Chinese ancestry cases, 8,351 Han Chinese ancestry controls	8q24.22	SLA, WISP1, TG	rs2294025-T	0.19	8E-9		1.16	[1.10-1.22]	Illumina [8019905] (imputed)	N
1608	chr8	134146048	134146049	rs17705891	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	8q24.22		rs17705891-C	0.26	2E-29		11.28	z score increase	Affymetrix [9061022] (imputed)	N
1608	chr8	134167180	134167181	rs76880201	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	8q24.22	TG, SLA	rs76880201-?		4E-11				NR [7428630] (imputed)	N
1608	chr8	134196848	134196849	rs4527850	23300278	Saxena R	2013-01-08	Diabetes	Genome-wide association study identifies a novel locus contributing to type 2 diabetes susceptibility in Sikhs of Punjabi origin from India.	Type 2 diabetes	842 Punjabi Sikh ancestry cases, 774 Punjabi Sikh ancestry controls	up to 2,512 Punjabi Sikh ancestry cases and 3,201 Punjabi Sikh ancestry controls, up to 16,128 South Asian ancestry cases and 23,846 South Asian ancestry controls, up to 16,746 East Asian ancestry cases and 16,961 East Asian ancestry controls, up to 8,130 European ancestry cases and 38,987 European ancestry controls	8q24.22	WISP1	rs4527850-T	0.75	2E-6	(Punjabi Sikhs)	1.23	[1.13 - 1.34]	Illumina [1232008] (imputed)	N
1608	chr8	134197536	134197537	rs35472615	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	8q24.22	WISP1	rs35472615-A	0.274	2E-84	(WNT1-inducible-signaling pathway protein 1, WISP1.13692.154.3)	0.51	[0.45-0.57] unit increase	Affymetrix [10572788] (imputed)	N
1608	chr8	134202941	134202942	rs2013158	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	8q24.22	WISP1	rs2013158-C	0.73828125	1E-163	(WISP1, 13692_154_3)	0.7291848	[0.68-0.78] unit decrease	Illumina [> 1000000] (imputed)	N
1608	chr8	134204035	134204036	rs55884058	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein WISP1	5,368 Icelandic ancestry individuals	NA	8q24.22		rs55884058-C	0.3787	6E-287		0.644304	[0.61-0.68] unit decrease	Illumina [7506463] (imputed)	N
1608	chr8	134205712	134205713	rs3739262	27236921	Rautanen A	2016-06-02	Am J Hum Genet	Polymorphism in a lincRNA Associates with a Doubled Risk of Pneumococcal Bacteremia in Kenyan Children.	Pneumococcal bacteremia	429 African ancestry cases, 2,677 African ancestry controls	113  African ancestry cases, 1,336 African ancestry controls	8q24.22	WISP1	rs3739262-?	NR	5E-6		1.53	[NR]	Affymetrix [up to 10996499] (imputed)	N
1608	chr8	134206278	134206279	rs16893344	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	8q24.22	NR	rs16893344-T	0.364	5E-81	(WNT1-inducible-signaling pathway protein 1, WISP1.13692.154.3)	0.49	[0.43-0.55] unit decrease	Affymetrix [10572788] (imputed)	N
1608	chr8	134210212	134210213	rs13281186	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	8q24.22		rs13281186-?	NR	1E-11				NR [~ 8900000] (imputed)	N
1608	chr8	134211525	134211526	rs2929986	28881265	Sobalska-Kwapis M	2017-09-01	Eur J Obstet Gynecol Reprod Biol	New variants near RHOJ and C2, HLA-DRA region and susceptibility to endometriosis in the Polish population-The genome-wide association study.	Endometriosis	171 European ancestry cases, 2,934 European ancestry controls	NA	8q24.22	NR	rs2929986-T	0.4485	4E-6		1.67	[1.34-2.083]	Illumina [274400]	N
1608	chr8	134212651	134212652	rs13250295	32581359	Saevarsdottir S	2020-06-24	Nature	FLT3 stop mutation increases FLT3 ligand level and risk of autoimmune thyroid disease.	Autoimmune thyroid disease	30,234 European ancestry cases, 724,172 European ancestry controls	NA	8q24.22	WISP	rs13250295-C	0.696	8E-12		1.0638298	[NR]	Affymetrix, Illumina [42900000] (imputed)	N
1608	chr8	134214203	134214204	rs7005834	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	8q24.22	WISP1	rs7005834-T	0.307655	1E-11		0.066507466	[0.047-0.086] unit decrease	Affymetrix [7288503] (imputed)	N
1608	chr8	134214203	134214204	rs7005834	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Autoimmune traits	approximately 459,000 European ancestry individuals	NA	8q24.22		rs7005834-?	NR	2E-15				NR [~ 8900000] (imputed)	N
1608	chr8	134216918	134216919	rs143261612	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		WISP1	rs143261612-?	NR	5E-10	(male)	2.15123	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1609	chr8	134250429	134250430	rs1049694	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	8q24.22		rs1049694-T	NR	1E-8		0.0135	[0.0088-0.0182] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1609	chr8	134270547	134270548	rs2272651	23726511	Xie P	2013-05-28	Biol Psychiatry	Genome-wide association study identifies new susceptibility loci for posttraumatic stress disorder.	Post-traumatic stress disorder (asjusted for relatedness)	up to 308 European ancestry cases, up to 1,538 European ancestry controls, up to 456 African American cases, up to 2,936 African American controls	NA	8q24.22	NDRG1	rs2272651-?	NR	3E-6	(Whole cohort; EA)			Illumina [up to 871502]	N
1609	chr8	134274225	134274226	rs2233324	32989287	Cuellar-Partida G	2020-09-28	Nat Hum Behav	Genome-wide association study identifies 48 common genetic variants associated with handedness.	Left-handedness	1,766,671 European ancestry individuals	NA	8q24.22	NDRG1	rs2233324-C	0.1618	2E-14		0.9598033	[NR]	Illumina [12493444] (imputed)	N
1609	chr8	134298503	134298504	rs16904882	29523850	Gilchrist JJ	2018-03-09	Nat Commun	Risk of nontyphoidal Salmonella bacteraemia in African children is modified by STAT4.	Nontyphoidal Salmonella bacteraemia	180 Kenyan ancestry cases, 2,677 Kenyan ancestry controls	171 Sub-Saharan African ancestry cases, 563 Sub-Saharan African ancestry controls	8q24.22	NDRG1	rs16904882-?	NR	2E-7	(additive model)	2.08	[1.58-2.74]	Affymetrix [at least 4669480] (imputed)	N
1609	chr8	134331258	134331259	rs7814497	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	8q24.22		rs7814497-C	NR	4E-8		0.0133	[0.0086-0.018] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
1609	chr8	134332959	134332960	rs10283362	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	8q24.22	NDRG1	rs10283362-C	0.8607	2E-8		5.609	NR z score decrease	Illumina [26237160] (imputed)	N
1609	chr8	134335351	134335352	rs11993225	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glutamine levels	114,751 European ancestry individuals	NA	8q24.22		rs11993225-A	0.730098	2E-8		0.0259672	[0.017-0.035] unit decrease	NR [11722792] (imputed)	N
1610	chr8	134350105	134350106	rs4736655	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	8q24.22	LOC392271, FAM10A6	rs4736655-A	0.001	1E-6		34.08	[3.52-329.69]	Illumina [1556551]	N
1610	chr8	134406601	134406602	rs7819592	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mode of anisotropy)	17,706 European ancestry individuals	NA	8q24.22	NR	rs7819592-?		4E-8	(Average across all tracts)			NR [8955960] (imputed)	N
1610	chr8	134427292	134427293	rs60464499	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8q24.22	NR	rs60464499-G	0.01742	3E-8	(SBDS)	0.05595	NR unit increase	Illumina [1671387] (imputed)	N
1610	chr8	134461850	134461851	rs10106540	23903073	Kim HN	2013-08-01	J Hum Genet	Genome-wide association study of the five-factor model of personality in young Korean women.	Personality dimensions	1,089 Korean ancestry females	2,090 Korean ancestry individuals	8q24.22	ST3GAL1	rs10106540-G		7E-7	(Neuroticism)	0.04	[-0.0188-0.0988] unit increase	Illumina [2053685] (imputed)	N
1610	chr8	134469991	134469992	rs13274052	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		ST3GAL1	rs13274052-?	NR	3E-8	(female)	0.424241	[NR] unit increase	Affymetrix [NR] (imputed)	N
1610	chr8	134470360	134470361	rs28687047	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SELPLG	5,356 Icelandic ancestry individuals	NA	8q24.22		rs28687047-A	0.2251	6E-13		0.160113	[0.12-0.2] unit decrease	Illumina [7506463] (imputed)	N
1610	chr8	134475076	134475077	rs2736871	24039173	McGrath LM	2013-09-13	Am J Med Genet B Neuropsychiatr Genet	Genetic predictors of risk and resilience in psychiatric disorders: a cross-disorder genome-wide association study of functional impairment in major depressive disorder, bipolar disorder, and schizophrenia.	Functional impairment in major depressive disorder, bipolar disorder and schizophrenia	2,246 European ancestry individuals	NA	8q24.22	ST3GAL1	rs2736871-?	NR	3E-6	(MCS)			Affymetrix [1633452] (imputed)	N
1611	chr8	134483694	134483695	rs9643297	26908436	Siiskonen SJ	2016-02-12	Cancer Epidemiol Biomarkers Prev	A Genome-Wide Association Study of Cutaneous Squamous Cell Carcinoma among European Descendants.	Squamous cell carcinoma	745 European ancestry cases, 12,805 European ancestry controls	531 European ancestry cases, 551 European ancestry controls	8q24.22	ST3GAL1	rs9643297-G	0.31	8E-6		1.32	[1.17-1.50]	Affymetrix [2392512] (imputed)	N
1611	chr8	134490161	134490162	rs7463447	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	8q24.22	ST3GAL1	rs7463447-G	0.4815625	1E-13	(ST3GAL1, 5657_28_3)	0.1847627	[0.14-0.23] unit decrease	Illumina [> 1000000] (imputed)	N
1611	chr8	134499911	134499912	rs4736679	33594131	Donati G	2021-02-16	Sci Rep	Evidence for specificity of polygenic contributions to attainment in English, maths and science during adolescence.	Academic attainment (science)	6,089 European ancestry adolescents	NA	8q24.22	NR	rs4736679-G	NR	5E-6		0.177	[0.1-0.25] unit increase	Illumina [6319684] (imputed)	N
1611	chr8	134503147	134503148	rs9643300	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ST3GAL1	5,352 Icelandic ancestry individuals	NA	8q24.22		rs9643300-C	0.4889	6E-24		0.185472	[0.15-0.22] unit increase	Illumina [7506463] (imputed)	N
1611	chr8	134503147	134503148	rs9643300	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	8q24.22	ST3GAL1	rs9643300-T	0.563	1E-25	(CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 1, ST3GAL1.5657.28.3)	0.26	[0.22-0.3] unit decrease	Affymetrix [10572788] (imputed)	N
1611	chr8	134503228	134503229	rs760327	30850646	Tziotzios C	2019-03-08	Nat Commun	Genome-wide association study in frontal fibrosing alopecia identifies four susceptibility loci including HLA-B*07:02.	Frontal fibrosing alopecia	1,016 European ancestry cases, 4,145 European ancestry controls		8q24.22	ST3GAL1	rs760327-G	0.39	2E-8		1.34	[1.21-1.49]	Illumina [~ 8000000] (imputed)	N
1611	chr8	134507903	134507904	rs1554968	33594131	Donati G	2021-02-16	Sci Rep	Evidence for specificity of polygenic contributions to attainment in English, maths and science during adolescence.	Academic attainment (science)	6,089 European ancestry adolescents	NA	8q24.22	NR	rs1554968-T	NR	6E-7		0.147	[0.09-0.204] unit increase	Illumina [6319684] (imputed)	N
1611	chr8	134516611	134516612	rs76749289	34620984	Skuladottir AT	2021-10-07	Commun Biol	A genome-wide meta-analysis uncovers six sequence variants conferring risk of vertigo.	Vertigo	48,072 European ancestry cases, 894,541 European ancestry controls	NA	8q24.22		rs76749289-A	NR	6E-6		1.06375		Affymetrix, Illumina [62056310] (imputed)	N
1611	chr8	134552330	134552331	rs62520290	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	8q24.22		rs62520290-A	NR	2E-10		0.0152	[0.01-0.02] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
1611	chr8	134555736	134555737	rs58504358	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	8q24.22	ST3GAL1	rs58504358-T	0.81	7E-10		6.16	z-score increase	Affymetrix [4314223] (imputed)	N
1611	chr8	134571617	134571618	rs2978062	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	8q24.22	NR	rs2978062-G	NR	4E-10		0.0202	[0.014-0.026] unit increase	Affymetrix [9000000] (imputed)	N
1611	chr8	134578346	134578347	rs6984151	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	8q24.22		rs6984151-T	NR	7E-9		0.0097	[0.0064-0.013] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1611	chr8	134609194	134609195	rs7830513	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	8q24.22		rs7830513-G	NR	2E-17		0.0161	[0.012-0.02] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1612	chr8	134615749	134615750	rs2945733	24002674	Ozel AB	2013-09-04	Hum Genet	Genome-wide association study and meta-analysis of intraocular pressure.	Intraocular pressure	2,847 European ancestry primary open angle glaucoma cases, 3,389 European ancestry controls	NA	8q24.22	ST3GAL1	rs2945733-A	0.13	4E-6		0.51	[0.098-0.922] mmHg increase	Illumina [466573]	N
1612	chr8	134616135	134616136	rs2978048	24503447	Nelson D	2014-02-06	Antivir Ther	Genome-wide association study to characterize serum bilirubin elevations in patients with HCV treated with GS-9256, an HCV NS3 serine protease inhibitor.	Response to protease inhibitor treatment in hepatitis c (peak serum total bilirubin levels)	176 European ancestry individuals	NA	8q24.22	ST3GAL1	rs2978048-?	NR	1E-6		0.25	[NR] unit increase	Illumina [4466593]	N
1612	chr8	134618966	134618967	rs6987355	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	8q24.22	intergenic	rs6987355-A	0.7991	2E-15		0.0188	[0.014-0.024] unit decrease	Affymetrix [18391927] (imputed)	N
1612	chr8	134618966	134618967	rs6987355	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	8q24.22		rs6987355-?	NR	8E-20				NR [~ 8900000] (imputed)	N
1612	chr8	134621663	134621664	rs10956712	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Corpus callosum central volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	8q24.22	NR	rs10956712-?		3E-6				Illumina [4322238] (imputed)	N
1612	chr8	134637070	134637071	rs142024481	33331911	Freidin MB	2020-12-17	Rheumatology (Oxford)	An association between chronic widespread pain and the gut microbiome.	Chronic widespread musculoskeletal pain	up to 531 European or unknown ancestry cases, up to 2,742 European or unknown ancestry controls	NA	8q24.22	RP11-629O1.2, SNORA40	rs142024481-G	0.061	7E-6		0.0948	[0.053-0.136] unit increase	NR [4841651] (imputed)	N
1612	chr8	134640087	134640088	rs2945731	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	8q24.22	NR	rs2945731-?	NR	2E-6	(AA)	1.2332	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1612	chr8	134640087	134640088	rs2945731	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	8q24.22	NR	rs2945731-?	NR	2E-8	(AA)	1.3036	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1612	chr8	134655418	134655419	rs189437718	30678657	Westphal S	2019-01-24	BMC Cardiovasc Disord	Genome-wide association study of myocardial infarction, atrial fibrillation, acute stroke, acute kidney injury and delirium after cardiac surgery - a sub-analysis of the RIPHeart-Study.	Postoperative acute renal failure after cardiac surgery	52 cases, 1,020 controls	NA	8q24.22	SNORA40	rs189437718-?	NR	4E-7	(adjusted for atrial fibrillation, delirium, myocardial infarction and stroke)	20.0	[6.67-100]	Illumina [9007469] (imputed)	N
1612	chr8	134668676	134668677	rs2860223	23382809	Xu C	2013-01-29	PLoS One	BCL9 and C9orf5 are associated with negative symptoms in schizophrenia: meta-analysis of two genome-wide association studies.	Schizophrenia (negative symptoms)	1,774 European ancestry cases, 2,726 European ancestry controls		8q24.22	ST3Gal1	rs2860223-C	0.35	2E-6		1.26	[NR]	Affymetrix [729454]	N
1612	chr8	134682133	134682134	rs13268859	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	8q24.22		rs13268859-?	NR	6E-11				Affymetrix [NR] (imputed)	N
1612	chr8	134735219	134735220	rs7843718	29082582	Almli LM	2017-10-30	Addict Biol	Problematic alcohol use associates with sodium channel and clathrin linker 1 (SCLT1) in trauma-exposed populations.	Problematic alcohol use in trauma-exposed individuals	1,036 African American individuals	828 European ancestry individuals, 108 African ancestry individuals, 282 Hispanic and Native American individuals, 170 other ancestry individuals, 6 Asian individuals	8q24.22	ST3GAL1	rs7843718-G	0.18	5E-6	(AA, initial)	1.86	[1.06-2.66] unit increase	Illumina [501278]	N
1613	chr8	134778341	134778342	rs74566133	23568457	Wade TD	2013-04-09	Int J Eat Disord	Genetic variants associated with disordered eating.	Eating disorders (purging via substances)	600 European ancestry female cases, 1,921 European ancestry female controls	NA	8q24.22	intergenic	rs74566133-C	0.969	7E-7		0.249	[0.15-0.35] unit decrease	Illumina [6150213] (imputed)	N
1614	chr8	134905737	134905738	rs16905012	30276832	Edwards AC	2018-10-01	Alcohol Clin Exp Res	Meta-Analysis of Genetic Influences on Initial Alcohol Sensitivity.	Initial alcohol sensitivity	6,039 European ancestry individuals, 892 African ancestry individuals, 408 American ancestry individuals	NA	8q24.22	RP11-157E21.1	rs16905012-?	NR	9E-6				Affymetrix, Illumina [15642250] (imputed)	N
1614	chr8	134938503	134938504	rs7820020	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8q24.22	ZFAT1	rs7820020-?	NR	9E-6	(TAG 52:2)	0.15191132	[0.085-0.219] unit increase	Affymetrix [at least 2500000] (imputed)	N
1614	chr8	134955850	134955851	rs2381691	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (basophil)	21,347 Hispanic or Latin American individuals	NA	8q24.22		rs2381691-A	0.1709	4E-8		0.0865	[0.056-0.117] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1614	chr8	134967407	134967408	rs117405208	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	8q24.22	intergenic	rs117405208-C	0.002	2E-6		15.23	[3.38-68.72]	Illumina [1556551]	N
1614	chr8	134974921	134974922	rs17745716	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Caudal middle frontal gyrus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	8q24.22	NR	rs17745716-?		3E-6				Illumina [4322238] (imputed)	N
1615	chr8	135055502	135055503	rs7815327	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	8q24.22	Intergenic	rs7815327-T	0.999	3E-6	(AA)	2.281	NR unit increase	Illumina [NR] (imputed)	N
1615	chr8	135073212	135073213	rs112466685	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	8q24.22	NR	rs112466685-?	NR	2E-8				Illumina [7760689] (imputed)	N
1615	chr8	135077156	135077157	rs7836140	34075027	Gonda X	2021-06-01	Transl Psychiatry	Genetic underpinnings of affective temperaments: a pilot GWAS investigation identifies a new genome-wide significant SNP for anxious temperament in ADGRB3 gene.	Depressive temperament	775 European ancestry individuals	NA	8q24.22		rs7836140-A	NR	8E-6		0.04273	unit increase	Illumina [2550710] (imputed)	N
1615	chr8	135113015	135113016	rs78745202	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or recurrent major depressive disorder x sex interaction (3df)	31,567 European ancestry schizophrenia cases,19,924 European ancestry bipolar disorder cases, 5,314 European ancestry recurrent major depressive disorder cases, 78,190 European ancestry controls, 1,836 East Asian ancestry schizophrenia cases, 3,383 East Asian ancestry controls	NA	8q24.22	NR	rs78745202-C	NR	3E-6				NR [NR] (imputed)	N
1615	chr8	135113015	135113016	rs78745202	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or recurrent major depressive disorder x sex interaction (3df)	31,567 European ancestry schizophrenia cases,19,924 European ancestry bipolar disorder cases, 5,314 European ancestry recurrent major depressive disorder cases, 78,190 European ancestry controls	NA	8q24.22	NR	rs78745202-C	NR	3E-6				NR [NR] (imputed)	N
1615	chr8	135115762	135115763	rs116984605	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or recurrent major depressive disorder x sex interaction (3df)	31,567 European ancestry schizophrenia cases,19,924 European ancestry bipolar disorder cases, 5,314 European ancestry recurrent major depressive disorder cases, 78,190 European ancestry controls, 1,836 East Asian ancestry schizophrenia cases, 3,383 East Asian ancestry controls	NA	8q24.22	NR	rs116984605-A	NR	2E-6				NR [NR] (imputed)	N
1615	chr8	135115762	135115763	rs116984605	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or recurrent major depressive disorder x sex interaction (3df)	31,567 European ancestry schizophrenia cases,19,924 European ancestry bipolar disorder cases, 5,314 European ancestry recurrent major depressive disorder cases, 78,190 European ancestry controls	NA	8q24.22	NR	rs116984605-A	NR	2E-6				NR [NR] (imputed)	N
1616	chr8	135229766	135229767	rs72731858	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Lean body mass	3,399 whole genome sequenced individuals, 11,801 European ancestry individuals	10,676 European ancestry individuals	8q24.22	RP11-513H8.1	rs72731858-T	0.011	3E-6		0.2819	[0.16-0.4] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1617	chr8	135269178	135269179	rs1867947	33223526	Hong S	2020-11-22	Transl Psychiatry	Genome-wide association study of Alzheimer's disease CSF biomarkers in the EMIF-AD Multimodal Biomarker Discovery dataset.	Central cerebrospinal fluid amyloid beta 42 to 40 ratio (abnormal vs normal)	418 European ancestry cases, 259 European ancestry controls	NA	8q24.22		rs1867947-C	0.1707	4E-6		0.465	[0.3352-0.6451]	Illumina [7778465] (imputed)	N
1617	chr8	135339791	135339792	rs111376517	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	8q24.22		rs111376517-?	NR	3E-11				NR [~ 8900000] (imputed)	N
1617	chr8	135394366	135394367	rs56871130	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8q24.22	NR	rs56871130-T	0.0122	3E-9	(CCDC58)	0.0146	NR unit increase	Illumina [1671387] (imputed)	N
1618	chr8	135413852	135413853	rs6471235	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	8q24.22	NR	rs6471235-?		5E-6	(TIMP1)	0.0733	[NR] unit increase	Illumina [NR]	N
1618	chr8	135427756	135427757	rs10448005	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	8q24.22	Intergenic	rs10448005-T	0.1228	3E-11	(MTAG)	0.0133	[0.0094-0.0172] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1618	chr8	135432139	135432140	rs7463659	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	8q24.22	Intergenic	rs7463659-?	NR	7E-6		1.344086	[NR]	Affymetrix [492217] (imputed)	N
1618	chr8	135440607	135440608	rs74545339	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	8q24.22		rs74545339-A	0.1142	9E-13		0.0158	[0.011-0.02] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1618	chr8	135440607	135440608	rs74545339	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	8q24.22	NR	rs74545339-?	NR	6E-6		0.0077942	[0.0044-0.0112] unit decrease	Affymetrix [805426] (imputed)	N
1618	chr8	135445252	135445253	rs13273819	29970928	Zhu Z	2018-07-03	Eur J Hum Genet	Multi-level genomic analyses suggest new genetic variants involved in human memory.	Short-term memory (visuospatial task)	1,623 Chinese ancestry individuals	2,790 Chinese ancestry individuals	8q24.22	ZFAT	rs13273819-?	0.43	4E-6		0.08	[0.021-0.139] unit increase	Illumina [830937]	N
1618	chr8	135490340	135490341	rs116877116	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Effector Memory CD4-CD8- T cell %CD4-CD8- T cell	3,427 Sardinian (founder/genetic isolate) ancestry individuals	NA	8q24.22		rs116877116-A	0.1007	3E-8		0.2343	[0.15-0.32] unit increase	Illumina [18349913] (imputed)	N
1618	chr8	135519846	135519847	rs2315834	28334935	Raffield LM	2017-05-15	Hum Mol Genet	Genome-wide association study of iron traits and relation to diabetes in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL): potential genomic intersection of iron and glucose regulation?	Iron status biomarkers (iron levels)	12,580 Hispanic/Latino individuals	NA	8q24.22	ZFAT	rs2315834-C	NR	4E-7		0.39	[0.24-0.54] unit decrease	Illumina [27700000] (imputed)	N
1619	chr8	135542083	135542084	rs1550582	25201988	Rietveld CA	2014-09-08	Proc Natl Acad Sci U S A	Common genetic variants associated with cognitive performance identified using the proxy-phenotype method.	Educational attainment	106,736 European ancestry individuals	NA	8q24.22	intergenic	rs1550582-A	0.262	7E-6		0.022	[NR] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1619	chr8	135551032	135551033	rs113928546	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	8q24.22	NR	rs113928546-?	NR	2E-8				Illumina [7760689] (imputed)	N
1619	chr8	135570673	135570674	rs17768250	29160301	Fabbri C	2017-11-21	Pharmacogenomics J	New insights into the pharmacogenomics of antidepressant response from the GENDEP and STAR*D studies: rare variant analysis and high-density imputation.	Response to antidepressants (symptom remission)	2,145 European ancestry individuals	NA	8q24.22	ZFAT, ZFAT-AS1	rs17768250-?	NR	7E-7		2.1933	NR	Affymetrix, Illumina [7062950] (imputed)	N
1619	chr8	135570673	135570674	rs17768250	29160301	Fabbri C	2017-11-21	Pharmacogenomics J	New insights into the pharmacogenomics of antidepressant response from the GENDEP and STAR*D studies: rare variant analysis and high-density imputation.	Response to SSRI (symptom remission)	1,828 European ancestry individuals	NA	8q24.22	ZFAT, ZFAT-AS1	rs17768250-?	NR	7E-7		2.3758	NR	Affymetrix, Illumina [7062950] (imputed)	N
1619	chr8	135578636	135578636	rs558657497	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	8q24.22	ZFAT	rs558657497-CAAAAAAAAAAAAA	0.5002	1E-35		0.0234	[0.02-0.027] unit decrease	Affymetrix [18391927] (imputed)	N
1619	chr8	135578636	135578636	rs558657497	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	8q24.22		rs558657497-?	NR	2E-9		0.0126142	[0.0085-0.0167] unit decrease	Affymetrix [20259828] (imputed)	N
1619	chr8	135584018	135584019	rs6998237	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	8q24.22	ZFAT	rs6998237-G	NR	1E-8		0.0175539	[0.012-0.024] unit increase	Affymetrix [323123] (imputed)	N
1619	chr8	135590509	135590510	rs4909296	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	8q24.22	ZFAT	rs4909296-T	0.4839	3E-8		0.00935643	[0.006-0.0127] unit decrease	Affymetrix [11880941] (imputed)	N
1619	chr8	135593724	135593725	rs6577655	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue/subcutaneous adipose tissue ratio	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	8q24.22	ZFAT1	rs6577655-T	0.33	5E-6	(overall)			Affymetrix, Illumina [2500000] (imputed)	N
1619	chr8	135598264	135598265	rs16905190	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	8q24.22		rs16905190-?	NR	4E-104				NR [~ 8900000] (imputed)	N
1619	chr8	135602725	135602728	rs374660188	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	8q24.22		rs374660188-T	NR	8E-11		0.1088	[0.076-0.142] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1619	chr8	135602725	135602728	rs374660188	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	8q24.22		rs374660188-T	NR	1E-9		0.0963	[0.065-0.127] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
1619	chr8	135611552	135611553	rs72719776	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	8q24.22	ZFAT, ZFAT-AS1	rs72719776-C	NR	4E-8		0.0200245	[0.013-0.027] unit decrease	Affymetrix [321016] (imputed)	N
1619	chr8	135611944	135611945	rs1036819	30153862	Maxwell TJ	2018-08-28	Alzheimers Res Ther	Genome-wide association study for variants that modulate relationships between cerebrospinal fluid amyloid-beta 42, tau, and p-tau levels.	Cerebrospinal fluid t-tau:AB1-42 ratio	3,146 European ancestry individuals	NA	8q24.22	LOC100129104, LOC286094	rs1036819-C	0.261	5E-9				Illumina [5088365] (imputed)	N
1619	chr8	135612744	135612745	rs894344	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	8q24.22	ZFAT, ZFAT-AS1	rs894344-G	NR	8E-12		0.0213657	[0.015-0.027] unit decrease	Affymetrix [323123] (imputed)	N
1619	chr8	135612744	135612745	rs894344	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Systolic blood pressure	140,882 European ancestry individuals	190,318 European ancestry individuals	8q24.22	ZFAT	rs894344-A	0.6	3E-8		0.258	[0.16-0.36] unit decrease	Affymetrix [~ 9800000] (imputed)	N
1619	chr8	135614552	135614553	rs112892337	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Systolic blood pressure	422,713 European ancestry individuals	NA	8q24.22		rs112892337-?	NR	3E-12		0.111535	[0.081-0.142] unit decrease	NR [9800000] (imputed)	N
1619	chr8	135614552	135614553	rs112892337	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	8q24.22	ZFAT	rs112892337-C	0.0044	1E-23		0.1413	[0.11-0.17] unit increase	Affymetrix [18391927] (imputed)	N
1619	chr8	135614552	135614553	rs112892337	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	244,730 European ancestry women	NA	8q24.22	ZFAT	rs112892337-C	0.004	2E-11		0.13	[0.093-0.167] unit increase	Affymetrix [18391927] (imputed)	N
1619	chr8	135614552	135614553	rs112892337	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	205,513 European ancestry men	NA	8q24.22	ZFAT	rs112892337-C	0.004	5E-14		0.16	[0.12-0.2] unit increase	Affymetrix [18391927] (imputed)	N
1619	chr8	135616736	135616737	rs7007820	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	8q24.22	ZFAT	rs7007820-A	0.592	4E-7	(EA, women)	0.0231	[0.014-0.032] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1619	chr8	135616736	135616737	rs7007820	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	8q24.22	ZFAT	rs7007820-A	0.592	1E-8	(EA)	0.0205	[0.013-0.028] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1619	chr8	135618821	135618822	rs12550577	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	8q24.22		rs12550577-?	NR	5E-15				NR [~ 8900000] (imputed)	N
1619	chr8	135619271	135619272	rs4909309	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	8q24.22	ZFAT	rs4909309-C	NR	3E-11		0.0190937	[0.013-0.025] unit decrease	Affymetrix [321016] (imputed)	N
1619	chr8	135622340	135622341	rs2315837	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	8q24.22	ZFAT	rs2315837-C	0.499535	7E-9		0.012943483	[0.0086-0.0173] unit decrease	Affymetrix [93095623] (imputed)	N
1619	chr8	135622850	135622851	rs75596750	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Height	458,235 European ancestry individuals	NA	8q24.22		rs75596750-?	NR	7E-23		0.26426	[0.21-0.32] unit increase	NR [9800000] (imputed)	N
1619	chr8	135627748	135627749	rs894348	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	8q24.22		rs894348-?	NR	1E-13				NR [~ 8900000] (imputed)	N
1619	chr8	135636963	135636964	rs11166629	24665060	Argos M	2014-03-24	J Med Genet	Genome-wide association study of smoking behaviours among Bangladeshi adults.	Smoking quantity	1,837 Bangladeshi ancestry males, 198 Bangladeshi ancestry females	NA	8q24.22	NR	rs11166629-?		3E-6				Illumina [1211988] (imputed)	N
1619	chr8	135637336	135637337	rs12680655	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	8q24.22	ZFAT	rs12680655-C	0.52	2E-7		0.023	[0.011-0.035] unit increase	Affymetrix, Illumina [2704730] (imputed)	N
1619	chr8	135637336	135637337	rs12680655	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	8q24.22	ZFAT	rs12680655-C	0.6	2E-14		0.028	[NR] unit increase	Affymetrix, Illumina [2834208] (imputed)	N
1619	chr8	135637691	135637692	rs4909323	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	8q24.22	ZFAT	rs4909323-G	0.60695	2E-9		0.0113191	[0.0076-0.015] unit decrease	NR [13737936] (imputed)	N
1619	chr8	135638631	135638632	rs733254	21998595	N'Diaye A	2011-10-06	PLoS Genet	Identification, replication, and fine-mapping of Loci associated with adult height in individuals of african ancestry.	Height	20,427 African ancestry individuals	Up to 16,436 African American individuals	8q24.22	ZFAT1	rs733254-A	0.27	2E-6		0.041	[0.023-0.059] unit decrease	Affymetrix, Illumina [3310998] (imputed)	N
1619	chr8	135649847	135649848	rs12541381	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	8q24.22		rs12541381-A	NR	9E-11		0.0138	[0.0097-0.0179] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1619	chr8	135649847	135649848	rs12541381	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	8q24.22	ZFAT	rs12541381-A	NR	6E-12		0.0241242	[0.017-0.031] unit decrease	Affymetrix [323123] (imputed)	N
1619	chr8	135649847	135649848	rs12541381	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	8q24.22	ZFAT	rs12541381-A	0.2575	3E-49		0.0319	[0.028-0.036] unit decrease	Affymetrix [18391927] (imputed)	N
1619	chr8	135649847	135649848	rs12541381	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	244,730 European ancestry women	NA	8q24.22	ZFAT	rs12541381-A	0.258	3E-32		0.03	[0.024-0.036] unit decrease	Affymetrix [18391927] (imputed)	N
1619	chr8	135649847	135649848	rs12541381	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	205,513 European ancestry men	NA	8q24.22	ZFAT	rs12541381-A	0.258	3E-19		0.03	[0.024-0.036] unit decrease	Affymetrix [18391927] (imputed)	N
1619	chr8	135650482	135650483	rs1036821	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	8q24.22		rs1036821-A	NR	7E-54		0.0209	[0.018-0.023] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1619	chr8	135650482	135650483	rs1036821	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	8q24.22	ZFAT	rs1036821-A	NR	2E-11		0.0224339	[0.016-0.029] unit decrease	Affymetrix [323123] (imputed)	N
1619	chr8	135650482	135650483	rs1036821	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	8q24.22	ZFAT	rs1036821-A	0.2954	4E-9		0.2143	[0.14-0.29] mmHg increase	Affymetrix [NR] (imputed)	N
1619	chr8	135650482	135650483	rs1036821	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	8q24.22	ZFAT	rs1036821-A	0.2957	2E-8		0.1536	[0.1-0.21] mmHg increase	Affymetrix [NR] (imputed)	N
1619	chr8	135650482	135650483	rs1036821	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	8q24.22	ZFAT	rs1036821-A	0.3	1E-30		0.037	[0.031-0.043] unit decrease	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
1619	chr8	135651615	135651616	rs4909338	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	8q24.22	ZFAT	rs4909338-T	0.509021	2E-9		0.01323606	[0.0089-0.0176] unit decrease	Affymetrix [93095623] (imputed)	N
1619	chr8	135652570	135652571	rs34074875	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	8q24.22		rs34074875-A	NR	6E-11		0.0206	[0.015-0.027] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
1619	chr8	135652570	135652571	rs34074875	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	8q24.22		rs34074875-A	NR	1E-12		0.0223	[0.016-0.028] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
1619	chr8	135652570	135652571	rs34074875	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	8q24.22	ZFAT	rs34074875-A	0.156826	4E-15		0.0251213	[0.02-0.031] unit increase	Affymetrix [93095623] (imputed)	N
1619	chr8	135652570	135652571	rs34074875	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	8q24.22	ZFAT	rs34074875-A	0.156831	7E-17		0.025431197	[0.019-0.031] unit increase	Affymetrix [93095623] (imputed)	N
1619	chr8	135652570	135652571	rs34074875	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	8q24.22		rs34074875-?	NR	4E-22				NR [~ 8900000] (imputed)	N
1619	chr8	135653534	135653535	rs6995599	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	8q24.22		rs6995599-T	NR	9E-22		0.0166	[0.013-0.02] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1619	chr8	135653534	135653535	rs6995599	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	8q24.22	NR	rs6995599-?	NR	6E-8	(male)	0.20463	[0.13-0.28] unit decrease	Affymetrix [7794483] (imputed)	N
1619	chr8	135653534	135653535	rs6995599	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	8q24.22	NR	rs6995599-?	NR	2E-14		0.18309	[0.14-0.23] unit decrease	Affymetrix [7794483] (imputed)	N
1619	chr8	135653534	135653535	rs6995599	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	8q24.22	NR	rs6995599-?	NR	1E-9	(female)	0.15921	[0.11-0.21] unit decrease	Affymetrix [7794483] (imputed)	N
1619	chr8	135654339	135654340	rs11166643	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	8q24.22	ZFAT	rs11166643-T	NR	1E-8		0.0162081	[0.011-0.022] unit decrease	Affymetrix [321016] (imputed)	N
1619	chr8	135654701	135654702	rs17699359	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	8q24.22	ZFAT	rs17699359-C	NR	8E-10		0.0191414	[0.013-0.025] unit decrease	Affymetrix [323123] (imputed)	N
1619	chr8	135654741	135654742	rs11995190	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	8q24.22	ZFAT	rs11995190-G	NR	3E-11		0.0190119	[0.013-0.025] unit decrease	Affymetrix [321016] (imputed)	N
1619	chr8	135657049	135657050	rs11166650	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	8q24.22		rs11166650-A	NR	2E-8		0.0149	[0.0096-0.0202] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
1619	chr8	135657150	135657151	rs55650389	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	8q24.22	ZFAT	rs55650389-T	NR	2E-9		0.0203305	[0.014-0.027] unit decrease	Affymetrix [319769] (imputed)	N
1619	chr8	135658570	135658571	rs72719796	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	8q24.22	ZFAT	rs72719796-G	0.15861	1E-14		0.023279663	[0.017-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
1619	chr8	135658570	135658571	rs72719796	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	8q24.22		rs72719796-?	NR	2E-13				NR [~ 8900000] (imputed)	N
1620	chr8	135661483	135661484	rs1583969	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	8q24.22	ZFAT	rs1583969-C	NR	6E-9		0.0177342	[0.012-0.024] unit decrease	Affymetrix [319769] (imputed)	N
1620	chr8	135664672	135664673	rs7000796	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	8q24.22		rs7000796-G	0.499411	6E-15		0.0156609	[0.012-0.02] unit decrease	Illumina [13479295] (imputed)	N
1620	chr8	135664672	135664673	rs7000796	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	8q24.22	ZFAT	rs7000796-?	NR	7E-16		0.022957034	[0.017-0.029] unit decrease	Illumina [27896057] (imputed)	N
1620	chr8	135669221	135669222	rs16905212	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	8q24.22	ZFAT	rs16905212-T	0.6915	5E-6	(EA,women)	0.0224	[0.013-0.032] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1620	chr8	135669221	135669222	rs16905212	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	8q24.22	ZFAT	rs16905212-T	0.6915	2E-8	(EA)	0.0212	[0.014-0.029] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1620	chr8	135671717	135671718	rs4909595	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	8q24.22	ZFAT	rs4909595-G	NR	1E-13		0.0237598	[0.017-0.03] unit decrease	Affymetrix [321016] (imputed)	N
1620	chr8	135673204	135673205	rs6981994	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Lung cancer	2,479 White British ancestry cases, 272,351 White British ancestry controls	NA	8q24.22		rs6981994-?	NR	4E-6		1.54664	[1.36-1.73]	NR [673172]	N
1620	chr8	135673919	135673920	rs6997600	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	8q24.22	NR	rs6997600-?	NR	5E-10				Affymetrix [~ 8270000] (imputed)	N
1620	chr8	135674603	135674604	rs13271002	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q24.22	NR	rs13271002-G	0.130007	7E-21				Affymetrix, Illumina [24246363] (imputed)	N
1620	chr8	135684637	135684638	rs71528371	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	8q24.22	NR	rs71528371-T	0.146819	8E-15		0.020325	[0.015-0.025] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1620	chr8	135684637	135684638	rs71528371	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	8q24.22	NR	rs71528371-T	0.146831	3E-22		0.024898	[0.02-0.03] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
1620	chr8	135684637	135684638	rs71528371	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q24.22	NR	rs71528371-T	0.121487	2E-21				Affymetrix, Illumina [20825802] (imputed)	N
1620	chr8	135684637	135684638	rs71528371	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	8q24.22	NR	rs71528371-T	0.146953	7E-24		0.027458	[0.022-0.033] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
1620	chr8	135697950	135697951	rs7829427	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	8q24.22		rs7829427-G	NR	2E-9		0.0107	[0.0072-0.0142] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
1620	chr8	135698273	135698274	rs7834111	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	8q24.22	ZFAT	rs7834111-C	NR	1E-13		0.0211979	[0.016-0.027] unit decrease	Affymetrix [319769] (imputed)	N
1620	chr8	135698273	135698274	rs7834111	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	8q24.22	ZFAT	rs7834111-C	NR	1E-13		0.0211321	[0.016-0.027] unit decrease	Affymetrix [319769] (imputed)	N
1620	chr8	135698273	135698274	rs7834111	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8q24.22	ZFAT	rs7834111-C	NR	3E-10		0.0180972	[0.012-0.024] unit decrease	Affymetrix [321114] (imputed)	N
1620	chr8	135698273	135698274	rs7834111	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	8q24.22	ZFAT	rs7834111-C	NR	4E-9		0.0169544	[0.011-0.023] unit decrease	Affymetrix [321169] (imputed)	N
1620	chr8	135698273	135698274	rs7834111	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	8q24.22	NR	rs7834111-?	NR	4E-11				Affymetrix [~ 8270000] (imputed)	N
1620	chr8	135698273	135698274	rs7834111	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	8q24.22	NR	rs7834111-T	0.5755	1E-13		0.0135	[0.01-0.017] unit increase	NR [~ 27400000] (imputed)	N
1620	chr8	135707981	135707982	rs67654984	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	8q24.22	ZFAT	rs67654984-A	0.159008	6E-9		0.017579276	[0.012-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1620	chr8	135708613	135708614	rs10505629	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	8q24.22		rs10505629-?	NR	1E-21				NR [~ 8900000] (imputed)	N
1620	chr8	135709467	135709468	rs67506289	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	8q24.22	ZFAT	rs67506289-T	NR	8E-9		0.0177291	[0.012-0.024] unit increase	Affymetrix [321169] (imputed)	N
1620	chr8	135710347	135710348	rs7821292	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	8q24.22		rs7821292-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1620	chr8	135710678	135710679	rs7821751	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	8q24.22	ZFAT	rs7821751-A	0.7369	3E-17		0.0181	[0.014-0.022] unit decrease	Affymetrix [18391927] (imputed)	N
1620	chr8	135714186	135714187	rs72609897	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	8q24.22	ZFAT	rs72609897-G	NR	1E-8		0.0205289	[0.013-0.028] unit increase	Affymetrix [319769] (imputed)	N
1620	chr8	135714186	135714187	rs72609897	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	8q24.22	ZFAT	rs72609897-G	NR	3E-8		0.0201736	[0.013-0.027] unit increase	Affymetrix [319769] (imputed)	N
1620	chr8	135714186	135714187	rs72609897	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	8q24.22	ZFAT	rs72609897-G	NR	1E-8		0.0205985	[0.014-0.028] unit decrease	Affymetrix [321016] (imputed)	N
1620	chr8	135722406	135722407	rs1806755	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	8q24.22	ZFAT	rs1806755-A	NR	5E-11		0.0199727	[0.014-0.026] unit increase	Affymetrix [319769] (imputed)	N
1620	chr8	135722406	135722407	rs1806755	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	8q24.22	ZFAT	rs1806755-A	NR	3E-10		0.0191009	[0.013-0.025] unit increase	Affymetrix [319769] (imputed)	N
1620	chr8	135726350	135726351	rs551424873	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	8q24.22	NR	rs551424873-G	NR	1E-9		0.0149	[0.01-0.0198] unit increase	Affymetrix [9000000] (imputed)	N
1620	chr8	135726360	135726361	rs34806943	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	8q24.22		rs34806943-G	NR	5E-9		0.0136	[0.0091-0.0181] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
1620	chr8	135731577	135731578	rs9969668	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q24.22	NR	rs9969668-A	0.132914	2E-10				Affymetrix, Illumina [19872809] (imputed)	N
1620	chr8	135731577	135731578	rs9969668	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	8q24.22	NR	rs9969668-A	0.154615	2E-11		0.018537	[0.013-0.024] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
1620	chr8	135731952	135731953	rs7818560	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	8q24.22	CTD-2342N23.3	rs7818560-C	0.154434	3E-11		0.020340048	[0.014-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1620	chr8	135742591	135742592	rs192718491	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	8q24.22	Intergenic	rs192718491-T	NR	7E-6		0.243689	[0.14-0.35] unit increase	Illumina [13519193] (imputed)	N
1620	chr8	135744755	135744756	rs4909631	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	8q24.22	CTD-2342N23.3	rs4909631-T	NR	1E-8		0.0189157	[0.012-0.025] unit decrease	Affymetrix [323123] (imputed)	N
1620	chr8	135747966	135747967	rs67012134	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	8q24.22		rs67012134-?	NR	3E-10				NR [~ 8900000] (imputed)	N
1620	chr8	135775545	135775546	rs4294149	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	8q24.22	NR	rs4294149-C	0.6027	2E-8		0.0217	[0.014-0.029] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1620	chr8	135789926	135789927	rs4386936	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q24.22	NR	rs4386936-T	0.704769	1E-12				Affymetrix, Illumina [24332387] (imputed)	N
1621	chr8	135812415	135812416	rs7460121	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	8q24.22	MIR30B	rs7460121-A	0.1	2E-8		1.07	[1.05-1.1]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1621	chr8	135812493	135812493	rs137957419	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	8q24.22	AC083843.3	rs137957419-A	0.7142	4E-13		0.0151	[0.011-0.019] unit increase	Affymetrix [18391927] (imputed)	N
1621	chr8	135834393	135834394	rs6997082	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	8q24.22		rs6997082-?	NR	4E-12				NR [~ 8900000] (imputed)	N
1621	chr8	135837058	135837059	rs7009854	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	8q24.22	NR	rs7009854-A	0.294029	2E-8		0.0397906	[0.025-0.054] unit decrease	Affymetrix [17914406] (imputed)	N
1621	chr8	135850897	135850898	rs7003550	26025128	Park HW	2015-05-27	J Allergy Clin Immunol	Genetic risk factors for decreased bone mineral accretion in children with asthma receiving multiple oral corticosteroid bursts.	Bone mineral accretion in asthma (oral corticosteroid dose interaction)	489 European ancestry children	NA	8q24.22	intergenic	rs7003550-?		1E-8				Illumina [NR]	N
1621	chr8	135869975	135869976	rs12541063	24001895	Kelly TN	2013-09-03	Hypertension	Genome-wide association study meta-analysis reveals transethnic replication of mean arterial and pulse pressure loci.	Blood pressure	22,275 East Asian ancestry individuals, 4,325 South East Asian ancestry individuals	28,783 East Asian ancestry individuals	8q24.22	MIR30D	rs12541063-A	0.39	3E-6	(PP)	0.81	[0.48-1.14] mm of mercury decrease	Affymetrix, Illumina [~ 2400000] (imputed)	N
1621	chr8	135879158	135879159	rs4909801	24277619	Quillen EE	2013-11-26	Am J Med Genet B Neuropsychiatr Genet	ALDH2 is associated to alcohol dependence and is the major genetic determinant of "daily maximum drinks" in a GWAS study of an isolated rural Chinese sample.	Response to alcohol consumption (flushing response)	108 Han Chinese ancestry cases, 190 Han Chinese ancestry controls	NA	8q24.22	intergenic	rs4909801-?		3E-6		0.534	unit increase	Illumina [247725]	N
1622	chr8	135955807	135955808	rs4132831	29478026	Shahin MH	2018-02-24	J Am Heart Assoc	Genome-Wide Association Approach Identified Novel Genetic Predictors of Heart Rate Response to ?-Blockers.	Heart rate response to beta blockers (atenolol monotherapy)	228 European American hypertensive individuals, 146 African American hypertensive individuals	NA	8q24.22	NR	rs4132831-G	0.66	5E-6	(EA)	2.44	[1.42-3.46] bpm increase	Illumina [at least 1100000] (imputed)	N
1622	chr8	135957333	135957334	rs7461108	29478026	Shahin MH	2018-02-24	J Am Heart Assoc	Genome-Wide Association Approach Identified Novel Genetic Predictors of Heart Rate Response to ?-Blockers.	Heart rate response to beta blockers (atenolol monotherapy)	228 European American hypertensive individuals, 146 African American hypertensive individuals	NA	8q24.22	NR	rs7461108-G	0.7	4E-7	(EA)	2.68	[1.68-3.68] bpm increase	Illumina [at least 1100000] (imputed)	N
1622	chr8	136001311	136001312	rs59888390	31260374	Pedergnana V	2019-07-01	J Interferon Cytokine Res	Impact of IFNL4 Genetic Variants on Sustained Virologic Response and Viremia in Hepatitis C Virus Genotype 3 Patients.	Response to direct-acting antiviral treatment in hepatitis C virus genotype 3	325 European, Asian and unknown ancestry responders, 84 European, Asian and unknown ancestry non-responders	NA	8q24.22	NR	rs59888390-?	NR	5E-7		3.846154	NR	Affymetrix [~ 18000000] (imputed)	N
1624	chr8	136215127	136215128	rs1480795	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	8q24.22	Intergenic	rs1480795-A	0.2981	3E-12	(MTAG)	0.0137	[0.0098-0.0176] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1624	chr8	136215127	136215128	rs1480795	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	8q24.22	Intergenic	rs1480795-G	0.7019	1E-11		0.0144	[0.01-0.019] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1624	chr8	136215127	136215128	rs1480795	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	8q24.22	Intergenic	rs1480795-A	0.2976	1E-11	(MTAG)	0.0123	[0.0088-0.0158] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1624	chr8	136220934	136220935	rs1564470	34616010	Quintanilha JCF	2021-10-06	Br J Cancer	Bevacizumab-induced hypertension and proteinuria: a genome-wide study of more than 1000 patients.	Bevacizumab-induced composite toxicity (either hypertension or proteinuria)	1,039 European ancestry individuals	NA	8q24.22	intergenic	rs1564470-?	0.32	5E-6		0.75	unit increase	Illumina [828141]	N
1624	chr8	136223701	136223702	rs1871729	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	8q24.22	ZFAT, KHDRBS3	rs1871729-G	0.3184	8E-9		1.0234712		Affymetrix [11880941] (imputed)	N
1624	chr8	136257354	136257355	rs138925568	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Spirochaetia abundance in stool	5,959 Finnish ancestry individuals	NA	8q24.22		rs138925568-C	0.0111223	3E-10		0.122623	[0.085-0.161] unit increase	Illumina [7980478] (imputed)	N
1624	chr8	136281135	136281136	rs4454313	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	8q24.22	NR	rs4454313-G	0.11	2E-6	(IFNGR1_of_monocytes)			Illumina [5084123] (imputed)	N
1625	chr8	136317596	136317597	rs115191294	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8q24.22	NR	rs115191294-A	0.0122	2E-8	(EIF2B1)	0.02114	NR unit increase	Illumina [1671387] (imputed)	N
1625	chr8	136382115	136382116	rs538845166	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	225,112 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	445,360 individuals	8q24.22	intergenic	rs538845166-G	0.001	1E-48		24.3973	[21.14-27.66] mmHg increase	Affymetrix [NR] (imputed)	N
1625	chr8	136427566	136427567	rs75045186	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8q24.23	NR	rs75045186-T	0.02439	6E-9	(CTH)	0.6386	NR unit increase	Illumina [1671387] (imputed)	N
1625	chr8	136427998	136427999	rs881972	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	8q24.23	NR	rs881972-?	NR	4E-29				Affymetrix [NR]	N
1627	chr8	136603127	136603128	rs7017297	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Aspartate aminotransferase levels in low alcohol consumption	8,716 individuals	NA	8q24.23	NR	rs7017297-?	NR	4E-6		0.0771	[0.045-0.109] unit increase	Illumina [~ 7800000] (imputed)	N
1628	chr8	136713136	136713137	rs4243849	20708005	Chalasani N	2010-08-10	Gastroenterology	Genome-wide association study identifies variants associated with histologic features of nonalcoholic Fatty liver disease.	Non-alcoholic fatty liver disease histology (other)	236 European ancestry cases	NA	8q24.23	intergenic	rs4243849-G	0.52	2E-6	(Steatosis)	0.14	[NR] unit increase	Illumina [324623]	N
1628	chr8	136797311	136797312	rs7001648	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	8q24.23	Intergenic	rs7001648-A	0.905	1E-10	(MTAG)	0.0196	[0.014-0.026] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1628	chr8	136809181	136809182	rs10104815	33106475	Li QS	2020-10-26	Transl Psychiatry	Genome-wide association studies of antidepressant class response and treatment-resistant depression.	Response to serotonin-norepinephrine reuptake inhibitors (responders vs non-responders)	4,030 European ancestry responders, 3,049 European ancestry non-responders	NA	8q24.23	NR	rs10104815-T	NR	5E-8		1.215	NR	Illumina [at least 560000] (imputed)	N
1628	chr8	136816432	136816433	rs58016561	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	8q24.23	Intergenic	rs58016561-G	0.9051	4E-11		0.0219	[0.015-0.028] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1629	chr8	136855513	136855514	rs118174020	34062886	Nazarian A	2021-05-01	Genes (Basel)	Genome-Wide Analysis of Sex Disparities in the Genetic Architecture of Lung and Colorectal Cancers.	Colorectal cancer	211 European ancestry female cases, 186 European ancestry male cases, 8,382 European ancestry female controls, 6,312 European ancestry male controls	NA	8q24.23	KHDRBS3	rs118174020-C	0.949	1E-6	(Female)	0.357	[0.24-0.48]	NR [up to 1668415] (imputed)	N
1629	chr8	136871738	136871739	rs12680546	17362836	Schymick JC	2007-02-20	Lancet Neurol	Genome-wide genotyping in amyotrophic lateral sclerosis and neurologically normal controls: first stage analysis and public release of data.	Amyotrophic lateral sclerosis	276 European ancestry cases, 271 European ancestry controls	NA	8q24.23	intergenic	rs12680546-?	NR	3E-6		1.67	[1.25-2.00]	Illumina [549062]	N
1630	chr8	136989203	136989204	rs16905439	22754043	Byrne EM	2012-07-01	Sleep	A genome-wide association study of caffeine-related sleep disturbance: confirmation of a role for a common variant in the adenosine receptor.	Insomnia (caffeine-induced)	2,402 European ancestry individuals from 1,470 families	NA	8q24.23	AC105008.1	rs16905439-?	0.99	9E-6		3.33	[1.96-5.88]	Illumina [2380486] (imputed)	N
1630	chr8	137033537	137033538	rs72721852	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8q24.23	NR	rs72721852-G	0.02091	2E-8	(CP)	0.1944	NR unit increase	Illumina [1671387] (imputed)	N
1630	chr8	137047839	137047840	rs1900812	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8q24.23	ZFAT1	rs1900812-?	NR	6E-6	(CE 20:4)	0.29344577	[0.17-0.42] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1630	chr8	137056546	137056547	rs35105490	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Cognitive traits (MTAG)	331,679 British ancestry individuals	NA	8q24.23		rs35105490-?	NR	1E-8				NR [7857346] (imputed)	N
1630	chr8	137077789	137077790	rs149577005	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		LINC02055	rs149577005-?	NR	6E-11	(female)	0.685013	[NR] unit increase	Affymetrix [NR] (imputed)	N
1630	chr8	137078324	137078325	rs11166628	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	8q24.23	ENSG00000253248	rs11166628-?	NR	3E-8		0.011256048	[0.0073-0.0152] unit increase	NR [7306098]	N
1630	chr8	137078324	137078325	rs11166628	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	8q24.23	NR	rs11166628-?	NR	1E-6		4.817	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1630	chr8	137079365	137079366	rs4909561	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	8q24.23	NR	rs4909561-T	0.441352	8E-10		0.04368709	[0.03-0.058] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1631	chr8	137156449	137156450	rs10505648	25574032	Lee H	2015-01-08	Hum Reprod	Genome-wide association study identified new susceptibility loci for polycystic ovary syndrome.	Polycystic ovary syndrome	976 Korean ancestry cases, 946 Korean ancestry controls	249 Korean ancestry cases, 778 Korean ancestry controls	8q24.23	KHDRBS3	rs10505648-A	0.906	5E-8		1.92	[NR]	Illumina [636870]	N
1631	chr8	137163143	137163144	rs9644474	31095341	Kerns SL	2019-05-16	J Natl Cancer Inst	Radiogenomics Consortium Genome-Wide Association Study Meta-analysis of Late Toxicity after Prostate Cancer Radiotherapy.	Toxicity response to radiotherapy in prostate cancer (rectal bleeding) (time to event)	3,379 European ancestry individuals	NA	8q24.23	NR	rs9644474-?	0.95	8E-8		2.15	[1.64-2.81]	Affymetrix, Illumina [~ 6000000] (imputed)	N
1631	chr8	137224800	137224801	rs143593851	31014085	Welsh P	2019-04-24	Circulation	Cardiac Troponin T and Troponin I in the General Population: Comparing and Contrasting their Genetic Determinants and Associations with Outcomes.	Cardiac troponin-I levels	14,579 European ancestry individuals	NA	8q24.23	Intergenic	rs143593851-A		9E-8		0.773	[NR] unit increase	Illumina [24111857] (imputed)	N
1632	chr8	137239461	137239462	rs72726129	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	8q24.23	NR	rs72726129-?	NR	2E-8				Illumina [7760689] (imputed)	N
1632	chr8	137270043	137270044	rs534784817	30070759	Olsson M	2018-08-02	J Thromb Haemost	Genome-wide analysis of genetic determinants of circulating factor VII activating protease (FSAP) activity.	Plasma factor VII activating protease levels	3,126 Swedish ancestry individuals	NA	8q24.23	Intergenic	rs534784817-?		2E-6		85.9	[51.01-120.79] unit increase	Illumina [~ 10000000] (imputed)	N
1633	chr8	137403097	137403098	rs73715005	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8q24.23	NR	rs73715005-G	0.01394	2E-10	(ANP32A)	0.08322	NR unit increase	Illumina [1671387] (imputed)	N
1633	chr8	137482635	137482636	rs148677062	28203683	Heit JA	2017-02-16	Thromb Haemost	Identification of unique venous thromboembolism-susceptibility variants in African-Americans.	Venous thromboembolism adjusted for sickle cell variant rs77121243-T	393 African American cases, 4,941 African American controls.	NR	8q24.23	KHDRBS3	rs148677062-C	0.0148	8E-6		3.106	[1.891-5.102]	Affymetrix, Illumina [14074516] (imputed)	N
1634	chr8	137545147	137545148	rs2581561	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8q24.23	FAM135B	rs2581561-?	NR	4E-6	(ribose 5 P; ribulose 5 P)	0.21034728	[0.12-0.3] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1635	chr8	137676549	137676550	rs117619771	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	8q24.23	NR	rs117619771-?	NR	2E-6		0.008002	[0.0047-0.0113] unit decrease	Affymetrix [805426] (imputed)	N
1636	chr8	137768891	137768892	rs16906293	20639394	Kang TW	2010-07-16	Hum Mol Genet	Genome-wide association of serum bilirubin levels in Korean population.	Bilirubin levels	8,841 Korean ancestry individuals	1,096 Korean ancestry individuals	8q24.23	intergenic	rs16906293-?	0.014	6E-6		0.087	[NR] bilirubin level increase	Affymetrix [1227049] (imputed)	N
1636	chr8	137811068	137811069	rs1841513	32439431	Simard M	2020-05-19	J Allergy Clin Immunol	Polygenic risk score for atopic dermatitis in the Canadian population.	Atopic dermatitis (moderate to severe)	222 South East Asian ancestry, East Asian ancestry, South Asian ancestry, African American or Afro-Caribbean, European ancestry, Greater Middle Eastern (Middle Eastern, North African or Persian) cases, 2,466 Greater Middle Eastern (Middle Eastern, North African or Persian), Hispanic or Latin American, NR moderate to severe atopic dermatitis cases, 2,466 South East Asian ancestry, East Asian ancestry, South Asian ancestry, African American or Afro-Caribbean, European ancestry, Greater Middle Eastern (Middle Eastern, North African or Persian) cases, 2,466 Greater Middle Eastern (Middle Eastern, North African or Persian), Hispanic or Latin American, NR controls without moderate to severe atopic dermatitis	NA	8q24.23		rs1841513-A	NR	2E-28	(additive)	1.171	[0.963-1.379] unit decrease	Illumina [5894709] (imputed)	N
1636	chr8	137832396	137832397	rs3907169	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Frontal pole volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	8q24.23	NR	rs3907169-?		3E-6				Illumina [4322238] (imputed)	N
1636	chr8	137850010	137850011	rs16906415	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	8q24.23	NR	rs16906415-G	0.107822580400891	6E-6	(IGP32)	0.2296	[0.13-0.33] unit decrease	Illumina [~ 2500000] (imputed)	N
1636	chr8	137850010	137850011	rs16906415	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	8q24.23	NR	rs16906415-G	0.107695718234507	3E-6	(IGP35)	0.235	[0.14-0.33] unit increase	Illumina [~ 2500000] (imputed)	N
1636	chr8	137862434	137862435	rs17597927	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure	35,269 European ancestry cases, 63,451 European ancestry controls	NA	8q24.23	NR	rs17597927-G	0.71079	8E-6		1.0638298	[1.04-1.09]	Affymetrix [7791636] (imputed)	N
1637	chr8	137933468	137933469	rs1909481	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Squamous cell lung carcinoma	7,426 European ancestry cases, 55,627 European ancestry controls	NA	8q24.23	KHDRBS3, LOC101927915	rs1909481-C	0.865513311	4E-6		1.1388079	[1.08-1.2]	Illumina [10439017] (imputed)	N
1637	chr8	137948280	137948281	rs114538165	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	8q24.23	Intergenic	rs114538165-G	NR	6E-6		0.206967	[0.12-0.3] unit decrease	Illumina [13520550] (imputed)	N
1638	chr8	138057069	138057070	rs7845288	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		LINC02055	rs7845288-?	NR	2E-10	(female)	3.59254	[NR] unit increase	Affymetrix [NR] (imputed)	N
1638	chr8	138060118	138060119	rs67017865	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Superior parietal cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	8q24.23	NR	rs67017865-?		8E-6				Illumina [4322238] (imputed)	N
1638	chr8	138097367	138097368	rs11781274	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	7,894 Sub-Saharan African ancestry individuals	NA	8q24.23		rs11781274-G	0.909194	2E-7		0.0173334	[0.011-0.024] unit decrease	Illumina [13900000] (imputed)	N
1638	chr8	138126529	138126530	rs72738348	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8q24.23	NR	rs72738348-C	0.0122	9E-9	(RBMX)	0.1283	NR unit increase	Illumina [1671387] (imputed)	N
1638	chr8	138136303	138136304	rs7831697	26301688	Li YR	2015-08-24	Nat Med	Meta-analysis of shared genetic architecture across ten pediatric autoimmune diseases.	Pediatric autoimmune diseases	97 European ancestry thyroiditis cases, 107 European ancestry ankylosing spondylitis cases, 100 European ancestry psoriasis cases, 173 European ancestry celiac disease cases, 254 European ancestry systemic lupus erythematosus cases, 308 European ancestry common variable inmunodeficiency cases, 865 European ancestry ulcerative colitis cases, 1,086 European ancestry Type 1 diabetes cases, 1,123  European ancestry juvenile idiopathic arthritis cases, 1,922  European ancestry Crohn's disease cases, 10,718 European ancestry controls	NA	8q24.23	intergenic	rs7831697-G	0.25	5E-7				Illumina [7347414] (imputed)	N
1639	chr8	138194868	138194869	rs2077233	24684796	Cox AJ	2014-03-11	Neurobiol Aging	Heritability and genetic association analysis of cognition in the Diabetes Heart Study.	Cognitive function	423 type 2 diabetes cases and 127 unaffected siblings from 257 families	NA	8q24.23	intergenic	rs2077233-A	0.176	7E-6	(3MSE)	2.3061	[1.31-3.30] unit decrease	Affymetrix [> 371951] (imputed)	N
1639	chr8	138201916	138201917	rs4909632	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8q24.23	COL22A1	rs4909632-?	NR	7E-6	(TAG 50:1)	0.18712416	[0.11-0.27] unit increase	Affymetrix [at least 2500000] (imputed)	N
1639	chr8	138209989	138209990	rs117495911	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	8q24.23	Intergenic	rs117495911-T	NR	2E-6		0.133023	[0.078-0.188] unit increase	Illumina [13520550] (imputed)	N
1639	chr8	138215227	138215228	rs16906845	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	8q24.23		rs16906845-A	NR	1E-8		0.0167	[0.011-0.022] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1639	chr8	138215227	138215228	rs16906845	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	8q24.23		rs16906845-A	NR	4E-8		0.0184	[0.012-0.025] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1639	chr8	138215227	138215228	rs16906845	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	8q24.23		rs16906845-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1639	chr8	138215227	138215228	rs16906845	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	8q24.23	NA	rs16906845-A	0.06	1E-11		0.0244	[0.017-0.031] unit decrease	NR [~ 27400000] (imputed)	N
1639	chr8	138215646	138215647	rs73712231	30796134	Soderholm M	2019-02-22	Neurology	Genome-wide association meta-analysis of functional outcome after ischemic stroke.	3-month functional outcome in ischaemic stroke (modified Rankin score)	3,830 European and unknown ancestry modified Rankin score 0-2 cases, 2,335 European and unknown ancestry modified Rankin score 3-6 cases	NA	8q24.23	intergenic	rs73712231-T	0.066	1E-6	(adjusted for severity)	1.6	[1.4-1.8]	Affymetrix, Illumina [~ 8500000] (imputed)	N
1639	chr8	138222729	138222730	rs35323955	32472697	Verma SS	2020-05-30	Clin Pharmacol Ther	Genome-wide association study of platelet reactivity and cardiovascular response in patients treated with clopidogrel: a study by the International Clopidogrel Pharmacogenomics Consortium (ICPC).	Cardiovascular death, myocardial infarction or stroke in response to clopidogrel treatment	72 European ancestry cases, 1,375 European ancestry controls	NA	8q24.23	FAM135B	rs35323955-C	0.542679	4E-6		2.2579808	NR	Illumina [5009928] (imputed)	N
1639	chr8	138239861	138239862	rs13282991	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,931 Sub-Saharan African ancestry males	NA	8q24.23		rs13282991-G	0.830959	9E-6		0.0161259	[0.0091-0.0231] unit decrease	Illumina [13900000] (imputed)	N
1639	chr8	138246220	138246221	rs6987191	31370031	Dou KX	2019-08-01	Aging (Albany NY)	Genome-wide association study identifies CBFA2T3 affecting the rate of CSF A?42 decline in non-demented elders.	Annualised percent change of cerebrospinal fluid AB1-42 levels	321 European ancestry individuals	NA	8q24.23	intergenic	rs6987191-C	0.131	7E-6		0.031	NR % decrease	Illumina [1040042]	N
1640	chr8	138304594	138304595	rs4370571	35232999	Garcia-Etxebarria K	2022-03-01	Sci Rep	Local genetic variation of inflammatory bowel disease in Basque population and its effect in risk prediction.	Ulcerative colitis	208 European ancestry cases, 935 European ancestry controls	NA	8q24.23		rs4370571-A	0.582	4E-6		0.6		Illumina [5409651] (imputed)	N
1640	chr8	138319385	138319386	rs73712257	31095341	Kerns SL	2019-05-16	J Natl Cancer Inst	Radiogenomics Consortium Genome-Wide Association Study Meta-analysis of Late Toxicity after Prostate Cancer Radiotherapy.	Toxicity response to radiotherapy in prostate cancer (rectal bleeding) (time to event)	3,379 European ancestry individuals	NA	8q24.23	NR	rs73712257-?	0.03	2E-7		4.72	[2.62-8.50]	Affymetrix, Illumina [~ 6000000] (imputed)	N
1640	chr8	138349190	138349191	rs4909363	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Systolic blood pressure (long-term average)	5,304 African American individuals, 13,137 European ancestry individuals, 1,317 Hispanic individuals, 1,439 admixed individuals, 703 Chinese ancestry individuals	6,500 African American individuals, 2,451 European ancestry individuals, 2,869 Hispanic individuals	8q24.23	NR	rs4909363-A	0.4123	4E-7		0.59	[0.36-0.82] mmHg increase	Affymetrix, Illumina [NR] (imputed)	N
1641	chr8	138469349	138469350	rs34346284	32844198	Dumitrescu L	2020-08-01	Brain	Genetic variants and functional pathways associated with resilience to Alzheimer's disease.	Combined resilience (covariance of educational attainment with residual cognitive resilience)	5,108 European ancestry individuals (unimpaired cognition, mild cognitive impairment or Alzheimer's disease)	NA	8q24.23	NR	rs34346284-?	0.1045	1E-6		0.057875	[0.034-0.081] unit decrease	Affymetrix, Illumina [4840740] (imputed)	N
1641	chr8	138504601	138504602	rs925648	32844198	Dumitrescu L	2020-08-01	Brain	Genetic variants and functional pathways associated with resilience to Alzheimer's disease.	Residual cognitive resilience	5,108 European ancestry individuals (unimpaired cognition, mild cognitive impairment or Alzheimer's disease)	NA	8q24.23	NR	rs925648-?	0.09818	8E-6		0.120219	[0.067-0.173] unit decrease	Affymetrix, Illumina [4840740] (imputed)	N
1642	chr8	138546063	138546064	rs11777857	30276832	Edwards AC	2018-10-01	Alcohol Clin Exp Res	Meta-Analysis of Genetic Influences on Initial Alcohol Sensitivity.	Initial alcohol sensitivity	6,039 European ancestry individuals, 892 African ancestry individuals, 408 American ancestry individuals	NA	8q24.23	ENSG00000254076	rs11777857-?	NR	3E-6				Affymetrix, Illumina [15642250] (imputed)	N
1642	chr8	138555255	138555256	rs2175877	31497858	Dumitrescu L	2019-09-01	Brain	Sex differences in the genetic predictors of Alzheimer's pathology.	Neuritic plaque	2,701 European ancestry men	NA	8q24.23	LOC101927915, FAM135B	rs2175877-A	0.247284	9E-6		0.387872	[0.22-0.56] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1642	chr8	138569303	138569304	rs148752344	31324189	Kim W	2019-07-19	Respir Res	DSP variants may be associated with longitudinal change in quantitative emphysema.	Emphysema annual change measurement in smokers (adjusted lung density)	4,427 European ancestry individuals, 1,158 African American individuals	NA	8q24.23	FAM135B	rs148752344-T	NR	5E-6		0.151	[0.086-0.216] unit decrease	Illumina [NR] (imputed)	N
1642	chr8	138578185	138578186	rs7832583	30093639	Machiela MJ	2018-08-09	Nat Commun	Genome-wide association study identifies multiple new loci associated with Ewing sarcoma susceptibility.	Ewing sarcoma	733 European ancestry cases, 1,346 European ancestry controls	657 European ancestry cases, 4,078 European ancestry controls	8q24.23	NR	rs7832583-T	NR	1E-7		1.56896	[1.32654-1.85569]	Illumina [6876682] (imputed)	N
1642	chr8	138579553	138579554	rs72728184	31324189	Kim W	2019-07-19	Respir Res	DSP variants may be associated with longitudinal change in quantitative emphysema.	Emphysema annual change measurement in smokers (adjusted lung density)	4,427 European ancestry individuals, 1,158 African American individuals	NA	8q24.23	FAM135B	rs72728184-T	0.089	3E-6	(EA)	0.168	[0.097-0.239] unit decrease	Illumina [NR] (imputed)	N
1642	chr8	138592200	138592201	rs77119793	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8q24.23	NR	rs77119793-A	0.01045	7E-17	(RAB21)	0.06459	NR unit decrease	Illumina [1671387] (imputed)	N
1642	chr8	138629166	138629167	rs6995581	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder	29,475 European ancestry cases, 63,482 European ancestry controls	NA	8q24.23	NR	rs6995581-G	0.209451	3E-6		1.0741138	[1.04-1.11]	Affymetrix [7791636] (imputed)	N
1642	chr8	138632243	138632247	rs200534628	29346644	Yan Q	2018-01-15	Hum Mol Genet	Genome-wide Analysis of Disease Progression in Age-related Macular Degeneration.	Disease progression in age-related macular degeneration	1,105 progressed eyes and 3,912 non-progressed eyes from 2,721 European ancestry individuals	NA	8q24.23	KHDRBS3, FAM135B	rs200534628-T	0.11	8E-6		1.52		Illumina [8974355] (imputed)	N
1643	chr8	138694430	138694431	rs4416856	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	8q24.23	NR	rs4416856-?		2E-6	(CCL23)	0.2862	[NR] unit decrease	Illumina [NR]	N
1643	chr8	138775700	138775701	rs10104949	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Initial pursuit acceleration	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	8q24.23	LOC101927915	rs10104949-G	0.4889	6E-6				Illumina [4404269] (imputed)	N
1643	chr8	138776546	138776547	rs56292044	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	8q24.23	Intergenic	rs56292044-T	0.557	3E-6	(AA)	0.027	NR unit decrease	Illumina [NR] (imputed)	N
1644	chr8	138865555	138865556	rs6986921	29514873	Mychaleckyj JC	2018-03-07	J Med Genet	Multiplex genomewide association analysis of breast milk fatty acid composition extends the phenotypic association and potential selection of FADS1 variants to arachidonic acid, a critical infant micronutrient.	Breast milk fatty acid composition (maternal genotype effect)	1,142 Bangladeshi ancestry (non-array genotyped, whole-genome imputed) mothers	NA	8q24.23	intergenic	rs6986921-A	0.12	2E-8	(capric acid)	0.6	[-1.556-2.756] unit increase	Illumina [~ 932000] (imputed)	N
1644	chr8	138865555	138865556	rs6986921	29514873	Mychaleckyj JC	2018-03-07	J Med Genet	Multiplex genomewide association analysis of breast milk fatty acid composition extends the phenotypic association and potential selection of FADS1 variants to arachidonic acid, a critical infant micronutrient.	Breast milk fatty acid composition (infant genotype effect)	1,142 Bangladeshi ancestry infants	NA	8q24.23	intergenic	rs6986921-A	0.12	4E-6	(capric acid)			Illumina [~ 932000]	N
1644	chr8	138905295	138905296	rs9657451	20125193	Cirulli ET	2010-02-03	Eur J Hum Genet	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American individuals, up to 74 South Asian ancestry individuals	NA	8q24.23	FAM135B	rs9657451-?	NR	2E-6	(Delayed Story Recall)			Illumina [up to 563855]	N
1644	chr8	138909718	138909719	rs62531686	23555189	Chen Z	2013-04-01	Neoplasia	Genome-wide association study identifies genetic determinants of urine PCA3 levels in men.	PCA3 expression level	1,371 European ancestry individuals	NA	8q24.23	FLJ45872	rs62531686-C	0.3	8E-7		0.83	[0.76-0.90] unit increase	Illumina [3076666] (imputed)	N
1644	chr8	138918944	138918945	rs2705293	18762592	van den Oord EJ	2008-09-01	Arch Gen Psychiatry	Genomewide association analysis followed by a replication study implicates a novel candidate gene for neuroticism.	Neuroticism	1,227 European ancestry individuals	1,880 European ancestry individuals	8q24.23	AK127771	rs2705293-?	NR	6E-6				Affymetrix [420287]	N
1646	chr8	139077727	139077728	rs984440	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	8q24.23	FLJ45872	rs984440-A	0.127	3E-6	(RANTES )	0.03	[NR] pg/mL increase	Illumina [899892]	N
1647	chr8	139255917	139255918	rs4909764	22228203	Aslibekyan S	2012-01-05	Pharmacogenet Genomics	A genome-wide association study of inflammatory biomarker changes in response to fenofibrate treatment in the Genetics of Lipid Lowering Drug and Diet Network.	Inflammatory biomarkers	1,092 European ancestry individuals	NA	8q24.23	FAM135B	rs4909764-?	NR	2E-6	(Monocyte chemoattractant protein-1)			Affymetrix [2543887] (imputed)	N
1647	chr8	139301377	139301378	rs10875423	24024966	Teumer A	2013-08-14	J Clin Periodontol	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (PAL4Q3)	up to 2,969 European ancestry individuals	NA	8q24.23	FAM135B	rs10875423-?	0.18	9E-6	(Age 20-81 years)	1.43	[1.22-1.67]	Affymetrix, Illumina [up to 17585496] (imputed)	N
1647	chr8	139310866	139310867	rs60134676	28927378	Qian DC	2017-09-19	BMC Genomics	Genome-wide imaging association study implicates functional activity and glial homeostasis of the caudate in smoking addiction.	Caudate activity during reward	106 individuals	NA	8q24.23	NR	rs60134676-A	0.0855728	6E-6		1.1590749	[0.68-1.63] unit decrease	Illumina [at least 621854] (imputed)	N
1647	chr8	139328195	139328196	rs11166805	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	8q24.23		rs11166805-G	0.396	3E-10		0.007	[0.005-0.009] unit decrease	NR [NR] (imputed)	N
1648	chr8	139425291	139425292	rs16909119	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	8q24.23	COL22A1	rs16909119-?	NR	5E-6	(creatinine)	0.37830615	[0.22-0.54] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1649	chr8	139495501	139495502	rs957322	28030426	Mahmoudpour SH	2017-03-27	Pharmacogenet Genomics	Meta-analysis of genome-wide association studies on the intolerance of angiotensin-converting enzyme inhibitors.	Angiotensin-converting enzyme inhibitor intolerance	972 European ancestry intolerant individuals, 4,189 European ancestry tolerant individuals	NA	8q24.23	FAM135B	rs957322-?	0.044117	9E-6		2.94359	[1.830155-4.73442]	Affymetrix, Illumina [NR] (imputed)	N
1649	chr8	139504269	139504270	rs11166827	20125193	Cirulli ET	2010-02-03	Eur J Hum Genet	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American individuals, up to 74 South Asian ancestry individuals	NA	8q24.23	FAM135B	rs11166827-?	NR	5E-6	(Digit Span Backward)			Illumina [up to 563855]	N
1649	chr8	139557353	139557354	rs141621328	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Trunk fat mass	3,399 whole genome sequenced individuals, 12,838 European ancestry individuals	10,667 European ancestry individuals	8q24.23	COL22A1	rs141621328-T	0.0054	9E-7		0.5062	[0.3-0.71] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1650	chr8	139608717	139608718	rs61496269	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	8q24.23	NR	rs61496269-?	NR	2E-6		0.397	[NR] unit increase	Illumina [up to 11892802] (imputed)	N
1650	chr8	139644682	139644683	rs77044609	31123309	Rayner C	2019-05-23	Transl Psychiatry	A genome-wide association meta-analysis of prognostic outcomes following cognitive behavioural therapy in individuals with anxiety and depressive disorders.	Response to cognitive-behavioural therapy in major depressive disorder	832 adult cases	NA	8q24.23	COL22A1, FAM135B	rs77044609-C	0.05	1E-6		0.55	[0.33-0.77] unit increase	Illumina [at least 4710000] (imputed)	N
1650	chr8	139663616	139663617	rs3923549	34847907	Tegelberg P	2021-11-30	BMC Oral Health	Genome-wide association study of periodontal pocketing in Finnish adults.	Periodontal pocket (adjusted for age, sex and smoking status)	3,906 Finnish ancestry individuals	NA	8q24.23		rs3923549-G	0.91	3E-6				Illumina [NR] (imputed)	N
1650	chr8	139666209	139666210	rs78900671	30715261	Brouwer WP	2019-02-02	Clin Infect Dis	Genome Wide Association Study Identifies Genetic Variants Associated With Early And Sustained Response To (Peg)Interferon In Chronic Hepatitis B Patients: The GIANT-B Study.	Response to (pegylated) interferon in chronic hepatitis B	282 Asian, European, African and other ancestry cases, 641 Asian, European, African and other ancestry controls	NA	8q24.23	TRAPPC9, COL22A1, FAM135B	rs78900671-C	0.03649	6E-7		1.434	[0.87-2] unit increase	Illumina [8102086] (imputed)	N
1650	chr8	139681482	139681483	rs4909828	33109212	Chang H	2020-10-28	BMC Med	Genetic architecture of cardiometabolic risks in people living with HIV.	HDL cholesterol levels in HIV infection	3,095 European ancestry individuals, 3,189 African American individuals	NA	8q24.23	COL22A1	rs4909828-?		4E-6	(African American)	0.11563852	[0.067-0.164] unit increase	Illumina [13620258] (imputed)	N
1651	chr8	139778879	139778880	rs11166844	35157032	Ramachandran D	2022-02-14	Hum Mol Genet	Genome-wide association study and functional follow-up identifies 14q12 as a candidate risk locus for cervical cancer.	Cervical cancer	363 German ancestry cases, 861 German ancestry controls	NA	8q24.23	NR	rs11166844-T	0.4232	3E-6		0.6399	[0.45-0.83]	Illumina [10000612] (imputed)	N
1652	chr8	139876237	139876238	rs12549623	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota relative abundance (bacterial taxa)	up to 858 Metropolitan French ancestry individuals	NA	8q24.23	NR	rs12549623-?	NR	7E-9	(Lentisphaerae)	0.736448	[0.51-0.96] unit increase	Illumina [5293637] (imputed)	N
1652	chr8	139884508	139884509	rs6988229	23508266	Duan QL	2013-03-19	Pharmacogenomics J	A genome-wide association study of bronchodilator response in asthmatics.	Asthma (bronchodilator response)	Up to 403 European ancestry asthmatic children and their parents	764 European ancestry cases, 592 Costa Rican ancestry cases	8q24.23	COL22A1	rs6988229-T	0.20	9E-6	(Recessive Model)			Illumina [534290]	N
1652	chr8	139908781	139908782	rs9644439	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	8q24.23		rs9644439-G	0.22	8E-21		9.36	z score increase	Affymetrix [9061022] (imputed)	N
1652	chr8	139908781	139908782	rs9644439	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	8q24.23	NR	rs9644439-G	0.2237	1E-17				NR [9056863] (imputed)	N
1652	chr8	139908781	139908782	rs9644439	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 20)	19,670 European ancestry individuals	NA	8q24.23		rs9644439-?	NR	4E-10				NR [9705931] (imputed)	N
1652	chr8	139909652	139909653	rs11992725	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Retinal detachment	4,257 European ancestry cases, 39,181 European ancestry controls	NA	8q24.23	COL22A1	rs11992725-A	0.68	5E-10		0.16	[0.1-0.22] unit decrease	NR [NR]	N
1652	chr8	139909652	139909653	rs11992725	31816047	Boutin TS	2019-12-09	Hum Mol Genet	Insights into the genetic basis of retinal detachment.	Retinal detachment or retinal break	6,141 European ancestry cases, 59,475 European ancestry controls	9,171 European ancestry cases, 406,168 European ancestry controls	8q24.23	COL22A1	rs11992725-G	0.32	7E-11		1.11	[1.076-1.146]	Affymetrix, Illumina [7581674] (imputed)	N
1652	chr8	139909652	139909653	rs11992725	31816047	Boutin TS	2019-12-09	Hum Mol Genet	Insights into the genetic basis of retinal detachment.	Retinal detachment or retinal break	3,977 British ancestry cases, 360,233 British ancestry controls	NA	8q24.23	COL22A1	rs11992725-C	0.319	3E-10		1.1599944	1.10665979-1.21589941	Affymetrix, Illumina [7701827] (imputed)	N
1652	chr8	139909652	139909653	rs11992725	31816047	Boutin TS	2019-12-09	Hum Mol Genet	Insights into the genetic basis of retinal detachment.	Retinal detachment	2,893 British ancestry cases, 360,233 British ancestry controls	NA	8q24.23	COL22A1	rs11992725-?	0.318946	7E-10		1.1797409	[1.11795046-1.24494666]	Affymetrix, Illumina [7701827] (imputed)	N
1652	chr8	139910037	139910038	rs10094560	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Retinal detachment	6,591 European ancestry cases, 470,440 European ancestry controls, 1,389 East Asian ancestry cases, 168,903 East Asian ancestry controls	NA	8q24.23		rs10094560-T	NR	4E-9		0.1422	[0.095-0.189] unit decrease	Affymetrix, Illumina [25843609] (imputed)	N
1652	chr8	139911538	139911539	rs2318348	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	8q24.23		rs2318348-G	0.22	3E-19		8.97	z score increase	Affymetrix [9061022] (imputed)	N
1652	chr8	139927015	139927016	rs2318350	27723756	Wang J	2016-10-10	Nat Genet	Genome-wide association analysis identifies variation in vitamin D receptor and other host factors influencing the gut microbiota.	Gut microbiota (bacterial taxa)	1,812 European ancestry individuals	NA	8q24.3	COL22A1	rs2318350-T	NR	4E-9	(OTU10032 unclassified Enterobacteriaceae Species-level OTU)	1.15	unit decrease	Affymetrix, Illumina [6344846] (imputed)	N
1652	chr8	139965797	139965798	rs36056951	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cerebrospinal fluid t-tau:AB1-42 ratio	up to 189 European and other ancestry early mild cognitive impairment cases,  up to 251 European and other ancestry late mild cognitive impairment cases,  up to 121 European and other ancestry Alzheimer's disease cases,  up to 215 European and other ancestry health	up to 3 European and other ancestry significant memory concern cases,  up to 57 European and other ancestry early mild cognitive impairment cases,   up to 61 European and other ancestry late mild cognitive impairment cases,  up to 62 European and other ancestry Alzheimer's disease cases,  up to 21 European and other ancestry healthy controls	8q24.3	COL22A1, KCNK9	rs36056951-C	0.03	4E-6		0.3732	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
1652	chr8	139965797	139965798	rs36056951	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cerebrospinal T-tau levels	up to 189 European and other ancestry early mild cognitive impairment cases,  up to 251 European and other ancestry late mild cognitive impairment cases,  up to 121 European and other ancestry Alzheimer's disease cases,  up to 215 European and other ancestry healthy controls	up to 3 European and other ancestry significant memory concern cases,  up to 57 European and other ancestry early mild cognitive impairment cases,   up to 61 European and other ancestry late mild cognitive impairment cases,  up to 62 European and other ancestry Alzheimer's disease cases,  up to 21 European and other ancestry healthy controls	8q24.3	COL22A1, KCNK9	rs36056951-C	0.03	4E-7		0.3291	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
1652	chr8	139979824	139979825	rs4736192	25390645	Otowa T	2014-11-12	PLoS One	Genome-wide and gene-based association studies of anxiety disorders in European and African American samples.	Anxiety disorder	324 African American cases, 273 African American controls, 757 European ancestry cases, 940 European ancestry controls	NA	8q24.3	intergenic	rs4736192-A		9E-6	(EA, factor score analysis)	0.073	[NR] unit increase	Affymetrix [up to 730090]	N
1653	chr8	140090896	140090897	rs75435149	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip	15 Asian ancestry cases, 13 European ancestry cases, 15 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	8q24.3	NR	rs75435149-?	NR	5E-7		4.35	[3.33-5.68]	Illumina [539000] (imputed)	N
1653	chr8	140102574	140102575	rs72733655	31206233	Real LM	2019-06-17	Liver Int	A genome-wide association study in low susceptibility to hepatitis C virus infection (GEHEP012 Study).	Low susceptibility to hepatitis C infection	27 Spanish ancestry uninfected high-risk individuals, 804 Spanish ancestry infected individuals	NA	8q24.3	COL22A1	rs72733655-T	0.02052	4E-6		9.545	[4.31-21.12]	Affymetrix [7675561] (imputed)	N
1654	chr8	140213529	140213530	rs7001362	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Anti-saccade response	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	8q24.3	COL22A1	rs7001362-G	0.382	9E-6				Illumina [4404269] (imputed)	N
1655	chr8	140258042	140258043	rs4736065	31504550	Bradfield JP	2019-07-05	Hum Mol Genet	A Trans-ancestral Meta-Analysis of Genome-Wide Association Studies Reveals Loci Associated with Childhood Obesity.	Childhood obesity	8,613 European ancestry cases, 3,213 African American cases, 69 Moroccan ancestry cases, 986 Hispanic/Latino cases, 124 East Asian ancestry cases, 12,696 European ancestry controls, 1,392 African American controls, 64 Moroccan ancestry controls, 993 Hispanic/Latino controls, 454 East Asian ancestry controls	NA	8q24.3	NR	rs4736065-A	NR	3E-6	(East Asian)	0.8968	[0.52-1.28] unit increase	Affymetrix, Illumina [up to 15123508] (imputed)	N
1655	chr8	140278834	140278835	rs6990182	32579418	Maukonen M	2020-06-24	J Biol Rhythms	Genetic Associations of Chronotype in the Finnish General Population.	Evening vs. morning chronotype (sMEQ score)	2,364 Finnish ancestry evening individuals, 5,072 Finnish ancestry morning individuals	NA	8q24.3	intergenic	rs6990182-G	NR	6E-7		1.39354	[1.2235-1.58721]	Illumina [5842835] (imputed)	N
1655	chr8	140280789	140280790	rs12386893	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Eotaxin levels	8,153 Finnish ancestry individuals	NA	8q24.3	NR	rs12386893-G	NR	9E-6		0.0788	[0.044-0.114] SD units decrease	NR [10700000] (imputed)	N
1655	chr8	140284456	140284457	rs55635078	33768542	Liu Y	2021-03-26	Clin Pharmacol Ther	Class II HLA Variants Associate with Risk of Pegaspargase Hypersensitivity.	Asparaginase hypersensitivity in acute lymphoblastic leukemia	310 African ancestry individuals, 798 Native American individuals, 387 individuals	NA	8q24.3	NR	rs55635078-T	NR	3E-7		2.5	[NR]	Illumina [NR] (imputed)	N
1655	chr8	140335813	140335814	rs7841806	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in overweight individuals	up to 10,058 European ancestry male individuals, up to 7,189 European ancestry female individuals	NA	8q24.3	COL22A1, KCNK9	rs7841806-C	0.4	3E-7		0.073	[0.046-0.1] kg/m2 increase	Affymetrix, Illumina [at least 188473] (imputed)	N
1655	chr8	140335813	140335814	rs7841806	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in overweight individuals	up to 10,058 European ancestry male individuals, up to 7,189 European ancestry female individuals	NA	8q24.3	COL22A1, KCNK9	rs7841806-C	0.4	3E-6	(men)	0.086	[0.051-0.121] kg/m2 increase	Affymetrix, Illumina [at least 188473] (imputed)	N
1655	chr8	140345033	140345034	rs1564159	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	8q24.3	NR	rs1564159-?	NR	1E-6				Affymetrix [NR]	N
1655	chr8	140350232	140350233	rs4588831	30498476	Liu H	2018-11-15	Front Endocrinol (Lausanne)	Heritability and Genome-Wide Association Study of Plasma Cholesterol in Chinese Adult Twins.	Low density lipoprotein cholesterol levels	139 Chinese ancestry dizygotic twin pairs	NA	8q24.3	KCNK9	rs4588831-?		5E-6				Illumina [7405822] (imputed)	N
1655	chr8	140352358	140352359	rs16910486	26480920	Sung YJ	2015-10-20	Int J Obes (Lond)	Genome-wide association studies suggest sex-specific loci associated with abdominal and visceral fat.	Visceral adipose tissue	1,152 European ancestry males, 1,361 European ancestry females	NA	8q24.3	KCNK9	rs16910486-A	0.86	6E-7	(women)	0.07	[NR] unit increase	Affymetrix, Illumina [2473256] (imputed)	N
1655	chr8	140354985	140354986	rs4736253	33893285	Guindo-Martinez M	2021-04-23	Nat Commun	The impact of non-additive genetic associations on age-related complex diseases.	Neuropsychiatric disorders	8,624 European ancestry cases, 48,013 European ancestry controls	NA	8q24.3		rs4736253-T	0.7488744	5E-8		0.87		Affymetrix [15175619] (imputed)	N
1655	chr8	140354985	140354986	rs4736253	29730043	Li J	2018-05-02	Schizophr Res	Identifying the genetic risk factors for treatment response to lurasidone by genome-wide association study: A meta-analysis of samples from three independent clinical trials.	Response to lurasidone in schizophrenia	264 European ancestry cases, 158 African American ancestry cases	NA	8q24.3	KCNK9, COL22A1	rs4736253-?	NR	5E-8	(EA)	5.448	z score increase	Affymetrix, Illumina [up to 1994688]	N
1655	chr8	140354985	140354986	rs4736253	29730043	Li J	2018-05-02	Schizophr Res	Identifying the genetic risk factors for treatment response to lurasidone by genome-wide association study: A meta-analysis of samples from three independent clinical trials.	Response to lurasidone in schizophrenia	264 European ancestry cases, 158 African American ancestry cases	NA	8q24.3	COL22A1, KCNK9	rs4736253-?	NR	2E-6		4.718	z score increase	Affymetrix, Illumina [up to 1994688]	N
1656	chr8	140490488	140490489	rs144003581	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	8q24.3	NR	rs144003581-?	NR	8E-6		4221.237	NR unit decrease	Illumina [2379855]	N
1656	chr8	140496241	140496242	rs4645543	25411281	Dashti HS	2014-10-08	Am J Clin Nutr	Meta-analysis of genome-wide association studies for circulating phylloquinone concentrations.	Circulating phylloquinone levels	2,138 European ancestry individuals	NA	8q24.3	KCNK9	rs4645543-T	0.04	2E-7	(Model 1)	0.42	[0.26-0.58] unit decrease	Affymetrix, Illumina [2543887] (imputed)	N
1657	chr8	140519516	140519517	rs2468677	21700879	Qi L	2011-06-23	Diabetes	Novel locus FER is associated with serum HMW adiponectin levels.	Adiponectin levels	1,591 European ancestry female individuals	626 European ancestry individuals from 235 families	8q24.3	KCNK9	rs2468677-G	0.52	8E-7				Affymetrix [2543887] (imputed)	N
1657	chr8	140564191	140564192	rs969124	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (father's age at death)	309,383 European ancestry individuals	NA	8q24.3	NR	rs969124-A	NR	9E-6		0.01198	[0.0067-0.0173] unit increase	Illumina [541614]	N
1658	chr8	140640633	140640634	rs2014712	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	8q24.3		rs2014712-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1658	chr8	140646050	140646051	rs62520182	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	8q24.3		rs62520182-?	NR	8E-20				NR [~ 8900000] (imputed)	N
1658	chr8	140651778	140651779	rs1469039	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	8q24.3	KCNK9	rs1469039-A	0.19	4E-12		0.05	[0.036-0.064] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
1658	chr8	140669744	140669745	rs888349	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 3, length of philtrum)	2,187 European ancestry individuals	NA	8q24.3	NR	rs888349-G	0.2201	5E-6		0.1673	[0.096-0.239] unit increase	Illumina [10677593] (imputed)	N
1658	chr8	140707920	140707921	rs78209928	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8q24.3	NR	rs78209928-T	0.01045	9E-9	(PFN1)	1.429	NR unit increase	Illumina [1671387] (imputed)	N
1658	chr8	140707920	140707921	rs78209928	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8q24.3	NR	rs78209928-T	0.01045	8E-9	(RNH1)	0.2098	NR unit increase	Illumina [1671387] (imputed)	N
1658	chr8	140707920	140707921	rs78209928	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8q24.3	NR	rs78209928-T	0.01045	7E-9	(SEPT7)	0.0741	NR unit increase	Illumina [1671387] (imputed)	N
1658	chr8	140707920	140707921	rs78209928	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8q24.3	NR	rs78209928-T	0.01045	7E-9	(CAPN2)	0.05833	NR unit increase	Illumina [1671387] (imputed)	N
1658	chr8	140707920	140707921	rs78209928	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8q24.3	NR	rs78209928-T	0.01045	6E-9	(PARVA)	0.03069	NR unit increase	Illumina [1671387] (imputed)	N
1658	chr8	140707920	140707921	rs78209928	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8q24.3	NR	rs78209928-T	0.01045	6E-9	(FKBP1A)	0.03265	NR unit increase	Illumina [1671387] (imputed)	N
1658	chr8	140707920	140707921	rs78209928	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8q24.3	NR	rs78209928-T	0.01045	6E-13	(CLIC1)	0.245	NR unit increase	Illumina [1671387] (imputed)	N
1658	chr8	140707920	140707921	rs78209928	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8q24.3	NR	rs78209928-T	0.01045	5E-9	(ACTR2)	0.09162	NR unit increase	Illumina [1671387] (imputed)	N
1658	chr8	140707920	140707921	rs78209928	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8q24.3	NR	rs78209928-T	0.01045	5E-11	(LCP1)	0.8332	NR unit increase	Illumina [1671387] (imputed)	N
1658	chr8	140707920	140707921	rs78209928	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8q24.3	NR	rs78209928-T	0.01045	5E-10	(ACTR3)	0.2062	NR unit increase	Illumina [1671387] (imputed)	N
1658	chr8	140707920	140707921	rs78209928	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8q24.3	NR	rs78209928-T	0.01045	4E-9	(MTPN)	0.03722	NR unit increase	Illumina [1671387] (imputed)	N
1658	chr8	140707920	140707921	rs78209928	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8q24.3	NR	rs78209928-T	0.01045	4E-10	(CFL1)	1.089	NR unit increase	Illumina [1671387] (imputed)	N
1658	chr8	140707920	140707921	rs78209928	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8q24.3	NR	rs78209928-T	0.01045	3E-12	(CNN2)	0.02343	NR unit increase	Illumina [1671387] (imputed)	N
1658	chr8	140707920	140707921	rs78209928	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8q24.3	NR	rs78209928-T	0.01045	3E-10	(TAGLN2)	0.4583	NR unit increase	Illumina [1671387] (imputed)	N
1658	chr8	140707920	140707921	rs78209928	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8q24.3	NR	rs78209928-T	0.01045	2E-9	(RSU1)	0.05928	NR unit increase	Illumina [1671387] (imputed)	N
1658	chr8	140707920	140707921	rs78209928	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8q24.3	NR	rs78209928-T	0.01045	2E-8	(NUTF2)	0.02923	NR unit increase	Illumina [1671387] (imputed)	N
1658	chr8	140707920	140707921	rs78209928	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8q24.3	NR	rs78209928-T	0.01045	2E-8	(KCTD12)	0.03438	NR unit increase	Illumina [1671387] (imputed)	N
1658	chr8	140707920	140707921	rs78209928	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8q24.3	NR	rs78209928-T	0.01045	2E-8	(FLNA)	1.16	NR unit increase	Illumina [1671387] (imputed)	N
1658	chr8	140707920	140707921	rs78209928	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8q24.3	NR	rs78209928-T	0.01045	1E-9	(CNN3)	0.01974	NR unit increase	Illumina [1671387] (imputed)	N
1658	chr8	140707920	140707921	rs78209928	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8q24.3	NR	rs78209928-T	0.01045	1E-8	(RBP1)	0.06815	NR unit increase	Illumina [1671387] (imputed)	N
1658	chr8	140707920	140707921	rs78209928	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8q24.3	NR	rs78209928-T	0.01045	1E-8	(RAC1)	0.1381	NR unit increase	Illumina [1671387] (imputed)	N
1658	chr8	140707920	140707921	rs78209928	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8q24.3	NR	rs78209928-T	0.01045	1E-8	(CTSC)	0.02847	NR unit increase	Illumina [1671387] (imputed)	N
1658	chr8	140707920	140707921	rs78209928	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8q24.3	NR	rs78209928-T	0.01045	1E-8	(ARHGDIB)	0.0853	NR unit increase	Illumina [1671387] (imputed)	N
1658	chr8	140707920	140707921	rs78209928	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8q24.3	NR	rs78209928-T	0.01045	1E-10	(TYMP)	0.6714	NR unit increase	Illumina [1671387] (imputed)	N
1659	chr8	140796419	140796420	rs11166927	28918882	Wattacheril J	2017-09-14	J Pediatr	Genome-Wide Associations Related to Hepatic Histology in Nonalcoholic Fatty Liver Disease in Hispanic Boys.	Pediatric non-alcoholic fatty liver disease activity score	208 Hispanic boys	NA	8q24.3	TRAPPC9	rs11166927-C	0.295	9E-7	(additive model)			Illumina [up to 624297]	N
1659	chr8	140797138	140797139	rs117398731	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	8q24.3		rs117398731-?	NR	9E-9				NR [~ 8900000] (imputed)	N
1660	chr8	140915691	140915692	rs12548023	34586716	Chen J	2021-09-29	Mol Genet Genomic Med	Heritability and genome-wide association study of blood pressure in Chinese adult twins.	Pulse pressure	137 Chinese ancestry twins	NA	8q24.3		rs12548023-?	NR	6E-6				Illumina [7401356] (imputed)	N
1660	chr8	140916795	140916796	rs67701708	33539483	Li Z	2021-02-04	PLoS One	Bivariate genome-wide association study (GWAS) of body mass index and blood pressure phenotypes in northern Chinese twins.	Systolic blood pressure and diastolic blood pressure (bivariate analysis)	274 Chinese ancestry dizygotic twins	NA	8q24.3	TRAPPC9	rs67701708-?	NR	8E-6				Illumina [7401356] (imputed)	N
1660	chr8	140923681	140923682	rs36002174	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	8q24.3		rs36002174-T	NR	6E-11		0.0156	[0.011-0.02] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1660	chr8	140926602	140926603	rs11784933	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	8q24.3	NR	rs11784933-T	0.2456	5E-8	(East Asian)	0.3909	[0.25-0.53] unit decrease	Illumina [6200000] (imputed)	N
1660	chr8	140993906	140993907	rs75755010	27669027	Boueiz A	2016-09-26	Am J Respir Crit Care Med	Genome-Wide Association Study of the Genetic Determinants of Emphysema Distribution.	Emphysema distribution in smoking	7,039 European ancestry individuals, 2,955 African American individuals, 1538 individuals	NA	8q24.3	TRAPPC9	rs75755010-A	0.08	3E-8	(ratio950)	0.15	NR unit decrease	Illumina [at least 10657975] (imputed)	N
1660	chr8	140995242	140995243	rs1870805	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	8q24.3	TRAPPC9	rs1870805-A	0.275	3E-6	(Urinary nitrogen )	0.03	[NR] g/d increase	Illumina [899892]	N
1661	chr8	141045731	141045732	rs6578061	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Diastolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	8q24.3	TRAPPC9	rs6578061-A	0.5068	2E-8		0.1465	[0.095-0.198] mmHg increase	Affymetrix [NR] (imputed)	N
1661	chr8	141054867	141054868	rs71514664	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	8q24.3	TRAPPC9	rs71514664-C	0.0023	8E-6		0.6076	[0.34-0.87] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1661	chr8	141055723	141055724	rs4288356	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	8q24.3		rs4288356-A	NR	3E-24		0.0225	[0.018-0.027] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
1661	chr8	141055723	141055724	rs4288356	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Pulse pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	8q24.3	TRAPPC9	rs4288356-A	0.615	2E-11		0.224	[0.16-0.29] unit decrease	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
1661	chr8	141055723	141055724	rs4288356	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Pulse pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	8q24.3	TRAPPC9	rs4288356-A	0.615	1E-8	(EA, initial)	0.282	[0.19-0.38] unit decrease	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
1661	chr8	141059649	141059650	rs4631439	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	8q24.3	TRAPPC9	rs4631439-C		9E-6		0.219	unit increase	Affymetrix [at least 2696785] (imputed)	N
1661	chr8	141059649	141059650	rs4631439	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	8q24.3	TRAPPC9	rs4631439-C		3E-7		0.19	unit increase	Affymetrix [at least 2696785] (imputed)	N
1661	chr8	141059649	141059650	rs4631439	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	8q24.3	TRAPPC9	rs4631439-C		3E-6	(EA)	0.193	unit increase	Affymetrix [at least 2696785] (imputed)	N
1661	chr8	141059649	141059650	rs4631439	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	8q24.3	TRAPPC9	rs4631439-C		2E-10		0.203	unit increase	Affymetrix [at least 2696785] (imputed)	N
1661	chr8	141060026	141060027	rs4454254	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Pulse pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	8q24.3	TRAPPC9	rs4454254-A	0.63	5E-16		0.261	[0.2-0.32] unit decrease	Affymetrix [~ 9800000] (imputed)	N
1661	chr8	141060746	141060747	rs10088725	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	8q24.3	TRAPPC9	rs10088725-A	0.5801	1E-13		0.189	[0.14-0.24] mmHg decrease	Affymetrix [NR] (imputed)	N
1661	chr8	141119150	141119151	rs7830900	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	8q24.3		rs7830900-?	NR	3E-13				NR [~ 8900000] (imputed)	N
1661	chr8	141128356	141128357	rs4736138	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Pars opercularis volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	8q24.3	TRAPPC9	rs4736138-?		4E-6				Illumina [4322238] (imputed)	N
1661	chr8	141129835	141129836	rs79225303	29317602	Hall LS	2018-01-10	Transl Psychiatry	Genome-wide meta-analyses of stratified depression in Generation Scotland and UK Biobank.	Major depressive disorder	6,997 European ancestry female cases, 16,172 European ancestry female controls, 3,852 European ancestry male cases, 16,034 European ancestry male controls	NA	8q24.3	TRAPPC9	rs79225303-T	NR	2E-6	(females)	0.17	[0.092-0.248] unit decrease	Affymetrix, Illumina [7105178] (imputed)	N
1661	chr8	141141820	141141821	rs80205060	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,963 Sub-Saharan African ancestry females	NA	8q24.3		rs80205060-G	0.973297	3E-6		0.0389115	[0.022-0.055] unit decrease	Illumina [13900000] (imputed)	N
1661	chr8	141147355	141147356	rs142956251	32349335	Lundback V	2020-04-27	Cells	Genome-Wide Association Study of Diabetogenic Adipose Morphology in the GENetics of Adipocyte Lipolysis (GENiAL) Cohort.	Adipose morphology	894 individuals	NA	8q24.3	NR	rs142956251-A	0.0139	8E-6		155.0	[87-224] unit increase	NR [9714326] (imputed)	N
1661	chr8	141150168	141150169	rs6992848	22952603	Hart AB	2012-08-28	PLoS One	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 10 individuals	NA	8q24.3	TRAPPC9	rs6992848-?	NR	7E-6	(SF10)			Affymetrix [5476100] (imputed)	N
1662	chr8	141176328	141176329	rs117659209	29346644	Yan Q	2018-01-15	Hum Mol Genet	Genome-wide Analysis of Disease Progression in Age-related Macular Degeneration.	Disease progression in age-related macular degeneration	1,105 progressed eyes and 3,912 non-progressed eyes from 2,721 European ancestry individuals	NA	8q24.3	TRAPPC9	rs117659209-C	0.93	6E-6		1.92		Illumina [8974355] (imputed)	N
1663	chr8	141341694	141341695	rs148845260	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PAPLN	5,361 Icelandic ancestry individuals	NA	8q24.3		rs148845260-C	0.01229	2E-14		0.116457	[0.087-0.146] unit increase	Illumina [7506463] (imputed)	N
1663	chr8	141361122	141361123	rs74838395	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8q24.3	NR	rs74838395-T	0.01916	2E-8	(S100A6)	0.08921	NR unit increase	Illumina [1671387] (imputed)	N
1663	chr8	141404328	141404329	rs7823724	25189868	Sung YJ	2014-09-03	Am J Hypertens	Gene-smoking interactions identify several novel blood pressure loci in the Framingham Heart Study.	Blood pressure (smoking interaction)	Up to 6,889 individuals	NA	8q24.3	TRAPPC9	rs7823724-?	NR	3E-7	(SBP,Pack-years)			Affymetrix [2485435] (imputed)	N
1663	chr8	141426139	141426140	rs28368302	33095540	Sherman BT	2020-10-20	AIDS	Genome-wide association study of high-sensitivity C-reactive protein, D-dimer and Interleukin-6 levels in multi-ethnic HIV+ cohorts.	Interleukin-6 levels in HIV infection	4,675 European ancestry individuals, 1,732 African ancestry individuals, 645 Admixed American individuals	NA	8q24.3	TRAPPC9	rs28368302-A	NR	3E-8	(Hispanic/Latino)	0.2322	[0.15-0.31] unit decrease	Affymetrix [up to 12642786] (imputed)	N
1664	chr8	141458333	141458334	rs73713131	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	8q24.3		rs73713131-?	NR	6E-9				NR [~ 8900000] (imputed)	N
1664	chr8	141458333	141458334	rs73713131	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	8q24.3		rs73713131-?	NR	5E-10				NR [~ 8900000] (imputed)	N
1664	chr8	141491068	141491069	rs62527813	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid pneumonia vs population)	1,004 European ancestry cases, 680,354 European ancestry controls, 218 Hispanic or Latin American cases, 94,318 Hispanic or Latin American controls, 64 Black or African American cases, 22,412 Black or African American controls	NA	8q24.3		rs62527813-?	NR	9E-6		0.5870102	[0.33-0.84] unit decrease	Illumina [9901720] (imputed)	N
1664	chr8	141513071	141513072	rs4246129	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	8q24.3	CTA-204B4.2	rs4246129-G	0.846793	5E-11		0.020694548	[0.015-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1664	chr8	141513071	141513072	rs4246129	28054174	Leslie EJ	2017-01-04	Hum Genet	Genome-wide meta-analyses of nonsyndromic orofacial clefts identify novel associations between FOXE1 and all orofacial clefts, and TP63 and cleft lip with or without cleft palate.	Cleft palate	272 Asian ancestry case-parent trios, 161 Asian ancestry controls, 38 European ancestry cases, 296 European ancestry case-parent trios, 835 European ancestry controls, 40 Latino or African cases, 34 Latino or African case-parent trios, 704 Latino or African controls, 14 case-parent trios.	NA	8q24.3	NR	rs4246129-?	NR	5E-6	(Asian)	2.0	[1.47-2.63]	Illumina [6090031] (imputed)	N
1664	chr8	141545192	141545193	rs2977464	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	8q24.3	NR	rs2977464-C	0.183897	1E-8		0.046172682	[0.03-0.062] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1664	chr8	141545192	141545193	rs2977464	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	8q24.3	Intergenic	rs2977464-T	0.1818	6E-11	(MTAG)	0.014	[0.0099-0.0181] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1664	chr8	141545192	141545193	rs2977464	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	8q24.3		rs2977464-T	0.1869	1E-8		0.0102	[0.0067-0.0137] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1664	chr8	141545192	141545193	rs2977464	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	8q24.3	Intergenic	rs2977464-T	0.1869	5E-11	(MTAG)	0.0111	[0.0078-0.0144] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1664	chr8	141545192	141545193	rs2977464	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	8q24.3	Intergenic	rs2977464-T	0.1884	1E-12	(MTAG)	0.0208	[0.015-0.026] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1664	chr8	141545192	141545193	rs2977464	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	8q24.3	Intergenic	rs2977464-T	0.1884	1E-8		0.0209	[0.014-0.028] unit increase	Affymetrix, Illumina [10100000] (imputed)	N
1664	chr8	141548418	141548419	rs2944772	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	8q24.3	Intergenic	rs2944772-C	0.8189	2E-9	(MTAG)	0.014	[0.0095-0.0185] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1665	chr8	141558413	141558414	rs35318074	34162658	Quinn MC	2021-06-23	Cancer Epidemiol Biomarkers Prev	Identification of a locus near ULK1 associated with progression-free survival in ovarian cancer.	Progression free survival in epithelial ovarian cancer treated with carboplatin and paclitaxel	2,352 European ancestry individuals	NA	8q24.3	NR	rs35318074-T		7E-6		0.1871	[0.11-0.27] unit increase	Illumina [12764477] (imputed)	N
1665	chr8	141558631	141558632	rs2977479	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	8q24.3		rs2977479-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1665	chr8	141574193	141574194	rs2944755	23400010	Del-Aguila JL	2013-02-12	Pharmacogenomics J	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NA	8q24.3	EIF2C2	rs2944755-A	0.06	8E-6	(AA-glucose response)	9.45	[5.31-13.59] mg/dL decrease	Affymetrix, Illumina [> 2000000] (imputed)	N
1665	chr8	141616182	141616183	rs3802214	34012112	Chiou J	2021-05-19	Nature	Interpreting type 1 diabetes risk with genetics and single-cell epigenomics.	Type 1 diabetes	18,942 European ancestry cases, 501,638 European ancestry controls	NA	8q24.3	AGO2	rs3802214-C	0.798827	3E-8		0.10660862	[0.069-0.144] unit decrease	Affymetrix, Illumina [62116689] (imputed)	N
1665	chr8	141628540	141628541	rs6578125	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	8q24.3		rs6578125-T	NR	1E-17		0.0342	[0.026-0.042] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
1665	chr8	141628540	141628541	rs6578125	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	8q24.3		rs6578125-T	NR	2E-18		0.0351	[0.027-0.043] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
1665	chr8	141628540	141628541	rs6578125	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	8q24.3	AGO2	rs6578125-T	0.9035104	5E-13		0.027153911	[0.02-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
1665	chr8	141628540	141628541	rs6578125	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	8q24.3	AGO2	rs6578125-T	0.9034787	4E-10		0.024149194	[0.017-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
1665	chr8	141628540	141628541	rs6578125	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	8q24.3	AGO2	rs6578125-T	0.9034952	4E-22		0.0347393	[0.028-0.042] unit decrease	Affymetrix [93095623] (imputed)	N
1665	chr8	141628540	141628541	rs6578125	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	8q24.3	AGO2	rs6578125-T	0.9034969	5E-24		0.037954833	[0.031-0.045] unit decrease	Affymetrix [93095623] (imputed)	N
1665	chr8	141628540	141628541	rs6578125	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q24.3	NR	rs6578125-T	0.906788	8E-25				Affymetrix, Illumina [24246363] (imputed)	N
1665	chr8	141628540	141628541	rs6578125	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	8q24.3	NR	rs6578125-T	0.905454	5E-28		0.034409	[0.028-0.041] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1665	chr8	141628540	141628541	rs6578125	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q24.3	NR	rs6578125-T	0.904932	2E-24				Affymetrix, Illumina [20825802] (imputed)	N
1665	chr8	141628540	141628541	rs6578125	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	8q24.3	NR	rs6578125-T	0.903653	8E-27		0.035175	[0.029-0.042] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
1665	chr8	141628540	141628541	rs6578125	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	8q24.3		rs6578125-?	NR	1E-26				NR [~ 8900000] (imputed)	N
1665	chr8	141631392	141631393	rs13277721	32986727	Kalra G	2020-09-28	PLoS Genet	Biological insights from multi-omic analysis of 31 genomic risk loci for adult hearing difficulty.	Age-related hearing impairment (MTAG)	330,759 European ancestry individuals	NA	8q24.3		rs13277721-?	NR	4E-10		6.248085	z score increase	Affymetrix [NR] (imputed)	N
1665	chr8	141633256	141633257	rs7831074	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Polyunsaturated fatty acid levels	115,006 European ancestry individuals	NA	8q24.3		rs7831074-C	0.240877	8E-9		0.0289646	[0.019-0.039] unit decrease	NR [11722792] (imputed)	N
1665	chr8	141633256	141633257	rs7831074	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-6 fatty acid levels	115,006 European ancestry individuals	NA	8q24.3		rs7831074-C	0.240877	4E-8		0.0276942	[0.018-0.038] unit decrease	NR [11722792] (imputed)	N
1665	chr8	141635060	141635061	rs7823699	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	8q24.3		rs7823699-G	NR	7E-13		0.0706	[0.051-0.09] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1665	chr8	141635060	141635061	rs7823699	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	8q24.3	EIF2C2	rs7823699-A	0.255166	4E-11		0.06977586	[0.049-0.09] unit increase	Affymetrix [7288503] (imputed)	N
1665	chr8	141635328	141635329	rs1962104	31168069	Ward J	2019-06-05	Mol Psychiatry	The genomic basis of mood instability: identification of 46 loci in 363,705 UK Biobank participants, genetic correlation with psychiatric disorders, and association with gene expression and function.	Mood instability	157,039 European ancestry cases, 206,666 European ancestry controls	NA	8q24.3	PTK2	rs1962104-?	NR	8E-12		0.00795086	[0.0057-0.0102] unit decrease	Affymetrix [NR] (imputed)	N
1665	chr8	141635328	141635329	rs1962104	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	8q24.3		rs1962104-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1665	chr8	141635328	141635329	rs1962104	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Experiencing mood swings	373,733 European ancestry individuals	NA	8q24.3	CHRAC1	rs1962104-T	0.449625	1E-10		6.42	z score decrease	NR [10847151] (imputed)	N
1665	chr8	141639261	141639262	rs11783023	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	8q24.3		rs11783023-?	NR	1E-11				NR [~ 8900000] (imputed)	N
1665	chr8	141641303	141641304	rs11785001	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	8q24.3	NR	rs11785001-C	0.283881	3E-10		0.013144	[0.009-0.0172] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
1665	chr8	141647290	141647291	rs11996715	34108613	Ivarsdottir EV	2021-06-09	Commun Biol	The genetic architecture of age-related hearing impairment revealed by genome-wide association analysis.	Age-related hearing impairment	121,934 European ancestry cases, 591,699 European ancestry controls	NA	8q24.3	AGO2	rs11996715-A	50.62	3E-9	(additive)	1.03	[NR]	Affymetrix, Illumina [46900000] (imputed)	N
1665	chr8	141654657	141654658	rs13264524	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q24.3	AGO2	rs13264524-A	0.517303	6E-9	(8 ms)	0.0322904	[0.021-0.043] unit decrease	Affymetrix [10000000] (imputed)	N
1665	chr8	141656154	141656155	rs11166986	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	8q24.3	PTK2	rs11166986-A	0.4904	4E-9		0.011794478	[0.0079-0.0157] unit increase	Affymetrix [11514654] (imputed)	N
1665	chr8	141656754	141656755	rs13266116	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	8q24.3		rs13266116-C	0.515	8E-13		0.008	[0.006-0.01] unit decrease	NR [NR] (imputed)	N
1665	chr8	141658360	141658361	rs6997840	33830993	Johnston KJA	2021-04-08	PLoS Genet	Sex-stratified genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	387,649 British ancestry individuals	NA	8q24.3	AGO2, PTK2	rs6997840-?	NR	3E-8			[NR]	NR [NR] (imputed)	N
1665	chr8	141658360	141658361	rs6997840	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	8q24.3	AGO2	rs6997840-T	0.393089	3E-8		5.53	z score decrease	NR [10847151] (imputed)	N
1665	chr8	141687199	141687200	rs13268718	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atrial fibrillation/atrial flutter	29,212 European ancestry cases, 400,539 European ancestry controls, 4,150 East Asian ancestry cases, 155,540 East Asian ancestry controls	NA	8q24.3		rs13268718-G	NR	2E-9		0.0563	[0.038-0.075] unit decrease	Affymetrix, Illumina [25830072] (imputed)	N
1666	chr8	141689037	141689038	rs73714723	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial squamous cell lung carcinoma	367 European ancestry cases, 31,563 European ancestry controls	NA	8q24.3	NR	rs73714723-A	0.004	7E-6		9.94	[3.65-27.08]	Illumina [7959153] (imputed)	N
1666	chr8	141700116	141700117	rs13266066	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	8q24.3	NR	rs13266066-T	0.491	1E-10		0.00708517	[0.0049-0.0092] unit increase	NR [9732723] (imputed)	N
1666	chr8	141738586	141738587	rs11997161	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	8q24.3	NR	rs11997161-T	0.482346	3E-8		0.0106387	[0.0069-0.0144] unit decrease	Affymetrix [15000001]	N
1666	chr8	141740867	141740868	rs6994744	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	8q24.3	PTK2	rs6994744-C	0.495	1E-9		1.04	[1.03-1.05]	Illumina [34740186] (imputed)	N
1666	chr8	141746323	141746324	rs4355822	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	8q24.3	PTK2	rs4355822-A	0.51	2E-10	(EA)	1.05	[1.03-1.07]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1666	chr8	141762658	141762659	rs6993266	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	8q24.3	PTK2	rs6993266-A	0.54	1E-9		1.05	[1.03-1.06]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1667	chr8	141826738	141826739	rs10090774	27595289	Goyal RK	2016-09-05	Bone Marrow Transplant	Novel HLA-DP region susceptibility loci associated with severe acute GvHD.	Acute graft versus host disease in bone marrow transplantation (recipient effect)	291 European ancestry recipients with acute graft versus host disease, 288 European ancestry recipients without acute graft versus host disease	NA	8q24.3	PTK2	rs10090774-?		4E-7				Affymetrix [905761]	N
1667	chr8	141854955	141854956	rs13256088	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	8q24.3		rs13256088-?	NR	6E-8				NR [~ 8900000] (imputed)	N
1667	chr8	141858619	141858620	rs10087782	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	8q24.3	PTK2	rs10087782-T	0.448	1E-15		0.1211	[0.092-0.151] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1667	chr8	141876201	141876202	rs72683785	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	8q24.3	PTK2	rs72683785-T	0.058707	5E-10		0.029464087	[0.02-0.039] unit decrease	Affymetrix [93095623] (imputed)	N
1667	chr8	141876201	141876202	rs72683785	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	8q24.3		rs72683785-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1667	chr8	141876286	141876287	rs72683786	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	8q24.3	PTK2	rs72683786-G	0.0978	2E-9		0.03577847	[0.024-0.047] unit increase	Affymetrix [~ 2500000] (imputed)	N
1667	chr8	141932461	141932462	rs13253989	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	8q24.3		rs13253989-?	NR	7E-8				NR [~ 8900000] (imputed)	N
1668	chr8	141988684	141988685	rs28768427	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	8q24.3	PTK2	rs28768427-G	0.480232	1E-8		0.0122459	[0.008-0.0165] unit decrease	Affymetrix [NR] (imputed)	N
1668	chr8	141988684	141988685	rs28768427	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	8q24.3	PTK2	rs28768427-G	0.480244	3E-8		0.0118358	[0.0076-0.016] unit decrease	Affymetrix [NR] (imputed)	N
1668	chr8	141992777	141992778	rs11780023	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	8q24.3	Intergenic	rs11780023-T	0.5028	3E-14	(MTAG)	0.0126	[0.0095-0.0157] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1668	chr8	141992777	141992778	rs11780023	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	8q24.3	Intergenic	rs11780023-T	0.5028	2E-11		0.0152	[0.011-0.02] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1668	chr8	141992777	141992778	rs11780023	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	8q24.3		rs11780023-T	0.5051	1E-9		0.0085	[0.0058-0.0112] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1668	chr8	141992777	141992778	rs11780023	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	8q24.3	Intergenic	rs11780023-T	0.5051	6E-14	(MTAG)	0.0098	[0.0073-0.0123] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1668	chr8	141998764	141998765	rs12334478	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	8q24.3	PTK2	rs12334478-C	0.5036	2E-17		0.0161	[0.012-0.02] unit increase	Affymetrix [18391927] (imputed)	N
1668	chr8	142006197	142006198	rs10106406	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	8q24.3	PTK2	rs10106406-C	0.45	1E-9		0.4	[0.26-0.54] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1668	chr8	142006197	142006198	rs10106406	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	8q24.3	PTK2	rs10106406-C	0.4325	3E-9		0.4086	[0.27-0.54] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1668	chr8	142006197	142006198	rs10106406	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	8q24.3	Intergenic	rs10106406-C	0.4273	1E-9	(MTAG)	0.011	[0.0075-0.0145] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1668	chr8	142006197	142006198	rs10106406	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	8q24.3	Intergenic	rs10106406-C	0.4246	2E-9	(MTAG)	0.014	[0.0095-0.0185] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1668	chr8	142017876	142017877	rs10088133	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	8q24.3		rs10088133-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1668	chr8	142019262	142019263	rs189726638	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	8q24.3	NR	rs189726638-?	NR	6E-6		1.01617	[0.57-1.46] unit increase	NR [13958389] (imputed)	N
1668	chr8	142021654	142021655	rs10103810	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Deep white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	8q24.3	PTK2	rs10103810-A	0.6247	1E-6		0.0297	[0.018-0.042] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1668	chr8	142039585	142039586	rs13268108	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	8q24.3	NR	rs13268108-?	NR	3E-9	(left cerebellum exterior)			NR [9227495] (imputed)	N
1668	chr8	142039585	142039586	rs13268108	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	8q24.3	NR	rs13268108-?	NR	2E-8	(cerebellar vermal lobules I V)			NR [9227495] (imputed)	N
1668	chr8	142039585	142039586	rs13268108	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	8q24.3	NR	rs13268108-?	NR	2E-10	(right cerebellum exterior)			NR [9227495] (imputed)	N
1668	chr8	142040037	142040038	rs6984592	35079123	Chambers T	2022-01-25	Mol Psychiatry	Genetic common variants associated with cerebellar volume and their overlap with mental disorders: a study on 33,265 individuals from the UK-Biobank.	Total cerebellar volume (excluding Crus I vermis)	33,265 European ancestry individuals	NA	8q24.3		rs6984592-A	NR	1E-9		0.0335	[0.023-0.044] unit increase	Affymetrix [6193476] (imputed)	N
1668	chr8	142042869	142042870	rs7834152	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	8q24.3	NR	rs7834152-?		2E-9				NR [7428630] (imputed)	N
1668	chr8	142056936	142056937	rs184801383	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	K10 abundance in stool	5,959 Finnish ancestry individuals	NA	8q24.3		rs184801383-T	0.012719	5E-8		0.295667	[0.19-0.4] unit increase	Illumina [7980478] (imputed)	N
1669	chr8	142104943	142104944	rs4961252	28394258	Wild PS	2017-04-10	J Clin Invest	Large-scale genome-wide analysis identifies genetic variants associated with cardiac structure and function.	Isovolumetric relaxation time	21,852 European ancestry individuals	14,787 European ancestry individuals	8q24.3	DENND3	rs4961252-A	0.62	5E-8		0.002	[0.0012-0.0028] unit decrease	Affymetrix, Illumina [at least 283291] (imputed)	N
1669	chr8	142104943	142104944	rs4961252	21502966	Weber F	2011-04-19	Pharmacogenomics J	Single-nucleotide polymorphisms in HLA- and non-HLA genes associated with the development of antibodies to interferon-? therapy in multiple sclerosis patients.	Response to interferon beta therapy	178 European ancestry antibody-positive individuals, 184 European ancestry antibody-negative individuals	350 European ancestry antibody-positive individuals, 468 European ancestry antibody-negative individuals	8q24.3	DENND3, PTK2	rs4961252-G	0.40	3E-8		0.23	[NR] unit increase	Illumina [~ 317000]	N
1669	chr8	142154695	142154696	rs62522179	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	8q24.3	DENND3	rs62522179-C	0.011	4E-6		0.236	NR unit decrease	Illumina [NR] (imputed)	N
1669	chr8	142161063	142161064	rs3816063	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	8q24.3	DENND3	rs3816063-A	0.242	2E-6	(Diet protein )	0.03	[NR] %energy increase	Illumina [899892]	N
1669	chr8	142200205	142200205	rs144741369	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	8q24.3	DENND3	rs144741369-TCATGTTTG	0.527687	2E-17		0.019482942	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1669	chr8	142200466	142200467	rs1045303	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	8q24.3		rs1045303-?	NR	5E-10				NR [~ 8900000] (imputed)	N
1669	chr8	142205903	142205904	rs3739222	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	8q24.3		rs3739222-G	NR	1E-15		0.0178	[0.013-0.022] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
1669	chr8	142212481	142212482	rs143870415	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	8q24.3		rs143870415-T	0.39	1E-20		9.3	z score increase	Affymetrix [9061022] (imputed)	N
1669	chr8	142212481	142212482	rs143870415	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	8q24.3	NR	rs143870415-T	0.4022	5E-17				NR [9056863] (imputed)	N
1670	chr8	142213996	142213997	rs7814873	33568662	Dashti HS	2021-02-10	Nat Commun	Genetic determinants of daytime napping and effects on cardiometabolic health.	Daytime nap	452,633 European ancestry individuals	541,333 European ancestry individuals	8q24.3	SLC45A4, DENND3	rs7814873-C		2E-9		0.0054	[0.0036-0.0072] unit increase	Affymetrix [13304133] (imputed)	N
1670	chr8	142214380	142214381	rs11775886	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	8q24.3	SLC45A4	rs11775886-G	0.493136	5E-27		0.024309855	[0.02-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
1670	chr8	142214380	142214381	rs11775886	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	8q24.3	SLC45A4	rs11775886-G	0.493084	1E-22		0.021944247	[0.018-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1670	chr8	142214380	142214381	rs11775886	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	8q24.3	SLC45A4	rs11775886-G	0.493078	3E-22		0.021747513	[0.017-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1670	chr8	142215981	142215982	rs1865249	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	8q24.3	DENND3, SLC45A4	rs1865249-?		5E-10				Affymetrix, Illumina [NR] (imputed)	N
1670	chr8	142216561	142216561	rs57306227	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	8q24.3	SLC45A4	rs57306227-AC	0.311503	4E-12		0.016878705	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1670	chr8	142217114	142217115	rs7007986	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	8q24.3	NR	rs7007986-G	0.3974	2E-14				NR [9056863] (imputed)	N
1670	chr8	142217114	142217115	rs7007986	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	8q24.3	SLC45A4	rs7007986-A	0.602186	4E-24		0.022972237	[0.019-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1670	chr8	142217114	142217115	rs7007986	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q24.3	NR	rs7007986-A	0.638813	4E-26				Affymetrix, Illumina [23472807] (imputed)	N
1670	chr8	142217114	142217115	rs7007986	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	8q24.3	NR	rs7007986-A	0.601181	9E-28		0.022001	[0.018-0.026] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1670	chr8	142227591	142227592	rs10107024	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	8q24.3		rs10107024-T	0.4	4E-26		10.58	z score increase	Affymetrix [9061022] (imputed)	N
1670	chr8	142227853	142227854	rs9324542	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	8q24.3		rs9324542-T	0.4	3E-12		6.98	z score increase	Affymetrix [9061022] (imputed)	N
1670	chr8	142228078	142228096	rs201532280	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	8q24.3		rs201532280-A	NR	3E-28		0.0232	[0.019-0.027] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
1670	chr8	142228808	142228809	rs753779	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	8q24.3		rs753779-C	NR	2E-15		0.0184	[0.014-0.023] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
1670	chr8	142228908	142228909	rs753778	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	8q24.3	SLC45A4	rs753778-A	0.2935	3E-9		0.02332289	[0.016-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1670	chr8	142228908	142228909	rs753778	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	8q24.3	SLC45A4	rs753778-A	0.2935	1E-10		0.02530238	[0.018-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1670	chr8	142228908	142228909	rs753778	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	8q24.3	SLC45A4	rs753778-A	0.2935	5E-10		0.02442285	[0.017-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1670	chr8	142229144	142229145	rs3739235	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	8q24.3	SLC45A4	rs3739235-G	0.6	5E-26		10.5	z-score increase	Affymetrix [4314223] (imputed)	N
1670	chr8	142232255	142232256	rs59918340	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	8q24.3	SLC45A4	rs59918340-G	0.477	8E-10		0.0217991	[0.015-0.029] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1670	chr8	142235357	142235358	rs6987335	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	8q24.3		rs6987335-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1670	chr8	142235996	142235997	rs7001864	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	8q24.3	SLC45A4	rs7001864-C	0.517389	1E-11		0.015146524	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1670	chr8	142237397	142237398	rs12547917	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	8q24.3	NR	rs12547917-C	NR	3E-17		0.0206	[0.016-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
1670	chr8	142239317	142239318	rs10087637	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	8q24.3	SLC45A4	rs10087637-A	0.63747	1E-10		0.014885231	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
1670	chr8	142245463	142245464	rs10875468	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	8q24.3	SLC45A4	rs10875468-C	0.9068424	1E-11		0.025847577	[0.018-0.033] unit increase	Affymetrix [93095623] (imputed)	N
1670	chr8	142247978	142247979	rs12543725	31097437	Plotnikov D	2019-05-16	Br J Ophthalmol	Association between birth weight and refractive error in adulthood: a Mendelian randomisation study.	Birth weight	188,039 European ancestry individuals	NA	8q24.3	NR	rs12543725-A	0.41	2E-9		0.02	[0.014-0.026] z score decrease	Affymetrix [up to 10400000] (imputed)	N
1670	chr8	142247978	142247979	rs12543725	27680694	Horikoshi M	2016-10-13	Nature	Genome-wide associations for birth weight and correlations with adult disease.	Birth weight	133,903 European ancestry individuals, 6,635 African American individuals, 420 Turkish ancestry individuals, 365 Moroccan ancestry individuals, 395 Surinamese ancestry individuals, 840 Chinese ancestry individuals.	9,799 European ancestry individuals, 1,449 Filipino ancestry individuals.	8q24.3	SLC45A4	rs12543725-G	0.6	2E-9		0.0223	[0.015-0.03] unit increase	Affymetrix, Illumina [at least 22434434] (imputed)	N
1670	chr8	142248453	142248454	rs55846720	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	8q24.3		rs55846720-A	NR	9E-10		0.0128	[0.0087-0.0169] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
1670	chr8	142248453	142248454	rs55846720	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	8q24.3	NR	rs55846720-A	NR	1E-10		0.0162	[0.011-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
1670	chr8	142248453	142248454	rs55846720	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	8q24.3	NR	rs55846720-A	NR	8E-10		0.0147	[0.01-0.0194] unit decrease	Affymetrix [9000000] (imputed)	N
1670	chr8	142252579	142252580	rs13257363	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	8q24.3	SLC45A4	rs13257363-G	0.590719	2E-11		0.01757	[0.012-0.023] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1670	chr8	142253368	142253369	rs12675687	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q24.3	NR	rs12675687-C	0.820133	7E-12				Affymetrix, Illumina [17210439] (imputed)	N
1670	chr8	142257377	142257378	rs6982240	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	8q24.3	NR	rs6982240-?	NR	7E-7		0.0454	[0.027-0.063] unit increase	Illumina [at least 560000] (imputed)	N
1670	chr8	142257580	142257581	rs138530454	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8q24.3	NR	rs138530454-G	0.01394	2E-10	(MYO1B)	0.1523	NR unit increase	Illumina [1671387] (imputed)	N
1670	chr8	142257699	142257700	rs10088627	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	8q24.3	SLC45A4	rs10088627-A	0.41573	4E-13		0.016615013	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1670	chr8	142257699	142257700	rs10088627	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	8q24.3	SLC45A4	rs10088627-A	0.415743	2E-13		0.016782442	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1670	chr8	142269213	142269214	rs892362	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	8q24.3	SLC45A4	rs892362-T	0.310846	4E-18		0.021042865	[0.016-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1670	chr8	142274214	142274215	rs62524180	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	8q24.3		rs62524180-C	0.953	4E-9				Affymetrix [10369434] (imputed)	N
1670	chr8	142279411	142279412	rs6992286	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	8q24.3		rs6992286-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1670	chr8	142284824	142284825	rs28608203	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	8q24.3	SLC45A4	rs28608203-T	0.176334	6E-15		0.022827813	[0.017-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1670	chr8	142297903	142297904	rs55925913	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	8q24.3	SLC45A4, RP11-10J21.5	rs55925913-A	0.259223	6E-28		0.028786069	[0.024-0.034] unit increase	Affymetrix [93095623] (imputed)	N
1670	chr8	142298178	142298179	rs7000279	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	8q24.3	LOC105375787	rs7000279-C	0.736828	4E-10		0.0131432	[0.009-0.0173] unit decrease	NR [13737936] (imputed)	N
1670	chr8	142298178	142298179	rs7000279	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	8q24.3		rs7000279-?	NR	3E-10				NR [~ 8900000] (imputed)	N
1670	chr8	142298178	142298179	rs7000279	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	8q24.3		rs7000279-?	NR	8E-12		0.0148644	[0.01-0.02] unit decrease	Affymetrix [20259828] (imputed)	N
1670	chr8	142299087	142299088	rs33955089	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	8q24.3	NR	rs33955089-G	NR	2E-10		0.0182	[0.013-0.024] unit increase	Affymetrix [9000000] (imputed)	N
1670	chr8	142300314	142300315	rs7827290	21926972	Sklar P	2011-09-18	Nat Genet	Large-scale genome-wide association analysis of bipolar disorder identifies a new susceptibility locus near ODZ4.	Bipolar disorder	7,481 European ancestry cases, 9,250 European ancestry controls	4,496 European ancestry cases, 42,422 European ancestry controls	8q24.3	LOC731779, GPR20	rs7827290-G	NR	9E-6		1.1	[NR]	Affymetrix, Illumina [2415422] (imputed)	N
1670	chr8	142302023	142302024	rs12677618	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	8q24.3	SLC45A4, RP11-10J21.5	rs12677618-T	0.2611	3E-11		0.02776526	[0.02-0.036] unit increase	Affymetrix [~ 2500000] (imputed)	N
1670	chr8	142305765	142305766	rs7014099	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	8q24.3		rs7014099-?	NR	3E-10				NR [~ 8900000] (imputed)	N
1670	chr8	142322895	142322896	rs7000170	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	8q24.3		rs7000170-A	NR	2E-16		0.0168	[0.013-0.021] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1670	chr8	142322895	142322896	rs7000170	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	8q24.3	NR	rs7000170-A	0.291195	5E-23		0.020991	[0.017-0.025] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1670	chr8	142324924	142324925	rs2117149	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	8q24.3		rs2117149-C	0.517902	5E-13		0.016642334	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1670	chr8	142328718	142328719	rs13261848	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	8q24.3	intergenic	rs13261848-T	0.3614	7E-15		0.02898548	[0.022-0.036] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1670	chr8	142329459	142329460	rs34634548	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	8q24.3		rs34634548-A	NR	3E-31		0.0289	[0.024-0.034] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1670	chr8	142329459	142329460	rs34634548	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	8q24.3		rs34634548-A	NR	9E-32		0.0291	[0.024-0.034] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
1670	chr8	142329459	142329460	rs34634548	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	8q24.3	NR	rs34634548-A	0.358286	4E-33		0.027961524	[0.023-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
1670	chr8	142329459	142329460	rs34634548	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	8q24.3		rs34634548-A	0.3583	4E-35		0.028552847	[0.024-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
1670	chr8	142329459	142329460	rs34634548	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	8q24.3		rs34634548-?	NR	1E-39				NR [~ 8900000] (imputed)	N
1670	chr8	142332777	142332778	rs10107504	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	8q24.3		rs10107504-G	0.639	2E-18				Affymetrix [10369434] (imputed)	N
1670	chr8	142333424	142333425	rs10875469	27043157	Keers R	2016-04-05	Psychother Psychosom	A Genome-Wide Test of the Differential Susceptibility Hypothesis Reveals a Genetic Predictor of Differential Response to Psychological Treatments for Child Anxiety Disorders.	Discordance in emotional problems in monozygotic twins	up to 1,026 child monozygotic twin pairs	NA	8q24.3	GPR20	rs10875469-?		9E-6		0.2144	[NR] unit decrease	Affymetrix [679050]	N
1670	chr8	142337733	142337734	rs6985508	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q24.3	NR	rs6985508-A	0.369475	5E-41				Affymetrix, Illumina [24649327] (imputed)	N
1670	chr8	142337733	142337734	rs6985508	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	8q24.3	NR	rs6985508-A	0.357998	2E-39		0.026558	[0.023-0.031] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1670	chr8	142337733	142337734	rs6985508	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q24.3	NR	rs6985508-A	0.363379	1E-39				Affymetrix, Illumina [23114412] (imputed)	N
1670	chr8	142337733	142337734	rs6985508	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	8q24.3	NR	rs6985508-A	0.357978	3E-39		0.027376	[0.023-0.031] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
1670	chr8	142337789	142337790	rs6986779	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	8q24.3	RP11-10J21.6	rs6986779-T	0.3592	5E-15		0.02933897	[0.022-0.037] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1670	chr8	142337789	142337790	rs6986779	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	8q24.3	RP11-10J21.6	rs6986779-T	0.3592	1E-14		0.02889643	[0.022-0.036] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1670	chr8	142337789	142337790	rs6986779	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	8q24.3	RP11-10J21.6	rs6986779-T	0.3592	1E-14		0.02895393	[0.022-0.036] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1670	chr8	142337789	142337790	rs6986779	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	8q24.3	RP11-10J21.6	rs6986779-T	0.3592	1E-14		0.02908365	[0.022-0.036] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1670	chr8	142337789	142337790	rs6986779	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	8q24.3	RP11-10J21.6	rs6986779-T	0.3592	6E-15		0.02929508	[0.022-0.037] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1670	chr8	142338551	142338552	rs13276309	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	8q24.3	RP11-10J21.6	rs13276309-G	0.358586	3E-9		0.013760344	[0.0092-0.0183] unit decrease	Affymetrix [93095623] (imputed)	N
1670	chr8	142339762	142339763	rs11984494	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	8q24.3	SLC45A4, LOC731779	rs11984494-G	0.697174	1E-16	(N1,N12-diacetylspermine)	0.205	[0.16-0.25] unit decrease	Illumina [13039987] (imputed)	N
1671	chr8	142353769	142353770	rs4072669	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	8q24.3	CTD-3064M3.1	rs4072669-C	0.289317	2E-17		0.02121236	[0.016-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1671	chr8	142355493	142355494	rs7462429	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	8q24.3		rs7462429-T	0.35	2E-9				Affymetrix [10369434] (imputed)	N
1671	chr8	142358864	142358865	rs4961372	33594131	Donati G	2021-02-16	Sci Rep	Evidence for specificity of polygenic contributions to attainment in English, maths and science during adolescence.	Academic attainment (maths)	6,017 European ancestry adolescents	NA	8q24.3	NR	rs4961372-G	NR	9E-6		0.128	[0.071-0.185] unit decrease	Illumina [6319684] (imputed)	N
1671	chr8	142359549	142359550	rs7386474	20889312	Wang KS	2010-10-01	Schizophr Res	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	8q24.3	NR	rs7386474-?	NR	3E-6		1.2301	[NR]	Affymetrix [722112]	N
1671	chr8	142362390	142362391	rs9657468	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	8q24.3	GPR20	rs9657468-G	0.33423	8E-8		0.014902	[0.0095-0.0203] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1671	chr8	142364163	142364164	rs60772015	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	8q24.3		rs60772015-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1671	chr8	142367086	142367087	rs34591516	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Systolic blood pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	8q24.3	GPR20	rs34591516-T	0.0587	1E-9		0.5807	[0.39-0.77] mmHg increase	Illumina [242296]	N
1671	chr8	142367086	142367087	rs34591516	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Diastolic blood pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	8q24.3	GPR20	rs34591516-T	0.0539	5E-7		0.294	mmHg increase	Illumina [242296]	N
1671	chr8	142370861	142370862	rs10090104	27002377	Irvin MR	2016-07-01	Pharmacogenet Genomics	A genome-wide study of lipid response to fenofibrate in Caucasians: a combined analysis of the GOLDN and ACCORD studies.	Response to fenofibrate (total cholesterol levels)	1,594 European ancestry individuals	350 Hispanic individuals, 138 African American individuals	8q24.3	GPR20	rs10090104-G	0.83	1E-6	(European)	0.01781	[0.011-0.025] unit decrease	Affymetrix [6982258] (imputed)	N
1671	chr8	142374303	142374304	rs56251106	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	8q24.3		rs56251106-G	NR	2E-14		0.0121	[0.009-0.0152] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1671	chr8	142375072	142375073	rs78192203	28498854	Liang J	2017-05-12	PLoS Genet	Single-trait and multi-trait genome-wide association analyses identify novel loci for blood pressure in African-ancestry populations.	Systolic blood pressure	Up to 31,155 African individuals	Up to 4,187 African individuals, up to 14,016 Korean ancestry individuals, up to 23,914 European ancestry individuals, up to 12,278 Hispanic individuals	8q24.3	GPR20	rs78192203-T	NR	3E-6		0.9831	[0.57-1.40] unit decrease	Affymetrix, Illumina [at least 30072738] (imputed)	N
1671	chr8	142375072	142375073	rs78192203	28498854	Liang J	2017-05-12	PLoS Genet	Single-trait and multi-trait genome-wide association analyses identify novel loci for blood pressure in African-ancestry populations.	Diastolic blood pressure	Up to 31,155 African individuals	Up to 4,187 African individuals, up to 14,016 Korean ancestry individuals, up to 23,914 European ancestry individuals, up to 12,278 Hispanic individuals	8q24.3	GPR20	rs78192203-T	NR	4E-11		0.8403	[0.59-1.09] unit decrease	Affymetrix, Illumina [at least 30072738] (imputed)	N
1671	chr8	142375072	142375073	rs78192203	28498854	Liang J	2017-05-12	PLoS Genet	Single-trait and multi-trait genome-wide association analyses identify novel loci for blood pressure in African-ancestry populations.	Blood pressure traits (multi-trait analysis)	Up to 31,155 African individuals	Up to 4,187 African individuals, up to 14,016 Korean ancestry individuals, up to 23,914 European ancestry individuals, up to 12,278 Hispanic individuals	8q24.3	GPR20	rs78192203-T	NR	2E-8	(Het)			Affymetrix, Illumina [at least 30072738] (imputed)	N
1671	chr8	142375072	142375073	rs78192203	28498854	Liang J	2017-05-12	PLoS Genet	Single-trait and multi-trait genome-wide association analyses identify novel loci for blood pressure in African-ancestry populations.	Blood pressure traits (multi-trait analysis)	Up to 31,155 African individuals	Up to 4,187 African individuals, up to 14,016 Korean ancestry individuals, up to 23,914 European ancestry individuals, up to 12,278 Hispanic individuals	8q24.3	GPR20	rs78192203-T	NR	1E-7	(Hom)			Affymetrix, Illumina [at least 30072738] (imputed)	N
1671	chr8	142382374	142382375	rs145121262	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid respiratory support vs population)	495 European ancestry cases, 680,440 European ancestry controls, 102 Hispanic or Latin American cases, 94,330 Hispanic or Latin American controls, 39 Black or African American cases, 22,410 Black or African American controls	NA	8q24.3		rs145121262-?	NR	8E-6		0.6713911	[0.38-0.96] unit decrease	Illumina [9842460] (imputed)	N
1671	chr8	142389953	142389954	rs111409240	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Systolic blood pressure	11,380 African American individuals, 21,549 Hispanic/Latino individuals, 1,086 Asian ancestry individuals, 636 Native American ancestry individuals, 782 individuals	NA	8q24.3	GPR20	rs111409240-?	NR	7E-9		1.581	[1.05-2.12] unit decrease	Illumina [32101933] (imputed)	N
1671	chr8	142389953	142389954	rs111409240	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Systolic blood pressure	11,380 African American individuals, 21,549 Hispanic/Latino individuals, 1,086 Asian ancestry individuals, 636 Native American ancestry individuals, 782 individuals	NA	8q24.3	GPR20	rs111409240-?	NR	5E-7	(Hispanic/Latino)	2.301758	[1.4-3.2] unit decrease	Illumina [32101933] (imputed)	N
1671	chr8	142393458	142393458	rs111926069	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	8q24.3		rs111926069-TAAACAAAC	0.192455	5E-10		0.018352188	[0.013-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1671	chr8	142393458	142393458	rs111926069	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	8q24.3	NR	rs111926069-I	0.192366	3E-14		0.019787	[0.015-0.025] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1671	chr8	142394604	142394605	rs55793313	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q24.3	NR	rs55793313-C	0.368233	6E-24				Affymetrix, Illumina [24588908] (imputed)	N
1671	chr8	142396044	142396045	rs56401210	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	8q24.3		rs56401210-G	0.456037	3E-12		0.0148591	[0.011-0.019] unit increase	Illumina [13479295] (imputed)	N
1671	chr8	142396379	142396379	rs76411146	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	8q24.3	GPR20, PTP4A3	rs76411146-?	NR	9E-10		0.018419547	[0.013-0.024] unit increase	Illumina [27896057] (imputed)	N
1671	chr8	142396480	142396481	rs76735299	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	8q24.3		rs76735299-?	NR	4E-11				NR [~ 8900000] (imputed)	N
1671	chr8	142396480	142396481	rs76735299	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	8q24.3	GPR20, PTP4A3	rs76735299-G		4E-8		0.429	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1671	chr8	142396480	142396481	rs76735299	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	8q24.3	GPR20, PTP4A3	rs76735299-G		1E-7		0.249	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1671	chr8	142441641	142441642	rs12549801	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	8q24.3		rs12549801-G	NR	7E-9		0.0325	[0.022-0.043] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1671	chr8	142441641	142441642	rs12549801	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	8q24.3	PTP4A3	rs12549801-A	0.233986	1E-8		0.040760934	[0.027-0.055] unit decrease	Affymetrix [7288503] (imputed)	N
1671	chr8	142452224	142452225	rs4074174	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	8q24.3	NR	rs4074174-C	0.316	6E-6	(IFNalpha_CXCL10_of_CD56brightCD16n)			Illumina [5084123] (imputed)	N
1671	chr8	142458052	142458053	rs6578185	28881265	Sobalska-Kwapis M	2017-09-01	Eur J Obstet Gynecol Reprod Biol	New variants near RHOJ and C2, HLA-DRA region and susceptibility to endometriosis in the Polish population-The genome-wide association study.	Endometriosis	171 European ancestry cases, 2,934 European ancestry controls	NA	8q24.3	NR	rs6578185-A	0.4932	2E-6		1.805706	[1.41-2.31]	Illumina [274400]	N
1671	chr8	142459031	142459032	rs11167062	29160301	Fabbri C	2017-11-21	Pharmacogenomics J	New insights into the pharmacogenomics of antidepressant response from the GENDEP and STAR*D studies: rare variant analysis and high-density imputation.	Response to antidepressants (symptom improvement)	2,145 European ancestry individuals	NA	8q24.3	MROH5, PTP4A3	rs11167062-?	NR	3E-6		0.0448	NR unit increase	Affymetrix, Illumina [7062950] (imputed)	N
1671	chr8	142466820	142466821	rs11777747	23870195	Wojczynski MK	2013-07-19	BMC Med Genet	Genetics of coronary artery calcification among African Americans, a meta-analysis.	Coronary artery calcification	5,823 African American individuals	9,992 European ancestry individuals	8q24.3	FLJ43860	rs11777747-T	0.03	8E-6	(AA)	0.68	[0.39-0.97] unit decrease	Affymetrix, Illumina [up to 2727966] (imputed)	N
1672	chr8	142504437	142504438	rs11167066	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8q24.3	NR	rs11167066-A	0.01568	5E-9	(PSMD3)	0.04591	NR unit decrease	Illumina [1671387] (imputed)	N
1672	chr8	142504437	142504438	rs11167066	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8q24.3	NR	rs11167066-A	0.01568	5E-10	(GALE)	0.1594	NR unit decrease	Illumina [1671387] (imputed)	N
1672	chr8	142540924	142540925	rs7837045	22747683	Eriksson N	2012-06-30	BMC Med Genet	Genetic variants associated with breast size also influence breast cancer risk.	Breast size	16,175 European ancestry female individuals	NA	8q24.3	FLJ43860	rs7837045-A	0.22	5E-6		0.092	[0.053-0.131] cup size decrease	Illumina [7422970] (imputed)	N
1672	chr8	142556804	142556805	rs1566080	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	8q24.3	FLJ43860	rs1566080-A	0.22	6E-6	(Total antioxidants )	0.03	[NR] mM increase	Illumina [899892]	N
1672	chr8	142580647	142580648	rs876096	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs non-severe)	86 Finnish ancestry male severe erosion cases, 50 Finnish ancestry female severe erosion cases, 817 Finnish ancestry male non-severe erosion controls, 991 Finnish ancestry female non-severe erosion controls	NA		NR	rs876096-?	NR	5E-6				Illumina [NR] (imputed)	N
1672	chr8	142582849	142582850	rs875056	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs none or mild)	136 Finnish ancestry severe erosion cases, 1011 Finnish ancestry mild or no erosion controls	NA	8q24.3	MROH5, PTP4A3	rs875056-?	NR	5E-6				Illumina [NR] (imputed)	N
1672	chr8	142582849	142582850	rs875056	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs non-severe)	86 Finnish ancestry male severe erosion cases, 50 Finnish ancestry female severe erosion cases, 817 Finnish ancestry male non-severe erosion controls, 991 Finnish ancestry female non-severe erosion controls	NA	8q24.3	MROH5, PTP4A3	rs875056-?	NR	1E-6		2.5	[1.71-3.80]	Illumina [NR] (imputed)	N
1672	chr8	142583186	142583187	rs730911	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	8q24.3	AC138647.1	rs730911-C	0.2655	8E-6		0.0361	[0.02-0.052] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1672	chr8	142590177	142590178	rs77754829	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs non-severe)	86 Finnish ancestry male severe erosion cases, 50 Finnish ancestry female severe erosion cases, 817 Finnish ancestry male non-severe erosion controls, 991 Finnish ancestry female non-severe erosion controls	NA	8q24.3	NR	rs77754829-?	NR	4E-6				Illumina [NR] (imputed)	N
1672	chr8	142591009	142591010	rs76358579	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs non-severe)	86 Finnish ancestry male severe erosion cases, 50 Finnish ancestry female severe erosion cases, 817 Finnish ancestry male non-severe erosion controls, 991 Finnish ancestry female non-severe erosion controls	NA	8q24.3	NR	rs76358579-?	NR	6E-6				Illumina [NR] (imputed)	N
1673	chr8	142611970	142611971	rs13266268	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	8q24.3		rs13266268-T	0.3545	3E-10		50.726883	z score increase	NR [6814003]	N
1673	chr8	142611970	142611971	rs13266268	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	8q24.3	ENSG00000226490	rs13266268-?	NR	6E-16		0.017007658	[0.013-0.021] unit decrease	NR [7306098]	N
1673	chr8	142611970	142611971	rs13266268	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	8q24.3	ENSG00000226490	rs13266268-T	NR	2E-9		0.018979419	[0.013-0.025] unit decrease	Affymetrix [NR]	N
1673	chr8	142615221	142615222	rs11787216	30804558	Grove J	2019-02-25	Nat Genet	Identification of common genetic risk variants for autism spectrum disorder.	Autism spectrum disorder	18,381 European ancestry cases, 27,969 European ancestry controls	2,119 European ancestry cases, 142,379 European ancestry controls	8q24.3	MROH5	rs11787216-C	0.636	4E-6		1.0638298	[NR]	Illumina [9112387] (imputed)	N
1673	chr8	142615221	142615222	rs11787216	30804558	Grove J	2019-02-25	Nat Genet	Identification of common genetic risk variants for autism spectrum disorder.	Autism and educational attainment (MTAG)	18,381 European ancestry autism cases, 27,969 European ancestry controls, 328,917 individuals with educational attainment data	NA	8q24.3		rs11787216-T	0.364	2E-9		0.058	[0.038-0.078] unit decrease	Illumina [NR] (imputed)	N
1673	chr8	142617095	142617096	rs11782074	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	8q24.3		rs11782074-T	NR	6E-14		0.0143	[0.011-0.018] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1673	chr8	142617095	142617096	rs11782074	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	8q24.3		rs11782074-T	NR	4E-15		0.017	[0.013-0.021] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1673	chr8	142617095	142617096	rs11782074	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		8q24.3	AC138647.1	rs11782074-G	0.616385	1E-11		0.00971808	[0.0069-0.0125] unit decrease	Affymetrix [12370749]	N
1673	chr8	142617095	142617096	rs11782074	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	8q24.3		rs11782074-?	NR	6E-11				NR [~ 8900000] (imputed)	N
1673	chr8	142617260	142617261	rs746839	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	8q24.3		rs746839-G	NR	2E-8		0.0133	[0.0086-0.018] unit increase	Affymetrix, Illumina [20529698] (imputed)	N
1673	chr8	142617260	142617261	rs746839	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	8q24.3	NA	rs746839-G		3E-13		0.014136	[0.01-0.018] unit decrease	Illumina [13288253] (imputed)	N
1673	chr8	142617260	142617261	rs746839	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	8q24.3	MROH5	rs746839-?		3E-8				NR [6786993] (imputed)	N
1673	chr8	142617260	142617261	rs746839	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	8q24.3	NR	rs746839-G	0.365292334545913	6E-9		0.012650917	[0.0084-0.0169] unit decrease	NR [NR]	N
1673	chr8	142617260	142617261	rs746839	30279531	Baselmans BML	2018-10-02	Sci Rep	A genetic perspective on the relationship between eudaimonic -and hedonic well-being.	Hedonic well-being	221,575 British ancestry individuals	NA	8q24.3	NR	rs746839-G	0.38	1E-8		0.018	[0.012-0.024] unit decrease	Affymetrix [~ 8600000] (imputed)	N
1673	chr8	142617260	142617261	rs746839	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	8q24.3	Intergenic	rs746839-C	0.6385	1E-17	(MTAG)	0.0147	[0.011-0.018] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1673	chr8	142617260	142617261	rs746839	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	8q24.3	Intergenic	rs746839-C	0.6385	4E-9		0.0139	[0.0092-0.0186] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1673	chr8	142617260	142617261	rs746839	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	8q24.3		rs746839-C	0.6283	1E-20		0.0135	[0.011-0.016] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1673	chr8	142617260	142617261	rs746839	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	8q24.3	Intergenic	rs746839-C	0.6283	3E-24	(MTAG)	0.0138	[0.011-0.017] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1673	chr8	142619233	142619234	rs1106761	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	8q24.3	NA	rs1106761-A	0.3745	2E-11		0.0134	[0.0095-0.0173] unit increase	NR [~ 27400000] (imputed)	N
1673	chr8	142619233	142619234	rs1106761	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	8q24.3	Intergenic	rs1106761-A	0.385	7E-12	(MTAG)	0.0162	[0.011-0.021] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1673	chr8	142619233	142619234	rs1106761	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	8q24.3	NR	rs1106761-A	NR	9E-10		6.124	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1673	chr8	142619233	142619234	rs1106761	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	8q24.3	ENSG00000226490	rs1106761-A	NR	7E-10		0.019511458	[0.013-0.026] unit decrease	Affymetrix [NR]	N
1673	chr8	142619233	142619234	rs1106761	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	8q24.3	NR	rs1106761-A	0.3819	1E-11		0.0155486	NR unit decrease	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
1673	chr8	142619392	142619393	rs1078141	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	8q24.3	NR	rs1078141-?	NR	2E-7		5.219	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1673	chr8	142624526	142624527	rs1566085	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	8q24.3	AC138647.1	rs1566085-T	0.4566	3E-10		0.0128175635	[0.0088-0.0168] unit increase	Affymetrix [up to 18485882] (imputed)	N
1673	chr8	142624526	142624527	rs1566085	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	8q24.3	NR	rs1566085-?	NR	3E-10				Affymetrix [~ 8270000] (imputed)	N
1673	chr8	142624526	142624527	rs1566085	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	8q24.3		rs1566085-?	NR	1E-18				NR [~ 8900000] (imputed)	N
1673	chr8	142624526	142624527	rs1566085	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	8q24.3		rs1566085-T	0.5483	3E-20	(conditional-joint)	0.013	[0.01-0.016] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1673	chr8	142624526	142624527	rs1566085	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	8q24.3	ENSG00000226490	rs1566085-T	NR	9E-12		0.02099137	[0.015-0.027] unit increase	Affymetrix [NR]	N
1673	chr8	142632314	142632315	rs13263959	20585627	Eriksson N	2010-06-24	PLoS Genet	Web-based, participant-driven studies yield novel genetic associations for common traits.	Hair color	9,126 European ancestry individuals	NA	8q24.3	NR	rs13263959-?	NR	8E-7	(hair color)			Illumina [535076]	N
1673	chr8	142651708	142651709	rs11786084	31194737	Johnston KJA	2019-06-13	PLoS Genet	Genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	387,649 British ancestry individuals	NA	8q24.3	AC138647.1	rs11786084-G	0.3328	2E-8		0.0145	[0.0094-0.0196] unit decrease	NR [NR]	N
1673	chr8	142667265	142667266	rs2379251	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 15, philtrum width)	2,187 European ancestry individuals	NA	8q24.3	NR	rs2379251-C	0.2231	2E-6		0.1736	[0.1-0.24] unit decrease	Illumina [10677593] (imputed)	N
1673	chr8	142681459	142681460	rs6989141	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	8q24.3		rs6989141-A	0.208	8E-9		0.01	[0.0067-0.0133] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1673	chr8	142736530	142736531	rs4072286	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	8q24.3	intergenic	rs4072286-C	0.461	4E-7	(Eotaxin )	0.03	[NR] pg/mL increase	Illumina [899892]	N
1674	chr8	142843261	142843262	rs11775314	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	8q24.3	Intergenic	rs11775314-T	0.3833	9E-9	(MTAG)	0.0098	[0.0065-0.0131] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1674	chr8	142843261	142843262	rs11775314	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	8q24.3	Intergenic	rs11775314-T	0.3823	6E-9	(MTAG)	0.0079	[0.0052-0.0106] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1675	chr8	142878258	142878259	rs9772881	26962152	Offenbacher S	2016-03-08	Hum Mol Genet	Genome-wide association study of biologically informed periodontal complex traits offers novel insights into the genetic basis of periodontal disease.	Periodontal disease related phenotype (PCT3)	394 European American individuals with periodontal health, 389 European American individuals with mild-moderate periodontitis, 192 European American individuals with severe periodontitis	NA	8q24.3	TSNARE	rs9772881-?	NR	3E-8		0.46	[0.3-0.62] unit increase	Affymetrix [2135235] (imputed)	N
1675	chr8	142881965	142881966	rs10101158	27515689	Kerns SL	2016-07-20	EBioMedicine	Meta-analysis of Genome Wide Association Studies Identifies Genetic Markers of Late Toxicity Following Radiotherapy for Prostate Cancer.	Response to radiotherapy in prostate cancer (toxicity, urinary frequency)	1,409 European ancestry individuals	NA	8q24.3	intergenic	rs10101158-A	0.44	4E-6		1.8	[1.40-2.31]	NR [~ 38000000] (imputed)	N
1675	chr8	142885942	142885943	rs113978995	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 3, length of philtrum)	2,187 European ancestry individuals	NA	8q24.3	NR	rs113978995-C	0.01926	4E-6		0.5064	[0.29-0.72] unit increase	Illumina [10677593] (imputed)	N
1675	chr8	142910491	142910492	rs7013384	31991592	Coltell O	2020-01-24	Nutrients	Genome-Wide Association Study for Serum Omega-3 and Omega-6 Polyunsaturated Fatty Acids: Exploratory Analysis of the Sex-Specific Effects and Dietary Modulation in Mediterranean Subjects with Metabolic Syndrome.	Serum polyunsaturated fatty acid concentration x Mediterranean diet adherence interaction in metabolic syndrome	248 Mediterranean individuals with low adherence to Mediterranean diet, 178 Mediterranean individuals with high adherence to Mediterranean diet	NA	8q24.3	intergenic	rs7013384-A	0.186102	8E-6	(omega-3 PUFA)			Illumina [621723]	N
1675	chr8	142911113	142911114	rs6583593	31991592	Coltell O	2020-01-24	Nutrients	Genome-Wide Association Study for Serum Omega-3 and Omega-6 Polyunsaturated Fatty Acids: Exploratory Analysis of the Sex-Specific Effects and Dietary Modulation in Mediterranean Subjects with Metabolic Syndrome.	Serum polyunsaturated fatty acid concentration x Mediterranean diet adherence interaction in metabolic syndrome	248 Mediterranean individuals with low adherence to Mediterranean diet, 178 Mediterranean individuals with high adherence to Mediterranean diet	NA	8q24.3	intergenic	rs6583593-T	0.148762	9E-6	(omega-3 PUFA)			Illumina [621723]	N
1675	chr8	142911113	142911114	rs6583593	31991592	Coltell O	2020-01-24	Nutrients	Genome-Wide Association Study for Serum Omega-3 and Omega-6 Polyunsaturated Fatty Acids: Exploratory Analysis of the Sex-Specific Effects and Dietary Modulation in Mediterranean Subjects with Metabolic Syndrome.	Serum polyunsaturated fatty acid concentration x Mediterranean diet adherence interaction in metabolic syndrome	248 Mediterranean individuals with low adherence to Mediterranean diet, 178 Mediterranean individuals with high adherence to Mediterranean diet	NA	8q24.3	intergenic	rs6583593-?	NR	9E-6	(omega-6:omega-3 ratio)			Illumina [621723]	N
1675	chr8	142942925	142942926	rs535444038	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	8q24.3	AC104417.1	rs535444038-A	0.0043	1E-6		0.388	[0.23-0.54] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1675	chr8	142991041	142991042	rs191150200	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Alcohol consumption x experiences in childhood (felt loved by family member) interaction	41,648 European ancestry individuals	NA	8q24.3		rs191150200-?	NR	2E-8		2.1591	[1.4-2.91] unit decrease	Affymetrix [NR] (imputed)	N
1676	chr8	143020730	143020731	rs7845056	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	8q24.3	NR	rs7845056-C	0.409235014686248	9E-6	(IGP48)	0.1776	[0.099-0.256] unit increase	Illumina [~ 2500000] (imputed)	N
1676	chr8	143022749	143022750	rs183426504	34838041	Naderi E	2021-11-27	J Transl Med	A two-stage genome-wide association study of radiation-induced acute toxicity in head and neck cancer.	radiation-induced toxicity (patient-rated acute xerostomia)	802 Dutch ancestry individuals	241 Dutch ancestry individuals	8q24.3		rs183426504-T	NR	6E-6		0.41260713	[0.24-0.59] increase	Illumina [6334277] (imputed)	N
1676	chr8	143047509	143047510	rs76329314	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Endometriosis	645 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	8q24.3	Intergenic	rs76329314-?		2E-6		2.38	[1.66-3.41]	Illumina [7645193] (imputed)	N
1676	chr8	143047638	143047639	rs59694261	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Alanine aminotransferase levels in low alcohol consumption	8,716 individuals	NA	8q24.3	NR	rs59694261-?	NR	5E-6		0.0799	[0.046-0.114] unit decrease	Illumina [~ 7800000] (imputed)	N
1676	chr8	143047787	143047788	rs28709344	33115937	Cho J	2020-10-28	Thorax	Genome-wide association study of non-tuberculous mycobacterial pulmonary disease.	Non-tuberculous mycobacterial pulmonary disease	403 Korean ancestry cases, 306 Korean ancestry controls	184 Korean ancestry cases, 1680 Korean ancestry controls	8q24.3	NR	rs28709344-G	0.38	6E-6				Illumina [4877242] (imputed)	N
1676	chr8	143069519	143069520	rs73716038	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Neuroticism	170,911 European ancestry individuals	NA	8q24.3	NR	rs73716038-A	0.918	2E-6		0.03100201	[0.018-0.044] unit increase	Affymetrix [up to 6544775] (imputed)	N
1676	chr8	143094914	143094915	rs55901436	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	8q24.3	Intergenic	rs55901436-T	0.3274	1E-11	(MTAG)	0.0129	[0.0092-0.0166] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1676	chr8	143094914	143094915	rs55901436	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	8q24.3	Intergenic	rs55901436-T	0.3274	3E-8		0.0115	[0.0074-0.0156] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1676	chr8	143095602	143095603	rs4917278	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	8q24.3	Intergenic	rs4917278-A	0.3149	5E-12	(MTAG)	0.017	[0.012-0.022] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1676	chr8	143097422	143097423	rs11167110	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	8q24.3	NR	rs11167110-?	NR	3E-6		4.681	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1676	chr8	143099871	143099872	rs902820	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	8q24.3		rs902820-A	0.4224	1E-11		0.0096	[0.0069-0.0123] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1676	chr8	143099871	143099872	rs902820	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	8q24.3	Intergenic	rs902820-A	0.4224	2E-15	(MTAG)	0.0106	[0.0081-0.0131] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1676	chr8	143100959	143100960	rs7015050	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	8q24.3	NR	rs7015050-A	NR	4E-8		5.492	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1676	chr8	143102393	143102394	rs11786894	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	8q24.3	Intergenic	rs11786894-A	0.5125	7E-16	(MTAG)	0.0133	[0.01-0.0166] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1676	chr8	143107729	143107730	rs7826964	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	8q24.3	Intergenic	rs7826964-G	0.4894	3E-9		0.0134	[0.0089-0.0179] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1676	chr8	143121670	143121671	rs4917300	22959728	Ahmeti KB	2012-09-05	Neurobiol Aging	Age of onset of amyotrophic lateral sclerosis is modulated by a locus on 1p34.1.	Amyotrophic lateral sclerosis	4,243 European ancestry cases, 5,112 European ancestry controls	NA	8q24.3	intergenic	rs4917300-T	0.46	2E-6	(Joint)	1.27	[1.14-1.42]	Illumina [254145]	N
1677	chr8	143136113	143136114	rs7817581	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	8q24.3	TSNARE1	rs7817581-G	0.67229	8E-9		0.00861219	[0.0057-0.0115] unit increase	Affymetrix [12370749]	N
1677	chr8	143145546	143145547	rs12334475	28115744	Ikeda M	2017-01-24	Mol Psychiatry	A genome-wide association study identifies two novel susceptibility loci and trans population polygenicity associated with bipolar disorder.	Bipolar disorder	2,964 Japanese ancestry case, 61,887 Japanese ancestry controls, 7,481 European ancestry cases, 9,250 European ancestry controls	NA	8q24.3	LOC100131146	rs12334475-T	NR	3E-7		1.3733491	[1.21714766313734-1.54959718221248]	Illumina [at least 6195093] (imputed)	N
1677	chr8	143179894	143179895	rs74702439	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Word spelling	3,399 European ancestry individuals	NA	8q24.3	Intergenic	rs74702439-G	0.940385	5E-7		0.746549	[0.46-1.04] unit decrease	Illumina [6969139] (imputed)	N
1677	chr8	143179894	143179895	rs74702439	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Reading ability (multivariate)	up to 3,468 European ancestry individuals	NA	8q24.3	NR	rs74702439-?		3E-6				Illumina [up to 6969139] (imputed)	N
1677	chr8	143225685	143225686	rs62514666	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 19)	2,187 European ancestry individuals	NA	8q24.3	NR	rs62514666-A	0.09766	3E-6		0.239	[0.14-0.34] unit decrease	Illumina [10677593] (imputed)	N
1677	chr8	143233676	143233677	rs10085978	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	8q24.3	Intergenic	rs10085978-T	NR	9E-6		0.0232018	[0.013-0.033] unit increase	Illumina [13520550] (imputed)	N
1678	chr8	143287645	143287646	rs150813590	34074324	Wan JY	2021-06-01	Diabetol Metab Syndr	Genome-wide association analysis of metabolic syndrome quantitative traits in the GENNID multiethnic family study.	Weight	281 African American individuals from 73 families, 516 European ancestry individuals from 75 families, 125 Japanese American individuals from 15 families, 598 Mexican American individuals from 96 families	NA	8q24.3	LINC00051	rs150813590-T	0.03	7E-7	(African American)	1.04	[0.63-1.45] unit decrease	Illumina [up to 13042663] (imputed)	N
1678	chr8	143297816	143297817	rs73716161	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	8q24.3	TSNARE1	rs73716161-A	0.0680010575414914	4E-6	(G_Veillonella_RNT)	0.346322	[0.2-0.49] unit increase	Illumina [7711310] (imputed)	N
1678	chr8	143300278	143300279	rs4072917	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	8q24.3	NR	rs4072917-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
1678	chr8	143300278	143300279	rs4072917	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	8q24.3		rs4072917-?	NR	7E-9				NR [~ 8900000] (imputed)	N
1678	chr8	143309503	143309504	rs10098073	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	8q24.3		rs10098073-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1678	chr8	143309503	143309504	rs10098073	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	8q24.3	Intergenic	rs10098073-A	0.4787	2E-12	(MTAG)	0.0126	[0.0091-0.0161] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1678	chr8	143309503	143309504	rs10098073	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	8q24.3	Intergenic	rs10098073-A	0.4788	4E-16	(MTAG)	0.0135	[0.01-0.017] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1678	chr8	143309503	143309504	rs10098073	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	8q24.3		rs10098073-A	0.4775	1E-10		0.0091	[0.0064-0.0118] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1678	chr8	143310814	143310815	rs11167136	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Bipolar disorder (MTAG)	at least 20,352 European ancestry cases, at least 31,358 European ancestry controls	NA	8q24.3	NR	rs11167136-A	0.4314	4E-9		0.064090855	[0.043-0.085] unit decrease	NR [NR]	N
1678	chr8	143310814	143310815	rs11167136	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Bipolar disorder (MTAG)	65,682 individuals	NA	8q24.3	NR	rs11167136-?		1E-9				NR [520857]	N
1678	chr8	143311652	143311653	rs4976976	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs autism spectrum disorder (ordinary least squares (OLS))	40,675 schizophrenia cases, 18,381 autism spectrum disorder cases	NA	8q24.3		rs4976976-?	NR	4E-11		0.0199	NR unit decrease	NR [4484088] (imputed)	N
1678	chr8	143311652	143311653	rs4976976	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	8q24.3	NR	rs4976976-G	0.406561	2E-11		0.043042526	[0.03-0.056] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1678	chr8	143311652	143311653	rs4976976	30626913	Amare AT	2019-01-09	Mol Psychiatry	Bivariate genome-wide association analyses of the broad depression phenotype combined with major depressive disorder, bipolar disorder or schizophrenia reveal eight novel genetic loci for depression.	Broad depression or schizophrenia	9,240 European ancestry broad depression cases, 9,519 European ancestry broad depression controls, 51,258 European ancestry individuals, 36,989 European and East Asian ancestry schizophrenia cases, 113,075 European and East Asian ancestry schizophrenia controls	322,580 individuals	8q24.3	TSNARE1	rs4976976-A	0.4	4E-12				Affymetrix, Illumina [at least 918921] (imputed)	N
1678	chr8	143311652	143311653	rs4976976	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	8q24.3	Intergenic	rs4976976-A	0.4017	1E-11		0.0198	[0.014-0.025] unit increase	Affymetrix, Illumina [10100000] (imputed)	N
1678	chr8	143311652	143311653	rs4976976	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	8q24.3	NR	rs4976976-A	NR	5E-10		6.235	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1678	chr8	143311652	143311653	rs4976976	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	8q24.3	TSNARE1	rs4976976-A	NR	3E-11		6.657	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1678	chr8	143312932	143312933	rs4129585	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Schizophrenia (MTAG)	940,613 European ancestry individuals	NA			rs4129585-?	NR	7E-13				NR [2625067]	N
1678	chr8	143312932	143312933	rs4129585	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs ADHD (ordinary least squares (OLS))	40,675 schizophrenia cases, 19,099 ADHD cases	NA			rs4129585-?	NR	4E-12		0.0239	NR unit decrease	NR [4428082] (imputed)	N
1678	chr8	143312932	143312933	rs4129585	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Schizophrenia (MTAG)	at least 33,640 European ancestry cases, at least 43,456 European ancestry controls	NA		NR	rs4129585-A	0.4453	6E-13		0.07864017	[0.057-0.1] unit increase	NR [NR]	N
1678	chr8	143312932	143312933	rs4129585	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	67,764 individuals	NA		NR	rs4129585-?		1E-11				NR [8377093]	N
1678	chr8	143312932	143312933	rs4129585	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA		TSNARE1	rs4129585-?		2E-15				NR [6786993] (imputed)	N
1678	chr8	143312932	143312933	rs4129585	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA		TSNARE1	rs4129585-?	NR	4E-12		0.013844145	[0.0099-0.0178] unit decrease	NR [7306098]	N
1678	chr8	143312932	143312933	rs4129585	31268507	Periyasamy S	2019-07-03	JAMA Psychiatry	Association of Schizophrenia Risk With Disordered Niacin Metabolism in an Indian Genome-wide Association Study.	Schizophrenia	816 Indian ancestry cases, 900 Indian ancestry controls, 505 Indian ancestry cases and 871 Indian ancestry controls from 405 families, up to 36,989 European and unknown ancestry cases, up to 113,075 European and unknown ancestry controls	NA		NR	rs4129585-?	NR	7E-13				Illumina [up to 5582932] (imputed)	N
1678	chr8	143312932	143312933	rs4129585	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	Anxiety/tension (special factor of neuroticism)	270,059 British ancestry individuals	NA		TSNARE1	rs4129585-A	NR	2E-8		0.008528	[0.0055-0.0115] unit decrease	Affymetrix [18485882] (imputed)	N
1678	chr8	143312932	143312933	rs4129585	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA		NR	rs4129585-C	0.560468698629239	2E-8		0.006435812	[0.0042-0.0087] unit decrease	NR [NR]	N
1678	chr8	143312932	143312933	rs4129585	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals		NR	rs4129585-C	0.560468698629239	2E-8		0.00843089	[0.0055-0.0114] unit decrease	NR [NR]	N
1678	chr8	143312932	143312933	rs4129585	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals		NR	rs4129585-C	0.560468698629239	2E-8		0.005336742	[0.0035-0.0072] unit decrease	NR [NR]	N
1678	chr8	143312932	143312933	rs4129585	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA		TSNARE1	rs4129585-A	NR	4E-13	(EA)	1.0822511	[1.06-1.1]	Illumina [6627481] (imputed)	N
1678	chr8	143312932	143312933	rs4129585	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals		TSNARE1	rs4129585-A	0.4392	1E-12		0.1749	[0.13-0.22] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1678	chr8	143312932	143312933	rs4129585	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling tense	371,318 European ancestry individuals	NA		TSNARE1	rs4129585-A	0.426732	8E-10		6.15	z score increase	NR [10847151] (imputed)	N
1678	chr8	143312932	143312933	rs4129585	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling nervous	373,121 European ancestry individuals	NA		TSNARE1	rs4129585-A	0.426732	1E-10		6.41	z score increase	NR [10847151] (imputed)	N
1678	chr8	143312932	143312933	rs4129585	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA		LINC00051, TSNARE1	rs4129585-A		2E-12		1.07	[1.05-1.09]	Affymetrix, Illumina [NR]	N
1678	chr8	143312932	143312933	rs4129585	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA		NR	rs4129585-A	NR	8E-14		1.08	[NR]	Illumina [7158791] (imputed)	N
1678	chr8	143312932	143312933	rs4129585	25056061	Ripke S	2014-07-22	Nature	Biological insights from 108 schizophrenia-associated genetic loci.	Schizophrenia	32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	1,513 European ancestry cases, 66,236 European ancestry controls		TSNARE1	rs4129585-A	0.424	2E-15		1.087	[1.065-1.109]	Affymetrix, Illumina [9005918] (imputed)	N
1678	chr8	143312932	143312933	rs4129585	23974872	Ripke S	2013-08-25	Nat Genet	Genome-wide association analysis identifies 13 new risk loci for schizophrenia.	Schizophrenia	5,001 European ancestry cases, 6,243 European ancestry controls, 8,832 cases, 12,067 controls	4,801 European ancestry cases, 4,741 European ancestry controls, 2,612 European and unknown ancestry cases, 15,021 European and unknown ancestry controls, 581 trios		TSNARE1	rs4129585-A	0.439	2E-10		1.091	[1.06-1.12]	Affymetrix, Illumina [9871789]	N
1678	chr8	143316969	143316970	rs13262595	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Anxiety	at least 23,606 European ancestry cases, at least 113,351 European ancestry controls	624,615 European ancestry cases, 1,310,854 European ancestry controls	8q24.3	TSNARE1	rs13262595-A	0.4443	2E-9		0.013675288	[0.0086-0.0188] unit increase	NR [9417325] (imputed)	N
1678	chr8	143316969	143316970	rs13262595	33563987	Tyrrell J	2021-02-09	Nat Commun	Genetic predictors of participation in optional components of UK Biobank.	Acceptance of an invitation to participate in a mental health questionnaire	146,074 European ancestry cases, 148,713 European ancestry controls	NA	8q24.3	NR	rs13262595-A	0.44	8E-9		0.97	[0.97, 0.98]	Affymetrix [39302896] (imputed)	N
1678	chr8	143316969	143316970	rs13262595	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Executive function (trail making test B)	78,547 British ancestry individuals	NA	8q24.3		rs13262595-?	NR	2E-10				NR [7857346] (imputed)	N
1678	chr8	143316969	143316970	rs13262595	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Cognitive traits (MTAG)	331,679 British ancestry individuals	NA	8q24.3		rs13262595-?	NR	8E-11				NR [7857346] (imputed)	N
1678	chr8	143316969	143316970	rs13262595	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	65,967 individuals	NA	8q24.3	NR	rs13262595-?		5E-9				NR [8377093]	N
1678	chr8	143316969	143316970	rs13262595	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (computer use)	408,815 European ancestry individuals	NA	8q24.3	NR	rs13262595-?		1E-12		0.0157346	[0.011-0.02] unit decrease	Affymetrix [19400418] (imputed)	N
1678	chr8	143316969	143316970	rs13262595	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	8q24.3	NR	rs13262595-?	NR	3E-14		1.06983	[1.05-1.09]	Affymetrix, Illumina [12447948] (imputed)	N
1678	chr8	143316969	143316970	rs13262595	31263887	Adams MJ	2019-07-01	Int J Epidemiol	Factors associated with sharing e-mail information and mental health survey participation in large population cohorts.	Mental health study participation (completed survey)	122,647 British ancestry cases, 248,781 British ancestry controls	NA	8q24.3	TSNARE1	rs13262595-G	0.56	1E-9		0.0066159	[0.0045-0.0087] unit increase	NR [16367095] (imputed)	N
1678	chr8	143316969	143316970	rs13262595	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	8q24.3	NR	rs13262595-G	0.560221039748151	2E-8		0.005182854	[0.0034-0.007] unit decrease	NR [NR]	N
1678	chr8	143316969	143316970	rs13262595	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	8q24.3	Intergenic	rs13262595-A	0.4452	4E-8		0.0125	[0.008-0.017] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1678	chr8	143316969	143316970	rs13262595	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	8q24.3	Intergenic	rs13262595-A	0.4427	1E-15	(MTAG)	0.0105	[0.008-0.013] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1678	chr8	143316969	143316970	rs13262595	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	8q24.3	Intergenic	rs13262595-A	0.4376	8E-17	(MTAG)	0.0193	[0.015-0.024] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1678	chr8	143316969	143316970	rs13262595	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	8q24.3	NR	rs13262595-A	NR	9E-10		6.125	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1678	chr8	143316969	143316970	rs13262595	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	8q24.3	NR	rs13262595-A	NR	3E-13		0.01744	[0.013-0.022] unit increase	Affymetrix [10847151] (imputed)	N
1678	chr8	143316969	143316970	rs13262595	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	8q24.3	NR	rs13262595-A	NR	6E-9		5.829	z score increase	Affymetrix [10847151] (imputed)	N
1678	chr8	143316969	143316970	rs13262595	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	8q24.3	TSNARE1	rs13262595-A	NR	4E-13		7.25	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1678	chr8	143316969	143316970	rs13262595	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	8q24.3	TSNARE1	rs13262595-A	NR	3E-9		0.017988795	[0.012-0.024] unit decrease	Affymetrix [NR]	N
1678	chr8	143320141	143320141	rs58033671	29483656	Pardinas AF	2018-02-26	Nat Genet	Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.	Schizophrenia	40,675 European ancestry cases, 64,643 European ancestry controls	1,651 European ancestry cases, 4,111 cases, 142,717 European ancestry controls, 11,507 controls	8q24.3	LINC00051, MIR4472-1, TSNARE1	rs58033671-?	NR	9E-18		1.087	[1.07-1.11]	Illumina [8000000] (imputed)	N
1678	chr8	143322469	143322470	rs4284148	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Bipolar disorder (MTAG)	1,450,972 European ancestry individuals	NA			rs4284148-?	NR	2E-9				NR [2625067]	N
1678	chr8	143326190	143326191	rs13282237	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	8q24.3	NR	rs13282237-G	NR	2E-8		0.01353	[0.0088-0.0183] unit decrease	Affymetrix [10847151] (imputed)	N
1678	chr8	143326236	143326237	rs8180995	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	8q24.3	TSNARE1	rs8180995-A	0.535016	9E-10		0.0121948	[0.0081-0.0163] unit decrease	NR [16516521] (imputed)	N
1678	chr8	143333230	143333231	rs7012636	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	8q24.3	TSNARE1	rs7012636-A	0.527	9E-11		0.1764	[0.12-0.23] mmHg increase	Affymetrix [NR] (imputed)	N
1678	chr8	143333524	143333525	rs67756423	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	8q24.3	TSNARE1	rs67756423-A		4E-10		1.08	[1.05-1.10]	Affymetrix, Illumina [NR]	N
1678	chr8	143351566	143351567	rs12675715	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	8q24.3		rs12675715-?	NR	5E-10				NR [~ 8900000] (imputed)	N
1678	chr8	143356113	143356114	rs144336753	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	8q24.3		rs144336753-A	0.0181	3E-13		0.0388	[0.028-0.049] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1678	chr8	143357022	143357023	rs145959269	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	8q24.3	TSNARE1	rs145959269-G	0.01	2E-10	(EA)	0.9587	[0.67-1.25] unit increase	Illumina [~ 9000000] (imputed)	N
1678	chr8	143357022	143357023	rs145959269	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	8q24.3	TSNARE1	rs145959269-G	0.01	2E-10		0.9637	[0.67-1.25] unit increase	Illumina [~ 9000000] (imputed)	N
1678	chr8	143358315	143358316	rs72687362	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	8q24.3	TSNARE1	rs72687362-?		4E-9		1.0752687	[1.05-1.1]	Affymetrix, Illumina [NR]	N
1678	chr8	143361457	143361458	rs141086701	31409800	Pazoki R	2019-08-13	Nat Commun	GWAS for urinary sodium and potassium excretion highlights pathways shared with cardiovascular traits.	Urinary sodium excretion	446,237 European ancestry individuals	7,612 African ancestry individuals, 10,095 South Asian ancestry individuals	8q24.3	intergenic	rs141086701-G	0.991838	9E-10	(EA)	0.0449508	[0.031-0.059] unit increase	Affymetrix [~ 8800000] (imputed)	N
1678	chr8	143363228	143363229	rs34819186	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	8q24.3	TSNARE1	rs34819186-A	0.538	5E-11		0.0078	[0.0054-0.0102] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
1678	chr8	143363228	143363229	rs34819186	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	8q24.3	TSNARE1	rs34819186-A	0.5463	3E-8		0.010758621	[0.0069-0.0146] unit increase	Illumina [9339358] (imputed)	N
1678	chr8	143364520	143364521	rs13275517	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		8q24.3	TSNARE1	rs13275517-T	0.543763	4E-9		0.00814992	[0.0054-0.0109] unit decrease	Affymetrix [12370749]	N
1678	chr8	143367856	143367857	rs77702622	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	8q24.3		rs77702622-A	0.0614	4E-13		0.0213	[0.016-0.027] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1678	chr8	143383693	143383694	rs10099330	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	8q24.3	NA	rs10099330-A	0.538	3E-12		0.0119	[0.0086-0.0152] unit decrease	NR [~ 27400000] (imputed)	N
1679	chr8	143401239	143401240	rs7009759	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	8q24.3	NA	rs7009759-G		4E-11		0.0150285	[0.011-0.019] unit increase	Illumina [13288253] (imputed)	N
1679	chr8	143403692	143403693	rs13266463	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	8q24.3	TSNARE1	rs13266463-G	NR	9E-9		1.059322	[1.04-1.08]	Illumina [6627481] (imputed)	N
1679	chr8	143403692	143403693	rs13266463	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	8q24.3	TSNARE1	rs13266463-G	NR	2E-8		1.0559661	[1.04-1.08]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1679	chr8	143444049	143444050	rs117713019	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Chronic sinus infection	5,291 European ancestry cases, 79,622 European ancestry controls	NA	8q24.3	NR	rs117713019-?	NR	9E-7		0.2421	[0.15-0.34] unit increase	Illumina [at least 560000] (imputed)	N
1679	chr8	143466596	143466597	rs4928692	30737484	Thomsen H	2019-02-08	Leukemia	Genome-wide association study of monoclonal gammopathy of unknown significance (MGUS): comparison with multiple myeloma.	Monoclonal gammopathy of undetermined significance	992 European ancestry cases, 2,910 European ancestry controls	NA	8q24.3	TSNARE1	rs4928692-G		3E-6		1.38	[1.21-1.59]	Illumina [10258281] (imputed)	N
1679	chr8	143470842	143470843	rs147368169	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	8q24.3	TSNARE1	rs147368169-A	0.01	2E-8	(EA)	0.8547	[0.56-1.15] unit increase	Illumina [~ 9000000] (imputed)	N
1679	chr8	143470842	143470843	rs147368169	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	8q24.3	TSNARE1	rs147368169-A	0.01	2E-8		0.8501	[0.56-1.14] unit increase	Illumina [~ 9000000] (imputed)	N
1679	chr8	143483602	143483603	rs59366013	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	8q24.3	Intergenic	rs59366013-T	0.351	1E-9	(MTAG)	0.0114	[0.0077-0.0151] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1679	chr8	143516425	143516426	rs12546755	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	8q24.3	Intergenic	rs12546755-G	0.2153	2E-8		0.0134	[0.0087-0.0181] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1680	chr8	143527734	143527735	rs35588074	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Bipolar disorder x sex interaction	19,924 European ancestry cases, 30,547 European ancestry controls	NA	8q24.3	TSNARE1, ADGRB1	rs35588074-A	0.9439	4E-6		0.4037	[0.23-0.58] unit increase	NR [NR] (imputed)	N
1680	chr8	143533738	143533739	rs13256888	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	8q24.3	Intergenic	rs13256888-A	0.7096	7E-14	(MTAG)	0.0136	[0.01-0.017] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1680	chr8	143534776	143534777	rs7460106	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	8q24.3		rs7460106-T	0.762	2E-13		0.0123	[0.009-0.0156] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1680	chr8	143534776	143534777	rs7460106	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	8q24.3	Intergenic	rs7460106-T	0.762	1E-14	(MTAG)	0.012	[0.0089-0.0151] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1680	chr8	143555352	143555353	rs55731933	33106475	Li QS	2020-10-26	Transl Psychiatry	Genome-wide association studies of antidepressant class response and treatment-resistant depression.	Response to antidepressants (non-treatment-resistant vs treatment-resistant depression)	21,649 European ancestry individuals with non-treatment-resistant depression, 3,857 European ancestry individuals with treatment-resistant depression	NA	8q24.3	NR	rs55731933-T	NR	2E-6		1.1856	NR	Illumina [at least 560000] (imputed)	N
1680	chr8	143560897	143560898	rs12680973	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	8q24.3	NR	rs12680973-?	NR	2E-7		5.249	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1680	chr8	143626484	143626485	rs13265333	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Automobile speeding propensity	404,291 European ancestry individuals	NA	8q24.3	ARC	rs13265333-C	0.398	7E-10		0.014185216	[0.0097-0.0187] unit decrease	Affymetrix [11514463] (imputed)	N
1681	chr8	143661670	143661671	rs183361352	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,931 Sub-Saharan African ancestry males	NA	8q24.3		rs183361352-C	0.989678	8E-6		0.0676319	[0.038-0.098] unit decrease	Illumina [13900000] (imputed)	N
1681	chr8	143671614	143671615	rs10105842	33002439	Jin G	2020-10-01	Lancet Oncol	Genetic risk, incident gastric cancer, and healthy lifestyle: a meta-analysis of genome-wide association studies and prospective cohort study.	Gastric cancer	10,254 Han Chinese ancestry cases, 10,914 Han Chinese ancestry controls	NA	8q24.3	NR	rs10105842-T	0.68	4E-9		0.87	NR	Affymetrix, Illumina [6957974] (imputed)	N
1681	chr8	143680771	143680772	rs66671632	30954325	Kamboh MI	2019-03-11	Neurobiol Aging	Population-based genome-wide association study of cognitive decline in older adults free of dementia: identification of a novel locus for the attention domain.	Age-related cognitive decline (attention/processing speed) (slope of z-scores)	1,145 European ancestry individuals	NA	8q24.3	BAI1, ARC	rs66671632-T	0.12	2E-6		0.28	unit decrease	Illumina [5600000] (imputed)	N
1681	chr8	143680771	143680772	rs66671632	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	8q24.3		rs66671632-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1681	chr8	143680771	143680772	rs66671632	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	8q24.3		rs66671632-T	0.1299	2E-10		0.0133	[0.0092-0.0174] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1681	chr8	143680771	143680772	rs66671632	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	8q24.3	Intergenic	rs66671632-T	0.1299	1E-9	(MTAG)	0.0119	[0.008-0.0158] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1681	chr8	143686994	143686995	rs9324593	30753327	Hishida A	2019-02-08	Carcinogenesis	GWAS analysis reveals a significant contribution of PSCA to the risk of Heliobacter pylori-induced gastric atrophy.	Pepsinogen I/II ratio	3,385 Japanese ancestry individuals	2,885 Japanese ancestry individuals	8q24.3	Intergenic	rs9324593-G	0.395	1E-8		0.094	[0.053-0.135] unit increase	Illumina [575802]	N
1681	chr8	143690832	143690833	rs10110456	30753327	Hishida A	2019-02-08	Carcinogenesis	GWAS analysis reveals a significant contribution of PSCA to the risk of Heliobacter pylori-induced gastric atrophy.	Pepsinogen I/II ratio	3,385 Japanese ancestry individuals	2,885 Japanese ancestry individuals	8q24.3	Intergenic	rs10110456-A	0.41	2E-10		0.1	[0.059-0.141] unit increase	Illumina [575802]	N
1681	chr8	143691633	143691634	rs60275617	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	8q24.3	NR	rs60275617-G	0.237	2E-8		0.00730058	[0.0048-0.0098] unit decrease	NR [9732723] (imputed)	N
1681	chr8	143691837	143691838	rs7465272	20889312	Wang KS	2010-10-01	Schizophr Res	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	8q24.3	NR	rs7465272-?	NR	9E-6		1.2559	[NR]	Affymetrix [722112]	N
1681	chr8	143730455	143730456	rs11785400	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	8q24.3	NR	rs11785400-T	NR	8E-7		1.06	[NR]	Illumina [7158791] (imputed)	N
1681	chr8	143739019	143739020	rs1137522	33169155	Bigdeli TB	2020-11-10	Schizophr Bull	Genome-Wide Association Studies of Schizophrenia and Bipolar Disorder in a Diverse Cohort of US Veterans.	Schizophrenia	44,794 European ancestry cases, 7,509 African American cases, 1,234 Latino cases, 112,777 European ancestry controls, 8,337 African American controls, 3,090 Latino controls	NA	8q24.3	PSCA	rs1137522-C	NR	5E-9		1.05	[1.03-1.07]	Affymetrix [up to 49134253] (imputed)	N
1681	chr8	143752993	143752994	rs2976384	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	8q24.3		rs2976384-C	NR	3E-12		0.0117	[0.0084-0.015] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1681	chr8	143752993	143752994	rs2976384	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	8q24.3		rs2976384-C	NR	5E-10		0.0119	[0.0082-0.0156] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1681	chr8	143753545	143753546	rs13264644	31809533	Han X	2019-09-06	Hum Mol Genet	Genome-wide association analysis of 95 549 individuals identifies novel loci and genes influencing optic disc morphology.	Optic disc size	67,040 British ancestry individuals	28,509 European ancestry individuals	8q24.3	PSCA	rs13264644-A	0.57	5E-8		0.01	unit decrease	Affymetrix [8928767] (imputed)	N
1681	chr8	143753695	143753696	rs72690918	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	8q24.3	NR	rs72690918-?	NR	1E-7	(AA)	1.5694	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1681	chr8	143754727	143754728	rs2920286	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	163,835 East Asian ancestry individuals	NA	8q24.3		rs2920286-A	0.631464	5E-10		0.0206366	[0.014-0.027] unit decrease	Illumina [13479178] (imputed)	N
1681	chr8	143755719	143755720	rs2978977	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Gastric cancer	6,563 Japanese ancestry cases, 195,745 Japanese ancestry controls	NA	8q24.3		rs2978977-A	0.491371594	3E-43		1.2872158	[1.241855113-1.334233523]	Illumina [8919992] (imputed)	N
1681	chr8	143757036	143757037	rs2920283	30753327	Hishida A	2019-02-08	Carcinogenesis	GWAS analysis reveals a significant contribution of PSCA to the risk of Heliobacter pylori-induced gastric atrophy.	Severe gastric atrophy	120 Japanese ancestry cases, 760 Japanese ancestry controls	435 Japanese ancestry cases, 184 Japanese ancestry controls	8q24.3	PSCA	rs2920283-T	0.388	2E-13		0.633	[0.33-0.93] unit decrease	Illumina [575802]	N
1681	chr8	143757036	143757037	rs2920283	30753327	Hishida A	2019-02-08	Carcinogenesis	GWAS analysis reveals a significant contribution of PSCA to the risk of Heliobacter pylori-induced gastric atrophy.	Pepsinogen I/II ratio	3,385 Japanese ancestry individuals	2,885 Japanese ancestry individuals	8q24.3	PSCA	rs2920283-T	0.388	4E-27		0.143	[0.1-0.18] unit increase	Illumina [575802]	N
1681	chr8	143759136	143759137	rs2978981	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	8q24.3	PSCA	rs2978981-T	0.4781	5E-9		0.0041	[0.0027-0.0055] unit decrease	Affymetrix, Illumina [8176554] (imputed)	N
1681	chr8	143760131	143760192	rs372173246	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gastric polyp	6,155 European ancestry cases, 341,871 European ancestry controls, 1,337 East Asian ancestry cases, 158,249 East Asian ancestry controls	NA	8q24.3		rs372173246-C	NR	4E-9		0.2338	[0.16-0.31] unit increase	Affymetrix, Illumina [20456140] (imputed)	N
1681	chr8	143760131	143760192	rs372173246	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gastric polyp	1,337 East Asian ancestry cases, 158,249 East Asian ancestry controls	NA	8q24.3		rs372173246-C	0.473097498	4E-9		0.23381744	[0.16-0.31] unit increase	Illumina [13427015] (imputed)	N
1681	chr8	143760131	143760192	rs372173246	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gastric cancer	7,921 East Asian ancestry cases, 159,201 East Asian ancestry controls	NA	8q24.3		rs372173246-C	0.473470385	8E-46		0.24335453	[0.21-0.28] unit increase	Illumina [13428249] (imputed)	N
1681	chr8	143760255	143760256	rs2976388	33608531	Wu Y	2021-02-19	Nat Commun	GWAS of peptic ulcer disease implicates Helicobacter pylori infection, other gastrointestinal disorders and depression.	Peptic ulcer disease	16,666 European ancestry cases, 439,661 European ancestry controls	NA	8q24.3	NR	rs2976388-G	0.58	2E-14		1.09	NR	NR [8546065] (imputed)	N
1681	chr8	143760255	143760256	rs2976388	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA	8q24.3	JRK, PSCA	rs2976388-G	0.56	3E-10		0.04	[0.04-0.05] unit increase	Illumina [at least 560000] (imputed)	N
1681	chr8	143760443	143760444	rs2920281	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Bladder cancer	2,242 European ancestry cases, 410,350 European ancestry controls	NA	8q24.3		rs2920281-T	NR	2E-8		1.1884953	NR	Affymetrix [7846216] (imputed)	N
1681	chr8	143761143	143761144	rs2920280	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gastric cancer	1,029 European ancestry cases, 475,087 European ancestry controls, 7,921 East Asian ancestry cases, 159,201 East Asian ancestry controls	NA	8q24.3		rs2920280-C	NR	4E-49		0.232	[0.2-0.26] unit increase	Affymetrix, Illumina [25843697] (imputed)	N
1681	chr8	143761930	143761931	rs2294008	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Cancer	56,634 White British ancestry cases, 218,196 White British ancestry controls	NA	8q24.3		rs2294008-?	NR	8E-6		1.03168	[1.02-1.05]	NR [688737]	N
1681	chr8	143761930	143761931	rs2294008	30753327	Hishida A	2019-02-08	Carcinogenesis	GWAS analysis reveals a significant contribution of PSCA to the risk of Heliobacter pylori-induced gastric atrophy.	Gastric atrophy	479 Japanese ancestry cases, 760 Japanese ancestry controls	1,091 Japanese ancestry cases, 184 Japanese ancestry controls	8q24.3	PSCA	rs2294008-C	0.389	4E-11		0.426	[0.26-0.6] unit decrease	Illumina [575802]	N
1681	chr8	143761930	143761931	rs2294008	30281874	Tanikawa C	2018-10-03	Cancer Sci	A GWAS identifies gastric cancer susceptibility loci at 12q24.11-12 and 20q11.21.	Gastric cancer	6,171 Japanese ancestry cases, 27,178 Japanese ancestry controls	5,336 Japanese ancestry cases, 11,726 Japanese ancestry controls	8q24.3	NR	rs2294008-T	NR	1E-44		1.3140606		Illumina [6573681] (imputed)	N
1681	chr8	143761930	143761931	rs2294008	26701879	Wang Z	2015-12-23	Gut	Identification of new susceptibility loci for gastric non-cardia adenocarcinoma: pooled results from two Chinese genome-wide association studies.	Non-cardia gastric cancer	2,031 Han Chinese ancestry cases, 4,970 Han Chinese ancestry controls	3,564 Han Chinese ancestry cases, 4,637 Han Chinese ancestry controls	8q24.3	PSCA	rs2294008-T	0.26	6E-11		1.2	[1.15-1.28]	Affymetrix, Illumina [6223896] (imputed)	N
1681	chr8	143761930	143761931	rs2294008	26098866	Helgason H	2015-06-22	Nat Genet	Loss-of-function variants in ATM confer risk of gastric cancer.	Gastric cancer	2,500 European ancestry cases, 205,652 European ancestry controls (includes non-array genotyped, whole genome imputed individuals)	NA	8q24.3	PSCA	rs2294008-T	0.471	2E-7		1.21	[NR]	Illumina [~ 25000000] (imputed)	N
1681	chr8	143761930	143761931	rs2294008	26098866	Helgason H	2015-06-22	Nat Genet	Loss-of-function variants in ATM confer risk of gastric cancer.	Gastric adenocarcinoma (histologically verified)	2,043 European ancestry cases, 202,533 European ancestry controls	NA	8q24.3	PSCA	rs2294008-T	0.471	1E-6		1.21	[NR]	Illumina [~ 25000000] (imputed)	N
1681	chr8	143761930	143761931	rs2294008	22387998	Tanikawa C	2012-03-04	Nat Genet	A genome-wide association study identifies two susceptibility loci for duodenal ulcer in the Japanese population.	Duodenal ulcer	1,043 Japanese ancestry cases, 21,694 Japanese ancestry controls	5,992 Japanese ancestry cases, 3,629 Japanese ancestry controls	8q24.3	PSCA	rs2294008-C	0.37	2E-33	(Additive)	1.41	[NR]	Illumina [480327]	N
1681	chr8	143761930	143761931	rs2294008	20972438	Rothman N	2010-10-24	Nat Genet	A multi-stage genome-wide association study of bladder cancer identifies multiple susceptibility loci.	Bladder cancer	3,532 European ancestry cases, 5,120 European ancestry controls	8,381 cases, 48,275 controls	8q24.3	PSCA	rs2294008-T	0.46	4E-11		1.13	[1.09-1.17]	Illumina [589299]	N
1681	chr8	143761930	143761931	rs2294008	19648920	Wu X	2009-08-02	Nat Genet	Genetic variation in the prostate stem cell antigen gene PSCA confers susceptibility to urinary bladder cancer.	Bladder cancer	969 European ancestry cases, 957 European ancestry controls	5,698 European ancestry cases, 38,633 European ancestry controls	8q24.3	PSCA	rs2294008-T	0.46	2E-10		1.15	[1.10-1.20]	Illumina [556429]	N
1681	chr8	143762806	143762807	rs3736001	32117775	Wu J	2020-02-11	Front Oncol	The Rare Variant rs35356162 in UHRF1BP1 Increases Bladder Cancer Risk in Han Chinese Population.	Bladder cancer	995 Han Chinese ancestry cases, 1,008 Han Chinese ancestry controls	2,404 Han Chinese ancestry cases, 3,639 Han Chinese ancestry controls	8q24.3	PSCA	rs3736001-A	0.0987	5E-6		1.265		Illumina [270241]	N
1681	chr8	143763621	143763622	rs2976394	30189721	Park B	2018-09-05	Cancer Res Treat	Genome-Wide Association of Genetic Variation in the PSCA Gene with Gastric Cancer Susceptibility in a Korean Population.	Gastric cancer	297 East Asian ancestry male cases, 153 East Asian ancestry female cases, 539 East Asian ancestry male controls, 595 East Asian ancestry female controls	533 East Asian ancestry male cases, 270 East Asian ancestry female cases, 1,648 East Asian ancestry male controls, 2,045 East Asian ancestry female controls	8q24.3	PSCA	rs2976394-C	0.52	2E-13		0.7	[0.64-0.77]	Affymetrix [713348] (imputed)	N
1681	chr8	143764612	143764613	rs2976397	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gastric ulcer	12,650 East Asian ancestry cases, 161,227 East Asian ancestry controls	NA	8q24.3		rs2976397-T	0.495976505	6E-24		0.13468365	[0.11-0.16] unit decrease	Illumina [13429311] (imputed)	N
1681	chr8	143764612	143764613	rs2976397	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	8q24.3		rs2976397-T	0.4317	1E-8		0.0081	[0.0054-0.0108] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1681	chr8	143765413	143765414	rs2920293	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Vertical cup-disc ratio	21,768 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	8,168 Asian ancestry individuals	8q24.3	PSCA	rs2920293-G	NR	5E-9		0.006	[0.004-0.008] unit decrease	Affymetrix, Illumina [~ 8000000] (imputed)	N
1681	chr8	143765413	143765414	rs2920293	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Vertical cup-disc ratio	21,768 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	8,168 Asian ancestry individuals	8q24.3	PSCA	rs2920293-G	NR	3E-6	(EA)	0.006	[0.004-0.008] unit decrease	Affymetrix, Illumina [~ 8000000] (imputed)	N
1681	chr8	143769251	143769252	rs2717609	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	8q24.3		rs2717609-A	0.53	3E-8				NR [NR] (imputed)	N
1681	chr8	143769251	143769252	rs2717609	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	8q24.3		rs2717609-A	0.53	4E-11		0.01	% increase	NR [NR] (imputed)	N
1681	chr8	143769251	143769252	rs2717609	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Alanine aminotransferase levels	429,203 European ancestry individuals	NA	8q24.3		rs2717609-A	0.53	5E-7		0.01	U/L increase	NR [NR] (imputed)	N
1681	chr8	143776716	143776717	rs2585177	33002439	Jin G	2020-10-01	Lancet Oncol	Genetic risk, incident gastric cancer, and healthy lifestyle: a meta-analysis of genome-wide association studies and prospective cohort study.	Gastric cancer	10,254 Han Chinese ancestry cases, 10,914 Han Chinese ancestry controls	NA	8q24.3	NR	rs2585177-A	0.84	2E-13		0.8	NR	Affymetrix, Illumina [6957974] (imputed)	N
1681	chr8	143779622	143779624	rs35464379	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gastric ulcer	6,293 European ancestry cases, 467,985 European ancestry controls, 12,650 East Asian ancestry cases, 161,227 East Asian ancestry controls	NA	8q24.3		rs35464379-C	NR	3E-25		0.1119	[0.091-0.133] unit decrease	Affymetrix, Illumina [25842546] (imputed)	N
1682	chr8	143807650	143807651	rs3758079	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	8q24.3	NR	rs3758079-?	NR	2E-8				Illumina [7760689] (imputed)	N
1682	chr8	143836117	143836118	rs2016749	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	8q24.3		rs2016749-A	NR	2E-8		0.0143	[0.0094-0.0192] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
1682	chr8	143882419	143882420	rs2717559	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA	8q24.3	NR	rs2717559-?	NR	6E-6		0.0338	[0.019-0.048] unit decrease	Illumina [at least 560000] (imputed)	N
1683	chr8	143938576	143938577	rs28719775	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	8q24.3		rs28719775-?	NR	9E-22				NR [~ 8900000] (imputed)	N
1683	chr8	143955317	143955318	rs12543598	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	8q24.3	NR	rs12543598-T	0.445787	7E-15		0.0199058	[0.015-0.025] unit increase	Affymetrix [16585745] (imputed)	N
1683	chr8	143957404	143957405	rs6471570	34754074	Grgic O	2021-11-09	Commun Biol	CYP11B1 variants influence skeletal maturation via alternative splicing.	Skeletal age	4,557 European, African, Asian and unknown ancestry individuals	NA	8q24.3		rs6471570-A	0.41	6E-12		0.14	[0.1-0.18] increase	Illumina [9806907] (imputed)	N
1683	chr8	143957404	143957405	rs6471570	34754074	Grgic O	2021-11-09	Commun Biol	CYP11B1 variants influence skeletal maturation via alternative splicing.	Skeletal age	4,557 European, African, Asian and unknown ancestry individuals	NA	8q24.3		rs6471570-A	0.41	2E-10	(boys)	0.19	[0.13-0.25] unit increase	Illumina [9806907] (imputed)	N
1683	chr8	143957957	143957958	rs12674916	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	Androstenedione levels	1,358 European ancestry men, 712 European ancestry women	NA	8q24.3	NR	rs12674916-A	0.639	7E-6	(men)	0.0809222	[0.046-0.116] unit decrease	Affymetrix [up to 8900000] (imputed)	N
1683	chr8	143957957	143957958	rs12674916	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	Androstenedione levels	1,358 European ancestry men, 712 European ancestry women	NA	8q24.3	NR	rs12674916-A	0.639	4E-10		0.0980283	[0.067-0.129] unit decrease	Affymetrix [up to 8900000] (imputed)	N
1683	chr8	143959477	143959479	rs5895733	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	Androstenedione levels	1,358 European ancestry men, 712 European ancestry women	NA	8q24.3	NR	rs5895733-C	0.655	4E-8		0.0846384	[0.055-0.115] unit decrease	Affymetrix [up to 8900000] (imputed)	N
1683	chr8	143978423	143978424	rs10093796	29325096	Eriksson AL	2018-01-09	J Clin Endocrinol Metab	Genetic Determinants of Circulating Estrogen Levels, and Evidence of a Causal Effect of Estradiol on Bone Density in Men.	Estrone levels	7,570 European ancestry men	NA	8q24.3	CYP11B1/B2	rs10093796-T	0.43	1E-8		1.17	[0.78-1.56] pg/ml increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1683	chr8	143982960	143982961	rs62525059	34593835	Takahashi Y	2021-09-30	Sci Rep	A genome-wide association study identifies a novel candidate locus at the DLGAP1 gene with susceptibility to resistant hypertension in the Japanese population.	Resistant hypertension	2,705 Japanese ancestry cases, 21,296 Japanese ancestry controls	NA	8q24.3		rs62525059-G	0.371	3E-7		0.85	[0.8-0.91]	Illumina [7199488] (imputed)	N
1683	chr8	143982960	143982961	rs62525059	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	8q24.3	CYP11B1-CYP11B2	rs62525059-A	0.36	7E-12	(Japanese)	0.5344	[0.38-0.69] unit decrease	Illumina [6200000] (imputed)	N
1683	chr8	143982960	143982961	rs62525059	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Pulse pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 Japanese ancestry individuals	8q24.3	CYP11B1, CYP11B2	rs62525059-A	0.3638	7E-6	(Japanese)	0.2409	[0.14-0.35] unit decrease	Illumina [6200000] (imputed)	N
1683	chr8	143982960	143982961	rs62525059	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	8q24.3	CYP11B1, CYP11B2	rs62525059-A	0.3638	1E-11	(Japanese)	0.3746	[0.27-0.48] unit decrease	Illumina [6200000] (imputed)	N
1683	chr8	143982960	143982961	rs62525059	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Hypertension	22,566 Japanese ancestry cases, 28,226 Japanese ancestry controls	8,809 East Asian ancestry cases, 13,663 East Asian ancestry controls, 105,253 European ancestry individuals	8q24.3	CYP11B1, CYP11B2	rs62525059-A	0.3638	2E-8	(Japanese)	0.0787	[0.051-0.106] unit decrease	Illumina [6200000] (imputed)	N
1683	chr8	143982960	143982961	rs62525059	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	8q24.3	CYP11B1-CYP11B2	rs62525059-A	0.3638	3E-9	(Japanese)	0.2952	[0.2-0.39] unit decrease	Illumina [6200000] (imputed)	N
1683	chr8	143982960	143982961	rs62525059	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Systolic blood pressure	136,597 Japanese ancestry individuals	NA	8q24.3	CYP11B1, CYP11B2	rs62525059-?	NR	4E-12		0.02741	[0.02-0.035] unit decrease	Illumina [6108953] (imputed)	N
1683	chr8	143987426	143987427	rs4736359	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	8q24.3	NR	rs4736359-T	0.442771	6E-40		0.0370075	[0.031-0.043] unit increase	Affymetrix [16580851] (imputed)	N
1683	chr8	143991091	143991092	rs6471583	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	8q24.3	NR	rs6471583-G	0.443093	1E-19		0.0113891	[0.0088-0.0139] unit increase	Affymetrix [16578495] (imputed)	N
1683	chr8	143991857	143991858	rs7463212	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls, 49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	8q24.3		rs7463212-A	NR	5E-19		0.0524	[0.041-0.064] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1683	chr8	143991857	143991858	rs7463212	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls	NA	8q24.3	GML	rs7463212-T	0.459666	4E-9		0.04745489	[0.032-0.063] unit increase	Affymetrix [7288503] (imputed)	N
1683	chr8	143992217	143992218	rs3802228	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	8q24.3		rs3802228-G	NR	1E-12		0.0354	[0.026-0.045] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1683	chr8	143992217	143992218	rs3802228	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	8q24.3	CYP11B2	rs3802228-A	0.4325	1E-10		0.2144	[0.15-0.28] mmHg increase	Affymetrix [NR] (imputed)	N
1683	chr8	143992863	143992864	rs3802230	34822396	Pott J	2021-10-28	Metabolites	Sex-Specific Causal Relations between Steroid Hormones and Obesity-A Mendelian Randomization Study.	Androstenedione levels	3,549 individuals	NA	8q24.3		rs3802230-A	NR	3E-20		0.0934231	[0.074-0.113] unit decrease	Affymetrix [10900000] (imputed)	N
1683	chr8	143992863	143992864	rs3802230	34822396	Pott J	2021-10-28	Metabolites	Sex-Specific Causal Relations between Steroid Hormones and Obesity-A Mendelian Randomization Study.	Androstenedione levels	2,220 men	NA	8q24.3		rs3802230-A	NR	1E-13		0.0885096	[0.065-0.112] unit decrease	Affymetrix [10900000] (imputed)	N
1683	chr8	143992863	143992864	rs3802230	34822396	Pott J	2021-10-28	Metabolites	Sex-Specific Causal Relations between Steroid Hormones and Obesity-A Mendelian Randomization Study.	Androstenedione levels	1,329 women	NA	8q24.3		rs3802230-A	NR	3E-8		0.10071	[0.065-0.136] unit decrease	Affymetrix [10900000] (imputed)	N
1683	chr8	143992863	143992864	rs3802230	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	8q24.3		rs3802230-A	NR	1E-14		0.015	[0.011-0.019] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
1683	chr8	143992863	143992864	rs3802230	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	8q24.3		rs3802230-?	NR	8E-19				NR [~ 8900000] (imputed)	N
1683	chr8	143996362	143996363	rs6418	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	8q24.3	CYP11B2	rs6418-A	0.71	1E-11	(Japanese)	0.6222	[0.44-0.8] unit increase	Illumina [6200000] (imputed)	N
1683	chr8	143996362	143996363	rs6418	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	8q24.3	CYP11B2	rs6418-A	0.7077	1E-11	(Japanese)	0.4387	[0.31-0.57] unit increase	Illumina [6200000] (imputed)	N
1683	chr8	143996362	143996363	rs6418	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Hypertension	22,566 Japanese ancestry cases, 28,226 Japanese ancestry controls	8,809 East Asian ancestry cases, 13,663 East Asian ancestry controls, 105,253 European ancestry individuals	8q24.3	CYP11B2	rs6418-A	0.7077	3E-8	(Japanese)	0.0871	[0.056-0.118] unit increase	Illumina [6200000] (imputed)	N
1683	chr8	143996362	143996363	rs6418	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	8q24.3	CYP11B2	rs6418-A	0.7077	3E-9	(Japanese)	0.3474	[0.23-0.46] unit increase	Illumina [6200000] (imputed)	N
1683	chr8	143996362	143996363	rs6418	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean arterial pressure	136,482 Japanese ancestry individuals	NA	8q24.3	CYP11B2	rs6418-?	NR	9E-11		0.03049	[0.021-0.04] unit decrease novel	Illumina [6108953] (imputed)	N
1683	chr8	143996922	143996923	rs28394055	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	8q24.3		rs28394055-T	NR	7E-13		0.0147	[0.011-0.019] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1683	chr8	143997794	143997795	rs11781816	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	8q24.3		rs11781816-?	NR	6E-9				NR [~ 8900000] (imputed)	N
1683	chr8	143998087	143998088	rs12679242	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Hypertension	22,566 Japanese ancestry cases, 28,226 Japanese ancestry controls	8,809 East Asian ancestry cases, 13,663 East Asian ancestry controls, 105,253 European ancestry individuals	8q24.3	NR	rs12679242-T	0.3397	2E-11	(East Asian)	0.0804	[0.057-0.104] unit decrease	Illumina [6200000] (imputed)	N
1683	chr8	143999599	143999600	rs1799998	32709000	Jeong H	2020-07-17	Nutrients	Identifying Interactions between Dietary Sodium, Potassium, Sodium-Potassium Ratios, and FGF5 rs16998073 Variants and Their Associated Risk for Hypertension in Korean Adults.	Hypertension	8,178 Korean ancestry cases, 9,558 Korean ancestry controls	NA	8q24.3	CYP11B2	rs1799998-G	0.18	3E-8		0.87	[0.83-0.91]	Affymetrix [NR]	N
1683	chr8	144005259	144005260	rs7011889	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls, 22,356 East Asian ancestry cases, 156,370 East Asian ancestry controls	NA	8q24.3		rs7011889-C	NR	6E-14		0.0487	[0.036-0.061] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1683	chr8	144005259	144005260	rs7011889	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls	NA	8q24.3	CYP11B2	rs7011889-C	0.444985	3E-9		0.04726704	[0.032-0.063] unit decrease	Affymetrix [7288503] (imputed)	N
1683	chr8	144007103	144007104	rs6988985	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls, 20,367 East Asian ancestry cases, 158,359 East Asian ancestry controls	NA	8q24.3		rs6988985-C	NR	2E-9		0.0411	[0.028-0.054] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1683	chr8	144007103	144007104	rs6988985	28429243	Dudenkov TM	2017-04-20	Breast Cancer Res Treat	SLCO1B1 polymorphisms and plasma estrone conjugates in postmenopausal women with ER+ breast cancer: genome-wide association studies of the estrone pathway.	Plasma androstenedione levels in resected early stage-receptor positive breast cancer	707 European ancestry postmenopausal cases, 52 African ancestry postmenopausal cases, 15 Asian ancestry postmenopausal cases	NA	8q24.3	LOC100288248, CYP11B2	rs6988985-C	0.461	7E-7		0.25	[0.15-0.35] pg/mL increase	Illumina [8203257] (imputed)	N
1683	chr8	144009764	144009765	rs36176772	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	8q24.3		rs36176772-T	0.341290162	5E-12		0.059660718	[0.043-0.077] unit decrease	Illumina [13134967] (imputed)	N
1683	chr8	144020270	144020271	rs138088171	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	8q24.3	NR	rs138088171-T	0.3493	2E-14	(East Asian)	0.5203	[0.39-0.65] unit decrease	Illumina [6200000] (imputed)	N
1683	chr8	144020270	144020271	rs138088171	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	8q24.3	NR	rs138088171-T	0.3493	3E-13	(East Asian)	0.3502	[0.26-0.44] unit decrease	Illumina [6200000] (imputed)	N
1683	chr8	144020270	144020271	rs138088171	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	8q24.3	NR	rs138088171-T	0.3492	3E-11	(East Asian)	0.2861	[0.2-0.37] unit decrease	Illumina [6200000] (imputed)	N
1683	chr8	144036415	144036416	rs62524569	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	145,502 East Asian ancestry individuals	NA	8q24.3		rs62524569-C	0.35942	4E-10		0.0223724	[0.015-0.029] unit decrease	Illumina [13477767] (imputed)	N
1683	chr8	144042623	144042624	rs9692989	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	145,505 East Asian ancestry individuals	NA	8q24.3		rs9692989-T	0.359305	9E-12		0.0237427	[0.017-0.031] unit decrease	Illumina [13477770] (imputed)	N
1684	chr8	144058624	144058625	rs9692804	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	Testosterone levels	4,291 European ancestry men, 3,352 European ancestry women	NA	8q24.3	NR	rs9692804-A	0.426	4E-6		0.04795	[0.028-0.068] unit increase	Affymetrix [up to 8900000] (imputed)	N
1684	chr8	144058624	144058625	rs9692804	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	Androstenedione levels	1,358 European ancestry men, 712 European ancestry women	NA	8q24.3	NR	rs9692804-A	0.426	5E-7	(men)	0.0817186	[0.05-0.113] unit increase	Affymetrix [up to 8900000] (imputed)	N
1684	chr8	144058624	144058625	rs9692804	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	Androstenedione levels	1,358 European ancestry men, 712 European ancestry women	NA	8q24.3	NR	rs9692804-A	0.426	3E-10		0.0900147	[0.062-0.118] unit increase	Affymetrix [up to 8900000] (imputed)	N
1684	chr8	144060954	144060955	rs62524579	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	8q24.3		rs62524579-A	NR	3E-16		0.0155	[0.012-0.019] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1684	chr8	144060954	144060955	rs62524579	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	8q24.3		rs62524579-A	NR	1E-8		0.0105	[0.007-0.014] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
1684	chr8	144060954	144060955	rs62524579	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	145,445 East Asian ancestry individuals	NA	8q24.3		rs62524579-A	0.383966	3E-8		0.0195896	[0.013-0.027] unit decrease	Illumina [13477769] (imputed)	N
1684	chr8	144060954	144060955	rs62524579	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	8q24.3	LOC105375794-LOC100133669	rs62524579-A	0.38	7E-9	(Japanese)	0.5532	[0.37-0.74] unit decrease	Illumina [6200000] (imputed)	N
1684	chr8	144060954	144060955	rs62524579	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Pulse pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 Japanese ancestry individuals	8q24.3	LOC105375794, LOC100133669	rs62524579-A	0.3776	6E-6	(Japanese)	0.2989	[0.17-0.43] unit decrease	Illumina [6200000] (imputed)	N
1684	chr8	144060954	144060955	rs62524579	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	8q24.3	LOC105375794, LOC100133669	rs62524579-A	0.3776	2E-7	(Japanese)	0.3536	[0.22-0.49] unit decrease	Illumina [6200000] (imputed)	N
1684	chr8	144060954	144060955	rs62524579	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Hypertension	22,566 Japanese ancestry cases, 28,226 Japanese ancestry controls	8,809 East Asian ancestry cases, 13,663 East Asian ancestry controls, 105,253 European ancestry individuals	8q24.3	LOC105375794, LOC100133669	rs62524579-A	0.3776	6E-7	(Japanese)	0.0841	[0.051-0.117] unit decrease	Illumina [6200000] (imputed)	N
1684	chr8	144060954	144060955	rs62524579	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Diastolic blood pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	8q24.3	RP11-273G15.2	rs62524579-A	0.53	4E-9		0.175	[0.12-0.23] unit decrease	Affymetrix [~ 9800000] (imputed)	N
1684	chr8	144060954	144060955	rs62524579	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	8q24.3	CYP11B2, LOC100133669	rs62524579-G		8E-6		0.249	unit increase	Affymetrix [at least 2696785] (imputed)	N
1684	chr8	144060954	144060955	rs62524579	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	8q24.3	CYP11B2, LOC100133669	rs62524579-G		3E-10		0.244	unit increase	Affymetrix [at least 2696785] (imputed)	N
1684	chr8	144060954	144060955	rs62524579	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	8q24.3	CYP11B2, LOC100133669	rs62524579-G		6E-10		0.147	unit increase	Affymetrix [at least 2696785] (imputed)	N
1684	chr8	144115975	144115976	rs187705391	29698431	Roosenboom J	2018-04-26	PLoS One	Mapping genetic variants for cranial vault shape in humans.	Maximum cranial length	4,419 European ancestry individuals	NA	8q24.3	NR	rs187705391-T	0.01471	9E-7		2.332	[0.78-3.88] unit decrease	Illumina [at least 567677] (imputed)	N
1684	chr8	144175848	144175849	rs4977129	31263163	Liu CT	2019-07-01	Sci Rep	Genome-wide Association Study of Change in Fasting Glucose over time in 13,807 non-diabetic European Ancestry Individuals.	Fasting glucose change (long-term)	3,669 European ancestry individuals	NA	8q24.3	C8orf31	rs4977129-A	0.245	5E-6		0.124	[0.071-0.177] unit decrease	Affymetrix, Illumina [~ 25000000] (imputed)	N
1685	chr8	144241913	144241914	rs62523388	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	8q24.3	Intergenic	rs62523388-A	0.3277	5E-9	(MTAG)	0.0112	[0.0075-0.0149] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1685	chr8	144241913	144241914	rs62523388	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	8q24.3	Intergenic	rs62523388-C	0.6723	4E-9		0.0122	[0.0081-0.0163] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1685	chr8	144260138	144260139	rs56068534	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	8q24.3	NR	rs56068534-C	0.569	3E-9		0.00650061	[0.0043-0.0087] unit increase	NR [9732723] (imputed)	N
1685	chr8	144297019	144297020	rs78123380	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	8q24.3	GPIHBP1	rs78123380-A	0.1585	3E-9		0.0473	[0.032-0.063] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1685	chr8	144300759	144300760	rs56960668	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphatidylcholine levels	115,006 European ancestry individuals	NA	8q24.3		rs56960668-G	0.72224	7E-9		0.0249783	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
1685	chr8	144300759	144300760	rs56960668	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	8q24.3	GPIHBP1, ZFP41	rs56960668-A	NR	9E-12	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1685	chr8	144300759	144300760	rs56960668	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	8q24.3	GPIHBP1, ZFP41	rs56960668-A	NR	7E-16				Affymetrix, Illumina [NR] (imputed)	N
1685	chr8	144300759	144300760	rs56960668	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	8q24.3	GPIHBP1, ZFP41	rs56960668-A	NR	8E-18				Affymetrix, Illumina [NR] (imputed)	N
1685	chr8	144300759	144300760	rs56960668	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	8q24.3	GPIHBP1, ZFP41	rs56960668-A	NR	8E-13	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1685	chr8	144300759	144300760	rs56960668	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	8q24.3	GPIHBP1, ZFP41	rs56960668-A	NR	2E-9	(EA)	0.008	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1685	chr8	144300759	144300760	rs56960668	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	8q24.3	GPIHBP1, ZFP41	rs56960668-A	NR	1E-12		0.007	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1685	chr8	144300759	144300760	rs56960668	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	8q24.3	GPIHBP1, ZFP41	rs56960668-A	NR	2E-6	(EA)	0.009393	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1685	chr8	144300759	144300760	rs56960668	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	8q24.3	GPIHBP1, ZFP41	rs56960668-A	NR	2E-10		0.00739	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1685	chr8	144300759	144300760	rs56960668	30670697	Kilpelainen TO	2019-01-22	Nat Commun	Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity.	HDL cholesterol x physical activity interaction (2df test)	7,395 African American inactive individuals, 13,092 African American active individuals, 2,753 Asian ancestry inactive individuals, 3,650 Asian ancestry active individuals, 22,963 European ancestry inactive individuals, 61,939 European ancestry active individuals, 2,829 Hispanic or Latin American inactive individuals, 6,358 Hispanic or Latin American active individuals	1,886 African American inactive individuals, 1,892 African American active individuals, 1,217 South African Black ancestry inactive individuals, 389 South African Black ancestry active individuals, 2,494 East Asian ancestry inactive individuals, 1,947 East Asian ancestry active individuals,  724 South Asian ancestry inactive individuals, 1,425 South Asian ancestry active individuals, 41,042 European ancestry inactive individuals, 66,575 European ancestry active individuals, 2,619 Hispanic inactive individuals, 8,802 Hispanic active individuals	8q24.3	NR	rs56960668-A	0.3073	4E-9				Affymetrix, Illumina [at least 2500000] (imputed)	N
1685	chr8	144302569	144302570	rs7817574	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in HDL	115,082 European ancestry individuals	NA	8q24.3		rs7817574-T	0.814667	4E-11		0.0314527	[0.022-0.041] unit decrease	NR [11722792] (imputed)	N
1685	chr8	144302569	144302570	rs7817574	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	8q24.3	GPIHBP1	rs7817574-T	0.814995	4E-42		0.0331636	[0.028-0.038] unit decrease	Affymetrix [NR] (imputed)	N
1685	chr8	144302569	144302570	rs7817574	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	8q24.3	GPIHBP1	rs7817574-T	0.815097	1E-46		0.0361808	[0.031-0.041] unit decrease	Affymetrix [NR] (imputed)	N
1685	chr8	144303070	144303071	rs6420185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium HDL	115,082 European ancestry individuals	NA	8q24.3		rs6420185-G	0.612183	1E-9		0.0252245	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
1685	chr8	144303070	144303071	rs6420185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in HDL	115,082 European ancestry individuals	NA	8q24.3		rs6420185-G	0.612183	2E-8		0.0233711	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
1685	chr8	144303070	144303071	rs6420185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	8q24.3		rs6420185-G	0.612183	3E-10		0.0260628	[0.018-0.034] unit increase	NR [11722792] (imputed)	N
1685	chr8	144303070	144303071	rs6420185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	8q24.3		rs6420185-G	0.612183	5E-10		0.0258861	[0.018-0.034] unit increase	NR [11722792] (imputed)	N
1685	chr8	144303417	144303418	rs10087900	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	265,204 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q24.3	NR	rs10087900-G	NR	2E-9		0.027	unit increase	Affymetrix [at least 7091467] (imputed)	N
1685	chr8	144303752	144303753	rs60987469	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	8q24.3		rs60987469-C	0.81757	5E-18		0.0446201	[0.035-0.055] unit decrease	NR [11722792] (imputed)	N
1685	chr8	144303752	144303753	rs60987469	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	8q24.3		rs60987469-C	0.817594	2E-11		0.0342829	[0.024-0.044] unit increase	NR [11722792] (imputed)	N
1685	chr8	144304940	144304941	rs7460860	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large HDL	115,082 European ancestry individuals	NA	8q24.3		rs7460860-C	0.612751	4E-15		0.0316612	[0.024-0.04] unit decrease	NR [11722792] (imputed)	N
1685	chr8	144305352	144305353	rs7388248	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium HDL	115,082 European ancestry individuals	NA	8q24.3		rs7388248-G	0.723101	4E-12		0.0298126	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
1685	chr8	144305352	144305353	rs7388248	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium HDL	115,082 European ancestry individuals	NA	8q24.3		rs7388248-G	0.723101	6E-13		0.0311257	[0.023-0.04] unit decrease	NR [11722792] (imputed)	N
1685	chr8	144305352	144305353	rs7388248	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in HDL	115,082 European ancestry individuals	NA	8q24.3		rs7388248-G	0.723101	1E-12		0.0296923	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
1685	chr8	144305352	144305353	rs7388248	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	8q24.3		rs7388248-G	0.723101	1E-10		0.0271449	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
1685	chr8	144305352	144305353	rs7388248	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium HDL particles	115,082 European ancestry individuals	NA	8q24.3		rs7388248-G	0.723101	2E-11		0.0287442	[0.02-0.037] unit decrease	NR [11722792] (imputed)	N
1685	chr8	144305352	144305353	rs7388248	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium HDL	115,082 European ancestry individuals	NA	8q24.3		rs7388248-G	0.723101	6E-9		0.0249232	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
1685	chr8	144305352	144305353	rs7388248	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	8q24.3		rs7388248-G	0.723101	2E-9		0.0254753	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
1685	chr8	144305352	144305353	rs7388248	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein A1 levels	115,082 European ancestry individuals	NA	8q24.3		rs7388248-G	0.723101	8E-11		0.0275701	[0.019-0.036] unit decrease	NR [11722792] (imputed)	N
1685	chr8	144305666	144305667	rs79744701	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large HDL	115,082 European ancestry individuals	NA	8q24.3		rs79744701-G	0.87591	2E-10		0.0350305	[0.024-0.046] unit decrease	NR [11722792] (imputed)	N
1685	chr8	144305666	144305667	rs79744701	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	8q24.3		rs79744701-G	0.87593	3E-9		0.0329074	[0.022-0.044] unit increase	NR [11722792] (imputed)	N
1685	chr8	144305666	144305667	rs79744701	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	8q24.3		rs79744701-G	0.87591	2E-8		0.0307642	[0.02-0.042] unit decrease	NR [11722792] (imputed)	N
1685	chr8	144305666	144305667	rs79744701	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in HDL	115,082 European ancestry individuals	NA	8q24.3		rs79744701-G	0.87591	1E-9		0.0335832	[0.023-0.044] unit decrease	NR [11722792] (imputed)	N
1685	chr8	144305666	144305667	rs79744701	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	8q24.3	NR	rs79744701-A	NR	6E-21		0.0355	[0.028-0.043] unit increase	Affymetrix [9000000] (imputed)	N
1685	chr8	144305666	144305667	rs79744701	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	8q24.3	NR	rs79744701-A	NR	8E-24		0.0382	[0.031-0.046] unit increase	Affymetrix [9000000] (imputed)	N
1685	chr8	144306378	144306379	rs7832515	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	8q24.3		rs7832515-A	0.812211	7E-11		0.031862	[0.022-0.041] unit decrease	NR [11722792] (imputed)	N
1685	chr8	144306378	144306379	rs7832515	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	8q24.3		rs7832515-G	NR	2E-36		0.0333	[0.028-0.038] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
1685	chr8	144306597	144306597	rs11434143	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	8q24.3		rs11434143-G	0.810823	2E-9		0.0282139	[0.019-0.037] unit decrease	NR [11722792] (imputed)	N
1685	chr8	144306597	144306597	rs11434143	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	HDL cholesterol levels	115,082 European ancestry individuals	NA	8q24.3		rs11434143-G	0.810823	4E-8		0.0263746	[0.017-0.036] unit decrease	NR [11722792] (imputed)	N
1685	chr8	144306597	144306597	rs11434143	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	8q24.3		rs11434143-G	0.810823	6E-9		0.0273275	[0.018-0.037] unit decrease	NR [11722792] (imputed)	N
1685	chr8	144306597	144306597	rs11434143	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	8q24.3		rs11434143-G	0.810823	7E-10		0.0292838	[0.02-0.039] unit decrease	NR [11722792] (imputed)	N
1685	chr8	144306597	144306597	rs11434143	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	8q24.3		rs11434143-GT	NR	1E-8		0.0149	[0.0098-0.02] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
1685	chr8	144306969	144306970	rs72691637	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	8q24.3	GPIHBP1	rs72691637-G	0.812946	3E-9		0.0152592	[0.01-0.02] unit increase	Affymetrix [NR] (imputed)	N
1685	chr8	144307678	144307679	rs72691638	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	8q24.3	NR	rs72691638-C	NR	6E-10		0.0157	[0.011-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
1685	chr8	144310056	144310057	rs6987719	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	8q24.3		rs6987719-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1686	chr8	144310589	144310590	rs190629717	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	8q24.3		rs190629717-G	0.759	5E-8		0.07	[-0.1--0.05] % decrease	Affymetrix [NR] (imputed)	N
1686	chr8	144333835	144333836	rs4495442	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	8q24.3		rs4495442-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1686	chr8	144343972	144343973	rs4997225	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	8q24.3	ZFP41	rs4997225-G	NR	1E-8		0.017769	[0.012-0.024] unit decrease	Affymetrix [323123] (imputed)	N
1686	chr8	144356056	144356057	rs11136278	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	8q24.3	ZFP41, GLI4	rs11136278-A	NR	8E-9		0.0207519	[0.014-0.028] unit increase	Affymetrix [323123] (imputed)	N
1686	chr8	144359146	144359147	rs2293922	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	8q24.3		rs2293922-G	0.21	5E-8		5.46	z score increase	Affymetrix [9061022] (imputed)	N
1686	chr8	144359146	144359147	rs2293922	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	8q24.3		rs2293922-?	NR	3E-32				NR [~ 8900000] (imputed)	N
1686	chr8	144372651	144372652	rs2272633	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	8q24.3		rs2272633-C	0.856328	6E-14		0.0217168	[0.016-0.027] unit decrease	Illumina [13479295] (imputed)	N
1686	chr8	144375858	144375859	rs11136280	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	8q24.3	ZNF696	rs11136280-G	0.752984	2E-12		0.0175093	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1686	chr8	144375858	144375859	rs11136280	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q24.3	NR	rs11136280-G	0.75213	1E-15				Affymetrix, Illumina [24246363] (imputed)	N
1686	chr8	144375858	144375859	rs11136280	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	8q24.3	NR	rs11136280-G	0.752397	7E-15		0.017816	[0.013-0.022] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1686	chr8	144393458	144393459	rs7002559	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	8q24.3	TOP1MT	rs7002559-T	NR	1E-8		0.0235089	[0.015-0.032] unit increase	Affymetrix [323123] (imputed)	N
1686	chr8	144402337	144402338	rs62524728	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	8q24.3	TOP1MT	rs62524728-?	NR	1E-15		0.03289672	[0.025-0.041] unit decrease	Illumina [27896057] (imputed)	N
1687	chr8	144468437	144468438	rs744359	28360221	Boger CA	2017-03-30	J Am Soc Nephrol	NFAT5 and SLC4A10 Loci Associate with Plasma Osmolality.	Blood osmolality (transformed sodium)	45,889 European ancestry individuals, up to 8,765 Asian Indian ancestry individuals, up to 7,215 African ancestry individuals	17,637 European ancestry individuals	8q24.3	NR	rs744359-T	0.83	5E-6	(Asian)	0.14	[0.08-0.2] unit decrease	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1687	chr8	144496771	144496772	rs4875043	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	8q24.3	MAFA	rs4875043-A	0.783179	1E-10		0.0149835	[0.01-0.02] unit increase	Affymetrix [NR] (imputed)	N
1687	chr8	144496771	144496772	rs4875043	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	8q24.3	MAFA	rs4875043-A	0.783158	3E-10		0.0151542	[0.01-0.02] unit increase	Affymetrix [NR] (imputed)	N
1687	chr8	144506132	144506133	rs13267937	31609978	Huang L	2019-10-14	PLoS Genet	Genetic factors define CPO and CLO subtypes of nonsyndromicorofacial cleft.	Nonsyndromic cleft palate	930 Southern Han Chinese ancestry cases, 5,048 Southern Han Chinese ancestry controls	1,141 Han Chinese ancestry cases, 5,097 Han Chinese ancestry controls	8q24.3	MAFA-AS1, MAFA	rs13267937-G	0.055	1E-6		1.472	NR	Illumina [at least 870261] (imputed)	N
1687	chr8	144553200	144553201	rs35110652	31752434	Costa-Urrutia P	2019-11-19	Genes (Basel)	Genome-Wide Association Study of Body Mass Index and Body Fat in Mexican-Mestizo Children.	Body fat percentage	828 Mexican-Mestizo ancestry children	NA	8q24.3	ZC3H3	rs35110652-C	0.015	5E-8		0.1	NR unit increase	Affymetrix [~ 2500000] (imputed)	N
1688	chr8	144576848	144576849	rs410836	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	8q24.3		rs410836-G	NR	8E-10		0.0149	[0.01-0.02] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1688	chr8	144610032	144610033	rs921667	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8q24.3	NR	rs921667-C	0.1429	1E-8	(HNRNPR)	0.04764	NR unit increase	Illumina [1671387] (imputed)	N
1688	chr8	144626720	144626721	rs73715668	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	8q24.3		rs73715668-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1688	chr8	144638733	144638734	rs10099546	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	8q24.3		rs10099546-G	NR	7E-10		0.0207	[0.014-0.027] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
1688	chr8	144638733	144638734	rs10099546	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	8q24.3	GSDMD	rs10099546-G	0.142238	2E-11		0.021416456	[0.015-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
1688	chr8	144638733	144638734	rs10099546	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q24.3	NR	rs10099546-G	0.180782	3E-11				Affymetrix, Illumina [23467995] (imputed)	N
1688	chr8	144638733	144638734	rs10099546	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	8q24.3	NR	rs10099546-G	0.143315	4E-13		0.020315	[0.015-0.026] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1688	chr8	144643168	144643169	rs1545536	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	8q24.3		rs1545536-T	NR	3E-10		0.0158	[0.011-0.021] unit decrease	Affymetrix, Illumina [20529698] (imputed)	N
1688	chr8	144643168	144643169	rs1545536	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	8q24.3	GSDMD	rs1545536-T	0.22	3E-10		6.28	z-score increase	Affymetrix [4312306] (imputed)	N
1688	chr8	144643168	144643169	rs1545536	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	8q24.3	NR	rs1545536-C	0.780413	6E-19		0.0202871	[0.016-0.025] unit increase	NR [NR]	N
1688	chr8	144643168	144643169	rs1545536	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	8q24.3		rs1545536-T	0.21697200000000005	5E-23		1.0529269	[1.04-1.06]	Affymetrix, Illumina [9851866] (imputed)	N
1688	chr8	144645512	144645513	rs13266821	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	8q24.3	NR	rs13266821-T	NR	4E-10		0.0209	[0.014-0.028] unit decrease	Affymetrix [9000000] (imputed)	N
1688	chr8	144651061	144651062	rs80190095	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	8q24.3		rs80190095-G	NR	1E-8		0.0146	[0.0095-0.0197] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
1688	chr8	144653527	144653528	rs11352430	28762467	Wadelius M	2017-08-01	Clin Pharmacol Ther	Sulfasalazine-Induced Agranulocytosis Is Associated With the Human Leukocyte Antigen Locus.	Sulfasalazine-induced agranulocytosis	36 European ancestry cases, 5,170 European ancestry untreated controls	NA	8q24.3	MROH6	rs11352430-?	NR	6E-7		3.63	[2.19-6.02]	Illumina [9380034] (imputed)	N
1688	chr8	144654593	144654594	rs4873803	31268507	Periyasamy S	2019-07-03	JAMA Psychiatry	Association of Schizophrenia Risk With Disordered Niacin Metabolism in an Indian Genome-wide Association Study.	Schizophrenia	816 Indian ancestry cases, 900 Indian ancestry controls, 505 Indian ancestry cases and 871 Indian ancestry controls from 405 families, up to 36,989 European and unknown ancestry cases, up to 113,075 European and unknown ancestry controls	NA	8q24.3	GSDMD, MROH6, NAPRT1, EEF1D, TIGD5, PYCRL	rs4873803-?	NR	1E-9				Illumina [up to 5582932] (imputed)	N
1688	chr8	144655314	144655315	rs10866912	31268507	Periyasamy S	2019-07-03	JAMA Psychiatry	Association of Schizophrenia Risk With Disordered Niacin Metabolism in an Indian Genome-wide Association Study.	Schizophrenia	816 Indian ancestry cases, 900 Indian ancestry controls, 505 Indian ancestry cases and 871 Indian ancestry controls from 405 families, up to 36,989 European and unknown ancestry cases, up to 113,075 European and unknown ancestry controls	NA	8q24.3	GSDMD, MROH6, NAPRT1, EEF1D, TIGD5, PYCRL	rs10866912-A	0.72	4E-8	(South Asian)	1.27	[1.17-1.38]	Illumina [up to 5582932] (imputed)	N
1688	chr8	144656753	144656754	rs4606077	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Interleukin-18 levels	21,758 European ancestry individuals	9,173 individuals	8q24.3		rs4606077-T	0.24	4E-17		0.0833	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1688	chr8	144657599	144657600	rs2290416	18821565	Lasky-Su J	2008-12-05	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association scan of quantitative traits for attention deficit hyperactivity disorder identifies novel associations and confirms candidate gene associations.	Attention deficit hyperactivity disorder	930 European ancestry trios	NA	8q24.3	NAPRT1	rs2290416-?	NR	9E-6	(count)			Perlegen [429981]	N
1688	chr8	144658369	144658370	rs896955	33437055	Panyard DJ	2021-01-12	Commun Biol	Cerebrospinal fluid metabolomics identifies 19 brain-related phenotype associations.	1-ribosyl-imidazoleacetate levels	291 European ancestry individuals	NA	8q24.3		rs896955-T	0.1655	3E-42		0.2118	unit decrease	Illumina [7049691] (imputed)	N
1688	chr8	144664298	144664299	rs3793371	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	8q24.3	NR	rs3793371-A	0.06272	2E-8	(RPL30)	0.06128	NR unit increase	Illumina [1671387] (imputed)	N
1688	chr8	144678873	144678874	rs2242095	29855537	Hirata T	2018-05-31	Sci Rep	Japanese GWAS identifies variants for bust-size, dysmenorrhea, and menstrual fever that are eQTLs for relevant protein-coding or long non-coding RNAs.	Menstruation quality of life impact (acne)	1,115 Japanese ancestry female cases, 4,619 Japanese ancestry female controls	1,204 Japanese ancestry female cases, 4,410 Japanese ancestry female controls	8q24.3	NR	rs2242095-T	0.150026652	1E-6		0.21825656	[0.13-0.31] unit increase	Affymetrix [536506]	N
1688	chr8	144682310	144682311	rs3210186	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	8q24.3	TIGD5	rs3210186-C	NR	1E-13		0.0298126	[0.022-0.038] unit increase	Affymetrix [16832071] (imputed)	N
1688	chr8	144684946	144684947	rs115968937	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	8q24.3	NR	rs115968937-?	NR	9E-6		4.429	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1688	chr8	144688735	144688736	rs2242090	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	8q24.3	PYCRL	rs2242090-C	0.58058	5E-144	(S-1-pyrroline-5-carboxylate)	0.592	[0.55-0.64] unit increase	Illumina [13039987] (imputed)	N
1688	chr8	144688735	144688736	rs2242090	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	8q24.3	PYCRL	rs2242090-G	0.540636	7E-40		0.029459761	[0.025-0.034] unit increase	Affymetrix [93095623] (imputed)	N
1688	chr8	144688735	144688736	rs2242090	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q24.3	NR	rs2242090-C	0.475152	4E-42				Affymetrix, Illumina [22063850] (imputed)	N
1688	chr8	144688735	144688736	rs2242090	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	8q24.3	NR	rs2242090-C	0.459714	6E-44		0.027661	[0.024-0.032] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
1688	chr8	144688735	144688736	rs2242090	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	8q24.3		rs2242090-?	NR	4E-46				NR [~ 8900000] (imputed)	N
1688	chr8	144692970	144692971	rs3812442	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	8q24.3	PYCRL	rs3812442-C	0.628892	6E-9		0.0133117	[0.0089-0.0178] unit decrease	Affymetrix [93095623] (imputed)	N
1688	chr8	144693838	144693839	rs2045084	23585552	Kirin M	2013-04-11	Hum Mol Genet	Genome-wide association study identifies genetic risk underlying primary rhegmatogenous retinal detachment.	Rhegmatogenous retinal detachment	867 European ancestry cases, 1,953 European ancestry controls	1,966 European ancestry cases, 5,918 European ancestry controls	8q24.3	TSTA3, PYCRL	rs2045084-G	0.425	3E-6		1.16	[1.09-1.24]	Illumina [299737]	N
1688	chr8	144695498	144695499	rs2242086	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	8q24.3	TSTA3	rs2242086-C	0.777636	1E-55	(S-1-pyrroline-5-carboxylate)	0.426	[0.37-0.48] unit decrease	Illumina [13039987] (imputed)	N
1689	chr8	144722419	144722420	rs111960002	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Squamous cell lung carcinoma	7,426 European ancestry cases, 55,627 European ancestry controls	NA	8q24.3	ZNF623	rs111960002-C	0.045638836	5E-7		1.3636285	[1.208731312-1.538375627]	Illumina [10439017] (imputed)	N
1689	chr8	144791125	144791126	rs10100154	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	8q24.3	NR	rs10100154-G	0.783189	2E-8		0.0482252	[0.032-0.064] unit increase	Affymetrix [17914406] (imputed)	N
1689	chr8	144802455	144802456	rs35925379	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	8q24.3	MAPK15	rs35925379-A	0.052	2E-6	(IGFBP-3 )	0.03	[NR] ng/mL increase	Illumina [899892]	N
1689	chr8	144808544	144808545	rs201821244	30175238	Jackson VE	2018-01-12	Wellcome Open Res	Meta-analysis of exome array data identifies six novel genetic loci for lung function.	Lung function (FEV1/FVC)	60,749 European ancestry individuals, 7,721 African ancestry individuals	111,556 European ancestry individuals	8q24.3	FAM83H	rs201821244-G	2.0E-5	5E-6		4.584	unit decrease	Illumina [179215]	N
1690	chr8	144837329	144837330	rs9650469	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	8q24.3		rs9650469-?	NR	2E-18				NR [~ 8900000] (imputed)	N
1690	chr8	144839146	144839147	rs11784536	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	8q24.3	NR	rs11784536-A	NR	5E-6		1.06	[NR]	Illumina [7158791] (imputed)	N
1690	chr8	144870109	144870110	rs7003115	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	8q24.3		rs7003115-A	0.07	4E-13		7.27	z score increase	Affymetrix [9061022] (imputed)	N
1690	chr8	144872339	144872340	rs116846420	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	8q24.3	NR	rs116846420-A	NR	4E-10		0.0551	[0.038-0.072] unit increase	Affymetrix [9000000] (imputed)	N
1690	chr8	144872410	144872411	rs4875053	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	8q24.3	SCRIB, PARP10	rs4875053-G	0.44	1E-8		0.03	[0.018-0.042] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
1690	chr8	144876158	144876159	rs7460093	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	8q24.3		rs7460093-A	NR	2E-10		0.0133	[0.0092-0.0174] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1690	chr8	144902713	144902714	rs4076877	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Diastolic blood pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	8q24.3	chr8mb144	rs4076877-T	0.049077341	4E-8		0.4184	[0.27-0.57] unit decrease	Affymetrix [~ 9800000] (imputed)	N
1690	chr8	144963559	144963560	rs117450898	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	8q24.3	NR	rs117450898-T	NR	5E-11		0.0668	[0.047-0.087] unit increase	Affymetrix [9000000] (imputed)	N
1691	chr8	144966242	144966243	rs11993287	33745150	de Coo A	2021-03-21	J Clin Periodontol	Genome-wide association study of stage III/IV grade C periodontitis (former aggressive periodontitis) in a Spanish population.	Periodontitis (stage III/IV grade C)	465 Spanish ancestry cases, 1,179 Spanish ancestry controls	NA	8q24.3	PLEC	rs11993287-A	0.38	4E-6		0.58	[0.46-0.73]	Affymetrix [645639] (imputed)	N
1691	chr8	144972453	144972454	rs7845662	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	8q24.3		rs7845662-?	NR	1E-7				NR [~ 8900000] (imputed)	N
1691	chr8	144976571	144976572	rs4077669	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	8q24.3	Intergenic	rs4077669-A	0.566	3E-6		0.042	NR unit decrease	Illumina [NR] (imputed)	N
1691	chr8	144976719	144976720	rs7010805	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	8q24.3	Intergenic	rs7010805-T	0.47	6E-7		0.047	NR unit decrease	Illumina [NR] (imputed)	N
1691	chr8	144977278	144977279	rs4073900	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	8q24.3	PLEC	rs4073900-C	NR	5E-10		0.0182804	[0.013-0.024] unit increase	Affymetrix [321788] (imputed)	N
1691	chr8	144977874	144977875	rs76983122	28916551	Liu Y	2017-09-15	J Rheumatol	Genetic Determinants of Radiographic Knee Osteoarthritis in African Americans.	Knee osteoarthritis	742 African American cases, 475 African American controls	NA	8q24.3	EPPK1, PLEC	rs76983122-T	0.11	5E-7		2.31	[1.67-3.20]	Illumina [8300000] (imputed)	N
1691	chr8	144981487	144981488	rs56233017	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	8q24.3	PLEC	rs56233017-A	0.0447	5E-12		0.2669	[0.19-0.34] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1691	chr8	144981487	144981488	rs56233017	27798624	Eppinga RN	2016-10-31	Nat Genet	Identification of genomic loci associated with resting heart rate and shared genetic predictors with all-cause mortality.	Resting heart rate	127,919 European ancestry individuals, 2,478 Asian ancestry individuals, 1,734 Black individuals, 684 Mixed ancestry individuals, 1,436 individuals	130,795 European ancestry individuals	8q24.3	PLEC	rs56233017-A	0.04	1E-15		0.6662	[0.5-0.83] unit decrease	Affymetrix [19941912] (imputed)	N
1691	chr8	144981497	144981498	rs7461753	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	8q24.3	Intergenic	rs7461753-A	0.624	2E-6		0.045	NR unit decrease	Illumina [NR] (imputed)	N
1691	chr8	144983492	144983493	rs56077246	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	8q24.3	Intergenic	rs56077246-T	0.621	2E-6		0.046	NR unit decrease	Illumina [NR] (imputed)	N
1691	chr8	144984282	144984283	rs7015048	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	8q24.3	intergenic	rs7015048-T	0.526	7E-16		0.0153	[0.012-0.019] unit increase	Affymetrix [18391927] (imputed)	N
1691	chr8	144984282	144984283	rs7015048	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	8q24.3	Intergenic	rs7015048-T	0.537	2E-6		0.042	NR unit decrease	Illumina [NR] (imputed)	N
1691	chr8	144984344	144984345	rs80120848	34785643	Park JY	2021-11-16	Transl Psychiatry	A missense variant in SHARPIN mediates Alzheimer's disease-specific brain damages.	Hippocampal volume	2,643 Korean ancestry individuals	NA	8q24.3		rs80120848-A	0.02	2E-7		0.51	[0.43-0.59] unit decrease	NR [3930740] (imputed)	N
1691	chr8	144984955	144984956	rs7840395	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Switched memory B cell %lymphocyte	3,656 Sardinian (founder/genetic isolate) ancestry individuals	NA	8q24.3		rs7840395-G	0.5715	1E-8		0.1437	[0.094-0.193] unit decrease	Illumina [18238287] (imputed)	N
1691	chr8	144984955	144984956	rs7840395	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	IgD- CD38dim B cell %lymphocyte	3,656 Sardinian (founder/genetic isolate) ancestry individuals	NA	8q24.3		rs7840395-G	0.5715	8E-9		0.1408	[0.093-0.189] unit decrease	Illumina [18238287] (imputed)	N
1691	chr8	144986102	144986103	rs11777835	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	8q24.3	NR	rs11777835-?		1E-9	(Genu of corpus callosum)			NR [8955960] (imputed)	N
1691	chr8	144986102	144986103	rs11777835	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	8q24.3	NR	rs11777835-?		5E-9	(Genu of corpus callosum)			NR [8955960] (imputed)	N
1691	chr8	144986677	144986678	rs3923388	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	8q24.3	Intergenic	rs3923388-A	0.378	3E-6		0.045	NR unit increase	Illumina [NR] (imputed)	N
1691	chr8	144986792	144986793	rs3923387	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	8q24.3	EPPK1	rs3923387-T	NR	2E-8		1.0639	NR	Affymetrix, Illumina [8278136] (imputed)	N
1691	chr8	144986792	144986793	rs3923387	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	8q24.3	Intergenic	rs3923387-T	0.378	1E-6		0.047	NR unit increase	Illumina [NR] (imputed)	N
1691	chr8	144987220	144987221	rs6990361	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	8q24.3	Intergenic	rs6990361-T	0.377	1E-6		0.047	NR unit increase	Illumina [NR] (imputed)	N
1691	chr8	144989461	144989462	rs7155	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	8q24.3	PLEC	rs7155-A	0.509	3E-6		0.043	NR unit decrease	Illumina [NR] (imputed)	N
1691	chr8	144989465	144989466	rs117961539	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	8q24.3		rs117961539-?	NR	7E-11				NR [~ 8900000] (imputed)	N
1691	chr8	144990334	144990335	rs1065837	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	8q24.3	PLEC	rs1065837-A	0.379	1E-6		0.047	NR unit increase	Illumina [NR] (imputed)	N
1691	chr8	144992360	144992361	rs7822511	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	8q24.3		rs7822511-C	0.43	3E-10		6.28	z score increase	Affymetrix [9061022] (imputed)	N
1691	chr8	144992861	144992862	rs7819099	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Natural Killer T Absolute Count	3,653 Sardinian (founder/genetic isolate) ancestry individuals	NA	8q24.3		rs7819099-G	0.51203	3E-8		0.1387	[0.09-0.188] unit increase	Illumina [18427377] (imputed)	N
1691	chr8	144992861	144992862	rs7819099	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Natural Killer T %lymphocyte	3,669 Sardinian (founder/genetic isolate) ancestry individuals	NA	8q24.3		rs7819099-G	0.5115700000000001	3E-9		0.1488	[0.1-0.198] unit increase	Illumina [18430820] (imputed)	N
1691	chr8	144992861	144992862	rs7819099	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Natural Killer T %T cell	3,669 Sardinian (founder/genetic isolate) ancestry individuals	NA	8q24.3		rs7819099-G	0.5115700000000001	3E-9		0.148	[0.099-0.197] unit increase	Illumina [18430820] (imputed)	N
1691	chr8	144992861	144992862	rs7819099	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	8q24.3	PLEC	rs7819099-G	0.43165	7E-11		0.014569457	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
1691	chr8	144992861	144992862	rs7819099	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	8q24.3	PLEC	rs7819099-G	0.432258	2E-39		0.029999137	[0.026-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
1691	chr8	144992861	144992862	rs7819099	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q24.3	NR	rs7819099-G	0.384131	2E-11				Affymetrix, Illumina [24332387] (imputed)	N
1691	chr8	144992861	144992862	rs7819099	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	8q24.3	NR	rs7819099-G	0.430963	2E-13		0.014428	[0.011-0.018] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1691	chr8	144992861	144992862	rs7819099	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q24.3	NR	rs7819099-A	0.563375	2E-57				Affymetrix, Illumina [17210439] (imputed)	N
1691	chr8	144992861	144992862	rs7819099	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	8q24.3	NR	rs7819099-A	0.568455	5E-60		0.03187	[0.028-0.036] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1691	chr8	144992861	144992862	rs7819099	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	8q24.3		rs7819099-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1691	chr8	144993323	144993324	rs6984820	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	8q24.3	NR	rs6984820-?		4E-8				NR [7428630] (imputed)	N
1691	chr8	144993323	144993324	rs6984820	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	8q24.3	PLEC	rs6984820-T	0.627	5E-6		0.044	NR unit increase	Illumina [NR] (imputed)	N
1691	chr8	144993376	144993377	rs6992333	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	8q24.3		rs6992333-G	0.190873	5E-10		0.0264635	[0.018-0.035] unit increase	Illumina [13478928] (imputed)	N
1691	chr8	144993376	144993377	rs6992333	34002096	Mullins N	2021-05-17	Nat Genet	Genome-wide association study of more than 40,000 bipolar disorder cases provides new insights into the underlying biology.	Bipolar disorder	41,917 European ancestry cases, 371,549 European ancestry controls	NA	8q24.3	PLEC	rs6992333-A	0.59	2E-9		0.94158	[0.92-0.96]	Affymetrix, Illumina [7549318] (imputed)	N
1691	chr8	144995493	144995494	rs6558407	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	8q24.3	PLEC	rs6558407-T	0.377	4E-6		0.045	NR unit increase	Illumina [NR] (imputed)	N
1691	chr8	144995735	144995736	rs11777402	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	8q24.3	PLEC	rs11777402-A	0.377	4E-6		0.045	NR unit increase	Illumina [NR] (imputed)	N
1691	chr8	144995963	144995964	rs35139934	34099642	de Rojas I	2021-06-07	Nat Commun	Common variants in Alzheimer's disease and risk stratification by polygenic risk scores.	Alzheimer's disease	36,675 European ancestry cases, up to 42,034 European ancestry maternal or paternal cases, up to 372,760 European ancestry controls	19,087 European ancestry cases, 39,101 European ancestry controls	8q24.3	NR	rs35139934-A	0.0858	3E-8		1.1	[1.06-1.13]	Affymetrix, Illumina [up to 14542816] (imputed)	N
1691	chr8	144996028	144996029	rs7833924	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	8q24.3		rs7833924-G	NR	4E-75		0.0374	[0.033-0.041] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1691	chr8	144996028	144996029	rs7833924	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	8q24.3	PLEC	rs7833924-G	0.430547	5E-47		0.03283632	[0.028-0.037] unit increase	Affymetrix [93095623] (imputed)	N
1691	chr8	144996028	144996029	rs7833924	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	8q24.3	PLEC	rs7833924-G	0.430554	3E-79		0.042927314	[0.038-0.047] unit increase	Affymetrix [93095623] (imputed)	N
1691	chr8	144996028	144996029	rs7833924	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q24.3	NR	rs7833924-G	0.38563	6E-114				Affymetrix, Illumina [24588908] (imputed)	N
1691	chr8	144996028	144996029	rs7833924	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	8q24.3	NR	rs7833924-G	0.429792	1E-106		0.042549	[0.039-0.046] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1691	chr8	144996028	144996029	rs7833924	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	8q24.3	PLEC, PARP10, GRINA, SPATC1	rs7833924-?		3E-8				NR [7428630] (imputed)	N
1691	chr8	144996028	144996029	rs7833924	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	8q24.3	PLEC	rs7833924-G	0.4283	7E-33		0.04389853	[0.037-0.051] unit increase	Affymetrix [~ 2500000] (imputed)	N
1691	chr8	144996407	144996408	rs11778026	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	8q24.3		rs11778026-T	0.576	5E-43				Affymetrix [10369434] (imputed)	N
1691	chr8	144996407	144996408	rs11778026	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	8q24.3	PLEC	rs11778026-T	0.623	4E-6		0.045	NR unit decrease	Illumina [NR] (imputed)	N
1691	chr8	144996597	144996598	rs11786903	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	8q24.3	PLEC	rs11786903-A	0.377	4E-6		0.045	NR unit increase	Illumina [NR] (imputed)	N
1691	chr8	144997655	144997656	rs7016416	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	8q24.3	PLEC	rs7016416-T	0.375	5E-6		0.044	NR unit increase	Illumina [NR] (imputed)	N
1691	chr8	144997926	144997927	rs7002002	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	8q24.3	PLEC	rs7002002-A	0.375	5E-6		0.044	NR unit increase	Illumina [NR] (imputed)	N
1691	chr8	144998168	144998169	rs1140522	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	8q24.3	PLEC	rs1140522-T	0.375	5E-6		0.044	NR unit increase	Illumina [NR] (imputed)	N
1691	chr8	144999620	144999621	rs55646585	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	8q24.3	PLEC	rs55646585-T	0.371	4E-6		0.045	NR unit increase	Illumina [NR] (imputed)	N
1691	chr8	144999641	144999642	rs56117011	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	8q24.3	PLEC	rs56117011-A	0.624	3E-6		0.045	NR unit decrease	Illumina [NR] (imputed)	N
1691	chr8	144999683	144999684	rs35916068	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	8q24.3	PLEC	rs35916068-A	0.624	3E-6		0.045	NR unit decrease	Illumina [NR] (imputed)	N
1691	chr8	145000320	145000321	rs6993953	34002096	Mullins N	2021-05-17	Nat Genet	Genome-wide association study of more than 40,000 bipolar disorder cases provides new insights into the underlying biology.	Bipolar I disorder	25,060 European ancestry cases, 449,978 European ancestry controls	NA	8q24.3	NR	rs6993953-C	0.618	1E-10		0.92496	[0.9-0.95]	Affymetrix, Illumina [7549318] (imputed)	N
1691	chr8	145002282	145002283	rs11993233	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	8q24.3	PLEC	rs11993233-G	0.430307	4E-103		0.049044654	[0.045-0.054] unit decrease	Affymetrix [93095623] (imputed)	N
1691	chr8	145003776	145003777	rs11136335	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	SSC-A on monocyte	2,850 Sardinian (founder/genetic isolate) ancestry individuals	NA	8q24.3		rs11136335-A	0.48523	2E-9		0.1653	[0.11-0.22] unit decrease	Illumina [17914520] (imputed)	N
1691	chr8	145003776	145003777	rs11136335	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	8q24.3	PLEC	rs11136335-G	NR	1E-6		0.0259095	[0.015-0.036] unit decrease	Illumina [13520550] (imputed)	N
1691	chr8	145005449	145005450	rs62522556	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	8q24.3	NR	rs62522556-C	0.3987	2E-11		0.001577	[0.0011-0.002] unit increase	Affymetrix [NR] (imputed)	N
1691	chr8	145005560	145005561	rs6995402	22139419	Gieger C	2011-11-30	Nature	New gene functions in megakaryopoiesis and platelet formation.	Platelet count	38,891 European ancestry individuals, 1,661 Val Borbera (founder/genetic isolate) individuals, 521 Carlantino (founder/genetic isolate) individuals, 1,198 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,213 South Tyrolean (founder/genetic isolate) individuals, 890 Sorbian (founder/genetic isolate) individuals, 4,292 Sardinian (founder/genetic isolate) individuals	Up to 16,949 European ancestry individuals, 854 Cliento (founder/genetic isolate) individuals, 1,035 Talana (founder/genetic isolate) individuals	8q24.3	PLEC1	rs6995402-C	NR	5E-10		2.304	[1.58-3.03] 10^9/l increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1691	chr8	145007186	145007187	rs11136336	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	8q24.3	NR	rs11136336-?	NR	8E-7	(female)	0.12116	[0.073-0.169] unit decrease	Affymetrix [7794483] (imputed)	N
1691	chr8	145007186	145007187	rs11136336	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	8q24.3	NR	rs11136336-?	NR	1E-7		0.11946	[0.075-0.164] unit decrease	Affymetrix [7794483] (imputed)	N
1691	chr8	145007533	145007534	rs7003580	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	8q24.3		rs7003580-T	NR	1E-10		0.015	[0.01-0.02] unit increase	Affymetrix, Illumina [20528270] (imputed)	N
1691	chr8	145007533	145007534	rs7003580	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Anti-saccade response	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	8q24.3	PLEC	rs7003580-C	0.4097	4E-6	(African)			Illumina [4404269] (imputed)	N
1691	chr8	145008442	145008443	rs11783772	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	8q24.3	PLEC	rs11783772-?	NR	2E-8		0.0203215	[0.013-0.027] unit decrease	Illumina [27896057] (imputed)	N
1691	chr8	145008442	145008443	rs11783772	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	8q24.3		rs11783772-?	NR	8E-52				NR [~ 8900000] (imputed)	N
1691	chr8	145013314	145013315	rs11784501	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	8q24.3		rs11784501-T	NR	4E-36		0.0181	[0.015-0.021] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1691	chr8	145013774	145013775	rs11784619	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Left ventricular global radial strain (MTAG)	19,260 European ancestry individuals	NA	8q24.3	PLEC	rs11784619-G	0.9417	6E-8		0.9143	[0.58-1.24] unit decrease	Affymetrix [~ 9500000] (imputed)	N
1691	chr8	145013774	145013775	rs11784619	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Left ventricular ejection fraction (MTAG)	19,260 European ancestry individuals	NA	8q24.3	PLEC	rs11784619-G	0.9417	4E-7		0.6177	[0.38-0.86] unit decrease	Affymetrix [~ 9500000] (imputed)	N
1691	chr8	145013774	145013775	rs11784619	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q24.3	PLEC	rs11784619-G	0.946223	5E-8	(-8 ms)	0.0664696	[0.042-0.091] unit increase	Affymetrix [10000000] (imputed)	N
1691	chr8	145013774	145013775	rs11784619	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	8q24.3	PLEC	rs11784619-G	0.946223	3E-8	(-10 ms)	0.0678751	[0.043-0.092] unit increase	Affymetrix [10000000] (imputed)	N
1691	chr8	145018353	145018354	rs11786896	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Creatinine levels	110,051 European ancestry individuals	NA	8q24.3		rs11786896-C	0.949812	2E-8		0.0457746	[0.03-0.062] unit decrease	NR [11722792] (imputed)	N
1691	chr8	145018353	145018354	rs11786896	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	8q24.3		rs11786896-T	NR	6E-20		0.041	[0.032-0.05] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
1691	chr8	145018353	145018354	rs11786896	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	8q24.3	PLEC	rs11786896-T	0.0491	3E-11		1.0946	[0.77-1.42] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1691	chr8	145021166	145021167	rs7464572	28107422	de Vries PS	2017-01-20	PLoS One	Comparison of HapMap and 1000 Genomes Reference Panels in a Large-Scale Genome-Wide Association Study.	Fibrinogen levels	91,953 European ancestry individuals (imputed to HapMap)		8q24.3	PLEC	rs7464572-?	NR	2E-9		0.0066	unit increase	Affymetrix, Illumina [2749429] (imputed)	N
1691	chr8	145021166	145021167	rs7464572	23969696	Sabater-Lleal M	2013-08-22	Circulation	Multiethnic meta-analysis of genome-wide association studies in >100 000 subjects identifies 23 fibrinogen-associated Loci but no strong evidence of a causal association between circulating fibrinogen and cardiovascular disease.	Fibrinogen	91,323 European ancestry individuals	8,423 African American individuals, 1,447 Hispanic individuals	8q24.3	PLEC1	rs7464572-C	0.6	1E-9	(EA)	0.007	[0.005-0.009] unit decrease	Affymetrix, Illumina [2515567] (imputed)	N
1691	chr8	145022656	145022657	rs7832643	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Total cholesterol levels	32,576 East Asian ancestry individuals, 187,365 European ancestry individuals	10,855 Chinese ancestry individuals	8q24.3	PLEC1	rs7832643-T	0.405	3E-14	(Trans-ethnic initial)	0.0289	[0.022-0.036] unit increase (EA Beta values)	Affymetrix, Illumina [up to 1900000] (imputed)	N
1691	chr8	145022656	145022657	rs7832643	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	LDL cholesterol levels	32,285 East Asian ancestry individuals, 173,082 European ancestry individuals	8,478 Chinese ancestry individuals	8q24.3	PLEC1	rs7832643-T	0.405	2E-17	(Trans-ethnic initial)	0.0339	[0.026-0.041] unit increase (EA Beta value)	Affymetrix, Illumina [~ 1900000] (imputed)	N
1691	chr8	145022876	145022877	rs7818941	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls, 33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	8q24.3		rs7818941-T	NR	9E-10		0.0352	[0.024-0.046] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1691	chr8	145025297	145025298	rs73715570	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	8q24.3		rs73715570-?	NR	6E-8				NR [~ 8900000] (imputed)	N
1691	chr8	145028586	145028587	rs58579887	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	8q24.3		rs58579887-C	NR	8E-13		0.0159	[0.012-0.02] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
1691	chr8	145028586	145028587	rs58579887	33888516	Zheng T	2021-04-22	Gut	Genome-wide analysis of 944 133 individuals provides insights into the etiology of haemorrhoidal disease.	Haemorrhoidal disease	218,920 European ancestry cases, 725,213 European ancestry controls	NA	8q24.3	PLEC	rs58579887-?	0.40459999999999996	2E-11		1.03	[1.02-1.04]	Affymetrix, Illumina [8494288] (imputed)	N
1691	chr8	145030112	145030113	rs545275919	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	8q24.3	NR	rs545275919-?		4E-8	(Genu of corpus callosum)			NR [8955960] (imputed)	N
1691	chr8	145030900	145030901	rs11329885	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	8q24.3		rs11329885-T	NR	1E-11		0.0157	[0.011-0.02] unit increase	Affymetrix, Illumina [20521447] (imputed)	N
1691	chr8	145031264	145031265	rs11777239	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	8q24.3	NR	rs11777239-?		6E-9	(Body of corpus callosum)			NR [8955960] (imputed)	N
1691	chr8	145031967	145031968	rs55831924	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	8q24.3	PLEC	rs55831924-C	0.638654	5E-17		0.0182534	[0.014-0.023] unit decrease	Affymetrix [NR] (imputed)	N
1691	chr8	145031967	145031968	rs55831924	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	8q24.3	NR	rs55831924-T	0.36074300000000004	4E-15		0.00671396	[0.005-0.0084] unit increase	Affymetrix [16582909] (imputed)	N
1691	chr8	145031967	145031968	rs55831924	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	8q24.3	NR	rs55831924-T	0.36074300000000004	2E-11		0.0063198	[0.0044-0.0082] unit increase	Affymetrix [16582965] (imputed)	N
1691	chr8	145031967	145031968	rs55831924	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	8q24.3	PLEC	rs55831924-T	0.3341	2E-8		0.0166	[0.011-0.022] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1691	chr8	145031967	145031968	rs55831924	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	8q24.3	PLEC	rs55831924-T	0.3341	6E-10		0.0182	[0.013-0.024] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1691	chr8	145034851	145034852	rs11780978	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	8q24.3	NR	rs11780978-A	0.403073	3E-13		0.00875809	[0.0063-0.0112] unit increase	Affymetrix [16585854] (imputed)	N
1691	chr8	145034851	145034852	rs11780978	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	8q24.3	NR	rs11780978-A	0.403073	9E-8		0.00778954	[0.0049-0.0106] unit increase	Affymetrix [16585866] (imputed)	N
1691	chr8	145034851	145034852	rs11780978	30374069	Styrkarsdottir U	2018-10-29	Nat Genet	Meta-analysis of Icelandic and UK data sets identifies missense variants in SMO, IL11, COL11A1 and 13 more new loci associated with osteoarthritis.	Osteoarthritis (hip)	17,151 European ancestry cases, 596,639 European ancestry controls	NA	8q24.3	NR	rs11780978-A	0.4	7E-6		1.05646	[NR]	Affymetrix, Illumina [11554240] (imputed)	N
1691	chr8	145034851	145034852	rs11780978	29559693	Zengini E	2018-03-20	Nat Genet	Genome-wide analyses using UK Biobank data provide insights into the genetic architecture of osteoarthritis.	Osteoarthritis of the hip (hospital diagnosed)	2,396 European ancestry cases, 9,593 European ancestry controls	5,714 Icelandic ancestry cases, 199,421 Icelandic ancestry controls	8q24.3	NR	rs11780978-A	0.40168	2E-9		1.1263	[1.0834-1.1708]	Affymetrix [16122076] (imputed)	N
1691	chr8	145034851	145034852	rs11780978	26561523	de Vries PS	2015-11-10	Hum Mol Genet	A meta-analysis of 120 246 individuals identifies 18 new loci for fibrinogen concentration.	Fibrinogen levels	120,246 European ancestry individuals	NA	8q24.3	PLEC	rs11780978-A	0.4	6E-10		0.0059	NR unit increase	Affymetrix, Illumina [~ 10700000] (imputed)	N
1691	chr8	145037572	145037573	rs11783655	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q24.3	NR	rs11783655-T	0.607	7E-7	(EA)	0.027	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1691	chr8	145037572	145037573	rs11783655	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	8q24.3	PLEC1	rs11783655-A	0.395	1E-9		0.018	[0.012-0.024] unit decrease	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
1691	chr8	145040855	145040856	rs11781667	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	8q24.3		rs11781667-T	NR	1E-9		0.0147	[0.01-0.0194] unit increase	Affymetrix, Illumina [20536134] (imputed)	N
1691	chr8	145040855	145040856	rs11781667	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	8q24.3	PLEC	rs11781667-?	NR	4E-18		0.0231	[0.018-0.028] unit increase	Affymetrix [5701386] (imputed)	N
1691	chr8	145041332	145041333	rs11787365	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls	NA	8q24.3	PLEC	rs11787365-C	0.400918	1E-10		0.037016407	[0.026-0.048] unit increase	Affymetrix [7288503] (imputed)	N
1691	chr8	145043542	145043543	rs11136341	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q24.3	NR	rs11136341-A	NR	9E-8		0.026	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1691	chr8	145043542	145043543	rs11136341	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q24.3	NR	rs11136341-A	0.622	5E-7	(EA)	0.027	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1691	chr8	145043542	145043543	rs11136341	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q24.3	NR	rs11136341-A	NR	1E-9		0.03	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1691	chr8	145043542	145043543	rs11136341	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q24.3	NR	rs11136341-A	0.622	4E-8	(EA)	0.03	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1691	chr8	145043542	145043543	rs11136341	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	8q24.3	PLEC1	rs11136341-G	0.4	7E-12		0.045	[NR] unit increase	NR [NR] (imputed)	N
1691	chr8	145043542	145043543	rs11136341	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	8q24.3	PLEC1	rs11136341-G	0.40	6E-9		0.038	[NR] unit increase	NR [NR] (imputed)	N
1691	chr8	145043542	145043543	rs11136341	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	LDL cholesterol	95,454 European ancestry individuals	NA	8q24.3	PLEC1	rs11136341-G	0.4	4E-13		1.4	[0.99-1.81] mg/dL increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1691	chr8	145043542	145043543	rs11136341	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	Cholesterol, total	100,184 European ancestry individuals	NA	8q24.3	PLEC1	rs11136341-G	0.4	9E-10		1.34	[0.87-1.81] mg/dL increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1691	chr8	145044103	145044104	rs11787335	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	8q24.3		rs11787335-C	0.641	7E-18				Affymetrix [10369434] (imputed)	N
1691	chr8	145050335	145050336	rs7013938	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	8q24.3	PLEC	rs7013938-C	NR	2E-9		0.0178789	[0.012-0.024] unit increase	Affymetrix [321788] (imputed)	N
1691	chr8	145050357	145050358	rs11786083	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	8q24.3	PLEC	rs11786083-G	0.625589	7E-13		0.0155482	[0.011-0.02] unit decrease	Affymetrix [NR] (imputed)	N
1691	chr8	145051413	145051414	rs1134027	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	8q24.3	NR	rs1134027-G	0.630063	2E-34		0.0243881	[0.02-0.028] unit decrease	Affymetrix [15000001]	N
1691	chr8	145054270	145054271	rs62530285	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	8q24.3	NR	rs62530285-?		2E-8	(Genu of corpus callosum)			NR [8955960] (imputed)	N
1691	chr8	145057867	145057868	rs11544989	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	8q24.3	PARP10	rs11544989-A	NR	3E-9		0.0176012	[0.012-0.023] unit decrease	Affymetrix [321788] (imputed)	N
1691	chr8	145057867	145057868	rs11544989	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8dim Natural Killer T %lymphocyte	3,668 Sardinian (founder/genetic isolate) ancestry individuals	NA	8q24.3		rs11544989-G	0.61406	3E-8		0.1407	[0.091-0.19] unit increase	Illumina [18430788] (imputed)	N
1691	chr8	145057867	145057868	rs11544989	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8dim Natural Killer T %T cell	3,668 Sardinian (founder/genetic isolate) ancestry individuals	NA	8q24.3		rs11544989-G	0.61406	4E-8		0.1399	[0.09-0.19] unit increase	Illumina [18430788] (imputed)	N
1691	chr8	145058985	145058986	rs11136343	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	8q24.3	NR	rs11136343-G	NR	7E-20		0.0223	[0.018-0.027] unit increase	Affymetrix [9000000] (imputed)	N
1691	chr8	145058985	145058986	rs11136343	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	8q24.3	NR	rs11136343-G	NR	3E-12		0.0177	[0.013-0.023] unit increase	Affymetrix [9000000] (imputed)	N
1691	chr8	145058985	145058986	rs11136343	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	8q24.3	NR	rs11136343-G	NR	8E-22		0.0234	[0.019-0.028] unit increase	Affymetrix [9000000] (imputed)	N
1691	chr8	145058985	145058986	rs11136343	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	8q24.3	NR	rs11136343-G	NR	2E-23		0.0243	[0.02-0.029] unit increase	Affymetrix [9000000] (imputed)	N
1691	chr8	145059424	145059425	rs11136344	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q24.3	NR	rs11136344-C	0.388482	2E-34				Affymetrix, Illumina [24246363] (imputed)	N
1691	chr8	145059424	145059425	rs11136344	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	8q24.3	NR	rs11136344-?		1E-8	(Body of corpus callosum)			NR [8955960] (imputed)	N
1691	chr8	145061623	145061624	rs3936211	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	8q24.3		rs3936211-T	0.177222	5E-8		0.0258401	[0.017-0.035] unit increase	Illumina [13476266] (imputed)	N
1691	chr8	145063411	145063412	rs11784833	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	8q24.3	PARP10	rs11784833-C	0.382808	1E-22		0.022281518	[0.018-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1691	chr8	145063411	145063412	rs11784833	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	8q24.3	PARP10	rs11784833-C	0.382795	4E-13		0.016731964	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1691	chr8	145063411	145063412	rs11784833	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	8q24.3		rs11784833-?	NR	1E-26				NR [~ 8900000] (imputed)	N
1691	chr8	145063411	145063412	rs11784833	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q24.3	NR	rs11784833-T	NR	4E-6		0.022	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1691	chr8	145063411	145063412	rs11784833	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q24.3	NR	rs11784833-T	NR	2E-8		0.027	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1691	chr8	145063411	145063412	rs11784833	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	8q24.3	NR	rs11784833-T	0.634	2E-6	(EA)	0.025	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1691	chr8	145063411	145063412	rs11784833	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	8q24.3	NR	rs11784833-C	NR	7E-9		0.0231467	[0.015-0.031] unit decrease	Affymetrix [16832071] (imputed)	N
1691	chr8	145063411	145063412	rs11784833	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	LDL cholesterol	up 62,166 European ancestry individuals	NA	8q24.3	GRINA, PLEC1	rs11784833-C	0.36	2E-10		0.042	[0.028-0.056] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
1691	chr8	145066852	145066853	rs56261297	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular volume	108,256 Japanese ancestry individuals	NA	8q24.3	GRINA	rs56261297-?	NR	1E-8		0.03373	[0.022-0.045] unit increase novel	Illumina [6108953] (imputed)	N
1691	chr8	145073820	145073821	rs11291116	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	8q24.3	PARP10	rs11291116-C	0.369364	2E-15		0.0206043	[0.016-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1691	chr8	145076528	145076529	rs57957974	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	8q24.3	PLEC, MIR661, PARP10, GRINA, SPATC1, OPLAH, EXOSC4, GPAA1	rs57957974-A	0.351	1E-6		1.05919	[1.04-1.08]	NR [9372253] (imputed)	N
1691	chr8	145076528	145076529	rs57957974	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar I disorder	14,879 European ancestry cases, 31,358 European ancestry controls	NA	8q24.3	PLEC, MIR661, PARP10, GRINA, SPATC1, OPLAH, EXOSC4, GPAA1	rs57957974-A	0.351	2E-8		1.09582		NR [9372253] (imputed)	N
1691	chr8	145081247	145081248	rs6420181	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin	108,054 Japanese ancestry individuals	NA	8q24.3	GRINA, SPATC1	rs6420181-?	NR	2E-9		0.0336	[0.023-0.045] unit increase novel	Illumina [6108953] (imputed)	N
1691	chr8	145084492	145084493	rs11136252	28107422	de Vries PS	2017-01-20	PLoS One	Comparison of HapMap and 1000 Genomes Reference Panels in a Large-Scale Genome-Wide Association Study.	Fibrinogen levels	91,953 European ancestry individuals (imputed to 1000 Genomes)		8q24.3	GRINA, SPATC1	rs11136252-?	NR	5E-8		0.0056	unit increase	Affymetrix, Illumina [10883314] (imputed)	N
1691	chr8	145086427	145086428	rs6985603	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	8q24.3	NR	rs6985603-?	NR	2E-6		0.0398	[0.023-0.056] unit increase	Illumina [at least 560000] (imputed)	N
1692	chr8	145097719	145097720	rs79832570	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	8q24.3		rs79832570-T	0.918	6E-10				Affymetrix [10369434] (imputed)	N
1692	chr8	145097719	145097720	rs79832570	34099642	de Rojas I	2021-06-07	Nat Commun	Common variants in Alzheimer's disease and risk stratification by polygenic risk scores.	Alzheimer's disease	36,675 European ancestry cases, up to 42,034 European ancestry maternal or paternal cases, up to 372,760 European ancestry controls	19,087 European ancestry cases, 39,101 European ancestry controls	8q24.3	NR	rs79832570-C	0.097	4E-13		1.13	[1.09-1.16]	Affymetrix, Illumina [up to 14542816] (imputed)	N
1692	chr8	145097719	145097720	rs79832570	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	8q24.3	NR	rs79832570-C	NR	4E-9		0.0271	[0.018-0.036] unit increase	Affymetrix [9000000] (imputed)	N
1692	chr8	145108150	145108151	rs61732533	34493870	Wightman DP	2021-09-07	Nat Genet	A genome-wide association study with 1,126,563 individuals identifies new risk loci for Alzheimer's disease.	Late-onset Alzheimer's disease	90,338 cases, 1,036,225 controls	NA	8q24.3		rs61732533-?	NR	3E-9				Illumina [NR] (imputed)	N
1692	chr8	145108150	145108151	rs61732533	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	8q24.3		rs61732533-A	0.0484	2E-10		0.21020213	[0.14-0.28] mmHg decrease	Affymetrix, Illumina [242866] (imputed)	N
1692	chr8	145111528	145111529	rs11993554	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	8q24.3	OPLAH	rs11993554-A	0.887979	6E-58	(6-oxopiperidine-2-carboxylate)	0.587	[0.51-0.66] unit decrease	Illumina [13039987] (imputed)	N
1692	chr8	145113240	145113241	rs3935209	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	8q24.3	OPLAH	rs3935209-T	0.857127	4E-100	(5-oxoproline)	0.719	[0.65-0.79] unit increase	Illumina [13039987] (imputed)	N
1692	chr8	145115464	145115465	rs144843136	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	8q24.3	OPLAH	rs144843136-T	0.077328	1E-31		0.048371084	[0.04-0.056] unit increase	Affymetrix [93095623] (imputed)	N
1692	chr8	145119167	145119168	rs59095288	33838163	Luo S	2021-04-07	Kidney Int	Genome-wide association study of serum metabolites in the African American Study of Kidney Disease and Hypertension.	Serum metabolite concentrations in chronic kidney disease	619 African American individuals	NA	8q24.3	OPLAH, CTD-3065J16.9, EXOSC4, GPAA1, KIAA1875, MAF1	rs59095288-?	NR	2E-22	(6-oxopiperidine-2-carboxylate)	0.62	[NR] unit increase	Illumina [14760605] (imputed)	N
1692	chr8	145124612	145124613	rs60394484	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	8q24.3	NR	rs60394484-A	NR	5E-14		0.0416	[0.031-0.052] unit decrease	Affymetrix [9000000] (imputed)	N
1692	chr8	145124612	145124613	rs60394484	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	8q24.3	NR	rs60394484-A	NR	2E-14		0.0424	[0.032-0.053] unit increase	Affymetrix [9000000] (imputed)	N
1692	chr8	145132388	145132389	rs76234559	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	8q24.3		rs76234559-G	NR	3E-25		0.0434	[0.035-0.052] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
1692	chr8	145132388	145132389	rs76234559	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	8q24.3		rs76234559-?	NR	2E-31				NR [~ 8900000] (imputed)	N
1692	chr8	145139521	145139522	rs6558295	23093944	Krumsiek J	2012-10-18	PLoS Genet	Mining the unknown: a systems approach to metabolite identification combining genetic and metabolic information.	Serum metabolite levels	1,678 European ancestry individuals	NA	8q24.3	GPAA1, HEATR7A, OPLAH, SHARPIN	rs6558295-?	NR	8E-51	(5oxoproline)	0.0611	[NR] unit decrease	Affymetrix [655658]	N
1692	chr8	145139521	145139522	rs6558295	21886157	Suhre K	2011-08-31	Nature	Human metabolic individuality in biomedical and pharmaceutical research.	Metabolic traits	2,820 European ancestry individuals	NA	8q24.3	OPLAH	rs6558295-G	0.083	2E-59	(5-oxoproline)	0.121	[NR] unit decrease	Affymetrix, Illumina [534665]	N
1692	chr8	145145686	145145687	rs7822232	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	8q24.3	OPLAH	rs7822232-A	0.92	5E-15	(X-14625)	0.03	[0.022-0.038] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
1692	chr8	145149822	145149823	rs13256214	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q24.3	NR	rs13256214-T	0.924771	2E-30				Affymetrix, Illumina [20825802] (imputed)	N
1692	chr8	145149859	145149860	rs6984764	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	8q24.3	CYC1	rs6984764-G	0.9139774	8E-21		0.0456452	[0.038-0.053] unit decrease	Affymetrix [93095623] (imputed)	N
1692	chr8	145149859	145149860	rs6984764	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	8q24.3	CYC1	rs6984764-G	0.9139609	3E-20		0.036953587	[0.029-0.045] unit decrease	Affymetrix [93095623] (imputed)	N
1692	chr8	145154281	145154282	rs77359862	34785643	Park JY	2021-11-16	Transl Psychiatry	A missense variant in SHARPIN mediates Alzheimer's disease-specific brain damages.	Hippocampal volume	2,643 Korean ancestry individuals	NA	8q24.3		rs77359862-A	0.02	5E-11		0.6	[0.42-0.78] unit decrease	NR [3930740] (imputed)	N
1692	chr8	145154281	145154282	rs77359862	34785643	Park JY	2021-11-16	Transl Psychiatry	A missense variant in SHARPIN mediates Alzheimer's disease-specific brain damages.	Entorhinal cortical thickness	2,643 Korean ancestry individuals	NA	8q24.3		rs77359862-A	0.02	2E-8		0.58	[0.38-0.78] unit decrease	NR [3930740] (imputed)	N
1692	chr8	145155407	145155408	rs12550729	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	8q24.3	OPLAH	rs12550729-T	0.92	6E-110	(5-oxoproline)	0.064	[0.058-0.07] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
1692	chr8	145158606	145158607	rs34173062	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	8q24.3		rs34173062-A	NR	5E-23		0.0357	[0.029-0.043] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
1692	chr8	145158606	145158607	rs34173062	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	8q24.3	SHARPIN	rs34173062-A	0.072144	5E-37		0.057548758	[0.049-0.066] unit increase	Affymetrix [93095623] (imputed)	N
1692	chr8	145158606	145158607	rs34173062	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	8q24.3	SHARPIN	rs34173062-A	0.072164	9E-32		0.05310719	[0.044-0.062] unit increase	Affymetrix [93095623] (imputed)	N
1692	chr8	145158606	145158607	rs34173062	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q24.3	NR	rs34173062-A	0.0713626	5E-37				Affymetrix, Illumina [19872809] (imputed)	N
1692	chr8	145158606	145158607	rs34173062	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	8q24.3	NR	rs34173062-A	0.072995	2E-40		0.054559	[0.047-0.063] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
1692	chr8	145158606	145158607	rs34173062	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	8q24.3	MAF1, SHARPIN	rs34173062-A	0.07	6E-10				NR [> 9500000] (imputed)	N
1692	chr8	145158606	145158607	rs34173062	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	8q24.3	MAF1/SHARPIN	rs34173062-A	0.07002600000000003	1E-12		1.0924679	[1.066110188906-1.11947734381179]	NR [9572556] (imputed)	N
1692	chr8	145158606	145158607	rs34173062	31959851	Olafsdottir TA	2020-01-20	Nat Commun	Eighty-eight variants highlight the role of T cell regulation and airway remodeling in asthma pathogenesis.	Asthma	16,247 European ancestry cases, 346,486 European ancestry controls, 52,942 cases, 355,713 controls	NA	8q24.3	SHARPIN, MAF1, WDR97, CYC1, GPAA1, EXOSC4	rs34173062-A	0.07169	1E-8		1.07539	[1.05-1.10]	Affymetrix [32463443] (imputed)	N
1692	chr8	145158606	145158607	rs34173062	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Respiratory diseases	approximately 459,000 European ancestry individuals	NA	8q24.3		rs34173062-?	NR	6E-10				NR [~ 8900000] (imputed)	N
1692	chr8	145158606	145158607	rs34173062	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	8q24.3		rs34173062-?	NR	1E-36				NR [~ 8900000] (imputed)	N
1692	chr8	145158606	145158607	rs34173062	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	8q24.3	SHARPIN	rs34173062-A	0.0749	6E-15		0.05751766	[0.043-0.072] unit increase	Affymetrix [~ 2500000] (imputed)	N
1692	chr8	145158606	145158607	rs34173062	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	8q24.3	SHARPIN	rs34173062-A	0.0748	2E-15		0.05862283	[0.044-0.073] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1692	chr8	145158606	145158607	rs34173062	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	8q24.3	SHARPIN	rs34173062-A	0.0749	6E-16		0.05961465	[0.045-0.074] unit increase	Affymetrix [~ 2500000] (imputed)	N
1692	chr8	145158606	145158607	rs34173062	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	8q24.3	SHARPIN	rs34173062-A	0.0748	5E-16		0.0599948	[0.046-0.074] unit increase	Affymetrix [~ 2500000] (imputed)	N
1692	chr8	145158606	145158607	rs34173062	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	8q24.3	SHARPIN	rs34173062-A	0.0749	9E-16		0.05925318	[0.045-0.074] unit increase	Affymetrix [~ 2500000] (imputed)	N
1692	chr8	145159707	145159708	rs540931816	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	8q24.3	NR	rs540931816-D	0.913952	2E-37		0.045193	[0.038-0.052] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1692	chr8	145159707	145159708	rs540931816	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	8q24.3	NR	rs540931816-D	0.913941	3E-33		0.042949	[0.036-0.05] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
1692	chr8	145179253	145179254	rs114634117	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	8q24.3		rs114634117-A	NR	9E-24		0.0427	[0.034-0.051] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
1692	chr8	145179253	145179254	rs114634117	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	8q24.3	NR	rs114634117-?	NR	4E-10				Affymetrix [~ 8270000] (imputed)	N
1692	chr8	145180545	145180546	rs112085143	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	8q24.3	KIAA1875	rs112085143-T	NR	1E-8		0.0295154	[0.019-0.04] unit decrease	Affymetrix [321114] (imputed)	N
1692	chr8	145181016	145181017	rs73381355	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	8q24.3	intergenic	rs73381355-T	0.0807	1E-10		0.04282849	[0.03-0.056] unit increase	Affymetrix [~ 2500000] (imputed)	N
1692	chr8	145181016	145181017	rs73381355	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	8q24.3	intergenic	rs73381355-T	0.0808	2E-10		0.04238021	[0.029-0.055] unit increase	Affymetrix [~ 2500000] (imputed)	N
1692	chr8	145220413	145220414	rs118016928	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	8q24.3	NR	rs118016928-T	NR	1E-15		0.0709	[0.053-0.088] unit increase	Affymetrix [9000000] (imputed)	N
1692	chr8	145222784	145222785	rs113658888	34993496	Jiang Y	2021-11-19	HGG Adv	Genetic Factors Associated with Prostate Cancer Conversion from Active Surveillance to Treatment.	Conversion from active surveillance to active treatment in prostate cancer	1,609 European ancestry cases, 3,613 European ancestry controls	77 European ancestry cases, 348 European ancestry controls, 123 African ancestry cases, 273 African ancestry controls, 88 Asian ancestry cases, 149 Asian ancestry controls, 21 Latin American cases, 60 Latin American controls	8q24.3		rs113658888-T	0.011	9E-8		2.11	[1.6-2.77]	Illumina [9962324] (imputed)	N
1692	chr8	145226776	145226777	rs72695449	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	8q24.3	NR	rs72695449-A	NR	2E-13		0.0563	[0.041-0.071] unit increase	Affymetrix [9000000] (imputed)	N
1693	chr8	145245630	145245631	rs6558318	23093944	Krumsiek J	2012-10-18	PLoS Genet	Mining the unknown: a systems approach to metabolite identification combining genetic and metabolic information.	Serum metabolite levels	1,678 European ancestry individuals	NA	8q24.3	HEATR7A	rs6558318-?	NR	2E-15	(5oxoproline)	0.05344	[NR] unit decrease	Affymetrix [655658]	N
1693	chr8	145247167	145247168	rs6988451	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PRDX3	5,364 Icelandic ancestry individuals	NA	8q24.3		rs6988451-A	0.431	3E-16		0.148875	[0.11-0.18] unit decrease	Illumina [7506463] (imputed)	N
1693	chr8	145247167	145247168	rs6988451	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	8q24.3	MROH1	rs6988451-A	NR	3E-9		0.0186371	[0.012-0.025] unit decrease	Affymetrix [321114] (imputed)	N
1693	chr8	145247167	145247168	rs6988451	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	8q24.3	NR	rs6988451-?	NR	2E-11				Affymetrix [~ 8270000] (imputed)	N
1693	chr8	145252483	145252484	rs77501143	34099642	de Rojas I	2021-06-07	Nat Commun	Common variants in Alzheimer's disease and risk stratification by polygenic risk scores.	Alzheimer's disease	36,675 European ancestry cases, up to 42,034 European ancestry maternal or paternal cases, up to 372,760 European ancestry controls	19,087 European ancestry cases, 39,101 European ancestry controls	8q24.3	NR	rs77501143-T	0.068	2E-6		1.11	[1.06-1.16]	Affymetrix, Illumina [up to 14542816] (imputed)	N
1693	chr8	145284796	145284797	rs117123242	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	8q24.3		rs117123242-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1695	chr8	145501822	145501823	rs186474010	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA		intergenic	rs186474010-A	0.8088	1E-9		0.016	[0.011-0.021] unit decrease	Affymetrix [18391927] (imputed)	N
1695	chr8	145504342	145504343	rs7838717	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	8q24.3	BOP1	rs7838717-T	0.3631	6E-21		0.0234	[0.018-0.028] unit decrease	Affymetrix [19819130] (imputed)	N
1695	chr8	145504342	145504343	rs7838717	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	8q24.3	BOP1	rs7838717-T	0.3631	2E-18		0.0217	[0.017-0.027] unit decrease	Affymetrix [19819130] (imputed)	N
1695	chr8	145504342	145504343	rs7838717	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	8q24.3		rs7838717-?	NR	7E-23				NR [~ 8900000] (imputed)	N
1695	chr8	145504342	145504343	rs7838717	28886342	Ng M	2017-09-07	Am J Hum Genet	A Genome-wide Association Study of Dupuytren Disease Reveals 17 Additional Variants Implicated in Fibrosis.	Dupuytren's disease	3,871 European ancestry cases, 4,686 European ancestry controls	4,041 European and unknown ancestry cases, 8,251 European and unknown ancestry controls	8q24.3	BOP1, HSF1, DGAT1	rs7838717-T	0.405	5E-14		1.182	[1.131-1.234]	Illumina [238825]	N
1695	chr8	145507303	145507304	rs4977213	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	8q24.3	BOP1	rs4977213-C	0.3749	9E-14		1.05	[1.04-1.07]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1695	chr8	145510506	145510507	rs4977200	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	8q24.3	NR	rs4977200-G	NR	4E-9		0.0152	[0.01-0.02] unit decrease	Affymetrix [9000000] (imputed)	N
1695	chr8	145525276	145525277	rs13268508	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	8q24.3	NR	rs13268508-C	0.6277	4E-20		0.0376	[0.03-0.046] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1695	chr8	145536055	145536056	rs62530366	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	8q24.3		rs62530366-?	NR	7E-8				NR [~ 8900000] (imputed)	N
1695	chr8	145536055	145536056	rs62530366	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	8q24.3		rs62530366-?	NR	8E-10		0.01309	[0.0089-0.0173] unit decrease	Affymetrix [20259828] (imputed)	N
1695	chr8	145536055	145536056	rs62530366	28566273	Scott RA	2017-05-31	Diabetes	An Expanded Genome-Wide Association Study of Type 2 Diabetes in Europeans.	Type 2 diabetes	up to 26,676 European ancestry cases, up to 132,532 European ancestry controls	up to 12,543 European ancestry cases, up to 66,458 European ancestry controls	8q24.3	NR	rs62530366-G	0.38	9E-6		1.05	[1.03-1.07]	Affymetrix, Illumina [at least 11579618] (imputed)	N
1695	chr8	145541765	145541766	rs55962377	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	8q24.3		rs55962377-?	NR	8E-9				NR [~ 8900000] (imputed)	N
1695	chr8	145545545	145545546	rs3757974	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	8q24.3		rs3757974-G	NR	2E-12		0.0148	[0.011-0.019] unit increase	Affymetrix, Illumina [20535873] (imputed)	N
1695	chr8	145545919	145545920	rs3757972	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	8q24.3		rs3757972-T	NR	8E-18		0.0182	[0.014-0.022] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
1695	chr8	145545919	145545920	rs3757972	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	8q24.3	NR	rs3757972-T	NR	2E-9		0.0148	[0.0099-0.0197] unit decrease	Affymetrix [9000000] (imputed)	N
1695	chr8	145545919	145545920	rs3757972	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	8q24.3	NR	rs3757972-T	NR	3E-16		0.0206	[0.016-0.026] unit increase	Affymetrix [9000000] (imputed)	N
1695	chr8	145546035	145546036	rs3757970	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	200,622 European ancestry individuals	NA	8q24.3	DGAT1	rs3757970-A	0.6263	5E-7		0.0111	[0.0072-0.015] unit decrease	Affymetrix, Illumina [34064007] (imputed)	N
1695	chr8	145551198	145551199	rs3757969	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	8q24.3	NR	rs3757969-G	0.3757	4E-22		0.0481	[0.038-0.058] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1695	chr8	145559745	145559746	rs200494214	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	8q24.3	NR	rs200494214-T	NR	1E-11		0.2686	[0.19-0.35] unit increase	Affymetrix [9000000] (imputed)	N
1695	chr8	145584693	145584694	rs34383175	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interferon gamma-induced protein 10 levels	3,685 Finnish ancestry individuals	NA	8q24.3	NR	rs34383175-C		2E-6		0.3153	[0.19-0.44] SD units increase	NR [10700000] (imputed)	N
1695	chr8	145604658	145604659	rs376775068	27992416	Lane JM	2016-12-19	Nat Genet	Genome-wide association analyses of sleep disturbance traits identify new loci and highlight shared genetics with neuropsychiatric and metabolic traits.	Insomnia	up to 12,674 European ancestry male cases, up to 19,481 European ancestry female cases, up to 16,009 European ancestry male controls, up to 10,964 European ancestry female controls,	NA	8q24.3	ADCK5	rs376775068-G	NR	7E-8		1.11	[1.16-1.06]	Affymetrix [up to 73355677] (imputed)	N
1696	chr8	145639585	145639586	rs1871535	28701861	Randall CL	2017-06-15	Pain Res Manag	A Preliminary Genome-Wide Association Study of Pain-Related Fear: Implications for Orofacial Pain.	Fear of minor pain	Up to 1,367 European ancestry individuals, up to 159 African American individuals, up to 13 Hispanic individuals, up to 23 Asian, Native American and other ancestry individuals, up to 21 individuals	NA	8q24.3	NR	rs1871535-C	0.02	3E-7		2.09	unit decrease	Illumina [8591557] (imputed)	N
1696	chr8	145639653	145639654	rs75920625	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	8q24.3	NR	rs75920625-C	NR	3E-11		0.1171	[0.083-0.152] unit increase	Affymetrix [9000000] (imputed)	N
1696	chr8	145639725	145639726	rs2272662	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Histidine levels	114,897 European ancestry individuals	NA	8q24.3		rs2272662-T	0.423375	2E-12		0.0295286	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
1696	chr8	145639725	145639726	rs2272662	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	8q24.3		rs2272662-C	NR	1E-50		0.0353	[0.031-0.04] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
1696	chr8	145639725	145639726	rs2272662	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	8q24.3	SLC39A4	rs2272662-T	0.422533	6E-70		0.00415092	[0.0037-0.0046] unit increase	Affymetrix [13995440] (imputed)	N
1696	chr8	145639725	145639726	rs2272662	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	8q24.3	NR	rs2272662-C	NR	2E-9		0.0154	[0.01-0.02] unit decrease	Affymetrix [9000000] (imputed)	N
1696	chr8	145639725	145639726	rs2272662	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	8q24.3	NR	rs2272662-C	NR	4E-52		0.0369	[0.032-0.042] unit decrease	Affymetrix [9000000] (imputed)	N
1696	chr8	145640095	145640096	rs199802032	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	8q24.3	SLC39A4	rs199802032-T	0.0015	4E-6		0.8823	[0.51-1.26] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1696	chr8	145653973	145653973	rs17553600	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	118,886 East Asian ancestry individuals	NA	8q24.3		rs17553600-AC	0.40475	9E-9		0.0227325	[0.015-0.03] unit decrease	Illumina [13474352] (imputed)	N
1696	chr8	145656805	145656806	rs13273326	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	8q24.3	TONSL	rs13273326-A	0.47	1E-15		8.01	z-score increase	Affymetrix [4311822] (imputed)	N
1696	chr8	145660832	145660833	rs1010427	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	8q24.3	TONSL, AC084125.4	rs1010427-A	0.559471	1E-13		0.016808145	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1696	chr8	145661674	145661675	rs7830832	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	8q24.3	TONSL	rs7830832-A	0.473889	4E-10		0.0144589	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
1696	chr8	145662382	145662383	rs182634476	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Epithelial ovarian cancer	1,112 White British ancestry cases, 147,944 White British ancestry controls	NA	8q24.3		rs182634476-?	NR	8E-6		10.5913	[9.56-11.63]	NR [666300]	N
1696	chr8	145665698	145665699	rs2721188	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	8q24.3	NR	rs2721188-T	NR	5E-13		0.0177	[0.013-0.023] unit increase	Affymetrix [9000000] (imputed)	N
1696	chr8	145674332	145674333	rs62530423	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	8q24.3	NR	rs62530423-T	NR	2E-21		0.0409	[0.032-0.049] unit decrease	Affymetrix [9000000] (imputed)	N
1696	chr8	145674332	145674333	rs62530423	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	8q24.3	NR	rs62530423-T	NR	2E-11		0.029	[0.021-0.037] unit increase	Affymetrix [9000000] (imputed)	N
1696	chr8	145677010	145677011	rs2721195	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	8q24.3	NR	rs2721195-T	0.475039	8E-11		0.020374	[0.014-0.026] unit increase	Affymetrix [16577313] (imputed)	N
1696	chr8	145677010	145677011	rs2721195	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	8q24.3	NR	rs2721195-T	0.473941	4E-33		0.00965032	[0.008-0.0113] unit increase	Affymetrix [16582909] (imputed)	N
1696	chr8	145677010	145677011	rs2721195	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	8q24.3	NR	rs2721195-T	0.474801	8E-24		0.0110375	[0.0088-0.0133] unit increase	Affymetrix [16582621] (imputed)	N
1696	chr8	145677010	145677011	rs2721195	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	8q24.3	NR	rs2721195-T	0.473941	1E-26		0.00954442	[0.0077-0.0114] unit increase	Affymetrix [16582965] (imputed)	N
1696	chr8	145677010	145677011	rs2721195	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	8q24.3	NR	rs2721195-T	0.474801	5E-21		0.0112875	[0.0089-0.0137] unit increase	Affymetrix [16582614] (imputed)	N
1696	chr8	145677010	145677011	rs2721195	27798627	Barban N	2016-10-31	Nat Genet	Genome-wide analysis identifies 12 loci influencing human reproductive behavior.	Age at first birth	189,656 European ancestry women, 48,408 European ancestry men		8q24.3	CYHR1, GPT, RECQL4, PPP1R16A	rs2721195-T	0.469	6E-7		0.073	NR unit decrease	Illumina [2400000] (imputed)	N
1696	chr8	145677010	145677011	rs2721195	27798627	Barban N	2016-10-31	Nat Genet	Genome-wide analysis identifies 12 loci influencing human reproductive behavior.	Age at first birth	189,656 European ancestry women		8q24.3	CYHR1, GPT, RECQL4, PPP1R16A	rs2721195-T	0.469	6E-9		0.099	NR unit decrease	Illumina [2400000] (imputed)	N
1696	chr8	145680455	145680456	rs13251458	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	8q24.3	Intergenic	rs13251458-G	0.5318	1E-12		0.0139	[0.01-0.0178] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1696	chr8	145681712	145681713	rs1871541	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	8q24.3		rs1871541-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1696	chr8	145684018	145684019	rs112053519	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	8q24.3	NR	rs112053519-C	NR	4E-22		0.0566	[0.045-0.068] unit increase	Affymetrix [9000000] (imputed)	N
1696	chr8	145684018	145684019	rs112053519	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	8q24.3	NR	rs112053519-C	NR	2E-14		0.0445	[0.033-0.056] unit decrease	Affymetrix [9000000] (imputed)	N
1696	chr8	145685395	145685396	rs7002959	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	8q24.3	CYHR1	rs7002959-T	NR	1E-8		5.719	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1696	chr8	145686504	145686505	rs11774212	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	8q24.3		rs11774212-T	0.4813	2E-8		41.321564	z score increase	NR [6814003]	N
1696	chr8	145686504	145686505	rs11774212	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	8q24.3	CYHR1	rs11774212-?	NR	1E-9		0.012295297	[0.0083-0.0163] unit increase	NR [7306098]	N
1696	chr8	145686504	145686505	rs11774212	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	8q24.3		rs11774212-T	0.5163	1E-19		0.0128	[0.01-0.016] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1696	chr8	145686504	145686505	rs11774212	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	8q24.3	NR	rs11774212-T	0.5182	2E-12		0.015935825	NR unit increase	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
1696	chr8	145687474	145687475	rs10108150	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	8q24.3	NR	rs10108150-A	0.470017	2E-15		0.00867953	[0.0063-0.0111] unit increase	Affymetrix [16585854] (imputed)	N
1696	chr8	145687474	145687475	rs10108150	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	8q24.3	NR	rs10108150-A	0.470017	4E-11		0.00822427	[0.0054-0.011] unit increase	Affymetrix [16585866] (imputed)	N
1696	chr8	145690709	145690709	rs3832556	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first birth	542,901 European ancestry individuals	NA	8q24.3	CYHR1	rs3832556-T	0.4861	6E-9		0.0576	[0.038-0.077] unit decrease	NR [9744772] (imputed)	N
1696	chr8	145691914	145691915	rs112422823	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	8q24.3	Intergenic	rs112422823-C	0.5018	2E-19	(MTAG)	0.0162	[0.013-0.02] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1696	chr8	145692761	145692762	rs2291133	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	8q24.3	Intergenic	rs2291133-G	0.5924	4E-19		0.0206	[0.016-0.025] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1696	chr8	145692917	145692918	rs35968570	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Alanine transaminase levels in high alcohol intake	34,238 British ancestry individuals	NA	8q24.3		rs35968570-?	0.01266	3E-9		0.03764	unit decrease	NR [6200000] (imputed)	N
1696	chr8	145694022	145694023	rs117970388	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	8q24.3	NR	rs117970388-A	NR	5E-10		0.0405	[0.028-0.053] unit decrease	Affymetrix [9000000] (imputed)	N
1696	chr8	145694022	145694023	rs117970388	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	8q24.3	NR	rs117970388-A	NR	5E-9		0.0381	[0.025-0.051] unit increase	Affymetrix [9000000] (imputed)	N
1696	chr8	145701452	145701453	rs750472	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	8q24.3	Intergenic	rs750472-A	0.4965	4E-30	(MTAG)	0.0188	[0.016-0.022] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1696	chr8	145701452	145701453	rs750472	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	8q24.3		rs750472-A	0.495	1E-19	(conditional-joint)	0.0127	[0.01-0.0154] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1696	chr8	145701452	145701453	rs750472	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	8q24.3	Intergenic	rs750472-A	0.495	1E-27	(MTAG)	0.0143	[0.012-0.017] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1696	chr8	145701452	145701453	rs750472	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	8q24.3	Intergenic	rs750472-A	0.4965	1E-18	(MTAG)	0.0202	[0.016-0.025] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1696	chr8	145701452	145701453	rs750472	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	8q24.3	FOXH1	rs750472-A	NR	6E-11		6.544	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1696	chr8	145701452	145701453	rs750472	26401656	Burkhardt R	2015-09-24	PLoS Genet	Integration of Genome-Wide SNP Data and Gene-Expression Profiles Reveals Six Novel Loci and Regulatory Mechanisms for Amino Acids and Acylcarnitines in Whole Blood.	Blood metabolite levels	2,107 European ancestry individuals	923 Sorbian (founder/genetic isolate) individuals	8q24.3	PPP1R16A, LRRC14, KIFC2, RPL8, ZNF34, MFSD3, CYHR1, VPS28, LOC642859, COMMD5, FOXH1	rs750472-?	NR	4E-10	(Aspartic acid / Acetylcarnitine)	0.16989058	[0.12-0.22] unit decrease	Affymetrix [2619023] (imputed)	N
1696	chr8	145701452	145701453	rs750472	26401656	Burkhardt R	2015-09-24	PLoS Genet	Integration of Genome-Wide SNP Data and Gene-Expression Profiles Reveals Six Novel Loci and Regulatory Mechanisms for Amino Acids and Acylcarnitines in Whole Blood.	Blood metabolite levels	2,107 European ancestry individuals	923 Sorbian (founder/genetic isolate) individuals	8q24.3	PPP1R16A, LRRC14, KIFC2, RPL8, ZNF34, MFSD3, CYHR1, VPS28, LOC642859, COMMD5, FOXH1	rs750472-?	NR	2E-9	(Aspartic acid / Citrulline)	0.1536887	[0.1-0.2] unit decrease	Affymetrix [2619023] (imputed)	N
1696	chr8	145701452	145701453	rs750472	26401656	Burkhardt R	2015-09-24	PLoS Genet	Integration of Genome-Wide SNP Data and Gene-Expression Profiles Reveals Six Novel Loci and Regulatory Mechanisms for Amino Acids and Acylcarnitines in Whole Blood.	Blood metabolite levels	2,107 European ancestry individuals	923 Sorbian (founder/genetic isolate) individuals	8q24.3	PPP1R16A, LRRC14, KIFC2, RPL8, ZNF34, MFSD3, CYHR1, VPS28, LOC642859, COMMD5, FOXH1	rs750472-?	NR	2E-12	(Alanine / Aspartic acid)	0.06898094	[0.05-0.088] unit increase	Affymetrix [2619023] (imputed)	N
1696	chr8	145701452	145701453	rs750472	26401656	Burkhardt R	2015-09-24	PLoS Genet	Integration of Genome-Wide SNP Data and Gene-Expression Profiles Reveals Six Novel Loci and Regulatory Mechanisms for Amino Acids and Acylcarnitines in Whole Blood.	Blood metabolite levels	2,107 European ancestry individuals	923 Sorbian (founder/genetic isolate) individuals	8q24.3	PPP1R16A, LRRC14, KIFC2, RPL8, ZNF34, MFSD3, CYHR1, VPS28, LOC642859, COMMD5, FOXH1	rs750472-?	NR	2E-11	(Aspartic acid)	0.16524345	[0.12-0.21] unit decrease	Affymetrix [2619023] (imputed)	N
1696	chr8	145702771	145702772	rs4925825	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	8q24.3	NR	rs4925825-T	0.488	3E-9		0.00644578	[0.0043-0.0086] unit increase	NR [9732723] (imputed)	N
1696	chr8	145702771	145702772	rs4925825	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	8q24.3	NR	rs4925825-?	NR	1E-6		0.0084098	[0.005-0.0118] unit increase	Affymetrix [805426] (imputed)	N
1696	chr8	145707043	145707044	rs67392224	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q24.3	NR	rs67392224-C	0.483165	3E-24				Affymetrix, Illumina [21126107] (imputed)	N
1696	chr8	145707043	145707044	rs67392224	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	8q24.3	NR	rs67392224-C	0.528745	4E-26		0.02117	[0.017-0.025] SD unit increase	Affymetrix, Illumina [50282193] (imputed)	N
1696	chr8	145710909	145710909	rs201794926	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	8q24.3	PPP1R16A	rs201794926-G	0.526132	1E-18		0.0196572	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1696	chr8	145710909	145710909	rs201794926	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	8q24.3	PPP1R16A	rs201794926-G	0.4879	8E-7		0.0344	[0.021-0.048] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1696	chr8	145710909	145710909	rs201794926	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin concentration	172,851 European ancestry individuals	NA	8q24.3	PPP1R16A	rs201794926-GA	0.5268	9E-17		0.02894801	[0.022-0.036] unit increase	Affymetrix [~ 2500000] (imputed)	N
1696	chr8	145717740	145717741	rs2251727	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	8q24.3		rs2251727-T	NR	3E-14		0.0161	[0.012-0.02] unit decrease	Affymetrix, Illumina [20536605] (imputed)	N
1696	chr8	145724449	145724450	rs115230836	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Alanine aminotransferase levels	387,859 British ancestry individuals, 10,635 Asian or Asian British individuals, 7,468 Black or Black British individuals, 2,338 Chinese ancestry individuals	NA	8q24.3	NR	rs115230836-?	NR	2E-19	(African)	0.24636026	[0.19-0.3] unit decrease	Affymetrix [21347608] (imputed)	N
1696	chr8	145729718	145729719	rs139849083	29093273	Almgren P	2017-11-02	JCI Insight	Genetic determinants of circulating GIP and GLP-1 concentrations.	GLP-1 levels in response to oral glucose tolerance test (fasting)	3,344 Swedish ancestry individuals	4,905 Finnish ancestry individuals	8q24.3	GPT	rs139849083-A	0.002	9E-6		0.416	[0.23-0.6] unit decrease	Illumina [at least 81396]	N
1696	chr8	145729792	145729793	rs145331563	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	8q24.3	NR	rs145331563-A	NR	9E-114		1.5109	[1.38-1.64] unit increase	Affymetrix [9000000] (imputed)	N
1696	chr8	145729792	145729793	rs145331563	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	8q24.3	NR	rs145331563-A	NR	4E-77		1.2395	[1.11-1.37] unit decrease	Affymetrix [9000000] (imputed)	N
1696	chr8	145729820	145729821	rs774265869	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Alanine aminotransferase levels	437,724 European ancestry individuals	NA	8q24.3		rs774265869-?	NR	4E-10		2.03645	[1.42-2.66] unit decrease	NR [9800000] (imputed)	N
1696	chr8	145729999	145730000	rs147672961	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Alanine aminotransferase levels	437,724 European ancestry individuals	NA	8q24.3		rs147672961-?	NR	7E-104		1.48369	[1.35-1.62] unit decrease	NR [9800000] (imputed)	N
1696	chr8	145730016	145730017	rs531504907	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Alanine aminotransferase levels	437,724 European ancestry individuals	NA	8q24.3		rs531504907-?	NR	4E-78		1.81599	[1.62-2.01] unit decrease	NR [9800000] (imputed)	N
1696	chr8	145730017	145730018	rs138238489	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	8q24.3	NR	rs138238489-A	NR	1E-13		0.3457	[0.25-0.44] unit increase	Affymetrix [9000000] (imputed)	N
1696	chr8	145730017	145730018	rs138238489	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	8q24.3	NR	rs138238489-A	NR	1E-9		0.2847	[0.19-0.38] unit decrease	Affymetrix [9000000] (imputed)	N
1696	chr8	145730070	145730071	rs376594173	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Alanine aminotransferase levels	437,724 European ancestry individuals	NA	8q24.3		rs376594173-?	NR	1E-45		2.19985	[1.89-2.51] unit decrease	NR [9800000] (imputed)	N
1696	chr8	145730160	145730161	rs201815297	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Alanine aminotransferase levels	437,724 European ancestry individuals	NA	8q24.3		rs201815297-?	NR	1E-62		1.39936	[1.23-1.57] unit decrease	NR [9800000] (imputed)	N
1696	chr8	145730242	145730243	rs756909307	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Alanine aminotransferase levels	437,724 European ancestry individuals	NA	8q24.3		rs756909307-?	NR	1E-25		1.46014	[1.17-1.75] unit decrease	NR [9800000] (imputed)	N
1696	chr8	145730250	145730251	rs1051996668	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Alanine aminotransferase levels	437,724 European ancestry individuals	NA	8q24.3		rs1051996668-?	NR	9E-16		1.89304	[1.44-2.35] unit decrease	NR [9800000] (imputed)	N
1696	chr8	145730415	145730416	rs200088103	30718733	Moon S	2019-02-04	Sci Rep	The Korea Biobank Array: Design and Identification of Coding Variants Associated with Blood Biochemical Traits.	Alanine aminotransferase levels	6,949 Korean ancestry individuals	6,000 Korean ancestry individuals	8q24.3	GPT	rs200088103-T	0.0012	2E-9		0.6843	[0.46-0.91] unit decrease	Affymetrix [at least 805769] (imputed)	N
1696	chr8	145730716	145730717	rs376363949	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Alanine aminotransferase levels	437,724 European ancestry individuals	NA	8q24.3		rs376363949-?	NR	2E-13		1.18702	[0.86-1.52] unit decrease	NR [9800000] (imputed)	N
1696	chr8	145730774	145730775	rs140704858	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Alanine aminotransferase levels	437,724 European ancestry individuals	NA	8q24.3		rs140704858-?	NR	6E-18		1.80733	[1.39-2.22] unit decrease	NR [9800000] (imputed)	N
1696	chr8	145731251	145731252	rs1377323760	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Alanine aminotransferase levels	437,724 European ancestry individuals	NA	8q24.3		rs1377323760-?	NR	2E-10		1.71072	[1.17-2.25] unit decrease	NR [9800000] (imputed)	N
1696	chr8	145731375	145731376	rs1421129241	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Alanine aminotransferase levels	437,724 European ancestry individuals	NA	8q24.3		rs1421129241-?	NR	2E-23		2.05701	[1.64-2.47] unit decrease	NR [9800000] (imputed)	N
1696	chr8	145732033	145732034	rs1303879882	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Alanine aminotransferase levels	437,724 European ancestry individuals	NA	8q24.3		rs1303879882-?	NR	7E-19		1.47462	[1.13-1.82] unit decrease	NR [9800000] (imputed)	N
1696	chr8	145732113	145732114	rs141505249	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	8q24.3		rs141505249-C	NR	1E-437		1.2242	[1.17-1.28] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
1696	chr8	145732113	145732114	rs141505249	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Alanine aminotransferase levels	437,724 European ancestry individuals	NA	8q24.3		rs141505249-?	NR	3E-507		1.47737	[1.42-1.54] unit decrease	NR [9800000] (imputed)	N
1696	chr8	145732150	145732151	rs143462595	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Alanine aminotransferase levels	437,724 European ancestry individuals	NA	8q24.3		rs143462595-?	NR	1E-65		0.402536	[0.36-0.45] unit decrease	NR [9800000] (imputed)	N
1696	chr8	145732179	145732180	rs147998249	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	8q24.3	NR	rs147998249-C	NR	6E-629		1.5545	[1.5-1.61] unit increase	Affymetrix [9000000] (imputed)	N
1696	chr8	145732179	145732180	rs147998249	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	8q24.3	NR	rs147998249-C	NR	9E-428		1.2794	[1.22-1.34] unit decrease	Affymetrix [9000000] (imputed)	N
1696	chr8	145732179	145732180	rs147998249	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Alanine aminotransferase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	8q24.3	GPT	rs147998249-?		3E-38		1.4295	[1.21-1.65] unit increase	Illumina [31500000] (imputed)	N
1696	chr8	145732224	145732225	rs201282843	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Alanine aminotransferase levels	437,724 European ancestry individuals	NA	8q24.3		rs201282843-?	NR	1E-49		2.03413	[1.76-2.31] unit decrease	NR [9800000] (imputed)	N
1696	chr8	145733885	145733886	rs116953825	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	8q24.3	NR	rs116953825-T	NR	2E-12		0.0529	[0.038-0.068] unit increase	Affymetrix [9000000] (imputed)	N
1696	chr8	145740374	145740375	rs35842750	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	8q24.3	NR	rs35842750-T	NR	4E-14		0.2379	[0.18-0.3] unit increase	Affymetrix [9000000] (imputed)	N
1696	chr8	145740374	145740375	rs35842750	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	8q24.3	NR	rs35842750-T	NR	7E-10		0.1939	[0.13-0.26] unit decrease	Affymetrix [9000000] (imputed)	N
1696	chr8	145741701	145741702	rs4244612	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	8q24.3	NR	rs4244612-G	NR	3E-9		0.0151	[0.01-0.02] unit increase	Affymetrix [9000000] (imputed)	N
1696	chr8	145741701	145741702	rs4244612	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	8q24.3	NR	rs4244612-G	NR	2E-9		0.0146	[0.0099-0.0193] unit increase	Affymetrix [9000000] (imputed)	N
1696	chr8	145741701	145741702	rs4244612	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	8q24.3	NR	rs4244612-G	NR	2E-30		0.0278	[0.023-0.033] unit increase	Affymetrix [9000000] (imputed)	N
1696	chr8	145741701	145741702	rs4244612	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	8q24.3	NR	rs4244612-G	NR	9E-20		0.0221	[0.017-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
1696	chr8	145741701	145741702	rs4244612	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	8q24.3	RECQL4	rs4244612-C	NR	3E-8		5.569	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1696	chr8	145744428	145744429	rs2721173	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	8q24.3	NR	rs2721173-C	0.461233	7E-9		0.03638399	[0.024-0.049] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1696	chr8	145744428	145744429	rs2721173	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	8q24.3	NR	rs2721173-C	0.529832	1E-16				Affymetrix, Illumina [22063850] (imputed)	N
1696	chr8	145744428	145744429	rs2721173	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	8q24.3	LRRC14	rs2721173-T	0.4714	7E-9		0.011699863	[0.0077-0.0157] unit decrease	Affymetrix [up to 18485882] (imputed)	N
1696	chr8	145744428	145744429	rs2721173	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	8q24.3	Intergenic	rs2721173-T	0.4728	6E-9		0.0166	[0.011-0.022] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
1696	chr8	145744428	145744429	rs2721173	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	8q24.3	NR	rs2721173-T	NR	3E-9		5.938	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1696	chr8	145744428	145744429	rs2721173	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	8q24.3	LRRC14	rs2721173-T	NR	1E-14		0.022603778	[0.017-0.028] unit decrease	Affymetrix [NR]	N
1696	chr8	145744428	145744429	rs2721173	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability (MTAG)	436,124 European ancestry individuals	NA	8q24.3	LRRC14	rs2721173-?	NR	4E-9		5.899	z score decrease	Affymetrix, Illumina, Perlegen [7333576] (imputed)	N
1696	chr8	145744428	145744429	rs2721173	25201988	Rietveld CA	2014-09-08	Proc Natl Acad Sci U S A	Common genetic variants associated with cognitive performance identified using the proxy-phenotype method.	Educational attainment	106,736 European ancestry individuals	NA	8q24.3	GPT, PPP1R16A, VPS28, MFSD3, RECQL4, LRRC14, ARHGAP39, FOXH1, KIFC2, CYHR1, CPSF1, SCRT1, LRRC24	rs2721173-T	0.473	9E-6		0.02	[NR] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1696	chr8	145744617	145744618	rs3757966	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	8q24.3	LRRC14	rs3757966-A	0.468855	7E-15		0.017280696	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1696	chr8	145744617	145744618	rs3757966	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	8q24.3		rs3757966-?	NR	2E-18				NR [~ 8900000] (imputed)	N
1696	chr8	145747919	145747920	rs13277542	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Alanine levels	115,078 European ancestry individuals	NA	8q24.3		rs13277542-T	0.511118	8E-15		0.0322538	[0.024-0.04] unit increase	NR [11722792] (imputed)	N
1696	chr8	145747919	145747920	rs13277542	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	8q24.3	NR	rs13277542-G	0.487326	4E-19		0.018036	[0.014-0.022] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
1697	chr8	145756169	145756170	rs873884	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	8q24.3	NA	rs873884-G		9E-13		0.0142661	[0.01-0.018] unit increase	Illumina [13288253] (imputed)	N
1697	chr8	145757842	145757843	rs117567558	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	8q24.3	NR	rs117567558-G	NR	7E-15		0.039	[0.029-0.049] unit decrease	Affymetrix [9000000] (imputed)	N
1697	chr8	145757842	145757843	rs117567558	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	8q24.3	NR	rs117567558-G	NR	3E-12		0.0349	[0.025-0.045] unit increase	Affymetrix [9000000] (imputed)	N
1697	chr8	145771153	145771154	rs11994207	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	8q24.3	NR	rs11994207-T	NR	3E-56		0.3517	[0.31-0.4] unit increase	Affymetrix [9000000] (imputed)	N
1697	chr8	145771153	145771154	rs11994207	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	8q24.3	NR	rs11994207-T	NR	1E-32		0.264	[0.22-0.31] unit decrease	Affymetrix [9000000] (imputed)	N
1697	chr8	145778127	145778128	rs2620636	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	8q24.3	NR	rs2620636-T	NR	8E-13		0.0391	[0.028-0.05] unit decrease	Affymetrix [9000000] (imputed)	N
1697	chr8	145778127	145778128	rs2620636	24665060	Argos M	2014-03-24	J Med Genet	Genome-wide association study of smoking behaviours among Bangladeshi adults.	Smoking initiation	754 Bangladeshi ancestry never smoker males, 2,565 Bangladeshi ancestry never smoker females, 1,837 Bangladeshi ancestry ever smoker males, 198 Bangladeshi ancestry ever smoker females	NA	8q24.3	NR	rs2620636-?		4E-6	(females)			Illumina [1211988] (imputed)	N
1697	chr8	145808034	145808035	rs4925812	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	8q24.3	NR	rs4925812-?	NR	5E-8		5.45	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1697	chr8	145837489	145837490	rs114895795	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Alanine aminotransferase levels	387,859 British ancestry individuals, 10,635 Asian or Asian British individuals, 7,468 Black or Black British individuals, 2,338 Chinese ancestry individuals	NA	8q24.3	NR	rs114895795-?	NR	1E-13	(African)	0.19918072	[0.15-0.25] unit decrease	Affymetrix [21347608] (imputed)	N
1697	chr8	145840376	145840377	rs117889339	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	8q24.3	NR	rs117889339-T	NR	9E-20		0.0722	[0.057-0.088] unit decrease	Affymetrix [9000000] (imputed)	N
1697	chr8	145840376	145840377	rs117889339	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	8q24.3	NR	rs117889339-T	NR	2E-11		0.0529	[0.037-0.068] unit increase	Affymetrix [9000000] (imputed)	N
1697	chr8	145848860	145848861	rs72697668	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	8q24.3	NR	rs72697668-C	NR	4E-9		0.0291	[0.019-0.039] unit decrease	Affymetrix [9000000] (imputed)	N
1697	chr8	145879882	145879883	rs12719778	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Type 2 diabetes	approximately 459,000 European ancestry individuals	NA	8q24.3		rs12719778-?	NR	8E-8				NR [~ 8900000] (imputed)	N
1697	chr8	145879882	145879883	rs12719778	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	8q24.3	BOP1	rs12719778-T	0.5376	5E-9		1.04	[1.03-1.05]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1698	chr8	145915323	145915324	rs12216824	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	8q24.3	NR	rs12216824-?	NR	4E-6		4.639	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1698	chr8	145948439	145948440	rs61732715	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	8q24.3	NR	rs61732715-C	NR	2E-14		0.0483	[0.036-0.061] unit increase	Affymetrix [9000000] (imputed)	N
1698	chr8	145948439	145948440	rs61732715	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	8q24.3	NR	rs61732715-C	NR	8E-10		0.0386	[0.026-0.051] unit decrease	Affymetrix [9000000] (imputed)	N
1698	chr8	145955006	145955007	rs2467663	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	8q24.3	ZNF251	rs2467663-T	0.66	5E-25		10.3	z-score increase	Affymetrix [4312306] (imputed)	N
1698	chr8	145964319	145964320	rs56227941	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	8q24.3	NR	rs56227941-C	NR	5E-16		0.0384	[0.029-0.048] unit decrease	Affymetrix [9000000] (imputed)	N
1698	chr8	146003566	146003567	rs2294120	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	8q24.3	ZNF34	rs2294120-G	0.455879299759268	2E-8		0.0443	[0.029-0.06] unit decrease	NR [5035015] (imputed)	N
1699	chr8	146024911	146024912	rs62531503	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	8q24.3	NR	rs62531503-G	NR	1E-70		0.1733	[0.15-0.19] unit increase	Affymetrix [9000000] (imputed)	N
1699	chr8	146024911	146024912	rs62531503	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	8q24.3	NR	rs62531503-G	NR	1E-45		0.1381	[0.12-0.16] unit decrease	Affymetrix [9000000] (imputed)	N
1699	chr8	146024941	146024942	rs571535499	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	150,545 East Asian ancestry individuals	NA	8q24.3		rs571535499-T	5.09E-4	9E-41		1.07088	[0.91-1.23] unit decrease	Illumina [13478866] (imputed)	N
1699	chr8	146068321	146068322	rs9004	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	8q24.3	NR	rs9004-T	NR	1E-15		0.0205	[0.015-0.026] unit increase	Affymetrix [9000000] (imputed)	N
1699	chr8	146068321	146068322	rs9004	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	8q24.3	NR	rs9004-T	NR	8E-10		0.0157	[0.011-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
1699	chr8	146068321	146068322	rs9004	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Logical memory (immediate recall) in normal cognition	305 European ancestry cognitively normal individuals	NA	8q24.3	ZNF7, ZNF251, ZNF34, RPL8, ZNF517, COMMD5, ZNF250, ZNF16	rs9004-T	0.31	2E-7		0.3	[0.18-0.42] unit decrease	Illumina [7797526] (imputed)	N
1699	chr8	146068593	146068594	rs1735408	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	8q24.3	NR	rs1735408-C	NR	2E-19		0.0271	[0.021-0.033] unit increase	Affymetrix [9000000] (imputed)	N
1699	chr8	146068593	146068594	rs1735408	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	8q24.3	NR	rs1735408-C	NR	2E-11		0.0201	[0.014-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
1699	chr8	146128339	146128340	rs2976464	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Logical memory (immediate recall) in normal cognition	305 European ancestry cognitively normal individuals	NA	8q24.3	ZNF517, ZNF7, COMMD5, ZNF250, ZNF16, ZNF252, TMED10P1, C8orf77	rs2976464-G	0.43	5E-7		0.27	[0.17-0.37] unit decrease	Illumina [7797526] (imputed)	N
1699	chr8	146136414	146136415	rs71522403	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	8q24.3	NR	rs71522403-G	NR	6E-12		0.0237	[0.017-0.03] unit increase	Affymetrix [9000000] (imputed)	N
1700	chr8	146170380	146170381	rs76706970	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	8q24.3	NR	rs76706970-A	NR	5E-15		0.0884	[0.066-0.111] unit increase	Affymetrix [9000000] (imputed)	N
1700	chr8	146171163	146171164	rs147852159	25663218	Verhaaren BF	2015-07-02	Circ Cardiovasc Genet	Multiethnic genome-wide association study of cerebral white matter hyperintensities on MRI.	White matter hyperintensity burden	17,936 European ancestry individuals, 1,943 African American ancestry individuals, 795 Hispanic individuals, 204 Chinese ancestry individuals, 201 Malay ancestry individuals	NA	8q24.3	ZNF16	rs147852159-G	0.03	3E-7	(AA)			Affymetrix, Illumina [14227402] (imputed)	N
585	chr9	46430	46431	rs2811026	32339537	Roberts V	2020-04-24	J Invest Dermatol	Genome wide association study identifies genetic associations with perceived age.	Youthful appearance (self-reported)	423,992 European ancestry individuals	NA	9p24.3	FAM138C	rs2811026-C	0.518119	2E-11		0.9650994	NR	Affymetrix [~ 9600000] (imputed)	N
586	chr9	132717	132718	rs2998949	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	9p24.3	CBWD1	rs2998949-C	0.244595	5E-17		0.026706925	[0.02-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
586	chr9	143497	143498	rs28759486	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	9p24.3	CBWD1	rs28759486-G	0.218855	2E-14		0.023506202	[0.017-0.03] unit increase	Affymetrix [93095623] (imputed)	N
586	chr9	178805	178806	rs200835133	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin I concentration	1,606 African American individuals	NA	9p24.3		rs200835133-?	NR	4E-6		0.24	[0.14-0.34] unit increase	Affymetrix, Illumina [NR] (imputed)	N
586	chr9	204013	204014	rs573246	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Brown vs. black hair color	269,394 British ancestry brown hair individuals, 14,526 British ancestry black hair individuals	NA	9p24.3	C9orf66	rs573246-?	NR	8E-9		1.0730765	NR	Affymetrix [9154080] (imputed)	N
586	chr9	211358	211359	rs76532765	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Carpal tunnel syndrome	18,855 European ancestry cases, 461,346 European ancestry controls, 192 East Asian ancestry cases, 178,534 East Asian ancestry controls	NA	9p24.3		rs76532765-A	NR	3E-8		0.2636	[0.17-0.36] unit increase	Affymetrix, Illumina [25844227] (imputed)	N
586	chr9	211761	211762	rs520015	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous melanoma or hair colour	36,760 European ancestry cutaneous melanoma cases, 375,188 European ancestry controls, 352,662 European ancestry individuals	NA	9p24.3	C9orf66	rs520015-C	0.510209	1E-43				Affymetrix, Illumina [NR] (imputed)	N
586	chr9	211761	211762	rs520015	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous malignant melanoma	36,760 European ancestry cases, 375,188 European ancestry controls	NA	9p24.3	CBWD1	rs520015-?	NR	9E-7				Affymetrix, Illumina [NR] (imputed)	N
586	chr9	211761	211762	rs520015	32339537	Roberts V	2020-04-24	J Invest Dermatol	Genome wide association study identifies genetic associations with perceived age.	Youthful appearance (self-reported)	423,992 European ancestry individuals	NA	9p24.3	C9orf66, DOCK8	rs520015-C	0.512691	1E-58		1.0726527	NR	Affymetrix [~ 9600000] (imputed)	N
586	chr9	211761	211762	rs520015	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	9p24.3		rs520015-?	NR	7E-9				NR [~ 8900000] (imputed)	N
586	chr9	211761	211762	rs520015	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	9p24.3		rs520015-?	NR	2E-32				NR [~ 8900000] (imputed)	N
586	chr9	211761	211762	rs520015	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	9p24.3	DOCK8	rs520015-?	NR	7E-27		1.0864842	NR	Affymetrix [9154080] (imputed)	N
586	chr9	211761	211762	rs520015	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	NA	9p24.3	CBWD1	rs520015-C	0.513	3E-11		0.2003	[0.14-0.26] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
586	chr9	223338	223339	rs617453	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	9p24.3	NR	rs617453-A	0.452101	1E-12		0.022303	[0.016-0.028] unit decrease	NR [19129689] (imputed)	N
586	chr9	224741	224742	rs600951	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	9p24.3		rs600951-?	NR	2E-9				NR [~ 8900000] (imputed)	N
586	chr9	224741	224742	rs600951	30429480	Duffy DL	2018-11-14	Nat Commun	Novel pleiotropic risk loci for melanoma and nevus density implicate multiple biological pathways.	Nevus count or cutaneous melanoma	52,506 European ancestry individuals, 12,874 European ancestry cases, 23,203 European ancestry controls	NA	9p24.3	DOCK8	rs600951-?	NR	1E-12				Affymetrix, Illumina [7850345] (imputed)	N
586	chr9	224741	224742	rs600951	30429480	Duffy DL	2018-11-14	Nat Commun	Novel pleiotropic risk loci for melanoma and nevus density implicate multiple biological pathways.	Nevus count	52,506 European ancestry individuals	NA	9p24.3	DOCK8	rs600951-?	NR	2E-8	(Han & Eskin random effects)			Affymetrix, Illumina [up to 31337615] (imputed)	N
586	chr9	232147	232148	rs78216177	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Varicose veins	22,037 European ancestry cases, 437,665 European ancestry controls, 474 East Asian ancestry cases, 178,252 East Asian ancestry controls	NA	9p24.3		rs78216177-C	NR	1E-8		0.0903	[0.059-0.121] unit increase	Affymetrix, Illumina [25842955] (imputed)	N
586	chr9	235200	235201	rs593179	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Nevus count or cutaneous melanoma	36,760 European ancestry cutaneous melanoma cases, 375,188 European ancestry controls, 12,930 European ancestry individuals, 52,847 individuals	NA	9p24.3	DOCK8	rs593179-A	0.450277	4E-12				Affymetrix, Illumina [NR] (imputed)	N
586	chr9	239312	239313	rs471756	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	9p24.3	DOCK8	rs471756-C	0.54	4E-9		0.02130772	[0.014-0.028] unit decrease	Affymetrix [~ 2500000] (imputed)	N
586	chr9	246356	246357	rs785830	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	9p24.3	DOCK8	rs785830-G	0.4961	5E-15		0.02815775	[0.021-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
586	chr9	248427	248428	rs785836	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	9p24.3	DOCK8	rs785836-C	0.646612	1E-10		0.0125523	[0.0087-0.0164] unit decrease	NR [13737936] (imputed)	N
586	chr9	248427	248428	rs785836	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	9p24.3		rs785836-?	NR	1E-10		0.013962	[0.0097-0.0183] unit decrease	Affymetrix [20259828] (imputed)	N
586	chr9	250608	250609	rs680567	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	9p24.3		rs680567-?	NR	7E-12				NR [~ 8900000] (imputed)	N
587	chr9	262672	262673	rs78029983	34684344	Zhang Z	2021-09-24	Nutrients	Vitamin D and the Risks of Depression and Anxiety: An Observational Analysis and Genome-Wide Environment Interaction Study.	Anxiety score x vitamin D PRS interaction (COJO adjusted)	120,590 European ancestry individuals	NA	9p24.3		rs78029983-?	NR	2E-10		1.08	[0.71-1.45] unit decrease	Affymetrix [NR] (imputed)	N
587	chr9	262672	262673	rs78029983	34684344	Zhang Z	2021-09-24	Nutrients	Vitamin D and the Risks of Depression and Anxiety: An Observational Analysis and Genome-Wide Environment Interaction Study.	Anxiety score x vitamin D PRS interaction	120,590 European ancestry individuals	NA	9p24.3		rs78029983-?	NR	2E-8		1.1	[0.71-1.49] unit decrease	Affymetrix [NR] (imputed)	N
587	chr9	269509	269510	rs554243	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	9p24.3		rs554243-G	NR	3E-9		0.0126	[0.0085-0.0167] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
587	chr9	269509	269510	rs554243	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	9p24.3	DOCK8, RP11-59O6.3	rs554243-G	0.385696	8E-9		0.013247626	[0.0087-0.0177] unit increase	Affymetrix [93095623] (imputed)	N
587	chr9	271625	271626	rs192864327	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Platelet count	444,866 European ancestry individuals	NA	9p24.3		rs192864327-?	NR	3E-10		0.200567	[0.14-0.26] unit decrease	NR [9800000] (imputed)	N
587	chr9	271625	271626	rs192864327	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean platelet volume	445,364 European ancestry individuals	NA	9p24.3		rs192864327-?	NR	1E-31		0.343446	[0.28-0.4] unit increase	NR [9800000] (imputed)	N
587	chr9	273145	273147	rs139204327	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	9p24.3	DOCK8	rs139204327-T	0.758427	3E-15		0.022678822	[0.017-0.028] unit increase	Affymetrix [93095623] (imputed)	N
587	chr9	273159	273160	rs540909	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9p24.3	NR	rs540909-T	0.24698	7E-20				Affymetrix, Illumina [22063850] (imputed)	N
587	chr9	273159	273160	rs540909	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	9p24.3	NR	rs540909-T	0.244483	2E-22		0.02161	[0.017-0.026] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
587	chr9	273159	273160	rs540909	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	9p24.3		rs540909-?	NR	9E-23				NR [~ 8900000] (imputed)	N
587	chr9	273178	273178	rs3215853	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	9p24.3	DOCK8	rs3215853-GA	0.756411	1E-21		0.02473006	[0.02-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
587	chr9	273178	273178	rs3215853	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	9p24.3	DOCK8	rs3215853-GA	0.7579	2E-42		0.05788222	[0.05-0.066] unit decrease	Affymetrix [~ 2500000] (imputed)	N
587	chr9	274107	274108	rs10757606	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	9p24.3		rs10757606-G	0.661	2E-9				Affymetrix [10369434] (imputed)	N
587	chr9	274432	274433	rs13287938	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	9p24.3	DOCK8	rs13287938-T	0.091534	7E-14		0.031933818	[0.024-0.04] unit decrease	Affymetrix [93095623] (imputed)	N
587	chr9	274640	274641	rs636918	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	9p24.3	DOCK8	rs636918-C	0.624193	5E-30		0.032929905	[0.027-0.039] unit increase	Affymetrix [93095623] (imputed)	N
587	chr9	276052	276053	rs2992836	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	9p24.3	DOCK8	rs2992836-T	0.1877	7E-11		0.03073454	[0.022-0.04] unit decrease	Affymetrix [~ 2500000] (imputed)	N
587	chr9	280119	280119	rs34324925	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	9p24.3	DOCK8	rs34324925-AG	0.189477	4E-13		0.022508483	[0.016-0.029] unit increase	Affymetrix [93095623] (imputed)	N
587	chr9	282589	282589	rs528543374	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	9p24.3	DOCK8	rs528543374-TA	0.181611	1E-19		0.02701808	[0.021-0.033] unit increase	Affymetrix [93095623] (imputed)	N
587	chr9	282589	282589	rs528543374	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	9p24.3	DOCK8	rs528543374-TA	0.181595	3E-12		0.020813346	[0.015-0.027] unit increase	Affymetrix [93095623] (imputed)	N
587	chr9	282589	282589	rs528543374	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	9p24.3	DOCK8	rs528543374-TA	0.181626	2E-24		0.030536145	[0.025-0.036] unit increase	Affymetrix [93095623] (imputed)	N
587	chr9	282737	282738	rs13291664	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9p24.3	NR	rs13291664-G	0.180746	6E-25				Affymetrix, Illumina [24649327] (imputed)	N
587	chr9	282737	282738	rs13291664	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	9p24.3	NR	rs13291664-G	0.186933	2E-28		0.026196	[0.022-0.031] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
587	chr9	282737	282738	rs13291664	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9p24.3	NR	rs13291664-G	0.181785	4E-29				Affymetrix, Illumina [23114412] (imputed)	N
587	chr9	282737	282738	rs13291664	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	9p24.3	NR	rs13291664-G	0.187987	1E-32		0.029314	[0.024-0.034] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
587	chr9	286490	286491	rs3209441	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	9p24.3		rs3209441-A	NR	2E-14		0.0233	[0.017-0.029] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
587	chr9	286490	286491	rs3209441	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	9p24.3		rs3209441-A	NR	7E-18		0.0262	[0.02-0.032] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
587	chr9	286490	286491	rs3209441	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	9p24.3	DOCK8	rs3209441-A	0.1877	3E-11		0.03037823	[0.021-0.039] unit increase	Affymetrix [~ 2500000] (imputed)	N
587	chr9	286490	286491	rs3209441	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	9p24.3	DOCK8	rs3209441-A	0.1877	2E-11		0.03064761	[0.022-0.04] unit increase	Affymetrix [~ 2500000] (imputed)	N
587	chr9	286490	286491	rs3209441	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	9p24.3	DOCK8	rs3209441-A	0.1877	1E-11		0.03096098	[0.022-0.04] unit increase	Affymetrix [~ 2500000] (imputed)	N
587	chr9	288413	288414	rs66865237	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	9p24.3		rs66865237-?	NR	4E-19				NR [~ 8900000] (imputed)	N
587	chr9	289060	289061	rs6476030	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	9p24.3	DOCK8	rs6476030-G	0.086	3E-6	(Hip circumference change )	0.02	[NR] cm/y increase	Illumina [899892]	N
587	chr9	289481	289481	rs34722895	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	9p24.3		rs34722895-CAT	NR	1E-34		0.0307	[0.026-0.036] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
587	chr9	289481	289481	rs34722895	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	9p24.3	DOCK8	rs34722895-CAT	0.31734	6E-22		0.027649485	[0.022-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
587	chr9	304669	304670	rs146490788	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Platelet distribution width	445,262 European ancestry individuals	NA	9p24.3		rs146490788-?	NR	3E-13		0.261439	[0.19-0.33] unit increase	NR [9800000] (imputed)	N
587	chr9	305427	305428	rs1969949	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	9p24.3	DOCK8	rs1969949-G	0.7214	2E-11		0.02701586	[0.019-0.035] unit decrease	Affymetrix [~ 2500000] (imputed)	N
587	chr9	305427	305428	rs1969949	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	9p24.3	DOCK8	rs1969949-G	0.7214	2E-10		0.02574936	[0.018-0.034] unit decrease	Affymetrix [~ 2500000] (imputed)	N
587	chr9	305427	305428	rs1969949	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	9p24.3	DOCK8	rs1969949-G	0.7214	2E-9		0.02414538	[0.016-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
587	chr9	305427	305428	rs1969949	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	9p24.3	DOCK8	rs1969949-G	0.7214	3E-11		0.02690919	[0.019-0.035] unit decrease	Affymetrix [~ 2500000] (imputed)	N
587	chr9	306276	306277	rs35381637	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	9p24.3	DOCK8	rs35381637-A	0.16	3E-6		0.059	NR unit increase	Illumina [NR] (imputed)	N
587	chr9	306733	306734	rs62533402	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	9p24.3	DOCK8	rs62533402-T	0.84	3E-6		0.059	NR unit decrease	Illumina [NR] (imputed)	N
587	chr9	307196	307197	rs10813156	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	9p24.3	DOCK8	rs10813156-C	0.695852	6E-17		0.027048413	[0.021-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
587	chr9	307265	307266	rs4741775	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	9p24.3	DOCK8	rs4741775-G	0.7024	5E-18		0.021167766	[0.016-0.026] unit increase	Affymetrix [93095623] (imputed)	N
587	chr9	310671	310672	rs10969550	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on cognitive performance (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	9p24.3		rs10969550-?	NR	3E-8				NR [NR]	N
587	chr9	310671	310672	rs10969550	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on Townsend deprivation index (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	9p24.3		rs10969550-?	NR	3E-8				NR [NR]	N
587	chr9	310671	310672	rs10969550	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Neuroticism	170,911 European ancestry individuals	NA	9p24.3	NR	rs10969550-T	0.238	6E-6		0.01854899	[0.011-0.027] unit decrease	Affymetrix [up to 6544775] (imputed)	N
587	chr9	310969	310970	rs10969557	26732429	Wang Z	2016-01-04	Hum Mol Genet	Meta-analysis of genome-wide association studies identifies multiple lung cancer susceptibility loci in never-smoking Asian women.	Lung cancer	6,877 East Asian ancestry never smoker cases, 6,277 East Asian ancestry never smoker controls	5,878 East Asian ancestry never smoker cases, 7,046 East Asian ancestry never smoker controls	9p24.3	Intergenic	rs10969557-G	0.227	6E-6		1.11	[1.06-1.16]	Affymetrix, Illumina [7564751] (imputed)	N
587	chr9	314515	314516	rs13290870	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	9p24.3		rs13290870-G	0.566	5E-13				Affymetrix [10369434] (imputed)	N
587	chr9	315735	315736	rs12237955	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	9p24.3	DOCK8	rs12237955-C	0.229636	2E-9		0.017373119	[0.012-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
587	chr9	329343	329344	rs56318916	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	9p24.3	DOCK8	rs56318916-C	0.1938	5E-14		0.03474616	[0.026-0.044] unit decrease	Affymetrix [~ 2500000] (imputed)	N
587	chr9	329343	329344	rs56318916	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	9p24.3	DOCK8	rs56318916-C	0.1935	1E-45		0.06504397	[0.056-0.074] unit increase	Affymetrix [~ 2500000] (imputed)	N
587	chr9	331489	331490	rs10813766	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	9p24.3		rs10813766-T	0.34	3E-24				Affymetrix [10369434] (imputed)	N
587	chr9	331489	331490	rs10813766	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	9p24.3	DOCK8	rs10813766-G	0.661368	1E-20		0.029154459	[0.023-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
587	chr9	331489	331490	rs10813766	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9p24.3	NR	rs10813766-T	0.339263	1E-156				Affymetrix, Illumina [17210439] (imputed)	N
587	chr9	331489	331490	rs10813766	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	9p24.3	NR	rs10813766-T	0.339156	2E-156		0.054225	[0.05-0.058] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
587	chr9	331489	331490	rs10813766	22139419	Gieger C	2011-11-30	Nature	New gene functions in megakaryopoiesis and platelet formation.	Mean platelet volume	13,106 European ancestry individuals, 1,652 Val Borbera (founder/genetic isolate) individuals, 593 Carlantino (founder/genetic isolate) individuals, 1,146 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,213 South Tyrolean (founder/genetic isolate) individuals, 890 Sorbian (founder/genetic isolate) individuals	Up to 16,960 European ancestry individuals, 855 Cliento (founder/genetic isolate) individuals, 1,023 Talana (founder/genetic isolate) individuals	9p24.3	DOCK8	rs10813766-T	NR	4E-12		0.007	[0.005-0.009] ln(fl) increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
587	chr9	332151	332152	rs1536609	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9p24.3	NR	rs1536609-A	0.669162	6E-48				Affymetrix, Illumina [24588908] (imputed)	N
587	chr9	332151	332152	rs1536609	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	9p24.3	NR	rs1536609-A	0.658905	4E-48		0.028447	[0.025-0.032] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
587	chr9	334336	334337	rs10970979	35215271	Almandil NB	2022-01-27	Pharmaceuticals (Basel)	Integration of Transcriptome and Exome Genotyping Identifies Significant Variants with Autism Spectrum Disorder.	Autism spectrum disorder	70 Arab ancestry cases, 132 Arab ancestry controls	NA	9p24.3	NA	rs10970979-G	0.2045	7E-6		3.122	[1.883-5.176]	Illumina [243345]	N
587	chr9	334336	334337	rs10970979	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	9p24.3	DOCK8	rs10970979-G	0.304943	3E-41		0.035502672	[0.03-0.041] unit decrease	Affymetrix [93095623] (imputed)	N
587	chr9	334336	334337	rs10970979	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	9p24.3	DOCK8	rs10970979-G	0.304931	1E-64		0.04258538	[0.038-0.047] unit increase	Affymetrix [93095623] (imputed)	N
587	chr9	339719	339720	rs138256067	32724131	Li QS	2020-07-28	Sci Rep	Genome-wide association study and polygenic risk score analysis of esketamine treatment response.	Response to esketamine in treatment resistant depression	255 European ancestry individuals	NA	9p24.3	NR	rs138256067-?		6E-6		43.956	[25.11-62.8] unit decrease	NR [NR] (imputed)	N
587	chr9	341828	341829	rs7869524	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	9p24.3	DOCK8	rs7869524-T	0.436183	2E-9		0.015133807	[0.01-0.02] unit increase	Affymetrix [93095623] (imputed)	N
587	chr9	341828	341829	rs7869524	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	9p24.3	DOCK8	rs7869524-T	0.4355	5E-33		0.04414729	[0.037-0.051] unit decrease	Affymetrix [~ 2500000] (imputed)	N
588	chr9	420578	420579	rs116920018	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Platelet distribution width	445,262 European ancestry individuals	NA	9p24.3		rs116920018-?	NR	1E-55		0.20929	[0.18-0.24] unit increase	NR [9800000] (imputed)	N
588	chr9	420578	420579	rs116920018	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean platelet volume	445,364 European ancestry individuals	NA	9p24.3		rs116920018-?	NR	2E-37		0.16849	[0.14-0.19] unit decrease	NR [9800000] (imputed)	N
588	chr9	420578	420579	rs116920018	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	9p24.3	DOCK8	rs116920018-G	0.004633	3E-36		0.20859559	[0.18-0.24] unit increase	Affymetrix [93095623] (imputed)	N
588	chr9	420578	420579	rs116920018	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	9p24.3	DOCK8	rs116920018-G	0.00463000000000002	1E-14		0.12897654	[0.096-0.162] unit decrease	Affymetrix [93095623] (imputed)	N
588	chr9	426214	426215	rs12353411	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	9p24.3	NR	rs12353411-?	NR	5E-21				Affymetrix [NR]	N
588	chr9	468704	468705	rs10974637	30621171	Coltell O	2019-01-04	Nutrients	Genome-Wide Association Study (GWAS) on Bilirubin Concentrations in Subjects with Metabolic Syndrome: Sex-Specific GWAS Analysis and Gene-Diet Interactions in a Mediterranean Population.	Serum bilirubin levels in metabolic syndrome	188 European ancestry male individuals, 242 European ancestry female individuals	NA	9p24.3	KANK1	rs10974637-C	0.105	8E-6	(women)	0.189	[0.11-0.27] mg/dL increase	Illumina [622468]	N
588	chr9	484769	484770	rs41314228	33190678	Ho YYW	2020-10-01	Twin Res Hum Genet	Comparison of Genome-Wide Association Scans for Quantitative and Observational Measures of Human Hair Curvature.	Hair curvature (quantitative)	2,225 European ancestry individuals	NA	9p24.3	NR	rs41314228-?		5E-6		0.016	[0.0091-0.0229] unit increase	Illumina [7533529] (imputed)	N
589	chr9	540318	540319	rs62531470	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	9p24.3	KANK1	rs62531470-T	0.999	2E-6	(AA)	0.356	unit increase	Illumina [NR] (imputed)	N
589	chr9	560076	560077	rs4742094	29921221	Cha S	2018-06-19	BMC Genomics	Identification of five novel genetic loci related to facial morphology by genome-wide association studies.	Eye morphology	5,643 Korean ancestry individuals	1,926 Korean ancestry individuals	9p24.3	KANK1	rs4742094-G	0.27	2E-6	(Left eye angle of en-ps)	0.519	[NR] unit increase	Affymetrix [311944]	N
589	chr9	565916	565917	rs7027930	22424883	Imboden M	2012-03-15	J Allergy Clin Immunol	Genome-wide association study of lung function decline in adults with and without asthma.	Pulmonary function decline	1,441 European ancestry asthma cases, 2,677 European ancestry controls	1,160 European ancestry asthma cases, 10,858 European ancestry controls	9p24.3	intergenic	rs7027930-?	NR	9E-6	(FEV1/FVC decline in asthmatics)	0.1993	[0.11-0.29] unit increase	Illumina [~ 2500000] (imputed)	N
589	chr9	571581	571582	rs12684488	33842983	Chung RH	2021-04-12	Diabetologia	Multi-omics analysis identifies CpGs near G6PC2 mediating the effects of genetic variants on fasting glucose.	Fasting blood glucose	18,122 Han Chinese ancestry individuals	1,989 Han Chinese ancestry individuals	9p24.3	KANK1	rs12684488-A	0.26	2E-13		0.089	[0.065-0.113] unit increase	Affymetrix [774398] (imputed)	N
589	chr9	603915	603916	rs2804301	31624269	Terao C	2019-10-17	Nat Commun	GWAS of mosaic loss of chromosome Y highlights genetic effects on blood cell differentiation.	Mosaic loss of chromosome Y (Y chromosome dosage)	95,380 Japanese men	NA	9p24.3	KANK1	rs2804301-A	0.24	4E-8		0.027	NR unit decrease	Illumina [9591901] (imputed)	N
589	chr9	603915	603916	rs2804301	31624269	Terao C	2019-10-17	Nat Commun	GWAS of mosaic loss of chromosome Y highlights genetic effects on blood cell differentiation.	Mosaic loss of chromosome Y (Y chromosome dosage)	205,011 men	NA	9p24.3	KANK1	rs2804301-A	0.53	2E-6		0.006	unit increase	NR [NR]	N
589	chr9	607177	607178	rs10975385	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9p24.3		rs10975385-?	NR	2E-12				NR [~ 8900000] (imputed)	N
589	chr9	622522	622523	rs10815355	25187374	Hwang JY	2014-09-03	Diabetes	Genome-wide association meta-analysis identifies novel variants associated with fasting plasma glucose in East Asians.	Fasting plasma glucose	24,740 East Asian ancestry individuals	21,345 East Asian ancestry individuals	9p24.3	KANK1	rs10815355-?	NR	1E-9		0.045	[0.031-0.059] unit increase	Affymetrix, Illumina [up to 2315813] (imputed)	N
589	chr9	634609	634610	rs150433305	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9p24.3	NR	rs150433305-T	0.01742	1E-8	(DDB1)	0.1825	NR unit increase	Illumina [1671387] (imputed)	N
590	chr9	678836	678837	rs12352279	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine - clinic-based	5,175 European ancestry clinic-based cases, 13,972 European ancestry clinic-based controls	NA	9p24.3	intergenic	rs12352279-C	0.07	3E-6		1.25	[1.14-1.37]	Affymetrix, Illumina [~ 2300000] (imputed)	N
590	chr9	680713	680714	rs10815466	31649266	Gallagher CS	2019-10-24	Nat Commun	Genome-wide association and epidemiological analyses reveal common genetic origins between uterine leiomyomata and endometriosis.	Uterine fibroids	20,406 European ancestry cases, 223,918 European ancestry controls	15,068 European ancestry cases, 43,587 European ancestry controls	9p24.3		rs10815466-A	0.1509	2E-12		0.0798	[0.057-0.102] unit increase	Affymetrix, Illumina [8662096] (imputed)	N
590	chr9	681644	681645	rs9408674	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Keratinocyte cancer (MTAG)	at least 18,538 European ancestry cases, at least 340,302 European ancestry controls	NA	9p24.3	RP11-130C19.3	rs9408674-A	NR	2E-7		1.0416667	[1.03-1.06]	Affymetrix [7600000] (imputed)	N
590	chr9	681644	681645	rs9408674	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Basal cell carcinoma	31,787 European ancestry cases, 619,351 European ancestry controls	NA	9p24.3	RP11-130C19.3	rs9408674-A	0.458546	3E-9		1.05	[1.03-1.07]	Affymetrix, Illumina [up to 9061544] (imputed)	N
590	chr9	681861	681862	rs7867194	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Skin cancer	25,928 European ancestry cases, 466,275 European ancestry controls, 154 East Asian ancestry cases, 178,572 East Asian ancestry controls	NA	9p24.3		rs7867194-A	NR	5E-8		0.0526	[0.034-0.071] unit increase	Affymetrix, Illumina [25845421] (imputed)	N
590	chr9	683422	683423	rs73639400	30194396	Rafnar T	2018-09-07	Nat Commun	Variants associating with uterine leiomyoma highlight genetic background shared by various cancers and hormone-related traits.	Uterine fibroids	16,595 European ancestry cases, 523,330 European ancestry controls	NA	9p24.3	KANK1	rs73639400-C	0.14247	3E-12		1.12	[1.09-1.16]	Affymetrix, Illumina [43421991] (imputed)	N
590	chr9	701528	701529	rs13296848	31935283	Du Z	2020-01-01	Blood Adv	A meta-analysis of genome-wide association studies of multiple myeloma among men and women of African ancestry.	Multiple myeloma	1,813 African American and African ancestry cases, 8,871 African American and African ancestry controls	NA	9p24.3	NR	rs13296848-C	0.29	3E-7		1.25	[1.15-1.36]	Illumina [12683648] (imputed)	N
590	chr9	712765	712766	rs3824420	23263489	Huyghe JR	2012-12-23	Nat Genet	Exome array analysis identifies new loci and low-frequency variants influencing insulin processing and secretion.	Proinsulin levels (early-phase conversion)	up to 8,229 Finnish ancestry non-diabetic individuals	NA	9p24.3	KANK1	rs3824420-A	0.029	2E-9		0.107	[0.072-0.142] unit increase	Illumina [242071]	N
590	chr9	753647	753648	rs60191654	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	NA	9p24.3	KANK1	rs60191654-A	0.8118	6E-10		0.2382	[0.16-0.31] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
590	chr9	761622	761623	rs10815621	29603369	Naito T	2018-03-30	J Gastroenterol Hepatol	Clinical and genetic risk factors for decreased bone mineral density in Japanese patients with inflammatory bowel disease.	Bone mineral density (femoral neck) in inflammatory bowel disease	254 Japanese ancestry cases	NA	9p24.3	KANK1	rs10815621-T	NR	5E-6		0.402	[NR] unit increase	Affymetrix [4384682] (imputed)	N
591	chr9	789498	789499	rs12000567	24839885	Benke KS	2014-02-19	J Am Acad Child Adolesc Psychiatry	A genome-wide association meta-analysis of preschool internalizing problems.	Preschool internalizing problems	3,121 European ancestry individuals, 1,475 children from 1,031 families	NA	9p24.3	NR	rs12000567-A	0.0165	8E-6		0.63	[0.35-0.91] unit increase	Affymetrix, Illumina [2403520] (imputed)	N
591	chr9	801570	801571	rs10815717	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Uterine fibroids	21,024 European ancestry cases, 237,694 European ancestry controls, 14,475 East Asian ancestry cases, 65,733 East Asian ancestry controls	NA	9p24.3		rs10815717-A	NR	7E-18		0.0776	[0.06-0.095] unit increase	Affymetrix, Illumina [25795146] (imputed)	N
591	chr9	804230	804231	rs7030354	30194396	Rafnar T	2018-09-07	Nat Commun	Variants associating with uterine leiomyoma highlight genetic background shared by various cancers and hormone-related traits.	Uterine fibroids	16,595 European ancestry cases, 523,330 European ancestry controls	NA	9p24.3	DMRT1	rs7030354-T	0.40694	4E-18		1.11	[1.09-1.14]	Affymetrix, Illumina [43421991] (imputed)	N
591	chr9	804435	804436	rs4742419	32579418	Maukonen M	2020-06-24	J Biol Rhythms	Genetic Associations of Chronotype in the Finnish General Population.	Chronotype (sMEQ score)	7,436 Finnish ancestry individuals	NA	9p24.3	LOC105375949	rs4742419-T	NR	2E-6		0.339957	[0.2-0.48] unit increase	Illumina [5842835] (imputed)	N
591	chr9	804885	804886	rs10976689	31649266	Gallagher CS	2019-10-24	Nat Commun	Genome-wide association and epidemiological analyses reveal common genetic origins between uterine leiomyomata and endometriosis.	Uterine fibroids and heavy menstrual bleeding	3,409 European ancestry cases, 199,171 European ancestry controls	NA	9p24.3	NR	rs10976689-?	0.4	4E-6		1.1111112	[1.06-1.16]	Affymetrix [10308721] (imputed)	N
591	chr9	804885	804886	rs10976689	31649266	Gallagher CS	2019-10-24	Nat Commun	Genome-wide association and epidemiological analyses reveal common genetic origins between uterine leiomyomata and endometriosis.	Uterine fibroids	20,406 European ancestry cases, 223,918 European ancestry controls	15,068 European ancestry cases, 43,587 European ancestry controls	9p24.3	ANKRD15	rs10976689-A	0.6	2E-13		1.06	[1.05-1.08]	Affymetrix, Illumina [8662096] (imputed)	N
591	chr9	804885	804886	rs10976689	31649266	Gallagher CS	2019-10-24	Nat Commun	Genome-wide association and epidemiological analyses reveal common genetic origins between uterine leiomyomata and endometriosis.	Uterine fibroids	20,406 European ancestry cases, 223,918 European ancestry controls	15,068 European ancestry cases, 43,587 European ancestry controls	9p24.3		rs10976689-A	0.598	2E-13		0.0608	[0.045-0.077] unit decrease	Affymetrix, Illumina [8662096] (imputed)	N
591	chr9	805426	805427	rs1812264	31249589	Edwards TL	2019-06-12	Front Genet	A Trans-Ethnic Genome-Wide Association Study of Uterine Fibroids.	Uterine fibroids	8,168 European ancestry cases, 65,134 European ancestry controls, 1,278 African ancestry cases, 1,914 African ancestry  controls	12,111 European ancestry cases, 138,477 European ancestry controls, 247 African ancestry cases, 713 African ancestry controls	9p24.3	LOC105375949	rs1812264-G	0.39	1E-18		1.098901	[1.08-1.12]	Affymetrix, Illumina [NR] (imputed)	N
591	chr9	813297	813298	rs111484500	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	9p24.3	intergenic	rs111484500-G	NR	7E-7	(AA)			Illumina [up to 11995908] (imputed)	N
591	chr9	813297	813298	rs111484500	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	9p24.3	intergenic	rs111484500-G	NR	7E-7				Illumina [up to 11995908] (imputed)	N
591	chr9	841151	841152	rs912062	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	9p24.3	DMRT1	rs912062-C	0.161	3E-6	(Diet carbohydrate )	0.03	[NR] g/d increase	Illumina [899892]	N
591	chr9	845515	845516	rs7040024	28604732	Wang Z	2017-06-12	Nat Genet	Meta-analysis of five genome-wide association studies identifies multiple new loci associated with testicular germ cell tumor.	Testicular germ cell tumor	3,558 European ancestry cases, 13,970 European ancestry controls	NA	9p24.3	DMRT1	rs7040024-C	0.26	1E-32		1.4925373	[1.41-1.61]	Illumina [9210350] (imputed)	N
591	chr9	845515	845516	rs7040024	28604728	Litchfield K	2017-06-12	Nat Genet	Identification of 19 new risk loci and potential regulatory mechanisms influencing susceptibility to testicular germ cell tumor.	Testicular germ cell tumor	5,518 European ancestry cases, 19,055 European ancestry controls	1,801 European ancestry cases, 4,027 European ancestry controls	9p24.3	DMRT1	rs7040024-A	0.77	2E-45		1.53	[1.47-1.59]	Illumina [at least 371504] (imputed)	N
591	chr9	845515	845516	rs7040024	21551455	Kanetsky PA	2011-05-06	Hum Mol Genet	A second independent locus within DMRT1 is associated with testicular germ cell tumor susceptibility.	Testicular cancer	349 European ancestry cases, 919 European ancestry controls	439 European ancestry cases, 960 European ancestry controls	9p24.3	DMRT1	rs7040024-A	NR	1E-11		1.7	[1.46-1.99]	Affymetrix [609482]	N
591	chr9	861219	861220	rs7863616	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Testicular cancer	713 European ancestry cases, 359,825 European ancestry controls	NA	9p24.3		rs7863616-C	NR	1E-14		1.5819707	NR	Affymetrix [7846216] (imputed)	N
591	chr9	863634	863635	rs755383	28604732	Wang Z	2017-06-12	Nat Genet	Meta-analysis of five genome-wide association studies identifies multiple new loci associated with testicular germ cell tumor.	Testicular germ cell tumor	3,558 European ancestry cases, 13,970 European ancestry controls	NA	9p24.3	DMRT1	rs755383-T	0.61	7E-41		1.49	1.41-1.58	Illumina [9210350] (imputed)	N
591	chr9	863634	863635	rs755383	23666240	Ruark E	2013-05-12	Nat Genet	Identification of nine new susceptibility loci for testicular cancer, including variants near DAZL and PRDM14.	Testicular germ cell tumor	986 European ancestry cases, 4,946 European ancestry controls	1,064 European ancestry cases, 10,082 European ancestry controls	9p24.3	DMRT1	rs755383-T	0.63	2E-26		1.38	[1.25-1.52]	Illumina [307291]	N
591	chr9	863634	863635	rs755383	23666239	Chung CC	2013-05-12	Nat Genet	Meta-analysis identifies four new loci associated with testicular germ cell tumor.	Testicular germ cell tumor	582 European ancestry male cases, 1,056 European ancestry male controls	3,560 European ancestry male cases, 8,510 European ancestry male controls	9p24.3	DMRT1	rs755383-C	NR	4E-7		1.5152	[1.3-1.79]	Illumina [NR]	N
591	chr9	863634	863635	rs755383	21551455	Kanetsky PA	2011-05-06	Hum Mol Genet	A second independent locus within DMRT1 is associated with testicular germ cell tumor susceptibility.	Testicular cancer	349 European ancestry cases, 919 European ancestry controls	439 European ancestry cases, 960 European ancestry controls	9p24.3	DMRT1	rs755383-T	NR	9E-10		1.5	[1.32-1.71]	Affymetrix [609482]	N
591	chr9	863634	863635	rs755383	20543847	Turnbull C	2010-06-13	Nat Genet	Variants near DMRT1, TERT and ATF7IP are associated with testicular germ cell cancer.	Testicular germ cell cancer	979 European ancestry cases, 4,947 European ancestry controls	664 European ancestry cases, 3,456 European ancestry controls	9p24.3	DMRT1	rs755383-T	0.62	1E-23		1.37	[1.21-1.55]	Illumina [298782]	N
591	chr9	871234	871235	rs60085143	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Medial orbital frontal cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	9p24.3	DMRT1	rs60085143-?		9E-6				Illumina [4322238] (imputed)	N
591	chr9	878562	878563	rs55873183	28604732	Wang Z	2017-06-12	Nat Genet	Meta-analysis of five genome-wide association studies identifies multiple new loci associated with testicular germ cell tumor.	Testicular germ cell tumor	3,558 European ancestry cases, 13,970 European ancestry controls	NA	9p24.3	DMRT1	rs55873183-G	0.07	2E-23		1.89	1.67-2.14	Illumina [9210350] (imputed)	N
591	chr9	880776	880777	rs10733547	27723758	Bronson PG	2016-10-10	Nat Genet	Common variants at PVT1, ATG13-AMBRA1, AHI1 and CLEC16A are associated with selective IgA deficiency.	Selective IgA deficiency	1,635 European ancestry cases, 4,852 European ancestry controls	NA	9p24.3	DRMT1	rs10733547-C		3E-6		0.77	[NR]	Illumina [up to 9464381] (imputed)	N
591	chr9	903460	903461	rs4740965	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	9p24.3	NR	rs4740965-A	0.7668	5E-18		0.002325	[0.0018-0.0029] unit decrease	Affymetrix [NR] (imputed)	N
591	chr9	904077	904078	rs7856502	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	9p24.3		rs7856502-T	NR	5E-14		0.0196	[0.015-0.025] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
592	chr9	917666	917667	rs2370220	30972912	Wei L	2019-04-10	J Viral Hepat	Genetic variation in FCER1A predicts peginterferon alfa-2a-induced hepatitis B surface antigen clearance in East Asian patients with chronic hepatitis B.	Peginterferon alfa-2a treatment response in chronic hepatitis B infection	up to 1,108 East Asian cases, up to 465 European ancestry cases, up to 63 cases	NA	9p24.3	DMRT1	rs2370220-?		8E-6	(endpoint 5, dominant)	1.75	[NR]	Illumina [> 750000]	N
592	chr9	955793	955794	rs364477	23377640	GENDEP Investigators	2013-02-01	Am J Psychiatry	Common genetic variation and antidepressant efficacy in major depressive disorder: a meta-analysis of three genome-wide pharmacogenetic studies.	Major depressive disorder	Up to 2,256 European ancestry cases	NA	9p24.3	DMRT3, DMRT1	rs364477-C	0.2154931	4E-6	(remission - SSRI treated - 12 weeks)	1.6925	[1.47-1.92]	Affymetrix, Illumina [1200000] (imputed)	N
592	chr9	964079	964080	rs550637604	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large LDL	115,082 European ancestry individuals	NA	9p24.3		rs550637604-T	0.998734	2E-8		0.333958	[0.22-0.45] unit decrease	NR [11722792] (imputed)	N
592	chr9	964079	964080	rs550637604	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in LDL	115,082 European ancestry individuals	NA	9p24.3		rs550637604-T	0.998734	3E-8		0.334747	[0.22-0.45] unit decrease	NR [11722792] (imputed)	N
592	chr9	964079	964080	rs550637604	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small LDL	115,082 European ancestry individuals	NA	9p24.3		rs550637604-T	0.998734	4E-8		0.33063	[0.21-0.45] unit decrease	NR [11722792] (imputed)	N
592	chr9	964079	964080	rs550637604	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium LDL	115,082 European ancestry individuals	NA	9p24.3		rs550637604-T	0.998734	2E-8		0.3374	[0.22-0.46] unit decrease	NR [11722792] (imputed)	N
592	chr9	964079	964080	rs550637604	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in LDL	115,082 European ancestry individuals	NA	9p24.3		rs550637604-T	0.998734	2E-8		0.335642	[0.22-0.45] unit decrease	NR [11722792] (imputed)	N
592	chr9	964079	964080	rs550637604	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	LDL cholesterol levels	115,082 European ancestry individuals	NA	9p24.3		rs550637604-T	0.998734	3E-8		0.332911	[0.22-0.45] unit decrease	NR [11722792] (imputed)	N
592	chr9	964079	964080	rs550637604	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	9p24.3		rs550637604-T	0.998734	3E-8		0.334629	[0.22-0.45] unit decrease	NR [11722792] (imputed)	N
592	chr9	964079	964080	rs550637604	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large LDL	115,082 European ancestry individuals	NA	9p24.3		rs550637604-T	0.998734	2E-8		0.336087	[0.22-0.45] unit decrease	NR [11722792] (imputed)	N
592	chr9	964079	964080	rs550637604	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in LDL	115,082 European ancestry individuals	NA	9p24.3		rs550637604-T	0.998734	4E-8		0.331254	[0.21-0.45] unit decrease	NR [11722792] (imputed)	N
592	chr9	964079	964080	rs550637604	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large LDL	115,082 European ancestry individuals	NA	9p24.3		rs550637604-T	0.998734	2E-8		0.332735	[0.22-0.45] unit decrease	NR [11722792] (imputed)	N
592	chr9	975111	975112	rs279910	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	9p24.3		rs279910-G	0.31	4E-16		8.14	z score increase	Affymetrix [9061022] (imputed)	N
592	chr9	975111	975112	rs279910	26242244	Ma Y	2015-08-05	Sci Rep	Association of chromosome 5q21.3 polymorphisms with the exploratory eye movement dysfunction in schizophrenia.	Exploratory eye movement dysfunction in schizophrenia (responsive search score)	128 Han Chinese ancestry cases	NA	9p24.3	NR	rs279910-?	NR	3E-6		1.571	[0.94-2.2] unit decrease	Illumina [498648]	N
592	chr9	977311	977312	rs148355218	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	9p24.3		rs148355218-?	NR	2E-8				NR [9705931] (imputed)	N
592	chr9	981964	981965	rs4141755	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	9p24.3		rs4141755-C	0.26	1E-9		6.09	z score increase	Affymetrix [9061022] (imputed)	N
592	chr9	981964	981965	rs4141755	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	9p24.3	NR	rs4141755-C	0.2534	1E-10				NR [9056863] (imputed)	N
592	chr9	985089	985090	rs16926977	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	9p24.3		rs16926977-C	0.23	8E-15		7.76	z score increase	Affymetrix [9061022] (imputed)	N
592	chr9	989867	989868	rs75785779	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota (alpha diversity)	858 Metropolitan French ancestry individuals	NA	9p24.3	NR	rs75785779-?	NR	6E-6	(ACE metric)	1.00897	[0.57-1.44] unit increase	Illumina [5293637] (imputed)	N
592	chr9	998868	998869	rs279875	25628645	Tong Y	2015-01-13	Front Genet	Identification of genetic variants or genes that are associated with Homoharringtonine (HHT) response through a genome-wide association study in human lymphoblastoid cell lines (LCLs).	Response to Homoharringtonine (cytotoxicity)	93 African American ancestry lymphoblastoid cell lines, 91 European ancestry lymphoblastoid cell lines, 94 Han Chinese ancestry lymphoblastoid cell lines	NA	9p24.3	DMRT3	rs279875-?		7E-7				Affymetrix, Illumina [6750581] (imputed)	N
592	chr9	1011119	1011120	rs79128372	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 1 levels	252 European ancestry individuals	NA	9p24.3		rs79128372-C	NR	3E-6		17.222	[10.19-24.25] unit decrease	Illumina [NR] (imputed)	N
592	chr9	1032566	1032567	rs1016565	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	9p24.3	DMRT2	rs1016565-A	0.421	2E-8		1.04	[1.02-1.05]	Affymetrix, Illumina [11800000] (imputed)	N
592	chr9	1033353	1033354	rs2175055	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	9p24.3		rs2175055-C	0.691745	3E-8		0.0237816	[0.015-0.032] unit increase	NR [11722792] (imputed)	N
592	chr9	1033772	1033773	rs1567353	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	9p24.3		rs1567353-G	NR	7E-10		0.0403	[0.028-0.053] unit increase	Affymetrix, Illumina [25845091] (imputed)	N
592	chr9	1033772	1033773	rs1567353	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	9p24.3	NR	rs1567353-G	0.3612	7E-12		0.0278	[0.02-0.036] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
592	chr9	1033772	1033773	rs1567353	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	9p24.3	DMRT2	rs1567353-C	0.692355	3E-12		0.015087	[0.011-0.019] unit decrease	Affymetrix [NR] (imputed)	N
592	chr9	1033772	1033773	rs1567353	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	9p24.3	DMRT2	rs1567353-C	0.692485	5E-8		0.0113421	[0.0073-0.0154] unit increase	Affymetrix [NR] (imputed)	N
592	chr9	1033772	1033773	rs1567353	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	9p24.3	DMRT2	rs1567353-?	NR	9E-9		0.0164	[0.011-0.021] unit increase	Affymetrix [5701386] (imputed)	N
592	chr9	1033772	1033773	rs1567353	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	9p24.3	NR	rs1567353-C	0.692353	7E-18		0.00793932	[0.0062-0.0097] unit increase	Affymetrix [16582909] (imputed)	N
592	chr9	1033772	1033773	rs1567353	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	9p24.3	NR	rs1567353-C	0.692873	5E-9		0.00735198	[0.0049-0.0098] unit increase	Affymetrix [16582621] (imputed)	N
592	chr9	1033772	1033773	rs1567353	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	9p24.3	NR	rs1567353-C	0.692353	3E-11		0.00719488	[0.0052-0.0092] unit increase	Affymetrix [16582965] (imputed)	N
592	chr9	1033772	1033773	rs1567353	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	9p24.3	NR	rs1567353-C	0.692873	3E-6		0.00643093	[0.0038-0.0091] unit increase	Affymetrix [16582614] (imputed)	N
592	chr9	1037117	1037118	rs868655	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	9p24.3	NR	rs868655-C	0.691635	9E-12		0.00889621	[0.0063-0.0115] unit increase	Affymetrix [16585854] (imputed)	N
592	chr9	1037117	1037118	rs868655	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	9p24.3	NR	rs868655-C	0.691635	2E-7		0.00831385	[0.0053-0.0113] unit increase	Affymetrix [16585866] (imputed)	N
592	chr9	1039938	1039939	rs756145	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	9p24.3	NR	rs756145-G	0.6907	6E-9		0.0286	[0.019-0.038] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
593	chr9	1053909	1053910	rs2275516	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	9p24.3	DMRT2	rs2275516-T	0.17538	2E-9		0.017529236	[0.012-0.023] unit increase	Affymetrix [93095623] (imputed)	N
593	chr9	1053909	1053910	rs2275516	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	9p24.3	DMRT2	rs2275516-T	0.17538	3E-10		0.018442413	[0.013-0.024] unit increase	Affymetrix [93095623] (imputed)	N
593	chr9	1056100	1056101	rs7854435	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip	15 Asian ancestry cases, 13 European ancestry cases, 15 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	9p24.3	NR	rs7854435-?	NR	2E-6		3.03	[2.36-3.87]	Illumina [539000] (imputed)	N
593	chr9	1056958	1056959	rs17641078	18821565	Lasky-Su J	2008-12-05	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association scan of quantitative traits for attention deficit hyperactivity disorder identifies novel associations and confirms candidate gene associations.	Hyperactive-impulsive symptoms	930 European ancestry trios	NA	9p24.3	DMRT2	rs17641078-?	NR	5E-6	(binary)			Perlegen [429981]	N
593	chr9	1076639	1076640	rs13284938	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	9p24.3	DMRT2, DMRT3, DMRT1	rs13284938-A	NR	4E-6	(sleep offset, weekdays)	0.2755	[0.16-0.39] unit increase	Affymetrix [7141204] (imputed)	N
593	chr9	1077148	1077149	rs10959228	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 9, facial height related to vertical position of nasion)	2,187 European ancestry individuals	NA	9p24.3	NR	rs10959228-A	0.3526	1E-6		0.1567	[0.094-0.219] unit increase	Illumina [10677593] (imputed)	N
593	chr9	1081510	1081511	rs16928733	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9p24.3	NR	rs16928733-G	0.01045	3E-8	(AMBP)	0.04959	NR unit increase	Illumina [1671387] (imputed)	N
593	chr9	1103622	1103623	rs1995804	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	9p24.3	NR	rs1995804-A	0.1778	8E-15				NR [9056863] (imputed)	N
593	chr9	1106092	1106093	rs10809266	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Nose size	67,023 European ancestry individuals	NA	9p24.3	DMRT2, SMARCA2	rs10809266-?	NR	1E-9		0.027	[0.018-0.036] unit increase	Illumina [12039491] (imputed)	N
593	chr9	1106543	1106544	rs4452856	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	9p24.3	RP11-341G2.3	rs4452856-A	NR	1E-12		0.0309569	[0.022-0.039] unit increase	Affymetrix [323858] (imputed)	N
593	chr9	1106543	1106544	rs4452856	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	9p24.3		rs4452856-?	NR	2E-8				NR [~ 8900000] (imputed)	N
593	chr9	1111388	1111389	rs10733214	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	9p24.3	RP11-341G2.3	rs10733214-A	NR	6E-9		0.0231407	[0.015-0.031] unit increase	Affymetrix [323123] (imputed)	N
593	chr9	1119285	1119286	rs4741091	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	9p24.3	RP11-341G2.3	rs4741091-C	NR	5E-9		0.019888	[0.013-0.027] unit increase	Affymetrix [323858] (imputed)	N
593	chr9	1121084	1121085	rs10959548	29724592	Pottier C	2018-04-30	Lancet Neurol	Potential genetic modifiers of disease risk and age at onset in patients with frontotemporal lobar degeneration and GRN mutations: a genome-wide association study.	Language impairment in frontotemporal lobe dementia	169 European ancestry cases, 213 European ancestry controls	NA	9p24.3	DMRT2	rs10959548-T	0.3	6E-6		2.12	[1.79-2.45]	Illumina [7033776] (imputed)	N
593	chr9	1121352	1121353	rs7861975	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Monobrow	69,284 European ancestry individuals	NA	9p24.3	DMRT2, SMARCA2	rs7861975-?	NR	4E-62		0.064	[0.056-0.071] unit increase	Illumina [12039491] (imputed)	N
593	chr9	1128640	1128641	rs7859005	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 57)	4,680 European ancestry individuals	3,566 European ancestry individuals	9p24.3		rs7859005-G	0.401102464	3E-10				Illumina [7417619] (imputed)	N
593	chr9	1169787	1169788	rs2152849	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	9p24.3	RPS27AP14	rs2152849-G	NR	6E-9		0.0205016	[0.014-0.027] unit increase	Affymetrix [323858] (imputed)	N
593	chr9	1171771	1171772	rs143668283	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling fed-up	374,971 European ancestry individuals	NA	9p24.3	NR	rs143668283-A	0.00591126	1E-8		5.74	z score decrease	NR [10847151] (imputed)	N
594	chr9	1198531	1198532	rs186838937	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	9p24.3	RPS27AP14	rs186838937-C	0.0142	5E-6		0.1622	[0.093-0.232] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
594	chr9	1198531	1198532	rs186838937	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	9p24.3	RPS27AP14	rs186838937-C	0.0142	5E-6		0.1622	[0.093-0.232] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
594	chr9	1201155	1201156	rs12342106	28886342	Ng M	2017-09-07	Am J Hum Genet	A Genome-wide Association Study of Dupuytren Disease Reveals 17 Additional Variants Implicated in Fibrosis.	Dupuytren's disease	3,871 European ancestry cases, 4,686 European ancestry controls	4,041 European and unknown ancestry cases, 8,251 European and unknown ancestry controls	9p24.3	LINC01230, DMRT1, DMRT2, DMRT3	rs12342106-A	0.308	4E-26		1.29	[1.23-1.352]	Illumina [238825]	N
594	chr9	1202370	1202371	rs10809650	21732829	Dolmans GH	2011-07-06	N Engl J Med	Wnt signaling and Dupuytren's disease.	Dupuytren's disease	856 European ancestry cases, 2,836 European ancestry controls	1,298 European ancestry cases, 7,136 European ancestry controls	9p24.3	DMRT2, RP11-341G2.1	rs10809650-?	0.76	6E-9		1.25	[1.14-1.35]	Illumina [234939]	N
594	chr9	1262701	1262702	rs7039247	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Stem cell factor levels	8,290 Finnish ancestry individuals	NA	9p24.3	NR	rs7039247-G		2E-6		0.0806	[0.048-0.114] SD units decrease	NR [10700000] (imputed)	N
594	chr9	1304814	1304815	rs7864098	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	9p24.3	NR	rs7864098-?	NR	3E-9				Affymetrix [NR]	N
595	chr9	1439566	1439567	rs658817	34512620	Matzaraki V	2021-08-26	Front Immunol	Inflammatory Protein Profiles in Plasma of Candidaemia Patients and the Contribution of Host Genetics to Their Variability.	Candida albicans stimulated IL-8 levels	378 European ancestry individuals	NA	9p24.3		rs658817-?	NR	7E-9		5.79	z-score increase	Illumina [NR] (imputed)	N
596	chr9	1450273	1450274	rs7037453	34518958	Sanders AR	2021-09-13	Arch Sex Behav	Genome-Wide Linkage and Association Study of Childhood Gender Nonconformity in Males.	Childhood gender nonconformity	409 European ancestry concordant male sibling pairs	NA	9p24.3		rs7037453-C	0.774	1E-5		0.059	[0.034-0.084] unit decrease	Affymetrix [6030650] (imputed)	N
596	chr9	1456796	1456797	rs1412259	23006423	Niu N	2012-09-24	BMC Cancer	Genetic association with overall survival of taxane-treated lung cancer patients - a genome-wide association study in human lymphoblastoid cell lines followed by a clinical association study.	Response to taxane treatment (docetaxel)	96 African American lymphoblastoid cell lines, 96 European ancestry lymphoblastoid cell lines, 96 Han Chinese ancestry lymphoblastoid cell lines	NA	9p24.3	intergenic	rs1412259-?	NR	4E-6				Affymetrix, Illumina [~ 1300000]	N
596	chr9	1459754	1459755	rs10122840	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	9p24.3	DMRT3	rs10122840-?	NR	9E-6	(glycerol)	3.0241127	[1.69-4.36] unit decrease	Affymetrix [at least 2500000] (imputed)	N
596	chr9	1501468	1501469	rs62534837	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9p24.3	NR	rs62534837-G	0.04007	6E-10	(CORO1A)	0.05405	NR unit increase	Illumina [1671387] (imputed)	N
596	chr9	1502481	1502484	rs946512008	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9p24.3	NR	rs946512008-G	0.02265	2E-8	(CORO1A)	0.0621	NR unit increase	Illumina [1671387] (imputed)	N
596	chr9	1540008	1540009	rs12551048	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	9p24.3	NR	rs12551048-T	0.269384	3E-8		0.0440872	[0.029-0.06] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
596	chr9	1555834	1555835	rs771924	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FVC)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		9p24.3	DMRT2, SMARCA2	rs771924-A	0.42	7E-9	(EA)	18.4	[12.17-24.63] ml decrease	Affymetrix, Illumina [10900000] (imputed)	N
596	chr9	1555834	1555835	rs771924	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FEV1)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		9p24.3		rs771924-?	NR	3E-7	(EA)	14.4	[8.93-19.87] unit decrease	Affymetrix, Illumina [10900000] (imputed)	N
596	chr9	1568940	1568941	rs771662	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	9p24.3	DMRT2/SMARCA2	rs771662-T	0.3493	1E-10		0.0158	[0.011-0.021] unit decrease	Affymetrix [19819130] (imputed)	N
596	chr9	1568940	1568941	rs771662	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	9p24.3	DMRT2/SMARCA2	rs771662-T	0.3493	4E-11		0.0161	[0.011-0.021] unit decrease	Affymetrix [19819130] (imputed)	N
597	chr9	1574876	1574877	rs9407640	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FVC)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		9p24.3	DMRT2, SMARCA2	rs9407640-C	0.45	1E-7	(EA)	18.7	[11.76-25.64] unit decrease	Affymetrix, Illumina [10900000] (imputed)	N
597	chr9	1574876	1574877	rs9407640	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FVC)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		9p24.3	DMRT2, SMARCA2	rs9407640-C	0.42	3E-8		16.82	[10.88-22.76] ml decrease	Affymetrix, Illumina [10900000] (imputed)	N
597	chr9	1574876	1574877	rs9407640	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FEV1)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		9p24.3	DMRT2, SMARCA2	rs9407640-C	0.45	5E-6	(EA)	14.18	[8.08-20.28] unit decrease	Affymetrix, Illumina [10900000] (imputed)	N
597	chr9	1574876	1574877	rs9407640	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FEV1)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		9p24.3	DMRT2, SMARCA2	rs9407640-C	0.41	5E-8		14.48	[9.29-19.67] ml decrease	Affymetrix, Illumina [10900000] (imputed)	N
597	chr9	1595159	1595160	rs10962181	25335168	Hashimoto R	2014-10-21	Transl Psychiatry	Common variants at 1p36 are associated with superior frontal gyrus volume.	Superior frontal gyrus grey matter volume	158 Japanese ancestry schizophrenia cases, 378 Japanese ancestry healthy controls	NA	9p24.3	SMARCA2	rs10962181-G	0.09	3E-6	(Right superior frontal gyrus)	1328.0	[NR] unit increase	Affymetrix [517946]	N
597	chr9	1602448	1602449	rs702155	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	9p24.3		rs702155-?	NR	2E-16				NR [~ 8900000] (imputed)	N
597	chr9	1614226	1614227	rs115658936	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	9p24.3	NR	rs115658936-?	NR	4E-8				Illumina [7760689] (imputed)	N
597	chr9	1642997	1642998	rs1853413	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	9p24.3		rs1853413-G	NR	1E-8		0.0122	[0.0081-0.0163] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
597	chr9	1667813	1667814	rs4741571	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	9p24.3		rs4741571-A	0.6723	8E-12		0.0102	[0.0073-0.0131] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
597	chr9	1670257	1670258	rs1323230	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	9p24.3	NR	rs1323230-?	NR	1E-9				Affymetrix [NR]	N
597	chr9	1680071	1680072	rs1323237	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Superior temporal sulcus banks volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	9p24.3	NR	rs1323237-?		5E-6				Illumina [4322238] (imputed)	N
598	chr9	1709381	1709382	rs480263	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	9p24.3		rs480263-?	NR	7E-11				NR [~ 8900000] (imputed)	N
598	chr9	1721384	1721385	rs2616830	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	9p24.3	NR	rs2616830-?		3E-14		0.0164651	[0.012-0.021] unit increase	Affymetrix [19400418] (imputed)	N
598	chr9	1721477	1721478	rs1478110	25201988	Rietveld CA	2014-09-08	Proc Natl Acad Sci U S A	Common genetic variants associated with cognitive performance identified using the proxy-phenotype method.	Educational attainment	106,736 European ancestry individuals	NA	9p24.3	intergenic	rs1478110-T	0.48	4E-7		0.023	[NR] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
598	chr9	1734455	1734456	rs771061	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	9p24.3	RP11-443B9.1	rs771061-G	0.4842	2E-13		0.014813193	[0.011-0.019] unit increase	Affymetrix [up to 18485882] (imputed)	N
598	chr9	1740697	1740698	rs6475130	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	9p24.3	Intergenic	rs6475130-T	0.5579	1E-16	(MTAG)	0.0137	[0.01-0.017] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
598	chr9	1748794	1748795	rs4741594	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	9p24.3	ENSG00000224092	rs4741594-?	NR	1E-15		0.017274031	[0.013-0.021] unit increase	NR [7306098]	N
598	chr9	1751549	1751550	rs9792504	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	9p24.3		rs9792504-A	0.694	8E-11		53.247917	z score increase	NR [6814003]	N
598	chr9	1757273	1757274	rs7849487	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	9p24.3	NR	rs7849487-T	0.362823	1E-20		0.068637215	[0.054-0.083] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
598	chr9	1757273	1757274	rs7849487	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	9p24.3		rs7849487-T	0.6578	1E-29		0.0167	[0.014-0.02] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
598	chr9	1757273	1757274	rs7849487	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	9p24.3	Intergenic	rs7849487-T	0.6578	7E-27	(MTAG)	0.0148	[0.012-0.018] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
598	chr9	1765097	1765098	rs7032946	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fruit consumption	335,576 European ancestry individuals	NA	9p24.3	intergenic	rs7032946-?	NR	4E-11		0.0170077	[0.012-0.022] unit decrease	Affymetrix [25921788] (imputed)	N
598	chr9	1787686	1787687	rs11998763	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	9p24.3	NR	rs11998763-A	0.5378	5E-14		0.016806586	NR unit increase	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
598	chr9	1790487	1790488	rs3847223	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	9p24.3	RP11-443B9.1	rs3847223-T	0.4777	2E-17		0.017148413	[0.013-0.021] unit increase	Affymetrix [up to 18485882] (imputed)	N
598	chr9	1790684	1790685	rs3847225	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	9p24.3	RP11-443B9.1	rs3847225-C	0.394	8E-11		0.013469717	[0.0094-0.0175] unit increase	Affymetrix [up to 18485882] (imputed)	N
598	chr9	1790684	1790685	rs3847225	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	9p24.3		rs3847225-?	NR	2E-18				NR [~ 8900000] (imputed)	N
598	chr9	1790684	1790685	rs3847225	27046643	Davies G	2016-04-05	Mol Psychiatry	Genome-wide association study of cognitive functions and educational attainment in UK Biobank (N=112 151).	Educational attainment	111,114 European ancestry individuals	NA	9p24.3	Intergenic	rs3847225-?	NR	4E-10		0.0273355	[NR] unit increase	Affymetrix [~ 17300000] (imputed)	N
598	chr9	1792146	1792147	rs2068428	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	9p24.3	RP11-443B9.1	rs2068428-T	0.2391	4E-12		0.016568288	[0.012-0.021] unit increase	Affymetrix [up to 18485882] (imputed)	N
598	chr9	1798804	1798805	rs3847228	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	9p24.3		rs3847228-T	0.406	7E-9		0.0083	[0.0056-0.011] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
598	chr9	1821337	1821338	rs12684930	32157176	Buchwald J	2020-03-10	Mol Psychiatry	Genome-wide association meta-analysis of nicotine metabolism and cigarette consumption measures in smokers of European descent.	Cotinine and 3'-hydroxycotinine levels in current smokers	5,185 European ancestry individuals	NA	9p24.3		rs12684930-C	0.075	2E-8		0.203	[0.13-0.27] unit increase	Illumina [9622178] (imputed)	N
599	chr9	1940936	1940937	rs377310910	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental extreme longevity (95 years and older)	1,339 middle-aged British cases, 40,934 middle-aged British controls	NA	9p24.3	NR	rs377310910-?	NR	2E-7		0.01479	[0.0092-0.0204] unit decrease	Affymetrix [9658292] (imputed)	N
599	chr9	1960628	1960629	rs4483209	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	9p24.3	NR	rs4483209-T	0.47198700000000005	4E-9		0.0173447	[0.011-0.023] unit increase	Affymetrix [16577424] (imputed)	N
600	chr9	1975971	1975972	rs77797991	32790701	Rode M	2020-08-13	PLoS One	Genome-wide association analysis of pulse wave velocity traits provide new insights into the causal relationship between arterial stiffness and blood pressure.	Arterial stiffness (brachial-femoral pulse wave velocity)	3,643 European ancestry individuals	NA	9p24.3	RP11-443B9.1, SMARCA2, RNU2-25P	rs77797991-A	0.01	1E-7		0.176	[0.064-0.288] unit increase	Affymetrix [11342744] (imputed)	N
600	chr9	1995748	1995749	rs10811256	27611488	Almoguera B	2016-09-09	Am J Respir Crit Care Med	Identification of Four Novel Loci in Asthma in European American and African American Populations.	Asthma (childhood onset)	1,181 African American allergic asthma child cases, 498 African American non-allergic asthma child cases, 2,993 African American child controls, 998 European American allergic asthma child cases, 182 European American non-allergic asthma child cases, 4,097 European American child controls.	NA	9p24.3	SMARCA2	rs10811256-?	NR	5E-6		0.198	[0.11-0.28] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
600	chr9	2007877	2007878	rs10738556	32019955	Brcic L	2020-02-04	Sci Rep	AATF and SMARCA2 are associated with thyroid volume in Hashimoto's thyroiditis patients.	Thyroid volume in Hashimoto's thyroiditis	345 European ancestry individuals	NA	9p24.3	SMARCA2	rs10738556-T	0.5	3E-8		0.44	[0.29-0.59] unit decrease	Illumina [6007542] (imputed)	N
600	chr9	2011356	2011357	rs10964391	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	9p24.3	NA	rs10964391-C		3E-16		0.0601569	[0.046-0.075] unit increase	Illumina [13288253] (imputed)	N
600	chr9	2011587	2011588	rs10757112	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	9p24.3	NR	rs10757112-A	0.602547	2E-8		0.00512424	[0.0034-0.0068] unit increase	Affymetrix [16582909] (imputed)	N
600	chr9	2011587	2011588	rs10757112	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	9p24.3	NR	rs10757112-A	0.602547	6E-8		0.00513759	[0.0033-0.007] unit increase	Affymetrix [16582965] (imputed)	N
600	chr9	2083009	2083010	rs10964681	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota relative abundance (bacterial taxa)	up to 858 Metropolitan French ancestry individuals	NA	9p24.3	NR	rs10964681-?	NR	2E-8	(Peptoniphilus)	0.83012	[0.56-1.1] unit increase	Illumina [5293637] (imputed)	N
600	chr9	2083009	2083010	rs10964681	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota relative abundance (bacterial taxa)	up to 858 Metropolitan French ancestry individuals	NA	9p24.3	NR	rs10964681-?	NR	2E-8	(Peptoniphilaceae)	0.83012	[0.56-1.1] unit increase	Illumina [5293637] (imputed)	N
601	chr9	2114023	2114024	rs10511434	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	9p24.3		rs10511434-?	NR	5E-10				NR [~ 8900000] (imputed)	N
601	chr9	2177491	2177492	rs10491697	33002439	Jin G	2020-10-01	Lancet Oncol	Genetic risk, incident gastric cancer, and healthy lifestyle: a meta-analysis of genome-wide association studies and prospective cohort study.	Gastric cancer	10,254 Han Chinese ancestry cases, 10,914 Han Chinese ancestry controls	NA	9p24.3	NR	rs10491697-A	0.62	5E-6		1.11	NR	Affymetrix, Illumina [6957974] (imputed)	N
601	chr9	2180148	2180149	rs1547635	31497858	Dumitrescu L	2019-09-01	Brain	Sex differences in the genetic predictors of Alzheimer's pathology.	Neuritic plaque	2,701 European ancestry men	NA	9p24.3	SMARCA2	rs1547635-A	0.125688	2E-6		0.549746	[0.33-0.77] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
601	chr9	2183329	2183330	rs1324201	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	7,894 Sub-Saharan African ancestry individuals	NA	9p24.3		rs1324201-T	0.286116	9E-7		0.0103937	[0.0063-0.0145] unit decrease	Illumina [13900000] (imputed)	N
601	chr9	2194226	2194227	rs4741652	23453885	Smoller JW	2013-02-27	Lancet	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NA	9p24.3	SMARCA2	rs4741652-T	NR	7E-6	(Modelling analysis)	1.07	[1.04-1.12]	NR [1252901] (imputed)	N
601	chr9	2197986	2197987	rs57263785	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (min-P)	26,502 European ancestry individuals	NA	9p24.3	RDH14, NT5C1B-RDH14, NT5C1B	rs57263785-?		6E-13				NR [7428630] (imputed)	N
601	chr9	2197986	2197987	rs57263785	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	9p24.3	ATP1B3, TFDP2	rs57263785-?		1E-8				NR [7428630] (imputed)	N
601	chr9	2197986	2197987	rs57263785	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (min-P)	26,502 European ancestry individuals	NA	9p24.3	LYPD6B	rs57263785-?		2E-12				NR [7428630] (imputed)	N
601	chr9	2197986	2197987	rs57263785	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	9p24.3	SMARCA2	rs57263785-?		2E-8				NR [7428630] (imputed)	N
601	chr9	2201554	2201555	rs11521331	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	9p24.2	NR	rs11521331-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
601	chr9	2203937	2203938	rs6475600	24025145	Chung S	2013-09-11	Breast Cancer Res	A genome-wide association study of chemotherapy-induced alopecia in breast cancer patients.	Adverse response to chemotherapy in breast cancer (alopecia) (cyclophosphamide+doxorubicin+/-5FU)	64 Japanese ancestry cases, 27 Japanese ancestry controls	NA	9p24.2	SMARCA2	rs6475600-C	0.63	2E-6	(Allelic)	7.78	3.25-18.6]	Illumina [555600]	N
602	chr9	2246302	2246303	rs28880977	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9p24.2	NR	rs28880977-T	0.01394	2E-8	(CFL2)	0.09156	NR unit decrease	Illumina [1671387] (imputed)	N
602	chr9	2256091	2256092	rs16938145	24529757	Xie T	2014-01-17	Neurobiol Aging	Genome-wide association study combining pathway analysis for typical sporadic amyotrophic lateral sclerosis in Chinese Han populations.	Amyotrophic lateral sclerosis (sporadic)	250 Han Chinese ancestry cases, 250 Han Chinese ancestry controls	NA	9p24.2	SMARCA2	rs16938145-?		1E-6				Illumina [859311]	N
602	chr9	2277604	2277605	rs148076010	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	9p24.2	RN7SL592P	rs148076010-A	0.961	3E-6		0.0857	[0.05-0.122] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
602	chr9	2277604	2277605	rs148076010	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Trunk fat mass	3,399 whole genome sequenced individuals, 12,838 European ancestry individuals	10,667 European ancestry individuals	9p24.2	RN7SL592P	rs148076010-A	0.9607	4E-7		0.1727	[0.11-0.24] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
602	chr9	2277604	2277605	rs148076010	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body fat mass	3,399 whole genome sequenced individuals, 11,802 European ancestry individuals	10,670 European ancestry individuals	9p24.2	RN7SL592P	rs148076010-A	0.9612	2E-8		0.1816	[0.12-0.25] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
602	chr9	2301691	2301692	rs10965522	31044621	Rimpela JM	2019-05-02	Blood Press	Genome-wide association study of white-coat effect in hypertensive patients.	White coat effect (clinic diastolic blood pressure minus ambulatory diastolic blood pressure)	206 Finnish ancestry individuals	NA	9p24.2	VLDLR	rs10965522-A	0.23	2E-6		2.8	[1.62-3.98] unit increase	Illumina [629414]	N
602	chr9	2328212	2328213	rs1123970	26265036	Parra EJ	2015-08-12	Pharmacogenomics	Genome-wide association study of warfarin maintenance dose in a Brazilian sample.	Warfarin maintenance dose	180 Brazilian ancestry low dose individuals, 187 Brazilian ancestry high dose individuals	798 European ancestry individuals, 1611 Japanese ancestry individuals, 191 African American individuals	9p24.2	NR	rs1123970-T	0.816	4E-6	(conditional on rs749671,CYP2C9*2 and CYP2C9*3, Brazilians)	7.3529406	[NR]	Affymetrix [> 650000] (imputed)	N
602	chr9	2339738	2339739	rs4741674	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	9p24.2		rs4741674-?	NR	1E-10				NR [~ 8900000] (imputed)	N
603	chr9	2400700	2400701	rs10966132	29596498	Charles BA	2018-03-29	PLoS One	Analyses of genome wide association data, cytokines, and gene expression in African-Americans with benign ethnic neutropenia.	Low white blood cell count (conditioned on rs2814778)	592 African American individuals with low white blood cell count, 586 African American individuals with high white blood cell count	NA	9p24.2	intergenic	rs10966132-C	0.6238	2E-6		1.6860563	[1.47-1.90]	Illumina [at least 656747] (imputed)	N
603	chr9	2403908	2403909	rs866991	29596498	Charles BA	2018-03-29	PLoS One	Analyses of genome wide association data, cytokines, and gene expression in African-Americans with benign ethnic neutropenia.	Low white blood cell count (conditioned on rs2814778)	592 African American individuals with low white blood cell count, 586 African American individuals with high white blood cell count	NA	9p24.2	intergenic	rs866991-A	0.6609	4E-7		1.7818959	[1.56-2.00]	Illumina [at least 656747] (imputed)	N
603	chr9	2404562	2404563	rs4741700	29596498	Charles BA	2018-03-29	PLoS One	Analyses of genome wide association data, cytokines, and gene expression in African-Americans with benign ethnic neutropenia.	Low white blood cell count (conditioned on rs2814778)	592 African American individuals with low white blood cell count, 586 African American individuals with high white blood cell count	NA	9p24.2	intergenic	rs4741700-G	0.6606	4E-7		1.7818959	[1.56-2.00]	Illumina [at least 656747] (imputed)	N
603	chr9	2411645	2411646	rs36030485	27890468	van Hulzen KJE	2016-10-18	Biol Psychiatry	Genetic Overlap Between Attention-Deficit/Hyperactivity Disorder and Bipolar Disorder: Evidence From Genome-wide Association Study Meta-analysis.	Bipolar disorder or attention deficit hyperactivity disorder	9,650 European ancestry bipolar disorder cases, 2,950 European ancestry ADHD cases, 1,659 European and unknown ancestry ADHD cases, 16,325 European ancestry controls, 2,942 European and unknown ancestry controls, 2,096 controls	NA	9p24.2	LOC105375956	rs36030485-?	NR	9E-7				Affymetrix, Illumina [NR] (imputed)	N
603	chr9	2426984	2426985	rs7048743	29855537	Hirata T	2018-05-31	Sci Rep	Japanese GWAS identifies variants for bust-size, dysmenorrhea, and menstrual fever that are eQTLs for relevant protein-coding or long non-coding RNAs.	Menstruation quality of life impact (bowel movement)	903 Japanese ancestry female cases, 4,831 Japanese ancestry female controls	921 Japanese ancestry female cases, 4,693 Japanese ancestry female controls	9p24.2	NR	rs7048743-A	0.07340219	3E-6		0.3000387	[0.17-0.43] unit increase	Affymetrix [536506]	N
603	chr9	2432561	2432562	rs10966259	29532581	Hallfors J	2018-03-13	Addict Biol	Genome-wide association study in Finnish twins highlights the connection between nicotine addiction and neurotrophin signaling pathway.	Nicotine dependence symptom count	1,715 Finnish ancestry ever smoker individuals from 739 families	NA	9p24.2	NR	rs10966259-G	0.457	7E-6		0.27	[0.15-0.39] unit decrease	Illumina [9469131] (imputed)	N
603	chr9	2448653	2448654	rs79116212	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	9p24.2	NR	rs79116212-G	NR	5E-7	(GEE model)	0.87308	[0.53-1.21] unit decrease	NR [NR] (imputed)	N
603	chr9	2489727	2489728	rs12686800	28203683	Heit JA	2017-02-16	Thromb Haemost	Identification of unique venous thromboembolism-susceptibility variants in African-Americans.	Venous thromboembolism adjusted for sickle cell variant rs77121243-T	393 African American cases, 4,941 African American controls.	NR	9p24.2	FLJ35024	rs12686800-A	0.2409	4E-6		1.5	[1.263-1.782]	Affymetrix, Illumina [14074516] (imputed)	N
604	chr9	2493750	2493751	rs12216886	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	NA	9p24.2	RP11-125B21.2	rs12216886-T	0.8077	5E-9		0.1292	[0.086-0.173] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
604	chr9	2496479	2496480	rs872256	26969751	Parmar PG	2016-03-11	Circ Cardiovasc Genet	International Genome-Wide Association Study Consortium Identifies Novel Loci Associated With Blood Pressure in Children and Adolescents.	Systolic blood pressure	5,008 European ancestry prepubescent females, 5,082 European ancestry prepubescent males, 4,238 European ancestry pubescent females, 4,185 European ancestry pubescent males, 2,680 European ancestry post-pubescent females, 2,496 European ancestry post-pubescent males	NA	9p24.2	SMARCA2, VLDLR	rs872256-?	NR	9E-9	(Puberty)	0.096	[0.063-0.129] unit increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
604	chr9	2548555	2548556	rs10812227	22780124	Lind PA	2012-07-11	Addict Biol	Genome-wide association study of a quantitative disordered gambling trait.	Gambling	1,312 European ancestry twins from 894 families	NA	9p24.2	VLDLR, FLJ35024	rs10812227-C	.868	5E-6		0.221	[0.13-0.32] unit increase	Illumina [2373249] (imputed)	N
604	chr9	2551653	2551654	rs12237653	22780124	Lind PA	2012-07-11	Addict Biol	Genome-wide association study of a quantitative disordered gambling trait.	Gambling	1,312 European ancestry twins from 894 families	NA	9p24.2	VLDLR, FLJ35024	rs12237653-T	0.868	3E-6		0.225	[0.13-0.32] unit increase	Illumina [2373249] (imputed)	N
604	chr9	2552964	2552965	rs148802107	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in ever smokers	23,223 European ancestry cases,  16,964 European ancestry controls	NA	9p24.2	VLDLR-AS1	rs148802107-T	0.018010521	8E-6		1.3019569	[1.159839669-1.461487992]	Illumina [10439017] (imputed)	N
604	chr9	2565937	2565938	rs17488507	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	9p24.2	KCNV2	rs17488507-?	NR	3E-6	(arginine)	0.1912635	[0.11-0.27] unit increase	Affymetrix [at least 2500000] (imputed)	N
604	chr9	2594235	2594236	rs10967100	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	9p24.2	NR	rs10967100-?	NR	1E-8				Affymetrix [NR]	N
604	chr9	2602278	2602279	rs55860526	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	9p24.2		rs55860526-?	NR	2E-9				NR [~ 8900000] (imputed)	N
604	chr9	2603033	2603034	rs10967131	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	9p24.2		rs10967131-A	NR	2E-8		0.0114	[0.0075-0.0153] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
604	chr9	2603033	2603034	rs10967131	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	9p24.2	RP11-125B21.2	rs10967131-A	0.184752	1E-11		0.019464228	[0.014-0.025] unit increase	Affymetrix [93095623] (imputed)	N
604	chr9	2603033	2603034	rs10967131	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	9p24.2	RP11-125B21.2	rs10967131-A	0.184775	9E-13		0.020496836	[0.015-0.026] unit increase	Affymetrix [93095623] (imputed)	N
604	chr9	2607429	2607430	rs10812332	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	9p24.2	RP11-125B21.2	rs10812332-G	0.18827	2E-10		0.018164633	[0.013-0.024] unit increase	Affymetrix [93095623] (imputed)	N
604	chr9	2609025	2609026	rs62535725	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	9p24.2	RP11-125B21.2	rs62535725-A	0.187186	1E-10		0.018450227	[0.013-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
604	chr9	2609025	2609026	rs62535725	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	9p24.2		rs62535725-?	NR	4E-12				NR [~ 8900000] (imputed)	N
604	chr9	2621144	2621145	rs7043199	26910538	Choi SH	2016-02-24	PLoS Genet	Six Novel Loci Associated with Circulating VEGF Levels Identified by a Meta-analysis of Genome-Wide Association Studies.	Vascular endothelial growth factor levels	9541 European ancestry individuals, 1,115 Cilento (founder/genetic isolated) individuals, 897 Ogliastran (founder/genetic isolated) individuals, 1,759 Val Borbera (founder/genetic isolated) individuals	2,141 European ancestry individuals, 659 Sorbian (founder/genetic isolated) individuals	9p24.2	AS1, VLDLR	rs7043199-A	0.21	4E-14		0.1	[0.075-0.125] unit decrease	Affymetrix, Illumina [6705861] (imputed)	N
605	chr9	2622133	2622134	rs34881325	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein VEGFA	5,366 Icelandic ancestry individuals	NA	9p24.2		rs34881325-T	0.3925	6E-18		0.168432	[0.13-0.21] unit decrease	Illumina [7506463] (imputed)	N
605	chr9	2622133	2622134	rs34881325	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein VEGFA	5,364 Icelandic ancestry individuals	NA	9p24.2		rs34881325-T	0.3925	1E-14		0.14938	[0.11-0.19] unit decrease	Illumina [7506463] (imputed)	N
605	chr9	2622133	2622134	rs34881325	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	9p24.2		rs34881325-T	NR	6E-12		0.0152	[0.011-0.02] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
605	chr9	2622133	2622134	rs34881325	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	9p24.2	VLDLR	rs34881325-T	0.375604	1E-12		0.016613944	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
605	chr9	2622133	2622134	rs34881325	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	9p24.2	VLDLR	rs34881325-T	0.375621	8E-26		0.024549289	[0.02-0.029] unit increase	Affymetrix [93095623] (imputed)	N
605	chr9	2622133	2622134	rs34881325	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	9p24.2	VLDLR	rs34881325-T	0.375607	7E-25		0.024066497	[0.019-0.029] unit increase	Affymetrix [93095623] (imputed)	N
605	chr9	2622133	2622134	rs34881325	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9p24.2	NR	rs34881325-T	0.384587	4E-23				Affymetrix, Illumina [24588908] (imputed)	N
605	chr9	2622133	2622134	rs34881325	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	9p24.2	NR	rs34881325-T	0.379717	5E-24		0.019768	[0.016-0.024] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
605	chr9	2622133	2622134	rs34881325	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	9p24.2	NR	rs34881325-T	0.379428	5E-28		0.021689	[0.018-0.026] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
605	chr9	2622133	2622134	rs34881325	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Vascular endothelial growth factor levels	7,118 Finnish ancestry individuals	NA	9p24.2	NR	rs34881325-C		3E-10	(conditioned on rs2375980)	0.118	SD units increase	NR [10700000] (imputed)	N
605	chr9	2622146	2622155	rs369552432	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	9p24.2		rs369552432-A	NR	3E-10		0.0162	[0.011-0.021] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
605	chr9	2622146	2622155	rs369552432	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	9p24.2		rs369552432-A	NR	8E-12		0.0171	[0.012-0.022] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
605	chr9	2622146	2622155	rs369552432	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	9p24.2		rs369552432-A	NR	8E-19		0.0181	[0.014-0.022] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
605	chr9	2622146	2622155	rs369552432	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	9p24.2	VLDLR	rs369552432-A	0.391265	1E-17		0.020387948	[0.016-0.025] unit increase	Affymetrix [93095623] (imputed)	N
605	chr9	2622146	2622155	rs369552432	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	9p24.2	VLDLR	rs369552432-A	0.3932	2E-11		0.02564572	[0.018-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
605	chr9	2622146	2622155	rs369552432	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	9p24.2	VLDLR	rs369552432-A	0.3932	1E-10		0.02465845	[0.017-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
605	chr9	2622146	2622146	rs555425887	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	9p24.2	NR	rs555425887-D	0.391516	3E-16		0.017785	[0.014-0.022] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
605	chr9	2622277	2622278	rs2219143	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	9p24.2		rs2219143-A	NR	1E-10		0.0147	[0.01-0.019] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
605	chr9	2622277	2622278	rs2219143	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	9p24.2	VLDLR	rs2219143-A	0.393031	1E-19		0.021107303	[0.017-0.026] unit increase	Affymetrix [93095623] (imputed)	N
605	chr9	2622277	2622278	rs2219143	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	9p24.2	VLDLR	rs2219143-A	0.393298	2E-17		0.019915363	[0.015-0.025] unit increase	Affymetrix [93095623] (imputed)	N
605	chr9	2622277	2622278	rs2219143	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	9p24.2	VLDLR	rs2219143-A	0.393317	3E-22		0.022753648	[0.018-0.027] unit increase	Affymetrix [93095623] (imputed)	N
605	chr9	2622277	2622278	rs2219143	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	9p24.2	VLDLR	rs2219143-A	0.393092	4E-19		0.020828959	[0.016-0.025] unit increase	Affymetrix [93095623] (imputed)	N
605	chr9	2622277	2622278	rs2219143	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	9p24.2	VLDLR	rs2219143-A	0.393026	5E-11		0.015265628	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
605	chr9	2622277	2622278	rs2219143	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9p24.2	NR	rs2219143-A	0.392297	8E-17				Affymetrix, Illumina [24649327] (imputed)	N
605	chr9	2622277	2622278	rs2219143	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	9p24.2	NR	rs2219143-A	0.394378	9E-19		0.017612	[0.014-0.022] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
605	chr9	2622277	2622278	rs2219143	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9p24.2	NR	rs2219143-A	0.389722	4E-18				Affymetrix, Illumina [23114412] (imputed)	N
605	chr9	2622277	2622278	rs2219143	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	9p24.2	NR	rs2219143-A	0.394034	1E-20		0.019099	[0.015-0.023] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
605	chr9	2622277	2622278	rs2219143	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9p24.2	NR	rs2219143-A	0.39027	1E-11				Affymetrix, Illumina [23467995] (imputed)	N
605	chr9	2622277	2622278	rs2219143	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9p24.2	NR	rs2219143-A	0.392303	2E-27				Affymetrix, Illumina [24653286] (imputed)	N
605	chr9	2622277	2622278	rs2219143	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	9p24.2	NR	rs2219143-A	0.394499	5E-29		0.022289	[0.018-0.026] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
605	chr9	2622277	2622278	rs2219143	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9p24.2	NR	rs2219143-A	0.392227	9E-27				Affymetrix, Illumina [24558453] (imputed)	N
605	chr9	2622277	2622278	rs2219143	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	9p24.2	VLDLR	rs2219143-A		7E-22		0.022	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
605	chr9	2622277	2622278	rs2219143	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	9p24.2		rs2219143-?	NR	5E-14				NR [~ 8900000] (imputed)	N
605	chr9	2623614	2623615	rs7032549	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	9p24.2		rs7032549-A	NR	2E-12		0.0124	[0.0089-0.0159] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
605	chr9	2623614	2623615	rs7032549	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	9p24.2		rs7032549-A	NR	8E-18		0.0147	[0.011-0.018] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
605	chr9	2623614	2623615	rs7032549	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9p24.2	NR	rs7032549-A	0.569567	4E-16				Affymetrix, Illumina [24332387] (imputed)	N
605	chr9	2623614	2623615	rs7032549	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	9p24.2	NR	rs7032549-A	0.582691	3E-17		0.016099	[0.012-0.02] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
605	chr9	2623614	2623615	rs7032549	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	9p24.2		rs7032549-?	NR	1E-14				NR [~ 8900000] (imputed)	N
605	chr9	2636129	2636130	rs35889561	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Breast cancer	10,682 White British ancestry cases, 138,504 White British ancestry controls	NA	9p24.2		rs35889561-?	NR	1E-6		0.779251	[0.68-0.88]	NR [682398]	N
605	chr9	2640758	2640759	rs3780181	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	9p24.2		rs3780181-G	NR	8E-12		0.0255	[0.018-0.033] unit decrease	Affymetrix, Illumina [20536134] (imputed)	N
605	chr9	2640758	2640759	rs3780181	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	9p24.2		rs3780181-G	NR	5E-13		0.0298	[0.022-0.038] unit decrease	Affymetrix, Illumina [20521447] (imputed)	N
605	chr9	2640758	2640759	rs3780181	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	9p24.2	NR	rs3780181-G	NR	2E-14		0.0361	[0.027-0.045] unit decrease	Affymetrix [9000000] (imputed)	N
605	chr9	2640758	2640759	rs3780181	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	9p24.2	NR	rs3780181-A	0.932446	1E-23		0.0385591	[0.031-0.046] unit increase	Affymetrix [15000001]	N
605	chr9	2640758	2640759	rs3780181	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	9p24.2	VLDLR	rs3780181-A	0.932372	3E-11		0.0278415	[0.02-0.036] unit increase	Affymetrix [NR] (imputed)	N
605	chr9	2640758	2640759	rs3780181	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	9p24.2	VLDLR	rs3780181-A	0.932372	5E-10		0.0258993	[0.018-0.034] unit increase	Affymetrix [NR] (imputed)	N
605	chr9	2640758	2640759	rs3780181	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	9p24.2	VLDLR	rs3780181-?	NR	2E-14		0.0394	[0.03-0.048] unit decrease	Affymetrix [5701386] (imputed)	N
605	chr9	2640758	2640759	rs3780181	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	LDL cholesterol levels	up to 23,353 African ancestry individuals, 13,171 Asian ancestry individuals, up to 82,522 European ancestry individuals, 6,646 Hispanic individuals	NA	9p24.2		rs3780181-A	0.8834	5E-6		1.2097	[0.69-1.73] unit increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
605	chr9	2640758	2640759	rs3780181	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	9p24.2	VLDLR	rs3780181-A	0.8776	1E-14		0.0358	[0.027-0.045] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
605	chr9	2640758	2640759	rs3780181	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	9p24.2	VLDLR	rs3780181-A	0.8776	1E-11		0.0315	[0.022-0.041] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
605	chr9	2640758	2640759	rs3780181	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	LDL cholesterol levels	32,285 East Asian ancestry individuals, 173,082 European ancestry individuals	8,478 Chinese ancestry individuals	9p24.2	VLDLR	rs3780181-A	0.947	5E-10	(Trans-ethnic initial)	0.0445	[0.03-0.059] unit increase (EA Beta value)	Affymetrix, Illumina [~ 1900000] (imputed)	N
605	chr9	2640758	2640759	rs3780181	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	9p24.2	VLDLR	rs3780181-G	0.08	2E-9		0.044	[NR] unit decrease	NR [NR] (imputed)	N
605	chr9	2640758	2640759	rs3780181	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	9p24.2	VLDLR	rs3780181-G	0.08	7E-10		0.044	[NR] unit decrease	NR [NR] (imputed)	N
605	chr9	2675157	2675158	rs6475925	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	9p24.2	KCNV2	rs6475925-?	NR	3E-6	(alpha ketoglutarate)	0.28807807	[0.17-0.41] unit decrease	Affymetrix [at least 2500000] (imputed)	N
605	chr9	2686272	2686273	rs7030781	31679650	Nath AP	2019-10-30	Am J Hum Genet	Multivariate Genome-Wide Association Analysis of a Cytokine Network Reveals Variants with Widespread Immune, Haematological, and Cardiometabolic Pleiotropy.	Cytokine network levels (multivariate analysis)	9,263 Finnish ancestry individuals	NA	9p24.2	VLDLR	rs7030781-?	NR	4E-13				Illumina [6022229] (imputed)	N
605	chr9	2686272	2686273	rs7030781	31679650	Nath AP	2019-10-30	Am J Hum Genet	Multivariate Genome-Wide Association Analysis of a Cytokine Network Reveals Variants with Widespread Immune, Haematological, and Cardiometabolic Pleiotropy.	Cytokine levels	9,263 Finnish ancestry individuals	NA	9p24.2	VLDLR	rs7030781-?	NR	7E-14	(VEGF-A)			Illumina [6022229] (imputed)	N
605	chr9	2686272	2686273	rs7030781	31217265	Sliz E	2019-06-19	J Med Genet	Genome-wide association study identifies seven novel loci associating with circulating cytokines and cell adhesion molecules in Finns.	Vascular endothelial growth factor levels	13,577 Finnish ancestry individuals	NA	9p24.2	VLDLR	rs7030781-T	0.373	2E-13		0.099	unit increase	Illumina [NR] (imputed)	N
605	chr9	2686272	2686273	rs7030781	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Vascular endothelial growth factor levels	7,118 Finnish ancestry individuals	NA	9p24.2	VLDLR	rs7030781-T		3E-15		0.1368	[0.1-0.17] SD units decrease	NR [10700000] (imputed)	N
605	chr9	2687794	2687795	rs6475938	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Vascular endothelial growth factor levels	21,758 European ancestry individuals	9,173 individuals	9p24.2		rs6475938-A	0.55	1E-32		0.1387	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
605	chr9	2690709	2690710	rs77260291	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Corpus callosum Mid-posterior volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	9p24.2	NR	rs77260291-?		9E-7				Illumina [4322238] (imputed)	N
605	chr9	2691185	2691186	rs10738760	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	9p24.2	NR	rs10738760-?		3E-9	(VEGFA)	0.1963	[NR] unit decrease	Illumina [NR]	N
605	chr9	2691185	2691186	rs10738760	21757650	Debette S	2011-07-14	Circ Res	Identification of cis- and trans-acting genetic variants explaining up to half the variation in circulating vascular endothelial growth factor levels.	Vascular endothelial growth factor levels	3,527 European ancestry individuals	1,727 European ancestry individuals	9p24.2	KCNV2, VLDLR	rs10738760-A	0.49	1E-39				Affymetrix [2540233] (imputed)	N
605	chr9	2692582	2692583	rs2375981	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein VEGFA	5,366 Icelandic ancestry individuals	NA	9p24.2		rs2375981-G	0.4563	6E-39		0.248688	[0.21-0.29] unit decrease	Illumina [7506463] (imputed)	N
605	chr9	2692582	2692583	rs2375981	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein VEGFA	5,366 Icelandic ancestry individuals	NA	9p24.2		rs2375981-G	0.4563	2E-16		0.157759	[0.12-0.2] unit decrease	Illumina [7506463] (imputed)	N
605	chr9	2692582	2692583	rs2375981	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein VEGFA	5,364 Icelandic ancestry individuals	NA	9p24.2		rs2375981-G	0.4563	4E-33		0.22754	[0.19-0.26] unit decrease	Illumina [7506463] (imputed)	N
605	chr9	2692582	2692583	rs2375981	33227023	Wang Y	2020-11-23	PLoS Genet	Genome-wide association study identifies 16 genomic regions associated with circulating cytokines at birth.	Vascular endothelial growth factor A levels	8,318 European ancestry individuals	(see Ahola-Olli 2017)	9p24.2	NR	rs2375981-C	NR	2E-91		0.1249	[0.11-0.14] unit increase	Illumina [~ 9000000] (imputed)	N
605	chr9	2692582	2692583	rs2375981	33110245	Ruotsalainen SE	2020-10-27	Eur J Hum Genet	An expanded analysis framework for multivariate GWAS connects inflammatory biomarkers to functional variants and disease.	Inflammatory biomarkers (multivariate analysis)	6,890 Finnish ancestry individuals	NA	9p24.2	VLDLR, KCNV2	rs2375981-?	NR	2E-17				Illumina [11329225] (imputed)	N
605	chr9	2692582	2692583	rs2375981	26910538	Choi SH	2016-02-24	PLoS Genet	Six Novel Loci Associated with Circulating VEGF Levels Identified by a Meta-analysis of Genome-Wide Association Studies.	Vascular endothelial growth factor levels	9541 European ancestry individuals, 1,115 Cilento (founder/genetic isolated) individuals, 897 Ogliastran (founder/genetic isolated) individuals, 1,759 Val Borbera (founder/genetic isolated) individuals	2,141 European ancestry individuals, 659 Sorbian (founder/genetic isolated) individuals	9p24.2	KCNV2, VLDLR	rs2375981-C	0.54	9E-99		0.21	[0.19-0.23] unit increase	Affymetrix, Illumina [6705861] (imputed)	N
605	chr9	2692621	2692622	rs2375980	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-12p70 levels	8,270 Finnish ancestry individuals	NA	9p24.2	NR	rs2375980-G		5E-9		0.0937	[0.063-0.125] SD units decrease	NR [10700000] (imputed)	N
605	chr9	2692621	2692622	rs2375980	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-10 levels	7,681 Finnish ancestry individuals	NA	9p24.2	NR	rs2375980-G		7E-7		0.0824	[0.05-0.115] SD units decrease	NR [10700000] (imputed)	N
605	chr9	2696554	2696555	rs930811	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	9p24.2	KIAA0020, KCNV2	rs930811-G	0.406	1E-6	(Birth weight )	0.04	[NR] kg increase	Illumina [899892]	N
605	chr9	2717697	2717698	rs7029012	33407418	Jonsson A	2021-01-06	BMC Med Genomics	Genome-wide association study of circulating levels of glucagon during an oral glucose tolerance test.	Glucagon levels in response to oral glucose tolerance test (120 minutes)	553 European ancestry individuals, 1,346 individuals	NA	9p24.2	NR	rs7029012-C	0.4432	6E-6		0.1559	[0.088-0.224] unit decrease	Illumina [NR] (imputed)	N
605	chr9	2735202	2735203	rs7045626	34532976	Wan J	2021-09-17	J Thromb Haemost	Kallikrein augments the anticoagulant function of the protein C system in thrombin generation.	Thrombomodulin sensitivity ratio (normalized endogenous thrombin potential to thrombomodulin)	327 European ancestry individuals	NA	9p24.2		rs7045626-A	0.357	9E-7		0.341	ratio increase	Illumina [7000000] (imputed)	N
605	chr9	2742770	2742771	rs2034764	22005931	Kamboh MI	2011-10-18	Mol Psychiatry	Genome-wide association analysis of age-at-onset in Alzheimer's disease.	Alzheimer's disease (age of onset)	1,190 European ancestry cases, 1,032 cases	NA	9p24.2	KCNV2, VLDLR	rs2034764-?	NR	4E-6		0.879	unit increase	Illumina [2543888] (imputed)	N
606	chr9	2771495	2771496	rs114536232	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	9p24.2	PUM3	rs114536232-A	0.0045	7E-6		0.2562	[0.14-0.37] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
606	chr9	2777383	2777384	rs10812641	23720494	Evans DM	2013-05-29	Hum Mol Genet	Genome-wide association study identifies loci affecting blood copper, selenium and zinc.	Blood trace element (Se levels)	5477 European ancestry individuals	NA	9p24.2	KIAA0020, KCNV2	rs10812641-?	NR	3E-6		0.091	[0.054-0.128] unit increase	Illumina [> 2500000] (imputed)	N
606	chr9	2809076	2809077	rs117983281	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Aspartate aminotransferase levels in low alcohol consumption	8,716 individuals	NA	9p24.2	NR	rs117983281-?	NR	2E-7		0.1449	[0.091-0.199] unit increase	Illumina [~ 7800000] (imputed)	N
606	chr9	2838469	2838470	rs10968457	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	9p24.2	KIAA0020	rs10968457-A	0.047	9E-6	(DBP )	0.03	[NR] mmHg increase	Illumina [899892]	N
606	chr9	2844260	2844261	rs16910644	29594489	Apewokin S	2018-03-28	Support Care Cancer	Host genetic susceptibility to Clostridium difficile infections in patients undergoing autologous stem cell transplantation: a genome-wide association study.	Clostridium difficile infection in multiple myeloma	57 European ancestry cases, 589 European ancestry controls	NA	9p24.2	NR	rs16910644-?		3E-6				Illumina [892589]	N
606	chr9	2844359	2844360	rs10122329	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	9p24.2	NR	rs10122329-G	NR	2E-8	(GEE model)	1.0368	[0.67-1.4] unit increase	NR [NR] (imputed)	N
607	chr9	2977387	2977388	rs4741790	34859065	Zhang F	2021-11-11	Front Cardiovasc Med	Shared Genetic Liability and Causal Associations Between Major Depressive Disorder and Cardiovascular Diseases.	Major depressive disorder or stroke (pleiotropy)	135,458 European ancestry MDD cases, 40,585 European ancestry stroke cases, 751,012 European ancestry controls	NA	9p24.2		rs4741790-?	NR	5E-10				NR [8243736]	N
607	chr9	2978376	2978377	rs7045640	24058526	Bhatnagar P	2013-09-13	PLoS One	Genome-wide meta-analysis of systolic blood pressure in children with sickle cell disease.	Systolic blood pressure in sickle cell anemia	1617 African American cases	NA	9p24.2	KIAA0020, RFX3	rs7045640-A	0.76	8E-6		1.75	[0.99-2.51] mmHg decrease	Illumina [1019297] (imputed)	N
607	chr9	2982930	2982931	rs7044150	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	9p24.2	NR	rs7044150-T	0.33	1E-6	(IFNalpha_STAT1_of_CD4p_T)			Illumina [5084123] (imputed)	N
607	chr9	2982930	2982931	rs7044150	27479909	Hyde CL	2016-08-01	Nat Genet	Identification of 15 genetic loci associated with risk of major depression in individuals of European descent.	Major depressive disorder	84,847 European ancestry cases, 241,266 European ancestry controls	45,773 European ancestry cases, 106,354 European ancestry controls	9p24.2	KIAA0020, RFX3	rs7044150-T	0.384543	4E-8		0.0299	[0.018-0.042] unit decrease	Illumina [1220000] (imputed)	N
607	chr9	2983773	2983774	rs1354115	31926635	Coleman JRI	2019-11-01	Biol Psychiatry	The Genetics of the Mood Disorder Spectrum: Genome-wide Association Analyses of More Than 185,000 Cases and 439,000 Controls.	Bipolar disorder or major depressive disorder	164,933 European ancestry major depressive disorder cases, 20,352 European ancestry bipolar disorder cases, 439,741 European ancestry controls	NA	9p24.2	NR	rs1354115-?	NR	3E-6				NR [NR] (imputed)	N
607	chr9	2983773	2983774	rs1354115	30718901	Howard DM	2019-02-04	Nat Neurosci	Genome-wide meta-analysis of depression identifies 102 independent variants and highlights the importance of the prefrontal brain regions.	Depression	118,811 European ancestry cases, 327,427 European ancestry controls, 127,552 cases, 233,763 controls	414,055 European ancestry cases, 892,299 European ancestry controls	9p24.2	NR	rs1354115-A	0.6243	4E-17		1.019	[1.014-1.023]	NR [8098588] (imputed)	N
607	chr9	2983773	2983774	rs1354115	29700475	Wray NR	2018-04-26	Nat Genet	Genome-wide association analyses identify 44 risk variants and refine the genetic architecture of major depression.	Depression	135,458 European ancestry cases, 344,901 European ancestry controls	NA	9p24.2	PUM3	rs1354115-A	0.62	2E-8		1.03	[1.02-1.04]	NR [9622763] (imputed)	N
607	chr9	2989298	2989299	rs10441718	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	9p24.2		rs10441718-?	NR	6E-11		0.0195	unit increase	NR [NR]	N
607	chr9	3014253	3014254	rs4543592	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking initiation	842,717 European ancestry individuals	NA	9p24.2	PUM3, LINC01231	rs4543592-C		2E-8		1.019	[NR]	Affymetrix [up to 79000000] (imputed)	N
607	chr9	3014253	3014254	rs4543592	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	9p24.2		rs4543592-T	0.52	5E-10		0.012	[0.0081-0.0159] unit decrease	Affymetrix [up to 90000000] (imputed)	N
607	chr9	3014253	3014254	rs4543592	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	9p24.2	RFX3	rs4543592-T	0.5205	3E-10		0.012717051	[0.0088-0.0167] unit decrease	Affymetrix [11514654] (imputed)	N
607	chr9	3014253	3014254	rs4543592	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	9p24.2		rs4543592-?	NR	2E-11				NR [~ 8900000] (imputed)	N
608	chr9	3018434	3018435	rs35515607	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	CAG-552 abundance in stool	5,959 Finnish ancestry individuals	NA	9p24.2		rs35515607-C	0.363683	3E-10		0.106747	[0.074-0.14] unit decrease	Illumina [7980478] (imputed)	N
608	chr9	3025367	3025368	rs3847244	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	9p24.2	NR	rs3847244-T	0.47	4E-16		0.00898212	[0.0068-0.0111] unit increase	NR [9732723] (imputed)	N
608	chr9	3025367	3025368	rs3847244	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	9p24.2	NR	rs3847244-T	0.47	3E-13		0.01867169	[0.014-0.024] unit increase	NR [~ 10000000] (imputed)	N
608	chr9	3071946	3071947	rs559656957	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-to-hip ratio adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,049 whole genome sequenced individuals, 29,518 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,001 Mylopotamos (founder/genetic isolate) individuals, 867 Pomak (founder/genetic isolate) individuals	206,045 European ancestry individuals	9p24.2	CARM1P1	rs559656957-A	0.003	8E-6		0.4626	[0.26-0.67] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
608	chr9	3105101	3105102	rs10969994	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	9p24.2	Intergenic	rs10969994-T	0.3173	3E-10	(MTAG)	0.0112	[0.0077-0.0147] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
608	chr9	3109406	3109407	rs11535405	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	9p24.2	Intergenic	rs11535405-A	0.67	4E-9	(MTAG)	0.0082	[0.0055-0.0109] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
608	chr9	3126960	3126961	rs10970184	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	9p24.2	KIAA0020	rs10970184-?	NR	4E-6	(adipic acid)	0.7373886	[0.42-1.05] unit increase	Affymetrix [at least 2500000] (imputed)	N
608	chr9	3128421	3128422	rs985648	29855537	Hirata T	2018-05-31	Sci Rep	Japanese GWAS identifies variants for bust-size, dysmenorrhea, and menstrual fever that are eQTLs for relevant protein-coding or long non-coding RNAs.	Breast size	5,609 Japanese ancestry female individuals	NA	9p24.2	NR	rs985648-G	0.247866273	8E-6		0.1384	[0.078-0.199] unit increase	Affymetrix [536506]	N
608	chr9	3133101	3133102	rs151165400	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interferon gamma levels	7,701 Finnish ancestry individuals	NA	9p24.2	NR	rs151165400-C		7E-6		0.4268	[0.24-0.62] SD units decrease	NR [10700000] (imputed)	N
608	chr9	3139595	3139596	rs7029475	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	9p24.2	RP11-32F11.2	rs7029475-C	0.4851	2E-8		0.011281673	[0.0073-0.0152] unit decrease	Affymetrix [up to 18485882] (imputed)	N
608	chr9	3142466	3142467	rs12006296	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	9p24.2		rs12006296-C	0.3433	2E-6		31.524254	z score increase	NR [6814003]	N
608	chr9	3142466	3142467	rs12006296	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	9p24.2	NR	rs12006296-C	0.375	4E-10		0.00972294	[0.0067-0.0128] unit increase	NR [9732723] (imputed)	N
608	chr9	3143397	3143398	rs10970292	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	9p24.2		rs10970292-C	0.622	6E-14		0.009	[0.007-0.011] unit increase	NR [NR] (imputed)	N
609	chr9	3157136	3157137	rs12236890	26926045	Adhikari K	2016-03-01	Nat Commun	A genome-wide association scan in admixed Latin Americans identifies loci influencing facial and scalp hair features.	Monobrow thickness	2,922 Latin American individuals	NA	9p24.2	RFX3	rs12236890-?	NR	2E-6				Illumina [9143600] (imputed)	N
609	chr9	3193200	3193201	rs115405361	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	799 African American cases, 14,353 African American controls	NA	9p24.2	NR	rs115405361-?	NR	8E-7		0.3964	[0.24-0.55] unit decrease	Affymetrix, Illumina [12923718] (imputed)	N
609	chr9	3195774	3195775	rs117260909	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	9p24.2	intergenic	rs117260909-C	0.005	7E-6		7.69	[2.7-21.9]	Illumina [1556551]	N
609	chr9	3227729	3227730	rs118125078	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 4, facial height related to vertical position of gnathion)	2,187 European ancestry individuals	NA	9p24.2	NR	rs118125078-T	0.03631	3E-6		0.381	[0.22-0.54] unit decrease	Illumina [10677593] (imputed)	N
609	chr9	3234151	3234152	rs576545	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	9p24.2	NR	rs576545-?	NR	6E-6				Affymetrix [NR]	N
609	chr9	3245126	3245127	rs7855172	29520036	Stein MB	2018-03-08	Mol Psychiatry	Genome-wide analysis of insomnia disorder.	Insomnia	2,297 European American cases, 334 African American cases, 606 Latino American cases, 9,176 European American controls, 2,345 African American controls, 2,893 Latino American controls	NA	9p24.2	RFX3	rs7855172-G	NR	1E-7	(EA)	1.3888888		Illumina [at least 360704] (imputed)	N
609	chr9	3249707	3249708	rs75619936	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	9p24.2	NR	rs75619936-G	0.1329	2E-8		0.0314	[0.02-0.042] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
609	chr9	3276206	3276207	rs150057407	31006051	Kharazmi M	2019-04-20	Calcif Tissue Int	A Genome-Wide Association Study of Bisphosphonate-Associated Atypical Femoral Fracture.	Bisphosphonate-associated atypical femoral fracture	50 European ancestry cases, 1 Chilean ancestry case, 4,891 European ancestry controls	NA	9p24.2	RFX3	rs150057407-G	0.024	2E-6		4.92	[2.563-9.445]	Illumina [7585874] (imputed)	N
610	chr9	3294226	3294227	rs17658908	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	9p24.2	NR	rs17658908-?	NR	1E-9				Affymetrix [NR]	N
610	chr9	3322282	3322283	rs3012708	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (mother's age at death or mother's attained age)	up to 699,000 individuals	NA	9p24.2	NR	rs3012708-A		1E-7				Illumina [458525]	N
610	chr9	3338223	3338224	rs79602980	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mumps	31,227 European ancestry cases, 54,153 European ancestry controls	NA	9p24.2	NR	rs79602980-?	NR	7E-6		0.827	[0.46-1.2] unit decrease	Illumina [at least 560000] (imputed)	N
610	chr9	3397066	3397067	rs17715667	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	9p24.2	GLIS3	rs17715667-?	NR	5E-6	(asparagine)	0.5658418	[0.32-0.81] unit decrease	Affymetrix [at least 2500000] (imputed)	N
610	chr9	3398582	3398583	rs16917956	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9p24.2	NR	rs16917956-T	0.02265	3E-9	(LBP)	0.027	NR unit increase	Illumina [1671387] (imputed)	N
610	chr9	3398678	3398679	rs11791671	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	9p24.2	NR	rs11791671-T	0.067315	4E-8	(Conditioned on chr9:3025368)	0.02785036	[0.018-0.038] unit increase	NR [~ 10000000] (imputed)	N
611	chr9	3518832	3518833	rs116975424	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	9p24.2	RFX3	rs116975424-T	0.9602	1E-6		0.0897	[0.054-0.126] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
611	chr9	3518832	3518833	rs116975424	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	9p24.2	RFX3	rs116975424-T	0.9601	1E-7		0.0968	[0.061-0.133] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
611	chr9	3526655	3526656	rs10758299	31626034	Thomsen H	2019-10-11	Melanoma Res	Genome-wide study on uveal melanoma patients finds association to DNA repair gene TDP1.	Uveal melanoma with chromosome 3 loss	253 European ancestry cases, 5,199 European ancestry controls	NA	9p24.2		rs10758299-C	0.05	5E-7		2.16		Illumina [10258281] (imputed)	N
612	chr9	3589116	3589117	rs12236871	25967671	Li C	2015-05-13	Nat Commun	Genome-wide association analysis identifies three new risk loci for gout arthritis in Han Chinese.	Gout	1,255 Han Chinese ancestry male cases, 1,848 Han Chinese ancestry male controls	3,020 Han Chinese ancestry male cases, 4,424 Han Chinese ancestry male controls	9p24.2	RFX3	rs12236871-?	0.589	1E-10		1.23	[NR]	Affymetrix [603505]	N
612	chr9	3589126	3589127	rs5014946	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	9p24.2	intergenic	rs5014946-A	NR	8E-6	(AA)			Illumina [up to 11995908] (imputed)	N
612	chr9	3652154	3652155	rs1334063	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	9p24.2	NR	rs1334063-A	0.684	2E-7		0.00607227	[0.0038-0.0084] unit increase	NR [9732723] (imputed)	N
612	chr9	3652154	3652155	rs1334063	30468137	Fabbri C	2018-11-23	Br J Psychiatry	Genome-wide association study of treatment-resistance in depression and meta-analysis of three independent samples.	Depressive symptom improvement	1,378 European ancestry treatment resistant cases, 934 European ancestry responders to first treatment	NA	9p24.2	RP11-509J21.1	rs1334063-T	0.33	9E-7		0.08	[0.041-0.119] unit increase	Affymetrix, Illumina [7000000] (imputed)	N
613	chr9	3695930	3695931	rs72701151	33824429	Fjukstad KK	2021-04-06	Pharmacogenomics J	Genetic variants associated with cardiometabolic abnormalities during treatment with selective serotonin reuptake inhibitors: a genome-wide association study.	LDL levels x SSRI levels (escitalopram or citalopram) interaction in schizophrenia or bipolar disorder	181 European ancestry individuals	NA	9p24.2	RP11-509J21.3	rs72701151-G	NR	7E-6		19.5183	[11.33-27.71] unit decrease	Illumina [NR] (imputed)	N
613	chr9	3708601	3708601	rs199600662	30787463	Escala-Garcia M	2019-02-21	Br J Cancer	Genome-wide association study of germline variants and breast cancer-specific mortality.	Breast cancer specific mortality in breast cancer	7,697 European ancestry cases, 88,964 European ancestry controls	NA	9p24.2	NR	rs199600662-?	NR	5E-6		0.8728601	[0.82-0.93]	Affymetrix, Illumina [~ 10400000] (imputed)	N
613	chr9	3734161	3734162	rs10973267	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	9p24.2		rs10973267-?	NR	1E-8				NR [~ 8900000] (imputed)	N
613	chr9	3735705	3735706	rs186900349	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid respiratory support vs population)	495 European ancestry cases, 680,440 European ancestry controls, 102 Hispanic or Latin American cases, 94,330 Hispanic or Latin American controls, 39 Black or African American cases, 22,410 Black or African American controls	NA	9p24.2		rs186900349-?	NR	3E-7		0.9195142	[0.57-1.27] unit decrease	Illumina [9842460] (imputed)	N
613	chr9	3745593	3745594	rs4008765	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs4008765-T	0.455852	3E-9		0.0510599	[0.033-0.069] decrease	Affymetrix [11014269] (imputed)	N
613	chr9	3757010	3757011	rs10814543	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs10814543-C	0.692896	2E-20		0.0884348	[0.069-0.108] decrease	Affymetrix [11014269] (imputed)	N
613	chr9	3759974	3759975	rs1929353	32723796	Mehta SD	2020-07-28	mSystems	Host Genetic Factors Associated with Vaginal Microbiome Composition in Kenyan Women.	Vaginal microbiome composition (community state type)	171 Kenyan ancestry individuals	NA	9p24.2	RFX3-AS1, GLIS3	rs1929353-G	0.24	1E-5		0.35	NR unit increase	Illumina [336151] (imputed)	N
613	chr9	3761908	3761909	rs954980	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal cancer	978 Austrian ancestry cases, 855 Austrian ancestry controls	NA	9p24.2	Intergenic	rs954980-?		5E-6		1.3933399	[NR]	Affymetrix [492217] (imputed)	N
613	chr9	3780509	3780510	rs184708393	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Ischemic stroke (cardioembolic)	174 Indian ancestry cases, 2,154 Indian ancestry controls	NA	9p24.2		rs184708393-?	NR	4E-6		1.0831552	[1.04710012851075-1.12045172680619]	Illumina [up to 7827597] (imputed)	N
613	chr9	3784102	3784103	rs10973519	34620984	Skuladottir AT	2021-10-07	Commun Biol	A genome-wide meta-analysis uncovers six sequence variants conferring risk of vertigo.	Vertigo	48,072 European ancestry cases, 894,541 European ancestry controls	NA	9p24.2		rs10973519-T	NR	5E-6		0.96435		Affymetrix, Illumina [62056310] (imputed)	N
613	chr9	3795099	3795100	rs183726757	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	9p24.2	Intergenic	rs183726757-T	1.0	5E-6	(AA)	2.616	NR unit increase	Illumina [NR] (imputed)	N
614	chr9	3844060	3844061	rs717423	24554482	Leger PD	2014-02-20	J Neurovirol	Genome-wide association study of peripheral neuropathy with D-drug-containing regimens in AIDS Clinical Trials Group protocol 384.	Response to anti-retroviral therapy (ddI/d4T) in HIV-1 infection (Grade 2 peripheral neuropathy)	19 European ancestry cases, 30 African American cases, 9 Hispanic cases, 85 European ancestry controls, 49 African American controls, 30 Hispanic controls	NA	9p24.2	GLIS3	rs717423-?		4E-6	(Hispanic)	14.1	[NR]	Illumina [936149]	N
614	chr9	3869314	3869315	rs73384223	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	9p24.2	GLIS3	rs73384223-T	0.8033	1E-17		0.0205	[0.016-0.025] unit increase	Affymetrix [18391927] (imputed)	N
614	chr9	3902717	3902718	rs1373851	32769997	Zhou W	2020-08-07	Nat Commun	GWAS of thyroid stimulating hormone highlights pleiotropic effects and inverse association with thyroid cancer.	Thyroid stimulating hormone levels	119,715 European ancestry individuals	NA	9p24.2	GLIS3	rs1373851-T	0.943523084830858	6E-9		0.0611	[0.04-0.082] SD decrease	Illumina [22400000] (imputed)	N
614	chr9	3906220	3906221	rs35880221	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	9p24.2	NR	rs35880221-T	0.0868468	8E-11		0.0356656	[0.025-0.046] unit decrease	NR [19129689] (imputed)	N
614	chr9	3911352	3911353	rs13301469	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	9p24.2	NR	rs13301469-C	NR	8E-7		1.08	[NR]	Illumina [7158791] (imputed)	N
614	chr9	3917684	3917685	rs702266	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	9p24.2	NR	rs702266-T	0.871444	4E-8		0.055043	[0.035-0.075] unit increase	Affymetrix [17914406] (imputed)	N
614	chr9	3924446	3924447	rs7861718	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	9p24.2		rs7861718-C	0.31	2E-11		6.71	z score increase	Affymetrix [9061022] (imputed)	N
614	chr9	3924446	3924447	rs7861718	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	9p24.2	NR	rs7861718-C	0.3025	5E-9				NR [9056863] (imputed)	N
614	chr9	3924446	3924447	rs7861718	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 14)	19,670 European ancestry individuals	NA	9p24.2		rs7861718-?	NR	7E-10				NR [9705931] (imputed)	N
614	chr9	3924446	3924447	rs7861718	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (min-P)	26,502 European ancestry individuals	NA	9p24.2	KCNK3, SLC35F6, CENPA, DPYSL5, MAPRE3, TMEM214, AGBL5, OST4, EMILIN1, KHK, CGREF1, ABHD1, PREB, C2orf53, TCF23	rs7861718-?		2E-13				NR [7428630] (imputed)	N
614	chr9	3924446	3924447	rs7861718	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	9p24.2	ZIC4, ZIC1	rs7861718-?		2E-11				NR [7428630] (imputed)	N
614	chr9	3924446	3924447	rs7861718	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (min-P)	26,502 European ancestry individuals	NA	9p24.2	TANK, PSMD14, TBR1	rs7861718-?		7E-13				NR [7428630] (imputed)	N
614	chr9	3924446	3924447	rs7861718	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	9p24.2	GLIS3	rs7861718-?		3E-8				NR [7428630] (imputed)	N
614	chr9	3928114	3928115	rs624290	28247064	Deming Y	2017-02-28	Acta Neuropathol	Genome-wide association study identifies four novel loci associated with Alzheimer's endophenotypes and disease modifiers.	Cerebrospinal T-tau levels	3,146 individuals	NA	9p24.2	GLIS3	rs624290-C	0.106	1E-6		0.044	[0.026-0.062] unit decrease	Illumina [7358575] (imputed)	N
614	chr9	3929423	3929424	rs514716	28247064	Deming Y	2017-02-28	Acta Neuropathol	Genome-wide association study identifies four novel loci associated with Alzheimer's endophenotypes and disease modifiers.	Cerebrospinal P-tau181p levels	3,146 individuals	NA	9p24.2	GLIS3	rs514716-C	0.125	3E-8		0.049	[0.031-0.067] unit decrease	Illumina [7358575] (imputed)	N
614	chr9	3929423	3929424	rs514716	23562540	Cruchaga C	2013-04-04	Neuron	GWAS of cerebrospinal fluid tau levels identifies risk variants for Alzheimer's disease.	Alzheimer's disease biomarkers	591 European ancestry cases, 687 European ancestry controls		9p24.2	GLIS3	rs514716-G	NR	3E-9	(ptau)	0.072	[NR] unit decrease	Illumina [5815690] (imputed)	N
614	chr9	3929423	3929424	rs514716	23562540	Cruchaga C	2013-04-04	Neuron	GWAS of cerebrospinal fluid tau levels identifies risk variants for Alzheimer's disease.	Alzheimer's disease biomarkers	591 European ancestry cases, 687 European ancestry controls		9p24.2	GLIS3	rs514716-G	NR	1E-8	(tau)	0.071	[NR] unit decrease	Illumina [5815690] (imputed)	N
615	chr9	3939704	3939705	rs10974235	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	9p24.2		rs10974235-G	0.35	3E-14		7.6	z score increase	Affymetrix [9061022] (imputed)	N
615	chr9	3939704	3939705	rs10974235	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	9p24.2	NR	rs10974235-G	0.3382	2E-12				NR [9056863] (imputed)	N
615	chr9	3940758	3940759	rs476155	26879886	Wakil SM	2016-02-16	Clin Genet	A common variant association study reveals novel susceptibility loci for low HDL-cholesterol levels in ethnic Arabs.	Low high density lipoprotein cholesterol levels	1,747 Saudi Arab ancestry cases, 2,335 Saudi Arab ancestry controls	517 Saudi Arab ancestry cases, 896 Saudi Arab ancestry controls	9p24.2	GLIS3	rs476155-C	NR	7E-6		1.0638298	[0.88-1.28]	Affymetrix [~ 8000000] (imputed)	N
615	chr9	3940861	3940862	rs12344176	30794219	MacInnes SJ	2019-02-01	Clin Orthop Relat Res	The 2018 Otto Aufranc Award: How Does Genome-wide Variation Affect Osteolysis Risk After THA?	Osteolysis in total hip arthroplasty (time to prosthesis revision)	1,096 European ancestry cases	NA	9p24.2	NR	rs12344176-T	0.78	3E-6		0.225	[0.13-0.32] unit decrease	Illumina [5418572] (imputed)	N
615	chr9	3943124	3943125	rs501631	25599974	Zhang H	2015-01-19	Genet Epidemiol	A genome-wide association study of early spontaneous preterm delivery.	Spontaneous preterm birth (preterm delivery)	935 pre-term delivery mothers, 946 term delivery mothers	66 European ancestry pre-term delivery mothers, 110 African American pre-term delivery mothers, 110 Hispanic pre-term delivery mothers, 7 pre-term delivery mothers,  37 European ancestry term delivery mothers, 84 African American term delivery mothers, 74 Hispanic term delivery mothers, 5 term delivery mothers	9p24.2	GLIS3	rs501631-T	0.48	7E-6		1.33	[NR]	Affymetrix [779326]	N
615	chr9	3944777	3944778	rs576013	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	9p24.2		rs576013-G	0.35	3E-12		7.0	z score increase	Affymetrix [9061022] (imputed)	N
615	chr9	3948364	3948365	rs1017568	28736931	Rotroff DM	2017-07-24	Clin Pharmacol Ther	Genetic Variants in HSD17B3, SMAD3, and IPO11 Impact Circulating Lipids in Response to Fenofibrate in Individuals With Type 2 Diabetes.	Triglyceride change in response to fenofibrate in statin-treated type 2 diabetes	781 European ancestry individuals, 138 African American ancestry individuals, 345 unknown ancestry individuals		9p24.2	GLIS3	rs1017568-?	NR	3E-7	(AA)	0.265	unit increase	Affymetrix, Illumina [8129838] (imputed)	N
615	chr9	3952891	3952892	rs10974256	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	9p24.2	Intergenic	rs10974256-A	0.342	2E-9	(MTAG)	0.0105	[0.0072-0.0138] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
615	chr9	3952891	3952892	rs10974256	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	9p24.2		rs10974256-A	0.3411	4E-10		0.0093	[0.0064-0.0122] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
615	chr9	3952891	3952892	rs10974256	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	9p24.2	Intergenic	rs10974256-A	0.3411	2E-10	(MTAG)	0.0088	[0.0061-0.0115] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
615	chr9	3965688	3965689	rs510807	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	9p24.2	GLIS3	rs510807-A	0.4906	1E-6		1.03	[1.02-1.04]	Affymetrix, Illumina [~ 27000000] (imputed)	N
615	chr9	4015369	4015370	rs564816	19901119	Trevino LR	2009-11-09	J Clin Oncol	Germline genetic variation in an organic anion transporter polypeptide associated with methotrexate pharmacokinetics and clinical effects.	Methotrexate pharmacokinetics (acute lymphoblastic leukemia)	315 European ancestry cases, 73 African American cases, 5 Asian ancestry cases, 247 cases	NA	9p24.2	GLIS3	rs564816-C	0.04	3E-7			[NR]	Affymetrix [398699]	N
615	chr9	4036718	4036719	rs539206	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	9p24.2	NR	rs539206-A	0.202437	5E-11		0.0254168	[0.018-0.033] unit increase	NR [19129689] (imputed)	N
615	chr9	4039726	4039727	rs501461	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	9p24.2	GLIS3	rs501461-T	0.598654	5E-11		0.014883512	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
615	chr9	4039726	4039727	rs501461	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9p24.2	NR	rs501461-T	0.645549	2E-11				Affymetrix, Illumina [24649327] (imputed)	N
615	chr9	4039726	4039727	rs501461	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	9p24.2	NR	rs501461-T	0.59985	4E-12		0.013113	[0.0094-0.0168] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
615	chr9	4039726	4039727	rs501461	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9p24.2	NR	rs501461-T	0.632393	2E-17				Affymetrix, Illumina [23472807] (imputed)	N
615	chr9	4039726	4039727	rs501461	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	9p24.2	NR	rs501461-T	0.599659	7E-20		0.017739	[0.014-0.022] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
615	chr9	4039726	4039727	rs501461	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	9p24.2		rs501461-?	NR	3E-9				NR [~ 8900000] (imputed)	N
615	chr9	4040326	4040327	rs10814819	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	9p24.2	SLC1A1	rs10814819-?	NR	3E-6	(PC 34:3)	0.21483028	[0.12-0.3] unit increase	Affymetrix [at least 2500000] (imputed)	N
615	chr9	4049941	4049942	rs7033677	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	9p24.2		rs7033677-G	NR	3E-10		0.0141	[0.0098-0.0184] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
615	chr9	4049941	4049942	rs7033677	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	9p24.2		rs7033677-G	NR	9E-16		0.0183	[0.014-0.023] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
615	chr9	4049941	4049942	rs7033677	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	9p24.2	GLIS3	rs7033677-A	0.360009	5E-9		0.013739055	[0.0091-0.0183] unit decrease	Affymetrix [93095623] (imputed)	N
615	chr9	4049941	4049942	rs7033677	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	9p24.2	GLIS3	rs7033677-G	0.63997	7E-17		0.019664198	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
615	chr9	4050112	4050113	rs7047871	30591961	Huang L	2018-12-24	Sci China Life Sci	Genome-wide analysis identified 17 new loci influencing intraocular pressure in Chinese population.	Intraocular pressure	5,571 Chinese ancestry individuals	2,981 Chinese ancestry individuals	9p24.2	GLIS3	rs7047871-T	0.69	1E-17		8.54	NR z score decrease	Illumina [at least 900015] (imputed)	N
615	chr9	4053387	4053388	rs2025810	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs2025810-T	0.611466	3E-12		0.0648545	[0.046-0.083] increase	Affymetrix [11014269] (imputed)	N
616	chr9	4086369	4086370	rs10814834	30972912	Wei L	2019-04-10	J Viral Hepat	Genetic variation in FCER1A predicts peginterferon alfa-2a-induced hepatitis B surface antigen clearance in East Asian patients with chronic hepatitis B.	Peginterferon alfa-2a treatment response in chronic hepatitis B infection	up to 1,108 East Asian cases, up to 465 European ancestry cases, up to 63 cases	NA	9p24.2	GLIS3	rs10814834-?		7E-6	(endpoint 6, dominant)	2.173913	[NR]	Illumina [> 750000]	N
616	chr9	4099509	4099510	rs487732	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	9p24.2	GLIS3	rs487732-T	0.65438	5E-9		0.013705773	[0.0091-0.0183] unit increase	Affymetrix [93095623] (imputed)	N
616	chr9	4114584	4114585	rs806057	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs806057-A	0.261371	1E-21		0.095523	[0.075-0.116] increase	Affymetrix [11014269] (imputed)	N
616	chr9	4117712	4117713	rs927315	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	9p24.2	GLIS3	rs927315-T	0.474	6E-6		0.0291	[0.017-0.042] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
616	chr9	4118110	4118111	rs6415788	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	9p24.2		rs6415788-T	NR	5E-21		0.0171	[0.014-0.021] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
616	chr9	4118110	4118111	rs6415788	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	9p24.2		rs6415788-T	NR	8E-21		0.0174	[0.014-0.021] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
616	chr9	4118110	4118111	rs6415788	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	9p24.2	NR	rs6415788-T	0.6	2E-8		0.0107	[0.0069-0.0145] unit decrease	NR [NR]	N
616	chr9	4118110	4118111	rs6415788	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	9p24.2	GLIS3	rs6415788-T	0.603442	1E-22		0.022322582	[0.018-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
616	chr9	4118110	4118111	rs6415788	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	9p24.2	GLIS3	rs6415788-T	0.603457	9E-26		0.024032816	[0.02-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
616	chr9	4118110	4118111	rs6415788	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	9p24.2	GLIS3	rs6415788-T	0.603452	2E-24		0.023291219	[0.019-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
616	chr9	4118110	4118111	rs6415788	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9p24.2	NR	rs6415788-T	0.659297	6E-36				Affymetrix, Illumina [24653286] (imputed)	N
616	chr9	4118110	4118111	rs6415788	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	9p24.2	NR	rs6415788-T	0.60433	2E-36		0.024132	[0.02-0.028] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
616	chr9	4118110	4118111	rs6415788	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9p24.2	NR	rs6415788-T	0.657438	1E-36				Affymetrix, Illumina [24558453] (imputed)	N
616	chr9	4118110	4118111	rs6415788	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	9p24.2	NR	rs6415788-T	0.60432	4E-36		0.02406	[0.02-0.028] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
616	chr9	4118110	4118111	rs6415788	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	9p24.2	GLIS3	rs6415788-G		3E-22		0.022	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
616	chr9	4118110	4118111	rs6415788	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	9p24.2		rs6415788-?	NR	4E-26				NR [~ 8900000] (imputed)	N
616	chr9	4118110	4118111	rs6415788	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	9p24.2	GLIS3	rs6415788-T	0.6011	1E-6		0.0338	[0.02-0.047] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
616	chr9	4118110	4118111	rs6415788	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	9p24.2	GLIS3	rs6415788-T	0.6026	9E-12		0.02539376	[0.018-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
616	chr9	4118110	4118111	rs6415788	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	9p24.2	GLIS3	rs6415788-T	0.6026	4E-11		0.0244589	[0.017-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
616	chr9	4118110	4118111	rs6415788	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	9p24.2	GLIS3	rs6415788-T	0.6027	1E-12		0.02622343	[0.019-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
616	chr9	4120647	4120648	rs1570203	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	9p24.2	GLIS3	rs1570203-A	0.5296	4E-18		0.0221	[0.017-0.027] unit increase	Affymetrix [19819130] (imputed)	N
616	chr9	4120647	4120648	rs1570203	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	9p24.2	GLIS3	rs1570203-A	0.5296	5E-6		0.0108	[0.0061-0.0155] unit increase	Affymetrix [19819130] (imputed)	N
616	chr9	4120647	4120648	rs1570203	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	9p24.2	GLIS3	rs1570203-A	0.5296	6E-25		0.0246	[0.02-0.029] unit increase	Affymetrix [19819130] (imputed)	N
616	chr9	4120647	4120648	rs1570203	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	9p24.2	GLIS3	rs1570203-A	0.5296	6E-20		0.0214	[0.017-0.026] unit increase	Affymetrix [19819130] (imputed)	N
616	chr9	4122841	4122842	rs111647105	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs111647105-G	0.97117	6E-9		0.159409	[0.1-0.22] decrease	Affymetrix [11014269] (imputed)	N
616	chr9	4123043	4123044	rs4740752	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	9p24.2	NR	rs4740752-G	0.36	6E-6		1.08	[1.04-1.12]	Affymetrix [9886854] (imputed)	N
616	chr9	4123043	4123044	rs4740752	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	9p24.2	NR	rs4740752-G	0.36	2E-9			[NR]	Affymetrix [9886854] (imputed)	N
616	chr9	4123043	4123044	rs4740752	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in never smokers	8,631 European ancestry cases, 120,544 European ancestry controls	NA	9p24.2	NR	rs4740752-G	0.36	7E-6		1.08	[1.04-1.12]	Affymetrix [9886854] (imputed)	N
616	chr9	4123043	4123044	rs4740752	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in ever smokers	12,446 European ancestry cases, 59,145 European ancestry controls	NA	9p24.2	NR	rs4740752-G	0.36	9E-6		1.07	[1.04-1.1]	Affymetrix [9886854] (imputed)	N
616	chr9	4123283	4123284	rs4741893	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	9p24.2		rs4741893-?	NR	6E-11				NR [~ 8900000] (imputed)	N
616	chr9	4124376	4124377	rs7872188	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FEV1)	48,943 European ancestry individuals.	57,176 European ancestry individuals, 38,199 individuals.	9p24.2	GLIS3	rs7872188-T	0.4017	2E-10		0.026	[0.018-0.034] unit decrease	Affymetrix [up to 27624732] (imputed)	N
616	chr9	4129656	4129657	rs12336359	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	9p24.2	NR	rs12336359-C	0.40571100000000004	2E-9		0.0186014	[0.013-0.025] unit increase	Affymetrix [16577313] (imputed)	N
616	chr9	4129656	4129657	rs12336359	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Sleep duration	384,317 European ancestry individuals	NA	9p24.2		rs12336359-C	0.4037	9E-9		0.01448	[0.0095-0.0194] unit increase	Affymetrix, Illumina [10862567] (imputed)	N
616	chr9	4133873	4133874	rs568656	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	9p24.2	NR	rs568656-C	0.351139	4E-18		0.0115768	[0.0089-0.0142] unit increase	Affymetrix [16585854] (imputed)	N
616	chr9	4133873	4133874	rs568656	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	9p24.2	NR	rs568656-C	0.351139	3E-12		0.0110565	[0.008-0.0141] unit increase	Affymetrix [16585866] (imputed)	N
616	chr9	4133944	4133945	rs1934659	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (adrenergics, inhalants)	28,880 European ancestry cases, 147,565 European ancestry controls, 5,880 East Asian ancestry cases, 172,846 East Asian ancestry controls	NA	9p24.2		rs1934659-C	NR	3E-10		0.055	[0.038-0.072] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
616	chr9	4140607	4140608	rs10974344	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	9p24.2	NR	rs10974344-T	0.39344697343889	1E-8		0.006813693	[0.0045-0.0091] unit decrease	NR [NR]	N
616	chr9	4140607	4140608	rs10974344	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	9p24.2	NR	rs10974344-T	0.39344697343889	7E-9		0.008891059	[0.0059-0.0119] unit decrease	NR [NR]	N
616	chr9	4143748	4143749	rs10114763	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	9p24.2	NR	rs10114763-T	0.42	4E-10		1.08	[1.05-1.11]	Affymetrix [9886854] (imputed)	N
616	chr9	4143748	4143749	rs10114763	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	9p24.2	NR	rs10114763-T	0.42	6E-10			[NR]	Affymetrix [9886854] (imputed)	N
616	chr9	4143748	4143749	rs10114763	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in non-current smokers	16,488 European ancestry cases, 169,688 European ancestry controls	NA	9p24.2	NR	rs10114763-T	0.42	4E-10		1.08	[1.05-1.11]	Affymetrix [9886854] (imputed)	N
616	chr9	4143748	4143749	rs10114763	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	9p24.2	NR	rs10114763-T	0.423003	4E-26		0.00855474	[0.0069-0.0102] unit increase	Affymetrix [16582909] (imputed)	N
616	chr9	4143748	4143749	rs10114763	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	9p24.2	NR	rs10114763-T	0.423003	3E-22		0.00882246	[0.007-0.0107] unit increase	Affymetrix [16582965] (imputed)	N
616	chr9	4143748	4143749	rs10114763	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	9p24.2	GLIS3	rs10114763-T	0.42	9E-13		1.07	[1.05-1.09]	Affymetrix, Illumina [6224355] (imputed)	N
616	chr9	4144202	4144203	rs10974345	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	9p24.2		rs10974345-?	NR	5E-33				NR [~ 8900000] (imputed)	N
616	chr9	4144396	4144397	rs10974347	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on educational attainment (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	9p24.2		rs10974347-?	NR	2E-8				NR [NR]	N
616	chr9	4144396	4144397	rs10974347	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on cognitive performance (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	9p24.2		rs10974347-?	NR	3E-8				NR [NR]	N
616	chr9	4144771	4144772	rs10814852	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	9p24.2	NR	rs10814852-T	0.396711491514617	2E-8		0.005530694	[0.0036-0.0075] unit decrease	NR [NR]	N
616	chr9	4144995	4144996	rs10814853	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (adrenergics, inhalants)	28,880 European ancestry cases, 147,565 European ancestry controls	NA	9p24.2	GLIS3	rs10814853-T	0.311041	3E-8		0.053840246	[0.035-0.073] unit decrease	Affymetrix [7288503] (imputed)	N
616	chr9	4145339	4145340	rs9298995	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on average household income before tax (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	9p24.2		rs9298995-?	NR	3E-8				NR [NR]	N
616	chr9	4145339	4145340	rs9298995	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on Townsend deprivation index (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	9p24.2		rs9298995-?	NR	3E-8				NR [NR]	N
616	chr9	4145339	4145340	rs9298995	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	9p24.2	NR	rs9298995-A	0.406882458030676	6E-10		0.0057956423	[0.004-0.0076] unit decrease	NR [NR]	N
616	chr9	4145339	4145340	rs9298995	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	9p24.2		rs9298995-?	NR	7E-9				NR [~ 8900000] (imputed)	N
616	chr9	4145339	4145340	rs9298995	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	9p24.2	intergenic	rs9298995-A	0.39833	5E-13		7.218	z score decrease	Illumina [18485882] (imputed)	N
616	chr9	4145339	4145340	rs9298995	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Neuroticism	170,911 European ancestry individuals	NA	9p24.2	NR	rs9298995-A	0.406	1E-6		0.016965462	[0.01-0.024] unit decrease	Affymetrix [up to 6544775] (imputed)	N
616	chr9	4145559	4145560	rs13284170	31972866	Nagel M	2020-01-23	Acta Psychiatr Scand	Genome-wide association study of the sensitivity to environmental stress and adversity (SESA) neuroticism cluster.	Sensitivity to environmental stress and adversity	351,827 European ancestry individuals	NA	9p24.2	NR	rs13284170-A	NR	2E-10		0.01649	NR unit increase	NR [7259579]	N
616	chr9	4145559	4145560	rs13284170	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	9p24.2	NR	rs13284170-A	NR	5E-9		5.859	z score increase	Affymetrix [10847151] (imputed)	N
616	chr9	4145559	4145560	rs13284170	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	9p24.2	GLIS3	rs13284170-A	0.283182	8E-9		5.76	z score increase	NR [10847151] (imputed)	N
616	chr9	4145586	4145587	rs13299289	30279531	Baselmans BML	2018-10-02	Sci Rep	A genetic perspective on the relationship between eudaimonic -and hedonic well-being.	Eudaimonic well-being	108,154 British ancestry individuals	NA	9p24.2	NR	rs13299289-T	0.251453	8E-6		4.47831	[NR] z score decrease	Affymetrix [~ 8600000] (imputed)	N
616	chr9	4145647	4145648	rs10116426	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	9p24.2	NR	rs10116426-C	0.43174900000000005	9E-13		0.00808468	[0.0058-0.0104] unit increase	Affymetrix [16582621] (imputed)	N
616	chr9	4145647	4145648	rs10116426	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	9p24.2	NR	rs10116426-C	0.43174900000000005	6E-13		0.00889555	[0.0064-0.0113] unit increase	Affymetrix [16582614] (imputed)	N
616	chr9	4145780	4145781	rs2380937	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Anxiety	at least 23,606 European ancestry cases, at least 113,351 European ancestry controls	624,615 European ancestry cases, 1,310,854 European ancestry controls	9p24.2	GLIS3	rs2380937-T	0.3867	2E-6		0.011028366	[0.0058-0.0163] unit increase	NR [9417325] (imputed)	N
616	chr9	4145780	4145781	rs2380937	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Neuroticism	274,107 British ancestry individuals	NA	9p24.2	NR	rs2380937-C	0.4011	5E-9		0.01119	[0.0074-0.0149] unit decrease	NR [8968716] (imputed)	N
616	chr9	4145780	4145781	rs2380937	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	9p24.2	NR	rs2380937-T	NR	1E-9		6.116	z score increase	Affymetrix [10847151] (imputed)	N
616	chr9	4145872	4145873	rs2380938	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Asthma	38,369 European ancestry cases, 411,131 European ancestry controls, 13,015 East Asian ancestry cases, 162,933 East Asian ancestry controls	NA	9p24.2		rs2380938-G	NR	4E-9		0.0429	[0.029-0.057] unit increase	Affymetrix, Illumina [25837673] (imputed)	N
616	chr9	4148350	4148351	rs7030351	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	150,266 East Asian ancestry individuals	NA	9p24.2		rs7030351-C	0.328862	2E-8		0.0170021	[0.011-0.023] unit increase	Illumina [13478778] (imputed)	N
616	chr9	4148716	4148717	rs7041606	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Asthma	13,015 East Asian ancestry cases, 162,933 East Asian ancestry controls	NA	9p24.2		rs7041606-C	0.312451166	5E-10		0.091960005	[0.063-0.121] unit increase	Illumina [13429513] (imputed)	N
616	chr9	4154003	4154004	rs12554350	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	9p24.2	GLIS3	rs12554350-T	0.3045	3E-6		0.0328	[0.019-0.047] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
616	chr9	4160363	4160364	rs1983753	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9p24.2		rs1983753-?	NR	3E-10				NR [~ 8900000] (imputed)	N
616	chr9	4163611	4163612	rs73643713	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	9p24.2		rs73643713-T	0.928	1E-9		0.0165	[0.011-0.022] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
616	chr9	4163611	4163612	rs73643713	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	9p24.2	Intergenic	rs73643713-T	0.928	3E-9	(MTAG)	0.015	[0.01-0.02] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
617	chr9	4206387	4206388	rs7048915	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	9p24.2	GLIS3	rs7048915-?		4E-9				Affymetrix, Illumina [NR] (imputed)	N
617	chr9	4207003	4207004	rs7863424	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs7863424-G	0.616261	7E-33		0.108656	[0.09-0.127] decrease	Affymetrix [11014269] (imputed)	N
617	chr9	4208051	4208052	rs10758571	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs10758571-A	0.402065	4E-14		0.0717588	[0.054-0.09] decrease	Affymetrix [11014269] (imputed)	N
617	chr9	4215307	4215308	rs7026684	32528159	Choquet H	2020-06-11	Commun Biol	A multiethnic genome-wide analysis of 44,039 individuals identifies 41 new loci associated with central corneal thickness.	Central corneal thickness	32,292 European ancestry individuals, 9,623 East Asian ancestry individuals, 1,367 Hispanic/Latino individuals, 757 African American  individuals	NA	9p24.2	GLIS3	rs7026684-?	NA	4E-14		1.85	[1.38-2.32] unit increase	Affymetrix [5541230] (imputed)	N
617	chr9	4215307	4215308	rs7026684	29760442	Iglesias AI	2018-05-14	Nat Commun	Cross-ancestry genome-wide association analysis of corneal thickness strengthens link between complex and Mendelian eye diseases.	Central corneal thickness	17,803 European ancestry individuals, 8,107 Asian ancestry individuals	NA	9p24.2	GLIS3	rs7026684-A	0.37	2E-9		1.94	[1.31-2.57] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
617	chr9	4216750	4216751	rs1570204	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Intraocular pressure	133,492 European ancestry individuals	NA	9p24.2	GLIS3	rs1570204-?	NR	3E-8		0.0741	[0.048-0.1] unit decrease	Affymetrix, Illumina [up to 40000000] (imputed)	N
617	chr9	4216750	4216751	rs1570204	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	9p24.2	GLIS3	rs1570204-T	0.6521	7E-31		0.168	[0.14-0.2] unit decrease	Affymetrix [~ 11900000] (imputed)	N
617	chr9	4217027	4217028	rs736893	27064256	Khor CC	2016-04-04	Nat Genet	Genome-wide association study identifies five new susceptibility loci for primary angle closure glaucoma.	Glaucoma (primary angle closure)	5,612 East Asian ancestry cases, 12,451 East Asian ancestry controls, 337 Indian ancestry cases, 2,538 Indian ancestry controls, 576 European ancestry cases, 4,940 European ancestry controls	430 European ancestry cases, 3,133 European ancestry controls, 90 Nepalese ancestry cases, 205 Nepalese ancestry controls, 2,340 East Asian ancestry cases, 3,865 East Asian ancestry controls, 628 South Asian ancestry cases, 552 South Asian ancestry controls, 99 Latin American cases, 224 Latin American controls, 391 Saudi Arabian ancestry cases, 1,659 Saudi Arabian ancestry controls	9p24.2	GLIS3	rs736893-G		1E-14		1.18	[NR]	Illumina [5245080] (imputed)	N
617	chr9	4217027	4217028	rs736893	27064256	Khor CC	2016-04-04	Nat Genet	Genome-wide association study identifies five new susceptibility loci for primary angle closure glaucoma.	Glaucoma (primary angle closure)	5,612 East Asian ancestry cases, 12,451 East Asian ancestry controls, 337 Indian ancestry cases, 2,538 Indian ancestry controls, 576 European ancestry cases, 4,940 European ancestry controls	430 European ancestry cases, 3,133 European ancestry controls, 90 Nepalese ancestry cases, 205 Nepalese ancestry controls, 2,340 East Asian ancestry cases, 3,865 East Asian ancestry controls, 628 South Asian ancestry cases, 552 South Asian ancestry controls, 99 Latin American cases, 224 Latin American controls, 391 Saudi Arabian ancestry cases, 1,659 Saudi Arabian ancestry controls	9p24.2	GLIS3	rs736893-G		1E-11	(Asian)	1.17	[NR]	Illumina [5245080] (imputed)	N
617	chr9	4220831	4220832	rs6476827	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	9p24.2	GLIS3	rs6476827-C	0.66	1E-10		0.086	[0.061-0.111] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
617	chr9	4220831	4220832	rs6476827	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	9p24.2	GLIS3	rs6476827-C	0.6617	5E-33		0.174	[0.14-0.2] unit decrease	Affymetrix [~ 11900000] (imputed)	N
617	chr9	4221297	4221298	rs7873463	32769997	Zhou W	2020-08-07	Nat Commun	GWAS of thyroid stimulating hormone highlights pleiotropic effects and inverse association with thyroid cancer.	Thyroid stimulating hormone levels	119,715 European ancestry individuals	NA	9p24.2	GLIS3	rs7873463-C	0.732353926771298	1E-22		0.0504	[0.04-0.061] SD decrease	Illumina [22400000] (imputed)	N
617	chr9	4223659	4223660	rs10119187	30367059	Teumer A	2018-10-26	Nat Commun	Genome-wide analyses identify a role for SLC17A4 and AADAT in thyroid hormone regulation.	Free thyroxine concentration	49,269 European ancestry individuals	up to 22,383 European ancestry individuals	9p24.2	GLIS3	rs10119187-T	0.81	8E-10		0.048	[0.032-0.064] unit increase	Affymetrix, Illumina [8048941] (imputed)	N
617	chr9	4232587	4232588	rs10974399	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	9p24.2	Intergenic	rs10974399-T	0.4179	4E-8	(MTAG)	0.0099	[0.0064-0.0134] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
617	chr9	4232742	4232743	rs12348139	28440896	Yin X	2017-04-25	Am J Med Genet B Neuropsychiatr Genet	Genome-wide meta-analysis identifies a novel susceptibility signal at CACNA2D3 for nicotine dependence.	Nicotine dependence	7,297 European ancestry cases, 5,577 European ancestry controls, 918 European ancestry whole genome sequenced cases, 921 European ancestry whole genome sequenced controls, African American cases, 1,500 African American controls	NA	9p24.2	GLIS3	rs12348139-T		1E-6		0.05	[0.03-0.07] unit decrease	Illumina [at least 3251541] (imputed)	N
617	chr9	4233389	4233390	rs10974400	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs10974400-T	0.869434	5E-8		0.0728065	[0.046-0.099] increase	Affymetrix [11014269] (imputed)	N
617	chr9	4237040	4237041	rs10974406	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	9p24.2	Intergenic	rs10974406-T	0.6759	3E-8	(MTAG)	0.0098	[0.0063-0.0133] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
617	chr9	4237545	4237546	rs2224492	29235454	Choquet H	2017-12-13	Nat Commun	A large multi-ethnic genome-wide association study identifies novel genetic loci for intraocular pressure.	Intraocular pressure	56,819 European ancestry individuals, 5,748 Hispanic/Latino individuals, 5,119 East Asian ancestry individuals, 2,070 African American individuals	37,930 European and Asian ancestry individuals	9p24.2	GLIS3	rs2224492-?	NR	4E-16		0.11	[NR] unit decrease	Affymetrix [at least 665000] (imputed)	N
617	chr9	4243044	4243045	rs79103584	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	9p24.2	GLIS3	rs79103584-T	0.9862	4E-6		1.14	[1.08-1.21]	Affymetrix, Illumina [~ 27000000] (imputed)	N
617	chr9	4257626	4257627	rs10814901	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	9p24.2	NR	rs10814901-?	NR	3E-6		0.0505	[0.029-0.072] unit decrease	Illumina [at least 560000] (imputed)	N
617	chr9	4263377	4263378	rs17717029	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	9p24.2	NR	rs17717029-C	NR	3E-9		0.0177	[0.012-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
617	chr9	4267208	4267209	rs1571583	23408906	Porcu E	2013-02-07	PLoS Genet	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 14,459 European ancestry females, up to 10,936 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males	NA	9p24.2	GLIS3	rs1571583-A	0.249	3E-8	(TSH)	0.057	[0.037-0.077] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
617	chr9	4267208	4267209	rs1571583	23408906	Porcu E	2013-02-07	PLoS Genet	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 14,459 European ancestry females, up to 10,936 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males	NA	9p24.2	GLIS3	rs1571583-A	0.249	1E-6	(TSH - Males)	0.074	[0.045-0.103] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
617	chr9	4283136	4283137	rs1574285	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	9p24.2		rs1574285-T	NR	1E-24		0.065	[0.053-0.077] unit decrease	Affymetrix, Illumina [25845091] (imputed)	N
617	chr9	4283136	4283137	rs1574285	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	9p24.2		rs1574285-T	0.563084318	8E-14		0.07479853	[0.055-0.094] unit decrease	Illumina [13134967] (imputed)	N
617	chr9	4283136	4283137	rs1574285	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	9p24.2		rs1574285-T	NR	1E-17		0.0656	[0.051-0.081] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
617	chr9	4284960	4284961	rs1403785912	33510174	Jones G	2021-01-28	Nat Commun	Genome-wide meta-analysis of muscle weakness identifies 15 susceptibility loci in older men and women.	Low hand grip strength (60 years and older) (FNIH)	20,335 European ancestry cases, 236,188 European ancestry controls	NA	9p24.2	GLIS3	rs1403785912-AT	0.52	4E-9		0.0765	unit increase	Affymetrix, Illumina [9465622] (imputed)	N
617	chr9	4284961	4284962	rs34494309	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	9p24.2		rs34494309-A	0.420826065	1E-15		1.0707946	[1.053007719-1.088881797]	Illumina [8919992] (imputed)	N
617	chr9	4285118	4285119	rs3934283	33842983	Chung RH	2021-04-12	Diabetologia	Multi-omics analysis identifies CpGs near G6PC2 mediating the effects of genetic variants on fasting glucose.	Fasting blood glucose	18,122 Han Chinese ancestry individuals	1,989 Han Chinese ancestry individuals	9p24.2	GLIS3	rs3934283-G	0.46	1E-9		0.061	[0.041-0.081] unit increase	Affymetrix [774398] (imputed)	N
617	chr9	4286602	4286603	rs78125676	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	9p24.2		rs78125676-G	NR	2E-9		0.0208	[0.014-0.027] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
617	chr9	4287465	4287466	rs7041847	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	9p24.2	GLIS3	rs7041847-G	0.4672	3E-8		0.043	[0.027-0.059] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
617	chr9	4287465	4287466	rs7041847	24509480	Mahajan A	2014-02-09	Nat Genet	Genome-wide trans-ancestry meta-analysis provides insight into the genetic architecture of type 2 diabetes susceptibility.	Type 2 diabetes	12,171 European ancestry cases, 56,862 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls	21,491 European ancestry cases, 55,647 European ancestry controls	9p24.2	GLIS3	rs7041847-A	0.5	5E-6		1.05	[1.01-1.09]	Affymetrix, Illumina [2500000] (imputed)	N
617	chr9	4287465	4287466	rs7041847	22158537	Cho YS	2011-12-11	Nat Genet	Meta-analysis of genome-wide association studies identifies eight new loci for type 2 diabetes in east Asians.	Type 2 diabetes	5,999 East Asian ancestry cases, 9,001 East Asian ancestry controls, 794 Malay ancestry cases, 1,240 Malay ancestry controls, 159 Filipino ancestry cases, 1,624 Filipino ancestry controls	18,127 East Asian ancestry cases, 17,746 East Asian ancestry controls	9p24.2	GLIS3	rs7041847-A	0.41	2E-14		1.1	[1.07-1.13]	Affymetrix, Illumina [2626356] (imputed)	N
617	chr9	4289049	4289050	rs7034200	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting glucose	73,089 European ancestry women	NA	9p24.2	GLIS3	rs7034200-A	0.49084	7E-9		0.016883	[0.011-0.023] unit increase	Affymetrix, Illumina [8700000] (imputed)	N
617	chr9	4289049	4289050	rs7034200	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting glucose	67,506 European ancestry men	NA	9p24.2	GLIS3	rs7034200-A	0.49084	7E-6		0.013933	[0.0079-0.02] unit increase	Affymetrix, Illumina [8700000] (imputed)	N
617	chr9	4289049	4289050	rs7034200	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting glucose	151,188 European ancestry individuals	NA	9p24.2	GLIS3	rs7034200-A	0.49084	1E-14		0.015853	[0.012-0.02] unit increase	Affymetrix, Illumina [8700000] (imputed)	N
617	chr9	4289049	4289050	rs7034200	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	46,511 Asian ancestry cases, 169,776 Asian ancestry controls	NA	9p24.2	NR	rs7034200-C	0.5866	3E-12		0.0608	[0.044-0.078] unit decrease	Affymetrix, Illumina [1077427] (imputed)	N
617	chr9	4289049	4289050	rs7034200	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	9p24.2	GLIS3	rs7034200-A	0.41	8E-12		1.06	1.04-1.08	Illumina [12557761] (imputed)	N
617	chr9	4289049	4289050	rs7034200	25631608	Wessel J	2015-01-29	Nat Commun	Low-frequency and rare exome chip variants associate with fasting glucose and type 2 diabetes susceptibility.	Fasting blood glucose	50,900 European ancestry non-diabetic individuals, 9,664 African American non-diabetic individuals	NA	9p24.2	GLIS3	rs7034200-C	0.496543973312704	3E-8		0.017206302	[0.011-0.023] unit decrease	Illumina [197481]	N
617	chr9	4289049	4289050	rs7034200	22581228	Manning AK	2012-05-13	Nat Genet	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting blood glucose (BMI interaction)	Up to 58,074 European ancestry individuals	Up tp 38,422 European ancestry individuals	9p24.2	GLIS3	rs7034200-A	0.4938	7E-7		8.0E-4	[-0.0005-0.0021] unit increase	Affymetrix, Illumina [~ 2400000] (imputed)	N
617	chr9	4289049	4289050	rs7034200	22581228	Manning AK	2012-05-13	Nat Genet	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting blood glucose	Up to 58,074 European ancestry individuals	Up tp 38,422 European ancestry individuals	9p24.2	GLIS3	rs7034200-A	0.4942	2E-6		0.0148	[0.0087-0.0209] unit increase	Affymetrix, Illumina [~ 2400000] (imputed)	N
617	chr9	4289049	4289050	rs7034200	20081858	Dupuis J	2010-01-17	Nat Genet	New genetic loci implicated in fasting glucose homeostasis and their impact on type 2 diabetes risk.	Homeostasis model assessment of beta-cell function	36,466 European ancestry individuals	62,264 European ancestry individuals	9p24.2	GLIS3	rs7034200-A	0.49	1E-13		0.02	[0.012-0.028] unit decrease (replication)	Affymetrix, Illumina [~ 2500000] (imputed)	N
617	chr9	4289049	4289050	rs7034200	20081858	Dupuis J	2010-01-17	Nat Genet	New genetic loci implicated in fasting glucose homeostasis and their impact on type 2 diabetes risk.	Fasting blood glucose	46,186 European ancestry individuals	76,558 European ancestry individuals	9p24.2	GLIS3	rs7034200-A	0.49	1E-12		0.018	[0.012-0.024] mmol/L increase (replication)	Affymetrix, Illumina [~ 2500000] (imputed)	N
617	chr9	4290084	4290085	rs4237150	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glutamine levels	114,751 European ancestry individuals	NA	9p24.2		rs4237150-G	0.596562	4E-15		0.0330083	[0.025-0.041] unit decrease	NR [11722792] (imputed)	N
617	chr9	4290084	4290085	rs4237150	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Alanine levels	115,078 European ancestry individuals	NA	9p24.2		rs4237150-G	0.596622	5E-12		0.0288366	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
617	chr9	4290084	4290085	rs4237150	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	9p24.2		rs4237150-C	0.428987165	1E-21		0.08878318	[0.071-0.107] unit increase	Illumina [13429769] (imputed)	N
617	chr9	4290084	4290085	rs4237150	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	9p24.2		rs4237150-C	NR	8E-25		0.0211	[0.017-0.025] unit increase	Affymetrix, Illumina [20535873] (imputed)	N
617	chr9	4290084	4290085	rs4237150	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	9p24.2	NR	rs4237150-G	0.5708	7E-31		0.0433	[0.036-0.051] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
617	chr9	4290084	4290085	rs4237150	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	9p24.2	GLIS3	rs4237150-C	0.426	4E-27		1.07	[1.06-1.09]	Affymetrix, Illumina [11800000] (imputed)	N
617	chr9	4290084	4290085	rs4237150	32341051	Wang X	2020-04-01	BMJ Open Diabetes Res Care	Shared genetic architecture and casual relationship between leptin levels and type 2 diabetes: large-scale cross-trait meta-analysis and Mendelian randomization analysis.	Circulating leptin levels or type 2 diabetes	254,263 individuals	NA	9p24.2	GLIS3	rs4237150-?	NR	3E-9				NR [NR]	N
617	chr9	4290084	4290085	rs4237150	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Chin dimples	58,032 European ancestry cases, 13,457 European ancestry controls	NA	9p24.2	GLIS3	rs4237150-?	NR	6E-19		1.1376565	[1.1-1.17]	Illumina [13537761] (imputed)	N
617	chr9	4290084	4290085	rs4237150	25187374	Hwang JY	2014-09-03	Diabetes	Genome-wide association meta-analysis identifies novel variants associated with fasting plasma glucose in East Asians.	Fasting plasma glucose	24,740 East Asian ancestry individuals	21,345 East Asian ancestry individuals	9p24.2	GLIS3	rs4237150-?	NR	4E-9		0.053	[0.035-0.071] unit increase	Affymetrix, Illumina [up to 2315813] (imputed)	N
617	chr9	4290540	4290541	rs10116772	29436472	Casalone E	2018-02-07	Ann Rheum Dis	A novel variant in GLIS3 is associated with osteoarthritis.	Osteoarthritis of the hip or knee (with total joint replacement)	5,414 European ancestry cases, 9,939 European ancestry healthy controls	17,894 European ancestry cases, 89,470 European ancestry healthy controls	9p24.2	GLIS3	rs10116772-C	0.6	4E-8		1.03	[1.02-1.04]	Illumina [270934]	N
617	chr9	4290540	4290541	rs10116772	29436472	Casalone E	2018-02-07	Ann Rheum Dis	A novel variant in GLIS3 is associated with osteoarthritis.	Osteoarthritis of the hip or knee	5,414 European ancestry cases, 9,939 European ancestry healthy controls	12,658 European ancestry cases, 50,898 European ancestry healthy controls	9p24.2	GLIS3	rs10116772-C	0.6002	3E-8		1.03	[1.02-1.04]	Illumina [270934]	N
617	chr9	4290543	4290544	rs10814915	32769997	Zhou W	2020-08-07	Nat Commun	GWAS of thyroid stimulating hormone highlights pleiotropic effects and inverse association with thyroid cancer.	Thyroid stimulating hormone levels	119,715 European ancestry individuals	NA	9p24.2	GLIS3	rs10814915-C	0.553179489205142	1E-29		0.0517	[0.043-0.061] SD decrease	Illumina [22400000] (imputed)	N
617	chr9	4290822	4290823	rs6476839	25751624	Onengut-Gumuscu S	2015-04-01	Nat Genet	Fine mapping of type 1 diabetes susceptibility loci and evidence for colocalization of causal variants with lymphoid gene enhancers.	Type 1 diabetes	6,683 European ancestry cases, 12,173 European ancestry controls, 2,601 European ancestry affected sibling pair families, 69 European ancestry trios	NA	9p24.2	GLIS3	rs6476839-T	0.4	1E-9		1.12		Illumina [135870]	N
617	chr9	4291746	4291747	rs7020673	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	9p24.2	NR	rs7020673-C	0.499652	4E-8		0.0169148	[0.011-0.023] unit increase	NR [19129689] (imputed)	N
617	chr9	4291746	4291747	rs7020673	19430480	Barrett JC	2009-05-10	Nat Genet	Genome-wide association study and meta-analysis find that over 40 loci affect risk of type 1 diabetes.	Type 1 diabetes	7,514 European ancestry cases, 9,045 European ancestry controls	4,267 European ancestry cases, 4,670 European ancestry controls, 4,342 European ancestry trios from 2,319 families	9p24.2	GLIS3	rs7020673-?	0.50	5E-12		1.14	[1.08-1.20]	Affymetrix, Illumina [841622] (imputed)	N
617	chr9	4291927	4291928	rs10974438	34450027	Boer CG	2021-08-24	Cell	Deciphering osteoarthritis genetics across 826,690 individuals from 9 populations.	Osteoarthritis of the hip or knee	88,842 European ancestry cases, 397,208 European ancestry controls, 899 Japanese ancestry cases, 3,396 Japanese ancestry controls	NA	9p24.2		rs10974438-A	0.6457	7E-11		1.0425817	[1.029585434-1.055741929]	Affymetrix, Illumina [NR] (imputed)	N
617	chr9	4291927	4291928	rs10974438	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	200,622 European ancestry individuals	NA	9p24.2	GLIS3	rs10974438-A	0.6398	1E-30		0.0198	[0.016-0.023] unit decrease	Affymetrix, Illumina [34064007] (imputed)	N
617	chr9	4291927	4291928	rs10974438	33830302	Inshaw JRJ	2021-04-08	Diabetologia	Analysis of overlapping genetic association in type 1 and type 2 diabetes.	Type 1 diabetes	7,467 European ancestry cases, 10,218 European ancestry controls	NA	9p24.2	GLIS3	rs10974438-C		1E-6		0.12805976	[0.076-0.18] unit increase	Affymetrix, Illumina [7769284] (imputed)	N
617	chr9	4291927	4291928	rs10974438	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	9p24.2	NR	rs10974438-C	0.3556	9E-23		0.047	[0.038-0.056] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
617	chr9	4291927	4291928	rs10974438	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Osteoarthritis	77,052 European ancestry cases, 378,169 European ancestry controls	NA	9p24.2	NR	rs10974438-A	0.65	1E-8		1.03	[1.02-1.05]	Affymetrix, Illumina [up to 17000000] (imputed)	N
617	chr9	4291927	4291928	rs10974438	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Type 2 diabetes	approximately 459,000 European ancestry individuals	NA	9p24.2		rs10974438-?	NR	5E-9				NR [~ 8900000] (imputed)	N
617	chr9	4291927	4291928	rs10974438	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9p24.2		rs10974438-?	NR	2E-10				NR [~ 8900000] (imputed)	N
617	chr9	4291927	4291928	rs10974438	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	9p24.2	GLIS3	rs10974438-C	0.3567	2E-14		1.05	[1.04-1.07]	Affymetrix, Illumina [~ 27000000] (imputed)	N
617	chr9	4291927	4291928	rs10974438	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	9p24.2	GLIS3	rs10974438-C	0.351215240515481	3E-15		0.0591	[0.044-0.074] unit increase	NR [5035015] (imputed)	N
617	chr9	4292011	4292012	rs7043265	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	9p24.2	GLIS3	rs7043265-C	0.231018	2E-9		0.015952703	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
617	chr9	4292011	4292012	rs7043265	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Fibrosis-4 index in high alcohol intake	33,324 British ancestry individuals	NA	9p24.2		rs7043265-?	0.2297	2E-8		0.007479	unit decrease	NR [6200000] (imputed)	N
617	chr9	4292011	4292012	rs7043265	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Aspartate aminotransferase platelet ratio index in high alcohol intake	33,330 British ancestry individuals	NA	9p24.2		rs7043265-?	0.2297	6E-6		0.007436	unit decrease	NR [6200000] (imputed)	N
617	chr9	4292082	4292083	rs10758593	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 3)	3,566 European ancestry individuals	4,680 European ancestry individuals	9p24.2		rs10758593-A	0.390633763	6E-14				Illumina [7417619] (imputed)	N
617	chr9	4292082	4292083	rs10758593	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	9p24.2	NR	rs10758593-G	0.6011	5E-9		1.0362694	[1.02-1.05]	Affymetrix, Illumina [NR] (imputed)	N
617	chr9	4292082	4292083	rs10758593	22885922	Morris AP	2012-09-01	Nat Genet	Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes.	Type 2 diabetes	6,377 European ancestry male cases, 5,794 European ancestry female cases, 22,243 European ancestry male controls, 34,619 European ancestry female controls	12,938 European ancestry male cases, 8,553 European ancestry female cases, 904 Pakistani ancestry male cases, 274 Pakistani ancestry female cases, 30,273 European ancestry male controls, 25,374 European ancestry female controls, 2,088 Pakistani ancestry male controls, 384 Pakistani ancestry female controls	9p24.2	GLIS3	rs10758593-A	NR	6E-7	(men)	1.08	[1.05-1.11]	Affymetrix, Illumina [up to 2500000] (imputed)	N
617	chr9	4292082	4292083	rs10758593	22885922	Morris AP	2012-09-01	Nat Genet	Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes.	Type 2 diabetes	6,377 European ancestry male cases, 5,794 European ancestry female cases, 22,243 European ancestry male controls, 34,619 European ancestry female controls	12,938 European ancestry male cases, 8,553 European ancestry female cases, 904 Pakistani ancestry male cases, 274 Pakistani ancestry female cases, 30,273 European ancestry male controls, 25,374 European ancestry female controls, 2,088 Pakistani ancestry male controls, 384 Pakistani ancestry female controls	9p24.2	GLIS3	rs10758593-A	0.424978205720837	3E-7		1.06	[1.04-1.09]	Affymetrix, Illumina [up to 2500000] (imputed)	N
617	chr9	4292082	4292083	rs10758593	18840781	Grant SF	2008-10-07	Diabetes	Follow-up analysis of genome-wide association data identifies novel loci for type 1 diabetes.	Type 1 diabetes	563 European ancestry cases, 1,146 European ancestry controls, 483 European ancestry trios	3,303 European ancestry cases, 4,673 European ancestry controls	9p24.2	GLIS3	rs10758593-A	NR	3E-6		1.13	[1.07-1.19]	Illumina [up to 1000000]	N
617	chr9	4293149	4293150	rs10814916	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	9p24.2	GLIS3	rs10814916-C	0.512983	4E-8		0.016154	[0.01-0.022] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
617	chr9	4293149	4293150	rs10814916	22961080	Li H	2012-09-06	Diabetes	A genome-wide association study identifies GRK5 and RASGRP1 as type 2 diabetes loci in Chinese Hans.	Type 2 diabetes	1,839 Han Chinese ancestry cases, 1,873 Han Chinese ancestry controls	15,979 East Asian ancestry cases, 19,360 East Asian ancestry controls, 794 Malay ancestry cases, 1,240 Malay ancestry controls, 159 Filipino ancestry cases, 1,624 Filipino ancestry controls	9p24.2	GLIS3	rs10814916-C	0.439	6E-12		1.11	[1.08-1.15]	Illumina [2234194] (imputed)	N
617	chr9	4294707	4294707	rs34706136	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	9p24.2		rs34706136-TG	NR	9E-12		0.0132	[0.0095-0.0169] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
617	chr9	4294707	4294707	rs34706136	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	9p24.2	NR	rs34706136-TG	0.351047	3E-8		0.0117008	[0.0076-0.0158] unit increase	Affymetrix [16583148] (imputed)	N
617	chr9	4295582	4295583	rs10758594	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Osteoarthritis of the hip or knee	39,427 European ancestry cases, 378,169 European ancestry controls	NA	9p24.2	NR	rs10758594-G	0.58	2E-8		1.04	[1.03-1.06]	Affymetrix, Illumina [up to 17000000] (imputed)	N
617	chr9	4295879	4295880	rs4339696	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting insulin	151,013 European ancestry individuals	NA	9p24.2	GLIS3	rs4339696-T	0.4843	2E-7		0.0092	[0.0057-0.0127] unit increase	Affymetrix, Illumina [32635793] (imputed)	N
617	chr9	4296429	4296430	rs10814917	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	9p24.2		rs10814917-?	NR	4E-9				NR [~ 8900000] (imputed)	N
617	chr9	4297891	4297892	rs4258054	26818947	Imamura M	2016-01-28	Nat Commun	Genome-wide association studies in the Japanese population identify seven novel loci for type 2 diabetes.	Type 2 diabetes	15,463 Japanese ancestry cases, 26,183 Japanese ancestry controls	20,490 East Asian ancestry cases, 22,922 East Asian ancestry controls, 38,947 European ancestry cases, 121,903 European ancestry controls, 10,587 South Asian ancestry cases, 14,378 South Asian ancestry controls, 3,848 Mexican/Latino cases, 4,366 Mexican/Latino controls	9p24.2	GLIS3	rs4258054-T	NR	6E-8	(Japanese)	1.10466	[1.06565-1.1451]	Illumina [7521072] (imputed)	N
617	chr9	4305063	4305064	rs1330307	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	9p24.2	GLIS3	rs1330307-A	0.513657	2E-11		0.00339688	[0.0024-0.0044] unit increase	Affymetrix [13995440] (imputed)	N
617	chr9	4305063	4305064	rs1330307	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	9p24.2	NR	rs1330307-A	0.514403	8E-18		0.00696648	[0.0053-0.0086] unit increase	Affymetrix [16582909] (imputed)	N
617	chr9	4305063	4305064	rs1330307	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	9p24.2	NR	rs1330307-A	0.514883	1E-12		0.00786625	[0.0054-0.0103] unit increase	Affymetrix [16585854] (imputed)	N
617	chr9	4305063	4305064	rs1330307	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	9p24.2	NR	rs1330307-A	0.514403	4E-18		0.00767987	[0.0058-0.0095] unit increase	Affymetrix [16582965] (imputed)	N
617	chr9	4305063	4305064	rs1330307	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	9p24.2	NR	rs1330307-A	0.514883	2E-11		0.00875617	[0.006-0.0116] unit increase	Affymetrix [16585866] (imputed)	N
617	chr9	4311863	4311864	rs10974450	32902719	Hebbar P	2020-09-09	Hum Genet	Genome-wide landscape establishes novel association signals for metabolic traits in the Arab population.	Total cholesterol levels	2,732 Kuwaiti ancestry individuals	NA	9p24.2	GLIS3	rs10974450-?	NR	8E-7		4.946	NR unit increase	Illumina [up to 1520000] (imputed)	N
617	chr9	4311863	4311864	rs10974450	32902719	Hebbar P	2020-09-09	Hum Genet	Genome-wide landscape establishes novel association signals for metabolic traits in the Arab population.	NHDL cholesterol levels	2,732 Kuwaiti ancestry individuals	NA	9p24.2	GLIS3	rs10974450-?	NR	7E-7		4.956	NR unit increase	Illumina [up to 1520000] (imputed)	N
618	chr9	4326242	4326243	rs10974465	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	9p24.2	NR	rs10974465-T	0.17	1E-6		1.1	[1.06-1.14]	Illumina [8468885] (imputed)	N
618	chr9	4326242	4326243	rs10974465	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Squamous cell lung carcinoma	7,426 European ancestry cases, 55,627 European ancestry controls	NA	9p24.2	GLIS3, SLC1A1	rs10974465-T	0.161054917	6E-6		1.122095	[1.067564608-1.179410829]	Illumina [10439017] (imputed)	N
618	chr9	4327959	4327960	rs12342539	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD25 on IgD- CD38- B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	9p24.2		rs12342539-T	0.22166	2E-8		0.1657	[0.11-0.22] unit decrease	Illumina [18238311] (imputed)	N
618	chr9	4334790	4334791	rs28558845	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls, 49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	9p24.2		rs28558845-C	NR	9E-9		0.041	[0.027-0.055] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
618	chr9	4334790	4334791	rs28558845	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	9p24.2	GLIS3	rs28558845-C	0.1551	1E-10		0.218	[0.15-0.28] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
618	chr9	4346225	4346226	rs10974483	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	9p24.2	Intergenic	rs10974483-A	0.5134	4E-8	(MTAG)	0.0072	[0.0047-0.0097] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
618	chr9	4366496	4366497	rs74573085	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	9p24.2		rs74573085-C	0.14	1E-8		5.72	z score increase	Affymetrix [9061022] (imputed)	N
618	chr9	4366496	4366497	rs74573085	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 140)	19,670 European ancestry individuals	NA	9p24.2		rs74573085-?	NR	2E-9				NR [9705931] (imputed)	N
618	chr9	4394252	4394253	rs114559028	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9p24.2	NR	rs114559028-C	0.02091	3E-8	(VDAC2)	0.05374	NR unit increase	Illumina [1671387] (imputed)	N
618	chr9	4394611	4394612	rs10758619	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	9p24.2	NR	rs10758619-?	NR	5E-8				Illumina [7760689] (imputed)	N
618	chr9	4397029	4397030	rs543327869	34112972	DeMichele-Sweet MAA	2021-06-10	Mol Psychiatry	Genome-wide association identifies the first risk loci for psychosis in Alzheimer disease.	Psychosis in Alzheimer's disease	4,551 European ancestry cases, 5,796 European ancestry controls, 894 African American or unknown ancestry cases, 1,076 African American or unknown ancestry controls	NA	9p24.2		rs543327869-T	NR	5E-6		1.46	[1.24-1.72]	Illumina [7105229] (imputed)	N
618	chr9	4404785	4404786	rs10117734	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental extreme longevity (95 years and older)	1,339 middle-aged British cases, 40,934 middle-aged British controls	NA	9p24.2	NR	rs10117734-?	NR	7E-6		0.00421	[0.0024-0.006] unit decrease	Affymetrix [9658292] (imputed)	N
618	chr9	4419153	4419154	rs10814969	24665060	Argos M	2014-03-24	J Med Genet	Genome-wide association study of smoking behaviours among Bangladeshi adults.	Smoking quantity	1,837 Bangladeshi ancestry males, 198 Bangladeshi ancestry females	NA	9p24.2	NR	rs10814969-?		3E-6				Illumina [1211988] (imputed)	N
618	chr9	4426630	4426631	rs10974531	22158540	Wu C	2011-12-11	Nat Genet	Genome-wide association study identifies five loci associated with susceptibility to pancreatic cancer in Chinese populations.	Pancreatic cancer	981 Han Chinese ancestry cases, 1,991 Han Chinese ancestry controls	2,603 Han Chinese ancestry cases, 2,877 Han Chinese ancestry controls	9p24.2	SLC1A1	rs10974531-A	NR	5E-6		1.24	[1.13-1.35]	Affymetrix [666141]	N
619	chr9	4460022	4460023	rs74855156	34162658	Quinn MC	2021-06-23	Cancer Epidemiol Biomarkers Prev	Identification of a locus near ULK1 associated with progression-free survival in ovarian cancer.	Progression free survival in serous epithelial ovarian cancer	4,037 European ancestry individuals	NA	9p24.2	NR	rs74855156-T		9E-6		0.1932	[0.11-0.28] unit increase	Illumina [12770451] (imputed)	N
619	chr9	4478790	4478791	rs150806794	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in hypertension	398 Korean ancestry cases, 15,909 Korean ancestry controls	NA	9p24.2		rs150806794-A	0.02304	2E-6		2.21	[1.59-3.074]	Affymetrix [7975321] (imputed)	N
619	chr9	4500230	4500231	rs7860087	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-17 levels	7,760 Finnish ancestry individuals	NA	9p24.2	NR	rs7860087-G		9E-6		0.3092	[0.17-0.45] SD units increase	NR [10700000] (imputed)	N
619	chr9	4507512	4507513	rs16921385	29503163	Yu H	2018-03-01	Lancet Psychiatry	Five novel loci associated with antipsychotic treatment response in patients with schizophrenia: a genome-wide association study.	Response to risperidone in schizophrenia	425 Han Chinese ancestry cases	559 Han Chinese ancestry cases	9p24.2	SLC1A1	rs16921385-A	NR	4E-8		6.8	[4.37-9.23] unit increase	Illumina [6097251] (imputed)	N
619	chr9	4507993	4507994	rs7033181	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	9p24.2	NR	rs7033181-?	NR	5E-6				Affymetrix [NR]	N
619	chr9	4555304	4555305	rs7856675	23870195	Wojczynski MK	2013-07-19	BMC Med Genet	Genetics of coronary artery calcification among African Americans, a meta-analysis.	Coronary artery calcification	5,823 African American individuals	9,992 European ancestry individuals	9p24.2	SLC1A1	rs7856675-A	0.82	8E-6	(AA)	0.22	[0.12-0.32] unit increase	Affymetrix, Illumina [up to 2727966] (imputed)	N
619	chr9	4576773	4576774	rs1471786	29503163	Yu H	2018-03-01	Lancet Psychiatry	Five novel loci associated with antipsychotic treatment response in patients with schizophrenia: a genome-wide association study.	Response to antipsychotic treatment in schizophrenia	2,413 Han Chinese ancestry cases	1,379 Han Chinese ancestry cases	9p24.2	SLC1A1	rs1471786-G	0.42	2E-9		3.35	[2.25-4.45] unit decrease	Illumina [6097251] (imputed)	N
620	chr9	4590304	4590305	rs301440	29503163	Yu H	2018-03-01	Lancet Psychiatry	Five novel loci associated with antipsychotic treatment response in patients with schizophrenia: a genome-wide association study.	Response to antipsychotic treatment in schizophrenia	2,413 Han Chinese ancestry cases	1,379 Han Chinese ancestry cases	9p24.2	SPATA6L	rs301440-C	0.35	2E-7		3.07	[1.91-4.23] unit decrease	Illumina [6097251] (imputed)	N
620	chr9	4600632	4600633	rs3739643	31095341	Kerns SL	2019-05-16	J Natl Cancer Inst	Radiogenomics Consortium Genome-Wide Association Study Meta-analysis of Late Toxicity after Prostate Cancer Radiotherapy.	Toxicity response to radiotherapy in prostate cancer (hematuria) (time to event)	3,619 European ancestry individuals	538 Japanese ancestry individuals	9p24.1	NR	rs3739643-?	0.04	2E-7	(EA)	3.44	[2.17-5.47]	Affymetrix, Illumina [~ 6000000] (imputed)	N
620	chr9	4655914	4655915	rs7869353	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	9p24.1	SPATA6L	rs7869353-C	0.471953	7E-10		0.013895731	[0.0095-0.0183] unit decrease	Affymetrix [93095623] (imputed)	N
620	chr9	4657039	4657040	rs2146423	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	9p24.1	NR	rs2146423-A	0.559651	3E-16		0.015839	[0.012-0.02] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
620	chr9	4657839	4657840	rs431901	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	9p24.1		rs431901-?	NR	1E-10				NR [~ 8900000] (imputed)	N
620	chr9	4658849	4658850	rs367068	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	9p24.1	SPATA6L	rs367068-A	0.513509	9E-12		0.015388075	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
620	chr9	4658994	4658995	rs7024582	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9p24.1	NR	rs7024582-G	0.558768	1E-14				Affymetrix, Illumina [17210439] (imputed)	N
620	chr9	4659942	4659943	rs7875870	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	9p24.1	SPATA6L	rs7875870-C	0.441025	6E-10		0.014153053	[0.0097-0.0186] unit decrease	Affymetrix [93095623] (imputed)	N
620	chr9	4661573	4661574	rs10974716	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	9p24.1	SPATA6L	rs10974716-G	0.252949	5E-13		0.019042559	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
620	chr9	4661573	4661574	rs10974716	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	9p24.1		rs10974716-?	NR	2E-23				NR [~ 8900000] (imputed)	N
620	chr9	4661573	4661574	rs10974716	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	9p24.1		rs10974716-?	NR	2E-23				NR [~ 8900000] (imputed)	N
620	chr9	4664748	4664749	rs1485202	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	9p24.1		rs1485202-C	0.868	6E-15				Affymetrix [10369434] (imputed)	N
620	chr9	4670314	4670315	rs445684	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	9p24.1	SPATA6L	rs445684-A	0.1032	7E-12		0.04012163	[0.029-0.052] unit decrease	Affymetrix [~ 2500000] (imputed)	N
620	chr9	4695329	4695330	rs113018536	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	9p24.1		rs113018536-C	0.943	4E-11				Affymetrix [10369434] (imputed)	N
620	chr9	4704419	4704420	rs1331191	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	9p24.1	CDC37L1	rs1331191-A	0.513554	4E-10		0.014388082	[0.0099-0.0189] unit increase	Affymetrix [93095623] (imputed)	N
620	chr9	4707047	4707048	rs5896088	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	9p24.1	CDC37L1	rs5896088-A	0.337031	3E-11		0.015947396	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
621	chr9	4726447	4726448	rs76512234	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	9p24.1		rs76512234-G	0.844	6E-20				Affymetrix [10369434] (imputed)	N
621	chr9	4740250	4740251	rs12348423	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	9p24.1		rs12348423-C	NR	1E-11		0.012	[0.0085-0.0155] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
621	chr9	4740250	4740251	rs12348423	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9p24.1		rs12348423-?	NR	1E-21				NR [~ 8900000] (imputed)	N
621	chr9	4744742	4744743	rs409801	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Platelet count	8,850 African American individuals, 18,949 Hispanic/Latino individuals, 541 Asian ancestry individuals, 603 Native American ancestry individuals, 385 individuals	NA	9p24.1	NR	rs409801-?	NR	9E-14		4.432587	[3.27-5.6] unit increase	Illumina [30743395] (imputed)	N
621	chr9	4744742	4744743	rs409801	22139419	Gieger C	2011-11-30	Nature	New gene functions in megakaryopoiesis and platelet formation.	Platelet count	38,891 European ancestry individuals, 1,661 Val Borbera (founder/genetic isolate) individuals, 521 Carlantino (founder/genetic isolate) individuals, 1,198 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,213 South Tyrolean (founder/genetic isolate) individuals, 890 Sorbian (founder/genetic isolate) individuals, 4,292 Sardinian (founder/genetic isolate) individuals	Up to 16,949 European ancestry individuals, 854 Cliento (founder/genetic isolate) individuals, 1,035 Talana (founder/genetic isolate) individuals	9p24.1	AK3	rs409801-C	NR	3E-49		5.585	[4.84-6.33] 10^9/l increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
621	chr9	4746362	4746363	rs4742045	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	9p24.1	AK3	rs4742045-G	0.4139	6E-23		0.03556283	[0.028-0.043] unit increase	Affymetrix [~ 2500000] (imputed)	N
621	chr9	4746538	4746539	rs447124	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	9p24.1	AK3	rs447124-T	0.493123	6E-18		0.020112831	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
621	chr9	4746538	4746539	rs447124	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	9p24.1	AK3	rs447124-T	0.4943	6E-9		0.0209666	[0.014-0.028] unit increase	Affymetrix [~ 2500000] (imputed)	N
621	chr9	4748053	4748054	rs79495097	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9p24.1	NR	rs79495097-G	0.01045	9E-9	(NIPSNAP1)	0.4072	NR unit increase	Illumina [1671387] (imputed)	N
621	chr9	4748404	4748405	rs296880	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	9p24.1	intergenic	rs296880-G	0.708	3E-14		0.02988822	[0.022-0.038] unit increase	Affymetrix [~ 2500000] (imputed)	N
621	chr9	4754202	4754203	rs149524498	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	9p24.1		rs149524498-A	0.97	1E-16				Affymetrix [10369434] (imputed)	N
621	chr9	4757648	4757649	rs10123382	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	9p24.1		rs10123382-?	NR	3E-18				NR [~ 8900000] (imputed)	N
621	chr9	4758793	4758794	rs371506	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	9p24.1		rs371506-G	0.711148	1E-12		0.017946435	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
621	chr9	4758971	4758972	rs113608931	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9p24.1	NR	rs113608931-A	0.296675	1E-500				Affymetrix, Illumina [24588908] (imputed)	N
621	chr9	4762051	4762052	rs77798356	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	9p24.1	NR	rs77798356-G	0.1217	5E-10		0.00211	[0.0014-0.0028] unit increase	Affymetrix [NR] (imputed)	N
621	chr9	4763175	4763176	rs385893	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Lactate levels	114,806 European ancestry individuals	NA	9p24.1		rs385893-T	0.477022	2E-21		0.0392767	[0.031-0.047] unit decrease	NR [11722792] (imputed)	N
621	chr9	4763175	4763176	rs385893	35023831	Chong M	2022-01-13	Elife	GWAS and ExWAS of blood Mitochondrial DNA copy number identifies 71 loci and highlights a potential causal role in dementia.	Mitochondrial DNA copy number	395,718 British, Irish, Other White, South Asian, African ancestry individuals	NA	9p24.1	NR	rs385893-C	0.484225	6E-13		0.0153	[0.011-0.019] unit increase	Affymetrix [23037915] (imputed)	N
621	chr9	4763175	4763176	rs385893	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	9p24.1		rs385893-C	NR	5E-16		0.0165	[0.013-0.02] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
621	chr9	4763175	4763176	rs385893	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	9p24.1		rs385893-C	NR	1E-460		0.0908	[0.087-0.095] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
621	chr9	4763175	4763176	rs385893	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	9p24.1		rs385893-C	0.75492	1E-83		0.0744173	[0.067-0.082] unit increase	Illumina [13478928] (imputed)	N
621	chr9	4763175	4763176	rs385893	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	9p24.1		rs385893-C	NR	2E-27		0.0237	[0.019-0.028] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
621	chr9	4763175	4763176	rs385893	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	9p24.1		rs385893-T	0.476	6E-109				Affymetrix [10369434] (imputed)	N
621	chr9	4763175	4763176	rs385893	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	9p24.1		rs385893-T	0.476	4E-243				Affymetrix [10369434] (imputed)	N
621	chr9	4763175	4763176	rs385893	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	9p24.1		rs385893-T	0.476	8E-16				Affymetrix [10369434] (imputed)	N
621	chr9	4763175	4763176	rs385893	33545615	Hsu LA	2021-01-19	Atherosclerosis	Circulating chemerin levels are determined through circulating platelet counts in nondiabetic Taiwanese people: A bidirectional Mendelian randomization study.	Platelet count	17,037 Han Chinese ancestry individuals	NA	9p24.1	RCL1	rs385893-?	NR	5E-11		5.12	[3.62-6.62] unit decrease (adjusted)	Affymetrix [603527]	N
621	chr9	4763175	4763176	rs385893	33385171	Hagg S	2020-12-31	Hum Genet	Deciphering the genetic and epidemiological landscape of mitochondrial DNA abundance.	Mitochondrial DNA levels	295,150 European ancestry individuals	NA	9p24.1	NR	rs385893-T	0.493	7E-17		0.0215047	[0.016-0.027] unit decrease	Affymetrix [3505788] (imputed)	N
621	chr9	4763175	4763176	rs385893	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	9p24.1	NR	rs385893-C	0.523796	3E-9		0.014428752	[0.0097-0.0192] unit increase	Affymetrix [93095623] (imputed)	N
621	chr9	4763175	4763176	rs385893	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	9p24.1		rs385893-C	0.523805	8E-23		0.022741819	[0.018-0.027] unit increase	Affymetrix [93095623] (imputed)	N
621	chr9	4763175	4763176	rs385893	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	9p24.1		rs385893-C	0.5238	2E-15		0.01940917	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
621	chr9	4763175	4763176	rs385893	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	9p24.1		rs385893-C	0.523893	6E-19		0.0394499	[0.035-0.043] unit decrease	Affymetrix [93095623] (imputed)	N
621	chr9	4763175	4763176	rs385893	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	9p24.1		rs385893-C	0.523886	3E-21		0.021527113	[0.017-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
621	chr9	4763175	4763176	rs385893	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	9p24.1		rs385893-C	0.523811	3E-11		0.016703798	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
621	chr9	4763175	4763176	rs385893	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9p24.1	NR	rs385893-C	0.562514	5E-20				Affymetrix, Illumina [24649327] (imputed)	N
621	chr9	4763175	4763176	rs385893	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	9p24.1	NR	rs385893-C	0.520443	5E-22		0.017898	[0.014-0.022] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
621	chr9	4763175	4763176	rs385893	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	145,648 East Asian ancestry individuals	NA	9p24.1	NR	rs385893-T	0.243702	2E-75		0.079937	[0.071-0.088] SD units decrease	Affymetrix, Illumina [16710488] (imputed)	N
621	chr9	4763175	4763176	rs385893	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9p24.1	NR	rs385893-C	0.544162	3E-31				Affymetrix, Illumina [23114412] (imputed)	N
621	chr9	4763175	4763176	rs385893	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	9p24.1	NR	rs385893-C	0.521145	8E-34		0.023445	[0.02-0.027] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
621	chr9	4763175	4763176	rs385893	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Forns index in high alcohol intake	33,437 British ancestry individuals	NA	9p24.1		rs385893-?	0.4732	3E-22		0.004575	unit increase	NR [6200000] (imputed)	N
621	chr9	4763175	4763176	rs385893	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Fibrosis-4 index in high alcohol intake	33,324 British ancestry individuals	NA	9p24.1		rs385893-?	0.4732	1E-19		0.01006	unit increase	NR [6200000] (imputed)	N
621	chr9	4763175	4763176	rs385893	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Aspartate aminotransferase platelet ratio index in high alcohol intake	33,330 British ancestry individuals	NA	9p24.1		rs385893-?	0.4732	2E-13		0.01004	unit increase	NR [6200000] (imputed)	N
621	chr9	4763175	4763176	rs385893	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Platelet count	8,850 African American individuals, 18,949 Hispanic/Latino individuals, 541 Asian ancestry individuals, 603 Native American ancestry individuals, 385 individuals	NA	9p24.1	NR	rs385893-?	NR	2E-12		3.78671	[2.73-4.84] unit increase	Illumina [30743395] (imputed)	N
621	chr9	4763175	4763176	rs385893	31194788	Read RW	2019-06-13	PLoS One	GWAS and PheWAS of red blood cell components in a Northern Nevadan cohort.	Platelet count	53 African American individuals, 100 Asian ancestry individuals, 4,175 European ancestry individuals, 138 Hispanic or Latin American individuals, 30 Native American individuals, 11 Pacific Islander ancestry individuals, 168 unknown ancestry individuals	NA	9p24.1	RCL1	rs385893-T	0.49	8E-10		7.744	[5.28-10.21] 1000/uL decrease	Illumina [498916]	N
621	chr9	4763175	4763176	rs385893	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	9p24.1		rs385893-?	NR	1E-16				NR [~ 8900000] (imputed)	N
621	chr9	4763175	4763176	rs385893	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Platelet count	108,208 Japanese ancestry individuals	NA	9p24.1	AK3, RCL1	rs385893-?	NR	4E-55		0.07749	[0.068-0.087] unit increase novel	Illumina [6108953] (imputed)	N
621	chr9	4763175	4763176	rs385893	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	9p24.1	intergenic	rs385893-C	0.5221	4E-14		0.027096	[0.02-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
621	chr9	4763175	4763176	rs385893	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	9p24.1	intergenic	rs385893-C	0.5221	1E-13		0.0266236	[0.02-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
621	chr9	4763175	4763176	rs385893	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	9p24.1	intergenic	rs385893-C	0.5221	8E-12		0.02439011	[0.017-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
621	chr9	4763175	4763176	rs385893	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	9p24.1	intergenic	rs385893-C	0.5221	4E-13		0.02603083	[0.019-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
621	chr9	4763175	4763176	rs385893	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	9p24.1	intergenic	rs385893-C	0.522	2E-13		0.02653814	[0.019-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
621	chr9	4763175	4763176	rs385893	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	9p24.1	intergenic	rs385893-C	0.5221	3E-10		0.02248968	[0.015-0.029] unit increase	Affymetrix [~ 2500000] (imputed)	N
621	chr9	4763175	4763176	rs385893	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	9p24.1	intergenic	rs385893-C	0.5221	1E-14		0.02762743	[0.021-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
621	chr9	4763175	4763176	rs385893	26805783	Schick UM	2016-01-21	Am J Hum Genet	Genome-wide Association Study of Platelet Count Identifies Ancestry-Specific Loci in Hispanic/Latino Americans.	Platelet count	12,491 Hispanic/Latin American individuals	7,170 Hispanic/Latin American individuals	9p24.1	AK3, RCL1	rs385893-T	0.6	5E-6		0.06	[0.04-0.08] unit decrease	Illumina [2232944] (imputed)	N
621	chr9	4763175	4763176	rs385893	20139978	Kamatani Y	2010-02-07	Nat Genet	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Platelet count	14,806 Japanese ancestry individuals	NA	9p24.1	RCL1	rs385893-T	0.25	3E-13		0.099	[0.072-0.126] unit decrease	Illumina [561583]	N
621	chr9	4763175	4763176	rs385893	20139978	Kamatani Y	2010-02-07	Nat Genet	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Platelet count	14,806 Japanese ancestry individuals	NA	9p24.1	AK3	rs385893-C	0.76	3E-13		5.928	[4.344-7.507] unit increase	Illumina [561583]	N
621	chr9	4763175	4763176	rs385893	19820697	Soranzo N	2009-10-11	Nat Genet	A genome-wide meta-analysis identifies 22 loci associated with eight hematological parameters in the HaemGen consortium.	Hematological parameters	4,627 European ancestry individuals	9,316 European ancestry individuals	9p24.1	AK3	rs385893-C	NR	9E-17	(PLT)	6.26	[4.78-7.74] 10^9/l increase	Affymetrix, Illumina [~ 2110000] (imputed)	N
621	chr9	4763367	4763368	rs409950	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	9p24.1		rs409950-A	0.184299	2E-27		0.03241714	[0.027-0.038] unit increase	Affymetrix [93095623] (imputed)	N
621	chr9	4763367	4763368	rs409950	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	9p24.1		rs409950-A	0.18431	5E-344		0.12781253	[0.12-0.13] unit increase	Affymetrix [93095623] (imputed)	N
621	chr9	4763367	4763368	rs409950	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	9p24.1		rs409950-A	0.1843	8E-294		0.11771097	[0.11-0.12] unit increase	Affymetrix [93095623] (imputed)	N
621	chr9	4763367	4763368	rs409950	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	9p24.1	intergenic	rs409950-A	0.1815	4E-49		0.0729848	[0.063-0.083] unit increase	Affymetrix [~ 2500000] (imputed)	N
621	chr9	4763367	4763368	rs409950	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	9p24.1	intergenic	rs409950-A	0.1814	5E-39		0.06457455	[0.055-0.074] unit increase	Affymetrix [~ 2500000] (imputed)	N
621	chr9	4763490	4763491	rs12005199	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Acetate levels	115,050 European ancestry individuals	NA	9p24.1		rs12005199-G	0.690458	1E-13		0.0343984	[0.025-0.043] unit increase	NR [11722792] (imputed)	N
621	chr9	4763490	4763491	rs12005199	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Platelet count	27,236 European ancestry individuals	NA	9p24.1		rs12005199-A	0.7495	2E-17		0.0947	[0.073-0.117] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
621	chr9	4763490	4763491	rs12005199	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	9p24.1	NR	rs12005199-A	0.311087	1E-10		0.017432204	[0.012-0.023] unit increase	Affymetrix [93095623] (imputed)	N
621	chr9	4763490	4763491	rs12005199	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	9p24.1		rs12005199-A	0.311369	6E-439		0.13637546	[0.13-0.14] unit increase	Affymetrix [93095623] (imputed)	N
621	chr9	4763490	4763491	rs12005199	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	9p24.1		rs12005199-A	0.311369	5E-356		0.12154508	[0.12-0.13] unit increase	Affymetrix [93095623] (imputed)	N
621	chr9	4763490	4763491	rs12005199	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	9p24.1		rs12005199-A	0.311111	5E-14		0.02048665	[0.015-0.026] unit increase	Affymetrix [93095623] (imputed)	N
621	chr9	4763490	4763491	rs12005199	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	9p24.1		rs12005199-A	0.310979	2E-13		0.018221468	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
621	chr9	4763490	4763491	rs12005199	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	9p24.1		rs12005199-A	0.3111	8E-11		0.017678253	[0.012-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
621	chr9	4763490	4763491	rs12005199	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	9p24.1		rs12005199-A	0.311105	3E-10		0.015522172	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
621	chr9	4763490	4763491	rs12005199	28031487	Guo MH	2016-12-28	Proc Natl Acad Sci U S A	Comprehensive population-based genome sequencing provides insight into hematopoietic regulatory mechanisms.	Platelet count	2,083 European ancestry individuals	NA	9p24.1	JAK2	rs12005199-?	0.332	1E-9		2.8	[NR] 1,000/?L increase	NR [16536512] (imputed)	N
621	chr9	4763490	4763491	rs12005199	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	9p24.1	intergenic	rs12005199-A	0.3081	4E-213		0.1291029	[0.12-0.14] unit increase	Affymetrix [~ 2500000] (imputed)	N
621	chr9	4763490	4763491	rs12005199	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	9p24.1	intergenic	rs12005199-A	0.308	2E-163		0.1125853	[0.1-0.12] unit increase	Affymetrix [~ 2500000] (imputed)	N
621	chr9	4763490	4763491	rs12005199	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	9p24.1	intergenic	rs12005199-A	0.3078	2E-12		0.0285157	[0.021-0.036] unit decrease	Affymetrix [~ 2500000] (imputed)	N
621	chr9	4764331	4764332	rs77265585	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	9p24.1	RP11-307I14.4	rs77265585-C	0.13247	4E-13		0.038222354	[0.028-0.049] unit increase	Affymetrix [93095623] (imputed)	N
621	chr9	4764331	4764332	rs77265585	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	9p24.1	RP11-307I14.4	rs77265585-C	0.132464	1E-9		0.031928793	[0.022-0.042] unit increase	Affymetrix [93095623] (imputed)	N
621	chr9	4764331	4764332	rs77265585	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	9,367 Hispanic or Latin American individuals	NA	9p24.1	NR	rs77265585-G	0.930904	3E-9		0.197258	[0.13-0.26] SD units decrease	Affymetrix, Illumina [26925389] (imputed)	N
621	chr9	4767719	4767720	rs437951	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	9p24.1		rs437951-?	NR	5E-8				Affymetrix [NR] (imputed)	N
621	chr9	4767719	4767720	rs437951	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	9p24.1		rs437951-T	0.223	7E-31				Affymetrix [10369434] (imputed)	N
621	chr9	4768490	4768491	rs367724	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	9p24.1		rs367724-A	0.211	1E-36				Affymetrix [10369434] (imputed)	N
621	chr9	4774014	4774015	rs296859	24065183	Armour JA	2013-09-25	Heredity (Edinb)	Genome-wide association study of handedness excludes simple genetic models.	Handedness	173 European ancestry left-handed individuals, 1,412 European ancestry right-handed individuals	NA	9p24.1	intergenic	rs296859-?	NR	4E-7				Illumina [2499296] (imputed)	N
621	chr9	4774829	4774830	rs35954307	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Forns index in high alcohol intake	33,437 British ancestry individuals	NA	9p24.1		rs35954307-?	0.2233	2E-16		0.004677	unit decrease	NR [6200000] (imputed)	N
621	chr9	4774829	4774830	rs35954307	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Fibrosis-4 index in high alcohol intake	33,324 British ancestry individuals	NA	9p24.1		rs35954307-?	0.2233	4E-21		0.01259	unit decrease	NR [6200000] (imputed)	N
621	chr9	4774829	4774830	rs35954307	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Aspartate aminotransferase platelet ratio index in high alcohol intake	33,330 British ancestry individuals	NA	9p24.1		rs35954307-?	0.2233	9E-15		0.0128	unit decrease	NR [6200000] (imputed)	N
621	chr9	4776985	4776986	rs28659804	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	9p24.1		rs28659804-T	0.679	1E-49				Affymetrix [10369434] (imputed)	N
621	chr9	4780006	4780007	rs296849	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	9p24.1		rs296849-A	NR	3E-8		0.0123	[0.008-0.0166] unit increase	Affymetrix, Illumina [20528270] (imputed)	N
621	chr9	4780051	4780052	rs144745077	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	9p24.1		rs144745077-?	NR	5E-8				Affymetrix [NR] (imputed)	N
621	chr9	4785497	4785498	rs10974778	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or recurrent major depressive disorder x sex interaction (3df)	31,567 European ancestry schizophrenia cases,19,924 European ancestry bipolar disorder cases, 5,314 European ancestry recurrent major depressive disorder cases, 78,190 European ancestry controls, 1,836 East Asian ancestry schizophrenia cases, 3,383 East Asian ancestry controls	NA	9p24.1	NR	rs10974778-A	NR	5E-6				NR [NR] (imputed)	N
621	chr9	4785497	4785498	rs10974778	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or recurrent major depressive disorder x sex interaction (3df)	31,567 European ancestry schizophrenia cases,19,924 European ancestry bipolar disorder cases, 5,314 European ancestry recurrent major depressive disorder cases, 78,190 European ancestry controls	NA	9p24.1	NR	rs10974778-A	NR	5E-6				NR [NR] (imputed)	N
621	chr9	4785497	4785498	rs10974778	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or major depressive disorder x sex interaction (3df)	31,567 European ancestry schizophrenia cases,19,924 European ancestry  bipolar disorder cases, 15,970 European ancestry major depressive disorder cases, 93,025 European ancestry controls, 1,836 East Asian ancestry schizophrenia cases, 3,383 East Asian ancestry controls	NA	9p24.1	NR	rs10974778-A	NR	5E-6				NR [NR] (imputed)	N
621	chr9	4785497	4785498	rs10974778	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or major depressive disorder x sex interaction (3df)	31,567 European ancestry schizophrenia cases,19,924 European ancestry  bipolar disorder cases, 15,970 European ancestry major depressive disorder cases, 93,025 European ancestry controls	NA	9p24.1	AK3, RCL1	rs10974778-A	NR	5E-6			[NR]	NR [NR] (imputed)	N
621	chr9	4788615	4788616	rs35797651	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	9p24.1	NR	rs35797651-G	0.226176	1E-433		0.09826	[0.094-0.103] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
621	chr9	4792338	4792339	rs423955	24026423	Shameer K	2013-09-12	Hum Genet	A genome- and phenome-wide association study to identify genetic variants influencing platelet count and volume and their pleiotropic effects.	Platelet count	13,582 European ancestry individuals	NA	9p24.1	RCL1	rs423955-A	0.66	1E-9		4.94	[NR] unit increase	Illumina [476395]	N
621	chr9	4792370	4792371	rs3808851	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	9p24.1		rs3808851-A	0.815	1E-17				Affymetrix [10369434] (imputed)	N
621	chr9	4792370	4792371	rs3808851	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	9p24.1		rs3808851-A	0.815	2E-29				Affymetrix [10369434] (imputed)	N
621	chr9	4793797	4793798	rs296847	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	9p24.1	RCL1	rs296847-T	0.662	5E-9		0.02221495	[0.015-0.03] unit increase	Affymetrix [~ 2500000] (imputed)	N
621	chr9	4806632	4806633	rs12351570	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Platelet count	108,208 Japanese ancestry individuals	NA	9p24.1	NR	rs12351570-?	NR	5E-28		0.08416	[0.069-0.099] unit decrease novel	Illumina [6108953] (imputed)	N
621	chr9	4807379	4807380	rs7048196	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	9p24.1	RCL1	rs7048196-C	0.013746	1E-13		0.072071195	[0.053-0.091] unit decrease	Affymetrix [93095623] (imputed)	N
621	chr9	4807379	4807380	rs7048196	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	9p24.1	RCL1	rs7048196-C	0.013747	1E-11		0.0657437	[0.047-0.085] unit decrease	Affymetrix [93095623] (imputed)	N
621	chr9	4807470	4807471	rs117857686	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	9p24.1		rs117857686-C	0.976	3E-10				Affymetrix [10369434] (imputed)	N
621	chr9	4807470	4807471	rs117857686	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	9p24.1		rs117857686-C	0.976	5E-24				Affymetrix [10369434] (imputed)	N
621	chr9	4811552	4811553	rs13284787	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	8,188 South Asian ancestry individuals	NA	9p24.1	NR	rs13284787-A	0.775856	5E-14		0.142515	[0.11-0.18] SD units increase	Affymetrix, Illumina [28492174] (imputed)	N
621	chr9	4814947	4814948	rs13300663	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	9p24.1	RCL1	rs13300663-C	0.224251	9E-10		0.016932668	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
621	chr9	4814947	4814948	rs13300663	22139419	Gieger C	2011-11-30	Nature	New gene functions in megakaryopoiesis and platelet formation.	Platelet count	38,891 European ancestry individuals, 1,661 Val Borbera (founder/genetic isolate) individuals, 521 Carlantino (founder/genetic isolate) individuals, 1,198 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,213 South Tyrolean (founder/genetic isolate) individuals, 890 Sorbian (founder/genetic isolate) individuals, 4,292 Sardinian (founder/genetic isolate) individuals	Up to 16,949 European ancestry individuals, 854 Cliento (founder/genetic isolate) individuals, 1,035 Talana (founder/genetic isolate) individuals	9p24.1	RCL1	rs13300663-C	NR	1E-29		5.585	[4.64-6.53] 10^9/l increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
621	chr9	4827762	4827763	rs199997829	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	9p24.1		rs199997829-T	0.976	3E-9				Affymetrix [10369434] (imputed)	N
621	chr9	4832635	4832636	rs35765032	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	8,181 South Asian ancestry individuals	NA	9p24.1	NR	rs35765032-C	0.7736	5E-14		0.142478	[0.11-0.18] SD units increase	Affymetrix, Illumina [28486451] (imputed)	N
621	chr9	4833374	4833375	rs190434396	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	9p24.1	RCL1	rs190434396-G	0.00703299999999996	4E-13		0.1033678	[0.075-0.131] unit decrease	Affymetrix [93095623] (imputed)	N
621	chr9	4833374	4833375	rs190434396	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	9p24.1	RCL1	rs190434396-G	0.00703399999999999	1E-10		0.09130465	[0.064-0.119] unit decrease	Affymetrix [93095623] (imputed)	N
621	chr9	4834393	4834394	rs457287	23263863	Li J	2012-12-20	Hum Mol Genet	GWAS of blood cell traits identifies novel associated loci and epistatic interactions in Caucasian and African-American children.	Platelet count	7,943 African American children, 6,234 European ancestry children	NA	9p24.1	RCL1	rs457287-A	NR	1E-6		5.987	[3.55-8.42] unit decrease	Illumina [544917]	N
621	chr9	4840379	4840380	rs10974808	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	9p24.1	RCL1	rs10974808-G	0.144499	2E-19		0.045035664	[0.035-0.055] unit increase	Affymetrix [93095623] (imputed)	N
621	chr9	4840379	4840380	rs10974808	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	9p24.1	RCL1	rs10974808-G	0.144511	9E-20		0.0448859	[0.035-0.055] unit increase	Affymetrix [93095623] (imputed)	N
621	chr9	4840379	4840380	rs10974808	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	9p24.1	RCL1	rs10974808-G	0.145	7E-151		0.1356046	[0.13-0.15] unit increase	Affymetrix [~ 2500000] (imputed)	N
621	chr9	4840379	4840380	rs10974808	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	9p24.1	RCL1	rs10974808-G	0.1449	1E-122		0.1217556	[0.11-0.13] unit increase	Affymetrix [~ 2500000] (imputed)	N
621	chr9	4840876	4840877	rs1270231	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	9p24.1	NR	rs1270231-A	NR	5E-34		0.0459	[0.038-0.053] unit increase	Affymetrix [9000000] (imputed)	N
621	chr9	4843671	4843672	rs7868737	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	119,629 East Asian ancestry individuals	NA	9p24.1	NR	rs7868737-C	0.53221	1E-58		0.066521	[0.058-0.075] SD units increase	Affymetrix, Illumina [16286228] (imputed)	N
621	chr9	4844264	4844265	rs2236496	23263863	Li J	2012-12-20	Hum Mol Genet	GWAS of blood cell traits identifies novel associated loci and epistatic interactions in Caucasian and African-American children.	Mean corpuscular volume	7,943 African American children, 6,234 European ancestry children	NA	9p24.1	RCL1	rs2236496-T	NR	2E-7		0.4162	[0.26-0.57] unit increase	Illumina [544917]	N
621	chr9	4844264	4844265	rs2236496	23222517	van der Harst P	2012-12-05	Nature	Seventy-five genetic loci influencing the human red blood cell.	Red blood cell traits	62,553 European ancestry individuals, 9,308 South Asian ancestry individuals	63,506 European ancestry individuals	9p24.1	RCL1	rs2236496-C	0.22	1E-19	(EA, MCV)	0.279	[0.22-0.34] unit decrease	Affymetrix, Illumina, Perlegen [2711806] (imputed)	N
621	chr9	4844264	4844265	rs2236496	20139978	Kamatani Y	2010-02-07	Nat Genet	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Mean corpuscular volume	14,364 Japanese ancestry individuals	NA	9p24.1	RCL1	rs2236496-C	0.47	3E-14		0.09	[0.066-0.114] unit decrease	Illumina [561583]	N
621	chr9	4844264	4844265	rs2236496	20139978	Kamatani Y	2010-02-07	Nat Genet	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Mean corpuscular hemoglobin	Up to 14,362 Japanese ancestry individuals	NA	9p24.1	RCL1	rs2236496-C	0.47	6E-11		0.077	[0.053-0.101] unit decrease	Illumina [561583]	N
621	chr9	4844703	4844704	rs2236497	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	9p24.1		rs2236497-C	0.466988	3E-93		0.0735412	[0.067-0.081] unit decrease	Illumina [13476266] (imputed)	N
621	chr9	4844703	4844704	rs2236497	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	9p24.1		rs2236497-C	0.466957	2E-74		0.066197	[0.059-0.073] unit decrease	Illumina [13476299] (imputed)	N
621	chr9	4844703	4844704	rs2236497	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9p24.1	NR	rs2236497-C	0.254871	2E-352				Affymetrix, Illumina [20825802] (imputed)	N
621	chr9	4844777	4844778	rs2236498	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	9p24.1	NR	rs2236498-C	0.20551	8E-370		0.092423	[0.088-0.097] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
621	chr9	4845241	4845242	rs295258	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	153,512 East Asian ancestry individuals	NA	9p24.1		rs295258-A	0.535044	6E-27		0.0335535	[0.027-0.04] unit decrease	Illumina [13479135] (imputed)	N
621	chr9	4845241	4845242	rs295258	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	150,708 East Asian ancestry individuals	NA	9p24.1	NR	rs295258-G	0.470827	2E-22		0.035537	[0.028-0.043] SD units increase	Affymetrix, Illumina [16709798] (imputed)	N
621	chr9	4845519	4845520	rs10815094	23263863	Li J	2012-12-20	Hum Mol Genet	GWAS of blood cell traits identifies novel associated loci and epistatic interactions in Caucasian and African-American children.	Mean corpuscular hemoglobin	7,943 African American children, 6,234 European ancestry children	NA	9p24.1	RCL1	rs10815094-A	NR	5E-6		0.1461	[0.083-0.209] unit increase	Illumina [544917]	N
621	chr9	4847167	4847168	rs3824430	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	9p24.1	RCL1	rs3824430-C	0.210486	2E-97		0.057147767	[0.052-0.062] unit increase	Affymetrix [93095623] (imputed)	N
621	chr9	4847167	4847168	rs3824430	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin	108,054 Japanese ancestry individuals	NA	9p24.1	RCL1	rs3824430-?	NR	2E-61		0.07049	[0.062-0.079] unit decrease novel	Illumina [6108953] (imputed)	N
621	chr9	4847569	4847570	rs7874244	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9p24.1	NR	rs7874244-C	0.261206	2E-153				Affymetrix, Illumina [24332387] (imputed)	N
621	chr9	4847569	4847570	rs7874244	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	9p24.1	NR	rs7874244-C	0.208871	1E-133		0.055913	[0.051-0.06] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
621	chr9	4847569	4847570	rs7874244	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9p24.1	NR	rs7874244-C	0.251612	3E-456				Affymetrix, Illumina [24246363] (imputed)	N
621	chr9	4847569	4847570	rs7874244	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	9p24.1	RCL1	rs7874244-C	0.2097	1E-45		0.0619076	[0.053-0.07] unit increase	Affymetrix [~ 2500000] (imputed)	N
621	chr9	4848296	4848297	rs10815095	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	9p24.1	RCL1	rs10815095-G	0.2103	3E-20		0.04005609	[0.032-0.049] unit increase	Affymetrix [~ 2500000] (imputed)	N
621	chr9	4849646	4849647	rs17803780	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	9p24.1		rs17803780-C	NR	5E-95		0.0404	[0.036-0.044] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
621	chr9	4849646	4849647	rs17803780	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	9p24.1	RCL1	rs17803780-C	0.2102	3E-109		0.09619212	[0.088-0.105] unit decrease	Affymetrix [~ 2500000] (imputed)	N
621	chr9	4849646	4849647	rs17803780	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	9p24.1	RCL1	rs17803780-C	0.2102	1E-94		0.08967346	[0.081-0.098] unit decrease	Affymetrix [~ 2500000] (imputed)	N
622	chr9	4850612	4850613	rs460182	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	9p24.1	RCL1	rs460182-G	0.59779	7E-15		0.017594295	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
622	chr9	4850612	4850613	rs460182	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	9p24.1	RCL1	rs460182-G	0.59781	8E-18		0.019431906	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
622	chr9	4850612	4850613	rs460182	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	9p24.1		rs460182-?	NR	1E-14				NR [~ 8900000] (imputed)	N
622	chr9	4851007	4851008	rs75565599	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	9p24.1	NR	rs75565599-C	NR	2E-20		0.0593	[0.047-0.072] unit decrease	Affymetrix [9000000] (imputed)	N
622	chr9	4852598	4852599	rs10758656	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	9p24.1		rs10758656-G	NR	5E-277		0.0804	[0.076-0.085] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
622	chr9	4852598	4852599	rs10758656	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	9p24.1		rs10758656-G	NR	2E-236		0.0744	[0.07-0.079] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
622	chr9	4852598	4852599	rs10758656	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	9p24.1	RCL1	rs10758656-G	0.209509	7E-64		0.046713185	[0.041-0.052] unit increase	Affymetrix [93095623] (imputed)	N
622	chr9	4852598	4852599	rs10758656	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	9p24.1	RCL1	rs10758656-G	0.209329	2E-229		0.09012569	[0.085-0.096] unit decrease	Affymetrix [93095623] (imputed)	N
622	chr9	4852598	4852599	rs10758656	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	9p24.1	RCL1	rs10758656-G	0.209454	5E-243		0.097217	[0.092-0.102] unit decrease	Affymetrix [93095623] (imputed)	N
622	chr9	4852598	4852599	rs10758656	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	9p24.1	RCL1	rs10758656-G	0.209472	5E-207		0.08614195	[0.081-0.092] unit decrease	Affymetrix [93095623] (imputed)	N
622	chr9	4852598	4852599	rs10758656	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	9p24.1	RCL1	rs10758656-G	0.209365	1E-97		0.057878766	[0.052-0.063] unit decrease	Affymetrix [93095623] (imputed)	N
622	chr9	4852598	4852599	rs10758656	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	9p24.1	RCL1	rs10758656-G	0.209354	4E-24		0.027790934	[0.022-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
622	chr9	4852598	4852599	rs10758656	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	9p24.1	RCL1	rs10758656-G	0.209354	1E-11		0.018588318	[0.013-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
622	chr9	4852598	4852599	rs10758656	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9p24.1	NR	rs10758656-A	0.793782	3E-72				Affymetrix, Illumina [22063850] (imputed)	N
622	chr9	4852598	4852599	rs10758656	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	9p24.1	NR	rs10758656-A	0.792561	2E-70		0.041162	[0.037-0.046] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
622	chr9	4852598	4852599	rs10758656	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	121,047 East Asian ancestry individuals	NA	9p24.1	NR	rs10758656-A	0.534133	1E-73		0.074216	[0.066-0.082] SD units increase	Affymetrix, Illumina [16286195] (imputed)	N
622	chr9	4852598	4852599	rs10758656	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	9p24.1	NR	rs10758656-G	0.208939	2E-301		0.087885	[0.083-0.093] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
622	chr9	4852598	4852599	rs10758656	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	9p24.1		rs10758656-?	NR	4E-61				NR [~ 8900000] (imputed)	N
622	chr9	4852598	4852599	rs10758656	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	9p24.1		rs10758656-?	NR	4E-105				NR [~ 8900000] (imputed)	N
622	chr9	4852598	4852599	rs10758656	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	9p24.1		rs10758656-?	NR	6E-269				NR [~ 8900000] (imputed)	N
622	chr9	4852598	4852599	rs10758656	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular volume	108,256 Japanese ancestry individuals	NA	9p24.1	RCL1	rs10758656-?	NR	3E-75		0.07883	[0.07-0.087] unit decrease novel	Illumina [6108953] (imputed)	N
622	chr9	4852598	4852599	rs10758656	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular hemoglobin	up to 21,020 European ancestry individuals, up to 3,621 African American individuals, up to 15,062 East Asian individuals.	16,389 individuals of European and African American ancestry.	9p24.1	RCL1	rs10758656-A	NR	2E-9	(Asian)	0.004	[0.0026-0.0054] unit increase	NR [2500000] (imputed)	N
622	chr9	4852598	4852599	rs10758656	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	9p24.1	RCL1	rs10758656-G	0.2082	8E-49		0.06415109	[0.056-0.073] unit decrease	Affymetrix [~ 2500000] (imputed)	N
622	chr9	4853750	4853751	rs10758657	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	9p24.1		rs10758657-G	NR	2E-20		0.0263	[0.021-0.032] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
622	chr9	4853750	4853751	rs10758657	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	9p24.1		rs10758657-A	0.791	2E-182		0.39	[0.37-0.42] % increase	Affymetrix [NR] (imputed)	N
622	chr9	4854252	4854253	rs10974815	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	9p24.1		rs10974815-C	0.821	4E-79				Affymetrix [10369434] (imputed)	N
622	chr9	4854252	4854253	rs10974815	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	9p24.1		rs10974815-C	0.821	2E-138				Affymetrix [10369434] (imputed)	N
622	chr9	4855857	4855858	rs7853365	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular volume	22,267 Amish, White ancestry individuals, 447 Asian ancestry individuals, 12,285 Black individuals, 13,831 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	9p24.1		rs7853365-C	NR	2E-20		0.44	[0.34-0.54] unit decrease	Illumina [97506867]	N
622	chr9	4855857	4855858	rs7853365	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular hemoglobin	20,714 Amish, White ancestry individuals, 447 Asian ancestry individuals, 11,246 Black individuals, 13,834 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	9p24.1		rs7853365-C	NR	1E-17		0.16	[0.12-0.2] unit decrease	Illumina [94681438]	N
622	chr9	4855857	4855858	rs7853365	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	9p24.1	RCL1	rs7853365-C	0.207458	1E-194		0.085180156	[0.08-0.091] unit decrease	Affymetrix [93095623] (imputed)	N
622	chr9	4855857	4855858	rs7853365	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red blood cell count	8,679 African American individuals, 17,412 Hispanic or Latin American individuals, 14,690 European ancestry individuals, 127 Asian ancestry individuals, 20 Native American ancestry individuals, 382 individuals	NA	9p24.1		rs7853365-?	0.1882	2E-6		0.0175	[0.01-0.025] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
622	chr9	4855857	4855858	rs7853365	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular volume	8,556 African American individuals, 17,141 Hispanic or Latin American individuals, 14,483 European ancestry individuals, 125 Asian ancestry individuals, 594 Native American ancestry individuals, 377 individuals	NA	9p24.1		rs7853365-?	0.1882	5E-15		0.3747	[0.28-0.47] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
622	chr9	4855857	4855858	rs7853365	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular volume	17,141 Hispanic or Latin American individuals	NA	9p24.1		rs7853365-?	0.185	2E-8		0.4638	[0.3-0.62] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
622	chr9	4855857	4855858	rs7853365	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular volume	14,483 European ancestry individuals	NA	9p24.1		rs7853365-?	0.2013	2E-7		0.332	[0.21-0.46] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
622	chr9	4855857	4855858	rs7853365	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin	8,694 African American individuals, 17,400 Hispanic or Latin American individuals, 14,693 European ancestry individuals, 127 Asian ancestry individuals, 20 Native American ancestry individuals, 382 individuals	NA	9p24.1		rs7853365-?	0.1882	3E-14		0.1399	[0.1-0.18] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
622	chr9	4855857	4855858	rs7853365	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin	17,400 Hispanic or Latin American individuals	NA	9p24.1		rs7853365-?	0.185	3E-7		0.1547	[0.096-0.214] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
622	chr9	4855857	4855858	rs7853365	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin	14,693 European ancestry individuals	NA	9p24.1		rs7853365-?	0.2013	1E-7		0.1314	[0.083-0.18] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
622	chr9	4855857	4855858	rs7853365	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	9p24.1	RCL1	rs7853365-C	0.2073	5E-17		0.03710078	[0.028-0.046] unit decrease	Affymetrix [~ 2500000] (imputed)	N
622	chr9	4855857	4855858	rs7853365	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	9p24.1	RCL1	rs7853365-C	0.2073	5E-10		0.02752521	[0.019-0.036] unit decrease	Affymetrix [~ 2500000] (imputed)	N
622	chr9	4855911	4855912	rs508227	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	9p24.1	RCL1	rs508227-T	0.5908	1E-61		0.043308116	[0.038-0.048] unit increase	Affymetrix [93095623] (imputed)	N
622	chr9	4855911	4855912	rs508227	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	9p24.1	RCL1	rs508227-T	0.590802	1E-57		0.040904786	[0.036-0.046] unit increase	Affymetrix [93095623] (imputed)	N
622	chr9	4856233	4856234	rs1887430	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	9p24.1	RCL1	rs1887430-A	0.5907	9E-99		0.07844472	[0.071-0.086] unit increase	Affymetrix [~ 2500000] (imputed)	N
622	chr9	4856233	4856234	rs1887430	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	9p24.1	RCL1	rs1887430-A	0.5907	3E-80		0.07034669	[0.063-0.078] unit increase	Affymetrix [~ 2500000] (imputed)	N
622	chr9	4856416	4856417	rs10974817	33385171	Hagg S	2020-12-31	Hum Genet	Deciphering the genetic and epidemiological landscape of mitochondrial DNA abundance.	Mitochondrial DNA levels	295,150 European ancestry individuals	NA	9p24.1	NR	rs10974817-A	0.4145	3E-8		0.0145298	[0.0094-0.0197] unit decrease	Affymetrix [3505788] (imputed)	N
622	chr9	4856567	4856568	rs7860287	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	9p24.1		rs7860287-T	0.121	1E-51				Affymetrix [10369434] (imputed)	N
622	chr9	4856876	4856877	rs10758658	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	8,188 South Asian ancestry individuals	NA	9p24.1	NR	rs10758658-G	0.796043	4E-10		0.121929	[0.084-0.16] SD units decrease	Affymetrix, Illumina [28492373] (imputed)	N
622	chr9	4856876	4856877	rs10758658	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Red blood cell count	108,794 Japanese ancestry individuals	NA	9p24.1	RCL1	rs10758658-?	NR	2E-17		0.03646	[0.028-0.045] unit increase novel	Illumina [6108953] (imputed)	N
622	chr9	4856876	4856877	rs10758658	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Red blood cell count	up to 40,258 European ancestry individuals, up to 16,128 African American individuals, up to 15,252 East Asian individuals.	16,389 individuals of European and African American ancestry.	9p24.1	RCL1	rs10758658-?	NR	1E-8				NR [2500000] (imputed)	N
622	chr9	4856876	4856877	rs10758658	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular volume	up to 29,946 European ancestry individuals, up to 6150 African American individuals, 15,074 East Asian individuals.	16,389 individuals of European and African American ancestry.	9p24.1	RCL1	rs10758658-A	NR	1E-11	(Asian)	0.004	[0.0028-0.0052] unit decrease	NR [2500000] (imputed)	N
622	chr9	4856876	4856877	rs10758658	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular volume	up to 29,946 European ancestry individuals, up to 6150 African American individuals, 15,074 East Asian individuals.	16,389 individuals of European and African American ancestry.	9p24.1	RCL1	rs10758658-?	NR	5E-23				NR [2500000] (imputed)	N
622	chr9	4856876	4856877	rs10758658	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular hemoglobin	up to 21,020 European ancestry individuals, up to 3,621 African American individuals, up to 15,062 East Asian individuals.	16,389 individuals of European and African American ancestry.	9p24.1	RCL1	rs10758658-?	NR	1E-8				NR [2500000] (imputed)	N
622	chr9	4856876	4856877	rs10758658	19862010	Ganesh SK	2009-10-11	Nat Genet	Multiple loci influence erythrocyte phenotypes in the CHARGE Consortium.	Mean corpuscular volume	24,167 European ancestry individuals	9,456 European ancestry individuals	9p24.1	RCL1	rs10758658-A	NR	3E-20		0.0	[0.003-0.005] fl decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
622	chr9	4856876	4856877	rs10758658	19862010	Ganesh SK	2009-10-11	Nat Genet	Multiple loci influence erythrocyte phenotypes in the CHARGE Consortium.	Mean corpuscular hemoglobin	24,167 European ancestry individuals	9,456 European ancestry individuals	9p24.1	RCL1	rs10758658-A	NR	2E-14		0.0	[0.004-0.006] pg decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
622	chr9	4858113	4858114	rs10815097	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	9p24.1		rs10815097-A	0.434	3E-9				Affymetrix [10369434] (imputed)	N
622	chr9	4858113	4858114	rs10815097	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	9p24.1	RCL1	rs10815097-G	0.565787	9E-13		0.016484762	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
622	chr9	4863304	4863305	rs10739069	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	9p24.1	RCL1	rs10739069-A	NR	2E-18		0.0407602	[0.031-0.05] unit increase	Affymetrix [16832071] (imputed)	N
622	chr9	4870700	4870701	rs74579063	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	9p24.1		rs74579063-C	0.966	1E-16				Affymetrix [10369434] (imputed)	N
622	chr9	4882381	4882382	rs144666602	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	9p24.1		rs144666602-?	NR	5E-8				Affymetrix [NR] (imputed)	N
622	chr9	4882381	4882382	rs144666602	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	9p24.1		rs144666602-C	0.96	4E-9				Affymetrix [10369434] (imputed)	N
622	chr9	4886760	4886761	rs4495484	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	9p24.1	RCL1	rs4495484-A	0.489631	3E-11		0.016085785	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
622	chr9	4887464	4887465	rs35774855	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	9p24.1		rs35774855-T	0.476	4E-20				Affymetrix [10369434] (imputed)	N
622	chr9	4887464	4887465	rs35774855	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	9p24.1		rs35774855-T	0.476	4E-22				Affymetrix [10369434] (imputed)	N
622	chr9	4888440	4888441	rs9969783	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Dementia and core Alzheimer's disease neuropathologic changes	up to 3,887 cases, up to 1,027 controls	NA		intergenic	rs9969783-A	0.4562	2E-6	(Primary)	0.2949	[0.17-0.42] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
622	chr9	4891796	4891797	rs7856073	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Platelet count	108,208 Japanese ancestry individuals	NA	9p24.1	NR	rs7856073-?	NR	3E-8	(conditional on round 4)	0.02565436	[0.017-0.035] unit decrease novel	Illumina [6108953] (imputed)	N
622	chr9	4967586	4967587	rs17662327	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Positive affect	180,281 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	9p24.1	NR	rs17662327-T	0.7706	6E-6		0.0182	[0.01-0.026] unit increase	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
622	chr9	4970908	4970909	rs7870381	27749845	Lesseur C	2016-10-17	Nat Genet	Genome-wide association analyses identify new susceptibility loci for oral cavity and pharyngeal cancer.	Oropharynx cancer	2,506 European ancestry cases, 135 cases, 5,984 European ancestry controls, 601 controls	NA	9p24.1	intergenic	rs7870381-A	0.577259990144875	3E-6		1.1848341		Illumina [7574753] (imputed)	N
623	chr9	4981600	4981601	rs75900472	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Ulcerative colitis	12,366 European and unknown ancestry cases, 33,609 European and unknown ancestry controls	NA	9p24.1	Intergenic	rs75900472-?		1E-19				Illumina [9578670] (imputed)	N
623	chr9	4981600	4981601	rs75900472	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	9p24.1	Intergenic	rs75900472-?		1E-28				Illumina [9725440] (imputed)	N
623	chr9	4981600	4981601	rs75900472	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	9p24.1	Intergenic	rs75900472-?		3E-16				Illumina [9560910] (imputed)	N
623	chr9	4981600	4981601	rs75900472	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	9p24.1	NR	rs75900472-C	0.3496	1E-28	(EA)	1.1539809	[1.13-1.18]	Affymetrix, Illumina [~ 9000000] (imputed)	N
623	chr9	4981600	4981601	rs75900472	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	9p24.1	NR	rs75900472-C	0.3496	5E-48	(EA)	1.160397	[1.14-1.18]	Affymetrix, Illumina [~ 9000000] (imputed)	N
623	chr9	4981600	4981601	rs75900472	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	9p24.1	NR	rs75900472-C	0.3496	4E-34	(EA)	1.1615441	[1.14-1.19]	Affymetrix, Illumina [~ 9000000] (imputed)	N
623	chr9	4981601	4981602	rs10758669	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Ulcerative colitis vs rheumatoid arthritis (ordinary least squares (OLS))	6,968 ulcerative colitis cases, 8,875 rheumatoid arthritis cases	10,679 ulcerative colitis cases, 5,486 rheumatoid arthritis cases	9p24.1		rs10758669-?	NR	6E-8		0.046	NR unit decrease	NR [5896510] (imputed)	N
623	chr9	4981601	4981602	rs10758669	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	9p24.1	RCL1	rs10758669-C	NR	3E-7		1.0605578	NR	Affymetrix, Illumina [8278136] (imputed)	N
623	chr9	4981601	4981602	rs10758669	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	9p24.1	JAK2	rs10758669-?	NR	5E-43	(subset analysis)			Illumina [130052]	N
623	chr9	4981601	4981602	rs10758669	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	9p24.1	JAK2	rs10758669-C	0.349	8E-45		1.174	[1.139-1.209]	Affymetrix, Illumina [1230000] (imputed)	N
623	chr9	4981601	4981602	rs10758669	21297633	Anderson CA	2011-02-06	Nat Genet	Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47.	Ulcerative colitis	6,687 European ancestry cases, 19,718 European ancestry controls	9,628 European ancestry cases, 12,917 European ancestry controls	9p24.1	JAK2	rs10758669-C	0.35	2E-25		1.17	[1.12-1.21]	Affymetrix, Illumina [~ 1100000] (imputed)	N
623	chr9	4981601	4981602	rs10758669	21102463	Franke A	2010-11-21	Nat Genet	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry trios	9p24.1	JAK2	rs10758669-C	0.349	1E-13		1.18	[1.13-1.23]	Affymetrix, Illumina [953241] (imputed)	N
623	chr9	4981601	4981602	rs10758669	20228799	McGovern DP	2010-03-14	Nat Genet	Genome-wide association identifies multiple ulcerative colitis susceptibility loci.	Ulcerative colitis	2,693 European ancestry cases, 6,791 European ancestry controls	2,009 European ancestry cases, 1,580 European ancestry controls	9p24.1	JAK2	rs10758669-C	NR	1E-6		1.16	[NR]	Illumina [266047]	N
623	chr9	4981601	4981602	rs10758669	18587394	Barrett JC	2008-06-29	Nat Genet	Genome-wide association defines more than 30 distinct susceptibility loci for Crohn's disease.	Crohn's disease	3,230 European ancestry cases, 4,829 European ancestry controls	1,339 European ancestry trios, 2,325 European ancestry cases, 1,809 European ancestry controls	9p24.1	JAK2	rs10758669-C	0.35	3E-9		1.12	[NR]	Affymetrix, Illumina [635547] (imputed)	N
623	chr9	4981865	4981866	rs36051895	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	9p24.1		rs36051895-?	NR	1E-7				NR [~ 8900000] (imputed)	N
623	chr9	4981865	4981866	rs36051895	26301688	Li YR	2015-08-24	Nat Med	Meta-analysis of shared genetic architecture across ten pediatric autoimmune diseases.	Pediatric autoimmune diseases	97 European ancestry thyroiditis cases, 107 European ancestry ankylosing spondylitis cases, 100 European ancestry psoriasis cases, 173 European ancestry celiac disease cases, 254 European ancestry systemic lupus erythematosus cases, 308 European ancestry common variable inmunodeficiency cases, 865 European ancestry ulcerative colitis cases, 1,086 European ancestry Type 1 diabetes cases, 1,123  European ancestry juvenile idiopathic arthritis cases, 1,922  European ancestry Crohn's disease cases, 10,718 European ancestry controls	NA	9p24.1	JAK2	rs36051895-T	0.29	9E-8				Illumina [7347414] (imputed)	N
623	chr9	4984529	4984530	rs1887428	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	Systemic lupus erythematosus	1,639 East Asian ancestry cases, 2,410 East Asian ancestry controls	NA	9p24.1	NR	rs1887428-G	NR	2E-6				Illumina [NR] (imputed)	N
623	chr9	4984529	4984530	rs1887428	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	9p24.1	JAK2	rs1887428-C	0.664	3E-8		0.915	[0.88-0.95]	Illumina [11270530] (imputed)	N
623	chr9	4984529	4984530	rs1887428	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	9p24.1	JAK2	rs1887428-C	0.624848	7E-12		0.015930228	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
623	chr9	4984529	4984530	rs1887428	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	9p24.1	JAK2	rs1887428-C	0.624907	1E-16		0.019155996	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
623	chr9	4984529	4984530	rs1887428	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	9p24.1	JAK2	rs1887428-C	0.624815	2E-12		0.01634936	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
623	chr9	4984529	4984530	rs1887428	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	9p24.1	JAK2	rs1887428-C	0.624801	2E-10		0.014821793	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
623	chr9	4984529	4984530	rs1887428	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	9p24.1	JAK2	rs1887428-C	0.624953	2E-13		0.013059	[0.0088-0.0173] unit increase	Affymetrix [93095623] (imputed)	N
623	chr9	4984529	4984530	rs1887428	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	9p24.1	JAK2	rs1887428-C	0.624932	1E-14		0.018049994	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
623	chr9	4984529	4984530	rs1887428	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	9p24.1		rs1887428-?	NR	8E-8				NR [~ 8900000] (imputed)	N
623	chr9	4984529	4984530	rs1887428	27399966	Morris DL	2016-07-11	Nat Genet	Genome-wide association meta-analysis in Chinese and European individuals identifies ten new loci associated with systemic lupus erythematosus.	Systemic lupus erythematosus	1,659 Chinese ancestry cases, 3,398 Chinese ancestry controls, 4,036 European ancestry cases, 6,959 European ancestry controls	3,043 Chinese ancestry cases, 5,074 Chinese ancestry controls, 2,643 European ancestry cases, 9,032 European ancestry controls	9p24.1	JAK2	rs1887428-G	0.373	2E-17		1.16	[1.12-1.20]	NR [6344733] (imputed)	N
623	chr9	4984529	4984530	rs1887428	27399966	Morris DL	2016-07-11	Nat Genet	Genome-wide association meta-analysis in Chinese and European individuals identifies ten new loci associated with systemic lupus erythematosus.	Systemic lupus erythematosus	1,659 Chinese ancestry cases, 3,398 Chinese ancestry controls, 4,036 European ancestry cases, 6,959 European ancestry controls	3,043 Chinese ancestry cases, 5,074 Chinese ancestry controls, 2,643 European ancestry cases, 9,032 European ancestry controls	9p24.1	JAK2	rs1887428-G	0.373	1E-6	(EA)	1.11	[1.06-1.16]	NR [6344733] (imputed)	N
623	chr9	4984529	4984530	rs1887428	27399966	Morris DL	2016-07-11	Nat Genet	Genome-wide association meta-analysis in Chinese and European individuals identifies ten new loci associated with systemic lupus erythematosus.	Systemic lupus erythematosus	1,659 Chinese ancestry cases, 3,398 Chinese ancestry controls, 4,036 European ancestry cases, 6,959 European ancestry controls	3,043 Chinese ancestry cases, 5,074 Chinese ancestry controls, 2,643 European ancestry cases, 9,032 European ancestry controls	9p24.1	JAK2	rs1887428-G	0.346	4E-14	(Chinese)	1.24	[1.17-1.31]	NR [6344733] (imputed)	N
623	chr9	4985878	4985879	rs2274471	23266558	Yamazaki K	2012-12-21	Gastroenterology	A genome-wide association study identifies 2 susceptibility Loci for Crohn's disease in a Japanese population.	Crohn's disease	372 Japanese ancestry cases,3,389 Japanese ancestry controls	Up to 1,151 Japanese ancestry cases, up to 15,800 Japanese ancestry controls	9p24.1	JAK2	rs2274471-A	NR	5E-6		1.27	[1.15-1.41]	Illumina [4929034] (imputed)	N
623	chr9	4987957	4987958	rs10974900	32518416	Dawoud AAZ	2020-06-10	Leukemia	Clonal myelopoiesis in the UK Biobank cohort: ASXL1 mutations are strongly associated with smoking.	Myeloid clonal hematopoiesis	1,166 cases, 30,892 controls	NA	9p24.1	NR	rs10974900-C	0.587	8E-6		1.2150668	NR	Affymetrix [265112]	N
623	chr9	4995740	4995741	rs10974905	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9p24.1	NR	rs10974905-C	0.02265	9E-12	(MYO1B)	0.1293	NR unit increase	Illumina [1671387] (imputed)	N
623	chr9	4999302	4999303	rs1327494	33057200	Bao EL	2020-10-14	Nature	Inherited myeloproliferative neoplasm risk affects haematopoietic stem cells.	Myeloproliferative neoplasms	1,086 British ancestry cases, 407,155 British ancestry controls, 640 Finnish ancestry cases, 176,259 Finnish ancestry controls	NA	9p24.1	JAK2	rs1327494-G	0.2735	3E-128		2.0	1.89-2.12	Affymetrix [6845584] (imputed)	N
623	chr9	5013962	5013963	rs116915373	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	9p24.1	JAK2	rs116915373-G	0.027215	2E-9		0.041505434	[0.028-0.055] unit increase	Affymetrix [93095623] (imputed)	N
623	chr9	5015900	5015901	rs10815146	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	9p24.1	JAK2	rs10815146-A	0.5055	2E-30		0.04194053	[0.035-0.049] unit decrease	Affymetrix [~ 2500000] (imputed)	N
623	chr9	5028920	5028921	rs62541534	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	9p24.1		rs62541534-?	NR	1E-37				NR [~ 8900000] (imputed)	N
623	chr9	5031850	5031851	rs116954921	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	9p24.1	JAK2	rs116954921-C	0.029955	2E-10		0.04178263	[0.029-0.055] unit increase	Affymetrix [93095623] (imputed)	N
623	chr9	5034274	5034275	rs11506660	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9p24.1	NR	rs11506660-C	0.25509	2E-10				Affymetrix, Illumina [19905671] (imputed)	N
623	chr9	5036321	5036322	rs116866937	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	9p24.1		rs116866937-A	0.975	4E-8				Affymetrix [10369434] (imputed)	N
623	chr9	5036321	5036322	rs116866937	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	9p24.1		rs116866937-A	0.975	6E-16				Affymetrix [10369434] (imputed)	N
623	chr9	5038596	5038599	rs58788809	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	9p24.1	JAK2	rs58788809-A	0.502654	1E-120		0.053099237	[0.049-0.058] unit decrease	Affymetrix [93095623] (imputed)	N
623	chr9	5038596	5038599	rs58788809	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	9p24.1	JAK2	rs58788809-A	0.502687	1E-112		0.05140148	[0.047-0.056] unit decrease	Affymetrix [93095623] (imputed)	N
623	chr9	5038596	5038599	rs58788809	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	9p24.1	JAK2	rs58788809-A	0.5026	6E-28		0.03999971	[0.033-0.047] unit decrease	Affymetrix [~ 2500000] (imputed)	N
623	chr9	5043687	5043688	rs59668095	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	9p24.1	JAK2	rs59668095-G	0.259077	2E-43		0.034923024	[0.03-0.04] unit increase	Affymetrix [93095623] (imputed)	N
623	chr9	5049091	5049092	rs62541556	34506852	Chang X	2021-09-07	J Allergy Clin Immunol	A genome-wide association meta-analysis identifies new Eosinophilic esophagitis loci.	Eosinophilic esophagitis	542 European ancestry cases, 7,146 European ancestry controls	NA	9p24.1	JAK2	rs62541556-T	0.251	4E-8		1.61	[1.39-1.87]	Illumina [11310926] (imputed)	N
623	chr9	5055750	5055751	rs776830350	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Platelet count	444,866 European ancestry individuals	NA	9p24.1		rs776830350-?	NR	5E-14		1.03452	[0.76-1.31] unit increase	NR [9800000] (imputed)	N
623	chr9	5059542	5059543	rs193181528	34469433	Ashvetiya T	2021-09-01	PLoS One	Identification of novel genetic susceptibility loci for thoracic and abdominal aortic aneurysms via genome-wide association study using the UK Biobank Cohort.	Abdominal aortic aneurysm	1,363 European, Indian, Caribbean, African ancestry cases, 27,260  European, Indian, Caribbean, African ancestry controls	NA	9p24.1		rs193181528-?	NR	3E-8		2.77633	[1.93-3.99]	NR [NR] (imputed)	N
623	chr9	5063295	5063296	rs12339666	25849990	Tapper W	2015-04-07	Nat Commun	Genetic variation at MECOM, TERT, JAK2 and HBS1L-MYB predisposes to myeloproliferative neoplasms.	Myeloproliferative neoplasms	524 European ancestry JAK2 negative cases, 2,674 European ancestry controls	1,383 European ancestry JAK2 negative cases, 4,609 European ancestry controls, 526 JAK2 negative cases, 5,506 controls	9p24.1	JAK2	rs12339666-T	0.26	1E-10		1.34	[1.23-1.47]	Affymetrix [2098039] (imputed)	N
623	chr9	5064192	5064193	rs16922576	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic disease (asthma, hay fever or eczema)	106,772 European ancestry cases, 239,773 European ancestry controls	83,335 cases, 34,934 controls	9p24.1	NR	rs16922576-C	NR	1E-7		1.032	NR	Affymetrix [15688218] (imputed)	N
623	chr9	5064192	5064193	rs16922576	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	9p24.1	JAK2	rs16922576-C	0.32	3E-10		1.036	[1.03-1.05]	Affymetrix, Illumina [8307659] (imputed)	N
623	chr9	5065749	5065750	rs12342421	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	9p24.1		rs12342421-?	NR	1E-11				NR [~ 8900000] (imputed)	N
623	chr9	5067831	5067832	rs73393498	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	9p24.1		rs73393498-?	NR	1E-16				NR [~ 8900000] (imputed)	N
623	chr9	5069836	5069837	rs7869668	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Platelet count	108,208 Japanese ancestry individuals	NA	9p24.1	NR	rs7869668-?	NR	2E-15		0.03425	[0.026-0.043] unit decrease novel	Illumina [6108953] (imputed)	N
623	chr9	5070830	5070831	rs10974944	19287384	Kilpivaara O	2009-03-15	Nat Genet	A germline JAK2 SNP is associated with predisposition to the development of JAK2(V617F)-positive myeloproliferative neoplasms.	Myeloproliferative neoplasms	324 European ancestry cases, 2,999 European ancestry controls	NA	9p24.1	JAK2	rs10974944-?	NR	4E-20		3.1	[2.40-4.00]	Affymetrix [62775]	N
623	chr9	5071048	5071049	rs10119004	35232999	Garcia-Etxebarria K	2022-03-01	Sci Rep	Local genetic variation of inflammatory bowel disease in Basque population and its effect in risk prediction.	Inflammatory bowel disease	498 European ancestry cases, 935 European ancestry controls	NA	9p24.1		rs10119004-G	0.543	8E-6		0.7		Illumina [5411567] (imputed)	N
623	chr9	5071048	5071049	rs10119004	35232999	Garcia-Etxebarria K	2022-03-01	Sci Rep	Local genetic variation of inflammatory bowel disease in Basque population and its effect in risk prediction.	Crohn's disease	284 European ancestry cases, 935 European ancestry controls	NA	9p24.1		rs10119004-G	0.543	2E-6		0.6		Illumina [5411261] (imputed)	N
623	chr9	5073288	5073289	rs10283730	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	9p24.1	JAK2	rs10283730-A	0.25241	2E-36		0.03209035	[0.027-0.037] unit increase	Affymetrix [93095623] (imputed)	N
623	chr9	5073769	5073770	rs77375493	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	9p24.1	JAK2	rs77375493-T	5.0E-4	1E-18		0.5328	[0.41-0.65] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
623	chr9	5073769	5073770	rs77375493	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	9p24.1	JAK2	rs77375493-T	5.0E-4	9E-14		0.4512	[0.33-0.57] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
623	chr9	5073769	5073770	rs77375493	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	9p24.1	JAK2	rs77375493-T	5.0E-4	1E-19		0.5576	[0.44-0.68] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
623	chr9	5073769	5073770	rs77375493	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	Total cholesterol levels	up to 237,050 European ancestry individuals, up to 16,935 African ancestry individuals, up to 30,468 South Asian ancestry individuals, up to 8,287 East Asian ancestry individuals, 5,084 Hispanic individuals	up to 286,268 European and unknown ancestry individuals	9p24.1	NR	rs77375493-T	NR	7E-14		0.3444075	[0.25-0.43] unit decrease	Illumina [242289]	N
623	chr9	5073769	5073770	rs77375493	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	Total cholesterol levels	up to 237,050 European ancestry individuals	NA	9p24.1	NR	rs77375493-T	0.0012	1E-10		0.31	unit decrease	Illumina [242289]	N
623	chr9	5073769	5073770	rs77375493	24777453	Auer PL	2014-04-28	Nat Genet	Rare and low-frequency coding variants in CXCR2 and other genes are associated with hematological traits.	Platelet count	24,814 European ancestry individuals	6,526 European ancestry individuals	9p24.1	JAK2	rs77375493-T	5.0E-4	3E-12		49.85	[35.84-63.86] unit increase	Illumina [183585]	N
623	chr9	5075627	5075628	rs10283564	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	9p24.1	JAK2	rs10283564-G	0.2514	1E-15		0.03291374	[0.025-0.041] unit increase	Affymetrix [~ 2500000] (imputed)	N
623	chr9	5075627	5075628	rs10283564	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	9p24.1	JAK2	rs10283564-G	0.2514	4E-16		0.03342383	[0.025-0.041] unit increase	Affymetrix [~ 2500000] (imputed)	N
623	chr9	5079247	5079248	rs149757596	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	9p24.1	AL161450.1, JAK2	rs149757596-C	0.002494	6E-36		0.2844065	[0.24-0.33] unit increase	Affymetrix [93095623] (imputed)	N
623	chr9	5079247	5079248	rs149757596	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	9p24.1	AL161450.1, JAK2	rs149757596-C	0.00249200000000005	8E-34		0.27551574	[0.23-0.32] unit increase	Affymetrix [93095623] (imputed)	N
623	chr9	5081827	5081828	rs150221602	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Red blood cell count	445,305 European ancestry individuals	NA	9p24.1		rs150221602-?	NR	2E-14		0.216241	[0.16-0.28] unit increase	NR [9800000] (imputed)	N
623	chr9	5081827	5081828	rs150221602	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Platelet count	444,866 European ancestry individuals	NA	9p24.1		rs150221602-?	NR	4E-55		0.443515	[0.39-0.5] unit increase	NR [9800000] (imputed)	N
623	chr9	5081827	5081828	rs150221602	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean platelet volume	445,364 European ancestry individuals	NA	9p24.1		rs150221602-?	NR	3E-16		0.216608	[0.16-0.27] unit decrease	NR [9800000] (imputed)	N
623	chr9	5081827	5081828	rs150221602	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Eosinophil counts	440,275 European ancestry individuals	NA	9p24.1		rs150221602-?	NR	3E-17		0.263135	[0.2-0.33] unit increase	NR [9800000] (imputed)	N
623	chr9	5081827	5081828	rs150221602	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	9p24.1	JAK2	rs150221602-C	0.00114800000000004	5E-9		0.20508103	[0.14-0.27] unit increase	Affymetrix [93095623] (imputed)	N
623	chr9	5081827	5081828	rs150221602	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	9p24.1	JAK2	rs150221602-C	0.00117500000000004	6E-24		0.35555643	[0.29-0.42] unit increase	Affymetrix [93095623] (imputed)	N
623	chr9	5081827	5081828	rs150221602	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	9p24.1	JAK2	rs150221602-C	0.00117500000000004	3E-28		0.3875998	[0.32-0.46] unit increase	Affymetrix [93095623] (imputed)	N
623	chr9	5081827	5081828	rs150221602	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	9p24.1	JAK2	rs150221602-C	0.00115200000000004	2E-13		0.25863042	[0.19-0.33] unit increase	Affymetrix [93095623] (imputed)	N
623	chr9	5081827	5081828	rs150221602	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	9p24.1	JAK2	rs150221602-C	0.00115200000000004	3E-14		0.26605737	[0.2-0.33] unit increase	Affymetrix [93095623] (imputed)	N
623	chr9	5081827	5081828	rs150221602	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	9p24.1	JAK2	rs150221602-C	0.0014	1E-13		0.4091	[0.3-0.52] unit increase	Affymetrix [~ 2500000] (imputed)	N
623	chr9	5081827	5081828	rs150221602	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	9p24.1	JAK2	rs150221602-C	0.0013	7E-18		0.4756509	[0.37-0.58] unit increase	Affymetrix [~ 2500000] (imputed)	N
623	chr9	5082332	5082333	rs7865719	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	9p24.1		rs7865719-A	0.512	6E-16				Affymetrix [10369434] (imputed)	N
623	chr9	5082332	5082333	rs7865719	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	9p24.1		rs7865719-A	0.512	1E-26				Affymetrix [10369434] (imputed)	N
623	chr9	5089769	5089770	rs202237966	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	9p24.1		rs202237966-A	7.51E-4	8E-9		0.221548	[0.15-0.3] unit decrease	Illumina [13479295] (imputed)	N
623	chr9	5089769	5089770	rs202237966	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	9p24.1	JAK2	rs202237966-?	NR	9E-9		0.32130665	[0.21-0.43] unit decrease	Illumina [27896057] (imputed)	N
623	chr9	5105372	5105373	rs117429320	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	9p24.1	JAK2	rs117429320-G	0.025421	1E-9		0.0488029	[0.036-0.062] unit increase	Affymetrix [93095623] (imputed)	N
623	chr9	5105372	5105373	rs117429320	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	9p24.1	JAK2	rs117429320-G	0.025431	1E-9		0.043223508	[0.029-0.057] unit increase	Affymetrix [93095623] (imputed)	N
624	chr9	5112287	5112288	rs3780378	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	9p24.1	RP11-39K24.7	rs3780378-T	0.4993	2E-10		0.0227039	[0.016-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
624	chr9	5112287	5112288	rs3780378	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	9p24.1	RP11-39K24.7	rs3780378-T	0.4994	5E-13		0.02570145	[0.019-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
624	chr9	5112287	5112288	rs3780378	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	9p24.1	RP11-39K24.7	rs3780378-T	0.4992	4E-11		0.02366018	[0.017-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
624	chr9	5114522	5114523	rs3780381	32518416	Dawoud AAZ	2020-06-10	Leukemia	Clonal myelopoiesis in the UK Biobank cohort: ASXL1 mutations are strongly associated with smoking.	Myeloid clonal hematopoiesis	1,166 cases, 30,892 controls	NA	9p24.1	NR	rs3780381-C	0.27	1E-7		1.274	NR	Affymetrix [265112]	N
624	chr9	5126342	5126343	rs41316003	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Platelet count	444,866 European ancestry individuals	NA	9p24.1		rs41316003-?	NR	1E-51		0.182111	[0.16-0.21] unit increase	NR [9800000] (imputed)	N
624	chr9	5126342	5126343	rs41316003	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Insulin-like growth factor 1 levels	435,516 European ancestry individuals	NA	9p24.1		rs41316003-?	NR	9E-11		0.0878743	[0.061-0.114] unit decrease	NR [9800000] (imputed)	N
624	chr9	5126342	5126343	rs41316003	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	9p24.1	NR	rs41316003-A	NR	2E-9		0.0961	[0.065-0.128] unit decrease	Affymetrix [9000000] (imputed)	N
624	chr9	5126342	5126343	rs41316003	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	9p24.1	JAK2	rs41316003-A	0.00582099999999997	1E-51		0.2230145	[0.19-0.25] unit increase	Affymetrix [93095623] (imputed)	N
624	chr9	5126342	5126343	rs41316003	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	9p24.1	JAK2	rs41316003-A	0.00582700000000003	1E-48		0.21586342	[0.19-0.24] unit increase	Affymetrix [93095623] (imputed)	N
624	chr9	5126342	5126343	rs41316003	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	9p24.1	JAK2	rs41316003-A	0.005	8E-10		0.170913	[0.12-0.23] unit increase	Affymetrix [~ 2500000] (imputed)	N
624	chr9	5126342	5126343	rs41316003	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	9p24.1	JAK2	rs41316003-A	0.005	2E-9		0.1653611	[0.11-0.22] unit increase	Affymetrix [~ 2500000] (imputed)	N
624	chr9	5140957	5140958	rs143639284	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	9p24.1	Intergenic	rs143639284-A	0.999	9E-7	(AA)	0.468	unit increase	Illumina [NR] (imputed)	N
624	chr9	5145266	5145267	rs77091928	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	9p24.1	INSL6	rs77091928-A	0.00492300000000001	5E-9		0.10128325	[0.067-0.135] unit increase	Affymetrix [93095623] (imputed)	N
624	chr9	5149249	5149250	rs75035022	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	9p24.1		rs75035022-C	0.98	3E-8				Affymetrix [10369434] (imputed)	N
624	chr9	5169599	5169600	rs145699582	26626624	Stuart PE	2015-11-28	Am J Hum Genet	Genome-wide Association Analysis of Psoriatic Arthritis and Cutaneous Psoriasis Reveals Differences in Their Genetic Architecture.	Psoriatic arthritis	1,946 European ancestry cases, 4,934 European ancestry controls	up to 2,883 European ancestry cases, up to 14,179 European ancestry controls	9p24.1	JAK2	rs145699582-T	NR	3E-7		3.84	NR	Illumina [11532644] (imputed)	N
624	chr9	5180143	5180144	rs143944808	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	9p24.1		rs143944808-?	NR	5E-8				Affymetrix [NR] (imputed)	N
624	chr9	5185580	5185581	rs144087410	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	9p24.1	INSL6	rs144087410-T	0.999	2E-7	(AA)	0.397	unit increase	Illumina [NR] (imputed)	N
624	chr9	5211190	5211191	rs72701684	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	9p24.1	NR	rs72701684-T	NR	3E-18		0.0494	[0.038-0.061] unit increase	Affymetrix [9000000] (imputed)	N
624	chr9	5213686	5213687	rs10975003	19915573	Asano K	2009-11-15	Nat Genet	A genome-wide association study identifies three new susceptibility loci for ulcerative colitis in the Japanese population.	Ulcerative colitis	376 Japanese ancestry cases, 934 Japanese ancestry controls	376 Japanese ancestry cases, 1,097 Japanese ancestry controls	9p24.1	INSL6, INSL4, JAK2	rs10975003-C	0.19	1E-6		1.34	[1.18-1.51]	Illumina [513923]	N
624	chr9	5214596	5214597	rs181908388	34469433	Ashvetiya T	2021-09-01	PLoS One	Identification of novel genetic susceptibility loci for thoracic and abdominal aortic aneurysms via genome-wide association study using the UK Biobank Cohort.	Abdominal aortic aneurysm	1,363 European, Indian, Caribbean, African ancestry cases, 27,260  European, Indian, Caribbean, African ancestry controls	NA	9p24.1		rs181908388-?	NR	2E-7		2.66282		NR [NR] (imputed)	N
625	chr9	5260078	5260079	rs1830610	26398853	Ye BD	2016-01-01	Inflamm Bowel Dis	Identification of Ten Additional Susceptibility Loci for Ulcerative Colitis Through Immunochip Analysis in Koreans.	Ulcerative colitis	705 Korean ancestry cases, 1,178 Korean ancestry controls	980 Korean ancestry cases, 2,694 Korean ancestry controls	9p24.1	JAK2	rs1830610-T	0.19	2E-9		1.35		Illumina [536821] (imputed)	N
625	chr9	5266199	5266200	rs62554837	32518416	Dawoud AAZ	2020-06-10	Leukemia	Clonal myelopoiesis in the UK Biobank cohort: ASXL1 mutations are strongly associated with smoking.	Myeloid clonal hematopoiesis	1,166 cases, 30,892 controls	NA	9p24.1	NR	rs62554837-T	0.1517	2E-7		1.321	NR	Affymetrix [265112]	N
625	chr9	5268510	5268511	rs150029471	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	9p24.1	Intergenic	rs150029471-G	NR	1E-6		0.365202	[0.22-0.51] unit decrease	Illumina [13520550] (imputed)	N
625	chr9	5354411	5354412	rs4740816	34437536	Akhtari FS	2021-08-26	PLoS Genet	High-throughput screening and genome-wide analyses of 44 anticancer drugs in the 1000 Genomes cell lines reveals an association of the NQO1 gene with the response of multiple anticancer drugs.	Response to paclitaxel	680 lymphoblastoid cell lines from Han Chinese ancestry, Japanese ancestry, Kenyan ancestry, Mexican ancestry, Tuscan ancestry, Yoruban ancestry, British ancestry, Columbian ancestry individuals	NA	9p24.1		rs4740816-?	NR	6E-7				Illumina [1510701]	N
626	chr9	5377114	5377115	rs3824435	28990359	Polimanti R	2017-10-09	Am J Med Genet B Neuropsychiatr Genet	Ancestry-specific and sex-specific risk alleles identified in a genome-wide gene-by-alcohol dependence interaction study of risky sexual behaviors.	Risky sexual behaviors in alcohol dependence	454 African American women individuals, 1,087 African American men individuals, 444 European ancestry women individuals, 992 European ancestry men individuals.	NA	9p24.1	PLGRKT	rs3824435-?	0.532	6E-8	(women)			Illumina [at least 550000] (imputed)	N
626	chr9	5387278	5387279	rs7028486	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	9p24.1	PLGRKT	rs7028486-C	0.301266	9E-10		0.06116547	[0.042-0.081] unit increase	Affymetrix [7288503] (imputed)	N
626	chr9	5410722	5410723	rs1535454	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	9p24.1	C9orf46	rs1535454-A	0.045	3E-6	(TG )	0.03	[NR] mg/dL increase	Illumina [899892]	N
626	chr9	5421233	5421234	rs74629033	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	9p24.1	PLGRKT	rs74629033-G	0.95	5E-6		0.116	[0.067-0.165] unit increase	Affymetrix, Illumina [7374092] (imputed)	N
626	chr9	5425846	5425847	rs10815220	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	9p24.1		rs10815220-G	NR	1E-9		0.0609	[0.041-0.081] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
626	chr9	5438434	5438435	rs911760	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hypothyroidism	30,155 European ancestry cases, 379,986 European ancestry controls, 1,114 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	9p24.1		rs911760-A	NR	2E-12		0.0879	[0.063-0.112] unit increase	Affymetrix, Illumina [25801083] (imputed)	N
626	chr9	5438434	5438435	rs911760	32581359	Saevarsdottir S	2020-06-24	Nature	FLT3 stop mutation increases FLT3 ligand level and risk of autoimmune thyroid disease.	Autoimmune thyroid disease	30,234 European ancestry cases, 724,172 European ancestry controls	NA	9p24.1	PLGRKT	rs911760-A	0.211	9E-12		1.08	[NR]	Affymetrix, Illumina [42900000] (imputed)	N
626	chr9	5440588	5440589	rs10739076	30566500	Day F	2018-12-19	PLoS Genet	Large-scale genome-wide meta-analysis of polycystic ovary syndrome suggests shared genetic architecture for different diagnosis criteria.	Polycystic ovary syndrome	10,074 European ancestry cases, 103,164 European ancestry controls	NA	9p24.1	PLGRKT	rs10739076-A	0.31	3E-8		0.1097	[0.071-0.148] unit increase	Illumina [> 10000000] (imputed)	N
626	chr9	5443675	5443676	rs77812015	33824429	Fjukstad KK	2021-04-06	Pharmacogenomics J	Genetic variants associated with cardiometabolic abnormalities during treatment with selective serotonin reuptake inhibitors: a genome-wide association study.	LDL levels x SSRI levels (escitalopram or citalopram) interaction in schizophrenia or bipolar disorder	181 European ancestry individuals	NA	9p24.1	PLGRKT	rs77812015-C	NR	6E-6		14.4129	[8.42-20.4] unit decrease	Illumina [NR] (imputed)	N
626	chr9	5447226	5447227	rs34477738	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	9p24.1		rs34477738-?	NR	5E-12				NR [~ 8900000] (imputed)	N
626	chr9	5459418	5459419	rs1411262	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CD274	5,366 Icelandic ancestry individuals	NA	9p24.1		rs1411262-T	0.2594	1E-56		0.331018	[0.29-0.37] unit decrease	Illumina [7506463] (imputed)	N
626	chr9	5459418	5459419	rs1411262	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	9p24.1	CD274	rs1411262-C	0.73640625	2E-29	(CD274, 5060_62_3)	0.31017646	[0.26-0.36] unit increase	Illumina [> 1000000] (imputed)	N
626	chr9	5482488	5482489	rs115613582	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental extreme longevity (95 years and older)	1,339 middle-aged British cases, 40,934 middle-aged British controls	NA	9p24.1	NR	rs115613582-?	NR	6E-6		0.01905	[0.011-0.027] unit decrease	Affymetrix [9658292] (imputed)	N
627	chr9	5506382	5506383	rs10975153	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PDCD1LG2	5,357 Icelandic ancestry individuals	NA	9p24.1		rs10975153-C	0.2073	1E-21		0.215634	[0.17-0.26] unit increase	Illumina [7506463] (imputed)	N
627	chr9	5510643	5510644	rs16923189	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PDCD1LG2	5,357 Icelandic ancestry individuals	NA	9p24.1		rs16923189-G	0.2856	6E-127		0.457062	[0.42-0.49] unit increase	Illumina [7506463] (imputed)	N
627	chr9	5510643	5510644	rs16923189	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	9p24.1	PDCD1LG2	rs16923189-A	0.70171875	3E-70	(PDCD1LG2, 3004_67_2)	0.45757204	[0.41-0.51] unit decrease	Illumina [> 1000000] (imputed)	N
627	chr9	5510643	5510644	rs16923189	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9p24.1	PDCD1LG2	rs16923189-G	0.298	8E-51	(Programmed cell death 1 ligand 2, PDCD1LG2.3004.67.2)	0.39	[0.33-0.45] unit increase	Affymetrix [10572788] (imputed)	N
627	chr9	5510643	5510644	rs16923189	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	9p24.1	PDCD1LG2	rs16923189-G	0.2801205	2E-26	(Programmed cell death 1 ligand 2)	0.5243	[0.43-0.62] unit increase	Affymetrix [509946]	N
627	chr9	5510837	5510837	rs113352172	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9p24.1	NR	rs113352172-TG	0.216	6E-33	(Programmed cell death 1 ligand 2, PDCD1LG2.3004.67.2)	0.36	[0.3-0.42] unit increase	Affymetrix [10572788] (imputed)	N
627	chr9	5538406	5538407	rs10975167	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	9p24.1	Intergenic	rs10975167-T	NR	8E-7	(between families)	4.928	unit increase	Affymetrix [up to 15107142] (imputed)	N
627	chr9	5551944	5551945	rs7869190	25742292	Aschebrook-Kilfoy B	2015-03-05	PLoS One	Genome-wide association study of parity in Bangladeshi women.	Number of pregnancies	1,686 Bangladeshi women	NA	9p24.1	NR	rs7869190-?		7E-6		0.32	unit decrease	Illumina [1211988] (imputed)	N
627	chr9	5557707	5557708	rs7854413	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PDCD1LG2	5,357 Icelandic ancestry individuals	NA	9p24.1		rs7854413-C	0.07143	2E-19		0.31675	[0.25-0.39] unit decrease	Illumina [7506463] (imputed)	N
627	chr9	5557707	5557708	rs7854413	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9p24.1	NR	rs7854413-C	0.092	5E-12	(Programmed cell death 1 ligand 2, PDCD1LG2.3004.67.2)	0.29	[0.21-0.37] unit decrease	Affymetrix [10572788] (imputed)	N
627	chr9	5570943	5570944	rs73641643	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9p24.1	NR	rs73641643-T	0.01045	2E-8	(PON1)	0.163	NR unit increase	Illumina [1671387] (imputed)	N
627	chr9	5605534	5605535	rs55850360	31235810	Fung K	2019-06-24	Sci Rep	Genome-wide association study identifies loci for arterial stiffness index in 127,121 UK Biobank participants.	Arterial stiffness index	127,121 European ancestry individuals	NA	9p24.1	KIAA1432	rs55850360-G	0.888	7E-7		0.031	[0.019-0.043] unit decrease	Affymetrix [~ 10446505] (imputed)	N
627	chr9	5626111	5626112	rs13283193	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Serum alkaline phosphatase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	9p24.1	PDCD1LG2, RIC1	rs13283193-?		4E-8		0.0237	[0.015-0.032] unit increase	Illumina [31500000] (imputed)	N
627	chr9	5629132	5629133	rs4471106	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	9p24.1	RIC1	rs4471106-A	0.29	3E-32		11.8	z-score increase	Affymetrix [4311822] (imputed)	N
627	chr9	5630343	5630344	rs10815254	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	9p24.1		rs10815254-T	NR	5E-46		0.0369	[0.032-0.042] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
628	chr9	5644554	5644555	rs7860397	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	9p24.1	NR	rs7860397-A	0.391481	3E-10		0.0201036	[0.014-0.026] unit increase	NR [19129689] (imputed)	N
628	chr9	5701185	5701186	rs13287168	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	L1-L4 bone mineral density x serum urate levels interaction	2,207 men, 2,354 women	NA		RIC1	rs13287168-?	NR	8E-6		0.14	[NR] unit decrease	Affymetrix [NR] (imputed)	N
628	chr9	5707663	5707663	rs552868666	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Smoking x traumatic event in childhood (sexually molested) interaction	127,766 European ancestry individuals	NA	9p24.1		rs552868666-?	NR	2E-8		0.9579	[0.62-1.29] unit increase	Affymetrix [NR] (imputed)	N
628	chr9	5731973	5731974	rs117233659	32438682	Mateos MK	2020-05-19	Cancers (Basel)	Genome-Wide Association Meta-Analysis of Single-Nucleotide Polymorphisms and Symptomatic Venous Thromboembolism during Therapy for Acute Lymphoblastic Leukemia and Lymphoma in Caucasian Children.	Childhood ALL/LBL (acute lymphoblastic leukemia/lymphoblastic lymphoma) treatment-related venous thromboembolism	92 European ancestry cases, 1,481 European ancestry controls	NA	9p24.1	RIC1	rs117233659-?		4E-6		9.090909	[3.57-25]	Illumina [NR] (imputed)	N
628	chr9	5737691	5737692	rs10815276	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	9p24.1	NR	rs10815276-G	0.45668200000000003	3E-14		0.00614301	[0.0045-0.0078] unit increase	Affymetrix [16582909] (imputed)	N
628	chr9	5737691	5737692	rs10815276	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	9p24.1	NR	rs10815276-G	0.456759	2E-10		0.00768104	[0.0052-0.0101] unit increase	Affymetrix [16585854] (imputed)	N
628	chr9	5737691	5737692	rs10815276	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	9p24.1	NR	rs10815276-G	0.45668200000000003	1E-13		0.00675881	[0.0049-0.0086] unit increase	Affymetrix [16582965] (imputed)	N
628	chr9	5737691	5737692	rs10815276	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	9p24.1	NR	rs10815276-G	0.456759	2E-10		0.0089276	[0.0061-0.0117] unit increase	Affymetrix [16585866] (imputed)	N
628	chr9	5765647	5765648	rs41280733	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	9p24.1	NR	rs41280733-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
629	chr9	5774660	5774661	rs10975277	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Respiratory diseases	approximately 459,000 European ancestry individuals	NA	9p24.1		rs10975277-?	NR	7E-8				NR [~ 8900000] (imputed)	N
629	chr9	5783497	5783498	rs2093657	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	9p24.1	ERMP1	rs2093657-C	0.3377	6E-11		1.055	NR	Affymetrix [9154080] (imputed)	N
629	chr9	5816824	5816825	rs72693791	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	9p24.1	NR	rs72693791-A	NR	4E-12		0.0298	[0.021-0.038] unit increase	Affymetrix [9000000] (imputed)	N
629	chr9	5835361	5835362	rs13300893	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Smoking x traumatic event in childhood (sexually molested) interaction	127,766 European ancestry individuals	NA	9p24.1		rs13300893-?	NR	3E-8		0.9404	[0.61-1.27] unit increase	Affymetrix [NR] (imputed)	N
629	chr9	5840748	5840749	rs12379291	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	9p24.1	NR	rs12379291-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
629	chr9	5840748	5840749	rs12379291	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	9p24.1	NR	rs12379291-?	NR	3E-10				Affymetrix [~ 8270000] (imputed)	N
629	chr9	5841437	5841438	rs7047575	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	9p24.1		rs7047575-G	0.469	5E-14				Affymetrix [10369434] (imputed)	N
629	chr9	5841437	5841438	rs7047575	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	9p24.1	NR	rs7047575-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
629	chr9	5843614	5843615	rs4075225	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	9p24.1		rs4075225-?	NR	4E-12				NR [~ 8900000] (imputed)	N
629	chr9	5844349	5844350	rs541845645	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-hip ratio	1,254 whole genome sequenced European ancestry individuals, 3,071 whole genome sequenced individuals, 29,723 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,053 Mylopotamos (founder/genetic isolate) individuals, 879 Pomak (founder/genetic isolate) individuals	206,053 European ancestry individuals	9p24.1	ERMP1	rs541845645-T	0.0016	4E-6		0.7696	[0.44-1.1] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
629	chr9	5845104	5845105	rs10758710	33328473	Ahluwalia TS	2020-12-16	Nat Commun	FUT2-ABO epistasis increases the risk of early childhood asthma and Streptococcus pneumoniae respiratory illnesses.	Childhood asthma with severe exacerbations	2,866 European ancestry cases,  65,415 European ancestry controls	NA	9p24.1	NR	rs10758710-T	NR	3E-9		0.1704	[0.11-0.23] unit increase	Illumina [up to 525976] (imputed)	N
629	chr9	5850374	5850375	rs58029167	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	9p24.1	ERMP1, KIAA1432, KIAA2026, MIR4665, MLANA, RANBP6	rs58029167-G	0.272693	1E-15		1.0572529	[1.04-1.07]	Affymetrix [8274727] (imputed)	N
629	chr9	5850374	5850375	rs58029167	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	9p24.1		rs58029167-?	NR	6E-8				NR [~ 8900000] (imputed)	N
629	chr9	5866924	5866925	rs66632892	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	9p24.1	NR	rs66632892-?	NR	4E-13				Affymetrix [~ 8270000] (imputed)	N
629	chr9	5875255	5875256	rs7862229	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	9p24.1	NR	rs7862229-?	NR	1E-9				Affymetrix [NR]	N
629	chr9	5877295	5877295	rs140348140	27005778	Kettunen J	2016-03-23	Nat Commun	Genome-wide study for circulating metabolites identifies 62 loci and reveals novel systemic effects of LPA.	Metabolite levels (small molecules and protein measures)	2,118 Erasmus Rucphen (founder/genetic isolate), 22,807 European ancestry individuals	NA	9p24.1	GLDC	rs140348140-TA	0.05	4E-40	(Glycine)	0.33	[0.27-0.39] unit increase	Affymetrix, Illumina, Perlegen [12133295] (imputed)	N
629	chr9	5881363	5881364	rs4740829	26528553	Davenport ER	2015-11-03	PLoS One	Genome-Wide Association Studies of the Human Gut Microbiota.	Gut microbiome composition (winter)	93 Hutterite individuals	NA	9p24.1	NR	rs4740829-?		2E-6	(genus_Bifidobacterium)	0.7118647	[0.43-0.99] unit increase	Affymetrix [211319]	N
629	chr9	5882400	5882401	rs10758715	34212547	An J	2021-07-01	Allergy Asthma Immunol Res	Genome-Wide Association Study of Korean Asthmatics: A Comparison With UK Asthmatics.	Adult asthma	1,386 Korean ancestry cases, 5,205 Korean ancestry controls	NA	9p24.1		rs10758715-C	0.25	4E-6		0.79	[0.71-0.87]	Affymetrix [4922160] (imputed)	N
629	chr9	5887073	5887074	rs10815302	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	9p24.1	KIAA2026	rs10815302-?	NR	6E-10		1.3620267	NR	Affymetrix [9154080] (imputed)	N
629	chr9	5888193	5888194	rs75557055	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	9p24.1	NR	rs75557055-?	NR	8E-9				Affymetrix [~ 8270000] (imputed)	N
629	chr9	5893860	5893861	rs2150702	22190364	Patsopoulos NA	2011-12-01	Ann Neurol	Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.	Multiple sclerosis	5,545 European ancestry cases, 12,153 European ancestry controls	NA	9p24.1	MLANA	rs2150702-G	0.49	3E-8		1.16	[NR]	Affymetrix, Illumina [2529394]	N
629	chr9	5893906	5893907	rs143391176	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Blonde (UKB data field 1747_1)	51,424 European ancestry cases, 403,740 European ancestry controls	NA	9p24.1		rs143391176-T	0.007564	1E-13		0.3	[0.22-0.38] unit decrease	NR [11842647] (imputed)	N
629	chr9	5896160	5896161	rs7037587	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	9p24.1		rs7037587-?	NR	2E-13				NR [~ 8900000] (imputed)	N
630	chr9	5950582	5950583	rs115053934	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	9p24.1	NR	rs115053934-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
630	chr9	5950671	5950672	rs117091894	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Hippocampal volume in mild cognitive impairment	581 European ancestry mild cognitive impairment cases	NA	9p24.1	AK4P4, MLANA, MIR4665, RANBP6	rs117091894-T	0.025	3E-7		1.18	[0.73-1.63] unit decrease	Illumina [7938386] (imputed)	N
630	chr9	5955140	5955141	rs10815323	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	9p24.1	KIAA2026	rs10815323-A	0.7963	3E-12		0.0165	[0.012-0.021] unit decrease	Affymetrix [18391927] (imputed)	N
630	chr9	5956007	5956008	rs10975370	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	9p24.1	NR	rs10975370-G	0.2043	3E-6	(EA)	0.0356	[0.021-0.05] unit increase	Illumina [~ 11800000] (imputed)	N
630	chr9	5966312	5966313	rs78728108	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	9p24.1		rs78728108-T	0.954	2E-19				Affymetrix [10369434] (imputed)	N
630	chr9	5972758	5972759	rs139863644	25839716	Ng E	2015-04-02	Environ Res	Genome-wide association study of plasma levels of polychlorinated biphenyls disclose an association with the CYP2B6 gene in a population-based sample.	Polychlorinated biphenyl levels	922 European ancestry individuals	NA	9p24.1	NR	rs139863644-?		3E-7	(PCB189)	1.23	[0.76-1.7] unit increase	Illumina [8736858] (imputed)	N
631	chr9	6030916	6030917	rs419595	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	9p24.1		rs419595-?	NR	9E-12				NR [~ 8900000] (imputed)	N
631	chr9	6033277	6033278	rs12378118	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal cancer	978 Austrian ancestry colorectal cancer cases, 636 Austrian ancestry advanced colorectal adenoma cases, 4,294 European ancestry controls	NA	9p24.1	Intergenic	rs12378118-?		8E-6		1.3142331	[NR]	Affymetrix [492217] (imputed)	N
631	chr9	6033725	6033726	rs191605295	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	9p24.1		rs191605295-?	NR	3E-21				NR [~ 8900000] (imputed)	N
631	chr9	6043592	6043593	rs343471	33002439	Jin G	2020-10-01	Lancet Oncol	Genetic risk, incident gastric cancer, and healthy lifestyle: a meta-analysis of genome-wide association studies and prospective cohort study.	Gastric cancer	10,254 Han Chinese ancestry cases, 10,914 Han Chinese ancestry controls	NA	9p24.1	NR	rs343471-T	0.83	3E-6		1.15	NR	Affymetrix, Illumina [6957974] (imputed)	N
631	chr9	6047764	6047765	rs62557312	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma onset (childhood vs adult)	13,962 European ancestry childhood onset cases, 14,873 European ancestry adult onset cases	31,002 European ancestry childhood onset cases, 16,297 European ancestry adult onset cases	9p24.1	RANBP6, IL33	rs62557312-C	0.819	4E-12		1.098	[1.07-1.12]	Affymetrix [9000000] (imputed)	N
631	chr9	6047764	6047765	rs62557312	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (adult onset)	26,582 European ancestry cases, 300,671 European ancestry controls	16,297 European ancestry cases, 217,711 European ancestry controls	9p24.1	RANBP6, IL33	rs62557312-?	NR	8E-20		1.085	[1.07-1.1]	Affymetrix [9000000] (imputed)	N
631	chr9	6047764	6047765	rs62557312	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	9p24.1	RANBP6, IL33	rs62557312-C	NR	3E-43		1.13	[1.11-1.15]	Affymetrix [9000000] (imputed)	N
631	chr9	6049842	6049843	rs10975413	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	9p24.1	NR	rs10975413-?	NR	2E-21				Affymetrix [~ 8270000] (imputed)	N
631	chr9	6049842	6049843	rs10975413	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	9p24.1	NR	rs10975413-?	NR	8E-18				Affymetrix [~ 8270000] (imputed)	N
631	chr9	6051398	6051399	rs343478	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	9p24.1	NR	rs343478-G	0.5549	3E-10		1.038961	[1.03-1.05]	Affymetrix [15688218] (imputed)	N
631	chr9	6051398	6051399	rs343478	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	9p24.1	NR	rs343478-?	NR	2E-23	(conditional)			Affymetrix [15688218] (imputed)	N
631	chr9	6051398	6051399	rs343478	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	9p24.1	RANBP6, IL33	rs343478-G	0.52	3E-10		1.033	[1.02-1.04]	Affymetrix, Illumina [8307659] (imputed)	N
631	chr9	6051923	6051924	rs10975416	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	9p24.1	IL33, KIAA2026, MIR4665, MLANA, RANBP6, TPD52L3	rs10975416-T	0.812809	5E-36		1.1040956	[1.09-1.12]	Affymetrix [8274727] (imputed)	N
631	chr9	6068076	6068077	rs343496	24388013	Ferreira MA	2013-12-30	J Allergy Clin Immunol	Genome-wide association analysis identifies 11 risk variants associated with the asthma with hay fever phenotype.	Asthma and hay fever	6,685 European ancestry cases, 14,091 European ancestry controls	878 European ancestry cases, 2,455 European ancestry controls	9p24.1	RANBP6	rs343496-T		2E-6		1.1351	[1.08-1.19]	Illumina [up to 4972397] (imputed)	N
631	chr9	6072596	6072597	rs343476	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	9p24.1	NR	rs343476-?	NR	1E-23				Affymetrix [~ 8270000] (imputed)	N
631	chr9	6074935	6074936	rs343473	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	9p24.1		rs343473-?	NR	1E-10				NR [~ 8900000] (imputed)	N
631	chr9	6076101	6076102	rs4742151	31959851	Olafsdottir TA	2020-01-20	Nat Commun	Eighty-eight variants highlight the role of T cell regulation and airway remodeling in asthma pathogenesis.	Asthma	16,247 European ancestry cases, 346,486 European ancestry controls, 52,942 cases, 355,713 controls	NA	9p24.1	RANBP6, KIAA2026, MIR4665, IL33, MLANA, ERMP1	rs4742151-A	0.65761	2E-15		1.0548	[1.04-1.07]	Affymetrix [32463443] (imputed)	N
631	chr9	6078613	6078614	rs371454	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	9p24.1	NR	rs371454-?	NR	3E-37				Affymetrix [~ 8270000] (imputed)	N
631	chr9	6078778	6078779	rs13299380	30837465	Wittemans LBL	2019-03-05	Nat Commun	Assessing the causal association of glycine with risk of cardio-metabolic diseases.	Glycine levels	80,003 European ancestry individuals	NA	9p24.1	NR	rs13299380-T	0.0534	4E-11	(conditional)			Affymetrix, Illumina [NR] (imputed)	N
631	chr9	6079481	6079482	rs183831772	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	9p24.1	NR	rs183831772-C	0.9996	1E-15		0.431788	[0.33-0.54] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
631	chr9	6081297	6081298	rs2150968	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (glucocorticoids)	17,352 European ancestry cases, 188,348 European ancestry controls	NA	9p24.1	RP11-218I7.2	rs2150968-A	0.310387	1E-10		0.0782627	[0.055-0.102] unit decrease	Affymetrix [7288503] (imputed)	N
631	chr9	6081297	6081298	rs2150968	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (adrenergics, inhalants)	28,880 European ancestry cases, 147,565 European ancestry controls	NA	9p24.1	RP11-218I7.2	rs2150968-A	0.309265	7E-15		0.07603904	[0.057-0.095] unit decrease	Affymetrix [7288503] (imputed)	N
631	chr9	6081803	6081804	rs340934	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma onset (childhood vs adult)	13,962 European ancestry childhood onset cases, 14,873 European ancestry adult onset cases	31,002 European ancestry childhood onset cases, 16,297 European ancestry adult onset cases	9p24.1	RANBP6, IL33	rs340934-T	0.806	1E-14		1.105	[1.08-1.13]	Affymetrix [9000000] (imputed)	N
631	chr9	6081803	6081804	rs340934	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	9p24.1	RANBP6, IL33	rs340934-?	NR	3E-62		1.167	[1.15-1.18]	Affymetrix [9000000] (imputed)	N
631	chr9	6081803	6081804	rs340934	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	9p24.1	RANBP6, IL33	rs340934-T	NR	5E-41		1.122	[1.1-1.14]	Affymetrix [9000000] (imputed)	N
631	chr9	6085077	6085078	rs340933	33328473	Ahluwalia TS	2020-12-16	Nat Commun	FUT2-ABO epistasis increases the risk of early childhood asthma and Streptococcus pneumoniae respiratory illnesses.	Childhood asthma with severe exacerbations	2,866 European ancestry cases,  65,415 European ancestry controls	NA	9p24.1	IL33	rs340933-G	NR	2E-13		1.37	[1.26-1.49]	Illumina [up to 525976] (imputed)	N
631	chr9	6102647	6102648	rs71503800	31070104	Jia Q	2019-05-09	J Am Heart Assoc	Genetic Determinants of Circulating Glycine Levels and Risk of Coronary Artery Disease.	Glycine levels	30,118 European ancestry individuals	NA	9p24.1	GLDC	rs71503800-T	0.048942	8E-121		0.455393	[0.42-0.49] unit increase	Affymetrix, Illumina [7487927] (imputed)	N
631	chr9	6102647	6102648	rs71503800	31070104	Jia Q	2019-05-09	J Am Heart Assoc	Genetic Determinants of Circulating Glycine Levels and Risk of Coronary Artery Disease.	Glycine levels	19,112 European ancestry male individuals	NA	9p24.1	GLDC	rs71503800-T	0.048942	3E-85		0.465484	[0.42-0.51] unit increase	Affymetrix, Illumina [7487927] (imputed)	N
631	chr9	6102647	6102648	rs71503800	31070104	Jia Q	2019-05-09	J Am Heart Assoc	Genetic Determinants of Circulating Glycine Levels and Risk of Coronary Artery Disease.	Glycine levels	11,006 European ancestry female individuals	NA	9p24.1	GLDC	rs71503800-T	0.048942	1E-42		0.446134	[0.38-0.51] unit increase	Affymetrix, Illumina [7487927] (imputed)	N
631	chr9	6142156	6142157	rs544253	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	9p24.1	NR	rs544253-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
631	chr9	6142156	6142157	rs544253	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	9p24.1	NR	rs544253-?	NR	1E-10				Affymetrix [~ 8270000] (imputed)	N
631	chr9	6142947	6142948	rs413382	27130862	Sarnowski C	2016-04-06	J Allergy Clin Immunol	Identification of a new locus at 16q12 associated with time to asthma onset.	Asthma (time to onset)	5,462 European ancestry cases, 8,424 European ancestry controls	NA	9p24.1	IL33	rs413382-A	0.8	6E-8		1.15	[1.08-1.22]	Illumina [2387926] (imputed)	N
631	chr9	6150621	6150622	rs111286410	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9p24.1	NR	rs111286410-C	0.01045	9E-9	(HNRNPH3)	0.0835	NR unit increase	Illumina [1671387] (imputed)	N
631	chr9	6159192	6159193	rs117457252	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	9p24.1		rs117457252-T	0.945	2E-11				Affymetrix [10369434] (imputed)	N
632	chr9	6169382	6169383	rs117248841	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	9p24.1	NR	rs117248841-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
632	chr9	6172379	6172380	rs7032572	23817569	Hinds DA	2013-06-30	Nat Genet	A genome-wide association meta-analysis of self-reported allergy identifies shared and allergy-specific susceptibility loci.	Self-reported allergy	53,862 European ancestry individuals	NA	9p24.1	RANBP6, IL33	rs7032572-G	0.1665	2E-9		0.1135	[0.077-0.15] unit increase	Illumina [2400000] (imputed)	N
632	chr9	6175521	6175522	rs72699185	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	9p24.1	NR	rs72699185-?	NR	6E-9				Affymetrix [~ 8270000] (imputed)	N
632	chr9	6175521	6175522	rs72699185	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	9p24.1	NR	rs72699185-?	NR	1E-10				Affymetrix [~ 8270000] (imputed)	N
632	chr9	6175854	6175855	rs72699186	24388013	Ferreira MA	2013-12-30	J Allergy Clin Immunol	Genome-wide association analysis identifies 11 risk variants associated with the asthma with hay fever phenotype.	Asthma and hay fever	6,685 European ancestry cases, 14,091 European ancestry controls	878 European ancestry cases, 2,455 European ancestry controls	9p24.1	IL33	rs72699186-T	0.15	2E-9		1.26	[1.16-1.35]	Illumina [up to 4972397] (imputed)	N
632	chr9	6176870	6176871	rs72699188	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	9p24.1	NR	rs72699188-?	NR	1E-8	(conditional)			Affymetrix [15688218] (imputed)	N
632	chr9	6177452	6177453	rs9775039	30013184	Waage J	2018-07-16	Nat Genet	Genome-wide association and HLA fine-mapping studies identify risk loci and genetic pathways underlying allergic rhinitis.	Allergic rhinitis	59,762 European and unknown ancestry cases, 152,358 European and unknown ancestry controls	60,720 European ancestry cases, 618,527 European ancestry controls	9p24.1	IL33, RANBP6	rs9775039-A	0.1642	2E-14		1.08	[1.06-1.10]	Affymetrix, Illumina, Perlegen [16531985] (imputed)	N
632	chr9	6177452	6177453	rs9775039	29785011	Zhu Z	2018-05-21	Nat Genet	A genome-wide cross-trait analysis from UK Biobank highlights the shared genetic architecture of asthma and allergic diseases.	Asthma or allergic disease (pleiotropy)	14,085 European asthma cases, 25,685 European ancestry allergic diseases cases, 76,768 European ancestry controls	NA	9p24.1	GLDC, IL33, TPD52L3, UHRF2	rs9775039-?	NR	4E-22		1.18		NR [74888535] (imputed)	N
632	chr9	6177452	6177453	rs9775039	29785011	Zhu Z	2018-05-21	Nat Genet	A genome-wide cross-trait analysis from UK Biobank highlights the shared genetic architecture of asthma and allergic diseases.	Asthma	14,085 European ancestry cases, 76,768 European ancestry controls	10,365 cases, 16,110 controls	9p24.1	IL33	rs9775039-?	NR	7E-23		0.168054	[0.13-0.2] unit increase	Affymetrix [74888535] (imputed)	N
632	chr9	6181524	6181525	rs4529511	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Chronic sinus infection	5,291 European ancestry cases, 79,622 European ancestry controls	NA	9p24.1	NR	rs4529511-?	NR	2E-7		0.1758	[0.11-0.24] unit increase	Illumina [at least 560000] (imputed)	N
632	chr9	6187131	6187132	rs76962799	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	9p24.1		rs76962799-A	0.038389	4E-14		0.04610359	[0.034-0.058] unit increase	Affymetrix [93095623] (imputed)	N
632	chr9	6187131	6187132	rs76962799	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	9p24.1	NR	rs76962799-?	NR	5E-15				Affymetrix [~ 8270000] (imputed)	N
632	chr9	6187131	6187132	rs76962799	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	9p24.1	NR	rs76962799-?	NR	1E-26				Affymetrix [~ 8270000] (imputed)	N
632	chr9	6187131	6187132	rs76962799	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	9p24.1	NR	rs76962799-?	NR	3E-23				Affymetrix [~ 8270000] (imputed)	N
632	chr9	6187131	6187132	rs76962799	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	9p24.1	NR	rs76962799-?	NR	6E-15				Affymetrix [~ 8270000] (imputed)	N
632	chr9	6187131	6187132	rs76962799	29785011	Zhu Z	2018-05-21	Nat Genet	A genome-wide cross-trait analysis from UK Biobank highlights the shared genetic architecture of asthma and allergic diseases.	Allergic disease (asthma, hay fever or eczema)	25,685 European ancestry allergic diseases cases, 76,768 European ancestry controls	NA	9p24.1	IL33, KIAA2026, MIR4665, RANBP6, TPD52L3	rs76962799-?	NR	4E-8		1.15	[1.09-1.21]	Affymetrix [74888535] (imputed)	N
632	chr9	6190075	6190076	rs1342326	33328473	Ahluwalia TS	2020-12-16	Nat Commun	FUT2-ABO epistasis increases the risk of early childhood asthma and Streptococcus pneumoniae respiratory illnesses.	Childhood asthma with severe exacerbations	2,866 European ancestry cases,  65,415 European ancestry controls	NA	9p24.1	IL33	rs1342326-C	NR	2E-13		1.31	[1.22-1.40]	Illumina [up to 525976] (imputed)	N
632	chr9	6190075	6190076	rs1342326	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	9p24.1		rs1342326-?	NR	5E-28				NR [~ 8900000] (imputed)	N
632	chr9	6190075	6190076	rs1342326	20860503	Moffatt MF	2010-09-23	N Engl J Med	A large-scale, consortium-based genomewide association study of asthma.	Asthma	10,365 cases, 16,110 controls	NA	9p24.1	IL33	rs1342326-C	0.16	9E-10		1.2	[1.13-1.28]	Illumina [582892]	N
632	chr9	6192795	6192796	rs2095044	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antihistamines for systemic use)	13,984 European ancestry cases, 137,652 European ancestry controls, 10,163 East Asian ancestry cases, 168,563 East Asian ancestry controls	NA	9p24.1		rs2095044-C	NR	6E-9		0.0771	[0.051-0.103] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
632	chr9	6192795	6192796	rs2095044	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (antihistamines for systemic use)	13,984 European ancestry cases, 137,652 European ancestry controls	NA	9p24.1	IL33	rs2095044-T	0.257651	3E-9		0.08532143	[0.057-0.113] unit increase	Affymetrix [7288503] (imputed)	N
632	chr9	6192795	6192796	rs2095044	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	9p24.1		rs2095044-?	NR	1E-300				NR [~ 8900000] (imputed)	N
632	chr9	6193454	6193455	rs2381416	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	9p24.1	RP11-575C20.1	rs2381416-A	0.7371	2E-101		0.08648321	[0.079-0.094] unit decrease	Affymetrix [~ 2500000] (imputed)	N
632	chr9	6193454	6193455	rs2381416	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	9p24.1	RP11-575C20.1	rs2381416-A	0.737	1E-89		0.08134858	[0.073-0.089] unit increase	Affymetrix [~ 2500000] (imputed)	N
632	chr9	6193454	6193455	rs2381416	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	9p24.1	RP11-575C20.1	rs2381416-A	0.737	4E-117		0.09280104	[0.085-0.101] unit decrease	Affymetrix [~ 2500000] (imputed)	N
632	chr9	6193454	6193455	rs2381416	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	9p24.1	RP11-575C20.1	rs2381416-A	0.737	2E-103		0.08754761	[0.08-0.095] unit decrease	Affymetrix [~ 2500000] (imputed)	N
632	chr9	6193454	6193455	rs2381416	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	9p24.1	RP11-575C20.1	rs2381416-A	0.737	2E-114		0.09179707	[0.084-0.1] unit decrease	Affymetrix [~ 2500000] (imputed)	N
632	chr9	6193454	6193455	rs2381416	21804549	Torgerson DG	2011-07-31	Nat Genet	Meta-analysis of genome-wide association studies of asthma in ethnically diverse North American populations.	Asthma	2,088 European ancestry cases, 1,612 African American and African Caribbean cases, 1,688 Hispanic cases	2,727 European ancestry cases, 2,147 African American and African Caribbean cases, 2,299 Hispanic cases	9p24.1	IL33	rs2381416-?	NR	2E-12				Affymetrix, Illumina [> 2000000] (imputed)	N
632	chr9	6197376	6197377	rs10975479	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	9p24.1	RP11-575C20.1	rs10975479-G	0.1648	3E-79		0.09060279	[0.081-0.1] unit decrease	Affymetrix [~ 2500000] (imputed)	N
632	chr9	6197391	6197392	rs1888909	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Nasal polyps	5,093 European ancestry cases, 444,966 European ancestry controls, 160 East Asian ancestry cases, 151,846 East Asian ancestry controls	NA	9p24.1		rs1888909-C	NR	1E-39		0.3161	[0.27-0.36] unit decrease	Affymetrix, Illumina [25837843] (imputed)	N
632	chr9	6197391	6197392	rs1888909	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	93,063 East Asian ancestry individuals	NA	9p24.1		rs1888909-C	0.969523	3E-9		0.0762913	[0.051-0.101] unit decrease	Illumina [13470073] (imputed)	N
632	chr9	6197391	6197392	rs1888909	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	9p24.1		rs1888909-T	0.256	9E-154				Affymetrix [10369434] (imputed)	N
632	chr9	6197391	6197392	rs1888909	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	9p24.1	RP11-575C20.1	rs1888909-C	0.744298	4E-255		0.08975637	[0.085-0.095] unit decrease	Affymetrix [93095623] (imputed)	N
632	chr9	6197391	6197392	rs1888909	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	9p24.1	RP11-575C20.1	rs1888909-C	0.744314	4E-229		0.08715122	[0.082-0.092] unit decrease	Affymetrix [93095623] (imputed)	N
632	chr9	6197391	6197392	rs1888909	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9p24.1	NR	rs1888909-C	0.773068	1E-395				Affymetrix, Illumina [19872809] (imputed)	N
632	chr9	6197391	6197392	rs1888909	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	9p24.1	NR	rs1888909-C	0.744354	3E-384		0.095262	[0.091-0.1] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
632	chr9	6197391	6197392	rs1888909	30643255	Kristjansson RP	2019-01-14	Nat Genet	A loss-of-function variant in ALOX15 protects against nasal polyps and chronic rhinosinusitis.	Nasal polyps	86 European ancestry whole-genome sequenced cases, 4,280 European ancestry cases, 13,941 European ancestry whole-genome sequenced controls, 700,740 European ancestry controls	NA	9p24.1	IL33	rs1888909-T	0.253	7E-32		1.34	[1.27-1.40]	Affymetrix, Illumina [up to 37123566] (imputed)	N
632	chr9	6197391	6197392	rs1888909	30643255	Kristjansson RP	2019-01-14	Nat Genet	A loss-of-function variant in ALOX15 protects against nasal polyps and chronic rhinosinusitis.	Chronic rhinosinusitis	251 European ancestry whole-genome sequenced cases, 5,357 European ancestry cases, 13,957 European ancestry whole-genome sequenced controls, 746,129 European ancestry controls	NA	9p24.1	IL33	rs1888909-T	0.253	6E-7		1.12	(1.07-1.18)	Affymetrix, Illumina [up to 37123566] (imputed)	N
632	chr9	6198893	6198894	rs79852653	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9p24.1	NR	rs79852653-T	0.0122	2E-8	(CYP2A6)	0.7704	NR unit increase	Illumina [1671387] (imputed)	N
632	chr9	6201162	6201163	rs1929995	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic sinusitis	7,529 European ancestry cases, 444,966 European ancestry controls, 4,617 East Asian ancestry cases, 152,226 East Asian ancestry controls	NA	9p24.1		rs1929995-C	NR	3E-9		0.1375	[0.092-0.183] unit increase	Affymetrix, Illumina [25838895] (imputed)	N
632	chr9	6208029	6208030	rs144829310	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	9p24.1	NR	rs144829310-T	0.1623	4E-25		1.086	[1.07-1.102]	Affymetrix [15688218] (imputed)	N
632	chr9	6208029	6208030	rs144829310	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic disease (asthma, hay fever or eczema)	106,772 European ancestry cases, 239,773 European ancestry controls	83,335 cases, 34,934 controls	9p24.1	NR	rs144829310-T	0.1623	2E-37		1.098	[1.083-1.113]	Affymetrix [15688218] (imputed)	N
632	chr9	6208029	6208030	rs144829310	30552067	Shrine N	2018-12-11	Lancet Respir Med	Moderate-to-severe asthma in individuals of European ancestry: a genome-wide association study.	Asthma (moderate or severe)	5,135 European ancestry cases, 25,675 European ancestry controls	5,414 European ancestry cases, 21,471 European ancestry controls	9p24.1	IL33	rs144829310-T	0.164	2E-20		1.21	[1.16-1.26]	Affymetrix [33771858] (imputed)	N
632	chr9	6208029	6208030	rs144829310	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	9p24.1	RANBP6, IL33	rs144829310-T	0.16	1E-35		1.09	[1.08-1.1]	Affymetrix, Illumina [8307659] (imputed)	N
632	chr9	6208029	6208030	rs144829310	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Asthma	28,399 European ancestry cases, 128,843 European ancestry controls	NA	9p24.1	RANBP6, IL33	rs144829310-?	NR	1E-31		1.165	[1.136-1.195]	Illumina [13747813] (imputed)	N
632	chr9	6209696	6209697	rs992969	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pediatric asthma	27,712 European ancestry cases, 411,131 European ancestry controls, 547 East Asian ancestry cases, 161,803 East Asian ancestry controls	NA	9p24.1		rs992969-G	NR	9E-28		0.1173	[0.096-0.138] unit decrease	Affymetrix, Illumina [25832605] (imputed)	N
632	chr9	6209696	6209697	rs992969	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (glucocorticoids)	17,352 European ancestry cases, 188,348 European ancestry controls, 13,102 East Asian ancestry cases, 165,624 East Asian ancestry controls	NA	9p24.1		rs992969-G	NR	8E-27		0.131	[0.11-0.15] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
632	chr9	6209696	6209697	rs992969	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (adrenergics, inhalants)	28,880 European ancestry cases, 147,565 European ancestry controls, 5,880 East Asian ancestry cases, 172,846 East Asian ancestry controls	NA	9p24.1		rs992969-G	NR	6E-40		0.1351	[0.12-0.16] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
632	chr9	6209696	6209697	rs992969	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	9p24.1		rs992969-G	NR	2E-213		0.0624	[0.058-0.066] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
632	chr9	6209696	6209697	rs992969	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Asthma	38,369 European ancestry cases, 411,131 European ancestry controls, 13,015 East Asian ancestry cases, 162,933 East Asian ancestry controls	NA	9p24.1		rs992969-G	NR	2E-28		0.1001	[0.082-0.118] unit decrease	Affymetrix, Illumina [25837673] (imputed)	N
632	chr9	6209696	6209697	rs992969	34103634	Valette K	2021-06-08	Commun Biol	Prioritization of candidate causal genes for asthma in susceptibility loci derived from UK Biobank.	Asthma	56,167 White-British ancestry cases, 352,255 White-British ancestry controls	NA	9p24.1	RANBP6, IL33	rs992969-G	0.747640281903744	1E-56		0.11990876	[0.11-0.13] unit decrease	Affymetrix [35186738] (imputed)	N
632	chr9	6209696	6209697	rs992969	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	9p24.1	IL33	rs992969-A	0.25	8E-107				NR [> 9500000] (imputed)	N
632	chr9	6209696	6209697	rs992969	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	9p24.1	IL33	rs992969-A	0.25298	2E-78		1.1382953	[1.12298746975675-1.15381185720836]	NR [9572556] (imputed)	N
632	chr9	6209696	6209697	rs992969	31959851	Olafsdottir TA	2020-01-20	Nat Commun	Eighty-eight variants highlight the role of T cell regulation and airway remodeling in asthma pathogenesis.	Asthma	16,247 European ancestry cases, 346,486 European ancestry controls, 52,942 cases, 355,713 controls	NA	9p24.1	IL33, TPD52L3, RANBP6, KIAA2026, MIR4665, UHRF2	rs992969-A	0.25235	5E-67		1.1319132	[1.11-1.15]	Affymetrix [32463443] (imputed)	N
632	chr9	6209696	6209697	rs992969	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	9p24.1	NR	rs992969-?	NR	2E-37				Affymetrix [~ 8270000] (imputed)	N
632	chr9	6209696	6209697	rs992969	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	9p24.1	NR	rs992969-?	NR	8E-30				Affymetrix [~ 8270000] (imputed)	N
632	chr9	6209696	6209697	rs992969	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	9p24.1	GLDC, IL33, KIAA2026, MIR4665, MLANA, RANBP6, TPD52L3, UHRF2	rs992969-A	0.25206	3E-64		1.127365	[1.11-1.14]	Affymetrix [8274727] (imputed)	N
632	chr9	6209696	6209697	rs992969	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (childhood onset)	9,433 British ancestry cases, 318,237 British ancestry controls	NA	9p24.1	RANBP6, IL33	rs992969-A	0.252	7E-42		1.248	[1.209-1.289]	Affymetrix [10894596] (imputed)	N
632	chr9	6209696	6209697	rs992969	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (adult onset)	21,564 British ancestry cases, 318,237 British ancestry controls	NA	9p24.1	RANBP6, IL33	rs992969-A	0.252	3E-17		1.1	[1.076-1.125]	Affymetrix [10894596] (imputed)	N
632	chr9	6209696	6209697	rs992969	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (glucocorticoids)	17,352 European ancestry cases, 188,348 European ancestry controls	NA	9p24.1	IL33	rs992969-A	0.251777	2E-27		0.13987124	[0.11-0.17] unit increase	Affymetrix [7288503] (imputed)	N
632	chr9	6209696	6209697	rs992969	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (adrenergics, inhalants)	28,880 European ancestry cases, 147,565 European ancestry controls	NA	9p24.1	IL33	rs992969-A	0.253772	4E-39		0.1357923	[0.12-0.16] unit increase	Affymetrix [7288503] (imputed)	N
632	chr9	6209696	6209697	rs992969	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma onset (childhood vs adult)	13,962 European ancestry childhood onset cases, 14,873 European ancestry adult onset cases	31,002 European ancestry childhood onset cases, 16,297 European ancestry adult onset cases	9p24.1	RANBP6, IL33	rs992969-A	0.248	1E-20		1.112	[1.09-1.13]	Affymetrix [9000000] (imputed)	N
632	chr9	6209696	6209697	rs992969	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (adult onset)	26,582 European ancestry cases, 300,671 European ancestry controls	16,297 European ancestry cases, 217,711 European ancestry controls	9p24.1	RANBP6, IL33	rs992969-?	NR	2E-29		1.095	[1.08-1.11]	Affymetrix [9000000] (imputed)	N
632	chr9	6209696	6209697	rs992969	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	9p24.1	RANBP6, IL33	rs992969-A	NR	3E-72		1.151	[1.14-1.17]	Affymetrix [9000000] (imputed)	N
632	chr9	6209696	6209697	rs992969	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls, 2,149 African ancestry cases, 6,055 African ancestry controls, 1,239 Japanese ancestry cases, 3,976 Japanese ancestry controls, 606 Latino cases, 792 Latino controls	NA	9p24.1	RANBP6, IL33	rs992969-A	0.25	7E-20		1.1627907	[1.14-1.2]	Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
632	chr9	6209696	6209697	rs992969	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls	NA	9p24.1	RANBP6, IL33	rs992969-A	0.25	4E-29		1.1764705	[1.14-1.22]	Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
632	chr9	6210098	6210099	rs3939286	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	9p24.1	NR	rs3939286-?	NR	7E-44				Affymetrix [~ 8270000] (imputed)	N
632	chr9	6210098	6210099	rs3939286	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Respiratory diseases	approximately 459,000 European ancestry individuals	NA	9p24.1		rs3939286-?	NR	1E-63				NR [~ 8900000] (imputed)	N
632	chr9	6213147	6213148	rs928412	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	9p24.1	NR	rs928412-?	NR	3E-59				Affymetrix [~ 8270000] (imputed)	N
632	chr9	6213147	6213148	rs928412	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	9p24.1	IL33	rs928412-A	0.2568	5E-62				Affymetrix [15688218] (imputed)	N
632	chr9	6213386	6213387	rs928413	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (age of onset)	117,130 European ancestry individuals	NA	9p24.1	NR	rs928413-G	0.271	3E-9		0.028	[0.019-0.037] unit decrease	NR [7647814] (imputed)	N
632	chr9	6213386	6213387	rs928413	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (childhood onset)	9,433 British ancestry cases, 318,237 British ancestry controls	NA	9p24.1	NR	rs928413-G	0.25	2E-40		1.19		Affymetrix [10894596] (imputed)	N
632	chr9	6213386	6213387	rs928413	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (age of onset)	37,846 British ancestry individuals	NA	9p24.1	NR	rs928413-G	0.25	5E-11				Affymetrix [10894596] (imputed)	N
632	chr9	6213386	6213387	rs928413	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (adult onset)	21,564 British ancestry cases, 318,237 British ancestry controls	NA	9p24.1	NR	rs928413-G	0.25	5E-17		1.19		Affymetrix [10894596] (imputed)	N
632	chr9	6213386	6213387	rs928413	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	9p24.1		rs928413-?	NR	8E-9				NR [~ 8900000] (imputed)	N
632	chr9	6213386	6213387	rs928413	27130862	Sarnowski C	2016-04-06	J Allergy Clin Immunol	Identification of a new locus at 16q12 associated with time to asthma onset.	Asthma (time to onset)	5,462 European ancestry cases, 8,424 European ancestry controls	NA	9p24.1	IL33	rs928413-G	0.25	7E-16		1.19	[1.13-1.25]	Illumina [2387926] (imputed)	N
632	chr9	6213386	6213387	rs928413	24241537	Bonnelykke K	2013-11-17	Nat Genet	A genome-wide association study identifies CDHR3 as a susceptibility locus for early childhood asthma with severe exacerbations.	Asthma (childhood onset)	1,173 European ancestry cases, 2,511 European ancestry controls	395 European ancestry cases, 2,663 European ancestry controls, 63 Turkish, Surinamese, Dutch Antillean, Moroccan, Cape Verdian and other ancestry cases, 917 Turkish, Surinamese, Dutch Antillean, Moroccan, Cape Verdian and other ancestry controls, 6,783 cases, 7,720 controls	9p24.1	IL33	rs928413-G	0.28	9E-13		1.24	[1.17-1.32]	Affymetrix, Illumina [124514]	N
632	chr9	6213467	6213468	rs7848215	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (multivariate analysis)	477,968 European ancestry individuals	NA	9p24.1	RANBP6, IL33	rs7848215-T	0.273	8E-10		0.029	[0.019-0.039] unit decrease	NR [NR] (imputed)	N
632	chr9	6213467	6213468	rs7848215	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (age of onset)	117,130 European ancestry individuals	NA	9p24.1	RANBP6, IL33	rs7848215-T	0.273	8E-10		0.029	[0.019-0.039] unit decrease	NR [7647814] (imputed)	N
632	chr9	6213467	6213468	rs7848215	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic rhinitis	18,915 European ancestry cases, 239,773 European ancestry controls	NA	9p24.1	IL33	rs7848215-T	0.255	5E-18		1.116	[1.09-1.143]	Affymetrix [15688218] (imputed)	N
632	chr9	6213467	6213468	rs7848215	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (age of onset)	37,846 British ancestry individuals	NA	9p24.1	NR	rs7848215-T	0.261	8E-12		1.031	[0.74-1.33] unit decrease	Affymetrix [10894596] (imputed)	N
632	chr9	6213467	6213468	rs7848215	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma onset (childhood vs adult)	13,962 European ancestry childhood onset cases, 14,873 European ancestry adult onset cases	31,002 European ancestry childhood onset cases, 16,297 European ancestry adult onset cases	9p24.1	RANBP6, IL33	rs7848215-T	0.254	9E-22		1.11	[1.09-1.13]	Affymetrix [9000000] (imputed)	N
632	chr9	6213467	6213468	rs7848215	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	9p24.1	RANBP6, IL33	rs7848215-?	NR	5E-115		1.206	[1.19-1.22]	Affymetrix [9000000] (imputed)	N
632	chr9	6213467	6213468	rs7848215	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	9p24.1	RANBP6, IL33	rs7848215-T	NR	9E-71		1.148	[1.13-1.16]	Affymetrix [9000000] (imputed)	N
632	chr9	6213819	6213820	rs142807069	33893285	Guindo-Martinez M	2021-04-23	Nat Commun	The impact of non-additive genetic associations on age-related complex diseases.	Asthma	9,209 European ancestry cases, 47,428 European ancestry controls	NA	9p24.1		rs142807069-G	0.1888606	1E-8		1.13		Affymetrix [15607971] (imputed)	N
632	chr9	6213828	6213829	rs10975488	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Allergy	66,973 European ancestry cases, 113,768 European ancestry controls	NA	9p24.1	RANBP6, IL33	rs10975488-?	NR	8E-11		1.087	[1.060-1.115]	Illumina [12845910] (imputed)	N
632	chr9	6218959	6218960	rs2066361	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	9p24.1	IL33	rs2066361-A	0.25783	2E-10		0.016192157	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
632	chr9	6219175	6219176	rs2066362	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	9p24.1	IL33	rs2066362-?	NR	3E-18	(Gly)	0.09866064	NR unit increase	Illumina [609262]	N
632	chr9	6219175	6219176	rs2066362	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	9p24.1	IL33	rs2066362-?	NR	4E-13	(Gly)	0.0947493	NR unit increase	Illumina [609262]	N
632	chr9	6221245	6221246	rs16924144	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	9p24.1	NR	rs16924144-?	NR	6E-10				Affymetrix [~ 8270000] (imputed)	N
632	chr9	6222148	6222149	rs10815376	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	9p24.1	NR	rs10815376-?	NR	6E-26				Affymetrix [~ 8270000] (imputed)	N
632	chr9	6226288	6226289	rs10815381	27576016	Zhao B	2016-08-30	Am J Respir Crit Care Med	A Genome-Wide Association Study to Identify Single-Nucleotide Polymorphisms for Acute Kidney Injury.	Acute kidney injury in critical illness	709 European ancestry cases, 619  European ancestry controls	206  European ancestry cases, 1,406  European ancestry controls	9p24.1	NR	rs10815381-?	NR	8E-6		1.43	[1.22-1.67]	Illumina [9076120] (imputed)	N
632	chr9	6227417	6227418	rs10118776	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Small cell lung carcinoma	2,664 European ancestry cases,  21,444 European ancestry controls	NA	9p24.1	IL33	rs10118776-G	0.062814101	4E-7		1.3389986	[1.196193182-1.498852438]	Illumina [10439017] (imputed)	N
632	chr9	6231238	6231239	rs12551256	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma (childhood onset)	7,131 European ancestry cases, 13,631 European ancestry controls, 1,239 Japanese ancestry cases, 3,976 Japanese ancestry controls, 606 Latino cases, 792 Latino controls	NA	9p24.1	IL33, RANBP6, TPD52L3	rs12551256-A	NR	3E-8		1.1235955	[1.08-1.16]	Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
632	chr9	6233081	6233082	rs12339348	29785011	Zhu Z	2018-05-21	Nat Genet	A genome-wide cross-trait analysis from UK Biobank highlights the shared genetic architecture of asthma and allergic diseases.	Allergic disease (asthma, hay fever or eczema)	25,685 European ancestry allergic diseases cases, 76,768 European ancestry controls	NA	9p24.1	GLDC, IL33, TPD52 L3, UHRF2	rs12339348-?	NR	2E-8		1.07	[1.05-1.1]	Affymetrix [74888535] (imputed)	N
632	chr9	6233220	6233221	rs10975501	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	9p24.1		rs10975501-C	NR	5E-10		0.0261	[0.018-0.034] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
632	chr9	6236406	6236407	rs55645596	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	9p24.1	NR	rs55645596-?	NR	6E-14				Affymetrix [~ 8270000] (imputed)	N
632	chr9	6252689	6252690	rs149045797	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	9p24.1	IL33	rs149045797-G	0.00463400000000003	2E-58		0.26387036	[0.23-0.3] unit decrease	Affymetrix [93095623] (imputed)	N
632	chr9	6252689	6252690	rs149045797	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	9p24.1	IL33	rs149045797-G	0.00463499999999995	1E-56		0.2592606	[0.23-0.29] unit decrease	Affymetrix [93095623] (imputed)	N
632	chr9	6252689	6252690	rs149045797	31959851	Olafsdottir TA	2020-01-20	Nat Commun	Eighty-eight variants highlight the role of T cell regulation and airway remodeling in asthma pathogenesis.	Asthma	16,247 European ancestry cases, 346,486 European ancestry controls, 52,942 cases, 355,713 controls	NA	9p24.1	IL33, TPD52L3, UHRF2, RANBP6, KIAA2026, MIR4665	rs149045797-T	0.99522	4E-18		1.5411408	[1.39-1.69]	Affymetrix [32463443] (imputed)	N
632	chr9	6252689	6252690	rs149045797	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	9p24.1	NR	rs149045797-?	NR	1E-12				Affymetrix [~ 8270000] (imputed)	N
632	chr9	6253570	6253571	rs10975519	23472165	Albertsen HM	2013-03-05	PLoS One	Genome-wide association study link novel loci to endometriosis.	Endometriosis	1,514 European ancestry cases, 12,660 European ancestry controls	505 European ancestry cases, 1,811 European ancestry controls	9p24.1	IL33	rs10975519-A	0.3	9E-7		1.19	[NR]	Illumina [580699]	N
632	chr9	6255966	6255967	rs146597587	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	9p24.1	NR	rs146597587-?	NR	4E-11				Affymetrix [~ 8270000] (imputed)	N
632	chr9	6255966	6255967	rs146597587	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	9p24.1	NR	rs146597587-?	NR	1E-10				Affymetrix [~ 8270000] (imputed)	N
632	chr9	6255966	6255967	rs146597587	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	9p24.1	NR	rs146597587-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
632	chr9	6255966	6255967	rs146597587	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	9p24.1	GLDC, IL33, TPD52L3, UHRF2	rs146597587-G	0.995153	7E-17		1.4511191	[1.36-1.54]	Affymetrix [8274727] (imputed)	N
632	chr9	6261694	6261695	rs4008353	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	9p24.1		rs4008353-T	NR	3E-9		0.0246	[0.017-0.033] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
632	chr9	6261694	6261695	rs4008353	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	9p24.1		rs4008353-T	NR	2E-9		0.0255	[0.017-0.034] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
632	chr9	6262457	6262458	rs7025665	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	9p24.1	TPD52L3	rs7025665-C		3E-9		0.028	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
632	chr9	6263443	6263444	rs370820588	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	9p24.1	intergenic	rs370820588-C	0.0048	3E-26		0.280968	[0.23-0.33] unit decrease	Affymetrix [~ 2500000] (imputed)	N
632	chr9	6264550	6264551	rs143215670	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	9p24.1	intergenic	rs143215670-C	0.0048	1E-22		0.2600724	[0.21-0.31] unit decrease	Affymetrix [~ 2500000] (imputed)	N
632	chr9	6265255	6265256	rs10815397	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	9p24.1		rs10815397-G	0.249206	3E-11		0.017099397	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
632	chr9	6278070	6278071	rs2169284	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	9p24.1	TPD52L3	rs2169284-?	NR	5E-6	(glycodeoxycholate)	0.3759639	[0.22-0.54] unit increase	Affymetrix [at least 2500000] (imputed)	N
632	chr9	6288603	6288604	rs145697747	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	9p24.1	intergenic	rs145697747-C	0.0048	8E-23		0.262067	[0.21-0.31] unit increase	Affymetrix [~ 2500000] (imputed)	N
632	chr9	6288603	6288604	rs145697747	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	9p24.1	intergenic	rs145697747-C	0.0048	9E-28		0.2893173	[0.24-0.34] unit decrease	Affymetrix [~ 2500000] (imputed)	N
632	chr9	6288603	6288604	rs145697747	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	9p24.1	intergenic	rs145697747-C	0.0048	3E-27		0.2878992	[0.24-0.34] unit decrease	Affymetrix [~ 2500000] (imputed)	N
633	chr9	6292797	6292798	rs186174039	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Wheeze or whistling in the chest in last year (UKB data field 2316)	93,869 European ancestry cases, 353,731 European ancestry controls	NA	9p24.1		rs186174039-C	0.004876	7E-10		0.24	[0.16-0.32] unit decrease	NR [11842647] (imputed)	N
633	chr9	6295586	6295587	rs185598871	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	9p24.1		rs185598871-?	NR	7E-15				NR [~ 8900000] (imputed)	N
633	chr9	6305903	6305904	rs2169287	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	9p24.1	NR	rs2169287-?	NR	2E-31				Affymetrix [~ 8270000] (imputed)	N
633	chr9	6308728	6308729	rs10975539	33328473	Ahluwalia TS	2020-12-16	Nat Commun	FUT2-ABO epistasis increases the risk of early childhood asthma and Streptococcus pneumoniae respiratory illnesses.	Childhood asthma with severe exacerbations	2,866 European ancestry cases,  65,415 European ancestry controls	NA	9p24.1	NR	rs10975539-T	NR	3E-10		0.206	[0.14-0.27] unit increase	Illumina [up to 525976] (imputed)	N
633	chr9	6309187	6309188	rs3847261	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	9p24.1	NR	rs3847261-A	0.946097	2E-22		0.039897	[0.032-0.048] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
633	chr9	6327689	6327690	rs7041863	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	9p24.1		rs7041863-C	NR	3E-9		0.0253	[0.017-0.034] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
633	chr9	6329887	6329888	rs898673	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	9p24.1	TPD52L3	rs898673-G	0.9477291	5E-16		0.04015111	[0.03-0.05] unit increase	Affymetrix [93095623] (imputed)	N
633	chr9	6329887	6329888	rs898673	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	9p24.1		rs898673-?	NR	2E-16				NR [~ 8900000] (imputed)	N
633	chr9	6332900	6332901	rs721352	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Chronic sinus infection	5,291 European ancestry cases, 79,622 European ancestry controls	NA	9p24.1	NR	rs721352-?	NR	5E-6		0.0986	[0.056-0.141] unit decrease	Illumina [at least 560000] (imputed)	N
633	chr9	6336032	6336033	rs76311067	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	9p24.1	TPD52L3	rs76311067-A	0.024115	6E-11		0.050218392	[0.035-0.065] unit increase	Affymetrix [93095623] (imputed)	N
633	chr9	6350234	6350235	rs2169282	29785011	Zhu Z	2018-05-21	Nat Genet	A genome-wide cross-trait analysis from UK Biobank highlights the shared genetic architecture of asthma and allergic diseases.	Asthma or allergic disease (pleiotropy)	14,085 European asthma cases, 25,685 European ancestry allergic diseases cases, 76,768 European ancestry controls	NA	9p24.1	GLDC, UHRF2	rs2169282-?	NR	2E-10		1.09		NR [74888535] (imputed)	N
633	chr9	6356656	6356657	rs7021445	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9p24.1	NR	rs7021445-T	0.944987	2E-21				Affymetrix, Illumina [24332387] (imputed)	N
633	chr9	6356656	6356657	rs7021445	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	9p24.1	NR	rs7021445-T	0.948542	3E-20		0.038439	[0.03-0.047] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
633	chr9	6356656	6356657	rs7021445	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9p24.1	NR	rs7021445-T	0.945007	3E-19				Affymetrix, Illumina [24558453] (imputed)	N
633	chr9	6356656	6356657	rs7021445	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	9p24.1	NR	rs7021445-T	0.948539	5E-19		0.037271	[0.029-0.045] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
633	chr9	6362364	6362365	rs7851246	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	9p24.1	NR	rs7851246-?	NR	2E-23				Affymetrix [~ 8270000] (imputed)	N
633	chr9	6362364	6362365	rs7851246	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	9p24.1	NR	rs7851246-?	NR	2E-19				Affymetrix [~ 8270000] (imputed)	N
633	chr9	6370087	6370088	rs4008347	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	9p24.1		rs4008347-G	0.9478262	9E-17		0.041296832	[0.032-0.051] unit increase	Affymetrix [93095623] (imputed)	N
633	chr9	6370087	6370088	rs4008347	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	9p24.1		rs4008347-G	0.9478318	2E-16		0.040831067	[0.031-0.051] unit increase	Affymetrix [93095623] (imputed)	N
633	chr9	6370087	6370088	rs4008347	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9p24.1	NR	rs4008347-G	0.94793	8E-20				Affymetrix, Illumina [24653286] (imputed)	N
633	chr9	6380604	6380605	rs139939994	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	9p24.1	GLDC, IL33, TPD52L3, UHRF2	rs139939994-G	0.008587	1E-8		1.2131327	[1.15-1.28]	Affymetrix [8274727] (imputed)	N
633	chr9	6400029	6400030	rs10815428	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	9p24.1		rs10815428-T	0.411	5E-22				Affymetrix [10369434] (imputed)	N
633	chr9	6406135	6406136	rs7019218	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation Hannum age acceleration	6,148 African American individuals	NA	9p24.1	NR	rs7019218-T	0.8724	2E-15		0.9633	[0.73-1.2] unit decrease	Affymetrix, Illumina [12989706] (imputed)	N
633	chr9	6406427	6406428	rs10758782	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	9p24.1	NR	rs10758782-T	NR	6E-11		0.0334	[0.023-0.043] unit increase	Affymetrix [9000000] (imputed)	N
633	chr9	6406427	6406428	rs10758782	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	9p24.1	NR	rs10758782-T	NR	1E-11		0.0346	[0.025-0.045] unit decrease	Affymetrix [9000000] (imputed)	N
634	chr9	6446118	6446119	rs111520934	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation Hannum age acceleration	6,148 African American individuals	NA	9p24.1	NR	rs111520934-A	0.9317	5E-10		1.1984	[0.82-1.58] unit decrease	Affymetrix, Illumina [12989706] (imputed)	N
634	chr9	6448911	6448912	rs4742205	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation Hannum age acceleration	34,449 European ancestry individuals, 6,148 African American individuals	NA	9p24.1	NR	rs4742205-?	NR	2E-9				Affymetrix, Illumina [6210504] (imputed)	N
634	chr9	6449700	6449701	rs79793188	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	9p24.1	NR	rs79793188-C	0.812184	1E-8		0.00624212	[0.0041-0.0083] unit increase	Affymetrix [16582909] (imputed)	N
634	chr9	6449700	6449701	rs79793188	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	9p24.1	NR	rs79793188-C	0.812184	1E-7		0.00632183	[0.004-0.0087] unit increase	Affymetrix [16582965] (imputed)	N
634	chr9	6486307	6486308	rs16924631	22699663	Divaris K	2012-07-01	J Dent Res	Genome-wide association study of periodontal pathogen colonization.	Periodontal microbiota	1,020 European ancestry individuals	NA	9p24.1	UHRF2, GLDC, TPD52L3, IL33	rs16924631-C	0.122	3E-6	(Red)	2.29	[1.61-3.24]	Affymetrix [~ 2500000] (imputed)	N
634	chr9	6490490	6490491	rs113626350	30837465	Wittemans LBL	2019-03-05	Nat Commun	Assessing the causal association of glycine with risk of cardio-metabolic diseases.	Glycine levels	80,003 European ancestry individuals	NA	9p24.1	NR	rs113626350-A	0.0458	5E-12	(conditional)			Affymetrix, Illumina [NR] (imputed)	N
634	chr9	6502428	6502429	rs73394299	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation Hannum age acceleration	6,148 African American individuals	NA	9p24.1	NR	rs73394299-T	0.9282	4E-10		1.1955	[0.82-1.57] unit decrease	Affymetrix, Illumina [12989706] (imputed)	N
634	chr9	6504188	6504189	rs7864027	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	9p24.1	GLDC, IL33, TPD52L3, UHRF2	rs7864027-A	0.150095	4E-18		1.0790429	[1.06-1.1]	Affymetrix [8274727] (imputed)	N
634	chr9	6532543	6532544	rs1061407	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	9p24.1		rs1061407-?	NR	1E-23				NR [~ 8900000] (imputed)	N
634	chr9	6534079	6534080	rs55933544	29210060	Koster R	2017-12-06	Int J Cancer	Genome-wide association study identifies the GLDC/IL33 locus associated with survival of osteosarcoma patients.	Overall survival in osteosarcoma	523 European ancestry individuals	109 Brazilian ancestry individuals	9p24.1	GLDC	rs55933544-T	0.231	5E-8		1.89	[1.50-2.37]	Illumina [510856]	N
634	chr9	6538278	6538279	rs2026972	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycine levels	114,978 European ancestry individuals	NA	9p24.1		rs2026972-G	0.691672	1E-83		0.0818916	[0.074-0.09] unit increase	NR [11722792] (imputed)	N
634	chr9	6539255	6539256	rs2013966	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	9p24.1		rs2013966-C	NR	2E-9		0.0098	[0.0067-0.0129] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
634	chr9	6539255	6539256	rs2013966	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	9p24.1	GLDC	rs2013966-?	NR	8E-8		0.015921101	[0.01-0.022] unit decrease	Illumina [27896057] (imputed)	N
634	chr9	6545604	6545605	rs75636497	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	9p24.1	GLDC, IL33, TPD52L3, UHRF2	rs75636497-C	0.883391	2E-8		1.0568596	[1.04-1.08]	Affymetrix [8274727] (imputed)	N
634	chr9	6550023	6550024	rs17591030	30837465	Wittemans LBL	2019-03-05	Nat Commun	Assessing the causal association of glycine with risk of cardio-metabolic diseases.	Glycine levels	80,003 European ancestry individuals	NA	9p24.1	GLDC	rs17591030-C	0.715	2E-40		0.08	[0.068-0.092] unit increase	Affymetrix, Illumina [NR] (imputed)	N
635	chr9	6554780	6554781	rs143119940	30837465	Wittemans LBL	2019-03-05	Nat Commun	Assessing the causal association of glycine with risk of cardio-metabolic diseases.	Glycine levels	80,003 European ancestry individuals	NA	9p24.1	NR	rs143119940-A	0.0109	1E-19	(conditional)			Affymetrix, Illumina [NR] (imputed)	N
635	chr9	6555078	6555079	rs1929933	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	9p24.1	NR	rs1929933-?	NR	9E-11				Affymetrix [~ 8270000] (imputed)	N
635	chr9	6556947	6556948	rs4333664	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	9p24.1		rs4333664-C	0.57	1E-12				Affymetrix [10369434] (imputed)	N
635	chr9	6583517	6583518	rs10975660	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	9p24.1	NR	rs10975660-?	NR	7E-9				Affymetrix [~ 8270000] (imputed)	N
635	chr9	6603256	6603257	rs77438938	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		GLDC	rs77438938-?	NR	4E-13	(female)	0.683367	[NR] unit increase	Affymetrix [NR] (imputed)	N
635	chr9	6614059	6614060	rs117035473	34387878	Kim KY	2021-08-13	Hepatology	Genome-wide association of individual vulnerability with alcoholic liver disease: A Korean Genome and Epidemiology Study.	Alcohol-associated liver disease in heavy drinkers	1,185 Korean ancestry cases, 2,246 Korean ancestry controls	NA	9p24.1		rs117035473-?	NR	9E-6		0.534	[0.405-0.704]	Affymetrix [7975321] (imputed)	N
635	chr9	6621683	6621684	rs10758800	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interferon gamma-induced protein 10 levels	3,685 Finnish ancestry individuals	NA	9p24.1	NR	rs10758800-G		8E-6		0.1221	[0.069-0.176] SD units decrease	NR [10700000] (imputed)	N
635	chr9	6627016	6627017	rs34298851	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	9p24.1		rs34298851-?	NR	1E-12				NR [~ 8900000] (imputed)	N
635	chr9	6643980	6643981	rs150484890	25839716	Ng E	2015-04-02	Environ Res	Genome-wide association study of plasma levels of polychlorinated biphenyls disclose an association with the CYP2B6 gene in a population-based sample.	Polychlorinated biphenyl levels	922 European ancestry individuals	NA	9p24.1	NR	rs150484890-?		5E-7	(PCB170)	1.27	[0.78-1.76] unit decrease	Illumina [8736858] (imputed)	N
635	chr9	6655055	6655056	rs7031325	26606652	Alarcon-Riquelme ME	2015-11-25	Arthritis Rheumatol	Genome-Wide Association Study in an Amerindian Ancestry Population Reveals Novel Systemic Lupus Erythematosus Risk Loci and the Role of European Admixture.	Systemic lupus erythematosus	862 Native American ancestry-enriched North American cases, 531 Native American ancestry-enriched South American cases, 1,973 Native American ancestry-enriched North American controls, 344 Native American ancestry-enriched South American controls	NA	9p24.1	Intergenic	rs7031325-C	0.512	7E-6		1.45	[1.24-1.70]	Illumina [580483] (imputed)	N
635	chr9	6657689	6657690	rs67506027	30837465	Wittemans LBL	2019-03-05	Nat Commun	Assessing the causal association of glycine with risk of cardio-metabolic diseases.	Glycine levels	80,003 European ancestry individuals	NA	9p24.1	NR	rs67506027-A	0.6074	2E-11	(conditional)			Affymetrix, Illumina [NR] (imputed)	N
635	chr9	6664707	6664708	rs1755618	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9p24.1		rs1755618-?	NR	2E-8				NR [~ 8900000] (imputed)	N
635	chr9	6665009	6665010	rs1658972	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	9p24.1		rs1658972-T	NR	2E-12		0.0196	[0.014-0.025] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
635	chr9	6665009	6665010	rs1658972	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	9p24.1	GLDC, KDM4C	rs1658972-C	0.86	2E-11		6.69	z-score increase	Affymetrix [4312306] (imputed)	N
635	chr9	6665009	6665010	rs1658972	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Alanine aminotransferase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	9p24.1	GLDC, KDM4C	rs1658972-?		1E-8		0.0301	[0.02-0.04] unit increase	Illumina [31500000] (imputed)	N
635	chr9	6665009	6665010	rs1658972	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Alanine transaminase levels	134,182 Japanese ancestry individuals	NA	9p24.1	GLDC, KDM4C	rs1658972-?	NR	2E-8		0.03386	[0.022-0.046] unit decrease	Illumina [6108953] (imputed)	N
635	chr9	6667927	6667928	rs820503	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	9p24.1	NR	rs820503-C	0.86252	3E-11		0.0107083	[0.0074-0.014] unit increase	Affymetrix [16582621] (imputed)	N
635	chr9	6667927	6667928	rs820503	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	9p24.1	NR	rs820503-C	0.86252	4E-11		0.0112088	[0.0077-0.0147] unit increase	Affymetrix [16582614] (imputed)	N
635	chr9	6667927	6667928	rs820503	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite modules (eigenmetabolites) in chronic kidney disease	1,221 cases	406 cases	9p24.1	GLDC3	rs820503-A	0.14	6E-24	(3-hydroxy-3-methylglutarate, 3-methylglutaconate, 3-methylglutarate, 2-methylglutarate, 3-methylglutarylcarnitine)	0.012	[0.01-0.014] unit decrease	Illumina [7750367] (imputed)	N
635	chr9	6667927	6667928	rs820503	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	9p24.1	GLDC	rs820503-A	0.14	3E-22	(3-methylglutaconate)	0.292	[0.23-0.35] unit decrease	Illumina [7750367] (imputed)	N
635	chr9	6667927	6667928	rs820503	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	9p24.1	GLDC	rs820503-A	0.14	2E-19	(3-methylglutarate/2-methylglutarate)	0.398	[0.31-0.48] unit decrease	Illumina [7750367] (imputed)	N
635	chr9	6667927	6667928	rs820503	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	9p24.1	GLDC	rs820503-A	0.14	2E-18	(3-methylglutarylcarnitine (2))	0.407	[0.31-0.5] unit decrease	Illumina [7750367] (imputed)	N
635	chr9	6668277	6668278	rs820504	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	9p24.1	NR	rs820504-G	0.864375	2E-24		0.0121426	[0.0097-0.0145] unit increase	Affymetrix [16582909] (imputed)	N
635	chr9	6668277	6668278	rs820504	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	9p24.1	NR	rs820504-G	0.863965	2E-16		0.0137463	[0.01-0.017] unit increase	Affymetrix [16585854] (imputed)	N
635	chr9	6668277	6668278	rs820504	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	9p24.1	NR	rs820504-G	0.864375	4E-19		0.0118723	[0.0092-0.0145] unit increase	Affymetrix [16582965] (imputed)	N
635	chr9	6668277	6668278	rs820504	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	9p24.1	NR	rs820504-G	0.863965	4E-10		0.0126037	[0.0085-0.0167] unit increase	Affymetrix [16585866] (imputed)	N
635	chr9	6668910	6668911	rs11789414	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	9p24.1		rs11789414-A	NR	2E-8		0.0135	[0.0088-0.0182] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
635	chr9	6673010	6673011	rs35799743	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	9p24.1	GLDC, KDM4C	rs35799743-AT	0.810645	2E-34	(3-methylglutarylcarnitine (2))	0.291	[0.24-0.34] unit increase	Illumina [13039987] (imputed)	N
635	chr9	6677166	6677167	rs1759416	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	9p24.1	GLDC, KDM4C	rs1759416-A	0.815079	3E-50	(3-methylglutaconate)	0.395	[0.34-0.45] unit increase	Illumina [13039987] (imputed)	N
636	chr9	6695396	6695397	rs1094038	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	9p24.1	KDM4C	rs1094038-?	NR	1E-9	(Gly)	0.069918536	NR unit decrease	Illumina [609262]	N
636	chr9	6695396	6695397	rs1094038	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	9p24.1	KDM4C	rs1094038-?	NR	9E-7	(Gly)	0.06440089	NR unit decrease	Illumina [609262]	N
636	chr9	6703996	6703997	rs820496	35115690	Lopera-Maya EA	2022-02-03	Nat Genet	Effect of host genetics on the gut microbiome in 7,738 participants of the Dutch Microbiome Project.	Gut bacterial pathway abundance (ASPASN.PWY..superpathway.of.L.aspartate.and.L.asparagine.biosynthesis)	7,738 European ancestry individuals	NA	9p24.1		rs820496-C	0.45426694844388904	2E-8		0.09469266	[0.061-0.128] unit decrease	Illumina [5584686] (imputed)	N
636	chr9	6711362	6711363	rs7020058	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	9p24.1		rs7020058-?	NR	6E-10				NR [~ 8900000] (imputed)	N
636	chr9	6739752	6739753	rs77954165	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Stem cell growth factor beta levels	3,682 Finnish ancestry individuals	NA	9p24.1	NR	rs77954165-C		5E-6		0.2582	[0.15-0.37] SD units decrease	NR [10700000] (imputed)	N
636	chr9	6784725	6784726	rs10815468	20889312	Wang KS	2010-10-01	Schizophr Res	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	9p24.1	NR	rs10815468-?	NR	7E-6		1.2194	[NR]	Affymetrix [722112]	N
637	chr9	6849316	6849317	rs4742269	20923822	Niu N	2010-10-05	Genome Res	Radiation pharmacogenomics: a genome-wide association approach to identify radiation response biomarkers using human lymphoblastoid cell lines.	Radiation response	93 African American human lymphoblastoid cell lines, 89 European ancestry human lymphoblastoid cell lines, 95 Han Chinese ancestry human lymphoblastoid cell lines	NA	9p24.1	KDM4C	rs4742269-?	0.14	5E-6				Affymetrix, Illumina [1348798]	N
637	chr9	6866465	6866466	rs10975861	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	9p24.1	GLDC	rs10975861-?	NR	9E-6	(adipic acid)	0.21152282	[0.12-0.31] unit decrease	Affymetrix [at least 2500000] (imputed)	N
637	chr9	6867763	6867764	rs183851388	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	California verbal learning test score	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	9p24.1	KDM4C	rs183851388-A	NR	2E-7		11.44054	[7.21-15.67] unit decrease	Illumina [> 6200000] (imputed)	N
637	chr9	6868736	6868737	rs77366980	34847907	Tegelberg P	2021-11-30	BMC Oral Health	Genome-wide association study of periodontal pocketing in Finnish adults.	Periodontal pocket (adjusted for age and sex)	3,906 Finnish ancestry individuals	NA	9p24.1		rs77366980-T	0.14	4E-6				Illumina [NR] (imputed)	N
637	chr9	6880262	6880263	rs10975870	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	9p24.1	KDM4C	rs10975870-G	0.239	8E-7	(EA)	0.024	[0.014-0.033] kg/m2 increase	Affymetrix, Illumina [2550021]	N
637	chr9	6880262	6880263	rs10975870	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	9p24.1	KDM4C	rs10975870-G	0.234	3E-7		0.024	[0.015-0.033] kg/m2 increase	Affymetrix, Illumina [2550021]	N
637	chr9	6899217	6899218	rs144112322	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	9p24.1		rs144112322-G	NR	7E-10		0.0857	[0.058-0.113] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
637	chr9	6926232	6926233	rs10115920	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		9p24.1	KDM4C	rs10115920-G	0.348576	9E-9		0.00828956	[0.0055-0.0111] unit decrease	Affymetrix [12370749]	N
637	chr9	6942939	6942940	rs7037266	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	9p24.1	NA	rs7037266-A	0.3576	1E-9		0.0106	[0.0071-0.0141] unit decrease	NR [~ 27400000] (imputed)	N
637	chr9	6942939	6942940	rs7037266	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	9p24.1	KDM4C	rs7037266-A	0.37	5E-9		0.03	[0.02-0.04] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
638	chr9	6956849	6956850	rs12352785	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	9p24.1	NR	rs12352785-A	NR	6E-13		0.013	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
638	chr9	6959839	6959840	rs7042372	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	9p24.1		rs7042372-?	NR	3E-8				NR [~ 8900000] (imputed)	N
638	chr9	6970805	6970806	rs818898	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	9p24.1	KDM4C	rs818898-A	0.31586	2E-15		0.0120672	[0.0091-0.0151] unit increase	Affymetrix [12370749]	N
638	chr9	7007062	7007063	rs7025832	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	9p24.1	NR	rs7025832-?	NR	7E-8				Affymetrix [NR]	N
638	chr9	7007725	7007726	rs818877	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	9p24.1	GLDC	rs818877-?	NR	9E-6	(phosphoenolpyruvic acid)	0.20594914	[0.12-0.3] unit decrease	Affymetrix [at least 2500000] (imputed)	N
638	chr9	7007994	7007995	rs143831999	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	CTACK levels	3,631 Finnish ancestry individuals	NA	9p24.1	NR	rs143831999-C	NR	3E-6		0.521	[0.3-0.74] SD units decrease	NR [10700000] (imputed)	N
638	chr9	7042937	7042938	rs62534435	33287642	Said MA	2020-12-08	J Am Heart Assoc	Associations of Observational and Genetically Determined Caffeine Intake With Coronary Artery Disease and Diabetes Mellitus.	Caffeine consumption from tea	395,866 European ancestry individuals	NA	9p24.1	KDM4C	rs62534435-C	0.796528	4E-9		0.01629	[0.011-0.022] unit decrease	Affymetrix [19400838] (imputed)	N
638	chr9	7043454	7043455	rs16925187	23149075	Aslibekyan S	2012-11-10	Nutr Metab Cardiovasc Dis	Preliminary evidence of genetic determinants of adiponectin response to fenofibrate in the Genetics of Lipid Lowering Drugs and Diet Network.	Response to fenofibrate (adiponectin levels)	793 European ancestry individuals	NA	9p24.1	KDM4C	rs16925187-?	NR	5E-6	(Response)	0.1	[0.061-0.139] ng/dL increase	Affymetrix [2543887] (imputed)	N
638	chr9	7045057	7045058	rs16925200	29374629	Ortiz-Fernandez L	2018-01-27	Ann Rheum Dis	Cross-phenotype analysis of Immunochip data identifies <i>KDM4C</i> as a relevant <i>locus</i> for the development of systemic vasculitis.	Systemic vasculitis	2,425 European ancestry cases, 4,526 European ancestry controls	NA	9p24.1	KDM4C	rs16925200-C		6E-7		1.75	[1.41-2.18]	Illumina [191948]	N
638	chr9	7050090	7050091	rs1057199	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	9p24.1		rs1057199-A	NR	2E-8		0.0115	[0.0076-0.0154] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
638	chr9	7050340	7050341	rs1057200	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	9p24.1	KDM4C	rs1057200-A	0.614001	3E-14		0.017431658	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
638	chr9	7050938	7050939	rs7031625	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	9p24.1	KDM4C	rs7031625-C	0.689445	4E-12		0.016782986	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
638	chr9	7051244	7051245	rs10815509	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	9p24.1	Intergenic	rs10815509-C	0.6216	3E-9	(MTAG)	0.008	[0.0055-0.0105] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
638	chr9	7053665	7053666	rs114111025	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation-estimated plasminogen activator inhibitor-1 levels	6,149 African American individuals	NA	9p24.1	NR	rs114111025-A	0.9419	3E-9		604.162	[403.96-804.37] unit increase	Affymetrix, Illumina [12990252] (imputed)	N
638	chr9	7056821	7056822	rs1407855	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	9p24.1	Intergenic	rs1407855-A	0.3856	6E-9	(MTAG)	0.0107	[0.0072-0.0142] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
638	chr9	7056821	7056822	rs1407855	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	9p24.1	Intergenic	rs1407855-A	0.386	5E-11	(MTAG)	0.0111	[0.0078-0.0144] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
638	chr9	7057535	7057536	rs4742293	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	9p24.1	NR	rs4742293-T	0.675057	2E-11		0.0135	[0.0096-0.0174] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
638	chr9	7058107	7058108	rs10491779	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9p24.1	NR	rs10491779-G	0.652001	3E-10				Affymetrix, Illumina [24246363] (imputed)	N
638	chr9	7071058	7071059	rs960658	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	9p24.1	Intergenic	rs960658-A	0.363	8E-9	(MTAG)	0.0137	[0.009-0.0184] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
638	chr9	7071705	7071706	rs4641121	26606652	Alarcon-Riquelme ME	2015-11-25	Arthritis Rheumatol	Genome-Wide Association Study in an Amerindian Ancestry Population Reveals Novel Systemic Lupus Erythematosus Risk Loci and the Role of European Admixture.	Systemic lupus erythematosus	862 Native American ancestry-enriched North American cases, 531 Native American ancestry-enriched South American cases, 1,973 Native American ancestry-enriched North American controls, 344 Native American ancestry-enriched South American controls	NA	9p24.1	KDM4C	rs4641121-?	0.851	8E-6		1.4705882	[1.25-1.72]	Illumina [580483] (imputed)	N
639	chr9	7081673	7081674	rs16925298	25786224	Johnson EO	2015-03-18	PLoS One	Novel genetic locus implicated for HIV-1 acquisition with putative regulatory links to HIV replication and infectivity: a genome-wide association study.	HIV-1 susceptibility	628 African American high risk-cases, 1,376 African American high-risk controls, 327 European ancestry high-risk cases, 805 European ancestry high-risk controls	1,395 African American high-risk cases, 457 African American high-risk controls, 513 European ancestry high-risk cases, 168 European ancestry high-risk controls	9p24.1	KDM4C	rs16925298-G	0.06	2E-6		1.3	[0.97-1.72] (AA)	Illumina [~ 8000000] (imputed)	N
639	chr9	7166089	7166090	rs10511462	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9p24.1		rs10511462-?	NR	2E-8				NR [~ 8900000] (imputed)	N
639	chr9	7173499	7173500	rs7022054	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	9p24.1	KDM4C	rs7022054-G	NR	6E-8		1.0537407	[1.03-1.07]	Illumina [6627481] (imputed)	N
639	chr9	7173499	7173500	rs7022054	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	9p24.1	KDM4C	rs7022054-G	NR	3E-7	(EA)	1.0576415	[1.04-1.08]	Illumina [6627481] (imputed)	N
639	chr9	7173499	7173500	rs7022054	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	9p24.1	intergenic	rs7022054-G	NR	1E-7		1.0515248	[1.03-1.07]	Affymetrix, Illumina [up to 5107227] (imputed)	N
639	chr9	7174672	7174673	rs913588	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (age at voice breaking MTAG)	205,354 European ancestry individuals	NA	9p24.1		rs913588-G	NR	6E-9		0.01888068	[0.013-0.025] years increase	NR [7400000] (imputed)	N
639	chr9	7174672	7174673	rs913588	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	9p24.1		rs913588-?	NR	1E-19				NR [~ 8900000] (imputed)	N
639	chr9	7174672	7174673	rs913588	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	9p24.1	KDM4C	rs913588-G	0.49	6E-11		0.03	[0.02-0.04] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
639	chr9	7177283	7177284	rs2026714	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	9p24.1	NR	rs2026714-G	NR	4E-7		1.0526316	[NR]	Illumina [7158791] (imputed)	N
639	chr9	7195018	7195019	rs112332509	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	9p24.1	NR	rs112332509-C	0.5004	4E-6	(EA)	0.0335	[0.019-0.048] unit increase	Illumina [~ 11800000] (imputed)	N
639	chr9	7195407	7195408	rs2820914	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	9p24.1	JMJD2C	rs2820914-G	0.14	2E-6	(TG )	0.02	[NR] mg/dL increase	Illumina [899892]	N
640	chr9	7243988	7243989	rs143424528	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	9p24.1	KDM4C, C9orf123	rs143424528-A	0.0124271	1E-10	(4-hydroxyhippurate)	0.536	[0.37-0.7] unit increase	Illumina [13039987] (imputed)	N
640	chr9	7243988	7243989	rs143424528	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	1,509 European ancestry individuals	9p24.1	KDM4C, C9orf123	rs143424528-A	0.0124271	1E-10	(4-hydroxyhippurate)	0.536	[0.37-0.7] unit increase	Illumina [13039987] (imputed)	N
640	chr9	7267613	7267614	rs60244812	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	9p24.1	JMJD2C, LOC158345	rs60244812-A	0.029	7E-7		4.04	[2.23-7.3]	Illumina [1556551]	N
640	chr9	7274695	7274696	rs1887867	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	9p24.1	JMJD2C	rs1887867-G	0.405	6E-6	(Fat oxidation )	0.03	[NR] %NPEE increase	Illumina [899892]	N
640	chr9	7274695	7274696	rs1887867	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	9p24.1	JMJD2C	rs1887867-G	0.405	1E-6	(Total energy expenditure RQ)	0.04	[NR] unit increase	Illumina [899892]	N
640	chr9	7308131	7308132	rs191367443	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9p24.1	NR	rs191367443-A	0.01045	7E-13	(SEPT11)	0.04947	NR unit decrease	Illumina [1671387] (imputed)	N
640	chr9	7318035	7318036	rs73643019	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Posterior-cingulate cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	9p24.1	NR	rs73643019-?		9E-6				Illumina [4322238] (imputed)	N
641	chr9	7347378	7347379	rs112579352	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9p24.1	NR	rs112579352-T	0.02787	1E-9	(SEPT11)	0.02333	NR unit decrease	Illumina [1671387] (imputed)	N
641	chr9	7349258	7349259	rs56409854	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota relative abundance (bacterial taxa)	up to 858 Metropolitan French ancestry individuals	NA	9p24.1	NR	rs56409854-?	NR	2E-8	(Eubacterium_ruminantium)	0.672723	[0.44-0.9] unit decrease	Illumina [5293637] (imputed)	N
641	chr9	7361562	7361563	rs79224878	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9p24.1	NR	rs79224878-A	0.01742	2E-12	(RBMX)	0.1518	NR unit increase	Illumina [1671387] (imputed)	N
641	chr9	7373086	7373087	rs116847718	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9p24.1	NR	rs116847718-C	0.01742	4E-9	(SEPT11)	0.02706	NR unit decrease	Illumina [1671387] (imputed)	N
641	chr9	7388670	7388671	rs192964877	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	9p24.1	NR	rs192964877-?	NR	5E-6		0.575371	[0.33-0.82] unit increase	NR [13958389] (imputed)	N
641	chr9	7455713	7455714	rs118020490	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Artificially sweetened beverage consumption	85,852 European ancestry individuals	39,924 European ancestry individuals	9p24.1	KDM4C	rs118020490-G	0.9877	2E-6		0.0298	[0.017-0.042] unit increase	Affymetrix [~ 7740000] (imputed)	N
642	chr9	7506211	7506212	rs12237671	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Blautia)	1,068 Japanese ancestry individuals	NA	9p24.1	intergenic	rs12237671-T	0.19	2E-6	(female)	0.127	[0.076-0.178] unit decrease	Illumina [6380737] (imputed)	N
642	chr9	7509894	7509895	rs10119066	25763902	Draaken M	2015-03-12	PLoS Genet	Genome-wide association study and meta-analysis identify ISL1 as genome-wide significant susceptibility gene for bladder exstrophy.	Classic bladder exstrophy	208 European ancestry cases, 1,703 European ancestry controls	NA	9p24.1	NR	rs10119066-T	0.057	1E-6		2.51	[1.74-3.64]	Illumina [7261187] (imputed)	N
642	chr9	7518655	7518656	rs2381628	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	9p24.1	NR	rs2381628-C	0.816537394303516	6E-6	(IGP17)	0.1783	[0.1-0.26] unit increase	Illumina [~ 2500000] (imputed)	N
642	chr9	7545575	7545576	rs533040275	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	9p24.1	NR	rs533040275-?	NR	9E-6		4.437	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
642	chr9	7558260	7558261	rs4400445	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	9p24.1	LOC392285	rs4400445-A	0.124	9E-6	(Weight z-score )	0.02	[NR] SD increase	Illumina [899892]	N
642	chr9	7558260	7558261	rs4400445	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	9p24.1	LOC392285	rs4400445-A	0.124	8E-6	(Hip circumference )	0.03	[NR] cm increase	Illumina [899892]	N
642	chr9	7577892	7577893	rs10117057	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	9p24.1	NR	rs10117057-?	NR	8E-9				Affymetrix [NR]	N
642	chr9	7582631	7582632	rs7873807	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal cancer	978 Austrian ancestry colorectal cancer cases, 636 Austrian ancestry advanced colorectal adenoma cases, 4,294 European ancestry controls	NA	9p24.1	Intergenic	rs7873807-?		3E-6		1.246	[NR]	Affymetrix [492217] (imputed)	N
643	chr9	7604964	7604965	rs58680346	26926045	Adhikari K	2016-03-01	Nat Commun	A genome-wide association scan in admixed Latin Americans identifies loci influencing facial and scalp hair features.	Hair color	6,357 Latin American individuals	NA	9p24.1	TMEM261	rs58680346-?	NR	2E-6				Illumina [9143600] (imputed)	N
643	chr9	7649441	7649442	rs2930713	25201988	Rietveld CA	2014-09-08	Proc Natl Acad Sci U S A	Common genetic variants associated with cognitive performance identified using the proxy-phenotype method.	Educational attainment	106,736 European ancestry individuals	NA	9p24.1	intergenic	rs2930713-T	0.523	2E-6		0.021	[NR] unit increase	Affymetrix, Illumina [NR] (imputed)	N
643	chr9	7682600	7682601	rs842304	21160409	Petrovski S	2010-12-14	AIDS	Common human genetic variants and HIV-1 susceptibility: a genome-wide survey in a homogeneous African population.	HIV-1 susceptibility	531 Sub-Saharan African ancestry cases, 848 Sub-Saharan African ancestry controls	NA	9p24.1	AL591509.5	rs842304-?	0.42	4E-6				Illumina [~ 800000]	N
644	chr9	7734249	7734250	rs10758892	23049088	Meng W	2012-10-09	Invest Ophthalmol Vis Sci	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		9p24.1	intergenic	rs10758892-?	0.059	9E-6			[NR]	Affymetrix, Illumina [152234]	N
644	chr9	7760771	7760772	rs12551905	30306274	Shah RL	2018-10-10	Hum Genet	Genome-wide association studies for corneal and refractive astigmatism in UK Biobank demonstrate a shared role for myopia susceptibility loci.	Corneal astigmatism	Up to 86,335 European ancestry individuals		9p24.1	C9orf123	rs12551905-T	0.985	5E-6		0.054	[0.03-0.078] dioptres decrease	NR [5901671] (imputed)	N
644	chr9	7788632	7788633	rs2758211	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	9p24.1	PTPRD	rs2758211-?	NR	8E-6	(oxalate)	0.5848448	[0.33-0.84] unit increase	Affymetrix [at least 2500000] (imputed)	N
645	chr9	7874017	7874018	rs112156520	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Fourth ventricle volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	9p24.1	NR	rs112156520-?		5E-6				Illumina [4322238] (imputed)	N
645	chr9	7874457	7874458	rs12156604	34757267	Teng MS	2021-10-15	Atherosclerosis	Genome-wide association study revealed novel candidate gene loci associated with soluble E-selectin levels in a Taiwanese population.	Soluble E-selectin levels (adjusted for ABO rs2519093 genotypes)	4,525 East Asian ancestry individuals	NA	9p24.1		rs12156604-?	NR	1E-7				Affymetrix [7338548] (imputed)	N
645	chr9	7874457	7874458	rs12156604	34757267	Teng MS	2021-10-15	Atherosclerosis	Genome-wide association study revealed novel candidate gene loci associated with soluble E-selectin levels in a Taiwanese population.	Soluble E-selectin levels	4,525 East Asian ancestry individuals	NA	9p24.1		rs12156604-?	NR	1E-6		0.0353	[0.021-0.049] unit decrease	Affymetrix [7338548] (imputed)	N
645	chr9	7887950	7887951	rs10758913	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (Multivariate)	1,390 European ancestry individuals	NA	9p24.1		rs10758913-?	NR	7E-6	(MLM)			Illumina [~ 9000000] (imputed)	N
645	chr9	7900776	7900777	rs60588302	26859814	den Braber A	2016-02-09	Transl Psychiatry	Obsessive-compulsive symptoms in a large population-based twin-family sample are predicted by clinically based polygenic scores and by genome-wide SNPs.	Obsessive-compulsive symptoms	6,931 individuals	NA	9p24.1	C9orf123, TPRD	rs60588302-C	NR	6E-6		11.278	unit increase	Affymetrix, Illumina, Perlegen [31265038] (imputed)	N
645	chr9	7907392	7907393	rs76456563	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9p24.1	NR	rs76456563-G	0.01916	8E-14	(RBMX)	0.1494	NR unit increase	Illumina [1671387] (imputed)	N
645	chr9	7925380	7925381	rs1535480	20585627	Eriksson N	2010-06-24	PLoS Genet	Web-based, participant-driven studies yield novel genetic associations for common traits.	Common traits (Other)	9,126 European ancestry individuals	NA	9p24.1	NR	rs1535480-?	NR	4E-7	(braces)			Illumina [535076]	N
645	chr9	7938794	7938795	rs10758915	33491795	Timmer T	2021-01-25	Vox Sang	Genetic determinants of ferritin, haemoglobin levels and haemoglobin trajectories: results from Donor InSight.	Ferritin levels	2,649 European ancestry individuals	NA	9p24.1	TMEM261	rs10758915-T	0.092	1E-7		0.2	[0.13-0.27] unit increase	Affymetrix [7435577] (imputed)	N
645	chr9	7953252	7953253	rs10815728	33491795	Timmer T	2021-01-25	Vox Sang	Genetic determinants of ferritin, haemoglobin levels and haemoglobin trajectories: results from Donor InSight.	Ferritin levels	2,649 European ancestry individuals	NA	9p24.1	TMEM261	rs10815728-T	0.041	8E-7		0.27	[0.16-0.37] unit increase	Affymetrix [7435577] (imputed)	N
645	chr9	7990650	7990651	rs1535478	34356046	Oluwafemi OO	2021-07-01	Genes (Basel)	Genome-Wide Association Studies of Conotruncal Heart Defects with Normally Related Great Vessels in the United States.	Conotruncal heart defects with normally related great vessels	294 European ancestry cases, 2,976 European ancestry controls, 913 cases, 559 controls, 641 trios	NA	9p24.1		rs1535478-?	NR	5E-6				Affymetrix, Illumina [3311160] (imputed)	N
646	chr9	8010673	8010674	rs7041664	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	9p24.1	C9orf123, PTPRD	rs7041664-C		7E-9		0.247	unit decrease	Affymetrix [at least 2696785] (imputed)	N
646	chr9	8010673	8010674	rs7041664	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	9p24.1	C9orf123, PTPRD	rs7041664-C		6E-9		0.166	unit decrease	Affymetrix [at least 2696785] (imputed)	N
646	chr9	8011092	8011093	rs4740923	33232274	Mohammadnejad A	2020-11-24	Aging (Albany NY)	Generalized correlation coefficient for genome-wide association analysis of cognitive ability in twins.	Cognitive function (generalized correlation coefficient)	278 Chinese ancestry dizygotic twins	NA	9p24.1	NR	rs4740923-?	NR	1E-6			[NR]	Illumina [5432814] (imputed)	N
646	chr9	8045605	8045606	rs2146180	23903073	Kim HN	2013-08-01	J Hum Genet	Genome-wide association study of the five-factor model of personality in young Korean women.	Personality dimensions	1,089 Korean ancestry females	2,090 Korean ancestry individuals	9p24.1	PTPRD	rs2146180-G		3E-8	(Openness)	0.06	[-0.0184-0.1384] unit decrease	Illumina [2053685] (imputed)	N
646	chr9	8087318	8087319	rs10815750	31533690	Orlova E	2019-09-18	BMC Oral Health	Pilot GWAS of caries in African-Americans shows genetic heterogeneity.	Dental caries (decayed and filled deciduous tooth surfaces)	96 African American children	NA	9p24.1	NR	rs10815750-?		2E-6		5.522	[3.46-7.58] unit increase	Illumina [~ 4900000] (imputed)	N
646	chr9	8105017	8105018	rs151173222	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	9p24.1		rs151173222-?	NR	3E-10				NR [~ 8900000] (imputed)	N
647	chr9	8147422	8147423	rs34340407	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	9p24.1		rs34340407-?	NR	4E-9				NR [~ 8900000] (imputed)	N
647	chr9	8154985	8154986	rs10976805	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Systolic blood pressure (long-term average)	5,304 African American individuals	6,500 African American individuals	9p24.1	NR	rs10976805-A	0.1318	8E-7		1.4088	[0.85-1.97] mmHg increase	Affymetrix, Illumina [NR] (imputed)	N
647	chr9	8187979	8187980	rs72706422	34437536	Akhtari FS	2021-08-26	PLoS Genet	High-throughput screening and genome-wide analyses of 44 anticancer drugs in the 1000 Genomes cell lines reveals an association of the NQO1 gene with the response of multiple anticancer drugs.	Response to cladaribine	680 lymphoblastoid cell lines from Han Chinese ancestry, Japanese ancestry, Kenyan ancestry, Mexican ancestry, Tuscan ancestry, Yoruban ancestry, British ancestry, Columbian ancestry individuals	NA	9p24.1		rs72706422-?	NR	7E-7				Illumina [1510701]	N
647	chr9	8196510	8196511	rs7044355	20526338	Johnson AD	2010-06-06	Nat Genet	Genome-wide meta-analyses identifies seven loci associated with platelet aggregation in response to agonists.	Platelet aggregation	Up to 3,991 European ancestry individuals	Up to 840 African American individuals	9p24.1	PTPRD	rs7044355-G	0.501	1E-7	(collagen)			Affymetrix, Illumina [~ 2330000] (imputed)	N
647	chr9	8211948	8211949	rs1416584	28429243	Dudenkov TM	2017-04-20	Breast Cancer Res Treat	SLCO1B1 polymorphisms and plasma estrone conjugates in postmenopausal women with ER+ breast cancer: genome-wide association studies of the estrone pathway.	Estrone/androstenedione ratio in resected early stage-receptor positive breast cancer	707 European ancestry postmenopausal cases, 52 African ancestry postmenopausal cases, 15 Asian ancestry postmenopausal cases	NA	9p24.1	PTPRD	rs1416584-G	0.0787	6E-6		0.4453	[0.25-0.64] unit decrease	Illumina [8203257] (imputed)	N
647	chr9	8235632	8235633	rs10815798	18951430	Anney RJ	2008-10-24	Am J Med Genet B Neuropsychiatr Genet	Conduct disorder and ADHD: evaluation of conduct problems as a categorical and quantitative trait in the international multicentre ADHD genetics study.	Attention deficit hyperactivity disorder and conduct disorder	938 European ancestry trios	NA	9p24.1	PTPRD	rs10815798-A	0.48	6E-6				Perlegen [378332]	N
648	chr9	8262413	8262414	rs7042428	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex interaction	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	9p24.1	PTPRD	rs7042428-A	0.98	3E-6				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
648	chr9	8269479	8269480	rs190547703	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9p24.1	NR	rs190547703-A	0.01394	7E-9	(GLUL)	0.2324	NR unit increase	Illumina [1671387] (imputed)	N
648	chr9	8282398	8282399	rs7024924	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	9p24.1	NR	rs7024924-C	0.174	2E-8		0.018891763	[0.012-0.025] unit increase	NR [~ 10000000] (imputed)	N
648	chr9	8284090	8284091	rs10116379	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	9p24.1	NR	rs10116379-T	0.182	1E-10		0.00896933	[0.0062-0.0117] unit increase	NR [9732723] (imputed)	N
648	chr9	8290815	8290816	rs10758950	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	9p24.1	NR	rs10758950-T	0.7077	7E-9		0.026	[0.017-0.035] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
648	chr9	8296739	8296740	rs1392510	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking initiation	842,717 European ancestry individuals	NA	9p24.1	TMEM261, PTPRD	rs1392510-C		3E-8		1.028	[NR]	Affymetrix [up to 79000000] (imputed)	N
648	chr9	8310812	8310813	rs10976942	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	9p24.1		rs10976942-?	NR	3E-9				NR [~ 8900000] (imputed)	N
648	chr9	8346472	8346473	rs12340173	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Pursuit maintenance gain	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	9p24.1	PTPRD	rs12340173-C	0.01378	4E-7	(EA)			Illumina [4404269] (imputed)	N
648	chr9	8356539	8356540	rs7022162	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	9p24.1	PTPRD	rs7022162-C	0.252943	4E-9		0.0125623	[0.0084-0.0167] unit decrease	NR [13737936] (imputed)	N
648	chr9	8363230	8363231	rs77261378	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Alcohol consumption x traumatic event in childhood (felt hated by family member) interaction	46,394 European ancestry individuals	NA	9p24.1		rs77261378-?	NR	3E-8		2.3067	[1.49-3.13] unit increase	Affymetrix [NR] (imputed)	N
648	chr9	8365757	8365758	rs10758961	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	9p24.1		rs10758961-?	NR	7E-10				NR [~ 8900000] (imputed)	N
648	chr9	8374059	8374060	rs10977015	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	L1-L4 bone mineral density x serum urate levels interaction	2,207 men, 2,354 women	NA		PTPRD	rs10977015-?	NR	9E-8		0.58	[NR] unit increase	Affymetrix [NR] (imputed)	N
648	chr9	8376476	8376477	rs1566447	33713768	Akenroye AT	2021-03-10	J Allergy Clin Immunol	Genome-wide Association study of Asthma, Total IgE, and Lung function in a Cohort of Peruvian Children.	Asthma (childhood onset)	436 Peruvian cases, 291 Peruvian controls	NA	9p24.1		rs1566447-?	NR	2E-6		2.5960732	unit increase	Illumina [NR] (imputed)	N
649	chr9	8401020	8401021	rs142199880	28247064	Deming Y	2017-02-28	Acta Neuropathol	Genome-wide association study identifies four novel loci associated with Alzheimer's endophenotypes and disease modifiers.	Cerebrospinal P-tau181p levels	3,146 individuals	NA	9p24.1	PTPRD	rs142199880-G	0.035	3E-6		0.068	[0.041-0.095] unit increase	Illumina [7358575] (imputed)	N
649	chr9	8417500	8417501	rs12377175	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	9p24.1		rs12377175-?	NR	5E-10				NR [~ 8900000] (imputed)	N
649	chr9	8418836	8418837	rs10758971	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	9p24.1		rs10758971-T	0.652	5E-8		0.012	[0.0081-0.0159] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
649	chr9	8424377	8424378	rs12003835	31070104	Jia Q	2019-05-09	J Am Heart Assoc	Genetic Determinants of Circulating Glycine Levels and Risk of Coronary Artery Disease.	Glycine levels	30,118 European ancestry individuals	NA	9p24.1	PTPRD	rs12003835-T	0.026406	8E-9		0.151422	[0.1-0.203] unit increase	Affymetrix, Illumina [7487927] (imputed)	N
649	chr9	8424377	8424378	rs12003835	31070104	Jia Q	2019-05-09	J Am Heart Assoc	Genetic Determinants of Circulating Glycine Levels and Risk of Coronary Artery Disease.	Glycine levels	11,006 European ancestry female individuals	NA	9p24.1	PTPRD	rs12003835-T	0.026406	8E-6		0.199303	[0.11-0.29] unit increase	Affymetrix, Illumina [7487927] (imputed)	N
649	chr9	8446517	8446518	rs72692916	28235828	Traglia M	2017-04-03	G3 (Bethesda)	Independent Maternal and Fetal Genetic Effects on Midgestational Circulating Levels of Environmental Pollutants.	Midgestational circulating levels of PCBs (fetal genetic effect)	764 fetuses	NA	9p24.1	PTPRD	rs72692916-?		8E-7	(PCB180)	0.34	[0.2-0.48] unit decrease	Affymetrix [622716]	N
649	chr9	8446517	8446518	rs72692916	28235828	Traglia M	2017-04-03	G3 (Bethesda)	Independent Maternal and Fetal Genetic Effects on Midgestational Circulating Levels of Environmental Pollutants.	Midgestational circulating levels of PCBs (fetal genetic effect)	764 fetuses	NA	9p24.1	PTPRD	rs72692916-?		7E-6	(PCB194)	0.31	[0.17-0.45] unit decrease	Affymetrix [622716]	N
649	chr9	8446517	8446518	rs72692916	28235828	Traglia M	2017-04-03	G3 (Bethesda)	Independent Maternal and Fetal Genetic Effects on Midgestational Circulating Levels of Environmental Pollutants.	Midgestational circulating levels of PCBs (fetal genetic effect)	764 fetuses	NA	9p24.1	PTPRD	rs72692916-?		3E-8	(PCB187)	0.42	[0.26-0.58] unit decrease	Affymetrix [622716]	N
649	chr9	8446517	8446518	rs72692916	28235828	Traglia M	2017-04-03	G3 (Bethesda)	Independent Maternal and Fetal Genetic Effects on Midgestational Circulating Levels of Environmental Pollutants.	Midgestational circulating levels of PCBs (fetal genetic effect)	764 fetuses	NA	9p24.1	PTPRD	rs72692916-?		3E-8	(PCB187)	0.42	[0.26-0.58] unit decrease	Affymetrix [622716]	N
649	chr9	8446517	8446518	rs72692916	28235828	Traglia M	2017-04-03	G3 (Bethesda)	Independent Maternal and Fetal Genetic Effects on Midgestational Circulating Levels of Environmental Pollutants.	Midgestational circulating levels of PCBs (fetal genetic effect)	764 fetuses	NA	9p24.1	PTPRD	rs72692916-?		2E-6	(PCB196/203)	0.33	[0.19-0.47] unit decrease	Affymetrix [622716]	N
649	chr9	8446517	8446518	rs72692916	28235828	Traglia M	2017-04-03	G3 (Bethesda)	Independent Maternal and Fetal Genetic Effects on Midgestational Circulating Levels of Environmental Pollutants.	Midgestational circulating levels of PCBs (fetal genetic effect)	764 fetuses	NA	9p24.1	PTPRD	rs72692916-?		2E-6	(PCB170)	0.32	[0.18-0.46] unit decrease	Affymetrix [622716]	N
649	chr9	8446517	8446518	rs72692916	28235828	Traglia M	2017-04-03	G3 (Bethesda)	Independent Maternal and Fetal Genetic Effects on Midgestational Circulating Levels of Environmental Pollutants.	Midgestational circulating levels of PCBs (fetal genetic effect)	764 fetuses	NA	9p24.1	PTPRD	rs72692916-?		1E-6	(PCB199)	0.36	[0.22-0.5] unit decrease	Affymetrix [622716]	N
649	chr9	8450637	8450638	rs6477309	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	9p24.1	PTPRD	rs6477309-T	0.6661	5E-15		1.0301		Affymetrix [11880941] (imputed)	N
649	chr9	8450637	8450638	rs6477309	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	9p24.1	PTPRD	rs6477309-T	0.6661	5E-15		1.0313823		Affymetrix [11880941] (imputed)	N
649	chr9	8454920	8454921	rs7870456	33111402	Tan MMX	2020-10-28	Mov Disord	Genome-Wide Association Studies of Cognitive and Motor Progression in Parkinson's Disease.	Parkinson's disease progression (motor)	2,848 individuals	NA	9p24.1	PTPRD	rs7870456-T	0.22	2E-6		0.21	[0.13-0.29] unit increase	Illumina [5918868] (imputed)	N
649	chr9	8456019	8456020	rs1323591	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	9p24.1		rs1323591-T	0.3243	2E-12		0.016	[0.012-0.02] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
649	chr9	8457115	8457116	rs184140292	31014085	Welsh P	2019-04-24	Circulation	Cardiac Troponin T and Troponin I in the General Population: Comparing and Contrasting their Genetic Determinants and Associations with Outcomes.	Cardiac Troponin-T levels	10,395 European ancestry individuals	NA	9p24.1	PTPRD	rs184140292-C		1E-8		0.706	[NR] unit increase	Illumina [24111857] (imputed)	N
649	chr9	8506458	8506459	rs17650729	29738550	de Oliveira Otto MC	2018-05-08	PLoS One	Genome-wide association meta-analysis of circulating odd-numbered chain saturated fatty acids: Results from the CHARGE Consortium.	Circulating odd-numbered chain saturated fatty acid levels (C17:0)	6,016 European ancestry individuals	NA	9p24.1	NR	rs17650729-?	NR	6E-8		0.0324	[0.021-0.044] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
650	chr9	8522325	8522326	rs6477314	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	9p24.1	Intergenic	rs6477314-A	0.1198	4E-8	(MTAG)	0.0111	[0.0072-0.015] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
650	chr9	8545592	8545593	rs76007978	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	9p24.1	NR	rs76007978-A	0.0123	4E-7	(EA)	0.1781	[0.11-0.25] unit decrease	Illumina [~ 11800000] (imputed)	N
650	chr9	8546094	8546095	rs7856850	33531474	Burton CL	2021-02-02	Transl Psychiatry	Genome-wide association study of pediatric obsessive-compulsive traits: shared genetic risk between traits and disorder.	Obsessive-compulsive traits	5,018 European ancestry children and adolescents	NA	9p24.1	PTPRD	rs7856850-?	NR	2E-8		0.14	[0.091-0.189] unit increase	Illumina [7870334] (imputed)	N
651	chr9	8658953	8658954	rs118106262	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	9p24.1	intergenic	rs118106262-G	0.018	8E-6		4.47	[2.19-9.15]	Illumina [1556551]	N
651	chr9	8695094	8695095	rs147513759	34074324	Wan JY	2021-06-01	Diabetol Metab Syndr	Genome-wide association analysis of metabolic syndrome quantitative traits in the GENNID multiethnic family study.	Triglyceride levels	281 African American individuals from 73 families, 516 European ancestry individuals from 75 families, 125 Japanese American individuals from 15 families, 598 Mexican American individuals from 96 families	NA	9p24.1	PTPRD	rs147513759-C	0.01	2E-7	(African American)	1.37	[0.86-1.88] unit increase	Illumina [up to 13042663] (imputed)	N
651	chr9	8695232	8695233	rs16928280	24811271	Kennedy RB	2014-05-09	Immunogenetics	Genome-wide SNP associations with rubella-specific cytokine responses in measles-mumps-rubella vaccine recipients.	Immune response to measles-mumps-rubella vaccine	883 European ancestry individuals	NA	9p24.1	PTPRD	rs16928280-?		3E-10	(IFN gamma response)			Illumina [NR]	N
651	chr9	8712600	8712601	rs10815925	22179738	Lai HM	2011-12-16	Rheumatology (Oxford)	Gout and type 2 diabetes have a mutual inter-dependent effect on genetic risk factors and higher incidences.	Gout	20 Han Chinese ancestry male gout cases, 42 Han Chinese ancestry male controls	NA	9p24.1	PTPRD	rs10815925-?		1E-7				Illumina [479403]	N
651	chr9	8721154	8721155	rs143178747	31073882	Plotnikov D	2019-05-09	Hum Genet	A commonly occurring genetic variant within the NPLOC4-TSPAN10-PDE6G gene cluster is associated with the risk of strabismus.	Strabismus	1,345 British ancestry cases, 65,349 British ancestry controls	116 cases, 5,084 controls	9p24.1	NR	rs143178747-A	0.02	8E-6	(EA)	1.73	[1.36-2.19]	Affymetrix [7469170] (imputed)	N
651	chr9	8766113	8766114	rs185095244	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	9p24.1	PTPRD	rs185095244-A	1.0	2E-6	(AA)	0.389	unit increase	Illumina [NR] (imputed)	N
651	chr9	8773565	8773566	rs142944815	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	9p24.1	PTPRD	rs142944815-G	1.0	2E-6	(AA)	0.39	unit increase	Illumina [NR] (imputed)	N
652	chr9	8817243	8817244	rs1434274	31533690	Orlova E	2019-09-18	BMC Oral Health	Pilot GWAS of caries in African-Americans shows genetic heterogeneity.	Dental caries (decayed and filled deciduous tooth surfaces)	96 African American children	NA	9p24.1	NR	rs1434274-?		5E-6		6.899	[4.34-9.46] unit increase	Illumina [~ 4900000] (imputed)	N
652	chr9	8820572	8820573	rs1836229	33239738	Didriksen M	2020-11-25	Commun Biol	Large genome-wide association study identifies three novel risk variants for restless legs syndrome.	Restless legs syndrome	10,257 European ancestry cases, 470,725 European ancestry controls	up to 15,126 European ancestry cases, up to 95,725 European ancestry controls	9p24.1	PTPRD	rs1836229-G	0.48	6E-22		0.91	[0.89-0.93]	Affymetrix, Illumina [15838848] (imputed)	N
652	chr9	8820572	8820573	rs1836229	29029846	Schormair B	2017-11-01	Lancet Neurol	Identification of novel risk loci for restless legs syndrome in genome-wide association studies in individuals of European ancestry: a meta-analysis.	Restless legs syndrome	15,126 European ancestry cases, 95,725 European ancestry controls	30,770 European ancestry cases, 286,913 European ancestry controls	9p24.1	PTPRD	rs1836229-A	0.52	7E-42		1.1111112	[1.1-1.12]	Affymetrix, Illumina [6864281] (imputed)	N
652	chr9	8823080	8823081	rs74940289	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Rheumatic fever	1,115 European ancestry cases, 88,076 European ancestry controls	NA	9p24.1	NR	rs74940289-?	NR	1E-6		0.844	[0.47-1.22] unit increase	Illumina [at least 560000] (imputed)	N
652	chr9	8845597	8845598	rs1865343	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	9p24.1	NR	rs1865343-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
652	chr9	8845597	8845598	rs1865343	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	9p24.1		rs1865343-?	NR	2E-9				NR [~ 8900000] (imputed)	N
652	chr9	8845910	8845911	rs1865341	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		9p24.1	PTPRD	rs1865341-C	0.238421	3E-8		0.00899606	[0.0058-0.0122] unit decrease	Affymetrix [12370749]	N
652	chr9	8846954	8846955	rs1975197	21779176	Winkelmann J	2011-07-14	PLoS Genet	Genome-wide association study identifies novel restless legs syndrome susceptibility loci on 2p14 and 16q12.1.	Restless legs syndrome	922 European ancestry cases, 1,526 European ancestry controls	3,935 European ancestry cases, 5,754 European ancestry controls	9p24.1	PTPRD	rs1975197-A	0.16	3E-10		1.29	[1.19-1.40]	Affymetrix [301406]	N
652	chr9	8846954	8846955	rs1975197	18660810	Schormair B	2008-07-27	Nat Genet	PTPRD (protein tyrosine phosphatase receptor type delta) is associated with restless legs syndrome.	Restless legs syndrome	628 European ancestry cases, 1,644 European ancestry controls	1,550 European ancestry cases, 2,269 European ancestry controls, 285 French Canadian founder cases, 842 French Canadian founder controls	9p24.1	PTPRD	rs1975197-T	0.16	6E-9		1.31	[1.20-1.44]	Affymetrix [208733]	N
652	chr9	8854068	8854069	rs7466280	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (father's age at death)	309,383 European ancestry individuals	NA	9p24.1	NR	rs7466280-G	NR	5E-6		0.01372	[0.0078-0.0196] unit increase	Illumina [541614]	N
652	chr9	8856374	8856375	rs72704330	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	9p24.1	NA	rs72704330-A	0.16	1E-10	(Male)	1.089	[1.06-1.11]	Affymetrix, Illumina [NR] (imputed)	N
652	chr9	8858042	8858043	rs118166957	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	9p24.1	NR	rs118166957-T	0.1591	2E-16		1.07	[1.05-1.09]	Affymetrix, Illumina [NR] (imputed)	N
652	chr9	8858042	8858043	rs118166957	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	9p24.1	NA	rs118166957-T	0.1637	4E-8	(Female)	1.057	[1.04-1.08]	Affymetrix, Illumina [NR] (imputed)	N
652	chr9	8876257	8876258	rs141541866	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	9p24.1	NR	rs141541866-?	NR	9E-7		0.564262	[0.34-0.79] unit increase	NR [13958389] (imputed)	N
652	chr9	8879117	8879118	rs17584499	20174558	Tsai FJ	2010-02-19	PLoS Genet	A genome-wide association study identifies susceptibility variants for type 2 diabetes in Han Chinese.	Type 2 diabetes	995 Han Chinese ancestry cases, 894 Han Chinese ancestry controls	1,803 Han Chinese ancestry cases, 1,473 Han Chinese ancestry controls	9p24.1	PTPRD	rs17584499-T	0.06	9E-10		1.57	[1.36-1.82]	Illumina [516737]	N
652	chr9	8897186	8897187	rs60250264	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	9p24.1	NR	rs60250264-?	NR	2E-6	(Latino)	1.3059	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
653	chr9	8932703	8932704	rs7033296	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	9p24.1	PTPRD	rs7033296-A	0.200248	2E-8		0.0148722	[0.0098-0.02] unit increase	NR [16516521] (imputed)	N
653	chr9	8987929	8987930	rs9299083	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter alcoholic beverage consumption	336,448 European ancestry individuals	39,924 European ancestry individuals	9p24.1	PTPRD	rs9299083-C	0.238	6E-7		0.006	[0.0036-0.0084] unit increase	Affymetrix [~ 7740000] (imputed)	N
653	chr9	9003281	9003282	rs7040386	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric bone mineral content (radius)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	9p23	NR	rs7040386-T	0.439	7E-6	(Females)	0.208605	[0.12-0.3] unit decrease	Illumina [~ 6600000] (imputed)	N
653	chr9	9014919	9014920	rs7043532	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Short-term memory (digit-span task)	2,591 European ancestry individuals	NA	9p23	PTPRD	rs7043532-G	0.54343	5E-6		0.127403	[0.073-0.182] unit increase	Illumina [6952813] (imputed)	N
653	chr9	9015086	9015087	rs78925264	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Antibody status in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	9p23	NR	rs78925264-?	NR	9E-6				Affymetrix [5486770] (imputed)	N
653	chr9	9020222	9020223	rs378363	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine - clinic-based	5,175 European ancestry clinic-based cases, 13,972 European ancestry clinic-based controls	NA	9p23	intergenic	rs378363-?	0.77	8E-6		1.14	[1.08-1.2]	Affymetrix, Illumina [~ 2300000] (imputed)	N
653	chr9	9038386	9038387	rs113398003	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	9p23	NR	rs113398003-?	NR	5E-6		0.638379	[0.36-0.91] unit increase	NR [13958389] (imputed)	N
653	chr9	9041783	9041784	rs16928808	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	9p23	C9orf123	rs16928808-?	NR	8E-6	(PC 32:0)	0.18112475	[0.1-0.26] unit increase	Affymetrix [at least 2500000] (imputed)	N
654	chr9	9044099	9044100	rs452629	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	9p23	NR	rs452629-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
654	chr9	9054620	9054621	rs324457	27629369	Gao J	2016-09-15	Neuropsychopharmacology	Genome-Wide Association Study of Loneliness Demonstrates a Role for Common Variation.	Loneliness (multivariate analysis)	8,490 European ancestry individuals, 1,228 African American individuals, 867 Hispanic American individuals, 175 individuals	NA	9p23	PTPRD	rs324457-?	NR	3E-6	(EA)			Illumina [7205781] (imputed)	N
654	chr9	9054620	9054621	rs324457	27629369	Gao J	2016-09-15	Neuropsychopharmacology	Genome-Wide Association Study of Loneliness Demonstrates a Role for Common Variation.	Loneliness (linear analysis)	8,490 European ancestry individuals, 1,228 African American individuals, 867 Hispanic American individuals, 175 individuals	NA	9p23	PTPRD	rs324457-?		7E-6	(EA)	0.112	[0.063-0.161] unit increase	Illumina [7205781] (imputed)	N
654	chr9	9054620	9054621	rs324457	27629369	Gao J	2016-09-15	Neuropsychopharmacology	Genome-Wide Association Study of Loneliness Demonstrates a Role for Common Variation.	Loneliness	2,075 European ancestry cases, 3,875 European ancestry controls, 427 African American cases, 398 African American controls, 294 Hispanic cases, 327 Hispanic controls, 57 cases, 73 controls	NA	9p23	PTPRD	rs324457-?	NR	6E-6	(EA)	0.0405	[0.023-0.058] unit increase	Illumina [7176022] (imputed)	N
654	chr9	9059544	9059545	rs324498	30237584	El Rouby N	2018-09-20	Pharmacogenomics J	Genome-wide association analysis of common genetic variants of resistant hypertension.	Resistant hypertension	226 European ancestry cases, 143 Hispanic cases, 431 European ancestry controls, 394 Hispanic controls	71 European ancestry cases, 83 Hispanic cases, 192 European ancestry controls, 239 Hispanic controls	9p23	PTPRD	rs324498-A		1E-6		1.62	[1.30-2.0]	Illumina [696317]	N
654	chr9	9064253	9064254	rs10759036	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Pursuit maintenance gain	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	9p23	PTPRD	rs10759036-C	0.3329	9E-6				Illumina [4404269] (imputed)	N
654	chr9	9065940	9065941	rs10977466	30801121	O'Donnell S	2019-02-25	Inflamm Bowel Dis	The Unsolved Link of Genetic Markers and Crohn's Disease Progression: A North American Cohort Experience.	Crohn's disease (time to progression)	662 European ancestry individuals	NA	9p23	NR	rs10977466-G	0.224215	9E-6				Illumina [5378266] (imputed)	N
654	chr9	9112697	9112698	rs560380	28322283	Chibnik LB	2017-03-21	Mol Psychiatry	Susceptibility to neurofibrillary tangles: role of the PTPRD locus and limited pleiotropy with other neuropathologies.	Neuropathologic traits (pleiotropy)	909 European ancestry individuals	369 individuals	9p23	NR	rs560380-A	0.55	1E-5	(EA)			Affymetrix, Illumina [NR] (imputed)	N
654	chr9	9112697	9112698	rs560380	28322283	Chibnik LB	2017-03-21	Mol Psychiatry	Susceptibility to neurofibrillary tangles: role of the PTPRD locus and limited pleiotropy with other neuropathologies.	Neurofibrillary tangles	909 European ancestry individuals	369 individuals	9p23	NR	rs560380-A	0.55	3E-8	(EA)	0.1	[0.07-0.14] unit increase	Affymetrix, Illumina [NR] (imputed)	N
654	chr9	9138641	9138642	rs2039332	29531279	Zhou S	2018-03-12	Sci Rep	Genome-wide association analysis identifies new candidate risk loci for familial intracranial aneurysm in the French-Canadian population.	Intracranial aneurysm	173 French Canadian cases, 1,772 French Canadian controls	2,617 cases, 1,416 controls	9p23	PTPRD	rs2039332-?		1E-6	(French Canadians)	4.643841		Illumina [7614484] (imputed)	N
654	chr9	9139753	9139754	rs10977524	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota relative abundance (bacterial taxa)	up to 858 Metropolitan French ancestry individuals	NA	9p23	NR	rs10977524-?	NR	5E-9	(Butyricicoccus_pullicaecorum)	0.302611	[0.2-0.4] unit increase	Illumina [5293637] (imputed)	N
654	chr9	9139753	9139754	rs10977524	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota relative abundance (bacterial taxa)	up to 858 Metropolitan French ancestry individuals	NA	9p23	NR	rs10977524-?	NR	5E-9	(Butyricicoccus)	0.302611	[0.2-0.4] unit increase	Illumina [5293637] (imputed)	N
654	chr9	9142492	9142493	rs62529502	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	9p23	NR	rs62529502-?	NR	2E-7	(AA)	1.2801	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
654	chr9	9168730	9168731	rs140120433	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	9p23	NR	rs140120433-?	NR	8E-6		4.453	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
655	chr9	9235200	9235201	rs4742570	29855589	Chernus J	2018-05-31	Sci Rep	GWAS reveals loci associated with velopharyngeal dysfunction.	Velopharyngeal dysfunction	54 Hispanic or Latin American and unknown ancestry cases, 922 Hispanic or Latin American and unknown ancestry controls	NA	9p23	NR	rs4742570-?	NR	9E-6		0.06837928	[NR] unit decrease	Illumina [at least 269494] (imputed)	N
655	chr9	9261736	9261737	rs4626664	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	9p23		rs4626664-A	0.1542	3E-15		0.23306	[0.17-0.29] mmHg increase	Affymetrix, Illumina [242865] (imputed)	N
655	chr9	9261736	9261737	rs4626664	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	9p23		rs4626664-A	0.1542	2E-10		0.11951806	[0.082-0.157] mmHg increase	Affymetrix, Illumina [242866] (imputed)	N
655	chr9	9261736	9261737	rs4626664	18660810	Schormair B	2008-07-27	Nat Genet	PTPRD (protein tyrosine phosphatase receptor type delta) is associated with restless legs syndrome.	Restless legs syndrome	628 European ancestry cases, 1,644 European ancestry controls	1,550 European ancestry cases, 2,269 European ancestry controls, 285 French Canadian founder cases, 842 French Canadian founder controls	9p23	PTPRD	rs4626664-A	0.12	6E-10		1.44	[1.31-1.59]	Affymetrix [208733]	N
655	chr9	9290310	9290311	rs62535767	33239738	Didriksen M	2020-11-25	Commun Biol	Large genome-wide association study identifies three novel risk variants for restless legs syndrome.	Restless legs syndrome	10,257 European ancestry cases, 470,725 European ancestry controls	up to 15,126 European ancestry cases, up to 95,725 European ancestry controls	9p23	PTPRD	rs62535767-T	0.32	5E-14		0.92	[0.89-0.94]	Affymetrix, Illumina [15838848] (imputed)	N
655	chr9	9290310	9290311	rs62535767	29029846	Schormair B	2017-11-01	Lancet Neurol	Identification of novel risk loci for restless legs syndrome in genome-wide association studies in individuals of European ancestry: a meta-analysis.	Restless legs syndrome	15,126 European ancestry cases, 95,725 European ancestry controls	30,770 European ancestry cases, 286,913 European ancestry controls	9p23	PTPRD	rs62535767-C	0.679999999999999	3E-9		1.0638298	[1.04-1.08]	Affymetrix, Illumina [6864281] (imputed)	N
656	chr9	9345504	9345505	rs35331017	32726798	Hong X	2020-07-29	Pediatr Res	Genome-wide association study identifies a novel maternal gene x stress interaction associated with spontaneous preterm birth.	spontaneous preterm birth x maternal stress interaction (1df)	457 African American cases, 1,033 African American controls	171 African American cases, 166 African American controls, 353 European ancestry cases, 385 European ancestry controls	9p23	PTPRD	rs35331017-?	NR	5E-10		0.14	[0.07-0.28]	Illumina [at least 2160368] (imputed)	N
656	chr9	9350705	9350706	rs1332813	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	9p23	PTPRD	rs1332813-T	0.3491	4E-14		0.1965	[0.15-0.25] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
656	chr9	9352370	9352371	rs76776875	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	9p23		rs76776875-A	NR	4E-8		0.0128	[0.0083-0.0173] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
656	chr9	9354302	9354303	rs1547287	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	9p23		rs1547287-?	NR	5E-12				NR [~ 8900000] (imputed)	N
656	chr9	9354530	9354531	rs397894838	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	9p23		rs397894838-A	NR	9E-9		0.0187	[0.012-0.025] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
656	chr9	9370003	9370004	rs139659427	34838041	Naderi E	2021-11-27	J Transl Med	A two-stage genome-wide association study of radiation-induced acute toxicity in head and neck cancer.	radiation-induced toxicity (patient-rated acute sticky saliva)	799 Dutch ancestry individuals	214 Dutch ancestry individuals	9p23		rs139659427-A	NR	2E-7		0.3013	[0.19-0.41] decrease	Illumina [6334277] (imputed)	N
656	chr9	9428409	9428410	rs148326517	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Third ventricle volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	9p23	PTPRD	rs148326517-?		2E-6				Illumina [4322238] (imputed)	N
657	chr9	9450038	9450039	rs145068833	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	9p23	PTPRD	rs145068833-T	0.989	4E-6	(AA)	0.076	unit increase	Illumina [NR] (imputed)	N
657	chr9	9479462	9479463	rs147345944	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	9p23	PTPRD	rs147345944-T	0.992	2E-7		0.063	unit increase	Illumina [NR] (imputed)	N
657	chr9	9479462	9479463	rs147345944	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	9p23	PTPRD	rs147345944-T	0.992	5E-7		0.3	NR unit increase	Illumina [NR] (imputed)	N
657	chr9	9513108	9513109	rs4742607	30808802	Freidin M	2019-02-26	J Med Genet	Genome-wide meta-analysis identifies genetic locus on chromosome 9 associated with Modic changes.	Modic changes	994 European ancestry cases, 835 European ancestry controls	NA	9p23	PTPRD	rs4742607-G	0.538	9E-6		1.3333333	[1.18-1.52]	Illumina [5479070] (imputed)	N
657	chr9	9550388	9550389	rs58823963	26545240	Giri A	2015-11-06	PLoS One	Genetic Determinants of Pelvic Organ Prolapse among African American and Hispanic Women in the Women's Health Initiative.	Pelvic organ prolapse (moderate/severe)	154 African American cases, 948 African American controls, 163 Hispanic cases, 305 Hispanic controls	NA	9p23	PTPRD	rs58823963-A	0.12	9E-7	(Hispanic)	2.69	[1.81-3.99]	Affymetrix [at least 730985] (imputed)	N
658	chr9	9593741	9593742	rs143575776	28043905	Nicoletti P	2016-12-30	Gastroenterology	Association of Liver Injury From Specific Drugs, or Groups of Drugs, With Polymorphisms in HLA and Other Genes in a Genome-Wide Association Study.	Drug-induced liver injury (anti-tuberculosis drugs)	67 European ancestry cases, 10,588 European ancestry controls	NA	9p23		rs143575776-?		2E-7		4.96	2.70-9.09	Illumina [505740] (imputed)	N
658	chr9	9657297	9657298	rs117211761	33223526	Hong S	2020-11-22	Transl Psychiatry	Genome-wide association study of Alzheimer's disease CSF biomarkers in the EMIF-AD Multimodal Biomarker Discovery dataset.	Central cerebrospinal fluid amyloid beta 42 to 40 ratio	677 European ancestry individuals	NA	9p23		rs117211761-T	0.9428	4E-6		0.088	[0.051-0.125] unit increase	Illumina [7778465] (imputed)	N
658	chr9	9668868	9668869	rs12378124	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal cancer	978 Austrian ancestry colorectal cancer cases, 636 Austrian ancestry advanced colorectal adenoma cases, 4,294 European ancestry controls	NA	9p23	Intergenic	rs12378124-?		2E-6		1.41	[NR]	Affymetrix [492217] (imputed)	N
659	chr9	9730365	9730366	rs1934268	30808802	Freidin M	2019-02-26	J Med Genet	Genome-wide meta-analysis identifies genetic locus on chromosome 9 associated with Modic changes.	Modic changes	994 European ancestry cases, 835 European ancestry controls	NA	9p23	PTPRD	rs1934268-T	0.788	7E-9		1.59	[1.36-1.86]	Illumina [5479070] (imputed)	N
659	chr9	9772171	9772172	rs2821508	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-hip ratio	1,254 whole genome sequenced European ancestry individuals, 3,071 whole genome sequenced individuals, 29,723 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,053 Mylopotamos (founder/genetic isolate) individuals, 879 Pomak (founder/genetic isolate) individuals	206,053 European ancestry individuals	9p23	PTPRD	rs2821508-T	0.0892	2E-6		0.0749	[0.044-0.106] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
659	chr9	9783692	9783693	rs4740988	31936517	Cox JW	2020-01-09	J Clin Med	Genome-Wide Association Study of Opioid Cessation.	Opioid use cessation	1,130 African American individuals, 2,919 European ancestry individuals	NA	9p23	PTPRD	rs4740988-T	0.25	2E-6		1.31	[NR]	Illumina [NR] (imputed)	N
659	chr9	9797382	9797383	rs139271658	31311600	Namjou B	2019-07-17	BMC Med	GWAS and enrichment analyses of non-alcoholic fatty liver disease identify new trait-associated genes and pathways across eMERGE Network.	Aspartate aminotransferase levels in non-alcoholic fatty liver disease	1,075 European ancestry individuals	NA	9p23	PTPRD	rs139271658-G	0.0256052	2E-7		0.662866	[0.42-0.91] unit decrease	NR [7263501] (imputed)	N
659	chr9	9799049	9799050	rs10120246	28044437	McDonald MN	2017-01-02	J Cachexia Sarcopenia Muscle	Body mass index change in gastrointestinal cancer and chronic obstructive pulmonary disease is associated with Dedicator of Cytokinesis 1.	Body mass index (change over time) in gastrointestinal cancer or chronic obstructive pulmonary disease	237 COPD cases, 204 GI cancer cases	NA	9p23	PTPRD	rs10120246-?		4E-6		0.08	[0.049-0.111] unit increase	Affymetrix [418365]	N
660	chr9	9857447	9857448	rs17241164	26480920	Sung YJ	2015-10-20	Int J Obes (Lond)	Genome-wide association studies suggest sex-specific loci associated with abdominal and visceral fat.	Subcutaneous adipose tissue	1,152 European ancestry males, 1,361 European ancestry females	NA	9p23	PTPRD	rs17241164-T	0.99	7E-7	(women)	407.73	[NR] unit decrease	Affymetrix, Illumina [2473256] (imputed)	N
660	chr9	9858193	9858194	rs1951850	32572135	Zhao Y	2020-06-22	Sci Rep	Four Loci Are Associated with Cardiorespiratory Fitness and Endurance Performance in Young Chinese Females.	Cardiorespiratory fitness (800m run time)	762 Han Chinese ancestry individuals	NA	9p23	PTPRD	rs1951850-C		3E-7		9.2	[NR] unit increase	Affymetrix, Illumina [5129327] (imputed)	N
660	chr9	9874396	9874397	rs113247409	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9p23	NR	rs113247409-C	0.01045	6E-9	(HRG)	0.1213	NR unit increase	Illumina [1671387] (imputed)	N
660	chr9	9910122	9910123	rs10759102	22837378	Wilk JB	2012-07-26	Am J Respir Crit Care Med	Genome-wide association studies identify CHRNA5/3 and HTR4 in the development of airflow obstruction.	Airflow obstruction	up to 3,368 European ancestry cases, up to 29,507 European ancestry controls	331 European ancestry cases, 2,550 European ancestry controls	9p23	PTPRD	rs10759102-?	0.67	1E-6	(FEV1 65%)	1.23	[NR]	Affymetrix, Illumina [up to 2500000] (imputed)	N
660	chr9	9916466	9916467	rs7867164	31311600	Namjou B	2019-07-17	BMC Med	GWAS and enrichment analyses of non-alcoholic fatty liver disease identify new trait-associated genes and pathways across eMERGE Network.	Non-alcoholic fatty liver disease activity score in non-alcoholic fatty liver disease	235 European ancestry individuals	NA	9p23	PTPRD	rs7867164-C	0.091489	3E-6		1.24853	[0.74-1.76] unit increase	NR [7263501] (imputed)	N
660	chr9	9924723	9924724	rs7849581	23049088	Meng W	2012-10-09	Invest Ophthalmol Vis Sci	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		9p23	PTPRD	rs7849581-?	0.012	9E-7			[NR]	Affymetrix, Illumina [152234]	N
661	chr9	9971409	9971410	rs10978143	30954325	Kamboh MI	2019-03-11	Neurobiol Aging	Population-based genome-wide association study of cognitive decline in older adults free of dementia: identification of a novel locus for the attention domain.	Age-related cognitive decline (language) (slope of z-scores)	1,145 European ancestry individuals	NA	9p23	PTPRD	rs10978143-A	0.26	1E-6		0.22	unit decrease	Illumina [5600000] (imputed)	N
661	chr9	10036568	10036568	rs71321217	26219847	Adams HH	2015-07-28	J Gerontol A Biol Sci Med Sci	Heritability and Genome-Wide Association Analyses of Human Gait Suggest Contribution of Common Variants.	Gait rhythm	2,946 individuals	NA	9p23	PTPRD	rs71321217-?	0.27	8E-7		0.144	[0.087-0.201] unit increase	Illumina [6200000] (imputed)	N
661	chr9	10043013	10043014	rs291272	22832960	Service SK	2012-05-15	Transl Psychiatry	A genome-wide meta-analysis of association studies of Cloninger's Temperament Scales.	Temperament	Up to 12,433 European ancestry individuals	NA	9p23	PTPRD	rs291272-T	0.965	5E-6	(Persistence)	0.2	unit decrease	Affymetrix, Illumina [1252222] (imputed)	N
661	chr9	10043772	10043773	rs291269	29773799	Horikoshi M	2018-05-17	Nat Commun	Elucidating the genetic architecture of reproductive ageing in the Japanese population.	Menarche (age at onset)	67,029 Japanese ancestry women	73,397 European ancestry women	9p23	PTPRD	rs291269-G	0.37	2E-8	(japanese)	0.05	[0.03-0.07] year increase	Illumina [at least 532488] (imputed)	N
661	chr9	10043772	10043773	rs291269	29773799	Horikoshi M	2018-05-17	Nat Commun	Elucidating the genetic architecture of reproductive ageing in the Japanese population.	Menarche (age at onset)	67,029 Japanese ancestry women	73,397 European ancestry women	9p23	PTPRD	rs291269-G	0.37	2E-7				Illumina [at least 532488] (imputed)	N
661	chr9	10054521	10054522	rs447578	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	QRS duration in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	9p23	NR	rs447578-?	NR	6E-6				Affymetrix [5486770] (imputed)	N
661	chr9	10060802	10060803	rs10119582	29773799	Horikoshi M	2018-05-17	Nat Commun	Elucidating the genetic architecture of reproductive ageing in the Japanese population.	Early age at menarche	15,709 Japanese ancestry early age at menarche individuals, 14,557 Japanese ancestry median age at menarche individuals	NA	9p23	PTPRD	rs10119582-C	NR	9E-13		1.17	[1.12-1.23]	Illumina [at least 532488] (imputed)	N
661	chr9	10060842	10060843	rs10958852	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	9p23	NR	rs10958852-?	NR	3E-7	(EA)	0.8906	[0.55-1.23] unit decrease	Illumina [up to 11892802] (imputed)	N
661	chr9	10060842	10060843	rs10958852	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	9p23	NR	rs10958852-?	NR	2E-6	(EA)	0.6831	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
662	chr9	10098042	10098043	rs186991869	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	9p23	PTPRD	rs186991869-C	0.994	2E-6		0.408	NR unit decrease	Illumina [NR] (imputed)	N
662	chr9	10114754	10114755	rs117770885	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	9p23	PTPRD	rs117770885-T	0.992	4E-6		0.382	NR unit decrease	Illumina [NR] (imputed)	N
662	chr9	10126200	10126201	rs159224	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mononucleosis	17,457 European ancestry cases, 68,446 European ancestry controls	NA	9p23	NR	rs159224-?	NR	7E-6		0.0551	[0.031-0.079] unit increase	Illumina [at least 560000] (imputed)	N
662	chr9	10139579	10139580	rs294845	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	9p23	PTPRD	rs294845-A	0.239	7E-6	(Dinner intake, adj TEE )	0.04	[NR] kcal increase	Illumina [899892]	N
662	chr9	10154624	10154625	rs34879014	31206233	Real LM	2019-06-17	Liver Int	A genome-wide association study in low susceptibility to hepatitis C virus infection (GEHEP012 Study).	Low susceptibility to hepatitis C infection	27 Spanish ancestry uninfected high-risk individuals, 804 Spanish ancestry infected individuals	NA	9p23	PTPRD	rs34879014-T	0.1766	7E-6		3.73	[2.14-6.47]	Affymetrix [7675561] (imputed)	N
662	chr9	10192289	10192290	rs294856	24047446	Schosser A	2013-09-19	World J Biol Psychiatry	Genome-wide association study of co-occurring anxiety in major depression.	Anxiety and major depressive disorder	1,080 European ancestry cases, 1,588 European ancestry controls	NA	9p23	PTPRD	rs294856-?	0.58	2E-6		1.34	[NR]	Illumina [471581]	N
663	chr9	10223739	10223740	rs10958960	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Subjective well-being	298,420 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	9p23	NR	rs10958960-C	0.8876	9E-6		0.0185	[0.01-0.027] unit increase	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
663	chr9	10238177	10238178	rs59761926	34380480	Liu J	2021-08-12	BMC Med	Genome-wide association study followed by trans-ancestry meta-analysis identify 17 new risk loci for schizophrenia.	Schizophrenia	26,271 East Asian ancestry cases, 40,071 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	9p23		rs59761926-T	NR	3E-9		0.95		Illumina [NR] (imputed)	N
663	chr9	10238177	10238178	rs59761926	34380480	Liu J	2021-08-12	BMC Med	Genome-wide association study followed by trans-ancestry meta-analysis identify 17 new risk loci for schizophrenia.	Schizophrenia	26,271 East Asian ancestry cases, 40,071 East Asian ancestry controls	NA	9p23		rs59761926-T	NR	2E-7		0.92		Illumina [NR] (imputed)	N
663	chr9	10245827	10245828	rs546218095	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Lean body mass	3,399 whole genome sequenced individuals, 11,801 European ancestry individuals	10,676 European ancestry individuals	9p23	PTPRD	rs546218095-T	0.0025	8E-6		0.5918	[0.33-0.85] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
663	chr9	10251491	10251492	rs1322148	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	9p23		rs1322148-?	NR	3E-8				NR [~ 8900000] (imputed)	N
663	chr9	10255539	10255540	rs4740446	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	9p23	NR	rs4740446-T	NR	7E-6		1.05	[NR]	Illumina [7158791] (imputed)	N
663	chr9	10259149	10259150	rs10958981	29703947	Jawinski P	2018-04-27	Mol Psychiatry	Human brain arousal in the resting state: a genome-wide association study.	Resting-state electroencephalogram vigilance	1,877 European ancestry individuals	NA	9p23	PTPRD	rs10958981-G	0.984	4E-6	(Stability score)	2.4768	[1.43-3.53] unit increase	Affymetrix [8042262] (imputed)	N
663	chr9	10260262	10260263	rs2475335	29608257	Painter JN	2018-04-02	Cancer Med	Genetic overlap between endometriosis and endometrial cancer: evidence from cross-disease genetic correlation and GWAS meta-analyses.	Endometriosis or endometrial cancer (pleiotropy)	3,194 endometriosis cases, 5,330 non-endometriosis controls, 2,057 endometrial cancer cases, 3,866 non-endometrial cancer controls	NA	9p23	PTPRD	rs2475335-T	NR	2E-6		1.15	[1.09-1.21]	Illumina [462430]	N
663	chr9	10260262	10260263	rs2475335	20522523	Kasperaviciute D	2010-06-03	Brain	Common genetic variation and susceptibility to partial epilepsies: a genome-wide association study.	Partial epilepsies	Up to 3,445 European ancestry cases, 6,935 European ancestry controls	NA	9p23	PTPRD	rs2475335-?	NR	9E-6				Illumina [528745]	N
663	chr9	10266785	10266786	rs1923357	30093612	O'Mara TA	2018-08-09	Nat Commun	Identification of nine new susceptibility loci for endometrial cancer.	Endometrial cancer (endometrioid histology)	8,758 European ancestry cases, 46,126 European ancestry controls	NA	9p23	PTPRD	rs1923357-C	0.17754999999999999	6E-7		1.12	[1.07-1.17]	Affymetrix, Illumina [~ 11700000] (imputed)	N
663	chr9	10274079	10274080	rs7865468	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	9p23	PTPRD	rs7865468-A	0.7	1E-7		0.03	[0.02-0.04] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
663	chr9	10275797	10275798	rs10958998	24556642	Zeng Z	2014-02-18	Caries Res	Genome-wide association study of primary dentition pit-and-fissure and smooth surface caries.	Pit-and-Fissure caries	979 European ancestry individuals	NA	9p23	PTPRD	rs10958998-A	0.0289	4E-6		1.194	[NR] unit decrease	Illumina [1216074] (imputed)	N
664	chr9	10369008	10369009	rs1323489	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	9p23		rs1323489-?	NR	5E-8				NR [~ 8900000] (imputed)	N
664	chr9	10395254	10395255	rs11793419	26545630	Deming Y	2015-09-25	Neurobiol Aging	A potential endophenotype for Alzheimer's disease: cerebrospinal fluid clusterin.	Plasma clusterin levels	521 Alzheimer's disease cases, 297 controls	NA	9p23	PTPRD	rs11793419-?		5E-6				Illumina [5970354] (imputed)	N
664	chr9	10430601	10430602	rs649891	21647700	Below JE	2011-06-07	Diabetologia	Genome-wide association and meta-analysis in populations from Starr County, Texas, and Mexico City identify type 2 diabetes susceptibility loci and enrichment for expression quantitative trait loci in top signals.	Type 2 diabetes	837 Mexican American cases, 436 Mexican American controls	967 Mexican ancestry cases, 343 Mexican ancestry controls	9p23	PTPRD	rs649891-C	0.35	6E-6				Affymetrix [1829586] (imputed)	N
664	chr9	10433022	10433023	rs669484	27490719	Bacelis J	2016-08-04	PLoS One	Literature-Informed Analysis of a Genome-Wide Association Study of Gestational Age in Norwegian Women and Children Suggests Involvement of Inflammatory Pathways.	Gestational age at birth (child effect)	1,109 Norwegian ancestry children	NA	9p23	NR	rs669484-C		4E-6				NR [525577]	N
664	chr9	10436920	10436921	rs620558	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	9p23	Intergenic	rs620558-A	0.9484	5E-8	(MTAG)	0.0221	[0.014-0.03] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
664	chr9	10468783	10468784	rs10809095	34586716	Chen J	2021-09-29	Mol Genet Genomic Med	Heritability and genome-wide association study of blood pressure in Chinese adult twins.	Pulse pressure	137 Chinese ancestry twins	NA	9p23		rs10809095-?	NR	7E-6				Illumina [7401356] (imputed)	N
665	chr9	10505223	10505224	rs72700966	23962720	Speed D	2013-08-19	Hum Mol Genet	A genome-wide association study and biological pathway analysis of epilepsy prognosis in a prospective cohort of newly treated epilepsy.	Epilepsy (remission after treatment)	889 European and unknown ancestry epilepsy cases	NA	9p23	PTPRD	rs72700966-C	0.92	3E-7		2.7	[NR]	Illumina [6923995] (imputed)	N
665	chr9	10512306	10512307	rs2784598	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	9p23	NR	rs2784598-?	NR	3E-12				Affymetrix [NR]	N
665	chr9	10513692	10513693	rs10115899	34748635	Miranda JP	2021-11-08	J Clin Endocrinol Metab	Genome-Wide Association Study And Polygenic Risk Scores Of Serum Dheas Levels In A Chilean Children Cohort.	DHEAS levels	788 Hispanic or Latin American individuals	NA	9p23	PTPRD	rs10115899-C	0.362	7E-6		0.06	unit decrease	Illumina [5510858] (imputed)	N
665	chr9	10521067	10521068	rs118031671	33979322	Currant H	2021-05-12	PLoS Genet	Genetic variation affects morphological retinal phenotypes extracted from UK Biobank optical coherence tomography images.	Retinal nerve fibre layer thickness or ganglion cell inner plexiform layer thickness (MTAG)	31,434 European ancestry individuals	NA	9p23	NR	rs118031671-G	0.01	3E-9		0.93	[0.62-1.24] unit increase	Affymetrix [9231066] (imputed)	N
665	chr9	10521067	10521068	rs118031671	33979322	Currant H	2021-05-12	PLoS Genet	Genetic variation affects morphological retinal phenotypes extracted from UK Biobank optical coherence tomography images.	Retinal nerve fibre layer (RNFL) thickness	31,434 European ancestry individuals	NA	9p23	NR	rs118031671-G	0.01	3E-9		0.93	[0.62-1.24] unit increase	Affymetrix [9231066] (imputed)	N
665	chr9	10530737	10530738	rs142015091	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	9p23	PTPRD	rs142015091-C	0.996	5E-6	(AA)	0.288	NR unit increase	Illumina [NR] (imputed)	N
665	chr9	10550203	10550204	rs1535459	26674333	Traylor M	2015-12-16	Neurology	Genome-wide meta-analysis of cerebral white matter hyperintensities in patients with stroke.	White matter hyperintensities in ischemic stroke	3,670 European ancestry cases	NA	9p23	PTPRD	rs1535459-C	0.98	3E-7		1.87	[1.47-2.38]	Affymetrix, Illumina [7567914] (imputed)	N
665	chr9	10557581	10557582	rs17203373	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		PTPRD	rs17203373-?	NR	3E-9	(male)	2.66057	[NR] unit decrease	Affymetrix [NR] (imputed)	N
665	chr9	10562977	10562978	rs56280034	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	9p23	PTPRD	rs56280034-G	0.113565949333471	3E-6	(G_unclassified_P_Firmicutes_HB)	0.516295	[0.3-0.73] unit decrease	Illumina [7711310] (imputed)	N
665	chr9	10579594	10579595	rs76812958	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Bacillus velezensis abundance in stool	5,959 Finnish ancestry individuals	NA	9p23		rs76812958-G	0.0722922	4E-8		0.0594986	[0.038-0.081] unit increase	Illumina [7980478] (imputed)	N
665	chr9	10582444	10582445	rs1322281	27622933	Li QS	2016-09-13	Transl Psychiatry	Analysis of 23andMe antidepressant efficacy survey data: implication of circadian rhythm and neuroplasticity in bupropion response.	Non-response to antidepressants and depression	1,311 European ancestry non-responder cases, 192,178 European ancestry healthy controls	NA	9p23	PTPRD	rs1322281-?		1E-6		1.242	[1.139-1.354]	Illumina [~ 12000000] (imputed)	N
665	chr9	10594634	10594635	rs35287509	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	NA	9p23	PTPRD	rs35287509-T	0.6622	4E-9		0.1082	[0.072-0.144] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
665	chr9	10599096	10599097	rs77236901	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9p23	NR	rs77236901-T	0.01742	5E-9	(IGHM)	0.2141	NR unit increase	Illumina [1671387] (imputed)	N
665	chr9	10616363	10616364	rs9298661	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	9p23	Intergenic	rs9298661-G	NR	9E-6	(men)	0.0307108	[0.017-0.044] unit increase	Illumina [13520550] (imputed)	N
666	chr9	10617403	10617404	rs10959202	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Faecalicatena sp001517425 abundance in stool	5,959 Finnish ancestry individuals	NA	9p23		rs10959202-A	0.317542	3E-8		0.0367377	[0.024-0.05] unit increase	Illumina [7980478] (imputed)	N
666	chr9	10687127	10687128	rs16926287	31985465	Chen SD	2020-01-20	J Alzheimers Dis	Genome-Wide Association Study Identifies SLAMF1 Affecting the Rate of Memory Decline.	Memory decline	709 European ancestry individuals	NA	9p23	NR	rs16926287-?		1E-7		0.0075	[NR] unit increase	Illumina [1197412]	N
667	chr9	10753413	10753414	rs10738186	29478698	Cheng Z	2018-01-11	Biol Psychiatry	Genome-wide Association Study Identifies a Regulatory Variant of RGMA Associated With Opioid Dependence in European Americans.	Opioid dependence	3,058 European ancestry individuals	2,014 African American individuals	9p23	NR	rs10738186-?	NR	1E-6	(EA)	1.61	unit decrease	Illumina [at least 4700000] (imputed)	N
667	chr9	10789391	10789392	rs10809191	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	RANTES levels	3,421 Finnish ancestry individuals	NA	9p23	NR	rs10809191-C		9E-6		0.1592	[0.089-0.229] SD units decrease	NR [10700000] (imputed)	N
667	chr9	10859620	10859621	rs76258469	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Lingual gyrus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	9p23	NR	rs76258469-?		4E-6				Illumina [4322238] (imputed)	N
667	chr9	10865385	10865386	rs78322468	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Total grey matter volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	9p23	NR	rs78322468-?		1E-6				Illumina [4322238] (imputed)	N
668	chr9	10881230	10881231	rs113399772	25993607	de Moor MH	2015-05-20	JAMA Psychiatry	Meta-analysis of Genome-wide Association Studies for Neuroticism, and the Polygenic Association With Major Depressive Disorder.	Neuroticism	Up to 627 Cilento (founder/genetic isolate) individuals, up to 2,296 Erasmus Rucphen (founder/genetic isolate) individuals, up to 1,650 Orcadian (founder/genetic isolate) individuals, up to 909 Vis (founder/genetic isolate) individuals, up to 58,179 European ancestry individuals	Up to 9,786 European ancestry individuals	9p23	NR	rs113399772-A	NR	2E-6		0.061	[0.034-0.088] unit increase	Affymetrix, Illumina, Perlegen [6949614] (imputed)	N
668	chr9	10944940	10944941	rs139279324	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (executive function) x major depressive disorder interaction (2df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	9p23		rs139279324-A	0.98	4E-8				NR [NR] (imputed)	N
668	chr9	10953548	10953549	rs10959397	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	9p23	TYRP1	rs10959397-?	NR	7E-6	(LPC 22:6)	0.3907985	[0.22-0.56] unit decrease	Affymetrix [at least 2500000] (imputed)	N
668	chr9	10981068	10981069	rs6474609	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	9p23		rs6474609-T	0.415	4E-12		0.008	[0.006-0.01] unit increase	NR [NR] (imputed)	N
668	chr9	10981068	10981069	rs6474609	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	9p23	TYRP1	rs6474609-A	0.588	7E-9		0.01275978	[0.0084-0.0171] unit decrease	Affymetrix [11514654] (imputed)	N
668	chr9	10981068	10981069	rs6474609	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	9p23	TYRP1	rs6474609-A	0.588	1E-9		0.015916662	[0.011-0.021] unit decrease	Affymetrix [~ 11515000] (imputed)	N
668	chr9	10981068	10981069	rs6474609	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	9p23	NR	rs6474609-A	0.586731	2E-9	(Conditioned on chr9:11161799)	0.015588739	[0.011-0.021] unit decrease	NR [~ 10000000] (imputed)	N
668	chr9	10981713	10981714	rs10756153	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	9p23		rs10756153-?	NR	3E-8				NR [~ 8900000] (imputed)	N
668	chr9	10990045	10990046	rs1330257	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota alpha diversity (Shannon index)	1,068 Japanese ancestry individuals	NA	9p23	intergenic	rs1330257-G	0.38	5E-6		0.133	[0.076-0.19] unit increase	Illumina [6380737] (imputed)	N
668	chr9	10990045	10990046	rs1330257	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota alpha diversity (PD_whole_tree index)	1,068 Japanese ancestry individuals	NA	9p23	intergenic	rs1330257-G	0.38	7E-7		0.907	[0.55-1.26] unit increase	Illumina [6380737] (imputed)	N
668	chr9	11005040	11005041	rs4271063	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	9p23	NR	rs4271063-A	0.448008602327606	3E-8		0.0051097856	[0.0033-0.0069] unit decrease	NR [NR]	N
669	chr9	11023587	11023588	rs113048739	28203683	Heit JA	2017-02-16	Thromb Haemost	Identification of unique venous thromboembolism-susceptibility variants in African-Americans.	Venous thromboembolism adjusted for sickle cell variant rs77121243-T	393 African American cases, 4,941 African American controls.	NR	9p23	LOC646114	rs113048739-A	0.0128	3E-6		3.532	[2.073-6.02]	Affymetrix, Illumina [14074516] (imputed)	N
669	chr9	11039638	11039639	rs7044282	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota alpha diversity (Chao1 index)	1,068 Japanese ancestry individuals	NA	9p23	intergenic	rs7044282-T	0.34	3E-6		35.5	[20.8-50.2] unit increase	Illumina [6380737] (imputed)	N
669	chr9	11045907	11045908	rs10809307	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interferon gamma-induced protein 10 levels	3,685 Finnish ancestry individuals	NA	9p23	NR	rs10809307-C		4E-6		0.1305	[0.075-0.186] SD units decrease	NR [10700000] (imputed)	N
669	chr9	11064848	11064849	rs143057876	31194736	Tiensuu H	2019-06-13	PLoS Genet	Risk of spontaneous preterm birth and fetal growth associates with fetal SLIT2.	Moderate-to-late spontaneous preterm birth	75 Finnish ancestry infant cases, 419 Finnish ancestry infant controls	NA	9p23	PTPRD, LOC105375974	rs143057876-?	NR	4E-6		4.31		Illumina [6778521] (imputed)	N
669	chr9	11081181	11081182	rs17234745	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	9p23	NR	rs17234745-C	0.152	2E-14		0.0116181	[0.0087-0.0146] unit decrease	NR [9732723] (imputed)	N
669	chr9	11113890	11113891	rs72694240	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	9p23	NR	rs72694240-G	0.161314395737591	2E-12		0.011856092	[0.0086-0.0151] unit decrease	NR [NR]	N
669	chr9	11114857	11114858	rs13288988	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	9p23	NR	rs13288988-T	0.0637	4E-6	(Trans-16:1n-7, EA)	0.0051	[0.0029-0.0073] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
669	chr9	11115944	11115945	rs72694244	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Neuroticism	170,911 European ancestry individuals	NA	9p23	NR	rs72694244-A	0.858	6E-7		0.024573836	[0.015-0.034] unit increase	Affymetrix [up to 6544775] (imputed)	N
669	chr9	11124107	11124108	rs1981075	33235445	Lee YJ	2020-11-17	Int J Chron Obstruct Pulmon Dis	A Genome-Wide Association Study in Early COPD: Identification of One Major Susceptibility Loci.	Early chronic obstructive pulmonary disease	130 Korean ancestry cases, 3,478 Korean ancestry controls	NA	9p23	NR	rs1981075-?	NR	5E-6		2.39	NR	Affymetrix [345072]	N
669	chr9	11130262	11130263	rs72694255	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	9p23	NR	rs72694255-C	NR	3E-8		5.532	z score decrease	Affymetrix [10847151] (imputed)	N
669	chr9	11130397	11130398	rs2151715	29356057	Du Z	2018-01-21	Prostate	Genetic risk of prostate cancer in Ugandan men.	Prostate cancer	560 Ugandan ancestry cases, 480 Ugandan ancestry controls	NA	9p23	NR	rs2151715-G	0.7	3E-6		1.74	[1.38-2.18]	Illumina [17125421] (imputed)	N
669	chr9	11131370	11131371	rs10959554	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	9p23	NR	rs10959554-A	NR	2E-9		6.022	z score increase	Affymetrix [10847151] (imputed)	N
669	chr9	11133112	11133113	rs1931408	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	9p23	NR	rs1931408-A	0.479	2E-8		0.00821249	[0.0053-0.0111] unit decrease	NR [9732723] (imputed)	N
669	chr9	11136284	11136285	rs7870863	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	9p23	NR	rs7870863-A	0.0623	4E-6	(Trans-16:1n-7, EA)	0.0048	[0.0028-0.0068] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
669	chr9	11139179	11139180	rs10959560	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	9p23	NR	rs10959560-T	0.189246817275237	6E-14		0.011536464	[0.0085-0.0145] unit decrease	NR [NR]	N
669	chr9	11139179	11139180	rs10959560	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	9p23	NR	rs10959560-T	0.189246817275237	8E-16		0.015119668	[0.011-0.019] unit decrease	NR [NR]	N
669	chr9	11139179	11139180	rs10959560	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	9p23	NR	rs10959560-T	0.189246817275237	8E-16		0.009655622	[0.0073-0.012] unit decrease	NR [NR]	N
669	chr9	11140256	11140257	rs72694263	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	9p23	NR	rs72694263-C	0.0825767386815671	7E-11		0.010882268	[0.0076-0.0142] unit decrease	NR [NR]	N
670	chr9	11155054	11155055	rs72694269	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	9p23	NR	rs72694269-T	NR	3E-11		6.641	z score decrease	Affymetrix [10847151] (imputed)	N
670	chr9	11155054	11155055	rs72694269	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	9p23	NR	rs72694269-T	0.10113	1E-9		6.06	z score decrease	NR [10847151] (imputed)	N
670	chr9	11155054	11155055	rs72694269	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	9p23	intergenic	rs72694269-T	0.10113	9E-14		7.461	z score decrease	Illumina [18485882] (imputed)	N
670	chr9	11161798	11161799	rs1931431	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	9p23	NR	rs1931431-C	0.478	3E-15		0.00851481	[0.0064-0.0106] unit increase	NR [9732723] (imputed)	N
670	chr9	11161798	11161799	rs1931431	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	9p23	NR	rs1931431-C	0.478	9E-13		0.018232862	[0.013-0.023] unit increase	NR [~ 10000000] (imputed)	N
670	chr9	11177421	11177422	rs1931386	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	9p23	TYRP1	rs1931386-C	0.4947	6E-10		0.012429827	[0.0085-0.0164] unit increase	Affymetrix [11514654] (imputed)	N
670	chr9	11178029	11178030	rs10756197	32589924	Bi W	2020-06-23	Am J Hum Genet	A Fast and Accurate Method for Genome-Wide Time-to-Event Data Analysis and Its Application to UK Biobank.	Essential hypertension (time to event)	76,566 British ancestry cases, 206,305 British ancestry controls	NA	9p23	PTPRD-AS2, TYRP143	rs10756197-?	NR	3E-8				NR [~ 24000000] (imputed)	N
670	chr9	11188862	11188863	rs75166796	30704525	Guyatt AL	2019-01-31	Hum Genomics	A genome-wide association study of mitochondrial DNA copy number in two population-based cohorts.	Mitochondrial DNA copy number	3,647 European ancestry children	NA	9p23	PTPRD-AS2, TYRP1	rs75166796-G	NR	2E-7		0.517	[0.32-0.71] unit decrease	Illumina [7410776] (imputed)	N
670	chr9	11194114	11194115	rs10125755	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Longevity	up to 482,000 European ancestry individuals	NA	9p23	NR	rs10125755-A	NR	4E-6		0.009419	[0.0054-0.0134] unit decrease	Illumina [~ 540852]	N
670	chr9	11203148	11203149	rs1931388	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Major depressive disorder (MTAG)	at least 170,756 European ancestry cases, at least 329,443 European ancestry controls	NA	9p23	NR	rs1931388-A	0.5958	2E-10		0.02696083	[0.019-0.035] unit increase	NR [NR]	N
670	chr9	11208994	11208995	rs10809385	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	9p23	NR	rs10809385-A	0.4042	6E-8		0.0065	[0.0041-0.0089] unit decrease	NR [7666894] (imputed)	N
670	chr9	11213673	11213674	rs1931391	32959083	Adewuyi EO	2020-09-21	Hum Genet	Genetic analysis of endometriosis and depression identifies shared loci and implicates causal links with gastric mucosa abnormality.	Endometriosis or depression (pleiotropy)	17,054 endometriosis cases, 170,756 European ancestry depression cases, 191,858 controls, 329,443 European ancestry controls	NA	9p23	NR	rs1931391-A		8E-9		0.0235744	[0.016-0.032] unit increase	NR [6694342]	N
670	chr9	11220985	11220986	rs10959631	29317602	Hall LS	2018-01-10	Transl Psychiatry	Genome-wide meta-analyses of stratified depression in Generation Scotland and UK Biobank.	Recurrent major depressive disorder	7,345 European ancestry female cases, 32,211 European ancestry female controls	NA	9p23	intergenic	rs10959631-T	0.2	8E-7		0.12	[0.081-0.159] unit decrease	Affymetrix, Illumina [7105178] (imputed)	N
670	chr9	11220985	11220986	rs10959631	29317602	Hall LS	2018-01-10	Transl Psychiatry	Genome-wide meta-analyses of stratified depression in Generation Scotland and UK Biobank.	Major depressive disorder	6,997 European ancestry female cases, 16,172 European ancestry female controls, 3,852 European ancestry male cases, 16,034 European ancestry male controls	NA	9p23	intergenic	rs10959631-T	NR	4E-6		0.1	[0.061-0.139] unit decrease	Affymetrix, Illumina [7105178] (imputed)	N
670	chr9	11242154	11242155	rs745486	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	9p23	NR	rs745486-C	0.718603	1E-10		0.0213054	[0.015-0.028] unit increase	Affymetrix [16577424] (imputed)	N
670	chr9	11256040	11256041	rs11515172	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder	29,475 European ancestry cases, 63,482 European ancestry controls	NA	9p23	NR	rs11515172-T	0.784243	4E-8		1.0869565	[1.06-1.12]	Affymetrix [7791636] (imputed)	N
670	chr9	11256917	11256918	rs10117184	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling hurt	372,047 European ancestry individuals	NA	9p23	NR	rs10117184-A	0.231023	9E-9		5.75	z score increase	NR [10847151] (imputed)	N
670	chr9	11257040	11257041	rs11496294	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	9p23	NR	rs11496294-C	NR	1E-11		6.768	z score increase	Affymetrix [10847151] (imputed)	N
670	chr9	11257040	11257041	rs11496294	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	9p23	NR	rs11496294-C	0.224224	6E-9		5.81	z score increase	NR [10847151] (imputed)	N
670	chr9	11257447	11257448	rs10959672	22952603	Hart AB	2012-08-28	PLoS One	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 10 individuals	NA	9p23	intergenic	rs10959672-?	NR	5E-7	(SF1)			Affymetrix [5476100] (imputed)	N
671	chr9	11310611	11310612	rs10125961	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	9p23	NR	rs10125961-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
671	chr9	11315720	11315721	rs72696282	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Neuroticism (MTAG)	168,105 European ancestry individuals	NA	9p23	NR	rs72696282-G	0.9524	1E-8		0.0383	[0.025-0.051] unit increase	Illumina [NR] (imputed)	N
671	chr9	11345137	11345138	rs12552533	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	9p23	NR	rs12552533-T	0.274165475550718	2E-11		0.0068807066	[0.0049-0.0089] unit increase	NR [NR]	N
671	chr9	11345137	11345138	rs12552533	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	9p23	NR	rs12552533-T	0.274165475550718	5E-10		0.008341045	[0.0057-0.011] unit increase	NR [NR]	N
671	chr9	11345137	11345138	rs12552533	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	9p23	NR	rs12552533-T	0.274165475550718	5E-10		0.010812267	[0.0074-0.0142] unit increase	NR [NR]	N
671	chr9	11345137	11345138	rs12552533	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	9p23	NR	rs12552533-T	0.274165475550718	9E-10		0.0071137203	[0.0048-0.0094] unit increase	NR [NR]	N
671	chr9	11353511	11353512	rs2152261	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	9p23		rs2152261-?	NR	2E-13				NR [~ 8900000] (imputed)	N
671	chr9	11366548	11366549	rs10809441	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	9p23	NR	rs10809441-T	0.448263991036496	1E-9		0.00841269	[0.0057-0.0111] unit decrease	NR [NR]	N
671	chr9	11366988	11366989	rs10959745	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	9p23	NR	rs10959745-?	NR	1E-25				Affymetrix [NR]	N
671	chr9	11369212	11369213	rs12378446	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	9p23	NR	rs12378446-C	0.20772	1E-10		0.035464	[0.025-0.046] unit decrease	Illumina [18485882] (imputed)	N
671	chr9	11369212	11369213	rs12378446	27067015	Smith DJ	2016-04-12	Mol Psychiatry	Genome-wide analysis of over 106 000 individuals identifies 9 neuroticism-associated loci.	Neuroticism	91,370 European ancestry individuals, 15,346 individuals	NA	9p23	PTRD	rs12378446-T	0.791	9E-9		0.1	[0.067-0.133] unit increase	Affymetrix [7207648] (imputed)	N
671	chr9	11379629	11379630	rs10959753	31926635	Coleman JRI	2019-11-01	Biol Psychiatry	The Genetics of the Mood Disorder Spectrum: Genome-wide Association Analyses of More Than 185,000 Cases and 439,000 Controls.	Bipolar disorder or major depressive disorder	164,933 European ancestry major depressive disorder cases, 20,352 European ancestry bipolar disorder cases, 439,741 European ancestry controls	NA	9p23	NR	rs10959753-C	NR	1E-13		1.0416667		NR [NR] (imputed)	N
671	chr9	11400077	11400078	rs10959767	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	9p23	NR	rs10959767-G	0.217619514962818	1E-15		0.016597535	[0.013-0.021] unit decrease	NR [NR]	N
671	chr9	11400077	11400078	rs10959767	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	9p23	NR	rs10959767-G	0.217619514962818	1E-15		0.010599162	[0.008-0.0132] unit decrease	NR [NR]	N
671	chr9	11402318	11402319	rs10809457	23362303	Wu JH	2013-01-29	Circ Cardiovasc Genet	Genome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortium.	Palmitic acid (16:0) levels	8,961 European ancestry individuals		9p23	PTPRD	rs10809457-T	NR	9E-7		0.1394	unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
672	chr9	11421770	11421771	rs7045135	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Depression	at least 5,919 European ancestry cases, at least 130,691 European ancestry controls	634,037 European ancestry cases, 1,308,690 European ancestry controls	9p23	RP11, 23D5.1	rs7045135-T	0.3966	4E-14		0.017221307	[0.012-0.022] unit increase	NR [9417325] (imputed)	N
672	chr9	11425444	11425445	rs2105054	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	9p23	NA	rs2105054-T	0.4381	3E-12		0.012	[0.0087-0.0153] unit decrease	NR [~ 27400000] (imputed)	N
672	chr9	11431989	11431990	rs10959797	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling worry	372,869 European ancestry individuals	NA	9p23	NR	rs10959797-A	0.209896	2E-8		5.581	unit decrease	NR [10847151] (imputed)	N
672	chr9	11439338	11439339	rs4596736	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	9p23	NR	rs4596736-C	NR	7E-9		5.784	z score increase	Affymetrix [10847151] (imputed)	N
672	chr9	11442764	11442765	rs7043405	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	9p23	NR	rs7043405-?	NR	7E-17				Affymetrix [NR]	N
672	chr9	11445539	11445540	rs10959812	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on self-rated math ability (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	9p23		rs10959812-?	NR	5E-13				NR [NR]	N
672	chr9	11445597	11445598	rs10959813	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Experiencing mood swings	373,733 European ancestry individuals	NA	9p23	NR	rs10959813-A	0.210904	2E-9		6.0	z score decrease	NR [10847151] (imputed)	N
672	chr9	11448076	11448077	rs970361	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	9p23	NR	rs970361-T	NR	7E-10		6.174	z score decrease	Affymetrix [10847151] (imputed)	N
672	chr9	11449345	11449346	rs62550480	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	9p23	NR	rs62550480-T	NR	1E-12		7.136	z score decrease	Affymetrix [10847151] (imputed)	N
672	chr9	11449345	11449346	rs62550480	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	9p23	NR	rs62550480-T	0.214237	9E-11		6.48	z score decrease	NR [10847151] (imputed)	N
672	chr9	11452407	11452408	rs2095484	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	9p23	NR	rs2095484-C	0.3881	2E-9		0.015220876	[0.01-0.02] unit decrease	Affymetrix [10549349] (imputed)	N
672	chr9	11453148	11453149	rs56116032	31168069	Ward J	2019-06-05	Mol Psychiatry	The genomic basis of mood instability: identification of 46 loci in 363,705 UK Biobank participants, genetic correlation with psychiatric disorders, and association with gene expression and function.	Mood instability	157,039 European ancestry cases, 206,666 European ancestry controls	NA	9p23	intergenic	rs56116032-?	NR	6E-11		0.0090228	[0.0063-0.0117] unit increase	Affymetrix [NR] (imputed)	N
672	chr9	11453148	11453149	rs56116032	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	9p23	ENSG00000230365	rs56116032-A	NR	7E-10		0.010574	[0.0072-0.0139] unit decrease	Affymetrix [18485882] (imputed)	N
672	chr9	11453148	11453149	rs56116032	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	9p23		rs56116032-?	NR	7E-12				NR [~ 8900000] (imputed)	N
672	chr9	11453148	11453149	rs56116032	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	9p23	NR	rs56116032-G	0.2215	8E-8		0.0076	[0.0049-0.0103] unit decrease	NR [7666894] (imputed)	N
672	chr9	11453148	11453149	rs56116032	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	9p23	intergenic	rs56116032-A	0.78763	2E-16		8.255	z score increase	Illumina [18485882] (imputed)	N
672	chr9	11455954	11455955	rs10491952	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	9p23	NR	rs10491952-T	0.215739417940729	6E-17		0.009349211	[0.0072-0.0115] unit decrease	NR [NR]	N
672	chr9	11459409	11459410	rs10959826	29187730	Ward J	2017-11-30	Transl Psychiatry	Genome-wide analysis in UK Biobank identifies four loci associated with mood instability and genetic correlation with major depressive disorder, anxiety disorder and schizophrenia.	Mood instability	53,525 European ancestry cases, 60,443 European ancestry controls	NA	9p23	PTPRD	rs10959826-G	0.785	8E-9		0.06	[0.04-0.08] unit increase	Affymetrix [8797848] (imputed)	N
672	chr9	11459409	11459410	rs10959826	29187730	Ward J	2017-11-30	Transl Psychiatry	Genome-wide analysis in UK Biobank identifies four loci associated with mood instability and genetic correlation with major depressive disorder, anxiety disorder and schizophrenia.	Mood instability	43,660 European ancestry cases without a psychiatric disorder diagnosis, 60,443 European ancestry controls	NA	9p23	PTPRD	rs10959826-G	0.789	5E-7		0.055	[0.035-0.075] unit increase	Affymetrix [8797848] (imputed)	N
672	chr9	11477573	11477574	rs12343816	34512620	Matzaraki V	2021-08-26	Front Immunol	Inflammatory Protein Profiles in Plasma of Candidaemia Patients and the Contribution of Host Genetics to Their Variability.	Candida albicans stimulated CCL3 levels	378 European ancestry individuals	NA	9p23		rs12343816-?	NR	6E-9		5.81	z-score increase	Illumina [NR] (imputed)	N
672	chr9	11513018	11513019	rs1982277	30718901	Howard DM	2019-02-04	Nat Neurosci	Genome-wide meta-analysis of depression identifies 102 independent variants and highlights the importance of the prefrontal brain regions.	Depression	118,811 European ancestry cases, 327,427 European ancestry controls, 127,552 cases, 233,763 controls	414,055 European ancestry cases, 892,299 European ancestry controls	9p23	NR	rs1982277-T	0.7594	1E-15		1.021	[1.016-1.026]	NR [8098588] (imputed)	N
672	chr9	11513616	11513617	rs17189482	31748690	Purves KL	2019-11-20	Mol Psychiatry	A major role for common genetic variation in anxiety disorders.	Anxiety symptoms	19,012 European ancestry cases, 58,113 European ancestry controls	NA	9p23	NR	rs17189482-G	0.09	4E-9		0.04	[NR] unit decrease	Illumina [NR] (imputed)	N
672	chr9	11519983	11519984	rs10959883	31748690	Purves KL	2019-11-20	Mol Psychiatry	A major role for common genetic variation in anxiety disorders.	Lifetime anxiety disorder	25,453 European ancestry cases, 58,113 European ancestry controls	6,524 cases, 24001 controls	9p23	NR	rs10959883-C	0.09	3E-11	(EA)	0.15	[NR] unit decrease	Illumina [NR] (imputed)	N
673	chr9	11544963	11544964	rs10959913	29700475	Wray NR	2018-04-26	Nat Genet	Genome-wide association analyses identify 44 risk variants and refine the genetic architecture of major depression.	Depression	135,458 European ancestry cases, 344,901 European ancestry controls	NA	9p23	intergenic	rs10959913-T	0.76	5E-9		1.03	[1.02-1.04]	NR [9622763] (imputed)	N
673	chr9	11553380	11553381	rs10959925	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Anxiety	at least 23,606 European ancestry cases, at least 113,351 European ancestry controls	624,615 European ancestry cases, 1,310,854 European ancestry controls	9p23	RP11, 23D5.1	rs10959925-G	0.2107	1E-13		0.02077454	[0.014-0.027] unit increase	NR [9417325] (imputed)	N
673	chr9	11553381	11553382	rs10959926	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	9p23	NR	rs10959926-C	0.2175	6E-8		0.0078	[0.0051-0.0105] unit decrease	NR [7666894] (imputed)	N
673	chr9	11557796	11557797	rs10809520	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Neuroticism (MTAG)	168,105 European ancestry individuals	NA	9p23	NR	rs10809520-T	0.283	2E-11		0.0207	[0.015-0.027] unit decrease	Illumina [NR] (imputed)	N
673	chr9	11557796	11557797	rs10809520	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms (MTAG)	354,862 European ancestry individuals	NA	9p23	NR	rs10809520-T	0.2846	2E-11		0.0158	[0.011-0.021] unit decrease	Illumina [NR] (imputed)	N
673	chr9	11557796	11557797	rs10809520	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms	354,862 European ancestry individuals	NA	9p23	NR	rs10809520-T	0.2846	5E-10		0.0164	[0.011-0.021] unit decrease	Illumina [NR] (imputed)	N
673	chr9	11557796	11557797	rs10809520	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Depression	105,739 European ancestry individuals, 16,471 European ancestry major depressive disorder cases, 58,835 European ancestry controls	368,890 European ancestry individuals	9p23	NR	rs10809520-T	NR	6E-9		5.8197784	[NR] z score decrease	Affymetrix [up to 6544862] (imputed)	N
673	chr9	11610676	11610677	rs62551581	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	9p23	NR	rs62551581-C	NR	2E-8		0.01613	[0.01-0.022] unit decrease	Affymetrix [10847151] (imputed)	N
673	chr9	11610895	11610896	rs62551583	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling worry	372,869 European ancestry individuals	NA	9p23	NR	rs62551583-A	0.218286	4E-8		5.475	unit increase	NR [10847151] (imputed)	N
673	chr9	11612921	11612922	rs62551586	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	9p23	NR	rs62551586-A	NR	1E-9		6.058	z score decrease	Affymetrix [10847151] (imputed)	N
673	chr9	11618413	11618414	rs34640360	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	9p23	NR	rs34640360-?	NR	8E-12				Affymetrix [~ 8270000] (imputed)	N
673	chr9	11619763	11619764	rs12336441	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	9p23	NA	rs12336441-A	0.6177	5E-13		0.0126	[0.0093-0.0159] unit increase	NR [~ 27400000] (imputed)	N
673	chr9	11635409	11635410	rs79418323	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	9p23	NR	rs79418323-?	NR	9E-9				Illumina [7760689] (imputed)	N
673	chr9	11641242	11641243	rs12339966	26969751	Parmar PG	2016-03-11	Circ Cardiovasc Genet	International Genome-Wide Association Study Consortium Identifies Novel Loci Associated With Blood Pressure in Children and Adolescents.	Systolic blood pressure	5,008 European ancestry prepubescent females, 5,082 European ancestry prepubescent males, 4,238 European ancestry pubescent females, 4,185 European ancestry pubescent males, 2,680 European ancestry post-pubescent females, 2,496 European ancestry post-pubescent males	NA	9p23	intergenic	rs12339966-?	NR	1E-7	(Male, Pre-puberty)	0.134	[0.085-0.184] unit increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
673	chr9	11645182	11645183	rs62551639	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	9p23	NR	rs62551639-C	0.0622380068375607	1E-10		0.016612465	[0.012-0.022] unit decrease	NR [NR]	N
673	chr9	11648566	11648567	rs368229285	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Large artery stroke	350 Indian ancestry cases, 2,154 Indian ancestry controls	NA	9p23		rs368229285-?	NR	4E-6		1.1564175	[1.08704741566735-1.23021453962512]	Illumina [up to 7827597] (imputed)	N
673	chr9	11651143	11651144	rs10960067	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	9p23	NR	rs10960067-G	0.221366612926284	1E-19		0.017473698	[0.014-0.021] unit decrease	NR [NR]	N
673	chr9	11651143	11651144	rs10960067	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	9p23	NR	rs10960067-G	0.221366612926284	2E-19		0.0111565385	[0.0087-0.0136] unit decrease	NR [NR]	N
673	chr9	11651143	11651144	rs10960067	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	9p23	intergenic	rs10960067-A	0.78417	2E-16		8.24	z score increase	Illumina [18485882] (imputed)	N
673	chr9	11664362	11664363	rs2821158	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	9p23	Intergenic	rs2821158-?	NR	9E-7		2.584	[NR]	Affymetrix [492217] (imputed)	N
674	chr9	11695223	11695224	rs62553458	32959083	Adewuyi EO	2020-09-21	Hum Genet	Genetic analysis of endometriosis and depression identifies shared loci and implicates causal links with gastric mucosa abnormality.	Endometriosis or depression (pleiotropy)	17,054 endometriosis cases, 170,756 European ancestry depression cases, 191,858 controls, 329,443 European ancestry controls	NA	9p23	NR	rs62553458-A		9E-9		0.0499565	[0.033-0.067] unit decrease	NR [6694342]	N
674	chr9	11695223	11695224	rs62553458	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	9p23	NR	rs62553458-A	0.0601198832936311	5E-11		0.015851295	[0.011-0.021] unit decrease	NR [NR]	N
674	chr9	11699269	11699270	rs10960103	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on highest math class (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	9p23		rs10960103-?	NR	3E-15				NR [NR]	N
674	chr9	11699269	11699270	rs10960103	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on educational attainment (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	9p23		rs10960103-?	NR	4E-14				NR [NR]	N
674	chr9	11699269	11699270	rs10960103	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on cognitive performance (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	9p23		rs10960103-?	NR	2E-15				NR [NR]	N
674	chr9	11699269	11699270	rs10960103	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on average household income before tax (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	9p23		rs10960103-?	NR	4E-13				NR [NR]	N
674	chr9	11699269	11699270	rs10960103	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on Townsend deprivation index (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	9p23		rs10960103-?	NR	2E-15				NR [NR]	N
674	chr9	11699269	11699270	rs10960103	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	9p23	NR	rs10960103-G	0.2273	5E-8		0.0076	[0.0049-0.0103] unit decrease	NR [7666894] (imputed)	N
674	chr9	11699269	11699270	rs10960103	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	9p23	NR	rs10960103-G	0.21773	3E-13		0.040364	[0.03-0.051] unit decrease	Illumina [18485882] (imputed)	N
674	chr9	11699269	11699270	rs10960103	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Neuroticism	170,911 European ancestry individuals	NA	9p23	TYRP1	rs10960103-C	0.774	2E-10		0.026403464	[0.018-0.035] unit increase	Affymetrix [up to 6544775] (imputed)	N
674	chr9	11701595	11701596	rs10809558	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	9p23	NR	rs10809558-?	NR	1E-8				Affymetrix [NR]	N
674	chr9	11703891	11703892	rs56318386	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	9p23	NR	rs56318386-T	0.215156	1E-10		6.43	z score decrease	NR [10847151] (imputed)	N
674	chr9	11703891	11703892	rs56318386	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Experiencing mood swings	373,733 European ancestry individuals	NA	9p23	NR	rs56318386-T	0.215156	1E-9		6.06	z score decrease	NR [10847151] (imputed)	N
674	chr9	11706770	11706771	rs1279094	27927641	Ombrello MJ	2016-12-07	Ann Rheum Dis	Genetic architecture distinguishes systemic juvenile idiopathic arthritis from other forms of juvenile idiopathic arthritis: clinical and therapeutic implications.	Systemic juvenile idiopathic arthritis	178 European ancestry cases, 434 European ancestry controls, 81 Hispanic/Latin American cases, 177 Hispanic/Latin American controls, 511 cases, 6,336 controls	NA	9p23	LOC101929446	rs1279094-?		1E-6	(Additive)	1.3	[1.20-1.50]	Illumina [5600610] (imputed)	N
674	chr9	11727895	11727896	rs62555664	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	9p23	NR	rs62555664-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
674	chr9	11753694	11753695	rs10960174	31005965	Coltell O	2019-04-21	Am J Clin Nutr	Association between taste perception and adiposity in overweight or obese older subjects with metabolic syndrome and identification of novel taste-related genes.	Bitter taste perception (phenylthiocarbamide) in obesity with metabolic syndrome	372 individuals	NA	9p23	intergenic	rs10960174-A	0.316	7E-6		0.477	[0.27-0.68] unit increase	Illumina [622468]	N
674	chr9	11786601	11786602	rs1565001	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	9p23	intergenic	rs1565001-C	0.21321999999999997	2E-13		7.329	z score decrease	Illumina [18485882] (imputed)	N
675	chr9	11812812	11812813	rs147338646	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	9p23	Intergenic	rs147338646-A	NR	5E-7	(within families)	5.009	unit increase	Affymetrix [up to 15107142] (imputed)	N
675	chr9	11813798	11813799	rs12375985	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	9p23		rs12375985-?	NR	2E-13				NR [~ 8900000] (imputed)	N
675	chr9	11814069	11814070	rs10756292	34356046	Oluwafemi OO	2021-07-01	Genes (Basel)	Genome-Wide Association Studies of Conotruncal Heart Defects with Normally Related Great Vessels in the United States.	Conotruncal heart defects with normally related great vessels (without 22q.11.2 deletion syndrome)	294 European ancestry cases, 2,976 European ancestry controls, 641 trios	NA	9p23		rs10756292-?	NR	3E-6				Illumina [3311160] (imputed)	N
675	chr9	11819685	11819686	rs10960276	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		9p23	TYRP1	rs10960276-C	0.644607	2E-8		0.00809436	[0.0053-0.0109] unit increase	Affymetrix [12370749]	N
675	chr9	11839804	11839805	rs10960303	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	9p23		rs10960303-?	NR	8E-15				NR [~ 8900000] (imputed)	N
675	chr9	11846537	11846541	rs201433058	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	9p23		rs201433058-T	NR	4E-8		0.0133	[0.0086-0.018] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
675	chr9	11847174	11847175	rs1486826	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	9p23	NR	rs1486826-?	NR	1E-11				Affymetrix [~ 8270000] (imputed)	N
675	chr9	11863916	11863917	rs72706173	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Neuroticism	170,911 European ancestry individuals	NA	9p23	NR	rs72706173-A	0.943	5E-6		0.03468407	[0.02-0.05] unit increase	Affymetrix [up to 6544775] (imputed)	N
675	chr9	11883298	11883299	rs10809637	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	9p23	NR	rs10809637-T	NR	5E-8		5.457	z score increase	Affymetrix [10847151] (imputed)	N
675	chr9	11890044	11890045	rs4401971	24821223	Mattheisen M	2014-05-13	Mol Psychiatry	Genome-wide association study in obsessive-compulsive disorder: results from the OCGAS.	Obsessive-compulsive disorder	1,406 cases and 1,489 controls from 1,065 families, 192 cases, 1,984 controls	NA	9p23	PTPRD, LOC646114, LOC100049717	rs4401971-?	NR	4E-7				Illumina [549123]	N
676	chr9	11930363	11930364	rs35419961	25625606	Mather KA	2015-01-27	PLoS One	Investigating the genetics of hippocampal volume in older adults without dementia.	Hippocampal volume	498 European ancestry older adult individuals	NA	9p23	intergenic	rs35419961-A		2E-6		366.98	[215.04-518.92] unit decrease	Affymetrix, Illumina [at least 646791] (imputed)	N
676	chr9	11951221	11951222	rs1929412	24529757	Xie T	2014-01-17	Neurobiol Aging	Genome-wide association study combining pathway analysis for typical sporadic amyotrophic lateral sclerosis in Chinese Han populations.	Amyotrophic lateral sclerosis (sporadic)	250 Han Chinese ancestry cases, 250 Han Chinese ancestry controls	NA	9p23	TYRP1	rs1929412-?		8E-6				Illumina [859311]	N
676	chr9	11964871	11964872	rs12001137	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Inflammatory skin disease	2,079 European ancestry atopic dermatitis cases, 4,212 European ancestry psoriasis cases, 11,899 European ancestry controls	NA	9p23	RP11-74C3.1	rs12001137-?	NR	2E-6	(Shared)			Affymetrix, Illumina [~ 5200000]	N
677	chr9	12079332	12079333	rs4741206	29356057	Du Z	2018-01-21	Prostate	Genetic risk of prostate cancer in Ugandan men.	Prostate cancer	560 Ugandan ancestry cases, 480 Ugandan ancestry controls	NA	9p23	NR	rs4741206-G	0.78	9E-6		1.78	[1.38-2.30]	Illumina [17125421] (imputed)	N
677	chr9	12080759	12080760	rs74928198	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Ischemic stroke (cardioembolic)	174 Indian ancestry cases, 2,154 Indian ancestry controls	NA	9p23		rs74928198-?	NR	1E-6		1.1919801	[1.10976605732383-1.2802847700632]	Illumina [up to 7827597] (imputed)	N
677	chr9	12108915	12108916	rs12351590	23738518	Luciano M	2013-06-05	Genes Brain Behav	A genome-wide association study for reading and language abilities in two population cohorts.	Word reading	6,649 European ancestry children and adolescents		9p23	intergenic	rs12351590-?	NR	5E-6				Illumina [~ 2400000] (imputed)	N
677	chr9	12108915	12108916	rs12351590	23738518	Luciano M	2013-06-05	Genes Brain Behav	A genome-wide association study for reading and language abilities in two population cohorts.	Reading and spelling	6,649 European ancestry children and adolescents	NA	9p23	intergenic	rs12351590-?	NR	3E-6				Illumina [~ 2400000] (imputed)	N
677	chr9	12141348	12141349	rs186208070	31178898	Lin BM	2019-05-24	Front Genet	Genetics of Chronic Kidney Disease Stages Across Ancestries: The PAGE Study.	Mild to moderate chronic kidney disease	1,532 African American cases, 1,336 Hispanic cases, 575 East Asian cases, 608 Native Hawaiian cases, 42 American Indian cases, 57 cases, 13,761 African American controls, 19,317 Hispanic controls, 3,540 East Asian controls, 2,892 Native Hawaiian controls, 595 American Indian controls, 936 controls	NA	9p23	TYRP1	rs186208070-A	0.009	7E-8		2.07	[1.59-2.70]	Illumina [1438399] (imputed)	N
677	chr9	12165297	12165298	rs7024392	28468790	Agopian AJ	2017-06-01	Circ Cardiovasc Genet	Genome-Wide Association Studies and Meta-Analyses for Congenital Heart Defects.	Conotruncal heart defects (maternal effects)	up to 838 European ancestry trios	NA	9p23	intergenic	rs7024392-?	NR	1E-6		2.014347	[1.521009-2.667698]	Illumina [at least 4756722] (imputed)	N
677	chr9	12184023	12184024	rs73408421	29356057	Du Z	2018-01-21	Prostate	Genetic risk of prostate cancer in Ugandan men.	Prostate cancer	560 Ugandan ancestry cases, 480 Ugandan ancestry controls	NA	9p23	NR	rs73408421-A	0.76	1E-6		1.81	[1.42-2.30]	Illumina [17125421] (imputed)	N
678	chr9	12214208	12214209	rs55823149	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Ischemic stroke (cardioembolic)	174 Indian ancestry cases, 2,154 Indian ancestry controls	NA	9p23		rs55823149-?	NR	4E-6		1.1756873	[1.09740032465284-1.2595591021229]	Illumina [up to 7827597] (imputed)	N
678	chr9	12233220	12233221	rs71507307	34854908	Veluchamy A	2021-12-01	JAMA Netw Open	Association of Genetic Variant at Chromosome 12q23.1 With Neuropathic Pain Susceptibility.	Neuropathic pain	4,512 European ancestry cases, 428,489 European ancestry controls	NA	9p23		rs71507307-G	0.964	8E-6		1.206	[1.113-1.307]	Affymetrix, Illumina [NR] (imputed)	N
678	chr9	12260407	12260408	rs10960551	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,963 Sub-Saharan African ancestry females	NA	9p23		rs10960551-C	0.716212	1E-7		0.015121	[0.0095-0.0207] unit increase	Illumina [13900000] (imputed)	N
678	chr9	12262288	12262289	rs1984212	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,963 Sub-Saharan African ancestry females	NA	9p23		rs1984212-G	0.691528	1E-6		0.0135328	[0.0081-0.019] unit increase	Illumina [13900000] (imputed)	N
678	chr9	12275923	12275924	rs10960561	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Longevity	up to 482,000 European ancestry individuals	NA	9p23	NR	rs10960561-A	NR	9E-6		0.01238	[0.0069-0.0178] unit decrease	Illumina [~ 540852]	N
678	chr9	12276138	12276139	rs56266604	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs non-severe)	86 Finnish ancestry male severe erosion cases, 50 Finnish ancestry female severe erosion cases, 817 Finnish ancestry male non-severe erosion controls, 991 Finnish ancestry female non-severe erosion controls	NA	9p23	NR	rs56266604-?	NR	4E-6				Illumina [NR] (imputed)	N
678	chr9	12289526	12289527	rs7020196	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		9p23	TYRP1	rs7020196-C	0.419679	4E-8		0.00778854	[0.005-0.0106] unit increase	Affymetrix [12370749]	N
679	chr9	12327031	12327032	rs112306995	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Spatial processing	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	9p23	intergenic	rs112306995-T	NR	3E-6		0.25859162	[0.15-0.37] unit decrease	Illumina [> 6200000] (imputed)	N
679	chr9	12396730	12396731	rs13289810	22556244	Kenny EE	2012-05-04	Science	Melanesian blond hair is caused by an amino acid change in TYRP1.	Hair color	43 Solomon Islander ancestry blond haired individuals, 42 Solomon Islander ancestry dark haired individuals	NA	9p23	TYRP1	rs13289810-?	0.31	1E-19				Illumina [589241]	N
680	chr9	12483940	12483941	rs10960680	30921485	Bejaoui Y	2019-03-28	Exp Dermatol	Genome-wide association study of psoriasis in an Egyptian population.	Psoriasis	215 Egyptian ancestry cases, 416 Egyptian ancestry controls	321 Egyptian ancestry cases, 253 Egyptian ancestry controls	9p23	TYRP1	rs10960680-?	NR	5E-7		1.5	[1.19-1.89]	Illumina [312245]	N
680	chr9	12484044	12484044	rs58654493	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 23)	2,187 European ancestry individuals	NA	9p23	NR	rs58654493-TA	0.3408	3E-6		0.1519	[0.089-0.215] unit increase	Illumina [10677593] (imputed)	N
680	chr9	12500315	12500316	rs117538772	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9p23	NR	rs117538772-A	0.01568	7E-9	(RAB7A)	0.05332	NR unit increase	Illumina [1671387] (imputed)	N
680	chr9	12521825	12521826	rs16929097	23829686	Ding L	2013-07-05	Hum Genomics	Rank-based genome-wide analysis reveals the association of ryanodine receptor-2 gene variants with childhood asthma among human populations.	Asthma (childhood onset)	429 European ancestry affected offspring trios	52 African American affected offspring trios, 46 Hispanic affected offspring trios	9p23	intergenic	rs16929097-?	NR	8E-9				Affymetrix [786195]	N
680	chr9	12582564	12582565	rs1325154	18937294	Lasky-Su J	2008-12-05	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association scan of the time to onset of attention deficit hyperactivity disorder.	Attention deficit hyperactivity disorder (time to onset)	930 European ancestry trios	NA	9p23	intergenic	rs1325154-C	NR	5E-6	(later onset)			Perlegen [429981]	N
681	chr9	12587152	12587153	rs10960710	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous malignant melanoma	36,760 European ancestry cases, 375,188 European ancestry controls	NA	9p23	TYRP1	rs10960710-T	0.606699	3E-12		1.0727311	NR	Affymetrix, Illumina [NR] (imputed)	N
681	chr9	12589067	12589068	rs6474717	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	9p23	NA	rs6474717-G		4E-9		0.0111587	[0.0074-0.0149] unit decrease	Illumina [13288253] (imputed)	N
681	chr9	12599560	12599561	rs13283146	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Nevus count or cutaneous melanoma	36,760 European ancestry cutaneous melanoma cases, 375,188 European ancestry controls, 12,930 European ancestry individuals, 52,847 individuals	NA	9p23	TYRP1	rs13283146-C	0.368047	3E-10				Affymetrix, Illumina [NR] (imputed)	N
681	chr9	12619615	12619616	rs1325118	32041948	Sarin KY	2020-02-10	Nat Commun	Genome-wide meta-analysis identifies eight new susceptibility loci for cutaneous squamous cell carcinoma.	Cutaneous squamous cell carcinoma	19,149 European ancestry cases, 680,049 European ancestry controls	NA	9p23	TYRP1	rs1325118-C	0.304	4E-8		0.07	[0.05-0.09] unit decrease	NR [13607369] (imputed)	N
681	chr9	12667263	12667264	rs149379766	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9p23	NR	rs149379766-A	0.0122	4E-9	(TTN)	1.225	NR unit increase	Illumina [1671387] (imputed)	N
681	chr9	12672096	12672097	rs1408799	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Eye color traits	4,988 Spanish ancestry individuals	NA	9p23	TYRP1	rs1408799-?		2E-9	(Eye color)	0.1366	[0.092-0.181] unit decrease	Illumina [9499600] (imputed)	N
681	chr9	12672096	12672097	rs1408799	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Eye color traits	4,988 Spanish ancestry individuals	NA	9p23	RNU2-47P, TYRP1	rs1408799-?		2E-10	(Eye color phototype score)	0.4536	[0.31-0.59] unit increase	Illumina [9499600] (imputed)	N
681	chr9	12672096	12672097	rs1408799	23548203	Zhang M	2013-04-01	Hum Mol Genet	Genome-wide association studies identify several new loci associated with pigmentation traits and skin cancer risk in European Americans.	Eye color	3871 European ancestry individuals	2,496 European ancestry individuals	9p23	TYRP1	rs1408799-C	NR	5E-7	(Blue eye color)	0.27	[0.17-0.37] unit decrease	Affymetrix, Illumina [2469762] (imputed)	N
681	chr9	12672096	12672097	rs1408799	18488028	Sulem P	2008-05-18	Nat Genet	Two newly identified genetic determinants of pigmentation in Europeans.	Blue vs. green eyes	5,130 Icelandic individuals	3,330 European ancestry individuals	9p23	TYRP1	rs1408799-C	0.75	6E-17		1.4	[1.25-1.57]	Illumina [316515]	N
681	chr9	12677470	12677471	rs13297008	33692100	Simcoe M	2021-03-10	Sci Adv	Genome-wide association study in almost 195,000 individuals identifies 50 previously unidentified genetic loci for eye color.	Eye color	157,485 European ancestry individuals	35,501 European ancestry individuals, 959 Han Chinese ancestry individuals, 677 Indian ancestry individuals	9p23		rs13297008-G	0.388	5E-250	(EA)	0.26	[0.24-0.28] unit increase	Illumina [11532091] (imputed)	N
681	chr9	12679243	12679244	rs62538956	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	9p23	TYRP1	rs62538956-?		1E-11				Affymetrix, Illumina [NR] (imputed)	N
681	chr9	12682662	12682663	rs10809826	30664655	Adhikari K	2019-01-21	Nat Commun	A GWAS in Latin Americans highlights the convergent evolution of lighter skin pigmentation in Eurasia.	Eye color (saturation)	6,236 Latin American individuals	NA	9p23	TYRP1	rs10809826-?	NR	2E-8				Illumina [8896142] (imputed)	N
681	chr9	12682662	12682663	rs10809826	30664655	Adhikari K	2019-01-21	Nat Commun	A GWAS in Latin Americans highlights the convergent evolution of lighter skin pigmentation in Eurasia.	Eye color (brightness)	6,236 Latin American individuals	NA	9p23	TYRP1	rs10809826-?	NR	5E-16				Illumina [8896142] (imputed)	N
681	chr9	12682662	12682663	rs10809826	30664655	Adhikari K	2019-01-21	Nat Commun	A GWAS in Latin Americans highlights the convergent evolution of lighter skin pigmentation in Eurasia.	Eye color	6,236 Latin American individuals	NA	9p23	TYRP1	rs10809826-?	NR	1E-10				Illumina [8896142] (imputed)	N
681	chr9	12696498	12696499	rs2762461	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous melanoma or hair colour	36,760 European ancestry cutaneous melanoma cases, 375,188 European ancestry controls, 352,662 European ancestry individuals	NA	9p23	TYRP1	rs2762461-G	0.446104	8E-125				Affymetrix, Illumina [NR] (imputed)	N
681	chr9	12712156	12712157	rs1137134	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	9p23		rs1137134-?	NR	6E-141				NR [~ 8900000] (imputed)	N
681	chr9	12712577	12712578	rs13288130	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	9p23	TYRP1	rs13288130-?	NR	1E-77		1.1613053	NR	Affymetrix [9154080] (imputed)	N
682	chr9	12716761	12716762	rs1326797	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Low tan response	46,768 European ancestry low tanning cases, 74,528 European ancestry moderate and high tanning controls	15,547 European ancestry low tanning  cases, 39,835 European moderate and high tanning ancestry controls	9p23	TYRP1	rs1326797-T	NR	1E-17		0.076	[0.025-0.127] unit decrease	Affymetrix [8351141] (imputed)	N
682	chr9	12730118	12730119	rs10960765	29662168	Hysi PG	2018-04-16	Nat Genet	Genome-wide association meta-analysis of individuals of European ancestry identifies new loci explaining a substantial fraction of hair color variation and heritability.	Hair color	290,891 European ancestry individuals	27,865 European ancestry individuals	9p23	TYRP1	rs10960765-T	0.392	5E-67		0.047	[0.041-0.053] unit increase	Affymetrix, Illumina [at least 560000] (imputed)	N
682	chr9	12732574	12732575	rs7034354	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Sunburns	approximately 344,000 European ancestry individuals	NA	9p23		rs7034354-?	NR	4E-11				NR [~ 8900000] (imputed)	N
682	chr9	12785072	12785073	rs7042370	26301688	Li YR	2015-08-24	Nat Med	Meta-analysis of shared genetic architecture across ten pediatric autoimmune diseases.	Pediatric autoimmune diseases	97 European ancestry thyroiditis cases, 107 European ancestry ankylosing spondylitis cases, 100 European ancestry psoriasis cases, 173 European ancestry celiac disease cases, 254 European ancestry systemic lupus erythematosus cases, 308 European ancestry common variable inmunodeficiency cases, 865 European ancestry ulcerative colitis cases, 1,086 European ancestry Type 1 diabetes cases, 1,123  European ancestry juvenile idiopathic arthritis cases, 1,922  European ancestry Crohn's disease cases, 10,718 European ancestry controls	NA	9p23	LURAP1L	rs7042370-T	0.43	1E-7				Illumina [7347414] (imputed)	N
682	chr9	12802822	12802823	rs114241027	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	9p23	C9orf150	rs114241027-C	0.995	4E-6	(AA)	0.87	NR unit increase	Illumina [NR] (imputed)	N
682	chr9	12805029	12805030	rs114771314	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	9p23	C9orf150	rs114771314-T	0.995	4E-6	(AA)	0.86	NR unit increase	Illumina [NR] (imputed)	N
683	chr9	12857309	12857310	rs508803	29559693	Zengini E	2018-03-20	Nat Genet	Genome-wide analyses using UK Biobank data provide insights into the genetic architecture of osteoarthritis.	Osteoarthritis (self-reported)	12,658 European ancestry cases, 50,898 European ancestry controls		9p23	NR	rs508803-A	0.472564	9E-6		1.0653132	[1.1-1.07]	Affymetrix [16499239] (imputed)	N
683	chr9	12865679	12865680	rs142620543	34162658	Quinn MC	2021-06-23	Cancer Epidemiol Biomarkers Prev	Identification of a locus near ULK1 associated with progression-free survival in ovarian cancer.	Progression free survival in serous epithelial ovarian cancer treated with carboplatin and paclitaxel	1,751 European ancestry individuals	NA	9p23	NR	rs142620543-A		8E-6		0.7137	[0.4-1.03] unit increase	Illumina [12759548] (imputed)	N
683	chr9	12908129	12908130	rs10756423	34387878	Kim KY	2021-08-13	Hepatology	Genome-wide association of individual vulnerability with alcoholic liver disease: A Korean Genome and Epidemiology Study.	Alcohol-associated liver disease in light drinkers	1,379 Korean ancestry cases, 13,132 Korean ancestry controls	NA	9p23		rs10756423-?	NR	7E-6		1.201	[1.108-1.301]	Affymetrix [7975321] (imputed)	N
683	chr9	12914395	12914396	rs1953021	24024966	Teumer A	2013-08-14	J Clin Periodontol	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (CDC/AAP)	up to 3,915 European ancestry individuals	NA	9p23	C9orf150	rs1953021-T	0.71	1E-6	(Age 20-81 years)	1.35	[1.20-1.53]	Affymetrix, Illumina [up to 17585496] (imputed)	N
684	chr9	13007128	13007129	rs1360517	19754311	Le Clerc S	2009-09-15	J Infect Dis	Genomewide association study of a rapid progression cohort identifies new susceptibility alleles for AIDS (ANRS Genomewide Association Study 03).	AIDS	85 European ancestry cases, 2,049 European ancestry controls	NA	9p23	intergenic	rs1360517-A	0.06	3E-6		3.09	[2.00-4.78]	Illumina [291119]	N
684	chr9	13038554	13038555	rs7024590	29855589	Chernus J	2018-05-31	Sci Rep	GWAS reveals loci associated with velopharyngeal dysfunction.	Velopharyngeal dysfunction	54 Hispanic or Latin American and unknown ancestry cases, 922 Hispanic or Latin American and unknown ancestry controls	NA	9p23	NR	rs7024590-?	NR	5E-6		0.11613226	[NR] unit decrease	Illumina [at least 269494] (imputed)	N
684	chr9	13049378	13049379	rs10960914	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9p23		rs10960914-?	NR	8E-9				NR [~ 8900000] (imputed)	N
684	chr9	13097570	13097571	rs62532649	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	9p23	NR	rs62532649-T	0.0608929	2E-11		0.095662	[0.068-0.123] unit decrease	Affymetrix [17914406] (imputed)	N
685	chr9	13226944	13226945	rs12340775	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	9p23	NR	rs12340775-A	0.0556306	1E-10		0.0975927	[0.068-0.127] unit decrease	Affymetrix [17914406] (imputed)	N
685	chr9	13226944	13226945	rs12340775	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	9p23	MPDZ	rs12340775-G	0.950058	3E-25		0.0431446	[0.035-0.051] unit increase	NR [13737936] (imputed)	N
685	chr9	13226944	13226945	rs12340775	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	9p23		rs12340775-?	NR	1E-22				NR [~ 8900000] (imputed)	N
685	chr9	13226944	13226945	rs12340775	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	9p23		rs12340775-?	NR	3E-14				NR [~ 8900000] (imputed)	N
685	chr9	13226944	13226945	rs12340775	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	9p23	NR	rs12340775-A	0.0499475	2E-21		0.0680958	[0.054-0.082] unit increase	NR [19129689] (imputed)	N
685	chr9	13226944	13226945	rs12340775	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	9p23	NR	rs12340775-A	0.0576	5E-6		0.0186	[0.011-0.027] unit decrease	NR [~ 27400000] (imputed)	N
685	chr9	13226944	13226945	rs12340775	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	9p23		rs12340775-?	NR	2E-19		0.042545	[0.033-0.052] unit increase	Affymetrix [20259828] (imputed)	N
685	chr9	13226944	13226945	rs12340775	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	9p23	MPDZ	rs12340775-G	0.942518	4E-10		0.049206	[0.034-0.064] unit increase	NR [17166351] (imputed)	N
685	chr9	13226944	13226945	rs12340775	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	9p23	MPDZ	rs12340775-G	0.941934	9E-6	(men)	0.0536275	[0.031-0.076] unit increase	NR [17166351] (imputed)	N
685	chr9	13231633	13231634	rs1330129	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	9p23		rs1330129-T	0.43	3E-12		6.96	z score increase	Affymetrix [9061022] (imputed)	N
685	chr9	13237185	13237186	rs141720143	30306274	Shah RL	2018-10-10	Hum Genet	Genome-wide association studies for corneal and refractive astigmatism in UK Biobank demonstrate a shared role for myopia susceptibility loci.	Refractive astigmatism	88,005 European ancestry individuals		9p23	MPDZ	rs141720143-A	0.987	2E-6		0.06	[0.035-0.085] dioptres decrease	NR [5900115] (imputed)	N
686	chr9	13246518	13246519	rs17273898	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	9p23	C9orf150	rs17273898-?	NR	9E-6	(TAG 58:10)	0.16017812	[0.089-0.231] unit decrease	Affymetrix [at least 2500000] (imputed)	N
686	chr9	13257030	13257031	rs56009005	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	9p23	MPDZ	rs56009005-A	0.0727	7E-11		0.0243	[0.017-0.032] unit decrease	Affymetrix [18391927] (imputed)	N
686	chr9	13290216	13290217	rs118021381	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9p23	NR	rs118021381-A	0.0122	2E-8	(HSPH1)	0.07197	NR unit increase	Illumina [1671387] (imputed)	N
686	chr9	13322385	13322386	rs147439077	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9p23	NR	rs147439077-T	0.01045	2E-8	(HSPH1)	0.07678	NR unit increase	Illumina [1671387] (imputed)	N
686	chr9	13322385	13322386	rs147439077	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9p23	NR	rs147439077-T	0.01045	1E-12	(S100A8)	0.3096	NR unit increase	Illumina [1671387] (imputed)	N
687	chr9	13437449	13437450	rs190716777	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	GCA-900066495 sp900066495 abundance in stool	5,959 Finnish ancestry individuals	NA	9p23		rs190716777-T	0.0120838	2E-8		0.232558	[0.15-0.31] unit increase	Illumina [7980478] (imputed)	N
687	chr9	13437449	13437450	rs190716777	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	GCA-900066495 abundance in stool	5,959 Finnish ancestry individuals	NA	9p23		rs190716777-T	0.0120838	2E-8		0.265347	[0.17-0.36] unit increase	Illumina [7980478] (imputed)	N
687	chr9	13475445	13475446	rs150066336	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	9p23	NR	rs150066336-?	NR	2E-7		0.6169	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
687	chr9	13477967	13477968	rs10961078	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs10961078-T	0.280853	5E-8		0.0525474	[0.033-0.073] decrease	Affymetrix [11014269] (imputed)	N
688	chr9	13522924	13522925	rs10961107	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	9p23	Intergenic	rs10961107-T	NR	4E-6		0.0553104	[0.032-0.079] unit decrease	Illumina [13520550] (imputed)	N
688	chr9	13549154	13549155	rs1324175	33649486	Hardcastle AJ	2021-03-01	Commun Biol	A multi-ethnic genome-wide association study implicates collagen matrix integrity and cell differentiation pathways in keratoconus.	Keratoconus	2,116 European ancestry cases, 24,626 European ancestry controls	1, 389 European ancestry cases, 79,727 European ancestry controls, 759 South Asian ancestry cases, 8,009 South Asian ancestry controls, 405 African ancestry cases, 4,185 African ancestry controls	9p23	intergenic	rs1324175-T	NR	3E-19		0.244	[0.19-0.3] unit decrease	Affymetrix [7701190] (imputed)	N
688	chr9	13555911	13555912	rs11999938	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	9p23	FLJ41200, LINC00583	rs11999938-G	0.8171	7E-17		0.1477	[0.11-0.18] unit increase	Affymetrix [~ 11900000] (imputed)	N
688	chr9	13557490	13557491	rs1324183	23291589	Lu Y	2013-01-06	Nat Genet	Genome-wide association analyses identify multiple loci associated with central corneal thickness and keratoconus.	Corneal structure	13,057 European ancestry individuals, 2,538 Indian ancestry individuals, 2,542 Malay ancestry individuals, 1,883 Chinese ancestry individuals	NA	9p23	NF1B, MPDZ	rs1324183-A	0.2	8E-9		0.05	[0.011-0.089] unit decrease	Affymetrix, Illumina [~ 1000000] (imputed)	N
688	chr9	13558316	13558317	rs1831902	32528159	Choquet H	2020-06-11	Commun Biol	A multiethnic genome-wide analysis of 44,039 individuals identifies 41 new loci associated with central corneal thickness.	Central corneal thickness	32,292 European ancestry individuals, 9,623 East Asian ancestry individuals, 1,367 Hispanic/Latino individuals, 757 African American  individuals	NA	9p23	MPDZ	rs1831902-?	NA	2E-25		3.02	[2.45-3.59] unit decrease	Affymetrix [5541230] (imputed)	N
688	chr9	13558316	13558317	rs1831902	30894546	Ivarsdottir EV	2019-03-20	Nat Commun	Sequence variation at ANAPC1 accounts for 24% of the variability in corneal endothelial cell density.	Corneal hysteresis	6,125 Icelandic ancestry individuals	NA	9p23	LINC01235	rs1831902-?	NR	3E-6		0.13	unit decrease	Illumina [NR]	N
688	chr9	13558316	13558317	rs1831902	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	9p23	FLJ41200, LINC00583	rs1831902-C	0.1926	6E-22		0.166	[0.13-0.2] unit decrease	Affymetrix [~ 11900000] (imputed)	N
688	chr9	13558316	13558317	rs1831902	29235454	Choquet H	2017-12-13	Nat Commun	A large multi-ethnic genome-wide association study identifies novel genetic loci for intraocular pressure.	Intraocular pressure	56,819 European ancestry individuals, 5,748 Hispanic/Latino individuals, 5,119 East Asian ancestry individuals, 2,070 African American individuals	37,930 European and Asian ancestry individuals	9p23	FLJ41200, LINC00583	rs1831902-?	NR	5E-11		0.1	[NR] unit decrease	Affymetrix [at least 665000] (imputed)	N
688	chr9	13558454	13558455	rs12686184	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs12686184-A	0.821348	4E-53		0.180219	[0.16-0.2] increase	Affymetrix [11014269] (imputed)	N
688	chr9	13558910	13558911	rs1333991	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	9p23	NR	rs1333991-T	0.680794	4E-9		0.014328232	[0.0096-0.0191] unit increase	Affymetrix [93095623] (imputed)	N
688	chr9	13558910	13558911	rs1333991	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	9p23	NR	rs1333991-T	0.680798	7E-11		0.01588927	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
688	chr9	13558910	13558911	rs1333991	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	9p23		rs1333991-T	0.680733	2E-9		0.014490047	[0.0097-0.0192] unit increase	Affymetrix [93095623] (imputed)	N
688	chr9	13559716	13559717	rs66720556	30894546	Ivarsdottir EV	2019-03-20	Nat Commun	Sequence variation at ANAPC1 accounts for 24% of the variability in corneal endothelial cell density.	Corneal hysteresis	6,125 Icelandic ancestry individuals	NA	9p23	MPDZ	rs66720556-?	NR	5E-6		0.13	unit decrease	Illumina [NR]	N
688	chr9	13559716	13559717	rs66720556	29760442	Iglesias AI	2018-05-14	Nat Commun	Cross-ancestry genome-wide association analysis of corneal thickness strengthens link between complex and Mendelian eye diseases.	Central corneal thickness	17,803 European ancestry individuals, 8,107 Asian ancestry individuals	NA	9p23	MPDZ	rs66720556-A	0.21	6E-12		2.68	[1.92-3.44] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
688	chr9	13563623	13563624	rs2031316	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	9p23	NR	rs2031316-A	0.08089800000000003	5E-10		0.00960797	[0.0066-0.0126] unit increase	Affymetrix [16582909] (imputed)	N
688	chr9	13563623	13563624	rs2031316	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	9p23	NR	rs2031316-A	0.08089800000000003	2E-6		0.00798889	[0.0046-0.0114] unit increase	Affymetrix [16582965] (imputed)	N
688	chr9	13565221	13565222	rs34944131	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	9p23		rs34944131-T	0.182523	2E-9		0.01737917	[0.012-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
688	chr9	13565221	13565222	rs34944131	32716492	Simcoe MJ	2020-07-27	Hum Mol Genet	Genome-wide association study of corneal biomechanical properties identifies over 200 loci providing insight into the genetic aetiology of ocular diseases.	Corneal hysteresis	106,041 European ancestry individuals	9,029 European ancestry individuals	9p23	MPDZ	rs34944131-G	0.819	4E-86		0.174	[0.16-0.19] unit increase	Affymetrix [12000000] (imputed)	N
688	chr9	13593422	13593423	rs10756488	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	9p23		rs10756488-?	NR	2E-9				NR [~ 8900000] (imputed)	N
689	chr9	13662147	13662148	rs7020018	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	9p23		rs7020018-C	NR	3E-9		0.0118	[0.0079-0.0157] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
689	chr9	13670616	13670617	rs656315	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs656315-T	0.80223	3E-8		0.0599067	[0.038-0.082] increase	Affymetrix [11014269] (imputed)	N
689	chr9	13674060	13674061	rs7876011	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	9p23		rs7876011-G	NR	3E-8		0.0122	[0.0079-0.0165] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
689	chr9	13675370	13675371	rs12237961	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	9p23	NR	rs12237961-T	0.567078	6E-9		0.012948244	[0.0086-0.0173] unit decrease	Affymetrix [93095623] (imputed)	N
689	chr9	13676483	13676484	rs7855395	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	9p23	MPDZ	rs7855395-A	0.428912	7E-9		0.0116745	[0.0077-0.0156] unit increase	Affymetrix [NR] (imputed)	N
689	chr9	13676532	13676533	rs10961195	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	9p23		rs10961195-?	NR	3E-8				NR [~ 8900000] (imputed)	N
689	chr9	13680158	13680159	rs117521979	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	9p23	NR	rs117521979-G	0.051	3E-6	(IFNgamma_STAT1_of_CD4p_T)			Illumina [5084123] (imputed)	N
689	chr9	13688436	13688437	rs4740554	30273415	Hatzikotoulas K	2018-05-31	Commun Biol	Genome-wide association study of developmental dysplasia of the hip identifies an association with GDF5.	Developmental dysplasia of the hip	770 European ancestry cases, 3,364 European ancestry controls	1,129 European ancestry cases, 4,652 European ancestry controls	9p23	NR	rs4740554-C	0.10	4E-6		1.3	[1.16-1.45]	Illumina [256867]	N
689	chr9	13703274	13703275	rs606472	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 140)	19,670 European ancestry individuals	NA	9p23		rs606472-?	NR	3E-9				NR [9705931] (imputed)	N
689	chr9	13704538	13704539	rs1998584	25866641	Xu W	2015-03-19	Biomark Res	A genome wide association study on Newfoundland colorectal cancer patients' survival outcomes.	Survival in microsatellite instability low/stable colorectal cancer	431 European ancestry cases	NA	9p23	intergenic	rs1998584-?		2E-6	(overall survival)	1.76	[1.39-2.22]	Illumina [729737]	N
689	chr9	13708606	13708607	rs524126	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Longevity	up to 482,000 European ancestry individuals	NA	9p23	NR	rs524126-A	NR	3E-7		0.01113	[0.0069-0.0154] unit decrease	Illumina [~ 540852]	N
689	chr9	13716675	13716676	rs79858048	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Monocyte chemoattractant protein-1 levels	8,293 Finnish ancestry individuals	NA	9p23	NR	rs79858048-G		5E-6		0.4532	[0.26-0.65] SD units increase	NR [10700000] (imputed)	N
689	chr9	13719202	13719203	rs7039168	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	9p23	NFIB	rs7039168-A	0.327103	2E-8		0.0115176	[0.0075-0.0155] unit decrease	Affymetrix [NR] (imputed)	N
689	chr9	13722478	13722479	rs10961205	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	9p23	NR	rs10961205-A	0.582604	5E-8		0.00712592	[0.0047-0.0096] unit increase	Affymetrix [16585854] (imputed)	N
689	chr9	13722478	13722479	rs10961205	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	9p23	NR	rs10961205-A	0.582604	2E-6		0.00737318	[0.0045-0.0102] unit increase	Affymetrix [16585866] (imputed)	N
689	chr9	13723811	13723812	rs1556494	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	9p23		rs1556494-G	NR	1E-9		0.0123	[0.0084-0.0162] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
689	chr9	13724050	13724051	rs10961206	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	9p23	intergenic	rs10961206-A	0.901	2E-7		0.057	[0.035-0.079] unit increase	Affymetrix [7947838] (imputed)	N
689	chr9	13730046	13730047	rs10120807	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	9p23		rs10120807-G	NR	4E-8		0.0119	[0.0076-0.0162] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
689	chr9	13731214	13731215	rs74865852	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs74865852-G	0.985025	6E-9		0.220742	[0.15-0.29] increase	Affymetrix [11014269] (imputed)	N
689	chr9	13735017	13735018	rs556555980	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9p23	NR	rs556555980-A	0.0122	1E-8	(DPYSL2)	0.2807	NR unit increase	Illumina [1671387] (imputed)	N
690	chr9	13765588	13765589	rs72711965	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs72711965-G	0.710901	3E-12		0.0695738	[0.05-0.089] increase	Affymetrix [11014269] (imputed)	N
690	chr9	13779790	13779791	rs10733271	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	9p23	NR	rs10733271-?	NR	2E-6				Illumina [at least 7383741] (imputed)	N
690	chr9	13844677	13844678	rs59827721	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Inflammatory skin disease	2,079 European ancestry atopic dermatitis cases, 4,212 European ancestry psoriasis cases, 11,899 European ancestry controls	NA	9p23	LINC00583	rs59827721-?	NR	2E-10	(Psoriasis)			Affymetrix, Illumina [~ 5200000]	N
691	chr9	13930481	13930481	rs35468074	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	Factor VIII levels	25,897 European ancestry individuals, 4,500 African American individuals, 773 Asian ancestry individuals, 1,440 Hispanic individuals	NA	9p23	LINC00583, NFIB	rs35468074-?	0.85	3E-10		0.0315	[0.022-0.041] unit decrease	Affymetrix, Illumina [13887196] (imputed)	N
691	chr9	13930481	13930481	rs35468074	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	Factor VIII levels	25,897 European ancestry individuals, 4,500 African American individuals, 773 Asian ancestry individuals, 1,440 Hispanic individuals	NA	9p23	LINC00583, NFIB	rs35468074-?	0.84	2E-10	(EA)	0.0335	[0.023-0.044] unit decrease	Affymetrix, Illumina [13887196] (imputed)	N
691	chr9	13939883	13939884	rs17277467	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	9p23		rs17277467-T	0.18	1E-22		9.77	z score increase	Affymetrix [9061022] (imputed)	N
691	chr9	13941395	13941396	rs13299074	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	9p23		rs13299074-C	0.18	2E-16		8.26	z score increase	Affymetrix [9061022] (imputed)	N
691	chr9	13941395	13941396	rs13299074	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	9p23		rs13299074-?	NR	1E-9				NR [~ 8900000] (imputed)	N
691	chr9	13941512	13941513	rs13298062	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	9p23	NA	rs13298062-A	0.8111	2E-9		0.0131	[0.0088-0.0174] unit increase	NR [~ 27400000] (imputed)	N
691	chr9	13942939	13942940	rs77457752	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	9p23	NR	rs77457752-A	0.1294	8E-7	(EA)	0.0462	[0.028-0.064] unit decrease	Illumina [~ 11800000] (imputed)	N
691	chr9	13949665	13949666	rs13283645	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	9p23	NR	rs13283645-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
691	chr9	13950592	13950593	rs17277593	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	9p23		rs17277593-A	0.18	1E-9		6.11	z score increase	Affymetrix [9061022] (imputed)	N
691	chr9	13950592	13950593	rs17277593	28881265	Sobalska-Kwapis M	2017-09-01	Eur J Obstet Gynecol Reprod Biol	New variants near RHOJ and C2, HLA-DRA region and susceptibility to endometriosis in the Polish population-The genome-wide association study.	Endometriosis	171 European ancestry cases, 2,934 European ancestry controls	NA	9p23	NR	rs17277593-A	0.2127	5E-6		1.802	[1.396-2.327]	Illumina [274400]	N
691	chr9	13951618	13951619	rs71511071	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	9p23	NR	rs71511071-T	0.1869	3E-9				NR [9056863] (imputed)	N
691	chr9	13953420	13953421	rs71511072	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	9p23	NR	rs71511072-T	0.1713	1E-17				NR [9056863] (imputed)	N
691	chr9	13975941	13975942	rs13302409	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	9p23		rs13302409-C	NR	1E-30		0.0221	[0.018-0.026] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
691	chr9	13976284	13976285	rs17278406	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	9p23		rs17278406-A	NR	2E-28		0.0231	[0.019-0.027] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
691	chr9	13976284	13976285	rs17278406	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	9p23		rs17278406-A	NR	5E-32		0.0236	[0.02-0.028] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
691	chr9	13976284	13976285	rs17278406	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	9p23		rs17278406-A	0.301621	2E-34		0.029562408	[0.025-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
691	chr9	13976284	13976285	rs17278406	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	9p23		rs17278406-A	0.301581	2E-45		0.034231447	[0.029-0.039] unit decrease	Affymetrix [93095623] (imputed)	N
691	chr9	13976284	13976285	rs17278406	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	9p23		rs17278406-A	0.301626	1E-49		0.0358296	[0.031-0.041] unit decrease	Affymetrix [93095623] (imputed)	N
691	chr9	13976284	13976285	rs17278406	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9p23	NR	rs17278406-A	0.246363	5E-48				Affymetrix, Illumina [24332387] (imputed)	N
691	chr9	13976284	13976285	rs17278406	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	9p23	NR	rs17278406-A	0.301529	2E-50		0.030244	[0.026-0.034] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
691	chr9	13976284	13976285	rs17278406	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9p23	NR	rs17278406-A	0.247749	3E-60				Affymetrix, Illumina [24653286] (imputed)	N
691	chr9	13976284	13976285	rs17278406	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	9p23	NR	rs17278406-A	0.301546	5E-63		0.033745	[0.03-0.038] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
691	chr9	13976284	13976285	rs17278406	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9p23	NR	rs17278406-A	0.249857	1E-64				Affymetrix, Illumina [24558453] (imputed)	N
691	chr9	13976284	13976285	rs17278406	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	9p23	NR	rs17278406-A	0.30166	3E-67		0.034994	[0.031-0.039] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
691	chr9	13976284	13976285	rs17278406	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	9p23		rs17278406-?	NR	7E-40				NR [~ 8900000] (imputed)	N
691	chr9	13980151	13980152	rs7875291	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	9p23	intergenic	rs7875291-A		2E-37		0.029	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
691	chr9	13980151	13980152	rs7875291	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	9p23	intergenic	rs7875291-A	0.3628	2E-15		0.02944306	[0.022-0.037] unit decrease	Affymetrix [~ 2500000] (imputed)	N
691	chr9	13980151	13980152	rs7875291	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	9p23	intergenic	rs7875291-A	0.3628	1E-17		0.0317271	[0.024-0.039] unit decrease	Affymetrix [~ 2500000] (imputed)	N
691	chr9	13980151	13980152	rs7875291	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	9p23	intergenic	rs7875291-A	0.3629	4E-18		0.03202653	[0.025-0.039] unit decrease	Affymetrix [~ 2500000] (imputed)	N
691	chr9	13986132	13986133	rs17278798	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	9p23	LINC00583	rs17278798-G	0.626646	7E-10		0.0118149	[0.0081-0.0156] unit decrease	NR [13737936] (imputed)	N
691	chr9	13986132	13986133	rs17278798	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	9p23		rs17278798-?	NR	4E-8				NR [~ 8900000] (imputed)	N
691	chr9	13986132	13986133	rs17278798	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	9p23		rs17278798-?	NR	3E-11		0.0127976	[0.0086-0.017] unit decrease	Affymetrix [20259828] (imputed)	N
691	chr9	13992262	13992263	rs10810071	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	9p23		rs10810071-?	NR	5E-9				NR [~ 8900000] (imputed)	N
691	chr9	13993594	13993595	rs1885429	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9p23		rs1885429-?	NR	6E-9				NR [~ 8900000] (imputed)	N
691	chr9	14014288	14014289	rs12001652	28282560	Pott J	2017-02-24	Atherosclerosis	Genome-wide meta-analysis identifies novel loci of plaque burden in carotid artery.	Carotid plaque burden	7,189 European ancestry individuals	NA	9p23	PES1P2	rs12001652-A	NR	7E-6		0.14492787	[0.082-0.208] unit decrease	Affymetrix [9576485] (imputed)	N
691	chr9	14017184	14017185	rs1322131	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	9p23	Intergenic	rs1322131-A	0.4202	1E-8	(MTAG)	0.0103	[0.0068-0.0138] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
691	chr9	14017184	14017185	rs1322131	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	9p23	Intergenic	rs1322131-A	0.4202	9E-9		0.0113	[0.0074-0.0152] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
691	chr9	14020435	14020436	rs10115804	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	9p23	NR	rs10115804-A	NR	2E-10		0.0176	[0.012-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
692	chr9	14064740	14064741	rs7039300	23419831	Ramanan VK	2013-02-19	Mol Psychiatry	APOE and BCHE as modulators of cerebral amyloid deposition: a florbetapir PET genome-wide association study.	Alzheimer's disease biomarkers	555 European ancestry individuals	NA	9p23	NFIB	rs7039300-G	0.23	2E-6	(Cortical Ab)			Illumina [6108668] (imputed)	N
692	chr9	14068851	14068852	rs73407797	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	9p23	NR	rs73407797-G	0.897889	1E-8		0.00812488	[0.0054-0.0109] unit increase	Affymetrix [16582909] (imputed)	N
692	chr9	14068851	14068852	rs73407797	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	9p23	NR	rs73407797-G	0.897889	2E-6		0.00802519	[0.005-0.0111] unit increase	Affymetrix [16582965] (imputed)	N
692	chr9	14075094	14075095	rs4741343	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	9p23	NR	rs4741343-A	0.1776	2E-8		0.016254885	NR unit decrease	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
692	chr9	14075864	14075865	rs1689281	33602968	Skuladottir AT	2021-02-18	Sci Rep	A meta-analysis uncovers the first sequence variant conferring risk of Bell's palsy.	Bell's palsy	4,714 European ancestry cases, 1,011,520 European ancestry controls	NA	9p23	intergenic	rs1689281-T	0.1615	8E-6		0.87529	NR	Affymetrix, Illumina [30341632] (imputed)	N
692	chr9	14077377	14077378	rs73648455	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	9p23		rs73648455-T	0.0797	2E-12		0.0183	[0.013-0.023] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
692	chr9	14116483	14116484	rs498010	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	9p23	NR	rs498010-T	NR	3E-10		0.0194	[0.013-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
692	chr9	14136868	14136869	rs7030475	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	9p23		rs7030475-?	NR	3E-11				NR [~ 8900000] (imputed)	N
692	chr9	14141702	14141703	rs73642097	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	9p23	NR	rs73642097-G	0.2052	2E-9		0.0291	[0.019-0.039] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
692	chr9	14151959	14151960	rs4237133	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	9p23	Intergenic	rs4237133-C	0.1718	3E-16	(MTAG)	0.0178	[0.013-0.022] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
692	chr9	14154230	14154231	rs723968	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	9p23		rs723968-T	0.8557	7E-18	(conditional-joint)	0.0172	[0.013-0.021] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
692	chr9	14155417	14155418	rs7863447	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	9p23		rs7863447-A	NR	3E-8		0.0127	[0.0082-0.0172] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
693	chr9	14161669	14161670	rs10810098	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	9p23		rs10810098-?	NR	2E-9				NR [~ 8900000] (imputed)	N
693	chr9	14161926	14161927	rs10810099	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	9p23		rs10810099-A	0.2734	2E-20		0.0146	[0.011-0.018] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
693	chr9	14161926	14161927	rs10810099	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	9p23	Intergenic	rs10810099-A	0.2734	3E-23	(MTAG)	0.0146	[0.012-0.018] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
693	chr9	14161926	14161927	rs10810099	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	9p23	Intergenic	rs10810099-A	0.2783	9E-10	(MTAG)	0.0157	[0.011-0.021] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
693	chr9	14190286	14190287	rs7034162	26084801	Mirabello L	2015-06-17	Cancer Discov	A Genome-Wide Scan Identifies Variants in NFIB Associated with Metastasis in Patients with Osteosarcoma.	Metastasis at diagnosis in osteosarcoma	122 European ancestry cases with metastasis, 419 European ancestry cases without metastasis	43 European ancestry cases with metastasis, 22 African ancestry cases with metastasis, 40 Brazilian ancestry cases with metastasis, 183 European ancestry cases without metastasis, 39 African ancestry cases without metastasis, 67 Brazilian ancestry cases without metastasis	9p23	NFIB	rs7034162-A	0.11	3E-8	(EA)	2.62	[1.86-3.68]	Illumina [447040]	N
693	chr9	14190286	14190287	rs7034162	26084801	Mirabello L	2015-06-17	Cancer Discov	A Genome-Wide Scan Identifies Variants in NFIB Associated with Metastasis in Patients with Osteosarcoma.	Metastasis at diagnosis in osteosarcoma	122 European ancestry cases with metastasis, 419 European ancestry cases without metastasis	43 European ancestry cases with metastasis, 22 African ancestry cases with metastasis, 40 Brazilian ancestry cases with metastasis, 183 European ancestry cases without metastasis, 39 African ancestry cases without metastasis, 67 Brazilian ancestry cases without metastasis	9p23	NFIB	rs7034162-A	0.1	1E-9		2.43	[1.83-3.24]	Illumina [447040]	N
693	chr9	14195826	14195827	rs10810107	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	9p23	Intergenic	rs10810107-C	0.4539	6E-10		0.0141	[0.0096-0.0186] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
693	chr9	14210896	14210897	rs12238011	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	9p22.3		rs12238011-T	0.0809	5E-8		0.0141	[0.009-0.0192] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
693	chr9	14222781	14222782	rs4741351	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	9p22.3		rs4741351-A	0.3097	2E-8		42.168922	z score increase	NR [6814003]	N
693	chr9	14222781	14222782	rs4741351	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	9p22.3	NR	rs4741351-A	0.3029	3E-10		0.015387289	NR unit decrease	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
693	chr9	14224062	14224063	rs10961430	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	9p22.3	NFIB	rs10961430-?	NR	1E-10		0.013740266	[0.0095-0.0179] unit increase	NR [7306098]	N
693	chr9	14224625	14224626	rs10810118	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	9p22.3	NR	rs10810118-?	NR	8E-6		4.474	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
693	chr9	14228470	14228471	rs10961433	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	9p22.3	AL136366.1	rs10961433-G	0.867	2E-6		0.079	[0.046-0.112] unit increase	Affymetrix, Illumina [7374092] (imputed)	N
693	chr9	14238792	14238793	rs1322985	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	9p22.3	NFIB	rs1322985-A	0.309189	5E-9		0.014049831	[0.0093-0.0188] unit increase	Affymetrix [93095623] (imputed)	N
693	chr9	14238792	14238793	rs1322985	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	9p22.3		rs1322985-?	NR	3E-8				NR [~ 8900000] (imputed)	N
693	chr9	14247345	14247346	rs13286037	28957384	Kim SK	2017-09-28	PLoS One	Two genetic loci associated with ankle injury.	Ankle injury	1,421 European ancestry cases, 154 Hispanic/Latino cases, 121 East Asian ancestry cases, 81,843 European ancestry controls, 8,406 Hispanic/Latino controls, 7,397 East Asian ancestry controls	NA	9p22.3	NFIB	rs13286037-A	0.025	5E-8		1.6254	[1.46-1.8]	Affymetrix [8183964] (imputed)	N
693	chr9	14256212	14256213	rs10733277	31806883	de Las Fuentes L	2019-12-06	Pharmacogenomics J	Genome-wide meta-analysis of variant-by-diuretic interactions as modulators of lipid traits in persons of European and African ancestry.	HDL cholesterol levels x thiazide or thiazide-like diuretics use interaction	6,878 European ancestry exposed individuals, 30,715 European ancestry unexposed individuals, 3,923 African American and African ancestry exposed individuals, 5,218 African American and African ancestry unexposed individuals	NA	9p22.3	NFIB	rs10733277-?	NR	7E-7	(African)	0.2219	[0.14-0.31] unit increase	Affymetrix, Illumina [NR] (imputed)	N
694	chr9	14292137	14292138	rs10961464	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	9p22.3	NFIB	rs10961464-G	0.679875	2E-10		0.00342341	[0.0023-0.0045] unit decrease	Affymetrix [13995440] (imputed)	N
694	chr9	14292137	14292138	rs10961464	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	9p22.3	NR	rs10961464-A	NR	3E-10		0.0161	[0.011-0.021] unit increase	Affymetrix [9000000] (imputed)	N
694	chr9	14292566	14292567	rs10961465	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	9p22.3		rs10961465-A	NR	1E-9		0.0126	[0.0085-0.0167] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
694	chr9	14292719	14292720	rs10121140	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	9p22.3	NFIB	rs10121140-A	0.322	4E-6		0.031	[0.017-0.045] unit decrease	Affymetrix [7947838] (imputed)	N
694	chr9	14294630	14294631	rs140086663	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9p22.3	NR	rs140086663-C	0.01045	9E-9	(PHB)	0.5955	NR unit increase	Illumina [1671387] (imputed)	N
694	chr9	14302727	14302728	rs10961468	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	9p22.3	Intergenic	rs10961468-C	0.697	4E-8	(MTAG)	0.0081	[0.0052-0.011] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
694	chr9	14342889	14342890	rs13295646	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	9p22.3		rs13295646-G	0.32	2E-15		7.94	z score increase	Affymetrix [9061022] (imputed)	N
694	chr9	14342889	14342890	rs13295646	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	9p22.3		rs13295646-G	0.32	3E-8		5.53	z score increase	Affymetrix [9061022] (imputed)	N
694	chr9	14346342	14346343	rs72700531	30420678	Tasa T	2018-11-12	Eur J Hum Genet	Genetic variation in the Estonian population: pharmacogenomics study of adverse drug effects using electronic health records.	Adverse response to drug	16,226 European ancestry individuals	NA	9p22.3	NFIB	rs72700531-T	0.056	4E-7	(Beta blocking agents, selective [C07AB])	2.05		Illumina [16500000] (imputed)	N
694	chr9	14385652	14385653	rs372109878	34404248	Tsao YC	2021-08-18	Cephalalgia	Genome-wide association study reveals susceptibility loci for self-reported headache in a large community-based Asian population.	Headache	2,084 Taiwanese ancestry cases, 11,822 Taiwanese ancestry controls	NA	9p22.3		rs372109878-C	0.0013	7E-7		3.812	[2.161-6.726]	Affymetrix [7842171] (imputed)	N
694	chr9	14405800	14405801	rs1570499	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	9p22.3	ZDHHC21	rs1570499-?	NR	8E-6	(LPC 18:2)	0.18910037	[0.11-0.27] unit increase	Affymetrix [at least 2500000] (imputed)	N
695	chr9	14429306	14429307	rs4741377	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	9p22.3		rs4741377-T	0.5806	4E-8	(conditional-joint)	0.0078	[0.0051-0.0105] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
695	chr9	14430691	14430692	rs10810145	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	9p22.3		rs10810145-A	0.4144	4E-8		0.0078	[0.0051-0.0105] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
695	chr9	14441676	14441677	rs59677118	23743675	Kapoor M	2013-06-07	Hum Genet	A meta-analysis of two genome-wide association studies to identify novel loci for maximum number of alcoholic drinks.	Alcohol consumption	2,322 European ancestry individuals from 118 families, 2,593 European ancestry individuals		9p22.3	intergenic	rs59677118-?	0.06	1E-6		0.14	[0.081-0.199] unit increase	Illumina [4058415] (imputed)	N
695	chr9	14442594	14442595	rs424539	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	9p22.3		rs424539-G	NR	2E-8		0.0123	[0.008-0.0166] unit increase	Affymetrix, Illumina [20529698] (imputed)	N
695	chr9	14442594	14442595	rs424539	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	9p22.3		rs424539-G	0.38	5E-8				NR [NR] (imputed)	N
695	chr9	14442594	14442595	rs424539	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	9p22.3		rs424539-G	0.38	1E-11		0.01	% increase	NR [NR] (imputed)	N
695	chr9	14442594	14442595	rs424539	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	9p22.3	NR	rs424539-C	0.620439	4E-9		0.0127715	[0.0085-0.017] unit decrease	NR [NR]	N
695	chr9	14442594	14442595	rs424539	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	9p22.3		rs424539-?	NR	8E-12				NR [~ 8900000] (imputed)	N
695	chr9	14446000	14446001	rs1556032	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	9p22.3		rs1556032-T	NR	7E-13		0.0092	[0.0067-0.0117] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
695	chr9	14446000	14446001	rs1556032	19754311	Le Clerc S	2009-09-15	J Infect Dis	Genomewide association study of a rapid progression cohort identifies new susceptibility alleles for AIDS (ANRS Genomewide Association Study 03).	AIDS	85 European ancestry cases, 2,049 European ancestry controls	NA	9p22.3	NR	rs1556032-C	0.49	9E-6		2.05	[1.48-2.84]	Illumina [291119]	N
695	chr9	14455075	14455076	rs7031064	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	9p22.3	NR	rs7031064-?	NR	1E-10				Affymetrix [~ 8270000] (imputed)	N
695	chr9	14455075	14455076	rs7031064	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	9p22.3	NA	rs7031064-A	0.5267	1E-10		0.011	[0.0077-0.0143] unit increase	NR [~ 27400000] (imputed)	N
695	chr9	14456930	14456931	rs10046853	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9p22.3		rs10046853-?	NR	4E-15				NR [~ 8900000] (imputed)	N
695	chr9	14457482	14457483	rs149135564	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	9p22.3	NR	rs149135564-A	0.053	8E-6	(IFNalpha_ABC_of_CD56brightCD16n)			Illumina [5084123] (imputed)	N
695	chr9	14459088	14459089	rs10756555	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		9p22.3	NFIB	rs10756555-G	0.539336	2E-13		0.0102529	[0.0075-0.013] unit increase	Affymetrix [12370749]	N
695	chr9	14470832	14470833	rs10961534	22493691	Eriksson N	2012-04-06	PLoS One	Novel associations for hypothyroidism include known autoimmune risk loci.	Hypothyroidism	3,736 European ancestry cases, 35,546 European ancestry controls	NA	9p22.3	TRNAH, GUG, ZDHHC21	rs10961534-G	0.116	7E-6		1.193	[1.11-1.29]	Illumina [870065]	N
695	chr9	14480819	14480820	rs303751	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 38)	4,680 European ancestry individuals	3,566 European ancestry individuals	9p22.3		rs303751-A	0.245957918	3E-12				Illumina [7417619] (imputed)	N
695	chr9	14484997	14484998	rs72702916	29855589	Chernus J	2018-05-31	Sci Rep	GWAS reveals loci associated with velopharyngeal dysfunction.	Velopharyngeal dysfunction	54 Hispanic or Latin American and unknown ancestry cases, 922 Hispanic or Latin American and unknown ancestry controls	NA	9p22.3	NR	rs72702916-?	NR	1E-7		0.1032102	[NR] unit decrease	Illumina [at least 269494] (imputed)	N
695	chr9	14494844	14494845	rs7875078	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	9p22.3	Intergenic	rs7875078-A	0.4595	2E-11	(MTAG)	0.0111	[0.0078-0.0144] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
695	chr9	14494844	14494845	rs7875078	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	9p22.3		rs7875078-A	0.4564	3E-8		0.0078	[0.0051-0.0105] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
695	chr9	14494844	14494845	rs7875078	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	9p22.3	Intergenic	rs7875078-A	0.4564	5E-11	(MTAG)	0.0086	[0.0061-0.0111] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
695	chr9	14505860	14505861	rs4615688	33169155	Bigdeli TB	2020-11-10	Schizophr Bull	Genome-Wide Association Studies of Schizophrenia and Bipolar Disorder in a Diverse Cohort of US Veterans.	Schizophrenia	44,794 European ancestry cases, 7,509 African American cases, 1,234 Latino cases, 112,777 European ancestry controls, 8,337 African American controls, 3,090 Latino controls	NA	9p22.3	ZDHHC21	rs4615688-G	NR	1E-9		1.07	[1.05-1.09]	Affymetrix [up to 49134253] (imputed)	N
695	chr9	14505991	14505992	rs303739	33169155	Bigdeli TB	2020-11-10	Schizophr Bull	Genome-Wide Association Studies of Schizophrenia and Bipolar Disorder in a Diverse Cohort of US Veterans.	Schizophrenia	37,759 European ancestry cases, 7,509 African American cases, 1,234 Latino cases, 22,778 East Asian ancestry cases, 91,590 European ancestry controls, 8,337 African American controls, 3,090 Latino controls, 35,362 East Asian ancestry controls	NA	9p22.3	ZDHHC21	rs303739-C	NR	7E-9		1.06	[1.04-1.08]	Affymetrix [up to 49134253] (imputed)	N
695	chr9	14514365	14514366	rs4741388	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	9p22.3		rs4741388-C	0.28	3E-11		0.008	[0.006-0.01] unit increase	NR [NR] (imputed)	N
695	chr9	14516666	14516667	rs1328006	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	9p22.3	Intergenic	rs1328006-T	0.5196	3E-9	(MTAG)	0.0106	[0.0071-0.0141] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
695	chr9	14518828	14518829	rs873553	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	9p22.3	RP11-408A13.2	rs873553-C	0.478	1E-8		0.011539359	[0.0076-0.0155] unit increase	Affymetrix [up to 18485882] (imputed)	N
695	chr9	14533583	14533584	rs10961555	34642315	Ferreiro-Iglesias A	2021-10-12	Nat Commun	Germline determinants of humoral immune response to HPV-16 protect against oropharyngeal cancer.	Oropharynx cancer and human papilloma virus 16 negative oropharyngeal cancer	2,359 European ancestry cases, 565 European ancestry controls	NA	9p22.3		rs10961555-C	NR	2E-6		0.8174		Illumina [up to 7574753] (imputed)	N
695	chr9	14534504	14534505	rs10756571	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	9p22.3	NR	rs10756571-T	0.6853	2E-8		1.037	[1.03-1.05]	Affymetrix, Illumina [NR] (imputed)	N
695	chr9	14545780	14545781	rs75758554	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9p22.3	NR	rs75758554-A	0.01916	5E-11	(AZGP1)	0.02585	NR unit increase	Illumina [1671387] (imputed)	N
696	chr9	14555895	14555896	rs7047109	31991592	Coltell O	2020-01-24	Nutrients	Genome-Wide Association Study for Serum Omega-3 and Omega-6 Polyunsaturated Fatty Acids: Exploratory Analysis of the Sex-Specific Effects and Dietary Modulation in Mediterranean Subjects with Metabolic Syndrome.	Serum total polyunsaturated fatty acid concentration in metabolic syndrome	426 Mediterranean individuals	NA	9p22.3	intergenic	rs7047109-?	NR	3E-6				Illumina [621723]	N
696	chr9	14561673	14561674	rs117379242	34330890	Ip HF	2021-07-30	Transl Psychiatry	Genetic association study of childhood aggression across raters, instruments, and age.	Childhood aggressive behavior	87,485 European ancestry individuals	NA	9p22.3		rs117379242-T	0.02342771	2E-6		0.08568311	[0.051-0.121] unit increase	Affymetrix, Illumina [up to 7284995] (imputed)	N
696	chr9	14562313	14562314	rs10961577	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue adjusted for BMI	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	9p22.3	ZDHHC21	rs10961577-C	0.96	7E-6	(men)			Affymetrix, Illumina [2500000] (imputed)	N
696	chr9	14566857	14566858	rs114797419	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9p22.3	NR	rs114797419-A	0.02962	4E-10	(AGXT)	4.413	NR unit increase	Illumina [1671387] (imputed)	N
696	chr9	14566857	14566858	rs114797419	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9p22.3	NR	rs114797419-A	0.02962	2E-9	(HSD17B4)	0.9577	NR unit increase	Illumina [1671387] (imputed)	N
696	chr9	14595484	14595485	rs189749048	32724131	Li QS	2020-07-28	Sci Rep	Genome-wide association study and polygenic risk score analysis of esketamine treatment response.	Response to esketamine in treatment resistant depression	255 European ancestry individuals	NA	9p22.3	NR	rs189749048-?		9E-6		41.4729	[23.39-59.55] unit decrease	NR [NR] (imputed)	N
696	chr9	14648129	14648130	rs7849480	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	9p22.3		rs7849480-A	0.4353	4E-9		0.0084	[0.0057-0.0111] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
696	chr9	14672651	14672652	rs4278237	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	9p22.3	Intergenic	rs4278237-A	0.773	2E-10	(MTAG)	0.0099	[0.0068-0.013] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
697	chr9	14712671	14712672	rs116233634	31497858	Dumitrescu L	2019-09-01	Brain	Sex differences in the genetic predictors of Alzheimer's pathology.	Neuritic plaque	2,701 European ancestry men, 3,275 European ancestry women	NA	9p22.3	ZDHHC21, CER1	rs116233634-G	0.017857	8E-6		1.265504	[0.71-1.82] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
697	chr9	14723625	14723626	rs55670713	32472697	Verma SS	2020-05-30	Clin Pharmacol Ther	Genome-wide association study of platelet reactivity and cardiovascular response in patients treated with clopidogrel: a study by the International Clopidogrel Pharmacogenomics Consortium (ICPC).	Cardiovascular death or myocardial infarction in response to clopidogrel treatment	102 European ancestry cases, 2,068 European ancestry controls	NA	9p22.3	ZDHHC21, CER1, FREM1	rs55670713-T	0.973647	6E-6		4.1872745	NR	Illumina [5009928] (imputed)	N
697	chr9	14735052	14735053	rs1048070	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	9p22.3		rs1048070-?	NR	2E-9				NR [~ 8900000] (imputed)	N
697	chr9	14745885	14745886	rs7865801	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first birth	542,901 European ancestry individuals	NA	9p22.3	FREM1	rs7865801-A	0.6329	3E-8		0.0536	[0.035-0.073] unit increase	NR [9744772] (imputed)	N
697	chr9	14746467	14746468	rs200778244	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Chronic lymphocytic leukemia	764 White British ancestry cases, 272,079 White British ancestry controls	NA	9p22.3		rs200778244-?	NR	2E-6		17.358	[16.18-18.54]	NR [663083]	N
697	chr9	14758227	14758228	rs7040337	31497858	Dumitrescu L	2019-09-01	Brain	Sex differences in the genetic predictors of Alzheimer's pathology.	Neuritic plaque	2,701 European ancestry men	NA	9p22.3	FREM1	rs7040337-T	0.187035	9E-8		0.491925	[0.31-0.67] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
697	chr9	14775858	14775859	rs10733289	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	9p22.3		rs10733289-?	NR	9E-11				NR [~ 8900000] (imputed)	N
697	chr9	14777394	14777395	rs7046483	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	9p22.3	NR	rs7046483-?	NR	7E-11				Affymetrix [~ 8270000] (imputed)	N
697	chr9	14787477	14787478	rs138290719	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		FREM1	rs138290719-?	NR	4E-10	(male)	2.13867	[NR] unit decrease	Affymetrix [NR] (imputed)	N
697	chr9	14787477	14787478	rs138290719	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		FREM1	rs138290719-?	NR	1E-12		2.43735	[NR] unit decrease	Affymetrix [NR] (imputed)	N
697	chr9	14790666	14790667	rs60113019	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	9p22.3	NR	rs60113019-?	NR	2E-8				Illumina [7760689] (imputed)	N
697	chr9	14790840	14790841	rs2291681	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	9p22.3	NR	rs2291681-?		8E-9		0.0127084	[0.0084-0.017] unit increase	Affymetrix [19400418] (imputed)	N
697	chr9	14791347	14791348	rs13296345	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	9p22.3		rs13296345-T	0.6299	5E-10		0.009	[0.0061-0.0119] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
697	chr9	14791347	14791348	rs13296345	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	9p22.3	Intergenic	rs13296345-T	0.6299	5E-11	(MTAG)	0.0089	[0.0062-0.0116] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
697	chr9	14795011	14795014	rs36009556	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	9p22.3		rs36009556-C	NR	9E-9		0.014	[0.0093-0.0187] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
697	chr9	14797515	14797516	rs7025814	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9p22.3	NR	rs7025814-T	0.02787	1E-8	(GART)	0.1024	NR unit increase	Illumina [1671387] (imputed)	N
698	chr9	14883253	14883254	rs72713618	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 17, height of vermillion upper lip)	2,187 European ancestry individuals	NA	9p22.3	FREM1	rs72713618-A	0.02132	2E-8		0.5917	[0.39-0.8] unit decrease	Illumina [10677593] (imputed)	N
698	chr9	14898160	14898161	rs10961780	19893584	Kim JJ	2009-11-06	J Hum Genet	Identification of 15 loci influencing height in a Korean population.	Height	8,842 Korean ancestry individuals	NA	9p22.3	FREM1	rs10961780-G	0.33	2E-6		0.4	[NR] cm decrease	Affymetrix [334546]	N
700	chr9	15077538	15077539	rs59693671	31626034	Thomsen H	2019-10-11	Melanoma Res	Genome-wide study on uveal melanoma patients finds association to DNA repair gene TDP1.	Presence of epithelioid cells in uveal melanoma	285 European ancestry cases, 286 European ancestry controls	NA	9p22.3		rs59693671-G	0.04	4E-6		3.15		Illumina [10258281] (imputed)	N
700	chr9	15104560	15104561	rs10756650	23934736	Yu B	2013-08-11	Genet Epidemiol	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels (Pyroglutamine)	1,260 African American individuals	NA	9p22.3	PSIP1P	rs10756650-A		5E-6		0.1	[0.06-0.15] unit increase	Affymetrix [~ 2500000] (imputed)	N
700	chr9	15157976	15157977	rs1780159	20705733	O'Seaghdha CM	2010-08-12	Hum Mol Genet	Common variants in the calcium-sensing receptor gene are associated with total serum calcium levels.	Calcium levels	20,611 European ancestry individuals	NA	9p22.3	C9orf52	rs1780159-T	NR	6E-6		0.03	[NR] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
700	chr9	15158601	15158602	rs10738388	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Bipolar disorder x sex interaction	19,924 European ancestry cases, 30,547 European ancestry controls	NA	9p22.3	LOC389705, TTC39B	rs10738388-C	0.3563	1E-5		0.1325	[0.074-0.191] unit increase	NR [NR] (imputed)	N
700	chr9	15181964	15181965	rs72700614	34620984	Skuladottir AT	2021-10-07	Commun Biol	A genome-wide meta-analysis uncovers six sequence variants conferring risk of vertigo.	Vertigo	48,072 European ancestry cases, 894,541 European ancestry controls	NA	9p22.3		rs72700614-A	NR	7E-6		0.78986		Affymetrix, Illumina [62056310] (imputed)	N
701	chr9	15216093	15216094	rs74680417	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Bipolar disorder	11,897 European ancestry female cases, 15,538 European ancestry female controls, 8,027 European ancestry male cases, 15,009 European ancestry male controls	NA	9p22.3	TTC39B	rs74680417-T	0.1373	6E-6	(female)	0.1383	[0.078-0.198] unit increase	NR [NR] (imputed)	N
701	chr9	15229621	15229622	rs475957	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	9p22.3	TTC39B	rs475957-T	0.1428	3E-6		0.0437	[0.025-0.062] unit decrease	NR [8041861] (imputed)	N
701	chr9	15255360	15255361	rs113261688	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	9p22.3	TTC39B	rs113261688-T	0.0652871283429454	6E-7	(F_Enterobacteriaceae_HB)	0.62392	[0.38-0.87] unit increase	Illumina [7711310] (imputed)	N
701	chr9	15258380	15258381	rs10961940	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	9p22.3	NR	rs10961940-G	NR	3E-9		0.0226	[0.015-0.03] unit increase	Affymetrix [9000000] (imputed)	N
701	chr9	15279392	15279393	rs117614852	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference	1,254 whole genome sequenced European ancestry individuals, 3,074 whole genome sequenced individuals, 29,716 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 701 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,050 Mylopotamos (founder/genetic isolate) individuals, 883 Pomak (founder/genetic isolate) individuals	205,909 European ancestry individuals	9p22.3	TTC39B	rs117614852-T	0.0072	5E-7		0.2672	[0.16-0.37] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
701	chr9	15283096	15283097	rs12003180	20889312	Wang KS	2010-10-01	Schizophr Res	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	9p22.3	NR	rs12003180-?	NR	5E-6		1.6032	[NR]	Affymetrix [722112]	N
701	chr9	15289577	15289578	rs471364	19060906	Kathiresan S	2008-12-07	Nat Genet	Common variants at 30 loci contribute to polygenic dyslipidemia.	HDL cholesterol	19,840 European ancestry individuals	Up to 20,623 European ancestry individuals	9p22.3	TTC39B	rs471364-C	0.12	3E-10		0.08	[0.02-0.14] s.d. decrease	Affymetrix, Illumina [~ 2600000] (imputed)	N
701	chr9	15293115	15293116	rs486349	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9p22.3	NR	rs486349-G	NR	2E-16		0.044	unit decrease	Affymetrix [at least 7091467] (imputed)	N
701	chr9	15293115	15293116	rs486349	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9p22.3	NR	rs486349-G	0.131	7E-15	(EA)	0.044	unit decrease	Affymetrix [at least 7091467] (imputed)	N
701	chr9	15294595	15294596	rs540885	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9p22.3	NR	rs540885-G	NR	3E-15		0.041	unit decrease	Affymetrix [at least 7091467] (imputed)	N
701	chr9	15294595	15294596	rs540885	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9p22.3	NR	rs540885-G	0.136	1E-13	(EA)	0.041	unit decrease	Affymetrix [at least 7091467] (imputed)	N
701	chr9	15294595	15294596	rs540885	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	HDL cholesterol	up to 62,166 European ancestry individuals	NA	9p22.3	TTC39B	rs540885-A	0.87	5E-10		0.055	[0.037-0.073] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
701	chr9	15295482	15295483	rs570524	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	High density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	9p22.3	TTC39B	rs570524-?		6E-10		0.0501	[0.034-0.066] unit decrease	Illumina [31500000] (imputed)	N
701	chr9	15295482	15295483	rs570524	30670697	Kilpelainen TO	2019-01-22	Nat Commun	Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity.	HDL cholesterol x physical activity interaction (2df test)	7,395 African American inactive individuals, 13,092 African American active individuals, 2,753 Asian ancestry inactive individuals, 3,650 Asian ancestry active individuals, 22,963 European ancestry inactive individuals, 61,939 European ancestry active individuals, 2,829 Hispanic or Latin American inactive individuals, 6,358 Hispanic or Latin American active individuals	1,886 African American inactive individuals, 1,892 African American active individuals, 1,217 South African Black ancestry inactive individuals, 389 South African Black ancestry active individuals, 2,494 East Asian ancestry inactive individuals, 1,947 East Asian ancestry active individuals,  724 South Asian ancestry inactive individuals, 1,425 South Asian ancestry active individuals, 41,042 European ancestry inactive individuals, 66,575 European ancestry active individuals, 2,619 Hispanic inactive individuals, 8,802 Hispanic active individuals	9p22.3	NR	rs570524-T	0.8575	3E-20	(EA)			Affymetrix, Illumina [at least 2500000] (imputed)	N
701	chr9	15296033	15296034	rs643531	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9p22.3	NR	rs643531-C	NR	2E-15		0.041	unit decrease	Affymetrix [at least 7091467] (imputed)	N
701	chr9	15296033	15296034	rs643531	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9p22.3	NR	rs643531-C	0.137	2E-13	(EA)	0.04	unit decrease	Affymetrix [at least 7091467] (imputed)	N
701	chr9	15296033	15296034	rs643531	20864672	Waterworth DM	2010-09-23	Arterioscler Thromb Vasc Biol	Genetic variants influencing circulating lipid levels and risk of coronary artery disease.	HDL cholesterol	up to 17,723 European ancestry individuals	up to 37,774 European ancestry individuals, up to 9,665 Indian Asian ancestry individuals	9p22.3	TTC39B	rs643531-C	0.07	7E-9		0.01	[0.009-0.017] unit decrease	Affymetrix, Illumina, Perlegen [2155369] (imputed)	N
701	chr9	15298665	15298666	rs675849	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	9p22.3		rs675849-T	0.139355	1E-11		0.0389538	[0.028-0.05] unit increase	NR [11722792] (imputed)	N
701	chr9	15298665	15298666	rs675849	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	9p22.3		rs675849-T	0.139355	5E-8		0.0303567	[0.019-0.041] unit decrease	NR [11722792] (imputed)	N
701	chr9	15298665	15298666	rs675849	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	9p22.3		rs675849-T	0.139355	1E-13		0.0412572	[0.03-0.052] unit decrease	NR [11722792] (imputed)	N
701	chr9	15298665	15298666	rs675849	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	9p22.3		rs675849-T	0.139355	2E-13		0.0438935	[0.032-0.056] unit decrease	NR [11722792] (imputed)	N
701	chr9	15298665	15298666	rs675849	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	9p22.3		rs675849-T	0.139355	4E-9		0.0330231	[0.022-0.044] unit decrease	NR [11722792] (imputed)	N
701	chr9	15298665	15298666	rs675849	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9p22.3	NR	rs675849-T	NR	3E-14		0.039	unit decrease	Affymetrix [at least 7091467] (imputed)	N
701	chr9	15298665	15298666	rs675849	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9p22.3	NR	rs675849-T	0.141	6E-13	(EA)	0.039	unit decrease	Affymetrix [at least 7091467] (imputed)	N
701	chr9	15300967	15300968	rs4008004	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total phospholipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	9p22.3		rs4008004-C	0.778144	9E-11		0.030799	[0.021-0.04] unit decrease	NR [11722792] (imputed)	N
701	chr9	15300967	15300968	rs4008004	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	9p22.3		rs4008004-C	0.778144	1E-9		0.0298718	[0.02-0.039] unit decrease	NR [11722792] (imputed)	N
701	chr9	15300967	15300968	rs4008004	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total fatty acid levels	115,006 European ancestry individuals	NA	9p22.3		rs4008004-C	0.778167	2E-9		0.0294412	[0.02-0.039] unit decrease	NR [11722792] (imputed)	N
701	chr9	15300967	15300968	rs4008004	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total esterified cholesterol levels	115,082 European ancestry individuals	NA	9p22.3		rs4008004-C	0.778144	7E-9		0.0278861	[0.018-0.037] unit decrease	NR [11722792] (imputed)	N
701	chr9	15300967	15300968	rs4008004	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol levels	115,082 European ancestry individuals	NA	9p22.3		rs4008004-C	0.778144	2E-8		0.0272709	[0.018-0.037] unit decrease	NR [11722792] (imputed)	N
701	chr9	15300967	15300968	rs4008004	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Polyunsaturated fatty acid levels	115,006 European ancestry individuals	NA	9p22.3		rs4008004-C	0.778167	3E-11		0.032262	[0.023-0.042] unit decrease	NR [11722792] (imputed)	N
701	chr9	15300967	15300968	rs4008004	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-6 fatty acid levels	115,006 European ancestry individuals	NA	9p22.3		rs4008004-C	0.778167	7E-12		0.0334374	[0.024-0.043] unit decrease	NR [11722792] (imputed)	N
701	chr9	15300967	15300968	rs4008004	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Linoleic acid levels	115,006 European ancestry individuals	NA	9p22.3		rs4008004-C	0.778167	1E-10		0.0316066	[0.022-0.041] unit decrease	NR [11722792] (imputed)	N
701	chr9	15300967	15300968	rs4008004	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small HDL	115,082 European ancestry individuals	NA	9p22.3		rs4008004-C	0.778144	5E-11		0.0320826	[0.023-0.042] unit decrease	NR [11722792] (imputed)	N
701	chr9	15302612	15302613	rs677622	33654266	Bonelli R	2021-03-02	Commun Biol	Identification of genetic factors influencing metabolic dysregulation and retinal support for MacTel, a retinal disorder.	Macular telangiectasia type 2	931 European ancestry cases, 3,745 European ancestry controls	NA	9p22.3	TTC39B	rs677622-G	0.869	1E-9			NR	Illumina [7289516] (imputed)	N
701	chr9	15302612	15302613	rs677622	33654266	Bonelli R	2021-03-02	Commun Biol	Identification of genetic factors influencing metabolic dysregulation and retinal support for MacTel, a retinal disorder.	Macular telangiectasia type 2	1,067 European or unknown ancestry cases, 3,799 European or unknown ancestry controls	NA	9p22.3	TTC39B	rs677622-G	0.869	3E-9		0.63	[0.54-0.73]	Illumina [7289516] (imputed)	N
701	chr9	15303582	15303583	rs1215112	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	9p22.3		rs1215112-G	0.136979	9E-12		0.0408251	[0.029-0.053] unit decrease	NR [11722792] (imputed)	N
701	chr9	15303582	15303583	rs1215112	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large HDL	115,082 European ancestry individuals	NA	9p22.3		rs1215112-G	0.13697	2E-16		0.0444415	[0.034-0.055] unit decrease	NR [11722792] (imputed)	N
701	chr9	15303582	15303583	rs1215112	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	9p22.3		rs1215112-G	0.13697	6E-21		0.0495441	[0.039-0.06] unit decrease	NR [11722792] (imputed)	N
701	chr9	15303582	15303583	rs1215112	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	9p22.3		rs1215112-G	0.13697	4E-24		0.0578488	[0.047-0.069] unit increase	NR [11722792] (imputed)	N
701	chr9	15303582	15303583	rs1215112	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large HDL	115,082 European ancestry individuals	NA	9p22.3		rs1215112-G	0.13697	1E-13		0.040199	[0.03-0.051] unit decrease	NR [11722792] (imputed)	N
701	chr9	15303582	15303583	rs1215112	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	HDL cholesterol levels	115,082 European ancestry individuals	NA	9p22.3		rs1215112-G	0.13697	4E-20		0.0493264	[0.039-0.06] unit decrease	NR [11722792] (imputed)	N
701	chr9	15303582	15303583	rs1215112	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	9p22.3		rs1215112-G	0.136953	8E-15		0.0413442	[0.031-0.052] unit increase	NR [11722792] (imputed)	N
701	chr9	15303582	15303583	rs1215112	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	9p22.3		rs1215112-G	0.13697	5E-32		0.062774	[0.052-0.073] unit decrease	NR [11722792] (imputed)	N
701	chr9	15303582	15303583	rs1215112	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	9p22.3		rs1215112-G	0.136979	2E-11		0.0401284	[0.028-0.052] unit increase	NR [11722792] (imputed)	N
701	chr9	15303582	15303583	rs1215112	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	9p22.3		rs1215112-G	0.13697	5E-20		0.0483342	[0.038-0.059] unit decrease	NR [11722792] (imputed)	N
701	chr9	15303582	15303583	rs1215112	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large HDL particles	115,082 European ancestry individuals	NA	9p22.3		rs1215112-G	0.13697	2E-23		0.0541284	[0.044-0.065] unit decrease	NR [11722792] (imputed)	N
701	chr9	15303582	15303583	rs1215112	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	9p22.3		rs1215112-G	0.13697	1E-22		0.051697	[0.041-0.062] unit decrease	NR [11722792] (imputed)	N
701	chr9	15303582	15303583	rs1215112	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	9p22.3		rs1215112-G	0.13697	1E-18		0.0474077	[0.037-0.058] unit decrease	NR [11722792] (imputed)	N
701	chr9	15303582	15303583	rs1215112	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	9p22.3		rs1215112-G	0.13697	2E-19		0.0479842	[0.038-0.058] unit decrease	NR [11722792] (imputed)	N
701	chr9	15303582	15303583	rs1215112	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	9p22.3		rs1215112-G	0.13697	2E-18		0.0474583	[0.037-0.058] unit decrease	NR [11722792] (imputed)	N
701	chr9	15303582	15303583	rs1215112	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	9p22.3		rs1215112-G	0.13697	4E-12		0.0397532	[0.029-0.051] unit decrease	NR [11722792] (imputed)	N
701	chr9	15303582	15303583	rs1215112	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	9p22.3		rs1215112-G	0.13697	1E-17		0.046393	[0.036-0.057] unit decrease	NR [11722792] (imputed)	N
701	chr9	15303582	15303583	rs1215112	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	9p22.3		rs1215112-G	0.13697	9E-20		0.0482322	[0.038-0.059] unit decrease	NR [11722792] (imputed)	N
701	chr9	15303582	15303583	rs1215112	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	9p22.3		rs1215112-A	NR	1E-14		0.0247	[0.018-0.031] unit increase	Affymetrix, Illumina [20536134] (imputed)	N
701	chr9	15303582	15303583	rs1215112	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	9p22.3		rs1215112-A	NR	4E-51		0.0484	[0.042-0.055] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
701	chr9	15303582	15303583	rs1215112	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	9p22.3	TTC39B	rs1215112-A	NR	3E-6				Affymetrix, Illumina [NR] (imputed)	N
701	chr9	15303582	15303583	rs1215112	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	9p22.3	TTC39B	rs1215112-A	NR	4E-41				Affymetrix, Illumina [NR] (imputed)	N
701	chr9	15303582	15303583	rs1215112	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	9p22.3	TTC39B	rs1215112-A	NR	2E-38	(EA)			Affymetrix, Illumina [NR] (imputed)	N
701	chr9	15303582	15303583	rs1215112	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	9p22.3	TTC39B	rs1215112-A	NR	8E-38				Affymetrix, Illumina [NR] (imputed)	N
701	chr9	15303582	15303583	rs1215112	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	9p22.3	TTC39B	rs1215112-A	NR	2E-37	(EA)			Affymetrix, Illumina [NR] (imputed)	N
701	chr9	15303582	15303583	rs1215112	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	9p22.3	TTC39B	rs1215112-A	NR	6E-21		0.013	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
701	chr9	15303582	15303583	rs1215112	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	9p22.3	TTC39B	rs1215112-A	NR	1E-18	(EA)	0.014	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
701	chr9	15303582	15303583	rs1215112	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	9p22.3	TTC39B	rs1215112-A	NR	9E-12		0.0118	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
701	chr9	15303582	15303583	rs1215112	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	9p22.3	TTC39B	rs1215112-A	NR	7E-11	(EA)	0.01451	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
701	chr9	15304781	15304782	rs686030	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	9p22.3		rs686030-C	0.140452	4E-8		0.0315556	[0.02-0.043] unit decrease	NR [11722792] (imputed)	N
701	chr9	15304781	15304782	rs686030	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium HDL	115,082 European ancestry individuals	NA	9p22.3		rs686030-C	0.140452	1E-10		0.0353489	[0.025-0.046] unit decrease	NR [11722792] (imputed)	N
701	chr9	15304781	15304782	rs686030	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in HDL	115,082 European ancestry individuals	NA	9p22.3		rs686030-C	0.140452	3E-18		0.0465452	[0.036-0.057] unit decrease	NR [11722792] (imputed)	N
701	chr9	15304781	15304782	rs686030	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total concentration of lipoprotein particles	115,082 European ancestry individuals	NA	9p22.3		rs686030-C	0.140452	3E-11		0.0373262	[0.026-0.048] unit decrease	NR [11722792] (imputed)	N
701	chr9	15304781	15304782	rs686030	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	9p22.3		rs686030-C	0.140583	1E-14		0.0457755	[0.034-0.057] unit increase	NR [11722792] (imputed)	N
701	chr9	15304781	15304782	rs686030	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	9p22.3		rs686030-C	0.140452	1E-47		0.0860668	[0.074-0.098] unit increase	NR [11722792] (imputed)	N
701	chr9	15304781	15304782	rs686030	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium HDL	115,082 European ancestry individuals	NA	9p22.3		rs686030-C	0.140452	5E-8		0.0302838	[0.019-0.041] unit decrease	NR [11722792] (imputed)	N
701	chr9	15304781	15304782	rs686030	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large HDL	115,082 European ancestry individuals	NA	9p22.3		rs686030-C	0.140452	5E-20		0.0478832	[0.038-0.058] unit decrease	NR [11722792] (imputed)	N
701	chr9	15304781	15304782	rs686030	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in HDL	115,082 European ancestry individuals	NA	9p22.3		rs686030-C	0.140452	6E-15		0.0419218	[0.031-0.052] unit decrease	NR [11722792] (imputed)	N
701	chr9	15304781	15304782	rs686030	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	9p22.3		rs686030-C	0.140452	4E-43		0.0776076	[0.067-0.089] unit decrease	NR [11722792] (imputed)	N
701	chr9	15304781	15304782	rs686030	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	9p22.3		rs686030-C	0.140452	2E-16		0.0446113	[0.034-0.055] unit decrease	NR [11722792] (imputed)	N
701	chr9	15304781	15304782	rs686030	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in HDL	115,082 European ancestry individuals	NA	9p22.3		rs686030-C	0.140452	3E-24		0.0535283	[0.043-0.064] unit decrease	NR [11722792] (imputed)	N
701	chr9	15304781	15304782	rs686030	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium HDL particles	115,082 European ancestry individuals	NA	9p22.3		rs686030-C	0.140452	1E-12		0.0388779	[0.028-0.05] unit decrease	NR [11722792] (imputed)	N
701	chr9	15304781	15304782	rs686030	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of HDL particles	115,082 European ancestry individuals	NA	9p22.3		rs686030-C	0.140452	2E-12		0.0393321	[0.028-0.05] unit decrease	NR [11722792] (imputed)	N
701	chr9	15304781	15304782	rs686030	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	9p22.3		rs686030-C	0.140452	8E-17		0.0488054	[0.037-0.06] unit increase	NR [11722792] (imputed)	N
701	chr9	15304781	15304782	rs686030	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium HDL	115,082 European ancestry individuals	NA	9p22.3		rs686030-C	0.140452	3E-12		0.0383085	[0.028-0.049] unit decrease	NR [11722792] (imputed)	N
701	chr9	15304781	15304782	rs686030	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	9p22.3		rs686030-C	0.140452	1E-10		0.0371041	[0.026-0.048] unit increase	NR [11722792] (imputed)	N
701	chr9	15304781	15304782	rs686030	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	9p22.3		rs686030-C	0.140452	1E-8		0.0339015	[0.022-0.046] unit increase	NR [11722792] (imputed)	N
701	chr9	15304781	15304782	rs686030	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	9p22.3		rs686030-C	0.140462	2E-8		0.0327539	[0.021-0.044] unit increase	NR [11722792] (imputed)	N
701	chr9	15304781	15304782	rs686030	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	9p22.3		rs686030-C	0.140452	4E-13		0.039793	[0.029-0.051] unit decrease	NR [11722792] (imputed)	N
701	chr9	15304781	15304782	rs686030	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	9p22.3		rs686030-C	0.140452	5E-20		0.0482824	[0.038-0.059] unit decrease	NR [11722792] (imputed)	N
701	chr9	15304781	15304782	rs686030	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein A1 levels	115,082 European ancestry individuals	NA	9p22.3		rs686030-C	0.140452	2E-16		0.0447423	[0.034-0.055] unit decrease	NR [11722792] (imputed)	N
701	chr9	15304781	15304782	rs686030	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cholelithiasis	26,122 European ancestry cases, 461,431 European ancestry controls, 9,305 East Asian ancestry cases, 168,253 East Asian ancestry controls	NA	9p22.3		rs686030-A	NR	1E-17		0.1158	[0.089-0.142] unit increase	Affymetrix, Illumina [25844936] (imputed)	N
701	chr9	15304781	15304782	rs686030	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cholecystitis	9,820 European ancestry cases, 461,431 European ancestry controls, 1,860 East Asian ancestry cases, 168,253 East Asian ancestry controls	NA	9p22.3		rs686030-A	NR	3E-9		0.1241	[0.083-0.165] unit increase	Affymetrix, Illumina [25842273] (imputed)	N
701	chr9	15304781	15304782	rs686030	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	9p22.3	TTC39B	rs686030-C	0.141178	1E-73		0.0497684	[0.044-0.055] unit decrease	Affymetrix [NR] (imputed)	N
701	chr9	15304781	15304782	rs686030	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	9p22.3	TTC39B	rs686030-C	0.141355	8E-89		0.0563409	[0.051-0.062] unit decrease	Affymetrix [NR] (imputed)	N
701	chr9	15304781	15304782	rs686030	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x short total sleep time interaction (2df test)	3,007 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,474 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, up to 11,901 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,567 European ancestry controls, 4,047 Hispanic/Latino controls	up to 221 African American short sleepers, 629 East Asian ancestry short sleepers, up to 9,585 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 2,504 East Asian ancestry controls, up to 38,027 European ancestry controls, 10,061 Hispanic controls	9p22.3	TTC39B	rs686030-?	NR	3E-11		0.007996	[0.0055-0.0105] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
701	chr9	15304781	15304782	rs686030	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	HDL cholesterol levels	up to 23,761 African ancestry individuals, 13,171 Asian ancestry individuals, up to 90,272 European ancestry individuals, 6,620 Hispanic individuals	NA	9p22.3		rs686030-A	0.8573	1E-12	(EA)	0.0127	[0.0092-0.0162] unit increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
701	chr9	15304781	15304782	rs686030	30504769	Ferkingstad E	2018-11-30	Nat Commun	Genome-wide association meta-analysis yields 20 loci associated with gallstone disease.	Gallstone disease	27,174 European ancestry cases, 736,838 European ancestry controls	NA	9p22.3	TTC39B	rs686030-?		2E-20		1.1363636	[1.11-1.18]	Affymetrix, Illumina [43000000] (imputed)	N
701	chr9	15304781	15304782	rs686030	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	9p22.3	TTC39B	rs686030-A	0.8696	1E-27		0.0431	[0.035-0.051] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
701	chr9	15304781	15304782	rs686030	27149984	Degenhardt F	2016-05-05	Hum Mol Genet	Genome-wide association study of serum coenzyme Q10 levels identifies susceptibility loci linked to neuronal diseases.	Coenzyme Q10 levels	up to 1,300 European ancestry individuals	NA	9p22.3	TTC39B	rs686030-A		1E-6		0.044	[0.026-0.062] unit decrease	Affymetrix, Illumina [up to 17017474] (imputed)	N
701	chr9	15304781	15304782	rs686030	27005778	Kettunen J	2016-03-23	Nat Commun	Genome-wide study for circulating metabolites identifies 62 loci and reveals novel systemic effects of LPA.	Metabolite levels (lipoprotein measures)	2,118 Erasmus Rucphen (founder/genetic isolate), 22,807 European ancestry individuals	NA	9p22.3	TTC39B	rs686030-A	0.87	2E-9	(Free cholesterol in very large HDL)	0.09	[0.07-0.11] unit increase	Affymetrix, Illumina, Perlegen [12133295] (imputed)	N
701	chr9	15305377	15305378	rs581080	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	9p22.3		rs581080-G	0.179607	4E-11		0.0347682	[0.024-0.045] unit decrease	NR [11722792] (imputed)	N
701	chr9	15305377	15305378	rs581080	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large HDL	115,082 European ancestry individuals	NA	9p22.3		rs581080-G	0.179607	1E-18		0.0461884	[0.036-0.056] unit decrease	NR [11722792] (imputed)	N
701	chr9	15305377	15305378	rs581080	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium LDL	115,082 European ancestry individuals	NA	9p22.3		rs581080-G	0.179607	1E-11		0.0355832	[0.025-0.046] unit decrease	NR [11722792] (imputed)	N
701	chr9	15305377	15305378	rs581080	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large LDL	115,082 European ancestry individuals	NA	9p22.3		rs581080-G	0.179607	7E-11		0.0343479	[0.024-0.045] unit decrease	NR [11722792] (imputed)	N
701	chr9	15305377	15305378	rs581080	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large HDL	115,082 European ancestry individuals	NA	9p22.3		rs581080-G	0.179607	2E-15		0.0407804	[0.031-0.051] unit decrease	NR [11722792] (imputed)	N
701	chr9	15305377	15305378	rs581080	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in LDL	115,082 European ancestry individuals	NA	9p22.3		rs581080-G	0.179607	2E-10		0.0335824	[0.023-0.044] unit decrease	NR [11722792] (imputed)	N
701	chr9	15305377	15305378	rs581080	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	9p22.3	NR	rs581080-C	NR	2E-17		0.0261	[0.02-0.032] unit increase	Affymetrix [9000000] (imputed)	N
701	chr9	15305377	15305378	rs581080	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	9p22.3	NR	rs581080-C	NR	2E-32		0.038	[0.032-0.044] unit increase	Affymetrix [9000000] (imputed)	N
701	chr9	15305377	15305378	rs581080	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	9p22.3	NR	rs581080-C	NR	4E-10		0.0193	[0.013-0.025] unit increase	Affymetrix [9000000] (imputed)	N
701	chr9	15305377	15305378	rs581080	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	9p22.3	NR	rs581080-C	NR	5E-44		0.0447	[0.038-0.051] unit increase	Affymetrix [9000000] (imputed)	N
701	chr9	15305377	15305378	rs581080	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	9p22.3	TTC39B	rs581080-G	0.180992	1E-11		0.0175184	[0.012-0.023] unit decrease	Affymetrix [NR] (imputed)	N
701	chr9	15305377	15305378	rs581080	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	9p22.3	TTC39B	rs581080-G	0.181009	7E-12		0.0185605	[0.013-0.024] unit decrease	Affymetrix [NR] (imputed)	N
701	chr9	15305377	15305378	rs581080	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	HDL cholesterol levels	up to 23,761 African ancestry individuals, 13,171 Asian ancestry individuals, up to 90,272 European ancestry individuals, 6,620 Hispanic individuals	NA	9p22.3		rs581080-C	0.8159	2E-9	(EA)	0.0099	[0.0066-0.0132] unit increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
701	chr9	15305377	15305378	rs581080	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9p22.3	NR	rs581080-G	NR	2E-12		0.033	unit decrease	Affymetrix [at least 7091467] (imputed)	N
701	chr9	15305377	15305378	rs581080	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9p22.3	NR	rs581080-G	0.182	6E-11	(EA)	0.033	unit decrease	Affymetrix [at least 7091467] (imputed)	N
701	chr9	15305377	15305378	rs581080	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Total cholesterol levels	32,576 East Asian ancestry individuals, 187,365 European ancestry individuals	10,855 Chinese ancestry individuals	9p22.3	TTC39B	rs581080-C	0.821	2E-12	(Trans-ethnic initial)	0.0377	[0.028-0.047] unit increase (EA Beta values)	Affymetrix, Illumina [up to 1900000] (imputed)	N
701	chr9	15305377	15305378	rs581080	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	HDL cholesterol levels	34,930 East Asian ancestry individuals, 187,167 European ancestry individuals	8,741 Chinese ancestry individuals	9p22.3	TTC39B	rs581080-C	0.821	1E-16	(Trans-ethnic initial)	0.0419	[0.033-0.051] unit increase (EA Beta values)	Affymetrix, Illumina [~ 1900000] (imputed)	N
701	chr9	15305377	15305378	rs581080	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	9p22.3	TTC39B	rs581080-G	0.21	1E-19		0.042	[NR] unit decrease	NR [NR] (imputed)	N
701	chr9	15305377	15305378	rs581080	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	9p22.3	TTC39B	rs581080-G	0.21	1E-13		0.038	[NR] unit decrease	NR [NR] (imputed)	N
701	chr9	15305377	15305378	rs581080	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	HDL cholesterol	99,900 European ancestry individuals	NA	9p22.3	TTC39B	rs581080-C	0.14	1E-13		0.72	[0.52-0.92] mg/dL decrease	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
701	chr9	15305377	15305378	rs581080	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	Cholesterol, total	100,184 European ancestry individuals	NA	9p22.3	TTC39B	rs581080-G	0.18	3E-9		1.57	[1.06-2.08] mg/dL decrease	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
701	chr9	15306291	15306292	rs10810374	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholines levels	115,006 European ancestry individuals	NA	9p22.3		rs10810374-A	0.751392	6E-12		0.031055	[0.022-0.04] unit decrease	NR [11722792] (imputed)	N
701	chr9	15306291	15306292	rs10810374	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Sphingomyelin levels	115,006 European ancestry individuals	NA	9p22.3		rs10810374-A	0.751392	2E-11		0.0301001	[0.021-0.039] unit decrease	NR [11722792] (imputed)	N
701	chr9	15306291	15306292	rs10810374	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Saturated fatty acid levels	115,006 European ancestry individuals	NA	9p22.3		rs10810374-A	0.751392	4E-8		0.025975	[0.017-0.035] unit decrease	NR [11722792] (imputed)	N
701	chr9	15306291	15306292	rs10810374	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphoglycerides levels	115,006 European ancestry individuals	NA	9p22.3		rs10810374-A	0.751392	2E-11		0.0304667	[0.022-0.039] unit decrease	NR [11722792] (imputed)	N
701	chr9	15306291	15306292	rs10810374	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphatidylcholine levels	115,006 European ancestry individuals	NA	9p22.3		rs10810374-A	0.751392	1E-11		0.0305232	[0.022-0.039] unit decrease	NR [11722792] (imputed)	N
701	chr9	15309927	15309928	rs2245641	22925353	Lee HJ	2012-08-25	J Affect Disord	A genome-wide association study of seasonal pattern mania identifies NF1A as a possible susceptibility gene for bipolar disorder.	Bipolar disorder	2,191 European ancestry cases, 1,434 European ancestry controls	NA	9p22.3	TTC39B	rs2245641-?	NR	2E-6	(SM vs. Control)	1.896	[NR]	Affymetrix [703012]	N
701	chr9	15315564	15315565	rs2804986	28322283	Chibnik LB	2017-03-21	Mol Psychiatry	Susceptibility to neurofibrillary tangles: role of the PTPRD locus and limited pleiotropy with other neuropathologies.	Diffuse plaques	909 European ancestry individuals	369 individuals	9p22.3		rs2804986-G	0.86	8E-6	(EA)			Affymetrix, Illumina [NR] (imputed)	N
702	chr9	15335913	15335914	rs16933006	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	9p22.3	RPL7P3	rs16933006-C	0.11	8E-8	(Light activity )	0.04	[NR] min/d increase	Illumina [899892]	N
702	chr9	15335913	15335914	rs16933006	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	9p22.3	RPL7P3	rs16933006-C	0.11	4E-6	(Sedentary activity )	0.03	[NR] %awake time increase	Illumina [899892]	N
702	chr9	15335913	15335914	rs16933006	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	9p22.3	RPL7P3	rs16933006-C	0.11	1E-6	(Light activity )	0.03	[NR] %awake time increase	Illumina [899892]	N
702	chr9	15347021	15347022	rs498404	32752121	Nedoszytko B	2020-07-31	Int J Mol Sci	Results from a Genome-Wide Association Study (GWAS) in Mastocytosis Reveal New Gene Polymorphisms Associated with WHO Subgroups.	Systemic mastocytosis	93 European ancestry cases, 5,606 European ancestry controls	NA	9p22.3	TTC398	rs498404-G	0.1365	3E-10		2.697	[2.38-3.02]	Illumina [281811]	N
702	chr9	15457776	15457777	rs9650682	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	9p22.3	NR	rs9650682-G	NR	9E-6		1.0638298	[NR]	Illumina [7158791] (imputed)	N
703	chr9	15511798	15511799	rs62571018	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	9p22.3	NR	rs62571018-?	NR	5E-14				Affymetrix [~ 8270000] (imputed)	N
703	chr9	15555457	15555458	rs7873152	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Beef consumption	335,576 European ancestry individuals	NA	9p22.3	CCDC171	rs7873152-?	NR	4E-10		0.015455	[0.011-0.02] unit increase	Affymetrix [25921788] (imputed)	N
703	chr9	15597192	15597193	rs9406517	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Meat-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	9p22.3	CCDC171	rs9406517-?	NR	5E-12	(female)	0.0229086	[0.016-0.029] unit increase	Affymetrix [25921788] (imputed)	N
704	chr9	15600097	15600098	rs150417221	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	9p22.3	NR	rs150417221-?	NR	5E-6		0.023694	[0.013-0.034] unit increase	Affymetrix [805426] (imputed)	N
704	chr9	15623474	15623475	rs6474933	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	9p22.3		rs6474933-G	NR	5E-12		0.0164	[0.012-0.021] unit decrease	Affymetrix, Illumina [20538307] (imputed)	N
704	chr9	15633005	15633006	rs378132	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Lamb consumption	335,576 European ancestry individuals	NA	9p22.3	CCDC171	rs378132-?	NR	1E-15		0.0195694	[0.015-0.024] unit increase	Affymetrix [25921788] (imputed)	N
704	chr9	15634325	15634326	rs4740619	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	9p22.3	NA	rs4740619-T	0.5436	3E-31		0.0189	[0.016-0.022] unit increase	NR [~ 27400000] (imputed)	N
704	chr9	15634325	15634326	rs4740619	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	9p22.3	NA	rs4740619-T	0.5436	3E-31		0.0189	[0.016-0.022] unit increase	NR [~ 27400000] (imputed)	N
704	chr9	15634325	15634326	rs4740619	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	9p22.3	NA	rs4740619-T	0.5436	3E-31		0.0189	[0.016-0.022] unit increase	NR [~ 27400000] (imputed)	N
704	chr9	15634325	15634326	rs4740619	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	9p22.3	NR	rs4740619-T	NR	4E-10		0.016	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
704	chr9	15634325	15634326	rs4740619	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	9p22.3	CCDC171	rs4740619-C	0.48	3E-10		0.016	[0.012-0.02] unit decrease	Illumina [6108953] (imputed)	N
704	chr9	15634325	15634326	rs4740619	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	9p22.3	NR	rs4740619-T	0.545371365417758	2E-10		0.017116887	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
704	chr9	15634325	15634326	rs4740619	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	9p22.3	C9orf93	rs4740619-T	0.542	5E-9	(EA)	0.018	[0.012-0.024] kg/m2 increase	Affymetrix, Illumina [2550021]	N
704	chr9	15634325	15634326	rs4740619	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	9p22.3	C9orf93	rs4740619-T	0.54	9E-7	(EA, men)	0.02	[0.012-0.028] kg/m2 increase	Affymetrix, Illumina [2550021]	N
704	chr9	15634325	15634326	rs4740619	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	9p22.3	C9orf93	rs4740619-T	0.54	6E-9		0.017	[0.011-0.023] kg/m2 increase	Affymetrix, Illumina [2550021]	N
704	chr9	15641977	15641978	rs1848582	32393786	Meddens SFW	2020-05-11	Mol Psychiatry	Genomic analysis of diet composition finds novel loci and associations with health and lifestyle.	Relative carbohydrate intake	175,253 European ancestry individuals	93,179 European ancestry individuals	9p22.3	NR	rs1848582-?		9E-8		0.015	[0.0091-0.0209] unit increase	Affymetrix [NR]	N
704	chr9	15645712	15645713	rs12340969	33563987	Tyrrell J	2021-02-09	Nat Commun	Genetic predictors of participation in optional components of UK Biobank.	Acceptance of an invitation to participate in a mental health questionnaire	146,074 European ancestry cases, 148,713 European ancestry controls	NA	9p22.3	NR	rs12340969-C	0.56	1E-8		0.97	[0.97, 0.98]	Affymetrix [39302896] (imputed)	N
704	chr9	15647347	15647348	rs9776097	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	9p22.3	NR	rs9776097-?	NR	9E-26				Affymetrix [~ 8270000] (imputed)	N
704	chr9	15670491	15670492	rs6474945	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	9p22.3	NA	rs6474945-T	0.4535	3E-9		0.0101	[0.0068-0.0134] unit decrease	NR [~ 27400000] (imputed)	N
704	chr9	15677290	15677291	rs12377817	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	9p22.3	NR	rs12377817-?	NR	9E-9				Affymetrix [~ 8270000] (imputed)	N
704	chr9	15677924	15677925	rs10125463	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Meat-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	9p22.3	CCDC171	rs10125463-?	NR	4E-17		0.0206152	[0.016-0.025] unit decrease	Affymetrix [25921788] (imputed)	N
704	chr9	15728615	15728616	rs72706690	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	9p22.3	NR	rs72706690-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
705	chr9	15757536	15757537	rs6474966	31263887	Adams MJ	2019-07-01	Int J Epidemiol	Factors associated with sharing e-mail information and mental health survey participation in large population cohorts.	Mental health study participation (completed survey)	122,647 British ancestry cases, 248,781 British ancestry controls	NA	9p22.3	CCDC171	rs6474966-A	0.46	3E-8		0.0060111	[0.0039-0.0081] unit increase	NR [16367095] (imputed)	N
705	chr9	15784630	15784631	rs1539172	29273807	Turcot V	2017-12-22	Nat Genet	Protein-altering variants associated with body mass index implicate pathways that control energy intake and expenditure in obesity.	Body mass index	up to 449,889 European ancestry individuals, up to 29,398 South Asian ancestry individuals, up to 27,610 African American individuals, up to 8,839 East Asian individuals, up to 10,772 Hispanic ancestry individuals	up to 196,766 European ancestry individuals	9p22.3	CCDC171	rs1539172-G	0.49560000000000004	1E-10		0.0111	[0.0078-0.0144] unit increase	Illumina [246328]	N
705	chr9	15788186	15788187	rs7853304	29594489	Apewokin S	2018-03-28	Support Care Cancer	Host genetic susceptibility to Clostridium difficile infections in patients undergoing autologous stem cell transplantation: a genome-wide association study.	Clostridium difficile infection in multiple myeloma	57 European ancestry cases, 589 European ancestry controls	NA	9p22.3	NR	rs7853304-?		3E-6				Illumina [892589]	N
705	chr9	15810887	15810888	rs117635839	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Trunk fat mass	3,399 whole genome sequenced individuals, 12,838 European ancestry individuals	10,667 European ancestry individuals	9p22.3	CCDC171	rs117635839-A	0.9872	6E-6		0.2631	[0.15-0.38] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
705	chr9	15810887	15810888	rs117635839	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body fat mass	3,399 whole genome sequenced individuals, 11,802 European ancestry individuals	10,670 European ancestry individuals	9p22.3	CCDC171	rs117635839-A	0.987	4E-7		0.2774	[0.17-0.39] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
705	chr9	15830505	15830506	rs4741545	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (father's age at death or father's attained age)	up to 699,000 European ancestry individuals	NA	9p22.3	NR	rs4741545-A		3E-6				Illumina [458865]	N
705	chr9	15852776	15852777	rs13294945	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	9p22.3		rs13294945-G	NR	5E-12		0.012	[0.0087-0.0153] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
705	chr9	15855544	15855545	rs11515071	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	9p22.3	NR	rs11515071-?	NR	3E-15		0.17383	[0.13-0.22] unit decrease	Affymetrix [7794483] (imputed)	N
705	chr9	15855544	15855545	rs11515071	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	9p22.3	NR	rs11515071-?	NR	2E-8	(male)	0.15097	[0.098-0.204] unit decrease	Affymetrix [7794483] (imputed)	N
705	chr9	15855544	15855545	rs11515071	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	9p22.3	NR	rs11515071-?	NR	2E-8	(female)	0.20173	[0.13-0.27] unit decrease	Affymetrix [7794483] (imputed)	N
706	chr9	15862076	15862077	rs10732335	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	9p22.3		rs10732335-C	NR	1E-8		0.0139	[0.0092-0.0186] unit decrease	Affymetrix, Illumina [20529698] (imputed)	N
706	chr9	15863890	15863893	rs111982622	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	9p22.3		rs111982622-A	NR	3E-8		0.0109	[0.007-0.0148] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
706	chr9	15866155	15866156	rs10810455	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	9p22.3	NR	rs10810455-G	NR	2E-9		0.0145	[0.0098-0.0192] unit decrease	Affymetrix [9000000] (imputed)	N
706	chr9	15866155	15866156	rs10810455	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	9p22.3	NR	rs10810455-C	0.558611	4E-11		0.0133214	[0.0094-0.0173] unit increase	NR [NR]	N
706	chr9	15868828	15868829	rs770199	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	9p22.3		rs770199-?	NR	3E-8				NR [~ 8900000] (imputed)	N
706	chr9	15880554	15880555	rs10756713	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	9p22.3		rs10756713-A	0.56	2E-31				NR [NR] (imputed)	N
706	chr9	15880554	15880555	rs10756713	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	9p22.3		rs10756713-A	0.56	1E-37		0.019	% increase	NR [NR] (imputed)	N
706	chr9	15885040	15885041	rs10756714	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	9p22.3	NR	rs10756714-G	0.4444	3E-15		0.01968136	[0.015-0.025] unit decrease	Affymetrix [10549349] (imputed)	N
706	chr9	15888705	15888706	rs770214	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	9p22.3	NR	rs770214-G	NR	4E-8		0.023	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
706	chr9	15895805	15895806	rs1169479	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	9p22.3	CCDC171	rs1169479-T	0.564	3E-9		0.0071	[0.0047-0.0095] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
706	chr9	15898227	15898228	rs1341729	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	9p22.3	C9orf92	rs1341729-T	0.2962	4E-8		0.01170349	[0.0075-0.0159] unit increase	Illumina [9339358] (imputed)	N
706	chr9	15900506	15900506	rs772984386	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	9p22.3	NR	rs772984386-A	0.596544	8E-9		0.0419501	[0.028-0.056] unit increase	Affymetrix [17914406] (imputed)	N
706	chr9	15901874	15901875	rs1341732	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	9p22.3		rs1341732-G	0.45	6E-9		5.81	z score increase	Affymetrix [9061022] (imputed)	N
706	chr9	15901874	15901875	rs1341732	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	9p22.3	CCDC171	rs1341732-A	0.5814	7E-14		0.0144	[0.011-0.018] unit decrease	Affymetrix [18391927] (imputed)	N
706	chr9	15906775	15906776	rs10810471	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	9p22.3	NR	rs10810471-A	0.4198	1E-9				NR [9056863] (imputed)	N
706	chr9	15910043	15910044	rs13292699	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		9p22.3	CCDC171	rs13292699-A	0.566335	2E-19		0.0125361	[0.0098-0.0153] unit increase	Affymetrix [12370749]	N
706	chr9	15910043	15910044	rs13292699	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	9p22.3		rs13292699-?	NR	2E-25				NR [~ 8900000] (imputed)	N
706	chr9	15921621	15921622	rs4741548	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	9p22.3		rs4741548-A	0.43	1E-10		6.47	z score increase	Affymetrix [9061022] (imputed)	N
706	chr9	15952304	15952305	rs78223574	31417091	Kou I	2019-08-15	Nat Commun	Genome-wide association study identifies 14 previously unreported susceptibility loci for adolescent idiopathic scoliosis in Japanese.	Adolescent idiopathic scoliosis	5,327 Japanese ancestry cases, 73,884 Japanese ancestry controls	NA	9p22.3	NR	rs78223574-A	0.89	4E-6		1.18	[1.10-1.27]	Illumina [9332516] (imputed)	N
706	chr9	15973287	15973288	rs10756728	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	9p22.3		rs10756728-?	NR	5E-11				NR [~ 8900000] (imputed)	N
706	chr9	15975068	15975069	rs10756730	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (father's age at death or father's attained age)	up to 699,000 European ancestry individuals	NA	9p22.3	NR	rs10756730-A		4E-6				Illumina [458865]	N
706	chr9	15986715	15986716	rs1927702	19851299	Johansson A	2009-10-22	Obesity (Silver Spring)	Linkage and genome-wide association analysis of obesity-related phenotypes: association of weight with the MGAT1 gene.	Body mass index	1,079 South Tyrolean individuals, 790 Dutch founder individuals, 2,060 European ancestry individuals	NA	9p22.3	NR	rs1927702-G	0.42	6E-6	(females)	0.08	[NR] kg increase	Illumina [318237]	N
707	chr9	16000234	16000235	rs79156074	23319000	Luykx JJ	2013-01-15	Mol Psychiatry	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (5-HIAA/ MHPG Ratio)	up to 398 European ancestry individuals	NA	9p22.3	intergenic	rs79156074-T		2E-6		0.2824	unit increase	Illumina [5767231] (imputed)	N
707	chr9	16016877	16016878	rs3008713	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	9p22.3	NR	rs3008713-?	NR	5E-11				Affymetrix [~ 8270000] (imputed)	N
707	chr9	16030125	16030126	rs4740631	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	9p22.3		rs4740631-?	NR	2E-11				NR [~ 8900000] (imputed)	N
707	chr9	16034537	16034538	rs3008706	20639394	Kang TW	2010-07-16	Hum Mol Genet	Genome-wide association of serum bilirubin levels in Korean population.	Bilirubin levels	8,841 Korean ancestry individuals	1,096 Korean ancestry individuals	9p22.3	intergenic	rs3008706-?	0.035	5E-7		0.063	[NR] bilirubin level increase	Affymetrix [1227049] (imputed)	N
707	chr9	16040662	16040663	rs3008705	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	9p22.3	NR	rs3008705-C	0.459199	1E-9		0.0415838	[0.028-0.055] unit decrease	Affymetrix [17914406] (imputed)	N
707	chr9	16044441	16044442	rs117258259	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	9p22.3	NR	rs117258259-?	NR	5E-8				Affymetrix [~ 8270000] (imputed)	N
707	chr9	16044530	16044530	rs201684319	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Kidney volume	32,860 European ancestry individuals	NA	9p22.3	C9orf92	rs201684319-?	NR	8E-11		0.0422	NR L decrease	Affymetrix [9390170] (imputed)	N
707	chr9	16048247	16048248	rs10733306	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	9p22.3		rs10733306-C	0.539972	4E-8		0.0220496	[0.014-0.03] unit decrease	NR [11722792] (imputed)	N
707	chr9	16048247	16048248	rs10733306	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of linoleic acid to total fatty acids	115,006 European ancestry individuals	NA	9p22.3		rs10733306-C	0.539972	4E-10		0.0251941	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
707	chr9	16078187	16078188	rs60621229	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid vs negative)	9,913 European ancestry cases, 85,072 European ancestry controls, 2,553 Hispanic or Latin American cases, 13,086 Hispanic or Latin American controls, 506 Black or African American cases, 3,110 Black or African American controls	NA	9p22.3		rs60621229-?	NR	3E-6		0.32588646	[0.19-0.46] unit decrease	Illumina [9939936] (imputed)	N
707	chr9	16081853	16081854	rs74889772	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking status (current vs never)	40,456 European ancestry current smokers, 13,511 African American current smokers, 2,920 Hispanic current smokers, 59,056 European ancestry mostly never smokers, 17,751 African American mostly never smokers, 7,195 Hispanic mostly never smokers	NA	9p22.3	CCDC171, C9orf92	rs74889772-A		3E-8		1.072	[NR]	Affymetrix [~ 79000000] (imputed)	N
707	chr9	16099816	16099817	rs117746782	33824429	Fjukstad KK	2021-04-06	Pharmacogenomics J	Genetic variants associated with cardiometabolic abnormalities during treatment with selective serotonin reuptake inhibitors: a genome-wide association study.	Triglyceride levels x SSRI levels (escitalopram or citalopram) interaction in schizophrenia or bipolar disorder	181 European ancestry individuals	NA	9p22.3	CCDC171	rs117746782-C	NR	7E-6		12.199	[7.08-17.31] unit increase	Illumina [NR] (imputed)	N
707	chr9	16102758	16102759	rs62552211	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	9p22.3	NR	rs62552211-C	0.171	4E-8		0.00796658	[0.0051-0.0108] unit decrease	NR [9732723] (imputed)	N
707	chr9	16103029	16103030	rs10962279	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	9p22.3	CCDC171	rs10962279-T	0.781672	2E-9		0.0101915	[0.0069-0.0135] unit decrease	Affymetrix [12370749]	N
707	chr9	16105960	16105961	rs11795150	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9p22.3		rs11795150-?	NR	8E-10				NR [~ 8900000] (imputed)	N
708	chr9	16135141	16135142	rs12350582	30823506	Hong EP	2019-02-25	J Clin Med	Genomic Variations in Susceptibility to Intracranial Aneurysm in the Korean Population.	Intracranial aneurysm	250 Korean ancestry cases, 296 Korean ancestry controls	NA	9p22.3	C9orf92	rs12350582-G	0.18	2E-8		2.43	[1.79-3.31]	Affymetrix [508192]	N
708	chr9	16161232	16161233	rs4961664	30636644	Nazarian A	2019-01-12	Alzheimers Res Ther	Genome-wide analysis of genetic predisposition to Alzheimer's disease and related sex disparities.	Alzheimer's disease	952 European ancestry male cases, 1,789 European ancestry female cases, 6,337 European ancestry male controls, 8,402 European ancestry female controls	NA	9p22.3	C9orf92	rs4961664-?	NR	4E-6		1.2335871		Affymetrix, Illumina [2928658] (imputed)	N
708	chr9	16214339	16214340	rs9298749	32769997	Zhou W	2020-08-07	Nat Commun	GWAS of thyroid stimulating hormone highlights pleiotropic effects and inverse association with thyroid cancer.	Thyroid stimulating hormone levels	119,715 European ancestry individuals	NA	9p22.3	C9orf92	rs9298749-C	0.394161871013389	6E-11		0.0313	[0.022-0.041] SD increase	Illumina [22400000] (imputed)	N
708	chr9	16214339	16214340	rs9298749	30367059	Teumer A	2018-10-26	Nat Commun	Genome-wide analyses identify a role for SLC17A4 and AADAT in thyroid hormone regulation.	Thyroid stimulating hormone levels	54,288 European ancestry individuals	up to 22,383 European ancestry individuals	9p22.3	C9orf92	rs9298749-A	0.59	2E-10		0.038	[0.026-0.05] unit decrease	Affymetrix, Illumina [8048941] (imputed)	N
708	chr9	16230897	16230898	rs12686718	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9p22.3	NR	rs12686718-G	0.03484	1E-8	(SDS)	0.04937	NR unit increase	Illumina [1671387] (imputed)	N
708	chr9	16252806	16252807	rs12683780	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	9p22.3	NR	rs12683780-A	0.669282	3E-13		0.0104924	[0.0077-0.0132] unit increase	Affymetrix [16578495] (imputed)	N
708	chr9	16252806	16252807	rs12683780	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	9p22.3	NR	rs12683780-A	0.66843	8E-26		0.0308941	[0.025-0.037] unit increase	Affymetrix [16580851] (imputed)	N
708	chr9	16252806	16252807	rs12683780	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	9p22.3	NR	rs12683780-A	0.668616	5E-12		0.0179481	[0.013-0.023] unit increase	Affymetrix [16585745] (imputed)	N
709	chr9	16253903	16253904	rs7027156	31271701	Thibord F	2019-07-04	J Thromb Haemost	A Genome Wide Association Study on plasma FV levels identified PLXDC2 as a new modifier of the coagulation process.	Plasma factor V levels in venous thrombosis (conditioned on rs6027)	510 European ancestry individuals	1,156 European ancestry individuals	9p22.3	C9orf92	rs7027156-?	NR	5E-6		0.071	[0.042-0.1] unit increase	NR [6264382] (imputed)	N
709	chr9	16286889	16286890	rs13287547	26220383	Jang HW	2015-06-02	Epilepsy Res	GWAS identifies two susceptibility loci for lamotrigine-induced skin rash in patients with epilepsy.	Epilepsy and lamotrigine-induced maculopapular eruptions	34 Korean ancestry cases, 1,080 Korean ancestry healthy controls	NA	9p22.3	C9orf92, BNC2	rs13287547-?	0.04	7E-7		4.8	[NR]	Affymetrix [4893794] (imputed)	N
709	chr9	16288423	16288424	rs7875024	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	9p22.3	Intergenic	rs7875024-A	0.663	5E-6		0.044	NR unit decrease	Illumina [NR] (imputed)	N
709	chr9	16289427	16289428	rs6475025	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	9p22.3	Intergenic	rs6475025-T	0.664	4E-6		0.044	NR unit increase	Illumina [NR] (imputed)	N
709	chr9	16347926	16347927	rs4961705	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	9p22.3	BNC2	rs4961705-G	0.652843	4E-9		0.012977	[0.0087-0.0173] unit decrease	NR [16516521] (imputed)	N
709	chr9	16347926	16347927	rs4961705	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	9p22.3	BNC2	rs4961705-C	0.3494	4E-8		0.011193392	[0.0072-0.0152] unit decrease	Illumina [9339358] (imputed)	N
709	chr9	16350312	16350313	rs113277183	32141789	Theriault S	2019-10-15	Circ Genom Precis Med	Genetic Association Analyses Highlight IL6, ALPL, and NAV1 As 3 New Susceptibility Genes Underlying Calcific Aortic Valve Stenosis.	Calcific aortic valve stenosis	5,115 European ancestry cases, 354,072 European ancestry controls	NA	9p22.3	C9orf92-BNC2	rs113277183-C	0.016	9E-7		1.71	[1.5-1.92]	Affymetrix, Illumina [8000000] (imputed)	N
709	chr9	16360888	16360889	rs4961485	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	9p22.3	NR	rs4961485-T	0.933443	6E-10		0.0157393	[0.011-0.021] unit increase	Affymetrix [16578495] (imputed)	N
709	chr9	16360888	16360889	rs4961485	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	9p22.3	NR	rs4961485-T	0.933562	9E-14		0.0391398	[0.028-0.05] unit increase	Affymetrix [16580851] (imputed)	N
709	chr9	16368731	16368732	rs7864648	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	9p22.3	BNC2	rs7864648-T	0.32	2E-8		0.022	[NR] unit increase	Affymetrix, Illumina [2834208] (imputed)	N
710	chr9	16385131	16385132	rs9406636	23934736	Yu B	2013-08-11	Genet Epidemiol	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels (Dihydroxy docosatrienoic acid)	1,260 African American individuals	NA	9p22.3	BNC2	rs9406636-A		9E-7		0.09	[0.05-0.13] unit decrease	Affymetrix [~ 2500000] (imputed)	N
710	chr9	16397287	16397288	rs78863817	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid vs negative)	9,913 European ancestry cases, 85,072 European ancestry controls, 2,553 Hispanic or Latin American cases, 13,086 Hispanic or Latin American controls, 506 Black or African American cases, 3,110 Black or African American controls	NA	9p22.3		rs78863817-?	NR	3E-6		0.10696362	[0.063-0.151] unit decrease	Illumina [9939936] (imputed)	N
710	chr9	16408825	16408826	rs717267	28877031	Zhang G	2017-09-07	N Engl J Med	Genetic Associations with Gestational Duration and Spontaneous Preterm Birth.	Gestational age at birth (maternal effect)	43,568 European ancestry mothers	8,643 European ancestry mothers	9p22.3	BNC2, C9orf92	rs717267-A	0.399	5E-7		0.637	[NR] unit decrease	Illumina [15635593] (imputed)	N
710	chr9	16414505	16414506	rs76780579	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	9p22.3	intergenic	rs76780579-A	0.001	1E-6		34.08	[3.52-329.69]	Illumina [1556551]	N
710	chr9	16414755	16414756	rs16934621	30237584	El Rouby N	2018-09-20	Pharmacogenomics J	Genome-wide association analysis of common genetic variants of resistant hypertension.	Resistant hypertension	297 European ancestry cases, 226 Hispanic cases, 623 European ancestry controls, 633 Hispanic controls	1,946 European ancestry cases, 471 European ancestry controls	9p22.3	BNC2	rs16934621-A	0.08	5E-6		1.43	[NR]	Illumina [NR]	N
710	chr9	16416994	16416995	rs1999032	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	9p22.3	NR	rs1999032-C	NR	2E-9		0.0145	[0.0098-0.0192] unit decrease	Affymetrix [9000000] (imputed)	N
710	chr9	16428624	16428625	rs6475052	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	9p22.3	BNC2	rs6475052-T	0.411	6E-11		0.0117	[0.0082-0.0152] unit increase	Affymetrix [18391927] (imputed)	N
710	chr9	16439782	16439783	rs1927625	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	9p22.3		rs1927625-?	NR	1E-16		0.032157	[0.024-0.04] unit increase	Affymetrix [20259828] (imputed)	N
710	chr9	16452316	16452317	rs188372195	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	9p22.3	BNC2	rs188372195-A	0.9971	2E-6		0.4591	[0.27-0.65] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
710	chr9	16476970	16476971	rs7874842	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	9p22.3	NR	rs7874842-?	NR	8E-6		0.007939	[0.0045-0.0114] unit decrease	Affymetrix [805426] (imputed)	N
710	chr9	16489759	16489760	rs141457510	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Non-melanoma skin cancer	5,912 European ancestry cases, 181,740 European ancestry controls		9p22.3	NR	rs141457510-C	NR	2E-6		1.3428588	[1.19-1.51]	Affymetrix [5734850] (imputed)	N
710	chr9	16492515	16492516	rs12056994	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	9p22.3	NR	rs12056994-C	0.1602	1E-8				NR [9056863] (imputed)	N
710	chr9	16503544	16503545	rs10962461	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mode of anisotropy)	17,706 European ancestry individuals	NA	9p22.3	NR	rs10962461-?		3E-8	(Anterior limb of internal capsule)			NR [8955960] (imputed)	N
710	chr9	16512747	16512748	rs10124550	23934736	Yu B	2013-08-11	Genet Epidemiol	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels (Pyroglutamine)	1,260 African American individuals	NA	9p22.3	BNC2	rs10124550-A		7E-7		0.16	[0.09-0.21] unit increase	Affymetrix [~ 2500000] (imputed)	N
711	chr9	16517952	16517953	rs12115663	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	9p22.3		rs12115663-?	NR	7E-14				NR [~ 8900000] (imputed)	N
711	chr9	16525631	16525632	rs7031602	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	9p22.3		rs7031602-?	NR	2E-16		0.789145	[0.73-0.85]	NR [685523]	N
711	chr9	16529173	16529174	rs4961722	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	9p22.3	NR	rs4961722-C	0.4139	2E-11				NR [9056863] (imputed)	N
711	chr9	16529553	16529554	rs10962474	33549134	Adolphe C	2021-02-06	Genome Med	Genetic and functional interaction network analysis reveals global enrichment of regulatory T cell genes influencing basal cell carcinoma susceptibility.	Basal cell carcinoma	17,416 European ancestry cases, 375,455 European ancestry controls	NA	9p22.3	BNC2	rs10962474-T	0.0530924	1E-21		0.25755212	[0.2-0.31] unit decrease	Affymetrix [7260263] (imputed)	N
711	chr9	16529553	16529554	rs10962474	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Keratinocyte cancer (MTAG)	at least 18,538 European ancestry cases, at least 340,302 European ancestry controls	NA	9p22.3	RP11-183I6.2	rs10962474-C	0.945525	3E-18		1.1904762	[1.14-1.23]	Affymetrix [7600000] (imputed)	N
711	chr9	16542757	16542758	rs113477878	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	9p22.3	BNC2	rs113477878-C	0.952418	4E-10		0.0275108	[0.019-0.036] unit increase	NR [13737936] (imputed)	N
711	chr9	16563122	16563123	rs10756762	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	9p22.3	BNC2	rs10756762-T	0.58884	2E-19		0.0174498	[0.014-0.021] unit decrease	NR [13737936] (imputed)	N
711	chr9	16563122	16563123	rs10756762	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	9p22.3		rs10756762-?	NR	6E-27				NR [~ 8900000] (imputed)	N
711	chr9	16563122	16563123	rs10756762	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	9p22.3		rs10756762-?	NR	3E-24		0.0222445	[0.018-0.026] unit decrease	Affymetrix [20259828] (imputed)	N
711	chr9	16595648	16595649	rs10116857	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	9p22.3		rs10116857-?	NR	7E-8				NR [~ 8900000] (imputed)	N
711	chr9	16611691	16611692	rs1337391	25130324	Cai DC	2014-08-29	Genes Brain Behav	A genome-wide search for quantitative trait loci affecting the cortical surface area and thickness of Heschl's gyrus.	Heschl's gyrus morphology	1,778 European ancestry individuals, 1,276 individuals	NA	9p22.2	BNC2	rs1337391-A	0.08	9E-6	(Right HG area)	14.38	unit decrease	Affymetrix, Illumina [4103035] (imputed)	N
711	chr9	16625060	16625061	rs10810579	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	9p22.2		rs10810579-C	0.37	2E-9		5.99	z score increase	Affymetrix [9061022] (imputed)	N
711	chr9	16637264	16637265	rs11790341	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	9p22.2		rs11790341-?	NR	9E-9				NR [~ 8900000] (imputed)	N
711	chr9	16638459	16638460	rs2050617	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	9p22.2	NR	rs2050617-?	NR	3E-7				Illumina [at least 7383741] (imputed)	N
712	chr9	16669911	16669912	rs1337395	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	9p22.2		rs1337395-?	NR	1E-6		0.937753	[0.91-0.96]	NR [685523]	N
712	chr9	16676600	16676601	rs4961729	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	9p22.2	BNC2	rs4961729-A	0.7829	2E-8		0.013137849	[0.0085-0.0178] unit increase	Illumina [9339358] (imputed)	N
712	chr9	16681992	16681993	rs3904778	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	9p22.2		rs3904778-C	0.23	5E-16		8.1	z score increase	Affymetrix [9061022] (imputed)	N
712	chr9	16681992	16681993	rs3904778	26211971	Ogura Y	2015-07-23	Am J Hum Genet	A Functional SNP in BNC2 Is Associated with Adolescent Idiopathic Scoliosis.	Adolescent idiopathic scoliosis	2,109 Japanese ancestry cases, 11,140 Japanese ancestry controls	2,223 East Asian ancestry cases, 4,724 East Asian ancestry controls	9p22.2	BNC2	rs3904778-G	0.414	5E-8	(Japanese)	1.21	[1.14-1.28]	Illumina [4420789] (imputed)	N
712	chr9	16681992	16681993	rs3904778	26211971	Ogura Y	2015-07-23	Am J Hum Genet	A Functional SNP in BNC2 Is Associated with Adolescent Idiopathic Scoliosis.	Adolescent idiopathic scoliosis	2,109 Japanese ancestry cases, 11,140 Japanese ancestry controls	2,223 East Asian ancestry cases, 4,724 East Asian ancestry controls	9p22.2	BNC2	rs3904778-G	0.414	2E-13		1.21	[1.15-1.27]	Illumina [4420789] (imputed)	N
712	chr9	16686326	16686327	rs4961733	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	9p22.2	BNC2	rs4961733-G	0.193461	6E-23		0.0231928	[0.019-0.028] unit decrease	NR [13737936] (imputed)	N
712	chr9	16686326	16686327	rs4961733	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	9p22.2		rs4961733-?	NR	3E-31				NR [~ 8900000] (imputed)	N
712	chr9	16686326	16686327	rs4961733	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	9p22.2		rs4961733-?	NR	3E-29		0.0290091	[0.024-0.034] unit decrease	Affymetrix [20259828] (imputed)	N
712	chr9	16690611	16690612	rs7028900	31417091	Kou I	2019-08-15	Nat Commun	Genome-wide association study identifies 14 previously unreported susceptibility loci for adolescent idiopathic scoliosis in Japanese.	Adolescent idiopathic scoliosis	5,327 Japanese ancestry cases, 73,884 Japanese ancestry controls	NA	9p22.2	BNC2	rs7028900-C	0.42	2E-17		1.2	[1.15-1.25]	Illumina [9332516] (imputed)	N
712	chr9	16690611	16690612	rs7028900	31417091	Kou I	2019-08-15	Nat Commun	Genome-wide association study identifies 14 previously unreported susceptibility loci for adolescent idiopathic scoliosis in Japanese.	Adolescent idiopathic scoliosis	5,004 Japanese ancestry female cases, 33,679 Japanese ancestry female controls	NA	9p22.2	BNC2	rs7028900-C	0.421361	2E-13		1.19	[1.13-1.24]	Illumina [9332516] (imputed)	N
712	chr9	16692103	16692104	rs12335424	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9p22.2		rs12335424-?	NR	2E-21				NR [~ 8900000] (imputed)	N
712	chr9	16700836	16700837	rs10756785	30395268	Khanshour AM	2018-11-01	Hum Mol Genet	Genome-wide meta-analysis and replication studies in multiple ethnicities identify novel adolescent idiopathic scoliosis susceptibility loci.	Adolescent idiopathic scoliosis	2,295 East Asian ancestry cases, 11,084 East Asian ancestry controls, 1,503 European ancestry cases, 18,594 European ancestry controls	2,737 East Asian ancestry cases, 56,815 East Asian ancestry controls, 1,421 European ancestry cases, 1,966 European ancestry controls	9p22.2	BNC2	rs10756785-?		7E-10		1.21	[1.14-1.28]	Affymetrix, Illumina [3493832] (imputed)	N
712	chr9	16703380	16703381	rs3850445	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	9p22.2	BNC2	rs3850445-A	0.3838	2E-8		0.0207	[0.013-0.028] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
712	chr9	16710869	16710870	rs1538101	29855589	Chernus J	2018-05-31	Sci Rep	GWAS reveals loci associated with velopharyngeal dysfunction.	Velopharyngeal dysfunction	54 Hispanic or Latin American and unknown ancestry cases, 922 Hispanic or Latin American and unknown ancestry controls	NA	9p22.2	NR	rs1538101-?	NR	3E-7		0.12483839	[NR] unit decrease	Illumina [at least 269494] (imputed)	N
712	chr9	16712246	16712247	rs10962547	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	9p22.2	NR	rs10962547-?	NR	4E-19				Affymetrix [~ 8270000] (imputed)	N
712	chr9	16712246	16712247	rs10962547	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	9p22.2	NR	rs10962547-A	0.1694	1E-12		0.023568679	[0.017-0.03] unit increase	Affymetrix [10549349] (imputed)	N
712	chr9	16712246	16712247	rs10962547	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	9p22.2		rs10962547-?	NR	3E-19				NR [~ 8900000] (imputed)	N
712	chr9	16713665	16713666	rs10738451	33549134	Adolphe C	2021-02-06	Genome Med	Genetic and functional interaction network analysis reveals global enrichment of regulatory T cell genes influencing basal cell carcinoma susceptibility.	Basal cell carcinoma	17,416 European ancestry cases, 375,455 European ancestry controls	NA	9p22.2	BNC2	rs10738451-C	0.280189	8E-9		0.07076444	[0.047-0.095] unit decrease	Affymetrix [7260263] (imputed)	N
712	chr9	16715825	16715826	rs1330303	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	9p22.2	NR	rs1330303-C	0.6461	5E-10		1.0396092	[1.03-1.05]	Affymetrix [15688218] (imputed)	N
712	chr9	16721066	16721067	rs4961737	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	9p22.2		rs4961737-A	0.524513	2E-16		0.0165144	[0.013-0.02] unit increase	Illumina [13479295] (imputed)	N
712	chr9	16721066	16721067	rs4961737	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	9p22.2	BNC2	rs4961737-?	NR	7E-18		0.024524722	[0.019-0.03] unit increase	Illumina [27896057] (imputed)	N
712	chr9	16721920	16721925	rs146494938	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	9p22.2		rs146494938-G	NR	1E-21		0.0223	[0.018-0.027] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
712	chr9	16723741	16723742	rs10962552	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first birth	542,901 European ancestry individuals	NA	9p22.2	BNC2	rs10962552-T	0.1693	3E-8		0.0707	[0.046-0.096] unit decrease	NR [9744772] (imputed)	N
712	chr9	16724054	16724055	rs73646205	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	9p22.2	NA	rs73646205-A	0.1676	2E-18		0.0225	[0.017-0.028] unit increase	NR [~ 27400000] (imputed)	N
712	chr9	16726118	16726119	rs10756792	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	9p22.2		rs10756792-T	NR	2E-28		0.0154	[0.013-0.018] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
712	chr9	16726225	16726226	rs10756794	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	9p22.2		rs10756794-G	0.257624	2E-8		0.0233717	[0.015-0.032] unit decrease	NR [11722792] (imputed)	N
712	chr9	16728531	16728532	rs1411432	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		9p22.2	BNC2	rs1411432-A	0.813835	2E-12		0.0124381	[0.009-0.0159] unit decrease	Affymetrix [12370749]	N
712	chr9	16728531	16728532	rs1411432	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	9p22.2	BNC2	rs1411432-A	0.813585	2E-8		0.0138488	[0.009-0.0187] unit increase	Affymetrix [NR] (imputed)	N
712	chr9	16728531	16728532	rs1411432	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	9p22.2	NA	rs1411432-A	0.8136	3E-17		0.0207	[0.016-0.026] unit decrease	NR [~ 27400000] (imputed)	N
712	chr9	16728720	16728721	rs1411431	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	9p22.2	NA	rs1411431-A	0.1598	1E-18		0.0229	[0.018-0.028] unit increase	NR [~ 27400000] (imputed)	N
712	chr9	16730973	16730974	rs10756796	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	9p22.2		rs10756796-?	NR	3E-9				NR [~ 8900000] (imputed)	N
712	chr9	16732734	16732735	rs7036453	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	9p22.2		rs7036453-?	NR	5E-12		0.0387295	[0.028-0.05] unit increase	Affymetrix [20259828] (imputed)	N
712	chr9	16732734	16732735	rs7036453	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	9p22.2	BNC2	rs7036453-C	0.963027	5E-10		0.0573106	[0.04-0.075] unit increase	NR [17166351] (imputed)	N
712	chr9	16732734	16732735	rs7036453	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	9p22.2	BNC2	rs7036453-C	0.962865	9E-6	(men)	0.0645695	[0.038-0.091] unit increase	NR [17166351] (imputed)	N
712	chr9	16737023	16737024	rs4961741	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	9p22.2		rs4961741-G	0.828	5E-10		0.01	[0.0061-0.0139] unit decrease	NR [NR] (imputed)	N
712	chr9	16738311	16738312	rs7858712	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	9p22.2	BNC2	rs7858712-A	0.0856	1E-24		0.0347	[0.028-0.041] unit decrease	Affymetrix [18391927] (imputed)	N
712	chr9	16739762	16739763	rs10756798	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	9p22.2		rs10756798-C	0.35	5E-13				NR [NR] (imputed)	N
712	chr9	16739762	16739763	rs10756798	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	9p22.2		rs10756798-C	0.35	1E-18		0.014	% increase	NR [NR] (imputed)	N
712	chr9	16740854	16740855	rs10810603	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	9p22.2		rs10810603-A	NR	1E-11		0.0158	[0.011-0.02] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
712	chr9	16740854	16740855	rs10810603	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	9p22.2		rs10810603-A	NR	6E-9		0.0149	[0.0098-0.02] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
712	chr9	16740854	16740855	rs10810603	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	9p22.2	NR	rs10810603-A	0.202	3E-9		0.00800154	[0.0054-0.0106] unit increase	NR [9732723] (imputed)	N
712	chr9	16740854	16740855	rs10810603	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	9p22.2		rs10810603-?	NR	2E-8				NR [~ 8900000] (imputed)	N
712	chr9	16753148	16753149	rs2039189	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Inguinal hernia	16,725 European ancestry cases, 428,356 European ancestry controls, 1,664 East Asian ancestry cases, 177,062 East Asian ancestry controls	NA	9p22.2		rs2039189-A	NR	2E-11		0.1433	[0.1-0.19] unit decrease	Affymetrix, Illumina [25841416] (imputed)	N
712	chr9	16758106	16758107	rs10962568	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking initiation (ever regular vs never regular)	up to 433,216 European ancestry individuals	NA	9p22.2	BNC2	rs10962568-C	0.149	5E-10		0.0199	[0.014-0.026] unit increase	Illumina [~ 250000] (imputed)	N
713	chr9	16786783	16786784	rs12377846	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (family Peptostreptococcaceae id.2042)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	9p22.2		rs12377846-C	NR	7E-7		4.9542084	z score decrease	Affymetrix, Illumina [NR] (imputed)	N
713	chr9	16791742	16791743	rs10962594	31791832	Koks S	2019-11-12	J Arthroplasty	The Genetic Variations Associated With Time to Aseptic Loosening After Total Joint Arthroplasty.	Aseptic loosening in total joint arthroplasty	97 cases, 289 controls	NA	9p22.2	BNC2	rs10962594-G	0.21	7E-6		2.74	[NR]	Illumina [up to 600000]	N
713	chr9	16795240	16795241	rs10810635	29895819	Endo C	2018-06-12	Sci Rep	Genome-wide association study in Japanese females identifies fifteen novel skin-related trait associations.	Freckles	7,148 Japanese ancestry female cases, 4,034 Japanese ancestry female controls	NA	9p22.2	BNC2, RP11-62F24.2	rs10810635-C	0.53	2E-22		1.3157895	[1.25-1.39]	Affymetrix [536506]	N
713	chr9	16795285	16795286	rs10962599	32041948	Sarin KY	2020-02-10	Nat Commun	Genome-wide meta-analysis identifies eight new susceptibility loci for cutaneous squamous cell carcinoma.	Cutaneous squamous cell carcinoma	19,149 European ancestry cases, 680,049 European ancestry controls	NA	9p22.2	NR	rs10962599-?	0.251	1E-10				NR [13607369] (imputed)	N
713	chr9	16795285	16795286	rs10962599	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	9p22.2	BNC2	rs10962599-?	NR	5E-22		1.0936134	NR	Affymetrix [9154080] (imputed)	N
713	chr9	16795789	16795790	rs16935073	34648798	Seo JY	2021-10-11	J Invest Dermatol	Genome-wide association study identifies multiple genetic loci for skin color in Korean women.	Facial skin colour (CIELAB index b* value)	11,079 Korean ancestry individuals	5,940 Korean ancestry individuals	9p22.2	BNC2	rs16935073-C	0.434	1E-16		0.23	unit decrease	Illumina [5032876] (imputed)	N
713	chr9	16795789	16795790	rs16935073	34648798	Seo JY	2021-10-11	J Invest Dermatol	Genome-wide association study identifies multiple genetic loci for skin color in Korean women.	Facial skin colour (CIELAB index L* value)	11,079 Korean ancestry individuals	5,940 Korean ancestry individuals	9p22.2	BNC2	rs16935073-C	0.434	6E-14		0.29	unit increase	Illumina [5032876] (imputed)	N
713	chr9	16795789	16795790	rs16935073	32835660	Shin JG	2020-08-21	J Invest Dermatol	Genome-wide association analysis of 17,019 Korean women identifies variants associated with facial pigmented spots.	Facial pigmentation measurement (polar light)	11,079 Korean women	5,940 Korean women	9p22.2	BNC2	rs16935073-C	0.434	9E-32		0.99	unit increase	Illumina [366864] (imputed)	N
713	chr9	16795789	16795790	rs16935073	32835660	Shin JG	2020-08-21	J Invest Dermatol	Genome-wide association analysis of 17,019 Korean women identifies variants associated with facial pigmented spots.	Facial pigmentation measurement (UV light)	11,079 Korean women	5,940 Korean women	9p22.2	BNC2	rs16935073-C	0.434	2E-46		1.58	unit increase	Illumina [366864] (imputed)	N
713	chr9	16800788	16800789	rs2026805	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Keratinocyte cancer (MTAG)	at least 18,538 European ancestry cases, at least 340,302 European ancestry controls	NA	9p22.2	RP11-335H2.2	rs2026805-A	0.758592	1E-16		1.0869565	[1.06-1.11]	Affymetrix [7600000] (imputed)	N
713	chr9	16804166	16804167	rs10962612	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Low tan response	46,768 European ancestry low tanning cases, 74,528 European ancestry moderate and high tanning controls	15,547 European ancestry low tanning  cases, 39,835 European moderate and high tanning ancestry controls	9p22.2	BCN2	rs10962612-T	NR	4E-25		0.104	[0.041-0.167] unit decrease	Affymetrix [8351141] (imputed)	N
713	chr9	16805331	16805332	rs7865762	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Brown vs. black hair color	269,394 British ancestry brown hair individuals, 14,526 British ancestry black hair individuals	NA	9p22.2	BNC2	rs7865762-?	NR	4E-8		1.0914648	NR	Affymetrix [9154080] (imputed)	N
713	chr9	16809957	16809958	rs17743593	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9p22.2		rs17743593-?	NR	6E-13				NR [~ 8900000] (imputed)	N
713	chr9	16810444	16810445	rs189669683	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	9p22.2	BNC2	rs189669683-C	0.984	1E-7	(AA)	0.129	NR unit increase	Illumina [NR] (imputed)	N
713	chr9	16846110	16846111	rs10962638	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	9p22.2	BNC2	rs10962638-A	0.149513	4E-10		0.01441	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
713	chr9	16846110	16846111	rs10962638	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	9p22.2	BNC2	rs10962638-A	0.149513	1E-9	(females)	0.01977	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
713	chr9	16846110	16846111	rs10962638	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	9p22.2	BNC2	rs10962638-A	0.149513	4E-10	(females)	0.02122	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
713	chr9	16846110	16846111	rs10962638	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	9p22.2	BNC2	rs10962638-A	0.149513	4E-10		0.01535	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
713	chr9	16848789	16848790	rs1339552	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9p22.2	NR	rs1339552-T	0.454117	3E-11				Affymetrix, Illumina [19872809] (imputed)	N
713	chr9	16854074	16854075	rs7038494	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	9p22.2	BNC2	rs7038494-C	NR	2E-11		0.038077	[0.027-0.049] unit increase	Affymetrix [321016] (imputed)	N
713	chr9	16864520	16864521	rs2153271	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	9p22.2		rs2153271-?	NR	2E-12		0.924481	[0.9-0.95]	NR [685523]	N
713	chr9	16864520	16864521	rs2153271	33549134	Adolphe C	2021-02-06	Genome Med	Genetic and functional interaction network analysis reveals global enrichment of regulatory T cell genes influencing basal cell carcinoma susceptibility.	Basal cell carcinoma	17,416 European ancestry cases, 375,455 European ancestry controls	NA	9p22.2	BNC2	rs2153271-C	0.387534	2E-12		0.07874978	[0.057-0.101] unit decrease	Affymetrix [7260263] (imputed)	N
713	chr9	16864520	16864521	rs2153271	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Keratinocyte cancer (MTAG)	at least 18,538 European ancestry cases, at least 340,302 European ancestry controls	NA	9p22.2	BNC2	rs2153271-T	0.615052	5E-31		1.11	[1.09-1.12]	Affymetrix [7600000] (imputed)	N
713	chr9	16864520	16864521	rs2153271	20585627	Eriksson N	2010-06-24	PLoS Genet	Web-based, participant-driven studies yield novel genetic associations for common traits.	Freckling	9,126 European ancestry individuals	NA	9p22.2	BNC2	rs2153271-C	0.41	4E-10		0.4	[NR] unit decrease	Illumina [535076]	N
713	chr9	16872322	16872323	rs11789875	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	9p22.2	BNC2	rs11789875-A	0.1511	1E-10		0.1563	[0.11-0.2] unit increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
713	chr9	16873550	16873551	rs10810650	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Low tan response	46,768 European ancestry low tanning cases, 74,528 European ancestry moderate and high tanning controls	15,547 European ancestry low tanning  cases, 39,835 European moderate and high tanning ancestry controls	9p22.2	BNC2	rs10810650-C	NR	2E-59		0.144	[0.073-0.215] unit decrease	Affymetrix [8351141] (imputed)	N
713	chr9	16877361	16877362	rs10962654	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	9p22.2	BNC2	rs10962654-C	NR	7E-9		0.0229633	[0.015-0.031] unit increase	Affymetrix [321016] (imputed)	N
713	chr9	16880464	16880465	rs1981224	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	9p22.2		rs1981224-?	NR	3E-9				NR [~ 8900000] (imputed)	N
713	chr9	16882915	16882916	rs4644350	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	9p22.2		rs4644350-G	NR	1E-10		0.0111	[0.0078-0.0144] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
713	chr9	16882915	16882916	rs4644350	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	9p22.2	NR	rs4644350-G	0.623804	2E-13		0.015143	[0.011-0.019] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
713	chr9	16884585	16884586	rs10810657	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	9p22.2	NR	rs10810657-A	NR	1E-9		0.0152	[0.01-0.02] unit decrease	Affymetrix [9000000] (imputed)	N
713	chr9	16884585	16884586	rs10810657	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	9p22.2		rs10810657-A	0.625148	5E-11		0.01506301	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
713	chr9	16884585	16884586	rs10810657	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	9p22.2		rs10810657-A	0.62518	5E-12		0.015804315	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
713	chr9	16884585	16884586	rs10810657	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	9p22.2	NR	rs10810657-T	0.375323	5E-20		0.0182458	[0.014-0.022] unit increase	Affymetrix [15000001]	N
713	chr9	16884585	16884586	rs10810657	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	9p22.2	PABPC1P11	rs10810657-?	NR	1E-11		0.018	[0.013-0.023] unit increase	Affymetrix [5701386] (imputed)	N
713	chr9	16884585	16884586	rs10810657	32041948	Sarin KY	2020-02-10	Nat Commun	Genome-wide meta-analysis identifies eight new susceptibility loci for cutaneous squamous cell carcinoma.	Cutaneous squamous cell carcinoma	19,149 European ancestry cases, 680,049 European ancestry controls	NA	9p22.2	BNC2, CNTLN	rs10810657-T	0.404	1E-17		0.1	[0.08-0.12] unit decrease	NR [13607369] (imputed)	N
713	chr9	16884585	16884586	rs10810657	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Squamous cell carcinoma	9,674 European ancestry cases, 625,657 European ancestry controls	NA	9p22.2	BNC2	rs10810657-A	0.443101	8E-15		1.13	[1.10-1.16]	Affymetrix, Illumina [up to 9061544] (imputed)	N
713	chr9	16884585	16884586	rs10810657	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Basal cell carcinoma	31,787 European ancestry cases, 619,351 European ancestry controls	NA	9p22.2	BNC2	rs10810657-A	0.443101	4E-26		1.1	[1.08-1.11]	Affymetrix, Illumina [up to 9061544] (imputed)	N
713	chr9	16884585	16884586	rs10810657	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	9p22.2		rs10810657-?	NR	3E-14				NR [~ 8900000] (imputed)	N
713	chr9	16884585	16884586	rs10810657	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Skin pigmentation traits	4,988 Spanish ancestry individuals	NA	9p22.2	BNC2, LOC105375983	rs10810657-?		3E-8	(Skin color)	0.08899	[0.057-0.121] unit decrease	Illumina [9499600] (imputed)	N
713	chr9	16884585	16884586	rs10810657	27539887	Chahal HS	2016-08-19	Nat Commun	Genome-wide association study identifies 14 novel risk alleles associated with basal cell carcinoma.	Basal cell carcinoma	12.945 European ancestry cases, 274,252 European ancestry controls	4,242 European ancestry cases, 12,802 European ancestry controls	9p22.2	BNC2	rs10810657-A	0.59	2E-17		1.1111112	[NR]	Illumina [at least 560000] (imputed)	N
713	chr9	16884585	16884586	rs10810657	27424798	Chahal HS	2016-07-18	Nat Commun	Genome-wide association study identifies novel susceptibility loci for cutaneous squamous cell carcinoma.	Cutaneous squamous cell carcinoma	6,579 European ancestry cases, 280,558 European ancestry controls	825 European ancestry cases, 11,518 European ancestry controls	9p22.2	BNC2, CNTLN	rs10810657-A	0.59	1E-8		1.1111112		Affymetrix, Illumina [at least 560000] (imputed)	N
713	chr9	16885016	16885017	rs12350739	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Skin cancer	25,928 European ancestry cases, 466,275 European ancestry controls, 154 East Asian ancestry cases, 178,572 East Asian ancestry controls	NA	9p22.2		rs12350739-A	NR	3E-13		0.0716	[0.052-0.091] unit increase	Affymetrix, Illumina [25845421] (imputed)	N
713	chr9	16885016	16885017	rs12350739	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	9p22.2	NR	rs12350739-A	0.609504	1E-14		0.017847838	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
713	chr9	16885016	16885017	rs12350739	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	9p22.2	NR	rs12350739-A	0.60949	8E-17		0.019240279	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
713	chr9	16885016	16885017	rs12350739	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	9p22.2		rs12350739-A	0.609479	2E-11		0.0154796075	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
713	chr9	16885016	16885017	rs12350739	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	9p22.2		rs12350739-A	0.609363	4E-18		0.019948341	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
713	chr9	16885016	16885017	rs12350739	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	9p22.2		rs12350739-A	0.609351	1E-19		0.020890301	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
713	chr9	16885016	16885017	rs12350739	32339537	Roberts V	2020-04-24	J Invest Dermatol	Genome wide association study identifies genetic associations with perceived age.	Youthful appearance (self-reported)	423,992 European ancestry individuals	NA	9p22.2	BNC2	rs12350739-G	0.392756	1E-30		1.052763	NR	Affymetrix [~ 9600000] (imputed)	N
713	chr9	16885016	16885017	rs12350739	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Sunburns	approximately 344,000 European ancestry individuals	NA	9p22.2		rs12350739-?	NR	4E-53				NR [~ 8900000] (imputed)	N
713	chr9	16885016	16885017	rs12350739	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	9p22.2		rs12350739-?	NR	3E-93				NR [~ 8900000] (imputed)	N
713	chr9	16885016	16885017	rs12350739	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Brown vs. black hair color	269,394 British ancestry brown hair individuals, 14,526 British ancestry black hair individuals	NA	9p22.2	BNC2	rs12350739-?	NR	1E-18		1.1152002	NR	Affymetrix [9154080] (imputed)	N
713	chr9	16885016	16885017	rs12350739	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	9p22.2	BNC2	rs12350739-?	NR	1E-32		1.0997471	NR	Affymetrix [9154080] (imputed)	N
713	chr9	16885016	16885017	rs12350739	29662168	Hysi PG	2018-04-16	Nat Genet	Genome-wide association meta-analysis of individuals of European ancestry identifies new loci explaining a substantial fraction of hair color variation and heritability.	Hair color	290,891 European ancestry individuals	27,865 European ancestry individuals	9p22.2	BNC2	rs12350739-A	0.402	2E-44		0.038	[0.032-0.044] unit decrease	Affymetrix, Illumina [at least 560000] (imputed)	N
713	chr9	16886537	16886538	rs13296795	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Non-melanoma skin cancer	5,912 European ancestry cases, 181,740 European ancestry controls		9p22.2	NR	rs13296795-A	NR	7E-6		1.28221	[1.1509-1.4285]	Affymetrix [5734850] (imputed)	N
713	chr9	16887365	16887366	rs3927680	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	Triglyceride levels	up to 237,050 European ancestry individuals, up to 16,935 African ancestry individuals, up to 30,468 South Asian ancestry individuals, up to 8,287 East Asian ancestry individuals, 5,084 Hispanic individuals	up to 286,268 European and unknown ancestry individuals	9p22.2	BNC2	rs3927680-A	NR	7E-15		0.01565172	[0.012-0.02] unit decrease	Illumina [242289]	N
713	chr9	16887365	16887366	rs3927680	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	Triglyceride levels	up to 237,050 European ancestry individuals	NA	9p22.2	NR	rs3927680-A	0.59	6E-10		0.019	unit decrease	Illumina [242289]	N
713	chr9	16887365	16887366	rs3927680	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	Total cholesterol levels	up to 237,050 European ancestry individuals	NA	9p22.2	NR	rs3927680-A	0.59	4E-9		0.018	unit decrease	Illumina [242289]	N
713	chr9	16900622	16900623	rs201551585	31235810	Fung K	2019-06-24	Sci Rep	Genome-wide association study identifies loci for arterial stiffness index in 127,121 UK Biobank participants.	Arterial stiffness index	127,121 European ancestry individuals	NA	9p22.2	BNC2	rs201551585-C	0.989	4E-6		0.091	[0.052-0.13] unit increase	Affymetrix [~ 10446505] (imputed)	N
713	chr9	16901066	16901067	rs62543565	25705849	Jacobs LC	2015-02-23	J Invest Dermatol	A Genome-Wide Association Study Identifies the Skin Color Genes IRF4, MC1R, ASIP, and BNC2 Influencing Facial Pigmented Spots.	Facial pigmentation	2,844 European ancestry individuals	NA	9p22.2	BCN2	rs62543565-C	0.37	2E-7		6.32	[6.31-6.33] unit decrease	Illumina [6846125] (imputed)	N
713	chr9	16901227	16901228	rs13300853	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	9p22.2	intergenic	rs13300853-T	0.3464	1E-9		0.02279458	[0.015-0.03] unit increase	Affymetrix [~ 2500000] (imputed)	N
713	chr9	16901227	16901228	rs13300853	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	9p22.2	intergenic	rs13300853-T	0.3464	6E-10		0.02334518	[0.016-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
713	chr9	16903365	16903366	rs10738466	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	9p22.2		rs10738466-A	0.62351	5E-11		0.015286957	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
713	chr9	16904845	16904846	rs7033354	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	Triglyceride levels	up to 23,508 African ancestry individuals, 4,649 Asian ancestry individuals, up to 77,047 European ancestry individuals, 6,705 Hispanic individuals	NA	9p22.2		rs7033354-T	0.661	3E-6	(EA)	0.0128	[0.0073-0.0183] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
713	chr9	16904845	16904846	rs7033354	30525989	Siewert KM	2018-12-01	Circ Genom Precis Med	Bivariate Genome-Wide Association Scan Identifies 6 Novel Loci Associated With Lipid Levels and Coronary Artery Disease.	Coronary artery disease and LDL cholesterol levels (multivariate analysis)	122,733 coronary artery disease cases, 424,528 coronary artery disease controls, 188,577 individuals	NA	9p22.2	NR	rs7033354-T	0.63	1E-8				NR [NR]	N
713	chr9	16905823	16905824	rs10962680	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	9p22.2	BNC2	rs10962680-C	0.260952	7E-9		0.013779	[0.0091-0.0184] unit increase	Affymetrix [NR] (imputed)	N
713	chr9	16905823	16905824	rs10962680	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	9p22.2	BNC2	rs10962680-C	0.260883	3E-8		0.0137278	[0.0089-0.0186] unit increase	Affymetrix [NR] (imputed)	N
714	chr9	16913835	16913836	rs11445081	33893285	Guindo-Martinez M	2021-04-23	Nat Commun	The impact of non-additive genetic associations on age-related complex diseases.	Cancer	17,131 European ancestry cases, 39,506 European ancestry controls	NA	9p22.2		rs11445081-A	0.5701052	1E-8		1.08		Affymetrix [15611556] (imputed)	N
714	chr9	16915020	16915021	rs3814113	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	9p22.2		rs3814113-T	0.6814	7E-14		0.1214694	[0.089-0.154] mmHg decrease	Affymetrix, Illumina [242866] (imputed)	N
714	chr9	16915020	16915021	rs3814113	25581431	Kuchenbaecker KB	2015-01-12	Nat Genet	Identification of six new susceptibility loci for invasive epithelial ovarian cancer.	Epithelial ovarian cancer	4,368 European ancestry cases, 9,123 European ancestry controls,	2,462 European ancestry BRCA1 mutation carrier cases, 12,790 European ancestry BRCA1 mutation carrier controls, up to 631 European ancestry BRCA2 mutation carrier cases, 7,580 European ancestry BRCA2 mutation carrier controls, 9,627 European ancestry serous cases, 1,442 European ancestry non-serous cases, 21,722 European ancestry controls	9p22.2	BNC2	rs3814113-G	0.32	6E-50		1.2658228	[1.22-1.32]	Illumina [up to 10962898] (imputed)	N
714	chr9	16915020	16915021	rs3814113	23544013	Couch FJ	2013-03-27	PLoS Genet	Genome-wide association study in BRCA1 mutation carriers identifies novel loci associated with breast and ovarian cancer risk.	Ovarian cancer in BRCA1 mutation carriers	683 European ancestry cases, 2,044 European ancestry controls	1,706 European ancestry cases, 10,258 European ancestry controls	9p22.2	intergenic	rs3814113-A	0.66	6E-11		1.3	[1.2-1.41]	Illumina [2568349] (imputed)	N
714	chr9	16915020	16915021	rs3814113	23535730	Pharoah PD	2013-04-01	Nat Genet	GWAS meta-analysis and replication identifies three new susceptibility loci for ovarian cancer.	Ovarian cancer	3,769 European ancestry cases, 4,396 European ancestry controls	211 East Asian ancestry cases, 972 East Asian ancestry controls, 39,674 European ancestry individuals, 106 Malaysian ancestry cases, 106 Malaysian ancestry controls	9p22.2	NR	rs3814113-?	0.68	4E-32	(Serious invasive)	1.28	[1.23-1.33]	Illumina [2508744] (imputed)	N
714	chr9	16915020	16915021	rs3814113	23535730	Pharoah PD	2013-04-01	Nat Genet	GWAS meta-analysis and replication identifies three new susceptibility loci for ovarian cancer.	Ovarian cancer	3,769 European ancestry cases, 4,396 European ancestry controls	211 East Asian ancestry cases, 972 East Asian ancestry controls, 39,674 European ancestry individuals, 106 Malaysian ancestry cases, 106 Malaysian ancestry controls	9p22.2	NR	rs3814113-?	0.68	4E-29	(All invasive)	1.21	[1.17-1.25]	Illumina [2508744] (imputed)	N
714	chr9	16915020	16915021	rs3814113	19648919	Song H	2009-08-02	Nat Genet	A genome-wide association study identifies a new ovarian cancer susceptibility locus on 9p22.2.	Ovarian cancer	1,817 European ancestry cases, 2,353 European ancestry controls	6,944 European ancestry cases, 9,477 European ancestry controls	9p22.2	BNC2, LOC648570, CNTLN	rs3814113-T	0.68	5E-19		1.22	[1.16-1.27]	Illumina [up to 2000000] (imputed)	N
714	chr9	16915873	16915874	rs10962692	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	Serous invasive ovarian cancer	14,049 European ancestry cases, 40,941 European ancestry controls	NA	9p22.2	NR	rs10962692-G	0.799624	3E-43		1.3252935	[1.27262437839255-1.38014255146877]	Illumina [11595112] (imputed)	N
714	chr9	16915873	16915874	rs10962692	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	Ovarian cancer in BRCA2 mutation carriers	954 European ancestry carrier cases, 11,458 European ancestry carrier controls	NA	9p22.2	NR	rs10962692-G	0.799624	9E-11		1.5	[1.32777950250739-1.69772989025038]	Illumina [11595112] (imputed)	N
714	chr9	16915873	16915874	rs10962692	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	Ovarian cancer in BRCA1 mutation carriers	2,933 European ancestry carrier cases, 16,103 European ancestry carrier controls	NA	9p22.2	NR	rs10962692-G	0.799624	1E-14		1.3346913	[1.24035297950519-1.43620468676761]	Illumina [11595112] (imputed)	N
714	chr9	16915873	16915874	rs10962692	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	Invasive epithelial ovarian cancer	22,406 European ancestry cases, 40,941 European ancestry controls	NA	9p22.2	NR	rs10962692-G	0.799624	9E-36		1.2424945	[1.20065901834152-1.28578755258347]	Illumina [11595112] (imputed)	N
714	chr9	16915873	16915874	rs10962692	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	High-grade serous ovarian cancer	13,037 European ancestry cases, 40,941 European ancestry controls	NA	9p22.2	NR	rs10962692-G	0.799624	1E-47		1.358497	[1.30256836396842-1.41682722055063]	Illumina [11595112] (imputed)	N
714	chr9	16915873	16915874	rs10962692	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	Epithelial ovarian cancer	16,924 European ancestry cases, 68,502 European ancestry controls	NA	9p22.2	NR	rs10962692-G	0.799624	5E-64		1.3368285	[1.29251250189538-1.38266389898672]	Illumina [11595112] (imputed)	N
714	chr9	16929841	16929842	rs10810682	33547071	Bonfante B	2021-02-05	Sci Adv	A GWAS in Latin Americans identifies novel face shape loci, implicating VPS13B and a Denisovan introgressed region in facial variation.	Facial morphology (columella size)	6,169 Latin American individuals	NA	9p22.2		rs10810682-?	NR	8E-9				Illumina [8703729] (imputed)	N
714	chr9	16958462	16958463	rs10962767	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 2)	3,566 European ancestry individuals	4,680 European ancestry individuals	9p22.2		rs10962767-C	0.442422434	5E-14				Illumina [7417619] (imputed)	N
714	chr9	16958462	16958463	rs10962767	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Chin dimples	58,032 European ancestry cases, 13,457 European ancestry controls	NA	9p22.2	BNC2, CNTLN	rs10962767-?	NR	2E-13		1.1111112	[1.08-1.14]	Illumina [13537761] (imputed)	N
714	chr9	16970808	16970809	rs4961511	23322567	Lopes MC	2013-01-15	Invest Ophthalmol Vis Sci	Identification of a candidate gene for astigmatism.	Corneal astigmatism	22,100 European ancestry individuals		9p22.2	NR	rs4961511-G		9E-6		0.047	[NR] unit increase	Affymetrix, Illumina [2800000] (imputed)	N
714	chr9	16978915	16978916	rs2056684	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota (beta diversity)	858 Metropolitan French ancestry individuals	NA	9p22.2	NR	rs2056684-A	0.255	8E-7	(Jaccard metric)	4.800856	NR z-score increase	Illumina [5293637] (imputed)	N
714	chr9	16982413	16982414	rs10962792	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	9p22.2	NR	rs10962792-?	NR	5E-8				Affymetrix [~ 8270000] (imputed)	N
714	chr9	16986111	16986112	rs7029491	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	9p22.2		rs7029491-?	NR	2E-16				NR [~ 8900000] (imputed)	N
714	chr9	16986320	16986321	rs72700122	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9p22.2	NR	rs72700122-G	0.01568	7E-9	(SERPINA1)	2.516	NR unit increase	Illumina [1671387] (imputed)	N
714	chr9	16987918	16987919	rs56216509	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	9p22.2	RP11-132E11.2	rs56216509-T	NR	1E-9		0.0270792	[0.018-0.036] unit decrease	Affymetrix [321114] (imputed)	N
714	chr9	16991331	16991332	rs10756851	31564439	Fang H	2019-09-26	Am J Hum Genet	Harmonizing Genetic Ancestry and Self-identified Race/Ethnicity in Genome-wide Association Studies.	Height	up to 248,507 non-Hispanic white individuals, up to 68,155 non-Hispanic black individuals, up to 25,847 Hispanic individuals, up to 3,054 Asian ancestry individuals	NA	9p22.2	NR	rs10756851-G	NR	7E-8				Affymetrix [723305]	N
714	chr9	16991331	16991332	rs10756851	31564439	Fang H	2019-09-26	Am J Hum Genet	Harmonizing Genetic Ancestry and Self-identified Race/Ethnicity in Genome-wide Association Studies.	Height	up to 248,507 non-Hispanic white individuals, up to 68,155 non-Hispanic black individuals, up to 25,847 Hispanic individuals, up to 3,054 Asian ancestry individuals	NA	9p22.2	NR	rs10756851-G	NR	4E-8	(EA)	0.04	NR unit decrease	Affymetrix [723305]	N
714	chr9	17016502	17016503	rs263645	30718901	Howard DM	2019-02-04	Nat Neurosci	Genome-wide meta-analysis of depression identifies 102 independent variants and highlights the importance of the prefrontal brain regions.	Depression	118,811 European ancestry cases, 327,427 European ancestry controls, 127,552 cases, 233,763 controls	414,055 European ancestry cases, 892,299 European ancestry controls	9p22.2	NR	rs263645-A	0.5438	7E-16		1.018	[1.013-1.022]	NR [8098588] (imputed)	N
714	chr9	17023805	17023805	rs539864802	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	9p22.2	RP11-132E11.2	rs539864802-GA	NR	2E-9		0.0243245	[0.016-0.032] unit decrease	Affymetrix [321114] (imputed)	N
714	chr9	17027406	17027407	rs112488223	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	9p22.2		rs112488223-?	NR	5E-16				NR [~ 8900000] (imputed)	N
714	chr9	17029941	17029942	rs166418	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Major depressive disorder (MTAG)	at least 170,756 European ancestry cases, at least 329,443 European ancestry controls	NA	9p22.2	NR	rs166418-T	0.4843	2E-9		0.024698127	[0.017-0.033] unit decrease	NR [NR]	N
714	chr9	17029941	17029942	rs166418	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	9p22.2	NR	rs166418-T	0.476010942645625	3E-10		0.005802806	[0.004-0.0076] unit decrease	NR [NR]	N
714	chr9	17029941	17029942	rs166418	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	9p22.2	NR	rs166418-T	0.476010942645625	3E-10		0.009296315	[0.0064-0.0122] unit decrease	NR [NR]	N
714	chr9	17029941	17029942	rs166418	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	9p22.2	NR	rs166418-T	0.476010942645625	3E-10		0.005965407	[0.0041-0.0078] unit decrease	NR [NR]	N
714	chr9	17033839	17033840	rs263575	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	9p22.2	NR	rs263575-A	0.452016126150409	1E-9		0.0072664097	[0.0049-0.0096] unit decrease	NR [NR]	N
714	chr9	17033839	17033840	rs263575	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	9p22.2	NR	rs263575-A	0.452016126150409	2E-9		0.007762131	[0.0052-0.0103] unit decrease	NR [NR]	N
714	chr9	17033839	17033840	rs263575	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	9p22.2	NR	rs263575-A	0.4601	2E-8		0.0066	[0.0042-0.009] unit decrease	NR [7666894] (imputed)	N
715	chr9	17040370	17040371	rs78817479	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	9p22.2	CNTLN	rs78817479-C	0.917901	6E-11		0.0218073	[0.015-0.028] unit decrease	NR [13737936] (imputed)	N
715	chr9	17040370	17040371	rs78817479	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	9p22.2		rs78817479-?	NR	1E-12		0.0274128	[0.02-0.035] unit decrease	Affymetrix [20259828] (imputed)	N
715	chr9	17040819	17040820	rs79439080	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9p22.2		rs79439080-?	NR	7E-24				NR [~ 8900000] (imputed)	N
715	chr9	17044970	17044971	rs393488	32279069	Rovira P	2020-04-12	Neuropsychopharmacology	Shared genetic background between children and adults with attention deficit/hyperactivity disorder.	Attention deficit hyperactivity disorder (persistent)	6,532 European ancestry cases, 15,874 European ancestry controls	NA	9p22.2	NR	rs393488-?	0.53	3E-6		1.1111112	[1.06-1.16]	Illumina [~ 1113287] (imputed)	N
715	chr9	17044970	17044971	rs393488	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Help-seeking from a GP	113,262 British ancestry cases, 219,360 British ancestry controls	NA	9p22.2	NR	rs393488-T	0.531	2E-10		1.0341262	[1.02-1.04]	NR [5276842] (imputed)	N
715	chr9	17091147	17091148	rs263598	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	9p22.2	NR	rs263598-?	NR	5E-9				Affymetrix [~ 8270000] (imputed)	N
715	chr9	17091463	17091464	rs10962864	32279069	Rovira P	2020-04-12	Neuropsychopharmacology	Shared genetic background between children and adults with attention deficit/hyperactivity disorder.	Attention deficit hyperactivity disorder (persistent)	6,532 European ancestry cases, 15,874 European ancestry controls	NA	9p22.2	NR	rs10962864-T	0.16	5E-7		1.16	[1.09-1.23]	Illumina [~ 1113287] (imputed)	N
715	chr9	17125859	17125860	rs113992717	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9p22.2	NR	rs113992717-T	0.01394	3E-8	(SPTAN1)	0.3883	NR unit increase	Illumina [1671387] (imputed)	N
715	chr9	17130155	17130156	rs17754109	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	9p22.2	NR	rs17754109-?	NR	3E-89				Affymetrix [NR]	N
715	chr9	17135433	17135434	rs12003380	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	9p22.2		rs12003380-?	NR	5E-9		0.016	unit decrease	NR [NR]	N
715	chr9	17162412	17162413	rs6475111	32279069	Rovira P	2020-04-12	Neuropsychopharmacology	Shared genetic background between children and adults with attention deficit/hyperactivity disorder.	Attention deficit hyperactivity disorder (persistent)	6,532 European ancestry cases, 15,874 European ancestry controls	NA	9p22.2	NR	rs6475111-T	0.26	5E-6		1.13	[1.07-1.18]	Illumina [~ 1113287] (imputed)	N
716	chr9	17172199	17172200	rs2779767	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	9p22.2	NR	rs2779767-?	NR	8E-8				Affymetrix [NR]	N
716	chr9	17214937	17214938	rs10962908	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	9p22.2	CNTLN	rs10962908-T	NR	2E-8		0.0254589	[0.017-0.034] unit decrease	Affymetrix [321114] (imputed)	N
716	chr9	17235155	17235156	rs16935416	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	9p22.2	NR	rs16935416-A	0.0947	4E-10		0.0197	[0.013-0.026] unit decrease	NR [~ 27400000] (imputed)	N
716	chr9	17237272	17237273	rs11366076	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol use disorder	57,564 European ancestry cases, 256,395 European ancestry controls	NA	9p22.2	NR	rs11366076-T	0.1622	3E-9		5.933	[NR] unit decrease	Affymetrix [7003540] (imputed)	N
716	chr9	17263747	17263748	rs145190003	32279069	Rovira P	2020-04-12	Neuropsychopharmacology	Shared genetic background between children and adults with attention deficit/hyperactivity disorder.	Attention deficit hyperactivity disorder (persistent)	6,532 European ancestry cases, 15,874 European ancestry controls	NA	9p22.2	NR	rs145190003-?	0.26	3E-6		1.1235955	[1.06-1.18]	Illumina [~ 1113287] (imputed)	N
716	chr9	17295540	17295541	rs10963012	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	9p22.2	CNTLN	rs10963012-C	0.6314	3E-8		0.0362	[0.023-0.049] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
717	chr9	17328927	17328928	rs12553068	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	9p22.2		rs12553068-T	0.34	2E-8		5.58	z score increase	Affymetrix [9061022] (imputed)	N
717	chr9	17328927	17328928	rs12553068	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	9p22.2	NR	rs12553068-T	0.2827	1E-9				NR [9056863] (imputed)	N
717	chr9	17346854	17346855	rs7861565	27958378	Floyd JS	2016-12-13	Pharmacogenomics J	Large-scale pharmacogenomic study of sulfonylureas and the QT, JT and QRS intervals: CHARGE Pharmacogenomics Working Group.	QRS interval (sulfonylurea treatment interaction)	2,095 European ancestry exposed individuals, 42,907 European ancestry unexposed individuals, 1,167 African American exposed individuals, 10,564 African American unexposed individuals, 794 Hispanic/Latino American exposed individuals, 14,330 Hispanic/Latino American unexposed individuals	NA	9p22.2	CNTLN	rs7861565-?	NR	6E-8	(AA)	4.0	[2.63-5.37] ms decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
717	chr9	17346854	17346855	rs7861565	27958378	Floyd JS	2016-12-13	Pharmacogenomics J	Large-scale pharmacogenomic study of sulfonylureas and the QT, JT and QRS intervals: CHARGE Pharmacogenomics Working Group.	QRS interval (sulfonylurea treatment interaction)	2,095 European ancestry exposed individuals, 42,907 European ancestry unexposed individuals, 1,167 African American exposed individuals, 10,564 African American unexposed individuals, 794 Hispanic/Latino American exposed individuals, 14,330 Hispanic/Latino American unexposed individuals	NA	9p22.2	CNTLN	rs7861565-?	NR	2E-7		3.7	[2.33-5.07] ms decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
717	chr9	17348207	17348208	rs75420629	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung adenocarcinoma	11,273 European ancestry cases,  55,483 European ancestry controls	NA	9p22.2	CNTLN	rs75420629-C	0.032732199	3E-6		1.252284	[1.139214867-1.376575508]	Illumina [10439017] (imputed)	N
717	chr9	17363421	17363422	rs55863214	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	9p22.2		rs55863214-?	NR	5E-9				NR [~ 8900000] (imputed)	N
717	chr9	17367945	17367946	rs10963067	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	9p22.2	CNTLN	rs10963067-A	NR	3E-9		0.0296909	[0.02-0.039] unit decrease	Affymetrix [319769] (imputed)	N
717	chr9	17367945	17367946	rs10963067	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	9p22.2	CNTLN	rs10963067-A	NR	5E-9		0.0290958	[0.019-0.039] unit decrease	Affymetrix [319769] (imputed)	N
717	chr9	17367945	17367946	rs10963067	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	9p22.2	NR	rs10963067-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
717	chr9	17367945	17367946	rs10963067	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	9p22.2	NR	rs10963067-?	NR	6E-12				Affymetrix [~ 8270000] (imputed)	N
717	chr9	17367945	17367946	rs10963067	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	9p22.2	NR	rs10963067-C	0.91	1E-11		0.022	[0.016-0.028] unit increase	Affymetrix [2446094] (imputed)	N
717	chr9	17367945	17367946	rs10963067	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	9p22.2	NR	rs10963067-C	0.91	5E-8				Affymetrix [2446094] (imputed)	N
717	chr9	17429647	17429648	rs76897886	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	9p22.2	CNTLN	rs76897886-C	NR	4E-10		0.0356246	[0.024-0.047] unit decrease	Affymetrix [321114] (imputed)	N
718	chr9	17456709	17456710	rs73414446	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (90 or 130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	9p22.2	CNTLN	rs73414446-?	NR	5E-6		0.39	[0.22-0.56] unit decrease	Illumina [at least 13000000] (imputed)	N
718	chr9	17458871	17458872	rs10810790	22952603	Hart AB	2012-08-28	PLoS One	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 10 individuals	NA	9p22.2	CNTLN	rs10810790-?	NR	6E-6	(SF7)			Affymetrix [5476100] (imputed)	N
718	chr9	17487944	17487945	rs2383024	22424883	Imboden M	2012-03-15	J Allergy Clin Immunol	Genome-wide association study of lung function decline in adults with and without asthma.	Pulmonary function decline	1,441 European ancestry asthma cases, 2,677 European ancestry controls	1,160 European ancestry asthma cases, 10,858 European ancestry controls	9p22.2	intergenic	rs2383024-?	NR	9E-6	(FEV1 decline in asthmatics)	0.1829	[0.10-0.26] unit decrease	Illumina [~ 2500000] (imputed)	N
718	chr9	17539319	17539320	rs7866802	31081985	Stein MB	2019-05-13	Am J Med Genet B Neuropsychiatr Genet	Genome-wide analyses of psychological resilience in U.S. Army soldiers.	Psychological resilience (self-assessed)	11,473 European ancestry individuals	NA	9p22.2	LOC107987051	rs7866802-T	0.3493	1E-7		0.3163	unit decrease	Illumina [at least 360704] (imputed)	N
719	chr9	17579689	17579690	rs13294100	32201043	Smeland OB	2020-02-08	Biol Psychiatry	Genome-wide Association Analysis of Parkinson's Disease and Schizophrenia Reveals Shared Genetic Architecture and Identifies Novel Risk Loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	NA	9p22.2	SH3GL2	rs13294100-T		3E-10		0.0942	[0.065-0.124] unit decrease	Illumina [NR]	N
719	chr9	17579689	17579690	rs13294100	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	9p22.2	SH3GL2	rs13294100-T	0.3422	9E-18		0.0859	[0.066-0.106] unit decrease	NR [7784415] (imputed)	N
719	chr9	17579689	17579690	rs13294100	28892059	Chang D	2017-09-11	Nat Genet	A meta-analysis of genome-wide association studies identifies 17 new Parkinson's disease risk loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	5,851 European ancestry cases, 5,866 European ancestry controls	9p22.2	SH3GL2	rs13294100-G	0.629	5E-13		1.0869565	[1.06-1.12]	Illumina [11933700] (imputed)	N
719	chr9	17622807	17622808	rs3808749	32701715	Zhang Y	2020-07-21	J Bone Joint Surg Am	PPARGC1B Is Associated with Nontraumatic Osteonecrosis of the Femoral Head: A Genomewide Association Study on a Chart-Reviewed Cohort.	Nontraumatic osteonecrosis of the femoral head	118 European ancestry cases, 56,811 European ancestry controls	NA	9p22.2	SH3GL2	rs3808749-A	0.028	9E-7		3.25	[2.03-5.20]	Illumina [3905175] (imputed)	N
719	chr9	17687748	17687749	rs16935877	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Pursuit maintenance gain	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	9p22.2	SH3GL2	rs16935877-A	0.07451	2E-7	(EA)			Illumina [4404269] (imputed)	N
720	chr9	17695592	17695593	rs78314758	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Pursuit maintenance gain	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	9p22.2	SH3GL2	rs78314758-A	0.1509	3E-8				Illumina [4404269] (imputed)	N
720	chr9	17715860	17715861	rs2182089	33531474	Burton CL	2021-02-02	Transl Psychiatry	Genome-wide association study of pediatric obsessive-compulsive traits: shared genetic risk between traits and disorder.	Obsessive-compulsive traits	5,018 European ancestry children and adolescents	NA	9p22.2	SH3GL2	rs2182089-?	NR	2E-7		0.11	[0.069-0.151] unit decrease	Illumina [7870334] (imputed)	N
720	chr9	17727064	17727065	rs10756907	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	9p22.2	SH3GL2	rs10756907-A	0.7666	5E-17		0.0926	[0.071-0.114] unit decrease	NR [7784415] (imputed)	N
720	chr9	17731920	17731921	rs1536076	22451204	Pankratz N	2012-03-01	Ann Neurol	Meta-analysis of Parkinson's disease: identification of a novel locus, RIT2.	Parkinson's disease	4,238 European ancestry cases, 4,239 European ancestry controls	3,738 European ancestry cases, 2,111 European ancestry controls	9p22.2	SH3GL2	rs1536076-?	NR	5E-7		1.16	[NR]	Illumina [2500000] (imputed)	N
720	chr9	17736341	17736342	rs2209440	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Parkinson's disease	9,619 European ancestry cases, 324,522 European ancestry controls	NA	9p22.2	SH3GL2	rs2209440-?	NR	8E-9		1.0964912	[1.06-1.13]	Illumina [12438219] (imputed)	N
720	chr9	17748810	17748811	rs1114790	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation GrimAge acceleration	6,148 African American individuals	NA	9p22.2	NR	rs1114790-A	0.9265	1E-8		1.0232	[0.67-1.38] unit decrease	Affymetrix, Illumina [12989440] (imputed)	N
720	chr9	17800121	17800122	rs7032102	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	9p22.2	NR	rs7032102-?	NR	2E-8				Illumina [7760689] (imputed)	N
721	chr9	17858904	17858905	rs16936038	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid pneumonia vs population)	1,004 European ancestry cases, 680,354 European ancestry controls, 218 Hispanic or Latin American cases, 94,318 Hispanic or Latin American controls, 64 Black or African American cases, 22,412 Black or African American controls	NA	9p22.2		rs16936038-?	NR	3E-6		0.7604793	[0.44-1.08] unit decrease	Illumina [9901720] (imputed)	N
721	chr9	17878237	17878238	rs141473550	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (negative Marder score)	1,390 European ancestry cases	NA	9p22.2		rs141473550-A	NR	9E-7	(GLM)	4.864	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
721	chr9	17895104	17895105	rs10810865	19734545	Need AC	2009-09-04	Hum Mol Genet	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA	9p22.2	SH3GL2	rs10810865-?	0.127	4E-6	(PAL6)			Illumina [475971]	N
721	chr9	17934119	17934120	rs17185553	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Small cell lung carcinoma	2,664 European ancestry cases,  21,444 European ancestry controls	NA	9p22.2	SH3GL2, ADAMTSL1	rs17185553-C	0.081032077	9E-7		1.2937081	[1.167420859-1.433656677]	Illumina [10439017] (imputed)	N
721	chr9	17938350	17938351	rs1755289	19010793	Baranzini SE	2008-11-14	Hum Mol Genet	Genome-wide association analysis of susceptibility and clinical phenotype in multiple sclerosis.	Multiple sclerosis	978 European ancestry cases, 883 European ancestry controls	NA	9p22.2	SH3GL2	rs1755289-?	0.61	3E-6		1.35	[NR]	Illumina [551642]	N
722	chr9	17975392	17975393	rs145550046	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	9p22.2	intergenic	rs145550046-G	0.0116847796139733	2E-6	(G_Collinsella_HB)	1.31119	[0.77-1.85] unit decrease	Illumina [7711310] (imputed)	N
722	chr9	17979577	17979578	rs1755271	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	9p22.2	SH3GL2	rs1755271-A	0.298	2E-6	(Light activity )	0.04	[NR] min/d increase	Illumina [899892]	N
722	chr9	17983209	17983210	rs111479695	29698431	Roosenboom J	2018-04-26	PLoS One	Mapping genetic variants for cranial vault shape in humans.	Cephalic index	4,419 European ancestry individuals	NA	9p22.2	NR	rs111479695-C	0.01918	3E-6		1.125	[0.41-1.84] unit increase	Illumina [at least 567677] (imputed)	N
722	chr9	17993588	17993589	rs11789653	28235828	Traglia M	2017-04-03	G3 (Bethesda)	Independent Maternal and Fetal Genetic Effects on Midgestational Circulating Levels of Environmental Pollutants.	Midgestational circulating levels of PBDEs	329 Hispanic mothers, 273 European ancestry mothers, 122 Asian ancestry mothers, 23 South Asian ancestry mothers, 21 African American mothers, 22 other ancestry mothers	NA	9p22.2	ADAMTSL1, SH3GL2	rs11789653-?		3E-8	(BDE-28)	0.65	[0.41-0.89] unit increase	Affymetrix [629686]	N
722	chr9	18013732	18013733	rs7041139	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	9p22.2	SH3GL2	rs7041139-T	0.3221	2E-9		0.015	[0.01-0.02] unit decrease	Affymetrix [19819130] (imputed)	N
722	chr9	18013732	18013733	rs7041139	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	9p22.2	SH3GL2	rs7041139-T	0.3221	3E-12		0.0173	[0.012-0.022] unit decrease	Affymetrix [19819130] (imputed)	N
722	chr9	18013732	18013733	rs7041139	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	9p22.2		rs7041139-?	NR	5E-10				NR [~ 8900000] (imputed)	N
722	chr9	18019691	18019692	rs59656854	34586716	Chen J	2021-09-29	Mol Genet Genomic Med	Heritability and genome-wide association study of blood pressure in Chinese adult twins.	Systolic blood pressure	137 Chinese ancestry twins	NA	9p22.2		rs59656854-?	NR	9E-6				Illumina [7401356] (imputed)	N
722	chr9	18027285	18027286	rs7033195	33109212	Chang H	2020-10-28	BMC Med	Genetic architecture of cardiometabolic risks in people living with HIV.	HDL cholesterol levels in HIV infection	3,095 European ancestry individuals, 3,189 African American individuals	NA	9p22.2	SH3GL2, ADAMTSL1	rs7033195-?		1E-7	(African American)	0.13148236	[0.083-0.18] unit decrease	Illumina [13620258] (imputed)	N
722	chr9	18032971	18032972	rs10963403	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 140)	19,670 European ancestry individuals	NA	9p22.2		rs10963403-?	NR	3E-8				NR [9705931] (imputed)	N
722	chr9	18051533	18051534	rs10963416	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	9p22.2		rs10963416-G	0.39	2E-9		6.0	z score increase	Affymetrix [9061022] (imputed)	N
722	chr9	18073784	18073785	rs10963431	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	9p22.2	NR	rs10963431-C	0.4679	1E-10				NR [9056863] (imputed)	N
723	chr9	18089831	18089832	rs78542921	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (multi-trait analysis)	90,939 European ancestry individuals	NA	9p22.2	SH3GL2, ADAMTSL1	rs78542921-T	0.96	2E-11		0.01	NR unit decrease	Affymetrix, Illumina [8002429] (imputed)	N
723	chr9	18089831	18089832	rs78542921	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (adjusted for vertical disc diameter)	67,040 British ancestry individuals	NA	9p22.2	SH3GL2	rs78542921-T	0.96	8E-10		0.01	[0.0053-0.0147] unit decrease	Affymetrix [at least 8002429] (imputed)	N
723	chr9	18109234	18109235	rs2210327	20445134	Smith NL	2010-05-05	Circ Cardiovasc Genet	Association of genome-wide variation with the risk of incident heart failure in adults of European and African ancestry: a prospective meta-analysis from the cohorts for heart and aging research in genomic epidemiology (CHARGE) consortium.	Heart failure	20,926 European ancestry individuals, 2,895 African ancestry individuals	NA	9p22.2	SH3GL2	rs2210327-?	0.19	7E-7	(AA)	3.14	[0.99-10.00]	Affymetrix, Illumina [2478304] (imputed)	N
723	chr9	18112290	18112291	rs16936330	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	9p22.2	ADAMTSL1	rs16936330-?	NR	8E-6	(sorbitol)	0.52272516	[0.29-0.75] unit decrease	Affymetrix [at least 2500000] (imputed)	N
723	chr9	18130225	18130226	rs10738501	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	9p22.2		rs10738501-?	NR	6E-9				NR [~ 8900000] (imputed)	N
723	chr9	18189777	18189778	rs146250839	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	9p22.2	ADAMTSL1, MIR3152	rs146250839-?	NR	3E-6	(African)			Affymetrix, Illumina [18800000] (imputed)	N
723	chr9	18189777	18189778	rs146250839	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	9p22.2	ADAMTSL1, MIR3152	rs146250839-?	NR	4E-8	(African)			Affymetrix, Illumina [18800000] (imputed)	N
723	chr9	18194382	18194383	rs17198023	28440896	Yin X	2017-04-25	Am J Med Genet B Neuropsychiatr Genet	Genome-wide meta-analysis identifies a novel susceptibility signal at CACNA2D3 for nicotine dependence.	Nicotine dependence	7,297 European ancestry cases, 5,577 European ancestry controls, 918 European ancestry whole genome sequenced cases, 921 European ancestry whole genome sequenced controls, African American cases, 1,500 African American controls	NA	9p22.2	ADAMTSL1	rs17198023-A		5E-6	(EA)	0.04	[0.02-0.06] unit increase	Illumina [at least 3251541] (imputed)	N
723	chr9	18215279	18215280	rs1944766	21897333	Irvin MR	2011-12-01	Pharmacogenet Genomics	Genes linked to energy metabolism and immunoregulatory mechanisms are associated with subcutaneous adipose tissue distribution in HIV-infected men.	Fat distribution (HIV)	192 European ancestry male cases	NA	9p22.2	ADAMTSL1	rs1944766-C	0.44	3E-6	(univariate, upper trunk)			Illumina [319818]	N
724	chr9	18251854	18251855	rs10810935	24962325	Kapoor M	2014-06-11	Drug Alcohol Depend	Genome-wide survival analysis of age at onset of alcohol dependence in extended high-risk COGA families.	Alcohol dependence (age at onset)	685 European ancestry cases, 1,103 European ancestry controls from 118 families	NA	9p22.2	NR	rs10810935-A	0.73	2E-6		1.35	[1.23-1.47]	Illumina [4058415] (imputed)	N
724	chr9	18258311	18258312	rs7846812	34424336	Mobuchon L	2021-08-23	J Natl Cancer Inst	Different Pigmentation Risk Loci for High-Risk Monosomy 3 and Low-Risk Disomy 3 Uveal Melanomas.	Uveal melanoma	1,142 European ancestry cases, 882 European ancestry controls	NA	9p22.2		rs7846812-T	NR	8E-6		0.68	[0.57-0.81]	Illumina [7488175] (imputed)	N
724	chr9	18290856	18290857	rs7862648	30116032	Erlangsen A	2018-08-16	Mol Psychiatry	Genetics of suicide attempts in individuals with and without mental disorders: a population-based genome-wide association study.	Suicide attempts	6,024 European ancestry cases, 44,240 European ancestry controls	NA	9p22.2	Intergenic	rs7862648-G	0.7813	1E-6	(model 1)	1.1212	[1.03-1.21]	Illumina [11601089] (imputed)	N
724	chr9	18290856	18290857	rs7862648	30116032	Erlangsen A	2018-08-16	Mol Psychiatry	Genetics of suicide attempts in individuals with and without mental disorders: a population-based genome-wide association study.	Suicide attempts	6,024 European ancestry cases, 44,240 European ancestry controls	NA	9p22.2	Intergenic	rs7862648-G	0.2187	8E-7	(model 2)	1.1281	[1.03-1.22]	Illumina [11601089] (imputed)	N
724	chr9	18300777	18300778	rs10963560	29682794	Szekely E	2018-04-22	Genet Epidemiol	Genetic associations with childhood brain growth, defined in two longitudinal cohorts.	Cerebral cortical growth	581 European ancestry individuals, 31 African American individuals, 8 Asian American individuals, 15 admixed individuals, 80 other ancestries individuals	NA	9p22.2	SH3GL2, ADAMTSL1	rs10963560-?	NR	5E-6				Illumina [at least 653030]	N
724	chr9	18331115	18331116	rs3924761	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	9p22.2	NR	rs3924761-?	NR	1E-6		0.100954	[0.06-0.142] unit decrease	NR [13958389] (imputed)	N
725	chr9	18362104	18362105	rs1340044	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	9p22.2	NR	rs1340044-T		2E-22		0.11	[0.09-0.13] unit increase	NR [NR]	N
725	chr9	18362104	18362105	rs1340044	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	9p22.2	ADAMTSL1	rs1340044-?		4E-51				Affymetrix, Illumina [NR] (imputed)	N
725	chr9	18362600	18362601	rs7028032	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Myopia (age of diagnosis)	104,293 European ancestry individuals	NA	9p22.2	NR	rs7028032-T	0.412	3E-10		0.045	[0.031-0.059] unit increase	Illumina [~ 10600000] (imputed)	N
725	chr9	18362864	18362865	rs10511652	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	9p22.2	SH3GL2, ADAMTSL1	rs10511652-A	0.416	2E-13		7.355	[NR] z score increase	Affymetrix, Illumina [~ 11000000] (imputed)	N
725	chr9	18362864	18362865	rs10511652	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Myopia	106,086 European ancestry cases, 85,757 European ancestry controls	NA	9p22.2	SH3GL2, ADAMTSL1	rs10511652-?	NR	2E-14		1.058	[1.043-1.073]	Illumina [13762925] (imputed)	N
725	chr9	18363376	18363377	rs1411153	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	9p22.2		rs1411153-?	NR	1E-9				NR [~ 8900000] (imputed)	N
725	chr9	18419149	18419150	rs10963602	32080354	Rasmussen ER	2020-02-21	Pharmacogenomics J	Genome-wide association study of angioedema induced by angiotensin-converting enzyme inhibitor and angiotensin receptor blocker treatment.	Angioedema in response to angiotensin-converting enzyme inhibitor and/or angiotensin receptor blocker	172 European ancestry cases, 1 case, 4,890 European ancestry controls	NA	9p22.2	NR	rs10963602-C	0.204	4E-6		1.758	[1.383-2.234]	Illumina [7585599] (imputed)	N
725	chr9	18444137	18444138	rs6475216	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	9p22.2	ADAMTSL1	rs6475216-A	0.484	9E-6	(Trunk fat mass )	0.03	[NR] kg increase	Illumina [899892]	N
725	chr9	18458067	18458068	rs1340043	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	9p22.2	ADAMTSL1	rs1340043-A	0.41	9E-6	(Fat mass )	0.03	[NR] kg increase	Illumina [899892]	N
726	chr9	18492650	18492651	rs11792038	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	9p22.2	ADAMTSL1	rs11792038-C	0.869546	3E-9		0.0164144	[0.011-0.022] unit increase	NR [13737936] (imputed)	N
726	chr9	18492650	18492651	rs11792038	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	9p22.2		rs11792038-?	NR	6E-10		0.0189399	[0.013-0.025] unit increase	Affymetrix [20259828] (imputed)	N
726	chr9	18554772	18554773	rs34540271	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	9p22.1	NR	rs34540271-C	NR	5E-11		1.051	[1.04-1.07]	Affymetrix, Illumina [29235255] (imputed)	N
726	chr9	18600275	18600276	rs186167755	30219690	Heinzman JT	2018-09-07	J Affect Disord	GWAS and systems biology analysis of depressive symptoms among smokers from the COPDGene cohort.	Depression in smokers	1,622 European ancestry cases, 391 African American cases, 4,954 European ancestry controls, 2,749 African American controls	NA	9p22.1	ADAMTSL1	rs186167755-C	0.9796	2E-6	(AA)			Illumina [NR] (imputed)	N
727	chr9	18619465	18619466	rs17229526	34417961	Guo D	2021-08-21	Biol Trace Elem Res	Preliminary study of genome-wide association identifies novel susceptibility genes for serum mineral elements in the Chinese Han population.	Zinc levels	587 Han Chinese ancestry individuals	NA	9p22.1		rs17229526-?	NR	5E-6		0.047	[-3.76716-3.86116] unit increase	Affymetrix [6423076] (imputed)	N
727	chr9	18623770	18623771	rs1412673	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	9p22.1	NR	rs1412673-G	NR	4E-9		0.0171	[0.011-0.023] unit increase	Affymetrix [9000000] (imputed)	N
727	chr9	18626296	18626297	rs35264941	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	9p22.1	ADAMTSL1	rs35264941-G	0.98231	6E-17		0.0588142	[0.045-0.073] unit increase	NR [13737936] (imputed)	N
727	chr9	18626296	18626297	rs35264941	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	9p22.1		rs35264941-?	NR	4E-17				NR [~ 8900000] (imputed)	N
727	chr9	18626296	18626297	rs35264941	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	9p22.1		rs35264941-?	NR	2E-17		0.0658425	[0.05-0.081] unit increase	Affymetrix [20259828] (imputed)	N
727	chr9	18629282	18629283	rs10963680	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	9p22.1		rs10963680-A	NR	2E-14		0.0171	[0.013-0.021] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
727	chr9	18629282	18629283	rs10963680	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	9p22.1		rs10963680-A	NR	4E-10		0.0088	[0.0061-0.0115] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
727	chr9	18629282	18629283	rs10963680	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	9p22.1	ADAMTSL1	rs10963680-G	0.756512	3E-11		0.00190278	[0.0014-0.0024] unit decrease	Affymetrix [13995440] (imputed)	N
727	chr9	18629282	18629283	rs10963680	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	9p22.1	ADAMTSL1	rs10963680-A	0.24	6E-10		6.19	z-score increase	Affymetrix [4311822] (imputed)	N
727	chr9	18629282	18629283	rs10963680	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	9p22.1	NR	rs10963680-A	NR	9E-12		0.0193	[0.014-0.025] unit increase	Affymetrix [9000000] (imputed)	N
727	chr9	18629282	18629283	rs10963680	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	9p22.1	ADAMTSL1	rs10963680-A	0.2436	3E-9		0.0132	[0.0089-0.0175] unit decrease	Affymetrix [18391927] (imputed)	N
727	chr9	18629282	18629283	rs10963680	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9p22.1		rs10963680-?	NR	1E-15				NR [~ 8900000] (imputed)	N
727	chr9	18640589	18640590	rs7863100	25271088	Singh A	2014-10-01	Eur J Hum Genet	Gene by stress genome-wide interaction analysis and path analysis identify EBF1 as a cardiovascular and metabolic risk gene.	Hip circumference (psychosocial stress interaction)	2,460 European ancestry individuals, 548 Chinese ancestry individuals,   1,547 African American individuals, 1,250 Hispanic individuals	3,157 European ancestry individuals	9p22.1	ADAMTSL1	rs7863100-?	NR	8E-6	(Hispanics)			Affymetrix [528298]	N
727	chr9	18645259	18645260	rs146551666	30690781	Pei YF	2019-02-28	J Bone Miner Res	Joint Association Analysis Identified 18 New Loci for Bone Mineral Density.	Total body bone mineral density (MTAG)	at least 66,628 individuals	NA	9p22.1	NR	rs146551666-G	0.96	2E-8		0.06	[0.038-0.082] unit increase	NR [9704453]	N
727	chr9	18645259	18645260	rs146551666	30690781	Pei YF	2019-02-28	J Bone Miner Res	Joint Association Analysis Identified 18 New Loci for Bone Mineral Density.	Heel bone mineral density (MTAG)	at least 142,487 individuals	NA	9p22.1	NR	rs146551666-G	0.96	1E-8		0.06	[0.04-0.08] unit increase	NR [9704453]	N
727	chr9	18657557	18657558	rs776776	24529757	Xie T	2014-01-17	Neurobiol Aging	Genome-wide association study combining pathway analysis for typical sporadic amyotrophic lateral sclerosis in Chinese Han populations.	Amyotrophic lateral sclerosis (sporadic)	250 Han Chinese ancestry cases, 250 Han Chinese ancestry controls	NA	9p22.1	ADAMTSL1	rs776776-?		2E-6				Illumina [859311]	N
727	chr9	18732764	18732785	rs753303162	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	9p22.1	ADAMTSL1	rs753303162-A	0.0016	6E-6		0.6226	[0.35-0.89] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
728	chr9	18754210	18754211	rs10733356	32902719	Hebbar P	2020-09-09	Hum Genet	Genome-wide landscape establishes novel association signals for metabolic traits in the Arab population.	Systolic blood pressure	2,732 Kuwaiti ancestry individuals	NA	9p22.1	ADAMTSL1	rs10733356-?	NR	8E-7		4.934	NR unit increase	Illumina [up to 1520000] (imputed)	N
728	chr9	18761098	18761099	rs1978746	23459443	Avery CL	2013-03-05	Pharmacogenomics J	Drug-gene interactions and the search for missing heritability: a cross-sectional pharmacogenomics study of the QT interval.	QT interval (drug interaction)	33,781 European ancestry individuals	NA	9p22.1	ADAMTSL1	rs1978746-A	0.79	8E-6	(Thiazides)			Affymetrix, Illumina [~ 2500000] (imputed)	N
728	chr9	18797255	18797256	rs2289003	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	9p22.1	NR	rs2289003-?		3E-6	(SERPINE1)	0.1047	[NR] unit decrease	Illumina [NR]	N
728	chr9	18806784	18806785	rs72690583	31324189	Kim W	2019-07-19	Respir Res	DSP variants may be associated with longitudinal change in quantitative emphysema.	Emphysema annual change measurement in smokers (adjusted lung density)	4,427 European ancestry individuals, 1,158 African American individuals	NA	9p22.1	ADAMTSL1	rs72690583-T	0.01	6E-6	(EA)	0.447	[0.25-0.64] unit decrease	Illumina [NR] (imputed)	N
728	chr9	18829568	18829569	rs10963787	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Corpus callosum anterior volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	9p22.1	ADAMTSL1	rs10963787-?		2E-6				Illumina [4322238] (imputed)	N
728	chr9	18868646	18868647	rs1433830	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris color (L* coordinate)	329 South Asian ancestry individuals		9p22.1	ADAMTSL1	rs1433830-C	0.617948	5E-6		0.388065	[0.22-0.55] unit decrease	Illumina [640625] (imputed)	N
729	chr9	18890060	18890061	rs114646018	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	9p22.1	intergenic	rs114646018-A	0.001	1E-6		34.08	[3.52-329.69]	Illumina [1556551]	N
729	chr9	18907768	18907769	rs945441	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Perceived unattractiveness to mosquitoes	16,576 European ancestry individuals	NA	9p22.1	ADAMTSL1	rs945441-G	NR	7E-6		0.1812	[0.1-0.26] unit decrease	Illumina [7433384] (imputed)	N
729	chr9	18909702	18909703	rs10117672	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	9p22.1		rs10117672-?	NR	2E-10		0.012405	[0.0082-0.0166] unit increase	Affymetrix [20259828] (imputed)	N
729	chr9	18919203	18919204	rs113983136	28644415	Guenard F	2017-06-23	Nutrients	Genome-Wide Association Study of Dietary Pattern Scores.	Prudent dietary pattern	141 individuals	NA	9p22.1	ADAMTSL, SAXO1	rs113983136-?		3E-6				Illumina [2668805]	N
729	chr9	18930221	18930222	rs1571228	23144319	Lee Y	2012-11-08	Carcinogenesis	Prognostic implications of genetic variants in advanced non-small cell lung cancer: a genome-wide association study.	Non-small cell lung cancer	348 Korean ancestry cases	NA	9p22.1	FAM154A	rs1571228-?	NR	2E-7	(Dominant model)			Affymetrix [271817]	N
729	chr9	18966591	18966592	rs7864387	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	9p22.1		rs7864387-?	NR	3E-8				NR [~ 8900000] (imputed)	N
729	chr9	18969026	18969026	rs4007663	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	9p22.1		rs4007663-?	NR	3E-9		0.0333675	[0.022-0.045] unit increase	Affymetrix [20259828] (imputed)	N
730	chr9	19023612	19023613	rs10757022	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9p22.1		rs10757022-?	NR	2E-15				NR [~ 8900000] (imputed)	N
730	chr9	19032906	19032907	rs17810415	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	9p22.1	NR	rs17810415-G	0.20026299999999997	7E-9		0.00970654	[0.0065-0.0129] unit increase	Affymetrix [16578495] (imputed)	N
730	chr9	19036252	19036254	rs111738508	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	9p22.1		rs111738508-T	NR	1E-10		0.0151	[0.011-0.02] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
730	chr9	19037532	19037533	rs10811106	33560138	Dube MP	2021-02-09	Circ Genom Precis Med	Pharmacogenomics of the Efficacy and Safety of Colchicine in COLCOT.	Cardiovascular event in colchicine-treated recent myocardial infarction (time to event)	30 European ancestry male cases, 546 European ancestry male controls	NA	9p22.1	SAXO1	rs10811106-?	NR	6E-8				Illumina [4455743] (imputed)	N
730	chr9	19051317	19051318	rs4394488	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	9p22.1	NR	rs4394488-T	0.611052	3E-20		0.018171	[0.014-0.022] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
730	chr9	19052436	19052437	rs1154672	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9p22.1	NR	rs1154672-G	0.345864	2E-14				Affymetrix, Illumina [24588908] (imputed)	N
730	chr9	19052436	19052437	rs1154672	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	9p22.1	NR	rs1154672-G	0.38863	3E-16		0.015157	[0.012-0.019] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
730	chr9	19055964	19055965	rs1048169	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer (early onset)	6,988 European ancestry cases, 44,256 European ancestry controls	NA	9p22.1	HAUS6	rs1048169-C	NR	8E-7		1.1	[NR]	Illumina [20370935] (imputed)	N
730	chr9	19055964	19055965	rs1048169	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	9p22.1	HAUS6	rs1048169-C	0.38	7E-14		1.06	[1.05-1.08]	Illumina [20370935] (imputed)	N
730	chr9	19057550	19057551	rs4977492	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	9p22.1	HAUS6	rs4977492-T	0.6616	4E-11		0.1209	[0.085-0.157] unit decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
730	chr9	19059677	19059678	rs4977494	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Keratinocyte cancer (MTAG)	at least 18,538 European ancestry cases, at least 340,302 European ancestry controls	NA	9p22.1	SCARNA8	rs4977494-A	NR	2E-7		1.0638298	[1.04-1.09]	Affymetrix [7600000] (imputed)	N
730	chr9	19059864	19059865	rs60269255	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Basal cell carcinoma	31,787 European ancestry cases, 619,351 European ancestry controls	NA	9p22.1	SCARNA8	rs60269255-C	0.125485	2E-8		1.07	[1.05-1.09]	Affymetrix, Illumina [up to 9061544] (imputed)	N
730	chr9	19064128	19064129	rs13287517	33290408	Ray D	2020-12-08	PLoS Genet	A powerful method for pleiotropic analysis under composite null hypothesis identifies novel shared loci between Type 2 Diabetes and Prostate Cancer.	Type 2 diabetes or prostate cancer (pleiotropy)	62,892 European ancestry T2D cases, 79,194 European ancestry PrCa cases, 659,536 European ancestry controls	NA	9p22.1	HAUS6	rs13287517-C	0.39	1E-14				Illumina [5041948] (imputed)	N
730	chr9	19067832	19067833	rs7022807	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	9p22.1	HAUS6	rs7022807-G	0.397874	2E-18		0.02019023	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
730	chr9	19067832	19067833	rs7022807	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	9p22.1	HAUS6	rs7022807-G	0.4014	3E-10		1.04	[1.03-1.05]	Affymetrix, Illumina [~ 27000000] (imputed)	N
730	chr9	19072245	19072246	rs10122990	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	9p22.1	NR	rs10122990-C	NR	5E-15		1.055	[1.04-1.07]	Affymetrix, Illumina [29235255] (imputed)	N
730	chr9	19072245	19072246	rs10122990	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	9p22.1	HAUS6	rs10122990-C	0.384483	7E-13		0.016491069	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
730	chr9	19074537	19074538	rs12380322	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	9p22.1	NR	rs12380322-G	0.3922	2E-13		0.0295	[0.022-0.037] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
730	chr9	19080351	19080352	rs10963942	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	9p22.1	NR	rs10963942-G	0.3965	4E-15		0.0371	[0.028-0.046] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
730	chr9	19084633	19084634	rs113235811	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Testosterone levels	310,461 European ancestry individuals, 5,453 African ancestry individuals, 6,680 South Asian ancestry individuals	NA	9p22.1	NR	rs113235811-C	NR	4E-10		0.0183	[0.013-0.024] unit increase	Affymetrix [9000000] (imputed)	N
730	chr9	19098264	19098265	rs7026281	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9p22.1	NR	rs7026281-A	0.602038	6E-18				Affymetrix, Illumina [17210439] (imputed)	N
730	chr9	19103773	19103774	rs112107457	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	9p22.1	NR	rs112107457-T	0.13234800000000002	1E-10		0.0288655	[0.02-0.038] unit increase	Affymetrix [16577313] (imputed)	N
730	chr9	19105637	19105638	rs77574378	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	9p22.1	HAUS6	rs77574378-T	0.8465	7E-11		0.1771	[0.12-0.23] mmHg decrease	Affymetrix [NR] (imputed)	N
730	chr9	19111186	19111187	rs111791351	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	9p22.1	PLIN2	rs111791351-T	0.1487	4E-8		0.2053	[0.13-0.28] mmHg increase	Affymetrix [NR] (imputed)	N
730	chr9	19126982	19126983	rs189086340	31659325	Malhotra R	2019-10-28	Nat Genet	HDAC9 is implicated in atherosclerotic aortic calcification and affects vascular smooth muscle cell phenotype.	Abdominal aortic calcification levels	9,417 European ancestry individuals	1,595 African American individuals, 496 Hispanic or Latin American individuals	9p22.1	PLIN2	rs189086340-A	0.022	8E-7	(EA)	4.92	z score increase	Affymetrix, Illumina [9000000] (imputed)	N
731	chr9	19139569	19139570	rs10963978	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	9p22.1	NR	rs10963978-G	NR	2E-6	(GEE model)	1.1215	[0.66-1.58] unit decrease	NR [NR] (imputed)	N
731	chr9	19212559	19212560	rs13300056	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	9p22.1	intergenic	rs13300056-T	0.0825	1E-9		0.0392	[0.027-0.052] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
731	chr9	19213633	19213634	rs141215807	23319000	Luykx JJ	2013-01-15	Mol Psychiatry	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA)	up to 398 European ancestry individuals	NA	9p22.1	DQ572382	rs141215807-T	NR	9E-6		0.222	unit increase	Illumina [5767231] (imputed)	N
731	chr9	19217420	19217421	rs13288021	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	9p22.1	intergenic	rs13288021-T	0.0819	2E-10		0.0408	[0.028-0.053] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
731	chr9	19217779	19217780	rs16937390	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	9p22.1		rs16937390-C	0.0769840000000001	2E-11		0.027824325	[0.02-0.036] unit increase	Affymetrix [93095623] (imputed)	N
731	chr9	19217779	19217780	rs16937390	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	9p22.1	NR	rs16937390-T	0.921714	2E-12		0.024753	[0.018-0.032] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
731	chr9	19219778	19219779	rs72698368	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	9p22.1		rs72698368-?	NR	4E-9				NR [~ 8900000] (imputed)	N
731	chr9	19257056	19257057	rs10124723	32141789	Theriault S	2019-10-15	Circ Genom Precis Med	Genetic Association Analyses Highlight IL6, ALPL, and NAV1 As 3 New Susceptibility Genes Underlying Calcific Aortic Valve Stenosis.	Calcific aortic valve stenosis	5,115 European ancestry cases, 354,072 European ancestry controls	NA	9p22.1	DENND4C	rs10124723-G	0.429	4E-6		1.13	[1.08-1.18]	Affymetrix, Illumina [8000000] (imputed)	N
731	chr9	19259290	19259291	rs7865867	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls, 33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	9p22.1		rs7865867-A	NR	3E-9		0.0346	[0.023-0.046] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
731	chr9	19260960	19260961	rs111654000	34446064	Cade BE	2021-08-26	Genome Med	Whole-genome association analyses of sleep-disordered breathing phenotypes in the NHLBI TOPMed program.	Obstructive sleep apnea trait (apnea hypopnea index)	1,942 African American individuals	NA	9p22.1		rs111654000-A	NR	3E-8		11.942	[7.73-16.15] unit decrease	Affymetrix, Illumina [22105437] (imputed)	N
732	chr9	19313912	19313913	rs34150222	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	9p22.1	DENND4C	rs34150222-?	NR	2E-12		0.034	[0.026-0.042] unit increase	Affymetrix [5701386] (imputed)	N
732	chr9	19322510	19322511	rs34631598	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls	NA	9p22.1	DENND4C	rs34631598-A	0.0768843	3E-9		0.06213113	[0.042-0.083] unit increase	Affymetrix [7288503] (imputed)	N
732	chr9	19334014	19334015	rs2803122	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Pulse pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	9p22.1	chr9mb19	rs2803122-T	0.434754262	9E-8		0.1682	[0.11-0.23] unit increase	Affymetrix [~ 9800000] (imputed)	N
732	chr9	19357229	19357230	rs36178701	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	9p22.1		rs36178701-G	NR	6E-11		0.0246	[0.017-0.032] unit increase	Affymetrix, Illumina [20536134] (imputed)	N
732	chr9	19357229	19357230	rs36178701	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	9p22.1		rs36178701-G	NR	1E-8		0.0219	[0.014-0.03] unit increase	Affymetrix, Illumina [20521447] (imputed)	N
732	chr9	19360565	19360566	rs75572195	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	9p22.1	DENND4C	rs75572195-G	0.906129	5E-12		0.0225924	[0.016-0.029] unit decrease	Affymetrix [NR] (imputed)	N
732	chr9	19372989	19372990	rs1129101	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	9p22.1		rs1129101-A	NR	5E-9		0.0122	[0.0081-0.0163] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
732	chr9	19376254	19376255	rs67710536	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	Total cholesterol levels	up to 237,050 European ancestry individuals, up to 16,935 African ancestry individuals, up to 30,468 South Asian ancestry individuals, up to 8,287 East Asian ancestry individuals, 5,084 Hispanic individuals	up to 286,268 European and unknown ancestry individuals	9p22.1	RPS6	rs67710536-C	NR	5E-21		0.028468352	[0.023-0.034] unit increase	Illumina [242289]	N
732	chr9	19376254	19376255	rs67710536	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	Total cholesterol levels	up to 237,050 European ancestry individuals	NA	9p22.1	NR	rs67710536-C	0.082	7E-12		0.038	unit increase	Illumina [242289]	N
732	chr9	19376254	19376255	rs67710536	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	Low density lipoprotein cholesterol levels	up to 237,050 European ancestry individuals	NA	9p22.1	NR	rs67710536-C	0.083	1E-10		0.037	unit increase	Illumina [242289]	N
732	chr9	19376257	19376258	rs67906804	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	9p22.1		rs67906804-?	NR	7E-9				NR [~ 8900000] (imputed)	N
732	chr9	19390003	19390004	rs12000236	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	9p22.1		rs12000236-G	NR	3E-12		0.0163	[0.012-0.021] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
732	chr9	19390003	19390004	rs12000236	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	9p22.1		rs12000236-G	0.279354	7E-10		0.0153519	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
732	chr9	19390003	19390004	rs12000236	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	9p22.1		rs12000236-G	0.279334	1E-13		0.018297704	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
732	chr9	19390003	19390004	rs12000236	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9p22.1	NR	rs12000236-G	0.257241	2E-14				Affymetrix, Illumina [24246363] (imputed)	N
732	chr9	19390003	19390004	rs12000236	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	9p22.1	NR	rs12000236-G	0.279162	2E-14		0.015619	[0.012-0.02] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
732	chr9	19390003	19390004	rs12000236	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9p22.1	NR	rs12000236-G	0.255595	2E-16				Affymetrix, Illumina [20825802] (imputed)	N
732	chr9	19390003	19390004	rs12000236	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	9p22.1	NR	rs12000236-G	0.279374	4E-16		0.017528	[0.013-0.022] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
732	chr9	19390003	19390004	rs12000236	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	9p22.1		rs12000236-?	NR	5E-16				NR [~ 8900000] (imputed)	N
733	chr9	19452989	19452990	rs7022373	34815687	Wu SE	2021-11-16	J Inflamm Res	A Genome-Wide Association Study Identifies Novel Risk Loci for Sarcopenia in a Taiwanese Population.	Low hand grip strength	34 Taiwanese ancestry cases, 62 Taiwanese ancestry controls	NA	9p22.1		rs7022373-?	0.1875	8E-8		7.336		Affymetrix [NR]	N
733	chr9	19456097	19456098	rs7038675	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9p22.1	NR	rs7038675-T	0.344226	7E-11				Affymetrix, Illumina [22063850] (imputed)	N
733	chr9	19457611	19457611	rs67500807	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	9p22.1	NR	rs67500807-TG	0.3727	4E-6	(EA)	0.0396	[0.023-0.056] unit increase	Illumina [~ 11800000] (imputed)	N
733	chr9	19461192	19461193	rs12349140	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	9p22.1	SLC24A2	rs12349140-?	NR	8E-6	(asymmetric dimethylarginine)	0.1708516	[0.096-0.246] unit decrease	Affymetrix [at least 2500000] (imputed)	N
733	chr9	19469845	19469846	rs11790131	27339598	Ulveling D	2016-07-29	Hepatology	A new 3p25 locus is associated with liver fibrosis progression in human immunodeficiency virus/hepatitis C virus-coinfected patients.	Liver fibrosis severity in HIV/hepatitis C co-infection	289 French ancestry cases	NA	9p22.1	MAP1LC3BP1	rs11790131-?		9E-9		0.6	[0.4-0.8] unit increase	Illumina [8426597] (imputed)	N
733	chr9	19485091	19485092	rs16937559	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	9p22.1	NR	rs16937559-?	NR	7E-7				Affymetrix [NR]	N
734	chr9	19530882	19530883	rs1887489	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	9p22.1	NR	rs1887489-?	NR	6E-13				Affymetrix [NR]	N
734	chr9	19555376	19555377	rs16937601	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9p22.1	NR	rs16937601-T	0.02613	6E-9	(MYO1B)	0.1207	NR unit increase	Illumina [1671387] (imputed)	N
734	chr9	19573599	19573600	rs10964221	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	9p22.1	Intergenic	rs10964221-T	0.7903	4E-10	(MTAG)	0.0138	[0.0095-0.0181] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
734	chr9	19576948	19576949	rs2383101	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	9p22.1	Intergenic	rs2383101-T	0.2096	9E-9		0.0138	[0.0091-0.0185] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
734	chr9	19579426	19579427	rs3780215	23517042	Melen E	2013-04-01	Clin Exp Allergy	Genome-wide association study of body mass index in 23 000 individuals with and without asthma.	Body mass index in asthmatics	1,881 European ancestry children, 810 children, 2,643 European ancestry adult individuals, 817 adult individuals	979 European ancestry children, 921 Hispanic children, 120 children	9p22.1	SLC24A2	rs3780215-A	0.20	7E-6	(adult)			Illumina [up to 536451]	N
734	chr9	19586966	19586967	rs117322666	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Gamma glutamyl transferase levels in low alcohol consumption	8,716 individuals	NA	9p22.1	NR	rs117322666-?	NR	8E-7		0.0709	[0.043-0.099] unit increase	Illumina [~ 7800000] (imputed)	N
734	chr9	19649737	19649738	rs7870850	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	9p22.1	NR	rs7870850-?	NR	7E-7				Affymetrix [NR]	N
735	chr9	19664080	19664081	rs4258076	19734545	Need AC	2009-09-04	Hum Mol Genet	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA	9p22.1	SLC24A2	rs4258076-?	0.2668	4E-6	(VRM)			Illumina [475971]	N
735	chr9	19669932	19669933	rs79818403	33381925	Buchanan VL	2020-12-30	Pediatr Obes	Genome-wide association study identifying novel variant for fasting insulin and allelic heterogeneity in known glycemic loci in Chilean adolescents: The Santiago Longitudinal Study.	Fasting glucose	543 Chilean individuals	NA	9p22.1	SLC24A2	rs79818403-T	0.01	1E-6		14.97	[8.93-21.01] unit increase	Illumina [NR] (imputed)	N
735	chr9	19680855	19680856	rs201026432	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9p22.1	NR	rs201026432-A	0.0122	1E-8	(SHMT2)	0.7124	NR unit increase	Illumina [1671387] (imputed)	N
735	chr9	19695637	19695638	rs7036637	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	9p22.1	SLC24A2	rs7036637-C	0.372	3E-8		0.0068	[0.0044-0.0092] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
735	chr9	19695637	19695638	rs7036637	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	9p22.1	SLC24A2	rs7036637-C	0.372	3E-8		0.01113186	[0.0072-0.0151] unit decrease	Illumina [9339358] (imputed)	N
737	chr9	19943272	19943272	rs34159223	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Word reading	3,468 European ancestry individuals	NA	9p21.3	Intergenic	rs34159223-C	0.662637143	3E-6		0.160826	unit increase	Illumina [6969139] (imputed)	N
737	chr9	19943272	19943272	rs34159223	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Non-word reading	3,409 European ancestry individuals	NA	9p21.3	Intergenic	rs34159223-C	0.662637143	3E-6		0.149519	[0.087-0.212] unit increase	Illumina [6969139] (imputed)	N
737	chr9	19971060	19971061	rs12235874	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Word spelling	3,399 European ancestry individuals	NA	9p21.3	Intergenic	rs12235874-T	0.720502857	6E-6		0.139612	[0.079-0.2] unit increase	Illumina [6969139] (imputed)	N
737	chr9	19994735	19994736	rs10964378	27611488	Almoguera B	2016-09-09	Am J Respir Crit Care Med	Identification of Four Novel Loci in Asthma in European American and African American Populations.	Asthma	819 African American non-allergic asthma cases, 2,218 African American allergic asthma cases 4,360 African American controls, 808 European American non-allergic asthma cases, 1,464 European American allergic asthma cases, 11,975 European American controls	NA	9p21.3	SLC24A2	rs10964378-?		5E-6	(AA)	0.306	[0.036-0.576] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
737	chr9	20013540	20013541	rs186076999	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		9p21.3	Intergenic	rs186076999-T	0.006	7E-6	(liability model)	0.62	[0.35-0.89] unit increase	NR [19725427] (imputed)	N
737	chr9	20019021	20019022	rs767396100	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	9p21.3	RP11-378I6.3	rs767396100-T	0.0015	9E-6		0.5585	[0.31-0.8] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
737	chr9	20019021	20019022	rs767396100	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	9p21.3	RP11-378I6.3	rs767396100-T	0.0015	2E-6		0.6345	[0.37-0.9] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
737	chr9	20019021	20019022	rs767396100	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	9p21.3	RP11-378I6.3	rs767396100-T	0.0015	2E-6		0.6345	[0.37-0.9] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
737	chr9	20032152	20032153	rs7855188	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	9p21.3	SLC24A2	rs7855188-?		1E-13				Affymetrix, Illumina [NR] (imputed)	N
738	chr9	20068350	20068351	rs111364317	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	9p21.3	NR	rs111364317-?	NR	3E-6		0.313502	[0.18-0.45] unit decrease	NR [13958389] (imputed)	N
738	chr9	20098710	20098711	rs16937883	19187332	Kim SH	2009-02-01	Clin Exp Allergy	Alpha-T-catenin (CTNNA3) gene was identified as a risk variant for toluene diisocyanate-induced asthma by genome-wide association analysis.	Asthma (toluene diisocyanate-induced)	84 Korean ancestry cases, 263 Korean ancestry controls	NA	9p21.3	intergenic	rs16937883-G	0.02	7E-6		5.29	[2.41-11.61]	Affymetrix [312978]	N
738	chr9	20184330	20184331	rs4977388	29703844	van Zuydam NR	2018-04-27	Diabetes	A Genome-Wide Association Study of Diabetic Kidney Disease in Subjects With Type 2 Diabetes.	Diabetic kidney disease in type 2 diabetes (ESRD vs. no ESRD)	371 European ancestry cases with end-stage renal disease, 4,471 European ancestry cases without end-stage renal disease	1,640 European ancestry cases with end-stage renal disease, 7,803 European ancestry cases without end-stage renal disease, 877 Asian cases with end-stage renal disease, 4,510 Asian cases without end-stage renal disease, 20 Chinese ancestry cases with end-stage renal disease, 398 Chinese ancestry cases without end-stage renal disease	9p21.3	NR	rs4977388-?		3E-6	(EA)	1.87	[1.18-2.94]	Affymetrix, Illumina [up to 9343778] (imputed)	N
739	chr9	20207962	20207963	rs78096325	29907492	Nakahara S	2018-06-12	Schizophr Res	Polygenic risk score, genome-wide association, and gene set analyses of cognitive domain deficits in schizophrenia.	Verbal memory	2 Alaskan native ancestry schizophrenia cases, 18 Asian ancestry schizophrenia cases, 20 African American schizophrenia cases, 1 Native Hawaiian ancestry schizophrenia cases, 86 European ancestry schizophrenia cases, 2 Alaskan native ancestry controls, 10 Asian ancestry controls, 17 African American controls, 1 Native Hawaiian ancestry controls, 106 European ancestry controls	NA	9p21.3	intergenic	rs78096325-A		3E-7		1.2	[NR] unit decrease	Illumina [NR] (imputed)	N
739	chr9	20212040	20212041	rs6475417	30116032	Erlangsen A	2018-08-16	Mol Psychiatry	Genetics of suicide attempts in individuals with and without mental disorders: a population-based genome-wide association study.	Affective disorder and suicide attempts	4,302 European ancestry cases, 13,294 European ancestry population controls	NA	9p21.3		rs6475417-G	NR	7E-7		1.1434	[1.04-1.25]	Illumina [11601089] (imputed)	N
739	chr9	20228465	20228466	rs117089718	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Pro-interleukin-16 levels	21,758 European ancestry individuals	9,173 individuals	9p21.3		rs117089718-T	0.97	2E-7		0.1425	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
739	chr9	20235003	20235004	rs4977397	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	9p21.3	SLC24A2, MLLT3	rs4977397-A	0.57	9E-9		1.04	[1.03-1.06]	Affymetrix, Illumina [up to 12149979] (imputed)	N
739	chr9	20241068	20241069	rs7867635	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	9p21.3	NR	rs7867635-C	0.4106	4E-9		0.037	[0.025-0.049] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
739	chr9	20241068	20241069	rs7867635	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	9p21.3	FOCAD	rs7867635-C	0.4123	4E-8		1.04	[1.02-1.05]	Affymetrix, Illumina [~ 27000000] (imputed)	N
739	chr9	20266245	20266246	rs7853772	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Rapid automised naming of pictures	2,562 European ancestry individuals	NA	9p21.3	Intergenic	rs7853772-G	0.7385	8E-6		0.160117	[0.09-0.231] unit increase	Illumina [6952813] (imputed)	N
739	chr9	20271491	20271492	rs1456961	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9p21.3	NR	rs1456961-T	0.05401	2E-8	(TTN)	0.6167	NR unit increase	Illumina [1671387] (imputed)	N
739	chr9	20271491	20271492	rs1456961	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9p21.3	NR	rs1456961-T	0.05401	1E-8	(EML4)	0.05162	NR unit decrease	Illumina [1671387] (imputed)	N
739	chr9	20274535	20274536	rs12004915	34025683	Kanoni S	2021-05-07	Front Immunol	Nutrigenetic Interactions Might Modulate the Antioxidant and Anti-Inflammatory Status in Mastiha-Supplemented Patients With NAFLD.	Glutathione peroxidase in non-alcoholic fatty liver disease x mastiha supplementation interaction	35 European or unknown ancestry mastiha exposed individuals, 52 European or unknown ancestry unexposed individuals	NA	9p21.3	MLLT3	rs12004915-C	0.77	1E-9		1.602	[1.08-2.12] unit increase	Illumina [10307610] (imputed)	N
739	chr9	20300842	20300843	rs10122939	34411106	Liu C	2021-08-19	PLoS Genet	Genome scans of facial features in East Africans and cross-population comparisons reveal novel associations.	Facial morphology (segment 48)	2,595 Tanzanian ancestry individuals	NA	9p21.3		rs10122939-?	NR	3E-10				Illumina [NR] (imputed)	N
740	chr9	20368547	20368548	rs73430715	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9p21.3	NR	rs73430715-T	0.0122	5E-10	(HNRNPH3)	0.1249	NR unit increase	Illumina [1671387] (imputed)	N
741	chr9	20497141	20497142	rs6475448	26083242	Dahlin A	2015-06-17	PLoS One	Genome-Wide Association Study Identifies Novel Pharmacogenomic Loci For Therapeutic Response to Montelukast in Asthma.	Response to montelukast in asthma (change in FEV1)	88 European ancestry cases, 10 African ancestry cases, 35 Asian ancestry cases	101 European ancestry cases, 33 African ancestry cases, 50 Asian ancestry cases	9p21.3	MLLT3	rs6475448-A	NR	2E-9		129.0	[NR] mL increase (CLIC cohort)	Illumina [532264]	N
741	chr9	20551459	20551460	rs17685306	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	9p21.3	MLLT3	rs17685306-G	0.210542	2E-9		0.016267564	[0.011-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
741	chr9	20551459	20551460	rs17685306	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	9p21.3	MLLT3	rs17685306-G	0.210555	1E-9		0.016490202	[0.011-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
741	chr9	20551459	20551460	rs17685306	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	9p21.3	NR	rs17685306-G	0.210933	2E-10		0.014426	[0.01-0.0189] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
741	chr9	20551459	20551460	rs17685306	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	9p21.3	NR	rs17685306-G	0.210988	4E-10		0.014206	[0.0098-0.0186] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
741	chr9	20554582	20554583	rs12377027	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	9p21.3	MLLT3	rs12377027-A	0.8182	7E-13		0.0026	[0.0016-0.0036] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
741	chr9	20559726	20559727	rs10964603	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	9p21.3	MLLT3	rs10964603-T	0.7822	2E-13		0.0025	[0.0017-0.0033] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
741	chr9	20569813	20569814	rs10964620	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	9p21.3	MLLT3	rs10964620-A	0.667288	2E-15		0.019253572	[0.014-0.024] unit increase	Affymetrix [93095623] (imputed)	N
741	chr9	20572180	20572181	rs4413866	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	9p21.3	NR	rs4413866-?	NR	8E-6		0.0077956	[0.0044-0.0112] unit decrease	Affymetrix [805426] (imputed)	N
741	chr9	20576824	20576825	rs576124561	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	9p21.3	MLLT3	rs576124561-A	0.00324400000000002	1E-9		0.12743653	[0.086-0.169] unit increase	Affymetrix [93095623] (imputed)	N
742	chr9	20608911	20608912	rs2188230	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	9p21.3	NR	rs2188230-T	0.47	2E-8		0.0102	[0.0066-0.0138] unit increase	NR [NR]	N
742	chr9	20612515	20612516	rs2780841	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	9p21.3	MLLT3	rs2780841-T	0.3134	2E-10		0.1843	[0.13-0.24] mmHg decrease	Affymetrix [NR] (imputed)	N
742	chr9	20620291	20620292	rs2780834	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	9p21.3		rs2780834-G	0.33	1E-10		6.41	z score increase	Affymetrix [9061022] (imputed)	N
742	chr9	20620574	20620575	rs2073855	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	9p21.3		rs2073855-A	NR	1E-8		0.0126	[0.0083-0.0169] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
742	chr9	20626204	20626205	rs2383140	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	9p21.3		rs2383140-G	0.49	4E-9		5.88	z score increase	Affymetrix [9061022] (imputed)	N
742	chr9	20626204	20626205	rs2383140	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	9p21.3	NR	rs2383140-G	0.4852	2E-10				NR [9056863] (imputed)	N
742	chr9	20641039	20641040	rs148211240	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	9p21.3	Intergenic	rs148211240-G	NR	4E-6	(women)	0.128899	[0.074-0.184] unit decrease	Illumina [13520550] (imputed)	N
742	chr9	20641039	20641040	rs148211240	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	9p21.3	Intergenic	rs148211240-G	NR	3E-6		0.0920269	[0.054-0.13] unit decrease	Illumina [13520550] (imputed)	N
742	chr9	20649014	20649015	rs117312677	29703947	Jawinski P	2018-04-27	Mol Psychiatry	Human brain arousal in the resting state: a genome-wide association study.	Resting-state electroencephalogram vigilance	1,877 European ancestry individuals	NA	9p21.3	FOCAD	rs117312677-G	0.978	5E-6	(Mean vigilance)	0.4947	[0.28-0.71] unit increase	Affymetrix [8042262] (imputed)	N
742	chr9	20662702	20662703	rs7847880	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	9p21.3	FOCAD	rs7847880-C	0.8431	2E-6		1.04	[1.03-1.06]	Affymetrix, Illumina [~ 27000000] (imputed)	N
742	chr9	20676453	20676454	rs7867822	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	9p21.3	NR	rs7867822-G	0.673	6E-11		0.0075074	[0.0053-0.0098] unit decrease	NR [9732723] (imputed)	N
742	chr9	20676453	20676454	rs7867822	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	9p21.3	NR	rs7867822-G	0.673	3E-8		0.015097027	[0.0098-0.0204] unit decrease	NR [~ 10000000] (imputed)	N
743	chr9	20747069	20747070	rs7043296	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Medial orbital frontal cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	9p21.3	FOCAD	rs7043296-?		8E-6				Illumina [4322238] (imputed)	N
743	chr9	20790621	20790622	rs2150999	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	9p21.3	NR	rs2150999-C	0.5367	6E-10		0.0243	[0.017-0.032] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
743	chr9	20795734	20795735	rs10964704	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	9p21.3		rs10964704-?	NR	5E-14				NR [~ 8900000] (imputed)	N
743	chr9	20805088	20805089	rs17759355	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	9p21.3	NR	rs17759355-T	0.214284	7E-15		0.017505	[0.013-0.022] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
743	chr9	20805269	20805270	rs10811408	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	9p21.3		rs10811408-T	0.777	4E-12		0.09	[0.07-0.12] % increase	Affymetrix [NR] (imputed)	N
743	chr9	20805269	20805270	rs10811408	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	9p21.3	FOCAD	rs10811408-G	0.223495	6E-13		0.020049	[0.015-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
743	chr9	20805269	20805270	rs10811408	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9p21.3	NR	rs10811408-G	0.214633	2E-15				Affymetrix, Illumina [24332387] (imputed)	N
743	chr9	20805269	20805270	rs10811408	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9p21.3	NR	rs10811408-G	0.21542	4E-21				Affymetrix, Illumina [24246363] (imputed)	N
743	chr9	20805269	20805270	rs10811408	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	9p21.3	NR	rs10811408-G	0.223957	2E-20		0.02016	[0.016-0.024] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
743	chr9	20828704	20828705	rs7388989	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	9p21.3	NR	rs7388989-A	0.294	1E-9	(IFNalpha_STAT4_of_CD56pCD16p)			Illumina [5084123] (imputed)	N
743	chr9	20831381	20831382	rs10811412	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9p21.3	NR	rs10811412-C	0.245935	2E-17				Affymetrix, Illumina [20825802] (imputed)	N
743	chr9	20831511	20831512	rs10811413	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	9p21.3	FOCAD	rs10811413-G	0.25638	3E-12		0.017633643	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
743	chr9	20831511	20831512	rs10811413	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	9p21.3	NR	rs10811413-G	0.257175	5E-17		0.018477	[0.014-0.023] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
743	chr9	20832094	20832095	rs4977760	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	9p21.3	NR	rs4977760-T	0.349	2E-8	(IFNalpha_STAT4_of_CD56brightCD16n)			Illumina [5084123] (imputed)	N
743	chr9	20833243	20833244	rs10811414	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	9p21.3		rs10811414-G	NR	2E-8		0.013	[0.0085-0.0175] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
743	chr9	20839647	20839648	rs138879113	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	9p21.3	FOCAD	rs138879113-A	0.220687	5E-10		0.016540088	[0.011-0.022] unit increase	Affymetrix [93095623] (imputed)	N
744	chr9	20841221	20841222	rs12338491	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	9p21.3	NR	rs12338491-T	0.242316	1E-10		0.014194	[0.0099-0.0185] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
744	chr9	20844430	20844431	rs76495380	24951543	Liao J	2014-06-20	Hum Mol Genet	Meta-analysis of genome-wide association studies in multiethnic Asians identifies two loci for age-related nuclear cataract.	Age-related nuclear cataracts	2,369 Malay ancestry individuals, 2,200 Indian ancestry individuals, 2,571 Chinese ancestry individuals	NA	9p21.3	FOCAD	rs76495380-T	NR	2E-7	(Fixed effect)	0.14	[0.081-0.199] unit increase	Illumina [4736131] (imputed)	N
744	chr9	20879300	20879301	rs10964747	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	9p21.3		rs10964747-A	NR	2E-12		0.0165	[0.012-0.021] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
744	chr9	20890315	20890316	rs12379622	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	9p21.3		rs12379622-?	NR	2E-11				NR [~ 8900000] (imputed)	N
744	chr9	20896914	20896915	rs7034513	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	9p21.3		rs7034513-G	NR	8E-12		0.0138	[0.0099-0.0177] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
744	chr9	20908512	20908513	rs2383162	31372216	Haaland OA	2019-06-24	F1000Res	A genome-wide scan of cleft lip triads identifies parent-of-origin interaction effects between ANK3 and maternal smoking, and between ARHGEF10 and alcohol consumption.	Cleft lip with or without cleft palate x maternal periconceptional smoking interaction (parent of origin effect)	825 European ancestry case-parent duos or trios, 1,024 Asian ancestry case-parent duos or trios, 59 case-parent duos or trios	NA	9p21.3	FOCAD	rs2383162-?	NR	9E-6		2.73	[1.75-4.24]	NR [341191]	N
744	chr9	20920867	20920868	rs201666051	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	9p21.3	FOCAD	rs201666051-C	0.618198	1E-8		0.00824182	[0.0054-0.0111] unit decrease	Affymetrix [12370749]	N
744	chr9	20923617	20923618	rs7044447	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	9p21.3	NR	rs7044447-G	0.294	2E-9	(IFNalpha_STAT4_of_CD56pCD16p)			Illumina [5084123] (imputed)	N
744	chr9	20962281	20962282	rs10811438	33568662	Dashti HS	2021-02-10	Nat Commun	Genetic determinants of daytime napping and effects on cardiometabolic health.	Daytime nap	452,633 European ancestry individuals	541,333 European ancestry individuals	9p21.3	FOCAD	rs10811438-G		8E-10		0.0053	[0.0035-0.0071] unit increase	Affymetrix [13304133] (imputed)	N
745	chr9	21005827	21005828	rs116873518	29555444	Hamer MA	2018-03-16	J Invest Dermatol	Facial Wrinkles in Europeans: a Genome-Wide Association Study.	Facial wrinkles	3,513 north-western European ancestry individuals	599 north-western European ancestry individuals	9p21.3	NR	rs116873518-C	0.02	3E-6		4.64	[NR] z score decrease	Illumina [9009554] (imputed)	N
745	chr9	21008376	21008377	rs2275882	30583798	Bovijn J	2018-12-21	Am J Hum Genet	GWAS Identifies Risk Locus for Erectile Dysfunction and Implicates Hypothalamic Neurobiology and Diabetes in Etiology.	Erectile dysfunction	6,175 European ancestry male cases, 217,630 European ancestry male controls	NA	9p21.3	PTPLAD2, KIAA1797	rs2275882-?	NR	7E-6				Affymetrix, Illumina [at least 807411] (imputed)	N
745	chr9	21014002	21014003	rs10964794	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	9p21.3	NR	rs10964794-A	0.114	6E-7	(IFNalpha_STAT1_of_Monocytes)			Illumina [5084123] (imputed)	N
745	chr9	21014627	21014628	rs12551341	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	9p21.3	NR	rs12551341-C	0.277	4E-9	(IFNalpha_STAT4_of_CD56brightCD16n)			Illumina [5084123] (imputed)	N
745	chr9	21035306	21035307	rs7867456	24144296	Cheng CY	2013-08-08	Am J Hum Genet	Nine loci for ocular axial length identified through genome-wide association studies, including shared loci with refractive error.	Axial length	12,531 European ancestry individuals	8,216 Asian ancestry individuals	9p21.3	PTPLAD2, KIAA1797, IFNB1	rs7867456-T	0.1789	9E-6		0.1497	[0.084-0.216] unit increase	Illumina [2500000] (imputed)	N
746	chr9	21114966	21114967	rs1424858	33223526	Hong S	2020-11-22	Transl Psychiatry	Genome-wide association study of Alzheimer's disease CSF biomarkers in the EMIF-AD Multimodal Biomarker Discovery dataset.	Central cerebrospinal fluid amyloid beta 42 to 40 ratio	677 European ancestry individuals	NA	9p21.3		rs1424858-C	0.747	7E-6		0.045	[0.025-0.065] unit decrease	Illumina [7778465] (imputed)	N
746	chr9	21159037	21159038	rs143138242	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9p21.3		rs143138242-?	NR	4E-8				NR [~ 8900000] (imputed)	N
746	chr9	21167464	21167465	rs7047299	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	9p21.3	IFNA21	rs7047299-A	0.56	2E-8		1.07	[1.06-1.09]	Illumina [at least 560000] (imputed)	N
746	chr9	21172501	21172502	rs118084576	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	CTACK levels	3,631 Finnish ancestry individuals	NA	9p21.3	NR	rs118084576-G	NR	7E-6		0.5544	[0.31-0.8] SD units decrease	NR [10700000] (imputed)	N
746	chr9	21189643	21189644	rs62558981	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	9p21.3	NR	rs62558981-T	0.063	1E-5	(IFNalpha_STAT1_of_Monocytes)			Illumina [5084123] (imputed)	N
746	chr9	21228422	21228423	rs4978037	33536424	Wang YF	2021-02-03	Nat Commun	Identification of 38 novel loci for systemic lupus erythematosus and genetic heterogeneity between ancestral groups.	Systemic lupus erythematosus	4,222 Han Chinese ancestry cases, 8,431 Han Chinese ancestry controls, 4,576 European ancestry cases, 8,039 European ancestry controls	NA	9p21.3	IFNA17	rs4978037-C	NR	6E-8		1.12	[1.08-1.16]	Illumina [NR] (imputed)	N
747	chr9	21255048	21255049	rs10811516	29229094	Condreay L	2017-10-26	Respir Med	No genetic association detected with mepolizumab efficacy in severe asthma.	Response to mepolizumab in severe asthma	820 European ancestry individuals	NA	9p21.3	IFNA14, IFNA22P	rs10811516-?	NR	1E-6				Affymetrix, Illumina [NR] (imputed)	N
747	chr9	21267086	21267087	rs7858766	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	9p21.3	IFNA22P	rs7858766-T	0.538	2E-15		1.139	[1.11-1.17]	Illumina [11270530] (imputed)	N
747	chr9	21340234	21340235	rs145072648	32349335	Lundback V	2020-04-27	Cells	Genome-Wide Association Study of Diabetogenic Adipose Morphology in the GENetics of Adipocyte Lipolysis (GENiAL) Cohort.	Adipose morphology	894 individuals	NA	9p21.3	NR	rs145072648-C	0.0126	2E-6		163.0	[97-230] unit increase	NR [9714326] (imputed)	N
747	chr9	21354065	21354066	rs74912790	26220383	Jang HW	2015-06-02	Epilepsy Res	GWAS identifies two susceptibility loci for lamotrigine-induced skin rash in patients with epilepsy.	Epilepsy and lamotrigine-induced maculopapular eruptions	34 Korean ancestry cases, 1,080 Korean ancestry healthy controls	NA	9p21.3	IFNA6	rs74912790-A	0.01	1E-9		10.7	[NR]	Affymetrix [4893794] (imputed)	N
748	chr9	21380236	21380237	rs12552330	32080893	Divers J	2020-02-20	Clin Transplant	GWAS for time to failure of kidney transplants from African American deceased donors.	Graft survival time in renal transplantation (donor effect)	532 African American donors	250 African American donors	9p21.3	PIPSL	rs12552330-?	NR	8E-7		0.61	NR unit increase	Illumina [> 13000000] (imputed)	N
748	chr9	21385452	21385453	rs142938197	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	9p21.3		rs142938197-A	NR	4E-8		0.1101	[0.071-0.149] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
748	chr9	21385452	21385453	rs142938197	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	9p21.3	IFNA2	rs142938197-A	0.00392800000000004	4E-9		0.111185275	[0.074-0.148] unit decrease	Affymetrix [93095623] (imputed)	N
748	chr9	21385452	21385453	rs142938197	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	9p21.3	IFNA2	rs142938197-A	0.00392700000000001	3E-9		0.11117004	[0.074-0.148] unit decrease	Affymetrix [93095623] (imputed)	N
748	chr9	21385452	21385453	rs142938197	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	9p21.3	IFNA2	rs142938197-A	0.00392899999999996	2E-10		0.120527476	[0.084-0.157] unit increase	Affymetrix [93095623] (imputed)	N
748	chr9	21385452	21385453	rs142938197	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	9p21.3	NR	rs142938197-C	0.996129	1E-10		0.108371	[0.076-0.141] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
748	chr9	21413673	21413674	rs75517899	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation PhenoAge acceleration	6,148 African American individuals	NA	9p21.3	NR	rs75517899-C	0.9644	5E-9		2.1084	[1.4-2.82] unit increase	Affymetrix, Illumina [12989038] (imputed)	N
748	chr9	21485848	21485849	rs10965026	30098192	Shaaban S	2018-08-01	Invest Ophthalmol Vis Sci	Genome-Wide Association Study Identifies a Susceptibility Locus for Comitant Esotropia and Suggests a Parent-of-Origin Effect.	Amblyopia	386 European ancestry cases, 1,700 European ancestry controls	45 European ancestry cases, 180 European ancestry controls	9p21.3	NR	rs10965026-C	NR	8E-6		1.42	NR	Illumina [6470615] (imputed)	N
749	chr9	21499623	21499624	rs7849420	24023261	Keller M	2013-09-10	J Lipid Res	THOC5: a novel gene involved in HDL-cholesterol metabolism.	Lipid traits	839 European ancestry individuals	up to 5,248 European ancestry individuals	9p21.3	IFNE1	rs7849420-A	0.36	1E-6	(HDL-C)	4.88	unit increase	Affymetrix [390619]	N
749	chr9	21503811	21503812	rs4977726	31271701	Thibord F	2019-07-04	J Thromb Haemost	A Genome Wide Association Study on plasma FV levels identified PLXDC2 as a new modifier of the coagulation process.	Plasma factor V levels in venous thrombosis (conditioned on rs6027)	510 European ancestry individuals	1,156 European ancestry individuals	9p21.3	MIR31HG	rs4977726-?	NR	8E-6		0.066	[0.037-0.095] unit decrease	NR [6264382] (imputed)	N
749	chr9	21559001	21559002	rs75875093	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	9p21.3	NR	rs75875093-?	NR	2E-6		0.8249	[0.51-1.14] unit increase	Illumina [at least 560000] (imputed)	N
749	chr9	21565673	21565674	rs7033598	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	9p21.3	MIR31HG, MTAP	rs7033598-?	NR	8E-26		0.7198	[0.58-0.86] unit increase	Affymetrix [11100000] (imputed)	N
749	chr9	21576590	21576591	rs9298817	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	9p21.3		rs9298817-C	NR	2E-16		0.0768	[0.059-0.095] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
749	chr9	21578616	21578617	rs10126000	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hypothyroidism	30,155 European ancestry cases, 379,986 European ancestry controls, 1,114 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	9p21.3		rs10126000-A	NR	5E-11		0.0683	[0.048-0.089] unit decrease	Affymetrix, Illumina [25801083] (imputed)	N
749	chr9	21585264	21585265	rs970987	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	9p21.3	MIR31HG	rs970987-C	0.337145	2E-16		0.07963703	[0.061-0.099] unit increase	Affymetrix [7288503] (imputed)	N
749	chr9	21585264	21585265	rs970987	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	9p21.3		rs970987-?	NR	6E-17				NR [~ 8900000] (imputed)	N
749	chr9	21585264	21585265	rs970987	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Autoimmune traits	approximately 459,000 European ancestry individuals	NA	9p21.3		rs970987-?	NR	3E-12				NR [~ 8900000] (imputed)	N
749	chr9	21589040	21589041	rs2123340	32581359	Saevarsdottir S	2020-06-24	Nature	FLT3 stop mutation increases FLT3 ligand level and risk of autoimmune thyroid disease.	Autoimmune thyroid disease	30,234 European ancestry cases, 724,172 European ancestry controls	NA	9p21.3	NR	rs2123340-G	0.359	6E-14		1.07	[NR]	Affymetrix, Illumina [42900000] (imputed)	N
750	chr9	21638722	21638723	rs116945318	30306274	Shah RL	2018-10-10	Hum Genet	Genome-wide association studies for corneal and refractive astigmatism in UK Biobank demonstrate a shared role for myopia susceptibility loci.	Refractive astigmatism	88,005 European ancestry individuals		9p21.3	KHSRPP1	rs116945318-A	0.985	8E-6		0.055	[0.031-0.079] dioptres decrease	NR [5900115] (imputed)	N
750	chr9	21667761	21667762	rs7868228	26528553	Davenport ER	2015-11-03	PLoS One	Genome-Wide Association Studies of the Human Gut Microbiota.	Gut microbiome composition (winter)	93 Hutterite individuals	NA	9p21.3	NR	rs7868228-?		3E-6	(family_Succinivibrionaceae)	0.9584754	[0.58-1.34] unit decrease	Affymetrix [211319]	N
750	chr9	21670086	21670087	rs12686364	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial squamous cell lung carcinoma	367 European ancestry cases, 31,563 European ancestry controls	NA	9p21.3	NR	rs12686364-G	0.004	6E-9		8.49	[4.12-17.49]	Illumina [7959153] (imputed)	N
750	chr9	21673858	21673859	rs184042824	31294817	Chen J	2019-07-11	Nicotine Tob Res	Genome-Wide Meta-Analyses of FTND and TTFC Phenotypes.	Time to smoke first cigarette in the morning	18,567 European ancestry individuals	10,061 European ancestry individuals	9p21.3	MIR31HG	rs184042824-C		2E-6		0.23	[0.13-0.33] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
750	chr9	21677312	21677313	rs11999970	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric bone mineral content (radius)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	9p21.3	NR	rs11999970-C	0.195	5E-7	(Males)	0.318959	[0.2-0.44] unit increase	Illumina [~ 6600000] (imputed)	N
750	chr9	21678972	21678973	rs7035284	26041818	Chesi A	2015-06-03	Hum Mol Genet	A trans-ethnic genome-wide association study identifies gender-specific loci influencing pediatric aBMD and BMC at the distal radius.	Pediatric bone mineral content (radius)	178 African American females, 159 African American males, 474 European ancestry females, 434 European ancestry males, 54 Hispanic and other ancestry females, 72 Hispanic and other ancestry males	242 European ancestry females, 239 European ancestry males	9p21.3	MTAP, MIR31HG	rs7035284-G	0.279	1E-8	(males)	0.277	[0.18-0.37] Z score increase	Illumina [7238679] (imputed)	N
750	chr9	21698288	21698289	rs141111252	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Melanoma	6,777 European ancestry cases, 410,350 European ancestry controls	NA	9p21.3		rs141111252-A	NR	7E-8		1.3846581	NR	Affymetrix [7846216] (imputed)	N
750	chr9	21706570	21706571	rs896655	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	9p21.3	intergenic	rs896655-A	0.5985	2E-12		0.04	[0.029-0.051] unit increase	NR [8041861] (imputed)	N
750	chr9	21707491	21707492	rs2004627	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-6 levels	8,189 Finnish ancestry individuals	NA	9p21.3	NR	rs2004627-C	NR	7E-6		0.0718	[0.041-0.103] SD units increase	NR [10700000] (imputed)	N
750	chr9	21711787	21711788	rs4620362	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	9p21.3		rs4620362-C	NR	3E-9		0.0125	[0.0084-0.0166] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
750	chr9	21720997	21720998	rs13301346	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Hyperopia	10,828 European ancestry hyperopia cases, 21,416 European ancestry emmetropia controls	NA	9p21.3	NR	rs13301346-?	NR	6E-6		0.307029	[0.17-0.44] unit increase	NR [13958389] (imputed)	N
750	chr9	21721060	21721061	rs12336169	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in never smokers	2,355 European ancestry cases,  7,504 European ancestry controls	NA	9p21.3	MIR31HG, MTAP	rs12336169-A	0.099654162	2E-6		1.3087158	[1.170657752-1.463055303]	Illumina [10439017] (imputed)	N
750	chr9	21746357	21746358	rs10811609	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	9p21.3	MIR31HG, MTAP	rs10811609-G	0.093085061	2E-6		1.0990928	[1.057475722-1.142347842]	Illumina [10439017] (imputed)	N
750	chr9	21747802	21747803	rs4636294	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Melanoma	3,122 White British ancestry cases, 271,708 White British ancestry controls	NA	9p21.3		rs4636294-?	NR	4E-10		1.17389	[1.12-1.22]	NR [674885]	N
750	chr9	21747802	21747803	rs4636294	19578365	Falchi M	2009-07-05	Nat Genet	Genome-wide association study identifies variants at 9p21 and 22q13 associated with development of cutaneous nevi.	Cutaneous nevi	1,524 European ancestry twins	4,107 European ancestry individuals, 3,131 European ancestry cases, 4,276 European ancestry controls	9p21.3	MTAP	rs4636294-A	0.48	3E-15		0.2	[0.13-0.27] log nevus count increase	Illumina [297108]	N
750	chr9	21753191	21753192	rs11496368	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial lung adenocarcinoma	775 European ancestry cases, 31,563 European ancestry controls	NA	9p21.3	NR	rs11496368-A	0.131	4E-6		1.48	[1.25-1.76]	Illumina [8672852] (imputed)	N
751	chr9	21780036	21780037	rs17755650	27802415	Salvi E	2016-10-31	Hypertension	Genome-Wide and Gene-Based Meta-Analyses Identify Novel Loci Influencing Blood Pressure Response to Hydrochlorothiazide.	Diastolic blood pressure response to hydrochlorothiazide in hypertension	1,739 European ancestry individuals	430 African American individuals	9p21.3	MTAP	rs17755650-T	0.9	6E-6	(EA)	1.17	[NR] mmHg increase	Affymetrix, Illumina [up to 2500000] (imputed)	N
751	chr9	21783980	21783980	rs5896952	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	9p21.3		rs5896952-CT	0.10326	8E-9		0.021323867	[0.014-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
751	chr9	21787520	21787521	rs10429489	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Non-small cell lung cancer	27,120 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	9p21.3	NR	rs10429489-A	NR	7E-10		1.11	[1.08-1.15]	NR [NR] (imputed)	N
751	chr9	21787520	21787521	rs10429489	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Lung adenocarcinoma	15,581 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	9p21.3	NR	rs10429489-A	NR	4E-13		1.16	[1.11-1.20]	NR [NR] (imputed)	N
751	chr9	21787520	21787521	rs10429489	31326317	Dai J	2019-07-17	Lancet Respir Med	Identification of risk loci and a polygenic risk score for lung cancer: a large-scale prospective cohort study in Chinese populations.	Non-small cell lung cancer	13,327 Chinese ancestry cases, 13,793 European ancestry cases, 13,328 Chinese ancestry controls, 14,027 European ancestry controls	NA	9p21.3	NR	rs10429489-A	0.25	8E-6	(East Asian)	1.11	[1.06-1.16]	Illumina [~ 11000000] (imputed)	N
751	chr9	21787520	21787521	rs10429489	31326317	Dai J	2019-07-17	Lancet Respir Med	Identification of risk loci and a polygenic risk score for lung cancer: a large-scale prospective cohort study in Chinese populations.	Non-small cell lung cancer	13,327 Chinese ancestry cases, 13,793 European ancestry cases, 13,328 Chinese ancestry controls, 14,027 European ancestry controls	NA	9p21.3	CDKN2A	rs10429489-A	0.195	7E-10		1.11	[1.08-1.15]	Illumina [~ 11000000] (imputed)	N
751	chr9	21787520	21787521	rs10429489	31326317	Dai J	2019-07-17	Lancet Respir Med	Identification of risk loci and a polygenic risk score for lung cancer: a large-scale prospective cohort study in Chinese populations.	Lung adenocarcinoma	8,762 Chinese ancestry cases, 6,819 European ancestry cases, 13,328 Chinese ancestry controls, 14,027 European ancestry controls	NA	9p21.3	NR	rs10429489-A	0.25	5E-7	(East Asian)	1.13	[1.08-1.19]	Illumina [~ 11000000] (imputed)	N
751	chr9	21801529	21801530	rs4364717	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Diastolic blood pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	9p21.3	MTAP	rs4364717-A	0.55	1E-10		0.175	[0.12-0.23] unit decrease	Affymetrix [~ 9800000] (imputed)	N
751	chr9	21803879	21803880	rs871024	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Melanoma	6,777 European ancestry cases, 410,350 European ancestry controls	NA	9p21.3		rs871024-C	NR	6E-29		1.2163	NR	Affymetrix [7846216] (imputed)	N
751	chr9	21803879	21803880	rs871024	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous malignant melanoma	36,760 European ancestry cases, 375,188 European ancestry controls	NA	9p21.3	MTAP	rs871024-C	0.477	3E-65		1.1782	NR	Affymetrix, Illumina [NR] (imputed)	N
751	chr9	21804616	21804617	rs869330	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Nevus count or cutaneous melanoma	36,760 European ancestry cutaneous melanoma cases, 375,188 European ancestry controls, 12,930 European ancestry individuals, 52,847 individuals	NA	9p21.3	MTAP	rs869330-A	0.47684	6E-113				Affymetrix, Illumina [NR] (imputed)	N
751	chr9	21804692	21804693	rs869329	34724200	Marley AR	2021-11-01	Int J Cancer	Citrus-Gene interaction and melanoma risk in the UK Biobank.	Melanoma x citrus consumption interaction (2df)	1,563 European ancestry cases, 193,296 European ancestry controls	NA	9p21.3		rs869329-A	0.48	2E-10				Affymetrix [9981017] (imputed)	N
751	chr9	21804692	21804693	rs869329	30429480	Duffy DL	2018-11-14	Nat Commun	Novel pleiotropic risk loci for melanoma and nevus density implicate multiple biological pathways.	Nevus count or cutaneous melanoma	52,506 European ancestry individuals, 12,874 European ancestry cases, 23,203 European ancestry controls	NA	9p21.3	MTAP	rs869329-?	NR	7E-67				Affymetrix, Illumina [7850345] (imputed)	N
751	chr9	21804692	21804693	rs869329	30429480	Duffy DL	2018-11-14	Nat Commun	Novel pleiotropic risk loci for melanoma and nevus density implicate multiple biological pathways.	Nevus count	52,506 European ancestry individuals	NA	9p21.3	MTAP	rs869329-?	NR	2E-37	(Han & Eskin random effects)			Affymetrix, Illumina [up to 31337615] (imputed)	N
751	chr9	21805206	21805206	rs201131773	28212542	Ransohoff KJ	2017-02-09	Oncotarget	Two-stage genome-wide association study identifies a novel susceptibility locus associated with melanoma.	Melanoma	4,842 European ancestry cases, 286,565 European ancestry controls	1,804 European ancestry cases, 1,026 European ancestry controls	9p21.3	MTAP	rs201131773-?	0.48	3E-17		1.19	[1.15-1.24]	Illumina [at least 560000] (imputed)	N
751	chr9	21816527	21816528	rs7023329	28212542	Ransohoff KJ	2017-02-09	Oncotarget	Two-stage genome-wide association study identifies a novel susceptibility locus associated with melanoma.	Melanoma	4,842 European ancestry cases, 286,565 European ancestry controls	1,804 European ancestry cases, 1,026 European ancestry controls	9p21.3	MTAP, CDKN2A	rs7023329-?	0.5	7E-9		1.1627907	[NR]	Illumina [at least 560000] (imputed)	N
751	chr9	21816527	21816528	rs7023329	21983787	Barrett JH	2011-10-09	Nat Genet	Genome-wide association study identifies three new melanoma susceptibility loci.	Melanoma	2,804 European ancestry cases, 7,618 European ancestry controls	5,551 European ancestry cases, 7,449 European ancestry controls	9p21.3	MTAP, CDKN2A	rs7023329-?	0.51	7E-9		1.2	[1.14-1.28]	Illumina [594997]	N
751	chr9	21816527	21816528	rs7023329	19578364	Bishop DT	2009-07-05	Nat Genet	Genome-wide association study identifies three loci associated with melanoma risk.	Melanoma	1,539 European ancestry cases, 3,917 European ancestry controls	2,312 European ancestry cases, 1,867 European ancestry controls	9p21.3	CDKN2A	rs7023329-A	0.50	4E-7		1.18	[1.10-1.25]	Illumina [~ 317000]	N
751	chr9	21830156	21830157	rs885518	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung adenocarcinoma	11,273 European ancestry cases,  55,483 European ancestry controls	NA	9p21.3	MTAP	rs885518-G	0.101094603	1E-9		1.1671287	[1.110679289-1.226447176]	Illumina [10439017] (imputed)	N
751	chr9	21844771	21844772	rs11532907	30429480	Duffy DL	2018-11-14	Nat Commun	Novel pleiotropic risk loci for melanoma and nevus density implicate multiple biological pathways.	Nevus count or cutaneous melanoma	52,506 European ancestry individuals, 12,874 European ancestry cases, 23,203 European ancestry controls	NA	9p21.3	MTAP	rs11532907-?	NR	2E-34				Affymetrix, Illumina [7850345] (imputed)	N
751	chr9	21845307	21845308	rs67134687	32438682	Mateos MK	2020-05-19	Cancers (Basel)	Genome-Wide Association Meta-Analysis of Single-Nucleotide Polymorphisms and Symptomatic Venous Thromboembolism during Therapy for Acute Lymphoblastic Leukemia and Lymphoma in Caucasian Children.	Childhood ALL/LBL (acute lymphoblastic leukemia/lymphoblastic lymphoma) treatment-related venous thromboembolism	92 European ancestry cases, 1,481 European ancestry controls	NA	9p21.3	MTAP	rs67134687-?		4E-6		7.142857	[3.12-16.67]	Illumina [NR] (imputed)	N
751	chr9	21845307	21845308	rs67134687	30420678	Tasa T	2018-11-12	Eur J Hum Genet	Genetic variation in the Estonian population: pharmacogenomics study of adverse drug effects using electronic health records.	Adverse response to drug	16,226 European ancestry individuals	NA	9p21.3	MTAP	rs67134687-G	0.052	7E-7	(Dihydropyridine derivatives [C08CA])	2.45		Illumina [16500000] (imputed)	N
751	chr9	21852180	21852181	rs7026112	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	9p21.3	MTAP	rs7026112-T	0.134180854	9E-6		1.077864	[1.042856995-1.114046322]	Illumina [10439017] (imputed)	N
751	chr9	21860062	21860063	rs185224597	26423011	Wain LV	2015-09-27	Lancet Respir Med	Novel insights into the genetics of smoking behaviour, lung function, and chronic obstructive pulmonary disease (UK BiLEVE): a genetic association study in UK Biobank.	Lung function in heavy smokers (low FEV1 vs high FEV1)	9,748 European ancestry individuals with low FEV1 measurements, 4,906 European ancestry individuals with high FEV1 measurements	NA	9p21.3	MTAP	rs185224597-C	0.9960	2E-7		3.6630034	[2.24-5.99]	Affymetrix [28509962] (imputed)	N
751	chr9	21874966	21874967	rs182788815	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	9p21.3	RP11-145E5.5, MTAP	rs182788815-T	0.00453899999999996	5E-12		0.12790714	[0.092-0.164] unit increase	Affymetrix [93095623] (imputed)	N
752	chr9	21910697	21910698	rs10811635	30718454	Arnau-Soler A	2019-02-04	Transl Psychiatry	Genome-wide by environment interaction studies of depressive symptoms and psychosocial stress in UK Biobank and Generation Scotland.	Depressive symptoms x dependent stressful life events interaction (2df test)	4,919 European ancestry individuals	NA	9p21.3	NR	rs10811635-G	0.1907	9E-6		0.07892428	NR unit increase	Illumina [560351]	N
752	chr9	21948942	21948943	rs142754775	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	9p21.3	MTAP	rs142754775-?	NR	4E-6		0.235	[0.13-0.34] unit decrease	Illumina [at least 13000000] (imputed)	N
752	chr9	21950431	21950432	rs2427852	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	9p21.3	RP11-145E5.5	rs2427852-A	0.9004077	8E-10		0.023642246	[0.016-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
752	chr9	21950431	21950432	rs2427852	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	9p21.3	RP11-145E5.5	rs2427852-A	0.9004255	4E-11		0.025241239	[0.018-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
752	chr9	21950431	21950432	rs2427852	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	9p21.3	RP11-145E5.5	rs2427852-A	0.9004217	3E-11		0.025380975	[0.018-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
752	chr9	21950878	21950879	rs4503179	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	9p21.3		rs4503179-A	NR	8E-9		0.0135	[0.009-0.018] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
752	chr9	21951901	21951902	rs12349081	27197191	Fehringer G	2016-04-20	Cancer Res	Cross-Cancer Genome-Wide Analysis of Lung, Ovary, Breast, Prostate, and Colorectal Cancer Reveals Novel Pleiotropic Associations.	Cancer	5,020 European ancestry lung cancer cases, 3,718 European ancestry lung adenocarcinoma cases, 3,422 European ancestry lung squamous cell carcinoma cases, 15,414 European ancestry colorectal cancer cases, 10,809 European ancestry breast cancer cases, 4,939 European ancestry estrogen receptor negative breast cancer cases, 1,098 European ancestry ovarian cancer cases, 2,556 European ancestry serous ovarian cancer cases, 715 European ancestry ovarian endometrioid carcinoma cases, 9,710 European ancestry prostate cancer cases, 4,450 European ancestry aggressive prostate cancer cases,  61,820 European ancestry controls	NA	9p21.3	Intergenic	rs12349081-A	NR	6E-6		1.1	[NR]	Affymetrix, Illumina [9916564] (imputed)	N
752	chr9	21952925	21952926	rs2518722	33649051	Duchen D	2021-03-01	Infect Immun	Host genome wide association study of infant susceptibility to <i>Shigella</i>-associated diarrhea.	Shigella-associated diarrhea	143 Bangladeshi cases, 446 Bangladeshi controls	NA	9p21.3	RP11-145E5.5	rs2518722-?	NR	3E-6				Illumina [5729117] (imputed)	N
752	chr9	21953098	21953099	rs145542470	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	9p21.3	intergenic	rs145542470-A	0.018	6E-10		0.158	[0.11-0.21] unit increase	Affymetrix [7947838] (imputed)	N
752	chr9	21956229	21956230	rs9657608	27432226	Kar SP	2016-07-17	Cancer Discov	Genome-Wide Meta-Analyses of Breast, Ovarian, and Prostate Cancer Association Studies Identify Multiple New Susceptibility Loci Shared by at Least Two Cancer Types.	Breast cancer, ovarian cancer or prostate cancer (pleiotropy)	62,533 European ancestry breast cancer female cases, 60,976 European ancestry controls, 15,437 European ancestry invasive epithelial ovarian cancer female cases, 30,845 European ancestry controls, 34,379 European ancestry prostate cancer male cases, 33,164 European ancestry controls	NA	9p21.3	CDKN2A/CDKN2B	rs9657608-T	0.0923	1E-10		0.0685	[0.048-0.089] unit increase	Illumina [NR]	N
752	chr9	21956491	21956492	rs2027939	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous malignant melanoma	36,760 European ancestry cases, 375,188 European ancestry controls	NA	9p21.3	C9orf53	rs2027939-G	0.8764	3E-9		1.09	NR	Affymetrix, Illumina [NR] (imputed)	N
752	chr9	21961865	21961866	rs7041637	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	9p21.3		rs7041637-C	NR	2E-7		1.061	[1.037-1.085]	Affymetrix [7846216] (imputed)	N
752	chr9	21964902	21964906	rs3057314	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	9p21.3	NR	rs3057314-C	0.3185	7E-25	(EA)	0.0695	[0.056-0.083] unit increase	Illumina [~ 11800000] (imputed)	N
752	chr9	21966220	21966221	rs3731257	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Breast cancer	17,881 European ancestry cases, 410,350 European ancestry controls	NA	9p21.3		rs3731257-G	NR	5E-8		1.0733	NR	Affymetrix [7846216] (imputed)	N
752	chr9	21966220	21966221	rs3731257	27569725	Yang SK	2016-08-25	Gastroenterology	Identification of Loci at 1q21 and 16q23 That Affect Susceptibility to Inflammatory Bowel Disease in Koreans.	Inflammatory bowel disease	1,505 Korean ancestry cases, 4,041 Korean ancestry controls	1,989 Korean ancestry cases, 3,491 Korean ancestry controls	9p21.3	CDKN2A-AS1, CDKN2A, CDKN2B-AS1, CDKN2B	rs3731257-G	0.46	5E-8		1.17	[NR]	Illumina [522285]	N
752	chr9	21968198	21968199	rs11515	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	9p21.3	CDKN2A	rs11515-G	0.860705	1E-9		0.019823192	[0.013-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
752	chr9	21970915	21970916	rs3731249	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	9p21.3	NR	rs3731249-T	NR	2E-11		0.0511	[0.036-0.066] unit decrease	Affymetrix [9000000] (imputed)	N
752	chr9	21970915	21970916	rs3731249	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	9p21.3	NR	rs3731249-C	NR	6E-6	(GEE model)	1.2609	[0.71-1.81] unit decrease	NR [NR] (imputed)	N
752	chr9	21970915	21970916	rs3731249	29632299	Vijayakrishnan J	2018-04-09	Nat Commun	Genome-wide association study identifies susceptibility loci for B-cell childhood acute lymphoblastic leukemia.	Acute lymphoblastic leukemia in childhood (B cell precursor)	2,442 European ancestry cases, 14,609 European ancestry controls	NA	9p21.3	CDKN2A	rs3731249-?	NR	1E-27		2.65	[2.22-3.17]	Illumina [6755715] (imputed)	N
752	chr9	21971988	21971989	rs3731246	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	9p21.3	RP11-145E5.5, CDKN2A	rs3731246-G	NR	4E-8		0.0255736	[0.016-0.035] unit increase	Affymetrix [319769] (imputed)	N
752	chr9	21971988	21971989	rs3731246	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	9p21.3	RP11-145E5.5, CDKN2A	rs3731246-G	NR	3E-8		0.0257948	[0.017-0.035] unit increase	Affymetrix [319769] (imputed)	N
752	chr9	21973421	21973422	rs2811708	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	9p21.3	RP11-145E5.5, CDKN2A	rs2811708-T	0.264761	2E-13		0.0195557	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
752	chr9	21973421	21973422	rs2811708	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	9p21.3	RP11-145E5.5, CDKN2A	rs2811708-T	0.26481	1E-12		0.017936284	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
752	chr9	21973421	21973422	rs2811708	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9p21.3	NR	rs2811708-T	0.263292	1E-13				Affymetrix, Illumina [21126107] (imputed)	N
752	chr9	21973421	21973422	rs2811708	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	9p21.3	NR	rs2811708-T	0.265497	4E-15		0.017915	[0.013-0.022] SD unit increase	Affymetrix, Illumina [50282193] (imputed)	N
752	chr9	21974217	21974218	rs3731239	26545403	Bei JX	2016-01-01	Cancer Epidemiol Biomarkers Prev	A GWAS Meta-analysis and Replication Study Identifies a Novel Locus within CLPTM1L/TERT Associated with Nasopharyngeal Carcinoma in Individuals of Chinese Ancestry.	Nasopharyngeal carcinoma	2,152 Chinese ancestry cases, 3,740 Chinese ancestry controls	4,716 Chinese ancestry cases, 5,379 Chinese ancestry controls	9p21.3	C9orf53, CDKN2A	rs3731239-?	NR	1E-6		1.1904762		Illumina [Sequenom custom array used in replication] (imputed)	N
752	chr9	21976401	21976402	rs113650570	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	9p21.3	NR	rs113650570-A	NR	9E-10		0.0475	[0.032-0.063] unit decrease	Affymetrix [9000000] (imputed)	N
752	chr9	21976401	21976402	rs113650570	31767839	Vijayakrishnan J	2019-11-25	Nat Commun	Identification of four novel associations for B-cell acute lymphoblastic leukaemia risk.	B-cell acute lymphoblastic leukaemia	5,321 European ancestry cases, 16,666 European ancestry controls	2,237 cases, 3,461 controls	9p21.3	CDKN2A	rs113650570-A	0.02	8E-35		2.32	[2.03-2.65]	Affymetrix, Illumina [~ 6118121] (imputed)	N
752	chr9	21980943	21980944	rs7874405	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	9p21.3	RP11-145E5.5, CDKN2A	rs7874405-T	0.712013	7E-10		0.015165638	[0.01-0.02] unit increase	Affymetrix [93095623] (imputed)	N
752	chr9	21980943	21980944	rs7874405	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9p21.3	NR	rs7874405-T	0.722887	3E-13				Affymetrix, Illumina [19872809] (imputed)	N
752	chr9	21980943	21980944	rs7874405	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	9p21.3	NR	rs7874405-T	0.71211	9E-16		0.018146	[0.014-0.023] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
752	chr9	21981630	21981630	rs5896958	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	9p21.3	RP11-145E5.5, CDKN2A	rs5896958-CT	0.716549	8E-14		0.01882127	[0.014-0.024] unit increase	Affymetrix [93095623] (imputed)	N
752	chr9	21981644	21981644	rs397893689	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	9p21.3		rs397893689-CT	NR	2E-8		0.0114	[0.0075-0.0153] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
752	chr9	21984660	21984661	rs3731217	29632299	Vijayakrishnan J	2018-04-09	Nat Commun	Genome-wide association study identifies susceptibility loci for B-cell childhood acute lymphoblastic leukemia.	Acute lymphoblastic leukemia in childhood (B cell precursor)	2,442 European ancestry cases, 14,609 European ancestry controls	NA	9p21.3	CDKN2A	rs3731217-?	NR	7E-14		1.4285715	[0.64-0.77]	Illumina [6755715] (imputed)	N
752	chr9	21984660	21984661	rs3731217	23996088	Migliorini G	2013-08-30	Blood	Variation at 10p12.2 and 10p14 influences risk of childhood B-cell acute lymphoblastic leukemia and phenotype.	Acute lymphoblastic leukemia (B-cell precursor)	1,658 European ancestry child cases, 4,723 European ancestry controls	1,449 European ancestry child cases, 1,488 European ancestry controls	9p21.3	CDKN2A/B	rs3731217-?	NR	2E-8				Illumina [382776] (imputed)	N
752	chr9	21986846	21986847	rs3731211	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Spleen volume	32,860 European ancestry individuals	NA	9p21.3	CDKN2A	rs3731211-?	NR	2E-15	(conditional)	0.0616	NR L decrease	Affymetrix [9390170] (imputed)	N
752	chr9	21986846	21986847	rs3731211	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	9p21.3	NR	rs3731211-A	NR	6E-16		0.022	[0.017-0.027] unit increase	Affymetrix [9000000] (imputed)	N
752	chr9	21986846	21986847	rs3731211	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	9p21.3	RP11-145E5.5, CDKN2A	rs3731211-A	0.721875	4E-89		0.04994112	[0.045-0.055] unit increase	Affymetrix [93095623] (imputed)	N
752	chr9	21986846	21986847	rs3731211	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	9p21.3	RP11-145E5.5, CDKN2A	rs3731211-A	0.721879	9E-65		0.042384733	[0.037-0.047] unit increase	Affymetrix [93095623] (imputed)	N
752	chr9	21986846	21986847	rs3731211	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	9p21.3	RP11-145E5.5, CDKN2A	rs3731211-A	0.72177	2E-23		0.024686707	[0.02-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
752	chr9	21986846	21986847	rs3731211	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	9p21.3	RP11-145E5.5, CDKN2A	rs3731211-A	0.721759	4E-24		0.025213962	[0.02-0.03] unit increase	Affymetrix [93095623] (imputed)	N
752	chr9	21986846	21986847	rs3731211	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	9p21.3	RP11-145E5.5, CDKN2A	rs3731211-A	0.721776	2E-21		0.023587987	[0.019-0.028] unit increase	Affymetrix [93095623] (imputed)	N
752	chr9	21986846	21986847	rs3731211	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	9p21.3	RP11-145E5.5, CDKN2A	rs3731211-A	0.721793	1E-71		0.0442383	[0.039-0.049] unit increase	Affymetrix [93095623] (imputed)	N
752	chr9	21986846	21986847	rs3731211	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	9p21.3	NR	rs3731211-A	0.719885	2E-11		0.013534	[0.0096-0.0175] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
752	chr9	21986846	21986847	rs3731211	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9p21.3	NR	rs3731211-A	0.73246	2E-94				Affymetrix, Illumina [23472807] (imputed)	N
752	chr9	21986846	21986847	rs3731211	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	9p21.3	NR	rs3731211-A	0.719794	5E-95		0.043598	[0.039-0.048] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
752	chr9	21986846	21986847	rs3731211	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	9p21.3		rs3731211-?	NR	3E-13				NR [~ 8900000] (imputed)	N
752	chr9	21986846	21986847	rs3731211	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	9p21.3		rs3731211-?	NR	3E-15				NR [~ 8900000] (imputed)	N
752	chr9	21986846	21986847	rs3731211	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	9p21.3	CDKN2A, RP11-145E5.5	rs3731211-A	0.7212	6E-29		0.04550482	[0.038-0.053] unit increase	Affymetrix [~ 2500000] (imputed)	N
752	chr9	21986846	21986847	rs3731211	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	9p21.3	CDKN2A, RP11-145E5.5	rs3731211-A	0.7211	5E-24		0.04106969	[0.033-0.049] unit increase	Affymetrix [~ 2500000] (imputed)	N
752	chr9	21986846	21986847	rs3731211	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	9p21.3	CDKN2A, RP11-145E5.5	rs3731211-A	0.7211	6E-13		0.0286498	[0.021-0.036] unit increase	Affymetrix [~ 2500000] (imputed)	N
752	chr9	21986846	21986847	rs3731211	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	9p21.3	CDKN2A, RP11-145E5.5	rs3731211-A	0.7211	4E-23		0.03979028	[0.032-0.048] unit increase	Affymetrix [~ 2500000] (imputed)	N
752	chr9	21986846	21986847	rs3731211	22139419	Gieger C	2011-11-30	Nature	New gene functions in megakaryopoiesis and platelet formation.	Platelet count	38,891 European ancestry individuals, 1,661 Val Borbera (founder/genetic isolate) individuals, 521 Carlantino (founder/genetic isolate) individuals, 1,198 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,213 South Tyrolean (founder/genetic isolate) individuals, 890 Sorbian (founder/genetic isolate) individuals, 4,292 Sardinian (founder/genetic isolate) individuals	Up to 16,949 European ancestry individuals, 854 Cliento (founder/genetic isolate) individuals, 1,035 Talana (founder/genetic isolate) individuals	9p21.3	CDKN2A	rs3731211-A	NR	6E-14		3.281	[2.42-4.14] 10^9/l increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
752	chr9	21990456	21990457	rs7036656	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	9p21.3		rs7036656-C	0.278	3E-31				Affymetrix [10369434] (imputed)	N
752	chr9	21990456	21990457	rs7036656	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	9p21.3		rs7036656-C	0.278	1E-17				Affymetrix [10369434] (imputed)	N
752	chr9	21990456	21990457	rs7036656	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	9p21.3		rs7036656-C	0.278	3E-8				Affymetrix [10369434] (imputed)	N
752	chr9	21990456	21990457	rs7036656	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	9p21.3		rs7036656-C	0.278	7E-18				Affymetrix [10369434] (imputed)	N
752	chr9	21990456	21990457	rs7036656	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	9p21.3		rs7036656-C	0.278	1E-36				Affymetrix [10369434] (imputed)	N
752	chr9	21990456	21990457	rs7036656	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	9p21.3		rs7036656-C	0.278	1E-11				Affymetrix [10369434] (imputed)	N
752	chr9	21990456	21990457	rs7036656	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	9p21.3		rs7036656-C	0.278	6E-13				Affymetrix [10369434] (imputed)	N
752	chr9	21990456	21990457	rs7036656	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	9p21.3	RP11-145E5.5, CDKN2A	rs7036656-T	0.722236	2E-32		0.02928234	[0.024-0.034] unit increase	Affymetrix [93095623] (imputed)	N
752	chr9	21990456	21990457	rs7036656	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	9p21.3	RP11-145E5.5, CDKN2A	rs7036656-C	0.277826	2E-29		0.027818544	[0.023-0.033] unit increase	Affymetrix [93095623] (imputed)	N
752	chr9	21990456	21990457	rs7036656	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9p21.3	NR	rs7036656-T	0.739526	3E-105				Affymetrix, Illumina [24588908] (imputed)	N
752	chr9	21990456	21990457	rs7036656	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	9p21.3	NR	rs7036656-T	0.721521	2E-97		0.042712	[0.039-0.047] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
752	chr9	21990456	21990457	rs7036656	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	9p21.3		rs7036656-?	NR	8E-37				NR [~ 8900000] (imputed)	N
752	chr9	21990456	21990457	rs7036656	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	9p21.3	CDKN2A, RP11-145E5.5	rs7036656-T	0.7213	3E-12		0.02800243	[0.02-0.036] unit increase	Affymetrix [~ 2500000] (imputed)	N
752	chr9	21991922	21991923	rs2811710	27363682	Mitchell JS	2016-07-01	Nat Commun	Genome-wide association study identifies multiple susceptibility loci for multiple myeloma.	Multiple myeloma	7,319 European ancestry cases, 234,385 European ancestry controls	2,547 European ancestry cases, 4,803 European ancestry controls	9p21.3	CDKN2A, p16INK4A	rs2811710-G	0.657	2E-13		1.15	[NR]	Illumina [at least 7182761] (imputed)	N
752	chr9	21993963	21993964	rs2811711	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	9p21.3		rs2811711-T	NR	7E-8		1.157	[1.097-1.22]	Affymetrix [7846216] (imputed)	N
752	chr9	21995043	21995044	rs55797833	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Melanoma	6,777 European ancestry cases, 410,350 European ancestry controls	NA	9p21.3		rs55797833-T	0.977377	7E-12		1.7143	NR	Affymetrix [7846216] (imputed)	N
752	chr9	21995043	21995044	rs55797833	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)(bidirectional)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	9p21.3		rs55797833-T	0.977377	1E-7				Affymetrix [7846216] (imputed)	N
752	chr9	21995043	21995044	rs55797833	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous malignant melanoma	36,760 European ancestry cases, 375,188 European ancestry controls	NA	9p21.3	CDKN2B-AS1	rs55797833-T	0.9811	3E-19		1.5024	NR	Affymetrix, Illumina [NR] (imputed)	N
752	chr9	21995940	21995941	rs78545330	30323354	Lee JY	2018-10-15	Sci Rep	BRCA1/2-negative, high-risk breast cancers (BRCAX) for Asian women: genetic susceptibility loci and their potential impacts.	BRCA1/2-negative high-risk breast cancer	1,469 Korean ancestry cases, 5,979 Korean ancestry controls	NA	9p21.3	CDKN2B-AS1	rs78545330-A	0.26	3E-6		1.26	[1.14-1.39]	Affymetrix, Illumina [3378933] (imputed)	N
752	chr9	21997014	21997015	rs61271866	25129146	Wu C	2014-08-17	Nat Genet	Joint analysis of three genome-wide association studies of esophageal squamous cell carcinoma in Chinese populations.	Esophageal squamous cell carcinoma	5,337 Han Chinese ancestry cases, 5,787 Han Chinese ancestry controls	9,654 Han Chinese ancestry cases, 10,058 Han Chinese ancestry  controls	9p21.3	CDKN2B, CDKN2A	rs61271866-A	0.190	7E-7		1.11	[1.07-1.16]	Affymetrix, Illumina [7556215] (imputed)	N
752	chr9	22002477	22002477	rs35720900	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	9p21.3	NR	rs35720900-?		4E-9	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
752	chr9	22003222	22003223	rs3217992	33290408	Ray D	2020-12-08	PLoS Genet	A powerful method for pleiotropic analysis under composite null hypothesis identifies novel shared loci between Type 2 Diabetes and Prostate Cancer.	Type 2 diabetes or prostate cancer (pleiotropy)	62,892 European ancestry T2D cases, 79,194 European ancestry PrCa cases, 659,536 European ancestry controls	NA	9p21.3	CDKN2A/B	rs3217992-?		8E-9				Illumina [5041948] (imputed)	N
752	chr9	22003222	22003223	rs3217992	28525603	Ortega-Alonso A	2017-05-19	Schizophr Bull	Genome-Wide Association Study of Psychosis Proneness in the Finnish Population.	Psychosis proneness (hypomanic personality scale)	3,967 Finnish ancestry individuals	NA	9p21.3	CDKN2B	rs3217992-?		7E-7				Illumina [~ 9600000] (imputed)	N
752	chr9	22003222	22003223	rs3217992	28525603	Ortega-Alonso A	2017-05-19	Schizophr Bull	Genome-Wide Association Study of Psychosis Proneness in the Finnish Population.	Psychosis proneness (hypomanic personality scale and revised social anhedonia scale)	3,837 Finnish ancestry individuals	NA	9p21.3	CDKN2B	rs3217992-?		4E-6				Illumina [~ 9600000] (imputed)	N
752	chr9	22003222	22003223	rs3217992	28525603	Ortega-Alonso A	2017-05-19	Schizophr Bull	Genome-Wide Association Study of Psychosis Proneness in the Finnish Population.	Psychosis proneness (hypomanic personality scale and revised physical anhedonia scale)	3,787 Finnish ancestry individuals	NA	9p21.3	CDKN2B	rs3217992-?		4E-6				Illumina [~ 9600000] (imputed)	N
752	chr9	22003222	22003223	rs3217992	28525603	Ortega-Alonso A	2017-05-19	Schizophr Bull	Genome-Wide Association Study of Psychosis Proneness in the Finnish Population.	Psychosis proneness (hypomanic personality scale and perceptual aberration scale)	3,824 Finnish ancestry individuals	NA	9p21.3	CDKN2B	rs3217992-?		4E-6				Illumina [~ 9600000] (imputed)	N
752	chr9	22003366	22003367	rs1063192	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	9p21.3	CDKN2B-AS1/CDKN2B	rs1063192-G	0.440315561394922	3E-18		0.0634	[0.049-0.078] unit decrease	NR [5035015] (imputed)	N
752	chr9	22003366	22003367	rs1063192	26545403	Bei JX	2016-01-01	Cancer Epidemiol Biomarkers Prev	A GWAS Meta-analysis and Replication Study Identifies a Novel Locus within CLPTM1L/TERT Associated with Nasopharyngeal Carcinoma in Individuals of Chinese Ancestry.	Nasopharyngeal carcinoma	2,152 Chinese ancestry cases, 3,740 Chinese ancestry controls	4,716 Chinese ancestry cases, 5,379 Chinese ancestry controls	9p21.3	CDKN2A, CDKN2B	rs1063192-?	NR	8E-7		1.1627907		Illumina [Sequenom custom array used in replication] (imputed)	N
752	chr9	22003366	22003367	rs1063192	22419738	Osman W	2012-03-22	Hum Mol Genet	A genome-wide association study in the Japanese population confirms 9p21 and 14q23 as susceptibility loci for primary open angle glaucoma.	Glaucoma (primary open-angle)	1,394 Japanese ancestry cases, 6,599 Japanese ancestry controls	1,802 Japanese ancestry cases, 7,212 Japanese ancestry controls	9p21.3	CDKN2B	rs1063192-T	0.79	5E-11		1.33	[1.22-1.43]	Illumina [602216]	N
752	chr9	22003366	22003367	rs1063192	20548946	Ramdas WD	2010-06-10	PLoS Genet	A genome-wide association study of optic disc parameters.	Vertical cup-disc ratio	7,360 European ancestry individuals	4,455 European ancestry individuals	9p21.3	CDKN2B	rs1063192-G	0.46	4E-15		0.01	[0.010-0.018] mm2 decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
752	chr9	22005329	22005330	rs3217986	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous malignant melanoma	36,760 European ancestry cases, 375,188 European ancestry controls	NA	9p21.3	CDKN2B	rs3217986-G	0.0869	4E-22		1.1720581	NR	Affymetrix, Illumina [NR] (imputed)	N
752	chr9	22006272	22006273	rs2069426	29348612	Wiemels JL	2018-01-18	Nat Commun	GWAS in childhood acute lymphoblastic leukemia reveals novel genetic associations at chromosomes 17q12 and 8q24.21.	Acute lymphoblastic leukemia (childhood)	1,949 Latino cases, 8,584 Latino controls, 1,184 European ancestry cases, 3551 European ancestry controls, 130 African American cases, 3,842 African American controls	959 European ancestry cases,  2,624 European ancestry controls, 530 Latino cases, 511 Latino controls	9p21.3	CDKN2A	rs2069426-A	NR	4E-9		1.35	[NR]	Affymetrix [757935]	N
752	chr9	22006347	22006348	rs974336	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	35,035 East Asian ancestry cases, 35,771 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	NA	9p21.3		rs974336-T	0.22	6E-9	(conditional)	1.1	[1.06-1.13]	Affymetrix, Illumina [NR] (imputed)	N
752	chr9	22007329	22007330	rs3217978	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	9p21.3	CDKN2B, CDKN2B-AS1	rs3217978-A	0.0236	2E-10		0.1546	[0.11-0.2] unit decrease	NR [8041861] (imputed)	N
752	chr9	22009697	22009698	rs2069418	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	9p21.3	NR	rs2069418-?		5E-10	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
752	chr9	22010003	22010004	rs2069416	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	9p21.3	NR	rs2069416-?		3E-8	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
752	chr9	22011082	22011083	rs76959412	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	9p21.3		rs76959412-C	NR	7E-7		1.2391574	[1.14-1.35]	Affymetrix [7846216] (imputed)	N
752	chr9	22011359	22011360	rs79356439	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous malignant melanoma	36,760 European ancestry cases, 375,188 European ancestry controls	NA	9p21.3	UBA52P6	rs79356439-A	0.9919	9E-13		1.8504	NR	Affymetrix, Illumina [NR] (imputed)	N
752	chr9	22015464	22015465	rs1101330	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	9p21.3	NR	rs1101330-?		9E-9	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
752	chr9	22017835	22017836	rs643319	32835660	Shin JG	2020-08-21	J Invest Dermatol	Genome-wide association analysis of 17,019 Korean women identifies variants associated with facial pigmented spots.	Facial pigmentation measurement (polar light)	11,079 Korean women	5,940 Korean women	9p21.3	CDKN2B, AS1	rs643319-A	0.364	9E-11		0.57	unit decrease	Illumina [366864] (imputed)	N
752	chr9	22017835	22017836	rs643319	32835660	Shin JG	2020-08-21	J Invest Dermatol	Genome-wide association analysis of 17,019 Korean women identifies variants associated with facial pigmented spots.	Facial pigmentation measurement (UV light)	11,079 Korean women	5,940 Korean women	9p21.3	CDKN2B, AS1	rs643319-A	0.364	8E-9		0.67	unit decrease	Illumina [366864] (imputed)	N
752	chr9	22019128	22019129	rs523096	22792221	Takamoto M	2012-07-05	PLoS One	Common variants on chromosome 9p21 are associated with normal tension glaucoma.	Glaucoma	286 Japanese ancestry cases, 557 Japanese ancestry controls	334 Japanese ancestry cases, 701 Japanese ancestry controls	9p21.3	CDKN2BAS, CDK2NA, CDKN2B	rs523096-A	0.825	5E-11		2.13	[1.69-2.68]	Affymetrix [531009]	N
752	chr9	22019672	22019673	rs518394	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	9p21.3	NR	rs518394-?		2E-10	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
753	chr9	22026076	22026077	rs615552	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine without aura	7,107 European ancestry cases, 69,427 European ancestry controls	NA	9p21.3	intergenic	rs615552-C	0.43	4E-6		1.1	[1.06-1.14]	Affymetrix, Illumina [~ 2300000] (imputed)	N
753	chr9	22028405	22028406	rs62560774	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	9p21.3	NR	rs62560774-?		7E-9	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
753	chr9	22029546	22029547	rs564398	29615537	Kulminski AM	2018-03-01	Aging (Albany NY)	Strong impact of natural-selection-free heterogeneity in genetics of age-related phenotypes.	Coronary heart disease	6,403 European ancestry cases, up to 27,028 European ancestry controls	NA	9p21.3	CDKN2B	rs564398-G	0.399	2E-7		0.1026	unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
753	chr9	22029546	22029547	rs564398	17463249	Zeggini E	2007-04-26	Science	Replication of genome-wide association signals in UK samples reveals risk loci for type 2 diabetes.	Type 2 diabetes	1,924 European ancestry cases, 2,938 European ancestry controls	3,757 European ancestry cases, 5,346 European ancestry controls	9p21.3	CDKN2A, CDKN2B	rs564398-T	0.56	1E-6		1.13	[1.08-1.19]	Affymetrix [393453]	N
753	chr9	22031004	22031005	rs7865618	25631615	Springelkamp H	2015-01-28	Genet Epidemiol	Meta-analysis of Genome-Wide Association Studies Identifies Novel Loci Associated With Optic Disc Morphology.	Optic cup area	15,087 European ancestry individuals, 2,131 Erasmus Rucphen Family individuals	2,363 Chinese ancestry individuals, 2,225 Malay ancestry individuals, 2,025 Indian ancestry individuals	9p21.3	CDKN2B-AS1	rs7865618-G	0.44	9E-20	(EA)	0.024	[0.018-0.030] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
753	chr9	22031004	22031005	rs7865618	25631615	Springelkamp H	2015-01-28	Genet Epidemiol	Meta-analysis of Genome-Wide Association Studies Identifies Novel Loci Associated With Optic Disc Morphology.	Optic cup area	15,087 European ancestry individuals, 2,131 Erasmus Rucphen Family individuals	2,363 Chinese ancestry individuals, 2,225 Malay ancestry individuals, 2,025 Indian ancestry individuals	9p21.3	CDKN2B-AS1	rs7865618-G	0.44	1E-21		0.023	[0.019-0.027] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
753	chr9	22031004	22031005	rs7865618	25241763	Springelkamp H	2014-09-22	Nat Commun	Meta-analysis of genome-wide association studies identifies novel loci that influence cupping and the glaucomatous process.	Vertical cup-disc ratio	18,963 European ancestry individuals, 2,131 Erasmus Rucphen individuals	2,453 Chinese ancestry individuals, 2,026 Indian ancestry individuals, 2,305 Malay ancestry individuals	9p21.3	CDKN2BAS	rs7865618-G	NR	5E-24		0.013	[0.011-0.015] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
753	chr9	22031004	22031005	rs7865618	22428042	Nakano M	2012-03-12	PLoS One	Common variants in CDKN2B-AS1 associated with optic-nerve vulnerability of glaucoma identified by genome-wide association studies in Japanese.	Glaucoma (primary open-angle)	833 Japanese ancestry cases, 686 Japanese ancestry controls	411 Japanese ancestry cases, 289 Japanese ancestry controls	9p21.3	CDKN2B-AS1	rs7865618-A	0.82	9E-11		1.78	[1.50-2.12]	Affymetrix [653519]	N
753	chr9	22031004	22031005	rs7865618	21606135	Wild PS	2011-05-23	Circ Cardiovasc Genet	A genome-wide association study identifies LIPA as a susceptibility gene for coronary artery disease.	Coronary heart disease	2,078 European ancestry cases, 2,953 European ancestry controls	19,350 European ancestry cases, 35,408 European ancestry controls	9p21.3	MTAP	rs7865618-A	0.59	2E-27		1.18	[1.14-1.21]	Affymetrix [608247]	N
753	chr9	22032151	22032152	rs634537	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glaucoma	8,448 East Asian ancestry cases, 168,903 East Asian ancestry controls	NA	9p21.3		rs634537-G	0.150284402	8E-18		0.2009519	[0.16-0.25] unit decrease	Illumina [13429686] (imputed)	N
753	chr9	22032151	22032152	rs634537	30152087	Ostrom QT	2018-08-27	Int J Cancer	Age-specific genome-wide association study in glioblastoma identifies increased proportion of 'lower grade glioma'-like features associated with younger age.	Glioblastoma (age-stratified)	1,533 cases diagnosed below median age, 1,476 cases diagnosed at median age, 1,503 cases diagnosed above median age, 10,582 controls,	NA	9p21.3	CDKN2B	rs634537-G	NR	4E-19	(Median age-at-diagnosis)	1.44	[1.33-1.56]	NR [NR] (imputed)	N
753	chr9	22032151	22032152	rs634537	30152087	Ostrom QT	2018-08-27	Int J Cancer	Age-specific genome-wide association study in glioblastoma identifies increased proportion of 'lower grade glioma'-like features associated with younger age.	Glioblastoma (age-stratified)	1,533 cases diagnosed below median age, 1,476 cases diagnosed at median age, 1,503 cases diagnosed above median age, 10,582 controls,	NA	9p21.3	CDKN2B	rs634537-G	NR	3E-15	(Above median age-at-diagnosis)	1.38	[1.27-1.49]	NR [NR] (imputed)	N
753	chr9	22032151	22032152	rs634537	30152087	Ostrom QT	2018-08-27	Int J Cancer	Age-specific genome-wide association study in glioblastoma identifies increased proportion of 'lower grade glioma'-like features associated with younger age.	Glioblastoma (age-stratified)	1,533 cases diagnosed below median age, 1,476 cases diagnosed at median age, 1,503 cases diagnosed above median age, 10,582 controls,	NA	9p21.3	CDKN2B	rs634537-G	NR	1E-16	(Below median age-at-diagnosis)	1.4	[1.29-1.51]	NR [NR] (imputed)	N
753	chr9	22032151	22032152	rs634537	29743610	Ostrom QT	2018-05-09	Sci Rep	Sex-specific glioma genome-wide association study identifies new risk locus at 3p21.31 in females, and finds sex-differences in risk at 8q24.21.	Non-glioblastoma glioma	1,716 European ancestry male cases, 1,320 European ancestry female cases, 5,216 European ancestry male controls, 5,470 European ancestry female controls	NA	9p21.3	CDKN2B-AS1	rs634537-G	NR	3E-8	(males)	1.26	[1.16-1.37]	Affymetrix, Illumina [NR] (imputed)	N
753	chr9	22032151	22032152	rs634537	29743610	Ostrom QT	2018-05-09	Sci Rep	Sex-specific glioma genome-wide association study identifies new risk locus at 3p21.31 in females, and finds sex-differences in risk at 8q24.21.	Glioma	4,831 European ancestry male cases, 3,206 European ancestry female cases, 5,216 European ancestry male controls, 5,470 European ancestry female controls	NA	9p21.3	CDKN2B-AS1	rs634537-G	NR	7E-14	(females)	1.3	[1.21-1.39]	Affymetrix, Illumina [NR] (imputed)	N
753	chr9	22032151	22032152	rs634537	29743610	Ostrom QT	2018-05-09	Sci Rep	Sex-specific glioma genome-wide association study identifies new risk locus at 3p21.31 in females, and finds sex-differences in risk at 8q24.21.	Glioma	4,831 European ancestry male cases, 3,206 European ancestry female cases, 5,216 European ancestry male controls, 5,470 European ancestry female controls	NA	9p21.3	CDKN2B-AS1	rs634537-G	NR	2E-21	(males)	1.33	[1.25-1.41]	Affymetrix, Illumina [NR] (imputed)	N
753	chr9	22032151	22032152	rs634537	29743610	Ostrom QT	2018-05-09	Sci Rep	Sex-specific glioma genome-wide association study identifies new risk locus at 3p21.31 in females, and finds sex-differences in risk at 8q24.21.	Glioblastoma	2,835 European ancestry male cases, 1,682 European ancestry female cases, 5,216 European ancestry male controls, 5,470 European ancestry female controls	NA	9p21.3	CDKN2B-AS1	rs634537-G	NR	2E-16	(females)	1.41	[1.30-1.53]	Affymetrix, Illumina [NR] (imputed)	N
753	chr9	22032151	22032152	rs634537	29743610	Ostrom QT	2018-05-09	Sci Rep	Sex-specific glioma genome-wide association study identifies new risk locus at 3p21.31 in females, and finds sex-differences in risk at 8q24.21.	Glioblastoma	2,835 European ancestry male cases, 1,682 European ancestry female cases, 5,216 European ancestry male controls, 5,470 European ancestry female controls	NA	9p21.3	CDKN2B-AS1	rs634537-G	NR	1E-20	(males)	1.38	[1.29-1.48]	Affymetrix, Illumina [NR] (imputed)	N
753	chr9	22032151	22032152	rs634537	28346443	Melin BS	2017-03-27	Nat Genet	Genome-wide association study of glioma subtypes identifies specific differences in genetic susceptibility to glioblastoma and non-glioblastoma tumors.	Non-glioblastoma glioma	5,819 European ancestry cases, 18,190 European ancestry controls.	NA	9p21.3	CDKN2A, CDKN2B	rs634537-G	0.411	1E-15		1.21	1.16-1.27	Illumina [at least 6769856] (imputed)	N
753	chr9	22032151	22032152	rs634537	28346443	Melin BS	2017-03-27	Nat Genet	Genome-wide association study of glioma subtypes identifies specific differences in genetic susceptibility to glioblastoma and non-glioblastoma tumors.	Glioma	12,469 European ancestry cases, 18,190 European ancestry controls.	NA	9p21.3	CDKN2A, CDKN2B	rs634537-G	0.411	1E-45		1.3	1.25-1.34	Illumina [at least 6887412] (imputed)	N
753	chr9	22032151	22032152	rs634537	28346443	Melin BS	2017-03-27	Nat Genet	Genome-wide association study of glioma subtypes identifies specific differences in genetic susceptibility to glioblastoma and non-glioblastoma tumors.	Glioblastoma	6,191 European ancestry cases, 18,190 European ancestry controls.	NA	9p21.3	CDKN2A, CDKN2B	rs634537-G	0.411	7E-45		1.37	1.31-1.43	Illumina [at least 6790270] (imputed)	N
753	chr9	22033365	22033366	rs2157719	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Glaucoma	5,761 Japanese ancestry cases, 206,692 Japanese ancestry controls	NA	9p21.3		rs2157719-T	0.84910355	2E-14		1.228558	[1.165244857-1.295311024]	Illumina [8919992] (imputed)	N
753	chr9	22033365	22033366	rs2157719	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Vertical cup-disc ratio	21,768 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	8,168 Asian ancestry individuals	9p21.3	CDKN2B-AS1	rs2157719-C	NR	6E-33	(EA)	0.014	[0.012-0.016] unit decrease	Affymetrix, Illumina [~ 8000000] (imputed)	N
753	chr9	22033365	22033366	rs2157719	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Vertical cup-disc ratio	21,768 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	8,168 Asian ancestry individuals	9p21.3	CDKN2B-AS1	rs2157719-C	NR	4E-35		0.013	[0.011-0.015] unit decrease	Affymetrix, Illumina [~ 8000000] (imputed)	N
753	chr9	22033365	22033366	rs2157719	26424050	Kinnersley B	2015-10-01	Nat Commun	Genome-wide association study identifies multiple susceptibility loci for glioma.	Non-glioblastoma glioma	2,364 Northern European ancestry cases, 7,435 Northern European ancestry controls	up to 1,490 European ancestry cases, up to 1,723 European ancestry controls	9p21.3	NR	rs2157719-C	NR	2E-11		1.27	[1.19-1.36]	Illumina [at least 8427548] (imputed)	N
753	chr9	22033365	22033366	rs2157719	26424050	Kinnersley B	2015-10-01	Nat Commun	Genome-wide association study identifies multiple susceptibility loci for glioma.	Glioma	1,783 Northern European ancestry glioblastoma cases,  2,364 Northern European ancestry non-glioblastoma cases, 7,435 Northern European ancestry controls	1,490 European ancestry cases, 1,723 European ancestry control	9p21.3	NR	rs2157719-C	NR	3E-17		1.28	[1.21-1.35]	Illumina [at least 8427548] (imputed)	N
753	chr9	22033365	22033366	rs2157719	25861811	Li Z	2015-04-10	Hum Mol Genet	A common variant near TGFBR3 is associated with primary open angle glaucoma.	Glaucoma (primary open-angle)	2,735 East Asian ancestry cases, 590 African American cases, 121 South Asian ancestry cases, 58 South East Asian ancestry cases, 6,410 East Asian ancestry controls, 636 African American controls, 716 South Asian ancestry controls, 1,984 South East Asian ancestry controls	4,773 European ancestry cases, 3,006 East Asian ancestry cases, 497 African American cases, 453 South Asian ancestry cases, 208 South East Asian ancestry cases, 236 Middle East ancestry cases, 11,786 European ancestry controls, 8,754 East Asian ancestry controls, 304 African American controls, 2,496 South Asian ancestry controls, 2,785 South East Asian ancestry controls, 655 Middle East ancestry controls	9p21.3	CDKN2B-AS1	rs2157719-?		3E-33		1.4084507		Illumina [~ 272000]	N
753	chr9	22033365	22033366	rs2157719	22570617	Wiggs JL	2012-04-26	PLoS Genet	Common variants at 9p21 and 8q22 are associated with increased susceptibility to optic nerve degeneration in glaucoma.	Glaucoma (primary open-angle)	3,146 European ancestry cases, 3,487 European ancestry controls	NA	9p21.3	CDKN2BAS	rs2157719-?	NR	2E-18		1.45	[1.33-1.59]	Illumina [495132] (imputed)	N
753	chr9	22033365	22033366	rs2157719	22570617	Wiggs JL	2012-04-26	PLoS Genet	Common variants at 9p21 and 8q22 are associated with increased susceptibility to optic nerve degeneration in glaucoma.	Glaucoma (primary open-angle)	3,146 European ancestry cases, 3,487 European ancestry controls	NA	9p21.3	CDKN2BAS	rs2157719-?	NR	1E-12	(NPG)	1.72	[1.49-2.00]	Illumina [495132] (imputed)	N
753	chr9	22033365	22033366	rs2157719	21531791	Sanson M	2011-04-29	Hum Mol Genet	Chromosome 7p11.2 (EGFR) variation influences glioma risk.	Glioma	4,147 European ancestry cases, 7,435 European ancestry controls	NA	9p21.3	CDKN2A, CDKN2B	rs2157719-?	NR	5E-16		1.26	[NR]	Illumina [424460]	N
753	chr9	22034718	22034719	rs2151280	25855136	Stacey SN	2015-04-09	Nat Commun	New basal cell carcinoma susceptibility loci.	Basal cell carcinoma	4,572 European ancestry cases, 266,358 European ancestry controls	up to 956 European ancestry cases, up to 4,214 European ancestry controls, 526 cases, 528 controls	9p21.3	CDKN2A, CDKN2B	rs2151280-G	0.532	9E-11		1.19	[NR]	Illumina [24988228] (imputed)	N
753	chr9	22034718	22034719	rs2151280	24403052	Stacey SN	2014-01-08	Hum Mol Genet	Germline sequence variants in TGM3 and RGS22 confer risk of basal cell carcinoma.	Basal cell carcinoma	4,208 European ancestry cases, 109,408 European ancestry controls	up to 1,480 European ancestry cases, up to 4,610 European ancestry controls	9p21.3	CDKN2A, CDKN2B	rs2151280-G		3E-10		1.2	[1.14-1.27]	Illumina [38500000] (imputed)	N
753	chr9	22040764	22040765	rs1333037	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (low intraocular pressure)	1,886 European ancestry cases, 15,151 European ancestry controls, 1,315 East Asian ancestry cases, 32,649 East Asian ancestry controls, 46 Sub-Saharan African ancestry cases, 197 Sub-Saharan African ancestry controls	NA	9p21.3	CDKN2B-AS1	rs1333037-T	NR	4E-49		1.68708	[1.62-1.76]	Illumina [NR] (imputed)	N
753	chr9	22040764	22040765	rs1333037	29891935	Choquet H	2018-06-11	Nat Commun	A multiethnic genome-wide association study of primary open-angle glaucoma identifies novel risk loci.	Glaucoma (primary open-angle)	6,687 European ancestry cases, 155,514 European ancestry controls, 204 South Asian ancestry cases, 4,916 South Asian ancestry controls, 272 African British cases, 4,831 African British controls, 22 East Asian ancestry cases, 873 East Asian ancestry controls, 144 mixed ancestry cases, 3,427 mixed ancestry controls	3,836 European ancestry cases, 48,065 European ancestry controls, 411 Hispanic cases, 4,778 Hispanic controls, 441 East Asian ancestry cases, 4,034 East Asian ancestry controls, 298 African American cases, 1,549 African American controls	9p21.3	CDKN2B-AS1	rs1333037-T		2E-23		1.1904762		NR [NR] (imputed)	N
753	chr9	22040764	22040765	rs1333037	26752265	Bailey JN	2016-01-11	Nat Genet	Genome-wide association analysis identifies TXNRD2, ATXN2 and FOXC1 as susceptibility loci for primary open-angle glaucoma.	Glaucoma (low intraocular pressure)	725 European ancestry cases, 11,145 European ancestry controls	363 European ancestry cases	9p21.3	CDKN2B-AS1	rs1333037-T		1E-12		1.67		Affymetrix, Illumina [6425680] (imputed)	N
753	chr9	22041997	22041998	rs17694493	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	9p21.3	NR	rs17694493-G	NR	1E-12		1.074	[1.05-1.09]	Affymetrix, Illumina [29235255] (imputed)	N
753	chr9	22041997	22041998	rs17694493	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	9p21.3	NR	rs17694493-?	NR	1E-6				Affymetrix [NR]	N
753	chr9	22041997	22041998	rs17694493	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	9p21.3	NR	rs17694493-G	0.14	2E-10		1.08	[1.05-1.10]	Illumina [20370935] (imputed)	N
753	chr9	22041997	22041998	rs17694493	25217961	Al Olama AA	2014-09-14	Nat Genet	A meta-analysis of 87,040 individuals identifies 23 new susceptibility loci for prostate cancer.	Prostate cancer	34,379 European ancestry cases, 33,164 European ancestry controls, 5,327 African ancestry cases, 5,136 African ancestry controls, 2,563 Japanese ancestry cases, 4,391 Japanese ancestry controls, 1,034 Latino cases, 1,046 Latino controls	NA	9p21.3	CDKN2B-AS1	rs17694493-G	0.14	4E-8	(EA)	1.1	[1.06-1.13]	Affymetrix, Illumina [up to 16852405] (imputed)	N
753	chr9	22041997	22041998	rs17694493	25217961	Al Olama AA	2014-09-14	Nat Genet	A meta-analysis of 87,040 individuals identifies 23 new susceptibility loci for prostate cancer.	Prostate cancer	34,379 European ancestry cases, 33,164 European ancestry controls, 5,327 African ancestry cases, 5,136 African ancestry controls, 2,563 Japanese ancestry cases, 4,391 Japanese ancestry controls, 1,034 Latino cases, 1,046 Latino controls	NA	9p21.3	CDKN2B-AS1	rs17694493-G	0.14	1E-6		1.08	[1.05-1.11]	Affymetrix, Illumina [up to 16852405] (imputed)	N
753	chr9	22043611	22043612	rs1412830	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	9p21.3	CDKN2A, CDKN2B	rs1412830-C	0.6278	9E-8		1.04	[1.02-1.05]	Affymetrix, Illumina [~ 27000000] (imputed)	N
753	chr9	22043925	22043926	rs1412829	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls	NA	9p21.3	CDKN2B-AS1	rs1412829-A	NR	1E-27		1.39445	[1.33-1.45]	Illumina [11610548] (imputed)	N
753	chr9	22043925	22043926	rs1412829	26545403	Bei JX	2016-01-01	Cancer Epidemiol Biomarkers Prev	A GWAS Meta-analysis and Replication Study Identifies a Novel Locus within CLPTM1L/TERT Associated with Nasopharyngeal Carcinoma in Individuals of Chinese Ancestry.	Nasopharyngeal carcinoma	2,152 Chinese ancestry cases, 3,740 Chinese ancestry controls	4,716 Chinese ancestry cases, 5,379 Chinese ancestry controls	9p21.3	CDKN2A, CDKN2B	rs1412829-?	NR	3E-8		1.25		Illumina [Sequenom custom array used in replication] (imputed)	N
753	chr9	22043925	22043926	rs1412829	20512145	Bei JX	2010-05-30	Nat Genet	A genome-wide association study of nasopharyngeal carcinoma identifies three new susceptibility loci.	Nasopharyngeal carcinoma	1,583 Chinese ancestry cases, 1,894 Chinese ancestry controls	3,507 Chinese ancestry cases, 3,063 Chinese ancestry controls, 284  Chinese ancestry trios	9p21.3	CDKN2B, CDNK2A	rs1412829-?	0.89	5E-7		1.28	[1.18-1.41]	Illumina [464328]	N
753	chr9	22043925	22043926	rs1412829	19578366	Wrensch M	2009-07-05	Nat Genet	Variants in the CDKN2B and RTEL1 regions are associated with high-grade glioma susceptibility.	Glioma (high-grade)	692 European ancestry cases, 3,992 European ancestry controls	176 cases, 174 controls	9p21.3	intergenic	rs1412829-C	0.39	2E-10		1.42	[1.27-1.58]	Illumina [326506]	N
753	chr9	22045316	22045317	rs1360589	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Vertical cup-disc ratio	25,180 European ancestry individuals	NA	9p21.3	CDKN2B-AS1	rs1360589-C	0.433	5E-30		0.015	[0.013-0.017] unit decrease	Affymetrix, Illumina [11901698] (imputed)	N
753	chr9	22045316	22045317	rs1360589	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Optic cup area	24,493 European ancestry individuals	NA	9p21.3	CDKN2B-AS1	rs1360589-C	0.435	1E-31		0.026	[0.022-0.03] mm2 decrease	Affymetrix, Illumina [11830838] (imputed)	N
753	chr9	22045316	22045317	rs1360589	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (antiglaucoma preparations and miotics)	5,215 European ancestry cases, 95,653 European ancestry controls	NA	9p21.3	CDKN2B-AS1	rs1360589-C	0.427984	2E-13		0.14782545	[0.11-0.19] unit decrease	Affymetrix [7288503] (imputed)	N
753	chr9	22045316	22045317	rs1360589	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Optic cup area	20,353 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	7,333 Asian ancestry individuals	9p21.3	CDKN2B-AS1	rs1360589-C	NR	3E-28		0.024	[0.02-0.028] unit decrease	Affymetrix, Illumina [~ 8000000] (imputed)	N
753	chr9	22045316	22045317	rs1360589	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Optic cup area	20,353 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	7,333 Asian ancestry individuals	9p21.3	CDKN2B-AS1	rs1360589-C	NR	3E-27	(EA)	0.025	[0.021-0.029] unit decrease	Affymetrix, Illumina [~ 8000000] (imputed)	N
753	chr9	22047944	22047945	rs10120806	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glaucoma	10,411 European ancestry cases, 474,568 European ancestry controls, 8,448 East Asian ancestry cases, 168,903 East Asian ancestry controls	NA	9p21.3		rs10120806-C	NR	4E-39		0.1602	[0.14-0.18] unit increase	Affymetrix, Illumina [25844939] (imputed)	N
753	chr9	22048390	22048391	rs7027950	33549134	Adolphe C	2021-02-06	Genome Med	Genetic and functional interaction network analysis reveals global enrichment of regulatory T cell genes influencing basal cell carcinoma susceptibility.	Basal cell carcinoma	17,416 European ancestry cases, 375,455 European ancestry controls	NA	9p21.3	CDKN2B-AS1	rs7027950-T	0.474682	2E-28		0.120776474	[0.099-0.142] unit decrease	Affymetrix [7260263] (imputed)	N
753	chr9	22049129	22049130	rs10738605	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Non-melanoma skin cancer	5,912 European ancestry cases, 181,740 European ancestry controls		9p21.3	CDKN2B	rs10738605-G	NR	6E-10		1.13	[1.08-1.17]	Affymetrix [5734850] (imputed)	N
753	chr9	22049655	22049656	rs10811645	29891935	Choquet H	2018-06-11	Nat Commun	A multiethnic genome-wide association study of primary open-angle glaucoma identifies novel risk loci.	Glaucoma (primary open-angle)	3,836 European ancestry cases, 48,065 European ancestry controls, 411 Hispanic cases, 4,778 Hispanic controls, 441 East Asian ancestry cases, 4,034 East Asian ancestry controls, 298 African American cases, 1,549 African American controls	6,687 European ancestry cases, 155,514 European ancestry controls, 204 South Asian ancestry cases, 4,916 South Asian ancestry controls, 272 African British cases, 4,831 African British controls, 22 East Asian ancestry cases, 873 East Asian ancestry controls, 144 mixed ancestry cases, 3,427 mixed ancestry controls	9p21.3	CDKN2B-AS1	rs10811645-A		1E-18		1.1627907	[1.12-1.2]	Affymetrix [at least 665500] (imputed)	N
753	chr9	22050897	22050898	rs944800	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	9p21.3	NR	rs944800-?		3E-9	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
753	chr9	22050897	22050898	rs944800	29452408	Shiga Y	2018-02-14	Hum Mol Genet	Genome-wide association study identifies seven novel susceptibility loci for primary open-angle glaucoma.	Glaucoma (primary open-angle)	3,980 Japanese ancestry cases, 18,815 Japanese ancestry controls	4,406 East Asian ancestry cases, 18,161 East Asian ancestry controls, 5,008 European ancestry cases, 35,472 European ancestry controls, 769 African American cases, 663 African American controls, 1,572 Sub-Saharan African ancestry cases, 1,374 Sub-Saharan African ancestry controls.	9p21.3	CDKN2B-AS1	rs944800-G	0.85	4E-14	(Japanese discovery)	1.33	[1.25-1.45]	Illumina [6109376] (imputed)	N
753	chr9	22051669	22051670	rs944801	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	9,179 European ancestry cases, 134,471 European ancestry controls, 1,983 East Asian ancestry cases, 13,719 East Asian ancestry controls, 127 Sub-Saharan African ancestry cases, 100 Sub-Saharan African ancestry controls	NA	9p21.3	CDKN2B-AS1	rs944801-C	NR	5E-50		1.28763	[1.25-1.32]	Illumina [NR] (imputed)	N
753	chr9	22051669	22051670	rs944801	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	23,963 European ancestry cases, 306,942 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	43,254 European ancestry cases, 1,471,118 European ancestry controls	9p21.3	CDKN2B-AS1	rs944801-C	NR	3E-90		0.146	unit increase	Illumina [15409056] (imputed)	N
753	chr9	22051669	22051670	rs944801	32902719	Hebbar P	2020-09-09	Hum Genet	Genome-wide landscape establishes novel association signals for metabolic traits in the Arab population.	Weight	2,732 Kuwaiti ancestry individuals	NA	9p21.3	CDKN2B-AS1	rs944801-?	NR	2E-6		4.781	NR unit decrease	Illumina [up to 1520000] (imputed)	N
753	chr9	22051669	22051670	rs944801	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (multi-trait analysis)	90,939 European ancestry individuals	NA	9p21.3	CDKN2B-AS1	rs944801-G	0.43	5E-91		0.02	NR unit decrease	Affymetrix, Illumina [8002429] (imputed)	N
753	chr9	22051669	22051670	rs944801	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Glaucoma (multi-trait analysis)	133,492 European ancestry individuals with intraocular pressure measurements, 90,939 European ancestry individuals with vertical cup-disc ratio measurements, 7,947 British ancestry glaucoma cases, 119,318 British ancestry controls	6,924 European ancestry glaucoma cases, 40,230 European ancestry controls	9p21.3	CDKN2B-AS1	rs944801-C	0.57	2E-38		1.1494253	NR	Affymetrix, Illumina [8002429] (imputed)	N
753	chr9	22051669	22051670	rs944801	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Glaucoma	7,947 British ancestry cases, 119,318 British ancestry controls	NA	9p21.3	CDKN2B-AS1	rs944801-C	0.57	3E-21		1.1764705	NR	Affymetrix [at least 8002429] (imputed)	N
753	chr9	22051669	22051670	rs944801	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Glaucoma	11,018 European ancestry cases, 126,068 European ancestry controls	NA	9p21.3	CDKN2B-AS1	rs944801-C	NR	8E-36		1.22	[1.17-1.27]	Affymetrix [up to 40000000] (imputed)	N
753	chr9	22051669	22051670	rs944801	29891935	Choquet H	2018-06-11	Nat Commun	A multiethnic genome-wide association study of primary open-angle glaucoma identifies novel risk loci.	Glaucoma (primary open-angle)	10,523 European ancestry cases, 203,579 European ancestry controls, 411 Hispanic cases, 4,778 Hispanic controls, 463 East Asian ancestry cases, 4,907 East Asian ancestry controls, 298 African American cases, 1,549 African American controls, 204 South Asian ancestry cases, 4,916 South Asian ancestry controls, 272 African British cases, 4,831 African British controls, 144 mixed ancestry cases, 3,427 mixed ancestry controls	NA	9p21.3	CDKN2B-AS1	rs944801-C	NR	2E-49		1.2345679	[1.2-1.27]	Affymetrix [at least 665500] (imputed)	N
753	chr9	22051669	22051670	rs944801	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	9p21.3	intergenic	rs944801-C	0.5795	1E-11	(EA)	0.0707	[0.05-0.091] unit increase	Affymetrix, Illumina [NR] (imputed)	N
753	chr9	22052067	22052068	rs62560775	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	9p21.3	CDKN2B-AS1	rs62560775-G	0.103627773	6E-7		1.1056006	[1.06285881-1.150061258]	Illumina [10439017] (imputed)	N
753	chr9	22052067	22052068	rs62560775	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung adenocarcinoma	11,273 European ancestry cases,  55,483 European ancestry controls	NA	9p21.3	CDKN2B-AS1	rs62560775-G	0.106543936	2E-9		1.1804289	[1.117964329-1.246383605]	Illumina [10439017] (imputed)	N
753	chr9	22052733	22052734	rs6475604	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antiglaucoma preparations and miotics)	5,911 East Asian ancestry cases, 172,815 East Asian ancestry controls	NA	9p21.3		rs6475604-C	0.850147778	1E-8		0.15155648	[0.099-0.204] unit increase	Illumina [13429980] (imputed)	N
753	chr9	22052733	22052734	rs6475604	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antiglaucoma preparations and miotics)	5,215 European ancestry cases, 95,653 European ancestry controls, 5,911 East Asian ancestry cases, 172,815 East Asian ancestry controls	NA	9p21.3		rs6475604-C	NR	1E-20		0.1491	[0.12-0.18] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
753	chr9	22052733	22052734	rs6475604	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	8,758 European ancestry cases, 108,815 European ancestry controls, 1,996 East Asian ancestry cases, 16,559  East Asian ancestry controls, 171 Sub-Saharan African ancestry cases, 94 Sub-Saharan African ancestry controls	NA	9p21.3	CDKN2B-AS1	rs6475604-T	NR	7E-56		0.768511	[0.74-0.8]	Illumina [NR] (imputed)	N
753	chr9	22052733	22052734	rs6475604	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	16,677 European ancestry cases, 199,580 European ancestry controls	7,286 European ancestry cases, 107,362 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	9p21.3	CDKN2B-AS1	rs6475604-T	NR	1E-91		0.764449	[0.74-0.79]	Affymetrix, Illumina [14822926] (imputed)	N
753	chr9	22052733	22052734	rs6475604	30104761	Zhou W	2018-08-13	Nat Genet	Efficiently controlling for case-control imbalance and sample relatedness in large-scale genetic association studies.	Glaucoma	4,462 European ancestry cases, 397,761 European ancestry controls	NA	9p21.3	CDKN2, BAAS1	rs6475604-C	0.430593	3E-15				Affymetrix [28000000] (imputed)	N
753	chr9	22053686	22053687	rs10965219	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	9p21.3		rs10965219-?	NR	8E-23		0.898882	[0.88-0.92]	NR [685523]	N
753	chr9	22053686	22053687	rs10965219	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Cancer	56,634 White British ancestry cases, 218,196 White British ancestry controls	NA	9p21.3		rs10965219-?	NR	2E-9		0.959993	[0.95-0.97]	NR [688737]	N
753	chr9	22053956	22053957	rs10712703	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Brain tumor	833 European ancestry cases, 490,709 European ancestry controls, 405 East Asian ancestry cases, 178,321 East Asian ancestry controls	NA	9p21.3		rs10712703-T	NR	2E-8		0.3272	[0.21-0.44] unit decrease	Affymetrix, Illumina [25845383] (imputed)	N
753	chr9	22054689	22054690	rs7874604	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Skin cancer	25,928 European ancestry cases, 466,275 European ancestry controls, 154 East Asian ancestry cases, 178,572 East Asian ancestry controls	NA	9p21.3		rs7874604-C	NR	1E-19		0.0896	[0.07-0.109] unit decrease	Affymetrix, Illumina [25845421] (imputed)	N
753	chr9	22054689	22054690	rs7874604	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Keratinocyte cancer (MTAG)	at least 18,538 European ancestry cases, at least 340,302 European ancestry controls	NA	9p21.3	CDKN2B-AS1	rs7874604-T	0.522063	6E-27		1.1	[1.08-1.12]	Affymetrix [7600000] (imputed)	N
753	chr9	22054689	22054690	rs7874604	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Basal cell carcinoma	31,787 European ancestry cases, 619,351 European ancestry controls	NA	9p21.3	CDKN2B-AS1	rs7874604-T	0.484863	4E-36		1.11	[1.10-1.13]	Affymetrix, Illumina [up to 9061544] (imputed)	N
753	chr9	22054689	22054690	rs7874604	27539887	Chahal HS	2016-08-19	Nat Commun	Genome-wide association study identifies 14 novel risk alleles associated with basal cell carcinoma.	Basal cell carcinoma	12.945 European ancestry cases, 274,252 European ancestry controls	4,242 European ancestry cases, 12,802 European ancestry controls	9p21.3	CDKN2B	rs7874604-T	0.54	5E-13		1.1	[NR]	Illumina [at least 560000] (imputed)	N
753	chr9	22056212	22056213	rs7039467	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (multi-trait analysis)	90,939 European ancestry individuals	NA	9p21.3	CDKN2B-AS1	rs7039467-A	0.69	3E-54		0.01	NR unit decrease	Affymetrix, Illumina [8002429] (imputed)	N
753	chr9	22056212	22056213	rs7039467	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (adjusted for vertical disc diameter)	67,040 British ancestry individuals	NA	9p21.3	CDKN2B-AS1	rs7039467-A	0.69	2E-37		0.01	[0.0078-0.0122] unit decrease	Affymetrix [at least 8002429] (imputed)	N
753	chr9	22056212	22056213	rs7039467	31413261	Deelen J	2019-08-14	Nat Commun	A meta-analysis of genome-wide association studies identifies multiple longevity genes.	Longevity (age >99th survival percentile)	3,484 European ancestry cases, 2,178 East Asian ancestry cases, 25,483 European ancestry controls, 2,299 East Asian ancestry controls	NA	9p21.3	CDKN2A/B	rs7039467-A	0.48	2E-7		1.2	1.12-1.28	Illumina [up to 9449311] (imputed)	N
753	chr9	22056294	22056295	rs7853090	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (high intraocular pressure)	3,376 European ancestry cases, 15,151 European ancestry controls, 1,516 East Asian ancestry cases, 32,649 East Asian ancestry controls, 252 Sub-Saharan African ancestry cases, 197 Sub-Saharan African ancestry controls	NA	9p21.3	CDKN2B-AS1	rs7853090-T	NR	8E-23		0.760256	[0.71-0.81]	Illumina [NR] (imputed)	N
753	chr9	22056358	22056359	rs7866783	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (adjusted for vertical disc diameter)	67,040 British ancestry individuals	NA	9p21.3	CDKN2B-AS1	rs7866783-A	0.43	5E-64		0.02	[0.018-0.022] unit decrease	Affymetrix [at least 8002429] (imputed)	N
753	chr9	22056358	22056359	rs7866783	27623284	Verma SS	2016-09-13	PLoS Genet	Epistatic Gene-Based Interaction Analyses for Glaucoma in eMERGE and NEIGHBOR Consortium.	Glaucoma (primary open-angle)	14 Black cases, 922 European ancestry cases, 25 cases, 82 Black controls, 3,918 European ancestry controls, 129 controls	NA	9p21.3	CDKN2B-AS	rs7866783-?	NR	4E-8		1.34	[NR]	NR [2914185]	N
753	chr9	22056498	22056499	rs10120688	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	9p21.3	NR	rs10120688-?		2E-12	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
753	chr9	22056498	22056499	rs10120688	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	9p21.3	NR	rs10120688-?		1E-8	(Genu of corpus callosum)			NR [8955960] (imputed)	N
753	chr9	22056498	22056499	rs10120688	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	9p21.3	NR	rs10120688-?		1E-8	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
753	chr9	22056498	22056499	rs10120688	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	9p21.3	NR	rs10120688-?		1E-8	(Genu of corpus callosum)			NR [8955960] (imputed)	N
753	chr9	22056498	22056499	rs10120688	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	9p21.3	NR	rs10120688-?		5E-12	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
753	chr9	22062133	22062134	rs1011970	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	9p21.3	CDKN2A, CDKN2B	rs1011970-T	0.16	1E-15	(EA)	1.07	[1.04-1.09] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
753	chr9	22062133	22062134	rs1011970	29058716	Milne RL	2017-10-23	Nat Genet	Identification of ten variants associated with risk of estrogen-receptor-negative breast cancer.	Breast cancer (estrogen-receptor negative)	14,135 European ancestry cases, 58,126 European ancestry controls	7,333 European ancestry cases, 42,468 European ancestry controls	9p21.3	NR	rs1011970-T	0.16	5E-7		1.05	[1.00-1.09] (Oncoarray)	Illumina [~ 11500000] (imputed)	N
753	chr9	22062133	22062134	rs1011970	27197191	Fehringer G	2016-04-20	Cancer Res	Cross-Cancer Genome-Wide Analysis of Lung, Ovary, Breast, Prostate, and Colorectal Cancer Reveals Novel Pleiotropic Associations.	Cancer (pleiotropy)	5,020 European ancestry lung cancer cases, 3,718 European ancestry lung adenocarcinoma cases, 3,422 European ancestry lung squamous cell carcinoma cases, 15,414 European ancestry colorectal cancer cases, 10,809 European ancestry breast cancer cases, 4,939 European ancestry estrogen receptor negative breast cancer cases, 1,098 European ancestry ovarian cancer cases, 2,556 European ancestry serous ovarian cancer cases, 715 European ancestry ovarian endometrioid carcinoma cases, 9,710 European ancestry prostate cancer cases, 4,450 European ancestry aggressive prostate cancer cases,  61,820 European ancestry controls	NA	9p21.3	CDKN2B, AS1	rs1011970-T	NR	5E-6	(subset analysis)			Affymetrix, Illumina [9916564] (imputed)	N
753	chr9	22062133	22062134	rs1011970	27197191	Fehringer G	2016-04-20	Cancer Res	Cross-Cancer Genome-Wide Analysis of Lung, Ovary, Breast, Prostate, and Colorectal Cancer Reveals Novel Pleiotropic Associations.	Cancer	5,020 European ancestry lung cancer cases, 3,718 European ancestry lung adenocarcinoma cases, 3,422 European ancestry lung squamous cell carcinoma cases, 15,414 European ancestry colorectal cancer cases, 10,809 European ancestry breast cancer cases, 4,939 European ancestry estrogen receptor negative breast cancer cases, 1,098 European ancestry ovarian cancer cases, 2,556 European ancestry serous ovarian cancer cases, 715 European ancestry ovarian endometrioid carcinoma cases, 9,710 European ancestry prostate cancer cases, 4,450 European ancestry aggressive prostate cancer cases,  61,820 European ancestry controls	NA	9p21.3	CDKN2B, AS1	rs1011970-T	NR	2E-7		1.1	[NR]	Affymetrix, Illumina [9916564] (imputed)	N
753	chr9	22062133	22062134	rs1011970	27117709	Couch FJ	2016-04-27	Nat Commun	Identification of four novel susceptibility loci for oestrogen receptor negative breast cancer.	Breast cancer (estrogen-receptor negative)	4,939 European ancestry cases, 14,352 European ancestry controls	7,333 European ancestry cases, 42,468 European ancestry controls	9p21.3	NR	rs1011970-?	0.17	2E-6		1.11	[1.06-1.15]	Illumina [10909381] (imputed)	N
753	chr9	22062133	22062134	rs1011970	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	15,748 European ancestry cases, 18,084 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls	9p21.3	NR	rs1011970-T	0.17	4E-9		1.06	[1.03-1.08]	Affymetrix, Illumina [~ 11600000] (imputed)	N
753	chr9	22062133	22062134	rs1011970	23535729	Michailidou K	2013-04-01	Nat Genet	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	9p21.3	CDKN2A, CDKN2B	rs1011970-T	0.17	6E-8		1.06	[1.03-1.08]	Affymetrix, Illumina [~ 2600000] (imputed)	N
753	chr9	22062133	22062134	rs1011970	20453838	Turnbull C	2010-05-09	Nat Genet	Genome-wide association study identifies five new breast cancer susceptibility loci.	Breast cancer	3,659 European ancestry cases, 4,897 European ancestry controls	12,576 European ancestry cases, 12,223 European ancestry controls	9p21.3	CDKN2A, CDKN2B	rs1011970-T	0.17	3E-8		1.09	[1.04-1.14]	Illumina [582886]	N
753	chr9	22064464	22064465	rs8181047	34642315	Ferreiro-Iglesias A	2021-10-12	Nat Commun	Germline determinants of humoral immune response to HPV-16 protect against oropharyngeal cancer.	Oropharynx cancer and human papilloma virus 16 negative oropharyngeal cancer	2,359 European ancestry cases, 565 European ancestry controls	NA	9p21.3		rs8181047-G	NR	1E-7		1.2167		Illumina [up to 7574753] (imputed)	N
753	chr9	22064464	22064465	rs8181047	27749845	Lesseur C	2016-10-17	Nat Genet	Genome-wide association analyses identify new susceptibility loci for oral cavity and pharyngeal cancer.	Oral cavity cancer	2,717 European ancestry cases, 273 cases, 5,984 European ancestry controls, 601 controls	NA	9p21.3	CDKN2B-AS1	rs8181047-A	0.24	4E-9		1.24	NR	Illumina [7574753] (imputed)	N
753	chr9	22066211	22066213	rs145929329	26424050	Kinnersley B	2015-10-01	Nat Commun	Genome-wide association study identifies multiple susceptibility loci for glioma.	Glioblastoma	1,783 Northern European ancestry cases, 7,435 Northern European ancestry controls	up to 1,490 European ancestry cases, up to 1,723 European ancestry controls	9p21.3	NR	rs145929329-ATT	NR	5E-12		1.35	[1.24-1.47]	Illumina [at least 8427548] (imputed)	N
753	chr9	22067592	22067593	rs10811650	32469254	Matsunaga H	2020-05-29	Circ Genom Precis Med	Transethnic Meta-analysis of Genome-wide Association Studies Identifies Three New Loci and Characterizes Population-specific Differences for Coronary Artery Disease.	Coronary artery disease	15,302 Japanese ancestry cases, 76,014 European and East Asian ancestry cases, 36,140 Japanese ancestry controls, 264,785 European and East Asian ancestry controls	NA	9p21.3	CDKN2B-AS1	rs10811650-G	0.44	2E-71		1.15	[1.13-1.17]	Illumina [5167567] (imputed)	N
753	chr9	22067592	22067593	rs10811650	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous melanoma or hair colour	36,760 European ancestry cutaneous melanoma cases, 375,188 European ancestry controls, 352,662 European ancestry individuals	NA	9p21.3	CDKN2B-AS1	rs10811650-A	0.564121	2E-18				Affymetrix, Illumina [NR] (imputed)	N
753	chr9	22067592	22067593	rs10811650	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	9p21.3		rs10811650-?	NR	2E-15				NR [~ 8900000] (imputed)	N
753	chr9	22067592	22067593	rs10811650	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	9p21.3	NR	rs10811650-G	0.4205	2E-13	(EA)	0.0461	[0.034-0.058] unit decrease	Illumina [~ 11800000] (imputed)	N
753	chr9	22067909	22067910	rs75883022	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Endometrial cancer	2,037 European ancestry cases, 410,350 European ancestry controls	NA	9p21.3		rs75883022-T	0.02319	1E-7		1.5898252	NR	Affymetrix [7846216] (imputed)	N
753	chr9	22067909	22067910	rs75883022	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous malignant melanoma	36,760 European ancestry cases, 375,188 European ancestry controls	NA	9p21.3	CDKN2B-AS1	rs75883022-T	0.0211	7E-13		1.2615113	NR	Affymetrix, Illumina [NR] (imputed)	N
753	chr9	22068651	22068652	rs4977756	26545403	Bei JX	2016-01-01	Cancer Epidemiol Biomarkers Prev	A GWAS Meta-analysis and Replication Study Identifies a Novel Locus within CLPTM1L/TERT Associated with Nasopharyngeal Carcinoma in Individuals of Chinese Ancestry.	Nasopharyngeal carcinoma	2,152 Chinese ancestry cases, 3,740 Chinese ancestry controls	4,716 Chinese ancestry cases, 5,379 Chinese ancestry controls	9p21.3	CDKN2A, CDKN2B	rs4977756-?	NR	7E-7		1.1494253		Illumina [Sequenom custom array used in replication] (imputed)	N
753	chr9	22068651	22068652	rs4977756	25173105	Gharahkhani P	2014-08-31	Nat Genet	Common variants near ABCA1, AFAP1 and GMDS confer risk of primary open-angle glaucoma.	Glaucoma (primary open-angle)	1,155 European ancestry cases, 1,922 European ancestry controls	3,548 European ancestry cases, 9,496 European ancestry controls	9p21.3	CDKN2B-AS1	rs4977756-A	NR	7E-30		1.48	[1.42-1.54]	Illumina [7594768] (imputed)	N
753	chr9	22068651	22068652	rs4977756	22886559	Rajaraman P	2012-08-11	Hum Genet	Genome-wide association study of glioma and meta-analysis.	Glioma	1,856 European ancestry cases, 4,955 European ancestry controls	5,015 European ancestry cases, 11,601 European ancestry controls	9p21.3	CDKN2BAS	rs4977756-G	.423	1E-8		1.283	[1.177-1.398]	Illumina [559977]	N
753	chr9	22068651	22068652	rs4977756	21532571	Burdon KP	2011-05-01	Nat Genet	Genome-wide association study identifies susceptibility loci for open angle glaucoma at TMCO1 and CDKN2B-AS1.	Glaucoma	590 European ancestry cases, 3,956 European ancestry controls	892 European ancestry advanced cases, 4,582 European ancestry less severe cases	9p21.3	CDKN2B-AS1	rs4977756-A	0.60	1E-14		1.39	[1.28-1.51]	Illumina [298778]	N
753	chr9	22068651	22068652	rs4977756	19578367	Shete S	2009-07-05	Nat Genet	Genome-wide association study identifies five susceptibility loci for glioma.	Glioma	1,878 European ancestry cases, 3,670 European ancestry controls	2,545 European ancestry cases, 2,953 European ancestry controls	9p21.3	CDKN2A, CDKN2B	rs4977756-G	0.60	7E-15		1.24	[1.19-1.30]	Illumina [454576]	N
753	chr9	22071750	22071751	rs4645630	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	9p21.3	CDKN2B-AS1	rs4645630-?	NR	2E-8		0.386	[0.25-0.52] unit increase	Affymetrix [11100000] (imputed)	N
753	chr9	22072263	22072264	rs10757269	34601942	van Zuydam NR	2021-10-04	Circ Genom Precis Med	Genome-Wide Association Study of Peripheral Artery Disease.	Peripheral artery disease in ever smokers	7,404 Finnish ancestry cases, 205,693 Finnish ancestry controls, 7,404 non-Scandinavian ancestry cases, 205,693 non-Scandinavian ancestry controls, 7,404 British ancestry cases, 205,693 British ancestry controls	NA	9p21.3		rs10757269-G	0.47	4E-10		1.13	[1.08-1.18]	Affymetrix, Illumina [NR] (imputed)	N
753	chr9	22072263	22072264	rs10757269	22199011	Murabito JM	2011-12-23	Circ Cardiovasc Genet	Association between chromosome 9p21 variants and the ankle-brachial index identified by a meta-analysis of 21 genome-wide association studies.	Ankle-brachial index	38,376 European ancestry individuals, 2,133 Erasmus Rucphen individuals, 1,183 Old Order Amish individuals	16,717 European ancestry individuals	9p21.3	CDKN2B	rs10757269-G	0.5	9E-9		0.0045	[0.0029-0.0061] unit decrease	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
753	chr9	22072300	22072301	rs9632884	30510157	Franceschini N	2018-12-03	Nat Commun	GWAS and colocalization analyses implicate carotid intima-media thickness and carotid plaque loci in cardiovascular outcomes.	Carotid plaque	Up to 21,540 European ancestry cases, up to 26,894 European ancestry controls	NA	9p21.3	9p21	rs9632884-C	0.48	5E-12		0.1127	[0.081-0.145] unit increase	Affymetrix, Illumina [8578107] (imputed)	N
753	chr9	22076070	22076071	rs1831733	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Coronary heart disease x type 2 diabetes interaction	56,285 European ancestry coronary heart disease cases, 140,945 European ancestry controls	NA	9p21.3	CDKN2B, CDKN2A	rs1831733-C	0.482	2E-13				Affymetrix [at least 723305] (imputed)	N
753	chr9	22076070	22076071	rs1831733	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (salicylic acid and derivatives)	61,583 European ancestry cases, 50,427 European ancestry controls	NA	9p21.3	CDKN2B-AS1	rs1831733-C	0.483126	9E-9		0.045792654	[0.03-0.061] unit increase	Affymetrix [7288503] (imputed)	N
753	chr9	22076070	22076071	rs1831733	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (antithrombotic agents)	67,653 European ancestry cases, 85,986 European ancestry controls	NA	9p21.3	CDKN2B-AS1	rs1831733-C	0.480371	4E-18		0.05889579	[0.046-0.072] unit increase	Affymetrix [7288503] (imputed)	N
753	chr9	22076794	22076795	rs10757271	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Peripheral artery disease	7,114 European ancestry cases, 475,964 European ancestry controls, 4,112 East Asian ancestry cases, 173,601 East Asian ancestry controls	NA	9p21.3		rs10757271-G	NR	2E-22		0.1452	[0.12-0.17] unit increase	Affymetrix, Illumina [25844651] (imputed)	N
753	chr9	22077084	22077085	rs10811652	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	9p21.3		rs10811652-C	NR	3E-18		0.0174	[0.013-0.021] unit decrease	Affymetrix, Illumina [20536134] (imputed)	N
753	chr9	22077084	22077085	rs10811652	30003307	Fall T	2018-07-12	Diabetologia	Genome-wide association study of coronary artery disease among individuals with diabetes: the UK Biobank.	Coronary artery disease in diabetes	3,968 British ancestry cases, 11,698 British ancestry controls	NA	9p21.3	CDKN2B-AS1	rs10811652-C	NR	6E-11		1.19	[1.13-1.26]	Affymetrix [9087334] (imputed)	N
753	chr9	22081849	22081850	rs6475606	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	9p21.3		rs6475606-T	NR	1E-19		0.0195	[0.015-0.024] unit decrease	Affymetrix, Illumina [20521447] (imputed)	N
753	chr9	22081849	22081850	rs6475606	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	9p21.3	RP11-145E5.5	rs6475606-C	0.515533	2E-22		0.02031	[0.016-0.024] unit increase	Affymetrix [NR] (imputed)	N
753	chr9	22081849	22081850	rs6475606	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	9p21.3	RP11-145E5.5	rs6475606-C	0.51553	6E-17		0.0173839	[0.013-0.021] unit increase	Affymetrix [NR] (imputed)	N
753	chr9	22081849	22081850	rs6475606	22961961	Foroud T	2012-09-06	Stroke	Genome-wide association study of intracranial aneurysms confirms role of Anril and SOX17 in disease risk.	Intracranial aneurysm	1,483 European ancestry cases, 1,683 European ancestry controls	NA	9p21.3	CDKN2B-AS1	rs6475606-T	0.48	4E-8		1.35	[NR]	Affymetrix [451088]	N
753	chr9	22083403	22083404	rs1333040	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Squamous cell lung carcinoma	7,426 European ancestry cases, 55,627 European ancestry controls	NA	9p21.3	CDKN2B-AS1	rs1333040-C	0.457931886	7E-7		1.098154	[1.058273274-1.13953745]	Illumina [10439017] (imputed)	N
753	chr9	22083403	22083404	rs1333040	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-6 levels	8,189 Finnish ancestry individuals	NA	9p21.3	NR	rs1333040-C	NR	3E-6		0.0738	[0.043-0.105] SD units decrease	NR [10700000] (imputed)	N
753	chr9	22083403	22083404	rs1333040	20364137	Yasuno K	2010-04-04	Nat Genet	Genome-wide association study of intracranial aneurysm identifies three new risk loci.	Intracranial aneurysm	2,780 European ancestry cases, 12,515 European ancestry controls	3,111 Japanese ancestry cases, 1,666 Japanese ancestry controls	9p21.3	CDKN2A, CDKN2B	rs1333040-T	0.56	2E-22		1.32	[1.25-1.39]	Illumina [831534] (imputed)	N
753	chr9	22083403	22083404	rs1333040	18997786	Bilguvar K	2008-11-09	Nat Genet	Susceptibility loci for intracranial aneurysm in European and Japanese populations.	Intracranial aneurysm	1,580 European ancestry cases, 6,276 European ancestry controls	495 Japanese ancestry cases, 676 Japanese ancestry controls	9p21.3	CDKN2A, CDKN2B	rs1333040-T	0.55	1E-10		1.29	[1.19-1.40]	Illumina [289271]	N
753	chr9	22084309	22084310	rs1537370	23561647	van Setten J	2013-03-13	Atherosclerosis	Genome-wide association study of coronary and aortic calcification implicates risk loci for coronary artery disease and myocardial infarction.	Coronary artery calcification	2,620 European ancestry males	NA	9p21.3	CDKN2A, CDKN2B	rs1537370-T	0.46	2E-11		0.532	[0.38-0.69] unit increase	Illumina [2500000] (imputed)	N
753	chr9	22085597	22085598	rs1970112	32077919	Antikainen AAV	2020-02-20	Cardiovasc Res	Genome-wide association study on coronary artery disease in type 1 diabetes suggests beta-defensin 127 as a risk locus.	Coronary artery disease in type 1 diabetes	941 European ancestry cases, 3,928 European ancestry controls	434 cases, 3,123 controls	9p21.3	CDKN2B-AS1	rs1970112-C	0.41	1E-8		1.27	[1.17-1.38]	Illumina [8744746] (imputed)	N
753	chr9	22087472	22087473	rs7857345	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	9p21.3	NR	rs7857345-T	0.3	6E-10		1.11	[1.07-1.15]	Illumina [8468885] (imputed)	N
753	chr9	22087472	22087473	rs7857345	32469254	Matsunaga H	2020-05-29	Circ Genom Precis Med	Transethnic Meta-analysis of Genome-wide Association Studies Identifies Three New Loci and Characterizes Population-specific Differences for Coronary Artery Disease.	Coronary artery disease	15,302 Japanese ancestry cases, 36,140 Japanese ancestry controls	NA	9p21.3	CDKN2B-AS1	rs7857345-C	0.66	1E-21		1.22	[1.17-1.26]	Illumina [5932413] (imputed)	N
753	chr9	22088089	22088090	rs10738606	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Subarachnoid hemorrhage	1,203 East Asian ancestry cases, 152,022 East Asian ancestry controls	NA	9p21.3		rs10738606-T	0.650153009	5E-8		0.23671386	[0.15-0.32] unit increase	Illumina [13425781] (imputed)	N
753	chr9	22088093	22088094	rs10738607	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	9p21.3	CDKN2B-AS1	rs10738607-A	0.5451	2E-9		0.0129	[0.0088-0.017] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
753	chr9	22088093	22088094	rs10738607	26708285	Wakil SM	2016-02-01	Atherosclerosis	A genome-wide association study reveals susceptibility loci for myocardial infarction/coronary artery disease in Saudi Arabs.	Myocardial infarction	2,563 Saudi Arab ancestry cases, 1,868 Saudi Arab ancestry controls	866 Saudi Arab ancestry cases, 371 Saudi Arab ancestry controls	9p21.3	CDKN2A, CDKN2AB	rs10738607-G	0.63	7E-13		1.2658228	[NR]	Affymetrix [537798]	N
753	chr9	22088093	22088094	rs10738607	26708285	Wakil SM	2016-02-01	Atherosclerosis	A genome-wide association study reveals susceptibility loci for myocardial infarction/coronary artery disease in Saudi Arabs.	Coronary artery disease	2,165 Saudi Arab ancestry cases, 2,266 Saudi Arab ancestry controls	503 Saudi Arab ancestry cases, 734 Saudi Arab ancestry controls	9p21.3	CDKN2A, CDKN2B	rs10738607-G	0.64	2E-13		1.2820514	[NR]	Affymetrix [537798]	N
753	chr9	22088259	22088260	rs10757272	34601942	van Zuydam NR	2021-10-04	Circ Genom Precis Med	Genome-Wide Association Study of Peripheral Artery Disease.	Peripheral artery disease in ever smokers	7,404 Finnish ancestry cases, 205,693 Finnish ancestry controls, 7,404 non-Scandinavian ancestry cases, 205,693 non-Scandinavian ancestry controls, 7,404 British ancestry cases, 205,693 British ancestry controls	NA	9p21.3		rs10757272-T	0.46	1E-13		1.15	[1.11-1.2]	Affymetrix, Illumina [NR] (imputed)	N
753	chr9	22088259	22088260	rs10757272	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls, 49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	9p21.3		rs10757272-T	NR	3E-10		0.037	[0.025-0.049] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
753	chr9	22088259	22088260	rs10757272	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls, 20,367 East Asian ancestry cases, 158,359 East Asian ancestry controls	NA	9p21.3		rs10757272-T	NR	1E-26		0.0714	[0.058-0.085] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
753	chr9	22088259	22088260	rs10757272	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	9p21.3		rs10757272-T	NR	1E-16		0.0411	[0.031-0.051] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
753	chr9	22088259	22088260	rs10757272	28537267	Sapkota Y	2017-05-24	Nat Commun	Meta-analysis identifies five novel loci associated with endometriosis highlighting key genes involved in hormone metabolism.	Endometriosis	14,926 European ancestry cases, 189,715 European ancestry controls, 2,119 Japanese ancestry cases, 2,143 Japanese ancestry controls	NA	9p21.3	CDKN2B-AS1	rs10757272-C	0.504	6E-6	(EA)	1.06	1.04-1.09	Affymetrix, Illumina [up to 6979035] (imputed)	N
753	chr9	22088259	22088260	rs10757272	28537267	Sapkota Y	2017-05-24	Nat Commun	Meta-analysis identifies five novel loci associated with endometriosis highlighting key genes involved in hormone metabolism.	Endometriosis	14,926 European ancestry cases, 189,715 European ancestry controls, 2,119 Japanese ancestry cases, 2,143 Japanese ancestry controls	NA	9p21.3	CDKN2B-AS1	rs10757272-C	0.504	3E-7		1.07	1.04-1.10	Affymetrix, Illumina [up to 6979035] (imputed)	N
753	chr9	22088259	22088260	rs10757272	22286173	Low SK	2012-01-27	Hum Mol Genet	Genome-wide association study for intracranial aneurysm in the Japanese population identifies three candidate susceptible loci and a functional genetic variant at EDNRA.	Intracranial aneurysm	1,383 Japanese ancestry cases, 5,484 Japanese ancestry controls	1,048 Japanese ancestry cases, 7,212 Japanese ancestry controls	9p21.3	CDKN2BAS	rs10757272-T	0.649	2E-7		1.213	[1.133-1.30]	Illumina [565149]	N
753	chr9	22090934	22090935	rs9644861	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	28,092 non-Hispanic White ancestry cases, 50,487 non-Hispanic White ancestry controls, 31,852 European ancestry cases, 428,084 European ancestry controls	NA		NR	rs9644861-T	NR	2E-15	(conditional)	0.055	[0.041-0.069] unit increase	Affymetrix [9869154] (imputed)	N
753	chr9	22090934	22090935	rs9644861	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Diastolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals		CDKN2B-AS1	rs9644861-C	0.515	5E-8		0.1397	[0.09-0.19] mmHg decrease	Affymetrix [NR] (imputed)	N
753	chr9	22090935	22090936	rs9644862	28282560	Pott J	2017-02-24	Atherosclerosis	Genome-wide meta-analysis identifies novel loci of plaque burden in carotid artery.	Carotid plaque burden	7,189 European ancestry individuals	NA	9p21.3	CDKN2B-AS1, CDKN2B	rs9644862-G	NR	9E-12		0.13116623	[0.094-0.169] unit increase	Affymetrix [9576485] (imputed)	N
753	chr9	22091923	22091924	rs7866503	27418160	van 't Hof FN	2016-07-14	J Am Heart Assoc	Shared Genetic Risk Factors of Intracranial, Abdominal, and Thoracic Aneurysms.	Intracranial, abdominal aortic or thoracic aortic aneurysm (pleiotropy)	1,516 European ancestry intracranial aneurysm cases, 818 European ancestry abdominal aortic aneurysm cases, 760 European ancestry thoracic aortic aneurysm cases, 9,507 European ancestry controls	NA	9p21.3	CDKN2B, CDKN2BAS, CDKN2A	rs7866503-T	0.416	2E-13		1.26	[1.20-1.32]	Illumina [9245988] (imputed)	N
753	chr9	22092923	22092924	rs10811654	34671089	Hikino K	2021-10-21	J Hum Genet	Genome-wide association study of colorectal polyps identified highly overlapping polygenic architecture with colorectal cancer.	Colorectal cancer	6,845 East Asian ancestry cases, 80,764 East Asian ancestry controls	NA	9p21.3		rs10811654-?	NR	1E-8		0.9	[0.87-0.93]	Illumina [NR] (imputed)	N
753	chr9	22092923	22092924	rs10811654	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Unstable angina pectoris	5,891 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	9p21.3		rs10811654-G	0.46784981	8E-24		0.1965599	[0.16-0.23] unit increase	Illumina [13425416] (imputed)	N
753	chr9	22092923	22092924	rs10811654	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (salicylic acid and derivatives)	61,583 European ancestry cases, 50,427 European ancestry controls, 41,461 East Asian ancestry cases, 137,265 East Asian ancestry controls	NA	9p21.3		rs10811654-G	NR	2E-31		0.0987	[0.082-0.115] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
753	chr9	22092923	22092924	rs10811654	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Colorectal cancer	8,305 East Asian ancestry cases, 159,386 East Asian ancestry controls	NA	9p21.3		rs10811654-G	0.476530918	1E-9		0.10056386	[0.068-0.133] unit decrease	Illumina [13428297] (imputed)	N
753	chr9	22092923	22092924	rs10811654	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Colorectal cancer	6,581 European ancestry cases, 463,421 European ancestry controls, 8,305 East Asian ancestry cases, 159,386 East Asian ancestry controls	NA	9p21.3		rs10811654-G	NR	2E-9		0.0736	[0.05-0.098] unit decrease	Affymetrix, Illumina [25843452] (imputed)	N
753	chr9	22092923	22092924	rs10811654	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 142,336 Japanese ancestry controls	NA	9p21.3	CDKN2B-AS1	rs10811654-?	NR	6E-71		0.175847	[0.16-0.2] unit increase	Illumina [19707525] (imputed)	N
753	chr9	22092923	22092924	rs10811654	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Colorectal cancer	7,062 Japanese ancestry cases, 195,745 Japanese ancestry controls	NA	9p21.3		rs10811654-G	0.47237368	4E-9		0.9026533	[0.872332719-0.934027684]	Illumina [8919992] (imputed)	N
753	chr9	22096054	22096055	rs10757274	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Unstable angina pectoris	9,481 European ancestry cases, 446,987 European ancestry controls, 5,891 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	9p21.3		rs10757274-G	NR	2E-52		0.1909	[0.17-0.22] unit increase	Affymetrix, Illumina [25840389] (imputed)	N
753	chr9	22096054	22096055	rs10757274	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Stable angina pectoris	18,833 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	9p21.3		rs10757274-G	0.468533833	5E-38		0.15267234	[0.13-0.18] unit increase	Illumina [13427711] (imputed)	N
753	chr9	22096054	22096055	rs10757274	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Stable angina pectoris	17,894 European ancestry cases, 325,132 European ancestry controls, 18,833 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	9p21.3		rs10757274-G	NR	2E-81		0.1582	[0.14-0.17] unit increase	Affymetrix, Illumina [20456336] (imputed)	N
753	chr9	22096054	22096055	rs10757274	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (vasodilators used in cardiac diseases)	17,050 East Asian ancestry cases, 161,676 East Asian ancestry controls	NA	9p21.3		rs10757274-G	0.475754726	2E-33		0.14490914	[0.12-0.17] unit increase	Illumina [13429980] (imputed)	N
753	chr9	22096054	22096055	rs10757274	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (salicylic acid and derivatives)	41,461 East Asian ancestry cases, 137,265 East Asian ancestry controls	NA	9p21.3		rs10757274-G	0.475754726	1E-31		0.09866836	[0.082-0.115] unit increase	Illumina [13429980] (imputed)	N
753	chr9	22096054	22096055	rs10757274	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antithrombotic agents)	67,653 European ancestry cases, 85,986 European ancestry controls, 54,220 East Asian ancestry cases, 124,506 East Asian ancestry controls	NA	9p21.3		rs10757274-G	NR	1E-38		0.0666	[0.057-0.077] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
753	chr9	22096054	22096055	rs10757274	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antithrombotic agents)	54,220 East Asian ancestry cases, 124,506 East Asian ancestry controls	NA	9p21.3		rs10757274-G	0.475754726	4E-27		0.08508037	[0.07-0.101] unit increase	Illumina [13429980] (imputed)	N
753	chr9	22096054	22096055	rs10757274	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Angina pectoris	14,007 East Asian ancestry cases, 145,158 East Asian ancestry controls	NA	9p21.3		rs10757274-G	0.468396871	2E-31		0.1545258	[0.13-0.18] unit increase	Illumina [13426705] (imputed)	N
753	chr9	22096054	22096055	rs10757274	32469254	Matsunaga H	2020-05-29	Circ Genom Precis Med	Transethnic Meta-analysis of Genome-wide Association Studies Identifies Three New Loci and Characterizes Population-specific Differences for Coronary Artery Disease.	Coronary artery disease	15,302 Japanese ancestry cases, 36,140 Japanese ancestry controls	NA	9p21.3	CDKN2B-AS1	rs10757274-G	0.48	6E-27		1.22	[1.18-1.27]	Illumina [5932413] (imputed)	N
753	chr9	22096054	22096055	rs10757274	27899403	Jones GT	2016-11-29	Circ Res	Meta-Analysis of Genome-Wide Association Studies for Abdominal Aortic Aneurysm Identifies Four New Disease-Specific Risk Loci.	Abdominal aortic aneurysm	4,972 European ancestry cases, 99,858 European ancestry controls	2,482 European ancestry cases, 2,750 cases, 2,645 European ancestry controls, 5,263 controls	9p21.3	CDKN2B-AS1, ANRIL	rs10757274-A	0.462	2E-33		1.24	[1.20-1.29]	Affymetrix, Illumina [5363770] (imputed)	N
753	chr9	22096054	22096055	rs10757274	22751097	Lu X	2012-07-01	Nat Genet	Genome-wide association study in Han Chinese identifies four new susceptibility loci for coronary artery disease.	Coronary heart disease	1,515 Han Chinese ancestry cases, 5,019 Han Chinese ancestry controls	15,460 Han Chinese ancestry cases, 11,472 Han Chinese ancestry controls	9p21.3	CDKN2A/B	rs10757274-G	0.46	8E-45		1.37	[1.31-1.43]	Affymetrix [~ 2200000] (imputed)	N
753	chr9	22098573	22098574	rs4977574	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cerebral aneurysm	945 European ancestry cases, 472,738 European ancestry controls, 3,132 East Asian ancestry cases, 152,022 East Asian ancestry controls	NA	9p21.3		rs4977574-G	NR	1E-14		0.1765	[0.13-0.22] unit increase	Affymetrix, Illumina [25841674] (imputed)	N
753	chr9	22098573	22098574	rs4977574	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cerebral aneurysm	3,132 East Asian ancestry cases, 152,022 East Asian ancestry controls	NA	9p21.3		rs4977574-G	0.472671461	8E-12		0.17880818	[0.13-0.23] unit increase	Illumina [13426064] (imputed)	N
753	chr9	22098573	22098574	rs4977574	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Cerebral aneurysm	2,820 Japanese ancestry cases, 192,383 Japanese ancestry controls	NA	9p21.3		rs4977574-G	0.4735955	2E-10		1.1867352	[1.125979182-1.250769385]	Illumina [8919992] (imputed)	N
753	chr9	22098573	22098574	rs4977574	29263402	Han Y	2017-12-20	Sci Rep	Genome-wide association study identifies a missense variant at APOA5 for coronary artery disease in Multi-Ethnic Cohorts from Southeast Asia.	Coronary artery disease	1,778 Chinese ancestry cases, 391 Malay ancestry cases, 5,164 Chinese ancestry controls, 2,212 Malay ancestry controls	291 Asian Indian cases, 1,848 Asian Indian controls	9p21.3	CDKN2a, CDKN2B	rs4977574-G	0.48	1E-7		1.2	[1.12-1.29]	Illumina [at least 5827330] (imputed)	N
753	chr9	22098573	22098574	rs4977574	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	9p21.3	CDKN2B-AS1	rs4977574-A	0.519	9E-223		0.1788	[0.17-0.19] unit decrease	Affymetrix [at least 7947838] (imputed)	N
753	chr9	22098573	22098574	rs4977574	24916648	Hirokawa M	2014-06-11	Eur J Hum Genet	A genome-wide association study identifies PLCL2 and AP3D1-DOT1L-SF3A2 as new susceptibility loci for myocardial infarction in Japanese.	Myocardial infarction	1,666 Japanese ancestry cases, 3,198 Japanese ancestry controls	11,412 Japanese ancestry cases, 28,397 Japanese ancestry controls	9p21.3	intergenic	rs4977574-C	0.46	8E-6		1.22	[1.12-1.33]	Illumina [455781]	N
753	chr9	22098573	22098574	rs4977574	21378990	Schunkert H	2011-03-06	Nat Genet	Large-scale association analysis identifies 13 new susceptibility loci for coronary artery disease.	Coronary heart disease	22,233 European ancestry cases, 64,762 European ancestry controls	56,682 European ancestry cases and controls	9p21.3	CDKN2A, CDKN2B	rs4977574-G	0.46	1E-22		1.29	[1.23-1.36]	Affymetrix, Illumina [~ 2300000] (imputed)	N
753	chr9	22098573	22098574	rs4977574	21378988	Coronary Artery Disease (C4D) Genetics Consortium	2011-03-06	Nat Genet	A genome-wide association study in Europeans and South Asians identifies five new loci for coronary artery disease.	Coronary heart disease	8,424 European ancestry cases, 7,268 European ancestry controls, 6,996 South Asian ancestry cases, 7,794 South Asian ancestry controls	18,049 European ancestry cases, 16,357 European ancestry controls, 3,359 South Asian ancestry cases, 2,828 South Asian ancestry controls	9p21.3	intergenic	rs4977574-G	NR	2E-25		1.2	[1.16-1.25]	Illumina [574919]	N
753	chr9	22098573	22098574	rs4977574	21239051	Reilly MP	2011-01-14	Lancet	Identification of ADAMTS7 as a novel locus for coronary atherosclerosis and association of ABO with myocardial infarction in the presence of coronary atherosclerosis: two genome-wide association studies.	Coronary artery disease	1,808 European ancestry cases, 915 European ancestry controls	10,585 European ancestry cases, 6,468 European ancestry controls	9p21.3	ANRIL, CDKN2A, CDKN2B	rs4977574-G	0.53	5E-14		1.3	[1.22-1.39]	Affymetrix, Illumina [> 2400000] (imputed)	N
753	chr9	22098573	22098574	rs4977574	19198609	Kathiresan S	2009-02-08	Nat Genet	Genome-wide association of early-onset myocardial infarction with single nucleotide polymorphisms and copy number variants.	Myocardial infarction (early onset)	2,967 European ancestry cases, 3,075 European ancestry controls	9,746 European ancestry cases, 9,746 European ancestry controls	9p21.3	CDKN2A, CDKN2B	rs4977574-G	0.56	3E-44		1.29	[1.25-1.34]	Affymetrix [~ 2500000] (imputed)	N
753	chr9	22098618	22098619	rs2891168	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	20,917 European ancestry cases, 440,906 European ancestry controls, 14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	9p21.3		rs2891168-G	NR	2E-120		0.2022	[0.19-0.22] unit increase	Affymetrix, Illumina [25841367] (imputed)	N
753	chr9	22098618	22098619	rs2891168	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	9p21.3		rs2891168-G	0.467807863	7E-53		0.20450868	[0.18-0.23] unit increase	Illumina [13427135] (imputed)	N
753	chr9	22098618	22098619	rs2891168	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (vasodilators used in cardiac diseases)	5,546 European ancestry cases, 237,113 European ancestry controls, 17,050 East Asian ancestry cases, 161,676 East Asian ancestry controls	NA	9p21.3		rs2891168-G	NR	3E-48		0.1483	[0.13-0.17] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
753	chr9	22098618	22098619	rs2891168	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs for peptic ulcer and gastro-oesophageal reflux disease)	53,137 European ancestry cases, 79,230 European ancestry controls, 53,363 East Asian ancestry cases, 125,363 East Asian ancestry controls	NA	9p21.3		rs2891168-G	NR	3E-9		0.0315	[0.021-0.042] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
753	chr9	22098618	22098619	rs2891168	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls, 33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	9p21.3		rs2891168-G	NR	5E-29		0.0536	[0.044-0.063] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
753	chr9	22098618	22098619	rs2891168	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	9p21.3	CDKN2B-AS1	rs2891168-G	0.482997	2E-141		1.21	[1.19-1.23]	NR [8126035] (imputed)	N
753	chr9	22098618	22098619	rs2891168	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 2,680 cases, 380,970 European ancestry controls, 73,242 controls	NA	9p21.3	CDKN2B-AS1	rs2891168-G	0.483196	2E-68		1.21	[1.18-1.23]	NR [10903881] (imputed)	N
753	chr9	22098618	22098619	rs2891168	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	9p21.3	CDKN2B-AS1	rs2891168-?	NR	4E-295		0.177893	[0.17-0.19] unit increase	Illumina [4804024] (imputed)	N
753	chr9	22098618	22098619	rs2891168	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls	NA	9p21.3	CDKN2B-AS1	rs2891168-G	0.488953	4E-18		0.07148465	[0.055-0.088] unit increase	Affymetrix [7288503] (imputed)	N
753	chr9	22098618	22098619	rs2891168	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	9p21.3	CDKN2B-AS1	rs2891168-A	0.525	5E-204		0.189	[0.18-0.2] unit decrease	Affymetrix [7947838] (imputed)	N
753	chr9	22098618	22098619	rs2891168	28714975	Nelson CP	2017-07-17	Nat Genet	Association analyses based on false discovery rate implicate new loci for coronary artery disease.	Coronary artery disease (myocardial infarction, percutaneous transluminal coronary angioplasty, coronary artery bypass grafting, angina or chromic ischemic heart disease)	18,467 European and unknown ancestry cases, 45,264 European and unknown ancestry controls	57,347 European and unknown ancestry cases, 219,521 European and unknown ancestry controls	9p21.3	CDKN2B-AS1	rs2891168-G	0.487	1E-101		1.19	[1.17-1.21]	Affymetrix [9149595] (imputed)	N
753	chr9	22098618	22098619	rs2891168	26343387	Nikpay M	2015-09-07	Nat Genet	A comprehensive 1,000 Genomes-based genome-wide association meta-analysis of coronary artery disease.	Myocardial infarction	27,509 European ancestry cases, 130 African American cases, 278 Hispanic American cases, 10,257 South Asian ancestry cases, 288 Lebanese ancestry cases, 1,687 East Asian ancestry cases, 99,121 European ancestry controls, 2,778 African American controls, 3,337 Hispanic American controls, 12,899 South Asian ancestry controls, 466 Lebanese ancestry controls, 7,709 East Asian ancestry controls	NA	9p21.3	9p21	rs2891168-G	0.48	5E-75		1.21	[1.19-1.23]	Affymetrix, Illumina [8600000] (imputed)	N
753	chr9	22098618	22098619	rs2891168	26343387	Nikpay M	2015-09-07	Nat Genet	A comprehensive 1,000 Genomes-based genome-wide association meta-analysis of coronary artery disease.	Coronary artery disease	42,096 European ancestry cases, 361 African American cases, 758 Hispanic American cases, 12,658 South Asian ancestry cases, 1,802 Lebanese ancestry cases, 3,614 East Asian ancestry cases, 99,121 European ancestry controls, 2,778 African American controls, 3,337 Hispanic American controls, 12,899 South Asian ancestry controls, 466 Lebanese ancestry controls, 7,709 East Asian ancestry controls	NA	9p21.3	9p21	rs2891168-G	0.488668	2E-98		1.21	[1.19- 1.24]	Affymetrix, Illumina [8600000] (imputed)	N
753	chr9	22099567	22099568	rs1537371	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Angina pectoris	30,025 European ancestry cases, 440,906 European ancestry controls, 14,007 East Asian ancestry cases, 145,158 East Asian ancestry controls	NA	9p21.3		rs1537371-A	NR	5E-101		0.1696	[0.15-0.19] unit increase	Affymetrix, Illumina [25842036] (imputed)	N
753	chr9	22099567	22099568	rs1537371	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls	NA	9p21.3	CDKN2B-AS1	rs1537371-A	0.499383	3E-25		0.058189403	[0.047-0.069] unit increase	Affymetrix [7288503] (imputed)	N
753	chr9	22100175	22100176	rs1556516	31919418	Shah S	2020-01-09	Nat Commun	Genome-wide association and Mendelian randomisation analysis provide insights into the pathogenesis of heart failure.	Heart failure	47,309 European ancestry cases, 930,014 European ancestry controls	NA	9p21.3	CDKN2B-AS1	rs1556516-C	0.48	2E-15		1.06	[1.05-1.08]	Affymetrix, Illumina [8246881] (imputed)	N
753	chr9	22100175	22100176	rs1556516	30642433	Timmers PR	2019-01-15	Elife	Genomics of 1 million parent lifespans implicates novel pathways and common diseases and distinguishes survival chances.	Parental lifespan	at least 500,193 European ancestry offspring	NA	9p21.3	CDKN2B-AS1	rs1556516-G	0.5	7E-11		0.251	[0.18-0.33] years increase	NR [up to 9000000] (imputed)	N
753	chr9	22100175	22100176	rs1556516	29227965	Pilling LC	2017-12-01	Aging (Albany NY)	Human longevity: 25 genetic loci associated in 389,166 UK biobank participants.	Parental longevity (father's attained age)	415,311 British ancestry individuals	NA	9p21.3	CDKN2B-AS1	rs1556516-G	NR	1E-20				Affymetrix [11535925] (imputed)	N
753	chr9	22100175	22100176	rs1556516	29227965	Pilling LC	2017-12-01	Aging (Albany NY)	Human longevity: 25 genetic loci associated in 389,166 UK biobank participants.	Parental longevity (father's age at death)	317,652 British ancestry individuals	NA	9p21.3	CDKN2A, CDKN2B, ANRIL	rs1556516-G	0.503	7E-9		0.0153	[0.01-0.02] unit increase	Affymetrix [11535925] (imputed)	N
753	chr9	22100175	22100176	rs1556516	29227965	Pilling LC	2017-12-01	Aging (Albany NY)	Human longevity: 25 genetic loci associated in 389,166 UK biobank participants.	Parental longevity (combined parental attained age, Martingale residuals)	389,166 British ancestry individuals	NA	9p21.3	CDKN2B-AS1	rs1556516-G	0.502	5E-16		0.0181	[0.014-0.022] unit decrease	Affymetrix [11535925] (imputed)	N
753	chr9	22100175	22100176	rs1556516	29227965	Pilling LC	2017-12-01	Aging (Albany NY)	Human longevity: 25 genetic loci associated in 389,166 UK biobank participants.	Parental longevity (combined parental age at death)	208,118 British ancestry individuals	NA	9p21.3	CDKN2B-AS1	rs1556516-G	0.503198	2E-10		0.021	[0.015-0.027] unit increase	Affymetrix [11535925] (imputed)	N
753	chr9	22101701	22101702	rs6475608	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (beta blocking agents)	20,367 East Asian ancestry cases, 158,359 East Asian ancestry controls	NA	9p21.3		rs6475608-C	0.665620537	4E-10		0.07350926	[0.05-0.097] unit increase	Illumina [13134967] (imputed)	N
753	chr9	22102164	22102165	rs7859727	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Ischemic stroke	11,929 European ancestry cases, 472,192 European ancestry controls, 22,664 East Asian ancestry cases, 152,022 East Asian ancestry controls	NA	9p21.3		rs7859727-T	NR	5E-11		0.0569	[0.04-0.074] unit increase	Affymetrix, Illumina [25844498] (imputed)	N
753	chr9	22102164	22102165	rs7859727	32678081	Timmers PRHJ	2020-07-16	Nat Commun	Multivariate genomic scan implicates novel loci and haem metabolism in human ageing.	Aging traits (healthspan, parental lifespan or longevity) (multivariate analysis)	at least 837,415 European ancestry individuals	NA	9p21.3	CDKN2B-AS1	rs7859727-C	0.51	4E-18				NR [7320282]	N
753	chr9	22102164	22102165	rs7859727	30729179	Zenin A	2019-01-30	Commun Biol	Identification of 12 genetic loci associated with human healthspan.	Healthspan	300,447 British ancestry individuals	81,099 European ancestry individuals, 3,073 African ancestry individuals, 6,921 South Asian ancestry individuals, 1,422 Chinese ancestry individuals, 3,799 Caribbean individuals	9p21.3	NR	rs7859727-T	0.477912	3E-10		0.0307229	[0.021-0.04] unit increase	Affymetrix [11309218] (imputed)	N
753	chr9	22102164	22102165	rs7859727	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Stroke	40,585 European ancestry cases, 406,111 European ancestry controls, 17,369 East Asian ancestry cases, 28,195 East Asian ancestry controls, 2,437 South Asian ancestry cases, 6,707 South Asian ancestry controls, 5,541 African American cases, 15,154 African American controls, 365 Asian ancestry cases, 333 Asian ancestry controls, 865 Latin American cases, 692 Latin American controls	NA	9p21.3	Chr9p21	rs7859727-?	NR	4E-10				NR [~ 8000000] (imputed)	N
753	chr9	22102164	22102165	rs7859727	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Stroke	40,585 European ancestry cases, 406,111 European ancestry controls	NA	9p21.3	Chr9p21	rs7859727-?	NR	7E-8				NR [~ 8000000] (imputed)	N
753	chr9	22102164	22102165	rs7859727	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Ischemic stroke	34,217 European ancestry cases, 406,111 European ancestry controls, 17,369 East Asian ancestry cases, 28,195 East Asian ancestry controls, 2,437 South Asian ancestry cases, 6,707 South Asian ancestry controls, 5,541 African American cases, 15,146 African American controls, 222 Asian ancestry cases, 333 Asian ancestry controls, 555 Latin American cases, 692 Latin American controls	NA	9p21.3	Chr9p21	rs7859727-?	NR	1E-9				NR [~ 8000000] (imputed)	N
753	chr9	22102164	22102165	rs7859727	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Ischemic stroke	34,217 European ancestry cases, 406,111 European ancestry controls	NA	9p21.3	CDKN2B-AS1	rs7859727-?	NR	2E-7				NR [~ 8000000] (imputed)	N
753	chr9	22103182	22103183	rs1537372	34601942	van Zuydam NR	2021-10-04	Circ Genom Precis Med	Genome-Wide Association Study of Peripheral Artery Disease.	Peripheral artery disease	12,086 European ancestry cases, 449,548 European ancestry controls	31,307 cases, 211,753 controls, 3,164 East Asian ancestry cases, 20,134 East Asian ancestry controls	9p21.3		rs1537372-T	0.42	7E-41		1.12	[1.1-1.14]	Affymetrix, Illumina [NR] (imputed)	N
753	chr9	22103182	22103183	rs1537372	31285632	Klarin D	2019-07-08	Nat Med	Genome-wide association study of peripheral artery disease in the Million Veteran Program.	Peripheral artery disease	24,009 European ancestry cases, 150,983 European ancestry controls, 5,373 African ancestry cases, 42,485 African ancestry controls, 1,925 Hispanic cases, 18,285 Hispanic controls	5,117 European ancestry cases, 389,291 European ancestry controls	9p21.3	CDKN2B-AS1	rs1537372-T	0.4176	4E-39		1.12	[1.10-1.14]	Affymetrix [at least 20323458] (imputed)	N
753	chr9	22103182	22103183	rs1537372	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	9p21.3	NR	rs1537372-G	0.5612	1E-8		1.05	[1.03-1.07]	Affymetrix, Illumina [16900397] (imputed)	N
753	chr9	22103340	22103341	rs1537373	33199917	Bakker MK	2020-11-16	Nat Genet	Genome-wide association study of intracranial aneurysms identifies 17 risk loci and genetic overlap with clinical risk factors.	Intracranial aneurysm	7,495 European ancestry cases, 71,934 European ancestry controls	NA	9p21.3	NR	rs1537373-T	0.5144	3E-22		0.1864	[0.15-0.22] unit decrease	Affymetrix, Illumina [4471083] (imputed)	N
753	chr9	22103340	22103341	rs1537373	33199917	Bakker MK	2020-11-16	Nat Genet	Genome-wide association study of intracranial aneurysms identifies 17 risk loci and genetic overlap with clinical risk factors.	Intracranial aneurysm	7,495 European ancestry cases, 3,259 East Asian ancestry cases, 71,934 European ancestry controls, 234,948 East Asian ancestry controls	NA	9p21.3	NR	rs1537373-T	0.462	3E-29		0.18	[0.15-0.21] unit decrease	Affymetrix, Illumina [3527309] (imputed)	N
753	chr9	22103340	22103341	rs1537373	23394302	Pechlivanis S	2013-02-08	BMC Med Genet	Risk loci for coronary artery calcification replicated at 9p21 and 6q24 in the Heinz Nixdorf Recall Study.	Coronary artery calcification	2,158 Europen ancestry males, 2,171 European ancestry females	NA	9p21.3	CDKN2A/2B	rs1537373-G	0.47	7E-7	(males)	0.34	[0.21-0.47] unit increase	Illumina [up to 196725]	N
753	chr9	22103340	22103341	rs1537373	23394302	Pechlivanis S	2013-02-08	BMC Med Genet	Risk loci for coronary artery calcification replicated at 9p21 and 6q24 in the Heinz Nixdorf Recall Study.	Coronary artery calcification	2,158 Europen ancestry males, 2,171 European ancestry females	NA	9p21.3	CDKN2A/2B	rs1537373-G	0.47	4E-11		0.3	[0.21-0.39] unit increase	Illumina [up to 196725]	N
753	chr9	22103812	22103813	rs1333042	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (mother's age at death or mother's attained age)	up to 699,000 individuals	NA	9p21.3	NR	rs1333042-G		3E-7				Illumina [458525]	N
753	chr9	22103812	22103813	rs1333042	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (father's age at death)	309,383 European ancestry individuals	NA	9p21.3	ANRIL	rs1333042-A	0.49	7E-15		0.01979	[0.015-0.025] unit increase	Illumina [541614]	N
753	chr9	22103812	22103813	rs1333042	30104761	Zhou W	2018-08-13	Nat Genet	Efficiently controlling for case-control imbalance and sample relatedness in large-scale genetic association studies.	Coronary artery disease	31,355 European ancestry cases, 377,103 European ancestry controls	NA	9p21.3	CDKN2, BAAS1	rs1333042-G	0.496	2E-72				Affymetrix [28000000] (imputed)	N
753	chr9	22103812	22103813	rs1333042	29227965	Pilling LC	2017-12-01	Aging (Albany NY)	Human longevity: 25 genetic loci associated in 389,166 UK biobank participants.	Parental longevity (both parents in top 10%)	7,182 cases, 79,767 controls	NA	9p21.3	CDKN2A, CDKN2B, ANRIL	rs1333042-A	0.502	2E-8		0.0112	[0.0073-0.0151] unit increase	Affymetrix [11535925] (imputed)	N
753	chr9	22103812	22103813	rs1333042	23364394	Lee JY	2013-01-31	J Hum Genet	A genome-wide association study of a coronary artery disease risk variant.	Coronary heart disease	2,123 Korean ancestry cases, 3,591 Korean ancestry controls	3,052 Japanese ancestry cases, 4,976 Japanese ancestry controls	9p21.3	CDKN2A/2B	rs1333042-?	NR	1E-9		1.3	[1.19-1.41]	Affymetrix [521786]	N
753	chr9	22109522	22109523	rs188610000	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	93,063 East Asian ancestry individuals	NA	9p21.3		rs188610000-A	0.003158	4E-8		0.232867	[0.15-0.32] unit decrease	Illumina [13470073] (imputed)	N
753	chr9	22110130	22110131	rs1412834	31089142	Law PJ	2019-05-14	Nat Commun	Association analyses identify 31 new risk loci for colorectal cancer susceptibility.	Colorectal cancer	31,197 European ancestry cases, 61,770 European ancestry controls	NA	9p21.3	NR	rs1412834-T	0.5	4E-14		1.08	[1.06-1.11]	Affymetrix, Illumina [> 10000000] (imputed)	N
753	chr9	22114468	22114469	rs10733376	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 142,336 Japanese ancestry controls	NA	9p21.3	CDKN2B-AS1	rs10733376-?	NR	8E-10		0.0762233	[0.052-0.101] unit increase	Illumina [19707525] (imputed)	N
753	chr9	22114468	22114469	rs10733376	25256182	Foroud T	2014-09-25	Stroke	Genome-wide association study of intracranial aneurysm identifies a new association on chromosome 7.	Intracranial aneurysm	2,617 European ancestry cases, 2,548 European ancestry controls	1,516 European ancestry cases, 5,321 European ancestry controls	9p21.3	CDKN2BAS, ANRIL	rs10733376-?	NR	4E-12		1.34	[1.23-1.45]	Affymetrix [685281] (imputed)	N
753	chr9	22115104	22115105	rs10965235	20601957	Uno S	2010-07-04	Nat Genet	A genome-wide association study identifies genetic variants in the CDKN2BAS locus associated with endometriosis in Japanese.	Endometriosis	1,423 Japanese ancestry cases, 1,318 Japanese ancestry controls	484 Japanese ancestry cases, 3,974 Japanese ancestry controls	9p21.3	CDKN2BAS	rs10965235-C	0.802	6E-12		1.44	[1.30-1.59]	Illumina [460945]	N
753	chr9	22115285	22115286	rs944797	21971053	Takeuchi F	2011-10-05	Eur J Hum Genet	Genome-wide association study of coronary artery disease in the Japanese.	Coronary heart disease	806 Japanese ancestry cases, 1,337 Japanese ancestry controls	3,593 Japanese ancestry cases, 6,335 Japanese ancestry controls	9p21.3	CDKN2A, CDKN2B	rs944797-C	0.46	6E-16		1.25	[1.18-1.31]	Illumina [451382]	N
753	chr9	22115958	22115959	rs2383207	20622881	Gretarsdottir S	2010-07-11	Nat Genet	Genome-wide association study identifies a sequence variant within the DAB2IP gene conferring susceptibility to abdominal aortic aneurysm.	Abdominal aortic aneurysm	1,292 European ancestry cases, 30,503 European ancestry controls	3,267 European ancestry cases, 7,451 European ancestry controls	9p21.3	CKDN2B, CDKN2A	rs2383207-G	0.49	2E-8		1.27	[NR]	Illumina [293677]	N
753	chr9	22119194	22119195	rs1333045	31285632	Klarin D	2019-07-08	Nat Med	Genome-wide association study of peripheral artery disease in the Million Veteran Program.	Minimum ankle-brachial index	13,382 European ancestry individuals, 3,284 African ancestry individuals, 998 Hispanic individuals	NA	9p21.3	CDKN2B-AS1	rs1333045-T	0.468	8E-9		0.064	[0.042-0.086] unit increase	Affymetrix [at least 9211766] (imputed)	N
753	chr9	22119194	22119195	rs1333045	31201950	Lutz MW	2019-03-06	Neurobiol Aging	Analysis of pleiotropic genetic effects on cognitive impairment, systemic inflammation, and plasma lipids in the Health and Retirement Study.	Serum total cholesterol levels	6,545 European ancestry individuals	NA	9p21.3		rs1333045-C	0.49	3E-7		4.24	[2.61-5.86] unit increase	Illumina [19468843] (imputed)	N
753	chr9	22119194	22119195	rs1333045	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	9p21.3		rs1333045-?	NR	1E-9				NR [~ 8900000] (imputed)	N
753	chr9	22119194	22119195	rs1333045	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	9p21.3	CDKN2B-AS1	rs1333045-C	0.4894	3E-12		0.1728	[0.12-0.22] mmHg decrease	Affymetrix [NR] (imputed)	N
753	chr9	22119194	22119195	rs1333045	29227965	Pilling LC	2017-12-01	Aging (Albany NY)	Human longevity: 25 genetic loci associated in 389,166 UK biobank participants.	Parental longevity (mother's age at death)	246,941 British ancestry individuals	NA	9p21.3	CDKN2B-AS	rs1333045-T	0.484993	6E-6		0.0126	[0.0071-0.0181] unit increase	Affymetrix [11535925] (imputed)	N
753	chr9	22121348	22121349	rs10217586	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	9p21.3	CDKN2B-AS1	rs10217586-A	0.467959	1E-17		0.051771935	[0.04-0.064] unit decrease	Affymetrix [7288503] (imputed)	N
753	chr9	22121348	22121349	rs10217586	26621817	Cheng TH	2015-12-01	Sci Rep	Meta-analysis of genome-wide association studies identifies common susceptibility polymorphisms for colorectal and endometrial cancer near SH2B3 and TSHZ1.	Colorectal or endometrial cancer	5,725 European ancestry colorectal carcinoma cases, 2,212 European ancestry endometrial carcinoma cases, 13,396 European ancestry controls	4,330 European ancestry endometrial carcinoma cases, 26,849 European ancestry controls	9p21.3	CDKN2B-AS1	rs10217586-?	0.461	2E-6	(same direction)	1.0752687	[1.04-1.11]	Illumina [up to 6000000] (imputed)	N
753	chr9	22122059	22122059	rs35831924	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	9p21.3		rs35831924-AT	NR	1E-10		0.014	[0.0097-0.0183] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
753	chr9	22122059	22122059	rs35831924	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic heart failure	14,262 European ancestry cases, 471,898 European ancestry controls, 10,540 East Asian ancestry cases, 168,186 East Asian ancestry controls	NA	9p21.3		rs35831924-AT	NR	9E-9		0.1064	[0.07-0.143] unit increase	Affymetrix, Illumina [25844553] (imputed)	N
753	chr9	22124476	22124477	rs10757278	17478679	Helgadottir A	2007-05-03	Science	A common variant on chromosome 9p21 affects the risk of myocardial infarction.	Myocardial infarction	1,607 European ancestry cases, 6,728 European ancestry controls	2,980 European ancestry cases, 6,309 European ancestry controls	9p21.3	CDKN2A, CDKN2B	rs10757278-G	0.45	1E-20		1.28	[1.22-1.35]	Illumina [305953]	N
753	chr9	22124503	22124504	rs1333047	33888516	Zheng T	2021-04-22	Gut	Genome-wide analysis of 944 133 individuals provides insights into the etiology of haemorrhoidal disease.	Haemorrhoidal disease	218,920 European ancestry cases, 725,213 European ancestry controls	NA	9p21.3	CDKN2B	rs1333047-A	0.4999	8E-28		1.04	[1.04-1.05]	Affymetrix, Illumina [8494288] (imputed)	N
753	chr9	22124503	22124504	rs1333047	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (vasodilators used in cardiac diseases)	5,546 European ancestry cases, 237,113 European ancestry controls	NA	9p21.3	CDKN2B-AS1	rs1333047-T	0.492809	5E-18		0.16531968	[0.13-0.2] unit increase	Affymetrix [7288503] (imputed)	N
753	chr9	22124503	22124504	rs1333047	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Hypertension	22,566 Japanese ancestry cases, 28,226 Japanese ancestry controls	8,809 East Asian ancestry cases, 13,663 East Asian ancestry controls, 105,253 European ancestry individuals	9p21.3	CDKN2B-AS1, DMRTA1	rs1333047-A	0.3359	5E-8	(Japanese)	0.0811	[0.052-0.11] unit decrease	Illumina [6200000] (imputed)	N
753	chr9	22124503	22124504	rs1333047	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	9p21.3	CDKN2B, DMRTA1	rs1333047-A		2E-10		0.162	unit decrease	Affymetrix [at least 2696785] (imputed)	N
753	chr9	22124503	22124504	rs1333047	24262325	Dichgans M	2013-11-21	Stroke	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Large artery stroke	2,167 cases, 49,159 controls	NA	9p21.3	intergenic	rs1333047-T	NR	2E-7		1.2	[1.11-1.29]	Affymetrix, Illumina [~ 2400000] (imputed)	N
753	chr9	22124743	22124744	rs4977575	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Subarachnoid hemorrhage	1,693 European ancestry cases, 471,562 European ancestry controls, 1,203 East Asian ancestry cases, 152,022 East Asian ancestry controls	NA	9p21.3		rs4977575-G	NR	8E-13		0.1957	[0.14-0.25] unit increase	Affymetrix, Illumina [25841499] (imputed)	N
753	chr9	22124743	22124744	rs4977575	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aortic aneurysm	3,230 European ancestry cases, 475,964 European ancestry controls, 1,155 East Asian ancestry cases, 173,601 East Asian ancestry controls	NA	9p21.3		rs4977575-G	NR	6E-9		0.1301	[0.086-0.174] unit increase	Affymetrix, Illumina [25843950] (imputed)	N
753	chr9	22124743	22124744	rs4977575	34469433	Ashvetiya T	2021-09-01	PLoS One	Identification of novel genetic susceptibility loci for thoracic and abdominal aortic aneurysms via genome-wide association study using the UK Biobank Cohort.	Abdominal aortic aneurysm	1,363 European, Indian, Caribbean, African ancestry cases, 27,260  European, Indian, Caribbean, African ancestry controls	NA	9p21.3		rs4977575-?	NR	1E-7		0.811558		NR [NR] (imputed)	N
753	chr9	22124743	22124744	rs4977575	28714974	Klarin D	2017-07-17	Nat Genet	Genetic analysis in UK Biobank links insulin resistance and transendothelial migration pathways to coronary artery disease.	Coronary artery disease	4,831 European ancestry cases, 115,455 European ancestry controls	up to 60,801 European and unknown ancestry cases, up to 123,504 European and unknown ancestry controls	9p21.3	CDKN2B-AS1	rs4977575-G	0.49	5E-23		1.24	[1.19-1.29]	Affymetrix [9061845] (imputed)	N
753	chr9	22124743	22124744	rs4977575	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Pulse pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	9p21.3	MTAP	rs4977575-G	0.492703113	1E-7		0.1662	[0.1-0.23] unit increase	Affymetrix [~ 9800000] (imputed)	N
753	chr9	22125346	22125347	rs1333048	27790247	He L	2016-11-03	Front Genet	Pleiotropic Meta-Analyses of Longitudinal Studies Discover Novel Genetic Variants Associated with Age-Related Diseases.	Age-related diseases and mortality	9,618 European ancestry individuals	19,796 European ancestry individuals	9p21.3	NR	rs1333048-?	NR	1E-6				Affymetrix [NR]	N
753	chr9	22125502	22125503	rs1333049	33321069	van Zuydam NR	2020-08-13	Circ Genom Precis Med	Genetic Predisposition to Coronary Artery Disease in Type 2 Diabetes Mellitus.	Coronary artery disease in individuals without type 2 diabetes	13,381 European ancestry cases, 4,313 South Asian ancestry cases, 18,926 European ancestry controls, 5,764 South Asian ancestry controls	12,988 European ancestry cases, 93,252 European ancestry controls	9p21.3	NR	rs1333049-C	0.46	5E-18		0.89	[0.86-0.92]	Affymetrix, Illumina [at least 119674] (imputed)	N
753	chr9	22125502	22125503	rs1333049	33321069	van Zuydam NR	2020-08-13	Circ Genom Precis Med	Genetic Predisposition to Coronary Artery Disease in Type 2 Diabetes Mellitus.	Coronary artery disease	19,245 European ancestry cases, 8,463 South Asian ancestry cases, 30,581 European ancestry controls, 8,354 South Asian ancestry controls	16,704 European ancestry cases, 101,083 European ancestry controls	9p21.3	NR	rs1333049-C	0.46	3E-22		1.17	[1.14-1.20]	Affymetrix, Illumina [at least 119674] (imputed)	N
753	chr9	22125502	22125503	rs1333049	29472232	Li Y	2018-02-22	Arterioscler Thromb Vasc Biol	Genome-Wide Association and Functional Studies Identify SCML4 and THSD7A as Novel Susceptibility Genes for Coronary Artery Disease.	Coronary artery disease	280 Han Chinese ancestry cases, 350 Han Chinese ancestry controls	9,764 Han Chinese ancestry cases, 11,434 Han Chinese ancestry controls	9p21.3	CDKN2BAS	rs1333049-C	0.443	1E-25		1.25	[1.21-1.30]	Affymetrix [314806] (imputed)	N
753	chr9	22125502	22125503	rs1333049	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	9p21.3	CDKN2B-AS1	rs1333049-C	0.4847	2E-192		0.1879	[0.18-0.2] unit increase	NR [8041861] (imputed)	N
753	chr9	22125502	22125503	rs1333049	27790247	He L	2016-11-03	Front Genet	Pleiotropic Meta-Analyses of Longitudinal Studies Discover Novel Genetic Variants Associated with Age-Related Diseases.	Age-related diseases, mortality and associated endophenotypes	9,618 European ancestry individuals	19,796 European ancestry individuals	9p21.3	NR	rs1333049-?	NR	9E-8				Affymetrix [NR]	N
753	chr9	22125502	22125503	rs1333049	24262325	Dichgans M	2013-11-21	Stroke	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Coronary artery disease or large artery stroke	2,167 Large artery stroke cases, 22,233 Coronary artery disease cases, ~ 75,921 controls	NA	9p21.3	CDKN2BAS	rs1333049-C	NR	1E-59				Affymetrix, Illumina [up to 2500000] (imputed)	N
753	chr9	22125502	22125503	rs1333049	24262325	Dichgans M	2013-11-21	Stroke	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Coronary artery disease or ischemic stroke	12,389 Ischemic stroke cases, 22,233 Coronary artery disease cases, ~ 88,766 controls	NA	9p21.3	CDKN2BAS	rs1333049-?		1E-56				Affymetrix, Illumina [up to 2500000] (imputed)	N
753	chr9	22125502	22125503	rs1333049	24262325	Dichgans M	2013-11-21	Stroke	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Coronary artery disease	33,398 cases, 75,726 controls	NA	9p21.3	CDKN2BAS	rs1333049-C	NR	3E-56		1.24	[1.21-1.28]	Illumina [575000] (imputed)	N
753	chr9	22125502	22125503	rs1333049	22144573	O'Donnell CJ	2011-12-05	Circulation	Genome-wide association study for coronary artery calcification with follow-up in myocardial infarction.	Coronary artery calcification	9,961 European ancestry individuals	6,032 European ancestry individuals	9p21.3	CDKN2B	rs1333049-C	NR	3E-24		0.199	[0.16-0.24] % increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
753	chr9	22125502	22125503	rs1333049	21606135	Wild PS	2011-05-23	Circ Cardiovasc Genet	A genome-wide association study identifies LIPA as a susceptibility gene for coronary artery disease.	Coronary heart disease	2,078 European ancestry cases, 2,953 European ancestry controls	19,350 European ancestry cases, 35,408 European ancestry controls	9p21.3	intergenic	rs1333049-C	0.49	7E-58		1.27	[1.23-1.31]	Affymetrix [608247]	N
753	chr9	22125502	22125503	rs1333049	17634449	Samani NJ	2007-07-18	N Engl J Med	Genomewide association analysis of coronary artery disease.	Coronary heart disease	1,926 European ancestry cases, 2,938 European ancestry controls	875 European ancestry cases, 1,644 European ancestry controls	9p21.3	intergenic	rs1333049-C	0.47	3E-19		1.36	[1.27-1.46]	Affymetrix [377857]	N
753	chr9	22125502	22125503	rs1333049	17554300	Wellcome Trust Case Control Consortium	2007-06-07	Nature	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Coronary heart disease	1,926 European ancestry cases, 2,938 European ancestry controls	(see Samani 2007)	9p21.3	CDKN2A, CDKN2B	rs1333049-C	0.47	1E-13		1.47	[1.27-1.70]	Affymetrix [469557]	N
753	chr9	22128179	22128180	rs12379111	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Alanine levels	115,078 European ancestry individuals	NA	9p21.3		rs12379111-C	0.905186	9E-10		0.0433143	[0.029-0.057] unit increase	NR [11722792] (imputed)	N
753	chr9	22128708	22128709	rs12347779	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	9p21.3	NR	rs12347779-G	NR	6E-11		0.0348	[0.024-0.045] unit increase	Affymetrix [9000000] (imputed)	N
753	chr9	22129578	22129579	rs7020996	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	150,068 East Asian ancestry individuals	NA	9p21.3		rs7020996-T	0.428135	3E-8		0.0193314	[0.012-0.026] unit increase	Illumina [13478956] (imputed)	N
753	chr9	22129578	22129579	rs7020996	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	9p21.3	CDKN2B-AS1, DMRTA1	rs7020996-T	0.419	6E-18	(Japanese)	0.32	[0.31-0.33] unit increase	Illumina [6108953] (imputed)	N
753	chr9	22129578	22129579	rs7020996	18372903	Zeggini E	2008-03-30	Nat Genet	Meta-analysis of genome-wide association data and large-scale replication identifies additional susceptibility loci for type 2 diabetes.	Type 2 diabetes	4,549 European ancestry cases, 5,579 European ancestry controls	24,194 European ancestry cases, 55,598 European ancestry controls	9p21.3	CDKN2A, CDKN2B	rs7020996-C	NR	2E-7		1.26	[1.15-1.38]	Affymetrix, Illumina [2202892] (imputed)	N
753	chr9	22130064	22130065	rs10965243	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Hemoglobin A1c levels	42,790 Japanese ancestry individuals	NA	9p21.3	CDKN2B-AS1, DMRTA1	rs10965243-?	NR	1E-15		0.05944	[0.045-0.074] unit decrease novel	Illumina [6108953] (imputed)	N
753	chr9	22130514	22130515	rs10965245	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	9p21.3		rs10965245-A	NR	1E-19		0.0231	[0.018-0.028] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
753	chr9	22130514	22130515	rs10965245	31902109	Li D	2020-01-04	Genes Genomics	Progressive effects of single-nucleotide polymorphisms on 16 phenotypic traits based on longitudinal data.	Hematological and biochemical traits	up to 6,843 Korean ancestry individuals	NA	9p21.3	CDKN2B-AS1, DMRTA1	rs10965245-T	0.3938	7E-7	(fasting blood glucose)	0.01268	NR unit decrease	Affymetrix [305158]	N
753	chr9	22132075	22132076	rs2383208	28898252	Wheeler E	2017-09-12	PLoS Med	Impact of common genetic determinants of Hemoglobin A1c on type 2 diabetes risk and diagnosis in ancestrally diverse populations: A transethnic genome-wide meta-analysis.	Glycated hemoglobin levels	88,355 European ancestry individuals	NA	9p21.3	MTAP	rs2383208-A	0.7992	7E-12		0.0142	[0.01-0.018] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
753	chr9	22132075	22132076	rs2383208	26818947	Imamura M	2016-01-28	Nat Commun	Genome-wide association studies in the Japanese population identify seven novel loci for type 2 diabetes.	Type 2 diabetes	15,463 Japanese ancestry cases, 26,183 Japanese ancestry controls	20,490 East Asian ancestry cases, 22,922 East Asian ancestry controls, 38,947 European ancestry cases, 121,903 European ancestry controls, 10,587 South Asian ancestry cases, 14,378 South Asian ancestry controls, 3,848 Mexican/Latino cases, 4,366 Mexican/Latino controls	9p21.3	CDKN2A, CDKN2B	rs2383208-A	NR	5E-33	(Japanese)	1.22274	[1.18315-1.26366]	Illumina [7521072] (imputed)	N
753	chr9	22132075	22132076	rs2383208	23209189	Tabassum R	2012-12-03	Diabetes	Genome-wide association study for type 2 diabetes in Indians identifies a new susceptibility locus at 2q21.	Type 2 diabetes	1,101 Indo-European ancestry cases, 1,027 Indo-European ancestry controls	3,607 Indo-European ancestry cases, 2,924 Indo-European ancestry controls, 1,184 Dravidian ancestry cases, 1,061 Dravidian ancestry controls, 11,285 European ancestry cases, 11,285 European ancestry controls	9p21.3	CDKN2A	rs2383208-T	0.85	3E-6	(Indo-European South Asians)	1.23	[1.13-1.34]	Illumina [536420]	N
753	chr9	22132075	22132076	rs2383208	22961080	Li H	2012-09-06	Diabetes	A genome-wide association study identifies GRK5 and RASGRP1 as type 2 diabetes loci in Chinese Hans.	Type 2 diabetes	1,839 Han Chinese ancestry cases, 1,873 Han Chinese ancestry controls	15,979 East Asian ancestry cases, 19,360 East Asian ancestry controls, 794 Malay ancestry cases, 1,240 Malay ancestry controls, 159 Filipino ancestry cases, 1,624 Filipino ancestry controls	9p21.3	CDKN2B	rs2383208-A	0.558	3E-17		1.22	[1.17-1.28]	Illumina [2234194] (imputed)	N
753	chr9	22132075	22132076	rs2383208	19401414	Takeuchi F	2009-04-29	Diabetes	Confirmation of multiple risk Loci and genetic impacts by a genome-wide association study of type 2 diabetes in the Japanese population.	Type 2 diabetes	519 Japanese ancestry cases, 503 Japanese ancestry controls	5,110 Japanese ancestry cases, 6,867 Japanese ancestry controls	9p21.3	CDKN2A, CDKN2B	rs2383208-A	0.55	2E-29		1.34	[1.27-1.41]	Illumina [482625]	N
753	chr9	22132575	22132576	rs78432974	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	9p21.3	NR	rs78432974-T	NR	1E-23		0.0541	[0.044-0.065] unit decrease	Affymetrix [9000000] (imputed)	N
753	chr9	22132697	22132698	rs10965246	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	9p21.3		rs10965246-C	NR	1E-103		0.1803	[0.16-0.2] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
753	chr9	22132697	22132698	rs10965246	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	71,221 East Asian ancestry individuals	NA	9p21.3		rs10965246-C	0.430124	4E-19		0.0381378	[0.03-0.046] unit decrease	Illumina [13466143] (imputed)	N
753	chr9	22132697	22132698	rs10965246	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 29,0641 European ancestry controls	NA	9p21.3	CDKN2B-AS1	rs10965246-C	0.17563	7E-21		0.14340697	[0.11-0.17] unit decrease	Affymetrix [7288503] (imputed)	N
753	chr9	22132697	22132698	rs10965246	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Blood sugar levels	93,146 Japanese ancestry individuals	NA	9p21.3	CDKN2B-AS1, DMRTA1	rs10965246-?	NR	2E-16		0.04248	[0.032-0.053] unit decrease novel	Illumina [6108953] (imputed)	N
753	chr9	22132728	22132729	rs10965247	33500527	Park JM	2021-01-26	Sci Rep	Understanding the genetic architecture of the metabolically unhealthy normal weight and metabolically healthy obese phenotypes in a Korean population.	Metabolically unhealthy in normal weight	10,358 Korean ancestry cases, 23,466 Korean ancestry controls	NA	9p21.3	CDKN2B	rs10965247-G	0.44	1E-10		0.89	[0.86-0.92]	Affymetrix [7975321]	N
753	chr9	22132728	22132729	rs10965247	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	46,511 Asian ancestry cases, 169,776 Asian ancestry controls	NA	9p21.3	NR	rs10965247-G	0.4353	4E-89		0.1769	[0.16-0.19] unit decrease	Affymetrix, Illumina [1077427] (imputed)	N
753	chr9	22132728	22132729	rs10965247	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	9p21.3		rs10965247-G	0.444418668	3E-99		0.8382419	[0.824642358-0.85206566]	Illumina [8919992] (imputed)	N
753	chr9	22132728	22132729	rs10965247	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	9p21.3	CDKN2A, B	rs10965247-A	0.56	1E-87		1.19	1.17-1.21	Illumina [12557761] (imputed)	N
753	chr9	22132877	22132878	rs10965248	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	133,336 East Asian ancestry individuals	NA	9p21.3		rs10965248-C	0.433379	3E-17		0.0294244	[0.023-0.036] unit decrease	Illumina [13476509] (imputed)	N
753	chr9	22132877	22132878	rs10965248	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	9p21.3	CDKN2A, B	rs10965248-T	0.563	4E-164		1.2	[1.19-1.22]	Affymetrix, Illumina [11800000] (imputed)	N
753	chr9	22133283	22133284	rs10965250	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	9p21.3		rs10965250-A	NR	7E-17		0.0162	[0.012-0.02] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
753	chr9	22133283	22133284	rs10965250	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	9p21.3		rs10965250-A	0.445526203	9E-94		0.1896244	[0.17-0.21] unit decrease	Illumina [13429769] (imputed)	N
753	chr9	22133283	22133284	rs10965250	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	9p21.3		rs10965250-A	NR	8E-114		0.1644	[0.15-0.18] unit decrease	Affymetrix, Illumina [25845091] (imputed)	N
753	chr9	22133283	22133284	rs10965250	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	9p21.3		rs10965250-A	0.434374603	1E-86		0.19516999	[0.18-0.21] unit decrease	Illumina [13134967] (imputed)	N
753	chr9	22133283	22133284	rs10965250	32794382	Cho SB	2020-07-28	Diabetes Metab J	Exome Chip Analysis of 14,026 Koreans Reve-als Known and Newly Discovered Genetic Loci Associated with Type 2 Diabetes Mellitus.	Type 2 diabetes	14,026 Korean ancestry individuals	NA	9p21.3	intergenic	rs10965250-?	0.57	7E-7		1.1904762	[1.11-1.41]	Illumina [up to 242901]	N
753	chr9	22133283	22133284	rs10965250	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	9p21.3	CDKN2B-AS1	rs10965250-A	NR	4E-7		1.0634904	NR	Affymetrix, Illumina [8278136] (imputed)	N
753	chr9	22133283	22133284	rs10965250	22885922	Morris AP	2012-09-01	Nat Genet	Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes.	Type 2 diabetes	6,377 European ancestry male cases, 5,794 European ancestry female cases, 22,243 European ancestry male controls, 34,619 European ancestry female controls	12,938 European ancestry male cases, 8,553 European ancestry female cases, 904 Pakistani ancestry male cases, 274 Pakistani ancestry female cases, 30,273 European ancestry male controls, 25,374 European ancestry female controls, 2,088 Pakistani ancestry male controls, 384 Pakistani ancestry female controls	9p21.3	CDKN2A/B	rs10965250-G	NR	9E-15	(men)	1.17	[1.13-1.22]	Affymetrix, Illumina [up to 2500000] (imputed)	N
753	chr9	22133283	22133284	rs10965250	22885922	Morris AP	2012-09-01	Nat Genet	Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes.	Type 2 diabetes	6,377 European ancestry male cases, 5,794 European ancestry female cases, 22,243 European ancestry male controls, 34,619 European ancestry female controls	12,938 European ancestry male cases, 8,553 European ancestry female cases, 904 Pakistani ancestry male cases, 274 Pakistani ancestry female cases, 30,273 European ancestry male controls, 25,374 European ancestry female controls, 2,088 Pakistani ancestry male controls, 384 Pakistani ancestry female controls	9p21.3	CDKN2A/B	rs10965250-G	NR	6E-16	(female)	1.2	[1.15-1.26]	Affymetrix, Illumina [up to 2500000] (imputed)	N
753	chr9	22133283	22133284	rs10965250	20581827	Voight BF	2010-06-27	Nat Genet	Twelve type 2 diabetes susceptibility loci identified through large-scale association analysis.	Type 2 diabetes	8,130 European ancestry cases, 38,987 European ancestry controls	Up to 34,412 European ancestry cases, 59,925 European ancestry controls	9p21.3	CDKN2A, CDKN2B	rs10965250-G		1E-10		1.2	[1.13-1.27]	Affymetrix, Illumina [2426886] (imputed)	N
753	chr9	22133772	22133773	rs76011118	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	9p21.3	CDKN2A, CDKN2B	rs76011118-A	0.0341	1E-7		1.11	[1.07-1.15]	Affymetrix, Illumina [~ 27000000] (imputed)	N
753	chr9	22133983	22133984	rs10757282	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	9p21.3		rs10757282-C	NR	2E-7		0.956032	[0.940033331253759-0.972302941794305]	Illumina [8919992] (imputed)	N
753	chr9	22134067	22134068	rs10811660	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	9p21.3		rs10811660-A	0.433732	3E-20		0.0252363	[0.02-0.031] unit increase	Illumina [13479924] (imputed)	N
753	chr9	22134067	22134068	rs10811660	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	9p21.3		rs10811660-A	NR	6E-84		0.048	[0.043-0.053] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
753	chr9	22134067	22134068	rs10811660	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	9p21.3		rs10811660-A	NR	3E-36		0.03	[0.025-0.035] unit decrease	Affymetrix, Illumina [20535873] (imputed)	N
753	chr9	22134067	22134068	rs10811660	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	35,619 East Asian ancestry individuals	NA	9p21.3	CDKN2B-AS1	rs10811660-A	0.4338	6E-7		0.0204	[0.012-0.029] unit decrease	Affymetrix, Illumina [15438438] (imputed)	N
753	chr9	22134067	22134068	rs10811660	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	200,622 European ancestry individuals	NA	9p21.3	CDKN2B-AS1	rs10811660-A	0.1761	8E-25		0.0223	[0.018-0.027] unit decrease	Affymetrix, Illumina [34064007] (imputed)	N
753	chr9	22134067	22134068	rs10811660	33385400	Patrick MT	2020-12-29	J Invest Dermatol	Causal relationship and shared genetic loci between psoriasis and type 2 diabetes through trans-disease meta-analysis.	Psoriasis or type 2 diabetes (trans-disease meta-analysis)	11,024 European ancestry psoriasis cases, 74,124 European ancestry diabetes cases, 840,342 European ancestry controls	NA	9p21.3	NR	rs10811660-G	NR	1E-11		1.11	NR	NR [8016731] (imputed)	N
753	chr9	22134067	22134068	rs10811660	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Type 2 diabetes	approximately 459,000 European ancestry individuals	NA	9p21.3		rs10811660-?	NR	3E-31				NR [~ 8900000] (imputed)	N
753	chr9	22134067	22134068	rs10811660	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	9p21.3	CDKN2A, CDKN2B	rs10811660-G	0.8282	1E-115		1.27	[1.24-1.29]	Affymetrix, Illumina [~ 27000000] (imputed)	N
753	chr9	22134093	22134094	rs10811661	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	163,835 East Asian ancestry individuals	NA	9p21.3		rs10811661-C	0.433573	3E-25		0.0333561	[0.027-0.04] unit increase	Illumina [13479178] (imputed)	N
753	chr9	22134093	22134094	rs10811661	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	9p21.3	CDKN2B-AS1	rs10811661-T	0.8212	2E-14		0.0128	[0.0095-0.0161] unit increase	Affymetrix, Illumina [33811881] (imputed)	N
753	chr9	22134093	22134094	rs10811661	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting glucose	73,089 European ancestry women	NA	9p21.3	CDKN2B	rs10811661-T	0.802861	6E-10		0.024655	[0.017-0.032] unit increase	Affymetrix, Illumina [8700000] (imputed)	N
753	chr9	22134093	22134094	rs10811661	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting glucose	151,188 European ancestry individuals	NA	9p21.3	CDKN2B	rs10811661-T	0.802861	7E-15		0.021805	[0.016-0.027] unit increase	Affymetrix, Illumina [8700000] (imputed)	N
753	chr9	22134093	22134094	rs10811661	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	9p21.3	NR	rs10811661-C	0.1717	8E-112		0.1379	[0.13-0.15] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
753	chr9	22134093	22134094	rs10811661	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	9p21.3	NR	rs10811661-C	0.2442	1E-205		0.1471	[0.14-0.16] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
753	chr9	22134093	22134094	rs10811661	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	9p21.3	CDKN2B-AS1	rs10811661-C	0.173605396001198	4E-58		0.1569	[0.14-0.18] unit decrease	NR [5035015] (imputed)	N
753	chr9	22134093	22134094	rs10811661	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	9p21.3	CDKN2B-AS1, DMRTA1	rs10811661-C	0.16	5E-13		0.021	[0.015-0.027] unit increase	Illumina [6108953] (imputed)	N
753	chr9	22134093	22134094	rs10811661	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	9p21.3	CDKN2A/2B	rs10811661-C	0.168	2E-68		0.174	[0.15-0.19] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
753	chr9	22134093	22134094	rs10811661	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	9p21.3	CDKN2A/2B	rs10811661-C	0.168	1E-30	(EA)	0.1563	[0.13-0.18] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
753	chr9	22134093	22134094	rs10811661	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	9p21.3	CDKN2A/2B	rs10811661-C	0.1319	9E-11	(South Asian)	0.1831	[0.13-0.24] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
753	chr9	22134093	22134094	rs10811661	27189021	Cook JP	2016-05-18	Eur J Hum Genet	Multi-ethnic genome-wide association study identifies novel locus for type 2 diabetes susceptibility.	Type 2 diabetes	746 African American cases, 2,825 African American controls, 743 East Asian ancestry cases, 3,992 East Asian ancestry controls, 7,111 European ancestry cases, 49,688 European ancestry controls, 1,147 Latino cases, 5,352 Latino controls	12,171 European ancestry cases, 56,862 European ancestry controls	9p21.3	CDKN2A, CDKN2B	rs10811661-T	0.815	2E-10		1.14	[1.09-1.19]	NR [at least 8497425] (imputed)	N
753	chr9	22134093	22134094	rs10811661	26961502	Wood AR	2016-03-10	Diabetologia	Variants in the FTO and CDKAL1 loci have recessive effects on risk of obesity and type 2 diabetes, respectively.	Type 2 diabetes	4,040 British ancestry cases, 113,735 British ancestry controls	NA	9p21.3	CDKN2A, CDKN2B	rs10811661-T	NR	1E-9	(additive model)	1.214	[1.15-1.28]	NR [9288881] (imputed)	N
753	chr9	22134093	22134094	rs10811661	25631608	Wessel J	2015-01-29	Nat Commun	Low-frequency and rare exome chip variants associate with fasting glucose and type 2 diabetes susceptibility.	Fasting blood glucose	50,900 European ancestry non-diabetic individuals, 9,664 African American non-diabetic individuals	NA	9p21.3	CDKN2B	rs10811661-G	0.184824870776567	2E-7		0.020698218	[0.013-0.029] unit decrease	Illumina [197481]	N
753	chr9	22134093	22134094	rs10811661	25187374	Hwang JY	2014-09-03	Diabetes	Genome-wide association meta-analysis identifies novel variants associated with fasting plasma glucose in East Asians.	Fasting plasma glucose	24,740 East Asian ancestry individuals	21,345 East Asian ancestry individuals	9p21.3	CDKN2A, CDKN2B	rs10811661-?	NR	9E-12		0.062	[0.044-0.080] unit increase	Affymetrix, Illumina [up to 2315813] (imputed)	N
753	chr9	22134093	22134094	rs10811661	24509480	Mahajan A	2014-02-09	Nat Genet	Genome-wide trans-ancestry meta-analysis provides insight into the genetic architecture of type 2 diabetes susceptibility.	Type 2 diabetes	12,171 European ancestry cases, 56,862 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls	21,491 European ancestry cases, 55,647 European ancestry controls	9p21.3	CDKN2A, CDKN2B	rs10811661-T	0.82	1E-27		1.18	[1.13-1.24]	Affymetrix, Illumina [2500000] (imputed)	N
753	chr9	22134093	22134094	rs10811661	23945395	Hara K	2013-08-14	Hum Mol Genet	Genome-wide association study identifies three novel loci for type 2 diabetes.	Type 2 diabetes	5,976 Japanese ancestry cases, 20,829 Japanese ancestry controls	24,416 East Asian ancestry cases, 13,985 East Asian ancestry controls	9p21.3	CDKN2A, CDKN2B	rs10811661-T	0.55	1E-18		1.23	[1.18-1.29]	Illumina [6209637] (imputed)	N
753	chr9	22134093	22134094	rs10811661	22885922	Morris AP	2012-09-01	Nat Genet	Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes.	Type 2 diabetes	6,377 European ancestry male cases, 5,794 European ancestry female cases, 22,243 European ancestry male controls, 34,619 European ancestry female controls	12,938 European ancestry male cases, 8,553 European ancestry female cases, 904 Pakistani ancestry male cases, 274 Pakistani ancestry female cases, 30,273 European ancestry male controls, 25,374 European ancestry female controls, 2,088 Pakistani ancestry male controls, 384 Pakistani ancestry female controls	9p21.3	CDKN2A/B	rs10811661-T	0.824988872842347	4E-27		1.18	[1.15-1.22]	Affymetrix, Illumina [up to 2500000] (imputed)	N
753	chr9	22134093	22134094	rs10811661	22581228	Manning AK	2012-05-13	Nat Genet	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting blood glucose (BMI interaction)	Up to 58,074 European ancestry individuals	Up tp 38,422 European ancestry individuals	9p21.3	CDKN2B	rs10811661-T	0.8215	7E-6		6.0E-4	[-0.00111-0.00231] unit increase	Affymetrix, Illumina [~ 2400000] (imputed)	N
753	chr9	22134093	22134094	rs10811661	22581228	Manning AK	2012-05-13	Nat Genet	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting blood glucose	Up to 58,074 European ancestry individuals	Up tp 38,422 European ancestry individuals	9p21.3	CDKN2B	rs10811661-T	0.821	1E-6		0.0195	[0.012-0.027] unit increase	Affymetrix, Illumina [~ 2400000] (imputed)	N
753	chr9	22134093	22134094	rs10811661	19056611	Timpson NJ	2008-12-03	Diabetes	Adiposity-related heterogeneity in patterns of type 2 diabetes susceptibility observed in genome-wide association data.	Type 2 diabetes	958 European ancestry obese cases, 955 European ancestry non-obese cases, 2,938 European ancestry controls	Up to 3,757 European ancestry cases, up to 5,346 European ancestry controls	9p21.3	CDKN2B	rs10811661-?	NR	7E-7	(non-obese)	1.26	[1.15-1.38]	Affymetrix [393453]	N
753	chr9	22134093	22134094	rs10811661	17463249	Zeggini E	2007-04-26	Science	Replication of genome-wide association signals in UK samples reveals risk loci for type 2 diabetes.	Type 2 diabetes	1,924 European ancestry cases, 2,938 European ancestry controls	3,757 European ancestry cases, 5,346 European ancestry controls	9p21.3	CDKN2A, CDKN2B	rs10811661-T	0.83	5E-6		1.19	[1.11-1.28]	Affymetrix [393453]	N
753	chr9	22134093	22134094	rs10811661	17463248	Scott LJ	2007-04-26	Science	A genome-wide association study of type 2 diabetes in Finns detects multiple susceptibility variants.	Type 2 diabetes	1,161 European ancestry cases, 1,174 European ancestry controls	1,215 European ancestry cases, 1,258 European ancestry controls	9p21.3	CDKN2A, CDKN2B	rs10811661-T	0.85	8E-15	(DGI+FUSION+WTCCC)	1.2	[1.14-1.25]	Illumina [315635]	N
753	chr9	22134093	22134094	rs10811661	17463246	Saxena R	2007-04-26	Science	Genome-wide association analysis identifies loci for type 2 diabetes and triglyceride levels.	Type 2 diabetes	1,464 European ancestry cases, 1,467 European ancestry controls	5,065 European ancestry cases, 5,785 European ancestry controls, at least 18,129 cases and controls.	9p21.3	CDKN2A, CDKN2B	rs10811661-T	0.83	8E-15		1.2	[1.14-1.25]	Affymetrix [386731]	N
753	chr9	22134171	22134172	rs10757283	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	9p21.3	CDKN2A, CDKN2B	rs10757283-T	0.4298	2E-41		1.11	[1.09-1.13]	Affymetrix, Illumina [~ 27000000] (imputed)	N
753	chr9	22134252	22134253	rs10811662	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	9p21.3		rs10811662-?	NR	3E-8		0.006627	[0.0043-0.009] unit increase	NR [NR]	N
753	chr9	22134252	22134253	rs10811662	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 1 diabetes	6,447 European ancestry cases, 451,248 European ancestry controls, 1,219 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	9p21.3		rs10811662-A	NR	1E-10		0.1412	[0.098-0.184] unit decrease	Affymetrix, Illumina [25837106] (imputed)	N
753	chr9	22134252	22134253	rs10811662	33893285	Guindo-Martinez M	2021-04-23	Nat Commun	The impact of non-additive genetic associations on age-related complex diseases.	Type 2 diabetes	6,967 European ancestry cases, 49,670 European ancestry controls	NA	9p21.3		rs10811662-A	0.1757438	4E-8		0.87		Affymetrix [15533686] (imputed)	N
753	chr9	22134252	22134253	rs10811662	33842983	Chung RH	2021-04-12	Diabetologia	Multi-omics analysis identifies CpGs near G6PC2 mediating the effects of genetic variants on fasting glucose.	Fasting blood glucose	18,122 Han Chinese ancestry individuals	1,989 Han Chinese ancestry individuals	9p21.3	CDKN2B, AS1	rs10811662-A	0.41	5E-11		0.067	[0.047-0.087] unit decrease	Affymetrix [774398] (imputed)	N
753	chr9	22134252	22134253	rs10811662	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	9p21.3	RP11-145E5.5	rs10811662-G	0.826788	6E-9		0.0153267	[0.01-0.02] unit increase	Affymetrix [NR] (imputed)	N
753	chr9	22134252	22134253	rs10811662	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	9p21.3	NR	rs10811662-A	0.17345299999999997	1E-10		0.00712583	[0.005-0.0093] unit increase	Affymetrix [16582909] (imputed)	N
753	chr9	22134252	22134253	rs10811662	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	9p21.3	NR	rs10811662-A	0.17345299999999997	9E-6		0.00551402	[0.0031-0.0079] unit increase	Affymetrix [16582965] (imputed)	N
753	chr9	22134252	22134253	rs10811662	29358691	Bonas-Guarch S	2018-01-22	Nat Commun	Re-analysis of public genetic data reveals a rare X-chromosomal variant associated with type 2 diabetes.	Type 2 diabetes	up to 12,931 European ancestry cases, up to 57,196 European ancestry controls	NA	9p21.3	CDKN2A, CDKN2B	rs10811662-G	NR	1E-13		1.1729243		Affymetrix, Illumina [~ 13000000] (imputed)	N
753	chr9	22134650	22134651	rs7019778	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Tyrosine levels	114,913 European ancestry individuals	NA	9p21.3		rs7019778-A	0.575617	5E-9		0.0242807	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
753	chr9	22136488	22136489	rs1333051	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glucose levels	114,870 European ancestry individuals	NA	9p21.3		rs1333051-A	0.863576	3E-9		0.035358	[0.024-0.047] unit increase	NR [11722792] (imputed)	N
753	chr9	22136488	22136489	rs1333051	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	9p21.3	NR	rs1333051-T	NR	4E-47		0.0515	[0.044-0.059] unit decrease	Affymetrix [9000000] (imputed)	N
753	chr9	22136488	22136489	rs1333051	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	9p21.3	NR	rs1333051-T	NR	9E-13		0.0261	[0.019-0.033] unit decrease	Affymetrix [9000000] (imputed)	N
753	chr9	22136488	22136489	rs1333051	21573907	Parra EJ	2011-05-15	Diabetologia	Genome-wide association study of type 2 diabetes in a sample from Mexico City and a meta-analysis of a Mexican-American sample from Starr County, Texas.	Type 2 diabetes	1,804 Hispanic cases, 780 Hispanic controls	European ancestry individuals	9p21.3	CDKN2A, CDKN2B	rs1333051-A	NR	6E-10		1.22	[1.15-1.30]	Affymetrix [315658]	N
753	chr9	22137684	22137685	rs7018475	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	9p21.3	NR	rs7018475-G	NR	3E-23		0.0276	[0.022-0.033] unit increase	Affymetrix [9000000] (imputed)	N
753	chr9	22137684	22137685	rs7018475	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	9p21.3	NR	rs7018475-G	NR	4E-15		0.0223	[0.017-0.028] unit increase	Affymetrix [9000000] (imputed)	N
753	chr9	22137684	22137685	rs7018475	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 29,0641 European ancestry controls	NA	9p21.3	CDKN2B-AS1	rs7018475-G	0.257707	5E-14		0.10020067	[0.074-0.126] unit increase	Affymetrix [7288503] (imputed)	N
753	chr9	22137684	22137685	rs7018475	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Hemoglobin A1c levels	42,790 Japanese ancestry individuals	NA	9p21.3	NR	rs7018475-?	NR	1E-8		0.03976	[0.026-0.054] unit increase novel	Illumina [6108953] (imputed)	N
753	chr9	22137684	22137685	rs7018475	25524916	Palmer ND	2014-12-18	Diabetes	Genetic Variants Associated With Quantitative Glucose Homeostasis Traits Translate to Type 2 Diabetes in Mexican Americans: The GUARDIAN (Genetics Underlying Diabetes in Hispanics) Consortium.	Glucose homeostasis traits	up to 4,176 Mexican American individuals	NA	9p21.3	CDKN2B-AS1, DMRTA1	rs7018475-?		5E-6	(AIRg)	1.64	[0.97-2.31] unit decrease	Illumina [693128]	N
753	chr9	22137684	22137685	rs7018475	22293688	Huang J	2012-02-01	Eur J Hum Genet	1000 Genomes-based imputation identifies novel and refined associations for the Wellcome Trust Case Control Consortium phase 1 Data.	Type 2 diabetes	16,179 European ancestry individuals	NA	9p21.3	CDKN2B	rs7018475-?	NR	3E-8		1.35	[1.18-1.56]	NR [6233112] (imputed)	N
753	chr9	22138262	22138263	rs75138808	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9p21.3	NR	rs75138808-G	0.02091	2E-9	(PSMD14)	0.07965	NR unit decrease	Illumina [1671387] (imputed)	N
753	chr9	22139219	22139220	rs10811663	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glutamine levels	114,751 European ancestry individuals	NA	9p21.3		rs10811663-G	0.913533	2E-9		0.048147	[0.032-0.064] unit increase	NR [11722792] (imputed)	N
753	chr9	22141551	22141552	rs2065504	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	9p21.3	intergenic	rs2065504-T	0.5157	3E-9		0.02115352	[0.014-0.028] unit increase	Affymetrix [~ 2500000] (imputed)	N
753	chr9	22142755	22142756	rs12376511	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	9p21.3		rs12376511-T	0.839	5E-27				Affymetrix [10369434] (imputed)	N
753	chr9	22142755	22142756	rs12376511	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	9p21.3		rs12376511-T	0.839	1E-34				Affymetrix [10369434] (imputed)	N
753	chr9	22142755	22142756	rs12376511	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	9p21.3		rs12376511-T	0.839	8E-10				Affymetrix [10369434] (imputed)	N
753	chr9	22142755	22142756	rs12376511	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Spleen volume	32,860 European ancestry individuals	NA	9p21.3	CDKN2B	rs12376511-?	NR	9E-23		0.0922	NR L increase	Affymetrix [9390170] (imputed)	N
753	chr9	22142755	22142756	rs12376511	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	9p21.3	NR	rs12376511-C	0.161811	9E-10		0.018665534	[0.013-0.025] unit increase	Affymetrix [93095623] (imputed)	N
753	chr9	22142755	22142756	rs12376511	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	9p21.3		rs12376511-C	0.161602	6E-77		0.056549974	[0.051-0.063] unit decrease	Affymetrix [93095623] (imputed)	N
753	chr9	22142755	22142756	rs12376511	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	9p21.3		rs12376511-C	0.16161	2E-55		0.047765013	[0.042-0.054] unit decrease	Affymetrix [93095623] (imputed)	N
753	chr9	22142755	22142756	rs12376511	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	9p21.3		rs12376511-C	0.16188	5E-23		0.030034663	[0.024-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
753	chr9	22142755	22142756	rs12376511	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	9p21.3		rs12376511-C	0.161809	3E-9		0.017941339	[0.012-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
753	chr9	22142755	22142756	rs12376511	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	9p21.3	NR	rs12376511-C	0.164417	6E-43		0.034202	[0.029-0.039] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
753	chr9	22142755	22142756	rs12376511	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	9p21.3	NR	rs12376511-T	0.835973	5E-17		0.02138	[0.016-0.026] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
753	chr9	22142755	22142756	rs12376511	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9p21.3	NR	rs12376511-C	0.219676	8E-90				Affymetrix, Illumina [23467995] (imputed)	N
753	chr9	22142755	22142756	rs12376511	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	9p21.3	NR	rs12376511-C	0.163934	3E-82		0.048585	[0.044-0.054] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
753	chr9	22142755	22142756	rs12376511	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	9p21.3	NR	rs12376511-C	0.162947	1E-13		0.020682	[0.015-0.026] SD unit decrease	Affymetrix, Illumina [50036608] (imputed)	N
753	chr9	22142906	22142907	rs10811664	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	95,119 East Asian ancestry individuals	NA	9p21.3		rs10811664-A	0.57542	3E-17		0.0378567	[0.029-0.047] unit decrease	Illumina [13471440] (imputed)	N
753	chr9	22142906	22142907	rs10811664	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	9p21.3		rs10811664-A	NR	2E-56		0.0413	[0.036-0.046] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
753	chr9	22142906	22142907	rs10811664	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	9p21.3	intergenic	rs10811664-A	0.1565	2E-31		0.05871229	[0.049-0.069] unit decrease	Affymetrix [~ 2500000] (imputed)	N
753	chr9	22143569	22143570	rs10757287	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	154,355 East Asian ancestry individuals	NA	9p21.3		rs10757287-T	0.563993	1E-16		0.0286682	[0.022-0.035] unit decrease	Illumina [13479091] (imputed)	N
753	chr9	22143569	22143570	rs10757287	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	9p21.3		rs10757287-T	NR	1E-74		0.042	[0.037-0.047] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
753	chr9	22143569	22143570	rs10757287	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	9p21.3		rs10757287-T	0.563467	2E-29		0.0378936	[0.031-0.044] unit decrease	Illumina [13478928] (imputed)	N
753	chr9	22143569	22143570	rs10757287	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	9p21.3	NR	rs10757287-T	0.162029	2E-9		0.018207936	[0.012-0.024] unit increase	Affymetrix [93095623] (imputed)	N
753	chr9	22143569	22143570	rs10757287	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	9p21.3		rs10757287-T	0.162021	1E-19		0.027524779	[0.022-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
753	chr9	22143569	22143570	rs10757287	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	9p21.3		rs10757287-T	0.162032	1E-50		0.04613181	[0.04-0.052] unit decrease	Affymetrix [93095623] (imputed)	N
753	chr9	22143569	22143570	rs10757287	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9p21.3	NR	rs10757287-T	0.248405	6E-54				Affymetrix, Illumina [24649327] (imputed)	N
753	chr9	22143569	22143570	rs10757287	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	151,807 East Asian ancestry individuals	NA	9p21.3	NR	rs10757287-A	0.43432	6E-15		0.029174	[0.022-0.036] SD units increase	Affymetrix, Illumina [16710636] (imputed)	N
753	chr9	22143569	22143570	rs10757287	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9p21.3	NR	rs10757287-A	0.832266	1E-15				Affymetrix, Illumina [22063850] (imputed)	N
753	chr9	22143569	22143570	rs10757287	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9p21.3	NR	rs10757287-T	0.220852	4E-16				Affymetrix, Illumina [19905671] (imputed)	N
753	chr9	22143569	22143570	rs10757287	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Platelet count	108,208 Japanese ancestry individuals	NA	9p21.3	CDKN2B-AS1, DMRTA1	rs10757287-?	NR	8E-19		0.03822	[0.03-0.047] unit decrease novel	Illumina [6108953] (imputed)	N
753	chr9	22143569	22143570	rs10757287	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	9p21.3	intergenic	rs10757287-T	0.1642	4E-10		0.03012798	[0.021-0.04] unit increase	Affymetrix [~ 2500000] (imputed)	N
753	chr9	22145693	22145694	rs2065500	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	9p21.3	NR	rs2065500-G	NR	9E-11		0.0223	[0.016-0.029] unit decrease	Affymetrix [9000000] (imputed)	N
753	chr9	22145693	22145694	rs2065500	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	9p21.3	NR	rs2065500-G	NR	1E-14		0.0259	[0.019-0.033] unit decrease	Affymetrix [9000000] (imputed)	N
753	chr9	22145693	22145694	rs2065500	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	9p21.3	intergenic	rs2065500-G	0.1593	1E-10		0.03130231	[0.022-0.041] unit increase	Affymetrix [~ 2500000] (imputed)	N
753	chr9	22151138	22151139	rs6475611	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	9p21.3		rs6475611-A	NR	3E-34		0.0289	[0.024-0.034] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
753	chr9	22151138	22151139	rs6475611	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	9p21.3		rs6475611-A	NR	1E-61		0.0436	[0.039-0.049] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
753	chr9	22151138	22151139	rs6475611	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	9p21.3		rs6475611-G	0.84	3E-34				Affymetrix [10369434] (imputed)	N
753	chr9	22151138	22151139	rs6475611	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	9p21.3	NR	rs6475611-A	0.16071	5E-29		0.03379497	[0.028-0.04] unit decrease	Affymetrix [93095623] (imputed)	N
753	chr9	22151138	22151139	rs6475611	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	9p21.3		rs6475611-A	0.160778	5E-12		0.020952439	[0.015-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
753	chr9	22151138	22151139	rs6475611	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	9p21.3		rs6475611-A	0.160775	2E-24		0.030905621	[0.025-0.037] unit increase	Affymetrix [93095623] (imputed)	N
753	chr9	22151138	22151139	rs6475611	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	9p21.3		rs6475611-A	0.160753	3E-9		0.0197541	[0.014-0.026] unit increase	Affymetrix [93095623] (imputed)	N
753	chr9	22151138	22151139	rs6475611	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	9p21.3		rs6475611-A	0.160745	7E-18		0.026122224	[0.02-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
753	chr9	22151138	22151139	rs6475611	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	9p21.3		rs6475611-A	0.160745	3E-61		0.050001405	[0.044-0.056] unit decrease	Affymetrix [93095623] (imputed)	N
753	chr9	22151138	22151139	rs6475611	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9p21.3	NR	rs6475611-A	0.235751	8E-12				Affymetrix, Illumina [24246363] (imputed)	N
753	chr9	22151138	22151139	rs6475611	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	9p21.3		rs6475611-?	NR	2E-27				NR [~ 8900000] (imputed)	N
753	chr9	22151138	22151139	rs6475611	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	9p21.3		rs6475611-?	NR	9E-11				NR [~ 8900000] (imputed)	N
753	chr9	22151138	22151139	rs6475611	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	9p21.3	intergenic	rs6475611-A	0.1619	1E-36		0.06329283	[0.053-0.073] unit decrease	Affymetrix [~ 2500000] (imputed)	N
753	chr9	22151138	22151139	rs6475611	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	9p21.3	intergenic	rs6475611-A	0.1621	3E-21		0.04622898	[0.037-0.056] unit decrease	Affymetrix [~ 2500000] (imputed)	N
753	chr9	22151138	22151139	rs6475611	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	9p21.3	intergenic	rs6475611-A	0.1621	3E-25		0.05118395	[0.042-0.061] unit decrease	Affymetrix [~ 2500000] (imputed)	N
754	chr9	22151411	22151412	rs7047414	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	88,929 East Asian ancestry individuals	NA	9p21.3	NR	rs7047414-C	0.438153	5E-15		0.037799	[0.028-0.047] SD units increase	Affymetrix, Illumina [16289044] (imputed)	N
754	chr9	22153264	22153265	rs6475614	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	9p21.3	NR	rs6475614-C	NR	2E-13		0.0189	[0.014-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
754	chr9	22153334	22153335	rs11293094	34130359	Curtis SW	2021-06-15	Genet Epidemiol	FAT4 identified as a potential modifier of orofacial cleft laterality.	Left unilateral cleft lip	68 Asian ancestry cases, 78 European ancestry cases, 70 Hispanic cases, 1,626 controls	NA	9p21.3	NR	rs11293094-?		5E-6		1.9	[1.44-2.50]	Illumina [539473] (imputed)	N
754	chr9	22153662	22153663	rs10965258	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	9p21.3		rs10965258-G	0.073392	3E-15		0.033763397	[0.025-0.042] unit increase	Affymetrix [93095623] (imputed)	N
754	chr9	22155708	22155709	rs944802	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	9p21.3	intergenic	rs944802-T	0.1144	2E-11		0.03820392	[0.027-0.049] unit decrease	Affymetrix [~ 2500000] (imputed)	N
754	chr9	22157830	22157831	rs137893140	30130595	Dominguez-Cruz MG	2018-08-18	Gene	Pilot genome-wide association study identifying novel risk loci for type 2 diabetes in a Maya population.	Type 2 diabetes	45 Maya ancestry cases, 47 Maya ancestry controls	NA	9p21.3	CDKN2B-AS1, DMRTACPED11	rs137893140-?	0.8138	8E-7		10.526316		Affymetrix [757439]	N
754	chr9	22157907	22157908	rs1333052	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	9p21.3	CDKN2A, CDKN2B	rs1333052-A	0.6599	6E-7		1.03	[1.02-1.05]	Affymetrix, Illumina [~ 27000000] (imputed)	N
754	chr9	22158167	22158168	rs12238587	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9p21.3		rs12238587-?	NR	9E-16				NR [~ 8900000] (imputed)	N
754	chr9	22158442	22158443	rs398088169	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Endometriosis	4,511 European ancestry cases, 227,260 European ancestry controls, 1,786 East Asian ancestry cases, 80,975 East Asian ancestry controls	NA	9p21.3		rs398088169-C	NR	6E-10		0.1154	[0.079-0.152] unit increase	Affymetrix, Illumina [25734875] (imputed)	N
754	chr9	22160086	22160087	rs72658409	26732429	Wang Z	2016-01-04	Hum Mol Genet	Meta-analysis of genome-wide association studies identifies multiple lung cancer susceptibility loci in never-smoking Asian women.	Lung cancer	6,877 East Asian ancestry never smoker cases, 6,277 East Asian ancestry never smoker controls	5,878 East Asian ancestry never smoker cases, 7,046 East Asian ancestry never smoker controls	9p21.3	Intergenic	rs72658409-?	0.927	1E-10		1.2987013	[1.19-1.39]	Affymetrix, Illumina [7564751] (imputed)	N
754	chr9	22160086	22160087	rs72658409	26732429	Wang Z	2016-01-04	Hum Mol Genet	Meta-analysis of genome-wide association studies identifies multiple lung cancer susceptibility loci in never-smoking Asian women.	Adenocarcinoma	Up to 5,744 Chinese ancestry cases, up to 4,817 Chinese ancestry controls, up to 1,133 Japanese ancestry cases, up to 1,460 Japanese ancestry controls	Up to 4,647 Chinese ancestry cases, up to 4,099 Chinese ancestry controls, up to 1,231 Japanese ancestry cases, up to 2,947 Japanese ancestry controls	9p21.3	Intergenic	rs72658409-?	0.927	2E-9		1.2987013	[1.19-1.41]	Affymetrix, Illumina [7564751] (imputed)	N
754	chr9	22161211	22161212	rs7864275	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure in major depressive disorder-negative individuals	10,701 European ancestry cases, 39,677 European ancestry controls	NA	9p21.3	NR	rs7864275-T	0.416121	9E-6		1.127	[1.07-1.18]	Affymetrix [7791636] (imputed)	N
754	chr9	22162060	22162061	rs10965269	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	95,717 East Asian ancestry individuals	NA	9p21.3		rs10965269-G	0.560613	3E-17		0.0375368	[0.029-0.046] unit decrease	Illumina [13471431] (imputed)	N
754	chr9	22162793	22162794	rs7041895	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Monocyte count	62,076 Japanese ancestry individuals	NA	9p21.3	CDKN2B-AS1, DMRTA1	rs7041895-?	NR	4E-16		0.04809	[0.036-0.06] unit increase novel	Illumina [6108953] (imputed)	N
754	chr9	22162793	22162794	rs7041895	28333195	Uimari O	2017-04-01	Hum Reprod	Genome-wide genetic analyses highlight mitogen-activated protein kinase (MAPK) signaling in the pathogenesis of endometriosis.	Deep ovarian and/or rectovaginal disease with dense adhesions	1,364 European ancestry cases, 7,060 European ancestry controls.	NA	9p21.3	CDKN2BAS1	rs7041895-?	NR	1E-7		1.26	[1.16-1.37]	Illumina [NR] (imputed)	N
754	chr9	22164308	22164309	rs17694933	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	White blood cell count	107,964 Japanese ancestry individuals	NA	9p21.3	CDKN2B-AS1, DMRTA1	rs17694933-?	NR	2E-12		0.03116	[0.022-0.04] unit increase novel	Illumina [6108953] (imputed)	N
754	chr9	22165582	22165583	rs1333054	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Lymphocyte counts	62,076 Japanese ancestry individuals	NA	9p21.3	CDKN2B-AS1, DMRTA1	rs1333054-?	NR	5E-17		0.05241	[0.04-0.065] unit increase novel	Illumina [6108953] (imputed)	N
754	chr9	22166473	22166474	rs75059952	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	9p21.3		rs75059952-T	NR	3E-10		0.0101	[0.007-0.0132] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
754	chr9	22169699	22169700	rs1537377	28537267	Sapkota Y	2017-05-24	Nat Commun	Meta-analysis identifies five novel loci associated with endometriosis highlighting key genes involved in hormone metabolism.	Endometriosis	14,926 European ancestry cases, 189,715 European ancestry controls, 2,119 Japanese ancestry cases, 2,143 Japanese ancestry controls	NA	9p21.3	CDKN2B-AS1	rs1537377-C	0.4	2E-8	(EA)	1.08	1.05-1.11	Affymetrix, Illumina [up to 6979035] (imputed)	N
754	chr9	22169699	22169700	rs1537377	28537267	Sapkota Y	2017-05-24	Nat Commun	Meta-analysis identifies five novel loci associated with endometriosis highlighting key genes involved in hormone metabolism.	Endometriosis	14,926 European ancestry cases, 189,715 European ancestry controls, 2,119 Japanese ancestry cases, 2,143 Japanese ancestry controls	NA	9p21.3	CDKN2B-AS1	rs1537377-C	0.4	1E-10		1.09	1.06-1.12	Affymetrix, Illumina [up to 6979035] (imputed)	N
754	chr9	22169699	22169700	rs1537377	23104006	Nyholt DR	2012-10-28	Nat Genet	Genome-wide association meta-analysis identifies new endometriosis risk loci.	Endometriosis	3,181 European ancestry cases, 8,075 European ancestry controls, 1,423 Japanese ancestry cases, 1,318 Japanese ancestry controls	1,044 Japanese ancestry, 4,017 Japanese ancestry controls	9p21.3	CDKN2B-ASI, ARF, CDKN2A, CDKN2B	rs1537377-C	0.401	2E-9		1.15	[1.10-1.21]	Illumina [407632]	N
754	chr9	22172258	22172259	rs828582	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	145,648 East Asian ancestry individuals	NA	9p21.3	NR	rs828582-A	0.392781	4E-24		0.041066	[0.033-0.049] SD units increase	Affymetrix, Illumina [16710488] (imputed)	N
754	chr9	22173074	22173075	rs9987548	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	89,266 East Asian ancestry individuals	NA	9p21.3	NR	rs9987548-T	0.62469	7E-18		0.044723	[0.035-0.055] SD units decrease	Affymetrix, Illumina [16289068] (imputed)	N
754	chr9	22184996	22184997	rs2767409	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	9p21.3		rs2767409-G	0.604	3E-20				Affymetrix [10369434] (imputed)	N
754	chr9	22185251	22185252	rs861189	26242244	Ma Y	2015-08-05	Sci Rep	Association of chromosome 5q21.3 polymorphisms with the exploratory eye movement dysfunction in schizophrenia.	Exploratory eye movement dysfunction in schizophrenia (responsive search score)	128 Han Chinese ancestry cases	NA	9p21.3	NR	rs861189-?	NR	8E-6		5.954	[3.45-8.46] unit decrease	Illumina [498648]	N
754	chr9	22185251	22185252	rs861189	26242244	Ma Y	2015-08-05	Sci Rep	Association of chromosome 5q21.3 polymorphisms with the exploratory eye movement dysfunction in schizophrenia.	Exploratory eye movement dysfunction in schizophrenia (number of eye fixations)	128 Han Chinese ancestry cases	NA	9p21.3	NR	rs861189-?	NR	3E-6		17.16	[10.24-24.08] unit decrease	Illumina [498648]	N
754	chr9	22196862	22196863	rs1751449	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	9p21.3		rs1751449-G	0.435251	6E-14		0.017152678	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
754	chr9	22206986	22206987	rs1679013	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cataracts	39,519 European ancestry cases, 452,358 European ancestry controls, 38,194 East Asian ancestry cases, 140,532 East Asian ancestry controls	NA	9p21.3		rs1679013-T	NR	1E-17		0.0581	[0.045-0.071] unit increase	Affymetrix, Illumina [25845331] (imputed)	N
754	chr9	22206986	22206987	rs1679013	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	38,996 female cases, 283,185 female controls, 28,848 male cases, 234,414 male controls	211,030 female cases, 1,623,785 female controls, 136,179 male cases, 1,263,461 male controls	9p21.3	CDKN2B, DMRTA1	rs1679013-T	NR	6E-10	(male)	1.0339	[1.02-1.04]	Affymetrix [9869154] (imputed)	N
754	chr9	22206986	22206987	rs1679013	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	28,092 non-Hispanic White ancestry cases, 50,487 non-Hispanic White ancestry controls, 31,852 European ancestry cases, 428,084 European ancestry controls	NA	9p21.3	NR	rs1679013-T	NR	2E-19		1.069		Affymetrix [9869154] (imputed)	N
754	chr9	22206986	22206987	rs1679013	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	28,092 non-Hispanic White ancestry cases, 50,487 non-Hispanic White ancestry controls, 2,233 East Asian ancestry cases, 7,023 East Asian ancestry controls, 2,149 Hispanic/Latino cases, 6,620 Hispanic/Latino controls, 815 African American cases, 2,368 African American controls, 31,852 European ancestry cases, 428,084 European ancestry controls, 757 African ancestry cases, 7,897 African ancestry controls, 1,278 South Asian ancestry cases, 8,571 South Asian ancestry controls, 668 other admixed cases, 7,349 other admixed controls	313,278 European ancestry cases, 2,210,509 European ancestry controls, 7,715 African American cases, 120,390 African American controls, 3,934 East Asian ancestry cases, 104,766 East Asian ancestry controls, 21,408 Latino cases, 425,544 Latino controls, 874 South Asian ancestry cases, 26,037 South Asian ancestry controls	9p21.3	CDKN2B, DMRTA1	rs1679013-T	NR	1E-13		1.03	[1.02-1.04]	Affymetrix [9869154] (imputed)	N
754	chr9	22206986	22206987	rs1679013	31816047	Boutin TS	2019-12-09	Hum Mol Genet	Insights into the genetic basis of retinal detachment.	Cataracts (operation)	21,679 British ancestry cases, 387,283 British ancestry controls	NA	9p21.3	CDKN2B-AS1, DMRTA1	rs1679013-?	0.458	1E-14		1.0820918	[1.06-1.1]	Affymetrix [NR] (imputed)	N
754	chr9	22206986	22206987	rs1679013	28165464	Law PJ	2017-02-06	Nat Commun	Genome-wide association analysis implicates dysregulation of immunity genes in chronic lymphocytic leukaemia.	Chronic lymphocytic leukemia	4,478 European ancestry cases and 13,213 European ancestry controls.	1,722 European ancestry cases and 4,385 European ancestry controls.	9p21.3	CDKN2B-AS1	rs1679013-C	NR	2E-8		1.16	[1.1-1.22]	Affymetrix, Illumina [> 10000000] (imputed)	N
754	chr9	22206986	22206987	rs1679013	23770605	Berndt SI	2013-06-16	Nat Genet	Genome-wide association study identifies multiple risk loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	2,179 European ancestry cases, 6,221 European ancestry controls	1,709 European ancestry cases, 6,318 European ancestry controls	9p21.3	AS1, CDKN2B	rs1679013-C	0.52	1E-8		1.19	[1.12-1.27]	Illumina [549934]	N
754	chr9	22207036	22207037	rs1679014	30093612	O'Mara TA	2018-08-09	Nat Commun	Identification of nine new susceptibility loci for endometrial cancer.	Endometrial cancer (endometrioid histology)	8,758 European ancestry cases, 46,126 European ancestry controls	NA	9p21.3	CDKN2A, CDKN2B	rs1679014-T	0.06799599999999995	4E-6		1.17	[1.09-1.25]	Affymetrix, Illumina [~ 11700000] (imputed)	N
754	chr9	22207036	22207037	rs1679014	30093612	O'Mara TA	2018-08-09	Nat Commun	Identification of nine new susceptibility loci for endometrial cancer.	Endometrial cancer	12,906 European ancestry cases, 108,979 European ancestry controls	NA	9p21.3	CDKN2A, CDKN2B	rs1679014-T	0.07	6E-9		1.18	[1.12-1.25]	Affymetrix, Illumina [~ 11700000] (imputed)	N
755	chr9	22293803	22293804	rs10811685	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	9p21.3	NR	rs10811685-A	0.061	6E-6	(IFNalpha_STAT4_of_Monocytes)			Illumina [5084123] (imputed)	N
755	chr9	22301091	22301092	rs1575972	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	9p21.3		rs1575972-A	NR	2E-12		0.8833312	[0.853214567283996-0.914510896110015]	Illumina [8919992] (imputed)	N
755	chr9	22301091	22301092	rs1575972	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	9p21.3	DMRTA1, CDKN2A, CDKN2B	rs1575972-T	0.94	5E-13		1.15	1.11-1.19	Illumina [12557761] (imputed)	N
755	chr9	22301091	22301092	rs1575972	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	9p21.3	CDKN2A, CDKN2B	rs1575972-T	0.9671	3E-7		1.1	[1.06-1.14]	Affymetrix, Illumina [~ 27000000] (imputed)	N
755	chr9	22301091	22301092	rs1575972	26818947	Imamura M	2016-01-28	Nat Commun	Genome-wide association studies in the Japanese population identify seven novel loci for type 2 diabetes.	Type 2 diabetes	15,463 Japanese ancestry cases, 26,183 Japanese ancestry controls	20,490 East Asian ancestry cases, 22,922 East Asian ancestry controls, 38,947 European ancestry cases, 121,903 European ancestry controls, 10,587 South Asian ancestry cases, 14,378 South Asian ancestry controls, 3,848 Mexican/Latino cases, 4,366 Mexican/Latino controls	9p21.3	DMRTA1	rs1575972-T	NR	6E-15		1.15	[ 1.11 - 1.19 ]	Illumina [7521072] (imputed)	N
755	chr9	22301091	22301092	rs1575972	26818947	Imamura M	2016-01-28	Nat Commun	Genome-wide association studies in the Japanese population identify seven novel loci for type 2 diabetes.	Type 2 diabetes	15,463 Japanese ancestry cases, 26,183 Japanese ancestry controls	20,490 East Asian ancestry cases, 22,922 East Asian ancestry controls, 38,947 European ancestry cases, 121,903 European ancestry controls, 10,587 South Asian ancestry cases, 14,378 South Asian ancestry controls, 3,848 Mexican/Latino cases, 4,366 Mexican/Latino controls	9p21.3	DMRTA1	rs1575972-T	0.935	2E-9	(Japanese)	1.19	[1.13-1.26]	Illumina [7521072] (imputed)	N
755	chr9	22336995	22336996	rs1359742	26956414	Berndt SI	2016-03-09	Nat Commun	Meta-analysis of genome-wide association studies discovers multiple loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	3,100 European ancestry cases, 7,667 European ancestry controls	1,958 cases,  5,530 controls	9p21.3	DMRTA1, CDKN2B-AS1	rs1359742-G	0.499	7E-9		1.2048193	[1.12-1.28]	Affymetrix, Illumina [~ 8500000] (imputed)	N
755	chr9	22362103	22362104	rs961831	20691247	Verweij KJ	2010-08-04	Biol Psychol	A genome-wide association study of Cloninger's temperament scales: implications for the evolutionary genetics of personality.	Personality dimensions	5,117 European ancestry individuals from 2567 families	NA	9p21.3	intergenic	rs961831-G	0.09	7E-6	(Novelty Seeking)	0.17	[NR] unit decrease	Affymetrix, Illumina [1252387] (imputed)	N
755	chr9	22365968	22365968	rs570688891	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	9p21.3	NR	rs570688891-C	0.525528	2E-8		0.00466145	[0.003-0.0063] unit increase	Affymetrix [16582909] (imputed)	N
755	chr9	22373456	22373457	rs10738626	25865352	Schaarschmidt H	2015-04-10	J Allergy Clin Immunol	A genome-wide association study reveals 2 new susceptibility loci for atopic dermatitis.	Atopic dermatitis	870 European ancestry cases, 5,293 European ancestry controls	1,383  European ancestry cases, 1,728 European ancestry controls	9p21.3	DMRTA1	rs10738626-T	0.506	1E-8		1.23	[NR]	Affymetrix [1623390] (imputed)	N
755	chr9	22381408	22381409	rs34254072	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	9p21.3		rs34254072-T	0.12	1E-41		13.52	z score increase	Affymetrix [9061022] (imputed)	N
755	chr9	22381408	22381409	rs34254072	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	9p21.3		rs34254072-T	0.12	2E-31		11.65	z score increase	Affymetrix [9061022] (imputed)	N
755	chr9	22381408	22381409	rs34254072	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	9p21.3	NR	rs34254072-T	0.1184	1E-16				NR [9056863] (imputed)	N
755	chr9	22381408	22381409	rs34254072	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	9p21.3	NR	rs34254072-T	0.1184	1E-17				NR [9056863] (imputed)	N
755	chr9	22381408	22381409	rs34254072	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	9p21.3	CADPS	rs34254072-?		2E-12				NR [7428630] (imputed)	N
755	chr9	22381408	22381409	rs34254072	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	9p21.3	DMRTA1	rs34254072-?		5E-14				NR [7428630] (imputed)	N
755	chr9	22381408	22381409	rs34254072	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	9p21.3	NR	rs34254072-?	NR	3E-9	(left isthmus cingulate)			NR [9227495] (imputed)	N
756	chr9	22446296	22446297	rs693370	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	9p21.3		rs693370-A	0.12	6E-15		7.81	z score increase	Affymetrix [9061022] (imputed)	N
756	chr9	22446750	22446751	rs2671622	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 7)	19,670 European ancestry individuals	NA	9p21.3		rs2671622-?	NR	7E-11				NR [9705931] (imputed)	N
756	chr9	22484015	22484016	rs1999124	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	9p21.3	NR	rs1999124-?	NR	3E-15				Affymetrix [NR]	N
756	chr9	22488677	22488678	rs586716	24057671	Chimusa ER	2013-09-18	Hum Mol Genet	Genome-wide association study of ancestry-specific TB risk in the South African Coloured population.	Tuberculosis	642 South African coloured cases, 91 South African coloured controls	NA	9p21.3	DMRTA1	rs586716-G	0.846	8E-6		4.7619	[NR]	Affymetrix [up to 4467279] (imputed)	N
756	chr9	22526994	22526995	rs1032687	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	9p21.3		rs1032687-T	0.828	5E-8	(conditional-joint)	0.0102	[0.0065-0.0139] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
756	chr9	22540579	22540580	rs62572328	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	9p21.3		rs62572328-?	NR	8E-9				NR [~ 8900000] (imputed)	N
756	chr9	22542284	22542285	rs10811723	31235808	Shungin D	2019-06-24	Nat Commun	Genome-wide analysis of dental caries and periodontitis combining clinical and self-reported data.	Number of decayed, missing and filled tooth surfaces or use of dentures	14,976 European ancestry individuals with decayed, missing or filled tooth surface measurement, 11,816 Hispanic/Latino individuals with decayed, missing or filled tooth surface measurement, 77,714 European ancestry dentures cases, 383,317 European ancestry controls	NA	9p21.3	DMRTA1	rs10811723-A	0.3	3E-11		0.019	[0.013-0.025] unit decrease	Affymetrix, Illumina [~ 8900000] (imputed)	N
756	chr9	22542284	22542285	rs10811723	31235808	Shungin D	2019-06-24	Nat Commun	Genome-wide analysis of dental caries and periodontitis combining clinical and self-reported data.	Dentures	77,714 European ancestry cases, 383,317 European ancestry controls	NA	9p21.3	DMRTA1	rs10811723-A	0.3	2E-11		0.041	[0.029-0.053] unit decrease	Affymetrix [at least 8900000] (imputed)	N
757	chr9	22589170	22589171	rs1499555	30801121	O'Donnell S	2019-02-25	Inflamm Bowel Dis	The Unsolved Link of Genetic Markers and Crohn's Disease Progression: A North American Cohort Experience.	Crohn's disease (indolent vs progressive)	562 European ancestry individuals with indolent disease, 701 European ancestry individuals with progressive disease	NA	9p21.3	NR	rs1499555-A	0.436396	1E-6				Illumina [5378266] (imputed)	N
757	chr9	22607893	22607894	rs10965400	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	9p21.3	NA	rs10965400-T		3E-13		0.0137852	[0.01-0.017] unit decrease	Illumina [13288253] (imputed)	N
757	chr9	22609109	22609110	rs34864022	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	9p21.3	NR	rs34864022-?		1E-9		0.0263815	[0.018-0.035] unit decrease	Affymetrix [19400418] (imputed)	N
757	chr9	22609109	22609110	rs34864022	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Driving (hours per day)	408,815 European ancestry individuals	NA	9p21.3	NR	rs34864022-?		1E-6		0.0219251	[0.013-0.031] unit decrease	Affymetrix [19400418] (imputed)	N
757	chr9	22641632	22641633	rs1448792	28537267	Sapkota Y	2017-05-24	Nat Commun	Meta-analysis identifies five novel loci associated with endometriosis highlighting key genes involved in hormone metabolism.	Endometriosis	14,926 European ancestry cases, 189,715 European ancestry controls, 2,119 Japanese ancestry cases, 2,143 Japanese ancestry controls	NA	9p21.3	intergenic	rs1448792-G	0.741	2E-7		1.08	1.05-1.12	Affymetrix, Illumina [up to 6979035] (imputed)	N
757	chr9	22641632	22641633	rs1448792	28537267	Sapkota Y	2017-05-24	Nat Commun	Meta-analysis identifies five novel loci associated with endometriosis highlighting key genes involved in hormone metabolism.	Endometriosis	14,926 European ancestry cases, 189,715 European ancestry controls, 2,119 Japanese ancestry cases, 2,143 Japanese ancestry controls	NA	9p21.3	intergenic	rs1448792-G	0.741	1E-7	(EA)	1.09	1.05-1.12	Affymetrix, Illumina [up to 6979035] (imputed)	N
757	chr9	22667224	22667225	rs1020463	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference	1,254 whole genome sequenced European ancestry individuals, 3,074 whole genome sequenced individuals, 29,716 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 701 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,050 Mylopotamos (founder/genetic isolate) individuals, 883 Pomak (founder/genetic isolate) individuals	205,909 European ancestry individuals	9p21.3	LINC01239	rs1020463-T	0.9948	3E-6		0.3502	[0.2-0.5] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
757	chr9	22669165	22669166	rs2210865	30068317	Li X	2018-08-01	BMC Med Genet	Genome-wide association study of lung function and clinical implication in heavy smokers.	Post bronchodilator FEV1/FVC ratio in smoking	1,086 European ancestry COPD cases, 559 European ancestry controls	NA	9p21.3	DMRTA1	rs2210865-G		2E-6		0.02653	[NR] unit decrease	Illumina [635970]	N
757	chr9	22670714	22670715	rs613391	19197348	Lowe JK	2009-02-06	PLoS Genet	Genome-wide association studies in an isolated founder population from the Pacific Island of Kosrae.	Quantitative traits	2,906 Kosraen individuals	NA	9p21.3	intergenic	rs613391-G	0.49	5E-6	(WC)	0.2	[NR] inch increase	Affymetrix [408775]	N
758	chr9	22725623	22725624	rs687184	31194736	Tiensuu H	2019-06-13	PLoS Genet	Risk of spontaneous preterm birth and fetal growth associates with fetal SLIT2.	Moderate-to-late spontaneous preterm birth	75 Finnish ancestry infant cases, 419 Finnish ancestry infant controls	NA	9p21.3	LINC01239	rs687184-?	NR	2E-7		3.5714285		Illumina [6778521] (imputed)	N
758	chr9	22759395	22759396	rs9695226	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Schizophrenia (MTAG)	940,613 European ancestry individuals	NA			rs9695226-?	NR	6E-9				NR [2625067]	N
758	chr9	22759395	22759396	rs9695226	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Schizophrenia (MTAG)	at least 33,640 European ancestry cases, at least 43,456 European ancestry controls	NA		NR	rs9695226-A	0.667999999999999	1E-8		0.06615742	[0.043-0.089] unit decrease	NR [NR]	N
758	chr9	22759395	22759396	rs9695226	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA		FLJ35282	rs9695226-G	NR	9E-8		1.059322	[1.04-1.08]	Illumina [6627481] (imputed)	N
758	chr9	22759395	22759396	rs9695226	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA		FLJ35282	rs9695226-G	NR	7E-8	(EA)	1.0648494	[1.04-1.09]	Illumina [6627481] (imputed)	N
758	chr9	22759395	22759396	rs9695226	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls		intergenic	rs9695226-G	NR	2E-7		1.0582011	[1.04-1.08]	Affymetrix, Illumina [up to 5107227] (imputed)	N
758	chr9	22759395	22759396	rs9695226	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA		NR	rs9695226-G	NR	4E-7		1.0638298	[NR]	Illumina [7158791] (imputed)	N
758	chr9	22767163	22767164	rs505061	33169155	Bigdeli TB	2020-11-10	Schizophr Bull	Genome-Wide Association Studies of Schizophrenia and Bipolar Disorder in a Diverse Cohort of US Veterans.	Schizophrenia	44,794 European ancestry cases, 7,509 African American cases, 1,234 Latino cases, 112,777 European ancestry controls, 8,337 African American controls, 3,090 Latino controls	NA	9p21.3	ELAVL2	rs505061-A	NR	5E-9		1.05	[1.03-1.07]	Affymetrix [up to 49134253] (imputed)	N
758	chr9	22767163	22767164	rs505061	33169155	Bigdeli TB	2020-11-10	Schizophr Bull	Genome-Wide Association Studies of Schizophrenia and Bipolar Disorder in a Diverse Cohort of US Veterans.	Schizophrenia	37,759 European ancestry cases, 7,509 African American cases, 1,234 Latino cases, 22,778 East Asian ancestry cases, 91,590 European ancestry controls, 8,337 African American controls, 3,090 Latino controls, 35,362 East Asian ancestry controls	NA	9p21.3	ELAVL2	rs505061-A	NR	2E-9		1.05	[1.03-1.07]	Affymetrix [up to 49134253] (imputed)	N
758	chr9	22770885	22770886	rs10811771	19875103	Aberg K	2009-10-27	Biol Psychiatry	Genomewide association study of movement-related adverse antipsychotic effects.	Response to antipsychotic therapy (extrapyramidal side effects)	421 European ancestry schizophrenia cases, 214 African American schizophrenia cases, 103 schizophrenia cases	NA	9p21.3	intergenic	rs10811771-?	NR	8E-7	(SAS)			Affymetrix [492000]	N
758	chr9	22775511	22775512	rs10811772	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	9p21.3	CDKN2B	rs10811772-?	NR	2E-6	(TAG 52:1)	0.16379012	[0.097-0.231] unit decrease	Affymetrix [at least 2500000] (imputed)	N
758	chr9	22790484	22790485	rs7852363	28521775	Manichaikul A	2017-05-18	Respir Res	Genome-wide association study of subclinical interstitial lung disease in MESA.	Subclinical trait of interstitial lung disease (basilar peel-core ratio of high attentuation areas on CT scan)	2,434 European ancestry individuals, 2,470 African American individuals, 2,065 Hispanic individuals, 702 Chinese ancestry individuals	NA	9p21.3	FLJ35282	rs7852363-T	0.132	2E-9		0.028	[0.018-0.038] unit increase	Affymetrix [at least 897981] (imputed)	N
758	chr9	22792512	22792513	rs1823289	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	9p21.3	NA	rs1823289-?		1E-9				Affymetrix, Illumina [NR] (imputed)	N
758	chr9	22804477	22804478	rs7031401	30218097	Munz M	2018-09-14	Eur J Hum Genet	Meta-analysis of genome-wide association studies of aggressive and chronic periodontitis identifies two novel risk loci.	Periodontitis	4,102 European ancestry cases, 8,489 European ancestry controls	993 European ancestry cases, 1,419 European ancestry controls	9p21.3		rs7031401-G		6E-6		1.27	[1.15-1.42]	Affymetrix, Illumina [1722107] (imputed)	N
759	chr9	22819575	22819576	rs7849973	23453885	Smoller JW	2013-02-27	Lancet	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NA	9p21.3	intergenic	rs7849973-?	NR	8E-6	(5 degree of freedom test)	1.05	[1.02-1.08]	NR [1252901] (imputed)	N
759	chr9	22842201	22842202	rs12554707	22952603	Hart AB	2012-08-28	PLoS One	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 10 individuals	NA	9p21.3	intergenic	rs12554707-?	NR	2E-6	(SF5)			Affymetrix [5476100] (imputed)	N
759	chr9	22862534	22862535	rs4400476	34834492	Espuela-Ortiz A	2021-11-03	J Pers Med	Role of Sex on the Genetic Susceptibility to Childhood Asthma in Latinos and African Americans.	Childhood asthma	3,075 African ancestry, European ancestry, Native American ancestry females	NA	9p21.3		rs4400476-T	NR	2E-7		0.78	[0.6-1.0]	Affymetrix [6680224] (imputed)	N
759	chr9	22891577	22891578	rs73651385	28322283	Chibnik LB	2017-03-21	Mol Psychiatry	Susceptibility to neurofibrillary tangles: role of the PTPRD locus and limited pleiotropy with other neuropathologies.	Diffuse plaques	909 European ancestry individuals	369 individuals	9p21.3		rs73651385-G	0.98	6E-6	(EA)			Affymetrix, Illumina [NR] (imputed)	N
759	chr9	22906738	22906739	rs760063500	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Trunk fat mass	3,399 whole genome sequenced individuals, 12,838 European ancestry individuals	10,667 European ancestry individuals	9p21.3	AL391117.1	rs760063500-A	0.998	7E-6		1.148	[0.65-1.65] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
759	chr9	22934662	22934663	rs13286845	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	9p21.3	DMRTA1	rs13286845-A	0.244	4E-8		0.0076	[0.0049-0.0103] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
759	chr9	22934662	22934663	rs13286845	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	9p21.3	DMRTA1	rs13286845-A	0.2477	4E-9		0.013239581	[0.0088-0.0176] unit increase	Illumina [9339358] (imputed)	N
759	chr9	22934662	22934663	rs13286845	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	9p21.3		rs13286845-?	NR	4E-8				NR [~ 8900000] (imputed)	N
760	chr9	22942769	22942770	rs9886665	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	NA	9p21.3	DMRTA1	rs9886665-T	0.2671	3E-9		0.2048	[0.14-0.27] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
760	chr9	22953628	22953629	rs10965534	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 9, facial height related to vertical position of nasion)	2,187 European ancestry individuals	NA	9p21.3	NR	rs10965534-T	0.03118	2E-6		0.4161	[0.25-0.59] unit decrease	Illumina [10677593] (imputed)	N
760	chr9	22972836	22972837	rs7020651	25987507	Minica CC	2015-05-19	Behav Genet	Heritability, SNP- and Gene-Based Analyses of Cannabis Use Initiation and Age at Onset.	Cannabis use (initiation)	1,357 European ancestry users, 5,387 European ancestry never users	NA	9p21.3	NR	rs7020651-A	NR	8E-6		0.38	[0.22-0.54] unit increase	NR [5896100] (imputed)	N
760	chr9	22973406	22973407	rs10965545	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Tissue-type plasminogen activator levels	21,758 European ancestry individuals	9,173 individuals	9p21.3		rs10965545-A	0.057	2E-8		0.1156	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
760	chr9	22993161	22993162	rs75537281	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	9p21.3	NR	rs75537281-?	NR	4E-6		10667.331	NR unit decrease	Illumina [2379855]	N
760	chr9	23028335	23028336	rs7019112	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Monocyte chemoattractant protein-1 levels	8,293 Finnish ancestry individuals	NA	9p21.3	NR	rs7019112-G		7E-6		0.2126	[0.12-0.3] SD units increase	NR [10700000] (imputed)	N
760	chr9	23032466	23032467	rs146161311	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	9p21.3	NR	rs146161311-?	NR	4E-8				Illumina [7760689] (imputed)	N
760	chr9	23035986	23035987	rs12375901	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	9p21.3	NR	rs12375901-?	NR	2E-7		0.5435	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
760	chr9	23053131	23053132	rs79030472	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	9p21.3	Intergenic	rs79030472-A	0.99	4E-7	(AA)	0.109	unit increase	Illumina [NR] (imputed)	N
761	chr9	23074738	23074739	rs189988997	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	9p21.3	NR	rs189988997-?	NR	1E-8				Illumina [7760689] (imputed)	N
761	chr9	23166742	23166743	rs7871386	30552108	Kawabata Y	2018-12-14	Diabetes	A genome-Wide Association Study Confirming a Strong Effect of HLA and Identifying Variants in CSAD/lnc-ITGB7-1 on Chromosome 12q13.13 Associated with Susceptibility to Fulminant Type 1 Diabetes.	Fulminant type 1 diabetes	257 Japanese ancestry cases, 419 Japanese ancestry controls	NA	9p21.3	ELAVL2	rs7871386-C	NR	5E-6		2.54	[1.69-3.83]	Affymetrix [426851] (imputed)	N
762	chr9	23227371	23227372	rs1339139	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	9p21.3	NR	rs1339139-?	NR	3E-11				Affymetrix [~ 8270000] (imputed)	N
762	chr9	23228274	23228275	rs1934102	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	9p21.3		rs1934102-?	NR	3E-11				NR [~ 8900000] (imputed)	N
762	chr9	23233666	23233667	rs73457936	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	9p21.3	Intergenic	rs73457936-A	0.921	7E-9	(MTAG)	0.0177	[0.012-0.024] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
762	chr9	23233666	23233667	rs73457936	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	9p21.3		rs73457936-A	0.9151	1E-8		0.0144	[0.0095-0.0193] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
762	chr9	23233666	23233667	rs73457936	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	9p21.3	Intergenic	rs73457936-A	0.9151	8E-11	(MTAG)	0.0153	[0.011-0.02] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
762	chr9	23234307	23234308	rs1934100	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically inactive individuals	561 African American women, 352 Filipino ancestry women, 725 Indian ancestry women, 19,366 European ancestry women, 251 African American men, 4,654 Indian ancestry men, 11,727 European ancestry men, 959 European ancestry individuals	1,437 African American women, 5,184 European ancestry women, 64 African American men, 5,416 European ancestry men	9p21.3	ELAVL2	rs1934100-A	0.6856	1E-7	(EA, men)	0.0867	[0.055-0.119] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
762	chr9	23234307	23234308	rs1934100	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	9p21.3	ELAVL2	rs1934100-?	NR	4E-8	(EA, men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
762	chr9	23234307	23234308	rs1934100	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	9p21.3	ELAVL2	rs1934100-A	0.6838	3E-7	(EA, men)	0.0377	[0.023-0.052] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
762	chr9	23263039	23263040	rs77850702	31779001	Franck M	2019-11-28	Lifestyle Genom	Prevention of Potential Adverse Metabolic Effects of a Supplementation with Omega-3 Fatty Acids Using a Genetic Score Approach.	Impaired insulin sensitivity in response to n-3 PUFA supplementation	32 French Canadian ancestry cases, 106 French Canadian ancestry controls	NA	9p21.3	LOC101929563	rs77850702-G	0.09	1E-6		5.03	[2.52-10.04]	Illumina [2668805]	N
762	chr9	23275148	23275149	rs1934108	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on educational attainment (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	9p21.3		rs1934108-?	NR	1E-9				NR [NR]	N
762	chr9	23275148	23275149	rs1934108	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on average household income before tax (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	9p21.3		rs1934108-?	NR	2E-8				NR [NR]	N
762	chr9	23277587	23277588	rs72703546	31779001	Franck M	2019-11-28	Lifestyle Genom	Prevention of Potential Adverse Metabolic Effects of a Supplementation with Omega-3 Fatty Acids Using a Genetic Score Approach.	Impaired insulin sensitivity in response to n-3 PUFA supplementation	32 French Canadian ancestry cases, 106 French Canadian ancestry controls	NA	9p21.3	LOC101929563	rs72703546-C	0.08	6E-6		4.84	[2.33-10.05]	Illumina [2668805]	N
762	chr9	23291525	23291526	rs10811883	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	9p21.3	NR	rs10811883-T	NR	2E-11		6.713	z score decrease	Affymetrix [10847151] (imputed)	N
762	chr9	23291525	23291526	rs10811883	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	9p21.3	ELAVL2	rs10811883-T	0.373745	9E-13		7.14	z score decrease	NR [10847151] (imputed)	N
762	chr9	23293755	23293756	rs4977846	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	9p21.3	intergenic	rs4977846-T	0.60678	2E-9		6.004	z score decrease	Illumina [18485882] (imputed)	N
762	chr9	23294688	23294689	rs10757410	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	9p21.3	NR	rs10757410-C	0.624900093925311	2E-9		0.011792741	[0.0079-0.0157] unit decrease	NR [NR]	N
762	chr9	23295898	23295899	rs4977844	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Neuroticism	274,107 British ancestry individuals	NA	9p21.3	NR	rs4977844-C	0.3598	4E-9		0.01136	[0.0076-0.0152] unit increase	NR [8968716] (imputed)	N
762	chr9	23295898	23295899	rs4977844	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	9p21.3	NR	rs4977844-G	0.62583	1E-9		0.034505	[0.023-0.046] unit decrease	Illumina [18485882] (imputed)	N
762	chr9	23295898	23295899	rs4977844	27067015	Smith DJ	2016-04-12	Mol Psychiatry	Genome-wide analysis of over 106 000 individuals identifies 9 neuroticism-associated loci.	Neuroticism	91,370 European ancestry individuals, 15,346 individuals	NA	9p21.3	ELAVL2	rs4977844-C	0.358	3E-8		0.083	[0.054-0.112] unit increase	Affymetrix [7207648] (imputed)	N
762	chr9	23297807	23297808	rs7047280	28100725	Chen J	2017-01-18	Neurology	Genome-wide association study identifies MAPT locus influencing human plasma tau levels.	Plasma t-tau levels	463 European ancestry Alzheimer's disease cases, 163 European ancestry individuals with mild cognitive impairment, 151 European ancestry individuals	360 individuals, 27 individuals later diagnosed with mild cognitive impairment	9p21.3	ELAVL2	rs7047280-?	0.404	8E-6	(European)			Illumina [316802]	N
762	chr9	23301611	23301612	rs10757411	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	9p21.3	SUMO2P2	rs10757411-T	NR	3E-9		0.010437	[0.007-0.0139] unit decrease	Affymetrix [18485882] (imputed)	N
762	chr9	23315439	23315440	rs1111818	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Neuroticism (MTAG)	168,105 European ancestry individuals	NA	9p21.3	NR	rs1111818-G	0.365	1E-8		0.0166	[0.011-0.022] unit increase	Illumina [NR] (imputed)	N
762	chr9	23316329	23316330	rs2150462	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	9p21.3	NR	rs2150462-C	0.7092	5E-6		0.025424	[0.014-0.036] unit decrease	Illumina [18485882] (imputed)	N
762	chr9	23316329	23316330	rs2150462	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Neuroticism	170,911 European ancestry individuals	NA	9p21.3	ELAVL2	rs2150462-C	0.74	3E-8		0.0216887	[0.014-0.029] unit decrease	Affymetrix [up to 6544775] (imputed)	N
762	chr9	23318432	23318433	rs10156548	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	9p21.3	NR	rs10156548-G	NR	3E-13		0.01776	[0.013-0.023] unit increase	Affymetrix [10847151] (imputed)	N
762	chr9	23318432	23318433	rs10156548	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling miserable	376,097 European ancestry individuals	NA	9p21.3	NR	rs10156548-C	0.37046	3E-10		6.3	z score decrease	NR [10847151] (imputed)	N
762	chr9	23325083	23325084	rs10811888	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9p21.3		rs10811888-?	NR	6E-10				NR [~ 8900000] (imputed)	N
763	chr9	23340615	23340616	rs1360379	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Experiencing mood swings	373,733 European ancestry individuals	NA	9p21.3	NR	rs1360379-T	0.395583	1E-9		6.07	z score decrease	NR [10847151] (imputed)	N
763	chr9	23341714	23341715	rs10965780	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	9p21.3		rs10965780-G	NR	2E-14		0.0133	[0.01-0.0166] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
763	chr9	23341714	23341715	rs10965780	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	9p21.3	NA	rs10965780-C	0.4098	9E-10		0.0107	[0.0074-0.014] unit decrease	NR [~ 27400000] (imputed)	N
763	chr9	23341714	23341715	rs10965780	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	9p21.3	NR	rs10965780-?	NR	2E-9		0.01412	[0.0095-0.0187] unit increase	Affymetrix [10847151] (imputed)	N
763	chr9	23341802	23341803	rs10965781	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	9p21.3	SUMO2P2	rs10965781-C	0.401	1E-10		0.013205554	[0.0092-0.0172] unit increase	Affymetrix [up to 18485882] (imputed)	N
763	chr9	23344736	23344737	rs10757416	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	9p21.3	SUMO2P2	rs10757416-T	0.2789	6E-12		0.015406016	[0.011-0.02] unit decrease	Affymetrix [up to 18485882] (imputed)	N
763	chr9	23344736	23344737	rs10757416	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	9p21.3	NR	rs10757416-T	NR	7E-10		6.157	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
763	chr9	23344736	23344737	rs10757416	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	9p21.3	SUMO2P2	rs10757416-T	NR	4E-10		0.021195631	[0.015-0.028] unit decrease	Affymetrix [NR]	N
763	chr9	23345346	23345347	rs11794152	29520040	Coleman JRI	2018-03-08	Mol Psychiatry	Biological annotation of genetic loci associated with intelligence in a meta-analysis of 87,740 individuals.	Extremely high intelligence	1,247 European ancestry cases, 86,493 European ancestry controls	NA	9p21.3	NR	rs11794152-A	0.589	5E-10		6.23	NR z score decrease decrease	Illumina [up to 12595966] (imputed)	N
763	chr9	23345346	23345347	rs11794152	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability	107,207 European ancestry individuals	NA	9p21.3	SUMO2P2	rs11794152-?	NR	3E-8		5.518	z score decrease	Affymetrix, Illumina [7357080] (imputed)	N
763	chr9	23345737	23345738	rs10156565	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	9p21.3	SUMO2P2	rs10156565-C	0.1898	1E-8		0.014778966	[0.0097-0.0199] unit decrease	Affymetrix [up to 18485882] (imputed)	N
763	chr9	23345906	23345907	rs10965787	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	9p21.3	NR	rs10965787-A	NR	6E-9		5.824	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
763	chr9	23346841	23346842	rs10429537	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	9p21.3	NR	rs10429537-?	NR	1E-8		0.01332	[0.0087-0.0179] unit decrease	Affymetrix [10847151] (imputed)	N
763	chr9	23346849	23346850	rs10429582	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	9p21.3	SUMO2P2	rs10429582-C	0.414	1E-27		0.022424942	[0.018-0.026] unit increase	Affymetrix [up to 18485882] (imputed)	N
763	chr9	23346849	23346850	rs10429582	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income	286,301 British ancestry individuals	NA	9p21.3	SUMO2P2	rs10429582-C	NR	2E-17		0.017125	[0.013-0.021] unit increase	Affymetrix [18485882] (imputed)	N
763	chr9	23347723	23347724	rs12555870	29559929	Amare AT	2018-03-06	Front Psychiatry	Association of the Polygenic Scores for Personality Traits and Response to Selective Serotonin Reuptake Inhibitors in Patients with Major Depressive Disorder.	Remission after SSRI treatment in MDD or neuroticism	865 individuals with SSRI response data, 170,911 individuals with personality trait data	NA	9p21.3	ELAVL2	rs12555870-G	NR	1E-8				NR [NR] (imputed)	N
763	chr9	23347852	23347853	rs10757417	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	9p21.3	SUMO2P2	rs10757417-?	NR	2E-12		0.014378082	[0.01-0.018] unit increase	NR [7306098]	N
763	chr9	23347852	23347853	rs10757417	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	9p21.3	SUMO2P2	rs10757417-A	NR	1E-11		0.020964367	[0.015-0.027] unit increase	Affymetrix [NR]	N
763	chr9	23347864	23347865	rs12553324	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	9p21.3	AL391117.1	rs12553324-C	0.5841	5E-13		0.0139	[0.01-0.018] unit decrease	Affymetrix [18391927] (imputed)	N
763	chr9	23347864	23347865	rs12553324	27329760	Hou L	2016-06-21	Hum Mol Genet	Genome-wide association study of 40,000 individuals identifies two novel loci associated with bipolar disorder.	Bipolar disorder	7,647 European ancestry cases, 27,303 European ancestry controls	2,137 European ancestry cases, 3,168 European ancestry controls	9p21.3	intergenic	rs12553324-C	0.59	6E-9		1.12	[1.07-1.16]	Affymetrix, Illumina [9692718] (imputed)	N
763	chr9	23347864	23347865	rs12553324	27046643	Davies G	2016-04-05	Mol Psychiatry	Genome-wide association study of cognitive functions and educational attainment in UK Biobank (N=112 151).	Educational attainment	111,114 European ancestry individuals	NA	9p21.3	Intergenic	rs12553324-?	NR	1E-13		0.0319647	[NR] unit increase	Affymetrix [~ 17300000] (imputed)	N
763	chr9	23349981	23349982	rs4557790	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	9p21.3	SUMO2P2	rs4557790-A	0.4412	9E-15		0.015777497	[0.012-0.02] unit increase	Affymetrix [up to 18485882] (imputed)	N
763	chr9	23349981	23349982	rs4557790	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income	286,301 British ancestry individuals	NA	9p21.3	SUMO2P2	rs4557790-A	NR	3E-9		0.01204	[0.0081-0.016] unit increase	Affymetrix [18485882] (imputed)	N
763	chr9	23349981	23349982	rs4557790	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	9p21.3	NR	rs4557790-A	NR	3E-9		5.934	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
763	chr9	23350419	23350420	rs34522021	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	9p21.3	NR	rs34522021-?	NR	3E-6		0.0946099	[0.055-0.134] unit increase	NR [13958389] (imputed)	N
763	chr9	23350419	23350420	rs34522021	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia	11,197 European ancestry low myopic cases, 21,416 European ancestry emmetropia controls	NA	9p21.3	NR	rs34522021-?	NR	2E-6		0.0794394	[0.047-0.112] unit increase	NR [13958389] (imputed)	N
763	chr9	23352292	23352293	rs12554512	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	9p21.3		rs12554512-C	0.475575	4E-8		0.0149482	[0.0096-0.0203] unit increase	Illumina [13479924] (imputed)	N
763	chr9	23352292	23352293	rs12554512	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	9p21.3	LOC101929563	rs12554512-T	0.583446	1E-9		0.0126436	[0.0085-0.0168] unit decrease	NR [16516521] (imputed)	N
763	chr9	23352292	23352293	rs12554512	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs bipolar disorder (ordinary least squares (OLS))	40,675 schizophrenia cases, 20,352 bipolar disorder cases	NA	9p21.3		rs12554512-?	NR	4E-8		0.013	NR unit decrease	NR [4548414] (imputed)	N
763	chr9	23352292	23352293	rs12554512	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	9p21.3	NR	rs12554512-?		4E-21		0.0207024	[0.016-0.025] unit increase	Affymetrix [19400418] (imputed)	N
763	chr9	23352292	23352293	rs12554512	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling lonely	376,352 European ancestry individuals	NA	9p21.3	NR	rs12554512-T	0.409986	5E-8		5.47	z score increase	NR [10847151] (imputed)	N
763	chr9	23354906	23354907	rs10965793	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	9p21.3	SUMO2P2	rs10965793-G	0.1663	2E-8		0.015050561	[0.0098-0.0203] unit decrease	Affymetrix [up to 18485882] (imputed)	N
763	chr9	23355309	23355310	rs4977839	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (computer use)	408,815 European ancestry individuals	NA	9p21.3	NR	rs4977839-?		5E-19		0.0199181	[0.016-0.024] unit decrease	Affymetrix [19400418] (imputed)	N
763	chr9	23356934	23356935	rs10811901	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	9p21.3		rs10811901-A	NR	3E-10		0.0127	[0.0088-0.0166] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
763	chr9	23356934	23356935	rs10811901	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	9p21.3	NR	rs10811901-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
763	chr9	23356934	23356935	rs10811901	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	9p21.3	LINC01239, LOC101929563	rs10811901-A	0.62	1E-8		0.015	[0.0091-0.0209] unit increase	Illumina [6108953] (imputed)	N
763	chr9	23357492	23357493	rs10965796	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	9p21.3	SUMO2P2	rs10965796-A	NR	3E-8		0.02240118	[0.014-0.03] unit increase	Affymetrix [NR]	N
763	chr9	23357825	23357826	rs7868984	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	9p21.3	NR	rs7868984-T	0.431412	8E-9		0.041086987	[0.027-0.055] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
763	chr9	23357825	23357826	rs7868984	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	9p21.3		rs7868984-?	NR	7E-31				NR [~ 8900000] (imputed)	N
763	chr9	23357825	23357826	rs7868984	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	9p21.3	Intergenic	rs7868984-T	0.5902	8E-50	(MTAG)	0.0249	[0.022-0.028] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
763	chr9	23357825	23357826	rs7868984	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	9p21.3	Intergenic	rs7868984-T	0.5902	7E-21		0.0216	[0.017-0.026] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
763	chr9	23357825	23357826	rs7868984	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	9p21.3		rs7868984-T	0.5885	4E-67	(conditional-joint)	0.0249	[0.022-0.028] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
763	chr9	23358080	23358081	rs7029201	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	9p21.3		rs7029201-A	0.4235	5E-22		105.95356	z score increase	NR [6814003]	N
763	chr9	23358080	23358081	rs7029201	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	9p21.3	NR	rs7029201-A	0.4113	7E-27		0.024696425	NR unit increase	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
763	chr9	23358494	23358495	rs7029718	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	9p21.3	NR	rs7029718-G	0.596	1E-12		0.0273	[0.02-0.035] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
763	chr9	23358494	23358495	rs7029718	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	9p21.3		rs7029718-A	0.4108	8E-65		0.0244	[0.022-0.027] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
763	chr9	23358494	23358495	rs7029718	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	9p21.3	Intergenic	rs7029718-A	0.4108	7E-76	(MTAG)	0.0247	[0.022-0.027] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
763	chr9	23358874	23358875	rs13294439	30804558	Grove J	2019-02-25	Nat Genet	Identification of common genetic risk variants for autism spectrum disorder.	Autism and educational attainment (MTAG)	18,381 European ancestry autism cases, 27,969 European ancestry controls, 328,917 individuals with educational attainment data	NA	9p21.3		rs13294439-A	0.596	3E-7		0.048	[0.03-0.066] unit decrease	Illumina [NR] (imputed)	N
763	chr9	23358874	23358875	rs13294439	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (college completion)	280,007 European ancestry individuals	NA	9p21.3	NR	rs13294439-?	0.4092	1E-14		1.048323	[NR]	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
763	chr9	23360416	23360417	rs1590949	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first birth	542,901 European ancestry individuals	NA	9p21.3	LOC101929563	rs1590949-C	0.5919	8E-10		0.0583	[0.04-0.077] unit decrease	NR [9744772] (imputed)	N
763	chr9	23362310	23362311	rs11793831	33563987	Tyrrell J	2021-02-09	Nat Commun	Genetic predictors of participation in optional components of UK Biobank.	Participation in an health questionnaire (not invited vs invited)	336,633 European ancestry cases, 114,464 European ancestry controls	NA	9p21.3	NR	rs11793831-G	0.583465	2E-9		1.005	[1.004, 1.007]	Affymetrix [39302896] (imputed)	N
763	chr9	23362310	23362311	rs11793831	33563987	Tyrrell J	2021-02-09	Nat Commun	Genetic predictors of participation in optional components of UK Biobank.	Acceptance of an invitation to participate in a mental health questionnaire	146,074 European ancestry cases, 148,713 European ancestry controls	NA	9p21.3	NR	rs11793831-G	0.58	9E-11		0.97	[0.96, 0.98]	Affymetrix [39302896] (imputed)	N
763	chr9	23362310	23362311	rs11793831	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	9p21.3	NR	rs11793831-G	0.432406	6E-20		0.058475845	[0.046-0.071] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
763	chr9	23362310	23362311	rs11793831	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Verbal-numerical reasoning	171,304 British ancestry individuals	NA	9p21.3		rs11793831-?	NR	3E-14				NR [7857346] (imputed)	N
763	chr9	23362310	23362311	rs11793831	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	9p21.3	NR	rs11793831-G	0.5949	4E-9		0.0274	[0.018-0.037] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
763	chr9	23362310	23362311	rs11793831	31263887	Adams MJ	2019-07-01	Int J Epidemiol	Factors associated with sharing e-mail information and mental health survey participation in large population cohorts.	Mental health study participation (completed survey)	122,647 British ancestry cases, 248,781 British ancestry controls	NA	9p21.3	SUMO2P2	rs11793831-T	0.42	4E-8		0.0059901	[0.0038-0.0081] unit increase	NR [16367095] (imputed)	N
763	chr9	23362310	23362311	rs11793831	30804566	Lane JM	2019-02-25	Nat Genet	Biological and clinical insights from genetics of insomnia symptoms.	Insomnia symptoms (never/rarely vs. usually)	129,270 European ancestry cases, 108,357 European ancestry controls	17,140 European ancestry cases, 61,850 European ancestry controls	9p21.3	FLJ35282/LOC402360	rs11793831-G	0.583428	2E-6		1.03	[1.02-1.04]	Affymetrix [14661600] (imputed)	N
763	chr9	23362310	23362311	rs11793831	30804566	Lane JM	2019-02-25	Nat Genet	Biological and clinical insights from genetics of insomnia symptoms.	Insomnia symptoms (never/rarely vs. sometimes/usually)	345,022 European ancestry cases, 108,357 European ancestry controls	17,140 European ancestry cases, 61,850 European ancestry controls	9p21.3	FLJ35282/LOC402360	rs11793831-G	0.583428	3E-8		1.03	[1.02-1.04]	Affymetrix [14661600] (imputed)	N
763	chr9	23362310	23362311	rs11793831	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	9p21.3	Intergenic	rs11793831-T	0.4049	3E-20	(MTAG)	0.0168	[0.013-0.02] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
763	chr9	23362310	23362311	rs11793831	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	9p21.3	Intergenic	rs11793831-T	0.4158	5E-41	(MTAG)	0.0312	[0.027-0.036] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
763	chr9	23362310	23362311	rs11793831	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	9p21.3	Intergenic	rs11793831-T	0.4158	2E-20		0.0269	[0.021-0.033] unit increase	Affymetrix, Illumina [10100000] (imputed)	N
763	chr9	23362310	23362311	rs11793831	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	9p21.3	NR	rs11793831-T	NR	3E-23		9.925	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
763	chr9	23362310	23362311	rs11793831	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	9p21.3	SUMO2P2	rs11793831-T	NR	4E-13		7.246	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
763	chr9	23362310	23362311	rs11793831	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	9p21.3	SUMO2P2	rs11793831-T	NR	9E-23		0.030613562	[0.025-0.037] unit increase	Affymetrix [NR]	N
763	chr9	23373326	23373327	rs76088721	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		AL391117.1	rs76088721-?	NR	3E-9	(female)	1.28691	[NR] unit decrease	Affymetrix [NR] (imputed)	N
763	chr9	23378219	23378220	rs10733389	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on self-rated math ability (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	9p21.3		rs10733389-?	NR	4E-11				NR [NR]	N
763	chr9	23378219	23378220	rs10733389	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on highest math class (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	9p21.3		rs10733389-?	NR	3E-11				NR [NR]	N
763	chr9	23378219	23378220	rs10733389	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on cognitive performance (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	9p21.3		rs10733389-?	NR	2E-11				NR [NR]	N
763	chr9	23378219	23378220	rs10733389	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on Townsend deprivation index (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	9p21.3		rs10733389-?	NR	3E-12				NR [NR]	N
763	chr9	23378219	23378220	rs10733389	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	9p21.3	SUMO2P2	rs10733389-G	0.3679	7E-14		0.015573757	[0.011-0.02] unit increase	Affymetrix [up to 18485882] (imputed)	N
763	chr9	23378219	23378220	rs10733389	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income	286,301 British ancestry individuals	NA	9p21.3	SUMO2P2	rs10733389-G	NR	2E-8		0.011293	[0.0073-0.0153] unit increase	Affymetrix [18485882] (imputed)	N
763	chr9	23378219	23378220	rs10733389	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	9p21.3	NR	rs10733389-A	NR	6E-16		8.091	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
763	chr9	23378219	23378220	rs10733389	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	9p21.3	SUMO2P2	rs10733389-A	NR	6E-9		5.819	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
763	chr9	23378219	23378220	rs10733389	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	9p21.3	SUMO2P2	rs10733389-A	NR	1E-13		0.023371456	[0.017-0.03] unit decrease	Affymetrix [NR]	N
763	chr9	23378219	23378220	rs10733389	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Neuroticism	170,911 European ancestry individuals	NA	9p21.3	NR	rs10733389-A	0.384	8E-8		0.018885223	[0.012-0.026] unit increase	Affymetrix [up to 6544775] (imputed)	N
763	chr9	23378487	23378488	rs1360380	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	9p21.3	NR	rs1360380-?	NR	2E-10		0.01503	[0.01-0.02] unit increase	Affymetrix [10847151] (imputed)	N
763	chr9	23379445	23379446	rs11999669	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	9p21.3	NR	rs11999669-A	NR	2E-8		5.633	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
763	chr9	23379718	23379719	rs1360382	25201988	Rietveld CA	2014-09-08	Proc Natl Acad Sci U S A	Common genetic variants associated with cognitive performance identified using the proxy-phenotype method.	Educational attainment	106,736 European ancestry individuals	NA	9p21.3	intergenic	rs1360382-A	0.042	3E-7		0.024	[NR] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
763	chr9	23382381	23382382	rs2094889	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	9p21.3	SUMO2P2	rs2094889-C	0.3179	4E-14		0.01646133	[0.012-0.021] unit increase	Affymetrix [up to 18485882] (imputed)	N
763	chr9	23382381	23382382	rs2094889	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income	286,301 British ancestry individuals	NA	9p21.3	SUMO2P2	rs2094889-C	NR	2E-9		0.012113	[0.0082-0.0161] unit increase	Affymetrix [18485882] (imputed)	N
763	chr9	23385737	23385738	rs117273411	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	9p21.3		rs117273411-T	0.954	9E-10		0.0211	[0.014-0.028] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
763	chr9	23387642	23387643	rs16907146	29251981	Weafer J	2017-12-01	Exp Clin Psychopharmacol	Hierarchical investigation of genetic influences on response inhibition in healthy young adults.	Inhibitory control	934 European ancestry individuals	NA	9p21.3	intergenic	rs16907146-C	0.075	9E-6				Illumina [4873750] (imputed)	N
763	chr9	23388154	23388155	rs1330158	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability (MTAG)	436,124 European ancestry individuals	NA	9p21.3	SUMO2P2	rs1330158-?	NR	7E-13		7.176	z score increase	Affymetrix, Illumina, Perlegen [7333576] (imputed)	N
763	chr9	23388154	23388155	rs1330158	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability	107,207 European ancestry individuals	NA	9p21.3	SUMO2P2	rs1330158-?	NR	7E-7		4.95	z score increase	Affymetrix, Illumina [7357080] (imputed)	N
763	chr9	23388569	23388570	rs17836155	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	9p21.3	NR	rs17836155-A	NR	2E-14		7.622	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
763	chr9	23388822	23388823	rs10965816	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	9p21.3	SUMO2P2	rs10965816-C	NR	1E-14		0.02568107	[0.019-0.032] unit increase	Affymetrix [NR]	N
763	chr9	23395049	23395050	rs10965828	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	9p21.3	SUMO2P2	rs10965828-C	NR	3E-12		0.021680092	[0.016-0.028] unit increase	Affymetrix [NR]	N
763	chr9	23402478	23402479	rs4526443	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	9p21.3	NR	rs4526443-T	NR	6E-14		7.517	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
763	chr9	23402639	23402640	rs4291350	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	9p21.3	SUMO2P2	rs4291350-T	NR	2E-10		0.018777292	[0.013-0.025] unit decrease	Affymetrix [NR]	N
763	chr9	23422483	23422484	rs4977858	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	9p21.3	SUMO2P2	rs4977858-A	NR	1E-8		0.017408177	[0.011-0.023] unit decrease	Affymetrix [NR]	N
763	chr9	23423784	23423785	rs13284516	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	9p21.3		rs13284516-C	0.5452	7E-9		0.0082	[0.0055-0.0109] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
763	chr9	23426270	23426271	rs12000445	22872573	Hu L	2012-08-07	Clin Cancer Res	Genome-wide association study of prognosis in advanced non-small cell lung cancer patients receiving platinum-based chemotherapy.	Response to platinum-based chemotherapy in non-small-cell lung cancer	528 Han Chinese ancestry cases	340 Han Chinese ancestry cases, 409 European ancestry cases	9p21.3	HuB	rs12000445-A	NR	7E-6	(Han Chinese)	1.49	[1.25-1.75]	NR [576351]	N
763	chr9	23455763	23455764	rs145503185	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Rectal cancer	2,091 European ancestry cases, 410,350 European ancestry controls	NA	9p21.3		rs145503185-C	0.01279	4E-8		1.8050541	NR	Affymetrix [7846216] (imputed)	N
764	chr9	23479587	23479588	rs404479	34532976	Wan J	2021-09-17	J Thromb Haemost	Kallikrein augments the anticoagulant function of the protein C system in thrombin generation.	Thrombomodulin modified thrombin generation parameter (endogenous thrombin potential)	327 European ancestry individuals	NA	9p21.3		rs404479-T	0.433	4E-8		0.46	% increase	Illumina [7000000] (imputed)	N
764	chr9	23516287	23516288	rs10965890	26433762	Liu X	2015-09-25	J Affect Disord	A genome-wide association study of bipolar disorder with comorbid eating disorder replicates the SOX2-OT region.	Bipolar disorder and eating disorder	184 European ancestry cases with bipolar disorder and eating disorder, 1,370 European ancestry controls	NA	9p21.3	CR627240	rs10965890-C	0.06	4E-6		2.27	[NR]	Affymetrix [703012]	N
764	chr9	23524434	23524435	rs78384957	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9p21.3	NR	rs78384957-A	0.0122	6E-14	(COQ9)	0.02879	NR unit decrease	Illumina [1671387] (imputed)	N
764	chr9	23535058	23535059	rs12352793	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	9p21.3	DMRTA1	rs12352793-?	NR	3E-6	(TAG 58:7)	0.39695448	[0.23-0.56] unit increase	Affymetrix [at least 2500000] (imputed)	N
764	chr9	23576499	23576500	rs79258494	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	9p21.3	NR	rs79258494-A	NR	7E-6		1.06	[NR]	Illumina [7158791] (imputed)	N
764	chr9	23576964	23576965	rs10965921	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9p21.3	NR	rs10965921-C	0.01045	1E-8	(GAMT)	0.2432	NR unit increase	Illumina [1671387] (imputed)	N
764	chr9	23581210	23581211	rs10965935	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Respiratory diseases	approximately 459,000 European ancestry individuals	NA	9p21.3		rs10965935-?	NR	2E-9				NR [~ 8900000] (imputed)	N
764	chr9	23583597	23583598	rs980896	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	9p21.3		rs980896-?	NR	1E-31				NR [~ 8900000] (imputed)	N
764	chr9	23585311	23585312	rs274947	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	9p21.3	NR	rs274947-?	NR	9E-11				Affymetrix [~ 8270000] (imputed)	N
764	chr9	23585740	23585741	rs274945	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	9p21.3	LOC101929563	rs274945-A	0.51	1E-11				NR [> 9500000] (imputed)	N
764	chr9	23585740	23585741	rs274945	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	9p21.3	LOC101929563	rs274945-A	0.511874	1E-8		1.0348055	[1.02268922369832-1.04706544896425]	NR [9572556] (imputed)	N
764	chr9	23585838	23585839	rs274943	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	9p21.3	NR	rs274943-?	NR	1E-10				Affymetrix [~ 8270000] (imputed)	N
764	chr9	23585838	23585839	rs274943	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma onset (childhood vs adult)	13,962 European ancestry childhood onset cases, 14,873 European ancestry adult onset cases	31,002 European ancestry childhood onset cases, 16,297 European ancestry adult onset cases	9p21.3	DMRTA1, ELAVL2	rs274943-T	0.516	3E-7		1.053	[1.03-1.07]	Affymetrix [9000000] (imputed)	N
764	chr9	23585838	23585839	rs274943	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	9p21.3	DMRTA1, ELAVL2	rs274943-?	NR	3E-16		1.062	[1.05-1.08]	Affymetrix [9000000] (imputed)	N
764	chr9	23585838	23585839	rs274943	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	9p21.3	DMRTA1, ELAVL2	rs274943-T	NR	8E-8		1.037	[1.02-1.05]	Affymetrix [9000000] (imputed)	N
764	chr9	23586653	23586654	rs919826	34103634	Valette K	2021-06-08	Commun Biol	Prioritization of candidate causal genes for asthma in susceptibility loci derived from UK Biobank.	Asthma	56,167 White-British ancestry cases, 352,255 White-British ancestry controls	NA	9p21.3	DMRTA1, ELAVL2	rs919826-C	0.489953782904844	5E-8		0.03575273	[0.023-0.049] unit decrease	Affymetrix [35186738] (imputed)	N
764	chr9	23587026	23587027	rs1107677	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	9p21.3	FLJ35282/ELAVL2	rs1107677-T	0.4845	6E-13		0.0182	[0.013-0.023] unit increase	Affymetrix [19819130] (imputed)	N
764	chr9	23587026	23587027	rs1107677	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	9p21.3	FLJ35282/ELAVL2	rs1107677-T	0.4845	4E-20		0.0219	[0.017-0.027] unit increase	Affymetrix [19819130] (imputed)	N
764	chr9	23587026	23587027	rs1107677	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	9p21.3	FLJ35282/ELAVL2	rs1107677-T	0.4845	2E-12		0.0165	[0.012-0.021] unit increase	Affymetrix [19819130] (imputed)	N
764	chr9	23588582	23588583	rs10965947	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	9p21.3	Intergenic	rs10965947-C	0.542255	3E-8		1.0345582	[1.02-1.05]	Affymetrix [8274727] (imputed)	N
764	chr9	23588582	23588583	rs10965947	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FEV1/FVC)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		9p21.3	FLJ35282, ELAVL2	rs10965947-T	0.39	3E-9		0.002	[0.0012-0.0028] unit increase	Affymetrix, Illumina [10900000] (imputed)	N
764	chr9	23588582	23588583	rs10965947	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FEV1)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		9p21.3		rs10965947-?	NR	4E-7		12.2	[7.48-16.92] unit increase	Affymetrix, Illumina [10900000] (imputed)	N
764	chr9	23588683	23588684	rs156394	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	9p21.3	NR	rs156394-C	0.46	5E-9			[NR]	Affymetrix [9886854] (imputed)	N
764	chr9	23588683	23588684	rs156394	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	9p21.3	NR	rs156394-C	0.46	6E-9		0.93	[0.91-0.95]	Affymetrix [9886854] (imputed)	N
764	chr9	23588683	23588684	rs156394	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	9p21.3	NR	rs156394-C	0.46	2E-9			[NR]	Affymetrix [9886854] (imputed)	N
764	chr9	23588683	23588684	rs156394	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in non-current smokers	16,488 European ancestry cases, 169,688 European ancestry controls	NA	9p21.3	NR	rs156394-C	0.46	6E-9		0.93	[0.91-0.95]	Affymetrix [9886854] (imputed)	N
764	chr9	23588683	23588684	rs156394	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in ever smokers	12,446 European ancestry cases, 59,145 European ancestry controls	NA	9p21.3	NR	rs156394-C	0.46	7E-8		0.92	[0.9-0.95]	Affymetrix [9886854] (imputed)	N
764	chr9	23588683	23588684	rs156394	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	9p21.3	ELAVL2	rs156394-T	0.53	4E-12		1.07	[1.05-1.09]	Affymetrix, Illumina [6224355] (imputed)	N
765	chr9	23645720	23645722	rs72226390	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip	15 Asian ancestry cases, 13 European ancestry cases, 15 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	9p21.3	NR	rs72226390-?	NR	1E-6		0.3	[0.21-0.41]	Illumina [539000] (imputed)	N
765	chr9	23686348	23686349	rs7873964	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	9p21.3		rs7873964-?	NR	8E-10				NR [~ 8900000] (imputed)	N
765	chr9	23687982	23687983	rs4977885	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	9p21.3		rs4977885-A	0.3971	7E-9		0.0084	[0.0057-0.0111] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
765	chr9	23692124	23692125	rs41271151	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	9p21.3		rs41271151-G	0.16	3E-8		5.53	z score increase	Affymetrix [9061022] (imputed)	N
765	chr9	23721024	23721025	rs4486291	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	9p21.3	NR	rs4486291-C	0.0698	2E-8				NR [9056863] (imputed)	N
766	chr9	23736399	23736400	rs10119773	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Anxiety	at least 23,606 European ancestry cases, at least 113,351 European ancestry controls	624,615 European ancestry cases, 1,310,854 European ancestry controls	9p21.3	ELAVL2	rs10119773-A	0.495	3E-7		0.01766928	[0.0099-0.0254] unit decrease	NR [9417325] (imputed)	N
766	chr9	23736399	23736400	rs10119773	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms (MTAG)	955,012 individuals	NA	9p21.3	NR	rs10119773-?		5E-12				NR [520857]	N
766	chr9	23736399	23736400	rs10119773	31972866	Nagel M	2020-01-23	Acta Psychiatr Scand	Genome-wide association study of the sensitivity to environmental stress and adversity (SESA) neuroticism cluster.	Sensitivity to environmental stress and adversity	351,827 European ancestry individuals	NA	9p21.3	NR	rs10119773-A	NR	4E-11		0.01576	NR unit decrease	NR [7259579]	N
766	chr9	23736399	23736400	rs10119773	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	9p21.3		rs10119773-?	NR	5E-11				NR [~ 8900000] (imputed)	N
766	chr9	23736399	23736400	rs10119773	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	9p21.3	NR	rs10119773-A	NR	2E-9		5.997	z score decrease	Affymetrix [10847151] (imputed)	N
766	chr9	23736399	23736400	rs10119773	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	9p21.3	ELAVL2	rs10119773-A	0.465998	8E-12		6.83	z score decrease	NR [10847151] (imputed)	N
766	chr9	23736399	23736400	rs10119773	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling guilty	373,380 European ancestry individuals	NA	9p21.3	ELAVL2	rs10119773-A	0.465998	4E-11		6.62	z score decrease	NR [10847151] (imputed)	N
766	chr9	23737626	23737627	rs3793577	34054130	Bralten J	2021-05-30	Neuropsychopharmacology	Genetic underpinnings of sociability in the general population.	Sociability score	342,461 European ancestry individuals	NA	9p21.3	ELAVL2	rs3793577-A	NR	5E-10		0.01335	unit increase	Affymetrix [9327396] (imputed)	N
766	chr9	23737626	23737627	rs3793577	34054130	Bralten J	2021-05-30	Neuropsychopharmacology	Genetic underpinnings of sociability in the general population.	Attending social / leisure activities	342,461 European ancestry individuals	NA	9p21.3	ELAVL2	rs3793577-?	NR	6E-6				Affymetrix [up to 9327396] (imputed)	N
766	chr9	23737626	23737627	rs3793577	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms	688,809 individuals	NA	9p21.3	NR	rs3793577-?		3E-12				NR [11140414]	N
766	chr9	23737626	23737627	rs3793577	30718901	Howard DM	2019-02-04	Nat Neurosci	Genome-wide meta-analysis of depression identifies 102 independent variants and highlights the importance of the prefrontal brain regions.	Depression	118,811 European ancestry cases, 327,427 European ancestry controls, 127,552 cases, 233,763 controls	414,055 European ancestry cases, 892,299 European ancestry controls	9p21.3	NR	rs3793577-G	0.5335	6E-22		1.0214505	[1.02-1.03]	NR [8098588] (imputed)	N
766	chr9	23737626	23737627	rs3793577	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	9p21.3	NR	rs3793577-G	0.531601309855099	7E-13		0.006601051	[0.0048-0.0084] unit increase	NR [NR]	N
766	chr9	23737626	23737627	rs3793577	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	9p21.3	NR	rs3793577-G	0.531601309855099	1E-12		0.00809184	[0.0059-0.0103] unit increase	NR [NR]	N
766	chr9	23737626	23737627	rs3793577	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	9p21.3	NR	rs3793577-G	0.531601309855099	7E-13		0.010534243	[0.0077-0.0134] unit increase	NR [NR]	N
766	chr9	23737626	23737627	rs3793577	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	9p21.3	NR	rs3793577-G	0.531601309855099	3E-12		0.008610851	[0.0062-0.011] unit increase	NR [NR]	N
766	chr9	23737626	23737627	rs3793577	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	9p21.3	NR	rs3793577-G	0.531601309855099	7E-13		0.0067410483	[0.0049-0.0086] unit increase	NR [NR]	N
766	chr9	23737626	23737627	rs3793577	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depression	688,809 European ancestry individuals	NA	9p21.3	NR	rs3793577-A	NR	3E-12		6.992	z score decrease	Affymetrix [10847151] (imputed)	N
766	chr9	23737626	23737627	rs3793577	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	9p21.3	ELAVL2	rs3793577-A	0.46612	4E-7		5.066	z score decrease	Illumina [18485882] (imputed)	N
766	chr9	23741277	23741278	rs10811965	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depression	688,809 European ancestry individuals	NA	9p21.3	NR	rs10811965-T	NR	2E-8		5.629	z score decrease	Affymetrix [10847151] (imputed)	N
766	chr9	23747790	23747791	rs1329044	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	9p21.3	Intergenic	rs1329044-T	0.8361	6E-21	(MTAG)	0.0227	[0.018-0.027] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
766	chr9	23747790	23747791	rs1329044	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	9p21.3	Intergenic	rs1329044-T	0.8361	5E-16		0.0213	[0.016-0.026] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
766	chr9	23747790	23747791	rs1329044	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	9p21.3	Intergenic	rs1329044-T	0.8357	1E-23	(MTAG)	0.0223	[0.018-0.027] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
766	chr9	23747790	23747791	rs1329044	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	9p21.3		rs1329044-T	0.8276	6E-13		0.0134	[0.0097-0.0171] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
766	chr9	23747790	23747791	rs1329044	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	9p21.3	Intergenic	rs1329044-T	0.8276	6E-18	(MTAG)	0.015	[0.012-0.018] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
766	chr9	23751699	23751700	rs12236195	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Anxiety	at least 23,606 European ancestry cases, at least 113,351 European ancestry controls	624,615 European ancestry cases, 1,310,854 European ancestry controls	9p21.3	ELAVL2	rs12236195-C	0.1849	5E-7		0.014612338	[0.0081-0.0211] unit decrease	NR [9417325] (imputed)	N
766	chr9	23751699	23751700	rs12236195	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	9p21.3	NR	rs12236195-T	0.200306853467412	2E-8		0.008193224	[0.0054-0.011] unit increase	NR [NR]	N
766	chr9	23751699	23751700	rs12236195	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	9p21.3	NR	rs12236195-T	0.200306853467412	1E-8		0.010758697	[0.0071-0.0144] unit increase	NR [NR]	N
766	chr9	23751699	23751700	rs12236195	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	9p21.3	NR	rs12236195-T	0.200306853467412	1E-8		0.0067996094	[0.0045-0.0091] unit increase	NR [NR]	N
766	chr9	23754551	23754552	rs146941795	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		ELAVL2	rs146941795-?	NR	7E-10		2.87182	[NR] unit decrease	Affymetrix [NR] (imputed)	N
766	chr9	23759367	23759368	rs12057071	30160337	Asleh R	2018-08-30	Clin Transplant	Genome Wide Association Study Reveals Novel Genetic Loci Associated With Change in Renal Function in Heart Transplant Recipients.	Glomerular filtration rate change in heart transplantation	243 European ancestry individuals, 1 American Indian ancestry individual, 7 individuals	NA	9p21.3	ELAVL2	rs12057071-C	0.11	2E-6		13.14	[7.89-18.39] unit increase	Illumina [314903] (imputed)	N
766	chr9	23762528	23762529	rs2026037	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	9p21.3	ELAVL2	rs2026037-T	NR	4E-9		0.023047743	[0.015-0.031] unit increase	Affymetrix [NR]	N
766	chr9	23772276	23772277	rs7038525	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	9p21.3	Intergenic	rs7038525-C	0.8336	8E-12		0.0208	[0.015-0.027] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
766	chr9	23772276	23772277	rs7038525	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	9p21.3	Intergenic	rs7038525-T	0.1774	1E-15	(MTAG)	0.0241	[0.018-0.03] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
766	chr9	23772276	23772277	rs7038525	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	9p21.3	NR	rs7038525-T	NR	3E-9		5.957	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
766	chr9	23772276	23772277	rs7038525	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	9p21.3	ELAVL2	rs7038525-T	NR	3E-9		5.929	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
766	chr9	23775448	23775449	rs959091	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Prostate cancer	7,438 White British ancestry cases, 118,206 White British ancestry controls	NA	9p21.3		rs959091-?	NR	1E-6		1.16942	[1.11-1.23]	NR [680312]	N
766	chr9	23799238	23799239	rs810681	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	9p21.3	NR	rs810681-A	NR	8E-9		5.77	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
766	chr9	23799238	23799239	rs810681	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	9p21.3	ELAVL2	rs810681-A	NR	2E-8		5.632	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
766	chr9	23805568	23805569	rs702222	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	9p21.3	NR	rs702222-C	0.357853	2E-11		0.043828536	[0.031-0.057] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
766	chr9	23805568	23805569	rs702222	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	9p21.3	Intergenic	rs702222-T	0.3587	2E-11		0.02	[0.014-0.026] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
766	chr9	23805568	23805569	rs702222	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	9p21.3	NR	rs702222-T	NR	5E-12		6.905	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
766	chr9	23810887	23810888	rs2771046	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	9p21.3	NR	rs2771046-A	0.188	2E-8		0.00946371	[0.0062-0.0128] unit increase	NR [~ 9732723] (imputed)	N
766	chr9	23813839	23813840	rs702223	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	9p21.3	ELAVL2	rs702223-A	NR	1E-10		6.409	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
766	chr9	23820069	23820070	rs11793074	30804566	Lane JM	2019-02-25	Nat Genet	Biological and clinical insights from genetics of insomnia symptoms.	Insomnia symptoms (never/rarely vs. usually)	129,270 European ancestry cases, 108,357 European ancestry controls	17,140 European ancestry cases, 61,850 European ancestry controls	9p21.3	ELAVL2	rs11793074-A	0.853086	2E-7		1.03	[1.02-1.05]	Affymetrix [14661600] (imputed)	N
766	chr9	23820069	23820070	rs11793074	30804566	Lane JM	2019-02-25	Nat Genet	Biological and clinical insights from genetics of insomnia symptoms.	Insomnia symptoms (never/rarely vs. sometimes/usually)	345,022 European ancestry cases, 108,357 European ancestry controls	17,140 European ancestry cases, 61,850 European ancestry controls	9p21.3	ELAVL2	rs11793074-A	0.853086	7E-9		1.03	[1.02-1.05]	Affymetrix [14661600] (imputed)	N
766	chr9	23823398	23823399	rs783562	34050765	Zhang L	2021-05-29	J Clin Endocrinol Metab	Joint genome-wide association analyses identified 49 novel loci for age at natural menopause.	Age at menopause	181,219 European ancestry individuals, 43,861 East Asian ancestry individuals	NA	9p21.3		rs783562-A	0.4	1E-8		0.07	unit increase	Illumina [2093892] (imputed)	N
766	chr9	23823398	23823399	rs783562	34050765	Zhang L	2021-05-29	J Clin Endocrinol Metab	Joint genome-wide association analyses identified 49 novel loci for age at natural menopause.	Age at menopause	181,219 European ancestry individuals	NA	9p21.3		rs783562-A	0.4	5E-7		0.07	unit increase	Illumina [2398641] (imputed)	N
766	chr9	23831657	23831658	rs10966092	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	9p21.3	NR	rs10966092-C	0.267	2E-17		0.0103705	[0.008-0.0128] unit decrease	NR [9732723] (imputed)	N
766	chr9	23831657	23831658	rs10966092	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	9p21.3	NR	rs10966092-C	0.267	1E-12		0.020486193	[0.015-0.026] unit decrease	NR [~ 10000000] (imputed)	N
766	chr9	23831657	23831658	rs10966092	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	9p21.3	NR	rs10966092-C	0.267	2E-10		0.0104734	[0.0072-0.0137] unit increase	NR [9732723] (imputed)	N
766	chr9	23842339	23842340	rs1775118	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	9p21.3	ENSG00000231460	rs1775118-A	NR	2E-9		5.998	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
766	chr9	23843292	23843293	rs12375898	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	9p21.3		rs12375898-G	0.738	2E-13		0.01	[0.008-0.012] unit increase	NR [NR] (imputed)	N
766	chr9	23850235	23850236	rs1775124	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Verbal-numerical reasoning	171,304 British ancestry individuals	NA	9p21.3		rs1775124-?	NR	2E-8				NR [7857346] (imputed)	N
767	chr9	23857082	23857083	rs1699462	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	9p21.3	NR	rs1699462-T	NR	5E-9		5.863	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
767	chr9	23857082	23857083	rs1699462	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	9p21.3	ENSG00000231460	rs1699462-T	NR	4E-11		6.598	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
767	chr9	23887279	23887280	rs10966119	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	9p21.3	NR	rs10966119-C	NR	2E-9		5.966	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
767	chr9	23903270	23903271	rs10120920	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9p21.3	NR	rs10120920-C	0.01045	2E-8	(TOMM70)	0.0222	NR unit increase	Illumina [1671387] (imputed)	N
767	chr9	23910399	23910400	rs62570303	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	9p21.3	ENSG00000237414	rs62570303-T	NR	4E-8		5.513	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
767	chr9	23911097	23911098	rs34734335	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	9p21.3	ENSG00000237414	rs34734335-A	NR	7E-9		5.803	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
767	chr9	23964169	23964170	rs7023790	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	9p21.3	NR	rs7023790-?	NR	5E-8		5.448	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
767	chr9	23967939	23967940	rs10757463	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	9p21.3	Intergenic	rs10757463-A	0.4834	2E-8	(MTAG)	0.0093	[0.006-0.0126] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
767	chr9	23967939	23967940	rs10757463	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	9p21.3	Intergenic	rs10757463-A	0.4851	2E-8	(MTAG)	0.0074	[0.0049-0.0099] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
768	chr9	24017664	24017665	rs35456165	30576415	Gilly A	2019-08-01	Bioinformatics	Very low-depth whole-genome sequencing in complex trait association studies.	Hematology traits	1,225 Mylopotamos (founder/genetic isolate) individuals	NA	9p21.3	intergenic	rs35456165-?	NR	7E-8	(Red cell distribution width)	0.29	[0.19-0.39] unit decrease	Illumina [14948665] (imputed)	N
768	chr9	24092071	24092072	rs4246856	21502573	Smith NL	2011-04-21	Circulation	Genetic predictors of fibrin D-dimer levels in healthy adults.	D-dimer levels	21,052 European ancestry individuals	NA	9p21.3	intergenic	rs4246856-C	0.201	6E-6		0.0333	[NR] % increase	Affymetrix, Illumina [2522393] (imputed)	N
768	chr9	24111279	24111280	rs2225614	19197348	Lowe JK	2009-02-06	PLoS Genet	Genome-wide association studies in an isolated founder population from the Pacific Island of Kosrae.	Quantitative traits	2,906 Kosraen individuals	NA	9p21.3	intergenic	rs2225614-C	0.50	3E-6	(weight)	0.21	[NR] lb. decrease	Affymetrix [408775]	N
769	chr9	24170626	24170627	rs36057127	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 19)	2,187 European ancestry individuals	NA	9p21.3	NR	rs36057127-A	0.02293	4E-6		0.4623	[0.27-0.66] unit decrease	Illumina [10677593] (imputed)	N
769	chr9	24183977	24183978	rs503681	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Rapid automised naming of digits	2,563 European ancestry individuals	NA	9p21.3	Intergenic	rs503681-C	0.623905714	8E-6		0.153344	[0.086-0.221] unit decrease	Illumina [6952813] (imputed)	N
769	chr9	24241832	24241833	rs17698894	31902109	Li D	2020-01-04	Genes Genomics	Progressive effects of single-nucleotide polymorphisms on 16 phenotypic traits based on longitudinal data.	Physiological traits	up to 6,835 Korean ancestry individuals	NA	9p21.3	ELAVL2, IZUMO3	rs17698894-A	0.2245	6E-6	(BMI)	0.01691	NR unit decrease	Affymetrix [305158]	N
770	chr9	24260530	24260531	rs17771607	31902109	Li D	2020-01-04	Genes Genomics	Progressive effects of single-nucleotide polymorphisms on 16 phenotypic traits based on longitudinal data.	Physiological traits	up to 6,835 Korean ancestry individuals	NA	9p21.3	ELAVL2, IZUMO3	rs17771607-G	0.2172	6E-6	(weight)	0.04419	NR unit decrease	Affymetrix [305158]	N
771	chr9	24431791	24431792	rs118043898	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	9p21.3	NR	rs118043898-?	NR	5E-8	(Latino)	1.6762	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
772	chr9	24512877	24512878	rs2247554	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	9p21.3	TUSC1	rs2247554-?	NR	5E-6	(isoleucine)	0.5928334	[0.34-0.85] unit decrease	Affymetrix [at least 2500000] (imputed)	N
772	chr9	24520193	24520194	rs1411216	29559929	Amare AT	2018-03-06	Front Psychiatry	Association of the Polygenic Scores for Personality Traits and Response to Selective Serotonin Reuptake Inhibitors in Patients with Major Depressive Disorder.	Remission after SSRI treatment in MDD or openness	865 individuals with SSRI response data, 260,861 individuals with personality trait data	NA	9p21.3	CRIPAK	rs1411216-A	NR	5E-7				NR [NR] (imputed)	N
772	chr9	24530614	24530615	rs2805064	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	9p21.3		rs2805064-C	0.7291	4E-9		0.0093	[0.0062-0.0124] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
772	chr9	24530614	24530615	rs2805064	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	9p21.3	Intergenic	rs2805064-C	0.7291	1E-9	(MTAG)	0.009	[0.0061-0.0119] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
772	chr9	24560576	24560577	rs2805062	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	9p21.3	NR	rs2805062-?	NR	1E-10	(Latino)	1.3293	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
772	chr9	24582746	24582747	rs2844016	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	9p21.3	IZUMO3	rs2844016-T	0.2935	2E-9		1.0269569		Affymetrix [11880941] (imputed)	N
773	chr9	24647566	24647567	rs12338478	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	9p21.3	NR	rs12338478-?	NR	6E-17				Affymetrix [NR]	N
773	chr9	24720231	24720232	rs10491833	24159190	Seppala I	2013-10-24	Eur Heart J	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Symmetrical dimethylarginine levels	5110 European ancestry individuals	NA	9p21.3	NR	rs10491833-C	0.258	4E-6		0.111	[0.064-0.158] unit decrease	Affymetrix, Illumina [10085758] (imputed)	N
773	chr9	24732823	24732824	rs10757483	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	9p21.3	NR	rs10757483-?	NR	8E-7				Affymetrix [NR]	N
773	chr9	24740387	24740388	rs7859091	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Longevity	up to 482,000 European ancestry individuals	NA	9p21.3	NR	rs7859091-G	NR	8E-6		0.02365	[0.013-0.034] unit decrease	Illumina [~ 540852]	N
773	chr9	24761756	24761757	rs117171752	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Zoster infection	522 European ancestry cases, 351,740 European ancestry controls, 2,209 East Asian ancestry cases, 166,603 East Asian ancestry controls	NA	9p21.3		rs117171752-G	NR	5E-8		1.2266	[0.79-1.67] unit increase	Affymetrix, Illumina [20457058] (imputed)	N
773	chr9	24761756	24761757	rs117171752	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Zoster infection	2,209 East Asian ancestry cases, 166,603 East Asian ancestry controls	NA	9p21.3		rs117171752-G	0.007405229	5E-8		1.2265667	[0.79-1.67] unit increase	Illumina [13428120] (imputed)	N
774	chr9	24836506	24836507	rs9298857	29532581	Hallfors J	2018-03-13	Addict Biol	Genome-wide association study in Finnish twins highlights the connection between nicotine addiction and neurotrophin signaling pathway.	Nicotine withdrawal symptom count	1,703 Finnish ancestry ever smoker individuals from up to 739 families	NA	9p21.3	NR	rs9298857-C	0.482	3E-6		0.34	[0.2-0.48] unit increase	Illumina [9469131] (imputed)	N
774	chr9	24838851	24838852	rs2038965	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Ruminococcus belonging to family Lachnospiraceae)	1,068 Japanese ancestry individuals	NA	9p21.3	intergenic	rs2038965-G	0.26	1E-6		0.174	[0.1-0.24] unit increase	Illumina [6380737] (imputed)	N
775	chr9	24906801	24906802	rs4316218	32752121	Nedoszytko B	2020-07-31	Int J Mol Sci	Results from a Genome-Wide Association Study (GWAS) in Mastocytosis Reveal New Gene Polymorphisms Associated with WHO Subgroups.	Mastocytosis	234 European ancestry cases, 5,606 European ancestry controls	NA	9p21.3	NR	rs4316218-C	0.2978	7E-8		1.67	[1.48-1.86]	Illumina [281811]	N
775	chr9	24911673	24911674	rs1318995	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	9p21.3	NR	rs1318995-G	0.48090200000000005	4E-9		0.0118184	[0.0079-0.0157] unit increase	Affymetrix [16583148] (imputed)	N
775	chr9	24957549	24957550	rs1381151	31170924	Kong S	2019-06-06	BMC Med Genet	Identification of female-specific genetic variants for metabolic syndrome and its component traits to improve the prediction of metabolic syndrome in females.	Triglyceride levels	4,659 Korean ancestry females	5,273 Korean ancestry females	9p21.3	intergenic	rs1381151-A	0.123	8E-6		9.1438	[5.12-13.16] unit increase	Affymetrix [NR] (imputed)	N
775	chr9	24973796	24973797	rs10738700	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	9p21.3	NR	rs10738700-A	0.569364	6E-11		0.0204816	[0.014-0.027] unit increase	Affymetrix [16577424] (imputed)	N
776	chr9	25069106	25069106	rs57247929	34815687	Wu SE	2021-11-16	J Inflamm Res	A Genome-Wide Association Study Identifies Novel Risk Loci for Sarcopenia in a Taiwanese Population.	Low hand grip strength	34 Taiwanese ancestry cases, 62 Taiwanese ancestry controls	NA	9p21.3		rs57247929-?	0.1053	7E-6		7.71		Affymetrix [NR]	N
776	chr9	25069551	25069552	rs184374109	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric bone mineral density (spine)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	9p21.3	IZUMO3	rs184374109-C	0.05	1E-8	(Males)	0.737057	[0.49-0.99] unit increase	Illumina [~ 6600000] (imputed)	N
776	chr9	25069551	25069552	rs184374109	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric bone mineral content (spine)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	9p21.3	IZUMO3	rs184374109-C	0.05	1E-7	(Males)	0.605973	[0.38-0.83] unit increase	Illumina [~ 6600000] (imputed)	N
776	chr9	25100015	25100016	rs11794033	32308125	Wolking S	2020-04-20	Pharmacogenomics	Pharmacoresponse in genetic generalized epilepsy: a genome-wide association study.	Response to lamotrigine in genetic generalized epilepsy	137 European ancestry responders, 250 European ancestry non-responders	NA	9p21.3	intergenic	rs11794033-?	NR	8E-6				Affymetrix, Illumina [at least 3287443] (imputed)	N
776	chr9	25115153	25115154	rs3118252	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	9p21.3	TUSC1	rs3118252-G	0.416563	6E-9		0.0083153	[0.0055-0.0111] unit decrease	Affymetrix [12370749]	N
777	chr9	25192572	25192573	rs181881383	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Ejection fraction in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	9p21.3	NR	rs181881383-?	NR	2E-8				Affymetrix [5486770] (imputed)	N
777	chr9	25211192	25211193	rs113209956	31116379	Meier SM	2019-05-22	JAMA Psychiatry	Genetic Variants Associated With Anxiety and Stress-Related Disorders: A Genome-Wide Association Study and Mouse-Model Study.	Anxiety and stress-related disorders	12,655 European ancestry cases, 19,225 European ancestry controls	NA	9p21.3	intergenic	rs113209956-C	NR	6E-8		1.2077295	[1.13-1.29]	Illumina [8933939] (imputed)	N
777	chr9	25232977	25232978	rs59283172	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Major depressive disorder (MTAG)	at least 170,756 European ancestry cases, at least 329,443 European ancestry controls	NA	9p21.3	NR	rs59283172-A	0.1081	8E-9		0.03844266	[0.025-0.052] unit decrease	NR [NR]	N
777	chr9	25232977	25232978	rs59283172	30718901	Howard DM	2019-02-04	Nat Neurosci	Genome-wide meta-analysis of depression identifies 102 independent variants and highlights the importance of the prefrontal brain regions.	Depression	118,811 European ancestry cases, 327,427 European ancestry controls, 127,552 cases, 233,763 controls	414,055 European ancestry cases, 892,299 European ancestry controls	9p21.3	NR	rs59283172-G	0.8931	1E-6		1.017294	[1.01-1.02]	NR [8098588] (imputed)	N
777	chr9	25233483	25233484	rs10966811	22633400	Kosova G	2012-05-23	Am J Hum Genet	Genome-wide association study identifies candidate genes for male fertility traits in humans.	Male fertility	269 Hutterite males	NA	9p21.3	TUSC1	rs10966811-T	0.27	6E-6	(Family size, recessive model)			Affymetrix [248210]	N
777	chr9	25235062	25235063	rs12057031	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Help-seeking from a GP	113,262 British ancestry cases, 219,360 British ancestry controls	NA	9p21.3	NR	rs12057031-C	0.892	5E-9		1.0504202	[1.03-1.07]	NR [5276842] (imputed)	N
777	chr9	25236858	25236859	rs73474148	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	9p21.3	NR	rs73474148-C	0.1095	7E-8		0.0102	[0.0065-0.0139] unit decrease	NR [7666894] (imputed)	N
777	chr9	25241315	25241316	rs10738708	30369944	Balakrishnan P	2018-10-12	Front Genet	Genetic Variants Related to Cardiometabolic Traits Are Associated to B Cell Function, Insulin Resistance, and Diabetes Among AmeriCan Indians: The Strong Heart Family Study.	HOMA-B (corrected for HOMA-IR)	1,892 American Indian ancestry individuals	NA	9p21.3	TUSC1, LOC10012966	rs10738708-?	0.43	4E-7		17.26	unit increase	Illumina [120975] (imputed)	N
777	chr9	25262830	25262831	rs1662230	30713548	Schurz H	2019-01-18	Front Genet	A Sex-Stratified Genome-Wide Association Study of Tuberculosis Using a Multi-Ethnic Genotyping Array.	Tuberculosis	242 South African admixed female cases, 168 South African admixed male cases, 223 South African admixed female controls, 182 South African admixed male controls	NA	9p21.3	RN7SKP120	rs1662230-G	NR	9E-6		2.278	[1.58-3.27]	Illumina [848325]	N
778	chr9	25300642	25300643	rs1758747	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	9p21.3		rs1758747-A	0.6962	2E-9		0.0092	[0.0063-0.0121] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
778	chr9	25337610	25337611	rs117660864	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	9p21.3	Intergenic	rs117660864-G	0.997	2E-6	(AA)	0.199	unit increase	Illumina [NR] (imputed)	N
778	chr9	25341332	25341333	rs183456655	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	9p21.3	Intergenic	rs183456655-G	0.997	2E-6	(AA)	0.199	unit increase	Illumina [NR] (imputed)	N
778	chr9	25360083	25360084	rs191623547	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	9p21.3	Intergenic	rs191623547-C	0.997	2E-6	(AA)	0.199	unit increase	Illumina [NR] (imputed)	N
778	chr9	25395084	25395085	rs183029213	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	9p21.3	JA374875	rs183029213-C	0.997	8E-7	(AA)	0.209	unit increase	Illumina [NR] (imputed)	N
778	chr9	25410143	25410144	rs184680785	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	9p21.3	Intergenic	rs184680785-C	0.997	3E-6	(AA)	0.17	unit increase	Illumina [NR] (imputed)	N
778	chr9	25414050	25414051	rs7021404	23934736	Yu B	2013-08-11	Genet Epidemiol	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels (Dihydroxy docosatrienoic acid)	1,260 African American individuals	NA	9p21.3	TUSC1	rs7021404-C		8E-6		0.11	[0.06-0.15] unit decrease	Affymetrix [~ 2500000] (imputed)	N
778	chr9	25419353	25419354	rs191531070	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	9p21.3	Intergenic	rs191531070-T	0.998	6E-7	(AA)	0.225	unit increase	Illumina [NR] (imputed)	N
778	chr9	25425072	25425073	rs181672678	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	9p21.3	Intergenic	rs181672678-G	0.998	6E-7	(AA)	0.225	unit increase	Illumina [NR] (imputed)	N
778	chr9	25426264	25426265	rs187930576	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	9p21.3	Intergenic	rs187930576-C	0.998	6E-7	(AA)	0.226	unit increase	Illumina [NR] (imputed)	N
779	chr9	25442017	25442018	rs188120168	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	9p21.3	Intergenic	rs188120168-C	0.998	1E-6	(AA)	0.23	unit increase	Illumina [NR] (imputed)	N
779	chr9	25449121	25449122	rs12552736	20031603	Marroni F	2009-08-01	Circ Cardiovasc Genet	A genome-wide association scan of RR and QT interval duration in 3 European genetically isolated populations: the EUROSPAN project.	RR interval (heart rate)	2,325 European ancestry individuals	NA	9p21.3	intergenic	rs12552736-G	0.06	2E-6		0.25	[0.15-0.35] unit increase	Illumina [~ 318327]	N
779	chr9	25452811	25452812	rs13300284	20031603	Marroni F	2009-08-01	Circ Cardiovasc Genet	A genome-wide association scan of RR and QT interval duration in 3 European genetically isolated populations: the EUROSPAN project.	RR interval (heart rate)	2,325 European ancestry individuals	NA	9p21.3	intergenic	rs13300284-A	0.04	4E-6		0.26	[0.14-0.38] unit increase	Illumina [~ 318327]	N
779	chr9	25458900	25458901	rs183397371	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	9p21.3	Intergenic	rs183397371-C	0.998	1E-6	(AA)	0.231	unit increase	Illumina [NR] (imputed)	N
779	chr9	25501296	25501297	rs2210430	23728906	Byrne EM	2013-05-31	Am J Med Genet B Neuropsychiatr Genet	A genome-wide association study of sleep habits and insomnia.	Sleep quality	2,315 European ancestry individuals	NA	9p21.3	TUSC1	rs2210430-T	0.01	9E-6		0.65	[0.36-0.94] unit increase	Illumina [2380486] (imputed)	N
779	chr9	25502381	25502382	rs62533293	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris heterochromicity	329 South Asian ancestry individuals		9p21.3	CTIF	rs62533293-G	0.042	9E-6		0.895	[0.5-1.29] unit decrease	Illumina [640625] (imputed)	N
779	chr9	25510865	25510866	rs112749493	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	9p21.3	NR	rs112749493-?	NR	1E-6		4.89	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
779	chr9	25527620	25527621	rs12003047	31320941	Igarashi M	2019-07-05	Genes Nutr	Identification of the 12q24 locus associated with fish intake frequency by genome-wide meta-analysis in Japanese populations.	Fish intake frequency	12,603 Japanese ancestry individuals	NA	9p21.3	IZUMO3, TUSC1	rs12003047-C	0.015	9E-6		0.431	[0.24-0.62] unit increase	Illumina [296675]	N
779	chr9	25551356	25551357	rs17774966	21116278	Furney SJ	2010-11-30	Mol Psychiatry	Genome-wide association with MRI atrophy measures as a quantitative trait locus for Alzheimer's disease.	Entorhinal cortical thickness (Alzheimer's disease interaction)	424 European ancestry mild cognitive impairment cases, 236 European ancestry Alzheimer's disease cases, 279 European ancestry controls	NA	9p21.3	TUSC1	rs17774966-?	NR	8E-6		0.153	[NR] unit increase	Illumina [478011]	N
780	chr9	25646815	25646816	rs7871606	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Bipolar disorder x sex interaction	19,924 European ancestry cases, 30,547 European ancestry controls	NA	9p21.2	BIP_interaction	rs7871606-T	0.7645	8E-6		0.264	[0.15-0.38] unit increase	NR [NR] (imputed)	N
780	chr9	25649144	25649145	rs12341335	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or recurrent major depressive disorder x sex interaction (3df)	31,567 European ancestry schizophrenia cases,19,924 European ancestry bipolar disorder cases, 5,314 European ancestry recurrent major depressive disorder cases, 78,190 European ancestry controls, 1,836 East Asian ancestry schizophrenia cases, 3,383 East Asian ancestry controls	NA	9p21.2	NR	rs12341335-C	NR	1E-5				NR [NR] (imputed)	N
780	chr9	25649144	25649145	rs12341335	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Bipolar disorder x sex interaction	19,924 European ancestry cases, 30,547 European ancestry controls	NA	9p21.2	IZUMO3, TUSC1	rs12341335-T	0.8957	2E-7		0.3726	[0.23-0.51] unit increase	NR [NR] (imputed)	N
780	chr9	25659636	25659637	rs10124907	25085501	Bunyavanich S	2014-08-02	BMC Med Genomics	Integrated genome-wide association, coexpression network, and expression single nucleotide polymorphism analysis identifies novel pathway in allergic rhinitis.	Allergic rhinitis	872 European ancestry cases, 1,193 Latino cases, 647 African American/Afro-Caribbean cases, 1,162 European ancestry controls, 1,133 Latino controls, 626 African American/Afro-Caribbean controls	NA	9p21.2	TUSC1	rs10124907-?	NR	6E-7	(Latino)	1.43	[1.19-1.75]	Affymetrix, Illumina [NR] (imputed)	N
780	chr9	25669747	25669748	rs141521929	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		9p21.2	Intergenic	rs141521929-T	0.005	4E-6	(liability model)	0.62	[0.37-0.87] unit increase	NR [19725427] (imputed)	N
781	chr9	25691226	25691227	rs9942904	31557306	Wang RS	2019-09-26	Clin Pharmacol Ther	Pharmacogenomics and Placebo Response in a Randomized Clinical Trial in Asthma.	Subjective response to placebo treatment in childhood asthma (change in cough/wheeze)	250 European ancestry children	NA	9p21.2	TUSC1	rs9942904-T	0.33	3E-6		0.82	NR unit increase	Illumina [NR] (imputed)	N
781	chr9	25743019	25743020	rs10491876	33232274	Mohammadnejad A	2020-11-24	Aging (Albany NY)	Generalized correlation coefficient for genome-wide association analysis of cognitive ability in twins.	Cognitive function (generalized correlation coefficient)	900 Danish ancestry dizygotic twins, 272 Danish ancestry monozygotic twins	NA	9p21.2	NR	rs10491876-?	NR	6E-7			[NR]	Illumina [5779266] (imputed)	N
781	chr9	25755951	25755952	rs1231375	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling hurt	372,047 European ancestry individuals	NA	9p21.2	NR	rs1231375-T	0.138763	1E-8		5.69	z score increase	NR [10847151] (imputed)	N
781	chr9	25774341	25774342	rs1147805	27595289	Goyal RK	2016-09-05	Bone Marrow Transplant	Novel HLA-DP region susceptibility loci associated with severe acute GvHD.	Acute graft versus host disease in bone marrow transplantation (recipient effect)	291 European ancestry recipients with acute graft versus host disease, 288 European ancestry recipients without acute graft versus host disease	NA	9p21.2	Intergenic	rs1147805-?		9E-8				Affymetrix [905761]	N
781	chr9	25804284	25804285	rs1782032	25628336	Hromatka BS	2015-01-26	Hum Mol Genet	Genetic variants associated with motion sickness point to roles for inner ear development, neurological processes and glucose homeostasis.	Motion sickness	80,494 European ancestry individuals	NA	9p21.2	TUSC1	rs1782032-G	0.544	9E-9		0.031	[0.020-0.042] unit decrease	Illumina [7428049] (imputed)	N
782	chr9	25859708	25859709	rs1147813	26835600	Hu Y	2016-02-02	Nat Commun	GWAS of 89,283 individuals identifies genetic variants associated with self-reporting of being a morning person.	Morning vs. evening chronotype	38,937 European ancestry morning chronotype individuals, 50,346 European ancestry evening chronotype individuals	NA	9p21.2	NR	rs1147813-?	NR	8E-6				Illumina [7427422] (imputed)	N
783	chr9	26038529	26038530	rs62543707	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Caudal anterior-cingulate cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	9p21.2	NR	rs62543707-?		6E-6				Illumina [4322238] (imputed)	N
783	chr9	26064684	26064685	rs75078187	26220383	Jang HW	2015-06-02	Epilepsy Res	GWAS identifies two susceptibility loci for lamotrigine-induced skin rash in patients with epilepsy.	Epilepsy and lamotrigine-induced maculopapular eruptions	34 Korean ancestry cases, 1,080 Korean ancestry healthy controls	NA	9p21.2	LOC100506422	rs75078187-?	0.01	2E-7		8.1	[NR]	Affymetrix [4893794] (imputed)	N
783	chr9	26077465	26077466	rs10812342	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	9p21.2	NR	rs10812342-?	NR	2E-6				Affymetrix [NR]	N
784	chr9	26133807	26133808	rs2571521	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Pursuit maintenance gain in psychotic disorders	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases	NA	9p21.2	LOC100506422	rs2571521-?	NR	3E-7	(African)			Illumina [4404269] (imputed)	N
784	chr9	26172702	26172703	rs2571511	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Pursuit maintenance gain	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	9p21.2	LOC100506422	rs2571511-A	0.1318	5E-6	(African)			Illumina [4404269] (imputed)	N
784	chr9	26208856	26208857	rs4978053	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue/subcutaneous adipose tissue ratio	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	9p21.2	TUSC1	rs4978053-C	0.06	6E-6	(overall)			Affymetrix, Illumina [2500000] (imputed)	N
784	chr9	26212727	26212728	rs7032316	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	9p21.2	NR	rs7032316-T	0.434	2E-8		0.00615635	[0.004-0.0083] unit decrease	NR [9732723] (imputed)	N
785	chr9	26228657	26228658	rs149850605	28090653	Liu Y	2017-01-16	Clin Pharmacol Ther	Genome-Wide Study Links PNPLA3 Variant With Elevated Hepatic Transaminase After Acute Lymphoblastic Leukemia Therapy.	Alanine aminotransferase (ALT) levels after remission induction therapy in actute lymphoblastic leukemia (ALL)	up to 488 European ancestry cases, up to 111 African American cases, up to 60 Hispanic cases, up to 56 other ancestry cases	NA	9p21.2	LOC100506422	rs149850605-T		5E-6		6.09	[1.16-31.9]	Affymetrix, Illumina [NR] (imputed)	N
785	chr9	26337143	26337144	rs10967318	32180562	Kulyte A	2020-01-25	Mol Metab	Genome-wide association study of adipocyte lipolysis in the GENetics of adipocyte lipolysis (GENiAL) cohort.	Stimulated adipocyte lipolysis	874 European ancestry individuals	NA	9p21.2	NR	rs10967318-G	0.989026	8E-6		0.321	[0.18-0.46] unit decrease	NR [9260588] (imputed)	N
786	chr9	26457169	26457170	rs1328425	34624637	Zainul Abidin FN	2021-09-21	Neuroimage Clin	Glucose hypometabolism in the Auditory Pathway in Age Related Hearing Loss in the ADNI cohort.	Age related hearing loss-related regional glucose metabolism (Cochlear nucleus)	228 European ancestry cases, 587 European ancestry controls	NA	9p21.2		rs1328425-?	NR	9E-7		0.23	[0.14-0.32] unit increase	Illumina [5082878] (imputed)	N
786	chr9	26458549	26458550	rs72716237	28167095	Forno E	2017-02-04	J Allergy Clin Immunol	Genome-wide interaction study of dust mite allergen on lung function in children with asthma.	Lung function (FEV1) in asthma (dust mite allergen exposure interaction)	440 Puerto Rican ancestry child cases	497 European ancestry child cases, 605 Hispanic child cases	9p21.2	NR	rs72716237-A	0.01	1E-6				Illumina [1830000] (imputed)	N
786	chr9	26469904	26469905	rs62544064	24939585	Fransen E	2014-06-18	Eur J Hum Genet	Genome-wide association analysis demonstrates the highly polygenic character of age-related hearing impairment.	Age-related hearing impairment	1,489 European ancestry individuals	NA	9p21.2	intergenic	rs62544064-?		8E-6	(PC2)	0.1867	[NR] unit increase	Illumina [4167292] (imputed)	N
787	chr9	26570612	26570613	rs7847445	27629369	Gao J	2016-09-15	Neuropsychopharmacology	Genome-Wide Association Study of Loneliness Demonstrates a Role for Common Variation.	Loneliness	2,075 European ancestry cases, 3,875 European ancestry controls, 427 African American cases, 398 African American controls, 294 Hispanic cases, 327 Hispanic controls, 57 cases, 73 controls	NA	9p21.2	LOC100506422, CAAP1	rs7847445-?	NR	5E-6	(EA)	0.0517	[0.03-0.074] unit increase	Illumina [7176022] (imputed)	N
787	chr9	26585712	26585713	rs77196186	28763065	Xia K	2017-08-01	Transl Psychiatry	Genome-wide association analysis identifies common variants influencing infant brain volumes.	Brain volume in infants (grey matter)	295 European, African American, Asian, Native American and other admixed ancestry infants, 17 European, African American, Asian, Native American and other admixed ancestry sibling pairs, 116 European, African American, Asian, Native American and other admixed ancestry twin pairs.	NA	9p21.2	CAAP1	rs77196186-C	NR	6E-7		2.03	percent decrease	Affymetrix [8762422] (imputed)	N
788	chr9	26614846	26614847	rs10812428	19483685	Daly AK	2009-05-31	Nat Genet	HLA-B*5701 genotype is a major determinant of drug-induced liver injury due to flucloxacillin.	Drug-induced liver injury (flucloxacillin)	58 European ancestry cases, 282 European ancestry controls	NA	9p21.2	C9org82	rs10812428-?	0.31	1E-6		2.85	[NR]	Illumina [866399]	N
788	chr9	26629306	26629307	rs1926774	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	9p21.2	PLAA	rs1926774-?	NR	3E-6	(PC 34:2)	0.17579983	[0.1-0.25] unit decrease	Affymetrix [at least 2500000] (imputed)	N
788	chr9	26647547	26647548	rs1964390	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	9p21.2	NR	rs1964390-G	0.75398732806241	3E-9		0.0063365228	[0.0042-0.0084] unit increase	NR [NR]	N
788	chr9	26647547	26647548	rs1964390	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	9p21.2	NR	rs1964390-G	0.75398732806241	5E-9		0.0077621737	[0.0052-0.0104] unit increase	NR [NR]	N
788	chr9	26647547	26647548	rs1964390	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	9p21.2	NR	rs1964390-G	0.75398732806241	2E-9		0.010141554	[0.0068-0.0135] unit increase	NR [NR]	N
788	chr9	26647547	26647548	rs1964390	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	9p21.2	NR	rs1964390-G	0.75398732806241	7E-9		0.008257198	[0.0055-0.0111] unit increase	NR [NR]	N
788	chr9	26647547	26647548	rs1964390	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	9p21.2	NR	rs1964390-G	0.75398732806241	2E-9		0.006477494	[0.0044-0.0086] unit increase	NR [NR]	N
788	chr9	26694887	26694888	rs13294589	22318345	Cha PC	2012-02-09	J Hum Genet	A genome-wide association study identifies SNP in DCC is associated with gallbladder cancer in the Japanese population.	Gallbladder cancer	41 Japanese ancestry cases, 866 Japanese ancestry controls	30 Japanese ancestry cases, 898 Japanese ancestry controls	9p21.2	NR	rs13294589-G	0.11	2E-6		12.78	[4.43-36.83]	Illumina [425706] (imputed)	N
788	chr9	26708667	26708668	rs1434482	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	9p21.2	PLAA	rs1434482-?	NR	6E-6	(PC 32:2)	0.20008458	[0.11-0.29] unit decrease	Affymetrix [at least 2500000] (imputed)	N
788	chr9	26715293	26715294	rs55898176	33138277	Cismaru AL	2020-10-29	Genes (Basel)	Genome-Wide Association Study of Metamizole-Induced Agranulocytosis in European Populations.	Metamizole-induced agranulocytosis	30 European ancestry cases, 191 European ancestry controls	41 European ancestry cases, 273 European ancestry controls	9p21.2	NR	rs55898176-T	NR	1E-7		4.01	[2.41-6.68]	Illumina [~ 7000000] (imputed)	N
788	chr9	26725701	26725702	rs10511779	26174813	Alemany S	2015-07-14	Am J Med Genet B Neuropsychiatr Genet	New suggestive genetic loci and biological pathways for attention function in adult attention-deficit/hyperactivity disorder.	Attention function in attention deficit hyperactive disorder	479 European ancestry adult cases	NA	9p21.2	CAAP1	rs10511779-T	0.144	6E-6	(HRTSE)	1.1	[0.63-1.57] unit increase	Illumina [799713]	N
788	chr9	26737655	26737656	rs10967505	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	9p21.2	NR	rs10967505-A	NR	4E-7		1.09	[NR]	Illumina [7158791] (imputed)	N
789	chr9	26746589	26746590	rs10967508	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	9p21.2	PLAA	rs10967508-?	NR	9E-6	(TAG 46:0)	0.24870437	[0.14-0.36] unit decrease	Affymetrix [at least 2500000] (imputed)	N
789	chr9	26746921	26746922	rs10967509	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	9p21.2	NR	rs10967509-A	0.37938081491822	5E-9		0.0055406573	[0.0037-0.0074] unit decrease	NR [NR]	N
789	chr9	26746921	26746922	rs10967509	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	9p21.2	NR	rs10967509-A	0.37938081491822	1E-8		0.0068233344	[0.0045-0.0092] unit decrease	NR [NR]	N
789	chr9	26746921	26746922	rs10967509	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	9p21.2	NR	rs10967509-A	0.37938081491822	3E-9		0.008919985	[0.006-0.0119] unit decrease	NR [NR]	N
789	chr9	26746921	26746922	rs10967509	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	9p21.2	NR	rs10967509-A	0.37938081491822	1E-8		0.007274365	[0.0048-0.0098] unit decrease	NR [NR]	N
789	chr9	26746921	26746922	rs10967509	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	9p21.2	NR	rs10967509-A	0.37938081491822	3E-9		0.0057034087	[0.0038-0.0076] unit decrease	NR [NR]	N
789	chr9	26754895	26754896	rs73642995	28203683	Heit JA	2017-02-16	Thromb Haemost	Identification of unique venous thromboembolism-susceptibility variants in African-Americans.	Venous thromboembolism adjusted for sickle cell variant rs77121243-T	393 African American cases, 4,941 African American controls.	NR	9p21.2	C9orf82	rs73642995-T	0.0111	1E-6		3.916	[2.258-6.791]	Affymetrix, Illumina [14074516] (imputed)	N
789	chr9	26789939	26789940	rs1889899	19247474	Caporaso N	2009-02-27	PLoS One	Genome-wide and candidate gene association study of cigarette smoking behaviors.	Smoking behavior	2,617 European ancestry smokers, 1,725 European ancestry controls	NA	9p21.2	intergenic	rs1889899-?	0.37	6E-6	(EVNV)	1.26	[NR]	Illumina [~ 518000]	N
789	chr9	26849495	26849496	rs73431838	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9p21.2	NR	rs73431838-G	0.01045	3E-10	(TNC)	0.07734	NR unit increase	Illumina [1671387] (imputed)	N
790	chr9	26883045	26883046	rs151068302	30420678	Tasa T	2018-11-12	Eur J Hum Genet	Genetic variation in the Estonian population: pharmacogenomics study of adverse drug effects using electronic health records.	Adverse response to drug	16,226 European ancestry individuals	NA	9p21.2	CAAP1	rs151068302-T	0.08	1E-6	(Macrolides [J01FA])	1.73		Illumina [16500000] (imputed)	N
790	chr9	26895807	26895808	rs10967586	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	9p21.2	NR	rs10967586-G	NR	5E-7		1.0869565	[NR]	Illumina [7158791] (imputed)	N
790	chr9	26902592	26902593	rs10114508	33685280	Nishizawa D	2021-01-01	Mol Pain	Genome-wide association study identifies candidate loci associated with chronic pain and postherpetic neuralgia.	Postherpetic neuralgia	89 Japanese ancestry cases, 282 Japanese ancestry controls	NA	9p21.2	NR	rs10114508-?	NR	3E-6				Illumina [445723]	N
790	chr9	26932845	26932846	rs13299556	30796134	Soderholm M	2019-02-22	Neurology	Genome-wide association meta-analysis of functional outcome after ischemic stroke.	3-month functional outcome in ischaemic stroke (modified Rankin score)	6,165 European and unknown ancestry individuals	NA	9p21.2	PLAA	rs13299556-C	0.27	8E-7		1.21	[1.13-1.29]	Affymetrix, Illumina [~ 8500000] (imputed)	N
790	chr9	26935995	26935996	rs7045881	20185149	Athanasiu L	2010-02-23	J Psychiatr Res	Gene variants associated with schizophrenia in a Norwegian genome-wide study are replicated in a large European cohort.	Schizophrenia	201 European ancestry cases, 305 European ancestry controls	2,663 European ancestry cases, 13,780 European ancestry controls	9p21.2	PLAA	rs7045881-?	NR	2E-6		1.16	[NR]	Affymetrix [572888]	N
791	chr9	27002193	27002194	rs145997721	31324189	Kim W	2019-07-19	Respir Res	DSP variants may be associated with longitudinal change in quantitative emphysema.	Emphysema annual change measurement in smokers (adjusted lung density)	4,427 European ancestry individuals, 1,158 African American individuals	NA	9p21.2	IFT74	rs145997721-C	0.035	7E-6	(EA)	0.263	[0.15-0.38] unit decrease	Illumina [NR] (imputed)	N
791	chr9	27075714	27075715	rs1577330	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	9p21.2	NR	rs1577330-G	0.245380581810076	4E-6	(IGP61)	0.1746	[0.1-0.25] unit increase	Illumina [~ 2500000] (imputed)	N
791	chr9	27095071	27095072	rs2782434	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Bacteroides)	1,068 Japanese ancestry individuals	NA	9p21.2	intergenic	rs2782434-A	0.17	1E-6	(female)	0.0686	[0.041-0.096] unit decrease	Illumina [6380737] (imputed)	N
791	chr9	27115767	27115768	rs10738763	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (unclassified genus belonging to family Lachnospiraceae)	1,068 Japanese ancestry individuals	NA	9p21.2	TEK	rs10738763-C	0.09	3E-6	(male)	0.0992	[0.058-0.14] unit increase	Illumina [6380737] (imputed)	N
791	chr9	27126414	27126415	rs1334809	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	9p21.2	NR	rs1334809-G	0.884652631578947	8E-6	(IGP2)	0.2206	[0.12-0.32] unit increase	Illumina [~ 2500000] (imputed)	N
791	chr9	27126451	27126452	rs73643144	28078323	Raj T	2016-12-21	Neurol Genet	Genetic architecture of age-related cognitive decline in African Americans.	Cognitive decline (age-related)	3,964 African American ancestry individuals.	NA	9p21.2	TEK, ncRNA32	rs73643144-?		4E-7		0.007	unit decrease	Illumina [13900000] (imputed)	N
792	chr9	27135717	27135718	rs62544595	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	9p21.2	NR	rs62544595-G	NR	6E-6		1.1235955	[NR]	Illumina [7158791] (imputed)	N
792	chr9	27152307	27152308	rs664461	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	9p21.2	NR	rs664461-T	0.5749	2E-6	(Trans-16:1n-7, EA)	0.0024	[0.0014-0.0034] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
792	chr9	27152723	27152724	rs538679	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	9p21.2	NR	rs538679-A	0.4244	2E-6	(Trans-16:1n-7, EA)	0.0024	[0.0014-0.0034] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
792	chr9	27170620	27170621	rs601359	29594489	Apewokin S	2018-03-28	Support Care Cancer	Host genetic susceptibility to Clostridium difficile infections in patients undergoing autologous stem cell transplantation: a genome-wide association study.	Clostridium difficile infection in multiple myeloma	57 European ancestry cases, 589 European ancestry controls	NA	9p21.2	NR	rs601359-?		3E-6				Illumina [892589]	N
792	chr9	27179243	27179244	rs1322052	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	9p21.2	TEK	rs1322052-T	0.7041	2E-7		0.0337	[0.021-0.046] unit increase	NR [8041861] (imputed)	N
792	chr9	27183462	27183463	rs682632	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Angiopoietin-1 receptor levels	21,758 European ancestry individuals	9,173 individuals	9p21.2		rs682632-A	0.041	2E-114		0.4989	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
792	chr9	27191567	27191568	rs79250370	28369058	Folkersen L	2017-04-03	PLoS Genet	Mapping of 79 loci for 83 plasma protein biomarkers in cardiovascular disease.	Blood protein levels in cardiovascular risk	3,394 European ancestry individuals	2,639 individuals	9p21.2	TEK	rs79250370-G	0.94	1E-30		0.58	unit decrease	Illumina [5270624] (imputed)	N
792	chr9	27196493	27196494	rs511619	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TEK	5,362 Icelandic ancestry individuals	NA	9p21.2		rs511619-A	0.05649	6E-15		0.318471	[0.24-0.4] unit increase	Illumina [7506463] (imputed)	N
792	chr9	27197485	27197486	rs35030851	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Angiopoietin-1 receptor levels	21,758 European ancestry individuals	9,173 individuals	9p21.2		rs35030851-T	0.046	7E-300		0.7816	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
792	chr9	27197485	27197486	rs35030851	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9p21.2	TEK	rs35030851-T	0.047	1E-22	(Angiopoietin-1 receptor, soluble, TEK.3773.15.4)	0.56	[0.44-0.68] unit increase	Affymetrix [10572788] (imputed)	N
792	chr9	27197485	27197486	rs35030851	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	9p21.2	TEK, RNA5SP280, RP11-179D22.1	rs35030851-T	0.05070281	4E-21	(Angiopoietin-1 receptor, soluble)	0.9243	[0.74-1.11] unit increase	Affymetrix [509946]	N
792	chr9	27201550	27201551	rs117982767	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TEK	5,362 Icelandic ancestry individuals	NA	9p21.2		rs117982767-G	0.0198	4E-16		0.564173	[0.43-0.7] unit increase	Illumina [7506463] (imputed)	N
792	chr9	27209468	27209469	rs2273720	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	9p21.2	TEK	rs2273720-A	0.98015625	3E-11	(TEK, 3773_15_4)	0.590206	[0.42-0.76] unit decrease	Illumina [> 1000000] (imputed)	N
792	chr9	27209468	27209469	rs2273720	25552591	Lieb W	2014-12-31	Circ Cardiovasc Genet	Genome-wide association study for endothelial growth factors.	Endothelial growth factor levels	up to 3,574 European ancestry individuals	up to 3,184 European ancestry individuals	9p21.2	Tie-2	rs2273720-C	0.056	2E-65	(sTie-2)	0.265	[0.23-0.30] unit increase	Affymetrix [~ 2500000] (imputed)	N
792	chr9	27212062	27212063	rs118155010	35264221	Caron B	2022-03-09	Genome Med	Integrative genetic and immune cell analysis of plasma proteins in healthy donors identifies novel associations involving primary immune deficiency genes.	TIE 2 plasma levels	400 French ancestry individuals	NA	9p21.2		rs118155010-T	NR	3E-7		0.365	[0.25-0.48] ng/mL increase	Illumina [5201092] (imputed)	N
792	chr9	27216427	27216428	rs72614300	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Ischemic stroke (cardioembolic)	174 Indian ancestry cases, 2,154 Indian ancestry controls	NA	9p21.2		rs72614300-?	NR	6E-6		1.1461917	[1.08068655236886-1.21566746593971]	Illumina [up to 7827597] (imputed)	N
792	chr9	27241049	27241050	rs147486058	30954325	Kamboh MI	2019-03-11	Neurobiol Aging	Population-based genome-wide association study of cognitive decline in older adults free of dementia: identification of a novel locus for the attention domain.	Age-related cognitive decline (attention/processing speed) (slope of z-scores)	1,145 European ancestry individuals	NA	9p21.2	TEK, LINC00032	rs147486058-T	0.1	1E-6		0.34	unit increase	Illumina [5600000] (imputed)	N
792	chr9	27258184	27258185	rs997413	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	9p21.2		rs997413-?	NR	9E-9				NR [~ 8900000] (imputed)	N
793	chr9	27270015	27270016	rs7038427	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	9p21.2		rs7038427-?	NR	4E-9		0.012924	[0.0086-0.0173] unit decrease	Affymetrix [20259828] (imputed)	N
793	chr9	27308287	27308288	rs72721168	27611488	Almoguera B	2016-09-09	Am J Respir Crit Care Med	Identification of Four Novel Loci in Asthma in European American and African American Populations.	Asthma	819 African American non-allergic asthma cases, 2,218 African American allergic asthma cases 4,360 African American controls, 808 European American non-allergic asthma cases, 1,464 European American allergic asthma cases, 11,975 European American controls	NA	9p21.2	MOB3B, EQTN, TEK	rs72721168-?		7E-10	(EA)	0.602	[0.41-0.79] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
793	chr9	27308287	27308288	rs72721168	27611488	Almoguera B	2016-09-09	Am J Respir Crit Care Med	Identification of Four Novel Loci in Asthma in European American and African American Populations.	Asthma	819 African American non-allergic asthma cases, 2,218 African American allergic asthma cases 4,360 African American controls, 808 European American non-allergic asthma cases, 1,464 European American allergic asthma cases, 11,975 European American controls	NA	9p21.2	EQTN, TEK, MOB3B	rs72721168-?		2E-8	(EA, adjusted for allergy status)	0.927	[0.6-1.25] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
793	chr9	27308287	27308288	rs72721168	27611488	Almoguera B	2016-09-09	Am J Respir Crit Care Med	Identification of Four Novel Loci in Asthma in European American and African American Populations.	Adult asthma	337 African American allergic asthma cases, 321 African American non-allergic asthma cases, 1,367 African American controls, 466 European American allergic asthma cases, 626 European American non-allergic asthma cases, 7,878 European American controls	NA	9p21.2	EQTN, TEK, MOB3B	rs72721168-?	NR	3E-7	(EA)			Affymetrix, Illumina [NR] (imputed)	N
793	chr9	27308287	27308288	rs72721168	27611488	Almoguera B	2016-09-09	Am J Respir Crit Care Med	Identification of Four Novel Loci in Asthma in European American and African American Populations.	Adult asthma	337 African American allergic asthma cases, 321 African American non-allergic asthma cases, 1,367 African American controls, 466 European American allergic asthma cases, 626 European American non-allergic asthma cases, 7,878 European American controls	NA	9p21.2	EQTN, TEK, MOB3B	rs72721168-?	NR	2E-6	(EA, adjusted for allergy status)			Affymetrix, Illumina [NR] (imputed)	N
793	chr9	27309658	27309659	rs10967875	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	9p21.2	C9orf11	rs10967875-G	0.275	6E-6	(SBP )	0.03	[NR] mmHg increase	Illumina [899892]	N
793	chr9	27310292	27310293	rs185491840	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (executive function) x major depressive disorder interaction (2df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	9p21.2		rs185491840-A	0.99	2E-8				NR [NR] (imputed)	N
793	chr9	27313556	27313557	rs116882138	29559693	Zengini E	2018-03-20	Nat Genet	Genome-wide analyses using UK Biobank data provide insights into the genetic architecture of osteoarthritis.	Osteoarthritis of the hip or knee (hospital diagnosed)	6,586 European ancestry cases, 26,384 European ancestry controls	9,429 Icelandic ancestry cases, 199.421 Icelandic ancestry controls	9p21.2	NR	rs116882138-A	0.0173188	3E-6		1.2535	[1.1402-1.3779]	Affymetrix [16396089] (imputed)	N
793	chr9	27313556	27313557	rs116882138	29559693	Zengini E	2018-03-20	Nat Genet	Genome-wide analyses using UK Biobank data provide insights into the genetic architecture of osteoarthritis.	Osteoarthritis (hospital diagnosed)	10,083 European ancestry cases, 40,425 European ancestry controls	18,069 Icelandic ancestry cases, 246,293 Icelandic ancestry controls	9p21.2	NR	rs116882138-A	0.017027	2E-6		1.2029	[1.1146-1.2982]	Affymetrix [16468597] (imputed)	N
793	chr9	27382084	27382085	rs6475992	30787463	Escala-Garcia M	2019-02-21	Br J Cancer	Genome-wide association study of germline variants and breast cancer-specific mortality.	Breast cancer specific mortality in estrogen receptor negative breast cancer	2,125 European ancestry cases, 14,047 European ancestry controls	NA	9p21.2	NR	rs6475992-?	NR	2E-6		0.852871	[0.80-0.91]	Affymetrix, Illumina [~ 10400000] (imputed)	N
793	chr9	27390332	27390333	rs10967921	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9p21.2		rs10967921-?	NR	2E-9				NR [~ 8900000] (imputed)	N
794	chr9	27436083	27436084	rs147211831	34475377	Reus LM	2021-09-02	Transl Psychiatry	Genome-wide association study of frontotemporal dementia identifies a C9ORF72 haplotype with a median of 12-G4C2 repeats that predisposes to pathological repeat expansions.	Frontotemporal dementia	354 Dutch ancestry cases, 4,209 Dutch ancestry controls	281 Dutch ancestry cases, 618 Dutch ancestry controls	9p21.2		rs147211831-?	NR	5E-11		4.62	[4.17-5.07]	Illumina [39131578] (imputed)	N
794	chr9	27488091	27488092	rs17779457	23376709	Kerns SL	2013-01-31	J Urol	A 2-stage genome-wide association study to identify single nucleotide polymorphisms associated with development of urinary symptoms after radiotherapy for prostate cancer.	Urinary symptoms in response to radiotherapy in prostate cancer	346 European, African, Hispanic and Asian ancestry individuals	377 European, African, Hispanic and Asian ancestry individuals	9p21.2	IFNK, MOB3B	rs17779457-?	0.25	7E-7	(at 2-3 yrs)	2.4	[1.1-3.6] unit increase	Affymetrix [613496]	N
794	chr9	27490966	27490967	rs7046653	18615156	Liu C	2008-07-10	Mol Med	Genome-wide association scan identifies candidate polymorphisms associated with differential response to anti-TNF treatment in rheumatoid arthritis.	Response to TNF antagonist treatment	89 European ancestry cases	NA	9p21.2	IFNK	rs7046653-A	0.26	5E-7				Illumina [283348]	N
794	chr9	27491261	27491262	rs7019351	25442119	McLaughlin RL	2014-09-06	Neurobiol Aging	Second-generation Irish genome-wide association study for amyotrophic lateral sclerosis.	Amyotrophic lateral sclerosis	25 European ancestry C9orf72-positive cases, 1,179 European ancestry controls	NA	9p21.2	C9orf72	rs7019351-A	0.235	3E-15				Affymetrix, Illumina [1172473] (imputed)	N
794	chr9	27501725	27501726	rs143482172	28439531	Aslibekyan S	2017-03-08	J Nutr Intermed Metab	Genome- and CD4+ T-cell methylome-wide association study of circulating trimethylamine-N-oxide in the Genetics of Lipid Lowering Drugs and Diet Network (GOLDN).	Plasma trimethylamine N-oxide levels	626 European ancestry individuals	NA	9p21.2	MOB3B	rs143482172-?	NR	3E-7		1.57	[0.98-2.16] uM decrease	Affymetrix [9432837] (imputed)	N
794	chr9	27511283	27511284	rs2484314	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	9p21.2		rs2484314-?	NR	6E-11				NR [~ 8900000] (imputed)	N
795	chr9	27533983	27533984	rs10812610	20445134	Smith NL	2010-05-05	Circ Cardiovasc Genet	Association of genome-wide variation with the risk of incident heart failure in adults of European and African ancestry: a prospective meta-analysis from the cohorts for heart and aging research in genomic epidemiology (CHARGE) consortium.	Heart failure	20,926 European ancestry individuals, 2,895 African ancestry individuals	NA	9p21.2	MOBKL2B	rs10812610-?	0.50	5E-6	(EA)	1.14	[0.99-1.31]	Affymetrix, Illumina [2478304] (imputed)	N
795	chr9	27536396	27536397	rs2814707	19734901	van Es MA	2009-09-06	Nat Genet	Genome-wide association study identifies 19p13.3 (UNC13A) and 9p21.2 as susceptibility loci for sporadic amyotrophic lateral sclerosis.	Amyotrophic lateral sclerosis	2,323 European ancestry cases, 9,013 European ancestry controls	2,532 European ancestry cases, 5,940 European ancestry controls	9p21.2	IFNK, MOBKL2B, C9orf72	rs2814707-?	0.23	7E-9		1.22	[NR]	Illumina [292768]	N
795	chr9	27543280	27543281	rs3849942	30976013	Dekker AM	2019-04-11	Sci Rep	Exome array analysis of rare and low frequency variants in amyotrophic lateral sclerosis.	Amyotrophic lateral sclerosis	4,244 European ancestry cases, 3,106 European ancestry controls	NA	9p21.2	C9orf72	rs3849942-?	0.230	2E-6		1.21	[1.12 - 1.31]	Illumina [233331]	N
795	chr9	27543280	27543281	rs3849942	24256812	Fogh I	2013-11-20	Hum Mol Genet	A genome-wide association meta-analysis identifies a novel locus at 17q11.2 associated with sporadic amyotrophic lateral sclerosis.	Amyotrophic lateral sclerosis (sporadic)	6,100 European ancestry cases, 7,125 European ancestry controls	2,074 European ancestry cases, 2,556 European ancestry controls	9p21.2	intergenic	rs3849942-?	0.237	1E-8				Illumina [~ 7000000] (imputed)	N
795	chr9	27543280	27543281	rs3849942	22959728	Ahmeti KB	2012-09-05	Neurobiol Aging	Age of onset of amyotrophic lateral sclerosis is modulated by a locus on 1p34.1.	Amyotrophic lateral sclerosis	4,243 European ancestry cases, 5,112 European ancestry controls	NA	9p21.2	C9orf72	rs3849942-A	0.23	4E-7	(Joint)	1.21	[1.11-1.33]	Illumina [254145]	N
795	chr9	27543280	27543281	rs3849942	20801718	Laaksovirta H	2010-08-27	Lancet Neurol	Chromosome 9p21 in amyotrophic lateral sclerosis in Finland: a genome-wide association study.	Amyotrophic lateral sclerosis	405 European ancestry cases, 497 European ancestry controls	NA	9p21.2	IFNK, MOBKL2B, C9orf72	rs3849942-A	0.16	9E-11		2.16	[1.72-2.70]	Illumina [318167]	N
795	chr9	27543280	27543281	rs3849942	19734901	van Es MA	2009-09-06	Nat Genet	Genome-wide association study identifies 19p13.3 (UNC13A) and 9p21.2 as susceptibility loci for sporadic amyotrophic lateral sclerosis.	Amyotrophic lateral sclerosis	2,323 European ancestry cases, 9,013 European ancestry controls	2,532 European ancestry cases, 5,940 European ancestry controls	9p21.2	IFNK, MOBKL2B, C9orf72	rs3849942-?	0.23	1E-8		1.23	[NR]	Illumina [292768]	N
795	chr9	27543381	27543382	rs3849943	29566793	Nicolas A	2018-03-21	Neuron	Genome-wide Analyses Identify KIF5A as a Novel ALS Gene.	Amyotrophic lateral sclerosis	20,806 European ancestry cases, 59,804 European ancestry controls	4,159 cases, 18,650 controls	9p21.2	C9orf72	rs3849943-?	0.2362	4E-30	(EA)	1.1904762	[1.16-1.23]	Illumina [10031630] (imputed)	N
795	chr9	27543381	27543382	rs3849943	28931804	Benyamin B	2017-09-20	Nat Commun	Cross-ethnic meta-analysis identifies association of the GPX3-TNIP1 locus with amyotrophic lateral sclerosis.	Amyotrophic lateral sclerosis (sporadic)	1,234 Chinese ancestry cases, 2,850 Chinese ancestry controls, 12,577 European ancestry cases, 23,475 European ancestry controls	576 cases, 683 controls	9p21.2	c9orf72	rs3849943-?	NR	3E-23		0.0388	[0.031-0.046] unit increase	Illumina [at least 6613544] (imputed)	N
795	chr9	27543381	27543382	rs3849943	27455348	van Rheenen W	2016-07-25	Nat Genet	Genome-wide association analyses identify new risk variants and the genetic architecture of amyotrophic lateral sclerosis.	Amyotrophic lateral sclerosis	12,577 European ancestry cases, 23,475 European ancestry controls	2,579 European ancestry cases, 2,767 European ancestry controls	9p21.2	C9orf72	rs3849943-?	0.2233	4E-19		1.2245	[NR] (NL3 cohort)	Illumina [8697640] (imputed)	N
795	chr9	27543381	27543382	rs3849943	24931836	Diekstra FP	2014-06-27	Ann Neurol	C9orf72 and UNC13A are shared risk loci for amyotrophic lateral sclerosis and frontotemporal dementia: a genome-wide meta-analysis.	Amyotrophic lateral sclerosis	4,377 European ancestry cases, 13,017 European ancestry controls	NA	9p21.2	C9orf72	rs3849943-C	0.24	6E-10		1.22	[NR]	Illumina [~ 1400000] (imputed)	N
795	chr9	27561048	27561049	rs774359	19734901	van Es MA	2009-09-06	Nat Genet	Genome-wide association study identifies 19p13.3 (UNC13A) and 9p21.2 as susceptibility loci for sporadic amyotrophic lateral sclerosis.	Amyotrophic lateral sclerosis	2,323 European ancestry cases, 9,013 European ancestry controls	2,532 European ancestry cases, 5,940 European ancestry controls	9p21.2	NR	rs774359-?	0.25	3E-6		1.19	[NR]	Illumina [292768]	N
795	chr9	27563867	27563868	rs2453555	34873335	van Rheenen W	2021-12-06	Nat Genet	Common and rare variant association analyses in amyotrophic lateral sclerosis identify 15 risk loci with distinct genetic architectures and neuron-specific biology.	Amyotrophic lateral sclerosis	27,205 European ancestry cases, 110,881 European ancestry controls, 2,407 East Asian ancestry cases, 11,775 East Asian ancestry controls	NA			rs2453555-A	NR	1E-41		0.17	[0.15-0.19] unit increase	Illumina [10461755] (imputed)	N
795	chr9	27563867	27563868	rs2453555	34873335	van Rheenen W	2021-12-06	Nat Genet	Common and rare variant association analyses in amyotrophic lateral sclerosis identify 15 risk loci with distinct genetic architectures and neuron-specific biology.	Amyotrophic lateral sclerosis	27,205 European ancestry cases, 110,881 European ancestry controls	NA			rs2453555-A	0.248	1E-43		0.174	[0.15-0.2] unit increase	Illumina [10461755] (imputed)	N
795	chr9	27565935	27565936	rs1031153	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Cathepsin L1 levels	21,758 European ancestry individuals	9,173 individuals	9p21.2		rs1031153-T	0.26	4E-25		0.1076	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
795	chr9	27607972	27607973	rs117204439	34475377	Reus LM	2021-09-02	Transl Psychiatry	Genome-wide association study of frontotemporal dementia identifies a C9ORF72 haplotype with a median of 12-G4C2 repeats that predisposes to pathological repeat expansions.	Frontotemporal dementia	354 Dutch ancestry cases, 4,209 Dutch ancestry controls	281 Dutch ancestry cases, 618 Dutch ancestry controls	9p21.2		rs117204439-?	NR	6E-11		4.22	[3.79-4.65]	Illumina [39131578] (imputed)	N
795	chr9	27610656	27610657	rs2889829	23555189	Chen Z	2013-04-01	Neoplasia	Genome-wide association study identifies genetic determinants of urine PCA3 levels in men.	PCA3 expression level	1,371 European ancestry individuals	NA	9p21.2	C9orf72	rs2889829-G	0.64	2E-7		0.82	[0.75-0.89] unit increase	Illumina [3076666] (imputed)	N
795	chr9	27627073	27627074	rs10968017	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TMEM106A	5,363 Icelandic ancestry individuals	NA	9p21.2		rs10968017-G	0.2616	4E-14		0.162821	[0.12-0.21] unit decrease	Illumina [7506463] (imputed)	N
795	chr9	27628439	27628440	rs10968020	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SIAE	5,360 Icelandic ancestry individuals	NA	9p21.2		rs10968020-C	0.2344	1E-22		0.217128	[0.17-0.26] unit decrease	Illumina [7506463] (imputed)	N
795	chr9	27630561	27630562	rs12555345	21116278	Furney SJ	2010-11-30	Mol Psychiatry	Genome-wide association with MRI atrophy measures as a quantitative trait locus for Alzheimer's disease.	Total ventricular volume (Alzheimer's disease interaction)	424 European ancestry mild cognitive impairment cases, 236 European ancestry Alzheimer's disease cases, 279 European ancestry controls	NA	9p21.2	LOC392298	rs12555345-?	NR	5E-6		0.004	[NR] unit decrease	Illumina [478011]	N
796	chr9	27664431	27664432	rs4879677	26528553	Davenport ER	2015-11-03	PLoS One	Genome-Wide Association Studies of the Human Gut Microbiota.	Gut microbiome composition (summer and winter)	127 Hutterite individuals	NA	9p21.2	NR	rs4879677-?		3E-6	(genus_Megasphaera)	0.6397366	[0.38-0.9] unit decrease	Affymetrix [212153]	N
796	chr9	27777011	27777012	rs7874154	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	9p21.2		rs7874154-?	NR	3E-12				NR [~ 8900000] (imputed)	N
796	chr9	27780652	27780653	rs1854671	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	9p21.2	NR	rs1854671-?	NR	1E-12				Affymetrix [~ 8270000] (imputed)	N
797	chr9	27803736	27803737	rs3922980	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	9p21.2	NA	rs3922980-T	0.5021	8E-14		0.0127	[0.0094-0.016] unit decrease	NR [~ 27400000] (imputed)	N
797	chr9	27803736	27803737	rs3922980	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	9p21.2	NA	rs3922980-T	0.5021	8E-14		0.0127	[0.0094-0.016] unit decrease	NR [~ 27400000] (imputed)	N
797	chr9	27822530	27822531	rs1935354	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	9p21.2	LINGO2	rs1935354-T	0.51711	6E-13		0.010116	[0.0074-0.0129] unit decrease	Affymetrix [12370749]	N
797	chr9	27830540	27830541	rs62536931	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	9p21.2	NR	rs62536931-?	NR	5E-9				Affymetrix [~ 8270000] (imputed)	N
797	chr9	27839794	27839795	rs11789249	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	9p21.2	NR	rs11789249-A	0.301	1E-10		0.00764495	[0.0053-0.01] unit increase	NR [9732723] (imputed)	N
797	chr9	27842637	27842638	rs77362911	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Intake of total sugars	174,424 European ancestry individuals	NA	9p21.2	RP11-575I8.1	rs77362911-C	0.11	5E-6		1.2	[0.69-1.71] g/day increase	Affymetrix [10353649] (imputed)	N
797	chr9	27842702	27842703	rs10968144	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels	774 Chinese ancestry individuals	NA	9p21.2		rs10968144-?	NR	8E-6		0.18	[0.1-0.26] unit decrease	Affymetrix [NR] (imputed)	N
797	chr9	27852794	27852795	rs147699312	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Lean body mass	3,399 whole genome sequenced individuals, 11,801 European ancestry individuals	10,676 European ancestry individuals	9p21.2	RP11-575I8.1	rs147699312-T	0.0049	8E-6		0.4252	[0.24-0.61] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
797	chr9	27869509	27869510	rs2383733	30576415	Gilly A	2019-08-01	Bioinformatics	Very low-depth whole-genome sequencing in complex trait association studies.	Liver disease biomarker	1,225 Mylopotamos (founder/genetic isolate) individuals	NA	9p21.2	intergenic	rs2383733-?	NR	2E-7	(alanine aminotransferase)	0.4	[0.26-0.54] unit decrease	Illumina [14948665] (imputed)	N
797	chr9	27882652	27882653	rs7029145	20694011	Ferreira RC	2010-08-08	Nat Genet	Association of IFIH1 and other autoimmunity risk alleles with selective IgA deficiency.	Immunoglobulin A	430 European ancestry cases, 1,090 European ancestry controls	342 European ancestry cases, 886 European ancestry controls	9p21.2	IFNK, LINGO2	rs7029145-A	0.466	9E-6		1.29	[1.15-1.46]	Illumina [2057134] (imputed)	N
797	chr9	27894681	27894682	rs1316922	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	9p21.2	C9orf72	rs1316922-?	NR	5E-6	(xanthosine)	0.34290248	[0.2-0.49] unit increase	Affymetrix [at least 2500000] (imputed)	N
798	chr9	27953723	27953724	rs10119174	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Coffee consumption	335,909 European ancestry individuals	39,924 European ancestry individuals	9p21.2	LINGO2	rs10119174-G	0.4284	1E-7		0.0079	[0.005-0.0108] unit increase	Affymetrix [~ 7740000] (imputed)	N
798	chr9	28002522	28002523	rs10968265	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure	35,269 European ancestry cases, 63,451 European ancestry controls	NA	9p21.1	NR	rs10968265-A	0.664285	2E-6		1.0695187	[1.04-1.1]	Affymetrix [7791636] (imputed)	N
798	chr9	28010602	28010603	rs76692630	34387878	Kim KY	2021-08-13	Hepatology	Genome-wide association of individual vulnerability with alcoholic liver disease: A Korean Genome and Epidemiology Study.	Alcohol-associated liver disease in non drinkers	782 Korean ancestry cases, 18,058 Korean ancestry controls	NA	9p21.1		rs76692630-?	NR	4E-6		2.252	[1.596-3.179]	Affymetrix [7975321] (imputed)	N
798	chr9	28024193	28024194	rs72724928	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	9p21.1	NR	rs72724928-?	NR	9E-7	(AA)	1.5217	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
798	chr9	28026835	28026836	rs16912278	33235445	Lee YJ	2020-11-17	Int J Chron Obstruct Pulmon Dis	A Genome-Wide Association Study in Early COPD: Identification of One Major Susceptibility Loci.	Early chronic obstructive pulmonary disease in never smokers	38 Korean ancestry cases, 1,778 Korean ancestry controls	NA	9p21.1	LINGO2	rs16912278-?	NR	9E-6	(PS matching analysis)	3.25	NR	Affymetrix [345072]	N
799	chr9	28118944	28118945	rs151216272	32472697	Verma SS	2020-05-30	Clin Pharmacol Ther	Genome-wide association study of platelet reactivity and cardiovascular response in patients treated with clopidogrel: a study by the International Clopidogrel Pharmacogenomics Consortium (ICPC).	Platelet reactivity in response to clopidogrel treatment	2,592 European ancestry individuals	NA	9p21.1	LINGO2, LOC646700	rs151216272-A	0.988336	2E-7	(adjusted for CYP2C19*2)	0.635567	[0.4-0.87] unit decrease	Illumina [5009928] (imputed)	N
799	chr9	28165670	28165671	rs114334738	28498854	Liang J	2017-05-12	PLoS Genet	Single-trait and multi-trait genome-wide association analyses identify novel loci for blood pressure in African-ancestry populations.	Diastolic blood pressure	Up to 31,155 African individuals	Up to 4,187 African individuals, up to 14,016 Korean ancestry individuals, up to 23,914 European ancestry individuals, up to 12,278 Hispanic individuals	9p21.1	NR	rs114334738-?	NR	5E-7		1.2785	[0.78-1.78] unit increase	Affymetrix, Illumina [at least 30072738] (imputed)	N
799	chr9	28172216	28172217	rs10968363	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	9p21.1	NR	rs10968363-G	0.89	8E-7		1.03	[-0.9888-3.0488]	Affymetrix [at least 143006] (imputed)	N
799	chr9	28172435	28172436	rs10968364	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	9p21.1	NR	rs10968364-A	0.89	5E-7		1.02	[-1.0576-3.0976]	Affymetrix [at least 143006] (imputed)	N
799	chr9	28174771	28174772	rs80095685	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	9p21.1	NR	rs80095685-A	0.11	9E-7		1.0309278	[-0.98787-3.04973]	Affymetrix [at least 143006] (imputed)	N
799	chr9	28174918	28174919	rs113062598	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	9p21.1	NR	rs113062598-T	0.89	4E-6		1.04	[-1.0768-3.1568]	Affymetrix [at least 143006] (imputed)	N
799	chr9	28175676	28175677	rs79119373	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	9p21.1	NR	rs79119373-G	0.11	6E-7		1.0526316	[-0.98577-3.09103]	Affymetrix [at least 143006] (imputed)	N
799	chr9	28175950	28175951	rs76791169	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	9p21.1	NR	rs76791169-T	0.89	7E-7		1.08	[-0.9584-3.1184]	Affymetrix [at least 143006] (imputed)	N
799	chr9	28176867	28176868	rs1452348	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	9p21.1	NR	rs1452348-T	0.89	5E-7		1.07	[-0.9684-3.1084]	Affymetrix [at least 143006] (imputed)	N
799	chr9	28177608	28177609	rs12238130	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	9p21.1	NR	rs12238130-G	0.91	5E-7		1.01	[-1.0284-3.0484]	Affymetrix [at least 143006] (imputed)	N
800	chr9	28181084	28181085	rs1319535	30694715	Sakornsakolpat P	2019-01-29	Am J Respir Cell Mol Biol	Genome-Wide Association Analysis of Single Breath Diffusing Capacity of Carbon Monoxide (DLCO).	Diffusing capacity of carbon monoxide	2,584 European ancestry individuals with chronic obstructive pulmonary disease, 3,002 European ancestry healthy individuals, 343 African American individuals with chronic obstructive pulmonary disease, 1,006 African American healthy individuals	NA	9p21.1	LINGO2	rs1319535-T	0.62	4E-6	(African American)	0.18	0.1-0.26 unit increase	Illumina [NR] (imputed)	N
800	chr9	28181084	28181085	rs1319535	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	9p21.1	NR	rs1319535-C	0.34574886090058	4E-6	(IGP30)	0.1509	[0.087-0.215] unit increase	Illumina [~ 2500000] (imputed)	N
800	chr9	28181084	28181085	rs1319535	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	9p21.1	NR	rs1319535-C	0.345300509585377	9E-6	(IGP34)	0.1458	[0.081-0.21] unit decrease	Illumina [~ 2500000] (imputed)	N
800	chr9	28183298	28183299	rs12683152	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	9p21.1	NR	rs12683152-A	0.09	2E-6		1.0416667	[-1.01633-3.09967]	Affymetrix [at least 143006] (imputed)	N
800	chr9	28211486	28211487	rs117828793	29555444	Hamer MA	2018-03-16	J Invest Dermatol	Facial Wrinkles in Europeans: a Genome-Wide Association Study.	Facial wrinkles	3,513 north-western European ancestry individuals	599 north-western European ancestry individuals	9p21.1	NR	rs117828793-T	0.03	4E-6		4.61	[NR] z score decrease	Illumina [9009554] (imputed)	N
800	chr9	28227166	28227167	rs7357773	28736931	Rotroff DM	2017-07-24	Clin Pharmacol Ther	Genetic Variants in HSD17B3, SMAD3, and IPO11 Impact Circulating Lipids in Response to Fenofibrate in Individuals With Type 2 Diabetes.	Triglyceride change in response to fenofibrate in statin-treated type 2 diabetes	781 European ancestry individuals, 138 African American ancestry individuals, 345 unknown ancestry individuals		9p21.1	LINGO2	rs7357773-?	NR	4E-7	(AA)	0.114	unit increase	Affymetrix, Illumina [8129838] (imputed)	N
801	chr9	28359781	28359782	rs16912725	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	9p21.1	LINGO2	rs16912725-A	0.0040	2E-6	(IGF1 free )	0.04	[NR] ng/mL increase	Illumina [899892]	N
801	chr9	28359978	28359979	rs3842979	27490719	Bacelis J	2016-08-04	PLoS One	Literature-Informed Analysis of a Genome-Wide Association Study of Gestational Age in Norwegian Women and Children Suggests Involvement of Inflammatory Pathways.	Gestational age at birth in premature rupture of membrane-initiated deliveries (maternal effect)	336 Norwegian ancestry mothers	NA	9p21.1	NR	rs3842979-G		4E-6				NR [525577]	N
801	chr9	28395331	28395332	rs7851437	26379185	Garcia-Etxebarria K	2015-09-17	PLoS One	No Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity.	Mild influenza (H1N1) infection	107 European ancestry mild cases, 549 European ancestry population controls	NA	9p21.1	LINGO2	rs7851437-?	0.02695	9E-13		6.225	[5.66-6.79]	Affymetrix [547296]	N
801	chr9	28395331	28395332	rs7851437	26379185	Garcia-Etxebarria K	2015-09-17	PLoS One	No Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity.	Influenza A (H1N1) infection	49 European ancestry severe cases, 107 European ancestry mild cases, 549 European ancestry population controls	NA	9p21.1	LINGO2	rs7851437-?	0.02695	2E-10		4.879	[2.87-8.293]	Affymetrix [547296]	N
801	chr9	28402042	28402043	rs10968562	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	9p21.1	LINGO2	rs10968562-G	0.302	7E-6	(BMI z-score change )	0.03	[NR] SD/y increase	Illumina [899892]	N
801	chr9	28407491	28407492	rs7865532	24166409	Gelernter J	2014-01-01	Mol Psychiatry	Genome-wide association study of alcohol dependence:significant findings in African- and European-Americans including novel risk loci.	Alcohol dependence	4,629 African American individuals, 5,131 European ancestry individuals	801 African American individuals, 1,746 European ancestry individuals	9p21.1	LINGO2	rs7865532-?	NR	4E-7				Illumina [up to 10421983] (imputed)	N
801	chr9	28407491	28407492	rs7865532	24166409	Gelernter J	2014-01-01	Mol Psychiatry	Genome-wide association study of alcohol dependence:significant findings in African- and European-Americans including novel risk loci.	Alcohol dependence	4,629 African American individuals, 5,131 European ancestry individuals	801 African American individuals, 1,746 European ancestry individuals	9p21.1	LINGO2	rs7865532-?	0.439	2E-6	(AA)	0.0234	NR unit increase (AA, GCD Discovery)	Illumina [up to 10421983] (imputed)	N
801	chr9	28410682	28410683	rs1412234	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	9p21.1		rs1412234-C	NR	8E-18		0.0159	[0.012-0.02] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
801	chr9	28410682	28410683	rs1412234	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	9p21.1	NR	rs1412234-C	0.3192	4E-19		0.044	[0.034-0.054] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
801	chr9	28410682	28410683	rs1412234	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	9p21.1	NR	rs1412234-C	0.2864	4E-21		0.0397	[0.031-0.048] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
801	chr9	28410682	28410683	rs1412234	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	9p21.1	LINGO2	rs1412234-T	0.672866	4E-9		0.0120266	[0.008-0.016] unit increase	Affymetrix [NR] (imputed)	N
801	chr9	28410682	28410683	rs1412234	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	9p21.1	LINGO2	rs1412234-C	0.3229	2E-10		1.04	[1.03-1.06]	Affymetrix, Illumina [~ 27000000] (imputed)	N
801	chr9	28412077	28412078	rs2183824	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	9p21.1	NA	rs2183824-T	0.3135	2E-41		0.0234	[0.02-0.027] unit increase	NR [~ 27400000] (imputed)	N
801	chr9	28412077	28412078	rs2183824	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	9p21.1	LINGO2	rs2183824-T	0.32	2E-8		0.014	[0.0081-0.0199] unit increase	Illumina [6108953] (imputed)	N
801	chr9	28412274	28412275	rs7873025	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	9p21.1	NR	rs7873025-?	NR	2E-30				Affymetrix [~ 8270000] (imputed)	N
801	chr9	28412374	28412375	rs2183825	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	9p21.1	NA	rs2183825-T	0.6861	4E-15		0.0141	[0.011-0.018] unit decrease	NR [~ 27400000] (imputed)	N
801	chr9	28412374	28412375	rs2183825	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	316,772 European ancestry male individuals	NA	9p21.1	NR	rs2183825-T	0.6861	4E-15		0.0141	[0.011-0.018] unit decrease	NR [~ 27400000] (imputed)	N
801	chr9	28412374	28412375	rs2183825	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	9p21.1	NA	rs2183825-T	0.6865	4E-41		0.0233	[0.02-0.027] unit decrease	NR [~ 27400000] (imputed)	N
801	chr9	28413460	28413461	rs16912921	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	9p21.1	NA	rs16912921-A	0.3135	4E-41		0.0233	[0.02-0.027] unit increase	NR [~ 27400000] (imputed)	N
801	chr9	28414338	28414339	rs10968576	31754094	Pisanu C	2019-11-21	Transl Psychiatry	Evidence that genes involved in hedgehog signaling are associated with both bipolar disorder and high BMI.	Bipolar disorder or body mass index	20,352 European ancestry bipolar disorder cases, 31,358 European ancestry controls, 322,154 European ancestry individuals with BMI data.	NA	9p21.1	LINGO2	rs10968576-A	NR	3E-15		0.025	[0.019-0.031] unit decrease	Illumina [2013566] (imputed)	N
801	chr9	28414338	28414339	rs10968576	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	9p21.1	NR	rs10968576-A	NR	7E-21		0.025	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
801	chr9	28414338	28414339	rs10968576	29381148	Gong J	2017-12-21	Int J Obes (Lond)	Trans-ethnic analysis of metabochip data identifies two new loci associated with BMI.	Body mass index	35,606 African American individuals, 26,048 Hispanic/Latino individuals, 22,466 Asian or Native Hawaiian ancestry individuals, 17,859 European ancestry individuals, 535 Native American individuals	NA	9p21.1	intergenic	rs10968576-A		5E-8		0.0052	[0.0032-0.0072] unit decrease	Illumina [at least 200000]	N
801	chr9	28414338	28414339	rs10968576	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	High density lipoprotein cholesterol levels	up to 237,050 European ancestry individuals, up to 16,935 African ancestry individuals, up to 30,468 South Asian ancestry individuals, up to 8,287 East Asian ancestry individuals, 5,084 Hispanic individuals	up to 286,268 European and unknown ancestry individuals	9p21.1	LINGO2	rs10968576-G	NR	7E-9		0.01201642	[0.008-0.0161] unit decrease	Illumina [242289]	N
801	chr9	28414338	28414339	rs10968576	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	High density lipoprotein cholesterol levels	up to 237,050 European ancestry individuals	NA	9p21.1	NR	rs10968576-G	0.31	3E-8		0.018	unit decrease	Illumina [242289]	N
801	chr9	28414338	28414339	rs10968576	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	9p21.1	LINGO2	rs10968576-A	0.6952	2E-8	(women)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
801	chr9	28414338	28414339	rs10968576	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	9p21.1	LINGO2	rs10968576-A	0.6952	1E-11				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
801	chr9	28414338	28414339	rs10968576	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in non-smokers	77,279 European ancestry women, 47,280 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	9p21.1	LINGO2	rs10968576-A	0.6952	6E-7	(women)	0.0254	[0.015-0.035] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
801	chr9	28414338	28414339	rs10968576	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in non-smokers	77,279 European ancestry women, 47,280 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	9p21.1	LINGO2	rs10968576-A	0.6952	5E-10		0.0246	[0.017-0.032] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
801	chr9	28414338	28414339	rs10968576	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	9p21.1	LINGO2	rs10968576-A	0.6952	9E-10	(women)	0.0279	[0.019-0.037] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
801	chr9	28414338	28414339	rs10968576	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	9p21.1	LINGO2	rs10968576-A	0.6952	7E-6	(men)	0.0228	[0.013-0.033] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
801	chr9	28414338	28414339	rs10968576	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	9p21.1	LINGO2	rs10968576-A	0.6952	3E-13		0.0256	[0.019-0.032] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
801	chr9	28414338	28414339	rs10968576	26961502	Wood AR	2016-03-10	Diabetologia	Variants in the FTO and CDKAL1 loci have recessive effects on risk of obesity and type 2 diabetes, respectively.	Body mass index	29,925 British ancestry cases, 89,763 British ancestry controls	NA	9p21.1	LINGO2	rs10968576-G	NR	5E-8	(additive model)	0.024	[0.016-0.032] unit increase	NR [9288881] (imputed)	N
801	chr9	28414338	28414339	rs10968576	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	9p21.1	LINGO2	rs10968576-G	0.32	7E-14	(EA)	0.025	[0.018-0.031] kg/m2 increase	Affymetrix, Illumina [2550021]	N
801	chr9	28414338	28414339	rs10968576	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	9p21.1	LINGO2	rs10968576-G	0.32	5E-6	(EA, men)	0.02	[0.011-0.028] kg/m2 increase	Affymetrix, Illumina [2550021]	N
801	chr9	28414338	28414339	rs10968576	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	9p21.1	LINGO2	rs10968576-G	0.319	1E-11	(EA, women)	0.029	[0.02-0.037] kg/m2 increase	Affymetrix, Illumina [2550021]	N
801	chr9	28414338	28414339	rs10968576	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	9p21.1	LINGO2	rs10968576-G	0.315	2E-14		0.025	[0.018-0.031] kg/m2 increase	Affymetrix, Illumina [2550021]	N
801	chr9	28414338	28414339	rs10968576	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	9p21.1	LINGO2	rs10968576-A	0.6798	1E-8	(EA, women)	0.0268	[0.018-0.036] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
801	chr9	28414338	28414339	rs10968576	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	9p21.1	LINGO2	rs10968576-A	0.6798	1E-11	(EA)	0.0246	[0.018-0.032] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
801	chr9	28414338	28414339	rs10968576	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry  class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry class I obese individuals, 5,476 European ancestry class II obese individuals, 1,162 European ancestry class III obese individuals, up to 39,294 European ancestry controls	9p21.1	LINGO2	rs10968576-G	0.32	3E-8	(Obesity class I)	1.07	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
801	chr9	28414338	28414339	rs10968576	20935630	Speliotes EK	2010-10-10	Nat Genet	Association analyses of 249,796 individuals reveal 18 new loci associated with body mass index.	Body mass index	Up to 123,865 European ancestry individuals	Up to 125,931 European ancestry individuals	9p21.1	LRRN6C	rs10968576-G	0.31	3E-13		0.11	[0.07-0.15] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2800000] (imputed)	N
801	chr9	28414624	28414625	rs17770336	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	9p21.1		rs17770336-T	NR	3E-21		0.0201	[0.016-0.024] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
801	chr9	28414624	28414625	rs17770336	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	9p21.1		rs17770336-T	0.32	3E-14				NR [NR] (imputed)	N
801	chr9	28414624	28414625	rs17770336	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	High density lipoprotein cholesterol levels	392,965 European ancestry individuals	NA	9p21.1		rs17770336-T	0.32	8E-9		0.011	mmol/L decrease	NR [NR] (imputed)	N
801	chr9	28414624	28414625	rs17770336	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	9p21.1		rs17770336-T	0.32	2E-21		0.015	% increase	NR [NR] (imputed)	N
801	chr9	28414624	28414625	rs17770336	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		9p21.1	LINGO2	rs17770336-C	0.677521	3E-26		0.0155163	[0.013-0.018] unit decrease	Affymetrix [12370749]	N
801	chr9	28414624	28414625	rs17770336	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	9p21.1	NR	rs17770336-T	0.3239	8E-21		0.024723385	[0.02-0.03] unit increase	Affymetrix [10549349] (imputed)	N
801	chr9	28415511	28415512	rs10968577	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	9p21.1	NR	rs10968577-?	NR	6E-9		0.13113	[0.087-0.175] unit increase	Affymetrix [7794483] (imputed)	N
801	chr9	28415511	28415512	rs10968577	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	9p21.1	NR	rs10968577-?	NR	4E-6	(male)	0.12768	[0.073-0.182] unit increase	Affymetrix [7794483] (imputed)	N
801	chr9	28415511	28415512	rs10968577	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	9p21.1	LINGO2	rs10968577-T	0.3223	1E-11	(EA)	0.0315	[0.022-0.041] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
801	chr9	28415511	28415512	rs10968577	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	9p21.1	LINGO2	rs10968577-T	0.3195	9E-9	(men)	0.0389	[0.026-0.052] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
801	chr9	28415511	28415512	rs10968577	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	9p21.1	LINGO2	rs10968577-T	0.3184	3E-11		0.0302	[0.021-0.039] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
801	chr9	28415511	28415512	rs10968577	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	9p21.1	LINGO2	rs10968577-?	NR	8E-8	(men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
801	chr9	28415511	28415512	rs10968577	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	9p21.1	LINGO2	rs10968577-?	NR	8E-12				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
801	chr9	28415511	28415512	rs10968577	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	9p21.1	LINGO2	rs10968577-?	NR	7E-7	(EA, women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
801	chr9	28415511	28415512	rs10968577	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	9p21.1	LINGO2	rs10968577-?	NR	6E-7	(women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
801	chr9	28415511	28415512	rs10968577	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	9p21.1	LINGO2	rs10968577-?	NR	4E-12	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
801	chr9	28415511	28415512	rs10968577	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	9p21.1	LINGO2	rs10968577-T	0.3223	5E-13	(EA)	0.03	[0.022-0.038] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
801	chr9	28415511	28415512	rs10968577	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	9p21.1	LINGO2	rs10968577-T	0.3223	2E-7	(EA, women)	0.0276	[0.017-0.038] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
801	chr9	28415511	28415512	rs10968577	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	9p21.1	LINGO2	rs10968577-T	0.3223	1E-7	(EA, men)	0.0329	[0.021-0.045] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
801	chr9	28415511	28415512	rs10968577	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	9p21.1	LINGO2	rs10968577-T	0.3184	8E-7	(men)	0.0289	[0.018-0.04] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
801	chr9	28415511	28415512	rs10968577	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	9p21.1	LINGO2	rs10968577-T	0.3184	4E-12		0.0278	[0.02-0.036] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
801	chr9	28415511	28415512	rs10968577	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	9p21.1	LINGO2	rs10968577-T	0.3184	2E-7	(women)	0.0267	[0.017-0.037] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
801	chr9	28415511	28415512	rs10968577	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	9p21.1	NR	rs10968577-T	0.317299425644751	1E-16		0.02500833	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
801	chr9	28425514	28425515	rs1412239	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	9p21.1		rs1412239-?	NR	2E-32				NR [~ 8900000] (imputed)	N
801	chr9	28425514	28425515	rs1412239	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry  class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry class I obese individuals, 5,476 European ancestry class II obese individuals, 1,162 European ancestry class III obese individuals, up to 39,294 European ancestry controls	9p21.1	LINGO2	rs1412239-G	0.32	2E-10	(Obesity class II)	1.11	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
801	chr9	28433952	28433953	rs62555197	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	9p21.1	LINGO2	rs62555197-A	0.805905	4E-8		0.0146591	[0.0094-0.0199] unit increase	Affymetrix [NR] (imputed)	N
802	chr9	28474483	28474484	rs34343198	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	9p21.1	NR	rs34343198-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
802	chr9	28518910	28518911	rs56942085	30823506	Hong EP	2019-02-25	J Clin Med	Genomic Variations in Susceptibility to Intracranial Aneurysm in the Korean Population.	Intracranial aneurysm	250 Korean ancestry cases, 296 Korean ancestry controls	NA	9p21.1	LINGO2	rs56942085-A	0.03	4E-8		6.11	[3.2-11.64]	Affymetrix [508192]	N
803	chr9	28575099	28575100	rs58271251	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	9p21.1	NR	rs58271251-A	NR	2E-11		6.694	z score decrease	Affymetrix [10847151] (imputed)	N
803	chr9	28576105	28576106	rs1402796	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	9p21.1	intergenic	rs1402796-T	0.62827	5E-14		7.53	z score increase	Illumina [18485882] (imputed)	N
803	chr9	28577293	28577294	rs58662928	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	9p21.1	NR	rs58662928-T	NR	3E-9		5.945	z score increase	Affymetrix [10847151] (imputed)	N
803	chr9	28578947	28578948	rs17776015	32314116	Zhang H	2020-04-20	Osteoporos Int	Pleiotropic loci underlying bone mineral density and bone size identified by a bivariate genome-wide association analysis.	Hip bone size	3,267 European ancestry individuals, 1,619 Chinese ancestry individuals, 843 African American individuals, 446 Hispanic individuals	NA	9p21.1	NR	rs17776015-C	NR	1E-10		0.13	[0.091-0.169] unit increase	Affymetrix, Illumina [NR] (imputed)	N
803	chr9	28578947	28578948	rs17776015	32314116	Zhang H	2020-04-20	Osteoporos Int	Pleiotropic loci underlying bone mineral density and bone size identified by a bivariate genome-wide association analysis.	Bone mineral density (hip) and hip bone size	3,267 European ancestry individuals, 1,619 Chinese ancestry individuals, 843 African American individuals, 446 Hispanic individuals	NA	9p21.1	NR	rs17776015-C	NR	5E-10				Affymetrix, Illumina [NR] (imputed)	N
803	chr9	28587993	28587994	rs2891316	24096698	De Vivo I	2013-10-06	Hum Genet	Genome-wide association study of endometrial cancer in E2C2.	Endometrial cancer	up to 2,695 European ancestry cases, up to 2,777 European ancestry controls	up to 3,235 cases, up to 12,059 controls	9p21.1	LINGO2	rs2891316-?	NR	9E-6	(European, All type I)			Illumina [873935]	N
803	chr9	28600141	28600142	rs12348435	24962325	Kapoor M	2014-06-11	Drug Alcohol Depend	Genome-wide survival analysis of age at onset of alcohol dependence in extended high-risk COGA families.	Alcohol dependence (age at onset)	685 European ancestry cases, 1,103 European ancestry controls from 118 families	NA	9p21.1	NR	rs12348435-C	0.04	2E-6		1.59	[1.39-1.79]	Illumina [4058415] (imputed)	N
803	chr9	28604267	28604268	rs12344656	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	9p21.1	NR	rs12344656-A	NR	3E-13		7.28	z score decrease	Affymetrix [10847151] (imputed)	N
803	chr9	28607876	28607877	rs10812851	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	9p21.1	LINGO2	rs10812851-T	NR	8E-9		0.010045	[0.0066-0.0135] unit decrease	Affymetrix [18485882] (imputed)	N
803	chr9	28607876	28607877	rs10812851	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	9p21.1	NR	rs10812851-C	0.367126886428815	1E-11		0.006486263	[0.0046-0.0084] unit decrease	NR [NR]	N
803	chr9	28607876	28607877	rs10812851	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	9p21.1		rs10812851-?	NR	6E-11				NR [~ 8900000] (imputed)	N
803	chr9	28607876	28607877	rs10812851	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	9p21.1	LINGO2	rs10812851-T	0.369058	3E-9		5.92	z score increase	NR [10847151] (imputed)	N
803	chr9	28631594	28631595	rs10968692	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	9p21.1	NR	rs10968692-T	0.213764309275106	5E-8		0.010028154	[0.0064-0.0136] unit decrease	NR [NR]	N
803	chr9	28667292	28667293	rs13291753	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	9p21.1	LINGO2	rs13291753-A	NR	4E-8		0.0096513	[0.0062-0.0131] unit decrease	Affymetrix [18485882] (imputed)	N
803	chr9	28682260	28682261	rs6476086	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	9p21.1	intergenic	rs6476086-A	0.7226600000000001	2E-11		6.745	z score increase	Illumina [18485882] (imputed)	N
803	chr9	28685166	28685167	rs10968719	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	9p21.1	NR	rs10968719-T	NR	5E-8		5.457	z score increase	Affymetrix [10847151] (imputed)	N
804	chr9	28708882	28708883	rs62545082	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	9p21.1	NR	rs62545082-C	NR	2E-8		5.641	z score increase	Affymetrix [10847151] (imputed)	N
804	chr9	28717245	28717246	rs1438479	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	9p21.1	NR	rs1438479-A	NR	2E-12		7.032	z score decrease	Affymetrix [10847151] (imputed)	N
804	chr9	28717572	28717573	rs7033345	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	9p21.1	NR	rs7033345-C	NR	8E-9		0.01547	[0.01-0.021] unit decrease	Affymetrix [10847151] (imputed)	N
804	chr9	28717572	28717573	rs7033345	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	9p21.1	LINGO2	rs7033345-T	0.27906	2E-9		5.97	z score increase	NR [10847151] (imputed)	N
804	chr9	28752483	28752484	rs10968749	25944848	Athanasiu L	2015-05-05	J Psychopharmacol	Genome-wide association study identifies common variants associated with pharmacokinetics of psychotropic drugs.	Pharmacokinetics of olanzapine in severe mental disorder (concentration dose ratio)	Up to 290 European ancestry cases	NA	9p21.1	LINGO2	rs10968749-G	NR	2E-7		0.8345	[NR] unit decrease	Affymetrix [686595]	N
804	chr9	28753981	28753982	rs10968750	31055733	Nazarian A	2019-05-05	Geroscience	Genetic heterogeneity of Alzheimer's disease in subjects with and without hypertension.	Alzheimer's disease in hypertension-negative individuals	796 European ancestry cases, 4,010 European ancestry controls	NA	9p21.1	LINGO2	rs10968750-T	0.941	2E-6		2.633	[1.77-3.5]	NR [~ 2000000] (imputed)	N
804	chr9	28772699	28772700	rs824248	24390345	Williams AL	2013-12-25	Nature	Sequence variants in SLC16A11 are a common risk factor for type 2 diabetes in Mexico.	Type 2 diabetes	3,848 Mexican and other Latin American ancestry cases, 4,366 Mexican and other Latin American ancestry controls	896 Mexican American cases, 832 Mexican American controls, 2,768 East Asian ancestry cases, 2,880 East Asian ancestry controls, 1,082 South Asian ancestry cases, 1,105 South Asian ancestry controls, 1,874 European ancestry cases, 1,333 European ancestry controls, 2,127 African American cases, 2,103 African American controls, 698 Native Hawaiian ancestry cases, 579 Native Hawaiian ancestry controls, 2,009 Singaporean ancestry cases, 1959 Singaporean ancestry controls	9p21.1	LINGO2	rs824248-T	NR	8E-6		1.18	[1.10-1.26]	Illumina [9200000] (imputed)	N
804	chr9	28790404	28790405	rs531114053	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of linoleic acid to total fatty acids	115,006 European ancestry individuals	NA	9p21.1		rs531114053-A	0.99136	6E-9		0.12739	[0.085-0.17] unit decrease	NR [11722792] (imputed)	N
804	chr9	28809923	28809924	rs62548332	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9p21.1	NR	rs62548332-G	0.01045	4E-11	(DPP7)	0.191	NR unit increase	Illumina [1671387] (imputed)	N
804	chr9	28817765	28817766	rs77571729	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Spatial processing	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	9p21.1	LINGO2	rs77571729-C	NR	9E-6		0.5272559	[0.29-0.77] unit decrease	Illumina [> 6200000] (imputed)	N
805	chr9	28891816	28891817	rs10812882	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	1,505 Ashkenazi Jewish founder cases, 2,553 Ashkenazi Jewish founder controls	NA	9p21.1	LINGO2, MIR873	rs10812882-T	NR	1E-6		1.3	[NR]	Illumina [up to 9792010] (imputed)	N
805	chr9	28941458	28941459	rs13299788	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	9p21.1	NA	rs13299788-C	0.8492	3E-10		0.0148	[0.01-0.019] unit increase	NR [~ 27400000] (imputed)	N
805	chr9	28963288	28963289	rs35735220	31212010	Cabana-Dominguez J	2019-06-15	Prog Neuropsychopharmacol Biol Psychiatry	Genome-wide association meta-analysis of cocaine dependence: Shared genetics with comorbid conditions.	Cocaine dependence	2,085 European ancestry cases, 4,293 European ancestry controls	NA	9p21.1	intergenic	rs35735220-T	NR	7E-6		0.3091	[0.17-0.44] unit decrease	Illumina [9290362] (imputed)	N
806	chr9	29041439	29041440	rs144623872	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9p21.1	NR	rs144623872-G	0.0122	1E-8	(AMACR)	0.05527	NR unit increase	Illumina [1671387] (imputed)	N
806	chr9	29048439	29048440	rs1832877	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure	35,269 European ancestry cases, 63,451 European ancestry controls	NA	9p21.1	NR	rs1832877-G	0.888364	1E-7		1.0775862	[1.05-1.11]	Affymetrix [7791636] (imputed)	N
806	chr9	29067933	29067934	rs1418351	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	9p21.1	LINGO2	rs1418351-C	0.3482	1E-8		0.014195468	[0.0093-0.0191] unit decrease	Affymetrix [11515109] (imputed)	N
806	chr9	29089436	29089437	rs13288108	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	9p21.1	NR	rs13288108-C	0.8218	5E-8		0.0274	[0.018-0.037] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
807	chr9	29106804	29106805	rs145756094	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Granulocyte-colony stimulating factor levels	7,904 Finnish ancestry individuals	NA	9p21.1	NR	rs145756094-G		6E-7		0.7408	[0.45-1.03] SD units increase	NR [10700000] (imputed)	N
807	chr9	29148448	29148449	rs12683261	30251476	Lopez-Mejias R	2018-09-24	Arthritis Rheumatol	A genome-wide association study identifies a 3'UTR genetic variant of RARB associated with carotid intima-media thickness in rheumatoid arthritis.	Carotid plaques in rheumatoid arthritis	1,355 Spanish ancestry individuals	NA	9p21.1	MIR873	rs12683261-G	0.969	5E-6		4.0	[2.22-7.14]	Illumina [63089444] (imputed)	N
807	chr9	29153468	29153469	rs7870900	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	9p21.1		rs7870900-?	NR	2E-10				NR [~ 8900000] (imputed)	N
807	chr9	29161217	29161218	rs10123671	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	1,505 Ashkenazi Jewish founder cases, 2,553 Ashkenazi Jewish founder controls	NA	9p21.1	NR	rs10123671-G	NR	8E-6		1.3513513	[NR]	Illumina [up to 9792010] (imputed)	N
807	chr9	29163785	29163786	rs10757813	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	9p21.1	RP11-373A6.1	rs10757813-A	0.1696	6E-6		0.0388	[0.022-0.056] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
807	chr9	29190177	29190178	rs148382232	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in diabetes mellitus	153 Korean ancestry cases, 5,161 Korean ancestry controls	NA	9p21.1		rs148382232-A	0.0484	5E-6		2.432	[1.658-3.568]	Affymetrix [7975321] (imputed)	N
808	chr9	29270223	29270224	rs10757826	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	9p21.1	NA	rs10757826-A	0.3349	5E-9		0.0102	[0.0069-0.0135] unit increase	NR [~ 27400000] (imputed)	N
808	chr9	29292964	29292965	rs80028017	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	9p21.1	NA	rs80028017-T		2E-23		0.122249	[0.098-0.146] unit decrease	Illumina [13288253] (imputed)	N
808	chr9	29299828	29299829	rs148340644	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	9p21.1	Intergenic	rs148340644-T	1.0	4E-6	(AA)	0.543	unit increase	Illumina [NR] (imputed)	N
808	chr9	29335387	29335388	rs368245336	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	7,894 Sub-Saharan African ancestry individuals	NA	9p21.1		rs368245336-G	0.987066	9E-6		0.0372706	[0.021-0.054] unit decrease	Illumina [13900000] (imputed)	N
809	chr9	29363264	29363265	rs2150864	25628336	Hromatka BS	2015-01-26	Hum Mol Genet	Genetic variants associated with motion sickness point to roles for inner ear development, neurological processes and glucose homeostasis.	Motion sickness	80,494 European ancestry individuals	NA	9p21.1	LINGO2	rs2150864-G	0.348	6E-15		0.042	[0.032-0.053] unit increase	Illumina [7428049] (imputed)	N
809	chr9	29364326	29364327	rs10969106	27028160	Sherva R	2016-03-30	JAMA Psychiatry	Genome-wide Association Study of Cannabis Dependence Severity, Novel Risk Variants, and Shared Genetic Risks.	Cannabis dependence symptom count	Up to 6,000 African American ancestry individuals, 8,754 European ancestry individuals	At least 1,893 European ancestry individuals	9p21.1	Intergenic	rs10969106-G	0.97	2E-7	(EA)			Illumina [NR] (imputed)	N
809	chr9	29364484	29364485	rs12344220	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,963 Sub-Saharan African ancestry females	NA	9p21.1		rs12344220-G	0.96555	2E-6		0.0333964	[0.019-0.047] unit decrease	Illumina [13900000] (imputed)	N
809	chr9	29372500	29372501	rs10156578	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Migraine	53,109 European ancestry cases, 230,876 European ancestry controls	NA	9p21.1	LINGO2	rs10156578-?	NR	2E-8		1.0449321	[1.03-1.06]	Illumina [13763073] (imputed)	N
809	chr9	29398624	29398625	rs10813066	27694959	Bonder MJ	2016-10-03	Nat Genet	The effect of host genetics on the gut microbiome.	Gut microbiota (bacterial taxa)	984 European ancestry individuals	530 European ancestry individuals	9p21.1	LINGO2	rs10813066-C	NR	2E-9	(k__Bacteria|p__Firmicutes|c__Clostridia|o__Clostridiales|f__Lachnospiraceae|g__Blautia)	5.975028	NR Z-score increase	Illumina [8100000] (imputed)	N
809	chr9	29414370	29414371	rs10969143	27694959	Bonder MJ	2016-10-03	Nat Genet	The effect of host genetics on the gut microbiome.	Gut microbiota (bacterial taxa)	984 European ancestry individuals	530 European ancestry individuals	9p21.1	LINGO2	rs10969143-A	NR	3E-8	(k__Bacteria|p__Firmicutes|c__Clostridia|o__Clostridiales|f__Lachnospiraceae|g__Blautia|s__Ruminococcus_obeum)	5.531443	NR Z-score increase	Illumina [8100000] (imputed)	N
809	chr9	29419801	29419802	rs10813080	34620984	Skuladottir AT	2021-10-07	Commun Biol	A genome-wide meta-analysis uncovers six sequence variants conferring risk of vertigo.	Vertigo	48,072 European ancestry cases, 894,541 European ancestry controls	NA	9p21.1		rs10813080-C	NR	1E-6		1.04394		Affymetrix, Illumina [62056310] (imputed)	N
809	chr9	29483184	29483185	rs376758705	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	7,894 Sub-Saharan African ancestry individuals	NA	9p21.1		rs376758705-C	0.989232	7E-6		0.0411842	[0.023-0.059] unit decrease	Illumina [13900000] (imputed)	N
810	chr9	29511759	29511760	rs139927989	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9p21.1	NR	rs139927989-T	0.01568	3E-10	(USP5)	0.1514	NR unit increase	Illumina [1671387] (imputed)	N
810	chr9	29536617	29536618	rs640850	25514360	Hansel NN	2014-12-16	Am J Respir Cell Mol Biol	Genome-Wide Association Study Identification of Novel Loci Associated with Airway Responsiveness in Chronic Obstructive Pulmonary Disease.	Airway responsiveness in chronic obstructive pulmonary disease	Up to 4,108 European American cases	NA	9p21.1	intergenic	rs640850-G	0.2469	6E-7	(O'Connor Slope)	0.039	[NR] unit increase	Illumina [546355]	N
810	chr9	29545874	29545875	rs13290799	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	9p21.1	LINGO2	rs13290799-A	0.129	4E-6	(Diet fat )	0.03	[NR] %energy increase	Illumina [899892]	N
810	chr9	29568685	29568686	rs10491678	25514360	Hansel NN	2014-12-16	Am J Respir Cell Mol Biol	Genome-Wide Association Study Identification of Novel Loci Associated with Airway Responsiveness in Chronic Obstructive Pulmonary Disease.	Airway responsiveness in chronic obstructive pulmonary disease	Up to 4,108 European American cases	NA	9p21.1	intergenic	rs10491678-C	0.362	5E-9	(Continuous PC20)	0.052	[NR] unit increase	Illumina [546355]	N
810	chr9	29568835	29568836	rs12551941	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Alanine aminotransferase levels in low alcohol consumption	8,716 individuals	NA	9p21.1	NR	rs12551941-?	NR	4E-6		0.1347	[0.078-0.191] unit decrease	Illumina [~ 7800000] (imputed)	N
810	chr9	29571865	29571866	rs148808311	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9p21.1	NR	rs148808311-C	0.01045	3E-10	(CTSC)	0.03135	NR unit increase	Illumina [1671387] (imputed)	N
810	chr9	29599000	29599001	rs10757893	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	9p21.1	NR	rs10757893-A	0.575224	9E-9		0.0137428	[0.0086-0.0188] unit increase	Affymetrix [16585745] (imputed)	N
811	chr9	29632141	29632142	rs601162	24925725	Chung SA	2014-06-12	J Am Soc Nephrol	Lupus nephritis susceptibility loci in women with systemic lupus erythematosus.	Lupus nephritis in systemic lupus erythematosus	588 European ancestry cases, 1,412 European ancestry controls	NA	9p21.1	intergenic	rs601162-A	NR	1E-6	(Recessive)	3.11	[1.99-4.88]	Affymetrix, Illumina [1621689] (imputed)	N
811	chr9	29634624	29634625	rs10969298	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	9p21.1	NR	rs10969298-?	NR	6E-9				Affymetrix [~ 8270000] (imputed)	N
811	chr9	29708928	29708929	rs60131931	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	9p21.1	NR	rs60131931-?	NR	1E-11				Affymetrix [~ 8270000] (imputed)	N
811	chr9	29708928	29708929	rs60131931	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	9p21.1		rs60131931-?	NR	1E-11				NR [~ 8900000] (imputed)	N
811	chr9	29716654	29716655	rs12238336	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	9p21.1	NA	rs12238336-T	0.3828	4E-12		0.0121	[0.0088-0.0154] unit decrease	NR [~ 27400000] (imputed)	N
811	chr9	29717278	29717279	rs10969334	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		9p21.1	LINGO2	rs10969334-C	0.606447	7E-10		0.00867165	[0.0059-0.0114] unit increase	Affymetrix [12370749]	N
811	chr9	29740027	29740028	rs10119117	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	9p21.1		rs10119117-C	0.481	1E-10		0.008	[0.006-0.01] unit decrease	NR [NR] (imputed)	N
811	chr9	29747487	29747488	rs10969352	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	9p21.1	NR	rs10969352-A	0.5	2E-8		0.01434674	[0.0094-0.0193] unit increase	NR [~ 10000000] (imputed)	N
811	chr9	29750166	29750167	rs1932133	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	9p21.1	NA	rs1932133-A	0.5846	7E-12		0.0112	[0.0081-0.0143] unit increase	NR [~ 27400000] (imputed)	N
812	chr9	29783988	29783989	rs10969375	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	9p21.1	LOC401497, LINGO2	rs10969375-G	0.14	6E-6	(HDL )	0.02	[NR] mg/dL increase	Illumina [899892]	N
812	chr9	29791862	29791863	rs2184513	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	9p21.1	NR	rs2184513-C	0.336	2E-11		0.00764122	[0.0054-0.0099] unit increase	NR [9732723] (imputed)	N
812	chr9	29796378	29796379	rs371569093	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	7,894 Sub-Saharan African ancestry individuals	NA	9p21.1		rs371569093-A	0.987408	9E-6		0.0373368	[0.021-0.054] unit decrease	Illumina [13900000] (imputed)	N
813	chr9	29964181	29964182	rs78404095	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Chickenpox	107,769 European ancestry cases, 15,982 European ancestry controls	NA	9p21.1	NR	rs78404095-?	NR	6E-6		0.3908	[0.21-0.57] unit decrease	Illumina [at least 560000] (imputed)	N
813	chr9	30001314	30001315	rs191386225	27611488	Almoguera B	2016-09-09	Am J Respir Crit Care Med	Identification of Four Novel Loci in Asthma in European American and African American Populations.	Asthma	819 African American non-allergic asthma cases, 2,218 African American allergic asthma cases 4,360 African American controls, 808 European American non-allergic asthma cases, 1,464 European American allergic asthma cases, 11,975 European American controls	NA	9p21.1	MIR873	rs191386225-?		3E-6	(AA)	0.369	[0.27-0.46] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
814	chr9	30071249	30071250	rs9408192	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Systolic blood pressure (long-term average)	5,304 African American individuals, 13,137 European ancestry individuals, 1,317 Hispanic individuals, 1,439 admixed individuals, 703 Chinese ancestry individuals	6,500 African American individuals, 2,451 European ancestry individuals, 2,869 Hispanic individuals	9p21.1	NR	rs9408192-T	0.8986	7E-7		1.1753	[0.71-1.64] mmHg increase	Affymetrix, Illumina [NR] (imputed)	N
814	chr9	30086230	30086231	rs186881009	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage Migration Inhibitory Factor levels	3,494 Finnish ancestry individuals	NA	9p21.1	NR	rs186881009-C	NR	8E-6		0.4027	[0.23-0.58] SD units increase	NR [10700000] (imputed)	N
814	chr9	30102301	30102302	rs2519076	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure	35,269 European ancestry cases, 63,451 European ancestry controls	NA	9p21.1	NR	rs2519076-G	0.331502	7E-6		1.0649627	[1.04-1.09]	Affymetrix [7791636] (imputed)	N
815	chr9	30183552	30183553	rs2800342	29855589	Chernus J	2018-05-31	Sci Rep	GWAS reveals loci associated with velopharyngeal dysfunction.	Velopharyngeal dysfunction	54 Hispanic or Latin American and unknown ancestry cases, 922 Hispanic or Latin American and unknown ancestry controls	NA	9p21.1	NR	rs2800342-?	NR	5E-8		0.12544882	[NR] unit decrease	Illumina [at least 269494] (imputed)	N
815	chr9	30189852	30189853	rs376830903	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HBE1	5,354 Icelandic ancestry individuals	NA	9p21.1		rs376830903-A	0.01149	8E-18		0.148062	[0.11-0.18] unit increase	Illumina [7506463] (imputed)	N
816	chr9	30284142	30284143	rs7854037	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Total intracranial volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	9p21.1	NR	rs7854037-?		9E-6				Illumina [4322238] (imputed)	N
816	chr9	30290700	30290701	rs76906599	29855589	Chernus J	2018-05-31	Sci Rep	GWAS reveals loci associated with velopharyngeal dysfunction.	Velopharyngeal dysfunction	54 Hispanic or Latin American and unknown ancestry cases, 922 Hispanic or Latin American and unknown ancestry controls	NA	9p21.1	NR	rs76906599-?	NR	4E-6		0.103448756	[NR] unit decrease	Illumina [at least 269494] (imputed)	N
816	chr9	30331302	30331303	rs186927647	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	9p21.1		rs186927647-G	NR	4E-7	(resting duration)	0.3237	[0.2-0.45] unit decrease	Affymetrix [7141204] (imputed)	N
816	chr9	30393315	30393316	rs76811787	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	9p21.1	LINC01242	rs76811787-A	0.9956	7E-6		0.2792	[0.16-0.4] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
816	chr9	30393315	30393316	rs76811787	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	9p21.1	LINC01242	rs76811787-A	0.9956	7E-6		0.2792	[0.16-0.4] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
816	chr9	30403442	30403443	rs78527136	29855589	Chernus J	2018-05-31	Sci Rep	GWAS reveals loci associated with velopharyngeal dysfunction.	Velopharyngeal dysfunction	54 Hispanic or Latin American and unknown ancestry cases, 922 Hispanic or Latin American and unknown ancestry controls	NA	9p21.1	NR	rs78527136-?	NR	4E-6		0.101646245	[NR] unit decrease	Illumina [at least 269494] (imputed)	N
816	chr9	30408703	30408704	rs113367152	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-hip ratio	1,254 whole genome sequenced European ancestry individuals, 3,071 whole genome sequenced individuals, 29,723 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,053 Mylopotamos (founder/genetic isolate) individuals, 879 Pomak (founder/genetic isolate) individuals	206,053 European ancestry individuals	9p21.1	LINC01242	rs113367152-A	0.9945	9E-6		0.3632	[0.2-0.52] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
818	chr9	30567013	30567014	rs10813300	31791832	Koks S	2019-11-12	J Arthroplasty	The Genetic Variations Associated With Time to Aseptic Loosening After Total Joint Arthroplasty.	Aseptic loosening in total joint arthroplasty	97 cases, 289 controls	NA	9p21.1	Intergenic	rs10813300-C	0.44	2E-6		2.27	[NR]	Illumina [up to 600000]	N
819	chr9	30697378	30697379	rs10738852	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	9p21.1	NR	rs10738852-?	NR	2E-6				Affymetrix [NR]	N
819	chr9	30751219	30751220	rs10969853	24962325	Kapoor M	2014-06-11	Drug Alcohol Depend	Genome-wide survival analysis of age at onset of alcohol dependence in extended high-risk COGA families.	Alcohol dependence (age at onset)	685 European ancestry cases, 1,103 European ancestry controls from 118 families	NA	9p21.1	NR	rs10969853-T	0.94	5E-6		1.61	[1.41-1.81]	Illumina [4058415] (imputed)	N
820	chr9	30823760	30823761	rs16916303	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	9p21.1		rs16916303-?	NR	3E-10				NR [~ 8900000] (imputed)	N
820	chr9	30859763	30859764	rs138591003	32349335	Lundback V	2020-04-27	Cells	Genome-Wide Association Study of Diabetogenic Adipose Morphology in the GENetics of Adipocyte Lipolysis (GENiAL) Cohort.	Adipose morphology	894 individuals	NA	9p21.1	NR	rs138591003-A	0.0108	8E-6		178.0	[-255--100] unit decrease	NR [9714326] (imputed)	N
820	chr9	30866807	30866808	rs10969913	31095341	Kerns SL	2019-05-16	J Natl Cancer Inst	Radiogenomics Consortium Genome-Wide Association Study Meta-analysis of Late Toxicity after Prostate Cancer Radiotherapy.	Toxicity response to radiotherapy in prostate cancer (decreased urine stream) (time to event)	3,470 European ancestry individuals	NR	9p21.1	NR	rs10969913-G	0.05	3E-10		3.92	[2.57-6.00]	Affymetrix, Illumina [~ 6000000] (imputed)	N
820	chr9	30872218	30872219	rs75880256	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Monokine induced by gamma interferon levels	3,685 Finnish ancestry individuals	NA	9p21.1	NR	rs75880256-G	NR	4E-6		0.2703	[0.16-0.39] SD units increase	NR [10700000] (imputed)	N
820	chr9	30879674	30879675	rs10813374	24811271	Kennedy RB	2014-05-09	Immunogenetics	Genome-wide SNP associations with rubella-specific cytokine responses in measles-mumps-rubella vaccine recipients.	Immune response to measles-mumps-rubella vaccine	883 European ancestry individuals	NA	9p21.1	LOC100288436, ACO1	rs10813374-?		3E-8	(IFN gamma response)			Illumina [NR]	N
820	chr9	30889006	30889007	rs78589086	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	9p21.1	Intergenic	rs78589086-C	0.999	2E-6	(AA)	0.355	unit increase	Illumina [NR] (imputed)	N
820	chr9	30898160	30898161	rs189970609	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	9p21.1	Intergenic	rs189970609-C	0.999	3E-7	(AA)	0.372	unit increase	Illumina [NR] (imputed)	N
820	chr9	30902949	30902950	rs139088314	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	9p21.1	Intergenic	rs139088314-T	0.999	3E-7	(AA)	0.366	unit increase	Illumina [NR] (imputed)	N
820	chr9	30904470	30904471	rs138746541	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	9p21.1	Intergenic	rs138746541-A	0.999	3E-7	(AA)	0.365	unit increase	Illumina [NR] (imputed)	N
820	chr9	30905404	30905405	rs139528199	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	9p21.1	Intergenic	rs139528199-C	0.999	4E-7	(AA)	0.362	unit increase	Illumina [NR] (imputed)	N
820	chr9	30907218	30907219	rs10969963	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	9p21.1		rs10969963-G	0.75	1E-8		0.007	[0.005-0.009] unit increase	NR [NR] (imputed)	N
820	chr9	30907834	30907835	rs149450639	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	9p21.1	Intergenic	rs149450639-C	0.999	5E-7	(AA)	0.348	unit increase	Illumina [NR] (imputed)	N
820	chr9	30910158	30910159	rs80324951	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	9p21.1	Intergenic	rs80324951-C	0.999	5E-7	(AA)	0.346	unit increase	Illumina [NR] (imputed)	N
820	chr9	30912420	30912421	rs147368481	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	9p21.1	Intergenic	rs147368481-A	0.999	6E-7	(AA)	0.344	unit increase	Illumina [NR] (imputed)	N
820	chr9	30912924	30912925	rs76695314	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	9p21.1	Intergenic	rs76695314-T	0.999	6E-7	(AA)	0.343	unit increase	Illumina [NR] (imputed)	N
820	chr9	30915158	30915159	rs149406381	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	9p21.1	Intergenic	rs149406381-A	0.998	4E-6	(AA)	0.278	unit increase	Illumina [NR] (imputed)	N
820	chr9	30916629	30916630	rs17785414	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	9p21.1	Intergenic	rs17785414-A	0.999	8E-7	(AA)	0.337	unit increase	Illumina [NR] (imputed)	N
820	chr9	30920637	30920638	rs17785420	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	9p21.1	Intergenic	rs17785420-G	0.999	9E-7	(AA)	0.334	unit increase	Illumina [NR] (imputed)	N
820	chr9	30926852	30926853	rs139048350	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	9p21.1	Intergenic	rs139048350-A	0.999	9E-7	(AA)	0.331	unit increase	Illumina [NR] (imputed)	N
820	chr9	30928038	30928039	rs138549889	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	9p21.1	Intergenic	rs138549889-T	0.999	9E-7	(AA)	0.331	unit increase	Illumina [NR] (imputed)	N
821	chr9	30934828	30934829	rs145444918	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	9p21.1	Intergenic	rs145444918-A	0.999	1E-6	(AA)	0.328	unit increase	Illumina [NR] (imputed)	N
821	chr9	30942561	30942562	rs117289048	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Alanine aminotransferase levels in low alcohol consumption	8,716 individuals	NA	9p21.1	NR	rs117289048-?	NR	2E-6		0.1631	[0.096-0.23] unit increase	Illumina [~ 7800000] (imputed)	N
821	chr9	30953075	30953076	rs184557780	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	9p21.1	Intergenic	rs184557780-T	0.999	1E-6	(AA)	0.32	unit increase	Illumina [NR] (imputed)	N
821	chr9	30953850	30953851	rs75214736	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	9p21.1	Intergenic	rs75214736-C	0.999	1E-6	(AA)	0.32	unit increase	Illumina [NR] (imputed)	N
821	chr9	30955023	30955024	rs151101851	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	9p21.1	Intergenic	rs151101851-G	0.999	1E-6	(AA)	0.32	unit increase	Illumina [NR] (imputed)	N
821	chr9	30957904	30957905	rs151321188	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	9p21.1	Intergenic	rs151321188-G	0.999	1E-6	(AA)	0.32	unit increase	Illumina [NR] (imputed)	N
821	chr9	30966394	30966395	rs143976741	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	9p21.1	Intergenic	rs143976741-G	0.999	1E-6	(AA)	0.32	unit increase	Illumina [NR] (imputed)	N
821	chr9	30971368	30971369	rs74838144	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	9p21.1	Intergenic	rs74838144-A	0.999	1E-6	(AA)	0.32	unit increase	Illumina [NR] (imputed)	N
821	chr9	30972354	30972355	rs184676284	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	9p21.1	Intergenic	rs184676284-A	0.999	1E-6	(AA)	0.32	unit increase	Illumina [NR] (imputed)	N
821	chr9	30973106	30973107	rs141510725	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	9p21.1	Intergenic	rs141510725-G	0.999	1E-6	(AA)	0.32	unit increase	Illumina [NR] (imputed)	N
821	chr9	30973697	30973698	rs138792676	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	9p21.1	Intergenic	rs138792676-A	0.999	1E-6	(AA)	0.32	unit increase	Illumina [NR] (imputed)	N
821	chr9	30975565	30975566	rs145505122	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	9p21.1	Intergenic	rs145505122-C	0.999	2E-6	(AA)	0.314	unit increase	Illumina [NR] (imputed)	N
821	chr9	30975636	30975637	rs148861184	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	9p21.1	Intergenic	rs148861184-A	0.999	2E-6	(AA)	0.314	unit increase	Illumina [NR] (imputed)	N
821	chr9	30975831	30975832	rs77213524	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	9p21.1	Intergenic	rs77213524-T	0.999	2E-6	(AA)	0.314	unit increase	Illumina [NR] (imputed)	N
821	chr9	30976705	30976706	rs191378958	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	9p21.1	Intergenic	rs191378958-G	0.999	2E-6	(AA)	0.402	unit increase	Illumina [NR] (imputed)	N
821	chr9	31030916	31030917	rs17720922	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	9p21.1	NA	rs17720922-T	0.1875	4E-9		0.0128	[0.0085-0.0171] unit increase	NR [~ 27400000] (imputed)	N
821	chr9	31057420	31057421	rs10115292	32624584	Yousaf A	2020-07-05	Transl Psychiatry	Quantitative genome-wide association study of six phenotypic subdomains identifies novel genome-wide significant variants in autism spectrum disorder.	Autism spectrum disorders (peer interaction)	2,509 individuals	NA	9p21.1	intergenic	rs10115292-?	NR	2E-8		0.388	NR unit increase	Illumina [6900500] (imputed)	N
822	chr9	31124451	31124452	rs34653192	30718901	Howard DM	2019-02-04	Nat Neurosci	Genome-wide meta-analysis of depression identifies 102 independent variants and highlights the importance of the prefrontal brain regions.	Depression	118,811 European ancestry cases, 327,427 European ancestry controls, 127,552 cases, 233,763 controls	414,055 European ancestry cases, 892,299 European ancestry controls	9p21.1	NR	rs34653192-G	0.6804	3E-16		1.0193679	[1.02-1.02]	NR [8098588] (imputed)	N
822	chr9	31147839	31147840	rs1335159	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	9p21.1	DDX58	rs1335159-?	NR	8E-6	(guanosine monophosphate)	0.7534929	[0.42-1.08] unit decrease	Affymetrix [at least 2500000] (imputed)	N
822	chr9	31160242	31160243	rs13296641	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	9p21.1		rs13296641-?	NR	9E-11		0.0204	unit decrease	NR [NR]	N
822	chr9	31193132	31193133	rs76321240	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9p21.1	NR	rs76321240-C	0.01045	7E-9	(TYMP)	0.6439	NR unit increase	Illumina [1671387] (imputed)	N
823	chr9	31201620	31201621	rs61090372	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	9p21.1		rs61090372-T	NR	4E-9		0.0158	[0.011-0.021] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
823	chr9	31234704	31234705	rs13299293	32959083	Adewuyi EO	2020-09-21	Hum Genet	Genetic analysis of endometriosis and depression identifies shared loci and implicates causal links with gastric mucosa abnormality.	Endometriosis or depression (pleiotropy)	17,054 endometriosis cases, 170,756 European ancestry depression cases, 191,858 controls, 329,443 European ancestry controls	NA	9p21.1	NR	rs13299293-A		2E-8		0.0241789	[0.016-0.033] unit decrease	NR [6694342]	N
823	chr9	31272393	31272394	rs7044014	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	9p21.1	DDX58	rs7044014-?	NR	6E-6	(guanosine monophosphate)	0.92598516	[0.53-1.33] unit decrease	Affymetrix [at least 2500000] (imputed)	N
823	chr9	31309713	31309714	rs180766527	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	CTACK levels	3,631 Finnish ancestry individuals	NA	9p21.1	NR	rs180766527-C	NR	5E-6		0.6395	[0.36-0.91] SD units decrease	NR [10700000] (imputed)	N
824	chr9	31372582	31372583	rs10970305	25628336	Hromatka BS	2015-01-26	Hum Mol Genet	Genetic variants associated with motion sickness point to roles for inner ear development, neurological processes and glucose homeostasis.	Motion sickness	80,494 European ancestry individuals	NA	9p21.1	ACO1	rs10970305-C	0.505	1E-27		0.057	[0.047-0.068] unit decrease	Illumina [7428049] (imputed)	N
824	chr9	31394024	31394025	rs7857709	26105758	Adhikari K	2015-06-24	Nat Commun	A genome-wide association study identifies multiple loci for variation in human ear morphology.	Lobe size	4,919 Latin American individuals	NA	9p21.1	NR	rs7857709-?	NR	8E-7	(FDR adjusted)			Illumina [671038]	N
824	chr9	31419914	31419915	rs10435736	23934736	Yu B	2013-08-11	Genet Epidemiol	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels  (X-11787)	1,260 African American individuals	NA	9p21.1	LOC138412	rs10435736-C		4E-7		0.05	[0.03-0.07] unit increase	Affymetrix [~ 2500000] (imputed)	N
824	chr9	31444664	31444665	rs113799681	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9p21.1	NR	rs113799681-G	0.01742	2E-8	(LONP1)	0.1449	NR unit increase	Illumina [1671387] (imputed)	N
824	chr9	31450665	31450666	rs148359873	24159190	Seppala I	2013-10-24	Eur Heart J	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Symmetrical dimethylarginine levels	5110 European ancestry individuals	NA	9p21.1	NR	rs148359873-T	0.03	1E-6		0.361	[0.21-0.51] unit increase	Affymetrix, Illumina [10085758] (imputed)	N
824	chr9	31450665	31450666	rs148359873	24159190	Seppala I	2013-10-24	Eur Heart J	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Serum dimethylarginine levels (asymmetric/symetric ratio)	5110 European ancestry individuals	NA	9p21.1	NR	rs148359873-T	0.03	5E-6		0.342	[0.2-0.49] unit decrease	Affymetrix, Illumina [10085758] (imputed)	N
825	chr9	31479004	31479005	rs12345625	25763902	Draaken M	2015-03-12	PLoS Genet	Genome-wide association study and meta-analysis identify ISL1 as genome-wide significant susceptibility gene for bladder exstrophy.	Classic bladder exstrophy	208 European ancestry cases, 1,703 European ancestry controls	NA	9p21.1	NR	rs12345625-T	0.03	7E-6		2.72	[1.76-4.20]	Illumina [7261187] (imputed)	N
825	chr9	31488485	31488486	rs150980669	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	9p21.1	NR	rs150980669-?	NR	7E-9				Illumina [7760689] (imputed)	N
825	chr9	31492926	31492927	rs16917043	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	9p21.1	NR	rs16917043-?	NR	1E-17				Affymetrix [NR]	N
825	chr9	31499712	31499713	rs78496360	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	9p21.1	Intergenic	rs78496360-A	NR	5E-7	(between families)	5.026	unit decrease	Affymetrix [up to 15107142] (imputed)	N
825	chr9	31504672	31504673	rs188654671	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	CTACK levels	3,631 Finnish ancestry individuals	NA	9p21.1	NR	rs188654671-C	NR	3E-7		0.7017	[0.43-0.97] SD units decrease	NR [10700000] (imputed)	N
825	chr9	31532075	31532076	rs184749887	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	9p21.1	NR	rs184749887-?	NR	9E-7		1.14176	[0.69-1.6] unit increase	NR [13958389] (imputed)	N
825	chr9	31546471	31546472	rs4576506	22005930	Hollingworth P	2011-10-18	Mol Psychiatry	Genome-wide association study of Alzheimer's disease with psychotic symptoms.	Psychosis and Alzheimer's disease	1,039 European ancestry cases with psychosis, 5,659 European ancestry controls, 260 European, African American and Native American ancestry cases with psychosis from 264 families	NA	9p21.1	RP11-291J9.2	rs4576506-?	0.06	1E-6		1.66	[NR]	Illumina [1847262] (imputed)	N
826	chr9	31633337	31633338	rs183005588	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	CTACK levels	3,631 Finnish ancestry individuals	NA	9p21.1	NR	rs183005588-G	NR	2E-6		0.621	[0.37-0.88] SD units increase	NR [10700000] (imputed)	N
826	chr9	31665124	31665125	rs11794666	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (90 or 130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	9p21.1	intergenic	rs11794666-?	NR	5E-6		0.123	[0.052-0.194] unit increase	Illumina [at least 13000000] (imputed)	N
826	chr9	31682739	31682740	rs146309472	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	9p21.1	HMGB3P23	rs146309472-A	0.9954	8E-6		0.2723	[0.15-0.39] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
828	chr9	31910763	31910764	rs10970595	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	9p21.1	ACO1	rs10970595-T	0.1165	2E-9		0.018772665	[0.013-0.025] unit decrease	Affymetrix [11514654] (imputed)	N
828	chr9	31953066	31953067	rs62550808	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	CAG-110 abundance in stool	5,959 Finnish ancestry individuals	NA	9p21.1		rs62550808-C	0.0245555	3E-8		0.236514	[0.15-0.32] unit decrease	Illumina [7980478] (imputed)	N
828	chr9	31960707	31960708	rs76476250	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	9p21.1	NR	rs76476250-?	NR	3E-6		0.007842	[0.0045-0.0111] unit decrease	Affymetrix [805426] (imputed)	N
829	chr9	31995831	31995832	rs10813691	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	9p21.1		rs10813691-G	0.892	1E-9		0.012	[0.0081-0.0159] unit increase	NR [NR] (imputed)	N
829	chr9	31996109	31996110	rs1490320	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	9p21.1		rs1490320-?	NR	7E-9				NR [~ 8900000] (imputed)	N
829	chr9	32063613	32063614	rs191353623	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	9p21.1	NR	rs191353623-?	NR	7E-6		0.0075605	[0.0043-0.0109] unit decrease	Affymetrix [805426] (imputed)	N
831	chr9	32280051	32280052	rs192138285	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Lean body mass	3,399 whole genome sequenced individuals, 11,801 European ancestry individuals	10,676 European ancestry individuals	9p21.1	RNA5SP281	rs192138285-T	0.9983	6E-6		0.8872	[0.5-1.27] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
831	chr9	32292316	32292317	rs1331226	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Word spelling	3,399 European ancestry individuals	NA	9p21.1	Intergenic	rs1331226-G	0.895751	2E-6		0.225684	[0.13-0.32] unit decrease	Illumina [6969139] (imputed)	N
832	chr9	32410849	32410850	rs4442231	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Lateral ventricle temporal horn volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	9p21.1	ACO1	rs4442231-?		9E-6				Illumina [4322238] (imputed)	N
832	chr9	32418352	32418353	rs41305321	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Red blood cell count	445,305 European ancestry individuals	NA	9p21.1		rs41305321-?	NR	2E-14		0.202269	[0.15-0.26] unit increase	NR [9800000] (imputed)	N
832	chr9	32418352	32418353	rs41305321	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Hemoglobin levels	445,373 European ancestry individuals	NA	9p21.1		rs41305321-?	NR	1E-14		0.220643	[0.16-0.28] unit increase	NR [9800000] (imputed)	N
832	chr9	32418352	32418353	rs41305321	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	9p21.1	ACO1	rs41305321-T	0.00128499999999998	6E-11		0.2009844	[0.14-0.26] unit increase	Affymetrix [93095623] (imputed)	N
832	chr9	32418352	32418353	rs41305321	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	9p21.1	ACO1	rs41305321-T	0.00128499999999998	2E-13		0.22711337	[0.17-0.29] unit increase	Affymetrix [93095623] (imputed)	N
832	chr9	32418352	32418353	rs41305321	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	9p21.1	ACO1	rs41305321-T	0.00128499999999998	1E-13		0.22887874	[0.17-0.29] unit increase	Affymetrix [93095623] (imputed)	N
832	chr9	32418472	32418473	rs61753543	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Red blood cell count	445,305 European ancestry individuals	NA	9p21.1		rs61753543-?	NR	5E-10		0.164831	[0.11-0.22] unit decrease	NR [9800000] (imputed)	N
832	chr9	32418472	32418473	rs61753543	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Hemoglobin levels	445,373 European ancestry individuals	NA	9p21.1		rs61753543-?	NR	3E-9		0.156915	[0.1-0.21] unit decrease	NR [9800000] (imputed)	N
832	chr9	32422689	32422690	rs7032871	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	9p21.1	NR	rs7032871-T	0.278857772929653	5E-6	(IGP27)	0.1579	[0.09-0.226] unit increase	Illumina [~ 2500000] (imputed)	N
832	chr9	32425675	32425676	rs3780474	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	9p21.1	ACO1	rs3780474-G	0.359913	1E-18		0.020315766	[0.016-0.025] unit increase	Affymetrix [93095623] (imputed)	N
832	chr9	32425675	32425676	rs3780474	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	9p21.1	ACO1	rs3780474-G	0.35992	6E-19		0.020491008	[0.016-0.025] unit increase	Affymetrix [93095623] (imputed)	N
832	chr9	32428110	32428111	rs113234132	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	9p21.1	ACO1	rs113234132-C	0.424978	1E-21		0.021671133	[0.017-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
832	chr9	32431930	32431931	rs10970975	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	9p21.1		rs10970975-G	NR	9E-14		0.0133	[0.0098-0.0168] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
832	chr9	32431930	32431931	rs10970975	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	9p21.1		rs10970975-?	NR	6E-21				NR [~ 8900000] (imputed)	N
832	chr9	32432973	32432974	rs4878497	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Inflammatory skin disease	2,079 European ancestry atopic dermatitis cases, 4,212 European ancestry psoriasis cases, 11,899 European ancestry controls	NA	9p21.1	ACO1	rs4878497-?	NR	4E-9	(Psoriasis)			Affymetrix, Illumina [~ 5200000]	N
832	chr9	32433525	32433526	rs10970976	22561531	Wan YI	2012-05-05	Thorax	Genome-wide association study to identify genetic determinants of severe asthma.	Asthma	933 European ancestry cases, 3,346 European ancestry controls	231 European ancestry cases, 1,345 European ancestry controls	9p21.1	ACO1	rs10970976-?	NR	4E-6		1.28	[1.16-1.43]	Illumina [6103628] (imputed)	N
832	chr9	32436902	32436903	rs77802813	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	9p21.1	DDX58	rs77802813-A	0.8396875	8E-6	(DDX58, 12382_2_3)	0.15166162	[0.085-0.218] unit decrease	Illumina [> 1000000] (imputed)	N
832	chr9	32450186	32450187	rs12985	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	9p21.1		rs12985-C	NR	1E-15		0.0134	[0.01-0.017] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
832	chr9	32450186	32450187	rs12985	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	9p21.1		rs12985-C	NR	2E-16		0.0141	[0.011-0.017] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
832	chr9	32450186	32450187	rs12985	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9p21.1	NR	rs12985-C	0.38196	5E-23				Affymetrix, Illumina [24653286] (imputed)	N
832	chr9	32450186	32450187	rs12985	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	9p21.1	NR	rs12985-C	0.374778	4E-23		0.018929	[0.015-0.023] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
832	chr9	32450186	32450187	rs12985	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9p21.1	NR	rs12985-C	0.38043	4E-27				Affymetrix, Illumina [24558453] (imputed)	N
832	chr9	32450186	32450187	rs12985	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	9p21.1	NR	rs12985-C	0.374645	1E-26		0.020426	[0.017-0.024] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
832	chr9	32455261	32455262	rs7045087	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9p21.1	NR	rs7045087-C	0.258248	8E-27				Affymetrix, Illumina [24332387] (imputed)	N
832	chr9	32455261	32455262	rs7045087	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	9p21.1	ACO1, DDX58	rs7045087-C		3E-11		0.02	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
832	chr9	32455261	32455262	rs7045087	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	9p21.1	ACO1, DDX58	rs7045087-C	0.298	1E-11		0.02630657	[0.019-0.034] unit decrease	Affymetrix [~ 2500000] (imputed)	N
832	chr9	32455261	32455262	rs7045087	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	9p21.1	ACO1, DDX58	rs7045087-C	0.298	2E-9		0.02338299	[0.016-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
832	chr9	32455261	32455262	rs7045087	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	9p21.1	ACO1, DDX58	rs7045087-C	0.298	3E-10		0.02440385	[0.017-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
832	chr9	32455673	32455674	rs1133071	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	9p21.1	NR	rs1133071-G	0.298393	3E-27		0.021843	[0.018-0.026] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
832	chr9	32455673	32455674	rs1133071	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	9p21.1	NR	rs1133071-G	0.3001	3E-6	(EA)	0.0335	[0.02-0.047] unit decrease	Illumina [~ 11800000] (imputed)	N
832	chr9	32458052	32458053	rs10738889	26312577	Tan LJ	2015-08-27	J Clin Endocrinol Metab	Bivariate Genome-Wide Association Study Implicates ATP6V1G1 as a Novel Pleiotropic Locus Underlying Osteoporosis and Age at Menarche.	Bone mineral density (spine) and age at menarche	826 Han Chinese ancestry females	1,728 European ancestry females, 709 African American females, 408 Hispanic/Latin American females	9p21.1	DDX58	rs10738889-?		2E-6	(East Asian)			Affymetrix [702413]	N
832	chr9	32468874	32468875	rs17289402	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on self-rated math ability (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	9p21.1		rs17289402-?	NR	4E-8				NR [NR]	N
832	chr9	32468874	32468875	rs17289402	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on Townsend deprivation index (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	9p21.1		rs17289402-?	NR	3E-8				NR [NR]	N
832	chr9	32470482	32470483	rs73479419	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on cognitive performance (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	9p21.1		rs73479419-?	NR	5E-8				NR [NR]	N
832	chr9	32474376	32474377	rs73479427	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on highest math class (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	9p21.1		rs73479427-?	NR	5E-8				NR [NR]	N
833	chr9	32523736	32523737	rs11795343	33385400	Patrick MT	2020-12-29	J Invest Dermatol	Causal relationship and shared genetic loci between psoriasis and type 2 diabetes through trans-disease meta-analysis.	Psoriasis or type 2 diabetes (trans-disease meta-analysis)	11,024 European ancestry psoriasis cases, 74,124 European ancestry diabetes cases, 840,342 European ancestry controls	NA		DDX58	rs11795343-T	NR	1E-10		1.07	NR	NR [8016731] (imputed)	N
833	chr9	32523736	32523737	rs11795343	26626624	Stuart PE	2015-11-28	Am J Hum Genet	Genome-wide Association Analysis of Psoriatic Arthritis and Cutaneous Psoriasis Reveals Differences in Their Genetic Architecture.	Psoriasis vulgaris	4,007 European ancestry cases, 4,934 European ancestry controls	up to 9,075 European ancestry cases, up to European ancestry 12,726 controls		DDX58	rs11795343-T	NR	6E-6		1.101	NR	Illumina [up to 11532644] (imputed)	N
833	chr9	32523736	32523737	rs11795343	25903422	Yin X	2015-04-23	Nat Commun	Genome-wide meta-analysis identifies multiple novel associations and ethnic heterogeneity of psoriasis susceptibility.	Psoriasis	3,496 European ancestry cases, 5,186 European ancestry controls, 1,588 Chinese ancestry cases, 3,546 Chinese ancestry controls	5,134 European ancestry cases, 5,633 European ancestry controls, 5,151 Chinese ancestry cases, 5,152 Chinese ancestry controls		DDX58	rs11795343-T	0.585	4E-7		1.15	[1.09-1.22]	Illumina [up to 4778154] (imputed)	N
833	chr9	32523736	32523737	rs11795343	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Psoriasis	4,212 European ancestry cases, 8,032 European ancestry controls	NA		DDX58	rs11795343-T	NR	6E-9		1.19	[1.155-1.226]	Affymetrix, Illumina, Perlegen [up to 5493100] (imputed)	N
833	chr9	32523736	32523737	rs11795343	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Inflammatory skin disease	2,079 European ancestry atopic dermatitis cases, 4,212 European ancestry psoriasis cases, 11,899 European ancestry controls	NA		DDX58	rs11795343-?	NR	4E-12	(Psoriasis)			Affymetrix, Illumina [~ 5200000]	N
833	chr9	32523736	32523737	rs11795343	23143594	Tsoi LC	2012-12-01	Nat Genet	Identification of 15 new psoriasis susceptibility loci highlights the role of innate immunity.	Psoriasis	10,588 European ancestry cases, 22,806 European ancestry controls	NA		DDX58	rs11795343-T	0.597	8E-11		1.11		Illumina [111236] (imputed)	N
833	chr9	32550911	32550912	rs112527210	31194736	Tiensuu H	2019-06-13	PLoS Genet	Risk of spontaneous preterm birth and fetal growth associates with fetal SLIT2.	Early spontaneous preterm birth	172 Finnish ancestry infant cases, 419 Finnish ancestry infant controls	NA	9p21.1	TOPORS	rs112527210-?	NR	9E-6		2.57		Illumina [6778521] (imputed)	N
833	chr9	32556379	32556380	rs17290760	22610502	Kennedy RB	2012-05-19	Hum Genet	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune response to smallpox vaccine (IL-6)	Up to 512 European ancestry individuals, 199 African American individuals	NA	9p21.1	NDUFB6, TOPORS	rs17290760-G		1E-7	(AA)			Illumina [NR]	N
833	chr9	32574055	32574056	rs185804635	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	CTACK levels	3,631 Finnish ancestry individuals	NA	9p21.1	NR	rs185804635-T	NR	6E-7		0.6457	[0.39-0.91] SD units decrease	NR [10700000] (imputed)	N
833	chr9	32576228	32576229	rs146870654	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	9p21.1		rs146870654-?	NR	2E-8				NR [~ 8900000] (imputed)	N
833	chr9	32586821	32586822	rs12000260	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	9p21.1	TOPORS	rs12000260-?	NR	8E-6	(glutamate)	0.22215691	[0.12-0.32] unit increase	Affymetrix [at least 2500000] (imputed)	N
833	chr9	32605757	32605758	rs56036190	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	UBA1611 abundance in stool	5,959 Finnish ancestry individuals	NA	9p21.1		rs56036190-G	0.173192	1E-8		0.039461	[0.026-0.053] unit increase	Illumina [7980478] (imputed)	N
833	chr9	32620361	32620362	rs60131401	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9p21.1	NR	rs60131401-A	0.0122	9E-9	(C11orf54)	0.3486	NR unit increase	Illumina [1671387] (imputed)	N
833	chr9	32620361	32620362	rs60131401	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9p21.1	NR	rs60131401-A	0.0122	3E-11	(HGD)	1.31	NR unit increase	Illumina [1671387] (imputed)	N
833	chr9	32620361	32620362	rs60131401	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9p21.1	NR	rs60131401-A	0.0122	1E-8	(ARG1)	3.557	NR unit increase	Illumina [1671387] (imputed)	N
833	chr9	32620361	32620362	rs60131401	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9p21.1	NR	rs60131401-A	0.0122	1E-8	(ABRACL)	0.04229	NR unit increase	Illumina [1671387] (imputed)	N
834	chr9	32755027	32755028	rs10758161	22658931	Pajewski NM	2012-05-30	Vaccine	A genome-wide association study of host genetic determinants of the antibody response to Anthrax Vaccine Adsorbed.	Immune response to anthrax vaccine	726 European ancestry individuals	NA	9p21.1	TAF1L, TMEM215	rs10758161-G	NR	8E-6		0.159	[0.088-0.230] unit decrease	Affymetrix [736996]	N
835	chr9	32867480	32867481	rs4463516	25710658	Diouf B	2015-02-24	JAMA	Association of an inherited genetic variant with vincristine-related peripheral neuropathy in children with acute lymphoblastic leukemia.	Vincristine-induced peripheral neuropathy in acute lymphoblastic leukemia	53 European ancestry cases with peripheral neuropathy, 156 cases without peripheral neuropathy, 10 African ancestry cases with peripheral neuropathy, 33 African ancestry cases without peripheral neuropathy, 1 Asian ancestry case with peripheral neuropathy, 1 Asian ancestry case without peripheral neuropathy, 14 Hispanic cases with peripheral neuropathy, 30 Hispanic cases without peripheral neuropathy, 8 cases with peripheral neuropathy, 15 cases without peripheral neuropathy	NA	9p21.1	TMEM215	rs4463516-?	NR	3E-8		2.89	[1.90-4.39]	Affymetrix [1576016] (imputed)	N
835	chr9	32870067	32870068	rs10971170	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	9p21.1	NR	rs10971170-G	0.969529949122017	9E-6	(IGP16)	0.4143	[0.23-0.6] unit increase	Illumina [~ 2500000] (imputed)	N
835	chr9	32878476	32878477	rs185851141	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	CTACK levels	3,631 Finnish ancestry individuals	NA	9p21.1	NR	rs185851141-G	NR	1E-6		0.6455	[0.38-0.91] SD units increase	NR [10700000] (imputed)	N
835	chr9	32888519	32888520	rs4879628	26580837	Chen CJ	2015-11-18	Biomark Med	A genome-wide association study on amyotrophic lateral sclerosis in the Taiwanese Han population.	Amyotrophic lateral sclerosis	94 Taiwanese Han ancestry cases, 376 Taiwanese Han ancestry controls	NA	9p21.1	intergenic	rs4879628-T	0.055	1E-6		3.293	[NR]	Affymetrix [633420]	N
836	chr9	32914588	32914589	rs12377462	22367966	Lin X	2012-02-24	Hum Mol Genet	Genome-wide association study identifies novel loci associated with serum level of vitamin B12 in Chinese men.	Vitamin B12 levels	1,999 Han Chinese ancestry individuals	1,496 Chinese ancestry individuals	9p21.1	intergenic	rs12377462-?	NR	2E-6		28.53	[16.79-40.27] pg/ml increase	Illumina [1940245] (imputed)	N
836	chr9	32975209	32975210	rs10813912	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Age at menopause	approximately 143,000 European ancestry individuals	NA	9p21.1		rs10813912-?	NR	1E-9				NR [~ 8900000] (imputed)	N
836	chr9	32987421	32987422	rs184473821	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	9p21.1	APTX	rs184473821-T	0.0012	6E-6		1.8389	[1.04-2.64] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
836	chr9	32995844	32995845	rs191205856	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	9p21.1		rs191205856-A	NR	2E-8		0.0797	[0.052-0.107] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
836	chr9	33010336	33010337	rs17226825	34311721	Alotaibi RN	2021-07-26	BMC Oral Health	Genome-Wide Association Study (GWAS) of dental caries in diverse populations.	Permanent dental caries (decayed and filled teeth)	2,570 adults	NA	9p21.1		rs17226825-?	NR	7E-8		1.42	unit decrease	Illumina [8859951] (imputed)	N
836	chr9	33012381	33012382	rs4879656	26414677	Day FR	2015-11-01	Nat Genet	Large-scale genomic analyses link reproductive aging to hypothalamic signaling, breast cancer susceptibility and BRCA1-mediated DNA repair.	Menopause (age at onset)	up to 69,626 European ancestry women	NA	9p21.1	APTX	rs4879656-A	0.37	2E-8		0.12	[0.081-0.159] years decrease	Affymetrix, Illumina [~ 2600000] (imputed)	N
837	chr9	33037487	33037488	rs188517977	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	CTACK levels	3,631 Finnish ancestry individuals	NA	9p21.1	NR	rs188517977-G	NR	1E-6		0.6448	[0.38-0.91] SD units decrease	NR [10700000] (imputed)	N
837	chr9	33053429	33053430	rs7041702	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	9p21.1		rs7041702-A	0.7406	5E-12		0.0111	[0.008-0.0142] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
837	chr9	33053429	33053430	rs7041702	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	9p21.1	Intergenic	rs7041702-A	0.7406	3E-12	(MTAG)	0.0104	[0.0075-0.0133] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
837	chr9	33056298	33056299	rs11789823	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	9p21.1	NR	rs11789823-?	NR	3E-6				Affymetrix [NR]	N
837	chr9	33084089	33084090	rs185006754	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	9p21.1	SMU1	rs185006754-A	0.00820878248878073	3E-6	(O_Lactobacillales_HB)	1.66773	[0.97-2.36] unit decrease	Illumina [7711310] (imputed)	N
837	chr9	33084731	33084732	rs12554192	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	9p21.1	NR	rs12554192-A	0.73	2E-11		0.0137	[0.0096-0.0178] unit decrease	NR [NR]	N
837	chr9	33097995	33097996	rs13300152	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	9p21.1		rs13300152-?	NR	5E-8				NR [~ 8900000] (imputed)	N
837	chr9	33106138	33106139	rs2481061	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	9p21.1	Intergenic	rs2481061-A	0.4195	1E-8	(MTAG)	0.0096	[0.0063-0.0129] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
837	chr9	33109995	33109996	rs62544382	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	9p21.1	SMU1, B4GALT1	rs62544382-T	0.57	8E-33		11.9	z-score increase	Affymetrix [4314223] (imputed)	N
837	chr9	33113321	33113322	rs7019909	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	9p21.1		rs7019909-T	NR	6E-10		0.0101	[0.007-0.0132] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
837	chr9	33113321	33113322	rs7019909	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9p21.1	B4GALT1	rs7019909-T	0.103	8E-29	(Beta-1,4-galactosyltransferase 1, B4GALT1.13381.49.3)	0.45	[0.37-0.53] unit increase	Affymetrix [10572788] (imputed)	N
837	chr9	33116940	33116941	rs12352863	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	9p21.1	B4GALT1	rs12352863-C	0.187422	2E-10		0.018156564	[0.013-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
837	chr9	33116940	33116941	rs12352863	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	9p21.1	B4GALT1	rs12352863-C	0.187401	1E-10		0.018286912	[0.013-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
837	chr9	33116940	33116941	rs12352863	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	9p21.1	B4GALT1	rs12352863-C	0.187417	1E-10		0.01838387	[0.013-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
837	chr9	33116940	33116941	rs12352863	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	9p21.1	NR	rs12352863-C	0.188338	2E-10		0.015111	[0.01-0.02] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
837	chr9	33116940	33116941	rs12352863	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9p21.1	NR	rs12352863-C	0.235977	4E-10				Affymetrix, Illumina [24653286] (imputed)	N
837	chr9	33116940	33116941	rs12352863	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9p21.1	NR	rs12352863-C	0.23391	5E-10				Affymetrix, Illumina [24558453] (imputed)	N
837	chr9	33116940	33116941	rs12352863	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	9p21.1		rs12352863-?	NR	5E-13				NR [~ 8900000] (imputed)	N
837	chr9	33117523	33117524	rs2031902	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CD163	5,368 Icelandic ancestry individuals	NA	9p21.1		rs2031902-C	0.3915	2E-13		0.141564	[0.1-0.18] unit increase	Illumina [7506463] (imputed)	N
837	chr9	33117953	33117954	rs60988380	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	9p21.1	B4GALT1	rs60988380-C	0.9053125	6E-8	(B4GALT1, 13381_49_3)	0.21648687	[0.14-0.29] unit decrease	Illumina [> 1000000] (imputed)	N
837	chr9	33117964	33117965	rs7865362	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	9p21.1		rs7865362-T	NR	2E-51		0.0302	[0.026-0.034] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
837	chr9	33117964	33117965	rs7865362	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	150,068 East Asian ancestry individuals	NA	9p21.1		rs7865362-T	0.62208	1E-16		0.0302335	[0.023-0.037] unit decrease	Illumina [13478956] (imputed)	N
837	chr9	33117964	33117965	rs7865362	33536631	Bell S	2021-02-03	Commun Biol	A genome-wide meta-analysis yields 46 new loci associating with biomarkers of iron homeostasis.	Iron status biomarkers (ferritin levels)	246,139 European ancestry individuals	NA	9p21.1	B4GALT1	rs7865362-T	0.36	1E-11		0.025	[0.018-0.032] SD increase	Affymetrix, Illumina [40000000] (imputed)	N
837	chr9	33117964	33117965	rs7865362	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Aspartate aminotransferase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	9p21.1	B4GALT1	rs7865362-?		1E-13		0.0294	[0.022-0.037] unit increase	Illumina [31500000] (imputed)	N
837	chr9	33117964	33117965	rs7865362	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Aspartate aminotransferase levels	134,154 Japanese ancestry individuals	NA	9p21.1	B4GALT1	rs7865362-?	NR	6E-14		0.03073	[0.023-0.039] unit decrease novel	Illumina [6108953] (imputed)	N
837	chr9	33118903	33118904	rs1137642	34719683	Park JS	2021-11-01	J Hum Genet	Genome-wide meta-analysis revealed several genetic loci associated with serum uric acid levels in Korean population: an analysis of Korea Biobank data.	Serum uric acid levels	60,585 Korean ancestry individuals	NA	9p21.1		rs1137642-A	0.44	2E-8		0.033	increase	NR [7104359] (imputed)	N
837	chr9	33122644	33122645	rs10113903	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	9p21.1	NR	rs10113903-C	0.308537513851653	7E-6	(IGP74)	0.1529	[0.086-0.22] unit increase	Illumina [~ 2500000] (imputed)	N
837	chr9	33124160	33124161	rs10971419	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals, at least 88,461 European ancestry individuals	NA	9p21.1	B4GALT1	rs10971419-T	0.724	4E-7	(EA)	0.020714285	[0.013-0.029] unit increase	Illumina [1986983] (imputed)	N
837	chr9	33124160	33124161	rs10971419	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals, at least 88,461 European ancestry individuals	NA	9p21.1	B4GALT1	rs10971419-T	0.4542	7E-6	(Japanese)	0.018	[0.01-0.026] unit increase	Illumina [1986983] (imputed)	N
837	chr9	33124871	33124872	rs12342831	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	9p21.1	NR	rs12342831-C	0.2631	9E-10	(IgG1_G2FS1/IgG1_G1FS1)	0.2505	[0.17-0.33] unit decrease	Affymetrix [up to 18185628] (imputed)	N
837	chr9	33124871	33124872	rs12342831	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	9p21.1	NR	rs12342831-C	0.2631	4E-16	(IgG4_G2FS1)	0.3346	[0.25-0.42] unit decrease	Affymetrix [up to 18185628] (imputed)	N
837	chr9	33124871	33124872	rs12342831	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	9p21.1	NR	rs12342831-C	0.2631	3E-8	(IgG4_G2F)	0.2336	[0.15-0.32] unit decrease	Affymetrix [up to 18185628] (imputed)	N
837	chr9	33124871	33124872	rs12342831	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	9p21.1	NR	rs12342831-C	0.2631	3E-20	(IgG4_G2FS1/IgG4_G1FS1)	0.3813	[0.3-0.46] unit decrease	Affymetrix [up to 18185628] (imputed)	N
837	chr9	33124871	33124872	rs12342831	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	9p21.1	NR	rs12342831-C	0.2631	2E-7	(IgG1_G2F/IgG1_G1F)	0.2134	[0.13-0.29] unit decrease	Affymetrix [up to 18185628] (imputed)	N
837	chr9	33124871	33124872	rs12342831	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	9p21.1	NR	rs12342831-C	0.2631	1E-9	(IgG2_G2FS1/IgG2_G1FS1)	0.2483	[0.17-0.33] unit decrease	Affymetrix [up to 18185628] (imputed)	N
837	chr9	33124871	33124872	rs12342831	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	9p21.1	NR	rs12342831-C	0.2631	1E-14	(IgG4_G2F/IgG4_G1F)	0.3203	[0.24-0.4] unit decrease	Affymetrix [up to 18185628] (imputed)	N
837	chr9	33124871	33124872	rs12342831	28878392	Shen X	2017-09-06	Nat Commun	Multivariate discovery and replication of five novel loci associated with Immunoglobulin G N-glycosylation.	IgG galactosylation phenotypes (multivariate analysis)	1,960 Orcadian (founder/genetic isolate) individuals	NA	9p21.1	B4GALT1	rs12342831-C	0.29	7E-8				Illumina [NR]	N
837	chr9	33124871	33124872	rs12342831	28878392	Shen X	2017-09-06	Nat Commun	Multivariate discovery and replication of five novel loci associated with Immunoglobulin G N-glycosylation.	IgG fucosylation phenotypes (multivariate analysis)	1,960 Orcadian (founder/genetic isolate) individuals	NA	9p21.1	B4GALT1	rs12342831-C	0.29	5E-13				Illumina [NR]	N
837	chr9	33124871	33124872	rs12342831	28878392	Shen X	2017-09-06	Nat Commun	Multivariate discovery and replication of five novel loci associated with Immunoglobulin G N-glycosylation.	IgG N-glycosylation phenotypes (multivariate analysis)	1,960 Orcadian (founder/genetic isolate) individuals	NA	9p21.1	B4GALT1	rs12342831-C	0.29	1E-10				Illumina [NR]	N
837	chr9	33124871	33124872	rs12342831	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	9p21.1	B4GALT1	rs12342831-C	0.262634642316258	3E-10	(IGP24)	0.2233	[0.15-0.29] unit decrease	Illumina [~ 2500000] (imputed)	N
837	chr9	33124871	33124872	rs12342831	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	9p21.1	B4GALT1	rs12342831-C	0.262623398308856	3E-11	(IGP17)	0.2366	[0.17-0.31] unit decrease	Illumina [~ 2500000] (imputed)	N
837	chr9	33124871	33124872	rs12342831	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	9p21.1	B4GALT1	rs12342831-C	0.2625544125	1E-10	(IGP36)	0.2299	[0.16-0.3] unit increase	Illumina [~ 2500000] (imputed)	N
837	chr9	33124871	33124872	rs12342831	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	9p21.1	B4GALT1	rs12342831-C	0.262517807212823	5E-7	(IGP3)	0.1777	[0.11-0.25] unit increase	Illumina [~ 2500000] (imputed)	N
837	chr9	33124871	33124872	rs12342831	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	9p21.1	B4GALT1	rs12342831-C	0.262517754229742	3E-11	(IGP26)	0.2358	[0.17-0.31] unit decrease	Illumina [~ 2500000] (imputed)	N
837	chr9	33124871	33124872	rs12342831	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	1,848 European ancestry individuals	NA	9p21.1	B4GALT1	rs12342831-T	0.73755	5E-8	(IgG1G2)	0.0496	[0.032-0.068] unit increase	Illumina [~ 2500000] (imputed)	N
837	chr9	33124999	33125000	rs10971420	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	9p21.1	B4GALT1	rs10971420-T	0.6875	4E-14		0.030745	[0.023-0.039] mg/dL increase	Affymetrix, Illumina [8217339] (imputed)	N
837	chr9	33124999	33125000	rs10971420	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	9p21.1	NR	rs10971420-C	0.3271	2E-12	(IgG4 FGS1/(FG+FGS1))	0.2689	[0.19-0.34] unit decrease	Affymetrix [up to 18185628] (imputed)	N
837	chr9	33125803	33125804	rs10758189	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	9p21.1	NR	rs10758189-C	0.31099528984862	2E-6	(IGP22)	0.1679	[0.099-0.236] unit decrease	Illumina [~ 2500000] (imputed)	N
837	chr9	33128020	33128021	rs10813951	32128391	Klaric L	2020-02-19	Sci Adv	Glycosylation of immunoglobulin G is regulated by a large network of genes pleiotropic with inflammatory diseases.	IgG N-glycosylation phenotypes (multivariate analysis)	8,090 European ancestry individuals	2,388 European ancestry individuals	9p21.1	B4GALT1	rs10813951-A	0.732	9E-34		0.23	[NR] unit increase	Illumina [up to 741151] (imputed)	N
837	chr9	33128020	33128021	rs10813951	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	9p21.1	NR	rs10813951-G	0.262989649130629	7E-8	(IGP69)	0.1926	[0.12-0.26] unit increase	Illumina [~ 2500000] (imputed)	N
837	chr9	33128020	33128021	rs10813951	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	9p21.1	NR	rs10813951-G	0.262766006241641	4E-7	(IGP75)	0.1812	[0.11-0.25] unit increase	Illumina [~ 2500000] (imputed)	N
837	chr9	33128020	33128021	rs10813951	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	9p21.1	NR	rs10813951-G	0.262743396083667	5E-10	(IGP40)	0.2193	[0.15-0.29] unit increase	Illumina [~ 2500000] (imputed)	N
837	chr9	33128020	33128021	rs10813951	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	9p21.1	NR	rs10813951-G	0.262743396083667	3E-6	(IGP76)	0.1669	[0.097-0.237] unit decrease	Illumina [~ 2500000] (imputed)	N
837	chr9	33128020	33128021	rs10813951	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	9p21.1	NR	rs10813951-G	0.262554376171352	1E-9	(IGP39)	0.2169	[0.15-0.29] unit increase	Illumina [~ 2500000] (imputed)	N
837	chr9	33128616	33128617	rs13297246	31163085	Sharapov SZ	2019-06-15	Hum Mol Genet	Defining the genetic control of human blood plasma N-glycome using genome-wide association study.	N-glycan levels	2,763 individuals	327 Arab, South Asian and Filipino ancestry individuals, 294 European ancestry individuals, 591 individuals.	9p21.1	B4GALT1	rs13297246-G	0.832	3E-12	(plasma glycan peak 67)	0.2648	[0.19-0.34] unit decrease	Illumina [8557543] (imputed)	N
837	chr9	33134616	33134617	rs3824459	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	9p21.1	NR	rs3824459-T	0.0205	5E-14	(IgG2 G0n)	0.924	[0.68-1.16] unit decrease	Affymetrix [up to 18185628] (imputed)	N
837	chr9	33134616	33134617	rs3824459	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	9p21.1	NR	rs3824459-T	0.0204	8E-14	(IgG2_G1F/IgG2_G0F)	0.9179	[0.68-1.16] unit increase	Affymetrix [up to 18185628] (imputed)	N
837	chr9	33134616	33134617	rs3824459	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	9p21.1	NR	rs3824459-T	0.0204	4E-7	(IgG1_G1/IgG1_G0)	0.6225	[0.38-0.86] unit increase	Affymetrix [up to 18185628] (imputed)	N
837	chr9	33134616	33134617	rs3824459	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	9p21.1	NR	rs3824459-T	0.0204	4E-14	(IgG2_G1FN/IgG2_G0FN)	0.9243	[0.69-1.16] unit increase	Affymetrix [up to 18185628] (imputed)	N
837	chr9	33134616	33134617	rs3824459	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	9p21.1	NR	rs3824459-T	0.0204	3E-8	(IgG1_G2Fn)	0.6786	[0.44-0.92] unit increase	Affymetrix [up to 18185628] (imputed)	N
837	chr9	33134616	33134617	rs3824459	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	9p21.1	NR	rs3824459-T	0.0204	3E-8	(IgG1_G2F)	0.6865	[0.44-0.93] unit increase	Affymetrix [up to 18185628] (imputed)	N
837	chr9	33134616	33134617	rs3824459	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	9p21.1	NR	rs3824459-T	0.0204	3E-8	(IgG1 Galactosylation)	0.6793	[0.44-0.92] unit increase	Affymetrix [up to 18185628] (imputed)	N
837	chr9	33134616	33134617	rs3824459	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	9p21.1	NR	rs3824459-T	0.0204	3E-7	(IgG1 G2n)	0.6286	[0.39-0.87] unit increase	Affymetrix [up to 18185628] (imputed)	N
837	chr9	33139452	33139453	rs3780486	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	9p21.1	NR	rs3780486-C	0.737450810521623	5E-11	(IGP38)	0.2341	[0.16-0.3] unit decrease	Illumina [~ 2500000] (imputed)	N
837	chr9	33139452	33139453	rs3780486	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	9p21.1	NR	rs3780486-C	0.737437251227131	9E-11	(IGP37)	0.2309	[0.16-0.3] unit decrease	Illumina [~ 2500000] (imputed)	N
837	chr9	33139452	33139453	rs3780486	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	9p21.1	NR	rs3780486-C	0.737357337934105	1E-6	(IGP31)	0.1725	[0.1-0.24] unit decrease	Illumina [~ 2500000] (imputed)	N
837	chr9	33141319	33141320	rs7868781	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	9p21.1	B4GALT1	rs7868781-A	0.6094	5E-20		0.0296	[0.023-0.036] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
837	chr9	33141319	33141320	rs7868781	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	9p21.1	NR	rs7868781-A	0.4073	2E-7	(men)	0.0265	[0.017-0.036] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
837	chr9	33141319	33141320	rs7868781	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	9p21.1	NR	rs7868781-A	0.3907	3E-10	(women)	0.0294	[0.02-0.039] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
837	chr9	33149183	33149184	rs13296176	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	9p21.1	NR	rs13296176-C	NR	5E-13		0.0279	[0.02-0.036] unit increase	Affymetrix [9000000] (imputed)	N
837	chr9	33149183	33149184	rs13296176	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	9p21.1	NR	rs13296176-C	NR	6E-10		0.0239	[0.016-0.032] unit decrease	Affymetrix [9000000] (imputed)	N
837	chr9	33149198	33149199	rs57591247	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	9p21.1	NR	rs57591247-D	0.389647	3E-11		0.014031	[0.0099-0.0182] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
837	chr9	33149339	33149340	rs113197944	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	9p21.1	NR	rs113197944-A	0.0172	8E-15	(IgG2 G1n)	1.0251	[0.77-1.28] unit increase	Affymetrix [up to 18185628] (imputed)	N
837	chr9	33149339	33149340	rs113197944	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	9p21.1	NR	rs113197944-A	0.0171	1E-10	(IgG2_G1F)	0.8764	[0.61-1.14] unit increase	Affymetrix [up to 18185628] (imputed)	N
837	chr9	33151414	33151415	rs1328899	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	9p21.1	NR	rs1328899-T	0.0176	8E-9	(IgG1_G0FNn)	0.7825	[0.52-1.05] unit decrease	Affymetrix [up to 18185628] (imputed)	N
837	chr9	33151414	33151415	rs1328899	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	9p21.1	NR	rs1328899-T	0.0176	5E-9	(IgG1_G0FN)	0.7875	[0.52-1.05] unit decrease	Affymetrix [up to 18185628] (imputed)	N
837	chr9	33151414	33151415	rs1328899	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	9p21.1	NR	rs1328899-T	0.0176	4E-14	(IgG2_G1Fn)	1.0023	[0.74-1.26] unit increase	Affymetrix [up to 18185628] (imputed)	N
837	chr9	33151414	33151415	rs1328899	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	9p21.1	NR	rs1328899-T	0.0176	3E-9	(IgG1_G1F/IgG1_G0F)	0.8052	[0.54-1.07] unit increase	Affymetrix [up to 18185628] (imputed)	N
837	chr9	33151414	33151415	rs1328899	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	9p21.1	NR	rs1328899-T	0.0176	3E-10	(IgG1_G1FN/IgG1_G0FN)	0.8511	[0.59-1.12] unit increase	Affymetrix [up to 18185628] (imputed)	N
837	chr9	33151414	33151415	rs1328899	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	9p21.1	NR	rs1328899-T	0.0176	1E-9	(IgG1 G0n)	0.8198	[0.55-1.09] unit decrease	Affymetrix [up to 18185628] (imputed)	N
837	chr9	33151414	33151415	rs1328899	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	9p21.1	NR	rs1328899-T	0.0176	1E-7	(IgG1 G1n)	0.7322	[0.46-1] unit increase	Affymetrix [up to 18185628] (imputed)	N
837	chr9	33153272	33153273	rs72723005	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	9p21.1	NR	rs72723005-A	NR	1E-9		0.0245	[0.017-0.032] unit increase	Affymetrix [9000000] (imputed)	N
837	chr9	33153526	33153527	rs10813957	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	9p21.1	NR	rs10813957-G	0.738414638629283	7E-6	(IGP43)	0.1601	[0.09-0.23] unit decrease	Illumina [~ 2500000] (imputed)	N
837	chr9	33153526	33153527	rs10813957	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	9p21.1	NR	rs10813957-G	0.738414638629283	5E-8	(IGP13)	0.196	[0.13-0.27] unit increase	Illumina [~ 2500000] (imputed)	N
837	chr9	33153526	33153527	rs10813957	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	9p21.1	NR	rs10813957-G	0.738414638629283	3E-9	(IGP57)	0.2125	[0.14-0.28] unit increase	Illumina [~ 2500000] (imputed)	N
837	chr9	33153526	33153527	rs10813957	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	9p21.1	NR	rs10813957-G	0.738414638629283	2E-9	(IGP53)	0.2163	[0.15-0.29] unit increase	Illumina [~ 2500000] (imputed)	N
838	chr9	33163058	33163059	rs56030777	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	9p21.1	NR	rs56030777-A	NR	3E-9		0.017	[0.011-0.023] unit increase	Affymetrix [9000000] (imputed)	N
838	chr9	33168890	33168891	rs10971434	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	9p21.1	NR	rs10971434-A	0.2682	8E-10	(IgG4_G2Fn)	0.2631	[0.18-0.35] unit decrease	Affymetrix [up to 18185628] (imputed)	N
838	chr9	33168890	33168891	rs10971434	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	9p21.1	NR	rs10971434-A	0.2682	1E-9	(IgG4_G2n)	0.2585	[0.17-0.34] unit decrease	Affymetrix [up to 18185628] (imputed)	N
838	chr9	33169033	33169034	rs13287724	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	9p21.1	B4GALT1-AS1	rs13287724-A	0.8913	2E-9		0.003	[0.0018-0.0042] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
838	chr9	33179450	33179451	rs28517717	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	9p21.1		rs28517717-T	NR	1E-29		0.0218	[0.018-0.026] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
838	chr9	33180361	33180362	rs10813960	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	9p21.1	NR	rs10813960-T	0.27	2E-27		0.0226	[0.019-0.027] unit decrease	NR [NR]	N
838	chr9	33180361	33180362	rs10813960	31985003	Boocock J	2020-01-27	Hum Mol Genet	Genomic dissection of 43 serum urate-associated loci provides multiple insights into molecular mechanisms of urate control.	Urate levels	110,238 European ancestry individuals, 21,471 East Asian individuals	NA	9p21.1	B4GALT1	rs10813960-C		2E-9		0.035	[0.023-0.047] mg/dl increase	NR [NR] (imputed)	N
838	chr9	33180361	33180362	rs10813960	23263486	Kottgen A	2012-12-23	Nat Genet	Genome-wide association analyses identify 18 new loci associated with serum urate concentrations.	Urate levels	49,825 European ancestry males, 60,522 European ancestry females	Up to 32,813 European ancestry individuals	9p21.1	B4GALT1	rs10813960-T	0.29	4E-7		0.03	[0.018-0.042] mg/dl decrease	Affymetrix, Illumina, Perlegen [2450547] (imputed)	N
838	chr9	33180565	33180566	rs12337458	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	9p21.1	NR	rs12337458-C	0.0133	2E-10	(IgG2 Galactosylation)	0.9873	[0.68-1.29] unit increase	Affymetrix [up to 18185628] (imputed)	N
838	chr9	33180565	33180566	rs12337458	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	9p21.1	NR	rs12337458-C	0.0132	6E-10	(IgG2_G2F)	0.9829	[0.67-1.29] unit increase	Affymetrix [up to 18185628] (imputed)	N
838	chr9	33180565	33180566	rs12337458	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	9p21.1	NR	rs12337458-C	0.0132	1E-9	(IgG2_G2Fn)	0.9584	[0.65-1.27] unit increase	Affymetrix [up to 18185628] (imputed)	N
838	chr9	33186078	33186079	rs747363	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LYVE1	5,330 Icelandic ancestry individuals	NA	9p21.1		rs747363-C	0.4979	3E-12		0.107758	[0.078-0.138] unit increase	Illumina [7506463] (imputed)	N
838	chr9	33205407	33205408	rs4879670	26305897	Iyengar SK	2015-08-25	PLoS Genet	Genome-Wide Association and Trans-ethnic Meta-Analysis for Advanced Diabetic Kidney Disease: Family Investigation of Nephropathy and Diabetes (FIND).	Diabetic kidney disease	1,564 African American cases, 369  African American diabetic controls, 1,288 African American non-diabetic controls, 538 American Indian ancestry cases, 319 American Indian ancestry diabetic controls, 342 European ancestry cases, 404 European ancestry diabetic controls, 779 Mexican ancestry cases, 594 Mexican ancestry diabetic controls	950 African American cases, 50 African American diabetic controls, 1,887 African American non-diabetic controls, 471 American Indian ancestry cases, 340 American Indian ancestry diabetic controls, 486 American Indian ancestry non-diabetic controls, 582 European ancestry ancestry cases, 205 European ancestry diabetic controls, 2,568 European ancestry non-diabetic controls	9p13.3	intergenic	rs4879670-G	NR	2E-6	(additive )	1.15	[1.09-1.22]	Affymetrix [NR]	N
838	chr9	33215361	33215362	rs62544433	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Major depressive disorder (probable)	30,603 British ancestry cases, 143,916 British ancestry controls	NA	9p13.3	NR	rs62544433-G	0.1144	4E-7		0.0103	[0.0064-0.0142] unit increase	NR [7666894] (imputed)	N
838	chr9	33217265	33217266	rs830407	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	9p13.3	NR	rs830407-?	NR	1E-11				Affymetrix [NR]	N
838	chr9	33217265	33217266	rs830407	20889312	Wang KS	2010-10-01	Schizophr Res	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	9p13.3	NR	rs830407-?	NR	8E-6		1.3581	[NR]	Affymetrix [722112]	N
838	chr9	33218921	33218922	rs28447319	26379185	Garcia-Etxebarria K	2015-09-17	PLoS One	No Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity.	Severe influenza A (H1N1) infection	49 European ancestry severe cases, 549 European ancestry population controls	NA	9p13.3	SPINK4, B4GALT1	rs28447319-?	0.003788	9E-11		20.76	[5.736-75.16]	Affymetrix [547296]	N
838	chr9	33218921	33218922	rs28447319	26379185	Garcia-Etxebarria K	2015-09-17	PLoS One	No Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity.	Mild influenza (H1N1) infection	107 European ancestry mild cases, 549 European ancestry population controls	NA	9p13.3	SPINK4, B4GALT1	rs28447319-?	0.003788	1E-13		21.24	[20.11-22.37]	Affymetrix [547296]	N
838	chr9	33218921	33218922	rs28447319	26379185	Garcia-Etxebarria K	2015-09-17	PLoS One	No Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity.	Influenza A (H1N1) infection	49 European ancestry severe cases, 107 European ancestry mild cases, 549 European ancestry population controls	NA	9p13.3	SPINK4, B4GALT1	rs28447319-?	0.003788	1E-14		21.08	[[7.107-62.55]	Affymetrix [547296]	N
838	chr9	33234038	33234039	rs1630171	35131881	Testori A	2022-02-07	Cancer Epidemiol Biomarkers Prev	Genetic analysis in African American children supports ancestry specific neuroblastoma susceptibility.	Neuroblastoma	629 African American cases, 2,990 African American controls	NA	9p13.3		rs1630171-A	NR	8E-6		0.3039	unit increase	Illumina [8524982] (imputed)	N
838	chr9	33283581	33283582	rs12336160	20932654	Kerns SL	2010-10-05	Int J Radiat Oncol Biol Phys	Genome-wide association study to identify single nucleotide polymorphisms (SNPs) associated with the development of erectile dysfunction in African-American men after radiotherapy for prostate cancer.	Erectile dysfunction and prostate cancer treatment	27 African American cases, 52 African American controls	NA	9p13.3	CHMP5	rs12336160-?	0.09	1E-6		7.26	[NR]	Affymetrix [512497]	N
839	chr9	33302077	33302077	rs199840084	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-12p70 levels	8,270 Finnish ancestry individuals	NA	9p13.3	NR	rs199840084-C		2E-6		0.2732	[0.16-0.39] SD units increase	NR [10700000] (imputed)	N
839	chr9	33314972	33314973	rs831277	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	9p13.3		rs831277-T	NR	3E-12		0.0184	[0.013-0.023] unit increase	Affymetrix, Illumina [20535873] (imputed)	N
839	chr9	33344251	33344252	rs642157	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	200,622 European ancestry individuals	NA	9p13.3	NFX1	rs642157-A	0.8526	8E-8		0.0132	[0.0081-0.0183] unit increase	Affymetrix, Illumina [34064007] (imputed)	N
839	chr9	33373189	33373189	rs145465051	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	9p13.3	NR	rs145465051-GGGA	NR	4E-9		0.02	[0.013-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
839	chr9	33385155	33385156	rs144994089	30220432	Haas ME	2018-09-06	Am J Hum Genet	Genetic Association of Albuminuria with Cardiometabolic Disease and Blood Pressure.	Urinary albumin excretion	382,500 European ancestry individuals	NA	9p13.3	AQP7	rs144994089-T	0.001	1E-8		0.1456	[0.095-0.196] unit increase	Affymetrix [11709857] (imputed)	N
839	chr9	33406296	33406297	rs7029953	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	9p13.3	NR	rs7029953-?	NR	1E-6				Affymetrix [NR]	N
839	chr9	33414780	33414783	rs143982833	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	CTACK levels	3,631 Finnish ancestry individuals	NA	9p13.3	NR	rs143982833-TCTC	NR	2E-6		0.4	[0.24-0.56] SD units increase	NR [10700000] (imputed)	N
839	chr9	33420007	33420008	rs10758202	29317602	Hall LS	2018-01-10	Transl Psychiatry	Genome-wide meta-analyses of stratified depression in Generation Scotland and UK Biobank.	Major depressive disorder	6,997 European ancestry female cases, 16,172 European ancestry female controls, 3,852 European ancestry male cases, 16,034 European ancestry male controls	NA	9p13.3	intergenic	rs10758202-A	NR	2E-6	(males)	0.14	[0.081-0.199] unit increase	Affymetrix, Illumina [7105178] (imputed)	N
839	chr9	33421419	33421420	rs10758203	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung adenocarcinoma	11,273 European ancestry cases,  55,483 European ancestry controls	NA	9p13.3	AQP7, AQP3	rs10758203-G	0.678494694	9E-7		1.0911608	[1.05-1.13]	Illumina [10439017] (imputed)	N
839	chr9	33422488	33422488	rs35201538	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Lung adenocarcinoma	15,581 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	9p13.3	NR	rs35201538-C	NR	2E-8		0.91	[0.88-0.94]	NR [NR] (imputed)	N
839	chr9	33422488	33422488	rs35201538	31326317	Dai J	2019-07-17	Lancet Respir Med	Identification of risk loci and a polygenic risk score for lung cancer: a large-scale prospective cohort study in Chinese populations.	Non-small cell lung cancer	13,327 Chinese ancestry cases, 13,793 European ancestry cases, 13,328 Chinese ancestry controls, 14,027 European ancestry controls	NA	9p13.3	NR	rs35201538-C	0.65	5E-6	(East Asian)	1.1	[1.06-1.15]	Illumina [~ 11000000] (imputed)	N
839	chr9	33422488	33422488	rs35201538	31326317	Dai J	2019-07-17	Lancet Respir Med	Identification of risk loci and a polygenic risk score for lung cancer: a large-scale prospective cohort study in Chinese populations.	Lung adenocarcinoma	8,762 Chinese ancestry cases, 6,819 European ancestry cases, 13,328 Chinese ancestry controls, 14,027 European ancestry controls	NA	9p13.3	NR	rs35201538-C	0.65	3E-6	(East Asian)	1.11	[1.06-1.16]	Illumina [~ 11000000] (imputed)	N
839	chr9	33422488	33422488	rs35201538	31326317	Dai J	2019-07-17	Lancet Respir Med	Identification of risk loci and a polygenic risk score for lung cancer: a large-scale prospective cohort study in Chinese populations.	Lung adenocarcinoma	8,762 Chinese ancestry cases, 6,819 European ancestry cases, 13,328 Chinese ancestry controls, 14,027 European ancestry controls	NA	9p13.3	AQP3	rs35201538-C	0.676	2E-8		1.1	[1.06-1.13]	Illumina [~ 11000000] (imputed)	N
840	chr9	33453091	33453092	rs151155266	31605138	Avitabile M	2019-09-07	Carcinogenesis	Neural crest-derived tumor neuroblastoma and melanoma share 1p13.2 as susceptibility locus that shows a long-range interaction with the SLC16A1 gene.	Neuroblastoma or malignant cutaneous melanoma	2,101 European ancestry neuroblastoma cases, 12,874 European ancestry malignant cutaneous melanoma cases, 27,405 European ancestry controls	2,039 European ancestry neuroblastoma cases, 508 European ancestry malignant cutaneous melanoma cases, 3,469 European ancestry controls	9p13.3	AQP3, NOL6	rs151155266-C	0.014859	3E-7		1.5358746	[1.30-1.81]	NR [NR] (imputed)	N
840	chr9	33502472	33502473	rs117679069	31659325	Malhotra R	2019-10-28	Nat Genet	HDAC9 is implicated in atherosclerotic aortic calcification and affects vascular smooth muscle cell phenotype.	Abdominal aortic calcification levels	9,417 European ancestry individuals	1,595 African American individuals, 496 Hispanic or Latin American individuals	9p13.3	SUGT1P1	rs117679069-T	0.016	3E-7	(EA)	5.14	z score increase	Affymetrix, Illumina [9000000] (imputed)	N
841	chr9	33603208	33603209	rs184329319	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	CTACK levels	3,631 Finnish ancestry individuals	NA	9p13.3	NR	rs184329319-G	NR	8E-6		0.2919	[0.16-0.42] SD units increase	NR [10700000] (imputed)	N
841	chr9	33662949	33662950	rs7035873	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9p13.3		rs7035873-?	NR	6E-15				NR [~ 8900000] (imputed)	N
842	chr9	33730116	33730117	rs117500816	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	CTACK levels	3,631 Finnish ancestry individuals	NA	9p13.3	NR	rs117500816-T	NR	1E-6		0.2205	[0.13-0.31] SD units decrease	NR [10700000] (imputed)	N
842	chr9	33741591	33741592	rs10814041	32653958	Cho HW	2020-07-11	J Bone Miner Metab	Association between non-Caucasian-specific ASCC1 gene polymorphism and osteoporosis and obesity in Korean postmenopausal women.	Osteoporosis	443 Korean ancestry cases, 2,223 Korean ancestry controls	NA	9p13.3	NR	rs10814041-C	NR	2E-6		2.097	[1.544-2.848]	Affymetrix [NR]	N
842	chr9	33775651	33775652	rs10758232	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	9p13.3	PRSS3	rs10758232-C	0.6653	2E-8		0.002	[0.0014-0.0026] unit increase	Affymetrix [15275733] (imputed)	N
842	chr9	33782374	33782375	rs1971430	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	9p13.3		rs1971430-?	NR	2E-7				NR [~ 8900000] (imputed)	N
842	chr9	33787870	33787871	rs3843935	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	9p13.3	PRSS3	rs3843935-T	0.3916	6E-11		0.0155	[0.011-0.02] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
842	chr9	33799369	33799370	rs216345	20351715	Liu Y	2010-03-30	Mol Psychiatry	Meta-analysis of genome-wide association data of bipolar disorder and major depressive disorder.	Bipolar disorder	4,387 European and unknown ancestry cases, 6,209 European and unknown ancestry controls	NA	9p13.3	PRSS3, UBE2R2	rs216345-?	NR	4E-6				Affymetrix [1769948] (imputed)	N
842	chr9	33799369	33799370	rs216345	18711365	Ferreira MA	2008-08-17	Nat Genet	Collaborative genome-wide association analysis supports a role for ANK3 and CACNA1C in bipolar disorder.	Bipolar disorder	4,387 European ancestry cases, 6,209 European ancestry controls	NA	9p13.3	NR	rs216345-T	0.37	4E-6		1.15	[NR]	Affymetrix [1769948] (imputed)	N
842	chr9	33803407	33803408	rs10124307	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	9p13.3		rs10124307-?	NR	7E-11				NR [~ 8900000] (imputed)	N
842	chr9	33804166	33804167	rs216353	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	9p13.3		rs216353-A	NR	2E-12		0.0149	[0.011-0.019] unit increase	Affymetrix, Illumina [20536605] (imputed)	N
842	chr9	33806026	33806027	rs74180505	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	9p13.3	RP11-133O22.6	rs74180505-C	0.371586	3E-27		0.025242442	[0.021-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
843	chr9	33817616	33817617	rs855719	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	9p13.3	PRSS3, UBE2R2, UBAP2, DCAF12	rs855719-?		4E-13				Affymetrix, Illumina [NR] (imputed)	N
843	chr9	33822157	33822158	rs183939280	31250787	Fawns-Ritchie C	2019-06-01	Twin Res Hum Genet	Genetic Contributions to Health Literacy.	Health literacy	1,771 English ancestry cases, 4,012 English ancestry controls	NA	9p13.3	UBE2R2	rs183939280-C	NR	4E-6		0.02808	[0.016-0.04] unit increase	Illumina [NR] (imputed)	N
843	chr9	33827693	33827694	rs10971721	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	9p13.3	NA	rs10971721-T	0.1039	3E-13		0.0201	[0.015-0.026] unit decrease	NR [~ 27400000] (imputed)	N
843	chr9	33827693	33827694	rs10971721	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	9p13.3	UBE2R2	rs10971721-C	0.87	8E-6		0.026	[0.014-0.037] kg/m2 increase	Affymetrix, Illumina [2550021]	N
843	chr9	33832305	33832306	rs770250170	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	9p13.3	UBE2R2	rs770250170-C	0.461214	9E-9	(218 ms)	0.0299504	[0.019-0.041] unit increase	Affymetrix [10000000] (imputed)	N
843	chr9	33832305	33832306	rs770250170	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	9p13.3	UBE2R2	rs770250170-C	0.461214	8E-9	(184 ms)	0.0296238	[0.019-0.041] unit increase	Affymetrix [10000000] (imputed)	N
843	chr9	33832305	33832306	rs770250170	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	9p13.3	UBE2R2	rs770250170-C	0.461214	8E-10	(194 ms)	0.0317994	[0.021-0.043] unit increase	Affymetrix [10000000] (imputed)	N
843	chr9	33832305	33832306	rs770250170	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	9p13.3	UBE2R2	rs770250170-C	0.461214	7E-9	(220 ms)	0.0301572	[0.019-0.041] unit increase	Affymetrix [10000000] (imputed)	N
843	chr9	33832305	33832306	rs770250170	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	9p13.3	UBE2R2	rs770250170-C	0.461214	7E-9	(192 ms)	0.029727	[0.019-0.041] unit increase	Affymetrix [10000000] (imputed)	N
843	chr9	33832305	33832306	rs770250170	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	9p13.3	UBE2R2	rs770250170-C	0.461214	7E-9	(186 ms)	0.030417	[0.019-0.041] unit increase	Affymetrix [10000000] (imputed)	N
843	chr9	33832305	33832306	rs770250170	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	9p13.3	UBE2R2	rs770250170-C	0.461214	5E-9	(204 ms)	0.0297176	[0.019-0.041] unit increase	Affymetrix [10000000] (imputed)	N
843	chr9	33832305	33832306	rs770250170	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	9p13.3	UBE2R2	rs770250170-C	0.461214	5E-8	(208 ms)	0.0282553	[0.017-0.039] unit increase	Affymetrix [10000000] (imputed)	N
843	chr9	33832305	33832306	rs770250170	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	9p13.3	UBE2R2	rs770250170-C	0.461214	5E-8	(176 ms)	0.0278679	[0.017-0.039] unit increase	Affymetrix [10000000] (imputed)	N
843	chr9	33832305	33832306	rs770250170	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	9p13.3	UBE2R2	rs770250170-C	0.461214	5E-10	(196 ms)	0.0319383	[0.021-0.043] unit increase	Affymetrix [10000000] (imputed)	N
843	chr9	33832305	33832306	rs770250170	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	9p13.3	UBE2R2	rs770250170-C	0.461214	4E-9	(212 ms)	0.0306822	[0.02-0.042] unit increase	Affymetrix [10000000] (imputed)	N
843	chr9	33832305	33832306	rs770250170	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	9p13.3	UBE2R2	rs770250170-C	0.461214	3E-8	(224 ms)	0.0287795	[0.018-0.04] unit increase	Affymetrix [10000000] (imputed)	N
843	chr9	33832305	33832306	rs770250170	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	9p13.3	UBE2R2	rs770250170-C	0.461214	2E-9	(210 ms)	0.0303306	[0.019-0.041] unit increase	Affymetrix [10000000] (imputed)	N
843	chr9	33832305	33832306	rs770250170	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	9p13.3	UBE2R2	rs770250170-C	0.461214	2E-9	(200 ms)	0.0313799	[0.02-0.042] unit increase	Affymetrix [10000000] (imputed)	N
843	chr9	33832305	33832306	rs770250170	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	9p13.3	UBE2R2	rs770250170-C	0.461214	2E-9	(198 ms)	0.0310545	[0.02-0.042] unit increase	Affymetrix [10000000] (imputed)	N
843	chr9	33832305	33832306	rs770250170	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	9p13.3	UBE2R2	rs770250170-C	0.461214	2E-8	(206 ms)	0.0281043	[0.017-0.039] unit increase	Affymetrix [10000000] (imputed)	N
843	chr9	33832305	33832306	rs770250170	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	9p13.3	UBE2R2	rs770250170-C	0.461214	2E-8	(180 ms)	0.02937	[0.018-0.04] unit increase	Affymetrix [10000000] (imputed)	N
843	chr9	33832305	33832306	rs770250170	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	9p13.3	UBE2R2	rs770250170-C	0.461214	2E-8	(178 ms)	0.0291428	[0.018-0.04] unit increase	Affymetrix [10000000] (imputed)	N
843	chr9	33832305	33832306	rs770250170	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	9p13.3	UBE2R2	rs770250170-C	0.461214	1E-9	(202 ms)	0.0312176	[0.02-0.042] unit increase	Affymetrix [10000000] (imputed)	N
843	chr9	33832305	33832306	rs770250170	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	9p13.3	UBE2R2	rs770250170-C	0.461214	1E-8	(222 ms)	0.0296347	[0.019-0.041] unit increase	Affymetrix [10000000] (imputed)	N
843	chr9	33832305	33832306	rs770250170	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	9p13.3	UBE2R2	rs770250170-C	0.461214	1E-8	(216 ms)	0.0291841	[0.018-0.04] unit increase	Affymetrix [10000000] (imputed)	N
843	chr9	33832305	33832306	rs770250170	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	9p13.3	UBE2R2	rs770250170-C	0.461214	1E-8	(214 ms)	0.0293786	[0.018-0.04] unit increase	Affymetrix [10000000] (imputed)	N
843	chr9	33832305	33832306	rs770250170	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	9p13.3	UBE2R2	rs770250170-C	0.461214	1E-8	(188 ms)	0.0299346	[0.019-0.041] unit increase	Affymetrix [10000000] (imputed)	N
843	chr9	33832305	33832306	rs770250170	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	9p13.3	NR	rs770250170-I	0.53521	6E-13		0.015357	[0.011-0.02] SD unit increase	Affymetrix, Illumina [50282193] (imputed)	N
843	chr9	33832306	33832306	rs112691327	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	9p13.3	UBE2R2	rs112691327-C	0.534936	7E-11		0.015202	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
843	chr9	33836345	33836346	rs7468236	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9p13.3	NR	rs7468236-G	0.282822	1E-10				Affymetrix, Illumina [24588908] (imputed)	N
843	chr9	33837329	33837330	rs1749268	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	9p13.3	UBE2R2	rs1749268-C	0.594173	8E-47		0.032836568	[0.028-0.037] unit increase	Affymetrix [93095623] (imputed)	N
843	chr9	33880689	33880690	rs2050789	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	9p13.3		rs2050789-G	0.406335	3E-8		0.0193396	[0.012-0.026] unit increase	Illumina [13478928] (imputed)	N
843	chr9	33891378	33891379	rs10971767	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9p13.3	NR	rs10971767-C	0.64357	2E-12				Affymetrix, Illumina [21126107] (imputed)	N
843	chr9	33898822	33898823	rs62555930	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	9p13.3	NR	rs62555930-T	NR	5E-9		0.0384	[0.025-0.051] unit decrease	Affymetrix [9000000] (imputed)	N
843	chr9	33932337	33932338	rs307646	32653958	Cho HW	2020-07-11	J Bone Miner Metab	Association between non-Caucasian-specific ASCC1 gene polymorphism and osteoporosis and obesity in Korean postmenopausal women.	Osteoporosis	443 Korean ancestry cases, 2,223 Korean ancestry controls	NA	9p13.3	NR	rs307646-C	NR	4E-6		1.659	[1.337-2.059]	Affymetrix [NR]	N
843	chr9	33942929	33942930	rs307660	20351715	Liu Y	2010-03-30	Mol Psychiatry	Meta-analysis of genome-wide association data of bipolar disorder and major depressive disorder.	Bipolar disorder	4,387 European and unknown ancestry cases, 6,209 European and unknown ancestry controls	NA	9p13.3	UBE2R2, UBAP2, SNORD121B, SNORD121A	rs307660-?	NR	5E-6				Affymetrix [1769948] (imputed)	N
844	chr9	33956790	33956791	rs544169	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	9p13.3	UBAP2	rs544169-A	0.7305	9E-15		0.0022	[0.0016-0.0028] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
844	chr9	33956790	33956791	rs544169	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	9p13.3	UBAP2	rs544169-A	0.7362	2E-11		0.0024	[0.0016-0.0032] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
844	chr9	33971545	33971546	rs307680	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	9p13.3	UBAP2	rs307680-T	NR	2E-6		0.224782	[0.13-0.32] unit increase	Illumina [13520550] (imputed)	N
844	chr9	33978014	33978015	rs544957562	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		9p13.3	UBAP2	rs544957562-A	0.845581	9E-10		0.0123934	[0.0084-0.0164] unit increase	Affymetrix [12370749]	N
844	chr9	33993995	33993996	rs7019441	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	9p13.3	NR	rs7019441-?	NR	3E-10				Affymetrix [~ 8270000] (imputed)	N
844	chr9	33993995	33993996	rs7019441	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	9p13.3		rs7019441-?	NR	5E-10				NR [~ 8900000] (imputed)	N
844	chr9	33995403	33995404	rs10814057	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9p13.3	NR	rs10814057-T	0.72259	9E-14				Affymetrix, Illumina [24558453] (imputed)	N
844	chr9	33995403	33995404	rs10814057	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	9p13.3	NR	rs10814057-T	0.730371	8E-14		0.016268	[0.012-0.021] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
844	chr9	33995445	33995446	rs180850064	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	9p13.3	NR	rs180850064-?	NR	1E-6	(Native Hawaiian)	1.3692	[NR] unit increase	Illumina [up to 11892802] (imputed)	N
844	chr9	34003373	34003375	rs538358771	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	9p13.3	UBAP2	rs538358771-C	0.581984	8E-12		0.015990421	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
844	chr9	34003373	34003375	rs538358771	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	9p13.3	UBAP2	rs538358771-C	0.582046	1E-11		0.015487192	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
844	chr9	34011390	34011391	rs12555291	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	9p13.3	UBAP2	rs12555291-A	0.342303	6E-24		0.023794271	[0.019-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
844	chr9	34011390	34011391	rs12555291	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	9p13.3	UBAP2	rs12555291-A	0.342295	3E-20		0.021740276	[0.017-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
844	chr9	34011390	34011391	rs12555291	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	9p13.3	UBAP2	rs12555291-A	0.342387	3E-40		0.031159198	[0.027-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
844	chr9	34011390	34011391	rs12555291	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	9p13.3	UBAP2	rs12555291-A	0.342388	2E-37		0.03002654	[0.025-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
844	chr9	34025639	34025640	rs1758632	33290408	Ray D	2020-12-08	PLoS Genet	A powerful method for pleiotropic analysis under composite null hypothesis identifies novel shared loci between Type 2 Diabetes and Prostate Cancer.	Type 2 diabetes or prostate cancer (pleiotropy)	62,892 European ancestry T2D cases, 79,194 European ancestry PrCa cases, 659,536 European ancestry controls	NA	9p13.3	UBAP2	rs1758632-C	0.38	1E-12				Illumina [5041948] (imputed)	N
844	chr9	34025639	34025640	rs1758632	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	9p13.3	UBAP2	rs1758632-C	0.376593206821159	1E-9		0.0491	[0.033-0.065] unit decrease	NR [5035015] (imputed)	N
844	chr9	34030381	34030382	rs188795046	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	CTACK levels	3,631 Finnish ancestry individuals	NA	9p13.3	NR	rs188795046-G	NR	4E-6		0.4254	[0.25-0.6] SD units increase	NR [10700000] (imputed)	N
844	chr9	34039001	34039002	rs62558833	31826910	Lu Y	2019-12-11	Cancer Epidemiol Biomarkers Prev	Identification of novel loci and new risk variant in known loci for colorectal cancer risk in East Asians.	Colorectal cancer	23,572 East Asian ancestry cases, 48,700 East Asian ancestry controls	58,131 European ancestry cases, 67,347 European ancestry controls	9p13.3		rs62558833-T	NR	8E-8		1.05	[1.03-1.06]	Affymetrix, Illumina [up to 47000000] (imputed)	N
844	chr9	34039001	34039002	rs62558833	31826910	Lu Y	2019-12-11	Cancer Epidemiol Biomarkers Prev	Identification of novel loci and new risk variant in known loci for colorectal cancer risk in East Asians.	Colorectal cancer	23,572 East Asian ancestry cases, 48,700 East Asian ancestry controls	58,131 European ancestry cases, 67,347 European ancestry controls	9p13.3		rs62558833-T	0.5472	4E-7	(East Asian)	1.08	[1.05-1.11]	Affymetrix, Illumina [up to 47000000] (imputed)	N
844	chr9	34045013	34045014	rs747091	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	9p13.3	UBAP2	rs747091-T	0.440424	9E-13		0.0133146	[0.0097-0.017] unit decrease	NR [13737936] (imputed)	N
844	chr9	34046390	34046391	rs6476434	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	9p13.3	UBAP2	rs6476434-T	0.7336	7E-9		0.0615	[0.041-0.082] unit decrease	NR [7784415] (imputed)	N
844	chr9	34049778	34049779	rs10122495	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	9p13.3	NR	rs10122495-T	NR	3E-11		1.051	[1.04-1.07]	Affymetrix, Illumina [29235255] (imputed)	N
844	chr9	34049778	34049779	rs10122495	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	9p13.3	RN7SKP114	rs10122495-T	0.31	1E-8		1.05	[1.03-1.07]	Illumina [20370935] (imputed)	N
844	chr9	34050344	34050345	rs10453201	34450027	Boer CG	2021-08-24	Cell	Deciphering osteoarthritis genetics across 826,690 individuals from 9 populations.	Osteoarthritis	90,838 European, East Asian ancestry female cases, 192,697 European, East Asian ancestry female controls	NA	9p13.3		rs10453201-T	0.22	1E-8		1.05	[1.02-1.06]	Affymetrix, Illumina [NR] (imputed)	N
844	chr9	34057208	34057209	rs34756862	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	9p13.3	intergenic	rs34756862-T	0.3611	2E-17		0.03227135	[0.025-0.04] unit decrease	Affymetrix [~ 2500000] (imputed)	N
844	chr9	34057208	34057209	rs34756862	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	9p13.3	intergenic	rs34756862-T	0.3611	2E-13		0.02819336	[0.021-0.036] unit decrease	Affymetrix [~ 2500000] (imputed)	N
844	chr9	34057208	34057209	rs34756862	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	9p13.3	intergenic	rs34756862-T	0.3611	5E-13		0.02771473	[0.02-0.035] unit decrease	Affymetrix [~ 2500000] (imputed)	N
844	chr9	34062812	34062813	rs35158734	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	9p13.3		rs35158734-C	NR	5E-13		0.0205	[0.015-0.026] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
844	chr9	34062812	34062813	rs35158734	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	9p13.3		rs35158734-C	0.754319	4E-15		0.020818088	[0.016-0.026] unit increase	Affymetrix [93095623] (imputed)	N
844	chr9	34062812	34062813	rs35158734	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	9p13.3	NR	rs35158734-D	0.754148	4E-13		0.017751	[0.013-0.023] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
844	chr9	34065391	34065392	rs62558837	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	9p13.3		rs62558837-?	NR	5E-12				NR [~ 8900000] (imputed)	N
844	chr9	34065658	34065659	rs7853333	28437668	Jung J	2017-04-14	Psychiatry Res	Genome-wide association study of treatment response to venlafaxine XR in generalized anxiety disorder.	Venlafaxine response in generalised anxiety disorder (HAMA-A score reduction after 24 weeks)	98 European ancestry individuals	NA	9p13.3	intergenic	rs7853333-A	NR	4E-6				Illumina [266820] (imputed)	N
844	chr9	34071143	34071144	rs10758239	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	9p13.3		rs10758239-C	NR	3E-14		0.0163	[0.012-0.02] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
844	chr9	34071143	34071144	rs10758239	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9p13.3	NR	rs10758239-C	0.564173	1E-18				Affymetrix, Illumina [23472807] (imputed)	N
844	chr9	34071143	34071144	rs10758239	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	9p13.3	NR	rs10758239-C	0.544149	2E-18		0.016622	[0.013-0.02] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
844	chr9	34071540	34071541	rs7871764	19343178	Soranzo N	2009-04-03	PLoS Genet	Meta-analysis of genome-wide scans for human adult stature identifies novel Loci and associations with measures of skeletal frame size.	Height	12,611 European ancestry individuals	7,187 European ancestry individuals	9p13.3	WDR40A	rs7871764-?	0.44	2E-6		0.06	[0.03-0.09] s.d. increase	Illumina [229216]	N
844	chr9	34074475	34074476	rs12001437	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	9p13.3		rs12001437-C	NR	1E-8		0.0367	[0.024-0.049] unit increase	Affymetrix, Illumina [25845091] (imputed)	N
844	chr9	34074475	34074476	rs12001437	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	9p13.3	NR	rs12001437-C	0.3727	6E-13		0.0339	[0.025-0.043] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
844	chr9	34074475	34074476	rs12001437	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	9p13.3	NR	rs12001437-C	0.4071	4E-15		0.0301	[0.023-0.038] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
844	chr9	34074475	34074476	rs12001437	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	9p13.3	UBAP2	rs12001437-C	0.3722	3E-10		1.04	[1.03-1.06]	Affymetrix, Illumina [~ 27000000] (imputed)	N
844	chr9	34074986	34074987	rs55781253	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	9p13.3		rs55781253-A	NR	1E-8		0.0138	[0.0091-0.0185] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
844	chr9	34077902	34077903	rs78335699	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	9p13.3		rs78335699-A	0.190104	4E-17		0.02439965	[0.019-0.03] unit increase	Affymetrix [93095623] (imputed)	N
844	chr9	34077902	34077903	rs78335699	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	9p13.3		rs78335699-A	0.190088	2E-21		0.0241171	[0.019-0.029] unit increase	Affymetrix [93095623] (imputed)	N
845	chr9	34081330	34081331	rs62560863	33568662	Dashti HS	2021-02-10	Nat Commun	Genetic determinants of daytime napping and effects on cardiometabolic health.	Daytime nap	452,633 European ancestry individuals	541,333 European ancestry individuals	9p13.3	DCAF12, UBAP2	rs62560863-T		3E-10		0.0091	[0.0064-0.0118] unit increase	Affymetrix [13304133] (imputed)	N
845	chr9	34081330	34081331	rs62560863	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	9p13.3	UBAP2, DCAF12	rs62560863-C	0.9	3E-14		7.6	z-score increase	Affymetrix [4311822] (imputed)	N
845	chr9	34103039	34103044	rs61396116	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	9p13.3		rs61396116-G	NR	4E-8		0.0126	[0.0081-0.0171] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
845	chr9	34107504	34107505	rs11557154	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	9p13.3		rs11557154-T	NR	3E-14		0.0155	[0.012-0.019] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
845	chr9	34107504	34107505	rs11557154	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	9p13.3		rs11557154-T	NR	5E-21		0.0257	[0.02-0.031] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
845	chr9	34107504	34107505	rs11557154	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	9p13.3		rs11557154-T	NR	2E-17		0.0217	[0.017-0.027] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
845	chr9	34107504	34107505	rs11557154	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	9p13.3	DCAF12	rs11557154-T	0.13	3E-9		5.96	z-score increase	Affymetrix [4312306] (imputed)	N
845	chr9	34107504	34107505	rs11557154	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	9p13.3	NR	rs11557154-T	NR	5E-10		0.0231	[0.016-0.03] unit decrease	Affymetrix [9000000] (imputed)	N
845	chr9	34107504	34107505	rs11557154	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	9p13.3	NR	rs11557154-T	NR	1E-12		0.0252	[0.018-0.032] unit decrease	Affymetrix [9000000] (imputed)	N
845	chr9	34107504	34107505	rs11557154	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	9p13.3	NR	rs11557154-T	NR	1E-12		0.0265	[0.019-0.034] unit decrease	Affymetrix [9000000] (imputed)	N
845	chr9	34107504	34107505	rs11557154	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	9p13.3	NR	rs11557154-T	NR	4E-10		0.0223	[0.015-0.029] unit increase	Affymetrix [9000000] (imputed)	N
845	chr9	34107504	34107505	rs11557154	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	9p13.3	NR	rs11557154-T	NR	2E-10		0.0226	[0.016-0.03] unit increase	Affymetrix [9000000] (imputed)	N
845	chr9	34107504	34107505	rs11557154	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	9p13.3	NR	rs11557154-T	NR	1E-10		0.023	[0.016-0.03] unit decrease	Affymetrix [9000000] (imputed)	N
845	chr9	34107504	34107505	rs11557154	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	9p13.3	NR	rs11557154-T	NR	5E-21		0.0336	[0.027-0.041] unit decrease	Affymetrix [9000000] (imputed)	N
845	chr9	34107504	34107505	rs11557154	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	9p13.3	NR	rs11557154-T	NR	1E-9		0.0216	[0.015-0.029] unit increase	Affymetrix [9000000] (imputed)	N
845	chr9	34107504	34107505	rs11557154	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	9p13.3	DCAF12	rs11557154-T	0.127343	4E-22		0.03207357	[0.026-0.039] unit increase	Affymetrix [93095623] (imputed)	N
845	chr9	34107504	34107505	rs11557154	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	9p13.3	DCAF12	rs11557154-T	0.12733	5E-24		0.033471044	[0.027-0.04] unit increase	Affymetrix [93095623] (imputed)	N
845	chr9	34107504	34107505	rs11557154	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9p13.3	NR	rs11557154-T	0.185547	8E-32				Affymetrix, Illumina [23467995] (imputed)	N
845	chr9	34107504	34107505	rs11557154	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	9p13.3	NR	rs11557154-T	0.127576	3E-30		0.031988	[0.027-0.037] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
845	chr9	34107504	34107505	rs11557154	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	9p13.3		rs11557154-?	NR	4E-9				NR [~ 8900000] (imputed)	N
845	chr9	34107504	34107505	rs11557154	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	9p13.3	DCAF12	rs11557154-T	0.1277	2E-9		0.03189868	[0.021-0.042] unit decrease	Affymetrix [~ 2500000] (imputed)	N
845	chr9	34111001	34111002	rs10971921	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Colorectal cancer	6,581 European ancestry cases, 463,421 European ancestry controls, 8,305 East Asian ancestry cases, 159,386 East Asian ancestry controls	NA	9p13.3		rs10971921-A	NR	4E-9		0.0856	[0.057-0.114] unit increase	Affymetrix, Illumina [25843452] (imputed)	N
845	chr9	34111001	34111002	rs10971921	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	9p13.3	DCAF12	rs10971921-A	0.131708	4E-9		0.019818159	[0.013-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
845	chr9	34111001	34111002	rs10971921	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	9p13.3	NR	rs10971921-A	0.13125699999999996	7E-13		0.0137901	[0.01-0.018] unit increase	Affymetrix [16578495] (imputed)	N
845	chr9	34116082	34116083	rs10971930	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	9p13.3		rs10971930-C	NR	7E-10		0.0207	[0.014-0.027] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
845	chr9	34116082	34116083	rs10971930	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	9p13.3	DCAF12	rs10971930-T	0.872702	1E-10		0.00377716	[0.0026-0.0049] unit decrease	Affymetrix [13995440] (imputed)	N
845	chr9	34116082	34116083	rs10971930	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	9p13.3	DCAF12	rs10971930-C	0.12732	1E-15		0.026496846	[0.02-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
845	chr9	34116082	34116083	rs10971930	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	9p13.3	DCAF12	rs10971930-C	0.12736	2E-21		0.0314509	[0.025-0.038] unit increase	Affymetrix [93095623] (imputed)	N
845	chr9	34116082	34116083	rs10971930	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9p13.3	NR	rs10971930-C	0.199705	8E-19				Affymetrix, Illumina [24246363] (imputed)	N
845	chr9	34116082	34116083	rs10971930	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	9p13.3	NR	rs10971930-C	0.12774	2E-20		0.025283	[0.02-0.031] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
845	chr9	34116082	34116083	rs10971930	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9p13.3	NR	rs10971930-C	0.205919	2E-23				Affymetrix, Illumina [20825802] (imputed)	N
845	chr9	34116082	34116083	rs10971930	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	9p13.3	NR	rs10971930-C	0.12755	1E-22		0.028216	[0.023-0.034] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
845	chr9	34116082	34116083	rs10971930	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	9p13.3		rs10971930-?	NR	3E-22				NR [~ 8900000] (imputed)	N
845	chr9	34116082	34116083	rs10971930	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	9p13.3	DCAF12	rs10971930-C	0.128	8E-10		0.03281134	[0.022-0.043] unit decrease	Affymetrix [~ 2500000] (imputed)	N
845	chr9	34124859	34124860	rs2275003	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	9p13.3	NR	rs2275003-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
845	chr9	34129838	34129839	rs10814070	30323354	Lee JY	2018-10-15	Sci Rep	BRCA1/2-negative, high-risk breast cancers (BRCAX) for Asian women: genetic susceptibility loci and their potential impacts.	BRCA1/2-negative high-risk breast cancer	1,469 Korean ancestry cases, 5,979 Korean ancestry controls	NA	9p13.3	DCAF12	rs10814070-T	0.75	2E-6		1.26	[1.15-1.39]	Affymetrix, Illumina [3378933] (imputed)	N
845	chr9	34130434	34130435	rs61237993	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	9p13.3		rs61237993-A	NR	9E-12		0.0183	[0.013-0.024] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
845	chr9	34130434	34130435	rs61237993	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	9p13.3		rs61237993-A	NR	5E-16		0.0211	[0.016-0.026] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
845	chr9	34130434	34130435	rs61237993	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Testosterone levels	310,461 European ancestry individuals, 5,453 African ancestry individuals, 6,680 South Asian ancestry individuals	NA	9p13.3	NR	rs61237993-A	NR	3E-9		0.0221	[0.015-0.029] unit increase	Affymetrix [9000000] (imputed)	N
845	chr9	34130434	34130435	rs61237993	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	9p13.3	NR	rs61237993-A	0.12793299999999996	7E-23		0.0399573	[0.032-0.048] unit increase	Affymetrix [16580851] (imputed)	N
845	chr9	34130434	34130435	rs61237993	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	9p13.3	NR	rs61237993-A	0.127189	9E-10		0.0180937	[0.012-0.024] unit increase	Affymetrix [16583148] (imputed)	N
845	chr9	34130434	34130435	rs61237993	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	9p13.3	NR	rs61237993-A	0.12790199999999996	2E-15		0.0294017	[0.022-0.037] unit increase	Affymetrix [16585745] (imputed)	N
845	chr9	34130434	34130435	rs61237993	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	9p13.3	DCAF12, UBE2R2	rs61237993-G	0.654	2E-8		5.626	NR z score decrease	Illumina [26237160] (imputed)	N
845	chr9	34130434	34130435	rs61237993	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	9p13.3	DCAF12	rs61237993-G	0.666	4E-8		0.345	[0.11-0.58] ml/min/1.73m2 decrease	Affymetrix, Illumina [at least 5248638] (imputed)	N
845	chr9	34151462	34151463	rs10971957	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	9p13.3		rs10971957-?	NR	5E-12				NR [~ 8900000] (imputed)	N
845	chr9	34156237	34156238	rs7469124	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	9p13.3		rs7469124-A	0.612308	2E-10		0.014654457	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
845	chr9	34159045	34159046	rs186329844	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	CTACK levels	3,631 Finnish ancestry individuals	NA	9p13.3	NR	rs186329844-T	NR	2E-6		0.4069	[0.24-0.57] SD units decrease	NR [10700000] (imputed)	N
845	chr9	34191991	34191992	rs115540638	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fruit consumption	335,576 European ancestry individuals	NA	9p13.3	UBAP1, KIF24, NUDT2, KIAA1161, C9orf24	rs115540638-?	NR	4E-12		0.0203941	[0.015-0.026] unit increase	Affymetrix [25921788] (imputed)	N
845	chr9	34194053	34194054	rs11793208	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation-estimated plasminogen activator inhibitor-1 levels	6,149 African American individuals	NA	9p13.3	NR	rs11793208-G	0.8942	3E-8		430.389	[277.63-583.15] unit increase	Affymetrix, Illumina [12990252] (imputed)	N
846	chr9	34223552	34223553	rs4553000	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	9p13.3		rs4553000-T	NR	2E-8		0.0103	[0.0068-0.0138] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
846	chr9	34223552	34223553	rs4553000	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	9p13.3		rs4553000-?	NR	1E-7				NR [~ 8900000] (imputed)	N
846	chr9	34223552	34223553	rs4553000	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	NA	9p13.3	UBAP1	rs4553000-C	0.4861	8E-13		0.1464	[0.11-0.19] unit increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
846	chr9	34235328	34235329	rs10972012	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9p13.3	NR	rs10972012-A	0.343765	2E-10				Affymetrix, Illumina [22063850] (imputed)	N
846	chr9	34243683	34243684	rs961183	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Creatine kinase levels	106,080 Japanese ancestry individuals	NA	9p13.3	UBAP1	rs961183-?	NR	3E-8		0.02439	[0.016-0.033] unit decrease novel	Illumina [6108953] (imputed)	N
846	chr9	34252473	34252477	rs10565742	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	9p13.3		rs10565742-G	NR	5E-9		0.0141	[0.0094-0.0188] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
846	chr9	34318682	34318683	rs188915802	31417091	Kou I	2019-08-15	Nat Commun	Genome-wide association study identifies 14 previously unreported susceptibility loci for adolescent idiopathic scoliosis in Japanese.	Adolescent idiopathic scoliosis	5,327 Japanese ancestry cases, 73,884 Japanese ancestry controls	NA	9p13.3	KIF24	rs188915802-T	0.013	2E-9		1.66	[1.41-1.96]	Illumina [9332516] (imputed)	N
846	chr9	34328674	34328675	rs72733124	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	CTACK levels	3,631 Finnish ancestry individuals	NA	9p13.3	NR	rs72733124-C	NR	6E-8		0.3665	[0.23-0.5] SD units decrease	NR [10700000] (imputed)	N
847	chr9	34356358	34356359	rs10972076	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9p13.3	KIAA1161	rs10972076-T	0.625	2E-34	(Uncharacterized family 31 glucosidase KIAA1161, KIAA1161.8068.43.3)	0.31	[0.25-0.37] unit increase	Affymetrix [10572788] (imputed)	N
847	chr9	34368673	34368674	rs7861760	33607655	Imamura M	2021-02-19	Hum Mol Genet	Genome-Wide Association Studies Identify Two Novel Loci Conferring Susceptibility to Diabetic Retinopathy in Japanese Patients with Type 2 Diabetes.	Diabetic retinopathy in type 2 diabetes	5,532 Japanese ancestry cases, 5,565 Japanese ancestry controls	3,010 Japanese ancestry cases, 1,562 Japanese ancestry controls	9p13.3	NR	rs7861760-G	0.65	2E-7		1.14	[1.09-1.20]	Illumina [5790508] (imputed)	N
847	chr9	34370019	34370020	rs10758255	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	9p13.3	NR	rs10758255-T	0.429423	4E-8		0.038910925	[0.025-0.053] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
847	chr9	34382174	34382175	rs2381117	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	9p13.3		rs2381117-C	NR	2E-9		0.0158	[0.011-0.021] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
848	chr9	34509745	34509746	rs4879801	33125391	Hassler S	2020-10-30	PLoS Med	Clinicogenomic factors of biotherapy immunogenicity in autoimmune disease: A prospective multicohort study of the ABIRISK consortium.	Anti-drug antibodies in autoimmune disease (time to event)	457 European ancestry individuals	NA	9p13.3	DNAI1	rs4879801-?	NR	5E-7				Illumina [351824]	N
848	chr9	34553666	34553667	rs4363285	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	9p13.3		rs4363285-?	NR	1E-8				NR [~ 8900000] (imputed)	N
848	chr9	34554143	34554144	rs150248045	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels	18,590 European ancestry individuals	NA	9p13.3		rs150248045-?	NR	7E-6		0.13	[0.073-0.187] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
848	chr9	34561807	34561808	rs10814123	31902109	Li D	2020-01-04	Genes Genomics	Progressive effects of single-nucleotide polymorphisms on 16 phenotypic traits based on longitudinal data.	Physiological traits	up to 6,835 Korean ancestry individuals	NA	9p13.3	CNTFR	rs10814123-T	0.363	8E-6	(waist)	0.0552	NR unit decrease	Affymetrix [305158]	N
848	chr9	34572814	34572815	rs1571401	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	9p13.3	CNTFR	rs1571401-C	0.88	3E-18	(CNTFR, 14101_2_3)	0.31353545	[0.24-0.38] unit increase	Illumina [> 1000000] (imputed)	N
848	chr9	34581818	34581819	rs13290451	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	9p13.3		rs13290451-T	NR	1E-9		0.0117	[0.008-0.0154] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
848	chr9	34581818	34581819	rs13290451	31417091	Kou I	2019-08-15	Nat Commun	Genome-wide association study identifies 14 previously unreported susceptibility loci for adolescent idiopathic scoliosis in Japanese.	Adolescent idiopathic scoliosis	5,327 Japanese ancestry cases, 73,884 Japanese ancestry controls	NA	9p13.3	NR	rs13290451-T	0.54	2E-9		1.13	[1.09-1.18]	Illumina [9332516] (imputed)	N
848	chr9	34581818	34581819	rs13290451	31417091	Kou I	2019-08-15	Nat Commun	Genome-wide association study identifies 14 previously unreported susceptibility loci for adolescent idiopathic scoliosis in Japanese.	Adolescent idiopathic scoliosis	5,004 Japanese ancestry female cases, 33,679 Japanese ancestry female controls	NA	9p13.3	CNTFR-AS1	rs13290451-T	0.537097	2E-10		1.16	[1.11-1.21]	Illumina [9332516] (imputed)	N
848	chr9	34588005	34588006	rs6476455	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	9p13.3	C9orf23	rs6476455-?	NR	6E-6	(LPC 22:6)	0.15059473	[0.086-0.216] unit increase	Affymetrix [at least 2500000] (imputed)	N
848	chr9	34593085	34593086	rs10972159	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CNTFR	5,367 Icelandic ancestry individuals	NA	9p13.3		rs10972159-A	0.02917	4E-32		0.625175	[0.52-0.73] unit decrease	Illumina [7506463] (imputed)	N
848	chr9	34593085	34593086	rs10972159	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CNTFR	5,364 Icelandic ancestry individuals	NA	9p13.3		rs10972159-A	0.02917	7E-28		0.580789	[0.48-0.68] unit decrease	Illumina [7506463] (imputed)	N
848	chr9	34593085	34593086	rs10972159	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9p13.3	CNTFR	rs10972159-A	0.018	1E-13	(Ciliary neurotrophic factor receptor subunit alpha, CNTFR.14101.2.3)	0.7	[0.52-0.88] unit decrease	Affymetrix [10572788] (imputed)	N
848	chr9	34594283	34594284	rs73645429	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	9p13.3	CNTFR	rs73645429-G	0.9728125	8E-15	(CNTFR, 2711_6_2)	0.56226844	[0.42-0.7] unit increase	Illumina [> 1000000] (imputed)	N
849	chr9	34622388	34622389	rs3808869	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Hypertension	810,865 European ancestry individuals	354,096 European ancestry individuals	9p13.3		rs3808869-A	0.4837	2E-8		5.60999	z score increase	Affymetrix, Illumina [239843] (imputed)	N
849	chr9	34622388	34622389	rs3808869	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	9p13.3		rs3808869-A	0.4829	3E-11		0.091593295	[0.064-0.119] mmHg increase	Affymetrix, Illumina [242866] (imputed)	N
849	chr9	34622388	34622389	rs3808869	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	9p13.3	NR	rs3808869-C	0.520884	5E-9		0.0166154	[0.011-0.023] unit increase	Affymetrix [16577313] (imputed)	N
849	chr9	34623717	34623718	rs10814129	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	9p13.3	DCTN3	rs10814129-A	0.1654	1E-10		0.0165	[0.012-0.021] unit decrease	Affymetrix [18391927] (imputed)	N
849	chr9	34647801	34647802	rs41274865	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL11RA	5,354 Icelandic ancestry individuals	NA	9p13.3		rs41274865-C	0.07302	7E-50		0.51037	[0.44-0.58] unit increase	Illumina [7506463] (imputed)	N
849	chr9	34648087	34648088	rs41274867	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	9p13.3	NR	rs41274867-G	0.92796875	6E-9	(CNTFR, 14101_2_3)	0.26504537	[0.18-0.35] unit increase	Illumina [> 1000000] (imputed)	N
849	chr9	34648087	34648088	rs41274867	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	9p13.3	NR	rs41274867-G	0.92796875	1E-26	(IL11RA, 3814_63_1)	0.499066	[0.41-0.59] unit decrease	Illumina [> 1000000] (imputed)	N
849	chr9	34648087	34648088	rs41274867	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	9p13.3	NR	rs41274867-G	0.92796875	1E-11	(CCL27, 2192_63_10)	0.31929025	[0.23-0.41] unit increase	Illumina [> 1000000] (imputed)	N
849	chr9	34649441	34649442	rs2070074	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CCL27	5,348 Icelandic ancestry individuals	NA	9p13.3		rs2070074-G	0.09344	9E-26		0.317418	[0.26-0.38] unit decrease	Illumina [7506463] (imputed)	N
849	chr9	34649441	34649442	rs2070074	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	9p13.3	NR	rs2070074-A	0.90703125	6E-24	(IL11RA, 3814_63_1)	0.41594988	[0.34-0.5] unit decrease	Illumina [> 1000000] (imputed)	N
849	chr9	34649441	34649442	rs2070074	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	9p13.3	NR	rs2070074-A	0.90703125	1E-14	(CCL27, 2192_63_10)	0.32129216	[0.24-0.4] unit increase	Illumina [> 1000000] (imputed)	N
849	chr9	34649441	34649442	rs2070074	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	CTACK levels	3,631 Finnish ancestry individuals	NA	9p13.3	IL11RA	rs2070074-G	NR	2E-32		0.4467	[0.37-0.52] SD units decrease	NR [10700000] (imputed)	N
849	chr9	34656478	34656479	rs11575578	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9p13.3	IL11RA	rs11575578-A	0.068	4E-26	(Interleukin-11 receptor subunit alpha, IL11RA.3814.63.1)	0.51	[0.41-0.61] unit increase	Affymetrix [10572788] (imputed)	N
849	chr9	34660863	34660864	rs11575580	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9p13.3		rs11575580-?	NR	9E-14				NR [~ 8900000] (imputed)	N
849	chr9	34675356	34675357	rs72737145	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PAPLN	5,361 Icelandic ancestry individuals	NA	9p13.3		rs72737145-A	0.01353	7E-13		0.102905	[0.075-0.131] unit increase	Illumina [7506463] (imputed)	N
849	chr9	34688032	34688033	rs6476459	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	9p13.3	NR	rs6476459-T	0.432406	2E-9		0.042485468	[0.029-0.056] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
849	chr9	34691534	34691535	rs2233873	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CNTFR	5,367 Icelandic ancestry individuals	NA	9p13.3		rs2233873-C	0.06551	1E-12		0.261566	[0.19-0.33] unit decrease	Illumina [7506463] (imputed)	N
849	chr9	34708438	34708439	rs78568490	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mumps	31,227 European ancestry cases, 54,153 European ancestry controls	NA	9p13.3	NR	rs78568490-?	NR	9E-6		1.0885	[0.61-1.57] unit increase	Illumina [at least 560000] (imputed)	N
849	chr9	34710259	34710260	rs2812378	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Rheumatoid arthritis	15,523 European ancestry cases, 22,308 European ancestry controls	NA	9p13.3	CCL21	rs2812378-G	0.334	4E-11		1.1194886		Illumina [252970]	N
849	chr9	34710259	34710260	rs2812378	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Celiac disease	11,489 European ancestry cases, 22,308 European ancestry controls	NA	9p13.3	CCL21	rs2812378-G		5E-6		1.091308		Illumina [252970]	N
849	chr9	34710259	34710260	rs2812378	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Autoimmune traits (pleiotropy)	11,489 European ancestry cases with celiac disease, 15,523 European ancestry cases with rheumatoid arthritis, 3,477 European ancestry cases with systemic sclerosis, 6,670 European ancestry cases with type 1 diabetes, 22,308 European ancestry controls	NA	9p13.3	CCL21	rs2812378-G	NA	1E-9				Illumina [252970]	N
849	chr9	34710259	34710260	rs2812378	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	9p13.3	CCL21, FAM205A	rs2812378-?	NR	6E-9	(subset analysis)			Illumina [130052]	N
849	chr9	34710259	34710260	rs2812378	24532676	Kim K	2014-02-14	Ann Rheum Dis	High-density genotyping of immune loci in Koreans and Europeans identifies eight new rheumatoid arthritis risk loci.	Rheumatoid arthritis (ACPA-positive)	2,234 Korean ancestry cases, 7,065 Korean ancestry controls, 10,288 European ancestry cases, 35,502 European ancestry controls	NA	9p13.3	CCL21	rs2812378-G	0.34	5E-11		1.12	[1.08-1.16]	Illumina [133816] (imputed)	N
849	chr9	34710259	34710260	rs2812378	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis (ACPA-positive)	up to 9,585 European ancestry cases, up to 33,742 European ancestry controls	NA	9p13.3	CCL21	rs2812378-G	0.34	1E-9		1.1473	(Immunochip only)	Illumina [129464] (imputed)	N
849	chr9	34710259	34710260	rs2812378	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis	up to 13,838 European ancestry cases, up to 33,742 European ancestry controls	NA	9p13.3	CCL21	rs2812378-G	0.34	9E-9		1.1167	(Immunochip only)	Illumina [129464] (imputed)	N
849	chr9	34710259	34710260	rs2812378	18794853	Raychaudhuri S	2008-09-14	Nat Genet	Common variants at CD40 and other loci confer risk of rheumatoid arthritis.	Rheumatoid arthritis	3,393 European ancestry cases, 12,460 European ancestry controls	3,929 European ancestry cases, 5,807 European ancestry controls	9p13.3	CCL21	rs2812378-G	0.34	3E-8		1.12	[NR]	Affymetrix, Illumina [at least 315971] (imputed)	N
849	chr9	34710337	34710338	rs11574914	33310728	Ha E	2020-12-11	Ann Rheum Dis	Large-scale meta-analysis across East Asian and European populations updated genetic architecture and variant-driven biology of rheumatoid arthritis, identifying 11 novel susceptibility loci.	Rheumatoid arthritis	14,361 European ancestry cases, 43,923 European ancestry controls, 8,267 East Asian ancestry cases, 244,741 East Asian ancestry controls	NA	9p13.3		rs11574914-A	NR	1E-14		1.12	[1.09-1.16]	NR [13810676] (imputed)	N
849	chr9	34710337	34710338	rs11574914	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9p13.3	NR	rs11574914-A	0.293748	1E-12				Affymetrix, Illumina [23472807] (imputed)	N
849	chr9	34710337	34710338	rs11574914	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	9p13.3	CCL19, CCL21	rs11574914-A	NR	2E-13		0.114928	[0.085-0.145] unit increase	Illumina [8380626] (imputed)	N
849	chr9	34710337	34710338	rs11574914	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	9p13.3	CCL19, CCL21	rs11574914-A	0.33	1E-13	(EA)	0.11847	[0.087-0.15] unit increase	Illumina [8380626] (imputed)	N
849	chr9	34710337	34710338	rs11574914	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	9p13.3	CCL19, CCL21	rs11574914-A	0.33	2E-15	(EA)	1.13	[1.09-1.16]	Affymetrix, Illumina [up to 9739303] (imputed)	N
849	chr9	34710337	34710338	rs11574914	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	9p13.3	CCL19, CCL21	rs11574914-A	0.26	3E-15		1.12	[1.09-1.15]	Affymetrix, Illumina [up to 9739303] (imputed)	N
849	chr9	34711634	34711635	rs12348523	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	9p13.3		rs12348523-?	NR	2E-8				NR [~ 8900000] (imputed)	N
850	chr9	34741839	34741840	rs200659638	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Granulocyte-colony stimulating factor levels	7,904 Finnish ancestry individuals	NA	9p13.3	NR	rs200659638-C		3E-6		0.2681	[0.16-0.38] SD units increase	NR [10700000] (imputed)	N
850	chr9	34743680	34743681	rs951005	20453842	Stahl EA	2010-05-09	Nat Genet	Genome-wide association study meta-analysis identifies seven new rheumatoid arthritis risk loci.	Rheumatoid arthritis	5,539 European ancestry cases, 20,169 European ancestry controls	6,768 European ancestry cases, 8,806 European ancestry controls	9p13.3	CCL21	rs951005-A	0.84	4E-10		1.19	[NR]	Affymetrix, Illumina [~ 2716259] (imputed)	N
850	chr9	34755358	34755359	rs11515363	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	9p13.3	CCL21	rs11515363-G	0.7446875	2E-10	(CCL21, 2516_57_3)	0.18119504	[0.13-0.24] unit increase	Illumina [> 1000000] (imputed)	N
850	chr9	34766706	34766707	rs558830051	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	9p13.3	FAM205A, FAM205BP	rs558830051-?	NR	4E-15		0.11583145	[0.087-0.145] unit decrease	Illumina [27896057] (imputed)	N
850	chr9	34767653	34767654	rs12350154	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	9p13.3	NR	rs12350154-?	NR	7E-6		0.0558	[0.031-0.08] unit increase	Illumina [at least 560000] (imputed)	N
850	chr9	34768594	34768595	rs577442	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	9p13.3	CCL19	rs577442-?	NR	9E-6	(5-hydroxyindoleacetic acid)	0.7764797	[0.43-1.12] unit decrease	Affymetrix [at least 2500000] (imputed)	N
850	chr9	34771874	34771875	rs277580	30850646	Tziotzios C	2019-03-08	Nat Commun	Genome-wide association study in frontal fibrosing alopecia identifies four susceptibility loci including HLA-B*07:02.	Frontal fibrosing alopecia	1,016 European ancestry cases, 4,145 European ancestry controls		9p13.3	NR	rs277580-G	0.837	3E-6		1.44	[1.24-1.68]	Illumina [~ 8000000] (imputed)	N
850	chr9	34801592	34801593	rs7018860	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	9p13.3		rs7018860-A	NR	8E-10		0.0104	[0.0071-0.0137] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
850	chr9	34840367	34840376	rs112103921	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	9p13.3	FAM205B	rs112103921-A	0.405241	2E-10		0.014367997	[0.0099-0.0188] unit increase	Affymetrix [93095623] (imputed)	N
850	chr9	34840367	34840376	rs112103921	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	9p13.3	FAM205B	rs112103921-A	0.405228	5E-9		0.013181941	[0.0088-0.0176] unit increase	Affymetrix [93095623] (imputed)	N
850	chr9	34845983	34845984	rs12339911	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9p13.3	NR	rs12339911-A	0.551278	1E-10				Affymetrix, Illumina [19872809] (imputed)	N
850	chr9	34853136	34853137	rs7046269	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	9p13.3		rs7046269-?	NR	6E-8				NR [~ 8900000] (imputed)	N
851	chr9	34889443	34889444	rs276666	29785011	Zhu Z	2018-05-21	Nat Genet	A genome-wide cross-trait analysis from UK Biobank highlights the shared genetic architecture of asthma and allergic diseases.	Asthma or allergic disease (pleiotropy)	14,085 European asthma cases, 25,685 European ancestry allergic diseases cases, 76,768 European ancestry controls	NA	9p13.3	LOC101927770, ZNF217	rs276666-?	NR	8E-11		1.08		NR [74888535] (imputed)	N
851	chr9	34942544	34942545	rs7864127	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	9p13.3	NR	rs7864127-T	0.470179	3E-8		0.039278354	[0.025-0.053] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
851	chr9	34972351	34972352	rs181962423	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Epithelial ovarian cancer	1,112 White British ancestry cases, 147,944 White British ancestry controls	NA	9p13.3		rs181962423-?	NR	8E-6		2.69781	[2.26-3.13]	NR [666300]	N
851	chr9	34972765	34972766	rs147128865	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Granulocyte-colony stimulating factor levels	7,904 Finnish ancestry individuals	NA	9p13.3	NR	rs147128865-C		5E-6		0.27	[0.15-0.39] SD units decrease	NR [10700000] (imputed)	N
851	chr9	34984974	34984975	rs17293327	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	9p13.3	NR	rs17293327-?	NR	2E-6		4.712	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
851	chr9	34992073	34992074	rs4879848	29503163	Yu H	2018-03-01	Lancet Psychiatry	Five novel loci associated with antipsychotic treatment response in patients with schizophrenia: a genome-wide association study.	Response to quetiapine in schizophrenia	386 Han Chinese ancestry cases	NA	9p13.3	DNAJB5	rs4879848-T	NR	6E-6		8.8412	[5.07-12.61] unit decrease	Illumina [6097251] (imputed)	N
852	chr9	35014433	35014434	rs35565997	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	9p13.3	SYF2P2	rs35565997-C	0.794504	4E-12		0.017694	[0.012-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
852	chr9	35014433	35014434	rs35565997	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	9p13.3	SYF2P2	rs35565997-C	0.794464	2E-11		0.019219838	[0.014-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
852	chr9	35020435	35020436	rs2802383	29503163	Yu H	2018-03-01	Lancet Psychiatry	Five novel loci associated with antipsychotic treatment response in patients with schizophrenia: a genome-wide association study.	Response to quetiapine in schizophrenia	386 Han Chinese ancestry cases	NA	9p13.3	C9orf131	rs2802383-G	NR	8E-7		9.507	[5.8-13.21] unit decrease	Illumina [6097251] (imputed)	N
852	chr9	35034997	35034998	rs808187	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9p13.3	NR	rs808187-A	0.570729	9E-17				Affymetrix, Illumina [24588908] (imputed)	N
852	chr9	35035122	35035123	rs1634951	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	9p13.3	NR	rs1634951-T	0.715079	8E-13		0.015257	[0.011-0.019] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
852	chr9	35037426	35037427	rs10706632	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	9p13.3	C9orf131	rs10706632-GA	0.23095	6E-11		0.017254902	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
852	chr9	35040448	35040449	rs679787	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9p13.3	NR	rs679787-T	0.30054	4E-11				Affymetrix, Illumina [17210439] (imputed)	N
852	chr9	35041603	35041604	rs10972297	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9p13.3	NR	rs10972297-T	0.263092	2E-12				Affymetrix, Illumina [24246363] (imputed)	N
852	chr9	35051268	35051269	rs642296	29503163	Yu H	2018-03-01	Lancet Psychiatry	Five novel loci associated with antipsychotic treatment response in patients with schizophrenia: a genome-wide association study.	Response to quetiapine in schizophrenia	386 Han Chinese ancestry cases	NA	9p13.3	VCP	rs642296-T	NR	3E-6		9.0135	[5.31-12.72] unit decrease	Illumina [6097251] (imputed)	N
852	chr9	35052855	35052856	rs507403	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	9p13.3		rs507403-?	NR	1E-10				NR [~ 8900000] (imputed)	N
852	chr9	35060301	35060302	rs684562	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9p13.3	NR	rs684562-C	0.6116	3E-11				Affymetrix, Illumina [23467995] (imputed)	N
852	chr9	35074916	35074917	rs587118	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9p13.3	NR	rs587118-C	0.387127	2E-11				Affymetrix, Illumina [20825802] (imputed)	N
852	chr9	35079360	35079361	rs504082	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	9p13.3	FANCG	rs504082-T	0.71557	3E-13		0.018093323	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
852	chr9	35079360	35079361	rs504082	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	9p13.3	NR	rs504082-T	0.712873	2E-17		0.017183	[0.013-0.021] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
852	chr9	35079360	35079361	rs504082	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	9p13.3	NR	rs504082-G	0.284867	3E-12		0.014789	[0.011-0.019] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
852	chr9	35081094	35081095	rs595655	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	9p13.3	FANCG	rs595655-A	0.764494	3E-20		0.024270356	[0.019-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
852	chr9	35081094	35081095	rs595655	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	9p13.3	FANCG	rs595655-A	0.764391	9E-18		0.022730963	[0.018-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
852	chr9	35085145	35085146	rs546982	33824429	Fjukstad KK	2021-04-06	Pharmacogenomics J	Genetic variants associated with cardiometabolic abnormalities during treatment with selective serotonin reuptake inhibitors: a genome-wide association study.	Triglyceride levels x SSRI levels (escitalopram or citalopram) interaction in schizophrenia or bipolar disorder	181 European ancestry individuals	NA	9p13.3	PIGO	rs546982-A	NR	8E-6		2.08156	[1.2-2.96] unit decrease	Illumina [NR] (imputed)	N
852	chr9	35085145	35085146	rs546982	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	9p13.3	NR	rs546982-G	0.538861	5E-12		0.013377	[0.0096-0.0172] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
852	chr9	35086027	35086028	rs576376	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	9p13.3	NR	rs576376-C	0.778041	7E-14		0.016365	[0.012-0.021] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
852	chr9	35086027	35086028	rs576376	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Corpus callosum central volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	9p13.3	NR	rs576376-?		6E-6				Illumina [4322238] (imputed)	N
852	chr9	35088141	35088142	rs527459	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	9p13.3	NR	rs527459-?	NR	4E-6		4.622	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
852	chr9	35093019	35093020	rs568300	29503163	Yu H	2018-03-01	Lancet Psychiatry	Five novel loci associated with antipsychotic treatment response in patients with schizophrenia: a genome-wide association study.	Response to quetiapine in schizophrenia	386 Han Chinese ancestry cases	NA	9p13.3	PIGO	rs568300-T	NR	9E-6		8.421	[4.76-12.08] unit decrease	Illumina [6097251] (imputed)	N
852	chr9	35103721	35103722	rs630961	29503163	Yu H	2018-03-01	Lancet Psychiatry	Five novel loci associated with antipsychotic treatment response in patients with schizophrenia: a genome-wide association study.	Response to quetiapine in schizophrenia	386 Han Chinese ancestry cases	NA	9p13.3	KIAA1539	rs630961-C	NR	9E-6		8.3966	[4.74-12.05] unit decrease	Illumina [6097251] (imputed)	N
852	chr9	35112101	35112102	rs4127857	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	9p13.3		rs4127857-A	NR	5E-10		0.0151	[0.01-0.02] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
853	chr9	35141704	35141705	rs10972341	19851299	Johansson A	2009-10-22	Obesity (Silver Spring)	Linkage and genome-wide association analysis of obesity-related phenotypes: association of weight with the MGAT1 gene.	Weight	Up to 3,925 European individuals	NA	9p13.3	NR	rs10972341-G	0.60	9E-6	(males)	2.32	[NR] kg increase	Illumina [318237]	N
853	chr9	35231046	35231047	rs10972390	30319691	Liu C	2018-09-24	Front Genet	Genome-Wide Association and Mechanistic Studies Indicate That Immune Response Contributes to Alzheimer's Disease Development.	Cognitive impairment test score	235 early mild cognitive impairment cases, 249 late mild cognitive impairment cases, 47 Alzheimer's disease cases, 281 controls.	NA	9p13.3	Intergenic	rs10972390-?		1E-6		2.689521	[NR] unit increase	Illumina [575353]	N
854	chr9	35269818	35269819	rs10121009	21812969	Liu X	2011-08-03	BMC Med Genet	Genome-wide association study identifies candidate genes for Parkinson's disease in an Ashkenazi Jewish population.	Parkinson's disease	268 Ashkenazi Jewish cases, 178 Ashkenazi Jewish controls	1,782 European ancestry cases, 1,658 European ancestry controls	9p13.3	UNC13B	rs10121009-A	0.21	3E-6				Illumina [525124]	N
854	chr9	35343555	35343556	rs17296428	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on highest math class (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	9p13.3		rs17296428-?	NR	4E-8				NR [NR]	N
854	chr9	35343555	35343556	rs17296428	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on Townsend deprivation index (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	9p13.3		rs17296428-?	NR	3E-8				NR [NR]	N
854	chr9	35387165	35387166	rs1927962	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on cognitive performance (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	9p13.3		rs1927962-?	NR	5E-8				NR [NR]	N
855	chr9	35397165	35397166	rs41276043	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9p13.3	NR	rs41276043-G	0.01045	1E-9	(SBDS)	0.06768	NR unit increase	Illumina [1671387] (imputed)	N
855	chr9	35507289	35507290	rs10814247	25903422	Yin X	2015-04-23	Nat Commun	Genome-wide meta-analysis identifies multiple novel associations and ethnic heterogeneity of psoriasis susceptibility.	Psoriasis	3,496 European ancestry cases, 5,186 European ancestry controls, 1,588 Chinese ancestry cases, 3,546 Chinese ancestry controls	5,134 European ancestry cases, 5,633 European ancestry controls, 5,151 Chinese ancestry cases, 5,152 Chinese ancestry controls	9p13.3	RUSC2	rs10814247-G	0.385	4E-6		1.08	[1.05-1.12]	Illumina [up to 4778154] (imputed)	N
855	chr9	35518996	35518997	rs4879901	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	9p13.3	NR	rs4879901-C	NR	8E-6		1.0526316	[NR]	Illumina [7158791] (imputed)	N
856	chr9	35563360	35563361	rs75679360	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9p13.3	NR	rs75679360-A	0.04181	2E-8	(PGD)	0.2418	NR unit increase	Illumina [1671387] (imputed)	N
856	chr9	35610911	35610912	rs4879913	25387704	Malone SM	2014-12-01	Psychophysiology	Heritability and molecular-genetic basis of resting EEG activity: a genome-wide association study.	Electroencephalogram traits	2,383 European ancestry adolescents and 1,643 European ancestry adults from 1,613 families	NA	9p13.3	CD72	rs4879913-?	NR	2E-6	(Alpha power, Cz)	0.103	[0.06-0.146] unit decrease	Illumina [527829]	N
856	chr9	35615895	35615896	rs869487	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	9p13.3	NR	rs869487-C	0.781848	4E-10		0.01465	[0.01-0.019] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
856	chr9	35648949	35648950	rs3138083	23648065	Low SK	2013-05-04	Cancer Sci	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (paclitaxel)	218 Japanese ancestry cases, 364 Japanese controls	NA	9p13.3	SIT1	rs3138083-A	0.117	4E-6	(Allelic model)	2.136	[1.551-2.942]	Illumina [733202]	N
857	chr9	35661242	35661243	rs35234337	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	9p13.3	NR	rs35234337-C	0.742351	3E-8		0.00553933	[0.0037-0.0074] unit increase	Affymetrix [16582909] (imputed)	N
857	chr9	35661242	35661243	rs35234337	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	9p13.3	NR	rs35234337-C	0.74254	5E-8		0.00699689	[0.0044-0.0096] unit increase	Affymetrix [16582621] (imputed)	N
857	chr9	35661242	35661243	rs35234337	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	9p13.3	NR	rs35234337-C	0.742351	2E-11		0.00721699	[0.0051-0.0093] unit increase	Affymetrix [16582965] (imputed)	N
857	chr9	35661242	35661243	rs35234337	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	9p13.3	NR	rs35234337-C	0.74254	2E-8		0.00760759	[0.0048-0.0104] unit increase	Affymetrix [16582614] (imputed)	N
857	chr9	35664623	35664624	rs1361338	34737425	Mansour Aly D	2021-11-04	Nat Genet	Genome-wide association analyses highlight etiological differences underlying newly defined subtypes of diabetes.	Severe insulin-deficient type 2 diabetes	1,193 Scandinavian ancestry cases, 2,744 Scandinavian ancestry controls	NA	9p13.3	CCDC107, ARHGEF39	rs1361338-A	0.489	7E-6		1.262	[1.14 - 1.397]	Illumina [5398302] (imputed)	N
857	chr9	35681367	35681368	rs4879924	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	9p13.3	CD72	rs4879924-T	0.883125	5E-6	(CD72, 7009_8_3)	0.17696649	[0.1-0.25] unit decrease	Illumina [> 1000000] (imputed)	N
857	chr9	35686406	35686407	rs1243872	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	9p13.3	NR	rs1243872-T	0.54	1E-8		0.0106	[0.0069-0.0143] unit increase	NR [NR]	N
857	chr9	35687555	35687556	rs3793537	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	9p13.3	TPM2	rs3793537-C	0.292825	2E-17		0.02065963	[0.016-0.025] unit increase	Affymetrix [93095623] (imputed)	N
857	chr9	35687555	35687556	rs3793537	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	9p13.3	TPM2	rs3793537-C	0.292761	3E-12		0.017224822	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
857	chr9	35687555	35687556	rs3793537	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9p13.3	NR	rs3793537-C	0.295123	3E-22				Affymetrix, Illumina [24649327] (imputed)	N
857	chr9	35687555	35687556	rs3793537	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	9p13.3	NR	rs3793537-C	0.290389	2E-22		0.019834	[0.016-0.024] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
857	chr9	35687555	35687556	rs3793537	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	9p13.3		rs3793537-?	NR	3E-17				NR [~ 8900000] (imputed)	N
857	chr9	35690309	35690310	rs2756892	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	9p13.3		rs2756892-T	NR	7E-16		0.0197	[0.015-0.024] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
857	chr9	35690309	35690310	rs2756892	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	9p13.3	TPM2	rs2756892-T	0.270996	5E-19		0.022373538	[0.017-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
857	chr9	35693159	35693160	rs10972561	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9p13.3	NR	rs10972561-T	0.227153	1E-19				Affymetrix, Illumina [24588908] (imputed)	N
857	chr9	35693159	35693160	rs10972561	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	9p13.3	NR	rs10972561-T	0.271893	4E-23		0.020373	[0.016-0.024] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
857	chr9	35693159	35693160	rs10972561	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9p13.3	NR	rs10972561-T	0.240978	8E-21				Affymetrix, Illumina [23472807] (imputed)	N
857	chr9	35700836	35700837	rs4879926	23967269	Kim JH	2013-08-13	PLoS One	A genome-wide association study of total serum and mite-specific IgEs in asthma patients.	IgE levels in asthmatics	877 Korean ancestry cases	NA	9p13.3	TLN1	rs4879926-?		8E-6				Illumina [442089]	N
857	chr9	35705758	35705759	rs11541908	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	9p13.3	TLN1	rs11541908-A	0.278541	8E-17		0.02056785	[0.016-0.025] unit increase	Affymetrix [93095623] (imputed)	N
857	chr9	35705758	35705759	rs11541908	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	9p13.3	NR	rs11541908-A	0.277246	5E-22		0.020421	[0.016-0.025] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
857	chr9	35707053	35707054	rs741917	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	9p13.3	TLN1	rs741917-T	0.275895	7E-14		0.0186952	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
857	chr9	35711805	35711806	rs2249250	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	9p13.3		rs2249250-T	NR	1E-9		0.0124	[0.0085-0.0163] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
857	chr9	35711805	35711806	rs2249250	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	9p13.3	TLN1	rs2249250-T	0.682165	8E-25		0.024875516	[0.02-0.03] unit increase	Affymetrix [93095623] (imputed)	N
857	chr9	35711805	35711806	rs2249250	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	9p13.3	TLN1	rs2249250-G	0.317401	7E-10		0.014631599	[0.01-0.0193] unit decrease	Affymetrix [93095623] (imputed)	N
857	chr9	35711805	35711806	rs2249250	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9p13.3	NR	rs2249250-T	0.663284	3E-13				Affymetrix, Illumina [23467995] (imputed)	N
857	chr9	35716065	35716066	rs2737273	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	9p13.3	NR	rs2737273-C	0.688446	5E-14		0.015215	[0.011-0.019] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
857	chr9	35716065	35716066	rs2737273	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	9p13.3	TLN1	rs2737273-C	0.6878	3E-10		0.02451837	[0.017-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
857	chr9	35726820	35726821	rs7873822	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	9p13.3		rs7873822-T	NR	7E-13		0.016	[0.012-0.02] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
857	chr9	35726820	35726821	rs7873822	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	9p13.3		rs7873822-?	NR	1E-10		0.0143036	[0.0099-0.0187] unit increase	Affymetrix [20259828] (imputed)	N
857	chr9	35731560	35731564	rs147613416	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	9p13.3		rs147613416-G	NR	2E-8		0.0114	[0.0075-0.0153] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
857	chr9	35734955	35734956	rs10814274	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Tumor necrosis factor alpha levels	3,454 Finnish ancestry individuals	NA	9p13.3	NR	rs10814274-C		8E-6		0.1085	[0.061-0.156] SD units increase	NR [10700000] (imputed)	N
857	chr9	35749013	35749014	rs1570247	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9p13.3	NR	rs1570247-G	0.585865	5E-13				Affymetrix, Illumina [22063850] (imputed)	N
857	chr9	35749013	35749014	rs1570247	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	9p13.3	TLN1, CREB3, GBA2, RGP1, MSMP, NPR2, SPAG8, HINT2	rs1570247-?		1E-8				NR [7428630] (imputed)	N
857	chr9	35749013	35749014	rs1570247	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	9p13.3	NR	rs1570247-G	0.5982	3E-10		0.0244	[0.017-0.032] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
857	chr9	35752251	35752252	rs1570249	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (min-P)	26,502 European ancestry individuals	NA	9p13.3	VIT, AC007382.1, STRN, HEATR5B	rs1570249-?		1E-8				NR [7428630] (imputed)	N
857	chr9	35752251	35752252	rs1570249	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	9p13.3	TSC22D2	rs1570249-?		2E-9				NR [7428630] (imputed)	N
857	chr9	35752251	35752252	rs1570249	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (min-P)	26,502 European ancestry individuals	NA	9p13.3	DPP4	rs1570249-?		5E-8				NR [7428630] (imputed)	N
857	chr9	35752274	35752275	rs35406278	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	9p13.3		rs35406278-G	NR	4E-10		0.0151	[0.01-0.02] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
857	chr9	35754499	35754500	rs1322045	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	9p13.3		rs1322045-A	NR	1E-19		0.0126	[0.0099-0.0153] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
857	chr9	35754499	35754500	rs1322045	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	9p13.3		rs1322045-A	0.740923	3E-12		0.0161081	[0.012-0.021] unit increase	Illumina [13479295] (imputed)	N
857	chr9	35754499	35754500	rs1322045	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	9p13.3	MSMP	rs1322045-?	NR	9E-15		0.02524411	[0.019-0.032] unit increase	Illumina [27896057] (imputed)	N
857	chr9	35757361	35757362	rs3750437	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	9p13.3	NR	rs3750437-T	0.335714	3E-15		0.015745	[0.012-0.02] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
857	chr9	35758577	35758578	rs10814275	25342443	Lindstrom S	2014-10-24	Nat Commun	Genome-wide association study identifies multiple loci associated with both mammographic density and breast cancer risk.	Mammographic density (non-dense area)	7,600 European ancestry individuals	343 European ancestry individuals, 1,472 Old Order Amish individuals, 8,564 individuals	9p13.3	intergenic	rs10814275-A	0.95	6E-7				Affymetrix, Illumina [~ 2500000] (imputed)	N
857	chr9	35762938	35762938	rs769010206	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	9p13.3	RGP1	rs769010206-T	NR	4E-8		0.0215007	[0.014-0.029] unit increase	Affymetrix [323123] (imputed)	N
857	chr9	35766560	35766561	rs4878628	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	9p13.3		rs4878628-?	NR	7E-10				NR [~ 8900000] (imputed)	N
857	chr9	35769370	35769371	rs1885376	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9p13.3		rs1885376-?	NR	3E-16				NR [~ 8900000] (imputed)	N
857	chr9	35776418	35776419	rs2381400	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	9p13.3		rs2381400-A	0.3	5E-16		8.12	z score increase	Affymetrix [9061022] (imputed)	N
857	chr9	35776418	35776419	rs2381400	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	9p13.3	NR	rs2381400-A	0.2841	6E-11				NR [9056863] (imputed)	N
858	chr9	35786311	35786312	rs6476491	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	9p13.3	NPR2	rs6476491-G	0.791738	5E-9		0.0133491	[0.0089-0.0178] unit increase	NR [13737936] (imputed)	N
858	chr9	35791639	35791640	rs78920801	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	9p13.3		rs78920801-T	0.25	9E-9		5.75	z score increase	Affymetrix [9061022] (imputed)	N
858	chr9	35800102	35800103	rs140870470	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Height	458,235 European ancestry individuals	NA	9p13.3		rs140870470-?	NR	2E-11		0.250527	[0.17-0.33] unit increase	NR [9800000] (imputed)	N
858	chr9	35801435	35801436	rs1078081	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	9p13.3		rs1078081-?	NR	2E-11				NR [~ 8900000] (imputed)	N
858	chr9	35802757	35802758	rs1388954473	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Height	458,235 European ancestry individuals	NA	9p13.3		rs1388954473-?	NR	6E-11		1.08564	[0.74-1.43] unit decrease	NR [9800000] (imputed)	N
858	chr9	35806216	35806217	rs114147262	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	9p13.3	NPR2	rs114147262-?	NR	9E-8		0.12284014	[0.078-0.168] unit increase	Illumina [27896057] (imputed)	N
858	chr9	35821796	35821797	rs2295799	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	9p13.3	FAM221B	rs2295799-G	NR	8E-6		1.0501	NR	Affymetrix, Illumina [8278136] (imputed)	N
858	chr9	35833447	35833448	rs10738948	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9p13.3	TMEM8B	rs10738948-C	0.608	2E-19	(Repulsive guidance molecule A, RGMA.5483.1.3)	0.23	[0.17-0.29] unit decrease	Affymetrix [10572788] (imputed)	N
858	chr9	35834941	35834942	rs2236291	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RGMA	5,352 Icelandic ancestry individuals	NA	9p13.3		rs2236291-G	0.4448	3E-27		0.193964	[0.16-0.23] unit decrease	Illumina [7506463] (imputed)	N
858	chr9	35837283	35837284	rs10758327	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HFE2	5,359 Icelandic ancestry individuals	NA	9p13.3		rs10758327-T	0.4432	5E-19		0.166898	[0.13-0.2] unit decrease	Illumina [7506463] (imputed)	N
858	chr9	35841782	35841783	rs2236293	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	9p13.3		rs2236293-A	0.41	2E-9		6.03	z score increase	Affymetrix [9061022] (imputed)	N
858	chr9	35841782	35841783	rs2236293	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	9p13.3	RP11-112J3.16, NPR2, SPAG8, TMEM8B, HINT2, FAM221B, OR13E1P, LINC00950	rs2236293-A	0.4410282	5E-14	(EA, Hemojuvelin)	0.3281	[0.24-0.41] unit decrease	Affymetrix [509946]	N
858	chr9	35901730	35901731	rs7847059	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	9p13.3	HRCT1	rs7847059-A	NR	2E-8		0.0160044	[0.01-0.022] unit decrease	Affymetrix [321016] (imputed)	N
858	chr9	35906470	35906471	rs76452347	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	9p13.3		rs76452347-?	NR	1E-11				NR [~ 8900000] (imputed)	N
858	chr9	35906470	35906471	rs76452347	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	9p13.3		rs76452347-?	NR	5E-14				NR [~ 8900000] (imputed)	N
858	chr9	35906470	35906471	rs76452347	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Diastolic blood pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	154,543 European ancestry individuals, 26,183 South Asian ancestry individuals	9p13.3	HRCT1	rs76452347-T	0.191	7E-10		0.23	[0.15-0.31] unit decrease	Illumina [247039]	N
858	chr9	35906503	35906504	rs141107455	32232851	Deguchi H	2020-03-30	Br J Haematol	Novel exomic rare variants associated with venous thrombosis.	Venous thromboembolism	104 European ancestry cases, 211 European ancestry controls	NA	9p13.3	HRCT1	rs141107455-?	0.0059	9E-6				Illumina [308166]	N
858	chr9	35909517	35909518	rs748802	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	9p13.3	HRCT1	rs748802-G	0.656047	9E-9	(208 ms)	0.0348102	[0.023-0.047] unit increase	Affymetrix [10000000] (imputed)	N
858	chr9	35909517	35909518	rs748802	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	9p13.3	HRCT1	rs748802-G	0.656047	9E-11	(166 ms)	0.0381716	[0.027-0.05] unit increase	Affymetrix [10000000] (imputed)	N
858	chr9	35909517	35909518	rs748802	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	9p13.3	HRCT1	rs748802-G	0.656047	8E-12	(152 ms)	0.0410742	[0.029-0.053] unit increase	Affymetrix [10000000] (imputed)	N
858	chr9	35909517	35909518	rs748802	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	9p13.3	HRCT1	rs748802-G	0.656047	8E-11	(172 ms)	0.0385199	[0.027-0.05] unit increase	Affymetrix [10000000] (imputed)	N
858	chr9	35909517	35909518	rs748802	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	9p13.3	HRCT1	rs748802-G	0.656047	8E-10	(184 ms)	0.0363006	[0.025-0.048] unit increase	Affymetrix [10000000] (imputed)	N
858	chr9	35909517	35909518	rs748802	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	9p13.3	HRCT1	rs748802-G	0.656047	7E-10	(174 ms)	0.0365061	[0.025-0.048] unit increase	Affymetrix [10000000] (imputed)	N
858	chr9	35909517	35909518	rs748802	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	9p13.3	HRCT1	rs748802-G	0.656047	7E-10	(146 ms)	0.0368713	[0.025-0.048] unit increase	Affymetrix [10000000] (imputed)	N
858	chr9	35909517	35909518	rs748802	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	9p13.3	HRCT1	rs748802-G	0.656047	6E-9	(128 ms)	0.0346208	[0.023-0.046] unit increase	Affymetrix [10000000] (imputed)	N
858	chr9	35909517	35909518	rs748802	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	9p13.3	HRCT1	rs748802-G	0.656047	6E-11	(144 ms)	0.0382874	[0.027-0.05] unit increase	Affymetrix [10000000] (imputed)	N
858	chr9	35909517	35909518	rs748802	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	9p13.3	HRCT1	rs748802-G	0.656047	6E-10	(188 ms)	0.0368151	[0.025-0.048] unit increase	Affymetrix [10000000] (imputed)	N
858	chr9	35909517	35909518	rs748802	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	9p13.3	HRCT1	rs748802-G	0.656047	6E-10	(178 ms)	0.0368435	[0.025-0.048] unit increase	Affymetrix [10000000] (imputed)	N
858	chr9	35909517	35909518	rs748802	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	9p13.3	HRCT1	rs748802-G	0.656047	5E-8	(138 ms)	0.032836	[0.021-0.044] unit increase	Affymetrix [10000000] (imputed)	N
858	chr9	35909517	35909518	rs748802	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	9p13.3	HRCT1	rs748802-G	0.656047	5E-13	(154 ms)	0.0429602	[0.031-0.055] unit increase	Affymetrix [10000000] (imputed)	N
858	chr9	35909517	35909518	rs748802	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	9p13.3	HRCT1	rs748802-G	0.656047	5E-10	(194 ms)	0.03716	[0.025-0.049] unit increase	Affymetrix [10000000] (imputed)	N
858	chr9	35909517	35909518	rs748802	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	9p13.3	HRCT1	rs748802-G	0.656047	5E-10	(190 ms)	0.0375345	[0.026-0.049] unit increase	Affymetrix [10000000] (imputed)	N
858	chr9	35909517	35909518	rs748802	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	9p13.3	HRCT1	rs748802-G	0.656047	5E-10	(160 ms)	0.0375633	[0.026-0.049] unit increase	Affymetrix [10000000] (imputed)	N
858	chr9	35909517	35909518	rs748802	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	9p13.3	HRCT1	rs748802-G	0.656047	4E-9	(200 ms)	0.0356191	[0.024-0.047] unit increase	Affymetrix [10000000] (imputed)	N
858	chr9	35909517	35909518	rs748802	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	9p13.3	HRCT1	rs748802-G	0.656047	4E-9	(176 ms)	0.0347335	[0.023-0.046] unit increase	Affymetrix [10000000] (imputed)	N
858	chr9	35909517	35909518	rs748802	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	9p13.3	HRCT1	rs748802-G	0.656047	4E-11	(180 ms)	0.039605	[0.028-0.051] unit increase	Affymetrix [10000000] (imputed)	N
858	chr9	35909517	35909518	rs748802	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	9p13.3	HRCT1	rs748802-G	0.656047	4E-10	(192 ms)	0.0377007	[0.026-0.049] unit increase	Affymetrix [10000000] (imputed)	N
858	chr9	35909517	35909518	rs748802	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	9p13.3	HRCT1	rs748802-G	0.656047	3E-9	(196 ms)	0.0355415	[0.024-0.047] unit increase	Affymetrix [10000000] (imputed)	N
858	chr9	35909517	35909518	rs748802	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	9p13.3	HRCT1	rs748802-G	0.656047	3E-11	(170 ms)	0.0393924	[0.028-0.051] unit increase	Affymetrix [10000000] (imputed)	N
858	chr9	35909517	35909518	rs748802	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	9p13.3	HRCT1	rs748802-G	0.656047	3E-10	(162 ms)	0.0377711	[0.026-0.049] unit increase	Affymetrix [10000000] (imputed)	N
858	chr9	35909517	35909518	rs748802	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	9p13.3	HRCT1	rs748802-G	0.656047	2E-9	(198 ms)	0.035981	[0.024-0.048] unit increase	Affymetrix [10000000] (imputed)	N
858	chr9	35909517	35909518	rs748802	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	9p13.3	HRCT1	rs748802-G	0.656047	2E-9	(148 ms)	0.0357094	[0.024-0.047] unit increase	Affymetrix [10000000] (imputed)	N
858	chr9	35909517	35909518	rs748802	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	9p13.3	HRCT1	rs748802-G	0.656047	2E-9	(126 ms)	0.0355753	[0.024-0.047] unit increase	Affymetrix [10000000] (imputed)	N
858	chr9	35909517	35909518	rs748802	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	9p13.3	HRCT1	rs748802-G	0.656047	2E-8	(140 ms)	0.0341319	[0.023-0.046] unit increase	Affymetrix [10000000] (imputed)	N
858	chr9	35909517	35909518	rs748802	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	9p13.3	HRCT1	rs748802-G	0.656047	2E-11	(168 ms)	0.0396317	[0.028-0.051] unit increase	Affymetrix [10000000] (imputed)	N
858	chr9	35909517	35909518	rs748802	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	9p13.3	HRCT1	rs748802-G	0.656047	2E-11	(156 ms)	0.0395756	[0.028-0.051] unit increase	Affymetrix [10000000] (imputed)	N
858	chr9	35909517	35909518	rs748802	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	9p13.3	HRCT1	rs748802-G	0.656047	1E-9	(186 ms)	0.0360665	[0.024-0.048] unit increase	Affymetrix [10000000] (imputed)	N
858	chr9	35909517	35909518	rs748802	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	9p13.3	HRCT1	rs748802-G	0.656047	1E-9	(158 ms)	0.0367796	[0.025-0.048] unit increase	Affymetrix [10000000] (imputed)	N
858	chr9	35909517	35909518	rs748802	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	9p13.3	HRCT1	rs748802-G	0.656047	1E-9	(150 ms)	0.0364792	[0.025-0.048] unit increase	Affymetrix [10000000] (imputed)	N
858	chr9	35909517	35909518	rs748802	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	9p13.3	HRCT1	rs748802-G	0.656047	1E-9	(142 ms)	0.0366467	[0.025-0.048] unit increase	Affymetrix [10000000] (imputed)	N
858	chr9	35909517	35909518	rs748802	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	9p13.3	HRCT1	rs748802-G	0.656047	1E-8	(136 ms)	0.0334638	[0.022-0.045] unit increase	Affymetrix [10000000] (imputed)	N
858	chr9	35909517	35909518	rs748802	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	9p13.3	HRCT1	rs748802-G	0.656047	1E-8	(124 ms)	0.0343078	[0.023-0.046] unit increase	Affymetrix [10000000] (imputed)	N
858	chr9	35909517	35909518	rs748802	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	9p13.3	HRCT1	rs748802-G	0.656047	1E-10	(164 ms)	0.0375509	[0.026-0.049] unit increase	Affymetrix [10000000] (imputed)	N
858	chr9	35909517	35909518	rs748802	27798624	Eppinga RN	2016-10-31	Nat Genet	Identification of genomic loci associated with resting heart rate and shared genetic predictors with all-cause mortality.	Resting heart rate	127,919 European ancestry individuals, 2,478 Asian ancestry individuals, 1,734 Black individuals, 684 Mixed ancestry individuals, 1,436 individuals	130,795 European ancestry individuals	9p13.3	HRCT1	rs748802-A	0.34	1E-8		0.2022	[0.13-0.27] unit decrease	Affymetrix [19941912] (imputed)	N
858	chr9	35911832	35911833	rs13297831	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	9p13.3	SPAAR	rs13297831-C	0.5717	7E-13		0.0139	[0.01-0.018] unit increase	Affymetrix [18391927] (imputed)	N
858	chr9	35911832	35911833	rs13297831	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9p13.3		rs13297831-?	NR	5E-29				NR [~ 8900000] (imputed)	N
859	chr9	35927976	35927977	rs7033996	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels (BMI interaction)	28,610 European ancestry individuals	13,959 European ancestry individuals	9p13.3	LOC158376, OR2S2	rs7033996-C	0.11	2E-6	(Combined sex)	0.012	[0.0061-0.0179] unit decrease	Affymetrix, Illumina [at least 188473] (imputed)	N
859	chr9	35937930	35937931	rs141809766	33137338	Gorski M	2020-10-30	Kidney Int	Meta-analysis uncovers genome-wide significant variants for rapid kidney function decline.	Estimated glomerular filtration rate (creatinine, Rapid3)	34,874 European, African American, Hispanic or South Asian cases, 107,090 European, African American, Hispanic or South Asian controls	NA	9p13.3	OR2S2	rs141809766-G	0.02	6E-9		1.222	NR	Affymetrix, Illumina [> 8000000] (imputed)	N
859	chr9	35937930	35937931	rs141809766	33137338	Gorski M	2020-10-30	Kidney Int	Meta-analysis uncovers genome-wide significant variants for rapid kidney function decline.	Estimated glomerular filtration rate (creatinine, Rapid3)	31,101 European ancestry cases, 102,485 European ancestry controls	NA	9p13.3	OR2S2	rs141809766-G	NR	4E-9		1.229	[1.16-1.30]	Affymetrix, Illumina [> 8000000] (imputed)	N
859	chr9	35942520	35942521	rs13283964	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	9p13.3		rs13283964-C	NR	2E-9		0.0126	[0.0085-0.0167] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
859	chr9	36030410	36030411	rs7862640	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	9p13.3	OR2S2	rs7862640-?	NR	5E-6	(pantothenic acid)	0.3342776	[0.19-0.48] unit decrease	Affymetrix [at least 2500000] (imputed)	N
860	chr9	36099398	36099399	rs4878639	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	9p13.3	RECK	rs4878639-C	0.263725273253227	6E-7	(IGP53)	0.1779	[0.11-0.25] unit decrease	Illumina [~ 2500000] (imputed)	N
860	chr9	36099398	36099399	rs4878639	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	9p13.3	RECK	rs4878639-C	0.263725273253227	6E-6	(IGP13)	0.1615	[0.092-0.231] unit decrease	Illumina [~ 2500000] (imputed)	N
860	chr9	36099398	36099399	rs4878639	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	9p13.3	RECK	rs4878639-C	0.263725273253227	4E-8	(IGP17)	0.1959	[0.13-0.27] unit decrease	Illumina [~ 2500000] (imputed)	N
860	chr9	36099398	36099399	rs4878639	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	9p13.3	RECK	rs4878639-C	0.263725273253227	1E-6	(IGP57)	0.1734	[0.1-0.24] unit decrease	Illumina [~ 2500000] (imputed)	N
861	chr9	36194568	36194569	rs3736986	25781172	Avramopoulos D	2015-03-17	PLoS One	Infection and inflammation in schizophrenia and bipolar disorder: a genome wide study for interactions with genetic variation.	Bipolar disorder (inflammation and infection response interaction)	397 Ashkenazi Jewish bipolar disorder cases, 241  Ashkenazi Jewish controls	NA	9p13.3	CLTA, GNE, RNF38, GLIPR2, RECK	rs3736986-?		6E-6	(anti-HSV1)			Affymetrix [516638]	N
861	chr9	36204454	36204455	rs2025879	34224794	Wang K	2021-07-02	Prog Neuropsychopharmacol Biol Psychiatry	Genome-wide association study identified INSC gene associated with Trail Making Test Part A and Alzheimer's disease related cognitive phenotypes.	Perceptual and visual search speed (trail making test A)	684 European ancestry individuals, 17 Hispanic individuals, 36 African American individuals, 18 individuals	NA	9p13.3		rs2025879-A	0.32	3E-6		0.05045	[0.029-0.071] unit decrease	NR [534934]	N
861	chr9	36231127	36231131	rs201933111	32009195	Condreay LD	2020-02-03	Rheumatol Int	Pharmacogenetic investigation of efficacy response to mepolizumab in eosinophilic granulomatosis with polyangiitis.	Frequency of relapse in mepolizumab-treated eosinophilic granulomatosis with polyangiitis	61 individuals	NA	9p13.3	NR	rs201933111-?	NR	1E-6		1.4628	[0.92-2.00] unit decrease	Affymetrix [7154205] (imputed)	N
861	chr9	36238453	36238454	rs187960516	31006051	Kharazmi M	2019-04-20	Calcif Tissue Int	A Genome-Wide Association Study of Bisphosphonate-Associated Atypical Femoral Fracture.	Bisphosphonate-associated atypical femoral fracture	50 European ancestry cases, 1 Chilean ancestry case, 4,891 European ancestry controls	NA	9p13.3	CLTA, GNE	rs187960516-A	0.01	2E-6		7.132	[3.164-16.07]	Illumina [7585874] (imputed)	N
861	chr9	36293289	36293290	rs191196669	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	CTACK levels	3,631 Finnish ancestry individuals	NA	9p13.3	NR	rs191196669-G	NR	3E-6		0.6247	[0.37-0.88] SD units increase	NR [10700000] (imputed)	N
862	chr9	36308826	36308827	rs10124101	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	9p13.2	HMGB3P24	rs10124101-G	NR	8E-7		1.049318	[1.03-1.07]	Illumina [6627481] (imputed)	N
862	chr9	36308826	36308827	rs10124101	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	9p13.2	HMGB3P24	rs10124101-G	NR	5E-6	(EA)	1.0516353	[1.03-1.07]	Illumina [6627481] (imputed)	N
862	chr9	36308826	36308827	rs10124101	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	9p13.2	intergenic	rs10124101-G	NR	2E-7		1.0504202	[1.03-1.07]	Affymetrix, Illumina [up to 5107227] (imputed)	N
862	chr9	36308826	36308827	rs10124101	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	9p13.2	NR	rs10124101-G	NR	1E-6		1.0526316	[NR]	Illumina [7158791] (imputed)	N
862	chr9	36318844	36318845	rs9644880	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs autism spectrum disorder (ordinary least squares (OLS))	40,675 schizophrenia cases, 18,381 autism spectrum disorder cases	NA	9p13.2		rs9644880-?	NR	1E-8		0.017	NR unit increase	NR [4484088] (imputed)	N
862	chr9	36320763	36320764	rs116375672	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9p13.2	NR	rs116375672-A	0.01394	5E-10	(SBDS)	0.06039	NR unit increase	Illumina [1671387] (imputed)	N
862	chr9	36394227	36394228	rs7861024	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	9p13.2		rs7861024-?	NR	6E-8				NR [~ 8900000] (imputed)	N
864	chr9	36687105	36687106	rs10046792	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid pneumonia vs population)	1,004 European ancestry cases, 680,354 European ancestry controls, 218 Hispanic or Latin American cases, 94,318 Hispanic or Latin American controls, 64 Black or African American cases, 22,412 Black or African American controls	NA	9p13.2		rs10046792-?	NR	4E-6		1.0135854	[0.59-1.44] unit decrease	Illumina [9901720] (imputed)	N
865	chr9	36805873	36805874	rs2800257	30070759	Olsson M	2018-08-02	J Thromb Haemost	Genome-wide analysis of genetic determinants of circulating factor VII activating protease (FSAP) activity.	Plasma factor VII activating protease levels	3,126 Swedish ancestry individuals	NA	9p13.2	Intergenic	rs2800257-?		6E-6		34.5	[19.6-49.4] unit increase	Illumina [~ 10000000] (imputed)	N
866	chr9	36885123	36885124	rs138296128	33852427	Wittekind DA	2021-04-01	Eur J Endocrinol	Genome-wide association and transcriptome analysis suggests total serum ghrelin to be linked with GFRAL.	ghrelin levels	1,501 individuals	NA	9p13.2	PAX5	rs138296128-A	NR	8E-7		0.38	[0.23-0.53] unit decrease	Affymetrix [9868623] (imputed)	N
866	chr9	36901160	36901161	rs1936637	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	9p13.2		rs1936637-T	0.6601	9E-9		0.013	[0.0091-0.0169] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
867	chr9	36969204	36969205	rs16933812	22013104	Melka MG	2011-10-19	J Clin Endocrinol Metab	Genome-wide scan for loci of adolescent obesity and their relationship with blood pressure.	Obesity-related traits	598 French Canadian founder adolescent individuals	NA	9p13.2	PAX5	rs16933812-?		9E-9	(TFM)			Illumina [530011]	N
867	chr9	36969204	36969205	rs16933812	22013104	Melka MG	2011-10-19	J Clin Endocrinol Metab	Genome-wide scan for loci of adolescent obesity and their relationship with blood pressure.	Obesity-related traits	598 French Canadian founder adolescent individuals	NA	9p13.2	PAX5	rs16933812-?		5E-6	(BMI)			Illumina [530011]	N
867	chr9	36989006	36989007	rs3013733	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	9p13.2	NR	rs3013733-?	NR	1E-10				Affymetrix [~ 8270000] (imputed)	N
867	chr9	36992546	36992547	rs10973159	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		9p13.2	PAX5	rs10973159-G	0.379951	1E-8		0.00805227	[0.0053-0.0108] unit decrease	Affymetrix [12370749]	N
867	chr9	36994968	36994969	rs10973160	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	9p13.2		rs10973160-T	0.3195	2E-8		0.013	[0.0091-0.0169] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
867	chr9	36999368	36999369	rs7030813	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	9p13.2		rs7030813-?	NR	2E-18		0.0243	unit increase	NR [NR]	N
867	chr9	36999368	36999369	rs7030813	30718901	Howard DM	2019-02-04	Nat Neurosci	Genome-wide meta-analysis of depression identifies 102 independent variants and highlights the importance of the prefrontal brain regions.	Depression	118,811 European ancestry cases, 327,427 European ancestry controls, 127,552 cases, 233,763 controls	414,055 European ancestry cases, 892,299 European ancestry controls	9p13.2	NR	rs7030813-T	0.3736	9E-30		1.025	[1.021-1.03]	NR [8098588] (imputed)	N
867	chr9	36999368	36999369	rs7030813	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	9p13.2	NR	rs7030813-T	0.3739	4E-7		0.0062	[0.0038-0.0086] unit increase	NR [7666894] (imputed)	N
867	chr9	37000686	37000687	rs3824344	34859065	Zhang F	2021-11-11	Front Cardiovasc Med	Shared Genetic Liability and Causal Associations Between Major Depressive Disorder and Cardiovascular Diseases.	Major depressive disorder or stroke (pleiotropy)	135,458 European ancestry MDD cases, 40,585 European ancestry stroke cases, 751,012 European ancestry controls	NA	9p13.2		rs3824344-?	NR	7E-9				NR [8243736]	N
867	chr9	37000686	37000687	rs3824344	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	9p13.2	NR	rs3824344-T	0.372893566875735	7E-9		0.0068335286	[0.0045-0.0091] unit increase	NR [NR]	N
867	chr9	37000686	37000687	rs3824344	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	9p13.2	NR	rs3824344-T	0.372893566875735	6E-9		0.008889837	[0.0059-0.0119] unit increase	NR [NR]	N
867	chr9	37000686	37000687	rs3824344	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	9p13.2	NR	rs3824344-T	0.372893566875735	1E-8		0.007281734	[0.0048-0.0098] unit increase	NR [NR]	N
867	chr9	37000686	37000687	rs3824344	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	9p13.2	NR	rs3824344-T	0.372893566875735	5E-9		0.0057120863	[0.0038-0.0076] unit increase	NR [NR]	N
867	chr9	37001470	37001471	rs1329572	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	9p13.2	NR	rs1329572-A	0.373379994308511	1E-8		0.0054359585	[0.0036-0.0073] unit increase	NR [NR]	N
867	chr9	37002141	37002142	rs12554596	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on IgD+ CD38- B cell	3,645 Sardinian (founder/genetic isolate) ancestry individuals	NA	9p13.2		rs12554596-G	0.38943	8E-10		0.1558	[0.11-0.21] unit decrease	Illumina [18234152] (imputed)	N
867	chr9	37002141	37002142	rs12554596	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	Composite immunoglobulin trait (IgA/IgM)	14,183 Icelandic ancestry individuals	2,146 Swedish ancestry individuals	9p13.2	PAX5	rs12554596-G	0.1843	4E-8		0.09	NR SD units increase	Illumina [21568490] (imputed)	N
867	chr9	37003703	37003704	rs62533709	33169155	Bigdeli TB	2020-11-10	Schizophr Bull	Genome-Wide Association Studies of Schizophrenia and Bipolar Disorder in a Diverse Cohort of US Veterans.	Bipolar disorder	24,267 European ancestry cases, 3,027 African American cases, 1,032 Latino cases, 79,492 European ancestry controls, 8,097 African American controls, 3,090 Latino controls	NA	9p13.2	PAX5	rs62533709-T	NR	3E-9		1.11	[1.07-1.15]	Affymetrix [up to 49134253] (imputed)	N
867	chr9	37005560	37005561	rs6476606	27479909	Hyde CL	2016-08-01	Nat Genet	Identification of 15 genetic loci associated with risk of major depression in individuals of European descent.	Major depressive disorder	84,847 European ancestry cases, 241,266 European ancestry controls	45,773 European ancestry cases, 106,354 European ancestry controls	9p13.2	PAX5	rs6476606-G	0.637191	1E-8		0.0277	[0.016-0.039] unit decrease	Illumina [1220000] (imputed)	N
867	chr9	37034094	37034095	rs143723948	29695241	Charmet R	2018-04-25	Cardiovasc Diabetol	Novel risk genes identified in a genome-wide association study for coronary artery disease in patients with type 1 diabetes.	Coronary artery disease in type 1 diabetes	434 European ancestry cases with coronary artery disease, 3,123 European ancestry cases without coronary artery disease	585 cases with coronary artery disease, 2,612 cases without coronary artery disease	9p13.2	PAX5	rs143723948-T	0.499	6E-7	(EA)	1.65	[NR]	Illumina [6728637] (imputed)	N
867	chr9	37036246	37036247	rs2282079	30636644	Nazarian A	2019-01-12	Alzheimers Res Ther	Genome-wide analysis of genetic predisposition to Alzheimer's disease and related sex disparities.	Alzheimer's disease	952 European ancestry male cases, 1,789 European ancestry female cases, 6,337 European ancestry male controls, 8,402 European ancestry female controls	NA	9p13.2	PAX5	rs2282079-?	NR	4E-6		1.6799409		Affymetrix, Illumina [2928658] (imputed)	N
867	chr9	37037975	37037976	rs1329568	22491018	Wang J	2012-04-10	Pharmacogenomics J	Genome-wide association analysis implicates the involvement of eight loci with response to tocilizumab for the treatment of rheumatoid arthritis.	Response to tocilizumab in rheumatoid arthritis	1,157 European and other ancestry rheumatoid arthritis cases	526 European and other ancestry rheumatoid arthritis cases		intergenic	rs1329568-?	0.029	8E-7	(CSJC, RF-)	19.64	[NR] unit increase	Illumina [534053]	N
867	chr9	37044387	37044388	rs2988004	29899525	Klimentidis YC	2018-06-13	Int J Obes (Lond)	Genome-wide association study of habitual physical activity in over 377,000 UK Biobank participants identifies multiple variants including CADM2 and APOE.	Moderate to vigorous physical activity levels	377,234 European ancestry individuals	NA	9p13.2	PAX5	rs2988004-T	0.56	4E-9		0.013	unit decrease	Affymetrix [11800000] (imputed)	N
867	chr9	37075091	37075092	rs140028196	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	9p13.2	NR	rs140028196-T	NR	1E-6	(male)	0.4859	[0.29-0.68] unit decrease	Illumina [11133794] (imputed)	N
867	chr9	37075622	37075623	rs13297152	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	9p13.2		rs13297152-T	NR	3E-10		0.0135	[0.0094-0.0176] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
867	chr9	37078490	37078491	rs7857936	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	9p13.2		rs7857936-C	NR	4E-9		0.0102	[0.0069-0.0135] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
867	chr9	37079660	37079661	rs2291589	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	9p13.2		rs2291589-T	0.6226	2E-16		0.018	[0.014-0.022] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
867	chr9	37079660	37079661	rs2291589	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	9p13.2	PAX5, ZCCHC7	rs2291589-T	0.6252	2E-16		1.0288		Affymetrix [11880941] (imputed)	N
867	chr9	37081300	37081301	rs7034554	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	9p13.2	NR	rs7034554-?	NR	3E-13				Affymetrix [~ 8270000] (imputed)	N
867	chr9	37084339	37084340	rs6476613	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	9p13.2		rs6476613-A	0.625	1E-9		0.007	[0.005-0.009] unit decrease	NR [NR] (imputed)	N
867	chr9	37085183	37085184	rs7020830	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	9p13.2	NR	rs7020830-T	NR	8E-6		1.0526316	[NR]	Illumina [7158791] (imputed)	N
867	chr9	37090537	37090538	rs10973201	34002096	Mullins N	2021-05-17	Nat Genet	Genome-wide association study of more than 40,000 bipolar disorder cases provides new insights into the underlying biology.	Bipolar disorder	41,917 European ancestry cases, 371,549 European ancestry controls	NA	9p13.2	ZCCHC7	rs10973201-T	0.89	2E-8		0.90846	[0.87-0.94]	Affymetrix, Illumina [7549318] (imputed)	N
868	chr9	37100524	37100525	rs10973207	30846698	Dashti HS	2019-03-07	Nat Commun	Genome-wide association study identifies genetic loci for self-reported habitual sleep duration supported by accelerometer-derived estimates.	Sleep duration	446,118 European ancestry individuals	47,180  adults, 10,554 children or adolescents	9p13.2	NR	rs10973207-T	NR	1E-9		1.05	unit increase	Affymetrix [14661600] (imputed)	N
868	chr9	37100524	37100525	rs10973207	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Sleep duration	384,317 European ancestry individuals	NA	9p13.2		rs10973207-T	0.1549	2E-9		0.02033	[0.014-0.027] unit increase	Affymetrix, Illumina [10862567] (imputed)	N
868	chr9	37127544	37127545	rs7856690	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	9p13.2		rs7856690-T	NR	2E-9		0.0123	[0.0084-0.0162] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
868	chr9	37127544	37127545	rs7856690	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	9p13.2		rs7856690-T	NR	3E-10		0.0128	[0.0089-0.0167] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
868	chr9	37127677	37127678	rs13293465	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	9p13.2		rs13293465-?	NR	5E-13				NR [~ 8900000] (imputed)	N
868	chr9	37129495	37129496	rs13285624	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	9p13.2		rs13285624-?	NR	8E-8				NR [~ 8900000] (imputed)	N
868	chr9	37166188	37166189	rs62535709	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	9p13.2	LOC100506710, ZCCHC7, GRHPR, ZBTB5	rs62535709-T	0.0586	8E-8		1.13633	[1.09-1.18]	NR [9372253] (imputed)	N
868	chr9	37174828	37174829	rs62535711	30745170	Strawbridge RJ	2019-02-07	EBioMedicine	Identification of novel genome-wide associations for suicidality in UK Biobank, genetic correlation with psychiatric disorders and polygenic association with completed suicide.	Suicidality	122,808 British ancestry individuals	NA	9p13.2	NR	rs62535711-T	0.056	1E-8		0.105	[0.07-0.14] unit increase	Affymetrix [9481578] (imputed)	N
868	chr9	37182654	37182655	rs62535714	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Major depressive disorder (MTAG)	at least 170,756 European ancestry cases, at least 329,443 European ancestry controls	NA	9p13.2	NR	rs62535714-A	0.1639	6E-9		0.032263294	[0.021-0.043] unit increase	NR [NR]	N
868	chr9	37200102	37200103	rs6476617	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	9p13.2	NA	rs6476617-A	0.3797	2E-17		0.0149	[0.012-0.018] unit decrease	NR [~ 27400000] (imputed)	N
868	chr9	37207268	37207269	rs4526442	31926635	Coleman JRI	2019-11-01	Biol Psychiatry	The Genetics of the Mood Disorder Spectrum: Genome-wide Association Analyses of More Than 185,000 Cases and 439,000 Controls.	Bipolar disorder or major depressive disorder	164,933 European ancestry major depressive disorder cases, 20,352 European ancestry bipolar disorder cases, 439,741 European ancestry controls	NA	9p13.2	NR	rs4526442-C	NR	8E-11		1.0416667		NR [NR] (imputed)	N
868	chr9	37207268	37207269	rs4526442	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	9p13.2	ZCCHC7	rs4526442-?		4E-8				NR [6786993] (imputed)	N
869	chr9	37228389	37228390	rs113940640	31560688	Geidenstam N	2019-09-27	PLoS One	Using metabolite profiling to construct and validate a metabolite risk score for predicting future weight gain.	Metabolite risk score for predicting weight gain	1,937 individuals	NA	9p13.2	ZCCHC7	rs113940640-A	0.023	4E-7		0.657	[0.4-0.91] unit increase	Affymetrix, Illumina [up to 22000000] (imputed)	N
869	chr9	37233857	37233858	rs78146603	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	9p13.2		rs78146603-T	0.96175	3E-9		0.033	[0.021-0.045] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
869	chr9	37244504	37244505	rs12554976	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	9p13.2	ZCCHC7	rs12554976-G	0.6204000000000001	1E-16		1.0287007		Affymetrix [11880941] (imputed)	N
869	chr9	37245475	37245476	rs563132	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	9p13.2		rs563132-T	NR	4E-9		0.0304	[0.02-0.041] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
869	chr9	37245475	37245476	rs563132	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	9p13.2	ZCCHC7	rs563132-T	0.390895	4E-8		0.03387368	[0.022-0.046] unit decrease	Affymetrix [7288503] (imputed)	N
869	chr9	37254138	37254139	rs10973268	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter beverage consumption	85,852 European ancestry individuals	39,924 European ancestry individuals	9p13.2	ZCCHC7	rs10973268-C	0.4559	8E-6		0.0072	[0.0041-0.0103] unit increase	Affymetrix [~ 7740000] (imputed)	N
869	chr9	37344528	37344529	rs10973303	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	9p13.2		rs10973303-?	NR	7E-17		0.031	unit increase	NR [NR]	N
869	chr9	37348058	37348059	rs308499	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	9p13.2	NA	rs308499-C	0.5984	1E-16		0.0144	[0.011-0.018] unit increase	NR [~ 27400000] (imputed)	N
870	chr9	37363637	37363638	rs779732076	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	C-reactive protein levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	9p13.2	ZCCHC7, GRHPR	rs779732076-?		9E-10		1.2473	[0.85-1.65] unit decrease	Illumina [31500000] (imputed)	N
870	chr9	37367093	37367094	rs308521	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	9p13.2	ZCCHC7, GRHPR	rs308521-T	0.6039	4E-17		1.0293		Affymetrix [11880941] (imputed)	N
870	chr9	37367093	37367094	rs308521	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	9p13.2	ZCCHC7, GRHPR	rs308521-T	0.6039	4E-17		1.0287043		Affymetrix [11880941] (imputed)	N
870	chr9	37367093	37367094	rs308521	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	9p13.2		rs308521-?	NR	9E-10				NR [~ 8900000] (imputed)	N
870	chr9	37382230	37382231	rs72739603	31092817	Lees JA	2019-05-15	Nat Commun	Joint sequencing of human and pathogen genomes reveals the genetics of pneumococcal meningitis.	Severe bacterial meningitis	277 European and unknown ancestry cases, 4,836 European and unknown ancestry controls	NA	9p13.2	ZCCHC7, GRHPR	rs72739603-A	NR	7E-7		2.36	NR	Illumina [6800000] (imputed)	N
870	chr9	37441649	37441650	rs17502738	33568662	Dashti HS	2021-02-10	Nat Commun	Genetic determinants of daytime napping and effects on cardiometabolic health.	Daytime nap	452,633 European ancestry individuals	541,333 European ancestry individuals	9p13.2	ZBTB5	rs17502738-T		1E-8		0.006	[0.0038-0.0082] unit increase	Affymetrix [13304133] (imputed)	N
871	chr9	37510071	37510072	rs76582507	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1b levels	8,243 Finnish ancestry individuals	NA	9p13.2	NR	rs76582507-G	NR	3E-6		0.3175	[0.18-0.45] SD units decrease	NR [10700000] (imputed)	N
871	chr9	37590249	37590250	rs57578064	28753643	Yeo A	2017-07-28	PLoS One	Pharmacogenetic meta-analysis of baseline risk factors, pharmacodynamic, efficacy and tolerability endpoints from two large global cardiovascular outcomes trials for darapladib.	Lipoprotein phospholipase A2 activity in cardiovascular disease	22,156 European, Asian, African, Arabic, Native American, Pacific Islander and other ancestry	NA	9p13.2	RP11-613M10.8, TOMM5, RP11-613M10.9	rs57578064-A	0.009	1E-8		32.49	[21.28-43.7] (nmol/min/ml) increase	Affymetrix, Illumina [13572687] (imputed)	N
872	chr9	37654256	37654257	rs4878712	25786224	Johnson EO	2015-03-18	PLoS One	Novel genetic locus implicated for HIV-1 acquisition with putative regulatory links to HIV replication and infectivity: a genome-wide association study.	HIV-1 susceptibility	628 African American high risk-cases, 1,376 African American high-risk controls, 327 European ancestry high-risk cases, 805 European ancestry high-risk controls	1,395 African American high-risk cases, 457 African American high-risk controls, 513 European ancestry high-risk cases, 168 European ancestry high-risk controls	9p13.2	FRMPD1, PAX5, ZCCHC7, FBXO10	rs4878712-A	0.69	5E-7	(AA)	1.32	[1.14-1.54]	Illumina [~ 8000000] (imputed)	N
872	chr9	37654256	37654257	rs4878712	25786224	Johnson EO	2015-03-18	PLoS One	Novel genetic locus implicated for HIV-1 acquisition with putative regulatory links to HIV replication and infectivity: a genome-wide association study.	HIV-1 susceptibility	628 African American high risk-cases, 1,376 African American high-risk controls, 327 European ancestry high-risk cases, 805 European ancestry high-risk controls	1,395 African American high-risk cases, 457 African American high-risk controls, 513 European ancestry high-risk cases, 168 European ancestry high-risk controls	9p13.2	FRMPD1, PAX5, ZCCHC7, FBXO10	rs4878712-?		4E-7				Illumina [~ 8000000] (imputed)	N
873	chr9	37778970	37778974	rs201857596	33106475	Li QS	2020-10-26	Transl Psychiatry	Genome-wide association studies of antidepressant class response and treatment-resistant depression.	Response to serotonin-norepinephrine reuptake inhibitors (responders vs non-responders)	4,030 European ancestry responders, 3,049 European ancestry non-responders	NA	9p13.2	NR	rs201857596-?	NR	9E-6		1.3417	NR	Illumina [at least 560000] (imputed)	N
873	chr9	37819175	37819176	rs11330143	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	9p13.2	DCAF10, RP11-613M10.9	rs11330143-C	0.174518	2E-9		0.01793482	[0.012-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
873	chr9	37823244	37823245	rs78173384	27629369	Gao J	2016-09-15	Neuropsychopharmacology	Genome-Wide Association Study of Loneliness Demonstrates a Role for Common Variation.	Loneliness (linear analysis)	8,490 European ancestry individuals, 1,228 African American individuals, 867 Hispanic American individuals, 175 individuals	NA	9p13.2	DCAF10, SLC25A51	rs78173384-?		2E-6	(EA)	0.374	[0.22-0.53] unit increase	Illumina [7205781] (imputed)	N
873	chr9	37849921	37849922	rs776014	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	9p13.2	NR	rs776014-?	NR	7E-6		0.163	[0.093-0.233] unit increase	Illumina [at least 560000] (imputed)	N
873	chr9	37863148	37863149	rs73449401	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	9p13.2	DCAF10	rs73449401-C	0.166942	3E-9		0.017752271	[0.012-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
874	chr9	37916407	37916408	rs3747547	23934736	Yu B	2013-08-11	Genet Epidemiol	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels (Dihydroxy docosatrienoic acid)	1,260 African American individuals	NA	9p13.1	SHB	rs3747547-C		5E-6		0.09	[0.05-0.13] unit decrease	Affymetrix [~ 2500000] (imputed)	N
874	chr9	37934582	37934583	rs149411702	27629369	Gao J	2016-09-15	Neuropsychopharmacology	Genome-Wide Association Study of Loneliness Demonstrates a Role for Common Variation.	Loneliness (linear analysis)	8,490 European ancestry individuals, 1,228 African American individuals, 867 Hispanic American individuals, 175 individuals	NA	9p13.1	SHB	rs149411702-?		2E-6	(EA)	0.376	[0.22-0.53] unit increase	Illumina [7205781] (imputed)	N
874	chr9	37942708	37942709	rs77181999	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9p13.1	NR	rs77181999-C	0.02091	4E-10	(MYO1B)	0.113	NR unit increase	Illumina [1671387] (imputed)	N
874	chr9	37956127	37956128	rs17516806	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	9p13.1	NR	rs17516806-?	NR	9E-6				Affymetrix [NR]	N
874	chr9	37971388	37971389	rs10973627	28060188	Hamet P	2017-01-16	J Hypertens	PROX1 gene CC genotype as a major determinant of early onset of type 2 diabetes in slavic study participants from Action in Diabetes and Vascular Disease: Preterax and Diamicron MR Controlled Evaluation study.	Type 2 diabetes (age of onset)	2,307 Celtic ancestry individuals, 1,102 Slavic ancestry individuals	NA	9p13.1	SHB, SLC25A51, ALDH1B1	rs10973627-?	NR	4E-6	(Celtic)			Affymetrix [5045527] (imputed)	N
874	chr9	38004144	38004145	rs56268063	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	9p13.1		rs56268063-?	NR	4E-11				NR [~ 8900000] (imputed)	N
874	chr9	38010084	38010085	rs4878734	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	9p13.1	SHB	rs4878734-A	0.5114	5E-8		1.0220394		Affymetrix [11880941] (imputed)	N
875	chr9	38020543	38020544	rs4878737	35132056	Mitchell BL	2022-02-07	Nat Commun	Genome-wide association meta-analysis identifies 29 new acne susceptibility loci.	acne vulgaris	20,165 European ancestry cases, 595,231 European ancestry controls	NA	9p13.1	NR	rs4878737-T	0.2568	1E-8		1.08	[1.05-1.11]	Affymetrix, Illumina [7072771] (imputed)	N
875	chr9	38020543	38020544	rs4878737	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	9p13.1	NR	rs4878737-T	0.260129	3E-17		0.029777	[0.023-0.037] unit increase	NR [19129689] (imputed)	N
875	chr9	38035664	38035665	rs1928243	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	9p13.1		rs1928243-?	NR	8E-11				NR [~ 8900000] (imputed)	N
875	chr9	38041141	38041142	rs7873102	20171287	Stein JL	2010-02-17	Neuroimage	Voxelwise genome-wide association study (vGWAS).	Brain structure	740 European ancestry individuals	NA	9p13.1	SHB	rs7873102-?	0.38	6E-7				Illumina [448293]	N
875	chr9	38055127	38055128	rs3849927	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	9p13.1		rs3849927-?	NR	6E-11				NR [~ 8900000] (imputed)	N
875	chr9	38058664	38058665	rs1928244	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	9p13.1		rs1928244-?	NR	4E-9				NR [~ 8900000] (imputed)	N
875	chr9	38074526	38074527	rs78622592	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	9p13.1		rs78622592-C	NR	4E-8		0.0129	[0.0084-0.0174] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
875	chr9	38076778	38076779	rs4570248	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	9p13.1		rs4570248-T	0.27	3E-8		5.54	z score increase	Affymetrix [9061022] (imputed)	N
875	chr9	38084430	38084431	rs62536879	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	9p13.1		rs62536879-T	NR	4E-9		0.0139	[0.0092-0.0186] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
875	chr9	38088243	38088244	rs7019055	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	9p13.1	SHB, ALDH1B1	rs7019055-A		3E-6		0.18	unit increase	Affymetrix [at least 2696785] (imputed)	N
875	chr9	38088243	38088244	rs7019055	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	9p13.1	SHB, ALDH1B1	rs7019055-A		4E-6	(EA)	0.185	unit increase	Affymetrix [at least 2696785] (imputed)	N
875	chr9	38088243	38088244	rs7019055	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	9p13.1	SHB, ALDH1B1	rs7019055-A		7E-9		0.15	unit increase	Affymetrix [at least 2696785] (imputed)	N
876	chr9	38195755	38195756	rs10758481	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	9p13.1		rs10758481-C	NR	5E-9		0.0115	[0.0076-0.0154] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
876	chr9	38195755	38195756	rs10758481	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	9p13.1		rs10758481-C	NR	3E-32		0.0226	[0.019-0.026] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
876	chr9	38195755	38195756	rs10758481	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	9p13.1		rs10758481-C	0.461627	3E-9		0.0200319	[0.013-0.027] unit decrease	Illumina [13478928] (imputed)	N
876	chr9	38195755	38195756	rs10758481	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	9p13.1		rs10758481-C	0.503944	3E-34		0.027321812	[0.023-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
876	chr9	38195755	38195756	rs10758481	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	9p13.1		rs10758481-T	0.495976	4E-11		0.014587978	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
876	chr9	38195755	38195756	rs10758481	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9p13.1	NR	rs10758481-C	0.493032	4E-54				Affymetrix, Illumina [24588908] (imputed)	N
876	chr9	38195755	38195756	rs10758481	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	9p13.1	NR	rs10758481-C	0.5006	1E-50		0.027415	[0.024-0.031] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
876	chr9	38195755	38195756	rs10758481	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9p13.1	NR	rs10758481-C	0.496358	6E-12				Affymetrix, Illumina [23467995] (imputed)	N
876	chr9	38195755	38195756	rs10758481	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	9p13.1	NR	rs10758481-C	0.501631	5E-14		0.014132	[0.01-0.018] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
876	chr9	38196116	38196117	rs10973700	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	9p13.1		rs10973700-C	0.489758	1E-34		0.027486287	[0.023-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
876	chr9	38196116	38196117	rs10973700	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	9p13.1	NR	rs10973700-C	0.486357	1E-12		0.013076	[0.0095-0.0167] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
876	chr9	38196116	38196117	rs10973700	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	9p13.1		rs10973700-?	NR	3E-8				NR [~ 8900000] (imputed)	N
876	chr9	38197032	38197033	rs7861055	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9p13.1	NR	rs7861055-G	0.47102	5E-22				Affymetrix, Illumina [23472807] (imputed)	N
876	chr9	38197078	38197079	rs10125515	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9p13.1	NR	rs10125515-T	0.460924	1E-11				Affymetrix, Illumina [24649327] (imputed)	N
876	chr9	38197186	38197187	rs12343705	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	9p13.1	NR	rs12343705-T	0.490096	5E-10		0.013811405	[0.0095-0.0182] unit decrease	Affymetrix [93095623] (imputed)	N
876	chr9	38197186	38197187	rs12343705	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	9p13.1		rs12343705-T	0.490011	8E-20		0.02020461	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
876	chr9	38197383	38197384	rs12352894	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	9p13.1	Intergenic	rs12352894-C	0.043	3E-6	(AA)	0.284	NR unit decrease	Illumina [NR] (imputed)	N
876	chr9	38198228	38198228	rs11446839	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	9p13.1	NR	rs11446839-I	0.487262	9E-24		0.020559	[0.017-0.025] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
876	chr9	38198228	38198228	rs11446839	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	9p13.1	intergenic	rs11446839-TG	0.4867	3E-16		0.02990532	[0.023-0.037] unit decrease	Affymetrix [~ 2500000] (imputed)	N
876	chr9	38198228	38198228	rs11446839	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	9p13.1	intergenic	rs11446839-TG	0.4866	3E-15		0.0288123	[0.022-0.036] unit decrease	Affymetrix [~ 2500000] (imputed)	N
876	chr9	38200669	38200670	rs2585668	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	9p13.1		rs2585668-C	NR	7E-14		0.0159	[0.012-0.02] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
876	chr9	38200669	38200670	rs2585668	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	9p13.1		rs2585668-C	0.504655	6E-9		0.012931875	[0.0086-0.0173] unit increase	Affymetrix [93095623] (imputed)	N
876	chr9	38254690	38254691	rs7030685	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Azorhizobium abundance in stool	5,959 Finnish ancestry individuals	NA	9p13.1		rs7030685-G	0.474257	2E-8		0.0274235	[0.018-0.037] unit increase	Illumina [7980478] (imputed)	N
877	chr9	38275771	38275772	rs72733235	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	9p13.1	ALDH1B1	rs72733235-T	0.8378	5E-9		0.01716322	[0.011-0.023] unit decrease	Affymetrix [11514654] (imputed)	N
877	chr9	38275771	38275772	rs72733235	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	9p13.1		rs72733235-?	NR	1E-8				NR [~ 8900000] (imputed)	N
877	chr9	38276427	38276428	rs56209921	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Smoking status (ever vs never smokers)	336,066 British ancestry individuals	NA	9p13.1	NR	rs56209921-T	0.163	1E-8		1.039	[1.03-1.05]	NR [8968716] (imputed)	N
877	chr9	38322515	38322516	rs10973748	33948810	Gurinovich A	2021-05-04	Geroscience	Effect of longevity genetic variants on the molecular aging rate.	Longevity (100 years and older)	1,320 European ancestry cases, 2,899 European ancestry controls	312 Ashkenazi Jewish ancestry cases, 638 Ashkenazi Jewish ancestry controls	9p13.1	SHB, ALDH1B1	rs10973748-T	0.0312	2E-9	(EA)	5.969329	[NR] unit increase	Illumina [9039731] (imputed)	N
877	chr9	38367078	38367079	rs186722047	34469433	Ashvetiya T	2021-09-01	PLoS One	Identification of novel genetic susceptibility loci for thoracic and abdominal aortic aneurysms via genome-wide association study using the UK Biobank Cohort.	Abdominal aortic aneurysm	1,363 European, Indian, Caribbean, African ancestry cases, 27,260  European, Indian, Caribbean, African ancestry controls	NA	9p13.1		rs186722047-?	NR	5E-7		2.14296		NR [NR] (imputed)	N
877	chr9	38389513	38389514	rs4142260	33841421	Li J	2021-03-25	Front Immunol	Variants at the MHC Region Associate With Susceptibility to <i>Clostridioides difficile</i> Infection: A Genome-Wide Association Study Using Comprehensive Electronic Health Records.	Clostridioides difficle infection in antibiotics-users	587 European ancestry cases, 3,166 European ancestry controls	NA	9p13.1	ALDH1B1	rs4142260-T	0.466	5E-6		0.74	[0.65-0.84]	Illumina [64973696] (imputed)	N
877	chr9	38395939	38395940	rs2228094	31324189	Kim W	2019-07-19	Respir Res	DSP variants may be associated with longitudinal change in quantitative emphysema.	Emphysema annual change measurement in smokers (percent low attenuation area)	4,427 European ancestry individuals, 1,158 African American individuals	NA	9p13.1	ALDH1B1	rs2228094-T	NR	4E-6		0.19	[0.11-0.27] unit increase	Illumina [NR] (imputed)	N
877	chr9	38397354	38397355	rs3043	31959922	Matoba N	2020-01-20	Nat Hum Behav	GWAS of 165,084 Japanese individuals identified nine loci associated with dietary habits.	Alcohol consumption (drinkers vs non-drinkers)	83,713 Japanese ancestry ever drinkers, 81,371 Japanese ancestry never drinkers	NA	9p13.1	ALDH1B1	rs3043-?	NR	3E-19		0.015	[0.012-0.018] unit decrease	Illumina [6108828] (imputed)	N
878	chr9	38443791	38443792	rs7034061	31935283	Du Z	2020-01-01	Blood Adv	A meta-analysis of genome-wide association studies of multiple myeloma among men and women of African ancestry.	Multiple myeloma	1,813 African American and African ancestry cases, 8,871 African American and African ancestry controls	NA	9p13.1	NR	rs7034061-T	0.13	9E-7		1.32	[1.18-1.48]	Illumina [12683648] (imputed)	N
878	chr9	38450983	38450984	rs4424353	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Large artery stroke	350 Indian ancestry cases, 2,154 Indian ancestry controls	NA	9p13.1		rs4424353-?	NR	3E-6		0.9526092	[0.933432587245913-0.972179713653964]	Illumina [up to 7827597] (imputed)	N
878	chr9	38456364	38456365	rs1110183	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Hyperopia	10,828 European ancestry hyperopia cases, 21,416 European ancestry emmetropia controls	NA	9p13.1	NR	rs1110183-?	NR	5E-7		0.102028	[0.062-0.142] unit decrease	NR [13958389] (imputed)	N
878	chr9	38456364	38456365	rs1110183	22384028	Guo Y	2012-02-24	PLoS One	A genome-wide linkage and association scan reveals novel loci for hypertension and blood pressure traits.	Hypertension	315 Hong Kong Chinese ancestry individuals from 111 families	NA	9p13.1	NR	rs1110183-G	0.46	8E-6				Illumina [503984]	N
878	chr9	38487112	38487113	rs12350396	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,963 Sub-Saharan African ancestry females, 3,931 Sub-Saharan African ancestry males	NA	9p13.1		rs12350396-T	0.85986	3E-7		0.00932545	[0.0019-0.0168] unit increase	Illumina [7666802] (imputed)	N
878	chr9	38487112	38487113	rs12350396	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,931 Sub-Saharan African ancestry males	NA	9p13.1		rs12350396-T	0.851711	8E-6		0.018417	[0.011-0.026] unit decrease	Illumina [13900000] (imputed)	N
878	chr9	38488918	38488919	rs4008155	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	9p13.1	ALDH1B1	rs4008155-?	NR	4E-6	(choline)	0.21544628	[0.12-0.31] unit increase	Affymetrix [at least 2500000] (imputed)	N
879	chr9	38559670	38559671	rs188186076	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in dyslipidemia	295 Korean ancestry cases, 20,474 Korean ancestry controls	NA	9p13.1		rs188186076-A	0.02953	7E-6		2.221	[1.57-3.14399999999999]	Affymetrix [7975321] (imputed)	N
879	chr9	38638835	38638836	rs10814727	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia	11,361 European ancestry female cases, 18,119 European ancestry female controls, 20,206 European ancestry male cases, 19,375 European ancestry male controls	NA	9p13.1	FAM201A, CNTNAP3	rs10814727-A	0.8221	6E-6	(female)	0.1132	[0.064-0.162] unit decrease	NR [NR] (imputed)	N
879	chr9	38645054	38645055	rs10973956	25158072	Yu D	2014-10-31	Am J Psychiatry	Cross-disorder genome-wide analyses suggest a complex genetic relationship between Tourette's syndrome and OCD.	Tourette's syndrome or obsessive-compulsive disorder	1,310 Ashkenazi Jewish, South African Afrikaner ancestry, and other European ancestry OCD cases, 834 Ashkenazi Jewish, French Canadian and other European ancestry Tourette's Syndrome cases, 579 Ashkenazi Jewish, South African Afrikaner ancestry, French Canadian and other European ancestry OCD and Tourette's syndrome cases, 4,975 European ancestry controls, 338 Ashkenazi Jewish controls, 196 French Canadian controls, 158 South African Afrikaner ancestry controls, 290 European ancestry OCD parent-child trios	NA	9p13.1	U6, FAM201A, DQ596352, DQ590589, DQ587539, DQ573539, ANKRD18A	rs10973956-A	0.16	7E-6		1.23	[NR]	Illumina [7659573] (imputed)	N
880	chr9	38675464	38675465	rs7039377	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	9p13.1	LOC647051	rs7039377-A	0.496	2E-6	(Total glutathione )	0.03	[NR] umol/L increase	Illumina [899892]	N
880	chr9	38688621	38688622	rs139840550	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Stromal-cell-derived factor 1 alpha levels	5,998 Finnish ancestry individuals	NA	9p13.1	NR	rs139840550-G		4E-6		0.1834	[0.076-0.291] SD units decrease	NR [10700000] (imputed)	N
880	chr9	38692024	38692025	rs61499291	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Monocyte chemoattractant protein-1 levels	8,293 Finnish ancestry individuals	NA	9p13.1	NR	rs61499291-C		9E-6		0.2143	[0.12-0.31] SD units increase	NR [10700000] (imputed)	N
880	chr9	38711005	38711006	rs56249755	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		9p13.1	Intergenic	rs56249755-A	0.939	5E-7	(liability model)	0.16	[0.1-0.22] unit decrease	NR [19725427] (imputed)	N
880	chr9	38750578	38750579	rs184891496	23319000	Luykx JJ	2013-01-15	Mol Psychiatry	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA/MHPG ratio)	up to 398 European ancestry individuals	NA	9p13.1	intergenic	rs184891496-C		7E-6		0.284	unit increase	Illumina [5767231] (imputed)	N
881	chr9	38805577	38805578	rs10974058	30694715	Sakornsakolpat P	2019-01-29	Am J Respir Cell Mol Biol	Genome-Wide Association Analysis of Single Breath Diffusing Capacity of Carbon Monoxide (DLCO).	Diffusing capacity of carbon monoxide	2,584 European ancestry individuals with chronic obstructive pulmonary disease, 3,002 European ancestry healthy individuals, 343 African American individuals with chronic obstructive pulmonary disease, 1,006 African American healthy individuals	NA	9p13.1	ANKRD18A, SPATA31A1	rs10974058-C	0.15	3E-6	(EA)	0.13	0.08-0.19 unit decrease	Illumina [NR] (imputed)	N
883	chr9	39083497	39083498	rs2210426	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris color (a* coordinate)	329 South Asian ancestry individuals		9p12	CNTNAP3	rs2210426-A	0.293269	1E-6		0.414506	[0.25-0.58] unit decrease	Illumina [640625] (imputed)	N
885	chr9	39358954	39358955	rs1199015110	34518561	Urbanek ME	2021-09-13	Sci Rep	Genetic predisposition to tinnitus in the UK Biobank population.	Tinnitus (chronic, bothersome)	226 male European ancestry cases, 7,315 male European ancestry controls	NA	9p12		rs1199015110-?	NR	3E-6				IDT xGen Exome Sequencing Research Panel v1.0	N
921	chr9	44118418	44118419	rs28575663	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	9p11.1	NR	rs28575663-?	NR	8E-15		7.762	NR z score decrease	Illumina [at least 830937] (imputed)	N
927	chr9	44872151	44872152	rs138877551	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	9q13	NR	rs138877551-?	NR	4E-17		8.408	NR z score decrease	Illumina [at least 830937] (imputed)	N
1109	chr9	68776713	68776714	rs77987518	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals		NR	rs77987518-?	NR	1E-9		6.068	NR z score decrease	Illumina [at least 830937] (imputed)	N
1125	chr9	70839929	70839930	rs11143370	32141793	Garman L	2020-03-06	Ocul Immunol Inflamm	Genome-Wide Association Study of Ocular Sarcoidosis Confirms HLA Associations and Implicates Barrier Function and Autoimmunity in African Americans.	Ocular sarcoidosis	260 African American cases, 1,551 African American controls	NA	9q21.11	NR	rs11143370-C	NR	8E-6		1.634	[1.32-2.03]	Illumina [13976150] (imputed)	N
1127	chr9	71150692	71150693	rs7028925	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	9q21.11	NR	rs7028925-?	NR	5E-6		1.092	[0.68-1.51] unit increase	Illumina [at least 560000] (imputed)	N
1127	chr9	71155005	71155006	rs6560203	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	9q21.11		rs6560203-?	NR	7E-10				NR [~ 8900000] (imputed)	N
1127	chr9	71156294	71156295	rs10120859	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	9q21.11	PIP5K1B	rs10120859-T	0.816	5E-10		0.287	[0.032-0.542] ml/min/1.73m2 decrease	Affymetrix, Illumina [at least 5248638] (imputed)	N
1127	chr9	71167877	71167878	rs17085775	27723756	Wang J	2016-10-10	Nat Genet	Genome-wide association analysis identifies variation in vitamin D receptor and other host factors influencing the gut microbiota.	Gut microbiota (bacterial taxa)	1,812 European ancestry individuals	NA	9q21.11	C9orf71	rs17085775-C	NR	2E-8	(OTU10032 unclassified Enterobacteriaceae)	1.03	unit decrease	Affymetrix, Illumina [6344846] (imputed)	N
1128	chr9	71181314	71181315	rs187537945	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	9q21.11	Intergenic	rs187537945-G	NR	4E-6		0.201294	[0.12-0.29] unit decrease	Illumina [13520550] (imputed)	N
1128	chr9	71185991	71185992	rs9644997	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	9q21.11	PGM5	rs9644997-?	NR	8E-6	(PC 36:2)	0.2491406	[0.14-0.36] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1128	chr9	71186647	71186648	rs41508744	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	9q21.11	NR	rs41508744-?	NR	7E-19				Affymetrix [NR]	N
1128	chr9	71198013	71198014	rs17479566	30217807	Robinson-Cohen C	2018-09-14	J Am Soc Nephrol	Genetic Variants Associated with Circulating Fibroblast Growth Factor 23.	Circulating fibroblast growth factor 23 levels	16,624 European ancestry individuals	4,443 African ancestry individuals	9q21.11	RP11-274B18.4	rs17479566-T	0.2207	2E-9	(EA)	0.0313	[0.022-0.041] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1128	chr9	71229178	71229179	rs7864204	23192594	Velez Edwards DR	2012-11-29	Hum Genet	Gene-environment interactions and obesity traits among postmenopausal African-American and Hispanic women in the Women's Health Initiative SHARe Study.	Body mass index (recreational physical activity interaction)	8,203 African American females, 3,484 Hispanic females	NA	9q21.11	LOC347097, PIP5K1B	rs7864204-A	0.44	9E-7	(AA)	0.04	[0.02-0.06] unit decrease	Affymetrix [706791]	N
1129	chr9	71332239	71332240	rs10116755	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	9q21.11	NR	rs10116755-G	NR	3E-19		0.0338	[0.026-0.041] unit decrease	Affymetrix [9000000] (imputed)	N
1129	chr9	71344801	71344825	rs386734729	32766472	Park SL	2020-06-25	Hepatol Commun	Genome-Wide Association Study of Liver Fat: The Multiethnic Cohort Adiposity Phenotype Study.	Nonalcoholic fatty liver disease	37 African American cases, 177 Japanese American cases, 140 Latino cases, 85 Native Hawaiian cases, 67 European ancestry cases, 218 African American controls, 221 Japanese American controls, 182 Latino controls, 158 Native Hawaiian controls, 244 European ancestry controls	NA	9q21.11	NR	rs386734729-?	NR	3E-7		1.8518518	[1.47-2.38]	Illumina [9789995] (imputed)	N
1129	chr9	71375679	71375680	rs11143636	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	9q21.11	NR	rs11143636-?	NR	3E-6		4.688	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1129	chr9	71380266	71380267	rs117998181	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	9q21.11	NR	rs117998181-C	NR	1E-12		0.0524	[0.038-0.067] unit decrease	Affymetrix [9000000] (imputed)	N
1129	chr9	71380266	71380267	rs117998181	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	9q21.11	NR	rs117998181-C	NR	3E-13		0.0537	[0.039-0.068] unit increase	Affymetrix [9000000] (imputed)	N
1129	chr9	71432173	71432174	rs2039424	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	9q21.11		rs2039424-A	NR	2E-9		0.0111	[0.0076-0.0146] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
1129	chr9	71432173	71432174	rs2039424	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	9q21.11		rs2039424-A	NR	6E-10		0.0123	[0.0084-0.0162] unit decrease	Affymetrix, Illumina [20538307] (imputed)	N
1129	chr9	71432173	71432174	rs2039424	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	9q21.11	PIP5K1B	rs2039424-A	0.6232	1E-40	(EA)	0.0048	[0.004-0.0056] unit increase	Affymetrix [NR] (imputed)	N
1129	chr9	71432173	71432174	rs2039424	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	9q21.11	PIP5K1B	rs2039424-A	0.6356	2E-62		0.0044	[0.0038-0.005] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
1129	chr9	71432173	71432174	rs2039424	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	9q21.11	PIP5K1B	rs2039424-A	0.6232	3E-56		0.0048	[0.004-0.0056] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
1129	chr9	71432173	71432174	rs2039424	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Chronic kidney disease	64,164 European and unknown ancestry cases, 561,055 European and unknown ancestry controls	NA	9q21.11	PIP5K1B	rs2039424-G	0.36	5E-8		1.0443864	[1.03-1.06]	Affymetrix, Illumina [9585923] (imputed)	N
1129	chr9	71432173	71432174	rs2039424	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	9q21.11	FAM122A	rs2039424-G	0.3554	7E-31		11.553	NR z score decrease	Illumina [26237160] (imputed)	N
1129	chr9	71432173	71432174	rs2039424	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	9q21.11	PIP5K1B	rs2039424-?	NR	1E-23				Affymetrix, Illumina [at least 5248638] (imputed)	N
1129	chr9	71433211	71433212	rs1556751	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in non-diabetics	152,624 European ancestry individuals, 36,369 African American individuals	NA	9q21.11	PIP5K1B	rs1556751-A	0.617	2E-13		0.385	[0.28-0.49] unit increase	Affymetrix [NR] (imputed)	N
1129	chr9	71433211	71433212	rs1556751	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in diabetes	70,762 European ancestry individuals, 20,967 African American individuals	NA	9q21.11	PIP5K1B	rs1556751-A	0.618	6E-9		0.516	[0.34-0.69] unit increase	Affymetrix [NR] (imputed)	N
1129	chr9	71433211	71433212	rs1556751	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	9q21.11	PIP5K1B	rs1556751-A	0.636	5E-33		0.0043	[0.0037-0.0049] unit increase	Affymetrix [NR] (imputed)	N
1130	chr9	71434464	71434465	rs10746942	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	9q21.11	PIP5K1B	rs10746942-G	0.322	1E-26		0.596	[0.41-0.78] ml/min/1.73m2 decrease	Affymetrix, Illumina [at least 5248638] (imputed)	N
1130	chr9	71434464	71434465	rs10746942	28452372	Gorski M	2017-04-28	Sci Rep	1000 Genomes-based meta-analysis identifies 10 novel loci for kidney function.	Glomerular filtration rate (creatinine)	110,517 European ancestry individuals		9q21.11	PIP5K1B	rs10746942-A	NR	4E-18		0.0086	[0.0068-0.0104] unit increase	Affymetrix, Illumina [up to 10971307] (imputed)	N
1130	chr9	71434706	71434707	rs4744712	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Creatinine levels	110,051 European ancestry individuals	NA	9q21.11		rs4744712-A	0.401196	1E-11		0.0244808	[0.017-0.032] unit increase	NR [11722792] (imputed)	N
1130	chr9	71434706	71434707	rs4744712	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	9q21.11		rs4744712-C	NR	4E-52		0.0249	[0.022-0.028] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
1130	chr9	71434706	71434707	rs4744712	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	9q21.11	NR	rs4744712-A	0.4	5E-13		0.0134	[0.0097-0.0171] unit decrease	NR [NR]	N
1130	chr9	71434706	71434707	rs4744712	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Fibroblast growth factor 23 levels	21,758 European ancestry individuals	9,173 individuals	9q21.11		rs4744712-A	0.39	2E-12		0.0587	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1130	chr9	71434706	71434707	rs4744712	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Estimated glomerular filtration rate	8,261 African American individuals, 18,548 Hispanic/Latino individuals, 150 Asian ancestry individuals, 602 Native American ancestry individuals, 339 individuals	NA	9q21.11	NR	rs4744712-?	NR	1E-8		0.8742305	[0.57-1.18] unit increase	Illumina [30341014] (imputed)	N
1130	chr9	71434706	71434707	rs4744712	27588450	Mahajan A	2016-09-01	Am J Hum Genet	Trans-ethnic Fine Mapping Highlights Kidney-Function Genes Linked to Salt Sensitivity.	Glomerular filtration rate	23,553 European ancestry individuals, 23,536 Japanese individuals, 16,325 Hispanic individuals, 8,224 African American individuals	NA	9q21.11	PIP5K1B	rs4744712-A	NR	3E-11		0.753	[0.53-0.97] unit decrease	Affymetrix, Illumina [at least 6581000] (imputed)	N
1130	chr9	71434706	71434707	rs4744712	26831199	Pattaro C	2016-01-21	Nat Commun	Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function.	Glomerular filtration rate in non diabetics (creatinine)	118,448 European ancestry individuals	36,433 European ancestry individuals	9q21.11	PIP5K1B	rs4744712-A	NR	7E-15		0.0072	[0.0054-0.009] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1130	chr9	71434706	71434707	rs4744712	26831199	Pattaro C	2016-01-21	Nat Commun	Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function.	Glomerular filtration rate (creatinine)	133,413 European ancestry individuals	42,166 European ancestry individuals, up to 16,471 African ancestry individuals, up to 42,296 Asian ancestry individuals	9q21.11	PIP5K1B	rs4744712-A	0.4	4E-15	(EA)	0.0071	[0.0053-0.0089] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1130	chr9	71434706	71434707	rs4744712	20383146	Kottgen A	2010-04-11	Nat Genet	New loci associated with kidney function and chronic kidney disease.	Chronic kidney disease	Up to 67,093 European ancestry individuals	Up to 22,982 European ancestry individuals	9q21.11	PIP5K1B, FAM122A	rs4744712-A	0.39	8E-14	(eGFRcrea)	0.01	[0.008-0.016] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1130	chr9	71439348	71439349	rs10869365	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	9q21.11	NR	rs10869365-T	NR	6E-16		0.0221	[0.017-0.027] unit increase	Affymetrix [9000000] (imputed)	N
1130	chr9	71439348	71439349	rs10869365	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	9q21.11	NR	rs10869365-T	NR	5E-32		0.0307	[0.026-0.036] unit increase	Affymetrix [9000000] (imputed)	N
1130	chr9	71439348	71439349	rs10869365	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	9q21.11	NR	rs10869365-T	NR	3E-15		0.0206	[0.016-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
1130	chr9	71439348	71439349	rs10869365	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	9q21.11	NR	rs10869365-T	NR	1E-32		0.0311	[0.026-0.036] unit decrease	Affymetrix [9000000] (imputed)	N
1130	chr9	71458175	71458176	rs4237268	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Creatinine levels	69,591 European ancestry individuals	NA	9q21.11	RP11-203L2.4, PIP5K1B	rs4237268-A	0.654663	5E-13		0.04639	[0.035-0.058] unit decrease	Illumina [24961484] (imputed)	N
1130	chr9	71467134	71467135	rs11144001	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	9q21.11		rs11144001-T	NR	1E-21		0.0212	[0.017-0.026] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
1130	chr9	71467134	71467135	rs11144001	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	9q21.11	NR	rs11144001-T	0.4715	3E-22		0.00216	[0.0017-0.0026] unit decrease	Affymetrix [NR] (imputed)	N
1130	chr9	71471911	71471912	rs6560397	23470693	Zeng Z	2013-03-07	J Dent Res	Genome-wide association studies of pit-and-fissure- and smooth-surface caries in permanent dentition.	Pit-and-Fissure caries	996 European ancestry individuals		9q21.11	NR	rs6560397-T	0.4671	2E-7		1.289	[NR] unit decrease	Illumina [1200000] (imputed)	N
1130	chr9	71486719	71486724	rs1168460561	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9q21.11	NR	rs1168460561-G	0.0122	1E-8	(FDXR)	0.0382	NR unit increase	Illumina [1671387] (imputed)	N
1130	chr9	71500639	71500640	rs116872487	29698431	Roosenboom J	2018-04-26	PLoS One	Mapping genetic variants for cranial vault shape in humans.	Maximum cranial length	4,419 European ancestry individuals	NA	9q21.11	NR	rs116872487-T	0.03007	4E-6		1.47	[0.39-2.55] unit increase	Illumina [at least 567677] (imputed)	N
1130	chr9	71508121	71508122	rs12686613	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	9q21.11	NR	rs12686613-?	NR	1E-6		4.815	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1130	chr9	71518026	71518027	rs7042283	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	9q21.11	PIP5K1B	rs7042283-T	0.8509	3E-9		0.2202	[0.15-0.29] mmHg decrease	Affymetrix [NR] (imputed)	N
1130	chr9	71540375	71540376	rs10115104	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	9q21.11	NR	rs10115104-C	NR	4E-10		0.0292	[0.02-0.038] unit increase	Affymetrix [9000000] (imputed)	N
1130	chr9	71558376	71558377	rs1056265	28030426	Mahmoudpour SH	2017-03-27	Pharmacogenet Genomics	Meta-analysis of genome-wide association studies on the intolerance of angiotensin-converting enzyme inhibitors.	Angiotensin-converting enzyme inhibitor intolerance	972 European ancestry intolerant individuals, 4,189 European ancestry tolerant individuals	NA	9q21.11	PIP5K1B	rs1056265-?	0.298392	6E-6		1.302217	[1.161181-1.460382]	Affymetrix, Illumina [NR] (imputed)	N
1131	chr9	71581806	71581807	rs12344543	34074324	Wan JY	2021-06-01	Diabetol Metab Syndr	Genome-wide association analysis of metabolic syndrome quantitative traits in the GENNID multiethnic family study.	Fasting glucose	281 African American individuals from 73 families, 516 European ancestry individuals from 75 families, 125 Japanese American individuals from 15 families, 598 Mexican American individuals from 96 families	NA	9q21.11	AK057188	rs12344543-T	0.07	9E-7	(African American)	0.7	[0.43-0.97] unit decrease	Illumina [up to 13042663] (imputed)	N
1131	chr9	71613946	71613947	rs62569223	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	9q21.11	PIP5K1B	rs62569223-G	0.252399	2E-11		0.017728297	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1131	chr9	71614255	71614256	rs17407816	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	9q21.11	PRKACG	rs17407816-?	NR	5E-7	(serine)	0.27883992	[0.17-0.39] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1131	chr9	71626507	71626508	rs28461568	33816493	Cai R	2021-03-18	Front Cell Dev Biol	Genome-Wide Association Identifies Risk Pathways for SAPHO Syndrome.	SAPHO syndrome	49 Chinese ancestry cases, 121 Chinese ancestry controls	NA	9q21.11	NR	rs28461568-?	NR	8E-8		0.09177	NR	Illumina [802276]	N
1131	chr9	71636700	71636701	rs35687468	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	9q21.11		rs35687468-?	NR	6E-8				NR [~ 8900000] (imputed)	N
1131	chr9	71654043	71654044	rs2481599	31504550	Bradfield JP	2019-07-05	Hum Mol Genet	A Trans-ancestral Meta-Analysis of Genome-Wide Association Studies Reveals Loci Associated with Childhood Obesity.	Childhood obesity	8,613 European ancestry cases, 3,213 African American cases, 69 Moroccan ancestry cases, 986 Hispanic/Latino cases, 124 East Asian ancestry cases, 12,696 European ancestry controls, 1,392 African American controls, 64 Moroccan ancestry controls, 993 Hispanic/Latino controls, 454 East Asian ancestry controls	NA	9q21.11	NR	rs2481599-A	NR	3E-7	(East Asian)	0.9141	[0.56-1.26] unit increase	Affymetrix, Illumina [up to 15123508] (imputed)	N
1131	chr9	71655594	71655595	rs7030480	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	9q21.11	FXN, PRKACG, PIP5K1B, TJP2	rs7030480-A	NR	1E-6	(wake after sleep onset, weekdays)	0.0993	[0.059-0.14] unit decrease	Affymetrix [7141204] (imputed)	N
1131	chr9	71668430	71668431	rs79687921	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 14, intercanthal width)	2,187 European ancestry individuals	NA	9q21.11	NR	rs79687921-G	0.4289	2E-6		0.1435	[0.085-0.202] unit increase	Illumina [10677593] (imputed)	N
1132	chr9	71699215	71699216	rs4596713	29397368	Meng W	2018-01-31	EBioMedicine	A Genome-Wide Association Study Finds Genetic Associations with Broadly-Defined Headache in UK Biobank (N=223,773).	Headache	74,461 British ancestry cases, 149,321 British ancestry controls	NA	9q21.11	FXN	rs4596713-T	NR	2E-8		0.0078	[0.0051-0.0105] unit decrease	Affymetrix [9304965] (imputed)	N
1132	chr9	71700459	71700460	rs7038541	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	9q21.11		rs7038541-C	0.19554	8E-8		0.046226	[0.029-0.063] unit decrease	Affymetrix [15580782] (imputed)	N
1132	chr9	71703498	71703499	rs12555832	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	9q21.11		rs12555832-A	NR	2E-10		0.0657	[0.046-0.086] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1132	chr9	71709455	71709456	rs111820018	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	9q21.11	FXN	rs111820018-A	0.0960907	5E-11		0.06728294	[0.047-0.087] unit increase	Affymetrix [7288503] (imputed)	N
1132	chr9	71724125	71724126	rs7870657	25562672	Byrne EM	2014-12-09	J Clin Psychiatry	Seasonality shows evidence for polygenic architecture and genetic correlation with schizophrenia and bipolar disorder.	Seasonality	3,269 European ancestry individuals	887 Old order Amish individuals	9q21.11	FXN	rs7870657-A	NR	9E-6		0.41	[0.23-0.59] unit decrease	Affymetrix, Illumina [2354422] (imputed)	N
1132	chr9	71745072	71745073	rs7024062	32126890	Ter Hark SE	2020-03-04	J Psychopharmacol	A new genetic locus for antipsychotic-induced weight gain: A genome-wide study of first-episode psychosis patients using amisulpride (from the OPTiMiSE cohort).	Weight gain in amisulpride-treated first-episode psychosis	184 European ancestry individuals, 9 African ancestry individuals, 6 Hispanic/Latin American individuals, 3 South Asian ancestry individuals, 2 East Asian ancestry individuals, 2 individuals	NA	9q21.11	TJP2	rs7024062-A	0.1931	2E-6		0.5885	NR unit decrease	Illumina [4533042] (imputed)	N
1132	chr9	71766118	71766119	rs11145461	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	9q21.11	FXN, TJP2, APBA1, KLF9, TRPM3	rs11145461-?		3E-39				Affymetrix, Illumina [NR] (imputed)	N
1132	chr9	71766118	71766119	rs11145461	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Myopia (age of diagnosis)	104,293 European ancestry individuals	NA	9q21.11	NR	rs11145461-T	0.21	3E-15		0.0668	[0.05-0.083] unit decrease	Illumina [~ 10600000] (imputed)	N
1132	chr9	71766592	71766593	rs11145465	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	9q21.11	TJP2	rs11145465-A	0.2122	1E-21		9.546	[NR] z score decrease	Affymetrix, Illumina [~ 11000000] (imputed)	N
1132	chr9	71766592	71766593	rs11145465	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent	41,073 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	9q21.11	NR	rs11145465-A	0.2197	1E-8	(EA)	0.1011	[0.066-0.136] unit decrease	Affymetrix, Illumina [~ 9300000] (imputed)	N
1132	chr9	71766592	71766593	rs11145465	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent	41,073 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	9q21.11	NR	rs11145465-A	0.2145	5E-9		0.1012	[0.067-0.135] unit decrease	Affymetrix, Illumina [~ 9300000] (imputed)	N
1132	chr9	71766592	71766593	rs11145465	23396134	Verhoeven VJ	2013-02-10	Nat Genet	Genome-wide meta-analyses of multiancestry cohorts identify multiple new susceptibility loci for refractive error and myopia.	Refractive error	37,382 European ancestry individuals, 3,995 Chinese ancestry individuals, 2,273 Malay ancestry individuals, 2,108 Indian ancestry individuals	NA	9q21.11	TJP2	rs11145465-A	0.25	7E-9		0.124	[0.083-0.165] unit decrease	Affymetrix, Illumina [2500000] (imputed)	N
1132	chr9	71770938	71770939	rs11145488	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Myopia	106,086 European ancestry cases, 85,757 European ancestry controls	NA	9q21.11	FXN, TJP2	rs11145488-?	NR	7E-21		1.0869565	[1.07-1.11]	Illumina [13762925] (imputed)	N
1132	chr9	71770938	71770939	rs11145488	27020472	Fan Q	2016-03-29	Nat Commun	Meta-analysis of gene-environment-wide association scans accounting for education level identifies additional loci for refractive error.	Spherical equivalent (joint analysis main effects and education interaction)	2,604 Erasmus Rucphen population isolate individuals, 456 Sardinian population isolate individuals, 36,976 European ancestry individuals, 5,971 East Asian ancestry individuals, 2,256 Malay ancestry individuals, 2,088 Indian ancestry individuals	NA	9q21.11	TJP2	rs11145488-A	0.22	2E-9	(European ancestry)			Affymetrix, Illumina [up to 7331415] (imputed)	N
1132	chr9	71770938	71770939	rs11145488	27020472	Fan Q	2016-03-29	Nat Commun	Meta-analysis of gene-environment-wide association scans accounting for education level identifies additional loci for refractive error.	Spherical equivalent (joint analysis main effects and education interaction)	2,604 Erasmus Rucphen population isolate individuals, 456 Sardinian population isolate individuals, 36,976 European ancestry individuals, 5,971 East Asian ancestry individuals, 2,256 Malay ancestry individuals, 2,088 Indian ancestry individuals	NA	9q21.11	TJP2	rs11145488-A	0.21	2E-9				Affymetrix, Illumina [up to 7331415] (imputed)	N
1132	chr9	71789103	71789104	rs62567129	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	9q21.11	TJP2	rs62567129-?	NR	3E-8		0.4451	[0.28-0.61] unit increase	Affymetrix [11100000] (imputed)	N
1132	chr9	71791546	71791547	rs1538583	29703844	van Zuydam NR	2018-04-27	Diabetes	A Genome-Wide Association Study of Diabetic Kidney Disease in Subjects With Type 2 Diabetes.	Glomerular filtration rate in type 2 diabetes	9,197 European ancestry individuals	9,333 European ancestry individuals, 7,405 Asian individuals, 975 Chinese ancestry individuals, 384 Indian ancestry individuals, 307 Malay ancestry individuals	9q21.11	NR	rs1538583-?		4E-6		2.95	[1.70-4.19] unit increase	Affymetrix, Illumina [up to 9343778] (imputed)	N
1132	chr9	71827134	71827135	rs56207218	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	9q21.11		rs56207218-C	0.21166	3E-8		0.046173	[0.03-0.063] unit decrease	Affymetrix [15580782] (imputed)	N
1133	chr9	71830307	71830308	rs2309426	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	9q21.11	NR	rs2309426-G	0.383815	2E-11		0.01291	[0.0091-0.0167] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1133	chr9	71834379	71834380	rs11145746	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	9q21.11	NR	rs11145746-G		2E-10		0.09	[0.07-0.11] unit increase	NR [NR]	N
1133	chr9	71865931	71865932	rs2282335	22044751	Foster MC	2011-11-01	BMC Med Genet	Heritability and genome-wide association analysis of renal sinus fat accumulation in the Framingham Heart Study.	Renal sinus fat	2,809 European ancestry individuals	NA	9q21.11	TJP2	rs2282335-A	0.36	4E-6		0.171	[0.098-0.244] unit increase	Affymetrix [~ 2500000] (imputed)	N
1133	chr9	71929208	71929209	rs184144039	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	9q21.12		rs184144039-G	NR	3E-8		0.0825	[0.053-0.112] unit increase	Affymetrix, Illumina [20535873] (imputed)	N
1133	chr9	71931387	71931388	rs11138118	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Lateral ventricle temporal horn volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	9q21.12	NR	rs11138118-?		2E-6				Illumina [4322238] (imputed)	N
1133	chr9	71943001	71943002	rs3750552	22925353	Lee HJ	2012-08-25	J Affect Disord	A genome-wide association study of seasonal pattern mania identifies NF1A as a possible susceptibility gene for bipolar disorder.	Bipolar disorder	2,191 European ancestry cases, 1,434 European ancestry controls	NA	9q21.12	PGM5	rs3750552-?	NR	5E-6	(NSM vs. Control)	1.679	[NR]	Affymetrix [703012]	N
1133	chr9	71955716	71955717	rs12344245	29695241	Charmet R	2018-04-25	Cardiovasc Diabetol	Novel risk genes identified in a genome-wide association study for coronary artery disease in patients with type 1 diabetes.	Coronary artery disease in type 1 diabetes	434 European ancestry cases with coronary artery disease, 3,123 European ancestry cases without coronary artery disease	585 cases with coronary artery disease, 2,612 cases without coronary artery disease	9q21.12	FAM189A2	rs12344245-G	0.035	9E-6	(EA)	2.52	[NR]	Illumina [6728637] (imputed)	N
1133	chr9	71955716	71955717	rs12344245	29695241	Charmet R	2018-04-25	Cardiovasc Diabetol	Novel risk genes identified in a genome-wide association study for coronary artery disease in patients with type 1 diabetes.	Coronary artery disease in type 1 diabetes	434 European ancestry cases with coronary artery disease, 3,123 European ancestry cases without coronary artery disease	585 cases with coronary artery disease, 2,612 cases without coronary artery disease	9q21.12	FAM189A2	rs12344245-G	0.035	9E-6		1.85	[1.41-2.43]	Illumina [6728637] (imputed)	N
1134	chr9	71961259	71961260	rs73455199	33430342	Younes N	2021-01-07	J Pers Med	A Whole-Genome Sequencing Association Study of Low Bone Mineral Density Identifies New Susceptibility Loci in the Phase I Qatar Biobank Cohort.	Total body bone mineral density	3,000 Qatari ancestry individuals	NA	9q21.12		rs73455199-G	NR	3E-8				Illumina [1084750]	N
1134	chr9	72033733	72033734	rs142250018	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9q21.12	NR	rs142250018-T	0.01045	4E-9	(SBDS)	0.06539	NR unit increase	Illumina [1671387] (imputed)	N
1134	chr9	72046039	72046040	rs1105307	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	9q21.12	NR	rs1105307-?	NR	4E-6		4.616	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1134	chr9	72046039	72046040	rs1105307	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability (MTAG)	436,124 European ancestry individuals	NA	9q21.12	APBA1	rs1105307-?	NR	1E-10		6.462	z score decrease	Affymetrix, Illumina, Perlegen [7333576] (imputed)	N
1134	chr9	72046039	72046040	rs1105307	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability	107,207 European ancestry individuals	NA	9q21.12	APBA1	rs1105307-?	NR	4E-7		5.078	z score decrease	Affymetrix, Illumina [7357080] (imputed)	N
1134	chr9	72055157	72055158	rs7033137	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	9q21.12		rs7033137-C	0.7743	3E-7		35.88011	z score increase	NR [6814003]	N
1134	chr9	72055157	72055158	rs7033137	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	9q21.12	APBA1	rs7033137-C	NR	2E-10		0.032158274	[0.022-0.042] unit increase	Affymetrix [NR]	N
1134	chr9	72055157	72055158	rs7033137	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	9q21.12	NR	rs7033137-C	0.7594	2E-8		0.014655569	NR unit increase	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
1134	chr9	72055174	72055175	rs7049022	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	9q21.12	APBA1	rs7049022-A	NR	1E-8		0.03220035	[0.021-0.043] unit increase	Affymetrix [NR]	N
1134	chr9	72076546	72076547	rs4744899	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	9q21.12	APBA1	rs4744899-?	NR	1E-11		0.013456284	[0.0096-0.0173] unit increase	NR [7306098]	N
1134	chr9	72087235	72087236	rs4744901	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	9q21.12	NR	rs4744901-C	NR	8E-6		1.098901	[NR]	Illumina [7158791] (imputed)	N
1135	chr9	72103313	72103314	rs11138902	29520040	Coleman JRI	2018-03-08	Mol Psychiatry	Biological annotation of genetic loci associated with intelligence in a meta-analysis of 87,740 individuals.	Extremely high intelligence	1,247 European ancestry cases, 86,493 European ancestry controls	NA	9q21.12	APBA1	rs11138902-A	0.537	2E-9		6.02	NR z score increase increase	Illumina [up to 12595966] (imputed)	N
1135	chr9	72103313	72103314	rs11138902	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	9q21.12	ENSG00000229312	rs11138902-A	NR	2E-9		0.017563017	[0.012-0.023] unit increase	Affymetrix [NR]	N
1135	chr9	72103313	72103314	rs11138902	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability	107,207 European ancestry individuals	NA	9q21.12	ENSG00000229312	rs11138902-?	NR	5E-9		5.834	z score increase	Affymetrix, Illumina [7357080] (imputed)	N
1135	chr9	72103313	72103314	rs11138902	28530673	Sniekers S	2017-05-22	Nat Genet	Genome-wide association meta-analysis of 78,308 individuals identifies new loci and genes influencing human intelligence.	Intelligence	up to 58,799 European ancestry adults, up to 19,509 European ancestry children	NA	9q21.12	APBA1	rs11138902-A	0.5374	6E-8	(Adults)	5.408	z score increase	Affymetrix, Illumina [12104294] (imputed)	N
1135	chr9	72103313	72103314	rs11138902	28530673	Sniekers S	2017-05-22	Nat Genet	Genome-wide association meta-analysis of 78,308 individuals identifies new loci and genes influencing human intelligence.	Intelligence	up to 58,799 European ancestry adults, up to 19,509 European ancestry children	NA	9q21.12	APBA1	rs11138902-A	0.5374	4E-8		5.485	z score increase	Affymetrix, Illumina [12104294] (imputed)	N
1135	chr9	72105404	72105405	rs7859472	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	9q21.12	ENSG00000229312	rs7859472-A	NR	4E-8		0.03060258	[0.02-0.042] unit increase	Affymetrix [NR]	N
1135	chr9	72110561	72110562	rs11138947	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	9q21.12		rs11138947-?	NR	8E-9				NR [~ 8900000] (imputed)	N
1135	chr9	72110561	72110562	rs11138947	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	9q21.12	Intergenic	rs11138947-T	0.7187	2E-11	(MTAG)	0.0134	[0.0095-0.0173] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1135	chr9	72110561	72110562	rs11138947	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	9q21.12	Intergenic	rs11138947-T	0.7187	2E-14	(MTAG)	0.0141	[0.011-0.018] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1135	chr9	72110561	72110562	rs11138947	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	9q21.12		rs11138947-T	0.7236	2E-11		0.0105	[0.0074-0.0136] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1135	chr9	72110561	72110562	rs11138947	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	9q21.12	Intergenic	rs11138947-T	0.7236	2E-14	(MTAG)	0.0112	[0.0083-0.0141] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1135	chr9	72110561	72110562	rs11138947	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	9q21.12	Intergenic	rs11138947-T	0.7227	1E-13	(MTAG)	0.0189	[0.014-0.024] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1135	chr9	72110561	72110562	rs11138947	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	9q21.12	Intergenic	rs11138947-T	0.7227	5E-8		0.0174	[0.011-0.024] unit increase	Affymetrix, Illumina [10100000] (imputed)	N
1135	chr9	72209643	72209644	rs6559648	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	9q21.12	NR	rs6559648-?	NR	2E-14				Affymetrix [NR]	N
1136	chr9	72278956	72278957	rs144177557	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	9q21.12	APBA1	rs144177557-T	NR	9E-6		0.11043	[0.062-0.159] unit increase	Illumina [13520550] (imputed)	N
1136	chr9	72349103	72349104	rs139747326	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (processing speed) x major depressive disorder interaction (2df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	9q21.12		rs139747326-T	0.99	4E-9				NR [NR] (imputed)	N
1136	chr9	72349103	72349104	rs139747326	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (processing speed) x major depressive disorder interaction (1df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	9q21.12		rs139747326-T	0.99	2E-8		0.47	[0.14-0.8] unit decrease	NR [NR] (imputed)	N
1136	chr9	72349103	72349104	rs139747326	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (global cognition) x major depressive disorder interaction (2df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	9q21.12		rs139747326-T	0.99	5E-11				NR [NR] (imputed)	N
1136	chr9	72349103	72349104	rs139747326	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (global cognition) x major depressive disorder interaction (1df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	9q21.12		rs139747326-T	0.99	4E-10		2.08	[1.43-2.73] unit increase	NR [NR] (imputed)	N
1136	chr9	72349103	72349104	rs139747326	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (executive function) x major depressive disorder interaction (2df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	9q21.12		rs139747326-T	0.99	9E-10				NR [NR] (imputed)	N
1136	chr9	72349103	72349104	rs139747326	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (executive function) x major depressive disorder interaction (1df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	9q21.12		rs139747326-T	0.99	3E-8		1.93	[1.24-2.62] unit increase	NR [NR] (imputed)	N
1137	chr9	72401075	72401076	rs76544571	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 4 levels	252 European ancestry individuals	NA	9q21.12		rs76544571-A	NR	2E-6		1.8591	[1.1-2.61] unit increase	Illumina [NR] (imputed)	N
1137	chr9	72475191	72475192	rs565295967	32693751	Keene KL	2020-07-22	Stroke	Genome-Wide Association Study Meta-Analysis of Stroke in 22 000 Individuals of African Descent Identifies Novel Associations With Stroke.	Stroke	3,734 African ancestry cases, 18,317 African ancestry controls	NA	9q21.12	C9orf135	rs565295967-T	NR	2E-7		1.86	[1.65-2.09]	Affymetrix, Illumina [~ 16900000] (imputed)	N
1138	chr9	72483646	72483647	rs11792259	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Transverse temporal cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	9q21.12	C9orf135	rs11792259-?		4E-6				Illumina [4322238] (imputed)	N
1138	chr9	72488417	72488418	rs140830767	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Sensorimotor dexterity	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	9q21.12	C9orf135	rs140830767-A	NR	4E-8		1.1071088	[0.64-1.58] unit decrease	Illumina [> 6200000] (imputed)	N
1138	chr9	72537084	72537085	rs10780702	33594131	Donati G	2021-02-16	Sci Rep	Evidence for specificity of polygenic contributions to attainment in English, maths and science during adolescence.	Academic attainment (maths)	6,017 European ancestry adolescents	NA	9q21.12	NR	rs10780702-T	NR	8E-7		0.17	[0.11-0.23] unit decrease	Illumina [6319684] (imputed)	N
1138	chr9	72537084	72537085	rs10780702	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Precuneus cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	9q21.12	NR	rs10780702-?		4E-7				Illumina [4322238] (imputed)	N
1138	chr9	72539239	72539240	rs10780705	33594131	Donati G	2021-02-16	Sci Rep	Evidence for specificity of polygenic contributions to attainment in English, maths and science during adolescence.	Academic attainment (maths)	6,017 European ancestry adolescents	NA	9q21.12	NR	rs10780705-T	NR	6E-6		0.1	[0.061-0.139] unit increase	Illumina [6319684] (imputed)	N
1138	chr9	72546916	72546917	rs4744962	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	9q21.12	C9orf135, MAMDC2	rs4744962-T	0.1123	2E-10		0.136	[0.093-0.179] unit decrease	Affymetrix [~ 11900000] (imputed)	N
1138	chr9	72547630	72547631	rs11788737	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Postcentral gyrus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	9q21.12	NR	rs11788737-?		5E-6				Illumina [4322238] (imputed)	N
1138	chr9	72549747	72549748	rs7847934	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	9q21.12	C9orf135, MAMDC2	rs7847934-A	0.1044	1E-11		0.15	[0.11-0.19] unit decrease	Affymetrix [~ 11900000] (imputed)	N
1138	chr9	72568186	72568187	rs7025044	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs7025044-T	0.112569	3E-16		0.113353	[0.085-0.142] decrease	Affymetrix [11014269] (imputed)	N
1138	chr9	72605578	72605579	rs62572599	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Pars orbitalis volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	9q21.12	NR	rs62572599-?		5E-6				Illumina [4322238] (imputed)	N
1139	chr9	72714896	72714896	rs71505377	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs71505377-AAGAGAGAGAG	0.727111	1E-16		0.0816334	[0.061-0.102] increase	Affymetrix [11014269] (imputed)	N
1139	chr9	72723203	72723204	rs139498917	32716492	Simcoe MJ	2020-07-27	Hum Mol Genet	Genome-wide association study of corneal biomechanical properties identifies over 200 loci providing insight into the genetic aetiology of ocular diseases.	Corneal resistance factor	106,030 European ancestry individuals	9,029 European ancestry individuals	9q21.12	MAMDC2	rs139498917-G	0.997	2E-55		1.142	[0.99-1.29] unit decrease	Affymetrix [12000000] (imputed)	N
1140	chr9	72752665	72752666	rs75529319	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs75529319-C	0.986525	3E-10		0.247192	[0.17-0.32] decrease	Affymetrix [11014269] (imputed)	N
1140	chr9	72773001	72773002	rs55686336	30787463	Escala-Garcia M	2019-02-21	Br J Cancer	Genome-wide association study of germline variants and breast cancer-specific mortality.	Breast cancer specific mortality in estrogen receptor positive breast cancer	4,116 European ancestry cases, 60,055 European ancestry controls	NA	9q21.12	NR	rs55686336-?	NR	3E-6		1.5113994	[1.27-1.80]	Affymetrix, Illumina [~ 10400000] (imputed)	N
1141	chr9	72920723	72920724	rs66524845	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs66524845-A	0.928908	1E-10		0.113504	[0.079-0.148] decrease	Affymetrix [11014269] (imputed)	N
1141	chr9	72944401	72944402	rs4744593	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	9q21.12	NR	rs4744593-T	0.1	5E-6		0.89	[0.83-0.95]	Illumina [8468885] (imputed)	N
1141	chr9	72952444	72952445	rs538498277	27089180	Day FR	2016-04-18	Nat Genet	Physical and neurobehavioral determinants of reproductive onset and success.	Age at first sexual intercourse	59,357 British ancestry males, 66,310 British ancestry females	NA	9q21.12	SMC5	rs538498277-C	0.998495	7E-10		0.314394	[0.21-0.41] unit increase	Affymetrix [641018] (imputed)	N
1141	chr9	72983733	72983737	rs202106186	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (Multivariate)	1,390 European ancestry individuals	NA	9q21.12		rs202106186-?	NR	9E-6	(MLM)			Illumina [~ 9000000] (imputed)	N
1141	chr9	72998331	72998332	rs11142387	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	9q21.12	KLF9	rs11142387-A	NR	3E-8		0.016300114	[0.011-0.022] unit increase	Affymetrix [NR]	N
1141	chr9	72998331	72998332	rs11142387	24861553	Wen W	2014-05-26	Hum Mol Genet	Meta-analysis of genome-wide association studies in East Asian-ancestry populations identifies four new loci for body mass index.	Body mass index	82,438 East Asian ancestry individuals, 4,301 South East Asian ancestry individuals	Up to 47,352 East Asian ancestry individuals	9q21.12	KLF9	rs11142387-C	0.41	3E-8		0.0324	[0.021-0.044] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1141	chr9	72998331	72998332	rs11142387	22344221	Okada Y	2012-02-19	Nat Genet	Common variants at CDKAL1 and KLF9 are associated with body mass index in east Asian populations.	Body mass index (SNP x SNP interaction)	26,620 Japanese ancestry individuals	35,625 East Asian ancestry individuals	9q21.12	KLF9	rs11142387-C	0.46	1E-9		0.04	[0.018-0.062] unit increase	Illumina [2178018] (imputed)	N
1142	chr9	73017958	73017959	rs11142400	31993563	Ware EB	2019-11-22	Mayo Clin Proc Innov Qual Outcomes	Genome-wide Association Study of 24-Hour Urinary Excretion of Calcium, Magnesium, and Uric Acid.	Urinary calcium excretion	6,462 European ancestry individuals	NA	9q21.12	KLF9	rs11142400-A	0.34	8E-7		7.64	NR mg decrease	NR [NR] (imputed)	N
1142	chr9	73017958	73017959	rs11142400	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	9q21.12	KLF9	rs11142400-G	0.66906	8E-11		0.0128128	[0.0089-0.0167] unit decrease	NR [13737936] (imputed)	N
1142	chr9	73017958	73017959	rs11142400	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	9q21.12		rs11142400-?	NR	9E-11				NR [~ 8900000] (imputed)	N
1142	chr9	73017958	73017959	rs11142400	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	9q21.12		rs11142400-?	NR	4E-9		0.0136352	[0.0093-0.018] unit decrease	Affymetrix [20259828] (imputed)	N
1142	chr9	73028765	73028766	rs1056448	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	9q21.12	Intergenic	rs1056448-T	0.5563	1E-9		0.012	[0.0081-0.0159] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1142	chr9	73031064	73031065	rs10868825	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	9q21.12		rs10868825-A	NR	3E-14		0.015	[0.011-0.019] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1142	chr9	73032475	73032476	rs4434676	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA			rs4434676-A	0.4292	3E-10		0.0089	[0.0062-0.0116] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1142	chr9	73035491	73035492	rs13286210	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	9q21.12	Intergenic	rs13286210-T	0.4389	3E-12	(MTAG)	0.0126	[0.0091-0.0161] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1142	chr9	73036109	73036110	rs12552288	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	9q21.12	Intergenic	rs12552288-C	0.4358	1E-16	(MTAG)	0.0137	[0.01-0.017] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1142	chr9	73037962	73037963	rs12000252	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	9q21.12		rs12000252-G	0.549098	1E-17		0.01929056	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1142	chr9	73037962	73037963	rs12000252	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	9q21.12	NR	rs12000252-G	0.546625	7E-26		0.019714	[0.016-0.023] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1142	chr9	73043386	73043387	rs12685933	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or major depressive disorder x sex interaction (3df)	31,567 European ancestry schizophrenia cases,19,924 European ancestry  bipolar disorder cases, 15,970 European ancestry major depressive disorder cases, 93,025 European ancestry controls	NA	9q21.12	KLF9, TRPM3	rs12685933-C	NR	9E-6			[NR]	NR [NR] (imputed)	N
1142	chr9	73049095	73049095	rs34713552	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	9q21.12		rs34713552-TG	NR	1E-8		0.0184	[0.012-0.025] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
1142	chr9	73050238	73050239	rs11142425	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	9q21.12	Intergenic	rs11142425-T	0.4259	3E-13	(MTAG)	0.0098	[0.0073-0.0123] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1142	chr9	73055335	73055336	rs35012903	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	9q21.12		rs35012903-T	0.4247	6E-10	(conditional-joint)	0.0088	[0.0061-0.0115] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1142	chr9	73057288	73057290	rs140072408	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	9q21.12		rs140072408-T	0.431881	2E-32		0.026923848	[0.022-0.031] unit increase	Affymetrix [93095623] (imputed)	N
1142	chr9	73063253	73063254	rs6560135	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q21.12	NR	rs6560135-T	0.570606	1E-47				Affymetrix, Illumina [17210439] (imputed)	N
1142	chr9	73066135	73066136	rs11142444	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	9q21.12	intergenic	rs11142444-G	0.4363	7E-11		0.02392035	[0.017-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1142	chr9	73068751	73068752	rs12001208	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Myopia (age of diagnosis)	104,293 European ancestry individuals	NA	9q21.12	NR	rs12001208-T	0.6604	7E-11		0.0528	[0.037-0.069] unit increase	Illumina [~ 10600000] (imputed)	N
1142	chr9	73068786	73068787	rs12001221	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	9q21.12	NR	rs12001221-T	0.566078	9E-49		0.028743	[0.025-0.033] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
1142	chr9	73072945	73072946	rs200092657	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	9q21.12	intergenic	rs200092657-A	0.4126	8E-18		0.03171053	[0.024-0.039] unit increase	Affymetrix [~ 2500000] (imputed)	N
1142	chr9	73080366	73080367	rs7873409	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	9q21.12		rs7873409-T	0.4217	3E-10		0.09784638	[0.067-0.129] mmHg increase	Affymetrix, Illumina [242866] (imputed)	N
1142	chr9	73080366	73080367	rs7873409	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q21.12	NR	rs7873409-G	0.562036	7E-25				Affymetrix, Illumina [24588908] (imputed)	N
1142	chr9	73086695	73086696	rs28537805	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	9q21.12	Intergenic	rs28537805-A	0.569	2E-11		0.0154	[0.011-0.02] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1142	chr9	73089661	73089662	rs11142464	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	9q21.12		rs11142464-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1142	chr9	73094534	73094535	rs963265	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine with aura	5,118 European ancestry cases, 74,239 European ancestry controls	NA	9q21.12	intergenic	rs963265-?	0.6	1E-6		1.12	[1.08-1.18]	Affymetrix, Illumina [~ 2300000] (imputed)	N
1142	chr9	73103140	73103141	rs3901151	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q21.12	NR	rs3901151-A	0.41927	2E-10				Affymetrix, Illumina [24653286] (imputed)	N
1142	chr9	73109997	73109998	rs10122081	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	9q21.12	NR	rs10122081-T	0.356116	2E-10		0.012437	[0.0086-0.0163] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1142	chr9	73110139	73110139	rs5898146	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	9q21.12		rs5898146-CTATT	0.354655	5E-24		0.023878453	[0.019-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1142	chr9	73121297	73121298	rs7037072	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	9q21.12	NR	rs7037072-G	0.543777	6E-11		0.012295	[0.0086-0.016] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
1142	chr9	73124342	73124343	rs56184018	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	9q21.12	intergenic	rs56184018-T	0.3559	3E-16		0.03122256	[0.024-0.039] unit increase	Affymetrix [~ 2500000] (imputed)	N
1143	chr9	73139061	73139062	rs34574970	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Time-dependent creatinine clearance change response to tenofovir treatment in HIV infection (time and treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	9q21.12	KLF9, TRPM3	rs34574970-?		9E-6				Illumina [~ 5140000] (imputed)	N
1143	chr9	73157415	73157416	rs10780944	23449627	Cousminer DL	2013-02-27	Hum Mol Genet	Genome-wide association and longitudinal analyses reveal genetic loci linking pubertal height growth, pubertal timing and childhood adiposity.	Pubertal anthropometrics	7,161 European ancestry males, 6,879 European ancestry females	5,133 European ancestry males, 4,577 European ancestry females	9q21.12	TRPM3	rs10780944-G	0.19	8E-7	(Single Height-males)	0.09	[0.053-0.127] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1143	chr9	73186955	73186956	rs59300564	28203683	Heit JA	2017-02-16	Thromb Haemost	Identification of unique venous thromboembolism-susceptibility variants in African-Americans.	Venous thromboembolism adjusted for sickle cell variant rs77121243-T	393 African American cases, 4,941 African American controls.	NR	9q21.12	TRPM3	rs59300564-T	0.0876	3E-7		1.958	[1.516-2.528]	Affymetrix, Illumina [14074516] (imputed)	N
1143	chr9	73249032	73249033	rs188386326	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder	29,475 European ancestry cases, 63,482 European ancestry controls	NA	9q21.12	NR	rs188386326-G	0.0137242	8E-6		1.068	[1.04-1.1]	Affymetrix [7791636] (imputed)	N
1143	chr9	73267606	73267607	rs4745021	30099483	Hwangbo Y	2018-08-06	J Clin Endocrinol Metab	Genome-wide Association Study Reveals Distinct Genetic Susceptibility of Thyroid Nodules from Thyroid Cancer.	Thyroid nodules	811 Korean ancestry cases, 691 Korean ancestry controls	1,981 Korean ancestry cases, 3,100 Korean ancestry controls	9q21.12	TRPM3	rs4745021-T	0.23	2E-8		1.28	[1.18-1.40]	Affymetrix [3996558] (imputed)	N
1144	chr9	73384853	73384854	rs12338666	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Pancreatic cancer	768 White British ancestry cases, 264,559 White British ancestry controls	NA	9q21.12		rs12338666-?	NR	4E-6		1.53361	[1.35-1.72]	NR [663102]	N
1145	chr9	73438605	73438605	rs71507014	26691988	Fritsche LG	2015-12-21	Nat Genet	A large genome-wide association study of age-related macular degeneration highlights contributions of rare and common variants.	Advanced age-related macular degeneration	16,144 European ancestry cases, 17,832 European ancestry controls	473 Asian ancestry cases, 1,099 Asian ancestry controls, 52 African ancestry cases, 361 African ancestry cases, 254 other non-European ancestry cases, 694 other non-European ancestry controls	9q21.12	TRPM3	rs71507014-?	NR	3E-8	(EA)	1.1		Illumina [12023830] (imputed)	N
1145	chr9	73444039	73444040	rs6560155	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	9q21.12	Intergenic	rs6560155-T	0.7198	1E-8	(MTAG)	0.0083	[0.0054-0.0112] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1145	chr9	73480717	73480718	rs1415221	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	9q21.12	TRPM3	rs1415221-C	0.509804	4E-9	(-116 ms)	0.032729	[0.022-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
1145	chr9	73480717	73480718	rs1415221	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	9q21.12	TRPM3	rs1415221-C	0.509804	4E-9	(-112 ms)	0.0326063	[0.022-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
1145	chr9	73480717	73480718	rs1415221	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	9q21.12	TRPM3	rs1415221-C	0.509804	4E-8	(-124 ms)	0.0310373	[0.02-0.042] unit decrease	Affymetrix [10000000] (imputed)	N
1145	chr9	73480717	73480718	rs1415221	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	9q21.12	TRPM3	rs1415221-C	0.509804	3E-8	(-122 ms)	0.03125	[0.02-0.042] unit decrease	Affymetrix [10000000] (imputed)	N
1145	chr9	73480717	73480718	rs1415221	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	9q21.12	TRPM3	rs1415221-C	0.509804	2E-9	(-114 ms)	0.0331359	[0.022-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
1145	chr9	73480717	73480718	rs1415221	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	9q21.12	TRPM3	rs1415221-C	0.509804	2E-8	(-120 ms)	0.0315771	[0.021-0.043] unit decrease	Affymetrix [10000000] (imputed)	N
1145	chr9	73480717	73480718	rs1415221	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	9q21.12	TRPM3	rs1415221-C	0.509804	1E-8	(-118 ms)	0.0322297	[0.021-0.043] unit decrease	Affymetrix [10000000] (imputed)	N
1145	chr9	73480717	73480718	rs1415221	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	9q21.12	TRPM3	rs1415221-C	0.509804	1E-8	(-110 ms)	0.0315278	[0.021-0.043] unit decrease	Affymetrix [10000000] (imputed)	N
1145	chr9	73480717	73480718	rs1415221	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	9q21.12	TRPM3	rs1415221-C	0.509804	1E-8	(-108 ms)	0.0305523	[0.02-0.042] unit decrease	Affymetrix [10000000] (imputed)	N
1145	chr9	73480717	73480718	rs1415221	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	9q21.12	TRPM3	rs1415221-C	0.509804	1E-8	(-106 ms)	0.0303697	[0.019-0.041] unit decrease	Affymetrix [10000000] (imputed)	N
1145	chr9	73482646	73482647	rs6560168	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	9q21.12	TRPM3	rs6560168-T	0.45	2E-12		0.45	[0.33-0.57] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1145	chr9	73496966	73496967	rs17471974	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	9q21.12	TRPM3	rs17471974-G	0.1789	5E-11		0.5738	[0.4-0.75] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1145	chr9	73504991	73504992	rs1415218	33568662	Dashti HS	2021-02-10	Nat Commun	Genetic determinants of daytime napping and effects on cardiometabolic health.	Daytime nap	452,633 European ancestry individuals	541,333 European ancestry individuals	9q21.12	TRPM3	rs1415218-T		3E-10		0.0061	[0.0041-0.0081] unit increase	Affymetrix [13304133] (imputed)	N
1146	chr9	73534436	73534437	rs149031085	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	9q21.12	TRPM3	rs149031085-T	0.011	2E-6		0.1731	[0.1-0.24] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1146	chr9	73553244	73553245	rs150282530	30104761	Zhou W	2018-08-13	Nat Genet	Efficiently controlling for case-control imbalance and sample relatedness in large-scale genetic association studies.	Coronary artery disease	31,355 European ancestry cases, 377,103 European ancestry controls	NA	9q21.12	TRPM3	rs150282530-T	0.001	3E-8				Affymetrix [28000000] (imputed)	N
1146	chr9	73560824	73560825	rs7860557	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	9q21.12	NR	rs7860557-?	NR	4E-6		6.9802	[1.23-12.73] unit increase	Illumina [at least 560000] (imputed)	N
1146	chr9	73636236	73636237	rs962001	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	9q21.12	KLF9	rs962001-?	NR	9E-6	(SM 14:0)	0.17934978	[0.1-0.26] unit increase	Affymetrix [at least 2500000] (imputed)	N
1147	chr9	73737704	73737705	rs10780989	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Rubella	12,000 European ancestry cases, 71,597 European ancestry controls	NA	9q21.12	NR	rs10780989-?	NR	5E-6		0.0761	[0.043-0.109] unit decrease	Illumina [at least 560000] (imputed)	N
1147	chr9	73777776	73777777	rs7038966	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		9q21.12	TRPM3	rs7038966-C	0.588642	1E-11		0.00947635	[0.0067-0.0122] unit decrease	Affymetrix [12370749]	N
1147	chr9	73777776	73777777	rs7038966	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	9q21.12	NR	rs7038966-?	NR	7E-12				Affymetrix [~ 8270000] (imputed)	N
1147	chr9	73780911	73780912	rs10746862	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	9q21.12	NA	rs10746862-T	0.5811	3E-11		0.0114	[0.0081-0.0147] unit decrease	NR [~ 27400000] (imputed)	N
1147	chr9	73784263	73784264	rs4745062	20834067	Yashin AI	2010-09-01	Aging (Albany NY)	Joint influence of small-effect genetic variants on human longevity.	Longevity	1,173 individuals	NA	9q21.12	TRPM3	rs4745062-?	NR	1E-6	(less than or equal to)			NR [~ 550000]	N
1148	chr9	73798370	73798371	rs1329767	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	9q21.12		rs1329767-?	NR	2E-14				NR [~ 8900000] (imputed)	N
1148	chr9	73801126	73801127	rs117766200	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia	11,197 European ancestry low myopic cases, 21,416 European ancestry emmetropia controls	NA	9q21.12	NR	rs117766200-?	NR	9E-6		0.359318	[0.2-0.52] unit decrease	NR [13958389] (imputed)	N
1148	chr9	73804163	73804164	rs7870970	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	9q21.12		rs7870970-T	NR	3E-9		0.0112	[0.0075-0.0149] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1148	chr9	73837154	73837155	rs2134858	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	9q21.12	NA	rs2134858-T	0.5119	6E-12		0.0117	[0.0084-0.015] unit decrease	NR [~ 27400000] (imputed)	N
1148	chr9	73840917	73840918	rs2309891	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	9q21.12	NR	rs2309891-?	NR	3E-7	(AA)	0.3754	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1148	chr9	73869754	73869755	rs10868998	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 208)	19,670 European ancestry individuals	NA	9q21.12		rs10868998-?	NR	1E-11				NR [9705931] (imputed)	N
1148	chr9	73869754	73869755	rs10868998	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	9q21.12		rs10868998-?	NR	4E-12				NR [~ 8900000] (imputed)	N
1148	chr9	73881874	73881874	rs151258497	32581322	Kakuta Y	2020-06-24	Sci Rep	An Integrated Genomic and Transcriptomic Analysis Reveals Candidates of Susceptibility Genes for Crohn's Disease in Japanese Populations.	Crohn's disease	713 Japanese ancestry cases, 2,063 Japanese ancestry controls	NA	9q21.12	TRPM3	rs151258497-?	NR	5E-6		1.0638298	[1.03-1.09]	NR [7424691] (imputed)	N
1148	chr9	73915451	73915452	rs187116366	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	9q21.13	TRPM3	rs187116366-T	0.991	3E-6		0.268	NR unit increase	Illumina [NR] (imputed)	N
1149	chr9	73950954	73950955	rs2043144	25897834	Biernacka JM	2015-04-21	Transl Psychiatry	The International SSRI Pharmacogenomics Consortium (ISPC): a genome-wide association study of antidepressant treatment response.	Response to serotonin reuptake inhibitors in major depressive disorder	298 European ancestry cases, 567 Asian ancestry cases, 1529 European and other ancestry cases	NA	9q21.13	TRPM3	rs2043144-?	NR	4E-6	(Response)	2.63	[NR]	Illumina [~ 7000000] (imputed)	N
1150	chr9	74089001	74089002	rs11142841	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	9q21.13	TRPM3	rs11142841-?	NR	1E-7	(inositol)	1.7199197	[1.08-2.36] unit increase	Affymetrix [at least 2500000] (imputed)	N
1151	chr9	74245425	74245426	rs6560218	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	9q21.13	TRPM3, TMEM2	rs6560218-C	0.4817	1E-8		1.0226527		Affymetrix [11880941] (imputed)	N
1151	chr9	74257161	74257162	rs2871401	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	9q21.13		rs2871401-C	NR	4E-9		0.0147	[0.0098-0.0196] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
1151	chr9	74262611	74262612	rs1410986	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	9q21.13		rs1410986-?	NR	3E-11				NR [~ 8900000] (imputed)	N
1151	chr9	74262611	74262612	rs1410986	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	9q21.13	TMEM2	rs1410986-G	0.70484375	4E-7	(TMEM2, 8992_1_3)	0.13672362	[0.084-0.189] unit increase	Illumina [> 1000000] (imputed)	N
1151	chr9	74292015	74292016	rs1360141	27595289	Goyal RK	2016-09-05	Bone Marrow Transplant	Novel HLA-DP region susceptibility loci associated with severe acute GvHD.	Acute graft versus host disease in bone marrow transplantation (recipient effect)	291 European ancestry recipients with acute graft versus host disease, 288 European ancestry recipients without acute graft versus host disease	NA	9q21.13	Intergenic	rs1360141-?		7E-7				Affymetrix [905761]	N
1151	chr9	74299639	74299640	rs12237894	30954325	Kamboh MI	2019-03-11	Neurobiol Aging	Population-based genome-wide association study of cognitive decline in older adults free of dementia: identification of a novel locus for the attention domain.	Age-related cognitive decline (executive function) (slope of z-scores)	1,145 European ancestry individuals	NA	9q21.13	TMEM2	rs12237894-C	0.12	6E-6		0.28	unit increase	Illumina [5600000] (imputed)	N
1152	chr9	74379258	74379259	rs12379790	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	9q21.13	TMEM2	rs12379790-A	0.1519	5E-8		0.018021155	[0.012-0.024] unit decrease	Affymetrix [11515109] (imputed)	N
1152	chr9	74381199	74381200	rs10869060	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	9q21.13		rs10869060-G	0.43	8E-9		0.007	[0.005-0.009] unit decrease	NR [NR] (imputed)	N
1152	chr9	74387940	74387941	rs10735607	33483693	Clements CC	2021-01-22	Mol Psychiatry	Genome-wide association study of patients with a severe major depressive episode treated with electroconvulsive therapy.	Major depressive episode treated with electroconvulsive therapy	2,725 European ancestry cases, 3,290 European ancestry controls	NA	9q21.13	TMEM2	rs10735607-?	NR	6E-6		1.234	[1.14-1.33]	Illumina [NR] (imputed)	N
1154	chr9	74632266	74632267	rs560001710	31589552	Lind L	2019-10-07	Metab Syndr Relat Disord	Genome-Wide Association Study of the Metabolic Syndrome in UK Biobank.	Metabolic syndrome	291,107 European ancestry individuals	NA	9q21.13	MIR148A	rs56001710-A	0.417154	7E-9		0.0388139	[0.025-0.052] unit increase	Affymetrix [9463307] (imputed)	N
1154	chr9	74635601	74635602	rs11143067	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	9q21.13	NR	rs11143067-?	NR	2E-13				Affymetrix [NR]	N
1155	chr9	74828972	74828973	rs17494333	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in diabetes mellitus	153 Korean ancestry cases, 5,161 Korean ancestry controls	NA	9q21.13		rs17494333-G	0.1512	2E-6		1.937	[1.474-2.546]	Affymetrix [7975321] (imputed)	N
1155	chr9	74829482	74829483	rs11143173	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	9q21.13	NR	rs11143173-?	NR	8E-7		4.939	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1156	chr9	74842850	74842851	rs17579467	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Scarlet fever	6,812 European ancestry cases, 113,837 European ancestry controls	NA	9q21.13	NR	rs17579467-?	NR	6E-6		0.2091	[0.12-0.3] unit decrease	Illumina [at least 560000] (imputed)	N
1156	chr9	74887702	74887703	rs11143230	20877300	Perroud N	2010-09-28	Pharmacogenomics J	Genome-wide association study of increasing suicidal ideation during antidepressant treatment in the GENDEP project.	Suicidal ideation	706 European ancestry individuals	NA		GDA	rs11143230-C	0.35	8E-7	(Whole sample)	1.88	[NR]	Illumina [539199]	N
1156	chr9	74887702	74887703	rs11143230	20877300	Perroud N	2010-09-28	Pharmacogenomics J	Genome-wide association study of increasing suicidal ideation during antidepressant treatment in the GENDEP project.	Suicidal ideation	706 European ancestry individuals	NA		GDA	rs11143230-C	0.35	7E-6	(Escitalopram)	2.22	[NR]	Illumina [539199]	N
1156	chr9	74930374	74930376	rs368838820	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	9q21.13		rs368838820-C	NR	5E-9		0.0149	[0.01-0.02] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
1156	chr9	74931765	74931766	rs1079290	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	9q21.13	NR	rs1079290-A	NR	5E-10		0.0157	[0.011-0.021] unit increase	Affymetrix [9000000] (imputed)	N
1156	chr9	74946821	74946822	rs117330052	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Sensorimotor dexterity	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	9q21.13	ZFAND5	rs117330052-A	NR	5E-6		0.48321632	[0.23-0.74] unit decrease	Illumina [> 6200000] (imputed)	N
1157	chr9	75016020	75016021	rs17636410	28585551	Sigurdsson S	2017-06-06	Nat Commun	Sequence variants in ARHGAP15, COLQ and FAM155A associate with diverticular disease and diverticulitis.	Diverticulitis	2,764 Icelandic ancestry cases, 245,951 Icelandic ancestry controls (includes non-array genotyped, whole-genome imputed individuals)	NA	9q21.13	intergenic	rs17636410-A	0.251	7E-7		1.19	[1.11-1.28]	Illumina [32463443] (imputed)	N
1157	chr9	75020004	75020005	rs7341927	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	9q21.13	NR	rs7341927-?	NR	2E-14				Affymetrix [NR]	N
1157	chr9	75034873	75034874	rs13300927	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	9q21.13		rs13300927-?	NR	9E-9				NR [~ 8900000] (imputed)	N
1158	chr9	75195510	75195511	rs66520913	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	9q21.13		rs66520913-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1158	chr9	75206336	75206337	rs17095	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	9q21.13	NR	rs17095-C	0.476554	1E-11		0.020954	[0.015-0.027] unit increase	NR [19129689] (imputed)	N
1159	chr9	75318066	75318067	rs72733034	31123309	Rayner C	2019-05-23	Transl Psychiatry	A genome-wide association meta-analysis of prognostic outcomes following cognitive behavioural therapy in individuals with anxiety and depressive disorders.	Response to cognitive-behavioural therapy in anxiety disorder	972 European ancestry adult cases	NA	9q21.13	ALDH1A1, TMC1	rs72733034-A	0.11	4E-6		0.34	[0.2-0.48] unit increase	Illumina [at least 4710000] (imputed)	N
1159	chr9	75332794	75332795	rs1838488	33385400	Patrick MT	2020-12-29	J Invest Dermatol	Causal relationship and shared genetic loci between psoriasis and type 2 diabetes through trans-disease meta-analysis.	Psoriasis or type 2 diabetes (trans-disease meta-analysis)(opposite effect)	11,024 European ancestry psoriasis cases, 74,124 European ancestry diabetes cases, 840,342 European ancestry controls	NA	9q21.13	NR	rs1838488-C		4E-8		1.07		NR [8016731] (imputed)	N
1160	chr9	75407158	75407159	rs17058153	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9q21.13	NR	rs17058153-C	0.02091	2E-9	(LGALS1)	0.2586	NR unit increase	Illumina [1671387] (imputed)	N
1161	chr9	75513721	75513722	rs348480	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Longevity	up to 482,000 European ancestry individuals	NA	9q21.13	NR	rs348480-A	NR	7E-8		0.015	[0.0095-0.0205] unit increase	Illumina [~ 540852]	N
1161	chr9	75540503	75540504	rs8187929	31959922	Matoba N	2020-01-20	Nat Hum Behav	GWAS of 165,084 Japanese individuals identified nine loci associated with dietary habits.	Alcohol consumption (drinkers vs non-drinkers)	83,713 Japanese ancestry ever drinkers, 81,371 Japanese ancestry never drinkers	NA	9q21.13	ALDH1A1	rs8187929-?	NR	5E-14		0.031	[0.023-0.039] unit increase	Illumina [6108828] (imputed)	N
1162	chr9	75639862	75639863	rs76004885	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Sensorimotor dexterity	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	9q21.13	ALDH1A1	rs76004885-G	NR	9E-6		0.6526951	[0.33-0.98] unit decrease	Illumina [> 6200000] (imputed)	N
1162	chr9	75744156	75744157	rs4745216	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	9q21.13	ANXA1	rs4745216-A	0.03718593	5E-11	(EA, Annexin A1)	0.7729	[0.54-1] unit increase	Affymetrix [509946]	N
1163	chr9	75764564	75764565	rs3758354	20713499	Huang J	2010-08-16	Am J Psychiatry	Cross-disorder genomewide analysis of schizophrenia, bipolar disorder, and depression.	Schizophrenia, bipolar disorder and depression (combined)	402 European ancestry schizophrenia cases, 1,021 European ancestry bipolar I cases, 493 European ancestry bipolar II cases, 1,210 European ancestry MDD cases, 1,060 European ancestry controls	NA	9q21.13	ANXA1	rs3758354-C	0.03	3E-6				Affymetrix, Perlegen [1574154] (imputed)	N
1163	chr9	75824431	75824432	rs10781130	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	9q21.13	NR	rs10781130-?	NR	2E-11	(cerebellar vermal lobules VI VII)			NR [9227495] (imputed)	N
1163	chr9	75872142	75872143	rs13291234	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9q21.13		rs13291234-?	NR	9E-9				NR [~ 8900000] (imputed)	N
1164	chr9	75913957	75913958	rs62539060	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	9q21.13		rs62539060-?	NR	1E-14				NR [~ 8900000] (imputed)	N
1165	chr9	76051366	76051367	rs143838614	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	9q21.13	Intergenic	rs143838614-T	0.987	3E-6	(AA)	0.071	unit increase	Illumina [NR] (imputed)	N
1165	chr9	76113817	76113818	rs115855507	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	9q21.13	Intergenic	rs115855507-A	0.945	4E-6	(AA)	0.033	unit increase	Illumina [NR] (imputed)	N
1165	chr9	76115817	76115818	rs383182	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in obese individuals	4,613 European ancestry male individuals, 4,690 European ancestry female individuals, 142 European ancestry individuals	NA	9q21.13	ANXA1	rs383182-C	0.04	4E-6	(women)	0.237	[0.14-0.34] kg/m2 increase	Affymetrix, Illumina [at least 188473] (imputed)	N
1165	chr9	76127517	76127518	rs116107739	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	9q21.13	Intergenic	rs116107739-A	0.945	4E-6	(AA)	0.034	unit increase	Illumina [NR] (imputed)	N
1165	chr9	76127529	76127530	rs114785263	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	9q21.13	Intergenic	rs114785263-T	0.945	4E-6	(AA)	0.034	unit increase	Illumina [NR] (imputed)	N
1165	chr9	76128721	76128722	rs59775286	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	9q21.13	Intergenic	rs59775286-T	0.945	4E-6	(AA)	0.034	unit increase	Illumina [NR] (imputed)	N
1165	chr9	76128755	76128756	rs58710288	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	9q21.13	Intergenic	rs58710288-C	0.945	4E-6	(AA)	0.034	unit increase	Illumina [NR] (imputed)	N
1165	chr9	76139046	76139047	rs115081025	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	9q21.13	Intergenic	rs115081025-A	0.945	4E-6	(AA)	0.033	unit increase	Illumina [NR] (imputed)	N
1165	chr9	76144317	76144318	rs67286026	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	9q21.13		rs67286026-T	0.2	4E-11		6.61	z score increase	Affymetrix [9061022] (imputed)	N
1165	chr9	76144317	76144318	rs67286026	32963231	Hofer E	2020-09-22	Nat Commun	Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.	Cortical volume	22,824 European and African American ancestry individuals	NA	9q21.13	ANXA1	rs67286026-?		5E-11	(Postcentral)			Affymetrix, Illumina [NR] (imputed)	N
1165	chr9	76144317	76144318	rs67286026	32963231	Hofer E	2020-09-22	Nat Commun	Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.	Cortical surface area	18,617 European and African American ancestry individuals	22,363 European ancestry individuals	9q21.13	ANXA1	rs67286026-?		8E-16	(Postcentral)			Affymetrix, Illumina [NR] (imputed)	N
1166	chr9	76155312	76155313	rs395937	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Unilateral cleft lip and palate	205 Asian ancestry cases, 315 European ancestry cases, 692 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	9q21.13	NR	rs395937-?	NR	3E-7		1.5	[1.42-1.58]	Illumina [539000] (imputed)	N
1166	chr9	76157129	76157130	rs11789773	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	9q21.13	NR	rs11789773-A	0.1897	3E-10				NR [9056863] (imputed)	N
1166	chr9	76157129	76157130	rs11789773	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	9q21.13	C3orf49, THOC7, ATXN7, PSMD6	rs11789773-?		4E-9				NR [7428630] (imputed)	N
1166	chr9	76157129	76157130	rs11789773	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	9q21.13	NR	rs11789773-?		3E-10				NR [7428630] (imputed)	N
1166	chr9	76157129	76157130	rs11789773	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	9q21.13	NR	rs11789773-A	0.1857	3E-13	(Postcentral)	21.35172	[15.62-27.09] unit decrease	Affymetrix, Illumina [NR]	N
1166	chr9	76157129	76157130	rs11789773	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	9q21.13	NR	rs11789773-?	NR	4E-11	(right postcentral)			NR [9227495] (imputed)	N
1166	chr9	76157129	76157130	rs11789773	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	9q21.13	NR	rs11789773-?	NR	1E-9	(left postcentral)			NR [9227495] (imputed)	N
1166	chr9	76157699	76157700	rs12555078	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	9q21.13	LOC138972	rs12555078-A	0.098	2E-6	(RANTES )	0.03	[NR] pg/mL increase	Illumina [899892]	N
1166	chr9	76158681	76158682	rs11143609	20041166	Fellay J	2009-12-24	PLoS Genet	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	9q21.13	intergenic	rs11143609-?	NR	7E-6	(progression)			Illumina [NR]	N
1166	chr9	76177178	76177179	rs184991195	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	9q21.13	Intergenic	rs184991195-T	0.988	6E-7	(AA)	0.08	unit increase	Illumina [NR] (imputed)	N
1166	chr9	76186053	76186054	rs149727148	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	9q21.13	Intergenic	rs149727148-C	0.984	3E-6	(AA)	0.075	unit increase	Illumina [NR] (imputed)	N
1166	chr9	76188873	76188874	rs2252548	34130359	Curtis SW	2021-06-15	Genet Epidemiol	FAT4 identified as a potential modifier of orofacial cleft laterality.	Right unilateral cleft lip and palate	59 Asian ancestry cases, 94 European ancestry cases, 263 Hispanic cases, 1,626 controls	NA	9q21.13	NR	rs2252548-?		3E-6		1.59	[1.31-1.93]	Illumina [539473] (imputed)	N
1166	chr9	76193769	76193770	rs13284943	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	9q21.13		rs13284943-T	0.2	5E-9		5.83	z score increase	Affymetrix [9061022] (imputed)	N
1166	chr9	76193769	76193770	rs13284943	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	9q21.13	NR	rs13284943-T	0.1868	2E-9				NR [9056863] (imputed)	N
1166	chr9	76216706	76216707	rs13285621	28468790	Agopian AJ	2017-06-01	Circ Cardiovasc Genet	Genome-Wide Association Studies and Meta-Analyses for Congenital Heart Defects.	Congenital heart disease (inherited effect)	1,119 European ancestry trios, 406 European ancestry cases, 2,976 European ancestry controls, 415 non-European ancestry trios	NA	9q21.13	intergenic	rs13285621-?	NR	8E-6		1.277448	[1.147618-1.421966]	Illumina [at least 4756772] (imputed)	N
1166	chr9	76226737	76226738	rs156765	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Hepatitis B	1,425 European ancestry cases, 218,180 European ancestry controls	NA	9q21.13	NR	rs156765-?	NR	6E-6		0.3815	[0.21-0.56] unit increase	Illumina [at least 560000] (imputed)	N
1167	chr9	76351181	76351182	rs750968	32690583	Cheng B	2020-07-20	G3 (Bethesda)	Genome-Wide Association Analysis Identified ANXA1 Associated with Shoulder Impingement Syndrome in UK Biobank Samples.	Shoulder impingement syndrome	7,252 European ancestry individuals	NA	9q21.13		rs750968-G	NR	5E-8		0.83333	[0.77-0.90] unit increase	Affymetrix [825927] (imputed)	N
1167	chr9	76360328	76360329	rs78086295	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9q21.13	NR	rs78086295-A	0.01916	6E-12	(TNC)	0.06241	NR unit increase	Illumina [1671387] (imputed)	N
1167	chr9	76360328	76360329	rs78086295	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9q21.13	NR	rs78086295-A	0.01916	4E-9	(KRT18)	2.439	NR unit increase	Illumina [1671387] (imputed)	N
1167	chr9	76360328	76360329	rs78086295	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9q21.13	NR	rs78086295-A	0.01916	2E-9	(KRT8)	4.185	NR unit increase	Illumina [1671387] (imputed)	N
1167	chr9	76375543	76375544	rs6560353	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (age at voice breaking MTAG)	205,354 European ancestry individuals	NA	9q21.13		rs6560353-G	NR	1E-13		0.032881793	[0.024-0.042] years increase	NR [7400000] (imputed)	N
1168	chr9	76469912	76469913	rs7047189	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	9q21.13	ANXA1	rs7047189-?	NR	6E-6	(phenylalanine)	0.18626855	[0.11-0.27] unit increase	Affymetrix [at least 2500000] (imputed)	N
1168	chr9	76484267	76484268	rs77598468	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	9q21.13		rs77598468-A	0.03428	1E-12		0.042	[0.03-0.054] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
1168	chr9	76492426	76492427	rs17059531	21844884	Wheeler HE	2011-08-16	Pharmacogenomics J	Genome-wide meta-analysis identifies variants associated with platinating agent susceptibility across populations.	Response to platinum-based chemotherapy (carboplatin)	176 Sub-Saharan African ancestry lymphoblastoid cell lines, 83 African ancestry lymphoblastoid cell lines, 175 East Asian ancestry lymphoblastoid cell lines, 174 European ancestry lymphoblastoid cell lines	NA	9q21.13	intergenic	rs17059531-?		6E-6				NR [~ 3000000] (imputed)	N
1168	chr9	76520277	76520278	rs62544286	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	9q21.13	Intergenic	rs62544286-T	0.9202	4E-10		0.0224	[0.015-0.029] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1168	chr9	76523739	76523740	rs10114066	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	9q21.13	Intergenic	rs10114066-A	0.8735	2E-9	(MTAG)	0.0149	[0.01-0.0198] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1169	chr9	76563442	76563443	rs77656110	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9q21.13	NR	rs77656110-C	0.01742	6E-9	(ABCB6)	0.03812	NR unit increase	Illumina [1671387] (imputed)	N
1169	chr9	76563442	76563443	rs77656110	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9q21.13	NR	rs77656110-C	0.01742	5E-9	(CLTCL1)	0.1845	NR unit increase	Illumina [1671387] (imputed)	N
1169	chr9	76563442	76563443	rs77656110	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9q21.13	NR	rs77656110-C	0.01742	3E-9	(FLNB)	0.7604	NR unit increase	Illumina [1671387] (imputed)	N
1169	chr9	76563442	76563443	rs77656110	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9q21.13	NR	rs77656110-C	0.01742	3E-10	(KRT18)	2.715	NR unit increase	Illumina [1671387] (imputed)	N
1169	chr9	76563442	76563443	rs77656110	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9q21.13	NR	rs77656110-C	0.01742	2E-8	(TNC)	0.05403	NR unit increase	Illumina [1671387] (imputed)	N
1169	chr9	76563442	76563443	rs77656110	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9q21.13	NR	rs77656110-C	0.01742	2E-8	(CLTC)	0.5168	NR unit increase	Illumina [1671387] (imputed)	N
1169	chr9	76563442	76563443	rs77656110	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9q21.13	NR	rs77656110-C	0.01742	1E-10	(KRT8)	4.659	NR unit increase	Illumina [1671387] (imputed)	N
1169	chr9	76587351	76587352	rs1352809	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	9q21.13	Intergenic	rs1352809-T	0.1313	2E-11	(MTAG)	0.0177	[0.013-0.023] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1169	chr9	76588265	76588266	rs74821598	32690583	Cheng B	2020-07-20	G3 (Bethesda)	Genome-Wide Association Analysis Identified ANXA1 Associated with Shoulder Impingement Syndrome in UK Biobank Samples.	Shoulder impingement syndrome	7,252 European ancestry individuals	NA	9q21.13		rs74821598-T	NR	8E-6		1.5685	[1.37-1.77] unit increase	Affymetrix [825927] (imputed)	N
1169	chr9	76617719	76617720	rs10781182	26691988	Fritsche LG	2015-12-21	Nat Genet	A large genome-wide association study of age-related macular degeneration highlights contributions of rare and common variants.	Advanced age-related macular degeneration	16,144 European ancestry cases, 17,832 European ancestry controls	473 Asian ancestry cases, 1,099 Asian ancestry controls, 52 African ancestry cases, 361 African ancestry cases, 254 other non-European ancestry cases, 694 other non-European ancestry controls	9q21.13	MIR6130, RORB	rs10781182-?	NR	3E-9	(EA)	1.11		Illumina [12023830] (imputed)	N
1169	chr9	76639439	76639440	rs3000664	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	9q21.13	RP11-401G5.1	rs3000664-T	0.343	2E-6		0.0342	[0.02-0.048] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1169	chr9	76655552	76655553	rs181072684	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Faecalicatena sp002397985 abundance in stool	5,959 Finnish ancestry individuals	NA	9q21.13		rs181072684-A	0.0257583	6E-9		0.104869	[0.07-0.14] unit decrease	Illumina [7980478] (imputed)	N
1169	chr9	76669245	76669246	rs62550819	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	9q21.13		rs62550819-?	NR	6E-12				NR [~ 8900000] (imputed)	N
1170	chr9	76679776	76679777	rs62553781	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	9q21.13	ANXA1, RORB	rs62553781-C	0.9671	1E-12		1.0713291		Affymetrix [11880941] (imputed)	N
1170	chr9	76696620	76696621	rs13302616	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9q21.13		rs13302616-?	NR	9E-11				NR [~ 8900000] (imputed)	N
1170	chr9	76710283	76710284	rs7020553	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	9q21.13	LOC138971, LOC100130911	rs7020553-A	0.345	4E-6		2.18	[1.55-3.05]	Illumina [1556551]	N
1170	chr9	76729702	76729703	rs72742394	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	9q21.13		rs72742394-T	0.9017	7E-9		0.021	[0.013-0.029] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
1170	chr9	76733680	76733681	rs10119625	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Smoking x traumatic event in childhood (sexually molested) interaction	127,766 European ancestry individuals	NA	9q21.13		rs10119625-?	NR	2E-9		0.8523	[0.57-1.13] unit increase	Affymetrix [NR] (imputed)	N
1170	chr9	76755615	76755616	rs10781189	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	9q21.13	TRPM6	rs10781189-?	NR	2E-6	(3-phosphoglyceric acid)	0.19764686	[0.12-0.28] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1171	chr9	76839018	76839019	rs11143858	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	9q21.13	Intergenic	rs11143858-A	0.1862	4E-9		0.0172	[0.012-0.023] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1171	chr9	76841027	76841028	rs76083613	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Supramarginal gyrus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	9q21.13	LOC101927329	rs76083613-?		3E-6				Illumina [4322238] (imputed)	N
1171	chr9	76866723	76866724	rs72727137	32690583	Cheng B	2020-07-20	G3 (Bethesda)	Genome-Wide Association Analysis Identified ANXA1 Associated with Shoulder Impingement Syndrome in UK Biobank Samples.	Shoulder impingement syndrome	7,252 European ancestry individuals	NA	9q21.13		rs72727137-G	NR	2E-6		1.48045	[1.32-1.64] unit increase	Affymetrix [825927] (imputed)	N
1171	chr9	76891411	76891412	rs2604271	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	9q21.13	Intergenic	rs2604271-T	0.8202	2E-9	(MTAG)	0.0102	[0.0069-0.0135] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1171	chr9	76891411	76891412	rs2604271	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	9q21.13	RP11-171A24.2	rs2604271-?	NR	2E-10		0.010993	[0.0076-0.0144] unit increase	Affymetrix [805426] (imputed)	N
1171	chr9	76891411	76891412	rs2604271	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	6-month creatinine clearance change response to tenofovir treatment in HIV infection (treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	9q21.13	NR	rs2604271-?		3E-6	(Hispanic)			Illumina [~ 5140000] (imputed)	N
1171	chr9	76899035	76899036	rs2604263	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	9q21.13	Intergenic	rs2604263-A	0.7388	4E-10	(MTAG)	0.0118	[0.0081-0.0155] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1171	chr9	76904586	76904587	rs2604264	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	9q21.13		rs2604264-?	NR	1E-18				NR [~ 8900000] (imputed)	N
1171	chr9	76909385	76909386	rs2604268	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Reaction time	330,024 British ancestry individuals	NA	9q21.13		rs2604268-?	NR	1E-11				NR [7857346] (imputed)	N
1171	chr9	76909385	76909386	rs2604268	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	9q21.13	RP11-171A24.2	rs2604268-?	NR	9E-12		0.011798	[0.0084-0.0152] unit increase	Affymetrix [805426] (imputed)	N
1171	chr9	76910137	76910137	rs61658193	30898391	Lawrenson K	2019-03-19	Gynecol Oncol	Genome-wide association studies identify susceptibility loci for epithelial ovarian cancer in east Asian women.	Epithelial ovarian cancer	3,238 East Asian ancestry cases, 4,083 East Asian ancestry controls	NA	9q21.13		rs61658193-?	NR	9E-6	(serous)	1.3		Illumina [11595112] (imputed)	N
1171	chr9	76917839	76917840	rs10746953	26227905	Hu Y	2015-07-31	Mol Neurobiol	A Pooling Genome-Wide Association Study Combining a Pathway Analysis for Typical Sporadic Parkinson's Disease in the Han Population of Chinese Mainland.	Parkinson's disease	250 Han Chinese ancestry cases, 250 Han Chinese ancestry controls	NA	9q21.13	ANXA1, LOC100130911	rs10746953-?	NR	1E-6		2.62	[1.91-3.60]	Illumina [862198]	N
1172	chr9	76979602	76979602	rs140297755	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	9q21.13	intergenic	rs140297755-CCAA	0.3269	2E-11		0.02596015	[0.018-0.034] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1172	chr9	76979602	76979602	rs140297755	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	9q21.13	intergenic	rs140297755-CCAA	0.3269	6E-10		0.02410071	[0.016-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1172	chr9	76984552	76984553	rs9411103	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	9q21.13	RP11-171A24.2	rs9411103-G	0.3313	4E-10		0.0240727	[0.017-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1172	chr9	77060522	77060523	rs17292733	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	9q21.13	NR	rs17292733-A	0.270145	3E-12		0.017583452	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1172	chr9	77060522	77060523	rs17292733	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	9q21.13		rs17292733-A	0.270087	8E-15		0.019550392	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1172	chr9	77064720	77064721	rs62552898	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	9q21.13	NR	rs62552898-C	0.285292	1E-14		0.019233044	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1172	chr9	77064720	77064721	rs62552898	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	9q21.13		rs62552898-C	0.285241	7E-17		0.020636944	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1173	chr9	77074096	77074097	rs77123275	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Tea consumption	336,898 European ancestry individuals	39,924 European ancestry individuals	9q21.13	MIR6130	rs77123275-T	0.0517	4E-7		0.0178	[0.011-0.025] unit increase	Affymetrix [~ 7740000] (imputed)	N
1173	chr9	77074096	77074097	rs77123275	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Alcohol consumption (drinks per week)	414,343 European ancestry individuals	NA	9q21.13	RORB	rs77123275-T	0.0523	3E-8		0.027908385	[0.018-0.038] unit increase	Affymetrix [11514936] (imputed)	N
1173	chr9	77074096	77074097	rs77123275	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	9q21.13		rs77123275-?	NR	6E-14				NR [~ 8900000] (imputed)	N
1173	chr9	77074096	77074097	rs77123275	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	9q21.13	NR	rs77123275-T	0.0498526	3E-21		0.0676084	[0.054-0.082] unit increase	NR [19129689] (imputed)	N
1173	chr9	77118986	77118987	rs4090240	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	9q21.13	NR	rs4090240-C	0.7225	8E-9		1.0395011	[1.03-1.05]	Affymetrix, Illumina [NR] (imputed)	N
1173	chr9	77121683	77121684	rs7853479	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	9q21.13	RORB	rs7853479-?	NR	3E-13		0.5006	[0.36-0.64] unit increase	Affymetrix [11100000] (imputed)	N
1173	chr9	77136347	77136348	rs10746959	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	9q21.13	RORB	rs10746959-G	0.587728	2E-10		0.014556244	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
1173	chr9	77149836	77149837	rs7042950	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	9q21.13	RORB	rs7042950-?	NR	4E-7		0.12418	[0.076-0.172] unit increase	NR [13958389] (imputed)	N
1173	chr9	77149836	77149837	rs7042950	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Hyperopia	10,828 European ancestry hyperopia cases, 21,416 European ancestry emmetropia controls	NA	9q21.13	RORB	rs7042950-?	NR	8E-8		0.114277	[0.073-0.156] unit decrease	NR [13958389] (imputed)	N
1173	chr9	77149836	77149837	rs7042950	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	9q21.13	NR	rs7042950-A		7E-16		0.1	[0.08-0.12] unit increase	NR [NR]	N
1173	chr9	77149836	77149837	rs7042950	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	9q21.13	TMC1, ALDH1A1, RORB	rs7042950-?		6E-36				Affymetrix, Illumina [NR] (imputed)	N
1173	chr9	77149836	77149837	rs7042950	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	9q21.13	RORB	rs7042950-A	0.7323	1E-11		6.797	[NR] z score increase	Affymetrix, Illumina [~ 11000000] (imputed)	N
1173	chr9	77149836	77149837	rs7042950	23396134	Verhoeven VJ	2013-02-10	Nat Genet	Genome-wide meta-analyses of multiancestry cohorts identify multiple new susceptibility loci for refractive error and myopia.	Refractive error	37,382 European ancestry individuals, 3,995 Chinese ancestry individuals, 2,273 Malay ancestry individuals, 2,108 Indian ancestry individuals	NA	9q21.13	RORB	rs7042950-G	0.24	4E-8		0.096	[0.061-0.131] unit decrease	Affymetrix, Illumina [2500000] (imputed)	N
1173	chr9	77149836	77149837	rs7042950	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue/subcutaneous adipose tissue ratio	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	9q21.13	RORB	rs7042950-A	0.80	9E-6	(women)			Affymetrix, Illumina [2500000] (imputed)	N
1173	chr9	77160814	77160815	rs7037043	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	9q21.13		rs7037043-G	0.35	3E-9				NR [NR] (imputed)	N
1173	chr9	77160814	77160815	rs7037043	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	9q21.13		rs7037043-G	0.35	4E-8		0.009	% increase	NR [NR] (imputed)	N
1174	chr9	77222516	77222516	rs148262335	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	9q21.13	NR	rs148262335-TTA	0.33919699999999997	2E-17		0.0261569	[0.02-0.032] unit increase	Affymetrix [16577313] (imputed)	N
1174	chr9	77222516	77222516	rs148262335	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	9q21.13	NR	rs148262335-TTA	0.339155	1E-16		0.017513	[0.013-0.022] unit increase	Affymetrix [16583148] (imputed)	N
1174	chr9	77225602	77225603	rs912202	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	9q21.13	NR	rs912202-C	0.34332799999999997	3E-38		0.0401986	[0.034-0.046] unit increase	Affymetrix [16577424] (imputed)	N
1174	chr9	77237976	77237977	rs4745348	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	9q21.13	TRPM6	rs4745348-?	NR	8E-6	(TAG 48:0)	0.779275	[0.44-1.12] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1174	chr9	77237976	77237977	rs4745348	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	9q21.13	TRPM6	rs4745348-?	NR	2E-6	(TAG 46:0)	0.88183343	[0.52-1.24] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1174	chr9	77242678	77242679	rs55962158	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	9q21.13		rs55962158-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1174	chr9	77255109	77255110	rs1327827	31564439	Fang H	2019-09-26	Am J Hum Genet	Harmonizing Genetic Ancestry and Self-identified Race/Ethnicity in Genome-wide Association Studies.	Height	up to 248,507 non-Hispanic white individuals, up to 68,155 non-Hispanic black individuals, up to 25,847 Hispanic individuals, up to 3,054 Asian ancestry individuals	NA	9q21.13	NR	rs1327827-T	NR	7E-7				Affymetrix [723305]	N
1174	chr9	77255109	77255110	rs1327827	31564439	Fang H	2019-09-26	Am J Hum Genet	Harmonizing Genetic Ancestry and Self-identified Race/Ethnicity in Genome-wide Association Studies.	Height	up to 248,507 non-Hispanic white individuals, up to 68,155 non-Hispanic black individuals, up to 25,847 Hispanic individuals, up to 3,054 Asian ancestry individuals	NA	9q21.13	NR	rs1327827-T	NR	4E-8	(EA)	0.09	NR unit increase	Affymetrix [723305]	N
1174	chr9	77273909	77273910	rs35436838	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	9q21.13		rs35436838-?	NR	4E-11				NR [~ 8900000] (imputed)	N
1174	chr9	77273909	77273910	rs35436838	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9q21.13		rs35436838-?	NR	6E-9				NR [~ 8900000] (imputed)	N
1174	chr9	77276828	77276829	rs112870470	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Proteus abundance in stool	5,959 Finnish ancestry individuals	NA	9q21.13		rs112870470-A	0.0197659	1E-8		0.131679	[0.086-0.177] unit increase	Illumina [7980478] (imputed)	N
1174	chr9	77313195	77313196	rs12551356	30926877	Brcic L	2019-03-29	Sci Rep	Genome-wide association analysis suggests novel loci underlying thyroid antibodies in Hashimoto's thyroiditis.	Anti-thyroid peroxidase (TPOAb) levels in Hashimoto's thyroiditis	405 European ancestry cases	NA	9q21.13	TRPM6, RORB	rs12551356-G	0.904	1E-6		0.726	[0.44-1.02] unit decrease	Illumina [6007542] (imputed)	N
1174	chr9	77313195	77313196	rs12551356	30926877	Brcic L	2019-03-29	Sci Rep	Genome-wide association analysis suggests novel loci underlying thyroid antibodies in Hashimoto's thyroiditis.	Anti-thyroid peroxidase (TPOAb) and anti-thyroglobulin (TgAb) levels in Hashimoto's thyroiditis	405 European ancestry cases	NA	9q21.13	TRPM6, RORB	rs12551356-G	0.904	5E-6				Illumina [6007542] (imputed)	N
1175	chr9	77342814	77342815	rs514209	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	9q21.13	NR	rs514209-C	NR	5E-7		1.06	[NR]	Illumina [7158791] (imputed)	N
1175	chr9	77352797	77352798	rs944857	31219150	Ekenberg C	2019-06-13	J Infect Dis	Single nucleotide polymorphisms in HLA alleles are associated with HIV-1 viral load in demographically diverse, ART-naive participants from the START trial.	Pre-treatment viral load in HIV-1 infection	1,398 European ancestry individuals, 572 Black individuals, 418 Hispanic individuals, 13 Asian ancestry individuals, 39 individuals	NA	9q21.13	TRPM6	rs944857-G	0.268	4E-16		0.21	[0.16-0.27] unit decrease	Affymetrix [339439]	N
1175	chr9	77357042	77357043	rs875034	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	9q21.13		rs875034-G	0.44	4E-10		6.26	z score increase	Affymetrix [9061022] (imputed)	N
1175	chr9	77357042	77357043	rs875034	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	9q21.13	NR	rs875034-G	0.4367	2E-12				NR [9056863] (imputed)	N
1175	chr9	77363775	77363776	rs484396	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Prepulse inhibition of the startle response	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	9q21.13	TRPM6	rs484396-C	NR	6E-6		6.013478	[3.5-8.52] unit increase	Illumina [> 6200000] (imputed)	N
1175	chr9	77407814	77407815	rs144773862	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	9q21.13	NR	rs144773862-?	NR	6E-6	(Native Hawaiian)	1.1625	[NR] unit increase	Illumina [up to 11892802] (imputed)	N
1175	chr9	77422604	77422605	rs12380414	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	9q21.13	NR	rs12380414-T	NR	2E-11		0.0297	[0.021-0.038] unit decrease	Affymetrix [9000000] (imputed)	N
1175	chr9	77455458	77455459	rs113607577	26058915	Tin A	2015-05-29	BMC Genet	Genetic loci for serum magnesium among African-Americans and gene-environment interaction at MUC1 and TRPM6 in European-Americans: the Atherosclerosis Risk in Communities (ARIC) study.	Magnesium levels	2,737 African American individuals	942 African American individuals	9q21.13	TRPM6	rs113607577-G	0.9	5E-7		0.017	[NR] mmol/L decrease	Affymetrix [14825944] (imputed)	N
1176	chr9	77466209	77466210	rs62569730	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		TRPM6	rs62569730-?	NR	3E-10	(female)	1.72451	[NR] unit increase	Affymetrix [NR] (imputed)	N
1176	chr9	77466209	77466210	rs62569730	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		TRPM6	rs62569730-?	NR	1E-8		1.08496	[NR] unit increase	Affymetrix [NR] (imputed)	N
1176	chr9	77466699	77466700	rs148349564	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	9q21.13	NR	rs148349564-C	0.0804	8E-17		0.003382	[0.0026-0.0042] unit decrease	Affymetrix [NR] (imputed)	N
1176	chr9	77472065	77472066	rs12378991	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	9q21.13		rs12378991-A	NR	1E-16		0.0382	[0.029-0.047] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
1176	chr9	77482794	77482795	rs35878400	31370031	Dou KX	2019-08-01	Aging (Albany NY)	Genome-wide association study identifies CBFA2T3 affecting the rate of CSF A?42 decline in non-demented elders.	Annualised percent change of cerebrospinal fluid AB1-42 levels	321 European ancestry individuals	NA	9q21.13	TRPM6	rs35878400-T	0.273	2E-6		0.024	NR % increase	Illumina [1040042]	N
1176	chr9	77499795	77499796	rs11144134	20700443	Meyer TE	2010-08-05	PLoS Genet	Genome-wide association studies of serum magnesium, potassium, and sodium concentrations identify six Loci influencing serum magnesium levels.	Magnesium levels	15,366 European ancestry individuals	8,463 European ancestry individuals	9q21.13	TRPM6	rs11144134-T	0.92	8E-15		0.01	[0.009-0.013] mmol/L decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1176	chr9	77552194	77552195	rs1176815	31993563	Ware EB	2019-11-22	Mayo Clin Proc Innov Qual Outcomes	Genome-wide Association Study of 24-Hour Urinary Excretion of Calcium, Magnesium, and Uric Acid.	Urinary magnesium excretion	6,462 European ancestry individuals	NA	9q21.13	intergenic	rs1176815-A	0.43	2E-14		5.29	NR mg decrease	NR [NR] (imputed)	N
1176	chr9	77566145	77566146	rs3824347	29093028	Corre T	2017-11-01	J Am Soc Nephrol	Genome-Wide Meta-Analysis Unravels Interactions between Magnesium Homeostasis and Metabolic Phenotypes.	Urinary magnesium-to-creatinine ratio	up to 5,810 European ancestry individuals, up to 1,541 Val Borbera (founder/genetic isolate) individuals, up to 281 Carlantino (founder/genetic isolate) individuals,  up to 889 Korcula (founder/genetic isolate) individuals, up to 489 Split (founder/genetic isolate) individuals, up to 195 Vis (founder/genetic isolate) individuals	NA	9q21.13	C9orf40, C9orf41, TRPM6, NMRK1, OSTF1	rs3824347-G	0.41	4E-13		0.1103	[-0.18762-0.40822] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1177	chr9	77696676	77696677	rs11144217	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal cancer	978 Austrian ancestry colorectal cancer cases, 636 Austrian ancestry advanced colorectal adenoma cases, 4,294 European ancestry controls	NA	9q21.13	Intergenic	rs11144217-?		5E-6		1.276	[NR]	Affymetrix [492217] (imputed)	N
1177	chr9	77723160	77723161	rs12376344	29703947	Jawinski P	2018-04-27	Mol Psychiatry	Human brain arousal in the resting state: a genome-wide association study.	Resting-state electroencephalogram vigilance	1,877 European ancestry individuals	NA	9q21.13	OSTF1	rs12376344-T	0.769	7E-6	(Slope index)	0.1487	[0.084-0.213] unit decrease	Affymetrix [8042262] (imputed)	N
1178	chr9	77743186	77743187	rs9776186	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	9q21.13	NR	rs9776186-?	NR	1E-25				Affymetrix [NR]	N
1178	chr9	77768121	77768122	rs773020	31518406	Abdellaoui A	2019-09-13	Hum Mol Genet	Phenome-wide investigation of health outcomes associated with genetic predisposition to loneliness.	Loneliness	511,280 European ancestry individuals	NA	9q21.13	intergenic	rs773020-?	NR	1E-9		0.03	[0.02-0.04] unit decrease	Affymetrix, Illumina [up to 14113458] (imputed)	N
1178	chr9	77768121	77768122	rs773020	29970889	Day FR	2018-07-03	Nat Commun	Elucidating the genetic basis of social interaction and isolation.	Loneliness (MTAG)	487,647 European ancestry individuals	NA	9q21.13	TRPM6, C9orf40, C9orf41, NMRK1, OSTF1	rs773020-G	0.100011	2E-9		0.020598795	[0.014-0.027] unit decrease	NR [NR] (imputed)	N
1178	chr9	77768121	77768122	rs773020	29970889	Day FR	2018-07-03	Nat Commun	Elucidating the genetic basis of social interaction and isolation.	Loneliness	80,134 European ancestry cases, 364,890 European ancestry controls	NA	9q21.13	TRPM6, C9orf40, C9orf41, NMRK1, OSTF1	rs773020-G	0.1	5E-9		0.0079	[0.0054-0.0104] unit decrease	NR [NR] (imputed)	N
1178	chr9	77808518	77808519	rs17060946	25524916	Palmer ND	2014-12-18	Diabetes	Genetic Variants Associated With Quantitative Glucose Homeostasis Traits Translate to Type 2 Diabetes in Mexican Americans: The GUARDIAN (Genetics Underlying Diabetes in Hispanics) Consortium.	Glucose homeostasis traits	up to 4,176 Mexican American individuals	NA	9q21.13	OSTF1, PCSK5	rs17060946-?		3E-6	(M)	37.86	[21.59-54.13] unit increase	Illumina [693128]	N
1178	chr9	77830155	77830156	rs72734943	30818990	Yu D	2019-03-01	Am J Psychiatry	Interrogating the Genetic Determinants of Tourette's Syndrome and Other Tic Disorders Through Genome-Wide Association Studies.	Tourette syndrome	4,271 European ancestry cases, 548 European ancestry cases from 207 families, 9,488 European ancestry controls	706 Icelandic ancestry cases, 6,068 Icelandic ancestry controls	9q21.13	NR	rs72734943-A	0.014	4E-6		1.9006578		Illumina [8265319] (imputed)	N
1178	chr9	77832574	77832575	rs1332366	25085501	Bunyavanich S	2014-08-02	BMC Med Genomics	Integrated genome-wide association, coexpression network, and expression single nucleotide polymorphism analysis identifies novel pathway in allergic rhinitis.	Allergic rhinitis	872 European ancestry cases, 1,193 Latino cases, 647 African American/Afro-Caribbean cases, 1,162 European ancestry controls, 1,133 Latino controls, 626 African American/Afro-Caribbean controls	NA	9q21.13	OSTF1	rs1332366-?	NR	1E-6	(AA)	2.0	[1.28-4.55]	Affymetrix, Illumina [NR] (imputed)	N
1180	chr9	78006145	78006146	rs560653627	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	9q21.13	RP11-323A7.1	rs560653627-A	0.0051	5E-6		0.2503	[0.14-0.36] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1180	chr9	78028345	78028346	rs489332	23212062	Fanous AH	2012-12-01	Am J Psychiatry	Genome-wide association study of clinical dimensions of schizophrenia: polygenic effect on disorganized symptoms.	Schizophrenia	2,454 European ancestry cases	NA	9q21.13	intergenic	rs489332-?	NR	6E-6	(Mood symptoms)	0.1097	[NR] unit decrease	Affymetrix [696491]	N
1180	chr9	78042926	78042927	rs473299	30247649	Gonzalez-Serna D	2018-09-21	Rheumatology (Oxford)	Analysis of the genetic component of systemic sclerosis in Iranian and Turkish populations through a genome-wide association study.	Systemic sclerosis	764 Middle Eastern ancestry cases, 1,343 Middle Eastern ancestry controls	NA	9q21.13	OSTF1, PCSK5	rs473299-A	NR	9E-6		1.42	[1.21-1.65]	Illumina [5698748] (imputed)	N
1181	chr9	78138858	78138859	rs111568486	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Alcohol consumption x experiences in childhood (felt loved by family member) interaction	41,648 European ancestry individuals	NA	9q21.13		rs111568486-?	NR	4E-8		1.8265	[1.18-2.48] unit decrease	Affymetrix [NR] (imputed)	N
1181	chr9	78138891	78138892	rs116169065	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	9q21.13	MIR548H3	rs116169065-G	0.84917	6E-10		0.0159896	[0.011-0.021] unit increase	NR [13737936] (imputed)	N
1181	chr9	78186154	78186155	rs7862078	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	9q21.13	NR	rs7862078-C	NR	2E-9		0.0149	[0.01-0.0198] unit increase	Affymetrix [9000000] (imputed)	N
1181	chr9	78213767	78213768	rs998974	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	9q21.13		rs998974-C	NR	1E-8		0.0127	[0.0084-0.017] unit increase	Affymetrix, Illumina [20521447] (imputed)	N
1181	chr9	78215585	78215586	rs10114227	31447353	Maciukiewicz M	2019-08-22	Schizophr Res	Genome-wide association study on antipsychotic-induced weight gain in Europeans and African-Americans.	Antipsychotic drug-induced weight gain in schizophrenia	144 European ancestry individuals, 57 African American individuals	NA	9q21.13	MIR548H3	rs10114227-?	NR	3E-6		4.642	z-score decrease	Illumina [1819374] (imputed)	N
1181	chr9	78223128	78223129	rs1854330	29036319	Qi H	2017-09-26	Hum Mol Genet	Discovery of susceptibility loci associated with tuberculosis in Han Chinese.	Tuberculosis	972 Chinese ancestry cases, 1,316 Gambian ancestry cases, 1,537 Chinese ancestry controls, 1,382 Gambian ancestry controls	NA	9q21.13	NR	rs1854330-?	NR	9E-6				Illumina [7333833] (imputed)	N
1181	chr9	78229877	78229878	rs751303	29036319	Qi H	2017-09-26	Hum Mol Genet	Discovery of susceptibility loci associated with tuberculosis in Han Chinese.	Tuberculosis	972 Chinese ancestry cases, 1,316 Gambian ancestry cases, 1,537 Chinese ancestry controls, 1,382 Gambian ancestry controls	NA	9q21.13	NR	rs751303-?	NR	4E-6				Illumina [7333833] (imputed)	N
1181	chr9	78231454	78231455	rs1332521	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip and palate	121 Asian ancestry cases, 159 European ancestry cases, 285 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	9q21.13	NR	rs1332521-?	NR	7E-6		0.62	[0.58-0.67]	Illumina [539000] (imputed)	N
1181	chr9	78234844	78234845	rs10869606	29036319	Qi H	2017-09-26	Hum Mol Genet	Discovery of susceptibility loci associated with tuberculosis in Han Chinese.	Tuberculosis	972 Chinese ancestry cases, 1,316 Gambian ancestry cases, 1,537 Chinese ancestry controls, 1,382 Gambian ancestry controls	NA	9q21.13	NR	rs10869606-?	NR	7E-6				Illumina [7333833] (imputed)	N
1181	chr9	78235701	78235702	rs11525994	29036319	Qi H	2017-09-26	Hum Mol Genet	Discovery of susceptibility loci associated with tuberculosis in Han Chinese.	Tuberculosis	972 Chinese ancestry cases, 1,316 Gambian ancestry cases, 1,537 Chinese ancestry controls, 1,382 Gambian ancestry controls	NA	9q21.13	NR	rs11525994-?	NR	5E-6				Illumina [7333833] (imputed)	N
1182	chr9	78254470	78254471	rs11144542	30145303	Kimbrel NA	2018-07-17	Psychiatry Res	A genome-wide association study of suicide attempts and suicidal ideation in U.S. military veterans.	Suicide attempts	52 European ancestry cases, 70 cases, 680 European ancestry controls, 767 controls	NA	9q21.13	Intergenic	rs11144542-A	NR	5E-6		3.0		Illumina [2711511] (imputed)	N
1182	chr9	78257878	78257879	rs4745426	30145303	Kimbrel NA	2018-07-17	Psychiatry Res	A genome-wide association study of suicide attempts and suicidal ideation in U.S. military veterans.	Suicide attempts	52 European ancestry cases, 70 cases, 680 European ancestry controls, 767 controls	NA	9q21.13	Intergenic	rs4745426-G	NR	5E-6		3.01		Illumina [2711511] (imputed)	N
1182	chr9	78261547	78261548	rs11144550	26265699	Karol SE	2015-08-11	Blood	Genetics of glucocorticoid-associated osteonecrosis in children with acute lymphoblastic leukemia.	Glucocorticoid-induced osteonecrosis	274 European ancestry osteonecrosis cases, 25 Black osteonecrosis cases, 68 Hispanic osteonecrosis cases, 6 Asian ancestry osteonecrosis cases, 27 other ancestry osteonecrosis cases,  1,477 European ancestry treated controls, 223 Black treated controls, 572 Hispanic treated controls, 48 Asian ancestry treated controls, 235 other ancestry treated controls	NA	9q21.13	PCSK5	rs11144550-A	0.137	3E-6				Affymetrix, Illumina [NR] (imputed)	N
1182	chr9	78276674	78276675	rs10512049	21116278	Furney SJ	2010-11-30	Mol Psychiatry	Genome-wide association with MRI atrophy measures as a quantitative trait locus for Alzheimer's disease.	Total ventricular volume (Alzheimer's disease interaction)	424 European ancestry mild cognitive impairment cases, 236 European ancestry Alzheimer's disease cases, 279 European ancestry controls	NA	9q21.13	PCSK5	rs10512049-?	NR	3E-6		0.007	[NR] unit decrease	Illumina [478011]	N
1182	chr9	78290839	78290840	rs11521830	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9q21.13		rs11521830-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1182	chr9	78344531	78344532	rs17061634	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	9q21.13	intergenic	rs17061634-A	NR	8E-6				Illumina [up to 11995908] (imputed)	N
1183	chr9	78425924	78425925	rs12344488	20708005	Chalasani N	2010-08-10	Gastroenterology	Genome-wide association study identifies variants associated with histologic features of nonalcoholic Fatty liver disease.	Non-alcoholic fatty liver disease histology (AST)	236 European ancestry cases	NA	9q21.13	intergenic	rs12344488-A	0.07	5E-6		0.51	[NR] unit decrease	Illumina [324623]	N
1183	chr9	78473902	78473903	rs1326906	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	9q21.13	RFK	rs1326906-?	NR	2E-6	(TAG 50:1)	0.8552648	[0.51-1.2] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1183	chr9	78502988	78502989	rs79941005	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental longevity (mother's age at death)	52,776 middle-aged British individuals	NA	9q21.13	NR	rs79941005-?	NR	3E-6		0.08241	[0.048-0.117] unit decrease	Affymetrix [9658292] (imputed)	N
1183	chr9	78503157	78503158	rs7874251	30946743	Li Z	2019-04-04	PLoS Genet	Genome-wide association study in Turkish and Iranian populations identify rare familial Mediterranean fever gene (MEFV) polymorphisms associated with ankylosing spondylitis.	Ankylosing spondylitis	921 Turkish ancestry cases, 907 Turkish ancestry controls, 422 Iranian ancestry cases, 754 Iranian ancestry controls	NA	9q21.13	PCSK5	rs7874251-G	NR	6E-6		1.5151515	[1.52-1.52]	Illumina [up to 294091]	N
1183	chr9	78504728	78504729	rs3814115	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	9q21.13	PCSK5	rs3814115-C	NR	3E-11		0.0220384	[0.016-0.029] unit increase	Affymetrix [321114] (imputed)	N
1183	chr9	78505691	78505692	rs76937529	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	9q21.13	PCSK5	rs76937529-T	NR	4E-11		0.029332	[0.021-0.038] unit decrease	Affymetrix [321114] (imputed)	N
1183	chr9	78505691	78505692	rs76937529	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	9q21.13		rs76937529-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1183	chr9	78509528	78509529	rs10283891	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	9q21.13	PCSK5	rs10283891-C	NR	3E-8		0.0209525	[0.014-0.028] unit increase	Affymetrix [321114] (imputed)	N
1183	chr9	78509781	78509782	rs12351112	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	9q21.13	NR	rs12351112-?	NR	9E-10				Affymetrix [~ 8270000] (imputed)	N
1183	chr9	78510822	78510823	rs35344761	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	9q21.13	PCSK5	rs35344761-A	NR	3E-21		0.0449717	[0.036-0.054] unit decrease	Affymetrix [321114] (imputed)	N
1183	chr9	78510822	78510823	rs35344761	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	9q21.13	PCSK5	rs35344761-A	NR	6E-9		0.027784	[0.018-0.037] unit decrease	Affymetrix [323858] (imputed)	N
1183	chr9	78510822	78510823	rs35344761	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	9q21.13	NR	rs35344761-?	NR	2E-33				Affymetrix [~ 8270000] (imputed)	N
1183	chr9	78510822	78510823	rs35344761	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	9q21.13	PCSK5	rs35344761-A	0.119004	8E-24		0.03798	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1183	chr9	78510822	78510823	rs35344761	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	9q21.13	PCSK5	rs35344761-A	0.119004	2E-31	(females)	0.06166	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1183	chr9	78510822	78510823	rs35344761	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	9q21.13	PCSK5	rs35344761-A	0.119004	5E-27	(females)	0.05599	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1183	chr9	78510822	78510823	rs35344761	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	9q21.13	PCSK5	rs35344761-A	0.119004	2E-20		0.0335	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1183	chr9	78510822	78510823	rs35344761	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	9q21.13	PCSK5	rs35344761-A	0.126	1E-6		0.0519	[0.031-0.073] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1183	chr9	78511888	78511889	rs35307904	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	9q21.13		rs35307904-A	NR	4E-11		0.0178	[0.013-0.023] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1183	chr9	78511888	78511889	rs35307904	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	9q21.13		rs35307904-A	NR	4E-84		0.041	[0.037-0.045] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1183	chr9	78511888	78511889	rs35307904	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	9q21.13		rs35307904-A	0.080874	5E-18		0.0331149	[0.026-0.041] unit decrease	Illumina [13479295] (imputed)	N
1183	chr9	78511888	78511889	rs35307904	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	9q21.13	PCSK5	rs35307904-A	NR	1E-8		0.0267728	[0.018-0.036] unit decrease	Affymetrix [323123] (imputed)	N
1183	chr9	78511888	78511889	rs35307904	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	9q21.13	PCSK5	rs35307904-?	NR	4E-21		0.050760236	[0.04-0.061] unit decrease	Illumina [27896057] (imputed)	N
1183	chr9	78511888	78511889	rs35307904	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9q21.13		rs35307904-?	NR	2E-106				NR [~ 8900000] (imputed)	N
1184	chr9	78513449	78513450	rs34801106	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	9q21.13	PCSK5	rs34801106-G	NR	4E-8		0.0410074	[0.026-0.056] unit decrease	Affymetrix [321114] (imputed)	N
1184	chr9	78515194	78515195	rs35650604	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	9q21.13	PCSK5	rs35650604-G	NR	3E-12		0.0290265	[0.021-0.037] unit decrease	Affymetrix [321016] (imputed)	N
1184	chr9	78516777	78516778	rs7034405	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	9q21.13	PCSK5	rs7034405-C	NR	1E-8		0.0192013	[0.013-0.026] unit increase	Affymetrix [321114] (imputed)	N
1184	chr9	78518998	78518999	rs10869665	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Intraocular pressure	133,492 European ancestry individuals	NA	9q21.13	PCSK5	rs10869665-C	0.7	1E-8				Affymetrix, Illumina [8002429] (imputed)	N
1184	chr9	78518998	78518999	rs10869665	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Intraocular pressure	133,492 European ancestry individuals	NA	9q21.13	PCSK5	rs10869665-?	NR	4E-9		0.082	[0.055-0.109] unit decrease	Affymetrix, Illumina [up to 40000000] (imputed)	N
1184	chr9	78518998	78518999	rs10869665	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	9q21.13	PCSK5	rs10869665-C	0.701	1E-10		0.09	[0.063-0.117] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1184	chr9	78542285	78542286	rs11144688	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in non-smokers	77,113 European ancestry women, 47,319 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	9q21.13	PCSK5	rs11144688-A	0.1159	1E-6		0.0362	[0.022-0.051] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1184	chr9	78542285	78542286	rs11144688	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	9q21.13	PCSK5	rs11144688-A	0.1159	5E-6				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1184	chr9	78542285	78542286	rs11144688	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	9q21.13	PCSK5	rs11144688-A	0.1159	4E-6		0.0308	[0.018-0.044] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1184	chr9	78542285	78542286	rs11144688	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	9q21.13	PCSK5	rs11144688-A	0.1258	2E-8	(EA)	0.0336	[0.022-0.045] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1184	chr9	78542285	78542286	rs11144688	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	9q21.13	PCSK5	rs11144688-A	0.108	6E-24		0.063	[0.051-0.075] unit decrease	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
1184	chr9	78542285	78542286	rs11144688	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	9q21.13	PCSK5	rs11144688-G	0.89	4E-16		1.48	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
1184	chr9	78542285	78542286	rs11144688	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	9q21.13	PCSK5	rs11144688-A	0.11	1E-11		0.049	[NR] unit decrease	Affymetrix, Illumina [2834208] (imputed)	N
1184	chr9	78561842	78561843	rs1557003	29860282	Scelsi MA	2018-05-30	Brain	Genetic study of multimodal imaging Alzheimer's disease progression score implicates novel loci.	Alzheimer's disease progression score	944 European ancestry individuals	NA	9q21.13	PCSK5	rs1557003-?		4E-6	(corrected for APOE4 status and baseline cortical amyloid)	0.05	[NR] unit decrease	Illumina [5137218] (imputed)	N
1184	chr9	78581101	78581102	rs17061846	34624637	Zainul Abidin FN	2021-09-21	Neuroimage Clin	Glucose hypometabolism in the Auditory Pathway in Age Related Hearing Loss in the ADNI cohort.	Age related hearing loss-related regional glucose metabolism (Bilateral Heschl's gyrus)	228 European ancestry cases, 587 European ancestry controls	NA	9q21.13		rs17061846-?	NR	5E-6		0.341	[0.2-0.49] unit increase	Illumina [5082878] (imputed)	N
1184	chr9	78599132	78599133	rs6560480	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA		PCSK5	rs6560480-C	NR	9E-7		1.49	[NR]	Illumina [up to 547389]	N
1184	chr9	78632208	78632209	rs1890558	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or major depressive disorder	11,361 European ancestry schizophrenia female cases, 20,206 European ancestry schizophrenia male cases, 11,897 European ancestry bipolar disorder female cases, 8,027 European ancestry bipolar disorder male cases, 10,865 European ancestry major depressive disorder female cases, 5,105 major depressive disorder male cases, 46,410 European ancestry female controls, 46,615 European ancestry male controls, 686 East Asian ancestry schizophrenia female cases, 1,907 East Asian ancestry female controls, 1,150 East Asian ancestry schizophrenia male cases, 1,476 East Asian ancestry male controls	NA	9q21.13	PCSK5	rs1890558-A	0.6882	4E-6	(male)	0.0627	[0.036-0.089] unit decrease	NR [NR] (imputed)	N
1184	chr9	78632208	78632209	rs1890558	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or major depressive disorder	11,361 European ancestry schizophrenia female cases, 20,206 European ancestry schizophrenia male cases, 11,897 European ancestry bipolar disorder female cases, 8,027 European ancestry bipolar disorder male cases, 10,865 European ancestry major depressive disorder female cases, 5,105 major depressive disorder male cases, 46,410 European ancestry female controls, 46,615 European ancestry male controls	NA	9q21.13	PCSK5	rs1890558-A	NR	4E-6	(male)	0.0627	[0.036-0.089] unit decrease	NR [NR] (imputed)	N
1185	chr9	78651490	78651491	rs10521467	31362389	Chen YC	2019-07-29	J Clin Med	LRRTM4 and PCSK5 Genetic Polymorphisms as Markers for Cognitive Impairment in A Hypotensive Aging Population: A Genome-Wide Association Study in Taiwan.	Hypotension and cognitive impairment	56 Han Chinese ancestry cases, 1,799 Han Chinese ancestry controls	NA	9q21.13	PCSK5	rs10521467-G	0.12	8E-6		2.94	[1.83-4.75]	NR [590244]	N
1185	chr9	78655926	78655927	rs6560488	32804141	Wang RZ	2020-08-10	J Alzheimers Dis	Genome-Wide Association Study of Brain Alzheimer's Disease-Related Metabolic Decline as Measured by [18F] FDG-PET Imaging.	Cerebral glucose metabolic decline (left temporal gyrus)	67 European ancestry Alzheimer's disease cases, 323 European ancestry mild cognitive impairment cases, 196 European ancestry individuals with normal cognition	NA	9q21.13		rs6560488-?	0.39	4E-7		0.046	unit decrease	Illumina [278989]	N
1185	chr9	78665775	78665776	rs7047865	23319000	Luykx JJ	2013-01-15	Mol Psychiatry	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (5-HIAA)	up to 398 European ancestry individuals	NA	9q21.13	PCSK5	rs7047865-G	NR	5E-6		0.2188	unit increase	Illumina [5767231] (imputed)	N
1185	chr9	78665775	78665776	rs7047865	22959728	Ahmeti KB	2012-09-05	Neurobiol Aging	Age of onset of amyotrophic lateral sclerosis is modulated by a locus on 1p34.1.	Amyotrophic lateral sclerosis (age of onset)	4,243 European ancestry cases	NA	9q21.13	PCSK5	rs7047865-G	0.41	7E-6	(Meta)			Illumina [254145]	N
1185	chr9	78729175	78729176	rs1571790	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	9q21.13	NR	rs1571790-T	NR	2E-10		0.0156	[0.011-0.02] unit decrease	Affymetrix [9000000] (imputed)	N
1185	chr9	78729175	78729176	rs1571790	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	9q21.13	NR	rs1571790-T	NR	4E-12		0.017	[0.012-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
1185	chr9	78729175	78729176	rs1571790	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	9q21.13	NR	rs1571790-T	NR	1E-10		0.0159	[0.011-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
1185	chr9	78729175	78729176	rs1571790	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	9q21.13	PCSK5	rs1571790-?	NR	2E-11		0.0178	[0.013-0.023] unit increase	Affymetrix [5701386] (imputed)	N
1185	chr9	78730765	78730766	rs6560499	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	9q21.13	PCSK5	rs6560499-G	0.423994	8E-9		0.0122425	[0.0081-0.0164] unit increase	Affymetrix [NR] (imputed)	N
1185	chr9	78730765	78730766	rs6560499	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	9q21.13	PCSK5	rs6560499-G	0.424039	8E-9		0.0122165	[0.0081-0.0164] unit increase	Affymetrix [NR] (imputed)	N
1185	chr9	78732457	78732458	rs149612751	34074324	Wan JY	2021-06-01	Diabetol Metab Syndr	Genome-wide association analysis of metabolic syndrome quantitative traits in the GENNID multiethnic family study.	Weight	281 African American individuals from 73 families, 516 European ancestry individuals from 75 families, 125 Japanese American individuals from 15 families, 598 Mexican American individuals from 96 families	NA	9q21.13	PCSK5	rs149612751-T	0.02	5E-7	(EA)	1.08	[0.65-1.51] unit increase	Illumina [up to 13042663] (imputed)	N
1185	chr9	78740352	78740353	rs10120333	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	9q21.13	PCSK5	rs10120333-G	0.530818714671412	2E-8		0.003041	[NR] unit increase	Affymetrix [> 30000000] (imputed)	N
1185	chr9	78745176	78745177	rs7035578	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	9q21.13	PCSK5	rs7035578-A	NR	6E-9	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1185	chr9	78745176	78745177	rs7035578	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	9q21.13	PCSK5	rs7035578-A	NR	3E-8				Affymetrix, Illumina [NR] (imputed)	N
1185	chr9	78745176	78745177	rs7035578	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	9q21.13	PCSK5	rs7035578-A	NR	9E-9				Affymetrix, Illumina [NR] (imputed)	N
1185	chr9	78745176	78745177	rs7035578	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	9q21.13	PCSK5	rs7035578-A	NR	1E-9	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1185	chr9	78747786	78747787	rs7853818	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	9q21.13		rs7853818-C	0.39	5E-9		5.83	z score increase	Affymetrix [9061022] (imputed)	N
1185	chr9	78756885	78756886	rs7869196	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	9q21.13	PCSK5	rs7869196-?	NR	2E-11		0.021059182	[0.015-0.027] unit decrease	Illumina [27896057] (imputed)	N
1185	chr9	78759704	78759705	rs958225	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	9q21.13	NR	rs958225-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
1185	chr9	78759704	78759705	rs958225	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	9q21.13		rs958225-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1186	chr9	78792698	78792699	rs11144779	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	9q21.13	PCSK5	rs11144779-C	NR	3E-8		0.0189679	[0.012-0.026] unit decrease	Affymetrix [321114] (imputed)	N
1186	chr9	78792698	78792699	rs11144779	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	9q21.13	NR	rs11144779-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
1186	chr9	78792698	78792699	rs11144779	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9q21.13		rs11144779-?	NR	2E-20				NR [~ 8900000] (imputed)	N
1186	chr9	78793420	78793421	rs11144781	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Vascular brain injury	up to 2,940 individuals	NA	9q21.13	PCSK5	rs11144781-T	0.0318	2E-6	(Ordinal)	0.7998	[0.47-1.13] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1186	chr9	78793420	78793421	rs11144781	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Vascular brain injury	up to 2,940 individuals	NA	9q21.13	PCSK5	rs11144781-T	0.0316	3E-6		0.8393	[0.49-1.19] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1186	chr9	78800375	78800376	rs11144784	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	9q21.13	NR	rs11144784-G	0.076	6E-6	(IFNalpha_ABC_of_monocytes)			Illumina [5084123] (imputed)	N
1186	chr9	78810116	78810117	rs13287050	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Stem cell growth factor beta levels	3,682 Finnish ancestry individuals	NA	9q21.13	NR	rs13287050-T		2E-6		0.1242	[0.072-0.176] SD units increase	NR [10700000] (imputed)	N
1186	chr9	78812471	78812472	rs11144790	22633400	Kosova G	2012-05-23	Am J Hum Genet	Genome-wide association study identifies candidate genes for male fertility traits in humans.	Male fertility	269 Hutterite males	NA	9q21.13	PCSK5	rs11144790-A	0.07	6E-6	(Family size, additive model)			Affymetrix [248210]	N
1186	chr9	78831442	78831443	rs73650494	31164008	Mullins N	2019-06-05	Am J Psychiatry	GWAS of Suicide Attempt in Psychiatric Disorders and Association With Major Depression Polygenic Risk Scores.	Suicide attempts in schizophrenia	1,683 European ancestry attempters, 2,946 European ancestry nonattempters	NA	9q21.13	NR	rs73650494-C	0.020000000000000018	5E-6		1.7857143	[1.39-2.33]	NR [8814543] (imputed)	N
1186	chr9	78837653	78837654	rs62563392	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Pursuit maintenance gain	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	9q21.13	PCSK5	rs62563392-A	0.06612	3E-6	(EA)			Illumina [4404269] (imputed)	N
1186	chr9	78841400	78841401	rs10746997	23149075	Aslibekyan S	2012-11-10	Nutr Metab Cardiovasc Dis	Preliminary evidence of genetic determinants of adiponectin response to fenofibrate in the Genetics of Lipid Lowering Drugs and Diet Network.	Response to fenofibrate (adiponectin levels)	793 European ancestry individuals	NA	9q21.13	PCSK5	rs10746997-?	NR	1E-6	(Baseline)	0.14	[0.081-0.199] ng/dL decrease	Affymetrix [2543887] (imputed)	N
1186	chr9	78865299	78865300	rs1587103	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9q21.13		rs1587103-?	NR	3E-11				NR [~ 8900000] (imputed)	N
1187	chr9	78906149	78906150	rs2842483	19010793	Baranzini SE	2008-11-14	Hum Mol Genet	Genome-wide association analysis of susceptibility and clinical phenotype in multiple sclerosis.	Multiple sclerosis (age of onset)	978 European ancestry cases, 883 European ancestry controls	NA	9q21.13	RFK	rs2842483-?	0.29	5E-6			[NR]	Illumina [551642]	N
1187	chr9	78917377	78917378	rs11788518	27569725	Yang SK	2016-08-25	Gastroenterology	Identification of Loci at 1q21 and 16q23 That Affect Susceptibility to Inflammatory Bowel Disease in Koreans.	Inflammatory bowel disease	1,505 Korean ancestry cases, 4,041 Korean ancestry controls	1,989 Korean ancestry cases, 3,491 Korean ancestry controls	9q21.13	PCSK5	rs11788518-T	0.03	7E-6		1.39	[NR]	Illumina [522285]	N
1188	chr9	79038169	79038170	rs6560517	21546767	Murea M	2011-05-05	Am J Nephrol	Genome-wide association scan for survival on dialysis in African-Americans with type 2 diabetes.	Dialysis-related mortality	610 African American type 2 diabetes cases	NA	9q21.13	GCNT1, RPSAP9	rs6560517-?	0.71	7E-6		1.56	[1.28-1.89]	Affymetrix [832357]	N
1188	chr9	79049156	79049157	rs10869777	27595289	Goyal RK	2016-09-05	Bone Marrow Transplant	Novel HLA-DP region susceptibility loci associated with severe acute GvHD.	Acute graft versus host disease in bone marrow transplantation (recipient effect)	291 European ancestry recipients with acute graft versus host disease, 288 European ancestry recipients without acute graft versus host disease	NA	9q21.13	GCNT1	rs10869777-?		2E-7				Affymetrix [905761]	N
1188	chr9	79082711	79082712	rs186132788	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	9q21.13	GCNT1	rs186132788-A	0.994	2E-6	(AA)	0.183	NR unit increase	Illumina [NR] (imputed)	N
1188	chr9	79110159	79110160	rs602075	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (genus Allisonella id.2174)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	9q21.13		rs602075-A	NR	4E-8		5.5111113	z score increase	Affymetrix, Illumina [NR] (imputed)	N
1188	chr9	79118399	79118400	rs147866228	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Monocyte count	443,529 European ancestry individuals	NA	9q21.13		rs147866228-?	NR	4E-11		0.073494	[0.051-0.096] unit decrease	NR [9800000] (imputed)	N
1188	chr9	79118399	79118400	rs147866228	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	9q21.13	GCNT1	rs147866228-T	0.00772799999999996	5E-10		0.07831826	[0.054-0.103] unit decrease	Affymetrix [93095623] (imputed)	N
1188	chr9	79118399	79118400	rs147866228	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	9q21.13	NR	rs147866228-C	0.992285	4E-11		0.072269	[0.051-0.094] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
1188	chr9	79151864	79151865	rs10781366	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	P-selectin glycoprotein ligand 1 levels	21,758 European ancestry individuals	9,173 individuals	9q21.13		rs10781366-A	0.32	8E-17		0.0874	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1188	chr9	79156991	79156992	rs4745559	33095540	Sherman BT	2020-10-20	AIDS	Genome-wide association study of high-sensitivity C-reactive protein, D-dimer and Interleukin-6 levels in multi-ethnic HIV+ cohorts.	D-dimer levels in HIV infection	4,675 European ancestry individuals, 1,732 African ancestry individuals, 645 Admixed American individuals	NA	9q21.13	GCNT1	rs4745559-C	0.146	2E-8		0.085	[0.055-0.115] unit increase	Affymetrix [up to 12642786] (imputed)	N
1189	chr9	79224492	79224493	rs117012726	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Antisaccade task score	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	9q21.2	PRUNE2	rs117012726-A	NR	9E-6		0.15082432	[0.1-0.2] unit decrease	Illumina [> 6200000] (imputed)	N
1189	chr9	79245148	79245148	rs58831160	29698431	Roosenboom J	2018-04-26	PLoS One	Mapping genetic variants for cranial vault shape in humans.	Maximum cranial width	4,419 European ancestry individuals	NA	9q21.2	NR	rs58831160-CT	0.2213	2E-6		0.7411	[0.38-1.1] unit increase	Illumina [at least 567677] (imputed)	N
1189	chr9	79282047	79282048	rs664414	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	9q21.2	PRUNE2	rs664414-G	0.609591	1E-12		0.016503613	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1190	chr9	79305708	79305709	rs678943	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-to-hip ratio adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,049 whole genome sequenced individuals, 29,518 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,001 Mylopotamos (founder/genetic isolate) individuals, 867 Pomak (founder/genetic isolate) individuals	206,045 European ancestry individuals	9q21.2	PRUNE2	rs678943-T	0.7172	8E-6		0.0404	[0.023-0.058] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1190	chr9	79308692	79308693	rs556725	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	9q21.2	NR	rs556725-C	NR	4E-9		0.016	[0.011-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
1190	chr9	79314290	79314291	rs594586	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	9q21.2		rs594586-A	NR	2E-9		0.0164	[0.011-0.022] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
1190	chr9	79317721	79317722	rs646698	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q21.2	NR	rs646698-A	0.804526	1E-12				Affymetrix, Illumina [24649327] (imputed)	N
1190	chr9	79319559	79319560	rs618145	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q21.2	NR	rs618145-C	0.788294	7E-16				Affymetrix, Illumina [23114412] (imputed)	N
1190	chr9	79322673	79322674	rs680775	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	9q21.2	PRUNE2	rs680775-G	0.759274	1E-14		0.019957393	[0.015-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1190	chr9	79322719	79322720	rs680729	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	9q21.2		rs680729-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1190	chr9	79326679	79326680	rs626416	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	9q21.2	PRUNE2	rs626416-C	0.759518	8E-13		0.018494088	[0.013-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1190	chr9	79326679	79326680	rs626416	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	9q21.2	NR	rs626416-C	0.762943	3E-14		0.016605	[0.012-0.021] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1190	chr9	79326679	79326680	rs626416	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	9q21.2	NR	rs626416-C	0.761969	6E-18		0.019685	[0.015-0.024] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
1190	chr9	79334645	79334646	rs116955235	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	9q21.2	NR	rs116955235-T	0.0	9E-6		2.72	[2.27-3.17]	Illumina [8468885] (imputed)	N
1190	chr9	79346203	79346204	rs7852129	31235808	Shungin D	2019-06-24	Nat Commun	Genome-wide analysis of dental caries and periodontitis combining clinical and self-reported data.	Number of decayed, missing and filled tooth surfaces or use of dentures	14,976 European ancestry individuals with decayed, missing or filled tooth surface measurement, 11,816 Hispanic/Latino individuals with decayed, missing or filled tooth surface measurement, 77,714 European ancestry dentures cases, 383,317 European ancestry controls	NA	9q21.2	PRUNE2	rs7852129-A	0.89	8E-11		0.025	[0.018-0.032] unit decrease	Affymetrix, Illumina [~ 8900000] (imputed)	N
1190	chr9	79346203	79346204	rs7852129	31235808	Shungin D	2019-06-24	Nat Commun	Genome-wide analysis of dental caries and periodontitis combining clinical and self-reported data.	Dentures	77,714 European ancestry cases, 383,317 European ancestry controls	NA	9q21.2	PRUNE2	rs7852129-A	0.89	8E-11		0.051	[0.036-0.066] unit decrease	Affymetrix [at least 8900000] (imputed)	N
1190	chr9	79349007	79349008	rs7040264	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Trunk fat mass	3,399 whole genome sequenced individuals, 12,838 European ancestry individuals	10,667 European ancestry individuals	9q21.2	PRUNE2	rs7040264-T	0.5904	5E-6		0.0572	[0.033-0.082] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1190	chr9	79367366	79367367	rs11145045	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body fat mass	3,399 whole genome sequenced individuals, 11,802 European ancestry individuals	10,670 European ancestry individuals	9q21.2	PRUNE2	rs11145045-T	0.4396	5E-6		0.0538	[0.031-0.077] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1190	chr9	79368270	79368271	rs11338981	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-hip ratio	1,254 whole genome sequenced European ancestry individuals, 3,071 whole genome sequenced individuals, 29,723 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,053 Mylopotamos (founder/genetic isolate) individuals, 879 Pomak (founder/genetic isolate) individuals	206,053 European ancestry individuals	9q21.2	PRUNE2	rs11338981-CT	0.4422	7E-7		0.0403	[0.024-0.056] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1190	chr9	79390202	79390203	rs17784899	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	9q21.2	Intergenic	rs17784899-?		5E-7		1.05	[1.03-1.07]	Illumina [7645193] (imputed)	N
1190	chr9	79390202	79390203	rs17784899	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	9q21.2	Intergenic	rs17784899-?		6E-7		1.5	[1.28-1.76]	Illumina [7645193] (imputed)	N
1190	chr9	79408143	79408144	rs10781380	19668339	Potkin SG	2009-08-07	PLoS One	Hippocampal atrophy as a quantitative trait in a genome-wide association study identifying novel susceptibility genes for Alzheimer's disease.	Hippocampal atrophy	162 European ancestry cases, 192 European ancestry controls, 7 African American cases, 14 African American controls, 1 Asian ancestry cases, 3 Asian ancestry controls, 2 cases	NA	9q21.2	PRUNE2	rs10781380-?	NR	7E-7				Illumina [516645]	N
1190	chr9	79423610	79423611	rs117299725	32378780	Park B	2020-05-07	Cancer Sci	Genome-Wide Association Study of Genetic Variants Related to Anthracycline-Induced Cardiotoxicity in Early Breast Cancer.	Anthracycline-induced cardiotoxicity in early breast cancer	42 Korean ancestry cases, 215 Korean ancestry controls	NA	9q21.2	PRUNE2	rs117299725-A	0.055	3E-6				NR [346946]	N
1192	chr9	79608945	79608946	rs115747230	31178898	Lin BM	2019-05-24	Front Genet	Genetics of Chronic Kidney Disease Stages Across Ancestries: The PAGE Study.	End-stage kidney disease	584 African American cases, 282 Hispanic cases, 112 East Asian cases, 96 Native Hawaiian cases, 1 American Indian cases, 30 cases, 8,429 African American controls, 15,852 Hispanic controls, 3,536 East Asian controls, 2,892 Native Hawaiian controls, 49 American Indian controls, 936 controls	NA	9q21.2	FOXB2	rs115747230-C	0.021	4E-7		1.88	[1.47-2.39]	Illumina [1438399] (imputed)	N
1192	chr9	79610627	79610628	rs79460104	22952603	Hart AB	2012-08-28	PLoS One	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 10 individuals	NA	9q21.2	intergenic	rs79460104-?	NR	4E-6	(SF10)			Affymetrix [5476100] (imputed)	N
1192	chr9	79627259	79627260	rs62568141	28753643	Yeo A	2017-07-28	PLoS One	Pharmacogenetic meta-analysis of baseline risk factors, pharmacodynamic, efficacy and tolerability endpoints from two large global cardiovascular outcomes trials for darapladib.	Moderate or severe diarrhoea in darapladib-treated cardiovascular disease (time to event)	212 European ancestry cases	NA	9q21.2	intergenic	rs62568141-T	0.0303	7E-11		3.36	[2.34-4.84]	Affymetrix, Illumina [9334585] (imputed)	N
1192	chr9	79663575	79663576	rs11145236	30621171	Coltell O	2019-01-04	Nutrients	Genome-Wide Association Study (GWAS) on Bilirubin Concentrations in Subjects with Metabolic Syndrome: Sex-Specific GWAS Analysis and Gene-Diet Interactions in a Mediterranean Population.	Serum bilirubin levels in metabolic syndrome	188 European ancestry male individuals, 242 European ancestry female individuals	NA	9q21.2	LOC105376096	rs11145236-C	0.045	7E-6	(women)	0.197	[0.11-0.28] mg/dL increase	Illumina [622468]	N
1192	chr9	79669153	79669154	rs11145243	30621171	Coltell O	2019-01-04	Nutrients	Genome-Wide Association Study (GWAS) on Bilirubin Concentrations in Subjects with Metabolic Syndrome: Sex-Specific GWAS Analysis and Gene-Diet Interactions in a Mediterranean Population.	Serum bilirubin levels in metabolic syndrome	188 European ancestry male individuals, 242 European ancestry female individuals	NA	9q21.2	LOC105376096	rs11145243-G	0.043	4E-6	(women)	0.204	[0.12-0.29] mg/dL increase	Illumina [622468]	N
1192	chr9	79675879	79675880	rs147213018	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	9q21.2	Intergenic	rs147213018-A	NR	2E-7	(between families)	5.213	unit increase	Affymetrix [up to 15107142] (imputed)	N
1192	chr9	79686436	79686437	rs1928480	29064910	Kure Fischer E	2017-10-23	Int Clin Psychopharmacol	A molecular pathway analysis informs the genetic risk for arrhythmias during antipsychotic treatment.	Antipsychotic drug-induced QTc interval change in schizophrenia	434 European ancestry individuals, 202 African ancestry individuals, 25 individuals	NA	9q21.2	NR	rs1928480-A	NR	7E-6		2500.0	unit decrease	Affymetrix, Perlegen [1785543] (imputed)	N
1193	chr9	79732264	79732264	rs146782711	33087363	Xu W	2020-10-21	Sci Adv	The FAM171A2 gene is a key regulator of progranulin expression and modifies the risk of multiple neurodegenerative diseases.	Cerebrospinal fluid progranulin levels	432 European ancestry individuals	930 Han Chinese ancestry individuals	9q21.2	NR	rs146782711-TAAATA	NR	2E-6	(EA)	0.00213	NR unit decrease	Illumina [3262988] (imputed)	N
1193	chr9	79761710	79761711	rs12345013	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental longevity (combined parental age at death)	45,627 middle-aged British individuals	NA	9q21.2	NR	rs12345013-?	NR	3E-7		0.07345	[0.045-0.101] unit decrease	Affymetrix [9658292] (imputed)	N
1193	chr9	79765570	79765571	rs1953019	32568366	Raghavan NS	2020-06-22	JAMA Neurol	Association Between Common Variants in RBFOX1, an RNA-Binding Protein, and Brain Amyloidosis in Early and Preclinical Alzheimer Disease.	Brain amyloid deposition (PET imaging)	4,120 Europea ancestry individuals, 89 African American individuals, 105 Hispanic individuals	NA	9q21.2	NR	rs1953019-C		6E-7		0.2843	[0.17-0.4] unit increase	Illumina [NR] (imputed)	N
1193	chr9	79782634	79782635	rs116974427	33332786	Zhang Y	2020-12-15	Spine (Phila Pa 1976)	Genome-Wide Association Analysis Across 16,956 Patients Identifies a Novel Genetic Association Between BMP6, NIPAL1, CNGA1 and Spondylosis.	Spondylosis	4,434 European ancestry cases, 9,416 European ancestry controls	NA	9q21.2	VPS13A-AS1	rs116974427-A	NR	2E-6		1.104	[1.060- 1.150]	Illumina [6740241] (imputed)	N
1193	chr9	79798535	79798536	rs112409426	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	9q21.2	VPS13A	rs112409426-T	0.208831	9E-13		0.0194718	[0.014-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1193	chr9	79800110	79800111	rs11145324	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	9q21.2	NR	rs11145324-C	0.208404	6E-17		0.020876	[0.016-0.026] SD unit decrease	Affymetrix, Illumina [50282193] (imputed)	N
1193	chr9	79802985	79802986	rs12338283	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	9q21.2		rs12338283-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1193	chr9	79803749	79803750	rs6560581	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	9q21.2	NR	rs6560581-C	0.804419	4E-11		0.01587	[0.011-0.021] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
1193	chr9	79814193	79814194	rs62573167	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	9q21.2	VPS13A	rs62573167-T	0.2088	4E-12		0.0307451	[0.022-0.039] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1194	chr9	79860271	79860272	rs12351061	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	9q21.2	VPS13A	rs12351061-G	0.209911	7E-53		0.04218368	[0.037-0.048] unit increase	Affymetrix [93095623] (imputed)	N
1194	chr9	79860552	79860553	rs12337882	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	9q21.2		rs12337882-A	NR	3E-33		0.0339	[0.028-0.039] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
1194	chr9	79862741	79862742	rs58674255	31659325	Malhotra R	2019-10-28	Nat Genet	HDAC9 is implicated in atherosclerotic aortic calcification and affects vascular smooth muscle cell phenotype.	Thoracic aortic calcification levels	8,422 European ancestry individuals	NA	9q21.2	VPS13A	rs58674255-C	0.23	9E-8		5.35	z score increase	Affymetrix, Illumina [9000000] (imputed)	N
1194	chr9	79896655	79896657	rs140324455	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental longevity (combined parental age at death)	45,627 middle-aged British individuals	NA	9q21.2	NR	rs140324455-?	NR	4E-7		0.07378	[0.045-0.102] unit decrease	Affymetrix [9658292] (imputed)	N
1194	chr9	79905422	79905423	rs11145376	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	9q21.2	VPS13A	rs11145376-C	0.210594	2E-27		0.029842194	[0.024-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
1194	chr9	79905422	79905423	rs11145376	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	9q21.2	VPS13A	rs11145376-C	0.210593	4E-28		0.030182889	[0.025-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
1194	chr9	79919443	79919444	rs72744286	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	9q21.2	NR	rs72744286-A	NR	1E-15		0.034	[0.026-0.042] unit increase	Affymetrix [9000000] (imputed)	N
1194	chr9	79925531	79925531	rs10684818	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	9q21.2	VPS13A	rs10684818-TCAC	0.20636	3E-54		0.043274187	[0.038-0.049] unit increase	Affymetrix [93095623] (imputed)	N
1194	chr9	79925875	79925876	rs7025656	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	9q21.2	VPS13A	rs7025656-G	0.2105	7E-12		0.03017207	[0.022-0.039] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1194	chr9	79946049	79946050	rs146783254	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	9q21.2	VPS13A	rs146783254-A	0.212321	1E-15		0.021868555	[0.017-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1194	chr9	79946049	79946050	rs146783254	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	9q21.2	VPS13A	rs146783254-A	0.212308	8E-16		0.021954535	[0.017-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1195	chr9	80015423	80015424	rs12351997	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	9q21.2	VPS13A	rs12351997-T	0.7966	4E-14		0.0131	[0.0098-0.0164] unit decrease	Affymetrix, Illumina [33811881] (imputed)	N
1195	chr9	80020873	80020874	rs117983287	27639821	Scherag A	2016-09-15	EBioMedicine	Genetic Factors of the Disease Course after Sepsis: A Genome-Wide Study for 28Day Mortality.	Mortality in sepsis	149 European ancestry cases, 591 European ancestry controls	up to 2,534 individuals	9q21.2	VPS13A	rs117983287-A	0.01	8E-8	(European)	18.2		Illumina [7993459] (imputed)	N
1195	chr9	80031143	80031144	rs12343797	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q21.2	NR	rs12343797-A	0.176708	1E-15				Affymetrix, Illumina [21126107] (imputed)	N
1195	chr9	80040946	80040947	rs12352759	31659325	Malhotra R	2019-10-28	Nat Genet	HDAC9 is implicated in atherosclerotic aortic calcification and affects vascular smooth muscle cell phenotype.	Thoracic aortic calcification levels	8,422 European ancestry individuals	NA	9q21.2	GNA14	rs12352759-T	0.224	6E-7		5.0	z score increase	Affymetrix, Illumina [9000000] (imputed)	N
1195	chr9	80051955	80051962	rs138187787	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	9q21.2		rs138187787-G	NR	4E-8		0.0187	[0.012-0.025] unit decrease	Affymetrix, Illumina [20536605] (imputed)	N
1195	chr9	80063053	80063054	rs10869925	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	9q21.2	NR	rs10869925-?	NR	3E-7				Affymetrix [NR]	N
1196	chr9	80117748	80117749	rs117558151	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 15, philtrum width)	2,187 European ancestry individuals	NA	9q21.2	NR	rs117558151-C	0.02064	8E-7		0.524	[0.32-0.73] unit increase	Illumina [10677593] (imputed)	N
1197	chr9	80223822	80223823	rs2210755	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Eotaxin levels	8,153 Finnish ancestry individuals	NA	9q21.2	NR	rs2210755-C	NR	5E-6		0.1104	[0.063-0.158] SD units increase	NR [10700000] (imputed)	N
1197	chr9	80300749	80300750	rs189574365	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	9q21.2	GNA14, GNAQ	rs189574365-A	0.0243	6E-6		1.18175	[1.11-1.25]	NR [9372253] (imputed)	N
1197	chr9	80320364	80320365	rs4745661	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	9q21.2	NR	rs4745661-G	0.684846625	3E-6	(IGP10)	0.1618	[0.094-0.23] unit decrease	Illumina [~ 2500000] (imputed)	N
1198	chr9	80381495	80381496	rs77893395	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9q21.2	NR	rs77893395-A	0.01045	1E-8	(PBDC1)	0.02624	NR unit increase	Illumina [1671387] (imputed)	N
1198	chr9	80471417	80471418	rs116434758	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9q21.2	NR	rs116434758-C	0.01045	1E-8	(PBDC1)	0.02626	NR unit increase	Illumina [1671387] (imputed)	N
1199	chr9	80498558	80498559	rs4744854	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	9q21.2		rs4744854-C	NR	2E-33		0.0283	[0.024-0.033] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
1199	chr9	80498558	80498559	rs4744854	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	9q21.2	NR	rs4744854-C	0.6273	2E-32		0.002734	[0.0023-0.0032] unit decrease	Affymetrix [NR] (imputed)	N
1199	chr9	80510076	80510077	rs13291723	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	9q21.2		rs13291723-?	NR	6E-9				NR [~ 8900000] (imputed)	N
1199	chr9	80532373	80532374	rs10116186	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	9q21.2	NA	rs10116186-A	0.4591	2E-9		0.0116	[0.0079-0.0153] unit decrease	NR [~ 27400000] (imputed)	N
1199	chr9	80597625	80597626	rs72738418	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9q21.2	NR	rs72738418-C	0.0122	7E-9	(PLD3)	0.02719	NR unit increase	Illumina [1671387] (imputed)	N
1200	chr9	80635498	80635499	rs7028424	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	9q21.2	NR	rs7028424-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
1200	chr9	80639294	80639295	rs11145656	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	9q21.2		rs11145656-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1200	chr9	80710909	80710910	rs13294734	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	9q21.2		rs13294734-?	NR	1E-9		0.012568	[0.0085-0.0166] unit increase	NR [6912294] (imputed)	N
1200	chr9	80718994	80718995	rs7038083	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	9q21.2		rs7038083-G	NR	4E-8		0.0112	[0.0073-0.0151] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
1201	chr9	80744201	80744201	rs34382015	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	9q21.2	GNAQ	rs34382015-C	0.879273	3E-8	(-148 ms)	0.0497582	[0.032-0.067] unit decrease	Affymetrix [10000000] (imputed)	N
1201	chr9	80744201	80744201	rs34382015	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	9q21.2	GNAQ	rs34382015-C	0.879273	2E-8	(-150 ms)	0.0497856	[0.032-0.067] unit decrease	Affymetrix [10000000] (imputed)	N
1201	chr9	80764634	80764635	rs202050864	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9q21.2	NR	rs202050864-G	0.01394	3E-10	(PRDX3)	1.411	NR unit increase	Illumina [1671387] (imputed)	N
1201	chr9	80789360	80789361	rs11145731	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9q21.2	NR	rs11145731-C	0.01394	1E-13	(PRDX3)	1.619	NR unit increase	Illumina [1671387] (imputed)	N
1201	chr9	80808430	80808431	rs10870062	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	9q21.2		rs10870062-A	0.501382	6E-9		0.012797158	[0.0085-0.0171] unit increase	Affymetrix [93095623] (imputed)	N
1201	chr9	80834172	80834173	rs878922	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	9q21.2	NR	rs878922-G	0.500933	6E-12		0.01283	[0.0092-0.0165] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
1202	chr9	80940575	80940576	rs1411916	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral fat	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	9q21.2	PSAT1	rs1411916-A	0.11	4E-6	(women)			Affymetrix, Illumina [2500000] (imputed)	N
1203	chr9	81018311	81018312	rs10867194	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	9q21.2	NR	rs10867194-?	NR	7E-24				Affymetrix [NR]	N
1203	chr9	81075376	81075377	rs141565989	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9q21.2	NR	rs141565989-G	0.01394	6E-9	(SBDS)	0.05629	NR unit increase	Illumina [1671387] (imputed)	N
1203	chr9	81083896	81083897	rs10125737	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	9q21.2	PSAT1	rs10125737-A	0.294	6E-6	(Vigorous activity )	0.03	[NR] %awake time increase	Illumina [899892]	N
1203	chr9	81095007	81095008	rs2938894	35047858	Polikowsky HG	2021-12-02	HGG Adv	Population-based genetic effects for developmental stuttering.	Developmental stuttering	250 African ancestry cases, 1,910 African ancestry controls, 160 Hispanic ancestry cases, 1,186 Hispanic ancestry controls, 42 East Asian ancestry cases, 113 East Asian ancestry controls, 1,565 European ancestry cases, 10,434 European ancestry controls, 44 South Asian ancestry cases, 143 South Asian ancestry controls, 4 Native American ancestry cases, 32 Native American ancestry controls, 44 Asian ancestry cases, 404 Asian ancestry controls, 21 cases, 109 controls	NA	9q21.2		rs2938894-A	0.03	6E-7		5.004	z score decrease	Illumina [7275796] (imputed)	N
1204	chr9	81201761	81201762	rs35067942	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9q21.31	NR	rs35067942-A	0.01045	2E-9	(CALD1)	0.1152	NR unit increase	Illumina [1671387] (imputed)	N
1205	chr9	81268148	81268149	rs149951341	25628336	Hromatka BS	2015-01-26	Hum Mol Genet	Genetic variants associated with motion sickness point to roles for inner ear development, neurological processes and glucose homeostasis.	Motion sickness	80,494 European ancestry individuals	NA	9q21.31	TLE4	rs149951341-C	0.798	3E-12		0.05	[0.036-0.064] unit decrease	Illumina [7428049] (imputed)	N
1205	chr9	81310679	81310680	rs1757948	21810271	Antoni G	2011-08-02	BMC Med Genet	Combined analysis of three genome-wide association studies on vWF and FVIII plasma levels.	vWF and FVIII levels	1,624 European ancestry individuals	NA	9q21.31	KRT18P24	rs1757948-G	0.27	7E-6	(vWF levels)	0.15	[0.09-0.21] IU/dL increase	Illumina [442728]	N
1205	chr9	81334683	81334684	rs1634350	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	9q21.31	NR	rs1634350-?	NR	8E-12				Affymetrix [~ 8270000] (imputed)	N
1205	chr9	81334683	81334684	rs1634350	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	9q21.31	NA	rs1634350-A	0.4355	3E-11		0.0114	[0.0081-0.0147] unit increase	NR [~ 27400000] (imputed)	N
1205	chr9	81344700	81344701	rs1929883	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	9q21.31	NR	rs1929883-G	0.58	5E-10		0.0386	[0.026-0.051] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1205	chr9	81344700	81344701	rs1929883	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	9q21.31	NR	rs1929883-G	0.601	4E-8		0.0275	[0.018-0.037] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1205	chr9	81349607	81349608	rs725959	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	9q21.31		rs725959-?	NR	2E-12				NR [~ 8900000] (imputed)	N
1205	chr9	81354128	81354129	rs4877285	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	9q21.31		rs4877285-G	0.32	2E-9		0.007	[0.005-0.009] unit increase	NR [NR] (imputed)	N
1205	chr9	81354128	81354129	rs4877285	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	9q21.31	NR	rs4877285-A	0.668	5E-12		0.00799016	[0.0057-0.0103] unit decrease	NR [9732723] (imputed)	N
1205	chr9	81354128	81354129	rs4877285	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	9q21.31	NR	rs4877285-A	0.668249	2E-11	(Conditioned on chr9:81444104)	0.018131824	[0.013-0.023] unit decrease	NR [~ 10000000] (imputed)	N
1205	chr9	81354128	81354129	rs4877285	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	9q21.31	NR	rs4877285-A	0.667	1E-8		0.00886115	[0.0058-0.0119] unit increase	NR [9732723] (imputed)	N
1205	chr9	81354128	81354129	rs4877285	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	9q21.31	Intergenic	rs4877285-A	0.6707	3E-8	(MTAG)	0.0078	[0.0051-0.0105] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1205	chr9	81359112	81359113	rs11137820	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	9q21.31	MTND2P8	rs11137820-C	0.5751	3E-8		1.04	[1.02-1.05]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1205	chr9	81368653	81368654	rs117347249	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	9q21.31	NR	rs117347249-?	NR	3E-6				Affymetrix [5486770] (imputed)	N
1205	chr9	81369469	81369470	rs11137826	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	9q21.31		rs11137826-T	NR	5E-9		0.0112	[0.0075-0.0149] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1205	chr9	81382437	81382438	rs72738288	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	9q21.31	NR	rs72738288-?	NR	5E-9				Affymetrix [~ 8270000] (imputed)	N
1206	chr9	81413413	81413414	rs11137850	31926635	Coleman JRI	2019-11-01	Biol Psychiatry	The Genetics of the Mood Disorder Spectrum: Genome-wide Association Analyses of More Than 185,000 Cases and 439,000 Controls.	Bipolar disorder or major depressive disorder	164,933 European ancestry major depressive disorder cases, 20,352 European ancestry bipolar disorder cases, 439,741 European ancestry controls	NA	9q21.31	NR	rs11137850-A	NR	1E-8		1.03	[1.02-1.04]	NR [NR] (imputed)	N
1206	chr9	81444103	81444104	rs1930371	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	9q21.31	NR	rs1930371-T	0.241	7E-11		0.00824508	[0.0058-0.0107] unit decrease	NR [9732723] (imputed)	N
1206	chr9	81444103	81444104	rs1930371	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	9q21.31	NR	rs1930371-T	0.241	7E-9		0.017241959	[0.011-0.023] unit decrease	NR [~ 10000000] (imputed)	N
1206	chr9	81487025	81487026	rs12376674	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	9q21.31	Intergenic	rs12376674-A	0.8762	6E-11	(MTAG)	0.0164	[0.012-0.021] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1206	chr9	81487025	81487026	rs12376674	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	9q21.31	Intergenic	rs12376674-A	0.8715	1E-8	(MTAG)	0.0112	[0.0073-0.0151] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1206	chr9	81501115	81501116	rs10780264	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	9q21.31		rs10780264-G	0.59	9E-13		0.008	[0.006-0.01] unit increase	NR [NR] (imputed)	N
1206	chr9	81503838	81503839	rs1930380	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	9q21.31	Intergenic	rs1930380-T	0.8468	1E-10	(MTAG)	0.016	[0.011-0.021] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1206	chr9	81503838	81503839	rs1930380	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	9q21.31	Intergenic	rs1930380-T	0.8468	6E-9		0.0158	[0.011-0.021] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1206	chr9	81512819	81512820	rs10746578	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	9q21.31	LOC101927450	rs10746578-A	0.660448	5E-9		0.0128821	[0.0086-0.0172] unit decrease	NR [16516521] (imputed)	N
1207	chr9	81626543	81626544	rs17727049	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	9q21.31	NR	rs17727049-?	NR	1E-9				Affymetrix [NR]	N
1207	chr9	81651532	81651533	rs10867332	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	9q21.31		rs10867332-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1208	chr9	81660661	81660662	rs151103977	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9q21.31	NR	rs151103977-G	0.0122	8E-10	(SEPT11)	0.04047	NR unit increase	Illumina [1671387] (imputed)	N
1208	chr9	81679874	81679875	rs4877387	22959728	Ahmeti KB	2012-09-05	Neurobiol Aging	Age of onset of amyotrophic lateral sclerosis is modulated by a locus on 1p34.1.	Amyotrophic lateral sclerosis in C9orf72 mutation positive individuals	up to 4,243 European ancestry cases, up to 5,112 European ancestry controls	NA	9q21.31	intergenic	rs4877387-?	NR	6E-6		1.21	[1.11-1.31]	Illumina [254145]	N
1208	chr9	81692695	81692696	rs4384062	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9q21.31	NR	rs4384062-A	0.02962	1E-8	(ENTPD5)	0.05601	NR unit increase	Illumina [1671387] (imputed)	N
1208	chr9	81727017	81727018	rs13284688	33568662	Dashti HS	2021-02-10	Nat Commun	Genetic determinants of daytime napping and effects on cardiometabolic health.	Daytime nap	452,633 European ancestry individuals	541,333 European ancestry individuals	9q21.31	TLE4, PSAT1	rs13284688-C		1E-43		0.0148	[0.013-0.017] unit increase	Affymetrix [13304133] (imputed)	N
1208	chr9	81730340	81730341	rs191982371	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	9q21.31	NR	rs191982371-?	NR	4E-8				Illumina [7760689] (imputed)	N
1208	chr9	81739347	81739348	rs7044885	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	9q21.31	NR	rs7044885-G	0.5583	6E-12		1.0416667	[1.03-1.05]	Affymetrix, Illumina [NR] (imputed)	N
1208	chr9	81739347	81739348	rs7044885	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	9q21.31	NA	rs7044885-G	0.5532	5E-8	(Female)	1.0416667	[1.03-1.06]	Affymetrix, Illumina [NR] (imputed)	N
1208	chr9	81743115	81743116	rs34799682	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Daytime nap	386,577 European ancestry individuals	NA	9q21.31	NR	rs34799682-G	0.2019	3E-8		1.073	[1.05-1.1]	Affymetrix, Illumina [10858887] (imputed)	N
1208	chr9	81782524	81782525	rs62568194	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		AL512634.1	rs62568194-?	NR	4E-10	(male)	3.23684	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1209	chr9	81794402	81794403	rs6559463	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque score in type 2 diabetes	691 African American individuals	205 African American individuals	9q21.31	intergenic	rs6559463-?	NR	9E-6		1.834	[0.76-2.91] unit decrease	Illumina [at least 13000000] (imputed)	N
1209	chr9	81835736	81835737	rs273465	33269293	Kannambath S	2020-10-16	Open Forum Infect Dis	Genome-Wide Association Study Identifies Novel Colony Stimulating Factor 1 Locus Conferring Susceptibility to Cryptococcosis in Human Immunodeficiency Virus-Infected South Africans.	Cryptococcosis in HIV infection	319 South African ancestry cases, 399 South African ancestry controls	NA	9q21.31	LOC101927450	rs273465-?	NR	8E-6		0.9073	[NR]	Illumina [2686126] (imputed)	N
1209	chr9	81874754	81874755	rs35198810	28927378	Qian DC	2017-09-19	BMC Genomics	Genome-wide imaging association study implicates functional activity and glial homeostasis of the caudate in smoking addiction.	Caudate activity during reward	106 individuals	NA	9q21.31	NR	rs35198810-C	0.0610437	4E-6		1.3421149	[0.81-1.88] unit increase	Illumina [at least 621854] (imputed)	N
1209	chr9	81883959	81883960	rs80343610	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Skin reflectance (Melanin index)	720 South Asian ancestry individuals		9q21.31	NR	rs80343610-A	NR	2E-6		0.520464	[0.31-0.73] unit increase	Affymetrix, Illumina [at least 398118] (imputed)	N
1209	chr9	81886747	81886748	rs369019574	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	1,505 Ashkenazi Jewish founder cases, 2,553 Ashkenazi Jewish founder controls	NA	9q21.31	intergenic	rs369019574-A	NR	4E-6		1.4925373	[NR]	Illumina [up to 9792010] (imputed)	N
1209	chr9	81889357	81889358	rs2769967	18821565	Lasky-Su J	2008-12-05	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association scan of quantitative traits for attention deficit hyperactivity disorder identifies novel associations and confirms candidate gene associations.	Inattentive symptoms	930 European ancestry trios	NA	9q21.31	intergenic	rs2769967-?	NR	3E-6	(count)			Perlegen [429981]	N
1209	chr9	81898979	81898980	rs17791483	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	9q21.31	LOC101927450, TLE1	rs17791483-G	0.062588322668909	3E-12		0.102	[0.073-0.131] unit decrease	NR [5035015] (imputed)	N
1209	chr9	81905589	81905590	rs17791513	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	9q21.31	NR	rs17791513-G	0.0656	2E-12		0.0686	[0.049-0.088] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
1209	chr9	81905589	81905590	rs17791513	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	9q21.31	TLE4	rs17791513-A	0.95	3E-6		1.098901	[1.05-1.14]	Illumina [12557761] (imputed)	N
1209	chr9	81905589	81905590	rs17791513	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	9q21.31	TLE4	rs17791513-A	0.9317	3E-14		1.1	[1.08-1.13]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1209	chr9	81905589	81905590	rs17791513	24509480	Mahajan A	2014-02-09	Nat Genet	Genome-wide trans-ancestry meta-analysis provides insight into the genetic architecture of type 2 diabetes susceptibility.	Type 2 diabetes	12,171 European ancestry cases, 56,862 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls	21,491 European ancestry cases, 55,647 European ancestry controls	9q21.31	TLE4	rs17791513-A	0.93	3E-8		1.21	[1.13-1.31]	Affymetrix, Illumina [2500000] (imputed)	N
1209	chr9	81905589	81905590	rs17791513	22885922	Morris AP	2012-09-01	Nat Genet	Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes.	Type 2 diabetes	6,377 European ancestry male cases, 5,794 European ancestry female cases, 22,243 European ancestry male controls, 34,619 European ancestry female controls	12,938 European ancestry male cases, 8,553 European ancestry female cases, 904 Pakistani ancestry male cases, 274 Pakistani ancestry female cases, 30,273 European ancestry male controls, 25,374 European ancestry female controls, 2,088 Pakistani ancestry male controls, 384 Pakistani ancestry female controls	9q21.31	TLE4	rs17791513-A	NR	3E-6	(men)	1.14	[1.08-1.20]	Affymetrix, Illumina [up to 2500000] (imputed)	N
1209	chr9	81905589	81905590	rs17791513	22885922	Morris AP	2012-09-01	Nat Genet	Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes.	Type 2 diabetes	6,377 European ancestry male cases, 5,794 European ancestry female cases, 22,243 European ancestry male controls, 34,619 European ancestry female controls	12,938 European ancestry male cases, 8,553 European ancestry female cases, 904 Pakistani ancestry male cases, 274 Pakistani ancestry female cases, 30,273 European ancestry male controls, 25,374 European ancestry female controls, 2,088 Pakistani ancestry male controls, 384 Pakistani ancestry female controls	9q21.31	TLE4	rs17791513-A	0.910610002991984	3E-7		1.12	[1.07-1.17]	Affymetrix, Illumina [up to 2500000] (imputed)	N
1209	chr9	81907985	81907986	rs67269808	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	9q21.31	NR	rs67269808-G	0.0722	1E-20		0.0731	[0.058-0.088] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1209	chr9	81913180	81913184	rs147429629	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	9q21.31		rs147429629-A	NR	3E-9		0.0729	[0.049-0.097] unit decrease	Affymetrix, Illumina [25845091] (imputed)	N
1209	chr9	81915382	81915383	rs13292262	26818947	Imamura M	2016-01-28	Nat Commun	Genome-wide association studies in the Japanese population identify seven novel loci for type 2 diabetes.	Type 2 diabetes	15,463 Japanese ancestry cases, 26,183 Japanese ancestry controls	20,490 East Asian ancestry cases, 22,922 East Asian ancestry controls, 38,947 European ancestry cases, 121,903 European ancestry controls, 10,587 South Asian ancestry cases, 14,378 South Asian ancestry controls, 3,848 Mexican/Latino cases, 4,366 Mexican/Latino controls	9q21.31	TLE4	rs13292262-T	NR	6E-6	(Japanese)	1.16969	[1.09294-1.25182]	Illumina [7521072] (imputed)	N
1209	chr9	81917126	81917127	rs1328412	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	9q21.31	TLE4	rs1328412-T	0.945	6E-11		1.1	[1.07-1.13]	Affymetrix, Illumina [11800000] (imputed)	N
1210	chr9	81952127	81952128	rs13292136	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	9q21.31	TLE4	rs13292136-T	0.0646	4E-6	(EA)	0.1294	[0.074-0.184] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1210	chr9	81952127	81952128	rs13292136	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	9q21.31	TLE4	rs13292136-T	0.0646	2E-9		0.094	[0.063-0.125] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1210	chr9	81952127	81952128	rs13292136	20581827	Voight BF	2010-06-27	Nat Genet	Twelve type 2 diabetes susceptibility loci identified through large-scale association analysis.	Type 2 diabetes	8,130 European ancestry cases, 38,987 European ancestry controls	Up to 34,412 European ancestry cases, 59,925 European ancestry controls	9q21.31	CHCHD9	rs13292136-C		3E-8		1.11	[1.07-1.15]	Affymetrix, Illumina [2426886] (imputed)	N
1210	chr9	81992842	81992843	rs111471876	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	9q21.31	NR	rs111471876-?	NR	8E-7		4.937	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1210	chr9	82039361	82039362	rs2378383	19714205	Hancock DB	2009-08-28	PLoS Genet	Genome-wide association study implicates chromosome 9q21.31 as a susceptibility locus for asthma in mexican children.	Asthma (childhood onset)	492 Mexican ancestry trios	177 Mexican ancestry trios	9q21.31	TLE4, CHCHD9	rs2378383-?	0.78	7E-7		1.64	[1.32-2.04]	Illumina [520767]	N
1210	chr9	82042490	82042491	rs12554999	24823311	Guan W	2014-05-13	Circ Cardiovasc Genet	Genome-wide association study of plasma N6 polyunsaturated fatty acids within the cohorts for heart and aging research in genomic epidemiology consortium.	Plasma omega-6 polyunsaturated fatty acid levels (gamma-linolenic acid)	8,631 European ancestry individuals	NA	9q21.31	TLE4	rs12554999-A	0.05	2E-6		0.01	[NR] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1210	chr9	82046668	82046669	rs13301693	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	9q21.31	PSAT1	rs13301693-?	NR	7E-6	(hippuric acid)	0.18381405	[0.1-0.26] unit increase	Affymetrix [at least 2500000] (imputed)	N
1211	chr9	82060527	82060528	rs11138220	25866641	Xu W	2015-03-19	Biomark Res	A genome wide association study on Newfoundland colorectal cancer patients' survival outcomes.	Survival in rectal cancer	171 European ancestry cases	NA	9q21.31	intergenic	rs11138220-?		8E-6	(disease-free survival)	2.76	[1.77-4.31]	Illumina [729737]	N
1211	chr9	82071298	82071302	rs202240845	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Strep throat	52,487 European ancestry cases, 22,017 European ancestry controls	NA	9q21.31	NR	rs202240845-?	NR	9E-6		0.0431	[0.024-0.062] unit decrease	Illumina [at least 560000] (imputed)	N
1211	chr9	82090723	82090724	rs142727307	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	9q21.31	NR	rs142727307-T	NR	1E-12		1.076	[1.05-1.10]	Affymetrix, Illumina [29235255] (imputed)	N
1211	chr9	82150263	82150264	rs11138286	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	9q21.31	NR	rs11138286-?		6E-9				NR [7428630] (imputed)	N
1211	chr9	82163312	82163313	rs11138290	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	9q21.31	NR	rs11138290-?	NR	2E-6				Affymetrix [5486770] (imputed)	N
1211	chr9	82164903	82164904	rs12378818	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	9q21.31		rs12378818-T	0.15	3E-19		8.96	z score increase	Affymetrix [9061022] (imputed)	N
1211	chr9	82177080	82177081	rs7018813	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	9q21.31		rs7018813-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1212	chr9	82185371	82185372	rs946806	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	9q21.31		rs946806-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1212	chr9	82187094	82187095	rs2807303	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	9q21.31		rs2807303-G	0.654	2E-10				Affymetrix [10369434] (imputed)	N
1212	chr9	82187094	82187095	rs2807303	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	9q21.31	TLE4	rs2807303-A	0.346025	6E-22		0.022472253	[0.018-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1212	chr9	82187094	82187095	rs2807303	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q21.31	NR	rs2807303-A	0.34953	3E-24				Affymetrix, Illumina [23472807] (imputed)	N
1212	chr9	82187094	82187095	rs2807303	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	9q21.31	NR	rs2807303-A	0.346234	3E-27		0.021641	[0.018-0.026] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1212	chr9	82193746	82193746	rs11419323	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	9q21.31		rs11419323-AT	NR	8E-18		0.022	[0.017-0.027] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
1212	chr9	82200116	82200117	rs2791569	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	9q21.31		rs2791569-A	0.636	3E-10				Affymetrix [10369434] (imputed)	N
1212	chr9	82213941	82213942	rs184488658	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	9q21.31	TLE4	rs184488658-T	0.00192099999999995	3E-15		0.2088312	[0.16-0.26] unit decrease	Affymetrix [93095623] (imputed)	N
1212	chr9	82213941	82213942	rs184488658	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	9q21.31	TLE4	rs184488658-T	0.00192199999999998	3E-14		0.2008327	[0.15-0.25] unit decrease	Affymetrix [93095623] (imputed)	N
1212	chr9	82215911	82215912	rs2807312	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	9q21.31		rs2807312-T	0.13	7E-9		5.78	z score increase	Affymetrix [9061022] (imputed)	N
1212	chr9	82215911	82215912	rs2807312	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	9q21.31	NR	rs2807312-T	0.1027	1E-8				NR [9056863] (imputed)	N
1212	chr9	82219464	82219465	rs145598309	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q21.31	NR	rs145598309-A	0.998072	2E-13				Affymetrix, Illumina [24588908] (imputed)	N
1212	chr9	82229980	82229981	rs11138311	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	9q21.31	NR	rs11138311-T	0.900959	2E-8		0.0186257	[0.012-0.025] unit increase	NR [NR]	N
1212	chr9	82234394	82234395	rs7029276	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	9q21.31	NR	rs7029276-T	0.0845587	3E-13		0.0406402	[0.03-0.052] unit increase	NR [19129689] (imputed)	N
1212	chr9	82237780	82237781	rs191751273	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	9q21.31		rs191751273-G	NR	5E-14		0.2029	[0.15-0.26] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1212	chr9	82237780	82237781	rs191751273	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	9q21.31	NR	rs191751273-T	0.99815	5E-16		0.192426	[0.15-0.24] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1212	chr9	82240967	82240968	rs11138313	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	9q21.31		rs11138313-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1212	chr9	82240967	82240968	rs11138313	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	9q21.31	NA	rs11138313-A	0.8966	6E-10		0.0176	[0.012-0.023] unit increase	NR [~ 27400000] (imputed)	N
1212	chr9	82246350	82246351	rs9886703	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	9q21.31	NR	rs9886703-T	NR	9E-10		0.0195	[0.013-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
1212	chr9	82246350	82246351	rs9886703	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	9q21.31	Intergenic	rs9886703-A	0.166	2E-9	(MTAG)	0.0132	[0.0089-0.0175] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1212	chr9	82246350	82246351	rs9886703	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	9q21.31		rs9886703-A	0.1671	4E-13		0.0136	[0.0099-0.0173] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1212	chr9	82246350	82246351	rs9886703	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	9q21.31	Intergenic	rs9886703-A	0.1671	9E-14	(MTAG)	0.0131	[0.0096-0.0166] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1212	chr9	82251358	82251359	rs4436200	34737425	Mansour Aly D	2021-11-04	Nat Genet	Genome-wide association analyses highlight etiological differences underlying newly defined subtypes of diabetes.	Severe insulin-resistant type 2 diabetes	1,130 Scandinavian ancestry cases, 2,744 Scandinavian ancestry controls	NA	9q21.31	TLE4	rs4436200-C	0.129024	8E-6		0.695	[0.592 - 0.816]	Illumina [5397362] (imputed)	N
1212	chr9	82279347	82279348	rs72734311	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Bipolar disorder x sex interaction	19,924 European ancestry cases, 30,547 European ancestry controls	NA	9q21.31	TLE4	rs72734311-A	0.0784	8E-6		0.265	[0.15-0.38] unit decrease	NR [NR] (imputed)	N
1212	chr9	82279347	82279348	rs72734311	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Bipolar disorder	11,897 European ancestry female cases, 15,538 European ancestry female controls, 8,027 European ancestry male cases, 15,009 European ancestry male controls	NA	9q21.31	TLE4	rs72734311-A	0.0784	3E-6	(male)	0.2106	[0.12-0.3] unit increase	NR [NR] (imputed)	N
1212	chr9	82279766	82279767	rs13294683	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	9q21.31		rs13294683-T	NR	2E-11		0.028	[0.02-0.036] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
1212	chr9	82279766	82279767	rs13294683	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	9q21.31		rs13294683-T	NR	9E-18		0.0327	[0.025-0.04] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
1212	chr9	82294363	82294364	rs11138325	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting insulin	151,013 European ancestry individuals	NA	9q21.31	TLE4	rs11138325-T	0.5797	5E-8		0.0118	[0.0075-0.0161] unit decrease	Affymetrix, Illumina [32635793] (imputed)	N
1212	chr9	82297989	82297990	rs10867411	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	9q21.31	TLE4	rs10867411-G	0.639	2E-13		0.02762113	[0.02-0.035] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1212	chr9	82310897	82310898	rs914715	21254220	Jiang Y	2011-02-01	Genet Epidemiol	Propensity score-based nonparametric test revealing genetic variants underlying bipolar disorder.	Bipolar disorder	1,868 European ancestry cases, 2,938 European ancestry controls	NA	9q21.31	NR	rs914715-?	NR	1E-6	(dominant)			Affymetrix [NR]	N
1213	chr9	82318382	82318383	rs138257199	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	9q21.31	NR	rs138257199-C	0.0246697	1E-8		0.057791	[0.038-0.078] unit decrease	NR [19129689] (imputed)	N
1213	chr9	82324151	82324152	rs10867416	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	9q21.31	TLE4	rs10867416-C	0.656083	5E-9		0.01365066	[0.0091-0.0182] unit increase	Affymetrix [93095623] (imputed)	N
1213	chr9	82324151	82324152	rs10867416	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	9q21.31	TLE4	rs10867416-C	0.656079	5E-13		0.016871812	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1213	chr9	82325674	82325675	rs6559493	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	9q21.31		rs6559493-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1213	chr9	82340764	82340765	rs11545434	29346644	Yan Q	2018-01-15	Hum Mol Genet	Genome-wide Analysis of Disease Progression in Age-related Macular Degeneration.	Disease progression in age-related macular degeneration (adjusted for baseline)	1,105 progressed eyes and 3,912 non-progressed eyes from 2,721 European ancestry individuals	NA	9q21.31	TLE4	rs11545434-A	0.06	8E-6		1.65		Illumina [8974355] (imputed)	N
1213	chr9	82345880	82345881	rs2151145	19448619	Stolk L	2009-05-15	Nat Genet	Loci at chromosomes 13, 19 and 20 influence age at natural menopause.	Menopause (age at onset)	2,979 European ancestry female individuals	2,560 European ancestry female individuals	9q21.31	NR	rs2151145-?	NR	1E-7		0.41	[0.26-0.56] years increase	Illumina [315418]	N
1213	chr9	82404105	82404106	rs188470542	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	9q21.31	Intergenic	rs188470542-T	1.0	7E-7	(AA)	0.772	unit increase	Illumina [NR] (imputed)	N
1213	chr9	82423013	82423014	rs12684403	31993563	Ware EB	2019-11-22	Mayo Clin Proc Innov Qual Outcomes	Genome-wide Association Study of 24-Hour Urinary Excretion of Calcium, Magnesium, and Uric Acid.	Urinary calcium excretion	6,462 European ancestry individuals	NA	9q21.31	intergenic	rs12684403-T	0.43	7E-6		6.59	NR mg increase	NR [NR] (imputed)	N
1213	chr9	82430417	82430418	rs7039819	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	9q21.31		rs7039819-G	0.427	5E-10		0.013	[0.0091-0.0169] unit increase	Affymetrix [up to 90000000] (imputed)	N
1213	chr9	82433797	82433798	rs7025335	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	9q21.31	RP11-403N16.5	rs7025335-G	0.4433	4E-9		0.012019797	[0.008-0.016] unit increase	Affymetrix [up to 18485882] (imputed)	N
1213	chr9	82438584	82438585	rs4877152	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	9q21.31		rs4877152-T	0.558	3E-11	(conditional-joint)	0.0094	[0.0067-0.0121] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1213	chr9	82439057	82439058	rs4273932	28322283	Chibnik LB	2017-03-21	Mol Psychiatry	Susceptibility to neurofibrillary tangles: role of the PTPRD locus and limited pleiotropy with other neuropathologies.	Neuritic plaque	909 European ancestry individuals	369 individuals	9q21.31		rs4273932-C	0.34	9E-6	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1213	chr9	82441485	82441486	rs7031698	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	9q21.31		rs7031698-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1213	chr9	82442730	82442731	rs4877516	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	9q21.31		rs4877516-A	0.4417	8E-13		0.0101	[0.0074-0.0128] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1213	chr9	82443097	82443098	rs10780329	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	9q21.31	Intergenic	rs10780329-T	0.4418	2E-13	(MTAG)	0.0097	[0.0072-0.0122] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1214	chr9	82447232	82447233	rs6559505	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	9q21.31		rs6559505-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1214	chr9	82490410	82490411	rs4877519	35131881	Testori A	2022-02-07	Cancer Epidemiol Biomarkers Prev	Genetic analysis in African American children supports ancestry specific neuroblastoma susceptibility.	Neuroblastoma	629 African American cases, 2,990 African American controls	NA	9q21.31		rs4877519-T	NR	5E-6		0.5081	unit increase	Illumina [8524982] (imputed)	N
1214	chr9	82495767	82495768	rs1483023	31872054	Wei L	2019-11-08	Neurol Genet	Identification of TYW3/CRYZ and FGD4 as susceptibility genes for amyotrophic lateral sclerosis.	Amyotrophic lateral sclerosis	666 Han Chinese ancestry cases, 3,988 Han Chinese ancestry controls	up to 884 Han Chinese ancestry cases, up to 5,329 Han Chinese ancestry controls	9q21.31	NR	rs1483023-?	NR	1E-6		1.2820514	NR	Illumina [456414]	N
1214	chr9	82547045	82547046	rs267585	28090653	Liu Y	2017-01-16	Clin Pharmacol Ther	Genome-Wide Study Links PNPLA3 Variant With Elevated Hepatic Transaminase After Acute Lymphoblastic Leukemia Therapy.	Alanine aminotransferase (ALT) levels after remission induction therapy in actute lymphoblastic leukemia (ALL)	up to 488 European ancestry cases, up to 111 African American cases, up to 60 Hispanic cases, up to 56 other ancestry cases	NA	9q21.31	TLE4	rs267585-T		8E-6	(EA)	1.39	[1.03-1.88]	Affymetrix, Illumina [NR] (imputed)	N
1215	chr9	82596500	82596501	rs7851008	34288885	Lin WD	2021-07-01	Eur J Endocrinol	Genetic factors of idiopathic central precocious puberty and their polygenic risk in early puberty.	Idiopathic central precocious puberty	256 Han Chinese ancestry cases, 118 Han Chinese ancestry controls	65 Han Chinese ancestry cases, 30 Han Chinese ancestry controls	9q21.31		rs7851008-G	NR	3E-6		2.0	[1.5-2.68]	Affymetrix [NR] (imputed)	N
1215	chr9	82605700	82605701	rs2149803	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-1-beta levels	3,309 Finnish ancestry individuals	NA	9q21.31	NR	rs2149803-C	NR	1E-6		0.5297	[0.31-0.75] SD units increase	NR [10700000] (imputed)	N
1215	chr9	82622501	82622502	rs11138453	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Inferior parietal cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	9q21.31	LOC101927477	rs11138453-?		7E-7				Illumina [4322238] (imputed)	N
1215	chr9	82624052	82624052	rs200847279	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Bacterial meningitis	842 European ancestry cases, 82,778 European ancestry controls	NA	9q21.31	NR	rs200847279-?	NR	3E-6		1.0659	[0.55-1.58] unit decrease	Illumina [at least 560000] (imputed)	N
1215	chr9	82632006	82632007	rs4877531	34224794	Wang K	2021-07-02	Prog Neuropsychopharmacol Biol Psychiatry	Genome-wide association study identified INSC gene associated with Trail Making Test Part A and Alzheimer's disease related cognitive phenotypes.	Disability level (impaired activities of daily living)	684 European ancestry individuals, 17 Hispanic individuals, 36 African American individuals, 18 individuals	NA	9q21.31		rs4877531-T	NR	7E-6		1.839	[1.04-2.64] unit increase	NR [534934]	N
1215	chr9	82637488	82637489	rs76602376	34074324	Wan JY	2021-06-01	Diabetol Metab Syndr	Genome-wide association analysis of metabolic syndrome quantitative traits in the GENNID multiethnic family study.	Fasting glucose	281 African American individuals from 73 families, 516 European ancestry individuals from 75 families, 125 Japanese American individuals from 15 families, 598 Mexican American individuals from 96 families	NA	9q21.31	DQ573195, DQ591664	rs76602376-G	0.02	7E-7	(EA)	0.96	[0.59-1.33] unit increase	Illumina [up to 13042663] (imputed)	N
1216	chr9	82748140	82748141	rs6559536	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-1-beta levels	3,309 Finnish ancestry individuals	NA	9q21.31	NR	rs6559536-C	NR	1E-7		0.5736	[0.35-0.79] SD units increase	NR [10700000] (imputed)	N
1216	chr9	82759462	82759463	rs10114675	34224794	Wang K	2021-07-02	Prog Neuropsychopharmacol Biol Psychiatry	Genome-wide association study identified INSC gene associated with Trail Making Test Part A and Alzheimer's disease related cognitive phenotypes.	Disability level (impaired activities of daily living)	684 European ancestry individuals, 17 Hispanic individuals, 36 African American individuals, 18 individuals	NA	9q21.31		rs10114675-A	0.13	1E-6		2.344	[1.4-3.29] unit increase	NR [534934]	N
1216	chr9	82788835	82788836	rs11787922	32635940	Nudel R	2020-07-07	BMC Neurosci	Quantitative genome-wide association analyses of receptive language in the Danish High Risk and Resilience Study.	Receptive language ability	400 European ancestry children	NA	9q21.31	intergenic	rs11787922-T	NR	9E-6		9.46	NR unit decrease	Illumina [299604]	N
1216	chr9	82788835	82788836	rs11787922	32635940	Nudel R	2020-07-07	BMC Neurosci	Quantitative genome-wide association analyses of receptive language in the Danish High Risk and Resilience Study.	Parent of origin effect on receptive language ability (paternal)	400 European ancestry children	NA	9q21.31	intergenic	rs11787922-T	NR	1E-8		23.05	NR unit decrease	Illumina [up to 299604]	N
1216	chr9	82807330	82807331	rs182988086	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Bacterial meningitis	842 European ancestry cases, 82,778 European ancestry controls	NA	9q21.31	NR	rs182988086-?	NR	9E-6		7.0918	[0.55-13.64] unit decrease	Illumina [at least 560000] (imputed)	N
1216	chr9	82807502	82807503	rs12554086	20031603	Marroni F	2009-08-01	Circ Cardiovasc Genet	A genome-wide association scan of RR and QT interval duration in 3 European genetically isolated populations: the EUROSPAN project.	RR interval (heart rate)	2,325 European ancestry individuals	NA	9q21.31	intergenic	rs12554086-A	0.39	4E-7		0.16	[0.10-0.22] unit decrease	Illumina [~ 318327]	N
1217	chr9	82853626	82853627	rs72740597	29559693	Zengini E	2018-03-20	Nat Genet	Genome-wide analyses using UK Biobank data provide insights into the genetic architecture of osteoarthritis.	Osteoarthritis (self-reported)	12,658 European ancestry cases, 50,898 European ancestry controls		9q21.31	NR	rs72740597-A	0.9143082	8E-6		1.1174184	[1.18-1.12]	Affymetrix [16499239] (imputed)	N
1217	chr9	82881501	82881502	rs141211125	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-1-beta levels	3,309 Finnish ancestry individuals	NA	9q21.31	NR	rs141211125-T	NR	3E-7		0.5646	[0.34-0.79] SD units increase	NR [10700000] (imputed)	N
1217	chr9	82945952	82945953	rs72742702	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Lateral ventricle volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	9q21.31	NR	rs72742702-?		7E-6				Illumina [4322238] (imputed)	N
1218	chr9	83055748	83055749	rs183059183	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-1-beta levels	3,309 Finnish ancestry individuals	NA	9q21.31	NR	rs183059183-C	NR	2E-6		0.5279	[0.31-0.74] SD units decrease	NR [10700000] (imputed)	N
1218	chr9	83063669	83063670	rs11138664	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	9q21.31	Intergenic	rs11138664-T	0.0776	2E-9	(MTAG)	0.0146	[0.0099-0.0193] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1218	chr9	83095424	83095425	rs12338307	29860282	Scelsi MA	2018-05-30	Brain	Genetic study of multimodal imaging Alzheimer's disease progression score implicates novel loci.	Hippocampal volume	926 European ancestry individuals	NA	9q21.31	Intergenic	rs12338307-?		4E-6	(corrected for APOE4 status)	0.13	[NR] unit decrease	Illumina [5137218] (imputed)	N
1219	chr9	83121544	83121545	rs11138705	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure in major depressive disorder-negative individuals	10,701 European ancestry cases, 39,677 European ancestry controls	NA	9q21.31	NR	rs11138705-C	0.748896	2E-6		1.143	[1.09-1.2]	Affymetrix [7791636] (imputed)	N
1219	chr9	83184063	83184064	rs7034624	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Myringotomy	4,138 European ancestry cases, 85,089 European ancestry controls	NA	9q21.31	NR	rs7034624-?	NR	9E-6		0.1094	[0.061-0.158] unit increase	Illumina [at least 560000] (imputed)	N
1219	chr9	83187236	83187237	rs139079409	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-1-beta levels	3,309 Finnish ancestry individuals	NA	9q21.31	NR	rs139079409-G	NR	2E-6		0.5408	[0.32-0.76] SD units increase	NR [10700000] (imputed)	N
1219	chr9	83196096	83196097	rs12378543	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	9q21.31	TLE4	rs12378543-C	0.6159	5E-9		1.0235735		Affymetrix [11880941] (imputed)	N
1219	chr9	83201024	83201025	rs7858961	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	9q21.31	Intergenic	rs7858961-A	0.2001	2E-17	(MTAG)	0.0175	[0.013-0.022] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1219	chr9	83201024	83201025	rs7858961	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	9q21.31	Intergenic	rs7858961-A	0.2043	2E-11	(MTAG)	0.019	[0.014-0.024] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1219	chr9	83206339	83206340	rs6559561	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	9q21.31	Intergenic	rs6559561-A	0.1988	7E-16	(MTAG)	0.0181	[0.014-0.022] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1219	chr9	83215728	83215729	rs2149345	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	9q21.31	Intergenic	rs2149345-T	0.1999	7E-10		0.0175	[0.012-0.023] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1219	chr9	83216933	83216934	rs721838	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	9q21.31	Intergenic	rs721838-T	0.1996	3E-12		0.017	[0.012-0.022] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1219	chr9	83216968	83216969	rs721839	32121467	Adewuyi EO	2020-02-29	Genes (Basel)	Shared Molecular Genetic Mechanisms Underlie Endometriosis and Migraine Comorbidity.	Endometriosis or migraine	17,054 European and Japanese ancestry endometriosis cases, 29,208 European ancestry migraine cases, 191,858 European and Japanese ancestry controls, 172,931 European ancestry controls	NA	9q21.31	NR	rs721839-C	NR	5E-6	(random effect)	1.0416667	NR	NR [6904914] (imputed)	N
1219	chr9	83217376	83217377	rs1410542	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	9q21.31	NR	rs1410542-?	NR	7E-8		5.401	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1219	chr9	83229027	83229028	rs138731641	31095341	Kerns SL	2019-05-16	J Natl Cancer Inst	Radiogenomics Consortium Genome-Wide Association Study Meta-analysis of Late Toxicity after Prostate Cancer Radiotherapy.	Toxicity response to radiotherapy in prostate cancer (hematuria) (time to event)	3,619 European ancestry individuals	538 Japanese ancestry individuals	9q21.31	NR	rs138731641-?	0.04	5E-7	(EA)	5.46	[2.82-10.6]	Affymetrix, Illumina [~ 6000000] (imputed)	N
1220	chr9	83231510	83231511	rs7035315	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	9q21.31		rs7035315-A	0.6292	6E-10		0.009	[0.0061-0.0119] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1220	chr9	83231510	83231511	rs7035315	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	9q21.31	Intergenic	rs7035315-A	0.6292	8E-13	(MTAG)	0.0097	[0.007-0.0124] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1220	chr9	83265248	83265249	rs17266958	24839885	Benke KS	2014-02-19	J Am Acad Child Adolesc Psychiatry	A genome-wide association meta-analysis of preschool internalizing problems.	Preschool internalizing problems	3,121 European ancestry individuals, 1,475 children from 1,031 families	NA	9q21.31	NR	rs17266958-T	0.0756	4E-6		0.2	[0.11-0.28] unit decrease	Affymetrix, Illumina [2403520] (imputed)	N
1220	chr9	83271418	83271419	rs199950405	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	9q21.31	NR	rs199950405-C	0.258883	4E-8		0.0194992	[0.012-0.027] unit increase	Affymetrix [16577313] (imputed)	N
1220	chr9	83281890	83281891	rs56145934	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Intake of total sugars	174,424 European ancestry individuals	NA	9q21.31	AL353707.1	rs56145934-G	0.83	6E-6		0.99	[0.56-1.42] g/day increase	Affymetrix [10353649] (imputed)	N
1220	chr9	83282270	83282271	rs72749479	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Time-dependent creatinine clearance change response to tenofovir treatment in HIV infection (time and treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	9q21.31	NR	rs72749479-?		7E-7	(African)			Illumina [~ 5140000] (imputed)	N
1220	chr9	83282401	83282402	rs11534296	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	9q21.31		rs11534296-?	NR	3E-18				NR [~ 8900000] (imputed)	N
1220	chr9	83285173	83285174	rs72749483	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Time-dependent creatinine clearance change response to tenofovir treatment in HIV infection (time and treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	9q21.31	NR	rs72749483-?		7E-7	(African)			Illumina [~ 5140000] (imputed)	N
1221	chr9	83374136	83374137	rs4097679	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9q21.31		rs4097679-?	NR	6E-17				NR [~ 8900000] (imputed)	N
1221	chr9	83377983	83377984	rs191325450	30514930	Mukherjee S	2018-12-04	Mol Psychiatry	Genetic data and cognitively defined late-onset Alzheimer's disease subgroups.	Alzheimer's disease with multiple cognitive domain impairments	Up to 248 European ancestry cases, 3,447 European ancestry controls	NA	9q21.31	NR	rs191325450-G	0.09	2E-6		2.3255813	[1.97-2.68]	NR [up to 6398204] (imputed)	N
1221	chr9	83391294	83391295	rs188550518	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-1-beta levels	3,309 Finnish ancestry individuals	NA	9q21.31	NR	rs188550518-G	NR	2E-6		0.5272	[0.31-0.75] SD units decrease	NR [10700000] (imputed)	N
1221	chr9	83434437	83434438	rs4877620	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	9q21.31	NR	rs4877620-?	NR	6E-6		4.529	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1221	chr9	83452405	83452406	rs1324167	29860282	Scelsi MA	2018-05-30	Brain	Genetic study of multimodal imaging Alzheimer's disease progression score implicates novel loci.	Hippocampal volume	926 European ancestry individuals	NA	9q21.31	Intergenic	rs1324167-?		3E-6	(corrected for APOE4 status)	0.13	[NR] unit decrease	Illumina [5137218] (imputed)	N
1221	chr9	83470922	83470923	rs2378518	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	9q21.31	NR	rs2378518-A	0.322742	3E-8		0.0189137	[0.012-0.026] unit decrease	NR [19129689] (imputed)	N
1221	chr9	83475430	83475430	rs533841431	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-hip ratio	1,254 whole genome sequenced European ancestry individuals, 3,071 whole genome sequenced individuals, 29,723 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,053 Mylopotamos (founder/genetic isolate) individuals, 879 Pomak (founder/genetic isolate) individuals	206,053 European ancestry individuals	9q21.31	RP11-289F5.1	rs533841431-T	0.998	3E-6		0.7954	[0.46-1.13] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1221	chr9	83480391	83480392	rs76696867	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	9q21.31	NR	rs76696867-A	0.0728	6E-9	(Superior Frontal)	43.808533	[29.07-58.54] unit decrease	Affymetrix, Illumina [NR]	N
1221	chr9	83488863	83488864	rs11138885	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	9q21.31	NR	rs11138885-C	0.0810999	5E-11		0.0377961	[0.027-0.049] unit increase	NR [19129689] (imputed)	N
1222	chr9	83503892	83503893	rs10780467	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	9q21.31	RP11-289F5.1	rs10780467-T	0.4237	5E-9		0.011969681	[0.008-0.016] unit decrease	Affymetrix [up to 18485882] (imputed)	N
1222	chr9	83511564	83511565	rs117561879	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	9q21.31	NR	rs117561879-?	NR	2E-8				Illumina [7760689] (imputed)	N
1222	chr9	83518214	83518215	rs139638356	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		9q21.31	Intergenic	rs139638356-T	0.996	2E-6	(liability model)	0.83	[0.48-1.18] unit decrease	NR [19725427] (imputed)	N
1222	chr9	83555252	83555253	rs116946228	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Cardio-cerebrovascular disease in diabetes mellitus	497 Korean ancestry cases, 4,815 Korean ancestry controls	NA	9q21.31		rs116946228-G	0.01331	5E-6		2.638	[1.74-4.001]	Affymetrix [7975321] (imputed)	N
1222	chr9	83575031	83575032	rs9695255	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	9q21.31		rs9695255-T	0.23	1E-27		10.88	z score increase	Affymetrix [9061022] (imputed)	N
1222	chr9	83575031	83575032	rs9695255	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	9q21.31		rs9695255-T	0.23	2E-16		8.22	z score increase	Affymetrix [9061022] (imputed)	N
1222	chr9	83575031	83575032	rs9695255	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	9q21.31	NR	rs9695255-T	0.2416	1E-17				NR [9056863] (imputed)	N
1223	chr9	83629058	83629059	rs454911	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric bone mineral content (spine)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	9q21.31	NR	rs454911-G	0.3	8E-6	(Males)	0.215483	[0.12-0.31] unit decrease	Illumina [~ 6600000] (imputed)	N
1223	chr9	83649786	83649787	rs9410566	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 3)	19,670 European ancestry individuals	NA	9q21.31		rs9410566-?	NR	8E-9				NR [9705931] (imputed)	N
1223	chr9	83677991	83677992	rs7859844	33239672	Laisk T	2020-11-25	Nat Commun	The genetic architecture of sporadic and multiple consecutive miscarriage.	Multiple consecutive miscarriage	750 European ancestry cases, 150,215 European ancestry controls	NA	9q21.31	NR	rs7859844-A	0.06	1E-8		1.68	[1.42-1.99]	Affymetrix, Illumina [8956145] (imputed)	N
1223	chr9	83694581	83694582	rs144573434	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		9q21.31	Intergenic	rs144573434-T	0.997	5E-7	(liability model)	1.14	[0.69-1.59] unit decrease	NR [19725427] (imputed)	N
1223	chr9	83702683	83702684	rs75108857	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung adenocarcinoma	11,273 European ancestry cases,  55,483 European ancestry controls	NA	9q21.31	LINC01507, TLE1	rs75108857-A	0.019808378	6E-6		1.3359972	[1.178752674-1.514218162]	Illumina [10439017] (imputed)	N
1223	chr9	83743392	83743393	rs188572687	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-1-beta levels	3,309 Finnish ancestry individuals	NA	9q21.31	NR	rs188572687-G	NR	3E-6		0.4995	[0.31-0.69] SD units decrease	NR [10700000] (imputed)	N
1224	chr9	83755207	83755208	rs62579839	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	9q21.31		rs62579839-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1224	chr9	83822858	83822859	rs192868041	31194736	Tiensuu H	2019-06-13	PLoS Genet	Risk of spontaneous preterm birth and fetal growth associates with fetal SLIT2.	Moderate-to-late spontaneous preterm birth	75 Finnish ancestry infant cases, 419 Finnish ancestry infant controls	NA	9q21.31	LOC107987084, TLE1	rs192868041-?	NR	4E-6		4.44		Illumina [6778521] (imputed)	N
1225	chr9	83929605	83929606	rs60140289	29538362	Jilling T	2018-03-14	Pediatr Res	Surgical necrotizing enterocolitis in extremely premature neonates is associated with genetic variations in an intergenic region of chromosome eight.	Surgical necrotising enterocolitis in extremely premature birth	20 African American cases, 6 Hispanic Caucasian cases, 4 European ancestry cases,  283 African American controls, 130 Hispanic Caucasian controls, 133 European ancestry controls,	NA	9q21.31	NR	rs60140289-?	NR	9E-6				Illumina [8270200] (imputed)	N
1225	chr9	83966479	83966480	rs11139167	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	9q21.31	NR	rs11139167-A	0.203	7E-6	(IFNalpha_CXCL10_of_CD56brightCD16n)			Illumina [5084123] (imputed)	N
1225	chr9	84015036	84015037	rs10867752	19668339	Potkin SG	2009-08-07	PLoS One	Hippocampal atrophy as a quantitative trait in a genome-wide association study identifying novel susceptibility genes for Alzheimer's disease.	Hippocampal atrophy	162 European ancestry cases, 192 European ancestry controls, 7 African American cases, 14 African American controls, 1 Asian ancestry cases, 3 Asian ancestry controls, 2 cases	NA	9q21.31	RP11-232A1.1	rs10867752-?	NR	3E-6				Illumina [516645]	N
1226	chr9	84034174	84034175	rs7032482	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	9q21.31	intergenic	rs7032482-?	NR	4E-6		0.196	[0.12-0.27] unit decrease	Illumina [at least 13000000] (imputed)	N
1226	chr9	84053685	84053686	rs7864133	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	9q21.31	Intergenic	rs7864133-A	0.753	4E-6	(AA)	0.132	NR unit decrease	Illumina [NR] (imputed)	N
1226	chr9	84054962	84054963	rs76553430	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip and palate	121 Asian ancestry cases, 159 European ancestry cases, 285 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	9q21.31	NR	rs76553430-?	NR	9E-6		2.11	[1.85-2.41]	Illumina [539000] (imputed)	N
1227	chr9	84163279	84163280	rs72745575	30898391	Lawrenson K	2019-03-19	Gynecol Oncol	Genome-wide association studies identify susceptibility loci for epithelial ovarian cancer in east Asian women.	Epithelial ovarian cancer	3,238 East Asian ancestry cases, 4,083 East Asian ancestry controls	NA	9q21.32		rs72745575-?	NR	2E-6	(lmp)	2.07		Illumina [11595112] (imputed)	N
1227	chr9	84186733	84186734	rs2777768	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	9q21.32	NA	rs2777768-A	0.7228	6E-10		0.0119	[0.0082-0.0156] unit increase	NR [~ 27400000] (imputed)	N
1227	chr9	84199806	84199807	rs2796457	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	9q21.32	TLE1	rs2796457-T	0.272563	7E-12		0.0178929	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1227	chr9	84199806	84199807	rs2796457	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	9q21.32	TLE1	rs2796457-T	0.272583	1E-11		0.01687685	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1227	chr9	84208346	84208347	rs2777774	33235445	Lee YJ	2020-11-17	Int J Chron Obstruct Pulmon Dis	A Genome-Wide Association Study in Early COPD: Identification of One Major Susceptibility Loci.	Early chronic obstructive pulmonary disease in never smokers	38 Korean ancestry cases, 1,778 Korean ancestry controls	NA	9q21.32	TL1	rs2777774-?	NR	4E-6	(PS matching analysis)	4.3	NR	Affymetrix [345072]	N
1227	chr9	84213159	84213160	rs2777777	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue adjusted for BMI	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	9q21.32	TLE1	rs2777777-C	0.55	9E-6	(Women)			Affymetrix, Illumina [2500000] (imputed)	N
1227	chr9	84222617	84222618	rs815847	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral fat	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	9q21.32	TLE1	rs815847-G	0.36	3E-6	(women)			Affymetrix, Illumina [2500000] (imputed)	N
1227	chr9	84227157	84227158	rs870713	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9q21.32		rs870713-?	NR	1E-16				NR [~ 8900000] (imputed)	N
1227	chr9	84233763	84233764	rs7029058	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	9q21.32	TLE1	rs7029058-T	0.3625	2E-10		0.0126	[0.0087-0.0165] unit decrease	Affymetrix [18391927] (imputed)	N
1227	chr9	84266470	84266471	rs11139357	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	9q21.32	NR	rs11139357-?	NR	8E-7				Affymetrix [NR]	N
1227	chr9	84273249	84273250	rs1159642	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric bone mineral density (spine)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	9q21.32	NR	rs1159642-T	0.067	2E-6	(Females)	0.492695	[0.29-0.69] unit decrease	Illumina [~ 6600000] (imputed)	N
1227	chr9	84276680	84276681	rs559551058	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9q21.32	NR	rs559551058-C	0.01045	7E-9	(NUTF2)	0.03038	NR unit increase	Illumina [1671387] (imputed)	N
1228	chr9	84292306	84292307	rs2796443	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Endometrial cancer	2,037 European ancestry cases, 410,350 European ancestry controls	NA	9q21.32		rs2796443-T	0.384686	9E-8		1.1888	NR	Affymetrix [7846216] (imputed)	N
1228	chr9	84293295	84293295	rs35206989	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	9q21.32	NR	rs35206989-A	0.204416	1E-8		0.00569886	[0.0036-0.0078] unit increase	Affymetrix [16582909] (imputed)	N
1228	chr9	84293295	84293295	rs35206989	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	9q21.32	NR	rs35206989-A	0.204416	5E-10		0.00677	[0.0045-0.0091] unit increase	Affymetrix [16582965] (imputed)	N
1228	chr9	84293452	84293453	rs2506125	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	9q21.32		rs2506125-A	0.609935781	3E-14		0.07866137	[0.058-0.099] unit decrease	Illumina [13134967] (imputed)	N
1228	chr9	84293452	84293453	rs2506125	26818947	Imamura M	2016-01-28	Nat Commun	Genome-wide association studies in the Japanese population identify seven novel loci for type 2 diabetes.	Type 2 diabetes	15,463 Japanese ancestry cases, 26,183 Japanese ancestry controls	20,490 East Asian ancestry cases, 22,922 East Asian ancestry controls, 38,947 European ancestry cases, 121,903 European ancestry controls, 10,587 South Asian ancestry cases, 14,378 South Asian ancestry controls, 3,848 Mexican/Latino cases, 4,366 Mexican/Latino controls	9q21.32	TLE1	rs2506125-G	NR	3E-6	(Japanese)	1.0772983	[1.04424682653389-1.1113951343121]	Illumina [7521072] (imputed)	N
1228	chr9	84296356	84296357	rs7024675	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	9q21.32		rs7024675-?	NR	7E-14				NR [~ 8900000] (imputed)	N
1228	chr9	84306695	84306696	rs72749016	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	9q21.32	NR	rs72749016-G	0.080948	2E-10		0.021916	[0.015-0.029] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1228	chr9	84308947	84308948	rs2796441	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	9q21.32		rs2796441-A	NR	1E-26		0.0679	[0.056-0.08] unit decrease	Affymetrix, Illumina [25845091] (imputed)	N
1228	chr9	84308947	84308948	rs2796441	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	9q21.32		rs2796441-A	NR	5E-11		0.0135	[0.0096-0.0174] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
1228	chr9	84308947	84308948	rs2796441	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	46,511 Asian ancestry cases, 169,776 Asian ancestry controls	NA	9q21.32	NR	rs2796441-G	0.378	2E-19		0.0794	[0.062-0.097] unit increase	Affymetrix, Illumina [1077427] (imputed)	N
1228	chr9	84308947	84308948	rs2796441	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	9q21.32	NR	rs2796441-G	0.5906	1E-36		0.0589	[0.05-0.068] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1228	chr9	84308947	84308948	rs2796441	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	9q21.32	NR	rs2796441-G	0.5596	3E-55		0.0609	[0.053-0.069] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1228	chr9	84308947	84308948	rs2796441	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	9q21.32		rs2796441-A	0.624604208	3E-19		0.92672306	[0.911471445-0.942229857]	Illumina [8919992] (imputed)	N
1228	chr9	84308947	84308948	rs2796441	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	9q21.32	TLE1	rs2796441-G	0.39	1E-28		1.08	[1.06-1.09]	Affymetrix, Illumina [11800000] (imputed)	N
1228	chr9	84308947	84308948	rs2796441	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	9q21.32	TLE1	rs2796441-G	0.38	3E-19		1.08	1.06-1.10	Illumina [12557761] (imputed)	N
1228	chr9	84308947	84308948	rs2796441	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Type 2 diabetes	approximately 459,000 European ancestry individuals	NA	9q21.32		rs2796441-?	NR	8E-16				NR [~ 8900000] (imputed)	N
1228	chr9	84308947	84308948	rs2796441	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	9q21.32	TLE1	rs2796441-G	0.5924	4E-24		1.07	[1.05-1.08]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1228	chr9	84308947	84308948	rs2796441	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	9q21.32	LOC101927502, TLE1	rs2796441-A	0.416458049639807	2E-22		0.0715	[0.057-0.086] unit decrease	NR [5035015] (imputed)	N
1228	chr9	84308947	84308948	rs2796441	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	9q21.32	TLE1	rs2796441-A	0.4155	8E-10	(EA)	0.064	[0.044-0.084] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1228	chr9	84308947	84308948	rs2796441	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	9q21.32	TLE1	rs2796441-A	0.4155	2E-14		0.057	[0.043-0.071] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1228	chr9	84308947	84308948	rs2796441	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	9q21.32	NR	rs2796441-G	NR	2E-7		1.0638298	[NR]	Illumina [7158791] (imputed)	N
1228	chr9	84308947	84308948	rs2796441	24509480	Mahajan A	2014-02-09	Nat Genet	Genome-wide trans-ancestry meta-analysis provides insight into the genetic architecture of type 2 diabetes susceptibility.	Type 2 diabetes	12,171 European ancestry cases, 56,862 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls	21,491 European ancestry cases, 55,647 European ancestry controls	9q21.32	TLE1	rs2796441-G	0.63	2E-6		1.07	[1.03-1.12]	Affymetrix, Illumina [2500000] (imputed)	N
1228	chr9	84308947	84308948	rs2796441	22885922	Morris AP	2012-09-01	Nat Genet	Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes.	Type 2 diabetes	6,377 European ancestry male cases, 5,794 European ancestry female cases, 22,243 European ancestry male controls, 34,619 European ancestry female controls	12,938 European ancestry male cases, 8,553 European ancestry female cases, 904 Pakistani ancestry male cases, 274 Pakistani ancestry female cases, 30,273 European ancestry male controls, 25,374 European ancestry female controls, 2,088 Pakistani ancestry male controls, 384 Pakistani ancestry female controls	9q21.32	TLE1	rs2796441-G	NR	5E-9	(men)	1.09	[1.06-1.13]	Affymetrix, Illumina [up to 2500000] (imputed)	N
1228	chr9	84308947	84308948	rs2796441	22885922	Morris AP	2012-09-01	Nat Genet	Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes.	Type 2 diabetes	6,377 European ancestry male cases, 5,794 European ancestry female cases, 22,243 European ancestry male controls, 34,619 European ancestry female controls	12,938 European ancestry male cases, 8,553 European ancestry female cases, 904 Pakistani ancestry male cases, 274 Pakistani ancestry female cases, 30,273 European ancestry male controls, 25,374 European ancestry female controls, 2,088 Pakistani ancestry male controls, 384 Pakistani ancestry female controls	9q21.32	TLE1	rs2796441-G	0.574668679623249	5E-9		1.07	[1.05-1.10]	Affymetrix, Illumina [up to 2500000] (imputed)	N
1228	chr9	84311799	84311800	rs9410573	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	9q21.32		rs9410573-C	0.625425669	4E-20		0.08688338	[0.068-0.105] unit decrease	Illumina [13429769] (imputed)	N
1228	chr9	84311799	84311800	rs9410573	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	9q21.32		rs9410573-C	NR	6E-26		0.0811	[0.066-0.096] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1228	chr9	84311799	84311800	rs9410573	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 29,0641 European ancestry controls	NA	9q21.32	RP11-154D17.1	rs9410573-C	0.421202	2E-13		0.08711932	[0.064-0.11] unit decrease	Affymetrix [7288503] (imputed)	N
1228	chr9	84313059	84313060	rs146209416	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	9q21.32	RP11-154D17.1	rs146209416-A	0.044926	4E-15		0.04196145	[0.031-0.052] unit increase	Affymetrix [93095623] (imputed)	N
1228	chr9	84313463	84313464	rs62576226	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	9q21.32		rs62576226-C	NR	1E-14		0.0185	[0.014-0.023] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
1228	chr9	84316639	84316640	rs145294512	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	9q21.32	RP11-154D17.1	rs145294512-C	0.048322	7E-17		0.0413793	[0.032-0.051] unit increase	Affymetrix [93095623] (imputed)	N
1228	chr9	84320638	84320639	rs55693403	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	9q21.32		rs55693403-T	0.942	2E-11		0.16	[-0.2--0.11] % decrease	Affymetrix [NR] (imputed)	N
1228	chr9	84320638	84320639	rs55693403	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	9q21.32	RP11-154D17.1	rs55693403-A	0.057703	6E-12		0.03295223	[0.024-0.042] unit increase	Affymetrix [93095623] (imputed)	N
1228	chr9	84320638	84320639	rs55693403	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	9q21.32	RP11-154D17.1	rs55693403-A	0.057781	3E-14		0.03669402	[0.027-0.046] unit increase	Affymetrix [93095623] (imputed)	N
1228	chr9	84372109	84372110	rs1007994	29855537	Hirata T	2018-05-31	Sci Rep	Japanese GWAS identifies variants for bust-size, dysmenorrhea, and menstrual fever that are eQTLs for relevant protein-coding or long non-coding RNAs.	Menstruation quality of life impact (bowel movement)	903 Japanese ancestry female cases, 4,831 Japanese ancestry female controls	921 Japanese ancestry female cases, 4,693 Japanese ancestry female controls	9q21.32	NR	rs1007994-C	0.444195005	3E-6		0.17260958	[0.1-0.24] unit decrease	Affymetrix [536506]	N
1228	chr9	84372740	84372741	rs11139399	22745009	Melville SA	2012-05-15	Ann Neurol	Multiple loci influencing hippocampal degeneration identified by genome scan.	Hippocampal atrophy	1149 European ancestry Alzheimer disease cases, 336 European ancestry individuals with mild cognitive impairment, 188 European ancestry controls	419 African American Alzheimer disease cases	9q21.32	TLE1	rs11139399-C	0.41	1E-6	(Hippocampal volume)			Illumina [2131250] (imputed)	N
1228	chr9	84388612	84388613	rs185117875	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels	3,806 African American individuals	NA	9q21.32		rs185117875-?	NR	3E-6		0.24	[0.14-0.34] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1228	chr9	84391173	84391174	rs10081631	29921221	Cha S	2018-06-19	BMC Genomics	Identification of five novel genetic loci related to facial morphology by genome-wide association studies.	Forehead morphology	5,643 Korean ancestry individuals	1,926 Korean ancestry individuals	9q21.32	TLE1, SPATA31D4	rs10081631-C	0.45	7E-6	(Forehead height)	0.676	[NR] unit increase	Affymetrix [311944]	N
1229	chr9	84437414	84437415	rs7854383	30891314	Saad MN	2019-01-18	J Adv Res	Studying the effects of haplotype partitioning methods on the RA-associated genomic results from the North American Rheumatoid Arthritis Consortium (NARAC) dataset.	Rheumatoid arthritis	868 European ancestry cases, 1,194 European ancestry controls	NA	9q21.32	TLE1, FAM75D5	rs7854383-G	0.906	1E-9				NR [509413]	N
1229	chr9	84437414	84437415	rs7854383	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	9q21.32	FLJ46321	rs7854383-?	NR	6E-6	(PC 32:1)	0.53121376	[0.3-0.76] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1229	chr9	84460854	84460855	rs10867821	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	9q21.32	NR	rs10867821-?	NR	4E-10		6.272	NR z score decrease	Illumina [at least 830937] (imputed)	N
1229	chr9	84470875	84470876	rs11788387	31194736	Tiensuu H	2019-06-13	PLoS Genet	Risk of spontaneous preterm birth and fetal growth associates with fetal SLIT2.	Spontaneous preterm birth with premature rupture of membranes	133 Finnish ancestry infant cases, 419 Finnish ancestry infant controls	NA	9q21.32	LOC105376108, SPATA31D4	rs11788387-?	NR	6E-7		2.96		Illumina [6778521] (imputed)	N
1229	chr9	84522748	84522749	rs13295552	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	9q21.32	NR	rs13295552-C	0.029172681294964	5E-6	(IGP56)	0.9104	[0.52-1.3] unit increase	Illumina [~ 2500000] (imputed)	N
1229	chr9	84530497	84530498	rs114426311	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,963 Sub-Saharan African ancestry females	NA	9q21.32		rs114426311-C	0.919909	1E-6		0.023704	[0.014-0.033] unit increase	Illumina [13900000] (imputed)	N
1231	chr9	84686808	84686809	rs192693579	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Spondin-1 levels	21,758 European ancestry individuals	9,173 individuals	9q21.32		rs192693579-A	0.013	8E-7		0.4684	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1231	chr9	84736302	84736303	rs1319017	29483656	Pardinas AF	2018-02-26	Nat Genet	Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.	Schizophrenia	40,675 European ancestry cases, 64,643 European ancestry controls	1,651 European ancestry cases, 4,111 cases, 142,717 European ancestry controls, 11,507 controls	9q21.32	SPATA31D1	rs1319017-?	NR	8E-11		1.0683761	[1.05-1.09]	Illumina [8000000] (imputed)	N
1231	chr9	84739940	84739941	rs11139497	31268507	Periyasamy S	2019-07-03	JAMA Psychiatry	Association of Schizophrenia Risk With Disordered Niacin Metabolism in an Indian Genome-wide Association Study.	Schizophrenia	816 Indian ancestry cases, 900 Indian ancestry controls, 505 Indian ancestry cases and 871 Indian ancestry controls from 405 families, up to 36,989 European and unknown ancestry cases, up to 113,075 European and unknown ancestry controls	NA	9q21.32	NR	rs11139497-?	NR	3E-9				Illumina [up to 5582932] (imputed)	N
1231	chr9	84739940	84739941	rs11139497	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	9q21.32	NR	rs11139497-A	NR	2E-9		1.07	[NR]	Illumina [7158791] (imputed)	N
1231	chr9	84739940	84739941	rs11139497	25056061	Ripke S	2014-07-22	Nature	Biological insights from 108 schizophrenia-associated genetic loci.	Schizophrenia	32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	1,513 European ancestry cases, 66,236 European ancestry controls	9q21.32	TLE1	rs11139497-A	0.337	4E-9		1.069	[1.045-1.093]	Affymetrix, Illumina [9005918] (imputed)	N
1231	chr9	84744272	84744273	rs7048006	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	9q21.32		rs7048006-?	NR	7E-11				NR [~ 8900000] (imputed)	N
1231	chr9	84799536	84799537	rs2767713	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	9q21.32	NR	rs2767713-?	NR	2E-9		1.0586604	[1.04-1.08]	Affymetrix, Illumina [12447948] (imputed)	N
1231	chr9	84799536	84799537	rs2767713	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	9q21.32	RPS2P34	rs2767713-C	NR	6E-8	(EA)	1.071	[1.05-1.1]	Illumina [6627481] (imputed)	N
1231	chr9	84799536	84799537	rs2767713	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	9q21.32	RPS2P34	rs2767713-C	NR	1E-10		1.0729614	[1.05-1.09]	Illumina [6627481] (imputed)	N
1231	chr9	84799536	84799537	rs2767713	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	9q21.32	FAM75D1	rs2767713-C	NR	2E-8		1.0626993	[1.04-1.08]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1231	chr9	84799536	84799537	rs2767713	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	9q21.32	SPATA31D1, SPATA31D3, SPATA31D4, SPATA31D5P	rs2767713-?		2E-8		1.0638298	[1.04-1.09]	Affymetrix, Illumina [NR]	N
1233	chr9	84982397	84982398	rs4877691	26030696	Cho MH	2015-06-01	Am J Respir Crit Care Med	A Genome-Wide Association Study of Emphysema and Airway Quantitative Imaging Phenotypes.	Airway imaging phenotypes	5,385 European ancestry chronic obstructive pulmonary disease cases, 901 African American chronic obstructive pulmonary disease cases, 3,613 European ancestry controls, 2,132 African American controls	NA	9q21.32	FAM75D1	rs4877691-A	NR	7E-7	(Pi10, Cases)	0.017	[0.0017-0.0323] unit decrease	Illumina [7600000] (imputed)	N
1233	chr9	85060795	85060796	rs117517710	31073882	Plotnikov D	2019-05-09	Hum Genet	A commonly occurring genetic variant within the NPLOC4-TSPAN10-PDE6G gene cluster is associated with the risk of strabismus.	Strabismus	1,345 British ancestry cases, 65,349 British ancestry controls	116 cases, 5,084 controls	9q21.32	NR	rs117517710-T	0.02	3E-6	(EA)	1.69	[1.36-2.11]	Affymetrix [7469170] (imputed)	N
1234	chr9	85082898	85082899	rs2026194	30626913	Amare AT	2019-01-09	Mol Psychiatry	Bivariate genome-wide association analyses of the broad depression phenotype combined with major depressive disorder, bipolar disorder or schizophrenia reveal eight novel genetic loci for depression.	Broad depression or schizophrenia	9,240 European ancestry broad depression cases, 9,519 European ancestry broad depression controls, 51,258 European ancestry individuals, 36,989 European and East Asian ancestry schizophrenia cases, 113,075 European and East Asian ancestry schizophrenia controls	322,580 individuals	9q21.32	SPATA31D1	rs2026194-T	0.24	2E-9				Affymetrix, Illumina [at least 918921] (imputed)	N
1234	chr9	85093918	85093919	rs1330816	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9q21.32		rs1330816-?	NR	7E-24				NR [~ 8900000] (imputed)	N
1234	chr9	85126162	85126163	rs7866939	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	9q21.32		rs7866939-C	NR	3E-16		0.017	[0.013-0.021] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
1234	chr9	85126162	85126163	rs7866939	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	9q21.32	RASEF	rs7866939-C	0.33	2E-8		1.06	[1.04-1.08]	Affymetrix, Illumina [6224355] (imputed)	N
1234	chr9	85126284	85126285	rs7851531	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q21.32	NR	rs7851531-G	0.430139	2E-11				Affymetrix, Illumina [24588908] (imputed)	N
1234	chr9	85128120	85128121	rs34804405	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	9q21.32		rs34804405-T	NR	1E-13		0.0159	[0.012-0.02] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1234	chr9	85128340	85128341	rs928223	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota alpha diversity (Shannon index)	1,068 Japanese ancestry individuals	NA	9q21.32	RP11-15B24.5	rs928223-A	0.09	2E-6	(female)	0.324	[0.19-0.46] unit decrease	Illumina [6380737] (imputed)	N
1234	chr9	85128517	85128518	rs11139596	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	9q21.32	RP11-15B24.5	rs11139596-G	0.225237	4E-10		0.01692542	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1234	chr9	85128517	85128518	rs11139596	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	9q21.32	RP11-15B24.5	rs11139596-G	0.225282	2E-19		0.0245437	[0.02-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1234	chr9	85128517	85128518	rs11139596	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	9q21.32	RP11-15B24.5	rs11139596-G	0.225253	3E-19		0.023942064	[0.019-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1234	chr9	85128517	85128518	rs11139596	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	9q21.32	NR	rs11139596-G	0.224722	1E-26		0.02345	[0.019-0.028] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
1234	chr9	85128517	85128518	rs11139596	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	9q21.32	NR	rs11139596-G	0.225235	6E-26		0.024525	[0.02-0.029] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
1234	chr9	85128517	85128518	rs11139596	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	NA	9q21.32	RP11-15B24.5	rs11139596-T	0.7759	3E-9		0.1495	[0.1-0.2] unit decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1234	chr9	85129969	85129970	rs1330826	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	9q21.32		rs1330826-C	NR	3E-12		0.01	[0.0073-0.0127] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1234	chr9	85129969	85129970	rs1330826	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	9q21.32		rs1330826-G	0.772	1E-14		0.1	[-0.13--0.08] % decrease	Affymetrix [NR] (imputed)	N
1234	chr9	85129969	85129970	rs1330826	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	9q21.32	AL162726.3	rs1330826-C	0.2268	1E-12		0.0162	[0.012-0.021] unit increase	Affymetrix [18391927] (imputed)	N
1234	chr9	85129969	85129970	rs1330826	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q21.32	NR	rs1330826-C	0.280478	5E-28				Affymetrix, Illumina [24246363] (imputed)	N
1234	chr9	85129969	85129970	rs1330826	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q21.32	NR	rs1330826-C	0.285132	1E-24				Affymetrix, Illumina [20825802] (imputed)	N
1234	chr9	85129969	85129970	rs1330826	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	9q21.32		rs1330826-?	NR	1E-21				NR [~ 8900000] (imputed)	N
1234	chr9	85135914	85135915	rs7043482	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	9q21.32	SPATA31D5P, RASEF	rs7043482-A	0.65	8E-10		0.42	[0.28-0.56] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1234	chr9	85135914	85135915	rs7043482	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	9q21.32	RP11-15B24.5	rs7043482-A	0.672	1E-9		0.4364	[0.3-0.58] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1234	chr9	85135914	85135915	rs7043482	21901158	Irvin MR	2011-08-25	PLoS One	Genome-wide detection of allele specific copy number variation associated with insulin resistance in African Americans from the HyperGEN study.	Insulin resistance/response	1,040 African American individuals	NA	9q21.32	intergenic	rs7043482-G	0.19	3E-6	(HOMA-IR)	12.0	[7.00 - 18.00] % increase	Affymetrix [872243]	N
1234	chr9	85161129	85161130	rs117133909	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	9q21.32	RP11-15B24.5	rs117133909-G	0.01489	2E-9		0.0588468	[0.042-0.075] unit decrease	Affymetrix [93095623] (imputed)	N
1234	chr9	85161129	85161130	rs117133909	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	9q21.32	RP11-15B24.5	rs117133909-G	0.014886	9E-10		0.055805523	[0.038-0.074] unit decrease	Affymetrix [93095623] (imputed)	N
1234	chr9	85184334	85184335	rs11139622	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	9q21.32	NR	rs11139622-?	NR	5E-32				Affymetrix [NR]	N
1234	chr9	85189087	85189088	rs4565536	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	9q21.32		rs4565536-A	0.4993	5E-8		0.012	[0.0081-0.0159] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
1235	chr9	85229753	85229754	rs62579068	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Coffee consumption	335,909 European ancestry individuals	39,924 European ancestry individuals	9q21.32	RASEF	rs62579068-A	0.1969	6E-7		0.0094	[0.0057-0.0131] unit increase	Affymetrix [~ 7740000] (imputed)	N
1235	chr9	85311146	85311147	rs668853	19122664	Silverberg MS	2009-01-04	Nat Genet	Ulcerative colitis-risk loci on chromosomes 1p36 and 12q15 found by genome-wide association study.	Ulcerative colitis	1,022 European ancestry cases, 2,503 European ancestry controls	1,387 European ancestry cases, 1,115 European ancestry controls	9q21.32	intergenic	rs668853-G	0.39	2E-6		1.2		Illumina [280748]	N
1235	chr9	85312074	85312075	rs654629	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	9q21.32	NR	rs654629-G	0.6079	5E-12		0.0266	[0.019-0.034] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1235	chr9	85318703	85318704	rs555784	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	9q21.32	NR	rs555784-T	0.6158	2E-10		0.0301	[0.021-0.039] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1235	chr9	85318703	85318704	rs555784	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	9q21.32	SPATA31D1, RASEF	rs555784-T	0.6196999999999999	3E-10		1.0252126		Affymetrix [11880941] (imputed)	N
1236	chr9	85349951	85349952	rs11139717	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Pursuit maintenance gain	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	9q21.32	RASEF	rs11139717-G	0.0274	8E-7	(African)			Illumina [4404269] (imputed)	N
1236	chr9	85362957	85362958	rs11139727	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	9q21.32	FRMD3	rs11139727-?	NR	6E-6	(PC 36:5)	0.2929911	[0.17-0.42] unit increase	Affymetrix [at least 2500000] (imputed)	N
1236	chr9	85363648	85363649	rs72739140	31791832	Koks S	2019-11-12	J Arthroplasty	The Genetic Variations Associated With Time to Aseptic Loosening After Total Joint Arthroplasty.	Aseptic loosening in total joint arthroplasty	97 cases, 289 controls	NA	9q21.32	Intergenic	rs72739140-A	0.08	2E-6		6.84	[NR]	Illumina [up to 600000]	N
1236	chr9	85364112	85364113	rs13284654	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota (beta diversity)	858 Metropolitan French ancestry individuals	NA	9q21.32	NR	rs13284654-T	0.208	3E-7	(Unifrac metric)	4.991993	NR z-score increase	Illumina [5293637] (imputed)	N
1236	chr9	85414980	85414981	rs1998303	17903293	Benjamin EJ	2007-09-19	BMC Med Genet	Genome-wide association with select biomarker traits in the Framingham Heart Study.	Select biomarker traits	1,012 European ancestry individuals	NA	9q21.32	intergenic	rs1998303-?	NR	1E-6	(ALT)			Affymetrix [70897]	N
1237	chr9	85493039	85493040	rs11139851	30120083	Ferguson A	2018-08-14	EBioMedicine	Genome-Wide Association Study of Circadian Rhythmicity in 71,500 UK Biobank Participants and Polygenic Association with Mood Instability.	Relative amplitude of rest-activity cycles	77,440 European ancestry individuals	NA	9q21.32	Intergenic	rs11139851-?	NR	6E-7		0.002	unit increase	Affymetrix [7969123] (imputed)	N
1237	chr9	85505321	85505322	rs113684415	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 8, orbital inclination due to vertical and horizontal position of exocanthion)	2,187 European ancestry individuals	NA	9q21.32	NR	rs113684415-T	0.01697	1E-6		0.5582	[0.33-0.78] unit increase	Illumina [34985077] (imputed)	N
1237	chr9	85519891	85519892	rs7045089	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Subjective well-being	298,420 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	9q21.32	NR	rs7045089-A	0.5471	4E-6		0.0122	[0.0071-0.0173] unit decrease	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
1237	chr9	85570717	85570718	rs188644522	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-6 levels	8,189 Finnish ancestry individuals	NA	9q21.32	NR	rs188644522-G	NR	9E-6		0.227	[0.13-0.33] SD units decrease	NR [10700000] (imputed)	N
1238	chr9	85609780	85609781	rs10867921	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	9q21.32	RASEF	rs10867921-A	0.03	8E-6	(Bike energy expenditure )	0.03	[NR] kcal/min increase	Illumina [899892]	N
1238	chr9	85674961	85674962	rs182283403	33075057	Li X	2020-10-19	PLoS Genet	Automated feature extraction from population wearable device data identified novel loci associated with sleep and circadian rhythms.	Sleep (1/2-day periodicity)	90,515 individuals	NA	9q21.32	RASEF	rs182283403-T	NR	2E-8		0.298	[0.19-0.4] unit increase	NR [11024754] (imputed)	N
1238	chr9	85706306	85706307	rs62561934	27629369	Gao J	2016-09-15	Neuropsychopharmacology	Genome-Wide Association Study of Loneliness Demonstrates a Role for Common Variation.	Loneliness (multivariate analysis)	8,490 European ancestry individuals, 1,228 African American individuals, 867 Hispanic American individuals, 175 individuals	NA	9q21.32	RASEF, FRMD3	rs62561934-?	NR	4E-7	(EA)			Illumina [7205781] (imputed)	N
1239	chr9	85787717	85787718	rs4322086	27997041	Traylor M	2016-12-20	Ann Neurol	Genetic variation at 16q24.2 is associated with small vessel stroke.	Ischemic stroke	10,210 European ancestry cases, 12,285 European ancestry controls	7,743 European ancestry cases, 17,970 European ancestry controls	9q21.32	NR	rs4322086-?	NR	7E-6		4.489	z score increase	Affymetrix, Illumina [NR] (imputed)	N
1239	chr9	85791649	85791650	rs13285079	24699409	Prokopenko I	2014-04-03	PLoS Genet	A central role for GRB10 in regulation of islet function in man.	Insulin sensitivity index	up to 4,565 European individuals, up to 413 Old Order Amish (founder/genetic isolate) individuals	20,514 non-diabetic individuals	9q21.32	FRMD3	rs13285079-T	NR	2E-7		0.35	[0.22-0.48] unit increase	Affymetrix, Illumina [at least 1961018] (imputed)	N
1239	chr9	85810909	85810910	rs10115371	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	9q21.32	NR	rs10115371-?	NR	6E-6	(AA)	5.92	[5.08-6.76]	Illumina [905956]	N
1239	chr9	85832383	85832384	rs13293114	29698419	Pande M	2018-04-26	PLoS One	Genetic susceptibility markers for a breast-colorectal cancer phenotype: Exploratory results from genome-wide association studies.	Breast cancer and/or colorectal cancer	589 European ancestry colorectal cancer with a family history of breast cancer cases, 378 European ancestry breast cancer cases with a family history of colorectal cancer cases, 18 European ancestry breast and colorectal cancer cases, 1,769 European ancestry controls	NA	9q21.32	RP11-439K3.1	rs13293114-?	0.36	4E-6		1.3157895	[1.18-1.56]	Illumina [6220060] (imputed)	N
1240	chr9	85910511	85910512	rs1570582	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Lewy body disease	up to 3,526 individuals	NA	9q21.32	FRMD3	rs1570582-C	0.9476	9E-6	(Ordinal II)	0.502	[0.28-0.72] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1240	chr9	85910511	85910512	rs1570582	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Lewy body disease	up to 3,526 individuals	NA	9q21.32	FRMD3	rs1570582-C	0.9471	2E-6	(Ordinal I)	0.5137	[0.3-0.73] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1240	chr9	85978774	85978775	rs11140055	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9q21.32		rs11140055-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1241	chr9	85993900	85993901	rs115795127	28498854	Liang J	2017-05-12	PLoS Genet	Single-trait and multi-trait genome-wide association analyses identify novel loci for blood pressure in African-ancestry populations.	Hypertension	18,440 African individuals	2,375 African individuals, 3,718 Korean ancestry individuals, 9,348 European ancestry individuals, 3,445 Hispanic individuals	9q21.32	FRMD3	rs115795127-T	NR	1E-8		0.1736	[0.11-0.24] unit increase	Affymetrix, Illumina [at least 30072738] (imputed)	N
1241	chr9	85993900	85993901	rs115795127	28498854	Liang J	2017-05-12	PLoS Genet	Single-trait and multi-trait genome-wide association analyses identify novel loci for blood pressure in African-ancestry populations.	Blood pressure traits (multi-trait analysis)	Up to 31,155 African individuals	Up to 4,187 African individuals, up to 14,016 Korean ancestry individuals, up to 23,914 European ancestry individuals, up to 12,278 Hispanic individuals	9q21.32	FRMD3	rs115795127-T	NR	7E-9	(Het)			Affymetrix, Illumina [at least 30072738] (imputed)	N
1242	chr9	86177004	86177005	rs148334987	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	9q21.32	NR	rs148334987-G	0.01	8E-6		1.7	[1.46-1.94]	Illumina [8468885] (imputed)	N
1242	chr9	86200808	86200809	rs190601686	31095341	Kerns SL	2019-05-16	J Natl Cancer Inst	Radiogenomics Consortium Genome-Wide Association Study Meta-analysis of Late Toxicity after Prostate Cancer Radiotherapy.	Toxicity response to radiotherapy in prostate cancer (hematuria) (time to event)	3,619 European ancestry individuals	538 Japanese ancestry individuals	9q21.32	NR	rs190601686-?	0.01	2E-7	(EA)	9.13	[3.95-21.1]	Affymetrix, Illumina [~ 6000000] (imputed)	N
1242	chr9	86214148	86214149	rs12339683	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	9q21.32	UBQLN1	rs12339683-?	NR	9E-6	(taurocholate)	0.28687862	[0.16-0.41] unit increase	Affymetrix [at least 2500000] (imputed)	N
1242	chr9	86214614	86214615	rs2780987	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	9q21.32	NR	rs2780987-G	NR	2E-10		0.0196	[0.014-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
1242	chr9	86222716	86222717	rs4364707	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	9q21.32	RNU4-15P	rs4364707-G	NR	2E-9		0.0218367	[0.015-0.029] unit increase	Affymetrix [321016] (imputed)	N
1243	chr9	86275558	86275559	rs1044214	33087363	Xu W	2020-10-21	Sci Adv	The FAM171A2 gene is a key regulator of progranulin expression and modifies the risk of multiple neurodegenerative diseases.	Cerebrospinal fluid progranulin levels	432 European ancestry individuals	930 Han Chinese ancestry individuals	9q21.32	NR	rs1044214-A	NR	9E-6	(EA)	0.001993	NR unit increase	Illumina [3262988] (imputed)	N
1243	chr9	86310302	86310303	rs12235741	31826910	Lu Y	2019-12-11	Cancer Epidemiol Biomarkers Prev	Identification of novel loci and new risk variant in known loci for colorectal cancer risk in East Asians.	Colorectal cancer	23,572 East Asian ancestry cases, 48,700 East Asian ancestry controls	58,131 European ancestry cases, 67,347 European ancestry controls	9q21.32		rs12235741-G	0.5135	1E-6	(East Asian)	1.08	[1.04-1.11]	Affymetrix, Illumina [up to 47000000] (imputed)	N
1243	chr9	86325805	86325806	rs1961952	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	9q21.32	IDNK, UBQLN1, NTRK2	rs1961952-?		6E-10				Affymetrix, Illumina [NR] (imputed)	N
1243	chr9	86325805	86325806	rs1961952	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	9q21.32	NR	rs1961952-?	NR	3E-9				Illumina [7760689] (imputed)	N
1243	chr9	86347531	86347532	rs7020920	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	9q21.32		rs7020920-A	0.3502	6E-9	(conditional-joint)	0.0086	[0.0057-0.0115] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1243	chr9	86367994	86367994	rs141957346	33568662	Dashti HS	2021-02-10	Nat Commun	Genetic determinants of daytime napping and effects on cardiometabolic health.	Daytime nap	452,633 European ancestry individuals	541,333 European ancestry individuals	9q21.32	GKAP1	rs141957346-AT		3E-11		0.0058	[0.004-0.0076] unit increase	Affymetrix [13304133] (imputed)	N
1243	chr9	86368659	86368660	rs7047907	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	9q21.32		rs7047907-A	NR	3E-9		0.0112	[0.0075-0.0149] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
1243	chr9	86368659	86368660	rs7047907	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	9q21.32		rs7047907-?	NR	2E-7				NR [~ 8900000] (imputed)	N
1243	chr9	86368659	86368660	rs7047907	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	9q21.32	GKAP1	rs7047907-A	0.7438	6E-11		0.02677011	[0.019-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
1243	chr9	86368659	86368660	rs7047907	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	9q21.32	GKAP1	rs7047907-A	0.7438	8E-12		0.02802455	[0.02-0.036] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1244	chr9	86381317	86381318	rs199816133	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	9q21.32	NR	rs199816133-C	0.743601	1E-23		0.0286444	[0.023-0.034] unit increase	Affymetrix [16585745] (imputed)	N
1244	chr9	86381637	86381638	rs7855503	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	9q21.32		rs7855503-C	0.3478	2E-9		0.0088	[0.0059-0.0117] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1244	chr9	86381637	86381638	rs7855503	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	9q21.32	Intergenic	rs7855503-C	0.3478	3E-10	(MTAG)	0.0087	[0.006-0.0114] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1244	chr9	86418421	86418422	rs6559744	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	9q21.32	GKAP1	rs6559744-A	0.256493	5E-17		0.021169916	[0.016-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1244	chr9	86419282	86419283	rs371212078	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	9q21.32	GKAP1	rs371212078-C	0.2289	9E-12		0.02992804	[0.021-0.039] unit increase	Affymetrix [~ 2500000] (imputed)	N
1244	chr9	86429304	86429305	rs295268	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	9q21.32		rs295268-T	0.743838	7E-10		0.0280531	[0.019-0.037] unit decrease	NR [11722792] (imputed)	N
1244	chr9	86429304	86429305	rs295268	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs ADHD (ordinary least squares (OLS))	40,675 schizophrenia cases, 19,099 ADHD cases	NA	9q21.32		rs295268-?	NR	6E-10		0.0212	NR unit increase	NR [4428082] (imputed)	N
1244	chr9	86429304	86429305	rs295268	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	9q21.32	GKAP1	rs295268-C	0.25970000000000004	2E-10		1.0312792		Affymetrix [11880941] (imputed)	N
1244	chr9	86429304	86429305	rs295268	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	9q21.32		rs295268-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1244	chr9	86429304	86429305	rs295268	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	9q21.32		rs295268-?	NR	1E-15				NR [~ 8900000] (imputed)	N
1244	chr9	86429304	86429305	rs295268	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	9q21.32	NR	rs295268-?	NR	1E-7		5.303	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1244	chr9	86446618	86446618	rs567969026	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of linoleic acid to total fatty acids	115,006 European ancestry individuals	NA	9q21.32		rs567969026-C,rs567969026-C	0.748788	3E-9		0.0275398	[0.018-0.037] unit decrease	NR [11722792] (imputed)	N
1244	chr9	86446618	86446618	rs567969026	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of linoleic acid to total fatty acids	115,006 European ancestry individuals	NA	9q21.32		rs567969026-C,rs567969026-C	0.748788	3E-9		0.0275398	[0.018-0.037] unit decrease	NR [11722792] (imputed)	N
1244	chr9	86446937	86446938	rs295289	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of saturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	9q21.32		rs295289-T	0.743309	7E-9		0.0271039	[0.018-0.036] unit increase	NR [11722792] (imputed)	N
1244	chr9	86463209	86463210	rs143020014	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Sex hormone-binding globulin levels	389,354 European ancestry individuals	NA	9q21.32		rs143020014-G	0.55	1E-29		0.022	nmol/L increase	NR [NR] (imputed)	N
1244	chr9	86463209	86463210	rs143020014	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	9q21.32		rs143020014-G	0.55	7E-37				NR [NR] (imputed)	N
1244	chr9	86463209	86463210	rs143020014	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	9q21.32		rs143020014-G	0.55	2E-9		0.009	% increase	NR [NR] (imputed)	N
1244	chr9	86463209	86463210	rs143020014	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Aspartate aminotransferase levels	424,778 European ancestry individuals	NA	9q21.32		rs143020014-G	0.55	5E-9		0.012	U/L increase	NR [NR] (imputed)	N
1244	chr9	86465078	86465079	rs71502726	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	9q21.32	NR	rs71502726-T	NR	4E-9		0.0545	[0.036-0.073] unit increase	Affymetrix [9000000] (imputed)	N
1244	chr9	86466967	86466968	rs295273	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	9q21.32	NR	rs295273-A	0.255616	2E-19		0.020579	[0.016-0.025] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
1244	chr9	86472375	86472376	rs167180	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q21.32	NR	rs167180-G	0.260111	8E-18				Affymetrix, Illumina [19872809] (imputed)	N
1244	chr9	86481872	86481873	rs28712486	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	9q21.32		rs28712486-C	0.769452	3E-8		0.0263172	[0.017-0.036] unit decrease	NR [11722792] (imputed)	N
1244	chr9	86481872	86481873	rs28712486	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	9q21.32		rs28712486-C	0.769452	5E-8		0.0255372	[0.016-0.035] unit decrease	NR [11722792] (imputed)	N
1244	chr9	86481872	86481873	rs28712486	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	9q21.32		rs28712486-A	NR	3E-17		0.0234	[0.018-0.029] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
1244	chr9	86481872	86481873	rs28712486	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	9q21.32	KIF27	rs28712486-C	0.769172	5E-11		0.0148907	[0.01-0.019] unit decrease	Affymetrix [NR] (imputed)	N
1244	chr9	86499922	86499923	rs35010780	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	9q21.32	KIF27	rs35010780-A	NR	5E-9		0.0275539	[0.018-0.037] unit increase	Affymetrix [321114] (imputed)	N
1244	chr9	86499922	86499923	rs35010780	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	9q21.32	KIF27	rs35010780-A	NR	2E-9		0.0258383	[0.017-0.034] unit increase	Affymetrix [321016] (imputed)	N
1244	chr9	86504004	86504005	rs13289566	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	9q21.32		rs13289566-C	0.784	4E-11				Affymetrix [10369434] (imputed)	N
1244	chr9	86504004	86504005	rs13289566	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	9q21.32	KIF27	rs13289566-T	NR	4E-13		0.0249207	[0.018-0.032] unit increase	Affymetrix [321016] (imputed)	N
1244	chr9	86504004	86504005	rs13289566	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	9q21.32	NR	rs13289566-T	NR	5E-14		0.0219	[0.016-0.028] unit decrease	Affymetrix [9000000] (imputed)	N
1244	chr9	86504004	86504005	rs13289566	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	9q21.32	NR	rs13289566-T	NR	2E-56		0.0482	[0.042-0.054] unit increase	Affymetrix [9000000] (imputed)	N
1244	chr9	86504004	86504005	rs13289566	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	9q21.32	NR	rs13289566-T	NR	1E-16		0.0251	[0.019-0.031] unit increase	Affymetrix [9000000] (imputed)	N
1244	chr9	86504004	86504005	rs13289566	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	9q21.32	NR	rs13289566-T	NR	8E-10		0.0178	[0.012-0.023] unit increase	Affymetrix [9000000] (imputed)	N
1244	chr9	86504507	86504508	rs2778373	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	9q21.32		rs2778373-G	NR	1E-10		0.0138	[0.0097-0.0179] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
1245	chr9	86520781	86520782	rs7869321	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	9q21.32	KIF27	rs7869321-T	0.255284	1E-32		0.030129684	[0.025-0.035] unit increase	Affymetrix [93095623] (imputed)	N
1245	chr9	86528857	86528858	rs10125715	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Reaction time	330,024 British ancestry individuals	NA	9q21.32		rs10125715-?	NR	1E-8				NR [7857346] (imputed)	N
1245	chr9	86528857	86528858	rs10125715	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	9q21.32	KIF27	rs10125715-?	NR	1E-8		0.009979	[0.0065-0.0134] unit increase	Affymetrix [805426] (imputed)	N
1245	chr9	86543774	86543775	rs537166841	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	9q21.32	KIF27	rs537166841-G	NR	8E-9		0.0207269	[0.014-0.028] unit increase	Affymetrix [321114] (imputed)	N
1245	chr9	86550646	86550647	rs7020300	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	9q21.32		rs7020300-G	NR	5E-20		0.0205	[0.016-0.025] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1245	chr9	86552204	86552205	rs7853377	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	9q21.32	C9orf64	rs7853377-A	0.77	5E-8		0.024	[NR] unit decrease	Affymetrix, Illumina [2834208] (imputed)	N
1245	chr9	86553588	86553589	rs3180887	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	9q21.32	NR	rs3180887-G	0.756029	1E-12		0.016323	[0.012-0.021] unit increase	Affymetrix [16583148] (imputed)	N
1245	chr9	86553588	86553589	rs3180887	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	9q21.32	NR	rs3180887-?	NR	3E-7		5.125	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1245	chr9	86556830	86556831	rs4535826	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	9q21.32	C9orf64	rs4535826-A	0.785381	1E-9		0.0137275	[0.0093-0.0182] unit increase	NR [13737936] (imputed)	N
1245	chr9	86556830	86556831	rs4535826	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	9q21.32		rs4535826-?	NR	5E-9		0.0149969	[0.01-0.02] unit increase	Affymetrix [20259828] (imputed)	N
1245	chr9	86572574	86572575	rs2576362	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	9q21.32		rs2576362-G	0.74539	8E-9		0.0263901	[0.017-0.035] unit increase	NR [11722792] (imputed)	N
1245	chr9	86572574	86572575	rs2576362	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	9q21.32		rs2576362-T	NR	1E-15		0.0194	[0.015-0.024] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
1245	chr9	86577540	86577541	rs796007	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	9q21.32		rs796007-A	0.251646	4E-15		0.020405315	[0.015-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1245	chr9	86577540	86577541	rs796007	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q21.32	NR	rs796007-A	0.257495	6E-19				Affymetrix, Illumina [23114412] (imputed)	N
1245	chr9	86577540	86577541	rs796007	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	9q21.32	NR	rs796007-A	0.252821	9E-21		0.02067	[0.016-0.025] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
1245	chr9	86582922	86582923	rs296884	32279069	Rovira P	2020-04-12	Neuropsychopharmacology	Shared genetic background between children and adults with attention deficit/hyperactivity disorder.	Attention deficit hyperactivity disorder (persistent)	6,532 European ancestry cases, 15,874 European ancestry controls	NA	9q21.32	NR	rs296884-?	0.74	1E-6		1.1235955	[1.08-1.19]	Illumina [~ 1113287] (imputed)	N
1245	chr9	86582925	86582925	rs113904294	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	9q21.32		rs113904294-T	0.748618	4E-8		0.0250204	[0.016-0.034] unit increase	NR [11722792] (imputed)	N
1245	chr9	86582925	86582925	rs113904294	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	9q21.32	RP11-575L7.8	rs113904294-TAATA	0.251109	1E-23		0.025561962	[0.021-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
1245	chr9	86582925	86582925	rs113904294	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	9q21.32	RP11-575L7.8	rs113904294-TAATA	0.251129	3E-18		0.02228014	[0.017-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1245	chr9	86583075	86583076	rs696825	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	9q21.32		rs696825-C	0.748	1E-8				Affymetrix [10369434] (imputed)	N
1245	chr9	86583075	86583076	rs696825	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	9q21.32	HNRNPK	rs696825-C	0.747076	6E-19		0.0203901	[0.016-0.025] unit increase	Affymetrix [NR] (imputed)	N
1245	chr9	86583075	86583076	rs696825	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	9q21.32	NR	rs696825-T	0.25184700000000004	5E-63		0.0241435	[0.021-0.027] unit increase	Affymetrix [16585854] (imputed)	N
1245	chr9	86583075	86583076	rs696825	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	9q21.32	NR	rs696825-T	0.25184700000000004	6E-55		0.025383	[0.022-0.029] unit increase	Affymetrix [16585866] (imputed)	N
1245	chr9	86583075	86583076	rs696825	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	9q21.32		rs696825-?	NR	8E-26				NR [~ 8900000] (imputed)	N
1245	chr9	86592025	86592026	rs296886	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	9q21.32		rs296886-G	NR	8E-9		0.016	[0.011-0.021] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
1245	chr9	86593313	86593314	rs167203	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	9q21.32		rs167203-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1245	chr9	86594797	86594798	rs796004	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	9q21.32		rs796004-T	NR	5E-18		0.0207	[0.016-0.025] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
1245	chr9	86594797	86594798	rs796004	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	9q21.32	HNRNPK	rs796004-T	0.257014	1E-12		0.018236356	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1245	chr9	86594797	86594798	rs796004	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	9q21.32	HNRNPK	rs796004-T	0.257012	3E-10		0.016141698	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1245	chr9	86594797	86594798	rs796004	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q21.32	NR	rs796004-T	0.262615	4E-31				Affymetrix, Illumina [23472807] (imputed)	N
1245	chr9	86594797	86594798	rs796004	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	9q21.32	NR	rs796004-T	0.25831	2E-29		0.024358	[0.02-0.029] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1245	chr9	86594797	86594798	rs796004	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9q21.32		rs796004-?	NR	1E-37				NR [~ 8900000] (imputed)	N
1245	chr9	86595069	86595070	rs296887	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	9q21.32	HNRNPK	rs296887-T	0.256931	4E-22		0.024505347	[0.02-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
1245	chr9	86595497	86595498	rs296888	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	9q21.32		rs296888-G	0.744	4E-21				Affymetrix [10369434] (imputed)	N
1245	chr9	86595497	86595498	rs296888	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q21.32	NR	rs296888-A	0.261801	6E-10				Affymetrix, Illumina [24588908] (imputed)	N
1245	chr9	86595570	86595571	rs296889	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	9q21.32	NR	rs296889-A	0.258554	1E-11		0.014128	[0.01-0.018] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1245	chr9	86595800	86595801	rs796003	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q21.32	NR	rs796003-T	0.262161	2E-32				Affymetrix, Illumina [24649327] (imputed)	N
1245	chr9	86595800	86595801	rs796003	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	9q21.32	NR	rs796003-T	0.258407	9E-33		0.025352	[0.021-0.03] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1245	chr9	86615744	86615745	rs6559754	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	9q21.32	RMI1	rs6559754-G	NR	2E-8		0.0158672	[0.01-0.021] unit decrease	Affymetrix [321016] (imputed)	N
1245	chr9	86617264	86617265	rs1982151	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	9q21.32		rs1982151-A	0.25673	8E-10		0.0276611	[0.019-0.036] unit increase	NR [11722792] (imputed)	N
1245	chr9	86617264	86617265	rs1982151	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	9q21.32		rs1982151-A	0.25673	7E-9		0.0258194	[0.017-0.035] unit increase	NR [11722792] (imputed)	N
1245	chr9	86617264	86617265	rs1982151	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	9q21.32	RMI1	rs1982151-A	0.2953	2E-8		0.0115	[0.0076-0.0154] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1245	chr9	86623267	86623268	rs4877815	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	9q21.32		rs4877815-?	NR	1E-11				NR [~ 8900000] (imputed)	N
1245	chr9	86626768	86626769	rs10868080	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	9q21.32	NR	rs10868080-T	0.255477	1E-27		0.0358052	[0.029-0.043] unit increase	Affymetrix [16577313] (imputed)	N
1245	chr9	86626768	86626769	rs10868080	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	9q21.32	NR	rs10868080-T	0.255669	3E-125		0.0226706	[0.021-0.025] unit increase	Affymetrix [16582909] (imputed)	N
1245	chr9	86626768	86626769	rs10868080	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	9q21.32	NR	rs10868080-T	0.255539	1E-62		0.0208344	[0.018-0.023] unit increase	Affymetrix [16582621] (imputed)	N
1245	chr9	86626768	86626769	rs10868080	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	9q21.32	NR	rs10868080-T	0.255669	2E-108		0.0235579	[0.021-0.026] unit increase	Affymetrix [16582965] (imputed)	N
1245	chr9	86626768	86626769	rs10868080	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	9q21.32	NR	rs10868080-T	0.255539	2E-57		0.0213279	[0.019-0.024] unit increase	Affymetrix [16582614] (imputed)	N
1245	chr9	86632066	86632067	rs7020841	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	9q21.32	NR	rs7020841-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
1245	chr9	86635272	86635273	rs10746727	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	9q21.32		rs10746727-C	NR	2E-23		0.0203	[0.016-0.024] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1246	chr9	86639108	86639109	rs10868082	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	9q21.32		rs10868082-T	0.251089	3E-8		0.0261079	[0.017-0.035] unit increase	NR [11722792] (imputed)	N
1246	chr9	86639108	86639109	rs10868082	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	9q21.32	NR	rs10868082-?	NR	6E-8		0.0095779	[0.0061-0.013] unit decrease	Affymetrix [805426] (imputed)	N
1246	chr9	86639998	86639999	rs7039458	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	9q21.32	HNRNPK, RMI1	rs7039458-G	0.256636	7E-17	(females)	0.02837	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1246	chr9	86639998	86639999	rs7039458	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	9q21.32	HNRNPK, RMI1	rs7039458-G	0.256636	5E-19		0.02449	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1246	chr9	86639998	86639999	rs7039458	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	9q21.32	HNRNPK, RMI1	rs7039458-G	0.256636	6E-18		0.02356	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1246	chr9	86639998	86639999	rs7039458	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	9q21.32	HNRNPK, RMI1	rs7039458-G	0.256636	2E-6	(males)	0.0212	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1246	chr9	86639998	86639999	rs7039458	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	9q21.32	HNRNPK, RMI1	rs7039458-G	0.256636	2E-13	(females)	0.02549	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1246	chr9	86641122	86641123	rs7848888	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	9q21.32		rs7848888-C	0.221223	5E-8		0.0268385	[0.017-0.036] unit decrease	NR [11722792] (imputed)	N
1246	chr9	86641122	86641123	rs7848888	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	9q21.32		rs7848888-C	0.221223	5E-8		0.0271305	[0.017-0.037] unit decrease	NR [11722792] (imputed)	N
1246	chr9	86641122	86641123	rs7848888	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	9q21.32		rs7848888-T	NR	5E-9		0.016	[0.011-0.021] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
1246	chr9	86657782	86657783	rs10868089	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	9q21.32		rs10868089-C	NR	3E-9		0.0188	[0.013-0.025] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
1246	chr9	86666992	86666993	rs1020048	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	9q21.32		rs1020048-C	NR	1E-16		0.0267	[0.02-0.033] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
1246	chr9	86694758	86694759	rs10746732	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium HDL	115,082 European ancestry individuals	NA	9q21.32		rs10746732-G	0.222432	4E-8		0.0270878	[0.017-0.037] unit decrease	NR [11722792] (imputed)	N
1246	chr9	86694758	86694759	rs10746732	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	9q21.32		rs10746732-G	0.222458	6E-9		0.0281475	[0.019-0.038] unit increase	NR [11722792] (imputed)	N
1246	chr9	86696173	86696174	rs1968498	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	9q21.32	NR	rs1968498-T	NR	2E-16		0.0544	[0.041-0.067] unit decrease	Affymetrix [9000000] (imputed)	N
1246	chr9	86703560	86703561	rs10780649	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	9q21.32	RMI1	rs10780649-T	0.4785	2E-9		0.013004407	[0.0087-0.0173] unit decrease	Affymetrix [11514654] (imputed)	N
1246	chr9	86703560	86703561	rs10780649	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	9q21.32		rs10780649-?	NR	7E-25				NR [~ 8900000] (imputed)	N
1246	chr9	86707288	86707289	rs2378662	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	9q21.32		rs2378662-G	0.462	1E-16		0.01	[0.008-0.012] unit decrease	NR [NR] (imputed)	N
1246	chr9	86707288	86707289	rs2378662	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking initiation	842,717 European ancestry individuals	NA	9q21.32	LOC101927575	rs2378662-G		9E-9		0.98	[NR]	Affymetrix [up to 79000000] (imputed)	N
1246	chr9	86707288	86707289	rs2378662	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	9q21.32	NR	rs2378662-A	0.541	3E-13		0.00792101	[0.0058-0.01] unit increase	NR [9732723] (imputed)	N
1246	chr9	86707288	86707289	rs2378662	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	9q21.32	NR	rs2378662-A	0.541	3E-9		0.015212138	[0.01-0.02] unit increase	NR [~ 10000000] (imputed)	N
1246	chr9	86707288	86707289	rs2378662	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	9q21.32		rs2378662-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1246	chr9	86707288	86707289	rs2378662	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Menarche (age at onset)	76,831 European ancestry individuals	NA	9q21.32	RMI1, SLC28A3	rs2378662-?	NR	1E-11		0.03	[0.021-0.038] unit increase	Illumina [12039492]	N
1246	chr9	86708694	86708695	rs17086809	33045005	Vogelezang S	2020-10-12	PLoS Genet	Novel loci for childhood body mass index and shared heritability with adult cardiometabolic traits.	Childhood body mass index	39,620 European ancestry individuals	NA	9q21.32	RMI1	rs17086809-C?T	0.35	3E-6		0.038	[0.022-0.054] unit increase	Affymetrix, Illumina [8227808] (imputed)	N
1246	chr9	86714158	86714158	rs10693677	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	9q21.32		rs10693677-CTT	NR	1E-9		0.0117	[0.008-0.0154] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1246	chr9	86715565	86715566	rs7853970	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (age at voice breaking MTAG)	205,354 European ancestry individuals	NA	9q21.32		rs7853970-T	NR	7E-12		0.022323418	[0.016-0.029] years increase	NR [7400000] (imputed)	N
1246	chr9	86715565	86715566	rs7853970	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	9q21.32	NR	rs7853970-C	0.535	1E-10		0.0095043	[0.0066-0.0124] unit decrease	NR [9732723] (imputed)	N
1246	chr9	86715565	86715566	rs7853970	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	9q21.32	RMI1, NTRK2	rs7853970-T	0.47	2E-9		0.03	[0.02-0.04] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
1246	chr9	86728456	86728457	rs10780650	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	9q21.32	RMI1	rs10780650-T	0.3609	3E-10		0.016931811	[0.012-0.022] unit decrease	Affymetrix [~ 11515000] (imputed)	N
1246	chr9	86741460	86741461	rs13288553	23918034	Kuhnisch J	2013-08-07	Clin Oral Investig	Genome-wide association study (GWAS) for molar-incisor hypomineralization (MIH).	Molar-incisor hypomineralization	88 European ancestry cases, 580 European ancestry controls	NA	9q21.32	SLC28A3, RMI1	rs13288553-T	0.148	2E-6		4.25	[2.33-7.75]	Affymetrix [2013491] (imputed)	N
1246	chr9	86751791	86751792	rs10512144	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris color (L* coordinate)	329 South Asian ancestry individuals		9q21.32	intergenic	rs10512144-C	0.170433	5E-6		0.469306	[0.27-0.67] unit decrease	Illumina [640625] (imputed)	N
1246	chr9	86752640	86752641	rs2799849	30617275	Erzurumluoglu AM	2019-01-07	Mol Psychiatry	Meta-analysis of up to 622,409 individuals identifies 40 novel smoking behaviour associated genetic loci.	Smoking initiation	324,851 European ancestry individuals, 21,962 South Asian ancestry individuals	up to 275,596 European ancestry individuals	9q21.32	RMI1	rs2799849-C	0.22	2E-8		0.0156	[0.0097-0.0215] unit decrease (replication)	Affymetrix, Illumina [up to 1207583] (imputed)	N
1246	chr9	86755966	86755967	rs1030856	34754074	Grgic O	2021-11-09	Commun Biol	CYP11B1 variants influence skeletal maturation via alternative splicing.	Skeletal age	4,557 European, African, Asian and unknown ancestry individuals	NA	9q21.32		rs1030856-A	0.29	4E-7		0.12	[0.081-0.159] increase	Illumina [9806907] (imputed)	N
1246	chr9	86761744	86761745	rs1246265	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	9q21.32		rs1246265-T	0.305	4E-9		0.013	[0.0091-0.0169] unit decrease	Affymetrix [up to 90000000] (imputed)	N
1246	chr9	86761744	86761745	rs1246265	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	9q21.32	SLC28A3	rs1246265-T	0.3046	3E-11		0.015632885	[0.011-0.02] unit decrease	Affymetrix [11514654] (imputed)	N
1246	chr9	86761780	86761781	rs1246264	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	9q21.32	NA	rs1246264-T		1E-8		0.0111684	[0.0073-0.015] unit decrease	Illumina [13288253] (imputed)	N
1246	chr9	86761780	86761781	rs1246264	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking initiation (ever regular vs never regular)	up to 433,216 European ancestry individuals	NA	9q21.32	SLC28A3	rs1246264-C	0.695	5E-10		0.0154	[0.011-0.02] unit increase	Illumina [~ 250000] (imputed)	N
1247	chr9	86771160	86771161	rs12003072	25987507	Minica CC	2015-05-19	Behav Genet	Heritability, SNP- and Gene-Based Analyses of Cannabis Use Initiation and Age at Onset.	Cannabis use (age at onset)	5,148 European ancestry users	NA	9q21.32	NR	rs12003072-A		3E-7		0.52	[0.34-0.7] unit increase	NR [5896100] (imputed)	N
1247	chr9	86799428	86799429	rs2256039	27629089	Sailer A	2016-09-14	Neurology	A genome-wide association study in multiple system atrophy.	Multiple system atrophy	918 European ancestry cases, 3,864 European ancestry controls	NA	9q21.32	SLC28A3	rs2256039-C	0.14	8E-6		1.4285715		Illumina [4903804] (imputed)	N
1247	chr9	86882578	86882579	rs149470048	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9q21.32	NR	rs149470048-A	0.01045	3E-8	(CES2)	0.4072	NR unit increase	Illumina [1671387] (imputed)	N
1248	chr9	86907581	86907582	rs11568416	28234671	Nandakumar P	2017-07-01	J Hypertens	Rare coding variants associated with blood pressure variation in 15 914 individuals of African ancestry.	Systolic blood pressure	11,156 African American individuals, 4,758 African ancestry individuals	NA	9q21.32	SLC28A3	rs11568416-?	0.000189	9E-8		39.44	[24.98-53.9] unit increase	Illumina [105487]	N
1248	chr9	86915585	86915586	rs148429590	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9q21.33	NR	rs148429590-T	0.01742	2E-15	(USP5)	0.1988	NR unit increase	Illumina [1671387] (imputed)	N
1248	chr9	86917300	86917301	rs10868138	32595297	Kweon K	2018-04-01	Soa Chongsonyon Chongsin Uihak	Genome-Wide Analysis Reveals Four Novel Loci for Attention-Deficit Hyperactivity Disorder in Korean Youths.	Attention deficit hyperactivity disorder (inattention symptoms)	27 Korean ancestry child sibling pairs	NA	9q21.33	SLC28A3	rs10868138-C	0.093	7E-7				Affymetrix [432921]	N
1248	chr9	86922035	86922036	rs10123041	20339536	Barber MJ	2010-03-22	PLoS One	Genome-wide association of lipid-lowering response to statins in combined study populations.	Response to statin therapy	3,928 European ancestry individuals	NA	9q21.33	SLC28A3, RMI1, LOC729388	rs10123041-T	0.16	6E-6	(HDL, sum)			Illumina [~ 2500000] (imputed)	N
1248	chr9	86934729	86934730	rs10735568	31194736	Tiensuu H	2019-06-13	PLoS Genet	Risk of spontaneous preterm birth and fetal growth associates with fetal SLIT2.	Moderate-to-late spontaneous preterm birth	75 Finnish ancestry infant cases, 419 Finnish ancestry infant controls	NA	9q21.33	SLC28A3	rs10735568-?	NR	7E-6		2.173913		Illumina [6778521] (imputed)	N
1248	chr9	86936443	86936444	rs188502472	34411106	Liu C	2021-08-19	PLoS Genet	Genome scans of facial features in East Africans and cross-population comparisons reveal novel associations.	Facial morphology (segment 3)	2,595 Tanzanian ancestry individuals	NA	9q21.33		rs188502472-?	NR	2E-9				Illumina [NR] (imputed)	N
1248	chr9	86944424	86944425	rs12000457	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	9q21.33	SLC28A3	rs12000457-A	0.04	4E-6	(Sleep duration )	0.03	[NR] min/d increase	Illumina [899892]	N
1248	chr9	86964687	86964688	rs75360147	30487263	Pollack S	2018-11-28	Diabetes	Multiethnic Genome-wide Association Study of Diabetic Retinopathy using Liability Threshold Modeling of Duration of Diabetes and Glycemic Control.	Diabetic retinopathy (all NPDR and PDR)	1,079 European ancestry cases, 1,970 European ancestry controls, 911 African American cases, 941 African American controls	7,178 East Asian ancestry cases, 6,525 East Asian ancestry controls, 214 South East Asian ancestry cases, 557 South East Asian ancestry controls, 315 South Asian ancestry cases, 669 South Asian ancestry controls, 8,205 European ancestry cases, 7,713 European ancestry controls, 1,470 Hispanic cases, 1,240 Hispanic controls	9q21.33	SLC28A3	rs75360147-?	NR	2E-7	(AA)	2.17	[NR]	Affymetrix, Illumina [NR] (imputed)	N
1249	chr9	87152508	87152509	rs11140653	25760438	Anderson D	2015-03-11	PLoS One	First genome-wide association study in an Australian aboriginal population provides insights into genetic risk factors for body mass index and type 2 diabetes.	Body mass index	361 Martu Australian Aboriginal ancestry individuals	NA	9q21.33	NTRK2, SLC28A3	rs11140653-?	NR	3E-7		0.48	[0.30-0.66] unit increase	Illumina [1075436] (imputed)	N
1250	chr9	87174106	87174107	rs548944057	32238385	Nakayama A	2020-04-01	Ann Rheum Dis	Subtype-specific gout susceptibility loci and enrichment of selection pressure on ABCG2 and ALDH2 identified by subtype genome-wide meta-analyses of clinically defined gout patients.	Gout (normal type)	92 Japanese ancestry male cases, 4,554 Japanese ancestry male controls	NA	9q21.33	SLC28A3, NTRK2	rs548944057-T	0.046	3E-8		4.04	[2.47-6.62]	Illumina [7206774] (imputed)	N
1250	chr9	87186404	87186405	rs4877280	23192594	Velez Edwards DR	2012-11-29	Hum Genet	Gene-environment interactions and obesity traits among postmenopausal African-American and Hispanic women in the Women's Health Initiative SHARe Study.	Waist-to-hip circumference ratio (recreational physical activity interaction)	8,203 African American females, 3,484 Hispanic females	NA	9q21.33	SLC28A3, NTRK2	rs4877280-T	NR	9E-6		0.04	[NR] unit increase	Affymetrix [706791]	N
1250	chr9	87193523	87193524	rs144638058	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9q21.33	NR	rs144638058-C	0.02265	2E-8	(FGA)	0.2359	NR unit increase	Illumina [1671387] (imputed)	N
1250	chr9	87226087	87226088	rs1020120	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite concentrations in chronic kidney disease	1,143 European ancestry cases	NA	9q21.33	SLC28A3, NTRK2	rs1020120-T	NR	3E-9	(Histidine)	0.242898	[0.16-0.32] unit decrease	Illumina [up to 9281895] (imputed)	N
1250	chr9	87234110	87234111	rs10868215	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	9q21.33	SLC28A3, NTRK2	rs10868215-C	0.321	1E-8	(Japanese)	0.021	[0.013-0.029] unit decrease	Illumina [6108953] (imputed)	N
1250	chr9	87242551	87242552	rs148603475	33111402	Tan MMX	2020-10-28	Mov Disord	Genome-Wide Association Studies of Cognitive and Motor Progression in Parkinson's Disease.	Parkinson's disease progression (cognitive)	2,788 individuals	NA	9q21.33	NTRK2	rs148603475-T	NR	6E-6		0.31	[0.17-0.45] unit decrease	Illumina [5918868] (imputed)	N
1250	chr9	87275347	87275348	rs1147198	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	9q21.33	Intergenic	rs1147198-T	0.771	2E-8	(MTAG)	0.0109	[0.007-0.0148] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1250	chr9	87275894	87275895	rs1147199	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	9q21.33	SLC28A3, NTRK2	rs1147199-G	0.82	1E-9		0.019	[0.013-0.025] unit increase	Illumina [6108953] (imputed)	N
1250	chr9	87283030	87283031	rs1187321	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	9q21.33		rs1187321-A	NR	3E-12		0.0139	[0.01-0.0178] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1250	chr9	87285914	87285915	rs1187326	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	9q21.33	Intergenic	rs1187326-T	0.7728	4E-9	(MTAG)	0.0092	[0.0061-0.0123] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1250	chr9	87293456	87293457	rs1187352	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	9q21.33	NR	rs1187352-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1250	chr9	87293456	87293457	rs1187352	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	9q21.33		rs1187352-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1250	chr9	87293456	87293457	rs1187352	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	9q21.33	NA	rs1187352-T	0.3426	3E-11		0.012	[0.0085-0.0155] unit decrease	NR [~ 27400000] (imputed)	N
1251	chr9	87302195	87302196	rs1619120	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	9q21.33	NTRK2	rs1619120-A	0.399349	2E-8		0.00806432	[0.0053-0.0109] unit decrease	Affymetrix [12370749]	N
1251	chr9	87348214	87348215	rs6559823	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	9q21.33		rs6559823-G	0.874657	8E-9		0.0237186	[0.016-0.032] unit increase	Illumina [13479924] (imputed)	N
1251	chr9	87380672	87380673	rs77362122	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	9q21.33	NR	rs77362122-?	NR	7E-6	(EA)	0.4737	[0.27-0.68] unit increase	Illumina [up to 11892802] (imputed)	N
1251	chr9	87387621	87387622	rs1573219	31118516	Flannick J	2019-05-22	Nature	Exome sequencing of 20,791 cases of type 2 diabetes and 24,440 controls.	Type 2 diabetes	2,277 African American cases, 3,098 East Asian ancestry cases, 3,704 European ancestry cases, 6,215 Hispanic/Latino cases, 2,939 South Asian ancestry cases, 2,283 African American controls, 2,921 East Asian ancestry controls, 3,514 European ancestry controls, 5,939 Hispanic/Latino controls, 3,022 South Asian ancestry controls	NA	9q21.33	NTRK2	rs1573219-G	0.3	2E-7		1.1074197	NR	Affymetrix, Illumina [up to 35256845] (imputed)	N
1251	chr9	87416824	87416825	rs1187280	31748690	Purves KL	2019-11-20	Mol Psychiatry	A major role for common genetic variation in anxiety disorders.	Lifetime anxiety disorder	25,453 European ancestry cases, 58,113 European ancestry controls	6,524 cases, 24001 controls	9q21.33	NTRK2	rs1187280-G	0.88	7E-9	(EA)	0.13	[NR] unit increase	Illumina [NR] (imputed)	N
1252	chr9	87444057	87444058	rs11140773	31926635	Coleman JRI	2019-11-01	Biol Psychiatry	The Genetics of the Mood Disorder Spectrum: Genome-wide Association Analyses of More Than 185,000 Cases and 439,000 Controls.	Bipolar disorder or major depressive disorder	164,933 European ancestry major depressive disorder cases, 20,352 European ancestry bipolar disorder cases, 439,741 European ancestry controls	NA	9q21.33	NR	rs11140773-?	NR	6E-8				NR [NR] (imputed)	N
1252	chr9	87460981	87460982	rs117974869	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Yeast infection	52,218 European ancestry cases, 10,235 European ancestry controls	NA	9q21.33	NR	rs117974869-?	NR	7E-6		0.113	[0.064-0.162] unit increase	Illumina [at least 560000] (imputed)	N
1252	chr9	87499251	87499252	rs9314736	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Aspartate aminotransferase levels in excessive alcohol consumption	951 individuals	NA	9q21.33	NR	rs9314736-?	NR	3E-6		0.0138	[0.0079-0.0197] unit increase	Illumina [~ 7800000] (imputed)	N
1252	chr9	87514406	87514407	rs736744	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (genus Oxalobacter id.2978)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	9q21.33		rs736744-C	NR	3E-8		5.568141	z score increase	Affymetrix, Illumina [NR] (imputed)	N
1252	chr9	87514406	87514407	rs736744	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (family Oxalobacteraceae id.2966)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	9q21.33		rs736744-C	NR	1E-7		5.2532773	z score increase	Affymetrix, Illumina [NR] (imputed)	N
1252	chr9	87538595	87538596	rs2017441	34162658	Quinn MC	2021-06-23	Cancer Epidemiol Biomarkers Prev	Identification of a locus near ULK1 associated with progression-free survival in ovarian cancer.	Progression free survival in epithelial ovarian cancer	5,596 European ancestry individuals	NA	9q21.33	NR	rs2017441-A		8E-6		0.1133	[0.064-0.163] unit increase	Illumina [12770451] (imputed)	N
1253	chr9	87639847	87639848	rs2291506	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	9q21.33	Intergenic	rs2291506-A	0.4357	1E-9	(MTAG)	0.0109	[0.0074-0.0144] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1253	chr9	87639847	87639848	rs2291506	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	9q21.33	Intergenic	rs2291506-A	0.4357	2E-9		0.0119	[0.008-0.0158] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1254	chr9	87710865	87710866	rs7020497	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	9q21.33	NR	rs7020497-?	NR	3E-7				Affymetrix [NR]	N
1254	chr9	87765969	87765970	rs13301002	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	9q21.33	AGTPBP1	rs13301002-T	0.556	3E-8		0.0066	[0.0042-0.009] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
1254	chr9	87770926	87770927	rs12340987	24950379	Metrustry SJ	2014-06-20	Twin Res Hum Genet	Variants close to NTRK2 gene are associated with birth weight in female twins.	Birth weight	4,593 European ancestry female twins	3,033 European ancestry female twins, 1,418 European ancestry females, 1,579 European ancestry males	9q21.33	NTRK2	rs12340987-A	0.20	1E-8		0.13	[0.091-0.169] unit decrease	Illumina [up to 874733]	N
1254	chr9	87788418	87788419	rs117311461	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (underestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	9q21.33	NR	rs117311461-?	NR	3E-8		5.547	NR z score increase	Illumina [at least 830937] (imputed)	N
1254	chr9	87789919	87789920	rs717673	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	9q21.33	NR	rs717673-G	0.445	8E-6	(IFNgamma_ABC_of_monocytes)			Illumina [5084123] (imputed)	N
1255	chr9	87930044	87930045	rs2841498	20522523	Kasperaviciute D	2010-06-03	Brain	Common genetic variation and susceptibility to partial epilepsies: a genome-wide association study.	Partial epilepsies	Up to 3,445 European ancestry cases, 6,935 European ancestry controls	NA	9q21.33	AL354897.1	rs2841498-?	NR	4E-6				Illumina [528745]	N
1256	chr9	87997868	87997869	rs995698	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	9q21.33		rs995698-A	0.538	2E-12		0.0099	[0.0072-0.0126] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1256	chr9	87997868	87997869	rs995698	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	9q21.33	Intergenic	rs995698-A	0.538	9E-15	(MTAG)	0.0102	[0.0077-0.0127] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1256	chr9	87999369	87999370	rs921107	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	9q21.33		rs921107-A	0.538	3E-12	(conditional-joint)	0.0098	[0.0071-0.0125] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1256	chr9	87999369	87999370	rs921107	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	9q21.33	Intergenic	rs921107-A	0.5321	1E-8	(MTAG)	0.0131	[0.0086-0.0176] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1256	chr9	87999451	87999452	rs921106	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	9q21.33	NR	rs921106-?	NR	3E-7		5.108	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1256	chr9	88001471	88001472	rs2889964	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	9q21.33	STK33P1	rs2889964-?	NR	2E-8		0.011488603	[0.0075-0.0155] unit increase	NR [7306098]	N
1256	chr9	88006337	88006338	rs17425572	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	9q21.33		rs17425572-A	0.4403	7E-7		34.235767	z score increase	NR [6814003]	N
1256	chr9	88006337	88006338	rs17425572	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	9q21.33	STK33P1	rs17425572-G	0.4728	4E-10		0.012648552	[0.0087-0.0166] unit decrease	Affymetrix [up to 18485882] (imputed)	N
1256	chr9	88006337	88006338	rs17425572	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	9q21.33	STK33P1	rs17425572-A	NR	3E-10		0.0184279	[0.013-0.024] unit increase	Affymetrix [NR]	N
1256	chr9	88006337	88006338	rs17425572	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	9q21.33	NR	rs17425572-A	0.4601	1E-9		0.01351738	NR unit increase	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
1256	chr9	88007710	88007711	rs13291799	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	9q21.33	Intergenic	rs13291799-G	NR	1E-6	(men)	0.0214165	[0.013-0.03] unit increase	Illumina [13520550] (imputed)	N
1256	chr9	88010679	88010680	rs2593017	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	9q21.33	Intergenic	rs2593017-A	0.8503	5E-13	(MTAG)	0.0167	[0.012-0.021] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1256	chr9	88015038	88015039	rs2593014	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	9q21.33	Intergenic	rs2593014-G	0.2391	3E-9		0.0158	[0.011-0.021] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1257	chr9	88116373	88116374	rs117481717	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	9q21.33	NA	rs117481717-C		9E-9		0.050315	[0.033-0.067] unit decrease	Illumina [13288253] (imputed)	N
1258	chr9	88279627	88279628	rs77674461	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	9q21.33	NR	rs77674461-C	0.0358	6E-6	(EA)	0.0808	[0.046-0.116] unit increase	Illumina [~ 11800000] (imputed)	N
1259	chr9	88415759	88415760	rs73649983	31219150	Ekenberg C	2019-06-13	J Infect Dis	Single nucleotide polymorphisms in HLA alleles are associated with HIV-1 viral load in demographically diverse, ART-naive participants from the START trial.	Pre-treatment viral load in HIV-1 infection	1,398 European ancestry individuals, 572 Black individuals, 418 Hispanic individuals, 13 Asian ancestry individuals, 39 individuals	NA	9q21.33	intergenic	rs73649983-T	0.06	1E-15		0.43	[0.32-0.53] unit decrease	Affymetrix [339439]	N
1260	chr9	88540409	88540410	rs10512169	32439431	Simard M	2020-05-19	J Allergy Clin Immunol	Polygenic risk score for atopic dermatitis in the Canadian population.	Atopic dermatitis (moderate to severe)	222 South East Asian ancestry, East Asian ancestry, South Asian ancestry, African American or Afro-Caribbean, European ancestry, Greater Middle Eastern (Middle Eastern, North African or Persian) cases, 2,466 Greater Middle Eastern (Middle Eastern, North African or Persian), Hispanic or Latin American, NR moderate to severe atopic dermatitis cases, 2,466 South East Asian ancestry, East Asian ancestry, South Asian ancestry, African American or Afro-Caribbean, European ancestry, Greater Middle Eastern (Middle Eastern, North African or Persian) cases, 2,466 Greater Middle Eastern (Middle Eastern, North African or Persian), Hispanic or Latin American, NR controls without moderate to severe atopic dermatitis	NA	9q21.33		rs10512169-C	NR	2E-13	(general)			Illumina [5894709] (imputed)	N
1261	chr9	88693548	88693549	rs56353579	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Logical memory (delayed recall) in normal cognition	305 European ancestry cognitively normal individuals	NA	9q21.33	GOLM1, NAA35, C9orf153	rs56353579-A	0.03	2E-7		0.68	[0.43-0.93] unit increase	Illumina [7797256] (imputed)	N
1261	chr9	88721041	88721042	rs7854118	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	9q21.33	GOLM1	rs7854118-T	0.90265625	6E-11	(GOLM1, 8983_7_3)	0.26923954	[0.19-0.35] unit decrease	Illumina [> 1000000] (imputed)	N
1262	chr9	88844633	88844634	rs11141306	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota alpha diversity (Chao1 index)	1,068 Japanese ancestry individuals	NA	9q21.33	C9orf153	rs11141306-G	0.40	6E-6		33.1	[18.79-47.41] unit decrease	Illumina [6380737] (imputed)	N
1263	chr9	88870897	88870898	rs1547629	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	9q21.33		rs1547629-?	NR	2E-16				NR [~ 8900000] (imputed)	N
1263	chr9	88872038	88872039	rs6559921	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA		NA	rs6559921-A	0.7707	3E-8		0.0112	[0.0073-0.0151] unit increase	NR [~ 27400000] (imputed)	N
1263	chr9	88878372	88878372	rs34595852	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	9q21.33	RN7SKP264, C9orf153	rs34595852-ACT	0.656956	1E-9		0.01423933	[0.0096-0.0188] unit decrease	Affymetrix [93095623] (imputed)	N
1263	chr9	88878372	88878372	rs34595852	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	9q21.33	ISCA1	rs34595852-ACT	NR	4E-8		0.0228525	[0.015-0.031] unit decrease	Affymetrix [16832071] (imputed)	N
1263	chr9	88879524	88879525	rs1059144	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	9q21.33		rs1059144-G	0.37	8E-10		6.16	z score increase	Affymetrix [9061022] (imputed)	N
1263	chr9	88879524	88879525	rs1059144	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	9q21.33	NR	rs1059144-G	0.3429	5E-12				NR [9056863] (imputed)	N
1263	chr9	88886246	88886247	rs59614505	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	9q21.33	Intergenic	rs59614505-A	0.446	5E-10	(MTAG)	0.0112	[0.0077-0.0147] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1263	chr9	88886246	88886247	rs59614505	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	9q21.33	Intergenic	rs59614505-G	0.554	2E-10		0.0125	[0.0086-0.0164] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1263	chr9	88886512	88886513	rs117522510	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	9q21.33	NR	rs117522510-A	0.005686999999999998	7E-13		0.0395179	[0.029-0.05] unit increase	Affymetrix [16582909] (imputed)	N
1263	chr9	88886512	88886513	rs117522510	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	9q21.33	NR	rs117522510-A	0.005673999999999957	3E-8		0.0408565	[0.025-0.057] unit increase	Affymetrix [16585854] (imputed)	N
1263	chr9	88886512	88886513	rs117522510	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	9q21.33	NR	rs117522510-A	0.005686999999999998	2E-11		0.0411248	[0.029-0.053] unit increase	Affymetrix [16582965] (imputed)	N
1263	chr9	88886512	88886513	rs117522510	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	9q21.33	NR	rs117522510-A	0.005673999999999957	3E-9		0.0497809	[0.031-0.068] unit increase	Affymetrix [16585866] (imputed)	N
1263	chr9	88890114	88890115	rs1535758	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	9q21.33	ISCA1	rs1535758-A	0.656892	1E-12		0.016510988	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1263	chr9	88893890	88893891	rs2147064	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	9q21.33		rs2147064-C	0.37	2E-20		9.24	z score increase	Affymetrix [9061022] (imputed)	N
1263	chr9	88902662	88902663	rs7035034	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	9q21.33	NR	rs7035034-C	0.342228	9E-15		0.015384	[0.012-0.019] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
1263	chr9	88912764	88912765	rs12380880	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	9q21.33		rs12380880-T	NR	4E-8		0.0117	[0.0076-0.0158] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1263	chr9	88915565	88915566	rs4877313	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	9q21.33	NR	rs4877313-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
1263	chr9	88921289	88921290	rs7037424	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	9q21.33		rs7037424-?	NR	9E-10				NR [~ 8900000] (imputed)	N
1263	chr9	88934623	88934624	rs700760	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA		NR	rs700760-G	0.435693	3E-12				Affymetrix, Illumina [22063850] (imputed)	N
1263	chr9	88937616	88937617	rs700768	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA		ZCCHC6	rs700768-A	0.336498	4E-10		0.01483219	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
1263	chr9	88937616	88937617	rs700768	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA			rs700768-?	NR	7E-18				NR [~ 8900000] (imputed)	N
1263	chr9	88940358	88940359	rs41310053	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	9q21.33	NR	rs41310053-T	0.005689999999999973	4E-8		0.111733	[0.072-0.151] unit increase	Affymetrix [16577313] (imputed)	N
1263	chr9	88963007	88963008	rs17461620	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	9q21.33	ZCCHC6, ISCA1, LOC392358	rs17461620-A	0.157	5E-6		2.34	[1.61-3.41]	Illumina [1556551]	N
1263	chr9	88977838	88977839	rs12003569	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	9q21.33		rs12003569-G	0.37	3E-16		8.19	z score increase	Affymetrix [9061022] (imputed)	N
1263	chr9	88977838	88977839	rs12003569	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	9q21.33	NR	rs12003569-G	0.3414	3E-14				NR [9056863] (imputed)	N
1263	chr9	88978866	88978867	rs1593438	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	9q21.33	ZCCHC6	rs1593438-C	NR	4E-9		0.019106	[0.013-0.025] unit increase	Affymetrix [323123] (imputed)	N
1263	chr9	88980128	88980129	rs10868410	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	9q21.33	RP11-229M1.2	rs10868410-C	NR	2E-8		0.0181863	[0.012-0.024] unit increase	Affymetrix [323123] (imputed)	N
1263	chr9	88983079	88983080	rs979418	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9q21.33		rs979418-?	NR	8E-20				NR [~ 8900000] (imputed)	N
1264	chr9	89042603	89042604	rs354820	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	9q21.33	NR	rs354820-?	NR	7E-10				Affymetrix [~ 8270000] (imputed)	N
1264	chr9	89081585	89081586	rs460811	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	9q21.33	RNU2-36P	rs460811-A	0.4858	9E-7		0.0313	[0.019-0.044] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1264	chr9	89086063	89086064	rs1280779	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	9q21.33		rs1280779-C	NR	2E-33		0.0199	[0.017-0.023] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1264	chr9	89086277	89086278	rs750188	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	9q21.33		rs750188-?	NR	1E-11				NR [~ 8900000] (imputed)	N
1264	chr9	89089091	89089092	rs374017	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9q21.33		rs374017-?	NR	2E-53				NR [~ 8900000] (imputed)	N
1264	chr9	89100540	89100541	rs138322432	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	9q21.33	RNU2-36P	rs138322432-A	0.0158	5E-6		0.1353	[0.077-0.193] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1264	chr9	89107563	89107564	rs168493	26423011	Wain LV	2015-09-27	Lancet Respir Med	Novel insights into the genetics of smoking behaviour, lung function, and chronic obstructive pulmonary disease (UK BiLEVE): a genetic association study in UK Biobank.	Lung function in never smokers (high FEV1 vs average FEV1)	4,902 European ancestry individuals with high FEV1 measurements, 9,827 European ancestry individuals with average FEV1 measurements	NA	9q21.33	ZCCHC6, GAS1	rs168493-C	0.758	3E-7		1.1655011	[1.1-1.24]	Affymetrix [28509962] (imputed)	N
1264	chr9	89116627	89116628	rs8181166	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	9q21.33	intergenic	rs8181166-C	0.4997	9E-12		0.013	[0.0093-0.0167] unit increase	Affymetrix [18391927] (imputed)	N
1264	chr9	89116627	89116628	rs8181166	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	9q21.33	ZCCHC6	rs8181166-C	0.53	3E-12		0.026	[NR] unit increase	Affymetrix, Illumina [2834208] (imputed)	N
1265	chr9	89220366	89220367	rs558377214	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	9q21.33	RP11-395D3.1	rs558377214-A	0.0093	8E-6		0.2379	[0.13-0.34] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1265	chr9	89252705	89252706	rs10512176	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (multi-trait analysis)	90,939 European ancestry individuals	NA	9q21.33	ZCCHC6, GAS1	rs10512176-T	0.72	9E-10		0.0059	NR unit decrease	Affymetrix, Illumina [8002429] (imputed)	N
1265	chr9	89252705	89252706	rs10512176	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (adjusted for vertical disc diameter)	67,040 British ancestry individuals	NA	9q21.33	ZCCHC6, GAS1	rs10512176-T	0.72	8E-7		0.005	NR unit decrease	Affymetrix [at least 8002429] (imputed)	N
1265	chr9	89252705	89252706	rs10512176	31809533	Han X	2019-09-06	Hum Mol Genet	Genome-wide association analysis of 95 549 individuals identifies novel loci and genes influencing optic disc morphology.	Optic disc size	67,040 British ancestry individuals	28,509 European ancestry individuals	9q21.33	ZCCHC6	rs10512176-T	0.72	2E-14		0.02	unit decrease	Affymetrix [8928767] (imputed)	N
1266	chr9	89266317	89266318	rs112089283	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 1 levels	252 European ancestry individuals	NA	9q21.33		rs112089283-G	NR	9E-6		15.223	[8.64-21.81] unit increase	Illumina [NR] (imputed)	N
1266	chr9	89270922	89270923	rs10868456	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	9q21.33		rs10868456-A	0.38	6E-9		5.8	z score increase	Affymetrix [9061022] (imputed)	N
1266	chr9	89284877	89284878	rs56206573	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	9q21.33	intergenic	rs56206573-A	0.0181511120478324	3E-6	(G_unclassified_F_Erysipelotrichaceae_RNT)	0.490012	[0.28-0.7] unit decrease	Illumina [7711310] (imputed)	N
1266	chr9	89293643	89293644	rs59870127	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on Townsend deprivation index (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	9q21.33		rs59870127-?	NR	5E-8				NR [NR]	N
1266	chr9	89330164	89330165	rs10780783	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Unilateral cleft lip and palate	205 Asian ancestry cases, 315 European ancestry cases, 692 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	9q21.33	NR	rs10780783-?	NR	2E-6		0.67	[0.63-0.71]	Illumina [539000] (imputed)	N
1266	chr9	89331136	89331137	rs2378715	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	9q21.33		rs2378715-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1266	chr9	89334751	89334752	rs4878008	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	9q21.33	GAS1	rs4878008-C	0.614844	1E-13		0.0142311	[0.01-0.018] unit increase	NR [13737936] (imputed)	N
1266	chr9	89334751	89334752	rs4878008	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	9q21.33		rs4878008-?	NR	8E-14				NR [~ 8900000] (imputed)	N
1266	chr9	89334751	89334752	rs4878008	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	9q21.33		rs4878008-?	NR	9E-15		0.0161388	[0.012-0.02] unit increase	Affymetrix [20259828] (imputed)	N
1266	chr9	89336006	89336007	rs10868476	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	9q21.33		rs10868476-A	0.443248	2E-27		0.024486246	[0.02-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1266	chr9	89344436	89344437	rs1831149	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	9q21.33		rs1831149-G	0.440786	4E-11		0.014879455	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
1266	chr9	89344436	89344437	rs1831149	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	9q21.33		rs1831149-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1266	chr9	89371742	89371743	rs2274558	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	9q21.33	NR	rs2274558-T	0.582253	6E-12		0.01575574	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1266	chr9	89371742	89371743	rs2274558	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	9q21.33	NR	rs2274558-T	0.582249	2E-9		0.013697764	[0.0092-0.0182] unit decrease	Affymetrix [93095623] (imputed)	N
1266	chr9	89371742	89371743	rs2274558	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	9q21.33		rs2274558-T	0.582151	7E-21		0.021378385	[0.017-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1266	chr9	89371742	89371743	rs2274558	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	9q21.33		rs2274558-T	0.582157	2E-18		0.019982882	[0.016-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1266	chr9	89372068	89372068	rs58761416	27560520	Shaffer JR	2016-08-25	PLoS Genet	Genome-Wide Association Study Reveals Multiple Loci Influencing Normal Human Facial Morphology.	Facial depth	2,447 European ancestry individuals	671 European ancestry individuals	9q21.33	Intergenic	rs58761416-CT	0.244	6E-8	(Lower facial depth)	1.34	[0.74-1.94] unit increase	Illumina [34985077] (imputed)	N
1267	chr9	89398257	89398258	rs10780792	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	9q21.33	NR	rs10780792-?	NR	9E-7				Illumina [at least 7383741] (imputed)	N
1267	chr9	89436745	89436746	rs11141559	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	9q21.33	FLJ45537	rs11141559-?	NR	4E-6	(TAG 58:8)	0.2637382	[0.15-0.38] unit increase	Affymetrix [at least 2500000] (imputed)	N
1267	chr9	89439306	89439307	rs4878016	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	9q21.33	FLJ45537	rs4878016-?	NR	9E-6	(PC 38:4)	0.17058352	[0.095-0.246] unit increase	Affymetrix [at least 2500000] (imputed)	N
1268	chr9	89527457	89527458	rs11141597	23829686	Ding L	2013-07-05	Hum Genomics	Rank-based genome-wide analysis reveals the association of ryanodine receptor-2 gene variants with childhood asthma among human populations.	Asthma (childhood onset)	429 European ancestry affected offspring trios	52 African American affected offspring trios, 46 Hispanic affected offspring trios	9q21.33	intergenic	rs11141597-?	NR	2E-6				Affymetrix [786195]	N
1268	chr9	89531675	89531676	rs190029011	26606652	Alarcon-Riquelme ME	2015-11-25	Arthritis Rheumatol	Genome-Wide Association Study in an Amerindian Ancestry Population Reveals Novel Systemic Lupus Erythematosus Risk Loci and the Role of European Admixture.	Systemic lupus erythematosus	862 Native American ancestry-enriched North American cases, 531 Native American ancestry-enriched South American cases, 1,973 Native American ancestry-enriched North American controls, 344 Native American ancestry-enriched South American controls	NA	9q21.33	Intergenic	rs190029011-?	0.977	3E-6		2.857143	[1.85-4.35]	Illumina [580483] (imputed)	N
1268	chr9	89537927	89537928	rs1022994	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	9q21.33		rs1022994-A	0.49	1E-14		7.7	z score increase	Affymetrix [9061022] (imputed)	N
1268	chr9	89537927	89537928	rs1022994	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	9q21.33	NR	rs1022994-A	0.4991	6E-10				NR [9056863] (imputed)	N
1268	chr9	89558063	89558064	rs12350534	24578207	Opherk C	2014-02-27	Stroke	Genome-wide genotyping demonstrates a polygenic risk score associated with white matter hyperintensity volume in CADASIL.	White matter hyperintensity volume in cerebral autosomal-dominant arteriopathy with subcortical infarcts and leukoencephalopathy	466 European ancestry individuals	NA	9q21.33	NR	rs12350534-T	NR	4E-6		0.0447	[NR] unit increase	Affymetrix [583499]	N
1268	chr9	89562353	89562354	rs7859734	28632202	Witt SH	2017-06-20	Transl Psychiatry	Genome-wide association study of borderline personality disorder reveals genetic overlap with bipolar disorder, major depression and schizophrenia.	Borderline personality disorder	998 European ancestry cases, 1,545 European ancestry controls	NA	9q21.33	GAS1	rs7859734-C	0.6101	7E-6		1.3681762	[1.23-1.51]	Illumina [10736316] (imputed)	N
1268	chr9	89573082	89573083	rs9792548	21901158	Irvin MR	2011-08-25	PLoS One	Genome-wide detection of allele specific copy number variation associated with insulin resistance in African Americans from the HyperGEN study.	Insulin resistance/response	1,040 African American individuals	NA	9q21.33	GAS1	rs9792548-C	0.15	4E-6	(HOMA-IR)	12.0	[7.00 - 16.00] % decrease	Affymetrix [872243]	N
1269	chr9	89656518	89656519	rs78388617	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Subjective well-being	298,420 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	9q21.33	NR	rs78388617-T	0.085	4E-6		0.024449985	[0.014-0.035] unit decrease	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
1269	chr9	89672300	89672301	rs28786838	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	9q21.33	GAS1	rs28786838-A	0.9053125	2E-6	(GAS1, 5463_22_3)	0.1932237	[0.11-0.27] unit increase	Illumina [> 1000000] (imputed)	N
1269	chr9	89700719	89700720	rs13290575	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	9q21.33		rs13290575-?	NR	2E-13		0.0174596	[0.013-0.022] unit decrease	Affymetrix [20259828] (imputed)	N
1269	chr9	89718118	89718119	rs62561562	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	9q21.33	LOC494127	rs62561562-C	0.665938	4E-15		0.0154588	[0.012-0.019] unit decrease	NR [13737936] (imputed)	N
1269	chr9	89718118	89718119	rs62561562	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	9q21.33		rs62561562-?	NR	6E-17				NR [~ 8900000] (imputed)	N
1269	chr9	89753697	89753698	rs277735	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	9q21.33	C9orf170	rs277735-T	NR	3E-8		0.0157568	[0.01-0.021] unit increase	Affymetrix [321016] (imputed)	N
1269	chr9	89754216	89754217	rs278640	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	9q21.33	C9orf170	rs278640-T	NR	5E-9		0.0175312	[0.012-0.023] unit decrease	Affymetrix [321016] (imputed)	N
1270	chr9	89799500	89799501	rs277727	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	9q21.33		rs277727-A	0.562675	2E-10		0.0128995	[0.0089-0.0169] unit increase	Illumina [13479295] (imputed)	N
1270	chr9	89799500	89799501	rs277727	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	9q21.33	C9orf170, DAPK1	rs277727-?	NR	1E-12		0.020452866	[0.015-0.026] unit increase	Illumina [27896057] (imputed)	N
1270	chr9	89840456	89840457	rs764401	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9q21.33		rs764401-?	NR	2E-27				NR [~ 8900000] (imputed)	N
1270	chr9	89886036	89886037	rs12716653	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	9q21.33	intergenic	rs12716653-T	NR	6E-6	(AA)			Illumina [up to 11995908] (imputed)	N
1270	chr9	89886036	89886037	rs12716653	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	9q21.33	intergenic	rs12716653-T	NR	4E-6				Illumina [up to 11995908] (imputed)	N
1270	chr9	89888471	89888472	rs11141731	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	NA	9q21.33	C9orf170	rs11141731-C	0.772	1E-9		0.1258	[0.085-0.166] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1271	chr9	89916292	89916293	rs5898988	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	9q21.33		rs5898988-C	NR	4E-8		0.0132	[0.0085-0.0179] unit decrease	Affymetrix, Illumina [20538307] (imputed)	N
1271	chr9	90031668	90031669	rs1806864	20889312	Wang KS	2010-10-01	Schizophr Res	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	9q21.33	NR	rs1806864-?	NR	1E-6		1.4392	[NR]	Affymetrix [722112]	N
1272	chr9	90047831	90047832	rs12005482	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	9q21.33	NR	rs12005482-?	NR	4E-6		4.627	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1272	chr9	90084151	90084152	rs117795020	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-13 levels	3,557 Finnish ancestry individuals	NA	9q21.33	NR	rs117795020-G		1E-6		0.3522	[0.21-0.49] SD units increase	NR [10700000] (imputed)	N
1272	chr9	90148820	90148821	rs2008677	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	9q21.33		rs2008677-A	0.32	7E-9		5.8	z score increase	Affymetrix [9061022] (imputed)	N
1272	chr9	90155925	90155926	rs4878099	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 52)	19,670 European ancestry individuals	NA	9q21.33		rs4878099-?	NR	2E-8				NR [9705931] (imputed)	N
1272	chr9	90159312	90159313	rs1421001	24684796	Cox AJ	2014-03-11	Neurobiol Aging	Heritability and genetic association analysis of cognition in the Diabetes Heart Study.	Cognitive function	423 type 2 diabetes cases and 127 unaffected siblings from 257 families	NA	9q21.33	DAPK1	rs1421001-A	0.214	4E-6	(DSST)	4.3211	[2.49-6.15] unit increase	Affymetrix [> 371951] (imputed)	N
1272	chr9	90160564	90160565	rs10868622	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	9q21.33		rs10868622-A	0.42	2E-11		6.67	z score increase	Affymetrix [9061022] (imputed)	N
1272	chr9	90160564	90160565	rs10868622	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	9q21.33	NR	rs10868622-A	0.4317	5E-10				NR [9056863] (imputed)	N
1272	chr9	90161669	90161670	rs6559998	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	9q21.33	DAPK1	rs6559998-C	0.388488084227391	3E-7	(F_Rhodospirillaceae_RNT)	0.181453	[0.11-0.25] unit increase	Illumina [7711310] (imputed)	N
1272	chr9	90161669	90161670	rs6559998	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	9q21.33	DAPK1	rs6559998-C	0.388053247268619	3E-8	(O_Rhodospirillales_RNT)	0.194601	[0.13-0.26] unit increase	Illumina [7711310] (imputed)	N
1272	chr9	90177520	90177521	rs184522131	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	9q21.33	DAPK1	rs184522131-G	1.0	4E-6	(AA)	0.513	unit increase	Illumina [NR] (imputed)	N
1273	chr9	90207625	90207626	rs36206051	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	9q21.33	DAPK1, DAPK1-IT1, CTSL1, CTSL3	rs36206051-T	NR	5E-6	(sleep onset irregularity)	0.09129	[0.052-0.13] unit increase	Affymetrix [7141204] (imputed)	N
1273	chr9	90209136	90209137	rs3095748	22610502	Kennedy RB	2012-05-19	Hum Genet	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IFN-alpha)	Up to 512 European ancestry individuals, up to 199 African American individuals	NA	9q21.33	DAPK1	rs3095748-G		5E-7	(AA)			Illumina [NR]	N
1273	chr9	90235793	90235794	rs11141915	34162658	Quinn MC	2021-06-23	Cancer Epidemiol Biomarkers Prev	Identification of a locus near ULK1 associated with progression-free survival in ovarian cancer.	Progression free survival in serous epithelial ovarian cancer treated with carboplatin and paclitaxel	1,751 European ancestry individuals	NA	9q21.33	NR	rs11141915-A		1E-6		0.239	[0.14-0.34] unit decrease	Illumina [12759548] (imputed)	N
1273	chr9	90235793	90235794	rs11141915	34162658	Quinn MC	2021-06-23	Cancer Epidemiol Biomarkers Prev	Identification of a locus near ULK1 associated with progression-free survival in ovarian cancer.	Progression free survival in epithelial ovarian cancer treated with carboplatin and paclitaxel	2,352 European ancestry individuals	NA	9q21.33	NR	rs11141915-A		7E-6		0.2	[0.11-0.29] unit decrease	Illumina [12764477] (imputed)	N
1273	chr9	90235793	90235794	rs11141915	22293537	Kiyotani K	2012-01-29	Pharmacogenet Genomics	A genome-wide association study identifies four genetic markers for hematological toxicities in cancer patients receiving gemcitabine therapy.	Response to gemcitabine in pancreatic cancer	21 Japanese ancestry adverse reaction cases, 58 Japanese ancestry non-adverse reaction individuals	33 Japanese ancestry adverse reaction cases, 62 Japanese ancestry non-adverse reaction individuals	9q21.33	DAPK1	rs11141915-T	0.62	1E-6	(Allelic)	4.1	[2.21-7.62]	Illumina [470064]	N
1273	chr9	90261694	90261695	rs3118867	24954895	Simino J	2014-06-19	Am J Hum Genet	Gene-age interactions in blood pressure regulation: a large-scale investigation with the CHARGE, Global BPgen, and ICBP Consortia.	Blood pressure	55,796 European ancestry individuals	43,445 European ancestry individuals, 1,849 Chinese ancestry individuals, 2,502 Malay ancestry individuals, 2,476 Asian Indian ancestry individuals, 1,855 Asian ancestry individuals	9q21.33	DAPK1	rs3118867-G	0.47	7E-6	(EA, MAP, Age 50-59)	0.39	[0.21-0.57] mmHg decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1273	chr9	90261694	90261695	rs3118867	24954895	Simino J	2014-06-19	Am J Hum Genet	Gene-age interactions in blood pressure regulation: a large-scale investigation with the CHARGE, Global BPgen, and ICBP Consortia.	Blood pressure	55,796 European ancestry individuals	43,445 European ancestry individuals, 1,849 Chinese ancestry individuals, 2,502 Malay ancestry individuals, 2,476 Asian Indian ancestry individuals, 1,855 Asian ancestry individuals	9q21.33	DAPK1	rs3118867-G	0.47	4E-7	(EA, MAP, Age 50-59)	0.55	[0.33-0.77] mmHg decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1273	chr9	90261694	90261695	rs3118867	24954895	Simino J	2014-06-19	Am J Hum Genet	Gene-age interactions in blood pressure regulation: a large-scale investigation with the CHARGE, Global BPgen, and ICBP Consortia.	Blood pressure	55,796 European ancestry individuals	43,445 European ancestry individuals, 1,849 Chinese ancestry individuals, 2,502 Malay ancestry individuals, 2,476 Asian Indian ancestry individuals, 1,855 Asian ancestry individuals	9q21.33	DAPK1	rs3118867-G	0.47	4E-7	(EA, DBP, Age 50-59)	0.49	[0.31-0.67] mmHg decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1273	chr9	90295569	90295570	rs10117922	30557369	Yodsurang V	2018-12-17	PLoS One	Genome-wide association study (GWAS) of ovarian cancer in Japanese predicted regulatory variants in 22q13.1.	Ovarian cancer	681 Japanese ancestry cases, 17,492 Japanese ancestry controls	NA	9q21.33	DAPK1	rs10117922-A	0.325	7E-6		1.3351135	[1.18-1.51]	Illumina [7521072] (imputed)	N
1274	chr9	90342674	90342675	rs2274611	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Cathepsin L1 levels	21,758 European ancestry individuals	9,173 individuals	9q21.33		rs2274611-T	0.44	2E-42		0.1129	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1274	chr9	90359961	90359962	rs12002901	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	9q21.33	Intergenic	rs12002901-T	NR	8E-6		0.0425566	[0.024-0.061] unit decrease	Illumina [13520550] (imputed)	N
1274	chr9	90364555	90364556	rs17053424	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Stappia abundance in stool	5,959 Finnish ancestry individuals	NA	9q21.33		rs17053424-G	0.0407613	1E-8		0.0689806	[0.045-0.093] unit decrease	Illumina [7980478] (imputed)	N
1274	chr9	90410221	90410222	rs12339094	24665060	Argos M	2014-03-24	J Med Genet	Genome-wide association study of smoking behaviours among Bangladeshi adults.	Smoking quantity	1,837 Bangladeshi ancestry males, 198 Bangladeshi ancestry females	NA	9q21.33	NR	rs12339094-?		3E-6				Illumina [1211988] (imputed)	N
1275	chr9	90457589	90457590	rs149736440	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	9q22.1		rs149736440-T	NR	2E-8		0.0967	[0.063-0.131] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
1275	chr9	90457589	90457590	rs149736440	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	145,445 East Asian ancestry individuals	NA	9q22.1		rs149736440-T	0.010664	2E-8		0.0967411	[0.063-0.131] unit decrease	Illumina [13477769] (imputed)	N
1275	chr9	90474945	90474946	rs6560039	26219847	Adams HH	2015-07-28	J Gerontol A Biol Sci Med Sci	Heritability and Genome-Wide Association Analyses of Human Gait Suggest Contribution of Common Variants.	Gait variability	2,946 individuals	NA	9q22.1	XXyac-YM21GA2.4	rs6560039-T	0.22	2E-7	(stride length SD)	0.23	[0.14-0.32] unit decrease	Illumina [6200000] (imputed)	N
1275	chr9	90504713	90504714	rs73653973	31296530	Trendowski MR	2019-07-11	Clin Cancer Res	Clinical and Genome-Wide Analysis of Serum Platinum Levels after Cisplatin-Based Chemotherapy.	Serum platinum levels after completion of cisplatin chemotherapy	866 European ancestry individuals, 17 non-European ancestry individuals, 127 individuals	NR	9q22.1	NR	rs73653973-T	0.0425	9E-6		0.3189	[0.18-0.46] unit increase	Illumina [7305641] (imputed)	N
1275	chr9	90511445	90511446	rs140327228	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body fat mass	3,399 whole genome sequenced individuals, 11,802 European ancestry individuals	10,670 European ancestry individuals	9q22.1	SPATA31E1	rs140327228-A	0.9861	4E-6		0.2596	[0.15-0.37] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1275	chr9	90535163	90535164	rs185071524	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9q22.1	NR	rs185071524-T	0.01045	2E-8	(ORM1)	0.9027	NR unit increase	Illumina [1671387] (imputed)	N
1275	chr9	90535163	90535164	rs185071524	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9q22.1	NR	rs185071524-T	0.01045	1E-9	(SERPINA3)	0.2632	NR unit increase	Illumina [1671387] (imputed)	N
1276	chr9	90609103	90609104	rs549853	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9q22.1		rs549853-?	NR	1E-15				NR [~ 8900000] (imputed)	N
1276	chr9	90671188	90671189	rs79516263	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Lateral ventricle temporal horn volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	9q22.1	LOC101927680	rs79516263-?		3E-7				Illumina [4322238] (imputed)	N
1276	chr9	90689209	90689210	rs11142081	30277614	Carlson JC	2018-09-11	Genet Epidemiol	Genome-wide interaction studies identify sex-specific risk alleles for nonsyndromic orofacial clefts.	Nonsyndromic cleft lip with or without cleft palate x sex interaction (2df test)	1,293 male cases, 849 female cases, 713 male controls, 987 female controls	NA	9q22.1	SPATA31C2	rs11142081-T	0.137	2E-6				Illumina [up to 34985077] (imputed)	N
1277	chr9	90802720	90802721	rs7865433	34130359	Curtis SW	2021-06-15	Genet Epidemiol	FAT4 identified as a potential modifier of orofacial cleft laterality.	Right unilateral cleft lip and palate	59 Asian ancestry cases, 94 European ancestry cases, 263 Hispanic cases, 1,626 controls	NA	9q22.1	NR	rs7865433-?		9E-6		1.54	[1.27-1.87]	Illumina [539473] (imputed)	N
1277	chr9	90811181	90811182	rs2814828	18391951	Gudbjartsson DF	2008-04-06	Nat Genet	Many sequence variants affecting diversity of adult human height.	Height	30,968 European ancestry individuals	8,541 European ancestry individuals	9q22.1	CCRK, SPIN1	rs2814828-T	0.25	9E-7		5.4	[3.24-7.56] % s.d. increase	Affymetrix, Illumina [up to 304226]	N
1277	chr9	90826252	90826253	rs7031417	26081443	Adkins DE	2015-06-17	Twin Res Hum Genet	Genome-Wide Meta-Analysis of Longitudinal Alcohol Consumption Across Youth and Early Adulthood.	Longitudinal alcohol consumption	2,126 adolescents and early adults	NA	9q22.1	LOC100129340	rs7031417-C	0.07	1E-8	(mean)	5.68	z-score decrease	Illumina [866099] (imputed)	N
1277	chr9	90831331	90831332	rs17053965	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Pursuit maintenance gain	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	9q22.1	SPATA31C2	rs17053965-C	0.05312	6E-7	(African)			Illumina [4404269] (imputed)	N
1278	chr9	90835588	90835589	rs2578246	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	9q22.1	RP11-1E11.2	rs2578246-G	NR	4E-8		0.0195582	[0.013-0.027] unit increase	Affymetrix [321016] (imputed)	N
1278	chr9	90835588	90835589	rs2578246	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	9q22.1	RP11-1E11.2	rs2578246-G	NR	2E-8		0.0218819	[0.014-0.03] unit increase	Affymetrix [323123] (imputed)	N
1278	chr9	90835725	90835726	rs2778031	25854761	Zuo X	2015-04-09	Nat Commun	Whole-exome SNP array identifies 15 new susceptibility loci for psoriasis.	Psoriasis	11,245 Han Chinese ancestry cases, 11,177 Han Chinese ancestry controls	6,369 Han Chinese ancestry cases, 13,969 Han Chinese ancestry controls	9q22.1	intergenic	rs2778031-A	NR	1E-36	(fixed)	1.2128562		Illumina [87827]	N
1278	chr9	90835725	90835726	rs2778031	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	9q22.1	SPIN1	rs2778031-T	0.24	9E-13		0.031	[NR] unit increase	Affymetrix, Illumina [2834208] (imputed)	N
1278	chr9	90838790	90838791	rs10868728	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	9q22.1	RP11-1E11.2	rs10868728-G	NR	2E-11		0.0221723	[0.016-0.029] unit increase	Affymetrix [321016] (imputed)	N
1278	chr9	90838790	90838791	rs10868728	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	9q22.1	RP11-1E11.2	rs10868728-G	NR	5E-11		0.0235448	[0.017-0.031] unit increase	Affymetrix [323123] (imputed)	N
1278	chr9	90847355	90847356	rs1550286	29489655	Liu X	2018-03-01	Medicine (Baltimore)	Genome-wide association study of maternal genetic effects and parent-of-origin effects on food allergy.	Egg allergy (parent-of-origin effect)	169 European ancestry trios, 5 European ancestry father-child pairs, 19 European ancestry mother-child pairs, 8 European ancestry affected child	NA	9q22.1	LOC100129340, RPSAP49	rs1550286-?	NR	8E-6				Illumina [NR]	N
1278	chr9	90848871	90848872	rs10780909	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	9q22.1	RP11-1E11.2	rs10780909-A	NR	2E-8		0.0173148	[0.011-0.023] unit increase	Affymetrix [321016] (imputed)	N
1278	chr9	90852609	90852610	rs734765	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	9q22.1	RP11-1E11.2	rs734765-C	NR	4E-12		0.0239063	[0.017-0.031] unit increase	Affymetrix [321016] (imputed)	N
1278	chr9	90852609	90852610	rs734765	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	9q22.1	RP11-1E11.2	rs734765-C	NR	1E-14		0.0290154	[0.022-0.036] unit increase	Affymetrix [323123] (imputed)	N
1278	chr9	90865567	90865568	rs7023044	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	9q22.1		rs7023044-T	NR	2E-9		0.0105	[0.0072-0.0138] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1278	chr9	90868118	90868119	rs7860296	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	9q22.1	RP11-1E11.2	rs7860296-C	NR	3E-11		0.0204392	[0.014-0.026] unit increase	Affymetrix [321016] (imputed)	N
1278	chr9	90869766	90869767	rs10124620	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	9q22.1	RP11-1E11.2	rs10124620-C	NR	4E-17		0.0264899	[0.02-0.033] unit increase	Affymetrix [323123] (imputed)	N
1278	chr9	90873652	90873653	rs10746837	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	9q22.1		rs10746837-A	NR	6E-48		0.0214	[0.018-0.024] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1278	chr9	90873652	90873653	rs10746837	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	9q22.1		rs10746837-A	0.127792	3E-10		0.0190576	[0.013-0.025] unit decrease	Illumina [13479295] (imputed)	N
1278	chr9	90873652	90873653	rs10746837	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	9q22.1	RP11-350G13.1	rs10746837-G	NR	5E-18		0.0247884	[0.019-0.03] unit increase	Affymetrix [321016] (imputed)	N
1278	chr9	90873652	90873653	rs10746837	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9q22.1		rs10746837-?	NR	3E-63				NR [~ 8900000] (imputed)	N
1278	chr9	90879920	90879921	rs1887387	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	9q22.1	RP11-350G13.1	rs1887387-T	NR	3E-8		0.0190015	[0.012-0.026] unit increase	Affymetrix [323123] (imputed)	N
1278	chr9	90882057	90882058	rs2083197	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	9q22.1	SPATA31C2, SPIN1	rs2083197-?	NR	1E-10		0.02755635	[0.019-0.036] unit decrease	Illumina [27896057] (imputed)	N
1278	chr9	90883629	90883630	rs10746839	25854761	Zuo X	2015-04-09	Nat Commun	Whole-exome SNP array identifies 15 new susceptibility loci for psoriasis.	Psoriasis	11,245 Han Chinese ancestry cases, 11,177 Han Chinese ancestry controls	6,369 Han Chinese ancestry cases, 13,969 Han Chinese ancestry controls	9q22.1	intergenic	rs10746839-A		5E-6	(fixed)	1.11		Illumina [87827]	N
1278	chr9	90955769	90955770	rs66492604	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	9q22.1	NR	rs66492604-C	NR	2E-9		0.0211	[0.014-0.028] unit increase	Affymetrix [9000000] (imputed)	N
1278	chr9	90960025	90960026	rs10868758	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	9q22.1		rs10868758-C	NR	3E-9		0.0164	[0.011-0.022] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
1279	chr9	90971990	90971991	rs55659150	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	9q22.1		rs55659150-?	NR	6E-9		0.0194261	[0.013-0.026] unit increase	Affymetrix [20259828] (imputed)	N
1279	chr9	90973035	90973036	rs11142263	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	9q22.1		rs11142263-?	NR	6E-9				NR [~ 8900000] (imputed)	N
1279	chr9	91008590	91008591	rs150295122	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9q22.1		rs150295122-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1280	chr9	91148466	91148467	rs147482387	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	9q22.1	NXNL2	rs147482387-A	0.0102243790324591	8E-6	(G_Sporobacter_HB)	1.45074	[0.81-2.09] unit decrease	Illumina [7711310] (imputed)	N
1280	chr9	91191087	91191088	rs190426846	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Myringotomy	4,138 European ancestry cases, 85,089 European ancestry controls	NA	9q22.1	NR	rs190426846-?	NR	5E-6		3.0544	[0.85-5.26] unit decrease	Illumina [at least 560000] (imputed)	N
1281	chr9	91250618	91250619	rs7468826	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	9q22.1	NR	rs7468826-C	0.491	7E-9		0.00644947	[0.0043-0.0086] unit increase	NR [9732723] (imputed)	N
1281	chr9	91260561	91260562	rs17054265	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	9q22.1	LOC286238	rs17054265-A	0.17	4E-6	(Gestational age )	0.05	[NR] wk increase	Illumina [899892]	N
1281	chr9	91300785	91300786	rs117767021	28762467	Wadelius M	2017-08-01	Clin Pharmacol Ther	Sulfasalazine-Induced Agranulocytosis Is Associated With the Human Leukocyte Antigen Locus.	Sulfasalazine-induced agranulocytosis	36 European ancestry cases, 5,170 European ancestry untreated controls	NA	9q22.1	intergenic	rs117767021-?	NR	3E-7		10.78	[4.35-26.68]	Illumina [9380034] (imputed)	N
1282	chr9	91392686	91392688	rs142550358	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	9q22.1		rs142550358-T	NR	8E-40		0.0687	[0.059-0.079] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1282	chr9	91392686	91392688	rs142550358	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	9q22.1		rs142550358-T	NR	1E-23		0.0535	[0.043-0.064] unit increase	Affymetrix, Illumina [20536605] (imputed)	N
1282	chr9	91392686	91392688	rs142550358	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	9q22.1		rs142550358-T	NR	2E-38		0.0695	[0.059-0.08] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
1282	chr9	91392686	91392688	rs142550358	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	9q22.1		rs142550358-T	NR	2E-99		0.1096	[0.099-0.12] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
1282	chr9	91392686	91392688	rs142550358	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	9q22.1	NR	rs142550358-T	0.053916	2E-55		0.079355665	[0.069-0.089] unit increase	Affymetrix [93095623] (imputed)	N
1282	chr9	91392686	91392688	rs142550358	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	9q22.1	NR	rs142550358-T	0.053914	7E-57		0.08036664	[0.07-0.09] unit increase	Affymetrix [93095623] (imputed)	N
1282	chr9	91392686	91392688	rs142550358	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	9q22.1		rs142550358-T	0.054014	1E-88		0.102259986	[0.092-0.112] unit decrease	Affymetrix [93095623] (imputed)	N
1282	chr9	91392686	91392688	rs142550358	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	9q22.1		rs142550358-T	0.05402	8E-31		0.05859698	[0.049-0.069] unit increase	Affymetrix [93095623] (imputed)	N
1282	chr9	91392686	91392688	rs142550358	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	9q22.1		rs142550358-T	0.054026	9E-58		0.08064774	[0.071-0.091] unit decrease	Affymetrix [93095623] (imputed)	N
1282	chr9	91392686	91392688	rs142550358	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	9q22.1		rs142550358-T	0.053964	5E-36		0.062526144	[0.053-0.072] unit increase	Affymetrix [93095623] (imputed)	N
1282	chr9	91392686	91392688	rs142550358	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	9q22.1		rs142550358-T	0.053944	2E-16		0.04194189	[0.032-0.052] unit decrease	Affymetrix [93095623] (imputed)	N
1282	chr9	91392686	91392688	rs142550358	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	9q22.1		rs142550358-T	0.0539269999999999	3E-116		0.1154298	[0.11-0.13] unit decrease	Affymetrix [93095623] (imputed)	N
1282	chr9	91392686	91392688	rs142550358	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	9q22.1		rs142550358-T	0.053978	1E-18		0.0420746	[0.033-0.051] unit decrease	Affymetrix [93095623] (imputed)	N
1282	chr9	91392686	91392688	rs142550358	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	9q22.1		rs142550358-T	0.053988	2E-53		0.0773566	[0.068-0.087] unit increase	Affymetrix [93095623] (imputed)	N
1282	chr9	91392686	91392688	rs142550358	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	9q22.1		rs142550358-T	0.053957	1E-30		0.057361275	[0.048-0.067] unit decrease	Affymetrix [93095623] (imputed)	N
1282	chr9	91392686	91392688	rs142550358	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	9q22.1		rs142550358-T	0.053971	4E-58		0.08017089	[0.07-0.09] unit decrease	Affymetrix [93095623] (imputed)	N
1282	chr9	91392686	91392688	rs142550358	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	9q22.1		rs142550358-T	0.0539190000000001	1E-32		0.059931	[0.05-0.07] unit increase	Affymetrix [93095623] (imputed)	N
1282	chr9	91392686	91392688	rs142550358	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	9q22.1		rs142550358-T	0.053922	2E-34		0.061502304	[0.052-0.071] unit increase	Affymetrix [93095623] (imputed)	N
1282	chr9	91392686	91392688	rs142550358	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	9q22.1	intergenic	rs142550358-T	0.0545	9E-11		0.05154849	[0.036-0.067] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1282	chr9	91392686	91392688	rs142550358	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	9q22.1	intergenic	rs142550358-T	0.0546	1E-38		0.1064998	[0.09-0.123] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1282	chr9	91392686	91392688	rs142550358	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	9q22.1	intergenic	rs142550358-T	0.0545	4E-22		0.07898518	[0.063-0.095] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1282	chr9	91392686	91392688	rs142550358	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin concentration	172,851 European ancestry individuals	NA	9q22.1	intergenic	rs142550358-T	0.0544	1E-17		0.0665778	[0.051-0.082] unit increase	Affymetrix [~ 2500000] (imputed)	N
1282	chr9	91392686	91392688	rs142550358	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	9q22.1	intergenic	rs142550358-T	0.0544	7E-18		0.06957545	[0.054-0.085] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1282	chr9	91393397	91393398	rs56225686	33385171	Hagg S	2020-12-31	Hum Genet	Deciphering the genetic and epidemiological landscape of mitochondrial DNA abundance.	Mitochondrial DNA levels	295,150 European ancestry individuals	NA	9q22.1	NR	rs56225686-A	0.0507	2E-9		0.0323089	[0.022-0.043] unit decrease	Affymetrix [3505788] (imputed)	N
1282	chr9	91396591	91396592	rs62549698	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q22.1	NR	rs62549698-G	0.938788	1E-13				Affymetrix, Illumina [17210439] (imputed)	N
1282	chr9	91396591	91396592	rs62549698	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	9q22.1	NR	rs62549698-G	0.937106	2E-15		0.031801	[0.024-0.04] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1282	chr9	91397957	91397958	rs73652622	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	9q22.1	intergenic	rs73652622-G	0.0641	8E-19		0.0654877	[0.051-0.08] unit increase	Affymetrix [~ 2500000] (imputed)	N
1282	chr9	91397957	91397958	rs73652622	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	9q22.1	intergenic	rs73652622-G	0.0641	1E-20		0.06874303	[0.054-0.083] unit increase	Affymetrix [~ 2500000] (imputed)	N
1282	chr9	91397957	91397958	rs73652622	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	9q22.1	intergenic	rs73652622-G	0.0641	2E-10		0.04696628	[0.032-0.061] unit increase	Affymetrix [~ 2500000] (imputed)	N
1282	chr9	91397957	91397958	rs73652622	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	9q22.1	intergenic	rs73652622-G	0.0641	3E-11		0.04914156	[0.035-0.064] unit increase	Affymetrix [~ 2500000] (imputed)	N
1282	chr9	91406123	91406124	rs62550974	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	9q22.1		rs62550974-A	0.063407	2E-13		0.03395193	[0.025-0.043] unit decrease	Affymetrix [93095623] (imputed)	N
1282	chr9	91408131	91408132	rs62550975	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q22.1	NR	rs62550975-G	0.0612354	1E-53				Affymetrix, Illumina [21126107] (imputed)	N
1282	chr9	91408131	91408132	rs62550975	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	9q22.1	NR	rs62550975-G	0.06292	7E-57		0.065596	[0.058-0.074] SD unit increase	Affymetrix, Illumina [50282193] (imputed)	N
1282	chr9	91413551	91413552	rs7037966	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	9q22.1		rs7037966-G	0.633177	2E-9		0.0209241	[0.014-0.028] unit decrease	Illumina [13478928] (imputed)	N
1282	chr9	91418741	91418742	rs17054506	29855537	Hirata T	2018-05-31	Sci Rep	Japanese GWAS identifies variants for bust-size, dysmenorrhea, and menstrual fever that are eQTLs for relevant protein-coding or long non-coding RNAs.	Menstruation quality of life impact (aggressiveness)	899 Japanese ancestry female cases, 4,835 Japanese ancestry female controls	1,030 Japanese ancestry female cases, 4,584 Japanese ancestry female controls	9q22.1	NR	rs17054506-C	0.563352667	7E-6		0.1610547	[0.091-0.231] unit decrease	Affymetrix [536506]	N
1282	chr9	91426716	91426717	rs1288649	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	9q22.1		rs1288649-G	0.613026	1E-9		0.014462992	[0.0098-0.0191] unit decrease	Affymetrix [93095623] (imputed)	N
1282	chr9	91427887	91427888	rs35554486	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	9q22.1	NR	rs35554486-T	0.180911	8E-11		0.019391874	[0.014-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1282	chr9	91429494	91429495	rs1288650	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	9q22.1		rs1288650-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1282	chr9	91453630	91453631	rs9410380	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	9q22.1	intergenic	rs9410380-C	0.5097	9E-44		0.04962718	[0.043-0.057] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1282	chr9	91472126	91472127	rs10780209	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	9q22.1		rs10780209-A	NR	5E-80		0.0414	[0.037-0.046] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
1282	chr9	91472126	91472127	rs10780209	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	9q22.1		rs10780209-A	0.477086	5E-24		0.026696682	[0.022-0.032] unit increase	Affymetrix [93095623] (imputed)	N
1282	chr9	91472126	91472127	rs10780209	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q22.1	NR	rs10780209-A	0.538946	8E-134				Affymetrix, Illumina [23467995] (imputed)	N
1282	chr9	91472126	91472127	rs10780209	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	9q22.1	NR	rs10780209-A	0.479354	6E-131		0.045431	[0.042-0.049] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
1282	chr9	91476599	91476600	rs2316806	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Platelet count	108,208 Japanese ancestry individuals	NA	9q22.1	MIR4289, C9orf47	rs2316806-?	NR	4E-9		0.02803	[0.019-0.037] unit decrease novel	Illumina [6108953] (imputed)	N
1282	chr9	91486109	91486110	rs885100	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	9q22.1		rs885100-C	0.751	5E-11				Affymetrix [10369434] (imputed)	N
1282	chr9	91486109	91486110	rs885100	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	9q22.1		rs885100-T	0.248666	1E-34		0.031834587	[0.027-0.037] unit increase	Affymetrix [93095623] (imputed)	N
1283	chr9	91495134	91495135	rs61750929	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	9q22.1		rs61750929-T	NR	2E-14		0.0372	[0.028-0.047] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
1283	chr9	91495134	91495135	rs61750929	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	9q22.1		rs61750929-C	0.945	5E-24				Affymetrix [10369434] (imputed)	N
1283	chr9	91495134	91495135	rs61750929	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	9q22.1		rs61750929-C	0.945	1E-14				Affymetrix [10369434] (imputed)	N
1283	chr9	91495134	91495135	rs61750929	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	9q22.1		rs61750929-C	0.945	1E-19				Affymetrix [10369434] (imputed)	N
1283	chr9	91495134	91495135	rs61750929	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	9q22.1		rs61750929-C	0.945	2E-19				Affymetrix [10369434] (imputed)	N
1283	chr9	91495134	91495135	rs61750929	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	9q22.1	C9orf47	rs61750929-T	0.0606	9E-24		0.0284	[0.023-0.034] unit decrease	Affymetrix, Illumina [33811881] (imputed)	N
1283	chr9	91495134	91495135	rs61750929	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	9q22.1		rs61750929-T	0.055562	8E-30		0.054960594	[0.045-0.064] unit decrease	Affymetrix [93095623] (imputed)	N
1283	chr9	91495134	91495135	rs61750929	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	9q22.1		rs61750929-T	0.055457	2E-26		0.05221048	[0.043-0.062] unit decrease	Affymetrix [93095623] (imputed)	N
1283	chr9	91495134	91495135	rs61750929	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q22.1	NR	rs61750929-T	0.0480634	8E-68				Affymetrix, Illumina [24588908] (imputed)	N
1283	chr9	91495134	91495135	rs61750929	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	9q22.1		rs61750929-?	NR	6E-36				NR [~ 8900000] (imputed)	N
1283	chr9	91495134	91495135	rs61750929	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	9q22.1	intergenic	rs61750929-T	0.0559	5E-14		0.05865074	[0.043-0.074] unit increase	Affymetrix [~ 2500000] (imputed)	N
1283	chr9	91495134	91495135	rs61750929	27668658	Iotchkova V	2016-11-01	Nat Genet	Discovery and refinement of genetic loci associated with cardiometabolic risk using dense imputation maps.	Cardiometabolic and hematological traits	up to 35,981 European ancestry individuals	up to 102,505 European ancestry individuals	9q22.1	S1PR3	rs61750929-T		2E-21	(PLT)	0.081	[0.065-0.097] unit decrease	Affymetrix, Illumina [17000000] (imputed)	N
1283	chr9	91497781	91497782	rs62553882	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	9q22.1		rs62553882-T	NR	3E-22		0.0492	[0.039-0.059] unit increase	Affymetrix, Illumina [20535842] (imputed)	N
1283	chr9	91497781	91497782	rs62553882	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	9q22.1		rs62553882-C	0.945	4E-11		0.16	[0.11-0.21] % increase	Affymetrix [NR] (imputed)	N
1283	chr9	91497781	91497782	rs62553882	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q22.1	NR	rs62553882-C	0.944876	5E-30				Affymetrix, Illumina [22063850] (imputed)	N
1283	chr9	91497781	91497782	rs62553882	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	9q22.1	NR	rs62553882-T	0.056376	2E-71		0.071208	[0.063-0.079] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1283	chr9	91497781	91497782	rs62553882	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q22.1	NR	rs62553882-T	0.0551388	6E-25				Affymetrix, Illumina [24246363] (imputed)	N
1283	chr9	91497781	91497782	rs62553882	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	9q22.1	NR	rs62553882-T	0.056207	4E-27		0.042785	[0.035-0.051] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1283	chr9	91497781	91497782	rs62553882	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q22.1	NR	rs62553882-T	0.0550987	6E-63				Affymetrix, Illumina [23472807] (imputed)	N
1283	chr9	91500241	91500245	rs147817069	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	9q22.1	intergenic	rs147817069-A	0.4792	3E-35		0.04468526	[0.038-0.052] unit increase	Affymetrix [~ 2500000] (imputed)	N
1283	chr9	91500241	91500245	rs147817069	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	9q22.1	intergenic	rs147817069-A	0.4791	1E-31		0.04228868	[0.035-0.049] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1283	chr9	91503235	91503236	rs7040409	28898252	Wheeler E	2017-09-12	PLoS Med	Impact of common genetic determinants of Hemoglobin A1c on type 2 diabetes risk and diagnosis in ancestrally diverse populations: A transethnic genome-wide meta-analysis.	Glycated hemoglobin levels	88,355 European ancestry individuals	NA	9q22.1	C9orf47	rs7040409-C	0.8953	3E-14		0.0284	[0.021-0.036] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1283	chr9	91503986	91503987	rs192642798	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	9q22.1	SPIN1, S1PR3, SHC3, CKS2	rs192642798-?	NR	4E-9	(African)			Affymetrix, Illumina [18800000] (imputed)	N
1283	chr9	91510745	91510746	rs62553886	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	9q22.1	intergenic	rs62553886-T	0.0576	2E-11		0.0514549	[0.036-0.067] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1283	chr9	91529018	91529019	rs2316805	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	9q22.1		rs2316805-T	0.362	6E-21				Affymetrix [10369434] (imputed)	N
1283	chr9	91533615	91533616	rs2221310	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	9q22.1		rs2221310-C	0.637831	1E-50		0.035150804	[0.031-0.04] unit decrease	Affymetrix [93095623] (imputed)	N
1283	chr9	91534338	91534339	rs2134417	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	9q22.1	NR	rs2134417-A	0.569157	2E-14		0.017595185	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1283	chr9	91534338	91534339	rs2134417	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	9q22.1		rs2134417-G	0.430862	6E-27		0.028542642	[0.023-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
1283	chr9	91534338	91534339	rs2134417	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	9q22.1	NR	rs2134417-A	0.569591	2E-27		0.02034	[0.017-0.024] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1283	chr9	91534338	91534339	rs2134417	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	9q22.1		rs2134417-?	NR	4E-19				NR [~ 8900000] (imputed)	N
1283	chr9	91534863	91534864	rs1910267	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	9q22.1		rs1910267-T	0.362	2E-44				Affymetrix [10369434] (imputed)	N
1283	chr9	91535712	91535713	rs1157008	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	9q22.1		rs1157008-C	NR	2E-12		0.014	[0.01-0.018] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1283	chr9	91535712	91535713	rs1157008	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q22.1	NR	rs1157008-C	0.572279	3E-25				Affymetrix, Illumina [24649327] (imputed)	N
1283	chr9	91535712	91535713	rs1157008	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	9q22.1	intergenic	rs1157008-C	0.5716	7E-9		0.021158	[0.014-0.028] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1283	chr9	91535712	91535713	rs1157008	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	9q22.1	intergenic	rs1157008-C	0.5716	6E-41		0.04884877	[0.042-0.056] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1283	chr9	91536073	91536074	rs28450540	34582791	Mikhaylova AV	2021-09-27	Am J Hum Genet	Whole-genome sequencing in diverse subjects identifies genetic correlates of leukocyte traits: The NHLBI TOPMed program.	Monocyte count	14,246 African American individuals, 686 East Asian ancestry individuals, 33,285 European American ancestry individuals, 13,585 Hispanic/Latin American individuals	199,126 African ancestry, European ancestry, Hispanic or Latin American individuals	9q22.1		rs28450540-A	NR	3E-25		0.2161	[0.18-0.26] cell/L decrease	NR [93891280]	N
1283	chr9	91536650	91536651	rs9410411	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	9q22.1	NR	rs9410411-T	NR	2E-14		0.0413	[0.031-0.052] unit increase	Affymetrix [9000000] (imputed)	N
1283	chr9	91536650	91536651	rs9410411	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	9q22.1	NR	rs9410411-T	NR	2E-59		0.0895	[0.079-0.1] unit decrease	Affymetrix [9000000] (imputed)	N
1283	chr9	91536650	91536651	rs9410411	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	9q22.1	NR	rs9410411-T	NR	6E-12		0.0401	[0.029-0.051] unit increase	Affymetrix [9000000] (imputed)	N
1283	chr9	91538465	91538466	rs567880204	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	13,471 African American or Afro-Caribbean and African ancestry individuals	NA	9q22.1	NR	rs567880204-T	0.877058	9E-28		0.205004	[0.17-0.24] SD units increase	Affymetrix, Illumina [36452625] (imputed)	N
1283	chr9	91540058	91540059	rs1875620	22331829	Chasman DI	2012-02-13	Circ Cardiovasc Genet	Genetic determinants of statin-induced low-density lipoprotein cholesterol reduction: the Justification for the Use of Statins in Prevention: an Intervention Trial Evaluating Rosuvastatin (JUPITER) trial.	Response to statins (LDL cholesterol change)	6,989 European ancestry individuals	NA		S1PR3, SHC3, C9orf47	rs1875620-?	NR	7E-7	(absolute LDL-C reduction)	2.8	[1.62-3.98] mg/dL increase	Illumina [814418]	N
1283	chr9	91541377	91541378	rs12341441	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (monocyte)	16,201 African American or Afro-Caribbean individuals	NA	9q22.1		rs12341441-A	0.8756	3E-9		0.1426	[0.095-0.19] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1283	chr9	91545620	91545621	rs72747074	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	88,929 East Asian ancestry individuals	NA	9q22.1	NR	rs72747074-G	0.735111	5E-10		0.033516	[0.023-0.044] SD units decrease	Affymetrix, Illumina [16289044] (imputed)	N
1283	chr9	91566753	91566754	rs10867145	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	95,119 East Asian ancestry individuals	NA	9q22.1		rs10867145-T	0.272097	7E-11		0.0321227	[0.022-0.042] unit increase	Illumina [13471440] (imputed)	N
1283	chr9	91588517	91588518	rs117905930	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Logical memory (delayed recall) in Alzheimer's disease dementia	190 European ancestry Alzheimer's disease dementia cases	NA	9q22.1	PCNPP2, C9orf47, S1PR3, SHC3	rs117905930-T	0.02	7E-8		1.59	[1.04-2.14] unit decrease	Illumina [8411492] (imputed)	N
1283	chr9	91593289	91593290	rs62551476	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	9q22.1	RP11-791O21.5	rs62551476-C	0.1264	5E-15		0.0420644	[0.032-0.053] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1283	chr9	91593289	91593290	rs62551476	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	9q22.1	RP11-791O21.5	rs62551476-C	0.1264	1E-9		0.0326001	[0.022-0.043] unit increase	Affymetrix [~ 2500000] (imputed)	N
1283	chr9	91599102	91599103	rs4075163	27021288	Brevik EJ	2016-03-29	Am J Med Genet B Neuropsychiatr Genet	Genome-wide analyses of aggressiveness in attention-deficit hyperactivity disorder.	Oppositional defiant disorder dimensions in attention-deficit hyperactivity disorder	750 European ancestry child cases	NA	9q22.1	C9orf47	rs4075163-A	NR	1E-6	(Defiant/Vindictive dimension)	1.065	[0.64-1.49] unit increase	Illumina [1871025] (imputed)	N
1283	chr9	91602795	91602796	rs11791652	27021288	Brevik EJ	2016-03-29	Am J Med Genet B Neuropsychiatr Genet	Genome-wide analyses of aggressiveness in attention-deficit hyperactivity disorder.	Oppositional defiant disorder dimensions in attention-deficit hyperactivity disorder	750 European ancestry child cases	NA	9q22.1	C9orf47	rs11791652-T	NR	3E-6	(Defiant/Vindictive dimension)	1.017	[0.59-1.44] unit increase	Illumina [1871025] (imputed)	N
1283	chr9	91604004	91604005	rs7043095	27021288	Brevik EJ	2016-03-29	Am J Med Genet B Neuropsychiatr Genet	Genome-wide analyses of aggressiveness in attention-deficit hyperactivity disorder.	Oppositional defiant disorder dimensions in attention-deficit hyperactivity disorder	750 European ancestry child cases	NA	9q22.1	C9orf47	rs7043095-T	NR	3E-6	(Defiant/Vindictive dimension)	1.018	[0.6-1.44] unit increase	Illumina [1871025] (imputed)	N
1283	chr9	91616842	91616843	rs34075341	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	9q22.1	S1PR3	rs34075341-A	0.037	9E-10		0.05759686	[0.039-0.076] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1284	chr9	91621260	91621261	rs118017965	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	9q22.1	S1PR3, RP11-82L18.4	rs118017965-G	0.034532	7E-13		0.043546867	[0.032-0.055] unit decrease	Affymetrix [93095623] (imputed)	N
1284	chr9	91638211	91638212	rs7029876	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	9q22.1	SHC3	rs7029876-C	0.0420969	8E-19		0.049013108	[0.038-0.06] unit increase	Affymetrix [93095623] (imputed)	N
1284	chr9	91677506	91677507	rs17054710	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Superior parietal cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	9q22.1	SHC3	rs17054710-?		8E-6				Illumina [4322238] (imputed)	N
1284	chr9	91720365	91720366	rs117606530	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		SHC3	rs117606530-?	NR	1E-9		1.27688	[NR] unit increase	Affymetrix [NR] (imputed)	N
1284	chr9	91733080	91733081	rs9410458	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	9q22.1	NR	rs9410458-A	NR	2E-9		0.0499	[0.034-0.066] unit decrease	Affymetrix [9000000] (imputed)	N
1285	chr9	91813460	91813461	rs2209875	26545240	Giri A	2015-11-06	PLoS One	Genetic Determinants of Pelvic Organ Prolapse among African American and Hispanic Women in the Women's Health Initiative.	Pelvic organ prolapse (moderate/severe)	154 African American cases, 948 African American controls, 163 Hispanic cases, 305 Hispanic controls	NA	9q22.1	SHC3	rs2209875-G	0.69	9E-7		1.6666665		Affymetrix [at least 730985] (imputed)	N
1285	chr9	91813984	91813985	rs2316182	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	9q22.1		rs2316182-G	0.13	7E-9		0.01	[0.0061-0.0139] unit increase	NR [NR] (imputed)	N
1286	chr9	91937222	91937223	rs575268489	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Trunk fat mass	3,399 whole genome sequenced individuals, 12,838 European ancestry individuals	10,667 European ancestry individuals	9q22.2	SECISBP2	rs575268489-A	0.9985	3E-6		0.9794	[0.57-1.39] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1286	chr9	91994432	91994433	rs45464494	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	9q22.2	SEMA4D	rs45464494-C	0.92859375	2E-187	(SEMA4D, 5737_61_3)	1.2782488	[1.2-1.36] unit increase	Illumina [> 1000000] (imputed)	N
1286	chr9	91997363	91997364	rs140647145	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q22.2	SEMA4D	rs140647145-T	0.079	2E-292	(Semaphorin-4D, SEMA4D.5737.61.3)	1.42	[1.34-1.5] unit decrease	Affymetrix [10572788] (imputed)	N
1286	chr9	92003678	92003679	rs11526468	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	9q22.2	SEMA4D	rs11526468-T	0.298	7E-10		0.02416072	[0.016-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1286	chr9	92006535	92006536	rs13287803	32339537	Roberts V	2020-04-24	J Invest Dermatol	Genome wide association study identifies genetic associations with perceived age.	Youthful appearance (self-reported)	423,992 European ancestry individuals	NA	9q22.2	SEMA4D	rs13287803-C	0.770929	6E-9		0.9702656	NR	Affymetrix [~ 9600000] (imputed)	N
1286	chr9	92007224	92007225	rs6559349	34241534	Lu Y	2021-07-09	Circ Genom Precis Med	Multiethnic Genome-wide Association Study of Subclinical Atherosclerosis in Individuals with Type 2 Diabetes.	Coronary artery calcification in type 2 diabetes (excluding prevalent cardiovascular disease)	1,248 African American individuals	NA	9q22.2		rs6559349-G	0.67	9E-7		0.53	[0.31-0.75] unit increase	Affymetrix, Illumina [19600000] (imputed)	N
1287	chr9	92013727	92013728	rs4877080	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	9q22.2	SEMA4D	rs4877080-A	0.282566	2E-14		0.018909113	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1287	chr9	92013727	92013728	rs4877080	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	9q22.2	SEMA4D	rs4877080-A	0.282559	1E-12		0.017577283	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1287	chr9	92017732	92017733	rs41287361	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	9q22.2	SEMA4D	rs41287361-A	0.28161	5E-13		0.017921986	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1287	chr9	92025756	92025757	rs56339712	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	9q22.2	SEMA4D	rs56339712-T	0.2839	2E-9		0.02382063	[0.016-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1287	chr9	92025756	92025757	rs56339712	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	9q22.2	SEMA4D	rs56339712-T	0.2839	4E-9		0.02347117	[0.016-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1287	chr9	92027497	92027498	rs62547238	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	9q22.2	SEMA4D	rs62547238-A	0.283668	3E-13		0.018102646	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1287	chr9	92031360	92031362	rs58785784	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	9q22.2	SEMA4D	rs58785784-C	0.285321	1E-15		0.019914676	[0.015-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1287	chr9	92031360	92031362	rs58785784	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	9q22.2	SEMA4D	rs58785784-C	0.2855	7E-10		0.02445739	[0.017-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1287	chr9	92036426	92036427	rs4132699	28087736	Ludwig KU	2017-01-13	Hum Mol Genet	Imputation of orofacial clefting data identifies novel risk loci and sheds light on the genetic background of cleft lip ? cleft palate and cleft palate only.	Nonsyndromic cleft lip with or without cleft palate	399 European ancestry cases, 1,318 European ancestry controls, 666 European ancestry trios, 795 Asian trios	224 European ancestry cases, 921 European ancestry controls, 152 Mayan cases, 323 Mayan controls, 198 Middle Eastern cases, 391 Middle Eastern controls	9q22.2	NR	rs4132699-?		9E-8	(All)			NR [8012124] (imputed)	N
1287	chr9	92036426	92036427	rs4132699	22863734	Ludwig KU	2012-08-05	Nat Genet	Genome-wide meta-analyses of nonsyndromic cleft lip with or without cleft palate identify six new risk loci.	Orofacial clefts	Up to 666 European ancestry trios, 399 European ancestry cases, 1,318 European ancestry controls	up to 795 East Asian ancestry trios	9q22.2	NR	rs4132699-?	NR	5E-7	(Meta-All, NSCL/P)			NR [497084]	N
1287	chr9	92038143	92038144	rs7849438	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	9q22.2	SEMA4D	rs7849438-?		3E-8				Affymetrix, Illumina [NR] (imputed)	N
1287	chr9	92084244	92084245	rs79925169	30898391	Lawrenson K	2019-03-19	Gynecol Oncol	Genome-wide association studies identify susceptibility loci for epithelial ovarian cancer in east Asian women.	Epithelial ovarian cancer	3,238 East Asian ancestry cases, 4,083 East Asian ancestry controls	NA	9q22.2		rs79925169-?	NR	5E-6	(overall)	1.23		Illumina [11595112] (imputed)	N
1287	chr9	92093126	92093127	rs80068415	28296344	Chen G	2017-03-13	Obesity (Silver Spring)	Genome-wide analysis identifies an african-specific variant in SEMA4D associated with body mass index.	Body mass index	1,570 West African individuals	1,411 West African individuals, 9,020 African American individuals	9q22.2	SEMA4D	rs80068415-C	0.0058	1E-8		2.889	[1.89-3.88] kg/m2 increase	Affymetrix [13412051] (imputed)	N
1287	chr9	92094662	92094671	rs199883643	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q22.2	NR	rs199883643-T	0.177	4E-30	(Semaphorin-4D, SEMA4D.5737.61.3)	0.37	[0.31-0.43] unit increase	Affymetrix [10572788] (imputed)	N
1287	chr9	92117101	92117102	rs10908893	29234017	Carayol J	2017-12-12	Nat Commun	Protein quantitative trait locus study in obesity during weight-loss identifies a leptin regulator.	Protein levels in obesity	494 European ancestry individuals	NA	9q22.2	NR	rs10908893-?	NR	1E-7	(Coactosin-like protein)	0.32	[0.2-0.44] unit increase	Illumina [4020654] (imputed)	N
1287	chr9	92119578	92119579	rs13287131	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	9q22.2		rs13287131-T	0.741923	8E-9		0.0259672	[0.017-0.035] unit increase	NR [11722792] (imputed)	N
1287	chr9	92119578	92119579	rs13287131	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	9q22.2		rs13287131-T	0.741835	5E-8		0.024737	[0.016-0.034] unit increase	NR [11722792] (imputed)	N
1288	chr9	92172533	92172534	rs13297267	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	9q22.2	NR	rs13297267-?	NR	7E-10				Affymetrix [~ 8270000] (imputed)	N
1288	chr9	92177896	92177897	rs7036107	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	9q22.2		rs7036107-G	NR	2E-8		0.013	[0.0085-0.0175] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
1288	chr9	92177896	92177897	rs7036107	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	9q22.2		rs7036107-G	NR	1E-18		0.0216	[0.017-0.027] unit increase	Affymetrix, Illumina [20529698] (imputed)	N
1288	chr9	92177896	92177897	rs7036107	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	9q22.2	GADD45G	rs7036107-A	0.489022	3E-10		0.0122734	[0.0085-0.0161] unit increase	Affymetrix [NR] (imputed)	N
1288	chr9	92177896	92177897	rs7036107	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	9q22.2	GADD45G	rs7036107-A	0.488913	2E-8		0.011274	[0.0074-0.0152] unit increase	Affymetrix [NR] (imputed)	N
1288	chr9	92177896	92177897	rs7036107	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	9q22.2		rs7036107-?	NR	1E-12				NR [~ 8900000] (imputed)	N
1288	chr9	92178471	92178472	rs3949781	31589552	Lind L	2019-10-07	Metab Syndr Relat Disord	Genome-Wide Association Study of the Metabolic Syndrome in UK Biobank.	Metabolic syndrome	291,107 European ancestry individuals	NA	9q22.2	GADD45G	rs3949781-T	0.461633	8E-9		0.0380199	[0.025-0.051] unit decrease	Affymetrix [9463307] (imputed)	N
1288	chr9	92178471	92178472	rs3949781	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	9q22.2		rs3949781-?	NR	4E-11				NR [~ 8900000] (imputed)	N
1288	chr9	92183195	92183196	rs12351118	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	9q22.2	GADD45G	rs12351118-?	NR	4E-12		0.0197	[0.015-0.025] unit increase	Affymetrix [5701386] (imputed)	N
1288	chr9	92183412	92183413	rs10465231	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Automobile speeding propensity	404,291 European ancestry individuals	NA	9q22.2	GADD45G	rs10465231-T	0.5489	2E-8		0.012760806	[0.0083-0.0172] unit decrease	Affymetrix [11514463] (imputed)	N
1288	chr9	92189512	92189513	rs7030895	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Asthma	13,015 East Asian ancestry cases, 162,933 East Asian ancestry controls	NA	9q22.2		rs7030895-C	0.323168768	3E-10		0.09313052	[0.064-0.122] unit increase	Illumina [13429513] (imputed)	N
1288	chr9	92189512	92189513	rs7030895	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	9q22.2	SEMA4D, GADD45G	rs7030895-?		3E-10				NR [7428630] (imputed)	N
1288	chr9	92199270	92199271	rs10908900	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	9q22.2	NR	rs10908900-?	NR	2E-11				Affymetrix [~ 8270000] (imputed)	N
1288	chr9	92201796	92201797	rs10797117	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	9q22.2		rs10797117-C	NR	2E-11		0.017	[0.012-0.022] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
1288	chr9	92202494	92202495	rs10797119	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Asthma	8,216 Japanese ancestry cases, 201,592 Japanese ancestry controls	NA	9q22.2		rs10797119-C	0.321842978	1E-8		1.1073811	[1.068996778-1.147143698]	Illumina [8919992] (imputed)	N
1288	chr9	92202494	92202495	rs10797119	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	9q22.2	GADD45G	rs10797119-T	0.46338	5E-15		0.0156972	[0.012-0.02] unit decrease	Affymetrix [NR] (imputed)	N
1288	chr9	92202494	92202495	rs10797119	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	9q22.2		rs10797119-T	0.4633	3E-9		0.013	[0.0091-0.0169] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
1288	chr9	92205986	92205987	rs1888072	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Asthma	38,369 European ancestry cases, 411,131 European ancestry controls, 13,015 East Asian ancestry cases, 162,933 East Asian ancestry controls	NA	9q22.2		rs1888072-C	NR	4E-9		0.0413	[0.028-0.055] unit increase	Affymetrix, Illumina [25837673] (imputed)	N
1288	chr9	92205986	92205987	rs1888072	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	9q22.2		rs1888072-?	NR	1E-18				NR [~ 8900000] (imputed)	N
1288	chr9	92206783	92206783	rs769359210	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	9q22.2		rs769359210-CTTT	NR	6E-12		0.0165	[0.012-0.021] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1288	chr9	92206788	92206788	rs10681181	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Triglycerides	429,011 European ancestry individuals	NA	9q22.2		rs10681181-TTTG	0.48	7E-12		0.013	mmol/L increase	NR [NR] (imputed)	N
1288	chr9	92206788	92206788	rs10681181	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	9q22.2		rs10681181-TTTG	0.48	6E-15				NR [NR] (imputed)	N
1288	chr9	92206788	92206788	rs10681181	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	High density lipoprotein cholesterol levels	392,965 European ancestry individuals	NA	9q22.2		rs10681181-TTTG	0.48	4E-6		0.009	mmol/L decrease	NR [NR] (imputed)	N
1288	chr9	92206788	92206788	rs10681181	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	9q22.2		rs10681181-TTTG	0.48	2E-12		0.01	% increase	NR [NR] (imputed)	N
1288	chr9	92207307	92207308	rs7357754	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	9q22.2		rs7357754-A	0.500169	3E-9		0.0236506	[0.016-0.031] unit decrease	NR [11722792] (imputed)	N
1288	chr9	92207307	92207308	rs7357754	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	9q22.2		rs7357754-A	0.500169	2E-8		0.0221302	[0.014-0.03] unit increase	NR [11722792] (imputed)	N
1288	chr9	92207307	92207308	rs7357754	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	9q22.2		rs7357754-A	0.500169	2E-8		0.0218333	[0.014-0.029] unit increase	NR [11722792] (imputed)	N
1288	chr9	92207307	92207308	rs7357754	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	9q22.2	NA	rs7357754-A	0.4985	2E-12		0.012	[0.0087-0.0153] unit decrease	NR [~ 27400000] (imputed)	N
1288	chr9	92208226	92208227	rs1329733	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	9q22.2	NA	rs1329733-A	0.5298	3E-12		0.012	[0.0087-0.0153] unit decrease	NR [~ 27400000] (imputed)	N
1288	chr9	92208226	92208227	rs1329733	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	9q22.2	GADD45G	rs1329733-A	0.5243	4E-8		0.002	[0.0014-0.0026] unit increase	Affymetrix [15275733] (imputed)	N
1288	chr9	92209150	92209151	rs12335914	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	9q22.2	NR	rs12335914-C	0.4754	1E-10		0.016019592	[0.011-0.021] unit increase	Affymetrix [10549349] (imputed)	N
1288	chr9	92209586	92209587	rs7871395	28232668	Yu Y	2017-02-24	Nat Commun	Genome-wide analyses of non-syndromic cleft lip with palate identify 14 novel loci and genetic heterogeneity.	Nonsyndromic cleft lip with cleft palate	2,033 Han Chinese ancestry cases, 4,051 Han Chinese ancestry controls	1,346 Han Chinese ancestry cases, 4,542 Han Chinese ancestry controls	9q22.2	GADD45G	rs7871395-A	0.26	6E-9		1.21		Illumina [803202]	N
1288	chr9	92210068	92210069	rs12375983	28087736	Ludwig KU	2017-01-13	Hum Mol Genet	Imputation of orofacial clefting data identifies novel risk loci and sheds light on the genetic background of cleft lip ? cleft palate and cleft palate only.	Nonsyndromic cleft lip with or without cleft palate	399 European ancestry cases, 1,318 European ancestry controls, 666 European ancestry trios, 795 Asian trios	224 European ancestry cases, 921 European ancestry controls, 152 Mayan cases, 323 Mayan controls, 198 Middle Eastern cases, 391 Middle Eastern controls	9q22.2	NR	rs12375983-?		1E-6	(EA)			NR [8012124] (imputed)	N
1288	chr9	92210594	92210595	rs7024024	28090653	Liu Y	2017-01-16	Clin Pharmacol Ther	Genome-Wide Study Links PNPLA3 Variant With Elevated Hepatic Transaminase After Acute Lymphoblastic Leukemia Therapy.	Alanine aminotransferase (ALT) levels after remission induction therapy in actute lymphoblastic leukemia (ALL)	up to 488 European ancestry cases, up to 111 African American cases, up to 60 Hispanic cases, up to 56 other ancestry cases	NA	9q22.2	GADD45G	rs7024024-A		4E-6		1.2195122	[1.02-1.47]	Affymetrix, Illumina [NR] (imputed)	N
1288	chr9	92213966	92213967	rs1007966	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	9q22.2		rs1007966-G	0.48	7E-20		9.13	z score increase	Affymetrix [9061022] (imputed)	N
1288	chr9	92213966	92213967	rs1007966	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	9q22.2	NR	rs1007966-G	0.495	1E-17				NR [9056863] (imputed)	N
1288	chr9	92213966	92213967	rs1007966	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q22.2	NR	rs1007966-A	0.474759	1E-10				Affymetrix, Illumina [24653286] (imputed)	N
1288	chr9	92213966	92213967	rs1007966	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q22.2	NR	rs1007966-A	0.476294	3E-13				Affymetrix, Illumina [24558453] (imputed)	N
1288	chr9	92213966	92213967	rs1007966	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	9q22.2	Intergenic	rs1007966-A	0.5034	4E-13	(MTAG)	0.013	[0.0095-0.0165] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1288	chr9	92213966	92213967	rs1007966	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	9q22.2	Intergenic	rs1007966-G	0.4966	6E-9		0.0113	[0.0076-0.015] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1288	chr9	92213966	92213967	rs1007966	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	9q22.2	Intergenic	rs1007966-G	0.4963	5E-11		0.0149	[0.01-0.019] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1288	chr9	92214291	92214291	rs3215882	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	9q22.2		rs3215882-A	0.488941	4E-11		0.0260568	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
1288	chr9	92214291	92214291	rs3215882	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	9q22.2		rs3215882-A	0.488941	3E-8		0.022241	[0.014-0.03] unit increase	NR [11722792] (imputed)	N
1288	chr9	92214291	92214291	rs3215882	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	9q22.2		rs3215882-A	0.488941	1E-8		0.022674	[0.015-0.03] unit increase	NR [11722792] (imputed)	N
1288	chr9	92214291	92214291	rs3215882	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	9q22.2		rs3215882-A	0.488941	3E-8		0.0223788	[0.014-0.03] unit increase	NR [11722792] (imputed)	N
1288	chr9	92214291	92214291	rs3215882	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	9q22.2		rs3215882-A	0.488941	1E-8		0.0234655	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
1288	chr9	92214291	92214291	rs3215882	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	9q22.2		rs3215882-A	0.488941	3E-8		0.0220544	[0.014-0.03] unit increase	NR [11722792] (imputed)	N
1288	chr9	92215637	92215638	rs1571536	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	9q22.2	NR	rs1571536-C	0.516324	3E-11		0.012413	[0.0087-0.0161] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
1288	chr9	92216359	92216360	rs11265835	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	9q22.2	Intergenic	rs11265835-A	0.4828	8E-12	(MTAG)	0.0157	[0.011-0.02] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1288	chr9	92217644	92217645	rs3763669	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	9q22.2	Intergenic	rs3763669-C	0.5126	2E-17	(MTAG)	0.014	[0.011-0.017] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1288	chr9	92218999	92219000	rs3138490	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	9q22.2		rs3138490-T	0.47	4E-11		6.62	z score increase	Affymetrix [9061022] (imputed)	N
1288	chr9	92218999	92219000	rs3138490	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	9q22.2	SEMA4DGADD45G	rs3138490-A	0.515	7E-10		1.0237783		Affymetrix [11880941] (imputed)	N
1288	chr9	92219259	92219260	rs3138493	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	9q22.2		rs3138493-T	0.47	9E-28		10.92	z score increase	Affymetrix [9061022] (imputed)	N
1288	chr9	92219259	92219260	rs3138493	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	9q22.2	NR	rs3138493-T	0.4832	3E-12				NR [9056863] (imputed)	N
1288	chr9	92219259	92219260	rs3138493	28107422	de Vries PS	2017-01-20	PLoS One	Comparison of HapMap and 1000 Genomes Reference Panels in a Large-Scale Genome-Wide Association Study.	Fibrinogen levels	91,953 European ancestry individuals (imputed to 1000 Genomes)		9q22.2	GADD45G	rs3138493-?	NR	4E-9		0.006	unit increase	Affymetrix, Illumina [10883314] (imputed)	N
1288	chr9	92219259	92219260	rs3138493	26561523	de Vries PS	2015-11-10	Hum Mol Genet	A meta-analysis of 120 246 individuals identifies 18 new loci for fibrinogen concentration.	Fibrinogen levels	120,246 European ancestry individuals	NA	9q22.2	GADD45G	rs3138493-T	0.48	3E-9		0.0054	NR unit decrease	Affymetrix, Illumina [~ 10700000] (imputed)	N
1288	chr9	92222452	92222453	rs3138512	32373937	Dardani C	2020-05-06	Int J Epidemiol	Cleft lip/palate and educational attainment: cause, consequence or correlation? A Mendelian-randomization study.	Cleft lip with or without cleft palate	1,692 European ancestry cases, 4,259 European ancestry controls	NA	9q22.2	NR	rs3138512-?	NR	3E-8		0.3209	[0.21-0.43] unit increase	NR [7618724] (imputed)	N
1288	chr9	92224550	92224551	rs10752652	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	9q22.2	NR	rs10752652-C	NR	2E-9		0.0145	[0.0098-0.0192] unit decrease	Affymetrix [9000000] (imputed)	N
1288	chr9	92224550	92224551	rs10752652	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	9q22.2	NR	rs10752652-T	0.483117	2E-18		0.018369	[0.014-0.022] unit decrease	NR [NR]	N
1288	chr9	92225482	92225483	rs7873907	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	9q22.2	GADD45G	rs7873907-T	NR	2E-9		5.99	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1288	chr9	92225482	92225483	rs7873907	28107422	de Vries PS	2017-01-20	PLoS One	Comparison of HapMap and 1000 Genomes Reference Panels in a Large-Scale Genome-Wide Association Study.	Fibrinogen levels	91,953 European ancestry individuals (imputed to HapMap)		9q22.2	GADD45G, UNQ6494	rs7873907-?	NR	5E-9		0.006	unit increase	Affymetrix, Illumina [2749429] (imputed)	N
1288	chr9	92226171	92226172	rs7040995	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	9q22.2		rs7040995-G	NR	5E-10		0.0102	[0.0071-0.0133] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
1288	chr9	92226171	92226172	rs7040995	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	9q22.2		rs7040995-G	NR	3E-12		0.0118	[0.0085-0.0151] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
1288	chr9	92226171	92226172	rs7040995	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	9q22.2		rs7040995-G	NR	2E-10		0.0084	[0.0059-0.0109] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1288	chr9	92226171	92226172	rs7040995	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	9q22.2	GADD45G	rs7040995-G	0.46728	5E-10		0.0138959205	[0.0095-0.0183] unit decrease	Affymetrix [93095623] (imputed)	N
1288	chr9	92226171	92226172	rs7040995	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	9q22.2	GADD45G	rs7040995-G	0.467265	3E-11		0.014853389	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
1288	chr9	92226171	92226172	rs7040995	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	9q22.2		rs7040995-C	0.5324	5E-12		0.0097	[0.007-0.0124] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1288	chr9	92226171	92226172	rs7040995	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	9q22.2	Intergenic	rs7040995-C	0.5324	9E-16	(MTAG)	0.0105	[0.008-0.013] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1288	chr9	92226392	92226393	rs200018313	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Chronic sinus infection	5,291 European ancestry cases, 79,622 European ancestry controls	NA	9q22.2	NR	rs200018313-?	NR	3E-6		0.1577	[0.091-0.224] unit increase	Illumina [at least 560000] (imputed)	N
1288	chr9	92228558	92228559	rs10908903	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Follistatin levels	21,758 European ancestry individuals	9,173 individuals	9q22.2		rs10908903-T	0.54	1E-7		0.0467	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1288	chr9	92230040	92230041	rs7873096	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9q22.2		rs7873096-?	NR	1E-13				NR [~ 8900000] (imputed)	N
1288	chr9	92230746	92230747	rs870151	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	9q22.2	NR	rs870151-?		9E-13		0.0156288	[0.011-0.02] unit decrease	Affymetrix [19400418] (imputed)	N
1288	chr9	92233356	92233357	rs79512156	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	9q22.2		rs79512156-A	NR	2E-10		0.022	[0.015-0.029] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
1288	chr9	92234622	92234623	rs34698121	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	CAG-475 abundance in stool	5,959 Finnish ancestry individuals	NA	9q22.2		rs34698121-A	0.0132222	2E-9		0.38224	[0.26-0.51] unit increase	Illumina [7980478] (imputed)	N
1288	chr9	92245019	92245020	rs4877113	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Coffee consumption	335,909 European ancestry individuals	39,924 European ancestry individuals	9q22.2	UNQ6494	rs4877113-G	0.3931	5E-7		0.0076	[0.0047-0.0105] unit increase	Affymetrix [~ 7740000] (imputed)	N
1288	chr9	92249583	92249584	rs10908907	21529783	Heath AC	2011-04-27	Biol Psychiatry	A quantitative-trait genome-wide association study of alcoholism risk in the community: findings and implications.	Alcoholism (heaviness of drinking)	2,062 European ancestry alcohol dependence cases, 6,692 European ancestry controls	3,393 European ancestry individuals	9q22.2	intergenic	rs10908907-G	0.25	6E-6		0.099	[NR] unit increase	Illumina [~ 300000]	N
1288	chr9	92254896	92254897	rs28508285	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Uterine fibroids	21,024 European ancestry cases, 237,694 European ancestry controls, 14,475 East Asian ancestry cases, 65,733 East Asian ancestry controls	NA	9q22.2		rs28508285-G	NR	4E-11		0.0735	[0.052-0.095] unit increase	Affymetrix, Illumina [25795146] (imputed)	N
1288	chr9	92263290	92263292	rs201549755	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	9q22.2		rs201549755-C	NR	4E-8		0.0154	[0.0099-0.0209] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
1288	chr9	92263348	92263349	rs11265853	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	9q22.2		rs11265853-A	NR	1E-9		0.0138	[0.0093-0.0183] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
1288	chr9	92263348	92263349	rs11265853	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	9q22.2	NR	rs11265853-A	0.263552	4E-11		0.013837	[0.0097-0.0179] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
1288	chr9	92264394	92264395	rs78343805	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	9q22.2	NR	rs78343805-T	NR	3E-9		0.0377	[0.025-0.05] unit increase	Affymetrix [9000000] (imputed)	N
1288	chr9	92264394	92264395	rs78343805	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	9q22.2	NR	rs78343805-T	NR	2E-9		0.0382	[0.026-0.051] unit decrease	Affymetrix [9000000] (imputed)	N
1289	chr9	92280618	92280619	rs4876992	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	9q22.2	NR	rs4876992-T	0.517047	2E-9		0.0124346	[0.0084-0.0165] unit decrease	NR [NR]	N
1289	chr9	92281402	92281403	rs4876993	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	9q22.2	NR	rs4876993-T	0.488052	3E-9		0.00692412	[0.0045-0.0093] unit increase	Affymetrix [16585854] (imputed)	N
1289	chr9	92281402	92281403	rs4876993	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	9q22.2	NR	rs4876993-T	0.488052	8E-9		0.00773243	[0.0049-0.0105] unit increase	Affymetrix [16585866] (imputed)	N
1289	chr9	92285322	92285323	rs61311941	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	9q22.2	NR	rs61311941-G	NR	7E-11		0.0285	[0.02-0.037] unit decrease	Affymetrix [9000000] (imputed)	N
1289	chr9	92305845	92305846	rs79641712	30929638	Matana A	2019-03-30	Thyroid	Genetic variants in the ST6GAL1 gene are associated with thyroglobulin plasma level in healthy individuals.	Thyroglobulin plasma levels	1,094 Croatian ancestry individuals	NA	9q22.2	GADD45G	rs79641712-T	0.05	3E-6		0.48	[0.28-0.68] unit increase	Illumina [7597379] (imputed)	N
1289	chr9	92309686	92309687	rs10114707	34512620	Matzaraki V	2021-08-26	Front Immunol	Inflammatory Protein Profiles in Plasma of Candidaemia Patients and the Contribution of Host Genetics to Their Variability.	Candida albicans stimulated MMP-1 levels	378 European ancestry individuals	NA	9q22.2		rs10114707-?	NR	4E-8		5.51	z-score increase	Illumina [NR] (imputed)	N
1290	chr9	92466005	92466006	rs79166762	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Coronary artery disease in dyslipidemia	768 Korean ancestry cases, 19,999 Korean ancestry controls	NA	9q22.2		rs79166762-C	0.01918	8E-9		2.282	[1.724-3.01899999999999]	Affymetrix [7975321] (imputed)	N
1290	chr9	92466005	92466006	rs79166762	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Cardio-cerebrovascular disease in dyslipidemia	1,039 Korean ancestry cases, 19,727 Korean ancestry controls	NA	9q22.2		rs79166762-C	0.01918	9E-7		1.928	[1.483-2.505]	Affymetrix [7975321] (imputed)	N
1290	chr9	92484113	92484114	rs10908936	34387878	Kim KY	2021-08-13	Hepatology	Genome-wide association of individual vulnerability with alcoholic liver disease: A Korean Genome and Epidemiology Study.	Alcohol-associated liver disease in light drinkers	1,379 Korean ancestry cases, 13,132 Korean ancestry controls	NA	9q22.2		rs10908936-?	NR	9E-6		1.198	[1.106-1.298]	Affymetrix [7975321] (imputed)	N
1290	chr9	92505411	92505412	rs76443674	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9q22.2	NR	rs76443674-A	0.01394	1E-8	(OAT)	0.06368	NR unit increase	Illumina [1671387] (imputed)	N
1290	chr9	92505716	92505717	rs9696028	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	9q22.2		rs9696028-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1290	chr9	92507496	92507497	rs10908948	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	9q22.2		rs10908948-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1292	chr9	92682812	92682813	rs10117690	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	9q22.2		rs10117690-G	0.17878	7E-6		0.039538	[0.022-0.057] unit decrease	Affymetrix [15580782] (imputed)	N
1292	chr9	92706669	92706670	rs78530397	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	9q22.2	NR	rs78530397-C	0.114991	3E-8		0.0270673	[0.018-0.037] unit increase	NR [19129689] (imputed)	N
1292	chr9	92728858	92728859	rs6479586	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	9q22.2		rs6479586-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1292	chr9	92766619	92766620	rs10118552	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	9q22.2		rs10118552-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1293	chr9	92875666	92875667	rs10820912	28394258	Wild PS	2017-04-10	J Clin Invest	Large-scale genome-wide analysis identifies genetic variants associated with cardiac structure and function.	Left atrial antero-posterior diameter	30,201 European ancestry individuals	NA	9q22.2	NR	rs10820912-T	0.7509	5E-6		0.0199	[0.011-0.029] unit decrease	Affymetrix, Illumina [at least 283291] (imputed)	N
1293	chr9	92887230	92887231	rs2081670	18464913	Melzer D	2008-05-09	PLoS Genet	A genome-wide association study identifies protein quantitative trait loci (pQTLs).	Protein quantitative trait loci	1,200 European ancestry individuals	up to 4,590 European ancestry individuals	9q22.2	GADD45G, DIRAS2	rs2081670-?	0.15	3E-6	(MIP-1b)			Illumina [496032]	N
1293	chr9	92891295	92891296	rs7038808	34616010	Quintanilha JCF	2021-10-06	Br J Cancer	Bevacizumab-induced hypertension and proteinuria: a genome-wide study of more than 1000 patients.	Bevacizumab-induced composite toxicity (either hypertension or proteinuria)	1,039 European ancestry individuals	NA	9q22.2	intergenic	rs7038808-?	0.15	5E-6		0.85	unit increase	Illumina [828141]	N
1293	chr9	92892014	92892015	rs10992211	26980576	Kim K	2016-03-15	J Rheumatol	Response to Intravenous Cyclophosphamide Treatment for Lupus Nephritis Associated with Polymorphisms in the FCGR2B-FCRLA Locus.	Response to cyclophosphamide in systemic lupus erythematosus with lupus nephritis	93 Korean ancestry responder cases, 16 Korean ancestry non-responder cases	NA	9q22.2	LOC286370, LOC340515	rs10992211-?	NR	5E-6				Illumina [491617]	N
1293	chr9	92930044	92930045	rs56949836	26284813	Hayes MG	2015-08-18	Nat Commun	Genome-wide association of polycystic ovary syndrome implicates alterations in gonadotropin secretion in European ancestry populations.	Luteinizing hormone levels in polycystic ovary syndrome	645 European ancestry cases	607 European ancestry cases	9q22.2	IL6RL1, OR7E31P	rs56949836-T	0.06	4E-7		4.66	[2.84-6.48] mIU/mL increase	Illumina [at least 624044] (imputed)	N
1294	chr9	92937725	92937726	rs60589809	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental extreme longevity (95 years and older)	1,339 middle-aged British cases, 40,934 middle-aged British controls	NA	9q22.2	NR	rs60589809-?	NR	6E-7		0.01051	[0.0064-0.0146] unit decrease	Affymetrix [9658292] (imputed)	N
1294	chr9	93002539	93002540	rs190628913	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-2 receptor antagonist levels	3,677 Finnish ancestry individuals	NA	9q22.2	NR	rs190628913-C		9E-7		0.6911	[0.41-0.97] SD units increase	NR [10700000] (imputed)	N
1295	chr9	93065717	93065718	rs78628486	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	9q22.2	LINC0158	rs78628486-A	0.0123601213117838	1E-6		0.012186	[NR] unit increase	Affymetrix [> 30000000] (imputed)	N
1295	chr9	93093377	93093378	rs6479525	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Logical memory (immediate recall) in Alzheimer's disease dementia	190 European ancestry Alzheimer's disease dementia cases	NA	9q22.2	OR7E116P, DIRAS2	rs6479525-A	0.34	9E-7		0.39	[0.23-0.55] unit decrease	Illumina [8411492] (imputed)	N
1295	chr9	93109712	93109713	rs534035399	33075057	Li X	2020-10-19	PLoS Genet	Automated feature extraction from population wearable device data identified novel loci associated with sleep and circadian rhythms.	Sleep (1-day periodicity)	90,515 individuals	NA	9q22.2	LINC01508	rs534035399-G	NR	2E-9		0.454	[0.31-0.6] unit increase	NR [11024754] (imputed)	N
1295	chr9	93170622	93170623	rs150438131	34340725	Campos AI	2021-08-03	Twin Res Hum Genet	Genetic Susceptibility to Pneumonia: A GWAS Meta-Analysis Between the UK Biobank and FinnGen.	Pneumonia	24,760 European ancestry cases, 525,615 European ancestry controls	NA	9q22.2		rs150438131-A	NR	3E-6		0.043	[0.025-0.061] unit increase	NR [7831927]	N
1295	chr9	93181530	93181531	rs883924	22841784	Patin E	2012-07-26	Gastroenterology	Genome-wide association study identifies variants associated with progression of liver fibrosis from HCV infection.	Hepatitis C induced liver fibrosis	1,161 European ancestry HCV-infected individuals	1,181 European ancestry HCV-infected individuals	9q22.2	LOC340515	rs883924-A	0.26	2E-6	(Duration F0-1/F3-4,>20yo)			Illumina [780650] (imputed)	N
1296	chr9	93226519	93226520	rs554696049	33075057	Li X	2020-10-19	PLoS Genet	Automated feature extraction from population wearable device data identified novel loci associated with sleep and circadian rhythms.	Sleep (1-day periodicity)	90,515 individuals	NA	9q22.2	LINC01501	rs554696049-C	NR	5E-8		0.498	[0.32-0.68] unit increase	NR [11024754] (imputed)	N
1297	chr9	93331997	93331998	rs73503347	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Cerebellum cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	9q22.2	LOC340515	rs73503347-?		4E-6				Illumina [4322238] (imputed)	N
1297	chr9	93356764	93356765	rs690364	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	9q22.2	NR	rs690364-A	0.243	8E-7	(IFNalpha_DRPQ_of_CD20p)			Illumina [5084123] (imputed)	N
1297	chr9	93357337	93357338	rs7856157	30319691	Liu C	2018-09-24	Front Genet	Genome-Wide Association and Mechanistic Studies Indicate That Immune Response Contributes to Alzheimer's Disease Development.	Cerebrospinal fluid AB1-42 levels	235 early mild cognitive impairment cases, 249 late mild cognitive impairment cases, 47 Alzheimer's disease cases, 281 controls.	NA	9q22.2	Intergenic	rs7856157-?		8E-6		143.9189	[NR] unit decrease	Illumina [575353]	N
1297	chr9	93409356	93409357	rs1831521	17903297	Seshadri S	2007-09-19	BMC Med Genet	Genetic correlates of brain aging on MRI and cognitive test measures: a genome-wide association and linkage analysis in the Framingham Study.	Cognitive test performance	694 European ancestry individuals	NA	9q22.2	DIRAS2	rs1831521-?	NR	8E-6	(Nam)			Affymetrix [70897]	N
1297	chr9	93419073	93419073	rs138976580	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	9q22.2	Intergenic	rs138976580-?	NR	9E-6	(men)	0.0940579	[0.052-0.136] unit decrease	Illumina [13520550] (imputed)	N
1297	chr9	93442204	93442205	rs10993625	25763902	Draaken M	2015-03-12	PLoS Genet	Genome-wide association study and meta-analysis identify ISL1 as genome-wide significant susceptibility gene for bladder exstrophy.	Classic bladder exstrophy	208 European ancestry cases, 1,703 European ancestry controls	NA	9q22.2	NR	rs10993625-C	0.149	3E-6		1.97	[1.48-2.63]	Illumina [7261187] (imputed)	N
1298	chr9	93488533	93488534	rs1172922	30636644	Nazarian A	2019-01-12	Alzheimers Res Ther	Genome-wide analysis of genetic predisposition to Alzheimer's disease and related sex disparities.	Alzheimer's disease	952 European ancestry male cases, 1,789 European ancestry female cases, 6,337 European ancestry male controls, 8,402 European ancestry female controls	NA	9q22.2	SYK	rs1172922-A	0.117523	5E-6	(females)	1.407788	[1.22-1.6]	Affymetrix, Illumina [2928658] (imputed)	N
1298	chr9	93501129	93501130	rs1148845	34838041	Naderi E	2021-11-27	J Transl Med	A two-stage genome-wide association study of radiation-induced acute toxicity in head and neck cancer.	radiation-induced toxicity (standardized total average toxicity_patient)	881 Dutch ancestry individuals	241 Dutch ancestry individuals	9q22.2		rs1148845-C	NR	4E-6		0.17441906	[0.1-0.25] decrease	Illumina [6334277] (imputed)	N
1298	chr9	93514241	93514242	rs12380216	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	9q22.2	NR	rs12380216-?	NR	6E-56				Affymetrix [NR]	N
1298	chr9	93546912	93546913	rs290274	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	9q22.2		rs290274-G	0.538	2E-8				Affymetrix [10369434] (imputed)	N
1298	chr9	93552449	93552450	rs290268	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q22.2	NR	rs290268-A	0.545677	2E-11				Affymetrix, Illumina [17210439] (imputed)	N
1298	chr9	93552449	93552450	rs290268	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	9q22.2	NR	rs290268-A	0.53984	2E-12		0.013565	[0.0098-0.0173] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1298	chr9	93552449	93552450	rs290268	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	9q22.2	intergenic	rs290268-G	0.4605	2E-9		0.02198899	[0.015-0.029] unit increase	Affymetrix [~ 2500000] (imputed)	N
1298	chr9	93554952	93554953	rs290260	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	9q22.2	DIRAS2	rs290260-C	NR	6E-7		1.0613	NR	Affymetrix, Illumina [8278136] (imputed)	N
1298	chr9	93559476	93559477	rs290995	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	9q22.2	SYK	rs290995-A	0.467909	2E-25		0.023521835	[0.019-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
1298	chr9	93559476	93559477	rs290995	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	9q22.2	SYK	rs290995-A	0.467923	9E-18		0.019264221	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1298	chr9	93559476	93559477	rs290995	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	9q22.2	SYK	rs290995-A	0.467912	6E-9		0.013170258	[0.0087-0.0176] unit decrease	Affymetrix [93095623] (imputed)	N
1298	chr9	93563266	93563267	rs290987	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	9q22.2		rs290987-A	NR	8E-19		0.0188	[0.015-0.023] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
1298	chr9	93563535	93563536	rs290986	26920376	Wang Y	2016-02-26	Mult Scler	Genetic overlap between multiple sclerosis and several cardiovascular disease risk factors.	Multiple sclerosis and HDL levels (pleiotropy)	215,725 individuals	NA	9q22.2	SYK	rs290986-?	NR	1E-6			[1.0641-1.1436]	NR [2492237]	N
1298	chr9	93563535	93563536	rs290986	21833088	Sawcer S	2011-08-11	Nature	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	9q22.2	SYK	rs290986-A	NR	9E-7		1.1	[1.08-1.12]	Illumina [465434]	N
1298	chr9	93565998	93565999	rs1319677	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	9q22.2		rs1319677-G	NR	9E-20		0.0176	[0.014-0.021] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1298	chr9	93565998	93565999	rs1319677	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	9q22.2		rs1319677-G	NR	1E-12		0.0147	[0.011-0.019] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
1298	chr9	93567280	93567281	rs2780701	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	9q22.2	SYK	rs2780701-G	0.4605	2E-11		0.02431415	[0.017-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1298	chr9	93567502	93567503	rs1333634	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q22.2	NR	rs1333634-A	0.4987	5E-26				Affymetrix, Illumina [24588908] (imputed)	N
1298	chr9	93567502	93567503	rs1333634	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	9q22.2	NR	rs1333634-A	0.460831	2E-24		0.018717	[0.015-0.022] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1298	chr9	93567571	93567572	rs1333633	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q22.2	NR	rs1333633-A	0.582009	3E-14				Affymetrix, Illumina [23467995] (imputed)	N
1298	chr9	93567571	93567572	rs1333633	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	9q22.2	NR	rs1333633-A	0.556765	2E-14		0.01439	[0.011-0.018] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
1298	chr9	93567606	93567607	rs919386	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	9q22.2	SYK	rs919386-C	0.554095	9E-11		0.014584016	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
1298	chr9	93567731	93567732	rs1333632	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	9q22.2	SYK	rs1333632-G	0.468551	2E-11		0.014958286	[0.011-0.019] unit increase	Affymetrix [93095623] (imputed)	N
1298	chr9	93581182	93581183	rs11792561	31586183	Niazi Y	2019-10-04	Mutagenesis	Distinct pathways associated with chromosomal aberration frequency in a cohort exposed to genotoxic compounds compared to general population.	Chromosomal aberration frequency (total)	607 European and unknown ancestry genotoxic compound-exposed individuals, 866 European and unknown ancestry unexposed individuals	NA	9q22.2	SYK	rs11792561-?	NR	2E-7		0.15	[NR] unit decrease	Illumina [> 2600000] (imputed)	N
1299	chr9	93607471	93607472	rs2387339	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Frontal pole volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	9q22.2	SYK	rs2387339-?		6E-7				Illumina [4322238] (imputed)	N
1299	chr9	93622834	93622835	rs1760125	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	9q22.2	SYK	rs1760125-G	0.689245	1E-12		0.01731154	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1299	chr9	93633239	93633240	rs10993738	22456796	Imamura M	2012-03-28	Hum Mol Genet	A single-nucleotide polymorphism in ANK1 is associated with susceptibility to type 2 diabetes in Japanese populations.	Type 2 diabetes	4,470 Japanese ancestry cases, 3,071 Japanese ancestry controls	7,605 Japanese ancestry cases, 3,534 Japanese ancestry controls	9q22.2	SYK	rs10993738-?	0.152	5E-6		1.16	[1.09-1.23]	NR [2229890] (imputed)	N
1299	chr9	93636663	93636664	rs290227	23480133	Kim Y	2011-02-28	World J Biol Psychiatry	Association of intronic sequence variant in the gene encoding spleen tyrosine kinase with susceptibility to vascular dementia.	Vascular dementia	84 Korean ancestry cases, 200 Korean ancestry controls	113 Korean ancestry cases, 255 Korean ancestry controls	9q22.2	SYK	rs290227-G	0.40	7E-11		2.2	[1.73-2.78]	NR [300640]	N
1299	chr9	93653259	93653260	rs1675334	28416822	Low SK	2017-04-17	Nat Genet	Identification of six new genetic loci associated with atrial fibrillation in the Japanese population.	Atrial fibrillation	8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls	3,120 Japanese ancestry cases, 125,064 Japanese ancestry controls, 15,993 European ancestry cases, 113,719 European ancestry controls	9q22.2	SYK	rs1675334-G	0.291	6E-6	(Japanese)	1.087	[1.048-1.126]	Illumina [5018049] (imputed)	N
1299	chr9	93701051	93701052	rs291748	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Anti-saccade response	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	9q22.2	SYK	rs291748-G	0.142	9E-6				Illumina [4404269] (imputed)	N
1300	chr9	93801207	93801208	rs2184540	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	9q22.2		rs2184540-A	0.235706	2E-11		0.01748529	[0.012-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1300	chr9	93801207	93801208	rs2184540	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	9q22.2		rs2184540-A	0.235702	1E-10		0.016783953	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1300	chr9	93801207	93801208	rs2184540	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q22.2	NR	rs2184540-A	0.261628	4E-13				Affymetrix, Illumina [24653286] (imputed)	N
1300	chr9	93801207	93801208	rs2184540	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	9q22.2	NR	rs2184540-A	0.234038	1E-14		0.016877	[0.013-0.021] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
1300	chr9	93801207	93801208	rs2184540	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q22.2	NR	rs2184540-A	0.260112	3E-13				Affymetrix, Illumina [24558453] (imputed)	N
1300	chr9	93801207	93801208	rs2184540	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	9q22.2	NR	rs2184540-A	0.233996	6E-15		0.017173	[0.013-0.021] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
1300	chr9	93801207	93801208	rs2184540	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	9q22.2		rs2184540-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1301	chr9	93862036	93862037	rs7019519	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	9q22.2	SYK	rs7019519-?	NR	1E-6	(adenosine diphosphate)	0.45620906	[0.27-0.64] unit increase	Affymetrix [at least 2500000] (imputed)	N
1301	chr9	93865034	93865035	rs74744940	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,963 Sub-Saharan African ancestry females	NA	9q22.2		rs74744940-G	0.983195	7E-7		0.0506609	[0.031-0.071] unit decrease	Illumina [13900000] (imputed)	N
1301	chr9	93900229	93900230	rs7040727	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	9q22.2	RP11-305L7.6, RP11-305L7.3	rs7040727-T	0.9137796	1E-12		0.028539909	[0.021-0.036] unit increase	Affymetrix [93095623] (imputed)	N
1301	chr9	93902575	93902576	rs7048945	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	9q22.2	NR	rs7048945-G	0.0810024	7E-10		0.0349505	[0.024-0.046] unit increase	NR [19129689] (imputed)	N
1301	chr9	93915269	93915270	rs943501	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	9q22.2	RP11-305L7.6, RP11-305L7.3	rs943501-T	0.9277814	2E-11		0.028872201	[0.02-0.037] unit increase	Affymetrix [93095623] (imputed)	N
1301	chr9	93926649	93926650	rs7045740	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	9q22.2		rs7045740-?	NR	4E-11				NR [~ 8900000] (imputed)	N
1301	chr9	93928415	93928416	rs4743820	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	9q22.2	AUH	rs4743820-?		4E-6				Illumina [9725440] (imputed)	N
1301	chr9	93928415	93928416	rs4743820	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	9q22.2	NR	rs4743820-A	0.7	4E-9	(EA)	1.0842872		Affymetrix, Illumina [~ 9000000] (imputed)	N
1301	chr9	93928415	93928416	rs4743820	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	9q22.2	NR	rs4743820-A	0.7	4E-9	(EA)	1.0660416		Affymetrix, Illumina [~ 9000000] (imputed)	N
1301	chr9	93928415	93928416	rs4743820	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	9q22.2	NFIL3	rs4743820-T	0.702	4E-9		1.056	[1.023-1.089]	Affymetrix, Illumina [1230000] (imputed)	N
1301	chr9	93930021	93930022	rs112679102	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	9q22.2		rs112679102-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1301	chr9	93930670	93930671	rs10991797	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	9q22.2		rs10991797-?	NR	1E-7				NR [~ 8900000] (imputed)	N
1301	chr9	93943032	93943033	rs73650963	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	9q22.2		rs73650963-?	NR	3E-14				NR [~ 8900000] (imputed)	N
1301	chr9	93943139	93943140	rs59581968	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	9q22.2	NR	rs59581968-?	NR	1E-14				Affymetrix [~ 8270000] (imputed)	N
1301	chr9	93949074	93949075	rs10991814	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	9q22.2	RP11-305L7.6	rs10991814-C	0.1198	9E-10		0.03374259	[0.023-0.045] unit increase	Affymetrix [~ 2500000] (imputed)	N
1301	chr9	93956002	93956003	rs200760632	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	9q22.2	intergenic	rs200760632-G	0.1932	2E-11		0.03107506	[0.022-0.04] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1301	chr9	93957250	93957251	rs10991823	32227112	Lee MA	2020-03-30	Hum Mol Genet	Common variation at 16p11.2 is associated with glycosuria in pregnancy: Findings from a genome-wide association study in European women.	Glycosuria in pregnancy (maternal genotype effect)	1,249 European ancestry cases, 5,140 European ancestry controls	NA	9q22.2	NR	rs10991823-T	0.103641	4E-8		1.46864	[1.28677-1.67622]	Illumina [9323831] (imputed)	N
1301	chr9	93959593	93959594	rs74508579	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	9q22.2	RP11-305L7.7	rs74508579-T	NR	3E-10		0.0290146	[0.02-0.038] unit increase	Affymetrix [319769] (imputed)	N
1301	chr9	93959593	93959594	rs74508579	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	9q22.2	RP11-305L7.7	rs74508579-T	NR	2E-10		0.0292232	[0.02-0.038] unit increase	Affymetrix [319769] (imputed)	N
1301	chr9	93968639	93968640	rs9792678	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	9q22.31		rs9792678-C	0.821	3E-13				Affymetrix [10369434] (imputed)	N
1301	chr9	93972657	93972658	rs16907277	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	9q22.31	NR	rs16907277-A	0.8906	9E-15		0.0228	[0.017-0.028] unit decrease	NR [~ 27400000] (imputed)	N
1301	chr9	93974552	93974553	rs773507	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	9q22.31		rs773507-T	NR	6E-36		0.0271	[0.023-0.031] unit decrease	Affymetrix, Illumina [20535842] (imputed)	N
1301	chr9	93974552	93974553	rs773507	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	9q22.31		rs773507-T	NR	2E-8		0.0117	[0.0076-0.0158] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
1301	chr9	93975470	93975471	rs773506	21150874	McDonough CW	2010-12-08	Kidney Int	A genome-wide association study for diabetic nephropathy genes in African Americans.	Type 2 diabetes nephropathy	965 African American cases, 1,029 African American controls	709 African American cases, 690 African American controls	9q22.31	AUH	rs773506-G	0.77	6E-6		1.32	[1.18-1.49]	Affymetrix [832357]	N
1302	chr9	93980557	93980558	rs56049491	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	124,341 East Asian ancestry individuals	NA	9q22.31		rs56049491-A	0.218641	1E-10		0.0297849	[0.021-0.039] unit decrease	Illumina [13476323] (imputed)	N
1302	chr9	93980557	93980558	rs56049491	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Total bilirubin levels	110,207 Japanese ancestry individuals	NA	9q22.31	AUH	rs56049491-?	NR	2E-12		0.03704	[0.027-0.047] unit decrease novel	Illumina [6108953] (imputed)	N
1302	chr9	93992852	93992853	rs139454338	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	9q22.31	AUH	rs139454338-A	NR	2E-8		0.0290308	[0.019-0.039] unit decrease	Affymetrix [323858] (imputed)	N
1302	chr9	94010297	94010298	rs76530346	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	9q22.31		rs76530346-A	NR	3E-8		0.0204	[0.013-0.028] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
1302	chr9	94010297	94010298	rs76530346	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	9q22.31	AUH	rs76530346-G	0.905052	4E-9		0.0192931	[0.013-0.026] unit increase	Affymetrix [NR] (imputed)	N
1302	chr9	94018267	94018268	rs72740742	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9q22.31	NR	rs72740742-G	0.01045	6E-20	(PRPS1)	0.05648	NR unit increase	Illumina [1671387] (imputed)	N
1302	chr9	94018267	94018268	rs72740742	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9q22.31	NR	rs72740742-G	0.01045	1E-18	(PRPS2)	0.2145	NR unit increase	Illumina [1671387] (imputed)	N
1302	chr9	94055391	94055392	rs55642352	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	9q22.31		rs55642352-C	NR	1E-24		0.023	[0.019-0.027] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
1302	chr9	94096751	94096752	rs201272561	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	9q22.31	AUH	rs201272561-T	0.1579	5E-13		0.03677639	[0.027-0.047] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1302	chr9	94096751	94096752	rs201272561	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	9q22.31	AUH	rs201272561-T	0.1579	4E-11		0.03365859	[0.024-0.044] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1302	chr9	94096751	94096752	rs201272561	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	9q22.31	AUH	rs201272561-T	0.1578	1E-14		0.0392951	[0.029-0.049] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1303	chr9	94110287	94110288	rs6479336	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	9q22.31	NR	rs6479336-A	0.18496	3E-30		0.029195	[0.024-0.034] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
1303	chr9	94121329	94121330	rs7020893	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q22.31	NR	rs7020893-A	0.217328	2E-28				Affymetrix, Illumina [19872809] (imputed)	N
1303	chr9	94121329	94121330	rs7020893	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	9q22.31		rs7020893-?	NR	2E-38				NR [~ 8900000] (imputed)	N
1303	chr9	94124413	94124414	rs13289294	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	9q22.31	AUH	rs13289294-C	0.74904	4E-9		0.015243484	[0.01-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1303	chr9	94127316	94127317	rs76179738	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	9q22.31	AUH	rs76179738-T	0.184661	3E-23		0.028279927	[0.023-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
1303	chr9	94127316	94127317	rs76179738	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	9q22.31	AUH	rs76179738-T	0.184657	3E-25		0.0296049	[0.024-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
1303	chr9	94157845	94157846	rs10991921	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	9q22.31	NR	rs10991921-G	NR	4E-16		0.028	[0.021-0.035] unit increase	Affymetrix [9000000] (imputed)	N
1303	chr9	94157845	94157846	rs10991921	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	9q22.31	NR	rs10991921-G	NR	4E-13		0.0269	[0.02-0.034] unit increase	Affymetrix [9000000] (imputed)	N
1303	chr9	94186526	94186527	rs12001634	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	9q22.31	NR	rs12001634-A	0.3362	8E-10		0.016126212	[0.011-0.021] unit decrease	Affymetrix [10549349] (imputed)	N
1303	chr9	94186972	94186973	rs10820852	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	9q22.31		rs10820852-A	NR	8E-13		0.0132	[0.0097-0.0167] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1303	chr9	94186972	94186973	rs10820852	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	9q22.31		rs10820852-A	NR	5E-11		0.0139	[0.0098-0.018] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1303	chr9	94186972	94186973	rs10820852	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	9q22.31		rs10820852-?	NR	9E-13				NR [~ 8900000] (imputed)	N
1303	chr9	94187246	94187247	rs3811125	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	9q22.31	NR	rs3811125-?	NR	8E-12				Affymetrix [~ 8270000] (imputed)	N
1303	chr9	94187246	94187247	rs3811125	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	9q22.31	NA	rs3811125-T	0.2806	9E-13		0.0152	[0.011-0.019] unit decrease	NR [~ 27400000] (imputed)	N
1304	chr9	94252218	94252219	rs62562580	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	9q22.31	NFIL3, ROR2	rs62562580-G	0.21675299999999997	2E-6		0.017586	[0.01-0.025] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
1304	chr9	94252218	94252219	rs62562580	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	9q22.31	NFIL3, ROR2	rs62562580-G	0.211768	2E-8		0.017226	[0.011-0.023] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1304	chr9	94262643	94262644	rs4744056	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	9q22.31	NR	rs4744056-?	NR	5E-6		4.558	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1304	chr9	94267243	94267244	rs56329252	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9q22.31		rs56329252-?	NR	7E-10				NR [~ 8900000] (imputed)	N
1304	chr9	94281709	94281710	rs6479352	25781172	Avramopoulos D	2015-03-17	PLoS One	Infection and inflammation in schizophrenia and bipolar disorder: a genome wide study for interactions with genetic variation.	Bipolar disorder (inflammation and infection response interaction)	397 Ashkenazi Jewish bipolar disorder cases, 241  Ashkenazi Jewish controls	NA	9q22.31	ROR2, NFIL3, AUH, MIR3910	rs6479352-?		8E-6	(anti-CMV)			Affymetrix [516638]	N
1304	chr9	94292593	94292594	rs6479353	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Varicose veins	22,037 European ancestry cases, 437,665 European ancestry controls, 474 East Asian ancestry cases, 178,252 East Asian ancestry controls	NA	9q22.31		rs6479353-A	NR	6E-11		0.0728	[0.051-0.095] unit increase	Affymetrix, Illumina [25842955] (imputed)	N
1304	chr9	94339509	94339510	rs9409609	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris color (L* coordinate)	329 South Asian ancestry individuals		9q22.31	ROR2	rs9409609-A	0.150561	7E-6		0.517451	[0.3-0.74] unit decrease	Illumina [640625] (imputed)	N
1305	chr9	94395859	94395860	rs1873747	25483131	Ghassibe-Sabbagh M	2014-12-08	Sci Rep	T2DM GWAS in the Lebanese population confirms the role of TCF7L2 and CDKAL1 in disease susceptibility.	Type 2 diabetes	1,384 Lebanese ancestry cases, 1,902 Lebanese ancestry controls	NA	9q22.31	ROR2	rs1873747-T	0.13	4E-6		1.41	[1.22-1.63]	Illumina [5891794] (imputed)	N
1305	chr9	94451964	94451965	rs1907805	26911590	Mullin BH	2016-02-25	BMC Genomics	Genome-wide association study using family-based cohorts identifies the WLS and CCDC170/ESR1 loci as associated with bone mineral density.	Bone mineral density (hip)	1,042 Northern European ancestry individuals	5,654 Northern European ancestry individuals	9q22.31	ROR2	rs1907805-T	0.04	3E-7		0.31	[0.19-0.43] g/cm2 increase	Illumina [NR] (imputed)	N
1305	chr9	94480902	94480903	rs56009112	33692830	Indencleef K	2021-02-22	Front Genet	The Intersection of the Genetic Architectures of Orofacial Clefts and Normal Facial Variation.	Facial morphology traits (59 NSCL/P endophenotypic segments)	8,246 European ancestry individuals	NA	9q22.31	NR	rs56009112-?	NR	7E-9	(Quadrant O (Nose + Philtrum), Segment 2)	0.014826197	NR unit decrease	NR [7417619] (imputed)	N
1305	chr9	94485927	94485928	rs2230578	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 2)	3,566 European ancestry individuals	4,680 European ancestry individuals	9q22.31		rs2230578-C	0.318527919	6E-9				Illumina [7417619] (imputed)	N
1305	chr9	94485927	94485928	rs2230578	31763980	Xiong Z	2019-11-25	Elife	Novel genetic loci affecting facial shape variation in humans.	Facial morphology	10,115 European ancestry individuals	NA	9q22.31	ROR2	rs2230578-C	0.32	9E-9	(left endocanthion-subnasale distance)	0.087	NR unit increase	Illumina [7029494] (imputed)	N
1305	chr9	94486320	94486321	rs10761129	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9q22.31		rs10761129-?	NR	1E-28				NR [~ 8900000] (imputed)	N
1305	chr9	94486320	94486321	rs10761129	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	9q22.31	NR	rs10761129-?	NR	4E-6				Illumina [at least 7383741] (imputed)	N
1305	chr9	94486320	94486321	rs10761129	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Nose size	67,023 European ancestry individuals	NA	9q22.31	ROR2	rs10761129-?	NR	7E-9		0.026	[0.034-0.017] unit decrease	Illumina [12039491] (imputed)	N
1306	chr9	94546431	94546432	rs74321654	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	9q22.31	NR	rs74321654-A	NR	7E-6	(male)	0.4058	[0.23-0.58] unit decrease	Illumina [11133794] (imputed)	N
1306	chr9	94568423	94568424	rs10820904	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	9q22.31	NR	rs10820904-A	0.17	2E-7	(Japanese, Female)	0.031	[0.019-0.043] unit decrease	Illumina [6108953] (imputed)	N
1307	chr9	94691626	94691627	rs76684062	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	9q22.31		rs76684062-A	0.2398	8E-6		1.249		NR [11110260] (imputed)	N
1307	chr9	94691643	94691644	rs16908003	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	9q22.31		rs16908003-A	0.2398	8E-6		1.249		NR [11110260] (imputed)	N
1307	chr9	94695328	94695329	rs77094301	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	9q22.31		rs77094301-A	0.2412	8E-6		1.249		NR [11110260] (imputed)	N
1307	chr9	94695368	94695369	rs117106774	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	9q22.31		rs117106774-A	0.2402	8E-6		1.25		NR [11110260] (imputed)	N
1307	chr9	94736560	94736561	rs1919102	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	9q22.31		rs1919102-T	0.3502	8E-6		1.228		NR [11110260] (imputed)	N
1307	chr9	94736588	94736589	rs1919103	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	9q22.31		rs1919103-T	0.3502	8E-6		1.228		NR [11110260] (imputed)	N
1308	chr9	94767761	94767762	rs117063038	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	9q22.31		rs117063038-G	0.3013	7E-6		1.236		NR [11110260] (imputed)	N
1308	chr9	94771533	94771534	rs10992195	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	9q22.31		rs10992195-G	0.3308	2E-6		1.247		NR [11110260] (imputed)	N
1308	chr9	94773647	94773648	rs79699262	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	9q22.31		rs79699262-C	0.3021	8E-6		1.235		NR [11110260] (imputed)	N
1308	chr9	94774870	94774871	rs2096388	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	9q22.31		rs2096388-T	0.302	7E-6		1.235		NR [11110260] (imputed)	N
1308	chr9	94810263	94810264	rs10820935	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	9q22.31		rs10820935-A	0.2969	9E-6		1.234		NR [11110260] (imputed)	N
1308	chr9	94815767	94815768	rs10992215	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	9q22.31		rs10992215-T	0.2969	9E-6		1.234		NR [11110260] (imputed)	N
1308	chr9	94816156	94816157	rs10992216	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	9q22.31		rs10992216-G	0.2969	9E-6		1.234		NR [11110260] (imputed)	N
1308	chr9	94817130	94817131	rs115264513	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	9q22.31		rs115264513-A	0.2974	9E-6		1.234		NR [11110260] (imputed)	N
1308	chr9	94822539	94822540	rs7872515	22688191	Bergen SE	2012-06-12	Mol Psychiatry	Genome-wide association study in a Swedish population yields support for greater CNV and MHC involvement in schizophrenia compared with bipolar disorder.	Bipolar disorder and schizophrenia	2,111 European ancestry schizophrenia cases, 836 European ancestry bipolar disorder cases, 2,535 European ancestry controls	NA	9q22.31	SPTLC1, ROR2	rs7872515-?	NR	6E-7		1.39	[NR]	Affymetrix [745006]	N
1308	chr9	94823126	94823127	rs58909848	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	9q22.31		rs58909848-A	0.2952	9E-6		1.234		NR [11110260] (imputed)	N
1308	chr9	94825664	94825665	rs80336008	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	9q22.31		rs80336008-A	0.2885	9E-6		1.235		NR [11110260] (imputed)	N
1308	chr9	94829307	94829308	rs10992220	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	9q22.31		rs10992220-A	0.2975	9E-6		1.233		NR [11110260] (imputed)	N
1308	chr9	94829653	94829654	rs12235310	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	9q22.31		rs12235310-A	0.2972	8E-6		1.235		NR [11110260] (imputed)	N
1308	chr9	94829904	94829905	rs12235495	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	9q22.31		rs12235495-A	0.2973	8E-6		1.234		NR [11110260] (imputed)	N
1308	chr9	94835917	94835917	rs139179848	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	9q22.31		rs139179848-AT	0.2967	7E-6		1.237		NR [11110260] (imputed)	N
1308	chr9	94836222	94836223	rs10992222	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	9q22.31		rs10992222-T	0.2961	6E-6		1.239		NR [11110260] (imputed)	N
1308	chr9	94836388	94836389	rs79161841	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	9q22.31		rs79161841-A	0.2961	6E-6		1.239		NR [11110260] (imputed)	N
1308	chr9	94837831	94837832	rs11533009	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	9q22.31		rs11533009-A	0.295	5E-6		1.242		NR [11110260] (imputed)	N
1308	chr9	94839128	94839129	rs77450572	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	9q22.31		rs77450572-T	0.2961	6E-6		1.239		NR [11110260] (imputed)	N
1308	chr9	94839372	94839373	rs74981514	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	9q22.31		rs74981514-A	0.2969	7E-6		1.237		NR [11110260] (imputed)	N
1308	chr9	94842510	94842511	rs59856128	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	9q22.31		rs59856128-A	0.2961	6E-6		1.239		NR [11110260] (imputed)	N
1308	chr9	94842714	94842715	rs16908135	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	9q22.31		rs16908135-C	0.2956	9E-6		1.234		NR [11110260] (imputed)	N
1308	chr9	94844149	94844150	rs16908137	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	9q22.31		rs16908137-C	0.2969	7E-6		1.237		NR [11110260] (imputed)	N
1308	chr9	94853007	94853008	rs3858090	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	9q22.31		rs3858090-G	0.2964	8E-6		1.234		NR [11110260] (imputed)	N
1308	chr9	94854625	94854626	rs59183854	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	9q22.31		rs59183854-A	0.2971	9E-6		1.233		NR [11110260] (imputed)	N
1308	chr9	94854794	94854795	rs114749238	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	9q22.31		rs114749238-A	0.2971	9E-6		1.233		NR [11110260] (imputed)	N
1308	chr9	94856516	94856517	rs10992230	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	9q22.31		rs10992230-C	0.2963	8E-6		1.235		NR [11110260] (imputed)	N
1308	chr9	94856818	94856819	rs7862826	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	9q22.31		rs7862826-T	0.2963	8E-6		1.235		NR [11110260] (imputed)	N
1308	chr9	94862322	94862323	rs143330048	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	9q22.31		rs143330048-A	0.2968	8E-6		1.235		NR [11110260] (imputed)	N
1308	chr9	94866735	94866736	rs4641129	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	9q22.31		rs4641129-A	0.2956	5E-6		1.242		NR [11110260] (imputed)	N
1308	chr9	94871929	94871930	rs143676004	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	9q22.31		rs143676004-T	0.2959	5E-6		1.24		NR [11110260] (imputed)	N
1308	chr9	94872052	94872053	rs138964859	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	9q22.31		rs138964859-A	0.2958	5E-6		1.241		NR [11110260] (imputed)	N
1308	chr9	94875979	94875980	rs10992233	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	9q22.31		rs10992233-G	0.2965	8E-6		1.235		NR [11110260] (imputed)	N
1308	chr9	94888836	94888837	rs12683519	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	9q22.31		rs12683519-T	0.2763	5E-6		1.247		NR [11110260] (imputed)	N
1308	chr9	94892813	94892814	rs10992242	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	9q22.31		rs10992242-T	0.276	8E-6		1.242		NR [11110260] (imputed)	N
1308	chr9	94895093	94895094	rs139068042	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	9q22.31		rs139068042-C	0.276	6E-6		1.245		NR [11110260] (imputed)	N
1309	chr9	94896363	94896364	rs10992246	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	9q22.31		rs10992246-G	0.2769	3E-6		1.252		NR [11110260] (imputed)	N
1309	chr9	94897050	94897051	rs10992248	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	9q22.31		rs10992248-T	0.2757	5E-6		1.246		NR [11110260] (imputed)	N
1309	chr9	94897653	94897654	rs74658034	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	9q22.31		rs74658034-G	0.2762	5E-6		1.246		NR [11110260] (imputed)	N
1309	chr9	94902360	94902361	rs59232045	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	9q22.31		rs59232045-A	0.2875	1E-6		1.259		NR [11110260] (imputed)	N
1309	chr9	94904697	94904697	rs3215938	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	9q22.31		rs3215938-TG	0.2718	4E-6		1.249		NR [11110260] (imputed)	N
1309	chr9	94907007	94907008	rs2274921	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	9q22.31		rs2274921-G	0.3987	6E-6		1.227		NR [11110260] (imputed)	N
1309	chr9	94909374	94909375	rs2282199	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	9q22.31		rs2282199-A	0.2858	7E-7		1.266		NR [11110260] (imputed)	N
1309	chr9	94909750	94909751	rs2282201	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	9q22.31		rs2282201-A	0.2858	7E-7		1.265		NR [11110260] (imputed)	N
1309	chr9	94911034	94911035	rs57413357	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	9q22.31		rs57413357-G	0.2857	1E-6		1.259		NR [11110260] (imputed)	N
1309	chr9	94912523	94912524	rs10992252	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	9q22.31		rs10992252-T	0.2856	1E-6		1.261		NR [11110260] (imputed)	N
1309	chr9	94920494	94920495	rs10465156	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	9q22.31		rs10465156-A	0.2855	6E-6		1.239		NR [11110260] (imputed)	N
1309	chr9	94923945	94923946	rs117574354	32066700	Zhang R	2020-02-05	Transl Psychiatry	Genome-wide study of immune biomarkers in cerebrospinal fluid and serum from patients with bipolar disorder and controls.	Serum immune biomarker levels	184 Scandinavian ancestry bipolar disorder cases, 107 Scandinavian ancestry controls	NA	9q22.31	SPTLC1, ROR2	rs117574354-C	0.015	3E-9	(YKL-40)	25.396	NR unit increase	Affymetrix, Illumina [> 5000000] (imputed)	N
1309	chr9	94927734	94927735	rs7849530	25140149	Hohman TJ	2014-08-04	Front Aging Neurosci	Genetic variation modifies risk for neurodegeneration based on biomarker status.	Left inferior lateral ventricle volume (Cerebrospinal fluid biomarker status interaction)	382 European ancestry mild cognitive impairment cases, 114 European ancestry Alzheimer's disease cases, 194 European ancestry controls	NA	9q22.31	SPTLC1	rs7849530-?		3E-10	(Dilation, amyloid positive)	6.4	[NR] unit increase interaction	Illumina [296267]	N
1309	chr9	94937213	94937214	rs145375166	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9q22.31		rs145375166-?	NR	3E-16				NR [~ 8900000] (imputed)	N
1309	chr9	94983118	94983119	rs147121504	31609978	Huang L	2019-10-14	PLoS Genet	Genetic factors define CPO and CLO subtypes of nonsyndromicorofacial cleft.	Nonsyndromic cleft palate	930 Southern Han Chinese ancestry cases, 5,048 Southern Han Chinese ancestry controls	1,141 Han Chinese ancestry cases, 5,097 Han Chinese ancestry controls	9q22.31	IARS	rs147121504-C	0.90146	2E-6		1.4684289	NR	Illumina [at least 870261] (imputed)	N
1309	chr9	94988116	94988117	rs186421274	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	9q22.31	IARS, LINC00475, MIR3651, SNORA84, NOL8, CENPP, OGN, OMD, ASPN, ECM2, MIR4670, IPPK, LOC100128361, BICD2, LOC101929748, ANKRD19P, ZNF484	rs186421274-?		9E-6	(heterogeneous)	0.603	[0.34-0.87] unit increase	Illumina [1492601] (imputed)	N
1309	chr9	94988116	94988117	rs186421274	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	9q22.31	IARS, LINC00475, MIR3651, SNORA84, NOL8, CENPP, OGN, OMD, ASPN, ECM2, MIR4670, IPPK, LOC100128361, BICD2, LOC101929748, ANKRD19P, ZNF484	rs186421274-?		6E-6	(dominant)	0.613	[NR] unit increase	Illumina [1492601] (imputed)	N
1309	chr9	94988116	94988117	rs186421274	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	9q22.31	IARS, LINC00475, MIR3651, SNORA84, NOL8, CENPP, OGN, OMD, ASPN, ECM2, MIR4670, IPPK, LOC100128361, BICD2, LOC101929748, ANKRD19P, ZNF484	rs186421274-?		6E-6	(additive)	0.604	[0.34-0.86] unit increase	Illumina [1492601] (imputed)	N
1310	chr9	95047606	95047607	rs10820965	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ASPN	5,362 Icelandic ancestry individuals	NA	9q22.31		rs10820965-T	0.3621	6E-66		0.314074	[0.28-0.35] unit decrease	Illumina [7506463] (imputed)	N
1310	chr9	95055428	95055429	rs10820966	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CD34	5,356 Icelandic ancestry individuals	NA	9q22.31		rs10820966-T	0.3624	2E-18		0.168091	[0.13-0.21] unit decrease	Illumina [7506463] (imputed)	N
1310	chr9	95092012	95092013	rs7867909	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	9q22.31	NR	rs7867909-G	0.6375	5E-12	(CD34, 9023_9_3)	0.17473228	[0.13-0.22] unit increase	Illumina [> 1000000] (imputed)	N
1310	chr9	95092012	95092013	rs7867909	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	9q22.31	NR	rs7867909-G	0.6375	4E-9	(NCMAP, 14614_41_3)	0.15038073	[0.1-0.2] unit increase	Illumina [> 1000000] (imputed)	N
1310	chr9	95092012	95092013	rs7867909	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	9q22.31	NR	rs7867909-G	0.6375	2E-40	(ASPN, 6451_64_3)	0.3264993	[0.28-0.37] unit increase	Illumina [> 1000000] (imputed)	N
1311	chr9	95180374	95180375	rs3118008	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	9q22.31		rs3118008-?	NR	3E-11				NR [~ 8900000] (imputed)	N
1311	chr9	95181627	95181628	rs2761679	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	9q22.31	CENPP	rs2761679-A	0.6056	8E-12		0.1884	[0.13-0.24] mmHg increase	Affymetrix [NR] (imputed)	N
1311	chr9	95181627	95181628	rs2761679	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	9q22.31	CENPP	rs2761679-A	0.6077	2E-10		0.1275	[0.088-0.167] mmHg increase	Affymetrix [NR] (imputed)	N
1311	chr9	95187379	95187380	rs2516568	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q22.31	ASPN, CENPP	rs2516568-T	0.323	2E-79	(Asporin, ASPN.6451.64.3)	0.47	[0.41-0.53] unit decrease	Affymetrix [10572788] (imputed)	N
1311	chr9	95187379	95187380	rs2516568	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q22.31	ASPN, CENPP	rs2516568-T	0.323	2E-66	(Hematopoietic progenitor cell antigen CD34, CD34.9023.9.3)	0.43	[0.37-0.49] unit decrease	Affymetrix [10572788] (imputed)	N
1311	chr9	95201539	95201540	rs7045409	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	9q22.31	CENPP	rs7045409-A	0.3702	9E-13		0.1823	[0.13-0.23] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1311	chr9	95219247	95219248	rs3174352	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	9q22.31	CENPP	rs3174352-A	0.4641	3E-9		0.0189	[0.013-0.025] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1311	chr9	95219247	95219248	rs3174352	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	9q22.31	NR	rs3174352-A	0.5638	8E-6	(men)	0.0226	[0.013-0.033] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1311	chr9	95223979	95223980	rs7033979	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	9q22.31		rs7033979-G	NR	7E-10		0.0136	[0.0093-0.0179] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1311	chr9	95228662	95228663	rs41278695	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q22.31	NR	rs41278695-T	0.011	2E-20	(Asporin, ASPN.6451.64.3)	1.11	[0.87-1.35] unit decrease	Affymetrix [10572788] (imputed)	N
1311	chr9	95265684	95265685	rs73520599	29885931	Langefeld CD	2018-06-06	Kidney Int	Genome-wide association studies suggest that APOL1-environment interactions more likely trigger kidney disease in African Americans with nondiabetic nephropathy than strong APOL1-second gene interactions.	End-stage renal disease	1,749 African American ESRD cases, 1,136 African American controls, 901 African American lupus nephritis-ESRD cases, 520 African American systemic lupus erythrematosus without nephropathy controls	NA	9q22.31	CENPP	rs73520599-?		3E-6		1.51	[1.27-1.79]	Illumina [NR]	N
1311	chr9	95279531	95279532	rs111927950	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NCMAP	5,345 Icelandic ancestry individuals	NA	9q22.31		rs111927950-C	0.02139	1E-15		0.494297	[0.37-0.62] unit decrease	Illumina [7506463] (imputed)	N
1311	chr9	95283886	95283887	rs2131919	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	9q22.31	CENPP	rs2131919-A	0.835733	1E-10		0.0172675	[0.012-0.023] unit decrease	Affymetrix [NR] (imputed)	N
1312	chr9	95299148	95299149	rs79072821	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q22.31	NR	rs79072821-T	0.086	1E-32	(Hematopoietic progenitor cell antigen CD34, CD34.9023.9.3)	0.56	[0.46-0.66] unit decrease	Affymetrix [10572788] (imputed)	N
1312	chr9	95303052	95303053	rs34768785	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	9q22.31	CENPP	rs34768785-CA	0.7126	1E-9		0.043	[0.029-0.057] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1312	chr9	95316358	95316359	rs7852510	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	9q22.31	CENPP	rs7852510-G	NR	3E-8		0.0177774	[0.011-0.024] unit decrease	Affymetrix [127266] (imputed)	N
1312	chr9	95341140	95341141	rs534245958	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris heterochromicity	329 South Asian ancestry individuals		9q22.31	MYCBP2	rs534245958-T	0.017	5E-6		1.748	[1.01-2.48] unit decrease	Illumina [640625] (imputed)	N
1312	chr9	95375447	95375448	rs72754495	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial squamous cell lung carcinoma	367 European ancestry cases, 31,563 European ancestry controls	NA	9q22.31	IPPK	rs72754495-A	0.007	8E-8		7.23	[3.51-14.90]	Illumina [7959153] (imputed)	N
1312	chr9	95380725	95380726	rs2148537	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	9q22.31		rs2148537-A	NR	1E-8		0.0151	[0.01-0.02] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
1312	chr9	95382296	95382297	rs12686780	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	9q22.31		rs12686780-T	NR	3E-8		0.014	[0.0091-0.0189] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
1312	chr9	95382296	95382297	rs12686780	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	9q22.31	NR	rs12686780-T	NR	2E-9		0.0195	[0.013-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
1312	chr9	95382296	95382297	rs12686780	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	9q22.31	NR	rs12686780-T	0.174307	1E-13		0.01805	[0.013-0.023] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
1312	chr9	95382296	95382297	rs12686780	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	9q22.31	CENPP	rs12686780-C	0.825	1E-10		0.0161543	[0.011-0.021] unit increase	Affymetrix [NR] (imputed)	N
1312	chr9	95382296	95382297	rs12686780	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	9q22.31		rs12686780-?	NR	1E-11				NR [~ 8900000] (imputed)	N
1312	chr9	95387982	95387983	rs7043114	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	9q22.31	IPPK	rs7043114-T	0.56	2E-22		0.029	[0.023-0.035] unit decrease	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
1312	chr9	95393048	95393049	rs1323523	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RIPK2	5,352 Icelandic ancestry individuals	NA	9q22.31		rs1323523-A	0.1481	3E-12		0.179712	[0.13-0.23] unit increase	Illumina [7506463] (imputed)	N
1312	chr9	95393048	95393049	rs1323523	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NCMAP	5,345 Icelandic ancestry individuals	NA	9q22.31		rs1323523-A	0.1481	2E-34		0.3053	[0.26-0.35] unit increase	Illumina [7506463] (imputed)	N
1313	chr9	95429119	95429120	rs9969804	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	9q22.31	IPPK	rs9969804-A	0.44	8E-17		0.03	[NR] unit increase	Affymetrix, Illumina [2834208] (imputed)	N
1313	chr9	95432028	95432029	rs754600	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	9q22.31		rs754600-A	NR	4E-12		0.0162	[0.012-0.021] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
1313	chr9	95432028	95432029	rs754600	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	9q22.31		rs754600-A	NR	2E-10		0.0155	[0.011-0.02] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
1313	chr9	95432028	95432029	rs754600	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	9q22.31		rs754600-A	NR	1E-12		0.0152	[0.011-0.019] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
1313	chr9	95433829	95433830	rs10992394	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	9q22.31		rs10992394-A	NR	2E-10		0.0117	[0.0082-0.0152] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1313	chr9	95433829	95433830	rs10992394	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	9q22.31	NR	rs10992394-A	0.229892	1E-16		0.017993	[0.014-0.022] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1313	chr9	95433844	95433845	rs13284106	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	9q22.31	NR	rs13284106-?	NR	3E-11				Affymetrix [~ 8270000] (imputed)	N
1313	chr9	95434400	95434401	rs12683776	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9q22.31		rs12683776-?	NR	4E-47				NR [~ 8900000] (imputed)	N
1313	chr9	95434421	95434422	rs200560216	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	9q22.31		rs200560216-G	NR	9E-11		0.0151	[0.011-0.02] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
1313	chr9	95434421	95434422	rs200560216	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	9q22.31	IPPK, BICD2	rs200560216-?	NR	6E-11		0.023954876	[0.017-0.031] unit decrease	Illumina [27896057] (imputed)	N
1313	chr9	95434421	95434422	rs200560216	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	9q22.31	IPPK	rs200560216-G	0.4544	4E-6		0.035	[0.02-0.05] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1313	chr9	95437131	95437132	rs10992396	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	9q22.31		rs10992396-?	NR	6E-20				NR [~ 8900000] (imputed)	N
1313	chr9	95437183	95437184	rs145144930	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia	11,197 European ancestry low myopic cases, 21,416 European ancestry emmetropia controls	NA	9q22.31	NR	rs145144930-?	NR	1E-6		0.770418	[0.46-1.08] unit increase	NR [13958389] (imputed)	N
1313	chr9	95440627	95440628	rs10992404	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	9q22.31		rs10992404-C	NR	3E-12		0.0148	[0.011-0.019] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1313	chr9	95444799	95444800	rs10992408	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	9q22.31	NR	rs10992408-G	0.17	2E-22		0.024	[0.019-0.029] unit increase	Affymetrix [2446094] (imputed)	N
1313	chr9	95444799	95444800	rs10992408	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	9q22.31	NR	rs10992408-G	0.17	5E-8				Affymetrix [2446094] (imputed)	N
1313	chr9	95472583	95472584	rs12686771	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	9q22.31	NR	rs12686771-?	NR	2E-19				Affymetrix [~ 8270000] (imputed)	N
1313	chr9	95472583	95472584	rs12686771	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	9q22.31	NR	rs12686771-T	0.1622	5E-12		0.0164	[0.012-0.021] unit increase	NR [~ 27400000] (imputed)	N
1313	chr9	95476440	95476441	rs7862106	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	9q22.31	BICD2	rs7862106-G	NR	3E-9		0.0198618	[0.013-0.026] unit decrease	Affymetrix [321016] (imputed)	N
1313	chr9	95483502	95483503	rs10992433	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q22.31	NR	rs10992433-G	0.275131	6E-14				Affymetrix, Illumina [23114412] (imputed)	N
1313	chr9	95489670	95489671	rs755209	33888516	Zheng T	2021-04-22	Gut	Genome-wide analysis of 944 133 individuals provides insights into the etiology of haemorrhoidal disease.	Haemorrhoidal disease	218,920 European ancestry cases, 725,213 European ancestry controls	NA	9q22.31	BICD2	rs755209-?	0.2767	3E-8		1.02	[1.02-1.03]	Affymetrix, Illumina [8494288] (imputed)	N
1313	chr9	95494446	95494447	rs10992437	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q22.31	NR	rs10992437-A	0.259563	2E-17				Affymetrix, Illumina [24649327] (imputed)	N
1313	chr9	95496795	95496796	rs533114253	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	9q22.31	BICD2	rs533114253-C	0.241901	6E-12		0.018354747	[0.013-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1313	chr9	95496795	95496796	rs533114253	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	9q22.31	BICD2	rs533114253-C	0.241935	3E-9		0.015911505	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1313	chr9	95496795	95496795	rs746979180	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	9q22.31	NR	rs746979180-D	0.241399	3E-10		0.015778	[0.011-0.021] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
1313	chr9	95509732	95509733	rs10992447	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	9q22.31	NR	rs10992447-T	0.1621	9E-20		0.0218	[0.017-0.027] unit increase	NR [~ 27400000] (imputed)	N
1313	chr9	95512200	95512201	rs12236754	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	9q22.31	BICD2	rs12236754-A	0.1753	2E-22		0.0243	[0.019-0.029] unit decrease	Affymetrix [18391927] (imputed)	N
1313	chr9	95513421	95513422	rs149049262	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	9q22.31	BICD2	rs149049262-T	NR	4E-8		0.0180859	[0.012-0.025] unit increase	Affymetrix [319769] (imputed)	N
1313	chr9	95513421	95513422	rs149049262	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	9q22.31	BICD2	rs149049262-T	NR	4E-8		0.0181973	[0.012-0.025] unit increase	Affymetrix [319769] (imputed)	N
1313	chr9	95517298	95517299	rs7850871	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q22.31	NR	rs7850871-G	0.309304	1E-16				Affymetrix, Illumina [24588908] (imputed)	N
1313	chr9	95519622	95519623	rs9775970	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	9q22.31	BICD2	rs9775970-A	0.228937	1E-12		0.018933691	[0.014-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1313	chr9	95527600	95527601	rs76076355	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	9q22.31	NR	rs76076355-?	NR	2E-6		0.033955	[0.02-0.048] unit increase	Affymetrix [805426] (imputed)	N
1313	chr9	95538572	95538573	rs143554698	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	9q22.31	BICD2	rs143554698-T	NR	6E-11		0.0265391	[0.019-0.034] unit decrease	Affymetrix [321016] (imputed)	N
1313	chr9	95538572	95538573	rs143554698	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	9q22.31	NR	rs143554698-C	0.859421	2E-12		0.00820066	[0.0058-0.0106] unit increase	Affymetrix [16582909] (imputed)	N
1313	chr9	95538572	95538573	rs143554698	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	9q22.31	NR	rs143554698-C	0.859421	1E-6		0.00612426	[0.0035-0.0088] unit increase	Affymetrix [16582965] (imputed)	N
1313	chr9	95542653	95542654	rs12236788	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	9q22.31		rs12236788-A	0.231343	5E-10		0.016708618	[0.011-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1313	chr9	95547649	95547650	rs72758547	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NCMAP	5,345 Icelandic ancestry individuals	NA	9q22.31		rs72758547-T	0.05693	1E-40		0.514822	[0.44-0.59] unit decrease	Illumina [7506463] (imputed)	N
1313	chr9	95547724	95547725	rs10120915	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	9q22.31	NR	rs10120915-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1313	chr9	95551030	95551030	rs372920668	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	9q22.31	ANKRD19P	rs372920668-AAAAAT	NR	3E-9		0.0168217	[0.011-0.022] unit decrease	Affymetrix [321016] (imputed)	N
1314	chr9	95559504	95559505	rs10992471	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	9q22.31	ANKRD19P	rs10992471-A	NR	5E-8		0.0171614	[0.011-0.023] unit decrease	Affymetrix [321114] (imputed)	N
1314	chr9	95559504	95559505	rs10992471	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue/subcutaneous adipose tissue ratio	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	9q22.31	BICD2, ZNF484	rs10992471-G	0.57	2E-6	(overall)			Affymetrix, Illumina [2500000] (imputed)	N
1314	chr9	95559851	95559852	rs1810696	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	9q22.31	ANKRD19P	rs1810696-A	NR	2E-9		0.0203991	[0.014-0.027] unit increase	Affymetrix [319769] (imputed)	N
1314	chr9	95559851	95559852	rs1810696	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	9q22.31	ANKRD19P	rs1810696-A	NR	2E-9		0.020566	[0.014-0.027] unit increase	Affymetrix [319769] (imputed)	N
1314	chr9	95568229	95568230	rs1974004	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	9q22.31	NA	rs1974004-T	0.1528	4E-12		0.0173	[0.012-0.022] unit increase	NR [~ 27400000] (imputed)	N
1314	chr9	95573675	95573676	rs116609693	29317604	Liu D	2018-01-10	Transl Psychiatry	Beta-defensin 1, aryl hydrocarbon receptor and plasma kynurenine in major depressive disorder: metabolomics-informed genomics.	Plasma kynurenine to tryptophan ratio in major depressive disorder	290 European ancestry individuals	NA	9q22.31	ANKRD19P	rs116609693-T	0.03	5E-7		1.35	[NR] unit decrease	Illumina [~ 7500000] (imputed)	N
1314	chr9	95587051	95587052	rs116877119	33223526	Hong S	2020-11-22	Transl Psychiatry	Genome-wide association study of Alzheimer's disease CSF biomarkers in the EMIF-AD Multimodal Biomarker Discovery dataset.	Central cerebrospinal fluid amyloid beta 42 to 40 ratio	677 European ancestry individuals	NA	9q22.31		rs116877119-G	0.9592	5E-6		0.105	[0.06-0.15] unit increase	Illumina [7778465] (imputed)	N
1314	chr9	95605066	95605067	rs10992489	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	9q22.31	ZNF484	rs10992489-C	0.644881	2E-23		0.0193216	[0.016-0.023] unit increase	NR [13737936] (imputed)	N
1314	chr9	95605066	95605067	rs10992489	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	9q22.31		rs10992489-?	NR	1E-21				NR [~ 8900000] (imputed)	N
1314	chr9	95640170	95640171	rs117360596	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	9q22.31		rs117360596-?	NR	6E-12		0.0435799	[0.031-0.056] unit decrease	Affymetrix [20259828] (imputed)	N
1314	chr9	95644103	95644104	rs10761177	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	9q22.31		rs10761177-?	NR	1E-17		0.0182781	[0.014-0.023] unit increase	Affymetrix [20259828] (imputed)	N
1314	chr9	95648576	95648577	rs72741016	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial squamous cell lung carcinoma	367 European ancestry cases, 31,563 European ancestry controls	NA	9q22.31	RP11-526D8.7	rs72741016-A	0.024	9E-6		2.42	[1.64-3.58]	Illumina [7959153] (imputed)	N
1314	chr9	95667861	95667862	rs6479436	34162658	Quinn MC	2021-06-23	Cancer Epidemiol Biomarkers Prev	Identification of a locus near ULK1 associated with progression-free survival in ovarian cancer.	Progression free survival in serous epithelial ovarian cancer treated with carboplatin and paclitaxel	1,751 European ancestry individuals	NA	9q22.31	NR	rs6479436-A		7E-7		0.2135	[0.13-0.3] unit decrease	Illumina [12759548] (imputed)	N
1314	chr9	95679008	95679009	rs7875611	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	9q22.31	NR	rs7875611-T	NR	6E-6		1.05	[NR]	Illumina [7158791] (imputed)	N
1315	chr9	95684696	95684697	rs4557765	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	9q22.31		rs4557765-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1315	chr9	95703800	95703801	rs12378192	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	9q22.31		rs12378192-C	0.044343	1E-15		0.043828156	[0.033-0.055] unit decrease	Affymetrix [93095623] (imputed)	N
1315	chr9	95734706	95734707	rs4302906	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	9q22.31	NR	rs4302906-?	NR	7E-6				Illumina [at least 7383741] (imputed)	N
1315	chr9	95753945	95753946	rs10992569	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	9q22.31	NR	rs10992569-G	0.95889	4E-13		0.035163	[0.026-0.045] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1315	chr9	95780908	95780909	rs10992580	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	9q22.31	FGD3	rs10992580-C	0.040099	1E-11		0.039299767	[0.028-0.051] unit decrease	Affymetrix [93095623] (imputed)	N
1315	chr9	95783926	95783927	rs72741057	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q22.31	NR	rs72741057-G	0.957505	2E-11				Affymetrix, Illumina [17210439] (imputed)	N
1315	chr9	95806364	95806365	rs4573339	33657282	Liu X	2021-03-03	Aging Cell	Integrated genetic analyses revealed novel human longevity loci and reduced risks of multiple diseases in a cohort study of 15,651 Chinese individuals.	Longevity	11,045 Chinese ancestry individuals	NA	9q22.31	FGD3	rs4573339-G	NR	4E-6		0.1536	[0.089-0.219] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1316	chr9	95826383	95826384	rs10821061	32568366	Raghavan NS	2020-06-22	JAMA Neurol	Association Between Common Variants in RBFOX1, an RNA-Binding Protein, and Brain Amyloidosis in Early and Preclinical Alzheimer Disease.	Brain amyloid deposition (PET imaging)	4,120 Europea ancestry individuals, 89 African American individuals, 105 Hispanic individuals	NA	9q22.31	NR	rs10821061-G		7E-6		0.4663	[0.26-0.67] unit decrease	Illumina [NR] (imputed)	N
1316	chr9	95840478	95840479	rs10821066	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	9q22.31	SUSD3	rs10821066-G	0.160515	3E-10		0.019408837	[0.013-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1316	chr9	95856027	95856028	rs138108628	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9q22.31		rs138108628-?	NR	6E-9				NR [~ 8900000] (imputed)	N
1316	chr9	95857649	95857650	rs12378451	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	9q22.31	NR	rs12378451-?	NR	9E-9				Affymetrix [NR]	N
1316	chr9	95868101	95868102	rs76774472	31560688	Geidenstam N	2019-09-27	PLoS One	Using metabolite profiling to construct and validate a metabolite risk score for predicting future weight gain.	Malate levels	1,937 individuals	NA	9q22.31	C9orf89	rs76774472-T	0.014	5E-7		0.8944	[0.55-1.24] unit increase	Affymetrix, Illumina [up to 22000000] (imputed)	N
1316	chr9	95883784	95883785	rs7033638	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Lactate dehydrogenase levels	126,319 Japanese ancestry individuals	NA	9q22.31	NINJ1	rs7033638-?	NR	1E-14		0.03861	[0.029-0.048] unit decrease novel	Illumina [6108953] (imputed)	N
1316	chr9	95886050	95886051	rs3793662	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD25 on naive-mature B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	9q22.31		rs3793662-T	0.77595	5E-11		0.1953	[0.14-0.25] unit decrease	Illumina [18238311] (imputed)	N
1316	chr9	95886050	95886051	rs3793662	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD25 on memory B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	9q22.31		rs3793662-T	0.77595	2E-8		0.1626	[0.11-0.22] unit decrease	Illumina [18238311] (imputed)	N
1316	chr9	95886050	95886051	rs3793662	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD25 on IgD- CD38dim B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	9q22.31		rs3793662-T	0.77595	4E-9		0.1698	[0.11-0.23] unit decrease	Illumina [18238311] (imputed)	N
1316	chr9	95886050	95886051	rs3793662	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD25 on IgD+ CD38+ B cell	3,656 Sardinian (founder/genetic isolate) ancestry individuals	NA	9q22.31		rs3793662-T	0.77589	4E-10		0.1813	[0.12-0.24] unit decrease	Illumina [18238289] (imputed)	N
1316	chr9	95886050	95886051	rs3793662	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD25 on IgD+ CD24- B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	9q22.31		rs3793662-T	0.77595	1E-10		0.1898	[0.13-0.25] unit decrease	Illumina [18238311] (imputed)	N
1316	chr9	95886050	95886051	rs3793662	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD25 on CD24+ CD27+ B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	9q22.31		rs3793662-T	0.77595	4E-8		0.1594	[0.1-0.22] unit decrease	Illumina [18238311] (imputed)	N
1316	chr9	95886050	95886051	rs3793662	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD25 on B cell	3,660 Sardinian (founder/genetic isolate) ancestry individuals	NA	9q22.31		rs3793662-T	0.77599	2E-8		0.1654	[0.11-0.22] unit decrease	Illumina [18238700] (imputed)	N
1316	chr9	95887319	95887320	rs2275848	23563609	Wheeler E	2013-04-07	Nat Genet	Genome-wide SNP and CNV analysis identifies common and low-frequency variants associated with severe early-onset obesity.	Obesity (early onset extreme)	1,509 European ancestry cases, 5,380 European ancestry controls	971 European ancestry cases, 1,990 European ancestry controls	9q22.31	NINJ1	rs2275848-T	0.82	1E-6		1.23	[1.13-1.34]	Affymetrix [~ 2000000] (imputed)	N
1316	chr9	95889159	95889160	rs60629714	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD40 on CD14+ CD16- monocyte	3,629 Sardinian (founder/genetic isolate) ancestry individuals	NA	9q22.31		rs60629714-C	0.18347	5E-9		0.1864	[0.12-0.25] unit increase	Illumina [18218967] (imputed)	N
1316	chr9	95891461	95891462	rs11317529	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD25 on unswitched memory B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	9q22.31		rs11317529-C	0.69774	8E-9		0.1532	[0.1-0.21] unit decrease	Illumina [18238311] (imputed)	N
1316	chr9	95891461	95891462	rs11317529	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD25 on IgD+ CD38- B cell	3,642 Sardinian (founder/genetic isolate) ancestry individuals	NA	9q22.31		rs11317529-C	0.69757	1E-9		0.1634	[0.11-0.22] unit decrease	Illumina [18233845] (imputed)	N
1316	chr9	95892725	95892726	rs7018885	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	9q22.31		rs7018885-C	NR	6E-23		0.0221	[0.018-0.026] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
1316	chr9	95892725	95892726	rs7018885	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	9q22.31		rs7018885-C	NR	3E-15		0.0173	[0.013-0.022] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
1316	chr9	95892725	95892726	rs7018885	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	9q22.31	NINJ1	rs7018885-T	0.744942	9E-18		0.0038129	[0.0029-0.0047] unit increase	Affymetrix [13995440] (imputed)	N
1316	chr9	95892725	95892726	rs7018885	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	9q22.31	NINJ1	rs7018885-T	0.75	1E-22		9.82	z-score increase	Affymetrix [4314223] (imputed)	N
1316	chr9	95892725	95892726	rs7018885	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	9q22.31	NINJ1	rs7018885-T	0.75	9E-18		8.59	z-score increase	Affymetrix [4312306] (imputed)	N
1316	chr9	95894963	95894964	rs12342201	26838040	Kristjansson RP	2016-02-03	Nat Commun	Common and rare variants associating with serum levels of creatine kinase and lactate dehydrogenase.	Lactate dehydrogenase levels	98,585 Icelandic ancestry individuals	NA	9q22.31		rs12342201-A	0.4945	1E-12		0.034	unit decrease	Illumina [28300000] (imputed)	N
1316	chr9	95898530	95898531	rs7025554	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Citrate levels	115,068 European ancestry individuals	NA	9q22.31		rs7025554-C	0.953992	5E-11		0.0634251	[0.044-0.082] unit decrease	NR [11722792] (imputed)	N
1316	chr9	95898530	95898531	rs7025554	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	9q22.31	NR	rs7025554-T	NR	4E-11		0.0365	[0.026-0.047] unit decrease	Affymetrix [9000000] (imputed)	N
1316	chr9	95902594	95902595	rs1110236	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Aspartate aminotransferase levels	386,570 British ancestry individuals, 10,617 Asian or Asian British individuals, 7,426 Black or Black British individuals, 2,321 Chinese ancestry individuals	NA	9q22.31	NINJ1	rs1110236-?	NR	5E-18		0.0028	[0.002-0.0036] unit decrease	Affymetrix [21347608] (imputed)	N
1316	chr9	95902594	95902595	rs1110236	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Alanine aminotransferase levels	387,859 British ancestry individuals, 10,635 Asian or Asian British individuals, 7,468 Black or Black British individuals, 2,338 Chinese ancestry individuals	NA	9q22.31	NINJ1	rs1110236-?	NR	8E-12		0.0037	[0.0025-0.0049] unit decrease	Affymetrix [21347608] (imputed)	N
1316	chr9	95907106	95907107	rs2398827	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Tenofovir clearance in HIV infection	243 European ancestry cases, 149 African American cases, 100 Hispanic American cases, 9 unknown ancestry cases	NA	9q22.31	NR	rs2398827-?		3E-6	(Hispanic)			Illumina [~ 5190000] (imputed)	N
1316	chr9	95907106	95907107	rs2398827	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Tenofovir clearance in HIV infection	243 European ancestry cases, 149 African American cases, 100 Hispanic American cases, 9 unknown ancestry cases	NA	9q22.31	NR	rs2398827-?		2E-6	(Hispanic)			Illumina [~ 5190000] (imputed)	N
1316	chr9	95908591	95908592	rs117511681	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	9q22.31	NR	rs117511681-?	NR	2E-8				Illumina [7760689] (imputed)	N
1316	chr9	95930571	95930572	rs10821080	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	9q22.31	Intergenic	rs10821080-T	0.5066	1E-8	(MTAG)	0.0103	[0.0068-0.0138] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1317	chr9	95951476	95951477	rs10821083	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	9q22.31		rs10821083-T	0.38	3E-19		8.98	z score increase	Affymetrix [9061022] (imputed)	N
1317	chr9	95951476	95951477	rs10821083	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	9q22.31		rs10821083-T	0.38	2E-15		7.97	z score increase	Affymetrix [9061022] (imputed)	N
1317	chr9	95951476	95951477	rs10821083	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	9q22.31	TNIK	rs10821083-?		2E-14				NR [7428630] (imputed)	N
1317	chr9	95951476	95951477	rs10821083	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	9q22.31	WNK2, C9orf129	rs10821083-?		6E-11				NR [7428630] (imputed)	N
1317	chr9	95951936	95951937	rs10761199	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	9q22.31		rs10761199-T	0.4	5E-9		5.84	z score increase	Affymetrix [9061022] (imputed)	N
1317	chr9	95963716	95963717	rs75010070	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels	3,806 African American individuals	NA	9q22.31		rs75010070-?	NR	4E-6		0.21	[0.12-0.3] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1317	chr9	95991546	95991547	rs13290796	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	9q22.31	NR	rs13290796-T	0.1365	5E-13				NR [9056863] (imputed)	N
1317	chr9	96003434	96003435	rs12341303	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	9q22.31	Intergenic	rs12341303-A	0.5032	3E-12	(MTAG)	0.0115	[0.0084-0.0146] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1317	chr9	96011817	96011818	rs185182198	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9q22.31		rs185182198-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1317	chr9	96012084	96012085	rs10821097	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	9q22.31	Intergenic	rs10821097-A	0.2855	2E-9	(MTAG)	0.0153	[0.01-0.02] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1317	chr9	96019969	96019970	rs10761202	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	9q22.31		rs10761202-T	0.4946	4E-10		0.0088	[0.0061-0.0115] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1317	chr9	96019969	96019970	rs10761202	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	9q22.31	Intergenic	rs10761202-T	0.4946	2E-12	(MTAG)	0.0092	[0.0067-0.0117] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1317	chr9	96046086	96046087	rs147515244	33381925	Buchanan VL	2020-12-30	Pediatr Obes	Genome-wide association study identifying novel variant for fasting insulin and allelic heterogeneity in known glycemic loci in Chilean adolescents: The Santiago Longitudinal Study.	Fasting glucose	543 Chilean individuals	NA	9q22.31	WNK2	rs147515244-A	0.05	1E-6		6.727	[4-9.45] unit increase	Illumina [NR] (imputed)	N
1317	chr9	96047292	96047293	rs4743910	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Perceived sweetness of sucrose	686 European ancestry twins	NA	9q22.31	WNK2	rs4743910-T	0.88	8E-6		0.69	[0.4-0.98] unit increase	Illumina [5833901] (imputed)	N
1317	chr9	96053927	96053928	rs1889339	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	9q22.31	WNK2, C9orf129	rs1889339-G	0.19899999999999995	4E-6		1.065235		NR [9372253] (imputed)	N
1318	chr9	96117148	96117149	rs10761215	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	9q22.31		rs10761215-T	0.653074	1E-10		0.015313609	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1318	chr9	96149893	96149894	rs7036824	29422769	Shah RL	2018-02-05	Mol Vis	A genome-wide association study of corneal astigmatism: The CREAM Consortium.	Corneal astigmatism	9,293 European ancestry cases, 12,957 European ancestry controls, 4,349 Asian ancestry cases, 4,771 Asian ancestry controls	NA	9q22.31	C9orf129	rs7036824-C	0.06	9E-6		1.2048193	[1.11-1.3]	NR [~ 55000000] (imputed)	N
1318	chr9	96166381	96166382	rs4744239	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	9q22.31	BC039686	rs4744239-T	0.5758	5E-9		0.1152	[0.077-0.154] mmHg increase	Affymetrix [NR] (imputed)	N
1318	chr9	96174467	96174468	rs7031032	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9q22.31		rs7031032-?	NR	2E-21				NR [~ 8900000] (imputed)	N
1318	chr9	96178966	96178967	rs13287066	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	9q22.31	ENSG00000201074	rs13287066-A	NR	2E-8		0.016555836	[0.011-0.022] unit increase	Affymetrix [NR]	N
1318	chr9	96181074	96181075	rs10992729	31194737	Johnston KJA	2019-06-13	PLoS Genet	Genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	387,649 British ancestry individuals	NA	9q22.31	Y_RNA	rs10992729-C	0.3344	1E-9		0.0158	[0.011-0.021] unit increase	NR [NR]	N
1318	chr9	96182702	96182703	rs143399767	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	Fasting plasma glucose	15,226 British ancestry non-diabetics individuals from 6863 families, 948 British ancestry diabetic individuals from 6863 families.	NA	9q22.31	Y_RNA	rs143399767-C	0.0108	1E-8	(Non diabetics)	0.36156827	[0.24-0.49] mmol/L increase	Illumina [24111857] (imputed)	N
1318	chr9	96186489	96186490	rs12555047	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Pallidum volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	9q22.31	NR	rs12555047-?		2E-6				Illumina [4322238] (imputed)	N
1318	chr9	96190717	96190718	rs55766809	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	9q22.31	NR	rs55766809-T	NR	5E-9		5.853	z score increase	Affymetrix [10847151] (imputed)	N
1318	chr9	96191003	96191004	rs944990	25953783	Warrington NM	2015-05-07	Int J Epidemiol	A genome-wide association study of body mass index across early life and childhood.	Body mass index	9,377 children and adolescents	3,918 European ancestry children and adolescents	9q22.31	FAM120A, FAM120AOS	rs944990-C	0.723	6E-8	(age 8)	0.012	[0.0081-0.0159] unit decrease	Illumina [~ 2200000] (imputed)	N
1318	chr9	96196349	96196350	rs184829860	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	9q22.31	Intergenic	rs184829860-A	0.078	8E-10	(MTAG)	0.0153	[0.01-0.02] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1318	chr9	96200539	96200540	rs7036984	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	9q22.31	ENSG00000227603	rs7036984-G	NR	1E-8		0.010148	[0.0067-0.0136] unit increase	Affymetrix [18485882] (imputed)	N
1318	chr9	96203755	96203756	rs111370527	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	9q22.31		rs111370527-T	0.0785	2E-8		0.0151	[0.0098-0.0204] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1318	chr9	96204537	96204538	rs3901421	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	9q22.31	FAM120AOS	rs3901421-C	0.4871	8E-30		0.0215	[0.018-0.025] unit increase	Affymetrix [18391927] (imputed)	N
1319	chr9	96206998	96206999	rs3924389	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	9q22.31	Intergenic	rs3924389-G	0.4182	3E-8		0.0127	[0.0082-0.0172] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1319	chr9	96217446	96217447	rs7869969	33830993	Johnston KJA	2021-04-08	PLoS Genet	Sex-stratified genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	387,649 British ancestry individuals	NA	9q22.31	FAM120A	rs7869969-?	NR	1E-9			[NR]	NR [NR] (imputed)	N
1319	chr9	96217446	96217447	rs7869969	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Neuroticism	274,107 British ancestry individuals	NA	9q22.31	NR	rs7869969-G	0.3321	1E-8		0.01087	[0.0071-0.0146] unit decrease	NR [8968716] (imputed)	N
1319	chr9	96217446	96217447	rs7869969	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	9q22.31		rs7869969-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1319	chr9	96217446	96217447	rs7869969	26604143	Felix JF	2015-11-24	Hum Mol Genet	Genome-wide association analysis identifies three new susceptibility loci for childhood body mass index.	Childhood body mass index	34,744 European ancestry children	11,313 European ancestry children	9q22.31	FAM120A	rs7869969-G	0.33	2E-6		0.036	[0.02-0.052] unit increase	Affymetrix, Illumina [2499691] (imputed)	N
1319	chr9	96222616	96222617	rs10821129	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	9q22.31	NR	rs10821129-A	NR	9E-10		6.123	z score decrease	Affymetrix [10847151] (imputed)	N
1319	chr9	96223571	96223572	rs10821130	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Depression	at least 5,919 European ancestry cases, at least 130,691 European ancestry controls	634,037 European ancestry cases, 1,308,690 European ancestry controls	9q22.31	FAM120A	rs10821130-C	0.3489	5E-13		0.01711739	[0.012-0.022] unit increase	NR [9417325] (imputed)	N
1319	chr9	96225477	96225478	rs7023933	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	9q22.31		rs7023933-?	NR	8E-17		0.0298	unit decrease	NR [NR]	N
1319	chr9	96225477	96225478	rs7023933	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	9q22.31	NR	rs7023933-T	NR	1E-8		0.01848	[0.012-0.025] unit increase	Affymetrix [10847151] (imputed)	N
1319	chr9	96227099	96227100	rs10512225	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	9q22.31	Intergenic	rs10512225-A	0.4161	1E-10	(MTAG)	0.0108	[0.0075-0.0141] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1319	chr9	96228821	96228822	rs10821131	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	9q22.31	NR	rs10821131-?		5E-9	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
1319	chr9	96231170	96231171	rs10992746	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q22.31	NR	rs10992746-C	0.35719	4E-11				Affymetrix, Illumina [24588908] (imputed)	N
1319	chr9	96237372	96237373	rs6479487	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Major depressive disorder (MTAG)	at least 170,756 European ancestry cases, at least 329,443 European ancestry controls	NA	9q22.31	NR	rs6479487-T	0.8436	3E-8		0.03130111	[0.02-0.042] unit decrease	NR [NR]	N
1319	chr9	96238730	96238731	rs10821136	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	9q22.31	NR	rs10821136-T	0.3398	4E-8		0.0129686855	NR unit increase	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
1319	chr9	96239089	96239090	rs10992751	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	9q22.31	NR	rs10992751-T	0.332703	3E-13		0.014111	[0.01-0.018] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1319	chr9	96253438	96253439	rs10992756	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	9q22.31	FAM120A	rs10992756-T	NR	2E-10		0.019726846	[0.014-0.026] unit decrease	Affymetrix [NR]	N
1319	chr9	96254463	96254464	rs4744246	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	9q22.31	FAM120A	rs4744246-A	0.656346	2E-26		0.0157627	[0.013-0.019] unit decrease	Affymetrix [12370749]	N
1319	chr9	96262724	96262725	rs17532098	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	9q22.31	NR	rs17532098-T	NR	3E-9		0.02318	[0.016-0.031] unit increase	Affymetrix [10847151] (imputed)	N
1319	chr9	96262724	96262725	rs17532098	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling hurt	372,047 European ancestry individuals	NA	9q22.31	FAM120AOS	rs17532098-T	0.102583	3E-8		5.57	z score increase	NR [10847151] (imputed)	N
1319	chr9	96268477	96268478	rs78046549	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	9q22.31	NR	rs78046549-T	NR	3E-11		6.631	z score increase	Affymetrix [10847151] (imputed)	N
1319	chr9	96270236	96270237	rs12554020	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	9q22.31	NR	rs12554020-C	NR	6E-6		1.07	[NR]	Illumina [7158791] (imputed)	N
1319	chr9	96271366	96271367	rs10821147	29921221	Cha S	2018-06-19	BMC Genomics	Identification of five novel genetic loci related to facial morphology by genome-wide association studies.	Upper eyelid morphology	5,643 Korean ancestry individuals	1,926 Korean ancestry individuals	9q22.31	FAM120A	rs10821147-A	0.5	4E-6	(Tangent line angle of el4)	0.01	[NR] unit increase	Affymetrix [311944]	N
1319	chr9	96271751	96271752	rs4744250	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	9q22.31	NR	rs4744250-G	0.362823	1E-9		0.039716274	[0.027-0.053] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1319	chr9	96271751	96271752	rs4744250	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	9q22.31	Intergenic	rs4744250-A	0.3446	4E-16	(MTAG)	0.0196	[0.015-0.024] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1319	chr9	96271751	96271752	rs4744250	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	9q22.31	Intergenic	rs4744250-A	0.3446	9E-10		0.0183	[0.012-0.024] unit increase	Affymetrix, Illumina [10100000] (imputed)	N
1319	chr9	96272623	96272624	rs4744251	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Verbal-numerical reasoning	171,304 British ancestry individuals	NA	9q22.31		rs4744251-?	NR	2E-8				NR [7857346] (imputed)	N
1319	chr9	96301799	96301800	rs12376738	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms (MTAG)	955,012 individuals	NA	9q22.31	NR	rs12376738-?		2E-10				NR [520857]	N
1319	chr9	96301799	96301800	rs12376738	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms	688,809 individuals	NA	9q22.31	NR	rs12376738-?		2E-8				NR [11140414]	N
1319	chr9	96301799	96301800	rs12376738	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depression	688,809 European ancestry individuals	NA	9q22.31	NR	rs12376738-T	NR	2E-8		5.651	z score increase	Affymetrix [10847151] (imputed)	N
1319	chr9	96303592	96303593	rs78108956	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	9q22.31	NR	rs78108956-T	NR	5E-9		0.0333	[0.022-0.044] unit increase	Affymetrix [9000000] (imputed)	N
1319	chr9	96311255	96311256	rs10992783	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Coffee consumption	335,909 European ancestry individuals	39,924 European ancestry individuals	9q22.31	FAM120A	rs10992783-C	0.5831	2E-6		0.0071	[0.0042-0.01] unit increase	Affymetrix [~ 7740000] (imputed)	N
1319	chr9	96324151	96324152	rs77734990	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Anxiety	at least 23,606 European ancestry cases, at least 113,351 European ancestry controls	624,615 European ancestry cases, 1,310,854 European ancestry controls	9q22.31	FAM120A	rs77734990-G	0.09841	2E-10		0.023366736	[0.015-0.032] unit decrease	NR [9417325] (imputed)	N
1319	chr9	96327690	96327691	rs11975	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	9q22.31	FAM120AOS	rs11975-A	0.144253	4E-11		6.6	z score decrease	NR [10847151] (imputed)	N
1319	chr9	96330498	96330499	rs6479494	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms (MTAG)	955,012 individuals	NA	9q22.31	NR	rs6479494-?		2E-8				NR [520857]	N
1319	chr9	96334601	96334602	rs6479495	33169155	Bigdeli TB	2020-11-10	Schizophr Bull	Genome-Wide Association Studies of Schizophrenia and Bipolar Disorder in a Diverse Cohort of US Veterans.	Schizophrenia	37,759 European ancestry cases, 7,509 African American cases, 1,234 Latino cases, 22,778 East Asian ancestry cases, 91,590 European ancestry controls, 8,337 African American controls, 3,090 Latino controls, 35,362 East Asian ancestry controls	NA	9q22.31	PHF2	rs6479495-C	NR	4E-9		1.06	[1.04-1.08]	Affymetrix [up to 49134253] (imputed)	N
1319	chr9	96336789	96336790	rs10429558	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	9q22.31	intergenic	rs10429558-A	0.14431	6E-9		5.817	z score increase	Illumina [18485882] (imputed)	N
1320	chr9	96345327	96345328	rs10156602	34741163	Eijsbouts C	2021-11-05	Nat Genet	Genome-wide analysis of 53,400 people with irritable bowel syndrome highlights shared genetic pathways with mood and anxiety disorders.	Irritable bowel syndrome	53,400 European ancestry cases, 433,201 European ancestry controls	205,252 European ancestry cases, 1,384,055 European ancestry controls	9q22.31	NR	rs10156602-A	0.633	3E-15		0.02627686	[0.02-0.033] unit increase	Illumina [9885498] (imputed)	N
1320	chr9	96345327	96345328	rs10156602	30804566	Lane JM	2019-02-25	Nat Genet	Biological and clinical insights from genetics of insomnia symptoms.	Insomnia symptoms (never/rarely vs. usually)	129,270 European ancestry cases, 108,357 European ancestry controls	17,140 European ancestry cases, 61,850 European ancestry controls	9q22.31	PHF2	rs10156602-A	0.638126	7E-12		1.02	[1.01-1.03]	Affymetrix [14661600] (imputed)	N
1320	chr9	96345327	96345328	rs10156602	30804566	Lane JM	2019-02-25	Nat Genet	Biological and clinical insights from genetics of insomnia symptoms.	Insomnia symptoms (never/rarely vs. sometimes/usually)	345,022 European ancestry cases, 108,357 European ancestry controls	17,140 European ancestry cases, 61,850 European ancestry controls	9q22.31	PHF2	rs10156602-A	0.638126	2E-8		1.02	[1.01-1.03]	Affymetrix [14661600] (imputed)	N
1320	chr9	96345327	96345328	rs10156602	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	9q22.31		rs10156602-?	NR	4E-10				NR [~ 8900000] (imputed)	N
1320	chr9	96353484	96353485	rs10122014	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	9q22.31	NR	rs10122014-?	NR	4E-6		1520.4484	NR unit increase	Illumina [2379855]	N
1320	chr9	96357391	96357392	rs10116955	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	9q22.31	NR	rs10116955-?	NR	1E-10				Affymetrix [~ 8270000] (imputed)	N
1320	chr9	96360649	96360650	rs13291079	31518406	Abdellaoui A	2019-09-13	Hum Mol Genet	Phenome-wide investigation of health outcomes associated with genetic predisposition to loneliness.	Loneliness	511,280 European ancestry individuals	NA	9q22.31	PHF2	rs13291079-?	NR	2E-11		0.02	[0.014-0.026] unit increase	Affymetrix, Illumina [up to 14113458] (imputed)	N
1320	chr9	96361921	96361922	rs10761240	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	9q22.31	NR	rs10761240-G	0.6037	2E-12		1.0438414	[1.03-1.06]	Affymetrix, Illumina [NR] (imputed)	N
1320	chr9	96362114	96362115	rs10992797	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	9q22.31	PHF2	rs10992797-A	NR	9E-9		0.01718294	[0.011-0.023] unit increase	Affymetrix [NR]	N
1320	chr9	96365752	96365753	rs2895249	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	9q22.31	NR	rs2895249-A	NR	2E-8		0.0133	[0.0086-0.018] unit decrease	Affymetrix [10847151] (imputed)	N
1320	chr9	96366646	96366647	rs2989751	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	9q22.31		rs2989751-A	0.244	3E-8		0.0092	[0.0059-0.0125] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1320	chr9	96373817	96373818	rs10992800	29970889	Day FR	2018-07-03	Nat Commun	Elucidating the genetic basis of social interaction and isolation.	Loneliness (MTAG)	487,647 European ancestry individuals	NA	9q22.31	WNK2, C9orf129, FAM120AOS, FAM120A, PHF2, MIR4291	rs10992800-G	0.603196	1E-13		0.015511454	[0.011-0.02] unit increase	NR [NR] (imputed)	N
1320	chr9	96373817	96373818	rs10992800	29970889	Day FR	2018-07-03	Nat Commun	Elucidating the genetic basis of social interaction and isolation.	Loneliness	80,134 European ancestry cases, 364,890 European ancestry controls	NA	9q22.31	WNK2, C9orf129, FAM120AOS, FAM120A, PHF2, MIR4291	rs10992800-G	0.603	7E-11		0.0054	[0.0038-0.007] unit increase	NR [NR] (imputed)	N
1320	chr9	96373817	96373818	rs10992800	29970889	Day FR	2018-07-03	Nat Commun	Elucidating the genetic basis of social interaction and isolation.	Ability to confide in someone	64,505 European ancestry cases, 238,062 European ancestry controls	NA	9q22.31	WNK2, C9orf129, FAM120AOS, FAM120A, PHF2, MIR4291	rs10992800-G	0.603	2E-9		0.0064	[-0.00614-0.01894] unit increase	NR [NR] (imputed)	N
1320	chr9	96383471	96383472	rs10992806	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	9q22.31	Intergenic	rs10992806-C	0.5031	8E-16	(MTAG)	0.0144	[0.011-0.018] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1320	chr9	96383471	96383472	rs10992806	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	9q22.31	Intergenic	rs10992806-C	0.5031	1E-12		0.0138	[0.01-0.018] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1320	chr9	96384523	96384524	rs1806524	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Coronary artery disease in hypertension	816 Korean ancestry cases, 15,488 Korean ancestry controls	NA	9q22.31		rs1806524-T	0.3042	7E-6		0.7685	[0.685-0.8622]	Affymetrix [7975321] (imputed)	N
1320	chr9	96387591	96387592	rs10761244	34054130	Bralten J	2021-05-30	Neuropsychopharmacology	Genetic underpinnings of sociability in the general population.	Sociability score	342,461 European ancestry individuals	NA	9q22.31	PHF2	rs10761244-C	NR	8E-9		0.01235	unit increase	Affymetrix [9327396] (imputed)	N
1320	chr9	96387591	96387592	rs10761244	34054130	Bralten J	2021-05-30	Neuropsychopharmacology	Genetic underpinnings of sociability in the general population.	Loneliness	342,461 European ancestry individuals	NA	9q22.31	PHF2	rs10761244-?	NR	1E-8				Affymetrix [up to 9327396] (imputed)	N
1320	chr9	96392181	96392182	rs10992812	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	9q22.31	PHF2	rs10992812-G	0.628803	2E-8		0.0121355	[0.0079-0.0164] unit decrease	NR [16516521] (imputed)	N
1320	chr9	96392814	96392815	rs7872863	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	9q22.31	NA	rs7872863-C	0.2845	1E-8	(Female)	1.048218	[1.03-1.06]	Affymetrix, Illumina [NR] (imputed)	N
1320	chr9	96396217	96396218	rs59597511	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	9q22.31	NR	rs59597511-?	NR	9E-9				Affymetrix [~ 8270000] (imputed)	N
1320	chr9	96397688	96397689	rs7044244	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling lonely	376,352 European ancestry individuals	NA	9q22.31	FAM120AOS	rs7044244-A	0.378475	2E-10		6.37	z score decrease	NR [10847151] (imputed)	N
1320	chr9	96403366	96403367	rs10761247	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	9q22.31	NA	rs10761247-A	0.587	5E-11		0.0113	[0.008-0.0146] unit decrease	NR [~ 27400000] (imputed)	N
1320	chr9	96407982	96407983	rs9695734	33045005	Vogelezang S	2020-10-12	PLoS Genet	Novel loci for childhood body mass index and shared heritability with adult cardiometabolic traits.	Childhood body mass index	39,620 European ancestry individuals	NA	9q22.31	PHF2	rs9695734-C	0.84	1E-6		0.052	[0.03-0.074] unit increase	Affymetrix, Illumina [8227808] (imputed)	N
1320	chr9	96413593	96413594	rs72747427	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	9q22.31	NR	rs72747427-T	NR	4E-12		0.0261	[0.019-0.034] unit increase	Affymetrix [9000000] (imputed)	N
1320	chr9	96420389	96420390	rs3763605	33692830	Indencleef K	2021-02-22	Front Genet	The Intersection of the Genetic Architectures of Orofacial Clefts and Normal Facial Variation.	Facial morphology traits (59 NSCL/P endophenotypic segments)	8,246 European ancestry individuals	NA	9q22.31	NR	rs3763605-?	NR	4E-8	(Quadrant I (Philtrum), Segment 16)	0.031986132	NR unit increase	NR [7417619] (imputed)	N
1320	chr9	96421545	96421546	rs10761251	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	9q22.31	Intergenic	rs10761251-A	0.6583	7E-19	(MTAG)	0.0154	[0.012-0.019] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1320	chr9	96421545	96421546	rs10761251	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	9q22.31	Intergenic	rs10761251-T	0.3417	3E-11		0.0159	[0.011-0.021] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1320	chr9	96421545	96421546	rs10761251	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	9q22.31		rs10761251-A	0.6633	3E-14		0.0113	[0.0084-0.0142] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1320	chr9	96421545	96421546	rs10761251	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	9q22.31	Intergenic	rs10761251-A	0.6633	2E-18	(MTAG)	0.0121	[0.0094-0.0148] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1320	chr9	96430746	96430747	rs2398861	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	9q22.31		rs2398861-?	NR	1E-14				NR [~ 8900000] (imputed)	N
1320	chr9	96433395	96433396	rs10821196	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		9q22.31	PHF2	rs10821196-G	0.317602	5E-13		0.0107393	[0.0078-0.0136] unit increase	Affymetrix [12370749]	N
1320	chr9	96436924	96436925	rs10992853	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	9q22.31	PHF2	rs10992853-T	NR	2E-8		0.016856678	[0.011-0.023] unit decrease	Affymetrix [NR]	N
1320	chr9	96443909	96443910	rs7040340	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	9q22.31		rs7040340-A	0.3915	1E-11	(conditional-joint)	0.0098	[0.0071-0.0125] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1320	chr9	96445593	96445594	rs4743930	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	9q22.31	NR	rs4743930-T	0.2505	3E-9		0.017068336	[0.011-0.023] unit increase	Affymetrix [10549349] (imputed)	N
1320	chr9	96445593	96445594	rs4743930	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	9q22.31	PHF2	rs4743930-C	0.747683	5E-31		0.0253988	[0.021-0.03] unit decrease	NR [13737936] (imputed)	N
1320	chr9	96445593	96445594	rs4743930	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	9q22.31		rs4743930-?	NR	1E-40				NR [~ 8900000] (imputed)	N
1320	chr9	96445802	96445803	rs10992863	33479058	Srinivasan S	2021-01-21	Diabetes	The First Genome-Wide Association Study for Type 2 Diabetes in Youth: The Progress in Diabetes Genetics in Youth (ProDiGY) Consortium.	Childhood onset type 2 diabetes	664 European ancestry youth cases, 1,068 African American youth cases, 1,274 Hispanic youth cases, 1,434 European ancestry adult controls, 1,068 African American adult controls, 3,559 Hispanic adult controls	NA	9q22.31	PHF2	rs10992863-G		3E-8		1.23	[NR]	Illumina [10000000] (imputed)	N
1320	chr9	96446444	96446445	rs12553508	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 3)	4,680 European ancestry individuals	3,566 European ancestry individuals	9q22.31		rs12553508-T	0.277221254	6E-9				Illumina [7417619] (imputed)	N
1320	chr9	96446694	96446695	rs10761256	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	9q22.31	Intergenic	rs10761256-G	NR	2E-6		0.0181507	[0.011-0.026] unit decrease	Illumina [13519193] (imputed)	N
1320	chr9	96448300	96448300	rs398011514	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	9q22.31		rs398011514-TG	NR	1E-15		0.0163	[0.012-0.02] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1320	chr9	96451783	96451784	rs4287000	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	9q22.31	Intergenic	rs4287000-G	NR	3E-6	(women)	0.0210734	[0.012-0.03] unit decrease	Illumina [13520550] (imputed)	N
1320	chr9	96461012	96461013	rs10992867	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	9q22.31		rs10992867-?	NR	2E-35		0.0284212	[0.024-0.033] unit decrease	Affymetrix [20259828] (imputed)	N
1320	chr9	96461012	96461013	rs10992867	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	9q22.31	PHF2	rs10992867-G	0.745392	3E-10	(women)	0.0322475	[0.022-0.043] unit decrease	NR [17166351] (imputed)	N
1320	chr9	96461012	96461013	rs10992867	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	9q22.31	PHF2	rs10992867-G	0.745283	3E-17		0.0311923	[0.024-0.039] unit decrease	NR [17166351] (imputed)	N
1320	chr9	96461012	96461013	rs10992867	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	9q22.31	PHF2	rs10992867-G	0.745158	4E-8	(men)	0.0311791	[0.02-0.043] unit decrease	NR [17166351] (imputed)	N
1320	chr9	96463093	96463094	rs12683791	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	9q22.31		rs12683791-?	NR	3E-36		0.0280191	[0.023-0.033] unit decrease	Affymetrix [20259828] (imputed)	N
1321	chr9	96471619	96471620	rs2001205	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Unilateral cleft lip and palate	205 Asian ancestry cases, 315 European ancestry cases, 692 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	9q22.31	NR	rs2001205-?	NR	4E-6		2.13	[1.94-2.33]	Illumina [539000] (imputed)	N
1321	chr9	96493969	96493970	rs7049001	29953918	Deng C	2018-06-25	Gene	Identification of three novel loci of ALDH2 Gene for Serum Folate levels in a Male Chinese Population by Genome-Wide Association Study.	Serum folate levels	1,999 Han Chinese ancestry individuals	NA	9q22.31	BARX1	rs7049001-?	NR	5E-6				Illumina [1940243] (imputed)	N
1321	chr9	96562562	96562563	rs7027203	23725790	Renteria ME	2013-06-03	Twin Res Hum Genet	GWAS of DNA methylation variation within imprinting control regions suggests parent-of-origin association.	DNA methylation (variation)	256 European ancestry individuals	384 European ancestry individuals	9q22.31	intergenic	rs7027203-C	0.35	6E-6	(KvDMR)			Illumina [515966]	N
1321	chr9	96582775	96582776	rs117440602	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	9q22.31	NR	rs117440602-?	NR	1E-11				Affymetrix [~ 8270000] (imputed)	N
1321	chr9	96585114	96585115	rs117843963	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	9q22.31		rs117843963-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1322	chr9	96622041	96622042	rs76017475	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9q22.31		rs76017475-?	NR	3E-10				NR [~ 8900000] (imputed)	N
1322	chr9	96623820	96623821	rs4744295	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	9q22.31	MIR4291	rs4744295-A	0.58259	2E-13		0.0142481	[0.01-0.018] unit decrease	NR [13737936] (imputed)	N
1322	chr9	96623820	96623821	rs4744295	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	9q22.31		rs4744295-?	NR	2E-22		0.0194331	[0.015-0.024] unit decrease	Affymetrix [20259828] (imputed)	N
1322	chr9	96673217	96673218	rs76958245	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	9q22.32	NR	rs76958245-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
1322	chr9	96711337	96711337	rs143581991	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA			rs143581991-?	NR	7E-27		0.021682	[0.017-0.026] unit decrease	Affymetrix [20259828] (imputed)	N
1322	chr9	96711337	96711337	rs143581991	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA		BARX1	rs143581991-A	0.615771	9E-6	(men)	0.0227401	[0.012-0.033] unit decrease	NR [17166351] (imputed)	N
1322	chr9	96711337	96711337	rs143581991	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA		BARX1	rs143581991-A	0.615459	2E-12		0.0229474	[0.016-0.03] unit decrease	NR [17166351] (imputed)	N
1322	chr9	96711337	96711337	rs143581991	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA		BARX1	rs143581991-A	0.615187	1E-7	(women)	0.0238021	[0.014-0.033] unit decrease	NR [17166351] (imputed)	N
1322	chr9	96712311	96712312	rs56285369	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	9q22.32	BARX1	rs56285369-T	NR	5E-10		0.0216369	[0.015-0.028] unit increase	Affymetrix [323858] (imputed)	N
1322	chr9	96712311	96712312	rs56285369	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	9q22.32	BARX1	rs56285369-T	NR	1E-8		0.0189682	[0.012-0.025] unit increase	Affymetrix [323123] (imputed)	N
1322	chr9	96712311	96712312	rs56285369	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	9q22.32	NR	rs56285369-?	NR	8E-12				Affymetrix [~ 8270000] (imputed)	N
1322	chr9	96712311	96712312	rs56285369	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	9q22.32		rs56285369-?	NR	4E-11				NR [~ 8900000] (imputed)	N
1322	chr9	96712770	96712771	rs1933683	30281099	Fadista J	2018-10-02	Hum Mol Genet	Genome-wide meta-analysis identifies BARX1 and EML4-MTA3 as new loci associated with infantile hypertrophic pyloric stenosis.	Infantile hypertrophic pyloric stenosis	1,395 Danish ancestry cases, 4,438 Danish ancestry controls	1,794 European ancestry cases, 633 Hispanic ancestry cases, 1,875 European ancestry controls, 633 Hispanic ancestry controls	9q22.32	NR	rs1933683-G	0.1044	9E-11		1.34	[1.25-1.43]	Illumina [6576307] (imputed)	N
1322	chr9	96712770	96712771	rs1933683	30281099	Fadista J	2018-10-02	Hum Mol Genet	Genome-wide meta-analysis identifies BARX1 and EML4-MTA3 as new loci associated with infantile hypertrophic pyloric stenosis.	Infantile hypertrophic pyloric stenosis	1,395 Danish ancestry cases, 4,438 Danish ancestry controls	1,794 European ancestry cases, 633 Hispanic ancestry cases, 1,875 European ancestry controls, 633 Hispanic ancestry controls	9q22.32	NR	rs1933683-G	0.10230698571428573	3E-9	(EA)	1.34	[1.24-1.43]	Illumina [6576307] (imputed)	N
1322	chr9	96716027	96716028	rs11789015	24121790	Levine DM	2013-10-13	Nat Genet	A genome-wide association study identifies new susceptibility loci for esophageal adenocarcinoma and Barrett's esophagus.	Esophageal adenocarcinoma	1,516 European ancestry cases, 3,209 European ancestry controls	874 European ancestry cases, 6,911 European ancestry controls	9q22.32	BARX1	rs11789015-A	0.717	2E-7		1.2346	[1.14-1.33]	Illumina [922031]	N
1322	chr9	96716027	96716028	rs11789015	24121790	Levine DM	2013-10-13	Nat Genet	A genome-wide association study identifies new susceptibility loci for esophageal adenocarcinoma and Barrett's esophagus.	Digestive system disease (Barrett's esophagus and esophageal adenocarcinoma combined)	3,928 European ancestry cases, 3,207 European ancestry controls	1,636 European ancestry cases, 6,911 European ancestry controls	9q22.32	BARX1	rs11789015-A	0.717	1E-9		1.2048	[1.14-1.27]	Illumina [922031]	N
1322	chr9	96716027	96716028	rs11789015	24121790	Levine DM	2013-10-13	Nat Genet	A genome-wide association study identifies new susceptibility loci for esophageal adenocarcinoma and Barrett's esophagus.	Barrett's esophagus	2,416 European ancestry cases, 3,206 European ancestry controls	759 European ancestry cases, 6,911 European ancestry controls	9q22.32	BARX1	rs11789015-A	0.717	5E-6		1.1765	[1.1-1.27]	Illumina [922031]	N
1322	chr9	96720777	96720778	rs13291289	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	9q22.32	BARX1-AS1	rs13291289-C	0.602983	1E-32		0.0226528	[0.019-0.026] unit decrease	NR [13737936] (imputed)	N
1322	chr9	96720777	96720778	rs13291289	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	9q22.32		rs13291289-?	NR	2E-26				NR [~ 8900000] (imputed)	N
1322	chr9	96720777	96720778	rs13291289	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	9q22.32		rs13291289-?	NR	3E-27		0.0212213	[0.017-0.025] unit decrease	Affymetrix [20259828] (imputed)	N
1323	chr9	96758341	96758342	rs2398893	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	9q22.32	NR	rs2398893-A	0.71	3E-14		0.015	[0.011-0.019] unit increase	Affymetrix [2446094] (imputed)	N
1323	chr9	96758341	96758342	rs2398893	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	9q22.32	NR	rs2398893-A	0.71	5E-8				Affymetrix [2446094] (imputed)	N
1323	chr9	96758341	96758342	rs2398893	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	315,284 European ancestry male individuals	NA	9q22.32	NR	rs2398893-A	0.7142	7E-16		0.0153	[0.012-0.019] unit increase	NR [~ 27400000] (imputed)	N
1323	chr9	96758341	96758342	rs2398893	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	9q22.32	NA	rs2398893-A	0.7143	9E-17		0.0157	[0.012-0.019] unit increase	NR [~ 27400000] (imputed)	N
1323	chr9	96758341	96758342	rs2398893	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	9q22.32	PTPDC1	rs2398893-A	0.7157	1E-6	(EA)	0.018	[0.011-0.025] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1323	chr9	96758341	96758342	rs2398893	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	9q22.32	PTPDC1	rs2398893-A	0.7125	5E-7		0.0181	[0.011-0.025] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1323	chr9	96758341	96758342	rs2398893	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-hip ratio	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	9q22.32	PTPDC1	rs2398893-A	0.71	4E-8		0.02	unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1323	chr9	96760383	96760384	rs10993017	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	316,772 European ancestry male individuals	NA	9q22.32	NR	rs10993017-T	0.7174	7E-15		0.0154	[0.011-0.019] unit increase	NR [~ 27400000] (imputed)	N
1323	chr9	96830705	96830706	rs113824873	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	9q22.32	PTPDC1	rs113824873-G	0.994298	6E-10		0.0699826	[0.048-0.092] unit increase	NR [13737936] (imputed)	N
1323	chr9	96858410	96858411	rs6479527	24121790	Levine DM	2013-10-13	Nat Genet	A genome-wide association study identifies new susceptibility loci for esophageal adenocarcinoma and Barrett's esophagus.	Esophageal adenocarcinoma	1,516 European ancestry cases, 3,209 European ancestry controls	874 European ancestry cases, 6,911 European ancestry controls	9q22.32	PTPDC1	rs6479527-C	0.511	2E-6		1.1765	[1.1-1.27]	Illumina [922031]	N
1324	chr9	96889504	96889505	rs3909256	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	9q22.32	NR	rs3909256-T	0.7541	6E-14		0.0159	[0.012-0.02] unit increase	NR [~ 27400000] (imputed)	N
1324	chr9	96893944	96893945	rs1257763	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	9q22.32	PTPDC1	rs1257763-A	0.04	1E-9		0.069	[NR] unit increase	Affymetrix, Illumina [2834208] (imputed)	N
1324	chr9	96894252	96894253	rs56117851	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	9q22.32	PTPDC1	rs56117851-T	NR	2E-10		0.0253277	[0.018-0.033] unit increase	Affymetrix [323858] (imputed)	N
1324	chr9	96894252	96894253	rs56117851	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	9q22.32	PTPDC1	rs56117851-T	NR	2E-10		0.0242665	[0.017-0.032] unit increase	Affymetrix [323123] (imputed)	N
1324	chr9	96900504	96900505	rs7854962	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	9q22.32	PTPDC1	rs7854962-C	0.784881	1E-11		0.021679	[0.015-0.028] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1324	chr9	96903468	96903469	rs7866254	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	9q22.32	PTPDC1	rs7866254-G	0.786463	1E-13		0.0169292	[0.012-0.021] unit decrease	NR [13737936] (imputed)	N
1324	chr9	96903468	96903469	rs7866254	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	9q22.32		rs7866254-?	NR	2E-21		0.0229981	[0.018-0.028] unit decrease	Affymetrix [20259828] (imputed)	N
1324	chr9	96905903	96905904	rs10761318	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	9q22.32		rs10761318-?	NR	4E-23				NR [~ 8900000] (imputed)	N
1324	chr9	96915001	96915002	rs10993072	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	9q22.32	NR	rs10993072-C	0.6647	3E-14		0.0315	[0.023-0.04] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1324	chr9	96915246	96915247	rs112669216	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	9q22.32	NR	rs112669216-?	NR	2E-13				Affymetrix [~ 8270000] (imputed)	N
1324	chr9	96915948	96915948	rs35605434	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	9q22.32		rs35605434-AC	NR	1E-8		0.0117	[0.0076-0.0158] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
1324	chr9	96918491	96918491	rs140272366	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	9q22.32	NR	rs140272366-CT	NR	1E-9		0.0147	[0.01-0.0194] unit decrease	Affymetrix [9000000] (imputed)	N
1324	chr9	96919181	96919182	rs10114341	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	9q22.32	LOC107987099, PTPDC1	rs10114341-C	0.440754140705696	1E-8		0.0409	[0.027-0.055] unit decrease	NR [5035015] (imputed)	N
1324	chr9	96943058	96943059	rs10821311	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	9q22.32	NR	rs10821311-G	0.681	4E-13		0.0358	[0.026-0.045] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
1324	chr9	96951082	96951083	rs7025880	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	9q22.32		rs7025880-?	NR	3E-10				NR [~ 8900000] (imputed)	N
1324	chr9	96956562	96956563	rs113346517	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9q22.32		rs113346517-?	NR	1E-59				NR [~ 8900000] (imputed)	N
1325	chr9	96997026	96997027	rs113269935	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	9q22.32	NR	rs113269935-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
1325	chr9	97001681	97001682	rs55653563	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	9q22.32	ZNF169	rs55653563-A	0.7321	2E-9		1.04	[1.03-1.06]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1325	chr9	97009023	97009024	rs9409710	31681408	Yang XL	2019-10-11	Front Genet	Three Novel Loci for Infant Head Circumference Identified by a Joint Association Analysis.	Birth weight (MTAG)	up to 182,902 European ancestry individuals	NA	9q22.32	NR	rs9409710-A	0.7	7E-9		0.023558382	[0.016-0.032] unit increase	NR [1977400] (imputed)	N
1325	chr9	97009023	97009024	rs9409710	31681408	Yang XL	2019-10-11	Front Genet	Three Novel Loci for Infant Head Circumference Identified by a Joint Association Analysis.	Birth length (MTAG)	up to 182,902 European ancestry individuals	NA	9q22.32	NR	rs9409710-A	0.659	2E-8		0.03473215	[0.023-0.047] unit increase	NR [1977400] (imputed)	N
1325	chr9	97016557	97016558	rs9299416	29682794	Szekely E	2018-04-22	Genet Epidemiol	Genetic associations with childhood brain growth, defined in two longitudinal cohorts.	Cerebellum growth	581 European ancestry individuals, 31 African American individuals, 8 Asian American individuals, 15 admixed individuals, 80 other ancestries individuals	NA	9q22.32	MIRLET7DHG, ZNF169	rs9299416-?	NR	1E-6				Illumina [at least 653030]	N
1325	chr9	97034214	97034214	rs35485933	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	9q22.32	ZNF169	rs35485933-TAA	0.555537	3E-13		0.016377239	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1325	chr9	97050946	97050947	rs3118754	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	9q22.32	ZNF169	rs3118754-C	0.391363	4E-29		0.02579649	[0.021-0.03] unit increase	Affymetrix [93095623] (imputed)	N
1325	chr9	97062980	97062981	rs12236219	29273807	Turcot V	2017-12-22	Nat Genet	Protein-altering variants associated with body mass index implicate pathways that control energy intake and expenditure in obesity.	Body mass index	up to 449,889 European ancestry individuals	up to 192,226 European ancestry individuals	9q22.32	ZNF169	rs12236219-T	0.0423	9E-10		0.029	[0.019-0.039] unit decrease	Illumina [246328]	N
1325	chr9	97062980	97062981	rs12236219	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	9q22.32	ZNF169	rs12236219-T	0.06	3E-9		0.021	[0.013-0.029] unit decrease	Illumina [6108953] (imputed)	N
1325	chr9	97068925	97068926	rs10993160	22344221	Okada Y	2012-02-19	Nat Genet	Common variants at CDKAL1 and KLF9 are associated with body mass index in east Asian populations.	Body mass index (SNP x SNP interaction)	26,620 Japanese ancestry individuals	35,625 East Asian ancestry individuals	9q22.32	ZNF169	rs10993160-A	0.83	6E-7		0.053	[0.031-0.075] unit increase	Illumina [2178018] (imputed)	N
1325	chr9	97072646	97072647	rs2479587	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	9q22.32	NR	rs2479587-C	0.07	2E-6	(EA)	7.07	[6.13-8.01]	Illumina [905956]	N
1325	chr9	97073587	97073588	rs3932549	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	9q22.32	ZNF169, NUTM2F	rs3932549-C	0.687	2E-9	(Japanese)	0.025	[0.017-0.033] unit increase	Illumina [6108953] (imputed)	N
1325	chr9	97086466	97086467	rs10821339	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	9q22.32		rs10821339-?	NR	5E-18				NR [~ 8900000] (imputed)	N
1325	chr9	97102353	97102354	rs60981486	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	163,835 East Asian ancestry individuals	NA	9q22.32		rs60981486-A	0.300908	7E-9		0.0205354	[0.014-0.027] unit decrease	Illumina [13479178] (imputed)	N
1325	chr9	97103410	97103411	rs7022219	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	9q22.32		rs7022219-G	0.613987	8E-12		0.0207893	[0.015-0.027] unit increase	Illumina [13479924] (imputed)	N
1325	chr9	97116350	97116351	rs28794650	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	9q22.32		rs28794650-A	NR	3E-13		0.0171	[0.013-0.022] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
1326	chr9	97132745	97132746	rs149288838	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9q22.32		rs149288838-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1326	chr9	97249229	97249230	rs7047279	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	9q22.32		rs7047279-C	NR	1E-8		0.0115	[0.0076-0.0154] unit increase	Affymetrix, Illumina [20535842] (imputed)	N
1326	chr9	97249229	97249230	rs7047279	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q22.32	NR	rs7047279-T	0.426121	1E-22				Affymetrix, Illumina [22063850] (imputed)	N
1326	chr9	97249229	97249230	rs7047279	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	9q22.32	NR	rs7047279-T	0.428751	4E-25		0.019793	[0.016-0.024] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
1326	chr9	97251033	97251034	rs9409565	27723779	Gong J	2016-10-10	PLoS Genet	Genome-Wide Interaction Analyses between Genetic Variants and Alcohol Consumption and Smoking for Risk of Colorectal Cancer.	Colorectal cancer (alcohol consumption interaction)	8,058 European ancestry non/occasional, light-to-moderate, and heavy drinker cases, 8,765 European ancestry non/occasional, light-to-moderate, and heavy drinker controls	NA	9q22.32	HIATL1, FBP2	rs9409565-C	NR	2E-8	(Light-to-moderate drinkers)	1.35	[1.21-1.49]	Affymetrix, Illumina [~ 2700000] (imputed)	N
1326	chr9	97251033	97251034	rs9409565	27723779	Gong J	2016-10-10	PLoS Genet	Genome-Wide Interaction Analyses between Genetic Variants and Alcohol Consumption and Smoking for Risk of Colorectal Cancer.	Colorectal cancer (alcohol consumption interaction)	8,058 European ancestry non/occasional, light-to-moderate, and heavy drinker cases, 8,765 European ancestry non/occasional, light-to-moderate, and heavy drinker controls	NA	9q22.32	HIATL1, FBP2	rs9409565-C	NR	1E-7	(light/moderate and heavy drinkers)	1.23	[1.04-1.45]	Affymetrix, Illumina [~ 2700000] (imputed)	N
1327	chr9	97261571	97261572	rs9409787	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	9q22.32	NUTM2F, DHS	rs9409787-G	0.13	7E-8	(EA)	4.93	[4.28-5.58]	Illumina [905956]	N
1327	chr9	97269182	97269183	rs35219595	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	9q22.32	RP11-533K9.3	rs35219595-T	0.614547	3E-19		0.02072864	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1327	chr9	97269182	97269183	rs35219595	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	9q22.32	RP11-533K9.3	rs35219595-T	0.6134	5E-12		0.02550188	[0.018-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1327	chr9	97269617	97269618	rs56062389	34748635	Miranda JP	2021-11-08	J Clin Endocrinol Metab	Genome-Wide Association Study And Polygenic Risk Scores Of Serum Dheas Levels In A Chilean Children Cohort.	DHEAS levels	398 Hispanic or Latin American male individuals	NA	9q22.32	LOC107987100	rs56062389-G	0.35	4E-6		0.09	unit increase	Illumina [5510858] (imputed)	N
1327	chr9	97271154	97271155	rs9409793	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	9q22.32	NR	rs9409793-G	NR	3E-8		0.0220857	[0.014-0.03] unit decrease	Affymetrix [16832071] (imputed)	N
1327	chr9	97314740	97314741	rs16910061	19893584	Kim JJ	2009-11-06	J Hum Genet	Identification of 15 loci influencing height in a Korean population.	Height	8,842 Korean ancestry individuals	NA	9q22.32	FBP2	rs16910061-T	0.14	3E-6		0.53	[NR] cm decrease	Affymetrix [334546]	N
1327	chr9	97328312	97328313	rs10761339	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Caudal middle frontal gyrus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	9q22.32	LOC101928099, FBP2	rs10761339-?		1E-6				Illumina [4322238] (imputed)	N
1327	chr9	97347548	97347549	rs616451	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9q22.32		rs616451-?	NR	3E-16				NR [~ 8900000] (imputed)	N
1327	chr9	97349519	97349520	rs2280302	28641921	Li J	2017-05-15	Neurobiol Aging	Genome-wide association and interaction studies of CSF T-tau/A?42 ratio in ADNI cohort.	Cerebrospinal fluid t-tau:AB1-42 ratio	113 European ancestry Alzheimer's disease cases, 207 European ancestry individuals with late mild cognitive impairment, 239 European ancestry individuals with early mild cognitive impairment, 85 European ancestry individuals with significant memory concern, 199 European ancestry controls.	NA	9q22.32	FBP1	rs2280302-?		1E-8				Illumina [563980]	N
1327	chr9	97349590	97349591	rs2280301	28641921	Li J	2017-05-15	Neurobiol Aging	Genome-wide association and interaction studies of CSF T-tau/A?42 ratio in ADNI cohort.	Cerebrospinal fluid t-tau:AB1-42 ratio	113 European ancestry Alzheimer's disease cases, 207 European ancestry individuals with late mild cognitive impairment, 239 European ancestry individuals with early mild cognitive impairment, 85 European ancestry individuals with significant memory concern, 199 European ancestry controls.	NA	9q22.32	FBP1	rs2280301-?		1E-8				Illumina [563980]	N
1327	chr9	97358140	97358141	rs117926975	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	9q22.32	NR	rs117926975-?	NR	2E-6	(Native Hawaiian)	1.202	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1327	chr9	97369148	97369149	rs1769259	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9q22.32	NR	rs1769259-C	0.04181	1E-13	(FBP2)	0.1473	NR unit decrease	Illumina [1671387] (imputed)	N
1328	chr9	97402556	97402557	rs7044650	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	9q22.32		rs7044650-A	0.04	3E-9		5.92	z score increase	Affymetrix [9061022] (imputed)	N
1328	chr9	97415060	97415061	rs116996231	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	9q22.32	NR	rs116996231-T	NR	4E-12		0.0311	[0.022-0.04] unit decrease	Affymetrix [9000000] (imputed)	N
1328	chr9	97444037	97444038	rs10125337	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	9q22.32	FBP1, C9orf3	rs10125337-G	0.0040	4E-6	(CRP )	0.03	[NR] ng/mL increase	Illumina [899892]	N
1328	chr9	97475395	97475396	rs4744369	32060260	Campos AI	2020-02-14	Nat Commun	Insights into the aetiology of snoring from observational and genetic investigations in the UK Biobank.	Snoring	61,792 British ancestry female cases, 156,554 British ancestry female controls	NA	9q22.32	NR	rs4744369-T	NR	6E-6		0.00629	[0.0036-0.009] unit decrease	NR [11010159] (imputed)	N
1328	chr9	97475395	97475396	rs4744369	32060260	Campos AI	2020-02-14	Nat Commun	Insights into the aetiology of snoring from observational and genetic investigations in the UK Biobank.	Snoring	152,302 British ancestry cases, 256,015 British ancestry controls	NA	9q22.32	NR	rs4744369-T	NR	4E-8		0.00582525	[0.0037-0.0079] unit decrease	NR [11010159] (imputed)	N
1328	chr9	97475395	97475396	rs4744369	32060260	Campos AI	2020-02-14	Nat Commun	Insights into the aetiology of snoring from observational and genetic investigations in the UK Biobank.	Snoring	151,836 British ancestry cases, 255,230 British ancestry controls	NA	9q22.32	NR	rs4744369-T	NR	5E-8	(adjusted for BMI)	0.00574	[0.0037-0.0078] unit decrease	NR [11010159] (imputed)	N
1328	chr9	97476483	97476484	rs1016013	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Snoring	359,916 European ancestry individuals	NA	9q22.32	NR	rs1016013-G	0.5964	7E-10		1.0309278	[1.02-1.04]	Affymetrix, Illumina [10862568] (imputed)	N
1328	chr9	97477792	97477793	rs4744370	34338756	Ahlberg G	2021-07-29	Eur Heart J	Genome-wide association study identifies 18 novel loci associated with left atrial volume and function.	Left atrial total emptying fraction	35,658 British ancestry individuals	NA	9q22.32		rs4744370-?	NR	8E-9		0.339	[0.22-0.45] unit decrease	Affymetrix [10600000] (imputed)	N
1328	chr9	97483157	97483158	rs112541862	26621817	Cheng TH	2015-12-01	Sci Rep	Meta-analysis of genome-wide association studies identifies common susceptibility polymorphisms for colorectal and endometrial cancer near SH2B3 and TSHZ1.	Colorectal or endometrial cancer	5,725 European ancestry colorectal carcinoma cases, 2,212 European ancestry endometrial carcinoma cases, 13,396 European ancestry controls	NA	9q22.32	FBP1	rs112541862-A	0.962	4E-6	(opposite direction)	1.3	[1.16-1.45]	Illumina [up to 6000000] (imputed)	N
1328	chr9	97492519	97492520	rs7026071	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	9q22.32	C9orf3	rs7026071-T	0.41	2E-35	(EA)	1.1	[1.08-1.12]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1328	chr9	97492519	97492520	rs7026071	28416818	Christophersen IE	2017-04-17	Nat Genet	Large-scale analyses of common and rare variants identify 12 new loci associated with atrial fibrillation.	Atrial fibrillation	15,979 European ancestry cases, 102,776 European ancestry controls.	NA	9q22.32	C9orf3	rs7026071-T	0.41	3E-11		1.09	[1.07-1.12]	Affymetrix, Illumina [11795432] (imputed)	N
1328	chr9	97492519	97492520	rs7026071	28416818	Christophersen IE	2017-04-17	Nat Genet	Large-scale analyses of common and rare variants identify 12 new loci associated with atrial fibrillation.	Atrial fibrillation	15,979 European ancestry cases, 102,776 European ancestry controls, 641 African American cases, 5,234 African American controls, 837 Japanese ancestry cases, 3,293 Japanese controls, 277 Hispanic cases, 3,081 Hispanic controls,197 Brazilian ancestry cases, 758 Brazilian ancestry controls.	3,666 cases, 139,852 controls	9q22.32	C9orf3	rs7026071-T	0.4	2E-6		1.13	[1.07-1.19]	Affymetrix, Illumina [11795432] (imputed)	N
1328	chr9	97497493	97497494	rs12236906	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	9q22.32	ZNF169	rs12236906-T	0.9872	3E-6		1.15	[1.08-1.22]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1328	chr9	97503984	97503985	rs7851726	26631737	Teumer A	2015-12-02	Diabetes	Genome-wide Association Studies Identify Genetic Loci Associated With Albuminuria in Diabetes.	Urinary albumin-to-creatinine ratio	up to 54,450 European ancestry individuals	NA	9q22.32	C9orf3, MIR2278	rs7851726-T	0.42	5E-6		0.027	[0.015-0.039] unit increase	Affymetrix, Illumina [2191945] (imputed)	N
1329	chr9	97523153	97523154	rs12337706	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	9q22.32		rs12337706-G	NR	2E-34		0.0514	[0.043-0.06] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
1329	chr9	97523153	97523154	rs12337706	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	9q22.32	NR	rs12337706-G	0.06085	8E-29		0.005103	[0.0042-0.006] unit decrease	Affymetrix [NR] (imputed)	N
1329	chr9	97574119	97574120	rs2767403	34680877	Lybech LKM	2021-09-23	Genes (Basel)	Suicide Related Phenotypes in a Bipolar Sample: Genetic Underpinnings.	Suicide related phenotype (feeling that the life was not worth living) in bipolar disorder	25 Asian ancestry, Pacific Islander individuals, 53 Black ancestry, African American individuals, 5 Native American, Eskimo, Aleut individuals, 1,060 White ancestry individuals, 31 individuals	NA	9q22.32		rs2767403-?	NR	6E-6				Affymetrix [NR] (imputed)	N
1329	chr9	97617102	97617103	rs10993370	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	9q22.32	C9orf3	rs10993370-C	0.5545	2E-19		0.0172	[0.013-0.021] unit decrease	Affymetrix [18391927] (imputed)	N
1329	chr9	97617102	97617103	rs10993370	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9q22.32		rs10993370-?	NR	3E-51				NR [~ 8900000] (imputed)	N
1329	chr9	97630450	97630451	rs10512236	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	9q22.32	NR	rs10512236-T	NR	6E-13		0.0364	[0.027-0.046] unit decrease	Affymetrix [9000000] (imputed)	N
1329	chr9	97630450	97630451	rs10512236	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	9q22.32	NR	rs10512236-T	NR	4E-29		0.059	[0.049-0.069] unit decrease	Affymetrix [9000000] (imputed)	N
1329	chr9	97636197	97636198	rs6479579	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	9q22.32		rs6479579-?	NR	6E-8				NR [~ 8900000] (imputed)	N
1329	chr9	97636197	97636198	rs6479579	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	9q22.32	NR	rs6479579-T	0.0466483	2E-9		0.0436594	[0.029-0.058] unit increase	NR [19129689] (imputed)	N
1329	chr9	97642881	97642882	rs141301535	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Arrhythmia	17,861 Japanese ancestry cases, 194,592 Japanese ancestry controls	NA	9q22.32		rs141301535-G	0.007623738	2E-30		2.4033685	[2.068678807-2.792207196]	Illumina [8919992] (imputed)	N
1329	chr9	97648586	97648587	rs4385527	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	9q22.32	C9orf3	rs4385527-A	0.39	2E-36		1.1	[1.08-1.11]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1330	chr9	97679770	97679771	rs10993397	26284813	Hayes MG	2015-08-18	Nat Commun	Genome-wide association of polycystic ovary syndrome implicates alterations in gonadotropin secretion in European ancestry populations.	Polycystic ovary syndrome	984 European ancestry cases, 2,964 European ancestry controls	2,021 European ancestry cases, 2,566 European ancestry controls	9q22.32	C9orf3, FANCC	rs10993397-C	0.56	5E-13		1.37	[1.22-1.54]	Illumina [at least 624044] (imputed)	N
1330	chr9	97696678	97696679	rs76385688	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Rubella	12,000 European ancestry cases, 71,597 European ancestry controls	NA	9q22.32	NR	rs76385688-?	NR	7E-6		2.9203	[0.91-4.94] unit decrease	Illumina [at least 560000] (imputed)	N
1330	chr9	97713458	97713459	rs10821415	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	9q22.32	NR	rs10821415-C	0.578972	2E-8		0.014599	[0.009-0.0202] unit increase	Affymetrix [16580851] (imputed)	N
1330	chr9	97713458	97713459	rs10821415	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	9q22.32	C9orf3	rs10821415-A	0.413	3E-34		1.09	[1.07-1.10]	Illumina [34740186] (imputed)	N
1330	chr9	97713458	97713459	rs10821415	22544366	Ellinor PT	2012-04-29	Nat Genet	Meta-analysis identifies six new susceptibility loci for atrial fibrillation.	Atrial fibrillation	6,707 European ancestry cases, 52,426 European ancestry controls	5,381 European ancestry casses, 10,030 European ancestry  controls	9q22.32	C9orf3	rs10821415-A	0.42	4E-11		1.11	[1.08-1.15]	Affymetrix, Illumina [~ 2500000] (imputed)	N
1330	chr9	97718204	97718205	rs146337789	34216518	Osman Y	2021-07-03	Int J Lab Hematol	Functional multigenic variations associated with hodgkin lymphoma.	Hodgkin's lymphoma	56 Greater Middle Eastern ancestry cases,  5 unknown ancestry cases, 36 Greater Middle Eastern ancestry controls	NA	9q22.32	AOPEP	rs146337789-T	0.36	3E-11		0.0352		Illumina [243345]	N
1330	chr9	97723265	97723266	rs7864171	30566500	Day F	2018-12-19	PLoS Genet	Large-scale genome-wide meta-analysis of polycystic ovary syndrome suggests shared genetic architecture for different diagnosis criteria.	Polycystic ovary syndrome	10,074 European ancestry cases, 103,164 European ancestry controls	NA	9q22.32	C9orf3	rs7864171-A	0.43	3E-8		0.0933	[0.06-0.126] unit decrease	Illumina [> 10000000] (imputed)	N
1330	chr9	97724722	97724723	rs563290728	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9q22.32		rs563290728-?	NR	2E-21				NR [~ 8900000] (imputed)	N
1330	chr9	97741273	97741274	rs3802458	20932654	Kerns SL	2010-10-05	Int J Radiat Oncol Biol Phys	Genome-wide association study to identify single nucleotide polymorphisms (SNPs) associated with the development of erectile dysfunction in African-American men after radiotherapy for prostate cancer.	Erectile dysfunction and prostate cancer treatment	27 African American cases, 52 African American controls	NA	9q22.32	C9orf3	rs3802458-?	0.04	4E-6		10.53	[NR]	Affymetrix [512497]	N
1330	chr9	97741335	97741336	rs3802457	22885925	Shi Y	2012-08-12	Nat Genet	Genome-wide association study identifies eight new risk loci for polycystic ovary syndrome.	Polycystic ovary syndrome	2,254 Han Chinese ancestry cases, 3,001 Han Chinese ancestry controls	8,226 Han Chinese ancestry cases, 7,578 Han Chinese ancestry controls	9q22.32	C9orf3	rs3802457-G	0.904	5E-14		1.3	[NR]	Affymetrix [NR] (imputed)	N
1330	chr9	97744171	97744172	rs117482524	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	9q22.32	C9orf3	rs117482524-C	0.018656	1E-9		0.049342446	[0.033-0.065] unit decrease	Affymetrix [93095623] (imputed)	N
1330	chr9	97770604	97770605	rs7862618	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	9q22.32	NR	rs7862618-A	0.0134	5E-6	(EA)	0.1381	[0.079-0.197] unit decrease	Illumina [~ 11800000] (imputed)	N
1331	chr9	97795420	97795421	rs6479591	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	9q22.32	NR	rs6479591-G	0.2053	1E-9		0.0326	[0.022-0.043] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1331	chr9	97804640	97804641	rs7046845	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	9q22.32	NR	rs7046845-C	0.0903	2E-8		0.0465	[0.03-0.063] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
1331	chr9	97831580	97831581	rs4744436	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	9q22.32	C9orf3	rs4744436-G	NR	2E-10		0.0262006	[0.018-0.034] unit decrease	Affymetrix [321016] (imputed)	N
1331	chr9	97847847	97847848	rs137908951	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic heart failure	14,262 European ancestry cases, 471,898 European ancestry controls, 10,540 East Asian ancestry cases, 168,186 East Asian ancestry controls	NA	9q22.32		rs137908951-T	NR	6E-9		0.46	[0.31-0.61] unit increase	Affymetrix, Illumina [25844553] (imputed)	N
1331	chr9	97847847	97847848	rs137908951	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic heart failure	10,540 East Asian ancestry cases, 168,186 East Asian ancestry controls	NA	9q22.32		rs137908951-T	0.011230319	6E-9		0.46000293	[0.31-0.61] unit increase	Illumina [13429980] (imputed)	N
1331	chr9	97891868	97891869	rs149672087	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atrial fibrillation/atrial flutter	4,150 East Asian ancestry cases, 155,540 East Asian ancestry controls	NA	9q22.32		rs149672087-T	0.012961334	3E-15		0.9791886	[0.74-1.22] unit increase	Illumina [13427194] (imputed)	N
1331	chr9	97891868	97891869	rs149672087	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atrial fibrillation/atrial flutter	29,212 European ancestry cases, 400,539 European ancestry controls, 4,150 East Asian ancestry cases, 155,540 East Asian ancestry controls	NA	9q22.32		rs149672087-T	NR	3E-15		0.9792	[0.74-1.22] unit increase	Affymetrix, Illumina [25830072] (imputed)	N
1331	chr9	97894906	97894907	rs144106220	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antithrombotic agents)	67,653 European ancestry cases, 85,986 European ancestry controls, 54,220 East Asian ancestry cases, 124,506 East Asian ancestry controls	NA	9q22.32		rs144106220-A	NR	1E-8		0.2356	[0.15-0.32] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1331	chr9	97894906	97894907	rs144106220	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antithrombotic agents)	54,220 East Asian ancestry cases, 124,506 East Asian ancestry controls	NA	9q22.32		rs144106220-A	0.011401262	1E-8		0.23561308	[0.15-0.32] unit increase	Illumina [13429980] (imputed)	N
1332	chr9	97935645	97935646	rs147765058	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	9q22.32	FANCC	rs147765058-T	0.017222	8E-10		0.05300245	[0.036-0.07] unit decrease	Affymetrix [93095623] (imputed)	N
1332	chr9	97935645	97935646	rs147765058	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	9q22.32	NR	rs147765058-T	0.016146	1E-11		0.050686	[0.036-0.065] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
1332	chr9	97942358	97942359	rs190889494	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9q22.32		rs190889494-?	NR	2E-25				NR [~ 8900000] (imputed)	N
1333	chr9	98082799	98082800	rs148231617	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	9q22.32	NR	rs148231617-?	NR	7E-11				Affymetrix [~ 8270000] (imputed)	N
1333	chr9	98106375	98106376	rs76188060	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9q22.32		rs76188060-?	NR	8E-17				NR [~ 8900000] (imputed)	N
1333	chr9	98127343	98127344	rs10761387	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	9q22.32		rs10761387-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1333	chr9	98128706	98128707	rs76281781	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	9q22.32	RP11-435O5.7	rs76281781-T	NR	3E-10		0.0407874	[0.028-0.053] unit decrease	Affymetrix [323123] (imputed)	N
1333	chr9	98137552	98137552	rs200292470	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	9q22.32	RP11-435O5.7	rs200292470-CA	NR	1E-12		0.0375296	[0.027-0.048] unit increase	Affymetrix [323123] (imputed)	N
1333	chr9	98142656	98142657	rs11789949	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	9q22.32	RP11-435O5.7	rs11789949-A	NR	3E-16		0.0313213	[0.024-0.039] unit decrease	Affymetrix [323123] (imputed)	N
1333	chr9	98143641	98143642	rs357542	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	9q22.32	RP11-435O5.7	rs357542-T	NR	3E-13		0.0229768	[0.017-0.029] unit increase	Affymetrix [323123] (imputed)	N
1333	chr9	98147803	98147804	rs7860361	32198502	Shin J	2020-03-20	Cereb Cortex	Global and Regional Development of the Human Cerebral Cortex: Molecular Architecture and Occupational Aptitudes.	Cortical surface area (visual PC2)	23,784 European ancestry individuals	19,512 European ancestry individuals, 6,234 individuals	9q22.32	RP11-435O5.7	rs7860361-?	NR	1E-8	(EA)	0.0803	[0.053-0.108] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1333	chr9	98164019	98164020	rs72752371	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	9q22.32	RP11-435O5.7	rs72752371-T	NR	2E-9		0.0427625	[0.029-0.057] unit decrease	Affymetrix [321114] (imputed)	N
1333	chr9	98164019	98164020	rs72752371	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	9q22.32	RP11-435O5.7	rs72752371-T	NR	7E-15		0.054814	[0.041-0.069] unit decrease	Affymetrix [323123] (imputed)	N
1333	chr9	98164019	98164020	rs72752371	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	9q22.32	NR	rs72752371-?	NR	5E-12				Affymetrix [~ 8270000] (imputed)	N
1333	chr9	98167581	98167582	rs357528	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	9q22.32	RP11-435O5.7	rs357528-T	NR	8E-11		0.0217515	[0.015-0.028] unit decrease	Affymetrix [323123] (imputed)	N
1334	chr9	98192382	98192383	rs28710957	32198502	Shin J	2020-03-20	Cereb Cortex	Global and Regional Development of the Human Cerebral Cortex: Molecular Architecture and Occupational Aptitudes.	Cortical surface area (visual PC2)	23,784 European ancestry individuals	19,512 European ancestry individuals, 6,234 individuals	9q22.32	RP11-435O5.2	rs28710957-?	NR	2E-8	(EA)	0.0868	[0.057-0.117] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1334	chr9	98198201	98198202	rs568513587	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	9q22.32	PTCH1	rs568513587-C	NR	4E-9		0.0422444	[0.028-0.056] unit increase	Affymetrix [323123] (imputed)	N
1334	chr9	98204602	98204603	rs112191650	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	9q22.32	NR	rs112191650-T	NR	1E-8		5.711	z score decrease	Affymetrix [10847151] (imputed)	N
1334	chr9	98204791	98204792	rs16909859	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical thickness (MOSTest)	26,502 European ancestry individuals	NA	9q22.32	CDC42EP3	rs16909859-?		8E-9				NR [7428630] (imputed)	N
1334	chr9	98205442	98205443	rs357565	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	9q22.32	NR	rs357565-?	NR	3E-16				Affymetrix [~ 8270000] (imputed)	N
1334	chr9	98207301	98207302	rs16909865	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	9q22.32	PTCH1	rs16909865-G	NR	8E-16		0.0465692	[0.035-0.058] unit increase	Affymetrix [323123] (imputed)	N
1334	chr9	98208963	98208964	rs111532669	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Alanine aminotransferase levels in low alcohol consumption	8,716 individuals	NA	9q22.32	NR	rs111532669-?	NR	8E-8		0.1596	[0.1-0.22] unit increase	Illumina [~ 7800000] (imputed)	N
1334	chr9	98209593	98209594	rs357564	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	9q22.32	PTCH1	rs357564-A	NR	8E-10		0.0200404	[0.014-0.026] unit decrease	Affymetrix [321114] (imputed)	N
1334	chr9	98209593	98209594	rs357564	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	9q22.32	PTCH1	rs357564-A	NR	1E-12		0.021096	[0.015-0.027] unit decrease	Affymetrix [321016] (imputed)	N
1334	chr9	98209593	98209594	rs357564	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	9q22.32	PTCH1	rs357564-A	NR	6E-24		0.0326882	[0.026-0.039] unit decrease	Affymetrix [323123] (imputed)	N
1334	chr9	98209593	98209594	rs357564	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	9q22.32	NR	rs357564-?	NR	6E-14				Affymetrix [~ 8270000] (imputed)	N
1334	chr9	98210940	98210941	rs59925771	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	9q22.32	NR	rs59925771-T	0.105184320450945	9E-13		0.013600822	[0.0099-0.0173] unit increase	NR [NR]	N
1334	chr9	98210940	98210941	rs59925771	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	9q22.32	NR	rs59925771-T	0.105184320450945	2E-12		0.014530855	[0.011-0.019] unit increase	NR [NR]	N
1334	chr9	98212607	98212608	rs2282043	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	9q22.32		rs2282043-T	NR	6E-10		0.0205	[0.014-0.027] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
1334	chr9	98212607	98212608	rs2282043	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	9q22.32	PTCH1	rs2282043-C	0.91	2E-8		5.6	z-score increase	Affymetrix [4312306] (imputed)	N
1334	chr9	98213727	98213728	rs9632916	32198502	Shin J	2020-03-20	Cereb Cortex	Global and Regional Development of the Human Cerebral Cortex: Molecular Architecture and Occupational Aptitudes.	Cortical surface area (visual PC2)	23,784 European ancestry individuals	19,512 European ancestry individuals, 6,234 individuals	9q22.32	PTCH1	rs9632916-?	NR	2E-10	(EA)	0.1023	[0.071-0.134] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1334	chr9	98216875	98216876	rs28620532	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	9q22.32	PTCH1	rs28620532-G	NR	3E-19		0.0266621	[0.021-0.032] unit increase	Affymetrix [321016] (imputed)	N
1334	chr9	98216875	98216876	rs28620532	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (min-P)	26,502 European ancestry individuals	NA	9q22.32	KCNK2	rs28620532-?		1E-11				NR [7428630] (imputed)	N
1334	chr9	98216875	98216876	rs28620532	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (min-P)	26,502 European ancestry individuals	NA	9q22.32	NOSTRIN, SPC25	rs28620532-?		4E-11				NR [7428630] (imputed)	N
1334	chr9	98216875	98216876	rs28620532	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	9q22.32	NR	rs28620532-A	NR	2E-8		5.66	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1334	chr9	98217347	98217348	rs28457693	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	9q22.32	PTCH1, FANCC	rs28457693-G	0.106271	4E-9		0.030104	[0.02-0.04] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
1334	chr9	98217347	98217348	rs28457693	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	9q22.32	PTCH1, FANCC	rs28457693-G	0.109229	1E-25		0.044196	[0.036-0.052] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1334	chr9	98217580	98217581	rs28701981	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9q22.32		rs28701981-?	NR	2E-140				NR [~ 8900000] (imputed)	N
1334	chr9	98221860	98221861	rs2236406	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	9q22.32	PTCH1	rs2236406-T	0.6507	1E-87		0.0394	[0.035-0.043] unit decrease	Affymetrix [18391927] (imputed)	N
1334	chr9	98221860	98221861	rs2236406	30796134	Soderholm M	2019-02-22	Neurology	Genome-wide association meta-analysis of functional outcome after ischemic stroke.	3-month functional outcome in ischaemic stroke (modified Rankin score)	3,830 European and unknown ancestry modified Rankin score 0-2 cases, 2,335 European and unknown ancestry modified Rankin score 3-6 cases	NA	9q22.32	PTCH1	rs2236406-C	0.36	3E-6	(adjusted for severity)	1.27	[1.17-1.37]	Affymetrix, Illumina [~ 8500000] (imputed)	N
1334	chr9	98225055	98225056	rs28377268	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Neuroticism	274,107 British ancestry individuals	NA	9q22.32	NR	rs28377268-T	0.1071	2E-9		0.01142	[0.0077-0.0152] unit increase	NR [8968716] (imputed)	N
1334	chr9	98225055	98225056	rs28377268	26733130	Styrkarsdottir U	2016-01-06	Nat Commun	Sequence variants in the PTCH1 gene associate with spine bone mineral density and osteoporotic fractures.	Bone mineral density (spine)	up to 20,132 European ancestry individuals	10,092 European and East Asian ancestry individuals	9q22.32	PTCH1	rs28377268-T	0.1571	1E-11		0.088	(0.112-0.062) unit decrease	Illumina [19689642] (imputed)	N
1334	chr9	98225055	98225056	rs28377268	26733130	Styrkarsdottir U	2016-01-06	Nat Commun	Sequence variants in the PTCH1 gene associate with spine bone mineral density and osteoporotic fractures.	Bone mineral density (hip)	up to 20,162 European ancestry individuals	10,037 European and East Asian ancestry individuals	9q22.32	PTCH1	rs28377268-T	0.1571	2E-6		0.06	(0.08-0.04) unit decrease	Illumina [19689642] (imputed)	N
1334	chr9	98231007	98231008	rs16909898	23284291	Hancock DB	2012-12-20	PLoS Genet	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (smoking interaction)	50,047 European ancestry individuals	NA	9q22.32	PTCH1	rs16909898-?	NR	8E-12	(FEV1/FVC, Ever-smoking)			NR [~ 2500000] (imputed)	N
1334	chr9	98231007	98231008	rs16909898	20010835	Hancock DB	2009-12-13	Nat Genet	Meta-analyses of genome-wide association studies identify multiple loci associated with pulmonary function.	Pulmonary function	20,890 European ancestry individuals	16,178 European ancestry individuals	9q22.32	PTCH1	rs16909898-A	0.90	5E-7	(FEV1/FVC)	0.5	[NR] % increase	Affymetrix, Illumina [2534500] (imputed)	N
1334	chr9	98234902	98234903	rs62558340	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	9q22.32		rs62558340-?	NR	7E-33		0.0283728	[0.024-0.033] unit increase	Affymetrix [20259828] (imputed)	N
1334	chr9	98234902	98234903	rs62558340	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	9q22.32	PTCH1	rs62558340-C	0.76182	8E-7	(men)	0.0265823	[0.015-0.038] unit increase	NR [17166351] (imputed)	N
1334	chr9	98234902	98234903	rs62558340	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	9q22.32	PTCH1	rs62558340-C	0.761005	2E-18		0.0324117	[0.025-0.04] unit increase	NR [17166351] (imputed)	N
1334	chr9	98234902	98234903	rs62558340	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	9q22.32	PTCH1	rs62558340-C	0.760293	1E-12	(women)	0.0382119	[0.028-0.049] unit increase	NR [17166351] (imputed)	N
1334	chr9	98236201	98236202	rs16909902	31681408	Yang XL	2019-10-11	Front Genet	Three Novel Loci for Infant Head Circumference Identified by a Joint Association Analysis.	Birth weight (MTAG)	up to 182,902 European ancestry individuals	NA	9q22.32	NR	rs16909902-A	0.91	3E-17		0.05578424	[0.043-0.069] unit decrease	NR [1977400] (imputed)	N
1334	chr9	98236201	98236202	rs16909902	31681408	Yang XL	2019-10-11	Front Genet	Three Novel Loci for Infant Head Circumference Identified by a Joint Association Analysis.	Birth length (MTAG)	up to 182,902 European ancestry individuals	NA	9q22.32	NR	rs16909902-A	0.892	2E-14		0.07598581	[0.056-0.095] unit decrease	NR [1977400] (imputed)	N
1334	chr9	98236201	98236202	rs16909902	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Sunburns	approximately 344,000 European ancestry individuals	NA	9q22.32		rs16909902-?	NR	1E-7				NR [~ 8900000] (imputed)	N
1334	chr9	98236663	98236664	rs3824488	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	9q22.32	intergenic	rs3824488-T	0.087864	3E-14		7.583	z score increase	Illumina [18485882] (imputed)	N
1334	chr9	98237795	98237796	rs2236407	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	9q22.32	PTCH1	rs2236407-A	0.645484	9E-39		0.0252773	[0.021-0.029] unit increase	NR [13737936] (imputed)	N
1334	chr9	98239189	98239190	rs574688	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	9q22.32	PTCH1	rs574688-C	NR	1E-14		0.0267791	[0.02-0.034] unit decrease	Affymetrix [323123] (imputed)	N
1334	chr9	98243867	98243868	rs80155616	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	9q22.32		rs80155616-?	NR	7E-9				NR [~ 8900000] (imputed)	N
1334	chr9	98245025	98245026	rs28510415	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling worry	372,869 European ancestry individuals	NA	9q22.32	PTCH1	rs28510415-A	0.0916168	3E-8		5.534	unit decrease	NR [10847151] (imputed)	N
1334	chr9	98245025	98245026	rs28510415	27680694	Horikoshi M	2016-10-13	Nature	Genome-wide associations for birth weight and correlations with adult disease.	Birth weight	133,903 European ancestry individuals, 6,635 African American individuals, 420 Turkish ancestry individuals, 365 Moroccan ancestry individuals, 395 Surinamese ancestry individuals, 840 Chinese ancestry individuals.	9,799 European ancestry individuals, 1,449 Filipino ancestry individuals.	9q22.32	PTCH1	rs28510415-G	0.09	4E-16		0.0526	[0.04-0.065] unit increase	Affymetrix, Illumina [at least 22434434] (imputed)	N
1334	chr9	98248327	98248328	rs2282040	31972866	Nagel M	2020-01-23	Acta Psychiatr Scand	Genome-wide association study of the sensitivity to environmental stress and adversity (SESA) neuroticism cluster.	Sensitivity to environmental stress and adversity	351,827 European ancestry individuals	NA	9q22.32	NR	rs2282040-G	NR	8E-13		0.02858	NR unit increase	NR [7259579]	N
1334	chr9	98255103	98255103	rs61420024	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	9q22.32		rs61420024-?	NR	3E-38		0.0269329	[0.023-0.031] unit increase	Affymetrix [20259828] (imputed)	N
1334	chr9	98256083	98256083	rs539286190	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Kidney volume	32,860 European ancestry individuals	NA	9q22.32	PTCH1	rs539286190-?	NR	5E-9		0.0635	NR L increase	Affymetrix [9390170] (imputed)	N
1334	chr9	98256083	98256083	rs539286190	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	9q22.32	NR	rs539286190-?		2E-9	(Uncinate fasciculus)			NR [8955960] (imputed)	N
1334	chr9	98256234	98256235	rs473902	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	9q22.32	PTCH1	rs473902-G	NR	2E-24		0.0548463	[0.044-0.065] unit decrease	Affymetrix [323123] (imputed)	N
1334	chr9	98256234	98256235	rs473902	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in non-smokers	77,113 European ancestry women, 47,319 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	9q22.32	PTCH1	rs473902-T	0.918	2E-7		0.045	[0.028-0.062] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1334	chr9	98256234	98256235	rs473902	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	9q22.32	PTCH1	rs473902-T	0.918	9E-8				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1334	chr9	98256234	98256235	rs473902	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	9q22.32	PTCH1	rs473902-T	0.918	6E-8		0.0413	[0.026-0.056] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1334	chr9	98256234	98256235	rs473902	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	9q22.32	PTCH1	rs473902-T	0.918	6E-6	(women)	0.0446	[0.025-0.064] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1334	chr9	98256234	98256235	rs473902	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	9q22.32	PTCH1	rs473902-T	0.9162	9E-7	(EA, men)	0.0485	[0.029-0.068] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1334	chr9	98256234	98256235	rs473902	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	9q22.32	PTCH1	rs473902-T	0.9162	5E-8	(EA,women)	0.0504	[0.032-0.069] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1334	chr9	98256234	98256235	rs473902	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	9q22.32	PTCH1	rs473902-T	0.9162	4E-12	(EA)	0.049	[0.035-0.063] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1334	chr9	98256234	98256235	rs473902	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	9q22.32	PTCH1	rs473902-T	0.9161	7E-15	(EA)	0.0584	[0.044-0.073] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1334	chr9	98256234	98256235	rs473902	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	9q22.32	PTCH1	rs473902-T	0.9161	2E-9	(EA, women)	0.0582	[0.039-0.077] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1334	chr9	98256234	98256235	rs473902	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	9q22.32	PTCH1	rs473902-T	0.9161	2E-8	(EA,men)	0.0593	[0.039-0.08] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1334	chr9	98256234	98256235	rs473902	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	9q22.32	PTCH1/FANCC	rs473902-T	0.92	2E-17		0.065	[NR] unit increase	Affymetrix, Illumina [2834208] (imputed)	N
1334	chr9	98256308	98256309	rs10512249	31097437	Plotnikov D	2019-05-16	Br J Ophthalmol	Association between birth weight and refractive error in adulthood: a Mendelian randomisation study.	Birth weight	188,039 European ancestry individuals	NA	9q22.32	NR	rs10512249-A	0.09	2E-15		0.044	[0.032-0.056] z score increase	Affymetrix [up to 10400000] (imputed)	N
1334	chr9	98256308	98256309	rs10512249	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	9q22.32	NR	rs10512249-A	0.100257200503755	4E-13		0.018660009	[0.014-0.024] unit increase	NR [NR]	N
1334	chr9	98256308	98256309	rs10512249	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	9q22.32	NR	rs10512249-A	0.100257200503755	6E-13		0.011701162	[0.0085-0.0149] unit increase	NR [NR]	N
1334	chr9	98257304	98257305	rs28633576	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	9q22.32	NR	rs28633576-T	0.2146	3E-11	(Pericalcarine)	8.344795	[5.88-10.81] unit decrease	Affymetrix, Illumina [NR]	N
1334	chr9	98257841	98257842	rs28504650	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	9q22.32	PTCH1	rs28504650-T	NR	2E-14		0.0228419	[0.017-0.029] unit increase	Affymetrix [321114] (imputed)	N
1334	chr9	98257841	98257842	rs28504650	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	9q22.32		rs28504650-?	NR	3E-48				NR [~ 8900000] (imputed)	N
1334	chr9	98259702	98259703	rs10512248	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	9q22.32		rs10512248-G	0.32	4E-56		15.78	z score increase	Affymetrix [9061022] (imputed)	N
1334	chr9	98259702	98259703	rs10512248	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	9q22.32	NR	rs10512248-G	0.3316	1E-17				NR [9056863] (imputed)	N
1334	chr9	98259702	98259703	rs10512248	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	9q22.32	NR	rs10512248-?		2E-8				NR [7428630] (imputed)	N
1334	chr9	98259702	98259703	rs10512248	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	9q22.32	PTCH1	rs10512248-?		9E-25				NR [7428630] (imputed)	N
1334	chr9	98259702	98259703	rs10512248	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	9q22.32	NR	rs10512248-?	NR	2E-32				Affymetrix [~ 8270000] (imputed)	N
1334	chr9	98259702	98259703	rs10512248	28232668	Yu Y	2017-02-24	Nat Commun	Genome-wide analyses of non-syndromic cleft lip with palate identify 14 novel loci and genetic heterogeneity.	Nonsyndromic cleft lip with cleft palate	2,033 Han Chinese ancestry cases, 4,051 Han Chinese ancestry controls	1,346 Han Chinese ancestry cases, 4,542 Han Chinese ancestry controls	9q22.32	PTCH1	rs10512248-A	0.66	5E-10		1.2195122	[NR]	Illumina [803202]	N
1334	chr9	98259702	98259703	rs10512248	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	9q22.32	PTCH1	rs10512248-T	0.62	2E-7		0.031	[0.017-0.045] unit decrease	Affymetrix, Illumina [2704730] (imputed)	N
1334	chr9	98259702	98259703	rs10512248	18391952	Weedon MN	2008-04-06	Nat Genet	Genome-wide association analysis identifies 20 loci that influence adult height.	Height	13,665 European ancestry individuals	16,482 European ancestry individuals	9q22.32	PTCH1	rs10512248-G	0.31	4E-11		0.05	[0.02-0.07] s.d. increase (males)	Affymetrix [402951]	N
1334	chr9	98260513	98260514	rs28457763	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	8,072 individuals	NA	9q22.32		rs28457763-A	0.32	9E-7				NR [13131314] (imputed)	N
1334	chr9	98260513	98260514	rs28457763	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	9q22.32		rs28457763-A	0.32	3E-121		23.42	z score increase	Affymetrix [9061022] (imputed)	N
1334	chr9	98260513	98260514	rs28457763	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	9q22.32		rs28457763-A	0.32	5E-64		16.89	z score increase	Affymetrix [9061022] (imputed)	N
1334	chr9	98260513	98260514	rs28457763	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	9q22.32	NR	rs28457763-A	0.3325	1E-17				NR [9056863] (imputed)	N
1334	chr9	98260513	98260514	rs28457763	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	9q22.32	ADAMTS9	rs28457763-?		2E-17				NR [7428630] (imputed)	N
1334	chr9	98262177	98262178	rs60417486	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on self-rated math ability (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	9q22.32		rs60417486-?	NR	5E-9				NR [NR]	N
1334	chr9	98262177	98262178	rs60417486	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on Townsend deprivation index (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	9q22.32		rs60417486-?	NR	2E-8				NR [NR]	N
1334	chr9	98262177	98262178	rs60417486	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	9q22.32	NR	rs60417486-A	0.0898775	5E-12		0.117457	[0.084-0.151] unit increase	Affymetrix [21375087] (imputed)	N
1334	chr9	98264941	98264942	rs28427480	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Lung volume	32,860 European ancestry individuals	NA	9q22.32	PTCH1	rs28427480-?	NR	1E-8		0.066	NR L increase	Affymetrix [9390170] (imputed)	N
1334	chr9	98264941	98264942	rs28427480	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	9q22.32	PTCH1	rs28427480-C	NR	4E-24		0.0530813	[0.043-0.063] unit increase	Affymetrix [323123] (imputed)	N
1334	chr9	98264941	98264942	rs28427480	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Anxiety	at least 23,606 European ancestry cases, at least 113,351 European ancestry controls	624,615 European ancestry cases, 1,310,854 European ancestry controls	9q22.32	PTCH1	rs28427480-A	0.09841	1E-25		0.040630214	[0.032-0.049] unit decrease	NR [9417325] (imputed)	N
1334	chr9	98264941	98264942	rs28427480	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on highest math class (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	9q22.32		rs28427480-?	NR	1E-8				NR [NR]	N
1334	chr9	98264941	98264942	rs28427480	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on cognitive performance (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	9q22.32		rs28427480-?	NR	7E-9				NR [NR]	N
1334	chr9	98264941	98264942	rs28427480	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	9q22.32	NR	rs28427480-C	0.100763540547517	1E-14		0.011805947	[0.0088-0.0148] unit increase	NR [NR]	N
1334	chr9	98264941	98264942	rs28427480	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	9q22.32		rs28427480-?	NR	9E-13				NR [~ 8900000] (imputed)	N
1334	chr9	98265150	98265151	rs148786069	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	9q22.32	NR	rs148786069-?	NR	9E-9				Affymetrix [~ 8270000] (imputed)	N
1334	chr9	98265900	98265901	rs16909922	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	9q22.32		rs16909922-?	NR	6E-22		0.0439	unit decrease	NR [NR]	N
1334	chr9	98265900	98265901	rs16909922	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on educational attainment (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	9q22.32		rs16909922-?	NR	3E-8				NR [NR]	N
1334	chr9	98265900	98265901	rs16909922	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on average household income before tax (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	9q22.32		rs16909922-?	NR	1E-11				NR [NR]	N
1334	chr9	98265900	98265901	rs16909922	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	9q22.32	NR	rs16909922-G	0.093659	3E-19		0.103352	[0.08-0.126] unit increase	Affymetrix [17914406] (imputed)	N
1334	chr9	98266369	98266370	rs4448343	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	9q22.32	PTCH1	rs4448343-A	0.654	5E-30		0.035	[0.029-0.041] unit decrease	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
1334	chr9	98266854	98266855	rs28446321	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	9q22.32		rs28446321-A	NR	3E-10		0.0252	[0.017-0.033] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
1334	chr9	98266854	98266855	rs28446321	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	9q22.32	PTCH1	rs28446321-A	0.0907	3E-27		0.0446	[0.037-0.053] unit increase	Affymetrix [19819130] (imputed)	N
1334	chr9	98266854	98266855	rs28446321	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	9q22.32	PTCH1	rs28446321-A	0.0907	5E-36		0.0523	[0.044-0.061] unit decrease	Affymetrix [19819130] (imputed)	N
1334	chr9	98269097	98269098	rs145922731	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	9q22.32	PTCH1	rs145922731-A	0.0106	2E-19		0.086	[0.067-0.105] unit decrease	Affymetrix [18391927] (imputed)	N
1334	chr9	98270167	98270168	rs1355620	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	9q22.32		rs1355620-?	NR	4E-21				NR [9705931] (imputed)	N
1334	chr9	98270167	98270168	rs1355620	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	9q22.32	NR	rs1355620-A	0.318091	1E-8		0.038145278	[0.025-0.051] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1334	chr9	98270167	98270168	rs1355620	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	9q22.32	Intergenic	rs1355620-A	0.6762	1E-10	(MTAG)	0.0159	[0.011-0.021] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1334	chr9	98270167	98270168	rs1355620	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	9q22.32	Intergenic	rs1355620-A	0.6762	1E-8		0.0174	[0.011-0.023] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
1334	chr9	98270170	98270171	rs1355619	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	9q22.32		rs1355619-G	NR	2E-8		0.0474	[0.031-0.064] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1334	chr9	98270170	98270171	rs1355619	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	9q22.32	Intergenic	rs1355619-A	0.6593	2E-8	(MTAG)	0.0098	[0.0065-0.0131] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1334	chr9	98270361	98270362	rs191458964	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	9q22.32	PTCH1	rs191458964-T	0.9883	2E-18		0.0779	[0.06-0.095] unit decrease	Affymetrix [18391927] (imputed)	N
1334	chr9	98272284	98272284	rs569747736	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	9q22.32	PTCH1	rs569747736-?	NR	3E-9		0.5119	[0.34-0.68] unit increase	Affymetrix [11100000] (imputed)	N
1334	chr9	98273304	98273305	rs145965565	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	9q22.32	PTCH1	rs145965565-G	NR	8E-13		0.0347472	[0.025-0.044] unit increase	Affymetrix [321016] (imputed)	N
1334	chr9	98273304	98273305	rs145965565	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 44)	4,680 European ancestry individuals	3,566 European ancestry individuals	9q22.32		rs145965565-G	0.086284683	1E-14				Illumina [7417619] (imputed)	N
1334	chr9	98273304	98273305	rs145965565	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	9q22.32		rs145965565-?	NR	9E-46				NR [~ 8900000] (imputed)	N
1334	chr9	98273304	98273305	rs145965565	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling hurt	372,047 European ancestry individuals	NA	9q22.32	PTCH1	rs145965565-T	0.0906455	3E-11		6.66	z score decrease	NR [10847151] (imputed)	N
1334	chr9	98275788	98275789	rs75614054	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	9q22.32	NR	rs75614054-T	NR	1E-8		0.02406	[0.016-0.032] unit increase	Affymetrix [10847151] (imputed)	N
1334	chr9	98275788	98275789	rs75614054	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	9q22.32	NR	rs75614054-T	NR	2E-16		8.252	z score increase	Affymetrix [10847151] (imputed)	N
1334	chr9	98275788	98275789	rs75614054	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	9q22.32	PTCH1	rs75614054-T	0.0864162	3E-14		7.62	z score increase	NR [10847151] (imputed)	N
1334	chr9	98276370	98276371	rs28410513	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	9q22.32	NR	rs28410513-T	0.2245	2E-14	(Lingual)	16.07801	[11.97-20.18] unit decrease	Affymetrix, Illumina [NR]	N
1334	chr9	98277366	98277372	rs199883506	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Monobrow	69,284 European ancestry individuals	NA	9q22.32	PTCH1, ERCC6L2	rs199883506-?	NR	1E-13		0.035	[0.044-0.026] unit decrease	Illumina [12039491] (imputed)	N
1334	chr9	98278331	98278332	rs28496034	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	9q22.32	NR	rs28496034-C	0.6673	1E-16	(Lateral Occipital)	23.256474	[17.75-28.76] unit increase	Affymetrix, Illumina [NR]	N
1334	chr9	98278412	98278413	rs113154802	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	9q22.32	PTCH1	rs113154802-C	0.889	4E-8		1.06	[1.04-1.08]	Affymetrix, Illumina [11800000] (imputed)	N
1334	chr9	98278412	98278413	rs113154802	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	9q22.32		rs113154802-?	NR	2E-33				NR [~ 8900000] (imputed)	N
1334	chr9	98278643	98278644	rs28591501	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	9q22.32	PTCH1	rs28591501-A	NR	3E-11		0.0228733	[0.016-0.03] unit increase	Affymetrix [323858] (imputed)	N
1334	chr9	98279369	98279370	rs28704635	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	9q22.32	PTCH1	rs28704635-A	NR	7E-15		0.0282702	[0.021-0.035] unit increase	Affymetrix [323123] (imputed)	N
1334	chr9	98280323	98280324	rs34585033	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	9q22.32	PTCH1	rs34585033-A	0.3372	5E-6		0.0316	[0.018-0.045] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1334	chr9	98280323	98280323	rs746591932	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	9q22.32	PTCH1	rs746591932-A	NR	2E-36		0.0412856	[0.035-0.048] unit increase	Affymetrix [323123] (imputed)	N
1334	chr9	98281824	98281825	rs28393820	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	9q22.32	PTCH1	rs28393820-C	NR	4E-12		0.0204856	[0.015-0.026] unit increase	Affymetrix [321016] (imputed)	N
1334	chr9	98283092	98283093	rs28536742	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	9q22.32		rs28536742-T	NR	2E-10		0.0135	[0.0094-0.0176] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
1334	chr9	98283989	98283990	rs16909923	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	9q22.32		rs16909923-G	0.172583	4E-10		0.0224064	[0.015-0.029] unit increase	Illumina [13479924] (imputed)	N
1334	chr9	98286477	98286478	rs28434654	30452639	Butali A	2018-11-19	Hum Mol Genet	Genomic analyses in african populations identify novel risk loci for cleft palate.	Cleft palate	205 Sub-Saharan African ancestry cases, 2,159 Sub-Saharan African ancestry controls	100 Sub-Saharan African ancestry cases, 79 African American cases, 648 Sub-Saharan African ancestry controls, 186 African American controls	9q22.32	NR	rs28434654-?	NR	5E-7		5.028	NR z-score increase	Illumina [~ 17000000] (imputed)	N
1334	chr9	98291447	98291448	rs3858092	30452639	Butali A	2018-11-19	Hum Mol Genet	Genomic analyses in african populations identify novel risk loci for cleft palate.	Cleft palate	205 Sub-Saharan African ancestry cases, 2,159 Sub-Saharan African ancestry controls	100 Sub-Saharan African ancestry cases, 79 African American cases, 648 Sub-Saharan African ancestry controls, 186 African American controls	9q22.32	NR	rs3858092-A	NR	3E-7		5.116	NR z-score increase	Illumina [~ 17000000] (imputed)	N
1334	chr9	98293564	98293565	rs28689133	30452639	Butali A	2018-11-19	Hum Mol Genet	Genomic analyses in african populations identify novel risk loci for cleft palate.	Cleft palate	205 Sub-Saharan African ancestry cases, 2,159 Sub-Saharan African ancestry controls	100 Sub-Saharan African ancestry cases, 79 African American cases, 648 Sub-Saharan African ancestry controls, 186 African American controls	9q22.32	NR	rs28689133-?	NR	4E-7		5.079	NR z-score increase	Illumina [~ 17000000] (imputed)	N
1334	chr9	98294447	98294448	rs28637199	30452639	Butali A	2018-11-19	Hum Mol Genet	Genomic analyses in african populations identify novel risk loci for cleft palate.	Cleft palate	205 Sub-Saharan African ancestry cases, 2,159 Sub-Saharan African ancestry controls	100 Sub-Saharan African ancestry cases, 79 African American cases, 648 Sub-Saharan African ancestry controls, 186 African American controls	9q22.32	NR	rs28637199-?	NR	5E-7		5.039	NR z-score increase	Illumina [~ 17000000] (imputed)	N
1334	chr9	98295014	98295015	rs3847316	30452639	Butali A	2018-11-19	Hum Mol Genet	Genomic analyses in african populations identify novel risk loci for cleft palate.	Cleft palate	205 Sub-Saharan African ancestry cases, 2,159 Sub-Saharan African ancestry controls	100 Sub-Saharan African ancestry cases, 79 African American cases, 648 Sub-Saharan African ancestry controls, 186 African American controls	9q22.32	NR	rs3847316-?	NR	5E-7		5.026	NR z-score increase	Illumina [~ 17000000] (imputed)	N
1334	chr9	98297219	98297220	rs113851275	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (computer use)	408,815 European ancestry individuals	NA	9q22.32	NR	rs113851275-?		3E-9		0.0209442	[0.014-0.028] unit decrease	Affymetrix [19400418] (imputed)	N
1334	chr9	98298351	98298352	rs28778940	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	9q22.32	PTCH1	rs28778940-A	NR	4E-8		0.0186201	[0.012-0.025] unit increase	Affymetrix [323858] (imputed)	N
1334	chr9	98298351	98298352	rs28778940	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	9q22.32	PTCH1, LINC00476	rs28778940-?	NR	2E-27		0.03866129	[0.032-0.046] unit increase	Illumina [27896057] (imputed)	N
1334	chr9	98298351	98298352	rs28778940	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	9q22.32	NR	rs28778940-?	NR	4E-19		0.20936	[0.16-0.26] unit increase	Affymetrix [7794483] (imputed)	N
1334	chr9	98298351	98298352	rs28778940	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	9q22.32	NR	rs28778940-?	NR	2E-8	(female)	0.14514	[0.095-0.196] unit increase	Affymetrix [7794483] (imputed)	N
1334	chr9	98298351	98298352	rs28778940	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	9q22.32	NR	rs28778940-?	NR	2E-12	(male)	0.26032	[0.19-0.33] unit increase	Affymetrix [7794483] (imputed)	N
1334	chr9	98299299	98299300	rs73529860	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	9q22.32	PTCH1	rs73529860-T	0.1184	5E-11		0.019741016	[0.014-0.026] unit decrease	Illumina [9339358] (imputed)	N
1334	chr9	98299677	98299678	rs28713678	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	9q22.32	PTCH1	rs28713678-T	0.655799	8E-13		0.00171456	[0.0012-0.0022] unit increase	Affymetrix [13995440] (imputed)	N
1334	chr9	98302915	98302916	rs16909970	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	9q22.32		rs16909970-G	NR	3E-16		0.0148	[0.011-0.018] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1334	chr9	98303428	98303429	rs28453815	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	9q22.32	NR	rs28453815-A	0.32956	2E-10		0.012567	[0.0087-0.0164] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
1335	chr9	98307989	98307990	rs16909978	31809533	Han X	2019-09-06	Hum Mol Genet	Genome-wide association analysis of 95 549 individuals identifies novel loci and genes influencing optic disc morphology.	Optic disc size	67,040 British ancestry individuals	28,509 European ancestry individuals	9q22.32	PTCH1	rs16909978-A	0.11	9E-10		0.02	unit increase	Affymetrix [8928767] (imputed)	N
1335	chr9	98308001	98308002	rs78893982	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	9q22.32	PTCH1	rs78893982-G	NR	2E-16		0.0523929	[0.04-0.065] unit increase	Affymetrix [323123] (imputed)	N
1335	chr9	98308001	98308002	rs78893982	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	9q22.32	NR	rs78893982-T	NR	1E-9		6.071	z score decrease	Affymetrix [10847151] (imputed)	N
1335	chr9	98312125	98312126	rs2405373	30452639	Butali A	2018-11-19	Hum Mol Genet	Genomic analyses in african populations identify novel risk loci for cleft palate.	Cleft palate	205 Sub-Saharan African ancestry cases, 2,159 Sub-Saharan African ancestry controls	100 Sub-Saharan African ancestry cases, 79 African American cases, 648 Sub-Saharan African ancestry controls, 186 African American controls	9q22.32	NR	rs2405373-?	NR	4E-7		5.058	NR z-score decrease	Illumina [~ 17000000] (imputed)	N
1335	chr9	98314413	98314414	rs76239439	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	9q22.32	PTCH1	rs76239439-A	NR	5E-9		0.0351723	[0.023-0.047] unit increase	Affymetrix [321016] (imputed)	N
1335	chr9	98316093	98316094	rs481237	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	9q22.32	PTCH1	rs481237-A	NR	5E-15		0.0440916	[0.033-0.055] unit decrease	Affymetrix [321114] (imputed)	N
1335	chr9	98316093	98316094	rs481237	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	9q22.32	PTCH1	rs481237-A	NR	5E-15		0.0402945	[0.03-0.05] unit decrease	Affymetrix [321016] (imputed)	N
1335	chr9	98316330	98316331	rs663344	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	9q22.32	PTCH1	rs663344-C	NR	8E-11		0.0263781	[0.018-0.034] unit decrease	Affymetrix [323123] (imputed)	N
1335	chr9	98317950	98317951	rs62561366	29923122	Kakuta Y	2018-06-19	J Gastroenterol	NUDT15 codon 139 is the best pharmacogenetic marker for predicting thiopurine-induced severe adverse events in Japanese patients with inflammatory bowel disease: a multicenter study.	Thiopurine-induced pancreatitis in inflammatory bowel disease	18 Japanese ancestry cases, 1,202 Japanese ancestry controls	NA	9q22.32	PTCH1	rs62561366-?	NR	5E-7		7.0	[3.3-14.8]	Affymetrix [> 5000000] (imputed)	N
1335	chr9	98321411	98321412	rs76340814	34450027	Boer CG	2021-08-24	Cell	Deciphering osteoarthritis genetics across 826,690 individuals from 9 populations.	Osteoarthritis of the hip or knee (with total joint replacement)	40,887 European ancestry cases, 327,689 European ancestry controls	NA	9q22.32		rs76340814-A	0.0525	2E-9		0.8890516	[0.855546105-0.923869265]	Affymetrix, Illumina [NR] (imputed)	N
1335	chr9	98328818	98328819	rs28670202	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	9q22.32	RP11-332M4.1	rs28670202-G	NR	2E-9		0.0213021	[0.014-0.028] unit increase	Affymetrix [321114] (imputed)	N
1335	chr9	98344865	98344866	rs67053006	33893285	Guindo-Martinez M	2021-04-23	Nat Commun	The impact of non-additive genetic associations on age-related complex diseases.	Asthma	9,209 European ancestry cases, 47,428 European ancestry controls	NA	9q22.32		rs67053006-G	0.1385499	4E-8		0.87		Affymetrix [15607971] (imputed)	N
1335	chr9	98355270	98355271	rs12339113	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	9q22.32	NR	rs12339113-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1335	chr9	98362491	98362492	rs928618	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Skin reflectance (Melanin index)	720 South Asian ancestry individuals		9q22.32	NR	rs928618-G	NR	3E-6	(conditioned on rs1426654)	0.399584	[0.23-0.57] unit increase	Affymetrix, Illumina [at least 398118] (imputed)	N
1335	chr9	98364546	98364547	rs10120219	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	9q22.32		rs10120219-T	0.508006	2E-28		0.0222027	[0.018-0.026] unit increase	Illumina [13479295] (imputed)	N
1335	chr9	98364546	98364547	rs10120219	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	9q22.32	RP11-332M4.1	rs10120219-T	NR	2E-9		0.0214507	[0.014-0.028] unit increase	Affymetrix [321114] (imputed)	N
1335	chr9	98364546	98364547	rs10120219	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	9q22.32	PTCH1, LINC00476	rs10120219-?	NR	9E-29		0.03162223	[0.026-0.037] unit increase	Illumina [27896057] (imputed)	N
1335	chr9	98365271	98365272	rs140724264	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Schizoaffective disorder-bipolar type	977 European ancestry cases, 31,358 European ancestry controls	NA	9q22.32	NR	rs140724264-G	0.025000000000000022	2E-7		2.0680385	[NR]	NR [9372253] (imputed)	N
1335	chr9	98368444	98368445	rs2405064	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	9q22.32	NR	rs2405064-T	0.0992	4E-6	(EA)	0.0484	[0.028-0.069] unit increase	Illumina [~ 11800000] (imputed)	N
1335	chr9	98368760	98368761	rs1984119	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	9q22.32		rs1984119-C	NR	2E-84		0.0278	[0.025-0.031] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1335	chr9	98368760	98368761	rs1984119	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	9q22.32	RP11-332M4.1	rs1984119-C	NR	2E-11		0.0220641	[0.016-0.029] unit decrease	Affymetrix [321114] (imputed)	N
1335	chr9	98368760	98368761	rs1984119	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	9q22.32	RP11-332M4.1	rs1984119-C	NR	6E-15		0.0278672	[0.021-0.035] unit decrease	Affymetrix [321114] (imputed)	N
1335	chr9	98368760	98368761	rs1984119	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	9q22.32	RP11-332M4.1	rs1984119-C	NR	3E-8		0.0180381	[0.012-0.024] unit decrease	Affymetrix [321016] (imputed)	N
1335	chr9	98368760	98368761	rs1984119	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	9q22.32	RP11-332M4.1	rs1984119-C	NR	6E-15		0.027637	[0.021-0.035] unit decrease	Affymetrix [323123] (imputed)	N
1335	chr9	98368760	98368761	rs1984119	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	9q22.32	AL392185.1	rs1984119-T	0.7441	1E-26		0.0233	[0.019-0.028] unit increase	Affymetrix [18391927] (imputed)	N
1335	chr9	98368760	98368761	rs1984119	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	9q22.32	NR	rs1984119-?	NR	5E-26				Affymetrix [~ 8270000] (imputed)	N
1335	chr9	98368760	98368761	rs1984119	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9q22.32		rs1984119-?	NR	2E-111				NR [~ 8900000] (imputed)	N
1335	chr9	98368760	98368761	rs1984119	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	9q22.32	RP11-332M4.1	rs1984119-T	0.7423	2E-7		0.0397	[0.025-0.055] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1335	chr9	98368760	98368761	rs1984119	25281659	van der Valk RJ	2014-10-03	Hum Mol Genet	A novel common variant in DCST2 is associated with length in early life and height in adulthood.	Infant length	28,238 European ancestry individuals	NA	9q22.32	PTCH1	rs1984119-C	0.26	2E-10		0.063	[0.043-0.083] unit decrease	Affymetrix, Illumina [2193675] (imputed)	N
1335	chr9	98372403	98372404	rs12235468	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	9q22.32	NR	rs12235468-?	NR	3E-10				Affymetrix [~ 8270000] (imputed)	N
1335	chr9	98373099	98373100	rs10988639	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	9q22.32	RP11-332M4.1	rs10988639-G	NR	7E-15		0.0259685	[0.019-0.032] unit increase	Affymetrix [321114] (imputed)	N
1335	chr9	98373099	98373100	rs10988639	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	9q22.32	RP11-332M4.1	rs10988639-G	NR	2E-9		0.0217189	[0.015-0.029] unit increase	Affymetrix [321114] (imputed)	N
1335	chr9	98373099	98373100	rs10988639	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	9q22.32	RP11-332M4.1	rs10988639-G	NR	6E-11		0.0215753	[0.015-0.028] unit increase	Affymetrix [321016] (imputed)	N
1335	chr9	98376698	98376699	rs10988802	20237162	Bozaoglu K	2010-03-17	J Clin Endocrinol Metab	Chemerin, a novel adipokine in the regulation of angiogenesis.	Chemerin levels	858 Mexican American family members and individuals	NA	9q22.32	PTCH	rs10988802-?	NR	4E-6				Illumina [542944]	N
1335	chr9	98377521	98377521	rs11282370	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	9q22.32	RP11-332M4.1	rs11282370-CCCCCTG	NR	2E-9		0.0217233	[0.015-0.029] unit increase	Affymetrix [321114] (imputed)	N
1335	chr9	98380221	98380222	rs817300	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	9q22.32	RP11-332M4.1	rs817300-A	NR	1E-9		0.0325977	[0.022-0.043] unit decrease	Affymetrix [321114] (imputed)	N
1335	chr9	98380221	98380222	rs817300	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	9q22.32	RP11-332M4.1	rs817300-A	NR	5E-15		0.0458169	[0.034-0.057] unit decrease	Affymetrix [321114] (imputed)	N
1335	chr9	98380221	98380222	rs817300	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	9q22.32	RP11-332M4.1	rs817300-A	NR	3E-16		0.0435087	[0.033-0.054] unit decrease	Affymetrix [321016] (imputed)	N
1335	chr9	98380221	98380222	rs817300	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	9q22.32	RP11-332M4.1	rs817300-A	NR	8E-18		0.0501108	[0.039-0.062] unit decrease	Affymetrix [323123] (imputed)	N
1335	chr9	98380221	98380222	rs817300	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	9q22.32	NR	rs817300-?	NR	8E-25				Affymetrix [~ 8270000] (imputed)	N
1335	chr9	98380221	98380222	rs817300	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	9q22.32	PTCH1	rs817300-A	0.071	4E-34		0.085	[0.071-0.099] unit decrease	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
1335	chr9	98385013	98385014	rs10989023	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	9q22.32	RP11-332M4.1	rs10989023-T	NR	2E-9		0.0243907	[0.016-0.032] unit increase	Affymetrix [321016] (imputed)	N
1335	chr9	98395620	98395621	rs4742700	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	9q22.32	NR	rs4742700-?	NR	1E-14				Affymetrix [~ 8270000] (imputed)	N
1335	chr9	98398909	98398910	rs10819952	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	9q22.32	RP11-180I4.2	rs10819952-C	NR	1E-8		0.0228068	[0.015-0.031] unit increase	Affymetrix [321114] (imputed)	N
1335	chr9	98398955	98398956	rs10819953	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	9q22.32	RP11-180I4.2	rs10819953-G	NR	5E-13		0.0267024	[0.019-0.034] unit increase	Affymetrix [321114] (imputed)	N
1335	chr9	98401631	98401632	rs2571346	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	9q22.32	RP11-180I4.2	rs2571346-C	NR	1E-9		0.0495347	[0.034-0.066] unit decrease	Affymetrix [321016] (imputed)	N
1335	chr9	98403219	98403220	rs117381175	33691233	Peterson RE	2021-02-18	J Psychiatr Res	Genome-wide analyses of smoking behaviors in schizophrenia: Findings from the Psychiatric Genomics Consortium.	smoking initiation in schizophrenia	5,255 European ancestry individuals	1,802 East Asian individuals	9q22.32	intergenic	rs117381175-?	NR	7E-7				NR [9500000] (imputed)	N
1335	chr9	98405229	98405230	rs12351226	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	9q22.32	RP11-180I4.2	rs12351226-T	NR	3E-8		0.0211211	[0.014-0.029] unit increase	Affymetrix [321114] (imputed)	N
1335	chr9	98405229	98405230	rs12351226	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	9q22.32	RP11-180I4.2	rs12351226-T	0.1654	3E-6		0.0431	[0.025-0.061] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1335	chr9	98410404	98410405	rs10990303	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	9q22.32	NR	rs10990303-?	NR	2E-25				Affymetrix [~ 8270000] (imputed)	N
1335	chr9	98410404	98410405	rs10990303	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	9q22.32	PTCH1	rs10990303-T	0.2283	8E-9	(women)	0.0365	[0.024-0.049] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1335	chr9	98410404	98410405	rs10990303	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	9q22.32	PTCH1	rs10990303-T	0.2283	3E-10		0.0271	[0.019-0.036] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1335	chr9	98410404	98410405	rs10990303	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	9q22.32	PTCH1	rs10990303-T	0.2283	1E-6	(men)	0.0312	[0.019-0.044] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1335	chr9	98410404	98410405	rs10990303	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	9q22.32	PTCH1	rs10990303-T	0.2238	7E-11	(EA)	0.0299	[0.021-0.039] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1335	chr9	98410404	98410405	rs10990303	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	9q22.32	PTCH1	rs10990303-T	0.2238	3E-8	(EA, men)	0.0382	[0.025-0.052] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1335	chr9	98410404	98410405	rs10990303	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	9q22.32	PTCH1	rs10990303-T	0.2305	2E-8	(women)	0.0401	[0.026-0.054] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1335	chr9	98410404	98410405	rs10990303	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	9q22.32	PTCH1	rs10990303-T	0.2283	6E-9		0.0286	[0.019-0.038] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1335	chr9	98410404	98410405	rs10990303	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	9q22.32	PTCH1	rs10990303-T	0.2275	3E-6	(men)	0.0344	[0.02-0.049] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1335	chr9	98410404	98410405	rs10990303	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	9q22.32	PTCH1	rs10990303-T	0.2243	1E-7	(EA, men)	0.0403	[0.025-0.055] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1335	chr9	98410404	98410405	rs10990303	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	9q22.32	PTCH1	rs10990303-T	0.2238	6E-9	(EA)	0.0304	[0.02-0.041] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1335	chr9	98410404	98410405	rs10990303	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	9q22.32	PTCH1	rs10990303-?	0.2283	3E-6	(men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1335	chr9	98410404	98410405	rs10990303	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	9q22.32	PTCH1	rs10990303-?	0.2283	2E-8	(women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1335	chr9	98410404	98410405	rs10990303	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	9q22.32	PTCH1	rs10990303-?	0.2283	1E-9				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1335	chr9	98410404	98410405	rs10990303	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	9q22.32	PTCH1	rs10990303-?	0.2238	9E-8	(EA, men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1335	chr9	98410404	98410405	rs10990303	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	9q22.32	PTCH1	rs10990303-?	0.2238	5E-10	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1335	chr9	98424221	98424222	rs10820612	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	9q22.32	NR	rs10820612-?	NR	8E-15				Affymetrix [~ 8270000] (imputed)	N
1335	chr9	98429265	98429266	rs11790994	18821565	Lasky-Su J	2008-12-05	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association scan of quantitative traits for attention deficit hyperactivity disorder identifies novel associations and confirms candidate gene associations.	Inattentive symptoms	930 European ancestry trios	NA	9q22.32	intergenic	rs11790994-?	NR	2E-7	(binary)			Perlegen [429981]	N
1335	chr9	98432669	98432670	rs7869411	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	9q22.32	RP11-180I4.2	rs7869411-A	NR	2E-9		0.0174301	[0.012-0.023] unit decrease	Affymetrix [321114] (imputed)	N
1335	chr9	98432669	98432670	rs7869411	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	9q22.32	RP11-180I4.2	rs7869411-A	NR	6E-12		0.0215913	[0.015-0.028] unit decrease	Affymetrix [321114] (imputed)	N
1335	chr9	98432669	98432670	rs7869411	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	9q22.32	RP11-180I4.2	rs7869411-A	NR	3E-11		0.0207806	[0.015-0.027] unit decrease	Affymetrix [323123] (imputed)	N
1335	chr9	98434391	98434392	rs10820788	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	9q22.32	NR	rs10820788-?	NR	6E-9				Affymetrix [~ 8270000] (imputed)	N
1336	chr9	98438775	98438776	rs354277	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid respiratory support vs population)	495 European ancestry cases, 680,440 European ancestry controls, 102 Hispanic or Latin American cases, 94,330 Hispanic or Latin American controls, 39 Black or African American cases, 22,410 Black or African American controls	NA	9q22.32		rs354277-?	NR	9E-7		0.3279305	[0.2-0.46] unit decrease	Illumina [9842460] (imputed)	N
1336	chr9	98440824	98440825	rs10816341	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	9q22.32		rs10816341-?	NR	3E-11				NR [~ 8900000] (imputed)	N
1336	chr9	98445631	98445632	rs817183	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	9q22.32	RP11-180I4.2	rs817183-G	NR	2E-11		0.0412738	[0.029-0.053] unit decrease	Affymetrix [321114] (imputed)	N
1336	chr9	98445631	98445632	rs817183	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	9q22.32	RP11-180I4.2	rs817183-G	NR	8E-9		0.0321849	[0.021-0.043] unit decrease	Affymetrix [321016] (imputed)	N
1336	chr9	98445631	98445632	rs817183	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	9q22.32	RP11-180I4.2	rs817183-G	NR	2E-11		0.0411254	[0.029-0.053] unit decrease	Affymetrix [323123] (imputed)	N
1336	chr9	98447171	98447172	rs817184	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	9q22.32	RP11-180I4.2	rs817184-T	NR	2E-8		0.0189141	[0.012-0.026] unit decrease	Affymetrix [321114] (imputed)	N
1336	chr9	98467041	98467042	rs186705447	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	9q22.32	NR	rs186705447-?	NR	5E-8				Affymetrix [~ 8270000] (imputed)	N
1336	chr9	98469358	98469359	rs817156	31533690	Orlova E	2019-09-18	BMC Oral Health	Pilot GWAS of caries in African-Americans shows genetic heterogeneity.	Dental caries (decayed, missing and filled teeth)	109 African American adults	NA	9q22.32	PTCH1	rs817156-?		4E-6		4.865	[2.94-6.79] unit increase	Illumina [~ 4900000] (imputed)	N
1336	chr9	98473645	98473646	rs700992	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9q22.32		rs700992-?	NR	9E-33				NR [~ 8900000] (imputed)	N
1336	chr9	98480512	98480513	rs112153762	32066700	Zhang R	2020-02-05	Transl Psychiatry	Genome-wide study of immune biomarkers in cerebrospinal fluid and serum from patients with bipolar disorder and controls.	Serum immune biomarker levels	184 Scandinavian ancestry bipolar disorder cases, 107 Scandinavian ancestry controls	NA	9q22.32	intergenic	rs112153762-C	0.977	3E-8	(YKL-40)	39896.0	NR unit decrease	Affymetrix, Illumina [> 5000000] (imputed)	N
1336	chr9	98482949	98482950	rs139276377	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9q22.32	NR	rs139276377-C	0.01568	2E-8	(LGALS1)	0.2772	NR unit increase	Illumina [1671387] (imputed)	N
1336	chr9	98489820	98489821	rs10817081	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	9q22.32	NR	rs10817081-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
1336	chr9	98497302	98497303	rs16910193	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	9q22.32	NR	rs16910193-?	NR	8E-17				Affymetrix [NR]	N
1336	chr9	98515033	98515034	rs62558978	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	9q22.32	PTCH1, LINC00476	rs62558978-?	NR	5E-10		0.021614667	[0.015-0.028] unit decrease	Illumina [27896057] (imputed)	N
1336	chr9	98523828	98523829	rs7864076	33407418	Jonsson A	2021-01-06	BMC Med Genomics	Genome-wide association study of circulating levels of glucagon during an oral glucose tolerance test.	Glucagon levels in response to oral glucose tolerance test (decremental area under the curve for 0-30 minutes)	553 European ancestry individuals, 1,346 individuals	NA	9q22.32	ERCC6L2	rs7864076-T	0.49	1E-6		0.162	[0.097-0.227] unit decrease	Illumina [NR] (imputed)	N
1336	chr9	98541231	98541232	rs7047415	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	9q22.32	DKFZP434H0512	rs7047415-T	NR	3E-7	(between families)	5.096	unit increase	Affymetrix [up to 15107142] (imputed)	N
1336	chr9	98552762	98552763	rs10759883	28440896	Yin X	2017-04-25	Am J Med Genet B Neuropsychiatr Genet	Genome-wide meta-analysis identifies a novel susceptibility signal at CACNA2D3 for nicotine dependence.	Nicotine dependence	7,297 European ancestry cases, 5,577 European ancestry controls, 918 European ancestry whole genome sequenced cases, 921 European ancestry whole genome sequenced controls, African American cases, 1,500 African American controls	NA	9q22.32	LINC00476	rs10759883-T		1E-6		0.02	[0.0004-0.0396] unit decrease	Illumina [at least 3251541] (imputed)	N
1336	chr9	98553262	98553263	rs62559007	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	9q22.32	LINC00476	rs62559007-T	NR	3E-14		0.021632	[0.016-0.027] unit decrease	Affymetrix [321016] (imputed)	N
1336	chr9	98556893	98556894	rs1369156	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	9q22.32	LINC00476	rs1369156-G	NR	2E-8		0.0165085	[0.011-0.022] unit decrease	Affymetrix [321788] (imputed)	N
1336	chr9	98557460	98557461	rs2405134	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	9q22.32	PTCH1, ERCC6L2	rs2405134-A	0.31	2E-8		5.58	z-score increase	Affymetrix [4311822] (imputed)	N
1337	chr9	98568542	98568543	rs816677	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	9q22.32	LINC00476	rs816677-C	NR	2E-8		0.0178617	[0.012-0.024] unit increase	Affymetrix [323123] (imputed)	N
1337	chr9	98609688	98609689	rs137864676	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		LINC00476	rs137864676-?	NR	9E-9		2.23106	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1337	chr9	98609688	98609689	rs137864676	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		LINC00476	rs137864676-?	NR	1E-8	(male)	2.0784	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1337	chr9	98613632	98613633	rs10760267	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	9q22.32	NR	rs10760267-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
1337	chr9	98626547	98626548	rs67383717	27545685	Biernacka JM	2016-08-03	Parkinsonism Relat Disord	Genome-wide gene-environment interaction analysis of pesticide exposure and risk of Parkinson's disease.	Parkinson's disease (pesticide exposure interaction)	364 cases, 364 sibling controls	NA	9q22.32	ERCC6L2, LINC00476	rs67383717-?	NR	2E-6				Perlegen [735843] (imputed)	N
1337	chr9	98649231	98649232	rs689860	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	9q22.32	ERCC6L2	rs689860-A	NR	4E-8		0.0163471	[0.011-0.022] unit increase	Affymetrix [321016] (imputed)	N
1337	chr9	98649231	98649232	rs689860	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	9q22.32	NR	rs689860-?	NR	5E-9				Affymetrix [~ 8270000] (imputed)	N
1337	chr9	98649231	98649232	rs689860	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9q22.32		rs689860-?	NR	3E-26				NR [~ 8900000] (imputed)	N
1338	chr9	98736058	98736059	rs62562991	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Monokine induced by gamma interferon levels	3,685 Finnish ancestry individuals	NA	9q22.32	NR	rs62562991-G	NR	8E-7		0.6236	[0.38-0.87] SD units decrease	NR [10700000] (imputed)	N
1338	chr9	98788300	98788301	rs4743469	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	9q22.32	NR	rs4743469-A	0.036661	1E-10		0.032476	[0.023-0.042] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1338	chr9	98801275	98801276	rs75729479	34130359	Curtis SW	2021-06-15	Genet Epidemiol	FAT4 identified as a potential modifier of orofacial cleft laterality.	Left unilateral cleft lip	68 Asian ancestry cases, 78 European ancestry cases, 70 Hispanic cases, 1,626 controls	NA	9q22.32	NR	rs75729479-?		3E-6		2.08	[1.52-2.84]	Illumina [539473] (imputed)	N
1338	chr9	98806318	98806319	rs10819752	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	9q22.32	LINC00092	rs10819752-C	NR	8E-9		0.0163949	[0.011-0.022] unit decrease	Affymetrix [321016] (imputed)	N
1338	chr9	98815144	98815145	rs1547205	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		9q22.32	ERCC6L2	rs1547205-G	0.900067	1E-8		0.0132049	[0.0087-0.0178] unit increase	Affymetrix [12370749]	N
1338	chr9	98816483	98816484	rs1547201	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	9q22.32	NR	rs1547201-C	0.530244325912734	4E-6	(IGP5)	0.1449	[0.083-0.206] unit decrease	Illumina [~ 2500000] (imputed)	N
1338	chr9	98816483	98816484	rs1547201	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	9q22.32	NR	rs1547201-C	0.530022081441923	7E-6	(IGP45)	0.1416	[0.08-0.203] unit decrease	Illumina [~ 2500000] (imputed)	N
1338	chr9	98827813	98827814	rs7867155	24047446	Schosser A	2013-09-19	World J Biol Psychiatry	Genome-wide association study of co-occurring anxiety in major depression.	Anxiety in major depressive disorder	1,080 European ancestry cases, 442 European ancestry controls	NA	9q22.32	LOC158435	rs7867155-?	0.88	9E-7	(Dichotomous)	1.84	[NR]	Illumina [471581]	N
1339	chr9	98841015	98841016	rs10989172	29206233	Shendre A	2017-12-04	PLoS One	Genome-wide admixture and association study of subclinical atherosclerosis in the Women's Interagency HIV Study (WIHS).	Common carotid intima-media thickness in HIV negative individuals	288 Black non-Hispanic HIV-negative women	NA	9q22.32	LOC158435	rs10989172-T	NR	5E-6		0.0223	[NR] unit increase	Illumina [1124301]	N
1339	chr9	98844058	98844059	rs12346945	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	9q22.32	NR	rs12346945-?	NR	2E-7	(Latino)	1.3995	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1339	chr9	98867812	98867813	rs10819861	25055868	Sano M	2014-07-23	Hum Mol Genet	Genome-wide association study of electrocardiographic parameters identifies a new association for PR interval and confirms previously reported associations.	Electrocardiographic traits	2,994 Japanese ancestry individuals	6,805 Korean ancestry individuals	9q22.32	NCRNA00092, LOC100128771	rs10819861-G	0.476	7E-7	(QT)	1.157	[NR] unit increase	Illumina [~ 2500000]	N
1339	chr9	98877902	98877903	rs111677654	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Monobrow	69,284 European ancestry individuals	NA	9q22.32	LOC158434	rs111677654-?	NR	4E-11		0.032	[0.042-0.023] unit decrease	Illumina [12039491] (imputed)	N
1339	chr9	98878880	98878881	rs72743974	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	9q22.32	LOC158434	rs72743974-A	0.8328	6E-6		0.0153	[0.0086-0.022] unit decrease	Affymetrix [19819130] (imputed)	N
1339	chr9	98878880	98878881	rs72743974	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	9q22.32	LOC158434	rs72743974-A	0.8328	4E-13		0.0232	[0.017-0.029] unit decrease	Affymetrix [19819130] (imputed)	N
1339	chr9	98878880	98878881	rs72743974	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	9q22.32	LOC158434	rs72743974-A	0.8328	7E-13		0.0225	[0.016-0.029] unit decrease	Affymetrix [19819130] (imputed)	N
1339	chr9	98878880	98878881	rs72743974	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	9q22.32		rs72743974-?	NR	1E-16				NR [~ 8900000] (imputed)	N
1339	chr9	98892597	98892598	rs74879286	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris color (L* coordinate)	329 South Asian ancestry individuals		9q22.32	intergenic	rs74879286-G	0.116266	7E-6		0.639657	[0.37-0.91] unit decrease	Illumina [640625] (imputed)	N
1339	chr9	98907330	98907331	rs4077231	30926877	Brcic L	2019-03-29	Sci Rep	Genome-wide association analysis suggests novel loci underlying thyroid antibodies in Hashimoto's thyroiditis.	Anti-thyroid peroxidase (TPOAb) levels in Hashimoto's thyroiditis	405 European ancestry cases	NA	9q22.32	LOC158434	rs4077231-A	0.609	6E-6		0.31	[0.18-0.44] unit decrease	Illumina [6007542] (imputed)	N
1339	chr9	98910107	98910108	rs11496531	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9q22.32		rs11496531-?	NR	3E-10				NR [~ 8900000] (imputed)	N
1339	chr9	98930249	98930250	rs9785234	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	9q22.32		rs9785234-G	0.17	2E-9		6.01	z score increase	Affymetrix [9061022] (imputed)	N
1339	chr9	98930249	98930250	rs9785234	26420894	Wuttke M	2015-09-28	Nephrol Dial Transplant	Genetic loci associated with renal function measures and chronic kidney disease in children: the Pediatric Investigation for Genetic Factors Linked with Renal Progression Consortium.	Glomerular filtration rate in chronic kidney disease	up to 744 Central European ancestry child cases, up to 397 Turkish ancestry child cases	NA	9q22.32	LOC158434, HSD17B3	rs9785234-G	0.28	9E-6	(Turkish ancestry)	0.13	[0.071-0.189] unit increase	Illumina [~ 8300000] (imputed)	N
1339	chr9	98932748	98932749	rs7862977	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Letter-number span reordering	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	9q22.32	HSD17B3	rs7862977-G	NR	3E-6		0.5585527	[0.32-0.8] unit increase	Illumina [> 6200000] (imputed)	N
1339	chr9	98935332	98935333	rs10819950	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	9q22.32	SLC35D2	rs10819950-?	NR	7E-6	(choline)	0.20783389	[0.12-0.3] unit increase	Affymetrix [at least 2500000] (imputed)	N
1339	chr9	98939412	98939413	rs72745804	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9q22.32		rs72745804-?	NR	4E-12				NR [~ 8900000] (imputed)	N
1340	chr9	98998060	98998061	rs8190569	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cerebrospinal fluid AB1-42 levels	up to 189 European and other ancestry early mild cognitive impairment cases,  up to 251 European and other ancestry late mild cognitive impairment cases,  up to 121 European and other ancestry Alzheimer's disease cases,  up to 215 European and other ancestry healthy controls	up to 3 European and other ancestry significant memory concern cases,  up to 57 European and other ancestry early mild cognitive impairment cases,   up to 61 European and other ancestry late mild cognitive impairment cases,  up to 62 European and other ancestry Alzheimer's disease cases,  up to 21 European and other ancestry healthy controls	9q22.32	HSD17B3	rs8190569-T	0.01	9E-7		0.24	[NR] unit increase	Illumina [~ 9000000] (imputed)	N
1340	chr9	99002184	99002185	rs8190560	24665060	Argos M	2014-03-24	J Med Genet	Genome-wide association study of smoking behaviours among Bangladeshi adults.	Smoking initiation	754 Bangladeshi ancestry never smoker males, 2,565 Bangladeshi ancestry never smoker females, 1,837 Bangladeshi ancestry ever smoker males, 198 Bangladeshi ancestry ever smoker females	NA	9q22.32	NR	rs8190560-?		2E-6	(females)			Illumina [1211988] (imputed)	N
1340	chr9	99018083	99018084	rs2479824	32758111	He M	2020-08-06	J Dent Res	Genome-wide Analyses Identify a Novel Risk Locus for Nonsyndromic Cleft Palate.	Nonsyndromic cleft palate	994 Han Chinese ancestry cases, 2,963 Han Chinese ancestry controls	1,095 Han Chinese ancestry cases, 6,352 Han Chinese ancestry controls	9q22.32	NR	rs2479824-?	NR	5E-6		0.83	NR	Illumina [750091]	N
1340	chr9	99023720	99023721	rs189789585	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	CAG-873 sp001701165 abundance in stool	5,959 Finnish ancestry individuals	NA	9q22.32		rs189789585-T	0.0364698	4E-8		0.283452	[0.18-0.38] unit increase	Illumina [7980478] (imputed)	N
1340	chr9	99029288	99029289	rs7042315	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	9q22.32	NR	rs7042315-?	NR	6E-8	(Latino)	1.4753	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1340	chr9	99084792	99084793	rs111821073	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	9q22.32		rs111821073-T	0.1567	2E-10		0.0124	[0.0087-0.0161] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1340	chr9	99086061	99086062	rs6479248	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	9q22.32	SLC35D2	rs6479248-T	NR	3E-12		0.0217259	[0.016-0.028] unit increase	Affymetrix [323123] (imputed)	N
1340	chr9	99087089	99087090	rs142980456	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	9q22.32	SLC35D2	rs142980456-C	0.034031	2E-11		0.04093981	[0.029-0.053] unit increase	Affymetrix [93095623] (imputed)	N
1340	chr9	99087089	99087090	rs142980456	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	9q22.32		rs142980456-?	NR	2E-13				NR [~ 8900000] (imputed)	N
1340	chr9	99087216	99087217	rs58088508	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Platelet count	108,208 Japanese ancestry individuals	NA	9q22.32	SLC35D2	rs58088508-?	NR	4E-12		0.02927	[0.021-0.038] unit increase novel	Illumina [6108953] (imputed)	N
1340	chr9	99087795	99087796	rs12375999	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	9q22.32		rs12375999-T	0.1587	4E-11	(conditional-joint)	0.0128	[0.0091-0.0165] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1340	chr9	99090173	99090173	rs149672562	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Proheparin-binding EGF-like growth factor levels	21,758 European ancestry individuals	9,173 individuals	9q22.32		rs149672562-G	0.76	1E-7		0.056	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1340	chr9	99090173	99090173	rs149672562	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Platelet-derived growth factor subunit B levels	21,758 European ancestry individuals	9,173 individuals	9q22.32		rs149672562-G	0.76	4E-6		0.0486	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1341	chr9	99091008	99091009	rs10990535	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	9q22.32		rs10990535-T	NR	3E-73		0.0381	[0.034-0.042] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1341	chr9	99091008	99091009	rs10990535	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	9q22.32	NR	rs10990535-T	0.236448	1E-106		0.047194	[0.043-0.051] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1341	chr9	99091008	99091009	rs10990535	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	9q22.32	SLC35D2	rs10990535-T	0.2362	3E-13		0.03113785	[0.023-0.039] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1341	chr9	99095222	99095223	rs10990570	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	9q22.32	NR	rs10990570-?	NR	2E-6		4.731	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1341	chr9	99095693	99095694	rs10820383	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	9q22.32		rs10820383-C	0.765	3E-24				Affymetrix [10369434] (imputed)	N
1341	chr9	99097526	99097527	rs6479272	23144319	Lee Y	2012-11-08	Carcinogenesis	Prognostic implications of genetic variants in advanced non-small cell lung cancer: a genome-wide association study.	Non-small cell lung cancer	348 Korean ancestry cases	NA	9q22.32	SLC35D2	rs6479272-T	0.086	9E-6	(Additive model)			Affymetrix [271817]	N
1341	chr9	99097871	99097872	rs4743729	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	9q22.32	SLC35D2	rs4743729-A	NR	9E-10		0.0200669	[0.014-0.026] unit decrease	Affymetrix [323123] (imputed)	N
1341	chr9	99100240	99100241	rs7852321	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	9q22.32	SLC35D2	rs7852321-C	NR	4E-8		0.0187534	[0.012-0.025] unit increase	Affymetrix [323123] (imputed)	N
1341	chr9	99100712	99100713	rs10990610	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	9q22.32	NR	rs10990610-T	0.149105	1E-10		0.05683676	[0.04-0.074] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1341	chr9	99100712	99100713	rs10990610	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	9q22.32	Intergenic	rs10990610-T	0.836	9E-11		0.025	[0.017-0.033] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
1341	chr9	99109278	99109279	rs10820411	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	9q22.32	NR	rs10820411-?	NR	2E-15				Affymetrix [~ 8270000] (imputed)	N
1341	chr9	99111383	99111384	rs10123368	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	9q22.32	SLC35D2	rs10123368-T	0.8045	5E-9	(EA)	0.026	[0.017-0.035] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1341	chr9	99111383	99111384	rs10123368	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	9q22.32	SLC35D2	rs10123368-T	0.8045	2E-8	(EA,men)	0.036	[0.023-0.049] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1341	chr9	99125312	99125313	rs74699469	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q22.32	NR	rs74699469-C	0.0271678	7E-11				Affymetrix, Illumina [21126107] (imputed)	N
1341	chr9	99125314	99125315	rs76756213	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	9q22.32	NR	rs76756213-G	0.034544	2E-10		0.03164	[0.022-0.041] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
1341	chr9	99125314	99125315	rs76756213	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	9q22.32	NR	rs76756213-G	0.034233	3E-16		0.043277	[0.033-0.054] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
1341	chr9	99127062	99127063	rs6479286	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	9q22.32		rs6479286-G	0.842	2E-13				Affymetrix [10369434] (imputed)	N
1341	chr9	99131015	99131017	rs34787105	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	9q22.32	SLC35D2	rs34787105-C	0.037216	1E-9		0.0356671	[0.024-0.047] unit increase	Affymetrix [93095623] (imputed)	N
1341	chr9	99132043	99132044	rs10820447	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine with aura	5,118 European ancestry cases, 74,239 European ancestry controls	NA	9q22.32	intergenic	rs10820447-T	0.16	6E-6		1.16	[1.09-1.23]	Affymetrix, Illumina [~ 2300000] (imputed)	N
1341	chr9	99144912	99144913	rs7020954	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	9q22.32	SLC35D2	rs7020954-A	0.1927	2E-9		0.0484	[0.033-0.064] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1341	chr9	99161511	99161512	rs2025151	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	9q22.32	ZNF367	rs2025151-G	NR	1E-14		0.0300976	[0.022-0.038] unit increase	Affymetrix [321114] (imputed)	N
1341	chr9	99161511	99161512	rs2025151	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	9q22.32	ZNF367	rs2025151-G	NR	3E-10		0.0223148	[0.015-0.029] unit increase	Affymetrix [321016] (imputed)	N
1341	chr9	99161511	99161512	rs2025151	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	9q22.32	ZNF367	rs2025151-G	NR	1E-19		0.0351589	[0.028-0.043] unit increase	Affymetrix [323123] (imputed)	N
1341	chr9	99161511	99161512	rs2025151	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	9q22.32	NR	rs2025151-?	NR	1E-7		0.03644781	[0.023-0.05] unit increase	Illumina [34656550] (imputed)	N
1341	chr9	99161511	99161512	rs2025151	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	9q22.32	ZNF367	rs2025151-G	0.18	2E-12		1.22	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
1341	chr9	99164783	99164784	rs73536951	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q22.32	NR	rs73536951-C	0.0262007	5E-15				Affymetrix, Illumina [20825802] (imputed)	N
1341	chr9	99167091	99167092	rs34409187	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	9q22.32	NR	rs34409187-T	0.032602	6E-11		0.036791	[0.026-0.048] SD unit increase	Affymetrix, Illumina [50282193] (imputed)	N
1341	chr9	99169418	99169419	rs10990975	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	9q22.32	Intergenic	rs10990975-T	0.8279	3E-15	(MTAG)	0.0137	[0.01-0.017] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1341	chr9	99176391	99176392	rs36004171	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	9q22.32		rs36004171-T	NR	2E-9		0.0403	[0.027-0.053] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
1341	chr9	99190440	99190440	rs781438112	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	9q22.32		rs781438112-CTT	0.161112	2E-16		0.025428575	[0.019-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
1341	chr9	99192918	99192919	rs10820606	34553764	Little A	2021-09-06	Hum Mol Genet	Whole genome sequence analysis of platelet traits in the NHLBI trans-omics for precision medicine initiative.	Platelet count	14,392 African American individuals, 13,985 Hispanic or Latin American individuals, 32,129 European ancestry individuals, 681 East Asian ancestry individuals, 13 individuals	10,664 individuals, 10,694 African American individuals, 7,287 Hispanic or Latin American individuals, 7,857 African ancestry individuals	9q22.32		rs10820606-C	0.227851	2E-12		3.1722937	[2.29-4.05] unit increase	NR [NR]	N
1341	chr9	99192918	99192919	rs10820606	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	9q22.32		rs10820606-A	0.771	3E-45				Affymetrix [10369434] (imputed)	N
1341	chr9	99192918	99192919	rs10820606	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	9q22.32		rs10820606-C	0.229028	1E-50		0.040519822	[0.035-0.046] unit increase	Affymetrix [93095623] (imputed)	N
1341	chr9	99192918	99192919	rs10820606	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	9q22.32		rs10820606-C	0.229032	1E-101		0.05834093	[0.053-0.064] unit decrease	Affymetrix [93095623] (imputed)	N
1341	chr9	99192918	99192919	rs10820606	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	9q22.32		rs10820606-C	0.229023	4E-78		0.050594747	[0.045-0.056] unit increase	Affymetrix [93095623] (imputed)	N
1341	chr9	99192918	99192919	rs10820606	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	9q22.32		rs10820606-C	0.228999	6E-34		0.03303461	[0.028-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
1341	chr9	99192918	99192919	rs10820606	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q22.32	NR	rs10820606-C	0.290596	8E-123				Affymetrix, Illumina [24588908] (imputed)	N
1341	chr9	99192918	99192919	rs10820606	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	145,648 East Asian ancestry individuals	NA	9q22.32	NR	rs10820606-A	0.489137	1E-20		0.038595	[0.03-0.047] SD units decrease	Affymetrix, Illumina [16710488] (imputed)	N
1341	chr9	99192918	99192919	rs10820606	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q22.32	NR	rs10820606-C	0.229524	2E-45				Affymetrix, Illumina [17210439] (imputed)	N
1341	chr9	99192918	99192919	rs10820606	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	9q22.32	NR	rs10820606-C	0.229965	7E-48		0.03482	[0.03-0.04] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
1341	chr9	99192918	99192919	rs10820606	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	9q22.32	intergenic	rs10820606-C	0.2334	1E-21		0.04198657	[0.033-0.051] unit increase	Affymetrix [~ 2500000] (imputed)	N
1341	chr9	99192918	99192919	rs10820606	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	9q22.32	intergenic	rs10820606-C	0.2334	1E-39		0.05681534	[0.048-0.065] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1341	chr9	99192918	99192919	rs10820606	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	9q22.32	intergenic	rs10820606-C	0.2333	4E-30		0.0498871	[0.041-0.058] unit increase	Affymetrix [~ 2500000] (imputed)	N
1341	chr9	99196093	99196094	rs10820614	27798624	Eppinga RN	2016-10-31	Nat Genet	Identification of genomic loci associated with resting heart rate and shared genetic predictors with all-cause mortality.	Resting heart rate	127,919 European ancestry individuals, 2,478 Asian ancestry individuals, 1,734 Black individuals, 684 Mixed ancestry individuals, 1,436 individuals	130,795 European ancestry individuals	9q22.32	ZNF367	rs10820614-C	0.21	6E-6		0.1854	[0.11-0.27] unit decrease	Affymetrix [19941912] (imputed)	N
1341	chr9	99201584	99201585	rs7870753	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	9q22.32	NR	rs7870753-?	NR	2E-7		0.03589288	[0.022-0.049] unit increase	Illumina [34656550] (imputed)	N
1341	chr9	99201584	99201585	rs7870753	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	9q22.32	HABP4	rs7870753-A	0.777	4E-33		0.043	[0.035-0.051] unit decrease	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
1341	chr9	99212377	99212378	rs1885426	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	9q22.32	HABP4	rs1885426-T	NR	2E-8		0.0178195	[0.012-0.024] unit increase	Affymetrix [321114] (imputed)	N
1341	chr9	99212377	99212378	rs1885426	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	9q22.32	HABP4	rs1885426-T	NR	9E-10		0.0176234	[0.012-0.023] unit increase	Affymetrix [321016] (imputed)	N
1341	chr9	99212377	99212378	rs1885426	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	9q22.32	HABP4	rs1885426-T	NR	5E-10		0.0195161	[0.013-0.026] unit increase	Affymetrix [323123] (imputed)	N
1342	chr9	99224745	99224746	rs10761022	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	9q22.32		rs10761022-T	NR	8E-10		0.0177	[0.012-0.023] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
1342	chr9	99239840	99239841	rs6477489	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	9q22.32	HABP4	rs6477489-A	0.7793	5E-59		0.0369	[0.032-0.041] unit decrease	Affymetrix [18391927] (imputed)	N
1342	chr9	99239840	99239841	rs6477489	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9q22.32		rs6477489-?	NR	4E-118				NR [~ 8900000] (imputed)	N
1342	chr9	99252463	99252464	rs1057687	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	9q22.32	HABP4	rs1057687-G	0.1889	1E-11		0.01732329	[0.012-0.022] unit increase	Affymetrix [up to 18485882] (imputed)	N
1342	chr9	99252463	99252464	rs1057687	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	9q22.32	NR	rs1057687-A	NR	2E-8		5.61	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1342	chr9	99253081	99253082	rs6477493	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	9q22.32	Intergenic	rs6477493-T	0.189	4E-15	(MTAG)	0.018	[0.013-0.023] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1342	chr9	99253081	99253082	rs6477493	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	9q22.32	Intergenic	rs6477493-C	0.811	7E-10		0.0153	[0.01-0.02] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1342	chr9	99253081	99253082	rs6477493	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	9q22.32	CDC14B	rs6477493-T	NR	2E-9		0.022816595	[0.015-0.03] unit increase	Affymetrix [NR]	N
1342	chr9	99253081	99253082	rs6477493	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability (MTAG)	436,124 European ancestry individuals	NA	9q22.32	CDC14B	rs6477493-?	NR	4E-9		5.88	z score increase	Affymetrix, Illumina, Perlegen [7333576] (imputed)	N
1342	chr9	99253081	99253082	rs6477493	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability	107,207 European ancestry individuals	NA	9q22.32	CDC14B	rs6477493-?	NR	2E-6		4.712	z score increase	Affymetrix, Illumina [7357080] (imputed)	N
1342	chr9	99254439	99254440	rs7867618	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	9q22.32	Intergenic	rs7867618-A	0.8149	1E-17	(MTAG)	0.0182	[0.014-0.022] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1342	chr9	99254439	99254440	rs7867618	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	9q22.32	Intergenic	rs7867618-A	0.8108	4E-16	(MTAG)	0.0238	[0.018-0.029] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1342	chr9	99256411	99256412	rs6477496	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income	286,301 British ancestry individuals	NA	9q22.32	CDC14B	rs6477496-T	NR	3E-8		0.011258	[0.0073-0.0152] unit increase	Affymetrix [18485882] (imputed)	N
1342	chr9	99259250	99259251	rs10761086	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	9q22.32	CDC14B	rs10761086-T	NR	1E-13		0.0290035	[0.021-0.037] unit increase	Affymetrix [323123] (imputed)	N
1342	chr9	99259250	99259251	rs10761086	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	9q22.32	NR	rs10761086-T	0.193207	2E-11		0.083596	[0.059-0.108] unit increase	Affymetrix [21375087] (imputed)	N
1342	chr9	99259250	99259251	rs10761086	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	9q22.32	NR	rs10761086-?	NR	9E-6		4.451	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1342	chr9	99259568	99259582	rs141760764	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	9q22.32	HABP4, CDC14B	rs141760764-?	NR	4E-14		0.052950423	[0.039-0.067] unit increase	Illumina [27896057] (imputed)	N
1342	chr9	99267552	99267553	rs10820741	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	9q22.33	Intergenic	rs10820741-T	0.8156	2E-10		0.0187	[0.013-0.024] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1342	chr9	99268420	99268421	rs10119967	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	9q22.33	CDC14B	rs10119967-A	0.799167	4E-8	(236 ms)	0.0353895	[0.022-0.049] unit increase	Affymetrix [10000000] (imputed)	N
1342	chr9	99273129	99273130	rs151200247	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	9q22.33		rs151200247-T	0.018673	2E-6		0.11759	[0.069-0.166] unit increase	Affymetrix [15580782] (imputed)	N
1342	chr9	99282268	99282269	rs10820757	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	9q22.33	CDC14B	rs10820757-C	NR	6E-12		0.0270743	[0.019-0.035] unit increase	Affymetrix [321114] (imputed)	N
1342	chr9	99288950	99288951	rs16911097	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	9q22.33		rs16911097-G	0.539634	5E-18		0.0286597	[0.022-0.035] unit increase	Illumina [13478928] (imputed)	N
1342	chr9	99346569	99346570	rs7042473	30972912	Wei L	2019-04-10	J Viral Hepat	Genetic variation in FCER1A predicts peginterferon alfa-2a-induced hepatitis B surface antigen clearance in East Asian patients with chronic hepatitis B.	Peginterferon alfa-2a treatment response in chronic hepatitis B infection	up to 1,108 East Asian cases, up to 465 European ancestry cases, up to 63 cases	NA	9q22.33	CDC14B, CDC14C	rs7042473-?		5E-6	(endpoint 4, dominant)	1.71	[NR]	Illumina [> 750000]	N
1343	chr9	99388623	99388624	rs10121511	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9q22.33		rs10121511-?	NR	2E-12				NR [~ 8900000] (imputed)	N
1343	chr9	99401390	99401391	rs116844364	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	9q22.33		rs116844364-A	0.01902	2E-6		0.11647	[0.068-0.165] unit increase	Affymetrix [15580782] (imputed)	N
1343	chr9	99425676	99425677	rs576132061	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	9q22.33		rs576132061-C	0.117766	3E-11		0.024244223	[0.017-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
1344	chr9	99539137	99539138	rs10816533	19030899	Lei SF	2008-11-23	Hum Genet	Genome-wide association scan for stature in Chinese: evidence for ethnic specific loci.	Height	618 Chinese ancestry individuals	2,953 Chinese ancestry individuals	9q22.33	ZNP510	rs10816533-C	0.29	2E-6				Affymetrix [281533]	N
1344	chr9	99586239	99586240	rs143004587	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	9q22.33		rs143004587-T	0.019354	1E-6		0.11756	[0.07-0.165] unit increase	Affymetrix [15580782] (imputed)	N
1346	chr9	99768852	99768853	rs551499109	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	9q22.33		rs551499109-C	0.018622	2E-6		0.11779	[0.069-0.166] unit increase	Affymetrix [15580782] (imputed)	N
1346	chr9	99776023	99776024	rs188738880	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	9q22.33	MFSD14C	rs188738880-T	0.9605	7E-19		0.0446	[0.035-0.054] unit decrease	Affymetrix [18391927] (imputed)	N
1346	chr9	99841322	99841323	rs7863880	28322283	Chibnik LB	2017-03-21	Mol Psychiatry	Susceptibility to neurofibrillary tangles: role of the PTPRD locus and limited pleiotropy with other neuropathologies.	Dementia with Lewy bodies	195 European ancestry cases, 714 European ancestry controls	369 individuals	9q22.33		rs7863880-T	0.66	2E-7	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1347	chr9	99904456	99904457	rs2374916	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	9q22.33	NR	rs2374916-?	NR	1E-37				Affymetrix [NR]	N
1347	chr9	99906464	99906465	rs117724680	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CTSV	5,362 Icelandic ancestry individuals	NA	9q22.33		rs117724680-C	0.04924	8E-12		0.296401	[0.21-0.38] unit increase	Illumina [7506463] (imputed)	N
1349	chr9	100176615	100176616	rs148123055	31006051	Kharazmi M	2019-04-20	Calcif Tissue Int	A Genome-Wide Association Study of Bisphosphonate-Associated Atypical Femoral Fracture.	Bisphosphonate-associated atypical femoral fracture	50 European ancestry cases, 1 Chilean ancestry case, 4,891 European ancestry controls	NA	9q22.33	TDRD7	rs148123055-G	0.014	2E-6		6.626	[3.044-14.42]	Illumina [7585874] (imputed)	N
1349	chr9	100193000	100193001	rs13301794	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	9q22.33	TDRD7	rs13301794-?		5E-8				Affymetrix, Illumina [NR] (imputed)	N
1349	chr9	100232787	100232788	rs116973630	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-hip ratio	1,254 whole genome sequenced European ancestry individuals, 3,071 whole genome sequenced individuals, 29,723 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,053 Mylopotamos (founder/genetic isolate) individuals, 879 Pomak (founder/genetic isolate) individuals	206,053 European ancestry individuals	9q22.33	TDRD7	rs116973630-A	0.99	6E-6		0.235	[0.13-0.34] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1350	chr9	100273496	100273497	rs139475366	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cerebral amyloid deposition in APOEe4 non-carriers (PET imaging)	370 European and other ancestry APOEe4 non-carriers	NA	9q22.33	TMOD1	rs139475366-G	0.0027	1E-7		0.3995	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
1350	chr9	100275423	100275424	rs1052270	30823506	Hong EP	2019-02-25	J Clin Med	Genomic Variations in Susceptibility to Intracranial Aneurysm in the Korean Population.	Intracranial aneurysm	250 Korean ancestry cases, 296 Korean ancestry controls	NA	9q22.33	TMOD1	rs1052270-C	0.5800000000000001	3E-8		2.4390244	[1.79-3.33]	Affymetrix [508192]	N
1350	chr9	100304530	100304531	rs10982622	34187846	Ong JS	2021-06-29	Gut	Multitrait genetic association analysis identifies 50 new risk loci for gastro-oesophageal reflux, seven new loci for Barrett's oesophagus and provides insights into clinical heterogeneity in reflux diagnosis.	Barrett's esophagus	13,358 European ancestry cases, 43,071 European ancestry controls	24,099 cases, 1,484,025 controls	9q22.33	NR	rs10982622-A	0.54	9E-9		0.088	unit increase	NR [2324712] (imputed)	N
1350	chr9	100304530	100304531	rs10982622	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	9q22.33		rs10982622-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1350	chr9	100304812	100304813	rs67177022	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	9q22.33		rs67177022-T	0.40042	3E-6		0.032603	[0.019-0.046] unit increase	Affymetrix [15580782] (imputed)	N
1350	chr9	100310500	100310501	rs7852462	27527254	Gharahkhani P	2016-08-12	Lancet Oncol	Genome-wide association studies in oesophageal adenocarcinoma and Barrett's oesophagus: a large-scale meta-analysis.	Barrett's esophagus  or Esophageal adenocarcinoma	6,167 European ancestry Barrett's oesophagus cases, 4,112 European ancestry esophageal adenocarcinoma cases, 17,159 European ancestry controls	NA	9q22.33	TMOD1	rs7852462-C		2E-8		1.12	[1.08-1.16]	Illumina [11951684] (imputed)	N
1350	chr9	100310500	100310501	rs7852462	27527254	Gharahkhani P	2016-08-12	Lancet Oncol	Genome-wide association studies in oesophageal adenocarcinoma and Barrett's oesophagus: a large-scale meta-analysis.	Barrett's esophagus	6,167 European ancestry cases, 17,159 European ancestry controls	NA	9q22.33	TMOD1	rs7852462-C		4E-9		1.1466575	[1.10-1.19]	Illumina [11942825] (imputed)	N
1350	chr9	100316229	100316230	rs1475545	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	9q22.33	TMOD1	rs1475545-A	0.394	5E-6	(Urinary free dopamine )	0.03	[NR] nmol/d increase	Illumina [899892]	N
1350	chr9	100333670	100333671	rs1475543	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	9q22.33	NR	rs1475543-C	0.827048	1E-8		0.00586291	[0.0037-0.008] unit increase	Affymetrix [16582909] (imputed)	N
1350	chr9	100333670	100333671	rs1475543	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	9q22.33	NR	rs1475543-C	0.827048	6E-7		0.0054604	[0.003-0.0079] unit increase	Affymetrix [16582965] (imputed)	N
1350	chr9	100333910	100333911	rs117803380	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Unilateral cleft lip and palate	205 Asian ancestry cases, 315 European ancestry cases, 692 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	9q22.33	NR	rs117803380-?	NR	1E-7		2.7	[2.44-2.99]	Illumina [539000] (imputed)	N
1350	chr9	100343211	100343212	rs56237852	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	9q22.33	NR	rs56237852-C	0.826083	1E-8		0.00849029	[0.0055-0.0115] unit increase	Affymetrix [16582621] (imputed)	N
1350	chr9	100343211	100343212	rs56237852	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	9q22.33	NR	rs56237852-C	0.826083	6E-6		0.00748353	[0.0043-0.0107] unit increase	Affymetrix [16582614] (imputed)	N
1351	chr9	100506413	100506414	rs7862400	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	9q22.33		rs7862400-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1351	chr9	100511330	100511331	rs16924016	24571439	Nudel R	2014-02-26	Genes Brain Behav	Genome-wide association analyses of child genotype effects and parent-of-origin effects in specific language impairment.	Parent of origin effect on language impairment (paternal)	153 European ancestry case-parent trios, 54 European ancestry case-mother duos, 12 European ancestry case-father duos, 18 European ancestry cases	NA	9q22.33	KRT18P13, FOXE1	rs16924016-?		5E-6				Illumina [614937]	N
1352	chr9	100535202	100535203	rs7030256	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Goiter	2,711 European ancestry cases, 456,942 European ancestry controls, 1,127 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	9q22.33		rs7030256-G	NR	5E-37		0.3824	[0.32-0.44] unit increase	Affymetrix, Illumina [25841617] (imputed)	N
1352	chr9	100535266	100535267	rs7030280	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hypothyroidism	30,155 European ancestry cases, 379,986 European ancestry controls, 1,114 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	9q22.33		rs7030280-T	NR	1E-82		0.2075	[0.19-0.23] unit increase	Affymetrix, Illumina [25801083] (imputed)	N
1352	chr9	100535266	100535267	rs7030280	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hashimoto thyroiditis	15,654 European ancestry cases, 379,986 European ancestry controls, 537 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	9q22.33		rs7030280-T	NR	6E-31		0.2051	[0.17-0.24] unit increase	Affymetrix, Illumina [25797652] (imputed)	N
1352	chr9	100535266	100535267	rs7030280	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Thyroid cancer	762 European ancestry cases, 410,350 European ancestry controls	NA	9q22.33		rs7030280-C	NR	5E-28		1.7654	NR	Affymetrix [7846216] (imputed)	N
1352	chr9	100537801	100537802	rs1588635	33527407	Truong T	2021-02-02	Int J Cancer	Multiethnic genome-wide association study of differentiated thyroid cancer in the EPITHYR consortium.	Differentiated thyroid cancer	1,554 European ancestry cases, 1,973 European ancestry controls	2,229 European ancestry cases, 2,059 European ancestry controls	9q22.33	NR	rs1588635-C	0.55	2E-21		0.61	[0.55-0.68]	Illumina [9673063] (imputed)	N
1352	chr9	100537801	100537802	rs1588635	28195142	Gudmundsson J	2017-02-14	Nat Commun	A genome-wide association study yields five novel thyroid cancer risk loci.	Thyroid cancer	2,637 European ancestry cases, 364 non-array typed, familial imputed Icelandic ancestry cases, 134,811 European ancestry controls, 152,739 non-array typed, familial imputed Icelandic ancestry controls.	NA	9q22.33	NR	rs1588635-A	0.396	2E-58		1.69	1.59-1.82	Illumina [7100000] (imputed)	N
1352	chr9	100539517	100539518	rs112817873	25743335	Taylor PN	2015-03-06	Nat Commun	Whole-genome sequence-based analysis of thyroid function.	Thyroid stimulating hormone levels	2,287 European ancestry whole-genome sequenced individuals, 14,048 European ancestry individuals	NA	9q22.33	FOXE1	rs112817873-T	0.323	6E-20		0.14	[0.11-0.17] unit decrease	Illumina [at least 9558836] (imputed)	N
1352	chr9	100542175	100542176	rs10759927	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Hypothyroidism	17,558 European ancestry cases, 117,083 European ancestry controls	NA	9q22.33	FOXE1, XPA	rs10759927-?	NR	1E-89		1.313	[1.278-1.349]	Illumina [13676411] (imputed)	N
1352	chr9	100544867	100544868	rs7847663	28333968	Nielsen TR	2017-03-23	PLoS One	A genome-wide association study of thyroid stimulating hormone and free thyroxine in Danish children and adolescents.	Plasma thyroid-stimulating hormone levels	1,680 Danish ancestry children and adolescents	2,129 Danish ancestry children and adolescents	9q22.33	FOXE1	rs7847663-T	0.698	2E-20		0.223	[0.18-0.27] unit increase	Illumina [8508717] (imputed)	N
1352	chr9	100546390	100546391	rs925488	32769997	Zhou W	2020-08-07	Nat Commun	GWAS of thyroid stimulating hormone highlights pleiotropic effects and inverse association with thyroid cancer.	Thyroid stimulating hormone levels	119,715 European ancestry individuals	NA	9q22.33	PTCSC2	rs925488-A	0.659736684131548	5E-34		0.0583	[0.049-0.068] SD increase	Illumina [22400000] (imputed)	N
1352	chr9	100546390	100546391	rs925488	30367059	Teumer A	2018-10-26	Nat Commun	Genome-wide analyses identify a role for SLC17A4 and AADAT in thyroid hormone regulation.	Hyperthyroidism	1,840 European ancestry cases, 49,983 European ancestry controls	NA	9q22.33	FOXE1	rs925488-A	0.65	1E-8		0.19	[0.13-0.25] unit increase	Affymetrix, Illumina [5965951] (imputed)	N
1352	chr9	100546599	100546600	rs925489	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Thyroid cancer	1,054 European ancestry cases, 490,920 European ancestry controls, 361 East Asian ancestry cases, 178,362 East Asian ancestry controls	NA	9q22.33		rs925489-T	NR	9E-35		0.5586	[0.47-0.65] unit decrease	Affymetrix, Illumina [25845394] (imputed)	N
1352	chr9	100546599	100546600	rs925489	32581359	Saevarsdottir S	2020-06-24	Nature	FLT3 stop mutation increases FLT3 ligand level and risk of autoimmune thyroid disease.	Autoimmune thyroid disease	30,234 European ancestry cases, 724,172 European ancestry controls	NA	9q22.33	FOXE1	rs925489-T	0.674	9E-110		1.25	[NR]	Affymetrix, Illumina [42900000] (imputed)	N
1352	chr9	100546599	100546600	rs925489	30104761	Zhou W	2018-08-13	Nat Genet	Efficiently controlling for case-control imbalance and sample relatedness in large-scale genetic association studies.	Thyroid cancer	358 European ancestry cases, 407,399 European ancestry controls	NA	9q22.33	PTCSC2	rs925489-T	0.332	5E-11				Affymetrix [28000000] (imputed)	N
1352	chr9	100546599	100546600	rs925489	24852370	Zhan M	2014-05-22	Hum Mol Genet	Genome-wide association study identifies a novel susceptibility gene for serum TSH levels in Chinese populations.	Serum thyroid-stimulating hormone levels	1,346 Han Chinese ancestry individuals	3,235 She Chinese ancestry individuals	9q22.33	XPA, FOXE1	rs925489-C	0.109	1E-13		0.058	[NR] unit decrease	Illumina [8503852] (imputed)	N
1352	chr9	100546599	100546600	rs925489	22493691	Eriksson N	2012-04-06	PLoS One	Novel associations for hypothyroidism include known autoimmune risk loci.	Hypothyroidism	3,736 European ancestry cases, 35,546 European ancestry controls	NA	9q22.33	KRT18P13, FOXE1, C9orf156	rs925489-T	0.668	2E-19		1.28	[1.22-1.35]	Illumina [870065]	N
1352	chr9	100548143	100548144	rs7032019	30367059	Teumer A	2018-10-26	Nat Commun	Genome-wide analyses identify a role for SLC17A4 and AADAT in thyroid hormone regulation.	Hypothyroidism	3,340 European ancestry cases, 49,983 European ancestry controls	NA	9q22.33	FOXE1	rs7032019-A	0.66	6E-20		0.248	[0.2-0.3] unit increase	Affymetrix, Illumina [5965951] (imputed)	N
1352	chr9	100549012	100549013	rs7850258	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	9q22.33		rs7850258-G	NR	6E-95		0.1966	[0.18-0.22] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1352	chr9	100549012	100549013	rs7850258	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	9q22.33	RP11-23B15.1	rs7850258-A	0.331608	8E-91		0.1955236	[0.18-0.21] unit decrease	Affymetrix [7288503] (imputed)	N
1352	chr9	100549012	100549013	rs7850258	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	9q22.33		rs7850258-?	NR	2E-100				NR [~ 8900000] (imputed)	N
1352	chr9	100549012	100549013	rs7850258	21981779	Denny JC	2011-10-07	Am J Hum Genet	Variants near FOXE1 are associated with hypothyroidism and other thyroid conditions: using electronic medical records for genome- and phenome-wide studies.	Hypothyroidism	1,317 European ancestry cases, 5,053 European ancestry controls	263 European ancestry cases, 1,616 European ancestry controls	9q22.33	FOXE1	rs7850258-?	0.65	4E-9	(eMERGE)	1.23	[1.04-1.47]	Illumina [522164]	N
1352	chr9	100549328	100549329	rs189720575	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial squamous cell lung carcinoma	367 European ancestry cases, 31,563 European ancestry controls	NA	9q22.33	NR	rs189720575-A	0.006	6E-7		8.67	[3.70-20.29]	Illumina [7959153] (imputed)	N
1352	chr9	100550027	100550028	rs1443438	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Autoimmune traits	approximately 459,000 European ancestry individuals	NA	9q22.33		rs1443438-?	NR	1E-39				NR [~ 8900000] (imputed)	N
1352	chr9	100550027	100550028	rs1443438	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	9q22.33	XPA, FOXE1	rs1443438-A	0.253	1E-9	(TSH )	0.04	[NR] uIU/mL increase	Illumina [899892]	N
1352	chr9	100556108	100556109	rs965513	25855579	Mancikova V	2015-04-22	Int J Cancer	Thyroid cancer GWAS identifies 10q26.12 and 6q14.1 as novel susceptibility loci and reveals genetic heterogeneity among populations.	Thyroid cancer	398 European ancestry cases , 502 European ancestry controls	1,422 European ancestry cases, 1,908 European ancestry controls	9q22.33	FOXE-1	rs965513-A	0.34	3E-23		1.65	[1.49-1.82]	Affymetrix [474624]	N
1352	chr9	100556108	100556109	rs965513	23894154	Kohler A	2013-07-26	J Clin Endocrinol Metab	Genome-wide association study on differentiated thyroid cancer.	Thyroid cancer	690 European ancestry cases, 497 European ancestry controls	2,958 European ancestry cases, 3,727 European ancestry controls	9q22.33	FOXE1	rs965513-A	NR	3E-10		1.78	[NR]	Illumina [572042]	N
1352	chr9	100556108	100556109	rs965513	20350937	Takahashi M	2010-03-29	Hum Mol Genet	The FOXE1 locus is a major genetic determinant for radiation-related thyroid carcinoma in Chernobyl.	Thyroid cancer (Papillary, radiation-related)	401 European ancestry cases, 620 European ancestry controls	259 cases, 648 controls	9q22.33	TMOD1, C9orf97, NCBP1, XPA, HEMGN, KRT18P13, FOXE1, C9orf156	rs965513-A	NR	5E-12		1.65	[1.43-1.91]	Illumina [506840]	N
1352	chr9	100556108	100556109	rs965513	19198613	Gudmundsson J	2009-02-06	Nat Genet	Common variants on 9q22.33 and 14q13.3 predispose to thyroid cancer in European populations.	Thyroid cancer	192 European ancestry cases, 37,196 European ancestry controls	432 European ancestry cases, 1,727 European ancestry controls	9q22.33	FOXE1	rs965513-A	0.34	2E-27		1.75	[1.59-1.94]	Illumina [304083]	N
1352	chr9	100556971	100556972	rs10759944	25436638	Malinowski JR	2014-12-01	PLoS One	Genetic variants associated with serum thyroid stimulating hormone (TSH) levels in European Americans and African Americans from the eMERGE Network.	Serum thyroid-stimulating hormone levels	4,501 European ancestry individuals, 351 African American individuals	NA	9q22.33	FOXE1	rs10759944-A	0.33	1E-6	(EA)	0.05	[0.03-0.07] unit decrease	Illumina [up to 905285]	N
1352	chr9	100591462	100591463	rs7045138	23408906	Porcu E	2013-02-07	PLoS Genet	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 14,459 European ancestry females, up to 10,936 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males	NA	9q22.33	FOXE1	rs7045138-T	0.553	5E-7	(FT4-Males)	0.105	[0.064-0.146] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1352	chr9	100591462	100591463	rs7045138	23408906	Porcu E	2013-02-07	PLoS Genet	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 14,459 European ancestry females, up to 10,936 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males	NA	9q22.33	FOXE1	rs7045138-T	0.553	3E-6	(FT4-Females)	0.093	[0.054-0.132] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1352	chr9	100591462	100591463	rs7045138	23408906	Porcu E	2013-02-07	PLoS Genet	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 14,459 European ancestry females, up to 10,936 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males	NA	9q22.33	FOXE1	rs7045138-T	0.553	2E-11	(FT4)	0.098	[0.069-0.127] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1352	chr9	100608681	100608682	rs12348691	25608926	Betz RC	2015-01-22	Nat Commun	Genome-wide meta-analysis in alopecia areata resolves HLA associations and reveals two new susceptibility loci.	Alopecia areata	2,332 European ancestry cases and 5,233 European ancestry controls	764 European ancestry cases and 2,256 European ancestry controls	9q22.33	FOXE1, C9orf156, HEMGN, ANP32B, NANS	rs12348691-G	NR	9E-7		1.1840065		Illumina [1233578] (imputed)	N
1352	chr9	100609229	100609230	rs7873389	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	9q22.33	FOXE1	rs7873389-?	NR	3E-19		1.0743446	NR	Affymetrix [9154080] (imputed)	N
1352	chr9	100610758	100610759	rs7851660	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Strep throat	52,487 European ancestry cases, 22,017 European ancestry controls	NA	9q22.33	NR	rs7851660-?	NR	4E-6		0.0257	[0.015-0.037] unit decrease	Illumina [at least 560000] (imputed)	N
1352	chr9	100619718	100619719	rs12347191	34242216	Ray D	2021-07-09	PLoS Genet	Pleiotropy method reveals genetic overlap between orofacial clefts at multiple novel loci from GWAS of multi-ethnic trios.	Cleft lip with or without cleft palate or cleft palate (pleiotropy)	300 Asian ancestry cleft lip trios, 299 European ancestry cleft lip trios, 89 Latin American cleft lip trios, 6 cleft lip trios, 875 Asian ancestry cleft lip with cleft palate trios, 679 European ancestry cleft lip with cleft palate trios, 508 Latin American cleft lip with cleft palate trios, 15 cleft lip with cleft palate trios, 273 Asian ancestry cleft palate trios, 296 European ancestry cleft palate trios, 28 Latin American cleft palate trios, 14 cleft palate trios	NA	9q22.33		rs12347191-C	0.25	2E-7				Illumina [6761961] (imputed)	N
1352	chr9	100619718	100619719	rs12347191	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	9q22.33		rs12347191-?	NR	2E-29				NR [~ 8900000] (imputed)	N
1352	chr9	100619718	100619719	rs12347191	28054174	Leslie EJ	2017-01-04	Hum Genet	Genome-wide meta-analyses of nonsyndromic orofacial clefts identify novel associations between FOXE1 and all orofacial clefts, and TP63 and cleft lip with or without cleft palate.	Orofacial clefts	83 Asian ancestry cases, 1,445 Asian ancestry case-parent trios, 161 Asian ancestry controls, 208 European ancestry cases, 1,284 European ancestry case-parent trios, 835 European ancestry controls, 610 Latino or African cases, 663 Latino or African case-parent trios, 704 Latino or African controls, 35 case-parent trios.	NA	9q22.33	FOXE1	rs12347191-?	NR	1E-9		1.2820514	[1.14-1.45] (GENEVA cohort)	Illumina [6090031] (imputed)	N
1352	chr9	100628267	100628268	rs10122541	25855579	Mancikova V	2015-04-22	Int J Cancer	Thyroid cancer GWAS identifies 10q26.12 and 6q14.1 as novel susceptibility loci and reveals genetic heterogeneity among populations.	Thyroid cancer	398 European ancestry cases , 502 European ancestry controls	1,422 European ancestry cases, 1,908 European ancestry controls	9q22.33	FOXE1	rs10122541-G	0.33	1E-17		1.54	[1.40-1.70]	Affymetrix [474624]	N
1352	chr9	100631819	100631820	rs12378800	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	9q22.33	FOXE1	rs12378800-A	NR	2E-7	(between families)	5.218	unit increase	Affymetrix [up to 15107142] (imputed)	N
1352	chr9	100641771	100641776	rs138322543	33137956	Yang Y	2020-10-29	Genes (Basel)	Secondary Genome-Wide Association Study Using Novel Analytical Strategies Disentangle Genetic Components of Cleft Lip and/or Cleft Palate in 1q32.2.	Orofacial clefts	160 African ancestry cases, 584 Asian ancestry cases, 1,068 European ancestry cases, 37 Native American ancestry cases, 849 admixed ancestry cases, 5 cases, 219 African ancestry controls, 1,433 Asian ancestry controls, 3,563 European ancestry controls, 152 Native American ancestry controls, 2,420 admixed ancestry controls, 52 controls	NA	9q22.33	TRMO	rs138322543-?	NR	5E-6	(conditional on rs72728755, rs7552, rs2235370, rs16957821, rs12600562, rs12543318, rs3845903, rs10778143 and rs6929507)	0.03	[0.016-0.044] unit increase	Illumina [at least 589945] (imputed)	N
1352	chr9	100648286	100648287	rs12002967	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Thyroid cancer	762 European ancestry cases, 410,350 European ancestry controls	NA	9q22.33		rs12002967-C	NR	3E-7		1.5614	NR	Affymetrix [7846216] (imputed)	N
1352	chr9	100649532	100649533	rs17346310	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	9q22.33	NR	rs17346310-C	0.242354	7E-10		0.0222628	[0.015-0.029] unit increase	NR [19129689] (imputed)	N
1352	chr9	100658317	100658318	rs7037324	25855579	Mancikova V	2015-04-22	Int J Cancer	Thyroid cancer GWAS identifies 10q26.12 and 6q14.1 as novel susceptibility loci and reveals genetic heterogeneity among populations.	Thyroid cancer	398 European ancestry cases , 502 European ancestry controls	1,422 European ancestry cases, 1,908 European ancestry controls	9q22.33	FOXE1	rs7037324-A	0.34	1E-17		1.54	[1.39-1.70]	Affymetrix [474624]	N
1352	chr9	100660745	100660746	rs72753537	28703219	Son HY	2017-07-13	Nat Commun	Genome-wide association and expression quantitative trait loci studies identify multiple susceptibility loci for thyroid cancer.	Papillary thyroid cancer	410 Korean ancestry cases, 8,279 Korean ancestry controls	587 Korean ancestry cases, 605 Korean ancestry controls	9q22.33	FOXE1	rs72753537-C	0.07	5E-7		1.48	[NR]	Affymetrix, Illumina [3593389] (imputed)	N
1352	chr9	100660745	100660746	rs72753537	28703219	Son HY	2017-07-13	Nat Commun	Genome-wide association and expression quantitative trait loci studies identify multiple susceptibility loci for thyroid cancer.	Differentiated thyroid cancer	470 Korean ancestry cases, 8,279 Korean ancestry controls	615 Korean ancestry cases, 605 Korean ancestry controls	9q22.33	FOXE1	rs72753537-C	0.07	8E-6		1.41	[NR]	Affymetrix, Illumina [3593389] (imputed)	N
1353	chr9	100667598	100667599	rs1561961	34524976	Nolan J	2021-09-01	Eur J Endocrinol	Genome-wide analysis of thyroid function in Australian adolescents highlights SERPINA7 and NCOA3.	Thyroid stimulating hormone levels	2,832 European ancestry individuals	1,104 European ancestry individuals	9q22.33		rs1561961-T	0.3693	2E-9		0.0492	mU/L decrease	Illumina [7522526] (imputed)	N
1353	chr9	100669798	100669799	rs1561958	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9q22.33		rs1561958-?	NR	7E-16				NR [~ 8900000] (imputed)	N
1353	chr9	100670801	100670802	rs72753548	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q22.33	NR	rs72753548-C	0.740177	1E-10				Affymetrix, Illumina [17210439] (imputed)	N
1353	chr9	100677133	100677134	rs3780419	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	9q22.33	NR	rs3780419-T	0.734559	4E-12		0.015105	[0.011-0.019] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1353	chr9	100677882	100677883	rs7028759	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	9q22.33	NR	rs7028759-T	NR	2E-6	(GEE model)	0.67689	[0.4-0.96] unit increase	NR [NR] (imputed)	N
1353	chr9	100679835	100679836	rs7864655	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	9q22.33		rs7864655-G	NR	9E-9		0.0134	[0.0089-0.0179] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
1353	chr9	100686128	100686129	rs3808894	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	9q22.33	C9orf156	rs3808894-G	0.361228	5E-41		0.031537652	[0.027-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
1353	chr9	100696202	100696203	rs755109	19197348	Lowe JK	2009-02-06	PLoS Genet	Genome-wide association studies in an isolated founder population from the Pacific Island of Kosrae.	Quantitative traits	2,906 Kosraen individuals	NA	9q22.33	HEMGN, C9ORF156	rs755109-C	0.23	1E-6	(TSH)	0.31	[NR] mIU/L decrease	Affymetrix [408775]	N
1353	chr9	100700653	100700654	rs3758253	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	9q22.33	HEMGN	rs3758253-T	0.3633	1E-22		0.03717625	[0.03-0.045] unit increase	Affymetrix [~ 2500000] (imputed)	N
1353	chr9	100700653	100700654	rs3758253	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	9q22.33	HEMGN	rs3758253-T	0.3633	2E-18		0.03270401	[0.025-0.04] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1353	chr9	100707991	100707992	rs10984466	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	9q22.33	HEMGN	rs10984466-G	0.3633	2E-23		0.03777431	[0.03-0.045] unit increase	Affymetrix [~ 2500000] (imputed)	N
1353	chr9	100713600	100713601	rs114266868	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	9q22.33		rs114266868-T	0.636	3E-26				Affymetrix [10369434] (imputed)	N
1353	chr9	100715388	100715389	rs10984499	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SERPINE2	5,367 Icelandic ancestry individuals	NA	9q22.33		rs10984499-A	0.3599	2E-12		0.13839	[0.1-0.177] unit increase	Illumina [7506463] (imputed)	N
1353	chr9	100715388	100715389	rs10984499	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CEL	5,360 Icelandic ancestry individuals	NA	9q22.33		rs10984499-A	0.3599	4E-13		0.142015	[0.1-0.18] unit increase	Illumina [7506463] (imputed)	N
1353	chr9	100715388	100715389	rs10984499	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	9q22.33		rs10984499-A	0.362845	1E-34		0.028622307	[0.024-0.033] unit increase	Affymetrix [93095623] (imputed)	N
1353	chr9	100715388	100715389	rs10984499	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	9q22.33		rs10984499-A	0.362828	2E-38		0.030122777	[0.026-0.035] unit increase	Affymetrix [93095623] (imputed)	N
1353	chr9	100720298	100720299	rs12376113	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	9q22.33	NR	rs12376113-G	0.887903	3E-10		0.018859	[0.013-0.025] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
1353	chr9	100720298	100720299	rs12376113	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	9q22.33		rs12376113-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1353	chr9	100740123	100740124	rs4743150	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	9q22.33		rs4743150-T	NR	3E-42		0.0359	[0.031-0.041] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
1353	chr9	100740123	100740124	rs4743150	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	9q22.33		rs4743150-T	NR	8E-31		0.0304	[0.025-0.035] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
1353	chr9	100740123	100740124	rs4743150	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	9q22.33		rs4743150-T	0.220485	3E-24		0.027404465	[0.022-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
1353	chr9	100740123	100740124	rs4743150	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	9q22.33		rs4743150-?	NR	4E-33				NR [~ 8900000] (imputed)	N
1353	chr9	100740123	100740124	rs4743150	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	9q22.33	ANP32B	rs4743150-T	0.2227	4E-6		0.0355	[0.02-0.051] unit decrease	NR [8041861] (imputed)	N
1353	chr9	100740123	100740124	rs4743150	21378988	Coronary Artery Disease (C4D) Genetics Consortium	2011-03-06	Nat Genet	A genome-wide association study in Europeans and South Asians identifies five new loci for coronary artery disease.	Coronary heart disease	8,424 European ancestry cases, 7,268 European ancestry controls, 6,996 South Asian ancestry cases, 7,794 South Asian ancestry controls	18,049 European ancestry cases, 16,357 European ancestry controls, 3,359 South Asian ancestry cases, 2,828 South Asian ancestry controls	9q22.33	intergenic	rs4743150-?	NR	5E-6				Illumina [574919]	N
1353	chr9	100741912	100741912	rs11390003	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	8,021 European ancestry cases, 16,489 European ancestry controls	NA	9q22.33		rs11390003-GA	NR	3E-8		0.149172	[0.097-0.202] unit decrease	NR [5054572] (imputed)	N
1353	chr9	100742252	100742253	rs7855088	25436638	Malinowski JR	2014-12-01	PLoS One	Genetic variants associated with serum thyroid stimulating hormone (TSH) levels in European Americans and African Americans from the eMERGE Network.	Serum thyroid-stimulating hormone levels	4,501 European ancestry individuals, 351 African American individuals	NA	9q22.33	ANP32B	rs7855088-C	0.44	6E-6	(EA)	0.05	[0.03-0.07] unit decrease	Illumina [up to 905285]	N
1353	chr9	100746855	100746855	rs144894688	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	9q22.33		rs144894688-G	0.78	2E-33		0.16	[0.13-0.19] % increase	Affymetrix [NR] (imputed)	N
1353	chr9	100746855	100746855	rs144894688	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	9q22.33	ANP32B	rs144894688-GCA	0.220583	5E-28		0.029178835	[0.024-0.034] unit increase	Affymetrix [93095623] (imputed)	N
1353	chr9	100753122	100753123	rs4743151	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q22.33	NR	rs4743151-G	0.197365	2E-41				Affymetrix, Illumina [20825802] (imputed)	N
1353	chr9	100753408	100753408	rs566405365	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	9q22.33	ANP32B	rs566405365-CT	0.209417	2E-51		0.0423196	[0.037-0.047] unit decrease	Affymetrix [93095623] (imputed)	N
1353	chr9	100753408	100753408	rs566405365	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	9q22.33	ANP32B	rs566405365-CT	0.209436	3E-35		0.03432688	[0.029-0.04] unit decrease	Affymetrix [93095623] (imputed)	N
1353	chr9	100753408	100753408	rs566405365	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	9q22.33	NR	rs566405365-I	0.208779	1E-43		0.03482	[0.03-0.04] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
1353	chr9	100763454	100763455	rs112500293	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	9q22.33		rs112500293-T	NR	3E-8		0.0119	[0.0078-0.016] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
1353	chr9	100763454	100763455	rs112500293	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	8,021 European ancestry cases, 16,489 European ancestry controls, 2,495 East Asian ancestry cases, 4,283 East Asian ancestry controls	NA	9q22.33		rs112500293-T	NR	8E-9		0.149507	[0.099-0.2] unit decrease	NR [2787054] (imputed)	N
1353	chr9	100763454	100763455	rs112500293	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	9q22.33	ANP32B	rs112500293-T	0.217684	7E-12		0.018393826	[0.013-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1353	chr9	100763454	100763455	rs112500293	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	9q22.33	NR	rs112500293-T	0.217417	3E-10		0.015637	[0.011-0.021] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
1353	chr9	100763456	100763457	rs11338569	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	9q22.33	ANP32B	rs11338569-C	0.2194	9E-11		0.02785787	[0.019-0.036] unit increase	Affymetrix [~ 2500000] (imputed)	N
1353	chr9	100763456	100763457	rs11338569	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	9q22.33	ANP32B	rs11338569-C	0.2194	8E-14		0.03195319	[0.024-0.04] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1353	chr9	100771439	100771440	rs76917914	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	9q22.33	NR	rs76917914-G	0.219579	5E-35		0.027534	[0.023-0.032] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
1353	chr9	100771439	100771440	rs76917914	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q22.33	NR	rs76917914-G	0.200841	1E-68				Affymetrix, Illumina [24246363] (imputed)	N
1353	chr9	100771439	100771440	rs76917914	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	9q22.33	ANP32B	rs76917914-G	0.22	1E-11		0.0291362	[0.021-0.038] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1353	chr9	100780789	100780790	rs4742711	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	9q22.33		rs4742711-A	NR	8E-24		0.023	[0.018-0.028] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
1353	chr9	100782694	100782695	rs874610	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q22.33	NR	rs874610-T	0.196585	9E-36				Affymetrix, Illumina [24332387] (imputed)	N
1353	chr9	100790546	100790547	rs6478522	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	9q22.33	NR	rs6478522-A	0.21992	4E-66		0.037699	[0.033-0.042] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1353	chr9	100793175	100793176	rs7019033	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	9q22.33	RNU6-918P	rs7019033-A	0.2196	6E-19		0.03818137	[0.03-0.047] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1353	chr9	100793706	100793707	rs12001675	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	9q22.33	RNU6-918P	rs12001675-A	0.220476	7E-93		0.055179544	[0.05-0.06] unit decrease	Affymetrix [93095623] (imputed)	N
1353	chr9	100793706	100793707	rs12001675	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	9q22.33	RNU6-918P	rs12001675-A	0.220281	3E-97		0.05697762	[0.052-0.062] unit decrease	Affymetrix [93095623] (imputed)	N
1353	chr9	100793706	100793707	rs12001675	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	9q22.33		rs12001675-?	NR	8E-45				NR [~ 8900000] (imputed)	N
1354	chr9	100809134	100809135	rs72755439	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	9q22.33	NANS	rs72755439-C	0.711449	3E-9		0.0127875	[0.0086-0.017] unit decrease	Affymetrix [NR] (imputed)	N
1354	chr9	100809134	100809135	rs72755439	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	9q22.33	NANS	rs72755439-C	0.711508	4E-8		0.0121414	[0.0078-0.0165] unit decrease	Affymetrix [NR] (imputed)	N
1354	chr9	100868188	100868189	rs7855251	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	9q22.33	TRIM14	rs7855251-T	NR	1E-10		1.0774	NR	Affymetrix, Illumina [8278136] (imputed)	N
1354	chr9	100900781	100900782	rs4743170	34424336	Mobuchon L	2021-08-23	J Natl Cancer Inst	Different Pigmentation Risk Loci for High-Risk Monosomy 3 and Low-Risk Disomy 3 Uveal Melanomas.	Uveal melanoma	1,142 European ancestry cases, 882 European ancestry controls	NA	9q22.33		rs4743170-G	NR	4E-6		1.47	[1.25-1.73]	Illumina [7488175] (imputed)	N
1354	chr9	100907482	100907483	rs73655199	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Pulse pressure x alcohol consumption interaction (2df test)	91,099 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	238,053 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,447 Hispanic ancestry drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic ancestry non-drinkers	9q22.33	CORO2A, GABBR2	rs73655199-A	0.01	1E-9	(AA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1355	chr9	100927631	100927632	rs10491723	30972912	Wei L	2019-04-10	J Viral Hepat	Genetic variation in FCER1A predicts peginterferon alfa-2a-induced hepatitis B surface antigen clearance in East Asian patients with chronic hepatitis B.	Peginterferon alfa-2a treatment response in chronic hepatitis B infection	up to 1,108 East Asian cases, up to 465 European ancestry cases, up to 63 cases	NA	9q22.33	CORO2A	rs10491723-?		5E-6	(endpoint 6, additive)	2.11	[NR]	Illumina [> 750000]	N
1355	chr9	100967560	100967561	rs10985425	31711042	Li X	2019-11-11	Aging (Albany NY)	Genome-wide association study identifies SIAH3 locus influencing the rate of ventricular enlargement in non-demented elders.	Rate of ventricular enlargement	507 European ancestry individuals	NA	9q22.33	TBC1D2	rs10985425-G	0.05	4E-6		0.018	NR unit increase	Illumina [1231747]	N
1355	chr9	100969749	100969750	rs12339152	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		TBC1D2	rs12339152-?	NR	1E-8	(male)	2.35454	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1355	chr9	100983825	100983826	rs7866350	26114229	Ashley-Koch AE	2015-06-12	J Affect Disord	Genome-wide association study of posttraumatic stress disorder in a cohort of Iraq-Afghanistan era veterans.	Post-traumatic stress disorder	949 non-Hispanic black individuals, 759 European ancestry individuals	NA	9q22.33	TBC1D2	rs7866350-?	NR	1E-6	EA	2.27	[NR]	Illumina [up to 5616481] (imputed)	N
1355	chr9	101009611	101009612	rs34334323	26379185	Garcia-Etxebarria K	2015-09-17	PLoS One	No Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity.	Severe influenza A (H1N1) infection	49 European ancestry severe cases, 549 European ancestry population controls	NA	9q22.33	TBC1D2	rs34334323-?	0.0	4E-8				Affymetrix [547296]	N
1355	chr9	101036177	101036178	rs6478637	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	9q22.33	NR	rs6478637-A	0.298	5E-8		0.00654328	[0.0042-0.0089] unit increase	NR [9732723] (imputed)	N
1356	chr9	101071521	101071522	rs3824451	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	9q22.33	GABBR2	rs3824451-C	NR	3E-6	(EA)	1.0733069	[1.04-1.1]	Illumina [6627481] (imputed)	N
1356	chr9	101071521	101071522	rs3824451	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	9q22.33	GABBR2	rs3824451-C	NR	2E-7		1.066098	[1.04-1.09]	Illumina [6627481] (imputed)	N
1356	chr9	101071521	101071522	rs3824451	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	9q22.33	intergenic	rs3824451-C	NR	2E-6		1.0604454	[1.04-1.08]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1356	chr9	101076626	101076627	rs16914811	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	9q22.33	NR	rs16914811-A	NR	6E-7		1.08	[NR]	Illumina [7158791] (imputed)	N
1356	chr9	101092315	101092316	rs16914931	25089948	Theusch E	2014-10-01	Pharmacogenet Genomics	Ancestry and other genetic associations with plasma PCSK9 response to simvastatin.	Response to simvastatin treatment (PCSK9 protein level change)	562 European ancestry individuals	287 African American individuals	9q22.33	GABBR2	rs16914931-A	0.121	1E-6	(EA)	0.198	[NR] unit increase	Illumina [570422]	N
1356	chr9	101123335	101123336	rs10986018	19744961	Hazra A	2009-09-10	Hum Mol Genet	Genome-wide significant predictors of metabolites in the one-carbon metabolism pathway.	Folate pathway vitamin levels	3,305 European ancestry females, 1,458 European ancestry males	NA	9q22.33	GPR51	rs10986018-?	0.22	2E-8	(plasma homocysteine)	0.06	[0.040-0.080] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1356	chr9	101163262	101163263	rs10122943	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	9q22.33	NR	rs10122943-?	NR	3E-8				Affymetrix [NR]	N
1357	chr9	101214020	101214021	rs11793304	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	9q22.33	TBC1D2	rs11793304-?	NR	6E-6	(TAG 54:3)	0.1732837	[0.098-0.248] unit increase	Affymetrix [at least 2500000] (imputed)	N
1357	chr9	101214020	101214021	rs11793304	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	9q22.33	TBC1D2	rs11793304-?	NR	2E-6	(TAG 54:4)	0.18277115	[0.11-0.26] unit increase	Affymetrix [at least 2500000] (imputed)	N
1357	chr9	101215982	101215983	rs3824497	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	9q22.33	NR	rs3824497-A	NR	4E-6	(GEE model)	0.72886	[0.42-1.04] unit decrease	NR [NR] (imputed)	N
1357	chr9	101253225	101253226	rs2779551	23726511	Xie P	2013-05-28	Biol Psychiatry	Genome-wide association study identifies new susceptibility loci for posttraumatic stress disorder.	Post-traumatic stress disorder (asjusted for relatedness)	up to 308 European ancestry cases, up to 1,538 European ancestry controls, up to 456 African American cases, up to 2,936 African American controls	NA	9q22.33	GABBR2	rs2779551-?	NR	2E-6	(Whole cohort; EA)			Illumina [up to 871502]	N
1357	chr9	101298154	101298155	rs7857537	27980656	Justice AE	2016-10-18	BMC Proc	Genome-wide association of trajectories of systolic blood pressure change.	Systolic blood pressure change trajectory	up to 683 Mexican American individuals from 20 families	NA	9q22.33	GABBR2	rs7857537-C		5E-7	(Trajectory class 5)	0.89	[0.56-1.22] unit increase	Illumina [at least 472049] (imputed)	N
1358	chr9	101324653	101324654	rs75210337	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Alcohol consumption x traumatic event in childhood (felt hated by family member) interaction	46,394 European ancestry individuals	NA	9q22.33		rs75210337-?	NR	3E-8		1.7424	[1.13-2.36] unit increase	Affymetrix [NR] (imputed)	N
1358	chr9	101341850	101341851	rs73494486	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Ovarian cancer (MTAG)	647 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	9q22.33	Intergenic	rs73494486-?		7E-6		1.05	[1.03-1.07]	Illumina [7645193] (imputed)	N
1358	chr9	101341850	101341851	rs73494486	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Gynecologic disease (multivariate analysis)	up to 7,975 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	9q22.33	GABBR2	rs73494486-?		5E-8	(uterine fibroid, ovarian cancer)			Illumina [7645193] (imputed)	N
1358	chr9	101344339	101344340	rs2779527	33610756	Gao H	2021-02-18	Mitochondrion	A Genome-Wide Association Study in Human Lymphoblastoid Cells Supports Safety of Mitochondrial Complex I Inhibitor.	tricyclic pyrone compound response (IC50)	36 African American lymphoblastoid cell lines, 84 European ancestry lymphoblastoid cell lines, 76 Han Chinese ancestry lymphoblastoid cell lines	NA	9q22.33	GABBR2	rs2779527-?	NR	4E-6				Affymetrix, Illumina [1184972]	N
1358	chr9	101396174	101396175	rs6478789	31586183	Niazi Y	2019-10-04	Mutagenesis	Distinct pathways associated with chromosomal aberration frequency in a cohort exposed to genotoxic compounds compared to general population.	High chromosomal aberration frequency (chromatid type)	345 European and unknown ancestry genotoxic compound-exposed cases, 262 European and unknown ancestry genotoxic compound-exposed controls,  333 European and unknown ancestry unexposed cases, 533 European and unknown ancestry unexposed controls	NA	9q22.33	GABBR2	rs6478789-?	NR	2E-6		1.6666665	[NR]	Illumina [> 2600000] (imputed)	N
1358	chr9	101447962	101447963	rs337527	30166627	Massey J	2018-08-31	Pharmacogenomics J	Genome-wide association study of response to tumour necrosis factor inhibitor therapy in rheumatoid arthritis.	Response to TNF inhibitor in rheumatoid arthritis (change in tender 28-joint count)	551 European ancestry individuals treated with adalimumab, 619 European ancestry individuals treated with etanercept, 434 European ancestry individuals treated with infliximab, 119 European ancestry individuals treated with other TNF inhibitors	NA	9q22.33	GABBR2	rs337527-?		7E-8	(Adalimumab)	0.98	[0.63-1.33] unit decrease	Affymetrix, Illumina [9814288] (imputed)	N
1359	chr9	101518441	101518442	rs580809	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	9q22.33	ANKS6	rs580809-T	0.75	3E-8		0.014	[0.01-0.018] unit decrease	Illumina [6108953] (imputed)	N
1360	chr9	101589642	101589643	rs10987872	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris heterochromicity	329 South Asian ancestry individuals		9q22.33	RP11-341G5.1	rs10987872-C	0.534	5E-6		0.352	[0.2-0.5] unit decrease	Illumina [640625] (imputed)	N
1360	chr9	101593824	101593825	rs2295926	34069769	Al-Sarraj Y	2021-05-18	Genes (Basel)	Family-Based Genome-Wide Association Study of Autism Spectrum Disorder in Middle Eastern Families.	Autism spectrum disorder	487 Middle Eastern ancestry individuals from 171 families	NA	9q22.33	GABBR2, ANKS6, GALNT12	rs2295926-G	0.295	3E-6		0.9	[0.84-0.95]	Illumina [516320]	N
1360	chr9	101593824	101593825	rs2295926	33585033	Hayashi S	2021-01-29	Biomed Rep	A genome-wide association study identifying the SNPs predictive of rapid joint destruction in patients with rheumatoid arthritis.	joint destruction in rheumatoid arthritis (rapid vs slow)	32 Japanese ancestry rapid joint destruction individuals, 208 Japanese ancestry slow joint destruction individuals	NA	9q22.33	GALNT12	rs2295926-?	NR	8E-8			NR	Illumina [up to 317503]	N
1360	chr9	101593824	101593825	rs2295926	33585033	Hayashi S	2021-01-29	Biomed Rep	A genome-wide association study identifying the SNPs predictive of rapid joint destruction in patients with rheumatoid arthritis.	joint destruction in rheumatoid arthritis (rapid vs slow)	30 Japanese ancestry rapid joint destruction individuals, 198 Japanese ancestry slow joint destruction individuals	NA	9q22.33	GALNT12	rs2295926-?	NR	6E-8			NR	Illumina [up to 317503]	N
1360	chr9	101601837	101601838	rs57156513	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	9q22.33	GALNT12	rs57156513-A	0.0253443444730077	2E-6	(G_Coprococcus_HB)	1.07247	[0.63-1.52] unit decrease	Illumina [7711310] (imputed)	N
1360	chr9	101625376	101625377	rs10987993	31005965	Coltell O	2019-04-21	Am J Clin Nutr	Association between taste perception and adiposity in overweight or obese older subjects with metabolic syndrome and identification of novel taste-related genes.	Taste perception (total score including phenylthiocarbamide) in obesity with metabolic syndrome	369 individuals	NA	9q22.33	ENSG00000267026	rs10987993-C	0.162	6E-6		2.47	[1.42-3.52] unit decrease	Illumina [622468]	N
1360	chr9	101628951	101628952	rs4576476	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	9q22.33	NR	rs4576476-?	NR	1E-8	(right isthmus cingulate)			NR [9227495] (imputed)	N
1360	chr9	101632853	101632854	rs57649467	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	9q22.33	GALNT12	rs57649467-A	0.3885	6E-7		0.0129	[0.0078-0.018] unit increase	Affymetrix [19819130] (imputed)	N
1360	chr9	101632853	101632854	rs57649467	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	9q22.33	GALNT12	rs57649467-A	0.3885	5E-13		0.0178	[0.013-0.023] unit increase	Affymetrix [19819130] (imputed)	N
1360	chr9	101632853	101632854	rs57649467	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	9q22.33	GALNT12	rs57649467-A	0.3885	6E-8		0.0131	[0.0084-0.0178] unit increase	Affymetrix [19819130] (imputed)	N
1360	chr9	101633311	101633312	rs7856182	33593824	Wang YN	2021-02-16	J Am Soc Nephrol	Interaction between <i>G</i> <i>ALNT12</i> and <i>C1GALT1</i> Associates with Galactose-Deficient IgA1 and IgA Nephropathy.	Serum galactose-deficient IgA1 levels in IgA nephropathy	849 Han Chinese ancestry individuals	313 Han Chinese ancestry individuals	9q22.33	GALNT12	rs7856182-T	0.04	2E-9		0.73	unit increase	Illumina [5737162] (imputed)	N
1360	chr9	101637476	101637477	rs911934	33723403	Sha Z	2021-03-15	Nat Hum Behav	The genetic architecture of structural left-right asymmetry of the human brain.	Left-right brain asymmetry	32,256 European ancestry individuals	NA	9q22.33	GALNT12	rs911934-G	0.7	2E-15				NR [9312144] (imputed)	N
1360	chr9	101639208	101639209	rs10819413	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein COL15A1	5,364 Icelandic ancestry individuals	NA	9q22.33		rs10819413-T	0.394	8E-17		0.151918	[0.12-0.19] unit decrease	Illumina [7506463] (imputed)	N
1360	chr9	101639826	101639827	rs7023465	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	8,072 individuals	NA	9q22.33		rs7023465-T	0.32	1E-6				NR [13131314] (imputed)	N
1360	chr9	101639826	101639827	rs7023465	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	9q22.33		rs7023465-T	0.32	7E-170		27.78	z score increase	Affymetrix [9061022] (imputed)	N
1360	chr9	101639826	101639827	rs7023465	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	9q22.33		rs7023465-T	0.32	3E-52		15.21	z score increase	Affymetrix [9061022] (imputed)	N
1360	chr9	101639826	101639827	rs7023465	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	9q22.33		rs7023465-T	0.32	1E-102		21.51	z score increase	Affymetrix [9061022] (imputed)	N
1360	chr9	101639826	101639827	rs7023465	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	9q22.33	NR	rs7023465-T	0.3004	1E-17				NR [9056863] (imputed)	N
1360	chr9	101639826	101639827	rs7023465	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	9q22.33	NR	rs7023465-T	0.3004	1E-17				NR [9056863] (imputed)	N
1360	chr9	101639826	101639827	rs7023465	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	9q22.33		rs7023465-?	NR	7E-34				NR [9705931] (imputed)	N
1360	chr9	101639826	101639827	rs7023465	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	9q22.33	MAGI1	rs7023465-?		6E-25				NR [7428630] (imputed)	N
1360	chr9	101639826	101639827	rs7023465	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	9q22.33	GALNT12, COL15A1	rs7023465-?		5E-25				NR [7428630] (imputed)	N
1360	chr9	101644537	101644538	rs1407508	25866641	Xu W	2015-03-19	Biomark Res	A genome wide association study on Newfoundland colorectal cancer patients' survival outcomes.	Survival in microsatellite instability low/stable colorectal cancer	431 European ancestry cases	NA	9q22.33	intergenic	rs1407508-?		9E-7	(disease-free survival)	2.53	[1.75-3.66]	Illumina [729737]	N
1360	chr9	101645589	101645590	rs7851057	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	9q22.33	NR	rs7851057-?	NR	6E-10	(right isthmus cingulate)			NR [9227495] (imputed)	N
1360	chr9	101649751	101649752	rs1007892	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	9q22.33	NR	rs1007892-T	0.35	1E-9			[NR]	Affymetrix [9886854] (imputed)	N
1360	chr9	101649751	101649752	rs1007892	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	9q22.33	NR	rs1007892-T	0.35	6E-9		0.93	[0.91-0.95]	Affymetrix [9886854] (imputed)	N
1360	chr9	101649751	101649752	rs1007892	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	9q22.33	NR	rs1007892-T	0.35	1E-9			[NR]	Affymetrix [9886854] (imputed)	N
1360	chr9	101649751	101649752	rs1007892	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in non-current smokers	16,488 European ancestry cases, 169,688 European ancestry controls	NA	9q22.33	NR	rs1007892-T	0.35	5E-9		0.93	[0.91-0.95]	Affymetrix [9886854] (imputed)	N
1360	chr9	101649751	101649752	rs1007892	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in ever smokers	12,446 European ancestry cases, 59,145 European ancestry controls	NA	9q22.33	NR	rs1007892-T	0.35	3E-6		0.93	[0.9-0.96]	Affymetrix [9886854] (imputed)	N
1360	chr9	101652105	101652106	rs1028655	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	9q22.33		rs1028655-?	NR	1E-13				NR [~ 8900000] (imputed)	N
1360	chr9	101661649	101661650	rs10760580	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	9q22.33	COL15A1	rs10760580-G	0.71	1E-10		1.07	[1.05-1.10]	Affymetrix, Illumina [6224355] (imputed)	N
1360	chr9	101679751	101679752	rs34405347	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	9q22.33	NR	rs34405347-T	0.9002	3E-8		1.09	[1.05-1.12]	Affymetrix, Illumina [16900397] (imputed)	N
1361	chr9	101738187	101738188	rs10819542	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	9q22.33	COL15A1	rs10819542-A	0.6336	2E-12		0.0139	[0.01-0.0178] unit increase	Affymetrix [18391927] (imputed)	N
1361	chr9	101739708	101739709	rs10988442	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	9q22.33	COL15A1	rs10988442-A	0.6186	1E-23		0.1783	[0.14-0.21] unit increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1361	chr9	101741968	101741969	rs7027650	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	9q22.33		rs7027650-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1361	chr9	101742442	101742443	rs11343445	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	9q22.33		rs11343445-C	NR	2E-12		0.0156	[0.011-0.02] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
1361	chr9	101743335	101743336	rs989393	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9q22.33		rs989393-?	NR	5E-24				NR [~ 8900000] (imputed)	N
1361	chr9	101748355	101748356	rs2075663	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	9q22.33		rs2075663-A	0.6203	4E-8		0.12574574	[0.081-0.171] mmHg increase	Affymetrix, Illumina [242865] (imputed)	N
1361	chr9	101748355	101748356	rs2075663	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	9q22.33		rs2075663-A	0.6205	1E-24		0.16453008	[0.13-0.2] mmHg increase	Affymetrix, Illumina [242866] (imputed)	N
1361	chr9	101749942	101749943	rs2075665	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	9q22.33		rs2075665-T	NR	4E-19		0.0119	[0.0094-0.0144] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1361	chr9	101749942	101749943	rs2075665	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	9q22.33	COL15A1	rs2075665-T	NR	2E-9		0.0176289	[0.012-0.023] unit decrease	Affymetrix [319769] (imputed)	N
1361	chr9	101749942	101749943	rs2075665	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	9q22.33	COL15A1	rs2075665-T	NR	2E-10		0.0186546	[0.013-0.024] unit decrease	Affymetrix [319769] (imputed)	N
1361	chr9	101749942	101749943	rs2075665	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	9q22.33	COL15A1	rs2075665-T	NR	8E-12		0.0201222	[0.014-0.026] unit decrease	Affymetrix [321114] (imputed)	N
1361	chr9	101749942	101749943	rs2075665	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	9q22.33	NR	rs2075665-?	NR	3E-13				Affymetrix [~ 8270000] (imputed)	N
1361	chr9	101749942	101749943	rs2075665	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	9q22.33	COL15A1	rs2075665-A	0.6078	9E-18		0.1672	[0.13-0.21] mmHg increase	Affymetrix [NR] (imputed)	N
1361	chr9	101749942	101749943	rs2075665	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	9q22.33	NR	rs2075665-A	0.6245	1E-9		0.0112	[0.0077-0.0147] unit increase	NR [~ 27400000] (imputed)	N
1361	chr9	101761240	101761241	rs1413299	25134534	Chen K	2014-08-19	Nat Commun	Genome-wide association study identifies new susceptibility loci for epithelial ovarian cancer in Han Chinese women.	Epithelial ovarian cancer	1,044 Han Chinese ancestry cases, 1,172 Han Chinese ancestry controls	1,452 Han Chinese ancestry cases, 2,803 Han Chinese ancestry controls	9q22.33	TGFBR1, COL15A1	rs1413299-C	0.38	2E-8		1.2	[1.03-1.41]	Illumina [710714]	N
1361	chr9	101761966	101761967	rs60048592	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	9q22.33	NR	rs60048592-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
1361	chr9	101767381	101767382	rs41316954	32742401	Parviainen R	2020-06-12	Exp Ther Med	A single genetic locus associated with pediatric fractures: A genome-wide association study on 3,230 patients.	Fractures (paediatric)	48 European ancestry cases, 3,182 European ancestry controls	NA	9q22.33	COL15A1, TGFBR1	rs41316954-T	0.089	1E-6		1.809	[1.07-2.54] unit increase	Illumina [3515000] (imputed)	N
1361	chr9	101767384	101767385	rs41305481	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q22.33	COL15A1	rs41305481-G	0.302	2E-19	(Collagen alpha-1(XV) chain, COL15A1.8974.172.3)	0.24	[0.18-0.3] unit increase	Affymetrix [10572788] (imputed)	N
1361	chr9	101767983	101767984	rs12380469	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein COL15A1	5,364 Icelandic ancestry individuals	NA	9q22.33		rs12380469-A	0.1139	2E-18		0.251323	[0.19-0.31] unit increase	Illumina [7506463] (imputed)	N
1361	chr9	101771182	101771183	rs11515536	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	9q22.33	NR	rs11515536-T	0.13061599999999995	2E-8		0.00676726	[0.0043-0.0092] unit increase	Affymetrix [16582909] (imputed)	N
1361	chr9	101771182	101771183	rs11515536	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	9q22.33	NR	rs11515536-T	0.13061599999999995	5E-6		0.00625459	[0.0035-0.009] unit increase	Affymetrix [16582965] (imputed)	N
1361	chr9	101771182	101771183	rs11515536	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	9q22.33	COL15A1	rs11515536-T	0.1244	8E-7		0.0516	[0.031-0.072] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1361	chr9	101771773	101771774	rs12379014	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	9q22.33	COL15A1	rs12379014-C	NR	6E-10		0.0262157	[0.018-0.035] unit decrease	Affymetrix [321114] (imputed)	N
1361	chr9	101776520	101776521	rs7032060	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	9q22.33	COL15A1	rs7032060-T	NR	1E-9		0.0210281	[0.014-0.028] unit decrease	Affymetrix [321114] (imputed)	N
1361	chr9	101779823	101779824	rs4743309	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota alpha diversity (Shannon index)	1,068 Japanese ancestry individuals	NA	9q22.33	COL15A1	rs4743309-T	0.43	4E-7	(male)	0.205	[0.13-0.28] unit decrease	Illumina [6380737] (imputed)	N
1361	chr9	101782534	101782535	rs4743310	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (unclassified genus belonging to the order Clostridiales)	1,068 Japanese ancestry individuals	NA	9q22.33	COL15A1	rs4743310-C	0.38	8E-6	(male)	0.19	[0.11-0.27] unit decrease	Illumina [6380737] (imputed)	N
1361	chr9	101785597	101785598	rs7861925	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	9q22.33	COL15A1	rs7861925-G	0.8890625	2E-14	(COL15A1, 8974_172_3)	0.2893483	[0.22-0.36] unit decrease	Illumina [> 1000000] (imputed)	N
1361	chr9	101790877	101790878	rs4743311	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	9q22.33	NR	rs4743311-G	0.2533	2E-8		1.04	[1.026-1.054]	Affymetrix [15688218] (imputed)	N
1361	chr9	101807294	101807295	rs77060722	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Lateral ventricle temporal horn volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	9q22.33	COL15A1	rs77060722-?		2E-6				Illumina [4322238] (imputed)	N
1361	chr9	101815338	101815339	rs16918167	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	9q22.33		rs16918167-?	NR	5E-10				NR [~ 8900000] (imputed)	N
1361	chr9	101829541	101829542	rs1537504	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	9q22.33	COL15A1	rs1537504-A	0.23	1E-11				NR [> 9500000] (imputed)	N
1362	chr9	101878621	101878622	rs10760673	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	9q22.33	TGFBR1	rs10760673-A	0.2274	2E-9		5.986	[NR] z score decrease	Affymetrix, Illumina [~ 11000000] (imputed)	N
1362	chr9	101883807	101883808	rs1571590	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	9q22.33	TGFBR1	rs1571590-?		7E-25				Affymetrix, Illumina [NR] (imputed)	N
1362	chr9	101893025	101893026	rs118096318	28084903	Hallberg P	2017-01-13	Pharmacogenomics	Genetic variants associated with angiotensin-converting enzyme inhibitor-induced cough: a genome-wide association study in a Swedish population.	Cough in response to angiotensin-converting enzyme inhibitor drugs	123 European ancestry cases, 1,345 European and unknown ancestry controls, 1 Middle Eastern ancestry case	NR	9q22.33	TGFBR1	rs118096318-?	NR	2E-6		5.06	[2.61-9.8]	Illumina [8600000] (imputed)	N
1362	chr9	101908364	101908365	rs334353	23455636	Fritsche LG	2013-03-03	Nat Genet	Seven new loci associated with age-related macular degeneration.	Age-related macular degeneration	6,713 European ancestry cases, 48,402 European ancestry contols, 110 Southern Indian ancestry cases, 119 Southern Indian ancestry controls, 827 Japanese ancestry cases, 3,323 Japanese ancestry controls	9,070 European ancestry cases, 7,683 European ancestry contols, 461 East Asian ancestry cases, 547 East Asian ancestry controls	9q22.33	TGFBR1	rs334353-T	0.73	3E-11		1.13	[1.10-1.17]	Affymetrix, Illumina [2442884] (imputed)	N
1362	chr9	101908914	101908915	rs334354	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Myopia (age of diagnosis)	104,293 European ancestry individuals	NA	9q22.33	NR	rs334354-A	0.1988	3E-9		0.0515	[0.034-0.069] unit decrease	Illumina [~ 10600000] (imputed)	N
1362	chr9	101915886	101915887	rs41283642	31959851	Olafsdottir TA	2020-01-20	Nat Commun	Eighty-eight variants highlight the role of T cell regulation and airway remodeling in asthma pathogenesis.	Asthma	16,247 European ancestry cases, 346,486 European ancestry controls, 52,942 cases, 355,713 controls	NA	9q22.33	TGFBR1, ALG2, SEC61B, COL15A1, NAMA, GALNT12	rs41283642-C	0.96631	2E-10		1.1251758	[1.09-1.16]	Affymetrix [32463443] (imputed)	N
1362	chr9	101915886	101915887	rs41283642	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Respiratory diseases	approximately 459,000 European ancestry individuals	NA	9q22.33		rs41283642-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1362	chr9	101923371	101923372	rs1626340	26691988	Fritsche LG	2015-12-21	Nat Genet	A large genome-wide association study of age-related macular degeneration highlights contributions of rare and common variants.	Advanced age-related macular degeneration	16,144 European ancestry cases, 17,832 European ancestry controls	473 Asian ancestry cases, 1,099 Asian ancestry controls, 52 African ancestry cases, 361 African ancestry cases, 254 other non-European ancestry cases, 694 other non-European ancestry controls	9q22.33	TGFBR1, COL15A1	rs1626340-?	NR	4E-10	(EA)	1.1363636		Illumina [12023830] (imputed)	N
1362	chr9	101930248	101930249	rs44466	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9q22.33		rs44466-?	NR	6E-11				NR [~ 8900000] (imputed)	N
1362	chr9	101932851	101932851	rs200491113	34103634	Valette K	2021-06-08	Commun Biol	Prioritization of candidate causal genes for asthma in susceptibility loci derived from UK Biobank.	Asthma	56,167 White-British ancestry cases, 352,255 White-British ancestry controls	NA	9q22.33	TGFBR1, ALG2	rs200491113-GTAGA	0.0320409609015555	6E-12		0.12877756	[0.092-0.166] unit decrease	Affymetrix [35186738] (imputed)	N
1362	chr9	101932851	101932851	rs200491113	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	9q22.33	TGFBR1	rs200491113-G	0.969438	1E-13		1.1388404	[1.10039461791397-1.17862955581483]	NR [9572556] (imputed)	N
1363	chr9	101989705	101989706	rs150707349	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	9q22.33	NR	rs150707349-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
1363	chr9	102018147	102018148	rs410180	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	9q22.33		rs410180-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1363	chr9	102037969	102037970	rs10819643	24023788	Ong BA	2013-09-02	PLoS One	Gene network analysis in a pediatric cohort identifies novel lung function genes.	Lung function (forced expiratory flow during mid-portion (25% and 75%) of forced vital capacity)	1,015 European ancestry individuals, 541 African American individuals	NA	9q22.33	NR	rs10819643-?		1E-6	(EA)			Illumina [up to 524000]	N
1363	chr9	102068911	102068912	rs182704	28877031	Zhang G	2017-09-07	N Engl J Med	Genetic Associations with Gestational Duration and Spontaneous Preterm Birth.	Gestational age at birth (maternal effect)	43,568 European ancestry mothers	8,643 European ancestry mothers	9q22.33	SEC61B, ALG2, TGFBR1	rs182704-C	0.344	5E-7		0.658	[NR] unit increase	Illumina [15635593] (imputed)	N
1363	chr9	102076658	102076659	rs10988763	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	9q22.33	NR	rs10988763-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
1363	chr9	102079940	102079941	rs10760678	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	9q22.33		rs10760678-?	NR	7E-10				NR [~ 8900000] (imputed)	N
1363	chr9	102083529	102083530	rs323740	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Smoking status (ever vs never smokers)	336,066 British ancestry individuals	NA	9q22.33	NR	rs323740-C	0.5263	3E-9		1.0302905	NR	NR [8968716] (imputed)	N
1363	chr9	102088184	102088185	rs444558	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	9q22.33	NR	rs444558-A	0.459	2E-9		0.00649237	[0.0044-0.0086] unit decrease	NR [9732723] (imputed)	N
1363	chr9	102090597	102090598	rs323733	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	9q22.33	NR	rs323733-A	0.76	2E-8		0.012	[0.0077-0.0163] unit decrease	NR [NR]	N
1363	chr9	102100347	102100348	rs4989244	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		9q22.33	SEC61B	rs4989244-G	0.567822	4E-8		0.00763477	[0.0049-0.0104] unit increase	Affymetrix [12370749]	N
1364	chr9	102108975	102108976	rs10988775	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	9q22.33	Intergenic	rs10988775-T	0.8412	1E-16	(MTAG)	0.0202	[0.015-0.025] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1364	chr9	102114299	102114300	rs10819655	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	9q22.33	Intergenic	rs10819655-A	0.5007	2E-13		0.0144	[0.011-0.018] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1364	chr9	102114674	102114675	rs323726	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	9q22.33	Intergenic	rs323726-C	0.7229	7E-11	(MTAG)	0.0167	[0.012-0.022] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1364	chr9	102119089	102119090	rs12551906	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	9q22.33	NA	rs12551906-A	0.294	8E-11		0.0117	[0.0082-0.0152] unit decrease	NR [~ 27400000] (imputed)	N
1364	chr9	102119089	102119090	rs12551906	23874384	Viding E	2013-07-09	PLoS One	Genetics of callous-unemotional behavior in children.	Callous-unemotional behaviour	2,930 European ancestry children	NA	9q22.33	SEC61B, ALG2, TGFBR1	rs12551906-G	0.689	3E-6				Affymetrix [1724317] (imputed)	N
1364	chr9	102141130	102141131	rs7048860	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	9q22.33	Intergenic	rs7048860-A	0.8395	3E-14	(MTAG)	0.0171	[0.013-0.021] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1364	chr9	102141130	102141131	rs7048860	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	9q22.33	Intergenic	rs7048860-A	0.8395	2E-11		0.0207	[0.015-0.027] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1364	chr9	102153697	102153698	rs1373129	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	9q22.33	SEC61B	rs1373129-A	0.4715	3E-10		0.012676746	[0.0087-0.0166] unit decrease	Affymetrix [11514654] (imputed)	N
1364	chr9	102160600	102160601	rs2416770	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	9q22.33		rs2416770-C	0.513	4E-15		0.01	[0.008-0.012] unit decrease	NR [NR] (imputed)	N
1364	chr9	102162569	102162570	rs62565259	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	9q22.33	SEC61B	rs62565259-C	0.829031	2E-10		0.0170569	[0.012-0.022] unit increase	Affymetrix [NR] (imputed)	N
1364	chr9	102162569	102162570	rs62565259	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	9q22.33	SEC61B	rs62565259-C	0.828998	6E-10		0.015788	[0.011-0.021] unit decrease	Affymetrix [NR] (imputed)	N
1364	chr9	102162569	102162570	rs62565259	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	9q22.33	NA	rs62565259-T	0.1646	4E-9		0.0157	[0.01-0.021] unit decrease	NR [~ 27400000] (imputed)	N
1364	chr9	102172146	102172147	rs1867282	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interferon gamma levels	7,701 Finnish ancestry individuals	NA	9q22.33	NR	rs1867282-C		3E-6		0.0774	[0.045-0.11] SD units decrease	NR [10700000] (imputed)	N
1364	chr9	102190128	102190129	rs10512267	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-4 levels	8,124 Finnish ancestry individuals	NA	9q22.33	NR	rs10512267-C		3E-7		0.0824	[0.051-0.114] SD units increase	NR [10700000] (imputed)	N
1364	chr9	102225543	102225544	rs35775808	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	9q22.33	NR	rs35775808-?	NR	7E-6				Affymetrix [5486770] (imputed)	N
1364	chr9	102234322	102234323	rs649057	27632927	Einarsdottir E	2016-09-16	Sci Rep	Genome-wide association analysis reveals variants on chromosome 19 that contribute to childhood risk of chronic otitis media with effusion.	Otitis media (chronic)	512 Finnish ancestry child cases, 2,073 Finnish ancestry controls	1,466 child cases, 3,394 controls	9q22.33		rs649057-?	NR	7E-7	(Finnish)			Illumina [319683]	N
1364	chr9	102234322	102234323	rs649057	27632927	Einarsdottir E	2016-09-16	Sci Rep	Genome-wide association analysis reveals variants on chromosome 19 that contribute to childhood risk of chronic otitis media with effusion.	Otitis media	803 Finnish ancestry child cases, 2,073 Finnish ancestry controls	NA	9q22.33	NR	rs649057-?	NR	2E-6				Illumina [319683]	N
1364	chr9	102234322	102234323	rs649057	23470693	Zeng Z	2013-03-07	J Dent Res	Genome-wide association studies of pit-and-fissure- and smooth-surface caries in permanent dentition.	Smooth-surface caries	982 European ancestry individuals	NA	9q22.33	NR	rs649057-T	0.05057	8E-6		6.806	[NR] unit increase	Illumina [1200000] (imputed)	N
1364	chr9	102234322	102234323	rs649057	23064961	Shaffer JR	2012-10-11	J Dent Res	GWAS of dental caries patterns in the permanent dentition.	Dental caries	920 European ancestry individuals	NA	9q22.33	TGFBR1, NR4A3	rs649057-?	NR	5E-6	(DMFS5)			Illumina [518997]	N
1365	chr9	102260593	102260594	rs398011624	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	9q22.33		rs398011624-A	NR	3E-9		0.0148	[0.0099-0.0197] unit increase	Affymetrix, Illumina [20529698] (imputed)	N
1365	chr9	102268860	102268861	rs7864482	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	9q22.33	NR	rs7864482-G	0.377314	2E-11		0.012766	[0.009-0.0165] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
1365	chr9	102281382	102281383	rs10760691	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	9q22.33	NR	rs10760691-A	0.617661	4E-14		0.0168382	[0.012-0.021] unit decrease	NR [NR]	N
1365	chr9	102337330	102337331	rs11788118	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	9q22.33	AK057451	rs11788118-?	NR	2E-8		1.1363636	[1.09-1.19]	Illumina [at least 5000000] (imputed)	N
1366	chr9	102400262	102400263	rs10819689	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls	NA	9q22.33	AK057451	rs10819689-?	NR	9E-7		1.1494253	[1.09-1.20]	Illumina [at least 5000000] (imputed)	N
1367	chr9	102519787	102519788	rs113021743	30219690	Heinzman JT	2018-09-07	J Affect Disord	GWAS and systems biology analysis of depressive symptoms among smokers from the COPDGene cohort.	Depression in smokers	1,622 European ancestry cases, 391 African American cases, 4,954 European ancestry controls, 2,749 African American controls	NA	9q22.33	NR4A3	rs113021743-C	0.9525	5E-6	(AA)			Illumina [NR] (imputed)	N
1367	chr9	102585544	102585545	rs1405209	34127860	Robertson CC	2021-06-14	Nat Genet	Fine-mapping, trans-ancestral and genomic analyses identify causal variants, cells, genes and drug targets for type 1 diabetes.	Type 1 diabetes	20,065 European ancestry cases, 33,065 European ancestry controls, 1,045 other-admixed ancestry cases, 1,103 other-admixed ancestry controls, 1,043 African ancestry cases, 3,206 African ancestry controls	NA	9q31.1	NR4A3	rs1405209-C	0.375	3E-8		1.075		Illumina [715631] (imputed)	N
1367	chr9	102585544	102585545	rs1405209	34127860	Robertson CC	2021-06-14	Nat Genet	Fine-mapping, trans-ancestral and genomic analyses identify causal variants, cells, genes and drug targets for type 1 diabetes.	Type 1 diabetes	20,065 European ancestry cases, 33,065 European ancestry controls, 1,045 other-admixed ancestry cases, 1,103 other-admixed ancestry controls, 1,043 African ancestry cases, 3,206 African ancestry controls	NA	9q31.1	NR4A3	rs1405209-C	0.375	3E-8		1.075		Illumina [715631] (imputed)	N
1367	chr9	102585544	102585545	rs1405209	33536424	Wang YF	2021-02-03	Nat Commun	Identification of 38 novel loci for systemic lupus erythematosus and genetic heterogeneity between ancestral groups.	Systemic lupus erythematosus	4,222 Han Chinese ancestry cases, 8,431 Han Chinese ancestry controls, 4,576 European ancestry cases, 8,039 European ancestry controls	NA	9q31.1	NR4A3	rs1405209-C	NR	2E-8		1.11	[1.07-1.15]	Illumina [NR] (imputed)	N
1367	chr9	102587232	102587233	rs191205566	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	9q31.1	NR4A3	rs191205566-T	0.015134519	1E-7		1.4017447	[1.237134667-1.588257488]	Illumina [10439017] (imputed)	N
1367	chr9	102623327	102623328	rs7023690	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9q31.1		rs7023690-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1367	chr9	102627583	102627583	rs147117699	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	9q31.1	NR4A3	rs147117699-AAT	0.411281	2E-10		0.014561348	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
1368	chr9	102677588	102677589	rs41305451	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	9q31.1	STX17	rs41305451-C	0.0991524365311147	1E-7	(G_Desulfovibrio_RNT)	0.32804	[0.21-0.45] unit increase	Illumina [7711310] (imputed)	N
1368	chr9	102723691	102723692	rs10760706	20596022	Petukhova L	2010-07-01	Nature	Genome-wide association study in alopecia areata implicates both innate and adaptive immunity.	Alopecia areata	Up to 1,054 European ancestry cases, 3,278 European ancestry controls	NA	9q31.1	STX17	rs10760706-G	0.31	4E-7		1.32	[1.19-1.47]	Illumina [463301]	N
1368	chr9	102732236	102732237	rs9556	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	9q31.1		rs9556-?	NR	7E-9				NR [~ 8900000] (imputed)	N
1368	chr9	102733503	102733504	rs72746345	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	9q31.1		rs72746345-?	NR	2E-10				Affymetrix [NR] (imputed)	N
1369	chr9	102760790	102760791	rs79529267	32141793	Garman L	2020-03-06	Ocul Immunol Inflamm	Genome-Wide Association Study of Ocular Sarcoidosis Confirms HLA Associations and Implicates Barrier Function and Autoimmunity in African Americans.	Ocular sarcoidosis	260 African American cases, 1,551 African American controls	NA	9q31.1	NR	rs79529267-T	NR	2E-6		3.932	[2.24-6.89]	Illumina [13976150] (imputed)	N
1369	chr9	102774214	102774215	rs10988944	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	9q31.1	NR	rs10988944-?	NR	1E-7				Affymetrix [NR]	N
1369	chr9	102808684	102808685	rs7028939	23551011	Zhao L	2013-04-02	Ann Hum Genet	Genome-wide association study of pre-eclampsia detects novel maternal single nucleotide polymorphisms and copy-number variants in subsets of the Hyperglycemia and Adverse Pregnancy Outcome (HAPO) study cohort.	Preeclampsia	21 Afro-Caribbean cases, 1,010 Afro-Caribbean controls, 50 European ancestry cases, 1,202 European ancestry controls, 62 Hispanic cases, 658 Hispanic controls	NA	9q31.1	ERP44	rs7028939-?	NR	3E-6	(EA)	3.17	[1.95-5.15]	Illumina [2485249] (imputed)	N
1369	chr9	102854155	102854156	rs7860280	32141793	Garman L	2020-03-06	Ocul Immunol Inflamm	Genome-Wide Association Study of Ocular Sarcoidosis Confirms HLA Associations and Implicates Barrier Function and Autoimmunity in African Americans.	Ocular sarcoidosis	260 African American cases, 1,551 African American controls	NA	9q31.1	NR	rs7860280-T	NR	5E-6		3.619	[2.08-6.28]	Illumina [13976150] (imputed)	N
1369	chr9	102861612	102861613	rs7024375	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Chickenpox	107,769 European ancestry cases, 15,982 European ancestry controls	NA	9q31.1	NR	rs7024375-?	NR	4E-6		0.0756	[0.043-0.108] unit decrease	Illumina [at least 560000] (imputed)	N
1370	chr9	102948684	102948685	rs6479003	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	9q31.1		rs6479003-?	NR	9E-10				NR [~ 8900000] (imputed)	N
1370	chr9	102976540	102976541	rs10989019	23551011	Zhao L	2013-04-02	Ann Hum Genet	Genome-wide association study of pre-eclampsia detects novel maternal single nucleotide polymorphisms and copy-number variants in subsets of the Hyperglycemia and Adverse Pregnancy Outcome (HAPO) study cohort.	Preeclampsia	21 Afro-Caribbean cases, 1,010 Afro-Caribbean controls, 50 European ancestry cases, 1,202 European ancestry controls, 62 Hispanic cases, 658 Hispanic controls	NA	9q31.1	INVS	rs10989019-?	NR	2E-6	(EA)	3.21	[1.98-5.20]	Illumina [2485249] (imputed)	N
1370	chr9	102984707	102984708	rs61234719	32141793	Garman L	2020-03-06	Ocul Immunol Inflamm	Genome-Wide Association Study of Ocular Sarcoidosis Confirms HLA Associations and Implicates Barrier Function and Autoimmunity in African Americans.	Ocular sarcoidosis	260 African American cases, 1,551 African American controls	NA	9q31.1	NR	rs61234719-C	NR	2E-6		3.557	[2.10-6.03]	Illumina [13976150] (imputed)	N
1370	chr9	103007413	103007414	rs2787394	33979322	Currant H	2021-05-12	PLoS Genet	Genetic variation affects morphological retinal phenotypes extracted from UK Biobank optical coherence tomography images.	Retinal nerve fibre layer thickness or ganglion cell inner plexiform layer thickness (MTAG)	31,434 European ancestry individuals	NA	9q31.1	NR	rs2787394-T	0.41	9E-9		0.28	[0.18-0.38] unit decrease	Affymetrix [9231066] (imputed)	N
1370	chr9	103007413	103007414	rs2787394	33979322	Currant H	2021-05-12	PLoS Genet	Genetic variation affects morphological retinal phenotypes extracted from UK Biobank optical coherence tomography images.	Ganglion cell inner plexiform layer (GCIPL) thickness	31,434 European ancestry individuals	NA	9q31.1	NR	rs2787394-T	0.41	9E-9		0.28	[0.18-0.38] unit decrease	Affymetrix [9231066] (imputed)	N
1370	chr9	103007413	103007414	rs2787394	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	9q31.1	INVS	rs2787394-?	NR	3E-19		0.6212	[0.48-0.76] unit increase	Affymetrix [11100000] (imputed)	N
1371	chr9	103074262	103074263	rs7048601	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	9q31.1	NR	rs7048601-?	NR	1E-8		0.12605	[0.083-0.169] unit increase	Affymetrix [7794483] (imputed)	N
1371	chr9	103108177	103108178	rs9299338	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	9q31.1		rs9299338-?	NR	2E-16				NR [~ 8900000] (imputed)	N
1371	chr9	103108940	103108941	rs2151131	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	316,772 European ancestry male individuals	NA	9q31.1	NR	rs2151131-C	0.2101	4E-8		0.0117	[0.0076-0.0158] unit decrease	NR [~ 27400000] (imputed)	N
1371	chr9	103113651	103113652	rs3931548	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	9q31.1		rs3931548-A	NR	7E-16		0.0175	[0.013-0.022] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1371	chr9	103113651	103113652	rs3931548	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	9q31.1		rs3931548-A	NR	1E-12		0.0175	[0.013-0.022] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1371	chr9	103113651	103113652	rs3931548	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	9q31.1		rs3931548-A	0.38	9E-9				NR [NR] (imputed)	N
1371	chr9	103113651	103113652	rs3931548	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	High density lipoprotein cholesterol levels	392,965 European ancestry individuals	NA	9q31.1		rs3931548-A	0.38	2E-6		0.009	mmol/L decrease	NR [NR] (imputed)	N
1371	chr9	103113651	103113652	rs3931548	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	9q31.1		rs3931548-A	0.38	4E-12		0.011	% increase	NR [NR] (imputed)	N
1371	chr9	103113651	103113652	rs3931548	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		9q31.1	TEX10	rs3931548-C	0.618149	3E-13		0.0105077	[0.0077-0.0133] unit decrease	Affymetrix [12370749]	N
1371	chr9	103114792	103114793	rs1930244	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	9q31.1	NR	rs1930244-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1372	chr9	103217395	103217396	rs1213	25590795	Yazar S	2015-04-01	JAMA Ophthalmol	Genetic and environmental factors in conjunctival UV autofluorescence.	Conjunctival UV autofluorescence (CUVAF)	1,251 European ancestry individuals	NA	9q31.1	MSANTD3	rs1213-?		7E-7		35.18	[21.32-49.04] unit decrease	Illumina [5003381] (imputed)	N
1372	chr9	103228911	103228912	rs117539856	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial squamous cell lung carcinoma	367 European ancestry cases, 31,563 European ancestry controls	NA	9q31.1	TMEFF1	rs117539856-A	0.005	3E-6		7.98	[3.34-19.03]	Illumina [7959153] (imputed)	N
1373	chr9	103314416	103314417	rs16919174	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	9q31.1	NR	rs16919174-?	NR	3E-6	(AA)	116.97	[112.87-121.07]	Illumina [905956]	N
1373	chr9	103331404	103331405	rs2800290	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	9q31.1		rs2800290-C	NR	1E-19		0.0201	[0.016-0.024] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
1373	chr9	103331404	103331405	rs2800290	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	9q31.1	TMEFF1	rs2800290-C	0.42	4E-12		6.92	z-score increase	Affymetrix [4314223] (imputed)	N
1373	chr9	103334608	103334609	rs2800281	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	9q31.1		rs2800281-?	NR	9E-10				NR [~ 8900000] (imputed)	N
1373	chr9	103348633	103348634	rs2780956	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	315,284 European ancestry male individuals	NA	9q31.1	NR	rs2780956-A	0.4136	2E-6		0.0087	[0.0052-0.0122] unit decrease	NR [~ 27400000] (imputed)	N
1373	chr9	103356111	103356112	rs1628249	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	9q31.1	MURC	rs1628249-C	NR	4E-8		0.0174363	[0.011-0.024] unit decrease	Affymetrix [127266] (imputed)	N
1373	chr9	103368362	103368363	rs10819795	24535457	Chouraki V	2014-02-18	Mol Psychiatry	A genome-wide association meta-analysis of plasma A? peptides concentrations in the elderly.	Plasma amyloid beta peptide concentrations (ABx-42)	3,528 European ancestry individuals	NA	9q31.1	MURC	rs10819795-A	0.025	7E-6		0.23	[0.13-0.33] unit increase	Illumina [2316178] (imputed)	N
1373	chr9	103384198	103384199	rs10760734	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	9q31.1	NR	rs10760734-?	NR	4E-9				Affymetrix [NR]	N
1374	chr9	103452067	103452068	rs10123021	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque score in type 2 diabetes	691 African American individuals	205 African American individuals	9q31.1	intergenic	rs10123021-?	NR	9E-6		0.721	[0.33-1.11] unit increase	Illumina [at least 13000000] (imputed)	N
1374	chr9	103509903	103509904	rs4489373	33407418	Jonsson A	2021-01-06	BMC Med Genomics	Genome-wide association study of circulating levels of glucagon during an oral glucose tolerance test.	Glucagon levels in response to oral glucose tolerance test (120 minutes)	553 European ancestry individuals, 1,346 individuals	NA	9q31.1	NR	rs4489373-C	0.4668	8E-6		0.1445	[0.081-0.208] unit decrease	Illumina [NR] (imputed)	N
1374	chr9	103514182	103514183	rs10819824	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Dorea)	1,068 Japanese ancestry individuals	NA	9q31.1	intergenic	rs10819824-C	0.05	3E-6		0.0744	[0.043-0.106] unit decrease	Illumina [6380737] (imputed)	N
1375	chr9	103556803	103556804	rs10760763	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Iritis	110 East Asian ancestry cases, 175,543 East Asian ancestry controls	NA	9q31.1		rs10760763-A	0.657150268	7E-9		0.85486764	[0.57-1.14] unit decrease	Illumina [13429677] (imputed)	N
1375	chr9	103598351	103598352	rs73501482	28654678	Mandage R	2017-06-27	PLoS One	Genetic factors affecting EBV copy number in lymphoblastoid cell lines derived from the 1000 Genome Project samples.	Epstein-Barr virus copy number in lymphoblastoid cell lines	389 East Asian ancestry individuals, 189 South Asian ancestry individuals, 492 European ancestry individuals, 467 Sub-Saharan African ancestry individuals, 59 African American individuals, 157 Hispanic/Latino individuals	NA	9q31.1	MURC, PLPPR1	rs73501482-?	NR	9E-6	(AA and Sub-Saharan African)			NR [at least 880000]	N
1376	chr9	103764629	103764630	rs12004401	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	9q31.1	LPPR1	rs12004401-T	0.11510117065959	2E-7	(G_unclassified_C_Clostridia_HB)	0.488944	[0.3-0.67] unit decrease	Illumina [7711310] (imputed)	N
1376	chr9	103793543	103793544	rs2251885	26632684	Dong J	2015-11-01	Medicine (Baltimore)	Genome-wide Meta-analysis on the Sense of Smell Among US Older Adults.	Sense of smell	6,252 European ancestry individuals	NA	9q31.1	PRG-3	rs2251885-A	0.37	6E-6	(Ajusted for ApoE)	0.02	[0.0004-0.0396] ln(smell score+1) increase	Affymetrix, Illumina [2543887] (imputed)	N
1376	chr9	103793543	103793544	rs2251885	26632684	Dong J	2015-11-01	Medicine (Baltimore)	Genome-wide Meta-analysis on the Sense of Smell Among US Older Adults.	Sense of smell	6,252 European ancestry individuals	NA	9q31.1	PRG-3	rs2251885-A	0.37	5E-6		0.02	[0.0004-0.0396] ln(smell score+1) increase	Affymetrix, Illumina [2543887] (imputed)	N
1377	chr9	103877450	103877451	rs73656147	30338293	Wallen ZD	2018-10-05	Neurol Genet	Plasticity-related gene 3 (LPPR1) and age at diagnosis of Parkinson disease.	Parkinson's disease (age at diagnosis)	1,950 European ancestry cases	726 European ancestry cases	9q31.1	LPPR1	rs73656147-?	NR	9E-9		4.08	[0.70-7.45] years decrease	Illumina [8500000] (imputed)	N
1377	chr9	103891378	103891379	rs7026834	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9q31.1		rs7026834-?	NR	9E-19				NR [~ 8900000] (imputed)	N
1377	chr9	103891604	103891605	rs56227649	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	9q31.1		rs56227649-A	NR	3E-11		0.0137	[0.0096-0.0178] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1377	chr9	103920360	103920361	rs137875211	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	9q31.1	LPPR1	rs137875211-T	0.0130668849510823	2E-7	(G_Sporobacter_HB)	1.60545	[1.01-2.21] unit decrease	Illumina [7711310] (imputed)	N
1378	chr9	103952230	103952231	rs148465104	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	9q31.1	PLPPR1	rs148465104-T	0.9983	6E-6		0.6639	[0.38-0.95] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1378	chr9	104008392	104008393	rs7849892	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9q31.1	NR	rs7849892-T	0.01045	1E-8	(CYP2C8)	0.5061	NR unit increase	Illumina [1671387] (imputed)	N
1378	chr9	104024773	104024774	rs561398374	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Interstitial lung disease	2,267 European ancestry cases, 467,560 European ancestry controls, 1,046 East Asian ancestry cases, 176,974 East Asian ancestry controls	NA	9q31.1		rs561398374-A	NR	2E-8		14.1008	[9.21-18.99] unit increase	Affymetrix, Illumina [25843170] (imputed)	N
1378	chr9	104024773	104024774	rs561398374	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Interstitial lung disease	1,046 East Asian ancestry cases, 176,974 East Asian ancestry controls	NA	9q31.1		rs561398374-A	2.38542E-4	2E-8		14.100764	[9.21-18.99] unit increase	Illumina [13429875] (imputed)	N
1378	chr9	104035905	104035906	rs10989462	29855537	Hirata T	2018-05-31	Sci Rep	Japanese GWAS identifies variants for bust-size, dysmenorrhea, and menstrual fever that are eQTLs for relevant protein-coding or long non-coding RNAs.	Menstruation quality of life impact (dysmenorrhea)	3,573 Japanese ancestry female cases, 2,161 Japanese ancestry female controls	3,580 Japanese ancestry female cases, 2,034 Japanese ancestry female controls	9q31.1	NR	rs10989462-G	0.35727413	4E-6		0.13606437	[0.078-0.194] unit increase	Affymetrix [536506]	N
1378	chr9	104064556	104064557	rs117554945	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9q31.1	NR	rs117554945-C	0.01568	1E-8	(HRG)	0.09661	NR unit increase	Illumina [1671387] (imputed)	N
1379	chr9	104113738	104113739	rs371271858	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	9q31.1		rs371271858-T	NR	4E-11		0.0219	[0.015-0.028] unit increase	Affymetrix, Illumina [20529698] (imputed)	N
1379	chr9	104119651	104119652	rs59059615	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	9q31.1	NR	rs59059615-G	0.848908	1E-13		0.0221138	[0.016-0.028] unit decrease	NR [NR]	N
1379	chr9	104186502	104186503	rs476934	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	9q31.1	ALDOB	rs476934-T	0.121848	9E-58		0.00548392	[0.0048-0.0062] unit increase	Affymetrix [13995440] (imputed)	N
1379	chr9	104188841	104188842	rs3739721	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	9q31.1		rs3739721-G	NR	1E-9		0.0414	[0.028-0.055] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
1379	chr9	104188841	104188842	rs3739721	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	150,545 East Asian ancestry individuals	NA	9q31.1		rs3739721-G	0.065969	1E-9		0.0414327	[0.028-0.055] unit increase	Illumina [13478866] (imputed)	N
1379	chr9	104189855	104189856	rs1800546	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	9q31.1		rs1800546-G	NR	6E-12		0.089	[0.064-0.114] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
1379	chr9	104189855	104189856	rs1800546	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Cystatin C levels	437,846 European ancestry individuals	NA	9q31.1		rs1800546-?	NR	1E-8		0.0761969	[0.049-0.103] unit decrease	NR [9800000] (imputed)	N
1379	chr9	104189855	104189856	rs1800546	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Creatinine levels	437,660 European ancestry individuals	NA	9q31.1		rs1800546-?	NR	2E-10		0.0890942	[0.062-0.117] unit decrease	NR [9800000] (imputed)	N
1379	chr9	104189855	104189856	rs1800546	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Apolipoprotein A1 levels	398,508 European ancestry individuals	NA	9q31.1		rs1800546-?	NR	2E-11		0.0952878	[0.067-0.124] unit increase	NR [9800000] (imputed)	N
1379	chr9	104189855	104189856	rs1800546	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	9q31.1	NR	rs1800546-G	NR	5E-11		0.1062	[0.074-0.138] unit increase	Affymetrix [9000000] (imputed)	N
1379	chr9	104189855	104189856	rs1800546	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	9q31.1	NR	rs1800546-G	NR	6E-11		0.1061	[0.074-0.138] unit decrease	Affymetrix [9000000] (imputed)	N
1379	chr9	104189855	104189856	rs1800546	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	9q31.1	NR	rs1800546-G	NR	2E-11		0.1083	[0.077-0.14] unit decrease	Affymetrix [9000000] (imputed)	N
1379	chr9	104197048	104197049	rs78779410	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	9q31.1	NR	rs78779410-A	NR	5E-11		0.0618	[0.043-0.08] unit increase	Affymetrix [9000000] (imputed)	N
1380	chr9	104210431	104210432	rs10760796	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	9q31.1	NR	rs10760796-C	NR	5E-40		0.0487	[0.041-0.056] unit decrease	Affymetrix [9000000] (imputed)	N
1380	chr9	104218973	104218974	rs17187478	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	9q31.1	NR	rs17187478-C	NR	1E-25		0.0573	[0.047-0.068] unit increase	Affymetrix [9000000] (imputed)	N
1380	chr9	104219174	104219175	rs2183745	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	118,886 East Asian ancestry individuals	NA	9q31.1		rs2183745-A	0.589795	1E-29		0.0477833	[0.04-0.056] unit decrease	Illumina [13474352] (imputed)	N
1380	chr9	104219174	104219175	rs2183745	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	9q31.1	TMEM246-AS1	rs2183745-T	0.3247	2E-133		0.00595581	[0.0055-0.0064] unit increase	Affymetrix [13995440] (imputed)	N
1380	chr9	104219174	104219175	rs2183745	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	9q31.1	ALDOB, TMEM246	rs2183745-T	0.33	1E-67		17.4	z-score increase	Affymetrix [4311822] (imputed)	N
1380	chr9	104219174	104219175	rs2183745	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Serum alkaline phosphatase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	9q31.1	ALDOB, TMEM246-AS1	rs2183745-?		4E-30		0.0527	[0.044-0.062] unit increase	Illumina [31500000] (imputed)	N
1380	chr9	104219174	104219175	rs2183745	31666285	Olafsson S	2019-10-30	Cancer Epidemiol Biomarkers Prev	Common and rare sequence variants influencing tumor biomarkers in blood.	Serum alkaline phosphatase levels	162,774 Icelandic ancestry individuals	NA	9q31.1	intergenic	rs2183745-T	0.278	1E-10		0.03	[0.02-0.04] unit increase	Illumina [NR] (imputed)	N
1380	chr9	104219174	104219175	rs2183745	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum alkaline phosphatase levels	105,030 Japanese ancestry individuals	NA	9q31.1	ALDOB, TMEM246-AS1	rs2183745-?	NR	4E-26		0.05359	[0.044-0.064] unit decrease novel	Illumina [6108953] (imputed)	N
1380	chr9	104220374	104220378	rs369130933	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	9q31.1		rs369130933-C	NR	3E-126		0.0518	[0.047-0.056] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
1380	chr9	104222707	104222708	rs10989517	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal cancer	978 Austrian ancestry colorectal cancer cases, 636 Austrian ancestry advanced colorectal adenoma cases, 4,294 European ancestry controls	NA	9q31.1	Intergenic	rs10989517-?		8E-6		1.494	[NR]	Affymetrix [492217] (imputed)	N
1380	chr9	104223232	104223233	rs10819937	22001757	Chambers JC	2011-10-16	Nat Genet	Genome-wide association study identifies loci influencing concentrations of liver enzymes in plasma.	Liver enzyme levels (alkaline phosphatase)	Up to 52,350 European ancestry individuals, up to 8,739 Indian Asian ancestry individuals	NA	9q31.1	ALDOB, C9orf125	rs10819937-C	0.17	1E-9		2.5	[1.40-3.60] % increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1380	chr9	104226807	104226808	rs4742814	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	9q31.1	NR	rs4742814-G	0.479	9E-7	(IFNgamma_ABC_of_CD20p)			Illumina [5084123] (imputed)	N
1380	chr9	104227660	104227661	rs13290936	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9q31.1	NR	rs13290936-C	0.2491	1E-8	(HSPA9)	0.2544	NR unit increase	Illumina [1671387] (imputed)	N
1380	chr9	104227660	104227661	rs13290936	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9q31.1	NR	rs13290936-C	0.2491	1E-8	(HEXB)	0.02852	NR unit increase	Illumina [1671387] (imputed)	N
1380	chr9	104230976	104230977	rs10989523	32518416	Dawoud AAZ	2020-06-10	Leukemia	Clonal myelopoiesis in the UK Biobank cohort: ASXL1 mutations are strongly associated with smoking.	Myeloid clonal hematopoiesis	1,166 cases, 30,892 controls	NA	9q31.1	NR	rs10989523-T	0.8608	3E-6		1.3755157	NR	Affymetrix [265112]	N
1380	chr9	104236773	104236774	rs1929494	25352737	Ritchie MD	2014-09-19	Mol Vis	Electronic medical records and genomics (eMERGE) network exploration in cataract: several new potential susceptibility loci.	Age-related cataracts	5,503 European, Black, and other ancestry cases age 50 and older, 1,894 European, Black, and other ancestry controls age 50 and older	NA	9q31.1	LOC100129210, ALDOB, C90rf125	rs1929494-T	0.4391	2E-6		1.217	[NR]	Illumina [530101]	N
1380	chr9	104249506	104249507	rs41282145	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	9q31.1	TMEM246	rs41282145-T	0.97754	5E-73		0.013449	[0.012-0.015] unit decrease	Affymetrix [13995440] (imputed)	N
1380	chr9	104249506	104249507	rs41282145	31666285	Olafsson S	2019-10-30	Cancer Epidemiol Biomarkers Prev	Common and rare sequence variants influencing tumor biomarkers in blood.	Serum alkaline phosphatase levels	162,774 Icelandic ancestry individuals	NA	9q31.1	TMEM246	rs41282145-A	0.043	1E-14		0.08	[0.06-0.10] unit increase	Illumina [NR] (imputed)	N
1380	chr9	104325201	104325202	rs41282153	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	9q31.1	NR	rs41282153-T	0.065707	3E-10		0.024434	[0.017-0.032] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
1381	chr9	104337743	104337744	rs7859863	34177598	Wolking S	2021-06-09	Front Pharmacol	Role of Common Genetic Variants for Drug-Resistance to Specific Anti-Seizure Medications.	Response to lamotrigine in epilepsy	471 European ancestry cases, 929 European ancestry controls	NA			rs7859863-?	NR	5E-6				Illumina [NR] (imputed)	N
1381	chr9	104363422	104363423	rs35572409	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	9q31.1	NR	rs35572409-?	NR	3E-6		0.0080604	[0.0047-0.0114] unit increase	Affymetrix [805426] (imputed)	N
1381	chr9	104373786	104373787	rs9299346	28500057	Bluett J	2017-05-12	Ann Rheum Dis	HLA-A 31:01 is not associated with the development of methotrexate pneumonitis in the UK population: results from a genome-wide association study.	Methotrexate-induced interstitial lung disease in rheumatoid arthritis	62 European ancestry cases, 175 European ancestry controls	NA	9q31.1	NR	rs9299346-?		2E-6		2.76	[NR]	Illumina [NR]	N
1381	chr9	104376215	104376216	rs10119861	31251335	Turpin W	2019-10-01	Inflamm Bowel Dis	Analysis of Genetic Association of Intestinal Permeability in Healthy First-degree Relatives of Patients with Crohn's Disease.	Intestinal permeability measurement	1,075 European ancestry first-degree relatives of Crohn's disease patients	NA		GRIN3A	rs10119861-G	0.24	1E-6		0.14	[0.081-0.199] unit increase	Illumina [3700000] (imputed)	N
1381	chr9	104413669	104413670	rs12380816	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	9q31.1	Intergenic	rs12380816-T	0.7596	1E-8	(MTAG)	0.011	[0.0073-0.0147] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1381	chr9	104413669	104413670	rs12380816	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	9q31.1	Intergenic	rs12380816-T	0.7651	2E-9	(MTAG)	0.0093	[0.0064-0.0122] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1381	chr9	104414055	104414056	rs10760799	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	9q31.1		rs10760799-?	NR	9E-8				NR [~ 8900000] (imputed)	N
1381	chr9	104427263	104427264	rs7849782	26434682	Lin YJ	2015-11-01	Sci Rep	Genetic variants in PLCB4/PLCB1 as susceptibility loci for coronary artery aneurysm formation in Kawasaki disease in Han Chinese in Taiwan.	Coronary artery aneurysm in Kawasaki disease	76 Han Chinese ancestry child cases, 186 Han Chinese ancestry child controls	NA	9q31.1	GRIN3A	rs7849782-?	NR	8E-6		4.03	[NR]	Affymetrix [906600]	N
1382	chr9	104537609	104537610	rs4523321	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	9q31.1	GRIN3A	rs4523321-A	0.0040	2E-6	(Vigorous activity )	0.03	[NR] %awake time increase	Illumina [899892]	N
1382	chr9	104537609	104537610	rs4523321	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	9q31.1	GRIN3A	rs4523321-A	0.0040	1E-6	(Vigorous activity )	0.03	[NR] min/d increase	Illumina [899892]	N
1383	chr9	104622867	104622868	rs10989661	19247474	Caporaso N	2009-02-27	PLoS One	Genome-wide and candidate gene association study of cigarette smoking behaviors.	Smoking behavior	2,617 European ancestry smokers, 1,725 European ancestry controls	NA	9q31.1	intergenic	rs10989661-?	0.74	6E-6	(CIGSTAT)	1.68	[NR]	Illumina [~ 518000]	N
1383	chr9	104623358	104623359	rs12552818	23870195	Wojczynski MK	2013-07-19	BMC Med Genet	Genetics of coronary artery calcification among African Americans, a meta-analysis.	Coronary artery calcification	5,823 African American individuals	9,992 European ancestry individuals	9q31.1	GRIN3A	rs12552818-A	0.23	3E-6	(AA)	0.19	[0.11-0.27] unit decrease	Affymetrix, Illumina [up to 2727966] (imputed)	N
1383	chr9	104647155	104647156	rs1774093	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	9q31.1	GRIN3A	rs1774093-A	NR	7E-7	(between families)	4.956	unit decrease	Affymetrix [up to 15107142] (imputed)	N
1383	chr9	104662584	104662585	rs823920	28470677	Tang H	2017-05-03	Int J Cancer	Genetic polymorphisms associated with pancreatic cancer survival: a genome-wide association study.	Survival in pancreatic cancer	868 European ancestry cases	820 European ancestry cases	9q31.1	intergenic	rs823920-G	NR	7E-6		1.43	[1.22-1.67]	NR [7738399] (imputed)	N
1383	chr9	104663295	104663296	rs823918	28470677	Tang H	2017-05-03	Int J Cancer	Genetic polymorphisms associated with pancreatic cancer survival: a genome-wide association study.	Survival in pancreatic cancer	868 European ancestry cases	820 European ancestry cases	9q31.1	intergenic	rs823918-G	NR	3E-6		1.44	[1.23-1.68]	NR [7738399] (imputed)	N
1383	chr9	104668298	104668299	rs1165805	28470677	Tang H	2017-05-03	Int J Cancer	Genetic polymorphisms associated with pancreatic cancer survival: a genome-wide association study.	Survival in pancreatic cancer	868 European ancestry cases	820 European ancestry cases	9q31.1	intergenic	rs1165805-A	NR	8E-6		1.43	[1.22-1.67]	NR [7738399] (imputed)	N
1383	chr9	104672539	104672540	rs1630858	28470677	Tang H	2017-05-03	Int J Cancer	Genetic polymorphisms associated with pancreatic cancer survival: a genome-wide association study.	Survival in pancreatic cancer	868 European ancestry cases	820 European ancestry cases	9q31.1	intergenic	rs1630858-C	NR	5E-6		1.49	[1.26-1.77]	NR [7738399] (imputed)	N
1383	chr9	104674554	104674555	rs10989692	26265699	Karol SE	2015-08-11	Blood	Genetics of glucocorticoid-associated osteonecrosis in children with acute lymphoblastic leukemia.	Glucocorticoid-induced osteonecrosis (time dependent analysis)	164 European ancestry osteonecrosis cases, 4 Black osteonecrosis cases, 58 Hispanic osteonecrosis cases, 5 Asian ancestry osteonecrosis cases, 19 other ancestry osteonecrosis cases,  1,111 European ancestry treated controls, 135 Black treated controls, 543 Hispanic treated controls, 43 Asian ancestry treated controls, 203 other ancestry treated controls	NA	9q31.1	GRIN3A	rs10989692-A	0.1	4E-7		2.03	[1.55-2.66]	Affymetrix, Illumina [NR] (imputed)	N
1383	chr9	104674554	104674555	rs10989692	26265699	Karol SE	2015-08-11	Blood	Genetics of glucocorticoid-associated osteonecrosis in children with acute lymphoblastic leukemia.	Glucocorticoid-induced osteonecrosis (time dependent analysis)	164 European ancestry osteonecrosis cases, 4 Black osteonecrosis cases, 58 Hispanic osteonecrosis cases, 5 Asian ancestry osteonecrosis cases, 19 other ancestry osteonecrosis cases,  1,111 European ancestry treated controls, 135 Black treated controls, 543 Hispanic treated controls, 43 Asian ancestry treated controls, 203 other ancestry treated controls	NA	9q31.1	GRIN3A	rs10989692-A	0.089	2E-6	(European)	2.22	[1.64-2.99]	Affymetrix, Illumina [NR] (imputed)	N
1383	chr9	104674554	104674555	rs10989692	26265699	Karol SE	2015-08-11	Blood	Genetics of glucocorticoid-associated osteonecrosis in children with acute lymphoblastic leukemia.	Glucocorticoid-induced osteonecrosis (age 10 years and older)	230 osteonecrosis cases, 1,238 treated controls	NA	9q31.1	GRIN3A	rs10989692-A	0.0905	1E-6		2.07	[1.59-2.7]	Affymetrix, Illumina [NR] (imputed)	N
1383	chr9	104674554	104674555	rs10989692	26265699	Karol SE	2015-08-11	Blood	Genetics of glucocorticoid-associated osteonecrosis in children with acute lymphoblastic leukemia.	Glucocorticoid-induced osteonecrosis	274 European ancestry osteonecrosis cases, 25 Black osteonecrosis cases, 68 Hispanic osteonecrosis cases, 6 Asian ancestry osteonecrosis cases, 27 other ancestry osteonecrosis cases,  1,477 European ancestry treated controls, 223 Black treated controls, 572 Hispanic treated controls, 48 Asian ancestry treated controls, 235 other ancestry treated controls	NA	9q31.1	GRIN3A	rs10989692-A	0.106	3E-8				Affymetrix, Illumina [NR] (imputed)	N
1384	chr9	104742290	104742291	rs1935377	29678681	Matana A	2018-04-18	Genomics	Genome-wide meta-analysis identifies novel gender specific loci associated with thyroid antibodies level in Croatians.	Plasma anti-thyroid peroxidase levels	1,593 Croatian ancestry women, 1,025 Croatian ancestry men	NA	9q31.1	GRIN3A	rs1935377-T	NR	9E-8	(women)	0.2	[0.13-0.27] unit decrease	Illumina [5527232] (imputed)	N
1384	chr9	104742290	104742291	rs1935377	29678681	Matana A	2018-04-18	Genomics	Genome-wide meta-analysis identifies novel gender specific loci associated with thyroid antibodies level in Croatians.	Plasma anti-thyroglobulin levels	1,596 Croatian ancestry women, 1,033 Croatian ancestry men	NA	9q31.1	GRIN3A	rs1935377-T	NR	1E-6	(women)	0.179	[0.11-0.25] unit decrease	Illumina [5527232] (imputed)	N
1384	chr9	104760467	104760468	rs4457391	29678681	Matana A	2018-04-18	Genomics	Genome-wide meta-analysis identifies novel gender specific loci associated with thyroid antibodies level in Croatians.	Plasma anti-thyroglobulin and anti-thyroid peroxidase levels (bivariate analysis)	up to 1,596 Croatian ancestry women, up to 1,033 Croatian ancestry men	NA	9q31.1	GRIN3A	rs4457391-?	NR	8E-9	(women)	0.027	[0.018-0.036] unit decrease	Illumina [5527232] (imputed)	N
1384	chr9	104797962	104797963	rs2795384	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (severe respiratory symptoms vs population)	1,128 European ancestry cases, 679,531 European ancestry controls, 245 Hispanic or Latin American cases, 94,237 Hispanic or Latin American controls, 74 Black or African American cases, 22,383 Black or African American controls	NA	9q31.1		rs2795384-?	NR	1E-5		0.2493051	[0.14-0.36] unit decrease	Illumina [9906551] (imputed)	N
1385	chr9	104867837	104867838	rs10989824	23400010	Del-Aguila JL	2013-02-12	Pharmacogenomics J	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NA	9q31.1	GRIN3A	rs10989824-T	0.06	7E-6	(EA-glucose response)	5.85	[3.3-8.4] mg/dL decrease	Affymetrix, Illumina [> 2000000] (imputed)	N
1385	chr9	104918905	104918906	rs374016619	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	9q31.1	NR	rs374016619-?	NR	2E-7		0.0088503	[0.0055-0.0122] unit increase	Affymetrix [805426] (imputed)	N
1385	chr9	104943225	104943226	rs320203	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	Mucinous ovarian carcinoma	2,566 European ancestry cases, 40,941 European ancestry controls	NA	9q31.1	NR	rs320203-A	0.850197	2E-8		1.2856314	[1.17544642545976-1.4061450991104]	Illumina [11595112] (imputed)	N
1385	chr9	104944754	104944755	rs320209	20195266	Adkins DE	2010-03-02	Mol Psychiatry	Genomewide pharmacogenomic study of metabolic side effects to antipsychotic drugs.	Response to antipsychotic treatment	421 European ancestry, 214 African American, and 103 cases	NA	9q31.1	intergenic	rs320209-?	0.068	4E-7	(clozapine-glucose)			Affymetrix [492900]	N
1386	chr9	105045703	105045704	rs57728637	27611488	Almoguera B	2016-09-09	Am J Respir Crit Care Med	Identification of Four Novel Loci in Asthma in European American and African American Populations.	Asthma	819 African American non-allergic asthma cases, 2,218 African American allergic asthma cases 4,360 African American controls, 808 European American non-allergic asthma cases, 1,464 European American allergic asthma cases, 11,975 European American controls	NA	9q31.1	GRIN3A	rs57728637-?		2E-6	(AA)	0.375	[0.28-0.47] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1386	chr9	105058752	105058753	rs9409365	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	9q31.1	CYLC2	rs9409365-?	NR	4E-6	(adenosine monophosphate)	0.17941694	[0.1-0.26] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1386	chr9	105081994	105081995	rs550801461	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Smoking x traumatic event in childhood (sexually molested) interaction	127,766 European ancestry individuals	NA	9q31.1		rs550801461-?	NR	5E-9		1.7006	[1.13-2.27] unit increase	Affymetrix [NR] (imputed)	N
1386	chr9	105116200	105116201	rs10990032	27002377	Irvin MR	2016-07-01	Pharmacogenet Genomics	A genome-wide study of lipid response to fenofibrate in Caucasians: a combined analysis of the GOLDN and ACCORD studies.	Response to fenofibrate (triglyceride levels)	1,594 European ancestry individuals	350 Hispanic individuals, 138 African American individuals	9q31.1	GRIN3A, CYL2	rs10990032-G	0.94	2E-6	(European)	0.155	[0.077-0.233] unit decrease	Affymetrix [6982258] (imputed)	N
1387	chr9	105146882	105146883	rs10760887	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	9q31.1	NR	rs10760887-G	0.368	6E-6	(IFNalpha_CXCL10_of_CD56dimCD16p)			Illumina [5084123] (imputed)	N
1387	chr9	105163174	105163177	rs35464758	31194736	Tiensuu H	2019-06-13	PLoS Genet	Risk of spontaneous preterm birth and fetal growth associates with fetal SLIT2.	Spontaneous preterm birth (preterm birth)	247 Finnish ancestry infant cases, 419 Finnish ancestry infant controls	NA	9q31.1		rs35464758-?	NR	2E-6		2.82	[1.67-4.80]	Illumina [6778521] (imputed)	N
1388	chr9	105300313	105300314	rs141503599	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		LINC00587	rs141503599-?	NR	1E-13		2.55886	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1389	chr9	105408070	105408071	rs12683479	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-4 levels	8,124 Finnish ancestry individuals	NA	9q31.1	NR	rs12683479-C		7E-6		0.0733	[0.042-0.105] SD units increase	NR [10700000] (imputed)	N
1389	chr9	105436183	105436184	rs117754360	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	9q31.1	NR	rs117754360-C	NR	6E-6	(LME model)	0.98912	[0.56-1.42] unit decrease	NR [NR] (imputed)	N
1389	chr9	105442116	105442117	rs2210533	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	9q31.1	CYLC2	rs2210533-A	0.11	7E-6	(Weight change )	0.03	[NR] kg/y increase	Illumina [899892]	N
1389	chr9	105452663	105452664	rs7858225	28927378	Qian DC	2017-09-19	BMC Genomics	Genome-wide imaging association study implicates functional activity and glial homeostasis of the caudate in smoking addiction.	Caudate activity during reward	106 individuals	NA		NR	rs7858225-G	0.49016	8E-6		0.6040948	[0.35-0.85] unit decrease	Illumina [at least 621854] (imputed)	N
1389	chr9	105488978	105488979	rs10820254	33393196	Soliai M	2021-01-03	Int Forum Allergy Rhinol	Two-stage genome-wide association study of chronic rhinosinusitis and disease subphenotypes highlights mucosal immunity contributing to risk.	Chronic rhinosinusitis	483 European ancestry cases, 2,057 European ancestry controls	NA	9q31.1	LINC00587, CYLC2	rs10820254-G	0.303	5E-6		0.6084	[NR]	Illumina [4528849] (imputed)	N
1389	chr9	105491784	105491785	rs186543356	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (underestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	9q31.1	NR	rs186543356-?	NR	1E-10		6.411	NR z score increase	Illumina [at least 830937] (imputed)	N
1389	chr9	105502497	105502498	rs10990268	22889924	Scharf JM	2012-08-14	Mol Psychiatry	Genome-wide association study of Tourette's syndrome.	Tourette syndrome	778 European ancestry cases, 4,414 European ancestry controls, 242 Ashkenazi Jewish cases, 354 Ashkenazi Jewish controls, 265 French Canadian founder cases, 196 French Canadian founder controls	211 Latin American cases, 285 Latin American controls	9q31.1	intergenic	rs10990268-C	0.12	5E-6		1.29	[NR]	Illumina [484295]	N
1390	chr9	105558899	105558900	rs139055636	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Lean body mass	3,399 whole genome sequenced individuals, 11,801 European ancestry individuals	10,676 European ancestry individuals	9q31.1	RP11-338N12.1	rs139055636-T	0.0014	1E-6		1.1602	[0.69-1.63] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1390	chr9	105559670	105559671	rs183064099	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	9q31.1	intergenic	rs183064099-C	0.010054501010692	6E-6	(G_Collinsella_HB)	1.25003	[0.71-1.79] unit decrease	Illumina [7711310] (imputed)	N
1390	chr9	105573036	105573037	rs7848024	25158072	Yu D	2014-10-31	Am J Psychiatry	Cross-disorder genome-wide analyses suggest a complex genetic relationship between Tourette's syndrome and OCD.	Tourette's syndrome or obsessive-compulsive disorder	1,310 Ashkenazi Jewish, South African Afrikaner ancestry, and other European ancestry OCD cases, 834 Ashkenazi Jewish, French Canadian and other European ancestry Tourette's Syndrome cases, 579 Ashkenazi Jewish, South African Afrikaner ancestry, French Canadian and other European ancestry OCD and Tourette's syndrome cases, 4,975 European ancestry controls, 338 Ashkenazi Jewish controls, 196 French Canadian controls, 158 South African Afrikaner ancestry controls, 290 European ancestry OCD parent-child trios	NA	9q31.1	CYLC2	rs7848024-A	0.27	5E-6		1.19	[NR]	Illumina [7659573] (imputed)	N
1391	chr9	105686084	105686085	rs10820310	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	9q31.1		rs10820310-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1391	chr9	105728626	105728627	rs12000047	30718454	Arnau-Soler A	2019-02-04	Transl Psychiatry	Genome-wide by environment interaction studies of depressive symptoms and psychosocial stress in UK Biobank and Generation Scotland.	Depressive symptoms x dependent stressful life events interaction (2df test)	4,919 European ancestry individuals	NA	9q31.1	NR	rs12000047-A	0.01119	2E-8		0.2313853	NR unit decrease	Illumina [560351]	N
1391	chr9	105728626	105728627	rs12000047	30718454	Arnau-Soler A	2019-02-04	Transl Psychiatry	Genome-wide by environment interaction studies of depressive symptoms and psychosocial stress in UK Biobank and Generation Scotland.	Depressive symptoms x dependent stressful life events interaction (1df test)	4,919 European ancestry individuals	NA	9q31.1	NR	rs12000047-A	0.01119	5E-8		0.267122	NR unit decrease	Illumina [560351]	N
1391	chr9	105735194	105735195	rs1342899	21659360	Wade R	2011-06-09	Haematologica	Association between single nucleotide polymorphism-genotype and outcome of patients with chronic lymphocytic leukemia in a randomized chemotherapy trial.	Response to antineoplastic agents	356 European ancestry cases	380 European ancestry cases	9q31.1	intergenic	rs1342899-?	NR	8E-7		3.13	[1.85-5.26]	Illumina [326385]	N
1391	chr9	105767916	105767917	rs142695278	33637690	He L	2021-02-26	Transl Psychiatry	Exome-wide age-of-onset analysis reveals exonic variants in ERN1 and SPPL2C associated with Alzheimer's disease.	Alzheimer's disease (age of onset) in APOE e4 non-carriers	7,185 European ancestry individuals	5,416 European ancestry individuals	9q31.1		rs142695278-?	NR	2E-6		4.01		NR [98334]	N
1391	chr9	105768598	105768599	rs139949548	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	9q31.1	CYLC2	rs139949548-A	0.0222428471449796	4E-7	(G_Collinsella_HB)	0.948457	[0.58-1.31] unit decrease	Illumina [7711310] (imputed)	N
1392	chr9	105853715	105853716	rs149924309	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	Waist-to-hip ratio adjusted for body mass index	19,695 British ancestry individuals from 6863 families.	NA	9q31.1	intergenic	rs149924309-T	0.0023	4E-8		0.6926119	[0.45-0.94] unit increase	Illumina [24111857] (imputed)	N
1392	chr9	105886379	105886380	rs138411828	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	9q31.1	Intergenic	rs138411828-C	1.0	5E-6	(AA)	0.684	unit increase	Illumina [NR] (imputed)	N
1393	chr9	106010236	106010237	rs10820405	32047268	von Berg J	2020-02-11	Eur J Hum Genet	Alternate approach to stroke phenotyping identifies a genetic risk locus for small vessel stroke.	Large artery stroke (TOAST classification)	2,318 European and African ancestry cases, 28,026 European and unknown ancestry controls	NA	9q31.1	LINC01492	rs10820405-?	NR	1E-6		1.1391652	[1.080-1.200]	Illumina [~ 10156805] (imputed)	N
1393	chr9	106010236	106010237	rs10820405	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Ischemic stroke (large artery atherosclerosis)	4,373 European ancestry cases, 406,111 European ancestry controls, 1,626 East Asian ancestry cases, 28,195 East Asian ancestry controls, 355 South Asian ancestry cases, 6,707 South Asian ancestry controls, 259 African American cases, 15,146 African American controls, 34 Asian ancestry cases, 333 Asian ancestry controls, 41 Latin American cases, 692 Latin American controls	NA	9q31.1	LINC01492	rs10820405-?	NR	2E-6				NR [~ 8000000] (imputed)	N
1393	chr9	106010236	106010237	rs10820405	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Ischemic stroke (large artery atherosclerosis)	4,373 European ancestry cases, 406,111 European ancestry controls	NA	9q31.1	LINC01492	rs10820405-?	NR	5E-8				NR [~ 8000000] (imputed)	N
1393	chr9	106024219	106024220	rs16922670	22005930	Hollingworth P	2011-10-18	Mol Psychiatry	Genome-wide association study of Alzheimer's disease with psychotic symptoms.	Psychosis in Alzheimer's disease	1,039 European ancestry cases with psychosis, 610 European ancestry cases without psychosis, 260 European, African American and Native American ancestry cases with psychosis and 125 European, African American and Native American ancestry cases without psychosis from 264 families	NA	9q31.1	RP11-341A22.2	rs16922670-?	0.14	7E-6		1.63	[NR]	Illumina [1882172] (imputed)	N
1395	chr9	106271444	106271445	rs143769938	32724131	Li QS	2020-07-28	Sci Rep	Genome-wide association study and polygenic risk score analysis of esketamine treatment response.	Response to esketamine in treatment resistant depression	255 European ancestry individuals	NA	9q31.1	NR	rs143769938-?		4E-6		45.7384	[26.58-64.9] unit increase	NR [NR] (imputed)	N
1396	chr9	106320329	106320330	rs3129806	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Monocyte chemoattractant protein-3 levels	843 Finnish ancestry individuals	NA	9q31.1	NR	rs3129806-C		5E-6		0.2001	[0.11-0.29] SD units increase	NR [10700000] (imputed)	N
1396	chr9	106369943	106369944	rs144649413	23319000	Luykx JJ	2013-01-15	Mol Psychiatry	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (MHPG)	up to 398 European ancestry individuals	NA	9q31.1	intergenic	rs144649413-A		9E-6		0.2842	unit decrease	Illumina [5767231] (imputed)	N
1396	chr9	106390196	106390197	rs6479177	34523824	Lakshman Kumar P	2021-09-15	J Cachexia Sarcopenia Muscle	Genetic variation in genes regulating skeletal muscle regeneration and tissue remodelling associated with weight loss in chronic obstructive pulmonary disease.	Weight loss in chronic obstructive pulmonary disease	401 African American individuals	138 African American individuals	9q31.1		rs6479177-A	NR	2E-6		2.3	[1.6-3.3]	Illumina [7629332] (imputed)	N
1398	chr9	106574688	106574689	rs10124625	34964454	Gentiluomo M	2021-11-23	Hum Mol Genet	Genome-wide association study of mitochondrial copy number.	Mitochondrial DNA copy number	6,836 European ancestry individuals	NA	9q31.1	NR	rs10124625-T	0.154	3E-8		0.07	[0.05-0.1] unit increase	Illumina [6374524] (imputed)	N
1398	chr9	106603815	106603816	rs74500135	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	9q31.1	SMC2	rs74500135-T	0.990154	2E-11		0.0670791	[0.047-0.087] unit decrease	Affymetrix [NR] (imputed)	N
1398	chr9	106603815	106603816	rs74500135	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	9q31.1	SMC2	rs74500135-T	0.990174	1E-12		0.0736017	[0.053-0.094] unit decrease	Affymetrix [NR] (imputed)	N
1398	chr9	106611729	106611730	rs114440645	28090653	Liu Y	2017-01-16	Clin Pharmacol Ther	Genome-Wide Study Links PNPLA3 Variant With Elevated Hepatic Transaminase After Acute Lymphoblastic Leukemia Therapy.	Alanine aminotransferase (ALT) levels after remission induction therapy in actute lymphoblastic leukemia (ALL)	up to 488 European ancestry cases, up to 111 African American cases, up to 60 Hispanic cases, up to 56 other ancestry cases	NA	9q31.1	SMC2	rs114440645-G		2E-6	(AA)	9.02	[1.31-62.00]	Affymetrix, Illumina [NR] (imputed)	N
1398	chr9	106675147	106675148	rs718857	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	9q31.1	NR	rs718857-C	0.6384	2E-6	(EA)	0.0311	[0.018-0.044] unit increase	Illumina [~ 11800000] (imputed)	N
1399	chr9	106749789	106749790	rs1576368	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	9q31.1		rs1576368-?	NR	6E-8				NR [~ 8900000] (imputed)	N
1399	chr9	106793725	106793726	rs1536895	21618603	Beaty TH	2011-05-26	Genet Epidemiol	Evidence for gene-environment interaction in a genome wide study of nonsyndromic cleft palate.	Orofacial clefts (maternal alcohol consumption interaction)	272 European ancestry trios, 259 Asian ancestry trios, 19 African ancestry or other ancestry trios	NA	9q31.1	SMC2	rs1536895-C	0.065	3E-7	(Maternal alcohol consumption, 1df)			Illumina [~ 498000]	N
1399	chr9	106797387	106797388	rs10991043	29422604	Klein AP	2018-02-08	Nat Commun	Genome-wide meta-analysis identifies five new susceptibility loci for pancreatic cancer.	Pancreatic cancer	9,040 European ancestry cases, 12,496 European ancestry controls	up to 2,737 cases, up to 4,752 controls	9q31.1	SMC2	rs10991043-C	0.36	7E-6		1.09	[1.05 - 1.13]	Illumina [11381182] (imputed)	N
1400	chr9	106856451	106856452	rs3818625	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	9q31.1		rs3818625-?	NR	6E-8		0.94278	[0.92-0.96]	NR [685523]	N
1400	chr9	106856451	106856452	rs3818625	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Cancer	56,634 White British ancestry cases, 218,196 White British ancestry controls	NA	9q31.1		rs3818625-?	NR	8E-6		0.969693	[0.96-0.98]	NR [688737]	N
1400	chr9	106856451	106856452	rs3818625	33549134	Adolphe C	2021-02-06	Genome Med	Genetic and functional interaction network analysis reveals global enrichment of regulatory T cell genes influencing basal cell carcinoma susceptibility.	Basal cell carcinoma	17,416 European ancestry cases, 375,455 European ancestry controls	NA	9q31.1	SMC2	rs3818625-G	0.449118	2E-9		0.06542574	[0.044-0.087] unit decrease	Affymetrix [7260263] (imputed)	N
1400	chr9	106856691	106856692	rs10820600	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9q31.1		rs10820600-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1400	chr9	106856792	106856793	rs4742903	32424353	Zhang H	2020-05-18	Nat Genet	Genome-wide association study identifies 32 novel breast cancer susceptibility loci from overall and subtype-specific analyses.	Breast cancer	133,384 European ancestry cases, 113,789 European ancestry controls	NA	9q31.1	NR	rs4742903-C	0.56	3E-8		1.0309278	[1.02-1.04]	Illumina [~ 10800000] (imputed)	N
1400	chr9	106856792	106856793	rs4742903	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	9q31.1	NR	rs4742903-C	0.5563	2E-7	(EA)	0.0325	[0.02-0.045] unit increase	Illumina [~ 11800000] (imputed)	N
1400	chr9	106856792	106856793	rs4742903	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	High-grade serous ovarian cancer	13,037 European ancestry cases, 40,941 European ancestry controls	NA	9q31.1	NR	rs4742903-T	0.563	6E-6		1.0740868	[1.04130585570624-1.10789968145028]	Illumina [11595112] (imputed)	N
1400	chr9	106858191	106858192	rs3739737	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Keratinocyte cancer (MTAG)	at least 18,538 European ancestry cases, at least 340,302 European ancestry controls	NA	9q31.1	SMC2	rs3739737-G	0.549665	4E-8		1.05	[1.03-1.07]	Affymetrix [7600000] (imputed)	N
1400	chr9	106861280	106861281	rs10820601	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	9q31.1		rs10820601-A	NR	3E-8		0.0097	[0.0064-0.013] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
1400	chr9	106865691	106865692	rs7859034	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Basal cell carcinoma	31,787 European ancestry cases, 619,351 European ancestry controls	NA	9q31.1	SMC2	rs7859034-T	0.563089	9E-11		1.06	[1.04-1.08]	Affymetrix, Illumina [up to 9061544] (imputed)	N
1400	chr9	106865691	106865692	rs7859034	30541042	Walsh N	2018-12-12	J Natl Cancer Inst	Agnostic Pathway/Gene Set Analysis of Genome-Wide Association Data Identifies Associations for Pancreatic Cancer.	Pancreatic ductal adenocarcinoma	9,040 European ancestry cases, 12,496 European ancestry controls	NA	9q31.1	SMC2	rs7859034-G	NR	3E-7		1.1111112	[1.08-1.16]	NR [NR]	N
1400	chr9	106887580	106887581	rs2417487	29422604	Klein AP	2018-02-08	Nat Commun	Genome-wide meta-analysis identifies five new susceptibility loci for pancreatic cancer.	Pancreatic cancer	9,040 European ancestry cases, 12,496 European ancestry controls	up to 2,737 cases, up to 4,752 controls	9q31.1	SMC2	rs2417487-A	0.44	6E-7		1.09	[1.05-1.12]	Illumina [11381182] (imputed)	N
1400	chr9	106906358	106906358	rs397706368	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Skin cancer	25,928 European ancestry cases, 466,275 European ancestry controls, 154 East Asian ancestry cases, 178,572 East Asian ancestry controls	NA	9q31.1		rs397706368-CTA	NR	7E-10		0.0603	[0.041-0.08] unit increase	Affymetrix, Illumina [25845421] (imputed)	N
1400	chr9	106916915	106916916	rs7852515	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Non-melanoma skin cancer	5,912 European ancestry cases, 181,740 European ancestry controls		9q31.1	NR	rs7852515-G	NR	2E-6		1.0947338	[1.05-1.14]	Affymetrix [5734850] (imputed)	N
1401	chr9	106959242	106959243	rs12377116	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	9q31.1		rs12377116-?	NR	4E-9		1.06669	[1.05-1.09]	NR [685523]	N
1401	chr9	106969042	106969043	rs1349375	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Sensorimotor dexterity	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	9q31.1	SMC2	rs1349375-C	NR	2E-7		0.4453825	[0.25-0.64] unit decrease	Illumina [> 6200000] (imputed)	N
1401	chr9	106997231	106997268	rs536142737	33574277	Kawai Y	2021-02-11	NPJ Genom Med	Mapping of susceptible variants for cold medicine-related Stevens-Johnson syndrome by whole-genome resequencing.	Cold medicine-related Stevens-Johnson syndrome/toxic epidermal necrolysis (SJS/TEN) with severe ocular complications	133 Japanese ancestry cases, 418 Japanese ancestry controls	NA	9q31.1		rs536142737-A	0.1098	2E-8		4.636		Illumina [7608150]	N
1401	chr9	107004654	107004654	rs780739015	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Pork consumption	335,576 European ancestry individuals	NA	9q31.1	SMC2	rs780739015-?	NR	4E-9		0.00115565	[-0.00367-0.00598] unit increase	Affymetrix [25921788] (imputed)	N
1401	chr9	107004654	107004654	rs780739015	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Oily fish consumption	335,576 European ancestry individuals	NA	9q31.1	SMC2	rs780739015-?	NR	4E-9		0.0144293	[0.0096-0.0192] unit increase	Affymetrix [25921788] (imputed)	N
1401	chr9	107011116	107011117	rs11290052	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	9q31.1	NR	rs11290052-T	0.4068	8E-6	(EA)	0.0323	[0.018-0.047] unit increase	Illumina [~ 11800000] (imputed)	N
1401	chr9	107024635	107024636	rs17376734	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	9q31.1	NR	rs17376734-?	NR	4E-6				Affymetrix [NR]	N
1401	chr9	107026811	107026812	rs1450679	24483146	Li L	2014-02-01	BMC Genomics	Discovery of genetic biomarkers contributing to variation in drug response of cytidine analogues using human lymphoblastoid cell lines.	Response to cytadine analogues (cytosine arabinoside)	60 European ancestry lymphoblastoid cell lines, 54 African American lymphoblastoid cell lines, 60 Han Chinese ancestry lymphoblastoid cell lines	NA	9q31.1	SMC2L1	rs1450679-?		5E-7				Affymetrix, Illumina [1348798]	N
1402	chr9	107093414	107093415	rs79286228	29532581	Hallfors J	2018-03-13	Addict Biol	Genome-wide association study in Finnish twins highlights the connection between nicotine addiction and neurotrophin signaling pathway.	Nicotine withdrawal symptom count	1,703 Finnish ancestry ever smoker individuals from up to 739 families	NA	9q31.1	NR	rs79286228-A	0.04	4E-6		0.9	[0.53-1.27] unit increase	Illumina [9469131] (imputed)	N
1402	chr9	107138969	107138970	rs115357105	29071344	Zhou H	2017-10-25	JAMA Psychiatry	Genetic Risk Variants Associated With Comorbid Alcohol Dependence and Major Depression.	Major depression and alcohol dependence	3,041 African American individuals, 1,618 European ancestry individuals	1,612 African American individuals, 1,551 European ancestry individuals	9q31.1	intergenic	rs115357105-G	NR	9E-7	(AA)	1.132	unit increase	Illumina [at least 5086170] (imputed)	N
1403	chr9	107288994	107288995	rs41277753	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9q31.1	NR	rs41277753-G	0.01568	3E-8	(NUCB2)	0.01323	NR unit increase	Illumina [1671387] (imputed)	N
1403	chr9	107289384	107289385	rs202207863	33692975	Buda P	2021-02-22	Front Pediatr	Association Between rs12037447, rs146732504, rs151078858, rs55723436, and rs6094136 Polymorphisms and Kawasaki Disease in the Population of Polish Children.	Kawasaki disease	119 European ancestry cases, 6,071 European ancestry controls	NA	9q31.1	OR13C4	rs202207863-T	0.001071	9E-7		11.91	3.372-42.07	Illumina [164395]	N
1403	chr9	107290450	107290451	rs1403810	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Middle temporal gyrus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	9q31.1	NR	rs1403810-?		4E-7				Illumina [4322238] (imputed)	N
1403	chr9	107324199	107324200	rs13287980	23263486	Kottgen A	2012-12-23	Nat Genet	Genome-wide association analyses identify 18 new loci associated with serum urate concentrations.	Gout	2,115 European ancestry cases, 67,259 European ancestry controls	1,036 European ancestry cases	9q31.1	NR	rs13287980-A	0.1271	1E-6		0.2354	[0.14-0.33] unit increase	Affymetrix, Illumina [2538056] (imputed)	N
1404	chr9	107361110	107361111	rs6479259	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	9q31.1	OR13C5, NIPSNAP3A, NIPSNAP3B	rs6479259-T	0.73	2E-8		0.056	[0.036-0.076] unit decrease	Affymetrix, Illumina [10537485] (imputed)	N
1404	chr9	107375247	107375248	rs77038697	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Antisaccade task score	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	9q31.1	OR13C9	rs77038697-A	NR	3E-8		0.23528619	[0.16-0.31] unit decrease	Illumina [> 6200000] (imputed)	N
1404	chr9	107396923	107396924	rs189889864	28753643	Yeo A	2017-07-28	PLoS One	Pharmacogenetic meta-analysis of baseline risk factors, pharmacodynamic, efficacy and tolerability endpoints from two large global cardiovascular outcomes trials for darapladib.	Lipoprotein phospholipase A2 activity in cardiovascular disease	22,156 European, Asian, African, Arabic, Native American, Pacific Islander and other ancestry	NA	9q31.1	intergenic	rs189889864-A	0.0002	9E-9		91.81	[60.53-123.09] (nmol/min/ml) increase	Affymetrix, Illumina [13572687] (imputed)	N
1404	chr9	107422610	107422611	rs13300004	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	9q31.1	OR13D1	rs13300004-A	0.986697	1E-8		0.0487788	[0.032-0.066] unit increase	Affymetrix [NR] (imputed)	N
1404	chr9	107422610	107422611	rs13300004	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	9q31.1	OR13D1	rs13300004-A	0.986682	1E-9		0.0535297	[0.036-0.071] unit increase	Affymetrix [NR] (imputed)	N
1404	chr9	107446361	107446362	rs10820706	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	CTACK levels	3,631 Finnish ancestry individuals	NA	9q31.1	NR	rs10820706-G	NR	9E-6		0.1731	[0.096-0.25] SD units decrease	NR [10700000] (imputed)	N
1404	chr9	107453326	107453327	rs10761071	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	9q31.1	NIPSNAP3A	rs10761071-?	NR	2E-6	(serotonin)	0.21013379	[0.12-0.3] unit increase	Affymetrix [at least 2500000] (imputed)	N
1404	chr9	107473897	107473898	rs74560333	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	9q31.1	NR	rs74560333-A	NR	2E-9		0.0418	[0.028-0.056] unit increase	Affymetrix [9000000] (imputed)	N
1404	chr9	107475294	107475296	rs202069793	30487263	Pollack S	2018-11-28	Diabetes	Multiethnic Genome-wide Association Study of Diabetic Retinopathy using Liability Threshold Modeling of Duration of Diabetes and Glycemic Control.	Diabetic retinopathy (moderate NPDR and PDR)	644 European ancestry cases, 1,970 European ancestry controls, 768 African American cases, 941 African American controls	2,388 East Asian ancestry cases, 6,219 East Asian ancestry controls, 1,658 European ancestry cases, 3,019 European ancestry controls, 1,014 Hispanic cases, 1,240 Hispanic controls	9q31.1	NR	rs202069793-?	NR	6E-8	(AA, adjusted for duration of diabetes and glycemic control)	1.39	[NR]	Affymetrix, Illumina [NR] (imputed)	N
1404	chr9	107475894	107475895	rs76901408	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mumps	31,227 European ancestry cases, 54,153 European ancestry controls	NA	9q31.1	NR	rs76901408-?	NR	5E-6		0.9101	[0.52-1.3] unit increase	Illumina [at least 560000] (imputed)	N
1405	chr9	107493296	107493297	rs12348106	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota (beta diversity)	858 Metropolitan French ancestry individuals	NA	9q31.1	NR	rs12348106-T	0.002	3E-10	(Jaccard metric)	6.186966	NR z-score increase	Illumina [5293637] (imputed)	N
1405	chr9	107512376	107512378	rs540899977	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	9q31.1	NIPSNAP3A	rs540899977-A	0.002	6E-6		0.4849	[0.28-0.69] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1405	chr9	107515213	107515214	rs2274870	24483146	Li L	2014-02-01	BMC Genomics	Discovery of genetic biomarkers contributing to variation in drug response of cytidine analogues using human lymphoblastoid cell lines.	Response to cytidine analogues (gemcitabine)	60 European ancestry lymphoblastoid cell lines, 54 African American lymphoblastoid cell lines, 60 Han Chinese ancestry lymphoblastoid cell lines	NA	9q31.1	NIPSNAP3A	rs2274870-?		4E-6				Affymetrix, Illumina [1348798]	N
1405	chr9	107515813	107515814	rs4743758	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	High density lipoprotein cholesterol levels	70,657 Japanese ancestry individuals	NA	9q31.1	NR	rs4743758-?	NR	2E-10		0.03851	[0.027-0.05] unit decrease novel	Illumina [6108953] (imputed)	N
1405	chr9	107531955	107531956	rs2472476	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	9q31.1	NIPSNAP3B	rs2472476-G	0.267	3E-6	(GLU )	0.03	[NR] mg/dL increase	Illumina [899892]	N
1405	chr9	107549826	107549827	rs62566032	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	9q31.1	NR	rs62566032-A	NR	3E-11		0.0269	[0.019-0.035] unit increase	Affymetrix [9000000] (imputed)	N
1405	chr9	107549826	107549827	rs62566032	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	9q31.1	NR	rs62566032-A	NR	2E-14		0.0325	[0.024-0.041] unit increase	Affymetrix [9000000] (imputed)	N
1405	chr9	107549826	107549827	rs62566032	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	9q31.1	NR	rs62566032-A	NR	1E-18		0.0373	[0.029-0.046] unit increase	Affymetrix [9000000] (imputed)	N
1405	chr9	107551537	107551538	rs2297406	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	9q31.1	NR	rs2297406-T	NR	5E-9		0.0158	[0.011-0.021] unit increase	Affymetrix [9000000] (imputed)	N
1405	chr9	107551537	107551538	rs2297406	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	9q31.1	NR	rs2297406-T	NR	1E-12		0.0193	[0.014-0.025] unit increase	Affymetrix [9000000] (imputed)	N
1405	chr9	107555450	107555451	rs908256532	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	HDL cholesterol levels	400,754 European ancestry individuals	NA	9q31.1		rs908256532-?	NR	1E-13		1.92489	[1.4-2.45] unit decrease	NR [9800000] (imputed)	N
1405	chr9	107555450	107555451	rs908256532	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Apolipoprotein A1 levels	398,508 European ancestry individuals	NA	9q31.1		rs908256532-?	NR	6E-13		1.88618	[1.35-2.42] unit decrease	NR [9800000] (imputed)	N
1405	chr9	107555710	107555711	rs4149327	22179738	Lai HM	2011-12-16	Rheumatology (Oxford)	Gout and type 2 diabetes have a mutual inter-dependent effect on genetic risk factors and higher incidences.	Gout	20 Han Chinese ancestry male gout cases, 42 Han Chinese ancestry male controls	NA	9q31.1	ABCA1	rs4149327-?		1E-7				Illumina [479403]	N
1405	chr9	107556775	107556776	rs146292819	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Total cholesterol levels	437,878 European ancestry individuals	NA	9q31.1		rs146292819-?	NR	5E-12		0.420626	[0.3-0.54] unit decrease	NR [9800000] (imputed)	N
1405	chr9	107556775	107556776	rs146292819	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	HDL cholesterol levels	400,754 European ancestry individuals	NA	9q31.1		rs146292819-?	NR	4E-86		1.08189	[0.97-1.19] unit decrease	NR [9800000] (imputed)	N
1405	chr9	107556775	107556776	rs146292819	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Apolipoprotein A1 levels	398,508 European ancestry individuals	NA	9q31.1		rs146292819-?	NR	4E-90		1.1652	[1.05-1.28] unit decrease	NR [9800000] (imputed)	N
1405	chr9	107558470	107558471	rs760346286	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	HDL cholesterol levels	400,754 European ancestry individuals	NA	9q31.1		rs760346286-?	NR	5E-23		0.667936	[0.53-0.8] unit increase	NR [9800000] (imputed)	N
1405	chr9	107558470	107558471	rs760346286	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Apolipoprotein A1 levels	398,508 European ancestry individuals	NA	9q31.1		rs760346286-?	NR	8E-21		0.647643	[0.5-0.79] unit increase	NR [9800000] (imputed)	N
1405	chr9	107559058	107559059	rs2777799	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	HDL cholesterol levels	115,082 European ancestry individuals	NA	9q31.1		rs2777799-G	0.104634	1E-10		0.0387861	[0.027-0.051] unit decrease	NR [11722792] (imputed)	N
1405	chr9	107559058	107559059	rs2777799	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	9q31.1		rs2777799-G	0.104634	3E-10		0.0380085	[0.026-0.05] unit decrease	NR [11722792] (imputed)	N
1405	chr9	107559058	107559059	rs2777799	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	9q31.1	NR	rs2777799-A	NR	5E-18		0.0334	[0.026-0.041] unit increase	Affymetrix [9000000] (imputed)	N
1405	chr9	107559058	107559059	rs2777799	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	9q31.1	NR	rs2777799-A	NR	2E-28		0.0445	[0.037-0.052] unit increase	Affymetrix [9000000] (imputed)	N
1405	chr9	107559058	107559059	rs2777799	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	9q31.1	NR	rs2777799-A	NR	9E-36		0.0504	[0.043-0.058] unit increase	Affymetrix [9000000] (imputed)	N
1405	chr9	107559857	107559857	rs141575869	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	9q31.1		rs141575869-CG	NR	4E-9		0.0136	[0.0091-0.0181] unit increase	Affymetrix, Illumina [20529698] (imputed)	N
1405	chr9	107560783	107560784	rs150125857	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	HDL cholesterol levels	400,754 European ancestry individuals	NA	9q31.1		rs150125857-?	NR	5E-35		0.496319	[0.42-0.58] unit decrease	NR [9800000] (imputed)	N
1405	chr9	107560783	107560784	rs150125857	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Apolipoprotein A1 levels	398,508 European ancestry individuals	NA	9q31.1		rs150125857-?	NR	2E-35		0.508871	[0.43-0.59] unit decrease	NR [9800000] (imputed)	N
1405	chr9	107560783	107560784	rs150125857	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	9q31.1	NR	rs150125857-T	NR	3E-22		0.4661	[0.37-0.56] unit decrease	Affymetrix [9000000] (imputed)	N
1405	chr9	107560783	107560784	rs150125857	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	9q31.1	NR	rs150125857-T	NR	2E-23		0.4801	[0.39-0.57] unit decrease	Affymetrix [9000000] (imputed)	N
1405	chr9	107562144	107562145	rs765930445	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Total cholesterol levels	437,878 European ancestry individuals	NA	9q31.1		rs765930445-?	NR	2E-10		0.615068	[0.42-0.81] unit decrease	NR [9800000] (imputed)	N
1405	chr9	107562144	107562145	rs765930445	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	HDL cholesterol levels	400,754 European ancestry individuals	NA	9q31.1		rs765930445-?	NR	8E-30		1.06614	[0.88-1.25] unit decrease	NR [9800000] (imputed)	N
1405	chr9	107562144	107562145	rs765930445	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Apolipoprotein A1 levels	398,508 European ancestry individuals	NA	9q31.1		rs765930445-?	NR	1E-28		1.06997	[0.88-1.26] unit decrease	NR [9800000] (imputed)	N
1405	chr9	107562556	107562557	rs2740480	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	High density lipoprotein cholesterol levels	70,657 Japanese ancestry individuals	NA	9q31.1	NR	rs2740480-?	NR	2E-20		0.04943	[0.039-0.06] unit decrease novel	Illumina [6108953] (imputed)	N
1405	chr9	107562803	107562804	rs2230808	32752121	Nedoszytko B	2020-07-31	Int J Mol Sci	Results from a Genome-Wide Association Study (GWAS) in Mastocytosis Reveal New Gene Polymorphisms Associated with WHO Subgroups.	Systemic mastocytosis	93 European ancestry cases, 5,606 European ancestry controls	NA	9q31.1	ABCA1	rs2230808-A	0.2469	1E-7		2.187	[1.89-2.48]	Illumina [281811]	N
1405	chr9	107563436	107563437	rs2740479	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	9q31.1	NR	rs2740479-G	0.321499	2E-12		0.0157319	[0.011-0.02] unit decrease	NR [NR]	N
1405	chr9	107563602	107563603	rs2245793	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total phospholipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	9q31.1		rs2245793-T	0.0982086	5E-11		0.0433472	[0.03-0.056] unit decrease	NR [11722792] (imputed)	N
1405	chr9	107563602	107563603	rs2245793	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium HDL	115,082 European ancestry individuals	NA	9q31.1		rs2245793-T	0.0982086	6E-13		0.046247	[0.034-0.059] unit decrease	NR [11722792] (imputed)	N
1405	chr9	107563602	107563603	rs2245793	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	9q31.1		rs2245793-T	0.0982086	5E-8		0.0371769	[0.024-0.051] unit decrease	NR [11722792] (imputed)	N
1405	chr9	107563602	107563603	rs2245793	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in HDL	115,082 European ancestry individuals	NA	9q31.1		rs2245793-T	0.0982086	3E-14		0.0471985	[0.035-0.059] unit decrease	NR [11722792] (imputed)	N
1405	chr9	107563602	107563603	rs2245793	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total concentration of lipoprotein particles	115,082 European ancestry individuals	NA	9q31.1		rs2245793-T	0.0982086	4E-16		0.0530158	[0.04-0.066] unit decrease	NR [11722792] (imputed)	N
1405	chr9	107563602	107563603	rs2245793	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholines levels	115,006 European ancestry individuals	NA	9q31.1		rs2245793-T	0.0981992	2E-12		0.0457621	[0.033-0.059] unit decrease	NR [11722792] (imputed)	N
1405	chr9	107563602	107563603	rs2245793	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Polyunsaturated fatty acid levels	115,006 European ancestry individuals	NA	9q31.1		rs2245793-T	0.0981992	3E-8		0.0372787	[0.024-0.05] unit decrease	NR [11722792] (imputed)	N
1405	chr9	107563602	107563603	rs2245793	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium HDL	115,082 European ancestry individuals	NA	9q31.1		rs2245793-T	0.0982086	1E-11		0.0437303	[0.031-0.056] unit decrease	NR [11722792] (imputed)	N
1405	chr9	107563602	107563603	rs2245793	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in HDL	115,082 European ancestry individuals	NA	9q31.1		rs2245793-T	0.0982086	4E-13		0.0454275	[0.033-0.058] unit decrease	NR [11722792] (imputed)	N
1405	chr9	107563602	107563603	rs2245793	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphoglycerides levels	115,006 European ancestry individuals	NA	9q31.1		rs2245793-T	0.0981992	5E-12		0.0452232	[0.032-0.058] unit decrease	NR [11722792] (imputed)	N
1405	chr9	107563602	107563603	rs2245793	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphatidylcholine levels	115,006 European ancestry individuals	NA	9q31.1		rs2245793-T	0.0981992	6E-13		0.0466159	[0.034-0.059] unit decrease	NR [11722792] (imputed)	N
1405	chr9	107563602	107563603	rs2245793	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-6 fatty acid levels	115,006 European ancestry individuals	NA	9q31.1		rs2245793-T	0.0981992	4E-9		0.039775	[0.027-0.053] unit decrease	NR [11722792] (imputed)	N
1405	chr9	107563602	107563603	rs2245793	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small HDL	115,082 European ancestry individuals	NA	9q31.1		rs2245793-T	0.0982086	2E-13		0.049965	[0.037-0.063] unit decrease	NR [11722792] (imputed)	N
1405	chr9	107563602	107563603	rs2245793	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	9q31.1		rs2245793-T	0.0982086	3E-14		0.047983	[0.036-0.06] unit decrease	NR [11722792] (imputed)	N
1405	chr9	107563602	107563603	rs2245793	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium HDL particles	115,082 European ancestry individuals	NA	9q31.1		rs2245793-T	0.0982086	4E-14		0.0482716	[0.036-0.061] unit decrease	NR [11722792] (imputed)	N
1405	chr9	107563602	107563603	rs2245793	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of HDL particles	115,082 European ancestry individuals	NA	9q31.1		rs2245793-T	0.0982086	3E-16		0.0531561	[0.04-0.066] unit decrease	NR [11722792] (imputed)	N
1405	chr9	107563602	107563603	rs2245793	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium HDL	115,082 European ancestry individuals	NA	9q31.1		rs2245793-T	0.0982086	3E-12		0.0447713	[0.032-0.057] unit decrease	NR [11722792] (imputed)	N
1405	chr9	107563602	107563603	rs2245793	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	9q31.1		rs2245793-T	0.0982086	9E-13		0.0456166	[0.033-0.058] unit decrease	NR [11722792] (imputed)	N
1405	chr9	107563602	107563603	rs2245793	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein A1 levels	115,082 European ancestry individuals	NA	9q31.1		rs2245793-T	0.0982086	6E-16		0.051243	[0.039-0.064] unit decrease	NR [11722792] (imputed)	N
1405	chr9	107563602	107563603	rs2245793	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x short total sleep time interaction (2df test)	3,007 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,474 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, up to 11,901 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,567 European ancestry controls, 4,047 Hispanic/Latino controls	up to 221 African American short sleepers, 629 East Asian ancestry short sleepers, up to 9,585 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 2,504 East Asian ancestry controls, up to 38,027 European ancestry controls, 10,061 Hispanic controls	9q31.1	ABCA1	rs2245793-?	NR	4E-11		0.008342	[0.0056-0.0111] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
1405	chr9	107568704	107568705	rs2066716	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large HDL	115,082 European ancestry individuals	NA	9q31.1		rs2066716-C	0.917515	5E-10		0.0456815	[0.031-0.06] unit decrease	NR [11722792] (imputed)	N
1405	chr9	107568704	107568705	rs2066716	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large HDL	115,082 European ancestry individuals	NA	9q31.1		rs2066716-C	0.917515	2E-12		0.0502055	[0.036-0.064] unit decrease	NR [11722792] (imputed)	N
1405	chr9	107568704	107568705	rs2066716	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	9q31.1		rs2066716-C	0.917515	4E-13		0.0518739	[0.038-0.066] unit increase	NR [11722792] (imputed)	N
1405	chr9	107568704	107568705	rs2066716	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	9q31.1		rs2066716-C	0.917515	5E-11		0.0493644	[0.035-0.064] unit increase	NR [11722792] (imputed)	N
1405	chr9	107568704	107568705	rs2066716	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	9q31.1		rs2066716-C	0.917515	8E-12		0.0488367	[0.035-0.063] unit decrease	NR [11722792] (imputed)	N
1405	chr9	107568704	107568705	rs2066716	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	9q31.1		rs2066716-C	0.917515	5E-12		0.0461266	[0.033-0.059] unit decrease	NR [11722792] (imputed)	N
1405	chr9	107568704	107568705	rs2066716	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large HDL particles	115,082 European ancestry individuals	NA	9q31.1		rs2066716-C	0.917515	2E-8		0.0382857	[0.025-0.052] unit decrease	NR [11722792] (imputed)	N
1405	chr9	107569336	107569337	rs2777802	26993346	Schott JM	2016-03-15	Alzheimers Dement	Genetic risk factors for the posterior cortical atrophy variant of Alzheimer's disease.	Posterior cortical atrophy and Alzheimer's disease	293 cases, 10,547 healthy controls	NA	9q31.1	Intergenic	rs2777802-?	NR	6E-6		1.4778666	[NR]	Illumina [~ 5900000] (imputed)	N
1405	chr9	107570713	107570714	rs2740476	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Total cholesterol levels	128,305 Japanese ancestry individuals	NA	9q31.1	NR	rs2740476-?	NR	6E-9		0.02336	[0.015-0.031] unit decrease novel	Illumina [6108953] (imputed)	N
1405	chr9	107571207	107571208	rs2777803	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large HDL	115,082 European ancestry individuals	NA	9q31.1		rs2777803-G	0.100812	3E-9		0.0356726	[0.024-0.048] unit decrease	NR [11722792] (imputed)	N
1405	chr9	107571207	107571208	rs2777803	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in HDL	115,082 European ancestry individuals	NA	9q31.1		rs2777803-G	0.100812	4E-14		0.0459982	[0.034-0.058] unit decrease	NR [11722792] (imputed)	N
1405	chr9	107571207	107571208	rs2777803	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	9q31.1		rs2777803-G	0.100812	5E-10		0.0373543	[0.026-0.049] unit decrease	NR [11722792] (imputed)	N
1405	chr9	107571207	107571208	rs2777803	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x long total sleep time interaction (2df test)	2,933 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, up to 7,870 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,975 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 32,171 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 616 East Asian ancestry long sleepers, up to 9,486 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 929 African American controls, 2,517 East Asian ancestry controls, up to 38,126 European ancestry controls, 10,063 Hispanic controls	9q31.1	ABCA1	rs2777803-?	NR	4E-11		0.008152	[0.0053-0.011] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1405	chr9	107571745	107571746	rs1371879163	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Apolipoprotein A1 levels	398,508 European ancestry individuals	NA	9q31.1		rs1371879163-?	NR	3E-10		1.15296	[0.76-1.54] unit decrease	NR [9800000] (imputed)	N
1405	chr9	107573079	107573080	rs375247413	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	HDL cholesterol levels	400,754 European ancestry individuals	NA	9q31.1		rs375247413-?	NR	7E-11		1.6114	[1.09-2.13] unit decrease	NR [9800000] (imputed)	N
1405	chr9	107573079	107573080	rs375247413	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Apolipoprotein A1 levels	398,508 European ancestry individuals	NA	9q31.1		rs375247413-?	NR	7E-11		1.69886	[1.16-2.24] unit decrease	NR [9800000] (imputed)	N
1405	chr9	107574867	107574868	rs762770081	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	HDL cholesterol levels	400,754 European ancestry individuals	NA	9q31.1		rs762770081-?	NR	1E-10		1.2528	[0.84-1.67] unit decrease	NR [9800000] (imputed)	N
1405	chr9	107574867	107574868	rs762770081	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Apolipoprotein A1 levels	398,508 European ancestry individuals	NA	9q31.1		rs762770081-?	NR	1E-11		1.40178	[0.97-1.83] unit decrease	NR [9800000] (imputed)	N
1405	chr9	107578058	107578059	rs71511786	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	9q31.1	NR	rs71511786-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
1405	chr9	107578619	107578620	rs76881554	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	HDL cholesterol levels	400,754 European ancestry individuals	NA	9q31.1		rs76881554-?	NR	7E-21		0.211585	[0.17-0.26] unit decrease	NR [9800000] (imputed)	N
1405	chr9	107578619	107578620	rs76881554	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Apolipoprotein A1 levels	398,508 European ancestry individuals	NA	9q31.1		rs76881554-?	NR	4E-16		0.193813	[0.15-0.24] unit decrease	NR [9800000] (imputed)	N
1405	chr9	107578619	107578620	rs76881554	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	9q31.1	NR	rs76881554-A	NR	4E-13		0.2083	[0.15-0.26] unit decrease	Affymetrix [9000000] (imputed)	N
1405	chr9	107578619	107578620	rs76881554	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	9q31.1	NR	rs76881554-A	NR	1E-11		0.194	[0.14-0.25] unit decrease	Affymetrix [9000000] (imputed)	N
1405	chr9	107579631	107579632	rs33918808	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	9q31.1	NR	rs33918808-G	NR	2E-11		0.0451	[0.032-0.058] unit increase	Affymetrix [9000000] (imputed)	N
1405	chr9	107579631	107579632	rs33918808	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	9q31.1	NR	rs33918808-G	NR	1E-14		0.0542	[0.04-0.068] unit increase	Affymetrix [9000000] (imputed)	N
1405	chr9	107579631	107579632	rs33918808	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	9q31.1	NR	rs33918808-G	NR	5E-12		0.0489	[0.035-0.063] unit increase	Affymetrix [9000000] (imputed)	N
1405	chr9	107579879	107579880	rs2297402	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	9q31.1	ABCA1	rs2297402-C	0.976241	7E-26		0.0684609	[0.056-0.081] unit increase	Affymetrix [NR] (imputed)	N
1405	chr9	107579879	107579880	rs2297402	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	9q31.1	ABCA1	rs2297402-C	0.976213	1E-25		0.0700364	[0.057-0.083] unit increase	Affymetrix [NR] (imputed)	N
1405	chr9	107581110	107581111	rs28933692	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	HDL cholesterol levels	400,754 European ancestry individuals	NA	9q31.1		rs28933692-?	NR	1E-9		1.47059	[0.98-1.96] unit decrease	NR [9800000] (imputed)	N
1405	chr9	107581110	107581111	rs28933692	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Apolipoprotein A1 levels	398,508 European ancestry individuals	NA	9q31.1		rs28933692-?	NR	3E-10		1.57053	[1.07-2.07] unit decrease	NR [9800000] (imputed)	N
1405	chr9	107586237	107586238	rs35093463	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	9q31.1	ABCA1	rs35093463-?	NR	3E-13		0.054696	[0.04-0.069] unit increase	Illumina [4804024] (imputed)	N
1405	chr9	107586237	107586238	rs35093463	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 142,336 Japanese ancestry controls	NA	9q31.1	ABCA1	rs35093463-?	NR	4E-9		0.0605532	[0.04-0.081] unit increase	Illumina [19707525] (imputed)	N
1405	chr9	107586752	107586753	rs2066714	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	9q31.1	ABCA1	rs2066714-T	0.871227	2E-11		0.0209673	[0.015-0.027] unit decrease	Affymetrix [NR] (imputed)	N
1405	chr9	107586752	107586753	rs2066714	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	9q31.1	ABCA1	rs2066714-T	0.87138	4E-60		0.0465057	[0.041-0.052] unit decrease	Affymetrix [NR] (imputed)	N
1405	chr9	107586752	107586753	rs2066714	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	9q31.1	ABCA1	rs2066714-T	0.87145	1E-76		0.0542774	[0.049-0.06] unit decrease	Affymetrix [NR] (imputed)	N
1405	chr9	107588169	107588171	rs780742201	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	HDL cholesterol levels	400,754 European ancestry individuals	NA	9q31.1		rs780742201-?	NR	3E-22		0.86611	[0.69-1.04] unit decrease	NR [9800000] (imputed)	N
1405	chr9	107588169	107588171	rs780742201	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Apolipoprotein A1 levels	398,508 European ancestry individuals	NA	9q31.1		rs780742201-?	NR	6E-24		0.912365	[0.73-1.09] unit decrease	NR [9800000] (imputed)	N
1405	chr9	107588327	107588328	rs3824477	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large HDL	115,082 European ancestry individuals	NA	9q31.1		rs3824477-G	0.970962	5E-8		0.0654999	[0.042-0.089] unit decrease	NR [11722792] (imputed)	N
1405	chr9	107588327	107588328	rs3824477	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large HDL	115,082 European ancestry individuals	NA	9q31.1		rs3824477-G	0.970962	4E-9		0.0687557	[0.046-0.092] unit decrease	NR [11722792] (imputed)	N
1405	chr9	107588327	107588328	rs3824477	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	9q31.1		rs3824477-G	0.970962	4E-24		0.124447	[0.1-0.15] unit increase	NR [11722792] (imputed)	N
1405	chr9	107588327	107588328	rs3824477	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Linoleic acid levels	115,006 European ancestry individuals	NA	9q31.1		rs3824477-G	0.970956	5E-9		0.0707328	[0.047-0.094] unit decrease	NR [11722792] (imputed)	N
1405	chr9	107588327	107588328	rs3824477	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	9q31.1		rs3824477-G	0.970962	4E-8		0.0666433	[0.043-0.09] unit increase	NR [11722792] (imputed)	N
1405	chr9	107588327	107588328	rs3824477	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	9q31.1		rs3824477-G	0.970962	7E-18		0.106244	[0.082-0.13] unit decrease	NR [11722792] (imputed)	N
1405	chr9	107588327	107588328	rs3824477	27668658	Iotchkova V	2016-11-01	Nat Genet	Discovery and refinement of genetic loci associated with cardiometabolic risk using dense imputation maps.	Cardiometabolic and hematological traits	up to 35,981 European ancestry individuals	up to 102,505 European ancestry individuals	9q31.1	ABCA1	rs3824477-A		1E-13	(HDL)	0.026	[-0.21312-0.26512] unit increase	Affymetrix, Illumina [17000000] (imputed)	N
1405	chr9	107588776	107588777	rs4149311	23049088	Meng W	2012-10-09	Invest Ophthalmol Vis Sci	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		9q31.1	ABCA1	rs4149311-?	0.134	9E-6			[NR]	Affymetrix, Illumina [152234]	N
1405	chr9	107589133	107589134	rs4149310	34592243	Nusinovici S	2021-09-27	Ophthalmology	High-density lipoprotein 3 cholesterol and primary open-angle glaucoma: metabolomics and mendelian randomization analyses.	High-density lipoprotein 3 cholesterol levels	2,308 Chinese ancestry individuals, 2,528 Indian ancestry individuals, 2,521 Malays ancestry individuals, 10,984 Finnish ancestry individuals	NA	9q31.1		rs4149310-A	NR	3E-9		0.083	unit decrease	Illumina [NR] (imputed)	N
1405	chr9	107589133	107589134	rs4149310	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Total cholesterol levels	128,305 Japanese ancestry individuals	NA	9q31.1	NR	rs4149310-?	NR	1E-22		0.04137	[0.033-0.05] unit decrease novel	Illumina [6108953] (imputed)	N
1405	chr9	107589133	107589134	rs4149310	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	High density lipoprotein cholesterol levels	70,657 Japanese ancestry individuals	NA	9q31.1	NR	rs4149310-?	NR	2E-28		0.06261	[0.051-0.074] unit decrease novel	Illumina [6108953] (imputed)	N
1405	chr9	107589133	107589134	rs4149310	22916037	Inouye M	2012-08-16	PLoS Genet	Novel Loci for metabolic networks and multi-tissue expression studies reveal genes for atherosclerosis.	Metabolite levels	6,608 European ancestry individuals	NA	9q31.1	ABCA1	rs4149310-?	0.10	2E-10				Illumina [~ 2000000] (imputed)	N
1405	chr9	107589254	107589255	rs2066718	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	9q31.1		rs2066718-C	0.970935	5E-10		0.0760439	[0.052-0.1] unit decrease	NR [11722792] (imputed)	N
1405	chr9	107589254	107589255	rs2066718	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total esterified cholesterol levels	115,082 European ancestry individuals	NA	9q31.1		rs2066718-C	0.970938	1E-8		0.0674316	[0.044-0.091] unit decrease	NR [11722792] (imputed)	N
1405	chr9	107589254	107589255	rs2066718	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Sphingomyelin levels	115,006 European ancestry individuals	NA	9q31.1		rs2066718-C	0.970932	2E-9		0.0687812	[0.046-0.091] unit decrease	NR [11722792] (imputed)	N
1405	chr9	107589254	107589255	rs2066718	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	9q31.1		rs2066718-C	0.970938	2E-25		0.121408	[0.099-0.144] unit increase	NR [11722792] (imputed)	N
1405	chr9	107589254	107589255	rs2066718	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	9q31.1		rs2066718-C	0.970938	1E-8		0.0677367	[0.044-0.091] unit increase	NR [11722792] (imputed)	N
1405	chr9	107589254	107589255	rs2066718	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in IDL	115,082 European ancestry individuals	NA	9q31.1		rs2066718-C	0.970938	2E-9		0.0745027	[0.05-0.099] unit increase	NR [11722792] (imputed)	N
1405	chr9	107589254	107589255	rs2066718	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	HDL cholesterol levels	115,082 European ancestry individuals	NA	9q31.1		rs2066718-C	0.970938	6E-14		0.0823627	[0.061-0.104] unit decrease	NR [11722792] (imputed)	N
1405	chr9	107589254	107589255	rs2066718	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	9q31.1		rs2066718-C	0.970938	4E-16		0.0947376	[0.072-0.118] unit decrease	NR [11722792] (imputed)	N
1405	chr9	107589254	107589255	rs2066718	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	9q31.1		rs2066718-C	0.970938	1E-17		0.0930098	[0.072-0.114] unit decrease	NR [11722792] (imputed)	N
1405	chr9	107589254	107589255	rs2066718	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	9q31.1		rs2066718-C	0.970935	3E-9		0.0723144	[0.048-0.096] unit increase	NR [11722792] (imputed)	N
1405	chr9	107589254	107589255	rs2066718	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	9q31.1		rs2066718-C	0.970938	1E-13		0.0821384	[0.061-0.104] unit decrease	NR [11722792] (imputed)	N
1405	chr9	107589254	107589255	rs2066718	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	9q31.1		rs2066718-C	0.970938	2E-17		0.101069	[0.078-0.124] unit decrease	NR [11722792] (imputed)	N
1405	chr9	107589254	107589255	rs2066718	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	9q31.1	NR	rs2066718-T	NR	8E-13		0.0496	[0.036-0.063] unit increase	Affymetrix [9000000] (imputed)	N
1405	chr9	107589254	107589255	rs2066718	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	9q31.1	NR	rs2066718-T	NR	1E-49		0.1073	[0.093-0.121] unit increase	Affymetrix [9000000] (imputed)	N
1405	chr9	107589254	107589255	rs2066718	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	9q31.1	NR	rs2066718-T	NR	3E-63		0.1221	[0.11-0.14] unit increase	Affymetrix [9000000] (imputed)	N
1405	chr9	107589566	107589567	rs7024300	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	9q31.1	NR	rs7024300-?	NR	9E-9		1.098056	[0.72-1.47] unit increase	Illumina [31978362] (imputed)	N
1405	chr9	107589566	107589567	rs7024300	26879886	Wakil SM	2016-02-16	Clin Genet	A common variant association study reveals novel susceptibility loci for low HDL-cholesterol levels in ethnic Arabs.	Low high density lipoprotein cholesterol levels	1,747 Saudi Arab ancestry cases, 2,335 Saudi Arab ancestry controls	517 Saudi Arab ancestry cases, 896 Saudi Arab ancestry controls	9q31.1	ABCA1	rs7024300-T	NR	1E-8		1.4492754	[1.11-1.92]	Affymetrix [~ 8000000] (imputed)	N
1405	chr9	107589579	107589580	rs4149309	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	9q31.1	ABCA1	rs4149309-A	0.8413	5E-6		0.0418	[0.024-0.06] unit decrease	NR [8041861] (imputed)	N
1405	chr9	107589743	107589744	rs4149307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	9q31.1		rs4149307-C	0.844634	4E-22		0.0535727	[0.043-0.064] unit increase	NR [11722792] (imputed)	N
1405	chr9	107589743	107589744	rs4149307	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	9q31.1		rs4149307-C	0.844634	3E-10		0.0339883	[0.023-0.045] unit decrease	NR [11722792] (imputed)	N
1405	chr9	107589743	107589744	rs4149307	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Stem cell factor levels	21,758 European ancestry individuals	9,173 individuals	9q31.1		rs4149307-T	0.15	5E-16		0.1047	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1405	chr9	107589743	107589744	rs4149307	32226016	Hu Y	2020-03-30	PLoS Genet	Minority-centric meta-analyses of blood lipid levels identify novel loci in the Population Architecture using Genomics and Epidemiology (PAGE) study.	High density lipoprotein cholesterol levels	17,641 African American individuals, 22,830 Hispanics ancestry individuals, 2,378 East Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals, 22,887 European ancestry individuals	up to 71,987 African American individuals, up to 34,899 Hispanics ancestry individuals, up to 315,133 European ancestry individuals, up to 9,593 Asian ancestry individuals, up to 94,674 European ancestry, East Asian ancestry, African American, South Asian ancestry, Hispanic individuals	9q31.1		rs4149307-?	NR	1E-26		0.088	[0.072-0.104] mg/dL increase	Affymetrix, Illumina [NR] (imputed)	N
1405	chr9	107589743	107589744	rs4149307	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x short total sleep time interaction (2df test)	3,007 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,474 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, up to 11,901 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,567 European ancestry controls, 4,047 Hispanic/Latino controls	up to 221 African American short sleepers, 629 East Asian ancestry short sleepers, up to 9,585 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 2,504 East Asian ancestry controls, up to 38,027 European ancestry controls, 10,061 Hispanic controls	9q31.1	ABCA1	rs4149307-?	NR	3E-33		0.01358	[0.011-0.016] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1405	chr9	107589743	107589744	rs4149307	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x long total sleep time interaction (2df test)	2,933 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, up to 7,870 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,975 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 32,171 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 616 East Asian ancestry long sleepers, up to 9,486 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 929 African American controls, 2,517 East Asian ancestry controls, up to 38,126 European ancestry controls, 10,063 Hispanic controls	9q31.1	ABCA1	rs4149307-?	NR	3E-30		0.01447	[0.012-0.017] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1405	chr9	107589743	107589744	rs4149307	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	9q31.1	ABCA1	rs4149307-T	0.3233	3E-93		0.0685	[0.062-0.075] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1405	chr9	107591271	107591272	rs2853579	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	9q31.1	NR	rs2853579-?	NR	9E-12		0.8597382	[0.61-1.11] unit increase	Illumina [31978362] (imputed)	N
1405	chr9	107591271	107591272	rs2853579	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9q31.1	NR	rs2853579-G	NR	1E-19		0.053	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1405	chr9	107591271	107591272	rs2853579	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9q31.1	NR	rs2853579-G	0.874	3E-14	(EA)	0.052	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1405	chr9	107591271	107591272	rs2853579	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9q31.1	NR	rs2853579-G	NR	9E-8		0.032	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1405	chr9	107591271	107591272	rs2853579	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9q31.1	NR	rs2853579-G	0.874	3E-6	(EA)	0.033	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1405	chr9	107591271	107591272	rs2853579	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9q31.1	NR	rs2853579-G	NR	2E-20		0.044	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1405	chr9	107591271	107591272	rs2853579	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9q31.1	NR	rs2853579-G	0.874	6E-16	(EA)	0.046	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1405	chr9	107591477	107591478	rs2066717	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	9q31.1	NR	rs2066717-A	NR	4E-31		0.057	[0.047-0.067] unit increase	Affymetrix [9000000] (imputed)	N
1405	chr9	107591477	107591478	rs2066717	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	9q31.1	NR	rs2066717-A	NR	2E-14		0.0377	[0.028-0.047] unit increase	Affymetrix [9000000] (imputed)	N
1405	chr9	107591477	107591478	rs2066717	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	9q31.1	NR	rs2066717-A	NR	1E-34		0.0631	[0.053-0.073] unit increase	Affymetrix [9000000] (imputed)	N
1405	chr9	107591477	107591478	rs2066717	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	9q31.1	NR	rs2066717-A	NR	6E-38		0.0664	[0.056-0.077] unit increase	Affymetrix [9000000] (imputed)	N
1405	chr9	107592355	107592356	rs78548599	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	9q31.1	NR	rs78548599-T	NR	5E-15		0.0424	[0.032-0.053] unit decrease	Affymetrix [9000000] (imputed)	N
1405	chr9	107592355	107592356	rs78548599	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	9q31.1	NR	rs78548599-T	NR	5E-13		0.0393	[0.029-0.05] unit decrease	Affymetrix [9000000] (imputed)	N
1405	chr9	107593271	107593272	rs755276277	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	HDL cholesterol levels	400,754 European ancestry individuals	NA	9q31.1		rs755276277-?	NR	4E-13		0.852108	[0.59-1.11] unit decrease	NR [9800000] (imputed)	N
1405	chr9	107593271	107593272	rs755276277	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Apolipoprotein A1 levels	398,508 European ancestry individuals	NA	9q31.1		rs755276277-?	NR	2E-15		0.981547	[0.71-1.25] unit decrease	NR [9800000] (imputed)	N
1405	chr9	107593328	107593329	rs137854496	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	HDL cholesterol levels	400,754 European ancestry individuals	NA	9q31.1		rs137854496-?	NR	6E-58		1.25762	[1.1-1.42] unit decrease	NR [9800000] (imputed)	N
1405	chr9	107593328	107593329	rs137854496	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	C-reactive protein levels	436,939 European ancestry individuals	NA	9q31.1		rs137854496-?	NR	3E-77		1.51329	[1.35-1.68] unit decrease	NR [9800000] (imputed)	N
1405	chr9	107593328	107593329	rs137854496	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Apolipoprotein A1 levels	398,508 European ancestry individuals	NA	9q31.1		rs137854496-?	NR	7E-68		1.41994	[1.25-1.59] unit decrease	NR [9800000] (imputed)	N
1405	chr9	107593338	107593339	rs2853574	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	HDL cholesterol levels	400,754 European ancestry individuals	NA	9q31.1		rs2853574-?	NR	1E-25		1.52071	[1.22-1.83] unit decrease	NR [9800000] (imputed)	N
1405	chr9	107593338	107593339	rs2853574	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Apolipoprotein A1 levels	398,508 European ancestry individuals	NA	9q31.1		rs2853574-?	NR	2E-29		1.74411	[1.43-2.06] unit decrease	NR [9800000] (imputed)	N
1405	chr9	107594363	107594364	rs2515629	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	9q31.1	NR	rs2515629-G	NR	2E-11		0.0209	[0.015-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
1405	chr9	107594363	107594364	rs2515629	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	9q31.1	NR	rs2515629-G	NR	5E-14		0.0247	[0.018-0.031] unit decrease	Affymetrix [9000000] (imputed)	N
1405	chr9	107594363	107594364	rs2515629	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	9q31.1	NR	rs2515629-G	NR	1E-17		0.0281	[0.022-0.035] unit decrease	Affymetrix [9000000] (imputed)	N
1405	chr9	107594363	107594364	rs2515629	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	9q31.1	NR	rs2515629-?	NR	2E-8		0.8957684	[0.58-1.21] unit decrease	Illumina [31978362] (imputed)	N
1405	chr9	107594363	107594364	rs2515629	21347282	Lettre G	2011-02-10	PLoS Genet	Genome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project.	HDL cholesterol	7,813 African American individuals	4,323 African American and Afro-Caribbean individuals	9q31.1	ABCA1	rs2515629-A	0.78	5E-7		0.1184	[0.072-0.165] unit increase	Affymetrix [~ 2740000] (imputed)	N
1405	chr9	107594697	107594698	rs77437185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small HDL particles	115,082 European ancestry individuals	NA	9q31.1		rs77437185-G	0.961498	1E-9		0.0657226	[0.045-0.087] unit decrease	NR [11722792] (imputed)	N
1405	chr9	107594697	107594698	rs77437185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small HDL	115,082 European ancestry individuals	NA	9q31.1		rs77437185-G	0.961498	8E-10		0.0660311	[0.045-0.087] unit decrease	NR [11722792] (imputed)	N
1405	chr9	107595601	107595602	rs7873387	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	3-Hydroxybutyrate levels	113,594 European ancestry individuals	NA	9q31.1		rs7873387-A	0.879389	5E-8		0.0342812	[0.022-0.047] unit decrease	NR [11722792] (imputed)	N
1405	chr9	107595601	107595602	rs7873387	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	9q31.1	ABCA1	rs7873387-A	0.8136	4E-8		0.0211	[0.014-0.029] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1405	chr9	107597527	107597528	rs201375651	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	9q31.1	ABCA1	rs201375651-CA	0.395	3E-8		1.04	[1.03-1.06]	Affymetrix, Illumina [11800000] (imputed)	N
1405	chr9	107600734	107600734	rs36050540	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	9q31.1	ABCA1	rs36050540-CA	0.223265	8E-11		0.018084828	[0.013-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1405	chr9	107600734	107600734	rs36050540	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	9q31.1	ABCA1	rs36050540-CA	0.223275	1E-11		0.018824276	[0.013-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1405	chr9	107600734	107600734	rs36050540	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	9q31.1	ABCA1	rs36050540-CA	0.223304	9E-12		0.018877596	[0.013-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1405	chr9	107600734	107600734	rs36050540	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	9q31.1	ABCA1	rs36050540-CA	0.223307	3E-12		0.019359237	[0.014-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1405	chr9	107601540	107601541	rs2472386	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	9q31.1	NR	rs2472386-?	NR	6E-12		0.8027075	[0.57-1.03] unit increase	Illumina [31978362] (imputed)	N
1405	chr9	107601540	107601541	rs2472386	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9q31.1	NR	rs2472386-G	NR	1E-11		0.024	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1405	chr9	107601540	107601541	rs2472386	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9q31.1	NR	rs2472386-G	0.658	9E-7	(EA)	0.019	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1405	chr9	107601540	107601541	rs2472386	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9q31.1	NR	rs2472386-G	0.586	8E-7	(Hispanic)	0.062	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1405	chr9	107601540	107601541	rs2472386	26780889	Below JE	2016-01-19	Sci Rep	Meta-analysis of lipid-traits in Hispanics identifies novel loci, population-specific effects, and tissue-specific enrichment of eQTLs.	HDL cholesterol	4,383 Mexican ancestry individuals	7,876 Latin American/Hispanic individuals,  European ancestry individuals (Global Lipids Genetics Consortium et al, 2013)	9q31.1	ABCA1	rs2472386-A	0.436	8E-11	(Hispanic)	0.088	[0.061-0.115] unit increase	Affymetrix [at least 370268] (imputed)	N
1405	chr9	107604506	107604507	rs2472448	25085501	Bunyavanich S	2014-08-02	BMC Med Genomics	Integrated genome-wide association, coexpression network, and expression single nucleotide polymorphism analysis identifies novel pathway in allergic rhinitis.	Allergic rhinitis	872 European ancestry cases, 1,193 Latino cases, 647 African American/Afro-Caribbean cases, 1,162 European ancestry controls, 1,133 Latino controls, 626 African American/Afro-Caribbean controls	NA	9q31.1	ABCA1	rs2472448-?	NR	8E-7	(Latino)	1.82	[1.27-3.13]	Affymetrix, Illumina [NR] (imputed)	N
1405	chr9	107609475	107609476	rs4149291	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	9q31.1	NR	rs4149291-G	NR	1E-17		0.0296	[0.023-0.036] unit decrease	Affymetrix [9000000] (imputed)	N
1405	chr9	107609475	107609476	rs4149291	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	9q31.1	NR	rs4149291-G	NR	3E-9		0.0206	[0.014-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
1405	chr9	107609475	107609476	rs4149291	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	9q31.1	NR	rs4149291-G	NR	4E-13		0.0262	[0.019-0.033] unit decrease	Affymetrix [9000000] (imputed)	N
1405	chr9	107609475	107609476	rs4149291	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	9q31.1	NR	rs4149291-G	NR	3E-17		0.0306	[0.024-0.038] unit decrease	Affymetrix [9000000] (imputed)	N
1406	chr9	107620796	107620797	rs188308962	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large HDL	115,082 European ancestry individuals	NA	9q31.1		rs188308962-A	0.998371	4E-8		0.267122	[0.17-0.36] unit increase	NR [11722792] (imputed)	N
1406	chr9	107620796	107620797	rs188308962	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total concentration of lipoprotein particles	115,082 European ancestry individuals	NA	9q31.1		rs188308962-A	0.998371	2E-8		0.270137	[0.18-0.36] unit increase	NR [11722792] (imputed)	N
1406	chr9	107620796	107620797	rs188308962	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	9q31.1		rs188308962-A	0.998371	3E-14		0.369696	[0.27-0.46] unit decrease	NR [11722792] (imputed)	N
1406	chr9	107620796	107620797	rs188308962	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	9q31.1		rs188308962-A	0.998371	3E-9		0.303527	[0.2-0.4] unit decrease	NR [11722792] (imputed)	N
1406	chr9	107620796	107620797	rs188308962	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	HDL cholesterol levels	115,082 European ancestry individuals	NA	9q31.1		rs188308962-A	0.998371	2E-8		0.259334	[0.17-0.35] unit increase	NR [11722792] (imputed)	N
1406	chr9	107620796	107620797	rs188308962	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	9q31.1		rs188308962-A	0.998371	1E-8		0.259021	[0.17-0.35] unit increase	NR [11722792] (imputed)	N
1406	chr9	107620796	107620797	rs188308962	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of HDL particles	115,082 European ancestry individuals	NA	9q31.1		rs188308962-A	0.998371	6E-9		0.279745	[0.19-0.37] unit increase	NR [11722792] (imputed)	N
1406	chr9	107620796	107620797	rs188308962	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	9q31.1		rs188308962-A	0.998371	1E-8		0.263284	[0.17-0.35] unit increase	NR [11722792] (imputed)	N
1406	chr9	107620796	107620797	rs188308962	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein A1 levels	115,082 European ancestry individuals	NA	9q31.1		rs188308962-A	0.998371	4E-9		0.276218	[0.18-0.37] unit increase	NR [11722792] (imputed)	N
1406	chr9	107620796	107620797	rs188308962	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	9q31.1	NR	rs188308962-G	NR	3E-17		0.255	[0.2-0.31] unit decrease	Affymetrix [9000000] (imputed)	N
1406	chr9	107620796	107620797	rs188308962	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	9q31.1	NR	rs188308962-G	NR	1E-55		0.4966	[0.43-0.56] unit decrease	Affymetrix [9000000] (imputed)	N
1406	chr9	107620796	107620797	rs188308962	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	9q31.1	NR	rs188308962-G	NR	6E-68		0.552	[0.49-0.61] unit decrease	Affymetrix [9000000] (imputed)	N
1406	chr9	107620834	107620835	rs9282541	32226016	Hu Y	2020-03-30	PLoS Genet	Minority-centric meta-analyses of blood lipid levels identify novel loci in the Population Architecture using Genomics and Epidemiology (PAGE) study.	High density lipoprotein cholesterol levels	17,641 African American individuals, 22,830 Hispanics ancestry individuals, 2,378 East Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals, 22,887 European ancestry individuals	up to 71,987 African American individuals, up to 34,899 Hispanics ancestry individuals, up to 315,133 European ancestry individuals, up to 9,593 Asian ancestry individuals, up to 94,674 European ancestry, East Asian ancestry, African American, South Asian ancestry, Hispanic individuals	9q31.1		rs9282541-?	NR	5E-31		0.268	[0.22-0.31] mg/dL decrease	Affymetrix, Illumina [NR] (imputed)	N
1406	chr9	107620834	107620835	rs9282541	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	9q31.1	NR	rs9282541-?	NR	3E-7		5.550826	[3.42-7.68] unit decrease	Illumina [32003504] (imputed)	N
1406	chr9	107620834	107620835	rs9282541	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	9q31.1	NR	rs9282541-?	NR	5E-31		3.864276	[3.21-4.52] unit decrease	Illumina [31978362] (imputed)	N
1406	chr9	107620834	107620835	rs9282541	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	9q31.1	ABCA1	rs9282541-A	0.044	7E-12	(Hispanic)	0.148	[0.1-0.19] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1406	chr9	107620834	107620835	rs9282541	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	9q31.1	ABCA1	rs9282541-A	0.044	6E-32	(Hispanic)	0.258	[0.21-0.3] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1406	chr9	107620834	107620835	rs9282541	23505323	Weissglas-Volkov D	2013-03-15	J Med Genet	Genomic study in Mexicans identifies a new locus for triglycerides and refines European lipid loci.	HDL cholesterol	1,122 Mexican ancestry hypertriglyceridemia cases, 1,118 Mexican ancestry controls	1,067 Mexican ancestry hypertriglyceridemia cases, 1,054 Mexican ancestry controls	9q31.1	ABCA1, NIPSNAP3A, NIPSNAP3B	rs9282541-A	0.11	6E-26		0.37	[0.29-0.45] unit decrease	Illumina [1361436] (imputed)	N
1406	chr9	107624241	107624242	rs2249891	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	9q31.1	NR	rs2249891-G	NR	4E-16		0.0314	[0.024-0.039] unit increase	Affymetrix [9000000] (imputed)	N
1406	chr9	107624241	107624242	rs2249891	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	9q31.1	NR	rs2249891-G	NR	8E-23		0.0381	[0.03-0.046] unit increase	Affymetrix [9000000] (imputed)	N
1406	chr9	107626541	107626542	rs4149280	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	9q31.1	NR	rs4149280-T	NR	3E-10		0.0483	[0.033-0.063] unit increase	Affymetrix [9000000] (imputed)	N
1406	chr9	107629335	107629336	rs13301006	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	9q31.1	NR	rs13301006-T	NR	8E-44		0.0461	[0.04-0.053] unit decrease	Affymetrix [9000000] (imputed)	N
1406	chr9	107629335	107629336	rs13301006	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	9q31.1	NR	rs13301006-T	NR	2E-15		0.0264	[0.02-0.033] unit decrease	Affymetrix [9000000] (imputed)	N
1406	chr9	107629335	107629336	rs13301006	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	9q31.1	NR	rs13301006-T	NR	5E-80		0.0658	[0.059-0.073] unit decrease	Affymetrix [9000000] (imputed)	N
1406	chr9	107629335	107629336	rs13301006	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	9q31.1	NR	rs13301006-T	NR	1E-89		0.0698	[0.063-0.077] unit decrease	Affymetrix [9000000] (imputed)	N
1406	chr9	107632643	107632644	rs11791258	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	9q31.1		rs11791258-?	NR	5E-8		0.0140808	[0.009-0.0191] unit increase	NR [6912294] (imputed)	N
1406	chr9	107638506	107638507	rs4149275	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	9q31.1	ABCA1	rs4149275-G	NR	3E-9		0.0229334	[0.015-0.03] unit decrease	Affymetrix [319769] (imputed)	N
1406	chr9	107638506	107638507	rs4149275	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	9q31.1	ABCA1	rs4149275-G	NR	2E-9		0.0232194	[0.016-0.031] unit decrease	Affymetrix [319769] (imputed)	N
1406	chr9	107638506	107638507	rs4149275	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	9q31.1	NIPSNAP3B	rs4149275-?	NR	6E-6	(SM 16:0)	0.2339987	[0.13-0.34] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1406	chr9	107639179	107639180	rs67740686	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial sphingomyelins	4,348 individuals	NA	9q31.1		rs67740686-A	0.10874196	5E-9		0.207608	[0.14-0.28] mmol/l decrease	Illumina [7701709] (imputed)	N
1406	chr9	107646755	107646756	rs145183203	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	HDL cholesterol levels	400,754 European ancestry individuals	NA	9q31.1		rs145183203-?	NR	2E-14		0.217945	[0.16-0.28] unit decrease	NR [9800000] (imputed)	N
1406	chr9	107646755	107646756	rs145183203	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Apolipoprotein A1 levels	398,508 European ancestry individuals	NA	9q31.1		rs145183203-?	NR	5E-16		0.244364	[0.19-0.3] unit decrease	NR [9800000] (imputed)	N
1406	chr9	107646755	107646756	rs145183203	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	9q31.1	NR	rs145183203-A	NR	6E-12		0.2357	[0.17-0.3] unit decrease	Affymetrix [9000000] (imputed)	N
1406	chr9	107646755	107646756	rs145183203	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	9q31.1	NR	rs145183203-A	NR	3E-14		0.2598	[0.19-0.33] unit decrease	Affymetrix [9000000] (imputed)	N
1406	chr9	107647018	107647019	rs11789603	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small HDL	115,082 European ancestry individuals	NA	9q31.1		rs11789603-C	0.891178	4E-8		0.0364696	[0.023-0.049] unit decrease	NR [11722792] (imputed)	N
1406	chr9	107647018	107647019	rs11789603	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium HDL	115,082 European ancestry individuals	NA	9q31.1		rs11789603-C	0.891178	5E-14		0.0467854	[0.035-0.059] unit decrease	NR [11722792] (imputed)	N
1406	chr9	107647018	107647019	rs11789603	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	9q31.1	ABCA1	rs11789603-C	0.891991	1E-13		0.0249753	[0.018-0.032] unit decrease	Affymetrix [NR] (imputed)	N
1406	chr9	107647018	107647019	rs11789603	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	9q31.1	ABCA1	rs11789603-C	0.891956	7E-110		0.0685258	[0.062-0.075] unit decrease	Affymetrix [NR] (imputed)	N
1406	chr9	107647018	107647019	rs11789603	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	9q31.1	ABCA1	rs11789603-C	0.892143	1E-119		0.0737059	[0.067-0.08] unit decrease	Affymetrix [NR] (imputed)	N
1406	chr9	107647018	107647019	rs11789603	31589552	Lind L	2019-10-07	Metab Syndr Relat Disord	Genome-Wide Association Study of the Metabolic Syndrome in UK Biobank.	Metabolic syndrome	291,107 European ancestry individuals	NA	9q31.1	ABCA1	rs11789603-T	0.107873	4E-8		0.058891	[0.038-0.08] unit decrease	Affymetrix [9463307] (imputed)	N
1406	chr9	107647018	107647019	rs11789603	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9q31.1	NR	rs11789603-C	NR	1E-9		0.042	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1406	chr9	107647018	107647019	rs11789603	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9q31.1	NR	rs11789603-C	0.893	4E-9	(EA)	0.044	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1406	chr9	107647018	107647019	rs11789603	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9q31.1	NR	rs11789603-C	NR	9E-29		0.062	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1406	chr9	107647018	107647019	rs11789603	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9q31.1	NR	rs11789603-C	0.893	7E-27	(EA)	0.065	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1406	chr9	107647076	107647077	rs4149270	30369944	Balakrishnan P	2018-10-12	Front Genet	Genetic Variants Related to Cardiometabolic Traits Are Associated to B Cell Function, Insulin Resistance, and Diabetes Among AmeriCan Indians: The Strong Heart Family Study.	HOMA-B (corrected for HOMA-IR)	1,892 American Indian ancestry individuals	NA	9q31.1	ABCA1	rs4149270-?	0.23	2E-7		22.99	unit decrease	Illumina [120975] (imputed)	N
1406	chr9	107647219	107647220	rs4149268	18193043	Willer CJ	2008-01-13	Nat Genet	Newly identified loci that influence lipid concentrations and risk of coronary artery disease.	HDL cholesterol	8,656 European ancestry individuals	11,437 European ancestry individuals	9q31.1	ABCA1	rs4149268-C	0.64	1E-10		0.82	[NR] mg/dl increase	Affymetrix, Illumina [~ 2261000] (imputed)	N
1406	chr9	107647654	107647655	rs3890182	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	9q31.1	NR	rs3890182-?	NR	1E-8		0.9916356	[0.65-1.33] unit decrease	Illumina [31978362] (imputed)	N
1406	chr9	107647654	107647655	rs3890182	20864672	Waterworth DM	2010-09-23	Arterioscler Thromb Vasc Biol	Genetic variants influencing circulating lipid levels and risk of coronary artery disease.	HDL cholesterol	up to 17,723 European ancestry individuals	up to 37,774 European ancestry individuals, up to 9,665 Indian Asian ancestry individuals	9q31.1	ABCA1	rs3890182-G	0.88	5E-7		0.02	[0.01-0.03] unit increase	Affymetrix, Illumina, Perlegen [2155369] (imputed)	N
1406	chr9	107647654	107647655	rs3890182	18193044	Kathiresan S	2008-01-13	Nat Genet	Six new loci associated with blood low-density lipoprotein cholesterol, high-density lipoprotein cholesterol or triglycerides in humans.	HDL cholesterol	2,758 European ancestry individuals	18,554 European ancestry individuals	9q31.1	ABCA1	rs3890182-A	0.13	3E-10		0.1	[0.06-0.14] unit decrease	Affymetrix [389878]	N
1406	chr9	107648594	107648595	rs3847302	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	9q31.1	NR	rs3847302-?	NR	1E-8		0.9893386	[0.65-1.33] unit decrease	Illumina [31978362] (imputed)	N
1406	chr9	107648594	107648595	rs3847302	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9q31.1	NR	rs3847302-A	NR	6E-15		0.05	unit increase	Affymetrix [at least 7091467] (imputed)	N
1406	chr9	107648594	107648595	rs3847302	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9q31.1	NR	rs3847302-A	0.877	4E-13	(EA)	0.051	unit increase	Affymetrix [at least 7091467] (imputed)	N
1406	chr9	107648594	107648595	rs3847302	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9q31.1	NR	rs3847302-A	NR	6E-43		0.072	unit increase	Affymetrix [at least 7091467] (imputed)	N
1406	chr9	107648594	107648595	rs3847302	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9q31.1	NR	rs3847302-A	0.877	6E-36	(EA)	0.072	unit increase	Affymetrix [at least 7091467] (imputed)	N
1406	chr9	107650675	107650676	rs10991390	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	9q31.1	NR	rs10991390-G	NR	1E-9		0.0505	[0.034-0.067] unit increase	Affymetrix [9000000] (imputed)	N
1406	chr9	107650675	107650676	rs10991390	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	9q31.1	NR	rs10991390-G	NR	4E-12		0.0603	[0.043-0.077] unit increase	Affymetrix [9000000] (imputed)	N
1406	chr9	107650675	107650676	rs10991390	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	9q31.1	NR	rs10991390-G	NR	8E-14		0.0652	[0.048-0.082] unit increase	Affymetrix [9000000] (imputed)	N
1406	chr9	107651173	107651174	rs2275543	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	9q31.1	NIPSNAP3B	rs2275543-?	NR	4E-6	(3-methyladipate; pimelate)	0.28123182	[0.16-0.4] unit increase	Affymetrix [at least 2500000] (imputed)	N
1406	chr9	107653425	107653426	rs12686004	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	9q31.1	NR	rs12686004-G	NR	2E-6	(GEE model)	0.60571	[0.36-0.86] unit increase	NR [NR] (imputed)	N
1406	chr9	107653425	107653426	rs12686004	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	9q31.1	ABCA1	rs12686004-A	0.1618	3E-8	(SM d18:2/24:0)	0.1046	[0.068-0.141] unit decrease	Illumina [~ 47000000] (imputed)	N
1406	chr9	107653425	107653426	rs12686004	31566214	Kulminski AM	2019-09-30	J Gerontol A Biol Sci Med Sci	Quantitative and qualitative role of antagonistic heterogeneity in genetics of blood lipids.	High density lipoprotein cholesterol levels	29,902 European ancestry individuals	NA	9q31.1		rs12686004-A	0.12	1E-6		0.88	[0.53-1.23] unit decrease	Affymetrix, Illumina [up to 2500000] (imputed)	N
1406	chr9	107653425	107653426	rs12686004	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	9q31.1	NR	rs12686004-?	NR	4E-7		0.9459355	[0.58-1.31] unit decrease	Illumina [31978362] (imputed)	N
1406	chr9	107653425	107653426	rs12686004	30718733	Moon S	2019-02-04	Sci Rep	The Korea Biobank Array: Design and Identification of Coding Variants Associated with Blood Biochemical Traits.	High density lipoprotein cholesterol levels	6,949 Korean ancestry individuals	6,000 Korean ancestry individuals	9q31.1	ABCA1	rs12686004-?		4E-10				Affymetrix [at least 805769] (imputed)	N
1406	chr9	107653425	107653426	rs12686004	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9q31.1	NR	rs12686004-G	NR	1E-6		0.028	unit increase	Affymetrix [at least 7091467] (imputed)	N
1406	chr9	107653425	107653426	rs12686004	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9q31.1	NR	rs12686004-G	0.879	6E-6	(EA)	0.029	unit increase	Affymetrix [at least 7091467] (imputed)	N
1406	chr9	107653425	107653426	rs12686004	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9q31.1	NR	rs12686004-G	NR	3E-26		0.066	unit increase	Affymetrix [at least 7091467] (imputed)	N
1406	chr9	107653425	107653426	rs12686004	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9q31.1	NR	rs12686004-G	0.879	3E-21	(EA)	0.067	unit increase	Affymetrix [at least 7091467] (imputed)	N
1406	chr9	107653425	107653426	rs12686004	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9q31.1	NR	rs12686004-G	NR	4E-9		0.038	unit increase	Affymetrix [at least 7091467] (imputed)	N
1406	chr9	107653425	107653426	rs12686004	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9q31.1	NR	rs12686004-G	0.879	3E-7	(EA)	0.037	unit increase	Affymetrix [at least 7091467] (imputed)	N
1406	chr9	107653425	107653426	rs12686004	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9q31.1	NR	rs12686004-G	NR	2E-27		0.056	unit increase	Affymetrix [at least 7091467] (imputed)	N
1406	chr9	107653425	107653426	rs12686004	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9q31.1	NR	rs12686004-G	0.879	5E-24	(EA)	0.058	unit increase	Affymetrix [at least 7091467] (imputed)	N
1406	chr9	107653425	107653426	rs12686004	21909109	Kim YJ	2011-09-11	Nat Genet	Large-scale genome-wide association studies in East Asians identify new genetic loci influencing metabolic traits.	HDL cholesterol	12,545 Korean ancestry individuals	Up to 30,395 East Asian ancestry individuals	9q31.1	ABCA1	rs12686004-T	0.21	2E-18		0.0217	[0.017-0.027] mg/dL decrease	Affymetrix [~ 2200000] (imputed)	N
1406	chr9	107657069	107657070	rs3905000	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	9q31.1	NR	rs3905000-?	NR	5E-9		0.9632778	[0.64-1.29] unit decrease	Illumina [31978362] (imputed)	N
1406	chr9	107657069	107657070	rs3905000	29615537	Kulminski AM	2018-03-01	Aging (Albany NY)	Strong impact of natural-selection-free heterogeneity in genetics of age-related phenotypes.	High density lipoprotein cholesterol levels	up to 33,431 European ancestry individuals	NA	9q31.1	ABCA1	rs3905000-A	0.1354	3E-8		1.6761924	[1.08-2.27] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1406	chr9	107657069	107657070	rs3905000	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9q31.1	NR	rs3905000-G	NR	3E-13		0.044	unit increase	Affymetrix [at least 7091467] (imputed)	N
1406	chr9	107657069	107657070	rs3905000	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9q31.1	NR	rs3905000-G	0.86	3E-12	(EA)	0.046	unit increase	Affymetrix [at least 7091467] (imputed)	N
1406	chr9	107657069	107657070	rs3905000	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9q31.1	NR	rs3905000-G	NR	1E-43		0.069	unit increase	Affymetrix [at least 7091467] (imputed)	N
1406	chr9	107657069	107657070	rs3905000	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9q31.1	NR	rs3905000-G	0.883	1E-6	(Hispanic)	0.094	unit increase	Affymetrix [at least 7091467] (imputed)	N
1406	chr9	107657069	107657070	rs3905000	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9q31.1	NR	rs3905000-G	0.86	4E-36	(EA)	0.068	unit increase	Affymetrix [at least 7091467] (imputed)	N
1406	chr9	107657069	107657070	rs3905000	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	9q31.1	NR	rs3905000-?	NR	8E-6	(AA)	5.0	[4.14-5.86]	Illumina [905956]	N
1406	chr9	107657069	107657070	rs3905000	21116278	Furney SJ	2010-11-30	Mol Psychiatry	Genome-wide association with MRI atrophy measures as a quantitative trait locus for Alzheimer's disease.	Whole-brain volume (Alzheimer's disease interaction)	434 European ancestry mild cognitive impairment cases, 245 European ancestry Alzheimer's disease cases, 284 European ancestry controls	NA	9q31.1	ABCA1	rs3905000-?	NR	9E-6		0.013	[NR] unit increase	Illumina [478011]	N
1406	chr9	107657069	107657070	rs3905000	19060911	Aulchenko YS	2008-12-07	Nat Genet	Loci influencing lipid levels and coronary heart disease risk in 16 European population cohorts.	HDL cholesterol	20,697 European ancestry individuals, 715 Orcadian individuals	NA	9q31.1	ABCA1	rs3905000-G	0.86	9E-13		0.11	[NR] s.d. increase	Affymetrix, Illumina [up to 600000]	N
1406	chr9	107657252	107657253	rs3847305	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	9q31.1		rs3847305-G	0.854036	6E-10		0.0362384	[0.025-0.048] unit increase	NR [11722792] (imputed)	N
1406	chr9	107657252	107657253	rs3847305	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	9q31.1		rs3847305-G	0.854036	7E-13		0.0406651	[0.03-0.052] unit increase	NR [11722792] (imputed)	N
1406	chr9	107659083	107659084	rs80170476	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	9q31.1	NR	rs80170476-?	NR	7E-11				Illumina [7760689] (imputed)	N
1406	chr9	107661128	107661129	rs2244278	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very small VLDL	115,082 European ancestry individuals	NA	9q31.1		rs2244278-C	0.880082	8E-9		0.0357666	[0.024-0.048] unit increase	NR [11722792] (imputed)	N
1406	chr9	107661128	107661129	rs2244278	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium HDL	115,082 European ancestry individuals	NA	9q31.1		rs2244278-C	0.880082	1E-9		0.038115	[0.026-0.05] unit increase	NR [11722792] (imputed)	N
1406	chr9	107661741	107661742	rs2740488	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large HDL	115,082 European ancestry individuals	NA	9q31.1		rs2740488-A	0.734687	5E-45		0.064313	[0.055-0.073] unit increase	NR [11722792] (imputed)	N
1406	chr9	107661741	107661742	rs2740488	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small VLDL	115,082 European ancestry individuals	NA	9q31.1		rs2740488-A	0.734687	1E-8		0.0258553	[0.017-0.035] unit increase	NR [11722792] (imputed)	N
1406	chr9	107661741	107661742	rs2740488	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small LDL	115,082 European ancestry individuals	NA	9q31.1		rs2740488-A	0.734687	6E-13		0.0327432	[0.024-0.042] unit increase	NR [11722792] (imputed)	N
1406	chr9	107661741	107661742	rs2740488	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium LDL	115,082 European ancestry individuals	NA	9q31.1		rs2740488-A	0.734687	5E-18		0.0396045	[0.031-0.049] unit increase	NR [11722792] (imputed)	N
1406	chr9	107661741	107661742	rs2740488	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large LDL	115,082 European ancestry individuals	NA	9q31.1		rs2740488-A	0.734687	3E-13		0.0335613	[0.025-0.043] unit increase	NR [11722792] (imputed)	N
1406	chr9	107661741	107661742	rs2740488	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large HDL	115,082 European ancestry individuals	NA	9q31.1		rs2740488-A	0.734687	1E-52		0.0679856	[0.059-0.077] unit increase	NR [11722792] (imputed)	N
1406	chr9	107661741	107661742	rs2740488	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in LDL	115,082 European ancestry individuals	NA	9q31.1		rs2740488-A	0.734687	1E-14		0.0354045	[0.026-0.044] unit increase	NR [11722792] (imputed)	N
1406	chr9	107661741	107661742	rs2740488	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in HDL	115,082 European ancestry individuals	NA	9q31.1		rs2740488-A	0.734687	8E-16		0.0369151	[0.028-0.046] unit increase	NR [11722792] (imputed)	N
1406	chr9	107661741	107661742	rs2740488	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total phospholipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	9q31.1		rs2740488-A	0.734687	2E-25		0.0463898	[0.038-0.055] unit increase	NR [11722792] (imputed)	N
1406	chr9	107661741	107661742	rs2740488	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large HDL	115,082 European ancestry individuals	NA	9q31.1		rs2740488-A	0.734687	2E-13		0.0311528	[0.023-0.039] unit increase	NR [11722792] (imputed)	N
1406	chr9	107661741	107661742	rs2740488	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small LDL	115,082 European ancestry individuals	NA	9q31.1		rs2740488-A	0.734687	4E-8		0.0257859	[0.017-0.035] unit increase	NR [11722792] (imputed)	N
1406	chr9	107661741	107661742	rs2740488	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium LDL	115,082 European ancestry individuals	NA	9q31.1		rs2740488-A	0.734687	1E-9		0.0284782	[0.019-0.038] unit increase	NR [11722792] (imputed)	N
1406	chr9	107661741	107661742	rs2740488	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium HDL	115,082 European ancestry individuals	NA	9q31.1		rs2740488-A	0.734687	6E-18		0.0375225	[0.029-0.046] unit increase	NR [11722792] (imputed)	N
1406	chr9	107661741	107661742	rs2740488	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	9q31.1		rs2740488-A	0.734687	4E-21		0.0434192	[0.034-0.052] unit increase	NR [11722792] (imputed)	N
1406	chr9	107661741	107661742	rs2740488	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large LDL	115,082 European ancestry individuals	NA	9q31.1		rs2740488-A	0.734687	2E-13		0.03428	[0.025-0.043] unit increase	NR [11722792] (imputed)	N
1406	chr9	107661741	107661742	rs2740488	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	9q31.1		rs2740488-A	0.734687	4E-20		0.0378462	[0.03-0.046] unit increase	NR [11722792] (imputed)	N
1406	chr9	107661741	107661742	rs2740488	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in LDL	115,082 European ancestry individuals	NA	9q31.1		rs2740488-A	0.734687	5E-12		0.0323163	[0.023-0.041] unit increase	NR [11722792] (imputed)	N
1406	chr9	107661741	107661742	rs2740488	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in IDL	115,082 European ancestry individuals	NA	9q31.1		rs2740488-A	0.734687	1E-9		0.0275449	[0.019-0.036] unit increase	NR [11722792] (imputed)	N
1406	chr9	107661741	107661742	rs2740488	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in HDL	115,082 European ancestry individuals	NA	9q31.1		rs2740488-A	0.734687	3E-27		0.0454401	[0.037-0.054] unit increase	NR [11722792] (imputed)	N
1406	chr9	107661741	107661742	rs2740488	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total free cholesterol levels	115,082 European ancestry individuals	NA	9q31.1		rs2740488-A	0.734687	7E-17		0.038266	[0.029-0.047] unit increase	NR [11722792] (imputed)	N
1406	chr9	107661741	107661742	rs2740488	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total fatty acid levels	115,006 European ancestry individuals	NA	9q31.1		rs2740488-A	0.734682	5E-18		0.0400585	[0.031-0.049] unit increase	NR [11722792] (imputed)	N
1406	chr9	107661741	107661742	rs2740488	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total esterified cholesterol levels	115,082 European ancestry individuals	NA	9q31.1		rs2740488-A	0.734687	1E-21		0.0431989	[0.034-0.052] unit increase	NR [11722792] (imputed)	N
1406	chr9	107661741	107661742	rs2740488	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total concentration of lipoprotein particles	115,082 European ancestry individuals	NA	9q31.1		rs2740488-A	0.734687	4E-30		0.0503566	[0.042-0.059] unit increase	NR [11722792] (imputed)	N
1406	chr9	107661741	107661742	rs2740488	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholines levels	115,006 European ancestry individuals	NA	9q31.1		rs2740488-A	0.734682	1E-27		0.0479497	[0.039-0.057] unit increase	NR [11722792] (imputed)	N
1406	chr9	107661741	107661742	rs2740488	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol minus HDL-C levels	115,082 European ancestry individuals	NA	9q31.1		rs2740488-A	0.734687	8E-10		0.0286656	[0.02-0.038] unit increase	NR [11722792] (imputed)	N
1406	chr9	107661741	107661742	rs2740488	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol levels	115,082 European ancestry individuals	NA	9q31.1		rs2740488-A	0.734687	2E-20		0.0420388	[0.033-0.051] unit increase	NR [11722792] (imputed)	N
1406	chr9	107661741	107661742	rs2740488	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Sphingomyelin levels	115,006 European ancestry individuals	NA	9q31.1		rs2740488-A	0.734682	4E-26		0.0463578	[0.038-0.055] unit increase	NR [11722792] (imputed)	N
1406	chr9	107661741	107661742	rs2740488	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Saturated fatty acid levels	115,006 European ancestry individuals	NA	9q31.1		rs2740488-A	0.734682	4E-15		0.0363629	[0.027-0.045] unit increase	NR [11722792] (imputed)	N
1406	chr9	107661741	107661742	rs2740488	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Polyunsaturated fatty acid levels	115,006 European ancestry individuals	NA	9q31.1		rs2740488-A	0.734682	9E-27		0.0487388	[0.04-0.058] unit increase	NR [11722792] (imputed)	N
1406	chr9	107661741	107661742	rs2740488	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	9q31.1		rs2740488-A	0.734687	2E-10		0.0298758	[0.021-0.039] unit decrease	NR [11722792] (imputed)	N
1406	chr9	107661741	107661742	rs2740488	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	9q31.1		rs2740488-A	0.734687	8E-42		0.0602708	[0.052-0.069] unit decrease	NR [11722792] (imputed)	N
1406	chr9	107661741	107661742	rs2740488	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	9q31.1		rs2740488-A	0.734687	5E-33		0.0559705	[0.047-0.065] unit decrease	NR [11722792] (imputed)	N
1406	chr9	107661741	107661742	rs2740488	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	9q31.1		rs2740488-A	0.734687	8E-26		0.0475437	[0.039-0.056] unit decrease	NR [11722792] (imputed)	N
1406	chr9	107661741	107661742	rs2740488	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large HDL	115,082 European ancestry individuals	NA	9q31.1		rs2740488-A	0.734687	3E-11		0.0279753	[0.02-0.036] unit increase	NR [11722792] (imputed)	N
1406	chr9	107661741	107661742	rs2740488	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large LDL	115,082 European ancestry individuals	NA	9q31.1		rs2740488-A	0.734687	3E-9		0.0275455	[0.018-0.037] unit increase	NR [11722792] (imputed)	N
1406	chr9	107661741	107661742	rs2740488	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large HDL	115,082 European ancestry individuals	NA	9q31.1		rs2740488-A	0.734687	3E-18		0.035878	[0.028-0.044] unit increase	NR [11722792] (imputed)	N
1406	chr9	107661741	107661742	rs2740488	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in LDL	115,082 European ancestry individuals	NA	9q31.1		rs2740488-A	0.734687	1E-8		0.0265137	[0.017-0.036] unit increase	NR [11722792] (imputed)	N
1406	chr9	107661741	107661742	rs2740488	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in IDL	115,082 European ancestry individuals	NA	9q31.1		rs2740488-A	0.734687	8E-9		0.0260889	[0.017-0.035] unit increase	NR [11722792] (imputed)	N
1406	chr9	107661741	107661742	rs2740488	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in HDL	115,082 European ancestry individuals	NA	9q31.1		rs2740488-A	0.734687	3E-22		0.0410473	[0.033-0.049] unit increase	NR [11722792] (imputed)	N
1406	chr9	107661741	107661742	rs2740488	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphoglycerides levels	115,006 European ancestry individuals	NA	9q31.1		rs2740488-A	0.734682	1E-25		0.0462907	[0.038-0.055] unit increase	NR [11722792] (imputed)	N
1406	chr9	107661741	107661742	rs2740488	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphatidylcholine levels	115,006 European ancestry individuals	NA	9q31.1		rs2740488-A	0.734682	2E-27		0.0475662	[0.039-0.056] unit increase	NR [11722792] (imputed)	N
1406	chr9	107661741	107661742	rs2740488	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-6 fatty acid levels	115,006 European ancestry individuals	NA	9q31.1		rs2740488-A	0.734682	2E-27		0.0496352	[0.041-0.059] unit increase	NR [11722792] (imputed)	N
1406	chr9	107661741	107661742	rs2740488	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Monounsaturated fatty acid levels	115,006 European ancestry individuals	NA	9q31.1		rs2740488-A	0.734682	1E-9		0.0279599	[0.019-0.037] unit increase	NR [11722792] (imputed)	N
1406	chr9	107661741	107661742	rs2740488	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Linoleic acid levels	115,006 European ancestry individuals	NA	9q31.1		rs2740488-A	0.734682	2E-25		0.0479054	[0.039-0.057] unit increase	NR [11722792] (imputed)	N
1406	chr9	107661741	107661742	rs2740488	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	LDL cholesterol levels	115,082 European ancestry individuals	NA	9q31.1		rs2740488-A	0.734687	2E-12		0.0328926	[0.024-0.042] unit increase	NR [11722792] (imputed)	N
1406	chr9	107661741	107661742	rs2740488	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	HDL cholesterol levels	115,082 European ancestry individuals	NA	9q31.1		rs2740488-A	0.734687	1E-25		0.0438242	[0.036-0.052] unit increase	NR [11722792] (imputed)	N
1406	chr9	107661741	107661742	rs2740488	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	9q31.1		rs2740488-A	0.734666	2E-17		0.0354111	[0.027-0.044] unit decrease	NR [11722792] (imputed)	N
1406	chr9	107661741	107661742	rs2740488	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	9q31.1		rs2740488-A	0.734687	9E-40		0.0586443	[0.05-0.067] unit increase	NR [11722792] (imputed)	N
1406	chr9	107661741	107661742	rs2740488	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	9q31.1		rs2740488-A	0.734687	3E-32		0.0491764	[0.041-0.057] unit increase	NR [11722792] (imputed)	N
1406	chr9	107661741	107661742	rs2740488	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	9q31.1		rs2740488-A	0.734687	1E-9		0.0266889	[0.018-0.035] unit increase	NR [11722792] (imputed)	N
1406	chr9	107661741	107661742	rs2740488	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small HDL	115,082 European ancestry individuals	NA	9q31.1		rs2740488-A	0.734687	3E-24		0.0467307	[0.038-0.056] unit increase	NR [11722792] (imputed)	N
1406	chr9	107661741	107661742	rs2740488	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	9q31.1		rs2740488-A	0.734687	1E-9		0.0284768	[0.019-0.038] unit increase	NR [11722792] (imputed)	N
1406	chr9	107661741	107661742	rs2740488	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	9q31.1		rs2740488-A	0.734687	6E-24		0.0429908	[0.035-0.051] unit increase	NR [11722792] (imputed)	N
1406	chr9	107661741	107661742	rs2740488	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large LDL	115,082 European ancestry individuals	NA	9q31.1		rs2740488-A	0.734687	2E-13		0.0339704	[0.025-0.043] unit increase	NR [11722792] (imputed)	N
1406	chr9	107661741	107661742	rs2740488	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	9q31.1		rs2740488-A	0.734687	3E-17		0.0347326	[0.027-0.043] unit increase	NR [11722792] (imputed)	N
1406	chr9	107661741	107661742	rs2740488	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in LDL	115,082 European ancestry individuals	NA	9q31.1		rs2740488-A	0.734687	1E-11		0.031373	[0.022-0.04] unit increase	NR [11722792] (imputed)	N
1406	chr9	107661741	107661742	rs2740488	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in IDL	115,082 European ancestry individuals	NA	9q31.1		rs2740488-A	0.734687	2E-9		0.027145	[0.018-0.036] unit increase	NR [11722792] (imputed)	N
1406	chr9	107661741	107661742	rs2740488	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in HDL	115,082 European ancestry individuals	NA	9q31.1		rs2740488-A	0.734687	6E-30		0.0472246	[0.039-0.055] unit increase	NR [11722792] (imputed)	N
1406	chr9	107661741	107661742	rs2740488	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large HDL particles	115,082 European ancestry individuals	NA	9q31.1		rs2740488-A	0.734687	2E-25		0.0440638	[0.036-0.052] unit increase	NR [11722792] (imputed)	N
1406	chr9	107661741	107661742	rs2740488	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small LDL particles	115,082 European ancestry individuals	NA	9q31.1		rs2740488-A	0.734687	2E-9		0.0280884	[0.019-0.037] unit increase	NR [11722792] (imputed)	N
1406	chr9	107661741	107661742	rs2740488	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium LDL particles	115,082 European ancestry individuals	NA	9q31.1		rs2740488-A	0.734687	3E-8		0.0261226	[0.017-0.035] unit increase	NR [11722792] (imputed)	N
1406	chr9	107661741	107661742	rs2740488	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium HDL particles	115,082 European ancestry individuals	NA	9q31.1		rs2740488-A	0.734687	3E-23		0.0428814	[0.034-0.051] unit increase	NR [11722792] (imputed)	N
1406	chr9	107661741	107661742	rs2740488	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	9q31.1		rs2740488-A	0.734687	4E-25		0.0425446	[0.034-0.051] unit increase	NR [11722792] (imputed)	N
1406	chr9	107661741	107661742	rs2740488	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of HDL particles	115,082 European ancestry individuals	NA	9q31.1		rs2740488-A	0.734687	1E-28		0.0489686	[0.04-0.058] unit increase	NR [11722792] (imputed)	N
1406	chr9	107661741	107661742	rs2740488	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Clinical LDL cholesterol levels	115,082 European ancestry individuals	NA	9q31.1		rs2740488-A	0.734687	2E-8		0.0260499	[0.017-0.035] unit increase	NR [11722792] (imputed)	N
1406	chr9	107661741	107661742	rs2740488	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	9q31.1		rs2740488-A	0.734687	1E-14		0.0324812	[0.024-0.041] unit increase	NR [11722792] (imputed)	N
1406	chr9	107661741	107661742	rs2740488	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small LDL	115,082 European ancestry individuals	NA	9q31.1		rs2740488-A	0.734687	4E-9		0.0275556	[0.018-0.037] unit increase	NR [11722792] (imputed)	N
1406	chr9	107661741	107661742	rs2740488	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium LDL	115,082 European ancestry individuals	NA	9q31.1		rs2740488-A	0.734687	8E-9		0.0271167	[0.018-0.036] unit increase	NR [11722792] (imputed)	N
1406	chr9	107661741	107661742	rs2740488	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium HDL	115,082 European ancestry individuals	NA	9q31.1		rs2740488-A	0.734687	7E-18		0.0373153	[0.029-0.046] unit increase	NR [11722792] (imputed)	N
1406	chr9	107661741	107661742	rs2740488	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large LDL	115,082 European ancestry individuals	NA	9q31.1		rs2740488-A	0.734687	4E-14		0.035163	[0.026-0.044] unit increase	NR [11722792] (imputed)	N
1406	chr9	107661741	107661742	rs2740488	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	9q31.1		rs2740488-A	0.734687	6E-18		0.035787	[0.028-0.044] unit increase	NR [11722792] (imputed)	N
1406	chr9	107661741	107661742	rs2740488	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in LDL	115,082 European ancestry individuals	NA	9q31.1		rs2740488-A	0.734687	2E-12		0.0329855	[0.024-0.042] unit increase	NR [11722792] (imputed)	N
1406	chr9	107661741	107661742	rs2740488	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in IDL	115,082 European ancestry individuals	NA	9q31.1		rs2740488-A	0.734687	1E-8		0.0259768	[0.017-0.035] unit increase	NR [11722792] (imputed)	N
1406	chr9	107661741	107661742	rs2740488	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	9q31.1		rs2740488-A	0.734687	5E-24		0.0426304	[0.034-0.051] unit increase	NR [11722792] (imputed)	N
1406	chr9	107661741	107661742	rs2740488	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	9q31.1		rs2740488-A	0.734687	2E-13		0.03124	[0.023-0.04] unit increase	NR [11722792] (imputed)	N
1406	chr9	107661741	107661742	rs2740488	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small LDL	115,082 European ancestry individuals	NA	9q31.1		rs2740488-A	0.734687	3E-8		0.0259776	[0.017-0.035] unit increase	NR [11722792] (imputed)	N
1406	chr9	107661741	107661742	rs2740488	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	9q31.1		rs2740488-A	0.734687	2E-9		0.028054	[0.019-0.037] unit increase	NR [11722792] (imputed)	N
1406	chr9	107661741	107661742	rs2740488	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	9q31.1		rs2740488-A	0.734687	4E-19		0.0385944	[0.03-0.047] unit increase	NR [11722792] (imputed)	N
1406	chr9	107661741	107661742	rs2740488	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large LDL	115,082 European ancestry individuals	NA	9q31.1		rs2740488-A	0.734687	4E-14		0.0350815	[0.026-0.044] unit increase	NR [11722792] (imputed)	N
1406	chr9	107661741	107661742	rs2740488	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	9q31.1		rs2740488-A	0.734687	8E-18		0.0355274	[0.027-0.044] unit increase	NR [11722792] (imputed)	N
1406	chr9	107661741	107661742	rs2740488	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in IDL	115,082 European ancestry individuals	NA	9q31.1		rs2740488-A	0.734687	5E-9		0.0264669	[0.018-0.035] unit increase	NR [11722792] (imputed)	N
1406	chr9	107661741	107661742	rs2740488	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	9q31.1		rs2740488-A	0.734687	2E-16		0.0340439	[0.026-0.042] unit increase	NR [11722792] (imputed)	N
1406	chr9	107661741	107661742	rs2740488	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein A1 levels	115,082 European ancestry individuals	NA	9q31.1		rs2740488-A	0.734687	3E-31		0.0498503	[0.041-0.058] unit increase	NR [11722792] (imputed)	N
1406	chr9	107661741	107661742	rs2740488	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	9q31.1		rs2740488-C	NR	2E-109		0.0487	[0.044-0.053] unit decrease	Affymetrix, Illumina [20536134] (imputed)	N
1406	chr9	107661741	107661742	rs2740488	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	9q31.1		rs2740488-C	NR	4E-19		0.0213	[0.017-0.026] unit decrease	Affymetrix, Illumina [20521447] (imputed)	N
1406	chr9	107661741	107661742	rs2740488	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	9q31.1		rs2740488-C	NR	6E-232		0.0753	[0.071-0.08] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
1406	chr9	107661741	107661742	rs2740488	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Stem cell factor levels	21,758 European ancestry individuals	9,173 individuals	9q31.1		rs2740488-A	0.76	4E-27		0.1065	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1406	chr9	107661741	107661742	rs2740488	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	9q31.1	ABCA1	rs2740488-A	0.734535	8E-27		0.0253762	[0.021-0.03] unit increase	Affymetrix [NR] (imputed)	N
1406	chr9	107661741	107661742	rs2740488	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	9q31.1	ABCA1	rs2740488-A	0.734673	4E-222		0.0687851	[0.065-0.073] unit increase	Affymetrix [NR] (imputed)	N
1406	chr9	107661741	107661742	rs2740488	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	9q31.1	ABCA1	rs2740488-A	0.734464	1E-286		0.0805177	[0.076-0.085] unit increase	Affymetrix [NR] (imputed)	N
1406	chr9	107661741	107661742	rs2740488	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	9q31.1	ABCA1	rs2740488-?	NR	5E-37		0.037	[0.032-0.042] unit decrease	Affymetrix [5701386] (imputed)	N
1406	chr9	107661741	107661742	rs2740488	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	9q31.1	NR	rs2740488-?	NR	4E-6		1.708998	[0.99-2.43] unit decrease	Illumina [32003504] (imputed)	N
1406	chr9	107661741	107661742	rs2740488	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	9q31.1	NR	rs2740488-?	NR	2E-7		0.6230334	[0.39-0.86] unit decrease	Illumina [31978362] (imputed)	N
1406	chr9	107661741	107661742	rs2740488	30805717	Zhu Z	2019-02-25	Hum Genet	Shared genetic architecture between metabolic traits and Alzheimer's disease: a large-scale genome-wide cross-trait analysis.	Alzheimer's disease or HDL levels (pleiotropy)	54,162 European ancestry cases, 60,812 European ancestry individuals	NA	9q31.1	ABCA1	rs2740488-?		9E-33				NR [NR]	N
1406	chr9	107661741	107661742	rs2740488	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9q31.1	NR	rs2740488-A	NR	4E-9		0.026	unit increase	Affymetrix [at least 7091467] (imputed)	N
1406	chr9	107661741	107661742	rs2740488	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9q31.1	NR	rs2740488-A	0.748	4E-8	(EA)	0.027	unit increase	Affymetrix [at least 7091467] (imputed)	N
1406	chr9	107661741	107661742	rs2740488	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9q31.1	NR	rs2740488-A	NR	1E-35		0.061	unit increase	Affymetrix [at least 7091467] (imputed)	N
1406	chr9	107661741	107661742	rs2740488	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9q31.1	NR	rs2740488-A	0.748	2E-30	(EA)	0.062	unit increase	Affymetrix [at least 7091467] (imputed)	N
1406	chr9	107661741	107661742	rs2740488	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9q31.1	NR	rs2740488-A	NR	4E-9		0.03	unit increase	Affymetrix [at least 7091467] (imputed)	N
1406	chr9	107661741	107661742	rs2740488	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9q31.1	NR	rs2740488-A	0.748	2E-7	(EA)	0.029	unit increase	Affymetrix [at least 7091467] (imputed)	N
1406	chr9	107661741	107661742	rs2740488	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9q31.1	NR	rs2740488-A	NR	3E-53		0.062	unit increase	Affymetrix [at least 7091467] (imputed)	N
1406	chr9	107661741	107661742	rs2740488	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9q31.1	NR	rs2740488-A	0.817	4E-6	(East Asian)	0.079	unit increase	Affymetrix [at least 7091467] (imputed)	N
1406	chr9	107661741	107661742	rs2740488	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9q31.1	NR	rs2740488-A	0.748	3E-49	(EA)	0.066	unit increase	Affymetrix [at least 7091467] (imputed)	N
1406	chr9	107661741	107661742	rs2740488	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	HDL cholesterol	19,223 British ancestry individuals from 6863 families.	NA	9q31.1	ABCA1	rs2740488-C	0.2745	3E-8		0.06913026	[0.045-0.093] mg/dl decrease	Illumina [24111857] (imputed)	N
1406	chr9	107661741	107661742	rs2740488	26691988	Fritsche LG	2015-12-21	Nat Genet	A large genome-wide association study of age-related macular degeneration highlights contributions of rare and common variants.	Advanced age-related macular degeneration	16,144 European ancestry cases, 17,832 European ancestry controls	473 Asian ancestry cases, 1,099 Asian ancestry controls, 52 African ancestry cases, 361 African ancestry cases, 254 other non-European ancestry cases, 694 other non-European ancestry controls	9q31.1	ABCA1	rs2740488-?	NR	1E-8	(EA)	1.1111112		Illumina [12023830] (imputed)	N
1406	chr9	107661741	107661742	rs2740488	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	HDL cholesterol	up to 62,166 European ancestry individuals	NA	9q31.1	ABCA1	rs2740488-A	0.76	2E-34		0.086	[0.072-0.1] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
1406	chr9	107661741	107661742	rs2740488	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	Cholesterol, total	up to 62,166 European ancestry individuals	NA	9q31.1	ABCA1	rs2740488-A	0.76	2E-22		0.067	[0.053-0.081] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
1406	chr9	107662303	107662304	rs73664373	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x short total sleep time interaction (2df test)	3,007 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,474 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, up to 11,901 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,567 European ancestry controls, 4,047 Hispanic/Latino controls	up to 221 African American short sleepers, 629 East Asian ancestry short sleepers, up to 9,585 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 2,504 East Asian ancestry controls, up to 38,027 European ancestry controls, 10,061 Hispanic controls	9q31.1	ABCA1	rs73664373-?	NR	2E-21		0.01484	[0.011-0.018] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1406	chr9	107662304	107662305	rs73664374	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x long total sleep time interaction (2df test)	2,933 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, up to 7,870 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,975 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 32,171 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 616 East Asian ancestry long sleepers, up to 9,486 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 929 African American controls, 2,517 East Asian ancestry controls, up to 38,126 European ancestry controls, 10,063 Hispanic controls	9q31.1	ABCA1	rs73664374-?	NR	4E-18		0.01437	[0.011-0.018] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
1406	chr9	107663761	107663762	rs77083720	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	9q31.1	ABCA1	rs77083720-G	NR	8E-6	(men)	0.147426	[0.083-0.212] unit increase	Illumina [13520550] (imputed)	N
1406	chr9	107664300	107664301	rs1883025	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	9q31.1		rs1883025-C	0.745564	2E-11		0.0317347	[0.022-0.041] unit decrease	NR [11722792] (imputed)	N
1406	chr9	107664300	107664301	rs1883025	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium HDL	115,082 European ancestry individuals	NA	9q31.1		rs1883025-C	0.745564	6E-13		0.0318693	[0.023-0.041] unit increase	NR [11722792] (imputed)	N
1406	chr9	107664300	107664301	rs1883025	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small HDL particles	115,082 European ancestry individuals	NA	9q31.1		rs1883025-C	0.745564	5E-8		0.0259046	[0.017-0.035] unit increase	NR [11722792] (imputed)	N
1406	chr9	107664300	107664301	rs1883025	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for LDL particles	115,082 European ancestry individuals	NA	9q31.1		rs1883025-C	0.745564	3E-8		0.0255562	[0.017-0.035] unit decrease	NR [11722792] (imputed)	N
1406	chr9	107664300	107664301	rs1883025	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	9q31.1		rs1883025-T	NR	1E-14		0.0176	[0.013-0.022] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
1406	chr9	107664300	107664301	rs1883025	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls, 33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	9q31.1		rs1883025-T	NR	1E-22		0.0533	[0.043-0.064] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1406	chr9	107664300	107664301	rs1883025	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	9q31.1		rs1883025-T	0.28096034	5E-15		0.080321625	[0.06-0.1] unit decrease	Illumina [13429980] (imputed)	N
1406	chr9	107664300	107664301	rs1883025	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	74,970 East Asian ancestry individuals	NA	9q31.1		rs1883025-T	0.278842	9E-83		0.100492	[0.09-0.111] unit decrease	Illumina [13465896] (imputed)	N
1406	chr9	107664300	107664301	rs1883025	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	9q31.1	ABCA1	rs1883025-T	NR	1E-9		0.019786	[0.013-0.026] unit decrease	Affymetrix [319769] (imputed)	N
1406	chr9	107664300	107664301	rs1883025	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	9q31.1	ABCA1	rs1883025-T	NR	6E-10		0.0200799	[0.014-0.026] unit decrease	Affymetrix [319769] (imputed)	N
1406	chr9	107664300	107664301	rs1883025	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	9q31.1	ABCA1	rs1883025-?	NR	1E-10		0.0194	[0.014-0.025] unit decrease	Affymetrix [5701386] (imputed)	N
1406	chr9	107664300	107664301	rs1883025	31694877	Nishida Y	2019-11-06	J Lipid Res	The interaction between ABCA1 polymorphism and physical activity on the HDL-cholesterol levels in a Japanese population.	HDL cholesterol levels	2,431 Japanese ancestry women	3,109 Japanese ancestry women	9q31.1	ABCA1	rs1883025-C	0.7121	2E-12		0.0326	[0.024-0.042] unit increase	Illumina [7094228] (imputed)	N
1406	chr9	107664300	107664301	rs1883025	31694877	Nishida Y	2019-11-06	J Lipid Res	The interaction between ABCA1 polymorphism and physical activity on the HDL-cholesterol levels in a Japanese population.	HDL cholesterol levels	2,231 Japanese ancestry men	2,599 Japanese ancestry men	9q31.1	ABCA1	rs1883025-C	0.7188	5E-6		0.0237	[0.014-0.034] unit increase	Illumina [7094228] (imputed)	N
1406	chr9	107664300	107664301	rs1883025	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	9q31.1	NR	rs1883025-?	NR	1E-11		0.8196153	[0.58-1.06] unit decrease	Illumina [31978362] (imputed)	N
1406	chr9	107664300	107664301	rs1883025	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls	NA	9q31.1	ABCA1	rs1883025-T	0.254856	3E-11		0.042749953	[0.03-0.055] unit decrease	Affymetrix [7288503] (imputed)	N
1406	chr9	107664300	107664301	rs1883025	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	HDL cholesterol levels	up to 23,761 African ancestry individuals, 13,171 Asian ancestry individuals, up to 90,272 European ancestry individuals, 6,620 Hispanic individuals	NA	9q31.1		rs1883025-T	0.2753	1E-25		0.0129	[0.011-0.015] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1406	chr9	107664300	107664301	rs1883025	30718733	Moon S	2019-02-04	Sci Rep	The Korea Biobank Array: Design and Identification of Coding Variants Associated with Blood Biochemical Traits.	High density lipoprotein cholesterol levels	6,949 Korean ancestry individuals	6,000 Korean ancestry individuals	9q31.1	ABCA1	rs1883025-T	0.255	2E-11		0.0279	[0.02-0.036] unit decrease	Affymetrix [at least 805769] (imputed)	N
1406	chr9	107664300	107664301	rs1883025	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	9q31.1		rs1883025-?	NR	3E-12				NR [~ 8900000] (imputed)	N
1406	chr9	107664300	107664301	rs1883025	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9q31.1	NR	rs1883025-C	NR	1E-9		0.026	unit increase	Affymetrix [at least 7091467] (imputed)	N
1406	chr9	107664300	107664301	rs1883025	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9q31.1	NR	rs1883025-C	0.738	5E-9	(EA)	0.028	unit increase	Affymetrix [at least 7091467] (imputed)	N
1406	chr9	107664300	107664301	rs1883025	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9q31.1	NR	rs1883025-C	NR	1E-36		0.059	unit increase	Affymetrix [at least 7091467] (imputed)	N
1406	chr9	107664300	107664301	rs1883025	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9q31.1	NR	rs1883025-C	0.738	4E-30	(EA)	0.06	unit increase	Affymetrix [at least 7091467] (imputed)	N
1406	chr9	107664300	107664301	rs1883025	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9q31.1	NR	rs1883025-C	NR	2E-8		0.027	unit increase	Affymetrix [at least 7091467] (imputed)	N
1406	chr9	107664300	107664301	rs1883025	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9q31.1	NR	rs1883025-C	0.738	6E-7	(EA)	0.027	unit increase	Affymetrix [at least 7091467] (imputed)	N
1406	chr9	107664300	107664301	rs1883025	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9q31.1	NR	rs1883025-C	NR	2E-60		0.063	unit increase	Affymetrix [at least 7091467] (imputed)	N
1406	chr9	107664300	107664301	rs1883025	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9q31.1	NR	rs1883025-C	0.738	7E-51	(EA)	0.064	unit increase	Affymetrix [at least 7091467] (imputed)	N
1406	chr9	107664300	107664301	rs1883025	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9q31.1	NR	rs1883025-C	0.725	1E-8	(East Asian)	0.084	unit increase	Affymetrix [at least 7091467] (imputed)	N
1406	chr9	107664300	107664301	rs1883025	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	High density lipoprotein cholesterol levels	70,657 Japanese ancestry individuals	NA	9q31.1	ABCA1	rs1883025-?	NR	3E-76		0.1081	[0.097-0.12] unit decrease novel	Illumina [6108953] (imputed)	N
1406	chr9	107664300	107664301	rs1883025	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Total cholesterol levels	32,576 East Asian ancestry individuals, 187,365 European ancestry individuals	10,855 Chinese ancestry individuals	9q31.1	ABCA1	rs1883025-T	0.248	2E-14	(Asian initial, BMI unadjusted)	0.0735	[0.055-0.092] unit decrease	Affymetrix, Illumina [up to 1900000] (imputed)	N
1406	chr9	107664300	107664301	rs1883025	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Total cholesterol levels	32,576 East Asian ancestry individuals, 187,365 European ancestry individuals	10,855 Chinese ancestry individuals	9q31.1	ABCA1	rs1883025-T	0.243	4E-64	(Trans-ethnic initial)	0.0671	[0.059-0.075] unit decrease (EA Beta values)	Affymetrix, Illumina [up to 1900000] (imputed)	N
1406	chr9	107664300	107664301	rs1883025	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Total cholesterol levels	22,814 East Asian ancestry individuals	57,490 East Asian ancestry individuals	9q31.1	ABCA1	rs1883025-T	0.26	1E-9	(BMI unadjusted)	0.067	[0.045-0.089] unit decrease	Affymetrix, Illumina [~ 2400000] (imputed)	N
1406	chr9	107664300	107664301	rs1883025	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	HDL cholesterol levels	34,930 East Asian ancestry individuals, 187,167 European ancestry individuals	8,741 Chinese ancestry individuals	9q31.1	ABCA1	rs1883025-T	0.246	7E-26	(Asian initial, BMI unadjusted)	0.0963	[0.078-0.114] unit decrease	Affymetrix, Illumina [~ 1900000] (imputed)	N
1406	chr9	107664300	107664301	rs1883025	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	HDL cholesterol levels	34,930 East Asian ancestry individuals, 187,167 European ancestry individuals	8,741 Chinese ancestry individuals	9q31.1	ABCA1	rs1883025-T	0.243	7E-85	(Trans-ethnic initial)	0.0698	[0.062-0.078] unit decrease (EA Beta values)	Affymetrix, Illumina [~ 1900000] (imputed)	N
1406	chr9	107664300	107664301	rs1883025	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	HDL cholesterol levels	25,169 East Asian ancestry individuals	45,953 East Asian ancestry individuals	9q31.1	ABCA1	rs1883025-T	0.26	2E-18	(BMI unadjusted)	0.091	[0.071-0.111] unit decrease	Affymetrix, Illumina [~ 2400000] (imputed)	N
1406	chr9	107664300	107664301	rs1883025	26690388	Tang CS	2015-12-22	Nat Commun	Exome-wide association analysis reveals novel coding sequence variants associated with lipid traits in Chinese.	HDL cholesterol levels	12,685 Chinese ancestry individuals	NA	9q31.1	ABCA1	rs1883025-T	0.224	2E-9		0.09	[0.061-0.119] unit decrease	Illumina [286795]	N
1406	chr9	107664300	107664301	rs1883025	26160806	Proust C	2015-08-01	Circ Cardiovasc Genet	Contribution of Rare and Common Genetic Variants to Plasma Lipid Levels and Carotid Stiffness and Geometry: A Substudy of the Paris Prospective Study 3.	HDL cholesterol	3,681 individuals	NA	9q31.1	ABCA1	rs1883025-A	0.271	3E-7		0.03	[0.018-0.042] unit decrease	Illumina [101597]	N
1406	chr9	107664300	107664301	rs1883025	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	9q31.1	ABCA1	rs1883025-T	0.25	2E-65		0.07	[NR] unit decrease	NR [NR] (imputed)	N
1406	chr9	107664300	107664301	rs1883025	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	9q31.1	ABCA1	rs1883025-T	0.25	6E-53		0.067	[NR] unit decrease	NR [NR] (imputed)	N
1406	chr9	107664300	107664301	rs1883025	22399527	Kristiansson K	2012-03-07	Circ Cardiovasc Genet	Genome-wide screen for metabolic syndrome susceptibility Loci reveals strong lipid gene contribution but no evidence for common genetic basis for clustering of metabolic syndrome traits.	Metabolic syndrome	2,637 European ancestry cases, 7,927 European ancestry controls	NA	9q31.1	ABCA1	rs1883025-T	0.19	6E-10	(HDL)	0.1	[NR] mmol/l decrease	Illumina [1257079] (imputed)	N
1406	chr9	107664300	107664301	rs1883025	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	HDL cholesterol	99,900 European ancestry individuals	NA	9q31.1	ABCA1	rs1883025-T	0.25	2E-33		0.94	[0.76-1.12] mg/dL decrease	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1406	chr9	107664300	107664301	rs1883025	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	Cholesterol, total	100,184 European ancestry individuals	NA	9q31.1	ABCA1	rs1883025-T	0.25	3E-27		2.24	[1.77-2.71] mg/dL decrease	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1406	chr9	107664300	107664301	rs1883025	19060906	Kathiresan S	2008-12-07	Nat Genet	Common variants at 30 loci contribute to polygenic dyslipidemia.	HDL cholesterol	19,840 European ancestry individuals	Up to 20,623 European ancestry individuals	9q31.1	ABCA1	rs1883025-T	0.26	1E-9		0.08	[0.04-0.12] s.d. decrease	Affymetrix, Illumina [~ 2600000] (imputed)	N
1406	chr9	107665738	107665739	rs2575876	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	3-Hydroxybutyrate levels	113,594 European ancestry individuals	NA	9q31.1		rs2575876-G	0.747993	1E-11		0.0319159	[0.023-0.041] unit increase	NR [11722792] (imputed)	N
1406	chr9	107665738	107665739	rs2575876	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	135,808 East Asian ancestry individuals	NA	9q31.1		rs2575876-A	0.272866	3E-43		0.0549584	[0.047-0.063] unit decrease	Illumina [13476599] (imputed)	N
1406	chr9	107665738	107665739	rs2575876	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Total cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	9q31.1	ABCA1	rs2575876-?		9E-51		0.0579	[0.05-0.066] unit increase	Illumina [31500000] (imputed)	N
1406	chr9	107665738	107665739	rs2575876	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	High density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	9q31.1	ABCA1	rs2575876-?		2E-86		0.0935	[0.084-0.103] unit increase	Illumina [31500000] (imputed)	N
1406	chr9	107665738	107665739	rs2575876	32226016	Hu Y	2020-03-30	PLoS Genet	Minority-centric meta-analyses of blood lipid levels identify novel loci in the Population Architecture using Genomics and Epidemiology (PAGE) study.	High density lipoprotein cholesterol levels	17,641 African American individuals, 22,830 Hispanics ancestry individuals, 2,378 East Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals, 22,887 European ancestry individuals	up to 71,987 African American individuals, up to 34,899 Hispanics ancestry individuals, up to 315,133 European ancestry individuals, up to 9,593 Asian ancestry individuals, up to 94,674 European ancestry, East Asian ancestry, African American, South Asian ancestry, Hispanic individuals	9q31.1		rs2575876-?	NR	5E-14		0.067	[0.049-0.085] mg/dL decrease	Affymetrix, Illumina [NR] (imputed)	N
1406	chr9	107665738	107665739	rs2575876	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x short total sleep time interaction (2df test)	3,007 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,474 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, up to 11,901 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,567 European ancestry controls, 4,047 Hispanic/Latino controls	up to 221 African American short sleepers, 629 East Asian ancestry short sleepers, up to 9,585 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 2,504 East Asian ancestry controls, up to 38,027 European ancestry controls, 10,061 Hispanic controls	9q31.1	ABCA1	rs2575876-?	NR	2E-38		0.01299	[0.011-0.015] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
1406	chr9	107665738	107665739	rs2575876	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x long total sleep time interaction (2df test)	2,933 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, up to 7,870 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,975 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 32,171 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 616 East Asian ancestry long sleepers, up to 9,486 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 929 African American controls, 2,517 East Asian ancestry controls, up to 38,126 European ancestry controls, 10,063 Hispanic controls	9q31.1	ABCA1	rs2575876-?	NR	9E-40		0.01343	[0.011-0.016] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
1406	chr9	107665738	107665739	rs2575876	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	9q31.1	NR	rs2575876-?	NR	5E-14		0.9589041	[0.71-1.21] unit decrease	Illumina [31978362] (imputed)	N
1406	chr9	107665738	107665739	rs2575876	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	9q31.1	ABCA1	rs2575876-A	NR	5E-10	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1406	chr9	107665738	107665739	rs2575876	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	9q31.1	ABCA1	rs2575876-A	NR	4E-10				Affymetrix, Illumina [NR] (imputed)	N
1406	chr9	107665738	107665739	rs2575876	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	9q31.1	ABCA1	rs2575876-A	NR	7E-11				Affymetrix, Illumina [NR] (imputed)	N
1406	chr9	107665738	107665739	rs2575876	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	9q31.1	ABCA1	rs2575876-A	NR	5E-10	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1406	chr9	107665738	107665739	rs2575876	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	9q31.1	ABCA1	rs2575876-A	NR	1E-7		0.01	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1406	chr9	107665738	107665739	rs2575876	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	9q31.1	ABCA1	rs2575876-A	NR	1E-6	(EA)	0.015	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1406	chr9	107665738	107665739	rs2575876	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	9q31.1	ABCA1	rs2575876-A	NR	6E-10	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1406	chr9	107665738	107665739	rs2575876	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	9q31.1	ABCA1	rs2575876-A	NR	3E-13				Affymetrix, Illumina [NR] (imputed)	N
1406	chr9	107665738	107665739	rs2575876	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	9q31.1	ABCA1	rs2575876-A	NR	5E-10	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1406	chr9	107665738	107665739	rs2575876	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	9q31.1	ABCA1	rs2575876-A	NR	2E-13				Affymetrix, Illumina [NR] (imputed)	N
1406	chr9	107665738	107665739	rs2575876	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	9q31.1	ABCA1	rs2575876-A	NR	2E-8		0.894	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1406	chr9	107665738	107665739	rs2575876	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	9q31.1	ABCA1	rs2575876-A	NR	2E-6	(EA)	0.994	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1406	chr9	107665738	107665739	rs2575876	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	9q31.1	ABCA1	rs2575876-A	NR	2E-6		0.851	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1406	chr9	107665738	107665739	rs2575876	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	9q31.1	ABCA1	rs2575876-A	NR	9E-154				Affymetrix, Illumina [NR] (imputed)	N
1406	chr9	107665738	107665739	rs2575876	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	9q31.1	ABCA1	rs2575876-A	NR	3E-7	(Hispanic)			Affymetrix, Illumina [NR] (imputed)	N
1406	chr9	107665738	107665739	rs2575876	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	9q31.1	ABCA1	rs2575876-A	NR	2E-79	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1406	chr9	107665738	107665739	rs2575876	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	9q31.1	ABCA1	rs2575876-A	NR	2E-74	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
1406	chr9	107665738	107665739	rs2575876	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	9q31.1	ABCA1	rs2575876-A	NR	9E-80	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
1406	chr9	107665738	107665739	rs2575876	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	9q31.1	ABCA1	rs2575876-A	NR	6E-162				Affymetrix, Illumina [NR] (imputed)	N
1406	chr9	107665738	107665739	rs2575876	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	9q31.1	ABCA1	rs2575876-A	NR	2E-81	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1406	chr9	107665738	107665739	rs2575876	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	9q31.1	ABCA1	rs2575876-A	NR	1E-7	(Hispanic)			Affymetrix, Illumina [NR] (imputed)	N
1406	chr9	107665738	107665739	rs2575876	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	9q31.1	ABCA1	rs2575876-A	NR	8E-93		0.019	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1406	chr9	107665738	107665739	rs2575876	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	9q31.1	ABCA1	rs2575876-A	NR	3E-54	(Asian)	0.021	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1406	chr9	107665738	107665739	rs2575876	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	9q31.1	ABCA1	rs2575876-A	NR	1E-45	(EA)	0.019	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1406	chr9	107665738	107665739	rs2575876	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	9q31.1	ABCA1	rs2575876-A	NR	3E-53	(Asian)	0.02126	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1406	chr9	107665738	107665739	rs2575876	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	9q31.1	ABCA1	rs2575876-A	NR	2E-75		0.01865	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1406	chr9	107665738	107665739	rs2575876	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	9q31.1	ABCA1	rs2575876-A	NR	1E-21	(EA)	0.01716	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1406	chr9	107665738	107665739	rs2575876	30670697	Kilpelainen TO	2019-01-22	Nat Commun	Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity.	HDL cholesterol x physical activity interaction (2df test)	7,395 African American inactive individuals, 13,092 African American active individuals, 2,753 Asian ancestry inactive individuals, 3,650 Asian ancestry active individuals, 22,963 European ancestry inactive individuals, 61,939 European ancestry active individuals, 2,829 Hispanic or Latin American inactive individuals, 6,358 Hispanic or Latin American active individuals	1,886 African American inactive individuals, 1,892 African American active individuals, 1,217 South African Black ancestry inactive individuals, 389 South African Black ancestry active individuals, 2,494 East Asian ancestry inactive individuals, 1,947 East Asian ancestry active individuals,  724 South Asian ancestry inactive individuals, 1,425 South Asian ancestry active individuals, 41,042 European ancestry inactive individuals, 66,575 European ancestry active individuals, 2,619 Hispanic inactive individuals, 8,802 Hispanic active individuals	9q31.1	NR	rs2575876-A	0.2448	9E-51				Affymetrix, Illumina [at least 2500000] (imputed)	N
1406	chr9	107665738	107665739	rs2575876	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	9q31.1	ABCA1	rs2575876-A	0.25	1E-32		0.0371	[0.031-0.043] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1406	chr9	107665738	107665739	rs2575876	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Total cholesterol levels	128,305 Japanese ancestry individuals	NA	9q31.1	ABCA1	rs2575876-?	NR	4E-38		0.05618	[0.048-0.065] unit decrease novel	Illumina [6108953] (imputed)	N
1406	chr9	107665738	107665739	rs2575876	27005778	Kettunen J	2016-03-23	Nat Commun	Genome-wide study for circulating metabolites identifies 62 loci and reveals novel systemic effects of LPA.	Metabolite levels (lipoprotein measures)	2,118 Erasmus Rucphen (founder/genetic isolate), 22,807 European ancestry individuals	NA	9q31.1	ABCA1	rs2575876-A	0.19	3E-15	(Total cholesterol in very large HDL)	0.1	[0.08-0.12] unit decrease	Affymetrix, Illumina, Perlegen [12133295] (imputed)	N
1406	chr9	107665738	107665739	rs2575876	26582766	Lu X	2015-11-18	Circ Cardiovasc Genet	Genetic Susceptibility to Lipid Levels and Lipid Change Over Time and Risk of Incident Hyperlipidemia in Chinese Populations.	HDL cholesterol	8,344 Han Chinese ancestry individuals	14,739 Han Chinese ancestry individuals	9q31.1	ABCA1	rs2575876-G	0.79	4E-13		1.006	[0.73-1.28] unit increase	Affymetrix, Illumina [2573667] (imputed)	N
1406	chr9	107665738	107665739	rs2575876	26582766	Lu X	2015-11-18	Circ Cardiovasc Genet	Genetic Susceptibility to Lipid Levels and Lipid Change Over Time and Risk of Incident Hyperlipidemia in Chinese Populations.	Cholesterol, total	8,344 Han Chinese ancestry individuals	14,739 Han Chinese ancestry individuals	9q31.1	ABCA1	rs2575876-G	0.79	1E-16		3.224	[2.46-3.99] unit increase	Affymetrix, Illumina [2573667] (imputed)	N
1406	chr9	107665738	107665739	rs2575876	22286219	Kettunen J	2012-01-29	Nat Genet	Genome-wide association study identifies multiple loci influencing human serum metabolite levels.	Lipid metabolism phenotypes	8,330 European ancestry individuals	NA	9q31.1	ABCA1	rs2575876-?	NR	2E-11	(Tot-C/Est-C)	0.14	[0.1-0.18] unit decrease	Illumina [~ 7700000] (imputed)	N
1406	chr9	107665977	107665978	rs1800978	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in IDL	115,082 European ancestry individuals	NA	9q31.1		rs1800978-C	0.87602	8E-10		0.0378154	[0.026-0.05] unit increase	NR [11722792] (imputed)	N
1406	chr9	107665977	107665978	rs1800978	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-3 fatty acid levels	115,006 European ancestry individuals	NA	9q31.1		rs1800978-C	0.876012	1E-10		0.0387593	[0.027-0.051] unit increase	NR [11722792] (imputed)	N
1406	chr9	107665977	107665978	rs1800978	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Docosahexaenoic acid levels	115,006 European ancestry individuals	NA	9q31.1		rs1800978-C	0.876012	5E-9		0.0348568	[0.023-0.047] unit increase	NR [11722792] (imputed)	N
1406	chr9	107665977	107665978	rs1800978	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	9q31.1		rs1800978-C	0.87602	2E-8		0.0344438	[0.022-0.046] unit decrease	NR [11722792] (imputed)	N
1406	chr9	107665977	107665978	rs1800978	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	9q31.1		rs1800978-C	0.876013	2E-8		0.0334159	[0.022-0.045] unit decrease	NR [11722792] (imputed)	N
1406	chr9	107665977	107665978	rs1800978	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	9q31.1		rs1800978-G	NR	7E-10		0.0166	[0.011-0.022] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
1406	chr9	107665977	107665978	rs1800978	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	9q31.1	ABCA1	rs1800978-G	NR	2E-17		0.0367106	[0.028-0.045] unit decrease	Affymetrix [319769] (imputed)	N
1406	chr9	107665977	107665978	rs1800978	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	9q31.1	ABCA1	rs1800978-G	NR	4E-18		0.0374923	[0.029-0.046] unit decrease	Affymetrix [319769] (imputed)	N
1406	chr9	107665977	107665978	rs1800978	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	9q31.1	ABCA1	rs1800978-C	0.88	3E-9		5.96	z-score increase	Affymetrix [4314223] (imputed)	N
1406	chr9	107665977	107665978	rs1800978	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	9q31.1	ABCA1	rs1800978-C	0.875511	1E-18		0.0267606	[0.021-0.033] unit increase	Affymetrix [NR] (imputed)	N
1406	chr9	107665977	107665978	rs1800978	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	9q31.1	NR	rs1800978-?	NR	2E-19				Affymetrix [~ 8270000] (imputed)	N
1406	chr9	107665977	107665978	rs1800978	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	9q31.1	NR	rs1800978-?	NR	8E-10		1.045572	[0.71-1.38] unit decrease	Illumina [31978362] (imputed)	N
1406	chr9	107665977	107665978	rs1800978	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	9q31.1	NR	rs1800978-C	0.8788	3E-23		0.0262	[0.021-0.031] unit increase	NR [~ 27400000] (imputed)	N
1406	chr9	107665977	107665978	rs1800978	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	9q31.1	NA	rs1800978-C	0.879	9E-15		0.0201	[0.015-0.025] unit increase	NR [~ 27400000] (imputed)	N
1406	chr9	107665977	107665978	rs1800978	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	9q31.1	NR	rs1800978-C	0.879	9E-15		0.0201	[0.015-0.025] unit increase	NR [~ 27400000] (imputed)	N
1406	chr9	107665977	107665978	rs1800978	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9q31.1	NR	rs1800978-C	NR	1E-7		0.03	unit increase	Affymetrix [at least 7091467] (imputed)	N
1406	chr9	107665977	107665978	rs1800978	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9q31.1	NR	rs1800978-C	NR	3E-27		0.066	unit increase	Affymetrix [at least 7091467] (imputed)	N
1406	chr9	107665977	107665978	rs1800978	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9q31.1	NR	rs1800978-C	0.87	6E-21	(EA)	0.065	unit increase	Affymetrix [at least 7091467] (imputed)	N
1406	chr9	107665977	107665978	rs1800978	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9q31.1	NR	rs1800978-C	NR	2E-8		0.035	unit increase	Affymetrix [at least 7091467] (imputed)	N
1406	chr9	107665977	107665978	rs1800978	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9q31.1	NR	rs1800978-C	0.87	4E-6	(EA)	0.033	unit increase	Affymetrix [at least 7091467] (imputed)	N
1406	chr9	107665977	107665978	rs1800978	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9q31.1	NR	rs1800978-C	NR	4E-33		0.06	unit increase	Affymetrix [at least 7091467] (imputed)	N
1406	chr9	107665977	107665978	rs1800978	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9q31.1	NR	rs1800978-C	0.87	3E-30	(EA)	0.064	unit increase	Affymetrix [at least 7091467] (imputed)	N
1406	chr9	107665977	107665978	rs1800978	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	9q31.1	ABCA1	rs1800978-C	0.8664	4E-7		0.0438	[0.027-0.061] unit increase	NR [8041861] (imputed)	N
1406	chr9	107666035	107666035	rs1799777	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	9q31.1	ABCA1	rs1799777-GC	NR	2E-10		0.0278997	[0.019-0.036] unit decrease	Affymetrix [321114] (imputed)	N
1406	chr9	107666035	107666035	rs1799777	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	9q31.1	ABCA1	rs1799777-GC	NR	4E-12		0.0303877	[0.022-0.039] unit decrease	Affymetrix [321169] (imputed)	N
1406	chr9	107666035	107666035	rs1799777	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	9q31.1	ABCA1	rs1799777-?	0.8768	7E-9		0.0265	[0.017-0.036] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1406	chr9	107666413	107666414	rs2254819	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	9q31.1	NR	rs2254819-C	NR	8E-69		0.0418	[0.037-0.047] unit decrease	Affymetrix [9000000] (imputed)	N
1406	chr9	107666413	107666414	rs2254819	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	9q31.1	NR	rs2254819-C	NR	2E-24		0.0243	[0.02-0.029] unit decrease	Affymetrix [9000000] (imputed)	N
1406	chr9	107666413	107666414	rs2254819	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	9q31.1	NR	rs2254819-C	NR	6E-95		0.0515	[0.047-0.056] unit decrease	Affymetrix [9000000] (imputed)	N
1406	chr9	107666413	107666414	rs2254819	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	9q31.1	NR	rs2254819-C	NR	1E-115		0.0571	[0.052-0.062] unit decrease	Affymetrix [9000000] (imputed)	N
1406	chr9	107669072	107669073	rs13284054	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	9q31.1		rs13284054-T	0.874919	5E-17		0.0519737	[0.04-0.064] unit decrease	NR [11722792] (imputed)	N
1406	chr9	107669072	107669073	rs13284054	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	9q31.1		rs13284054-T	0.874919	1E-10		0.0388161	[0.027-0.051] unit increase	NR [11722792] (imputed)	N
1406	chr9	107669072	107669073	rs13284054	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	9q31.1	ABCA1	rs13284054-C	0.124615	4E-10		0.021567587	[0.015-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1406	chr9	107669072	107669073	rs13284054	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	9q31.1	ABCA1	rs13284054-C	0.12461	3E-10		0.021804672	[0.015-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1406	chr9	107669072	107669073	rs13284054	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	417,580 European ancestry individuals	NA	9q31.1		rs13284054-T	0.882273	5E-9		0.018	[0.012-0.024] unit increase	NR [7250403] (imputed)	N
1406	chr9	107672364	107672365	rs2777795	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	9q31.1	ABCA1	rs2777795-G	0.8982	7E-10	(EA)	0.044	[0.03-0.058] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1406	chr9	107672364	107672365	rs2777795	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	9q31.1	ABCA1	rs2777795-G	0.8982	5E-9		0.0384	[0.025-0.051] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1406	chr9	107672364	107672365	rs2777795	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	9q31.1	ABCA1	rs2777795-G	0.8982	3E-8	(women)	0.0495	[0.032-0.067] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1406	chr9	107672364	107672365	rs2777795	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	9q31.1	ABCA1	rs2777795-G	0.8982	1E-7	(EA, women)	0.0502	[0.032-0.069] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1406	chr9	107672364	107672365	rs2777795	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	9q31.1	ABCA1	rs2777795-G	0.9005	5E-6	(women)	0.0499	[0.029-0.071] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1406	chr9	107672364	107672365	rs2777795	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	9q31.1	ABCA1	rs2777795-G	0.9005	5E-6	(EA, women)	0.0499	[0.029-0.071] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1406	chr9	107672364	107672365	rs2777795	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	9q31.1	ABCA1	rs2777795-G	0.8982	1E-6	(EA)	0.0395	[0.024-0.055] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1406	chr9	107672364	107672365	rs2777795	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	9q31.1	ABCA1	rs2777795-G	0.8982	1E-6		0.0395	[0.024-0.055] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1406	chr9	107672364	107672365	rs2777795	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	9q31.1	ABCA1	rs2777795-?	0.8982	3E-9	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1406	chr9	107672364	107672365	rs2777795	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	9q31.1	ABCA1	rs2777795-?	0.8982	3E-9				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1406	chr9	107672364	107672365	rs2777795	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	9q31.1	ABCA1	rs2777795-?	0.8982	2E-6	(women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1406	chr9	107672364	107672365	rs2777795	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	9q31.1	ABCA1	rs2777795-?	0.8982	2E-6	(EA, women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1406	chr9	107674113	107674114	rs77852426	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	9q31.1	NR	rs77852426-T	NR	3E-9		0.0432	[0.029-0.057] unit decrease	Affymetrix [9000000] (imputed)	N
1406	chr9	107674113	107674114	rs77852426	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	9q31.1	NR	rs77852426-T	NR	2E-11		0.0485	[0.034-0.063] unit decrease	Affymetrix [9000000] (imputed)	N
1406	chr9	107677288	107677289	rs4149263	24024966	Teumer A	2013-08-14	J Clin Periodontol	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (Mean PAL)	up to 4,032 European ancestry individuals	NA	9q31.1	ABCA1	rs4149263-A	0.8	7E-6	(Age 20-81 years)	0.056	[0.032-0.080] unit decrease	Affymetrix, Illumina [up to 17585496] (imputed)	N
1406	chr9	107677931	107677932	rs4149262	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	9q31.1	NR	rs4149262-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1406	chr9	107678277	107678278	rs4149261	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	9q31.1	ABCA1	rs4149261-T	NR	6E-16		0.0392833	[0.03-0.049] unit increase	Affymetrix [319769] (imputed)	N
1406	chr9	107678277	107678278	rs4149261	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	9q31.1	ABCA1	rs4149261-T	NR	7E-16		0.0392089	[0.03-0.049] unit increase	Affymetrix [319769] (imputed)	N
1406	chr9	107678277	107678278	rs4149261	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	9q31.1	ABCA1	rs4149261-T	NR	3E-11		0.032652	[0.023-0.042] unit increase	Affymetrix [321114] (imputed)	N
1406	chr9	107678277	107678278	rs4149261	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	9q31.1	ABCA1	rs4149261-T	NR	2E-12		0.034429	[0.025-0.044] unit increase	Affymetrix [321169] (imputed)	N
1406	chr9	107678277	107678278	rs4149261	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	9q31.1	NR	rs4149261-?	NR	1E-17				Affymetrix [~ 8270000] (imputed)	N
1406	chr9	107680457	107680458	rs2437811	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	9q31.1	NR	rs2437811-T	NR	1E-9		0.0184	[0.013-0.024] unit increase	Affymetrix [9000000] (imputed)	N
1406	chr9	107680457	107680458	rs2437811	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	9q31.1	NR	rs2437811-T	NR	1E-11		0.0205	[0.015-0.026] unit increase	Affymetrix [9000000] (imputed)	N
1406	chr9	107681994	107681995	rs2515616	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	9q31.1	NR	rs2515616-?	NR	2E-11				Affymetrix [~ 8270000] (imputed)	N
1406	chr9	107684229	107684230	rs2472509	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	HDL cholesterol levels	up to 23,761 African ancestry individuals, 13,171 Asian ancestry individuals, up to 90,272 European ancestry individuals, 6,620 Hispanic individuals	NA	9q31.1		rs2472509-T	0.6676	1E-7	(EA)	0.0072	[0.0047-0.0097] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1406	chr9	107684252	107684253	rs2472508	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	9q31.1	ABCA1	rs2472508-A	NR	1E-13		0.0257051	[0.019-0.032] unit decrease	Affymetrix [319769] (imputed)	N
1406	chr9	107684252	107684253	rs2472508	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	9q31.1	ABCA1	rs2472508-A	NR	2E-13		0.0255041	[0.019-0.032] unit decrease	Affymetrix [319769] (imputed)	N
1406	chr9	107684252	107684253	rs2472508	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	9q31.1	ABCA1	rs2472508-A	NR	7E-9		0.020279	[0.013-0.027] unit decrease	Affymetrix [321169] (imputed)	N
1406	chr9	107685588	107685589	rs10991414	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	9q31.1	ABCA1	rs10991414-C	NR	5E-20		0.0375511	[0.03-0.046] unit increase	Affymetrix [319769] (imputed)	N
1406	chr9	107685588	107685589	rs10991414	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	9q31.1	ABCA1	rs10991414-C	NR	2E-20		0.038099	[0.03-0.046] unit increase	Affymetrix [319769] (imputed)	N
1406	chr9	107685588	107685589	rs10991414	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	9q31.1	ABCA1	rs10991414-C	NR	7E-14		0.0309577	[0.023-0.039] unit increase	Affymetrix [321114] (imputed)	N
1406	chr9	107685588	107685589	rs10991414	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	9q31.1	ABCA1	rs10991414-C	NR	2E-15		0.0330084	[0.025-0.041] unit increase	Affymetrix [321169] (imputed)	N
1406	chr9	107686130	107686131	rs2515613	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	9q31.1	ABCA1	rs2515613-G	NR	1E-9		0.01739	[0.012-0.023] unit increase	Affymetrix [319769] (imputed)	N
1406	chr9	107686130	107686131	rs2515613	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	9q31.1	ABCA1	rs2515613-G	NR	1E-9		0.0173634	[0.012-0.023] unit increase	Affymetrix [319769] (imputed)	N
1406	chr9	107686592	107686592	rs76908150	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	9q31.1	ABCA1	rs76908150-TA	NR	1E-31		0.038946	[0.032-0.045] unit increase	Affymetrix [319769] (imputed)	N
1406	chr9	107686592	107686592	rs76908150	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	9q31.1	ABCA1	rs76908150-TA	NR	3E-32		0.0394259	[0.033-0.046] unit increase	Affymetrix [319769] (imputed)	N
1406	chr9	107686592	107686592	rs76908150	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	9q31.1	ABCA1	rs76908150-TA	NR	6E-22		0.0323522	[0.026-0.039] unit increase	Affymetrix [321114] (imputed)	N
1406	chr9	107686592	107686592	rs76908150	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	9q31.1	ABCA1	rs76908150-TA	NR	3E-24		0.0341572	[0.028-0.041] unit increase	Affymetrix [321169] (imputed)	N
1406	chr9	107686822	107686823	rs10820747	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	9q31.1	NR	rs10820747-?	NR	1E-32				Affymetrix [~ 8270000] (imputed)	N
1406	chr9	107686822	107686823	rs10820747	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	9q31.1	NR	rs10820747-?	NR	6E-19				Affymetrix [~ 8270000] (imputed)	N
1406	chr9	107686822	107686823	rs10820747	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	9q31.1		rs10820747-?	NR	6E-30				NR [~ 8900000] (imputed)	N
1406	chr9	107686822	107686823	rs10820747	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	9q31.1	NR	rs10820747-A	0.2404	1E-31		0.0271	[0.023-0.032] unit increase	NR [~ 27400000] (imputed)	N
1406	chr9	107688058	107688059	rs2515609	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	9q31.1	ABCA1	rs2515609-A	NR	5E-9		0.0210756	[0.014-0.028] unit decrease	Affymetrix [319769] (imputed)	N
1406	chr9	107688058	107688059	rs2515609	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	9q31.1	ABCA1	rs2515609-A	NR	2E-9		0.0215412	[0.014-0.029] unit decrease	Affymetrix [319769] (imputed)	N
1406	chr9	107688058	107688059	rs2515609	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	9q31.1	ABCA1	rs2515609-A	NR	6E-9		0.021133	[0.014-0.028] unit decrease	Affymetrix [321114] (imputed)	N
1406	chr9	107688058	107688059	rs2515609	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	9q31.1	ABCA1	rs2515609-A	NR	2E-9		0.0218942	[0.015-0.029] unit decrease	Affymetrix [321169] (imputed)	N
1406	chr9	107688628	107688629	rs10991417	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	9q31.1	ABCA1	rs10991417-C	NR	2E-9		0.0174998	[0.012-0.023] unit decrease	Affymetrix [321788] (imputed)	N
1406	chr9	107688628	107688629	rs10991417	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	9q31.1	ABCA1	rs10991417-C	NR	4E-8		0.0154714	[0.0099-0.021] unit decrease	Affymetrix [321016] (imputed)	N
1406	chr9	107689351	107689352	rs4742929	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	9q31.1	ABCA1	rs4742929-G	NR	2E-34		0.0346606	[0.029-0.04] unit increase	Affymetrix [319769] (imputed)	N
1406	chr9	107689351	107689352	rs4742929	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	9q31.1	ABCA1	rs4742929-G	NR	5E-35		0.0349749	[0.029-0.041] unit increase	Affymetrix [319769] (imputed)	N
1406	chr9	107689351	107689352	rs4742929	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	9q31.1	ABCA1	rs4742929-G	NR	7E-22		0.0274731	[0.022-0.033] unit increase	Affymetrix [321114] (imputed)	N
1406	chr9	107689351	107689352	rs4742929	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	9q31.1	ABCA1	rs4742929-G	NR	4E-25		0.0296606	[0.024-0.035] unit increase	Affymetrix [321169] (imputed)	N
1406	chr9	107690056	107690057	rs2437817	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	9q31.1		rs2437817-A	NR	3E-14		0.0146	[0.011-0.018] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
1406	chr9	107690056	107690057	rs2437817	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	9q31.1	NR	rs2437817-A	NR	7E-12		0.0176	[0.013-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
1406	chr9	107690449	107690450	rs1800977	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	9q31.1	NR	rs1800977-A	0.33	4E-13		0.0141	[0.01-0.018] unit decrease	NR [NR]	N
1406	chr9	107690449	107690450	rs1800977	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	9q31.1	ABCA1	rs1800977-A	0.3184	8E-9		0.0193	[0.013-0.026] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1406	chr9	107690449	107690450	rs1800977	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9q31.1	NR	rs1800977-G	NR	4E-6		0.017	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1406	chr9	107691224	107691225	rs10991419	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	9q31.1	RP11-217B7.2	rs10991419-T	NR	2E-12		0.0317304	[0.023-0.041] unit increase	Affymetrix [319769] (imputed)	N
1406	chr9	107691822	107691823	rs2487048	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Intraocular pressure	25,916 European ancestry individuals, 1,073 Orcadian (founder/genetic isolate) individuals, 2,589 Erasmus Rucphen (founder/genetic isolate) individuals	8,352 Asian ancestry individuals	9q31.1	ABCA1	rs2487048-A	NR	5E-9	(EA)	0.16	[0.1-0.22] unit increase	Affymetrix, Illumina [~ 8000000] (imputed)	N
1406	chr9	107691822	107691823	rs2487048	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Intraocular pressure	25,916 European ancestry individuals, 1,073 Orcadian (founder/genetic isolate) individuals, 2,589 Erasmus Rucphen (founder/genetic isolate) individuals	8,352 Asian ancestry individuals	9q31.1	ABCA1	rs2487048-A	NR	5E-13		0.15	[0.11-0.19] unit increase	Affymetrix, Illumina [~ 8000000] (imputed)	N
1406	chr9	107692241	107692242	rs10124755	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	9q31.1	RP11-217B7.2	rs10124755-C	NR	8E-14		0.0223688	[0.016-0.028] unit increase	Affymetrix [319769] (imputed)	N
1406	chr9	107692241	107692242	rs10124755	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	9q31.1	RP11-217B7.2	rs10124755-C	NR	3E-14		0.0227795	[0.017-0.029] unit increase	Affymetrix [319769] (imputed)	N
1406	chr9	107692241	107692242	rs10124755	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	9q31.1	RP11-217B7.2	rs10124755-C	NR	5E-10		0.0188178	[0.013-0.025] unit increase	Affymetrix [321114] (imputed)	N
1406	chr9	107692241	107692242	rs10124755	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	9q31.1	RP11-217B7.2	rs10124755-C	NR	5E-11		0.0198683	[0.014-0.026] unit increase	Affymetrix [321169] (imputed)	N
1406	chr9	107693139	107693140	rs10991421	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Intraocular pressure	101,939 European ancestry cases	NA	9q31.1	NR	rs10991421-G		1E-9		0.21	[0.15-0.27] unit increase	NR [NR]	N
1406	chr9	107693200	107693201	rs2437812	30104761	Zhou W	2018-08-13	Nat Genet	Efficiently controlling for case-control imbalance and sample relatedness in large-scale genetic association studies.	Glaucoma	4,462 European ancestry cases, 397,761 European ancestry controls	NA	9q31.1	ABCA1, SLC44A1	rs2437812-C	0.423577	1E-14				Affymetrix [28000000] (imputed)	N
1406	chr9	107694244	107694245	rs2043664	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	9q31.1	RP11-217B7.2	rs2043664-A	NR	1E-18		0.0271997	[0.021-0.033] unit decrease	Affymetrix [319769] (imputed)	N
1406	chr9	107694244	107694245	rs2043664	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	9q31.1	RP11-217B7.2	rs2043664-A	NR	8E-19		0.0273066	[0.021-0.033] unit decrease	Affymetrix [319769] (imputed)	N
1406	chr9	107694244	107694245	rs2043664	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	9q31.1	RP11-217B7.2	rs2043664-A	NR	6E-9		0.0180548	[0.012-0.024] unit decrease	Affymetrix [321114] (imputed)	N
1406	chr9	107694244	107694245	rs2043664	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	9q31.1	RP11-217B7.2	rs2043664-A	NR	8E-9		0.0184424	[0.012-0.025] unit increase	Affymetrix [321788] (imputed)	N
1406	chr9	107694244	107694245	rs2043664	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	9q31.1	RP11-217B7.2	rs2043664-A	NR	2E-9		0.0183693	[0.012-0.024] unit increase	Affymetrix [321016] (imputed)	N
1406	chr9	107694244	107694245	rs2043664	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	9q31.1	RP11-217B7.2	rs2043664-A	NR	8E-11		0.0202314	[0.014-0.026] unit decrease	Affymetrix [321169] (imputed)	N
1406	chr9	107694912	107694913	rs113610227	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	9q31.1	RP11-217B7.2	rs113610227-G	NR	2E-11		0.0322816	[0.023-0.042] unit increase	Affymetrix [319769] (imputed)	N
1406	chr9	107694912	107694913	rs113610227	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	9q31.1	RP11-217B7.2	rs113610227-G	NR	9E-12		0.032719	[0.023-0.042] unit increase	Affymetrix [319769] (imputed)	N
1406	chr9	107694912	107694913	rs113610227	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	9q31.1	RP11-217B7.2	rs113610227-G	NR	2E-8		0.0273489	[0.018-0.037] unit increase	Affymetrix [321169] (imputed)	N
1406	chr9	107695352	107695353	rs2472496	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Intraocular pressure	133,492 European ancestry individuals	NA	9q31.1	ABCA1	rs2472496-?	NR	4E-50		0.191	[0.17-0.22] unit decrease	Affymetrix, Illumina [up to 40000000] (imputed)	N
1406	chr9	107695352	107695353	rs2472496	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Glaucoma	11,018 European ancestry cases, 126,068 European ancestry controls	NA	9q31.1	ABCA1	rs2472496-?	NR	1E-29		1.1925573	[1.16-1.23]	Affymetrix [up to 40000000] (imputed)	N
1406	chr9	107695538	107695539	rs2472494	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antiglaucoma preparations and miotics)	5,911 East Asian ancestry cases, 172,815 East Asian ancestry controls	NA	9q31.1		rs2472494-C	0.419584947	3E-8		0.10621359	[0.069-0.144] unit decrease	Illumina [13429980] (imputed)	N
1406	chr9	107695538	107695539	rs2472494	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	9,179 European ancestry cases, 134,471 European ancestry controls, 1,983 East Asian ancestry cases, 13,719 East Asian ancestry controls, 127 Sub-Saharan African ancestry cases, 100 Sub-Saharan African ancestry controls	NA	9q31.1	ABCA1-SLC44A1	rs2472494-T	NR	2E-28		1.19268	[1.16-1.22]	Illumina [NR] (imputed)	N
1406	chr9	107695538	107695539	rs2472494	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls	NA	9q31.1	ABCA1	rs2472494-T	NR	1E-19		1.20334	[1.16-1.24]	Illumina [11610548] (imputed)	N
1406	chr9	107695538	107695539	rs2472494	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	23,963 European ancestry cases, 306,942 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	43,254 European ancestry cases, 1,471,118 European ancestry controls	9q31.1	ABCA1	rs2472494-T	NR	2E-69		0.126	unit increase	Illumina [15409056] (imputed)	N
1406	chr9	107695538	107695539	rs2472494	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	16,677 European ancestry cases, 199,580 European ancestry controls	7,286 European ancestry cases, 107,362 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	9q31.1	ABCA1	rs2472494-T	NR	2E-48		1.20852	[1.18-1.23]	Affymetrix, Illumina [14822926] (imputed)	N
1406	chr9	107695538	107695539	rs2472494	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (low intraocular pressure)	1,886 European ancestry cases, 15,151 European ancestry controls, 1,315 East Asian ancestry cases, 32,649 East Asian ancestry controls, 46 Sub-Saharan African ancestry cases, 197 Sub-Saharan African ancestry controls	NA	9q31.1	ABCA1-SLC44A1	rs2472494-T	NR	4E-13		1.22851	[1.17-1.28]	Illumina [NR] (imputed)	N
1406	chr9	107695538	107695539	rs2472494	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (high intraocular pressure)	3,376 European ancestry cases, 15,151 European ancestry controls, 1,516 East Asian ancestry cases, 32,649 East Asian ancestry controls, 252 Sub-Saharan African ancestry cases, 197 Sub-Saharan African ancestry controls	NA	9q31.1	ABCA1-SLC44A1	rs2472494-T	NR	7E-27		1.29576	[1.25-1.34]	Illumina [NR] (imputed)	N
1406	chr9	107695538	107695539	rs2472494	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Intraocular pressure	101,939 European ancestry cases	NA	9q31.1	NR	rs2472494-T		6E-43		0.2	[0.18-0.22] unit increase	NR [NR]	N
1406	chr9	107695538	107695539	rs2472494	30591961	Huang L	2018-12-24	Sci China Life Sci	Genome-wide analysis identified 17 new loci influencing intraocular pressure in Chinese population.	Intraocular pressure	5,571 Chinese ancestry individuals	2,981 Chinese ancestry individuals	9q31.1	ABCA1, SLC44A1	rs2472494-C	0.49	4E-11		6.6	NR z score increase	Illumina [at least 900015] (imputed)	N
1406	chr9	107695538	107695539	rs2472494	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	9q31.1	ABCA1, SLC44A1	rs2472494-T	0.4453	3E-49		0.2032	[0.18-0.23] unit increase	Affymetrix [~ 11900000] (imputed)	N
1406	chr9	107695538	107695539	rs2472494	29452408	Shiga Y	2018-02-14	Hum Mol Genet	Genome-wide association study identifies seven novel susceptibility loci for primary open-angle glaucoma.	Glaucoma (primary open-angle)	3,980 Japanese ancestry cases, 18,815 Japanese ancestry controls	4,406 East Asian ancestry cases, 18,161 East Asian ancestry controls, 5,008 European ancestry cases, 35,472 European ancestry controls, 769 African American cases, 663 African American controls, 1,572 Sub-Saharan African ancestry cases, 1,374 Sub-Saharan African ancestry controls.	9q31.1	ABCA1	rs2472494-T	0.58	2E-9	(Japanese discovery)	1.19	[1.12-1.25]	Illumina [6109376] (imputed)	N
1406	chr9	107695847	107695848	rs2472493	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antiglaucoma preparations and miotics)	5,215 European ancestry cases, 95,653 European ancestry controls, 5,911 East Asian ancestry cases, 172,815 East Asian ancestry controls	NA	9q31.1		rs2472493-A	NR	3E-22		0.1354	[0.11-0.16] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1406	chr9	107695847	107695848	rs2472493	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glaucoma	8,448 East Asian ancestry cases, 168,903 East Asian ancestry controls	NA	9q31.1		rs2472493-A	0.442890031	2E-13		0.12226151	[0.09-0.155] unit decrease	Illumina [13429686] (imputed)	N
1406	chr9	107695847	107695848	rs2472493	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glaucoma	10,411 European ancestry cases, 474,568 European ancestry controls, 8,448 East Asian ancestry cases, 168,903 East Asian ancestry controls	NA	9q31.1		rs2472493-A	NR	1E-39		0.1467	[0.12-0.17] unit decrease	Affymetrix, Illumina [25844939] (imputed)	N
1406	chr9	107695847	107695848	rs2472493	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	8,758 European ancestry cases, 108,815 European ancestry controls, 1,996 East Asian ancestry cases, 16,559  East Asian ancestry controls, 171 Sub-Saharan African ancestry cases, 94 Sub-Saharan African ancestry controls	NA	9q31.1	ABCA1-SLC44A1	rs2472493-A	NR	2E-29		0.839373	[0.81-0.87]	Illumina [NR] (imputed)	N
1406	chr9	107695847	107695848	rs2472493	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Glaucoma	5,761 Japanese ancestry cases, 206,692 Japanese ancestry controls	NA	9q31.1		rs2472493-A	0.441179034	1E-11		0.87484694	[0.841828651-0.909160268]	Illumina [8919992] (imputed)	N
1406	chr9	107695847	107695848	rs2472493	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Intraocular pressure	133,492 European ancestry individuals	NA	9q31.1	ABCA1	rs2472493-G	0.45	3E-51				Affymetrix, Illumina [8002429] (imputed)	N
1406	chr9	107695847	107695848	rs2472493	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Glaucoma (multi-trait analysis)	133,492 European ancestry individuals with intraocular pressure measurements, 90,939 European ancestry individuals with vertical cup-disc ratio measurements, 7,947 British ancestry glaucoma cases, 119,318 British ancestry controls	6,924 European ancestry glaucoma cases, 40,230 European ancestry controls	9q31.1	ABCA1	rs2472493-G	0.45	8E-59		1.19	NR	Affymetrix, Illumina [8002429] (imputed)	N
1406	chr9	107695847	107695848	rs2472493	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Glaucoma	7,947 British ancestry cases, 119,318 British ancestry controls	NA	9q31.1	ABCA1	rs2472493-G	0.45	2E-19		1.16	NR	Affymetrix [at least 8002429] (imputed)	N
1406	chr9	107695847	107695848	rs2472493	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Intraocular pressure	31,269 European ancestry individuals	NA	9q31.1	ABCA1	rs2472493-G	0.434	1E-8		0.152	[0.099-0.205] mmHg increase	Affymetrix, Illumina [12426120] (imputed)	N
1406	chr9	107695847	107695848	rs2472493	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (antiglaucoma preparations and miotics)	5,215 European ancestry cases, 95,653 European ancestry controls	NA	9q31.1	RP11-217B7.2	rs2472493-G	0.446503	8E-17		0.1704506	[0.13-0.21] unit increase	Affymetrix [7288503] (imputed)	N
1406	chr9	107695847	107695848	rs2472493	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Glaucoma	11,018 European ancestry cases, 126,068 European ancestry controls	NA	9q31.1	LOC105376196, ABCA1	rs2472493-A	NR	4E-30		1.1904762	[1.15-1.25]	Affymetrix [up to 40000000] (imputed)	N
1406	chr9	107695847	107695848	rs2472493	29891935	Choquet H	2018-06-11	Nat Commun	A multiethnic genome-wide association study of primary open-angle glaucoma identifies novel risk loci.	Glaucoma (primary open-angle)	6,687 European ancestry cases, 155,514 European ancestry controls, 204 South Asian ancestry cases, 4,916 South Asian ancestry controls, 272 African British cases, 4,831 African British controls, 22 East Asian ancestry cases, 873 East Asian ancestry controls, 144 mixed ancestry cases, 3,427 mixed ancestry controls	3,836 European ancestry cases, 48,065 European ancestry controls, 411 Hispanic cases, 4,778 Hispanic controls, 441 East Asian ancestry cases, 4,034 East Asian ancestry controls, 298 African American cases, 1,549 African American controls	9q31.1	ABCA1	rs2472493-G		6E-17		1.15	1.12-1.19	NR [NR] (imputed)	N
1406	chr9	107695847	107695848	rs2472493	29891935	Choquet H	2018-06-11	Nat Commun	A multiethnic genome-wide association study of primary open-angle glaucoma identifies novel risk loci.	Glaucoma (primary open-angle)	3,836 European ancestry cases, 48,065 European ancestry controls, 411 Hispanic cases, 4,778 Hispanic controls, 441 East Asian ancestry cases, 4,034 East Asian ancestry controls, 298 African American cases, 1,549 African American controls	6,687 European ancestry cases, 155,514 European ancestry controls, 204 South Asian ancestry cases, 4,916 South Asian ancestry controls, 272 African British cases, 4,831 African British controls, 22 East Asian ancestry cases, 873 East Asian ancestry controls, 144 mixed ancestry cases, 3,427 mixed ancestry controls	9q31.1	ABCA1	rs2472493-G		6E-17		1.15	[1.12-1.19]	Affymetrix [at least 665500] (imputed)	N
1406	chr9	107695847	107695848	rs2472493	29891935	Choquet H	2018-06-11	Nat Commun	A multiethnic genome-wide association study of primary open-angle glaucoma identifies novel risk loci.	Glaucoma (primary open-angle)	10,523 European ancestry cases, 203,579 European ancestry controls, 411 Hispanic cases, 4,778 Hispanic controls, 463 East Asian ancestry cases, 4,907 East Asian ancestry controls, 298 African American cases, 1,549 African American controls, 204 South Asian ancestry cases, 4,916 South Asian ancestry controls, 272 African British cases, 4,831 African British controls, 144 mixed ancestry cases, 3,427 mixed ancestry controls	NA	9q31.1	ABCA1	rs2472493-G	NR	6E-29		1.16	1.13-1.19	Affymetrix [at least 665500] (imputed)	N
1406	chr9	107695847	107695848	rs2472493	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	9q31.1	ABCA1	rs2472493-G	0.447	6E-59		0.207	[0.18-0.23] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1406	chr9	107695847	107695848	rs2472493	29235454	Choquet H	2017-12-13	Nat Commun	A large multi-ethnic genome-wide association study identifies novel genetic loci for intraocular pressure.	Intraocular pressure	56,819 European ancestry individuals, 5,748 Hispanic/Latino individuals, 5,119 East Asian ancestry individuals, 2,070 African American individuals	37,930 European and Asian ancestry individuals	9q31.1	AK311445, ABCA1	rs2472493-?	NR	2E-40		0.17	[NR] unit increase	Affymetrix [at least 665000] (imputed)	N
1406	chr9	107695847	107695848	rs2472493	25173106	Hysi PG	2014-08-31	Nat Genet	Genome-wide analysis of multi-ancestry cohorts identifies new loci influencing intraocular pressure and susceptibility to glaucoma.	Intraocular pressure	7,738 Asian ancestry individuals, 27,558 European ancestry individuals	NA	9q31.1	ABCA1	rs2472493-G	NR	3E-11		0.159	[0.11-0.21] mm Hg increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1406	chr9	107695847	107695848	rs2472493	25173105	Gharahkhani P	2014-08-31	Nat Genet	Common variants near ABCA1, AFAP1 and GMDS confer risk of primary open-angle glaucoma.	Glaucoma (primary open-angle)	1,155 European ancestry cases, 1,922 European ancestry controls	3,548 European ancestry cases, 9,496 European ancestry controls	9q31.1	ABCA1	rs2472493-G	0.44	2E-19		1.31	[NR]	Illumina [7594768] (imputed)	N
1406	chr9	107698087	107698088	rs2472491	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	9q31.1	RP11-217B7.2	rs2472491-G	NR	2E-11		0.0200524	[0.014-0.026] unit decrease	Affymetrix [319769] (imputed)	N
1406	chr9	107698087	107698088	rs2472491	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	9q31.1	RP11-217B7.2	rs2472491-G	NR	2E-11		0.020076	[0.014-0.026] unit decrease	Affymetrix [319769] (imputed)	N
1406	chr9	107698605	107698606	rs118110117	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	9q31.1	NR	rs118110117-G	NR	3E-11		0.059	[0.042-0.076] unit increase	Affymetrix [9000000] (imputed)	N
1406	chr9	107698605	107698606	rs118110117	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	9q31.1	NR	rs118110117-G	NR	3E-12		0.0622	[0.045-0.08] unit increase	Affymetrix [9000000] (imputed)	N
1406	chr9	107698611	107698612	rs3887137	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	9q31.1	RP11-217B7.2	rs3887137-T	NR	2E-8		0.0253617	[0.017-0.034] unit increase	Affymetrix [321114] (imputed)	N
1406	chr9	107698611	107698612	rs3887137	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	9q31.1	RP11-217B7.2	rs3887137-T	NR	6E-9		0.0263169	[0.017-0.035] unit increase	Affymetrix [321169] (imputed)	N
1406	chr9	107698782	107698783	rs4098517	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	9q31.1	RP11-217B7.2	rs4098517-A	NR	3E-11		0.019856	[0.014-0.026] unit increase	Affymetrix [319769] (imputed)	N
1406	chr9	107699195	107699196	rs2437819	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	9q31.1	ABCA1, SLC44A1	rs2437819-G	0.3044	7E-19		0.1344	[0.1-0.16] unit increase	Affymetrix [~ 11900000] (imputed)	N
1406	chr9	107699367	107699368	rs4743765	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	9q31.1	RP11-217B7.2	rs4743765-A	NR	1E-12		0.0317563	[0.023-0.041] unit increase	Affymetrix [319769] (imputed)	N
1406	chr9	107701233	107701234	rs2472481	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	9q31.1	RP11-217B7.2	rs2472481-C	NR	3E-8		0.0196631	[0.013-0.027] unit decrease	Affymetrix [319769] (imputed)	N
1406	chr9	107701233	107701234	rs2472481	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	9q31.1	RP11-217B7.2	rs2472481-C	NR	1E-8		0.0201983	[0.013-0.027] unit decrease	Affymetrix [319769] (imputed)	N
1406	chr9	107701233	107701234	rs2472481	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	9q31.1	RP11-217B7.2	rs2472481-C	NR	1E-9		0.0217245	[0.015-0.029] unit decrease	Affymetrix [321169] (imputed)	N
1406	chr9	107703336	107703337	rs12006440	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	9q31.1	RP11-217B7.2	rs12006440-T	NR	1E-8		0.0455144	[0.03-0.061] unit decrease	Affymetrix [319769] (imputed)	N
1406	chr9	107703336	107703337	rs12006440	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	9q31.1	RP11-217B7.2	rs12006440-T	NR	6E-9		0.0461199	[0.031-0.062] unit decrease	Affymetrix [319769] (imputed)	N
1406	chr9	107703336	107703337	rs12006440	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	9q31.1	RP11-217B7.2	rs12006440-T	NR	1E-8		0.04589	[0.03-0.062] unit decrease	Affymetrix [321169] (imputed)	N
1406	chr9	107703336	107703337	rs12006440	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	9q31.1	NR	rs12006440-?	NR	8E-13				Affymetrix [~ 8270000] (imputed)	N
1406	chr9	107703933	107703934	rs2487032	25173107	Chen Y	2014-08-31	Nat Genet	Common variants near ABCA1 and in PMM2 are associated with primary open-angle glaucoma.	Glaucoma (high intraocular pressure)	966 Han Chinese ancestry cases, 1,005 Han Chinese ancestry controls	1,140 Han Chinese ancestry cases, 2,237 Han Chinese ancestry controls	9q31.1	ABCA1	rs2487032-?	0.52	7E-14		1.35	[1.25-1.47]	Illumina [870261]	N
1406	chr9	107704335	107704335	rs35054618	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	9q31.1	RP11-217B7.2	rs35054618-GT	NR	3E-11		0.0218736	[0.015-0.028] unit increase	Affymetrix [319769] (imputed)	N
1406	chr9	107704335	107704335	rs35054618	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	9q31.1	RP11-217B7.2	rs35054618-GT	NR	3E-10		0.0209317	[0.014-0.027] unit increase	Affymetrix [321114] (imputed)	N
1406	chr9	107704335	107704335	rs35054618	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	9q31.1	RP11-217B7.2	rs35054618-GT	NR	2E-11		0.0221458	[0.016-0.029] unit increase	Affymetrix [321169] (imputed)	N
1406	chr9	107706912	107706913	rs4743768	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	9q31.1	RP11-217B7.2	rs4743768-A	NR	1E-13		0.024902	[0.018-0.031] unit increase	Affymetrix [319769] (imputed)	N
1406	chr9	107706912	107706913	rs4743768	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	9q31.1	RP11-217B7.2	rs4743768-A	NR	2E-14		0.0257025	[0.019-0.032] unit increase	Affymetrix [319769] (imputed)	N
1406	chr9	107706912	107706913	rs4743768	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	9q31.1	RP11-217B7.2	rs4743768-A	NR	6E-9		0.0197704	[0.013-0.026] unit increase	Affymetrix [321169] (imputed)	N
1406	chr9	107712706	107712707	rs2472447	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	9q31.1	RP11-217B7.2	rs2472447-G	NR	1E-8		0.0162376	[0.011-0.022] unit decrease	Affymetrix [319769] (imputed)	N
1406	chr9	107712706	107712707	rs2472447	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	9q31.1	RP11-217B7.2	rs2472447-G	NR	6E-9		0.0165569	[0.011-0.022] unit decrease	Affymetrix [319769] (imputed)	N
1406	chr9	107712927	107712927	rs747756466	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	9q31.1	RP11-217B7.2	rs747756466-T	NR	8E-18		0.0335575	[0.026-0.041] unit increase	Affymetrix [319769] (imputed)	N
1406	chr9	107712927	107712927	rs747756466	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	9q31.1	RP11-217B7.2	rs747756466-T	NR	3E-18		0.0340046	[0.026-0.042] unit increase	Affymetrix [319769] (imputed)	N
1406	chr9	107712927	107712927	rs747756466	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	9q31.1	RP11-217B7.2	rs747756466-T	NR	5E-13		0.0284614	[0.021-0.036] unit increase	Affymetrix [321114] (imputed)	N
1406	chr9	107712927	107712927	rs747756466	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	9q31.1	RP11-217B7.2	rs747756466-T	NR	3E-13		0.0287913	[0.021-0.037] unit increase	Affymetrix [321169] (imputed)	N
1406	chr9	107713859	107713860	rs1811408	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	9q31.1	RP11-217B7.2	rs1811408-G	NR	5E-28		0.0326476	[0.027-0.038] unit increase	Affymetrix [319769] (imputed)	N
1406	chr9	107713859	107713860	rs1811408	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	9q31.1	RP11-217B7.2	rs1811408-G	NR	4E-29		0.0333512	[0.028-0.039] unit increase	Affymetrix [319769] (imputed)	N
1406	chr9	107713859	107713860	rs1811408	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	9q31.1	RP11-217B7.2	rs1811408-G	NR	3E-17		0.0252883	[0.019-0.031] unit increase	Affymetrix [321114] (imputed)	N
1406	chr9	107713859	107713860	rs1811408	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	9q31.1	RP11-217B7.2	rs1811408-G	NR	3E-9		0.018279	[0.012-0.024] unit decrease	Affymetrix [321788] (imputed)	N
1406	chr9	107713859	107713860	rs1811408	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	9q31.1	RP11-217B7.2	rs1811408-G	NR	1E-18		0.0264826	[0.021-0.032] unit increase	Affymetrix [321169] (imputed)	N
1406	chr9	107715127	107715128	rs79949216	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	9q31.1		rs79949216-C	0.889774	2E-9		0.0345904	[0.023-0.046] unit increase	NR [11722792] (imputed)	N
1406	chr9	107715127	107715128	rs79949216	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	9q31.1		rs79949216-C	0.889775	4E-8		0.0319815	[0.021-0.043] unit decrease	NR [11722792] (imputed)	N
1406	chr9	107715127	107715128	rs79949216	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	9q31.1		rs79949216-C	0.889774	1E-8		0.0329604	[0.022-0.044] unit increase	NR [11722792] (imputed)	N
1406	chr9	107715127	107715128	rs79949216	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	9q31.1		rs79949216-C	0.889774	8E-10		0.0357054	[0.024-0.047] unit increase	NR [11722792] (imputed)	N
1406	chr9	107715127	107715128	rs79949216	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	9q31.1		rs79949216-C	0.889774	1E-9		0.0351554	[0.024-0.046] unit increase	NR [11722792] (imputed)	N
1406	chr9	107715127	107715128	rs79949216	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	9q31.1		rs79949216-C	0.889774	7E-9		0.0336928	[0.022-0.045] unit increase	NR [11722792] (imputed)	N
1406	chr9	107715222	107715223	rs79279753	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	9q31.1	NR	rs79279753-?	NR	4E-9				Affymetrix [~ 8270000] (imputed)	N
1406	chr9	107720119	107720120	rs2487028	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	9q31.1	RP11-217B7.2	rs2487028-C	NR	7E-13		0.0253257	[0.018-0.032] unit decrease	Affymetrix [321114] (imputed)	N
1406	chr9	107722281	107722282	rs4743771	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	9q31.1	RP11-217B7.3	rs4743771-A	NR	2E-13		0.0229759	[0.017-0.029] unit decrease	Affymetrix [321114] (imputed)	N
1406	chr9	107722281	107722282	rs4743771	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	9q31.1	NR	rs4743771-?	NR	1E-12				Affymetrix [~ 8270000] (imputed)	N
1406	chr9	107722577	107722578	rs4397467	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	9q31.1	NR	rs4397467-?	NR	9E-16				Affymetrix [~ 8270000] (imputed)	N
1406	chr9	107722704	107722705	rs1962883	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	9q31.1	NR	rs1962883-C	0.52982	7E-10		0.00804594	[0.0056-0.0105] unit increase	Affymetrix [16585854] (imputed)	N
1406	chr9	107724706	107724707	rs111936426	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	9q31.1	NR	rs111936426-?	NR	1E-13				Affymetrix [~ 8270000] (imputed)	N
1406	chr9	107726069	107726070	rs10991432	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	9q31.1	RP11-217B7.3	rs10991432-A	NR	1E-8		0.022963	[0.015-0.031] unit increase	Affymetrix [321169] (imputed)	N
1406	chr9	107726917	107726918	rs10991433	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	9q31.1	NR	rs10991433-?	NR	2E-11				Affymetrix [~ 8270000] (imputed)	N
1406	chr9	107726917	107726918	rs10991433	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	9q31.1	NA	rs10991433-T	0.8956	6E-20		0.0254	[0.02-0.031] unit decrease	NR [~ 27400000] (imputed)	N
1406	chr9	107726917	107726918	rs10991433	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex x age interaction (4df test)	up to 43,776 European ancestry men aged <50, up to 50,526 European ancestry women aged <50, up to 69,944 European ancestry men aged >50, up to 88,129 European ancestry women aged >50	NA	9q31.1	NR	rs10991433-T	0.887123614680935	3E-10				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1406	chr9	107726917	107726918	rs10991433	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	9q31.1	NR	rs10991433-T	0.887123614680935	7E-12		0.036508307	units decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1406	chr9	107727726	107727727	rs4743776	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	9q31.1	NR	rs4743776-G	0.298796	1E-10		0.00612504	[0.0043-0.0079] unit increase	Affymetrix [16582909] (imputed)	N
1406	chr9	107727726	107727727	rs4743776	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	9q31.1	NR	rs4743776-G	0.298796	2E-6		0.00488398	[0.0029-0.0069] unit increase	Affymetrix [16582965] (imputed)	N
1406	chr9	107729079	107729080	rs75643536	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	9q31.1	NR	rs75643536-?	NR	8E-9				Affymetrix [~ 8270000] (imputed)	N
1406	chr9	107731193	107731194	rs2900388	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	9q31.1	RP11-217B7.3	rs2900388-C	NR	1E-25		0.0323631	[0.026-0.038] unit decrease	Affymetrix [319769] (imputed)	N
1406	chr9	107731193	107731194	rs2900388	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	9q31.1	RP11-217B7.3	rs2900388-C	NR	3E-26		0.0327101	[0.027-0.039] unit decrease	Affymetrix [319769] (imputed)	N
1406	chr9	107731193	107731194	rs2900388	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	9q31.1	RP11-217B7.3	rs2900388-C	NR	2E-10		0.0202953	[0.014-0.027] unit increase	Affymetrix [321788] (imputed)	N
1406	chr9	107731788	107731789	rs7023634	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	9q31.1	RP11-217B7.3	rs7023634-G	NR	4E-10		0.0193137	[0.013-0.025] unit increase	Affymetrix [321016] (imputed)	N
1406	chr9	107732643	107732643	rs147070987	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	9q31.1	RP11-217B7.3	rs147070987-TC	NR	4E-16		0.0440668	[0.033-0.055] unit increase	Affymetrix [319769] (imputed)	N
1406	chr9	107732643	107732643	rs147070987	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	9q31.1	RP11-217B7.3	rs147070987-TC	NR	4E-16		0.0441147	[0.034-0.055] unit increase	Affymetrix [319769] (imputed)	N
1406	chr9	107732643	107732643	rs147070987	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	9q31.1	RP11-217B7.3	rs147070987-TC	NR	2E-11		0.0365067	[0.026-0.047] unit increase	Affymetrix [321114] (imputed)	N
1406	chr9	107732643	107732643	rs147070987	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	9q31.1	RP11-217B7.3	rs147070987-TC	NR	2E-11		0.0368875	[0.026-0.048] unit increase	Affymetrix [321169] (imputed)	N
1406	chr9	107732706	107732706	rs35798347	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	9q31.1	RP11-217B7.3	rs35798347-G	NR	7E-15		0.0230569	[0.017-0.029] unit decrease	Affymetrix [321114] (imputed)	N
1406	chr9	107732706	107732706	rs35798347	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	9q31.1	RP11-217B7.3	rs35798347-G	NR	3E-16		0.0242983	[0.018-0.03] unit decrease	Affymetrix [321169] (imputed)	N
1406	chr9	107733546	107733547	rs2417589	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	9q31.1	NR	rs2417589-?	NR	8E-15				Affymetrix [~ 8270000] (imputed)	N
1406	chr9	107734713	107734714	rs4556142	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	9q31.1	NR	rs4556142-?	NR	6E-27				Affymetrix [~ 8270000] (imputed)	N
1406	chr9	107734713	107734714	rs4556142	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	9q31.1	NR	rs4556142-?	NR	5E-14				Affymetrix [~ 8270000] (imputed)	N
1406	chr9	107734713	107734714	rs4556142	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	9q31.1	NR	rs4556142-A	0.3741	3E-14		0.014	[0.01-0.018] unit decrease	NR [~ 27400000] (imputed)	N
1406	chr9	107735919	107735920	rs10991437	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	9q31.1	ABCA1	rs10991437-A	0.1167	8E-8		0.0294	[0.019-0.04] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1406	chr9	107735919	107735920	rs10991437	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	9q31.1	ABCA1	rs10991437-A	0.1167	3E-6	(women)	0.0341	[0.02-0.048] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1406	chr9	107735919	107735920	rs10991437	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	9q31.1	ABCA1	rs10991437-A	0.1149	1E-8	(women)	0.0402	[0.026-0.054] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1406	chr9	107735919	107735920	rs10991437	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	9q31.1	ABCA1	rs10991437-A	0.1147	9E-9		0.0305	[0.02-0.041] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1406	chr9	107735919	107735920	rs10991437	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	9q31.1	ABCA1	rs10991437-A	0.1142	3E-8	(EA, women)	0.0399	[0.026-0.054] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1406	chr9	107735919	107735920	rs10991437	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	9q31.1	ABCA1	rs10991437-A	0.1135	1E-8	(EA)	0.0311	[0.021-0.042] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1406	chr9	107736317	107736318	rs735169	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	9q31.1	RP11-217B7.3	rs735169-C	NR	4E-13		0.0206709	[0.015-0.026] unit decrease	Affymetrix [319769] (imputed)	N
1406	chr9	107736317	107736318	rs735169	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	9q31.1	RP11-217B7.3	rs735169-C	NR	3E-13		0.0208103	[0.015-0.026] unit decrease	Affymetrix [319769] (imputed)	N
1406	chr9	107736382	107736382	rs750930705	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	9q31.1		rs750930705-TC	0.435868	1E-9		0.0249821	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
1406	chr9	107736382	107736382	rs750930705	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	9q31.1		rs750930705-TC	0.435868	3E-8		0.0224757	[0.015-0.03] unit increase	NR [11722792] (imputed)	N
1406	chr9	107736705	107736706	rs5020792	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	9q31.1	RP11-217B7.3	rs5020792-A	NR	3E-16		0.0292655	[0.022-0.036] unit increase	Affymetrix [319769] (imputed)	N
1406	chr9	107736705	107736706	rs5020792	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	9q31.1	RP11-217B7.3	rs5020792-A	NR	1E-16		0.0295833	[0.023-0.037] unit increase	Affymetrix [319769] (imputed)	N
1406	chr9	107736705	107736706	rs5020792	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	9q31.1	RP11-217B7.3	rs5020792-A	NR	7E-15		0.0280877	[0.021-0.035] unit increase	Affymetrix [321114] (imputed)	N
1406	chr9	107736705	107736706	rs5020792	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	9q31.1	RP11-217B7.3	rs5020792-A	NR	1E-15		0.0289944	[0.022-0.036] unit increase	Affymetrix [321169] (imputed)	N
1406	chr9	107736705	107736706	rs5020792	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	9q31.1	NR	rs5020792-?	NR	4E-12				Affymetrix [~ 8270000] (imputed)	N
1406	chr9	107737242	107737243	rs118057579	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	9q31.1	RP11-217B7.3	rs118057579-A	NR	3E-8		0.0367419	[0.024-0.05] unit increase	Affymetrix [319769] (imputed)	N
1406	chr9	107737242	107737243	rs118057579	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	9q31.1	RP11-217B7.3	rs118057579-A	NR	2E-8		0.0375698	[0.025-0.051] unit increase	Affymetrix [319769] (imputed)	N
1406	chr9	107740826	107740827	rs113752012	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	9q31.1	Intergenic	rs113752012-A	0.999	3E-6	(AA)	0.448	unit increase	Illumina [NR] (imputed)	N
1407	chr9	107743465	107743466	rs62569480	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	9q31.1	RP11-217B7.3	rs62569480-G	NR	1E-19		0.0361518	[0.028-0.044] unit increase	Affymetrix [319769] (imputed)	N
1407	chr9	107743465	107743466	rs62569480	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	9q31.1	RP11-217B7.3	rs62569480-G	NR	4E-20		0.0367601	[0.029-0.045] unit increase	Affymetrix [319769] (imputed)	N
1407	chr9	107743465	107743466	rs62569480	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	9q31.1	RP11-217B7.3	rs62569480-G	NR	5E-11		0.0264595	[0.019-0.034] unit increase	Affymetrix [321114] (imputed)	N
1407	chr9	107743465	107743466	rs62569480	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	9q31.1	RP11-217B7.3	rs62569480-G	NR	1E-12		0.0286556	[0.021-0.037] unit increase	Affymetrix [321169] (imputed)	N
1407	chr9	107743465	107743466	rs62569480	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	9q31.1	NR	rs62569480-?	NR	2E-26				Affymetrix [~ 8270000] (imputed)	N
1407	chr9	107744957	107744958	rs12342875	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	9q31.1	RP11-217B7.3	rs12342875-C	NR	2E-12		0.0270344	[0.02-0.035] unit increase	Affymetrix [319769] (imputed)	N
1407	chr9	107744957	107744958	rs12342875	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	9q31.1	RP11-217B7.3	rs12342875-C	NR	8E-13		0.0274197	[0.02-0.035] unit increase	Affymetrix [319769] (imputed)	N
1407	chr9	107744957	107744958	rs12342875	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	9q31.1	RP11-217B7.3	rs12342875-C	NR	3E-8		0.0212815	[0.014-0.029] unit increase	Affymetrix [321114] (imputed)	N
1407	chr9	107744957	107744958	rs12342875	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	9q31.1	RP11-217B7.3	rs12342875-C	NR	4E-9		0.0227744	[0.015-0.03] unit increase	Affymetrix [321169] (imputed)	N
1407	chr9	107750559	107750560	rs12337928	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	9q31.1	NR	rs12337928-?	NR	1E-14				Affymetrix [~ 8270000] (imputed)	N
1407	chr9	107750755	107750756	rs10820753	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	9q31.1	RP11-217B7.3	rs10820753-T	NR	5E-13		0.0226573	[0.017-0.029] unit increase	Affymetrix [319769] (imputed)	N
1407	chr9	107751570	107751571	rs10991446	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	9q31.1	RP11-217B7.3	rs10991446-C	NR	3E-12		0.0219165	[0.016-0.028] unit increase	Affymetrix [319769] (imputed)	N
1407	chr9	107751570	107751571	rs10991446	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	9q31.1	RP11-217B7.3	rs10991446-C	NR	4E-10		0.0198048	[0.014-0.026] unit increase	Affymetrix [321114] (imputed)	N
1407	chr9	107751570	107751571	rs10991446	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	9q31.1	RP11-217B7.3	rs10991446-C	NR	1E-10		0.0203808	[0.014-0.027] unit increase	Affymetrix [321169] (imputed)	N
1407	chr9	107752357	107752358	rs7035589	26545240	Giri A	2015-11-06	PLoS One	Genetic Determinants of Pelvic Organ Prolapse among African American and Hispanic Women in the Women's Health Initiative.	Pelvic organ prolapse	793 African American cases, 948 African American controls, 606 Hispanic cases, 305 Hispanic controls	NA	9q31.1	XR_242662.1, ABCA1, LOC101928579	rs7035589-T	0.39	3E-7	(AA)	1.44	[1.26-1.65]	Affymetrix [at least 730985] (imputed)	N
1407	chr9	107754550	107754551	rs7848679	26503814	Hardin M	2016-10-27	Pharmacogenomics J	A genome-wide analysis of the response to inhaled ?2-agonists in chronic obstructive pulmonary disease.	Response to bronchodilator in chronic obstructive pulmonary disease (change in FEV1)	5,766 European ancestry cases, 811 African American cases	NA	9q31.1	ABCA1	rs7848679-G	0.93	9E-7	(BDRBASE, AA)	6.96	[4.2-9.72] unit increase	Illumina [NR] (imputed)	N
1407	chr9	107757002	107757003	rs13289122	26545240	Giri A	2015-11-06	PLoS One	Genetic Determinants of Pelvic Organ Prolapse among African American and Hispanic Women in the Women's Health Initiative.	Pelvic organ prolapse	793 African American cases, 948 African American controls, 606 Hispanic cases, 305 Hispanic controls	NA	9q31.1	XR_242662.1, ABCA1	rs13289122-T	0.47	5E-6		1.3		Affymetrix [at least 730985] (imputed)	N
1407	chr9	107761370	107761371	rs139113145	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	9q31.1		rs139113145-T	0.20547	8E-9		0.016030814	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1407	chr9	107761370	107761371	rs139113145	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	9q31.1		rs139113145-T	0.205533	6E-10		0.017268473	[0.012-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1407	chr9	107761370	107761371	rs139113145	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	9q31.1		rs139113145-T	0.205497	2E-10		0.017792122	[0.012-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1407	chr9	107762099	107762100	rs10991455	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q31.1	NR	rs10991455-C	0.888944	4E-11				Affymetrix, Illumina [24653286] (imputed)	N
1407	chr9	107762099	107762100	rs10991455	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q31.1	NR	rs10991455-C	0.888959	7E-11				Affymetrix, Illumina [24558453] (imputed)	N
1407	chr9	107771015	107771016	rs4742936	26503814	Hardin M	2016-10-27	Pharmacogenomics J	A genome-wide analysis of the response to inhaled ?2-agonists in chronic obstructive pulmonary disease.	Response to bronchodilator in chronic obstructive pulmonary disease (change in FEV1)	5,766 European ancestry cases, 811 African American cases	NA	9q31.1	ABCA1	rs4742936-C	0.94	7E-7	(BDRPRED, AA)	3.28	[1.99-4.57] unit increase	Illumina [NR] (imputed)	N
1407	chr9	107771015	107771016	rs4742936	26503814	Hardin M	2016-10-27	Pharmacogenomics J	A genome-wide analysis of the response to inhaled ?2-agonists in chronic obstructive pulmonary disease.	Response to bronchodilator in chronic obstructive pulmonary disease (change in FEV1)	5,766 European ancestry cases, 811 African American cases	NA	9q31.1	ABCA1	rs4742936-C	0.94	1E-6	(BDRABS, AA)	0.088	[0.053-0.123] unit increase	Illumina [NR] (imputed)	N
1407	chr9	107774002	107774003	rs10991460	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	9q31.1	ABCA1	rs10991460-G	0.653967	1E-10		0.00145756	[0.00099-0.00193] unit decrease	Affymetrix [13995440] (imputed)	N
1407	chr9	107782746	107782747	rs138535374	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	9q31.1	NR	rs138535374-G	0.11072	4E-11		0.019492	[0.014-0.025] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
1407	chr9	107786885	107786886	rs10991473	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	9q31.1		rs10991473-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1407	chr9	107787213	107787214	rs328876	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	9q31.1	RP11-217B7.3	rs328876-T	NR	2E-8		0.0161243	[0.011-0.022] unit increase	Affymetrix [321114] (imputed)	N
1407	chr9	107787213	107787214	rs328876	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	9q31.1	RP11-217B7.3	rs328876-T	NR	2E-9		0.0171539	[0.012-0.023] unit increase	Affymetrix [321169] (imputed)	N
1407	chr9	107791701	107791702	rs498275	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	9q31.1	NR	rs498275-A	0.337586	2E-11		0.013138	[0.0093-0.017] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
1407	chr9	107813672	107813673	rs35440884	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in ever smokers	23,223 European ancestry cases,  16,964 European ancestry controls	NA	9q31.1	ABCA1, SLC44A1	rs35440884-G	0.8522893460000001	7E-7		1.1096019	[1.06-1.16]	Illumina [10439017] (imputed)	N
1407	chr9	107819928	107819929	rs75932292	29535370	Kleinstein SE	2018-02-28	Genes Immun	Genome-wide association study (GWAS) of human host factors influencing viral severity of herpes simplex virus type 2 (HSV-2).	Virologic severity in Herpes simplex virus type 2 infection	223 European ancestry individuals	NA	9q31.1	intergenic	rs75932292-?	NR	7E-8				Illumina [1539908]	N
1407	chr9	107820816	107820817	rs73664402	29535370	Kleinstein SE	2018-02-28	Genes Immun	Genome-wide association study (GWAS) of human host factors influencing viral severity of herpes simplex virus type 2 (HSV-2).	Virologic severity in Herpes simplex virus type 2 infection	223 European ancestry individuals	NA	9q31.1	intergenic	rs73664402-?	NR	1E-7				Illumina [1539908]	N
1407	chr9	107822447	107822448	rs118188190	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	9q31.1	RN7SKP191	rs118188190-G	NR	1E-8		0.0372829	[0.024-0.05] unit increase	Affymetrix [319769] (imputed)	N
1407	chr9	107822447	107822448	rs118188190	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	9q31.1	RN7SKP191	rs118188190-G	NR	6E-9		0.0379824	[0.025-0.051] unit increase	Affymetrix [319769] (imputed)	N
1407	chr9	107822465	107822466	rs12350344	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	9q31.1	RN7SKP191	rs12350344-T	NR	7E-10		0.026628	[0.018-0.035] unit increase	Affymetrix [319769] (imputed)	N
1407	chr9	107822465	107822466	rs12350344	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	9q31.1	RN7SKP191	rs12350344-T	NR	4E-10		0.0270091	[0.019-0.035] unit increase	Affymetrix [319769] (imputed)	N
1407	chr9	107826752	107826753	rs2937371	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	9q31.1	NR	rs2937371-?	NR	1E-11				Affymetrix [~ 8270000] (imputed)	N
1407	chr9	107849203	107849204	rs181677504	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	9q31.1	RN7SKP191	rs181677504-T	NR	3E-19		0.0575781	[0.045-0.07] unit decrease	Affymetrix [319769] (imputed)	N
1407	chr9	107849203	107849204	rs181677504	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	9q31.1	RN7SKP191	rs181677504-T	NR	4E-20		0.0591159	[0.047-0.072] unit decrease	Affymetrix [319769] (imputed)	N
1407	chr9	107849203	107849204	rs181677504	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	9q31.1	RN7SKP191	rs181677504-T	NR	8E-16		0.0522493	[0.04-0.065] unit decrease	Affymetrix [321114] (imputed)	N
1407	chr9	107849203	107849204	rs181677504	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	9q31.1	RN7SKP191	rs181677504-T	NR	2E-16		0.0535186	[0.041-0.066] unit decrease	Affymetrix [321169] (imputed)	N
1407	chr9	107857328	107857329	rs117109866	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	9q31.1	RN7SKP191	rs117109866-A	NR	2E-23		0.0931116	[0.075-0.111] unit decrease	Affymetrix [319769] (imputed)	N
1407	chr9	107857328	107857329	rs117109866	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	9q31.1	RN7SKP191	rs117109866-A	NR	4E-24		0.0944838	[0.076-0.113] unit decrease	Affymetrix [319769] (imputed)	N
1407	chr9	107857328	107857329	rs117109866	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	9q31.1	RN7SKP191	rs117109866-A	NR	3E-15		0.0740834	[0.056-0.093] unit decrease	Affymetrix [321114] (imputed)	N
1407	chr9	107857328	107857329	rs117109866	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	9q31.1	RN7SKP191	rs117109866-A	NR	2E-17		0.0801024	[0.062-0.099] unit decrease	Affymetrix [321169] (imputed)	N
1407	chr9	107869223	107869224	rs2047701	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	9q31.1	RN7SKP191	rs2047701-A	NR	1E-10		0.0237109	[0.017-0.031] unit decrease	Affymetrix [319769] (imputed)	N
1407	chr9	107869223	107869224	rs2047701	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	9q31.1	RN7SKP191	rs2047701-A	NR	2E-11		0.0246615	[0.017-0.032] unit decrease	Affymetrix [319769] (imputed)	N
1407	chr9	107869223	107869224	rs2047701	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	9q31.1	RN7SKP191	rs2047701-A	NR	4E-8		0.0202787	[0.013-0.028] unit decrease	Affymetrix [321114] (imputed)	N
1407	chr9	107869833	107869834	rs4743805	25897833	Thompson AG	2015-04-21	Transl Psychiatry	Genome-wide association study of behavioural and psychiatric features in human prion disease.	Behavioral disturbance or psychiatric symptoms in prion disease	Up to 170 cases	NA	9q31.1	SLC44A1	rs4743805-?	0.165	6E-6		4.51	[2.24-9.08]	Illumina [518938]	N
1408	chr9	107873196	107873197	rs3124017	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	9q31.1	RN7SKP191	rs3124017-T	NR	9E-11		0.0206941	[0.014-0.027] unit decrease	Affymetrix [319769] (imputed)	N
1408	chr9	107873196	107873197	rs3124017	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	9q31.1	RN7SKP191	rs3124017-T	NR	1E-11		0.021654	[0.015-0.028] unit decrease	Affymetrix [319769] (imputed)	N
1408	chr9	107873196	107873197	rs3124017	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	9q31.1	RN7SKP191	rs3124017-T	NR	7E-11		0.0210125	[0.015-0.027] unit decrease	Affymetrix [321114] (imputed)	N
1408	chr9	107873196	107873197	rs3124017	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	9q31.1	RN7SKP191	rs3124017-T	NR	2E-12		0.0226266	[0.016-0.029] unit decrease	Affymetrix [321169] (imputed)	N
1408	chr9	107873196	107873197	rs3124017	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	9q31.1	NR	rs3124017-?	NR	5E-12				Affymetrix [~ 8270000] (imputed)	N
1408	chr9	107873196	107873197	rs3124017	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	9q31.1	NR	rs3124017-?	NR	1E-10				Affymetrix [~ 8270000] (imputed)	N
1408	chr9	107883620	107883621	rs547262977	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	9q31.1	RN7SKP191	rs547262977-T	NR	2E-28		0.0829664	[0.068-0.098] unit decrease	Affymetrix [319769] (imputed)	N
1408	chr9	107883620	107883621	rs547262977	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	9q31.1	RN7SKP191	rs547262977-T	NR	9E-30		0.0848735	[0.07-0.1] unit decrease	Affymetrix [319769] (imputed)	N
1408	chr9	107883620	107883621	rs547262977	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	9q31.1	RN7SKP191	rs547262977-T	NR	4E-23		0.0748151	[0.06-0.09] unit decrease	Affymetrix [321169] (imputed)	N
1408	chr9	107885972	107885973	rs111885446	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	9q31.1	NR	rs111885446-?	NR	2E-26				Affymetrix [~ 8270000] (imputed)	N
1408	chr9	107886873	107886874	rs4381000	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	9q31.1	RN7SKP191	rs4381000-G	NR	5E-20		0.0681124	[0.054-0.083] unit decrease	Affymetrix [321114] (imputed)	N
1408	chr9	107887449	107887450	rs72607124	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	9q31.1	NR	rs72607124-?	NR	3E-34				Affymetrix [~ 8270000] (imputed)	N
1408	chr9	107887449	107887450	rs72607124	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	9q31.1		rs72607124-?	NR	2E-33				NR [~ 8900000] (imputed)	N
1408	chr9	107887737	107887738	rs9792666	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	9q31.1	NR	rs9792666-A	0.96	1E-31		0.057	[0.048-0.066] unit increase	Affymetrix [2446094] (imputed)	N
1408	chr9	107887737	107887738	rs9792666	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	9q31.1	NR	rs9792666-A	0.96	5E-8				Affymetrix [2446094] (imputed)	N
1408	chr9	107900440	107900441	rs58603922	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	9q31.1	RN7SKP191	rs58603922-A	NR	2E-11		0.0324636	[0.023-0.042] unit decrease	Affymetrix [321169] (imputed)	N
1408	chr9	107900797	107900798	rs75114809	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	9q31.1	RN7SKP191	rs75114809-A	NR	2E-11		0.0322374	[0.023-0.042] unit decrease	Affymetrix [321114] (imputed)	N
1408	chr9	107910241	107910242	rs35211598	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	9q31.1	RP11-112N13.1	rs35211598-A	NR	2E-13		0.0365904	[0.027-0.046] unit decrease	Affymetrix [319769] (imputed)	N
1408	chr9	107911826	107911827	rs7042507	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	9q31.1	RP11-112N13.1	rs7042507-T	NR	2E-12		0.0352822	[0.025-0.045] unit decrease	Affymetrix [319769] (imputed)	N
1408	chr9	107953419	107953420	rs185048341	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD33dim HLA DR+ CD11b- Absolute Count	1,858 Sardinian (founder/genetic isolate) ancestry individuals	NA	9q31.1		rs185048341-A	0.01755	4E-8		0.6561	[0.42-0.89] unit decrease	Illumina [17203588] (imputed)	N
1408	chr9	107963284	107963285	rs184964366	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	9q31.1	NR	rs184964366-?	NR	2E-12				Affymetrix [~ 8270000] (imputed)	N
1408	chr9	107965635	107965636	rs112794173	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	9q31.1	RP11-112N13.1	rs112794173-A	NR	5E-9		0.0445986	[0.03-0.06] unit decrease	Affymetrix [319769] (imputed)	N
1408	chr9	107965635	107965636	rs112794173	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	9q31.1	RP11-112N13.1	rs112794173-A	NR	3E-9		0.0450563	[0.03-0.06] unit decrease	Affymetrix [319769] (imputed)	N
1410	chr9	108245048	108245049	rs147009496	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	9q31.2	FSD1L	rs147009496-A	0.9982	2E-6		1.0011	[0.59-1.41] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1411	chr9	108335228	108335229	rs1018849	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	9q31.2	FSD1L	rs1018849-?	NR	7E-6	(LPE 18:1)	0.22176635	[0.13-0.32] unit increase	Affymetrix [at least 2500000] (imputed)	N
1412	chr9	108409040	108409041	rs4742654	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	28,092 non-Hispanic White ancestry cases, 50,487 non-Hispanic White ancestry controls, 31,852 European ancestry cases, 428,084 European ancestry controls	NA		NR	rs4742654-T	NR	2E-9		1.0462		Affymetrix [9869154] (imputed)	N
1412	chr9	108412134	108412135	rs12339058	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 20)	2,187 European ancestry individuals	NA	9q31.2	NR	rs12339058-G	0.05204	3E-6		0.3225	[0.19-0.46] unit increase	Illumina [10677593] (imputed)	N
1412	chr9	108427061	108427062	rs1463984	20125193	Cirulli ET	2010-02-03	Eur J Hum Genet	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American individuals, up to 74 South Asian ancestry individuals	NA	9q31.2	TAL2	rs1463984-?	NR	3E-6	(Colorword)			Illumina [up to 563855]	N
1412	chr9	108440541	108440542	rs10120372	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue/subcutaneous adipose tissue ratio	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	9q31.2	TAL2, FCMD, TMEM38B	rs10120372-C	0.06	4E-6	(men)			Affymetrix, Illumina [2500000] (imputed)	N
1413	chr9	108538199	108538200	rs12336042	31006051	Kharazmi M	2019-04-20	Calcif Tissue Int	A Genome-Wide Association Study of Bisphosphonate-Associated Atypical Femoral Fracture.	Bisphosphonate-associated atypical femoral fracture	50 European ancestry cases, 1 Chilean ancestry case, 4,891 European ancestry controls	NA	9q31.2	TMEM38B	rs12336042-A	0.015	3E-7		6.731	[3.252-13.93]	Illumina [7585874] (imputed)	N
1413	chr9	108582040	108582041	rs11556063	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs autism spectrum disorder (ordinary least squares (OLS))	40,675 schizophrenia cases, 18,381 autism spectrum disorder cases	NA	9q31.2		rs11556063-?	NR	3E-8		0.0168	NR unit increase	NR [4484088] (imputed)	N
1413	chr9	108631949	108631950	rs9969729	22881374	Cummings AC	2012-09-01	Ann Hum Genet	Genome-wide association and linkage study in the Amish detects a novel candidate late-onset Alzheimer disease gene.	Alzheimer's disease (late onset)	109 Amish cases, 689 Amish controls	NA	9q31.2	intergenic	rs9969729-A	0.08	2E-6				Affymetrix [614963]	N
1413	chr9	108655095	108655096	rs4742971	18464913	Melzer D	2008-05-09	PLoS Genet	A genome-wide association study identifies protein quantitative trait loci (pQTLs).	Protein quantitative trait loci	1,200 European ancestry individuals	up to 4,590 European ancestry individuals	9q31.2	TMEM38B	rs4742971-?	0.11	8E-7	(GPT (ALT))			Illumina [496032]	N
1414	chr9	108661115	108661116	rs10978335	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	9q31.2	TMEM38B	rs10978335-G	0.493759	2E-8		0.0112057	[0.0073-0.0151] unit decrease	Affymetrix [NR] (imputed)	N
1414	chr9	108681245	108681246	rs2417661	34404834	Sin S	2021-08-17	Sci Rep	A genome-wide association study of quantitative computed tomographic emphysema in Korean populations.	Emphysema in chronic obstructive pulmonary disease	514 Korean ancestry individuals	NA	9q31.2		rs2417661-?	NR	7E-7		1.51	[0.92-2.1] unit decrease	NR [599248] (imputed)	N
1414	chr9	108708790	108708791	rs7857594	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	9q31.2	Intergenic	rs7857594-C	0.4024	9E-10	(MTAG)	0.0112	[0.0077-0.0147] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1414	chr9	108710858	108710859	rs4466452	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	9q31.2	Intergenic	rs4466452-A	0.4041	7E-9		0.0115	[0.0076-0.0154] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1414	chr9	108733683	108733684	rs55721325	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	9q31.2	Intergenic	rs55721325-A	0.3758	1E-10	(MTAG)	0.011	[0.0077-0.0143] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1414	chr9	108734683	108734684	rs112599205	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	9q31.2	NR	rs112599205-A	0.0298	7E-9		0.0183624	[0.012-0.025] unit increase	NR [9732723] (imputed)	N
1414	chr9	108735392	108735393	rs10739217	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9q31.2		rs10739217-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1414	chr9	108735392	108735393	rs10739217	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	9q31.2	NR	rs10739217-?	NR	3E-10				Affymetrix [NR]	N
1414	chr9	108754868	108754869	rs111930716	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	9q31.2	intergenic	rs111930716-A	0.0282	9E-6		1.1587	[1.09-1.22]	NR [9372253] (imputed)	N
1414	chr9	108755621	108755622	rs55932213	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Alcohol consumption (drinks per week)	up to 357,854 European ancestry individuals	NA	9q31.2	TMEM38B	rs55932213-G	0.746	1E-8		0.0165	[0.011-0.022] unit increase	Illumina [~ 250000] (imputed)	N
1414	chr9	108755621	108755622	rs55932213	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Alcohol consumption (drinks per week)	414,343 European ancestry individuals	NA	9q31.2	TMEM38B	rs55932213-A	0.2543	3E-8		0.014134835	[0.0091-0.0192] unit decrease	Affymetrix [11514936] (imputed)	N
1414	chr9	108755621	108755622	rs55932213	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	9q31.2	NR	rs55932213-G	0.736	5E-9		0.0089515	[0.006-0.0119] unit increase	NR [~ 9732723] (imputed)	N
1414	chr9	108755621	108755622	rs55932213	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week)	up to 941,280 European ancestry individuals	NA	9q31.2	NR	rs55932213-G	0.736387	1E-8	(Conditioned on chr9:109345993)	0.009488271	[0.0062-0.0127] unit increase	NR [~ 10000000] (imputed)	N
1414	chr9	108757669	108757670	rs10816359	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	9q31.2	TMEM38B	rs10816359-T	0.86	2E-8		0.04	[0.024-0.056] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
1414	chr9	108779342	108779343	rs112426363	33190678	Ho YYW	2020-10-01	Twin Res Hum Genet	Comparison of Genome-Wide Association Scans for Quantitative and Observational Measures of Human Hair Curvature.	Hair curvature (quantitative)	2,225 European ancestry individuals	NA	9q31.2	NR	rs112426363-?		8E-6		0.038	[0.021-0.055] unit increase	Illumina [7533529] (imputed)	N
1415	chr9	108835459	108835460	rs80068096	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Scarlet fever	6,812 European ancestry cases, 113,837 European ancestry controls	NA	9q31.2	NR	rs80068096-?	NR	8E-6		0.4188	[0.24-0.6] unit decrease	Illumina [at least 560000] (imputed)	N
1415	chr9	108846444	108846445	rs971415	33568662	Dashti HS	2021-02-10	Nat Commun	Genetic determinants of daytime napping and effects on cardiometabolic health.	Daytime nap	452,633 European ancestry individuals	541,333 European ancestry individuals	9q31.2	TMEM38B, FKTN	rs971415-A		1E-13		0.0098	[0.0073-0.0123] unit increase	Affymetrix [13304133] (imputed)	N
1415	chr9	108869413	108869414	rs9409078	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	9q31.2	Intergenic	rs9409078-C	0.8852	1E-8		0.0173	[0.011-0.023] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1415	chr9	108870585	108870586	rs7036973	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	9q31.2	Intergenic	rs7036973-A	0.1147	1E-9	(MTAG)	0.017	[0.012-0.022] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1415	chr9	108870585	108870586	rs7036973	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	9q31.2	Intergenic	rs7036973-A	0.1147	4E-10	(MTAG)	0.0162	[0.011-0.021] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1415	chr9	108878029	108878030	rs9299118	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	9q31.2	RP11-6F6.1	rs9299118-A	NR	3E-8		0.0275402	[0.018-0.037] unit decrease	Affymetrix [321114] (imputed)	N
1415	chr9	108890520	108890521	rs9408815	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in non-smokers	77,113 European ancestry women, 47,319 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	9q31.2	TMEM38B	rs9408815-C	0.751	2E-11		0.024	[0.016-0.032] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1415	chr9	108890520	108890521	rs9408815	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	9q31.2	TMEM38B	rs9408815-C	NR	3E-11				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1415	chr9	108890520	108890521	rs9408815	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	9q31.2	TMEM38B	rs9408815-C	0.75	1E-11		0.023	[0.017-0.029] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1415	chr9	108896129	108896130	rs7868164	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	9q31.2		rs7868164-?	NR	6E-8				NR [~ 8900000] (imputed)	N
1415	chr9	108897343	108897344	rs1516886	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	9q31.2	Intergenic	rs1516886-C	0.189	3E-8	(MTAG)	0.0093	[0.006-0.0126] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1415	chr9	108897516	108897517	rs9409081	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	9q31.2	RP11-6F6.1	rs9409081-G	NR	4E-9		0.0213716	[0.014-0.028] unit decrease	Affymetrix [321114] (imputed)	N
1415	chr9	108901048	108901049	rs9409082	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in non-smokers	77,113 European ancestry women, 47,319 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	9q31.2	TMEM38B	rs9409082-C	0.76	2E-10		0.024	[0.016-0.032] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1415	chr9	108901048	108901049	rs9409082	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	9q31.2	TMEM38B	rs9409082-C	NR	7E-11				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1415	chr9	108907266	108907267	rs1516883	29773799	Horikoshi M	2018-05-17	Nat Commun	Elucidating the genetic architecture of reproductive ageing in the Japanese population.	Menarche (age at onset)	67,029 Japanese ancestry women	73,397 European ancestry women	9q31.2	TMEM38B	rs1516883-G	0.53	4E-12	(japanese)	0.06	[0.04-0.08] year increase	Illumina [at least 532488] (imputed)	N
1415	chr9	108909846	108909847	rs9409085	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	9q31.2	NR	rs9409085-?	NR	1E-16				Affymetrix [~ 8270000] (imputed)	N
1415	chr9	108911978	108911979	rs9408817	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (late vs. average onset voice breaking)	11,334 European ancestry late onset individuals, 172,138 European ancestry average onset individuals	NA	9q31.2		rs9408817-G	NR	6E-15		0.00670448	[0.005-0.0084] years increase	NR [7400000] (imputed)	N
1415	chr9	108911978	108911979	rs9408817	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (late vs. average onset facial hair)	26,066 European ancestry late onset individuals, 161,175 European ancestry average onset individuals	NA	9q31.2		rs9408817-G	NR	6E-8		0.0066498	[0.0043-0.009] years increase	NR [7400000] (imputed)	N
1415	chr9	108911978	108911979	rs9408817	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (early vs. average onset voice breaking)	8,245 European ancestry early onset individuals, 172,138 European ancestry average onset individuals	NA	9q31.2		rs9408817-G	NR	2E-10		0.00480491	[0.0033-0.0063] years decrease	NR [7400000] (imputed)	N
1415	chr9	108911978	108911979	rs9408817	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (early vs. average onset facial hair)	13,226 European ancestry early onset individuals, 161,175 European ancestry average onset individuals	NA	9q31.2		rs9408817-G	NR	2E-8		0.00540125	[0.0035-0.0073] years decrease	NR [7400000] (imputed)	N
1415	chr9	108911978	108911979	rs9408817	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (age at voice breaking MTAG)	205,354 European ancestry individuals	NA	9q31.2		rs9408817-G	NR	1E-32		0.04112441	[0.034-0.048] years increase	NR [7400000] (imputed)	N
1415	chr9	108911978	108911979	rs9408817	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Age at voice drop	55,871 European ancestry individuals	NA	9q31.2	TMEM38B, ZNF462	rs9408817-?	NR	2E-10		0.037	[0.025-0.048] unit increase	Illumina [12039491]	N
1415	chr9	108916008	108916009	rs10978430	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	9q31.2		rs10978430-?	NR	4E-104				NR [~ 8900000] (imputed)	N
1415	chr9	108916710	108916711	rs12686569	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Menarche (age at onset)	76,831 European ancestry individuals	NA	9q31.2	TMEM38B, ZNF462	rs12686569-?	NR	2E-34		0.057	[0.066-0.048] unit decrease	Illumina [12039492]	N
1415	chr9	108918626	108918627	rs7032974	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	9q31.2	TMEM38B	rs7032974-T	0.7188	2E-8	(men)	0.0381	[0.025-0.051] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1415	chr9	108918626	108918627	rs7032974	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	9q31.2	TMEM38B	rs7032974-T	0.7188	2E-7		0.0228	[0.014-0.031] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1415	chr9	108918626	108918627	rs7032974	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	9q31.2	TMEM38B	rs7032974-T	0.7188	1E-7	(women)	0.0361	[0.023-0.05] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1415	chr9	108918626	108918627	rs7032974	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	9q31.2	TMEM38B	rs7032974-T	0.719	1E-8	(men)	0.0434	[0.029-0.058] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1415	chr9	108918626	108918627	rs7032974	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	9q31.2	TMEM38B	rs7032974-T	0.7188	8E-6		0.0229	[0.013-0.033] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1415	chr9	108918626	108918627	rs7032974	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	9q31.2	TMEM38B	rs7032974-T	0.7163	5E-9	(EA, men)	0.0459	[0.03-0.061] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1415	chr9	108918626	108918627	rs7032974	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	9q31.2	TMEM38B	rs7032974-T	0.7151	7E-8	(women)	0.0417	[0.027-0.057] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1415	chr9	108918626	108918627	rs7032974	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	9q31.2	TMEM38B	rs7032974-?	0.7188	2E-7	(women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1415	chr9	108918626	108918627	rs7032974	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	9q31.2	TMEM38B	rs7032974-?	0.7188	2E-6				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1415	chr9	108918626	108918627	rs7032974	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	9q31.2	TMEM38B	rs7032974-?	0.7188	1E-8	(men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1415	chr9	108918626	108918627	rs7032974	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	9q31.2	TMEM38B	rs7032974-?	0.7183	2E-8	(EA, men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1415	chr9	108920219	108920220	rs10453225	29773799	Horikoshi M	2018-05-17	Nat Commun	Elucidating the genetic architecture of reproductive ageing in the Japanese population.	Menarche (age at onset)	67,029 Japanese ancestry women	73,397 European ancestry women	9q31.2	NR	rs10453225-G	0.5226	3E-11	(Japanese)	0.058	[0.04-0.076] year increase	Illumina [at least 532488] (imputed)	N
1415	chr9	108920219	108920220	rs10453225	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	9q31.2	TMEM38B	rs10453225-G	0.68	6E-66		0.09	[0.08-0.1] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
1416	chr9	108925445	108925446	rs7020666	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	9q31.2	TMEM38B	rs7020666-C	0.7075	3E-8	(EA, men)	0.0394	[0.025-0.053] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1416	chr9	108925445	108925446	rs7020666	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	9q31.2	TMEM38B	rs7020666-C	0.7075	1E-7	(EA)	0.0246	[0.016-0.034] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1416	chr9	108925445	108925446	rs7020666	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	9q31.2	TMEM38B	rs7020666-C	0.7075	1E-6	(EA)	0.0251	[0.015-0.035] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1416	chr9	108925445	108925446	rs7020666	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	9q31.2	TMEM38B	rs7020666-?	0.7075	5E-7	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1416	chr9	108936673	108936674	rs7861820	19448621	He C	2009-05-17	Nat Genet	Genome-wide association studies identify loci associated with age at menarche and age at natural menopause.	Menarche and menopause (age at onset)	17,438 European ancestry female individuals	NA	9q31.2	intergenic	rs7861820-C	0.48	3E-9	(age at menarche)	0.09	[0.06-0.12] years decrease	Illumina [317759]	N
1416	chr9	108941508	108941509	rs10156597	29773799	Horikoshi M	2018-05-17	Nat Commun	Elucidating the genetic architecture of reproductive ageing in the Japanese population.	Menopause (age at onset)	43,861 Japanese ancestry women	32,545 European ancestry women	9q31.2	NR	rs10156597-A	0.5265	2E-10	(Japanese)	0.056	[0.038-0.074] year increase	Illumina [at least 532488] (imputed)	N
1416	chr9	108943800	108943801	rs34575265	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9q31.2		rs34575265-?	NR	9E-50				NR [~ 8900000] (imputed)	N
1416	chr9	108947615	108947616	rs142062162	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	9q31.2		rs142062162-G	0.964	2E-8		0.02	[0.014-0.026] unit decrease	NR [NR] (imputed)	N
1416	chr9	108949158	108949159	rs10978435	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	9q31.2	NR	rs10978435-T	0.684418	5E-16		0.0175351	[0.013-0.022] unit increase	Affymetrix [16583148] (imputed)	N
1416	chr9	108949595	108949596	rs12347838	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	9q31.2		rs12347838-T	0.687	1E-12		0.009	[0.007-0.011] unit decrease	NR [NR] (imputed)	N
1416	chr9	108967087	108967088	rs2090409	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	9q31.2	NR	rs2090409-C	0.684309	2E-16		0.0257758	[0.019-0.032] unit increase	Affymetrix [16577313] (imputed)	N
1416	chr9	108967087	108967088	rs2090409	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	9q31.2	NR	rs2090409-C	0.684057	2E-21		0.0309321	[0.024-0.037] unit increase	Affymetrix [16577424] (imputed)	N
1416	chr9	108967087	108967088	rs2090409	23449627	Cousminer DL	2013-02-27	Hum Mol Genet	Genome-wide association and longitudinal analyses reveal genetic loci linking pubertal height growth, pubertal timing and childhood adiposity.	Pubertal anthropometrics	up to 5,043 European ancestry males, up to 5,756 European ancestry females	NA	9q31.2	TMEM38B	rs2090409-C	0.66	2E-6	(Late pubertal growth, males)	0.11	[0.065-0.155] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1416	chr9	108967087	108967088	rs2090409	21102462	Elks CE	2010-11-21	Nat Genet	Thirty new loci for age at menarche identified by a meta-analysis of genome-wide association studies.	Menarche (age at onset)	86,142 European ancestry female individuals, 557 Old Order Amish (founder/genetic isolate) female individuals, 1,103 Erasmus Rucphen (founder/genetic isolate) female individuals	Up to 12,813 European ancestry female individuals, 910 Val Borbera (founder/genetic isolate) female individuals, 348 Orcadian (founder/genetic isolate) female individuals, 338 Friuli Venezia Giulia (founder/genetic isolate) female individuals, 322 Carlantino (founder/genetic/isolate) female individuals	9q31.2	TMEM38B	rs2090409-A	0.31	2E-33		4.7	[3.92-5.48] week decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1416	chr9	108967087	108967088	rs2090409	19448620	Perry JR	2009-05-17	Nat Genet	Meta-analysis of genome-wide association data identifies two loci influencing age at menarche.	Menarche (age at onset)	17,510 European ancestry female individuals	NA	9q31.2	ZNF462, SLC44A1, FKTN, TAL2, FSD1L, TMEM38B	rs2090409-A	0.31	2E-9		0.1	[0.06-0.14] years decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1416	chr9	108971139	108971139	rs777352006	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	9q31.2	intergenic	rs777352006-ATT	0.652252	3E-12		0.015347	[0.011-0.02] unit increase	NR [16516521] (imputed)	N
1416	chr9	109009494	109009495	rs10512344	29626450	Bonfiglio F	2018-04-04	Gastroenterology	Female-specific Association Between Variants on Chromosome 9 and Self-reported Diagnosis of Irritable Bowel Syndrome.	Irritable bowel syndrome	7,130 British ancestry women cases, 2,446 British ancestry men cases, 178,076 British ancestry women controls, 158,423 British ancestry men controls	NA	9q31.2	intergenic	rs10512344-C	0.0404	4E-10	(women)	0.245	[0.17-0.32] unit increase	Affymetrix [7287191] (imputed)	N
1416	chr9	109009494	109009495	rs10512344	29626450	Bonfiglio F	2018-04-04	Gastroenterology	Female-specific Association Between Variants on Chromosome 9 and Self-reported Diagnosis of Irritable Bowel Syndrome.	Irritable bowel syndrome	7,130 British ancestry women cases, 2,446 British ancestry men cases, 178,076 British ancestry women controls, 158,423 British ancestry men controls	NA	9q31.2	Intergenic	rs10512344-C	0.04	4E-8		0.19	[0.12-0.26] unit increase	Affymetrix [7287191] (imputed)	N
1416	chr9	109010798	109010799	rs1484372	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	9q31.2	TMEM38B	rs1484372-G	0.2159	3E-11		1.064	NR	Affymetrix [9154080] (imputed)	N
1417	chr9	109053333	109053334	rs56057588	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	L1-L4 bone mineral density x serum urate levels interaction	2,207 men, 2,354 women	NA		LINC01505	rs56057588-?	NR	8E-6	(male)	1.00119	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1417	chr9	109054416	109054417	rs10739220	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Nevus count or cutaneous melanoma	36,760 European ancestry cutaneous melanoma cases, 375,188 European ancestry controls, 12,930 European ancestry individuals, 52,847 individuals	NA	9q31.2	RP11-308N19.1	rs10739220-C	0.26044	6E-22				Affymetrix, Illumina [NR] (imputed)	N
1417	chr9	109054416	109054417	rs10739220	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous melanoma or hair colour	36,760 European ancestry cutaneous melanoma cases, 375,188 European ancestry controls, 352,662 European ancestry individuals	NA	9q31.2	RP11-308N19.1	rs10739220-C	0.26044	7E-27				Affymetrix, Illumina [NR] (imputed)	N
1417	chr9	109054416	109054417	rs10739220	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous malignant melanoma	36,760 European ancestry cases, 375,188 European ancestry controls	NA	9q31.2	RP11-308N19.1	rs10739220-C	0.2604	1E-18		1.1036	NR	Affymetrix, Illumina [NR] (imputed)	N
1417	chr9	109054416	109054417	rs10739220	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	9q31.2		rs10739220-?	NR	1E-18				NR [~ 8900000] (imputed)	N
1417	chr9	109060829	109060830	rs10739221	28212542	Ransohoff KJ	2017-02-09	Oncotarget	Two-stage genome-wide association study identifies a novel susceptibility locus associated with melanoma.	Melanoma	4,842 European ancestry cases, 286,565 European ancestry controls	1,804 European ancestry cases, 1,026 European ancestry controls	9q31.2	TMEM38B, RAD23B, TAL2	rs10739221-T	0.24	7E-11		1.13	[NR]	Illumina [at least 560000] (imputed)	N
1417	chr9	109060829	109060830	rs10739221	26237428	Law MH	2015-08-03	Nat Genet	Genome-wide meta-analysis identifies five new susceptibility loci for cutaneous malignant melanoma.	Cutaneous malignant melanoma	12,874 European ancestry cases, 23,203 European ancestry controls	785 European ancestry cases, 791 European ancestry controls, 2,331 cases, 2,415 controls	9q31.2	TMEM38B, RAD23B, TAL2, ZNF462, KLF4	rs10739221-T	0.24	7E-11		0.12	[NR] unit increase	Affymetrix, Illumina [at least 1569314] (imputed)	N
1417	chr9	109060829	109060830	rs10739221	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	9q31.2	TMEM38B	rs10739221-C	0.77	4E-41		0.08	[0.068-0.092] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
1417	chr9	109063001	109063002	rs10125521	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	9q31.2	RP11-308N19.1	rs10125521-C	NR	9E-10		0.0205008	[0.014-0.027] unit decrease	Affymetrix [321114] (imputed)	N
1417	chr9	109063001	109063002	rs10125521	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	9q31.2		rs10125521-?	NR	6E-8				NR [~ 8900000] (imputed)	N
1417	chr9	109067560	109067561	rs1484375	30429480	Duffy DL	2018-11-14	Nat Commun	Novel pleiotropic risk loci for melanoma and nevus density implicate multiple biological pathways.	Nevus count or cutaneous melanoma	52,506 European ancestry individuals, 12,874 European ancestry cases, 23,203 European ancestry controls	NA	9q31.2	intergenic	rs1484375-?	NR	2E-10				Affymetrix, Illumina [7850345] (imputed)	N
1417	chr9	109072074	109072075	rs7024334	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	9q31.2		rs7024334-G	NR	4E-13		0.0154	[0.011-0.02] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1417	chr9	109072074	109072075	rs7024334	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	182,791 European ancestry individuals	NA	9q31.2	MIR8081	rs7024334-T	0.221183	4E-14		0.0285743	[0.021-0.036] unit decrease	NR [16426330] (imputed)	N
1417	chr9	109072074	109072075	rs7024334	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	9q31.2	NR	rs7024334-?	NR	8E-9				Affymetrix [~ 8270000] (imputed)	N
1417	chr9	109072074	109072075	rs7024334	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	9q31.2		rs7024334-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1417	chr9	109072074	109072075	rs7024334	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	9q31.2	NA	rs7024334-T	0.2254	5E-12		0.0135	[0.0096-0.0174] unit increase	NR [~ 27400000] (imputed)	N
1417	chr9	109072074	109072075	rs7024334	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	9q31.2	NA	rs7024334-T	0.2254	5E-12		0.0135	[0.0096-0.0174] unit increase	NR [~ 27400000] (imputed)	N
1417	chr9	109072074	109072075	rs7024334	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	9q31.2	NR	rs7024334-T	NR	2E-6		0.014	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
1417	chr9	109072074	109072075	rs7024334	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	9q31.2	TMEM38B, MIR8081	rs7024334-G	0.77	1E-8		0.015	[0.0091-0.0209] unit decrease	Illumina [6108953] (imputed)	N
1417	chr9	109150783	109150784	rs2135745	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		9q31.2	ZNF462	rs2135745-C	0.2485	1E-8		0.00912756	[0.006-0.0123] unit increase	Affymetrix [12370749]	N
1417	chr9	109152708	109152709	rs117932393	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	9q31.2	TMEM38B, ZNF462	rs117932393-C	0.01	6E-7		0.5563	[0.34-0.77] unit increase	Illumina [~ 9000000] (imputed)	N
1417	chr9	109152708	109152709	rs117932393	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	9q31.2	TMEM38B, ZNF462	rs117932393-C	0.01	4E-7	(EA)	0.58	[0.36-0.8] unit increase	Illumina [~ 9000000] (imputed)	N
1417	chr9	109177570	109177571	rs902144	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	9q31.2	RP11-308N19.1	rs902144-C	NR	1E-8		0.0174761	[0.011-0.023] unit increase	Affymetrix [323123] (imputed)	N
1417	chr9	109177570	109177571	rs902144	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	9q31.2	LINC01505	rs902144-C	0.4806	7E-13		0.0139	[0.01-0.018] unit increase	Affymetrix [18391927] (imputed)	N
1417	chr9	109177570	109177571	rs902144	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	9q31.2	NR	rs902144-?	NR	2E-11				Affymetrix [~ 8270000] (imputed)	N
1417	chr9	109177570	109177571	rs902144	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9q31.2		rs902144-?	NR	3E-36				NR [~ 8900000] (imputed)	N
1418	chr9	109195927	109195928	rs10978481	30279531	Baselmans BML	2018-10-02	Sci Rep	A genetic perspective on the relationship between eudaimonic -and hedonic well-being.	Eudaimonic well-being	108,154 British ancestry individuals	NA	9q31.2	NR	rs10978481-C	0.421176	4E-7		5.08826	[NR] z score decrease	Affymetrix [~ 8600000] (imputed)	N
1418	chr9	109201961	109201962	rs11331361	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	9q31.2	LINC01505	rs11331361-G	0.5113	4E-6		0.0299	[0.017-0.043] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1418	chr9	109243343	109243344	rs11789496	34197840	Mehrotra R	2021-06-28	Kidney Int	A genome-wide association study suggests correlations of common genetic variants with peritoneal solute transfer rates in patients with kidney failure receiving peritoneal dialysis.	Peritoneal solute transfer rates in kidney failure treated with peritoneal dialysis	2,212 White ancestry individuals	NA	9q31.2		rs11789496-?	NR	4E-7		0.02	[0.01-0.03] unit increase	Illumina [7066544] (imputed)	N
1418	chr9	109252067	109252068	rs78252854	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	9q31.2	RP11-308N19.1	rs78252854-T	0.151195	6E-11		0.020668456	[0.014-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1418	chr9	109311145	109311146	rs10816394	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	9q31.2		rs10816394-A	0.42	5E-12		6.92	z score increase	Affymetrix [9061022] (imputed)	N
1419	chr9	109328164	109328165	rs10978543	29970889	Day FR	2018-07-03	Nat Commun	Elucidating the genetic basis of social interaction and isolation.	Regular attendance at a pub or social club	124,047 European ancestry cases, 328,255 European ancestry controls	NA	9q31.2	ZNF462	rs10978543-A	0.721182	9E-9		0.00586489	[0.0039-0.0079] unit increase	NR [NR] (imputed)	N
1419	chr9	109329443	109329444	rs4743007	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Problematic alcohol use (MTAG)	972,915 European ancestry individuals	NA	9q31.2	NR	rs4743007-C	0.3069	6E-9		0.015266576	[0.01-0.02] unit decrease	Affymetrix [10613246] (imputed)	N
1419	chr9	109330235	109330236	rs4743009	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Alcohol consumption (drinks per week)	up to 357,854 European ancestry individuals	NA	9q31.2	ZNF462	rs4743009-A	0.201	7E-9		0.0183	[0.012-0.025] unit decrease	Illumina [~ 250000] (imputed)	N
1419	chr9	109331093	109331094	rs74424378	31358974	Evangelou E	2019-07-29	Nat Hum Behav	New alcohol-related genes suggest shared genetic mechanisms with neuropsychiatric disorders.	Alcohol consumption	480,842 European ancestry individuals	NA	9q31.2	RP11-308N19.1, ZNF462	rs74424378-T	0.76	2E-13		0.009	[0.007-0.011] unit increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1419	chr9	109331093	109331094	rs74424378	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter alcoholic beverage consumption	336,448 European ancestry individuals	39,924 European ancestry individuals	9q31.2	MIR8081	rs74424378-T	0.7621	5E-9		0.007	[0.0046-0.0094] unit increase	Affymetrix [~ 7740000] (imputed)	N
1419	chr9	109331093	109331094	rs74424378	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	9q31.2	ZNF462	rs74424378-T	0.7637	2E-8		0.017082868	[0.011-0.023] unit increase	Affymetrix [~ 11515000] (imputed)	N
1419	chr9	109344058	109344059	rs4335177	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (positive Marder score)	1,390 European ancestry cases	NA	9q31.2		rs4335177-?	NR	4E-6	(MLM)	0.1834814	[0.11-0.26] unit increase	Illumina [~ 9000000] (imputed)	N
1419	chr9	109345992	109345993	rs10978550	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	9q31.2	NR	rs10978550-C	0.206	2E-12		0.0115167	[0.0083-0.0147] unit decrease	NR [~ 9732723] (imputed)	N
1419	chr9	109345992	109345993	rs10978550	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week)	up to 941,280 European ancestry individuals	NA	9q31.2	NR	rs10978550-C	0.206	7E-11		0.011748331	[0.0082-0.0153] unit decrease	NR [~ 10000000] (imputed)	N
1419	chr9	109353537	109353538	rs7028386	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol consumption (drinks per week) (MTAG)	972,915 European ancestry individuals	NA	9q31.2	NR	rs7028386-A	0.28	3E-9		0.011358867	[0.0076-0.0151] unit decrease	Affymetrix [NR] (imputed)	N
1419	chr9	109378079	109378080	rs969650	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	9q31.2	ZNF462	rs969650-T	0.6432	2E-8		0.011741758	[0.0076-0.0159] unit increase	Affymetrix [11514654] (imputed)	N
1419	chr9	109434115	109434116	rs538017817	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	9q31.2	NR	rs538017817-?	NR	6E-6		4.539	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1419	chr9	109437967	109437968	rs3919995	26030696	Cho MH	2015-06-01	Am J Respir Crit Care Med	A Genome-Wide Association Study of Emphysema and Airway Quantitative Imaging Phenotypes.	Emphysema imaging phenotypes	5,385 European ancestry chronic obstructive pulmonary disease cases, 901 African American chronic obstructive pulmonary disease cases, 3,613 European ancestry controls, 2,132 African American controls	NA	9q31.2	ZNF462	rs3919995-A	NR	1E-7	(%LAA-950, All)	0.08	[0.035-0.125] unit decrease	Illumina [7600000] (imputed)	N
1420	chr9	109446276	109446277	rs12377606	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	9q31.2		rs12377606-A	0.8965	2E-8	(conditional-joint)	0.0129	[0.0084-0.0174] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1420	chr9	109446609	109446610	rs10512348	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	9q31.2	Intergenic	rs10512348-A	0.2827	5E-9	(MTAG)	0.0107	[0.0072-0.0142] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1420	chr9	109459871	109459872	rs74552897	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	9q31.2	ZNF462	rs74552897-G	0.977901	9E-9	(200 ms)	0.104014	[0.067-0.141] unit increase	Affymetrix [10000000] (imputed)	N
1420	chr9	109463805	109463806	rs80311040	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	9q31.2		rs80311040-T	0.021602	2E-17		0.0669983	[0.052-0.082] unit increase	Illumina [13479295] (imputed)	N
1420	chr9	109463805	109463806	rs80311040	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	9q31.2	LINC01505, ZNF462	rs80311040-?	NR	3E-11		0.07501055	[0.053-0.097] unit increase	Illumina [27896057] (imputed)	N
1420	chr9	109469082	109469083	rs1844776	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	9q31.2	LINC01505	rs1844776-T	0.408746	1E-10		0.0121682	[0.0085-0.0159] unit decrease	NR [13737936] (imputed)	N
1420	chr9	109469433	109469434	rs79423161	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	9q31.2		rs79423161-?	NR	3E-9		0.0230737	[0.015-0.031] unit decrease	Affymetrix [20259828] (imputed)	N
1420	chr9	109483516	109483517	rs1491106	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	9q31.2	TMEM38B/ZNF462	rs1491106-T	0.3764	3E-23		0.0245	[0.02-0.029] unit increase	Affymetrix [19819130] (imputed)	N
1420	chr9	109483516	109483517	rs1491106	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	9q31.2		rs1491106-?	NR	2E-32				NR [~ 8900000] (imputed)	N
1420	chr9	109488758	109488759	rs1352755	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	9q31.2		rs1352755-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1420	chr9	109488758	109488759	rs1352755	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	9q31.2		rs1352755-?	NR	4E-12		0.0143759	[0.01-0.018] unit decrease	Affymetrix [20259828] (imputed)	N
1420	chr9	109494623	109494624	rs7041150	31666285	Olafsson S	2019-10-30	Cancer Epidemiol Biomarkers Prev	Common and rare sequence variants influencing tumor biomarkers in blood.	Serum carcinoembryonic antigen levels	22,309 Icelandic ancestry individuals	NA	9q31.2	intergenic	rs7041150-A	0.378	2E-12		0.08	[0.10-0.06] unit decrease	Illumina [NR] (imputed)	N
1420	chr9	109496629	109496630	rs2451951	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FEV1/FVC)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		9q31.2	TMEM38B, ZNF462	rs2451951-T	0.49	1E-6	(EA)	0.002	[0.0012-0.0028] unit increase	Affymetrix, Illumina [10900000] (imputed)	N
1420	chr9	109496629	109496630	rs2451951	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FEV1/FVC)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		9q31.2	TMEM38B, ZNF462	rs2451951-T	0.47	2E-8		0.002	[0.0014-0.0026] unit increase	Affymetrix, Illumina [10900000] (imputed)	N
1420	chr9	109507431	109507432	rs6477542	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Interstitial lung disease	806 Japanese ancestry cases, 211,647 Japanese ancestry controls	NA	9q31.2		rs6477542-T	0.555217284	7E-9		1.3380809	[1.212525595-1.476637232]	Illumina [8919992] (imputed)	N
1420	chr9	109507544	109507545	rs10978620	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (unclassified genus belonging to the order Clostridiales)	1,068 Japanese ancestry individuals	NA	9q31.2	intergenic	rs10978620-T	0.13	9E-6		0.206	[0.12-0.3] unit decrease	Illumina [6380737] (imputed)	N
1420	chr9	109518207	109518208	rs2451948	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9q31.2		rs2451948-?	NR	5E-32				NR [~ 8900000] (imputed)	N
1420	chr9	109532733	109532734	rs4451364	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	9q31.2	NR	rs4451364-A	NR	3E-10		1.052	[1.04-1.07]	Affymetrix, Illumina [29235255] (imputed)	N
1420	chr9	109551449	109551450	rs10978640	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,931 Sub-Saharan African ancestry males	NA	9q31.2		rs10978640-T	0.0990778	5E-6		0.0215063	[0.012-0.031] unit increase	Illumina [13900000] (imputed)	N
1420	chr9	109555681	109555682	rs9987814	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	9q31.2		rs9987814-G	NR	6E-43		0.0199	[0.017-0.023] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1420	chr9	109565933	109565934	rs7849060	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	9q31.2	intergenic	rs7849060-T	0.71	1E-35		0.0263	[0.022-0.03] unit decrease	Affymetrix [18391927] (imputed)	N
1420	chr9	109571456	109571457	rs7027172	35079123	Chambers T	2022-01-25	Mol Psychiatry	Genetic common variants associated with cerebellar volume and their overlap with mental disorders: a study on 33,265 individuals from the UK-Biobank.	Total cerebellar volume (excluding Crus I vermis)	33,265 European ancestry individuals	NA	9q31.2		rs7027172-A	NR	2E-8		0.031	[0.02-0.042] unit decrease	Affymetrix [6193476] (imputed)	N
1420	chr9	109571456	109571457	rs7027172	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	9q31.2		rs7027172-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1421	chr9	109590147	109590148	rs7027205	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q31.2	NR	rs7027205-C	0.22296	3E-11				Affymetrix, Illumina [24332387] (imputed)	N
1421	chr9	109590147	109590148	rs7027205	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q31.2	NR	rs7027205-C	0.223454	4E-11				Affymetrix, Illumina [24558453] (imputed)	N
1421	chr9	109593972	109593973	rs10978654	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	9q31.2	RNA5SP292	rs10978654-C	NR	9E-13		0.0264352	[0.019-0.034] unit increase	Affymetrix [323123] (imputed)	N
1421	chr9	109599045	109599046	rs7027110	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	9q31.2	ZNF462	rs7027110-A	0.23	2E-13		0.031	[NR] unit increase	Affymetrix, Illumina [2834208] (imputed)	N
1421	chr9	109600190	109600191	rs62568582	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	9q31.2	EIF2B5, ABCF3	rs62568582-?		5E-8				NR [7428630] (imputed)	N
1421	chr9	109609553	109609554	rs7048022	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	9q31.2		rs7048022-?	NR	1E-12				NR [~ 8900000] (imputed)	N
1421	chr9	109614211	109614212	rs34473172	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	9q31.2	RNA5SP292	rs34473172-A	NR	2E-9		0.0280782	[0.019-0.037] unit increase	Affymetrix [323123] (imputed)	N
1421	chr9	109616023	109616024	rs6477545	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	9q31.2	LINC01505, ZNF462	rs6477545-?	NR	8E-19		0.028028889	[0.022-0.034] unit increase	Illumina [27896057] (imputed)	N
1421	chr9	109618473	109618474	rs10978661	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	9q31.2		rs10978661-C	NR	9E-10		0.0175	[0.012-0.023] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
1421	chr9	109618473	109618474	rs10978661	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	9q31.2		rs10978661-C	NR	2E-10		0.0188	[0.013-0.024] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
1421	chr9	109618865	109618867	rs56995152	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	9q31.2		rs56995152-A	0.29987	5E-12		0.016676188	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1421	chr9	109620810	109620811	rs12343333	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	9q31.2	NR	rs12343333-C	0.29918	9E-13		0.014387	[0.01-0.018] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
1421	chr9	109626811	109626812	rs118017926	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	9q31.2		rs118017926-C	0.02	2E-12		7.01	z score increase	Affymetrix [9061022] (imputed)	N
1421	chr9	109626811	109626812	rs118017926	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	9q31.2	NR	rs118017926-C	0.0261	1E-9				NR [9056863] (imputed)	N
1421	chr9	109626811	109626812	rs118017926	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	9q31.2	ZNF462	rs118017926-?		4E-9				NR [7428630] (imputed)	N
1421	chr9	109627912	109627913	rs4743033	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	9q31.2	NR	rs4743033-T	0.198081	5E-13		0.016694	[0.012-0.021] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
1421	chr9	109628050	109628051	rs73667301	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	9q31.2		rs73667301-?	NR	2E-22				NR [~ 8900000] (imputed)	N
1421	chr9	109628050	109628051	rs73667301	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	9q31.2	NR	rs73667301-G	0.0600656	3E-34		0.0793091	[0.067-0.092] unit increase	NR [19129689] (imputed)	N
1421	chr9	109628050	109628051	rs73667301	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		9q31.2	ZNF462	rs73667301-G	NR	7E-9		0.0747676	NR unit increase	NR [NR] (imputed)	N
1421	chr9	109632352	109632353	rs4743034	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	9q31.2	NR	rs4743034-A	NR	9E-15		0.022	[0.017-0.027] unit increase	Affymetrix [9000000] (imputed)	N
1421	chr9	109632352	109632353	rs4743034	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	9q31.2	NR	rs4743034-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1421	chr9	109632352	109632353	rs4743034	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	9q31.2	ZNF462	rs4743034-A	0.23	4E-9		1.05	[1.03-1.07]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1421	chr9	109632352	109632353	rs4743034	18391951	Gudbjartsson DF	2008-04-06	Nat Genet	Many sequence variants affecting diversity of adult human height.	Height	30,968 European ancestry individuals	8,541 European ancestry individuals	9q31.2	ZNF462	rs4743034-A	0.23	2E-8		5.3	[3.54-7.06] % s.d. increase	Affymetrix, Illumina [up to 304226]	N
1421	chr9	109635617	109635618	rs7033661	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	9q31.2	ZNF462	rs7033661-A	0.6461	6E-6		0.0306	[0.017-0.044] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1421	chr9	109638166	109638167	rs9299129	31624269	Terao C	2019-10-17	Nat Commun	GWAS of mosaic loss of chromosome Y highlights genetic effects on blood cell differentiation.	Mosaic loss of chromosome Y (Y chromosome dosage)	95,380 Japanese men	NA	9q31.2	ZNF462	rs9299129-G	0.23	2E-9		0.03	NR unit increase	Illumina [9591901] (imputed)	N
1421	chr9	109639061	109639062	rs7874161	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	9q31.2	ZNF462	rs7874161-T	0.3504	5E-8	(EA, men)	0.0373	[0.024-0.051] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1421	chr9	109639061	109639062	rs7874161	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	9q31.2	ZNF462	rs7874161-?	0.3504	7E-8	(EA, men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1421	chr9	109643879	109643880	rs7858917	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	9q31.2	ZNF462	rs7858917-A	NR	2E-8		0.0174615	[0.011-0.024] unit increase	Affymetrix [321016] (imputed)	N
1421	chr9	109643879	109643880	rs7858917	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	9q31.2	ZNF462	rs7858917-A	NR	2E-9		0.020129	[0.014-0.027] unit increase	Affymetrix [323123] (imputed)	N
1421	chr9	109643879	109643880	rs7858917	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9q31.2		rs7858917-?	NR	1E-65				NR [~ 8900000] (imputed)	N
1421	chr9	109644109	109644110	rs7873103	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	9q31.2		rs7873103-A	NR	1E-8		0.0117	[0.0078-0.0156] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
1421	chr9	109644376	109644377	rs35699219	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	9q31.2		rs35699219-?	NR	9E-11				NR [~ 8900000] (imputed)	N
1421	chr9	109644864	109644865	rs6477547	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	9q31.2	NR	rs6477547-?	NR	4E-9	(male)	0.22197	[0.15-0.3] unit increase	Affymetrix [7794483] (imputed)	N
1421	chr9	109644864	109644865	rs6477547	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	9q31.2	NR	rs6477547-?	NR	3E-14		0.18097	[0.13-0.23] unit increase	Affymetrix [7794483] (imputed)	N
1421	chr9	109644864	109644865	rs6477547	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	9q31.2	NR	rs6477547-?	NR	2E-6	(female)	0.12507	[0.074-0.176] unit increase	Affymetrix [7794483] (imputed)	N
1421	chr9	109645986	109645987	rs4743038	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	9q31.2		rs4743038-T	NR	5E-10		0.0131	[0.009-0.0172] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
1421	chr9	109645986	109645987	rs4743038	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	9q31.2	ZNF462	rs4743038-T	0.198694	4E-11		0.018239258	[0.013-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1421	chr9	109670015	109670016	rs7020564	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	9q31.2	ZNF462	rs7020564-A	0.702174	1E-10		0.0100197	[0.007-0.0131] unit increase	Affymetrix [12370749]	N
1421	chr9	109670015	109670016	rs7020564	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	9q31.2	ZNF462	rs7020564-A	0.6985	7E-11		0.1105	[0.077-0.144] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1421	chr9	109676892	109676893	rs1858231	24025145	Chung S	2013-09-11	Breast Cancer Res	A genome-wide association study of chemotherapy-induced alopecia in breast cancer patients.	Adverse response to chemotherapy in breast cancer (alopecia) (anti-microtubule)	119 Japanese ancestry cases, 105 Japanese ancestry controls	NA		ZNF462	rs1858231-C	0.22	2E-6	(Allelic)	2.71	[1.79-4.12]	Illumina [555600]	N
1421	chr9	109677416	109677417	rs11789013	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	9q31.2		rs11789013-T	0.7585	1E-10		0.0106	[0.0075-0.0137] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1421	chr9	109685460	109685461	rs10978677	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	9q31.2	MIR548Q	rs10978677-?	NR	2E-15		0.03993032	[0.03-0.05] unit decrease	Illumina [27896057] (imputed)	N
1421	chr9	109689971	109689972	rs41277821	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	9q31.2	NR	rs41277821-T	NR	9E-12		0.0624	[0.045-0.08] unit increase	Affymetrix [9000000] (imputed)	N
1421	chr9	109695138	109695139	rs2134063	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	9q31.2	Intergenic	rs2134063-A	0.8404	1E-11	(MTAG)	0.0121	[0.0086-0.0156] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1422	chr9	109724366	109724367	rs11790439	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	9q31.2	NR	rs11790439-G		5E-11		0.1	[0.061-0.139] unit increase	NR [NR]	N
1422	chr9	109761403	109761404	rs2417761	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	9q31.2		rs2417761-?	NR	7E-8				NR [~ 8900000] (imputed)	N
1422	chr9	109762043	109762044	rs1876985	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	9q31.2	Intergenic	rs1876985-A	0.6865	4E-9	(MTAG)	0.0114	[0.0077-0.0151] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1422	chr9	109762043	109762044	rs1876985	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	9q31.2	Intergenic	rs1876985-A	0.6868	4E-12	(MTAG)	0.0123	[0.0088-0.0158] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1422	chr9	109764203	109764204	rs10978698	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	9q31.2	Intergenic	rs10978698-C	0.7465	5E-11		0.0171	[0.012-0.022] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1422	chr9	109765214	109765215	rs3764523	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	9q31.2	ZNF462	rs3764523-?		1E-15				Affymetrix, Illumina [NR] (imputed)	N
1422	chr9	109801147	109801148	rs60264690	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9q31.2	NR	rs60264690-A	0.01394	7E-10	(ACSM2B)	1.415	NR unit increase	Illumina [1671387] (imputed)	N
1422	chr9	109802436	109802437	rs568998724	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	Diastolic blood pressure	19,546 British ancestry individuals from 6863 families.	NA	9q31.2	intergenic	rs568998724-A	7.0E-4	3E-8		13.491984	[8.72-18.26] mmHg increase	Illumina [24111857] (imputed)	N
1422	chr9	109806161	109806162	rs138543081	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		9q31.2	Intergenic	rs138543081-T	0.009	1E-6	(liability model)	0.5	[0.3-0.7] unit increase	NR [19725427] (imputed)	N
1422	chr9	109806198	109806199	rs10759208	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	9q31.2	ZNF462, RAD23B	rs10759208-C	0.3862	4E-10		1.0251101		Affymetrix [11880941] (imputed)	N
1423	chr9	109909789	109909790	rs28525422	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9q31.2		rs28525422-?	NR	9E-13				NR [~ 8900000] (imputed)	N
1424	chr9	110021486	110021487	rs144160960	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Vascular endothelial growth factor levels	7,118 Finnish ancestry individuals	NA	9q31.2	NR	rs144160960-C		9E-6		0.2573	[0.14-0.37] SD units increase	NR [10700000] (imputed)	N
1424	chr9	110021486	110021487	rs144160960	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-12p70 levels	8,270 Finnish ancestry individuals	NA	9q31.2	NR	rs144160960-C		7E-6		0.246	[0.14-0.35] SD units increase	NR [10700000] (imputed)	N
1424	chr9	110030589	110030590	rs10978777	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque score in type 2 diabetes	691 African American individuals	205 African American individuals	9q31.2	intergenic	rs10978777-?	NR	1E-7		0.628	[0.31-0.95] unit decrease	Illumina [at least 13000000] (imputed)	N
1424	chr9	110049475	110049476	rs7031904	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	9q31.2		rs7031904-A	0.28	8E-9		5.76	z score increase	Affymetrix [9061022] (imputed)	N
1424	chr9	110049475	110049476	rs7031904	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	9q31.2	NR	rs7031904-A	0.3299	2E-8				NR [9056863] (imputed)	N
1424	chr9	110051319	110051320	rs10978785	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	9q31.2		rs10978785-T	0.29	3E-11		6.66	z score increase	Affymetrix [9061022] (imputed)	N
1424	chr9	110054698	110054699	rs2147071	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	9q31.2		rs2147071-?	NR	5E-9				NR [9705931] (imputed)	N
1424	chr9	110098821	110098822	rs817839	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	9q31.2		rs817839-A	0.25	1E-11		6.79	z score increase	Affymetrix [9061022] (imputed)	N
1424	chr9	110098821	110098822	rs817839	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	9q31.2	NR	rs817839-A	0.2871	9E-11				NR [9056863] (imputed)	N
1425	chr9	110101709	110101710	rs817845	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	9q31.2	RAD23B	rs817845-?		5E-8				NR [7428630] (imputed)	N
1425	chr9	110103100	110103101	rs817847	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9q31.2		rs817847-?	NR	6E-9				NR [~ 8900000] (imputed)	N
1425	chr9	110114438	110114438	rs34359516	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9q31.2	NR	rs34359516-A	0.01742	6E-16	(C5)	0.05463	NR unit increase	Illumina [1671387] (imputed)	N
1425	chr9	110125810	110125811	rs817858	20966902	Croteau-Chonka DC	2010-10-21	Obesity (Silver Spring)	Genome-wide association study of anthropometric traits and evidence of interactions with age and study year in Filipino women.	Body mass index	1,780 Filipino ancestry females	NA	9q31.2	RAD23B	rs817858-G	0.13	7E-6		0.04	[0.02-0.06] unit increase	Affymetrix [2073674] (imputed)	N
1425	chr9	110144886	110144887	rs817872	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	9q31.2	NR	rs817872-C	NR	5E-22		1.071	[1.06-1.09]	Affymetrix, Illumina [29235255] (imputed)	N
1425	chr9	110145834	110145834	rs67131978	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Prostate cancer	11,599 European ancestry cases, 199,628 European ancestry controls, 5,672 East Asian ancestry cases, 84,660 East Asian ancestry controls	NA	9q31.2		rs67131978-AGCCTC	NR	9E-9		0.0828	[0.055-0.111] unit decrease	Affymetrix, Illumina [25775424] (imputed)	N
1425	chr9	110156299	110156300	rs817826	23023329	Xu J	2012-09-30	Nat Genet	Genome-wide association study in Chinese men identifies two new prostate cancer risk loci at 9q31.2 and 19q13.4.	Prostate cancer	1,417 Han Chinese ancestry cases, 1,008 Han Chinese ancestry controls	3,067 Han Chinese ancestry cases, 7,926 Han Chinese ancestry controls	9q31.2	KLF4, RAD23B	rs817826-C	0.084	5E-14		1.41	[1.29-1.54]	Illumina [587294]	N
1425	chr9	110167752	110167753	rs10978836	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	9q31.2		rs10978836-?	NR	7E-19				NR [~ 8900000] (imputed)	N
1426	chr9	110241170	110241171	rs143150534	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	9q31.2	KLF4	rs143150534-A	0.0189131404102806	4E-6	(G_Barnesiella_HB)	1.06399	[0.61-1.52] unit decrease	Illumina [7711310] (imputed)	N
1426	chr9	110242156	110242157	rs10759240	33539531	Casares-Marfil D	2021-02-04	Clin Infect Dis	A genome-wide association study identifies novel susceptibility loci in chronic Chagas cardiomyopathy.	Chagas cardiomyopathy in Tripanosoma cruzi seropositivity	981 Latin American cases, 1,328 Latin American controls	NA	9q31.2		rs10759240-C	0.54	5E-7		0.92	[0.89-0.95]	Illumina [8218190] (imputed)	N
1426	chr9	110242875	110242876	rs13283908	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	9q31.2		rs13283908-C	NR	3E-8		0.0132	[0.0085-0.0179] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
1426	chr9	110267855	110267856	rs192137842	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-12p70 levels	8,270 Finnish ancestry individuals	NA	9q31.2	NR	rs192137842-G		1E-7		0.4156	[0.26-0.57] SD units increase	NR [10700000] (imputed)	N
1426	chr9	110267855	110267856	rs192137842	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interferon gamma levels	7,701 Finnish ancestry individuals	NA	9q31.2	NR	rs192137842-G		3E-6		0.3683	[0.21-0.52] SD units increase	NR [10700000] (imputed)	N
1426	chr9	110273581	110273582	rs34990336	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	9q31.2		rs34990336-?	NR	6E-9				NR [~ 8900000] (imputed)	N
1426	chr9	110290216	110290217	rs143655302	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 91,972 European ancestry controls	6,852 European ancestry cases, 193,117 European ancestry controls	9q31.2	NR	rs143655302-G	0.980677359	5E-6		1.3767446	[1.20-1.58]	Affymetrix, Illumina [20400945] (imputed)	N
1426	chr9	110290216	110290217	rs143655302	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	9q31.2	NR	rs143655302-G	NR	4E-19		1.304	[1.23-1.38]	Affymetrix, Illumina [29235255] (imputed)	N
1426	chr9	110293748	110293755	rs544893075	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	9q31.2	NR	rs544893075-C	NR	4E-9		0.0145	[0.0096-0.0194] unit increase	Affymetrix [9000000] (imputed)	N
1426	chr9	110293748	110293755	rs544893075	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	9q31.2	NR	rs544893075-C	NR	4E-9		0.0146	[0.0097-0.0195] unit decrease	Affymetrix [9000000] (imputed)	N
1426	chr9	110303808	110303810	rs60037937	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	9q31.2	NR	rs60037937-T	0.2004	1E-26	(EA)	0.0853	[0.07-0.101] unit increase	Illumina [~ 11800000] (imputed)	N
1426	chr9	110306114	110306115	rs10759243	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Breast cancer	10,682 White British ancestry cases, 138,504 White British ancestry controls	NA	9q31.2		rs10759243-?	NR	1E-6		1.07986	[1.05-1.11]	NR [682398]	N
1426	chr9	110306114	110306115	rs10759243	33597508	Coignard J	2021-02-17	Nat Commun	A case-only study to identify genetic modifiers of breast cancer risk for BRCA1/BRCA2 mutation carriers.	BRCA2 mutation in breast cancer	5,097 European ancestry cases, 57,725 European ancestry controls	NA	9q31.2	RP11-438P9.2	rs10759243-A	0.31	5E-6		0.89	NR	Illumina [9043830] (imputed)	N
1426	chr9	110306114	110306115	rs10759243	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	9q31.2		rs10759243-A	NR	3E-21		1.06	[1.05-1.07]	Affymetrix, Illumina [NR] (imputed)	N
1426	chr9	110306114	110306115	rs10759243	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	9q31.2	intergenic	rs10759243-A	0.29	2E-18	(EA)	1.06	[1.04-1.08] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
1426	chr9	110306114	110306115	rs10759243	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	46,785 European ancestry cases, 42,892 European ancestry controls	NA	9q31.2	NR	rs10759243-A	0.29	7E-7		1.05	[1.03-1.08]	Affymetrix, Illumina [~ 14000000] (imputed)	N
1426	chr9	110306114	110306115	rs10759243	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	15,748 European ancestry cases, 18,084 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls	9q31.2	NR	rs10759243-A	0.29	3E-9		1.05	[1.03-1.08]	Affymetrix, Illumina [~ 11600000] (imputed)	N
1426	chr9	110306114	110306115	rs10759243	23535729	Michailidou K	2013-04-01	Nat Genet	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	9q31.2	intergenic	rs10759243-A	0.39	1E-8		1.06	[1.03-1.08]	Affymetrix, Illumina [~ 2600000] (imputed)	N
1427	chr9	110370454	110370455	rs10816540	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	9q31.2	KLF4, LOC100128657	rs10816540-?	0.47	3E-6	(Turkish)	1.5384616	[1.28-1.85]	Illumina [up to 547389]	N
1427	chr9	110383582	110383583	rs1110403	25342443	Lindstrom S	2014-10-24	Nat Commun	Genome-wide association study identifies multiple loci associated with both mammographic density and breast cancer risk.	Percent mammographic density	7,916 European ancestry individuals	343 European ancestry individuals, 1,472 Old Order Amish individuals, 8,564 individuals	9q31.2	intergenic	rs1110403-A	0.58	7E-6				Affymetrix, Illumina [~ 2500000] (imputed)	N
1427	chr9	110394833	110394834	rs73653613	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	9q31.2		rs73653613-G	0.32	1E-12		7.1	z score increase	Affymetrix [9061022] (imputed)	N
1427	chr9	110397106	110397107	rs7864185	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	9q31.2		rs7864185-G	0.31	2E-8		5.66	z score increase	Affymetrix [9061022] (imputed)	N
1427	chr9	110397106	110397107	rs7864185	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	9q31.2	NR	rs7864185-G	0.3049	9E-9				NR [9056863] (imputed)	N
1427	chr9	110397106	110397107	rs7864185	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	9q31.2		rs7864185-?	NR	3E-8				NR [9705931] (imputed)	N
1427	chr9	110416421	110416422	rs79895530	34450027	Boer CG	2021-08-24	Cell	Deciphering osteoarthritis genetics across 826,690 individuals from 9 populations.	Osteoarthritis (with total hip replacement)	23,021 European ancestry cases, 296,016 European ancestry controls	NA	9q31.2		rs79895530-T	0.13	4E-14		0.88285	[0.85475585-0.911867491]	Affymetrix, Illumina [NR] (imputed)	N
1427	chr9	110426834	110426835	rs10118690	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	9q31.2	NR	rs10118690-G	0.2944	6E-10				NR [9056863] (imputed)	N
1427	chr9	110429787	110429788	rs10978984	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric areal bone mineral density (radius)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	9q31.2	NR	rs10978984-T	0.448	3E-6	(Males)	0.259858	[0.15-0.37] unit decrease	Illumina [~ 6600000] (imputed)	N
1427	chr9	110489770	110489771	rs6477592	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia	11,197 European ancestry low myopic cases, 21,416 European ancestry emmetropia controls	NA	9q31.2	NR	rs6477592-?	NR	6E-6		0.0748291	[0.042-0.107] unit increase	NR [13958389] (imputed)	N
1428	chr9	110497950	110497951	rs10759255	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	9q31.2	NR	rs10759255-C	NR	2E-13		0.0191	[0.014-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
1428	chr9	110511407	110511408	rs7042939	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	9q31.2	KLF4	rs7042939-A	0.3982	1E-15		0.0102	[0.0077-0.0127] unit increase	Affymetrix, Illumina [33811881] (imputed)	N
1428	chr9	110516842	110516842	rs144801667	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	9q31.2		rs144801667-TAC	NR	3E-32		0.0299	[0.025-0.035] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
1428	chr9	110517129	110517130	rs1970014	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	20,917 European ancestry cases, 440,906 European ancestry controls, 14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	9q31.2		rs1970014-A	NR	2E-11		0.064	[0.045-0.083] unit decrease	Affymetrix, Illumina [25841367] (imputed)	N
1428	chr9	110517129	110517130	rs1970014	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	9q31.2		rs1970014-A	NR	2E-9		0.0132	[0.0089-0.0175] unit increase	Affymetrix, Illumina [20536605] (imputed)	N
1428	chr9	110517793	110517794	rs944172	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	9q31.2	intergenic	rs944172-T	0.7197	4E-12		0.0395	[0.028-0.051] unit decrease	Affymetrix [at least 7947838] (imputed)	N
1428	chr9	110517793	110517794	rs944172	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	9q31.2	intergenic	rs944172-T	0.7197	1E-11		0.0422	[0.03-0.054] unit decrease	NR [8041861] (imputed)	N
1428	chr9	110526108	110526109	rs2140480	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	9q31.2	intergenic	rs2140480-T	0.281	2E-11		0.047	[0.033-0.061] unit increase	Affymetrix [7947838] (imputed)	N
1428	chr9	110530323	110530324	rs1967604	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	9q31.2	KLF4	rs1967604-A	0.295137	1E-10		1.06	[1.04-1.07]	NR [8126035] (imputed)	N
1428	chr9	110530323	110530324	rs1967604	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	9q31.2	KLF4, ACTL7B	rs1967604-?	NR	1E-13		0.0408244	[0.03-0.052] unit decrease	Illumina [4804024] (imputed)	N
1428	chr9	110530323	110530324	rs1967604	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q31.2	NR	rs1967604-A	0.279052	5E-17				Affymetrix, Illumina [22063850] (imputed)	N
1428	chr9	110530323	110530324	rs1967604	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	9q31.2	NR	rs1967604-A	0.285319	1E-19		0.019011	[0.015-0.023] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
1428	chr9	110530323	110530324	rs1967604	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	9q31.2		rs1967604-?	NR	4E-15				NR [~ 8900000] (imputed)	N
1428	chr9	110531384	110531385	rs10816570	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	9q31.2	NR	rs10816570-A	0.658113	4E-14		0.017971262	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1428	chr9	110531384	110531385	rs10816570	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	9q31.2	NR	rs10816570-A	0.658115	3E-14		0.018044943	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1428	chr9	110531384	110531385	rs10816570	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	9q31.2		rs10816570-A	0.658073	2E-10		0.015023106	[0.01-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1428	chr9	110531384	110531385	rs10816570	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	9q31.2		rs10816570-A	0.658082	1E-10		0.015261147	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1428	chr9	110531495	110531496	rs10759257	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	9q31.2		rs10759257-C	0.658124	2E-14		0.017960284	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1428	chr9	110532521	110532522	rs2140483	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	9q31.2		rs2140483-A	NR	1E-8		0.0116	[0.0077-0.0155] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1428	chr9	110532521	110532522	rs2140483	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	9q31.2		rs2140483-A	0.664525	3E-11		0.015747502	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1428	chr9	110532521	110532522	rs2140483	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	9q31.2		rs2140483-A	0.66434	3E-25		0.02458439	[0.02-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
1428	chr9	110536098	110536099	rs28784969	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q31.2	NR	rs28784969-A	0.0620035	1E-13				Affymetrix, Illumina [21126107] (imputed)	N
1428	chr9	110536098	110536099	rs28784969	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	9q31.2	NR	rs28784969-A	0.054666	2E-14		0.034011	[0.025-0.043] SD unit decrease	Affymetrix, Illumina [50282193] (imputed)	N
1428	chr9	110536931	110536932	rs1467311	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	33,307 East Asian ancestry individuals	NA	9q31.2	KLF4	rs1467311-A	0.7828	3E-6		0.015	[0.0085-0.0215] unit decrease	Affymetrix, Illumina [15728197] (imputed)	N
1428	chr9	110536931	110536932	rs1467311	28898252	Wheeler E	2017-09-12	PLoS Med	Impact of common genetic determinants of Hemoglobin A1c on type 2 diabetes risk and diagnosis in ancestrally diverse populations: A transethnic genome-wide meta-analysis.	Glycated hemoglobin levels	88,355 European ancestry individuals	NA	9q31.2	KLF4	rs1467311-G	0.3508	2E-7		0.0086	[0.0053-0.0119] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1428	chr9	110536931	110536932	rs1467311	28898252	Wheeler E	2017-09-12	PLoS Med	Impact of common genetic determinants of Hemoglobin A1c on type 2 diabetes risk and diagnosis in ancestrally diverse populations: A transethnic genome-wide meta-analysis.	Glycated hemoglobin levels	18,472 East Asian ancestry individuals	NA	9q31.2	KLF4	rs1467311-G	0.2582	1E-7		0.0236	[0.015-0.032] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1428	chr9	110536931	110536932	rs1467311	24647736	Chen P	2014-03-19	Diabetes	Multiple nonglycemic genomic loci are newly associated with blood level of glycated hemoglobin in East Asians.	Glycated hemoglobin levels	17,290 East Asian ancestry individuals, 1,727 Malay ancestry individuals	up to 13,585 East Asian ancestry individuals	9q31.2	intergenic	rs1467311-G	0.23	1E-6		0.04	[0.020-0.060] unit increase	Affymetrix, Illumina [up to 2400000] (imputed)	N
1428	chr9	110546647	110546648	rs75250683	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	9q31.2		rs75250683-T	0.05475	1E-11		0.0338104	[0.024-0.043] unit decrease	Affymetrix [93095623] (imputed)	N
1429	chr9	110663573	110663574	rs10759262	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	9q31.2		rs10759262-A	NR	1E-9		0.0529	[0.036-0.07] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1429	chr9	110669754	110669755	rs2094920	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	9q31.2	RN5S293	rs2094920-C	0.449845	1E-8		0.05208145	[0.034-0.07] unit increase	Affymetrix [7288503] (imputed)	N
1429	chr9	110677123	110677124	rs4978650	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	9q31.2	RNA5SP293	rs4978650-A	NR	1E-8		0.0187139	[0.012-0.025] unit decrease	Affymetrix [323858] (imputed)	N
1429	chr9	110698715	110698716	rs7041168	26237428	Law MH	2015-08-03	Nat Genet	Genome-wide meta-analysis identifies five new susceptibility loci for cutaneous malignant melanoma.	Cutaneous malignant melanoma	12,874 European ancestry cases, 23,203 European ancestry controls	785 European ancestry cases, 791 European ancestry controls, 2,331 cases, 2,415 controls	9q31.2	KLF4	rs7041168-G	0.47	6E-7		0.081	[NR] unit increase	Affymetrix, Illumina [at least 1569314] (imputed)	N
1429	chr9	110709734	110709735	rs10816595	30429480	Duffy DL	2018-11-14	Nat Commun	Novel pleiotropic risk loci for melanoma and nevus density implicate multiple biological pathways.	Nevus count or cutaneous melanoma	52,506 European ancestry individuals, 12,874 European ancestry cases, 23,203 European ancestry controls	NA	9q31.2	intergenic	rs10816595-?	NR	2E-14				Affymetrix, Illumina [7850345] (imputed)	N
1429	chr9	110709734	110709735	rs10816595	30429480	Duffy DL	2018-11-14	Nat Commun	Novel pleiotropic risk loci for melanoma and nevus density implicate multiple biological pathways.	Nevus count	52,506 European ancestry individuals	NA	9q31.2	intergenic	rs10816595-?	NR	1E-8	(fixed effects)			Affymetrix, Illumina [up to 31337615] (imputed)	N
1429	chr9	110711585	110711586	rs1339759	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Nevus count or cutaneous melanoma	36,760 European ancestry cutaneous melanoma cases, 375,188 European ancestry controls, 12,930 European ancestry individuals, 52,847 individuals	NA	9q31.2	RPS15AP27	rs1339759-C	0.665892	3E-25				Affymetrix, Illumina [NR] (imputed)	N
1429	chr9	110711585	110711586	rs1339759	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous malignant melanoma	36,760 European ancestry cases, 375,188 European ancestry controls	NA	9q31.2	RPS15AP27	rs1339759-C	0.6659	6E-19		1.0946	NR	Affymetrix, Illumina [NR] (imputed)	N
1429	chr9	110743291	110743292	rs10124568	29489655	Liu X	2018-03-01	Medicine (Baltimore)	Genome-wide association study of maternal genetic effects and parent-of-origin effects on food allergy.	Egg allergy (maternal genetic effects)	201 European ancestry complete and incomplete trios	NA	9q31.2	LOC105376211	rs10124568-?	NR	9E-6				Illumina [NR]	N
1429	chr9	110746765	110746766	rs28729182	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	9q31.2	KLF4	rs28729182-A	0.889481	2E-10		0.0189539	[0.013-0.025] unit decrease	NR [13737936] (imputed)	N
1429	chr9	110746765	110746766	rs28729182	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	9q31.2		rs28729182-?	NR	2E-13		0.0236555	[0.017-0.03] unit decrease	Affymetrix [20259828] (imputed)	N
1430	chr9	110755975	110755976	rs9969748	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	9q31.2		rs9969748-?	NR	1E-14				NR [~ 8900000] (imputed)	N
1430	chr9	110767316	110767317	rs35827560	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Yeast infection	52,218 European ancestry cases, 10,235 European ancestry controls	NA	9q31.2	NR	rs35827560-?	NR	8E-6		0.0304	[0.017-0.044] unit decrease	Illumina [at least 560000] (imputed)	N
1430	chr9	110773039	110773040	rs60778117	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	9q31.2		rs60778117-T	NR	7E-7		1.081081	[1.05-1.11]	Affymetrix [7846216] (imputed)	N
1430	chr9	110773039	110773040	rs60778117	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Breast cancer	17,881 European ancestry cases, 410,350 European ancestry controls	NA	9q31.2		rs60778117-T	NR	5E-9		1.0863662	NR	Affymetrix [7846216] (imputed)	N
1430	chr9	110788872	110788873	rs35955641	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	9q31.2	NR	rs35955641-?	NR	4E-7				Illumina [at least 7383741] (imputed)	N
1430	chr9	110803858	110803859	rs59310546	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9q31.2	NR	rs59310546-A	0.01568	8E-10	(HBG1)	16.7	NR unit increase	Illumina [1671387] (imputed)	N
1430	chr9	110803858	110803859	rs59310546	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9q31.2	NR	rs59310546-A	0.01568	3E-9	(CA1)	2.913	NR unit increase	Illumina [1671387] (imputed)	N
1430	chr9	110803858	110803859	rs59310546	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9q31.2	NR	rs59310546-A	0.01568	2E-10	(HNRNPH3)	0.09386	NR unit increase	Illumina [1671387] (imputed)	N
1430	chr9	110803858	110803859	rs59310546	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9q31.2	NR	rs59310546-A	0.01568	2E-10	(HBD)	5.45	NR unit increase	Illumina [1671387] (imputed)	N
1430	chr9	110817019	110817020	rs10979182	26626624	Stuart PE	2015-11-28	Am J Hum Genet	Genome-wide Association Analysis of Psoriatic Arthritis and Cutaneous Psoriasis Reveals Differences in Their Genetic Architecture.	Psoriasis vulgaris	4,007 European ancestry cases, 4,934 European ancestry controls	up to 9,075 European ancestry cases, up to European ancestry 12,726 controls	9q31.2	KLF4	rs10979182-A	NR	3E-6		1.106	NR	Illumina [up to 11532644] (imputed)	N
1430	chr9	110817019	110817020	rs10979182	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Psoriasis	4,212 European ancestry cases, 8,032 European ancestry controls	NA	9q31.2	KLF4	rs10979182-A	NR	3E-6		1.149	[1.084-1.218]	Affymetrix, Illumina, Perlegen [up to 5493100] (imputed)	N
1430	chr9	110817019	110817020	rs10979182	23143594	Tsoi LC	2012-12-01	Nat Genet	Identification of 15 new psoriasis susceptibility loci highlights the role of innate immunity.	Psoriasis	10,588 European ancestry cases, 22,806 European ancestry controls	NA	9q31.2	KLF4	rs10979182-A	0.591	2E-8		1.12		Illumina [111236] (imputed)	N
1430	chr9	110837072	110837073	rs10816625	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Breast cancer	10,682 White British ancestry cases, 138,504 White British ancestry controls	NA	9q31.2		rs10816625-?	NR	4E-9		1.17795	[1.12-1.23]	NR [682398]	N
1430	chr9	110837072	110837073	rs10816625	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	9q31.2		rs10816625-A	NR	8E-27		0.9	[0.89-0.92]	Affymetrix, Illumina [NR] (imputed)	N
1430	chr9	110837072	110837073	rs10816625	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	9q31.2	intergenic	rs10816625-G	0.06	5E-18		1.11	[1.07-1.15] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
1430	chr9	110837175	110837176	rs13294895	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	9q31.2		rs13294895-T	NR	7E-17		1.07	[1.05-1.09]	Affymetrix, Illumina [NR] (imputed)	N
1430	chr9	110837175	110837176	rs13294895	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	9q31.2	intergenic	rs13294895-T	0.18	7E-17	(EA)	1.06	[1.03-1.08] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
1430	chr9	110852386	110852387	rs7860288	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	9q31.2	NR	rs7860288-?	NR	5E-7	(AA)	17.57	[16.1-19.04]	Illumina [905956]	N
1430	chr9	110853504	110853505	rs7022762	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	9q31.2	NR	rs7022762-?	NR	5E-7	(AA)	17.57	[16.1-19.04]	Illumina [905956]	N
1430	chr9	110866056	110866057	rs7046999	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	9q31.2	NR	rs7046999-?	NR	1E-6	(AA)	6.15	[4.93-7.37]	Illumina [905956]	N
1430	chr9	110868280	110868281	rs10979209	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	9q31.2	ACTL7B	rs10979209-?	NR	7E-6	(pyruvate)	0.639878	[0.36-0.92] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1430	chr9	110872306	110872307	rs7042864	17903302	Levy D	2007-09-19	BMC Med Genet	Framingham Heart Study 100K Project: genome-wide associations for blood pressure and arterial stiffness.	Tonometry	644 individuals	NA	9q31.2	intergenic	rs7042864-?	NR	6E-6	(CB-PWV)			Affymetrix [70897]	N
1430	chr9	110873779	110873780	rs60634637	25293881	Patel YM	2014-10-07	Cancer Epidemiol Biomarkers Prev	The contribution of common genetic variation to nicotine and cotinine glucuronidation in multiple ethnic/racial populations.	Cotinine glucuronidation	437 European ancestry current smoker individuals, 364 African American current smoker individuals, 453 Latino current smoker individuals, 674 Japanese ancestry current smoker individuals, 311 Native Hawaiian ancestry current smoker individuals	NA	9q31.2	KLF4, ACTL7B	rs60634637-T	NR	2E-8		0.0942	[NR] unit increase	Illumina [11892802] (imputed)	N
1430	chr9	110885478	110885479	rs630965	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	9q31.2	NR	rs630965-T	0.6196	3E-54	(EA)	0.0992	[0.087-0.112] unit increase	Illumina [~ 11800000] (imputed)	N
1431	chr9	110888477	110888478	rs865686	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	46,785 European ancestry cases, 42,892 European ancestry controls	NA	9q31.2	NR	rs865686-T	0.62	4E-27		1.1111112	[1.09-1.14]	Affymetrix, Illumina [~ 14000000] (imputed)	N
1431	chr9	110888477	110888478	rs865686	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	15,748 European ancestry cases, 18,084 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls	9q31.2	NR	rs865686-T	0.62	6E-34		1.1111112	[1.09-1.14]	Affymetrix, Illumina [~ 11600000] (imputed)	N
1431	chr9	110888477	110888478	rs865686	23535729	Michailidou K	2013-04-01	Nat Genet	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	9q31.2	intergenic	rs865686-T	0.62	1E-34		1.12	[1.1-1.14]	Affymetrix, Illumina [~ 2600000] (imputed)	N
1431	chr9	110888477	110888478	rs865686	21263130	Fletcher O	2011-01-24	J Natl Cancer Inst	Novel breast cancer susceptibility locus at 9q31.2: results of a genome-wide association study.	Breast cancer	2,839 European ancestry cases, 3,507 European ancestry controls	9,041 European ancestry cases, 8,980 European ancestry controls	9q31.2	KLF4, ACTL7A, RAD23B	rs865686-T	0.61	2E-10		1.12	[1.09-1.18]	Illumina [~ 296114]	N
1431	chr9	110893551	110893551	rs5899787	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Breast cancer	17,881 European ancestry cases, 410,350 European ancestry controls	NA	9q31.2		rs5899787-CT	NR	3E-16		1.100352	NR	Affymetrix [7846216] (imputed)	N
1431	chr9	110893552	110893552	rs397692178	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Breast cancer	17,389 European ancestry cases, 240,341 European ancestry controls, 6,325 East Asian ancestry cases, 73,225 East Asian ancestry controls	NA	9q31.2		rs397692178-CT	NR	1E-17		0.0998	[0.077-0.123] unit increase	Affymetrix, Illumina [25794640] (imputed)	N
1431	chr9	110895352	110895353	rs676256	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	9q31.2		rs676256-T	NR	3E-53		1.1	[1.09-1.12]	Affymetrix, Illumina [NR] (imputed)	N
1431	chr9	110895352	110895353	rs676256	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	9q31.2	intergenic	rs676256-T	0.62	4E-53	(EA)	1.098901	[1.08-1.11] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
1431	chr9	110911196	110911197	rs28550561	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	9q31.2		rs28550561-?	NR	6E-32		0.0261937	[0.022-0.031] unit increase	Affymetrix [20259828] (imputed)	N
1431	chr9	110911196	110911197	rs28550561	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	9q31.2	KLF4	rs28550561-A	0.703128	6E-8	(men)	0.0305803	[0.02-0.042] unit increase	NR [17166351] (imputed)	N
1431	chr9	110911196	110911197	rs28550561	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	9q31.2	KLF4	rs28550561-A	0.701925	2E-14		0.0272014	[0.02-0.034] unit increase	NR [17166351] (imputed)	N
1431	chr9	110911196	110911197	rs28550561	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	9q31.2	KLF4	rs28550561-A	0.700875	5E-7	(women)	0.0240958	[0.014-0.034] unit increase	NR [17166351] (imputed)	N
1431	chr9	110913153	110913154	rs634454	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	9q31.2	NR	rs634454-G	0.789706	1E-10		0.018403575	[0.013-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1431	chr9	110913153	110913154	rs634454	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	9q31.2	NR	rs634454-G	0.789705	5E-11		0.018732307	[0.013-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1431	chr9	110913153	110913154	rs634454	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	9q31.2		rs634454-G	0.789607	4E-16		0.02304877	[0.017-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1431	chr9	110913153	110913154	rs634454	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	9q31.2		rs634454-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1431	chr9	110920308	110920309	rs7866211	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	9q31.2	KLF4	rs7866211-T	0.700586	3E-28		0.022472	[0.018-0.026] unit increase	NR [13737936] (imputed)	N
1431	chr9	110924214	110924215	rs79206850	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	9q31.2		rs79206850-?	NR	7E-9				NR [~ 8900000] (imputed)	N
1431	chr9	110929604	110929605	rs7027772	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	9q31.2		rs7027772-?	NR	5E-35				NR [~ 8900000] (imputed)	N
1431	chr9	110929604	110929605	rs7027772	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	9q31.2		rs7027772-?	NR	4E-32		0.0265344	[0.022-0.031] unit increase	Affymetrix [20259828] (imputed)	N
1431	chr9	111002171	111002172	rs7847854	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	9q31.2	NR	rs7847854-T	0.6179	5E-18	(EA)	0.055	[0.042-0.068] unit increase	Illumina [~ 11800000] (imputed)	N
1431	chr9	111012839	111012840	rs143220737	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	9q31.2	Intergenic	rs143220737-T	NR	3E-6		0.102851	[0.059-0.146] unit increase	Illumina [13519193] (imputed)	N
1431	chr9	111012839	111012840	rs143220737	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	9q31.2	Intergenic	rs143220737-T	NR	6E-7		0.101313	[0.061-0.141] unit increase	Illumina [13520550] (imputed)	N
1432	chr9	111051625	111051626	rs10117687	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	9q31.2	NR	rs10117687-A	0.31914	1E-8		0.0193449	[0.013-0.026] unit increase	NR [19129689] (imputed)	N
1432	chr9	111060195	111060196	rs77922938	26621817	Cheng TH	2015-12-01	Sci Rep	Meta-analysis of genome-wide association studies identifies common susceptibility polymorphisms for colorectal and endometrial cancer near SH2B3 and TSHZ1.	Colorectal or endometrial cancer	5,725 European ancestry colorectal carcinoma cases, 2,212 European ancestry endometrial carcinoma cases, 13,396 European ancestry controls	4,330 European ancestry endometrial carcinoma cases, 26,849 European ancestry controls	9q31.2	KLF4	rs77922938-?	0.047	8E-6	(opposite direction)	1.1764705	[1.1-1.27]	Illumina [up to 6000000] (imputed)	N
1432	chr9	111072428	111072429	rs10979314	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	9q31.2	NR	rs10979314-?	NR	1E-8	(AA)	347.3	[339.5-355.1]	Illumina [905956]	N
1432	chr9	111119420	111119421	rs4978349	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure	35,269 European ancestry cases, 63,451 European ancestry controls	NA	9q31.2	NR	rs4978349-A	0.150774	9E-7		1.072	[1.04-1.1]	Affymetrix [7791636] (imputed)	N
1432	chr9	111123993	111123994	rs10979330	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	9q31.2	ACTL7B	rs10979330-A	0.754451	4E-12		0.0151906	[0.011-0.019] unit decrease	NR [13737936] (imputed)	N
1432	chr9	111133953	111133954	rs2146778	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	9q31.2		rs2146778-?	NR	2E-19				NR [~ 8900000] (imputed)	N
1433	chr9	111178677	111178678	rs680030	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	9q31.2	ACTL7A	rs680030-?	NR	4E-6	(ornithine)	0.20852086	[0.12-0.3] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1433	chr9	111208975	111208976	rs187723957	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	9q31.2	NR	rs187723957-?	NR	5E-8				Illumina [7760689] (imputed)	N
1433	chr9	111231308	111231309	rs10121673	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9q31.2		rs10121673-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1433	chr9	111231829	111231830	rs12554389	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	9q31.2	NR	rs12554389-?	NR	4E-7				Illumina [at least 7383741] (imputed)	N
1433	chr9	111279438	111279439	rs7022126	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	9q31.3	ACTL7A	rs7022126-?	NR	3E-7	(ornithine)	0.23126408	[0.14-0.32] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1434	chr9	111281693	111281694	rs138837919	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	9q31.3	NR	rs138837919-?	NR	2E-8				Illumina [7760689] (imputed)	N
1434	chr9	111288086	111288087	rs1969796	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	9q31.3	NR	rs1969796-?	NR	7E-16				Affymetrix [NR]	N
1434	chr9	111371122	111371123	rs1999464	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 7)	4,680 European ancestry individuals	3,566 European ancestry individuals	9q31.3		rs1999464-C	0.281008584	2E-34				Illumina [7417619] (imputed)	N
1434	chr9	111373143	111373144	rs117272108	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	9q31.3	NR	rs117272108-?	NR	2E-8				Illumina [7760689] (imputed)	N
1434	chr9	111374283	111374284	rs28452995	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	9q31.3	NR	rs28452995-?	NR	3E-12				Illumina [at least 7383741] (imputed)	N
1434	chr9	111400130	111400131	rs13302880	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	9q31.3		rs13302880-A	0.31	3E-8		5.53	z score increase	Affymetrix [9061022] (imputed)	N
1435	chr9	111418191	111418192	rs55642259	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	9q31.3		rs55642259-?	NR	6E-8				NR [~ 8900000] (imputed)	N
1435	chr9	111455574	111455575	rs10512385	23776197	Leandro-Garcia LJ	2013-06-17	J Med Genet	Genome-wide association study identifies ephrin type A receptors implicated in paclitaxel induced peripheral sensory neuropathy.	Paclitaxel-induced neuropathy	143 European ancestry individuals		9q31.3	ACTL7B	rs10512385-G	0.14	6E-6		2.58	[1.71-3.89]	Illumina [518577]	N
1435	chr9	111460074	111460075	rs10759298	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	9q31.3		rs10759298-?	NR	7E-14				NR [~ 8900000] (imputed)	N
1435	chr9	111460074	111460075	rs10759298	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	9q31.3	NR	rs10759298-T	0.448217	6E-9		0.0184382	[0.012-0.025] unit decrease	NR [19129689] (imputed)	N
1435	chr9	111475819	111475820	rs2095931	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	9q31.3	ACTL7B	rs2095931-A	0.153757	2E-9		0.015789	[0.011-0.021] unit decrease	NR [13737936] (imputed)	N
1435	chr9	111482673	111482674	rs2417930	33649486	Hardcastle AJ	2021-03-01	Commun Biol	A multi-ethnic genome-wide association study implicates collagen matrix integrity and cell differentiation pathways in keratoconus.	Keratoconus	2,116 European ancestry cases, 24,626 European ancestry controls	1, 389 European ancestry cases, 79,727 European ancestry controls, 759 South Asian ancestry cases, 8,009 South Asian ancestry controls, 405 African ancestry cases, 4,185 African ancestry controls	9q31.3	ACTL7B	rs2417930-T	NR	3E-11		0.162	[0.11-0.21] unit increase	Affymetrix [7701190] (imputed)	N
1435	chr9	111483671	111483684	rs66506612	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	9q31.3	NR	rs66506612-?	NR	3E-7				Illumina [at least 7383741] (imputed)	N
1435	chr9	111488127	111488128	rs10124621	32528159	Choquet H	2020-06-11	Commun Biol	A multiethnic genome-wide analysis of 44,039 individuals identifies 41 new loci associated with central corneal thickness.	Central corneal thickness	32,292 European ancestry individuals, 9,623 East Asian ancestry individuals, 1,367 Hispanic/Latino individuals, 757 African American  individuals	NA	9q31.3	ACTL7B	rs10124621-?	NA	2E-9		1.61	[1.08-2.14] unit decrease	Affymetrix [5541230] (imputed)	N
1435	chr9	111523940	111523941	rs1538658	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	9q31.3	ACTL7B	rs1538658-C	0.824043	3E-9		0.0145378	[0.0098-0.0193] unit decrease	NR [13737936] (imputed)	N
1435	chr9	111523940	111523941	rs1538658	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	9q31.3		rs1538658-?	NR	3E-10		0.0184729	[0.013-0.024] unit decrease	Affymetrix [20259828] (imputed)	N
1435	chr9	111526721	111526722	rs62575014	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	9q31.3	NR	rs62575014-A	0.101336	2E-9		0.0310211	[0.021-0.041] unit increase	NR [19129689] (imputed)	N
1435	chr9	111528385	111528386	rs12115640	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	9q31.3		rs12115640-?	NR	7E-13				NR [~ 8900000] (imputed)	N
1435	chr9	111536355	111536356	rs140993796	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	9q31.3	Intergenic	rs140993796-A	0.01	3E-6		0.247	NR unit decrease	Illumina [NR] (imputed)	N
1436	chr9	111555080	111555081	rs7869441	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	9q31.3	NR	rs7869441-?	NR	9E-14				Affymetrix [NR]	N
1436	chr9	111593079	111593080	rs17199679	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Tenofovir clearance in HIV infection	243 European ancestry cases, 149 African American cases, 100 Hispanic American cases, 9 unknown ancestry cases	NA	9q31.3	KLF4, IKBKAP	rs17199679-?		9E-6				Illumina [~ 5190000] (imputed)	N
1436	chr9	111603343	111603344	rs13297186	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs13297186-G	0.318584	1E-9		0.0624626	[0.043-0.082] increase	Affymetrix [11014269] (imputed)	N
1436	chr9	111625628	111625629	rs56031956	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Pursuit maintenance gain in psychotic disorders	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases	NA	9q31.3	ACTL7A	rs56031956-?	NR	4E-7				Illumina [4404269] (imputed)	N
1436	chr9	111625628	111625629	rs56031956	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Pursuit maintenance gain	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	9q31.3	ACTL7A	rs56031956-G	0.02138	1E-7				Illumina [4404269] (imputed)	N
1436	chr9	111637331	111637332	rs1981267	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	9q31.3	NR	rs1981267-G	NR	4E-9		0.0217	[0.014-0.029] unit increase	Affymetrix [9000000] (imputed)	N
1436	chr9	111653079	111653080	rs12353209	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Myringotomy	4,138 European ancestry cases, 85,089 European ancestry controls	NA	9q31.3	NR	rs12353209-?	NR	9E-6		3.7323	[0.5-6.96] unit decrease	Illumina [at least 560000] (imputed)	N
1436	chr9	111662349	111662350	rs1341215	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	9q31.3	ELP1	rs1341215-A	0.1374	6E-17		0.0229	[0.018-0.028] unit increase	Affymetrix [18391927] (imputed)	N
1436	chr9	111662349	111662350	rs1341215	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9q31.3		rs1341215-?	NR	8E-10				NR [~ 8900000] (imputed)	N
1436	chr9	111664177	111664178	rs3818932	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	9q31.3	IKBKAP	rs3818932-?	NR	3E-13		0.022994936	[0.017-0.029] unit decrease	Illumina [27896057] (imputed)	N
1437	chr9	111679939	111679940	rs17853166	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	9q31.3	NR	rs17853166-C	NR	3E-9		0.0478	[0.032-0.063] unit decrease	Affymetrix [9000000] (imputed)	N
1437	chr9	111680358	111680359	rs16913693	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	200,622 European ancestry individuals	NA	9q31.3	IKBKAP	rs16913693-T	0.9669	3E-16		0.0394	[0.03-0.049] unit increase	Affymetrix, Illumina [34064007] (imputed)	N
1437	chr9	111680358	111680359	rs16913693	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting glucose	73,089 European ancestry women	NA	9q31.3	IKBKAP	rs16913693-T	0.946609	3E-7		0.044075	[0.027-0.061] unit increase	Affymetrix, Illumina [8700000] (imputed)	N
1437	chr9	111680358	111680359	rs16913693	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting glucose	67,506 European ancestry men	NA	9q31.3	IKBKAP	rs16913693-T	0.946609	5E-7		0.045235	[0.028-0.063] unit increase	Affymetrix, Illumina [8700000] (imputed)	N
1437	chr9	111680358	111680359	rs16913693	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting glucose	151,188 European ancestry individuals	NA	9q31.3	IKBKAP	rs16913693-T	0.946609	6E-13		0.04376	[0.032-0.056] unit increase	Affymetrix, Illumina [8700000] (imputed)	N
1437	chr9	111680358	111680359	rs16913693	25631608	Wessel J	2015-01-29	Nat Commun	Low-frequency and rare exome chip variants associate with fasting glucose and type 2 diabetes susceptibility.	Fasting blood glucose	50,900 European ancestry non-diabetic individuals, 9,664 African American non-diabetic individuals	NA	9q31.3	IKBKAP	rs16913693-G	0.0261591424111812	5E-6	(EA)	0.04786989	[0.027-0.069] unit decrease	Illumina [197481]	N
1437	chr9	111687583	111687584	rs10979613	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	9q31.3		rs10979613-T	0.6389	1E-15		0.0117	[0.0088-0.0146] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1437	chr9	111688386	111688387	rs11788336	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	9q31.3	IKBKAP	rs11788336-C	0.272606091074292	2E-8	(G_unclassified_P_Firmicutes_RNT)	0.14334	[0.094-0.193] unit decrease	Illumina [7711310] (imputed)	N
1437	chr9	111696388	111696389	rs2275641	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	9q31.3		rs2275641-G	0.643	7E-9		0.007	[0.005-0.009] unit increase	NR [NR] (imputed)	N
1437	chr9	111696388	111696389	rs2275641	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	9q31.3	Intergenic	rs2275641-C	0.353	6E-13	(MTAG)	0.0124	[0.0091-0.0157] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1437	chr9	111696388	111696389	rs2275641	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	9q31.3	Intergenic	rs2275641-C	0.3602	2E-18	(MTAG)	0.012	[0.0093-0.0147] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1437	chr9	111697426	111697427	rs1616727	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	9q31.3	Intergenic	rs1616727-A	0.4125	2E-9		0.0139	[0.0094-0.0184] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1437	chr9	111700975	111700976	rs12335452	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	9q31.3		rs12335452-C	NR	2E-9		0.0485	[0.033-0.064] unit decrease	Affymetrix, Illumina [20535873] (imputed)	N
1437	chr9	111772347	111772348	rs72758394	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	9q31.3	NR	rs72758394-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
1437	chr9	111788557	111788558	rs2184120	29855537	Hirata T	2018-05-31	Sci Rep	Japanese GWAS identifies variants for bust-size, dysmenorrhea, and menstrual fever that are eQTLs for relevant protein-coding or long non-coding RNAs.	Menstruation quality of life impact (bowel movement)	903 Japanese ancestry female cases, 4,831 Japanese ancestry female controls	921 Japanese ancestry female cases, 4,693 Japanese ancestry female controls	9q31.3	NR	rs2184120-C	0.136164303	3E-6		0.23205099	[0.13-0.33] unit increase	Affymetrix [536506]	N
1437	chr9	111799562	111799563	rs643410	23382809	Xu C	2013-01-29	PLoS One	BCL9 and C9orf5 are associated with negative symptoms in schizophrenia: meta-analysis of two genome-wide association studies.	Schizophrenia (negative symptoms)	1,774 European ancestry cases, 2,726 European ancestry controls		9q31.3	C9orf5	rs643410-A	0.05	1E-6		1.6	[NR]	Affymetrix [729454]	N
1437	chr9	111804238	111804239	rs75472294	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	9q31.3		rs75472294-A	0.280287	3E-11		0.0148627	[0.01-0.019] unit decrease	Illumina [13479295] (imputed)	N
1438	chr9	111809294	111809295	rs11792861	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	9q31.3	TMEM245	rs11792861-A	0.7	2E-11		0.04	[0.03-0.05] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
1438	chr9	111813831	111813832	rs57314245	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	9q31.3		rs57314245-?	NR	8E-14				NR [~ 8900000] (imputed)	N
1438	chr9	111820261	111820262	rs7866966	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	9q31.3	TMEM245	rs7866966-C	0.867086	9E-9	(78 ms)	0.0447181	[0.029-0.061] unit increase	Affymetrix [10000000] (imputed)	N
1438	chr9	111820261	111820262	rs7866966	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	9q31.3	TMEM245	rs7866966-C	0.867086	6E-10	(74 ms)	0.0492228	[0.033-0.065] unit increase	Affymetrix [10000000] (imputed)	N
1438	chr9	111820261	111820262	rs7866966	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	9q31.3	TMEM245	rs7866966-C	0.867086	4E-9	(102 ms)	0.0467252	[0.031-0.063] unit increase	Affymetrix [10000000] (imputed)	N
1438	chr9	111820261	111820262	rs7866966	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	9q31.3	TMEM245	rs7866966-C	0.867086	1E-9	(76 ms)	0.047912	[0.032-0.064] unit increase	Affymetrix [10000000] (imputed)	N
1438	chr9	111842193	111842194	rs674178	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	9q31.3	Intergenic	rs674178-A	0.532	2E-8	(MTAG)	0.0101	[0.0066-0.0136] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1438	chr9	111854245	111854246	rs523340	21130836	Luciano M	2010-12-03	Biol Psychol	Whole genome association scan for genetic polymorphisms influencing information processing speed.	Information processing speed	Up to 4,039 European ancestry individuals	NA	9q31.3	C9orf5	rs523340-A	0.10	2E-6	(simple RT)	0.21	[0.13-0.29] unit increase	Illumina [~ 610000]	N
1438	chr9	111875462	111875463	rs2439649	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	9q31.3	NR	rs2439649-G	0.441352	2E-8		0.035272706	[0.023-0.048] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1438	chr9	111875462	111875463	rs2439649	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	9q31.3	Intergenic	rs2439649-A	0.5397	2E-11	(MTAG)	0.0153	[0.011-0.02] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1438	chr9	111875462	111875463	rs2439649	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	9q31.3	Intergenic	rs2439649-A	0.5397	2E-8		0.0161	[0.01-0.022] unit increase	Affymetrix, Illumina [10100000] (imputed)	N
1438	chr9	111875462	111875463	rs2439649	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	9q31.3	NR	rs2439649-?	NR	3E-6		4.647	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1438	chr9	111881396	111881397	rs144251347	28762467	Wadelius M	2017-08-01	Clin Pharmacol Ther	Sulfasalazine-Induced Agranulocytosis Is Associated With the Human Leukocyte Antigen Locus.	Sulfasalazine-induced agranulocytosis	36 European ancestry cases, 5,170 European ancestry untreated controls	NA	9q31.3	TMEM245	rs144251347-?	NR	7E-7		5.1	[2.69-9.70]	Illumina [9380034] (imputed)	N
1438	chr9	111889171	111889172	rs17628095	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	9q31.3		rs17628095-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1438	chr9	111932341	111932342	rs6477694	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	9q31.3	NA	rs6477694-T	0.6415	7E-14		0.0126	[0.0093-0.0159] unit decrease	NR [~ 27400000] (imputed)	N
1438	chr9	111932341	111932342	rs6477694	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	9q31.3	NR	rs6477694-C	NR	2E-10		0.016	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
1438	chr9	111932341	111932342	rs6477694	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	9q31.3	FRRS1L, EPB41L4B	rs6477694-T	0.65	2E-12		0.017	[0.013-0.021] unit decrease	Illumina [6108953] (imputed)	N
1438	chr9	111932341	111932342	rs6477694	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	9q31.3	NR	rs6477694-T	0.632272921963274	5E-12		0.019407246	unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1438	chr9	111932341	111932342	rs6477694	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	9q31.3	EPB41L4B	rs6477694-C	0.371	2E-8		0.017	[0.011-0.023] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1438	chr9	111932341	111932342	rs6477694	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	9q31.3	EPB41L4B	rs6477694-C	0.365	3E-8	(EA)	0.017	[0.011-0.023] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1438	chr9	111932341	111932342	rs6477694	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	9q31.3	EPB41L4B	rs6477694-C	0.364	3E-7	(EA, women)	0.021	[0.013-0.029] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1438	chr9	111932785	111932785	rs34468594	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	9q31.3		rs34468594-CA	NR	2E-17		0.0145	[0.011-0.018] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1438	chr9	111932785	111932785	rs34468594	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	9q31.3		rs34468594-CA	0.384804	8E-9		0.0160142	[0.011-0.021] unit decrease	Illumina [13479924] (imputed)	N
1438	chr9	111932785	111932785	rs34468594	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	9q31.3		rs34468594-CA	NR	6E-12		0.0135	[0.0096-0.0174] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1439	chr9	111936127	111936128	rs7858727	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	9q31.3	NR	rs7858727-C	0.2233	8E-10		0.0344	[0.023-0.045] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1439	chr9	111938267	111938268	rs10119430	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	9q31.3	NR	rs10119430-G	0.2209	2E-9		0.0279	[0.019-0.037] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1439	chr9	111945048	111945049	rs3750450	26486471	van Loon J	2015-10-21	Eur J Hum Genet	Genome-wide association studies identify genetic loci for low von Willebrand factor levels.	Low vWF levels	up to 1,635 European ancestry individuals with low vWF levels, up to 33,286 European ancestry individuals with normal vWF levels	NA	9q31.3	EPB41L4B	rs3750450-?	NR	1E-6				Affymetrix, Illumina [~ 2600000] (imputed)	N
1439	chr9	111950087	111950088	rs10116353	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	9q31.3	NR	rs10116353-T	0.305	3E-14		0.014	[0.01-0.018] unit decrease	NR [~ 27400000] (imputed)	N
1439	chr9	111958745	111958746	rs2417998	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		9q31.3	EPB41L4B	rs2417998-C	0.291576	3E-8		0.00841353	[0.0054-0.0114] unit increase	Affymetrix [12370749]	N
1439	chr9	111958952	111958953	rs10816784	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	9q31.3	Intergenic	rs10816784-A	0.3837	2E-8	(MTAG)	0.0076	[0.0051-0.0101] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1439	chr9	111963640	111963641	rs7021721	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	9q31.3	NR	rs7021721-?	NR	4E-11				Affymetrix [~ 8270000] (imputed)	N
1439	chr9	111963640	111963641	rs7021721	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	9q31.3	NR	rs7021721-?	NR	6E-10				Affymetrix [~ 8270000] (imputed)	N
1439	chr9	111963640	111963641	rs7021721	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	9q31.3		rs7021721-?	NR	9E-11				NR [~ 8900000] (imputed)	N
1439	chr9	111972670	111972671	rs12684047	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	9q31.3	NR	rs12684047-T	0.81	1E-10		0.016	[0.011-0.021] unit increase	Affymetrix [2446094] (imputed)	N
1439	chr9	111972670	111972671	rs12684047	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	9q31.3	NR	rs12684047-T	0.81	5E-8				Affymetrix [2446094] (imputed)	N
1439	chr9	111972670	111972671	rs12684047	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	9q31.3	NA	rs12684047-A	0.1914	3E-15		0.0185	[0.014-0.023] unit decrease	NR [~ 27400000] (imputed)	N
1439	chr9	111972670	111972671	rs12684047	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	316,772 European ancestry male individuals	NA	9q31.3	NR	rs12684047-A	0.1914	3E-15		0.0185	[0.014-0.023] unit decrease	NR [~ 27400000] (imputed)	N
1439	chr9	111980233	111980234	rs4483229	31005965	Coltell O	2019-04-21	Am J Clin Nutr	Association between taste perception and adiposity in overweight or obese older subjects with metabolic syndrome and identification of novel taste-related genes.	Umami taste perception in obesity with metabolic syndrome	378 individuals	NA	9q31.3	EPB41L4B	rs4483229-A	0.197	6E-6		0.675	[0.39-0.96] unit decrease	Illumina [622468]	N
1439	chr9	111994721	111994722	rs3849111	33445220	Li Y	2021-01-14	Am J Transplant	Donor genetic variants as risk factors for thrombosis after liver transplantation: A genome-wide association study.	Thrombosis in response to liver transplant	42 European ancestry pediatric cases, 268 European ancestry pediatric controls	64 European ancestry adult cases, 711 European ancestry adult controls	9q31.3	NR	rs3849111-A	0.3717	7E-6		0.4318	NR	Illumina [5393447] (imputed)	N
1439	chr9	112021584	112021585	rs750723	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	9q31.3	NR	rs750723-?	NR	2E-6	(AA)	120.26	[110.77-129.75]	Illumina [905956]	N
1440	chr9	112077529	112077530	rs68082079	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	9q31.3		rs68082079-C	NR	8E-12		0.0142	[0.01-0.018] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
1440	chr9	112077529	112077530	rs68082079	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	9q31.3	EPB41L4B	rs68082079-T	0.706854	7E-11		0.00281677	[0.002-0.0037] unit increase	Affymetrix [13995440] (imputed)	N
1440	chr9	112077529	112077530	rs68082079	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	9q31.3	EPB41L4B	rs68082079-T	0.71	1E-10		6.47	z-score increase	Affymetrix [4312306] (imputed)	N
1440	chr9	112077529	112077530	rs68082079	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	9q31.3	NR	rs68082079-C	NR	3E-10		0.0171	[0.012-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
1440	chr9	112097995	112097996	rs7032912	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Degraded stimulus continuous performance test score	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	9q31.3	EPB41L4B	rs7032912-C	NR	5E-6		0.32136843	[0.18-0.46] unit increase	Illumina [> 6200000] (imputed)	N
1440	chr9	112103797	112103798	rs7863010	28447399	Jia P	2017-04-26	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of HIV-associated neurocognitive disorder (HAND): A CHARTER group study.	HIV-associated neurocognitive disorder	192 African American cases, 213 European ancestry cases, 70 Hispanic cases, 6 unknown ancestry cases, 297 African American controls, 230 European ancestry controls, 29 Hispanic controls, 11 controls	NA	9q31.3	NR	rs7863010-C		1E-6		2.247191	[NR]	Affymetrix [NR]	N
1440	chr9	112105330	112105331	rs7852279	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	9q31.3	NR	rs7852279-T	NR	2E-12		0.019	[0.014-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
1440	chr9	112108333	112108334	rs12115792	34469433	Ashvetiya T	2021-09-01	PLoS One	Identification of novel genetic susceptibility loci for thoracic and abdominal aortic aneurysms via genome-wide association study using the UK Biobank Cohort.	Thoracic aortic aneurysms	435 European, Indian, Caribbean, African ancestry cases, 8,700 European, Indian, Caribbean, African ancestry ancestry controls	NA	9q31.3		rs12115792-?	NR	7E-7		1.59618		NR [NR] (imputed)	N
1440	chr9	112110727	112110728	rs7019068	28447399	Jia P	2017-04-26	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of HIV-associated neurocognitive disorder (HAND): A CHARTER group study.	HIV-associated neurocognitive disorder (mild neurocognitive disorder or asymptomatic neurocognitive impairment)	155 African American asymptomatic neurocognitive impairment cases, 150 European ancestry asymptomatic neurocognitive impairment cases, 49 Hispanic asymptomatic neurocognitive impairment cases, 5 asymptomatic neurocognitive impairment cases, 30 African American mild neurocognitive disorder cases, 45 European ancestry mild neurocognitive disorder cases, 17 Hispanic mild neurocognitive disorder cases, 297 African American controls,  230 European ancestry controls, 29 Hispanic controls, 11 controls	NA	9q31.3	NR	rs7019068-C		4E-6		2.1645021	[NR]	Affymetrix [NR]	N
1440	chr9	112128997	112128998	rs114356520	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	9q31.3	intergenic	rs114356520-A	0.001	1E-6		33.99	[3.51-328.89]	Illumina [1556551]	N
1440	chr9	112129774	112129775	rs138799235	26569114	Brown EL	2015-11-16	PLoS One	Genome-Wide Association Study of Staphylococcus aureus Carriage in a Community-Based Sample of Mexican-Americans in Starr County, Texas.	Staphylococcus aureus nasal carriage (persistent)	141 Mexican American persistent carrier individuals, 620 Mexican American non-carrier individuals	NA	9q31.3	EPB41L4B, PTPN3	rs138799235-C	0.09	8E-7		3.0	[1.94-4.63]	Affymetrix, Illumina [at least 603042] (imputed)	N
1440	chr9	112139738	112139739	rs191660985	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (90 or 130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	9q31.3	PTPN3	rs191660985-?	NR	7E-6		0.248	[0.12-0.37] unit increase	Illumina [at least 13000000] (imputed)	N
1440	chr9	112139738	112139739	rs191660985	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	9q31.3	PTPN3	rs191660985-?	NR	9E-6		0.267	[0.13-0.4] unit increase	Illumina [at least 13000000] (imputed)	N
1440	chr9	112154158	112154159	rs113401313	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	CTACK levels	3,631 Finnish ancestry individuals	NA	9q31.3	NR	rs113401313-G	NR	1E-6		0.1968	[0.12-0.28] SD units decrease	NR [10700000] (imputed)	N
1440	chr9	112170701	112170701	rs35463120	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris color (b* coordinate)	329 South Asian ancestry individuals		9q31.3	PTPN3	rs35463120-TAAAC	0.913	9E-7		0.718	[0.44-1] unit increase	Illumina [640625] (imputed)	N
1440	chr9	112170701	112170701	rs35463120	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris color (a* coordinate)	329 South Asian ancestry individuals		9q31.3	PTPN3	rs35463120-TAAAC	0.913141	9E-6		0.650863	[0.37-0.93] unit increase	Illumina [640625] (imputed)	N
1440	chr9	112177504	112177505	rs7030930	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	9q31.3	PTPN3	rs7030930-C	0.181475	9E-9	(158 ms)	0.0393736	[0.025-0.053] unit increase	Affymetrix [10000000] (imputed)	N
1440	chr9	112177504	112177505	rs7030930	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	9q31.3	PTPN3	rs7030930-C	0.181475	8E-10	(186 ms)	0.0438824	[0.03-0.058] unit increase	Affymetrix [10000000] (imputed)	N
1440	chr9	112177504	112177505	rs7030930	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	9q31.3	PTPN3	rs7030930-C	0.181475	7E-9	(192 ms)	0.0426953	[0.029-0.057] unit increase	Affymetrix [10000000] (imputed)	N
1440	chr9	112177504	112177505	rs7030930	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	9q31.3	PTPN3	rs7030930-C	0.181475	6E-9	(204 ms)	0.0426457	[0.029-0.057] unit increase	Affymetrix [10000000] (imputed)	N
1440	chr9	112177504	112177505	rs7030930	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	9q31.3	PTPN3	rs7030930-C	0.181475	6E-9	(166 ms)	0.0411869	[0.027-0.055] unit increase	Affymetrix [10000000] (imputed)	N
1440	chr9	112177504	112177505	rs7030930	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	9q31.3	PTPN3	rs7030930-C	0.181475	6E-10	(182 ms)	0.0445225	[0.03-0.059] unit increase	Affymetrix [10000000] (imputed)	N
1440	chr9	112177504	112177505	rs7030930	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	9q31.3	PTPN3	rs7030930-C	0.181475	5E-8	(212 ms)	0.0405868	[0.027-0.055] unit increase	Affymetrix [10000000] (imputed)	N
1440	chr9	112177504	112177505	rs7030930	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	9q31.3	PTPN3	rs7030930-C	0.181475	5E-8	(164 ms)	0.0386512	[0.025-0.053] unit increase	Affymetrix [10000000] (imputed)	N
1440	chr9	112177504	112177505	rs7030930	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	9q31.3	PTPN3	rs7030930-C	0.181475	4E-9	(178 ms)	0.04267	[0.029-0.057] unit increase	Affymetrix [10000000] (imputed)	N
1440	chr9	112177504	112177505	rs7030930	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	9q31.3	PTPN3	rs7030930-C	0.181475	4E-9	(174 ms)	0.0423606	[0.028-0.056] unit increase	Affymetrix [10000000] (imputed)	N
1440	chr9	112177504	112177505	rs7030930	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	9q31.3	PTPN3	rs7030930-C	0.181475	4E-8	(200 ms)	0.0402532	[0.026-0.054] unit increase	Affymetrix [10000000] (imputed)	N
1440	chr9	112177504	112177505	rs7030930	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	9q31.3	PTPN3	rs7030930-C	0.181475	4E-8	(176 ms)	0.0400621	[0.026-0.054] unit increase	Affymetrix [10000000] (imputed)	N
1440	chr9	112177504	112177505	rs7030930	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	9q31.3	PTPN3	rs7030930-C	0.181475	4E-10	(188 ms)	0.0446582	[0.031-0.059] unit increase	Affymetrix [10000000] (imputed)	N
1440	chr9	112177504	112177505	rs7030930	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	9q31.3	PTPN3	rs7030930-C	0.181475	4E-10	(180 ms)	0.0453191	[0.031-0.059] unit increase	Affymetrix [10000000] (imputed)	N
1440	chr9	112177504	112177505	rs7030930	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	9q31.3	PTPN3	rs7030930-C	0.181475	3E-8	(210 ms)	0.0406147	[0.027-0.055] unit increase	Affymetrix [10000000] (imputed)	N
1440	chr9	112177504	112177505	rs7030930	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	9q31.3	PTPN3	rs7030930-C	0.181475	3E-8	(198 ms)	0.0402944	[0.026-0.054] unit increase	Affymetrix [10000000] (imputed)	N
1440	chr9	112177504	112177505	rs7030930	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	9q31.3	PTPN3	rs7030930-C	0.181475	3E-8	(144 ms)	0.0388884	[0.025-0.053] unit increase	Affymetrix [10000000] (imputed)	N
1440	chr9	112177504	112177505	rs7030930	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	9q31.3	PTPN3	rs7030930-C	0.181475	2E-8	(208 ms)	0.0409397	[0.027-0.055] unit increase	Affymetrix [10000000] (imputed)	N
1440	chr9	112177504	112177505	rs7030930	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	9q31.3	PTPN3	rs7030930-C	0.181475	2E-8	(206 ms)	0.0418079	[0.028-0.056] unit increase	Affymetrix [10000000] (imputed)	N
1440	chr9	112177504	112177505	rs7030930	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	9q31.3	PTPN3	rs7030930-C	0.181475	2E-8	(202 ms)	0.0413342	[0.027-0.055] unit increase	Affymetrix [10000000] (imputed)	N
1440	chr9	112177504	112177505	rs7030930	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	9q31.3	PTPN3	rs7030930-C	0.181475	2E-8	(196 ms)	0.0406965	[0.027-0.055] unit increase	Affymetrix [10000000] (imputed)	N
1440	chr9	112177504	112177505	rs7030930	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	9q31.3	PTPN3	rs7030930-C	0.181475	1E-9	(190 ms)	0.0444433	[0.03-0.059] unit increase	Affymetrix [10000000] (imputed)	N
1440	chr9	112177504	112177505	rs7030930	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	9q31.3	PTPN3	rs7030930-C	0.181475	1E-9	(184 ms)	0.0431162	[0.029-0.057] unit increase	Affymetrix [10000000] (imputed)	N
1440	chr9	112177504	112177505	rs7030930	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	9q31.3	PTPN3	rs7030930-C	0.181475	1E-8	(194 ms)	0.0415243	[0.027-0.056] unit increase	Affymetrix [10000000] (imputed)	N
1440	chr9	112181616	112181617	rs146893001	28552477	Ilboudo Y	2017-05-13	Blood Cells Mol Dis	Genome-wide association study of erythrocyte density in sickle cell disease patients.	Red blood cell density in sickle cell anemia	374 cases	NA	9q31.3	PTPN3	rs146893001-C	0.01	1E-6		2.04	[1.26-2.82] unit decrease	Illumina [~ 31000000] (imputed)	N
1441	chr9	112204027	112204028	rs35795166	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	9q31.3		rs35795166-C	NR	1E-10		0.017	[0.012-0.022] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
1441	chr9	112206403	112206404	rs10816812	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	9q31.3	PTPN3	rs10816812-T	0.6295	1E-8		5.731	NR z score increase	Illumina [26237160] (imputed)	N
1441	chr9	112215874	112215875	rs3793526	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	120,539 East Asian ancestry individuals	NA	9q31.3		rs3793526-T	0.324629	6E-10		0.024951	[0.017-0.033] unit decrease	Illumina [13474682] (imputed)	N
1441	chr9	112219473	112219474	rs3793524	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	9q31.3		rs3793524-G	NR	1E-17		0.0166	[0.013-0.02] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
1441	chr9	112223083	112223084	rs12006266	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	9q31.3		rs12006266-C	NR	1E-17		0.0182	[0.014-0.022] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
1441	chr9	112225831	112225832	rs3808877	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	9q31.3		rs3808877-G	NR	5E-13		0.0121	[0.0088-0.0154] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
1441	chr9	112230897	112230898	rs111960097	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum albumin levels	102,223 Japanese ancestry individuals	NA	9q31.3	PTPN3	rs111960097-?	NR	2E-9		0.03155	[0.021-0.042] unit decrease	Illumina [6108953] (imputed)	N
1441	chr9	112241135	112241136	rs77824033	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	9q31.3	PTPN3	rs77824033-T	0.962981	1E-8		0.0302102	[0.02-0.041] unit increase	Affymetrix [NR] (imputed)	N
1441	chr9	112241292	112241293	rs55824262	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	9q31.3	NR	rs55824262-T	0.707674	2E-8		0.0125164	[0.0082-0.0169] unit increase	NR [NR]	N
1441	chr9	112251562	112251563	rs4978813	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	9q31.3	NR	rs4978813-?	NR	4E-7		0.0608	[0.037-0.084] unit increase	Illumina [at least 560000] (imputed)	N
1441	chr9	112272228	112272229	rs4978818	28447399	Jia P	2017-04-26	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of HIV-associated neurocognitive disorder (HAND): A CHARTER group study.	HIV-associated neurocognitive disorder (mild neurocognitive disorder or asymptomatic neurocognitive impairment)	155 African American asymptomatic neurocognitive impairment cases, 150 European ancestry asymptomatic neurocognitive impairment cases, 49 Hispanic asymptomatic neurocognitive impairment cases, 5 asymptomatic neurocognitive impairment cases, 30 African American mild neurocognitive disorder cases, 45 European ancestry mild neurocognitive disorder cases, 17 Hispanic mild neurocognitive disorder cases, 297 African American controls,  230 European ancestry controls, 29 Hispanic controls, 11 controls	NA	9q31.3	PTPN3	rs4978818-C		2E-7		2.132196	[NR]	Affymetrix [NR]	N
1441	chr9	112272228	112272229	rs4978818	28447399	Jia P	2017-04-26	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of HIV-associated neurocognitive disorder (HAND): A CHARTER group study.	HIV-associated neurocognitive disorder (asymptomatic neurocogntive impairment)	155 African American cases, 150 European ancestry cases, 49 Hispanic cases, 5 cases, 297 African American controls, 230 European ancestry controls, 29 Hispanic controls, 11 controls	NA	9q31.3	PTPN3	rs4978818-C		5E-6		2.0242915	[NR]	Affymetrix [NR]	N
1441	chr9	112272228	112272229	rs4978818	28447399	Jia P	2017-04-26	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of HIV-associated neurocognitive disorder (HAND): A CHARTER group study.	HIV-associated neurocognitive disorder	192 African American cases, 213 European ancestry cases, 70 Hispanic cases, 6 unknown ancestry cases, 297 African American controls, 230 European ancestry controls, 29 Hispanic controls, 11 controls	NA	9q31.3	PTPN3	rs4978818-C		1E-7		2.132196	[NR]	Affymetrix [NR]	N
1441	chr9	112294765	112294766	rs1999269	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	9q31.3		rs1999269-T	NR	6E-12		0.0145	[0.01-0.019] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1441	chr9	112299321	112299322	rs7048146	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Vascular brain injury	up to 2,940 individuals	NA	9q31.3	intergenic	rs7048146-T	0.3898	6E-6		0.2753	[0.16-0.39] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1441	chr9	112299321	112299322	rs7048146	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Vascular brain injury	up to 2,940 individuals	NA	9q31.3	intergenic	rs7048146-T	0.3891	6E-7	(Ordinal)	0.2933	[0.18-0.41] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1441	chr9	112325050	112325051	rs7858161	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	9q31.3	YBX1P6	rs7858161-A	NR	4E-8		0.0170714	[0.011-0.023] unit increase	Affymetrix [321016] (imputed)	N
1441	chr9	112327313	112327314	rs75001090	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cholelithiasis	9,305 East Asian ancestry cases, 168,253 East Asian ancestry controls	NA	9q31.3		rs75001090-C	0.206847951	3E-8		0.10632898	[0.069-0.144] unit decrease	Illumina [13429768] (imputed)	N
1442	chr9	112331615	112331616	rs7029639	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	9q31.3		rs7029639-A	NR	6E-11		0.0183	[0.013-0.024] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
1442	chr9	112355891	112355892	rs7034315	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	9q31.3		rs7034315-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1442	chr9	112355903	112355904	rs74701429	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	9q31.3	NR	rs74701429-?	NR	3E-6		0.1565	[0.09-0.223] unit increase	Illumina [at least 560000] (imputed)	N
1442	chr9	112358149	112358150	rs7043304	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	NA	9q31.3	MIR3927	rs7043304-C	0.1452	2E-12		0.176	[0.13-0.22] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1442	chr9	112412990	112412990	rs564904625	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	9q31.3	PALM2	rs564904625-G	0.9987	9E-6		0.6575	[0.37-0.95] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1442	chr9	112421434	112421435	rs10816848	29724592	Pottier C	2018-04-30	Lancet Neurol	Potential genetic modifiers of disease risk and age at onset in patients with frontotemporal lobar degeneration and GRN mutations: a genome-wide association study.	Frontotemporal dementia with GRN mutation	382 European ancestry cases, 1,146 European ancestry controls	67 European ancestry cases, 1,798 European ancestry controls	9q31.3	PALM2	rs10816848-T	0.51	5E-6		1.4285715	[1.22-1.67]	Illumina [7033776] (imputed)	N
1442	chr9	112421434	112421435	rs10816848	29724592	Pottier C	2018-04-30	Lancet Neurol	Potential genetic modifiers of disease risk and age at onset in patients with frontotemporal lobar degeneration and GRN mutations: a genome-wide association study.	Frontotemporal dementia	382 European ancestry GRN mutation carrier cases, 1,146 European ancestry controls	67 GRN mutation carrier European ancestry cases, 143 GRN-negative European ancestry cases, 1,798 European ancestry controls	9q31.3	PALM2	rs10816848-T	0.51	6E-6		1.4492754	[1.18-1.54]	Illumina [7033776] (imputed)	N
1443	chr9	112467997	112467998	rs186915809	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	9q31.3	PALM2	rs186915809-A	1.0	3E-6	(AA)	1.227	unit increase	Illumina [NR] (imputed)	N
1443	chr9	112474337	112474338	rs1322278	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9q31.3		rs1322278-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1443	chr9	112521125	112521126	rs4978848	24684796	Cox AJ	2014-03-11	Neurobiol Aging	Heritability and genetic association analysis of cognition in the Diabetes Heart Study.	Cognitive function	423 type 2 diabetes cases and 127 unaffected siblings from 257 families	NA	9q31.3	PALM2	rs4978848-G	0.495	3E-6	(DSST)	3.6321	[2.12-5.15] unit decrease	Affymetrix [> 371951] (imputed)	N
1443	chr9	112526288	112526289	rs1327796	22456796	Imamura M	2012-03-28	Hum Mol Genet	A single-nucleotide polymorphism in ANK1 is associated with susceptibility to type 2 diabetes in Japanese populations.	Type 2 diabetes	4,470 Japanese ancestry cases, 3,071 Japanese ancestry controls	7,605 Japanese ancestry cases, 3,534 Japanese ancestry controls	9q31.3	PALM2, AKAP2	rs1327796-?	0.235	3E-6		1.13	[1.08-1.20]	NR [2229890] (imputed)	N
1443	chr9	112534855	112534856	rs1327793	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	9q31.3	PALM2	rs1327793-G	NR	1E-9		0.01761	[0.012-0.023] unit decrease	Affymetrix [319769] (imputed)	N
1443	chr9	112534855	112534856	rs1327793	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	9q31.3	PALM2	rs1327793-G	NR	8E-10		0.017719	[0.012-0.023] unit decrease	Affymetrix [319769] (imputed)	N
1443	chr9	112534855	112534856	rs1327793	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	9q31.3	PALM2	rs1327793-G	NR	1E-8		0.0171049	[0.011-0.023] unit increase	Affymetrix [321788] (imputed)	N
1443	chr9	112544023	112544024	rs10980037	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	9q31.3	PALM2	rs10980037-?		4E-9				Affymetrix, Illumina [NR] (imputed)	N
1443	chr9	112551866	112551867	rs913359	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	9q31.3	PALM2, PALM2-AKAP2, AKAP2	rs913359-G	NR	3E-12		0.0245786	[0.018-0.031] unit decrease	Affymetrix [321788] (imputed)	N
1443	chr9	112551866	112551867	rs913359	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	9q31.3	PALM2, PALM2-AKAP2, AKAP2	rs913359-G	NR	4E-8		0.0185411	[0.012-0.025] unit decrease	Affymetrix [321016] (imputed)	N
1443	chr9	112561011	112561012	rs2209815	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	9q31.3		rs2209815-T	NR	6E-10		0.0126	[0.0087-0.0165] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
1443	chr9	112565495	112565496	rs7048452	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	9q31.3	PALM2, PALM2-AKAP2, AKAP2	rs7048452-C	NR	3E-8		0.0156192	[0.01-0.021] unit decrease	Affymetrix [321016] (imputed)	N
1443	chr9	112570895	112570896	rs10980055	31289819	Fitzgerald KC	2019-09-01	Brain	Early complement genes are associated with visual system degeneration in multiple sclerosis.	Decreased low contrast letter acuity in multiple sclerosis	582 European and unknown ancestry individuals	253 European and unknown ancestry individuals	9q31.3	PALM2-AKAP, AKAP, PALM2	rs10980055-G	0.15	3E-6		1.76	[1.48-2.10]	Illumina [5258576] (imputed)	N
1443	chr9	112575624	112575625	rs10980061	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	9q31.3	PALM2, PALM2-AKAP2, AKAP2	rs10980061-T	NR	6E-11		0.0191748	[0.013-0.025] unit decrease	Affymetrix [321788] (imputed)	N
1443	chr9	112575691	112575692	rs117435644	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	9q31.3	PALM2	rs117435644-G	0.76159	3E-8		0.0123936	[0.008-0.0168] unit decrease	Affymetrix [NR] (imputed)	N
1443	chr9	112581046	112581047	rs10980068	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia	11,197 European ancestry low myopic cases, 21,416 European ancestry emmetropia controls	NA	9q31.3	NR	rs10980068-?	NR	2E-6		0.112194	[0.066-0.158] unit increase	NR [13958389] (imputed)	N
1443	chr9	112583553	112583554	rs7020604	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	9q31.3	NR	rs7020604-?	NR	5E-10				Affymetrix [~ 8270000] (imputed)	N
1443	chr9	112583553	112583554	rs7020604	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	9q31.3		rs7020604-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1443	chr9	112583553	112583554	rs7020604	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	9q31.3	NR	rs7020604-A	0.6653	7E-10		0.0129	[0.0088-0.017] unit increase	NR [~ 27400000] (imputed)	N
1443	chr9	112583553	112583554	rs7020604	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	9q31.3	NR	rs7020604-A	0.6653	1E-7		0.011	[0.0069-0.0151] unit increase	NR [~ 27400000] (imputed)	N
1444	chr9	112596910	112596911	rs2025875	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	9q31.3	PALM2AKAP2	rs2025875-G	0.157	8E-6	(TC )	0.03	[NR] mg/dL increase	Illumina [899892]	N
1444	chr9	112620915	112620916	rs77681520	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Monocyte chemoattractant protein-1 levels	8,293 Finnish ancestry individuals	NA	9q31.3	NR	rs77681520-C		5E-6		0.4685	[0.27-0.67] SD units increase	NR [10700000] (imputed)	N
1444	chr9	112678120	112678121	rs7855586	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	9q31.3	NR	rs7855586-G	0.290115	1E-12		0.014877	[0.011-0.019] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1444	chr9	112695255	112695256	rs140508424	33607655	Imamura M	2021-02-19	Hum Mol Genet	Genome-Wide Association Studies Identify Two Novel Loci Conferring Susceptibility to Diabetic Retinopathy in Japanese Patients with Type 2 Diabetes.	Diabetic retinopathy in type 2 diabetes	5,532 Japanese ancestry cases, 5,565 Japanese ancestry controls	3,010 Japanese ancestry cases, 1,562 Japanese ancestry controls	9q31.3	PALM2	rs140508424-C	0.985	3E-7		1.53	[1.30-1.81]	Illumina [5790508] (imputed)	N
1445	chr9	112722329	112722330	rs72754914	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	9q31.3		rs72754914-?	NR	1E-16				NR [~ 8900000] (imputed)	N
1445	chr9	112723790	112723793	rs71961113	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	9q31.3	PALM2-AKAP2, AKAP2	rs71961113-T	0.190732	2E-14		0.021941515	[0.016-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1445	chr9	112723790	112723793	rs71961113	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	9q31.3	PALM2-AKAP2, AKAP2	rs71961113-T	0.190739	9E-12		0.019504309	[0.014-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1445	chr9	112723790	112723793	rs71961113	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	9q31.3	PALM2-AKAP2, AKAP2	rs71961113-T	0.19069	5E-21		0.026783986	[0.021-0.032] unit increase	Affymetrix [93095623] (imputed)	N
1445	chr9	112723790	112723793	rs71961113	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	9q31.3	PALM2-AKAP2, AKAP2	rs71961113-T	0.190691	6E-19		0.025355404	[0.02-0.031] unit increase	Affymetrix [93095623] (imputed)	N
1445	chr9	112728013	112728014	rs6477734	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q31.3	NR	rs6477734-C	0.429495	6E-12				Affymetrix, Illumina [23472807] (imputed)	N
1445	chr9	112731698	112731699	rs72754919	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q31.3	NR	rs72754919-T	0.169513	6E-10				Affymetrix, Illumina [23114412] (imputed)	N
1445	chr9	112735584	112735585	rs4978866	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q31.3	NR	rs4978866-C	0.170495	1E-16				Affymetrix, Illumina [23467995] (imputed)	N
1445	chr9	112735584	112735585	rs4978866	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	9q31.3	NR	rs4978866-C	0.160139	1E-16		0.021105	[0.016-0.026] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
1445	chr9	112738297	112738298	rs12683699	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	9q31.3	NR	rs12683699-G	0.160286	5E-18		0.021786	[0.017-0.027] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
1445	chr9	112741087	112741087	rs74745018	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	9q31.3	PALM2-AKAP2, AKAP2	rs74745018-TA	0.167852	4E-14		0.022666955	[0.017-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1445	chr9	112744600	112744601	rs4978410	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q31.3	NR	rs4978410-T	0.174088	7E-19				Affymetrix, Illumina [24649327] (imputed)	N
1445	chr9	112745174	112745175	rs117468663	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	9q31.3	NR	rs117468663-T	0.133922	9E-12		0.019488	[0.014-0.025] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
1445	chr9	112745175	112745176	rs116852611	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	9q31.3		rs116852611-T	NR	8E-16		0.0234	[0.018-0.029] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
1445	chr9	112745175	112745176	rs116852611	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	9q31.3		rs116852611-T	NR	3E-9		0.0187	[0.012-0.025] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
1445	chr9	112745177	112745178	rs118017491	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	9q31.3	PALM2-AKAP2, AKAP2	rs118017491-T	0.134618	5E-10		0.020598186	[0.014-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1445	chr9	112747936	112747936	rs568197028	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	9q31.3		rs568197028-CT	NR	1E-10		0.0204	[0.014-0.027] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
1445	chr9	112747936	112747936	rs568197028	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	9q31.3	PALM2-AKAP2, AKAP2	rs568197028-CT	0.187723	3E-13		0.021626877	[0.016-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1445	chr9	112760097	112760098	rs72754938	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	9q31.3	NR	rs72754938-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
1445	chr9	112760887	112760888	rs10816914	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	9q31.3		rs10816914-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1445	chr9	112762433	112762434	rs150841499	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	9q31.3	NR	rs150841499-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
1445	chr9	112790035	112790036	rs7024673	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	9q31.3	PALM2-AKAP2, AKAP2	rs7024673-T	0.313257	6E-12		0.016731614	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1445	chr9	112798087	112798088	rs260199	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	9q31.3		rs260199-A	NR	1E-10		0.0153	[0.011-0.02] unit decrease	Affymetrix, Illumina [20538307] (imputed)	N
1446	chr9	112890305	112890306	rs914356	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	9q31.3	AKAP2	rs914356-?	NR	6E-6	(PC 36:2)	0.15514784	[0.088-0.222] unit increase	Affymetrix [at least 2500000] (imputed)	N
1446	chr9	112891634	112891635	rs17806457	24281739	Boardman JD	2013-11-27	Demography	Is the gene-environment interaction paradigm relevant to genome-wide studies? The case of education and body mass index.	Body mass index (education interaction)	816 non-college graduate individuals, 1,061 college graduate individuals	NA	9q31.3	NR	rs17806457-?	NR	6E-6				Affymetrix [260402]	N
1446	chr9	112901006	112901007	rs3739455	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	9q31.3	AKAP2	rs3739455-?	NR	9E-7	(PC 34:2)	0.23668261	[0.14-0.33] unit increase	Affymetrix [at least 2500000] (imputed)	N
1446	chr9	112909037	112909038	rs4978874	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	9q31.3	PALM2-AKAP2, AKAP2	rs4978874-C	0.509748	3E-9		0.013314961	[0.0089-0.0177] unit decrease	Affymetrix [93095623] (imputed)	N
1446	chr9	112911258	112911259	rs7865383	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		PALM2-AKAP2	rs7865383-?	NR	5E-11	(male)	1.56032	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1446	chr9	112911258	112911259	rs7865383	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		PALM2-AKAP2	rs7865383-?	NR	2E-10		1.3019	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1446	chr9	112927880	112927881	rs10980231	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Posterior-cingulate cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	9q31.3	PALM2-AKAP2, AKAP2	rs10980231-?		7E-6				Illumina [4322238] (imputed)	N
1446	chr9	112945404	112945405	rs7032940	19893584	Kim JJ	2009-11-06	J Hum Genet	Identification of 15 loci influencing height in a Korean population.	Height	8,842 Korean ancestry individuals	NA	9q31.3	PALM2-AKAP2	rs7032940-A	0.21	3E-6		1.32	[NR] cm increase	Affymetrix [334546]	N
1446	chr9	112956334	112956335	rs67879551	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		C9orf152	rs67879551-?	NR	2E-11		1.52655	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1446	chr9	112956334	112956335	rs67879551	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		C9orf152	rs67879551-?	NR	1E-11	(male)	1.66064	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1446	chr9	112975868	112975869	rs116530595	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		9q31.3	Intergenic	rs116530595-T	0.018	9E-6	(liability model)	0.26	[0.14-0.38] unit increase	NR [19725427] (imputed)	N
1447	chr9	113014726	113014727	rs4135188	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	9q31.3		rs4135188-C	NR	9E-9		0.0131	[0.0086-0.0176] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
1447	chr9	113015001	113015001	rs138680343	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	9q31.3	TXN	rs138680343-ATT	0.140193	6E-9		0.01880493	[0.012-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1447	chr9	113018754	113018755	rs1049927	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	9q31.3	TXN	rs1049927-C	0.140598	8E-11		0.021009464	[0.015-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1447	chr9	113018754	113018755	rs1049927	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	9q31.3	NR	rs1049927-C	0.13785	2E-14		0.020282	[0.015-0.025] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
1447	chr9	113018754	113018755	rs1049927	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	9q31.3	NR	rs1049927-C	0.140067	4E-12		0.019304	[0.014-0.025] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
1447	chr9	113018754	113018755	rs1049927	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9q31.3		rs1049927-?	NR	7E-16				NR [~ 8900000] (imputed)	N
1447	chr9	113023861	113023862	rs72757062	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q31.3	NR	rs72757062-G	0.123948	4E-14				Affymetrix, Illumina [24246363] (imputed)	N
1447	chr9	113023861	113023862	rs72757062	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q31.3	NR	rs72757062-G	0.124412	9E-13				Affymetrix, Illumina [20825802] (imputed)	N
1447	chr9	113023861	113023862	rs72757062	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	9q31.3		rs72757062-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1447	chr9	113032355	113032356	rs4978899	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	9q31.3	TXN, TXNDC8	rs4978899-T	0.621	3E-7		0.0296459	[0.018-0.041] unit increase	Illumina [13519193] (imputed)	N
1447	chr9	113032355	113032356	rs4978899	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	9q31.3	Intergenic	rs4978899-T	NR	1E-6	(men)	0.0355043	[0.021-0.05] unit increase	Illumina [13520550] (imputed)	N
1447	chr9	113032355	113032356	rs4978899	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	9q31.3	Intergenic	rs4978899-T	NR	1E-6		0.0256548	[0.015-0.036] unit increase	Illumina [13520550] (imputed)	N
1447	chr9	113034489	113034490	rs62580766	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	9q31.3		rs62580766-T	NR	5E-8		0.0144	[0.0093-0.0195] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
1447	chr9	113034489	113034490	rs62580766	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	9q31.3	NR	rs62580766-T	0.18165200000000004	3E-27		0.0109816	[0.0088-0.0131] unit increase	Affymetrix [16582909] (imputed)	N
1447	chr9	113034489	113034490	rs62580766	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	9q31.3	NR	rs62580766-T	0.181214	8E-16		0.011401	[0.0083-0.0145] unit increase	Affymetrix [16585854] (imputed)	N
1447	chr9	113034489	113034490	rs62580766	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	9q31.3	NR	rs62580766-T	0.18211100000000002	2E-11		0.00970827	[0.0068-0.0126] unit increase	Affymetrix [16582621] (imputed)	N
1447	chr9	113034489	113034490	rs62580766	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	9q31.3	NR	rs62580766-T	0.18165200000000004	1E-22		0.0108823	[0.0085-0.0133] unit increase	Affymetrix [16582965] (imputed)	N
1447	chr9	113034489	113034490	rs62580766	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	9q31.3	NR	rs62580766-T	0.181214	4E-12		0.0111741	[0.0076-0.0148] unit increase	Affymetrix [16585866] (imputed)	N
1447	chr9	113034489	113034490	rs62580766	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	9q31.3	NR	rs62580766-T	0.18211100000000002	2E-10		0.00960882	[0.0065-0.0127] unit increase	Affymetrix [16582614] (imputed)	N
1447	chr9	113035151	113035152	rs62580767	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	9q31.3	NR	rs62580767-C	NR	1E-9		0.019	[0.013-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
1447	chr9	113035151	113035152	rs62580767	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	9q31.3	NR	rs62580767-C	NR	9E-13		0.0234	[0.017-0.03] unit increase	Affymetrix [9000000] (imputed)	N
1447	chr9	113091522	113091523	rs7041938	31028280	Ierodiakonou D	2019-04-26	J Expo Sci Environ Epidemiol	Pathway analysis of a genome-wide gene by air pollution interaction study in asthmatic children.	Post-bronchodilator FEV1 x air pollution (NO2) interaction in childhood asthma	522 European ancestry children	88 African-American children	9q31.3	TXNDC8	rs7041938-G		7E-6	(EA)	1.14	unit increase	Illumina [474792]	N
1448	chr9	113117182	113117183	rs7038415	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	286 European ancestry cases, 2,652 European ancestry controls, 76 Han Chinese ancestry cases, 889 Han Chinese ancestry controls, 46 South Asian ancestry cases, 501 South Asian ancestry controls, 683 Turkish ancestry cases, 1,721 Turkish ancestry controls	NA	9q31.3	SVEP1	rs7038415-A	NR	5E-8		1.4528	NR	Illumina [up to 4495750] (imputed)	N
1448	chr9	113126806	113126807	rs1571235	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q31.3	NR	rs1571235-C	0.14432	2E-17				Affymetrix, Illumina [24588908] (imputed)	N
1448	chr9	113131162	113131163	rs1327533	20834067	Yashin AI	2010-09-01	Aging (Albany NY)	Joint influence of small-effect genetic variants on human longevity.	Longevity	1,173 individuals	NA	9q31.3	SVEP1	rs1327533-?	NR	1E-6	(less than or equal to)			NR [~ 550000]	N
1448	chr9	113147960	113147960	rs147772407	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q31.3	NR	rs147772407-TTCAGTGAATCCTAG	0.036	2E-22	(Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1, SVEP1.11109.56.3)	0.65	[0.51-0.79] unit increase	Affymetrix [10572788] (imputed)	N
1448	chr9	113148238	113148239	rs10817003	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	9q31.3	SVEP1	rs10817003-A	0.0355255	5E-10		0.101508796	[0.07-0.133] unit increase	Affymetrix [7288503] (imputed)	N
1448	chr9	113153328	113153329	rs7847526	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	9q31.3		rs7847526-C	NR	2E-10		0.0392	[0.027-0.051] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1448	chr9	113153328	113153329	rs7847526	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	9q31.3	SVEP1	rs7847526-C	0.8484	4E-8		0.2558	[0.16-0.35] mmHg decrease	Affymetrix [NR] (imputed)	N
1448	chr9	113153646	113153647	rs10759426	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	9q31.3	NR	rs10759426-C	0.128083	4E-15		0.021455	[0.016-0.027] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1448	chr9	113155246	113155247	rs10817007	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	9q31.3		rs10817007-G	NR	2E-9		0.0145	[0.0098-0.0192] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1448	chr9	113155246	113155247	rs10817007	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	9q31.3		rs10817007-G	NR	2E-12		0.0171	[0.012-0.022] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1448	chr9	113155246	113155247	rs10817007	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	9q31.3	SVEP1	rs10817007-G	0.129344	5E-12		0.023026984	[0.016-0.03] unit increase	Affymetrix [93095623] (imputed)	N
1448	chr9	113155246	113155247	rs10817007	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	9q31.3		rs10817007-?	NR	2E-18				NR [~ 8900000] (imputed)	N
1448	chr9	113168238	113168239	rs6477768	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	9q31.3	NR	rs6477768-A	0.682231	3E-9		0.00573825	[0.004-0.0075] unit increase	Affymetrix [16582909] (imputed)	N
1448	chr9	113168238	113168239	rs6477768	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	9q31.3	NR	rs6477768-A	0.682231	2E-7		0.00568808	[0.0037-0.0076] unit increase	Affymetrix [16582965] (imputed)	N
1448	chr9	113169774	113169775	rs111245230	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	9q31.3		rs111245230-C	0.03	2E-8		5.6	z score increase	Affymetrix [9061022] (imputed)	N
1448	chr9	113169774	113169775	rs111245230	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	9q31.3	SVEP1	rs111245230-T	0.9647	8E-9		0.098	[0.065-0.131] unit decrease	NR [8041861] (imputed)	N
1448	chr9	113169774	113169775	rs111245230	28714975	Nelson CP	2017-07-17	Nat Genet	Association analyses based on false discovery rate implicate new loci for coronary artery disease.	Coronary artery disease (myocardial infarction, percutaneous transluminal coronary angioplasty, coronary artery bypass grafting, angina or chromic ischemic heart disease)	18,467 European and unknown ancestry cases, 45,264 European and unknown ancestry controls	57,347 European and unknown ancestry cases, 219,521 European and unknown ancestry controls	9q31.3	SVEP1	rs111245230-C	0.036	8E-7		1.12	[1.07-1.17]	Affymetrix [9149595] (imputed)	N
1448	chr9	113169774	113169775	rs111245230	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Systolic blood pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	154,543 European ancestry individuals, 26,183 South Asian ancestry individuals	9q31.3	SVEP1	rs111245230-C	0.032	1E-7		0.7	[0.45-0.95] unit increase	Illumina [247039]	N
1448	chr9	113169774	113169775	rs111245230	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Mean arterial pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	NA	9q31.3	SVEP1	rs111245230-C	0.0323238353618636	8E-8		0.68376994	[0.43-0.93] unit increase	Illumina [247039]	N
1448	chr9	113171261	113171262	rs16914997	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q31.3	NR	rs16914997-A	0.211	7E-24	(Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1, SVEP1.11178.21.3)	0.3	[0.24-0.36] unit decrease	Affymetrix [10572788] (imputed)	N
1448	chr9	113174022	113174023	rs28431893	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	9q31.3	NR	rs28431893-A	0.0349	4E-8				NR [9056863] (imputed)	N
1448	chr9	113185800	113185801	rs7031072	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SVEP1	5,367 Icelandic ancestry individuals	NA	9q31.3		rs7031072-G	0.206	3E-25		0.226529	[0.18-0.27] unit increase	Illumina [7506463] (imputed)	N
1448	chr9	113187720	113187721	rs2986669	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	9q31.3	NR	rs2986669-A	0.681436	5E-11		0.0090621	[0.0065-0.0117] unit increase	Affymetrix [16585854] (imputed)	N
1448	chr9	113187720	113187721	rs2986669	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	9q31.3	NR	rs2986669-A	0.681436	4E-9		0.00901979	[0.006-0.012] unit increase	Affymetrix [16585866] (imputed)	N
1448	chr9	113197262	113197263	rs7042161	20351715	Liu Y	2010-03-30	Mol Psychiatry	Meta-analysis of genome-wide association data of bipolar disorder and major depressive disorder.	Bipolar disorder	4,387 European and unknown ancestry cases, 6,209 European and unknown ancestry controls	NA	9q31.3	SVEP1	rs7042161-?	NR	6E-6				Affymetrix [1769948] (imputed)	N
1448	chr9	113197262	113197263	rs7042161	18711365	Ferreira MA	2008-08-17	Nat Genet	Collaborative genome-wide association analysis supports a role for ANK3 and CACNA1C in bipolar disorder.	Bipolar disorder	4,387 European ancestry cases, 6,209 European ancestry controls	NA	9q31.3	NR	rs7042161-?	0.65	6E-6		1.15	[NR]	Affymetrix [1769948] (imputed)	N
1448	chr9	113198890	113198891	rs28663144	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	9q31.3	SVEP1	rs28663144-A		4E-11		0.694	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1448	chr9	113198890	113198891	rs28663144	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	9q31.3	SVEP1	rs28663144-A		2E-7		0.366	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1448	chr9	113198890	113198891	rs28663144	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	9q31.3	SVEP1	rs28663144-A		5E-7		0.322	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1448	chr9	113207261	113207262	rs187726169	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	9q31.3	SVEP1	rs187726169-A	0.0069	6E-6		0.2068	[0.12-0.3] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1448	chr9	113209503	113209504	rs1889322	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SVEP1	5,367 Icelandic ancestry individuals	NA	9q31.3		rs1889322-T	0.4654	3E-10		0.10911	[0.075-0.143] unit increase	Illumina [7506463] (imputed)	N
1448	chr9	113225829	113225830	rs4978929	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	9q31.3	SVEP1	rs4978929-A	0.665774	7E-9		0.013820004	[0.0091-0.0185] unit decrease	Affymetrix [93095623] (imputed)	N
1448	chr9	113243014	113243015	rs74514462	31194736	Tiensuu H	2019-06-13	PLoS Genet	Risk of spontaneous preterm birth and fetal growth associates with fetal SLIT2.	Spontaneous preterm birth without premature rupture of membranes	101 Finnish ancestry infant cases, 419 Finnish ancestry infant controls	NA	9q31.3	SVEP1	rs74514462-?	NR	8E-6		2.2727273		Illumina [6778521] (imputed)	N
1449	chr9	113250199	113250200	rs76038906	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls, 49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	9q31.3		rs76038906-T	NR	2E-8		0.1234	[0.08-0.167] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1449	chr9	113250199	113250200	rs76038906	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls	NA	9q31.3	SVEP1	rs76038906-T	0.034493	2E-8		0.1233539	[0.08-0.167] unit increase	Affymetrix [7288503] (imputed)	N
1449	chr9	113250199	113250200	rs76038906	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	9q31.3		rs76038906-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1449	chr9	113260707	113260708	rs78742138	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SVEP1	5,367 Icelandic ancestry individuals	NA	9q31.3		rs78742138-C	0.03952	7E-48		0.643837	[0.56-0.73] unit increase	Illumina [7506463] (imputed)	N
1449	chr9	113260707	113260708	rs78742138	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SVEP1	5,367 Icelandic ancestry individuals	NA	9q31.3		rs78742138-C	0.03952	2E-56		0.701953	[0.62-0.79] unit increase	Illumina [7506463] (imputed)	N
1449	chr9	113260707	113260708	rs78742138	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein BID	5,365 Icelandic ancestry individuals	NA	9q31.3		rs78742138-C	0.03952	2E-14		0.361542	[0.27-0.45] unit increase	Illumina [7506463] (imputed)	N
1449	chr9	113260707	113260708	rs78742138	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	9q31.3	SVEP1	rs78742138-T	0.96390625	8E-28	(SVEP1, 11178_21_3)	0.6651358	[0.55-0.78] unit decrease	Illumina [> 1000000] (imputed)	N
1449	chr9	113260707	113260708	rs78742138	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	9q31.3	SVEP1	rs78742138-T	0.96390625	5E-24	(SVEP1, 11109_56_3)	0.61348087	[0.5-0.73] unit decrease	Illumina [> 1000000] (imputed)	N
1449	chr9	113270600	113270601	rs4427239	33138277	Cismaru AL	2020-10-29	Genes (Basel)	Genome-Wide Association Study of Metamizole-Induced Agranulocytosis in European Populations.	Metamizole-induced agranulocytosis	30 European ancestry cases, 191 European ancestry controls	41 European ancestry cases, 273 European ancestry controls	9q31.3	SVEP1	rs4427239-A	NR	6E-7		5.47	[2.81-10.65]	Illumina [~ 7000000] (imputed)	N
1449	chr9	113276669	113276670	rs76665138	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q31.3	NR	rs76665138-A	0.217	6E-13	(Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1, SVEP1.11178.21.3)	0.21	[0.15-0.27] unit decrease	Affymetrix [10572788] (imputed)	N
1449	chr9	113277642	113277643	rs7048551	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SVEP1	5,367 Icelandic ancestry individuals	NA	9q31.3		rs7048551-T	0.2153	4E-16		0.171083	[0.13-0.21] unit decrease	Illumina [7506463] (imputed)	N
1449	chr9	113300834	113300835	rs1889321	22424883	Imboden M	2012-03-15	J Allergy Clin Immunol	Genome-wide association study of lung function decline in adults with and without asthma.	Pulmonary function decline	1,441 European ancestry asthma cases, 2,677 European ancestry controls	1,160 European ancestry asthma cases, 10,858 European ancestry controls	9q31.3	MUSK	rs1889321-?	NR	7E-7	(FEV1 decline in non-asthmatics)	0.1501	[0.091-0.209] unit decrease	Illumina [~ 2500000] (imputed)	N
1449	chr9	113312229	113312230	rs201060222	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Platelet distribution width	445,262 European ancestry individuals	NA	9q31.3		rs201060222-?	NR	7E-11		0.16346	[0.11-0.21] unit increase	NR [9800000] (imputed)	N
1449	chr9	113312230	113312231	rs61751937	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	9q31.3		rs61751937-C	NR	1E-8		0.0415	[0.027-0.056] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
1449	chr9	113312230	113312231	rs61751937	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	23,963 European ancestry cases, 306,942 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	43,254 European ancestry cases, 1,471,118 European ancestry controls	9q31.3	SVEP1	rs61751937-C	NR	4E-8		0.122	unit increase	Illumina [15409056] (imputed)	N
1449	chr9	113312230	113312231	rs61751937	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	9q31.3	NR	rs61751937-C	NR	1E-9		0.045	[0.03-0.06] unit decrease	Affymetrix [9000000] (imputed)	N
1449	chr9	113312230	113312231	rs61751937	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	9q31.3	NR	rs61751937-C	NR	4E-10		0.0466	[0.032-0.061] unit decrease	Affymetrix [9000000] (imputed)	N
1449	chr9	113312230	113312231	rs61751937	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	9q31.3	SVEP1	rs61751937-C	0.029162	5E-29		0.074755386	[0.062-0.088] unit increase	Affymetrix [93095623] (imputed)	N
1449	chr9	113312230	113312231	rs61751937	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	9q31.3	SVEP1	rs61751937-C	0.029172	2E-17		0.05671632	[0.044-0.07] unit increase	Affymetrix [93095623] (imputed)	N
1449	chr9	113312230	113312231	rs61751937	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q31.3	NR	rs61751937-G	0.971719	1E-17				Affymetrix, Illumina [17210439] (imputed)	N
1449	chr9	113312230	113312231	rs61751937	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	9q31.3	NR	rs61751937-G	0.970988	3E-20		0.052806	[0.042-0.064] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
1449	chr9	113312230	113312231	rs61751937	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q31.3	SVEP1	rs61751937-C	0.03	5E-64	(Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1, SVEP1.11178.21.3)	1.19	[1.05-1.33] unit increase	Affymetrix [10572788] (imputed)	N
1449	chr9	113312230	113312231	rs61751937	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q31.3	SVEP1	rs61751937-C	0.03	3E-50	(Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1, SVEP1.11109.56.3)	1.06	[0.92-1.2] unit increase	Affymetrix [10572788] (imputed)	N
1449	chr9	113312230	113312231	rs61751937	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	9q31.3	SVEP1	rs61751937-C	0.0292	5E-9		0.06225402	[0.041-0.083] unit increase	Affymetrix [~ 2500000] (imputed)	N
1449	chr9	113316792	113316793	rs2991364	34309184	Kawaratani H	2021-07-26	Liver Int	A Genome-Wide Association Study Identifying SVEP1 Variant as a Predictor of Response to Tolvaptan for Cirrhotic Ascites.	Response to tolvaptan in hepatic ascites (body weight gain)	25 Japanese ancestry non-responder cases with increase of body weight, 156 Japanese ancestry responder controls with >1.5 kg decrease of body weight	55 Japanese ancestry non-responder cases with increase of body weight, 177 Japanese ancestry responder controls with >1.5 kg decrease of body weight	9q31.3		rs2991364-?	NR	2E-8		3.55	[2.23-5.65]	Affymetrix [5420892] (imputed)	N
1449	chr9	113319331	113319332	rs9299186	34309184	Kawaratani H	2021-07-26	Liver Int	A Genome-Wide Association Study Identifying SVEP1 Variant as a Predictor of Response to Tolvaptan for Cirrhotic Ascites.	Response to tolvaptan in hepatic ascites (body weight gain)	25 Japanese ancestry non-responder cases with increase of body weight, 156 Japanese ancestry responder controls with >1.5 kg decrease of body weight	55 Japanese ancestry non-responder cases with increase of body weight, 177 Japanese ancestry responder controls with >1.5 kg decrease of body weight	9q31.3		rs9299186-?	NR	6E-8		3.33	[2.11-5.24]	Affymetrix [5420892] (imputed)	N
1449	chr9	113329057	113329058	rs4978937	34309184	Kawaratani H	2021-07-26	Liver Int	A Genome-Wide Association Study Identifying SVEP1 Variant as a Predictor of Response to Tolvaptan for Cirrhotic Ascites.	Response to tolvaptan in hepatic ascites (body weight gain)	25 Japanese ancestry non-responder cases with increase of body weight, 156 Japanese ancestry responder controls with >1.5 kg decrease of body weight	55 Japanese ancestry non-responder cases with increase of body weight, 177 Japanese ancestry responder controls with >1.5 kg decrease of body weight	9q31.3		rs4978937-?	NR	1E-7		3.27	[2.08-5.14]	Affymetrix [5420892] (imputed)	N
1449	chr9	113338734	113338735	rs10980457	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	9q31.3		rs10980457-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1450	chr9	113403845	113403846	rs3001115	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	9q31.3		rs3001115-?	NR	3E-11				NR [~ 8900000] (imputed)	N
1450	chr9	113414938	113414939	rs12338959	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	9q31.3		rs12338959-?	NR	1E-11				NR [~ 8900000] (imputed)	N
1450	chr9	113419758	113419759	rs10980508	23386860	Pasquale LR	2013-01-30	Front Genet	Exploring genome-wide - dietary heme iron intake interactions and the risk of type 2 diabetes.	Type 2 diabetes (dietary heme iron intake interaction)	1,806 European ancestry cases, 2,965 European ancestry controls	NA	9q31.3	SVEP1, MUSK	rs10980508-?	NR	1E-6		0.64	[NR] unit increase	Affymetrix [681770]	N
1450	chr9	113434376	113434377	rs7030683	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9q31.3		rs7030683-?	NR	8E-10				NR [~ 8900000] (imputed)	N
1450	chr9	113440932	113440933	rs10980517	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	9q31.3	MUSK	rs10980517-A	0.533197	1E-10		0.0121918	[0.0085-0.0159] unit decrease	NR [13737936] (imputed)	N
1450	chr9	113467797	113467798	rs34163298	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	9q31.3	MUSK	rs34163298-T	0.623	3E-6		0.0314	[0.018-0.045] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1450	chr9	113499262	113499263	rs67799713	31271701	Thibord F	2019-07-04	J Thromb Haemost	A Genome Wide Association Study on plasma FV levels identified PLXDC2 as a new modifier of the coagulation process.	Plasma factor V levels in venous thrombosis (conditioned on rs6027)	510 European ancestry individuals	1,156 European ancestry individuals	9q31.3	MUSK	rs67799713-?	NR	2E-6		0.09	[0.053-0.127] unit decrease	NR [6264382] (imputed)	N
1450	chr9	113501371	113501372	rs4574919	34659352	Bensenor I	2021-09-29	Front Genet	Genome-Wide Association of Proprotein Convertase Subtilisin/Kexin Type 9 Plasma Levels in the ELSA-Brasil Study.	Plasma PCSK9 levels	96 Black ancestry individuals, 178 individuals, 480 White ancestry individuals, 39 Asian ancestry individuals, 17 indigenous ancestry individuals	NA	9q31.3		rs4574919-?	NR	7E-8				Affymetrix [11524071] (imputed)	N
1451	chr9	113523090	113523091	rs2186801	33937227	Zhang W	2021-04-16	Front Cell Dev Biol	Detecting Gene-Environment Interaction for Maternal Exposures Using Case-Parent Trios Ascertained Through a Case With Non-Syndromic Orofacial Cleft.	Orofacial cleft x maternal periconceptional smoking interaction (1df)	321 European ancestry exposed trios, 875 European ancestry unexposed trios, 42 Asian ancestry exposed trios, 1,224 Asian ancestry unexposed trios, 79 Latin American exposed trios, 434 Latin American unexposed trios	NA	9q31.3	MUSK	rs2186801-G	NR	2E-7		0.494	[0.379-0.643]	Illumina [up to 6762077] (imputed)	N
1451	chr9	113528455	113528456	rs2846459	32469969	Pott J	2020-05-29	PLoS One	Genome-wide analysis of carotid plaque burden suggests a role of IL5 in men.	Mean degree of stenosis	727 European ancestry men, 550 European ancestry women	NA	9q31.3	NR	rs2846459-C	0.146024	6E-7	(women)	0.228375	[0.14-0.32] % decrease	Affymetrix [532676] (imputed)	N
1451	chr9	113528455	113528456	rs2846459	32469969	Pott J	2020-05-29	PLoS One	Genome-wide analysis of carotid plaque burden suggests a role of IL5 in men.	Maximum stenosis	727 European ancestry men, 550 European ancestry women	NA	9q31.3	NR	rs2846459-C	0.146024	6E-6	(women)	0.251663	[0.14-0.36] % decrease	Affymetrix [532676] (imputed)	N
1451	chr9	113567885	113567886	rs56254339	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9q31.3	NR	rs56254339-A	0.01394	1E-8	(RMDN3)	0.01696	NR unit increase	Illumina [1671387] (imputed)	N
1451	chr9	113570106	113570107	rs2846444	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	9q31.3	MUSK	rs2846444-G	0.413275	4E-13		0.0139679	[0.01-0.018] unit decrease	NR [13737936] (imputed)	N
1451	chr9	113570106	113570107	rs2846444	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	9q31.3		rs2846444-?	NR	8E-18				NR [~ 8900000] (imputed)	N
1451	chr9	113570106	113570107	rs2846444	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	9q31.3		rs2846444-?	NR	1E-17		0.0168442	[0.013-0.021] unit decrease	Affymetrix [20259828] (imputed)	N
1451	chr9	113625459	113625460	rs12006500	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Non-small cell lung cancer	27,120 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	9q31.3	NR	rs12006500-A	0.65	4E-6		1.09	[1.05-1.13]	NR [NR] (imputed)	N
1451	chr9	113625459	113625460	rs12006500	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Lung adenocarcinoma	15,581 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	9q31.3	NR	rs12006500-A	0.65	8E-8		1.12	[1.07-1.16]	NR [NR] (imputed)	N
1451	chr9	113632211	113632212	rs2766979	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical thickness (MOSTest)	26,502 European ancestry individuals	NA	9q31.3	PKDCC	rs2766979-?		2E-9				NR [7428630] (imputed)	N
1451	chr9	113636792	113636793	rs551517	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	9q31.3	LPAR1	rs551517-T	0.2683	1E-17		0.03445372	[0.027-0.042] unit increase	Affymetrix [~ 2500000] (imputed)	N
1451	chr9	113636792	113636793	rs551517	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	9q31.3	LPAR1	rs551517-T	0.2682	1E-19		0.03660034	[0.029-0.045] unit increase	Affymetrix [~ 2500000] (imputed)	N
1451	chr9	113636792	113636793	rs551517	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	9q31.3	LPAR1	rs551517-T	0.279	2E-6		0.049	NR unit decrease	Illumina [NR] (imputed)	N
1451	chr9	113638235	113638236	rs496475	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	9q31.3	LPAR1	rs496475-G	0.386662	4E-47		0.032687165	[0.028-0.037] unit increase	Affymetrix [93095623] (imputed)	N
1451	chr9	113638235	113638236	rs496475	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	9q31.3	LPAR1	rs496475-G	0.386664	5E-54		0.035069864	[0.031-0.04] unit increase	Affymetrix [93095623] (imputed)	N
1451	chr9	113638235	113638236	rs496475	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	9q31.3	NR	rs496475-G	0.387008	2E-66		0.035017	[0.031-0.039] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
1451	chr9	113638374	113638375	rs10980607	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	9q31.3	LPAR1	rs10980607-T	0.2111	4E-14		0.03315949	[0.025-0.042] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1451	chr9	113638374	113638375	rs10980607	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	9q31.3	LPAR1	rs10980607-T	0.2111	1E-16		0.03650059	[0.028-0.045] unit increase	Affymetrix [~ 2500000] (imputed)	N
1451	chr9	113638738	113638739	rs491855	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	9q31.3		rs491855-T	0.615	3E-16				Affymetrix [10369434] (imputed)	N
1452	chr9	113640131	113640132	rs547116	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q31.3	NR	rs547116-A	0.412116	3E-65				Affymetrix, Illumina [19872809] (imputed)	N
1452	chr9	113640131	113640132	rs547116	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	9q31.3	LPAR1	rs547116-A	0.3817	6E-20		0.03348749	[0.026-0.041] unit increase	Affymetrix [~ 2500000] (imputed)	N
1452	chr9	113641782	113641783	rs1751242	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	9q31.3		rs1751242-A	NR	3E-34		0.0205	[0.017-0.024] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
1452	chr9	113641782	113641783	rs1751242	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	9q31.3		rs1751242-?	NR	3E-55				NR [~ 8900000] (imputed)	N
1452	chr9	113651160	113651161	rs4556147	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 58)	19,670 European ancestry individuals	NA	9q31.3		rs4556147-?	NR	4E-12				NR [9705931] (imputed)	N
1452	chr9	113660536	113660537	rs10980623	32528159	Choquet H	2020-06-11	Commun Biol	A multiethnic genome-wide analysis of 44,039 individuals identifies 41 new loci associated with central corneal thickness.	Central corneal thickness	32,292 European ancestry individuals, 9,623 East Asian ancestry individuals, 1,367 Hispanic/Latino individuals, 757 African American  individuals	NA	9q31.3	LPAR1	rs10980623-?	NA	3E-21		2.7	[2.15-3.25] unit decrease	Affymetrix [5541230] (imputed)	N
1452	chr9	113660536	113660537	rs10980623	30894546	Ivarsdottir EV	2019-03-20	Nat Commun	Sequence variation at ANAPC1 accounts for 24% of the variability in corneal endothelial cell density.	Central corneal thickness	6,125 Icelandic ancestry individuals	1,459 Icelandic ancestry individuals	9q31.3	LPAR1	rs10980623-?	NR	6E-6		0.102	[0.06-0.14] unit increase	Illumina [NR]	N
1452	chr9	113660536	113660537	rs10980623	29760442	Iglesias AI	2018-05-14	Nat Commun	Cross-ancestry genome-wide association analysis of corneal thickness strengthens link between complex and Mendelian eye diseases.	Central corneal thickness	17,803 European ancestry individuals, 8,107 Asian ancestry individuals	NA	9q31.3	LPAR1	rs10980623-A	0.79	6E-15		2.9	[2.17-3.63] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1452	chr9	113662373	113662374	rs4978966	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta minimum area	35,110 individuals	NA	9q31.3		rs4978966-C	0.789665	2E-10		0.0543068	[0.038-0.071] increase	Affymetrix [NR]	N
1452	chr9	113662373	113662374	rs4978966	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta maximum area	31,908 individuals	NA	9q31.3		rs4978966-C	0.789905	3E-12		0.0622507	[0.044-0.08] increase	Affymetrix [NR]	N
1452	chr9	113662680	113662681	rs1007000	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (min-P)	26,502 European ancestry individuals	NA	9q31.3	CDC42EP3	rs1007000-?		4E-8				NR [7428630] (imputed)	N
1452	chr9	113662680	113662681	rs1007000	23291589	Lu Y	2013-01-06	Nat Genet	Genome-wide association analyses identify multiple loci associated with central corneal thickness and keratoconus.	Corneal structure	13,057 European ancestry individuals, 2,538 Indian ancestry individuals, 2,542 Malay ancestry individuals, 1,883 Chinese ancestry individuals	NA	9q31.3	LPAR1	rs1007000-T	0.22	5E-12		0.07	[0.031-0.109] unit increase	Affymetrix, Illumina [~ 1000000] (imputed)	N
1452	chr9	113665418	113665419	rs1409682	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	9q31.3		rs1409682-A	0.19	1E-23		10.04	z score increase	Affymetrix [9061022] (imputed)	N
1452	chr9	113665418	113665419	rs1409682	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	9q31.3		rs1409682-A	0.19	3E-32		11.82	z score increase	Affymetrix [9061022] (imputed)	N
1452	chr9	113665418	113665419	rs1409682	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	9q31.3		rs1409682-A	0.19	8E-17		8.33	z score increase	Affymetrix [9061022] (imputed)	N
1452	chr9	113665418	113665419	rs1409682	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	9q31.3	NR	rs1409682-A	0.2125	1E-17				NR [9056863] (imputed)	N
1452	chr9	113665418	113665419	rs1409682	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	9q31.3	NR	rs1409682-A	0.2125	1E-14				NR [9056863] (imputed)	N
1452	chr9	113671402	113671403	rs10980628	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	9q31.3	NR	rs10980628-C	0.2097	3E-9		1.07	[1.04-1.09]	Affymetrix, Illumina [16900397] (imputed)	N
1452	chr9	113677240	113677241	rs72748148	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Central corneal thickness	16,204 European ancestry individuals	NA	9q31.3	LPAR1	rs72748148-A	0.214	6E-11		3.095	[2.17-4.02] ?m increase	Affymetrix, Illumina [9249813] (imputed)	N
1452	chr9	113678095	113678096	rs1326895	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Pursuit maintenance gain	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	9q31.3	LPAR1	rs1326895-T	0.03846	3E-6	(African)			Illumina [4404269] (imputed)	N
1452	chr9	113679616	113679617	rs72748157	32963231	Hofer E	2020-09-22	Nat Commun	Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.	Cortical thickness	22,163 European and African American ancestry individuals	22,363 European ancestry individuals	9q31.3	LPAR1	rs72748157-?		5E-13	(Insula)			Affymetrix, Illumina [NR] (imputed)	N
1452	chr9	113709293	113709293	rs548894189	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	9q31.3	NR	rs548894189-ATAAT	NR	1E-9		0.0222	[0.015-0.029] unit decrease	Affymetrix [9000000] (imputed)	N
1452	chr9	113737616	113737617	rs10980667	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	9q31.3	MUSK	rs10980667-?	NR	4E-6	(thiamine)	0.22272322	[0.13-0.32] unit increase	Affymetrix [at least 2500000] (imputed)	N
1452	chr9	113743812	113743813	rs118027681	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	9q31.3		rs118027681-C	0.977	2E-8				Affymetrix [10369434] (imputed)	N
1452	chr9	113750961	113750962	rs7872800	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	9q31.3	LPAR1	rs7872800-G	0.328419	9E-11		0.01538528	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1452	chr9	113750961	113750962	rs7872800	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	9q31.3	LPAR1	rs7872800-G	0.328425	2E-11		0.015804531	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1452	chr9	113765168	113765169	rs734250	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	9q31.3	MUSK	rs734250-?	NR	1E-6	(SM 24:0)	0.30014598	[0.18-0.42] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1453	chr9	113774384	113774385	rs10980691	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	9q31.3		rs10980691-G	0.88	2E-28				Affymetrix [10369434] (imputed)	N
1453	chr9	113774384	113774385	rs10980691	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	9q31.3		rs10980691-G	0.88	2E-22				Affymetrix [10369434] (imputed)	N
1453	chr9	113784556	113784557	rs10980694	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume x hypertension interaction (2df)	46,055 European ancestry individuals	NA	9q31.3	LPAR1	rs10980694-T	0.8751	9E-6				Affymetrix, Illumina [9900000] (imputed)	N
1453	chr9	113784556	113784557	rs10980694	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume (adjusted for hypertension)	46,055 European ancestry individuals, 2,469 African American individuals	NA	9q31.3	LPAR1	rs10980694-T	0.8751	5E-6		0.0413	[0.023-0.059] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1453	chr9	113784556	113784557	rs10980694	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume (adjusted for hypertension)	46,055 European ancestry individuals	NA	9q31.3	LPAR1	rs10980694-T	0.8751	3E-6		0.0413	[0.024-0.059] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1453	chr9	113784556	113784557	rs10980694	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	48,454 European ancestry individuals	NA	9q31.3	LPAR1	rs10980694-T	0.8751	2E-6		0.041	[0.024-0.058] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1453	chr9	113784556	113784557	rs10980694	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	2,516 African American individuals, 48,454 European ancestry individuals	NA	9q31.3	LPAR1	rs10980694-T	0.8751	7E-6		0.0403	[0.023-0.058] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1453	chr9	113791973	113791974	rs10817133	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9q31.3		rs10817133-?	NR	2E-29				NR [~ 8900000] (imputed)	N
1453	chr9	113792705	113792706	rs3739707	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	9q31.3	LPAR1	rs3739707-A	0.247	4E-12		0.024	[0.016-0.032] unit decrease	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
1453	chr9	113803626	113803627	rs10980706	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	9q31.3		rs10980706-T	NR	3E-27		0.0151	[0.012-0.018] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1453	chr9	113807081	113807082	rs1468758	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	9q31.3	LPAR1	rs1468758-T	0.25	1E-9		0.026	[NR] unit decrease	Affymetrix, Illumina [2834208] (imputed)	N
1453	chr9	113815163	113815164	rs4576485	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	9q31.3		rs4576485-G	0.16828	2E-9		0.018505272	[0.012-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1453	chr9	113824580	113824581	rs12236727	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	9q31.3	LPAR1, MIR7702	rs12236727-?	NR	3E-15		0.02330603	[0.018-0.029] unit decrease	Illumina [27896057] (imputed)	N
1453	chr9	113828149	113828150	rs12686489	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	334,468 European ancestry, NR ancestry individuals	NA	9q31.3		rs12686489-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1453	chr9	113828149	113828150	rs12686489	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	9q31.3		rs12686489-T	0.861	8E-44				Affymetrix [10369434] (imputed)	N
1453	chr9	113828810	113828811	rs1008158	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	9q31.3	intergenic	rs1008158-A	0.6581	4E-15		0.0157	[0.012-0.02] unit decrease	Affymetrix [18391927] (imputed)	N
1453	chr9	113830546	113830547	rs2418130	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	9q31.3		rs2418130-T	0.333808	8E-10		0.014447962	[0.0098-0.0191] unit decrease	Affymetrix [93095623] (imputed)	N
1453	chr9	113830672	113830673	rs2418131	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 3)	19,670 European ancestry individuals	NA	9q31.3		rs2418131-?	NR	1E-9				NR [9705931] (imputed)	N
1453	chr9	113832691	113832692	rs5027597	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	9q31.3	LPAR1	rs5027597-?		4E-11				NR [7428630] (imputed)	N
1453	chr9	113834437	113834438	rs1978304	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	9q31.3		rs1978304-C	0.393438	5E-10		0.014609218	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
1453	chr9	113835294	113835295	rs1989183	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	9q31.3		rs1989183-C	0.393953	4E-17		0.019777905	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1453	chr9	113854107	113854108	rs62570773	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	9q31.3		rs62570773-G	0.871	4E-85				Affymetrix [10369434] (imputed)	N
1453	chr9	113858932	113858933	rs1002607	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	9q31.3	RNY4P18	rs1002607-T	NR	1E-9		0.0175401	[0.012-0.023] unit decrease	Affymetrix [319769] (imputed)	N
1453	chr9	113858932	113858933	rs1002607	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	9q31.3	RNY4P18	rs1002607-T	NR	1E-9		0.0176332	[0.012-0.023] unit decrease	Affymetrix [319769] (imputed)	N
1453	chr9	113858932	113858933	rs1002607	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	9q31.3	RNY4P18	rs1002607-T	NR	1E-9		0.018161	[0.012-0.024] unit increase	Affymetrix [321788] (imputed)	N
1453	chr9	113858932	113858933	rs1002607	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	9q31.3	NR	rs1002607-C	0.592852	2E-11		0.012987	[0.0092-0.0168] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1453	chr9	113865085	113865086	rs79315438	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	9q31.3		rs79315438-G	0.981	1E-19				Affymetrix [10369434] (imputed)	N
1453	chr9	113865107	113865108	rs10980763	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	9q31.3	RNY4P18	rs10980763-C	NR	6E-9		0.0169348	[0.011-0.023] unit decrease	Affymetrix [321016] (imputed)	N
1453	chr9	113865766	113865767	rs76487166	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	9q31.3	NR	rs76487166-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
1453	chr9	113866102	113866103	rs112593886	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	9q31.3		rs112593886-T	0.947	2E-13				Affymetrix [10369434] (imputed)	N
1453	chr9	113871090	113871091	rs57822871	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	334,468 European ancestry, NR ancestry individuals	NA	9q31.3		rs57822871-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1453	chr9	113871090	113871091	rs57822871	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	9q31.3		rs57822871-G	0.939	2E-23				Affymetrix [10369434] (imputed)	N
1453	chr9	113874884	113874885	rs10980770	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	9q31.3	LPAR1	rs10980770-G	0.823732	2E-8	(24 ms)	0.0399062	[0.026-0.054] unit increase	Affymetrix [10000000] (imputed)	N
1453	chr9	113874884	113874885	rs10980770	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	9q31.3	LPAR1	rs10980770-G	0.823732	2E-8	(22 ms)	0.0398533	[0.026-0.054] unit increase	Affymetrix [10000000] (imputed)	N
1453	chr9	113892633	113892634	rs56038804	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	9q31.3		rs56038804-C	NR	5E-27		0.0307	[0.025-0.036] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
1453	chr9	113892962	113892963	rs1411424	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	9q31.3	LPAR1	rs1411424-A	0.522509	3E-14		0.023137	[0.017-0.029] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
1453	chr9	113895744	113895745	rs877544	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (monocyte)	21,347 Hispanic or Latin American individuals	NA	9q31.3		rs877544-A	0.5225	2E-11		0.0763	[0.054-0.099] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1453	chr9	113897769	113897770	rs60698178	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	9q31.3	RP11-202G18.1	rs60698178-A	0.55868	4E-13		0.018629536	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1453	chr9	113900059	113900060	rs56369990	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	9q31.3		rs56369990-?	NR	2E-39				NR [~ 8900000] (imputed)	N
1453	chr9	113901308	113901309	rs2418135	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD14+ CD16- monocyte Absolute Count	3,629 Sardinian (founder/genetic isolate) ancestry individuals	NA	9q31.3		rs2418135-A	0.52356	1E-9		0.1487	[0.1-0.2] unit decrease	Illumina [18224179] (imputed)	N
1453	chr9	113901308	113901309	rs2418135	31681408	Yang XL	2019-10-11	Front Genet	Three Novel Loci for Infant Head Circumference Identified by a Joint Association Analysis.	Birth weight (MTAG)	up to 182,902 European ancestry individuals	NA	9q31.3	NR	rs2418135-A	0.52	5E-9		0.022350116	[0.015-0.03] unit increase	NR [1977400] (imputed)	N
1453	chr9	113901308	113901309	rs2418135	31681408	Yang XL	2019-10-11	Front Genet	Three Novel Loci for Infant Head Circumference Identified by a Joint Association Analysis.	Birth length (MTAG)	up to 182,902 European ancestry individuals	NA	9q31.3	NR	rs2418135-A	0.531	4E-9		0.03591192	[0.024-0.048] unit increase	NR [1977400] (imputed)	N
1453	chr9	113901308	113901309	rs2418135	31097437	Plotnikov D	2019-05-16	Br J Ophthalmol	Association between birth weight and refractive error in adulthood: a Mendelian randomisation study.	Birth weight	188,039 European ancestry individuals	NA	9q31.3	NR	rs2418135-A	0.48	1E-8		0.018	[0.012-0.024] z score increase	Affymetrix [up to 10400000] (imputed)	N
1453	chr9	113901308	113901309	rs2418135	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	9q31.3	LPAR1	rs2418135-A	0.522202	2E-14		0.019918	[0.015-0.025] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1454	chr9	113901740	113901741	rs71372609	32438682	Mateos MK	2020-05-19	Cancers (Basel)	Genome-Wide Association Meta-Analysis of Single-Nucleotide Polymorphisms and Symptomatic Venous Thromboembolism during Therapy for Acute Lymphoblastic Leukemia and Lymphoma in Caucasian Children.	Childhood ALL/LBL (acute lymphoblastic leukemia/lymphoblastic lymphoma) treatment-related venous thromboembolism	92 European ancestry cases, 1,481 European ancestry controls	NA	9q31.3	LOC105376219	rs71372609-?		4E-6		14.285714	[4.55-50]	Illumina [NR] (imputed)	N
1454	chr9	113902880	113902881	rs12346499	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Monocyte Absolute Count	3,629 Sardinian (founder/genetic isolate) ancestry individuals	NA	9q31.3		rs12346499-T	0.52334	2E-8		0.1378	[0.09-0.186] unit decrease	Illumina [18224179] (imputed)	N
1454	chr9	113907224	113907225	rs10817154	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	9q31.3	RP11-202G18.1	rs10817154-C	NR	7E-11		0.0189124	[0.013-0.025] unit decrease	Affymetrix [319769] (imputed)	N
1454	chr9	113907224	113907225	rs10817154	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	9q31.3	RP11-202G18.1	rs10817154-C	NR	9E-11		0.0188123	[0.013-0.024] unit decrease	Affymetrix [319769] (imputed)	N
1454	chr9	113911286	113911287	rs117335559	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	334,468 European ancestry, NR ancestry individuals	NA	9q31.3		rs117335559-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1454	chr9	113911286	113911287	rs117335559	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	9q31.3		rs117335559-C	0.972	2E-33				Affymetrix [10369434] (imputed)	N
1454	chr9	113911378	113911379	rs181299481	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		9q31.3	Intergenic	rs181299481-A	0.994	4E-6	(liability model)	0.58	[0.33-0.83] unit decrease	NR [19725427] (imputed)	N
1454	chr9	113912552	113912553	rs10980797	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	95,119 East Asian ancestry individuals	NA	9q31.3		rs10980797-G	0.144025	1E-21		0.0596351	[0.047-0.072] unit decrease	Illumina [13471440] (imputed)	N
1454	chr9	113912552	113912553	rs10980797	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	9q31.3		rs10980797-A	0.51	7E-318				Affymetrix [10369434] (imputed)	N
1454	chr9	113912552	113912553	rs10980797	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	9q31.3		rs10980797-A	0.51	2E-272				Affymetrix [10369434] (imputed)	N
1454	chr9	113912552	113912553	rs10980797	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	9q31.3	RP11-202G18.1	rs10980797-G	NR	3E-11		0.0195532	[0.014-0.025] unit decrease	Affymetrix [321788] (imputed)	N
1454	chr9	113912552	113912553	rs10980797	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	9q31.3	RP11-202G18.1	rs10980797-G	NR	3E-9		0.0167503	[0.011-0.022] unit decrease	Affymetrix [321016] (imputed)	N
1454	chr9	113912552	113912553	rs10980797	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	9q31.3	RP11-202G18.1	rs10980797-G	0.489218	9E-237		0.09024502	[0.085-0.096] unit decrease	Affymetrix [93095623] (imputed)	N
1454	chr9	113912552	113912553	rs10980797	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	9q31.3	RP11-202G18.1	rs10980797-G	0.489222	4E-246		0.09315665	[0.088-0.099] unit decrease	Affymetrix [93095623] (imputed)	N
1454	chr9	113912552	113912553	rs10980797	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q31.3	NR	rs10980797-G	0.412105	7E-47				Affymetrix, Illumina [24649327] (imputed)	N
1454	chr9	113912552	113912553	rs10980797	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	9q31.3	NR	rs10980797-G	0.487935	1E-48		0.026981	[0.023-0.031] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1454	chr9	113912552	113912553	rs10980797	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	88,929 East Asian ancestry individuals	NA	9q31.3	NR	rs10980797-A	0.856	9E-24		0.067816	[0.055-0.081] SD units increase	Affymetrix, Illumina [16289044] (imputed)	N
1454	chr9	113912552	113912553	rs10980797	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	9q31.3	NR	rs10980797-?	NR	8E-20				Affymetrix [~ 8270000] (imputed)	N
1454	chr9	113912552	113912553	rs10980797	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	9q31.3		rs10980797-?	NR	2E-18				NR [~ 8900000] (imputed)	N
1454	chr9	113912552	113912553	rs10980797	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	9q31.3	NR	rs10980797-A	0.5194	5E-20		0.0182	[0.014-0.022] unit decrease	NR [~ 27400000] (imputed)	N
1454	chr9	113912552	113912553	rs10980797	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	9q31.3	NA	rs10980797-A	0.5194	4E-15		0.0154	[0.011-0.019] unit decrease	NR [~ 27400000] (imputed)	N
1454	chr9	113912552	113912553	rs10980797	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	9q31.3	NR	rs10980797-A	0.5194	4E-15		0.0154	[0.011-0.019] unit decrease	NR [~ 27400000] (imputed)	N
1454	chr9	113912552	113912553	rs10980797	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Monocyte count	62,076 Japanese ancestry individuals	NA	9q31.3	LPAR1, MIR7702	rs10980797-?	NR	9E-16		0.06466	[0.049-0.08] unit decrease novel	Illumina [6108953] (imputed)	N
1454	chr9	113912552	113912553	rs10980797	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	9q31.3	RP11-202G18.1	rs10980797-G	0.4898	1E-296		0.1313061	[0.12-0.14] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1454	chr9	113912552	113912553	rs10980797	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	9q31.3	RP11-202G18.1	rs10980797-G	0.4897	1E-312		0.1351822	[0.13-0.14] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1454	chr9	113912552	113912553	rs10980797	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	9q31.3	RP11-202G18.1	rs10980797-G	0.4898	1E-219		0.1131494	[0.11-0.12] unit increase	Affymetrix [~ 2500000] (imputed)	N
1454	chr9	113912559	113912560	rs12339013	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	9q31.3	RP11-202G18.1	rs12339013-G	0.225454	1E-156		0.08972011	[0.083-0.096] unit increase	Affymetrix [93095623] (imputed)	N
1454	chr9	113915528	113915529	rs10980799	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	9q31.3	RP11-202G18.1	rs10980799-C	0.225553	1E-131		0.08082127	[0.074-0.087] unit increase	Affymetrix [93095623] (imputed)	N
1454	chr9	113915904	113915905	rs10980800	28193307	Lin BD	2017-02-14	Twin Res Hum Genet	Heritability and GWAS Studies for Monocyte-Lymphocyte Ratio.	Monocyte count	5,892 Dutch ancestry individuals	NA	9q31.3	EDG2, LPAR1	rs10980800-?	NR	1E-14				Affymetrix, Illumina, Perlegen [5987253] (imputed)	N
1454	chr9	113915904	113915905	rs10980800	25096241	Keller MF	2014-08-05	Hum Mol Genet	Trans-ethnic meta-analysis of white blood cell phenotypes.	Monocyte count	9,810 Japanese ancestry individuals, 16,550 European ancestry individuals, 7,369 African American individuals	NA	9q31.3	intergenic	rs10980800-C	0.769	1E-14	(EA)	0.044	[0.032-0.056] unit increase	Illumina [NR] (imputed)	N
1454	chr9	113915904	113915905	rs10980800	21738480	Nalls MA	2011-07-01	PLoS Genet	Multiple loci are associated with white blood cell phenotypes.	White blood cell count	19,509 European ancestry individuals	11,823 European ancestry individuals	9q31.3	OR2K2, EDG2	rs10980800-T		2E-22	(Monocytes)	0.042	[0.034-0.050] unit decrease	Affymetrix, Illumina [> 2400000] (imputed)	N
1454	chr9	113918855	113918856	rs10980802	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	7,043 South Asian ancestry individuals	NA	9q31.3	NR	rs10980802-A	0.62366	2E-9		0.0967185	[0.065-0.128] SD units increase	Affymetrix, Illumina [28465834] (imputed)	N
1454	chr9	113918855	113918856	rs10980802	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	9q31.3	NR	rs10980802-G	0.49	2E-18		0.016	[0.012-0.02] unit increase	Affymetrix [2446094] (imputed)	N
1454	chr9	113918855	113918856	rs10980802	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	9q31.3	NR	rs10980802-G	0.49	5E-8				Affymetrix [2446094] (imputed)	N
1454	chr9	113918855	113918856	rs10980802	28031487	Guo MH	2016-12-28	Proc Natl Acad Sci U S A	Comprehensive population-based genome sequencing provides insight into hematopoietic regulatory mechanisms.	Monocyte count	5,533 European ancestry individuals	NA	9q31.3	LPAR1	rs10980802-?	0.491	5E-11		0.02	[NR] 1,000/?L decrease	NR [16536512] (imputed)	N
1454	chr9	113920598	113920599	rs12346772	25096241	Keller MF	2014-08-05	Hum Mol Genet	Trans-ethnic meta-analysis of white blood cell phenotypes.	Monocyte count	9,810 Japanese ancestry individuals, 16,550 European ancestry individuals, 7,369 African American individuals	NA	9q31.3	NR	rs12346772-?	NR	1E-10		0.0226	[0.016-0.029] unit decrease	Illumina [NR] (imputed)	N
1454	chr9	113922642	113922643	rs74355589	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	334,468 European ancestry, NR ancestry individuals	NA	9q31.3		rs74355589-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1454	chr9	113922642	113922643	rs74355589	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	9q31.3		rs74355589-C	0.983	5E-15				Affymetrix [10369434] (imputed)	N
1454	chr9	113924452	113924453	rs56010415	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	9q31.3		rs56010415-C	0.981	6E-9				Affymetrix [10369434] (imputed)	N
1454	chr9	113924516	113924517	rs7034139	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	9q31.3	RP11-202G18.1	rs7034139-A	0.2264	1E-13		0.03185962	[0.023-0.04] unit increase	Affymetrix [~ 2500000] (imputed)	N
1454	chr9	113925641	113925642	rs12344280	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	9q31.3	RP11-202G18.1	rs12344280-A	0.2259	7E-13		0.03071569	[0.022-0.039] unit increase	Affymetrix [~ 2500000] (imputed)	N
1454	chr9	113926870	113926870	rs563072220	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	9q31.3	RP11-202G18.1	rs563072220-TA	0.253622	2E-10		0.01907651	[0.013-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1454	chr9	113926870	113926870	rs563072220	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	9q31.3	RP11-202G18.1	rs563072220-TA	0.253645	2E-9		0.015651023	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1454	chr9	113936018	113936019	rs77400178	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	9q31.3		rs77400178-G	0.985	4E-8				Affymetrix [10369434] (imputed)	N
1454	chr9	113936615	113936616	rs72761341	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	334,468 European ancestry, NR ancestry individuals	NA	9q31.3		rs72761341-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1454	chr9	113936918	113936919	rs62569723	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	9q31.3	RP11-202G18.1	rs62569723-G	0.2256	9E-273		0.1509513	[0.14-0.16] unit increase	Affymetrix [~ 2500000] (imputed)	N
1454	chr9	113940716	113940717	rs17812273	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	9q31.3	RP11-202G18.1	rs17812273-C	NR	2E-11		0.0202301	[0.014-0.026] unit increase	Affymetrix [319769] (imputed)	N
1454	chr9	113940716	113940717	rs17812273	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	9q31.3	RP11-202G18.1	rs17812273-C	NR	5E-11		0.0197551	[0.014-0.026] unit increase	Affymetrix [319769] (imputed)	N
1454	chr9	113941669	113941670	rs10123393	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	9q31.3	RP11-202G18.1	rs10123393-C	0.2243	5E-253		0.1452798	[0.14-0.15] unit increase	Affymetrix [~ 2500000] (imputed)	N
1454	chr9	113941669	113941670	rs10123393	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	9q31.3	RP11-202G18.1	rs10123393-C	0.2244	2E-185		0.1244978	[0.12-0.13] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1454	chr9	113945066	113945067	rs2150052	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	9q31.3	RP11-202G18.1	rs2150052-T	0.50544	1E-9		0.013592685	[0.0092-0.018] unit decrease	Affymetrix [93095623] (imputed)	N
1454	chr9	113945066	113945067	rs2150052	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q31.3	NR	rs2150052-T	0.460548	3E-9				Affymetrix, Illumina [19905671] (imputed)	N
1454	chr9	113945066	113945067	rs2150052	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	9q31.3	NR	rs2150052-T	0.50554	9E-11		0.013303	[0.0093-0.0173] SD unit decrease	Affymetrix, Illumina [50036608] (imputed)	N
1454	chr9	113945066	113945067	rs2150052	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	9q31.3	RP11-202G18.1	rs2150052-T	0.5063	3E-10		0.02252225	[0.016-0.03] unit increase	Affymetrix [~ 2500000] (imputed)	N
1454	chr9	113945066	113945067	rs2150052	27680694	Horikoshi M	2016-10-13	Nature	Genome-wide associations for birth weight and correlations with adult disease.	Birth weight	133,903 European ancestry individuals, 6,635 African American individuals, 420 Turkish ancestry individuals, 365 Moroccan ancestry individuals, 395 Surinamese ancestry individuals, 840 Chinese ancestry individuals.	9,799 European ancestry individuals, 1,449 Filipino ancestry individuals.	9q31.3	LPAR1	rs2150052-T	0.5	3E-8		0.0203	[0.013-0.028] unit increase	Affymetrix, Illumina [at least 22434434] (imputed)	N
1454	chr9	113945530	113945531	rs144641731	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9q31.3		rs144641731-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1454	chr9	113945615	113945615	rs200243293	28158719	Jain D	2017-02-01	Hum Mol Genet	Genome-wide association of white blood cell counts in Hispanic/Latino Americans: the Hispanic Community Health Study/Study of Latinos.	White blood cell count (monocyte)	up to 11,809 Hispanic/Latino American individuals	up to 7,200 Hispanic/Latino American individuals	9q31.3	LPAR1	rs200243293-T	0.659	4E-8		0.0085	[0.0054-0.0116] unit increase	Illumina [27887661] (imputed)	N
1454	chr9	113945619	113945620	rs115162333	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	9q31.3		rs115162333-G	NR	4E-569		0.1184	[0.11-0.12] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
1454	chr9	113945619	113945620	rs115162333	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	9q31.3	RP11-202G18.1	rs115162333-G	NR	4E-17		0.023898	[0.018-0.029] unit increase	Affymetrix [319769] (imputed)	N
1454	chr9	113945619	113945620	rs115162333	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	9q31.3	RP11-202G18.1	rs115162333-G	NR	6E-17		0.0237713	[0.018-0.029] unit increase	Affymetrix [319769] (imputed)	N
1454	chr9	113945619	113945620	rs115162333	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	9q31.3	RP11-202G18.1	rs115162333-G	0.489954	3E-25		0.023107521	[0.019-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1454	chr9	113947678	113947679	rs12339126	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	334,468 European ancestry, NR ancestry individuals	NA	9q31.3		rs12339126-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1454	chr9	113947678	113947679	rs12339126	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	9q31.3		rs12339126-T	0.597	3E-61				Affymetrix [10369434] (imputed)	N
1454	chr9	113949105	113949106	rs118179573	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	9q31.3		rs118179573-A	0.983	4E-22				Affymetrix [10369434] (imputed)	N
1454	chr9	113950882	113950883	rs28430334	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	9q31.3		rs28430334-A	0.606	3E-51				Affymetrix [10369434] (imputed)	N
1454	chr9	113953993	113953994	rs17207368	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	9q31.3		rs17207368-G	0.969	8E-13				Affymetrix [10369434] (imputed)	N
1454	chr9	113953993	113953994	rs17207368	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	9q31.3	RP11-202G18.1	rs17207368-A	0.031397	6E-20		0.061488837	[0.048-0.075] unit increase	Affymetrix [93095623] (imputed)	N
1454	chr9	113953993	113953994	rs17207368	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	9q31.3	RP11-202G18.1	rs17207368-A	0.0312	7E-18		0.08950687	[0.069-0.11] unit increase	Affymetrix [~ 2500000] (imputed)	N
1454	chr9	113953993	113953994	rs17207368	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	9q31.3	RP11-202G18.1	rs17207368-A	0.0312	3E-16		0.08502299	[0.065-0.105] unit increase	Affymetrix [~ 2500000] (imputed)	N
1454	chr9	113953993	113953994	rs17207368	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	9q31.3	RP11-202G18.1	rs17207368-A	0.0311	2E-13		0.07655925	[0.056-0.097] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1454	chr9	113967409	113967410	rs12345486	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	9q31.3	RP11-202G18.1	rs12345486-A	NR	3E-10		0.019011	[0.013-0.025] unit decrease	Affymetrix [321016] (imputed)	N
1454	chr9	113985534	113985535	rs143302730	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	9q31.3		rs143302730-T	0.966	1E-9				Affymetrix [10369434] (imputed)	N
1454	chr9	114002027	114002028	rs17227559	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	9q31.3		rs17227559-C	0.986	6E-13				Affymetrix [10369434] (imputed)	N
1454	chr9	114012571	114012572	rs62571883	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	9q31.3	NR	rs62571883-C	0.146469	7E-431		0.117607	[0.11-0.12] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
1454	chr9	114016773	114016774	rs12343930	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	9q31.3	RP11-202G18.1	rs12343930-C	NR	1E-8		0.0168015	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
1454	chr9	114016773	114016774	rs12343930	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	9q31.3	RP11-202G18.1	rs12343930-C	NR	3E-8		0.0162094	[0.01-0.022] unit increase	Affymetrix [319769] (imputed)	N
1454	chr9	114020281	114020282	rs117318847	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	9q31.3		rs117318847-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1454	chr9	114029289	114029290	rs118138414	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	9q31.3		rs118138414-C	0.95	8E-31				Affymetrix [10369434] (imputed)	N
1455	chr9	114034829	114034830	rs112219838	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q31.3	NR	rs112219838-T	0.105628	4E-340				Affymetrix, Illumina [23467995] (imputed)	N
1455	chr9	114039154	114039155	rs148166152	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	9q31.3	RP11-202G18.1	rs148166152-G	0.0354370000000001	2E-16		0.050940152	[0.039-0.063] unit increase	Affymetrix [93095623] (imputed)	N
1455	chr9	114043547	114043548	rs12346925	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	9q31.3	RP11-202G18.1	rs12346925-T	NR	3E-8		0.0157941	[0.01-0.021] unit increase	Affymetrix [319769] (imputed)	N
1455	chr9	114050356	114050357	rs10980854	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	9q31.3	ZNF483, OR2K2	rs10980854-A	0.06	1E-8		0.06	[0.038-0.082] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
1455	chr9	114057474	114057475	rs72607186	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	48,454 European ancestry individuals	NA	9q31.3	OR2K2	rs72607186-A	0.0458	2E-6		0.0657	[0.039-0.093] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1455	chr9	114057474	114057475	rs72607186	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	2,516 African American individuals, 48,454 European ancestry individuals	NA	9q31.3	OR2K2	rs72607186-A	0.0458	4E-6		0.0657	[0.038-0.094] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1455	chr9	114074995	114074996	rs118059175	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	334,468 European ancestry, NR ancestry individuals	NA	9q31.3		rs118059175-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1455	chr9	114074995	114074996	rs118059175	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	9q31.3		rs118059175-A	0.985	5E-16				Affymetrix [10369434] (imputed)	N
1455	chr9	114078715	114078716	rs2095108	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	9q31.3	KIAA0368	rs2095108-?	NR	8E-6	(kynurenine)	0.18946159	[0.11-0.27] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1455	chr9	114080908	114080909	rs314460	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	9q31.3		rs314460-C	0.632228	1E-9		0.01412441	[0.0096-0.0187] unit decrease	Affymetrix [93095623] (imputed)	N
1455	chr9	114151246	114151247	rs184716813	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Squamous cell lung carcinoma	7,426 European ancestry cases, 55,627 European ancestry controls	NA	9q31.3	KIAA0368	rs184716813-C	0.019177004	5E-6		1.3907048	[1.207670898-1.601479085]	Illumina [10439017] (imputed)	N
1456	chr9	114189440	114189440	rs34971252	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	9q31.3	KIAA0368	rs34971252-GA	0.735863	1E-9		0.016058018	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1456	chr9	114193608	114193609	rs144875739	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PTGR1	5,364 Icelandic ancestry individuals	NA	9q31.3		rs144875739-A	0.01688	2E-48		1.05684	[0.92-1.2] unit decrease	Illumina [7506463] (imputed)	N
1456	chr9	114193608	114193609	rs144875739	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q31.3	NR	rs144875739-A	0.022	2E-31	(Prostaglandin reductase 1, PTGR1.13543.7.3)	0.97	[0.81-1.13] unit decrease	Affymetrix [10572788] (imputed)	N
1456	chr9	114279911	114279912	rs10980921	29773799	Horikoshi M	2018-05-17	Nat Commun	Elucidating the genetic architecture of reproductive ageing in the Japanese population.	Menarche (age at onset)	67,029 Japanese ancestry women	73,397 European ancestry women	9q31.3	NR	rs10980921-T	0.7794	1E-7	(Japanese)	0.056	[0.034-0.078] year decrease	Illumina [at least 532488] (imputed)	N
1456	chr9	114279911	114279912	rs10980921	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	9q31.3	ZNF483, OR2K2	rs10980921-C	0.09	2E-23		0.09	[0.072-0.108] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
1456	chr9	114280867	114280868	rs10980922	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (late vs. average onset facial hair)	26,066 European ancestry late onset individuals, 161,175 European ancestry average onset individuals	NA	9q31.3		rs10980922-T	NR	2E-8		0.0114968	[0.0075-0.0155] years increase	NR [7400000] (imputed)	N
1456	chr9	114280867	114280868	rs10980922	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (early vs. average onset voice breaking)	8,245 European ancestry early onset individuals, 172,138 European ancestry average onset individuals	NA	9q31.3		rs10980922-T	NR	2E-7		0.00672792	[0.0042-0.0092] years decrease	NR [7400000] (imputed)	N
1456	chr9	114280867	114280868	rs10980922	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (early vs. average onset facial hair)	13,226 European ancestry early onset individuals, 161,175 European ancestry average onset individuals	NA	9q31.3		rs10980922-T	NR	8E-8		0.00896617	[0.0057-0.0122] years decrease	NR [7400000] (imputed)	N
1456	chr9	114280867	114280868	rs10980922	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (age at voice breaking MTAG)	205,354 European ancestry individuals	NA	9q31.3		rs10980922-T	NR	7E-22		0.055374537	[0.044-0.067] years increase	NR [7400000] (imputed)	N
1456	chr9	114280867	114280868	rs10980922	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Age at voice drop	55,871 European ancestry individuals	NA	9q31.3	KIAA0368, ZNF483	rs10980922-?	NR	1E-7		0.052	[0.033-0.072] unit increase	Illumina [12039491]	N
1456	chr9	114283835	114283836	rs59048466	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	9q31.3		rs59048466-G	0.220198	3E-15		0.0190842	[0.014-0.024] unit increase	Illumina [13479295] (imputed)	N
1456	chr9	114287424	114287425	rs7036399	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	9q31.3	ZNF483	rs7036399-?	NR	2E-20		0.030759577	[0.024-0.037] unit increase	Illumina [27896057] (imputed)	N
1456	chr9	114293633	114293634	rs10980926	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9q31.3		rs10980926-?	NR	6E-25				NR [~ 8900000] (imputed)	N
1456	chr9	114293633	114293634	rs10980926	23449627	Cousminer DL	2013-02-27	Hum Mol Genet	Genome-wide association and longitudinal analyses reveal genetic loci linking pubertal height growth, pubertal timing and childhood adiposity.	Pubertal anthropometrics	up to 5,043 European ancestry males, up to 5,756 European ancestry females	NA	9q31.3	ZNF483	rs10980926-G	0.65	3E-6	(Pubertal growth,males)	0.1	[0.059-0.141] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1456	chr9	114293633	114293634	rs10980926	23449627	Cousminer DL	2013-02-27	Hum Mol Genet	Genome-wide association and longitudinal analyses reveal genetic loci linking pubertal height growth, pubertal timing and childhood adiposity.	Pubertal anthropometrics	up to 5,043 European ancestry males, up to 5,756 European ancestry females	NA	9q31.3	ZNF483	rs10980926-G	0.65	2E-7	(Pubertal growth)	0.07	[0.043-0.097] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1456	chr9	114293633	114293634	rs10980926	21102462	Elks CE	2010-11-21	Nat Genet	Thirty new loci for age at menarche identified by a meta-analysis of genome-wide association studies.	Menarche (age at onset)	86,142 European ancestry female individuals, 557 Old Order Amish (founder/genetic isolate) female individuals, 1,103 Erasmus Rucphen (founder/genetic isolate) female individuals	Up to 12,813 European ancestry female individuals, 910 Val Borbera (founder/genetic isolate) female individuals, 348 Orcadian (founder/genetic isolate) female individuals, 338 Friuli Venezia Giulia (founder/genetic isolate) female individuals, 322 Carlantino (founder/genetic/isolate) female individuals	9q31.3	ZNF483	rs10980926-A	0.36	4E-11		2.5	[1.72-3.28] week increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1457	chr9	114298363	114298364	rs74913239	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	9q31.3	ZNF483	rs74913239-G	0.840884	2E-9		0.016129	[0.011-0.021] unit increase	Affymetrix [NR] (imputed)	N
1457	chr9	114301584	114301585	rs10441737	23599027	Demerath EW	2013-04-17	Hum Mol Genet	Genome-wide association study of age at menarche in African-American women.	Menarche (age at onset)	18,089 African American individuals	2,850 African American individuals, 87,802 European ancestry inidividuals	9q31.3	ZNF483	rs10441737-T	.64	4E-15	(EA)	2.777	[4.31-5.94] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1457	chr9	114303678	114303679	rs7873730	23599027	Demerath EW	2013-04-17	Hum Mol Genet	Genome-wide association study of age at menarche in African-American women.	Menarche (age at onset)	18,089 African American individuals	2,850 African American individuals, 87,802 European ancestry inidividuals	9q31.3	ZNF483	rs7873730-A	0.88	2E-6	(AA)	6.82	[4.00-9.64] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1457	chr9	114303831	114303832	rs75822146	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9q31.3	NR	rs75822146-A	0.0453	1E-10	(PTGR1)	0.8775	NR unit increase	Illumina [1671387] (imputed)	N
1457	chr9	114307410	114307411	rs73656261	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	9q31.3		rs73656261-G	0.901	9E-19				Affymetrix [10369434] (imputed)	N
1457	chr9	114309934	114309935	rs10217747	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Menarche (age at onset)	76,831 European ancestry individuals	NA	9q31.3	ZNF483, PTGR1	rs10217747-?	NR	2E-8		0.025	[0.017-0.034] unit increase	Illumina [12039492]	N
1457	chr9	114318393	114318394	rs7852169	34021356	Sarnowski C	2021-05-22	Hum Reprod	Large trans-ethnic meta-analysis identifies AKR1C4 as a novel gene associated with age at menarche.	Menarche (age at onset)	19,028 African ancestry individuals, 3,205 South Asian ancestry individuals, 2,095 East Asian ancestry individuals, 10,661 Hispanic/Latina individuals, 3,557 individuals	NA	9q31.3	NR	rs7852169-C	0.79	1E-8		0.09	[0.051-0.129] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1457	chr9	114318393	114318394	rs7852169	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (late vs. average onset facial hair)	26,066 European ancestry late onset individuals, 161,175 European ancestry average onset individuals	NA	9q31.3		rs7852169-G	NR	2E-8		0.0113429	[0.0074-0.0153] years increase	NR [7400000] (imputed)	N
1457	chr9	114318393	114318394	rs7852169	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (early vs. average onset voice breaking)	8,245 European ancestry early onset individuals, 172,138 European ancestry average onset individuals	NA	9q31.3		rs7852169-G	NR	1E-7		0.00678679	[0.0043-0.0093] years decrease	NR [7400000] (imputed)	N
1457	chr9	114318393	114318394	rs7852169	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (early vs. average onset facial hair)	13,226 European ancestry early onset individuals, 161,175 European ancestry average onset individuals	NA	9q31.3		rs7852169-G	NR	1E-7		0.00878835	[0.0056-0.0120] years decrease	NR [7400000] (imputed)	N
1457	chr9	114318393	114318394	rs7852169	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	9q31.3		rs7852169-?	NR	4E-42				NR [~ 8900000] (imputed)	N
1457	chr9	114318393	114318394	rs7852169	29773799	Horikoshi M	2018-05-17	Nat Commun	Elucidating the genetic architecture of reproductive ageing in the Japanese population.	Menopause (age at onset)	43,861 Japanese ancestry women	32,545 European ancestry women	9q31.3	NR	rs7852169-C	0.76	9E-7	(Japanese)	0.052	[0.03-0.074] year decrease	Illumina [at least 532488] (imputed)	N
1457	chr9	114323463	114323463	rs1174906012	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9q31.3	NR	rs1174906012-A	0.08362	2E-8	(PTGR1)	0.5533	NR unit increase	Illumina [1671387] (imputed)	N
1457	chr9	114324947	114324948	rs7858562	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	9q31.3	PTGR1, ZNF483	rs7858562-?	NR	4E-7		0.018303337	[0.011-0.025] unit decrease	Illumina [27896057] (imputed)	N
1457	chr9	114325818	114325819	rs111703901	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PTGR1	5,364 Icelandic ancestry individuals	NA	9q31.3		rs111703901-C	0.04862	8E-75		0.779804	[0.7-0.86] unit increase	Illumina [7506463] (imputed)	N
1457	chr9	114325848	114325849	rs112140014	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	9q31.3	PTGR1	rs112140014-G	0.9521875	2E-38	(PTGR1, 13543_7_3)	0.7258096	[0.62-0.83] unit decrease	Illumina [> 1000000] (imputed)	N
1457	chr9	114333127	114333128	rs74308680	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9q31.3	NR	rs74308680-G	0.0662	3E-9	(PTGR1)	0.7009	NR unit decrease	Illumina [1671387] (imputed)	N
1457	chr9	114333326	114333327	rs72748040	34239500	Livingstone KM	2021-06-22	Front Endocrinol (Lausanne)	Discovery Genome-Wide Association Study of Body Composition in 4,386 Adults From the UK Biobank's Pilot Imaging Enhancement Study.	Gynoid bone mass	2,109 White British ancestry male individuals	NA	9q31.3		rs72748040-A	NR	3E-8		26.29	g increase	NR [6137607] (imputed)	N
1457	chr9	114335344	114335345	rs77928057	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9q31.3	NR	rs77928057-C	0.03659	3E-10	(PTGR1)	0.949	NR unit increase	Illumina [1671387] (imputed)	N
1457	chr9	114343375	114343376	rs12555931	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	9q31.3		rs12555931-G	0.743	1E-49				Affymetrix [10369434] (imputed)	N
1457	chr9	114343375	114343376	rs12555931	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	9q31.3		rs12555931-G	0.743	3E-50				Affymetrix [10369434] (imputed)	N
1457	chr9	114348616	114348617	rs2273788	23314186	Crosslin DR	2013-03-03	Hum Mol Genet	Genetic variation associated with circulating monocyte count in the eMERGE Network.	Monocyte count	9,849 European ancestry individuals, 894 African ancestry individuals, 271 individuals	NA	9q31.3	PTGR1	rs2273788-A	0.26	5E-7		0.16	unit increase	Illumina [NR]	N
1457	chr9	114349400	114349401	rs117065036	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Intake of sweets	21,447 European ancestry individuals	NA	9q31.3	PTGR1	rs117065036-C	0.02	3E-7		0.19	[0.11-0.27] handful of candies/day increase	Affymetrix [10353649] (imputed)	N
1457	chr9	114366722	114366723	rs74372251	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9q31.3	NR	rs74372251-G	0.01394	4E-9	(CCDC58)	0.01239	NR unit decrease	Illumina [1671387] (imputed)	N
1457	chr9	114366958	114366959	rs10980960	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	334,468 European ancestry, NR ancestry individuals	NA	9q31.3		rs10980960-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1457	chr9	114367122	114367123	rs59773154	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PTGR1	5,364 Icelandic ancestry individuals	NA	9q31.3		rs59773154-A	0.1979	1E-41		0.315507	[0.27-0.36] unit decrease	Illumina [7506463] (imputed)	N
1457	chr9	114367122	114367123	rs59773154	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q31.3	NR	rs59773154-A	0.166	2E-24	(Prostaglandin reductase 1, PTGR1.13543.7.3)	0.34	[0.28-0.4] unit decrease	Affymetrix [10572788] (imputed)	N
1457	chr9	114374273	114374274	rs57669363	34212547	An J	2021-07-01	Allergy Asthma Immunol Res	Genome-Wide Association Study of Korean Asthmatics: A Comparison With UK Asthmatics.	Adult asthma	1,386 Korean ancestry cases, 5,205 Korean ancestry controls	NA	9q31.3		rs57669363-A	0.39	3E-6		1.23	[1.13-1.34]	Affymetrix [4922160] (imputed)	N
1457	chr9	114376752	114376753	rs2418173	31647587	Willems EL	2019-10-24	Genet Epidemiol	Transethnic meta-analysis of metabolic syndrome in a multiethnic study.	Diastolic blood pressure	281 African American individuals from 73 families, 516 European American individuals from 75 families, 125 East Asian ancestry individuals from 15 families, 598 Mexican American individuals from 96 families	NA	9q31.3	LRRC37A5P	rs2418173-?	NR	3E-7	(TransMeta)			Illumina [3153931] (imputed)	N
1457	chr9	114379300	114379301	rs571025325	34951656	Downie CG	2021-12-24	Diabetologia	Multi-ethnic GWAS and fine-mapping of glycaemic traits identify novel loci in the PAGE Study.	Fasting glucose adjusted for BMI	52,211 European ancestry, African American or Afro-Caribbean, Hispanic or Latin American, Asian ancestry, Other ancestry, Native American ancestry individuals	NA	9q31.3		rs571025325-A	0.0014	3E-8		0.8032	[0.52-1.09] unit increase	Affymetrix, Illumina [29259056] (imputed)	N
1457	chr9	114379300	114379301	rs571025325	34951656	Downie CG	2021-12-24	Diabetologia	Multi-ethnic GWAS and fine-mapping of glycaemic traits identify novel loci in the PAGE Study.	Fasting glucose adjusted for BMI	12,195 African American or Afro-Caribbean individuals	NA	9q31.3		rs571025325-A	0.0037	5E-9		1.0856	[0.72-1.45] unit increase	Affymetrix, Illumina [29259056] (imputed)	N
1457	chr9	114387134	114387135	rs7875749	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,931 Sub-Saharan African ancestry males	NA	9q31.3		rs7875749-A	0.442305	4E-6		0.0125672	[0.0072-0.018] unit increase	Illumina [13900000] (imputed)	N
1457	chr9	114392297	114392297	rs148410779	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q31.3	PTGR1	rs148410779-AT	0.053	2E-32	(Prostaglandin reductase 1, PTGR1.13543.7.3)	0.64	[0.54-0.74] unit increase	Affymetrix [10572788] (imputed)	N
1457	chr9	114406997	114406998	rs35330791	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	9q31.3		rs35330791-G	0.93	1E-9				Affymetrix [10369434] (imputed)	N
1457	chr9	114423432	114423433	rs4979031	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	9q31.3		rs4979031-G	0.725	6E-28				Affymetrix [10369434] (imputed)	N
1457	chr9	114423432	114423433	rs4979031	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	9q31.3		rs4979031-G	0.725	6E-31				Affymetrix [10369434] (imputed)	N
1458	chr9	114453005	114453006	rs10981012	26708285	Wakil SM	2016-02-01	Atherosclerosis	A genome-wide association study reveals susceptibility loci for myocardial infarction/coronary artery disease in Saudi Arabs.	Coronary artery disease	2,165 Saudi Arab ancestry cases, 2,266 Saudi Arab ancestry controls	503 Saudi Arab ancestry cases, 734 Saudi Arab ancestry controls	9q31.3	C9orf84	rs10981012-A	0.13	1E-9		1.34	[NR]	Affymetrix [537798]	N
1458	chr9	114494806	114494807	rs7044465	32568366	Raghavan NS	2020-06-22	JAMA Neurol	Association Between Common Variants in RBFOX1, an RNA-Binding Protein, and Brain Amyloidosis in Early and Preclinical Alzheimer Disease.	Brain amyloid deposition (PET imaging)	4,120 Europea ancestry individuals, 89 African American individuals, 105 Hispanic individuals	NA	9q31.3	NR	rs7044465-T		8E-6		0.2544	[0.14-0.37] unit increase	Illumina [NR] (imputed)	N
1459	chr9	114574190	114574191	rs192306725	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Deep white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	9q31.3	intergenic	rs192306725-A	0.9832	2E-6		0.1709	[0.1-0.24] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1459	chr9	114599047	114599048	rs4978466	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	9q31.3		rs4978466-A	NR	3E-8		0.0143	[0.0092-0.0194] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
1459	chr9	114599047	114599048	rs4978466	32699080	Brhane Y	2020-07-22	Cancer Epidemiol Biomarkers Prev	Genetic determinants of lung cancer prognosis in never smokers: A pooled analysis in the International Lung Cancer Consortium.	Lung cancer (survival time) in never smokers	1,569 European ancestry individuals	887 Japanese ancestry individuals	9q31.3	intergenic	rs4978466-A	NR	5E-7	(EA)	0.76	[0.69-0.85]	Illumina [629283] (imputed)	N
1459	chr9	114603239	114603240	rs1547308	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	9q31.3	NR	rs1547308-C	0.799509	7E-15		0.0123006	[0.0091-0.0155] unit increase	Affymetrix [16578495] (imputed)	N
1459	chr9	114603239	114603240	rs1547308	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	9q31.3	NR	rs1547308-C	0.800022	9E-21		0.0322875	[0.025-0.039] unit increase	Affymetrix [16580851] (imputed)	N
1459	chr9	114647372	114647373	rs76769539	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Superior parietal cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	9q31.3	NR	rs76769539-?		9E-6				Illumina [4322238] (imputed)	N
1459	chr9	114653691	114653691	rs113316030	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	9q31.3	NR	rs113316030-GATTTA	0.357525	7E-11		0.015228889	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1459	chr9	114653691	114653691	rs113316030	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	9q31.3		rs113316030-GATTTA	0.357556	6E-11		0.015244937	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1459	chr9	114653691	114653691	rs113316030	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	9q31.3	NR	rs113316030-I	0.357425	2E-11		0.014585	[0.01-0.019] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
1459	chr9	114657706	114657707	rs7866863	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	9q31.3		rs7866863-A	NR	1E-10		0.0141	[0.0098-0.0184] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
1459	chr9	114657706	114657707	rs7866863	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	9q31.3		rs7866863-?	NR	3E-13				NR [~ 8900000] (imputed)	N
1459	chr9	114663384	114663385	rs148125759	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	9q31.3	UGCG	rs148125759-C	0.012993	5E-44		0.13797316	[0.12-0.16] unit increase	Affymetrix [93095623] (imputed)	N
1459	chr9	114663384	114663385	rs148125759	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q31.3	NR	rs148125759-T	0.986257	4E-47				Affymetrix, Illumina [22063850] (imputed)	N
1459	chr9	114663384	114663385	rs148125759	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	9q31.3	NR	rs148125759-T	0.986223	1E-48		0.120732	[0.1-0.14] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
1459	chr9	114663384	114663385	rs148125759	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	9q31.3		rs148125759-?	NR	5E-43				NR [~ 8900000] (imputed)	N
1459	chr9	114663384	114663385	rs148125759	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	9q31.3		rs148125759-?	NR	8E-15				NR [~ 8900000] (imputed)	N
1459	chr9	114663384	114663385	rs148125759	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	9q31.3		rs148125759-?	NR	2E-17				NR [~ 8900000] (imputed)	N
1459	chr9	114686304	114686305	rs144721045	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	9q31.3	UGCG	rs144721045-A	0.013589	2E-16		0.079136685	[0.06-0.098] unit decrease	Affymetrix [93095623] (imputed)	N
1459	chr9	114686304	114686305	rs144721045	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q31.3	NR	rs144721045-T	0.985867	2E-18				Affymetrix, Illumina [24332387] (imputed)	N
1459	chr9	114686304	114686305	rs144721045	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	9q31.3	NR	rs144721045-T	0.985802	3E-21		0.073909	[0.059-0.089] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
1459	chr9	114686304	114686305	rs144721045	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	9q31.3	NR	rs144721045-T	0.986155	3E-20		0.077069	[0.061-0.093] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
1459	chr9	114686304	114686305	rs144721045	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	9q31.3	UGCG	rs144721045-A	NR	3E-13		0.124208	[0.09-0.158] unit increase	Affymetrix [16832071] (imputed)	N
1459	chr9	114686304	114686305	rs144721045	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	9q31.3	UGCG	rs144721045-A	0.014	4E-18		0.1336079	[0.1-0.16] unit increase	Affymetrix [~ 2500000] (imputed)	N
1459	chr9	114686887	114686888	rs140507754	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	9q31.3	UGCG	rs140507754-T	0.012871	8E-16		0.079578355	[0.06-0.099] unit increase	Affymetrix [93095623] (imputed)	N
1459	chr9	114686887	114686888	rs140507754	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	9q31.3	NR	rs140507754-C	0.986919	1E-19		0.075293	[0.059-0.092] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1460	chr9	114702728	114702729	rs150425398	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	9q31.3		rs150425398-T	0.012899	2E-14		0.0763158	[0.058-0.094] unit decrease	Affymetrix [93095623] (imputed)	N
1460	chr9	114719567	114719568	rs190531342	28498854	Liang J	2017-05-12	PLoS Genet	Single-trait and multi-trait genome-wide association analyses identify novel loci for blood pressure in African-ancestry populations.	Blood pressure traits (multi-trait analysis)	Up to 31,155 African individuals	Up to 4,187 African individuals, up to 14,016 Korean ancestry individuals, up to 23,914 European ancestry individuals, up to 12,278 Hispanic individuals	9q31.3	NR	rs190531342-?	NR	2E-6	(Hom)			Affymetrix, Illumina [at least 30072738] (imputed)	N
1460	chr9	114730983	114730984	rs11793639	30988330	Hellwege JN	2019-04-15	Sci Rep	Heritability and genome-wide association study of benign prostatic hyperplasia (BPH) in the eMERGE network.	Benign prostatic hyperplasia	2,258 European ancestry cases, 398 African and unknown ancestry cases, 6,599 European ancestry controls, 1,164 African and unknown ancestry controls	NA	9q31.3	UGCG, MIR3134	rs11793639-?	0.77	2E-6	(EA)	1.2345679	[1.11-1.37]	Affymetrix, Illumina [10973920] (imputed)	N
1460	chr9	114733726	114733727	rs79796702	34387878	Kim KY	2021-08-13	Hepatology	Genome-wide association of individual vulnerability with alcoholic liver disease: A Korean Genome and Epidemiology Study.	Alcohol-associated liver disease in heavy drinkers	1,185 Korean ancestry cases, 2,246 Korean ancestry controls	NA	9q31.3		rs79796702-?	NR	5E-6		2.263	[1.595-3.21]	Affymetrix [7975321] (imputed)	N
1460	chr9	114798036	114798037	rs10125054	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	9q31.3	SUSD1	rs10125054-A	0.302	4E-6	(Sedentary activity )	0.03	[NR] min/d increase	Illumina [899892]	N
1460	chr9	114803332	114803333	rs2281789	31271701	Thibord F	2019-07-04	J Thromb Haemost	A Genome Wide Association Study on plasma FV levels identified PLXDC2 as a new modifier of the coagulation process.	Plasma factor V levels in venous thrombosis (conditioned on rs6027)	510 European ancestry individuals	1,156 European ancestry individuals	9q31.3	SUSD1	rs2281789-?	NR	6E-6		0.123	[0.07-0.176] unit increase	NR [6264382] (imputed)	N
1460	chr9	114803332	114803333	rs2281789	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	9q31.3	UGCG	rs2281789-?	NR	2E-6	(3-phosphoglyceric acid)	0.36521077	[0.21-0.52] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1460	chr9	114805384	114805385	rs113021760	34311721	Alotaibi RN	2021-07-26	BMC Oral Health	Genome-Wide Association Study (GWAS) of dental caries in diverse populations.	Primary dental caries (decayed and filled teeth)	1,116 children	NA			rs113021760-?	NR	3E-9		2.67	unit decrease	Illumina [8859951] (imputed)	N
1460	chr9	114817523	114817524	rs10981237	33967749	Ooi BNS	2021-04-22	Front Pharmacol	Robust Performance of Potentially Functional SNPs in Machine Learning Models for the Prediction of Atorvastatin-Induced Myalgia.	Atorvastatin-induced myalgia	14 Chinese ancestry cases, 74 Chinese ancestry controls, 12 Indian ancestry cases, 45 Indian ancestry controls, 4 Malay ancestry cases, 34 Malay ancestry controls	NA			rs10981237-?	NR	7E-6		21.67	[5.675-82.76]	Illumina [4554532]	N
1461	chr9	114822157	114822158	rs79461840	30823506	Hong EP	2019-02-25	J Clin Med	Genomic Variations in Susceptibility to Intracranial Aneurysm in the Korean Population.	Intracranial aneurysm	250 Korean ancestry cases, 296 Korean ancestry controls	NA	9q31.3	SUSD1	rs79461840-C	0.02	1E-8		6.92	[3.55-13.49]	Affymetrix [508192]	N
1461	chr9	114823120	114823121	rs4979078	23650146	Tang W	2013-05-05	Genet Epidemiol	A genome-wide association study for venous thromboembolism: the extended cohorts for heart and aging research in genomic epidemiology (CHARGE) consortium.	Venous thromboembolism	1,618 European ancestry cases, 42,881 European ancestry controls	3,231 European ancestry cases, 3,536 European ancestry controls	9q31.3	SUSD1	rs4979078-C	0.86	3E-6		1.21	[1.11-1.30]	Affymetrix, Illumina [2543885] (imputed)	N
1461	chr9	114824707	114824708	rs4979080	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	9q31.3	SUSD1	rs4979080-C	0.299567	4E-10		0.015256528	[0.01-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1461	chr9	114824707	114824708	rs4979080	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	9q31.3	SUSD1	rs4979080-C	0.299584	1E-9		0.014847146	[0.01-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1461	chr9	114828331	114828332	rs10817260	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	9q31.3	NR	rs10817260-C	0.809755	7E-17		0.0137891	[0.011-0.017] unit increase	Affymetrix [16578495] (imputed)	N
1461	chr9	114828331	114828332	rs10817260	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	9q31.3	NR	rs10817260-C	0.809595	9E-35		0.0429746	[0.036-0.05] unit increase	Affymetrix [16580851] (imputed)	N
1461	chr9	114833003	114833003	rs149334379	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	9q31.3		rs149334379-CA	NR	7E-10		0.0253	[0.017-0.033] unit increase	Affymetrix, Illumina [20536605] (imputed)	N
1461	chr9	114834499	114834500	rs2762500	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	9q31.3		rs2762500-G	NR	4E-14		0.0157	[0.012-0.02] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
1461	chr9	114835494	114835495	rs2564906	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	9q31.3	SUSD1	rs2564906-A	0.095064	8E-15		0.029368194	[0.022-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
1461	chr9	114835494	114835495	rs2564906	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	9q31.3	SUSD1	rs2564906-A	0.095035	3E-9		0.0215212	[0.015-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1461	chr9	114835494	114835495	rs2564906	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	9q31.3	SUSD1	rs2564906-A	0.095037	4E-14		0.02853707	[0.021-0.036] unit increase	Affymetrix [93095623] (imputed)	N
1461	chr9	114835494	114835495	rs2564906	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q31.3	NR	rs2564906-A	0.126223	2E-19				Affymetrix, Illumina [20825802] (imputed)	N
1461	chr9	114839020	114839021	rs10981250	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	9q31.3		rs10981250-?	NR	8E-15				NR [~ 8900000] (imputed)	N
1461	chr9	114839326	114839327	rs7859231	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	9q31.3		rs7859231-G	NR	8E-13		0.0172	[0.012-0.022] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
1461	chr9	114840007	114840008	rs13295872	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	9q31.3		rs13295872-C	NR	1E-18		0.0212	[0.016-0.026] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
1461	chr9	114840007	114840008	rs13295872	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	9q31.3		rs13295872-C	0.252676	1E-8		0.0239309	[0.016-0.032] unit increase	Illumina [13476299] (imputed)	N
1461	chr9	114840024	114840025	rs13295887	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	9q31.3		rs13295887-?	NR	6E-16				NR [~ 8900000] (imputed)	N
1461	chr9	114840641	114840642	rs6477879	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q31.3	NR	rs6477879-A	0.22421	6E-18				Affymetrix, Illumina [24246363] (imputed)	N
1461	chr9	114841862	114841863	rs16916639	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	9q31.3	SUSD1	rs16916639-C	0.20692	4E-12		0.018887514	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1461	chr9	114841862	114841863	rs16916639	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	9q31.3		rs16916639-?	NR	6E-17				NR [~ 8900000] (imputed)	N
1461	chr9	114842031	114842032	rs28711442	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	9q31.3	SUSD1	rs28711442-A	0.097131	1E-12		0.026922373	[0.02-0.034] unit increase	Affymetrix [93095623] (imputed)	N
1461	chr9	114843328	114843329	rs2762465	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	9q31.3	SUSD1	rs2762465-A	0.168844	1E-11		0.020251734	[0.014-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1461	chr9	114850189	114850190	rs2782931	17362836	Schymick JC	2007-02-20	Lancet Neurol	Genome-wide genotyping in amyotrophic lateral sclerosis and neurologically normal controls: first stage analysis and public release of data.	Amyotrophic lateral sclerosis	276 European ancestry cases, 271 European ancestry controls	NA	9q31.3	SUSD1	rs2782931-?	NR	6E-6		1.11	[0.91-1.43]	Illumina [549062]	N
1461	chr9	114852932	114852933	rs35593442	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q31.3	NR	rs35593442-A	0.143373	7E-16				Affymetrix, Illumina [24653286] (imputed)	N
1461	chr9	114852932	114852933	rs35593442	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	9q31.3	NR	rs35593442-A	0.148202	4E-18		0.022439	[0.017-0.028] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
1461	chr9	114852932	114852933	rs35593442	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q31.3	NR	rs35593442-A	0.143295	2E-13				Affymetrix, Illumina [24558453] (imputed)	N
1461	chr9	114866313	114866313	rs141265106	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	9q32	NR	rs141265106-I	0.154592	3E-15		0.022589	[0.017-0.028] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
1461	chr9	114868166	114868167	rs7854787	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9q32		rs7854787-?	NR	6E-8				NR [~ 8900000] (imputed)	N
1461	chr9	114884819	114884819	rs397940963	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	9q32		rs397940963-AC	NR	9E-9		0.0116	[0.0077-0.0155] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
1461	chr9	114886568	114886569	rs146879704	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Reticulocyte count	437,291 European ancestry individuals	NA	9q32		rs146879704-?	NR	3E-10		0.117667	[0.081-0.154] unit increase	NR [9800000] (imputed)	N
1461	chr9	114886568	114886569	rs146879704	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Red blood cell count	445,305 European ancestry individuals	NA	9q32		rs146879704-?	NR	2E-11		0.113112	[0.078-0.148] unit increase	NR [9800000] (imputed)	N
1461	chr9	114886568	114886569	rs146879704	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Hemoglobin levels	445,373 European ancestry individuals	NA	9q32		rs146879704-?	NR	8E-11		0.122667	[0.086-0.159] unit increase	NR [9800000] (imputed)	N
1461	chr9	114886568	114886569	rs146879704	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	9q32	SUSD1	rs146879704-T	0.00331700000000001	9E-11		0.1263281	[0.088-0.164] unit increase	Affymetrix [93095623] (imputed)	N
1461	chr9	114886568	114886569	rs146879704	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q32	NR	rs146879704-T	0.00331714	3E-13				Affymetrix, Illumina [21126107] (imputed)	N
1461	chr9	114886568	114886569	rs146879704	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	9q32	NR	rs146879704-T	0.003329	1E-11		0.120116	[0.086-0.155] SD unit increase	Affymetrix, Illumina [50282193] (imputed)	N
1461	chr9	114897898	114897899	rs7849537	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	9q32	SUSD1	rs7849537-C	0.219724	4E-12		0.018640025	[0.013-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1461	chr9	114900499	114900500	rs112182189	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	9q32		rs112182189-G	NR	2E-12		0.0163	[0.012-0.021] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
1461	chr9	114900499	114900500	rs112182189	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	9q32	SUSD1	rs112182189-G	0.217343	1E-10		0.017368518	[0.012-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1461	chr9	114907889	114907890	rs12339388	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	9q32	SUSD1	rs12339388-T		1E-13		0.019	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
1461	chr9	114918169	114918170	rs13439915	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental longevity (mother's age at death)	52,776 middle-aged British individuals	NA	9q32	NR	rs13439915-?	NR	8E-6		0.028313	[0.016-0.041] unit increase	Affymetrix [9658292] (imputed)	N
1462	chr9	114971180	114971181	rs10981314	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	9q32		rs10981314-T	NR	7E-11		0.0114	[0.0081-0.0147] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1462	chr9	114982936	114982937	rs41280169	31712720	Forstner AJ	2019-11-11	Mol Psychiatry	Genome-wide association study of panic disorder reveals genetic overlap with neuroticism and depression.	Panic disorder	2,147 European ancestry cases, 7,760 European ancestry controls	2,408 European ancestry cases, 228,470 European ancestry controls	9q32	SUSD1, PTBP3	rs41280169-T	NR	3E-6		1.4	NR	Illumina [8757275] (imputed)	N
1462	chr9	115034484	115034485	rs140330106	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	9q32	Intergenic	rs140330106-?		8E-6		1.1	[1.06-1.15]	Illumina [7645193] (imputed)	N
1463	chr9	115087126	115087127	rs1056107	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal cancer	978 Austrian ancestry colorectal cancer cases, 636 Austrian ancestry advanced colorectal adenoma cases, 4,294 European ancestry controls	NA	9q32	Intergenic	rs1056107-?		6E-6		1.2291052	[NR]	Affymetrix [492217] (imputed)	N
1463	chr9	115118960	115118961	rs6477918	28424481	Sugiura-Ogasawara M	2017-04-20	J Hum Genet	The first genome-wide association study identifying new susceptibility loci for obstetric antiphospholipid syndrome.	Obstetric antiphospholipid syndrome	115 Japanese ancestry female cases, 419 Japanese ancestry male and female controls	NA	9q32	PTBP3	rs6477918-C	0.16	8E-6		2.15	[1.53-3.03]	Affymetrix [426344]	N
1463	chr9	115121244	115121245	rs7869288	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	9q32	HSDL2	rs7869288-G	0.905284395798898	5E-6	(F_Rhodospirillaceae_RNT)	0.275775	[0.16-0.39] unit decrease	Illumina [7711310] (imputed)	N
1463	chr9	115162331	115162332	rs185011186	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	9q32	HSDL2	rs185011186-A	0.999	2E-6	(AA)	0.302	unit increase	Illumina [NR] (imputed)	N
1463	chr9	115166386	115166387	rs184202621	28654678	Mandage R	2017-06-27	PLoS One	Genetic factors affecting EBV copy number in lymphoblastoid cell lines derived from the 1000 Genome Project samples.	Epstein-Barr virus copy number in lymphoblastoid cell lines	389 East Asian ancestry individuals, 189 South Asian ancestry individuals, 492 European ancestry individuals, 467 Sub-Saharan African ancestry individuals, 59 African American individuals, 157 Hispanic/Latino individuals	NA	9q32	HSDL2	rs184202621-?	NR	3E-6	(East and South Asian)			NR [at least 880000]	N
1463	chr9	115184392	115184393	rs113394219	34563919	Chiba Y	2021-09-20	J Neurol Sci	Genetic and demographic predisposing factors associated with pediatric sleepwalking in the Philadelphia Neurodevelopmental Cohort.	Sleepwalking	155 African American cases, 2,598 African American controls	NA	9q32		rs113394219-?	NR	4E-7		2.822		Illumina [NR] (imputed)	N
1463	chr9	115202609	115202610	rs10123584	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	9q32		rs10123584-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1464	chr9	115222043	115222044	rs2274784	32314116	Zhang H	2020-04-20	Osteoporos Int	Pleiotropic loci underlying bone mineral density and bone size identified by a bivariate genome-wide association analysis.	Hip bone size	3,267 European ancestry individuals, 1,619 Chinese ancestry individuals, 843 African American individuals, 446 Hispanic individuals	NA	9q32	NR	rs2274784-G	NR	3E-7		0.1	[0.061-0.139] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1464	chr9	115222043	115222044	rs2274784	32314116	Zhang H	2020-04-20	Osteoporos Int	Pleiotropic loci underlying bone mineral density and bone size identified by a bivariate genome-wide association analysis.	Bone mineral density (hip) and hip bone size	3,267 European ancestry individuals, 1,619 Chinese ancestry individuals, 843 African American individuals, 446 Hispanic individuals	NA	9q32	NR	rs2274784-G	NR	2E-8				Affymetrix, Illumina [NR] (imputed)	N
1464	chr9	115254576	115254577	rs72762209	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9q32		rs72762209-?	NR	4E-10				NR [~ 8900000] (imputed)	N
1464	chr9	115325364	115325365	rs59289606	30373671	Hayden LP	2018-10-29	Respir Res	Childhood asthma is associated with COPD and known asthma variants in COPDGene: a genome-wide association study.	Self-reported childhood asthma in adult smokers	385 European ancestry cases, 4979 European ancestry controls, 325 African American cases, 2342 African American controls	NA	9q32	KIAA1958	rs59289606-A	0.2	5E-8	(EA)	2.06	NR	Illumina [up to 15374350] (imputed)	N
1465	chr9	115414066	115414067	rs62575205	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Caudate nucleus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	9q32	KIAA1958	rs62575205-?		1E-6				Illumina [4322238] (imputed)	N
1465	chr9	115452908	115452909	rs1711745	25065397	Gialluisi A	2014-07-28	Genes Brain Behav	Genome-wide screening for DNA variants associated with reading and language traits.	Reading disability or specific language impairment adjusted for intelligence quotient (pleiotropy)	1,826 children	NA	9q32	KIAA1958, INIP	rs1711745-A	0.09122	1E-6		4.888	z score increase	Illumina [at least 6190549] (imputed)	N
1466	chr9	115517784	115517785	rs12555425	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q32	NR	rs12555425-A	0.304813	2E-13				Affymetrix, Illumina [24332387] (imputed)	N
1466	chr9	115577066	115577067	rs10081751	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q32	NR	rs10081751-C	0.298926	2E-13				Affymetrix, Illumina [24558453] (imputed)	N
1466	chr9	115604642	115604643	rs11794056	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	9q32		rs11794056-?	NR	3E-11				NR [~ 8900000] (imputed)	N
1467	chr9	115609940	115609941	rs10817396	30004843	Ge S	2018-07-01	OMICS	Type 2 Diabetes Mellitus: Integrative Analysis of Multiomics Data for Biomarker Discovery.	Elevated fasting plasma glucose	76 Chinese ancestry cases, 435 Chinese ancestry controls	NA	9q32	SNX30	rs10817396-A	0.1367	3E-6		2.011	[1.234-2.788]	Illumina [69485]	N
1467	chr9	115609940	115609941	rs10817396	29973135	Rimpela JM	2018-07-04	BMC Med Genet	Genome-wide association study of nocturnal blood pressure dipping in hypertensive patients.	Diastolic blood pressure night-to-day ratio in hypertension	204 Finnish ancestry individuals	NA	9q32	SNX30	rs10817396-G	0.17	6E-6		3.1	percent increase	Illumina [631844]	N
1467	chr9	115625022	115625023	rs6477963	28322283	Chibnik LB	2017-03-21	Mol Psychiatry	Susceptibility to neurofibrillary tangles: role of the PTPRD locus and limited pleiotropy with other neuropathologies.	Microscopic brain infarct	253 European ancestry cases, 656 European ancestry controls	369 individuals	9q32	NR	rs6477963-G	0.62	9E-6	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1467	chr9	115672418	115672419	rs754164	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	9q32	SNX30	rs754164-?	NR	5E-6	(2-hydroxyglutaric acid)	0.22971165	[0.13-0.33] unit increase	Affymetrix [at least 2500000] (imputed)	N
1467	chr9	115687734	115687735	rs10817408	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	9q32	NR	rs10817408-C	0.149506685242978	6E-6	(IGP75)	0.2271	[0.13-0.33] unit increase	Illumina [~ 2500000] (imputed)	N
1467	chr9	115687734	115687735	rs10817408	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	9q32	NR	rs10817408-C	0.149460512683578	7E-6	(IGP40)	0.2234	[0.13-0.32] unit increase	Illumina [~ 2500000] (imputed)	N
1467	chr9	115687734	115687735	rs10817408	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	9q32	NR	rs10817408-C	0.149316170753455	6E-6	(IGP69)	0.2277	[0.13-0.33] unit increase	Illumina [~ 2500000] (imputed)	N
1467	chr9	115728929	115728930	rs74820080	31447353	Maciukiewicz M	2019-08-22	Schizophr Res	Genome-wide association study on antipsychotic-induced weight gain in Europeans and African-Americans.	Antipsychotic drug-induced weight gain in schizophrenia	144 European ancestry individuals, 57 African American individuals	NA	9q32	ZNF883	rs74820080-?		5E-6	(EA)	0.383	unit increase	Illumina [1819374] (imputed)	N
1468	chr9	115772547	115772548	rs77506377	30353303	Seo M	2018-10-23	J Mol Med (Berl)	Genomics and response to long-term oxygen therapy in chronic obstructive pulmonary disease.	Response to long-term oxygen therapy in chronic obstructive pulmonary disease	290 European ancestry individuals	NA	9q32	NR	rs77506377-?	NR	2E-6				Illumina [5946283] (imputed)	N
1469	chr9	115914246	115914247	rs397759724	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	9q32		rs397759724-C	NR	5E-9		0.0145	[0.0096-0.0194] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
1469	chr9	115914582	115914583	rs147707926	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	9q32		rs147707926-T	NR	1E-19		0.0825	[0.065-0.1] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
1469	chr9	115914582	115914583	rs147707926	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	9q32		rs147707926-C	0.981	3E-15		0.34	[0.25-0.42] % increase	Affymetrix [NR] (imputed)	N
1469	chr9	115914582	115914583	rs147707926	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	9q32	SLC31A2	rs147707926-T	0.019385	1E-40		0.114414364	[0.098-0.131] unit decrease	Affymetrix [93095623] (imputed)	N
1469	chr9	115914582	115914583	rs147707926	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	9q32	SLC31A2	rs147707926-T	0.019339	5E-32		0.10175056	[0.085-0.119] unit decrease	Affymetrix [93095623] (imputed)	N
1469	chr9	115914582	115914583	rs147707926	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	9q32	SLC31A2	rs147707926-T	0.0193449999999999	8E-23		0.0780647	[0.063-0.094] unit decrease	Affymetrix [93095623] (imputed)	N
1469	chr9	115914582	115914583	rs147707926	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	9q32	SLC31A2	rs147707926-T	0.019337	7E-20		0.07744707	[0.061-0.094] unit decrease	Affymetrix [93095623] (imputed)	N
1469	chr9	115914582	115914583	rs147707926	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	9q32	SLC31A2	rs147707926-T	0.019373	9E-10		0.05242957	[0.036-0.069] unit increase	Affymetrix [93095623] (imputed)	N
1469	chr9	115914582	115914583	rs147707926	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	9q32	SLC31A2	rs147707926-T	0.019376	6E-11		0.05602806	[0.039-0.073] unit increase	Affymetrix [93095623] (imputed)	N
1469	chr9	115914582	115914583	rs147707926	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q32	NR	rs147707926-T	0.0194106	2E-22				Affymetrix, Illumina [24246363] (imputed)	N
1469	chr9	115914582	115914583	rs147707926	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	9q32	NR	rs147707926-T	0.020187	2E-24		0.070495	[0.057-0.084] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1469	chr9	115914582	115914583	rs147707926	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q32	NR	rs147707926-T	0.0194225	2E-17				Affymetrix, Illumina [20825802] (imputed)	N
1469	chr9	115914582	115914583	rs147707926	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	9q32	NR	rs147707926-T	0.020173	1E-19		0.066048	[0.052-0.08] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
1469	chr9	115914582	115914583	rs147707926	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	9q32		rs147707926-?	NR	2E-20				NR [~ 8900000] (imputed)	N
1469	chr9	115918551	115918552	rs10121164	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	9q32	SLC31A2	rs10121164-A	0.679735	1E-13		0.0176727	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1469	chr9	115918551	115918552	rs10121164	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q32	NR	rs10121164-A	0.7005	2E-12				Affymetrix, Illumina [24649327] (imputed)	N
1469	chr9	115924810	115924811	rs3827672	34337005	Duan H	2021-07-17	Biomed Res Int	A Genome-Wide Association Study of Age-Related Hearing Impairment in Middle- and Old-Aged Chinese Twins.	Hearing function (2 kHz)	131 Chinese ancestry dizygotic twin pairs	NA	9q32		rs3827672-?	NR	7E-6				Illumina [1365315]	N
1469	chr9	115976030	115976031	rs10114423	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	9q32	NR	rs10114423-A	0.331814	2E-14		0.015079	[0.011-0.019] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1469	chr9	115997248	115997249	rs6477998	23303382	Hong KW	2013-01-10	J Hum Genet	Genome-wide association study of serum albumin:globulin ratio in Korean populations.	Hematology traits	4,637 East Asian ancestry individuals	4,205 East Asian ancestry individuals	9q32	SLC31A1	rs6477998-C	0.467	8E-6	(ALB/GLB)	0.013	[0.0071-0.0189] unit increase	Affymetrix [290659]	N
1470	chr9	116002564	116002565	rs7851623	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	9q32	SLC31A1	rs7851623-T	0.27439	5E-9		0.014461217	[0.0096-0.0193] unit increase	Affymetrix [93095623] (imputed)	N
1470	chr9	116005782	116005783	rs10817465	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9q32		rs10817465-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1470	chr9	116009082	116009083	rs10817467	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs10817467-A	0.725196	2E-15		0.0793697	[0.059-0.099] decrease	Affymetrix [11014269] (imputed)	N
1470	chr9	116037691	116037692	rs41276777	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	9q32		rs41276777-A	NR	2E-15		0.0715	[0.054-0.089] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
1470	chr9	116042262	116042263	rs10733604	29682794	Szekely E	2018-04-22	Genet Epidemiol	Genetic associations with childhood brain growth, defined in two longitudinal cohorts.	White matter growth	581 European ancestry individuals, 31 African American individuals, 8 Asian American individuals 15 admixed individuals, 80 other ancestries individuals	NA	9q32	PRPF4	rs10733604-?	NR	6E-6				Illumina [at least 653030]	N
1470	chr9	116047471	116047472	rs17831500	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	9q32	NR	rs17831500-C	0.223581	6E-18		0.019905	[0.015-0.024] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
1470	chr9	116057714	116057714	rs750360862	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	9q32	RNF183	rs750360862-A	0.2924	2E-15		0.0165	[0.012-0.021] unit decrease	Affymetrix [18391927] (imputed)	N
1470	chr9	116059566	116059567	rs10981723	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q32	NR	rs10981723-C	0.195041	7E-17				Affymetrix, Illumina [23114412] (imputed)	N
1470	chr9	116085821	116085822	rs7025371	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	9q32	WDR31	rs7025371-G	0.558065	3E-11		0.014839403	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
1470	chr9	116085821	116085822	rs7025371	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	9q32		rs7025371-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1470	chr9	116114071	116114072	rs4979235	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	9q32	BSPRY	rs4979235-T	0.354484	5E-9		0.013549196	[0.009-0.0181] unit decrease	Affymetrix [93095623] (imputed)	N
1470	chr9	116122953	116122954	rs752757	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	9q32	HDHD3	rs752757-?	NR	9E-6	(aconitate)	0.19871084	[0.11-0.29] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1471	chr9	116131694	116131695	rs10121150	25820613	Warrington NM	2015-03-27	Hum Mol Genet	Genome-wide association study of blood lead shows multiple associations near ALAD.	Lead levels in blood	5,433 individuals	NA	9q32	BSPRY	rs10121150-A	0.786	3E-8		0.143	[0.078-0.208] unit decrease	Illumina [6391392] (imputed)	N
1471	chr9	116136914	116136915	rs80286918	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	9q32	HDHD3	rs80286918-G	0.0116796673682271	4E-6	(G_Ruminococcus_HB)	1.84358	[1.06-2.63] unit decrease	Illumina [7711310] (imputed)	N
1471	chr9	116151190	116151191	rs1805313	25820613	Warrington NM	2015-03-27	Hum Mol Genet	Genome-wide association study of blood lead shows multiple associations near ALAD.	Lead levels in blood	5,433 individuals	NA	9q32	ALAD	rs1805313-A	0.683	4E-14		0.142	[0.089-0.195] unit increase	Illumina [6391392] (imputed)	N
1471	chr9	116151526	116151527	rs8177812	25820613	Warrington NM	2015-03-27	Hum Mol Genet	Genome-wide association study of blood lead shows multiple associations near ALAD.	Lead levels in blood	5,433 individuals	NA	9q32	ALAD	rs8177812-A	0.122	2E-6	(conditional on rs1805313)	0.131	[0.041-0.221] unit increase	Illumina [6391392] (imputed)	N
1471	chr9	116153890	116153891	rs1800435	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	9q32	ALAD	rs1800435-G	0.080461	1E-12		0.03051957	[0.022-0.039] unit increase	Affymetrix [93095623] (imputed)	N
1471	chr9	116153890	116153891	rs1800435	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	9q32	ALAD	rs1800435-G	0.080465	9E-12		0.029432721	[0.021-0.038] unit increase	Affymetrix [93095623] (imputed)	N
1471	chr9	116153890	116153891	rs1800435	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	9q32	ALAD	rs1800435-G	0.080464	1E-14		0.03320329	[0.025-0.042] unit increase	Affymetrix [93095623] (imputed)	N
1471	chr9	116153890	116153891	rs1800435	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	9q32	ALAD	rs1800435-G	0.080469	4E-14		0.032458235	[0.024-0.041] unit increase	Affymetrix [93095623] (imputed)	N
1471	chr9	116168754	116168755	rs35358414	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9q32		rs35358414-?	NR	2E-15				NR [~ 8900000] (imputed)	N
1471	chr9	116169302	116169303	rs35533905	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q32	NR	rs35533905-C	0.103807	5E-10				Affymetrix, Illumina [24588908] (imputed)	N
1471	chr9	116191204	116191205	rs111841972	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	9q32		rs111841972-A	0.9425	5E-9		0.27975962	[0.18-0.37] mmHg increase	Affymetrix, Illumina [242865] (imputed)	N
1471	chr9	116200026	116200027	rs146378021	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	9q32		rs146378021-C	0.094621	7E-13		0.027592774	[0.02-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
1471	chr9	116200026	116200027	rs146378021	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	9q32	NR	rs146378021-G	0.905497	2E-18		0.028769	[0.022-0.035] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1471	chr9	116210762	116210763	rs111296842	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	9q32		rs111296842-?	NR	8E-9				NR [~ 8900000] (imputed)	N
1471	chr9	116214057	116214058	rs12338788	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	9q32	RGS3	rs12338788-A	0.151821	4E-13		0.022262102	[0.016-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
1471	chr9	116214057	116214058	rs12338788	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	9q32	RGS3	rs12338788-A	0.151823	5E-19		0.02741685	[0.021-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
1471	chr9	116222554	116222555	rs113797410	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	9q32	RGS3	rs113797410-T		4E-11		0.023	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
1472	chr9	116275575	116275575	rs199930211	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	9q32		rs199930211-TC	NR	5E-12		0.0231	[0.017-0.03] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
1472	chr9	116278239	116278240	rs2050866	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q32	NR	rs2050866-A	0.0949001	2E-12				Affymetrix, Illumina [24332387] (imputed)	N
1472	chr9	116279700	116279701	rs72761985	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q32	NR	rs72761985-G	0.905617	2E-17				Affymetrix, Illumina [17210439] (imputed)	N
1472	chr9	116292206	116292207	rs12353541	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q32	NR	rs12353541-C	0.092673	6E-17				Affymetrix, Illumina [24558453] (imputed)	N
1472	chr9	116294658	116294660	rs146966302	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	9q32		rs146966302-A	NR	1E-9		0.0226	[0.015-0.03] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1472	chr9	116311074	116311075	rs10981820	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	9q32	NR	rs10981820-T	0.094509	1E-10		0.020181	[0.014-0.026] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1472	chr9	116346117	116346118	rs41305473	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	9q32	RGS3	rs41305473-?		4E-8				Affymetrix, Illumina [NR] (imputed)	N
1472	chr9	116349208	116349209	rs10981834	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	9q32	RP11-168K11.2, RGS3	rs10981834-C	0.148219	9E-20		0.028273469	[0.022-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
1472	chr9	116349297	116349298	rs10981835	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	9q32	NR	rs10981835-A	0.147959	3E-14		0.019958	[0.015-0.025] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1472	chr9	116349297	116349298	rs10981835	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q32	NR	rs10981835-A	0.121451	2E-16				Affymetrix, Illumina [24653286] (imputed)	N
1472	chr9	116349297	116349298	rs10981835	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	9q32	NR	rs10981835-A	0.147947	3E-19		0.023483	[0.018-0.029] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
1472	chr9	116349297	116349298	rs10981835	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	9q32		rs10981835-?	NR	3E-14				NR [~ 8900000] (imputed)	N
1472	chr9	116356528	116356529	rs10817493	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	9q32	RGS3	rs10817493-C		5E-12		0.017	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
1472	chr9	116358537	116358538	rs113800797	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	9q32	RGS3	rs113800797-T	0.079	5E-7		0.0648	[0.04-0.09] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1472	chr9	116360970	116360971	rs944343	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	9q32	NR	rs944343-G	NR	3E-9		0.0164	[0.011-0.022] unit increase	Affymetrix [9000000] (imputed)	N
1472	chr9	116365187	116365188	rs567743	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	9q32		rs567743-G	NR	3E-9		0.0161	[0.011-0.021] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
1472	chr9	116387253	116387254	rs540599	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	9q32		rs540599-?	NR	7E-16				NR [~ 8900000] (imputed)	N
1472	chr9	116389288	116389289	rs479766	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	9q32		rs479766-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1473	chr9	116461419	116461420	rs72765677	31073882	Plotnikov D	2019-05-09	Hum Genet	A commonly occurring genetic variant within the NPLOC4-TSPAN10-PDE6G gene cluster is associated with the risk of strabismus.	Strabismus	1,345 British ancestry cases, 65,349 British ancestry controls	116 cases, 5,084 controls	9q32	NR	rs72765677-C	0.9299999999999999	1E-6	(EA)	1.5625	[1.3-1.56]	Affymetrix [7469170] (imputed)	N
1473	chr9	116489357	116489358	rs78344754	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Sensorimotor dexterity	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	9q32	intergenic	rs78344754-T	NR	9E-6		0.824436	[0.47-1.18] unit decrease	Illumina [> 6200000] (imputed)	N
1473	chr9	116507665	116507666	rs7045057	34271060	DeVore SB	2021-07-13	J Allergy Clin Immunol	Novel Role for Caspase Recruitment Domain Family Member 14 and its Genetic Variant rs11652075 in Skin Filaggrin Homeostasis.	Lesional skin FLG expression levels in childhood atopic dermatitis	235 Black or unknown ancestry individuals	NA	9q32		rs7045057-G	NR	9E-6	9	0.78	unit decrease	Illumina [487523]	N
1474	chr9	116535325	116535326	rs16909256	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	9q32	NR	rs16909256-?	NR	2E-57				Affymetrix [NR]	N
1474	chr9	116544405	116544406	rs10981922	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	9q32	NR	rs10981922-G	0.361033	1E-24		0.0331023	[0.027-0.039] unit decrease	NR [19129689] (imputed)	N
1474	chr9	116548429	116548430	rs10981925	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	9q32		rs10981925-?	NR	2E-22				NR [~ 8900000] (imputed)	N
1474	chr9	116553210	116553211	rs949527	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	9q32	ZNF618	rs949527-T	0.647	2E-9		0.0075	[0.0051-0.0099] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
1474	chr9	116555660	116555661	rs10817520	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	9q32	ZNF618	rs10817520-T	0.3426	2E-8		0.011545872	[0.0075-0.0156] unit increase	Illumina [9339358] (imputed)	N
1474	chr9	116555770	116555771	rs10122669	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	9q32		rs10122669-A	0.4143	3E-8		0.0079	[0.0052-0.0106] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1474	chr9	116565926	116565930	rs201655553	28272467	Heilmann-Heimbach S	2017-03-08	Nat Commun	Meta-analysis identifies novel risk loci and yields systematic insights into the biology of male-pattern baldness.	Male-pattern baldness	10,846 European ancestry cases, 11,672 European ancestry controls	NA	9q32		rs201655553-AAAG	0.33	7E-9		0.14	[0.1-0.18] unit increase	Affymetrix, Illumina [8004650] (imputed)	N
1474	chr9	116586361	116586362	rs12554801	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Tea consumption	336,898 European ancestry individuals	39,924 European ancestry individuals	9q32	ZNF618	rs12554801-T	0.3389	4E-6		0.0075	[0.0044-0.0106] unit increase	Affymetrix [~ 7740000] (imputed)	N
1474	chr9	116596245	116596245	rs377752731	30498476	Liu H	2018-11-15	Front Endocrinol (Lausanne)	Heritability and Genome-Wide Association Study of Plasma Cholesterol in Chinese Adult Twins.	Low density lipoprotein cholesterol levels	139 Chinese ancestry dizygotic twin pairs	NA	9q32	ZNF618	rs377752731-?		9E-6				Illumina [7405822] (imputed)	N
1475	chr9	116682685	116682686	rs35271347	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	9q32		rs35271347-A	NR	3E-8		0.0121	[0.0078-0.0164] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
1475	chr9	116691091	116691092	rs148488001	33607172	Nygaard M	2021-02-16	Mech Ageing Dev	Genome-wide association analysis of cognitive function in Danish long-lived individuals.	Cognitive function in longevity	490 Danish ancestry individuals	NA	9q32	ZNF618	rs148488001-G	0.011	8E-6		11.55	[NR] unit increase	Illumina [4827900] (imputed)	N
1475	chr9	116695204	116695205	rs10982007	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	9q32		rs10982007-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1475	chr9	116696624	116696625	rs13290326	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	9q32	ZNF618	rs13290326-T	0.4919	5E-16		0.1575	[0.12-0.2] mmHg decrease	Affymetrix [NR] (imputed)	N
1475	chr9	116696624	116696625	rs13290326	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	9q32	ZNF618	rs13290326-T	0.5025	9E-17		0.1443	[0.11-0.18] unit decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1475	chr9	116702865	116702866	rs10448275	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	9q32	ZNF618	rs10448275-T	0.4946	2E-10		0.1708	[0.12-0.22] mmHg increase	Affymetrix [NR] (imputed)	N
1475	chr9	116703229	116703230	rs78859913	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		ZNF618	rs78859913-?	NR	2E-8	(female)	3.54479	[NR] unit increase	Affymetrix [NR] (imputed)	N
1475	chr9	116726765	116726766	rs814697	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	9q32		rs814697-C	NR	2E-8		0.011	[0.0071-0.0149] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1475	chr9	116729842	116729843	rs814698	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite concentrations in chronic kidney disease	1,143 European ancestry cases	NA	9q32	ZNF618	rs814698-T	NR	2E-8	(Phosphatidylcholine with acyl-alkyl residue sum C44:4)	0.26961	[0.18-0.36] unit increase	Illumina [up to 9281895] (imputed)	N
1475	chr9	116767655	116767656	rs11788633	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	9q32	ZNF618	rs11788633-C	0.6547	7E-9		1.0198953		Affymetrix [11880941] (imputed)	N
1475	chr9	116773868	116773869	rs11793049	27171184	Kuo HC	2016-05-12	PLoS One	Genome-Wide Association Study Identifies Novel Susceptibility Genes Associated with Coronary Artery Aneurysm Formation in Kawasaki Disease.	Coronary artery aneurysm in Kawasaki disease	11 Taiwanese ancestry cases, 146 Taiwanese ancestry controls	NA	9q32	ZNF618	rs11793049-A	NR	2E-7				Affymetrix [559609]	N
1476	chr9	116789253	116789254	rs77198048	30647433	Legge SE	2019-01-15	Mol Psychiatry	A genome-wide association study in individuals of African ancestry reveals the importance of the Duffy-null genotype in the assessment of clozapine-related neutropenia.	Neutrophil level response to clozapine in treatment-resistant schizophrenia	552 Sub-Saharan African ancestry individuals	NA	9q32	ZNF618	rs77198048-T	0.107	9E-9		1.625	[1.07-2.18] unit increase	Illumina [~ 13500000] (imputed)	N
1476	chr9	116814660	116814661	rs12683020	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	9q32		rs12683020-?	NR	2E-12				NR [~ 8900000] (imputed)	N
1476	chr9	116814660	116814661	rs12683020	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	9q32	NR	rs12683020-G	0.225051	4E-9		0.0218337	[0.015-0.029] unit decrease	NR [19129689] (imputed)	N
1476	chr9	116825328	116825328	rs34246861	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (computer use)	408,815 European ancestry individuals	NA	9q32	NR	rs34246861-?		7E-9		0.0144145	[0.0095-0.0193] unit increase	Affymetrix [19400418] (imputed)	N
1476	chr9	116832006	116832007	rs141738059	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q32	AMBP	rs141738059-C	0.013	3E-17	(Sulfatase-modifying factor 1, SUMF1.6941.11.3)	0.93	[0.71-1.15] unit decrease	Affymetrix [10572788] (imputed)	N
1476	chr9	116832006	116832007	rs141738059	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q32	AMBP	rs141738059-C	0.013	3E-17	(B-cell lymphoma/leukemia 10, BCL10.8768.4.3)	0.94	[0.72-1.16] unit increase	Affymetrix [10572788] (imputed)	N
1476	chr9	116832006	116832007	rs141738059	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q32	AMBP	rs141738059-C	0.013	2E-12	(Retinol dehydrogenase 16, RDH16.12881.17.3)	0.78	[0.56-1] unit increase	Affymetrix [10572788] (imputed)	N
1476	chr9	116832006	116832007	rs141738059	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q32	AMBP	rs141738059-C	0.013	1E-20	(Hepatocyte nuclear factor 4-alpha, HNF4A.10041.3.3)	1.03	[0.81-1.25] unit decrease	Affymetrix [10572788] (imputed)	N
1476	chr9	116837744	116837745	rs12344124	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (PANSS score)	1,390 European ancestry individuals	NA	9q32		rs12344124-?	NR	8E-6	(MLM)	0.3106994	[0.17-0.45] unit increase	Illumina [~ 9000000] (imputed)	N
1476	chr9	116838742	116838743	rs2567700	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (PANSS score)	1,390 European ancestry individuals	NA	9q32		rs2567700-C	NR	7E-6	(GLM)	3.4596	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
1476	chr9	116889533	116889534	rs79523756	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	9q32	NR	rs79523756-C	NR	2E-9	(GEE model)	0.75083	[0.5-1] unit decrease	NR [NR] (imputed)	N
1476	chr9	116890162	116890163	rs2839874	24564958	St Pourcain B	2014-02-24	Mol Autism	Variability in the common genetic architecture of social-communication spectrum phenotypes during childhood and adolescence.	Social communication problems	Up to 5,628 European ancestry individuals	NA	9q32	COL27A1	rs2839874-C	0.73	6E-6	(Age 8)	0.13	[0.071-0.189] unit increase	Illumina [2293137] (imputed)	N
1476	chr9	116905542	116905543	rs4979341	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Osteoarthritis of the hip or knee	39,427 European ancestry cases, 378,169 European ancestry controls	NA	9q32	NR	rs4979341-T	0.27	3E-12		1.06	[1.04-1.08]	Affymetrix, Illumina [up to 17000000] (imputed)	N
1476	chr9	116909145	116909146	rs1078301	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Knee osteoarthritis	24,955 European ancestry cases, 378,169 European ancestry controls	NA	9q32	NR	rs1078301-T	0.27	1E-10		1.07	[1.05-1.09]	Affymetrix, Illumina [up to 17000000] (imputed)	N
1476	chr9	116909145	116909146	rs1078301	30374069	Styrkarsdottir U	2018-10-29	Nat Genet	Meta-analysis of Icelandic and UK data sets identifies missense variants in SMO, IL11, COL11A1 and 13 more new loci associated with osteoarthritis.	Knee osteoarthritis	23,877 European ancestry cases, 562,153 European ancestry controls	NA	9q32	Intergenic	rs1078301-T	NR	1E-10		1.07	[1.05-1.1]	Affymetrix, Illumina [11554240] (imputed)	N
1476	chr9	116911146	116911147	rs919642	31482140	Meng W	2019-08-28	Commun Biol	Genome-wide association study of knee pain identifies associations with GDF5 and COL27A1 in UK Biobank.	Knee pain	22,204 British ancestry cases, 149,312 British ancestry controls	NA	9q32	LOC105376225, COL27A1	rs919642-A	0.732	2E-8		0.007	NR unit increase	Affymetrix [15377520] (imputed)	N
1476	chr9	116911146	116911147	rs919642	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Osteoarthritis	77,052 European ancestry cases, 378,169 European ancestry controls	NA	9q32	NR	rs919642-T	0.27	9E-15		1.05	[1.04-1.06]	Affymetrix, Illumina [up to 17000000] (imputed)	N
1476	chr9	116913793	116913794	rs2808772	31482140	Meng W	2019-08-28	Commun Biol	Genome-wide association study of knee pain identifies associations with GDF5 and COL27A1 in UK Biobank.	Knee pain	22,204 British ancestry cases, 149,312 British ancestry controls	NA	9q32	LOC105376225, COL27A1	rs2808772-A	0.525	1E-8		0.006	NR unit increase	Affymetrix [15377520] (imputed)	N
1476	chr9	116916213	116916214	rs72760655	34450027	Boer CG	2021-08-24	Cell	Deciphering osteoarthritis genetics across 826,690 individuals from 9 populations.	Osteoarthritis of the hip or knee	88,842 European ancestry cases, 397,208 European ancestry controls, 899 Japanese ancestry cases, 3,396 Japanese ancestry controls	NA	9q32		rs72760655-A	0.3309	6E-13		1.0475981	[1.034336578-1.061029609]	Affymetrix, Illumina [NR] (imputed)	N
1476	chr9	116916213	116916214	rs72760655	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	9q32	COL27A1	rs72760655-C	0.67813	4E-15		0.026397	[0.02-0.033] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
1477	chr9	116929326	116929327	rs737142	29559693	Zengini E	2018-03-20	Nat Genet	Genome-wide analyses using UK Biobank data provide insights into the genetic architecture of osteoarthritis.	Osteoarthritis of the hip (hospital diagnosed)	2,396 European ancestry cases, 9,593 European ancestry controls	5,714 Icelandic ancestry cases, 199,421 Icelandic ancestry controls	9q32	NR	rs737142-C	0.328914	3E-6		1.1001	[1.0567-1.1452]	Affymetrix [16122076] (imputed)	N
1477	chr9	116929326	116929327	rs737142	29559693	Zengini E	2018-03-20	Nat Genet	Genome-wide analyses using UK Biobank data provide insights into the genetic architecture of osteoarthritis.	Osteoarthritis (hospital diagnosed)	10,083 European ancestry cases, 40,425 European ancestry controls	18,069 Icelandic ancestry cases, 246,293 Icelandic ancestry controls	9q32	NR	rs737142-C	0.328346	9E-6		1.0525	[1.0291-1.0765]	Affymetrix [16468597] (imputed)	N
1477	chr9	116930099	116930100	rs2567707	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	9q32		rs2567707-A	0.2396	8E-12		0.12699974	[0.091-0.163] mmHg decrease	Affymetrix, Illumina [242866] (imputed)	N
1477	chr9	116943356	116943357	rs1431819	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	9q32	NR	rs1431819-G	0.6888	6E-9		0.0293	[0.02-0.039] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1477	chr9	116943356	116943357	rs1431819	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	9q32	NR	rs1431819-G	0.7075	2E-10		0.0294	[0.02-0.038] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1477	chr9	116970753	116970754	rs117181309	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9q32		rs117181309-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1477	chr9	116991070	116991071	rs7868992	22889924	Scharf JM	2012-08-14	Mol Psychiatry	Genome-wide association study of Tourette's syndrome.	Tourette syndrome	778 European ancestry cases, 4,414 European ancestry controls, 242 Ashkenazi Jewish cases, 354 Ashkenazi Jewish controls, 265 French Canadian founder cases, 196 French Canadian founder controls	211 Latin American cases, 285 Latin American controls	9q32	KIF12, ORM1, COL27A1	rs7868992-G	0.28	3E-8		1.29	[NR]	Illumina [484295]	N
1477	chr9	116998788	116998789	rs1249718	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	9q32		rs1249718-C	0.26	2E-9		6.01	z score increase	Affymetrix [9061022] (imputed)	N
1477	chr9	117039724	117039725	rs10817582	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9q32		rs10817582-?	NR	2E-20				NR [~ 8900000] (imputed)	N
1478	chr9	117049890	117049891	rs946053	18391951	Gudbjartsson DF	2008-04-06	Nat Genet	Many sequence variants affecting diversity of adult human height.	Height	30,968 European ancestry individuals	8,541 European ancestry individuals	9q32	COL27A1	rs946053-T	0.52	2E-7		4.4	[2.83-5.97] % s.d. increase	Affymetrix, Illumina [up to 304226]	N
1478	chr9	117051846	117051847	rs1249741	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	9q32	COL27A1	rs1249741-A	0.4759	2E-13		0.014	[0.01-0.018] unit decrease	Affymetrix [18391927] (imputed)	N
1478	chr9	117074726	117074727	rs34986757	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	9q32	NR	rs34986757-G	NR	2E-9		0.054	[0.036-0.072] unit increase	Affymetrix [9000000] (imputed)	N
1478	chr9	117083802	117083803	rs150611042	24357727	Rocanin-Arjo A	2013-12-19	Blood	A meta-analysis of genome-wide association studies identifies ORM1 as a novel gene controlling thrombin generation potential.	Thrombin generation potential phenotypes	714 European ancestry venous thrombosis cases, 1,253 European ancestry individuals	714 European ancestry venous thrombosis cases, 543 European ancestry individuals	9q32	ORM1	rs150611042-A	0.082	8E-6	(ETP)	0.038	[0.020-0.056] nM/min decrease	NR [6652054] (imputed)	N
1478	chr9	117083802	117083803	rs150611042	24357727	Rocanin-Arjo A	2013-12-19	Blood	A meta-analysis of genome-wide association studies identifies ORM1 as a novel gene controlling thrombin generation potential.	Thrombin generation potential phenotypes	714 European ancestry venous thrombosis cases, 1,253 European ancestry individuals	714 European ancestry venous thrombosis cases, 543 European ancestry individuals	9q32	ORM1	rs150611042-A	0.082	7E-15	(Lag Time)	0.354	[0.27-0.44] min decrease	NR [6652054] (imputed)	N
1478	chr9	117086240	117086241	rs113354603	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycoprotein acetyls levels	115,082 European ancestry individuals	NA	9q32		rs113354603-G	0.929269	2E-51		0.12804	[0.11-0.14] unit decrease	NR [11722792] (imputed)	N
1478	chr9	117086240	117086241	rs113354603	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Tumor necrosis factor receptor 1 levels	21,758 European ancestry individuals	9,173 individuals	9q32		rs113354603-A	0.064	4E-12		0.1438	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1478	chr9	117088063	117088064	rs10982156	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TFPI	5,363 Icelandic ancestry individuals	NA	9q32		rs10982156-A	0.08999	4E-12		0.220754	[0.16-0.28] unit decrease	Illumina [7506463] (imputed)	N
1478	chr9	117088063	117088064	rs10982156	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SPINK2	5,366 Icelandic ancestry individuals	NA	9q32		rs10982156-A	0.08999	1E-15		0.253639	[0.19-0.32] unit increase	Illumina [7506463] (imputed)	N
1478	chr9	117088063	117088064	rs10982156	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein F10	5,366 Icelandic ancestry individuals	NA	9q32		rs10982156-A	0.08999	9E-51		0.463661	[0.4-0.52] unit decrease	Illumina [7506463] (imputed)	N
1478	chr9	117088063	117088064	rs10982156	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein F10	5,364 Icelandic ancestry individuals	NA	9q32		rs10982156-A	0.08999	3E-47		0.445186	[0.38-0.51] unit decrease	Illumina [7506463] (imputed)	N
1478	chr9	117088063	117088064	rs10982156	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	9q32	NR	rs10982156-A	0.06961799999999996	1E-9		0.0370372	[0.025-0.049] unit increase	Affymetrix [16577313] (imputed)	N
1478	chr9	117088063	117088064	rs10982156	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	9q32	NR	rs10982156-A	0.069716	4E-10		0.0256267	[0.018-0.034] unit increase	Affymetrix [16583148] (imputed)	N
1478	chr9	117088063	117088064	rs10982156	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	9q32	NR	rs10982156-A	0.06954499999999997	5E-14		0.0477036	[0.035-0.06] unit increase	Affymetrix [16577424] (imputed)	N
1478	chr9	117088063	117088064	rs10982156	23381943	Williams FM	2013-01-01	Ann Neurol	Ischemic stroke is associated with the ABO locus: the EuroCLOT study.	End-stage coagulation	2,100 European ancestry individuals	NA	9q32	ORM1	rs10982156-T	0.939	2E-10	(FX)	0.456	[0.31-0.6] unit increase	Illumina [NR] (imputed)	N
1478	chr9	117090005	117090006	rs1687391	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q32	ORM2	rs1687391-T	0.082	2E-12	(Serine protease inhibitor Kazal-type 2, SPINK2.13405.61.3)	0.34	[0.24-0.44] unit increase	Affymetrix [10572788] (imputed)	N
1478	chr9	117090433	117090434	rs3762056	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q32	ORM2	rs3762056-T	0.082	5E-32	(Coagulation factor Xa, F10.3077.66.2)	0.57	[0.47-0.67] unit decrease	Affymetrix [10572788] (imputed)	N
1478	chr9	117090433	117090434	rs3762056	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q32	ORM2	rs3762056-T	0.082	3E-34	(Coagulation Factor X, F10.4878.3.1)	0.59	[0.49-0.69] unit decrease	Affymetrix [10572788] (imputed)	N
1478	chr9	117091073	117091074	rs7040440	35264221	Caron B	2022-03-09	Genome Med	Integrative genetic and immune cell analysis of plasma proteins in healthy donors identifies novel associations involving primary immune deficiency genes.	AGP 1 plasma levels	400 French ancestry individuals	NA	9q32		rs7040440-C	NR	6E-8		0.172	[0.1-0.24] ug/mL increase	Illumina [5201092] (imputed)	N
1478	chr9	117098649	117098650	rs1044531	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	9q32		rs1044531-?	NR	3E-8		0.00895582	[0.0058-0.0121] unit increase	NR [NR]	N
1478	chr9	117098649	117098650	rs1044531	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	9q32		rs1044531-T	NR	1E-10		0.0259	[0.018-0.034] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
1478	chr9	117121839	117121840	rs2787348	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	9q32	NR	rs2787348-C	NR	2E-17		0.0242	[0.019-0.03] unit increase	Affymetrix [9000000] (imputed)	N
1478	chr9	117121839	117121840	rs2787348	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	9q32	NR	rs2787348-C	NR	2E-20		0.0264	[0.021-0.032] unit decrease	Affymetrix [9000000] (imputed)	N
1478	chr9	117129384	117129385	rs2787352	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Alanine transaminase levels in high alcohol intake	34,238 British ancestry individuals	NA	9q32		rs2787352-?	0.4607	7E-10		0.008823	unit increase	NR [6200000] (imputed)	N
1478	chr9	117134190	117134191	rs7043196	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Aspartate aminotransferase levels	386,570 British ancestry individuals, 10,617 Asian or Asian British individuals, 7,426 Black or Black British individuals, 2,321 Chinese ancestry individuals	NA	9q32	AKNA	rs7043196-?	NR	8E-39		0.0033	[0.0027-0.0039] unit decrease	Affymetrix [21347608] (imputed)	N
1478	chr9	117134190	117134191	rs7043196	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Alanine aminotransferase levels	387,859 British ancestry individuals, 10,635 Asian or Asian British individuals, 7,468 Black or Black British individuals, 2,338 Chinese ancestry individuals	NA	9q32	AKNA	rs7043196-?	NR	4E-107		0.009	[0.0082-0.0098] unit decrease	Affymetrix [21347608] (imputed)	N
1478	chr9	117134190	117134191	rs7043196	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Aspartate aminotransferase levels	134,154 Japanese ancestry individuals	NA	9q32	AKNA	rs7043196-?	NR	2E-18		0.034	[0.026-0.042] unit decrease novel	Illumina [6108953] (imputed)	N
1478	chr9	117140081	117140082	rs4979372	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Alanine aminotransferase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	9q32	AKNA	rs4979372-?		1E-40		0.0476	[0.041-0.055] unit decrease	Illumina [31500000] (imputed)	N
1478	chr9	117140081	117140082	rs4979372	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	9q32	AKNA	rs4979372-T	0.511221	2E-13		0.0140592	[0.01-0.018] unit decrease	Affymetrix [NR] (imputed)	N
1478	chr9	117140081	117140082	rs4979372	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	9q32	AKNA	rs4979372-T	0.511303	5E-15		0.0154228	[0.012-0.019] unit decrease	Affymetrix [NR] (imputed)	N
1478	chr9	117140081	117140082	rs4979372	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	9q32	NR	rs4979372-C	0.487128	1E-24		0.00834927	[0.0067-0.01] unit increase	Affymetrix [16582909] (imputed)	N
1478	chr9	117140081	117140082	rs4979372	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	9q32	NR	rs4979372-C	0.487391	3E-28		0.012452	[0.01-0.015] unit increase	Affymetrix [16582621] (imputed)	N
1478	chr9	117140081	117140082	rs4979372	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	9q32	NR	rs4979372-C	0.487128	2E-23		0.00937893	[0.0075-0.0112] unit increase	Affymetrix [16582965] (imputed)	N
1478	chr9	117140081	117140082	rs4979372	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	9q32	NR	rs4979372-C	0.487391	6E-28		0.0131113	[0.011-0.016] unit increase	Affymetrix [16582614] (imputed)	N
1478	chr9	117140081	117140082	rs4979372	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Alanine transaminase levels	134,182 Japanese ancestry individuals	NA	9q32	AKNA	rs4979372-?	NR	2E-34		0.04847	[0.041-0.056] unit decrease	Illumina [6108953] (imputed)	N
1478	chr9	117144503	117144504	rs4979373	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	9q32		rs4979373-T	NR	3E-56		0.0304	[0.027-0.034] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
1478	chr9	117144503	117144504	rs4979373	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	150,068 East Asian ancestry individuals	NA	9q32		rs4979373-T	0.50178	3E-23		0.0348008	[0.028-0.042] unit decrease	Illumina [13478956] (imputed)	N
1478	chr9	117144503	117144504	rs4979373	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	150,545 East Asian ancestry individuals	NA	9q32		rs4979373-T	0.502049	2E-40		0.0456176	[0.039-0.052] unit decrease	Illumina [13478866] (imputed)	N
1478	chr9	117144503	117144504	rs4979373	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	9q32	AKNA	rs4979373-C	0.51	1E-51		15.1	z-score increase	Affymetrix [4314223] (imputed)	N
1478	chr9	117144794	117144795	rs2763193	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	9q32	AKNA	rs2763193-T	0.5751	3E-8		0.0156	[0.01-0.021] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1478	chr9	117146042	117146043	rs7041363	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	9q32		rs7041363-G	NR	3E-136		0.0467	[0.043-0.05] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
1478	chr9	117146042	117146043	rs7041363	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	9q32	AKNA	rs7041363-C	0.511926	1E-136		0.00957417	[0.0088-0.0103] unit increase	Affymetrix [13995440] (imputed)	N
1478	chr9	117146042	117146043	rs7041363	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	9q32	AKNA	rs7041363-C	0.51	8E-124		23.7	z-score increase	Affymetrix [4312306] (imputed)	N
1478	chr9	117146042	117146043	rs7041363	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	9q32	NR	rs7041363-G	NR	2E-9		0.015	[0.01-0.02] unit increase	Affymetrix [9000000] (imputed)	N
1478	chr9	117146042	117146043	rs7041363	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	9q32	NR	rs7041363-G	NR	4E-11		0.0166	[0.012-0.021] unit increase	Affymetrix [9000000] (imputed)	N
1478	chr9	117148326	117148327	rs10739409	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Aspartate aminotransferase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	9q32	AKNA	rs10739409-?		1E-16		0.0321	[0.024-0.04] unit decrease	Illumina [31500000] (imputed)	N
1478	chr9	117149416	117149417	rs10982192	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	9q32	NR	rs10982192-T	0.22133499999999995	2E-8		0.00855494	[0.0055-0.0116] unit increase	Affymetrix [16578495] (imputed)	N
1478	chr9	117149416	117149417	rs10982192	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	9q32	NR	rs10982192-T	0.22168299999999996	6E-11		0.0238068	[0.017-0.031] unit increase	Affymetrix [16577313] (imputed)	N
1478	chr9	117166245	117166246	rs2274159	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	9q32		rs2274159-A	0.5092	6E-14		0.098671734	[0.071-0.126] mmHg decrease	Affymetrix, Illumina [242866] (imputed)	N
1478	chr9	117166245	117166246	rs2274159	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	Total cholesterol levels	up to 237,050 European ancestry individuals, up to 16,935 African ancestry individuals, up to 30,468 South Asian ancestry individuals, up to 8,287 East Asian ancestry individuals, 5,084 Hispanic individuals	up to 286,268 European and unknown ancestry individuals	9q32	NR	rs2274159-G	NR	8E-11		0.012070279	[0.0084-0.0157] unit increase	Illumina [242289]	N
1478	chr9	117166245	117166246	rs2274159	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	Total cholesterol levels	up to 237,050 European ancestry individuals	NA	9q32	NR	rs2274159-G	0.49	4E-8		0.016	unit increase	Illumina [242289]	N
1478	chr9	117177565	117177566	rs74551598	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9q32	NR	rs74551598-A	NR	2E-8		0.03	unit increase	Affymetrix [at least 7091467] (imputed)	N
1478	chr9	117177565	117177566	rs74551598	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9q32	NR	rs74551598-A	0.747	3E-7	(EA)	0.029	unit increase	Affymetrix [at least 7091467] (imputed)	N
1478	chr9	117177565	117177566	rs74551598	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9q32	NR	rs74551598-A	NR	6E-7		0.027	unit increase	Affymetrix [at least 7091467] (imputed)	N
1478	chr9	117177565	117177566	rs74551598	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9q32	NR	rs74551598-A	0.747	2E-6	(EA)	0.028	unit increase	Affymetrix [at least 7091467] (imputed)	N
1479	chr9	117189192	117189193	rs10982213	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-6 levels	8,189 Finnish ancestry individuals	NA	9q32	NR	rs10982213-G	NR	5E-6		0.0802	[0.046-0.115] SD units increase	NR [10700000] (imputed)	N
1479	chr9	117190363	117190364	rs78026734	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	9q32		rs78026734-C	NR	9E-9		0.0156	[0.01-0.021] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
1479	chr9	117190748	117190749	rs12002094	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	9q32	NR	rs12002094-G	NR	1E-24		0.0294	[0.024-0.035] unit decrease	Affymetrix [9000000] (imputed)	N
1479	chr9	117190748	117190749	rs12002094	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	9q32	NR	rs12002094-G	NR	1E-12		0.0205	[0.015-0.026] unit increase	Affymetrix [9000000] (imputed)	N
1479	chr9	117190748	117190749	rs12002094	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	9q32	NR	rs12002094-G	NR	5E-31		0.0332	[0.028-0.039] unit increase	Affymetrix [9000000] (imputed)	N
1479	chr9	117200139	117200140	rs10982218	33002292	Shinohara T	2020-10-01	J Cell Mol Med	Inherited genetic variants associated with glucocorticoid sensitivity in leukaemia cells.	Glucocorticoid receptor gene expression in B-cell precursor acute lymphoblastic leukaemia	72 Japanese ancestry leukaemic cell lines	NA	9q32	DFNB31	rs10982218-?	NR	6E-6				Illumina [331281]	N
1479	chr9	117201398	117201399	rs10817611	28470677	Tang H	2017-05-03	Int J Cancer	Genetic polymorphisms associated with pancreatic cancer survival: a genome-wide association study.	Survival in pancreatic cancer	868 European ancestry cases	820 European ancestry cases	9q32	DFNB31	rs10817611-C	NR	7E-6		1.44	[1.23-1.68]	NR [7738399] (imputed)	N
1479	chr9	117240905	117240906	rs79509430	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	9q32	DFNB31	rs79509430-A	0.068	2E-8	(MCP1 )	0.06	[NR] pg/mL increase	Illumina [899892]	N
1479	chr9	117260833	117260834	rs10982256	21254220	Jiang Y	2011-02-01	Genet Epidemiol	Propensity score-based nonparametric test revealing genetic variants underlying bipolar disorder.	Bipolar disorder	1,868 European ancestry cases, 2,938 European ancestry controls	NA	9q32	NR	rs10982256-?	NR	9E-6	(addtive)			Affymetrix [NR]	N
1479	chr9	117303910	117303911	rs10513249	26297903	Fabbri C	2015-08-20	Prog Neuropsychopharmacol Biol Psychiatry	Genetics of long-term treatment outcome in bipolar disorder.	Depressive episodes in bipolar disorder	723 European ancestry cases	NA	9q32	DFNB31	rs10513249-?	NR	9E-9		0.18	[NR] unit increase	Affymetrix [329806] (imputed)	N
1479	chr9	117303910	117303911	rs10513249	26297903	Fabbri C	2015-08-20	Prog Neuropsychopharmacol Biol Psychiatry	Genetics of long-term treatment outcome in bipolar disorder.	Depressive and manic episodes in bipolar disorder	723 European ancestry cases	NA	9q32	DFNB31	rs10513249-?	NR	5E-7		0.18	[NR] unit increase	Affymetrix [329806]	N
1480	chr9	117314214	117314215	rs10982287	26312577	Tan LJ	2015-08-27	J Clin Endocrinol Metab	Bivariate Genome-Wide Association Study Implicates ATP6V1G1 as a Novel Pleiotropic Locus Underlying Osteoporosis and Age at Menarche.	Bone mineral density (spine) and age at menarche	826 Han Chinese ancestry females	1,728 European ancestry females, 709 African American females, 408 Hispanic/Latin American females	9q32	ATP6V1G1	rs10982287-?		9E-6				Affymetrix [702413]	N
1480	chr9	117322541	117322542	rs10817638	26312577	Tan LJ	2015-08-27	J Clin Endocrinol Metab	Bivariate Genome-Wide Association Study Implicates ATP6V1G1 as a Novel Pleiotropic Locus Underlying Osteoporosis and Age at Menarche.	Bone mineral density (hip) and age at menarche	826 Han Chinese ancestry females	1,728 European ancestry females, 709 African American females, 408 Hispanic/Latin American females	9q32	ATP6V1G1	rs10817638-G		5E-7	(East Asian)			Affymetrix [702413]	N
1480	chr9	117322541	117322542	rs10817638	26312577	Tan LJ	2015-08-27	J Clin Endocrinol Metab	Bivariate Genome-Wide Association Study Implicates ATP6V1G1 as a Novel Pleiotropic Locus Underlying Osteoporosis and Age at Menarche.	Bone mineral density (hip) and age at menarche	826 Han Chinese ancestry females	1,728 European ancestry females, 709 African American females, 408 Hispanic/Latin American females	9q32	ATP6V1G1	rs10817638-?		3E-9				Affymetrix [702413]	N
1480	chr9	117354864	117354865	rs72752535	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Monocyte count	443,529 European ancestry individuals	NA	9q32		rs72752535-?	NR	1E-10		0.0912757	[0.064-0.119] unit increase	NR [9800000] (imputed)	N
1480	chr9	117354864	117354865	rs72752535	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Creatinine levels	437,660 European ancestry individuals	NA	9q32		rs72752535-?	NR	2E-10		0.087051	[0.059-0.115] unit increase	NR [9800000] (imputed)	N
1480	chr9	117354864	117354865	rs72752535	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Aspartate aminotransferase levels	436,275 European ancestry individuals	NA	9q32		rs72752535-?	NR	6E-11		0.0917925	[0.063-0.121] unit decrease	NR [9800000] (imputed)	N
1480	chr9	117396753	117396754	rs77654326	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	9q32	C9orf91	rs77654326-G	0.846244	5E-17	(glycosyl-N-palmitoyl-sphingosine (d18:1/16:0))	0.27	[0.21-0.33] unit increase	Illumina [13039987] (imputed)	N
1480	chr9	117401015	117401016	rs41278671	29346644	Yan Q	2018-01-15	Hum Mol Genet	Genome-wide Analysis of Disease Progression in Age-related Macular Degeneration.	Disease progression in age-related macular degeneration (adjusted for baseline)	1,105 progressed eyes and 3,912 non-progressed eyes from 2,721 European ancestry individuals	NA	9q32	C9orf91	rs41278671-C	0.05	2E-6		1.62		Illumina [8974355] (imputed)	N
1480	chr9	117421665	117421666	rs79660918	30926877	Brcic L	2019-03-29	Sci Rep	Genome-wide association analysis suggests novel loci underlying thyroid antibodies in Hashimoto's thyroiditis.	Anti-thyroid peroxidase (TPOAb) levels in Hashimoto's thyroiditis	405 European ancestry cases	NA	9q32	C9orf91	rs79660918-C	0.919	8E-6		0.576	[0.33-0.82] unit decrease	Illumina [6007542] (imputed)	N
1480	chr9	117429328	117429329	rs147437233	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Word spelling	3,399 European ancestry individuals	NA	9q32	RP11-402G3.3	rs147437233-T	0.945208333	7E-6		0.33633	[0.19-0.48] unit increase	Illumina [6969139] (imputed)	N
1481	chr9	117443066	117443067	rs11793258	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	9q32		rs11793258-G	NR	5E-8		0.0169	[0.011-0.023] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
1481	chr9	117506040	117506040	rs34187268	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	9q32	TNFSF15	rs34187268-TCTC	0.869275	3E-9		1.0553126	[1.03665756666031-1.07430333903184]	NR [9572556] (imputed)	N
1481	chr9	117508436	117508437	rs4978607	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	9q32	TNFSF15	rs4978607-C	0.88	5E-8				NR [> 9500000] (imputed)	N
1481	chr9	117540909	117540910	rs7856856	34022066	Kim KW	2021-05-22	Allergy	Genome-wide association study identifies TNFSF15associated with childhood asthma.	Asthma (childhood onset)	741 Korean ancestry cases, 1,140 Korean ancestry controls	NA	9q32	TNFSF15	rs7856856-?	NR	3E-8		1.819	[1.473-2.245]	Affymetrix, Illumina [4559629] (imputed)	N
1481	chr9	117545665	117545666	rs6478106	23266558	Yamazaki K	2012-12-21	Gastroenterology	A genome-wide association study identifies 2 susceptibility Loci for Crohn's disease in a Japanese population.	Crohn's disease	372 Japanese ancestry cases,3,389 Japanese ancestry controls	Up to 1,151 Japanese ancestry cases, up to 15,800 Japanese ancestry controls	9q32	LOC100129633, LOC645266, TNFSF8, TNFSF15	rs6478106-T	NR	5E-46		1.73	[1.60-1.86]	Illumina [4929034] (imputed)	N
1481	chr9	117549326	117549327	rs7853287	24676358	Viktorin A	2014-03-27	Hum Mol Genet	IgA measurements in over 12 000 Swedish twins reveal sex differential heritability and regulatory locus near CD30L.	Serum IgA levels	9,617 European ancestry individuals	2,785 European ancestry individuals	9q32	CD30L	rs7853287-A	0.2174	3E-10		0.115	[0.073-0.157] g/l increase	Illumina [2226980] (imputed)	N
1481	chr9	117552884	117552885	rs3810936	21102463	Franke A	2010-11-21	Nat Genet	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry trios	9q32	TNFSF8, TNFSF15	rs3810936-C	0.682	1E-15		1.21	[1.15-1.27]	Affymetrix, Illumina [953241] (imputed)	N
1481	chr9	117553248	117553249	rs4246905	26301688	Li YR	2015-08-24	Nat Med	Meta-analysis of shared genetic architecture across ten pediatric autoimmune diseases.	Pediatric autoimmune diseases	97 European ancestry thyroiditis cases, 107 European ancestry ankylosing spondylitis cases, 100 European ancestry psoriasis cases, 173 European ancestry celiac disease cases, 254 European ancestry systemic lupus erythematosus cases, 308 European ancestry common variable inmunodeficiency cases, 865 European ancestry ulcerative colitis cases, 1,086 European ancestry Type 1 diabetes cases, 1,123  European ancestry juvenile idiopathic arthritis cases, 1,922  European ancestry Crohn's disease cases, 10,718 European ancestry controls	NA	9q32	TNFSF15	rs4246905-T	0.28	1E-8				Illumina [7347414] (imputed)	N
1481	chr9	117553248	117553249	rs4246905	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	9q32	NR	rs4246905-G	0.72	1E-15	(EA)	1.1206568		Affymetrix, Illumina [~ 9000000] (imputed)	N
1481	chr9	117553248	117553249	rs4246905	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	9q32	NR	rs4246905-G	0.72	7E-23	(EA)	1.1446497	[1.12-1.17]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1481	chr9	117553248	117553249	rs4246905	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	9q32	TNC, TNFSF8, TNFSF15	rs4246905-C	0.709	3E-32		1.142	[1.106-1.178]	Affymetrix, Illumina [1230000] (imputed)	N
1481	chr9	117553248	117553249	rs4246905	21297633	Anderson CA	2011-02-06	Nat Genet	Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47.	Ulcerative colitis	6,687 European ancestry cases, 19,718 European ancestry controls	9,628 European ancestry cases, 12,917 European ancestry controls	9q32	TNFSF8, TNFSF15	rs4246905-C	0.71	6E-12		1.1	[1.05-1.15]	Affymetrix, Illumina [~ 1100000] (imputed)	N
1481	chr9	117558702	117558703	rs6478108	20018961	Zhang FR	2009-12-16	N Engl J Med	Genomewide association study of leprosy.	Leprosy	706 Han Chinese ancestry cases, 1,225 Han Chinese ancestry controls	3,254 Chinese ancestry cases, 5,955 Chinese ancestry controls	9q32	TNFSF15	rs6478108-A	0.46	3E-21		1.37	[1.28-1.46]	Illumina [491883]	N
1481	chr9	117564874	117564875	rs4366152	25642632	Liu H	2015-02-02	Nat Genet	Discovery of six new susceptibility loci and analysis of pleiotropic effects in leprosy.	Leprosy	1,548 Chinese ancestry cases, 2,150 Chinese ancestry controls, 4,362 Chinese ancestry controls with immune-related diseases	6,765 Chinese ancestry cases, 9,505 Chinese ancestry controls	9q32	TNFSF15	rs4366152-A	0.483	9E-42		1.3333333	[NR]	Illumina [4577171] (imputed)	N
1481	chr9	117566439	117566440	rs4263839	18587394	Barrett JC	2008-06-29	Nat Genet	Genome-wide association defines more than 30 distinct susceptibility loci for Crohn's disease.	Crohn's disease	3,230 European ancestry cases, 4,829 European ancestry controls	1,339 European ancestry trios, 2,325 European ancestry cases, 1,809 European ancestry controls	9q32	TNFSF15	rs4263839-G	0.68	3E-10		1.22	[NR]	Affymetrix, Illumina [635547] (imputed)	N
1481	chr9	117567012	117567013	rs4979462	32554042	Jia X	2020-06-14	Kidney Int	Common risk variants in NPHS1 and TNFSF15 are associated with childhood steroid-sensitive nephrotic syndrome.	Childhood steroid-sensitive nephrotic syndrome	987 Japanese ancestry cases, 3,206 Japanese ancestry controls	249 Korean ancestry cases, 181 South Asian ancestry cases, 207 African ancestry cases, 307 European ancestry cases, 27 Hispanic cases, 85 Maghrebian ancestry cases, 3805 Korean ancestry controls, 8,255 South Asian ancestry controls, 5,657 African ancestry controls, 35,913 European ancestry controls, 5,789 Hispanic controls, 261 Moroccan ancestry controls	9q32	NR	rs4979462-T	NR	5E-11		1.33	[1.22-1.44]	Affymetrix [6834340] (imputed)	N
1481	chr9	117567012	117567013	rs4979462	30643196	Hitomi Y	2019-01-14	Sci Rep	POGLUT1, the putative effector gene driven by rs2293370 in primary biliary cholangitis susceptibility locus chromosome 3q13.33.	Primary biliary cholangitis	1,855 Japanese ancestry cases, 1,719 Japanese ancestry controls	NA	9q32	TNFSF15, TNFSF8	rs4979462-?	NR	2E-26		1.6666665		Affymetrix [NR] (imputed)	N
1481	chr9	117567012	117567013	rs4979462	28062665	Kawashima M	2017-01-05	Hum Mol Genet	Genome-wide association studies identify PRKCB as a novel genetic susceptibility locus for primary biliary cholangitis in the Japanese population.	Primary biliary cholangitis	1,381 Japanese ancestry cases, 1,505 Japanese ancestry controls	512 Japanese ancestry cases, 6,512 Japanese ancestry controls	9q32	TNFSF15	rs4979462-C	0.463	8E-19		1.6006049	[1.442-1.777]	Affymetrix [425290]	N
1481	chr9	117567012	117567013	rs4979462	23000144	Nakamura M	2012-09-18	Am J Hum Genet	Genome-wide association study identifies TNFSF15 and POU2AF1 as susceptibility loci for primary biliary cirrhosis in the Japanese population.	Primary biliary cholangitis	487 Japanese ancestry cases, 476 Japanese ancestry controls	787 Japanese ancestry cases, 615 Japanese ancestry controls	9q32	TNFSF15	rs4979462-T	0.46	3E-14		1.56	[1.39-1.76]	Affymetrix [421245]	N
1481	chr9	117568765	117568766	rs6478109	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	8,021 European ancestry cases, 16,489 European ancestry controls	NA	9q32		rs6478109-A	NR	3E-6		0.10768	[0.063-0.153] unit decrease	NR [5054572] (imputed)	N
1481	chr9	117568765	117568766	rs6478109	26891255	Jung ES	2016-02-18	Inflamm Bowel Dis	HLA-C*01 is a Risk Factor for Crohn's Disease.	Crohn's disease	275 Korean ancestry cases, 2,369 Korean ancestry controls	242 Korean ancestry cases, 1,066 Korean ancestry controls	9q32	TNFSF15	rs6478109-G	0.51	5E-25		2.0833335	[1.82-2.38]	Affymetrix [3387207] (imputed)	N
1481	chr9	117568765	117568766	rs6478109	18758464	Kugathasan S	2008-08-31	Nat Genet	Loci on 20q13 and 21q22 are associated with pediatric-onset inflammatory bowel disease.	Inflammatory bowel disease	1,011 European ancestry cases, 4,250 European ancestry controls	1,922 European ancestry cases, 14,124 European ancestry controls	9q32	TNFSF15	rs6478109-?	0.69	3E-8		1.36	[1.22-1.52]	Illumina [NR]	N
1481	chr9	117569045	117569046	rs7848647	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	9q32	TNFSF15	rs7848647-?	NR	1E-25	(subset analysis)			Illumina [130052]	N
1481	chr9	117569045	117569046	rs7848647	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	9q32	NR	rs7848647-?	NR	3E-35	(EA)			Affymetrix, Illumina [~ 9000000] (imputed)	N
1482	chr9	117575912	117575913	rs55951892	32581322	Kakuta Y	2020-06-24	Sci Rep	An Integrated Genomic and Transcriptomic Analysis Reveals Candidates of Susceptibility Genes for Crohn's Disease in Japanese Populations.	Crohn's disease	713 Japanese ancestry cases, 2,063 Japanese ancestry controls	NA	9q32	TNFSF15	rs55951892-?	NR	2E-23		1.1235955	[1.1-1.16]	NR [7424691] (imputed)	N
1482	chr9	117578373	117578374	rs1322057	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	8,021 European ancestry cases, 16,489 European ancestry controls, 2,495 East Asian ancestry cases, 4,283 East Asian ancestry controls	NA	9q32		rs1322057-G	NR	5E-26		0.43768	[0.36-0.52] unit increase	NR [2787054] (imputed)	N
1482	chr9	117579456	117579457	rs10817678	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	9q32		rs10817678-A	0.343162	1E-31		1.0541825	[1.04-1.06]	Affymetrix, Illumina [9851866] (imputed)	N
1482	chr9	117580913	117580914	rs7869487	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	9q32	NR	rs7869487-?	NR	7E-19	(EA)			Affymetrix, Illumina [~ 9000000] (imputed)	N
1482	chr9	117585896	117585897	rs56211063	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	2,495 East Asian ancestry cases, 4,283 East Asian ancestry controls	NA	9q32		rs56211063-C	NR	9E-26		0.435216	[0.35-0.52] unit increase	NR [5275424] (imputed)	N
1482	chr9	117592004	117592005	rs7468800	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	9q32	intergenic	rs7468800-?	NR	2E-9	(subset analysis)			Illumina [130052]	N
1482	chr9	117592637	117592638	rs2006996	21699788	Okada Y	2011-06-20	Gastroenterology	HLA-Cw*1202-B*5201-DRB1*1502 haplotype increases risk for ulcerative colitis but reduces risk for Crohn's disease.	Ulcerative colitis or Crohn's disease	372 Japanese ancestry Crohn's disease cases, 372 Japanese ancestry ulcerative colitis cases	607 Japanese ancestry Crohn's disease cases, 376 Japanese ancestry ulcerative colitis cases	9q32	TNFSF15	rs2006996-T	0.47	4E-13	(UC vs. CD)	1.67	[1.47-1.92]	Illumina [461368]	N
1482	chr9	117594266	117594267	rs78898421	30500874	Kakuta Y	2018-11-29	J Crohns Colitis	A genome-wide association study identifying RAP1A as a novel susceptibility gene for Crohn's disease in Japanese individuals.	Crohn's disease	713 Japanese ancestry cases, 2,083 Japanese ancestry controls	770 Japanese ancestry cases, 852 Japanese ancestry controls	9q32	TNFSF15, TNFSF8	rs78898421-?	0.47	3E-26		2.1	NR	NR [4335144] (imputed)	N
1482	chr9	117605069	117605070	rs11554257	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	9q32	NR	rs11554257-G	0.1294	4E-21	(EA)	1.1484206	[1.12-1.18]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1482	chr9	117605069	117605070	rs11554257	20848476	Haritunians T	2010-11-01	Inflamm Bowel Dis	Genetic predictors of medically refractory ulcerative colitis.	Ulcerative colitis	324 European ancestry medically refractory ulcerative colitis cases, 537 European ancestry non-medically refractory ulcerative colitis cases, 2,601 European ancestry controls	NA	9q32	TNFSF15	rs11554257-G	NR	1E-6	(Analysis III)	1.82	[NR]	Illumina [313720]	N
1482	chr9	117618308	117618309	rs16931910	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	9q32	Intergenic	rs16931910-C	NR	3E-6		0.0424496	[0.025-0.06] unit increase	Illumina [13520550] (imputed)	N
1482	chr9	117628527	117628528	rs7043505	33106285	Lopez-Isac E	2020-10-26	Ann Rheum Dis	Combined genetic analysis of juvenile idiopathic arthritis clinical subtypes identifies novel risk loci, target genes and key regulatory mechanisms.	Arthritis (juvenile idiopathic)	3,305 European ancestry cases, 9,196 European ancestry controls	2,751 European ancestry cases, 15,886 European ancestry controls	9q32	TNFSF8	rs7043505-A	NR	8E-8		1.12	[1.07-1.17]	Illumina [7461261] (imputed)	N
1482	chr9	117630042	117630043	rs4979467	28425483	Qiu F	2017-04-20	Nat Commun	A genome-wide association study identifies six novel risk loci for primary biliary cholangitis.	Primary biliary cholangitis	1,122 Han Chinese ancestry cases, 4,036 Han Chinese ancestry controls	907 Han Chinese ancestry cases, 2,127 Han Chinese ancestry controls	9q32	TNFSF15, TNFSF8	rs4979467-A	0.322	1E-29		1.53	[1.42-1.64]	Illumina [776516]	N
1482	chr9	117642417	117642418	rs7863183	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	9q32	TNFSF15	rs7863183-?	NR	1E-6	(DAG 36:1)	0.1639302	[0.098-0.23] unit increase	Affymetrix [at least 2500000] (imputed)	N
1482	chr9	117643361	117643362	rs13300483	27569725	Yang SK	2016-08-25	Gastroenterology	Identification of Loci at 1q21 and 16q23 That Affect Susceptibility to Inflammatory Bowel Disease in Koreans.	Inflammatory bowel disease	1,505 Korean ancestry cases, 4,041 Korean ancestry controls	1,989 Korean ancestry cases, 3,491 Korean ancestry controls	9q32	TNFSF15, TNFSF8	rs13300483-A	0.34	2E-27				Illumina [522285]	N
1482	chr9	117643361	117643362	rs13300483	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	9q32	NR	rs13300483-A	0.2394	6E-16	(EA)	1.0976037	[1.08-1.12]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1482	chr9	117645561	117645562	rs7032773	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR+ T cell%lymphocyte	3,596 Sardinian (founder/genetic isolate) ancestry individuals	NA	9q32		rs7032773-T	0.4182	5E-10		0.1552	[0.11-0.2] unit decrease	Illumina [18380873] (imputed)	N
1482	chr9	117645561	117645562	rs7032773	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR+ T cell%T cell	3,596 Sardinian (founder/genetic isolate) ancestry individuals	NA	9q32		rs7032773-T	0.4182	1E-9		0.1471	[0.1-0.195] unit decrease	Illumina [18380873] (imputed)	N
1482	chr9	117645561	117645562	rs7032773	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR+ CD4+ T cell %lymphocyte	3,595 Sardinian (founder/genetic isolate) ancestry individuals	NA	9q32		rs7032773-T	0.41818	1E-8		0.1334	[0.087-0.179] unit decrease	Illumina [18380839] (imputed)	N
1482	chr9	117649135	117649136	rs2181036	33393726	Ortiz Fernandez L	2021-01-04	Arthritis Rheumatol	Genetic association of a gain of function interferon gamma receptor 1 (IFNGR1) polymorphism and the intergenic region LNCAROD/DKK1 with Behcet's disease.	Behcet's disease	2,344 Turkish ancestry cases, 1,920 Turkish ancestry controls, 437 European ancestry cases, 3,325 European ancestry controls, 312 East Asian ancestry cases, 398 East Asian ancestry controls, 104 Tunisian ancestry cases, 142 Tunisian ancestry controls	NA	9q32	TNFSF15, TSFSF8	rs2181036-C	NR	8E-8		0.8166	NR	Illumina [up to 1244428] (imputed)	N
1482	chr9	117649135	117649136	rs2181036	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR+ CD8+ T cell Absolute Count	3,579 Sardinian (founder/genetic isolate) ancestry individuals	NA	9q32		rs2181036-C	0.41687	3E-8		0.1446	[0.093-0.196] unit decrease	Illumina [18377359] (imputed)	N
1482	chr9	117660932	117660933	rs1322067	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR+ CD4+ T cell Absolute Count	3,579 Sardinian (founder/genetic isolate) ancestry individuals	NA	9q32		rs1322067-G	0.41729	5E-9		0.1511	[0.1-0.2] unit decrease	Illumina [18377359] (imputed)	N
1482	chr9	117665378	117665379	rs1126711	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	9q33.1		rs1126711-G	NR	1E-16		0.0137	[0.011-0.017] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
1482	chr9	117676832	117676833	rs12338765	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	9q33.1	TNFSF8	rs12338765-C	0.434677	2E-28		0.024665466	[0.02-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
1482	chr9	117676832	117676833	rs12338765	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	9q33.1	TNFSF8	rs12338765-C	0.434698	2E-24		0.02272192	[0.018-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1482	chr9	117690757	117690758	rs10982456	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	9q33.1		rs10982456-?	NR	6E-31				NR [~ 8900000] (imputed)	N
1482	chr9	117690757	117690758	rs10982456	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	9q33.1	TNFSF8	rs10982456-C	0.4349	5E-13		0.02603934	[0.019-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
1482	chr9	117690757	117690758	rs10982456	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	9q33.1	TNFSF8	rs10982456-C	0.4349	5E-13		0.02588258	[0.019-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1482	chr9	117690757	117690758	rs10982456	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	9q33.1	TNFSF8	rs10982456-C	0.4348	1E-13		0.02664026	[0.02-0.034] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1482	chr9	117692881	117692882	rs3181356	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	IgA levels	16,883 Icelandic ancestry individuals	2,151 Swedish ancestry individuals	9q33.1	TNFSF8	rs3181356-T	0.23	7E-8		0.07	NR SD units increase	Illumina [21568490] (imputed)	N
1482	chr9	117692881	117692882	rs3181356	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	Composite immunoglobulin trait (IgA/IgG)	14,183 Icelandic ancestry individuals	2,146 Swedish ancestry individuals	9q33.1	TNFSF8	rs3181356-T	0.2305	2E-7		0.08	NR SD units increase	Illumina [21568490] (imputed)	N
1482	chr9	117693630	117693631	rs2075533	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	9q33.1	TNFSF8, TNC	rs2075533-G	0.572	2E-7		0.0274241	[0.017-0.038] unit increase	Illumina [13520550] (imputed)	N
1482	chr9	117694183	117694184	rs3181348	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	9q33.1	TNFSF8	rs3181348-A	0.4142	2E-10		0.02320562	[0.016-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1482	chr9	117696335	117696336	rs726657	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	9q33.1	TNFSF8	rs726657-T	0.4071	3E-11		0.02429508	[0.017-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1482	chr9	117696335	117696336	rs726657	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	9q33.1	TNFSF8	rs726657-?	NR	1E-14	(subset analysis)			Illumina [130052]	N
1482	chr9	117697583	117697584	rs911603	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	9q33.1	NR	rs911603-A	0.40355	1E-33		0.024681	[0.021-0.029] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
1482	chr9	117697659	117697660	rs1322060	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q33.1	NR	rs1322060-G	0.398326	3E-32				Affymetrix, Illumina [19872809] (imputed)	N
1482	chr9	117699849	117699850	rs10817686	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	9q33.1	TNC	rs10817686-?	NR	2E-6	(betaine)	0.45609462	[0.27-0.64] unit increase	Affymetrix [at least 2500000] (imputed)	N
1483	chr9	117705968	117705969	rs10817688	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	9q33.1	Intergenic	rs10817688-A	0.818	9E-7		0.076	NR unit increase	Illumina [NR] (imputed)	N
1483	chr9	117754571	117754572	rs200384196	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cerebral amyloid deposition in APOEe4 non-carriers (PET imaging)	370 European and other ancestry APOEe4 non-carriers	NA	9q33.1	intergenic	rs200384196-CT	NR	1E-6		0.3678	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
1483	chr9	117768679	117768680	rs4979489	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal cancer	978 Austrian ancestry cases, 4,294 European ancestry controls	NA	9q33.1	Intergenic	rs4979489-?		9E-6		1.3310263	[NR]	Affymetrix [492217] (imputed)	N
1483	chr9	117778354	117778355	rs1888221	25524916	Palmer ND	2014-12-18	Diabetes	Genetic Variants Associated With Quantitative Glucose Homeostasis Traits Translate to Type 2 Diabetes in Mexican Americans: The GUARDIAN (Genetics Underlying Diabetes in Hispanics) Consortium.	Glucose homeostasis traits	up to 4,176 Mexican American individuals	NA	9q33.1	intergenic	rs1888221-?		3E-6	(M)	19.08	[10.65-27.51] unit increase	Illumina [693128]	N
1483	chr9	117804026	117804027	rs12343737	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	9q33.1	NR	rs12343737-C	0.8958	2E-8		1.0564125	[1.04-1.08]	Affymetrix [15688218] (imputed)	N
1483	chr9	117804666	117804667	rs7021589	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TNC	5,367 Icelandic ancestry individuals	NA	9q33.1		rs7021589-C	0.173	4E-299		0.832314	[0.79-0.88] unit increase	Illumina [7506463] (imputed)	N
1483	chr9	117804666	117804667	rs7021589	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein POFUT2	5,358 Icelandic ancestry individuals	NA	9q33.1		rs7021589-C	0.173	5E-48		0.344266	[0.3-0.39] unit decrease	Illumina [7506463] (imputed)	N
1483	chr9	117804666	117804667	rs7021589	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	9q33.1	NR	rs7021589-?	NR	2E-63	(EA, Tenascin)			Affymetrix [509946]	N
1483	chr9	117805200	117805201	rs72758637	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	9q33.1	NR	rs72758637-C	0.82328125	7E-28	(POFUT2, 6042_52_3)	0.34369683	[0.28-0.4] unit increase	Illumina [> 1000000] (imputed)	N
1483	chr9	117805200	117805201	rs72758637	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	9q33.1	NR	rs72758637-C	0.82328125	3E-289	(CELA1, 6107_3_3)	1.0643327	[1.01-1.12] unit increase	Illumina [> 1000000] (imputed)	N
1483	chr9	117805200	117805201	rs72758637	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	9q33.1	NR	rs72758637-C	0.82328125	3E-25	(EVA1C, 7008_13_3)	0.33348146	[0.27-0.4] unit increase	Illumina [> 1000000] (imputed)	N
1483	chr9	117805200	117805201	rs72758637	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	9q33.1	NR	rs72758637-C	0.82328125	3E-156	(TNC, 4155_3_2)	0.8095543	[0.75-0.87] unit decrease	Illumina [> 1000000] (imputed)	N
1483	chr9	117805200	117805201	rs72758637	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	9q33.1	NR	rs72758637-C	0.82328125	2E-333	(PRELP, 5675_6_3)	1.1282725	[1.08-1.18] unit increase	Illumina [> 1000000] (imputed)	N
1483	chr9	117805200	117805201	rs72758637	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	9q33.1	NR	rs72758637-C	0.82328125	2E-225	(CETP, 7131_207_3)	0.95712954	[0.9-1.01] unit increase	Illumina [> 1000000] (imputed)	N
1483	chr9	117824331	117824332	rs5010187	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	9q33.1	TNC	rs5010187-A	0.5008	6E-12		0.013	[0.0093-0.0167] unit increase	Affymetrix [18391927] (imputed)	N
1484	chr9	117835898	117835899	rs1138545	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q33.1	TNC	rs1138545-T	0.153	7E-73	(Protein eva-1 homolog C, EVA1C.7008.13.3)	0.59	[0.53-0.65] unit decrease	Affymetrix [10572788] (imputed)	N
1484	chr9	117835898	117835899	rs1138545	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q33.1	TNC	rs1138545-T	0.153	6E-146	(GDP-fucose protein O-fucosyltransferase 2, POFUT2.6042.52.3)	0.81	[0.75-0.87] unit decrease	Affymetrix [10572788] (imputed)	N
1484	chr9	117835898	117835899	rs1138545	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q33.1	TNC	rs1138545-T	0.153	3E-167	(Tenascin, TNC.4155.3.2)	0.85	[0.79-0.91] unit increase	Affymetrix [10572788] (imputed)	N
1484	chr9	117835898	117835899	rs1138545	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q33.1	TNC	rs1138545-T	0.153	2E-489	(Prolargin, PRELP.5675.6.3)	1.25	[1.19-1.31] unit decrease	Affymetrix [10572788] (imputed)	N
1484	chr9	117840741	117840742	rs1330349	34450027	Boer CG	2021-08-24	Cell	Deciphering osteoarthritis genetics across 826,690 individuals from 9 populations.	Osteoarthritis (with total hip replacement)	23,021 European ancestry cases, 296,016 European ancestry controls	NA	9q33.1		rs1330349-C	0.589	6E-17		1.0974617	[1.073843641-1.121599286]	Affymetrix, Illumina [NR] (imputed)	N
1484	chr9	117840741	117840742	rs1330349	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Osteoarthritis (hip)	15,704 European ancestry cases, 378,169 European ancestry controls	NA	9q33.1	NR	rs1330349-C	0.58	4E-11		1.08	[1.06-1.11]	Affymetrix, Illumina [up to 17000000] (imputed)	N
1484	chr9	117842306	117842307	rs2480930	30374069	Styrkarsdottir U	2018-10-29	Nat Genet	Meta-analysis of Icelandic and UK data sets identifies missense variants in SMO, IL11, COL11A1 and 13 more new loci associated with osteoarthritis.	Osteoarthritis (hip)	17,151 European ancestry cases, 596,639 European ancestry controls	NA	9q33.1	TNC	rs2480930-A	NR	7E-12	(additive)	1.09	[1.06-1.11]	Affymetrix, Illumina [11554240] (imputed)	N
1484	chr9	117856817	117856818	rs112106319	27622933	Li QS	2016-09-13	Transl Psychiatry	Analysis of 23andMe antidepressant efficacy survey data: implication of circadian rhythm and neuroplasticity in bupropion response.	Response to bupropion and depression	2,675 European ancestry responder cases, 191,986 European ancestry healthy controls	NA	9q33.1	TNC	rs112106319-?		1E-6		2.3255813	[1.59-3.4]	Illumina [~ 12000000] (imputed)	N
1484	chr9	117866423	117866424	rs1273108	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	9q33.1	NR	rs1273108-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
1484	chr9	117869929	117869930	rs1250023	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9q33.1		rs1250023-?	NR	2E-19				NR [~ 8900000] (imputed)	N
1484	chr9	117875680	117875681	rs3789868	27016271	Kornilov SA	2016-03-25	Pediatrics	Genome-Wide Association and Exome Sequencing Study of Language Disorder in an Isolated Population.	Developmental language disorder (syntactic complexity)	149 isolated population cases, 210 isolated population controls	NA	9q33.1	TNC	rs3789868-G	0.47	4E-6				Illumina [223580]	N
1484	chr9	117875687	117875688	rs3789867	27016271	Kornilov SA	2016-03-25	Pediatrics	Genome-Wide Association and Exome Sequencing Study of Language Disorder in an Isolated Population.	Developmental language disorder (syntactic complexity)	149 isolated population cases, 210 isolated population controls	NA	9q33.1	TNC	rs3789867-?	0.469	3E-6	(Mean utterance length)	0.345	[0.2-0.49] unit decrease	Illumina [223580]	N
1484	chr9	117877062	117877063	rs10982544	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q33.1	NR	rs10982544-C	0.058	8E-17	(Tenascin, TNC.4155.3.2)	0.44	[0.34-0.54] unit decrease	Affymetrix [10572788] (imputed)	N
1484	chr9	117878910	117878911	rs7029844	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TNC	5,367 Icelandic ancestry individuals	NA	9q33.1		rs7029844-A	0.2973	6E-11		0.136698	[0.096-0.178] unit increase	Illumina [7506463] (imputed)	N
1484	chr9	117878910	117878911	rs7029844	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SFTPC	5,364 Icelandic ancestry individuals	NA	9q33.1		rs7029844-A	0.2973	6E-53		0.311547	[0.27-0.35] unit decrease	Illumina [7506463] (imputed)	N
1484	chr9	117878910	117878911	rs7029844	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FAM163A	5,363 Icelandic ancestry individuals	NA	9q33.1		rs7029844-A	0.2973	4E-33		0.243925	[0.2-0.28] unit decrease	Illumina [7506463] (imputed)	N
1484	chr9	117878910	117878911	rs7029844	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CETP	5,363 Icelandic ancestry individuals	NA	9q33.1		rs7029844-A	0.2973	4E-294		0.687525	[0.65-0.72] unit decrease	Illumina [7506463] (imputed)	N
1484	chr9	117878910	117878911	rs7029844	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CELA1	5,362 Icelandic ancestry individuals	NA	9q33.1		rs7029844-A	0.2973	1E-258		0.63934	[0.6-0.68] unit decrease	Illumina [7506463] (imputed)	N
1484	chr9	117879967	117879968	rs57814325	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q33.1	NR	rs57814325-A	0.225	7E-13	(Tenascin, TNC.4155.3.2)	0.21	[0.15-0.27] unit increase	Affymetrix [10572788] (imputed)	N
1484	chr9	117880127	117880127	rs3833490	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q33.1	TNC	rs3833490-CT	0.287	6E-224	(Prolargin, PRELP.5675.6.3)	0.76	[0.72-0.8] unit decrease	Affymetrix [10572788] (imputed)	N
1484	chr9	117880127	117880127	rs3833490	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q33.1	TNC	rs3833490-CT	0.287	3E-29	(Protein FAM163A, FAM163A.6260.14.3)	0.3	[0.24-0.36] unit decrease	Affymetrix [10572788] (imputed)	N
1484	chr9	117880127	117880127	rs3833490	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q33.1	TNC	rs3833490-CT	0.287	2E-42	(Pulmonary surfactant-associated protein C, SFTPC.5738.25.3)	0.36	[0.3-0.42] unit decrease	Affymetrix [10572788] (imputed)	N
1484	chr9	117880791	117880792	rs2071520	26584805	Dorajoo R	2015-11-19	Genes Nutr	A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.	Plasma omega-3 polyunsaturated fatty acid level (eicosapentaenoic acid)	717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls	NA	9q33.1	NR	rs2071520-G	0.2689	3E-6		0.0957	[0.056-0.136] unit increase	Illumina [up to 1980188] (imputed)	N
1484	chr9	117887630	117887631	rs7858535	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein EVA1C	5,362 Icelandic ancestry individuals	NA	9q33.1		rs7858535-C	0.3022	4E-58		0.327171	[0.29-0.37] unit decrease	Illumina [7506463] (imputed)	N
1484	chr9	117890566	117890567	rs12376870	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		9q33.1	TNC	rs12376870-G	0.762383	4E-8		0.00886599	[0.0057-0.012] unit increase	Affymetrix [12370749]	N
1484	chr9	117890566	117890567	rs12376870	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	9q33.1	NR	rs12376870-?	NR	4E-9				Affymetrix [~ 8270000] (imputed)	N
1484	chr9	117890566	117890567	rs12376870	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	9q33.1		rs12376870-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1484	chr9	117900293	117900293	rs35157100	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q33.1	NR	rs35157100-GA	0.287	3E-96	(GDP-fucose protein O-fucosyltransferase 2, POFUT2.6042.52.3)	0.53	[0.47-0.59] unit decrease	Affymetrix [10572788] (imputed)	N
1484	chr9	117900293	117900293	rs35157100	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q33.1	NR	rs35157100-GA	0.287	3E-29	(Protein FAM163A, FAM163A.6260.14.3)	0.3	[0.24-0.36] unit decrease	Affymetrix [10572788] (imputed)	N
1484	chr9	117900293	117900293	rs35157100	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q33.1	NR	rs35157100-GA	0.287	2E-42	(Pulmonary surfactant-associated protein C, SFTPC.5738.25.3)	0.36	[0.3-0.42] unit decrease	Affymetrix [10572788] (imputed)	N
1484	chr9	117901584	117901585	rs2480934	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9q33.1	NR	rs2480934-G	0.01742	9E-10	(SPRYD4)	0.119	NR unit increase	Illumina [1671387] (imputed)	N
1484	chr9	117902065	117902066	rs4979503	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q33.1	NR	rs4979503-C	0.289	6E-89	(Protein eva-1 homolog C, EVA1C.7008.13.3)	0.51	[0.45-0.57] unit decrease	Affymetrix [10572788] (imputed)	N
1484	chr9	117928418	117928419	rs7866181	28886342	Ng M	2017-09-07	Am J Hum Genet	A Genome-wide Association Study of Dupuytren Disease Reveals 17 Additional Variants Implicated in Fibrosis.	Dupuytren's disease	3,871 European ancestry cases, 4,686 European ancestry controls	4,041 European and unknown ancestry cases, 8,251 European and unknown ancestry controls	9q33.1	NR	rs7866181-T	0.303	5E-6		1.113	[1.063-1.166]	Illumina [238825]	N
1485	chr9	117982238	117982239	rs10982617	34409643	Freitag-Wolf S	2021-08-18	J Clin Periodontol	Sex-specific genetic factors affect the risk of early-onset periodontitis in Europeans.	Early onset periodontitis x sex interaction	545 Dutch ancestry women, 351 Dutch ancestry men	NA	9q33.1		rs10982617-?	NR	6E-7				Illumina [79780573] (imputed)	N
1485	chr9	117996223	117996224	rs2989505	28470677	Tang H	2017-05-03	Int J Cancer	Genetic polymorphisms associated with pancreatic cancer survival: a genome-wide association study.	Survival in pancreatic cancer	868 European ancestry cases	820 European ancestry cases	9q33.1	intergenic	rs2989505-T	NR	3E-6		1.43	[1.23-1.66]	NR [7738399] (imputed)	N
1485	chr9	117998885	117998886	rs72762373	29313844	Willems SM	2017-07-12	Nat Commun	Large-scale GWAS identifies multiple loci for hand grip strength providing biological insights into muscular fitness.	Hand grip strength	142,035 European ancestry individuals	53,145 European ancestry individuals	9q33.1	DEC1	rs72762373-A	0.03	2E-8		0.4181	[0.27-0.56] kg increase	Affymetrix [at least 17000000] (imputed)	N
1485	chr9	118039986	118039987	rs148580205	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	9q33.1	NR	rs148580205-?	NR	3E-8				Illumina [7760689] (imputed)	N
1485	chr9	118042352	118042353	rs1414153	28470677	Tang H	2017-05-03	Int J Cancer	Genetic polymorphisms associated with pancreatic cancer survival: a genome-wide association study.	Survival in pancreatic cancer	868 European ancestry cases	820 European ancestry cases	9q33.1	intergenic	rs1414153-C	NR	2E-6		1.41	[1.23-1.62]	NR [7738399] (imputed)	N
1485	chr9	118044632	118044633	rs1100324	33232274	Mohammadnejad A	2020-11-24	Aging (Albany NY)	Generalized correlation coefficient for genome-wide association analysis of cognitive ability in twins.	Cognitive function (generalized correlation coefficient)	900 Danish ancestry dizygotic twins, 272 Danish ancestry monozygotic twins	NA	9q33.1	NR	rs1100324-?	NR	2E-7			[NR]	Illumina [5779266] (imputed)	N
1485	chr9	118050413	118050414	rs7853844	28470677	Tang H	2017-05-03	Int J Cancer	Genetic polymorphisms associated with pancreatic cancer survival: a genome-wide association study.	Survival in pancreatic cancer	868 European ancestry cases	820 European ancestry cases	9q33.1	intergenic	rs7853844-A	NR	2E-6		1.44	[1.24-1.67]	NR [7738399] (imputed)	N
1485	chr9	118050413	118050414	rs7853844	23180869	Wu C	2012-11-24	Gut	Genome-wide association study of survival in patients with pancreatic adenocarcinoma.	Pancreatic cancer	642 European ancestry cases	363 Chinese ancestry cases	9q33.1	intergenic	rs7853844-A	0.17	2E-6		1.43	[1.23-1.65]	Illumina [2731086] (imputed)	N
1485	chr9	118077374	118077374	rs376886874	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris heterochromicity	329 South Asian ancestry individuals		9q33.1	DMBT1	rs376886874-AT	0.07	3E-6		0.786	[0.46-1.11] unit increase	Illumina [640625] (imputed)	N
1486	chr9	118117398	118117399	rs35796756	29520036	Stein MB	2018-03-08	Mol Psychiatry	Genome-wide analysis of insomnia disorder.	Insomnia	2,297 European American cases, 334 African American cases, 606 Latino American cases, 9,176 European American controls, 2,345 African American controls, 2,893 Latino American controls	NA	9q33.1	DEC1	rs35796756-A	NR	8E-7	(Hispanic)	2.89		Illumina [at least 360704] (imputed)	N
1486	chr9	118121693	118121694	rs10982711	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SFTPC	5,364 Icelandic ancestry individuals	NA	9q33.1		rs10982711-C	0.4505	4E-8		0.103006	[0.066-0.14] unit increase	Illumina [7506463] (imputed)	N
1486	chr9	118121702	118121703	rs10982712	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-9 levels	3,634 Finnish ancestry individuals	NA	9q33.1	NR	rs10982712-C		6E-6		0.1111	[0.063-0.159] SD units decrease	NR [10700000] (imputed)	N
1486	chr9	118143932	118143933	rs10817758	25642632	Liu H	2015-02-02	Nat Genet	Discovery of six new susceptibility loci and analysis of pleiotropic effects in leprosy.	Leprosy	1,548 Chinese ancestry cases, 2,150 Chinese ancestry controls, 4,362 Chinese ancestry controls with immune-related diseases	6,765 Chinese ancestry cases, 9,505 Chinese ancestry controls	9q33.1	DEC1	rs10817758-T	0.367	1E-8		1.13	[NR]	Illumina [4577171] (imputed)	N
1486	chr9	118165672	118165673	rs9409150	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	9q33.1	GMNC	rs9409150-?		9E-11				NR [7428630] (imputed)	N
1486	chr9	118202715	118202716	rs9409154	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue adjusted for BMI	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	9q33.1	intergenic	rs9409154-C	0.12	2E-6	(Women)			Affymetrix, Illumina [2500000] (imputed)	N
1486	chr9	118203378	118203379	rs74489103	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Pappalysin-1 levels	21,758 European ancestry individuals	9,173 individuals	9q33.1		rs74489103-T	0.028	6E-10		0.2007	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1486	chr9	118209070	118209071	rs7847231	25201988	Rietveld CA	2014-09-08	Proc Natl Acad Sci U S A	Common genetic variants associated with cognitive performance identified using the proxy-phenotype method.	Educational attainment	106,736 European ancestry individuals	NA	9q33.1	DEC1	rs7847231-A	0.62	7E-6		0.02	[NR] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1486	chr9	118217959	118217960	rs10982755	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	9q33.1	DEC1304	rs10982755-?		1E-8				NR [7428630] (imputed)	N
1487	chr9	118236473	118236474	rs10982759	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	9q33.1	NR	rs10982759-?	NR	4E-7		0.0455	[0.028-0.063] unit increase	Illumina [at least 560000] (imputed)	N
1487	chr9	118244021	118244022	rs10121366	31212010	Cabana-Dominguez J	2019-06-15	Prog Neuropsychopharmacol Biol Psychiatry	Genome-wide association meta-analysis of cocaine dependence: Shared genetics with comorbid conditions.	Cocaine dependence	2,085 European ancestry cases, 4,293 European ancestry controls	NA	9q33.1	intergenic	rs10121366-T	NR	7E-6		0.2785	[0.16-0.4] unit decrease	Illumina [9290362] (imputed)	N
1487	chr9	118271583	118271584	rs2213920	27143689	Hertz DL	2016-05-03	Clin Cancer Res	Pharmacogenetic Discovery in CALGB (Alliance) 90401 and Mechanistic Validation of a VAC14 Polymorphism that Increases Risk of Docetaxel-Induced Neuropathy.	Docetaxel-induced peripheral neuropathy in metastatic castrate-resistant prostate cancer	50 European ancestry cases with neuropathy, 573 European ancestry cases without neuropathy	NA	9q33.1	Intergenic	rs2213920-?	NR	5E-6		2.63	[1.70-4.06]	Illumina [498081]	N
1487	chr9	118279488	118279489	rs9408874	33898419	Mukhopadhyay N	2021-04-09	Front Cell Dev Biol	Genome-Wide Association Study of Non-syndromic Orofacial Clefts in a Multiethnic Sample of Families and Controls Identifies Novel Regions.	Nonsyndromic cleft lip with or without cleft palate	154 African ancestry cases, 274 African ancestry controls, 445 Asian ancestry cases, 1,246 Asian ancestry controls, 569 European ancestry cases, 2,704 European ancestry controls, 1,050 Central and South American cases, 2,988 Central and South American controls, 3 cases, 14 controls	NA	9q33.1	NR	rs9408874-T		3E-7	(EA)	0.26	[0.16-0.36] unit increase	Illumina [NR] (imputed)	N
1487	chr9	118280679	118280680	rs7854043	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	9q33.1		rs7854043-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1487	chr9	118290106	118290107	rs10817784	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Varicose veins	22,037 European ancestry cases, 437,665 European ancestry controls, 474 East Asian ancestry cases, 178,252 East Asian ancestry controls	NA	9q33.1		rs10817784-G	NR	1E-10		0.1028	[0.071-0.134] unit increase	Affymetrix, Illumina [25842955] (imputed)	N
1487	chr9	118296828	118296829	rs7469817	30566020	Fukaya E	2018-12-01	Circulation	Clinical and Genetic Determinants of Varicose Veins.	Varicose veins	9,577 British ancestry cases, 327,959 British ancestry controls	NA	9q33.1	NR	rs7469817-C	0.74	1E-10		0.112	[0.079-0.145] unit increase	Affymetrix [10972371] (imputed)	N
1487	chr9	118309022	118309023	rs112723784	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9q33.1		rs112723784-?	NR	9E-13				NR [~ 8900000] (imputed)	N
1487	chr9	118309050	118309051	rs62576695	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	9q33.1		rs62576695-T	0.120563	6E-16		0.0249519	[0.019-0.031] unit increase	Illumina [13479295] (imputed)	N
1487	chr9	118309050	118309051	rs62576695	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	9q33.1	DEC1, LOC101928775	rs62576695-?	NR	3E-16		0.03577134	[0.027-0.044] unit increase	Illumina [27896057] (imputed)	N
1487	chr9	118311238	118311239	rs10817791	29921221	Cha S	2018-06-19	BMC Genomics	Identification of five novel genetic loci related to facial morphology by genome-wide association studies.	Nose morphology	5,643 Korean ancestry individuals	up to 1,940 Korean ancestry individuals	9q33.1	DEC1, LOC101928775	rs10817791-C	0.37	4E-6	(Nasal bridge depth)	0.26	[NR] unit increase	Affymetrix [311944]	N
1487	chr9	118330051	118330052	rs149109490	32928877	Jung SY	2020-09-14	Cancer Prev Res (Phila)	Genome-wide association analysis of pro-inflammatory cytokines and gene-lifestyle interaction for invasive breast cancer risk: the WHI dbGaP Study.	Serum interleukin-6 concentration in non-visceral-obese individuals	7,251 European ancestry women	NA	9q33.1	DEC1	rs149109490-?		3E-8		3.61	NR	Affymetrix, Illumina [21784812] (imputed)	N
1487	chr9	118330051	118330052	rs149109490	32928877	Jung SY	2020-09-14	Cancer Prev Res (Phila)	Genome-wide association analysis of pro-inflammatory cytokines and gene-lifestyle interaction for invasive breast cancer risk: the WHI dbGaP Study.	Serum interleukin-6 concentration in high fat diet	7,873 European ancestry women	NA	9q33.1	DEC1	rs149109490-?		4E-8		3.19	[NR]	Affymetrix, Illumina [21784812] (imputed)	N
1487	chr9	118330051	118330052	rs149109490	32928877	Jung SY	2020-09-14	Cancer Prev Res (Phila)	Genome-wide association analysis of pro-inflammatory cytokines and gene-lifestyle interaction for invasive breast cancer risk: the WHI dbGaP Study.	Serum interleukin-6 concentration	10,798 European ancestry women	NA	9q33.1	DEC1	rs149109490-?		4E-8		2.81	NR	Affymetrix, Illumina [21784812] (imputed)	N
1487	chr9	118343025	118343026	rs7862601	34450027	Boer CG	2021-08-24	Cell	Deciphering osteoarthritis genetics across 826,690 individuals from 9 populations.	Osteoarthritis (hip)	36,445 European ancestry cases, 316,943 European ancestry controls	NA	9q33.1		rs7862601-A	0.6244	6E-9		0.9386618	[0.918821317-0.958930774]	Affymetrix, Illumina [NR] (imputed)	N
1487	chr9	118351010	118351011	rs7859905	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	9q33.1		rs7859905-A	NR	6E-10		0.0153	[0.01-0.02] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
1487	chr9	118351010	118351011	rs7859905	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	145,445 East Asian ancestry individuals	NA	9q33.1		rs7859905-A	0.193286	4E-9		0.025014	[0.017-0.033] unit increase	Illumina [13477769] (imputed)	N
1487	chr9	118351010	118351011	rs7859905	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	9q33.1	OBFC1, SLK	rs7859905-A	0.19	2E-6	(Japanese)	0.4484	[0.26-0.63] unit increase	Illumina [6200000] (imputed)	N
1487	chr9	118351010	118351011	rs7859905	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Pulse pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 Japanese ancestry individuals	9q33.1	OBFC1, SLK	rs7859905-A	0.1935	2E-8	(Japanese)	0.3634	[0.24-0.49] unit increase	Illumina [6200000] (imputed)	N
1487	chr9	118351010	118351011	rs7859905	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Pulse pressure	136,249 Japanese ancestry individuals	NA	9q33.1	DEC1, LOC101928775	rs7859905-?	NR	2E-8		0.02683	[0.017-0.036] unit increase	Illumina [6108953] (imputed)	N
1488	chr9	118378725	118378726	rs746368607	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-to-hip ratio adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,049 whole genome sequenced individuals, 29,518 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,001 Mylopotamos (founder/genetic isolate) individuals, 867 Pomak (founder/genetic isolate) individuals	206,045 European ancestry individuals	9q33.1	RP11-284G10.1	rs746368607-T	0.988	1E-6		0.5929	[0.35-0.83] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1488	chr9	118378725	118378726	rs746368607	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-hip ratio	1,254 whole genome sequenced European ancestry individuals, 3,071 whole genome sequenced individuals, 29,723 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,053 Mylopotamos (founder/genetic isolate) individuals, 879 Pomak (founder/genetic isolate) individuals	206,053 European ancestry individuals	9q33.1	RP11-284G10.1	rs746368607-T	0.9884	2E-7		0.6287	[0.39-0.87] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1488	chr9	118385116	118385117	rs7856039	30998689	Shadrina AS	2019-04-18	PLoS Genet	Varicose veins of lower extremities: Insights from the first large-scale genetic study.	Varicose veins	10,861 British ancestry cases, 397,594 British ancestry controls	NA	9q33.1		rs7856039-C	0.673389	3E-9		0.0022071	[0.0015-0.0029] unit increase	Affymetrix [10829469] (imputed)	N
1488	chr9	118399166	118399167	rs10982850	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	9q33.1	PAPPA	rs10982850-?	NR	8E-6	(asparagine)	1.8792149	[1.06-2.7] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1488	chr9	118401026	118401027	rs75327648	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Measles	38,219 European ancestry cases, 47,279 European ancestry controls	NA	9q33.1	NR	rs75327648-?	NR	6E-6		2.49	[1.47-3.51] unit decrease	Illumina [at least 560000] (imputed)	N
1488	chr9	118409799	118409800	rs62575331	34035401	Dube MP	2021-05-25	Sci Rep	Genetics of symptom remission in outpatients with COVID-19.	Symptoms in placebo-treated COVID-19 outpatients at risk of severe disease (time to remission)	851 European ancestry individuals	NA	9q33.1	PAPPA, DEC1	rs62575331-G	0.12	3E-8		1.57	[1.34-1.84]	Illumina [6392715] (imputed)	N
1488	chr9	118424986	118424987	rs12006166	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NA	9q33.1	intergenic	rs12006166-T	0.16	9E-7		1.08	[1.05-1.12]	Affymetrix, Illumina [~ 2300000] (imputed)	N
1488	chr9	118488614	118488615	rs72764753	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	9q33.1		rs72764753-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1489	chr9	118490314	118490315	rs12344772	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	9q33.1	AL691420.1	rs12344772-T	0.0832	2E-36		0.0435	[0.037-0.05] unit decrease	Affymetrix [18391927] (imputed)	N
1489	chr9	118490567	118490568	rs12344818	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9q33.1		rs12344818-?	NR	5E-33				NR [~ 8900000] (imputed)	N
1489	chr9	118528962	118528963	rs147549273	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9q33.1	NR	rs147549273-G	0.02091	6E-9	(AMACR)	0.04281	NR unit increase	Illumina [1671387] (imputed)	N
1489	chr9	118534499	118534500	rs10982910	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	9q33.1	PAPPA	rs10982910-T	0.9049	3E-12		0.2078	[0.15-0.27] unit decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1489	chr9	118571427	118571428	rs4979583	30823506	Hong EP	2019-02-25	J Clin Med	Genomic Variations in Susceptibility to Intracranial Aneurysm in the Korean Population.	Intracranial aneurysm	250 Korean ancestry cases, 296 Korean ancestry controls	NA	9q33.1	LINC00474	rs4979583-T	0.24	5E-9		2.45	[1.82-3.31]	Affymetrix [508192]	N
1489	chr9	118571637	118571638	rs4384055	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Abstraction and mental flexibility	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	9q33.1	intergenic	rs4384055-C	NR	5E-6		0.73854506	[0.42-1.05] unit decrease	Illumina [> 6200000] (imputed)	N
1490	chr9	118644189	118644190	rs10125137	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	9q33.1	NR	rs10125137-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
1490	chr9	118647565	118647566	rs4979590	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9q33.1		rs4979590-?	NR	1E-13				NR [~ 8900000] (imputed)	N
1490	chr9	118658715	118658716	rs10982990	24529757	Xie T	2014-01-17	Neurobiol Aging	Genome-wide association study combining pathway analysis for typical sporadic amyotrophic lateral sclerosis in Chinese Han populations.	Amyotrophic lateral sclerosis (sporadic)	250 Han Chinese ancestry cases, 250 Han Chinese ancestry controls	NA	9q33.1	C9orf27	rs10982990-?		2E-6				Illumina [859311]	N
1490	chr9	118707242	118707243	rs115391335	34124712	Sherva R	2021-02-28	Explor Med	Genome-wide association study of phenotypes measuring progression from first cocaine or opioid use to dependence reveals novel risk genes.	Opioid dependence (time to event)	1,307 African American cases, 974 African American controls	144 African American cases, 354 African American controls	9q33.1	LINC00474, LOC105376236	rs115391335-T	0.03	1E-7		1.72	[NR]	Illumina [NR] (imputed)	N
1490	chr9	118741717	118741718	rs1349323	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	9q33.1	ASTN2	rs1349323-?	NR	9E-6	(3-hydroxyphenylacetic acid)	0.28408596	[0.16-0.41] unit increase	Affymetrix [at least 2500000] (imputed)	N
1491	chr9	118756889	118756890	rs77392239	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	9q33.1	LINC00474	rs77392239-T	0.922861	3E-28		0.0382551	[0.031-0.045] unit decrease	NR [13737936] (imputed)	N
1491	chr9	118764255	118764256	rs76515679	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9q33.1		rs76515679-?	NR	3E-19				NR [~ 8900000] (imputed)	N
1491	chr9	118767408	118767409	rs79158536	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	9q33.1		rs79158536-?	NR	1E-27				NR [~ 8900000] (imputed)	N
1491	chr9	118767408	118767409	rs79158536	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	9q33.1		rs79158536-?	NR	2E-25		0.0388502	[0.031-0.047] unit decrease	Affymetrix [20259828] (imputed)	N
1491	chr9	118841008	118841009	rs2188092	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	9q33.1		rs2188092-?	NR	3E-24		0.0376423	[0.03-0.045] unit decrease	Affymetrix [20259828] (imputed)	N
1491	chr9	118841008	118841009	rs2188092	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	9q33.1	PAPPA	rs2188092-G	0.924336	3E-6	(women)	0.0401288	[0.023-0.057] unit decrease	NR [17166351] (imputed)	N
1491	chr9	118841008	118841009	rs2188092	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	9q33.1	PAPPA	rs2188092-G	0.923134	2E-10		0.0387068	[0.026-0.051] unit decrease	NR [17166351] (imputed)	N
1491	chr9	118856766	118856767	rs7468458	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	9q33.1	NR	rs7468458-?	NR	3E-7				Affymetrix [NR]	N
1492	chr9	118887551	118887552	rs204503	29860282	Scelsi MA	2018-05-30	Brain	Genetic study of multimodal imaging Alzheimer's disease progression score implicates novel loci.	Cortical amyloid beta load	936 European ancestry individuals	NA	9q33.1	Intergenic	rs204503-?		8E-6	(corrected for APOE4 status)	0.12	[NR] unit increase	Illumina [5137218] (imputed)	N
1492	chr9	118904411	118904412	rs204517	30787463	Escala-Garcia M	2019-02-21	Br J Cancer	Genome-wide association study of germline variants and breast cancer-specific mortality.	Breast cancer specific mortality in estrogen receptor positive breast cancer	4,116 European ancestry cases, 60,055 European ancestry controls	NA	9q33.1	NR	rs204517-?	NR	3E-6		0.8883291	[0.85-0.93]	Affymetrix, Illumina [~ 10400000] (imputed)	N
1492	chr9	118907039	118907040	rs204519	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 21)	19,670 European ancestry individuals	NA	9q33.1		rs204519-?	NR	2E-8				NR [9705931] (imputed)	N
1492	chr9	118921326	118921327	rs12344396	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	9q33.1	NR	rs12344396-?	NR	1E-15	(right cerebellum white matter)			NR [9227495] (imputed)	N
1492	chr9	118923441	118923442	rs10217305	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	9q33.1		rs10217305-?	NR	3E-8				NR [9705931] (imputed)	N
1492	chr9	118923651	118923652	rs10217651	31636452	Satizabal CL	2019-10-21	Nat Genet	Genetic architecture of subcortical brain structures in 38,851 individuals.	Brainstem volume	28,809 European ancestry individuals	341 South East and East Asian ancestry individuals, 85 African American individuals	9q33.1	NR	rs10217651-A	0.3906	2E-22		9.735	NR z score increase	Affymetrix, Illumina [NR] (imputed)	N
1492	chr9	118930312	118930313	rs10759832	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	9q33.1	NR	rs10759832-?	NR	6E-17	(left cerebellum white matter)			NR [9227495] (imputed)	N
1492	chr9	118930312	118930313	rs10759832	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	9q33.1	NR	rs10759832-?	NR	4E-13	(left cerebellum exterior)			NR [9227495] (imputed)	N
1492	chr9	118930312	118930313	rs10759832	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	9q33.1	NR	rs10759832-?	NR	3E-11	(right cerebellum exterior)			NR [9227495] (imputed)	N
1492	chr9	118944238	118944239	rs1160248	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	9q33.1	NR	rs1160248-?	NR	2E-8	(left ventral DC)			NR [9227495] (imputed)	N
1492	chr9	118953371	118953372	rs3789280	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9q33.1		rs3789280-?	NR	1E-14				NR [~ 8900000] (imputed)	N
1492	chr9	118953456	118953457	rs3789281	34006833	Elvsashagen T	2021-05-18	Nat Commun	The genetic architecture of the human thalamus and its overlap with ten common brain disorders.	Intralaminar thalamic nuclei volume	30,114 white British ancestry individuals			PAPPA	rs3789281-T	0.3837	1E-10		0.0547672	[0.038-0.071] unit increase	Affymetrix [8165723] (imputed)	N
1492	chr9	118954623	118954624	rs1405	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	9q33.1	NR	rs1405-?	NR	1E-16	(Brain stem)			NR [9227495] (imputed)	N
1492	chr9	118956667	118956668	rs436582	24800985	Agopian AJ	2014-05-06	PLoS One	Genome-wide association study of maternal and inherited loci for conotruncal heart defects.	Conotruncal heart defects	537 European ancestry case-parent trios, 213 case-parent trios	348 European ancestry case-parent trios, 10 case-parent trios	9q33.1	PAPPA	rs436582-?		3E-6	(EA, Inherited)	2.64	[1.73-4.03]	Illumina [2421290] (imputed)	N
1492	chr9	118964954	118964955	rs1003858	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	9q33.1	NR	rs1003858-?	NR	2E-7	(AA)	1.5177	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1492	chr9	118970562	118970563	rs62574179	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	9q33.1	NR	rs62574179-?	NR	8E-11	(right ventral DC)			NR [9227495] (imputed)	N
1492	chr9	118970562	118970563	rs62574179	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	9q33.1	NR	rs62574179-?	NR	5E-10	(left ventral DC)			NR [9227495] (imputed)	N
1492	chr9	118970562	118970563	rs62574179	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	9q33.1	NR	rs62574179-?	NR	2E-10	(Brain stem)			NR [9227495] (imputed)	N
1492	chr9	118989554	118989555	rs62574201	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	9q33.1	NR	rs62574201-?	NR	7E-11	(Brain stem)			NR [9227495] (imputed)	N
1492	chr9	118989554	118989555	rs62574201	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	9q33.1	NR	rs62574201-?	NR	2E-8	(left ventral DC)			NR [9227495] (imputed)	N
1492	chr9	118993354	118993354	rs149033263	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	9q33.1	NR	rs149033263-?	NR	7E-10	(left cerebellum white matter)			NR [9227495] (imputed)	N
1492	chr9	118993354	118993354	rs149033263	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	9q33.1	NR	rs149033263-?	NR	2E-9	(right cerebellum white matter)			NR [9227495] (imputed)	N
1492	chr9	118993354	118993354	rs149033263	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	9q33.1	NR	rs149033263-?	NR	2E-10	(Brain stem)			NR [9227495] (imputed)	N
1492	chr9	118997771	118997772	rs1377248330	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Height	458,235 European ancestry individuals	NA	9q33.1		rs1377248330-?	NR	4E-10		0.690101	[0.48-0.9] unit decrease	NR [9800000] (imputed)	N
1493	chr9	119046002	119046003	rs118033375	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9q33.1	NR	rs118033375-A	0.01916	7E-9	(RHOC)	0.0103	NR unit increase	Illumina [1671387] (imputed)	N
1493	chr9	119046002	119046003	rs118033375	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9q33.1	NR	rs118033375-A	0.01916	4E-10	(RBP1)	0.05123	NR unit increase	Illumina [1671387] (imputed)	N
1493	chr9	119046002	119046003	rs118033375	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9q33.1	NR	rs118033375-A	0.01916	3E-9	(CAPN2)	0.04103	NR unit increase	Illumina [1671387] (imputed)	N
1493	chr9	119046002	119046003	rs118033375	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9q33.1	NR	rs118033375-A	0.01916	2E-8	(TAGLN)	0.2755	NR unit increase	Illumina [1671387] (imputed)	N
1493	chr9	119046002	119046003	rs118033375	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9q33.1	NR	rs118033375-A	0.01916	1E-8	(ACSS3)	0.1493	NR unit increase	Illumina [1671387] (imputed)	N
1493	chr9	119046002	119046003	rs118033375	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9q33.1	NR	rs118033375-A	0.01916	1E-10	(LUM)	0.2226	NR unit increase	Illumina [1671387] (imputed)	N
1493	chr9	119049957	119049958	rs10817870	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	9q33.1	NR	rs10817870-?	NR	7E-15	(left cerebellum exterior)			NR [9227495] (imputed)	N
1493	chr9	119049957	119049958	rs10817870	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	9q33.1	NR	rs10817870-?	NR	1E-13	(right cerebellum exterior)			NR [9227495] (imputed)	N
1493	chr9	119053274	119053275	rs1570516	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	9q33.1	NR	rs1570516-T	0.766289	2E-8		0.00705705	[0.0044-0.0097] unit increase	Affymetrix [16582621] (imputed)	N
1493	chr9	119057740	119057741	rs148004436	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	9q33.1	NR	rs148004436-?	NR	2E-9	(right cerebellum white matter)			NR [9227495] (imputed)	N
1493	chr9	119057740	119057741	rs148004436	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	9q33.1	NR	rs148004436-?	NR	2E-8	(left cerebellum white matter)			NR [9227495] (imputed)	N
1493	chr9	119057740	119057741	rs148004436	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	9q33.1	NR	rs148004436-?	NR	2E-22	(left cerebellum exterior)			NR [9227495] (imputed)	N
1493	chr9	119057740	119057741	rs148004436	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	9q33.1	NR	rs148004436-?	NR	2E-21	(right cerebellum exterior)			NR [9227495] (imputed)	N
1493	chr9	119061395	119061396	rs72754248	35079123	Chambers T	2022-01-25	Mol Psychiatry	Genetic common variants associated with cerebellar volume and their overlap with mental disorders: a study on 33,265 individuals from the UK-Biobank.	Total cerebellar volume (excluding Crus I vermis)	33,265 European ancestry individuals	NA	9q33.1		rs72754248-A	NR	1E-35		0.0683	[0.058-0.079] unit increase	Affymetrix [6193476] (imputed)	N
1493	chr9	119061395	119061396	rs72754248	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (min-P)	26,502 European ancestry individuals	NA	9q33.1	PKDCC	rs72754248-?		7E-27				NR [7428630] (imputed)	N
1493	chr9	119061395	119061396	rs72754248	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	9q33.1	NR	rs72754248-?		3E-46				NR [7428630] (imputed)	N
1493	chr9	119061395	119061396	rs72754248	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (min-P)	26,502 European ancestry individuals	NA	9q33.1	CALCRL, TFPI	rs72754248-?		9E-27				NR [7428630] (imputed)	N
1493	chr9	119061395	119061396	rs72754248	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	9q33.1	PAPPA, ASTN2	rs72754248-?		3E-34				NR [7428630] (imputed)	N
1493	chr9	119061395	119061396	rs72754248	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	9q33.1	NR	rs72754248-?	NR	7E-41	(right cerebellum exterior)			NR [9227495] (imputed)	N
1493	chr9	119061395	119061396	rs72754248	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	9q33.1	NR	rs72754248-?	NR	3E-15	(right cerebellum white matter)			NR [9227495] (imputed)	N
1493	chr9	119061395	119061396	rs72754248	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	9q33.1	NR	rs72754248-?	NR	3E-14	(left cerebellum white matter)			NR [9227495] (imputed)	N
1493	chr9	119061395	119061396	rs72754248	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	9q33.1	NR	rs72754248-?	NR	1E-42	(left cerebellum exterior)			NR [9227495] (imputed)	N
1493	chr9	119066202	119066203	rs17372936	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Pappalysin-1 levels	21,758 European ancestry individuals	9,173 individuals	9q33.1		rs17372936-T	0.78	2E-16		0.0945	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1493	chr9	119066202	119066203	rs17372936	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	9q33.1	NR	rs17372936-T	0.767669	4E-18		0.00775694	[0.0058-0.0097] unit increase	Affymetrix [16582909] (imputed)	N
1493	chr9	119066202	119066203	rs17372936	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	9q33.1	NR	rs17372936-T	0.767669	5E-12		0.00714445	[0.005-0.0093] unit increase	Affymetrix [16582965] (imputed)	N
1493	chr9	119078355	119078356	rs1885983	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	9q33.1	NR	rs1885983-?	NR	4E-8	(left cerebellum exterior)			NR [9227495] (imputed)	N
1493	chr9	119080513	119080514	rs7872785	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9q33.1	NR	rs7872785-C	0.01916	9E-13	(PEA15)	0.007802	NR unit increase	Illumina [1671387] (imputed)	N
1493	chr9	119080513	119080514	rs7872785	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9q33.1	NR	rs7872785-C	0.01916	6E-9	(SERPINF1)	0.01824	NR unit increase	Illumina [1671387] (imputed)	N
1493	chr9	119080513	119080514	rs7872785	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9q33.1	NR	rs7872785-C	0.01916	4E-11	(RBP1)	0.05447	NR unit increase	Illumina [1671387] (imputed)	N
1493	chr9	119080513	119080514	rs7872785	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9q33.1	NR	rs7872785-C	0.01916	2E-9	(FHL1)	0.005875	NR unit increase	Illumina [1671387] (imputed)	N
1493	chr9	119080513	119080514	rs7872785	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9q33.1	NR	rs7872785-C	0.01916	2E-12	(TAGLN)	0.3468	NR unit increase	Illumina [1671387] (imputed)	N
1493	chr9	119080513	119080514	rs7872785	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9q33.1	NR	rs7872785-C	0.01916	2E-11	(LUM)	0.234	NR unit increase	Illumina [1671387] (imputed)	N
1493	chr9	119080513	119080514	rs7872785	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9q33.1	NR	rs7872785-C	0.01916	1E-8	(SH3BGRL)	0.01464	NR unit increase	Illumina [1671387] (imputed)	N
1493	chr9	119080513	119080514	rs7872785	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9q33.1	NR	rs7872785-C	0.01916	1E-8	(DCN)	0.04288	NR unit increase	Illumina [1671387] (imputed)	N
1493	chr9	119083370	119083371	rs112332688	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	9q33.1	NR	rs112332688-A	0.767684	1E-8		0.00783581	[0.005-0.0107] unit increase	Affymetrix [16585854] (imputed)	N
1493	chr9	119083370	119083371	rs112332688	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	9q33.1	NR	rs112332688-A	0.767684	6E-7		0.00809012	[0.0048-0.0114] unit increase	Affymetrix [16585866] (imputed)	N
1493	chr9	119098518	119098518	rs147269950	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	9q33.1	NR	rs147269950-?	NR	2E-15	(X4th ventricle)			NR [9227495] (imputed)	N
1493	chr9	119099872	119099873	rs13294988	28232668	Yu Y	2017-02-24	Nat Commun	Genome-wide analyses of non-syndromic cleft lip with palate identify 14 novel loci and genetic heterogeneity.	Nonsyndromic cleft lip with cleft palate	2,033 Han Chinese ancestry cases, 4,051 Han Chinese ancestry controls	1,346 Han Chinese ancestry cases, 4,542 Han Chinese ancestry controls	9q33.1	NR	rs13294988-G	0.43	7E-6		1.14		Illumina [803202]	N
1493	chr9	119107707	119107708	rs912213	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	9q33.1	NR	rs912213-C	0.703167	2E-10		0.013219	[0.0091-0.0173] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1493	chr9	119115530	119115531	rs1323438	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	9q33.1	PAPPA	rs1323438-C	0.71832	6E-11		0.018955	[0.013-0.025] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1493	chr9	119122341	119122342	rs751543	31097437	Plotnikov D	2019-05-16	Br J Ophthalmol	Association between birth weight and refractive error in adulthood: a Mendelian randomisation study.	Birth weight	188,039 European ancestry individuals	NA	9q33.1	NR	rs751543-T	0.29	3E-9		0.021	[0.013-0.029] z score increase	Affymetrix [up to 10400000] (imputed)	N
1493	chr9	119122341	119122342	rs751543	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	9q33.1	PAPPA	rs751543-T	0.72	7E-10		0.026	[NR] unit increase	Affymetrix, Illumina [2834208] (imputed)	N
1493	chr9	119122720	119122721	rs12347137	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9q33.1		rs12347137-?	NR	5E-100				NR [~ 8900000] (imputed)	N
1493	chr9	119124535	119124535	rs555464135	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	9q33.1	PAPPA	rs555464135-T	0.7984	1E-84		0.0462	[0.041-0.051] unit increase	Affymetrix [18391927] (imputed)	N
1493	chr9	119124535	119124535	rs555464135	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	9q33.1	NR	rs555464135-TAA	0.201883	4E-13		0.0621854	[0.046-0.079] unit decrease	Affymetrix [17914406] (imputed)	N
1493	chr9	119125448	119125449	rs10817872	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	9q33.1	NR	rs10817872-?	NR	2E-9	(right cerebellum exterior)			NR [9227495] (imputed)	N
1493	chr9	119125448	119125449	rs10817872	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	9q33.1	NR	rs10817872-?	NR	2E-9	(left cerebellum exterior)			NR [9227495] (imputed)	N
1493	chr9	119126100	119126101	rs7027103	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	9q33.1	NR	rs7027103-?	NR	7E-26		0.28787	[0.23-0.34] unit decrease	Affymetrix [7794483] (imputed)	N
1493	chr9	119126100	119126101	rs7027103	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	9q33.1	NR	rs7027103-?	NR	7E-16	(male)	0.34981	[0.26-0.43] unit decrease	Affymetrix [7794483] (imputed)	N
1493	chr9	119126100	119126101	rs7027103	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	9q33.1	NR	rs7027103-?	NR	1E-12	(female)	0.21183	[0.15-0.27] unit decrease	Affymetrix [7794483] (imputed)	N
1493	chr9	119129256	119129257	rs7033487	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	9q33.1		rs7033487-C	NR	2E-48		0.0302	[0.026-0.034] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1493	chr9	119129256	119129257	rs7033487	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	9q33.1	PAPPA	rs7033487-T	0.8102	8E-10		0.0529	[0.036-0.07] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1493	chr9	119129690	119129691	rs7020944	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	9q33.1		rs7020944-A	NR	3E-15		0.0208	[0.016-0.026] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1493	chr9	119134795	119134796	rs7869550	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	9q33.1	PAPPA	rs7869550-G	NR	8E-10		0.0234953	[0.016-0.031] unit decrease	Affymetrix [323123] (imputed)	N
1493	chr9	119134795	119134796	rs7869550	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	9q33.1	NR	rs7869550-?	NR	2E-8		0.05916982	[0.039-0.08] unit decrease	Illumina [34656550] (imputed)	N
1493	chr9	119134795	119134796	rs7869550	18391950	Lettre G	2008-04-06	Nat Genet	Identification of ten loci associated with height highlights new biological pathways in human growth.	Height	15,821 European ancestry individuals	Up to 17,801 European ancestry individuals	9q33.1	PAPPA	rs7869550-G	0.24	1E-6		0.33	[0.45-0.82] cm decrease	Affymetrix, Illumina [2260683] (imputed)	N
1494	chr9	119154270	119154271	rs115535131	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	9q33.1	PAPPA	rs115535131-C	0.0118	2E-9		0.0532	[0.036-0.07] unit decrease	Affymetrix [18391927] (imputed)	N
1494	chr9	119167219	119167220	rs1858015	33888516	Zheng T	2021-04-22	Gut	Genome-wide analysis of 944 133 individuals provides insights into the etiology of haemorrhoidal disease.	Haemorrhoidal disease	218,920 European ancestry cases, 725,213 European ancestry controls	NA	9q33.1	PAPPA	rs1858015-?	0.32289999999999996	6E-11		0.97	[0.96-0.98]	Affymetrix, Illumina [8494288] (imputed)	N
1494	chr9	119172149	119172149	rs35019477	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-1-receptor antagonist levels	3,638 Finnish ancestry individuals	NA	9q33.1	NR	rs35019477-GCA		7E-7		0.1328	[0.08-0.185] SD units decrease	NR [10700000] (imputed)	N
1494	chr9	119181793	119181794	rs17303101	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NA	9q33.1	intergenic	rs17303101-A	0.28	4E-7		1.07	[1.04-1.10]	Affymetrix, Illumina [~ 2300000] (imputed)	N
1494	chr9	119184087	119184088	rs66818288	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	9q33.1	ASTN2	rs66818288-G	NR	8E-9		0.0271474	[0.018-0.036] unit increase	Affymetrix [321016] (imputed)	N
1494	chr9	119190532	119190533	rs10817888	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	9q33.1	ASTN2	rs10817888-?	NR	1E-12		0.022203118	[0.016-0.028] unit decrease	Illumina [27896057] (imputed)	N
1494	chr9	119232508	119232509	rs10817895	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	9q33.1		rs10817895-?	NR	8E-14		0.0173765	[0.013-0.022] unit decrease	Affymetrix [20259828] (imputed)	N
1494	chr9	119232654	119232655	rs10817896	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	9q33.1	ASTN2	rs10817896-C	0.730025	3E-13		0.0152751	[0.011-0.019] unit decrease	NR [13737936] (imputed)	N
1494	chr9	119232654	119232655	rs10817896	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	9q33.1		rs10817896-?	NR	6E-15				NR [~ 8900000] (imputed)	N
1494	chr9	119234057	119234058	rs10983184	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	9q33.1	NR	rs10983184-?	NR	5E-8	(left hippocampus)			NR [9227495] (imputed)	N
1494	chr9	119234057	119234058	rs10983184	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	9q33.1	ASTN2	rs10983184-T	0.6404	8E-23		0.0259	[0.021-0.031] unit increase	Affymetrix [19819130] (imputed)	N
1494	chr9	119234057	119234058	rs10983184	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	9q33.1	ASTN2	rs10983184-T	0.6404	9E-28		0.0273	[0.022-0.032] unit increase	Affymetrix [19819130] (imputed)	N
1494	chr9	119234057	119234058	rs10983184	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	9q33.1	ASTN2	rs10983184-T	0.6404	5E-14		0.0185	[0.014-0.023] unit increase	Affymetrix [19819130] (imputed)	N
1494	chr9	119234057	119234058	rs10983184	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	9q33.1		rs10983184-?	NR	5E-35				NR [~ 8900000] (imputed)	N
1494	chr9	119243633	119243634	rs1040851	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Spinal canal stenosis	9,660 European ancestry cases, 445,127 European ancestry controls, 661 East Asian ancestry cases, 178,065 East Asian ancestry controls	NA	9q33.1		rs1040851-A	NR	1E-8		0.0854	[0.056-0.115] unit decrease	Affymetrix, Illumina [25840105] (imputed)	N
1494	chr9	119243633	119243634	rs1040851	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	9q33.1	NR	rs1040851-?	NR	3E-10	(right hippocampus)			NR [9227495] (imputed)	N
1494	chr9	119243633	119243634	rs1040851	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	9q33.1	NR	rs1040851-?	NR	2E-15	(left hippocampus)			NR [9227495] (imputed)	N
1494	chr9	119245126	119245127	rs7873551	30279459	van der Meer D	2018-10-02	Mol Psychiatry	Brain scans from 21,297 individuals reveal the genetic architecture of hippocampal subfield volumes.	Total hippocampal volume	21,297 European ancestry individuals	NA	9q33.1	ASTN2	rs7873551-C	NR	4E-11		42.42	NR mm3 decrease	Affymetrix, Illumina [NR] (imputed)	N
1494	chr9	119245182	119245183	rs7030607	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	9q33.1		rs7030607-A	0.34	4E-63		16.77	z score increase	Affymetrix [9061022] (imputed)	N
1494	chr9	119245182	119245183	rs7030607	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	9q33.1		rs7030607-A	0.34	3E-19		8.98	z score increase	Affymetrix [9061022] (imputed)	N
1494	chr9	119245182	119245183	rs7030607	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	9q33.1		rs7030607-A	0.34	9E-38		12.85	z score increase	Affymetrix [9061022] (imputed)	N
1494	chr9	119245182	119245183	rs7030607	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	9q33.1	NR	rs7030607-A	0.3593	2E-16				NR [9056863] (imputed)	N
1494	chr9	119245182	119245183	rs7030607	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	9q33.1	NR	rs7030607-A	0.3593	1E-17				NR [9056863] (imputed)	N
1494	chr9	119245182	119245183	rs7030607	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	9q33.1	NR	rs7030607-?	NR	5E-15	(right hippocampus)			NR [9227495] (imputed)	N
1494	chr9	119245182	119245183	rs7030607	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	9q33.1	NR	rs7030607-?	NR	1E-19	(left hippocampus)			NR [9227495] (imputed)	N
1494	chr9	119245182	119245183	rs7030607	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Migraine	53,109 European ancestry cases, 230,876 European ancestry controls	NA	9q33.1	ASTN2	rs7030607-?	NR	2E-8		1.046	[1.029-1.062]	Illumina [13763073] (imputed)	N
1494	chr9	119246424	119246425	rs4836726	30279459	van der Meer D	2018-10-02	Mol Psychiatry	Brain scans from 21,297 individuals reveal the genetic architecture of hippocampal subfield volumes.	Subiculum volume	21,297 European ancestry individuals	NA	9q33.1	ASTN2	rs4836726-G	NR	3E-11		5.65	NR mm3 increase	Affymetrix, Illumina [NR] (imputed)	N
1494	chr9	119247973	119247974	rs7020341	30818988	Klein M	2019-03-01	Am J Psychiatry	Genetic Markers of ADHD-Related Variations in Intracranial Volume.	Hippocampal volume	24,704 European ancestry individuals	NA	9q33.1	NR	rs7020341-C	NR	2E-11		6.704	NR z score increase	NR [9145464] (imputed)	N
1494	chr9	119248058	119248059	rs17220352	35079123	Chambers T	2022-01-25	Mol Psychiatry	Genetic common variants associated with cerebellar volume and their overlap with mental disorders: a study on 33,265 individuals from the UK-Biobank.	Total cerebellar volume (excluding Crus I vermis)	33,265 European ancestry individuals	NA	9q33.1		rs17220352-A	NR	3E-13		0.0401	[0.029-0.051] unit increase	Affymetrix [6193476] (imputed)	N
1494	chr9	119248058	119248059	rs17220352	29397368	Meng W	2018-01-31	EBioMedicine	A Genome-Wide Association Study Finds Genetic Associations with Broadly-Defined Headache in UK Biobank (N=223,773).	Headache	74,461 British ancestry cases, 149,321 British ancestry controls	NA	9q33.1	ASTN2	rs17220352-G	NR	9E-11		0.0104	[0.0073-0.0135] unit increase	Affymetrix [9304965] (imputed)	N
1494	chr9	119249325	119249326	rs10759844	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antimigraine preparations)	5,521 European ancestry cases, 114,323 European ancestry controls, 387 East Asian ancestry cases, 178,339 East Asian ancestry controls	NA	9q33.1		rs10759844-A	NR	8E-12		0.1326	[0.095-0.171] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1494	chr9	119249338	119249339	rs7852872	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (antimigraine preparations)	5,521 European ancestry cases, 114,323 European ancestry controls	NA	9q33.1	ASTN2	rs7852872-G	0.365622	1E-12		0.14273809	[0.1-0.18] unit decrease	Affymetrix [7288503] (imputed)	N
1494	chr9	119249338	119249339	rs7852872	22504421	Bis JC	2012-04-15	Nat Genet	Common variants at 12q14 and 12q24 are associated with hippocampal volume.	Hippocampal volume	9,232 European ancestry individuals	2,318 European ancestry individuals	9q33.1	ASTN2	rs7852872-C	0.62	1E-7		47.7	[30.06-65.34] mm3 decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1494	chr9	119252276	119252277	rs1885234	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	9q33.1	NR	rs1885234-G	0.3946	3E-10		0.0244	[0.017-0.032] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1494	chr9	119252628	119252629	rs6478241	33830993	Johnston KJA	2021-04-08	PLoS Genet	Sex-stratified genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	387,649 British ancestry individuals	NA	9q33.1	ASTN2	rs6478241-?	NR	7E-9			[NR]	NR [NR] (imputed)	N
1494	chr9	119252628	119252629	rs6478241	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	9q33.1		rs6478241-?	NR	5E-16				NR [9705931] (imputed)	N
1494	chr9	119252628	119252629	rs6478241	31194737	Johnston KJA	2019-06-13	PLoS Genet	Genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	387,649 British ancestry individuals	NA	9q33.1	ASTN2	rs6478241-A	0.365	3E-9		0.0149	[0.01-0.0198] unit increase	NR [NR]	N
1494	chr9	119252628	119252629	rs6478241	30279459	van der Meer D	2018-10-02	Mol Psychiatry	Brain scans from 21,297 individuals reveal the genetic architecture of hippocampal subfield volumes.	Hippocampal subfield CA4 volume	21,297 European ancestry individuals	NA	9q33.1	ASTN2	rs6478241-A	NR	4E-10		3.18	NR mm3 decrease	Affymetrix, Illumina [NR] (imputed)	N
1494	chr9	119252628	119252629	rs6478241	30279459	van der Meer D	2018-10-02	Mol Psychiatry	Brain scans from 21,297 individuals reveal the genetic architecture of hippocampal subfield volumes.	Dentate gyrus granule cell layer volume	21,297 European ancestry individuals	NA	9q33.1	ASTN2	rs6478241-A	NR	1E-10		3.8	NR mm3 decrease	Affymetrix, Illumina [NR] (imputed)	N
1494	chr9	119252628	119252629	rs6478241	27322543	Gormley P	2016-06-20	Nat Genet	Meta-analysis of 375,000 individuals identifies 38 susceptibility loci for migraine.	Migraine without aura	8,348 European ancestry cases, 139,622 European ancestry controls	NA	9q33.1	ASTN2	rs6478241-A	0.35	1E-10		1.14	[1.09-1.18]	Affymetrix, Illumina, Perlegen [8094889] (imputed)	N
1494	chr9	119252628	119252629	rs6478241	27322543	Gormley P	2016-06-20	Nat Genet	Meta-analysis of 375,000 individuals identifies 38 susceptibility loci for migraine.	Migraine	59,674 European ancestry cases, 316,078 European ancestry controls	NA	9q33.1	ASTN2	rs6478241-A	0.36	1E-12		1.05	[1.04-1.07]	Affymetrix, Illumina, Perlegen [8094889] (imputed)	N
1494	chr9	119252628	119252629	rs6478241	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine without aura	7,107 European ancestry cases, 69,427 European ancestry controls	NA	9q33.1	ASTN2	rs6478241-A	0.38	1E-7		1.12	[1.08-1.18]	Affymetrix, Illumina [~ 2300000] (imputed)	N
1494	chr9	119252628	119252629	rs6478241	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine - clinic-based	5,175 European ancestry clinic-based cases, 13,972 European ancestry clinic-based controls	NA	9q33.1	ASTN2	rs6478241-A	0.38	1E-9		1.16	[1.11-1.22]	Affymetrix, Illumina [~ 2300000] (imputed)	N
1494	chr9	119252628	119252629	rs6478241	22683712	Freilinger T	2012-06-10	Nat Genet	Genome-wide association analysis identifies susceptibility loci for migraine without aura.	Migraine	2,326 European ancestry cases, 4,580 European ancestry controls	2,508 European ancestry cases, 2,652 European ancestry controls	9q33.1	ASTN2	rs6478241-A	0.38	4E-8		1.16	[1.10-1.23]	Illumina [1246388] (imputed)	N
1494	chr9	119254724	119254725	rs10817898	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	9q33.1		rs10817898-?	NR	6E-8				NR [~ 8900000] (imputed)	N
1494	chr9	119255296	119255297	rs34979631	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	9q33.1	NR	rs34979631-?	NR	3E-9	(right hippocampus)			NR [9227495] (imputed)	N
1494	chr9	119255296	119255297	rs34979631	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	9q33.1	NR	rs34979631-?	NR	2E-12	(left hippocampus)			NR [9227495] (imputed)	N
1494	chr9	119258582	119258583	rs3891689	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	9q33.1		rs3891689-C	NR	4E-8		0.014	[0.0091-0.0189] unit increase	Affymetrix, Illumina [20535842] (imputed)	N
1494	chr9	119258819	119258820	rs4837565	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	9q33.1	NR	rs4837565-?	NR	9E-12	(right hippocampus)			NR [9227495] (imputed)	N
1494	chr9	119258819	119258820	rs4837565	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	9q33.1	NR	rs4837565-?	NR	8E-13	(left hippocampus)			NR [9227495] (imputed)	N
1494	chr9	119260625	119260626	rs7850364	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9q33.1		rs7850364-?	NR	4E-19				NR [~ 8900000] (imputed)	N
1494	chr9	119264096	119264097	rs11792948	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	9q33.1	NR	rs11792948-?	NR	3E-12	(left hippocampus)			NR [9227495] (imputed)	N
1494	chr9	119264096	119264097	rs11792948	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	9q33.1	NR	rs11792948-?	NR	2E-8	(right hippocampus)			NR [9227495] (imputed)	N
1494	chr9	119264107	119264108	rs13298297	28452372	Gorski M	2017-04-28	Sci Rep	1000 Genomes-based meta-analysis identifies 10 novel loci for kidney function.	Glomerular filtration rate (creatinine)	110,517 European ancestry individuals		9q33.1	ASTN2	rs13298297-A	0.2	2E-8		0.0075	[0.0048-0.0102] unit decrease	Affymetrix, Illumina [up to 10971307] (imputed)	N
1494	chr9	119264420	119264420	rs35212715	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	9q33.1	ASTN2	rs35212715-ATGTG	NR	2E-8		0.0178029	[0.012-0.024] unit decrease	Affymetrix [323123] (imputed)	N
1494	chr9	119265054	119265054	rs143186321	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	9q33.1	ASTN2	rs143186321-G	NR	4E-8		0.0202693	[0.013-0.027] unit increase	Affymetrix [323123] (imputed)	N
1494	chr9	119266694	119266695	rs4836732	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	9q33.1	ASTN2	rs4836732-T	0.5325	3E-16		0.0025	[0.0019-0.0031] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
1494	chr9	119266694	119266695	rs4836732	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Osteoarthritis (hip)	15,704 European ancestry cases, 378,169 European ancestry controls	NA	9q33.1	ASTN2	rs4836732-C	0.47	4E-11		1.0804741	[1.055978685-1.105537896]	Affymetrix, Illumina [up to 17000000] (imputed)	N
1494	chr9	119266694	119266695	rs4836732	30374069	Styrkarsdottir U	2018-10-29	Nat Genet	Meta-analysis of Icelandic and UK data sets identifies missense variants in SMO, IL11, COL11A1 and 13 more new loci associated with osteoarthritis.	Osteoarthritis (hip)	17,151 European ancestry cases, 596,639 European ancestry controls	NA	9q33.1	NR	rs4836732-C	0.47	4E-12		1.086744	[NR]	Affymetrix, Illumina [11554240] (imputed)	N
1494	chr9	119273818	119273819	rs4837580	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	9q33.1	NR	rs4837580-?	NR	2E-10	(right hippocampus)			NR [9227495] (imputed)	N
1494	chr9	119275366	119275367	rs10983204	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	9q33.1	NR	rs10983204-?	NR	1E-13	(left hippocampus)			NR [9227495] (imputed)	N
1495	chr9	119283413	119283413	rs139925085	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	9q33.1	ASTN2, RP11-264C15.2	rs139925085-CACAGA	NR	2E-8		0.0223668	[0.015-0.03] unit decrease	Affymetrix [321016] (imputed)	N
1495	chr9	119296735	119296736	rs13294352	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	9q33.1	ASTN2, RP11-264C15.2	rs13294352-T	NR	4E-11		0.0211594	[0.015-0.027] unit increase	Affymetrix [323123] (imputed)	N
1495	chr9	119301606	119301607	rs13283416	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	9q33.1	ASTN2, RP11-264C15.2	rs13283416-G	NR	2E-8		0.0160305	[0.01-0.022] unit decrease	Affymetrix [319769] (imputed)	N
1495	chr9	119301606	119301607	rs13283416	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	9q33.1	TRIM32	rs13283416-G	0.4961	4E-12		6.931	NR z score decrease	Illumina [26237160] (imputed)	N
1495	chr9	119301606	119301607	rs13283416	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	9q33.1	ASTN2	rs13283416-G	0.498	3E-9		0.232	[0.05-0.414] ml/min/1.73m2 decrease	Affymetrix, Illumina [at least 5248638] (imputed)	N
1495	chr9	119301606	119301607	rs13283416	30374069	Styrkarsdottir U	2018-10-29	Nat Genet	Meta-analysis of Icelandic and UK data sets identifies missense variants in SMO, IL11, COL11A1 and 13 more new loci associated with osteoarthritis.	Osteoarthritis (hip)	17,151 European ancestry cases, 596,639 European ancestry controls	NA	9q33.1	ASTN2	rs13283416-G	NR	5E-14	(additive)	1.1	[1.07-1.12]	Affymetrix, Illumina [11554240] (imputed)	N
1495	chr9	119309524	119309525	rs4837613	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	9q33.1		rs4837613-C	NR	1E-16		0.0136	[0.01-0.017] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
1495	chr9	119309524	119309525	rs4837613	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	9q33.1	ASTN2, RP11-264C15.2	rs4837613-C	NR	5E-12		0.0195375	[0.014-0.025] unit decrease	Affymetrix [321016] (imputed)	N
1495	chr9	119309524	119309525	rs4837613	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	9q33.1	ASTN2, RP11-264C15.2	rs4837613-C	NR	3E-13		0.0225429	[0.017-0.029] unit decrease	Affymetrix [323123] (imputed)	N
1495	chr9	119309524	119309525	rs4837613	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	9q33.1	ASTN2	rs4837613-C	0.4887	3E-29		0.0213	[0.018-0.025] unit decrease	Affymetrix [18391927] (imputed)	N
1495	chr9	119309524	119309525	rs4837613	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	9q33.1	NR	rs4837613-C	0.48956	1E-8		0.0547297	[0.036-0.074] unit decrease	Affymetrix [21375087] (imputed)	N
1495	chr9	119309524	119309525	rs4837613	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	9q33.1	NR	rs4837613-C	0.488069	1E-8		0.0375375	[0.024-0.051] unit decrease	Affymetrix [17914406] (imputed)	N
1495	chr9	119312255	119312256	rs1861881	32632093	Guo Y	2020-07-06	Nat Commun	A genome-wide cross-phenotype meta-analysis of the association of blood pressure with migraine.	Migraine and/or diastolic blood pressure	757,601 European ancestry individuals with blood pressure measurements, 59,674 European ancestry migraine cases, 316,078 European ancestry controls	NA	9q33.1	NR	rs1861881-?	NR	2E-13				NR [up to 7000000]	N
1495	chr9	119312255	119312256	rs1861881	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	NA	9q33.1	RP11-264C15.2	rs1861881-G	0.6840999999999999	7E-10		0.115	[0.079-0.151] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1495	chr9	119313075	119313076	rs55957960	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	9q33.1	ASTN2, RP11-264C15.2	rs55957960-A	NR	1E-8		0.0189789	[0.012-0.026] unit decrease	Affymetrix [319769] (imputed)	N
1495	chr9	119313075	119313076	rs55957960	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	9q33.1	ASTN2, RP11-264C15.2	rs55957960-A	NR	2E-8		0.0187053	[0.012-0.025] unit decrease	Affymetrix [319769] (imputed)	N
1495	chr9	119313485	119313486	rs1895062	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	9q33.1		rs1895062-A	NR	1E-13		1.04	[1.03-1.06]	Affymetrix, Illumina [NR] (imputed)	N
1495	chr9	119313485	119313486	rs1895062	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	9q33.1	ASTN2	rs1895062-A	0.59	1E-14	(EA)	1.0638298	[1.05-1.09] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
1495	chr9	119314216	119314217	rs13290997	23284291	Hancock DB	2012-12-20	PLoS Genet	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (smoking interaction)	50,047 European ancestry individuals	NA	9q33.1	ASTN2	rs13290997-A	NR	5E-7	(FEV1, Pack-years)			NR [~ 2500000] (imputed)	N
1495	chr9	119314850	119314851	rs1407243	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	9q33.1	ASTN2	rs1407243-C	0.6	9E-9		0.37	[0.25-0.49] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1495	chr9	119314850	119314851	rs1407243	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	9q33.1	ASTN2	rs1407243-C	0.5985	6E-7		0.3364	[0.2-0.47] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1495	chr9	119324928	119324929	rs1321917	34450027	Boer CG	2021-08-24	Cell	Deciphering osteoarthritis genetics across 826,690 individuals from 9 populations.	Osteoarthritis (with total hip replacement)	23,021 European ancestry cases, 296,016 European ancestry controls	NA	9q33.1		rs1321917-C	0.4088	1E-18		1.1029627	[1.079226304-1.127221325]	Affymetrix, Illumina [NR] (imputed)	N
1495	chr9	119324928	119324929	rs1321917	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Breast cancer	17,881 European ancestry cases, 410,350 European ancestry controls	NA	9q33.1		rs1321917-G	NR	2E-7		1.0604	NR	Affymetrix [7846216] (imputed)	N
1495	chr9	119324928	119324929	rs1321917	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	9q33.1	ASTN2	rs1321917-C	0.4364	1E-18		0.0023	[0.0017-0.0029] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
1495	chr9	119333682	119333683	rs10983238	18839057	Lesch KP	2008-10-07	J Neural Transm (Vienna)	Molecular genetics of adult ADHD: converging evidence from genome-wide association and extended pedigree linkage studies.	Attention deficit hyperactivity disorder	343 European ancestry cases, 250 European ancestry controls, 54 controls	NA	9q33.1	ASTN2	rs10983238-?	NR	1E-7				Affymetrix [504219]	N
1495	chr9	119351428	119351429	rs17292540	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	9q33.1	NR	rs17292540-C	0.2239	6E-8		0.0115	[0.0074-0.0156] unit decrease	NR [~ 27400000] (imputed)	N
1495	chr9	119359372	119359372	rs34886460	26635082	Soler Artigas M	2015-12-04	Nat Commun	Sixteen new lung function signals identified through 1000 Genomes Project reference panel imputation.	Lung function (FEV1/FVC)	38,199 European ancestry adults	54,550 European ancestry adults, 5,062 children	9q33.1	ASTN2	rs34886460-T	NR	5E-11	(adults)	0.031	[0.021-0.041] unit increase	Affymetrix, Illumina [8694268] (imputed)	N
1495	chr9	119368244	119368245	rs6478246	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	9q33.1		rs6478246-A	0.5364	1E-8		0.1279139	[0.084-0.172] mmHg increase	Affymetrix, Illumina [242865] (imputed)	N
1495	chr9	119368244	119368245	rs6478246	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	9q33.1		rs6478246-A	0.5363	1E-9		0.08475578	[0.058-0.112] mmHg increase	Affymetrix, Illumina [242866] (imputed)	N
1495	chr9	119370678	119370679	rs2416564	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9q33.1		rs2416564-?	NR	3E-37				NR [~ 8900000] (imputed)	N
1495	chr9	119374882	119374883	rs7871810	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	9q33.1	ASTN2	rs7871810-T	NR	1E-9		0.0176677	[0.012-0.023] unit increase	Affymetrix [321016] (imputed)	N
1495	chr9	119383319	119383320	rs12340737	29781551	Guo X	2018-05-21	Genet Epidemiol	A univariate perspective of multivariate genome-wide association analysis.	Axial length or spherical error (univariate decomposition analysis)	1,055 individuals	NA	9q33.1	NR	rs12340737-?	NR	8E-6				NR [500025]	N
1495	chr9	119392282	119392283	rs1885244	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Breast cancer	10,682 White British ancestry cases, 138,504 White British ancestry controls	NA	9q33.1		rs1885244-?	NR	3E-6		0.933716	[0.9-0.96]	NR [682398]	N
1495	chr9	119392412	119392413	rs1885245	30320955	Baird DA	2018-10-15	J Bone Miner Res	Identification of novel loci associated with hip shape: a meta-analysis of genome-wide association studies.	Hip shape (DXA scan)	10,217 European ancestry individuals, 5,717 individuals	NA	9q33.1	ASTN2	rs1885245-G	0.4	5E-9	(hip shape mode 2)	0.071	[0.047-0.095] unit increase	Illumina [7191926] (imputed)	N
1495	chr9	119394363	119394364	rs35910339	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	9q33.1		rs35910339-?	NR	6E-9				NR [~ 8900000] (imputed)	N
1495	chr9	119401649	119401650	rs803923	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	9q33.1	ASTN2	rs803923-A	0.53	3E-8		1.06	[1.04-1.08]	Affymetrix, Illumina [6224355] (imputed)	N
1495	chr9	119401649	119401650	rs803923	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FEV1/FVC)	48,943 European ancestry individuals	57,176 European ancestry individuals, 38,199 individuals.	9q33.1	ASTN2	rs803923-A	0.5395	4E-7		0.033	[0.019-0.047] unit decrease	Affymetrix [27624732] (imputed)	N
1495	chr9	119405270	119405271	rs811458	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	9q33.1	NR	rs811458-?	NR	6E-9				Affymetrix [~ 8270000] (imputed)	N
1496	chr9	119410755	119410756	rs811689	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	9q33.1		rs811689-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1496	chr9	119434289	119434290	rs803903	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	9q33.1	NR	rs803903-G	0.6805	8E-12	(EA)	0.0456	[0.032-0.059] unit increase	Illumina [~ 11800000] (imputed)	N
1496	chr9	119441236	119441237	rs57454229	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	9q33.1		rs57454229-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1496	chr9	119476269	119476270	rs719535	33407418	Jonsson A	2021-01-06	BMC Med Genomics	Genome-wide association study of circulating levels of glucagon during an oral glucose tolerance test.	Glucagon levels in response to oral glucose tolerance test (decremental area under the curve for 0-120 minutes)	553 European ancestry individuals, 1,346 individuals	NA	9q33.1	NR	rs719535-T	0.2387	4E-6		0.1772	[0.1-0.25] unit decrease	Illumina [NR] (imputed)	N
1496	chr9	119484131	119484132	rs34687269	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Osteoarthritis (hip)	15,704 European ancestry cases, 378,169 European ancestry controls	NA	9q33.1	NR	rs34687269-A	0.53	2E-12		1.09	[1.06-1.11]	Affymetrix, Illumina [up to 17000000] (imputed)	N
1496	chr9	119485336	119485337	rs10983324	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in non-diabetics	152,624 European ancestry individuals, 36,369 African American individuals	NA	9q33.1	ASTN2	rs10983324-A	0.367	1E-9		0.363	[0.25-0.48] unit decrease	Affymetrix [NR] (imputed)	N
1496	chr9	119485336	119485337	rs10983324	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	9q33.1	ASTN2	rs10983324-A	0.362	3E-10		0.0022	[0.0016-0.0028] unit decrease	Affymetrix [NR] (imputed)	N
1496	chr9	119485336	119485337	rs10983324	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	9q33.1		rs10983324-A	0.3041	4E-8		0.0084	[0.0055-0.0113] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1496	chr9	119488640	119488641	rs12376144	28000841	Baek SH	2016-12-14	Mol Med Rep	Genome-wide association scans for idiopathic osteonecrosis of the femoral head in a Korean population.	Idiopathic osteonecrosis of the femoral head	217 Korean ancestry cases, 217 Korean ancestry controls	NA	9q33.1	ASTN2	rs12376144-?	NR	7E-6				Affymetrix [509886]	N
1496	chr9	119503168	119503169	rs143417496	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		ASTN2	rs143417496-?	NR	4E-8	(female)	0.358225	[NR] unit increase	Affymetrix [NR] (imputed)	N
1496	chr9	119519587	119519588	rs1372330	30738427	Penney ME	2019-02-09	BMC Cancer	A genome-wide association study identifies single nucleotide polymorphisms associated with time-to-metastasis in colorectal cancer.	Metastasis in stage I-III microsatellite instability low/stable colorectal cancer (time to event)	379 European ancestry cases	NA	9q33.1	NR	rs1372330-A	NR	2E-8	(Cox proportional hazards regression model)	36.51	[10.47-127.34]	Illumina [810622]	N
1497	chr9	119624674	119624675	rs943306	21685187	Siedlinski M	2011-06-16	Thorax	Genome-wide association study of smoking behaviours in patients with COPD.	Lifetime average cigarettes per day in chronic obstructive pulmonary disease	3,440 European ancestry cases	NA	9q33.1	ASTN2	rs943306-T	0.4	1E-6		0.073	unit increase	Illumina [~ 6300000] (imputed)	N
1497	chr9	119643655	119643656	rs117491755	33135175	Nicoletti P	2020-11-01	Clin Pharmacol Ther	Genetic risk factors in drug-induced liver injury due to isoniazid-containing anti-tuberculosis drug regimens.	Drug-induced liver injury (isoniazid-containing anti-tuberculosis drugs)	70 European ancestry cases, 10,397 European ancestry controls	NA	9q33.1	ASTN2	rs117491755-?	0.037	2E-9		4.37	2.702-7.06	Illumina [at least 4900532] (imputed)	N
1497	chr9	119643655	119643656	rs117491755	28043905	Nicoletti P	2016-12-30	Gastroenterology	Association of Liver Injury From Specific Drugs, or Groups of Drugs, With Polymorphisms in HLA and Other Genes in a Genome-Wide Association Study.	Drug-induced liver injury (anti-tuberculosis drugs)	67 European ancestry cases, 10,588 European ancestry controls	NA	9q33.1		rs117491755-?		1E-7		3.92	2.35-6.51	Illumina [505740] (imputed)	N
1497	chr9	119656428	119656429	rs4836899	32279069	Rovira P	2020-04-12	Neuropsychopharmacology	Shared genetic background between children and adults with attention deficit/hyperactivity disorder.	Attention deficit hyperactivity disorder (persistent)	6,532 European ancestry cases, 15,874 European ancestry controls	NA	9q33.1	NR	rs4836899-T	0.52	3E-7		1.12	[1.07-1.17]	Illumina [~ 1113287] (imputed)	N
1498	chr9	119694573	119694574	rs77063336	30420678	Tasa T	2018-11-12	Eur J Hum Genet	Genetic variation in the Estonian population: pharmacogenomics study of adverse drug effects using electronic health records.	Adverse response to drug	16,226 European ancestry individuals	NA	9q33.1	ASTN2	rs77063336-T	0.047	8E-7	(Other cardiac preparations [C01EB])	3.07		Illumina [16500000] (imputed)	N
1498	chr9	119694573	119694574	rs77063336	29855537	Hirata T	2018-05-31	Sci Rep	Japanese GWAS identifies variants for bust-size, dysmenorrhea, and menstrual fever that are eQTLs for relevant protein-coding or long non-coding RNAs.	Menstruation quality of life impact (bowel movement)	903 Japanese ancestry female cases, 4,831 Japanese ancestry female controls	921 Japanese ancestry female cases, 4,693 Japanese ancestry female controls	9q33.1	NR	rs77063336-T	0.143491153	6E-7		0.24622668	[0.15-0.34] unit increase	Affymetrix [536506]	N
1498	chr9	119707771	119707772	rs10116120	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Caudal middle frontal gyrus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	9q33.1	ASTN2	rs10116120-?		5E-6				Illumina [4322238] (imputed)	N
1498	chr9	119711248	119711249	rs12347598	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	9q33.1		rs12347598-C	NR	3E-8		0.0152	[0.0099-0.0205] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
1498	chr9	119711248	119711249	rs12347598	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	9q33.1	NR	rs12347598-C	NR	1E-9		0.0188	[0.013-0.025] unit increase	Affymetrix [9000000] (imputed)	N
1498	chr9	119731044	119731045	rs10817969	30718901	Howard DM	2019-02-04	Nat Neurosci	Genome-wide meta-analysis of depression identifies 102 independent variants and highlights the importance of the prefrontal brain regions.	Depression	118,811 European ancestry cases, 327,427 European ancestry controls, 127,552 cases, 233,763 controls	414,055 European ancestry cases, 892,299 European ancestry controls	9q33.1	NR	rs10817969-T	0.7173	1E-12		1.017	[1.012-1.022]	NR [8098588] (imputed)	N
1498	chr9	119731358	119731359	rs2418449	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Major depressive disorder (MTAG)	at least 170,756 European ancestry cases, at least 329,443 European ancestry controls	NA	9q33.1	NR	rs2418449-T	0.719	3E-9		0.02728257	[0.018-0.036] unit increase	NR [NR]	N
1498	chr9	119733379	119733380	rs10759881	31926635	Coleman JRI	2019-11-01	Biol Psychiatry	The Genetics of the Mood Disorder Spectrum: Genome-wide Association Analyses of More Than 185,000 Cases and 439,000 Controls.	Bipolar disorder or major depressive disorder	164,933 European ancestry major depressive disorder cases, 20,352 European ancestry bipolar disorder cases, 439,741 European ancestry controls	NA	9q33.1	NR	rs10759881-A	NR	9E-9		1.03	[1.02-1.04]	NR [NR] (imputed)	N
1498	chr9	119733594	119733595	rs7856424	29700475	Wray NR	2018-04-26	Nat Genet	Genome-wide association analyses identify 44 risk variants and refine the genetic architecture of major depression.	Depression	135,458 European ancestry cases, 344,901 European ancestry controls	NA	9q33.1	ASTN2	rs7856424-C	0.71	9E-9		1.0309278	[1.02-1.04]	NR [9622763] (imputed)	N
1498	chr9	119766781	119766782	rs10817971	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	9q33.1	Intergenic	rs10817971-?	NR	7E-6		1.4070635	[NR]	Affymetrix [492217] (imputed)	N
1498	chr9	119798884	119798885	rs7036846	25524916	Palmer ND	2014-12-18	Diabetes	Genetic Variants Associated With Quantitative Glucose Homeostasis Traits Translate to Type 2 Diabetes in Mexican Americans: The GUARDIAN (Genetics Underlying Diabetes in Hispanics) Consortium.	Glucose homeostasis traits	up to 4,176 Mexican American individuals	NA	9q33.1	ASTN2	rs7036846-?		9E-6	(AIRg)	10.86	[6.1-15.62] unit increase	Illumina [693128]	N
1499	chr9	119839327	119839328	rs16934284	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	9q33.1	ASTN2	rs16934284-G	0.085	2E-6	(AST )	0.03	[NR] U/L increase	Illumina [899892]	N
1499	chr9	119899452	119899453	rs34749153	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	9q33.1	Intergenic	rs34749153-?	NR	9E-6		1.368	[NR]	Affymetrix [492217] (imputed)	N
1499	chr9	119925094	119925095	rs6478282	22658931	Pajewski NM	2012-05-30	Vaccine	A genome-wide association study of host genetic determinants of the antibody response to Anthrax Vaccine Adsorbed.	Immune response to anthrax vaccine	726 European ancestry individuals	NA	9q33.1	ASTN2	rs6478282-A	NR	6E-6		0.101	[0.058-0.144] unit increase	Affymetrix [736996]	N
1499	chr9	119926425	119926426	rs4838255	20195266	Adkins DE	2010-03-02	Mol Psychiatry	Genomewide pharmacogenomic study of metabolic side effects to antipsychotic drugs.	Response to antipsychotic treatment	421 European ancestry, 214 African American, and 103 cases	NA	9q33.1	ASTN2	rs4838255-?	0.139	3E-7	(perphenazine-triglycerides)			Affymetrix [492900]	N
1500	chr9	119948462	119948463	rs7858026	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar I disorder	14,879 European ancestry cases, 31,358 European ancestry controls	NA	9q33.1	NR	rs7858026-T	0.476	1E-6		1.0790745	[NR]	NR [9372253] (imputed)	N
1500	chr9	120001430	120001431	rs35623509	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling guilty	373,380 European ancestry individuals	NA	9q33.1	ASTN2	rs35623509-C	0.271529	2E-8		5.61	z score increase	NR [10847151] (imputed)	N
1500	chr9	120016345	120016346	rs1335415	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	9q33.1	NR	rs1335415-?	NR	2E-9				Affymetrix [NR]	N
1501	chr9	120068353	120068354	rs10733628	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	9q33.1	TLR4	rs10733628-?	NR	1E-6	(histidine)	0.16996329	[0.1-0.24] unit increase	Affymetrix [at least 2500000] (imputed)	N
1501	chr9	120069152	120069153	rs10983614	28470677	Tang H	2017-05-03	Int J Cancer	Genetic polymorphisms associated with pancreatic cancer survival: a genome-wide association study.	Survival in pancreatic cancer	868 European ancestry cases	820 European ancestry cases	9q33.1	ASTN2	rs10983614-?	NR	9E-7		1.369863	[1.22-1.56]	NR [7738399] (imputed)	N
1501	chr9	120099046	120099047	rs1339921	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	9q33.1		rs1339921-T	0.47	2E-8		5.62	z score increase	Affymetrix [9061022] (imputed)	N
1501	chr9	120099046	120099047	rs1339921	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	9q33.1	NR	rs1339921-T	0.4897	3E-9				NR [9056863] (imputed)	N
1501	chr9	120111299	120111300	rs7874694	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	9q33.1	TLR4	rs7874694-?	NR	4E-6	(SM 16:1)	0.22223601	[0.13-0.32] unit increase	Affymetrix [at least 2500000] (imputed)	N
1501	chr9	120127680	120127681	rs189233549	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in diabetes mellitus	153 Korean ancestry cases, 5,161 Korean ancestry controls	NA	9q33.1		rs189233549-G	0.01224	8E-6		3.907	[2.148-7.107]	Affymetrix [7975321] (imputed)	N
1501	chr9	120137757	120137758	rs2226006	22566634	Benjamin DJ	2012-05-07	Proc Natl Acad Sci U S A	The genetic architecture of economic and political preferences.	Economic and political preferences (fairness)	9,617 European ancestry individuals	NA	9q33.1	ASTN2	rs2226006-T	NR	6E-6		0.111	[0.062-0.160] unit decrease	Illumina [628922]	N
1502	chr9	120207895	120207896	rs562775223	33482370	Kim SK	2021-01-19	J Shoulder Elbow Surg	A Genome Wide Association Study For Shoulder Impingement and Rotator Cuff Disease.	Shoulder impingement or rotator cuff tear	3,864 European ancestry shoulder impingement cases, 5,701 European ancestry rotator cuff tear cases, up to 614,568 European ancestry controls	NA	9q33.1	ASTN2	rs562775223-G	0.0019	3E-8		2.0986	NR	Affymetrix [up to 17556449] (imputed)	N
1502	chr9	120267935	120267936	rs56131188	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	9q33.1	Intergenic	rs56131188-T	0.3901	2E-9	(MTAG)	0.0102	[0.0069-0.0135] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1502	chr9	120307011	120307012	rs524440	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling guilty	373,380 European ancestry individuals	NA	9q33.1	TLR4	rs524440-T	0.0447839	3E-8		5.54	z score increase	NR [10847151] (imputed)	N
1503	chr9	120326599	120326600	rs579017	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	9q33.1	NR	rs579017-T	NR	4E-8		5.471	z score increase	Affymetrix [10847151] (imputed)	N
1503	chr9	120326599	120326600	rs579017	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	9q33.1	TLR4	rs579017-T	0.0602504	2E-8		5.65	z score increase	NR [10847151] (imputed)	N
1503	chr9	120327399	120327400	rs1159787	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	9q33.1	Intergenic	rs1159787-T	0.2088353	8E-11	(EA, Toll-like receptor 4:Lymphocyte antigen 96 complex)	0.3492	[0.25-0.45] unit decrease	Affymetrix [509946]	N
1503	chr9	120377177	120377178	rs7038943	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	9q33.1		rs7038943-C	NR	7E-12		0.0134	[0.0095-0.0173] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1503	chr9	120377177	120377178	rs7038943	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		9q33.1	TLR4	rs7038943-T	0.661365	2E-10		0.00926108	[0.0064-0.0121] unit increase	Affymetrix [12370749]	N
1503	chr9	120377177	120377178	rs7038943	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	9q33.1	NR	rs7038943-?	NR	2E-11				Affymetrix [~ 8270000] (imputed)	N
1503	chr9	120377177	120377178	rs7038943	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	9q33.1		rs7038943-?	NR	4E-11				NR [~ 8900000] (imputed)	N
1503	chr9	120378482	120378483	rs1928295	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	9q33.1	NA	rs1928295-T	0.5712	2E-16		0.0134	[0.01-0.017] unit increase	NR [~ 27400000] (imputed)	N
1503	chr9	120378482	120378483	rs1928295	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	9q33.1	NA	rs1928295-T	0.5712	2E-16		0.0134	[0.01-0.017] unit increase	NR [~ 27400000] (imputed)	N
1503	chr9	120378482	120378483	rs1928295	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	9q33.1	NR	rs1928295-T	NR	1E-10		0.016	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
1503	chr9	120378482	120378483	rs1928295	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	9q33.1	ASTN2, LOC101928797	rs1928295-C	0.43	2E-13		0.017	[0.013-0.021] unit decrease	Illumina [6108953] (imputed)	N
1503	chr9	120378482	120378483	rs1928295	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	9q33.1	ASTN2, TLR4	rs1928295-T	0.5513	6E-6	(women)	0.0224	[0.013-0.032] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1503	chr9	120378482	120378483	rs1928295	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	9q33.1	ASTN2, TLR4	rs1928295-T	0.5499	5E-8		0.0215	[0.014-0.029] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1503	chr9	120378482	120378483	rs1928295	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	9q33.1	ASTN2, TLR4	rs1928295-T	0.5482	9E-6	(EA,women)	0.0235	[0.013-0.034] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1503	chr9	120378482	120378483	rs1928295	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	9q33.1	ASTN2, TLR4	rs1928295-T	0.547	1E-7	(EA)	0.022	[0.014-0.03] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1503	chr9	120378482	120378483	rs1928295	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	9q33.1	ASTN2, TLR4	rs1928295-?	NR	3E-6	(women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1503	chr9	120378482	120378483	rs1928295	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	9q33.1	ASTN2, TLR4	rs1928295-?	NR	3E-6	(EA, women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1503	chr9	120378482	120378483	rs1928295	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	9q33.1	ASTN2, TLR4	rs1928295-?	NR	2E-8	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1503	chr9	120378482	120378483	rs1928295	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	9q33.1	ASTN2, TLR4	rs1928295-?	NR	2E-8				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1503	chr9	120378482	120378483	rs1928295	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	9q33.1	ASTN2, TLR4	rs1928295-T	0.5499	9E-7	(women)	0.0221	[0.013-0.031] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1503	chr9	120378482	120378483	rs1928295	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	9q33.1	ASTN2, TLR4	rs1928295-T	0.5499	1E-8		0.0202	[0.013-0.027] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1503	chr9	120378482	120378483	rs1928295	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	9q33.1	ASTN2, TLR4	rs1928295-T	0.547	2E-6	(EA, women)	0.0229	[0.013-0.032] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1503	chr9	120378482	120378483	rs1928295	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	9q33.1	ASTN2, TLR4	rs1928295-T	0.547	1E-8	(EA)	0.0216	[0.014-0.029] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1503	chr9	120378482	120378483	rs1928295	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	9q33.1	TLR4	rs1928295-T	0.5549	2E-6	(women)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1503	chr9	120378482	120378483	rs1928295	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	9q33.1	TLR4	rs1928295-T	0.5549	1E-8				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1503	chr9	120378482	120378483	rs1928295	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in non-smokers	77,279 European ancestry women, 47,280 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	9q33.1	TLR4	rs1928295-T	0.5549	7E-9		0.0221	[0.015-0.03] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1503	chr9	120378482	120378483	rs1928295	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in non-smokers	77,279 European ancestry women, 47,280 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	9q33.1	TLR4	rs1928295-T	0.5549	2E-6	(women)	0.0242	[0.014-0.034] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1503	chr9	120378482	120378483	rs1928295	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	9q33.1	TLR4	rs1928295-T	0.5549	7E-7	(women)	0.0222	[0.013-0.031] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1503	chr9	120378482	120378483	rs1928295	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	9q33.1	TLR4	rs1928295-T	0.5549	1E-8		0.0191	[0.013-0.026] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1503	chr9	120378482	120378483	rs1928295	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	9q33.1	NR	rs1928295-T	0.54701226419507	2E-12		0.019130511	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1503	chr9	120378482	120378483	rs1928295	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	9q33.1	TLR4	rs1928295-T	0.55	4E-10		0.018	[0.013-0.024] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1503	chr9	120378482	120378483	rs1928295	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	9q33.1	TLR4	rs1928295-T	0.549	3E-11	(EA, women)	0.026	[0.018-0.033] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1503	chr9	120378482	120378483	rs1928295	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	9q33.1	TLR4	rs1928295-T	0.548	8E-10	(EA)	0.019	[0.013-0.025] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1503	chr9	120380641	120380642	rs55654527	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	9q33.1		rs55654527-A	NR	8E-12		0.0117	[0.0084-0.015] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1503	chr9	120397877	120397878	rs78417933	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	9q33.1	NR	rs78417933-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
1503	chr9	120405704	120405705	rs957512	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	9q33.1	TLR4	rs957512-T	0.669786	5E-12		0.0103405	[0.0074-0.0133] unit increase	Affymetrix [12370749]	N
1503	chr9	120435776	120435777	rs7870128	30353303	Seo M	2018-10-23	J Mol Med (Berl)	Genomics and response to long-term oxygen therapy in chronic obstructive pulmonary disease.	Response to long-term oxygen therapy in chronic obstructive pulmonary disease	290 European ancestry individuals	NA	9q33.1	NR	rs7870128-?	NR	1E-6				Illumina [5946283] (imputed)	N
1503	chr9	120446695	120446696	rs13296664	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	9q33.1	RPL35AP22	rs13296664-C	NR	3E-8		0.0095943	[0.0062-0.013] unit increase	Affymetrix [18485882] (imputed)	N
1503	chr9	120446695	120446696	rs13296664	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	9q33.1	NR	rs13296664-?	NR	5E-9		0.01521	[0.01-0.02] unit increase	Affymetrix [10847151] (imputed)	N
1504	chr9	120464724	120464725	rs1927914	30584014	Huang M	2018-12-12	Neuroimage Clin	Spatial correlations exploitation based on nonlocal voxel-wise GWAS for biomarker detection of AD.	Voxel-wise structural brain imaging measurements in Alzheimer's disease	708 European ancestry individuals	NA	9q33.1	TLR4	rs1927914-?	NR	1E-6	(Gaussian-weighted model)			Illumina [501584]	N
1504	chr9	120469831	120469832	rs11536869	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	9q33.1	NR	rs11536869-?	NR	1E-9				Affymetrix [NR]	N
1504	chr9	120473833	120473834	rs5030717	24823311	Guan W	2014-05-13	Circ Cardiovasc Genet	Genome-wide association study of plasma N6 polyunsaturated fatty acids within the cohorts for heart and aging research in genomic epidemiology consortium.	Plasma omega-6 polyunsaturated fatty acid levels (dihomo-gamma-linolenic acid)	8,631 European ancestry individuals	NA	9q33.1	TLR4	rs5030717-A	0.887	1E-6		0.1	[NR] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1504	chr9	120475301	120475302	rs4986790	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q33.1	TLR4	rs4986790-G	0.056	3E-70	(Toll-like receptor 4:Lymphocyte antigen 96 complex, TLR4.LY96.3647.49.4)	0.9	[0.8-1] unit decrease	Affymetrix [10572788] (imputed)	N
1504	chr9	120475301	120475302	rs4986790	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	9q33.1	TLR4	rs4986790-?	NR	1E-8	(subset analysis)			Illumina [130052]	N
1504	chr9	120475601	120475602	rs4986791	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	9q33.1	TLR4, RNU6-1082P	rs4986791-T	0.06820461	2E-50	(EA, Toll-like receptor 4:Lymphocyte antigen 96 complex)	1.269	[1.11-1.43] unit decrease	Affymetrix [509946]	N
1504	chr9	120484008	120484009	rs913930	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	9q33.1		rs913930-?	NR	1E-8		0.0177	unit decrease	NR [NR]	N
1504	chr9	120484008	120484009	rs913930	30718901	Howard DM	2019-02-04	Nat Neurosci	Genome-wide meta-analysis of depression identifies 102 independent variants and highlights the importance of the prefrontal brain regions.	Depression	118,811 European ancestry cases, 327,427 European ancestry controls, 127,552 cases, 233,763 controls	414,055 European ancestry cases, 892,299 European ancestry controls	9q33.1	NR	rs913930-G	0.3567	1E-21		1.0224949	[1.02-1.03]	NR [8098588] (imputed)	N
1504	chr9	120484008	120484009	rs913930	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	9q33.1	NR	rs913930-A	NR	2E-10		6.342	z score decrease	Affymetrix [10847151] (imputed)	N
1504	chr9	120490856	120490857	rs2094580	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Neuroticism	274,107 British ancestry individuals	NA	9q33.1	NR	rs2094580-G	0.2825	3E-8		0.01071	[0.0069-0.0145] unit increase	NR [8968716] (imputed)	N
1504	chr9	120496386	120496387	rs7025144	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Anxiety	at least 23,606 European ancestry cases, at least 113,351 European ancestry controls	624,615 European ancestry cases, 1,310,854 European ancestry controls	9q33.1	snoZ13_snr52	rs7025144-T	0.2584	1E-7		0.013598426	[0.0079-0.0193] unit increase	NR [9417325] (imputed)	N
1504	chr9	120496386	120496387	rs7025144	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on self-rated math ability (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	9q33.1		rs7025144-?	NR	8E-10				NR [NR]	N
1504	chr9	120496386	120496387	rs7025144	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	9q33.1		rs7025144-?	NR	1E-11				NR [~ 8900000] (imputed)	N
1504	chr9	120496386	120496387	rs7025144	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	9q33.1	NR	rs7025144-T	NR	6E-13		7.202	z score increase	Affymetrix [10847151] (imputed)	N
1504	chr9	120497957	120497958	rs10465133	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	9q33.1	NR	rs10465133-T	NR	2E-8		5.583	z score decrease	Affymetrix [10847151] (imputed)	N
1504	chr9	120498976	120498977	rs4388521	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on educational attainment (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	9q33.1		rs4388521-?	NR	6E-9				NR [NR]	N
1504	chr9	120500532	120500533	rs7034482	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on Townsend deprivation index (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	9q33.1		rs7034482-?	NR	1E-9				NR [NR]	N
1504	chr9	120501643	120501644	rs2149351	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Depression	at least 5,919 European ancestry cases, at least 130,691 European ancestry controls	634,037 European ancestry cases, 1,308,690 European ancestry controls	9q33.1	snoZ13_snr52	rs2149351-T	0.2227	4E-16		0.021516323	[0.016-0.027] unit increase	NR [9417325] (imputed)	N
1504	chr9	120501643	120501644	rs2149351	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on highest math class (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	9q33.1		rs2149351-?	NR	2E-9				NR [NR]	N
1504	chr9	120501643	120501644	rs2149351	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on cognitive performance (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	9q33.1		rs2149351-?	NR	2E-9				NR [NR]	N
1504	chr9	120501643	120501644	rs2149351	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on average household income before tax (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	9q33.1		rs2149351-?	NR	2E-8				NR [NR]	N
1504	chr9	120501643	120501644	rs2149351	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms (MTAG)	955,012 individuals	NA	9q33.1	NR	rs2149351-?		1E-8				NR [520857]	N
1504	chr9	120501643	120501644	rs2149351	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms	688,809 individuals	NA	9q33.1	NR	rs2149351-?		3E-8				NR [11140414]	N
1504	chr9	120501643	120501644	rs2149351	31926635	Coleman JRI	2019-11-01	Biol Psychiatry	The Genetics of the Mood Disorder Spectrum: Genome-wide Association Analyses of More Than 185,000 Cases and 439,000 Controls.	Bipolar disorder or major depressive disorder	164,933 European ancestry major depressive disorder cases, 20,352 European ancestry bipolar disorder cases, 439,741 European ancestry controls	NA	9q33.1	NR	rs2149351-?	NR	6E-7				NR [NR] (imputed)	N
1504	chr9	120501643	120501644	rs2149351	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	9q33.1	ENSG00000251847	rs2149351-T	NR	1E-9		0.010539	[0.0072-0.0139] unit decrease	Affymetrix [18485882] (imputed)	N
1504	chr9	120501643	120501644	rs2149351	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	9q33.1	NR	rs2149351-G	0.75892153042704	8E-15		0.008344443	[0.0062-0.0104] unit decrease	NR [NR]	N
1504	chr9	120501643	120501644	rs2149351	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	9q33.1	NR	rs2149351-G	0.75892153042704	1E-13		0.010220588	[0.0075-0.0129] unit decrease	NR [NR]	N
1504	chr9	120501643	120501644	rs2149351	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	9q33.1	NR	rs2149351-G	0.75892153042704	1E-14		0.01342802	[0.01-0.017] unit decrease	NR [NR]	N
1504	chr9	120501643	120501644	rs2149351	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	9q33.1	NR	rs2149351-G	0.75892153042704	1E-13		0.010892583	[0.008-0.0138] unit decrease	NR [NR]	N
1504	chr9	120501643	120501644	rs2149351	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	9q33.1	NR	rs2149351-G	0.75892153042704	1E-14		0.0085234735	[0.0064-0.0107] unit decrease	NR [NR]	N
1504	chr9	120501643	120501644	rs2149351	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depression	688,809 European ancestry individuals	NA	9q33.1	NR	rs2149351-T	NR	3E-8		5.553	z score increase	Affymetrix [10847151] (imputed)	N
1504	chr9	120501643	120501644	rs2149351	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	9q33.1	NR	rs2149351-T	NR	2E-9		0.0162	[0.011-0.022] unit increase	Affymetrix [10847151] (imputed)	N
1504	chr9	120501643	120501644	rs2149351	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	9q33.1	TLR4	rs2149351-T	0.238985	5E-12		6.9	z score increase	NR [10847151] (imputed)	N
1504	chr9	120501643	120501644	rs2149351	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling fed-up	374,971 European ancestry individuals	NA	9q33.1	TLR4	rs2149351-T	0.238985	4E-8		5.49	z score increase	NR [10847151] (imputed)	N
1504	chr9	120501643	120501644	rs2149351	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Neuroticism (MTAG)	168,105 European ancestry individuals	NA	9q33.1	NR	rs2149351-T	0.2415	3E-9		0.0193	[0.013-0.026] unit increase	Illumina [NR] (imputed)	N
1504	chr9	120501643	120501644	rs2149351	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	9q33.1	TLR4	rs2149351-T	0.23899000000000004	1E-11		6.793	z score increase	Illumina [18485882] (imputed)	N
1504	chr9	120501643	120501644	rs2149351	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Neuroticism	170,911 European ancestry individuals	NA	9q33.1	NR	rs2149351-T	0.23	4E-6		0.018736271	[0.011-0.027] unit increase	Affymetrix [up to 6544775] (imputed)	N
1504	chr9	120514260	120514261	rs10739499	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	9q33.1	NR	rs10739499-?		2E-9		0.0138371	[0.0093-0.0183] unit increase	Affymetrix [19400418] (imputed)	N
1504	chr9	120514463	120514464	rs1999066	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	9q33.1	ENSG00000251847	rs1999066-G	NR	4E-9		0.010309	[0.0069-0.0137] unit decrease	Affymetrix [18485882] (imputed)	N
1504	chr9	120514463	120514464	rs1999066	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	9q33.1	NR	rs1999066-C	NR	2E-8		5.639	z score decrease	Affymetrix [10847151] (imputed)	N
1504	chr9	120514953	120514954	rs1927903	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Irritable mood	366,726 European ancestry individuals	NA	9q33.1	TLR4	rs1927903-C	0.341928	5E-8		5.47	z score decrease	NR [~ 10847151] (imputed)	N
1504	chr9	120516272	120516273	rs2149355	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	9q33.1	NR	rs2149355-G	0.75	4E-11		0.0111461	[0.0078-0.0144] unit increase	NR [9732723] (imputed)	N
1504	chr9	120516363	120516364	rs115981497	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-16 levels	3,483 Finnish ancestry individuals	NA	9q33.1	NR	rs115981497-T		4E-6		0.8306	[0.5-1.16] SD units increase	NR [10700000] (imputed)	N
1504	chr9	120516799	120516800	rs2149354	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	9q33.1	NR	rs2149354-T	0.75	6E-14		0.00933449	[0.0069-0.0118] unit decrease	NR [9732723] (imputed)	N
1504	chr9	120517843	120517844	rs4837502	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms (MTAG)	354,862 European ancestry individuals	NA	9q33.1	NR	rs4837502-A	0.736	1E-8		0.0137	[0.009-0.0184] unit decrease	Illumina [NR] (imputed)	N
1504	chr9	120518515	120518516	rs7021145	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	9q33.1		rs7021145-T	0.45	2E-8		0.007	[0.005-0.009] unit increase	NR [NR] (imputed)	N
1504	chr9	120518990	120518991	rs1927902	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	9q33.1	NR	rs1927902-T	0.2542	1E-14		1.054	[1.04-1.07]	Affymetrix, Illumina [NR] (imputed)	N
1504	chr9	120519110	120519111	rs1927901	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	9q33.1	NR	rs1927901-C	0.553	3E-8		0.014175487	[0.0092-0.0192] unit decrease	NR [~ 10000000] (imputed)	N
1504	chr9	120519693	120519694	rs1927898	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	9q33.1	NA	rs1927898-C	0.2532	1E-8	(Female)	1.0504202	[1.03-1.07]	Affymetrix, Illumina [NR] (imputed)	N
1504	chr9	120521095	120521096	rs4442212	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Subjective well-being (MTAG)	388,538 European ancestry individuals	NA	9q33.1	NR	rs4442212-C	0.5601	7E-9		0.0108	[0.0071-0.0145] unit increase	Illumina [NR] (imputed)	N
1504	chr9	120521099	120521100	rs10983775	34450027	Boer CG	2021-08-24	Cell	Deciphering osteoarthritis genetics across 826,690 individuals from 9 populations.	Osteoarthritis (hip)	36,445 European ancestry cases, 316,943 European ancestry controls	NA	9q33.1		rs10983775-T	0.5417	5E-9		0.94838	[0.931797581-0.965257548]	Affymetrix, Illumina [NR] (imputed)	N
1504	chr9	120526111	120526112	rs10983778	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	9q33.1	NR	rs10983778-A	NR	7E-10		6.17	z score increase	Affymetrix [10847151] (imputed)	N
1504	chr9	120534665	120534666	rs10983783	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Experiencing mood swings	373,733 European ancestry individuals	NA	9q33.1	TLR4	rs10983783-T	0.446653	1E-8		5.72	z score decrease	NR [10847151] (imputed)	N
1504	chr9	120555844	120555845	rs4604518	33568662	Dashti HS	2021-02-10	Nat Commun	Genetic determinants of daytime napping and effects on cardiometabolic health.	Daytime nap	452,633 European ancestry individuals	541,333 European ancestry individuals	9q33.1	TLR4	rs4604518-G		2E-13		0.0063	[0.0045-0.0081] unit increase	Affymetrix [13304133] (imputed)	N
1504	chr9	120559010	120559011	rs10115586	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	9q33.1	NR	rs10115586-C	0.70273622340899	5E-7	(IGP7)	0.1676	[0.1-0.23] unit decrease	Illumina [~ 2500000] (imputed)	N
1505	chr9	120618624	120618625	rs111600634	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	9q33.1	TLR4, DBC1	rs111600634-T	0.01	8E-7		0.3036	[0.18-0.42] unit increase	Illumina [~ 9000000] (imputed)	N
1505	chr9	120618955	120618956	rs16906350	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	9q33.1	TLR4, DBC1	rs16906350-C	0.03	6E-7	(EA)	0.3092	[0.19-0.43] unit increase	Illumina [~ 9000000] (imputed)	N
1505	chr9	120659607	120659608	rs7028185	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	9q33.1		rs7028185-?	NR	6E-8				NR [~ 8900000] (imputed)	N
1505	chr9	120663382	120663383	rs12552443	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	9q33.1	NR	rs12552443-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
1505	chr9	120663382	120663383	rs12552443	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	9q33.1		rs12552443-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1505	chr9	120664468	120664469	rs1877875	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	9q33.1	NA	rs1877875-T	0.4341	3E-10		0.0109	[0.0076-0.0142] unit decrease	NR [~ 27400000] (imputed)	N
1505	chr9	120672882	120672883	rs12001550	31095298	Huang M	2019-05-16	Bioinformatics	Incorporating spatial-anatomical similarity into the VGWAS framework for AD biomarker detection.	Voxel-wise structural brain imaging measurements in Alzheimer's disease	708 European ancestry individuals	NA	9q33.1	intergenic	rs12001550-?	NR	2E-6				Illumina [501584]	N
1505	chr9	120676436	120676437	rs4837523	28203683	Heit JA	2017-02-16	Thromb Haemost	Identification of unique venous thromboembolism-susceptibility variants in African-Americans.	Venous thromboembolism adjusted for sickle cell variant rs77121243-T	393 African American cases, 4,941 African American controls.	NR	9q33.1	LOC389787	rs4837523-?	0.66	4E-6		1.5503876		Affymetrix, Illumina [14074516] (imputed)	N
1505	chr9	120677876	120677877	rs3914453	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	9q33.1	ENSG00000231901	rs3914453-A	NR	5E-8		5.463	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1506	chr9	120725409	120725410	rs2491646	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9q33.1		rs2491646-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1506	chr9	120732748	120732749	rs6478343	28139693	Hoffmann TJ	2017-01-31	Nat Commun	Genome-wide association study of prostate-specific antigen levels identifies novel loci independent of prostate cancer.	Prostate-specific antigen levels	28,503 European ancestry individuals	2,716 Latino individuals, 2,518 East Asian ancestry individuals, 1,585 African American individuals, 6,193 European ancestry individuals (later diagnosed with prostate cancer), 5,603 European ancestry individuals	9q33.1	TLR4	rs6478343-C	0.82	2E-8		0.0415085	[0.027-0.056] unit increase	Affymetrix [10109774] (imputed)	N
1506	chr9	120745945	120745946	rs149407265	30098192	Shaaban S	2018-08-01	Invest Ophthalmol Vis Sci	Genome-Wide Association Study Identifies a Susceptibility Locus for Comitant Esotropia and Suggests a Parent-of-Origin Effect.	Amblyopia	386 European ancestry cases, 1,700 European ancestry controls	45 European ancestry cases, 180 European ancestry controls	9q33.1	NR	rs149407265-G	NR	4E-6		2.66	NR	Illumina [6470615] (imputed)	N
1506	chr9	120793764	120793765	rs138901640	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	9q33.1	TLR4, DBC1, MIR147A	rs138901640-A	0.01	3E-7		0.3802	[0.24-0.52] unit increase	Illumina [~ 9000000] (imputed)	N
1506	chr9	120793764	120793765	rs138901640	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	9q33.1	TLR4, DBC1	rs138901640-A	0.01	1E-6	(EA)	0.3723	[0.22-0.52] unit increase	Illumina [~ 9000000] (imputed)	N
1506	chr9	120795989	120795990	rs2416604	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	9q33.1	TLR4	rs2416604-A	0.43	3E-6	(Vigorous activity )	0.03	[NR] min/d increase	Illumina [899892]	N
1506	chr9	120835897	120835898	rs148155931	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in hypertension	398 Korean ancestry cases, 15,909 Korean ancestry controls	NA	9q33.1		rs148155931-T	0.02029	3E-6		2.372	[1.648-3.415]	Affymetrix [7975321] (imputed)	N
1507	chr9	120854938	120854939	rs2722806	30753327	Hishida A	2019-02-08	Carcinogenesis	GWAS analysis reveals a significant contribution of PSCA to the risk of Heliobacter pylori-induced gastric atrophy.	Pepsinogen I/II ratio	3,385 Japanese ancestry individuals	2,885 Japanese ancestry individuals	9q33.1	LOC105376247	rs2722806-T	0.271	3E-6		0.098	[0.051-0.145] unit increase	Illumina [575802]	N
1507	chr9	120887006	120887007	rs143378631	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Strep throat	52,487 European ancestry cases, 22,017 European ancestry controls	NA	9q33.1	NR	rs143378631-?	NR	7E-6		0.0644	[0.036-0.092] unit increase	Illumina [at least 560000] (imputed)	N
1507	chr9	120891769	120891770	rs1115375	33109212	Chang H	2020-10-28	BMC Med	Genetic architecture of cardiometabolic risks in people living with HIV.	LDL cholesterol levels in HIV infection	3,095 European ancestry individuals, 3,189 African American individuals	NA	9q33.1	TLR4, BRINP1	rs1115375-?		5E-6	(EA)	0.15491548	[0.088-0.222] unit decrease	Illumina [13620258] (imputed)	N
1507	chr9	120891769	120891770	rs1115375	33109212	Chang H	2020-10-28	BMC Med	Genetic architecture of cardiometabolic risks in people living with HIV.	LDL cholesterol levels in HIV infection	3,095 European ancestry individuals, 3,189 African American individuals	NA	9q33.1	TLR4, BRINP1	rs1115375-?		5E-6	(African American)	0.15491548	[0.088-0.222] unit decrease	Illumina [13620258] (imputed)	N
1507	chr9	120896389	120896390	rs1327808	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	9q33.1		rs1327808-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1508	chr9	121031028	121031029	rs876347	19875103	Aberg K	2009-10-27	Biol Psychiatry	Genomewide association study of movement-related adverse antipsychotic effects.	Response to antipsychotic therapy (extrapyramidal side effects)	421 European ancestry schizophrenia cases, 214 African American schizophrenia cases, 103 schizophrenia cases	NA	9q33.1	intergenic	rs876347-?	NR	2E-6	(SAS)			Affymetrix [492000]	N
1508	chr9	121072414	121072415	rs188730386	30718321	Sanchez-Roige S	2019-02-04	J Neurosci	Genome-wide association studies of impulsive personality traits (BIS-11 and UPPSP) and drug experimentation in up to 22,861 adult research participants identify loci in the CACNA1I and CADM2 genes.	Impulsivity (motor)	21,806 European ancestry individuals	NA	9q33.1	TLR4, BRINP1	rs188730386-G	0.0015	1E-6		0.691	[0.968-0.415] unit decrease	Illumina [11434023] (imputed)	N
1508	chr9	121096680	121096681	rs76235882	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	9q33.1		rs76235882-A	0.966	5E-10		0.0241	[0.016-0.032] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1509	chr9	121125745	121125746	rs10429475	25057126	Ramos YF	2014-07-23	J Med Genet	Meta-analysis identifies loci affecting levels of the potential osteoarthritis biomarkers sCOMP and uCTX-II with genome wide significance.	Osteoarthritis biomarkers	up to 4,654 European ancestry individuals	964 European ancestry individuals	9q33.1	DBC1, TLR4	rs10429475-T	0.454	1E-6	(sCOMP)	0.11	[NR] unit increase	Illumina [up to 1961964] (imputed)	N
1509	chr9	121150319	121150320	rs80071768	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	9q33.1	Intergenic	rs80071768-C	0.0655	2E-9	(MTAG)	0.0158	[0.011-0.021] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1509	chr9	121161925	121161926	rs7030373	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	9q33.1		rs7030373-A	0.2074	1E-8		0.0098	[0.0065-0.0131] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1509	chr9	121222682	121222683	rs1342494	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Non-Hodgkin's lymphoma	2,400 European ancestry cases, 410,350 European ancestry controls	NA	9q33.1		rs1342494-A	0.508701	3E-7		1.1613053	NR	Affymetrix [7846216] (imputed)	N
1510	chr9	121295015	121295016	rs17375163	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	9q33.1	TLR4	rs17375163-?	NR	2E-6	(UDP glucose; UDP galactose)	0.8010732	[0.47-1.13] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1510	chr9	121346416	121346417	rs1572299	19571808	Stefansson H	2009-07-01	Nature	Common variants conferring risk of schizophrenia.	Schizophrenia	2,663 European ancestry cases, 13,498 European ancestry controls	10,282 European ancestry cases, 21,093 European ancestry controls	9q33.1	intergenic	rs1572299-A	NR	4E-6		1.08	[NR]	Illumina [314868]	N
1510	chr9	121359285	121359286	rs11789399	20889312	Wang KS	2010-10-01	Schizophr Res	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	9q33.1	ASTN2	rs11789399-?	NR	6E-9		1.2935	[NR]	Affymetrix [722112]	N
1511	chr9	121431188	121431189	rs74308953	26220383	Jang HW	2015-06-02	Epilepsy Res	GWAS identifies two susceptibility loci for lamotrigine-induced skin rash in patients with epilepsy.	Epilepsy and lamotrigine-induced maculopapular eruptions	34 Korean ancestry cases, 1,080 Korean ancestry healthy controls	NA	9q33.1	intergenic	rs74308953-A	0.12	2E-10		4.6	[NR]	Affymetrix [4893794] (imputed)	N
1512	chr9	121568539	121568540	rs10984237	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	9q33.1		rs10984237-?	NR	7E-11				NR [~ 8900000] (imputed)	N
1513	chr9	121640303	121640304	rs71507562	34054130	Bralten J	2021-05-30	Neuropsychopharmacology	Genetic underpinnings of sociability in the general population.	Sociability score	342,461 European ancestry individuals	NA	9q33.1	TUBB4BP6	rs71507562-G	NR	2E-8		0.01383	unit increase	Affymetrix [9327396] (imputed)	N
1513	chr9	121645034	121645035	rs190716119	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	9q33.1	NR	rs190716119-?	NR	9E-6		4.432	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1513	chr9	121655664	121655665	rs7019215	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	9q33.1		rs7019215-A	NR	1E-8		0.0103	[0.0068-0.0138] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1513	chr9	121758136	121758137	rs117684543	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	9q33.1	intergenic	rs117684543-A	0.0153663162045459	2E-6	(F_Sutterellaceae_HB)	1.44477	[0.84-2.05] unit decrease	Illumina [7711310] (imputed)	N
1514	chr9	121800142	121800143	rs10119834	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	9q33.1	NR	rs10119834-?	NR	2E-7				Affymetrix [NR]	N
1514	chr9	121859106	121859107	rs10117876	28763429	Serie DJ	2017-07-31	Pharmacogenet Genomics	Genome-wide association study of cardiotoxicity in the NCCTG N9831 (Alliance) adjuvant trastuzumab trial.	Change in LVEF in response to paclitaxel and trastuzumab in HER2+ breast cancer	800 European ancestry cases	NA	9q33.1	BRINP1	rs10117876-?	NR	6E-7		7.79	[4.76-10.82] unit decrease	Affymetrix [618793]	N
1515	chr9	121971769	121971770	rs182700414	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	9q33.1	DBC1	rs182700414-T	0.017	4E-6		0.047	unit decrease	Illumina [NR] (imputed)	N
1515	chr9	121980346	121980347	rs10984444	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	9q33.1	Intergenic	rs10984444-A	0.5169	1E-15	(MTAG)	0.0105	[0.008-0.013] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1515	chr9	121980585	121980586	rs10984445	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	9q33.1	BRINP1	rs10984445-A	0.4517	3E-8		0.011221293	[0.0072-0.0152] unit increase	Affymetrix [up to 18485882] (imputed)	N
1515	chr9	121980585	121980586	rs10984445	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	9q33.1		rs10984445-?	NR	9E-10				NR [~ 8900000] (imputed)	N
1515	chr9	121980585	121980586	rs10984445	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	9q33.1		rs10984445-A	0.4604	3E-16		0.0115	[0.0088-0.0142] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1515	chr9	121984552	121984553	rs10984447	17660530	Hafler DA	2007-07-29	N Engl J Med	Risk alleles for multiple sclerosis identified by a genomewide study.	Multiple sclerosis	931 European ancestry trios, 2,431 European ancestry controls	609 European ancestry trios, 2,322 European ancestry cases, 2,987 European ancestry controls	9q33.1	DBC1	rs10984447-A	0.77	8E-6		1.17	[1.09-1.25]	Affymetrix [334923]	N
1515	chr9	121985847	121985848	rs28503451	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	9q33.1	Intergenic	rs28503451-T	0.315	4E-11	(MTAG)	0.0117	[0.0082-0.0152] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1515	chr9	121987543	121987544	rs7867310	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	9q33.1		rs7867310-A	0.5246	2E-14	(conditional-joint)	0.0107	[0.008-0.0134] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1515	chr9	121992760	121992761	rs139359241	33852427	Wittekind DA	2021-04-01	Eur J Endocrinol	Genome-wide association and transcriptome analysis suggests total serum ghrelin to be linked with GFRAL.	ghrelin levels	1,501 individuals	NA	9q33.1	BRINP1	rs139359241-A	NR	7E-8		0.36	[0.24-0.5] unit decrease	Affymetrix [9868623] (imputed)	N
1515	chr9	121996944	121996945	rs748525584	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference	1,254 whole genome sequenced European ancestry individuals, 3,074 whole genome sequenced individuals, 29,716 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 701 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,050 Mylopotamos (founder/genetic isolate) individuals, 883 Pomak (founder/genetic isolate) individuals	205,909 European ancestry individuals	9q33.1	BRINP1	rs748525584-T	0.0024	1E-6		0.8982	[0.53-1.26] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1516	chr9	122039563	122039564	rs77936935	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Coffee consumption	335,909 European ancestry individuals	39,924 European ancestry individuals	9q33.1	BRINP1	rs77936935-G	0.9707	5E-6		0.0199	[0.011-0.029] unit increase	Affymetrix [~ 7740000] (imputed)	N
1516	chr9	122046874	122046875	rs1221148	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	9q33.1		rs1221148-C	0.587	7E-11		0.013	[0.0091-0.0169] unit increase	Affymetrix [up to 90000000] (imputed)	N
1516	chr9	122059708	122059709	rs4837628	20070850	Edwards TL	2010-01-13	Ann Hum Genet	Genome-wide association study confirms SNPs in SNCA and the MAPT region as common risk factors for Parkinson disease.	Parkinson's disease	1,752 European ancestry cases, 1,745 European ancestry controls	NA	9q33.1	DBC1	rs4837628-A	NR	1E-6		1.27	[1.15-1.39]	Illumina [495715] (imputed)	N
1516	chr9	122061947	122061948	rs4837631	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	9q33.1		rs4837631-C	0.55	2E-11		0.008	[0.006-0.01] unit increase	NR [NR] (imputed)	N
1516	chr9	122061947	122061948	rs4837631	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	9q33.1	BRINP1	rs4837631-T	0.4517	7E-9		0.012634879	[0.0084-0.0169] unit decrease	Affymetrix [11514654] (imputed)	N
1516	chr9	122061947	122061948	rs4837631	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	9q33.1	NR	rs4837631-T	0.446	1E-11		0.00733822	[0.0052-0.0095] unit decrease	NR [9732723] (imputed)	N
1516	chr9	122061947	122061948	rs4837631	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	9q33.1	NR	rs4837631-T	0.446	2E-9		0.015357429	[0.01-0.02] unit decrease	NR [~ 10000000] (imputed)	N
1516	chr9	122061947	122061948	rs4837631	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	9q33.1		rs4837631-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1516	chr9	122117732	122117733	rs12377833	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 8, orbital inclination due to vertical and horizontal position of exocanthion)	2,187 European ancestry individuals	NA	9q33.1	NR	rs12377833-G	0.2932	3E-6		0.1565	[0.091-0.222] unit decrease	Illumina [34985077] (imputed)	N
1516	chr9	122125353	122125354	rs942516	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	9q33.1	DBC1	rs942516-A	0.148	5E-6		1.07412	[1.04-1.1]	NR [9372253] (imputed)	N
1516	chr9	122144827	122144828	rs6478400	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels	18,590 European ancestry individuals	NA	9q33.1		rs6478400-?	NR	8E-6		0.06	[0.035-0.085] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1517	chr9	122165101	122165102	rs17635778	31409800	Pazoki R	2019-08-13	Nat Commun	GWAS for urinary sodium and potassium excretion highlights pathways shared with cardiovascular traits.	Urinary sodium excretion	446,237 European ancestry individuals	7,612 African ancestry individuals, 10,095 South Asian ancestry individuals	9q33.1	BRINP1	rs17635778-C	0.82607	3E-9	(EA)	0.00974302	[0.0065-0.013] unit increase	Affymetrix [~ 8800000] (imputed)	N
1517	chr9	122174361	122174362	rs1331621	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar I disorder	14,879 European ancestry cases, 31,358 European ancestry controls	NA	9q33.1	NR	rs1331621-T	0.351	4E-7		1.08318		NR [9372253] (imputed)	N
1517	chr9	122188603	122188604	rs10739537	30166627	Massey J	2018-08-31	Pharmacogenomics J	Genome-wide association study of response to tumour necrosis factor inhibitor therapy in rheumatoid arthritis.	Response to TNF inhibitor in rheumatoid arthritis (change in swollen 28-joint count)	551 European ancestry individuals treated with adalimumab, 619 European ancestry individuals treated with etanercept, 434 European ancestry individuals treated with infliximab, 119 European ancestry individuals treated with other TNF inhibitors	NA	9q33.1	BRINP1, LINC01613	rs10739537-?		9E-8	(Adalimumab)	0.21	[0.13-0.29] unit decrease	Affymetrix, Illumina [9814288] (imputed)	N
1517	chr9	122196739	122196740	rs2416699	28272467	Heilmann-Heimbach S	2017-03-08	Nat Commun	Meta-analysis identifies novel risk loci and yields systematic insights into the biology of male-pattern baldness.	Male-pattern baldness	10,846 European ancestry cases, 11,672 European ancestry controls	NA	9q33.1		rs2416699-T	0.13	5E-10		0.18	[0.12-0.24] unit increase	Affymetrix, Illumina [8004650] (imputed)	N
1517	chr9	122199202	122199203	rs1331623	25133637	Scannell Bryan M	2014-08-18	PLoS One	Genome-wide association studies and heritability estimates of body mass index related phenotypes in Bangladeshi adults.	Height	2,754 Bangladeshi ancestry females, 2,590 Bangladeshi ancestry males	NA	9q33.1	DBC1, MIR147A	rs1331623-A	0.337	8E-7	(females)	0.008	[0.0041-0.0119] m increase	Illumina [1208102] (imputed)	N
1517	chr9	122223957	122223958	rs17637172	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	9q33.1	DBC1, MIR147A	rs17637172-G	0.01	2E-7	(EA)	0.7987	[0.5-1.1] unit increase	Illumina [~ 9000000] (imputed)	N
1517	chr9	122233589	122233590	rs190548934	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	9q33.1	DBC1, MIR147A	rs190548934-T	0.01	8E-7		0.7325	[0.45-1.02] unit increase	Illumina [~ 9000000] (imputed)	N
1517	chr9	122258576	122258577	rs10984561	22424883	Imboden M	2012-03-15	J Allergy Clin Immunol	Genome-wide association study of lung function decline in adults with and without asthma.	Pulmonary function decline	1,441 European ancestry asthma cases, 2,677 European ancestry controls	1,160 European ancestry asthma cases, 10,858 European ancestry controls	9q33.1	intergenic	rs10984561-?	NR	3E-6	(FEV1/FVC decline in asthmatics)	0.8452	[0.49-1.2] unit decrease	Illumina [~ 2500000] (imputed)	N
1517	chr9	122280211	122280212	rs10818329	31626034	Thomsen H	2019-10-11	Melanoma Res	Genome-wide study on uveal melanoma patients finds association to DNA repair gene TDP1.	Uveal melanoma (TNM stage 1 or 2)	330 European ancestry cases, 5,199 European ancestry controls	NA	9q33.1		rs10818329-G	0.29	2E-6		1.49		Illumina [10258281] (imputed)	N
1517	chr9	122289186	122289187	rs1009470	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	9q33.1		rs1009470-T	0.4414	1E-9		0.0086	[0.0059-0.0113] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1517	chr9	122289186	122289187	rs1009470	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	9q33.1	Intergenic	rs1009470-T	0.4414	3E-10	(MTAG)	0.0083	[0.0058-0.0108] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1518	chr9	122304581	122304582	rs17578200	31324189	Kim W	2019-07-19	Respir Res	DSP variants may be associated with longitudinal change in quantitative emphysema.	Emphysema annual change measurement in smokers (adjusted lung density)	4,427 European ancestry individuals, 1,158 African American individuals	NA	9q33.1	BRINP1	rs17578200-G	NR	7E-6		0.135	[0.076-0.194] unit decrease	Illumina [NR] (imputed)	N
1518	chr9	122304581	122304582	rs17578200	31324189	Kim W	2019-07-19	Respir Res	DSP variants may be associated with longitudinal change in quantitative emphysema.	Emphysema annual change measurement in smokers (adjusted lung density)	4,427 European ancestry individuals, 1,158 African American individuals	NA	9q33.1	BRINP1	rs17578200-G	0.135	7E-6	(EA)	0.139	[0.078-0.2] unit decrease	Illumina [NR] (imputed)	N
1518	chr9	122394118	122394119	rs17580614	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	9q33.1	Intergenic	rs17580614-A	0.7583	3E-8	(MTAG)	0.0108	[0.0071-0.0145] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1518	chr9	122394118	122394119	rs17580614	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	9q33.1	Intergenic	rs17580614-A	0.7672	1E-8	(MTAG)	0.0089	[0.0058-0.012] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1519	chr9	122439146	122439147	rs10984635	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (unclassified genus belonging to family Ruminococcaceae)	1,068 Japanese ancestry individuals	NA	9q33.1	intergenic	rs10984635-G	0.41	3E-7	(male)	0.0946	[0.059-0.13] unit increase	Illumina [6380737] (imputed)	N
1519	chr9	122484431	122484432	rs17386987	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	9q33.1	NR	rs17386987-?	NR	7E-33				Affymetrix [NR]	N
1519	chr9	122489020	122489021	rs567805973	32546850	Campos AI	2020-06-16	Sci Rep	Genetic aetiology of self-harm ideation and behaviour.	Deliberate self-harm	6,872 European ancestry cases, 150,008 European ancestry controls	NA	9q33.1	NR	rs567805973-C	NR	2E-8		0.046	NR unit decrease	Affymetrix [NR] (imputed)	N
1519	chr9	122500128	122500129	rs17478568	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Lateral occipital cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	9q33.1	NR	rs17478568-?		9E-6				Illumina [4322238] (imputed)	N
1519	chr9	122516318	122516319	rs149598712	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	9q33.1	LINC01613	rs149598712-T	0.0022	2E-6		0.6587	[0.39-0.93] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1519	chr9	122549085	122549086	rs1360695	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	9q33.1	NR	rs1360695-A	NR	3E-7		1.06	[NR]	Illumina [7158791] (imputed)	N
1520	chr9	122552981	122552982	rs10984700	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	9q33.1	Intergenic	rs10984700-C	0.7626	1E-8		0.0131	[0.0086-0.0176] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1520	chr9	122556934	122556935	rs117119938	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 217)	19,670 European ancestry individuals	NA	9q33.1		rs117119938-?	NR	9E-9				NR [9705931] (imputed)	N
1520	chr9	122568613	122568614	rs2781093	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder	29,475 European ancestry cases, 63,482 European ancestry controls	NA	9q33.2	NR	rs2781093-G	0.723417	9E-6		1.0695187	[1.04-1.1]	Affymetrix [7791636] (imputed)	N
1520	chr9	122572895	122572896	rs944961	28090565	Tsai EA	2016-05-26	Cell Mol Gastroenterol Hepatol	THBS2 Is a Candidate Modifier of Liver Disease Severity in Alagille Syndrome.	Liver disease severity in Alagille syndrome	97 European ancestry mild cases, 64 European ancestry severe cases	NA	9q33.2	NR	rs944961-?	NR	2E-6				Illumina [579677]	N
1520	chr9	122576275	122576276	rs75970138	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interferon gamma-induced protein 10 levels	3,685 Finnish ancestry individuals	NA	9q33.2	NR	rs75970138-G		2E-6		0.485	[0.28-0.69] SD units increase	NR [10700000] (imputed)	N
1520	chr9	122608691	122608692	rs2225659	24342994	Lencz T	2014-02-01	Mol Psychiatry	Molecular genetic evidence for overlap between general cognitive ability and risk for schizophrenia: a report from the Cognitive Genomics consorTium (COGENT).	General cognitive ability	4,896 European ancestry individuals	NR	9q33.2	NR	rs2225659-?	NR	5E-6		0.1046	unit decrease	Affymetrix, Illumina [up to 1078289] (imputed)	N
1520	chr9	122629069	122629070	rs10984732	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	9q33.2		rs10984732-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1520	chr9	122651783	122651784	rs10984756	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	9q33.2	NA	rs10984756-C	0.9051	4E-10		0.0176	[0.012-0.023] unit decrease	NR [~ 27400000] (imputed)	N
1520	chr9	122651992	122651993	rs10116891	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	9q33.2	RP11-295D22.1	rs10116891-G	0.89905	6E-9		0.0135983	[0.009-0.0182] unit decrease	Affymetrix [12370749]	N
1520	chr9	122652869	122652870	rs11794984	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9q33.2		rs11794984-?	NR	1E-12				NR [~ 8900000] (imputed)	N
1520	chr9	122655282	122655283	rs60393230	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	9q33.2	NR	rs60393230-A	NR	4E-8		5.502	z score decrease	Affymetrix [10847151] (imputed)	N
1520	chr9	122655282	122655283	rs60393230	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	9q33.2	NR	rs60393230-A	NR	4E-9		0.01397	[0.0093-0.0186] unit decrease	Affymetrix [10847151] (imputed)	N
1520	chr9	122660053	122660054	rs12553064	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	9q33.2	Intergenic	rs12553064-A	0.6059	7E-9	(MTAG)	0.0078	[0.0053-0.0103] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1520	chr9	122660714	122660715	rs952191	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	9q33.2	NR	rs952191-?	NR	1E-6		4.84	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1520	chr9	122662719	122662720	rs9775587	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	9q33.2		rs9775587-?	NR	1E-12		0.0197	unit increase	NR [NR]	N
1520	chr9	122663011	122663012	rs9775606	31168069	Ward J	2019-06-05	Mol Psychiatry	The genomic basis of mood instability: identification of 46 loci in 363,705 UK Biobank participants, genetic correlation with psychiatric disorders, and association with gene expression and function.	Mood instability	157,039 European ancestry cases, 206,666 European ancestry controls	NA	9q33.2	intergenic	rs9775606-?	NR	1E-8		0.00666083	[0.0044-0.0089] unit decrease	Affymetrix [NR] (imputed)	N
1520	chr9	122663465	122663466	rs4836789	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Experiencing mood swings	373,733 European ancestry individuals	NA	9q33.2	NR	rs4836789-T	0.402872	1E-8		5.71	z score decrease	NR [10847151] (imputed)	N
1520	chr9	122664467	122664468	rs10818400	31926635	Coleman JRI	2019-11-01	Biol Psychiatry	The Genetics of the Mood Disorder Spectrum: Genome-wide Association Analyses of More Than 185,000 Cases and 439,000 Controls.	Bipolar disorder or major depressive disorder	164,933 European ancestry major depressive disorder cases, 20,352 European ancestry bipolar disorder cases, 439,741 European ancestry controls	NA	9q33.2	NR	rs10818400-G	NR	1E-8		1.0204082		NR [NR] (imputed)	N
1520	chr9	122664467	122664468	rs10818400	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	9q33.2	NR	rs10818400-G	0.605687587251465	1E-12		0.008432748	[0.0061-0.0108] unit increase	NR [NR]	N
1520	chr9	122664467	122664468	rs10818400	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	9q33.2	NR	rs10818400-G	0.605687587251465	2E-13		0.011010994	[0.0081-0.014] unit increase	NR [NR]	N
1520	chr9	122664467	122664468	rs10818400	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	9q33.2	NR	rs10818400-G	0.605687587251465	1E-12		0.008991932	[0.0065-0.0115] unit increase	NR [NR]	N
1520	chr9	122664467	122664468	rs10818400	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	9q33.2	NR	rs10818400-G	0.605687587251465	2E-13		0.0070496965	[0.0052-0.0089] unit increase	NR [NR]	N
1520	chr9	122668047	122668048	rs1360692	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	9q33.2	NR	rs1360692-T	0.604426454049253	3E-13		0.0068362597	[0.005-0.0087] unit increase	NR [NR]	N
1520	chr9	122674411	122674412	rs1333904	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	9q33.2	Intergenic	rs1333904-T	0.6087	2E-9	(MTAG)	0.0111	[0.0076-0.0146] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1520	chr9	122674411	122674412	rs1333904	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	9q33.2	Intergenic	rs1333904-T	0.6079	2E-10	(MTAG)	0.0107	[0.0074-0.014] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1520	chr9	122674411	122674412	rs1333904	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	9q33.2	Intergenic	rs1333904-T	0.594	6E-9	(MTAG)	0.0136	[0.0091-0.0181] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1520	chr9	122676272	122676273	rs7873013	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Angina pectoris	30,025 European ancestry cases, 440,906 European ancestry controls, 14,007 East Asian ancestry cases, 145,158 East Asian ancestry controls	NA	9q33.2		rs7873013-T	NR	2E-9		0.0506	[0.034-0.067] unit increase	Affymetrix, Illumina [25842036] (imputed)	N
1521	chr9	122692798	122692799	rs5018269	29970889	Day FR	2018-07-03	Nat Commun	Elucidating the genetic basis of social interaction and isolation.	Regular attendance at a gym or sports club	135,060 European ancestry cases, 317,242 European ancestry controls	NA	9q33.2	NA	rs5018269-A	0.653467	4E-8		0.00551969	[0.0035-0.0075] unit decrease	NR [NR] (imputed)	N
1521	chr9	122710348	122710349	rs11999958	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota alpha diversity (PD_whole_tree index)	1,068 Japanese ancestry individuals	NA	9q33.2	intergenic	rs11999958-A	0.02	9E-6	(male)	3.47	[1.96-4.98] unit increase	Illumina [6380737] (imputed)	N
1521	chr9	122775355	122775356	rs72751336	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	9q33.2	Intergenic	rs72751336-A	0.8147	4E-8		0.016	[0.01-0.022] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1521	chr9	122781253	122781254	rs2416745	24839885	Benke KS	2014-02-19	J Am Acad Child Adolesc Psychiatry	A genome-wide association meta-analysis of preschool internalizing problems.	Preschool internalizing problems	3,121 European ancestry individuals, 1,475 children from 1,031 families	NA	9q33.2	intergenic	rs2416745-T	0.1766	1E-6		0.14	[0.084-0.2] unit increase	Affymetrix, Illumina [2403520] (imputed)	N
1521	chr9	122782469	122782470	rs10984807	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	9q33.2	Intergenic	rs10984807-T	0.8066	1E-9	(MTAG)	0.0127	[0.0086-0.0168] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1521	chr9	122782897	122782898	rs59620360	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip	15 Asian ancestry cases, 13 European ancestry cases, 15 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	9q33.2	NR	rs59620360-?	NR	3E-7		5.54	[4.09-7.51]	Illumina [539000] (imputed)	N
1522	chr9	122817819	122817820	rs12236015	30552317	Guo W	2018-12-14	Transl Psychiatry	Exploratory genome-wide association analysis of response to ketamine and a polygenic analysis of response to scopolamine in depression.	Response to ketamine in bipolar disorder or major depression (dissociation effects)	90 European ancestry individuals	NA	9q33.2	Intergenic	rs12236015-C	0.833	3E-6		13.9838	[8.54-19.43] unit decrease	Illumina [~ 6000000] (imputed)	N
1522	chr9	122855413	122855414	rs12003361	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	9q33.2	RP11-360A18.1, MIR147	rs12003361-?	NR	1E-8		0.054	[0.036-0.072] unit increase	Illumina [34656550] (imputed)	N
1522	chr9	122855413	122855414	rs12003361	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	9q33.2	RP11-360A18.1, MIR147	rs12003361-?	NR	1E-6	(AA)	0.05449544	[0.032-0.077] unit increase	Illumina [34656550] (imputed)	N
1522	chr9	122861296	122861297	rs16909449	20339536	Barber MJ	2010-03-22	PLoS One	Genome-wide association of lipid-lowering response to statins in combined study populations.	Response to statin therapy	3,928 European ancestry individuals	NA	9q33.2	MIRN147, CDK5RAP2, MEGF9	rs16909449-C	0.25	1E-6	(Triglyceride, sum)			Illumina [~ 2500000] (imputed)	N
1522	chr9	122877304	122877305	rs10984843	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	9q33.2	MEGF9	rs10984843-?	NR	8E-6	(inositol)	1.5846131	[0.89-2.28] unit increase	Affymetrix [at least 2500000] (imputed)	N
1523	chr9	123050796	123050797	rs887807	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Photic sneeze reflex	32,446 European ancestry cases, 67,249 European ancestry controls	NA	9q33.2	DBC1, CDK5RAP2	rs887807-?	NR	8E-34		1.326	[1.266-1.389]	Illumina [13729857] (imputed)	N
1523	chr9	123056636	123056637	rs4837752	19875103	Aberg K	2009-10-27	Biol Psychiatry	Genomewide association study of movement-related adverse antipsychotic effects.	Response to antipsychotic therapy (extrapyramidal side effects)	421 European ancestry schizophrenia cases, 214 African American schizophrenia cases, 103 schizophrenia cases	NA	9q33.2	intergenic	rs4837752-?	NR	6E-6	(SAS)			Affymetrix [492000]	N
1524	chr9	123096245	123096246	rs200549	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	9q33.2	NR	rs200549-?	NR	1E-6				Affymetrix [NR]	N
1524	chr9	123129971	123129972	rs12006110	27611488	Almoguera B	2016-09-09	Am J Respir Crit Care Med	Identification of Four Novel Loci in Asthma in European American and African American Populations.	Asthma	819 African American non-allergic asthma cases, 2,218 African American allergic asthma cases 4,360 African American controls, 808 European American non-allergic asthma cases, 1,464 European American allergic asthma cases, 11,975 European American controls	NA	9q33.2	CDK5RAP2	rs12006110-?		3E-6	(AA)	0.223	[0.068-0.378] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1524	chr9	123162665	123162666	rs12379034	24782177	Jiang L	2014-05-01	Arthritis Rheumatol	Novel risk loci for rheumatoid arthritis in Han Chinese and congruence with risk variants in Europeans.	Rheumatoid arthritis	433 Han Chinese ancestry ACPA positive cases, 519 Han Chinese ancestry ACPA negative cases, 943 Han Chinese ancestry controls	1,032 Han Chinese ancestry ACPA positive cases, 1,100 Han Chinese ancestry ACPA negative cases, 2,553 Han Chinese ancestry controls	9q33.2	CDK5RAP2	rs12379034-C	0.25	1E-16	(ACPA+ cases vs. all controls)	1.489	[NR]	Affymetrix [3441843] (imputed)	N
1524	chr9	123162665	123162666	rs12379034	24782177	Jiang L	2014-05-01	Arthritis Rheumatol	Novel risk loci for rheumatoid arthritis in Han Chinese and congruence with risk variants in Europeans.	Rheumatoid arthritis	433 Han Chinese ancestry ACPA positive cases, 519 Han Chinese ancestry ACPA negative cases, 943 Han Chinese ancestry controls	1,032 Han Chinese ancestry ACPA positive cases, 1,100 Han Chinese ancestry ACPA negative cases, 2,553 Han Chinese ancestry controls	9q33.2	CDK5RAP2	rs12379034-C	0.25	1E-12	(all cases vs. all controls)	1.336	[NR]	Affymetrix [3441843] (imputed)	N
1524	chr9	123166463	123166464	rs538618954	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	9q33.2	CDK5RAP2	rs538618954-T	0.0011	5E-6		1.3183	[0.75-1.88] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1525	chr9	123333083	123333084	rs13301996	34165540	Justice AE	2021-06-24	Hum Mol Genet	Genome-wide association study of body fat distribution traits in Hispanics/Latinos from the HCHS/SOL.	Waist-to-hip ratio adjusted for body mass index	7,272 Hispanic or Latin American females, 5,200 Hispanic or Latin American males	up to 12,341 Hispanic or Latin American individuals, 8,913 African American females, 758 African American males, 4,795 European ancestry females, 4,281 European ancestry males	9q33.2		rs13301996-T	0.809	1E-6		0.003	[0.001-0.005] unit increase	Illumina [NR] (imputed)	N
1526	chr9	123351120	123351121	rs7861226	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	9q33.2	NR	rs7861226-A	NR	2E-9		0.0159	[0.011-0.021] unit increase	Affymetrix [9000000] (imputed)	N
1526	chr9	123358261	123358262	rs2416759	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	9q33.2	MEGF9	rs2416759-G	0.302761	3E-8		0.0120803	[0.0078-0.0163] unit decrease	Affymetrix [NR] (imputed)	N
1526	chr9	123358261	123358262	rs2416759	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	9q33.2		rs2416759-A	0.6986	1E-9		0.0093	[0.0064-0.0122] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1526	chr9	123358261	123358262	rs2416759	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	9q33.2	Intergenic	rs2416759-A	0.6986	5E-9	(MTAG)	0.0083	[0.0056-0.011] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1526	chr9	123362038	123362039	rs4836827	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	9q33.2		rs4836827-T	0.3	9E-9		5.75	z score increase	Affymetrix [9061022] (imputed)	N
1526	chr9	123367551	123367552	rs118083394	30073298	Schellevis RL	2018-08-02	JAMA Ophthalmol	Role of the Complement System in Chronic Central Serous Chorioretinopathy: A Genome-Wide Association Study.	Chronic central serous retinopathy	521 European ancestry cases, 3,577 European ancestry controls		9q33.2	MEGF6	rs118083394-?	NR	6E-7		8.36	[3.67-19.06]	Illumina [11526719] (imputed)	N
1526	chr9	123370821	123370822	rs1359328	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	9q33.2	MEGF9	rs1359328-?	NR	4E-9		0.017180644	[0.011-0.023] unit decrease	Illumina [27896057] (imputed)	N
1526	chr9	123375109	123375110	rs1324472	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	9q33.2		rs1324472-T	NR	2E-10		0.0139	[0.0096-0.0182] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
1526	chr9	123375588	123375589	rs7861679	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	9q33.2		rs7861679-T	NR	7E-9		0.0124	[0.0083-0.0165] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
1526	chr9	123375588	123375589	rs7861679	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	9q33.2	MEGF9	rs7861679-C	NR	4E-10		0.019231	[0.013-0.025] unit increase	Affymetrix [321016] (imputed)	N
1526	chr9	123393765	123393765	rs35207016	34118634	Chu X	2021-05-27	J Psychiatr Res	Maternal smoking during pregnancy and risks to depression and anxiety in offspring: An observational study and genome-wide gene-environment interaction analysis in UK biobank cohort.	Anxiety x maternal smoking during pregnancy interaction	5,584 cases, 9,801 controls	NA	9q33.2	MEGF9	rs35207016-?	NR	1E-7	(Dominant model)			Affymetrix [NR] (imputed)	N
1526	chr9	123393765	123393765	rs35207016	34118634	Chu X	2021-05-27	J Psychiatr Res	Maternal smoking during pregnancy and risks to depression and anxiety in offspring: An observational study and genome-wide gene-environment interaction analysis in UK biobank cohort.	Anxiety	5,584 cases, 9,801 controls	NA	9q33.2	MEGF9	rs35207016-?	NR	5E-7	(Dominant model)			Affymetrix [NR] (imputed)	N
1526	chr9	123394614	123394615	rs34449214	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	9q33.2	MEGF9	rs34449214-G	0.705782	4E-14		0.018740302	[0.014-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1526	chr9	123394614	123394615	rs34449214	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	9q33.2	MEGF9	rs34449214-G	0.705783	7E-13		0.017829405	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1526	chr9	123394614	123394615	rs34449214	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	9q33.2	MEGF9	rs34449214-G	0.70577	7E-15		0.019238215	[0.014-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1526	chr9	123394614	123394615	rs34449214	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	9q33.2	MEGF9	rs34449214-G	0.705776	3E-14		0.018791687	[0.014-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1526	chr9	123400420	123400421	rs10984970	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	9q33.2	MEGF9	rs10984970-G	0.9287197	3E-6		1.1137654	[1.06-1.17]	Illumina [10439017] (imputed)	N
1526	chr9	123411358	123411358	rs146357103	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	9q33.2	MEGF9	rs146357103-CT	NR	2E-10		0.0353343	[0.025-0.046] unit increase	Affymetrix [321016] (imputed)	N
1527	chr9	123483620	123483621	rs4837793	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9q33.2		rs4837793-?	NR	2E-23				NR [~ 8900000] (imputed)	N
1527	chr9	123484114	123484115	rs10985000	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	9q33.2		rs10985000-G	NR	2E-23		0.0134	[0.011-0.016] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1527	chr9	123494061	123494062	rs7044106	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	9q33.2	C5, FBXW2	rs7044106-C	0.2348	6E-9	(EA, women)	0.0387	[0.026-0.052] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1527	chr9	123497644	123497645	rs2900177	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	9q33.2		rs2900177-T	0.697043	4E-13		0.0177055	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1527	chr9	123497644	123497645	rs2900177	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	9q33.2	NR	rs2900177-T	0.696797	2E-15		0.015954	[0.012-0.02] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1527	chr9	123507854	123507855	rs4837794	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	9q33.2	NR	rs4837794-T	0.33113	2E-22		0.00786694	[0.0061-0.0096] unit increase	Affymetrix [16582909] (imputed)	N
1527	chr9	123507854	123507855	rs4837794	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	9q33.2	NR	rs4837794-T	0.331585	1E-16		0.0103931	[0.0078-0.013] unit increase	Affymetrix [16585854] (imputed)	N
1527	chr9	123507854	123507855	rs4837794	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	9q33.2	NR	rs4837794-T	0.33113	9E-19		0.00822181	[0.0063-0.0102] unit increase	Affymetrix [16582965] (imputed)	N
1527	chr9	123507854	123507855	rs4837794	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	9q33.2	NR	rs4837794-T	0.331585	5E-16		0.0118695	[0.0089-0.0148] unit increase	Affymetrix [16585866] (imputed)	N
1527	chr9	123516414	123516414	rs35310240	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	9q33.2		rs35310240-CT	NR	1E-18		0.0171	[0.013-0.021] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1527	chr9	123550026	123550027	rs7026635	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9q33.2	NR	rs7026635-G	0.2526	9E-9	(PSMD5)	0.01161	NR unit increase	Illumina [1671387] (imputed)	N
1527	chr9	123583191	123583192	rs1060817	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q33.2	NR	rs1060817-G	0.54061	9E-15				Affymetrix, Illumina [24588908] (imputed)	N
1527	chr9	123586736	123586737	rs10760117	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Systolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	9q33.2	PSMD5	rs10760117-T	0.415	6E-10		0.283	[0.19-0.37] mm Hg increase	Affymetrix, Illumina, Perlegen [128272]	N
1527	chr9	123594802	123594803	rs13299616	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	9q33.2	PSMD5, PSMD5-AS1	rs13299616-T	NR	6E-9		0.0166451	[0.011-0.022] unit increase	Affymetrix [321016] (imputed)	N
1527	chr9	123594802	123594803	rs13299616	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Autoimmune traits	approximately 459,000 European ancestry individuals	NA	9q33.2		rs13299616-?	NR	1E-7				NR [~ 8900000] (imputed)	N
1528	chr9	123603898	123603899	rs62581708	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	9q33.2	PSMD5, PSMD5-AS1	rs62581708-C	NR	2E-9		0.0196948	[0.013-0.026] unit increase	Affymetrix [321016] (imputed)	N
1528	chr9	123626718	123626718	rs11400571	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	9q33.2		rs11400571-CA	0.545021	2E-8		0.0115122	[0.0075-0.0155] unit decrease	Illumina [13479295] (imputed)	N
1528	chr9	123629723	123629724	rs10985068	29422769	Shah RL	2018-02-05	Mol Vis	A genome-wide association study of corneal astigmatism: The CREAM Consortium.	Corneal astigmatism	9,293 European ancestry cases, 12,957 European ancestry controls, 4,349 Asian ancestry cases, 4,771 Asian ancestry controls	NA	9q33.2	PHF19	rs10985068-C	0.12	6E-6		1.13	[1.07-1.19]	NR [~ 55000000] (imputed)	N
1528	chr9	123631224	123631225	rs7847628	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	High density lipoprotein cholesterol levels	70,657 Japanese ancestry individuals	NA	9q33.2	PHF19	rs7847628-?	NR	2E-8		0.03203	[0.021-0.043] unit decrease novel	Illumina [6108953] (imputed)	N
1528	chr9	123631224	123631225	rs7847628	27680694	Horikoshi M	2016-10-13	Nature	Genome-wide associations for birth weight and correlations with adult disease.	Birth weight	133,903 European ancestry individuals, 6,635 African American individuals, 420 Turkish ancestry individuals, 365 Moroccan ancestry individuals, 395 Surinamese ancestry individuals, 840 Chinese ancestry individuals.	9,799 European ancestry individuals, 1,449 Filipino ancestry individuals.	9q33.2	PHF19	rs7847628-G	0.67	5E-9		0.0229	[0.015-0.031] unit increase	Affymetrix, Illumina [at least 22434434] (imputed)	N
1528	chr9	123632828	123632829	rs4836833	31681408	Yang XL	2019-10-11	Front Genet	Three Novel Loci for Infant Head Circumference Identified by a Joint Association Analysis.	Birth weight (MTAG)	up to 182,902 European ancestry individuals	NA	9q33.2	NR	rs4836833-A	0.67	2E-8		0.022675889	[0.015-0.031] unit increase	NR [1977400] (imputed)	N
1528	chr9	123633947	123633948	rs3933326	31097437	Plotnikov D	2019-05-16	Br J Ophthalmol	Association between birth weight and refractive error in adulthood: a Mendelian randomisation study.	Birth weight	188,039 European ancestry individuals	NA	9q33.2	NR	rs3933326-A	0.32	2E-8		0.02	[0.012-0.028] z score decrease	Affymetrix [up to 10400000] (imputed)	N
1528	chr9	123633947	123633948	rs3933326	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	9q33.2	PHF19	rs3933326-G	0.676066	2E-14		0.021331	[0.016-0.027] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1528	chr9	123636120	123636121	rs10985070	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	9q33.2	TRAF1-C5	rs10985070-A	NR	3E-9		0.0777433	[0.052-0.103] unit decrease	Illumina [8380626] (imputed)	N
1528	chr9	123636120	123636121	rs10985070	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	9q33.2	TRAF1-C5	rs10985070-A	0.57	2E-8	(EA)	0.08656	[0.056-0.117] unit decrease	Illumina [8380626] (imputed)	N
1528	chr9	123636120	123636121	rs10985070	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	9q33.2	TRAF1, C5	rs10985070-C	0.45	5E-11		1.08	[1.06-1.11]	Affymetrix, Illumina [up to 9739303] (imputed)	N
1528	chr9	123636120	123636121	rs10985070	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	9q33.2	TRAF1, C5	rs10985070-C	0.42	4E-9	(EA)	1.09	[1.06-1.12]	Affymetrix, Illumina [up to 9739303] (imputed)	N
1528	chr9	123640499	123640500	rs1953126	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Pulse pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	154,543 European ancestry individuals, 26,183 South Asian ancestry individuals	9q33.2	PHF19	rs1953126-T	0.331	2E-7		0.17	[0.11-0.23] unit increase	Illumina [247039]	N
1528	chr9	123640499	123640500	rs1953126	21383967	Zhernakova A	2011-02-24	PLoS Genet	Meta-analysis of genome-wide association studies in celiac disease and rheumatoid arthritis identifies fourteen non-HLA shared loci.	Celiac disease or Rheumatoid arthritis	4,533 European ancestry celiac disease cases, 5,539 European ancestry rheumatoid arthritis cases, 27,981 European ancestry controls	2,169 European ancestry celiac disease cases, 2,845 European ancestry rheumatoid arthritis cases, 7,199 European ancestry controls	9q33.2	TRAF1	rs1953126-T	NR	4E-11				Illumina [472854]	N
1528	chr9	123643426	123643426	rs59482735	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	9q33.2		rs59482735-TAA	NR	3E-8		0.0127	[0.0082-0.0172] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
1528	chr9	123643426	123643426	rs59482735	28139693	Hoffmann TJ	2017-01-31	Nat Commun	Genome-wide association study of prostate-specific antigen levels identifies novel loci independent of prostate cancer.	Prostate-specific antigen levels	28,503 European ancestry individuals	2,716 Latino individuals, 2,518 East Asian ancestry individuals, 1,585 African American individuals, 6,193 European ancestry individuals (later diagnosed with prostate cancer), 5,603 European ancestry individuals	9q33.2	PHF19	rs59482735-T	0.32	4E-9		0.0363711	[0.024-0.048] unit increase	Affymetrix [10109774] (imputed)	N
1528	chr9	123645759	123645760	rs7858209	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	9q33.2		rs7858209-A	NR	2E-23		0.0211	[0.017-0.025] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
1528	chr9	123648084	123648085	rs10818482	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	9q33.2	NR	rs10818482-G	0.569146	5E-14		0.014008	[0.01-0.018] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
1528	chr9	123650472	123650473	rs10818483	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	9q33.2	NR	rs10818483-T	0.3574	6E-10		1.039	[1.027-1.051]	Affymetrix [15688218] (imputed)	N
1528	chr9	123650533	123650534	rs10760123	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	9q33.2	PHF19, TRAF1	rs10760123-T	0.38	5E-9		1.032	[1.02-1.04]	Affymetrix, Illumina [8307659] (imputed)	N
1528	chr9	123651300	123651301	rs2072438	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	9q33.2	PHF19, TRAF1, C5	rs2072438-?		2E-11				Affymetrix, Illumina [NR] (imputed)	N
1528	chr9	123651300	123651301	rs2072438	24782177	Jiang L	2014-05-01	Arthritis Rheumatol	Novel risk loci for rheumatoid arthritis in Han Chinese and congruence with risk variants in Europeans.	Rheumatoid arthritis	952 Han Chinese ancestry cases, 943 Han Chinese ancestry controls	5,539 European ancestry cases, 20,169 European ancestry controls	9q33.2	TRAF1	rs2072438-T		3E-9		1.142	[NR]	Affymetrix [1497047] (imputed)	N
1528	chr9	123652379	123652380	rs6478484	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	9q33.2		rs6478484-?	NR	8E-14				NR [~ 8900000] (imputed)	N
1528	chr9	123652897	123652898	rs881375	19503088	Gregersen PK	2009-06-07	Nat Genet	REL, encoding a member of the NF-kappaB family of transcription factors, is a newly defined risk locus for rheumatoid arthritis.	Rheumatoid arthritis	2,418 European ancestry cases, 4,504 European ancestry controls	2,604 cases, 2,882 controls	9q33.2	TRAF1, C5	rs881375-?	NR	4E-8				Illumina [278502]	N
1528	chr9	123660256	123660259	rs577932181	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	9q33.2	TRAF1	rs577932181-C	0.578491	4E-9		0.013159499	[0.0088-0.0175] unit decrease	Affymetrix [93095623] (imputed)	N
1528	chr9	123662617	123662618	rs10760126	24532676	Kim K	2014-02-14	Ann Rheum Dis	High-density genotyping of immune loci in Koreans and Europeans identifies eight new rheumatoid arthritis risk loci.	Rheumatoid arthritis (ACPA-positive)	2,234 Korean ancestry cases, 7,065 Korean ancestry controls, 10,288 European ancestry cases, 35,502 European ancestry controls	NA	9q33.2	TRAF1	rs10760126-A	0.56	4E-12		1.1111112	[1.08-1.15]	Illumina [133816] (imputed)	N
1528	chr9	123666776	123666777	rs2241003	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	9q33.2	TRAF1	rs2241003-G	0.6014	4E-10		0.156	[0.11-0.2] mmHg decrease	Affymetrix [NR] (imputed)	N
1528	chr9	123668198	123668199	rs10435844	33310728	Ha E	2020-12-11	Ann Rheum Dis	Large-scale meta-analysis across East Asian and European populations updated genetic architecture and variant-driven biology of rheumatoid arthritis, identifying 11 novel susceptibility loci.	Rheumatoid arthritis	14,361 European ancestry cases, 43,923 European ancestry controls, 8,267 East Asian ancestry cases, 244,741 East Asian ancestry controls	NA	9q33.2		rs10435844-T	NR	1E-10		0.92	[0.9-0.95]	NR [13810676] (imputed)	N
1528	chr9	123675894	123675895	rs113495277	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	9q33.2	NR	rs113495277-G	NR	3E-15		0.0702	[0.053-0.088] unit decrease	Affymetrix [9000000] (imputed)	N
1528	chr9	123675894	123675895	rs113495277	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	9q33.2	NR	rs113495277-G	NR	3E-9		0.0502	[0.034-0.067] unit decrease	Affymetrix [9000000] (imputed)	N
1528	chr9	123676395	123676396	rs2416804	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	9q33.2		rs2416804-?	NR	7E-14				NR [~ 8900000] (imputed)	N
1528	chr9	123678128	123678129	rs2159778	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	9q33.2	TRAF1	rs2159778-G	0.355534	5E-9		1.0374209	[1.02476362827473-1.05023436583256]	NR [9572556] (imputed)	N
1528	chr9	123678128	123678129	rs2159778	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	9q33.2	NR	rs2159778-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
1528	chr9	123680067	123680068	rs10118357	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q33.2	NR	rs10118357-A	0.538442	2E-11				Affymetrix, Illumina [24649327] (imputed)	N
1528	chr9	123680067	123680068	rs10118357	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	9q33.2		rs10118357-?	NR	1E-7				NR [~ 8900000] (imputed)	N
1528	chr9	123683568	123683569	rs2269060	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis (ACPA-positive)	up to 9,585 European ancestry cases, up to 33,742 European ancestry controls	NA	9q33.2	TRAF1	rs2269060-?	NR	2E-8				Illumina [129464] (imputed)	N
1528	chr9	123683568	123683569	rs2269060	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis	up to 13,838 European ancestry cases, up to 33,742 European ancestry controls	NA	9q33.2	TRAF1	rs2269060-?	NR	4E-7				Illumina [129464] (imputed)	N
1528	chr9	123685091	123685092	rs1014530	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	9q33.2	TRAF1	rs1014530-C	0.5694	9E-11		0.02354796	[0.016-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
1528	chr9	123687833	123687834	rs1930781	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	9q33.2	TRAF1	rs1930781-G	0.35	1E-12				NR [> 9500000] (imputed)	N
1528	chr9	123689596	123689597	rs3761846	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	9q33.2	TRAF1	rs3761846-T	0.569047	1E-21		0.021308323	[0.017-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1528	chr9	123689596	123689597	rs3761846	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	9q33.2	NR	rs3761846-T	0.569525	6E-27		0.020501	[0.017-0.024] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1528	chr9	123690238	123690239	rs3761847	20453842	Stahl EA	2010-05-09	Nat Genet	Genome-wide association study meta-analysis identifies seven new rheumatoid arthritis risk loci.	Rheumatoid arthritis	5,539 European ancestry cases, 20,169 European ancestry controls	6,768 European ancestry cases, 8,806 European ancestry controls	9q33.2	TRAF1, C5	rs3761847-G	0.43	2E-7		1.13	[1.08-1.18]	Affymetrix, Illumina [~ 2716259] (imputed)	N
1528	chr9	123690238	123690239	rs3761847	17804836	Plenge RM	2007-09-05	N Engl J Med	TRAF1-C5 as a risk locus for rheumatoid arthritis--a genomewide study.	Rheumatoid arthritis	1,522 European ancestry cases, 1,850 European ancestry controls	1,053 European ancestry cases, 1,858 European ancestry controls	9q33.2	TRAF1-C5	rs3761847-G	0.41	4E-14		1.32	[1.23-1.42]	Illumina [297086]	N
1528	chr9	123691140	123691141	rs7028641	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	9q33.2	TRAF1	rs7028641-C	0.645572	3E-9		0.013747376	[0.0092-0.0183] unit increase	Affymetrix [93095623] (imputed)	N
1528	chr9	123691236	123691237	rs1930785	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q33.2	NR	rs1930785-G	0.560135	4E-26				Affymetrix, Illumina [23472807] (imputed)	N
1528	chr9	123693078	123693079	rs10739578	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	9q33.2	TRAF1	rs10739578-T	0.568403	3E-10		0.014038225	[0.0097-0.0184] unit increase	Affymetrix [93095623] (imputed)	N
1528	chr9	123695281	123695282	rs10739580	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis (ACPA-positive)	up to 9,585 European ancestry cases, up to 33,742 European ancestry controls	NA	9q33.2	TRAF1	rs10739580-G	0.4	2E-6		1.1152		Illumina [129464] (imputed)	N
1528	chr9	123706381	123706382	rs2900180	30891314	Saad MN	2019-01-18	J Adv Res	Studying the effects of haplotype partitioning methods on the RA-associated genomic results from the North American Rheumatoid Arthritis Consortium (NARAC) dataset.	Rheumatoid arthritis	868 European ancestry cases, 1,194 European ancestry controls	NA	9q33.2	TRAF1, C5	rs2900180-A	0.303	6E-9				NR [509413]	N
1528	chr9	123723533	123723534	rs7867876	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9q33.2		rs7867876-?	NR	6E-8				NR [~ 8900000] (imputed)	N
1528	chr9	123725925	123725926	rs17612	27670397	Reyes-Gibby CC	2016-09-27	Sci Rep	Genome-wide association study suggests common variants within RP11-634B7.4 gene influencing severe pre-treatment pain in head and neck cancer patients.	Pre-treatment pain in head and neck squamous cell carcinoma	148 European ancestry cases, 810 European ancestry controls	58 European ancestry cases, 352 European ancestry controls	9q33.2	NR	rs17612-?	0.26	5E-6		4.347826	[2.27-7.69]	Illumina [714494]	N
1529	chr9	123739559	123739560	rs41311933	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	9q33.2	C5	rs41311933-T	0.088	6E-7		0.057	[0.035-0.079] unit decrease	Affymetrix [7947838] (imputed)	N
1529	chr9	123742817	123742818	rs1035029	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C5;C6	5,338 Icelandic ancestry individuals	NA	9q33.2		rs1035029-G	0.3845	4E-9		0.0963709	[0.064-0.128] unit decrease	Illumina [7506463] (imputed)	N
1529	chr9	123742817	123742818	rs1035029	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C5	5,345 Icelandic ancestry individuals	NA	9q33.2		rs1035029-G	0.3845	2E-15		0.144002	[0.11-0.18] unit decrease	Illumina [7506463] (imputed)	N
1529	chr9	123742817	123742818	rs1035029	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	9q33.2	C5	rs1035029-A	0.6109375	2E-13	(C5, 2381_52_4)	0.18220149	[0.13-0.23] unit increase	Illumina [> 1000000] (imputed)	N
1529	chr9	123787998	123787999	rs17220750	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C5;C6	5,338 Icelandic ancestry individuals	NA	9q33.2		rs17220750-A	0.1101	1E-6		0.126073	[0.076-0.177] unit increase	Illumina [7506463] (imputed)	N
1529	chr9	123787998	123787999	rs17220750	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C5	5,345 Icelandic ancestry individuals	NA	9q33.2		rs17220750-A	0.1101	6E-6		0.129603	[0.073-0.186] unit increase	Illumina [7506463] (imputed)	N
1529	chr9	123839156	123839157	rs7856420	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	9q33.2	C5, CNTRL	rs7856420-G		6E-9		0.159	unit increase	Affymetrix [at least 2696785] (imputed)	N
1529	chr9	123850171	123850172	rs10985149	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GSN	5,343 Icelandic ancestry individuals	NA	9q33.2		rs10985149-T	0.009547	2E-26		0.935925	[0.76-1.11] unit decrease	Illumina [7506463] (imputed)	N
1530	chr9	123876029	123876030	rs3831035	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	9q33.2		rs3831035-T	NR	4E-8		0.0151	[0.0096-0.0206] unit increase	Affymetrix, Illumina [20536134] (imputed)	N
1530	chr9	123914873	123914874	rs9408926	22610502	Kennedy RB	2012-05-19	Hum Genet	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IFN-alpha)	Up to 512 European ancestry individuals, up to 199 African American individuals	NA	9q33.2	CEP110	rs9408926-A		4E-8	(AA)			Illumina [NR]	N
1530	chr9	123951916	123951917	rs9408928	22610502	Kennedy RB	2012-05-19	Hum Genet	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IFN-alpha)	Up to 512 European ancestry individuals, up to 199 African American individuals	NA	9q33.2	RAB14	rs9408928-G		4E-9	(AA)			Illumina [NR]	N
1530	chr9	123989013	123989014	rs10760158	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Pulse pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	9q33.2	PHF19	rs10760158-G	0.479881745	3E-6		0.1479	[0.086-0.21] unit decrease	Affymetrix [~ 9800000] (imputed)	N
1531	chr9	124009013	124009014	rs76331566	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	9q33.2	GSN	rs76331566-C	0.96875	5E-9	(GSN, 4775_34_3)	0.39763516	[0.26-0.53] unit increase	Illumina [> 1000000] (imputed)	N
1531	chr9	124039870	124039871	rs4837827	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	9q33.2	NR	rs4837827-T	0.460158	3E-10		0.011681	[0.008-0.0153] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
1531	chr9	124049955	124049956	rs4836845	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q33.2	NR	rs4836845-C	0.477477	6E-10				Affymetrix, Illumina [24653286] (imputed)	N
1531	chr9	124055975	124055977	rs150969748	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	9q33.2		rs150969748-C	NR	2E-10		0.015	[0.01-0.02] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
1531	chr9	124060303	124060304	rs3761856	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	9q33.2	NR	rs3761856-T	0.424863	5E-11		0.012279	[0.0086-0.0159] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
1531	chr9	124093996	124093997	rs1560980	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	9q33.2		rs1560980-C	NR	5E-16		0.0468	[0.035-0.058] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
1531	chr9	124098534	124098535	rs767770	20889312	Wang KS	2010-10-01	Schizophr Res	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	9q33.2	NR	rs767770-?	NR	6E-6		1.7173	[NR]	Affymetrix [722112]	N
1531	chr9	124099835	124099836	rs75473010	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	9q33.2	AL161784.1	rs75473010-T	0.041175	6E-9		0.0323718	[0.022-0.043] unit increase	Affymetrix [93095623] (imputed)	N
1533	chr9	124279101	124279102	rs72762175	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9q33.2		rs72762175-?	NR	3E-14				NR [~ 8900000] (imputed)	N
1533	chr9	124286452	124286453	rs62576054	33567813	Mateos MK	2021-02-11	Haematologica	Methotrexate-related central neurotoxicity: clinical characteristics, risk factors and genome-wide association study in children treated for acute lymphoblastic leukemia.	Methotrexate-related central neurotoxicity in children treated for acute lymphoblastic leukemia	48 European ancestry cases, 537 European ancestry controls	NA	9q33.2		rs62576054-C	NR	8E-7		16.7	[3.92-71.13]	Illumina [10838245] (imputed)	N
1533	chr9	124332499	124332500	rs7032907	31235810	Fung K	2019-06-24	Sci Rep	Genome-wide association study identifies loci for arterial stiffness index in 127,121 UK Biobank participants.	Arterial stiffness index	127,121 European ancestry individuals	NA	9q33.2	DAB2IP	rs7032907-T	0.505	5E-6		0.019	[0.011-0.027] unit decrease	Affymetrix [~ 10446505] (imputed)	N
1534	chr9	124389883	124389884	rs147031505	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		DAB2IP	rs147031505-?	NR	4E-15		1.37433	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1534	chr9	124391683	124391684	rs78424955	34624637	Zainul Abidin FN	2021-09-21	Neuroimage Clin	Glucose hypometabolism in the Auditory Pathway in Age Related Hearing Loss in the ADNI cohort.	Age related hearing loss-related regional glucose metabolism (Bilateral Heschl's gyrus)	228 European ancestry cases, 587 European ancestry controls	NA	9q33.2		rs78424955-?	NR	2E-6		0.315	[0.19-0.44] unit increase	Illumina [5082878] (imputed)	N
1534	chr9	124412947	124412948	rs10818576	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	9q33.2	DAB2IP	rs10818576-T	0.7608	5E-13		0.0161	[0.012-0.02] unit decrease	Affymetrix [18391927] (imputed)	N
1534	chr9	124412947	124412948	rs10818576	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9q33.2		rs10818576-?	NR	9E-12				NR [~ 8900000] (imputed)	N
1534	chr9	124412947	124412948	rs10818576	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	9q33.2	DAB2IP	rs10818576-T	0.7561	8E-9		0.0429	[0.028-0.057] unit decrease	NR [8041861] (imputed)	N
1534	chr9	124413190	124413191	rs10818577	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	9q33.2	DAB2IP	rs10818577-C	NR	6E-10		0.0206122	[0.014-0.027] unit increase	Affymetrix [319769] (imputed)	N
1534	chr9	124413190	124413191	rs10818577	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	9q33.2	DAB2IP	rs10818577-C	NR	2E-10		0.021056	[0.015-0.028] unit increase	Affymetrix [319769] (imputed)	N
1534	chr9	124413190	124413191	rs10818577	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	9q33.2	DAB2IP	rs10818577-C	NR	2E-8		0.0194027	[0.013-0.026] unit decrease	Affymetrix [321788] (imputed)	N
1534	chr9	124414904	124414905	rs10818579	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	9q33.2		rs10818579-A	0.225283019	1E-8		0.092271835	[0.061-0.124] unit increase	Illumina [13427135] (imputed)	N
1534	chr9	124415021	124415022	rs10818580	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	9q33.2		rs10818580-A	0.22	5E-9		5.85	z score increase	Affymetrix [9061022] (imputed)	N
1534	chr9	124415086	124415086	rs145794380	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		DAB2IP	rs145794380-?	NR	4E-9	(male)	2.37442	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1534	chr9	124415690	124415691	rs10985343	32469254	Matsunaga H	2020-05-29	Circ Genom Precis Med	Transethnic Meta-analysis of Genome-wide Association Studies Identifies Three New Loci and Characterizes Population-specific Differences for Coronary Artery Disease.	Coronary artery disease	15,302 Japanese ancestry cases, 76,014 European and East Asian ancestry cases, 36,140 Japanese ancestry controls, 264,785 European and East Asian ancestry controls	NA	9q33.2	DAB2IP	rs10985343-C	0.31	4E-8		1.05	[1.02-1.07]	Illumina [5167567] (imputed)	N
1534	chr9	124416939	124416940	rs10985344	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	9q33.2	DAB2IP	rs10985344-A	0.25	4E-9	(EA)	0.0171	[0.011-0.023] unit increase	Affymetrix, Illumina [10537485] (imputed)	N
1534	chr9	124416939	124416940	rs10985344	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	9q33.2	DAB2IP	rs10985344-A	0.25	3E-9		0.017	[0.011-0.023] unit increase	Affymetrix, Illumina [10537485] (imputed)	N
1534	chr9	124419721	124419722	rs10985348	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	9q33.2	DAB2IP	rs10985348-?	NR	1E-13		0.0418962	[0.031-0.053] unit increase	Illumina [4804024] (imputed)	N
1534	chr9	124419721	124419722	rs10985348	32469254	Matsunaga H	2020-05-29	Circ Genom Precis Med	Transethnic Meta-analysis of Genome-wide Association Studies Identifies Three New Loci and Characterizes Population-specific Differences for Coronary Artery Disease.	Coronary artery disease	15,302 Japanese ancestry cases, 36,140 Japanese ancestry controls	NA	9q33.2	DAB2IP	rs10985348-C	0.24	7E-11		1.16	[1.11-1.21]	Illumina [5932413] (imputed)	N
1534	chr9	124420172	124420173	rs885150	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	9q33.2	DAB2IP	rs885150-T	0.7304	8E-10		0.0355	[0.024-0.047] unit decrease	Affymetrix [at least 7947838] (imputed)	N
1534	chr9	124421964	124421965	rs4837886	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	9q33.2	DAB2IP	rs4837886-?	NR	4E-9	(EA)			Affymetrix, Illumina [10537485] (imputed)	N
1534	chr9	124421964	124421965	rs4837886	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	9q33.2	DAB2IP	rs4837886-?	NR	4E-9				Affymetrix, Illumina [10537485] (imputed)	N
1534	chr9	124422402	124422403	rs7025486	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	9q33.2	DAB2IP	rs7025486-A	0.259586	4E-8		1.05	[1.03-1.07]	NR [8126035] (imputed)	N
1534	chr9	124422402	124422403	rs7025486	20622881	Gretarsdottir S	2010-07-11	Nat Genet	Genome-wide association study identifies a sequence variant within the DAB2IP gene conferring susceptibility to abdominal aortic aneurysm.	Abdominal aortic aneurysm	1,292 European ancestry cases, 30,503 European ancestry controls	3,267 European ancestry cases, 7,451 European ancestry controls	9q33.2	DAB2IP	rs7025486-A	0.23	5E-10		1.21	[1.14-1.28]	Illumina [293677]	N
1534	chr9	124425242	124425243	rs10985349	27899403	Jones GT	2016-11-29	Circ Res	Meta-Analysis of Genome-Wide Association Studies for Abdominal Aortic Aneurysm Identifies Four New Disease-Specific Risk Loci.	Abdominal aortic aneurysm	4,972 European ancestry cases, 99,858 European ancestry controls	2,482 European ancestry cases, 2,750 cases, 2,645 European ancestry controls, 5,263 controls	9q33.2	DAB2IP	rs10985349-T	0.195	2E-11		1.171	[1.118-1.226]	Affymetrix, Illumina [5363770] (imputed)	N
1534	chr9	124427372	124427373	rs1571801	28394258	Wild PS	2017-04-10	J Clin Invest	Large-scale genome-wide analysis identifies genetic variants associated with cardiac structure and function.	Left atrial antero-posterior diameter	30,201 European ancestry individuals	NA	9q33.2	NR	rs1571801-T	0.2516	7E-6		0.0198	[0.011-0.028] unit increase	Affymetrix, Illumina [at least 283291] (imputed)	N
1534	chr9	124434518	124434519	rs1010235	33590662	Heilbronner U	2021-02-15	Am J Med Genet B Neuropsychiatr Genet	"The Heidelberg Five" personality dimensions: Genome-wide associations, polygenic risk for neuroticism, and psychopathology 20 years after assessment.	Type A behavior	3,268 European ancestry individuals	NA	9q33.2	NR	rs1010235-A	0.9564	2E-6		0.2928	[0.17-0.41] unit increase	Illumina [8348463] (imputed)	N
1534	chr9	124476012	124476013	rs35061590	23534349	Jeff JM	2013-03-28	Ann Hum Genet	Generalization of variants identified by genome-wide association studies for electrocardiographic traits in African Americans.	Heart rate	455 African American individuals	NA	9q33.2	DAB2IP	rs35061590-T		9E-6		16.03	[NR] ms increase	Illumina [> 930000]	N
1535	chr9	124521259	124521260	rs3747851	23648065	Low SK	2013-05-04	Cancer Sci	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (docetaxel)	147 Japanese ancestry cases, 233 Japanese ancestry controls	NA	9q33.2	DAB2IP	rs3747851-T	0.176	6E-7	(Allelic model)	2.377	[1.693-3.339]	Illumina [733202]	N
1535	chr9	124535525	124535526	rs56200518	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	9q33.2		rs56200518-?	NR	8E-10		0.0598591	[0.04-0.08] unit increase	Affymetrix [20259828] (imputed)	N
1535	chr9	124549641	124549642	rs10985375	23400010	Del-Aguila JL	2013-02-12	Pharmacogenomics J	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NA	9q33.2	DAB2IP	rs10985375-A	0.1	2E-6	(AA-triglyceride response)	33.94	[19.81-48.07] mg/dL decrease	Affymetrix, Illumina [> 2000000] (imputed)	N
1535	chr9	124560852	124560853	rs10818593	23934736	Yu B	2013-08-11	Genet Epidemiol	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels  (X-11787)	1,260 African American individuals	NA	9q33.2	DAB2IP	rs10818593-C		9E-6		0.08	[0.04-0.11] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1535	chr9	124565819	124565820	rs10760187	22699663	Divaris K	2012-07-01	J Dent Res	Genome-wide association study of periodontal pathogen colonization.	Periodontal microbiota	1,020 European ancestry individuals	NA	9q33.2	TTLL11, DAB2IP	rs10760187-C	0.498	5E-7	(P. gingi)	2.07	[1.55-2.76]	Affymetrix [~ 2500000] (imputed)	N
1535	chr9	124569489	124569493	rs201581325	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	9q33.2	intergenic	rs201581325-T	NR	9E-6	(AA)			Illumina [up to 11995908] (imputed)	N
1535	chr9	124569489	124569493	rs201581325	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	9q33.2	intergenic	rs201581325-T	NR	9E-6				Illumina [up to 11995908] (imputed)	N
1535	chr9	124578781	124578782	rs10985402	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	9q33.2		rs10985402-T	0.2472	4E-8		0.0089	[0.0058-0.012] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1535	chr9	124583230	124583231	rs3839901	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	9q33.2	Intergenic	rs3839901-?	NR	6E-6		0.0145237	[0.0082-0.0208] unit decrease	Illumina [13520550] (imputed)	N
1535	chr9	124583230	124583231	rs3839901	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	9q33.2	Intergenic	rs3839901-?	NR	2E-6	(men)	0.0210872	[0.012-0.03] unit decrease	Illumina [13520550] (imputed)	N
1535	chr9	124583554	124583555	rs74840871	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9q33.2	NR	rs74840871-T	0.01394	1E-8	(BLVRB)	0.3762	NR unit decrease	Illumina [1671387] (imputed)	N
1535	chr9	124588303	124588304	rs4837892	31080455	Fatumo S	2019-04-26	Front Genet	Complimentary Methods for Multivariate Genome-Wide Association Study Identify New Susceptibility Genes for Blood Cell Traits.	Blood cell traits (multivariate analysis)	up to 6,407 Sub-Saharan African ancestry individuals	NA	9q33.2	TTLL11	rs4837892-?	NR	3E-8				Illumina [20594536] (imputed)	N
1535	chr9	124594338	124594339	rs4468007	25201988	Rietveld CA	2014-09-08	Proc Natl Acad Sci U S A	Common genetic variants associated with cognitive performance identified using the proxy-phenotype method.	Educational attainment	106,736 European ancestry individuals	NA	9q33.2	intergenic	rs4468007-T	0.554	3E-6		0.021	[NR] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1535	chr9	124596991	124596992	rs56678373	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9q33.2	NR	rs56678373-A	0.01045	1E-8	(BLVRB)	0.3762	NR unit decrease	Illumina [1671387] (imputed)	N
1535	chr9	124602727	124602728	rs9886840	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	9q33.2	TTLL11	rs9886840-A	0.420291	4E-8		0.0114631	[0.0074-0.0156] unit decrease	NR [16516521] (imputed)	N
1535	chr9	124602778	124602779	rs7043521	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	9q33.2	NR	rs7043521-?		7E-11		0.0142704	[0.01-0.0186] unit increase	Affymetrix [19400418] (imputed)	N
1535	chr9	124608608	124608609	rs10818604	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	9q33.2		rs10818604-?	NR	1E-13				NR [~ 8900000] (imputed)	N
1535	chr9	124609264	124609265	rs4446794	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	9q33.2	TTLL11	rs4446794-A	NR	3E-9		0.026681593	[0.018-0.035] unit increase	Affymetrix [NR]	N
1535	chr9	124611515	124611516	rs10985420	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	9q33.2	Intergenic	rs10985420-T	0.5833	2E-17	(MTAG)	0.0142	[0.011-0.018] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1535	chr9	124611515	124611516	rs10985420	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	9q33.2	Intergenic	rs10985420-C	0.4167	3E-9		0.0136	[0.0091-0.0181] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1535	chr9	124611515	124611516	rs10985420	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	9q33.2	Intergenic	rs10985420-T	0.5751	1E-9	(MTAG)	0.014	[0.0095-0.0185] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1535	chr9	124617899	124617900	rs12375949	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	9q33.2		rs12375949-T	0.4312	2E-22		0.0138	[0.011-0.017] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1535	chr9	124617899	124617900	rs12375949	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	9q33.2	Intergenic	rs12375949-T	0.4312	9E-25	(MTAG)	0.0136	[0.011-0.016] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1535	chr9	124617918	124617919	rs7032484	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	9q33.2	TTLL11	rs7032484-A	0.4411	5E-10		0.012646251	[0.0087-0.0166] unit increase	Affymetrix [up to 18485882] (imputed)	N
1535	chr9	124618385	124618386	rs10818606	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability (MTAG)	436,124 European ancestry individuals	NA	9q33.2	TTLL11	rs10818606-?	NR	7E-9		5.8	z score decrease	Affymetrix, Illumina, Perlegen [7333576] (imputed)	N
1535	chr9	124618385	124618386	rs10818606	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	9q33.2	NR	rs10818606-T	0.4026	6E-10		0.014087055	NR unit decrease	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
1535	chr9	124620795	124620796	rs4837905	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	9q33.2	TTLL11	rs4837905-T	0.2925	1E-9		0.013537678	[0.0092-0.0179] unit increase	Affymetrix [up to 18485882] (imputed)	N
1535	chr9	124621728	124621729	rs4240470	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	9q33.2		rs4240470-C	0.7071	4E-8		40.055244	z score increase	NR [6814003]	N
1535	chr9	124621728	124621729	rs4240470	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	9q33.2	TTLL11	rs4240470-?	NR	2E-9		0.013416334	[0.009-0.0178] unit increase	NR [7306098]	N
1535	chr9	124627011	124627012	rs6478538	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		9q33.2	TTLL11	rs6478538-A	0.322821	2E-9		0.00881355	[0.0059-0.0117] unit increase	Affymetrix [12370749]	N
1535	chr9	124627011	124627012	rs6478538	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	9q33.2	NR	rs6478538-?	NR	8E-9				Affymetrix [~ 8270000] (imputed)	N
1535	chr9	124627011	124627012	rs6478538	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	9q33.2		rs6478538-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1535	chr9	124628938	124628938	rs10656322	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	9q33.2		rs10656322-CA	NR	2E-9		0.0148	[0.0099-0.0197] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1535	chr9	124631300	124631301	rs4388516	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	9q33.2	TTLL11	rs4388516-G	0.4397	1E-10		0.013091868	[0.0091-0.0171] unit increase	Affymetrix [up to 18485882] (imputed)	N
1536	chr9	124668197	124668198	rs4518734	29251981	Weafer J	2017-12-01	Exp Clin Psychopharmacol	Hierarchical investigation of genetic influences on response inhibition in healthy young adults.	Inhibitory control	934 European ancestry individuals	NA	9q33.2	TTLL11	rs4518734-A	0.163	3E-6				Illumina [4873750] (imputed)	N
1536	chr9	124678820	124678821	rs117000167	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	9q33.2	BC039180	rs117000167-G	1.0	2E-6	(AA)	0.568	unit increase	Illumina [NR] (imputed)	N
1536	chr9	124688607	124688608	rs9408932	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	9q33.2	DAB2IP	rs9408932-?	NR	8E-6	(PC 38:2)	0.91948885	[0.51-1.32] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1536	chr9	124738710	124738711	rs16911180	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	9q33.2		rs16911180-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1536	chr9	124738710	124738711	rs16911180	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	9q33.2		rs16911180-?	NR	2E-9		0.0164657	[0.011-0.022] unit decrease	Affymetrix [20259828] (imputed)	N
1536	chr9	124755431	124755432	rs2416845	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	9q33.2		rs2416845-T	0.9775	4E-8		0.0263	[0.017-0.036] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1537	chr9	124873392	124873393	rs2773871	30850646	Tziotzios C	2019-03-08	Nat Commun	Genome-wide association study in frontal fibrosing alopecia identifies four susceptibility loci including HLA-B*07:02.	Frontal fibrosing alopecia	1,016 European ancestry cases, 4,145 European ancestry controls		9q33.2	NR	rs2773871-G	0.802	7E-6		1.37	[1.19-1.57]	Illumina [~ 8000000] (imputed)	N
1537	chr9	124887089	124887090	rs10985542	33717105	Donkel SJ	2021-02-24	Front Immunol	Common and Rare Variants Genetic Association Analysis of Circulating Neutrophil Extracellular Traps.	Myeloperoxidase-DNA complexes	5,590 European ancestry individuals	NA	9q33.2	MIR4478	rs10985542-A		3E-6		0.1	[0.061-0.139] unit increase	Illumina [11789982] (imputed)	N
1537	chr9	124897088	124897089	rs10120294	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	9q33.2	NR	rs10120294-?	NR	1E-7				Affymetrix [NR]	N
1537	chr9	124906722	124906723	rs3818638	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	9q33.2	NDUFA8	rs3818638-A	0.326	6E-6	(AST )	0.03	[NR] U/L increase	Illumina [899892]	N
1537	chr9	124908298	124908299	rs113249637	33836062	Kong XZ	2021-04-09	Cereb Cortex	Large-Scale Phenomic and Genomic Analysis of Brain Asymmetrical Skew.	Brain asymmetrical skew (vertical)	33,996 European ancestry individuals	NA	9q33.2	NDUFA8	rs113249637-G		3E-7		0.001336	[0.00082-0.00185] unit increase	Affymetrix [9904141] (imputed)	N
1538	chr9	124921752	124921753	rs7045306	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	9q33.2	NDUFA8, MORN5, MIR4478, LHX6, TTLL11	rs7045306-?		9E-7	(additive)	0.266	[0.16-0.37] unit decrease	Illumina [1492601] (imputed)	N
1538	chr9	124921752	124921753	rs7045306	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	9q33.2	NDUFA8, MORN5, MIR4478, LHX6, TTLL11	rs7045306-?		5E-6	(heterogeneous)	0.259	[0.15-0.37] unit decrease	Illumina [1492601] (imputed)	N
1538	chr9	124921752	124921753	rs7045306	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	9q33.2	NDUFA8, MORN5, MIR4478, LHX6, TTLL11	rs7045306-?		1E-6	(dominant)	0.271	[NR] unit decrease	Illumina [1492601] (imputed)	N
1538	chr9	124942543	124942544	rs7856367	24665060	Argos M	2014-03-24	J Med Genet	Genome-wide association study of smoking behaviours among Bangladeshi adults.	Smoking initiation	754 Bangladeshi ancestry never smoker males, 2,565 Bangladeshi ancestry never smoker females, 1,837 Bangladeshi ancestry ever smoker males, 198 Bangladeshi ancestry ever smoker females	NA	9q33.2	NR	rs7856367-?	NR	5E-6	(females)			Illumina [1211988] (imputed)	N
1538	chr9	124955114	124955115	rs4573350	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Squamous cell lung carcinoma	8,350 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	9q33.2	NR	rs4573350-T	NR	3E-9		1.13	[1.09-1.18]	NR [NR] (imputed)	N
1538	chr9	124955114	124955115	rs4573350	31326317	Dai J	2019-07-17	Lancet Respir Med	Identification of risk loci and a polygenic risk score for lung cancer: a large-scale prospective cohort study in Chinese populations.	Squamous cell lung carcinoma	3,860 Chinese ancestry cases, 4,490 European ancestry cases, 13,328 Chinese ancestry controls, 14,027 European ancestry controls	NA	9q33.2	NR	rs4573350-T	0.26	7E-9	(East Asian)	1.22	[1.14-1.31]	Illumina [~ 11000000] (imputed)	N
1538	chr9	124955114	124955115	rs4573350	31326317	Dai J	2019-07-17	Lancet Respir Med	Identification of risk loci and a polygenic risk score for lung cancer: a large-scale prospective cohort study in Chinese populations.	Squamous cell lung carcinoma	3,860 Chinese ancestry cases, 4,490 European ancestry cases, 13,328 Chinese ancestry controls, 14,027 European ancestry controls	NA	9q33.2	DAB2IP	rs4573350-T	0.505	3E-9		1.13	[1.09-1.18]	Illumina [~ 11000000] (imputed)	N
1538	chr9	124980129	124980130	rs10760213	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	9q33.2		rs10760213-A	0.3614	2E-8	(conditional-joint)	0.0082	[0.0053-0.0111] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1538	chr9	124981561	124981562	rs72767793	34476894	Schmitz J	2021-09-03	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study and polygenic risk score analysis for hearing measures in children.	Hearing function (left/right asymmetry)	5,344 European ancestry children	NA	9q33.2		rs72767793-A	0.72	1E-6		0.1	[0.061-0.139] unit decrease	Illumina [5305352] (imputed)	N
1538	chr9	124982499	124982500	rs1467737	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	9q33.2		rs1467737-T	0.4746	4E-9		0.0084	[0.0057-0.0111] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1538	chr9	124982499	124982500	rs1467737	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	9q33.2	Intergenic	rs1467737-T	0.4746	2E-10	(MTAG)	0.0084	[0.0059-0.0109] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1539	chr9	125111702	125111703	rs7022068	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	9q33.2	PTGS1	rs7022068-A	0.0514374658677167	1E-6	(G_Coprococcus_HB)	0.77029	[0.46-1.08] unit decrease	Illumina [7711310] (imputed)	N
1539	chr9	125139735	125139736	rs187677005	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9q33.2	NR	rs187677005-T	0.01045	1E-8	(A2M)	1.467	NR unit increase	Illumina [1671387] (imputed)	N
1539	chr9	125158592	125158593	rs28760356	34469433	Ashvetiya T	2021-09-01	PLoS One	Identification of novel genetic susceptibility loci for thoracic and abdominal aortic aneurysms via genome-wide association study using the UK Biobank Cohort.	Abdominal aortic aneurysm	1,363 European, Indian, Caribbean, African ancestry cases, 27,260  European, Indian, Caribbean, African ancestry controls	NA	9q33.2		rs28760356-?	NR	1E-7		2.11058		NR [NR] (imputed)	N
1540	chr9	125221223	125221224	rs1771792	26420894	Wuttke M	2015-09-28	Nephrol Dial Transplant	Genetic loci associated with renal function measures and chronic kidney disease in children: the Pediatric Investigation for Genetic Factors Linked with Renal Progression Consortium.	Glomerular filtration rate in chronic kidney disease	up to 744 Central European ancestry child cases, up to 397 Turkish ancestry child cases	NA	9q33.2	OR1J1, PTGS1	rs1771792-C	0.9	4E-6	(Turkish ancestry)	0.21	[0.11-0.31] unit decrease	Illumina [~ 8300000] (imputed)	N
1540	chr9	125273573	125273574	rs4836891	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal cancer	978 Austrian ancestry cases, 4,294 European ancestry controls	NA	9q33.2	Intergenic	rs4836891-?		9E-7		1.582	[NR]	Affymetrix [492217] (imputed)	N
1541	chr9	125364207	125364208	rs10985729	31626034	Thomsen H	2019-10-11	Melanoma Res	Genome-wide study on uveal melanoma patients finds association to DNA repair gene TDP1.	Presence of epithelioid cells in uveal melanoma	285 European ancestry cases, 286 European ancestry controls	NA	9q33.2		rs10985729-G	0.19	3E-7		2.11		Illumina [10258281] (imputed)	N
1541	chr9	125377086	125377087	rs972925	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	9q33.2	OR1B1	rs972925-?	NR	4E-7	(ornithine)	0.21451586	[0.13-0.3] unit increase	Affymetrix [at least 2500000] (imputed)	N
1541	chr9	125427806	125427807	rs4836906	31021400	Masotti M	2019-04-25	Biometrics	Pleiotropy informed adaptive association test of multiple traits using GWAS summary data.	Glycemic traits (pleiotropy)	46,186 European ancestry individuals	NA	9q33.2	OR1L1	rs4836906-?	NR	4E-9				NR [NR]	N
1542	chr9	125474458	125474459	rs187855416	31591132	Wu W	2019-10-07	Genetics	Retrospective Association Analysis of Longitudinal Binary Traits Identifies Important Loci and Pathways in Cocaine Use.	Longitudinal cocaine use	1,682 mostly never users, 296 moderate decrease users, 86 elevated chronic users, 167 mostly frequent users	NA	9q33.2	OR1L4	rs187855416-?	NR	9E-6	(AA)			Illumina [10215072] (imputed)	N
1542	chr9	125474458	125474459	rs187855416	31591132	Wu W	2019-10-07	Genetics	Retrospective Association Analysis of Longitudinal Binary Traits Identifies Important Loci and Pathways in Cocaine Use.	Longitudinal cocaine use	1,682 mostly never users, 296 moderate decrease users, 86 elevated chronic users, 167 mostly frequent users	NA	9q33.2	OR1L4	rs187855416-?	NR	2E-6				Illumina [10215072] (imputed)	N
1543	chr9	125573029	125573030	rs16912238	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	9q33.2	PDCL	rs16912238-G	0.0050	5E-6	(Weight )	0.03	[NR] kg increase	Illumina [899892]	N
1543	chr9	125612806	125612807	rs4838018	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	9q33.2	NA	rs4838018-C	0.8654	4E-8	(Female)	1.0615711	[1.04-1.08]	Affymetrix, Illumina [NR] (imputed)	N
1543	chr9	125614616	125614617	rs57140227	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	9q33.2		rs57140227-C	NR	3E-10		0.0206	[0.014-0.027] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
1543	chr9	125621609	125621610	rs2792990	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	9q33.2	NR	rs2792990-C	0.8553	1E-10		1.056	[1.04-1.07]	Affymetrix, Illumina [NR] (imputed)	N
1543	chr9	125683855	125683856	rs3824535	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Subjective well-being (MTAG)	388,538 European ancestry individuals	NA	9q33.2	NR	rs3824535-T	0.8743	4E-9		0.0165	[0.011-0.022] unit decrease	Illumina [NR] (imputed)	N
1543	chr9	125689693	125689694	rs10818763	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	9q33.2	NR	rs10818763-C	0.676	2E-12		0.0358	[0.026-0.046] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1543	chr9	125696598	125696599	rs369508364	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	9q33.2	ZBTB26	rs369508364-T	0.0076	5E-20		0.1051	[0.083-0.128] unit decrease	Affymetrix [18391927] (imputed)	N
1544	chr9	125701607	125701608	rs10985827	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	9q33.2	FAM53A, SLBP, TMEM129, TACC3	rs10985827-?		5E-10				NR [7428630] (imputed)	N
1544	chr9	125701607	125701608	rs10985827	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	9q33.2	RABGAP1, GPR21	rs10985827-G	0.140872	6E-16		0.029972	[0.023-0.037] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1544	chr9	125707346	125707347	rs6478585	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	9q33.2		rs6478585-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1544	chr9	125713525	125713526	rs10760260	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Pulse pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	9q33.2	NR	rs10760260-T	0.1456	2E-6	(EA)	0.228	mmHg decrease	Illumina [242296]	N
1544	chr9	125719922	125719923	rs10818769	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	9q33.2	NR	rs10818769-G	0.856966	3E-9		0.016972	[0.011-0.023] unit decrease	Affymetrix [16668957] (imputed)	N
1544	chr9	125723226	125723227	rs9695700	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	9q33.2	NR	rs9695700-T	0.1351	1E-9				NR [9056863] (imputed)	N
1544	chr9	125724807	125724808	rs10818772	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	9q33.2		rs10818772-T	NR	1E-8		0.0132	[0.0087-0.0177] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
1544	chr9	125745041	125745042	rs9409266	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	9q33.2		rs9409266-?	NR	1E-8		0.0167771	[0.011-0.023] unit increase	NR [6912294] (imputed)	N
1544	chr9	125755570	125755571	rs10818775	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	9q33.2	RABGAP1	rs10818775-C		2E-6		0.367	unit increase	Affymetrix [at least 2696785] (imputed)	N
1544	chr9	125755570	125755571	rs10818775	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	9q33.2	RABGAP1	rs10818775-C		4E-9		0.332	unit increase	Affymetrix [at least 2696785] (imputed)	N
1544	chr9	125755570	125755571	rs10818775	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	9q33.2	RABGAP1	rs10818775-C		3E-6	(EA)	0.293	unit increase	Affymetrix [at least 2696785] (imputed)	N
1544	chr9	125755570	125755571	rs10818775	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	9q33.2	RABGAP1	rs10818775-C		1E-7		0.27	unit increase	Affymetrix [at least 2696785] (imputed)	N
1544	chr9	125755570	125755571	rs10818775	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	9q33.2	RABGAP1	rs10818775-C		2E-12		0.263	unit increase	Affymetrix [at least 2696785] (imputed)	N
1544	chr9	125760862	125760863	rs587364	31097437	Plotnikov D	2019-05-16	Br J Ophthalmol	Association between birth weight and refractive error in adulthood: a Mendelian randomisation study.	Birth weight	188,039 European ancestry individuals	NA	9q33.2	NR	rs587364-T	0.16	2E-12		0.033	[0.023-0.043] z score increase	Affymetrix [up to 10400000] (imputed)	N
1544	chr9	125770690	125770691	rs187416346	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	9q33.2	Intergenic	rs187416346-A	0.0351	1E-8	(MTAG)	0.0277	[0.018-0.037] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1544	chr9	125770690	125770691	rs187416346	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	9q33.2	Intergenic	rs187416346-G	0.9649	1E-8		0.0303	[0.02-0.041] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1544	chr9	125820079	125820080	rs803734	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical thickness (MOSTest)	26,502 European ancestry individuals	NA	9q33.2	THADA, ZFP36L2, PLEKHH2	rs803734-?		1E-8				NR [7428630] (imputed)	N
1544	chr9	125820824	125820825	rs61173651	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	9q33.2		rs61173651-A	NR	1E-9		0.0221	[0.015-0.029] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
1544	chr9	125824054	125824055	rs700059	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	9q33.2	RC3H2, ZBTB6, ZBTB26, RABGAP1, GPR21, STRBP, CRB2, DENND1A	rs700059-?		2E-14				NR [7428630] (imputed)	N
1544	chr9	125824054	125824055	rs700059	27680694	Horikoshi M	2016-10-13	Nature	Genome-wide associations for birth weight and correlations with adult disease.	Birth weight	133,903 European ancestry individuals, 6,635 African American individuals, 420 Turkish ancestry individuals, 365 Moroccan ancestry individuals, 395 Surinamese ancestry individuals, 840 Chinese ancestry individuals.	9,799 European ancestry individuals, 1,449 Filipino ancestry individuals.	9q33.2	STRBP	rs700059-G	0.16	1E-12		0.0361	[0.026-0.046] unit increase	Affymetrix, Illumina [at least 22434434] (imputed)	N
1545	chr9	125832878	125832879	rs803733	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	9q33.2		rs803733-C	NR	6E-17		0.0142	[0.011-0.018] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1545	chr9	125832878	125832879	rs803733	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9q33.2		rs803733-?	NR	2E-17				NR [~ 8900000] (imputed)	N
1545	chr9	125835590	125835591	rs117160188	34779240	Cheng B	2021-11-01	Bone Joint Res	Gut microbiota is associated with bone mineral density : an observational and genome-wide environmental interaction analysis in the UK Biobank cohort.	Total bone mineral density x gut microbiota (genus Dialister) interaction	2,293 European ancestry individuals	NA	9q33.2		rs117160188-A	NR	4E-8		0.374	[0.24-0.51] unit increase	Affymetrix [509886] (imputed)	N
1545	chr9	125864070	125864071	rs372223428	34620984	Skuladottir AT	2021-10-07	Commun Biol	A genome-wide meta-analysis uncovers six sequence variants conferring risk of vertigo.	Vertigo	48,072 European ancestry cases, 894,541 European ancestry controls	NA	9q33.3		rs372223428-T	NR	2E-6		2.9627		Affymetrix, Illumina [62056310] (imputed)	N
1545	chr9	125864491	125864492	rs1971692	31806883	de Las Fuentes L	2019-12-06	Pharmacogenomics J	Genome-wide meta-analysis of variant-by-diuretic interactions as modulators of lipid traits in persons of European and African ancestry.	HDL cholesterol levels x thiazide or thiazide-like diuretics use interaction	6,878 European ancestry exposed individuals, 30,715 European ancestry unexposed individuals, 3,923 African American and African ancestry exposed individuals, 5,218 African American and African ancestry unexposed individuals	NA	9q33.3	GPR21, RABGAP1, MIR600, STRBP	rs1971692-?	NR	7E-7		0.0339	[0.02-0.048] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1545	chr9	125866069	125866070	rs700082	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	9q33.3	RABGAP1	rs700082-G	0.8128	2E-10		0.2261	[0.16-0.3] mmHg increase	Affymetrix [NR] (imputed)	N
1545	chr9	125869566	125869567	rs700083	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	9q33.3		rs700083-C	0.15623	7E-9		0.0217206	[0.014-0.029] unit decrease	Illumina [13479924] (imputed)	N
1545	chr9	125870465	125870466	rs700085	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	9q33.3	NR	rs700085-T	0.088019	4E-11		0.00900539	[0.0061-0.0119] unit increase	Affymetrix [16582909] (imputed)	N
1545	chr9	125870465	125870466	rs700085	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	9q33.3	NR	rs700085-T	0.088019	2E-12		0.0105027	[0.0073-0.0137] unit increase	Affymetrix [16582965] (imputed)	N
1545	chr9	125908279	125908280	rs9886870	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q33.3	NR	rs9886870-C	0.256213	9E-12				Affymetrix, Illumina [23472807] (imputed)	N
1545	chr9	125918771	125918772	rs7048271	31681408	Yang XL	2019-10-11	Front Genet	Three Novel Loci for Infant Head Circumference Identified by a Joint Association Analysis.	Infant head circumference (MTAG)	up to 182,902 European ancestry individuals	NA	9q33.3	NR	rs7048271-A	0.1535	9E-10		0.09468338	[0.064-0.125] z score increase	NR [1977400] (imputed)	N
1545	chr9	125918771	125918772	rs7048271	31681408	Yang XL	2019-10-11	Front Genet	Three Novel Loci for Infant Head Circumference Identified by a Joint Association Analysis.	Birth length (MTAG)	up to 182,902 European ancestry individuals	NA	9q33.3	NR	rs7048271-A	0.15	4E-12		0.059419204	[0.043-0.076] unit increase	NR [1977400] (imputed)	N
1545	chr9	125956240	125956241	rs10818788	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	9q33.3		rs10818788-A	0.208337	3E-10		0.0156631	[0.011-0.021] unit decrease	Illumina [13479295] (imputed)	N
1545	chr9	125956240	125956241	rs10818788	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	9q33.3	STRBP	rs10818788-?	NR	1E-12		0.024936533	[0.018-0.032] unit decrease	Illumina [27896057] (imputed)	N
1546	chr9	125975396	125975397	rs7026688	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	9q33.3	NR	rs7026688-G	0.8632	3E-11		0.0444	[0.031-0.058] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1546	chr9	126012546	126012547	rs2416898	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	9q33.3	STRBP	rs2416898-?	NR	4E-7	(AA)	0.06437797	[0.04-0.089] unit increase	Illumina [34656550] (imputed)	N
1546	chr9	126012546	126012547	rs2416898	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	9q33.3	STRBP	rs2416898-?	NR	2E-11		0.043	[0.031-0.055] unit increase	Illumina [34656550] (imputed)	N
1546	chr9	126018714	126018715	rs10985915	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	9q33.3	STRBP	rs10985915-G	0.111619	2E-10		0.022272374	[0.015-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
1546	chr9	126018714	126018715	rs10985915	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	9q33.3	NR	rs10985915-G	0.110633	7E-14		0.022597	[0.017-0.029] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1546	chr9	126020404	126020405	rs10818797	31681408	Yang XL	2019-10-11	Front Genet	Three Novel Loci for Infant Head Circumference Identified by a Joint Association Analysis.	Birth weight (MTAG)	up to 182,902 European ancestry individuals	NA	9q33.3	NR	rs10818797-T	0.86	1E-11		0.037441894	[0.027-0.048] unit decrease	NR [1977400] (imputed)	N
1546	chr9	126025708	126025709	rs150904119	34779240	Cheng B	2021-11-01	Bone Joint Res	Gut microbiota is associated with bone mineral density : an observational and genome-wide environmental interaction analysis in the UK Biobank cohort.	Total bone mineral density x gut microbiota (genus Dialister) interaction	2,293 European ancestry individuals	NA	9q33.3		rs150904119-T	NR	3E-8		0.381	[0.25-0.52] unit increase	Affymetrix [509886] (imputed)	N
1546	chr9	126073408	126073410	rs776010265	29907492	Nakahara S	2018-06-12	Schizophr Res	Polygenic risk score, genome-wide association, and gene set analyses of cognitive domain deficits in schizophrenia.	Visual memory	2 Alaskan native ancestry schizophrenia cases, 18 Asian ancestry schizophrenia cases, 20 African American schizophrenia cases, 1 Native Hawaiian ancestry schizophrenia cases, 86 European ancestry schizophrenia cases, 2 Alaskan native ancestry controls, 10 Asian ancestry controls, 17 African American controls, 1 Native Hawaiian ancestry controls, 106 European ancestry controls	NA	9q33.3	intergenic	rs776010265-G		1E-6		0.49	[NR] unit decrease	Illumina [NR] (imputed)	N
1546	chr9	126073973	126073974	rs76669366	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9q33.3	NR	rs76669366-T	0.0122	3E-8	(LUM)	0.2373	NR unit increase	Illumina [1671387] (imputed)	N
1546	chr9	126081451	126081452	rs79389622	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Fatty acid-binding protein, adipocyte levels	21,758 European ancestry individuals	9,173 individuals	9q33.3		rs79389622-A	0.0088	1E-6		0.4101	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1546	chr9	126082532	126082533	rs72755120	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	9q33.3		rs72755120-G	0.16751	4E-6		0.042295	[0.024-0.06] unit decrease	Affymetrix [15580782] (imputed)	N
1547	chr9	126093776	126093777	rs10760276	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	9q33.3	NR	rs10760276-?	NR	2E-11				Affymetrix [~ 8270000] (imputed)	N
1547	chr9	126093998	126093999	rs10760277	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		9q33.3	CRB2	rs10760277-C	0.614902	4E-10		0.00886536	[0.0061-0.0116] unit decrease	Affymetrix [12370749]	N
1547	chr9	126093998	126093999	rs10760277	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	9q33.3		rs10760277-?	NR	3E-11				NR [~ 8900000] (imputed)	N
1547	chr9	126094155	126094156	rs10985968	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	9q33.3	NA	rs10985968-C	0.5018	8E-14		0.0129	[0.0096-0.0162] unit increase	NR [~ 27400000] (imputed)	N
1547	chr9	126105290	126105291	rs10760279	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	9q33.3	NR	rs10760279-?	NR	3E-8	(X3rd ventricle)			NR [9227495] (imputed)	N
1547	chr9	126105290	126105291	rs10760279	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	9q33.3	NR	rs10760279-G	NR	4E-10		0.02	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
1547	chr9	126105290	126105291	rs10760279	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	9q33.3	DENND1A, MIR601, RC3H2, SNORD90, ZBTB6, ZBTB26, RABGAP1, GPR21, MIR600HG, MIR600, STRBP	rs10760279-T	0.413875663985513	2E-10		0.021591108	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1547	chr9	126105290	126105291	rs10760279	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	9q33.3	CRB2	rs10760279-T	0.412	7E-8		0.022	[0.014-0.03] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1547	chr9	126105290	126105291	rs10760279	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	9q33.3	CRB2	rs10760279-T	0.412	2E-7	(EA)	0.022	[0.014-0.03] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1547	chr9	126108977	126108978	rs78501200	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9q33.3	NR	rs78501200-G	0.01568	3E-8	(LGALS3BP)	0.02723	NR unit increase	Illumina [1671387] (imputed)	N
1547	chr9	126110305	126110306	rs1970584	25201988	Rietveld CA	2014-09-08	Proc Natl Acad Sci U S A	Common genetic variants associated with cognitive performance identified using the proxy-phenotype method.	Educational attainment	106,736 European ancestry individuals	NA	9q33.3	intergenic	rs1970584-A	0.06	5E-7		0.048	[NR] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1547	chr9	126111869	126111870	rs60821446	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9q33.3	NR	rs60821446-C	0.01045	2E-8	(LTF)	0.3704	NR unit increase	Illumina [1671387] (imputed)	N
1547	chr9	126114011	126114012	rs4838049	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	9q33.3		rs4838049-?	NR	9E-9				NR [~ 8900000] (imputed)	N
1547	chr9	126114378	126114379	rs10985979	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	9q33.3	NR	rs10985979-?	NR	2E-8	(X3rd ventricle)			NR [9227495] (imputed)	N
1547	chr9	126121730	126121731	rs61360336	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (min-P)	26,502 European ancestry individuals	NA	9q33.3	THADA, ZFP36L2, PLEKHH2	rs61360336-?		4E-8				NR [7428630] (imputed)	N
1547	chr9	126128210	126128211	rs1105223	29273807	Turcot V	2017-12-22	Nat Genet	Protein-altering variants associated with body mass index implicate pathways that control energy intake and expenditure in obesity.	Body mass index	up to 449,889 European ancestry individuals, up to 29,398 South Asian ancestry individuals, up to 27,610 African American individuals, up to 8,839 East Asian individuals, up to 10,772 Hispanic ancestry individuals	up to 196,766 European ancestry individuals	9q33.3	CRB2	rs1105223-T	0.6045	4E-10		0.0111	[0.0076-0.0146] unit increase	Illumina [246328]	N
1547	chr9	126134231	126134232	rs12342024	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	9q33.3	NR	rs12342024-?		2E-9		0.0205172	[0.014-0.027] unit decrease	Affymetrix [19400418] (imputed)	N
1547	chr9	126138360	126138361	rs34948800	30894546	Ivarsdottir EV	2019-03-20	Nat Commun	Sequence variation at ANAPC1 accounts for 24% of the variability in corneal endothelial cell density.	Corneal endothelial cell size variation coefficient	6,125 Icelandic ancestry individuals	NA	9q33.3	NR	rs34948800-T		3E-7		0.147	[NR] unit increase	Illumina [NR]	N
1547	chr9	126141089	126141089	rs200913615	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	9q33.3	NR	rs200913615-?	NR	8E-6		0.1905	[0.11-0.27] unit decrease	Illumina [at least 560000] (imputed)	N
1547	chr9	126153264	126153265	rs12347368	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Tea consumption	336,898 European ancestry individuals	39,924 European ancestry individuals	9q33.3	DENND1A	rs12347368-C	0.9258	8E-7		0.0143	[0.0086-0.02] unit increase	Affymetrix [~ 7740000] (imputed)	N
1547	chr9	126154353	126154354	rs872863	30891314	Saad MN	2019-01-18	J Adv Res	Studying the effects of haplotype partitioning methods on the RA-associated genomic results from the North American Rheumatoid Arthritis Consortium (NARAC) dataset.	Rheumatoid arthritis	868 European ancestry cases, 1,194 European ancestry controls	NA	9q33.3	DENND1A	rs872863-G	0.94	2E-16				NR [509413]	N
1547	chr9	126154353	126154354	rs872863	23049088	Meng W	2012-10-09	Invest Ophthalmol Vis Sci	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		9q33.3	DENND1A	rs872863-?	0.082	2E-11			[NR]	Affymetrix, Illumina [152234]	N
1547	chr9	126168832	126168833	rs71511575	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	9q33.3	NR	rs71511575-T	0.112	5E-6	(IFNgamma_ABC_of_monocytes)			Illumina [5084123] (imputed)	N
1547	chr9	126183303	126183304	rs10733661	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	9q33.3	DENND1A	rs10733661-A	0.538	3E-9		0.007	[0.0046-0.0094] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
1547	chr9	126203659	126203660	rs1110320	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	9q33.3		rs1110320-C	0.394	2E-8		0.007	[0.005-0.009] unit decrease	NR [NR] (imputed)	N
1547	chr9	126214818	126214819	rs72755182	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		DENND1A	rs72755182-?	NR	1E-8		1.16026	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1548	chr9	126233078	126233079	rs72755190	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9q33.3		rs72755190-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1548	chr9	126241202	126241203	rs4836927	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	9q33.3	DENND1A	rs4836927-C	0.688	5E-15		0.01	[0.0075-0.0125] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
1548	chr9	126241202	126241203	rs4836927	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	9q33.3	DENND1A	rs4836927-C	0.6861	5E-11		0.01373496	[0.0096-0.0178] unit increase	Illumina [9339358] (imputed)	N
1548	chr9	126305041	126305042	rs7027071	26835600	Hu Y	2016-02-02	Nat Commun	GWAS of 89,283 individuals identifies genetic variants associated with self-reporting of being a morning person.	Morning vs. evening chronotype	38,937 European ancestry morning chronotype individuals, 50,346 European ancestry evening chronotype individuals	NA	9q33.3	NR	rs7027071-?	NR	8E-6				Illumina [7427422] (imputed)	N
1548	chr9	126311384	126311385	rs62579196	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		DENND1A	rs62579196-?	NR	6E-12	(male)	4.51906	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1548	chr9	126315122	126315123	rs6478623	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	9q33.3	NR	rs6478623-G	NR	1E-8		0.01539	[0.01-0.021] unit increase	Affymetrix [10847151] (imputed)	N
1548	chr9	126315122	126315123	rs6478623	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Suffering from nerves	369,499 European ancestry individuals	NA	9q33.3	DENND1A	rs6478623-T	0.279275	4E-8		5.51	z score decrease	NR [10847151] (imputed)	N
1548	chr9	126317323	126317324	rs10818834	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	9q33.3		rs10818834-T	0.7344	5E-9		0.014	[0.01-0.018] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
1548	chr9	126317323	126317324	rs10818834	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	9q33.3	DENND1A	rs10818834-T	0.7297	5E-12		1.0306606		Affymetrix [11880941] (imputed)	N
1548	chr9	126317323	126317324	rs10818834	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	9q33.3		rs10818834-?	NR	4E-11				NR [~ 8900000] (imputed)	N
1548	chr9	126329269	126329270	rs12342546	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	9q33.3		rs12342546-A	0.2441	1E-14		0.0128	[0.0095-0.0161] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1548	chr9	126329269	126329270	rs12342546	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	9q33.3	Intergenic	rs12342546-A	0.2441	4E-14	(MTAG)	0.0117	[0.0088-0.0146] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1548	chr9	126334484	126334485	rs73578186	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	9q33.3	NR	rs73578186-?		3E-7		0.0118711	[0.0073-0.0164] unit decrease	Affymetrix [19400418] (imputed)	N
1548	chr9	126334484	126334485	rs73578186	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (computer use)	408,815 European ancestry individuals	NA	9q33.3	NR	rs73578186-?		2E-10		0.0149904	[0.01-0.02] unit increase	Affymetrix [19400418] (imputed)	N
1548	chr9	126335817	126335818	rs76282124	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	9q33.3	MITF	rs76282124-?		9E-12				NR [7428630] (imputed)	N
1548	chr9	126351422	126351423	rs10986064	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	9q33.3		rs10986064-T	0.21	4E-35		12.37	z score increase	Affymetrix [9061022] (imputed)	N
1548	chr9	126351422	126351423	rs10986064	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	8,072 individuals	NA	9q33.3		rs10986064-T	0.21	4E-6				NR [13131314] (imputed)	N
1548	chr9	126351422	126351423	rs10986064	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	9q33.3		rs10986064-T	0.21	8E-26		10.51	z score increase	Affymetrix [9061022] (imputed)	N
1548	chr9	126352217	126352218	rs7852296	20691247	Verweij KJ	2010-08-04	Biol Psychol	A genome-wide association study of Cloninger's temperament scales: implications for the evolutionary genetics of personality.	Personality dimensions	5,117 European ancestry individuals from 2567 families	NA	9q33.3	DENND1A	rs7852296-A	0.09	9E-6	(Persistence)	0.17	[NR] unit decrease	Affymetrix, Illumina [1252387] (imputed)	N
1549	chr9	126355381	126355382	rs78676690	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	9q33.3		rs78676690-?	NR	1E-13		0.0301418	[0.022-0.039] unit increase	Affymetrix [20259828] (imputed)	N
1549	chr9	126367704	126367705	rs12115650	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 15)	19,670 European ancestry individuals	NA	9q33.3		rs12115650-?	NR	5E-12				NR [9705931] (imputed)	N
1549	chr9	126367704	126367705	rs12115650	30271922	Clifton EAD	2018-05-03	Commun Biol	Genome-wide association study for risk taking propensity indicates shared pathways with body mass index.	Self-reported risk-taking behaviour	113,882 European ancestry cases, 322,354 European ancestry controls	NA	9q33.3	DENND1A	rs12115650-G	0.72	2E-8		1.026	[1.017-1.035]	Affymetrix [7736308] (imputed)	N
1549	chr9	126367704	126367705	rs12115650	30181555	Strawbridge RJ	2018-09-04	Transl Psychiatry	Genetics of self-reported risk-taking behaviour, trans-ethnic consistency and relevance to brain gene expression.	Self-reported risk-taking behaviour	83,677 British ancestry cases, 244,662 British ancestry controls	2,764 South Asian ancestry cases, 3,139 African Caribbean ancestry cases, 16,169 European ancestry cases, 3,866 mixed ancestry cases, 4,267 South Asian ancestry controls, 4,341 African Caribbean ancestry controls, 31,814 European ancestry controls, 5,988 mixed ancestry controls	9q33.3	NR	rs12115650-A	0.27	2E-7		0.032	[0.02-0.044] unit decrease	Affymetrix [NR] (imputed)	N
1549	chr9	126378488	126378489	rs111305259	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	9q33.3		rs111305259-A	0.22	4E-20		9.18	z score increase	Affymetrix [9061022] (imputed)	N
1549	chr9	126378488	126378489	rs111305259	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	9q33.3	NR	rs111305259-A	0.1834	1E-17				NR [9056863] (imputed)	N
1549	chr9	126411238	126411239	rs10986081	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9q33.3	NR	rs10986081-G	0.01568	1E-11	(TNC)	0.06152	NR unit increase	Illumina [1671387] (imputed)	N
1549	chr9	126425817	126425818	rs56250933	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	9q33.3	NR	rs56250933-G	0.1732	1E-17				NR [9056863] (imputed)	N
1549	chr9	126435461	126435462	rs77701734	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	9q33.3	Intergenic	rs77701734-A	0.9231	4E-9	(MTAG)	0.0182	[0.012-0.024] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1549	chr9	126442739	126442740	rs10986087	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	9q33.3	NR	rs10986087-?	NR	9E-9				Affymetrix [~ 8270000] (imputed)	N
1549	chr9	126446777	126446778	rs10818854	23517042	Melen E	2013-04-01	Clin Exp Allergy	Genome-wide association study of body mass index in 23 000 individuals with and without asthma.	Body mass index in non-asthmatics	6,025 European ancestry children, 567 children,  6,334 European ancestry adult individuals, 2,050 adult individuals	NA	9q33.3	DENND1A	rs10818854-A	0.04	2E-7	(Children)			Illumina [up to 527642]	N
1549	chr9	126446777	126446778	rs10818854	21151128	Chen ZJ	2010-12-12	Nat Genet	Genome-wide association study identifies susceptibility loci for polycystic ovary syndrome on chromosome 2p16.3, 2p21 and 9q33.3.	Polycystic ovary syndrome	744 Han Chinese ancestry cases, 895 Han Chinese ancestry controls	3,338 Han Chinese ancestry cases, 5,792 Han Chinese ancestry controls	9q33.3	DENND1A	rs10818854-A	0.09	9E-18		1.51	[1.37-1.65]	Affymetrix [611633]	N
1549	chr9	126452935	126452936	rs7026674	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling nervous	373,121 European ancestry individuals	NA	9q33.3	DENND1A	rs7026674-T	0.288112	1E-8		5.67	z score increase	NR [10847151] (imputed)	N
1549	chr9	126480241	126480242	rs4388514	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	9q33.3	Intergenic	rs4388514-C	0.124	1E-8	(MTAG)	0.0121	[0.008-0.0162] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1550	chr9	126509286	126509287	rs117026123	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	9q33.3	DENND1A	rs117026123-C	0.959266	9E-12		0.0320745	[0.023-0.041] unit increase	NR [13737936] (imputed)	N
1550	chr9	126525211	126525212	rs2479106	22885925	Shi Y	2012-08-12	Nat Genet	Genome-wide association study identifies eight new risk loci for polycystic ovary syndrome.	Polycystic ovary syndrome	2,254 Han Chinese ancestry cases, 3,001 Han Chinese ancestry controls	8,226 Han Chinese ancestry cases, 7,578 Han Chinese ancestry controls	9q33.3	NR	rs2479106-G	NR	5E-10		1.35	[NR]	Affymetrix [NR] (imputed)	N
1550	chr9	126525211	126525212	rs2479106	21151128	Chen ZJ	2010-12-12	Nat Genet	Genome-wide association study identifies susceptibility loci for polycystic ovary syndrome on chromosome 2p16.3, 2p21 and 9q33.3.	Polycystic ovary syndrome	744 Han Chinese ancestry cases, 895 Han Chinese ancestry controls	3,338 Han Chinese ancestry cases, 5,792 Han Chinese ancestry controls	9q33.3	DENND1A	rs2479106-G	0.22	8E-19		1.34	[1.26-1.43]	Affymetrix [611633]	N
1550	chr9	126535552	126535553	rs3945628	34791234	Tyrmi JS	2021-11-13	Hum Reprod	Leveraging Northern European population history: novel low-frequency variants for polycystic ovary syndrome.	Polycystic ovary syndrome (adjusted for age)	797 European ancestry cases, 140,558 European ancestry controls	2,812 European ancestry cases, 229,788 European ancestry controls	9q33.3	DENND1A	rs3945628-C	0.0699	3E-12		1.4	[1.27-1.55]	NR [24154061] (imputed)	N
1550	chr9	126535552	126535553	rs3945628	34791234	Tyrmi JS	2021-11-13	Hum Reprod	Leveraging Northern European population history: novel low-frequency variants for polycystic ovary syndrome.	Polycystic ovary syndrome (adjusted for age and BMI)	482 European ancestry cases, 91,631 European ancestry controls	2,137 European ancestry cases, 68,690 European ancestry controls	9q33.3	DENND1A	rs3945628-C	0.0699	1E-8		1.38	[1.23-1.54]	NR [24481103] (imputed)	N
1550	chr9	126540565	126540566	rs1752167	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	9q33.3		rs1752167-A	NR	5E-10		0.0134	[0.0093-0.0175] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1550	chr9	126544608	126544609	rs2799465	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	9q33.3		rs2799465-C	NR	6E-10		0.0176	[0.012-0.023] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1550	chr9	126548209	126548210	rs16926842	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	9q33.3		rs16926842-?	NR	7E-12				NR [~ 8900000] (imputed)	N
1550	chr9	126549954	126549955	rs10986105	26284813	Hayes MG	2015-08-18	Nat Commun	Genome-wide association of polycystic ovary syndrome implicates alterations in gonadotropin secretion in European ancestry populations.	Polycystic ovary syndrome	984 European ancestry cases, 2,964 European ancestry controls	2,021 European ancestry cases, 2,566 European ancestry controls	9q33.3	DENND1A	rs10986105-T	0.05	2E-6		1.69	[1.3-2.2]	Illumina [at least 624044] (imputed)	N
1550	chr9	126555071	126555072	rs7861905	34050765	Zhang L	2021-05-29	J Clin Endocrinol Metab	Joint genome-wide association analyses identified 49 novel loci for age at natural menopause.	Age at menopause	181,219 European ancestry individuals, 43,861 East Asian ancestry individuals	NA	9q33.3		rs7861905-C	0.09	2E-8		0.14	unit increase	Illumina [2093892] (imputed)	N
1550	chr9	126555071	126555072	rs7861905	34050765	Zhang L	2021-05-29	J Clin Endocrinol Metab	Joint genome-wide association analyses identified 49 novel loci for age at natural menopause.	Age at menopause	181,219 European ancestry individuals	NA	9q33.3		rs7861905-C	0.09	2E-9		0.18	unit increase	Illumina [2398641] (imputed)	N
1550	chr9	126555987	126555988	rs183433444	25839716	Ng E	2015-04-02	Environ Res	Genome-wide association study of plasma levels of polychlorinated biphenyls disclose an association with the CYP2B6 gene in a population-based sample.	Polychlorinated biphenyl levels	922 European ancestry individuals	NA	9q33.3	NR	rs183433444-?		7E-7	(PCB74)	1.36	[0.83-1.89] unit decrease	Illumina [8736858] (imputed)	N
1550	chr9	126558809	126558810	rs1752165	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	9q33.3		rs1752165-?	NR	8E-11				NR [~ 8900000] (imputed)	N
1550	chr9	126586562	126586563	rs1752169	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	9q33.3	NR	rs1752169-C	0.7305	2E-9		0.0317	[0.021-0.042] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
1550	chr9	126590686	126590687	rs541160	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	9q33.3	NR	rs541160-C	NR	1E-9		0.023	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
1550	chr9	126596546	126596547	rs543070	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	9q33.3	DENND1A	rs543070-?	NR	3E-15		0.7739	[0.57-0.97] unit increase	Affymetrix [11100000] (imputed)	N
1550	chr9	126603988	126603989	rs7862092	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	9q33.3	NR	rs7862092-T	0.9187	2E-7	(Banks of the Superior Temporal Sulcus)	6.0855894	[3.78-8.4] unit increase	Affymetrix, Illumina [NR]	N
1551	chr9	126619232	126619233	rs9696009	30566500	Day F	2018-12-19	PLoS Genet	Large-scale genome-wide meta-analysis of polycystic ovary syndrome suggests shared genetic architecture for different diagnosis criteria.	Polycystic ovary syndrome	10,074 European ancestry cases, 103,164 European ancestry controls	NA	9q33.3	DENND1A	rs9696009-A	0.07	8E-11		0.202	[0.14-0.26] unit increase	Illumina [> 10000000] (imputed)	N
1551	chr9	126624380	126624381	rs600704	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	9q33.3		rs600704-?	NR	3E-16				NR [~ 8900000] (imputed)	N
1551	chr9	126634254	126634255	rs2670139	30718901	Howard DM	2019-02-04	Nat Neurosci	Genome-wide meta-analysis of depression identifies 102 independent variants and highlights the importance of the prefrontal brain regions.	Depression	118,811 European ancestry cases, 327,427 European ancestry controls, 127,552 cases, 233,763 controls	414,055 European ancestry cases, 892,299 European ancestry controls	9q33.3	NR	rs2670139-C	0.2391	2E-12		1.01833	[1.01-1.02]	NR [8098588] (imputed)	N
1551	chr9	126682067	126682068	rs7029033	34859065	Zhang F	2021-11-11	Front Cardiovasc Med	Shared Genetic Liability and Causal Associations Between Major Depressive Disorder and Cardiovascular Diseases.	Major depressive disorder or stroke (pleiotropy)	135,458 European ancestry MDD cases, 40,585 European ancestry stroke cases, 751,012 European ancestry controls	NA	9q33.3		rs7029033-?	NR	2E-8				NR [8243736]	N
1551	chr9	126682067	126682068	rs7029033	31926635	Coleman JRI	2019-11-01	Biol Psychiatry	The Genetics of the Mood Disorder Spectrum: Genome-wide Association Analyses of More Than 185,000 Cases and 439,000 Controls.	Bipolar disorder or major depressive disorder	164,933 European ancestry major depressive disorder cases, 20,352 European ancestry bipolar disorder cases, 439,741 European ancestry controls	NA	9q33.3	NR	rs7029033-T	NR	3E-8		1.04	[1.02-1.06]	NR [NR] (imputed)	N
1551	chr9	126682067	126682068	rs7029033	29700475	Wray NR	2018-04-26	Nat Genet	Genome-wide association analyses identify 44 risk variants and refine the genetic architecture of major depression.	Depression	135,458 European ancestry cases, 344,901 European ancestry controls	NA	9q33.3	DENND1A, LHX2	rs7029033-T	0.07	3E-8		1.05	[1.03-1.07]	NR [9622763] (imputed)	N
1551	chr9	126685897	126685898	rs12115299	27479909	Hyde CL	2016-08-01	Nat Genet	Identification of 15 genetic loci associated with risk of major depression in individuals of European descent.	Major depressive disorder	84,847 European ancestry cases, 241,266 European ancestry controls	45,773 European ancestry cases, 106,354 European ancestry controls	9q33.3	DENND1A	rs12115299-G	0.0693957	2E-6		0.0522	[0.029-0.076] unit increase	Illumina [1220000] (imputed)	N
1551	chr9	126691320	126691321	rs79740971	29378355	Stanne TM	2018-02-01	Thromb Haemost	A Genome-wide Study of Common and Rare Genetic Variants Associated with Circulating Thrombin Activatable Fibrinolysis Inhibitor.	Thrombin-activatable fibrinolysis inhibitor activation peptide	3,124 European ancestry individuals	NA	9q33.3	DENND1A, LHX2	rs79740971-A	0.017	4E-7		0.28	[0.17-0.39] unit decrease	Illumina [10000000] (imputed)	N
1551	chr9	126695769	126695770	rs10818894	24025145	Chung S	2013-09-11	Breast Cancer Res	A genome-wide association study of chemotherapy-induced alopecia in breast cancer patients.	Adverse response to chemotherapy in breast cancer (alopecia) (cyclophosphamide+doxorubicin+/-5FU)	64 Japanese ancestry cases, 27 Japanese ancestry controls	NA	9q33.3	DENND1A	rs10818894-G	0.70	2E-6	(Dominant)	10.4	[3.56-30.1]	Illumina [555600]	N
1551	chr9	126708174	126708175	rs7042625	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	9q33.3	NR	rs7042625-?	NR	3E-10				Affymetrix [~ 8270000] (imputed)	N
1551	chr9	126714307	126714308	rs4838083	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9q33.3		rs4838083-?	NR	7E-10				NR [~ 8900000] (imputed)	N
1551	chr9	126718769	126718770	rs10986157	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	9q33.3	Intergenic	rs10986157-T	0.7371	2E-10	(MTAG)	0.0129	[0.009-0.0168] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1551	chr9	126718769	126718770	rs10986157	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	9q33.3	Intergenic	rs10986157-C	0.2629	5E-9		0.013	[0.0087-0.0173] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1551	chr9	126718769	126718770	rs10986157	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	9q33.3	Intergenic	rs10986157-T	0.7367	2E-10	(MTAG)	0.0119	[0.0082-0.0156] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1552	chr9	126783846	126783847	rs2075064	23966867	Liu CT	2013-08-15	PLoS Genet	Genome-wide association of body fat distribution in African ancestry populations suggests new loci.	Waist circumference	Up to 23,564 African American individuals	Up to 10,027 African American individuals	9q33.3	LHX2, DENND1A	rs2075064-T	0.13	2E-8	(BMI_pooled)	0.07	[0.05-0.09] unit decrease	Affymetrix, Illumina [3200000] (imputed)	N
1552	chr9	126790606	126790607	rs917783	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	9q33.3	LHX2	rs917783-C	0.4546	3E-64		1.138	NR	Affymetrix [9154080] (imputed)	N
1552	chr9	126808005	126808006	rs58979150	29662168	Hysi PG	2018-04-16	Nat Genet	Genome-wide association meta-analysis of individuals of European ancestry identifies new loci explaining a substantial fraction of hair color variation and heritability.	Hair color	290,891 European ancestry individuals	27,865 European ancestry individuals	9q33.3	LHX2	rs58979150-T	0.108	8E-92		0.085	[0.077-0.093] unit increase	Affymetrix, Illumina [at least 560000] (imputed)	N
1552	chr9	126808020	126808021	rs16936765	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	9q33.3	NR	rs16936765-G	0.183232	4E-11		0.026376	[0.019-0.034] unit increase	NR [19129689] (imputed)	N
1552	chr9	126808787	126808788	rs10114314	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	9q33.3	LHX2	rs10114314-?	NR	1E-20		1.1414222	NR	Affymetrix [9154080] (imputed)	N
1552	chr9	126811295	126811296	rs12344562	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	9q33.3	LHX2	rs12344562-C	0.184	3E-78		1.199	NR	Affymetrix [9154080] (imputed)	N
1552	chr9	126814578	126814579	rs4838097	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	9q33.3		rs4838097-?	NR	3E-134				NR [~ 8900000] (imputed)	N
1552	chr9	126828513	126828514	rs7851998	30697902	Hernandez-Pacheco N	2019-01-29	Clin Exp Allergy	Genome-wide association study of inhaled corticosteroid response in admixed children with asthma.	Asthma exacerbations in inhaled corticosteroid treatment	854 Hispanic/Latino cases, 493 African American cases	1,697 European ancestry cases	9q33.3	LHX2, NEK6	rs7851998-G	0.809	4E-6	(Hispanic/Latino+AfricanAmerican)	1.79	[1.39-2.27]	Affymetrix [~ 8700000] (imputed)	N
1552	chr9	126828513	126828514	rs7851998	30697902	Hernandez-Pacheco N	2019-01-29	Clin Exp Allergy	Genome-wide association study of inhaled corticosteroid response in admixed children with asthma.	Asthma exacerbations in inhaled corticosteroid treatment	854 Hispanic/Latino cases, 493 African American cases	1,697 European ancestry cases	9q33.3	LHX2	rs7851998-G	0.809	3E-6	(Hispanic/Latino)	1.92	[1.45-2.50]	Affymetrix [~ 8700000] (imputed)	N
1552	chr9	126833497	126833498	rs11792867	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	9q33.3	Intergenic	rs11792867-G	0.4643	2E-10		0.0124	[0.0085-0.0163] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1552	chr9	126833791	126833792	rs11788926	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	9q33.3	Intergenic	rs11788926-A	0.4667	1E-9	(MTAG)	0.011	[0.0075-0.0145] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1552	chr9	126838609	126838610	rs7871426	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	9q33.3	NR	rs7871426-?	NR	6E-24				Affymetrix [NR]	N
1552	chr9	126864195	126864196	rs10760321	26416764	Day FR	2015-09-29	Nat Commun	Causal mechanisms and balancing selection inferred from genetic associations with polycystic ovary syndrome.	Polycystic ovary syndrome	5,184 European ancestry cases, 82,759 European ancestry controls	374 European ancestry cases, 92,681 European ancestry controls, 1,671 cases, 6,205 controls	9q33.3	DENND1A	rs10760321-A	0.71	1E-6		1.11	[1.07-1.16]	Illumina [~ 9000000] (imputed)	N
1553	chr9	126926106	126926107	rs2807580	20125193	Cirulli ET	2010-02-03	Eur J Hum Genet	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American individuals, up to 74 South Asian ancestry individuals	NA	9q33.3	NEK6	rs2807580-?	NR	3E-6	(Digit Symbol)			Illumina [up to 563855]	N
1553	chr9	126953639	126953640	rs111873027	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	9q33.3	NR	rs111873027-?	NR	2E-6	(EA)	0.9778	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1553	chr9	126971352	126971353	rs56856693	33382417	Batai K	2020-12-31	J Nutr	Genome-Wide Association Study of Response to Selenium Supplementation and Circulating Selenium Concentrations in Adults of European Descent.	Response to selenium supplementation (change in plasma selenium concentration)	428 European ancestry individuals	NA	9q33.3	NK6	rs56856693-?	0.156	4E-7		18.5	[11.43-25.57] unit increase	Illumina [7663546] (imputed)	N
1553	chr9	126973872	126973873	rs72759273	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	9q33.3	NEK6	rs72759273-G	0.1917	5E-14		1.076	NR	Affymetrix [9154080] (imputed)	N
1553	chr9	126973872	126973873	rs72759273	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	9q33.3	NEK6	rs72759273-A	0.194462	5E-8		5.46	z score increase	NR [10847151] (imputed)	N
1553	chr9	126985762	126985763	rs72759285	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	9q33.3		rs72759285-G	NR	5E-14		0.0198	[0.015-0.025] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
1553	chr9	126985762	126985763	rs72759285	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	9q33.3		rs72759285-G	NR	3E-19		0.0229	[0.018-0.028] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
1553	chr9	126985762	126985763	rs72759285	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	9q33.3		rs72759285-G	0.201862	2E-59		0.0449115	[0.039-0.05] unit increase	Affymetrix [93095623] (imputed)	N
1553	chr9	126985857	126985858	rs72759286	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	9q33.3		rs72759286-C	0.198659	9E-16		0.022411782	[0.017-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
1553	chr9	126985857	126985858	rs72759286	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	9q33.3		rs72759286-C	0.198668	7E-18		0.024018928	[0.019-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
1553	chr9	126985857	126985858	rs72759286	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q33.3	NR	rs72759286-C	0.193448	7E-22				Affymetrix, Illumina [23114412] (imputed)	N
1553	chr9	126985857	126985858	rs72759286	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	9q33.3	NR	rs72759286-C	0.198539	3E-22		0.023554	[0.019-0.028] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
1553	chr9	126990278	126990279	rs56073786	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	9q33.3		rs56073786-A	0.796	1E-14				Affymetrix [10369434] (imputed)	N
1553	chr9	126991184	126991185	rs10818930	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	9q33.3		rs10818930-?	NR	4E-49				NR [~ 8900000] (imputed)	N
1553	chr9	126991184	126991185	rs10818930	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	9q33.3	NEK6	rs10818930-?	NR	1E-16		1.091703	NR	Affymetrix [9154080] (imputed)	N
1553	chr9	126992063	126992064	rs56395295	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	9q33.3	NR	rs56395295-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
1553	chr9	126997049	126997050	rs7863470	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	9q33.3		rs7863470-G	0.197771	1E-28		0.030980973	[0.026-0.036] unit increase	Affymetrix [93095623] (imputed)	N
1553	chr9	126997049	126997050	rs7863470	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q33.3	NR	rs7863470-G	0.20472	7E-34				Affymetrix, Illumina [23467995] (imputed)	N
1553	chr9	126999152	126999153	rs10986284	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Autoimmune traits	approximately 459,000 European ancestry individuals	NA	9q33.3		rs10986284-?	NR	9E-8				NR [~ 8900000] (imputed)	N
1553	chr9	127000095	127000096	rs3949752	31712607	Nudel R	2019-11-11	Transl Psychiatry	A large-scale genomic investigation of susceptibility to infection and its association with mental disorders in the Danish population.	Hospital contact for infections	21,728 Danish ancestry cases with psychiatric disorders, 6,744 Danish ancestry cases, 24,161 Danish ancestry controls with psychiatric disorders, 12,901 Danish ancestry controls	NA	9q33.3		rs3949752-A	NR	6E-7		1.0639	[1.04-1.09]	Illumina [11600722] (imputed)	N
1554	chr9	127009394	127009395	rs55793580	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	9q33.3	intergenic	rs55793580-T	0.1578	1E-17		0.04205287	[0.032-0.052] unit increase	Affymetrix [~ 2500000] (imputed)	N
1554	chr9	127009394	127009395	rs55793580	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	9q33.3	intergenic	rs55793580-T	0.1578	8E-9		0.02848996	[0.019-0.038] unit increase	Affymetrix [~ 2500000] (imputed)	N
1554	chr9	127009394	127009395	rs55793580	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	9q33.3	intergenic	rs55793580-T	0.1578	3E-15		0.0390012	[0.029-0.049] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1554	chr9	127015439	127015440	rs10818937	30367059	Teumer A	2018-10-26	Nat Commun	Genome-wide analyses identify a role for SLC17A4 and AADAT in thyroid hormone regulation.	Free thyroxine concentration	49,269 European ancestry individuals	up to 22,383 European ancestry individuals	9q33.3	NEK6	rs10818937-T	0.31	5E-11		0.039	[0.027-0.051] unit decrease	Affymetrix, Illumina [8048941] (imputed)	N
1554	chr9	127016270	127016271	rs10986291	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	9q33.3	NEK6	rs10986291-T	0.335036	1E-8		1.0367836	[1.02396280128685-1.04976498247369]	NR [9572556] (imputed)	N
1554	chr9	127029735	127029736	rs12379417	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	9q33.3	NEK6	rs12379417-G	0.634239	9E-14		0.0143401	[0.011-0.018] unit decrease	NR [13737936] (imputed)	N
1554	chr9	127029735	127029736	rs12379417	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	9q33.3		rs12379417-?	NR	6E-10		0.0136302	[0.0094-0.0179] unit decrease	Affymetrix [20259828] (imputed)	N
1554	chr9	127032606	127032607	rs1045774	32769997	Zhou W	2020-08-07	Nat Commun	GWAS of thyroid stimulating hormone highlights pleiotropic effects and inverse association with thyroid cancer.	Thyroid stimulating hormone levels	119,715 European ancestry individuals	NA	9q33.3	NEK6	rs1045774-G	0.383796998131877	4E-12		0.0323	[0.023-0.041] SD increase	Illumina [22400000] (imputed)	N
1554	chr9	127034351	127034352	rs4838147	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	9q33.3	NR	rs4838147-G	0.153967	4E-34		0.031752	[0.027-0.037] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
1554	chr9	127044134	127044135	rs7861040	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	9q33.3	NEK6	rs7861040-C	0.3661	7E-12		0.1253	[0.089-0.161] unit decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1554	chr9	127056212	127056213	rs56141370	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	9q33.3	NR	rs56141370-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
1554	chr9	127056212	127056213	rs56141370	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	9q33.3		rs56141370-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1554	chr9	127060430	127060431	rs944340	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	9q33.3	NR	rs944340-?	NR	9E-9				Affymetrix [~ 8270000] (imputed)	N
1554	chr9	127060430	127060431	rs944340	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	9q33.3	NA	rs944340-T	0.4162	6E-11		0.0112	[0.0079-0.0145] unit increase	NR [~ 27400000] (imputed)	N
1554	chr9	127069752	127069753	rs3758212	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	9q33.3		rs3758212-?	NR	1E-11				NR [~ 8900000] (imputed)	N
1554	chr9	127071492	127071493	rs10986311	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	9q33.3	NEK6	rs10986311-C	0.37	2E-12				NR [> 9500000] (imputed)	N
1554	chr9	127071492	127071493	rs10986311	27723757	Jin Y	2016-11-01	Nat Genet	Genome-wide association studies of autoimmune vitiligo identify 23 new risk loci and highlight key pathways and regulatory variants.	Vitiligo	2,853 European ancestry cases and 37,405 European ancestry controls	1,827 European ancestry cases and 2,181 European ancestry controls	9q33.3	NEK6	rs10986311-C	0.3677	1E-8		1.152	[1.10-1.21]	Illumina [8966411] (imputed)	N
1554	chr9	127075020	127075021	rs2274780	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	9q33.3		rs2274780-C	NR	3E-9		0.0513	[0.034-0.068] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1554	chr9	127075020	127075021	rs2274780	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	9q33.3	NEK6	rs2274780-C	0.470695	5E-9		0.053449966	[0.036-0.071] unit increase	Affymetrix [7288503] (imputed)	N
1554	chr9	127084073	127084074	rs2274782	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	9q33.3	NA	rs2274782-T	0.3596	3E-8		0.0098	[0.0063-0.0133] unit increase	NR [~ 27400000] (imputed)	N
1554	chr9	127092886	127092887	rs3780204	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	9q33.3	NEK6	rs3780204-C	0.3389	1E-9		0.0108315	[0.0073-0.0143] unit decrease	Affymetrix [11880941] (imputed)	N
1554	chr9	127092886	127092887	rs3780204	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	9q33.3		rs3780204-?	NR	3E-7				NR [~ 8900000] (imputed)	N
1554	chr9	127093901	127093902	rs10986320	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	9q33.3	NR	rs10986320-C	0.3735	9E-9		1.036	[1.024-1.048]	Affymetrix [15688218] (imputed)	N
1554	chr9	127093901	127093902	rs10986320	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	9q33.3		rs10986320-?	NR	7E-9				NR [~ 8900000] (imputed)	N
1554	chr9	127095038	127095039	rs753788	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	9q33.3		rs753788-T	NR	3E-9		0.0103	[0.007-0.0136] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
1554	chr9	127123779	127123780	rs79967707	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	9q33.3		rs79967707-?	NR	4E-10				NR [~ 8900000] (imputed)	N
1554	chr9	127130477	127130483	rs57096603	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hypothyroidism	30,155 European ancestry cases, 379,986 European ancestry controls, 1,114 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	9q33.3		rs57096603-T	NR	1E-8		0.0574	[0.038-0.077] unit increase	Affymetrix, Illumina [25801083] (imputed)	N
1555	chr9	127177160	127177161	rs4574	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	9q33.3		rs4574-A	0.5618	7E-19		0.18581644	[0.14-0.23] mmHg increase	Affymetrix, Illumina [242865] (imputed)	N
1555	chr9	127177160	127177161	rs4574	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	9q33.3		rs4574-A	0.5617	1E-15		0.11557518	[0.085-0.146] mmHg increase	Affymetrix, Illumina [242866] (imputed)	N
1555	chr9	127178265	127178266	rs10760361	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	9q33.3	PSMB7	rs10760361-G	0.65	7E-9		1.04	[1.03-1.06]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1555	chr9	127182292	127182293	rs10818962	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	9q33.3		rs10818962-?	NR	3E-11				NR [~ 8900000] (imputed)	N
1555	chr9	127188173	127188174	rs12683568	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	9q33.3		rs12683568-?	NR	8E-10				NR [~ 8900000] (imputed)	N
1555	chr9	127188228	127188230	rs35115423	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	9q33.3		rs35115423-A	NR	5E-19		0.0219	[0.017-0.027] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1555	chr9	127188228	127188230	rs35115423	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	9q33.3		rs35115423-A	NR	3E-10		0.0159	[0.011-0.021] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
1555	chr9	127188228	127188230	rs35115423	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	9q33.3		rs35115423-A	0.651997	1E-12		0.016796183	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1555	chr9	127188228	127188230	rs35115423	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	9q33.3	intergenic	rs35115423-A	0.65	2E-9		0.02369532	[0.016-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1555	chr9	127189344	127189345	rs10739649	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q33.3	NR	rs10739649-G	0.676603	2E-21				Affymetrix, Illumina [24588908] (imputed)	N
1555	chr9	127189344	127189345	rs10739649	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	9q33.3	NR	rs10739649-G	0.664979	8E-24		0.019764	[0.016-0.024] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1555	chr9	127189914	127189915	rs10818963	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	9q33.3	NR	rs10818963-A	0.652654	2E-10		0.0150790615	[0.01-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1555	chr9	127189914	127189915	rs10818963	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	9q33.3	NR	rs10818963-A	0.65264	2E-9		0.014259851	[0.0096-0.0189] unit decrease	Affymetrix [93095623] (imputed)	N
1555	chr9	127189914	127189915	rs10818963	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	9q33.3	intergenic	rs10818963-A	0.6524	7E-10		0.02427277	[0.017-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1555	chr9	127191231	127191232	rs10986338	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	9q33.3		rs10986338-A	NR	4E-17		0.0174	[0.013-0.022] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1555	chr9	127191231	127191232	rs10986338	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	9q33.3	NR	rs10986338-A	0.651337	2E-16		0.019079203	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1555	chr9	127191231	127191232	rs10986338	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	9q33.3		rs10986338-A	0.651426	2E-21		0.022388238	[0.018-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1555	chr9	127191231	127191232	rs10986338	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	9q33.3		rs10986338-A	0.651462	4E-23		0.023283333	[0.019-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
1555	chr9	127191231	127191232	rs10986338	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	9q33.3	NR	rs10986338-A	0.649839	2E-17		0.016612	[0.013-0.02] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1555	chr9	127191231	127191232	rs10986338	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	9q33.3		rs10986338-?	NR	6E-15				NR [~ 8900000] (imputed)	N
1555	chr9	127191539	127191540	rs12378064	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q33.3	NR	rs12378064-T	0.573011	5E-18				Affymetrix, Illumina [24649327] (imputed)	N
1555	chr9	127204711	127204712	rs11794849	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels	18,590 European ancestry individuals	NA	9q33.3		rs11794849-?	NR	9E-6		0.06	[0.035-0.085] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1555	chr9	127250500	127250501	rs4838192	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	9q33.3	NR5A1	rs4838192-T	0.5128	7E-8		0.00912265	[0.0058-0.0124] unit increase	Affymetrix [11880941] (imputed)	N
1555	chr9	127251779	127251780	rs117724125	28957384	Kim SK	2017-09-28	PLoS One	Two genetic loci associated with ankle injury.	Ankle injury	1,421 European ancestry cases, 154 Hispanic/Latino cases, 121 East Asian ancestry cases, 81,843 European ancestry controls, 8,406 Hispanic/Latino controls, 7,397 East Asian ancestry controls	NA	9q33.3	NR	rs117724125-T	NR	4E-6		1.6205		Affymetrix [8183964] (imputed)	N
1555	chr9	127255447	127255448	rs2297605	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	9q33.3	NR	rs2297605-A	0.459	2E-8		0.00768614	[0.005-0.0104] unit increase	NR [~ 9732723] (imputed)	N
1555	chr9	127255447	127255448	rs2297605	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	9q33.3		rs2297605-?	NR	2E-18				NR [~ 8900000] (imputed)	N
1556	chr9	127327762	127327763	rs10114038	24049095	Chen Z	2013-09-18	J Med Genet	Genome-wide association study of sex hormones, gonadotropins and sex hormone-binding protein in Chinese men.	Follicle stimulating hormone levels	1,999 Han Chinese ancestry individuals	1,496 East Asian ancestry individuals	9q33.3	NR	rs10114038-?	0.18	2E-6	(FSH)			Illumina [709211]	N
1556	chr9	127373462	127373463	rs4072705	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Menarche (age at onset)	76,831 European ancestry individuals	NA	9q33.3	NR6A1	rs4072705-?	NR	1E-8		0.025	[0.033-0.016] unit decrease	Illumina [12039492]	N
1557	chr9	127495972	127495973	rs151265161	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	9q33.3		rs151265161-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1557	chr9	127510668	127510669	rs78427461	28054174	Leslie EJ	2017-01-04	Hum Genet	Genome-wide meta-analyses of nonsyndromic orofacial clefts identify novel associations between FOXE1 and all orofacial clefts, and TP63 and cleft lip with or without cleft palate.	Orofacial clefts	83 Asian ancestry cases, 1,445 Asian ancestry case-parent trios, 161 Asian ancestry controls, 208 European ancestry cases, 1,284 European ancestry case-parent trios, 835 European ancestry controls, 610 Latino or African cases, 663 Latino or African case-parent trios, 704 Latino or African controls, 35 case-parent trios.	NA	9q33.3	Intergenic	rs78427461-?	NR	8E-6	(Asian)	1.41	[1.23-1.62]	Illumina [6090031] (imputed)	N
1558	chr9	127561722	127561723	rs79134766	30823506	Hong EP	2019-02-25	J Clin Med	Genomic Variations in Susceptibility to Intracranial Aneurysm in the Korean Population.	Intracranial aneurysm	250 Korean ancestry cases, 296 Korean ancestry controls	NA	9q33.3	OLFML2A	rs79134766-G	0.63	2E-19		7.142857	[4.76-11.11]	Affymetrix [508192]	N
1558	chr9	127562787	127562788	rs750691	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9q33.3		rs750691-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1558	chr9	127591402	127591403	rs114635803	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	9q33.3	NR	rs114635803-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
1558	chr9	127591472	127591473	rs117595678	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	9q33.3		rs117595678-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1559	chr9	127746647	127746648	rs12001999	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	9q33.3	NR	rs12001999-C	NR	1E-9		0.0173	[0.012-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
1560	chr9	127820380	127820380	rs34425131	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	9q33.3		rs34425131-TA	NR	4E-8		0.0139	[0.009-0.0188] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
1560	chr9	127825504	127825505	rs637473	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking cessation	450,129 European ancestry individuals	NA	9q33.3	SCAI	rs637473-T		4E-9		1.03	[NR]	Affymetrix [up to 79000000] (imputed)	N
1560	chr9	127840243	127840243	rs11458422	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	9q33.3	SCAI	rs11458422-AC	0.8625	2E-14		0.2791	[0.21-0.35] mmHg decrease	Affymetrix [NR] (imputed)	N
1560	chr9	127851930	127851931	rs72765272	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Worry too long after an embarrassing experience	367,725 European ancestry individuals	NA	9q33.3	SCAI	rs72765272-A	0.1317	7E-10		6.16	z score increase	NR [10847151] (imputed)	N
1560	chr9	127870795	127870796	rs191242857	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	9q33.3		rs191242857-G	0.663	9E-19		0.012	[0.01-0.014] unit increase	NR [NR] (imputed)	N
1560	chr9	127873113	127873114	rs72765283	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	9q33.3		rs72765283-?	NR	5E-10				NR [~ 8900000] (imputed)	N
1560	chr9	127891017	127891018	rs11793462	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	9q33.3		rs11793462-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1560	chr9	127891039	127891040	rs11789472	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	9q33.3		rs11789472-?	NR	4E-7				NR [~ 8900000] (imputed)	N
1560	chr9	127893863	127893864	rs10986578	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	9q33.3	NR	rs10986578-?		5E-9				NR [7428630] (imputed)	N
1560	chr9	127896553	127896554	rs7021901	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	9q33.3	NR	rs7021901-T	0.444390423695237	1E-8		0.0052972496	[0.0035-0.0071] unit decrease	NR [NR]	N
1560	chr9	127896553	127896554	rs7021901	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	9q33.3	NR	rs7021901-T	0.444390423695237	9E-9		0.008625301	[0.0057-0.0116] unit decrease	NR [NR]	N
1560	chr9	127896553	127896554	rs7021901	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	9q33.3	NR	rs7021901-T	0.444390423695237	1E-8		0.0055108787	[0.0036-0.0074] unit decrease	NR [NR]	N
1560	chr9	127900634	127900635	rs149411756	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	9q33.3		rs149411756-G	NR	3E-16		0.0256	[0.02-0.032] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
1560	chr9	127900995	127900996	rs72765298	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Pulse pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	9q33.3	SCAI	rs72765298-T	0.87	3E-14		0.374	[0.28-0.47] unit decrease	Affymetrix [~ 9800000] (imputed)	N
1560	chr9	127917256	127917257	rs12378015	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking cessation (MTAG)	up to 820,192 European ancestry individuals	NA	9q33.3	NR	rs12378015-A	0.3	5E-16		0.013593	[0.01-0.017] unit decrease	NR [9732723] (imputed)	N
1560	chr9	127917256	127917257	rs12378015	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking cessation	up to 547,219 European ancestry individuals	NA	9q33.3	NR	rs12378015-A	0.3	8E-11		0.027659567	[0.019-0.036] unit decrease	NR [~ 10000000] (imputed)	N
1560	chr9	127919975	127919975	rs11375288	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	9q33.3		rs11375288-GT	0.96214	7E-6		0.078685	[0.044-0.113] unit decrease	Affymetrix [15580782] (imputed)	N
1561	chr9	127937745	127937746	rs139703184	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	9q33.3	PPP6C	rs139703184-T		5E-7		0.275	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1561	chr9	127937745	127937746	rs139703184	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	9q33.3	PPP6C	rs139703184-T		1E-6		0.251	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1561	chr9	127937745	127937746	rs139703184	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	9q33.3	PPP6C	rs139703184-T		1E-13		0.271	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1561	chr9	127943337	127943338	rs16927927	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	9q33.3	PPP6C	rs16927927-C	0.8471	7E-10		0.2817	[0.19-0.37] mmHg decrease	Affymetrix [NR] (imputed)	N
1561	chr9	127957069	127957070	rs359584	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MANF	5,363 Icelandic ancestry individuals	NA	9q33.3		rs359584-G	0.4655	1E-18		0.168296	[0.13-0.21] unit increase	Illumina [7506463] (imputed)	N
1561	chr9	127980922	127980923	rs17253010	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Worry too long after an embarrassing experience	367,725 European ancestry individuals	NA	9q33.3	NR	rs17253010-A	0.1453	1E-9		6.09	z score increase	NR [10847151] (imputed)	N
1561	chr9	127987508	127987509	rs365552	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Cigarettes smoked per day (MTAG)	up to 403,928 European ancestry individuals	NA	9q33.3	NR	rs365552-A	0.536	1E-8		0.01243	[0.0081-0.0167] unit increase	NR [9732723] (imputed)	N
1561	chr9	128004023	128004024	rs391957	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Anxiety	at least 23,606 European ancestry cases, at least 113,351 European ancestry controls	624,615 European ancestry cases, 1,310,854 European ancestry controls	9q33.3	RP11, 65N13.8	rs391957-T	0.3807	1E-9		0.014085177	[0.0089-0.0193] unit decrease	NR [9417325] (imputed)	N
1561	chr9	128004023	128004024	rs391957	31972866	Nagel M	2020-01-23	Acta Psychiatr Scand	Genome-wide association study of the sensitivity to environmental stress and adversity (SESA) neuroticism cluster.	Sensitivity to environmental stress and adversity	351,827 European ancestry individuals	NA	9q33.3	NR	rs391957-T	NR	2E-10		0.01506	NR unit decrease	NR [7259579]	N
1561	chr9	128014238	128014240	rs200913165	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	9q33.3	NR	rs200913165-A	0.460627	4E-10		0.043551	[0.03-0.057] unit decrease	Affymetrix [17914406] (imputed)	N
1561	chr9	128014634	128014635	rs828104	33209044	Ahn Y	2020-11-12	Diabetes Metab Syndr Obes	Identification of Genetic Variants for Female Obesity and Evaluation of the Causal Role of Genetically Defined Obesity in Polycystic Ovarian Syndrome.	Body mass index	4,658 Korean ancestry females	5,295 Korean ancestry females	9q33.3	NR	rs828104-G	0.41	6E-7		0.225	[0.14-0.31] unit increase	Affymetrix [NR] (imputed)	N
1561	chr9	128017715	128017716	rs491283	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking initiation	842,717 European ancestry individuals	NA	9q33.3	HSPA5, GAPVD1	rs491283-C		9E-9		1.021	[NR]	Affymetrix [up to 79000000] (imputed)	N
1561	chr9	128017715	128017716	rs491283	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	9q33.3	NR	rs491283-C	0.48	8E-16		0.00893272	[0.0068-0.0111] unit increase	NR [9732723] (imputed)	N
1561	chr9	128017715	128017716	rs491283	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	9q33.3	NR	rs491283-C	0.481	2E-10		0.00967516	[0.0067-0.0126] unit decrease	NR [9732723] (imputed)	N
1561	chr9	128052443	128052444	rs141299329	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	9q33.3	NR	rs141299329-?	NR	5E-6		4.58	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1562	chr9	128067649	128067650	rs570987309	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	9q33.3	GAPVD1	rs570987309-G	0.4094	2E-21		0.0187	[0.015-0.023] unit decrease	Affymetrix [18391927] (imputed)	N
1562	chr9	128073096	128073097	rs1759433	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	9q33.3	NR	rs1759433-A	0.48	2E-9		0.015364719	[0.01-0.02] unit increase	NR [~ 10000000] (imputed)	N
1562	chr9	128093265	128093265	rs35123950	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	9q33.3		rs35123950-AT	NR	3E-8		0.0105	[0.0068-0.0142] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1562	chr9	128097076	128097076	rs35307761	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	9q33.3	GAPVD1	rs35307761-TA	0.461981	5E-12		0.01573248	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1562	chr9	128116816	128116817	rs937482	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	9q33.3		rs937482-G	NR	5E-9		0.0094	[0.0063-0.0125] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
1562	chr9	128131783	128131784	rs62581402	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Worry too long after an embarrassing experience	367,725 European ancestry individuals	NA	9q33.3	NR	rs62581402-A	0.146524	4E-8		5.5	z score decrease	NR [10847151] (imputed)	N
1562	chr9	128134033	128134034	rs7870475	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Smoking status (ever vs never smokers)	336,066 British ancestry individuals	NA	9q33.3	NR	rs7870475-C	0.4743	6E-10		1.032	[1.02-1.04]	NR [8968716] (imputed)	N
1562	chr9	128134033	128134034	rs7870475	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking initiation (ever regular vs never regular)	up to 433,216 European ancestry individuals	NA	9q33.3	GAPVD1	rs7870475-C	0.475	3E-11		0.0152	[0.011-0.02] unit increase	Illumina [~ 250000] (imputed)	N
1562	chr9	128134033	128134034	rs7870475	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	9q33.3	MAPKAP1	rs7870475-T	0.5251	3E-10		0.012688204	[0.0087-0.0166] unit decrease	Affymetrix [11514654] (imputed)	N
1562	chr9	128134331	128134332	rs2841329	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	9q33.3	NR	rs2841329-A	0.458144	2E-9		0.0411896	[0.028-0.055] unit decrease	Affymetrix [17914406] (imputed)	N
1562	chr9	128137417	128137418	rs5015933	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	9q33.3		rs5015933-C	NR	2E-12		0.0116	[0.0085-0.0147] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1562	chr9	128137417	128137418	rs5015933	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	9q33.3	GAPVD1, MAPKAP1	rs5015933-C	0.54	6E-10	(Japanese)	0.021	[0.015-0.027] unit decrease	Illumina [6108953] (imputed)	N
1562	chr9	128137417	128137418	rs5015933	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	9q33.3	GAPVD1, MAPKAP1	rs5015933-C	0.47	6E-7		0.013	[0.0071-0.0189] unit decrease	Illumina [6108953] (imputed)	N
1562	chr9	128137668	128137669	rs3104546	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	9q33.3		rs3104546-C	0.540119	4E-10		0.0170763	[0.012-0.022] unit decrease	Illumina [13479924] (imputed)	N
1562	chr9	128137668	128137669	rs3104546	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	163,835 East Asian ancestry individuals	NA	9q33.3		rs3104546-C	0.540413	2E-8		0.0181165	[0.012-0.024] unit decrease	Illumina [13479178] (imputed)	N
1562	chr9	128144476	128144477	rs7020491	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	9q33.3		rs7020491-T	NR	3E-10		0.0119	[0.0082-0.0156] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1562	chr9	128163131	128163132	rs1566362	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	9q33.3		rs1566362-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1562	chr9	128169169	128169170	rs34983978	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	9q33.3		rs34983978-G	0.65	8E-12		0.008	[0.006-0.01] unit decrease	NR [NR] (imputed)	N
1562	chr9	128174254	128174255	rs146271698	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris color (b* coordinate)	329 South Asian ancestry individuals		9q33.3	intergenic	rs146271698-T	0.013	2E-6		1.829	[1.08-2.57] unit decrease	Illumina [640625] (imputed)	N
1562	chr9	128178801	128178802	rs148156408	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	9q33.3	NR	rs148156408-?	NR	2E-6		4.77	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1562	chr9	128178906	128178907	rs7861963	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental extreme longevity (95 years and older)	1,339 middle-aged British cases, 40,934 middle-aged British controls	NA	9q33.3	NR	rs7861963-?	NR	4E-7		0.0164	[0.01-0.023] unit decrease	Affymetrix [9658292] (imputed)	N
1563	chr9	128193455	128193456	rs1250505	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls, 49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	9q33.3		rs1250505-T	NR	1E-11		0.0406	[0.029-0.052] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1563	chr9	128193455	128193456	rs1250505	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls	NA	9q33.3	MAPKAP1	rs1250505-T	0.422789	1E-8		0.046380002	[0.03-0.062] unit decrease	Affymetrix [7288503] (imputed)	N
1563	chr9	128193455	128193456	rs1250505	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	9q33.3		rs1250505-?	NR	2E-13				NR [~ 8900000] (imputed)	N
1563	chr9	128195656	128195657	rs1268539	35043453	Qi G	2022-01-18	Genet Epidemiol	Genome-wide association studies of 27 accelerometry-derived physical activity measurements identified novel loci and genetic mechanisms.	Physical activity (Total log acceleration)	88,411 European ancestry individuals	NA	9q33.3		rs1268539-A	0.419	1E-10		0.03	unit increase	Affymetrix [8951705] (imputed)	N
1563	chr9	128195656	128195657	rs1268539	35043453	Qi G	2022-01-18	Genet Epidemiol	Genome-wide association studies of 27 accelerometry-derived physical activity measurements identified novel loci and genetic mechanisms.	Light-intensity physical activity duration	88,411 European ancestry individuals	NA	9q33.3		rs1268539-A	0.419	3E-10		0.03	unit increase	Affymetrix [8951705] (imputed)	N
1563	chr9	128195656	128195657	rs1268539	34753499	Hanscombe KB	2021-11-09	Genome Med	The genetic case for cardiorespiratory fitness as a clinical vital sign and the routine prescription of physical activity in healthcare.	Physical activity	89,683 European ancestry individuals	NA	9q33.3		rs1268539-C	0.58	2E-8		0.214	[0.14-0.29] unit decrease	Affymetrix [8918919] (imputed)	N
1563	chr9	128199872	128199873	rs1129	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9q33.3		rs1129-?	NR	1E-15				NR [~ 8900000] (imputed)	N
1563	chr9	128207716	128207717	rs907500	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	9q33.3	MAPKAP1	rs907500-T	NR	8E-6	(women)	0.0252755	[0.014-0.036] unit decrease	Illumina [13520550] (imputed)	N
1563	chr9	128208233	128208234	rs10115550	29478026	Shahin MH	2018-02-24	J Am Heart Assoc	Genome-Wide Association Approach Identified Novel Genetic Predictors of Heart Rate Response to ?-Blockers.	Heart rate response to beta blockers (atenolol monotherapy)	228 European American hypertensive individuals, 146 African American hypertensive individuals	NA	9q33.3	NR	rs10115550-C	0.84	3E-6	(AA)	4.48	[2.66-6.3] bpm decrease	Illumina [at least 1100000] (imputed)	N
1563	chr9	128221685	128221686	rs199955511	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	9q33.3		rs199955511-T	NR	2E-11		0.0116	[0.0083-0.0149] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1563	chr9	128233505	128233506	rs7018948	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Ruminococcus belonging to family Lachnospiraceae)	1,068 Japanese ancestry individuals	NA	9q33.3	MAPKAP1	rs7018948-A	0.15	2E-6	(male)	0.295	[0.17-0.42] unit decrease	Illumina [6380737] (imputed)	N
1563	chr9	128241413	128241414	rs2416963	30531941	Doherty A	2018-12-10	Nat Commun	GWAS identifies 14 loci for device-measured physical activity and sleep duration.	Sleep duration	91,105 European ancestry individuals	NA	9q33.3	MAPKAP1	rs2416963-C	0.589	2E-10		0.03	[0.02-0.04] SD units increase	NR [9926106] (imputed)	N
1563	chr9	128251024	128251025	rs10117812	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	9q33.3	MAPKAP1	rs10117812-G	0.697	1E-7		0.0200714	[0.013-0.027] unit increase	Illumina [13519193] (imputed)	N
1563	chr9	128251024	128251025	rs10117812	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	9q33.3	MAPKAP1	rs10117812-G	0.697	4E-7		0.0173531	[0.011-0.024] unit increase	Illumina [13520550] (imputed)	N
1563	chr9	128251024	128251025	rs10117812	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	9q33.3	MAPKAP1	rs10117812-G	NR	2E-6		0.0191922	[0.011-0.027] unit increase	Illumina [13520550] (imputed)	N
1563	chr9	128278738	128278739	rs10739663	27798624	Eppinga RN	2016-10-31	Nat Genet	Identification of genomic loci associated with resting heart rate and shared genetic predictors with all-cause mortality.	Resting heart rate	127,919 European ancestry individuals, 2,478 Asian ancestry individuals, 1,734 Black individuals, 684 Mixed ancestry individuals, 1,436 individuals	130,795 European ancestry individuals	9q33.3	MAPKAP1	rs10739663-G	0.45	1E-15		0.2656	[0.2-0.33] unit decrease	Affymetrix [19941912] (imputed)	N
1563	chr9	128287223	128287224	rs143761014	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	9q33.3	NR	rs143761014-?	NR	5E-6		4.585	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1563	chr9	128303309	128303310	rs116862617	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	9q33.3	NR	rs116862617-?	NR	4E-7		4446.719	NR unit decrease	Illumina [2379855]	N
1563	chr9	128303733	128303734	rs490234	26390057	Kato N	2015-09-21	Nat Genet	Trans-ancestry genome-wide association study identifies 12 genetic loci influencing blood pressure and implicates a role for DNA methylation.	Mean arterial pressure	31,516 East Asian ancestry individuals,  35,352 European ancestry individuals, 33,126 South Asian ancestry individuals	87,205 individuals, 48,268 East Asian ancestry individuals, 68,456 European ancestry individuals and 16,328 South Asian ancestry individuals	9q33.3	NR	rs490234-T	0.4010405676083548	9E-7		0.17062975	[0.1-0.24] mmHg decrease	Affymetrix, Illumina, Perlegen [~ 2100000] (imputed)	N
1564	chr9	128341022	128341023	rs577026	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	9q33.3	MAPKAP1	rs577026-G	0.559060613294917	8E-6		0.0024063	[NR] unit increase	Affymetrix [> 30000000] (imputed)	N
1564	chr9	128381062	128381063	rs484821	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	9q33.3	MAPKAP1	rs484821-G	NR	5E-6		0.0183254	[0.01-0.026] unit decrease	Illumina [13520550] (imputed)	N
1564	chr9	128412675	128412676	rs631287	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	9q33.3	Intergenic	rs631287-A	0.5584	3E-8	(MTAG)	0.0092	[0.0059-0.0125] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1564	chr9	128412675	128412676	rs631287	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	9q33.3		rs631287-A	0.558	3E-9		0.0084	[0.0057-0.0111] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1564	chr9	128412675	128412676	rs631287	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	9q33.3	Intergenic	rs631287-A	0.558	2E-10	(MTAG)	0.0084	[0.0059-0.0109] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1564	chr9	128432567	128432568	rs41305447	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	9q33.3	NR	rs41305447-?	NR	1E-6		4.83	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1564	chr9	128438004	128438005	rs1250736	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	9q33.3		rs1250736-G	NR	1E-9		0.0117	[0.008-0.0154] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
1565	chr9	128455999	128456000	rs113290458	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental extreme longevity (95 years and older)	1,339 middle-aged British cases, 40,934 middle-aged British controls	NA	9q33.3	NR	rs113290458-?	NR	3E-6		0.01353	[0.0079-0.0192] unit decrease	Affymetrix [9658292] (imputed)	N
1565	chr9	128462022	128462023	rs7852065	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	9q33.3		rs7852065-?	NR	1E-12				NR [~ 8900000] (imputed)	N
1565	chr9	128471923	128471924	rs13296519	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	9q33.3		rs13296519-G	0.606	8E-12		0.014	[0.01-0.018] unit decrease	Affymetrix [up to 90000000] (imputed)	N
1565	chr9	128498593	128498594	rs7023828	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	9q33.3	PBX3	rs7023828-T	0.4287	1E-17		0.2278	[0.18-0.28] mmHg decrease	Affymetrix [NR] (imputed)	N
1565	chr9	128498593	128498594	rs7023828	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	9q33.3	PBX3	rs7023828-T	0.4181	1E-22		0.2436	[0.19-0.29] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1565	chr9	128528977	128528978	rs7040561	31636452	Satizabal CL	2019-10-21	Nat Genet	Genetic architecture of subcortical brain structures in 38,851 individuals.	Caudate nucleus volume	37,741 European ancestry individuals	341 South East and East Asian ancestry individuals, 769 African American individuals	9q33.3	NR	rs7040561-A	0.8474	7E-10		6.177	NR z score decrease	Affymetrix, Illumina [NR] (imputed)	N
1565	chr9	128576556	128576558	rs1295381598	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9q33.3	NR	rs1295381598-G	0.02439	9E-10	(C11orf54)	0.2649	NR unit increase	Illumina [1671387] (imputed)	N
1566	chr9	128593469	128593470	rs13288002	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	9q33.3	PBX3	rs13288002-A	0.6415	2E-14		0.1587	[0.12-0.2] mmHg increase	Affymetrix [NR] (imputed)	N
1566	chr9	128601760	128601761	rs13293667	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	9q33.3		rs13293667-?	NR	1E-7				NR [~ 8900000] (imputed)	N
1566	chr9	128620008	128620009	rs10986983	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fish- and plant-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	9q33.3	MAPKAP1, PBX3	rs10986983-?	NR	2E-12		0.0177251	[0.013-0.023] unit increase	Affymetrix [25921788] (imputed)	N
1566	chr9	128629173	128629174	rs10819081	34340725	Campos AI	2021-08-03	Twin Res Hum Genet	Genetic Susceptibility to Pneumonia: A GWAS Meta-Analysis Between the UK Biobank and FinnGen.	Pneumonia	24,760 European ancestry cases, 525,615 European ancestry controls	NA	9q33.3		rs10819081-A	NR	5E-6		0.009	[0.0051-0.0129] unit decrease	NR [7831927]	N
1566	chr9	128651538	128651539	rs10987006	30531941	Doherty A	2018-12-10	Nat Commun	GWAS identifies 14 loci for device-measured physical activity and sleep duration.	Sleep duration	91,105 European ancestry individuals	NA	9q33.3	PBX3	rs10987006-C	0.355	7E-9		0.028	[0.018-0.038] SD units increase	NR [9926106] (imputed)	N
1566	chr9	128654391	128654392	rs1952670	34177598	Wolking S	2021-06-09	Front Pharmacol	Role of Common Genetic Variants for Drug-Resistance to Specific Anti-Seizure Medications.	Response to valproic acid in focal epilepsy	202 European ancestry cases, 528 European ancestry controls	NA			rs1952670-?	NR	9E-7				Illumina [NR] (imputed)	N
1566	chr9	128660206	128660207	rs10819083	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Squamous cell lung carcinoma	7,426 European ancestry cases, 55,627 European ancestry controls	NA	9q33.3	PBX3	rs10819083-T	0.640330689	9E-6		1.091151	[1.05-1.13]	Illumina [10439017] (imputed)	N
1566	chr9	128661599	128661600	rs10987008	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fish- and plant-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	9q33.3	MAPKAP1, PBX3	rs10987008-?	NR	1E-9	(male)	0.0229272	[0.016-0.03] unit increase	Affymetrix [25921788] (imputed)	N
1566	chr9	128661599	128661600	rs10987008	31235808	Shungin D	2019-06-24	Nat Commun	Genome-wide analysis of dental caries and periodontitis combining clinical and self-reported data.	Number of decayed, missing and filled tooth surfaces or use of dentures	14,976 European ancestry individuals with decayed, missing or filled tooth surface measurement, 11,816 Hispanic/Latino individuals with decayed, missing or filled tooth surface measurement, 77,714 European ancestry dentures cases, 383,317 European ancestry controls	NA	9q33.3	PBX3	rs10987008-A	0.64	7E-14		0.021	[0.016-0.026] unit increase	Affymetrix, Illumina [~ 8900000] (imputed)	N
1566	chr9	128661599	128661600	rs10987008	31235808	Shungin D	2019-06-24	Nat Commun	Genome-wide analysis of dental caries and periodontitis combining clinical and self-reported data.	Dentures	77,714 European ancestry cases, 383,317 European ancestry controls	NA	9q33.3	PBX3	rs10987008-A	0.64	3E-13		0.042	[0.031-0.053] unit increase	Affymetrix [at least 8900000] (imputed)	N
1566	chr9	128670178	128670179	rs1411350	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Raw vegetable consumption	335,576 European ancestry individuals	NA	9q33.3	MAPKAP1, PBX3	rs1411350-?	NR	4E-9		0.0152907	[0.01-0.02] unit increase	Affymetrix [25921788] (imputed)	N
1567	chr9	128746611	128746612	rs12238134	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (opioids)	22,982 European ancestry cases, 55,826 European ancestry controls, 3,566 East Asian ancestry cases, 175,160 East Asian ancestry controls	NA	9q33.3		rs12238134-G	NR	6E-9		0.0633	[0.042-0.085] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1567	chr9	128746611	128746612	rs12238134	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (opioids)	22,982 European ancestry cases, 55,826 European ancestry controls	NA	9q33.3	PBX3	rs12238134-A	0.305094	8E-10		0.07148008	[0.049-0.094] unit decrease	Affymetrix [7288503] (imputed)	N
1567	chr9	128752307	128752308	rs73582685	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin I concentration	1,606 African American individuals	NA	9q33.3		rs73582685-?	NR	3E-6		0.18	[0.1-0.26] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1567	chr9	128773540	128773541	rs147476757	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Ovarian cancer	647 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	9q33.3	Intergenic	rs147476757-?		8E-6		2.6	[1.71-3.96]	Illumina [7645193] (imputed)	N
1567	chr9	128831096	128831097	rs4838320	22566634	Benjamin DJ	2012-05-07	Proc Natl Acad Sci U S A	The genetic architecture of economic and political preferences.	Economic and political preferences (immigration/crime)	9,617 European ancestry individuals	NA	9q33.3	intergenic	rs4838320-T	NR	9E-6		0.197	[0.11-0.28] unit increase	Illumina [628922]	N
1568	chr9	128853642	128853643	rs10987145	27485664	Bonfiglio F	2016-08-03	Neurogastroenterol Motil	A meta-analysis of reflux genome-wide association studies in 6750 Northern Europeans from the general population.	Gastroesophageal reflux disease	2,247 European ancestry cases, 4,503 European ancestry controls	NA	9q33.3	Intergenic	rs10987145-T	0.32	7E-6				Illumina [2327020] (imputed)	N
1568	chr9	128857850	128857851	rs10987149	24009623	Jiang J	2013-08-30	Front Genet	Genome-wide association study for biomarker identification of Rapamycin and Everolimus using a lymphoblastoid cell line system.	Response to mTOR inhibitor (everolimus)	87 European ancestry individuals, 91 African American individuals, 94 Han Chinese ancestry individuals	NA	9q33.3	PBX3	rs10987149-?	NR	5E-6		0.28	[NR] unit increase	Affymetrix, Illumina [1348798]	N
1568	chr9	128902905	128902906	rs72756712	31164008	Mullins N	2019-06-05	Am J Psychiatry	GWAS of Suicide Attempt in Psychiatric Disorders and Association With Major Depression Polygenic Risk Scores.	Suicide attempts in schizophrenia	1,683 European ancestry attempters, 2,946 European ancestry nonattempters	NA	9q33.3	NR	rs72756712-G	0.050000000000000044	3E-6		1.6666665	[1.35-2.04]	NR [8814543] (imputed)	N
1568	chr9	128902905	128902906	rs72756712	31164008	Mullins N	2019-06-05	Am J Psychiatry	GWAS of Suicide Attempt in Psychiatric Disorders and Association With Major Depression Polygenic Risk Scores.	Suicide attempts in major depressive disorder or bipolar disorder or schizophrenia	1,622 European ancestry attempters with major depressive disorder, 8,786 European ancestry nonattempters with major depressive disorder, 3,264 European ancestry attempters with bipolar disorder, 5,500 European ancestry nonattempters with bipolar disorder, 1,683 European ancestry attempters with schizophrenia, 2,946 European ancestry nonattempters with schizophrenia	NA	9q33.3	NR	rs72756712-G	0.050000000000000044	3E-6		1.2820514	[1.16-1.43]	NR [at least 8482392] (imputed)	N
1568	chr9	128902905	128902906	rs72756712	31164008	Mullins N	2019-06-05	Am J Psychiatry	GWAS of Suicide Attempt in Psychiatric Disorders and Association With Major Depression Polygenic Risk Scores.	Suicide attempts in major depressive disorder or bipolar disorder or schizophrenia	1,622 European ancestry attempters with major depressive disorder, 8,786 European ancestry nonattempters with major depressive disorder, 3,264 European ancestry attempters with bipolar disorder, 5,500 European ancestry nonattempters with bipolar disorder, 1,683 European ancestry attempters with schizophrenia, 2,946 European ancestry nonattempters with schizophrenia	NA	9q33.3	NR	rs72756712-G	0.050000000000000044	3E-6		1.2820514	[1.16-1.43]	NR [at least 8482392] (imputed)	N
1568	chr9	128929022	128929023	rs888219	19721433	McClay JL	2009-09-01	Mol Psychiatry	Genome-wide pharmacogenomic analysis of response to treatment with antipsychotics.	Response to antipsychotic treatment	494 European ancestry cases, 244 African American and other ancestry cases	NA	9q33.3	intergenic	rs888219-?	NR	2E-7	(risperidone)	11.0	[NR] % variance	Affymetrix, Perlegen [492900]	N
1568	chr9	128968986	128968987	rs10987199	30571770	Arnau-Soler A	2018-12-20	PLoS One	Genome-wide interaction study of a proxy for stress-sensitivity and its prediction of major depressive disorder.	Stress sensitivity (neuroticism score x major depressive disorder status interaction)	9,844 European ancestry cases, 20,403 European ancestry controls	NA	9q33.3	LOC101929116	rs10987199-A	NR	9E-6		4.442	NR z score decrease	Affymetrix [at least 557813] (imputed)	N
1569	chr9	129025261	129025262	rs79688804	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	9q33.3	NR	rs79688804-A	NR	1E-6	(male)	0.2924	[0.17-0.41] unit increase	Illumina [11133794] (imputed)	N
1570	chr9	129151883	129151884	rs73668018	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	9q33.3	NR	rs73668018-T	0.120163	2E-9		0.0285188	[0.019-0.038] unit decrease	NR [19129689] (imputed)	N
1570	chr9	129156501	129156502	rs10987265	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Intraocular pressure	101,939 European ancestry cases	NA	9q33.3	NR	rs10987265-T		7E-9		0.13	[0.091-0.169] unit increase	NR [NR]	N
1570	chr9	129163461	129163462	rs10987266	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	9q33.3	MVB12B	rs10987266-T	0.061	2E-9		0.024362508	[0.016-0.032] unit increase	Illumina [9339358] (imputed)	N
1570	chr9	129194772	129194773	rs758970	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	9q33.3	FAM125B	rs758970-A	0.309	6E-7	(Total T4 )	0.05	[NR] ug/dL increase	Illumina [899892]	N
1570	chr9	129206831	129206832	rs10122788	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	9q33.3	SCAI, PPP6C, RABEPK, HSPA5, GAPVD1, PBX3, MVB12B	rs10122788-?		1E-13				Affymetrix, Illumina [NR] (imputed)	N
1570	chr9	129206831	129206832	rs10122788	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	9q33.3	MVB12B, NRON	rs10122788-G	0.43600000000000005	2E-6		1.0540073		NR [9372253] (imputed)	N
1570	chr9	129206831	129206832	rs10122788	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	9q33.3	MVB12B	rs10122788-A	0.5603	4E-8		5.491	[NR] z score increase	Affymetrix, Illumina [~ 11000000] (imputed)	N
1570	chr9	129236354	129236355	rs4836544	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	9q33.3	MVB12B	rs4836544-T	0.8846	4E-9		0.0175	[0.012-0.023] unit increase	Affymetrix [18391927] (imputed)	N
1571	chr9	129246486	129246487	rs2286885	24518671	Nag A	2014-02-11	Hum Mol Genet	A genome-wide association study of intra-ocular pressure suggests a novel association in the gene FAM125B in the TwinsUK cohort.	Intraocular pressure	2,774 European ancestry individuals	22,789 European ancestry and Erasmus Rucphen individuals	9q33.3	FAM125B	rs2286885-A	0.57	6E-6		0.12	[0.07-0.18] mmHg increase	Illumina [~ 1870000]	N
1571	chr9	129250118	129250119	rs57032711	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	9q33.3	MVB12B, NRON, LOC101929116	rs57032711-?		2E-7	(heterogeneous)	0.219	[0.14-0.3] unit decrease	Illumina [1492601] (imputed)	N
1571	chr9	129250118	129250119	rs57032711	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	9q33.3	MVB12B, NRON, LOC101929116	rs57032711-?		1E-8	(dominant)	0.234	[-0.05412-0.52212] unit decrease	Illumina [1492601] (imputed)	N
1571	chr9	129250118	129250119	rs57032711	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	9q33.3	MVB12B, NRON, LOC101929116	rs57032711-?		1E-8	(additive)	0.209	[0.14-0.28] unit decrease	Illumina [1492601] (imputed)	N
1571	chr9	129277040	129277041	rs62578082	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Chin dimples	58,032 European ancestry cases, 13,457 European ancestry controls	NA	9q33.3	MVB12B, LMX1B	rs62578082-?	NR	1E-8		1.14	[1.089-1.194]	Illumina [13537761] (imputed)	N
1571	chr9	129286867	129286868	rs953226	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	9q33.3	NR	rs953226-A	NR	6E-10		0.0277	[0.019-0.037] unit decrease	Affymetrix [9000000] (imputed)	N
1571	chr9	129287563	129287564	rs35714990	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	9q33.3	NR	rs35714990-T	NR	4E-29		0.033	[0.027-0.039] unit increase	Affymetrix [9000000] (imputed)	N
1571	chr9	129294137	129294138	rs10819177	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	83,980 East Asian ancestry individuals	NA	9q33.3		rs10819177-A	0.60429	2E-11		0.0326521	[0.023-0.042] unit increase	Illumina [13468899] (imputed)	N
1571	chr9	129294470	129294471	rs10739679	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	9q33.3		rs10739679-G	NR	3E-45		0.0325	[0.028-0.037] unit increase	Affymetrix, Illumina [20528270] (imputed)	N
1571	chr9	129294470	129294471	rs10739679	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	9q33.3	NR	rs10739679-G	NR	8E-12		0.0178	[0.013-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
1571	chr9	129294842	129294843	rs62578091	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	9q33.3	NR	rs62578091-T	NR	4E-9		0.0533	[0.035-0.071] unit decrease	Affymetrix [9000000] (imputed)	N
1571	chr9	129294953	129294954	rs13301969	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Calcium levels	71,701 Japanese ancestry individuals	NA	9q33.3	MVB12B, LMX1B	rs13301969-?	NR	1E-9		0.03273	[0.022-0.043] unit increase novel	Illumina [6108953] (imputed)	N
1571	chr9	129294975	129294976	rs10819178	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	9q33.3	NR	rs10819178-G	0.6378	2E-39		0.003035	[0.0026-0.0035] unit increase	Affymetrix [NR] (imputed)	N
1571	chr9	129319274	129319275	rs78287666	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	9q33.3	AL161908.1	rs78287666-T	NR	2E-8		0.0441003	[0.029-0.059] unit decrease	Affymetrix [321016] (imputed)	N
1571	chr9	129325438	129325439	rs10987356	30796134	Soderholm M	2019-02-22	Neurology	Genome-wide association meta-analysis of functional outcome after ischemic stroke.	3-month functional outcome in ischaemic stroke (modified Rankin score)	6,165 European and unknown ancestry individuals	NA	9q33.3	Mir_1302, LMX1B	rs10987356-T	0.078	5E-6		1.34	[1.21-1.47]	Affymetrix, Illumina [~ 8500000] (imputed)	N
1571	chr9	129330128	129330129	rs12003314	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9q33.3		rs12003314-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1571	chr9	129341620	129341621	rs7872097	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	9,179 European ancestry cases, 134,471 European ancestry controls, 1,983 East Asian ancestry cases, 13,719 East Asian ancestry controls, 127 Sub-Saharan African ancestry cases, 100 Sub-Saharan African ancestry controls	NA	9q33.3	MVB12B-LMX1B	rs7872097-T	NR	2E-13		1.12975	[1.1-1.16]	Illumina [NR] (imputed)	N
1571	chr9	129367397	129367398	rs6478746	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Intraocular pressure	133,492 European ancestry individuals	NA	9q33.3	LMX1B	rs6478746-?	NR	5E-27		0.1549	[0.13-0.18] unit decrease	Affymetrix, Illumina [up to 40000000] (imputed)	N
1571	chr9	129367397	129367398	rs6478746	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Glaucoma	11,018 European ancestry cases, 126,068 European ancestry controls	NA	9q33.3	LMX1B	rs6478746-?	NR	6E-17		1.1523461	[1.11-1.19]	Affymetrix [up to 40000000] (imputed)	N
1571	chr9	129367397	129367398	rs6478746	29449654	Gharahkhani P	2018-02-15	Sci Rep	Analysis combining correlated glaucoma traits identifies five new risk loci for open-angle glaucoma.	Open-angle glaucoma and optic cup area	3,071 European ancestry open-angle glaucoma cases, 6,750 European ancestry controls, 22,489 European ancestry individuals with optic disc data, 7,339 Asian ancestry individuals with optic disc data	NA	9q33.3	LMX1B, LOC105376277	rs6478746-G	NR	5E-8	(EA)			Illumina [NR] (imputed)	N
1571	chr9	129367397	129367398	rs6478746	29449654	Gharahkhani P	2018-02-15	Sci Rep	Analysis combining correlated glaucoma traits identifies five new risk loci for open-angle glaucoma.	Glaucoma (primary open-angle)	3,071 European ancestry cases, 6,750 European ancestry controls	3,853 cases, 33,480 controls	9q33.3	LOC105376277, LMX1B	rs6478746-G	NR	9E-7		1.14	[1.08-1.20]	Illumina [NR] (imputed)	N
1572	chr9	129369970	129369971	rs10819187	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Intraocular pressure	133,492 European ancestry individuals	NA	9q33.3	LMX1B	rs10819187-?	NR	2E-15		0.1588	[0.12-0.2] unit decrease	Affymetrix, Illumina [up to 40000000] (imputed)	N
1572	chr9	129370575	129370576	rs2275241	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	9q33.3	LMX1B	rs2275241-G	0.628088	8E-13		0.0103897	[0.0075-0.0132] unit decrease	Affymetrix [12370749]	N
1572	chr9	129370575	129370576	rs2275241	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Intraocular pressure	133,492 European ancestry individuals	NA	9q33.3	LMX1B	rs2275241-G	0.63	2E-32				Affymetrix, Illumina [8002429] (imputed)	N
1572	chr9	129370575	129370576	rs2275241	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Glaucoma (multi-trait analysis)	133,492 European ancestry individuals with intraocular pressure measurements, 90,939 European ancestry individuals with vertical cup-disc ratio measurements, 7,947 British ancestry glaucoma cases, 119,318 British ancestry controls	6,924 European ancestry glaucoma cases, 40,230 European ancestry controls	9q33.3	LMX1B	rs2275241-G	0.63	3E-40		1.16	NR	Affymetrix, Illumina [8002429] (imputed)	N
1572	chr9	129370575	129370576	rs2275241	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Glaucoma	7,947 British ancestry cases, 119,318 British ancestry controls	NA	9q33.3	LMX1B	rs2275241-G	0.63	2E-13		1.14	NR	Affymetrix [at least 8002429] (imputed)	N
1572	chr9	129373109	129373110	rs12377624	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Intraocular pressure	101,939 European ancestry cases	NA	9q33.3	NR	rs12377624-G		6E-30		0.17	[0.15-0.19] unit increase	NR [NR]	N
1572	chr9	129373109	129373110	rs12377624	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Intraocular pressure	133,492 European ancestry individuals	NA	9q33.3	LMX1B	rs12377624-?	NR	1E-31		0.1544	[0.13-0.18] unit decrease	Affymetrix, Illumina [up to 40000000] (imputed)	N
1572	chr9	129373109	129373110	rs12377624	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Glaucoma	11,018 European ancestry cases, 126,068 European ancestry controls	NA	9q33.3	LMX1B	rs12377624-?	NR	4E-14		1.1302061	[1.09-1.17]	Affymetrix [up to 40000000] (imputed)	N
1572	chr9	129373109	129373110	rs12377624	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	9q33.3	LMX1B	rs12377624-G	0.627	1E-31		0.154	[0.13-0.18] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1572	chr9	129375337	129375338	rs62578126	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antiglaucoma preparations and miotics)	5,215 European ancestry cases, 95,653 European ancestry controls, 5,911 East Asian ancestry cases, 172,815 East Asian ancestry controls	NA	9q33.3		rs62578126-T	NR	2E-12		0.1147	[0.083-0.147] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1572	chr9	129375337	129375338	rs62578126	34450027	Boer CG	2021-08-24	Cell	Deciphering osteoarthritis genetics across 826,690 individuals from 9 populations.	Osteoarthritis (with total hip replacement)	23,021 European ancestry cases, 296,016 European ancestry controls	NA	9q33.3		rs62578126-T	0.369	1E-12		0.9218249	[0.901279746-0.942838367]	Affymetrix, Illumina [NR] (imputed)	N
1572	chr9	129375337	129375338	rs62578126	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	9q33.3	LMX1B	rs62578126-T	0.3721	2E-11		0.0129	[0.0092-0.0166] unit decrease	Affymetrix [18391927] (imputed)	N
1572	chr9	129375337	129375338	rs62578126	26926045	Adhikari K	2016-03-01	Nat Commun	A genome-wide association scan in admixed Latin Americans identifies loci influencing facial and scalp hair features.	Eyebrow thickness	2,922 Latin American individuals	NA	9q33.3	LMX1B, MVB12B, NRON, ZBTB34, ZBTB43	rs62578126-?	NR	3E-6				Illumina [9143600] (imputed)	N
1572	chr9	129377234	129377235	rs2235056	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	9q33.3	LMX1B	rs2235056-T	0.08	3E-8		0.017	[0.011-0.023] unit decrease	Illumina [6108953] (imputed)	N
1572	chr9	129377854	129377855	rs1336980	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	16,677 European ancestry cases, 199,580 European ancestry controls	7,286 European ancestry cases, 107,362 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	9q33.3	LMX1B	rs1336980-C	NR	9E-19		0.884087	[0.86-0.91]	Affymetrix, Illumina [14822926] (imputed)	N
1572	chr9	129377854	129377855	rs1336980	33045005	Vogelezang S	2020-10-12	PLoS Genet	Novel loci for childhood body mass index and shared heritability with adult cardiometabolic traits.	Childhood body mass index	39,620 European ancestry individuals	NA	9q33.3	LMX1B	rs1336980-C	0.36	7E-7		0.04	[0.024-0.056] unit increase	Affymetrix, Illumina [8227808] (imputed)	N
1572	chr9	129378025	129378026	rs945686	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Glaucoma	11,018 European ancestry cases, 126,068 European ancestry controls	NA	9q33.3	LMX1B	rs945686-C	NR	3E-17		1.1627907	[1.11-1.2]	Affymetrix [up to 40000000] (imputed)	N
1572	chr9	129379229	129379230	rs10987373	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glaucoma	10,411 European ancestry cases, 474,568 European ancestry controls, 8,448 East Asian ancestry cases, 168,903 East Asian ancestry controls	NA	9q33.3		rs10987373-C	NR	3E-25		0.1311	[0.11-0.16] unit decrease	Affymetrix, Illumina [25844939] (imputed)	N
1572	chr9	129379229	129379230	rs10987373	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	9q33.3	NR	rs10987373-C	0.376898	5E-9		0.0419415	[0.028-0.056] unit decrease	Affymetrix [17914406] (imputed)	N
1572	chr9	129382559	129382560	rs1536907	29891935	Choquet H	2018-06-11	Nat Commun	A multiethnic genome-wide association study of primary open-angle glaucoma identifies novel risk loci.	Glaucoma (primary open-angle)	10,523 European ancestry cases, 203,579 European ancestry controls, 411 Hispanic cases, 4,778 Hispanic controls, 463 East Asian ancestry cases, 4,907 East Asian ancestry controls, 298 African American cases, 1,549 African American controls, 204 South Asian ancestry cases, 4,916 South Asian ancestry controls, 272 African British cases, 4,831 African British controls, 144 mixed ancestry cases, 3,427 mixed ancestry controls	NA	9q33.3	LMX1B	rs1536907-G	NR	1E-17		1.1494253	[1.11-1.19]	Affymetrix [at least 665500] (imputed)	N
1572	chr9	129383899	129383900	rs10760442	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	9q33.3		rs10760442-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1572	chr9	129383899	129383900	rs10760442	30374069	Styrkarsdottir U	2018-10-29	Nat Genet	Meta-analysis of Icelandic and UK data sets identifies missense variants in SMO, IL11, COL11A1 and 13 more new loci associated with osteoarthritis.	Osteoarthritis (hip)	17,151 European ancestry cases, 596,639 European ancestry controls	NA	9q33.3	LMX1B	rs10760442-G	NR	8E-12	(additive)	1.09	[1.06-1.11]	Affymetrix, Illumina [11554240] (imputed)	N
1572	chr9	129383899	129383900	rs10760442	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	9q33.3	LMX1B	rs10760442-G	0.63	7E-31		0.1606	[0.13-0.19] unit increase	Affymetrix [~ 11900000] (imputed)	N
1572	chr9	129386859	129386860	rs62578127	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Osteoarthritis (hip)	15,704 European ancestry cases, 378,169 European ancestry controls	NA	9q33.3	NR	rs62578127-C	0.63	3E-12		1.09	[1.06-1.11]	Affymetrix, Illumina [up to 17000000] (imputed)	N
1572	chr9	129390799	129390800	rs3829849	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls	NA	9q33.3	LMX1B	rs3829849-T	NR	6E-9		0.840381	[0.78-0.9]	Illumina [11610548] (imputed)	N
1572	chr9	129390799	129390800	rs3829849	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	23,963 European ancestry cases, 306,942 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	43,254 European ancestry cases, 1,471,118 European ancestry controls	9q33.3	LMX1B	rs3829849-T	NR	1E-25		0.0778	unit decrease	Illumina [15409056] (imputed)	N
1572	chr9	129390799	129390800	rs3829849	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	9q33.3	LMX1B	rs3829849-C	0.63144	4E-13		0.013909	[0.01-0.018] unit decrease	NR [13737936] (imputed)	N
1572	chr9	129390799	129390800	rs3829849	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	9q33.3		rs3829849-?	NR	2E-11		0.0138863	[0.0096-0.0181] unit decrease	Affymetrix [20259828] (imputed)	N
1572	chr9	129390799	129390800	rs3829849	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	9q33.3	LMX1B	rs3829849-C	0.6307	7E-32		0.1634	[0.14-0.19] unit increase	Affymetrix [~ 11900000] (imputed)	N
1572	chr9	129390799	129390800	rs3829849	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Monobrow	69,284 European ancestry individuals	NA	9q33.3	LMX1B	rs3829849-?	NR	1E-15		0.03	[0.023-0.038] unit increase	Illumina [12039491] (imputed)	N
1572	chr9	129390799	129390800	rs3829849	26604143	Felix JF	2015-11-24	Hum Mol Genet	Genome-wide association analysis identifies three new susceptibility loci for childhood body mass index.	Childhood body mass index	34,744 European ancestry children	11,313 European ancestry children	9q33.3	LMX1B	rs3829849-T	0.36	9E-9		0.041	[0.027-0.055] unit increase	Affymetrix, Illumina [2499691] (imputed)	N
1572	chr9	129391537	129391538	rs34186918	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (antiglaucoma preparations and miotics)	5,215 European ancestry cases, 95,653 European ancestry controls	NA	9q33.3	LMX1B	rs34186918-T	0.238886	3E-12		0.16354716	[0.12-0.21] unit increase	Affymetrix [7288503] (imputed)	N
1572	chr9	129392364	129392365	rs10987375	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glaucoma	8,448 East Asian ancestry cases, 168,903 East Asian ancestry controls	NA	9q33.3		rs10987375-T	0.148388999	1E-8		0.13292958	[0.087-0.179] unit decrease	Illumina [13429686] (imputed)	N
1572	chr9	129396433	129396434	rs10760444	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	9q33.3		rs10760444-A	NR	8E-14		0.96	[0.95-0.97]	Affymetrix, Illumina [NR] (imputed)	N
1572	chr9	129396433	129396434	rs10760444	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	9q33.3	LMX1B	rs10760444-G	0.43	9E-9	(EA)	1.03	[1.02-1.05] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
1572	chr9	129397013	129397014	rs10448285	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	8,758 European ancestry cases, 108,815 European ancestry controls, 1,996 East Asian ancestry cases, 16,559  East Asian ancestry controls, 171 Sub-Saharan African ancestry cases, 94 Sub-Saharan African ancestry controls	NA	9q33.3	LMX1B	rs10448285-T	NR	2E-16		0.869184	[0.84-0.9]	Illumina [NR] (imputed)	N
1572	chr9	129397013	129397014	rs10448285	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 57)	3,566 European ancestry individuals	4,680 European ancestry individuals	9q33.3		rs10448285-T	0.341272105	1E-10				Illumina [7417619] (imputed)	N
1572	chr9	129401549	129401550	rs11792928	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (high intraocular pressure)	3,376 European ancestry cases, 15,151 European ancestry controls, 1,516 East Asian ancestry cases, 32,649 East Asian ancestry controls, 252 Sub-Saharan African ancestry cases, 197 Sub-Saharan African ancestry controls	NA	9q33.3	LMX1B	rs11792928-T	NR	8E-9		0.843159	[0.79-0.9]	Illumina [NR] (imputed)	N
1572	chr9	129402566	129402567	rs12342373	24564958	St Pourcain B	2014-02-24	Mol Autism	Variability in the common genetic architecture of social-communication spectrum phenotypes during childhood and adolescence.	Social communication problems	Up to 5,628 European ancestry individuals	NA	9q33.3	LMX1B	rs12342373-A	0.09	3E-6	(Age 8)	0.19	[0.11-0.27] unit increase	Illumina [2293137] (imputed)	N
1572	chr9	129405862	129405863	rs71497626	33578652	Adjei AA	2021-02-10	Cancers (Basel)	Genetic Variations and Health-Related Quality of Life (HRQOL): A Genome-Wide Study Approach.	Mental health related quality of life	1,386 European ancestry individuals, 56 individuals	NA	9q33.3	LMX1B	rs71497626-A	0.011	3E-7		17.16	[10.61-23.71] unit decrease	Illumina [7254516] (imputed)	N
1572	chr9	129408289	129408290	rs7027304	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	9q33.3		rs7027304-T	NR	6E-12		0.0134	[0.0097-0.0171] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1572	chr9	129408289	129408290	rs7027304	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	9q33.3	LMX1B	rs7027304-T	0.6483	2E-6		0.0342	[0.02-0.048] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1572	chr9	129408512	129408513	rs10819190	27629089	Sailer A	2016-09-14	Neurology	A genome-wide association study in multiple system atrophy.	Multiple system atrophy	918 European ancestry cases, 3,864 European ancestry controls	NA	9q33.3	LMX1B	rs10819190-G	0.63	5E-6		1.32		Illumina [4903804] (imputed)	N
1572	chr9	129409197	129409198	rs6478750	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Intraocular pressure	101,939 European ancestry cases	NA	9q33.3	NR	rs6478750-T		2E-16		0.12	[0.1-0.14] unit increase	NR [NR]	N
1572	chr9	129409197	129409198	rs6478750	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	9q33.3	LMX1B	rs6478750-T	0.597	4E-19		0.118	[0.093-0.143] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1572	chr9	129414928	129414929	rs3814120	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	9q33.3	NA	rs3814120-A	0.0851	1E-12		0.0213	[0.015-0.027] unit increase	NR [~ 27400000] (imputed)	N
1572	chr9	129415774	129415775	rs7030609	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		9q33.3	LMX1B	rs7030609-A	0.910471	4E-10		0.0151409	[0.01-0.02] unit decrease	Affymetrix [12370749]	N
1572	chr9	129418447	129418448	rs56410689	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	9q33.3		rs56410689-?	NR	1E-19				NR [~ 8900000] (imputed)	N
1572	chr9	129420685	129420686	rs59649211	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	9q33.3	NR	rs59649211-?	NR	3E-10				Affymetrix [~ 8270000] (imputed)	N
1572	chr9	129423767	129423768	rs55686925	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Intraocular pressure	101,939 European ancestry cases	NA	9q33.3	NR	rs55686925-A		2E-11		0.17	[0.11-0.23] unit increase	NR [NR]	N
1572	chr9	129428676	129428677	rs4322101	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	9q33.3	NR	rs4322101-?	NR	4E-11				Affymetrix [~ 8270000] (imputed)	N
1572	chr9	129433928	129433929	rs4837104	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	35,422 individuals (>=25 years old)	NA	9q33.3		rs4837104-A	NR	3E-9		0.0227	[0.016-0.03] mm increase	Affymetrix, Illumina [8936601] (imputed)	N
1572	chr9	129433928	129433929	rs4837104	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	29,580 European ancestry individuals, 14,462 Asian ancestry individuals	88,218 European ancestry individuals	9q33.3		rs4837104-A	0.04	3E-24		0.022	mm increase	Affymetrix, Illumina [8936601] (imputed)	N
1572	chr9	129433928	129433929	rs4837104	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	14,462 Asian ancestry individuals	NA	9q33.3		rs4837104-A	0.27	4E-7		0.021	mm increase	Affymetrix, Illumina [7861976] (imputed)	N
1572	chr9	129435020	129435021	rs10120322	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	9q33.3	NA	rs10120322-T		1E-8		0.0172473	[0.011-0.023] unit increase	Illumina [13288253] (imputed)	N
1572	chr9	129453008	129453009	rs144076261	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Trunk fat mass	3,399 whole genome sequenced individuals, 12,838 European ancestry individuals	10,667 European ancestry individuals	9q33.3	LMX1B	rs144076261-T	0.0101	6E-6		0.3224	[0.18-0.46] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1572	chr9	129453008	129453009	rs144076261	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body fat mass	3,399 whole genome sequenced individuals, 11,802 European ancestry individuals	10,670 European ancestry individuals	9q33.3	LMX1B	rs144076261-T	0.01	4E-7		0.3406	[0.21-0.47] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1572	chr9	129459477	129459478	rs10987414	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 133)	19,670 European ancestry individuals	NA	9q33.3		rs10987414-?	NR	1E-8				NR [9705931] (imputed)	N
1572	chr9	129460395	129460396	rs10987416	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	9q33.3		rs10987416-T	0.33	3E-24		10.17	z score increase	Affymetrix [9061022] (imputed)	N
1572	chr9	129460913	129460914	rs10733682	31622379	Best LG	2019-10-17	PLoS One	Genetic analysis of hsCRP in American Indians: The Strong Heart Family Study.	C-reactive protein levels	1,892 American Indian ancestry individuals	NA	9q33.3	LMX1B	rs10733682-A	0.243	2E-6		4.81	unit increase (z-score)	Illumina [120972]	N
1572	chr9	129460913	129460914	rs10733682	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	9q33.3		rs10733682-?	NR	2E-12				NR [~ 8900000] (imputed)	N
1572	chr9	129460913	129460914	rs10733682	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	9q33.3	NR	rs10733682-A	NR	8E-13		0.019	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
1572	chr9	129460913	129460914	rs10733682	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	9q33.3	ZBTB43	rs10733682-A	0.467	5E-6				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1572	chr9	129460913	129460914	rs10733682	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	9q33.3	ZBTB43	rs10733682-A	0.467	9E-6		0.0156	[0.0087-0.0225] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1572	chr9	129460913	129460914	rs10733682	26961502	Wood AR	2016-03-10	Diabetologia	Variants in the FTO and CDKAL1 loci have recessive effects on risk of obesity and type 2 diabetes, respectively.	Body mass index	29,925 British ancestry cases, 89,763 British ancestry controls	NA	9q33.3	LMX1B	rs10733682-A	NR	9E-6	(additive model)	0.019	[0.011-0.027] unit increase	NR [9288881] (imputed)	N
1572	chr9	129460913	129460914	rs10733682	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	9q33.3	NR	rs10733682-A	0.476859395790286	3E-11		0.018371465	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1572	chr9	129460913	129460914	rs10733682	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	9q33.3	LMX1B	rs10733682-A	0.478	2E-8	(EA)	0.017	[0.011-0.023] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1572	chr9	129460913	129460914	rs10733682	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	9q33.3	LMX1B	rs10733682-A	0.477	2E-8	(EA, women)	0.023	[0.015-0.031] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1572	chr9	129460913	129460914	rs10733682	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	9q33.3	LMX1B	rs10733682-A	0.475	2E-10		0.019	[0.013-0.025] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1572	chr9	129464855	129464856	rs3861879	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	9q33.3		rs3861879-G	NR	6E-11		0.0125	[0.0088-0.0162] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1572	chr9	129465232	129465233	rs867560	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	9q33.3	NA	rs867560-C	0.568	1E-15		0.0136	[0.01-0.017] unit decrease	NR [~ 27400000] (imputed)	N
1572	chr9	129465232	129465233	rs867560	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	9q33.3	NA	rs867560-C	0.568	1E-15		0.0136	[0.01-0.017] unit decrease	NR [~ 27400000] (imputed)	N
1572	chr9	129465324	129465325	rs867559	20935630	Speliotes EK	2010-10-10	Nat Genet	Association analyses of 249,796 individuals reveal 18 new loci associated with body mass index.	Body mass index	Up to 123,865 European ancestry individuals	Up to 125,931 European ancestry individuals	9q33.3	LMX1B	rs867559-G	0.22	1E-7				Affymetrix, Illumina, Perlegen [~ 2800000] (imputed)	N
1572	chr9	129469445	129469446	rs62578156	31757997	Low SK	2019-11-22	Sci Rep	Identification of two novel breast cancer loci through large-scale genome-wide association study in the Japanese population.	Breast cancer	6,669 Japanese ancestry cases, 21,930 Japanese ancestry controls	981 Japanese ancestry cases, 1,394 Japanese ancestry controls	9q33.3	LMX1B	rs62578156-G	0.1108	5E-6		1.1455	[1.08033-1.2146]	Illumina [4946503] (imputed)	N
1572	chr9	129471896	129471897	rs7870976	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	9q33.3	NR	rs7870976-?	NR	1E-9				Affymetrix [NR]	N
1573	chr9	129517440	129517441	rs35196838	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	9q33.3		rs35196838-?	NR	7E-10				NR [~ 8900000] (imputed)	N
1573	chr9	129620549	129620550	rs74865532	34162658	Quinn MC	2021-06-23	Cancer Epidemiol Biomarkers Prev	Identification of a locus near ULK1 associated with progression-free survival in ovarian cancer.	Progression free survival in serous epithelial ovarian cancer treated with carboplatin and paclitaxel	1,751 European ancestry individuals	NA	9q33.3	NR	rs74865532-C		3E-6		2.0551	[1.2-2.91] unit decrease	Illumina [12759548] (imputed)	N
1573	chr9	129627959	129627960	rs10987507	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	9q33.3		rs10987507-?	NR	3E-8		0.0185	unit decrease	NR [NR]	N
1574	chr9	129655444	129655445	rs610116	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	9q33.3	ZBTB34, RALGPS1, ANGPTL2	rs610116-?		9E-9				NR [7428630] (imputed)	N
1574	chr9	129662279	129662280	rs10739686	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	9q33.3	NR	rs10739686-C	0.3067	9E-12				NR [9056863] (imputed)	N
1574	chr9	129670691	129670692	rs4837118	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	9q33.3	Intergenic	rs4837118-A	0.3113	4E-9	(MTAG)	0.0114	[0.0077-0.0151] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1574	chr9	129670691	129670692	rs4837118	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	9q33.3	Intergenic	rs4837118-A	0.3113	6E-9		0.0123	[0.0082-0.0164] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1574	chr9	129673225	129673226	rs592927	33907183	Guo S	2021-04-27	Transl Psychiatry	Genome wide association study identifies four loci for early onset schizophrenia.	Early-onset schizophrenia	1,256 Han Chinese ancestry cases, 2,661 Han Chinese ancestry controls	903 Han Chinese ancestry cases, 3,900 Han Chinese ancestry controls	9q33.3	RALGPS1	rs592927-A	0.19	4E-11		1.3399	[NR]	Illumina [4867007] (imputed)	N
1574	chr9	129688558	129688559	rs13288470	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Problematic alcohol use (MTAG)	972,915 European ancestry individuals	NA	9q33.3	NR	rs13288470-T	0.1236	3E-8		0.020470936	[0.013-0.028] unit decrease	Affymetrix [10613246] (imputed)	N
1574	chr9	129688558	129688559	rs13288470	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol consumption (drinks per week) (MTAG)	972,915 European ancestry individuals	NA	9q33.3	NR	rs13288470-T	0.119	3E-9		0.016645709	[0.011-0.022] unit decrease	Affymetrix [NR] (imputed)	N
1574	chr9	129702841	129702842	rs11790018	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	9q33.3		rs11790018-C	0.63	5E-11				NR [NR] (imputed)	N
1574	chr9	129702841	129702842	rs11790018	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	9q33.3		rs11790018-C	0.63	1E-12		0.011	% increase	NR [NR] (imputed)	N
1574	chr9	129705506	129705507	rs13284900	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	9q33.3	NR	rs13284900-?	NR	1E-9		1.07283	[1.05-1.1]	Affymetrix, Illumina [12447948] (imputed)	N
1574	chr9	129725819	129725820	rs192256335	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	9q33.3	RALGPS1	rs192256335-G	1.0	3E-6	(AA)	0.604	unit increase	Illumina [NR] (imputed)	N
1574	chr9	129738592	129738592	rs112367251	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	9q33.3	RALGPS1	rs112367251-T	0.643	1E-17		0.0179	[0.014-0.022] unit decrease	Affymetrix [18391927] (imputed)	N
1574	chr9	129740282	129740283	rs11790388	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	9q33.3	RALGPS1	rs11790388-G	NR	1E-7		1.0706638	[1.05-1.1]	Illumina [6627481] (imputed)	N
1574	chr9	129740282	129740283	rs11790388	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	9q33.3	intergenic	rs11790388-G	NR	8E-8		1.0706638	[1.05-1.1]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1574	chr9	129740282	129740283	rs11790388	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	9q33.3	NR	rs11790388-G	NR	2E-6		1.0752687	[NR]	Illumina [7158791] (imputed)	N
1574	chr9	129745119	129745119	rs3052977	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	9q33.3		rs3052977-CTCT	NR	2E-13		0.0136	[0.01-0.017] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1574	chr9	129757850	129757851	rs62580791	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Intraocular pressure	133,492 European ancestry individuals	NA	9q33.3	RALGPS1	rs62580791-A	0.54	2E-14				Affymetrix, Illumina [8002429] (imputed)	N
1575	chr9	129799005	129799006	rs187210295	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Number of common colds	43,826 European ancestry cases, 15,720 European ancestry controls	NA	9q33.3	NR	rs187210295-?	NR	6E-6		0.1433	[0.081-0.205] unit increase	Illumina [at least 560000] (imputed)	N
1575	chr9	129803310	129803310	rs71493874	30894546	Ivarsdottir EV	2019-03-20	Nat Commun	Sequence variation at ANAPC1 accounts for 24% of the variability in corneal endothelial cell density.	Corneal endothelial cell size variation coefficient	6,125 Icelandic ancestry individuals	NA	9q33.3	NR	rs71493874-GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTA		8E-7		0.127	[NR] unit decrease	Illumina [NR]	N
1575	chr9	129833028	129833029	rs2789514	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9q33.3		rs2789514-?	NR	4E-21				NR [~ 8900000] (imputed)	N
1575	chr9	129854157	129854158	rs752232897	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Height	458,235 European ancestry individuals	NA	9q33.3		rs752232897-?	NR	4E-10		0.451229	[0.3-0.6] unit decrease	NR [9800000] (imputed)	N
1575	chr9	129854198	129854199	rs2297866	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	9q33.3	NR	rs2297866-A	0.4574	5E-12				NR [9056863] (imputed)	N
1575	chr9	129855936	129855937	rs138423884	31624269	Terao C	2019-10-17	Nat Commun	GWAS of mosaic loss of chromosome Y highlights genetic effects on blood cell differentiation.	Mosaic loss of chromosome Y (Y chromosome dosage)	95,380 Japanese men	NA	9q33.3	ANGPTL2, RALGPS1	rs138423884-G	0.038	1E-12		0.079	NR unit increase	Illumina [9591901] (imputed)	N
1575	chr9	129863167	129863168	rs11795066	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Intraocular pressure	133,492 European ancestry individuals	NA	9q33.3	ANGPTL2	rs11795066-?	NR	1E-15		0.1037	[0.078-0.129] unit increase	Affymetrix, Illumina [up to 40000000] (imputed)	N
1575	chr9	129863167	129863168	rs11795066	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	9q33.3	RALGPS1	rs11795066-G	0.602	2E-18		0.114	[0.089-0.139] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1575	chr9	129863544	129863545	rs2787594	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	9q33.3		rs2787594-?	NR	6E-9				NR [~ 8900000] (imputed)	N
1575	chr9	129891748	129891749	rs1281154	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	9q33.3	NR	rs1281154-?	NR	2E-8				Illumina [7760689] (imputed)	N
1576	chr9	129897993	129897994	rs1001138	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	9q33.3		rs1001138-C	0.26	7E-15		7.79	z score increase	Affymetrix [9061022] (imputed)	N
1576	chr9	129917823	129917824	rs10465114	34450027	Boer CG	2021-08-24	Cell	Deciphering osteoarthritis genetics across 826,690 individuals from 9 populations.	Osteoarthritis (hip)	36,445 European ancestry cases, 316,943 European ancestry controls	NA	9q33.3		rs10465114-A	0.2203	9E-9		1.0644945	[1.041994216-1.08748056]	Affymetrix, Illumina [NR] (imputed)	N
1576	chr9	129940378	129940379	rs3739556	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Intraocular pressure	101,939 European ancestry cases	NA	9q33.3	NR	rs3739556-C		7E-17		0.12	[0.1-0.14] unit increase	NR [NR]	N
1576	chr9	129940415	129940416	rs3739555	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	9q33.3	RALGPS1	rs3739555-T	0.8261	9E-11		0.117	[0.081-0.153] unit decrease	Affymetrix [~ 11900000] (imputed)	N
1576	chr9	129944670	129944671	rs146196583	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	9q33.3	RALGPS1	rs146196583-C	0.6836	1E-17		0.137	[0.11-0.17] unit decrease	Affymetrix [~ 11900000] (imputed)	N
1576	chr9	129945846	129945847	rs3780327	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	9q33.3	ANGPTL2, RALGPS1	rs3780327-A	0.224097	2E-8	(males)	0.01999	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1576	chr9	129945846	129945847	rs3780327	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	9q33.3	ANGPTL2, RALGPS1	rs3780327-A	0.224097	1E-9		0.01296	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1576	chr9	129945846	129945847	rs3780327	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	9q33.3	ANGPTL2, RALGPS1	rs3780327-A	0.224097	3E-13		0.01647	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1576	chr9	129945846	129945847	rs3780327	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	9q33.3	ANGPTL2, RALGPS1	rs3780327-A	0.224097	1E-9	(males)	0.02196	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1576	chr9	129954333	129954334	rs10819272	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Alcohol consumption (drinks per week)	414,343 European ancestry individuals	NA	9q33.3	GARNL3	rs10819272-T	0.5742	1E-8		0.012831995	[0.0084-0.0173] unit increase	Affymetrix [11514936] (imputed)	N
1576	chr9	129966896	129966897	rs10760480	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	9q33.3		rs10760480-T	0.18	2E-9		5.97	z score increase	Affymetrix [9061022] (imputed)	N
1577	chr9	130033546	130033547	rs913351	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Lewy body disease	up to 3,526 individuals	NA	9q33.3	GARNL3	rs913351-G	0.9798	9E-6	(Ordinal I)	0.811	[0.45-1.17] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1577	chr9	130107963	130107964	rs4130590	18711365	Ferreira MA	2008-08-17	Nat Genet	Collaborative genome-wide association analysis supports a role for ANK3 and CACNA1C in bipolar disorder.	Bipolar disorder	4,387 European ancestry cases, 6,209 European ancestry controls	NA	9q33.3	NR	rs4130590-?	0.56	3E-6		1.16	[NR]	Affymetrix [1769948] (imputed)	N
1577	chr9	130109745	130109746	rs7041940	20351715	Liu Y	2010-03-30	Mol Psychiatry	Meta-analysis of genome-wide association data of bipolar disorder and major depressive disorder.	Bipolar disorder	4,387 European and unknown ancestry cases, 6,209 European and unknown ancestry controls	NA	9q33.3	GARNL3, SLC2A8	rs7041940-?	NR	3E-6				Affymetrix [1769948] (imputed)	N
1577	chr9	130110410	130110411	rs7029536	23319000	Luykx JJ	2013-01-15	Mol Psychiatry	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA)	up to 398 European ancestry individuals	NA	9q33.3	GARNL3, SLC2A8	rs7029536-T	NR	5E-6		0.2261	unit decrease	Illumina [5767231] (imputed)	N
1578	chr9	130166381	130166382	rs10819287	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	9q33.3	NR	rs10819287-C	NR	3E-9	(GEE model)	1.1125	[0.75-1.48] unit increase	NR [NR] (imputed)	N
1578	chr9	130167786	130167787	rs115668237	27777418	Wong ML	2016-10-25	Mol Psychiatry	The PHF21B gene is associated with major depression and modulates the stress response.	Major depressive disorder	203 Mexican American cases, 196 Mexican American controls	NA	9q33.3	SLC2A8	rs115668237-?	NR	6E-6				Illumina [83898]	N
1578	chr9	130231899	130231899	rs11462415	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	9q33.3	LRSAM1	rs11462415-GA	0.633199	2E-9		0.0136938	[0.0094-0.0179] unit decrease	Affymetrix [93095623] (imputed)	N
1578	chr9	130231899	130231899	rs11462415	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	9q33.3	NR	rs11462415-I	0.632905	2E-10		0.013405	[0.0093-0.0175] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
1578	chr9	130271665	130271666	rs2244843	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	9q34.11		rs2244843-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1578	chr9	130284651	130284652	rs2251551	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	9q34.11	FAM129B	rs2251551-G	0.591652	1E-9		0.013985336	[0.0095-0.0185] unit decrease	Affymetrix [93095623] (imputed)	N
1578	chr9	130284651	130284652	rs2251551	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	9q34.11	FAM129B	rs2251551-G	0.591622	4E-11		0.015110734	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1579	chr9	130286427	130286428	rs1891732	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	9q34.11	FAM129B	rs1891732-A	0.651523	8E-10		0.014356433	[0.0098-0.0189] unit decrease	Affymetrix [93095623] (imputed)	N
1579	chr9	130286427	130286428	rs1891732	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q34.11	NR	rs1891732-A	0.587666	5E-13				Affymetrix, Illumina [24588908] (imputed)	N
1579	chr9	130286427	130286428	rs1891732	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	9q34.11	NR	rs1891732-A	0.652069	3E-15		0.015465	[0.012-0.019] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1579	chr9	130287562	130287562	rs10682452	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	9q34.11		rs10682452-AGAG	NR	2E-12		0.0157	[0.011-0.02] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1579	chr9	130289614	130289615	rs2243558	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	9q34.11		rs2243558-?	NR	9E-10				NR [~ 8900000] (imputed)	N
1579	chr9	130309027	130309028	rs1891730	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	9q34.11	FAM129B	rs1891730-T	0.6157	3E-12		0.1785	[0.13-0.23] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1579	chr9	130320282	130320283	rs2491105	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	9q34.11	FAM129B	rs2491105-T	0.767711	9E-26		0.0231404	[0.019-0.027] unit decrease	NR [13737936] (imputed)	N
1579	chr9	130320556	130320557	rs72767980	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	9q34.11		rs72767980-?	NR	5E-27				NR [~ 8900000] (imputed)	N
1579	chr9	130320556	130320557	rs72767980	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	9q34.11		rs72767980-?	NR	1E-23		0.0286656	[0.023-0.034] unit decrease	Affymetrix [20259828] (imputed)	N
1579	chr9	130320556	130320557	rs72767980	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	9q34.11	FAM129B	rs72767980-C	0.832327	2E-10	(women)	0.0411468	[0.028-0.054] unit decrease	NR [17166351] (imputed)	N
1579	chr9	130320556	130320557	rs72767980	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	9q34.11	FAM129B	rs72767980-C	0.832276	1E-10		0.0319678	[0.023-0.041] unit decrease	NR [17166351] (imputed)	N
1579	chr9	130323484	130323485	rs2252730	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	9q34.11		rs2252730-T	0.4924	7E-9		0.12789854	[0.084-0.172] mmHg increase	Affymetrix, Illumina [242865] (imputed)	N
1579	chr9	130327142	130327143	rs776074878	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	9q34.11	NR	rs776074878-CA	0.691008	4E-10		0.020833	[0.014-0.027] unit increase	Affymetrix [16580851] (imputed)	N
1579	chr9	130335417	130335418	rs10760490	32733355	Ryu HS	2020-07-07	Front Neurol	Genomic Analysis Identifies New Loci Associated With Motor Complications in Parkinson's Disease.	Motor fluctuations in levodopa treated Parkinson's disease	219 Korean ancestry cases, 522 Korean ancestry controls	NA	9q34.11	FAM129B	rs10760490-A	0.03	7E-6		2.93	[1.80-4.77]	Affymetrix [583535] (imputed)	N
1579	chr9	130335728	130335728	rs35326378	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	9q34.11	NR	rs35326378-CTTT	0.670594	1E-8		0.00798721	[0.0052-0.0107] unit increase	Affymetrix [16578495] (imputed)	N
1579	chr9	130346517	130346518	rs12551781	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Acute pancreatitis	827 East Asian ancestry cases, 177,471 East Asian ancestry controls	NA	9q34.11		rs12551781-C	0.050034996	4E-8		0.6683814	[0.43-0.91] unit increase	Illumina [13429917] (imputed)	N
1579	chr9	130371052	130371053	rs2039203	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9q34.11	NR	rs2039203-T	0.06969	2E-8	(EIF2S3)	0.01947	NR unit increase	Illumina [1671387] (imputed)	N
1579	chr9	130371106	130371107	rs2039204	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	9q34.11		rs2039204-A	0.5296	5E-9		0.0082	[0.0055-0.0109] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1579	chr9	130372486	130372487	rs1573178	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	9q34.11		rs1573178-T	0.4707	6E-10	(conditional-joint)	0.0087	[0.006-0.0114] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1579	chr9	130385169	130385170	rs72769820	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ST6GALNAC6	5,356 Icelandic ancestry individuals	NA	9q34.11		rs72769820-C	0.04022	4E-14		0.347456	[0.26-0.44] unit increase	Illumina [7506463] (imputed)	N
1579	chr9	130392953	130392954	rs10819303	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	9q34.11	Intergenic	rs10819303-A	0.4105	1E-8	(MTAG)	0.0096	[0.0063-0.0129] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1579	chr9	130392953	130392954	rs10819303	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	9q34.11	Intergenic	rs10819303-A	0.412	1E-9	(MTAG)	0.0081	[0.0056-0.0106] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1580	chr9	130430115	130430116	rs2241167	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	9q34.11	NR	rs2241167-A	NR	1E-8		1.038	[1.02-1.05]	Affymetrix, Illumina [29235255] (imputed)	N
1580	chr9	130446835	130446836	rs117911387	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	9q34.11	STXBP1	rs117911387-G	0.953645	2E-13		0.0245792	[0.018-0.031] unit decrease	Affymetrix [12370749]	N
1580	chr9	130477767	130477768	rs504434	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	9q34.11	BC032117	rs504434-G	0.449567	3E-22	(N-formylmethionine)	0.215	[0.17-0.26] unit increase	Illumina [13039987] (imputed)	N
1580	chr9	130487156	130487157	rs77630455	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Pursuit maintenance gain	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	9q34.11	TTC16	rs77630455-G	0.01069	4E-7				Illumina [4404269] (imputed)	N
1580	chr9	130489742	130489743	rs13298768	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	9q34.11		rs13298768-A	0.5492	9E-11		0.14182302	[0.098-0.186] mmHg increase	Affymetrix, Illumina [242865] (imputed)	N
1580	chr9	130489742	130489743	rs13298768	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals, 21,077 African American individuals, 33,689 South Asian ancestry individuals, 4,586 Hispanic individuals	354,096 European ancestry individuals, 63,282 African American individuals, 4,792 East Asian ancestry individuals, 22,802 Hispanic individuals, 2,695 Native American ancestry individuals	9q34.11		rs13298768-A	0.5617	9E-9		0.08251096	[0.053-0.112] mmHg increase	Affymetrix, Illumina [247315] (imputed)	N
1580	chr9	130504069	130504070	rs514024	23568457	Wade TD	2013-04-09	Int J Eat Disord	Genetic variants associated with disordered eating.	Eating disorders (purging via substances)	600 European ancestry female cases, 1,921 European ancestry female controls	NA	9q34.11	PKN3, SET, WDR34, ZDHHC12, ZER1	rs514024-A	0.572	5E-6		0.061	[0.036-0.086] unit increase	Illumina [6150213] (imputed)	N
1580	chr9	130521563	130521564	rs4837181	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	9q34.11	ENG	rs4837181-C	0.98203125	8E-9	(ENG, 4908_6_1)	0.5338352	[0.35-0.71] unit decrease	Illumina [> 1000000] (imputed)	N
1580	chr9	130526604	130526605	rs10739694	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	9q34.11	SH2D3C	rs10739694-G	0.588	8E-11		0.02352142	[0.016-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
1580	chr9	130527676	130527677	rs10739695	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	9q34.11	SH2D3C	rs10739695-G	0.5742	8E-11		0.02339087	[0.016-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1580	chr9	130528547	130528548	rs4836579	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	9q34.11	SH2D3C	rs4836579-T	0.573068	3E-10		0.014177375	[0.0098-0.0186] unit decrease	Affymetrix [93095623] (imputed)	N
1580	chr9	130532638	130532639	rs2417054	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	9q34.11	SH2D3C	rs2417054-C	0.57407	2E-12		0.015807055	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1580	chr9	130532638	130532639	rs2417054	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	9q34.11	SH2D3C	rs2417054-C	0.574005	3E-14		0.017013883	[0.013-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1580	chr9	130532771	130532772	rs2417055	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	9q34.11	SH2D3C	rs2417055-C	0.429111	1E-15		0.018268473	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1580	chr9	130542639	130542640	rs183995738	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	9q34.11	ST6GALNAC6	rs183995738-C	0.98703125	3E-11	(ST6GALNAC6, 7228_2_3)	0.7147909	[0.5-0.93] unit decrease	Illumina [> 1000000] (imputed)	N
1581	chr9	130607358	130607359	rs41492548	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	9q34.11	ENG	rs41492548-A	0.236018	6E-9		0.01610222	[0.011-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1581	chr9	130612664	130612665	rs12156525	33597122	Verbitsky M	2021-02-17	J Am Soc Nephrol	Copy Number Variant Analysis and Genome-wide Association Study Identify Loci with Large Effect for Vesicoureteral Reflux.	Vesicoureteral reflux	1,395 European ancestry cases, 5,366 European ancestry controls	NA	9q34.11	NR	rs12156525-C	0.1034	9E-7	(recessive, male)	26.690294	[7.19547243676836-99.0027868759005]	Affymetrix, Illumina [6131010] (imputed)	N
1581	chr9	130619636	130619637	rs7865146	20694148	Zabaneh D	2010-08-04	PLoS One	A genome-wide association study of the metabolic syndrome in Indian Asian men.	Metabolic syndrome	2,554 Indian Asian ancestry individuals	2,240 Indian Asian ancestry individuals	9q34.11	ENG	rs7865146-A	0.37	1E-6	(DBP)	1.19	[0.71-1.67] mmHg decrease	Illumina [308011]	N
1581	chr9	130622945	130622946	rs4837197	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	9q34.11		rs4837197-C	NR	1E-21		0.0226	[0.018-0.027] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
1581	chr9	130622945	130622946	rs4837197	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	9q34.11		rs4837197-C	NR	5E-31		0.0257	[0.021-0.03] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
1581	chr9	130622945	130622946	rs4837197	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	9q34.11		rs4837197-C	NR	2E-32		0.027	[0.022-0.032] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
1581	chr9	130622945	130622946	rs4837197	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	9q34.11		rs4837197-C	0.828572	5E-40		0.038820446	[0.033-0.045] unit decrease	Affymetrix [93095623] (imputed)	N
1581	chr9	130622945	130622946	rs4837197	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	9q34.11		rs4837197-C	0.828582	4E-39		0.038366172	[0.033-0.044] unit decrease	Affymetrix [93095623] (imputed)	N
1581	chr9	130622945	130622946	rs4837197	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	9q34.11	NR	rs4837197-C	0.82646	5E-52		0.038881	[0.034-0.044] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
1581	chr9	130622945	130622946	rs4837197	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	9q34.11		rs4837197-?	NR	3E-23				NR [~ 8900000] (imputed)	N
1581	chr9	130628499	130628500	rs72752884	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	9q34.11	AK1, RP11-203J24.9, MIR4672	rs72752884-T	0.114382	4E-22		0.033764888	[0.027-0.041] unit increase	Affymetrix [93095623] (imputed)	N
1581	chr9	130628523	130628524	rs67145503	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q34.11	NR	rs67145503-A	0.115528	4E-32				Affymetrix, Illumina [24332387] (imputed)	N
1581	chr9	130628523	130628524	rs67145503	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	9q34.11	NR	rs67145503-A	0.115817	6E-30		0.034652	[0.029-0.041] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
1581	chr9	130628523	130628524	rs67145503	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	9q34.11	AK1	rs67145503-A		4E-34		0.04	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
1581	chr9	130628523	130628524	rs67145503	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	9q34.11	AK1, MIR4672, RP11-203J24.9	rs67145503-A	0.1169	1E-10		0.03607593	[0.025-0.047] unit increase	Affymetrix [~ 2500000] (imputed)	N
1581	chr9	130628523	130628524	rs67145503	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	9q34.11	AK1, MIR4672, RP11-203J24.9	rs67145503-A	0.1168	2E-18		0.04907607	[0.038-0.06] unit increase	Affymetrix [~ 2500000] (imputed)	N
1581	chr9	130628523	130628524	rs67145503	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	9q34.11	AK1, MIR4672, RP11-203J24.9	rs67145503-A	0.1169	2E-17		0.04743382	[0.037-0.058] unit increase	Affymetrix [~ 2500000] (imputed)	N
1581	chr9	130629138	130629139	rs913987	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q34.11	NR	rs913987-G	0.830943	9E-53				Affymetrix, Illumina [24653286] (imputed)	N
1581	chr9	130629138	130629139	rs913987	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	9q34.11	NR	rs913987-G	0.824795	2E-52		0.039017	[0.034-0.044] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
1581	chr9	130629138	130629139	rs913987	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q34.11	NR	rs913987-G	0.830438	2E-52				Affymetrix, Illumina [24558453] (imputed)	N
1581	chr9	130633175	130633176	rs77306199	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	9q34.11	AK1	rs77306199-C	0.94734375	1E-7	(AK1, 5012_67_1)	0.2907385	[0.18-0.4] unit increase	Illumina [> 1000000] (imputed)	N
1581	chr9	130668956	130668957	rs10819317	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	P-selectin glycoprotein ligand 1 levels	21,758 European ancestry individuals	9,173 individuals	9q34.11		rs10819317-A	0.82	8E-27		0.1402	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1581	chr9	130672220	130672221	rs10739700	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9q34.11		rs10739700-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1582	chr9	130681891	130681892	rs4837205	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cataracts	39,519 European ancestry cases, 452,358 European ancestry controls, 38,194 East Asian ancestry cases, 140,532 East Asian ancestry controls	NA	9q34.11		rs4837205-C	NR	8E-9		0.0453	[0.03-0.061] unit decrease	Affymetrix, Illumina [25845331] (imputed)	N
1582	chr9	130681895	130681896	rs4836591	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q34.11	NR	rs4836591-A	0.671428	2E-21				Affymetrix, Illumina [23467995] (imputed)	N
1582	chr9	130684662	130684663	rs55782000	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	9q34.11	NR	rs55782000-G	NR	4E-10		0.0507	[0.035-0.067] unit decrease	Affymetrix [9000000] (imputed)	N
1582	chr9	130702476	130702477	rs3739821	27064256	Khor CC	2016-04-04	Nat Genet	Genome-wide association study identifies five new susceptibility loci for primary angle closure glaucoma.	Glaucoma (primary angle closure)	5,612 East Asian ancestry cases, 12,451 East Asian ancestry controls, 337 Indian ancestry cases, 2,538 Indian ancestry controls, 576 European ancestry cases, 4,940 European ancestry controls	430 European ancestry cases, 3,133 European ancestry controls, 90 Nepalese ancestry cases, 205 Nepalese ancestry controls, 2,340 East Asian ancestry cases, 3,865 East Asian ancestry controls, 628 South Asian ancestry cases, 552 South Asian ancestry controls, 99 Latin American cases, 224 Latin American controls, 391 Saudi Arabian ancestry cases, 1,659 Saudi Arabian ancestry controls	9q34.11	DPM2, FAM102A	rs3739821-G		8E-12		1.15	[NR]	Illumina [5245080] (imputed)	N
1582	chr9	130702476	130702477	rs3739821	27064256	Khor CC	2016-04-04	Nat Genet	Genome-wide association study identifies five new susceptibility loci for primary angle closure glaucoma.	Glaucoma (primary angle closure)	5,612 East Asian ancestry cases, 12,451 East Asian ancestry controls, 337 Indian ancestry cases, 2,538 Indian ancestry controls, 576 European ancestry cases, 4,940 European ancestry controls	430 European ancestry cases, 3,133 European ancestry controls, 90 Nepalese ancestry cases, 205 Nepalese ancestry controls, 2,340 East Asian ancestry cases, 3,865 East Asian ancestry controls, 628 South Asian ancestry cases, 552 South Asian ancestry controls, 99 Latin American cases, 224 Latin American controls, 391 Saudi Arabian ancestry cases, 1,659 Saudi Arabian ancestry controls	9q34.11	DPM2, FAM102A	rs3739821-G		5E-11	(Asian)	1.15	[NR]	Illumina [5245080] (imputed)	N
1582	chr9	130705119	130705120	rs1043060	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	9q34.11		rs1043060-T	NR	9E-13		0.0152	[0.011-0.019] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
1582	chr9	130723267	130723269	rs149884110	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	9q34.11		rs149884110-A	NR	1E-11		0.0169	[0.012-0.022] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
1582	chr9	130723418	130723419	rs62585312	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	9q34.11	FAM102A	rs62585312-C	0.9346	4E-15		0.0532	[0.04-0.067] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1582	chr9	130723418	130723419	rs62585312	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	9q34.11	NR	rs62585312-C	0.0673	6E-8	(women)	0.0531	[0.034-0.072] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1582	chr9	130729152	130729153	rs10987787	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	9q34.11	NR	rs10987787-G	0.767954	2E-18		0.01967	[0.015-0.024] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1582	chr9	130749431	130749432	rs10987803	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	154,355 East Asian ancestry individuals	NA	9q34.11		rs10987803-C	0.176344	2E-8		0.0253665	[0.017-0.034] unit increase	Illumina [13479091] (imputed)	N
1582	chr9	130756221	130756222	rs56379622	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	9q34.11		rs56379622-A	NR	3E-14		0.0374	[0.028-0.047] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
1582	chr9	130759402	130759403	rs541341417	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	9q34.11	NR	rs541341417-C	0.199506	1E-11		0.019237472	[0.014-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1582	chr9	130759402	130759403	rs541341417	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	9q34.11		rs541341417-C	0.19952	8E-12		0.019376405	[0.014-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1582	chr9	130763466	130763466	rs539568761	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	9q34.11		rs539568761-G	0.244966	1E-12		0.019523175	[0.014-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1582	chr9	130764954	130764955	rs7874991	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	9q34.11		rs7874991-?	NR	3E-10				NR [~ 8900000] (imputed)	N
1582	chr9	130768943	130768944	rs10987827	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	9q34.11	NR	rs10987827-T	0.248605	8E-13		0.016559	[0.012-0.021] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
1582	chr9	130770275	130770276	rs7874551	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	9q34.11	NR	rs7874551-T	0.05	2E-15		0.0352	[0.026-0.044] unit decrease	NR [NR]	N
1582	chr9	130770483	130770484	rs56106601	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	9q34.11	FAM102A	rs56106601-A	0.9455	3E-11		0.060781	[0.043-0.079] mg/dL increase	Affymetrix, Illumina [8217339] (imputed)	N
1582	chr9	130771310	130771311	rs73669624	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	95,119 East Asian ancestry individuals	NA	9q34.11		rs73669624-A	0.178391	3E-9		0.034163	[0.023-0.045] unit increase	Illumina [13471440] (imputed)	N
1582	chr9	130773935	130773936	rs947627	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q34.11	NR	rs947627-A	0.753765	5E-14				Affymetrix, Illumina [23114412] (imputed)	N
1582	chr9	130777949	130777950	rs4836600	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q34.11	NR	rs4836600-T	0.710271	3E-14				Affymetrix, Illumina [24649327] (imputed)	N
1582	chr9	130778737	130778738	rs10987830	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Monocyte count	62,076 Japanese ancestry individuals	NA	9q34.11	FAM102A, NAIF1	rs10987830-?	NR	2E-10		0.05428	[0.038-0.071] unit increase novel	Illumina [6108953] (imputed)	N
1582	chr9	130778737	130778738	rs10987830	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Albumin-globulin ratio	98,626 Japanese ancestry individuals	NA	9q34.11	FAM102A, NAIF1	rs10987830-?	NR	3E-8		0.0376	[0.024-0.051] unit decrease novel	Illumina [6108953] (imputed)	N
1582	chr9	130779697	130779698	rs10819335	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	88,929 East Asian ancestry individuals	NA	9q34.11	NR	rs10819335-T	0.831148	5E-10		0.040865	[0.028-0.054] SD units decrease	Affymetrix, Illumina [16289044] (imputed)	N
1583	chr9	130834949	130834950	rs10987861	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ENG	5,361 Icelandic ancestry individuals	NA	9q34.11		rs10987861-G	0.01379	8E-12		0.540226	[0.39-0.69] unit increase	Illumina [7506463] (imputed)	N
1583	chr9	130900938	130900939	rs12237878	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (neutrophil)	21,347 Hispanic or Latin American individuals	NA	9q34.11		rs12237878-C	0.9643	1E-8		0.1943	[0.13-0.26] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1583	chr9	130901644	130901645	rs28613009	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (neutrophil)	16,201 African American or Afro-Caribbean individuals	NA	9q34.11		rs28613009-T	0.5321	8E-8		0.0776	[0.043-0.112] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1584	chr9	130976556	130976557	rs2502731	18839057	Lesch KP	2008-10-07	J Neural Transm (Vienna)	Molecular genetics of adult ADHD: converging evidence from genome-wide association and extended pedigree linkage studies.	Attention deficit hyperactivity disorder	343 European ancestry cases, 250 European ancestry controls, 54 controls	NA	9q34.11	DNM1	rs2502731-?	NR	2E-6				Affymetrix [504219]	N
1584	chr9	130976665	130976666	rs78156728	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	9q34.11		rs78156728-G	NR	8E-9		0.088	[0.058-0.118] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1584	chr9	130981144	130981145	rs3003574	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	9q34.11	DNM1	rs3003574-A	0.801338	2E-11		0.01889988	[0.013-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1584	chr9	130988615	130988616	rs3003612	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	9q34.11	NR	rs3003612-?	NR	5E-9				Affymetrix [~ 8270000] (imputed)	N
1584	chr9	130988615	130988616	rs3003612	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	9q34.11	NR	rs3003612-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
1584	chr9	130988615	130988616	rs3003612	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	9q34.11	NA	rs3003612-T	0.5537	2E-10		0.0109	[0.0076-0.0142] unit decrease	NR [~ 27400000] (imputed)	N
1584	chr9	131015278	131015279	rs2267958	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	9q34.11		rs2267958-A	NR	3E-12		0.0134	[0.0097-0.0171] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1584	chr9	131015278	131015279	rs2267958	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	9q34.11		rs2267958-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1584	chr9	131015278	131015279	rs2267958	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9q34.11		rs2267958-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1584	chr9	131018638	131018639	rs4734	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	9q34.11	NA	rs4734-T	0.8402	2E-13		0.0176	[0.013-0.022] unit decrease	NR [~ 27400000] (imputed)	N
1584	chr9	131026107	131026108	rs113132247	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		9q34.11	GOLGA2	rs113132247-G	0.846977	1E-10		0.0123286	[0.0086-0.0161] unit decrease	Affymetrix [12370749]	N
1584	chr9	131026107	131026108	rs113132247	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	9q34.11	NR	rs113132247-?	NR	5E-12				Affymetrix [~ 8270000] (imputed)	N
1584	chr9	131026107	131026108	rs113132247	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	9q34.11		rs113132247-?	NR	3E-12				NR [~ 8900000] (imputed)	N
1584	chr9	131027981	131027982	rs7871866	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	9q34.11	NA	rs7871866-C	0.1596	8E-14		0.0179	[0.013-0.023] unit increase	NR [~ 27400000] (imputed)	N
1584	chr9	131042733	131042734	rs2270204	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	9q34.11	NR	rs2270204-T	NR	5E-9		0.018	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
1584	chr9	131042733	131042734	rs2270204	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	9q34.11	SWI5	rs2270204-G	0.27	9E-12		0.018	[0.012-0.024] unit increase	Illumina [6108953] (imputed)	N
1584	chr9	131042733	131042734	rs2270204	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	9q34.11	MIR3960, MIR2861, CDK9, FPGS, ENG, AK1, MIR4672, ST6GALNAC6, ST6GALNAC4, DPM2, FAM102A, PIP5KL1, NAIF1, SLC25A25, LOC100289019, PTGES2, LOC389791, C9orf16, CIZ1, MIR3154, GOLGA2, DNM1, MIR199B, COQ4, TRUB2, SLC27A4, URM1, MIR219-2, MIR2964A, CERCAM, ODF2, GLE1, SPTAN1, WDR34, SET, ZER1, PKN3, ZDHHC12, LOC100506100	rs2270204-T	0.752263536127141	5E-9		0.019068187	unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1584	chr9	131042733	131042734	rs2270204	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	9q34.11	SWI5	rs2270204-G	0.273	3E-7		0.018	[0.011-0.025] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1584	chr9	131042733	131042734	rs2270204	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	9q34.11	SWI5	rs2270204-G	0.251	6E-6	(EA, men)	0.022	[0.012-0.032] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1584	chr9	131042733	131042734	rs2270204	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	9q34.11	SWI5	rs2270204-G	0.251	3E-7	(EA)	0.019	[0.012-0.026] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1584	chr9	131051315	131051316	rs41313321	27149984	Degenhardt F	2016-05-05	Hum Mol Genet	Genome-wide association study of serum coenzyme Q10 levels identifies susceptibility loci linked to neuronal diseases.	Coenzyme Q10 levels	up to 1,300 European ancestry individuals	NA	9q34.11	DNM1	rs41313321-A		3E-6		0.045	[0.026-0.064] unit increase	Affymetrix, Illumina [up to 17017474] (imputed)	N
1585	chr9	131084627	131084628	rs11539570	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	9q34.11	TRUB2, COQ4	rs11539570-A	0.0070	7E-6	(WC change )	0.02	[NR] cm/y increase	Illumina [899892]	N
1585	chr9	131158937	131158938	rs59192760	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	9q34.11	NR	rs59192760-C	0.22	7E-8	(Japanese, Male)	0.032	[0.02-0.044] unit increase	Illumina [6108953] (imputed)	N
1585	chr9	131186782	131186783	rs61732491	26606652	Alarcon-Riquelme ME	2015-11-25	Arthritis Rheumatol	Genome-Wide Association Study in an Amerindian Ancestry Population Reveals Novel Systemic Lupus Erythematosus Risk Loci and the Role of European Admixture.	Systemic lupus erythematosus	862 Native American ancestry-enriched North American cases, 531 Native American ancestry-enriched South American cases, 1,973 Native American ancestry-enriched North American controls, 344 Native American ancestry-enriched South American controls	NA	9q34.11	CERCAM	rs61732491-T	0.006	2E-6		3.36	[2.03-5.55]	Illumina [580483] (imputed)	N
1586	chr9	131210409	131210410	rs7869756	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	9q34.11	RP11-339B21.8	rs7869756-A	0.8088	1E-10		0.1446	[0.1-0.19] unit decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1587	chr9	131403220	131403221	rs12380424	24144296	Cheng CY	2013-08-08	Am J Hum Genet	Nine loci for ocular axial length identified through genome-wide association studies, including shared loci with refractive error.	Axial length	12,531 European ancestry individuals	8,216 Asian ancestry individuals	9q34.11	PKN3, SET, WDR34, ZDHHC12, ZER1, SPTAN1, GLE1	rs12380424-T	0.0282	6E-6		0.2822	[0.16-0.4] unit increase	Illumina [2500000] (imputed)	N
1587	chr9	131453853	131453854	rs72758836	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	9q34.11	NR	rs72758836-A	0.993445	1E-11		0.090993	[0.065-0.117] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
1588	chr9	131465480	131465481	rs13283282	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	9q34.11		rs13283282-G	NR	1E-11		0.0206	[0.015-0.026] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1588	chr9	131465480	131465481	rs13283282	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	9q34.11		rs13283282-G	NR	1E-13		0.0236	[0.017-0.03] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
1588	chr9	131465480	131465481	rs13283282	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	9q34.11		rs13283282-G	NR	1E-52		0.0439	[0.038-0.05] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
1588	chr9	131465480	131465481	rs13283282	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	133,471 East Asian ancestry individuals	NA	9q34.11		rs13283282-G	0.085471	1E-9		0.0430475	[0.029-0.057] unit decrease	Illumina [13476165] (imputed)	N
1588	chr9	131465480	131465481	rs13283282	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	9q34.11	PKN3	rs13283282-C	0.853806	5E-59		0.0114186	[0.01-0.0128] unit increase	Affymetrix [13995440] (imputed)	N
1588	chr9	131465480	131465481	rs13283282	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	9q34.11	NR	rs13283282-G	0.146	2E-10		0.001994	[0.0014-0.0026] unit decrease	Affymetrix [NR] (imputed)	N
1588	chr9	131465480	131465481	rs13283282	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	9q34.11	PKN3	rs13283282-G	0.146084	2E-15		0.024827348	[0.019-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
1588	chr9	131465480	131465481	rs13283282	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q34.11	NR	rs13283282-G	0.130574	4E-19				Affymetrix, Illumina [24649327] (imputed)	N
1588	chr9	131465480	131465481	rs13283282	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	9q34.11	PKN3	rs13283282-C	0.853847	3E-12		0.0206702	[0.015-0.026] unit increase	Affymetrix [NR] (imputed)	N
1588	chr9	131465480	131465481	rs13283282	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	9q34.11	PKN3	rs13283282-C	0.853842	5E-9		0.0172496	[0.011-0.023] unit increase	Affymetrix [NR] (imputed)	N
1588	chr9	131465480	131465481	rs13283282	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	9q34.11	PKN3	rs13283282-?	NR	3E-14		0.0276	[0.021-0.034] unit decrease	Affymetrix [5701386] (imputed)	N
1588	chr9	131465480	131465481	rs13283282	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	9q34.11		rs13283282-?	NR	4E-17				NR [~ 8900000] (imputed)	N
1588	chr9	131466488	131466489	rs13289095	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	9q34.11		rs13289095-T	NR	5E-13		0.0216	[0.016-0.027] unit decrease	Affymetrix, Illumina [20536134] (imputed)	N
1588	chr9	131466488	131466489	rs13289095	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	9q34.11		rs13289095-T	NR	3E-13		0.0216	[0.016-0.027] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1588	chr9	131466488	131466489	rs13289095	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	9q34.11		rs13289095-T	NR	2E-12		0.0222	[0.016-0.028] unit decrease	Affymetrix, Illumina [20521447] (imputed)	N
1588	chr9	131466488	131466489	rs13289095	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Gamma glutamyl transferase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	9q34.11	PKN3	rs13289095-?		6E-9		0.0397	[0.026-0.053] unit increase	Illumina [31500000] (imputed)	N
1588	chr9	131466488	131466489	rs13289095	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	9q34.11	PKN3	rs13289095-T	0.145884	8E-16		0.025323756	[0.019-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
1588	chr9	131466488	131466489	rs13289095	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	9q34.11	NR	rs13289095-T	0.144834	2E-18		0.024208	[0.019-0.03] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1588	chr9	131466488	131466489	rs13289095	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q34.11	NR	rs13289095-T	0.135095	4E-20				Affymetrix, Illumina [23114412] (imputed)	N
1588	chr9	131466488	131466489	rs13289095	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	9q34.11	NR	rs13289095-T	0.145247	2E-18		0.025065	[0.019-0.031] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
1588	chr9	131466488	131466489	rs13289095	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	9q34.11	NR	rs13289095-G	0.85476	4E-8		0.0206541	[0.012-0.029] unit increase	Affymetrix [16577313] (imputed)	N
1588	chr9	131466488	131466489	rs13289095	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Gamma glutamyl transferase levels	118,309 Japanese ancestry individuals	NA	9q34.11	PKN3	rs13289095-?	NR	8E-10		0.04481	[0.031-0.059] unit decrease novel	Illumina [6108953] (imputed)	N
1588	chr9	131466488	131466489	rs13289095	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	9q34.11	PKN3	rs13289095-T	0.1453	6E-11		0.03391913	[0.024-0.044] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1588	chr9	131468739	131468740	rs9697210	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	9q34.11	PKN3	rs9697210-A	0.146041	1E-27		0.034566585	[0.028-0.041] unit decrease	Affymetrix [93095623] (imputed)	N
1588	chr9	131468739	131468740	rs9697210	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	9q34.11	PKN3	rs9697210-A	0.146044	2E-19		0.028502056	[0.022-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
1588	chr9	131468739	131468740	rs9697210	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q34.11	NR	rs9697210-A	0.13057	3E-24				Affymetrix, Illumina [24588908] (imputed)	N
1588	chr9	131468739	131468740	rs9697210	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	9q34.11	NR	rs9697210-A	0.144942	2E-24		0.02807	[0.023-0.033] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1588	chr9	131468739	131468740	rs9697210	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	9q34.11	NR	rs9697210-G	0.854176	9E-45		0.0159893	[0.014-0.018] unit increase	Affymetrix [16582909] (imputed)	N
1588	chr9	131468739	131468740	rs9697210	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	9q34.11	NR	rs9697210-G	0.853586	9E-20		0.0154973	[0.012-0.019] unit increase	Affymetrix [16585854] (imputed)	N
1588	chr9	131468739	131468740	rs9697210	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	9q34.11	NR	rs9697210-G	0.854799	5E-31		0.0179883	[0.015-0.021] unit increase	Affymetrix [16582621] (imputed)	N
1588	chr9	131468739	131468740	rs9697210	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	9q34.11	NR	rs9697210-G	0.854176	3E-39		0.0166914	[0.014-0.019] unit increase	Affymetrix [16582965] (imputed)	N
1588	chr9	131468739	131468740	rs9697210	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	9q34.11	NR	rs9697210-G	0.853586	2E-16		0.0161375	[0.012-0.02] unit increase	Affymetrix [16585866] (imputed)	N
1588	chr9	131468739	131468740	rs9697210	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	9q34.11	NR	rs9697210-G	0.854799	1E-29		0.0187441	[0.015-0.022] unit increase	Affymetrix [16582614] (imputed)	N
1588	chr9	131472801	131472802	rs138407416	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	9q34.11	NR	rs138407416-?	NR	6E-9				Affymetrix [~ 8270000] (imputed)	N
1588	chr9	131475582	131475583	rs72758841	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	9q34.11	PKN3	rs72758841-G	0.036	6E-6	(IGFBP-3 )	0.03	[NR] ng/mL increase	Illumina [899892]	N
1588	chr9	131483550	131483551	rs11539209	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Asthma	38,369 European ancestry cases, 411,131 European ancestry controls, 13,015 East Asian ancestry cases, 162,933 East Asian ancestry controls	NA	9q34.11		rs11539209-A	NR	2E-8		0.0837	[0.055-0.113] unit decrease	Affymetrix, Illumina [25837673] (imputed)	N
1588	chr9	131483550	131483551	rs11539209	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	9q34.11	ZDHHC12	rs11539209-T	0.92	4E-9				NR [> 9500000] (imputed)	N
1588	chr9	131483550	131483551	rs11539209	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	9q34.11	ZDHHC12	rs11539209-T	0.920527	1E-10		1.0740873	[1.05108988368768-1.09758781222079]	NR [9572556] (imputed)	N
1588	chr9	131483550	131483551	rs11539209	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	9q34.11	NR	rs11539209-T	0.92036	7E-13		1.0828371	[1.06-1.11]	Affymetrix [15688218] (imputed)	N
1588	chr9	131483550	131483551	rs11539209	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	9q34.11	PKN3, ZDHHC12	rs11539209-A	0.07964	2E-8				Affymetrix [15688218] (imputed)	N
1588	chr9	131483550	131483551	rs11539209	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	9q34.11		rs11539209-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1588	chr9	131483550	131483551	rs11539209	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	9q34.11		rs11539209-?	NR	8E-16				NR [~ 8900000] (imputed)	N
1588	chr9	131484525	131484526	rs10988105	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	9q34.11		rs10988105-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1588	chr9	131497831	131497832	rs3750329	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	9q34.11	NR	rs3750329-T	NR	2E-12		0.025	[0.018-0.032] unit decrease	Affymetrix [9000000] (imputed)	N
1588	chr9	131497831	131497832	rs3750329	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	9q34.11	NR	rs3750329-T	NR	2E-20		0.0348	[0.028-0.042] unit decrease	Affymetrix [9000000] (imputed)	N
1588	chr9	131497831	131497832	rs3750329	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	9q34.11	NR	rs3750329-T	NR	4E-12		0.0248	[0.018-0.032] unit decrease	Affymetrix [9000000] (imputed)	N
1588	chr9	131497831	131497832	rs3750329	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	9q34.11	NR	rs3750329-T	NR	2E-40		0.0475	[0.04-0.055] unit decrease	Affymetrix [9000000] (imputed)	N
1588	chr9	131505657	131505658	rs182291716	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	9q34.11	NR	rs182291716-?	NR	4E-6		0.776757	[0.45-1.11] unit increase	NR [13958389] (imputed)	N
1588	chr9	131510520	131510521	rs7865928	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	9q34.11	NR	rs7865928-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1588	chr9	131513369	131513370	rs13284665	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	9q34.11	ZER1	rs13284665-G	NR	7E-7	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1588	chr9	131513369	131513370	rs13284665	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	9q34.11	ZER1	rs13284665-G	NR	4E-8				Affymetrix, Illumina [NR] (imputed)	N
1588	chr9	131513369	131513370	rs13284665	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	9q34.11	ZER1	rs13284665-G	NR	3E-10				Affymetrix, Illumina [NR] (imputed)	N
1588	chr9	131513369	131513370	rs13284665	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	9q34.11	ZER1	rs13284665-G	NR	1E-8	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1588	chr9	131513369	131513370	rs13284665	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	9q34.11	ZER1	rs13284665-G	NR	7E-7		1.4	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1588	chr9	131513369	131513370	rs13284665	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	9q34.11	ZER1	rs13284665-G	NR	2E-6	(EA)	1.554	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1588	chr9	131513369	131513370	rs13284665	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	9q34.11	ZER1	rs13284665-G	NR	5E-6	(EA)	1.985	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1588	chr9	131513369	131513370	rs13284665	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	9q34.11	ZER1	rs13284665-G	NR	1E-6		1.679	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1588	chr9	131541741	131541742	rs564698311	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental extreme longevity (95 years and older)	1,339 middle-aged British cases, 40,934 middle-aged British controls	NA	9q34.11	NR	rs564698311-?	NR	1E-6		0.018217	[0.011-0.026] unit increase	Affymetrix [9658292] (imputed)	N
1588	chr9	131562231	131562232	rs2417125	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	9q34.11	TBC1D13	rs2417125-A	0.715983	4E-10		0.0132127	[0.0091-0.0174] unit increase	Affymetrix [NR] (imputed)	N
1588	chr9	131563539	131563540	rs7858732	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	9q34.11	NR	rs7858732-A	0.7513	7E-9		0.0119	[0.0078-0.016] unit decrease	NR [~ 27400000] (imputed)	N
1588	chr9	131567151	131567152	rs7044955	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	9q34.11		rs7044955-T	NR	2E-8		0.0148	[0.0097-0.0199] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
1588	chr9	131570177	131570178	rs45609236	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	9q34.11		rs45609236-C	NR	4E-8		0.0123	[0.008-0.0166] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
1588	chr9	131572026	131572027	rs15676	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	9q34.11	CCBL1	rs15676-A	0.71	1E-12	(indolelactate)	0.019	[0.013-0.025] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
1588	chr9	131573271	131573271	rs34589897	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	9q34.11	TBC1D13	rs34589897-G	0.739714	1E-11	(indolelactate)	0.177	[0.13-0.23] unit increase	Illumina [13039987] (imputed)	N
1588	chr9	131585068	131585069	rs2280843	29273807	Turcot V	2017-12-22	Nat Genet	Protein-altering variants associated with body mass index implicate pathways that control energy intake and expenditure in obesity.	Body mass index	up to 449,889 European ancestry individuals, up to 29,398 South Asian ancestry individuals, up to 27,610 African American individuals, up to 8,839 East Asian individuals, up to 10,772 Hispanic ancestry individuals	up to 196,766 European ancestry individuals	9q34.11	C9orf114	rs2280843-G	0.731	1E-7	(women)	0.0146	[0.0093-0.0199] unit increase	Illumina [246328]	N
1588	chr9	131593610	131593611	rs28748079	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	9q34.11	NR	rs28748079-?	NR	6E-9				Affymetrix [~ 8270000] (imputed)	N
1589	chr9	131601889	131601890	rs7849982	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	9q34.11	CCBL1	rs7849982-C	0.728157	4E-11	(2-hydroxyphenylacetate)	0.165	[0.12-0.21] unit increase	Illumina [13039987] (imputed)	N
1589	chr9	131601889	131601890	rs7849982	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	1,509 European ancestry individuals	9q34.11	CCBL1	rs7849982-C	0.728157	4E-11	(2-hydroxyphenylacetate)	0.165	[0.12-0.21] unit increase	Illumina [13039987] (imputed)	N
1589	chr9	131608785	131608786	rs2977993	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	9q34.11	NR	rs2977993-A	NR	2E-6		1.06	[NR]	Illumina [7158791] (imputed)	N
1589	chr9	131613190	131613191	rs12551834	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	9q34.11	C9orf114, LRRC8A	rs12551834-G	0.92	3E-9		1.058	[1.04-1.08]	Affymetrix, Illumina [8307659] (imputed)	N
1589	chr9	131645338	131645339	rs72758878	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	9q34.11	LRRC8A	rs72758878-T	0.00998600000000005	5E-9		0.06742997	[0.045-0.09] unit increase	Affymetrix [93095623] (imputed)	N
1589	chr9	131645338	131645339	rs72758878	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q34.11	NR	rs72758878-C	0.989659	2E-10				Affymetrix, Illumina [17210439] (imputed)	N
1589	chr9	131652501	131652502	rs10115869	31996736	Elsheikh SSM	2020-01-29	Sci Rep	Genome-Wide Association Study of Brain Connectivity Changes for Alzheimer's Disease.	Longitudinal brain connectivity change (characteristic path length)	57 European ancestry individuals	NA	9q34.11	NR	rs10115869-G	NR	5E-7		5.03	z score decrease	NR [9015039] (imputed)	N
1589	chr9	131659723	131659724	rs13297295	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	9q34.11		rs13297295-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1589	chr9	131671141	131671142	rs143836544	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Height	458,235 European ancestry individuals	NA	9q34.11		rs143836544-?	NR	3E-9		0.0604523	[0.04-0.081] unit decrease	NR [9800000] (imputed)	N
1589	chr9	131671141	131671142	rs143836544	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9q34.11		rs143836544-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1589	chr9	131684835	131684836	rs57294583	33838163	Luo S	2021-04-07	Kidney Int	Genome-wide association study of serum metabolites in the African American Study of Kidney Disease and Hypertension.	Serum metabolite concentrations in chronic kidney disease	619 African American individuals	NA	9q34.11	LRRC8A, PHYHD1, SH3GLB2	rs57294583-?	NR	2E-12	(2'-O-methylcytidine)	0.39	[NR] unit increase	Illumina [14760605] (imputed)	N
1589	chr9	131684835	131684836	rs57294583	33437055	Panyard DJ	2021-01-12	Commun Biol	Cerebrospinal fluid metabolomics identifies 19 brain-related phenotype associations.	2'-o-methylcytidine levels	291 European ancestry individuals	NA	9q34.11		rs57294583-A	0.5961	7E-44		0.1208	unit decrease	Illumina [7049691] (imputed)	N
1589	chr9	131684835	131684836	rs57294583	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	9q34.11	PHYHD1	rs57294583-A	0.548395	4E-189	(2'-O-methylcytidine)	0.668	[0.62-0.71] unit decrease	Illumina [13039987] (imputed)	N
1589	chr9	131684835	131684836	rs57294583	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	9q34.11	PHYHD1	rs57294583-A	0.548395	2E-230	(2'-O-methyluridine)	0.738	[0.69-0.78] unit decrease	Illumina [13039987] (imputed)	N
1589	chr9	131685014	131685015	rs55758160	33838163	Luo S	2021-04-07	Kidney Int	Genome-wide association study of serum metabolites in the African American Study of Kidney Disease and Hypertension.	Serum metabolite concentrations in chronic kidney disease	619 African American individuals	NA	9q34.11	LRRC8A, PHYHD1, SH3GLB2	rs55758160-?	NR	2E-42	(2'-O-methyluridine)	0.72	[NR] unit increase	Illumina [14760605] (imputed)	N
1589	chr9	131685014	131685015	rs55758160	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	9q34.11	PHYHD1	rs55758160-G	0.39	1E-55	(2'-O-methylcytidine)	0.302	[0.26-0.34] unit increase	Illumina [7750367] (imputed)	N
1589	chr9	131699539	131699540	rs12555901	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	9q34.11	PHYHD1	rs12555901-T	0.39	3E-37	(2'-O-methyluridine)	0.626	[0.53-0.72] unit increase	Illumina [7750367] (imputed)	N
1589	chr9	131700947	131700948	rs17507852	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	9q34.11	PHYHD1	rs17507852-C	0.945615	2E-38	(2'-O-methyluridine)	0.692	[0.59-0.8] unit decrease	Illumina [13039987] (imputed)	N
1590	chr9	131795360	131795361	rs7042889	28044437	McDonald MN	2017-01-02	J Cachexia Sarcopenia Muscle	Body mass index change in gastrointestinal cancer and chronic obstructive pulmonary disease is associated with Dedicator of Cytokinesis 1.	Body mass index (change over time) in lung cancer or chronic obstructive pulmonary disease	112 lung cancer cases, 237 COPD cases	NA	9q34.11	FAM73B	rs7042889-?		1E-7		0.136	[0.087-0.185] unit decrease	Affymetrix [418365]	N
1590	chr9	131838820	131838821	rs4295766	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	9q34.11		rs4295766-C	NR	7E-9		0.0121	[0.008-0.0162] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
1590	chr9	131840855	131840856	rs12346996	33568662	Dashti HS	2021-02-10	Nat Commun	Genetic determinants of daytime napping and effects on cardiometabolic health.	Daytime nap	452,633 European ancestry individuals	541,333 European ancestry individuals	9q34.11	DOLPP1, FAM73B	rs12346996-T		4E-12		0.0068	[0.0048-0.0088] unit increase	Affymetrix [13304133] (imputed)	N
1590	chr9	131841886	131841887	rs10819461	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	9q34.11	DOLPP1	rs10819461-T	0.718034	8E-11		0.015995407	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1590	chr9	131841886	131841887	rs10819461	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q34.11	NR	rs10819461-T	0.732087	2E-13				Affymetrix, Illumina [24653286] (imputed)	N
1590	chr9	131841886	131841887	rs10819461	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	9q34.11	NR	rs10819461-T	0.720732	1E-13		0.015514	[0.011-0.02] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
1590	chr9	131853623	131853624	rs17459044	26545240	Giri A	2015-11-06	PLoS One	Genetic Determinants of Pelvic Organ Prolapse among African American and Hispanic Women in the Women's Health Initiative.	Pelvic organ prolapse (moderate/severe)	154 African American cases, 948 African American controls, 163 Hispanic cases, 305 Hispanic controls	NA	9q34.11	DOLPP1, CRAT	rs17459044-C	0.62	2E-6		1.6129031		Affymetrix [at least 730985] (imputed)	N
1591	chr9	131863078	131863079	rs7866897	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	9q34.11		rs7866897-C	NR	3E-8		0.0119	[0.0076-0.0162] unit decrease	Affymetrix, Illumina [20535842] (imputed)	N
1591	chr9	131863078	131863079	rs7866897	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	9q34.11	CRAT	rs7866897-C	0.727044	3E-9		0.014663232	[0.0098-0.0195] unit increase	Affymetrix [93095623] (imputed)	N
1591	chr9	131863078	131863079	rs7866897	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q34.11	NR	rs7866897-C	0.697925	1E-10				Affymetrix, Illumina [24332387] (imputed)	N
1591	chr9	131863078	131863079	rs7866897	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	9q34.11	NR	rs7866897-C	0.726145	4E-12		0.01456	[0.01-0.019] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
1591	chr9	131863078	131863079	rs7866897	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	9q34.11		rs7866897-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1591	chr9	131865026	131865027	rs746872	26401656	Burkhardt R	2015-09-24	PLoS Genet	Integration of Genome-Wide SNP Data and Gene-Expression Profiles Reveals Six Novel Loci and Regulatory Mechanisms for Amino Acids and Acylcarnitines in Whole Blood.	Blood metabolite levels	2,107 European ancestry individuals	923 Sorbian (founder/genetic isolate) individuals	9q34.11	PPP2R4, SH3GLB2, CRAT, HS.148844, ENDOG, CCBL1, TBC1D13, DOLPP1	rs746872-?	NR	4E-83	(Methylmalonylcarnitine)	0.098391175	[0.089-0.108] unit decrease	Affymetrix [2619023] (imputed)	N
1591	chr9	131865026	131865027	rs746872	26401656	Burkhardt R	2015-09-24	PLoS Genet	Integration of Genome-Wide SNP Data and Gene-Expression Profiles Reveals Six Novel Loci and Regulatory Mechanisms for Amino Acids and Acylcarnitines in Whole Blood.	Blood metabolite levels	2,107 European ancestry individuals	923 Sorbian (founder/genetic isolate) individuals	9q34.11	PPP2R4, SH3GLB2, CRAT, HS.148844, ENDOG, CCBL1, TBC1D13, DOLPP1	rs746872-?	NR	3E-43	(Methylmalonylcarnitine / Propionylcarnitine)	0.058385644	[0.05-0.066] unit decrease	Affymetrix [2619023] (imputed)	N
1591	chr9	131865026	131865027	rs746872	26401656	Burkhardt R	2015-09-24	PLoS Genet	Integration of Genome-Wide SNP Data and Gene-Expression Profiles Reveals Six Novel Loci and Regulatory Mechanisms for Amino Acids and Acylcarnitines in Whole Blood.	Blood metabolite levels	2,107 European ancestry individuals	923 Sorbian (founder/genetic isolate) individuals	9q34.11	PPP2R4, SH3GLB2, CRAT, HS.148844, ENDOG, CCBL1, TBC1D13, DOLPP1	rs746872-?	NR	2E-12	(2-Hydroxyisovalerylcarnitine)	0.029235113	[0.021-0.037] unit decrease	Affymetrix [2619023] (imputed)	N
1591	chr9	131865026	131865027	rs746872	26401656	Burkhardt R	2015-09-24	PLoS Genet	Integration of Genome-Wide SNP Data and Gene-Expression Profiles Reveals Six Novel Loci and Regulatory Mechanisms for Amino Acids and Acylcarnitines in Whole Blood.	Blood metabolite levels	2,107 European ancestry individuals	923 Sorbian (founder/genetic isolate) individuals	9q34.11	PPP2R4, SH3GLB2, CRAT, HS.148844, ENDOG, CCBL1, TBC1D13, DOLPP1	rs746872-?	NR	1E-9	(2-Hydroxyisovalerylcarnitine / Leucine|Isoleucine)	2.7029938E-4	[0.00018-0.00036] unit decrease	Affymetrix [2619023] (imputed)	N
1591	chr9	131867129	131867130	rs10988207	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	9q34.11	CRAT	rs10988207-A	NR	4E-20		0.0384754	[0.03-0.047] unit increase	Affymetrix [16832071] (imputed)	N
1591	chr9	131867129	131867130	rs10988207	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	9q34.11	CRAT	rs10988207-A	0.6827	4E-22		0.03706208	[0.03-0.045] unit increase	Affymetrix [~ 2500000] (imputed)	N
1591	chr9	131872847	131872853	rs11278777	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	9q34.11	CRAT	rs11278777-GCGCCGC	0.607674	2E-19	(succinylcarnitine (C4-DC))	0.203	[0.16-0.25] unit increase	Illumina [13039987] (imputed)	N
1591	chr9	131874640	131874641	rs7849270	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	9q34.11	IER5L	rs7849270-A		1E-9		0.014	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
1591	chr9	131874640	131874641	rs7849270	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	9q34.11	PPP2R4	rs7849270-A	0.28	6E-30	(2-methylmalonylcarnitine (C4-DC))	0.158	[0.13-0.19] unit decrease	Illumina [7750367] (imputed)	N
1591	chr9	131874640	131874641	rs7849270	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite ratios	Up to 5,591 European ancestry individuals	Up to 1,767 European ancestry individuals	9q34.11	CRAT	rs7849270-A	0.3	3E-21	(C-glycosyltryptophan/succinylcarnitine)	0.025	[0.019-0.031] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
1591	chr9	131880330	131880331	rs36010420	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	9q34.11		rs36010420-C	NR	2E-16		0.0208	[0.016-0.026] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
1591	chr9	131888115	131888116	rs10988217	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	9q34.11		rs10988217-G	NR	3E-9		0.0101	[0.0068-0.0134] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
1591	chr9	131888115	131888116	rs10988217	30266950	Miyagawa T	2018-09-28	J Hum Genet	A variant at 9q34.11 is associated with HLA-DQB1*06:02 negative essential hypersomnia.	Hypersomnia (HLA-DQB1*06:02 negative)	119 Japanese ancestry cases, 1,582 Japanese ancestry controls	283 Japanese ancestry cases, 433 Japanese ancestry controls	9q34.11	CRAT, PPP2R4	rs10988217-G	0.244	8E-9		2.63	[1.88-3.69]	Affymetrix [476572]	N
1591	chr9	131888115	131888116	rs10988217	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	9q34.11	CRAT	rs10988217-A	0.39	1E-18	(succinylcarnitine)	0.016	[0.012-0.02] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
1591	chr9	131888115	131888116	rs10988217	23646285	Khor SS	2013-04-16	PeerJ	Genome-wide association study of HLA-DQB1*06:02 negative essential hypersomnia.	Hypersomnia (HLA-DQB1*06:02 negative)	125 Japanese ancestry cases, 562 Japanese ancestry controls		9q34.11	CART, PPP2R4	rs10988217-G	0.233	3E-6	(recessive)	3.85	[2.11-7.04]	Affymetrix [508366] (imputed)	N
1591	chr9	131889293	131889294	rs17481720	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	9q34.11	NR	rs17481720-?	NR	4E-7	(AA)	1.2771	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1591	chr9	131891151	131891152	rs7023900	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q34.11	NR	rs7023900-C	0.304149	3E-77				Affymetrix, Illumina [22063850] (imputed)	N
1591	chr9	131891151	131891152	rs7023900	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite modules (eigenmetabolites) in chronic kidney disease	1,221 cases	406 cases	9q34.11	PPP2R4	rs7023900-C	0.28	2E-14	(2-methylmalonylcarnitine(C4-DC), succinylcarnitine(C4-DC), X-24699)	0.007	[0.005-0.009] unit decrease	Illumina [7750367] (imputed)	N
1591	chr9	131891151	131891152	rs7023900	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	9q34.11		rs7023900-?	NR	4E-70				NR [~ 8900000] (imputed)	N
1591	chr9	131904607	131904608	rs3124514	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	9q34.11	NR	rs3124514-C	0.697492	9E-79		0.038768	[0.035-0.043] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
1591	chr9	131905853	131905854	rs3118634	35079123	Chambers T	2022-01-25	Mol Psychiatry	Genetic common variants associated with cerebellar volume and their overlap with mental disorders: a study on 33,265 individuals from the UK-Biobank.	Total cerebellar volume (excluding Crus I vermis)	33,265 European ancestry individuals	NA	9q34.11		rs3118634-A	NR	2E-10		0.0348	[0.024-0.046] unit decrease	Affymetrix [6193476] (imputed)	N
1591	chr9	131910012	131910013	rs11789753	26401656	Burkhardt R	2015-09-24	PLoS Genet	Integration of Genome-Wide SNP Data and Gene-Expression Profiles Reveals Six Novel Loci and Regulatory Mechanisms for Amino Acids and Acylcarnitines in Whole Blood.	Blood metabolite levels	2,107 European ancestry individuals	923 Sorbian (founder/genetic isolate) individuals	9q34.11	PPP2R4, SH3GLB2, CRAT, HS.148844, ENDOG, CCBL1, TBC1D13, DOLPP1	rs11789753-?	NR	5E-12	(Methylmalonylcarnitine)	0.12708883	[0.091-0.163] unit decrease	Affymetrix [2619023] (imputed)	N
1591	chr9	131920986	131920986	rs35467189	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	9q34.11		rs35467189-CT	0.69419	8E-63		0.040526237	[0.036-0.045] unit increase	Affymetrix [93095623] (imputed)	N
1591	chr9	131923948	131923949	rs4837345	29942513	Penney ME	2018-06-13	Biomark Res	Associations of single nucleotide polymorphisms with mucinous colorectal cancer: genome-wide common variant and gene-based rare variant analyses.	Mucinous adenocarcinoma in colorectal cancer	57 European ancestry cases, 448 European ancestry controls	NA	9q34.11	Intergenic	rs4837345-T		4E-6	(univariable, recessive)	4.72	[2.40-9.05]	Illumina [729373]	N
1591	chr9	131927091	131927092	rs6478868	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Meat-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	9q34.11	FAM73B, DOLPP1, CRAT, PPP2R4, IER5L	rs6478868-?	NR	6E-11		0.0171298	[0.012-0.022] unit increase	Affymetrix [25921788] (imputed)	N
1591	chr9	131930493	131930494	rs10819474	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	9q34.11	RP11-247A12.7	rs10819474-C	0.314875	2E-12		0.017003365	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1591	chr9	131930493	131930494	rs10819474	29942513	Penney ME	2018-06-13	Biomark Res	Associations of single nucleotide polymorphisms with mucinous colorectal cancer: genome-wide common variant and gene-based rare variant analyses.	Mucinous adenocarcinoma in colorectal cancer	57 European ancestry cases, 448 European ancestry controls	NA	9q34.11	Intergenic	rs10819474-C		4E-6	(univariable, recessive)	4.72	[2.40-9.05]	Illumina [729373]	N
1591	chr9	131938912	131938913	rs1075650	29942513	Penney ME	2018-06-13	Biomark Res	Associations of single nucleotide polymorphisms with mucinous colorectal cancer: genome-wide common variant and gene-based rare variant analyses.	Mucinous adenocarcinoma in colorectal cancer	57 European ancestry cases, 448 European ancestry controls	NA	9q34.11	NR	rs1075650-G	NR	4E-6	(univariable, recessive)	4.721	[2.403-9.052]	Illumina [729373]	N
1591	chr9	131940018	131940019	rs184457	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	9q34.11	IER5L	rs184457-A	0.3019	1E-9		0.1659	[0.11-0.22] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1591	chr9	131940707	131940708	rs56784286	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	9q34.11		rs56784286-T	NR	2E-10		0.0186	[0.013-0.024] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1591	chr9	131940707	131940708	rs56784286	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	9q34.11		rs56784286-T	0.315911	3E-10		0.0186363	[0.013-0.024] unit decrease	Illumina [13479924] (imputed)	N
1591	chr9	131942572	131942573	rs2005079	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	9q34.11	NR	rs2005079-G	0.332633	5E-8		0.0179251	[0.011-0.024] unit decrease	NR [19129689] (imputed)	N
1591	chr9	131942572	131942573	rs2005079	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	9q34.11	NR	rs2005079-?	NR	1E-7		5.311	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1591	chr9	131942675	131942676	rs2005078	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	9q34.11	NR	rs2005078-G	0.296223	3E-10		0.04330212	[0.03-0.057] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1591	chr9	131942675	131942676	rs2005078	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	9q34.11	Intergenic	rs2005078-A	0.6674	2E-10		0.0192	[0.013-0.025] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
1591	chr9	131943439	131943440	rs10988239	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	9q34.11	IER5L, C9orf106	rs10988239-C	0.48829999999999996	3E-11		1.0215285		Affymetrix [11880941] (imputed)	N
1591	chr9	131943842	131943843	rs967497	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	9q34.11	IER5L	rs967497-A	0.3102	3E-9		0.015	[0.01-0.02] unit increase	Affymetrix [19819130] (imputed)	N
1591	chr9	131944137	131944138	rs913264	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	9q34.11	NR	rs913264-T	NR	7E-11		6.519	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1591	chr9	131953597	131953598	rs10760593	26401656	Burkhardt R	2015-09-24	PLoS Genet	Integration of Genome-Wide SNP Data and Gene-Expression Profiles Reveals Six Novel Loci and Regulatory Mechanisms for Amino Acids and Acylcarnitines in Whole Blood.	Blood metabolite levels	2,107 European ancestry individuals	923 Sorbian (founder/genetic isolate) individuals	9q34.11	PPP2R4, SH3GLB2, CRAT, HS.148844, ENDOG, CCBL1, TBC1D13, DOLPP1	rs10760593-?	NR	2E-22	(Methylmalonylcarnitine)	0.059344266	[0.048-0.071] unit decrease	Affymetrix [2619023] (imputed)	N
1591	chr9	131956151	131956152	rs7872329	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	9q34.11	NR	rs7872329-A	0.688974	4E-8		0.0174383	[0.011-0.024] unit increase	Affymetrix [16577424] (imputed)	N
1591	chr9	131959614	131959615	rs28365587	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	9q34.11		rs28365587-A	0.5141	4E-9		0.013	[0.0091-0.0169] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
1591	chr9	131964819	131964820	rs13289026	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	9q34.11		rs13289026-?	NR	5E-10				NR [~ 8900000] (imputed)	N
1591	chr9	131968533	131968534	rs12686182	26401656	Burkhardt R	2015-09-24	PLoS Genet	Integration of Genome-Wide SNP Data and Gene-Expression Profiles Reveals Six Novel Loci and Regulatory Mechanisms for Amino Acids and Acylcarnitines in Whole Blood.	Blood metabolite levels	2,107 European ancestry individuals	923 Sorbian (founder/genetic isolate) individuals	9q34.11	PPP2R4, SH3GLB2, CRAT, HS.148844, ENDOG, CCBL1, TBC1D13, DOLPP1	rs12686182-?	NR	2E-20	(Methylmalonylcarnitine)	0.043668013	[0.034-0.053] unit increase	Affymetrix [2619023] (imputed)	N
1592	chr9	131998295	131998296	rs11790192	29860282	Scelsi MA	2018-05-30	Brain	Genetic study of multimodal imaging Alzheimer's disease progression score implicates novel loci.	Cortical amyloid beta load	936 European ancestry individuals	NA	9q34.11	Intergenic	rs11790192-?		7E-6	(corrected for APOE4 status)	0.12	[NR] unit decrease	Illumina [5137218] (imputed)	N
1592	chr9	132059863	132059864	rs7389069	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 1 levels	252 European ancestry individuals	NA	9q34.11		rs7389069-C	NR	8E-6		6.0482	[3.45-8.65] unit increase	Illumina [NR] (imputed)	N
1592	chr9	132108246	132108247	rs17441316	32439431	Simard M	2020-05-19	J Allergy Clin Immunol	Polygenic risk score for atopic dermatitis in the Canadian population.	Atopic dermatitis (moderate to severe)	222 South East Asian ancestry, East Asian ancestry, South Asian ancestry, African American or Afro-Caribbean, European ancestry, Greater Middle Eastern (Middle Eastern, North African or Persian) cases, 2,466 Greater Middle Eastern (Middle Eastern, North African or Persian), Hispanic or Latin American, NR moderate to severe atopic dermatitis cases, 2,466 South East Asian ancestry, East Asian ancestry, South Asian ancestry, African American or Afro-Caribbean, European ancestry, Greater Middle Eastern (Middle Eastern, North African or Persian) cases, 2,466 Greater Middle Eastern (Middle Eastern, North African or Persian), Hispanic or Latin American, NR controls without moderate to severe atopic dermatitis	NA	9q34.11		rs17441316-T	NR	6E-10	(general)			Illumina [5894709] (imputed)	N
1592	chr9	132113930	132113931	rs73621547	28927378	Qian DC	2017-09-19	BMC Genomics	Genome-wide imaging association study implicates functional activity and glial homeostasis of the caudate in smoking addiction.	Caudate activity during reward	106 individuals	NA	9q34.11	NR	rs73621547-C	0.0991553	3E-6		1.100957	[0.67-1.53] unit increase	Illumina [at least 621854] (imputed)	N
1592	chr9	132115841	132115842	rs7021731	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9q34.11	NR	rs7021731-T	0.01568	3E-9	(RAC2)	0.01571	NR unit increase	Illumina [1671387] (imputed)	N
1592	chr9	132115841	132115842	rs7021731	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9q34.11	NR	rs7021731-T	0.01568	3E-9	(COTL1)	0.1402	NR unit increase	Illumina [1671387] (imputed)	N
1592	chr9	132115841	132115842	rs7021731	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9q34.11	NR	rs7021731-T	0.01568	2E-8	(LCP1)	0.8256	NR unit increase	Illumina [1671387] (imputed)	N
1592	chr9	132115841	132115842	rs7021731	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9q34.11	NR	rs7021731-T	0.01568	1E-9	(PYCARD)	0.02659	NR unit increase	Illumina [1671387] (imputed)	N
1593	chr9	132122533	132122534	rs143335155	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	9q34.11	intergenic	rs143335155-T	0.0148469005524204	4E-7	(C_Gammaproteobacteria_HB)	1.69458	[1.04-2.35] unit decrease	Illumina [7711310] (imputed)	N
1593	chr9	132123953	132123954	rs77526807	32562552	Chua KC	2020-06-20	Clin Pharmacol Ther	Genome-Wide Meta-Analysis Validates a Roless for S1PR1 in Microtubule Targeting Agent-Induced Sensory Peripheral Neuropathy.	Sensory peripheral neuropathy in microtubule targeting agent-treated breast cancer	1,324 European ancestry individuals	NA	9q34.11	C9orf106	rs77526807-?		2E-6		0.818	[NR] unit increase	Illumina [6030476] (imputed)	N
1593	chr9	132183852	132183853	rs28361713	33075057	Li X	2020-10-19	PLoS Genet	Automated feature extraction from population wearable device data identified novel loci associated with sleep and circadian rhythms.	Sleep end time	90,515 individuals	NA	9q34.11	LINC00963	rs28361713-A	NR	3E-8		0.508	[0.33-0.69] unit decrease	NR [11024754] (imputed)	N
1593	chr9	132194032	132194033	rs118142265	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental longevity (mother's age at death)	52,776 middle-aged British individuals	NA	9q34.11	NR	rs118142265-?	NR	9E-7		0.11033	[0.066-0.154] unit decrease	Affymetrix [9658292] (imputed)	N
1593	chr9	132233813	132233814	rs1147367	32321835	Alic L	2020-04-22	Proc Natl Acad Sci U S A	A genome-wide association study identifies key modulators of complement factor H binding to malondialdehyde-epitopes.	Complement factor H binding to malondialdehyde	934 European ancestry individuals	NA	9q34.11	NR	rs1147367-?		7E-6				Illumina [4278941] (imputed)	N
1594	chr9	132257782	132257783	rs1220789	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9q34.11		rs1220789-?	NR	5E-12				NR [~ 8900000] (imputed)	N
1594	chr9	132339069	132339070	rs10988428	23934736	Yu B	2013-08-11	Genet Epidemiol	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels (Pyroglutamine)	1,260 African American individuals	NA	9q34.11	C9orf50	rs10988428-G		8E-6		0.12	[0.07-0.17] unit increase	Affymetrix [~ 2500000] (imputed)	N
1594	chr9	132349596	132349597	rs73628692	23319000	Luykx JJ	2013-01-15	Mol Psychiatry	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA/5-HIAA ratio)	up to 398 European ancestry individuals	NA	9q34.11	BC037833	rs73628692-T		7E-6		0.2144	unit increase	Illumina [5767231] (imputed)	N
1594	chr9	132370359	132370360	rs10988449	22041458	Clark SL	2011-11-01	Psychol Med	Pharmacogenomic study of side-effects for antidepressant treatment options in STAR*D.	Response to anti-depressant treatment in major depressive disorder	1,151 European ancestry cases, 288 African American cases	NA	9q34.11	C9orf50	rs10988449-T	0.17	3E-6	(Citalopram+Buspirone, Dizziness)			Affymetrix [421789]	N
1595	chr9	132444098	132444099	rs7866070	20585627	Eriksson N	2010-06-24	PLoS Genet	Web-based, participant-driven studies yield novel genetic associations for common traits.	Common traits (Other)	9,126 European ancestry individuals	NA	9q34.11	NR	rs7866070-?	NR	7E-7	(astigmatism)			Illumina [535076]	N
1595	chr9	132465303	132465304	rs3861882	26491034	Sarzynski MA	2015-10-21	Br J Sports Med	Genomic and transcriptomic predictors of triglyceride response to regular exercise.	Response to exercise (triglyceride level interaction)	478 European ancestry individuals from 99 families	NA	9q34.11	PRRX2	rs3861882-A	0.72	7E-6		0.38	[NR] unit decrease	Illumina [2396589] (imputed)	N
1595	chr9	132502800	132502801	rs11788591	27611488	Almoguera B	2016-09-09	Am J Respir Crit Care Med	Identification of Four Novel Loci in Asthma in European American and African American Populations.	Asthma	819 African American non-allergic asthma cases, 2,218 African American allergic asthma cases 4,360 African American controls, 808 European American non-allergic asthma cases, 1,464 European American allergic asthma cases, 11,975 European American controls	NA	9q34.11	PTGES	rs11788591-?		4E-8	(AA)			Affymetrix, Illumina [NR] (imputed)	N
1595	chr9	132505658	132505659	rs4837404	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	9q34.11	PTGES	rs4837404-G	0.368	5E-6		0.064	[0.037-0.091] unit increase	Affymetrix, Illumina [7374092] (imputed)	N
1596	chr9	132515080	132515081	rs2241271	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Pars orbitalis volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	9q34.11	PTGES	rs2241271-?		2E-6				Illumina [4322238] (imputed)	N
1596	chr9	132554723	132554724	rs76044292	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	9q34.11	NR	rs76044292-?	NR	8E-6		0.1273	[0.071-0.184] unit decrease	Illumina [at least 560000] (imputed)	N
1596	chr9	132566665	132566666	rs7029757	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Percent liver fat	32,858 European ancestry individuals	NA	9q34.11	TOR1B	rs7029757-?	NR	5E-9		0.0766	NR % decrease	Affymetrix [9390170] (imputed)	N
1596	chr9	132566665	132566666	rs7029757	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	9q34.11	TOR1B	rs7029757-G	0.9053	1E-15		0.00541139	[0.0041-0.0067] unit increase	Affymetrix [13995440] (imputed)	N
1596	chr9	132566665	132566666	rs7029757	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	9q34.11	TOR1B	rs7029757-G	0.9	2E-8		5.6	z-score increase	Affymetrix [4312306] (imputed)	N
1596	chr9	132566665	132566666	rs7029757	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	9q34.11	NR	rs7029757-A	NR	8E-11		0.0268	[0.019-0.035] unit decrease	Affymetrix [9000000] (imputed)	N
1596	chr9	132573535	132573536	rs12634	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	9q34.11	NR	rs12634-T	NR	4E-14		1.058	[1.04-1.07]	Affymetrix, Illumina [29235255] (imputed)	N
1596	chr9	132576059	132576060	rs1182	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer (early onset)	6,988 European ancestry cases, 44,256 European ancestry controls	NA	9q34.11	TOR1A	rs1182-A	NR	1E-7		1.13	[NR]	Illumina [20370935] (imputed)	N
1596	chr9	132576059	132576060	rs1182	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer (advanced)	15,167 European ancestry cases, 58,308 European ancestry controls	NA	9q34.11	TOR1A	rs1182-A	NR	1E-7		1.09	[NR]	Illumina [20370935] (imputed)	N
1596	chr9	132576059	132576060	rs1182	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	9q34.11	TOR1A	rs1182-A	0.22	1E-9		1.06	[1.04-1.08]	Illumina [20370935] (imputed)	N
1596	chr9	132585057	132585058	rs2296793	32314116	Zhang H	2020-04-20	Osteoporos Int	Pleiotropic loci underlying bone mineral density and bone size identified by a bivariate genome-wide association analysis.	Hip bone size	3,267 European ancestry individuals, 1,619 Chinese ancestry individuals, 843 African American individuals, 446 Hispanic individuals	NA	9q34.11	NR	rs2296793-G	NR	9E-8		0.09	[0.051-0.129] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1596	chr9	132585057	132585058	rs2296793	32314116	Zhang H	2020-04-20	Osteoporos Int	Pleiotropic loci underlying bone mineral density and bone size identified by a bivariate genome-wide association analysis.	Bone mineral density (hip) and hip bone size	3,267 European ancestry individuals, 1,619 Chinese ancestry individuals, 843 African American individuals, 446 Hispanic individuals	NA	9q34.11	NR	rs2296793-G	NR	1E-8				Affymetrix, Illumina [NR] (imputed)	N
1596	chr9	132622626	132622627	rs114574340	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9q34.11	NR	rs114574340-A	0.01394	2E-8	(ACO1)	0.8042	NR unit increase	Illumina [1671387] (imputed)	N
1596	chr9	132629884	132629885	rs62583579	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	9q34.11		rs62583579-T	NR	1E-8		0.018	[0.012-0.024] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
1597	chr9	132653054	132653055	rs72757229	32235003	Arbeev KG	2020-04-01	Aging (Albany NY)	Genetics of physiological dysregulation: findings from the long life family study using joint models.	Physiological dysregulation (Mahalanobis distance)	4,608 European ancestry individuals	NA	9q34.11	FNBP1	rs72757229-?	NR	9E-7				Illumina [1464300]	N
1597	chr9	132657263	132657264	rs10988542	26301688	Li YR	2015-08-24	Nat Med	Meta-analysis of shared genetic architecture across ten pediatric autoimmune diseases.	Pediatric autoimmune diseases	97 European ancestry thyroiditis cases, 107 European ancestry ankylosing spondylitis cases, 100 European ancestry psoriasis cases, 173 European ancestry celiac disease cases, 254 European ancestry systemic lupus erythematosus cases, 308 European ancestry common variable inmunodeficiency cases, 865 European ancestry ulcerative colitis cases, 1,086 European ancestry Type 1 diabetes cases, 1,123  European ancestry juvenile idiopathic arthritis cases, 1,922  European ancestry Crohn's disease cases, 10,718 European ancestry controls	NA	9q34.11	FNBP1	rs10988542-C	0.08	7E-7				Illumina [7347414] (imputed)	N
1597	chr9	132681783	132681784	rs2295952	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (unassigned genus belonging to family Clostridiales)	1,068 Japanese ancestry individuals	NA	9q34.11	FNBP1	rs2295952-T	0.14	2E-6	(male)	0.0998	[0.059-0.141] unit decrease	Illumina [6380737] (imputed)	N
1597	chr9	132684006	132684007	rs2007126	26112879	Rudkowska I	2015-06-20	J Nutrigenet Nutrigenomics	Interaction between Common Genetic Variants and Total Fat Intake on Low-Density Lipoprotein Peak Particle Diameter: A Genome-Wide Association Study.	LDL peak particle diameter (total fat intake interaction)	541 European ancestry individuals	NA	9q34.11	intergenic	rs2007126-A	0.839465741	2E-7		0.051945508	[0.032-0.071] unit decrease	Illumina [1632371] (imputed)	N
1597	chr9	132700591	132700592	rs139762218	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Diastolic blood pressure change trajectory	5,304 African American individuals, 13,137 European ancestry individuals, 1,317 Hispanic individuals, 1,439 admixed individuals, 703 Chinese ancestry individuals	6,500 African American individuals, 2,451 European ancestry individuals, 2,869 Hispanic individuals	9q34.11	NR	rs139762218-T	0.0127	4E-7		1.269	[0.78-1.76] mmHg increase	Affymetrix, Illumina [NR] (imputed)	N
1597	chr9	132714967	132714968	rs10760649	26112879	Rudkowska I	2015-06-20	J Nutrigenet Nutrigenomics	Interaction between Common Genetic Variants and Total Fat Intake on Low-Density Lipoprotein Peak Particle Diameter: A Genome-Wide Association Study.	LDL peak particle diameter (total fat intake interaction)	541 European ancestry individuals	NA	9q34.11	FNBP1	rs10760649-T	0.84	3E-7		0.05	[0.03-0.07] unit decrease	Illumina [1632371] (imputed)	N
1597	chr9	132729283	132729284	rs11789432	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	9q34.11	USP20	rs11789432-?	NR	7E-6	(TAG 50:2)	0.48159927	[0.27-0.69] unit increase	Affymetrix [at least 2500000] (imputed)	N
1597	chr9	132752178	132752179	rs76075379	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		FNBP1	rs76075379-?	NR	1E-10	(female)	2.76184	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1598	chr9	132784774	132784775	rs117483095	28090653	Liu Y	2017-01-16	Clin Pharmacol Ther	Genome-Wide Study Links PNPLA3 Variant With Elevated Hepatic Transaminase After Acute Lymphoblastic Leukemia Therapy.	Alanine aminotransferase (ALT) levels after remission induction therapy in actute lymphoblastic leukemia (ALL)	up to 488 European ancestry cases, up to 111 African American cases, up to 60 Hispanic cases, up to 56 other ancestry cases	NA	9q34.11	FNBP1	rs117483095-T		4E-6		1.62	[1.05-2.50]	Affymetrix, Illumina [NR] (imputed)	N
1598	chr9	132819255	132819256	rs113205261	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9q34.11	NR	rs113205261-T	0.01568	1E-8	(ACSM2B)	1.287	NR unit increase	Illumina [1671387] (imputed)	N
1598	chr9	132845627	132845628	rs55948650	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		GPR107	rs55948650-?	NR	2E-11	(female)	2.75618	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1598	chr9	132872072	132872073	rs111558599	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9q34.11	NR	rs111558599-A	0.01394	2E-10	(ACSM2B)	1.518	NR unit increase	Illumina [1671387] (imputed)	N
1599	chr9	132939791	132939792	rs4836694	23535033	Sherva R	2013-03-24	Alzheimers Dement	Genome-wide association study of the rate of cognitive decline in Alzheimer's disease.	Alzheimer's disease (cognitive decline)	303 European ancestry cases		9q34.11	NCS1	rs4836694-?	0.11	7E-7		0.21	unit decrease	Illumina [NR] (imputed)	N
1599	chr9	132945265	132945266	rs78795763	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	9q34.11	NA	rs78795763-G		4E-10		0.0226682	[0.016-0.03] unit increase	Illumina [13288253] (imputed)	N
1599	chr9	132946614	132946615	rs10819610	30713548	Schurz H	2019-01-18	Front Genet	A Sex-Stratified Genome-Wide Association Study of Tuberculosis Using a Multi-Ethnic Genotyping Array.	Tuberculosis	242 South African admixed female cases, 168 South African admixed male cases, 223 South African admixed female controls, 182 South African admixed male controls	NA	9q34.11	NCS1	rs10819610-?	NR	2E-6	(Female)	1.9455254		Illumina [848325]	N
1599	chr9	132957522	132957523	rs758850	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	9q34.11	NR	rs758850-A	0.226	4E-6	(IFNalpha_ABC_of_CD56dimCD16p)			Illumina [5084123] (imputed)	N
1599	chr9	133026249	133026250	rs7029396	29622589	Tereshchenko LG	2018-04-05	J Am Heart Assoc	Genome-Wide Associations of Global Electrical Heterogeneity ECG Phenotype: The ARIC (Atherosclerosis Risk in Communities) Study and CHS (Cardiovascular Health Study).	Global electrical heterogeneity phenotypes	3,057 Black individuals, 10,769 European ancestry individuals	NA	9q34.11	HMCN2	rs7029396-C	0.78	2E-9	(SVG magnitude)	0.09	[0.061-0.119] unit decrease	Affymetrix, Illumina [at least 9117794] (imputed)	N
1599	chr9	133026249	133026250	rs7029396	29622589	Tereshchenko LG	2018-04-05	J Am Heart Assoc	Genome-Wide Associations of Global Electrical Heterogeneity ECG Phenotype: The ARIC (Atherosclerosis Risk in Communities) Study and CHS (Cardiovascular Health Study).	Global electrical heterogeneity phenotypes	3,057 Black individuals, 10,769 European ancestry individuals	NA	9q34.11	HMCN2	rs7029396-C	0.78	2E-10	(SAI QRST)	0.09	[0.063-0.117] unit decrease	Affymetrix, Illumina [at least 9117794] (imputed)	N
1600	chr9	133038720	133038721	rs9657643	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	9q34.11	HMCN2	rs9657643-A	0.27	3E-8		5.55	z-score increase	Affymetrix [4314223] (imputed)	N
1600	chr9	133069740	133069741	rs143378550	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	9q34.11		rs143378550-A	NR	7E-13		0.0571	[0.041-0.073] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
1600	chr9	133069740	133069741	rs143378550	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	9q34.11	NR	rs143378550-A	0.025375000000000036	3E-9		0.0152841	[0.0095-0.021] unit increase	Affymetrix [16582909] (imputed)	N
1600	chr9	133069740	133069741	rs143378550	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	9q34.11	NR	rs143378550-A	0.02549800000000002	4E-8		0.0190864	[0.011-0.028] unit increase	Affymetrix [16585854] (imputed)	N
1600	chr9	133069740	133069741	rs143378550	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	9q34.11	NR	rs143378550-A	0.025375000000000036	5E-9		0.0176302	[0.011-0.024] unit increase	Affymetrix [16582965] (imputed)	N
1600	chr9	133069740	133069741	rs143378550	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	9q34.11	NR	rs143378550-A	0.02549800000000002	6E-7		0.0201519	[0.01-0.03] unit increase	Affymetrix [16585866] (imputed)	N
1601	chr9	133260338	133260339	rs763936875	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Esophagitis, GERD and related diseases (PheCode 530.1)	6,591 European ancestry cases, 449,757 European ancestry controls	NA	9q34.11		rs763936875-A	0.001029	2E-9		1.88	[1.26-2.5] unit increase	NR [11842647] (imputed)	N
1601	chr9	133285968	133285969	rs112661203	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Melanoma	3,122 White British ancestry cases, 271,708 White British ancestry controls	NA	9q34.11		rs112661203-?	NR	4E-6		3.04347	[2.57-3.52]	NR [674885]	N
1601	chr9	133294243	133294244	rs13294886	27894865	Gago-Diaz M	2016-11-25	J Mol Cell Cardiol	The genetic component of bicuspid aortic valve and aortic dilation. An exome-wide association study.	Bicuspid aortic valve without aortic dilation	565 European ancestry cases, 484 European ancestry controls	895 European ancestry cases, 1,493 European ancestry controls	9q34.11	HMCN2	rs13294886-G	0.51	2E-6	(dominant model)	2.7	[2.29-3.11]	Illumina [up to 82000000] (imputed)	N
1602	chr9	133364642	133364643	rs45599031	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		ASS1	rs45599031-?	NR	9E-10	(male)	1.29412	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1602	chr9	133426080	133426081	rs10120794	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	9q34.11	NR	rs10120794-A	0.3776	4E-9		0.0345	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
1602	chr9	133427054	133427055	rs150755365	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	9q34.11	NR	rs150755365-A	0.0	9E-6		2.18	[1.83-2.53]	Illumina [8468885] (imputed)	N
1603	chr9	133441613	133441613	rs537120594	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	9q34.11		rs537120594-?	NR	1E-47		0.0300045	[0.026-0.034] unit increase	Affymetrix [20259828] (imputed)	N
1603	chr9	133441613	133441613	rs537120594	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	9q34.11	LOC100272217	rs537120594-C	0.658491	1E-6	(men)	0.0271271	[0.016-0.038] unit increase	NR [17166351] (imputed)	N
1603	chr9	133441613	133441613	rs537120594	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	9q34.11	LOC100272217	rs537120594-C	0.657709	2E-18		0.0307976	[0.024-0.038] unit increase	NR [17166351] (imputed)	N
1603	chr9	133441613	133441613	rs537120594	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	9q34.11	LOC100272217	rs537120594-C	0.657026	4E-14	(women)	0.0345899	[0.025-0.044] unit increase	NR [17166351] (imputed)	N
1603	chr9	133447795	133447796	rs7847695	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	9q34.11	NR	rs7847695-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
1603	chr9	133452157	133452158	rs7040344	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	9q34.11	LOC100272217	rs7040344-C	0.649713	9E-45		0.0273961	[0.024-0.031] unit increase	NR [13737936] (imputed)	N
1603	chr9	133462639	133462640	rs10901208	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	9q34.11		rs10901208-C	NR	1E-15		0.0195	[0.015-0.024] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
1603	chr9	133462639	133462640	rs10901208	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	9q34.11	FUBP3	rs10901208-C	0.35	2E-11		6.74	z-score increase	Affymetrix [4311822] (imputed)	N
1603	chr9	133464083	133464084	rs7466269	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	9q34.11	FUBP3	rs7466269-A	0.6369	2E-7		0.0363	[0.023-0.05] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1603	chr9	133464083	133464084	rs7466269	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	9q34.11	FUBP3	rs7466269-A	0.644	1E-27		0.033	[0.027-0.039] unit increase	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
1603	chr9	133464083	133464084	rs7466269	24945404	Kemp JP	2014-06-19	PLoS Genet	Phenotypic dissection of bone mineral density reveals skeletal site specificity and facilitates the identification of novel loci in the genetic regulation of bone mass attainment.	Bone mineral density (paediatric, total body less head)	8,007 European ancestry children, 289 Surinamese ancestry children, 300 Turkish ancestry children, 232 Moroccan ancestry children, 588 children	NA	9q34.11	FUBP3	rs7466269-A	0.65	3E-8		0.084	[0.055-0.113] unit increase	Illumina [~ 2500000] (imputed)	N
1603	chr9	133464083	133464084	rs7466269	24945404	Kemp JP	2014-06-19	PLoS Genet	Phenotypic dissection of bone mineral density reveals skeletal site specificity and facilitates the identification of novel loci in the genetic regulation of bone mass attainment.	Bone mineral density (paediatric, lower limb)	8,007 European ancestry children, 289 Surinamese ancestry children, 300 Turkish ancestry children, 232 Moroccan ancestry children, 588 children	NA	9q34.11	FUBP3	rs7466269-A	NR	5E-6	(EA)	0.0793	[0.045-0.113] unit increase	Illumina [~ 2500000] (imputed)	N
1603	chr9	133464083	133464084	rs7466269	24945404	Kemp JP	2014-06-19	PLoS Genet	Phenotypic dissection of bone mineral density reveals skeletal site specificity and facilitates the identification of novel loci in the genetic regulation of bone mass attainment.	Bone mineral density (paediatric, lower limb)	8,007 European ancestry children, 289 Surinamese ancestry children, 300 Turkish ancestry children, 232 Moroccan ancestry children, 588 children	NA	9q34.11	FUBP3	rs7466269-A	0.65	2E-8		0.087	[0.058-0.116] unit increase	Illumina [~ 2500000] (imputed)	N
1603	chr9	133464083	133464084	rs7466269	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	9q34.11	FUBP3	rs7466269-A	0.64	2E-10		1.14	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
1603	chr9	133464083	133464084	rs7466269	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	9q34.11	FUBP3	rs7466269-A	0.64	3E-17		0.032	[NR] unit increase	Affymetrix, Illumina [2834208] (imputed)	N
1603	chr9	133464083	133464084	rs7466269	18391950	Lettre G	2008-04-06	Nat Genet	Identification of ten loci associated with height highlights new biological pathways in human growth.	Height	15,821 European ancestry individuals	Up to 17,801 European ancestry individuals	9q34.11	FUBP3	rs7466269-G	0.33	8E-7		0.27	[0.38-0.69] cm decrease	Affymetrix, Illumina [2260683] (imputed)	N
1603	chr9	133469989	133469990	rs8181197	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	9q34.11		rs8181197-T	NR	1E-11		0.0147	[0.01-0.019] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
1603	chr9	133471890	133471891	rs10901216	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	9q34.11		rs10901216-A	NR	5E-64		0.0224	[0.02-0.025] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1603	chr9	133471890	133471891	rs10901216	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9q34.11		rs10901216-?	NR	4E-77				NR [~ 8900000] (imputed)	N
1603	chr9	133471890	133471891	rs10901216	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	9q34.11	NR	rs10901216-A	0.3495	6E-12	(European)	0.0453	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
1603	chr9	133471890	133471891	rs10901216	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	9q34.11	NR	rs10901216-A	0.3438	6E-15		0.0474	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
1603	chr9	133473302	133473303	rs3802342	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	9q34.11	FUBP3	rs3802342-C	0.648	1E-13		0.0147	[0.011-0.019] unit increase	Affymetrix [18391927] (imputed)	N
1603	chr9	133478826	133478827	rs7851693	30158200	Trajanoska K	2018-08-29	BMJ	Assessment of the genetic and clinical determinants of fracture risk: genome wide association and mendelian randomisation study.	Fractures	37,857 European or East Asian cases, 227,116 European or East Asian controls	147,200 European ancestry cases, 150,085 European ancestry controls	9q34.12	FUBP3	rs7851693-G	0.35	5E-19		1.04	[1.03-1.05]	Affymetrix, Illumina [2539801] (imputed)	N
1603	chr9	133478826	133478827	rs7851693	22504420	Estrada K	2012-04-15	Nat Genet	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Femoral neck bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	9q34.12	FUBP3	rs7851693-C	0.64	3E-22		0.05	[NR] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1603	chr9	133481562	133481563	rs9657746	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	9q34.12		rs9657746-?	NR	4E-41				NR [~ 8900000] (imputed)	N
1603	chr9	133481562	133481563	rs9657746	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	9q34.12		rs9657746-?	NR	1E-49		0.0306599	[0.026-0.035] unit increase	Affymetrix [20259828] (imputed)	N
1603	chr9	133481562	133481563	rs9657746	29499414	Pei YF	2018-02-27	Bone	Joint study of two genome-wide association meta-analyses identified 20p12.1 and 20q13.33 for bone mineral density.	Femoral neck bone mineral density	up to 4,692 European ancestry individuals, up to 1,539 Han Chinese ancestry individuals, up to 849 African American individuals, up to 446 Hispanic individuals, 2,882 European ancestry whole-genome sequenced individuals, 3,549 European ancestry whole-exome sequenced individuals, 26,534 European ancestry non-array genotype imputed individuals	NA	9q34.12	FUBP3	rs9657746-C	0.647884	2E-8		0.0407	[0.027-0.055] unit increase	Affymetrix, Illumina [7998108] (imputed)	N
1603	chr9	133481934	133481935	rs145920874	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Uterine fibroids (MTAG)	5,236 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	9q34.12	Intergenic	rs145920874-?		5E-6		1.05	[1.03-1.08]	Illumina [7645193] (imputed)	N
1603	chr9	133482005	133482006	rs11792294	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Anthropometric traits (multi-trait analysis)	4,988 Spanish ancestry individuals	336,107 British ancestry individuals	9q34.12	FUBP3	rs11792294-?		6E-17				Illumina [9499600] (imputed)	N
1603	chr9	133482005	133482006	rs11792294	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Anthropometric traits	4,988 Spanish ancestry individuals	336,107 British ancestry individuals	9q34.12	FUBP3	rs11792294-G	0.425	2E-29	(height)	0.02	[0.017-0.023] unit decrease	Illumina [9499600] (imputed)	N
1603	chr9	133496401	133496402	rs11794652	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	9q34.12	FUBP3	rs11794652-A	0.1616	5E-7		0.0028	[0.0018-0.0038] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
1603	chr9	133515337	133515338	rs2313526	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	9q34.12		rs2313526-C	0.325089	4E-25		0.0229218	[0.019-0.027] unit increase	Illumina [13479295] (imputed)	N
1603	chr9	133515337	133515338	rs2313526	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	9q34.12	FUBP3, PRDM12	rs2313526-?	NR	8E-28		0.034285337	[0.028-0.04] unit increase	Illumina [27896057] (imputed)	N
1603	chr9	133534278	133534279	rs3802344	24315451	van der Valk RJ	2013-12-05	J Allergy Clin Immunol	Fraction of exhaled nitric oxide values in childhood are associated with 17q11.2-q12 and 17q12-q21 variants.	Fractional exhaled nitric oxide (childhood)	5,131 European ancestry individuals, 1,155 Hispanic individuals, 2,572 individuals	NA	9q34.12	PRDM12	rs3802344-A	0.07	5E-6		0.111	[0.064-0.158] unit increase	Affymetrix, Illumina [2253077] (imputed)	N
1604	chr9	133593938	133593939	rs2583839	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q34.12	NR	rs2583839-A	0.458589	1E-14				Affymetrix, Illumina [24649327] (imputed)	N
1604	chr9	133593938	133593939	rs2583839	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	9q34.12	NR	rs2583839-A	0.401825	5E-16		0.015271	[0.012-0.019] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1604	chr9	133601597	133601597	rs71389341	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	9q34.12	ABL1	rs71389341-GTA	0.396534	8E-12		0.01548136	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1604	chr9	133623965	133623966	rs2791733	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q34.12	NR	rs2791733-A	0.44599	8E-13				Affymetrix, Illumina [23472807] (imputed)	N
1604	chr9	133623965	133623966	rs2791733	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	9q34.12	NR	rs2791733-A	0.400359	4E-14		0.015084	[0.011-0.019] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1604	chr9	133626637	133626638	rs2855167	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	9q34.12		rs2855167-?	NR	3E-11				NR [~ 8900000] (imputed)	N
1604	chr9	133627889	133627890	rs2791734	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	9q34.12		rs2791734-G	NR	1E-12		0.0138	[0.01-0.018] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1604	chr9	133628654	133628655	rs2791736	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q34.12	NR	rs2791736-T	0.4598	2E-21				Affymetrix, Illumina [24588908] (imputed)	N
1604	chr9	133628654	133628655	rs2791736	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	9q34.12	NR	rs2791736-T	0.401612	4E-19		0.016743	[0.013-0.02] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1604	chr9	133629460	133629461	rs10793968	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque score in type 2 diabetes	691 African American individuals	205 African American individuals	9q34.12	ABL1	rs10793968-?	NR	5E-6		0.832	[0.39-1.27] unit increase	Illumina [at least 13000000] (imputed)	N
1604	chr9	133631715	133631716	rs36023901	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	9q34.12	ABL1	rs36023901-A	0.399064	1E-10		0.014590167	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
1604	chr9	133632757	133632758	rs2791737	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	9q34.12	ABL1	rs2791737-G	0.397462	7E-13		0.01633623	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1604	chr9	133633506	133633507	rs2791738	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q34.12	NR	rs2791738-A	0.586442	5E-15				Affymetrix, Illumina [22063850] (imputed)	N
1604	chr9	133634535	133634535	rs111645729	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	9q34.12	ABL1	rs111645729-TGCTCA	0.395944	9E-11		0.0146757355	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
1604	chr9	133635320	133635321	rs2313532	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	9q34.12	NR	rs2313532-G	0.598441	2E-16		0.015891	[0.012-0.02] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
1604	chr9	133635320	133635321	rs2313532	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	9q34.12		rs2313532-?	NR	4E-14				NR [~ 8900000] (imputed)	N
1604	chr9	133655453	133655454	rs34224906	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage colony stimulating factor levels	840 Finnish ancestry individuals	NA	9q34.12	NR	rs34224906-C	NR	6E-6		0.9286	[0.5-1.36] SD units decrease	NR [10700000] (imputed)	N
1605	chr9	133748082	133748083	rs2070997	22952603	Hart AB	2012-08-28	PLoS One	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 10 individuals	NA	9q34.12	ABL1	rs2070997-?	NR	8E-6	(SF6)			Affymetrix [5476100] (imputed)	N
1605	chr9	133765655	133765656	rs10901296	20639394	Kang TW	2010-07-16	Hum Mol Genet	Genome-wide association of serum bilirubin levels in Korean population.	Bilirubin levels	8,841 Korean ancestry individuals	1,096 Korean ancestry individuals	9q34.12	intergenic	rs10901296-?	0.016	3E-7		0.092	[NR] bilirubin level increase	Affymetrix [1227049] (imputed)	N
1605	chr9	133783024	133783025	rs3739514	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	9q34.12	NR	rs3739514-?	NR	5E-11				Affymetrix [~ 8270000] (imputed)	N
1605	chr9	133783024	133783025	rs3739514	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	9q34.12	NA	rs3739514-A	0.3384	7E-11		0.0132	[0.0093-0.0171] unit increase	NR [~ 27400000] (imputed)	N
1605	chr9	133783565	133783566	rs4740383	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	9q34.12		rs4740383-?	NR	3E-11				NR [~ 8900000] (imputed)	N
1605	chr9	133786651	133786652	rs6597649	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	9q34.12	NR	rs6597649-C	0.5196	2E-9		0.0234	[0.016-0.031] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1605	chr9	133786651	133786652	rs6597649	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	9q34.12	NR	rs6597649-T	0.3994	3E-8		1.034	[1.02-1.05]	Affymetrix, Illumina [NR] (imputed)	N
1605	chr9	133788464	133788465	rs6597653	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	9q34.12		rs6597653-C	NR	4E-10		0.0106	[0.0073-0.0139] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1605	chr9	133788464	133788465	rs6597653	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	9q34.12		rs6597653-C	NR	2E-10		0.0123	[0.0086-0.016] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1605	chr9	133788464	133788465	rs6597653	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		9q34.12	FIBCD1	rs6597653-G	0.602596	1E-9		0.0085299	[0.0058-0.0113] unit decrease	Affymetrix [12370749]	N
1605	chr9	133797392	133797393	rs182799903	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	9q34.12	FIBCD1	rs182799903-T	2.66613351139918E-5	1E-6		0.28936	[NR] unit increase	Affymetrix [> 30000000] (imputed)	N
1606	chr9	133848436	133848437	rs12346096	26423011	Wain LV	2015-09-27	Lancet Respir Med	Novel insights into the genetics of smoking behaviour, lung function, and chronic obstructive pulmonary disease (UK BiLEVE): a genetic association study in UK Biobank.	Smoking status (heavy vs never)	24,457 European ancestry heavy smokers, 24,474 European ancestry never smokers	NA	9q34.12	FIBCD1, LAMC3	rs12346096-G	0.158	4E-7		1.101	[1.061-1.143]	Affymetrix [28509962] (imputed)	N
1606	chr9	133852688	133852690	rs34587625	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Non-word reading	3,409 European ancestry individuals	NA	9q34.12	Intergenic	rs34587625-GCA	0.751625	3E-6		0.499538	[0.29-0.71] unit increase	Illumina [6969139] (imputed)	N
1606	chr9	133861263	133861264	rs6597665	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Degraded stimulus continuous performance test score	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	9q34.12	LAMC3	rs6597665-G	NR	4E-6		0.18781757	[0.11-0.27] unit increase	Illumina [> 6200000] (imputed)	N
1606	chr9	133897939	133897939	rs138913144	28333195	Uimari O	2017-04-01	Hum Reprod	Genome-wide genetic analyses highlight mitogen-activated protein kinase (MAPK) signaling in the pathogenesis of endometriosis.	Endometriosis	3,194 European ancestry cases, 7,060 European ancestry controls.	NA	9q34.12	LAMC3	rs138913144-?	NR	6E-7		1.2987013	[1.15-1.45]	Illumina [NR] (imputed)	N
1606	chr9	133897939	133897939	rs138913144	28333195	Uimari O	2017-04-01	Hum Reprod	Genome-wide genetic analyses highlight mitogen-activated protein kinase (MAPK) signaling in the pathogenesis of endometriosis.	Deep ovarian and/or rectovaginal disease with dense adhesions	1,364 European ancestry cases, 7,060 European ancestry controls.	NA	9q34.12	LAMC3	rs138913144-?	NR	1E-6		1.4705882	[1.23-1.75]	Illumina [NR] (imputed)	N
1606	chr9	133916144	133916145	rs10793983	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	9q34.12		rs10793983-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1606	chr9	133916386	133916387	rs11244254	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	9q34.12		rs11244254-T	0.49	2E-12		7.07	z score increase	Affymetrix [9061022] (imputed)	N
1606	chr9	133916386	133916387	rs11244254	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	9q34.12	NR	rs11244254-T	0.4609	2E-15				NR [9056863] (imputed)	N
1606	chr9	133922994	133922995	rs137904686	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical thickness (MOSTest)	26,502 European ancestry individuals	NA	9q34.12	SIX3	rs137904686-?		6E-9				NR [7428630] (imputed)	N
1606	chr9	133924450	133924451	rs869457	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	9q34.12	NR	rs869457-T	0.314421	5E-18		0.0291219	[0.023-0.036] unit decrease	NR [19129689] (imputed)	N
1606	chr9	133926752	133926753	rs551692767	29460428	Gelernter J	2018-02-20	Alcohol Clin Exp Res	Genomewide association study of alcohol dependence and related traits in a Thai population.	Alcohol consumption (max-drinks)	1,045 Thai ancestry individuals	NA	9q34.12	LAMC3	rs551692767-C	0.277	2E-6		0.3431	[0.2-0.49] unit increase	Illumina [at least 4683137] (imputed)	N
1606	chr9	133927877	133927878	rs10901333	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	9q34.12		rs10901333-G	0.5	6E-26		10.53	z score increase	Affymetrix [9061022] (imputed)	N
1606	chr9	133927877	133927878	rs10901333	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	9q34.12		rs10901333-G	0.5	5E-19		8.92	z score increase	Affymetrix [9061022] (imputed)	N
1606	chr9	133927877	133927878	rs10901333	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	9q34.12	NR	rs10901333-G	0.4674	1E-17				NR [9056863] (imputed)	N
1606	chr9	133928344	133928345	rs12349966	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	9q34.12		rs12349966-?	NR	7E-9				NR [~ 8900000] (imputed)	N
1606	chr9	133928789	133928790	rs55950144	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 53)	19,670 European ancestry individuals	NA	9q34.12		rs55950144-?	NR	2E-9				NR [9705931] (imputed)	N
1606	chr9	133931122	133931123	rs11244263	34356046	Oluwafemi OO	2021-07-01	Genes (Basel)	Genome-Wide Association Studies of Conotruncal Heart Defects with Normally Related Great Vessels in the United States.	Conotruncal heart defects with normally related great vessels	294 European ancestry cases, 2,976 European ancestry controls, 913 cases, 559 controls, 641 trios	NA	9q34.12		rs11244263-?	NR	9E-6				Affymetrix, Illumina [3311160] (imputed)	N
1606	chr9	133952023	133952024	rs928674	27749845	Lesseur C	2016-10-17	Nat Genet	Genome-wide association analyses identify new susceptibility loci for oral cavity and pharyngeal cancer.	Oral cavity cancer	2,717 European ancestry cases, 273 cases, 5,984 European ancestry controls, 601 controls	NA	9q34.12	LAMC3, LOC105376298	rs928674-G	0.12	2E-8		1.3252	NR	Illumina [7574753] (imputed)	N
1607	chr9	133962572	133962573	rs77452476	34642315	Ferreiro-Iglesias A	2021-10-12	Nat Commun	Germline determinants of humoral immune response to HPV-16 protect against oropharyngeal cancer.	Oropharynx cancer and human papilloma virus 16 negative oropharyngeal cancer	2,359 European ancestry cases, 565 European ancestry controls	NA	9q34.12		rs77452476-G	NR	3E-7		1.2859		Illumina [up to 7574753] (imputed)	N
1607	chr9	133962572	133962573	rs77452476	27749845	Lesseur C	2016-10-17	Nat Genet	Genome-wide association analyses identify new susceptibility loci for oral cavity and pharyngeal cancer.	Oral cavity and pharyngeal cancer	2,717 European ancestry oral cavity cancer cases, 273 oral cavity cancer cases, 2,506 European ancestry oropharynx cancer cases, 135 oropharynx cancer cases, 305 European and unknown ancestry hypopharynx cancer cases, 73 European and unknown ancestry overlapping cases, 25 European and unknown ancestry cases, 5,984 European ancestry controls, 601 controls	NA	9q34.12	LAMC3	rs77452476-C	0.16	3E-7		1.24		Illumina [7574753] (imputed)	N
1607	chr9	134016120	134016121	rs2281901	31219225	Young KA	2019-06-20	Obesity (Silver Spring)	Genome-Wide Association Study Identifies Loci for Liver Enzyme Concentrations in Mexican Americans: The GUARDIAN Consortium.	Aspartate aminotransferase levels	3,644 Mexican American ancestry individuals	NA	9q34.13	NUP214	rs2281901-?	NR	5E-6				Illumina [659222]	N
1608	chr9	134203544	134203545	rs4584185	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	9q34.13	PLPP7	rs4584185-C	0.45	6E-13		0.48	[0.34-0.62] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1608	chr9	134203544	134203545	rs4584185	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	9q34.13	PLPP7	rs4584185-C	0.44	5E-12		0.4851	[0.35-0.62] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1608	chr9	134210287	134210288	rs7850041	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	9q34.13	PPAPDC3	rs7850041-C	0.617446	6E-9	(-28 ms)	0.0335888	[0.022-0.045] unit decrease	Affymetrix [10000000] (imputed)	N
1608	chr9	134210287	134210288	rs7850041	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	9q34.13	PPAPDC3	rs7850041-C	0.617446	4E-11	(-26 ms)	0.038348	[0.027-0.05] unit decrease	Affymetrix [10000000] (imputed)	N
1608	chr9	134210287	134210288	rs7850041	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	9q34.13	PPAPDC3	rs7850041-C	0.617446	2E-12	(-22 ms)	0.0404992	[0.029-0.052] unit decrease	Affymetrix [10000000] (imputed)	N
1608	chr9	134210287	134210288	rs7850041	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	9q34.13	PPAPDC3	rs7850041-C	0.617446	1E-9	(-20 ms)	0.0364468	[0.025-0.048] unit decrease	Affymetrix [10000000] (imputed)	N
1608	chr9	134210287	134210288	rs7850041	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	9q34.13	PPAPDC3	rs7850041-C	0.617446	1E-12	(-24 ms)	0.0411787	[0.03-0.052] unit decrease	Affymetrix [10000000] (imputed)	N
1609	chr9	134220324	134220325	rs11794552	31311600	Namjou B	2019-07-17	BMC Med	GWAS and enrichment analyses of non-alcoholic fatty liver disease identify new trait-associated genes and pathways across eMERGE Network.	Liver fibrosis in non-alcoholic fatty liver disease	235 European ancestry individuals	NA	9q34.13	intergenic	rs11794552-T	0.192641	1E-6		0.617349	[0.37-0.86] unit increase	NR [7263501] (imputed)	N
1609	chr9	134245697	134245698	rs10901057	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	9q34.13		rs10901057-G	NR	2E-10		0.0172	[0.012-0.022] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
1609	chr9	134245697	134245698	rs10901057	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	9q34.13	PRRC2B	rs10901057-C	0.2577	3E-8		0.0264	[0.017-0.036] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1609	chr9	134246794	134246794	rs201421930	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	9q34.13	NR	rs201421930-AT	NR	1E-9		0.0174	[0.012-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
1609	chr9	134271961	134271962	rs140612024	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		PRRC2B	rs140612024-?	NR	8E-13	(male)	2.51538	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1609	chr9	134277940	134277941	rs77018640	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		PRRC2B	rs77018640-?	NR	2E-12		1.50455	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1609	chr9	134308490	134308491	rs4740238	31902109	Li D	2020-01-04	Genes Genomics	Progressive effects of single-nucleotide polymorphisms on 16 phenotypic traits based on longitudinal data.	Lung function	up to 4,291 Korean ancestry individuals	NA	9q34.13	PRRC2B	rs4740238-A	0.24	6E-6	(FEV1)	0.2966	NR unit increase	Affymetrix [305158]	N
1609	chr9	134334587	134334588	rs34553878	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	9q34.13		rs34553878-A	0.892	1E-10		0.012	[0.0081-0.0159] unit decrease	NR [NR] (imputed)	N
1609	chr9	134334587	134334588	rs34553878	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	9q34.13	NR	rs34553878-G	0.111	1E-12		0.0124133	[0.009-0.0158] unit increase	NR [9732723] (imputed)	N
1609	chr9	134334587	134334588	rs34553878	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	9q34.13	NR	rs34553878-G	0.111	1E-9		0.024670737	[0.017-0.033] unit increase	NR [~ 10000000] (imputed)	N
1610	chr9	134426037	134426038	rs11243421	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein AGER	5,368 Icelandic ancestry individuals	NA	9q34.13		rs11243421-T	0.4244	1E-16		0.157685	[0.12-0.19] unit increase	Illumina [7506463] (imputed)	N
1610	chr9	134426375	134426376	rs28767468	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q34.13	UCK1	rs28767468-G	0.554	4E-16	(Advanced glycosylation end product-specific receptor, soluble, AGER.4125.52.2)	0.21	[0.15-0.27] unit decrease	Affymetrix [10572788] (imputed)	N
1610	chr9	134426625	134426626	rs4740273	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Receptor for advanced glycosylation end products levels	21,758 European ancestry individuals	9,173 individuals	9q34.13		rs4740273-A	0.44	2E-32		0.1171	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1610	chr9	134450072	134450073	rs11243437	22952603	Hart AB	2012-08-28	PLoS One	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 10 individuals	NA	9q34.13	intergenic	rs11243437-?	NR	7E-6	(SF4)			Affymetrix [5476100] (imputed)	N
1610	chr9	134457579	134457580	rs3780269	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous malignant melanoma	36,760 European ancestry cases, 375,188 European ancestry controls	NA	9q34.13	RAPGEF1	rs3780269-A	0.3093	2E-8		1.0589855	NR	Affymetrix, Illumina [NR] (imputed)	N
1610	chr9	134471263	134471264	rs875968	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Nevus count or cutaneous melanoma	36,760 European ancestry cutaneous melanoma cases, 375,188 European ancestry controls, 12,930 European ancestry individuals, 52,847 individuals	NA	9q34.13	RAPGEF1	rs875968-C	0.655128	3E-9				Affymetrix, Illumina [NR] (imputed)	N
1611	chr9	134577236	134577237	rs12000258	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip	15 Asian ancestry cases, 13 European ancestry cases, 15 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	9q34.13	NR	rs12000258-?	NR	3E-6		4.51	[3.38-6.01]	Illumina [539000] (imputed)	N
1611	chr9	134584307	134584308	rs13283933	31809533	Han X	2019-09-06	Hum Mol Genet	Genome-wide association analysis of 95 549 individuals identifies novel loci and genes influencing optic disc morphology.	Optic disc size	67,040 British ancestry individuals	28,509 European ancestry individuals	9q34.13	RAPGEF1	rs13283933-T	0.29	2E-13		0.02	unit decrease	Affymetrix [8928767] (imputed)	N
1611	chr9	134596356	134596357	rs17148219	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	9q34.13	NR	rs17148219-?	NR	3E-6				Affymetrix [NR]	N
1611	chr9	134598882	134598883	rs12683159	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9q34.13		rs12683159-?	NR	9E-9				NR [~ 8900000] (imputed)	N
1611	chr9	134601457	134601458	rs56005989	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Kidney volume	32,860 European ancestry individuals	NA	9q34.13	RAPGEF1	rs56005989-?	NR	2E-8		0.0403	NR L increase	Affymetrix [9390170] (imputed)	N
1612	chr9	134644207	134644208	rs10901091	29959729	Zhong XL	2018-06-29	Neurotox Res	A Genome-Wide Association Study of ?-Synuclein Levels in Cerebrospinal Fluid.	Cerebrospinal fluid ?-synuclein levels	59 European ancestry individuals with normal cognition, 101 European ancestry individuals with mild cognitive impairment, 49 European ancestry Alzheimer's disease cases	NA	9q34.13	RAPGEF1	rs10901091-G	0.06473	8E-7		0.2749	unit increase	Illumina [519442]	N
1612	chr9	134648924	134648925	rs150018970	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	9q34.13	RAPGEF1	rs150018970-A	0.00963241325614697	7E-14	(G_Ruminococcus_HB)	2.20159	[1.63-2.78] unit decrease	Illumina [7711310] (imputed)	N
1612	chr9	134710600	134710601	rs2987390	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	9q34.13	NR	rs2987390-C	NR	1E-8		5.701	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1612	chr9	134737750	134737751	rs913509	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	9q34.13		rs913509-A	0.656	7E-11		0.0096	[0.0067-0.0125] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1613	chr9	134773651	134773652	rs9411412	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	9q34.13	Intergenic	rs9411412-T	0.3418	1E-11	(MTAG)	0.0093	[0.0066-0.012] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1613	chr9	134848998	134848999	rs10901115	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	9q34.13	NR	rs10901115-?	NR	5E-6		4.573	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1613	chr9	134849253	134849254	rs4601460	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	9q34.13		rs4601460-?	NR	6E-9				NR [~ 8900000] (imputed)	N
1613	chr9	134854279	134854280	rs4564007	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	9q34.13	MED27	rs4564007-T	0.320515	1E-8		0.0122135	[0.008-0.0164] unit increase	Affymetrix [NR] (imputed)	N
1613	chr9	134866270	134866271	rs7044246	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	9q34.13	NR	rs7044246-C	0.302187	2E-8		0.03815302	[0.025-0.052] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1613	chr9	134866270	134866271	rs7044246	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	9q34.13	Intergenic	rs7044246-T	0.7006	2E-8		0.0175	[0.011-0.024] unit increase	Affymetrix, Illumina [10100000] (imputed)	N
1613	chr9	134866270	134866271	rs7044246	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability (MTAG)	436,124 European ancestry individuals	NA	9q34.13	MED27	rs7044246-?	NR	2E-8		5.619	z score increase	Affymetrix, Illumina, Perlegen [7333576] (imputed)	N
1613	chr9	134866270	134866271	rs7044246	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability	107,207 European ancestry individuals	NA	9q34.13	MED27	rs7044246-?	NR	8E-6		4.473	z score increase	Affymetrix, Illumina [7357080] (imputed)	N
1613	chr9	134868416	134868417	rs9411425	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	9q34.13	NR	rs9411425-G	0.3531	5E-9		0.0236	[0.016-0.031] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1613	chr9	134870754	134870755	rs4382592	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	9q34.13	NR	rs4382592-?		7E-9		0.0136721	[0.0091-0.0183] unit increase	Affymetrix [19400418] (imputed)	N
1613	chr9	134870754	134870755	rs4382592	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	9q34.13	Intergenic	rs4382592-T	0.3059	1E-14	(MTAG)	0.015	[0.011-0.019] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1613	chr9	134870754	134870755	rs4382592	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	9q34.13	Intergenic	rs4382592-T	0.3059	2E-10		0.0135	[0.0094-0.0176] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1613	chr9	134870754	134870755	rs4382592	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	9q34.13	Intergenic	rs4382592-T	0.3057	2E-20	(MTAG)	0.0166	[0.013-0.02] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1614	chr9	134874804	134874805	rs9328534	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	9q34.13	Intergenic	rs9328534-T	0.683	2E-16	(MTAG)	0.0202	[0.015-0.025] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1614	chr9	134878436	134878437	rs3935101	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	9q34.13		rs3935101-A	NR	3E-9		0.012	[0.0081-0.0159] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1614	chr9	134881442	134881443	rs7025089	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	9q34.13	NA	rs7025089-A	0.6792	4E-10		0.0118	[0.0081-0.0155] unit decrease	NR [~ 27400000] (imputed)	N
1614	chr9	134883418	134883419	rs9411331	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	9q34.13		rs9411331-A	0.684	8E-22		0.0145	[0.012-0.017] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1614	chr9	134884053	134884054	rs9411332	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	9q34.13	Intergenic	rs9411332-T	0.683	1E-23	(MTAG)	0.0141	[0.011-0.017] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1614	chr9	134886836	134886837	rs7040224	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	9q34.13	NR	rs7040224-A	0.3161	4E-9		1.038	[1.03-1.05]	Affymetrix, Illumina [NR] (imputed)	N
1614	chr9	134886836	134886837	rs7040224	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	9q34.13		rs7040224-A	0.3154	6E-23	(conditional-joint)	0.0149	[0.012-0.018] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1614	chr9	134907262	134907263	rs7026534	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	9q34.13	NA	rs7026534-T	0.3036	2E-8	(Female)	1.047	[1.03-1.06]	Affymetrix, Illumina [NR] (imputed)	N
1614	chr9	134907262	134907263	rs7026534	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	9q34.13	NR	rs7026534-G	0.704	1E-11		0.00802303	[0.0057-0.0103] unit decrease	NR [9732723] (imputed)	N
1614	chr9	134907262	134907263	rs7026534	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	9q34.13	NR	rs7026534-G	0.703821	3E-9	(Conditioned on chr9:134334588)	0.016603015	[0.011-0.022] unit decrease	NR [~ 10000000] (imputed)	N
1614	chr9	134930212	134930213	rs4962223	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	9q34.13	NR	rs4962223-C	0.301	1E-8		0.00912315	[0.006-0.0122] unit decrease	NR [9732723] (imputed)	N
1614	chr9	134933729	134933730	rs4246167	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	9q34.13		rs4246167-C	0.334	3E-9		0.007	[0.005-0.009] unit increase	NR [NR] (imputed)	N
1614	chr9	134933729	134933730	rs4246167	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	9q34.13		rs4246167-?	NR	3E-12				NR [~ 8900000] (imputed)	N
1614	chr9	134976651	134976652	rs10793903	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	9q34.13		rs10793903-A	0.1146	1E-8		0.0126	[0.0083-0.0169] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1614	chr9	134976749	134976750	rs10901124	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	9q34.13	NR	rs10901124-A	0.137177	2E-8		0.05734183	[0.037-0.077] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1615	chr9	135005874	135005875	rs79022888	32238385	Nakayama A	2020-04-01	Ann Rheum Dis	Subtype-specific gout susceptibility loci and enrichment of selection pressure on ABCG2 and ALDH2 identified by subtype genome-wide meta-analyses of clinically defined gout patients.	Gout (normal type)	92 Japanese ancestry male cases, 4,554 Japanese ancestry male controls	NA	9q34.13	MED27, NTNG2	rs79022888-T	0.048	5E-7		3.44	[2.12-5.57]	Illumina [7206774] (imputed)	N
1615	chr9	135021607	135021608	rs11243638	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	9q34.13	Intergenic	rs11243638-T	0.2098	5E-10	(MTAG)	0.0126	[0.0087-0.0165] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1615	chr9	135021607	135021608	rs11243638	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	9q34.13		rs11243638-T	0.2118	2E-9	(conditional-joint)	0.0104	[0.0071-0.0137] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1615	chr9	135030648	135030649	rs12005151	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	9q34.13		rs12005151-A	0.3615	4E-9		0.0087	[0.0058-0.0116] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1615	chr9	135030648	135030649	rs12005151	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	9q34.13	Intergenic	rs12005151-A	0.3615	2E-10	(MTAG)	0.0087	[0.006-0.0114] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1615	chr9	135030648	135030649	rs12005151	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	9q34.13	Intergenic	rs12005151-A	0.3632	2E-8	(MTAG)	0.0134	[0.0087-0.0181] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1615	chr9	135032889	135032890	rs1412076	29631575	Obeidat M	2018-04-10	Respir Res	The genetics of smoking in individuals with chronic obstructive pulmonary disease.	Current cigarettes per day in chronic obstructive pulmonary disease	2,854 European ancestry individuals	NA	9q34.13	NTNG2, SETX	rs1412076-?	NR	2E-7		0.1	[0.061-0.139] unit increase	Illumina [7807992] (imputed)	N
1615	chr9	135033544	135033545	rs11243647	32109663	Feitosa MF	2020-02-14	Atherosclerosis	Gene discovery for high-density lipoprotein cholesterol level change over time in prospective family studies.	HDL cholesterol levels	3,567 European ancestry men, 4,171 European ancestry women	NA	9q34.13	NTNG2	rs11243647-G	0.21	1E-7		0.11	[0.071-0.149] unit increase	Affymetrix, Illumina [6523511] (imputed)	N
1615	chr9	135048888	135048889	rs6597547	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	9q34.13	NR	rs6597547-?	NR	4E-6		4.617	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1615	chr9	135096766	135096767	rs11243676	18204098	Hom G	2008-01-20	N Engl J Med	Association of systemic lupus erythematosus with C8orf13-BLK and ITGAM-ITGAX.	Systemic lupus erythematosus	1,311 European ancestry cases, 3,340 European ancestry controls	793 European ancestry cases, 857 European ancestry controls	9q34.13	NTNG2	rs11243676-A	0.07	3E-6				Illumina [502033]	N
1615	chr9	135108550	135108551	rs2854925	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	9q34.13	SETX	rs2854925-?	NR	3E-8	(CE 16:0)	0.41317362	[0.27-0.56] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1615	chr9	135110625	135110626	rs17385973	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9q34.13	NR	rs17385973-C	0.03659	1E-9	(SDS)	0.05101	NR unit increase	Illumina [1671387] (imputed)	N
1615	chr9	135111002	135111003	rs192147659	33602968	Skuladottir AT	2021-02-18	Sci Rep	A meta-analysis uncovers the first sequence variant conferring risk of Bell's palsy.	Bell's palsy	4,714 European ancestry cases, 1,011,520 European ancestry controls	NA	9q34.13	NTNG2	rs192147659-T	0.0013	5E-6		3.19824	NR	Affymetrix, Illumina [30341632] (imputed)	N
1616	chr9	135257304	135257305	rs116440239	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	9q34.13	NR	rs116440239-?	NR	2E-6		1.8562	[0.92-2.79] unit decrease	Illumina [at least 560000] (imputed)	N
1616	chr9	135264973	135264974	rs554479	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9q34.13	NR	rs554479-A	0.03484	2E-8	(APRT)	0.1468	NR unit decrease	Illumina [1671387] (imputed)	N
1617	chr9	135300916	135300917	rs1001606	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure	35,269 European ancestry cases, 63,451 European ancestry controls	NA	9q34.13	NR	rs1001606-A	0.767228	6E-6		1.067	[1.04-1.1]	Affymetrix [7791636] (imputed)	N
1617	chr9	135301388	135301389	rs999483	31168069	Ward J	2019-06-05	Mol Psychiatry	The genomic basis of mood instability: identification of 46 loci in 363,705 UK Biobank participants, genetic correlation with psychiatric disorders, and association with gene expression and function.	Mood instability	157,039 European ancestry cases, 206,666 European ancestry controls	NA	9q34.13	intergenic	rs999483-?	NR	2E-10		0.00841434	[0.0058-0.011] unit decrease	Affymetrix [NR] (imputed)	N
1617	chr9	135301388	135301389	rs999483	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Irritable mood	366,726 European ancestry individuals	NA	9q34.13	CFAP77	rs999483-T	0.247877	2E-12		7.03	z score decrease	NR [~ 10847151] (imputed)	N
1617	chr9	135311667	135311668	rs79768058	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	21,147 European ancestry cases, 434,460 European ancestry controls	NA	9q34.13	CFAP77	rs79768058-G	2.0E-4	1E-8		2.87	[1.81-3.93]	NR [10849711] (imputed)	N
1617	chr9	135344406	135344407	rs569434	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	9q34.13	C9orf171	rs569434-G	0.248	9E-6	(Fat oxidation )	0.03	[NR] %NPEE increase	Illumina [899892]	N
1618	chr9	135408092	135408093	rs62578598	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure in major depressive disorder-negative individuals	10,701 European ancestry cases, 39,677 European ancestry controls	NA	9q34.13	NR	rs62578598-T	0.0547323	8E-6		1.121	[1.07-1.17]	Affymetrix [7791636] (imputed)	N
1618	chr9	135431418	135431419	rs76026826	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	9q34.13		rs76026826-G	0.983	4E-12				Affymetrix [10369434] (imputed)	N
1618	chr9	135490355	135490356	rs12682765	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	9q34.13	NR	rs12682765-T	0.245527	4E-8		0.044652354	[0.029-0.061] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1618	chr9	135490355	135490356	rs12682765	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	9q34.13		rs12682765-T	0.7751	1E-11	(conditional-joint)	0.0114	[0.0081-0.0147] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1618	chr9	135490438	135490439	rs12685594	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	9q34.13		rs12685594-?	NR	6E-9				NR [~ 8900000] (imputed)	N
1618	chr9	135490490	135490491	rs12682775	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	9q34.13		rs12682775-T	0.7754	1E-12		0.0119	[0.0086-0.0152] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1618	chr9	135511289	135511290	rs10435974	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	9q34.13	NA	rs10435974-T		1E-8		0.0123206	[0.0081-0.0165] unit decrease	Illumina [13288253] (imputed)	N
1618	chr9	135511289	135511290	rs10435974	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	9q34.13	Intergenic	rs10435974-T	0.2406	3E-11	(MTAG)	0.0102	[0.0073-0.0131] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1619	chr9	135531183	135531184	rs17149416	34050765	Zhang L	2021-05-29	J Clin Endocrinol Metab	Joint genome-wide association analyses identified 49 novel loci for age at natural menopause.	Age at menopause	181,219 European ancestry individuals, 43,861 East Asian ancestry individuals	NA	9q34.13		rs17149416-T	0.26	2E-8		0.07	unit increase	Illumina [2093892] (imputed)	N
1619	chr9	135531183	135531184	rs17149416	34050765	Zhang L	2021-05-29	J Clin Endocrinol Metab	Joint genome-wide association analyses identified 49 novel loci for age at natural menopause.	Age at menopause	181,219 European ancestry individuals	NA	9q34.13		rs17149416-T	0.26	6E-7		0.08	unit increase	Illumina [2398641] (imputed)	N
1619	chr9	135589431	135589432	rs139960758	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	9q34.13		rs139960758-G	0.977	6E-12				Affymetrix [10369434] (imputed)	N
1619	chr9	135589431	135589432	rs139960758	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	9q34.13		rs139960758-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1619	chr9	135616377	135616378	rs13294558	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	9q34.13		rs13294558-G	0.951	2E-10				Affymetrix [10369434] (imputed)	N
1619	chr9	135618282	135618283	rs11243897	18839057	Lesch KP	2008-10-07	J Neural Transm (Vienna)	Molecular genetics of adult ADHD: converging evidence from genome-wide association and extended pedigree linkage studies.	Attention deficit hyperactivity disorder	343 European ancestry cases, 250 European ancestry controls, 54 controls	NA	9q34.13	C9orf98	rs11243897-?	NR	6E-8				Affymetrix [504219]	N
1619	chr9	135622136	135622137	rs117310165	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	9q34.13	NR	rs117310165-A	NR	7E-12		0.0719	[0.051-0.092] unit decrease	Affymetrix [9000000] (imputed)	N
1619	chr9	135632492	135632493	rs12552369	23377640	GENDEP Investigators	2013-02-01	Am J Psychiatry	Common genetic variation and antidepressant efficacy in major depressive disorder: a meta-analysis of three genome-wide pharmacogenetic studies.	Major depressive disorder	Up to 2,256 European ancestry cases	NA	9q34.13	C9orf98	rs12552369-A	0.494	8E-6	(% improvement - 2 weeks)	1.155	[1.1-1.21]	Affymetrix, Illumina [1200000] (imputed)	N
1619	chr9	135643689	135643690	rs147341010	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Systolic blood pressure (long-term average)	5,304 African American individuals, 13,137 European ancestry individuals, 1,317 Hispanic individuals, 1,439 admixed individuals, 703 Chinese ancestry individuals	6,500 African American individuals, 2,451 European ancestry individuals, 2,869 Hispanic individuals	9q34.13	NR	rs147341010-T	0.0459	4E-7		2.4533	[1.51-3.4] mmHg increase	Affymetrix, Illumina [NR] (imputed)	N
1619	chr9	135643689	135643690	rs147341010	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Systolic blood pressure (long-term average)	5,304 African American individuals	6,500 African American individuals	9q34.13	NR	rs147341010-T	0.0467	7E-7		2.4292	[1.47-3.39] mmHg increase	Affymetrix, Illumina [NR] (imputed)	N
1619	chr9	135643689	135643690	rs147341010	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Systolic blood pressure (baseline)	5,304 African American individuals, 13,137 European ancestry individuals, 1,317 Hispanic individuals, 1,439 admixed individuals, 703 Chinese ancestry individuals	6,500 African American individuals, 2,451 European ancestry individuals, 2,869 Hispanic individuals	9q34.13	NR	rs147341010-T	0.0459	2E-7		3.136	[1.95-4.32] mmHg decrease	Affymetrix, Illumina [NR] (imputed)	N
1619	chr9	135643689	135643690	rs147341010	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Systolic blood pressure (baseline)	5,304 African American individuals	6,500 African American individuals	9q34.13	NR	rs147341010-T	0.0467	9E-7		3.0142	[1.81-4.22] mmHg increase	Affymetrix, Illumina [NR] (imputed)	N
1619	chr9	135647020	135647021	rs10901212	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	9q34.13	AK8	rs10901212-C	0.089	5E-6	(IL6 )	0.03	[NR] pg/mL increase	Illumina [899892]	N
1620	chr9	135709380	135709381	rs944028	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	9q34.13	Intergenic	rs944028-T	0.8051	9E-10	(MTAG)	0.0138	[0.0093-0.0183] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1620	chr9	135709380	135709381	rs944028	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	9q34.13	Intergenic	rs944028-T	0.8053	2E-12	(MTAG)	0.0147	[0.011-0.019] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1620	chr9	135718583	135718584	rs214626	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	9q34.13		rs214626-A	0.1894	2E-8		0.0101	[0.0066-0.0136] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1620	chr9	135718583	135718584	rs214626	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	9q34.13	Intergenic	rs214626-A	0.1894	7E-11	(MTAG)	0.0109	[0.0076-0.0142] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1620	chr9	135756904	135756905	rs67035325	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	9q34.13		rs67035325-?	NR	4E-16				NR [~ 8900000] (imputed)	N
1620	chr9	135763140	135763141	rs2231409	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	9q34.13	NR	rs2231409-A	NR	4E-9		0.0443	[0.03-0.059] unit decrease	Affymetrix [9000000] (imputed)	N
1620	chr9	135763815	135763816	rs2073869	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	9q34.13	NR	rs2073869-?		2E-10		0.0186112	[0.013-0.024] unit increase	Affymetrix [19400418] (imputed)	N
1620	chr9	135776033	135776034	rs1076160	19169254	Nair RP	2009-01-25	Nat Genet	Genome-wide scan reveals association of psoriasis with IL-23 and NF-kappaB pathways.	Psoriasis	1,359 European ancestry cases, 1,400 European ancestry controls	5,048 European ancestry cases, 5,041 European ancestry controls	9q34.13	TSC1	rs1076160-T	0.48	6E-6		1.09	[NR]	Perlegen [~ 2500000] (imputed)	N
1621	chr9	135843524	135843525	rs11243957	34409643	Freitag-Wolf S	2021-08-18	J Clin Periodontol	Sex-specific genetic factors affect the risk of early-onset periodontitis in Europeans.	Early onset periodontitis x sex interaction	545 Dutch ancestry women, 351 Dutch ancestry men	NA	9q34.13		rs11243957-?	NR	6E-6				Illumina [79780573] (imputed)	N
1621	chr9	135844885	135844886	rs62578223	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	9q34.13	NR	rs62578223-A	NR	6E-12		0.0326	[0.023-0.042] unit increase	Affymetrix [9000000] (imputed)	N
1621	chr9	135845034	135845035	rs2905072	19416921	Scott LJ	2009-05-05	Proc Natl Acad Sci U S A	Genome-wide association and meta-analysis of bipolar disorder in individuals of European ancestry.	Bipolar disorder	3,683 European ancestry cases, 14,507 European ancestry controls	NA	9q34.13	NR	rs2905072-A	0.77	6E-6		1.21	[1.11-1.32]	Affymetrix, Illumina [2366197] (imputed)	N
1621	chr9	135857645	135857646	rs117868203	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	9q34.13	GFI1B	rs117868203-T	0.017434	8E-18		0.077300765	[0.06-0.095] unit increase	Affymetrix [93095623] (imputed)	N
1621	chr9	135857645	135857646	rs117868203	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	9q34.13	GFI1B	rs117868203-T	0.017443	1E-23		0.09008002	[0.072-0.108] unit increase	Affymetrix [93095623] (imputed)	N
1621	chr9	135857645	135857646	rs117868203	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	9q34.13	GFI1B	rs117868203-T	0.017	7E-11		0.1005433	[0.07-0.131] unit increase	Affymetrix [~ 2500000] (imputed)	N
1621	chr9	135857645	135857646	rs117868203	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	9q34.13	GFI1B	rs117868203-T	0.017	4E-11		0.1015093	[0.071-0.132] unit increase	Affymetrix [~ 2500000] (imputed)	N
1621	chr9	135858224	135858225	rs8192999	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	9q34.13	GFI1B	rs8192999-C	0.312464	2E-12		0.017774155	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1621	chr9	135859114	135859115	rs10793949	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	9q34.13	GFI1B	rs10793949-G	0.361387	2E-12		0.01674578	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1621	chr9	135859698	135859699	rs189806022	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	9q34.13	GFI1B	rs189806022-C	0.00180400000000003	2E-10		0.18746506	[0.13-0.25] unit decrease	Affymetrix [93095623] (imputed)	N
1621	chr9	135859698	135859699	rs189806022	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	9q34.13	GFI1B	rs189806022-C	0.00180400000000003	2E-10		0.18666741	[0.13-0.24] unit decrease	Affymetrix [93095623] (imputed)	N
1621	chr9	135860411	135860412	rs73660574	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	9q34.13	GFI1B	rs73660574-A	0.041405	1E-73		0.106448546	[0.095-0.118] unit decrease	Affymetrix [93095623] (imputed)	N
1621	chr9	135860411	135860412	rs73660574	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	9q34.13	GFI1B	rs73660574-A	0.041434	2E-36		0.07632137	[0.064-0.088] unit decrease	Affymetrix [93095623] (imputed)	N
1621	chr9	135860411	135860412	rs73660574	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	9q34.13	GFI1B	rs73660574-A	0.041386	1E-35		0.074626215	[0.063-0.086] unit decrease	Affymetrix [93095623] (imputed)	N
1621	chr9	135860411	135860412	rs73660574	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	9q34.13	GFI1B	rs73660574-A	0.041399	4E-21		0.049026	[0.038-0.06] unit decrease	Affymetrix [93095623] (imputed)	N
1621	chr9	135860411	135860412	rs73660574	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	9q34.13	GFI1B	rs73660574-A	0.041397	2E-23		0.058156997	[0.047-0.07] unit decrease	Affymetrix [93095623] (imputed)	N
1621	chr9	135860411	135860412	rs73660574	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	9q34.13	GFI1B	rs73660574-A	0.0414060000000001	3E-24		0.060192864	[0.049-0.072] unit decrease	Affymetrix [93095623] (imputed)	N
1621	chr9	135860411	135860412	rs73660574	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	9q34.13		rs73660574-?	NR	6E-88				NR [~ 8900000] (imputed)	N
1621	chr9	135860411	135860412	rs73660574	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	9q34.13	GFI1B	rs73660574-A	NR	3E-25		0.111407	[0.09-0.133] unit decrease	Affymetrix [16832071] (imputed)	N
1621	chr9	135860411	135860412	rs73660574	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	9q34.13	GFI1B	rs73660574-A	0.0431	6E-30		0.1093852	[0.091-0.128] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1621	chr9	135860411	135860412	rs73660574	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	9q34.13	GFI1B	rs73660574-A	0.043	3E-13		0.07048694	[0.052-0.089] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1621	chr9	135861989	135861990	rs61469632	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Prostate cancer	7,438 White British ancestry cases, 118,206 White British ancestry controls	NA	9q34.13		rs61469632-?	NR	1E-6		0.826881	[0.75-0.9]	NR [680312]	N
1621	chr9	135861989	135861990	rs61469632	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	9q34.13	GFI1B	rs61469632-C	0.062926	1E-21		0.04519535	[0.036-0.054] unit decrease	Affymetrix [93095623] (imputed)	N
1621	chr9	135861989	135861990	rs61469632	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	9q34.13	GFI1B	rs61469632-C	0.0622	5E-22		0.07229228	[0.058-0.087] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1621	chr9	135861989	135861990	rs61469632	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	9q34.13	GFI1B	rs61469632-C	0.0622	5E-19		0.06672304	[0.052-0.081] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1621	chr9	135861989	135861990	rs61469632	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	9q34.13	GFI1B	rs61469632-C	0.0622	4E-11		0.04892122	[0.034-0.063] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1621	chr9	135861989	135861990	rs61469632	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	9q34.13	GFI1B	rs61469632-C	0.0622	1E-22		0.07338335	[0.059-0.088] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1621	chr9	135861989	135861990	rs61469632	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	9q34.13	GFI1B	rs61469632-C	0.0622	9E-21		0.06988945	[0.055-0.085] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1621	chr9	135862631	135862632	rs633153	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	9q34.13	GFI1B	rs633153-T	0.565301	1E-9		0.0140910465	[0.0095-0.0186] unit increase	Affymetrix [93095623] (imputed)	N
1621	chr9	135863637	135863638	rs143926538	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Platelet distribution width	445,262 European ancestry individuals	NA	9q34.13		rs143926538-?	NR	4E-13		0.12916	[0.092-0.166] unit increase	NR [9800000] (imputed)	N
1621	chr9	135863637	135863638	rs143926538	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	9q34.13	GFI1B	rs143926538-T	0.00267300000000004	7E-9		0.12632045	[0.084-0.169] unit increase	Affymetrix [93095623] (imputed)	N
1621	chr9	135863637	135863638	rs143926538	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	9q34.13	GFI1B	rs143926538-T	0.00269699999999995	1E-12		0.15149258	[0.11-0.19] unit decrease	Affymetrix [93095623] (imputed)	N
1621	chr9	135863637	135863638	rs143926538	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	9q34.13	GFI1B	rs143926538-T	0.00270000000000004	2E-13		0.15733038	[0.12-0.2] unit decrease	Affymetrix [93095623] (imputed)	N
1621	chr9	135863847	135863848	rs527297896	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	8,188 South Asian ancestry individuals	NA	9q34.13	NR	rs527297896-T	0.00510953	2E-18		0.984232	[0.76-1.2] SD units decrease	Affymetrix, Illumina [28492373] (imputed)	N
1621	chr9	135864176	135864177	rs2073820	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	9q34.13	GFI1B	rs2073820-T	0.6201	8E-9		0.02110327	[0.014-0.028] unit increase	Affymetrix [~ 2500000] (imputed)	N
1621	chr9	135864435	135864436	rs60757417	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Pyruvate levels	114,749 European ancestry individuals	NA	9q34.13		rs60757417-C	0.940418	2E-12		0.0624686	[0.045-0.08] unit increase	NR [11722792] (imputed)	N
1621	chr9	135864435	135864436	rs60757417	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NOG	5,366 Icelandic ancestry individuals	NA	9q34.13		rs60757417-G	0.06851	8E-13		0.270693	[0.2-0.34] unit decrease	Illumina [7506463] (imputed)	N
1621	chr9	135864435	135864436	rs60757417	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NOG	5,366 Icelandic ancestry individuals	NA	9q34.13		rs60757417-G	0.06851	2E-12		0.266434	[0.19-0.34] unit decrease	Illumina [7506463] (imputed)	N
1621	chr9	135864435	135864436	rs60757417	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	9q34.13	GFI1B	rs60757417-G	0.060316	2E-11		0.031395815	[0.022-0.041] unit decrease	Affymetrix [93095623] (imputed)	N
1621	chr9	135864435	135864436	rs60757417	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	9q34.13	GFI1B	rs60757417-G	0.060321	5E-45		0.06697067	[0.058-0.076] unit decrease	Affymetrix [93095623] (imputed)	N
1621	chr9	135864435	135864436	rs60757417	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	9q34.13	GFI1B	rs60757417-G	0.060317	2E-39		0.062604204	[0.053-0.072] unit decrease	Affymetrix [93095623] (imputed)	N
1621	chr9	135864435	135864436	rs60757417	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	9q34.13	GFI1B	rs60757417-G	0.05974	3E-18		0.042173814	[0.033-0.052] unit decrease	Affymetrix [93095623] (imputed)	N
1621	chr9	135864435	135864436	rs60757417	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	9q34.13	GFI1B	rs60757417-G	0.059734	5E-77		0.09001913	[0.081-0.1] unit decrease	Affymetrix [93095623] (imputed)	N
1621	chr9	135864435	135864436	rs60757417	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	9q34.13	GFI1B	rs60757417-G	0.060315	1E-10		0.030401962	[0.021-0.04] unit decrease	Affymetrix [93095623] (imputed)	N
1621	chr9	135864435	135864436	rs60757417	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	9q34.13	GFI1B	rs60757417-G	0.060344	2E-13		0.037047423	[0.027-0.047] unit decrease	Affymetrix [93095623] (imputed)	N
1621	chr9	135864435	135864436	rs60757417	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	9q34.13	GFI1B	rs60757417-G	0.060324	2E-19		0.04352164	[0.034-0.053] unit decrease	Affymetrix [93095623] (imputed)	N
1621	chr9	135864435	135864436	rs60757417	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	9q34.13	GFI1B	rs60757417-G	0.059731	2E-110		0.10800601	[0.099-0.117] unit increase	Affymetrix [93095623] (imputed)	N
1621	chr9	135864435	135864436	rs60757417	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	9q34.13	GFI1B	rs60757417-G	0.060299	2E-28		0.0517403	[0.043-0.06] unit decrease	Affymetrix [93095623] (imputed)	N
1621	chr9	135864435	135864436	rs60757417	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	9q34.13	GFI1B	rs60757417-G	0.06034	3E-17		0.039685	[0.031-0.049] unit decrease	Affymetrix [93095623] (imputed)	N
1621	chr9	135864435	135864436	rs60757417	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	9q34.13	GFI1B	rs60757417-G	0.0602970000000001	6E-41		0.062896654	[0.054-0.072] unit decrease	Affymetrix [93095623] (imputed)	N
1621	chr9	135864435	135864436	rs60757417	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	9q34.13	GFI1B	rs60757417-G	0.060315	1E-20		0.044410776	[0.035-0.054] unit decrease	Affymetrix [93095623] (imputed)	N
1621	chr9	135864435	135864436	rs60757417	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	9q34.13	GFI1B	rs60757417-G	0.060317	7E-47		0.06804897	[0.059-0.077] unit decrease	Affymetrix [93095623] (imputed)	N
1621	chr9	135864435	135864436	rs60757417	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	9q34.13	GFI1B	rs60757417-G	0.060311	3E-43		0.065290034	[0.056-0.075] unit decrease	Affymetrix [93095623] (imputed)	N
1621	chr9	135864435	135864436	rs60757417	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	9q34.13	NR	rs60757417-G	0.060728	6E-49		0.060154	[0.052-0.068] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
1621	chr9	135864435	135864436	rs60757417	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	9q34.13		rs60757417-?	NR	3E-45				NR [~ 8900000] (imputed)	N
1621	chr9	135864457	135864458	rs376762177	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Platelet count	444,866 European ancestry individuals	NA	9q34.13		rs376762177-?	NR	1E-9		0.447437	[0.3-0.6] unit decrease	NR [9800000] (imputed)	N
1621	chr9	135864457	135864458	rs376762177	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean platelet volume	445,364 European ancestry individuals	NA	9q34.13		rs376762177-?	NR	6E-32		0.806521	[0.67-0.95] unit increase	NR [9800000] (imputed)	N
1621	chr9	135864484	135864485	rs148728985	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Platelet count	444,866 European ancestry individuals	NA	9q34.13		rs148728985-?	NR	9E-17		0.974803	[0.72-1.23] unit decrease	NR [9800000] (imputed)	N
1621	chr9	135864484	135864485	rs148728985	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean platelet volume	445,364 European ancestry individuals	NA	9q34.13		rs148728985-?	NR	5E-43		1.61495	[1.37-1.86] unit increase	NR [9800000] (imputed)	N
1621	chr9	135864487	135864488	rs570058270	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Platelet distribution width	445,262 European ancestry individuals	NA	9q34.13		rs570058270-?	NR	8E-10		0.737323	[0.51-0.97] unit increase	NR [9800000] (imputed)	N
1621	chr9	135864487	135864488	rs570058270	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Platelet count	444,866 European ancestry individuals	NA	9q34.13		rs570058270-?	NR	2E-29		1.19203	[0.97-1.41] unit decrease	NR [9800000] (imputed)	N
1621	chr9	135864487	135864488	rs570058270	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean platelet volume	445,364 European ancestry individuals	NA	9q34.13		rs570058270-?	NR	1E-45		1.43327	[1.22-1.65] unit increase	NR [9800000] (imputed)	N
1621	chr9	135864493	135864494	rs748303990	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean platelet volume	445,364 European ancestry individuals	NA	9q34.13		rs748303990-?	NR	1E-17		1.36948	[1.02-1.72] unit increase	NR [9800000] (imputed)	N
1621	chr9	135864505	135864506	rs192854759	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Platelet count	444,866 European ancestry individuals	NA	9q34.13		rs192854759-?	NR	1E-9		0.619797	[0.4-0.84] unit decrease	NR [9800000] (imputed)	N
1621	chr9	135864505	135864506	rs192854759	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean platelet volume	445,364 European ancestry individuals	NA	9q34.13		rs192854759-?	NR	7E-13		0.656698	[0.45-0.87] unit increase	NR [9800000] (imputed)	N
1621	chr9	135864512	135864513	rs150813342	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Pyruvate levels	114,749 European ancestry individuals	NA	9q34.13		rs150813342-C	0.991886	2E-11		0.159452	[0.11-0.21] unit increase	NR [11722792] (imputed)	N
1621	chr9	135864512	135864513	rs150813342	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NOG	5,366 Icelandic ancestry individuals	NA	9q34.13		rs150813342-T	0.01644	5E-23		0.72355	[0.58-0.87] unit decrease	Illumina [7506463] (imputed)	N
1621	chr9	135864512	135864513	rs150813342	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NOG	5,366 Icelandic ancestry individuals	NA	9q34.13		rs150813342-T	0.01644	3E-25		0.761732	[0.62-0.91] unit decrease	Illumina [7506463] (imputed)	N
1621	chr9	135864512	135864513	rs150813342	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	9q34.13		rs150813342-T	NR	4E-232		0.4339	[0.41-0.46] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1621	chr9	135864512	135864513	rs150813342	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	9q34.13		rs150813342-T	NR	2E-39		0.1337	[0.11-0.15] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
1621	chr9	135864512	135864513	rs150813342	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	9q34.13	GFI1B	rs150813342-T	0.00792999999999999	1E-23		0.12898862	[0.1-0.15] unit decrease	Affymetrix [93095623] (imputed)	N
1621	chr9	135864512	135864513	rs150813342	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	9q34.13	GFI1B	rs150813342-T	0.007911	1E-25		0.13638386	[0.11-0.16] unit decrease	Affymetrix [93095623] (imputed)	N
1621	chr9	135864512	135864513	rs150813342	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	9q34.13	GFI1B	rs150813342-T	0.007911	3E-23		0.12971099	[0.1-0.16] unit decrease	Affymetrix [93095623] (imputed)	N
1621	chr9	135864512	135864513	rs150813342	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	9q34.13	GFI1B	rs150813342-T	0.00739500000000004	1E-56		0.21434213	[0.19-0.24] unit decrease	Affymetrix [93095623] (imputed)	N
1621	chr9	135864512	135864513	rs150813342	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	9q34.13	GFI1B	rs150813342-T	0.00740200000000002	3E-74		0.24767755	[0.22-0.27] unit increase	Affymetrix [93095623] (imputed)	N
1621	chr9	135864512	135864513	rs150813342	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	9q34.13	GFI1B	rs150813342-T	0.00739299999999998	5E-198		0.4056913	[0.38-0.43] unit decrease	Affymetrix [93095623] (imputed)	N
1621	chr9	135864512	135864513	rs150813342	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	9q34.13	GFI1B	rs150813342-T	0.00792700000000002	2E-23		0.12861075	[0.1-0.15] unit decrease	Affymetrix [93095623] (imputed)	N
1621	chr9	135864512	135864513	rs150813342	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	9q34.13	GFI1B	rs150813342-T	0.00788900000000004	6E-12		0.09079951	[0.065-0.117] unit decrease	Affymetrix [93095623] (imputed)	N
1621	chr9	135864512	135864513	rs150813342	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	9q34.13	GFI1B	rs150813342-T	0.00741400000000003	1E-255		0.46393394	[0.44-0.49] unit increase	Affymetrix [93095623] (imputed)	N
1621	chr9	135864512	135864513	rs150813342	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	9q34.13	GFI1B	rs150813342-T	0.00794600000000001	1E-15		0.0886815	[0.065-0.112] unit decrease	Affymetrix [93095623] (imputed)	N
1621	chr9	135864512	135864513	rs150813342	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	9q34.13	GFI1B	rs150813342-T	0.00795299999999999	6E-21		0.12048404	[0.095-0.146] unit decrease	Affymetrix [93095623] (imputed)	N
1621	chr9	135864512	135864513	rs150813342	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	9q34.13	GFI1B	rs150813342-T	0.00792999999999999	2E-13		0.09512101	[0.07-0.12] unit increase	Affymetrix [93095623] (imputed)	N
1621	chr9	135864512	135864513	rs150813342	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	9q34.13	GFI1B	rs150813342-T	0.00791299999999995	5E-22		0.1252591	[0.1-0.151] unit decrease	Affymetrix [93095623] (imputed)	N
1621	chr9	135864512	135864513	rs150813342	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	9q34.13	GFI1B	rs150813342-T	0.00791399999999998	1E-20		0.12118078	[0.096-0.147] unit decrease	Affymetrix [93095623] (imputed)	N
1621	chr9	135864512	135864513	rs150813342	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	9q34.13	GFI1B	rs150813342-T	0.00791500000000001	7E-45		0.18238781	[0.16-0.21] unit decrease	Affymetrix [93095623] (imputed)	N
1621	chr9	135864512	135864513	rs150813342	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	9q34.13	GFI1B	rs150813342-T	0.00792000000000004	1E-56		0.20478918	[0.18-0.23] unit decrease	Affymetrix [93095623] (imputed)	N
1621	chr9	135864512	135864513	rs150813342	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q34.13	NR	rs150813342-T	0.00692479	3E-287				Affymetrix, Illumina [24588908] (imputed)	N
1621	chr9	135864512	135864513	rs150813342	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	9q34.13	NR	rs150813342-T	0.00717	2E-292		0.412802	[0.39-0.43] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1621	chr9	135864512	135864513	rs150813342	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q34.13	NR	rs150813342-C	0.992706	2E-357				Affymetrix, Illumina [17210439] (imputed)	N
1621	chr9	135864512	135864513	rs150813342	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	9q34.13	NR	rs150813342-C	0.99246	4E-363		0.468583	[0.45-0.49] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
1621	chr9	135864512	135864513	rs150813342	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q34.13	NR	rs150813342-T	0.00766058	9E-55				Affymetrix, Illumina [19872809] (imputed)	N
1621	chr9	135864512	135864513	rs150813342	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	9q34.13	NR	rs150813342-T	0.007902	2E-58		0.186676	[0.16-0.21] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
1621	chr9	135864512	135864513	rs150813342	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count (basophil)	171,846 European ancestry individuals	NA	9q34.13	GFI1B	rs150813342-T	0.0085	3E-15		0.1562862	[0.12-0.2] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1621	chr9	135864512	135864513	rs150813342	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	9q34.13	GFI1B	rs150813342-T	0.0085	1E-9		0.1229726	[0.083-0.163] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1621	chr9	135864512	135864513	rs150813342	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	9q34.13	GFI1B	rs150813342-T	0.0085	5E-11		0.1332752	[0.093-0.173] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1621	chr9	135864512	135864513	rs150813342	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	9q34.13	GFI1B	rs150813342-T	0.0085	7E-26		0.2126004	[0.17-0.25] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1621	chr9	135864512	135864513	rs150813342	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	9q34.13	GFI1B	rs150813342-T	0.0085	2E-13		0.1490594	[0.11-0.19] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1621	chr9	135864512	135864513	rs150813342	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	9q34.13	GFI1B	rs150813342-T	0.0085	1E-12		0.1450291	[0.11-0.18] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1621	chr9	135864512	135864513	rs150813342	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	9q34.13	GFI1B	rs150813342-T	0.0079	6E-27		0.2309338	[0.19-0.27] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1621	chr9	135864512	135864513	rs150813342	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	9q34.13	GFI1B	rs150813342-T	0.0079	4E-40		0.2802819	[0.24-0.32] unit increase	Affymetrix [~ 2500000] (imputed)	N
1621	chr9	135864512	135864513	rs150813342	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	9q34.13	GFI1B	rs150813342-T	0.008	6E-88		0.4220157	[0.38-0.46] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1621	chr9	135864512	135864513	rs150813342	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	9q34.13	GFI1B	rs150813342-T	0.0085	3E-12		0.1415295	[0.1-0.18] unit increase	Affymetrix [~ 2500000] (imputed)	N
1621	chr9	135864512	135864513	rs150813342	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	9q34.13	GFI1B	rs150813342-T	0.0084	7E-11		0.1333624	[0.093-0.173] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1621	chr9	135864512	135864513	rs150813342	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	9q34.13	GFI1B	rs150813342-T	0.0079	2E-107		0.4683289	[0.43-0.51] unit increase	Affymetrix [~ 2500000] (imputed)	N
1621	chr9	135864512	135864513	rs150813342	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	9q34.13	GFI1B	rs150813342-T	0.0084	7E-11		0.1328551	[0.093-0.173] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1621	chr9	135864512	135864513	rs150813342	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	9q34.13	GFI1B	rs150813342-T	0.0085	2E-15		0.1595646	[0.12-0.2] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1621	chr9	135864512	135864513	rs150813342	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	9q34.13	GFI1B	rs150813342-T	0.0085	2E-11		0.1365211	[0.097-0.176] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1621	chr9	135864512	135864513	rs150813342	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	9q34.13	GFI1B	rs150813342-T	0.0085	6E-22		0.1942417	[0.15-0.23] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1621	chr9	135864512	135864513	rs150813342	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of white cells	171,996 European ancestry individuals	NA	9q34.13	GFI1B	rs150813342-T	0.0084	2E-9		0.1187524	[0.08-0.157] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1621	chr9	135864512	135864513	rs150813342	27668658	Iotchkova V	2016-11-01	Nat Genet	Discovery and refinement of genetic loci associated with cardiometabolic risk using dense imputation maps.	Cardiometabolic and hematological traits	up to 35,981 European ancestry individuals	up to 102,505 European ancestry individuals	9q34.13	GFI1B	rs150813342-T		5E-57	(PLT)	0.408	[0.36-0.46] unit decrease	Affymetrix, Illumina [17000000] (imputed)	N
1621	chr9	135865358	135865359	rs681470	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	9q34.13		rs681470-A	0.872	2E-9				Affymetrix [10369434] (imputed)	N
1621	chr9	135865919	135865920	rs681842	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	9q34.13	GFI1B	rs681842-A	0.794038	2E-9		0.017090192	[0.012-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1621	chr9	135866647	135866648	rs4962034	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	9q34.13	GFI1B	rs4962034-G	0.610518	2E-9		0.013825441	[0.0093-0.0183] unit decrease	Affymetrix [93095623] (imputed)	N
1621	chr9	135866647	135866648	rs4962034	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	9q34.13	GFI1B	rs4962034-G	0.610602	7E-11		0.016220877	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1621	chr9	135866647	135866648	rs4962034	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	9q34.13		rs4962034-?	NR	2E-16				NR [~ 8900000] (imputed)	N
1621	chr9	135866692	135866693	rs667805	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	9q34.13	GFI1B	rs667805-G	0.135489	3E-14		0.024922159	[0.018-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
1621	chr9	135869210	135869211	rs114741563	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	9q34.13	GFI1B	rs114741563-C	0.00747100000000001	1E-11		0.08945346	[0.064-0.115] unit increase	Affymetrix [93095623] (imputed)	N
1621	chr9	135869210	135869211	rs114741563	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	9q34.13	GFI1B	rs114741563-C	0.00747500000000001	3E-21		0.12131425	[0.096-0.146] unit increase	Affymetrix [93095623] (imputed)	N
1621	chr9	135869210	135869211	rs114741563	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	9q34.13	GFI1B	rs114741563-C	0.0072	3E-10		0.1390473	[0.096-0.182] unit increase	Affymetrix [~ 2500000] (imputed)	N
1621	chr9	135872877	135872877	rs578015595	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	9q34.13		rs578015595-CA	0.32599	2E-12		0.016805155	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1621	chr9	135873476	135873477	rs2078825	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	9q34.13		rs2078825-A	0.242635	3E-11		0.017290173	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1621	chr9	135874751	135874752	rs550065584	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	9q34.13		rs550065584-A	0.00165899999999997	4E-22		0.2775868	[0.22-0.33] unit decrease	Affymetrix [93095623] (imputed)	N
1621	chr9	135874751	135874752	rs550065584	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	9q34.13		rs550065584-A	0.00165999999999999	4E-23		0.28427216	[0.23-0.34] unit decrease	Affymetrix [93095623] (imputed)	N
1621	chr9	135874751	135874752	rs550065584	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	9q34.13	NR	rs550065584-G	0.99828	1E-37		0.340778	[0.29-0.39] SD unit increase	Affymetrix, Illumina [50036608] (imputed)	N
1621	chr9	135874751	135874752	rs550065584	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count (basophil)	171,846 European ancestry individuals	NA	9q34.13	intergenic	rs550065584-A	0.0022	4E-23		0.4032677	[0.32-0.48] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1621	chr9	135874751	135874752	rs550065584	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of white cells	171,996 European ancestry individuals	NA	9q34.13	intergenic	rs550065584-A	0.0022	5E-25		0.4180908	[0.34-0.5] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1621	chr9	135874751	135874752	rs550065584	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of granulocytes	170,223 European ancestry individuals	NA	9q34.13	intergenic	rs550065584-A	0.0022	2E-22		0.3980763	[0.32-0.48] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1621	chr9	135876033	135876034	rs4962035	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	9q34.13		rs4962035-A	0.062373	1E-27		0.051709034	[0.042-0.061] unit increase	Affymetrix [93095623] (imputed)	N
1621	chr9	135876534	135876535	rs13284142	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	9q34.13		rs13284142-G	0.441677	3E-28		0.025383146	[0.021-0.03] unit increase	Affymetrix [93095623] (imputed)	N
1621	chr9	135877106	135877107	rs34149660	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	9q34.13		rs34149660-C	0.110621	1E-15		0.03090429	[0.023-0.038] unit increase	Affymetrix [93095623] (imputed)	N
1621	chr9	135877106	135877107	rs34149660	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	9q34.13	intergenic	rs34149660-C	0.1135	2E-9		0.03527397	[0.024-0.047] unit increase	Affymetrix [~ 2500000] (imputed)	N
1621	chr9	135877106	135877107	rs34149660	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	9q34.13	intergenic	rs34149660-C	0.1135	2E-10		0.03754083	[0.026-0.049] unit increase	Affymetrix [~ 2500000] (imputed)	N
1621	chr9	135877106	135877107	rs34149660	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	9q34.13	intergenic	rs34149660-C	0.1135	4E-13		0.04271211	[0.031-0.054] unit increase	Affymetrix [~ 2500000] (imputed)	N
1621	chr9	135877277	135877278	rs74612091	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	9q34.13		rs74612091-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1621	chr9	135877277	135877278	rs74612091	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	9q34.13		rs74612091-?	NR	7E-29				NR [~ 8900000] (imputed)	N
1621	chr9	135877277	135877278	rs74612091	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	9q34.13		rs74612091-?	NR	2E-45				NR [~ 8900000] (imputed)	N
1621	chr9	135877633	135877634	rs12378573	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	9q34.13		rs12378573-A	0.443955	6E-23		0.022762746	[0.018-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1621	chr9	135879137	135879138	rs1633768	33057200	Bao EL	2020-10-14	Nature	Inherited myeloproliferative neoplasm risk affects haematopoietic stem cells.	Myeloproliferative neoplasms	1,086 British ancestry cases, 407,155 British ancestry controls, 640 Finnish ancestry cases, 176,259 Finnish ancestry controls	NA	9q34.13	GFI1B	rs1633768-T	0.2708	1E-9		1.2	1.13-1.27	Affymetrix [6845584] (imputed)	N
1621	chr9	135879208	135879209	rs4962085	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	9q34.13		rs4962085-T	0.063418	1E-16		0.03827515	[0.029-0.047] unit increase	Affymetrix [93095623] (imputed)	N
1621	chr9	135879455	135879456	rs7032317	25886283	Chang X	2015-04-17	PLoS One	Genome-wide association study of serum minerals levels in children of different ethnic background.	Calcium levels	5,261 European ancestry children, 3,817 African American ancestry children		9q34.13	NR	rs7032317-T	NR	5E-6	(EA)	0.04442	[-0.06348--0.02536] mg/dl decrease	Illumina [up to 507950]	N
1621	chr9	135879541	135879542	rs524137	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q34.13	NR	rs524137-T	0.289747	3E-11				Affymetrix, Illumina [19905671] (imputed)	N
1621	chr9	135880468	135880469	rs605642	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	9q34.13		rs605642-A	0.582378	3E-24		0.023504606	[0.019-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1621	chr9	135880468	135880469	rs605642	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	9q34.13		rs605642-A	0.582387	1E-14		0.018325513	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1621	chr9	135880468	135880469	rs605642	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	9q34.13	intergenic	rs605642-A	0.5803	2E-11		0.02440247	[0.017-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
1621	chr9	135880468	135880469	rs605642	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	9q34.13	intergenic	rs605642-A	0.5804	1E-12		0.02606256	[0.019-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1621	chr9	135880468	135880469	rs605642	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	9q34.13	intergenic	rs605642-A	0.5804	6E-15		0.02839948	[0.021-0.036] unit increase	Affymetrix [~ 2500000] (imputed)	N
1621	chr9	135880468	135880469	rs605642	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	9q34.13	intergenic	rs605642-A	0.5805	1E-14		0.02827073	[0.021-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
1621	chr9	135880468	135880469	rs605642	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	9q34.13	intergenic	rs605642-A	0.5804	2E-13		0.02687869	[0.02-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
1621	chr9	135890057	135890058	rs529482203	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	8,189 South Asian ancestry individuals	NA	9q34.13	NR	rs529482203-G	0.00710392	5E-25		0.985416	[0.8-1.17] SD units increase	Affymetrix, Illumina [28493265] (imputed)	N
1621	chr9	135891266	135891267	rs117405640	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Tissue factor levels	21,758 European ancestry individuals	9,173 individuals	9q34.13		rs117405640-A	0.94	5E-24		0.2498	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1621	chr9	135895915	135895916	rs200773990	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	9q34.13	EEF1A1P5	rs200773990-A	0.049827	4E-9		0.030778334	[0.021-0.041] unit increase	Affymetrix [93095623] (imputed)	N
1621	chr9	135897769	135897770	rs80271436	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Stem cell factor levels	8,290 Finnish ancestry individuals	NA	9q34.13	NR	rs80271436-G		1E-6		0.237	[0.14-0.33] SD units increase	NR [10700000] (imputed)	N
1621	chr9	135905701	135905702	rs140871186	32592749	Butler-Laporte G	2020-06-24	Clin Microbiol Infect	Elevated body-mass index is associated with an increased risk of infectious disease admissions and mortality: a mendelian randomization study.	Sepsis (28-day mortality)	210 European ancestry cases, 1,827 European ancestry controls	NA	9q34.13	GTF3C5	rs140871186-C	0.99	3E-8		0.33	[0.21-0.45] unit decrease	NR [NR]	N
1621	chr9	135917743	135917744	rs8193016	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q34.13	CEL	rs8193016-T	0.035	8E-24	(Bile salt-activated lipase, CEL.9796.4.3)	0.69	[0.55-0.83] unit increase	Affymetrix [10572788] (imputed)	N
1621	chr9	135919500	135919501	rs138796740	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	9q34.13	ABO	rs138796740-?	NR	4E-8				Affymetrix, Illumina [10537485] (imputed)	N
1621	chr9	135919500	135919501	rs138796740	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	9q34.13	ABO	rs138796740-?	NR	3E-8	(EA)			Affymetrix, Illumina [10537485] (imputed)	N
1622	chr9	135930788	135930789	rs8193017	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CEL	5,360 Icelandic ancestry individuals	NA	9q34.13		rs8193017-C	0.04005	3E-82		0.882675	[0.79-0.97] unit increase	Illumina [7506463] (imputed)	N
1622	chr9	135936324	135936325	rs541856133	34012112	Chiou J	2021-05-19	Nature	Interpreting type 1 diabetes risk with genetics and single-cell epigenomics.	Type 1 diabetes	18,942 European ancestry cases, 501,638 European ancestry controls	NA	9q34.13	CEL	rs541856133-T	0.001509	4E-17		1.1022301	[0.85-1.36] unit increase	Affymetrix, Illumina [62116689] (imputed)	N
1622	chr9	135954309	135954310	rs509064	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CEL	5,360 Icelandic ancestry individuals	NA	9q34.13		rs509064-G	0.4809	1E-12		0.134187	[0.097-0.171] unit decrease	Illumina [7506463] (imputed)	N
1622	chr9	135968224	135968225	rs610551	34532976	Wan J	2021-09-17	J Thromb Haemost	Kallikrein augments the anticoagulant function of the protein C system in thrombin generation.	Thrombomodulin modified thrombin generation parameter (endogenous thrombin potential)	327 European ancestry individuals	NA	9q34.13		rs610551-A	0.135	6E-7		0.486	% decrease	Illumina [7000000] (imputed)	N
1622	chr9	135974078	135974079	rs1062356	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	9q34.13	NR	rs1062356-C	NR	2E-15		0.0269	[0.02-0.034] unit increase	Affymetrix [9000000] (imputed)	N
1622	chr9	135976697	135976698	rs35108384	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	Factor VIII levels	25,897 European ancestry individuals, 4,500 African American individuals, 773 Asian ancestry individuals, 1,440 Hispanic individuals	NA	9q34.2	ABO	rs35108384-?	NR	5E-12	(EA)			Affymetrix, Illumina [13887196] (imputed)	N
1622	chr9	135976697	135976698	rs35108384	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	Factor VIII levels	25,897 European ancestry individuals, 4,500 African American individuals, 773 Asian ancestry individuals, 1,440 Hispanic individuals	NA	9q34.2	ABO	rs35108384-?	NR	2E-12				Affymetrix, Illumina [13887196] (imputed)	N
1622	chr9	135977365	135977366	rs34170541	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	9q34.2	NR	rs34170541-G	NR	2E-12		0.0427	[0.031-0.055] unit increase	Affymetrix [9000000] (imputed)	N
1622	chr9	135982492	135982493	rs45487303	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	9q34.2	CEL	rs45487303-C	0.981875	7E-27	(CEL, 9796_4_3)	0.99482405	[0.81-1.17] unit decrease	Illumina [> 1000000] (imputed)	N
1622	chr9	135984679	135984680	rs118070731	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CEL	5,360 Icelandic ancestry individuals	NA	9q34.2		rs118070731-A	0.01901	2E-8		0.387347	[0.25-0.52] unit increase	Illumina [7506463] (imputed)	N
1622	chr9	135987016	135987017	rs615477	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	9q34.2		rs615477-?	NR	4E-10				NR [~ 8900000] (imputed)	N
1622	chr9	135993473	135993474	rs62574330	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	9q34.2		rs62574330-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1622	chr9	135995303	135995304	rs59449333	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Myringotomy	4,138 European ancestry cases, 85,089 European ancestry controls	NA	9q34.2	NR	rs59449333-?	NR	6E-6		9.1002	[1.52-16.68] unit decrease	Illumina [at least 560000] (imputed)	N
1622	chr9	136000949	136000950	rs614515	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	9q34.2		rs614515-?	NR	6E-11				NR [~ 8900000] (imputed)	N
1622	chr9	136001993	136001994	rs573738	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	9q34.2	GBGT1	rs573738-?	NR	9E-6	(SM 16:1)	0.3112003	[0.17-0.45] unit increase	Affymetrix [at least 2500000] (imputed)	N
1622	chr9	136006848	136006849	rs117993921	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	9q34.2	NR	rs117993921-T	NR	4E-10		0.0534	[0.037-0.07] unit increase	Affymetrix [9000000] (imputed)	N
1622	chr9	136020692	136020693	rs7044265	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	9q34.2	NR	rs7044265-C	NR	1E-27		0.0467	[0.038-0.055] unit decrease	Affymetrix [9000000] (imputed)	N
1622	chr9	136022953	136022954	rs114968084	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	9q34.2		rs114968084-G	0.97	4E-18				Affymetrix [10369434] (imputed)	N
1622	chr9	136031314	136031315	rs117595304	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	9q34.2	NR	rs117595304-C	NR	9E-37		0.2121	[0.18-0.24] unit decrease	Affymetrix [9000000] (imputed)	N
1622	chr9	136032601	136032602	rs34454320	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 157,769 European ancestry controls	NA	9q34.2	NR	rs34454320-?	NR	5E-11		0.0867	[0.061-0.113] unit decrease	Affymetrix, Illumina [12923718] (imputed)	N
1622	chr9	136034681	136034682	rs35775139	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	9q34.2	NR	rs35775139-C	NR	2E-33		0.0316	[0.027-0.037] unit decrease	Affymetrix [9000000] (imputed)	N
1622	chr9	136037160	136037161	rs35565187	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	9q34.2	NR	rs35565187-A	NR	4E-21		0.0959	[0.076-0.116] unit decrease	Affymetrix [9000000] (imputed)	N
1622	chr9	136037258	136037259	rs2073925	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	9q34.2	NR	rs2073925-A	NR	2E-11		0.0365	[0.026-0.047] unit decrease	Affymetrix [9000000] (imputed)	N
1622	chr9	136037741	136037742	rs2073924	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	9q34.2	NR	rs2073924-A	NR	6E-19		0.0264	[0.021-0.032] unit increase	Affymetrix [9000000] (imputed)	N
1622	chr9	136039935	136039936	rs7040564	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	9q34.2	NR	rs7040564-T	NR	9E-13		0.0282	[0.02-0.036] unit decrease	Affymetrix [9000000] (imputed)	N
1622	chr9	136050553	136050554	rs7850541	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	9q34.2	NR	rs7850541-C	NR	4E-45		0.0399	[0.034-0.045] unit decrease	Affymetrix [9000000] (imputed)	N
1623	chr9	136053109	136053110	rs79198796	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	9q34.2	NR	rs79198796-T	NR	2E-29		0.0828	[0.068-0.097] unit decrease	Affymetrix [9000000] (imputed)	N
1623	chr9	136057145	136057146	rs72769485	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	9q34.2	NR	rs72769485-A	NR	6E-18		0.0762	[0.059-0.093] unit increase	Affymetrix [9000000] (imputed)	N
1623	chr9	136058187	136058188	rs12216896	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9q34.2		rs12216896-?	NR	6E-9				NR [~ 8900000] (imputed)	N
1623	chr9	136061539	136061540	rs146984623	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CEL	5,360 Icelandic ancestry individuals	NA	9q34.2		rs146984623-A	0.01529	3E-115		1.70787	[1.56-1.85] unit increase	Illumina [7506463] (imputed)	N
1623	chr9	136061539	136061540	rs146984623	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q34.2	NR	rs146984623-A	0.007	5E-19	(Bile salt-activated lipase, CEL.9796.4.3)	1.47	[1.16-1.78] unit increase	Affymetrix [10572788] (imputed)	N
1623	chr9	136075548	136075549	rs11244030	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	9q34.2	NR	rs11244030-T	NR	8E-33		0.0327	[0.027-0.038] unit increase	Affymetrix [9000000] (imputed)	N
1623	chr9	136081318	136081319	rs11244035	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	9q34.2	NR	rs11244035-T	NR	7E-32		0.0461	[0.038-0.054] unit increase	Affymetrix [9000000] (imputed)	N
1623	chr9	136081318	136081319	rs11244035	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	9q34.2	NR	rs11244035-T	NR	3E-665		0.216	[0.21-0.22] unit decrease	Affymetrix [9000000] (imputed)	N
1623	chr9	136081318	136081319	rs11244035	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	9q34.2	NR	rs11244035-T	NR	9E-34		0.0476	[0.04-0.055] unit increase	Affymetrix [9000000] (imputed)	N
1623	chr9	136081318	136081319	rs11244035	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	9q34.2	NR	rs11244035-T	NR	3E-22		0.0389	[0.031-0.047] unit increase	Affymetrix [9000000] (imputed)	N
1623	chr9	136081318	136081319	rs11244035	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	9q34.2	NR	rs11244035-T	NR	1E-23		0.0393	[0.032-0.047] unit increase	Affymetrix [9000000] (imputed)	N
1623	chr9	136081318	136081319	rs11244035	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	9q34.2	NR	rs11244035-T	NR	9E-36		0.0491	[0.041-0.057] unit decrease	Affymetrix [9000000] (imputed)	N
1623	chr9	136081318	136081319	rs11244035	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	9q34.2	NR	rs11244035-T	NR	2E-17		0.0335	[0.026-0.041] unit decrease	Affymetrix [9000000] (imputed)	N
1623	chr9	136081318	136081319	rs11244035	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	9q34.2	NR	rs11244035-T	NR	4E-21		0.0371	[0.029-0.045] unit increase	Affymetrix [9000000] (imputed)	N
1623	chr9	136081886	136081887	rs139911703	25934476	de Vries PS	2015-05-01	Blood	Genetic variants in the ADAMTS13 and SUPT3H genes are associated with ADAMTS13 activity.	ADAMTS13 activity	3,423 European ancestry individuals	2,025 European ancestry individuals	9q34.2	OBP2B	rs139911703-A	0.011	4E-8	(Conditional on rs3118667)	11.6	unit decrease	Illumina [8237900] (imputed)	N
1623	chr9	136087046	136087047	rs4962104	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein OBP2B	5,368 Icelandic ancestry individuals	NA	9q34.2		rs4962104-T	0.1989	1E-70		0.355123	[0.32-0.39] unit decrease	Illumina [7506463] (imputed)	N
1623	chr9	136087046	136087047	rs4962104	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	9q34.2	NR	rs4962104-C	0.8078125	9E-40	(OBP2B, 5680_54_3)	0.35026547	[0.3-0.4] unit increase	Illumina [> 1000000] (imputed)	N
1623	chr9	136087046	136087047	rs4962104	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	9q34.2	NR	rs4962104-C	0.8078125	9E-32	(ROBO4, 9232_1_3)	0.34005472	[0.28-0.4] unit decrease	Illumina [> 1000000] (imputed)	N
1623	chr9	136087046	136087047	rs4962104	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	9q34.2	NR	rs4962104-C	0.8078125	8E-12	(IL3RA, 13744_37_3)	0.1976663	[0.14-0.25] unit decrease	Illumina [> 1000000] (imputed)	N
1623	chr9	136087046	136087047	rs4962104	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	9q34.2	NR	rs4962104-C	0.8078125	6E-16	(CDH5, 2819_23_2)	0.24208172	[0.18-0.3] unit decrease	Illumina [> 1000000] (imputed)	N
1623	chr9	136087046	136087047	rs4962104	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	9q34.2	NR	rs4962104-C	0.8078125	6E-10	(CD36, 2973_15_2)	0.18145807	[0.12-0.24] unit decrease	Illumina [> 1000000] (imputed)	N
1623	chr9	136087046	136087047	rs4962104	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	9q34.2	NR	rs4962104-C	0.8078125	3E-9	(TEK, 3773_15_4)	0.18167466	[0.12-0.24] unit decrease	Illumina [> 1000000] (imputed)	N
1623	chr9	136087046	136087047	rs4962104	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	9q34.2	NR	rs4962104-C	0.8078125	2E-11	(TIE1, 2844_53_2)	0.20341657	[0.14-0.26] unit decrease	Illumina [> 1000000] (imputed)	N
1623	chr9	136087046	136087047	rs4962104	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	9q34.2	NR	rs4962104-C	0.8078125	1E-12	(ADGRF5, 6409_57_3)	0.22311652	[0.16-0.28] unit decrease	Illumina [> 1000000] (imputed)	N
1623	chr9	136087046	136087047	rs4962104	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q34.2	NR	rs4962104-C	0.786	5E-33	(Odorant-binding protein 2b, OBP2B.5680.54.3)	0.36	[0.3-0.42] unit increase	Affymetrix [10572788] (imputed)	N
1623	chr9	136089528	136089529	rs4454354	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q34.2	OBP2B	rs4454354-C	0.786	3E-33	(Odorant-binding protein 2b, OBP2B.5680.54.3)	0.36	[0.3-0.42] unit increase	Affymetrix [10572788] (imputed)	N
1623	chr9	136106973	136106974	rs71503180	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	9q34.2	NR	rs71503180-A	NR	9E-84		0.0839	[0.075-0.092] unit increase	Affymetrix [9000000] (imputed)	N
1623	chr9	136113999	136114000	rs78490142	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	Factor VIII levels	25,897 European ancestry individuals, 4,500 African American individuals, 773 Asian ancestry individuals, 1,440 Hispanic individuals	NA	9q34.2	ABO	rs78490142-?	NR	1E-13	(conditional)			Affymetrix, Illumina [13887196] (imputed)	N
1623	chr9	136115175	136115176	rs7470777	32492067	Ruffieux H	2020-06-03	PLoS Comput Biol	A fully joint Bayesian quantitative trait locus mapping of human protein abundance in plasma.	Protein quantitative trait loci	394 European ancestry individuals	548 European ancestry individuals	9q34.2	NR	rs7470777-?	NR	2E-14	(sTie-1)			Illumina [~ 4000000] (imputed)	N
1623	chr9	136116661	136116662	rs11793768	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	Factor VIII levels	25,897 European ancestry individuals, 4,500 African American individuals, 773 Asian ancestry individuals, 1,440 Hispanic individuals	NA	9q34.2	ABO	rs11793768-?	NR	4E-13	(EA)			Affymetrix, Illumina [13887196] (imputed)	N
1623	chr9	136116661	136116662	rs11793768	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	Factor VIII levels	25,897 European ancestry individuals, 4,500 African American individuals, 773 Asian ancestry individuals, 1,440 Hispanic individuals	NA	9q34.2	ABO	rs11793768-?	NR	2E-13				Affymetrix, Illumina [13887196] (imputed)	N
1623	chr9	136119526	136119527	rs9919007	34202464	Wang M	2021-06-24	Genes (Basel)	Genomic Association vs. Serological Determination of ABO Blood Types in a Chinese Cohort, with Application in Mendelian Randomization.	ABO blood group (A vs O)	up to 322 Han Chinese ancestry individuals with A blood group, up to 356 Han Chinese ancestry individuals with A blood group	NA	9q34.2	OBP2B, ABO	rs9919007-C	0.32	1E-54		182.6	[NR]	Affymetrix [733907]	N
1623	chr9	136121625	136121626	rs10901250	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	9q34.2	RP11-430N14.4, ABO	rs10901250-A	0.122339	2E-31		0.040504023	[0.034-0.047] unit increase	Affymetrix [93095623] (imputed)	N
1623	chr9	136123091	136123092	rs11244049	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	9q34.2		rs11244049-T	0.938	5E-19				Affymetrix [10369434] (imputed)	N
1623	chr9	136123239	136123258	rs140032935	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q34.2	NR	rs140032935-G	0.05	5E-39	(Histo-blood group ABO system transferase, ABO.9253.52.3)	0.85	[0.71-0.99] unit increase	Affymetrix [10572788] (imputed)	N
1623	chr9	136125608	136125609	rs75949790	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	9q34.2	NR	rs75949790-?	NR	4E-12		15744.726	NR unit decrease	Illumina [2379855]	N
1623	chr9	136126498	136126499	rs76700116	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	150,266 East Asian ancestry individuals	NA	9q34.2		rs76700116-C	0.253586	1E-8		0.0187397	[0.012-0.025] unit decrease	Illumina [13478778] (imputed)	N
1623	chr9	136126635	136126636	rs7849280	30281874	Tanikawa C	2018-10-03	Cancer Sci	A GWAS identifies gastric cancer susceptibility loci at 12q24.11-12 and 20q11.21.	Gastric cancer	6,171 Japanese ancestry cases, 27,178 Japanese ancestry controls	5,336 Japanese ancestry cases, 11,726 Japanese ancestry controls	9q34.2	NR	rs7849280-G	NR	3E-13		1.148		Illumina [6573681] (imputed)	N
1623	chr9	136127365	136127366	rs12216891	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Intraocular pressure	133,492 European ancestry individuals	NA	9q34.2	ABO	rs12216891-C	0.94	2E-9				Affymetrix, Illumina [8002429] (imputed)	N
1623	chr9	136127365	136127366	rs12216891	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Red blood cell count	108,794 Japanese ancestry individuals	NA	9q34.2	NR	rs12216891-?	NR	5E-37		0.07354	[0.062-0.085] unit increase novel	Illumina [6108953] (imputed)	N
1623	chr9	136127480	136127481	rs13291798	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	9q34.2	ABO	rs13291798-A	0.927077	3E-272		0.0153005	[0.014-0.016] unit increase	Affymetrix [13995440] (imputed)	N
1623	chr9	136127480	136127481	rs13291798	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	9q34.2	RP11-430N14.4, ABO	rs13291798-G	0.072916	1E-10		0.0311637	[0.023-0.039] unit increase	Affymetrix [93095623] (imputed)	N
1623	chr9	136127480	136127481	rs13291798	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	9q34.2	RP11-430N14.4, ABO	rs13291798-G	0.072911	4E-11		0.028305545	[0.02-0.037] unit increase	Affymetrix [93095623] (imputed)	N
1623	chr9	136127999	136128000	rs10901252	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	9q34.2		rs10901252-G	0.94	3E-55		0.36	[0.32-0.41] % increase	Affymetrix [NR] (imputed)	N
1623	chr9	136127999	136128000	rs10901252	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	9q34.2	RP11-430N14.4, ABO	rs10901252-C	0.062654	1E-83		0.0891005	[0.081-0.097] unit decrease	Affymetrix [93095623] (imputed)	N
1623	chr9	136127999	136128000	rs10901252	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	9q34.2	RP11-430N14.4, ABO	rs10901252-C	0.062648	2E-31		0.05345442	[0.044-0.062] unit decrease	Affymetrix [93095623] (imputed)	N
1623	chr9	136127999	136128000	rs10901252	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red blood cell traits (multivariate analysis)	29,513 European ancestry individuals	NA	9q34.2	NR	rs10901252-?	0.92	5E-6				Affymetrix, Illumina [21000000] (imputed)	N
1623	chr9	136127999	136128000	rs10901252	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red blood cell count	8,679 African American individuals, 17,412 Hispanic or Latin American individuals, 14,690 European ancestry individuals, 127 Asian ancestry individuals, 20 Native American ancestry individuals, 382 individuals	NA	9q34.2		rs10901252-?	0.898	1E-9		0.0314	[0.021-0.042] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
1623	chr9	136127999	136128000	rs10901252	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular volume	8,556 African American individuals, 17,141 Hispanic or Latin American individuals, 14,483 European ancestry individuals, 125 Asian ancestry individuals, 594 Native American ancestry individuals, 377 individuals	NA	9q34.2		rs10901252-?	0.898	5E-8		0.3696	[0.24-0.5] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
1623	chr9	136127999	136128000	rs10901252	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular volume	14,483 European ancestry individuals	NA	9q34.2		rs10901252-?	0.9197	8E-6		0.4412	[0.25-0.63] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
1623	chr9	136127999	136128000	rs10901252	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Hemoglobin concentration	16,186 African American individuals, 20,692 Hispanic or Latin American individuals, 29,379 European ancestry individuals, 630 Asian ancestry individuals, 601 Native American ancestry individuals, 381 individuals	NA	9q34.2		rs10901252-?	0.898	2E-6		0.0482	[0.028-0.068] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
1623	chr9	136127999	136128000	rs10901252	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Hemoglobin concentration	16,186 African American individuals	NA	9q34.2		rs10901252-?	0.84	9E-6		0.074	[0.041-0.107] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
1623	chr9	136127999	136128000	rs10901252	31666285	Olafsson S	2019-10-30	Cancer Epidemiol Biomarkers Prev	Common and rare sequence variants influencing tumor biomarkers in blood.	Serum carcinoembryonic antigen levels	22,309 Icelandic ancestry individuals	NA	9q34.2	ABO	rs10901252-C	0.065	9E-8		0.12	[0.07-0.16] unit increase	Illumina [NR] (imputed)	N
1623	chr9	136127999	136128000	rs10901252	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	9q34.2	ABO	rs10901252-?	NR	3E-351				Affymetrix, Illumina [10537485] (imputed)	N
1623	chr9	136127999	136128000	rs10901252	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	9q34.2	ABO	rs10901252-?	NR	2E-291	(EA)			Affymetrix, Illumina [10537485] (imputed)	N
1623	chr9	136127999	136128000	rs10901252	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	9q34.2	NR	rs10901252-?	NR	2E-14	(TIE2)	0.670788	[0.5-0.84] unit increase	Illumina [11901634] (imputed)	N
1623	chr9	136127999	136128000	rs10901252	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	9q34.2	RP11-430N14.4, ABO	rs10901252-C	0.0645	2E-25		0.07602222	[0.062-0.09] unit increase	Affymetrix [~ 2500000] (imputed)	N
1623	chr9	136127999	136128000	rs10901252	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	9q34.2	RP11-430N14.4, ABO	rs10901252-C	0.0645	8E-15		0.0564596	[0.042-0.071] unit increase	Affymetrix [~ 2500000] (imputed)	N
1623	chr9	136128545	136128546	rs7857390	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	9q34.2	ABO	rs7857390-?	NR	2E-393				Affymetrix, Illumina [10537485] (imputed)	N
1623	chr9	136128545	136128546	rs7857390	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	9q34.2	ABO	rs7857390-?	NR	1E-320	(EA)			Affymetrix, Illumina [10537485] (imputed)	N
1623	chr9	136128545	136128546	rs7857390	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	9q34.2	ABO	rs7857390-A	0.3845382	6E-11	(Tyrosine-protein kinase receptor Tie-1, soluble)	0.2949	[0.21-0.38] unit decrease	Affymetrix [509946]	N
1623	chr9	136129114	136129115	rs10793962	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	9q34.2		rs10793962-T	NR	3E-104		0.0743	[0.068-0.081] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
1623	chr9	136129114	136129115	rs10793962	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	9q34.2		rs10793962-T	NR	8E-46		0.0488	[0.042-0.055] unit increase	Affymetrix, Illumina [20536605] (imputed)	N
1623	chr9	136129114	136129115	rs10793962	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	9q34.2	NR	rs10793962-A	0.934868	1E-109		0.085035	[0.078-0.093] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
1623	chr9	136129114	136129115	rs10793962	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q34.2	NR	rs10793962-T	0.067	9E-41	(Immunoglobulin superfamily containing leucine-rich repeat protein 2, ISLR2.13124.20.3)	0.65	[0.55-0.75] unit increase	Affymetrix [10572788] (imputed)	N
1623	chr9	136129114	136129115	rs10793962	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	9q34.2	ABO	rs10793962-A	0.94	2E-12		0.183	[0.13-0.23] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1623	chr9	136129114	136129115	rs10793962	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	9q34.2	OBP2B, ABO	rs10793962-A	0.9382	1E-9		0.176	[0.12-0.23] unit decrease	Affymetrix [~ 11900000] (imputed)	N
1623	chr9	136129646	136129647	rs8176759	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q34.2	NR	rs8176759-G	0.929548	1E-111				Affymetrix, Illumina [22063850] (imputed)	N
1623	chr9	136129646	136129647	rs8176759	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q34.2	NR	rs8176759-A	0.0898836	2E-52				Affymetrix, Illumina [20825802] (imputed)	N
1623	chr9	136129646	136129647	rs8176759	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	9q34.2	RP11-430N14.4, ABO	rs8176759-A	0.0645	2E-10		0.04763889	[0.033-0.062] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1623	chr9	136129646	136129647	rs8176759	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	9q34.2	RP11-430N14.4, ABO	rs8176759-A	0.0647	4E-14		0.05503941	[0.041-0.069] unit increase	Affymetrix [~ 2500000] (imputed)	N
1623	chr9	136130676	136130677	rs62641786	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	9q34.2	ABO	rs62641786-?	NR	3E-96	(EA)			Affymetrix, Illumina [10537485] (imputed)	N
1623	chr9	136130676	136130677	rs62641786	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	9q34.2	ABO	rs62641786-?	NR	3E-106				Affymetrix, Illumina [10537485] (imputed)	N
1623	chr9	136130740	136130741	rs187099314	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q34.2	NR	rs187099314-T	0.0885171	4E-186				Affymetrix, Illumina [24246363] (imputed)	N
1623	chr9	136130740	136130741	rs187099314	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	9q34.2	NR	rs187099314-T	0.065532	1E-144		0.0944	[0.087-0.102] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1623	chr9	136130740	136130741	rs187099314	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q34.2	NR	rs187099314-T	0.0902667	3E-68				Affymetrix, Illumina [21126107] (imputed)	N
1623	chr9	136130740	136130741	rs187099314	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	9q34.2	NR	rs187099314-T	0.064385	3E-41		0.055035	[0.047-0.063] SD unit increase	Affymetrix, Illumina [50282193] (imputed)	N
1623	chr9	136130740	136130741	rs187099314	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	9q34.2		rs187099314-?	NR	7E-39				NR [~ 8900000] (imputed)	N
1623	chr9	136130855	136130859	rs149037075	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q34.2	NR	rs149037075-T	0.066	7E-66	(Interleukin-3 receptor subunit alpha, IL3RA.13744.37.3)	0.83	[0.73-0.93] unit increase	Affymetrix [10572788] (imputed)	N
1623	chr9	136130855	136130859	rs149037075	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q34.2	NR	rs149037075-T	0.066	3E-56	(Adhesion G protein-coupled receptor F5, ADGRF5.6409.57.3)	0.77	[0.67-0.87] unit increase	Affymetrix [10572788] (imputed)	N
1623	chr9	136130855	136130859	rs149037075	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	9q34.2	RP11-430N14.4, ABO	rs149037075-T	0.063	3E-51		0.1105021	[0.096-0.125] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1623	chr9	136130855	136130859	rs149037075	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	9q34.2	RP11-430N14.4, ABO	rs149037075-T	0.0629	3E-20		0.06772414	[0.053-0.082] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1623	chr9	136131021	136131022	rs8176751	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	9q34.2		rs8176751-T	0.174926	3E-50		0.0703669	[0.061-0.08] unit decrease	Illumina [13476266] (imputed)	N
1623	chr9	136131021	136131022	rs8176751	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	135,482 East Asian ancestry individuals	NA	9q34.2		rs8176751-T	0.175105	5E-34		0.0576841	[0.048-0.067] unit increase	Illumina [13477028] (imputed)	N
1623	chr9	136131056	136131057	rs56392308	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	9q34.2	NR	rs56392308-C	NR	8E-195		0.1481	[0.14-0.16] unit decrease	Affymetrix [9000000] (imputed)	N
1623	chr9	136131056	136131057	rs56392308	31666285	Olafsson S	2019-10-30	Cancer Epidemiol Biomarkers Prev	Common and rare sequence variants influencing tumor biomarkers in blood.	Serum alkaline phosphatase levels	162,774 Icelandic ancestry individuals	NA	9q34.2	ABO	rs56392308-C	0.065	1E-21		0.1	[0.08-0.12] unit increase	Illumina [NR] (imputed)	N
1623	chr9	136131187	136131188	rs8176749	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls	NA		ABO	rs8176749-T	NR	7E-7		1.13451	[1.08-1.18]	Illumina [11610548] (imputed)	N
1623	chr9	136131187	136131188	rs8176749	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	23,963 European ancestry cases, 306,942 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	43,254 European ancestry cases, 1,471,118 European ancestry controls		ABO	rs8176749-T	NR	2E-8		0.0739	unit increase	Illumina [15409056] (imputed)	N
1623	chr9	136131187	136131188	rs8176749	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA		ABO	rs8176749-T	0.062627	6E-85		0.089723095	[0.081-0.099] unit increase	Affymetrix [93095623] (imputed)	N
1623	chr9	136131187	136131188	rs8176749	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA		ABO	rs8176749-T	0.062609	7E-26		0.04927714	[0.04-0.058] unit decrease	Affymetrix [93095623] (imputed)	N
1623	chr9	136131187	136131188	rs8176749	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA		ABO	rs8176749-T	0.0626370000000001	7E-63		0.10019643	[0.088-0.112] unit increase	Affymetrix [93095623] (imputed)	N
1623	chr9	136131187	136131188	rs8176749	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 799 African American cases, 157,769 European ancestry controls, 14,353 African American controls	NA		ABO	rs8176749-T	NR	2E-30		1.23	[1.19-1.28]	Affymetrix, Illumina [12923718] (imputed)	N
1623	chr9	136131187	136131188	rs8176749	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin concentration	108,728 Japanese ancestry individuals	NA		ABO	rs8176749-?	NR	2E-23		0.05597	[0.045-0.067] unit increase novel	Illumina [6108953] (imputed)	N
1623	chr9	136131187	136131188	rs8176749	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals		ABO, Y_RNA, LCN1P2	rs8176749-T	0.08693467	8E-11	(EA, Vascular endothelial growth factor receptor 3)	0.4921	[0.35-0.64] unit increase	Affymetrix [509946]	N
1623	chr9	136131187	136131188	rs8176749	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals		ABO, Y_RNA, LCN1P2	rs8176749-T	0.08693467	8E-11	(EA, Interleukin-27 receptor subunit alpha)	0.4916	[0.34-0.64] unit increase	Affymetrix [509946]	N
1623	chr9	136131187	136131188	rs8176749	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals		ABO, Y_RNA, LCN1P2	rs8176749-T	0.08693467	6E-53	(Cadherin-5)	1.108	[0.97-1.24] unit increase	Affymetrix [509946]	N
1623	chr9	136131187	136131188	rs8176749	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals		ABO, Y_RNA, LCN1P2	rs8176749-T	0.08693467	6E-17	(EA, Endoglin)	0.6285	[0.48-0.77] unit increase	Affymetrix [509946]	N
1623	chr9	136131187	136131188	rs8176749	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals		ABO, Y_RNA, LCN1P2	rs8176749-T	0.08693467	6E-10	(Neurogenic locus notch homolog protein 1)	0.4484	[0.31-0.59] unit increase	Affymetrix [509946]	N
1623	chr9	136131187	136131188	rs8176749	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals		ABO, Y_RNA, LCN1P2	rs8176749-T	0.08693467	2E-51	(Tyrosine-protein kinase receptor Tie-1, soluble)	1.099	[0.96-1.23] unit increase	Affymetrix [509946]	N
1623	chr9	136131187	136131188	rs8176749	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals		ABO, Y_RNA, LCN1P2	rs8176749-T	0.08693467	2E-11	(EA, CD109 antigen)	0.5088	[0.36-0.66] unit increase	Affymetrix [509946]	N
1623	chr9	136131187	136131188	rs8176749	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals		ABO, Y_RNA, LCN1P2	rs8176749-T	0.08693467	2E-11	(EA, Basal Cell Adhesion Molecule)	0.5058	[0.36-0.65] unit increase	Affymetrix [509946]	N
1623	chr9	136131187	136131188	rs8176749	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals		ABO, Y_RNA, LCN1P2	rs8176749-T	0.08693467	1E-35	(Angiopoietin-1 receptor, soluble)	0.9056	[0.77-1.04] unit increase	Affymetrix [509946]	N
1623	chr9	136131187	136131188	rs8176749	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular volume	up to 29,946 European ancestry individuals, up to 6150 African American individuals, 15,074 East Asian individuals.	16,389 individuals of European and African American ancestry.		ABO	rs8176749-T	NR	5E-7	(Asian)	0.0039	[0.0023-0.0055] unit decrease	NR [2500000] (imputed)	N
1623	chr9	136131187	136131188	rs8176749	24586186	Rueedi R	2014-02-20	PLoS Genet	Genome-wide association study of metabolic traits reveals novel gene-metabolite-disease links.	Urinary metabolites (H-NMR features)	835 European ancestry individuals	601 Brazilian individuals		ABO	rs8176749-C	0.07	4E-12	(5.2625, Unknown)	0.48	[NR] unit increase	Illumina [713870] (imputed)	N
1623	chr9	136131187	136131188	rs8176749	23300138	He M	2013-01-07	Gut	A genome wide association study of genetic loci that influence tumour biomarkers cancer antigen 19-9, carcinoembryonic antigen and ? fetoprotein and their associations with cancer risk.	Tumor biomarkers	3,451 Han Chinese ancestry individuals	10,326 Chinese ancestry individuals		ABO	rs8176749-T	0.18	7E-105	(CEA)	0.205	[0.18-0.23] ng/ml increase	Affymetrix, Illumina [NR] (imputed)	N
1623	chr9	136131314	136131315	rs8176747	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Intraocular pressure	133,492 European ancestry individuals	NA	9q34.2	ABO	rs8176747-?	NR	5E-10		0.1625	[0.11-0.21] unit decrease	Affymetrix, Illumina [up to 40000000] (imputed)	N
1623	chr9	136131314	136131315	rs8176747	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q34.2	ABO	rs8176747-G	0.067	9E-12	(Basal Cell Adhesion Molecule, BCAM.2816.50.2)	0.34	[0.24-0.44] unit increase	Affymetrix [10572788] (imputed)	N
1623	chr9	136131314	136131315	rs8176747	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q34.2	ABO	rs8176747-G	0.067	2E-26	(Tolloid-like protein 1, TLL1.6383.90.3)	0.52	[0.42-0.62] unit increase	Affymetrix [10572788] (imputed)	N
1623	chr9	136131314	136131315	rs8176747	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	9q34.2	ABO	rs8176747-G	0.0629	1E-9		0.04515556	[0.031-0.06] unit increase	Affymetrix [~ 2500000] (imputed)	N
1623	chr9	136131314	136131315	rs8176747	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	9q34.2	ABO	rs8176747-G	0.0628	4E-13		0.0545946	[0.04-0.069] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1623	chr9	136131315	136131316	rs41302905	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9q34.2	NR	rs41302905-T	0.0122	3E-8	(KATNAL2)	0.05071	NR unit increase	Illumina [1671387] (imputed)	N
1623	chr9	136131321	136131322	rs8176746	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	9q34.2	NR	rs8176746-T	NR	2E-10		0.0302	[0.021-0.04] unit decrease	Affymetrix [9000000] (imputed)	N
1623	chr9	136131321	136131322	rs8176746	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	9q34.2	NR	rs8176746-T	NR	1E-9		0.0306	[0.021-0.04] unit increase	Affymetrix [9000000] (imputed)	N
1623	chr9	136131321	136131322	rs8176746	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	9q34.2	NR	rs8176746-T	NR	1E-27		0.0521	[0.043-0.062] unit increase	Affymetrix [9000000] (imputed)	N
1623	chr9	136131321	136131322	rs8176746	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	9q34.2	NR	rs8176746-T	NR	2E-9		0.03	[0.02-0.04] unit increase	Affymetrix [9000000] (imputed)	N
1623	chr9	136131321	136131322	rs8176746	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	9q34.2	NR	rs8176746-T	NR	6E-15		0.0373	[0.028-0.047] unit decrease	Affymetrix [9000000] (imputed)	N
1623	chr9	136131321	136131322	rs8176746	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	9q34.2	NR	rs8176746-T	NR	6E-16		0.0396	[0.03-0.049] unit decrease	Affymetrix [9000000] (imputed)	N
1623	chr9	136131321	136131322	rs8176746	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	9q34.2	NR	rs8176746-T	NR	2E-20		0.0444	[0.035-0.054] unit decrease	Affymetrix [9000000] (imputed)	N
1623	chr9	136131321	136131322	rs8176746	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	9q34.2	NR	rs8176746-T	NR	2E-19		0.0432	[0.034-0.053] unit decrease	Affymetrix [9000000] (imputed)	N
1623	chr9	136131321	136131322	rs8176746	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	9q34.2	NR	rs8176746-T	NR	3E-14		0.0362	[0.027-0.046] unit increase	Affymetrix [9000000] (imputed)	N
1623	chr9	136131321	136131322	rs8176746	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	9q34.2	ABO	rs8176746-T	0.062741	2E-33		0.055692565	[0.047-0.065] unit decrease	Affymetrix [93095623] (imputed)	N
1623	chr9	136131321	136131322	rs8176746	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	9q34.2	ABO	rs8176746-T	0.062735	3E-38		0.05962264	[0.051-0.069] unit decrease	Affymetrix [93095623] (imputed)	N
1623	chr9	136131321	136131322	rs8176746	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	126,151 East Asian ancestry individuals	NA	9q34.2	NR	rs8176746-G	0.825763	2E-30		0.059945	[0.05-0.07] SD units decrease	Affymetrix, Illumina [16289083] (imputed)	N
1623	chr9	136131321	136131322	rs8176746	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	9q34.2		rs8176746-?	NR	2E-94				NR [~ 8900000] (imputed)	N
1623	chr9	136131321	136131322	rs8176746	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q34.2	ABO	rs8176746-T	0.067	1E-153	(Cadherin-5, CDH5.2819.23.2)	1.19	[1.09-1.29] unit increase	Affymetrix [10572788] (imputed)	N
1623	chr9	136131321	136131322	rs8176746	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Hemoglobin	108,769 Japanese ancestry individuals	NA	9q34.2	NR	rs8176746-?	NR	2E-23		0.05532	[0.044-0.066] unit increase novel	Illumina [6108953] (imputed)	N
1623	chr9	136131321	136131322	rs8176746	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular volume	up to 29,946 European ancestry individuals, up to 6150 African American individuals, 15,074 East Asian individuals.	16,389 individuals of European and African American ancestry.	9q34.2	ABO	rs8176746-?	NR	1E-8				NR [2500000] (imputed)	N
1623	chr9	136131321	136131322	rs8176746	20139978	Kamatani Y	2010-02-07	Nat Genet	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Mean corpuscular hemoglobin concentration	14,377 Japanese ancestry individuals	NA	9q34.2	ABO	rs8176746-T	0.18	4E-8		0.084	[0.055-0.113] unit increase	Illumina [561583]	N
1623	chr9	136131414	136131415	rs8176743	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	9q34.2		rs8176743-T	NR	6E-33		0.0409	[0.034-0.048] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
1623	chr9	136131414	136131415	rs8176743	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	9q34.2		rs8176743-T	0.177641	7E-13		0.0340222	[0.025-0.043] unit decrease	Illumina [13476299] (imputed)	N
1623	chr9	136131414	136131415	rs8176743	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Angiopoietin-1 receptor levels	21,758 European ancestry individuals	9,173 individuals	9q34.2		rs8176743-T	0.097	5E-434		0.6811	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1623	chr9	136131414	136131415	rs8176743	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	9q34.2	ABO	rs8176743-T	0.062645	8E-68		0.080685556	[0.072-0.09] unit decrease	Affymetrix [93095623] (imputed)	N
1623	chr9	136131414	136131415	rs8176743	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	121,047 East Asian ancestry individuals	NA	9q34.2	NR	rs8176743-C	0.822489	1E-39		0.069848	[0.059-0.08] SD units increase	Affymetrix, Illumina [16286195] (imputed)	N
1623	chr9	136131414	136131415	rs8176743	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	119,629 East Asian ancestry individuals	NA	9q34.2	NR	rs8176743-C	0.822488	1E-10		0.034334	[0.024-0.045] SD units increase	Affymetrix, Illumina [16286228] (imputed)	N
1623	chr9	136131414	136131415	rs8176743	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q34.2	ABO	rs8176743-T	0.067	6E-21	(Semaphorin-6A, SEMA6A.7945.10.3)	0.46	[0.36-0.56] unit increase	Affymetrix [10572788] (imputed)	N
1623	chr9	136131414	136131415	rs8176743	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q34.2	ABO	rs8176743-T	0.067	4E-24	(Interleukin-27 receptor subunit alpha, IL27RA.5132.71.3)	0.49	[0.39-0.59] unit increase	Affymetrix [10572788] (imputed)	N
1623	chr9	136131414	136131415	rs8176743	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q34.2	ABO	rs8176743-T	0.067	4E-16	(Platelet endothelial aggregation receptor 1, PEAR1.8275.31.3)	0.4	[0.3-0.5] unit increase	Affymetrix [10572788] (imputed)	N
1623	chr9	136131414	136131415	rs8176743	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q34.2	ABO	rs8176743-T	0.067	4E-13	(Neurogenic locus notch homolog protein 1, NOTCH1.5107.7.2)	0.36	[0.26-0.46] unit increase	Affymetrix [10572788] (imputed)	N
1623	chr9	136131414	136131415	rs8176743	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q34.2	ABO	rs8176743-T	0.067	3E-132	(Tyrosine-protein kinase receptor Tie-1, soluble, TIE1.2844.53.2)	1.11	[1.01-1.21] unit increase	Affymetrix [10572788] (imputed)	N
1623	chr9	136131414	136131415	rs8176743	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular volume	108,256 Japanese ancestry individuals	NA	9q34.2	ABO	rs8176743-?	NR	9E-38		0.07104	[0.06-0.082] unit decrease novel	Illumina [6108953] (imputed)	N
1623	chr9	136131414	136131415	rs8176743	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin	108,054 Japanese ancestry individuals	NA	9q34.2	ABO	rs8176743-?	NR	5E-11		0.03641	[0.026-0.047] unit decrease novel	Illumina [6108953] (imputed)	N
1623	chr9	136131414	136131415	rs8176743	25173106	Hysi PG	2014-08-31	Nat Genet	Genome-wide analysis of multi-ancestry cohorts identifies new loci influencing intraocular pressure and susceptibility to glaucoma.	Intraocular pressure	7,738 Asian ancestry individuals, 27,558 European ancestry individuals	NA	9q34.2	ABO	rs8176743-T	NR	3E-11		0.261	[0.18-0.34] mm Hg increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1623	chr9	136131414	136131415	rs8176743	23381943	Williams FM	2013-01-01	Ann Neurol	Ischemic stroke is associated with the ABO locus: the EuroCLOT study.	End-stage coagulation	2,100 European ancestry individuals	NA	9q34.2	ABO	rs8176743-C	0.939	2E-17	(vWF)	0.582	[0.45-0.72] unit decrease	Illumina [NR] (imputed)	N
1623	chr9	136131460	136131461	rs8176741	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TLL1	5,356 Icelandic ancestry individuals	NA	9q34.2		rs8176741-A	0.06833	4E-20		0.341429	[0.27-0.41] unit increase	Illumina [7506463] (imputed)	N
1623	chr9	136131460	136131461	rs8176741	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TIE1	5,364 Icelandic ancestry individuals	NA	9q34.2		rs8176741-A	0.06833	7E-120		0.834803	[0.76-0.91] unit increase	Illumina [7506463] (imputed)	N
1623	chr9	136131460	136131461	rs8176741	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SEMA6B	5,360 Icelandic ancestry individuals	NA	9q34.2		rs8176741-A	0.06833	8E-40		0.468976	[0.4-0.54] unit increase	Illumina [7506463] (imputed)	N
1623	chr9	136131460	136131461	rs8176741	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ROBO4	5,359 Icelandic ancestry individuals	NA	9q34.2		rs8176741-A	0.06833	2E-161		0.916622	[0.85-0.98] unit increase	Illumina [7506463] (imputed)	N
1623	chr9	136131460	136131461	rs8176741	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL3RA	5,365 Icelandic ancestry individuals	NA	9q34.2		rs8176741-A	0.06833	1E-52		0.537894	[0.47-0.61] unit increase	Illumina [7506463] (imputed)	N
1623	chr9	136131460	136131461	rs8176741	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein EPHA4	5,365 Icelandic ancestry individuals	NA	9q34.2		rs8176741-A	0.06833	5E-23		0.357921	[0.29-0.43] unit increase	Illumina [7506463] (imputed)	N
1623	chr9	136131460	136131461	rs8176741	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CDH5	5,365 Icelandic ancestry individuals	NA	9q34.2		rs8176741-A	0.06833	2E-132		0.857914	[0.79-0.93] unit increase	Illumina [7506463] (imputed)	N
1623	chr9	136131460	136131461	rs8176741	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ADGRF5	5,349 Icelandic ancestry individuals	NA	9q34.2		rs8176741-A	0.06833	1E-52		0.549487	[0.48-0.62] unit increase	Illumina [7506463] (imputed)	N
1623	chr9	136131460	136131461	rs8176741	32492067	Ruffieux H	2020-06-03	PLoS Comput Biol	A fully joint Bayesian quantitative trait locus mapping of human protein abundance in plasma.	Protein quantitative trait loci	394 European ancestry individuals	548 European ancestry individuals	9q34.2	NR	rs8176741-?	NR	4E-30	(Cadherin-5)			Illumina [~ 4000000] (imputed)	N
1623	chr9	136131460	136131461	rs8176741	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	9q34.2	NR	rs8176741-G	0.938152	2E-10		0.0163463	[0.011-0.021] unit increase	Affymetrix [16585854] (imputed)	N
1623	chr9	136131460	136131461	rs8176741	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	9q34.2	NR	rs8176741-G	0.938152	3E-7		0.0159487	[0.01-0.022] unit increase	Affymetrix [16585866] (imputed)	N
1623	chr9	136131460	136131461	rs8176741	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	9q34.2	ABO	rs8176741-G	0.9397	2E-10		0.188	[0.13-0.25] unit decrease	Affymetrix [~ 11900000] (imputed)	N
1623	chr9	136131460	136131461	rs8176741	28369058	Folkersen L	2017-04-03	PLoS Genet	Mapping of 79 loci for 83 plasma protein biomarkers in cardiovascular disease.	Blood protein levels in cardiovascular risk	3,394 European ancestry individuals	2,639 individuals	9q34.2	RALGDS	rs8176741-G	0.91	2E-78		0.61	unit decrease	Illumina [5270624] (imputed)	N
1623	chr9	136131460	136131461	rs8176741	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Intraocular pressure	25,916 European ancestry individuals, 1,073 Orcadian (founder/genetic isolate) individuals, 2,589 Erasmus Rucphen (founder/genetic isolate) individuals	8,352 Asian ancestry individuals	9q34.2	ABO	rs8176741-A	NR	3E-7	(EA)	0.26	[0.16-0.36] unit increase	Affymetrix, Illumina [~ 8000000] (imputed)	N
1623	chr9	136131460	136131461	rs8176741	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Intraocular pressure	25,916 European ancestry individuals, 1,073 Orcadian (founder/genetic isolate) individuals, 2,589 Erasmus Rucphen (founder/genetic isolate) individuals	8,352 Asian ancestry individuals	9q34.2	ABO	rs8176741-A	NR	3E-10		0.24	[0.16-0.32] unit increase	Affymetrix, Illumina [~ 8000000] (imputed)	N
1623	chr9	136131460	136131461	rs8176741	24941225	Liang Y	2014-06-18	PLoS One	Genetic variations affecting serum carcinoembryonic antigen levels and status of regional lymph nodes in patients with sporadic colorectal cancer from Southern China.	Elevated serum carcinoembryonic antigen levels	1,999 Chinese ancestry individuals	NA	9q34.2	ABO	rs8176741-?		2E-24				Illumina [709211] (imputed)	N
1623	chr9	136131575	136131576	rs55727303	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	9q34.2	NR	rs55727303-T	NR	4E-16		0.072	[0.055-0.089] unit increase	Affymetrix [9000000] (imputed)	N
1623	chr9	136131650	136131651	rs1053878	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CD209	5,368 Icelandic ancestry individuals	NA	9q34.2		rs1053878-A	0.06117	3E-21		0.37928	[0.3-0.46] unit increase	Illumina [7506463] (imputed)	N
1623	chr9	136132753	136132754	rs8176722	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	9q34.2		rs8176722-A	NR	2E-15		0.0264	[0.02-0.033] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
1623	chr9	136132753	136132754	rs8176722	23717212	Band G	2013-05-23	PLoS Genet	Imputation-based meta-analysis of severe malaria in three African populations.	Malaria	5,425 African ancestry cases, 6,891 African ancestry controls	NA	9q34.2	ABO	rs8176722-A	NR	9E-10		1.28	[1.19-1.39]	Illumina [1300000] (imputed)	N
1623	chr9	136132872	136132873	rs8176720	34202464	Wang M	2021-06-24	Genes (Basel)	Genomic Association vs. Serological Determination of ABO Blood Types in a Chinese Cohort, with Application in Mendelian Randomization.	ABO blood group (B vs non-B)	up to 253 Han Chinese ancestry individuals with B blood group, up to 755 Han Chinese ancestry individuals with non-B blood group	NA	9q34.2	ABO	rs8176720-T	0.439	5E-39		8.5	[NR]	Affymetrix [733907]	N
1623	chr9	136132872	136132873	rs8176720	34202464	Wang M	2021-06-24	Genes (Basel)	Genomic Association vs. Serological Determination of ABO Blood Types in a Chinese Cohort, with Application in Mendelian Randomization.	ABO blood group (A vs non-A)	up to 322 Han Chinese ancestry individuals with A blood group, up to 686 Han Chinese ancestry individuals with non-A blood group	NA	9q34.2	ABO	rs8176720-T	0.439	2E-40		0.1	[NR]	Affymetrix [733907]	N
1623	chr9	136132872	136132873	rs8176720	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	LDL cholesterol levels	up to 23,353 African ancestry individuals, 13,171 Asian ancestry individuals, up to 82,522 European ancestry individuals, 6,646 Hispanic individuals	NA	9q34.2		rs8176720-T	0.6185	2E-6		0.7615	[0.45-1.08] unit increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1623	chr9	136132872	136132873	rs8176720	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	9q34.2	ABO	rs8176720-C	0.3440321	7E-10	(Insulin receptor)	0.2796	[0.19-0.37] unit increase	Affymetrix [509946]	N
1623	chr9	136132872	136132873	rs8176720	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	9q34.2	ABO	rs8176720-C	0.3440321	6E-13	(EA, E-Selectin)	0.3128	[0.23-0.4] unit increase	Affymetrix [509946]	N
1623	chr9	136132872	136132873	rs8176720	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	9q34.2	ABO	rs8176720-C	0.3440321	6E-10	(EA, A disintegrin and metalloproteinase with thrombospondin motifs 13)	0.2767	[0.19-0.36] unit decrease	Affymetrix [509946]	N
1623	chr9	136132872	136132873	rs8176720	24094242	Li J	2013-10-05	BMC Genomics	Genome-wide association study on serum alkaline phosphatase levels in a Chinese population.	Serum alkaline phosphatase levels	1,452 Han Chinese ancestry individuals	8,830 Han Chinese ancestry individuals	9q34.2	ABO	rs8176720-C	0.452	3E-21		0.041	[0.033-0.049] U/L increase	Affymetrix [658288]	N
1623	chr9	136132908	136132908	rs8176719	34757267	Teng MS	2021-10-15	Atherosclerosis	Genome-wide association study revealed novel candidate gene loci associated with soluble E-selectin levels in a Taiwanese population.	Soluble E-selectin levels (adjusted for ABO rs2519093 genotypes)	4,525 East Asian ancestry individuals	NA	9q34.2		rs8176719-?	NR	2E-7				Affymetrix [7338548] (imputed)	N
1623	chr9	136132908	136132908	rs8176719	34202464	Wang M	2021-06-24	Genes (Basel)	Genomic Association vs. Serological Determination of ABO Blood Types in a Chinese Cohort, with Application in Mendelian Randomization.	ABO blood group (AB vs O)	up to 77 Han Chinese ancestry individuals with AB blood group, up to 356 individuals with O blood group	NA	9q34.2	ABO	rs8176719-T	0.406	2E-58		1.40000004E14	[NR]	Affymetrix [733907]	N
1623	chr9	136132908	136132908	rs8176719	33949668	Ma Y	2021-05-05	Hum Mol Genet	Integrative Genomics Analysis Reveals a 21q22.11 Locus Contributing Risk to COVID-19.	COVID-19	3,288 European ancestry cases, 676,840 European ancestry controls	NA	9q34.2	ABO	rs8176719-?		5E-7		1.17	[1.10-1.25]	NR [8424883] (imputed)	N
1623	chr9	136132908	136132908	rs8176719	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	9q34.2	ABO, OBP2B, SURF6, MED22, RPL7A, SNORD24, SNORD36B, SNORD36A, SNORD36C, SURF1, SURF2, SURF4, STKLD1, REXO4, ADAMTS13	rs8176719-?		9E-21	(dominant)	0.305	[0.2-0.41] unit increase	Illumina [1492601] (imputed)	N
1623	chr9	136132908	136132908	rs8176719	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	9q34.2	ABO, OBP2B, SURF6, MED22, RPL7A, SNORD24, SNORD36B, SNORD36A, SNORD36C, SURF1, SURF2, SURF4, STKLD1, REXO4, ADAMTS13	rs8176719-?		9E-11	(heterogeneous)	0.211	[0.15-0.27] unit increase	Illumina [1492601] (imputed)	N
1623	chr9	136132908	136132908	rs8176719	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	9q34.2	ABO, OBP2B, SURF6, MED22, RPL7A, SNORD24, SNORD36B, SNORD36A, SNORD36C, SURF1, SURF2, SURF4, STKLD1, REXO4, ADAMTS13	rs8176719-?		1E-19	(additive)	0.223	[0.17-0.27] unit increase	Illumina [1492601] (imputed)	N
1623	chr9	136132908	136132908	rs8176719	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	9q34.2	ABO	rs8176719-?	0.65	1E-320	(EA)	0.172	[0.17-0.18] unit decrease	Affymetrix, Illumina [10537485] (imputed)	N
1623	chr9	136132908	136132908	rs8176719	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	Factor VIII levels	25,897 European ancestry individuals, 4,500 African American individuals, 773 Asian ancestry individuals, 1,440 Hispanic individuals	NA	9q34.2	ABO	rs8176719-?	0.63	4E-403		0.1488	[0.14-0.16] unit decrease	Affymetrix, Illumina [13887196] (imputed)	N
1623	chr9	136132908	136132908	rs8176719	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	Factor VIII levels	25,897 European ancestry individuals, 4,500 African American individuals, 773 Asian ancestry individuals, 1,440 Hispanic individuals	NA	9q34.2	ABO	rs8176719-?	0.62	2E-307	(EA)	0.1442	[0.14-0.15] unit decrease	Affymetrix, Illumina [13887196] (imputed)	N
1623	chr9	136132908	136132908	rs8176719	22895189	Timmann C	2012-08-15	Nature	Genome-wide association study indicates two novel resistance loci for severe malaria.	Malaria	1,325 African ancestry, 828 African ancestry controls	2,229 African ancestry cases, 3,526 African ancestry controls	9q34.2	ABO	rs8176719-G	0.37	4E-21		1.48	[NR]	Affymetrix [4205739] (imputed)	N
1623	chr9	136132908	136132908	rs8176719	22672568	Heit JA	2012-06-05	J Thromb Haemost	A genome-wide association study of venous thromboembolism identifies risk variants in chromosomes 1q24.2 and 9q.	Venous thromboembolism	1,503 European and other ancestry cases, 1,459 European and other ancestry controls	1,407 cases, 1,418 controls	9q34.2	ABO	rs8176719-G	0.419	6E-12		1.47	[1.32-1.64]	Illumina [~ 2500000] (imputed)	N
1623	chr9	136132953	136132954	rs75179845	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TEK	5,362 Icelandic ancestry individuals	NA	9q34.2		rs75179845-C	0.06807	1E-50		0.556713	[0.48-0.63] unit increase	Illumina [7506463] (imputed)	N
1623	chr9	136132953	136132954	rs75179845	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting insulin	151,013 European ancestry individuals	NA	9q34.2	ABO	rs75179845-T	0.9064	6E-11		0.0216	[0.015-0.028] unit decrease	Affymetrix, Illumina [32635793] (imputed)	N
1623	chr9	136135551	136135552	rs8176704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ICAM2	5,358 Icelandic ancestry individuals	NA	9q34.2		rs8176704-A	0.06754	2E-6		0.177345	[0.1-0.25] unit decrease	Illumina [7506463] (imputed)	N
1623	chr9	136135551	136135552	rs8176704	26486471	van Loon J	2015-10-21	Eur J Hum Genet	Genome-wide association studies identify genetic loci for low von Willebrand factor levels.	Low vWF levels	up to 1,635 European ancestry individuals with low vWF levels, up to 33,286 European ancestry individuals with normal vWF levels	NA	9q34.2	ABO	rs8176704-?	NR	2E-64		2.83	[2.52-3.18]	Affymetrix, Illumina [~ 2600000] (imputed)	N
1623	chr9	136135551	136135552	rs8176704	23267103	Desch KC	2012-12-24	Proc Natl Acad Sci U S A	Linkage analysis identifies a locus for plasma von Willebrand factor undetected by genome-wide association.	Coagulation factor levels	3,250 European ancestry individuals, up to 212 individuals	NA	9q34.2	OBP2A, C9orf96, LOC286310, SURF6, LOC653163, SURF5, ADAMTS13, ABO, OBP2B	rs8176704-A	NR	4E-34	(Conditioned on rs687289)	0.34	[NR] lU/dL decrease	Illumina [723716]	N
1623	chr9	136136772	136136773	rs8176696	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	9q34.2	NR	rs8176696-T	NR	4E-23		0.0803	[0.064-0.096] unit increase	Affymetrix [9000000] (imputed)	N
1623	chr9	136137064	136137065	rs687621	35264221	Caron B	2022-03-09	Genome Med	Integrative genetic and immune cell analysis of plasma proteins in healthy donors identifies novel associations involving primary immune deficiency genes.	FAS plasma levels	400 French ancestry individuals	NA	9q34.2		rs687621-A	NR	2E-11		0.191	[0.14-0.25] ng/mL increase	Illumina [5201092] (imputed)	N
1623	chr9	136137064	136137065	rs687621	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycoprotein acetyls levels	115,082 European ancestry individuals	NA	9q34.2		rs687621-A	0.681106	9E-12		0.0298858	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
1623	chr9	136137064	136137065	rs687621	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LRRC32	5,360 Icelandic ancestry individuals	NA	9q34.2		rs687621-G	0.2578	1E-34		0.253997	[0.21-0.29] unit increase	Illumina [7506463] (imputed)	N
1623	chr9	136137064	136137065	rs687621	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein F8	5,364 Icelandic ancestry individuals	NA	9q34.2		rs687621-G	0.2578	1E-78		0.382969	[0.34-0.42] unit increase	Illumina [7506463] (imputed)	N
1623	chr9	136137064	136137065	rs687621	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CASC4	5,364 Icelandic ancestry individuals	NA	9q34.2		rs687621-G	0.2578	1E-36		0.270517	[0.23-0.31] unit increase	Illumina [7506463] (imputed)	N
1623	chr9	136137064	136137065	rs687621	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	95,119 East Asian ancestry individuals	NA	9q34.2		rs687621-G	0.463556	2E-8		0.0246108	[0.016-0.033] unit decrease	Illumina [13471440] (imputed)	N
1623	chr9	136137064	136137065	rs687621	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	9q34.2		rs687621-G	NR	9E-30		0.0223	[0.018-0.026] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
1623	chr9	136137064	136137065	rs687621	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	150,545 East Asian ancestry individuals	NA	9q34.2		rs687621-G	0.464127	2E-9		0.020404	[0.014-0.027] unit increase	Illumina [13478866] (imputed)	N
1623	chr9	136137064	136137065	rs687621	33608531	Wu Y	2021-02-19	Nat Commun	GWAS of peptic ulcer disease implicates Helicobacter pylori infection, other gastrointestinal disorders and depression.	Peptic ulcer disease	16,666 European ancestry cases, 439,661 European ancestry controls	NA	9q34.2	NR	rs687621-A	0.68	1E-9		1.08	NR	NR [8546065] (imputed)	N
1623	chr9	136137064	136137065	rs687621	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	9q34.2	ABO	rs687621-G	0.32	5E-25		10.3	z-score increase	Affymetrix [4312306] (imputed)	N
1623	chr9	136137064	136137065	rs687621	31262040	Pujol-Moix N	2019-06-30	Int J Mol Sci	Influence of ABO Locus on PFA-100 Collagen-ADP Closure Time Is Not Totally Dependent on the Von Willebrand Factor. Results of a GWAS on GAIT-2 Project Phenotypes.	Platelet reactivity measurement (collagen-ADP)	935 Spanish ancestry individuals	NA	9q34.2	ABO	rs687621-?	NR	2E-15				NR [10844567] (imputed)	N
1623	chr9	136137064	136137065	rs687621	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	Factor VIII levels	25,897 European ancestry individuals, 4,500 African American individuals, 773 Asian ancestry individuals, 1,440 Hispanic individuals	NA	9q34.2	ABO	rs687621-?	NR	7E-778				Affymetrix, Illumina [13887196] (imputed)	N
1623	chr9	136137064	136137065	rs687621	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	Factor VIII levels	25,897 European ancestry individuals, 4,500 African American individuals, 773 Asian ancestry individuals, 1,440 Hispanic individuals	NA	9q34.2	ABO	rs687621-?	NR	1E-647	(EA)			Affymetrix, Illumina [13887196] (imputed)	N
1623	chr9	136137064	136137065	rs687621	30395268	Khanshour AM	2018-11-01	Hum Mol Genet	Genome-wide meta-analysis and replication studies in multiple ethnicities identify novel adolescent idiopathic scoliosis susceptibility loci.	Adolescent idiopathic scoliosis	2,295 East Asian ancestry cases, 11,084 East Asian ancestry controls, 1,503 European ancestry cases, 18,594 European ancestry controls	2,737 East Asian ancestry cases, 56,815 East Asian ancestry controls, 1,421 European ancestry cases, 1,966 European ancestry controls	9q34.2	ABO	rs687621-?		7E-10		1.1235955	[1.08-1.16]	Affymetrix, Illumina [3493832] (imputed)	N
1623	chr9	136137064	136137065	rs687621	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	9q34.2	ABO	rs687621-G	0.324802051593313	1E-8		0.0433	[0.028-0.058] unit increase	NR [5035015] (imputed)	N
1623	chr9	136137064	136137065	rs687621	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q34.2	ABO	rs687621-G	0.314	4E-17	(Desmoglein-2, DSG2.9484.75.3)	0.22	[0.16-0.28] unit increase	Affymetrix [10572788] (imputed)	N
1623	chr9	136137064	136137065	rs687621	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q34.2	ABO	rs687621-G	0.314	1E-11	(Carbohydrate sulfotransferase 11, CHST11.7779.86.3)	0.18	[0.12-0.24] unit increase	Affymetrix [10572788] (imputed)	N
1623	chr9	136137064	136137065	rs687621	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Monocyte count	62,076 Japanese ancestry individuals	NA	9q34.2	ABO	rs687621-?	NR	2E-8		0.0318	[0.021-0.043] unit decrease novel	Illumina [6108953] (imputed)	N
1623	chr9	136137064	136137065	rs687621	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Diastolic blood pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	9q34.2	ABO	rs687621-A	0.6179	5E-8		0.152	mmHg increase	Illumina [242296]	N
1623	chr9	136137064	136137065	rs687621	23650146	Tang W	2013-05-05	Genet Epidemiol	A genome-wide association study for venous thromboembolism: the extended cohorts for heart and aging research in genomic epidemiology (CHARGE) consortium.	Venous thromboembolism	1,618 European ancestry cases, 42,881 European ancestry controls	3,231 European ancestry cases, 3,536 European ancestry controls	9q34.2	ABO	rs687621-G	0.65	2E-52		1.55	[1.47-1.64]	Affymetrix, Illumina [2543885] (imputed)	N
1623	chr9	136137064	136137065	rs687621	22703881	Tang W	2012-06-14	Am J Hum Genet	Genetic associations for activated partial thromboplastin time and prothrombin time, their gene expression profiles, and risk of coronary artery disease.	Activated partial thromboplastin time	9,240 European ancestry individuals	2611 European ancestry individuals	9q34.2	LOC653163, SURF2, SURF4, ADAMTS13, C9orf7, ABO	rs687621-A	NR	9E-100		0.817	[0.73-0.90] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1623	chr9	136137064	136137065	rs687621	21502573	Smith NL	2011-04-21	Circulation	Genetic predictors of fibrin D-dimer levels in healthy adults.	D-dimer levels	21,052 European ancestry individuals	NA	9q34.2	ABO	rs687621-G	0.317	7E-6		0.0284	[NR] % increase	Affymetrix, Illumina [2522393] (imputed)	N
1623	chr9	136137064	136137065	rs687621	20231535	Smith NL	2010-03-15	Circulation	Novel associations of multiple genetic loci with plasma levels of factor VII, factor VIII, and von Willebrand factor: The CHARGE (Cohorts for Heart and Aging Research in Genome Epidemiology) Consortium.	vWF levels	17,596 European ancestry individuals	Up to 7,604 European ancestry individuals	9q34.2	ABO	rs687621-?	NR	5E-324		24.1	[21.4-26.8] unit increase	Affymetrix, Illumina [2742821] (imputed)	N
1623	chr9	136137105	136137106	rs687289	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	9q34.2		rs687289-G	0.682	5E-37				Affymetrix [10369434] (imputed)	N
1623	chr9	136137105	136137106	rs687289	33592630	Herrera-Rivero M	2021-02-16	Thromb Haemost	Single- and Multimarker Genome-Wide Scans Evidence Novel Genetic Risk Modifiers for Venous Thromboembolism.	Venous thromboembolism	964 European ancestry cases, 899 European ancestry controls	NA	9q34.2	ABO	rs687289-T	NR	9E-16		1.821	[1.573-2.108]	Illumina [484621]	N
1623	chr9	136137105	136137106	rs687289	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Fibroblast growth factor 23 levels	21,758 European ancestry individuals	9,173 individuals	9q34.2		rs687289-A	0.37	1E-12		0.0672	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1623	chr9	136137105	136137106	rs687289	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	9q34.2	ABO	rs687289-A	0.318006	8E-23		0.032100316	[0.026-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
1623	chr9	136137105	136137106	rs687289	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 799 African American cases, 157,769 European ancestry controls, 14,353 African American controls	NA	9q34.2	ABO	rs687289-A	NR	1E-174		1.34	[1.31-1.36]	Affymetrix, Illumina [12923718] (imputed)	N
1623	chr9	136137105	136137106	rs687289	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 157,769 European ancestry controls	NA	9q34.2	NR	rs687289-?	NR	2E-172		0.293	[0.27-0.31] unit increase	Affymetrix, Illumina [12923718] (imputed)	N
1623	chr9	136137105	136137106	rs687289	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	9q34.2	ABO	rs687289-A	0.33	5E-1443		0.197	[0.19-0.2] unit increase	Affymetrix, Illumina [10537485] (imputed)	N
1623	chr9	136137105	136137106	rs687289	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	Factor VIII levels	25,897 European ancestry individuals, 4,500 African American individuals, 773 Asian ancestry individuals, 1,440 Hispanic individuals	NA	9q34.2	ABO	rs687289-A	0.36	2E-770		0.1446	[0.14-0.15] unit increase	Affymetrix, Illumina [13887196] (imputed)	N
1623	chr9	136137105	136137106	rs687289	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Activated partial thromboplastin time	37,767 Japanese ancestry individuals	NA	9q34.2	ABO	rs687289-?	NR	9E-68		0.1267	[0.11-0.14] unit decrease novel	Illumina [6108953] (imputed)	N
1623	chr9	136137105	136137106	rs687289	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	9q34.2	ABO	rs687289-A	0.3599596	8E-10	(EA, Mannose-binding protein C)	0.2817	[0.19-0.37] unit increase	Affymetrix [509946]	N
1623	chr9	136137105	136137106	rs687289	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	9q34.2	ABO	rs687289-A	0.316	8E-26		0.04019085	[0.033-0.048] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1623	chr9	136137105	136137106	rs687289	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	9q34.2	NR	rs687289-?		6E-36	(VWF)	0.4338	[NR] unit increase	Illumina [NR]	N
1623	chr9	136137105	136137106	rs687289	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	9q34.2	NR	rs687289-?		4E-22	(FAS)	0.5283	[NR] unit increase	Illumina [NR]	N
1623	chr9	136137105	136137106	rs687289	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	9q34.2	NR	rs687289-?		1E-40	(HGF)	0.7384	[NR] unit increase	Illumina [NR]	N
1623	chr9	136137105	136137106	rs687289	25086665	Wolpin BM	2014-08-03	Nat Genet	Genome-wide association study identifies multiple susceptibility loci for pancreatic cancer.	Pancreatic cancer	1,582 European ancestry cases, 5,203 European ancestry controls	6,101 European ancestry cases, 9,194 European ancestry controls	9q34.2	ADAMTS13, ABO	rs687289-?	NR	2E-16		1.27	[1.20-1.35]	Illumina [608202]	N
1623	chr9	136137105	136137106	rs687289	24586186	Rueedi R	2014-02-20	PLoS Genet	Genome-wide association study of metabolic traits reveals novel gene-metabolite-disease links.	Urinary metabolites (H-NMR features)	835 European ancestry individuals	601 Brazilian individuals	9q34.2	ABO	rs687289-G	0.37	2E-12	(5.1625, Unknown)	0.27	[NR] unit decrease	Illumina [713870] (imputed)	N
1623	chr9	136137105	136137106	rs687289	24586186	Rueedi R	2014-02-20	PLoS Genet	Genome-wide association study of metabolic traits reveals novel gene-metabolite-disease links.	Urinary metabolites (H-NMR features)	835 European ancestry individuals	601 Brazilian individuals	9q34.2	ABO	rs687289-G	0.37	1E-12	(4.2375, Unknown)	0.27	[NR] unit increase	Illumina [713870] (imputed)	N
1623	chr9	136137105	136137106	rs687289	23267103	Desch KC	2012-12-24	Proc Natl Acad Sci U S A	Linkage analysis identifies a locus for plasma von Willebrand factor undetected by genome-wide association.	Coagulation factor levels	3,250 European ancestry individuals, up to 212 individuals	NA	9q34.2	OBP2A, C9orf96, LOC286310, SURF6, LOC653163, SURF5, ADAMTS13, ABO, OBP2B	rs687289-T	0.751	1E-128		0.33	[0.30-0.36] lU/dL increase	Illumina [723716]	N
1623	chr9	136137105	136137106	rs687289	20231535	Smith NL	2010-03-15	Circulation	Novel associations of multiple genetic loci with plasma levels of factor VII, factor VIII, and von Willebrand factor: The CHARGE (Cohorts for Heart and Aging Research in Genome Epidemiology) Consortium.	Factor VIII levels	15,279 European ancestry individuals	up to 7,604 European ancestry individuals	9q34.2	ABO	rs687289-?	NR	5E-324		17.7	[15.4-20] unit increase	Affymetrix, Illumina [2729294] (imputed)	N
1623	chr9	136137375	136137375	rs200478325	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9q34.2	NR	rs200478325-AT	0.0122	3E-8	(KATNAL2)	0.05071	NR unit increase	Illumina [1671387] (imputed)	N
1623	chr9	136137546	136137547	rs55876802	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	9q34.2	NR	rs55876802-A	NR	7E-25		0.0842	[0.068-0.1] unit increase	Affymetrix [9000000] (imputed)	N
1623	chr9	136137656	136137657	rs8176693	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	9q34.2		rs8176693-T	NR	9E-15		0.0275	[0.02-0.035] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
1623	chr9	136137656	136137657	rs8176693	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	120,539 East Asian ancestry individuals	NA	9q34.2		rs8176693-T	0.177802	2E-8		0.0274625	[0.018-0.037] unit increase	Illumina [13474682] (imputed)	N
1623	chr9	136137656	136137657	rs8176693	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	9q34.2	ABO	rs8176693-T	0.062557	4E-33		0.054523	[0.046-0.063] unit increase	Affymetrix [93095623] (imputed)	N
1623	chr9	136137656	136137657	rs8176693	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	9q34.2	NR	rs8176693-C	0.938056	7E-14		0.0131868	[0.0098-0.0166] unit increase	Affymetrix [16582909] (imputed)	N
1623	chr9	136137656	136137657	rs8176693	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	9q34.2	NR	rs8176693-C	0.938056	2E-8		0.011406	[0.0076-0.0152] unit increase	Affymetrix [16582965] (imputed)	N
1623	chr9	136137656	136137657	rs8176693	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q34.2	ABO	rs8176693-T	0.066	1E-32	(Platelet glycoprotein 4, CD36.2973.15.2)	0.58	[0.48-0.68] unit increase	Affymetrix [10572788] (imputed)	N
1623	chr9	136137656	136137657	rs8176693	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q34.2	ABO	rs8176693-T	0.066	1E-30	(Angiopoietin-1 receptor, soluble, TEK.3773.15.4)	0.56	[0.46-0.66] unit increase	Affymetrix [10572788] (imputed)	N
1623	chr9	136137656	136137657	rs8176693	29235454	Choquet H	2017-12-13	Nat Commun	A large multi-ethnic genome-wide association study identifies novel genetic loci for intraocular pressure.	Intraocular pressure	56,819 European ancestry individuals, 5,748 Hispanic/Latino individuals, 5,119 East Asian ancestry individuals, 2,070 African American individuals	37,930 European and Asian ancestry individuals	9q34.2	ABO	rs8176693-?	NR	3E-7		0.14	[NR] unit decrease	Affymetrix [at least 665000] (imputed)	N
1623	chr9	136137656	136137657	rs8176693	28369058	Folkersen L	2017-04-03	PLoS Genet	Mapping of 79 loci for 83 plasma protein biomarkers in cardiovascular disease.	Blood protein levels in cardiovascular risk	3,394 European ancestry individuals	2,639 individuals	9q34.2	MED22	rs8176693-C	0.91	2E-16		0.27	unit decrease	Illumina [5270624] (imputed)	N
1623	chr9	136137656	136137657	rs8176693	25552591	Lieb W	2014-12-31	Circ Cardiovasc Genet	Genome-wide association study for endothelial growth factors.	Endothelial growth factor levels	up to 3,574 European ancestry individuals	up to 3,184 European ancestry individuals	9q34.2	ABO	rs8176693-T	0.077	2E-33	(sTie-2)	0.155	[0.13-0.18] unit increase	Affymetrix [~ 2500000] (imputed)	N
1623	chr9	136137656	136137657	rs8176693	25028398	Weiss FU	2014-07-15	Gut	Fucosyltransferase 2 (FUT2) non-secretor status and blood group B are associated with elevated serum lipase activity in asymptomatic subjects, and an increased risk for chronic pancreatitis: a genetic association study.	Serum lipase activity	3,966 European ancestry individuals	1,444 European ancestry individuals	9q34.2	ABO	rs8176693-T	0.1	1E-30		0.139	[0.12-0.16] unit increase	Affymetrix [NR] (imputed)	N
1623	chr9	136137656	136137657	rs8176693	25028398	Weiss FU	2014-07-15	Gut	Fucosyltransferase 2 (FUT2) non-secretor status and blood group B are associated with elevated serum lipase activity in asymptomatic subjects, and an increased risk for chronic pancreatitis: a genetic association study.	High serum lipase activity	981 European ancestry cases, 2985 European ancestry controls	346 European ancestry cases, 1098 European ancestry controls	9q34.2	ABO	rs8176693-T	0.1	1E-22		2.27	[2.11-2.43]	Affymetrix [NR] (imputed)	N
1623	chr9	136138765	136138777	rs8176685	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	9q34.2		rs8176685-G	NR	6E-11		0.0171	[0.012-0.022] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
1623	chr9	136138765	136138777	rs8176685	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	9q34.2		rs8176685-G	NR	6E-56		0.0439	[0.038-0.049] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
1623	chr9	136138765	136138777	rs8176685	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	9q34.2	ABO	rs8176685-G	0.182358	5E-28		0.032067288	[0.026-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
1623	chr9	136138765	136138777	rs8176685	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	9q34.2	ABO	rs8176685-G	0.18251	8E-47		0.041274372	[0.036-0.047] unit decrease	Affymetrix [93095623] (imputed)	N
1623	chr9	136138765	136138777	rs8176685	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	9q34.2	ABO	rs8176685-G	0.182497	6E-19		0.025657225	[0.02-0.031] unit increase	Affymetrix [93095623] (imputed)	N
1623	chr9	136138765	136138777	rs8176685	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	9q34.2	ABO	rs8176685-?	NR	6E-507				Affymetrix, Illumina [10537485] (imputed)	N
1623	chr9	136138765	136138777	rs8176685	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	9q34.2	ABO	rs8176685-?	NR	1E-320	(EA)			Affymetrix, Illumina [10537485] (imputed)	N
1623	chr9	136138765	136138777	rs8176685	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	9q34.2	ABO	rs8176685-G	0.1809	3E-9		0.02747643	[0.018-0.037] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1623	chr9	136138765	136138777	rs8176685	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	9q34.2	ABO	rs8176685-G	0.1811	7E-10		0.02880571	[0.02-0.038] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1623	chr9	136139264	136139265	rs657152	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Colon polyp	22,049 European ancestry cases, 332,368 European ancestry controls, 4,768 East Asian ancestry cases, 166,052 East Asian ancestry controls	NA	9q34.2		rs657152-A	NR	1E-8		0.0554	[0.036-0.074] unit decrease	Affymetrix, Illumina [20457468] (imputed)	N
1623	chr9	136139264	136139265	rs657152	34255042	Schmitz D	2021-07-13	J Clin Endocrinol Metab	Genome-Wide Association Study of Estradiol Levels, and the Causal Effect of Estradiol on Bone Mineral Density.	Estradiol levels	13,367 European ancestry male cases, 134,323 European ancestry male controls	NA	9q34.2	ABO	rs657152-A	0.34	4E-18		0.887	[0.863-0.911]	Affymetrix [7871717] (imputed)	N
1623	chr9	136139264	136139265	rs657152	34202464	Wang M	2021-06-24	Genes (Basel)	Genomic Association vs. Serological Determination of ABO Blood Types in a Chinese Cohort, with Application in Mendelian Randomization.	ABO blood group (AB vs non-AB)	up to 77 Han Chinese ancestry individuals with AB blood group, up to 931 Han Chinese ancestry individuals with non-AB blood group	NA	9q34.2	ABO	rs657152-C	0.39	6E-22		48.9	[NR]	Affymetrix [733907]	N
1623	chr9	136139264	136139265	rs657152	32558485	Ellinghaus D	2020-06-17	N Engl J Med	Genomewide Association Study of Severe Covid-19 with Respiratory Failure.	Severe COVID-19 infection with respiratory failure (analysis II)	1,610 European ancestry cases, 2,180 European ancestry controls	NA	9q34.2	ABO	rs657152-A	0.35	5E-7		1.39	[1.22-1.59]	Illumina [8582560] (imputed)	N
1623	chr9	136139264	136139265	rs657152	32558485	Ellinghaus D	2020-06-17	N Engl J Med	Genomewide Association Study of Severe Covid-19 with Respiratory Failure.	Severe COVID-19 infection with respiratory failure (analysis I)	1,610 European ancestry cases, 2,205 European ancestry controls	NA	9q34.2	ABO	rs657152-A	0.35	5E-8		1.32	[1.20-1.47]	Illumina [8582968] (imputed)	N
1623	chr9	136139264	136139265	rs657152	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Estradiol levels	206,927 European ancestry men	NA	9q34.2	NR	rs657152-C	0.661134	6E-21		0.00835302	[0.0066-0.0101] unit increase	Affymetrix [16582268] (imputed)	N
1623	chr9	136139264	136139265	rs657152	25436638	Malinowski JR	2014-12-01	PLoS One	Genetic variants associated with serum thyroid stimulating hormone (TSH) levels in European Americans and African Americans from the eMERGE Network.	Serum thyroid-stimulating hormone levels	4,501 European ancestry individuals, 351 African American individuals	NA	9q34.2	ABO	rs657152-T	0.38	4E-6	(EA)	0.05	[0.03-0.07] unit increase	Illumina [up to 905285]	N
1623	chr9	136139264	136139265	rs657152	24586186	Rueedi R	2014-02-20	PLoS Genet	Genome-wide association study of metabolic traits reveals novel gene-metabolite-disease links.	Urinary metabolites (H-NMR features)	835 European ancestry individuals	601 Brazilian individuals	9q34.2	ABO	rs657152-C	0.39	1E-19	(1.2975, Unknown)	0.34	[NR] unit increase	Illumina [713870] (imputed)	N
1623	chr9	136139264	136139265	rs657152	24094242	Li J	2013-10-05	BMC Genomics	Genome-wide association study on serum alkaline phosphatase levels in a Chinese population.	Serum alkaline phosphatase levels	1,452 Han Chinese ancestry individuals	8,830 Han Chinese ancestry individuals	9q34.2	ABO	rs657152-T	0.46	4E-8		0.062	[NR] U/L decrease	Affymetrix [658288]	N
1623	chr9	136139264	136139265	rs657152	23408906	Porcu E	2013-02-07	PLoS Genet	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 14,459 European ancestry females, up to 10,936 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males	NA	9q34.2	ABO	rs657152-A	0.343	4E-10	(TSH)	0.058	[0.04-0.076] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1623	chr9	136139264	136139265	rs657152	23408906	Porcu E	2013-02-07	PLoS Genet	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 14,459 European ancestry females, up to 10,936 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males	NA	9q34.2	ABO	rs657152-A	0.343	1E-6	(TSH - Males)	0.067	[0.04-0.094] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1623	chr9	136139264	136139265	rs657152	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	9q34.2	ABO	rs657152-A	0.254	2E-8	(IL6 )	0.04	[NR] pg/mL increase	Illumina [899892]	N
1623	chr9	136139264	136139265	rs657152	21829393	Plagnol V	2011-08-04	PLoS Genet	Genome-wide association analysis of autoantibody positivity in type 1 diabetes cases.	Gastric parietal cell autoantibody levels in type 1 diabetes	4,328 European ancestry cases	NA	9q34.2	ABO	rs657152-G		1E-13		2.94	[2.13-4.00]	Affymetrix, Illumina [NR]	N
1623	chr9	136139264	136139265	rs657152	20529992	Teupser D	2010-06-07	Circ Cardiovasc Genet	Genetic regulation of serum phytosterol levels and risk of coronary artery disease.	Phytosterol levels	1,495 European ancestry individuals	2,917 European ancestry individuals	9q34.2	ABO	rs657152-T	0.383	9E-13	(campesterol)	8.0	[NR] % increase	Affymetrix [374370]	N
1623	chr9	136139264	136139265	rs657152	18940312	Yuan X	2008-10-10	Am J Hum Genet	Population-based genome-wide association studies reveal six loci influencing plasma levels of liver enzymes.	Liver enzyme levels	7,751 European ancestry individuals	1,005 European ancestry individuals, 3,669 Asian Indian ancestry individuals	9q34.2	ABO	rs657152-T	0.39	2E-30	(ALP)	0.05	[0.039-0.055] U/L decrease	Affymetrix, Illumina [up to 496032]	N
1623	chr9	136139907	136139915	rs149092047	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA			rs149092047-G	NR	8E-17		0.0191	[0.015-0.024] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
1623	chr9	136139907	136139915	rs149092047	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	135,808 East Asian ancestry individuals	NA			rs149092047-G	0.275731	3E-34		0.048683	[0.041-0.056] unit increase	Illumina [13476599] (imputed)	N
1623	chr9	136139907	136139915	rs149092047	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA			rs149092047-G	NR	1E-3948		0.3022	[0.3-0.31] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
1623	chr9	136139907	136139915	rs149092047	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	118,886 East Asian ancestry individuals	NA			rs149092047-G	0.276207	8E-1052		0.297389	[0.29-0.31] unit decrease	Illumina [13474352] (imputed)	N
1623	chr9	136139907	136139915	rs149092047	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA			rs149092047-G	NR	5E-207		0.0598	[0.056-0.064] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
1623	chr9	136139907	136139915	rs149092047	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA			rs149092047-G	NR	2E-69		0.0407	[0.036-0.045] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
1623	chr9	136139907	136139915	rs149092047	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA			rs149092047-G	NR	1E-197		0.0552	[0.052-0.059] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
1623	chr9	136139907	136139915	rs149092047	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	152,447 East Asian ancestry individuals	NA			rs149092047-G	0.276105	4E-54		0.0531003	[0.046-0.06] unit decrease	Illumina [13478948] (imputed)	N
1623	chr9	136139907	136139915	rs149092047	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	153,015 East Asian ancestry individuals	NA			rs149092047-G	0.27559	5E-51		0.0524979	[0.046-0.059] unit decrease	Illumina [13478961] (imputed)	N
1623	chr9	136139907	136139915	rs149092047	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA		ABO	rs149092047-G	0.253695	1E-33		0.05986688	[0.05-0.07] unit decrease	Affymetrix [93095623] (imputed)	N
1623	chr9	136139907	136139915	rs149092047	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA		ABO	rs149092047-G	0.253703	2E-29		0.028986305	[0.024-0.034] unit increase	Affymetrix [93095623] (imputed)	N
1623	chr9	136139907	136139915	rs149092047	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA		ABO	rs149092047-G	0.253602	2E-159		0.06892145	[0.064-0.074] unit decrease	Affymetrix [93095623] (imputed)	N
1623	chr9	136139907	136139915	rs149092047	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA		ABO	rs149092047-G	0.253644	4E-41		0.06622191	[0.057-0.076] unit increase	Affymetrix [93095623] (imputed)	N
1623	chr9	136139907	136139915	rs149092047	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA		ABO	rs149092047-G	0.25367	4E-45		0.03676976	[0.032-0.042] unit increase	Affymetrix [93095623] (imputed)	N
1623	chr9	136139907	136139915	rs149092047	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA		ABO	rs149092047-G	0.253573	6E-12		0.017642906	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1623	chr9	136139907	136139915	rs149092047	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA		ABO	rs149092047-G	0.253609	9E-197		0.07732965	[0.072-0.082] unit decrease	Affymetrix [93095623] (imputed)	N
1623	chr9	136139907	136139915	rs149092047	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA		ABO	rs149092047-G	0.247	5E-314	(Sulfhydryl oxidase 2, QSOX2.8397.147.3)	0.91	[0.87-0.95] unit increase	Affymetrix [10572788] (imputed)	N
1623	chr9	136139907	136139915	rs149092047	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA		ABO	rs149092047-G	0.247	5E-1265	(Histo-blood group ABO system transferase, ABO.9253.52.3)	1.31	[1.27-1.35] unit increase	Affymetrix [10572788] (imputed)	N
1623	chr9	136139907	136139915	rs149092047	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA		ABO	rs149092047-G	0.247	2E-94	(Golgi membrane protein 1, GOLM1.8983.7.3)	0.56	[0.5-0.62] unit increase	Affymetrix [10572788] (imputed)	N
1623	chr9	136139907	136139915	rs149092047	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA		ABO	rs149092047-G	0.247	2E-172	(Protein FAM3D, FAM3D.13102.1.3)	0.72	[0.66-0.78] unit increase	Affymetrix [10572788] (imputed)	N
1623	chr9	136139907	136139915	rs149092047	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA		ABO	rs149092047-G	0.247	1E-23	(DNA/RNA-binding protein KIN17, KIN.14643.27.3)	0.28	[0.22-0.34] unit decrease	Affymetrix [10572788] (imputed)	N
1623	chr9	136139907	136139915	rs149092047	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	TRAIL levels	8,186 Finnish ancestry individuals	NA		NR	rs149092047-GAAACTGCC		5E-6		0.0774	[0.044-0.111] SD units increase	NR [10700000] (imputed)	N
1623	chr9	136139907	136139915	rs149092047	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA		ABO	rs149092047-G	0.2512	5E-65		0.06962219	[0.062-0.078] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1623	chr9	136139907	136139907	rs782134971	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glucose levels	114,870 European ancestry individuals	NA	9q34.2		rs782134971-GAAACTGCC	0.746896	2E-9		0.0281236	[0.019-0.037] unit decrease	NR [11722792] (imputed)	N
1623	chr9	136139907	136139907	rs782134971	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Fibrosis-4 index in high alcohol intake	33,324 British ancestry individuals	NA	9q34.2		rs782134971-?	0.2558	2E-11		0.008553	unit decrease	NR [6200000] (imputed)	N
1623	chr9	136139907	136139907	rs782134971	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Aspartate aminotransferase platelet ratio index in high alcohol intake	33,330 British ancestry individuals	NA	9q34.2		rs782134971-?	0.2558	3E-6		0.007378	unit decrease	NR [6200000] (imputed)	N
1623	chr9	136139907	136139907	rs782134971	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	9q34.2	ABO	rs782134971-G	0.25	3E-8				NR [> 9500000] (imputed)	N
1623	chr9	136140461	136140462	rs1633513	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	9q34.2	ABO	rs1633513-C	0.27	1E-300		38.2	z-score increase	Affymetrix [4311822] (imputed)	N
1623	chr9	136141440	136141441	rs35230453	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q34.2	NR	rs35230453-C	0.31	8E-44	(Tyrosine-protein kinase receptor Tie-1, soluble, TIE1.2844.53.2)	0.37	[0.31-0.43] unit increase	Affymetrix [10572788] (imputed)	N
1623	chr9	136141503	136141504	rs13299342	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	9q34.2	ABO	rs13299342-A	0.130949	3E-17		0.0367613	[0.028-0.045] unit decrease	Affymetrix [93095623] (imputed)	N
1623	chr9	136141869	136141870	rs2519093	35264221	Caron B	2022-03-09	Genome Med	Integrative genetic and immune cell analysis of plasma proteins in healthy donors identifies novel associations involving primary immune deficiency genes.	PECAM 1 plasma levels	400 French ancestry individuals	NA	9q34.2		rs2519093-C	NR	9E-13		0.14	[0.1-0.18] ng/mL decrease	Illumina [5201092] (imputed)	N
1623	chr9	136141869	136141870	rs2519093	35264221	Caron B	2022-03-09	Genome Med	Integrative genetic and immune cell analysis of plasma proteins in healthy donors identifies novel associations involving primary immune deficiency genes.	E Selectin plasma levels	400 French ancestry individuals	NA	9q34.2		rs2519093-C	NR	2E-22		0.395	[0.33-0.46] ng/mL decrease	Illumina [5201092] (imputed)	N
1623	chr9	136141869	136141870	rs2519093	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	9q34.2		rs2519093-C	0.816261	2E-17		0.0429804	[0.033-0.053] unit increase	NR [11722792] (imputed)	N
1623	chr9	136141869	136141870	rs2519093	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	9q34.2		rs2519093-C	0.816375	3E-41		0.0695286	[0.059-0.08] unit increase	NR [11722792] (imputed)	N
1623	chr9	136141869	136141870	rs2519093	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	9q34.2		rs2519093-C	0.816261	2E-37		0.065779	[0.056-0.076] unit increase	NR [11722792] (imputed)	N
1623	chr9	136141869	136141870	rs2519093	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	9q34.2		rs2519093-C	0.816261	2E-17		0.0437754	[0.034-0.054] unit increase	NR [11722792] (imputed)	N
1623	chr9	136141869	136141870	rs2519093	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	9q34.2		rs2519093-C	0.816261	2E-36		0.0635228	[0.054-0.073] unit increase	NR [11722792] (imputed)	N
1623	chr9	136141869	136141870	rs2519093	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	9q34.2		rs2519093-C	0.816261	2E-24		0.0533791	[0.043-0.064] unit increase	NR [11722792] (imputed)	N
1623	chr9	136141869	136141870	rs2519093	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	9q34.2		rs2519093-C	0.816261	9E-16		0.0416703	[0.032-0.052] unit increase	NR [11722792] (imputed)	N
1623	chr9	136141869	136141870	rs2519093	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	9q34.2		rs2519093-C	0.816261	3E-14		0.0389893	[0.029-0.049] unit increase	NR [11722792] (imputed)	N
1623	chr9	136141869	136141870	rs2519093	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	9q34.2		rs2519093-C	0.816375	1E-26		0.0570028	[0.047-0.067] unit decrease	NR [11722792] (imputed)	N
1623	chr9	136141869	136141870	rs2519093	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	9q34.2		rs2519093-C	0.816261	4E-23		0.0502803	[0.04-0.06] unit decrease	NR [11722792] (imputed)	N
1623	chr9	136141869	136141870	rs2519093	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	9q34.2		rs2519093-C	0.816261	4E-44		0.0713236	[0.061-0.081] unit decrease	NR [11722792] (imputed)	N
1623	chr9	136141869	136141870	rs2519093	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	9q34.2		rs2519093-C	0.816261	1E-22		0.0518117	[0.041-0.062] unit decrease	NR [11722792] (imputed)	N
1623	chr9	136141869	136141870	rs2519093	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	9q34.2		rs2519093-C	0.816375	2E-28		0.0571138	[0.047-0.067] unit decrease	NR [11722792] (imputed)	N
1623	chr9	136141869	136141870	rs2519093	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	9q34.2		rs2519093-C	0.816261	2E-25		0.0528314	[0.043-0.063] unit decrease	NR [11722792] (imputed)	N
1623	chr9	136141869	136141870	rs2519093	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	9q34.2		rs2519093-C	0.816261	2E-8		0.0288969	[0.019-0.039] unit decrease	NR [11722792] (imputed)	N
1623	chr9	136141869	136141870	rs2519093	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	9q34.2		rs2519093-C	0.816261	3E-41		0.0682993	[0.058-0.078] unit decrease	NR [11722792] (imputed)	N
1623	chr9	136141869	136141870	rs2519093	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	9q34.2		rs2519093-C	0.81627	2E-48		0.0771588	[0.067-0.088] unit decrease	NR [11722792] (imputed)	N
1623	chr9	136141869	136141870	rs2519093	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	9q34.2		rs2519093-C	0.816261	1E-15		0.0423626	[0.032-0.053] unit decrease	NR [11722792] (imputed)	N
1623	chr9	136141869	136141870	rs2519093	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	9q34.2		rs2519093-C	0.816375	2E-34		0.0623749	[0.052-0.072] unit decrease	NR [11722792] (imputed)	N
1623	chr9	136141869	136141870	rs2519093	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	9q34.2		rs2519093-C	0.81625	1E-8		0.0301973	[0.02-0.041] unit decrease	NR [11722792] (imputed)	N
1623	chr9	136141869	136141870	rs2519093	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	9q34.2		rs2519093-C	0.816261	2E-29		0.0564032	[0.047-0.066] unit decrease	NR [11722792] (imputed)	N
1623	chr9	136141869	136141870	rs2519093	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	9q34.2		rs2519093-C	0.81627	5E-49		0.075147	[0.065-0.085] unit decrease	NR [11722792] (imputed)	N
1623	chr9	136141869	136141870	rs2519093	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small HDL	115,082 European ancestry individuals	NA	9q34.2		rs2519093-C	0.816261	3E-23		0.0530983	[0.043-0.064] unit decrease	NR [11722792] (imputed)	N
1623	chr9	136141869	136141870	rs2519093	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	9q34.2		rs2519093-C	0.816261	5E-18		0.0435945	[0.034-0.053] unit decrease	NR [11722792] (imputed)	N
1623	chr9	136141869	136141870	rs2519093	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	9q34.2		rs2519093-C	0.816375	1E-34		0.0626868	[0.053-0.073] unit decrease	NR [11722792] (imputed)	N
1623	chr9	136141869	136141870	rs2519093	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	9q34.2		rs2519093-C	0.81625	2E-14		0.0386844	[0.029-0.049] unit decrease	NR [11722792] (imputed)	N
1623	chr9	136141869	136141870	rs2519093	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	9q34.2		rs2519093-C	0.816261	6E-43		0.0711278	[0.061-0.081] unit decrease	NR [11722792] (imputed)	N
1623	chr9	136141869	136141870	rs2519093	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	9q34.2		rs2519093-C	0.816261	3E-45		0.0755346	[0.065-0.086] unit decrease	NR [11722792] (imputed)	N
1623	chr9	136141869	136141870	rs2519093	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	9q34.2		rs2519093-C	0.816261	4E-33		0.0601736	[0.05-0.07] unit decrease	NR [11722792] (imputed)	N
1623	chr9	136141869	136141870	rs2519093	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	9q34.2		rs2519093-C	0.816261	6E-19		0.0474908	[0.037-0.058] unit decrease	NR [11722792] (imputed)	N
1623	chr9	136141869	136141870	rs2519093	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	9q34.2		rs2519093-C	0.81627	7E-57		0.082869	[0.073-0.093] unit decrease	NR [11722792] (imputed)	N
1623	chr9	136141869	136141870	rs2519093	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	9q34.2		rs2519093-C	0.816261	4E-13		0.0375592	[0.027-0.048] unit decrease	NR [11722792] (imputed)	N
1623	chr9	136141869	136141870	rs2519093	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TPST2	5,350 Icelandic ancestry individuals	NA	9q34.2		rs2519093-T	0.1214	6E-16		0.225162	[0.17-0.28] unit increase	Illumina [7506463] (imputed)	N
1623	chr9	136141869	136141870	rs2519093	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ICAM4	5,364 Icelandic ancestry individuals	NA	9q34.2		rs2519093-T	0.1214	9E-36		0.360126	[0.3-0.42] unit decrease	Illumina [7506463] (imputed)	N
1623	chr9	136141869	136141870	rs2519093	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ICAM4	5,364 Icelandic ancestry individuals	NA	9q34.2		rs2519093-T	0.1214	5E-29		0.322996	[0.27-0.38] unit decrease	Illumina [7506463] (imputed)	N
1623	chr9	136141869	136141870	rs2519093	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GLCE	5,358 Icelandic ancestry individuals	NA	9q34.2		rs2519093-T	0.1214	3E-48		0.412802	[0.36-0.47] unit increase	Illumina [7506463] (imputed)	N
1623	chr9	136141869	136141870	rs2519093	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FAM3B	5,368 Icelandic ancestry individuals	NA	9q34.2		rs2519093-T	0.1214	2E-20		0.268491	[0.21-0.33] unit increase	Illumina [7506463] (imputed)	N
1623	chr9	136141869	136141870	rs2519093	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CHST12	5,356 Icelandic ancestry individuals	NA	9q34.2		rs2519093-T	0.1214	8E-15		0.218862	[0.16-0.27] unit increase	Illumina [7506463] (imputed)	N
1623	chr9	136141869	136141870	rs2519093	34757267	Teng MS	2021-10-15	Atherosclerosis	Genome-wide association study revealed novel candidate gene loci associated with soluble E-selectin levels in a Taiwanese population.	Soluble E-selectin levels	4,525 East Asian ancestry individuals	NA	9q34.2		rs2519093-?	NR	3E-271		0.1723	[0.16-0.18] unit decrease	Affymetrix [7338548] (imputed)	N
1623	chr9	136141869	136141870	rs2519093	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	9q34.2		rs2519093-T	NR	5E-41		0.0321	[0.027-0.037] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1623	chr9	136141869	136141870	rs2519093	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	154,355 East Asian ancestry individuals	NA	9q34.2		rs2519093-T	0.27567	8E-11		0.0246807	[0.017-0.032] unit decrease	Illumina [13479091] (imputed)	N
1623	chr9	136141869	136141870	rs2519093	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	9q34.2		rs2519093-T	NR	2E-109		0.0532	[0.048-0.058] unit increase	Affymetrix, Illumina [20536134] (imputed)	N
1623	chr9	136141869	136141870	rs2519093	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	153,512 East Asian ancestry individuals	NA	9q34.2		rs2519093-T	0.275511	3E-66		0.0600004	[0.053-0.067] unit decrease	Illumina [13479135] (imputed)	N
1623	chr9	136141869	136141870	rs2519093	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	9q34.2		rs2519093-T	NR	4E-35		0.0327	[0.028-0.038] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
1623	chr9	136141869	136141870	rs2519093	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	9q34.2		rs2519093-T	0.272805211	2E-11		0.099973336	[0.071-0.129] unit increase	Illumina [13427135] (imputed)	N
1623	chr9	136141869	136141870	rs2519093	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	9q34.2		rs2519093-T	NR	3E-100		0.0562	[0.051-0.061] unit increase	Affymetrix, Illumina [20521447] (imputed)	N
1623	chr9	136141869	136141870	rs2519093	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	9q34.2		rs2519093-T	NR	1E-173		0.0573	[0.053-0.061] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
1623	chr9	136141869	136141870	rs2519093	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	9q34.2		rs2519093-T	NR	2E-15		0.0186	[0.014-0.023] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
1623	chr9	136141869	136141870	rs2519093	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	9q34.2	NR	rs2519093-T	0.1826	4E-11				NR [9056863] (imputed)	N
1623	chr9	136141869	136141870	rs2519093	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	9q34.2		rs2519093-C	0.816	3E-19				Affymetrix [10369434] (imputed)	N
1623	chr9	136141869	136141870	rs2519093	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	9q34.2	ABO	rs2519093-C	0.81	5E-44		13.9	z-score increase	Affymetrix [4314223] (imputed)	N
1623	chr9	136141869	136141870	rs2519093	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	9q34.2	ABO	rs2519093-T	0.184082	5E-19		1.09	[1.07-1.11]	NR [8126035] (imputed)	N
1623	chr9	136141869	136141870	rs2519093	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	CX3CL1 levels	21,758 European ancestry individuals	9,173 individuals	9q34.2		rs2519093-T	0.2	3E-13		0.0947	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1623	chr9	136141869	136141870	rs2519093	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	9q34.2	ABO	rs2519093-T	0.184377	3E-52		0.043327432	[0.038-0.049] unit decrease	Affymetrix [93095623] (imputed)	N
1623	chr9	136141869	136141870	rs2519093	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	9q34.2	ABO	rs2519093-T	0.184399	1E-180		0.0830219	[0.077-0.089] unit decrease	Affymetrix [93095623] (imputed)	N
1623	chr9	136141869	136141870	rs2519093	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q34.2	NR	rs2519093-T	0.200499	2E-73				Affymetrix, Illumina [24649327] (imputed)	N
1623	chr9	136141869	136141870	rs2519093	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	9q34.2	NR	rs2519093-T	0.185612	9E-68		0.04119	[0.037-0.046] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1623	chr9	136141869	136141870	rs2519093	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	150,708 East Asian ancestry individuals	NA	9q34.2	NR	rs2519093-C	0.730117	4E-60		0.066854	[0.059-0.075] SD units increase	Affymetrix, Illumina [16709798] (imputed)	N
1623	chr9	136141869	136141870	rs2519093	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q34.2	NR	rs2519093-T	0.193304	6E-62				Affymetrix, Illumina [23114412] (imputed)	N
1623	chr9	136141869	136141870	rs2519093	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	9q34.2	NR	rs2519093-T	0.184749	1E-58		0.040099	[0.035-0.045] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
1623	chr9	136141869	136141870	rs2519093	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q34.2	NR	rs2519093-T	0.200386	1E-289				Affymetrix, Illumina [24653286] (imputed)	N
1623	chr9	136141869	136141870	rs2519093	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	149,861 East Asian ancestry individuals	NA	9q34.2	NR	rs2519093-C	0.730094	3E-50		0.061142	[0.053-0.069] SD units increase	Affymetrix, Illumina [16709126] (imputed)	N
1623	chr9	136141869	136141870	rs2519093	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	142,940 East Asian ancestry individuals	NA	9q34.2	NR	rs2519093-C	0.727227	6E-45		0.058829	[0.051-0.067] SD units increase	Affymetrix, Illumina [16289021] (imputed)	N
1623	chr9	136141869	136141870	rs2519093	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	9q34.2	NR	rs2519093-C	0.815454	2E-228		0.079807	[0.075-0.085] unit decrease	Affymetrix [15000001]	N
1623	chr9	136141869	136141870	rs2519093	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	9q34.2	SURF6	rs2519093-C	0.815451	1E-16		0.0212354	[0.016-0.026] unit increase	Affymetrix [NR] (imputed)	N
1623	chr9	136141869	136141870	rs2519093	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red blood cell traits (multivariate analysis)	29,513 European ancestry individuals	NA	9q34.2	NR	rs2519093-?	0.8	1E-8				Affymetrix, Illumina [21000000] (imputed)	N
1623	chr9	136141869	136141870	rs2519093	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red blood cell traits (multivariate analysis)	20,697 Hispanic or Latin American individuals	NA	9q34.2	NR	rs2519093-?	0.85	1E-8				Affymetrix, Illumina [21000000] (imputed)	N
1623	chr9	136141869	136141870	rs2519093	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red blood cell count	8,679 African American individuals, 17,412 Hispanic or Latin American individuals, 14,690 European ancestry individuals, 127 Asian ancestry individuals, 20 Native American ancestry individuals, 382 individuals	NA	9q34.2		rs2519093-?	0.8289	1E-7		0.0209	[0.013-0.029] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
1623	chr9	136141869	136141870	rs2519093	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Hemoglobin concentration	29,379 European ancestry individuals	NA	9q34.2		rs2519093-?	0.803	2E-9		0.0611	[0.041-0.081] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
1623	chr9	136141869	136141870	rs2519093	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Hemoglobin concentration	20,692 Hispanic or Latin American individuals	NA	9q34.2		rs2519093-?	0.8495	7E-10		0.0973	[0.067-0.128] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
1623	chr9	136141869	136141870	rs2519093	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Hemoglobin concentration	16,186 African American individuals, 20,692 Hispanic or Latin American individuals, 29,379 European ancestry individuals, 630 Asian ancestry individuals, 601 Native American ancestry individuals, 381 individuals	NA	9q34.2		rs2519093-?	0.8289	9E-18		0.0684	[0.053-0.084] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
1623	chr9	136141869	136141870	rs2519093	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Hematocrit	29,383 European ancestry individuals	NA	9q34.2		rs2519093-?	0.803	1E-8		0.1718	[0.11-0.23] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
1623	chr9	136141869	136141870	rs2519093	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Hematocrit	20,704 Hispanic or Latin American individuals	NA	9q34.2		rs2519093-?	0.8495	8E-8		0.2441	[0.15-0.33] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
1623	chr9	136141869	136141870	rs2519093	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Hematocrit	16,184 African American individuals, 20,704 Hispanic or Latin American individuals, 29,383 European ancestry individuals, 631 Asian ancestry individuals, 601 Native American ancestry individuals, 381 individuals	NA	9q34.2		rs2519093-?	0.8289	6E-16		0.1893	[0.14-0.24] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
1623	chr9	136141869	136141870	rs2519093	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	9q34.2	ABO	rs2519093-?	NR	2E-16		0.0277	[0.022-0.034] unit decrease	Affymetrix [5701386] (imputed)	N
1623	chr9	136141869	136141870	rs2519093	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x short total sleep time interaction (2df test)	2,974 African American short sleepers, 365 Chinese ancestry short sleepers, 110 Asian ancestry short sleepers, at least 8,230 European ancestry short sleepers, 1,079 Hispanic/Latino short sleepers, 11,801 African American controls, 1,425 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,097 European ancestry controls, 4,023 Hispanic/Latino controls	at least 214 African American short sleepers, 629 East Asian ancestry short sleepers, up to 6,761 European ancestry short sleepers, 2,473 Hispanic short sleepers, at least 913 African American controls, 2,504 East Asian ancestry controls, up to 26,764 European ancestry controls, 9,854 Hispanic controls	9q34.2	ABO	rs2519093-?	NR	4E-34		2.633	[2.2-3.06] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1623	chr9	136141869	136141870	rs2519093	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x long total sleep time interaction (2df test)	2,913 African American long sleepers, 358 Chinese ancestry long sleepers, 110 Asian ancestry long sleepers, 7,583 European ancestry long sleepers, 1,036 Hispanic/Latino long sleepers, up to 11,862 African American controls, 1,432 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,744 European ancestry controls, 4,066 Hispanic/Latino controls	at least 214 African American long sleepers, 616 East Asian ancestry long sleepers, up to 6,657 European ancestry long sleepers, 2,457 Hispanic long sleepers, at least 913 African American controls, 2,517 East Asian ancestry controls, up to 26,868 European ancestry controls, 9,870 Hispanic controls	9q34.2	ABO	rs2519093-?	NR	1E-33		2.472	[2.04-2.91] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1623	chr9	136141869	136141870	rs2519093	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 799 African American cases, 157,769 European ancestry controls, 14,353 African American controls	NA	9q34.2	ABO	rs2519093-T	NR	4E-169		1.4	[1.37-1.43]	Affymetrix, Illumina [12923718] (imputed)	N
1623	chr9	136141869	136141870	rs2519093	31217265	Sliz E	2019-06-19	J Med Genet	Genome-wide association study identifies seven novel loci associating with circulating cytokines and cell adhesion molecules in Finns.	Soluble ICAM-1	5,284 Finnish ancestry individuals	NA	9q34.2	ABO	rs2519093-T	0.188	7E-48		0.352	unit decrease	Illumina [NR] (imputed)	N
1623	chr9	136141869	136141870	rs2519093	31217265	Sliz E	2019-06-19	J Med Genet	Genome-wide association study identifies seven novel loci associating with circulating cytokines and cell adhesion molecules in Finns.	Soluble E-selectin levels	5,284 Finnish ancestry individuals	NA	9q34.2	ABO	rs2519093-T	0.188	4E-305		0.903	unit decrease	Illumina [NR] (imputed)	N
1623	chr9	136141869	136141870	rs2519093	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls	NA	9q34.2	ABO	rs2519093-T	0.185023	7E-31		0.08350693	[0.069-0.098] unit increase	Affymetrix [7288503] (imputed)	N
1623	chr9	136141869	136141870	rs2519093	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	9q34.2		rs2519093-?	NR	6E-52				NR [~ 8900000] (imputed)	N
1623	chr9	136141869	136141870	rs2519093	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	9q34.2		rs2519093-?	NR	4E-24				NR [~ 8900000] (imputed)	N
1623	chr9	136141869	136141870	rs2519093	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	9q34.2	ABO	rs2519093-T	0.1808	8E-102		0.0737	[0.067-0.08] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1623	chr9	136141869	136141870	rs2519093	30013184	Waage J	2018-07-16	Nat Genet	Genome-wide association and HLA fine-mapping studies identify risk loci and genetic pathways underlying allergic rhinitis.	Allergic rhinitis	59,762 European and unknown ancestry cases, 152,358 European and unknown ancestry controls	60,720 European ancestry cases, 618,527 European ancestry controls	9q34.2	ABO, OBP2B	rs2519093-T	0.1957	3E-16		1.05	[1.04-1.07]	Affymetrix, Illumina, Perlegen [16531985] (imputed)	N
1623	chr9	136141869	136141870	rs2519093	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q34.2	ABO	rs2519093-T	0.178	8E-198	(Interleukin-3 receptor subunit alpha, IL3RA.13744.37.3)	0.86	[0.8-0.92] unit decrease	Affymetrix [10572788] (imputed)	N
1623	chr9	136141869	136141870	rs2519093	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q34.2	ABO	rs2519093-T	0.178	6E-80	(Vascular endothelial growth factor receptor 3, FLT4.2358.19.2)	0.58	[0.52-0.64] unit decrease	Affymetrix [10572788] (imputed)	N
1623	chr9	136141869	136141870	rs2519093	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q34.2	ABO	rs2519093-T	0.178	4E-48	(P-selectin, SELP.4154.57.2)	0.46	[0.4-0.52] unit decrease	Affymetrix [10572788] (imputed)	N
1623	chr9	136141869	136141870	rs2519093	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q34.2	ABO	rs2519093-T	0.178	4E-23	(N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 2, B3GNT2.7980.72.3)	0.31	[0.25-0.37] unit increase	Affymetrix [10572788] (imputed)	N
1623	chr9	136141869	136141870	rs2519093	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q34.2	ABO	rs2519093-T	0.178	3E-20	(Protein FAM3B, FAM3B.9177.6.3)	0.29	[0.23-0.35] unit increase	Affymetrix [10572788] (imputed)	N
1623	chr9	136141869	136141870	rs2519093	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q34.2	ABO	rs2519093-T	0.178	3E-19	(Thrombospondin type-1 domain-containing protein 1, THSD1.5621.64.3)	0.29	[0.23-0.35] unit decrease	Affymetrix [10572788] (imputed)	N
1623	chr9	136141869	136141870	rs2519093	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q34.2	ABO	rs2519093-T	0.178	2E-89	(C1GALT1-specific chaperone 1, C1GALT1C1.5735.54.3)	0.61	[0.55-0.67] unit increase	Affymetrix [10572788] (imputed)	N
1623	chr9	136141869	136141870	rs2519093	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q34.2	ABO	rs2519093-T	0.178	2E-474	(E-selectin, SELE.3470.1.2)	1.17	[1.11-1.23] unit decrease	Affymetrix [10572788] (imputed)	N
1623	chr9	136141869	136141870	rs2519093	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q34.2	ABO	rs2519093-T	0.178	1E-78	(D-glucuronyl C5-epimerase, GLCE.7808.5.3)	0.58	[0.52-0.64] unit increase	Affymetrix [10572788] (imputed)	N
1623	chr9	136141869	136141870	rs2519093	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q34.2	ABO	rs2519093-T	0.178	1E-155	(Adhesion G protein-coupled receptor F5, ADGRF5.6409.57.3)	0.78	[0.72-0.84] unit decrease	Affymetrix [10572788] (imputed)	N
1623	chr9	136141869	136141870	rs2519093	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9q34.2	NR	rs2519093-C	NR	2E-53		0.082	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1623	chr9	136141869	136141870	rs2519093	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9q34.2	NR	rs2519093-C	0.831	1E-10	(Hispanic)	0.129	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1623	chr9	136141869	136141870	rs2519093	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9q34.2	NR	rs2519093-C	0.806	3E-41	(EA)	0.078	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1623	chr9	136141869	136141870	rs2519093	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9q34.2	NR	rs2519093-C	NR	7E-65		0.092	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1623	chr9	136141869	136141870	rs2519093	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9q34.2	NR	rs2519093-C	0.831	1E-14	(Hispanic)	0.155	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1623	chr9	136141869	136141870	rs2519093	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9q34.2	NR	rs2519093-C	0.806	2E-48	(EA)	0.087	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1623	chr9	136141869	136141870	rs2519093	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9q34.2	NR	rs2519093-C	0.797	1E-6	(East Asian)	0.098	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1623	chr9	136141869	136141870	rs2519093	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum alkaline phosphatase levels	105,030 Japanese ancestry individuals	NA	9q34.2	ABO	rs2519093-?	NR	2E-887		0.3104	[0.3-0.32] unit decrease novel	Illumina [6108953] (imputed)	N
1623	chr9	136141869	136141870	rs2519093	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Red blood cell count	108,794 Japanese ancestry individuals	NA	9q34.2	ABO	rs2519093-?	NR	7E-45		0.06646	[0.057-0.076] unit decrease novel	Illumina [6108953] (imputed)	N
1623	chr9	136141869	136141870	rs2519093	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Hemoglobin	108,769 Japanese ancestry individuals	NA	9q34.2	ABO	rs2519093-?	NR	1E-35		0.0588	[0.05-0.068] unit decrease novel	Illumina [6108953] (imputed)	N
1623	chr9	136141869	136141870	rs2519093	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Hematocrit	108,757 Japanese ancestry individuals	NA	9q34.2	ABO	rs2519093-?	NR	1E-33		0.05699	[0.048-0.066] unit decrease novel	Illumina [6108953] (imputed)	N
1623	chr9	136141869	136141870	rs2519093	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	9q34.2	ABO	rs2519093-T	0.1841	2E-14		0.0554	[0.041-0.07] unit increase	Affymetrix [at least 7947838] (imputed)	N
1623	chr9	136141869	136141870	rs2519093	28373160	Klarin D	2017-04-01	Circ Cardiovasc Genet	Genetic Analysis of Venous Thromboembolism in UK Biobank Identifies the ZFPM2 Locus and Implicates Obesity as a Causal Risk Factor.	Venous thromboembolism	3,290 European ancestry cases, 116,868 European ancestry controls	65,734 cases and controls (see Germain, 2015)	9q34.2	ABO	rs2519093-T	0.19	6E-26		1.41	[1.32-1.50]	Affymetrix [9155762] (imputed)	N
1623	chr9	136141869	136141870	rs2519093	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Allergy	66,973 European ancestry cases, 113,768 European ancestry controls	NA	9q34.2	ABO	rs2519093-?	NR	4E-8		1.055	[1.035-1.075]	Illumina [12845910] (imputed)	N
1623	chr9	136141869	136141870	rs2519093	26343387	Nikpay M	2015-09-07	Nat Genet	A comprehensive 1,000 Genomes-based genome-wide association meta-analysis of coronary artery disease.	Coronary artery disease	42,096 European ancestry cases, 361 African American cases, 758 Hispanic American cases, 12,658 South Asian ancestry cases, 1,802 Lebanese ancestry cases, 3,614 East Asian ancestry cases, 99,121 European ancestry controls, 2,778 African American controls, 3,337 Hispanic American controls, 12,899 South Asian ancestry controls, 466 Lebanese ancestry controls, 7,709 East Asian ancestry controls	NA	9q34.2	ABO	rs2519093-T	0.190872	1E-11		1.08	[1.06- 1.11]	Affymetrix, Illumina [8600000] (imputed)	N
1623	chr9	136141869	136141870	rs2519093	22672568	Heit JA	2012-06-05	J Thromb Haemost	A genome-wide association study of venous thromboembolism identifies risk variants in chromosomes 1q24.2 and 9q.	Venous thromboembolism	1,503 European and other ancestry cases, 1,459 European and other ancestry controls	1,407 cases, 1,418 controls	9q34.2	ABO	rs2519093-A	0.243	8E-16		1.69	[1.48-1.91]	Illumina [~ 2500000] (imputed)	N
1623	chr9	136142184	136142185	rs8176672	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	148,767 East Asian ancestry individuals	NA	9q34.2		rs8176672-T	0.172349	2E-8		0.0248304	[0.016-0.034] unit decrease	Illumina [13478792] (imputed)	N
1623	chr9	136142184	136142185	rs8176672	34542150	Gergei I	2021-09-20	Hum Mol Genet	GWAS META-analysis followed by MENDELIAN randomisation revealed potential control mechanisms for circulating ?-klotho levels.	Circulating plasma alpha-Klotho levels	4,376 European ancestry individuals	NA	9q34.2	NR	rs8176672-T	0.0718	2E-23		0.406	[0.33-0.49] z score increase	Affymetrix, Illumina [6439450] (imputed)	N
1623	chr9	136142184	136142185	rs8176672	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	9q34.2	ABO	rs8176672-T	0.0627	8E-16		0.0314	[0.024-0.039] unit decrease	Affymetrix [18391927] (imputed)	N
1623	chr9	136142184	136142185	rs8176672	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q34.2	ABO	rs8176672-T	0.067	9E-14	(GDNF family receptor alpha-like, GFRAL.6920.1.3)	0.37	[0.27-0.47] unit increase	Affymetrix [10572788] (imputed)	N
1623	chr9	136142184	136142185	rs8176672	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Optic cup area	20,353 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	7,333 Asian ancestry individuals	9q34.2	ABO	rs8176672-T	NR	6E-8		0.019	[0.013-0.025] unit increase	Affymetrix, Illumina [~ 8000000] (imputed)	N
1623	chr9	136142202	136142203	rs514659	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein VWF	5,356 Icelandic ancestry individuals	NA	9q34.2		rs514659-C	0.2576	7E-51		0.307266	[0.27-0.35] unit increase	Illumina [7506463] (imputed)	N
1623	chr9	136142202	136142203	rs514659	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein B3GNT2	5,359 Icelandic ancestry individuals	NA	9q34.2		rs514659-C	0.2576	7E-20		0.192852	[0.15-0.23] unit increase	Illumina [7506463] (imputed)	N
1623	chr9	136142202	136142203	rs514659	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	9q34.2	ABO	rs514659-A	0.683132	1E-32		0.00486569	[0.004-0.0057] unit decrease	Affymetrix [13995440] (imputed)	N
1623	chr9	136142202	136142203	rs514659	21239051	Reilly MP	2011-01-14	Lancet	Identification of ADAMTS7 as a novel locus for coronary atherosclerosis and association of ABO with myocardial infarction in the presence of coronary atherosclerosis: two genome-wide association studies.	Myocardial infarction in coronary artery disease	4,572 European ancestry cases, 2,739 European ancestry controls	1,211 European ancestry cases, 905 European ancestry controls	9q34.2	ABO	rs514659-C	0.37	8E-9		1.21	[1.13-1.29]	Affymetrix, Illumina [up to 2400000] (imputed)	N
1623	chr9	136142216	136142217	rs644234	23056639	de Boer RA	2012-10-09	PLoS One	A genome-wide association study of circulating galectin-3.	Protein biomarker	3,776 European ancestry individuals	3,516 individuals	9q34.2	ABO	rs644234-G	0.35	4E-47	(Galectin-3)	0.0684	[0.059-0.078] unit decrease	Illumina [2269099] (imputed)	N
1623	chr9	136142312	136142313	rs8176671	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	9q34.2	ABO	rs8176671-C	0.0622	5E-30		0.0834308	[0.069-0.098] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1623	chr9	136142354	136142355	rs643434	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Interleukin-6 levels	8,296 European ancestry individuals	NA	9q34.2	ABO	rs643434-?	NR	1E-48		0.257	[0.22-0.29] unit decrease	Illumina [NR] (imputed)	N
1623	chr9	136142354	136142355	rs643434	32469254	Matsunaga H	2020-05-29	Circ Genom Precis Med	Transethnic Meta-analysis of Genome-wide Association Studies Identifies Three New Loci and Characterizes Population-specific Differences for Coronary Artery Disease.	Coronary artery disease	15,302 Japanese ancestry cases, 76,014 European and East Asian ancestry cases, 36,140 Japanese ancestry controls, 264,785 European and East Asian ancestry controls	NA	9q34.2	ABO	rs643434-A	0.38	4E-9		1.05	[1.01-1.08]	Illumina [5167567] (imputed)	N
1623	chr9	136142354	136142355	rs643434	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	up to 92,771 European ancestry males, up to 113,387 European ancestry females	NA	9q34.2	ABO	rs643434-A	0.37	1E-9		0.023	[0.015-0.031] unit increase	Affymetrix, Illumina, Perlegen [2437193] (imputed)	N
1623	chr9	136142354	136142355	rs643434	23381943	Williams FM	2013-01-01	Ann Neurol	Ischemic stroke is associated with the ABO locus: the EuroCLOT study.	End-stage coagulation	2,100 European ancestry individuals	NA	9q34.2	ABO	rs643434-G	0.656	1E-49	(vWF)	0.51	[0.44-0.58] unit decrease	Illumina [NR] (imputed)	N
1623	chr9	136142354	136142355	rs643434	22291609	Naitza S	2012-01-26	PLoS Genet	A genome-wide association scan on the levels of markers of inflammation in Sardinians reveals associations that underpin its complex regulation.	Inflammatory biomarkers	4,694 Sardinian individuals	1,392 Sardinian individuals	9q34.2	ABO	rs643434-A	0.258	9E-25	(IL-6)			Affymetrix [~ 1900000] (imputed)	N
1623	chr9	136143211	136143212	rs544873	32769997	Zhou W	2020-08-07	Nat Commun	GWAS of thyroid stimulating hormone highlights pleiotropic effects and inverse association with thyroid cancer.	Thyroid stimulating hormone levels	119,715 European ancestry individuals	NA	9q34.2	ABO	rs544873-A	0.366656052467109	2E-18		0.0412	[0.032-0.05] SD increase	Illumina [22400000] (imputed)	N
1623	chr9	136143371	136143372	rs545971	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Faecalicatena lactaris abundance in stool	5,959 Finnish ancestry individuals	NA	9q34.2		rs545971-T	0.451418	9E-13		0.105341	[0.076-0.134] unit increase	Illumina [7980478] (imputed)	N
1623	chr9	136143371	136143372	rs545971	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antithrombotic agents)	67,653 European ancestry cases, 85,986 European ancestry controls, 54,220 East Asian ancestry cases, 124,506 East Asian ancestry controls	NA	9q34.2		rs545971-T	NR	1E-12		0.038	[0.028-0.048] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1623	chr9	136143441	136143442	rs612169	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_17:0_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	9q34.2		rs612169-G	NR	2E-10		0.0628317	[0.043-0.082] unit increase	Affymetrix [87696910] (imputed)	N
1623	chr9	136143441	136143442	rs612169	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Thrombomodulin levels	21,758 European ancestry individuals	9,173 individuals	9q34.2		rs612169-A	0.62	2E-68		0.155	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1623	chr9	136143441	136143442	rs612169	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	9q34.2	ABO	rs612169-G	0.3539157	1E-20	(von Willebrand factor)	0.417	[0.33-0.5] unit increase	Affymetrix [509946]	N
1623	chr9	136143441	136143442	rs612169	21886157	Suhre K	2011-08-31	Nature	Human metabolic individuality in biomedical and pharmaceutical research.	Metabolic traits	2,820 European ancestry individuals	NA	9q34.2	ABO	rs612169-G	0.335	9E-40	(SM-8 + 3 other traits)	0.202	[NR] unit increase	Affymetrix, Illumina [534665]	N
1623	chr9	136144453	136144454	rs8176662	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (multi-trait analysis)	90,939 European ancestry individuals	NA	9q34.2	ABO	rs8176662-A	0.94	4E-11		0.01	NR unit decrease	Affymetrix, Illumina [8002429] (imputed)	N
1623	chr9	136144453	136144454	rs8176662	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (adjusted for vertical disc diameter)	67,040 British ancestry individuals	NA	9q34.2	ABO	rs8176662-A	0.94	6E-8		0.01	NR unit decrease	Affymetrix [at least 8002429] (imputed)	N
1623	chr9	136144872	136144873	rs491626	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Creatine kinase levels	106,080 Japanese ancestry individuals	NA	9q34.2	ABO	rs491626-?	NR	1E-9		0.02552	[0.017-0.034] unit increase novel	Illumina [6108953] (imputed)	N
1623	chr9	136144959	136144960	rs492488	31070104	Jia Q	2019-05-09	J Am Heart Assoc	Genetic Determinants of Circulating Glycine Levels and Risk of Coronary Artery Disease.	Glycine levels	30,118 European ancestry individuals	NA	9q34.2	ABO	rs492488-G	0.552182	1E-8		0.051118	[0.034-0.069] unit increase	Affymetrix, Illumina [7487927] (imputed)	N
1623	chr9	136144959	136144960	rs492488	31070104	Jia Q	2019-05-09	J Am Heart Assoc	Genetic Determinants of Circulating Glycine Levels and Risk of Coronary Artery Disease.	Glycine levels	19,112 European ancestry male individuals	NA	9q34.2	ABO	rs492488-G	0.552182	5E-6		0.049598	[0.028-0.071] unit increase	Affymetrix, Illumina [7487927] (imputed)	N
1623	chr9	136144959	136144960	rs492488	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	9q34.2	NR	rs492488-G	0.739375	9E-10	(GNS, 3616_3_5)	0.17209256	[0.12-0.23] unit increase	Illumina [> 1000000] (imputed)	N
1623	chr9	136144959	136144960	rs492488	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	9q34.2	NR	rs492488-G	0.739375	8E-9	(L1CAM, 4246_40_2)	0.15977259	[0.11-0.21] unit increase	Illumina [> 1000000] (imputed)	N
1623	chr9	136144959	136144960	rs492488	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	9q34.2	NR	rs492488-G	0.739375	7E-49	(GOLM1, 8983_7_3)	0.4007433	[0.35-0.45] unit decrease	Illumina [> 1000000] (imputed)	N
1623	chr9	136144959	136144960	rs492488	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	9q34.2	NR	rs492488-G	0.739375	7E-25	(IL3RA, 13744_37_3)	0.2708515	[0.22-0.32] unit increase	Illumina [> 1000000] (imputed)	N
1623	chr9	136144959	136144960	rs492488	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	9q34.2	NR	rs492488-G	0.739375	7E-23	(MET, 2837_3_2)	0.27884126	[0.22-0.33] unit increase	Illumina [> 1000000] (imputed)	N
1623	chr9	136144959	136144960	rs492488	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	9q34.2	NR	rs492488-G	0.739375	6E-42	(INSR, 3448_13_2)	0.3690613	[0.32-0.42] unit increase	Illumina [> 1000000] (imputed)	N
1623	chr9	136144959	136144960	rs492488	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	9q34.2	NR	rs492488-G	0.739375	6E-36	(ADGRF5, 6409_57_3)	0.35516945	[0.3-0.41] unit increase	Illumina [> 1000000] (imputed)	N
1623	chr9	136144959	136144960	rs492488	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	9q34.2	NR	rs492488-G	0.739375	6E-18	(C1GALT1C1, 5735_54_3)	0.24369547	[0.19-0.3] unit decrease	Illumina [> 1000000] (imputed)	N
1623	chr9	136144959	136144960	rs492488	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	9q34.2	NR	rs492488-G	0.739375	6E-142	(SELE, 3470_1_2)	0.67299074	[0.62-0.72] unit increase	Illumina [> 1000000] (imputed)	N
1623	chr9	136144959	136144960	rs492488	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	9q34.2	NR	rs492488-G	0.739375	6E-1201	(ABO, 9253_52_3)	1.4569663	[1.43-1.48] unit decrease	Illumina [> 1000000] (imputed)	N
1623	chr9	136144959	136144960	rs492488	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	9q34.2	NR	rs492488-G	0.739375	6E-10	(CD200, 5112_73_3)	0.17039864	[0.12-0.22] unit increase	Illumina [> 1000000] (imputed)	N
1623	chr9	136144959	136144960	rs492488	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	9q34.2	NR	rs492488-G	0.739375	5E-18	(LRRC32, 7551_33_4)	0.23043685	[0.18-0.28] unit decrease	Illumina [> 1000000] (imputed)	N
1623	chr9	136144959	136144960	rs492488	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	9q34.2	NR	rs492488-G	0.739375	4E-36	(KDR, 3651_50_5)	0.3458666	[0.29-0.4] unit increase	Illumina [> 1000000] (imputed)	N
1623	chr9	136144959	136144960	rs492488	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	9q34.2	NR	rs492488-G	0.739375	4E-26	(FLT4, 2358_19_2)	0.29720503	[0.24-0.35] unit increase	Illumina [> 1000000] (imputed)	N
1623	chr9	136144959	136144960	rs492488	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	9q34.2	NR	rs492488-G	0.739375	4E-22	(CHST15, 4469_78_2)	0.26445553	[0.21-0.32] unit increase	Illumina [> 1000000] (imputed)	N
1623	chr9	136144959	136144960	rs492488	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	9q34.2	NR	rs492488-G	0.739375	3E-9	(MET, 11814_29_3)	0.16751283	[0.11-0.22] unit increase	Illumina [> 1000000] (imputed)	N
1623	chr9	136144959	136144960	rs492488	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	9q34.2	NR	rs492488-G	0.739375	3E-43	(TIE1, 2844_53_2)	0.37941295	[0.33-0.43] unit decrease	Illumina [> 1000000] (imputed)	N
1623	chr9	136144959	136144960	rs492488	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	9q34.2	NR	rs492488-G	0.739375	3E-36	(SHANK3, 13242_134_3)	0.34248224	[0.29-0.4] unit decrease	Illumina [> 1000000] (imputed)	N
1623	chr9	136144959	136144960	rs492488	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	9q34.2	NR	rs492488-G	0.739375	3E-21	(CASC4, 8838_10_3)	0.27160877	[0.22-0.33] unit decrease	Illumina [> 1000000] (imputed)	N
1623	chr9	136144959	136144960	rs492488	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	9q34.2	NR	rs492488-G	0.739375	3E-18	(CD36, 2973_15_2)	0.23257637	[0.18-0.28] unit decrease	Illumina [> 1000000] (imputed)	N
1623	chr9	136144959	136144960	rs492488	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	9q34.2	NR	rs492488-G	0.739375	3E-16	(ICAM5, 5124_62_3)	0.22626564	[0.17-0.28] unit increase	Illumina [> 1000000] (imputed)	N
1623	chr9	136144959	136144960	rs492488	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	9q34.2	NR	rs492488-G	0.739375	2E-9	(B3GNT2, 7980_72_3)	0.16965108	[0.11-0.22] unit decrease	Illumina [> 1000000] (imputed)	N
1623	chr9	136144959	136144960	rs492488	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	9q34.2	NR	rs492488-G	0.739375	2E-53	(ICAM2, 14756_29_3)	0.4247729	[0.37-0.48] unit increase	Illumina [> 1000000] (imputed)	N
1623	chr9	136144959	136144960	rs492488	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	9q34.2	NR	rs492488-G	0.739375	2E-35	(ICAM5, 8245_27_3)	0.34451154	[0.29-0.4] unit increase	Illumina [> 1000000] (imputed)	N
1623	chr9	136144959	136144960	rs492488	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	9q34.2	NR	rs492488-G	0.739375	2E-274	(CD209, 3029_52_2)	0.9099696	[0.86-0.96] unit decrease	Illumina [> 1000000] (imputed)	N
1623	chr9	136144959	136144960	rs492488	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	9q34.2	NR	rs492488-G	0.739375	2E-21	(GLCE, 7808_5_3)	0.26736942	[0.21-0.32] unit decrease	Illumina [> 1000000] (imputed)	N
1623	chr9	136144959	136144960	rs492488	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	9q34.2	NR	rs492488-G	0.739375	2E-19	(CHST15, 14097_86_3)	0.24702941	[0.19-0.3] unit increase	Illumina [> 1000000] (imputed)	N
1623	chr9	136144959	136144960	rs492488	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	9q34.2	NR	rs492488-G	0.739375	2E-13	(PNPLA2, 9802_27_3)	0.20470446	[0.15-0.26] unit increase	Illumina [> 1000000] (imputed)	N
1623	chr9	136144959	136144960	rs492488	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	9q34.2	NR	rs492488-G	0.739375	2E-13	(CASC4, 10613_33_3)	0.20858467	[0.15-0.26] unit decrease	Illumina [> 1000000] (imputed)	N
1623	chr9	136144959	136144960	rs492488	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	9q34.2	NR	rs492488-G	0.739375	2E-11	(LIFR, 5837_49_3)	0.18511346	[0.13-0.24] unit increase	Illumina [> 1000000] (imputed)	N
1623	chr9	136144959	136144960	rs492488	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	9q34.2	NR	rs492488-G	0.739375	2E-10	(FAM177A1, 8039_41_3)	0.18109752	[0.13-0.24] unit increase	Illumina [> 1000000] (imputed)	N
1623	chr9	136144959	136144960	rs492488	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	9q34.2	NR	rs492488-G	0.739375	1E-97	(FAM3D, 13102_1_3)	0.56377953	[0.51-0.61] unit decrease	Illumina [> 1000000] (imputed)	N
1623	chr9	136144959	136144960	rs492488	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	9q34.2	NR	rs492488-G	0.739375	1E-45	(F8, 13499_30_3)	0.3788475	[0.33-0.43] unit decrease	Illumina [> 1000000] (imputed)	N
1623	chr9	136144959	136144960	rs492488	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	9q34.2	NR	rs492488-G	0.739375	1E-34	(VWF, 3050_7_2)	0.33593914	[0.28-0.39] unit decrease	Illumina [> 1000000] (imputed)	N
1623	chr9	136144959	136144960	rs492488	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	9q34.2	NR	rs492488-G	0.739375	1E-22	(KIN, 14643_27_3)	0.2682045	[0.22-0.32] unit increase	Illumina [> 1000000] (imputed)	N
1623	chr9	136144959	136144960	rs492488	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	9q34.2	NR	rs492488-G	0.739375	1E-17	(MBL2, 3000_66_1)	0.23597662	[0.18-0.29] unit decrease	Illumina [> 1000000] (imputed)	N
1623	chr9	136144959	136144960	rs492488	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	9q34.2	NR	rs492488-G	0.739375	1E-13	(EPHA4, 7190_50_3)	0.2001459	[0.15-0.25] unit increase	Illumina [> 1000000] (imputed)	N
1623	chr9	136144959	136144960	rs492488	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	9q34.2	NR	rs492488-G	0.739375	1E-12	(ROBO4, 9232_1_3)	0.19016688	[0.14-0.24] unit increase	Illumina [> 1000000] (imputed)	N
1623	chr9	136144959	136144960	rs492488	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	9q34.2	NR	rs492488-G	0.739375	1E-11	(DPEP2, 8327_26_3)	0.18844478	[0.13-0.24] unit increase	Illumina [> 1000000] (imputed)	N
1623	chr9	136144959	136144960	rs492488	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	9q34.2	NR	rs492488-G	0.739375	1E-104	(QSOX2, 8397_147_3)	0.59559816	[0.54-0.65] unit decrease	Illumina [> 1000000] (imputed)	N
1623	chr9	136145117	136145118	rs494242	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	9q34.2	NR	rs494242-C	0.659937	3E-9		0.00804006	[0.0054-0.0107] unit increase	Affymetrix [16578495] (imputed)	N
1623	chr9	136145117	136145118	rs494242	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	9q34.2	NR	rs494242-C	0.65906	2E-8		0.0168975	[0.011-0.023] unit increase	Affymetrix [16580851] (imputed)	N
1623	chr9	136145239	136145240	rs495203	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	9q34.2	NR	rs495203-C	0.6651	1E-24		0.0493	[0.04-0.059] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
1623	chr9	136145403	136145404	rs9411377	31676865	Klarin D	2019-11-01	Nat Genet	Genome-wide association analysis of venous thromboembolism identifies new risk loci and genetic overlap with arterial vascular disease.	Venous thromboembolism	23,151 European ancestry cases, 553,439 European ancestry controls, 2,261 African American cases, 49,400 African American controls, 654 Hispanic cases, 21,214 Hispanic controls	17,672 cases, 167,295 controls	9q34.2	ABO	rs9411377-A	0.3129	1E-224		1.3551335	[1.33-1.38]	Affymetrix [up to 34000000] (imputed)	N
1623	chr9	136145403	136145404	rs9411377	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q34.2	ABO	rs9411377-A	0.289	3E-80	(Coagulation Factor VIII, F8.13499.30.3)	0.51	[0.45-0.57] unit increase	Affymetrix [10572788] (imputed)	N
1623	chr9	136145408	136145409	rs587707823	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	9q34.2	ABO	rs587707823-A	0.202762	9E-10		0.018140884	[0.012-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1623	chr9	136145413	136145414	rs587611953	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	9q34.2	ABO	rs587611953-A	0.164183	2E-9		0.02026129	[0.014-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1623	chr9	136145413	136145414	rs587611953	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q34.2	NR	rs587611953-A	0.169	8E-255	(Histo-blood group ABO system transferase, ABO.9253.52.3)	1.1	[1.04-1.16] unit increase	Affymetrix [10572788] (imputed)	N
1623	chr9	136145413	136145414	rs587611953	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q34.2	NR	rs587611953-A	0.169	7E-87	(E-selectin, SELE.3470.1.2)	0.7	[0.62-0.78] unit decrease	Affymetrix [10572788] (imputed)	N
1623	chr9	136145413	136145414	rs587611953	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q34.2	NR	rs587611953-A	0.169	3E-61	(Sulfhydryl oxidase 2, QSOX2.8397.147.3)	0.6	[0.52-0.68] unit increase	Affymetrix [10572788] (imputed)	N
1623	chr9	136145413	136145414	rs587611953	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q34.2	NR	rs587611953-A	0.169	3E-57	(Coagulation Factor VIII, F8.13499.30.3)	0.58	[0.5-0.66] unit increase	Affymetrix [10572788] (imputed)	N
1623	chr9	136145413	136145414	rs587611953	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q34.2	NR	rs587611953-A	0.169	3E-25	(Golgi membrane protein 1, GOLM1.8983.7.3)	0.38	[0.3-0.46] unit increase	Affymetrix [10572788] (imputed)	N
1623	chr9	136145413	136145414	rs587611953	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q34.2	NR	rs587611953-A	0.169	1E-34	(Protein FAM3D, FAM3D.13102.1.3)	0.45	[0.37-0.53] unit increase	Affymetrix [10572788] (imputed)	N
1623	chr9	136145413	136145414	rs587611953	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q34.2	NR	rs587611953-A	0.169	1E-156	(CD209 antigen, CD209.3029.52.2)	0.91	[0.85-0.97] unit increase	Affymetrix [10572788] (imputed)	N
1623	chr9	136145413	136145414	rs587611953	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	9q34.2	ABO	rs587611953-A	0.1637	1E-11		0.03631275	[0.026-0.047] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1623	chr9	136145414	136145414	rs202001822	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	9q34.2	ABO	rs202001822-?	NR	6E-78	(EA)			Affymetrix, Illumina [10537485] (imputed)	N
1623	chr9	136145414	136145414	rs202001822	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	9q34.2	ABO	rs202001822-?	NR	2E-80				Affymetrix, Illumina [10537485] (imputed)	N
1623	chr9	136145418	136145419	rs13292932	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	9q34.2		rs13292932-A	0.37	2E-13		7.35	z score increase	Affymetrix [9061022] (imputed)	N
1623	chr9	136145424	136145425	rs9411378	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GNS	5,361 Icelandic ancestry individuals	NA	9q34.2		rs9411378-A	0.1827	4E-19		0.213968	[0.17-0.26] unit decrease	Illumina [7506463] (imputed)	N
1623	chr9	136145424	136145425	rs9411378	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CHST15	5,366 Icelandic ancestry individuals	NA	9q34.2		rs9411378-A	0.1827	1E-38		0.310809	[0.26-0.36] unit decrease	Illumina [7506463] (imputed)	N
1623	chr9	136145424	136145425	rs9411378	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid vs negative)	9,913 European ancestry cases, 85,072 European ancestry controls, 2,553 Hispanic or Latin American cases, 13,086 Hispanic or Latin American controls, 506 Black or African American cases, 3,110 Black or African American controls	NA	9q34.2		rs9411378-C	NR	5E-20		0.857	[0.829-0.886]	Illumina [9939936] (imputed)	N
1623	chr9	136145424	136145425	rs9411378	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid vs negative)	9,913 European ancestry cases, 85,072 European ancestry controls	NA	9q34.2		rs9411378-?	NR	1E-14		0.865	[0.834-0.898]	Illumina [31704722] (imputed)	N
1623	chr9	136145424	136145425	rs9411378	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid vs negative)	2,553 Hispanic or Latin American cases, 13,086 Hispanic or Latin American controls	NA	9q34.2		rs9411378-?	NR	2E-6		0.818	[0.754-0.888]	Illumina [35218582] (imputed)	N
1623	chr9	136145424	136145425	rs9411378	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	9q34.2	NR	rs9411378-A	0.222	1E-8		0.001617	[0.0011-0.0022] unit decrease	Affymetrix [NR] (imputed)	N
1623	chr9	136145424	136145425	rs9411378	33283231	Calvo-Serra B	2020-12-05	Hum Mol Genet	Urinary metabolite quantitative trait loci in children and their interaction with dietary factors.	N-acetyl neuraminic acid levels	996 European ancestry individuals	NA	9q34.2		rs9411378-A	0.2612	1E-13		0.37367752	unit increase	Illumina [283704]	N
1623	chr9	136145424	136145425	rs9411378	32469254	Matsunaga H	2020-05-29	Circ Genom Precis Med	Transethnic Meta-analysis of Genome-wide Association Studies Identifies Three New Loci and Characterizes Population-specific Differences for Coronary Artery Disease.	Coronary artery disease	15,302 Japanese ancestry cases, 36,140 Japanese ancestry controls	NA	9q34.2	ABO	rs9411378-A	0.26	2E-10		1.15	[1.10-1.20]	Illumina [5932413] (imputed)	N
1623	chr9	136145424	136145425	rs9411378	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q34.2	ABO	rs9411378-A	0.253	7E-13	(C-C motif chemokine 25, CCL25.2705.5.2)	0.21	[0.15-0.27] unit decrease	Affymetrix [10572788] (imputed)	N
1623	chr9	136145424	136145425	rs9411378	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q34.2	ABO	rs9411378-A	0.253	4E-13	(C-C motif chemokine 25, CCL25.14068.29.3)	0.21	[0.15-0.27] unit decrease	Affymetrix [10572788] (imputed)	N
1623	chr9	136145424	136145425	rs9411378	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Total cholesterol levels	128,305 Japanese ancestry individuals	NA	9q34.2	ABO	rs9411378-?	NR	3E-28		0.05115	[0.042-0.06] unit increase novel	Illumina [6108953] (imputed)	N
1623	chr9	136145424	136145425	rs9411378	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Low density lipoprotein cholesterol levels	72,866 Japanese ancestry individuals	NA	9q34.2	ABO	rs9411378-?	NR	1E-19		0.05624	[0.044-0.068] unit increase novel	Illumina [6108953] (imputed)	N
1623	chr9	136145424	136145425	rs9411378	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	9q34.2	ABO	rs9411378-A	0.2601	1E-11		0.02752027	[0.02-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
1623	chr9	136145483	136145484	rs582094	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	9q34.2	ABO	rs582094-T	0.31857582039812	2E-11		0.0038815	[NR] unit decrease	Affymetrix [> 30000000] (imputed)	N
1623	chr9	136145973	136145974	rs2769071	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SHANK3	5,365 Icelandic ancestry individuals	NA	9q34.2		rs2769071-G	0.2575	9E-61		0.342479	[0.3-0.38] unit increase	Illumina [7506463] (imputed)	N
1623	chr9	136145973	136145974	rs2769071	30217807	Robinson-Cohen C	2018-09-14	J Am Soc Nephrol	Genetic Variants Associated with Circulating Fibroblast Growth Factor 23.	Circulating fibroblast growth factor 23 levels	16,624 European ancestry individuals	4,443 African ancestry individuals	9q34.2	ABO	rs2769071-A	0.6491	6E-17	(EA)	0.037	[0.027-0.047] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1623	chr9	136145993	136146015	rs144131194	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA			rs144131194-A	NR	3E-70		0.0389	[0.035-0.043] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
1623	chr9	136145993	136146015	rs144131194	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA		ABO	rs144131194-A	0.310439	1E-19		0.021888295	[0.017-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1623	chr9	136145993	136146015	rs144131194	31417091	Kou I	2019-08-15	Nat Commun	Genome-wide association study identifies 14 previously unreported susceptibility loci for adolescent idiopathic scoliosis in Japanese.	Adolescent idiopathic scoliosis	5,327 Japanese ancestry cases, 73,884 Japanese ancestry controls	NA		ABO	rs144131194-AAGAAGGGAAATTAATAAATATT	0.55	1E-11		1.15	[1.11-1.20]	Illumina [9332516] (imputed)	N
1623	chr9	136145993	136146015	rs144131194	31417091	Kou I	2019-08-15	Nat Commun	Genome-wide association study identifies 14 previously unreported susceptibility loci for adolescent idiopathic scoliosis in Japanese.	Adolescent idiopathic scoliosis	5,004 Japanese ancestry female cases, 33,679 Japanese ancestry female controls	NA		ABO	rs144131194-AAGAAGGGAAATTAATAAATATT	0.548783	2E-10		1.16	[1.11-1.21]	Illumina [9332516] (imputed)	N
1623	chr9	136146045	136146046	rs677355	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q34.2	NR	rs677355-A	0.342545	7E-13				Affymetrix, Illumina [23472807] (imputed)	N
1623	chr9	136146045	136146046	rs677355	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	9q34.2	NR	rs677355-A	0.321046	4E-12		0.014061	[0.01-0.018] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1623	chr9	136146076	136146077	rs676996	33888516	Zheng T	2021-04-22	Gut	Genome-wide analysis of 944 133 individuals provides insights into the etiology of haemorrhoidal disease.	Haemorrhoidal disease	218,920 European ancestry cases, 725,213 European ancestry controls	NA	9q34.2	ABO	rs676996-T	0.34140000000000004	5E-43		0.94	[0.94-0.95]	Affymetrix, Illumina [8494288] (imputed)	N
1623	chr9	136146076	136146077	rs676996	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	9q34.2	NR	rs676996-G	0.32021	5E-106		0.043816	[0.04-0.048] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1623	chr9	136146076	136146077	rs676996	30837465	Wittemans LBL	2019-03-05	Nat Commun	Assessing the causal association of glycine with risk of cardio-metabolic diseases.	Glycine levels	80,003 European ancestry individuals	NA	9q34.2	ABO	rs676996-T	0.668	4E-15		0.04	[0.028-0.052] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1623	chr9	136146226	136146227	rs676457	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q34.2	ABO	rs676457-T	0.315	3E-12	(Dihydrofolate reductase, DHFR.9823.2.3)	0.19	[0.13-0.25] unit increase	Affymetrix [10572788] (imputed)	N
1623	chr9	136146309	136146310	rs79343853	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SEMA6A	5,365 Icelandic ancestry individuals	NA	9q34.2		rs79343853-C	0.06825	1E-15		0.293613	[0.22-0.37] unit increase	Illumina [7506463] (imputed)	N
1623	chr9	136146309	136146310	rs79343853	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ISLR2	5,366 Icelandic ancestry individuals	NA	9q34.2		rs79343853-C	0.06825	1E-27		0.408077	[0.33-0.48] unit increase	Illumina [7506463] (imputed)	N
1623	chr9	136146309	136146310	rs79343853	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DSG2	5,368 Icelandic ancestry individuals	NA	9q34.2		rs79343853-C	0.06825	2E-16		0.301887	[0.23-0.37] unit increase	Illumina [7506463] (imputed)	N
1623	chr9	136146309	136146310	rs79343853	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ABO	5,368 Icelandic ancestry individuals	NA	9q34.2		rs79343853-C	0.06825	2E-126		0.876537	[0.8-0.95] unit increase	Illumina [7506463] (imputed)	N
1623	chr9	136146309	136146310	rs79343853	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum alkaline phosphatase levels	105,030 Japanese ancestry individuals	NA	9q34.2	NR	rs79343853-?	NR	2E-29		0.06465	[0.053-0.076] unit increase novel	Illumina [6108953] (imputed)	N
1623	chr9	136146430	136146431	rs527210	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	20,917 European ancestry cases, 440,906 European ancestry controls, 14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	9q34.2		rs527210-T	NR	5E-13		0.0718	[0.052-0.091] unit increase	Affymetrix, Illumina [25841367] (imputed)	N
1623	chr9	136146448	136146453	rs139840563	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q34.2	ABO	rs139840563-T	0.313	5E-19	(Mannose-binding protein C, MBL2.3000.66.1)	0.24	[0.18-0.3] unit increase	Affymetrix [10572788] (imputed)	N
1623	chr9	136146596	136146597	rs550057	35115690	Lopera-Maya EA	2022-02-03	Nat Genet	Effect of host genetics on the gut microbiome in 7,738 participants of the Dutch Microbiome Project.	Gut microbiota abundance (k_Bacteria.p_Actinobacteria.c_Actinobacteria.o_Coriobacteriales.f_Coriobacteriaceae.g_Collinsella.s_Collinsella_aerofaciens)	7,738 European ancestry individuals	NA	9q34.2		rs550057-C	0.7481575963718821	2E-8		0.108642176	[0.071-0.147] unit increase	Illumina [5584686] (imputed)	N
1623	chr9	136146596	136146597	rs550057	35115690	Lopera-Maya EA	2022-02-03	Nat Genet	Effect of host genetics on the gut microbiome in 7,738 participants of the Dutch Microbiome Project.	Gut microbiota abundance (k_Bacteria.p_Actinobacteria.c_Actinobacteria.o_Coriobacteriales.f_Coriobacteriaceae.g_Collinsella)	7,738 European ancestry individuals	NA	9q34.2		rs550057-C	0.748959778085992	9E-11		0.12406327	[0.087-0.162] unit increase	Illumina [5584686] (imputed)	N
1623	chr9	136146596	136146597	rs550057	35115690	Lopera-Maya EA	2022-02-03	Nat Genet	Effect of host genetics on the gut microbiome in 7,738 participants of the Dutch Microbiome Project.	Gut microbiota abundance (k_Bacteria.p_Actinobacteria.c_Actinobacteria.o_Coriobacteriales.f_Coriobacteriaceae)	7,738 European ancestry individuals	NA	9q34.2		rs550057-C	0.749772283669486	3E-9		0.110172376	[0.074-0.147] unit increase	Illumina [5584686] (imputed)	N
1623	chr9	136146596	136146597	rs550057	35115690	Lopera-Maya EA	2022-02-03	Nat Genet	Effect of host genetics on the gut microbiome in 7,738 participants of the Dutch Microbiome Project.	Gut microbiota abundance (k_Bacteria.p_Actinobacteria.c_Actinobacteria.o_Coriobacteriales)	7,738 European ancestry individuals	NA	9q34.2		rs550057-C	0.749772283669486	3E-9		0.11015501	[0.074-0.147] unit increase	Illumina [5584686] (imputed)	N
1623	chr9	136146596	136146597	rs550057	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TIE1	5,364 Icelandic ancestry individuals	NA	9q34.2		rs550057-T	0.1892	4E-11		0.15952	[0.11-0.21] unit increase	Illumina [7506463] (imputed)	N
1623	chr9	136146596	136146597	rs550057	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein QSOX2	5,354 Icelandic ancestry individuals	NA	9q34.2		rs550057-T	0.1892	4E-208		0.658008	[0.62-0.7] unit increase	Illumina [7506463] (imputed)	N
1623	chr9	136146596	136146597	rs550057	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ISLR2	5,357 Icelandic ancestry individuals	NA	9q34.2		rs550057-T	0.1892	9E-13		0.167348	[0.12-0.21] unit decrease	Illumina [7506463] (imputed)	N
1623	chr9	136146596	136146597	rs550057	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GOLM1	5,362 Icelandic ancestry individuals	NA	9q34.2		rs550057-T	0.1892	2E-94		0.471076	[0.43-0.52] unit increase	Illumina [7506463] (imputed)	N
1623	chr9	136146596	136146597	rs550057	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FAM3D	5,367 Icelandic ancestry individuals	NA	9q34.2		rs550057-T	0.1892	5E-248		0.747495	[0.7-0.79] unit increase	Illumina [7506463] (imputed)	N
1623	chr9	136146596	136146597	rs550057	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FAM177A1	5,362 Icelandic ancestry individuals	NA	9q34.2		rs550057-T	0.1892	4E-20		0.22285	[0.18-0.27] unit decrease	Illumina [7506463] (imputed)	N
1623	chr9	136146596	136146597	rs550057	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CHST15	5,366 Icelandic ancestry individuals	NA	9q34.2		rs550057-T	0.1892	1E-43		0.326761	[0.28-0.37] unit decrease	Illumina [7506463] (imputed)	N
1623	chr9	136146596	136146597	rs550057	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CASC4	5,358 Icelandic ancestry individuals	NA	9q34.2		rs550057-T	0.1892	5E-27		0.253598	[0.21-0.3] unit increase	Illumina [7506463] (imputed)	N
1623	chr9	136146596	136146597	rs550057	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C1GALT1C1	5,314 Icelandic ancestry individuals	NA	9q34.2		rs550057-T	0.1892	5E-48		0.250487	[0.22-0.28] unit increase	Illumina [7506463] (imputed)	N
1623	chr9	136146596	136146597	rs550057	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	9q34.2		rs550057-T	NR	2E-25		0.0191	[0.016-0.023] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
1623	chr9	136146596	136146597	rs550057	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	9q34.2		rs550057-T	NR	2E-8		0.0142	[0.0093-0.0191] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
1623	chr9	136146596	136146597	rs550057	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Two-hour glucose	63,396 European ancestry individuals	NA	9q34.2	ABO	rs550057-T	0.2823	4E-11		0.0526	[0.036-0.069] unit increase	Affymetrix, Illumina [30098705] (imputed)	N
1623	chr9	136146596	136146597	rs550057	33110245	Ruotsalainen SE	2020-10-27	Eur J Hum Genet	An expanded analysis framework for multivariate GWAS connects inflammatory biomarkers to functional variants and disease.	Inflammatory biomarkers (multivariate analysis)	6,890 Finnish ancestry individuals	NA	9q34.2	ABO	rs550057-?	NR	8E-14				Illumina [11329225] (imputed)	N
1623	chr9	136146596	136146597	rs550057	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q34.2	NR	rs550057-T	0.254925	1E-296				Affymetrix, Illumina [24332387] (imputed)	N
1623	chr9	136146596	136146597	rs550057	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	9q34.2	NR	rs550057-T	0.254707	3E-265		0.073621	[0.069-0.078] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1623	chr9	136146596	136146597	rs550057	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	9q34.2	NR	rs550057-T	0.25502	2E-241		0.070125	[0.066-0.074] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
1623	chr9	136146596	136146597	rs550057	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q34.2	NR	rs550057-T	0.255346	1E-257				Affymetrix, Illumina [24558453] (imputed)	N
1623	chr9	136146596	136146597	rs550057	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	9q34.2	NR	rs550057-T	0.254895	2E-215		0.066294	[0.062-0.07] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
1623	chr9	136146596	136146597	rs550057	31679650	Nath AP	2019-10-30	Am J Hum Genet	Multivariate Genome-Wide Association Analysis of a Cytokine Network Reveals Variants with Widespread Immune, Haematological, and Cardiometabolic Pleiotropy.	Cytokine network levels (multivariate analysis)	9,263 Finnish ancestry individuals	NA	9q34.2	ABO	rs550057-?	NR	3E-8				Illumina [6022229] (imputed)	N
1623	chr9	136146596	136146597	rs550057	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	9q34.2	NR	rs550057-?	NR	2E-11		2.864717	[2.02-3.71] unit increase	Illumina [32003504] (imputed)	N
1623	chr9	136146596	136146597	rs550057	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	9q34.2	NR	rs550057-?	NR	9E-10		2.359907	[1.6-3.12] unit increase	Illumina [31808917] (imputed)	N
1623	chr9	136146596	136146597	rs550057	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	9q34.2	ABO	rs550057-C	0.7393	2E-9		6.036	NR z score decrease	Illumina [26237160] (imputed)	N
1623	chr9	136146596	136146597	rs550057	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Intake of total sugars	174,424 European ancestry individuals	NA	9q34.2	ABO	rs550057-C	0.74	5E-6		0.86	[0.49-1.23] g/day increase	Affymetrix [10353649] (imputed)	N
1623	chr9	136146596	136146597	rs550057	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	9q34.2		rs550057-?	NR	1E-212				NR [~ 8900000] (imputed)	N
1623	chr9	136146596	136146597	rs550057	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	9q34.2		rs550057-?	NR	1E-12				NR [~ 8900000] (imputed)	N
1623	chr9	136146596	136146597	rs550057	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q34.2	ABO	rs550057-T	0.246	9E-19	(Protein FAM177A1, FAM177A1.8039.41.3)	0.25	[0.19-0.31] unit decrease	Affymetrix [10572788] (imputed)	N
1623	chr9	136146596	136146597	rs550057	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q34.2	ABO	rs550057-T	0.246	8E-14	(Protein jagged-1, JAG1.5092.51.3)	0.21	[0.15-0.27] unit decrease	Affymetrix [10572788] (imputed)	N
1623	chr9	136146596	136146597	rs550057	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q34.2	ABO	rs550057-T	0.246	3E-25	(Carbohydrate sulfotransferase 15, CHST15.14097.86.3)	0.29	[0.23-0.35] unit decrease	Affymetrix [10572788] (imputed)	N
1623	chr9	136146596	136146597	rs550057	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q34.2	ABO	rs550057-T	0.246	3E-19	(Intestinal-type alkaline phosphatase, ALPI.10463.23.3)	0.25	[0.19-0.31] unit decrease	Affymetrix [10572788] (imputed)	N
1623	chr9	136146596	136146597	rs550057	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q34.2	ABO	rs550057-T	0.246	1E-30	(Carbohydrate sulfotransferase 15, CHST15.4469.78.2)	0.32	[0.26-0.38] unit decrease	Affymetrix [10572788] (imputed)	N
1623	chr9	136146596	136146597	rs550057	29679657	Ferreira MA	2018-04-18	J Allergy Clin Immunol	Eleven loci with new reproducible genetic associations with allergic disease risk.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	9q34.2	ABO	rs550057-T	0.2806	3E-7	(conditional)	0.0293763	NR unit increase	NR [NR]	N
1623	chr9	136146596	136146597	rs550057	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9q34.2	NR	rs550057-C	NR	9E-42		0.065	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1623	chr9	136146596	136146597	rs550057	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9q34.2	NR	rs550057-C	0.786	6E-11	(Hispanic)	0.12	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1623	chr9	136146596	136146597	rs550057	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9q34.2	NR	rs550057-C	0.739	3E-29	(EA)	0.059	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1623	chr9	136146596	136146597	rs550057	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9q34.2	NR	rs550057-C	NR	3E-52		0.075	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1623	chr9	136146596	136146597	rs550057	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9q34.2	NR	rs550057-C	0.793	3E-7	(East Asian)	0.104	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1623	chr9	136146596	136146597	rs550057	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9q34.2	NR	rs550057-C	0.786	7E-14	(Hispanic)	0.138	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1623	chr9	136146596	136146597	rs550057	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9q34.2	NR	rs550057-C	0.739	5E-36	(EA)	0.067	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1623	chr9	136146596	136146597	rs550057	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	LDL cholesterol	up 62,166 European ancestry individuals	NA	9q34.2	ABO	rs550057-T	0.26	6E-20		0.063	[0.049-0.077] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
1623	chr9	136146596	136146597	rs550057	25820613	Warrington NM	2015-03-27	Hum Mol Genet	Genome-wide association study of blood lead shows multiple associations near ALAD.	Lead levels in blood	5,433 individuals	NA	9q34.2	ABO	rs550057-T	0.266	3E-6		0.116	[0.057-0.175] unit decrease	Illumina [6391392] (imputed)	N
1623	chr9	136147159	136147160	rs554833	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	9q34.2		rs554833-T	NR	4E-12		0.0443	[0.032-0.057] unit increase	Affymetrix, Illumina [25845091] (imputed)	N
1623	chr9	136147538	136147539	rs144458168	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9q34.2	NR	rs144458168-C	0.0122	3E-8	(KATNAL2)	0.05071	NR unit increase	Illumina [1671387] (imputed)	N
1623	chr9	136147552	136147553	rs660340	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	9q34.2	ABO	rs660340-?	NR	1E-492				Affymetrix, Illumina [10537485] (imputed)	N
1623	chr9	136147552	136147553	rs660340	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	9q34.2	ABO	rs660340-?	NR	1E-320	(EA)			Affymetrix, Illumina [10537485] (imputed)	N
1623	chr9	136147701	136147702	rs581107	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	9q34.2	NR	rs581107-T	NR	1E-24		0.0244	[0.02-0.029] unit increase	Affymetrix [9000000] (imputed)	N
1623	chr9	136147701	136147702	rs581107	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	9q34.2	NR	rs581107-T	NR	7E-883		0.1509	[0.15-0.16] unit decrease	Affymetrix [9000000] (imputed)	N
1623	chr9	136147701	136147702	rs581107	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	9q34.2	NR	rs581107-T	NR	7E-24		0.024	[0.019-0.029] unit increase	Affymetrix [9000000] (imputed)	N
1623	chr9	136147701	136147702	rs581107	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	9q34.2	NR	rs581107-T	NR	2E-11		0.0163	[0.012-0.021] unit increase	Affymetrix [9000000] (imputed)	N
1623	chr9	136147701	136147702	rs581107	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	9q34.2	NR	rs581107-T	NR	4E-14		0.018	[0.013-0.023] unit increase	Affymetrix [9000000] (imputed)	N
1623	chr9	136147701	136147702	rs581107	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	9q34.2	NR	rs581107-T	NR	3E-58		0.0384	[0.034-0.043] unit decrease	Affymetrix [9000000] (imputed)	N
1623	chr9	136147701	136147702	rs581107	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	9q34.2	NR	rs581107-T	NR	6E-11		0.0156	[0.011-0.02] unit increase	Affymetrix [9000000] (imputed)	N
1623	chr9	136147701	136147702	rs581107	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	9q34.2	NR	rs581107-T	NR	3E-18		0.0207	[0.016-0.025] unit increase	Affymetrix [9000000] (imputed)	N
1623	chr9	136149097	136149098	rs8176645	35115690	Lopera-Maya EA	2022-02-03	Nat Genet	Effect of host genetics on the gut microbiome in 7,738 participants of the Dutch Microbiome Project.	Gut microbiota abundance (k_Bacteria.p_Actinobacteria.c_Actinobacteria.o_Bifidobacteriales.f_Bifidobacteriaceae.g_Bifidobacterium.s_Bifidobacterium_bifidum)	7,738 European ancestry individuals	NA	9q34.2		rs8176645-T	0.697452229299363	6E-14		0.2539486	[0.19-0.32] unit decrease	Illumina [5584686] (imputed)	N
1623	chr9	136149097	136149098	rs8176645	35023831	Chong M	2022-01-13	Elife	GWAS and ExWAS of blood Mitochondrial DNA copy number identifies 71 loci and highlights a potential causal role in dementia.	Mitochondrial DNA copy number	395,718 British, Irish, Other White, South Asian, African ancestry individuals	NA	9q34.2	NR	rs8176645-A	0.379792	3E-8		0.0145	[0.0094-0.0196] unit decrease	Affymetrix [23037915] (imputed)	N
1623	chr9	136149097	136149098	rs8176645	28373160	Klarin D	2017-04-01	Circ Cardiovasc Genet	Genetic Analysis of Venous Thromboembolism in UK Biobank Identifies the ZFPM2 Locus and Implicates Obesity as a Causal Risk Factor.	Venous thromboembolism	3,290 European ancestry cases, 116,868 European ancestry controls	65,734 cases and controls (see Germain, 2015)	9q34.2	ABO	rs8176645-A	0.33	4E-21		1.28	[1.22-1.35]	Affymetrix [9155762] (imputed)	N
1623	chr9	136149149	136149150	rs8176644	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PEAR1	5,361 Icelandic ancestry individuals	NA	9q34.2		rs8176644-T	0.06816	1E-23		0.365133	[0.29-0.44] unit increase	Illumina [7506463] (imputed)	N
1623	chr9	136149149	136149150	rs8176644	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MINPP1	5,353 Icelandic ancestry individuals	NA	9q34.2		rs8176644-T	0.06816	5E-22		0.344178	[0.27-0.41] unit increase	Illumina [7506463] (imputed)	N
1623	chr9	136149149	136149150	rs8176644	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GFRAL	5,364 Icelandic ancestry individuals	NA	9q34.2		rs8176644-T	0.06816	2E-21		0.354269	[0.28-0.43] unit increase	Illumina [7506463] (imputed)	N
1623	chr9	136149149	136149150	rs8176644	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ENG	5,361 Icelandic ancestry individuals	NA	9q34.2		rs8176644-T	0.06816	8E-30		0.415953	[0.34-0.49] unit increase	Illumina [7506463] (imputed)	N
1623	chr9	136149149	136149150	rs8176644	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CD36	5,363 Icelandic ancestry individuals	NA	9q34.2		rs8176644-T	0.06816	1E-66		0.62217	[0.55-0.69] unit increase	Illumina [7506463] (imputed)	N
1623	chr9	136149149	136149150	rs8176644	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein BCAM	5,358 Icelandic ancestry individuals	NA	9q34.2		rs8176644-T	0.06816	1E-22		0.352352	[0.28-0.42] unit increase	Illumina [7506463] (imputed)	N
1623	chr9	136149149	136149150	rs8176644	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	9q34.2	ABO	rs8176644-T	0.060944	7E-15		0.036006723	[0.027-0.045] unit increase	Affymetrix [93095623] (imputed)	N
1623	chr9	136149149	136149150	rs8176644	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Blood urea nitrogen levels	139,818 Japanese ancestry individuals	NA	9q34.2	ABO	rs8176644-?	NR	3E-8		0.02575	[0.017-0.035] unit decrease novel	Illumina [6108953] (imputed)	N
1623	chr9	136149149	136149150	rs8176644	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	9q34.2	ABO	rs8176644-T	NR	9E-27		0.0874124	[0.071-0.104] unit decrease	Affymetrix [16832071] (imputed)	N
1623	chr9	136149149	136149150	rs8176644	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin concentration	172,851 European ancestry individuals	NA	9q34.2	ABO	rs8176644-T	0.0618	8E-16		0.05795283	[0.044-0.072] unit increase	Affymetrix [~ 2500000] (imputed)	N
1623	chr9	136149228	136149229	rs505922	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PNPLA2	5,358 Icelandic ancestry individuals	NA	9q34.2		rs505922-C	0.2575	3E-18		0.185709	[0.14-0.23] unit decrease	Illumina [7506463] (imputed)	N
1623	chr9	136149228	136149229	rs505922	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MBL2	5,368 Icelandic ancestry individuals	NA	9q34.2		rs505922-C	0.2575	7E-28		0.234791	[0.19-0.28] unit increase	Illumina [7506463] (imputed)	N
1623	chr9	136149228	136149229	rs505922	34777790	A Christensen M	2021-10-13	Ann Med Surg (Lond)	An assessment of the effect of the genotype on postoperative venous thromboembolism risk in 140,831 surgical patients.	Venous thromboembolism	6,260 cases, 355,414 controls	NA	9q34.2		rs505922-?	NR	6E-59				Affymetrix [254068]	N
1623	chr9	136149228	136149229	rs505922	34777790	A Christensen M	2021-10-13	Ann Med Surg (Lond)	An assessment of the effect of the genotype on postoperative venous thromboembolism risk in 140,831 surgical patients.	Postoperative venous thromboembolism	799 cases, 140,032 controls	NA	9q34.2		rs505922-?	NR	5E-7				Affymetrix [254068]	N
1623	chr9	136149228	136149229	rs505922	34601942	van Zuydam NR	2021-10-04	Circ Genom Precis Med	Genome-Wide Association Study of Peripheral Artery Disease.	Peripheral artery disease	12,086 European ancestry cases, 449,548 European ancestry controls	31,307 cases, 211,753 controls, 3,164 East Asian ancestry cases, 20,134 East Asian ancestry controls	9q34.2		rs505922-C	0.66	1E-10		1.06	[1.04-1.08]	Affymetrix, Illumina [NR] (imputed)	N
1623	chr9	136149228	136149229	rs505922	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Triglycerides	429,011 European ancestry individuals	NA	9q34.2		rs505922-C	0.32	8E-10		0.013	mmol/L decrease	NR [NR] (imputed)	N
1623	chr9	136149228	136149229	rs505922	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Sex hormone-binding globulin levels	389,354 European ancestry individuals	NA	9q34.2		rs505922-C	0.32	5E-6		0.009	nmol/L decrease	NR [NR] (imputed)	N
1623	chr9	136149228	136149229	rs505922	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	9q34.2		rs505922-C	0.32	7E-120				NR [NR] (imputed)	N
1623	chr9	136149228	136149229	rs505922	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	High density lipoprotein cholesterol levels	392,965 European ancestry individuals	NA	9q34.2		rs505922-C	0.32	7E-11		0.013	mmol/L increase	NR [NR] (imputed)	N
1623	chr9	136149228	136149229	rs505922	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	9q34.2		rs505922-C	0.32	2E-8		0.009	% increase	NR [NR] (imputed)	N
1623	chr9	136149228	136149229	rs505922	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Aspartate aminotransferase levels	424,778 European ancestry individuals	NA	9q34.2		rs505922-C	0.32	3E-43		0.03	U/L decrease	NR [NR] (imputed)	N
1623	chr9	136149228	136149229	rs505922	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Alanine aminotransferase levels	429,203 European ancestry individuals	NA	9q34.2		rs505922-C	0.32	2E-34		0.026	U/L increase	NR [NR] (imputed)	N
1623	chr9	136149228	136149229	rs505922	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	9q34.2	ABO	rs505922-C	0.317219	6E-12		0.031775612	[0.023-0.041] unit increase	Affymetrix [93095623] (imputed)	N
1623	chr9	136149228	136149229	rs505922	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	9q34.2	ABO	rs505922-C	0.317123	3E-10		0.029051643	[0.02-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
1623	chr9	136149228	136149229	rs505922	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q34.2	NR	rs505922-C	0.338918	4E-110				Affymetrix, Illumina [23467995] (imputed)	N
1623	chr9	136149228	136149229	rs505922	32492067	Ruffieux H	2020-06-03	PLoS Comput Biol	A fully joint Bayesian quantitative trait locus mapping of human protein abundance in plasma.	Protein quantitative trait loci	394 European ancestry individuals	548 European ancestry individuals	9q34.2	NR	rs505922-?	NR	2E-40	(DC-SIGN)			Illumina [~ 4000000] (imputed)	N
1623	chr9	136149228	136149229	rs505922	31285632	Klarin D	2019-07-08	Nat Med	Genome-wide association study of peripheral artery disease in the Million Veteran Program.	Peripheral artery disease	24,009 European ancestry cases, 150,983 European ancestry controls, 5,373 African ancestry cases, 42,485 African ancestry controls, 1,925 Hispanic cases, 18,285 Hispanic controls	5,117 European ancestry cases, 389,291 European ancestry controls	9q34.2	ABO	rs505922-C	0.3371	7E-11		1.06	[1.04-1.07]	Affymetrix [at least 20323458] (imputed)	N
1623	chr9	136149228	136149229	rs505922	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	9q34.2	ABO	rs505922-C	0.3317	4E-12		1.05	[1.03-1.06]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1623	chr9	136149228	136149229	rs505922	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q34.2	ABO	rs505922-C	0.313	1E-301	(CD209 antigen, CD209.3029.52.2)	0.83	[0.79-0.87] unit increase	Affymetrix [10572788] (imputed)	N
1623	chr9	136149228	136149229	rs505922	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q34.2	ABO	rs505922-C	0.313	1E-1828	(Histo-blood group ABO system transferase, ABO.9253.52.3)	1.3	[1.28-1.32] unit increase	Affymetrix [10572788] (imputed)	N
1623	chr9	136149228	136149229	rs505922	29422604	Klein AP	2018-02-08	Nat Commun	Genome-wide meta-analysis identifies five new susceptibility loci for pancreatic cancer.	Pancreatic cancer	9,040 European ancestry cases, 12,496 European ancestry controls	up to 2,737 cases, up to 4,752 controls	9q34.2	ABO	rs505922-C	0.35	7E-27	(EA)	1.27	[1.22-1.31]	Illumina [11381182] (imputed)	N
1623	chr9	136149228	136149229	rs505922	29358691	Bonas-Guarch S	2018-01-22	Nat Commun	Re-analysis of public genetic data reveals a rare X-chromosomal variant associated with type 2 diabetes.	Type 2 diabetes	19,693 European ancestry cases, 107,308 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls		9q34.2	ABO	rs505922-C	NR	5E-8		1.06	[1.04-1.09]	Affymetrix, Illumina [1918233] (imputed)	N
1623	chr9	136149228	136149229	rs505922	28495826	Williams SR	2017-06-01	Stroke	Genetic Drivers of von Willebrand Factor Levels in an Ischemic Stroke Population and Association With Risk for Recurrent Stroke.	vWF levels in ischaemic stroke and hyperhomocysteinaemia	1,931 European and unknown ancestry individuals	NA	9q34.2	ABO, OBP2B	rs505922-C	NR	2E-30		0.3315	[0.28-0.39] unit decrease	NR [NR] (imputed)	N
1623	chr9	136149228	136149229	rs505922	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	9q34.2	ABO	rs505922-C	0.3544177	8E-86	(CD209 antigen)	0.8177	[0.74-0.89] unit increase	Affymetrix [509946]	N
1623	chr9	136149228	136149229	rs505922	27897004	Verma SS	2016-01-01	Pac Symp Biocomput	IDENTIFYING GENETIC ASSOCIATIONS WITH VARIABILITY IN METABOLIC HEALTH AND BLOOD COUNT LABORATORY VALUES: DIVING INTO THE QUANTITATIVE TRAITS BY LEVERAGING LONGITUDINAL DATA FROM AN EHR.	Clinical laboratory measurements	17,347 European ancestry individuals	17,348 European ancestry individuals	9q34.2	ABO	rs505922-?		8E-65	(alkaline phosphatase)			Illumina [629274]	N
1623	chr9	136149228	136149229	rs505922	26098869	Childs EJ	2015-06-22	Nat Genet	Common variation at 2p13.3, 3q29, 7p13 and 17q25.1 associated with susceptibility to pancreatic cancer.	Pancreatic cancer	7,638 cases, 7,364 controls	2,287 cases, 4,205 controls	9q34.2	ABO	rs505922-?	NR	2E-13		1.27	[1.19-1.35]	Illumina [866891] (imputed)	N
1623	chr9	136149228	136149229	rs505922	23612905	Zhao SX	2013-04-29	Hum Mol Genet	Robust evidence for five new Graves' disease risk loci from a staged genome-wide association analysis.	Graves' disease	1,442 Han Chinese ancestry cases, 1,468 Han Chinese ancestry controls	6,358 Han Chinese ancestry cases, 6,722 Han Chinese ancestry controls	9q34.2	ABO	rs505922-?	0.53	2E-10		1.14	[1.1-1.19]	Illumina [483947]	N
1623	chr9	136149228	136149229	rs505922	23381943	Williams FM	2013-01-01	Ann Neurol	Ischemic stroke is associated with the ABO locus: the EuroCLOT study.	End-stage coagulation	2,100 European ancestry individuals	NA	9q34.2	ABO	rs505922-T	0.68	5E-57	(vWF)	0.561	[0.49-0.63] unit decrease	Illumina [NR] (imputed)	N
1623	chr9	136149228	136149229	rs505922	23263489	Huyghe JR	2012-12-23	Nat Genet	Exome array analysis identifies new loci and low-frequency variants influencing insulin processing and secretion.	Insulin disposition index	up to 8,229 Finnish ancestry non-diabetic individuals	NA	9q34.2	ABO	rs505922-C	0.471	4E-9		0.038	[0.026-0.05] unit decrease	Illumina [242071]	N
1623	chr9	136149228	136149229	rs505922	22387998	Tanikawa C	2012-03-04	Nat Genet	A genome-wide association study identifies two susceptibility loci for duodenal ulcer in the Japanese population.	Duodenal ulcer	1,043 Japanese ancestry cases, 21,694 Japanese ancestry controls	5,992 Japanese ancestry cases, 3,629 Japanese ancestry controls	9q34.2	ABO	rs505922-T	0.54	1E-10	(Recessive)	1.32	[NR]	Illumina [480327]	N
1623	chr9	136149228	136149229	rs505922	21980494	Germain M	2011-09-27	PLoS One	Genetics of venous thrombosis: insights from a new genome wide association study.	Venous thromboembolism	1,542 European ancestry cases, 1,110 European ancestry controls	NA	9q34.2	ABO	rs505922-C	0.43	1E-34		1.92	[NR]	Illumina [481002]	N
1623	chr9	136149228	136149229	rs505922	21841780	Chu X	2011-08-14	Nat Genet	A genome-wide association study identifies two new risk loci for Graves' disease.	Graves' disease	1,468 Chinese ancestry cases, 1,490 Chinese ancestry controls	3,994 Chinese ancestry cases, 3,510 Chinese ancestry controls	9q34.2	ABO	rs505922-T	0.53	8E-6		1.13	[1.07-1.20]	Illumina [486049]	N
1623	chr9	136149228	136149229	rs505922	19648918	Amundadottir L	2009-08-02	Nat Genet	Genome-wide association study identifies variants in the ABO locus associated with susceptibility to pancreatic cancer.	Pancreatic cancer	1,771 European ancestry cases, 1,805 European ancestry controls	2,120 European ancestry cases, 2,127 European ancestry controls	9q34.2	ABO	rs505922-C	0.35	5E-8		1.2	[1.12-1.28]	Illumina [558542]	N
1623	chr9	136149228	136149229	rs505922	19278955	Tregouet DA	2009-03-10	Blood	Common susceptibility alleles are unlikely to contribute as strongly as the FV and ABO loci to VTE risk: results from a GWAS approach.	Venous thromboembolism	419 European ancestry cases, 1,228 European ancestry controls	1,757 European ancestry cases, 1,480 European ancestry controls	9q34.2	ABO	rs505922-C	0.35	4E-15		1.81	[1.56-2.11]	Illumina [291872]	N
1623	chr9	136149228	136149229	rs505922	18464913	Melzer D	2008-05-09	PLoS Genet	A genome-wide association study identifies protein quantitative trait loci (pQTLs).	Protein quantitative trait loci	1,200 European ancestry individuals	up to 4,590 European ancestry individuals	9q34.2	ABO	rs505922-?	0.34	7E-40	(TNFA)			Illumina [496032]	N
1623	chr9	136149398	136149399	rs507666	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total concentration of lipoprotein particles	115,082 European ancestry individuals	NA	9q34.2		rs507666-G	0.816131	3E-13		0.0366263	[0.027-0.046] unit decrease	NR [11722792] (imputed)	N
1623	chr9	136149398	136149399	rs507666	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Sphingomyelin levels	115,006 European ancestry individuals	NA	9q34.2		rs507666-G	0.816131	5E-22		0.0481325	[0.038-0.058] unit decrease	NR [11722792] (imputed)	N
1623	chr9	136149398	136149399	rs507666	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Pyruvate levels	114,749 European ancestry individuals	NA	9q34.2		rs507666-G	0.816173	1E-10		0.0344912	[0.024-0.045] unit decrease	NR [11722792] (imputed)	N
1623	chr9	136149398	136149399	rs507666	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	9q34.2		rs507666-G	0.816131	1E-8		0.0294848	[0.019-0.04] unit increase	NR [11722792] (imputed)	N
1623	chr9	136149398	136149399	rs507666	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	9q34.2		rs507666-G	0.816131	8E-10		0.0310857	[0.021-0.041] unit decrease	NR [11722792] (imputed)	N
1623	chr9	136149398	136149399	rs507666	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in IDL	115,082 European ancestry individuals	NA	9q34.2		rs507666-G	0.816131	3E-36		0.0648766	[0.055-0.075] unit decrease	NR [11722792] (imputed)	N
1623	chr9	136149398	136149399	rs507666	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of HDL particles	115,082 European ancestry individuals	NA	9q34.2		rs507666-G	0.816131	1E-8		0.0285992	[0.019-0.038] unit decrease	NR [11722792] (imputed)	N
1623	chr9	136149398	136149399	rs507666	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	9q34.2		rs507666-G	0.816131	6E-16		0.0404394	[0.031-0.05] unit decrease	NR [11722792] (imputed)	N
1623	chr9	136149398	136149399	rs507666	35115690	Lopera-Maya EA	2022-02-03	Nat Genet	Effect of host genetics on the gut microbiome in 7,738 participants of the Dutch Microbiome Project.	Gut bacterial pathway abundance (LACTOSECAT.PWY..lactose.and.galactose.degradation.I)	7,738 European ancestry individuals	NA	9q34.2		rs507666-G	0.822397563676633	5E-15		0.16988954	[0.13-0.21] unit increase	Illumina [5584686] (imputed)	N
1623	chr9	136149398	136149399	rs507666	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SEMA6A	5,365 Icelandic ancestry individuals	NA	9q34.2		rs507666-A	0.1214	5E-21		0.265341	[0.21-0.32] unit decrease	Illumina [7506463] (imputed)	N
1623	chr9	136149398	136149399	rs507666	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SELP	5,364 Icelandic ancestry individuals	NA	9q34.2		rs507666-A	0.1214	4E-28		0.316568	[0.26-0.37] unit decrease	Illumina [7506463] (imputed)	N
1623	chr9	136149398	136149399	rs507666	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ROBO4	5,359 Icelandic ancestry individuals	NA	9q34.2		rs507666-A	0.1214	4E-258		0.863222	[0.81-0.91] unit decrease	Illumina [7506463] (imputed)	N
1623	chr9	136149398	136149399	rs507666	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MET	5,363 Icelandic ancestry individuals	NA	9q34.2		rs507666-A	0.1214	8E-18		0.246997	[0.19-0.3] unit decrease	Illumina [7506463] (imputed)	N
1623	chr9	136149398	136149399	rs507666	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein L1CAM	5,361 Icelandic ancestry individuals	NA	9q34.2		rs507666-A	0.1214	3E-22		0.276578	[0.22-0.33] unit decrease	Illumina [7506463] (imputed)	N
1623	chr9	136149398	136149399	rs507666	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein KIN	5,358 Icelandic ancestry individuals	NA	9q34.2		rs507666-A	0.1214	2E-54		0.427486	[0.37-0.48] unit decrease	Illumina [7506463] (imputed)	N
1623	chr9	136149398	136149399	rs507666	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein KDR	5,361 Icelandic ancestry individuals	NA	9q34.2		rs507666-A	0.1214	3E-110		0.611342	[0.56-0.67] unit decrease	Illumina [7506463] (imputed)	N
1623	chr9	136149398	136149399	rs507666	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein INSR	5,356 Icelandic ancestry individuals	NA	9q34.2		rs507666-A	0.1214	5E-165		0.718466	[0.67-0.77] unit decrease	Illumina [7506463] (imputed)	N
1623	chr9	136149398	136149399	rs507666	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL6ST	5,365 Icelandic ancestry individuals	NA	9q34.2		rs507666-A	0.1214	9E-16		0.225768	[0.17-0.28] unit decrease	Illumina [7506463] (imputed)	N
1623	chr9	136149398	136149399	rs507666	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL3RA	5,365 Icelandic ancestry individuals	NA	9q34.2		rs507666-A	0.1214	5E-191		0.756935	[0.71-0.81] unit decrease	Illumina [7506463] (imputed)	N
1623	chr9	136149398	136149399	rs507666	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IGF1R	5,359 Icelandic ancestry individuals	NA	9q34.2		rs507666-A	0.1214	3E-23		0.272866	[0.22-0.33] unit decrease	Illumina [7506463] (imputed)	N
1623	chr9	136149398	136149399	rs507666	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ICAM5	5,368 Icelandic ancestry individuals	NA	9q34.2		rs507666-A	0.1214	1E-79		0.533946	[0.48-0.59] unit decrease	Illumina [7506463] (imputed)	N
1623	chr9	136149398	136149399	rs507666	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ICAM5	5,366 Icelandic ancestry individuals	NA	9q34.2		rs507666-A	0.1214	9E-32		0.336001	[0.28-0.39] unit decrease	Illumina [7506463] (imputed)	N
1623	chr9	136149398	136149399	rs507666	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ICAM2	5,350 Icelandic ancestry individuals	NA	9q34.2		rs507666-A	0.1214	2E-21		0.258943	[0.21-0.31] unit decrease	Illumina [7506463] (imputed)	N
1623	chr9	136149398	136149399	rs507666	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ICAM1	5,366 Icelandic ancestry individuals	NA	9q34.2		rs507666-A	0.1214	1E-17		0.248888	[0.19-0.31] unit decrease	Illumina [7506463] (imputed)	N
1623	chr9	136149398	136149399	rs507666	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FLT4	5,365 Icelandic ancestry individuals	NA	9q34.2		rs507666-A	0.1214	5E-90		0.566551	[0.51-0.62] unit decrease	Illumina [7506463] (imputed)	N
1623	chr9	136149398	136149399	rs507666	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein EPHA4	5,365 Icelandic ancestry individuals	NA	9q34.2		rs507666-A	0.1214	2E-95		0.560436	[0.51-0.61] unit decrease	Illumina [7506463] (imputed)	N
1623	chr9	136149398	136149399	rs507666	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ENG	5,361 Icelandic ancestry individuals	NA	9q34.2		rs507666-A	0.1214	3E-63		0.466851	[0.41-0.52] unit decrease	Illumina [7506463] (imputed)	N
1623	chr9	136149398	136149399	rs507666	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CDH5	5,365 Icelandic ancestry individuals	NA	9q34.2		rs507666-A	0.1214	9E-22		0.270158	[0.21-0.33] unit decrease	Illumina [7506463] (imputed)	N
1623	chr9	136149398	136149399	rs507666	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ACE	5,362 Icelandic ancestry individuals	NA	9q34.2		rs507666-A	0.1214	9E-38		0.368046	[0.31-0.42] unit decrease	Illumina [7506463] (imputed)	N
1623	chr9	136149398	136149399	rs507666	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	200,622 European ancestry individuals	NA	9q34.2	ABO	rs507666-A	0.1956	7E-17		0.0164	[0.012-0.021] unit increase	Affymetrix, Illumina [34064007] (imputed)	N
1623	chr9	136149398	136149399	rs507666	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	9q34.2	NR	rs507666-A	NR	9E-14		0.0231	[0.017-0.029] unit increase	Affymetrix [9000000] (imputed)	N
1623	chr9	136149398	136149399	rs507666	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	9q34.2	NR	rs507666-A	NR	1E-12		0.022	[0.016-0.028] unit decrease	Affymetrix [9000000] (imputed)	N
1623	chr9	136149398	136149399	rs507666	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	9q34.2	NR	rs507666-A	NR	4E-149		0.0806	[0.075-0.087] unit increase	Affymetrix [9000000] (imputed)	N
1623	chr9	136149398	136149399	rs507666	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	9q34.2	NR	rs507666-A	NR	6E-15		0.0243	[0.018-0.03] unit decrease	Affymetrix [9000000] (imputed)	N
1623	chr9	136149398	136149399	rs507666	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	9q34.2	NR	rs507666-A	NR	5E-2658		0.3372	[0.33-0.34] unit decrease	Affymetrix [9000000] (imputed)	N
1623	chr9	136149398	136149399	rs507666	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	9q34.2	NR	rs507666-A	NR	2E-13		0.0239	[0.018-0.03] unit increase	Affymetrix [9000000] (imputed)	N
1623	chr9	136149398	136149399	rs507666	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	9q34.2	NR	rs507666-A	NR	1E-157		0.083	[0.077-0.089] unit increase	Affymetrix [9000000] (imputed)	N
1623	chr9	136149398	136149399	rs507666	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	9q34.2	NR	rs507666-A	NR	4E-13		0.0236	[0.017-0.03] unit increase	Affymetrix [9000000] (imputed)	N
1623	chr9	136149398	136149399	rs507666	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	9q34.2	NR	rs507666-A	NR	5E-68		0.0554	[0.049-0.062] unit increase	Affymetrix [9000000] (imputed)	N
1623	chr9	136149398	136149399	rs507666	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	9q34.2	NR	rs507666-A	NR	3E-42		0.0422	[0.036-0.048] unit increase	Affymetrix [9000000] (imputed)	N
1623	chr9	136149398	136149399	rs507666	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	9q34.2	NR	rs507666-A	NR	5E-13		0.0224	[0.016-0.028] unit increase	Affymetrix [9000000] (imputed)	N
1623	chr9	136149398	136149399	rs507666	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	9q34.2	NR	rs507666-A	NR	2E-18		0.0295	[0.023-0.036] unit decrease	Affymetrix [9000000] (imputed)	N
1623	chr9	136149398	136149399	rs507666	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	9q34.2	NR	rs507666-A	NR	6E-13		0.0224	[0.016-0.028] unit decrease	Affymetrix [9000000] (imputed)	N
1623	chr9	136149398	136149399	rs507666	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	9q34.2	NR	rs507666-A	NR	3E-26		0.0329	[0.027-0.039] unit increase	Affymetrix [9000000] (imputed)	N
1623	chr9	136149398	136149399	rs507666	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	9q34.2	NR	rs507666-A	NR	1E-20		0.0302	[0.024-0.036] unit increase	Affymetrix [9000000] (imputed)	N
1623	chr9	136149398	136149399	rs507666	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	9q34.2	NR	rs507666-A	NR	1E-109		0.0691	[0.063-0.075] unit decrease	Affymetrix [9000000] (imputed)	N
1623	chr9	136149398	136149399	rs507666	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	9q34.2	NR	rs507666-A	NR	5E-58		0.0499	[0.044-0.056] unit decrease	Affymetrix [9000000] (imputed)	N
1623	chr9	136149398	136149399	rs507666	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	9q34.2	NR	rs507666-A	NR	4E-91		0.0629	[0.057-0.069] unit increase	Affymetrix [9000000] (imputed)	N
1623	chr9	136149398	136149399	rs507666	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	9q34.2	NR	rs507666-A	NR	2E-22		0.0317	[0.025-0.038] unit increase	Affymetrix [9000000] (imputed)	N
1623	chr9	136149398	136149399	rs507666	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	9q34.2	NR	rs507666-A	NR	3E-12		0.0216	[0.016-0.028] unit increase	Affymetrix [9000000] (imputed)	N
1623	chr9	136149398	136149399	rs507666	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Platelet endothelial cell adhesion molecule levels	21,758 European ancestry individuals	9,173 individuals	9q34.2		rs507666-A	0.2	2E-648		0.5304	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1623	chr9	136149398	136149399	rs507666	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	E-selectin levels	21,758 European ancestry individuals	9,173 individuals	9q34.2		rs507666-A	0.2	4E-2436		0.8771	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1623	chr9	136149398	136149399	rs507666	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	9q34.2	ABO	rs507666-?	NR	2E-20		0.055458	[0.044-0.067] unit increase	Illumina [4804024] (imputed)	N
1623	chr9	136149398	136149399	rs507666	32492067	Ruffieux H	2020-06-03	PLoS Comput Biol	A fully joint Bayesian quantitative trait locus mapping of human protein abundance in plasma.	Protein quantitative trait loci	394 European ancestry individuals	548 European ancestry individuals	9q34.2	NR	rs507666-?	NR	2E-62	(sE-Selectin)			Illumina [~ 4000000] (imputed)	N
1623	chr9	136149398	136149399	rs507666	32469254	Matsunaga H	2020-05-29	Circ Genom Precis Med	Transethnic Meta-analysis of Genome-wide Association Studies Identifies Three New Loci and Characterizes Population-specific Differences for Coronary Artery Disease.	Coronary artery disease	15,302 Japanese ancestry cases, 36,140 Japanese ancestry controls	NA	9q34.2	ABO	rs507666-A	0.42	7E-10		1.14	[1.09-1.19]	Illumina [5932413] (imputed)	N
1623	chr9	136149398	136149399	rs507666	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	9q34.2	NR	rs507666-A	0.1859	3E-9		1.046	[1.031-1.061]	Affymetrix [15688218] (imputed)	N
1623	chr9	136149398	136149399	rs507666	31320639	Hillary RF	2019-07-18	Nat Commun	Genome and epigenome wide studies of neurological protein biomarkers in the Lothian Birth Cohort 1936.	Neurological blood protein biomarker levels	750 European ancestry individuals	NA	9q34.2	ABO	rs507666-A	0.1316	5E-12	(gal-8)	0.52713	[0.38-0.68] unit decrease	Illumina [8683751] (imputed)	N
1623	chr9	136149398	136149399	rs507666	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	9q34.2	NR	rs507666-?	NR	1E-14		3.665804	[2.73-4.6] unit increase	Illumina [32003504] (imputed)	N
1623	chr9	136149398	136149399	rs507666	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	9q34.2	NR	rs507666-?	NR	4E-15		3.361036	[2.52-4.2] unit increase	Illumina [31808917] (imputed)	N
1623	chr9	136149398	136149399	rs507666	30670697	Kilpelainen TO	2019-01-22	Nat Commun	Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity.	LDL cholesterol x physical activity interaction (2df test)	7,260 African American inactive individuals, 12,761 African American active individuals, 2,740 Asian ancestry inactive individuals, 3,615 Asian ancestry active individuals, 22,378 European ancestry inactive individuals, 55,310 European ancestry active individuals, 2,163 Hispanic or Latin American inactive individuals, 3,461 Hispanic or Latin American active individuals	571 African American inactive individuals, 1,521 African American active individuals, 1,217 South African Black ancestry inactive individuals, 389 South African Black ancestry active individuals, 2,495 East Asian ancestry inactive individuals, 1,947 East Asian ancestry active individuals,  724 South Asian ancestry inactive individuals, 1,425 South Asian ancestry active individuals,  33,796 European ancestry inactive individuals, 50,812 European ancestry active individuals, 2,578 Hispanic inactive individuals, 8,661 Hispanic active individuals	9q34.2	NR	rs507666-A	0.1853	1E-57				Affymetrix, Illumina [at least 2500000] (imputed)	N
1623	chr9	136149398	136149399	rs507666	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q34.2	ABO	rs507666-A	0.179	5E-80	(Insulin receptor, INSR.3448.13.2)	0.58	[0.52-0.64] unit decrease	Affymetrix [10572788] (imputed)	N
1623	chr9	136149398	136149399	rs507666	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q34.2	ABO	rs507666-A	0.179	2E-17	(Intercellular adhesion molecule 1, ICAM1.4342.10.3)	0.27	[0.21-0.33] unit decrease	Affymetrix [10572788] (imputed)	N
1623	chr9	136149398	136149399	rs507666	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9q34.2	NR	rs507666-G	NR	4E-52		0.081	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1623	chr9	136149398	136149399	rs507666	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9q34.2	NR	rs507666-G	0.831	1E-10	(Hispanic)	0.129	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1623	chr9	136149398	136149399	rs507666	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9q34.2	NR	rs507666-G	0.806	9E-41	(EA)	0.078	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1623	chr9	136149398	136149399	rs507666	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9q34.2	NR	rs507666-G	NR	1E-63		0.092	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1623	chr9	136149398	136149399	rs507666	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9q34.2	NR	rs507666-G	0.831	2E-14	(Hispanic)	0.155	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1623	chr9	136149398	136149399	rs507666	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9q34.2	NR	rs507666-G	0.806	5E-48	(EA)	0.087	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1623	chr9	136149398	136149399	rs507666	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	9q34.2	ABO	rs507666-A	0.1918	5E-20		0.0734	[0.058-0.089] unit increase	NR [8041861] (imputed)	N
1623	chr9	136149398	136149399	rs507666	28714975	Nelson CP	2017-07-17	Nat Genet	Association analyses based on false discovery rate implicate new loci for coronary artery disease.	Coronary artery disease (myocardial infarction, percutaneous transluminal coronary angioplasty, coronary artery bypass grafting, angina or chromic ischemic heart disease)	18,467 European and unknown ancestry cases, 45,264 European and unknown ancestry controls	57,347 European and unknown ancestry cases, 219,521 European and unknown ancestry controls	9q34.2	ABO	rs507666-A	0.192	1E-12		1.08	[1.06-1.10]	Affymetrix [9149595] (imputed)	N
1623	chr9	136149398	136149399	rs507666	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	9q34.2	NR	rs507666-?	NR	8E-118	(EA, E-Selectin)			Affymetrix [509946]	N
1623	chr9	136149398	136149399	rs507666	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	9q34.2	ABO	rs507666-G		8E-6		0.145	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1623	chr9	136149398	136149399	rs507666	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	9q34.2	ABO	rs507666-G		2E-8		0.169	unit increase	Affymetrix [at least 2696785] (imputed)	N
1623	chr9	136149398	136149399	rs507666	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	9q34.2	NR	rs507666-?		5E-15	(CDH1)	0.3397	[NR] unit decrease	Illumina [NR]	N
1623	chr9	136149398	136149399	rs507666	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	9q34.2	NR	rs507666-?		2E-104	(SELE)	0.9406	[NR] unit decrease	Illumina [NR]	N
1623	chr9	136149398	136149399	rs507666	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	9q34.2	NR	rs507666-?		1E-58	(PECAM1)	0.641	[NR] unit decrease	Illumina [NR]	N
1623	chr9	136149398	136149399	rs507666	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	Cholesterol, total	up to 62,166 European ancestry individuals	NA	9q34.2	ABO	rs507666-A	0.18	2E-18		0.067	[0.051-0.083] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
1623	chr9	136149398	136149399	rs507666	25147954	Enroth S	2014-08-22	Nat Commun	Strong effects of genetic and lifestyle factors on biomarker variation and use of personalized cutoffs.	E-selectin levels	up to 653 individuals	up to 317 individuals	9q34.2	ABO	rs507666-A	0.14995	5E-16		0.55	[0.42-0.68] unit decrease	Illumina [4840842] (imputed)	N
1623	chr9	136149398	136149399	rs507666	24386095	Zhou L	2013-12-30	PLoS One	A genome wide association study identifies common variants associated with lipid levels in the Chinese population.	Lipid traits	3,451 Han Chinese ancestry individuals	8,830 Han Chinese ancestry individuals	9q34.2	ABO	rs507666-A	0.23	4E-11	(TC)	0.015	[0.0091-0.0209] mmol/L increase	Affymetrix, Illumina [up to 2249917] (imputed)	N
1623	chr9	136149398	136149399	rs507666	24386095	Zhou L	2013-12-30	PLoS One	A genome wide association study identifies common variants associated with lipid levels in the Chinese population.	Lipid traits	3,451 Han Chinese ancestry individuals	8,830 Han Chinese ancestry individuals	9q34.2	ABO	rs507666-A	0.23	2E-11	(LDL)	0.073	[0.044-0.102] mmol/L increase	Affymetrix, Illumina [up to 2249917] (imputed)	N
1623	chr9	136149398	136149399	rs507666	21533024	Pare G	2011-04-21	PLoS Genet	Genome-wide association analysis of soluble ICAM-1 concentration reveals novel associations at the NFKBIK, PNPLA3, RELA, and SH2B3 loci.	Soluble ICAM-1	22,435 European ancestry female individuals	9,813 individuals	9q34.2	ABO	rs507666-A	0.20	3E-91		17.3	[NR] ng/mL decrease	Illumina [334295]	N
1623	chr9	136149398	136149399	rs507666	18604267	Pare G	2008-07-04	PLoS Genet	Novel association of ABO histo-blood group antigen with soluble ICAM-1: results of a genome-wide association study of 6,578 women.	Soluble ICAM-1	4,570 European ancestry female individuals	2,008 European ancestry female individuals	9q34.2	ABO	rs507666-G	0.20	5E-29		17.73	[NR] umol/L decrease	Illumina [336108]	N
1623	chr9	136149499	136149500	rs529565	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Citrate levels	115,068 European ancestry individuals	NA	9q34.2		rs529565-T	0.683174	4E-11		0.0286148	[0.02-0.037] unit decrease	NR [11722792] (imputed)	N
1623	chr9	136149499	136149500	rs529565	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	9q34.2		rs529565-T	0.683	1E-18				Affymetrix [10369434] (imputed)	N
1623	chr9	136149499	136149500	rs529565	34202464	Wang M	2021-06-24	Genes (Basel)	Genomic Association vs. Serological Determination of ABO Blood Types in a Chinese Cohort, with Application in Mendelian Randomization.	ABO blood group (O vs non-O)	up to 356 Han Chinese ancestry individuals with O blood group, up to 622 Han Chinese ancestry individuals with non-O blood group	NA	9q34.2	ABO	rs529565-T	0.406	3E-48		4.0E-4	[NR]	Affymetrix [733907]	N
1623	chr9	136149499	136149500	rs529565	34202464	Wang M	2021-06-24	Genes (Basel)	Genomic Association vs. Serological Determination of ABO Blood Types in a Chinese Cohort, with Application in Mendelian Randomization.	ABO blood group (B vs O)	up to 235 Han Chinese ancestry individuals with B blood group, up to 356 Han Chinese ancestry individuals with O blood group	NA	9q34.2	ABO	rs529565-T	0.406	2E-46		1800.0	[NR]	Affymetrix [733907]	N
1623	chr9	136149499	136149500	rs529565	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	9q34.2	ABO	rs529565-C	0.317472	2E-29		0.026750587	[0.022-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
1623	chr9	136149499	136149500	rs529565	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	9q34.2	NR	rs529565-C	0.3648	8E-27		0.0415	[0.034-0.049] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1623	chr9	136149499	136149500	rs529565	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	9q34.2	ABO	rs529565-C	0.445	2E-10		1.04	[1.03-1.06]	Affymetrix, Illumina [11800000] (imputed)	N
1623	chr9	136149499	136149500	rs529565	26908601	Hinds DA	2016-02-09	Hum Mol Genet	Genome-wide association analysis of self-reported events in 6135 individuals and 252 827 controls identifies 8 loci associated with thrombosis.	Thrombosis	6,135 European ancestry cases, 252,827 European ancestry controls	NA	9q34.2	ABO	rs529565-C	0.3412	7E-63		1.3831259	[1.33-1.43]	Illumina [at least 560000] (imputed)	N
1623	chr9	136149499	136149500	rs529565	25772935	Germain M	2015-03-12	Am J Hum Genet	Meta-analysis of 65,734 individuals identifies TSPAN15 and SLC44A2 as two susceptibility loci for venous thromboembolism.	Venous thromboembolism	7,507 European ancestry cases, 52,632 European ancestry controls	3,009 European ancestry cases, 2,586 European ancestry controls	9q34.2	ABO	rs529565-C	0.354	4E-75		1.55	[1.48-1.63]	Affymetrix, Illumina [6751884] (imputed)	N
1623	chr9	136149580	136149581	rs630510	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	9q34.2	ABO	rs630510-A	0.4662978	2E-15	(Tyrosine-protein kinase receptor Tie-1, soluble)	0.3499	[0.27-0.43] unit decrease	Affymetrix [509946]	N
1623	chr9	136149709	136149710	rs8176643	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	9q34.2		rs8176643-A	NR	3E-22		0.0293	[0.023-0.035] unit increase	Affymetrix, Illumina [20535873] (imputed)	N
1623	chr9	136149709	136149710	rs8176643	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	9q34.2		rs8176643-A	NR	2E-39		0.0361	[0.031-0.041] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
1623	chr9	136149709	136149710	rs8176643	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	9q34.2		rs8176643-A	NR	3E-26		0.0323	[0.026-0.038] unit increase	Affymetrix, Illumina [20529698] (imputed)	N
1623	chr9	136149709	136149710	rs8176643	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q34.2	ABO	rs8176643-A	0.171	6E-12	(Mannosyl-oligosaccharide 1,2-alpha-mannosidase IB, MAN1A2.9077.10.3)	0.23	[0.17-0.29] unit increase	Affymetrix [10572788] (imputed)	N
1623	chr9	136149709	136149710	rs8176643	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q34.2	ABO	rs8176643-A	0.171	4E-24	(Toll-like receptor 4:Lymphocyte antigen 96 complex, TLR4.LY96.3647.49.4)	0.33	[0.27-0.39] unit decrease	Affymetrix [10572788] (imputed)	N
1623	chr9	136149709	136149710	rs8176643	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q34.2	ABO	rs8176643-A	0.171	2E-64	(Coagulation Factor VIII, F8.13499.30.3)	0.54	[0.48-0.6] unit increase	Affymetrix [10572788] (imputed)	N
1623	chr9	136149709	136149710	rs8176643	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q34.2	ABO	rs8176643-A	0.171	1E-162	(CD209 antigen, CD209.3029.52.2)	0.81	[0.75-0.87] unit increase	Affymetrix [10572788] (imputed)	N
1623	chr9	136149709	136149710	rs8176643	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	9q34.2	ABO	rs8176643-?	0.36	4E-11		1.06	[1.05-1.07]	Illumina [at least 560000] (imputed)	N
1623	chr9	136149709	136149710	rs8176643	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	9q34.2	ABO	rs8176643-A	0.1761	3E-71		0.0835811	[0.074-0.093] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1623	chr9	136149709	136149710	rs8176643	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	9q34.2	ABO	rs8176643-A	0.176	6E-64		0.07876705	[0.07-0.088] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1623	chr9	136149710	136149711	rs115478735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	VLDL cholesterol levels	115,082 European ancestry individuals	NA	9q34.2		rs115478735-A	0.816696	2E-18		0.0467808	[0.036-0.057] unit decrease	NR [11722792] (imputed)	N
1623	chr9	136149710	136149711	rs115478735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	9q34.2		rs115478735-A	0.816704	4E-52		0.080776	[0.07-0.091] unit increase	NR [11722792] (imputed)	N
1623	chr9	136149710	136149711	rs115478735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	9q34.2		rs115478735-A	0.817089	7E-27		0.0578536	[0.047-0.068] unit increase	NR [11722792] (imputed)	N
1623	chr9	136149710	136149711	rs115478735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very small VLDL	115,082 European ancestry individuals	NA	9q34.2		rs115478735-A	0.816696	2E-21		0.0498105	[0.04-0.06] unit decrease	NR [11722792] (imputed)	N
1623	chr9	136149710	136149711	rs115478735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small LDL	115,082 European ancestry individuals	NA	9q34.2		rs115478735-A	0.816696	3E-20		0.0493035	[0.039-0.06] unit decrease	NR [11722792] (imputed)	N
1623	chr9	136149710	136149711	rs115478735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium LDL	115,082 European ancestry individuals	NA	9q34.2		rs115478735-A	0.816696	2E-27		0.0581116	[0.048-0.069] unit decrease	NR [11722792] (imputed)	N
1623	chr9	136149710	136149711	rs115478735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large LDL	115,082 European ancestry individuals	NA	9q34.2		rs115478735-A	0.816696	2E-31		0.0617664	[0.051-0.072] unit decrease	NR [11722792] (imputed)	N
1623	chr9	136149710	136149711	rs115478735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in LDL	115,082 European ancestry individuals	NA	9q34.2		rs115478735-A	0.816696	8E-30		0.0603572	[0.05-0.071] unit decrease	NR [11722792] (imputed)	N
1623	chr9	136149710	136149711	rs115478735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in IDL	115,082 European ancestry individuals	NA	9q34.2		rs115478735-A	0.816696	1E-31		0.0605343	[0.05-0.071] unit decrease	NR [11722792] (imputed)	N
1623	chr9	136149710	136149711	rs115478735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total free cholesterol levels	115,082 European ancestry individuals	NA	9q34.2		rs115478735-A	0.816696	1E-26		0.0557416	[0.046-0.066] unit decrease	NR [11722792] (imputed)	N
1623	chr9	136149710	136149711	rs115478735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total esterified cholesterol levels	115,082 European ancestry individuals	NA	9q34.2		rs115478735-A	0.816696	1E-27		0.0562474	[0.046-0.066] unit decrease	NR [11722792] (imputed)	N
1623	chr9	136149710	136149711	rs115478735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol minus HDL-C levels	115,082 European ancestry individuals	NA	9q34.2		rs115478735-A	0.816696	8E-31		0.0613299	[0.051-0.072] unit decrease	NR [11722792] (imputed)	N
1623	chr9	136149710	136149711	rs115478735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol levels	115,082 European ancestry individuals	NA	9q34.2		rs115478735-A	0.816696	1E-27		0.0564204	[0.046-0.067] unit decrease	NR [11722792] (imputed)	N
1623	chr9	136149710	136149711	rs115478735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Remnant cholesterol (non-HDL, non-LDL -cholesterol)	115,082 European ancestry individuals	NA	9q34.2		rs115478735-A	0.816696	4E-29		0.0594489	[0.049-0.07] unit decrease	NR [11722792] (imputed)	N
1623	chr9	136149710	136149711	rs115478735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of linoleic acid to total fatty acids	115,006 European ancestry individuals	NA	9q34.2		rs115478735-A	0.816697	4E-10		0.0321528	[0.022-0.042] unit decrease	NR [11722792] (imputed)	N
1623	chr9	136149710	136149711	rs115478735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of apolipoprotein B to apolipoprotein A1 levels	115,082 European ancestry individuals	NA	9q34.2		rs115478735-A	0.816696	5E-15		0.0412036	[0.031-0.052] unit decrease	NR [11722792] (imputed)	N
1623	chr9	136149710	136149711	rs115478735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Polyunsaturated fatty acid levels	115,006 European ancestry individuals	NA	9q34.2		rs115478735-A	0.816697	3E-13		0.0377218	[0.028-0.048] unit decrease	NR [11722792] (imputed)	N
1623	chr9	136149710	136149711	rs115478735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	9q34.2		rs115478735-A	0.816696	9E-11		0.0334136	[0.023-0.044] unit increase	NR [11722792] (imputed)	N
1623	chr9	136149710	136149711	rs115478735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very small VLDL	115,082 European ancestry individuals	NA	9q34.2		rs115478735-A	0.816696	2E-18		0.0459204	[0.036-0.056] unit decrease	NR [11722792] (imputed)	N
1623	chr9	136149710	136149711	rs115478735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small LDL	115,082 European ancestry individuals	NA	9q34.2		rs115478735-A	0.816696	2E-15		0.0424046	[0.032-0.053] unit decrease	NR [11722792] (imputed)	N
1623	chr9	136149710	136149711	rs115478735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium VLDL	115,082 European ancestry individuals	NA	9q34.2		rs115478735-A	0.816696	1E-17		0.0456536	[0.035-0.056] unit decrease	NR [11722792] (imputed)	N
1623	chr9	136149710	136149711	rs115478735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium LDL	115,082 European ancestry individuals	NA	9q34.2		rs115478735-A	0.816696	3E-28		0.0590222	[0.049-0.07] unit decrease	NR [11722792] (imputed)	N
1623	chr9	136149710	136149711	rs115478735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large LDL	115,082 European ancestry individuals	NA	9q34.2		rs115478735-A	0.816696	5E-37		0.0673827	[0.057-0.078] unit decrease	NR [11722792] (imputed)	N
1623	chr9	136149710	136149711	rs115478735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in LDL	115,082 European ancestry individuals	NA	9q34.2		rs115478735-A	0.816696	5E-32		0.06282	[0.052-0.073] unit decrease	NR [11722792] (imputed)	N
1623	chr9	136149710	136149711	rs115478735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in IDL	115,082 European ancestry individuals	NA	9q34.2		rs115478735-A	0.816696	4E-31		0.0597755	[0.05-0.07] unit decrease	NR [11722792] (imputed)	N
1623	chr9	136149710	136149711	rs115478735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-6 fatty acid levels	115,006 European ancestry individuals	NA	9q34.2		rs115478735-A	0.816697	4E-16		0.0424072	[0.032-0.053] unit decrease	NR [11722792] (imputed)	N
1623	chr9	136149710	136149711	rs115478735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Linoleic acid levels	115,006 European ancestry individuals	NA	9q34.2		rs115478735-A	0.816697	3E-16		0.0427716	[0.032-0.053] unit decrease	NR [11722792] (imputed)	N
1623	chr9	136149710	136149711	rs115478735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	LDL cholesterol levels	115,082 European ancestry individuals	NA	9q34.2		rs115478735-A	0.816696	3E-30		0.0608301	[0.05-0.071] unit decrease	NR [11722792] (imputed)	N
1623	chr9	136149710	136149711	rs115478735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	9q34.2		rs115478735-A	0.817089	4E-18		0.0462328	[0.036-0.057] unit decrease	NR [11722792] (imputed)	N
1623	chr9	136149710	136149711	rs115478735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	9q34.2		rs115478735-A	0.816696	7E-26		0.0549926	[0.045-0.065] unit decrease	NR [11722792] (imputed)	N
1623	chr9	136149710	136149711	rs115478735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	9q34.2		rs115478735-A	0.816696	7E-30		0.0605995	[0.05-0.071] unit decrease	NR [11722792] (imputed)	N
1623	chr9	136149710	136149711	rs115478735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small LDL	115,082 European ancestry individuals	NA	9q34.2		rs115478735-A	0.816696	3E-25		0.0554033	[0.045-0.066] unit decrease	NR [11722792] (imputed)	N
1623	chr9	136149710	136149711	rs115478735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	9q34.2		rs115478735-A	0.816696	5E-23		0.052719	[0.042-0.063] unit decrease	NR [11722792] (imputed)	N
1623	chr9	136149710	136149711	rs115478735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	9q34.2		rs115478735-A	0.816696	1E-33		0.0644691	[0.054-0.075] unit decrease	NR [11722792] (imputed)	N
1623	chr9	136149710	136149711	rs115478735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large LDL	115,082 European ancestry individuals	NA	9q34.2		rs115478735-A	0.816696	1E-33		0.0634442	[0.053-0.074] unit decrease	NR [11722792] (imputed)	N
1623	chr9	136149710	136149711	rs115478735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in LDL	115,082 European ancestry individuals	NA	9q34.2		rs115478735-A	0.816696	3E-33		0.0635309	[0.053-0.074] unit decrease	NR [11722792] (imputed)	N
1623	chr9	136149710	136149711	rs115478735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very small VLDL particles	115,082 European ancestry individuals	NA	9q34.2		rs115478735-A	0.816696	9E-26		0.0551099	[0.045-0.065] unit decrease	NR [11722792] (imputed)	N
1623	chr9	136149710	136149711	rs115478735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small LDL particles	115,082 European ancestry individuals	NA	9q34.2		rs115478735-A	0.816696	4E-20		0.0491301	[0.039-0.06] unit decrease	NR [11722792] (imputed)	N
1623	chr9	136149710	136149711	rs115478735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium LDL particles	115,082 European ancestry individuals	NA	9q34.2		rs115478735-A	0.816696	6E-27		0.0575453	[0.047-0.068] unit decrease	NR [11722792] (imputed)	N
1623	chr9	136149710	136149711	rs115478735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large LDL particles	115,082 European ancestry individuals	NA	9q34.2		rs115478735-A	0.816696	3E-22		0.0515604	[0.041-0.062] unit decrease	NR [11722792] (imputed)	N
1623	chr9	136149710	136149711	rs115478735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of LDL particles	115,082 European ancestry individuals	NA	9q34.2		rs115478735-A	0.816696	4E-24		0.0541339	[0.044-0.065] unit decrease	NR [11722792] (imputed)	N
1623	chr9	136149710	136149711	rs115478735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of IDL particles	115,082 European ancestry individuals	NA	9q34.2		rs115478735-A	0.816696	6E-36		0.0661692	[0.056-0.077] unit decrease	NR [11722792] (imputed)	N
1623	chr9	136149710	136149711	rs115478735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Clinical LDL cholesterol levels	115,082 European ancestry individuals	NA	9q34.2		rs115478735-A	0.816696	9E-35		0.0653267	[0.055-0.076] unit decrease	NR [11722792] (imputed)	N
1623	chr9	136149710	136149711	rs115478735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	9q34.2		rs115478735-A	0.816696	5E-49		0.0774823	[0.067-0.088] unit decrease	NR [11722792] (imputed)	N
1623	chr9	136149710	136149711	rs115478735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	9q34.2		rs115478735-A	0.817089	2E-25		0.0560985	[0.046-0.067] unit decrease	NR [11722792] (imputed)	N
1623	chr9	136149710	136149711	rs115478735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very small VLDL	115,082 European ancestry individuals	NA	9q34.2		rs115478735-A	0.816696	7E-31		0.0594946	[0.049-0.07] unit decrease	NR [11722792] (imputed)	N
1623	chr9	136149710	136149711	rs115478735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small VLDL	115,082 European ancestry individuals	NA	9q34.2		rs115478735-A	0.816696	9E-29		0.0592746	[0.049-0.07] unit decrease	NR [11722792] (imputed)	N
1623	chr9	136149710	136149711	rs115478735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small LDL	115,082 European ancestry individuals	NA	9q34.2		rs115478735-A	0.816696	1E-22		0.052322	[0.042-0.063] unit decrease	NR [11722792] (imputed)	N
1623	chr9	136149710	136149711	rs115478735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium VLDL	115,082 European ancestry individuals	NA	9q34.2		rs115478735-A	0.816696	7E-37		0.0671431	[0.057-0.078] unit decrease	NR [11722792] (imputed)	N
1623	chr9	136149710	136149711	rs115478735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium LDL	115,082 European ancestry individuals	NA	9q34.2		rs115478735-A	0.816696	8E-26		0.0561564	[0.046-0.067] unit decrease	NR [11722792] (imputed)	N
1623	chr9	136149710	136149711	rs115478735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large LDL	115,082 European ancestry individuals	NA	9q34.2		rs115478735-A	0.816696	5E-29		0.0592251	[0.049-0.07] unit decrease	NR [11722792] (imputed)	N
1623	chr9	136149710	136149711	rs115478735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in VLDL	115,082 European ancestry individuals	NA	9q34.2		rs115478735-A	0.816696	1E-24		0.054701	[0.044-0.065] unit decrease	NR [11722792] (imputed)	N
1623	chr9	136149710	136149711	rs115478735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in LDL	115,082 European ancestry individuals	NA	9q34.2		rs115478735-A	0.816696	2E-28		0.0589739	[0.049-0.069] unit decrease	NR [11722792] (imputed)	N
1623	chr9	136149710	136149711	rs115478735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in IDL	115,082 European ancestry individuals	NA	9q34.2		rs115478735-A	0.816696	3E-30		0.0590565	[0.049-0.069] unit decrease	NR [11722792] (imputed)	N
1623	chr9	136149710	136149711	rs115478735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	9q34.2		rs115478735-A	0.817089	3E-26		0.056869	[0.046-0.067] unit decrease	NR [11722792] (imputed)	N
1623	chr9	136149710	136149711	rs115478735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	9q34.2		rs115478735-A	0.816696	7E-30		0.0588038	[0.049-0.069] unit decrease	NR [11722792] (imputed)	N
1623	chr9	136149710	136149711	rs115478735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	9q34.2		rs115478735-A	0.816696	1E-29		0.0602168	[0.05-0.071] unit decrease	NR [11722792] (imputed)	N
1623	chr9	136149710	136149711	rs115478735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small LDL	115,082 European ancestry individuals	NA	9q34.2		rs115478735-A	0.816696	2E-24		0.0546603	[0.044-0.065] unit decrease	NR [11722792] (imputed)	N
1623	chr9	136149710	136149711	rs115478735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	9q34.2		rs115478735-A	0.816696	6E-32		0.0626771	[0.052-0.073] unit decrease	NR [11722792] (imputed)	N
1623	chr9	136149710	136149711	rs115478735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	9q34.2		rs115478735-A	0.816696	1E-28		0.059509	[0.049-0.07] unit decrease	NR [11722792] (imputed)	N
1623	chr9	136149710	136149711	rs115478735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large LDL	115,082 European ancestry individuals	NA	9q34.2		rs115478735-A	0.816696	1E-30		0.0607708	[0.05-0.071] unit decrease	NR [11722792] (imputed)	N
1623	chr9	136149710	136149711	rs115478735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in IDL	115,082 European ancestry individuals	NA	9q34.2		rs115478735-A	0.816696	4E-32		0.0609484	[0.051-0.071] unit decrease	NR [11722792] (imputed)	N
1623	chr9	136149710	136149711	rs115478735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein B levels	115,082 European ancestry individuals	NA	9q34.2		rs115478735-A	0.816696	2E-26		0.0567209	[0.046-0.067] unit decrease	NR [11722792] (imputed)	N
1623	chr9	136149710	136149711	rs115478735	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	9q34.2		rs115478735-T	NR	1E-13		0.0211	[0.016-0.027] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
1623	chr9	136149710	136149711	rs115478735	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	9q34.2	SURF6	rs115478735-A	0.815989	9E-96		0.0558766	[0.051-0.061] unit decrease	Affymetrix [NR] (imputed)	N
1623	chr9	136149710	136149711	rs115478735	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	9q34.2	SURF6	rs115478735-A	0.815952	3E-53		0.0412279	[0.036-0.046] unit decrease	Affymetrix [NR] (imputed)	N
1623	chr9	136149710	136149711	rs115478735	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q34.2	ABO	rs115478735-T	0.178	8E-24	(Protein-tyrosine sulfotransferase 2, TPST2.8024.64.3)	0.32	[0.26-0.38] unit increase	Affymetrix [10572788] (imputed)	N
1623	chr9	136149710	136149711	rs115478735	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q34.2	ABO	rs115478735-T	0.178	1E-46	(Immunoglobulin superfamily containing leucine-rich repeat protein 2, ISLR2.13124.20.3)	0.45	[0.39-0.51] unit decrease	Affymetrix [10572788] (imputed)	N
1623	chr9	136149829	136149830	rs532436	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MET	5,365 Icelandic ancestry individuals	NA	9q34.2		rs532436-A	0.122	3E-46		0.404264	[0.35-0.46] unit decrease	Illumina [7506463] (imputed)	N
1623	chr9	136149829	136149830	rs532436	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LIFR	5,355 Icelandic ancestry individuals	NA	9q34.2		rs532436-A	0.122	5E-44		0.385482	[0.33-0.44] unit decrease	Illumina [7506463] (imputed)	N
1623	chr9	136149829	136149830	rs532436	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein JAG1	5,364 Icelandic ancestry individuals	NA	9q34.2		rs532436-A	0.122	5E-13		0.19852	[0.14-0.25] unit decrease	Illumina [7506463] (imputed)	N
1623	chr9	136149829	136149830	rs532436	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ISLR2	5,366 Icelandic ancestry individuals	NA	9q34.2		rs532436-A	0.122	8E-49		0.417916	[0.36-0.47] unit decrease	Illumina [7506463] (imputed)	N
1623	chr9	136149829	136149830	rs532436	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DPEP2	5,359 Icelandic ancestry individuals	NA	9q34.2		rs532436-A	0.122	1E-15		0.224058	[0.17-0.28] unit decrease	Illumina [7506463] (imputed)	N
1623	chr9	136149829	136149830	rs532436	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CD200	5,363 Icelandic ancestry individuals	NA	9q34.2		rs532436-A	0.122	3E-40		0.371668	[0.32-0.43] unit decrease	Illumina [7506463] (imputed)	N
1623	chr9	136149829	136149830	rs532436	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CD109	5,363 Icelandic ancestry individuals	NA	9q34.2		rs532436-A	0.122	7E-20		0.259876	[0.2-0.32] unit decrease	Illumina [7506463] (imputed)	N
1623	chr9	136149829	136149830	rs532436	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CCL25	5,366 Icelandic ancestry individuals	NA	9q34.2		rs532436-A	0.122	7E-12		0.201295	[0.14-0.26] unit decrease	Illumina [7506463] (imputed)	N
1623	chr9	136149829	136149830	rs532436	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein AMY2B	5,365 Icelandic ancestry individuals	NA	9q34.2		rs532436-A	0.122	8E-13		0.207754	[0.15-0.26] unit decrease	Illumina [7506463] (imputed)	N
1623	chr9	136149829	136149830	rs532436	34542150	Gergei I	2021-09-20	Hum Mol Genet	GWAS META-analysis followed by MENDELIAN randomisation revealed potential control mechanisms for circulating ?-klotho levels.	Circulating plasma alpha-Klotho levels	4,376 European ancestry individuals	NA	9q34.2	NR	rs532436-G	0.2399	6E-15		0.204	[0.15-0.25] z score increase	Affymetrix, Illumina [6439450] (imputed)	N
1623	chr9	136149829	136149830	rs532436	33893285	Guindo-Martinez M	2021-04-23	Nat Commun	The impact of non-additive genetic associations on age-related complex diseases.	Dyslipidemia	30,244 European ancestry cases, 26,393 European ancestry controls	NA	9q34.2		rs532436-A	0.194	8E-21		1.16		Affymetrix [15679186] (imputed)	N
1623	chr9	136149829	136149830	rs532436	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 10)	19,670 European ancestry individuals	NA	9q34.2		rs532436-?	NR	2E-11				NR [9705931] (imputed)	N
1623	chr9	136149829	136149830	rs532436	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	9q34.2		rs532436-?	NR	6E-9		0.0151343	[0.01-0.02] unit decrease	NR [6912294] (imputed)	N
1623	chr9	136149829	136149830	rs532436	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	9q34.2	SURF6	rs532436-G	0.815394	3E-21		0.0232183	[0.018-0.028] unit decrease	Affymetrix [NR] (imputed)	N
1623	chr9	136149829	136149830	rs532436	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	9q34.2	NR	rs532436-A	0.184388	2E-9		0.015051	[0.01-0.02] unit decrease	Affymetrix [16668957] (imputed)	N
1623	chr9	136149829	136149830	rs532436	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (antithrombotic agents)	67,653 European ancestry cases, 85,986 European ancestry controls	NA	9q34.2	ABO	rs532436-A	0.185935	2E-14		0.066341	[0.049-0.083] unit increase	Affymetrix [7288503] (imputed)	N
1623	chr9	136149829	136149830	rs532436	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	9q34.2	ABO	rs532436-A	0.181	2E-87		0.068	[0.061-0.075] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1623	chr9	136149829	136149830	rs532436	26343387	Nikpay M	2015-09-07	Nat Genet	A comprehensive 1,000 Genomes-based genome-wide association meta-analysis of coronary artery disease.	Myocardial infarction	27,509 European ancestry cases, 130 African American cases, 278 Hispanic American cases, 10,257 South Asian ancestry cases, 288 Lebanese ancestry cases, 1,687 East Asian ancestry cases, 99,121 European ancestry controls, 2,778 African American controls, 3,337 Hispanic American controls, 12,899 South Asian ancestry controls, 466 Lebanese ancestry controls, 7,709 East Asian ancestry controls	NA	9q34.2	ABO	rs532436-A	0.19	2E-17		1.12	[1.09-1.14]	Affymetrix, Illumina [8600000] (imputed)	N
1623	chr9	136151579	136151615	rs8176636	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA			rs8176636-T	0.276420144	3E-19		0.092784725	[0.073-0.113] unit increase	Illumina [13429980] (imputed)	N
1623	chr9	136151579	136151615	rs8176636	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	72,866 East Asian ancestry individuals	NA			rs8176636-T	0.279102	3E-22		0.0519333	[0.041-0.062] unit increase	Illumina [13461863] (imputed)	N
1623	chr9	136151579	136151615	rs8176636	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls			rs8176636-T	NR	5E-10		1.05	[1.03-1.06]	Affymetrix, Illumina [NR] (imputed)	N
1623	chr9	136151579	136151615	rs8176636	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls		ABO	rs8176636-?	0.2	1E-8	(EA)	1.03	[1.01-1.06] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
1623	chr9	136151805	136151806	rs600038	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic heart failure	14,262 European ancestry cases, 471,898 European ancestry controls, 10,540 East Asian ancestry cases, 168,186 East Asian ancestry controls	NA	9q34.2		rs600038-C	NR	1E-8		0.0648	[0.042-0.087] unit increase	Affymetrix, Illumina [25844553] (imputed)	N
1623	chr9	136151805	136151806	rs600038	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cholelithiasis	26,122 European ancestry cases, 461,431 European ancestry controls, 9,305 East Asian ancestry cases, 168,253 East Asian ancestry controls	NA	9q34.2		rs600038-C	NR	2E-10		0.0618	[0.043-0.081] unit increase	Affymetrix, Illumina [25844936] (imputed)	N
1623	chr9	136151805	136151806	rs600038	31919418	Shah S	2020-01-09	Nat Commun	Genome-wide association and Mendelian randomisation analysis provide insights into the pathogenesis of heart failure.	Heart failure	47,309 European ancestry cases, 930,014 European ancestry controls	NA	9q34.2	ABO, SURF1	rs600038-C	0.21	4E-9		1.06	[1.04-1.08]	Affymetrix, Illumina [8246881] (imputed)	N
1623	chr9	136153874	136153875	rs651007	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Stem cell factor levels	21,758 European ancestry individuals	9,173 individuals	9q34.2		rs651007-T	0.22	9E-12		0.0715	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1623	chr9	136153874	136153875	rs651007	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9q34.2	NR	rs651007-C	NR	3E-48		0.074	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1623	chr9	136153874	136153875	rs651007	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9q34.2	NR	rs651007-C	0.812	2E-10	(Hispanic)	0.122	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1623	chr9	136153874	136153875	rs651007	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9q34.2	NR	rs651007-C	0.786	3E-36	(EA)	0.07	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1623	chr9	136153874	136153875	rs651007	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9q34.2	NR	rs651007-C	NR	3E-59		0.085	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1623	chr9	136153874	136153875	rs651007	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9q34.2	NR	rs651007-C	0.812	2E-14	(Hispanic)	0.148	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1623	chr9	136153874	136153875	rs651007	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9q34.2	NR	rs651007-C	0.791	7E-7	(East Asian)	0.097	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1623	chr9	136153874	136153875	rs651007	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9q34.2	NR	rs651007-C	0.786	5E-43	(EA)	0.079	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1623	chr9	136153874	136153875	rs651007	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	9q34.2	ABO	rs651007-T	NR	4E-7	(EA, Intercellular adhesion molecule 1)			Affymetrix [509946]	N
1623	chr9	136153874	136153875	rs651007	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	9q34.2	ABO	rs651007-T	0.2261785	8E-9	(EA, CD109 antigen)	0.2995	[0.2-0.4] unit decrease	Affymetrix [509946]	N
1623	chr9	136153874	136153875	rs651007	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	9q34.2	ABO	rs651007-T	0.2261785	8E-11	(OX-2 membrane glycoprotein)	0.3283	[0.23-0.43] unit decrease	Affymetrix [509946]	N
1623	chr9	136153874	136153875	rs651007	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	9q34.2	ABO	rs651007-T	0.2261785	7E-15	(EA, Intercellular adhesion molecule 2)	0.4016	[0.3-0.5] unit decrease	Affymetrix [509946]	N
1623	chr9	136153874	136153875	rs651007	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	9q34.2	ABO	rs651007-T	0.2261785	7E-13	(P-Selectin)	0.3726	[0.27-0.47] unit decrease	Affymetrix [509946]	N
1623	chr9	136153874	136153875	rs651007	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	9q34.2	ABO	rs651007-T	0.2261785	7E-13	(EA, Carbohydrate sulfotransferase 15)	0.3649	[0.27-0.46] unit decrease	Affymetrix [509946]	N
1623	chr9	136153874	136153875	rs651007	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	9q34.2	ABO	rs651007-T	0.2261785	6E-26	(EA, Endoglin)	0.5364	[0.44-0.63] unit decrease	Affymetrix [509946]	N
1623	chr9	136153874	136153875	rs651007	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	9q34.2	ABO	rs651007-T	0.2261785	5E-12	(EA, Cadherin-5)	0.3587	[0.26-0.46] unit decrease	Affymetrix [509946]	N
1623	chr9	136153874	136153875	rs651007	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	9q34.2	ABO	rs651007-T	0.2261785	5E-11	(EA, Protein jagged-1)	0.3358	[0.24-0.43] unit decrease	Affymetrix [509946]	N
1623	chr9	136153874	136153875	rs651007	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	9q34.2	ABO	rs651007-T	0.2261785	4E-44	(Insulin receptor)	0.6958	[0.6-0.79] unit decrease	Affymetrix [509946]	N
1623	chr9	136153874	136153875	rs651007	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	9q34.2	ABO	rs651007-T	0.2261785	3E-19	(Hepatocyte growth factor receptor)	0.4365	[0.34-0.53] unit decrease	Affymetrix [509946]	N
1623	chr9	136153874	136153875	rs651007	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	9q34.2	ABO	rs651007-T	0.2261785	3E-13	(EA, Vascular endothelial growth factor receptor 2)	0.367	[0.27-0.46] unit decrease	Affymetrix [509946]	N
1623	chr9	136153874	136153875	rs651007	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	9q34.2	ABO	rs651007-T	0.2261785	3E-12	(EA, Toll-like receptor 4:Lymphocyte antigen 96 complex)	0.3638	[0.26-0.46] unit decrease	Affymetrix [509946]	N
1623	chr9	136153874	136153875	rs651007	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	9q34.2	ABO	rs651007-T	0.2261785	1E-96	(E-Selectin)	0.9436	[0.86-1.02] unit decrease	Affymetrix [509946]	N
1623	chr9	136153874	136153875	rs651007	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	9q34.2	ABO	rs651007-T	0.2261785	1E-31	(Vascular endothelial growth factor receptor 3)	0.5933	[0.5-0.69] unit decrease	Affymetrix [509946]	N
1623	chr9	136153874	136153875	rs651007	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	9q34.2	ABO	rs651007-T	0.2261785	1E-29	(EA, Platelet glycoprotein 4)	0.5352	[0.45-0.63] unit decrease	Affymetrix [509946]	N
1623	chr9	136153874	136153875	rs651007	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Hematocrit	up to 40,258 European ancestry individuals, up to 16,128 African American individuals, up to 15,252 East Asian ancestry individuals.	16,389 European and African American individuals	9q34.2	ABO	rs651007-?	NR	7E-17				NR [2500000] (imputed)	N
1623	chr9	136153874	136153875	rs651007	25631608	Wessel J	2015-01-29	Nat Commun	Low-frequency and rare exome chip variants associate with fasting glucose and type 2 diabetes susceptibility.	Fasting blood glucose	50,900 European ancestry non-diabetic individuals, 9,664 African American non-diabetic individuals	NA	9q34.2	ABO	rs651007-A	0.2	1E-8		0.02	[0.012-0.028] unit increase	Illumina [197481]	N
1623	chr9	136153874	136153875	rs651007	25352340	Benyamin B	2014-10-29	Nat Commun	Novel loci affecting iron homeostasis and their effects in individuals at risk for hemochromatosis.	Iron status biomarkers (ferritin levels)	23,986 European ancestry individuals	Up to 24,986 European ancestry individuals	9q34.2	ABO	rs651007-T	0.202	1E-8		0.05	[0.032-0.068] unit decrease	Affymetrix, Illumina [~ 2100000] (imputed)	N
1623	chr9	136153874	136153875	rs651007	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	9q34.2	ABO	rs651007-T	0.21	6E-20	(ADpSGEGDFXAEGGGVR)	0.065	[0.051-0.079] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
1623	chr9	136153874	136153875	rs651007	24094242	Li J	2013-10-05	BMC Genomics	Genome-wide association study on serum alkaline phosphatase levels in a Chinese population.	Serum alkaline phosphatase levels	1,452 Han Chinese ancestry individuals	8,830 Han Chinese ancestry individuals	9q34.2	SURF6, ABO	rs651007-A	0.226	1E-56		0.079	[0.069-0.089] U/L decrease	Affymetrix [658288]	N
1623	chr9	136153874	136153875	rs651007	23381943	Williams FM	2013-01-01	Ann Neurol	Ischemic stroke is associated with the ABO locus: the EuroCLOT study.	End-stage coagulation	2,100 European ancestry individuals	NA	9q34.2	ABO	rs651007-C	0.81	2E-25	(FVIII)	0.461	[0.37-0.55] unit decrease	Illumina [NR] (imputed)	N
1623	chr9	136153874	136153875	rs651007	23093944	Krumsiek J	2012-10-18	PLoS Genet	Mining the unknown: a systems approach to metabolite identification combining genetic and metabolic information.	Serum metabolite levels	1,678 European ancestry individuals	NA	9q34.2	intergenic	rs651007-?	NR	1E-15	(ADpSGEGDFXAEGGGVR)	0.06719	[NR] unit increase	Affymetrix [655658]	N
1623	chr9	136153874	136153875	rs651007	21909109	Kim YJ	2011-09-11	Nat Genet	Large-scale genome-wide association studies in East Asians identify new genetic loci influencing metabolic traits.	Metabolite levels	12,545 Korean ancestry individuals	Up to 30,395 East Asian ancestry individuals	9q34.2	ABO	rs651007-A	0.26	6E-9	(LDL)	2.2778	[1.51-3.05] mg/dL increase	Affymetrix [~ 2200000] (imputed)	N
1623	chr9	136153874	136153875	rs651007	20147318	Qi L	2010-02-22	Hum Mol Genet	Genetic variants in ABO blood group region, plasma soluble E-selectin levels and risk of type 2 diabetes.	E-selectin levels	501 European ancestry type 2 diabetes female cases, 504 European ancestry female controls	518 European ancestry female individuals	9q34.2	ABO	rs651007-T	0.22	2E-82		17.23	[NR] ng/ml decrease	Affymetrix [721316]	N
1623	chr9	136153980	136153981	rs11244061	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	9q34.2		rs11244061-C	0.884616	5E-9		0.0366186	[0.024-0.049] unit decrease	NR [11722792] (imputed)	N
1623	chr9	136154167	136154168	rs579459	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Stem cell factor levels	21,758 European ancestry individuals	9,173 individuals	9q34.2		rs579459-T	0.78	1E-10		0.0708	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1623	chr9	136154167	136154168	rs579459	32084209	Seo JY	2020-02-21	PLoS One	A genome-wide association study on liver enzymes in Korean population.	Serum alkaline phosphatase levels	4,457 Korean ancestry individuals	2,031 Korean ancestry individuals	9q34.2	ABO	rs579459-C	0.246	2E-8		3.045	[1.99-4.1] unit decrease	Affymetrix [546738]	N
1623	chr9	136154167	136154168	rs579459	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 799 African American cases, 157,769 European ancestry controls, 14,353 African American controls	NA	9q34.2	ABO	rs579459-C	NR	4E-145		1.36	[1.33-1.39]	Affymetrix, Illumina [12923718] (imputed)	N
1623	chr9	136154167	136154168	rs579459	31262040	Pujol-Moix N	2019-06-30	Int J Mol Sci	Influence of ABO Locus on PFA-100 Collagen-ADP Closure Time Is Not Totally Dependent on the Von Willebrand Factor. Results of a GWAS on GAIT-2 Project Phenotypes.	Platelet reactivity measurement (collagen-epinephrine)	935 Spanish ancestry individuals	NA	9q34.2	ABO	rs579459-?	NR	1E-9				Illumina [10844567] (imputed)	N
1623	chr9	136154167	136154168	rs579459	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	9q34.2	NR	rs579459-?	NR	3E-10		2.857088	[1.97-3.74] unit increase	Illumina [32003504] (imputed)	N
1623	chr9	136154167	136154168	rs579459	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	9q34.2	NR	rs579459-?	NR	7E-11		2.653243	[1.86-3.45] unit increase	Illumina [31808917] (imputed)	N
1623	chr9	136154167	136154168	rs579459	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	LDL cholesterol levels	up to 23,353 African ancestry individuals, 13,171 Asian ancestry individuals, up to 82,522 European ancestry individuals, 6,646 Hispanic individuals	NA	9q34.2		rs579459-T	0.7972	1E-26		2.0948	[1.71-2.48] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1623	chr9	136154167	136154168	rs579459	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9q34.2	NR	rs579459-T	NR	1E-48		0.075	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1623	chr9	136154167	136154168	rs579459	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9q34.2	NR	rs579459-T	0.812	2E-10	(Hispanic)	0.122	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1623	chr9	136154167	136154168	rs579459	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9q34.2	NR	rs579459-T	0.786	9E-37	(EA)	0.071	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1623	chr9	136154167	136154168	rs579459	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9q34.2	NR	rs579459-T	NR	6E-60		0.085	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1623	chr9	136154167	136154168	rs579459	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9q34.2	NR	rs579459-T	0.812	3E-14	(Hispanic)	0.147	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1623	chr9	136154167	136154168	rs579459	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9q34.2	NR	rs579459-T	0.79	4E-7	(East Asian)	0.099	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1623	chr9	136154167	136154168	rs579459	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9q34.2	NR	rs579459-T	0.786	1E-43	(EA)	0.079	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1623	chr9	136154167	136154168	rs579459	28898252	Wheeler E	2017-09-12	PLoS Med	Impact of common genetic determinants of Hemoglobin A1c on type 2 diabetes risk and diagnosis in ancestrally diverse populations: A transethnic genome-wide meta-analysis.	Glycated hemoglobin levels	88,355 European ancestry individuals	NA	9q34.2	ABO	rs579459-C	0.2389	9E-9		0.0107	[0.007-0.0144] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1623	chr9	136154167	136154168	rs579459	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Total cholesterol levels	32,576 East Asian ancestry individuals, 187,365 European ancestry individuals	10,855 Chinese ancestry individuals	9q34.2	ABO	rs579459-T	0.785	4E-49	(Trans-ethnic initial)	0.062	[0.053-0.071] unit decrease (EA Beta values)	Affymetrix, Illumina [up to 1900000] (imputed)	N
1623	chr9	136154167	136154168	rs579459	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Total cholesterol levels	32,576 East Asian ancestry individuals, 187,365 European ancestry individuals	10,855 Chinese ancestry individuals	9q34.2	ABO	rs579459-T	0.65	5E-10	(Asian initial, BMI unadjusted)	0.059	[0.041-0.077] unit decrease	Affymetrix, Illumina [up to 1900000] (imputed)	N
1623	chr9	136154167	136154168	rs579459	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Total cholesterol levels	22,814 East Asian ancestry individuals	57,490 East Asian ancestry individuals	9q34.2	ABO	rs579459-T	0.78	7E-13	(BMI unadjusted)	0.082	[0.06-0.104] unit decrease	Affymetrix, Illumina [~ 2400000] (imputed)	N
1623	chr9	136154167	136154168	rs579459	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	LDL cholesterol levels	32,285 East Asian ancestry individuals, 173,082 European ancestry individuals	8,478 Chinese ancestry individuals	9q34.2	ABO	rs579459-T	0.785	2E-51	(Trans-ethnic initial)	0.0665	[0.058-0.075] unit decrease (EA Beta value)	Affymetrix, Illumina [~ 1900000] (imputed)	N
1623	chr9	136154167	136154168	rs579459	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	LDL cholesterol levels	32,285 East Asian ancestry individuals, 173,082 European ancestry individuals	8,478 Chinese ancestry individuals	9q34.2	ABO	rs579459-T	0.65	2E-9	(Asian initial, BMI unadjusted)	0.057	[0.039-0.075] unit decrease	Affymetrix, Illumina [~ 1900000] (imputed)	N
1623	chr9	136154167	136154168	rs579459	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	LDL cholesterol levels	22,526 East Asian ancestry individuals	37,842 East Asian ancestry individuals	9q34.2	ABO	rs579459-T	0.78	7E-13	(BMI unadjusted)	0.082	[0.06-0.104] unit decrease	Affymetrix, Illumina [~ 2400000] (imputed)	N
1623	chr9	136154167	136154168	rs579459	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Red blood cell count	up to 40,258 European ancestry individuals, up to 16,128 African American individuals, up to 15,252 East Asian individuals.	16,389 individuals of European and African American ancestry.	9q34.2	ABO	rs579459-T	NR	4E-11	(Asian)	0.0086	[0.0061-0.0111] unit increase	NR [2500000] (imputed)	N
1623	chr9	136154167	136154168	rs579459	26582766	Lu X	2015-11-18	Circ Cardiovasc Genet	Genetic Susceptibility to Lipid Levels and Lipid Change Over Time and Risk of Incident Hyperlipidemia in Chinese Populations.	LDL cholesterol	8,344 Han Chinese ancestry individuals	14,739 Han Chinese ancestry individuals	9q34.2	ABO	rs579459-C	0.2	6E-13		2.853	[2.08-3.62] unit increase	Affymetrix, Illumina [2573667] (imputed)	N
1623	chr9	136154167	136154168	rs579459	26582766	Lu X	2015-11-18	Circ Cardiovasc Genet	Genetic Susceptibility to Lipid Levels and Lipid Change Over Time and Risk of Incident Hyperlipidemia in Chinese Populations.	Cholesterol, total	8,344 Han Chinese ancestry individuals	14,739 Han Chinese ancestry individuals	9q34.2	ABO	rs579459-C	0.2	3E-10		3.038	[2.1-3.98] unit increase	Affymetrix, Illumina [2573667] (imputed)	N
1623	chr9	136154167	136154168	rs579459	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite ratios	Up to 5,591 European ancestry individuals	Up to 1,767 European ancestry individuals	9q34.2	ABO	rs579459-T	0.79	1E-28	(ADpSGEGDFXAEGGGVR/X-14304--leucylalanine)	0.124	[0.1-0.15] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
1623	chr9	136154167	136154168	rs579459	24586186	Rueedi R	2014-02-20	PLoS Genet	Genome-wide association study of metabolic traits reveals novel gene-metabolite-disease links.	Urinary metabolites (H-NMR features)	835 European ancestry individuals	601 Brazilian individuals	9q34.2	ABO	rs579459-T	0.27	2E-32	(5.1825, Unknown)	0.53	[NR] unit increase	Illumina [713870] (imputed)	N
1623	chr9	136154167	136154168	rs579459	24586186	Rueedi R	2014-02-20	PLoS Genet	Genome-wide association study of metabolic traits reveals novel gene-metabolite-disease links.	Urinary metabolites (H-NMR features)	835 European ancestry individuals	601 Brazilian individuals	9q34.2	ABO	rs579459-T	0.27	1E-28	(2.0525, Unknown)	0.49	[NR] unit increase	Illumina [713870] (imputed)	N
1623	chr9	136154167	136154168	rs579459	24262325	Dichgans M	2013-11-21	Stroke	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Coronary artery disease or large artery stroke	2,167 Large artery stroke cases, 22,233 Coronary artery disease cases, ~ 75,921 controls	NA	9q34.2	ABO	rs579459-?		3E-8				Affymetrix, Illumina [up to 2500000] (imputed)	N
1623	chr9	136154167	136154168	rs579459	24262325	Dichgans M	2013-11-21	Stroke	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Coronary artery disease or ischemic stroke	12,389 Ischemic stroke cases, 22,233 Coronary artery disease cases, ~ 88,766 controls	NA	9q34.2	ABO	rs579459-C	NR	2E-9				Affymetrix, Illumina [up to 2500000] (imputed)	N
1623	chr9	136154167	136154168	rs579459	24262325	Dichgans M	2013-11-21	Stroke	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Coronary artery disease	33,398 cases, 75,726 controls	NA	9q34.2	ABO	rs579459-C	NR	2E-7		1.1	[1.06-1.14]	Illumina [575000] (imputed)	N
1623	chr9	136154167	136154168	rs579459	23222517	van der Harst P	2012-12-05	Nature	Seventy-five genetic loci influencing the human red blood cell.	Red blood cell traits	62,553 European ancestry individuals, 9,308 South Asian ancestry individuals	63,506 European ancestry individuals	9q34.2	ABO	rs579459-T	0.8	9E-18	(EA, RBCC)	0.021	[0.015-0.027] unit increase	Affymetrix, Illumina, Perlegen [2711806] (imputed)	N
1623	chr9	136154167	136154168	rs579459	22001757	Chambers JC	2011-10-16	Nat Genet	Genome-wide association study identifies loci influencing concentrations of liver enzymes in plasma.	Liver enzyme levels (alkaline phosphatase)	Up to 52,350 European ancestry individuals, up to 8,739 Indian Asian ancestry individuals	NA	9q34.2	ABO	rs579459-T	0.80	3E-123		8.8	[7.40-10.2] % increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1623	chr9	136154167	136154168	rs579459	21378990	Schunkert H	2011-03-06	Nat Genet	Large-scale association analysis identifies 13 new susceptibility loci for coronary artery disease.	Coronary heart disease	22,233 European ancestry cases, 64,762 European ancestry controls	56,682 European ancestry cases and controls	9q34.2	ABO	rs579459-C	0.21	4E-14		1.1	[1.07-1.13]	Affymetrix, Illumina [~ 2300000] (imputed)	N
1623	chr9	136154167	136154168	rs579459	20167578	Barbalic M	2010-02-18	Hum Mol Genet	Large-scale genomic studies reveal central role of ABO in sP-selectin and sICAM-1 levels.	Soluble levels of adhesion molecules	Up to 9,813 European ancestry individuals	NA	9q34.2	ABO	rs579459-T	NR	2E-41	(P-Selectin)	14.0	[12.04-15.96] % increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1623	chr9	136154167	136154168	rs579459	19729612	Paterson AD	2009-09-03	Arterioscler Thromb Vasc Biol	Genome-wide association identifies the ABO blood group as a major locus associated with serum levels of soluble E-selectin.	Soluble E-selectin levels	685 European ancestry individuals with type 1 diabetes	477 European ancestry individuals	9q34.2	ABO	rs579459-C	0.20	1E-29				Illumina [~ 841000]	N
1623	chr9	136154303	136154304	rs649129	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	9q34.2		rs649129-T	NR	4E-11		0.0188	[0.013-0.024] unit decrease	Affymetrix, Illumina [20535842] (imputed)	N
1623	chr9	136154303	136154304	rs649129	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (salicylic acid and derivatives)	61,583 European ancestry cases, 50,427 European ancestry controls, 41,461 East Asian ancestry cases, 137,265 East Asian ancestry controls	NA	9q34.2		rs649129-T	NR	1E-9		0.0595	[0.04-0.079] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1623	chr9	136154303	136154304	rs649129	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	33,307 East Asian ancestry individuals	NA	9q34.2	ABO	rs649129-T	0.2343	9E-8		0.0183	[0.012-0.025] unit increase	Affymetrix, Illumina [15728197] (imputed)	N
1623	chr9	136154303	136154304	rs649129	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	9q34.2	ABO	rs649129-T	0.2173	3E-15		0.0108	[0.0079-0.0137] unit increase	Affymetrix, Illumina [33811881] (imputed)	N
1623	chr9	136154303	136154304	rs649129	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	9q34.2	NR	rs649129-?	NR	2E-10		2.868314	[1.98-3.75] unit increase	Illumina [32003504] (imputed)	N
1623	chr9	136154303	136154304	rs649129	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	9q34.2	NR	rs649129-?	NR	6E-11		2.660083	[1.86-3.46] unit increase	Illumina [31808917] (imputed)	N
1623	chr9	136154303	136154304	rs649129	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9q34.2	NR	rs649129-C	NR	1E-48		0.075	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1623	chr9	136154303	136154304	rs649129	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9q34.2	NR	rs649129-C	0.812	2E-10	(Hispanic)	0.122	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1623	chr9	136154303	136154304	rs649129	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9q34.2	NR	rs649129-C	0.786	9E-37	(EA)	0.071	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1623	chr9	136154303	136154304	rs649129	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9q34.2	NR	rs649129-C	NR	9E-60		0.085	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1623	chr9	136154303	136154304	rs649129	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9q34.2	NR	rs649129-C	0.812	3E-14	(Hispanic)	0.147	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1623	chr9	136154303	136154304	rs649129	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9q34.2	NR	rs649129-C	0.792	6E-7	(East Asian)	0.098	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1623	chr9	136154303	136154304	rs649129	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9q34.2	NR	rs649129-C	0.786	1E-43	(EA)	0.079	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1623	chr9	136154303	136154304	rs649129	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite ratios	Up to 5,591 European ancestry individuals	Up to 1,767 European ancestry individuals	9q34.2	ABO	rs649129-T	0.22	9E-37	(ADSGEGDFXAEGGGVR/ADpSGEGDFXAEGGGVR)	0.085	[0.071-0.099] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
1623	chr9	136154303	136154304	rs649129	20167578	Barbalic M	2010-02-18	Hum Mol Genet	Large-scale genomic studies reveal central role of ABO in sP-selectin and sICAM-1 levels.	Soluble levels of adhesion molecules	Up to 9,813 European ancestry individuals	NA	9q34.2	ABO	rs649129-T	NR	1E-15	(ICAM)	3.95	[2.99-4.91] % decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1623	chr9	136154866	136154867	rs495828	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large VLDL	115,082 European ancestry individuals	NA	9q34.2		rs495828-G	0.792748	6E-9		0.0290914	[0.019-0.039] unit decrease	NR [11722792] (imputed)	N
1623	chr9	136154866	136154867	rs495828	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	9q34.2	ABO	rs495828-T		1E-124		0.065	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
1623	chr9	136154866	136154867	rs495828	31320639	Hillary RF	2019-07-18	Nat Commun	Genome and epigenome wide studies of neurological protein biomarkers in the Lothian Birth Cohort 1936.	Neurological blood protein biomarker levels	750 European ancestry individuals	NA	9q34.2	ABO	rs495828-T	0.1582	3E-10	(gal-8)	0.44528	[0.31-0.58] unit decrease	Illumina [8683751] (imputed)	N
1623	chr9	136154866	136154867	rs495828	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	9q34.2	ABO, SURF6	rs495828-T	NR	2E-7	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
1623	chr9	136154866	136154867	rs495828	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	9q34.2	ABO, SURF6	rs495828-T	NR	1E-7	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
1623	chr9	136154866	136154867	rs495828	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	9q34.2	ABO, SURF6	rs495828-T	NR	1E-6				Affymetrix, Illumina [NR] (imputed)	N
1623	chr9	136154866	136154867	rs495828	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	9q34.2	ABO, SURF6	rs495828-T	NR	4E-103	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1623	chr9	136154866	136154867	rs495828	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	9q34.2	ABO, SURF6	rs495828-T	NR	3E-7	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
1623	chr9	136154866	136154867	rs495828	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	9q34.2	ABO, SURF6	rs495828-T	NR	2E-8	(Hispanic)			Affymetrix, Illumina [NR] (imputed)	N
1623	chr9	136154866	136154867	rs495828	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	9q34.2	ABO, SURF6	rs495828-T	NR	1E-114				Affymetrix, Illumina [NR] (imputed)	N
1623	chr9	136154866	136154867	rs495828	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	9q34.2	ABO, SURF6	rs495828-T	NR	8E-9	(H)			Affymetrix, Illumina [NR] (imputed)	N
1623	chr9	136154866	136154867	rs495828	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	9q34.2	ABO, SURF6	rs495828-T	NR	5E-69	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1623	chr9	136154866	136154867	rs495828	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	9q34.2	ABO, SURF6	rs495828-T	NR	4E-86				Affymetrix, Illumina [NR] (imputed)	N
1623	chr9	136154866	136154867	rs495828	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	9q34.2	ABO, SURF6	rs495828-T	NR	2E-8	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
1623	chr9	136154866	136154867	rs495828	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	9q34.2	ABO, SURF6	rs495828-T	NR	8E-47		2.453	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1623	chr9	136154866	136154867	rs495828	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	9q34.2	ABO, SURF6	rs495828-T	NR	6E-7	(Asian)	1.684	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1623	chr9	136154866	136154867	rs495828	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	9q34.2	ABO, SURF6	rs495828-T	NR	2E-36	(EA)	2.645	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1623	chr9	136154866	136154867	rs495828	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	9q34.2	ABO, SURF6	rs495828-T	NR	1E-7	(Hispanic)	3.35	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1623	chr9	136154866	136154867	rs495828	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	9q34.2	ABO, SURF6	rs495828-T	NR	7E-29		2.222	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1623	chr9	136154866	136154867	rs495828	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	9q34.2	ABO, SURF6	rs495828-T	NR	4E-18	(EA)	2.471	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1623	chr9	136154866	136154867	rs495828	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	9q34.2	ABO, SURF6	rs495828-T	NR	1E-7	(Asian)	1.668	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1623	chr9	136154866	136154867	rs495828	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	9q34.2		rs495828-?	NR	6E-9				NR [~ 8900000] (imputed)	N
1623	chr9	136154866	136154867	rs495828	29234017	Carayol J	2017-12-12	Nat Commun	Protein quantitative trait locus study in obesity during weight-loss identifies a leptin regulator.	Protein levels in obesity	494 European ancestry individuals	NA	9q34.2	NR	rs495828-?	NR	9E-40	(sE-Selectin)	0.5	[0.42-0.58] unit decrease	Illumina [4020654] (imputed)	N
1623	chr9	136154866	136154867	rs495828	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	9q34.2	ABO	rs495828-T	0.202	9E-12		0.06	[0.042-0.078] unit increase	Affymetrix [7947838] (imputed)	N
1623	chr9	136154866	136154867	rs495828	28369058	Folkersen L	2017-04-03	PLoS Genet	Mapping of 79 loci for 83 plasma protein biomarkers in cardiovascular disease.	Blood protein levels in cardiovascular risk	3,394 European ancestry individuals	2,639 individuals	9q34.2	SURF6	rs495828-T	0.25	6E-13		0.17	unit decrease	Illumina [5270624] (imputed)	N
1623	chr9	136154866	136154867	rs495828	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Red blood cell count	up to 40,258 European ancestry individuals, up to 16,128 African American individuals, up to 15,252 East Asian individuals.	16,389 individuals of European and African American ancestry.	9q34.2	ABO	rs495828-?	NR	1E-8				NR [2500000] (imputed)	N
1623	chr9	136154866	136154867	rs495828	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Hemoglobin levels	up to 40,258 European ancestry individuals, 16,128 African American individuals, up to 15,252 East Asian ancestry individuals.	16,389 European and African American individuals	9q34.2	ABO	rs495828-T	NR	2E-10	(Asian)	0.1033	[0.072-0.135] grams/deciliter decrease	Affymetrix, Illumina [2500000] (imputed)	N
1623	chr9	136154866	136154867	rs495828	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Hemoglobin levels	up to 40,258 European ancestry individuals, 16,128 African American individuals, up to 15,252 East Asian ancestry individuals.	16,389 European and African American individuals	9q34.2	ABO	rs495828-?	NR	1E-19				Affymetrix, Illumina [2500000] (imputed)	N
1623	chr9	136154866	136154867	rs495828	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Hematocrit	up to 40,258 European ancestry individuals, up to 16,128 African American individuals, up to 15,252 East Asian ancestry individuals.	16,389 European and African American individuals	9q34.2	ABO	rs495828-T	NR	3E-9	(Asian)	0.2708	[0.18-0.36] percentage decrease	NR [2500000] (imputed)	N
1623	chr9	136154866	136154867	rs495828	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite ratios	Up to 5,591 European ancestry individuals	Up to 1,767 European ancestry individuals	9q34.2	ABO	rs495828-T	0.22	6E-34	(DSGEGDFXAEGGGVR/ADpSGEGDFXAEGGGVR)	0.088	[0.074-0.102] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
1623	chr9	136154866	136154867	rs495828	22672568	Heit JA	2012-06-05	J Thromb Haemost	A genome-wide association study of venous thromboembolism identifies risk variants in chromosomes 1q24.2 and 9q.	Venous thromboembolism	1,503 European and other ancestry cases, 1,459 European and other ancestry controls	1,407 cases, 1,418 controls	9q34.2	ABO	rs495828-T	0.272	3E-16		1.65	[1.46-1.86]	Illumina [~ 2500000] (imputed)	N
1623	chr9	136154866	136154867	rs495828	20139978	Kamatani Y	2010-02-07	Nat Genet	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Red blood cell count	14,392 Japanese ancestry individuals	NA	9q34.2	ABO	rs495828-T	0.28	3E-12		0.091	[0.066-0.116] unit decrease	Illumina [561583]	N
1623	chr9	136154866	136154867	rs495828	20139978	Kamatani Y	2010-02-07	Nat Genet	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Hematological and biochemical traits	Up to 14,402 Japanese individuals	NA	9q34.2	ABO	rs495828-T	0.28	6E-10	(Ht)	0.081	[0.056-0.106] unit decrease	Illumina [561583]	N
1623	chr9	136154866	136154867	rs495828	20139978	Kamatani Y	2010-02-07	Nat Genet	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Hematological and biochemical traits	Up to 14,402 Japanese individuals	NA	9q34.2	ABO	rs495828-T	0.28	4E-59	(ALP)	0.308	[0.27-0.35] unit decrease	Illumina [561583]	N
1623	chr9	136154866	136154867	rs495828	20139978	Kamatani Y	2010-02-07	Nat Genet	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Hematological and biochemical traits	Up to 14,402 Japanese individuals	NA	9q34.2	ABO	rs495828-T	0.28	1E-11	(Hb)	0.089	[0.064-0.114] unit decrease	Illumina [561583]	N
1623	chr9	136154866	136154867	rs495828	20066004	Chung CM	2010-01-12	Pharmacogenomics J	A genome-wide association study identifies new loci for ACE activity: potential implications for response to ACE inhibitor.	Angiotensin-converting enzyme activity	400 Han Chinese ancestry hypertensive cases	623 Han Chinese ancestry hypertensive cases	9q34.2	ABO	rs495828-A	0.17	3E-8		4.9	[NR] % variance	Illumina [~ 550000]	N
1623	chr9	136154999	136155000	rs635634	35264221	Caron B	2022-03-09	Genome Med	Integrative genetic and immune cell analysis of plasma proteins in healthy donors identifies novel associations involving primary immune deficiency genes.	E Cad plasma levels	400 French ancestry individuals	NA	9q34.2		rs635634-C	NR	3E-9		0.176	[0.12-0.23] ng/mL decrease	Illumina [5201092] (imputed)	N
1623	chr9	136154999	136155000	rs635634	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total phospholipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	9q34.2		rs635634-C	0.816457	3E-15		0.0400797	[0.03-0.05] unit decrease	NR [11722792] (imputed)	N
1623	chr9	136154999	136155000	rs635634	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large HDL	115,082 European ancestry individuals	NA	9q34.2		rs635634-C	0.816457	8E-9		0.027738	[0.018-0.037] unit increase	NR [11722792] (imputed)	N
1623	chr9	136154999	136155000	rs635634	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small VLDL	115,082 European ancestry individuals	NA	9q34.2		rs635634-C	0.816457	2E-12		0.0372473	[0.027-0.048] unit decrease	NR [11722792] (imputed)	N
1623	chr9	136154999	136155000	rs635634	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small HDL	115,082 European ancestry individuals	NA	9q34.2		rs635634-C	0.816457	8E-17		0.0443892	[0.034-0.055] unit decrease	NR [11722792] (imputed)	N
1623	chr9	136154999	136155000	rs635634	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium VLDL	115,082 European ancestry individuals	NA	9q34.2		rs635634-C	0.816457	4E-10		0.033166	[0.023-0.044] unit decrease	NR [11722792] (imputed)	N
1623	chr9	136154999	136155000	rs635634	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	9q34.2		rs635634-C	0.816457	2E-16		0.0431242	[0.033-0.053] unit decrease	NR [11722792] (imputed)	N
1623	chr9	136154999	136155000	rs635634	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholines levels	115,006 European ancestry individuals	NA	9q34.2		rs635634-C	0.816457	7E-13		0.0361163	[0.026-0.046] unit decrease	NR [11722792] (imputed)	N
1623	chr9	136154999	136155000	rs635634	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	9q34.2		rs635634-C	0.816446	2E-17		0.0418545	[0.032-0.051] unit increase	NR [11722792] (imputed)	N
1623	chr9	136154999	136155000	rs635634	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	9q34.2		rs635634-C	0.816457	3E-17		0.045211	[0.035-0.056] unit increase	NR [11722792] (imputed)	N
1623	chr9	136154999	136155000	rs635634	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	9q34.2		rs635634-C	0.816863	2E-12		0.0376617	[0.027-0.048] unit decrease	NR [11722792] (imputed)	N
1623	chr9	136154999	136155000	rs635634	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large HDL	115,082 European ancestry individuals	NA	9q34.2		rs635634-C	0.816457	2E-10		0.0308493	[0.021-0.04] unit increase	NR [11722792] (imputed)	N
1623	chr9	136154999	136155000	rs635634	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small VLDL	115,082 European ancestry individuals	NA	9q34.2		rs635634-C	0.816457	6E-22		0.0513679	[0.041-0.062] unit decrease	NR [11722792] (imputed)	N
1623	chr9	136154999	136155000	rs635634	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small HDL	115,082 European ancestry individuals	NA	9q34.2		rs635634-C	0.816457	9E-13		0.0379089	[0.028-0.048] unit decrease	NR [11722792] (imputed)	N
1623	chr9	136154999	136155000	rs635634	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphoglycerides levels	115,006 European ancestry individuals	NA	9q34.2		rs635634-C	0.816457	1E-10		0.0324912	[0.023-0.042] unit decrease	NR [11722792] (imputed)	N
1623	chr9	136154999	136155000	rs635634	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphatidylcholine levels	115,006 European ancestry individuals	NA	9q34.2		rs635634-C	0.816457	3E-10		0.0314972	[0.022-0.041] unit decrease	NR [11722792] (imputed)	N
1623	chr9	136154999	136155000	rs635634	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small HDL	115,082 European ancestry individuals	NA	9q34.2		rs635634-C	0.816457	5E-16		0.0425522	[0.032-0.053] unit decrease	NR [11722792] (imputed)	N
1623	chr9	136154999	136155000	rs635634	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in VLDL	115,082 European ancestry individuals	NA	9q34.2		rs635634-C	0.816457	5E-11		0.0348395	[0.024-0.045] unit decrease	NR [11722792] (imputed)	N
1623	chr9	136154999	136155000	rs635634	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small VLDL particles	115,082 European ancestry individuals	NA	9q34.2		rs635634-C	0.816457	2E-11		0.035175	[0.025-0.045] unit decrease	NR [11722792] (imputed)	N
1623	chr9	136154999	136155000	rs635634	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small HDL particles	115,082 European ancestry individuals	NA	9q34.2		rs635634-C	0.816457	5E-25		0.0553368	[0.045-0.066] unit decrease	NR [11722792] (imputed)	N
1623	chr9	136154999	136155000	rs635634	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium VLDL particles	115,082 European ancestry individuals	NA	9q34.2		rs635634-C	0.816457	1E-16		0.0442344	[0.034-0.055] unit decrease	NR [11722792] (imputed)	N
1623	chr9	136154999	136155000	rs635634	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of VLDL particles	115,082 European ancestry individuals	NA	9q34.2		rs635634-C	0.816457	7E-14		0.0397392	[0.029-0.05] unit decrease	NR [11722792] (imputed)	N
1623	chr9	136154999	136155000	rs635634	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	9q34.2		rs635634-C	0.816457	6E-17		0.0447124	[0.034-0.055] unit decrease	NR [11722792] (imputed)	N
1623	chr9	136154999	136155000	rs635634	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large VLDL	115,082 European ancestry individuals	NA	9q34.2		rs635634-C	0.816457	6E-10		0.0326972	[0.022-0.043] unit decrease	NR [11722792] (imputed)	N
1623	chr9	136154999	136155000	rs635634	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small HDL	115,082 European ancestry individuals	NA	9q34.2		rs635634-C	0.816457	1E-22		0.0524091	[0.042-0.063] unit decrease	NR [11722792] (imputed)	N
1623	chr9	136154999	136155000	rs635634	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	9q34.2		rs635634-C	0.816457	3E-12		0.0330105	[0.024-0.042] unit increase	NR [11722792] (imputed)	N
1623	chr9	136154999	136155000	rs635634	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ICAM2	5,358 Icelandic ancestry individuals	NA	9q34.2		rs635634-T	0.1222	4E-158		0.715114	[0.66-0.77] unit decrease	Illumina [7506463] (imputed)	N
1623	chr9	136154999	136155000	rs635634	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CCL28	5,367 Icelandic ancestry individuals	NA	9q34.2		rs635634-T	0.1222	1E-18		0.256131	[0.2-0.31] unit decrease	Illumina [7506463] (imputed)	N
1623	chr9	136154999	136155000	rs635634	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Varicose veins	22,037 European ancestry cases, 437,665 European ancestry controls, 474 East Asian ancestry cases, 178,252 East Asian ancestry controls	NA	9q34.2		rs635634-T	NR	1E-10		0.0872	[0.061-0.114] unit increase	Affymetrix, Illumina [25842955] (imputed)	N
1623	chr9	136154999	136155000	rs635634	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls, 33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	9q34.2		rs635634-T	NR	3E-48		0.0866	[0.075-0.098] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1623	chr9	136154999	136155000	rs635634	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	9q34.2	ABO	rs635634-C	0.815564	2E-52		0.0100448	[0.0087-0.0114] unit decrease	Affymetrix [13995440] (imputed)	N
1623	chr9	136154999	136155000	rs635634	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Tissue factor levels	21,758 European ancestry individuals	9,173 individuals	9q34.2		rs635634-T	0.2	1E-107		0.241	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1623	chr9	136154999	136155000	rs635634	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	ST2 protein levels	21,758 European ancestry individuals	9,173 individuals	9q34.2		rs635634-T	0.2	4E-19		0.088	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1623	chr9	136154999	136155000	rs635634	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	9q34.2	ABO	rs635634-T	0.184217	8E-11		0.025537955	[0.018-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
1623	chr9	136154999	136155000	rs635634	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (multivariate analysis)	477,968 European ancestry individuals	NA	9q34.2	ABO, SURF6	rs635634-T	0.189	1E-8		0.031	[0.021-0.041] unit decrease	NR [NR] (imputed)	N
1623	chr9	136154999	136155000	rs635634	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (age of onset)	117,130 European ancestry individuals	NA	9q34.2	ABO, SURF6	rs635634-T	0.189	1E-8		0.031	[0.021-0.041] unit decrease	NR [7647814] (imputed)	N
1623	chr9	136154999	136155000	rs635634	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	9q34.2	SURF6	rs635634-C	0.815974	1E-33		0.030651	[0.026-0.036] unit decrease	Affymetrix [NR] (imputed)	N
1623	chr9	136154999	136155000	rs635634	32152699	Nudel R	2020-03-09	Hum Genet	A large population-based investigation into the genetics of susceptibility to gastrointestinal infections and the link between gastrointestinal infections and mental illness.	Gastrointestinal infection	7,197 Danish ancestry cases, 37,062 Danish ancestry controls	NA	9q34.2	NR	rs635634-T	NR	3E-8		1.1336	[1.09-1.18]	Illumina [11600722] (imputed)	N
1623	chr9	136154999	136155000	rs635634	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	9q34.2	NR	rs635634-C	0.816238	2E-31		0.0300881	[0.025-0.035] unit decrease	NR [NR]	N
1623	chr9	136154999	136155000	rs635634	31666285	Olafsson S	2019-10-30	Cancer Epidemiol Biomarkers Prev	Common and rare sequence variants influencing tumor biomarkers in blood.	Serum carcinoembryonic antigen levels	22,309 Icelandic ancestry individuals	NA	9q34.2	ABO	rs635634-T	0.13	9E-16		0.13	[0.16-0.10] unit decrease	Illumina [NR] (imputed)	N
1623	chr9	136154999	136155000	rs635634	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	9q34.2	NR	rs635634-?	NR	4E-15		3.740376	[2.81-4.67] unit increase	Illumina [32003504] (imputed)	N
1623	chr9	136154999	136155000	rs635634	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	9q34.2	NR	rs635634-?	NR	1E-15		3.421217	[2.58-4.26] unit increase	Illumina [31808917] (imputed)	N
1623	chr9	136154999	136155000	rs635634	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	9q34.2	ABO	rs635634-T	0.2219	2E-15		0.0066	[0.005-0.0082] unit increase	Affymetrix, Illumina [8176554] (imputed)	N
1623	chr9	136154999	136155000	rs635634	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (salicylic acid and derivatives)	61,583 European ancestry cases, 50,427 European ancestry controls	NA	9q34.2	ABO	rs635634-T	0.184501	7E-11		0.06663824	[0.047-0.087] unit increase	Affymetrix [7288503] (imputed)	N
1623	chr9	136154999	136155000	rs635634	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	LDL cholesterol levels	up to 23,353 African ancestry individuals, 13,171 Asian ancestry individuals, up to 82,522 European ancestry individuals, 6,646 Hispanic individuals	NA	9q34.2		rs635634-T	0.1837	1E-29		2.3398	[1.93-2.75] unit increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1623	chr9	136154999	136155000	rs635634	30659681	Lindstrom S	2019-01-19	Genet Epidemiol	A large-scale exome array analysis of venous thromboembolism.	Venous thromboembolism	8,332 European ancestry cases, 16,087 European ancestry controls, 382 African-American cases, 1,476 African-American controls	NA	9q34.2	ABO	rs635634-?	0.221	2E-73		1.6	[1.52-1.68]	Illumina [64794]	N
1623	chr9	136154999	136155000	rs635634	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	9q34.2	ABO	rs635634-C	0.81634	3E-33		0.0288622	[0.024-0.034] unit increase	NR [13737936] (imputed)	N
1623	chr9	136154999	136155000	rs635634	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	9q34.2		rs635634-?	NR	3E-31				NR [~ 8900000] (imputed)	N
1623	chr9	136154999	136155000	rs635634	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	9q34.2		rs635634-?	NR	8E-34		0.0311795	[0.026-0.036] unit increase	Affymetrix [20259828] (imputed)	N
1623	chr9	136154999	136155000	rs635634	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q34.2	ABO	rs635634-T	0.18	7E-18	(Intercellular adhesion molecule 5, ICAM5.5124.62.3)	0.28	[0.22-0.34] unit decrease	Affymetrix [10572788] (imputed)	N
1623	chr9	136154999	136155000	rs635634	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q34.2	ABO	rs635634-T	0.18	6E-21	(Leukemia inhibitory factor receptor, LIFR.5837.49.3)	0.3	[0.24-0.36] unit decrease	Affymetrix [10572788] (imputed)	N
1623	chr9	136154999	136155000	rs635634	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q34.2	ABO	rs635634-T	0.18	5E-13	(Interleukin-6 receptor subunit beta, IL6ST.2620.4.2)	0.23	[0.17-0.29] unit decrease	Affymetrix [10572788] (imputed)	N
1623	chr9	136154999	136155000	rs635634	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q34.2	ABO	rs635634-T	0.18	4E-80	(Vascular endothelial growth factor receptor 2, KDR.3651.50.5)	0.58	[0.52-0.64] unit decrease	Affymetrix [10572788] (imputed)	N
1623	chr9	136154999	136155000	rs635634	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q34.2	ABO	rs635634-T	0.18	3E-40	(Intercellular adhesion molecule 5, ICAM5.8245.27.3)	0.42	[0.36-0.48] unit decrease	Affymetrix [10572788] (imputed)	N
1623	chr9	136154999	136155000	rs635634	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q34.2	ABO	rs635634-T	0.18	3E-33	(Hepatocyte growth factor receptor, MET.2837.3.2)	0.38	[0.32-0.44] unit decrease	Affymetrix [10572788] (imputed)	N
1623	chr9	136154999	136155000	rs635634	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q34.2	ABO	rs635634-T	0.18	3E-19	(Thrombospondin type-1 domain-containing protein 1, THSD1.5621.64.3)	0.29	[0.23-0.35] unit decrease	Affymetrix [10572788] (imputed)	N
1623	chr9	136154999	136155000	rs635634	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q34.2	ABO	rs635634-T	0.18	2E-19	(Semaphorin-6A, SEMA6A.7945.10.3)	0.29	[0.23-0.35] unit decrease	Affymetrix [10572788] (imputed)	N
1623	chr9	136154999	136155000	rs635634	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q34.2	ABO	rs635634-T	0.18	1E-13	(Endoglin, ENG.4908.6.1)	0.24	[0.18-0.3] unit decrease	Affymetrix [10572788] (imputed)	N
1623	chr9	136154999	136155000	rs635634	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q34.2	ABO	rs635634-T	0.18	1E-11	(Insulin-like growth factor 1 receptor, IGF1R.4232.19.2)	0.22	[0.16-0.28] unit decrease	Affymetrix [10572788] (imputed)	N
1623	chr9	136154999	136155000	rs635634	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Stroke	40,585 European ancestry cases, 406,111 European ancestry controls, 17,369 East Asian ancestry cases, 28,195 East Asian ancestry controls, 2,437 South Asian ancestry cases, 6,707 South Asian ancestry controls, 5,541 African American cases, 15,154 African American controls, 365 Asian ancestry cases, 333 Asian ancestry controls, 865 Latin American cases, 692 Latin American controls	NA	9q34.2	ABO	rs635634-?	NR	4E-6				NR [~ 8000000] (imputed)	N
1623	chr9	136154999	136155000	rs635634	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Stroke	40,585 European ancestry cases, 406,111 European ancestry controls	NA	9q34.2	ABO	rs635634-?	NR	6E-8				NR [~ 8000000] (imputed)	N
1623	chr9	136154999	136155000	rs635634	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Ischemic stroke (cardioembolic)	7,193 European ancestry cases, 406,111 European ancestry controls, 847 East Asian ancestry cases, 28,195 East Asian ancestry controls, 422 South Asian ancestry cases, 6,707 South Asian ancestry controls, 414 African American cases, 15,146 African American controls, 31 Asian ancestry cases, 333 Asian ancestry controls, 99 Latin American cases, 692 Latin American controls	NA	9q34.2	ABO	rs635634-?	NR	6E-7				NR [~ 8000000] (imputed)	N
1623	chr9	136154999	136155000	rs635634	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Ischemic stroke (cardioembolic)	7,193 European ancestry cases, 406,111 European ancestry controls	NA	9q34.2	ABO	rs635634-?	NR	3E-7				NR [~ 8000000] (imputed)	N
1623	chr9	136154999	136155000	rs635634	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Ischemic stroke	34,217 European ancestry cases, 406,111 European ancestry controls	NA	9q34.2	ABO, LCN1P2	rs635634-?	NR	9E-9				NR [~ 8000000] (imputed)	N
1623	chr9	136154999	136155000	rs635634	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9q34.2	NR	rs635634-C	NR	8E-55		0.083	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1623	chr9	136154999	136155000	rs635634	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9q34.2	NR	rs635634-C	0.83	2E-10	(Hispanic)	0.128	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1623	chr9	136154999	136155000	rs635634	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9q34.2	NR	rs635634-C	0.806	3E-42	(EA)	0.079	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1623	chr9	136154999	136155000	rs635634	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9q34.2	NR	rs635634-C	NR	5E-66		0.093	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1623	chr9	136154999	136155000	rs635634	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9q34.2	NR	rs635634-C	0.83	4E-14	(Hispanic)	0.152	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1623	chr9	136154999	136155000	rs635634	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9q34.2	NR	rs635634-C	0.806	4E-49	(EA)	0.088	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1623	chr9	136154999	136155000	rs635634	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	9q34.2	NR	rs635634-C	0.793	3E-7	(East Asian)	0.101	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1623	chr9	136154999	136155000	rs635634	29093273	Almgren P	2017-11-02	JCI Insight	Genetic determinants of circulating GIP and GLP-1 concentrations.	GIP levels in response to oral glucose tolerance test (120 minutes)	3,344 Swedish ancestry individuals	4,905 Finnish ancestry individuals	9q34.2	ABO	rs635634-T	0.195	7E-14		0.07	[0.052-0.088] unit decrease	Illumina [at least 81396]	N
1623	chr9	136154999	136155000	rs635634	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	9q34.2	NR	rs635634-T	NR	2E-9		0.0305428	[0.02-0.041] unit increase	Affymetrix [16832071] (imputed)	N
1623	chr9	136154999	136155000	rs635634	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	9q34.2	ABO, SURF6	rs635634-T	0.2	8E-9		1.06	[1.05-1.07]	Illumina [at least 560000] (imputed)	N
1623	chr9	136154999	136155000	rs635634	28566273	Scott RA	2017-05-31	Diabetes	An Expanded Genome-Wide Association Study of Type 2 Diabetes in Europeans.	Type 2 diabetes	up to 26,676 European ancestry cases, up to 132,532 European ancestry controls	14,545 European ancestry cases, 38,994 European ancestry controls	9q34.2	ABO	rs635634-T	0.18	2E-8		1.08	[1.05-1.10]	Affymetrix, Illumina [at least 11579618] (imputed)	N
1623	chr9	136154999	136155000	rs635634	28369058	Folkersen L	2017-04-03	PLoS Genet	Mapping of 79 loci for 83 plasma protein biomarkers in cardiovascular disease.	Blood protein levels in cardiovascular risk	3,394 European ancestry individuals	2,639 individuals	9q34.2	intergenic	rs635634-T	0.22	7E-125		0.41	unit decrease	Illumina [5270624] (imputed)	N
1623	chr9	136154999	136155000	rs635634	28369058	Folkersen L	2017-04-03	PLoS Genet	Mapping of 79 loci for 83 plasma protein biomarkers in cardiovascular disease.	Blood protein levels in cardiovascular risk	3,394 European ancestry individuals	2,639 individuals	9q34.2	SURF6	rs635634-T	0.22	1E-256		0.86	unit decrease	Illumina [5270624] (imputed)	N
1623	chr9	136154999	136155000	rs635634	27997041	Traylor M	2016-12-20	Ann Neurol	Genetic variation at 16q24.2 is associated with small vessel stroke.	Ischemic stroke	10,210 European ancestry cases, 12,285 European ancestry controls	7,743 European ancestry cases, 17,970 European ancestry controls	9q34.2	NR	rs635634-?	NR	5E-9		5.86	z score increase	Affymetrix, Illumina [NR] (imputed)	N
1623	chr9	136154999	136155000	rs635634	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Stem cell factor levels	8,290 Finnish ancestry individuals	NA	9q34.2	NR	rs635634-C		7E-8		0.1032	[0.066-0.141] SD units increase	NR [10700000] (imputed)	N
1623	chr9	136154999	136155000	rs635634	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	9q34.2	ABO	rs635634-T	0.1824	2E-20		0.0430554	[0.034-0.052] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1623	chr9	136154999	136155000	rs635634	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	9q34.2	ABO	rs635634-T	0.1824	1E-19		0.04200489	[0.033-0.051] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1623	chr9	136154999	136155000	rs635634	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	9q34.2	ABO	rs635634-T	0.1824	4E-19		0.04146991	[0.032-0.051] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1623	chr9	136154999	136155000	rs635634	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	9q34.2	ABO	rs635634-T	0.1825	8E-19		0.04100896	[0.032-0.05] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1623	chr9	136154999	136155000	rs635634	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	9q34.2	ABO	rs635634-T	0.1825	8E-23		0.04578683	[0.037-0.055] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1623	chr9	136154999	136155000	rs635634	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	9q34.2	ABO	rs635634-T	0.1824	5E-20		0.04251764	[0.033-0.052] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1623	chr9	136154999	136155000	rs635634	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	9q34.2	ABO, SURF6	rs635634-?	NR	9E-9		1.06	[1.039-1.081]	Illumina [13757430] (imputed)	N
1623	chr9	136154999	136155000	rs635634	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	LDL cholesterol	95,454 European ancestry individuals	NA	9q34.2	ABO	rs635634-T	0.22	8E-22		2.05	[1.64-2.46] mg/dL increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1623	chr9	136154999	136155000	rs635634	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	Cholesterol, total	100,184 European ancestry individuals	NA	9q34.2	ABO	rs635634-T	0.21	9E-21		2.3	[1.81-2.79] mg/dL increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1623	chr9	136155358	136155359	rs7030248	24941225	Liang Y	2014-06-18	PLoS One	Genetic variations affecting serum carcinoembryonic antigen levels and status of regional lymph nodes in patients with sporadic colorectal cancer from Southern China.	Elevated serum carcinoembryonic antigen levels	1,999 Chinese ancestry individuals	NA	9q34.2	intergenic	rs7030248-?		4E-15				Illumina [709211] (imputed)	N
1623	chr9	136155443	136155444	rs633862	25134534	Chen K	2014-08-19	Nat Commun	Genome-wide association study identifies new susceptibility loci for epithelial ovarian cancer in Han Chinese women.	Epithelial ovarian cancer	1,044 Han Chinese ancestry cases, 1,172 Han Chinese ancestry controls	1,452 Han Chinese ancestry cases, 2,803 Han Chinese ancestry controls	9q34.2	SURF6, ABO	rs633862-A	0.54	9E-7		1.19	[1.02-1.39]	Illumina [710714]	N
1623	chr9	136157132	136157133	rs558240	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	9q34.2		rs558240-G	0.603	3E-9				Affymetrix [10369434] (imputed)	N
1623	chr9	136164592	136164593	rs176694	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	E-selectin levels	21,758 European ancestry individuals	9,173 individuals	9q34.2		rs176694-T	0.9	1E-406		0.542	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1623	chr9	136166345	136166346	rs7025162	24094242	Li J	2013-10-05	BMC Genomics	Genome-wide association study on serum alkaline phosphatase levels in a Chinese population.	Serum alkaline phosphatase levels	1,452 Han Chinese ancestry individuals	8,830 Han Chinese ancestry individuals	9q34.2	SURF6, ABO	rs7025162-A	0.384	3E-27		0.047	[0.039-0.055] U/L decrease	Affymetrix [658288]	N
1623	chr9	136177393	136177394	rs656105	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	9q34.2	ABO	rs656105-?	NR	4E-73				Affymetrix, Illumina [10537485] (imputed)	N
1623	chr9	136177393	136177394	rs656105	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	9q34.2	ABO	rs656105-?	NR	1E-66	(EA)			Affymetrix, Illumina [10537485] (imputed)	N
1623	chr9	136178276	136178277	rs4962127	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	9q34.2	NR	rs4962127-A	NR	4E-49		0.0831	[0.072-0.094] unit increase	Affymetrix [9000000] (imputed)	N
1623	chr9	136178820	136178821	rs574237	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	Factor VIII levels	25,897 European ancestry individuals, 4,500 African American individuals, 773 Asian ancestry individuals, 1,440 Hispanic individuals	NA	9q34.2	intergenic	rs574237-?	NR	7E-38				Affymetrix, Illumina [13887196] (imputed)	N
1623	chr9	136178820	136178821	rs574237	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	Factor VIII levels	25,897 European ancestry individuals, 4,500 African American individuals, 773 Asian ancestry individuals, 1,440 Hispanic individuals	NA	9q34.2	intergenic	rs574237-?	NR	3E-29	(EA)			Affymetrix, Illumina [13887196] (imputed)	N
1623	chr9	136181538	136181539	rs551924	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	Factor VIII levels	25,897 European ancestry individuals, 4,500 African American individuals, 773 Asian ancestry individuals, 1,440 Hispanic individuals	NA	9q34.2	intergenic	rs551924-?	NR	9E-75				Affymetrix, Illumina [13887196] (imputed)	N
1623	chr9	136181538	136181539	rs551924	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	Factor VIII levels	25,897 European ancestry individuals, 4,500 African American individuals, 773 Asian ancestry individuals, 1,440 Hispanic individuals	NA	9q34.2	intergenic	rs551924-?	NR	3E-48	(EA)			Affymetrix, Illumina [13887196] (imputed)	N
1623	chr9	136182474	136182475	rs75444660	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL27RA	5,361 Icelandic ancestry individuals	NA	9q34.2		rs75444660-G	0.06073	1E-24		0.405749	[0.33-0.48] unit increase	Illumina [7506463] (imputed)	N
1623	chr9	136182474	136182475	rs75444660	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	9q34.2	LCN1P2	rs75444660-G	0.050816	1E-22		0.05006947	[0.04-0.06] unit decrease	Affymetrix [93095623] (imputed)	N
1624	chr9	136184771	136184774	rs72449624	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Angiopoietin-1 receptor levels	21,758 European ancestry individuals	9,173 individuals	9q34.2		rs72449624-A	0.095	2E-24		0.1674	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1624	chr9	136185323	136185324	rs11789139	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	9q34.2		rs11789139-G	NR	7E-10		0.0187	[0.013-0.025] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
1624	chr9	136187162	136187163	rs493014	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	9q34.2	NR	rs493014-T	NR	2E-48		0.0378	[0.033-0.043] unit increase	Affymetrix [9000000] (imputed)	N
1624	chr9	136187619	136187620	rs9411508	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	9q34.2	NR	rs9411508-A	NR	2E-18		0.0778	[0.06-0.095] unit increase	Affymetrix [9000000] (imputed)	N
1624	chr9	136191009	136191010	rs11244084	30306274	Shah RL	2018-10-10	Hum Genet	Genome-wide association studies for corneal and refractive astigmatism in UK Biobank demonstrate a shared role for myopia susceptibility loci.	Refractive astigmatism	88,005 European ancestry individuals		9q34.2	LCN1P2	rs11244084-T	NR	2E-7		0.032	[0.02-0.044] dioptres increase	NR [5900115] (imputed)	N
1624	chr9	136191009	136191010	rs11244084	30306274	Shah RL	2018-10-10	Hum Genet	Genome-wide association studies for corneal and refractive astigmatism in UK Biobank demonstrate a shared role for myopia susceptibility loci.	Refractive astigmatism	70,505 European ancestry cases, 17,500 European ancestry controls	NA	9q34.2	LCN1P2	rs11244084-C	NR	2E-6		1.1135857	[1.06-1.17]	NR [5919636] (imputed)	N
1624	chr9	136195606	136195607	rs4962130	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	9q34.2	SURF6, RP11-244N20.7, MED22, Y_RNA	rs4962130-C	0.01405622	1E-12	(EA, A disintegrin and metalloproteinase with thrombospondin motifs 13)	1.308	[0.95-1.66] unit decrease	Affymetrix [509946]	N
1624	chr9	136198588	136198589	rs10793964	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	9q34.2	NR	rs10793964-G	NR	3E-59		0.0392	[0.034-0.044] unit increase	Affymetrix [9000000] (imputed)	N
1624	chr9	136207217	136207218	rs607900	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	Factor VIII levels	25,897 European ancestry individuals, 4,500 African American individuals, 773 Asian ancestry individuals, 1,440 Hispanic individuals	NA	9q34.2	intergenic	rs607900-?	NR	3E-15				Affymetrix, Illumina [13887196] (imputed)	N
1624	chr9	136209318	136209319	rs7870707	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	9q34.2	NR	rs7870707-C	NR	2E-99		0.06	[0.055-0.065] unit decrease	Affymetrix [9000000] (imputed)	N
1624	chr9	136227212	136227213	rs141313898	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	9q34.2	NR	rs141313898-G	NR	1E-17		0.2028	[0.16-0.25] unit decrease	Affymetrix [9000000] (imputed)	N
1624	chr9	136228006	136228007	rs61751475	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	9q34.2	NR	rs61751475-T	NR	6E-27		0.0741	[0.061-0.088] unit increase	Affymetrix [9000000] (imputed)	N
1624	chr9	136239398	136239399	rs3758348	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	9q34.2	NR	rs3758348-?	NR	3E-21	(PECAM-1)	0.684233	[0.54-0.83] unit decrease	Illumina [11901634] (imputed)	N
1624	chr9	136243269	136243270	rs28493251	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	9q34.2	NR	rs28493251-A	0.89421875	9E-68	(ADAMTS13, 3175_51_5)	0.68773556	[0.61-0.76] unit increase	Illumina [> 1000000] (imputed)	N
1624	chr9	136243269	136243270	rs28493251	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	9q34.2	NR	rs28493251-A	0.89421875	8E-24	(ABO, 9253_52_3)	0.4127566	[0.33-0.49] unit increase	Illumina [> 1000000] (imputed)	N
1624	chr9	136243323	136243324	rs3739893	29296746	Ma Q	2017-06-19	Blood Adv	Genetic variants in ADAMTS13 as well as smoking are major determinants of plasma ADAMTS13 levels.	ADAMTS13 levels	3,238 European ancestry individuals	NA	9q34.2	ADAMTS13	rs3739893-T	0.02	1E-30		22.3	[18.77-25.83] % decrease	Illumina [5821939] (imputed)	N
1624	chr9	136248479	136248480	rs28632066	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	9q34.2	NR	rs28632066-?	NR	9E-10	(TIE2)	0.661099	[0.45-0.87] unit increase	Illumina [11901634] (imputed)	N
1624	chr9	136255148	136255149	rs62575992	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	Factor VIII levels	25,897 European ancestry individuals, 4,500 African American individuals, 773 Asian ancestry individuals, 1,440 Hispanic individuals	NA	9q34.2	intergenic	rs62575992-?	NR	8E-45				Affymetrix, Illumina [13887196] (imputed)	N
1624	chr9	136255148	136255149	rs62575992	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	Factor VIII levels	25,897 European ancestry individuals, 4,500 African American individuals, 773 Asian ancestry individuals, 1,440 Hispanic individuals	NA	9q34.2	intergenic	rs62575992-?	NR	3E-42	(EA)			Affymetrix, Illumina [13887196] (imputed)	N
1624	chr9	136255928	136255929	rs117537850	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	9q34.2		rs117537850-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1624	chr9	136255928	136255929	rs117537850	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	9q34.2		rs117537850-?	NR	4E-17				NR [~ 8900000] (imputed)	N
1624	chr9	136267148	136267149	rs17474001	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	9q34.2	NR	rs17474001-?	NR	1E-24	(E-selectin)	0.7486	[0.61-0.89] unit decrease	Illumina [11901634] (imputed)	N
1624	chr9	136270537	136270538	rs41302673	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	9q34.2	NR	rs41302673-G	NR	6E-47		0.0601	[0.052-0.068] unit increase	Affymetrix [9000000] (imputed)	N
1624	chr9	136270537	136270538	rs41302673	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	9q34.2	NR	rs41302673-G	NR	8E-722		0.2393	[0.23-0.25] unit decrease	Affymetrix [9000000] (imputed)	N
1624	chr9	136270537	136270538	rs41302673	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	9q34.2	NR	rs41302673-G	NR	2E-47		0.0605	[0.052-0.069] unit increase	Affymetrix [9000000] (imputed)	N
1624	chr9	136270537	136270538	rs41302673	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	9q34.2	NR	rs41302673-G	NR	6E-19		0.038	[0.03-0.046] unit increase	Affymetrix [9000000] (imputed)	N
1624	chr9	136270537	136270538	rs41302673	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	9q34.2	NR	rs41302673-G	NR	4E-14		0.0316	[0.023-0.04] unit increase	Affymetrix [9000000] (imputed)	N
1624	chr9	136270537	136270538	rs41302673	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	9q34.2	NR	rs41302673-G	NR	9E-10		0.0268	[0.018-0.035] unit increase	Affymetrix [9000000] (imputed)	N
1624	chr9	136270537	136270538	rs41302673	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	9q34.2	NR	rs41302673-G	NR	2E-29		0.0472	[0.039-0.055] unit decrease	Affymetrix [9000000] (imputed)	N
1624	chr9	136270537	136270538	rs41302673	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	9q34.2	NR	rs41302673-G	NR	2E-16		0.0345	[0.026-0.043] unit decrease	Affymetrix [9000000] (imputed)	N
1624	chr9	136270537	136270538	rs41302673	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	9q34.2	NR	rs41302673-G	NR	5E-29		0.0468	[0.039-0.055] unit increase	Affymetrix [9000000] (imputed)	N
1624	chr9	136270537	136270538	rs41302673	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	9q34.2	STKLD1	rs41302673-G		2E-47		0.056	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
1624	chr9	136270537	136270538	rs41302673	32152699	Nudel R	2020-03-09	Hum Genet	A large population-based investigation into the genetics of susceptibility to gastrointestinal infections and the link between gastrointestinal infections and mental illness.	Gastrointestinal infection	7,197 Danish ancestry cases, 37,062 Danish ancestry controls	NA	9q34.2	NR	rs41302673-G	NR	5E-7		1.169	[1.11-1.23]	Illumina [11600722] (imputed)	N
1624	chr9	136275140	136275141	rs4962144	29234017	Carayol J	2017-12-12	Nat Commun	Protein quantitative trait locus study in obesity during weight-loss identifies a leptin regulator.	Protein levels in obesity	494 European ancestry individuals	NA	9q34.2	NR	rs4962144-?	NR	7E-23	(ATS13)	0.34	[0.27-0.41] unit decrease	Illumina [4020654] (imputed)	N
1624	chr9	136275228	136275229	rs75685923	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	9q34.2	NR	rs75685923-T	NR	4E-51		0.0866	[0.075-0.098] unit increase	Affymetrix [9000000] (imputed)	N
1624	chr9	136275228	136275229	rs75685923	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Squamous cell lung carcinoma	7,426 European ancestry cases, 55,627 European ancestry controls	NA	9q34.2	REXO4	rs75685923-T	0.032196583	6E-7		1.3846594	[1.218378029-1.57363447]	Illumina [10439017] (imputed)	N
1624	chr9	136278834	136278835	rs28699275	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	9q34.2	NR	rs28699275-T	NR	7E-27		0.0732	[0.06-0.087] unit increase	Affymetrix [9000000] (imputed)	N
1624	chr9	136278869	136278870	rs3118662	34202464	Wang M	2021-06-24	Genes (Basel)	Genomic Association vs. Serological Determination of ABO Blood Types in a Chinese Cohort, with Application in Mendelian Randomization.	ABO blood group (O vs non-O)	up to 356 Han Chinese ancestry individuals with O blood group, up to 622 Han Chinese ancestry individuals with non-O blood group	NA	9q34.2	REXO4	rs3118662-A	0.484	3E-28		3.8	[NR]	Affymetrix [733907]	N
1624	chr9	136278869	136278870	rs3118662	34202464	Wang M	2021-06-24	Genes (Basel)	Genomic Association vs. Serological Determination of ABO Blood Types in a Chinese Cohort, with Application in Mendelian Randomization.	ABO blood group (B vs non-B)	up to 253 Han Chinese ancestry individuals with B blood group, up to 755 Han Chinese ancestry individuals with non-B blood group	NA	9q34.2	REXO4	rs3118662-A	0.484	8E-9		0.5	[NR]	Affymetrix [733907]	N
1624	chr9	136278869	136278870	rs3118662	34202464	Wang M	2021-06-24	Genes (Basel)	Genomic Association vs. Serological Determination of ABO Blood Types in a Chinese Cohort, with Application in Mendelian Randomization.	ABO blood group (B vs O)	up to 235 Han Chinese ancestry individuals with B blood group, up to 356 Han Chinese ancestry individuals with O blood group	NA	9q34.2	REXO4	rs3118662-A	0.484	4E-22		0.2	[NR]	Affymetrix [733907]	N
1624	chr9	136278869	136278870	rs3118662	34202464	Wang M	2021-06-24	Genes (Basel)	Genomic Association vs. Serological Determination of ABO Blood Types in a Chinese Cohort, with Application in Mendelian Randomization.	ABO blood group (AB vs non-AB)	up to 77 Han Chinese ancestry individuals with AB blood group, up to 931 Han Chinese ancestry individuals with non-AB blood group	NA	9q34.2	REXO4	rs3118662-A	0.484	3E-8		0.3	[NR]	Affymetrix [733907]	N
1624	chr9	136278869	136278870	rs3118662	34202464	Wang M	2021-06-24	Genes (Basel)	Genomic Association vs. Serological Determination of ABO Blood Types in a Chinese Cohort, with Application in Mendelian Randomization.	ABO blood group (AB vs O)	up to 77 Han Chinese ancestry individuals with AB blood group, up to 356 individuals with O blood group	NA	9q34.2	REXO4	rs3118662-A	0.484	6E-18		0.1	[NR]	Affymetrix [733907]	N
1624	chr9	136278869	136278870	rs3118662	34202464	Wang M	2021-06-24	Genes (Basel)	Genomic Association vs. Serological Determination of ABO Blood Types in a Chinese Cohort, with Application in Mendelian Randomization.	ABO blood group (A vs O)	up to 322 Han Chinese ancestry individuals with A blood group, up to 356 Han Chinese ancestry individuals with A blood group	NA	9q34.2	REXO4	rs3118662-A	0.484	2E-17		0.3		Affymetrix [733907]	N
1624	chr9	136281752	136281753	rs3118663	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	9q34.2	SURF2, SURF1, REXO4, SURF6, MED22, RP11-244N20.7, ADAMTS13, Y_RNA, SNORD24, RPL7A, SNORD36B, SNORD36A, AL593848.2, SNORD36C, SURF4	rs3118663-A	0.4914228	1E-20	(EA, A disintegrin and metalloproteinase with thrombospondin motifs 13)	0.3945	[0.31-0.48] unit increase	Affymetrix [509946]	N
1624	chr9	136289422	136289423	rs35410697	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	9q34.2	NR	rs35410697-T	NR	1E-33		0.0577	[0.048-0.067] unit increase	Affymetrix [9000000] (imputed)	N
1624	chr9	136291062	136291063	rs3118667	25934476	de Vries PS	2015-05-01	Blood	Genetic variants in the ADAMTS13 and SUPT3H genes are associated with ADAMTS13 activity.	ADAMTS13 activity	3,423 European ancestry individuals	2,025 European ancestry individuals	9q34.2	ADAMTS13	rs3118667-C	0.47	1E-20	(Conditional on rs41314453 and rs10456544)	3.0	unit increase	Illumina [8237900] (imputed)	N
1624	chr9	136291360	136291361	rs34054981	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ADAMTS13	5,359 Icelandic ancestry individuals	NA	9q34.2		rs34054981-T	0.1068	5E-122		0.689733	[0.63-0.75] unit decrease	Illumina [7506463] (imputed)	N
1624	chr9	136293065	136293066	rs3758349	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q34.2	NR	rs3758349-C	0.434	6E-74	(A disintegrin and metalloproteinase with thrombospondin motifs 13, ADAMTS13.3175.51.5)	0.43	[0.39-0.47] unit decrease	Affymetrix [10572788] (imputed)	N
1624	chr9	136298130	136298131	rs71503194	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q34.2	ADAMTS13	rs71503194-G	0.091	4E-103	(A disintegrin and metalloproteinase with thrombospondin motifs 13, ADAMTS13.3175.51.5)	0.87	[0.79-0.95] unit decrease	Affymetrix [10572788] (imputed)	N
1624	chr9	136299719	136299720	rs72779210	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q34.2	NR	rs72779210-T	0.033	6E-31	(A disintegrin and metalloproteinase with thrombospondin motifs 13, ADAMTS13.3175.51.5)	0.79	[0.65-0.93] unit increase	Affymetrix [10572788] (imputed)	N
1624	chr9	136302009	136302010	rs36220240	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ADAMTS13	5,359 Icelandic ancestry individuals	NA	9q34.2		rs36220240-T	0.01087	4E-9		0.533447	[0.36-0.71] unit decrease	Illumina [7506463] (imputed)	N
1624	chr9	136302433	136302434	rs3780808	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	9q34.2		rs3780808-T	0.42	1E-11		6.8	z score increase	Affymetrix [9061022] (imputed)	N
1624	chr9	136304113	136304114	rs74715985	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ADAMTS13	5,359 Icelandic ancestry individuals	NA	9q34.2		rs74715985-G	0.02095	2E-80		1.23936	[1.11-1.37] unit decrease	Illumina [7506463] (imputed)	N
1624	chr9	136304890	136304891	rs41296094	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	9q34.2	NR	rs41296094-C	NR	3E-27		0.0667	[0.055-0.079] unit increase	Affymetrix [9000000] (imputed)	N
1624	chr9	136305274	136305275	rs2073933	29559738	Sasayama D	2018-03-20	J Hum Genet	A genome-wide association study on photic sneeze syndrome in a Japanese population.	Photic sneeze reflex	360 Japanese ancestry cases, 11,049 Japanese ancestry controls	NA	9q34.2		rs2073933-C	NR	1E-6		1.713	[1.379-2.218]	Illumina [210086]	N
1624	chr9	136305529	136305530	rs28647808	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	9q34.2	NR	rs28647808-?	NR	3E-42	(EA, A disintegrin and metalloproteinase with thrombospondin motifs 13)			Affymetrix [509946]	N
1624	chr9	136307824	136307825	rs41314453	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q34.2	NR	rs41314453-T	0.017	2E-56	(A disintegrin and metalloproteinase with thrombospondin motifs 13, ADAMTS13.3175.51.5)	1.44	[1.26-1.62] unit decrease	Affymetrix [10572788] (imputed)	N
1624	chr9	136307824	136307825	rs41314453	25934476	de Vries PS	2015-05-01	Blood	Genetic variants in the ADAMTS13 and SUPT3H genes are associated with ADAMTS13 activity.	ADAMTS13 activity	3,423 European ancestry individuals	2,025 European ancestry individuals	9q34.2	ADAMTS13	rs41314453-T	0.0188	1E-63		21.7	unit decrease	Illumina [8237900] (imputed)	N
1624	chr9	136308795	136308796	rs28446901	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 157,769 European ancestry controls	NA	9q34.2	NR	rs28446901-?	NR	2E-87		0.2788	[0.25-0.31] unit decrease	Affymetrix, Illumina [12923718] (imputed)	N
1624	chr9	136308795	136308796	rs28446901	30217807	Robinson-Cohen C	2018-09-14	J Am Soc Nephrol	Genetic Variants Associated with Circulating Fibroblast Growth Factor 23.	Circulating fibroblast growth factor 23 levels	16,624 European ancestry individuals	4,443 African ancestry individuals	9q34.2	ADAMTS13	rs28446901-C	0.8145	1E-7	(EA)	0.03	[0.018-0.042] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1624	chr9	136312455	136312456	rs28673647	29296746	Ma Q	2017-06-19	Blood Adv	Genetic variants in ADAMTS13 as well as smoking are major determinants of plasma ADAMTS13 levels.	ADAMTS13 levels	3,238 European ancestry individuals	NA	9q34.2	ADAMTS13	rs28673647-G	0.38	1E-57		7.1	[6.12-8.08] % increase	Illumina [5821939] (imputed)	N
1624	chr9	136314676	136314677	rs2301613	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	9q34.2	ADAMTS13	rs2301613-G	0.381243	9E-11		0.014894974	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
1625	chr9	136316366	136316367	rs28680325	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	9q34.2	ABO	rs28680325-?	NR	3E-10				Affymetrix, Illumina [10537485] (imputed)	N
1625	chr9	136316366	136316367	rs28680325	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	9q34.2	ABO	rs28680325-?	NR	1E-9	(EA)			Affymetrix, Illumina [10537485] (imputed)	N
1625	chr9	136317766	136317767	rs117164445	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	9q34.2	NR	rs117164445-T	NR	4E-9		0.0573	[0.038-0.076] unit increase	Affymetrix [9000000] (imputed)	N
1625	chr9	136317766	136317767	rs117164445	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	9q34.2	NR	rs117164445-T	NR	2E-114		0.2212	[0.2-0.24] unit decrease	Affymetrix [9000000] (imputed)	N
1625	chr9	136319588	136319589	rs28503257	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	9q34.2	NR	rs28503257-A	NR	6E-64		0.1022	[0.09-0.114] unit decrease	Affymetrix [9000000] (imputed)	N
1625	chr9	136323753	136323754	rs4962153	28495826	Williams SR	2017-06-01	Stroke	Genetic Drivers of von Willebrand Factor Levels in an Ischemic Stroke Population and Association With Risk for Recurrent Stroke.	vWF levels in ischaemic stroke and hyperhomocysteinaemia	1,931 European and unknown ancestry individuals	NA	9q34.2	ADAMTS13	rs4962153-?	NR	6E-8				NR [NR] (imputed)	N
1625	chr9	136323753	136323754	rs4962153	27694959	Bonder MJ	2016-10-03	Nat Genet	The effect of host genetics on the gut microbiome.	Gut microbiota (functional units)	984 European ancestry individuals	530 European ancestry individuals	9q34.2	ADAMTS13, CACFD1, SLC2A6	rs4962153-A	NR	3E-6	(GO:0048598|BP|03|embryonic morphogenesis)	4.6572533	Z-score decrease	Illumina [8100000] (imputed)	N
1625	chr9	136323753	136323754	rs4962153	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	9q34.2	NR	rs4962153-?		6E-22	(PECAM1)	0.4346	[NR] unit decrease	Illumina [NR]	N
1625	chr9	136323753	136323754	rs4962153	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	9q34.2	NR	rs4962153-?		5E-35	(SELE)	0.6212	[NR] unit decrease	Illumina [NR]	N
1625	chr9	136323753	136323754	rs4962153	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	9q34.2	NR	rs4962153-?		3E-13	(HGF)	0.5582	[NR] unit increase	Illumina [NR]	N
1625	chr9	136323753	136323754	rs4962153	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	9q34.2	NR	rs4962153-?		1E-10	(VWF)	0.2842	[NR] unit increase	Illumina [NR]	N
1625	chr9	136323753	136323754	rs4962153	18940312	Yuan X	2008-10-10	Am J Hum Genet	Population-based genome-wide association studies reveal six loci influencing plasma levels of liver enzymes.	Liver enzyme levels	7,751 European ancestry individuals	1,005 European ancestry individuals, 3,669 Asian Indian ancestry individuals	9q34.2	ADAMTS13	rs4962153-A	NR	8E-21	(ALP)	0.06	[0.048-0.072] U/L decrease	Affymetrix, Illumina [up to 496032]	N
1625	chr9	136323844	136323845	rs4962050	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	9q34.2	NR	rs4962050-C	NR	4E-10		0.0161	[0.011-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
1625	chr9	136323844	136323845	rs4962050	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	9q34.2	NR	rs4962050-C	NR	1E-181		0.0738	[0.069-0.079] unit increase	Affymetrix [9000000] (imputed)	N
1625	chr9	136323844	136323845	rs4962050	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	9q34.2	NR	rs4962050-C	NR	3E-12		0.0179	[0.013-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
1625	chr9	136323844	136323845	rs4962050	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	9q34.2	NR	rs4962050-C	NR	2E-14		0.0202	[0.015-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
1625	chr9	136328656	136328657	rs3124765	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	9q34.2	NR	rs3124765-C	0.8475	2E-6	(EA)	0.0437	[0.026-0.062] unit decrease	Illumina [~ 11800000] (imputed)	N
1625	chr9	136337167	136337168	rs3094378	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	9q34.2	NR	rs3094378-A	NR	6E-52		0.0632	[0.055-0.071] unit increase	Affymetrix [9000000] (imputed)	N
1625	chr9	136338186	136338187	rs3124762	29296746	Ma Q	2017-06-19	Blood Adv	Genetic variants in ADAMTS13 as well as smoking are major determinants of plasma ADAMTS13 levels.	ADAMTS13 levels	3,238 European ancestry individuals	NA	9q34.2	ADAMTS13	rs3124762-?		9E-9		3.5	[2.32-4.68] % increase	Illumina [5821939] (imputed)	N
1625	chr9	136339754	136339755	rs3124761	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	9q34.2	NR	rs3124761-?	NR	5E-16	(PECAM-1)	0.580209	[0.44-0.72] unit increase	Illumina [11901634] (imputed)	N
1625	chr9	136340435	136340436	rs28393320	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	9q34.2	NR	rs28393320-C	NR	1E-18		0.0497	[0.039-0.061] unit increase	Affymetrix [9000000] (imputed)	N
1625	chr9	136342767	136342768	rs28615428	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ADAMTS13	5,359 Icelandic ancestry individuals	NA	9q34.2		rs28615428-A	0.03624	9E-41		0.668876	[0.57-0.77] unit increase	Illumina [7506463] (imputed)	N
1625	chr9	136344852	136344853	rs3124758	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	Factor VIII levels	25,897 European ancestry individuals, 4,500 African American individuals, 773 Asian ancestry individuals, 1,440 Hispanic individuals	NA	9q34.2	intergenic	rs3124758-?	NR	3E-21	(EA)			Affymetrix, Illumina [13887196] (imputed)	N
1625	chr9	136344852	136344853	rs3124758	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	Factor VIII levels	25,897 European ancestry individuals, 4,500 African American individuals, 773 Asian ancestry individuals, 1,440 Hispanic individuals	NA	9q34.2	intergenic	rs3124758-?	NR	2E-18				Affymetrix, Illumina [13887196] (imputed)	N
1625	chr9	136347831	136347832	rs72779222	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	9q34.2	NR	rs72779222-C	NR	2E-39		0.0647	[0.055-0.074] unit increase	Affymetrix [9000000] (imputed)	N
1625	chr9	136347831	136347832	rs72779222	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	E-selectin levels	21,758 European ancestry individuals	9,173 individuals	9q34.2		rs72779222-T	0.94	2E-14		0.1307	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1625	chr9	136353349	136353350	rs28517799	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	9q34.2	NR	rs28517799-A	NR	2E-25		0.0579	[0.047-0.069] unit decrease	Affymetrix [9000000] (imputed)	N
1625	chr9	136359598	136359599	rs73553519	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	9q34.2	NR	rs73553519-T	NR	3E-21		0.0386	[0.031-0.047] unit increase	Affymetrix [9000000] (imputed)	N
1625	chr9	136359598	136359599	rs73553519	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	9q34.2	NR	rs73553519-T	NR	1E-244		0.1363	[0.13-0.14] unit decrease	Affymetrix [9000000] (imputed)	N
1625	chr9	136359598	136359599	rs73553519	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	9q34.2	NR	rs73553519-T	NR	3E-21		0.0386	[0.031-0.047] unit increase	Affymetrix [9000000] (imputed)	N
1625	chr9	136359598	136359599	rs73553519	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	9q34.2	NR	rs73553519-T	NR	9E-15		0.0317	[0.024-0.04] unit decrease	Affymetrix [9000000] (imputed)	N
1625	chr9	136359598	136359599	rs73553519	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	9q34.2	NR	rs73553519-T	NR	3E-14		0.0312	[0.023-0.039] unit increase	Affymetrix [9000000] (imputed)	N
1625	chr9	136362671	136362672	rs76474909	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	9q34.2	NR	rs76474909-T	NR	3E-63		0.0581	[0.051-0.065] unit increase	Affymetrix [9000000] (imputed)	N
1625	chr9	136371223	136371224	rs9330459	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	9q34.2	NR	rs9330459-G	NR	2E-12		0.0436	[0.031-0.056] unit decrease	Affymetrix [9000000] (imputed)	N
1625	chr9	136371223	136371224	rs9330459	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	9q34.2	NR	rs9330459-G	NR	1E-145		0.1582	[0.15-0.17] unit increase	Affymetrix [9000000] (imputed)	N
1625	chr9	136371223	136371224	rs9330459	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	9q34.2	NR	rs9330459-G	NR	1E-11		0.0418	[0.03-0.054] unit decrease	Affymetrix [9000000] (imputed)	N
1625	chr9	136371223	136371224	rs9330459	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	9q34.2	NR	rs9330459-G	NR	6E-11		0.0404	[0.028-0.053] unit increase	Affymetrix [9000000] (imputed)	N
1625	chr9	136371267	136371268	rs117816992	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	9q34.2	NR	rs117816992-?	NR	4E-6		0.1473	[0.085-0.209] unit decrease	Illumina [at least 560000] (imputed)	N
1625	chr9	136385087	136385088	rs9330462	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9q34.2		rs9330462-?	NR	1E-19				NR [~ 8900000] (imputed)	N
1625	chr9	136385553	136385554	rs72779234	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Smoking x traumatic event in childhood (felt hated by family member) interaction	124,481 European ancestry individuals	NA	9q34.2		rs72779234-?	NR	7E-9		1.022	[0.68-1.37] unit increase	Affymetrix [NR] (imputed)	N
1625	chr9	136387798	136387799	rs118077853	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	9q34.2	NR	rs118077853-A	NR	2E-18		0.0753	[0.058-0.092] unit increase	Affymetrix [9000000] (imputed)	N
1625	chr9	136388478	136388479	rs116856166	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	9q34.2	NR	rs116856166-A	NR	2E-28		0.0878	[0.072-0.103] unit increase	Affymetrix [9000000] (imputed)	N
1625	chr9	136388701	136388702	rs13289928	34202464	Wang M	2021-06-24	Genes (Basel)	Genomic Association vs. Serological Determination of ABO Blood Types in a Chinese Cohort, with Application in Mendelian Randomization.	ABO blood group (A vs non-A)	up to 322 Han Chinese ancestry individuals with A blood group, up to 686 Han Chinese ancestry individuals with non-A blood group	NA	9q34.2	MYMK	rs13289928-A	0.28	5E-8		1.8	[NR]	Affymetrix [733907]	N
1625	chr9	136390014	136390015	rs13300181	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	9q34.2	MYMK	rs13300181-A	0.6455	8E-11		0.0122	[0.0085-0.0159] unit increase	Affymetrix [18391927] (imputed)	N
1625	chr9	136390115	136390116	rs2073872	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	9q34.2	TMEM8C	rs2073872-?	NR	2E-10		0.020848336	[0.014-0.027] unit decrease	Illumina [27896057] (imputed)	N
1625	chr9	136398857	136398858	rs756770	34488071	Crist RC	2021-08-28	Drug Alcohol Depend	Analysis of genetic and clinical factors associated with buprenorphine response.	Response to buprenorphine in opioid use disorder	1,609 European ancestry individuals	NA	9q34.2		rs756770-A	NR	8E-6		1.8599	[1.59-2.13]	Affymetrix [NR] (imputed)	N
1625	chr9	136398857	136398858	rs756770	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	9q34.2	NR	rs756770-A	NR	8E-10		0.0263	[0.018-0.035] unit increase	Affymetrix [9000000] (imputed)	N
1625	chr9	136398984	136398985	rs9696458	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	9q34.2		rs9696458-T	NR	3E-18		0.0117	[0.0092-0.0142] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1625	chr9	136401424	136401425	rs11525182	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	9q34.2		rs11525182-A	0.532324	2E-9		0.0126095	[0.0085-0.0167] unit decrease	Illumina [13479295] (imputed)	N
1625	chr9	136403753	136403754	rs1858838	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	9q34.2	NR	rs1858838-C	NR	2E-11		0.0164	[0.012-0.021] unit increase	Affymetrix [9000000] (imputed)	N
1625	chr9	136404565	136404566	rs72779238	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	9q34.2	NR	rs72779238-A	NR	3E-9		0.0563	[0.038-0.075] unit increase	Affymetrix [9000000] (imputed)	N
1625	chr9	136412719	136412720	rs117623774	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	9q34.2	NR	rs117623774-T	NR	7E-11		0.0418	[0.029-0.054] unit decrease	Affymetrix [9000000] (imputed)	N
1626	chr9	136454662	136454663	rs72779268	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	9q34.2	NR	rs72779268-A	NR	2E-15		0.0433	[0.033-0.054] unit decrease	Affymetrix [9000000] (imputed)	N
1626	chr9	136455784	136455785	rs112151537	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	9q34.2	NR	rs112151537-T	NR	4E-12		0.0362	[0.026-0.046] unit increase	Affymetrix [9000000] (imputed)	N
1626	chr9	136459283	136459284	rs3025312	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Cigarettes smoked per day (MTAG)	up to 403,928 European ancestry individuals	NA	9q34.2	NR	rs3025312-A	0.0438	5E-15		0.0422391	[0.032-0.053] unit decrease	NR [9732723] (imputed)	N
1626	chr9	136459542	136459543	rs3025316	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	9q34.2	NR	rs3025316-C	0.108	2E-12		0.0122698	[0.0089-0.0157] unit increase	NR [9732723] (imputed)	N
1626	chr9	136459542	136459543	rs3025316	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	9q34.2		rs3025316-?	NR	5E-14				NR [~ 8900000] (imputed)	N
1626	chr9	136460223	136460224	rs56116178	33144568	Quach BC	2020-11-03	Nat Commun	Expanding the genetic architecture of nicotine dependence and its shared genetics with multiple traits.	Nicotine dependence	46,213 European ancestry individuals, 11,787 African American individuals	31,854 European ancestry individuals, 1,937 individuals	9q34.2	FAM163B, DBH	rs56116178-A	NR	2E-13		0.04	[0.029-0.051] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1626	chr9	136460223	136460224	rs56116178	28972577	Hancock DB	2017-10-03	Mol Psychiatry	Genome-wide association study across European and African American ancestries identifies a SNP in DNMT3B contributing to nicotine dependence.	Nicotine dependence	28,677 European ancestry individuals, 9,925 African American individuals	NA	9q34.2	DBH	rs56116178-G	NR	5E-7	(EA)	0.053	[0.033-0.073] unit increase	Affymetrix, Illumina [~ 18000000] (imputed)	N
1626	chr9	136460223	136460224	rs56116178	28972577	Hancock DB	2017-10-03	Mol Psychiatry	Genome-wide association study across European and African American ancestries identifies a SNP in DNMT3B contributing to nicotine dependence.	Nicotine dependence	28,677 European ancestry individuals, 9,925 African American individuals	NA	9q34.2	DBH	rs56116178-G	NR	5E-7		0.053	[0.033-0.073] unit increase	Affymetrix, Illumina [~ 18000000] (imputed)	N
1626	chr9	136461850	136461851	rs9409844	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking cessation (MTAG)	up to 820,192 European ancestry individuals	NA	9q34.2	NR	rs9409844-A	0.0452	3E-13		0.0273437	[0.02-0.035] unit decrease	NR [9732723] (imputed)	N
1626	chr9	136461850	136461851	rs9409844	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking cessation	up to 547,219 European ancestry individuals	NA	9q34.2	NR	rs9409844-A	0.04523	4E-10	(Conditioned on chr9:136473572, chr9:136467344)	0.05856133	[0.04-0.077] unit decrease	NR [~ 10000000] (imputed)	N
1626	chr9	136463018	136463019	rs113382419	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking cessation	450,129 European ancestry individuals	NA	9q34.2	FAM163B, DBH	rs113382419-C		1E-27		0.922	[NR]	Affymetrix [up to 79000000] (imputed)	N
1626	chr9	136463018	136463019	rs113382419	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	9q34.2		rs113382419-C	0.889	3E-37		0.041	[0.035-0.047] unit decrease	Affymetrix [up to 90000000] (imputed)	N
1626	chr9	136467343	136467344	rs3025327	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking status (current vs never)	40,456 European ancestry current smokers, 13,511 African American current smokers, 2,920 Hispanic current smokers, 59,056 European ancestry mostly never smokers, 17,751 African American mostly never smokers, 7,195 Hispanic mostly never smokers	NA	9q34.2	FAM163B, DBH	rs3025327-G		2E-11		0.902	[NR]	Affymetrix [~ 79000000] (imputed)	N
1626	chr9	136467343	136467344	rs3025327	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking cessation (MTAG)	up to 820,192 European ancestry individuals	NA	9q34.2	NR	rs3025327-C	0.107	8E-49		0.036585	[0.032-0.041] unit increase	NR [9732723] (imputed)	N
1626	chr9	136467343	136467344	rs3025327	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking cessation	up to 547,219 European ancestry individuals	NA	9q34.2	NR	rs3025327-C	0.107	1E-35		0.07858633	[0.066-0.091] unit increase	NR [~ 10000000] (imputed)	N
1626	chr9	136467343	136467344	rs3025327	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Cigarettes smoked per day (MTAG)	up to 403,928 European ancestry individuals	NA	9q34.2	NR	rs3025327-C	0.111	2E-40		0.0463005	[0.039-0.053] unit increase	NR [9732723] (imputed)	N
1626	chr9	136468700	136468701	rs75596189	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking behaviour (cigarettes smoked per day)	up to 377,334 European ancestry individuals	NA	9q34.2	NR	rs75596189-T	0.112	2E-20	(Conditioned on chr9:136502369)	0.035800464	[0.028-0.043] unit increase	NR [~ 10000000] (imputed)	N
1626	chr9	136471659	136471660	rs112270518	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking status (current vs mixed)	40,456 European ancestry current smokers, 13,511 African American current smokers, 2,920 Hispanic current smokers, 110,403 European ancestry mixed smokers, 23,605 African American mixed smokers, 11,221 Hispanic mixed smokers	NA	9q34.2	FAM163B, DBH	rs112270518-G		1E-10		0.919	[NR]	Affymetrix [~ 79000000] (imputed)	N
1626	chr9	136473571	136473572	rs10821523	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking cessation (MTAG)	up to 820,192 European ancestry individuals	NA	9q34.2	NR	rs10821523-C	0.536	2E-7		0.00815022	[0.0051-0.0112] unit increase	NR [9732723] (imputed)	N
1626	chr9	136473571	136473572	rs10821523	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking cessation	up to 547,219 European ancestry individuals	NA	9q34.2	NR	rs10821523-C	0.535529	2E-11	(Conditioned on chr9:136467344)	0.026156629	[0.018-0.034] unit increase	NR [~ 10000000] (imputed)	N
1626	chr9	136475182	136475183	rs7020024	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	9q34.2	NR	rs7020024-T	NR	2E-12		0.017	[0.012-0.022] unit increase	Affymetrix [9000000] (imputed)	N
1626	chr9	136478354	136478355	rs3025343	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking behaviour (cigarettes smoked per day)	up to 153,918 European ancestry individuals	NA	9q34.2	DBH	rs3025343-A	0.117	6E-11		0.0368	[0.026-0.048] unit increase	Illumina [~ 250000] (imputed)	N
1626	chr9	136478354	136478355	rs3025343	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking behaviour (cigarette pack-years)	up to 150,993 European ancestry individuals	NA	9q34.2	DBH	rs3025343-A	0.114	2E-21		0.0501	[0.04-0.06] unit increase	Illumina [~ 250000] (imputed)	N
1626	chr9	136478354	136478355	rs3025343	30617275	Erzurumluoglu AM	2019-01-07	Mol Psychiatry	Meta-analysis of up to 622,409 individuals identifies 40 novel smoking behaviour associated genetic loci.	Smoking cessation	121,543 European and South Asian ancestry individuals	up to 275,596 European ancestry individuals	9q34.2	DBH	rs3025343-A	NR	4E-12		0.039	[0.027-0.051] unit increase (replication)	Affymetrix, Illumina [up to 1207583] (imputed)	N
1626	chr9	136478354	136478355	rs3025343	20418890	Tobacco and Genetics Consortium	2010-04-25	Nat Genet	Genome-wide meta-analyses identify multiple loci associated with smoking behavior.	Smoking behavior	Up to 74,035 European ancestry individuals	Up to 68,988 participants	9q34.2	DBH	rs3025343-G	0.84	4E-8	(smoking cessation)	1.12	[1.08-1.18]	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1626	chr9	136481204	136481205	rs3025360	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	9q34.2		rs3025360-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1626	chr9	136493869	136493870	rs117053657	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	9q34.2	NR	rs117053657-G	NR	4E-9		0.0477	[0.032-0.064] unit decrease	Affymetrix [9000000] (imputed)	N
1626	chr9	136501727	136501728	rs77273740	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Diastolic blood pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	9q34.2	NR	rs77273740-T	0.0373	9E-6		0.741	mmHg decrease	Illumina [242296]	N
1626	chr9	136501755	136501756	rs3025380	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	9q34.2		rs3025380-C	NR	9E-10		0.1038	[0.07-0.137] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1626	chr9	136501755	136501756	rs3025380	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Systolic blood pressure	422,713 European ancestry individuals	NA	9q34.2		rs3025380-?	NR	2E-14		0.119536	[0.089-0.15] unit decrease	NR [9800000] (imputed)	N
1626	chr9	136501755	136501756	rs3025380	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Diastolic blood pressure	422,713 European ancestry individuals	NA	9q34.2		rs3025380-?	NR	1E-20		0.144451	[0.11-0.18] unit decrease	NR [9800000] (imputed)	N
1626	chr9	136501755	136501756	rs3025380	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Mean arterial pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	NA	9q34.2	DBH	rs3025380-C	0.00445729053611741	4E-7		1.7480468	[1.07-2.42] unit decrease	Illumina [247039]	N
1626	chr9	136502327	136502328	rs2519143	35264221	Caron B	2022-03-09	Genome Med	Integrative genetic and immune cell analysis of plasma proteins in healthy donors identifies novel associations involving primary immune deficiency genes.	DBH plasma levels	400 French ancestry individuals	NA	9q34.2		rs2519143-G	NR	2E-24		0.778	[0.64-0.91] ng/mL decrease	Illumina [5201092] (imputed)	N
1626	chr9	136502368	136502369	rs3025383	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking behaviour (cigarettes smoked per day)	up to 377,334 European ancestry individuals	NA	9q34.2	NR	rs3025383-C	0.187	1E-23		0.031379756	[0.025-0.037] unit decrease	NR [~ 10000000] (imputed)	N
1626	chr9	136502368	136502369	rs3025383	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Cigarettes smoked per day (MTAG)	up to 403,928 European ancestry individuals	NA	9q34.2	NR	rs3025383-C	0.187	5E-29		0.0314888	[0.026-0.037] unit decrease	NR [9732723] (imputed)	N
1626	chr9	136502368	136502369	rs3025383	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	9q34.2	DBH	rs3025383-T	0.715	4E-6		0.01	unit decrease	Illumina [NR] (imputed)	N
1626	chr9	136502368	136502369	rs3025383	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	9q34.2	DBH	rs3025383-T	0.718	9E-7		0.051	NR unit decrease	Illumina [NR] (imputed)	N
1626	chr9	136502571	136502572	rs13284520	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	9q34.2	DBH	rs13284520-A	0.735	5E-6		0.01	unit decrease	Illumina [NR] (imputed)	N
1626	chr9	136502738	136502739	rs3025385	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	9q34.2	DBH	rs3025385-T	0.259	3E-6		0.01	unit increase	Illumina [NR] (imputed)	N
1626	chr9	136502763	136502764	rs3025386	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Cigarettes smoked per day (current)	17,014 European ancestry individuals	NA	9q34.2		rs3025386-C	NR	1E-8		0.017	NR unit decrease	Affymetrix [~ 79000000] (imputed)	N
1626	chr9	136502763	136502764	rs3025386	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	9q34.2	DBH	rs3025386-T	0.741	3E-6		0.01	unit decrease	Illumina [NR] (imputed)	N
1626	chr9	136502986	136502987	rs3025387	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	9q34.2		rs3025387-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1626	chr9	136502986	136502987	rs3025387	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	9q34.2	DBH	rs3025387-A	0.742	2E-6		0.01	unit decrease	Illumina [NR] (imputed)	N
1626	chr9	136503255	136503256	rs3025388	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking cessation (MTAG)	up to 820,192 European ancestry individuals	NA	9q34.2	NR	rs3025388-G	0.173	3E-16		0.0166063	[0.013-0.021] unit decrease	NR [9732723] (imputed)	N
1626	chr9	136503255	136503256	rs3025388	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	9q34.2	DBH	rs3025388-A	0.252	1E-6		0.01	unit decrease	Illumina [NR] (imputed)	N
1626	chr9	136503255	136503256	rs3025388	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	9q34.2	DBH	rs3025388-A	0.248	4E-6		0.049	NR unit decrease	Illumina [NR] (imputed)	N
1626	chr9	136504073	136504074	rs12001868	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	9q34.2	DBH	rs12001868-G	0.958452	5E-8	(-4 ms)	0.0722821	[0.045-0.1] unit decrease	Affymetrix [10000000] (imputed)	N
1626	chr9	136505240	136505241	rs1108581	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	9q34.2	NR	rs1108581-G	0.2	2E-7		0.91	[0.87-0.95]	Illumina [8468885] (imputed)	N
1626	chr9	136505240	136505241	rs1108581	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Squamous cell lung carcinoma	7,426 European ancestry cases, 55,627 European ancestry controls	NA	9q34.2	DBH	rs1108581-A	0.796639702	9E-7		1.122288	[1.07-1.18]	Illumina [10439017] (imputed)	N
1626	chr9	136505240	136505241	rs1108581	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	9q34.2	DBH	rs1108581-A	0.297	7E-7		0.01	unit decrease	Illumina [NR] (imputed)	N
1626	chr9	136505240	136505241	rs1108581	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	9q34.2	DBH	rs1108581-A	0.292	9E-9		0.058	NR unit decrease	Illumina [NR] (imputed)	N
1626	chr9	136509274	136509275	rs1611124	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking cessation	up to 547,219 European ancestry individuals	NA	9q34.2	NR	rs1611124-T	0.067749	5E-9	(Conditioned on chr9:136461851, chr9:136473572, chr9:136467344)	0.045337558	[0.03-0.061] unit decrease	NR [~ 10000000] (imputed)	N
1626	chr9	136522273	136522274	rs6271	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls, 49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	9q34.2		rs6271-T	NR	3E-10		0.0963	[0.066-0.126] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1626	chr9	136522273	136522274	rs6271	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	9q34.2		rs6271-T	NR	1E-15		0.0348	[0.026-0.043] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
1626	chr9	136522273	136522274	rs6271	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	9q34.2		rs6271-T	NR	4E-14		0.0343	[0.025-0.043] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1626	chr9	136522273	136522274	rs6271	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls	NA	9q34.2	DBH-AS1	rs6271-T	0.0739659	3E-10		0.09634205	[0.066-0.126] unit decrease	Affymetrix [7288503] (imputed)	N
1626	chr9	136522273	136522274	rs6271	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	9q34.2		rs6271-?	NR	6E-19				NR [~ 8900000] (imputed)	N
1626	chr9	136522273	136522274	rs6271	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	9q34.2		rs6271-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1626	chr9	136522273	136522274	rs6271	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	9q34.2	DBH, DBH-AS1	rs6271-T	0.0683	9E-10		0.4113	[0.28-0.54] mmHg decrease	Affymetrix [NR] (imputed)	N
1626	chr9	136522273	136522274	rs6271	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Diastolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	9q34.2	DBH	rs6271-T	0.069	4E-7	(EA, initial)	0.51	[0.31-0.71] unit decrease	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
1626	chr9	136522273	136522274	rs6271	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Systolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	9q34.2	DBH	rs6271-T	0.072	5E-11		0.5911	[0.41-0.77] mm Hg decrease	Affymetrix, Illumina, Perlegen [128272]	N
1626	chr9	136522273	136522274	rs6271	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Diastolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	9q34.2	DBH	rs6271-T	0.072	2E-18		0.4646	[0.36-0.57] mm Hg decrease	Affymetrix, Illumina, Perlegen [128272]	N
1627	chr9	136586953	136586954	rs2502757	27611488	Almoguera B	2016-09-09	Am J Respir Crit Care Med	Identification of Four Novel Loci in Asthma in European American and African American Populations.	Asthma	819 African American non-allergic asthma cases, 2,218 African American allergic asthma cases 4,360 African American controls, 808 European American non-allergic asthma cases, 1,464 European American allergic asthma cases, 11,975 European American controls	NA	9q34.2	SARDH	rs2502757-?		5E-6	(EA)	0.164	[0.093-0.235] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1627	chr9	136600097	136600098	rs187979858	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	9q34.2	SARDH	rs187979858-A	0.998	4E-6	(AA)	0.2	unit increase	Illumina [NR] (imputed)	N
1627	chr9	136601768	136601769	rs111389997	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	9q34.2	SARDH	rs111389997-C	0.863039	6E-22	(sarcosine)	0.309	[0.25-0.37] unit increase	Illumina [13039987] (imputed)	N
1627	chr9	136606034	136606035	rs186821245	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	9q34.2	Intergenic	rs186821245-C	0.997	3E-6	(AA)	0.204	unit increase	Illumina [NR] (imputed)	N
1627	chr9	136613622	136613623	rs78280308	31296530	Trendowski MR	2019-07-11	Clin Cancer Res	Clinical and Genome-Wide Analysis of Serum Platinum Levels after Cisplatin-Based Chemotherapy.	Serum platinum levels after completion of cisplatin chemotherapy	866 European ancestry individuals, 17 non-European ancestry individuals, 127 individuals	NR	9q34.2	NR	rs78280308-A	0.0325	8E-6		0.3793	[0.21-0.54] unit increase	Illumina [7305641] (imputed)	N
1627	chr9	136618127	136618128	rs142965926	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	9q34.2	Intergenic	rs142965926-G	0.996	1E-6	(AA)	0.189	unit increase	Illumina [NR] (imputed)	N
1627	chr9	136653435	136653436	rs56019925	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	9q34.2	VAV2	rs56019925-T	0.0152309776802612	4E-6	(F_Peptostreptococcaceae_HB)	1.09309	[0.63-1.56] unit decrease	Illumina [7711310] (imputed)	N
1627	chr9	136676013	136676014	rs7021663	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	9q34.2	NR	rs7021663-C	0.209934371046771	3E-6	(IGP63)	0.1807	[0.1-0.26] unit decrease	Illumina [~ 2500000] (imputed)	N
1627	chr9	136679079	136679080	rs756777	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	9q34.2	NR	rs756777-G	0.208834557187361	1E-6	(IGP67)	0.1868	[0.11-0.26] unit increase	Illumina [~ 2500000] (imputed)	N
1627	chr9	136692118	136692119	rs115861550	34993496	Jiang Y	2021-11-19	HGG Adv	Genetic Factors Associated with Prostate Cancer Conversion from Active Surveillance to Treatment.	Conversion from active surveillance to active treatment in prostate cancer	1,609 European ancestry cases, 3,613 European ancestry controls	77 European ancestry cases, 348 European ancestry controls, 123 African ancestry cases, 273 African ancestry controls, 88 Asian ancestry cases, 149 Asian ancestry controls, 21 Latin American cases, 60 Latin American controls	9q34.2		rs115861550-T	0.01	4E-6		2.05	[1.51-2.79]	Illumina [9962324] (imputed)	N
1627	chr9	136707729	136707730	rs10993820	30306274	Shah RL	2018-10-10	Hum Genet	Genome-wide association studies for corneal and refractive astigmatism in UK Biobank demonstrate a shared role for myopia susceptibility loci.	Corneal astigmatism	Up to 86,335 European ancestry individuals		9q34.2	VAV2	rs10993820-A	0.791	4E-7		0.018	[0.012-0.024] dioptres decrease	NR [5901671] (imputed)	N
1628	chr9	136723519	136723520	rs12344583	21810271	Antoni G	2011-08-02	BMC Med Genet	Combined analysis of three genome-wide association studies on vWF and FVIII plasma levels.	vWF and FVIII levels	1,624 European ancestry individuals	NA	9q34.2	VAV2	rs12344583-G	0.20	8E-6	(FVIII activity)	0.2	[0.12-0.28] IU/dL increase	Illumina [442728]	N
1628	chr9	136799914	136799915	rs2789845	31219150	Ekenberg C	2019-06-13	J Infect Dis	Single nucleotide polymorphisms in HLA alleles are associated with HIV-1 viral load in demographically diverse, ART-naive participants from the START trial.	Pre-treatment viral load in HIV-1 infection	1,398 European ancestry individuals, 572 Black individuals, 418 Hispanic individuals, 13 Asian ancestry individuals, 39 individuals	NA	9q34.2	VAV2	rs2789845-C	0.805	9E-16		0.24	[0.18-0.29] unit increase	Affymetrix [339439]	N
1628	chr9	136825332	136825333	rs2519796	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	9q34.2	VAV2	rs2519796-A		7E-8		0.01	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
1628	chr9	136825332	136825333	rs2519796	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	9q34.2	VAV2	rs2519796-A	0.6667	4E-10		0.02388475	[0.016-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1628	chr9	136825332	136825333	rs2519796	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	9q34.2	VAV2	rs2519796-A	0.6667	2E-10		0.02408438	[0.017-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1628	chr9	136826456	136826457	rs2073829	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	9q34.2	VAV2	rs2073829-A	0.666305	1E-9		0.014417012	[0.0098-0.0191] unit decrease	Affymetrix [93095623] (imputed)	N
1628	chr9	136835342	136835343	rs3780792	20598377	Nischwitz S	2010-06-30	J Neuroimmunol	Evidence for VAV2 and ZNF433 as susceptibility genes for multiple sclerosis.	Multiple sclerosis	590 European ancestry cases, 825 European ancestry controls	NA	9q34.2	VAV2	rs3780792-G	NR	1E-6		1.6	[1.32-1.92]	Illumina [~ 300000]	N
1629	chr9	136882820	136882821	rs6479631	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	9q34.2	NR	rs6479631-T	0.718422	3E-16		0.017748	[0.013-0.022] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1629	chr9	136884184	136884185	rs140126992	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	9q34.2	NR	rs140126992-T	0.729193	1E-13		0.018674128	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1629	chr9	136884737	136884738	rs3094339	29760442	Iglesias AI	2018-05-14	Nat Commun	Cross-ancestry genome-wide association analysis of corneal thickness strengthens link between complex and Mendelian eye diseases.	Central corneal thickness	17,803 European ancestry individuals	NA	9q34.2	VAV2, BRD3	rs3094339-A	0.72	5E-11		2.804	[1.97-3.64] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1629	chr9	136884753	136884754	rs2428087	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	9q34.2		rs2428087-T	0.433725	1E-8		0.0197304	[0.013-0.027] unit decrease	Illumina [13478928] (imputed)	N
1629	chr9	136885978	136885979	rs448918	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	9q34.2	NR	rs448918-G	0.7126	1E-9		0.0327	[0.022-0.043] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
1629	chr9	136889986	136889987	rs109536	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals	9q34.2		rs109536-G	0.726834	2E-27		0.105964	[0.086-0.126] decrease	Affymetrix [11014269] (imputed)	N
1629	chr9	136889986	136889987	rs109536	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	9q34.2	LINC00094	rs109536-C	0.272991	1E-15		0.0202394	[0.015-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1629	chr9	136889986	136889987	rs109536	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q34.2	NR	rs109536-C	0.337818	1E-16				Affymetrix, Illumina [24649327] (imputed)	N
1629	chr9	136890106	136890107	rs7470605	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	9q34.2	LINC00094	rs7470605-G	0.350015	3E-9		0.01479682	[0.0099-0.0197] unit decrease	Affymetrix [93095623] (imputed)	N
1629	chr9	136890703	136890704	rs379417	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	9q34.2	NR	rs379417-G	0.6491	5E-11		0.0278	[0.02-0.036] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1629	chr9	136893866	136893867	rs410876	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q34.2	NR	rs410876-A	0.30581	5E-22				Affymetrix, Illumina [23114412] (imputed)	N
1629	chr9	136893866	136893867	rs410876	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	9q34.2	NR	rs410876-A	0.267188	5E-24		0.022891	[0.018-0.027] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
1629	chr9	136895409	136895409	rs371929806	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	9q34.2	LINC00094	rs371929806-CA	0.226525	4E-10		0.017496465	[0.012-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1629	chr9	136895817	136895818	rs72766607	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	9q34.2	NR	rs72766607-G	NR	1E-13		0.0664	[0.049-0.084] unit decrease	Affymetrix [9000000] (imputed)	N
1629	chr9	136895817	136895818	rs72766607	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	9q34.2	NR	rs72766607-T	0.979535	5E-32		0.0339196	[0.028-0.04] unit increase	Affymetrix [16582909] (imputed)	N
1629	chr9	136895817	136895818	rs72766607	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	9q34.2	NR	rs72766607-T	0.979638	3E-15		0.0315271	[0.023-0.04] unit increase	Affymetrix [16585854] (imputed)	N
1629	chr9	136895817	136895818	rs72766607	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	9q34.2	NR	rs72766607-T	0.979535	1E-21		0.0317745	[0.025-0.038] unit increase	Affymetrix [16582965] (imputed)	N
1629	chr9	136895817	136895818	rs72766607	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	9q34.2	NR	rs72766607-T	0.979638	2E-8		0.0268862	[0.017-0.037] unit increase	Affymetrix [16585866] (imputed)	N
1629	chr9	136897977	136897978	rs3180509	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	9q34.2	BRD3	rs3180509-T	0.2559	5E-9		0.02445947	[0.016-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
1629	chr9	136897990	136897991	rs57529360	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	9q34.2	BRD3	rs57529360-C	0.26723	3E-19		0.022394583	[0.017-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1629	chr9	136898626	136898627	rs433402	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q34.2	NR	rs433402-G	0.308952	2E-19				Affymetrix, Illumina [19872809] (imputed)	N
1629	chr9	136902829	136902829	rs532553681	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	9q34.2	BRD3	rs532553681-AT	0.6085	9E-10		0.02532776	[0.017-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
1629	chr9	136902829	136902829	rs532553681	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	9q34.2	BRD3	rs532553681-AT	0.6085	3E-14		0.03129194	[0.023-0.039] unit increase	Affymetrix [~ 2500000] (imputed)	N
1629	chr9	136902829	136902829	rs532553681	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	9q34.2	BRD3	rs532553681-AT	0.6085	4E-10		0.0257505	[0.018-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
1629	chr9	136905473	136905474	rs467379	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Aspartate aminotransferase levels	386,570 British ancestry individuals, 10,617 Asian or Asian British individuals, 7,426 Black or Black British individuals, 2,321 Chinese ancestry individuals	NA	9q34.2	BRD3	rs467379-?	NR	4E-11		0.0018	[0.0012-0.0024] unit increase	Affymetrix [21347608] (imputed)	N
1629	chr9	136905473	136905474	rs467379	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Alanine aminotransferase levels	387,859 British ancestry individuals, 10,635 Asian or Asian British individuals, 7,468 Black or Black British individuals, 2,338 Chinese ancestry individuals	NA	9q34.2	BRD3	rs467379-?	NR	4E-8		0.0025	[0.0015-0.0035] unit increase	Affymetrix [21347608] (imputed)	N
1629	chr9	136905473	136905474	rs467379	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	9q34.2	BRD3	rs467379-T	0.290925	8E-15		0.019022092	[0.014-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1629	chr9	136905764	136905765	rs467369	33345186	Li S	2020-10-28	Brain Commun	The genetics of circulating BDNF: towards understanding the role of BDNF in brain structure and function in middle and old ages.	Brain-derived neurotrophic factor levels	11,785 European ancestry individuals	NA	9q34.2	BRD3	rs467369-T	0.5478	3E-11		6.67	NR z score decrease	Affymetrix, Illumina [9950208] (imputed)	N
1629	chr9	136905764	136905765	rs467369	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	9q34.2	BRD3	rs467369-T	0.531675	7E-16		0.018178998	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1629	chr9	136907818	136907832	rs140578741	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	9q34.2	BRD3	rs140578741-C	0.2607	4E-9		0.02406677	[0.016-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
1629	chr9	136907818	136907832	rs140578741	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	9q34.2	BRD3	rs140578741-C	0.2608	2E-9		0.0246063	[0.017-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
1629	chr9	136909007	136909008	rs392134	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	9q34.2	BRD3	rs392134-A	0.2618	1E-16		0.03358099	[0.026-0.042] unit increase	Affymetrix [~ 2500000] (imputed)	N
1629	chr9	136909007	136909008	rs392134	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	9q34.2	BRD3	rs392134-A	0.2618	9E-16		0.03266084	[0.025-0.041] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1629	chr9	136909140	136909141	rs455073	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Central corneal thickness	16,204 European ancestry individuals	NA	9q34.2	BRD3	rs455073-C	0.277	3E-11		2.901	[2.04-3.76] ?m increase	Affymetrix, Illumina [9249813] (imputed)	N
1629	chr9	136911145	136911146	rs456205	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	9q34.2	BRD3	rs456205-A	0.2607	2E-10		0.02581637	[0.018-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
1629	chr9	136912625	136912626	rs459571	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	9q34.2	BRD3	rs459571-T	0.2582	4E-13		0.02986666	[0.022-0.038] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1629	chr9	136913122	136913123	rs460888	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	9q34.2	BRD3	rs460888-G	0.263191	3E-27		0.02714981	[0.022-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
1629	chr9	136918138	136918139	rs2520099	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Alcohol consumption (drinks per week)	414,343 European ancestry individuals	NA	9q34.2	BRD3	rs2520099-T	0.7306	1E-8		0.01438478	[0.0095-0.0193] unit decrease	Affymetrix [11514936] (imputed)	N
1629	chr9	136919415	136919416	rs2520096	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	9q34.2	RP11-374P20.4	rs2520096-G	0.269496	5E-28		0.027755214	[0.023-0.033] unit increase	Affymetrix [93095623] (imputed)	N
1629	chr9	136919415	136919416	rs2520096	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	9q34.2	RP11-374P20.4	rs2520096-G	0.269492	5E-24		0.025577899	[0.021-0.031] unit increase	Affymetrix [93095623] (imputed)	N
1629	chr9	136919415	136919416	rs2520096	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	9q34.2	BRD3	rs2520096-A	0.729808	7E-12		0.0147445	[0.011-0.019] unit decrease	Affymetrix [NR] (imputed)	N
1629	chr9	136919415	136919416	rs2520096	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	9q34.2	BRD3	rs2520096-A	0.729871	2E-10		0.014065	[0.0097-0.0184] unit decrease	Affymetrix [NR] (imputed)	N
1629	chr9	136921463	136921464	rs2157770	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	9q34.2		rs2157770-A	0.713	1E-17				Affymetrix [10369434] (imputed)	N
1629	chr9	136921463	136921464	rs2157770	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	9q34.2	RP11-374P20.4, BRD3	rs2157770-G	0.28683	1E-12		0.019140165	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1629	chr9	136921463	136921464	rs2157770	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	9q34.2	RP11-374P20.4, BRD3	rs2157770-G	0.287756	4E-39		0.032289367	[0.027-0.037] unit increase	Affymetrix [93095623] (imputed)	N
1629	chr9	136921463	136921464	rs2157770	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	9q34.2	RP11-374P20.4, BRD3	rs2157770-G	0.287731	2E-22		0.026635462	[0.021-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
1629	chr9	136921463	136921464	rs2157770	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	9q34.2		rs2157770-?	NR	2E-31				NR [~ 8900000] (imputed)	N
1629	chr9	136921463	136921464	rs2157770	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	9q34.2	BRD3	rs2157770-G	NR	1E-13		0.0321037	[0.023-0.041] unit decrease	Affymetrix [16832071] (imputed)	N
1629	chr9	136921463	136921464	rs2157770	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	9q34.2	BRD3, RP11-374P20.4	rs2157770-G	0.286	2E-28		0.04436646	[0.037-0.052] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1629	chr9	136922699	136922700	rs2810489	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	9q34.2		rs2810489-A	NR	8E-17		0.0153	[0.012-0.019] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
1629	chr9	136922699	136922700	rs2810489	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	9q34.2	RP11-374P20.4	rs2810489-A	0.257914	1E-16		0.020841885	[0.016-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1629	chr9	136922699	136922700	rs2810489	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	9q34.2	Intergenic	rs2810489-A	0.2602	2E-8	(MTAG)	0.0146	[0.0095-0.0197] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1629	chr9	136923330	136923331	rs2810491	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	9q34.2	RP11-374P20.4	rs2810491-C	0.257	2E-21		0.03988658	[0.032-0.048] unit increase	Affymetrix [~ 2500000] (imputed)	N
1629	chr9	136924743	136924744	rs4744546	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	9q34.2	NR	rs4744546-?	NR	4E-7	(male)	0.13299	[0.081-0.185] unit decrease	Affymetrix [7794483] (imputed)	N
1629	chr9	136924743	136924744	rs4744546	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	9q34.2	NR	rs4744546-?	NR	1E-8		0.12188	[0.08-0.164] unit decrease	Affymetrix [7794483] (imputed)	N
1629	chr9	136925662	136925663	rs11789898	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	9q34.2		rs11789898-?	NR	3E-11				NR [~ 8900000] (imputed)	N
1629	chr9	136925662	136925663	rs11789898	22139419	Gieger C	2011-11-30	Nature	New gene functions in megakaryopoiesis and platelet formation.	Platelet count	38,891 European ancestry individuals, 1,661 Val Borbera (founder/genetic isolate) individuals, 521 Carlantino (founder/genetic isolate) individuals, 1,198 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,213 South Tyrolean (founder/genetic isolate) individuals, 890 Sorbian (founder/genetic isolate) individuals, 4,292 Sardinian (founder/genetic isolate) individuals	Up to 16,949 European ancestry individuals, 854 Cliento (founder/genetic isolate) individuals, 1,035 Talana (founder/genetic isolate) individuals	9q34.2	BRD3	rs11789898-T	NR	2E-10		3.014	[2.08-3.95] 10^9/l increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1629	chr9	136926790	136926791	rs72766630	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	9q34.2		rs72766630-?	NR	5E-36				NR [~ 8900000] (imputed)	N
1629	chr9	136926790	136926791	rs72766630	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	9q34.2		rs72766630-?	NR	3E-23				NR [~ 8900000] (imputed)	N
1629	chr9	136926790	136926791	rs72766630	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	9q34.2	BRD3	rs72766630-G	0.8329	1E-15		0.15	[0.11-0.19] unit decrease	Affymetrix [~ 11900000] (imputed)	N
1629	chr9	136927875	136927876	rs7027509	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	9q34.2	Intergenic	rs7027509-T	0.356	1E-14	(MTAG)	0.0133	[0.01-0.0166] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1629	chr9	136929585	136929586	rs55924785	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q34.2	NR	rs55924785-T	0.142466	1E-34				Affymetrix, Illumina [20825802] (imputed)	N
1629	chr9	136929585	136929586	rs55924785	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	9q34.2	Intergenic	rs55924785-C	0.8183	1E-13		0.0188	[0.014-0.024] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1629	chr9	136930133	136930134	rs11795079	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	9q34.2	BRD3	rs11795079-T	0.8332	4E-16		0.153	[0.12-0.19] unit decrease	Affymetrix [~ 11900000] (imputed)	N
1629	chr9	136931777	136931778	rs72766638	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	9q34.2		rs72766638-C	0.836	6E-19		0.13	[-0.16--0.1] % decrease	Affymetrix [NR] (imputed)	N
1629	chr9	136931777	136931778	rs72766638	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9q34.2		rs72766638-?	NR	2E-21				NR [~ 8900000] (imputed)	N
1629	chr9	136931777	136931778	rs72766638	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	9q34.2	Intergenic	rs72766638-A	0.1802	1E-15	(MTAG)	0.0186	[0.014-0.023] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1629	chr9	136931777	136931778	rs72766638	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	9q34.2	BRD3	rs72766638-C	NR	4E-7		0.0345953	[0.021-0.048] unit increase	Illumina [13520550] (imputed)	N
1629	chr9	136931956	136931957	rs2427964	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	9q34.2	BRD3	rs2427964-C	0.302176	1E-9		0.01457872	[0.0099-0.0193] unit increase	Affymetrix [93095623] (imputed)	N
1629	chr9	136931956	136931957	rs2427964	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	9q34.2	NR	rs2427964-C	0.306027	6E-11		0.013728	[0.0096-0.0178] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1629	chr9	136932165	136932166	rs10993909	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	9q34.2	BRD3	rs10993909-?	NR	3E-8		0.01164415	[0.0075-0.0158] unit increase	NR [7306098]	N
1629	chr9	136932705	136932706	rs13287061	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	9q34.2	BRD3	rs13287061-T	0.330312	1E-41		0.035508174	[0.03-0.041] unit decrease	Affymetrix [93095623] (imputed)	N
1629	chr9	136932705	136932706	rs13287061	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	9q34.2	BRD3	rs13287061-T	0.3249	4E-7		0.0021	[0.0013-0.0029] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
1629	chr9	136933444	136933445	rs75318400	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	9q34.2	Intergenic	rs75318400-T	0.6462	6E-12		0.0163	[0.012-0.021] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1629	chr9	136934202	136934203	rs146671954	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	9q34.2	BRD3	rs146671954-A	0.1637	9E-15		0.03699452	[0.028-0.046] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1629	chr9	136940549	136940550	rs141147400	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	9q34.2	ARF4P1	rs141147400-C	0.2921	1E-15		0.0172	[0.013-0.022] unit increase	Affymetrix [18391927] (imputed)	N
1629	chr9	136941294	136941295	rs12377089	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	9q34.2		rs12377089-A	0.673	2E-18				Affymetrix [10369434] (imputed)	N
1629	chr9	136942135	136942136	rs10821556	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	9q34.2	RP11-349K21.1	rs10821556-A	0.326799	3E-12		0.01820541	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1629	chr9	136942135	136942136	rs10821556	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	9q34.2	RP11-349K21.1	rs10821556-A	0.3291	2E-39		0.05072114	[0.043-0.058] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1629	chr9	136942422	136942423	rs9657703	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CXCL5	5,366 Icelandic ancestry individuals	NA	9q34.2		rs9657703-A	0.3213	2E-16		0.161901	[0.12-0.2] unit decrease	Illumina [7506463] (imputed)	N
1629	chr9	136949557	136949558	rs2905064	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	9q34.2		rs2905064-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1629	chr9	136949668	136949669	rs55931012	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	9q34.2		rs55931012-T	0.19	4E-10		6.27	z score increase	Affymetrix [9061022] (imputed)	N
1629	chr9	136949668	136949669	rs55931012	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	9q34.2		rs55931012-T	0.163969	1E-9		0.018399866	[0.012-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1629	chr9	136949668	136949669	rs55931012	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	9q34.2		rs55931012-T	0.164073	2E-9		0.018340897	[0.012-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1629	chr9	136949668	136949669	rs55931012	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	9q34.2		rs55931012-T	0.164004	3E-27		0.0318743	[0.026-0.037] unit increase	Affymetrix [93095623] (imputed)	N
1629	chr9	136949668	136949669	rs55931012	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	9q34.2		rs55931012-T	0.164013	1E-28		0.033139925	[0.027-0.039] unit increase	Affymetrix [93095623] (imputed)	N
1629	chr9	136949668	136949669	rs55931012	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	9q34.2	NR	rs55931012-T	0.164793	4E-37		0.033177	[0.028-0.038] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
1629	chr9	136950919	136950921	rs35259020	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	9q34.2		rs35259020-T	0.163615	9E-19		0.028235381	[0.022-0.034] unit increase	Affymetrix [93095623] (imputed)	N
1629	chr9	136950919	136950921	rs35259020	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	9q34.2		rs35259020-T	0.163612	5E-26		0.03204912	[0.026-0.038] unit increase	Affymetrix [93095623] (imputed)	N
1629	chr9	136950919	136950921	rs35259020	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	9q34.2	intergenic	rs35259020-T	0.1638	5E-12		0.03368401	[0.024-0.043] unit increase	Affymetrix [~ 2500000] (imputed)	N
1629	chr9	136950919	136950921	rs35259020	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	9q34.2	intergenic	rs35259020-T	0.1638	1E-9		0.02950529	[0.02-0.039] unit increase	Affymetrix [~ 2500000] (imputed)	N
1629	chr9	136950919	136950921	rs35259020	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	9q34.2	intergenic	rs35259020-T	0.1638	3E-16		0.03922942	[0.03-0.049] unit increase	Affymetrix [~ 2500000] (imputed)	N
1629	chr9	136950919	136950921	rs35259020	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	9q34.2	intergenic	rs35259020-T	0.1637	2E-15		0.0383378	[0.029-0.048] unit increase	Affymetrix [~ 2500000] (imputed)	N
1629	chr9	136950919	136950921	rs35259020	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	9q34.2	intergenic	rs35259020-T	0.1638	5E-12		0.03363898	[0.024-0.043] unit increase	Affymetrix [~ 2500000] (imputed)	N
1629	chr9	136950919	136950921	rs35259020	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	9q34.2	intergenic	rs35259020-T	0.1638	1E-10		0.03132414	[0.022-0.041] unit increase	Affymetrix [~ 2500000] (imputed)	N
1630	chr9	136984231	136984232	rs4744531	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 5, width of mouth relative to central midface)	2,187 European ancestry individuals	NA	9q34.2	NR	rs4744531-A	0.1194	6E-7		0.2327	[0.14-0.32] unit increase	Illumina [10677593] (imputed)	N
1630	chr9	136994892	136994893	rs28647893	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	9q34.2	LL09NC01-251B2.3	rs28647893-T	NR	3E-9		0.0173641	[0.012-0.023] unit increase	Affymetrix [321788] (imputed)	N
1630	chr9	137005625	137005626	rs138634755	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium HDL	115,082 European ancestry individuals	NA	9q34.2		rs138634755-G	0.973681	3E-8		0.0711795	[0.046-0.096] unit increase	NR [11722792] (imputed)	N
1630	chr9	137005625	137005626	rs138634755	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in HDL	115,082 European ancestry individuals	NA	9q34.2		rs138634755-G	0.973681	2E-8		0.0715084	[0.046-0.097] unit increase	NR [11722792] (imputed)	N
1630	chr9	137008949	137008950	rs28603051	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Cerebrospinal fluid t-tau levels in normal cognition	305 European ancestry cognitively normal individuals	NA	9q34.2	WDR5, BRD3, ARF4P1, RNU6ATAC	rs28603051-A	0.46	6E-7		0.49	[0.29-0.69] unit increase	Illumina [8248960] (imputed)	N
1630	chr9	137023978	137023979	rs11556391	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	9q34.2		rs11556391-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1630	chr9	137094358	137094359	rs11185677	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	9q34.2	RNU6ATAC	rs11185677-G	0.846502	4E-12		0.0178373	[0.013-0.023] unit increase	NR [13737936] (imputed)	N
1630	chr9	137094358	137094359	rs11185677	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	9q34.2		rs11185677-?	NR	5E-10				NR [~ 8900000] (imputed)	N
1630	chr9	137094358	137094359	rs11185677	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	9q34.2		rs11185677-?	NR	1E-12		0.020479	[0.015-0.026] unit increase	Affymetrix [20259828] (imputed)	N
1631	chr9	137106878	137106879	rs11791747	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	9q34.2	NR	rs11791747-G	0.30696900000000005	7E-15		0.00669344	[0.0049-0.0085] unit increase	Affymetrix [16582909] (imputed)	N
1631	chr9	137106878	137106879	rs11791747	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	9q34.2	NR	rs11791747-G	0.306547	2E-13		0.00989946	[0.0073-0.0125] unit increase	Affymetrix [16585854] (imputed)	N
1631	chr9	137106878	137106879	rs11791747	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	9q34.2	NR	rs11791747-G	0.30696900000000005	1E-13		0.00728518	[0.0053-0.0093] unit increase	Affymetrix [16582965] (imputed)	N
1631	chr9	137106878	137106879	rs11791747	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	9q34.2	NR	rs11791747-G	0.306547	8E-12		0.0106264	[0.0076-0.0137] unit increase	Affymetrix [16585866] (imputed)	N
1631	chr9	137110906	137110907	rs13302475	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	9q34.2	NR	rs13302475-A	NR	4E-10		0.0196	[0.014-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
1631	chr9	137117193	137117194	rs4994332	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	9q34.2	NR	rs4994332-T	NR	2E-9		0.0154	[0.01-0.02] unit decrease	Affymetrix [9000000] (imputed)	N
1631	chr9	137117495	137117496	rs7028191	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	9q34.2	NR	rs7028191-T	0.442036	2E-39		0.029866686	[0.025-0.034] unit increase	Affymetrix [93095623] (imputed)	N
1631	chr9	137117495	137117496	rs7028191	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	9q34.2	NR	rs7028191-T	0.442029	4E-34		0.027667366	[0.023-0.032] unit increase	Affymetrix [93095623] (imputed)	N
1631	chr9	137117495	137117496	rs7028191	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	9q34.2		rs7028191-T	0.442138	1E-14		0.017344534	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1631	chr9	137117495	137117496	rs7028191	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	9q34.2		rs7028191-T	0.442041	1E-51		0.034371924	[0.03-0.039] unit increase	Affymetrix [93095623] (imputed)	N
1631	chr9	137117495	137117496	rs7028191	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	9q34.2		rs7028191-T	0.442033	9E-56		0.03558283	[0.031-0.04] unit increase	Affymetrix [93095623] (imputed)	N
1631	chr9	137117495	137117496	rs7028191	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	9q34.2		rs7028191-T	0.442045	3E-51		0.03409053	[0.03-0.039] unit increase	Affymetrix [93095623] (imputed)	N
1631	chr9	137117495	137117496	rs7028191	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	9q34.2		rs7028191-?	NR	1E-16				NR [~ 8900000] (imputed)	N
1631	chr9	137118169	137118170	rs1475718	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	9q34.2	NR	rs1475718-A	NR	1E-9		0.0155	[0.011-0.02] unit decrease	Affymetrix [9000000] (imputed)	N
1631	chr9	137118169	137118170	rs1475718	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	9q34.2	intergenic	rs1475718-A	0.4444	2E-11		0.02464611	[0.017-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
1631	chr9	137118169	137118170	rs1475718	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	9q34.2	intergenic	rs1475718-A	0.4444	2E-9		0.02197765	[0.015-0.029] unit increase	Affymetrix [~ 2500000] (imputed)	N
1631	chr9	137118169	137118170	rs1475718	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	9q34.2	intergenic	rs1475718-A	0.4444	1E-20		0.03369588	[0.027-0.041] unit increase	Affymetrix [~ 2500000] (imputed)	N
1631	chr9	137118169	137118170	rs1475718	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	9q34.2	intergenic	rs1475718-A	0.4444	1E-19		0.0332296	[0.026-0.04] unit increase	Affymetrix [~ 2500000] (imputed)	N
1631	chr9	137118169	137118170	rs1475718	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	9q34.2	intergenic	rs1475718-A	0.4444	7E-18		0.03149688	[0.024-0.039] unit increase	Affymetrix [~ 2500000] (imputed)	N
1631	chr9	137122766	137122767	rs10785876	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	9q34.2		rs10785876-G	0.556841	3E-15		0.017880421	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1631	chr9	137125500	137125501	rs10785877	23648065	Low SK	2013-05-04	Cancer Sci	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (paclitaxel + carboplatin)	150 Japanese ancestry cases, 166 Japanese ancestry controls	NA	9q34.2	RXRA	rs10785877-T	0.66	7E-7	(Allelic model)	2.58	[1.766-3.769]	Illumina [733202]	N
1631	chr9	137159414	137159415	rs775737239	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	9q34.2	NR	rs775737239-G	0.586406	6E-10		0.00503935	[0.0034-0.0067] unit increase	Affymetrix [16582909] (imputed)	N
1631	chr9	137159414	137159415	rs775737239	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	9q34.2	NR	rs775737239-G	0.586406	5E-10		0.00547726	[0.0036-0.0074] unit increase	Affymetrix [16582965] (imputed)	N
1631	chr9	137159426	137159427	rs80126506	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	9q34.2	NR	rs80126506-A	0.5922689999999999	2E-10		0.00748515	[0.005-0.01] unit increase	Affymetrix [16585854] (imputed)	N
1631	chr9	137159426	137159427	rs80126506	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	9q34.2	NR	rs80126506-A	0.5922689999999999	2E-9		0.00801636	[0.0052-0.0109] unit increase	Affymetrix [16585866] (imputed)	N
1631	chr9	137171765	137171766	rs67383251	25628645	Tong Y	2015-01-13	Front Genet	Identification of genetic variants or genes that are associated with Homoharringtonine (HHT) response through a genome-wide association study in human lymphoblastoid cell lines (LCLs).	Response to Homoharringtonine (cytotoxicity)	93 African American ancestry lymphoblastoid cell lines, 91 European ancestry lymphoblastoid cell lines, 94 Han Chinese ancestry lymphoblastoid cell lines	NA	9q34.2	intergenic	rs67383251-?		6E-6				Affymetrix, Illumina [6750581] (imputed)	N
1631	chr9	137177275	137177276	rs72619340	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	9q34.2	RP11-145E17.2	rs72619340-A	NR	2E-9		0.0252295	[0.017-0.033] unit increase	Affymetrix [321788] (imputed)	N
1631	chr9	137204230	137204231	rs139927411	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	9q34.2		rs139927411-T	0.0048417	8E-6		0.21643	[0.12-0.31] unit increase	Affymetrix [15580782] (imputed)	N
1631	chr9	137204968	137204968	rs34771269	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	9q34.2	NR	rs34771269-CT	0.29491999999999996	2E-21		0.0117126	[0.0092-0.0142] unit increase	Affymetrix [16582621] (imputed)	N
1631	chr9	137204968	137204968	rs34771269	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	9q34.2	NR	rs34771269-CT	0.29491999999999996	7E-19		0.0116773	[0.009-0.0144] unit increase	Affymetrix [16582614] (imputed)	N
1631	chr9	137205221	137205222	rs10881574	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex interaction	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	9q34.2	RXRA	rs10881574-C	0.07	2E-6				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1631	chr9	137210048	137210049	rs59306092	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	9q34.2	NR	rs59306092-C	0.306621	4E-8		0.0552544	[0.034-0.076] unit decrease	Affymetrix [21375087] (imputed)	N
1632	chr9	137240359	137240361	rs35955778	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	9q34.2		rs35955778-T	NR	1E-8		0.0104	[0.0069-0.0139] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
1632	chr9	137259991	137259992	rs11185660	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	9q34.2		rs11185660-C	NR	4E-16		0.0188	[0.014-0.023] unit decrease	Affymetrix, Illumina [20535842] (imputed)	N
1632	chr9	137267782	137267783	rs28970773	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	9q34.2		rs28970773-G	NR	3E-8		0.0124	[0.0081-0.0167] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
1632	chr9	137268176	137268177	rs35233014	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	9q34.2	NR	rs35233014-C	0.25442	3E-46		0.0137386	[0.012-0.016] unit increase	Affymetrix [16582909] (imputed)	N
1632	chr9	137268176	137268177	rs35233014	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	9q34.2	NR	rs35233014-C	0.254515	4E-27		0.0152657	[0.012-0.018] unit increase	Affymetrix [16585854] (imputed)	N
1632	chr9	137268176	137268177	rs35233014	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	9q34.2	NR	rs35233014-C	0.25442	5E-37		0.0138864	[0.012-0.016] unit increase	Affymetrix [16582965] (imputed)	N
1632	chr9	137268176	137268177	rs35233014	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	9q34.2	NR	rs35233014-C	0.254515	4E-18		0.0143397	[0.011-0.018] unit increase	Affymetrix [16585866] (imputed)	N
1632	chr9	137268681	137268682	rs35182096	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	9q34.2	NR	rs35182096-C	0.255957	4E-8		0.00810483	[0.0052-0.011] unit increase	Affymetrix [16578495] (imputed)	N
1632	chr9	137268681	137268682	rs35182096	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	9q34.2	NR	rs35182096-C	0.255606	1E-10		0.023075	[0.016-0.03] unit increase	Affymetrix [16577313] (imputed)	N
1632	chr9	137272244	137272245	rs62573099	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9q34.2		rs62573099-?	NR	7E-9				NR [~ 8900000] (imputed)	N
1632	chr9	137315983	137315984	rs552101601	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	9q34.2	NR	rs552101601-?	NR	2E-6		0.0077538	[0.0046-0.011] unit increase	Affymetrix [805426] (imputed)	N
1632	chr9	137328465	137328466	rs61751480	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9q34.2	NR	rs61751480-T	0.01394	1E-8	(PLS3)	0.2529	NR unit increase	Illumina [1671387] (imputed)	N
1633	chr9	137370738	137370739	rs12003807	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 2, vertical position of orbits relative to midface)	2,187 European ancestry individuals	NA	9q34.2	NR	rs12003807-C	0.01513	2E-6		0.5843	[0.34-0.82] unit increase	Illumina [10677593] (imputed)	N
1633	chr9	137397210	137397211	rs7859114	33232274	Mohammadnejad A	2020-11-24	Aging (Albany NY)	Generalized correlation coefficient for genome-wide association analysis of cognitive ability in twins.	Cognitive function (generalized correlation coefficient)	900 Danish ancestry dizygotic twins, 272 Danish ancestry monozygotic twins	NA	9q34.3	NR	rs7859114-?	NR	3E-7			[NR]	Illumina [5779266] (imputed)	N
1633	chr9	137408431	137408432	rs943427	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	9q34.3	COL5A1	rs943427-?	NR	8E-6	(tyrosine)	0.5525904	[0.31-0.8] unit increase	Affymetrix [at least 2500000] (imputed)	N
1633	chr9	137424041	137424042	rs4841895	24954895	Simino J	2014-06-19	Am J Hum Genet	Gene-age interactions in blood pressure regulation: a large-scale investigation with the CHARGE, Global BPgen, and ICBP Consortia.	Blood pressure	55,796 European ancestry individuals	43,445 European ancestry individuals, 1,849 Chinese ancestry individuals, 2,502 Malay ancestry individuals, 2,476 Asian Indian ancestry individuals, 1,855 Asian ancestry individuals	9q34.3	COL5A1, RXRA	rs4841895-G	0.65	8E-7	(EA, MAP, Age 60-69)	0.81	[0.5-1.12] mmHg increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1633	chr9	137424411	137424412	rs4841899	29760442	Iglesias AI	2018-05-14	Nat Commun	Cross-ancestry genome-wide association analysis of corneal thickness strengthens link between complex and Mendelian eye diseases.	Central corneal thickness	17,803 European ancestry individuals	NA	9q34.3	RXRA	rs4841899-T	0.67	1E-13		2.993	[2.2-3.79] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1633	chr9	137424411	137424412	rs4841899	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Stem cell factor levels	8,290 Finnish ancestry individuals	NA	9q34.3	NR	rs4841899-C		2E-8		0.1004	[0.066-0.135] SD units increase	NR [10700000] (imputed)	N
1633	chr9	137430280	137430281	rs4074178	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Central corneal thickness	16,204 European ancestry individuals	NA	9q34.3	RXRA	rs4074178-G	0.395	1E-14		3.091	[2.31-3.88] ?m increase	Affymetrix, Illumina [9249813] (imputed)	N
1633	chr9	137432247	137432248	rs1536478	28171582	Gao X	2016-11-15	Hum Mol Genet	Genome-wide association study identifies WNT7B as a novel locus for central corneal thickness in Latinos.	Central corneal thickness	3,584 Latino individuals	931 Latino individuals	9q34.3	RXRA, COL5A1	rs1536478-G	0.47	2E-8		4.17	[NR] unit decrease	Illumina [576798] (imputed)	N
1633	chr9	137433435	137433436	rs3132309	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	35,422 individuals (>=25 years old)	NA	9q34.3		rs3132309-A	NR	2E-9		0.0142	[0.0099-0.0185] mm decrease	Affymetrix, Illumina [8936601] (imputed)	N
1633	chr9	137433435	137433436	rs3132309	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	29,580 European ancestry individuals, 14,462 Asian ancestry individuals	88,218 European ancestry individuals	9q34.3		rs3132309-A	0.41	7E-35		0.013	mm decrease	Affymetrix, Illumina [8936601] (imputed)	N
1633	chr9	137433435	137433436	rs3132309	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	29,580 European ancestry individuals	NA	9q34.3		rs3132309-A	0.42	4E-8		0.015	mm decrease	Affymetrix, Illumina [8936601] (imputed)	N
1633	chr9	137436213	137436214	rs3132307	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals	9q34.3		rs3132307-G	0.678077	2E-16		0.080804	[0.062-0.1] increase	Affymetrix [11014269] (imputed)	N
1633	chr9	137436213	137436214	rs3132307	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	9q34.3	RXRA, COL5A1	rs3132307-G	0.6788	1E-18		0.1288	[0.099-0.158] unit increase	Affymetrix [~ 11900000] (imputed)	N
1633	chr9	137436313	137436314	rs3118515	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	9q34.3	RXRA, COL5A1	rs3118515-G	0.6817	1E-17		0.1244	[0.095-0.154] unit increase	Affymetrix [~ 11900000] (imputed)	N
1633	chr9	137436313	137436314	rs3118515	28171582	Gao X	2016-11-15	Hum Mol Genet	Genome-wide association study identifies WNT7B as a novel locus for central corneal thickness in Latinos.	Central corneal thickness	3,584 Latino individuals	931 Latino individuals	9q34.3	RXRA, COL5A1, LOC100506532	rs3118515-A	0.268	9E-11		5.15	[NR] unit decrease (initial cohort)	Illumina [576798] (imputed)	N
1633	chr9	137436313	137436314	rs3118515	23493294	Gao X	2013-03-14	Invest Ophthalmol Vis Sci	A genome-wide association study of central corneal thickness in Latinos.	Central corneal thickness	1,644 Latino individuals	124 Latino individuals	9q34.3	COL5A1, RXRA, LOC100506532	rs3118515-A	0.262	8E-10		0.23	[NR] unit decrease	Illumina [6290547] (imputed)	N
1633	chr9	137437182	137437183	rs943423	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	9q34.3	RXRA, COL5A1	rs943423-?		5E-12				Affymetrix, Illumina [NR] (imputed)	N
1633	chr9	137440082	137440083	rs3118518	33649486	Hardcastle AJ	2021-03-01	Commun Biol	A multi-ethnic genome-wide association study implicates collagen matrix integrity and cell differentiation pathways in keratoconus.	Keratoconus	2,116 European ancestry cases, 24,626 European ancestry controls	1, 389 European ancestry cases, 79,727 European ancestry controls, 759 South Asian ancestry cases, 8,009 South Asian ancestry controls, 405 African ancestry cases, 4,185 African ancestry controls	9q34.3	COL5A1, RXRA	rs3118518-A	NR	2E-28		0.27	[0.22-0.32] unit increase	Affymetrix [7701190] (imputed)	N
1633	chr9	137440211	137440212	rs3132306	22814818	Hoehn R	2012-07-20	Hum Genet	Population-based meta-analysis in Caucasians confirms association with COL5A1 and ZNF469 but not COL8A2 with central corneal thickness.	Central corneal thickness	3,931 European ancestry individuals	1,418 European ancestry individuals	9q34.3	COL5A1, RXRA	rs3132306-T	0.66	3E-10		0.15	[0.11-0.19] SD increase	Affymetrix [NR] (imputed)	N
1633	chr9	137440527	137440528	rs1536482	29760442	Iglesias AI	2018-05-14	Nat Commun	Cross-ancestry genome-wide association analysis of corneal thickness strengthens link between complex and Mendelian eye diseases.	Central corneal thickness	17,803 European ancestry individuals, 8,107 Asian ancestry individuals	NA	9q34.3	COL5A1	rs1536482-G	0.66	2E-30		4.569	[3.79-5.35] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1633	chr9	137440527	137440528	rs1536482	23493294	Gao X	2013-03-14	Invest Ophthalmol Vis Sci	A genome-wide association study of central corneal thickness in Latinos.	Central corneal thickness	1,644 Latino individuals	124 Latino individuals	9q34.3	COL5A1, RXRA	rs1536482-G	0.73	6E-8		0.22	unit decrease	Illumina [6290547] (imputed)	N
1633	chr9	137440527	137440528	rs1536482	23291589	Lu Y	2013-01-06	Nat Genet	Genome-wide association analyses identify multiple loci associated with central corneal thickness and keratoconus.	Corneal structure	13,057 European ancestry individuals, 2,538 Indian ancestry individuals, 2,542 Malay ancestry individuals, 1,883 Chinese ancestry individuals	NA	9q34.3	COL5A1, RXRA	rs1536482-A	0.34	3E-22		0.12	[0.1-0.14] unit decrease	Affymetrix, Illumina [~ 1000000] (imputed)	N
1633	chr9	137441164	137441165	rs3118519	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Central corneal thickness	16,204 European ancestry individuals	NA	9q34.3	COL5A1	rs3118519-G	0.38	6E-29		4.482	[3.7-5.27] ?m decrease	Affymetrix, Illumina [9249813] (imputed)	N
1633	chr9	137441594	137441595	rs3118520	30894546	Ivarsdottir EV	2019-03-20	Nat Commun	Sequence variation at ANAPC1 accounts for 24% of the variability in corneal endothelial cell density.	Central corneal thickness	6,125 Icelandic ancestry individuals	1,459 Icelandic ancestry individuals	9q34.3	RXRA, COL5A1	rs3118520-?	NR	6E-9		0.117	[0.16-0.08] unit decrease	Illumina [NR]	N
1633	chr9	137444297	137444298	rs3132303	32528159	Choquet H	2020-06-11	Commun Biol	A multiethnic genome-wide analysis of 44,039 individuals identifies 41 new loci associated with central corneal thickness.	Central corneal thickness	32,292 European ancestry individuals, 9,623 East Asian ancestry individuals, 1,367 Hispanic/Latino individuals, 757 African American  individuals	NA	9q34.3	COL5A1	rs3132303-?	NA	2E-60		5.16	[4.55-5.77] unit increase	Affymetrix [5541230] (imputed)	N
1633	chr9	137444297	137444298	rs3132303	30894546	Ivarsdottir EV	2019-03-20	Nat Commun	Sequence variation at ANAPC1 accounts for 24% of the variability in corneal endothelial cell density.	Central corneal thickness	6,125 Icelandic ancestry individuals	1,459 Icelandic ancestry individuals	9q34.3	COL5A1	rs3132303-?	NR	3E-8		0.117	[0.08-0.16] unit increase	Illumina [NR]	N
1633	chr9	137444297	137444298	rs3132303	29760442	Iglesias AI	2018-05-14	Nat Commun	Cross-ancestry genome-wide association analysis of corneal thickness strengthens link between complex and Mendelian eye diseases.	Central corneal thickness	17,803 European ancestry individuals, 8,107 Asian ancestry individuals	NA	9q34.3	COL5A1	rs3132303-C	0.26	8E-41		5.45	[4.67-6.23] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1633	chr9	137445941	137445942	rs3132302	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs3132302-A	0.259802	4E-25		0.105767	[0.085-0.126] increase	Affymetrix [11014269] (imputed)	N
1634	chr9	137506577	137506578	rs11103429	23665963	Dubinsky MC	2013-05-09	Inflamm Bowel Dis	Multidimensional prognostic risk assessment identifies association between IL12B variation and surgery in Crohn's disease.	Crohn's disease (need for surgery)	239 European ancestry cases that required surgery within 5 year, 375 European ancestry cases that did not require surgery within 5 years	NA	9q34.3	COL5A1, RXRA	rs11103429-G	0.05	6E-6		3.6	[2.10-6.30]	Illumina [483359]	N
1634	chr9	137520376	137520377	rs10124941	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs10124941-C	0.925263	7E-13		0.11746	[0.083-0.152] increase	Affymetrix [11014269] (imputed)	N
1634	chr9	137540666	137540667	rs61045038	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Central corneal thickness	16,204 European ancestry individuals	NA	9q34.3	COL5A1	rs61045038-A	0.136	3E-16		4.73	[3.6-5.86] ?m decrease	Affymetrix, Illumina [9249813] (imputed)	N
1634	chr9	137541412	137541413	rs12554943	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	9q34.3	NR	rs12554943-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
1634	chr9	137541412	137541413	rs12554943	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	9q34.3		rs12554943-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1634	chr9	137549864	137549865	rs146717710	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Phosphatidylcholine levels	2,045 European ancestry individuals	NA	9q34.3	COL5A1	rs146717710-T	NR	3E-8	(PC(16:0;0-16:1;0))	1.0304	[0.67-1.39] unit decrease	Illumina [~ 9300000] (imputed)	N
1634	chr9	137559774	137559775	rs7032489	29760442	Iglesias AI	2018-05-14	Nat Commun	Cross-ancestry genome-wide association analysis of corneal thickness strengthens link between complex and Mendelian eye diseases.	Central corneal thickness	17,803 European ancestry individuals	NA	9q34.3	COL5A1	rs7032489-C	0.86	2E-13		4.033	[2.96-5.11] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1634	chr9	137568050	137568051	rs7044529	23291589	Lu Y	2013-01-06	Nat Genet	Genome-wide association analyses identify multiple loci associated with central corneal thickness and keratoconus.	Corneal structure	13,057 European ancestry individuals, 2,538 Indian ancestry individuals, 2,542 Malay ancestry individuals, 1,883 Chinese ancestry individuals	NA	9q34.3	COL5A1	rs7044529-T	0.15	5E-12		0.13	[0.091-0.169] unit decrease	Affymetrix, Illumina [~ 1000000] (imputed)	N
1634	chr9	137568050	137568051	rs7044529	20719862	Vitart V	2010-08-18	Hum Mol Genet	New loci associated with central cornea thickness include COL5A1, AKAP13 and AVGR8.	Central corneal thickness	1,445 European ancestry individuals	5,882 European ancestry individuals	9q34.3	COL5A1	rs7044529-A	NR	5E-8		0.13	[0.09-0.18] unit decrease	Illumina [~ 2000000] (imputed)	N
1635	chr9	137657136	137657137	rs562818161	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,931 Sub-Saharan African ancestry males	NA	9q34.3		rs562818161-C	0.986403	9E-7		0.0555158	[0.032-0.079] unit decrease	Illumina [13900000] (imputed)	N
1635	chr9	137667137	137667138	rs9409991	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		COL5A1	rs9409991-?	NR	8E-9	(male)	1.35395	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1635	chr9	137667137	137667138	rs9409991	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		COL5A1	rs9409991-?	NR	1E-9		1.04183	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1635	chr9	137704781	137704782	rs7874142	20834067	Yashin AI	2010-09-01	Aging (Albany NY)	Joint influence of small-effect genetic variants on human longevity.	Longevity	1,173 individuals	NA	9q34.3	COL5A1	rs7874142-?	NR	1E-6	(less than or equal to)			NR [~ 550000]	N
1635	chr9	137720563	137720564	rs367750384	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9q34.3	NR	rs367750384-T	0.0122	5E-9	(FGA)	0.3803	NR unit increase	Illumina [1671387] (imputed)	N
1635	chr9	137741796	137741797	rs140701862	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	9q34.3	LOC101448202, MIR3689A	rs140701862-C	0.120434377	4E-6		1.0960294	[1.053974019-1.139762785]	Illumina [10439017] (imputed)	N
1635	chr9	137750474	137750475	rs61502187	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FCN2	5,365 Icelandic ancestry individuals	NA	9q34.3		rs61502187-T	0.07178	2E-36		0.458569	[0.39-0.53] unit decrease	Illumina [7506463] (imputed)	N
1635	chr9	137752539	137752540	rs57136797	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FCN2	5,346 Icelandic ancestry individuals	NA	9q34.3		rs57136797-T	0.1373	9E-87		0.476317	[0.43-0.52] unit decrease	Illumina [7506463] (imputed)	N
1635	chr9	137752539	137752540	rs57136797	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	9q34.3	FCN2	rs57136797-A	0.845	2E-48	(FCN2, 3313_21_2)	0.4840615	[0.42-0.55] unit increase	Illumina [> 1000000] (imputed)	N
1635	chr9	137752539	137752540	rs57136797	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q34.3	FCN2	rs57136797-T	0.164	4E-72	(Ficolin-2, FCN2.3313.21.2)	0.63	[0.55-0.71] unit decrease	Affymetrix [10572788] (imputed)	N
1635	chr9	137755952	137755953	rs60798663	31050781	Zhao SX	2019-05-03	JAMA Netw Open	Assessment of Molecular Subtypes in Thyrotoxic Periodic Paralysis and Graves Disease Among Chinese Han Adults: A Population-Based Genome-Wide Association Study.	Thyrotoxic hypokalemic periodic paralysis in Graves disease	171 Han Chinese ancestry cases with TPP, 1,404 Han Chinese ancestry cases without TPP	NA	9q34.3	NR	rs60798663-?	NR	3E-6		2.46	NR	Illumina [2752055] (imputed)	N
1636	chr9	137766371	137766372	rs3128635	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FCN2	5,365 Icelandic ancestry individuals	NA	9q34.3		rs3128635-C	0.2199	1E-46		0.325004	[0.28-0.37] unit increase	Illumina [7506463] (imputed)	N
1636	chr9	137776718	137776719	rs12685659	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FCN2	5,365 Icelandic ancestry individuals	NA	9q34.3		rs12685659-T	0.1001	2E-305		1.0646	[1.01-1.12] unit decrease	Illumina [7506463] (imputed)	N
1636	chr9	137776718	137776719	rs12685659	32492067	Ruffieux H	2020-06-03	PLoS Comput Biol	A fully joint Bayesian quantitative trait locus mapping of human protein abundance in plasma.	Protein quantitative trait loci	394 European ancestry individuals	548 European ancestry individuals	9q34.3	NR	rs12685659-?	NR	3E-16	(FCN2)			Illumina [~ 4000000] (imputed)	N
1636	chr9	137776718	137776719	rs12685659	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	9q34.3	FCN2	rs12685659-A	0.89703125	1E-164	(FCN2, 13717_15_3)	1.0601424	[0.99-1.13] unit increase	Illumina [> 1000000] (imputed)	N
1636	chr9	137777503	137777504	rs12684512	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FCN2	5,346 Icelandic ancestry individuals	NA	9q34.3		rs12684512-A	0.1002	5E-66		0.477952	[0.42-0.53] unit decrease	Illumina [7506463] (imputed)	N
1636	chr9	137779090	137779091	rs7851696	29234017	Carayol J	2017-12-12	Nat Commun	Protein quantitative trait locus study in obesity during weight-loss identifies a leptin regulator.	Protein levels in obesity	494 European ancestry individuals	NA	9q34.3	NR	rs7851696-?	NR	5E-15	(FCN2)	0.38	[0.28-0.48] unit decrease	Illumina [4020654] (imputed)	N
1636	chr9	137779250	137779251	rs76267164	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q34.3	NR	rs76267164-A	0.007	7E-19	(Ficolin-2, FCN2.3313.21.2)	1.36	[1.07-1.65] unit decrease	Affymetrix [10572788] (imputed)	N
1636	chr9	137779606	137779607	rs73664188	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q34.3	NR	rs73664188-C	0.111	7E-57	(Ficolin-2, FCN2.3313.21.2)	0.6	[0.52-0.68] unit decrease	Affymetrix [10572788] (imputed)	N
1636	chr9	137797174	137797175	rs2989736	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	9q34.3	FCN1	rs2989736-A	0.4396985	1E-13	(EA, Ficolin-2)	0.3243	[0.24-0.41] unit increase	Affymetrix [509946]	N
1636	chr9	137809860	137809861	rs10117466	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q34.3	NR	rs10117466-T	0.334	1E-17	(Ficolin-1, FCN1.3613.62.5)	0.22	[0.16-0.28] unit increase	Affymetrix [10572788] (imputed)	N
1636	chr9	137810258	137810259	rs10120023	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FCN1	5,362 Icelandic ancestry individuals	NA	9q34.3		rs10120023-T	0.3473	2E-18		0.170389	[0.13-0.21] unit increase	Illumina [7506463] (imputed)	N
1636	chr9	137816458	137816459	rs2094962	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	9q34.3	NR	rs2094962-C	0.901323053404539	5E-6	(IGP54)	0.2366	[0.14-0.34] unit decrease	Illumina [~ 2500000] (imputed)	N
1636	chr9	137842499	137842500	rs10858300	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	9q34.3	Intergenic	rs10858300-T	0.250503	6E-17	(Ficolin-1)	0.4086	[0.31-0.5] unit increase	Affymetrix [509946]	N
1636	chr9	137848925	137848941	rs765707465	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	9q34.3		rs765707465-G	0.246178	4E-11		0.017378509	[0.012-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1636	chr9	137853000	137853001	rs4842200	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q34.3	NR	rs4842200-C	0.305443	1E-20				Affymetrix, Illumina [24649327] (imputed)	N
1636	chr9	137853000	137853001	rs4842200	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	9q34.3		rs4842200-?	NR	2E-15				NR [~ 8900000] (imputed)	N
1636	chr9	137854871	137854872	rs11103602	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q34.3	FCN1	rs11103602-A	0.258	2E-106	(Ficolin-1, FCN1.3613.62.5)	0.58	[0.52-0.64] unit increase	Affymetrix [10572788] (imputed)	N
1636	chr9	137855205	137855206	rs1038193	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	9q34.3	NR	rs1038193-G	0.264159	1E-12		0.017771866	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1636	chr9	137855205	137855206	rs1038193	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	9q34.3		rs1038193-G	0.264123	6E-17		0.021046547	[0.016-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1636	chr9	137855205	137855206	rs1038193	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	9q34.3		rs1038193-G	0.26413	3E-9		0.014885165	[0.01-0.0198] unit decrease	Affymetrix [93095623] (imputed)	N
1636	chr9	137855205	137855206	rs1038193	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	9q34.3	NR	rs1038193-G	0.264671	5E-22		0.020257	[0.016-0.024] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
1636	chr9	137855205	137855206	rs1038193	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q34.3	NR	rs1038193-G	0.281002	3E-22				Affymetrix, Illumina [23114412] (imputed)	N
1636	chr9	137855205	137855206	rs1038193	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	9q34.3	NR	rs1038193-G	0.264568	1E-24		0.022509	[0.018-0.027] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
1636	chr9	137856842	137856843	rs7873100	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FCN1	5,362 Icelandic ancestry individuals	NA	9q34.3		rs7873100-G	0.2573	3E-98		0.434294	[0.39-0.47] unit increase	Illumina [7506463] (imputed)	N
1636	chr9	137857445	137857446	rs11103604	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	9q34.3	FCN1	rs11103604-G	0.73828125	4E-66	(FCN1, 3613_62_5)	0.468612	[0.42-0.52] unit decrease	Illumina [> 1000000] (imputed)	N
1637	chr9	137906693	137906694	rs11103631	28011148	Zhang M	2016-12-21	J Invest Dermatol	A Genome-Wide Association Study of Basal Transepidermal Water Loss Finds that Variants at 9q34.3 Are Associated with Skin Barrier Function.	Trans-epidermal water loss	611 Han Chinese ancestry individuals	366 Han Chinese ancestry individuals	9q34.3	FCN1, OLFM1	rs11103631-G	0.320	8E-10		0.201	[0.14-0.27] unit decrease	Illumina [7998413] (imputed)	N
1637	chr9	137919092	137919093	rs5016540	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric bone mineral density (hip)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	9q34.3	NR	rs5016540-G	0.213	3E-6		0.208	[0.12-0.30] unit increase	Illumina [~ 6600000] (imputed)	N
1637	chr9	137935183	137935184	rs638891	22205395	Tekola Ayele F	2011-12-29	Immunogenetics	Genome-wide associated loci influencing interleukin (IL)-10, IL-1Ra, and IL-6 levels in African Americans.	Interleukin-10 levels	704 African American individuals	425 West African individuals	9q34.3	OLFM1	rs638891-A	0.01	2E-6	(AA)	0.15	unit increase	Affymetrix [5396780] (imputed)	N
1637	chr9	137970848	137970849	rs34756027	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	9q34.3		rs34756027-C	0.763	1E-9		0.009	[0.007-0.011] unit decrease	NR [NR] (imputed)	N
1637	chr9	137975747	137975748	rs7019640	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking initiation (ever regular vs never regular)	up to 433,216 European ancestry individuals	NA	9q34.3	OLFM1	rs7019640-T	0.23	1E-8		0.0155	[0.01-0.021] unit increase	Illumina [~ 250000] (imputed)	N
1637	chr9	137977032	137977033	rs28647734	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	9q34.3	OLFM1	rs28647734-A	0.2109	4E-10		0.016591573	[0.011-0.022] unit increase	Affymetrix [11514654] (imputed)	N
1637	chr9	137977302	137977303	rs34683808	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	9q34.3	OLFM1	rs34683808-C	0.0986822853809181	6E-6	(G_unclassified_F_Coriobacteriaceae_HB)	0.394254	[0.22-0.56] unit decrease	Illumina [7711310] (imputed)	N
1637	chr9	137978359	137978360	rs11103667	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	9q34.3		rs11103667-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1637	chr9	137978359	137978360	rs11103667	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	9q34.3	OLFM1	rs11103667-C	0.81484375	3E-9	(OLFM1, 5703_26_3)	0.1932553	[0.13-0.26] unit decrease	Illumina [> 1000000] (imputed)	N
1637	chr9	137982620	137982621	rs660701	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	9q34.3	NR	rs660701-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
1637	chr9	137989784	137989785	rs10858334	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	9q34.3	NR	rs10858334-G	0.14	2E-11		0.0109564	[0.0078-0.0141] unit increase	NR [9732723] (imputed)	N
1637	chr9	137989784	137989785	rs10858334	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	9q34.3	NR	rs10858334-G	0.14	1E-9		0.02287098	[0.016-0.03] unit increase	NR [~ 10000000] (imputed)	N
1637	chr9	137989784	137989785	rs10858334	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	9q34.3	NA	rs10858334-C	0.8484	5E-9		0.0148	[0.0099-0.0197] unit decrease	NR [~ 27400000] (imputed)	N
1637	chr9	137989784	137989785	rs10858334	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	9q34.3	Intergenic	rs10858334-C	0.8617	1E-9	(MTAG)	0.0157	[0.011-0.021] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1637	chr9	137989784	137989785	rs10858334	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	9q34.3	Intergenic	rs10858334-C	0.8617	2E-10		0.018	[0.013-0.023] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1637	chr9	138008554	138008555	rs13292946	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	6-month creatinine clearance change response to tenofovir treatment in HIV infection (treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	9q34.3	NR	rs13292946-?		2E-6	(Hispanic)			Illumina [~ 5140000] (imputed)	N
1637	chr9	138009778	138009779	rs11103683	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	6-month creatinine clearance change response to tenofovir treatment in HIV infection (treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	9q34.3	NR	rs11103683-?		4E-6	(Hispanic)			Illumina [~ 5140000] (imputed)	N
1637	chr9	138012069	138012070	rs11103684	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	6-month creatinine clearance change response to tenofovir treatment in HIV infection (treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	9q34.3	NR	rs11103684-?		3E-6	(Hispanic)			Illumina [~ 5140000] (imputed)	N
1637	chr9	138012411	138012412	rs11834	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	6-month creatinine clearance change response to tenofovir treatment in HIV infection (treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	9q34.3	NR	rs11834-?		3E-6	(Hispanic)			Illumina [~ 5140000] (imputed)	N
1637	chr9	138013318	138013319	rs7039098	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	6-month creatinine clearance change response to tenofovir treatment in HIV infection (treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	9q34.3	NR	rs7039098-?		2E-7	(Hispanic)			Illumina [~ 5140000] (imputed)	N
1637	chr9	138013364	138013365	rs7035473	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	6-month creatinine clearance change response to tenofovir treatment in HIV infection (treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	9q34.3	NR	rs7035473-?		2E-7	(Hispanic)			Illumina [~ 5140000] (imputed)	N
1637	chr9	138013414	138013415	rs7047901	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	6-month creatinine clearance change response to tenofovir treatment in HIV infection (treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	9q34.3	NR	rs7047901-?		2E-7	(Hispanic)			Illumina [~ 5140000] (imputed)	N
1637	chr9	138014551	138014552	rs10119043	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	6-month creatinine clearance change response to tenofovir treatment in HIV infection (treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	9q34.3	NR	rs10119043-?		2E-7	(Hispanic)			Illumina [~ 5140000] (imputed)	N
1638	chr9	138028676	138028677	rs3849221	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	9q34.3	OLFM1	rs3849221-A	0.409	1E-6	(Estradiol )	0.03	[NR] pg/mL increase	Illumina [899892]	N
1638	chr9	138029700	138029701	rs10776934	22095909	Lange CM	2011-11-16	Hepatology	Serum ferritin levels are associated with a distinct phenotype of chronic hepatitis C poorly responding to pegylated interferon-alpha and ribavirin therapy.	Response to hepatitis C treatment	707 European ancestry cases	NA	9q34.3	OLFM1	rs10776934-T	NR	1E-6		0.281	[0.17-0.39] ug/L decrease	NR [NR]	N
1638	chr9	138069125	138069126	rs78415000	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Deep white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	9q34.3	RP11-399H11.3	rs78415000-A	0.0713	9E-6		0.0529	[0.03-0.076] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1638	chr9	138099026	138099027	rs145613654	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		AL390778.1	rs145613654-?	NR	1E-9	(male)	4.12664	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1638	chr9	138126645	138126646	rs12380243	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	9q34.3	KIAA0649	rs12380243-?	NR	7E-6	(SM 22:0)	0.17791684	[0.1-0.26] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1638	chr9	138136173	138136174	rs1106260	33106475	Li QS	2020-10-26	Transl Psychiatry	Genome-wide association studies of antidepressant class response and treatment-resistant depression.	Response to SSRI (responders vs non-responders)	13,130 European ancestry responders, 6,610 European ancestry non-responders	NA	9q34.3	NR	rs1106260-T	NR	2E-7		0.8889	NR	Illumina [at least 560000] (imputed)	N
1638	chr9	138139328	138139329	rs75366062	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Colorectal cancer	3,351 White British ancestry cases, 271,479 White British ancestry controls	NA	9q34.3		rs75366062-?	NR	6E-6		1.27185	[1.17-1.38]	NR [675173]	N
1638	chr9	138139505	138139506	rs10858374	30557369	Yodsurang V	2018-12-17	PLoS One	Genome-wide association study (GWAS) of ovarian cancer in Japanese predicted regulatory variants in 22q13.1.	Ovarian cancer	681 Japanese ancestry cases, 17,492 Japanese ancestry controls	NA	9q34.3	C9orf62	rs10858374-T	0.1106	1E-6		1.4684289	[1.26-1.72]	Illumina [7521072] (imputed)	N
1638	chr9	138139778	138139779	rs2298247	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Thioalkalivibrionaceae abundance in stool	5,959 Finnish ancestry individuals	NA	9q34.3		rs2298247-A	0.0313506	3E-8		0.0660284	[0.043-0.089] unit decrease	Illumina [7980478] (imputed)	N
1639	chr9	138268601	138268602	rs75824829	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental extreme longevity (95 years and older)	1,339 middle-aged British cases, 40,934 middle-aged British controls	NA	9q34.3	NR	rs75824829-?	NR	4E-8		0.01326	[0.0085-0.018] unit decrease	Affymetrix [9658292] (imputed)	N
1639	chr9	138275775	138275776	rs10858396	21784300	Mick E	2011-07-13	J Am Acad Child Adolesc Psychiatry	Genome-wide association study of the child behavior checklist dysregulation profile.	Attention deficit hyperactivity disorder	341 ADHD case offspring from 339 trios	NA	9q34.3	intergenic	rs10858396-?	NR	6E-6				Illumina [835136]	N
1640	chr9	138357704	138357705	rs10745363	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	9q34.3	PPP1R26-AS1	rs10745363-A	0.395	4E-8	(HexCer d16:1/22:0)	0.1107	[0.071-0.15] unit increase	Illumina [~ 47000000] (imputed)	N
1640	chr9	138359585	138359586	rs7019459	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	9q34.3	C9orf116	rs7019459-?	NR	7E-6	(adenosine monophosphate)	2.4581823	[1.38-3.53] unit increase	Affymetrix [at least 2500000] (imputed)	N
1640	chr9	138362212	138362212	rs71381890	29532581	Hallfors J	2018-03-13	Addict Biol	Genome-wide association study in Finnish twins highlights the connection between nicotine addiction and neurotrophin signaling pathway.	Nicotine dependence symptom count	1,715 Finnish ancestry ever smoker individuals from 739 families	NA	9q34.3	NR	rs71381890-GT	0.319	1E-6		0.31	[0.19-0.43] unit increase	Illumina [9469131] (imputed)	N
1640	chr9	138375871	138375872	rs2254812	33575800	Mulford AJ	2021-02-11	Hum Mol Genet	Genetically regulated expression underlies cellular sensitivity to chemotherapy in diverse populations.	Carboplatin drug response (IC50)	90 East Asian ancestry individuals	NA	9q34.3	NR	rs2254812-G	NR	5E-9		0.77	unit increase	NR [5206187] (imputed)	N
1641	chr9	138419279	138419280	rs59012839	34607834	Dawed AY	2021-10-04	Diabetes Care	Genome-Wide Meta-analysis Identifies Genetic Variants Associated With Glycemic Response to Sulfonylureas.	Reduction in HbA1c levels in response to sulfonylureas treatment in type 2 diabetes	5,485 European ancestry individuals	NA	9q34.3		rs59012839-G	0.097	5E-6		0.216643	[0.12-0.31] unit decrease	Affymetrix, Illumina [538635] (imputed)	N
1641	chr9	138428076	138428077	rs62577244	29178545	Gao C	2017-11-27	Obesity (Silver Spring)	Genome-Wide Study of Subcutaneous and Visceral Adipose Tissue Reveals Novel Sex-Specific Adiposity Loci in Mexican Americans.	Subcutaneous adipose tissue (sex interaction)	580 Mexican American female individuals, 403 Mexican American male individuals.	NA	9q34.3	LCN1, OBP2A	rs62577244-?	NR	1E-7		2.87	unit decrease	Illumina [7708309] (imputed)	N
1641	chr9	138428076	138428077	rs62577244	29178545	Gao C	2017-11-27	Obesity (Silver Spring)	Genome-Wide Study of Subcutaneous and Visceral Adipose Tissue Reveals Novel Sex-Specific Adiposity Loci in Mexican Americans.	Subcutaneous adipose tissue	580 Mexican American female individuals, 403 Mexican American male individuals.	NA	9q34.3	LCN1, OBP2A	rs62577244-?	NR	1E-6	(males)	2.626065	NR unit increase	Illumina [7708309] (imputed)	N
1641	chr9	138439805	138439806	rs72766543	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein OBP2B	5,368 Icelandic ancestry individuals	NA	9q34.3		rs72766543-T	0.263	1E-63		0.303833	[0.27-0.34] unit decrease	Illumina [7506463] (imputed)	N
1641	chr9	138440201	138440202	rs2590499	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein OBP2B	5,368 Icelandic ancestry individuals	NA	9q34.3		rs2590499-A	0.3001	3E-52		0.271054	[0.24-0.31] unit increase	Illumina [7506463] (imputed)	N
1641	chr9	138440201	138440202	rs2590499	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q34.3	NR	rs2590499-G	0.717	2E-48	(Odorant-binding protein 2b, OBP2B.5680.54.3)	0.4	[0.34-0.46] unit decrease	Affymetrix [10572788] (imputed)	N
1641	chr9	138440347	138440348	rs55723723	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q34.3	NR	rs55723723-A	0.274	1E-54	(Odorant-binding protein 2b, OBP2B.5680.54.3)	0.43	[0.37-0.49] unit decrease	Affymetrix [10572788] (imputed)	N
1641	chr9	138460444	138460445	rs783771	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	9q34.3	NR	rs783771-T	NR	4E-9		0.0174	[0.012-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
1641	chr9	138467958	138467959	rs697449	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q34.3	RP11-98L5.2	rs697449-T	0.189	2E-172	(Odorant-binding protein 2b, OBP2B.5680.54.3)	0.8	[0.74-0.86] unit increase	Affymetrix [10572788] (imputed)	N
1641	chr9	138468583	138468584	rs705670	30378284	Smajlagic D	2018-10-31	Brain Behav	Moderating effect of mode of delivery on the genetics of intelligence: Explorative genome-wide analyses in ALSPAC.	Performance intelligence quotient (cesarean section interaction)	519 European ancestry child cases, 1,902 European ancestry child controls	NA	9q34.3	NR	rs705670-G	NR	3E-7		2.3	[1.42-3.18] unit increase	Illumina [2141747] (imputed)	N
1641	chr9	138471927	138471928	rs9409964	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein OBP2B	5,368 Icelandic ancestry individuals	NA	9q34.3		rs9409964-A	0.1949	8E-143		0.501733	[0.46-0.54] unit increase	Illumina [7506463] (imputed)	N
1641	chr9	138488242	138488243	rs572692438	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Naive-mature B cell Absolute Count	3,656 Sardinian (founder/genetic isolate) ancestry individuals	NA	9q34.3		rs572692438-A	0.01151	4E-9		0.6933	[0.46-0.92] unit increase	Illumina [18238287] (imputed)	N
1641	chr9	138488242	138488243	rs572692438	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	IgD+ CD38dim B cell Absolute Count	3,656 Sardinian (founder/genetic isolate) ancestry individuals	NA	9q34.3		rs572692438-A	0.01151	3E-10		0.7239	[0.5-0.95] unit increase	Illumina [18238287] (imputed)	N
1641	chr9	138488242	138488243	rs572692438	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	IgD+ CD38+ B cell Absolute Count	3,656 Sardinian (founder/genetic isolate) ancestry individuals	NA	9q34.3		rs572692438-A	0.01151	3E-8		0.6318	[0.41-0.86] unit increase	Illumina [18238287] (imputed)	N
1641	chr9	138490596	138490597	rs7859245	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (negative Marder score)	1,390 European ancestry cases	NA	9q34.3		rs7859245-?	NR	8E-6	(MLM)	0.1832648	[0.1-0.26] unit decrease	Illumina [~ 9000000] (imputed)	N
1641	chr9	138492114	138492115	rs12001041	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (negative Marder score)	1,390 European ancestry cases	NA	9q34.3		rs12001041-A	NR	1E-6	(GLM)	1.2081	[NR] unit increase	Illumina [~ 9000000] (imputed)	N
1641	chr9	138492256	138492257	rs10858128	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 21, depth of nasal alae)	2,187 European ancestry individuals	NA	9q34.3	NR	rs10858128-C	0.3034	3E-6		0.1558	[0.09-0.221] unit increase	Illumina [10677593] (imputed)	N
1641	chr9	138529721	138529722	rs1537415	19897590	Schaefer AS	2009-11-06	Hum Mol Genet	A genome-wide association study identifies GLT6D1 as a susceptibility locus for periodontitis.	Periodontitis	283 European ancestry cases, 972 European ancestry controls	155 European ancestry cases, 341 European ancestry controls	9q34.3	GLT6D1	rs1537415-G	0.38	6E-9		1.59	[1.36-1.86]	Affymetrix [345646]	N
1642	chr9	138547299	138547300	rs11788850	29855589	Chernus J	2018-05-31	Sci Rep	GWAS reveals loci associated with velopharyngeal dysfunction.	Velopharyngeal dysfunction	54 Hispanic or Latin American and unknown ancestry cases, 922 Hispanic or Latin American and unknown ancestry controls	NA	9q34.3	NR	rs11788850-?	NR	5E-6		0.12329972	[NR] unit decrease	Illumina [at least 269494] (imputed)	N
1642	chr9	138589414	138589415	rs141406935	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Pancreatic cancer	768 White British ancestry cases, 264,559 White British ancestry controls	NA	9q34.3		rs141406935-?	NR	1E-7		7.75036	[6.99-8.51]	NR [663102]	N
1642	chr9	138642911	138642912	rs10122976	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	9q34.3	Intergenic	rs10122976-A	0.4411	4E-9	(MTAG)	0.0098	[0.0065-0.0131] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1643	chr9	138690388	138690389	rs74995296	31826910	Lu Y	2019-12-11	Cancer Epidemiol Biomarkers Prev	Identification of novel loci and new risk variant in known loci for colorectal cancer risk in East Asians.	Colorectal cancer	23,572 East Asian ancestry cases, 48,700 East Asian ancestry controls	58,131 European ancestry cases, 67,347 European ancestry controls	9q34.3		rs74995296-C	0.6759	8E-6	(East Asian)	1.08	[1.04-1.12]	Affymetrix, Illumina [up to 47000000] (imputed)	N
1643	chr9	138699436	138699437	rs17040481	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	9q34.3	NR	rs17040481-?	NR	2E-12				Affymetrix [NR]	N
1643	chr9	138712859	138712860	rs149524209	33637690	He L	2021-02-26	Transl Psychiatry	Exome-wide age-of-onset analysis reveals exonic variants in ERN1 and SPPL2C associated with Alzheimer's disease.	Alzheimer's disease (age of onset) in APOE e4 non-carriers	7,185 European ancestry individuals	5,416 European ancestry individuals	9q34.3		rs149524209-?	NR	1E-6		4.44		NR [98334]	N
1644	chr9	138824256	138824257	rs117146485	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Colorectal cancer	3,351 White British ancestry cases, 271,479 White British ancestry controls	NA	9q34.3		rs117146485-?	NR	1E-6		1.62541	[1.43-1.82]	NR [675173]	N
1644	chr9	138824256	138824257	rs117146485	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-6 levels	8,189 Finnish ancestry individuals	NA	9q34.3	NR	rs117146485-C	NR	6E-6		0.2829	[0.16-0.41] SD units increase	NR [10700000] (imputed)	N
1644	chr9	138824256	138824257	rs117146485	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-4 levels	8,124 Finnish ancestry individuals	NA	9q34.3	NR	rs117146485-C		3E-6		0.2924	[0.17-0.42] SD units increase	NR [10700000] (imputed)	N
1644	chr9	138824898	138824899	rs186876435	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	9q34.3	UBAC1	rs186876435-T	0.00231999999999999	3E-10		0.15898553	[0.11-0.21] unit decrease	Affymetrix [93095623] (imputed)	N
1644	chr9	138824898	138824899	rs186876435	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	9q34.3	UBAC1	rs186876435-T	0.00232200000000005	3E-10		0.15943317	[0.11-0.21] unit decrease	Affymetrix [93095623] (imputed)	N
1644	chr9	138825116	138825117	rs6569	32699080	Brhane Y	2020-07-22	Cancer Epidemiol Biomarkers Prev	Genetic determinants of lung cancer prognosis in never smokers: A pooled analysis in the International Lung Cancer Consortium.	Lung adenocarcinoma (survival time) in never smokers	1,065 European ancestry individuals	871 Japanese ancestry individuals	9q34.3	UBAC1	rs6569-A	NR	6E-7	(EA)	0.72	[0.63-0.82]	Illumina [629283] (imputed)	N
1645	chr9	138942866	138942867	rs572550786	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (hospitalized covid vs population)	613 European ancestry cases, 680,416 European ancestry controls, 140 Hispanic or Latin American cases, 94,327 Hispanic or Latin American controls, 49 Black or African American cases, 22,410 Black or African American controls	NA	9q34.3		rs572550786-?	NR	8E-6		0.9728505	[0.55-1.4] unit decrease	Illumina [9875426] (imputed)	N
1645	chr9	138947166	138947167	rs4842091	28076899	Taylor KE	2017-01-11	Arthritis Rheumatol	Genome-Wide Association Analysis Reveals Genetic Heterogeneity of Sjogren's Syndrome According to Ancestry.	Sjogren's syndrome	585 European ancestry cases, 1,546 European ancestry controls	NA	9q34.3	NACC2	rs4842091-?		5E-6		1.39	[1.21-1.61]	Illumina [1444884]	N
1645	chr9	139029059	139029060	rs74969320	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial lung adenocarcinoma	775 European ancestry cases, 31,563 European ancestry controls	NA	9q34.3	NR	rs74969320-A	0.008	4E-6		3.8	[2.16-6.70]	Illumina [8672852] (imputed)	N
1645	chr9	139031643	139031644	rs144498432	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Initial pursuit acceleration	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	9q34.3	C9orf69	rs144498432-A	0.1667	6E-6	(African)			Illumina [4404269] (imputed)	N
1645	chr9	139031912	139031913	rs141052170	29703844	van Zuydam NR	2018-04-27	Diabetes	A Genome-Wide Association Study of Diabetic Kidney Disease in Subjects With Type 2 Diabetes.	Diabetic kidney disease in type 2 diabetes (ESRD vs. no ESRD)	371 European ancestry cases with end-stage renal disease, 4,471 European ancestry cases without end-stage renal disease	1,640 European ancestry cases with end-stage renal disease, 7,803 European ancestry cases without end-stage renal disease, 877 Asian cases with end-stage renal disease, 4,510 Asian cases without end-stage renal disease, 20 Chinese ancestry cases with end-stage renal disease, 398 Chinese ancestry cases without end-stage renal disease	9q34.3	NR	rs141052170-?		3E-6	(EA)	2.13	[1.07-4.23]	Affymetrix, Illumina [up to 9343778] (imputed)	N
1646	chr9	139082795	139082796	rs10858244	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	9q34.3	LHX3	rs10858244-A	NR	3E-9		0.018251	[0.012-0.024] unit increase	Affymetrix [321016] (imputed)	N
1646	chr9	139083018	139083019	rs11103372	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	9q34.3	LHX3	rs11103372-A	0.1574	1E-7		0.0521	[0.033-0.071] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1646	chr9	139087248	139087249	rs570706529	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	9q34.3	NR	rs570706529-?	NR	4E-6		0.0078742	[0.0045-0.0112] unit increase	Affymetrix [805426] (imputed)	N
1646	chr9	139089678	139089679	rs7860634	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	9q34.3	NR	rs7860634-A	NR	3E-19		0.0226	[0.018-0.028] unit increase	Affymetrix [9000000] (imputed)	N
1646	chr9	139089678	139089679	rs7860634	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	9q34.3	NR	rs7860634-A	NR	4E-9		0.0141	[0.0094-0.0188] unit increase	Affymetrix [9000000] (imputed)	N
1646	chr9	139089678	139089679	rs7860634	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	9q34.3	NR	rs7860634-A	NR	3E-9		0.0143	[0.0096-0.019] unit decrease	Affymetrix [9000000] (imputed)	N
1646	chr9	139089678	139089679	rs7860634	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	9q34.3	LHX3	rs7860634-A	0.572647	1E-11		0.0151357725	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1646	chr9	139089678	139089679	rs7860634	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q34.3	NR	rs7860634-A	0.52423	4E-11				Affymetrix, Illumina [24332387] (imputed)	N
1646	chr9	139089678	139089679	rs7860634	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	9q34.3	NR	rs7860634-A	0.57243	4E-13		0.014269	[0.01-0.018] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
1646	chr9	139089678	139089679	rs7860634	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	9q34.3		rs7860634-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1646	chr9	139089678	139089679	rs7860634	23408906	Porcu E	2013-02-07	PLoS Genet	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 14,459 European ancestry females, up to 10,936 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males	NA	9q34.3	LHX3	rs7860634-A	0.53	5E-8	(FT4-Females)	0.098	[0.063-0.133] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1646	chr9	139089678	139089679	rs7860634	23408906	Porcu E	2013-02-07	PLoS Genet	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 14,459 European ancestry females, up to 10,936 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males	NA	9q34.3	LHX3	rs7860634-A	0.53	2E-8	(FT4-Males)	0.108	[0.071-0.145] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1646	chr9	139089678	139089679	rs7860634	23408906	Porcu E	2013-02-07	PLoS Genet	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 14,459 European ancestry females, up to 10,936 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males	NA	9q34.3	LHX3	rs7860634-A	0.53	2E-14	(FT4)	0.102	[0.077-0.127] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1646	chr9	139089749	139089750	rs12379555	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	9q34.3	LHX3	rs12379555-T	NR	3E-11		0.0253794	[0.018-0.033] unit increase	Affymetrix [321016] (imputed)	N
1646	chr9	139094170	139094171	rs12378344	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein QSOX2	5,354 Icelandic ancestry individuals	NA	9q34.3		rs12378344-G	0.4818	7E-40		0.235679	[0.2-0.27] unit increase	Illumina [7506463] (imputed)	N
1646	chr9	139094170	139094171	rs12378344	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	9q34.3	QSOX2	rs12378344-G	0.475625	6E-26	(QSOX2, 8397_147_3)	0.26223865	[0.21-0.31] unit increase	Illumina [> 1000000] (imputed)	N
1646	chr9	139094179	139094180	rs79198012	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	9q34.3	LHX3	rs79198012-A	NR	2E-9		0.0266737	[0.018-0.035] unit increase	Affymetrix [321016] (imputed)	N
1646	chr9	139094772	139094773	rs2274115	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	9q34.3	LHX3	rs2274115-G	0.7	2E-10		1.05	[1.03-1.07]	Illumina [34740186] (imputed)	N
1646	chr9	139094804	139094805	rs2274116	26635082	Soler Artigas M	2015-12-04	Nat Commun	Sixteen new lung function signals identified through 1000 Genomes Project reference panel imputation.	Lung function (FVC)	38,199 European ancestry adults	54,550 European ancestry adults, 5,062 children	9q34.3	LHX3	rs2274116-C	NR	6E-14	(adults)	0.039	[0.029-0.049] unit increase	Affymetrix, Illumina [8694268] (imputed)	N
1646	chr9	139094804	139094805	rs2274116	26635082	Soler Artigas M	2015-12-04	Nat Commun	Sixteen new lung function signals identified through 1000 Genomes Project reference panel imputation.	Lung function (FEV1)	38,199 European ancestry adults	54,550 European ancestry adults, 5,062 children	9q34.3	LHX3	rs2274116-C	NR	3E-8	(adults)	0.029	[0.019-0.039] unit increase	Affymetrix, Illumina [8694268] (imputed)	N
1646	chr9	139095270	139095271	rs3758197	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	9q34.3		rs3758197-G	NR	7E-11		0.0117	[0.0082-0.0152] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
1646	chr9	139096897	139096898	rs10858245	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	9q34.3	LHX3	rs10858245-G	NR	1E-9		0.0211651	[0.014-0.028] unit increase	Affymetrix [321016] (imputed)	N
1646	chr9	139097134	139097135	rs11103377	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	9q34.3	NR	rs11103377-G	0.5385059999999999	1E-32		0.00981359	[0.0082-0.0115] unit increase	Affymetrix [16582909] (imputed)	N
1646	chr9	139097134	139097135	rs11103377	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	9q34.3	NR	rs11103377-G	0.538173	6E-11		0.00723973	[0.0048-0.0097] unit increase	Affymetrix [16585854] (imputed)	N
1646	chr9	139097134	139097135	rs11103377	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	9q34.3	NR	rs11103377-G	0.5385059999999999	1E-28		0.0101503	[0.0083-0.012] unit increase	Affymetrix [16582965] (imputed)	N
1646	chr9	139097134	139097135	rs11103377	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	9q34.3	NR	rs11103377-G	0.538173	5E-9		0.00760687	[0.0048-0.0104] unit increase	Affymetrix [16585866] (imputed)	N
1646	chr9	139097134	139097135	rs11103377	25743335	Taylor PN	2015-03-06	Nat Commun	Whole-genome sequence-based analysis of thyroid function.	Free thyroxine concentration	2,287 European ancestry whole-genome sequenced individuals, 11,364 European ancestry individuals	NA	9q34.3	LHX3	rs11103377-G	0.496	1E-11		0.087	[0.062-0.112] unit increase	Illumina [at least 9558836] (imputed)	N
1646	chr9	139097349	139097350	rs11103379	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	9q34.3	LHX3	rs11103379-C	0.537966	2E-9		0.0144186	[0.01-0.018] unit decrease	Affymetrix [93095623] (imputed)	N
1646	chr9	139097349	139097350	rs11103379	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	9q34.3	NR	rs11103379-C	0.537295	3E-13		0.013991	[0.01-0.018] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1646	chr9	139097349	139097350	rs11103379	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	9q34.3		rs11103379-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1646	chr9	139097772	139097773	rs11103381	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	9q34.3	LHX3, QSOX2	rs11103381-?		1E-14				Affymetrix, Illumina [NR] (imputed)	N
1646	chr9	139099072	139099073	rs3780190	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	9q34.3		rs3780190-G	NR	1E-8		0.0104	[0.0069-0.0139] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
1646	chr9	139099072	139099073	rs3780190	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	9q34.3		rs3780190-G	NR	6E-12		0.0137	[0.0098-0.0176] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
1646	chr9	139099072	139099073	rs3780190	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q34.3	NR	rs3780190-G	0.525383	2E-13				Affymetrix, Illumina [24246363] (imputed)	N
1646	chr9	139099072	139099073	rs3780190	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	9q34.3	NR	rs3780190-G	0.544944	2E-25		0.0119886	[0.0097-0.0143] unit increase	Affymetrix [16582621] (imputed)	N
1646	chr9	139099072	139099073	rs3780190	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	9q34.3	NR	rs3780190-G	0.544944	1E-25		0.0126366	[0.01-0.015] unit increase	Affymetrix [16582614] (imputed)	N
1646	chr9	139100412	139100413	rs7024579	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	9q34.3	QSOX2	rs7024579-T	0.2889	8E-16		0.0023	[0.0015-0.0031] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
1646	chr9	139100412	139100413	rs7024579	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	9q34.3	QSOX2	rs7024579-T	0.3154	4E-20		0.0233	[0.018-0.028] unit decrease	Affymetrix [19819130] (imputed)	N
1646	chr9	139100412	139100413	rs7024579	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	9q34.3	QSOX2	rs7024579-T	0.3154	9E-12		0.0172	[0.012-0.022] unit decrease	Affymetrix [19819130] (imputed)	N
1646	chr9	139101582	139101583	rs62578989	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	9q34.3		rs62578989-T	0.363025	3E-33		0.0261203	[0.022-0.03] unit increase	Illumina [13479295] (imputed)	N
1646	chr9	139101582	139101583	rs62578989	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	9q34.3	QSOX2	rs62578989-T	NR	3E-12		0.0207833	[0.015-0.027] unit increase	Affymetrix [321016] (imputed)	N
1646	chr9	139101582	139101583	rs62578989	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	9q34.3	QSOX2	rs62578989-?	NR	4E-45		0.043255072	[0.037-0.049] unit increase	Illumina [27896057] (imputed)	N
1646	chr9	139102830	139102831	rs10858246	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	9q34.3	QSOX2	rs10858246-C	0.3183	2E-20		0.0188	[0.015-0.023] unit decrease	Affymetrix [18391927] (imputed)	N
1646	chr9	139102830	139102831	rs10858246	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FVC)	48,943 European ancestry individuals.	57,176 European ancestry individuals, 38,199 individuals.	9q34.3	LHX3	rs10858246-C	0.3202	4E-8		0.039	[0.025-0.053] unit decrease	Affymetrix [27624732] (imputed)	N
1646	chr9	139103954	139103955	rs7040556	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	9q34.3	QSOX2	rs7040556-A	0.312	6E-8		0.0411	[0.026-0.056] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1646	chr9	139105228	139105229	rs3824359	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	9q34.3		rs3824359-C	NR	2E-9		0.0142	[0.0097-0.0187] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
1646	chr9	139105228	139105229	rs3824359	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	9q34.3	QSOX2	rs3824359-C	NR	2E-12		0.0312098	[0.023-0.04] unit increase	Affymetrix [321114] (imputed)	N
1646	chr9	139105228	139105229	rs3824359	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	9q34.3	QSOX2	rs3824359-C	NR	1E-8		0.0251839	[0.017-0.034] unit increase	Affymetrix [323123] (imputed)	N
1646	chr9	139105228	139105229	rs3824359	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	9q34.3	NR	rs3824359-T	0.86	9E-13		0.019	[0.014-0.024] unit decrease	NR [NR]	N
1646	chr9	139105816	139105816	rs398073595	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q34.3	NR	rs398073595-AAC	0.505	3E-50	(Sulfhydryl oxidase 2, QSOX2.8397.147.3)	0.36	[0.32-0.4] unit decrease	Affymetrix [10572788] (imputed)	N
1646	chr9	139107878	139107879	rs11103387	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	9q34.3		rs11103387-T	NR	6E-16		0.0141	[0.011-0.017] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
1646	chr9	139107878	139107879	rs11103387	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	9q34.3	QSOX2	rs11103387-T	0.353	3E-9		0.0021	[0.0015-0.0027] unit increase	Affymetrix [NR] (imputed)	N
1646	chr9	139107878	139107879	rs11103387	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	9q34.3	QSOX2	rs11103387-C	0.7296	8E-10		6.144	NR z score decrease	Illumina [26237160] (imputed)	N
1646	chr9	139108323	139108324	rs10858248	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q34.3	QSOX2	rs10858248-G	0.502	2E-50	(Sulfhydryl oxidase 2, QSOX2.8397.147.3)	0.36	[0.32-0.4] unit decrease	Affymetrix [10572788] (imputed)	N
1646	chr9	139109079	139109080	rs72773790	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	9q34.3	NR	rs72773790-C		2E-9		0.07	[0.05-0.09] unit increase	NR [NR]	N
1646	chr9	139109079	139109080	rs72773790	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	9q34.3	NR	rs72773790-T	0.6732	4E-9		1.038	[1.03-1.05]	Affymetrix, Illumina [NR] (imputed)	N
1646	chr9	139109525	139109526	rs10858249	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	9q34.3		rs10858249-G	NR	4E-8		0.0144	[0.0093-0.0195] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
1646	chr9	139109860	139109861	rs10122824	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	9q34.3	QSOX2	rs10122824-T	0.3393	6E-14		0.0024	[0.0016-0.0032] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
1646	chr9	139110653	139110654	rs12684650	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	9q34.3	QSOX2	rs12684650-T	NR	8E-11		0.0196514	[0.014-0.026] unit decrease	Affymetrix [321016] (imputed)	N
1646	chr9	139110653	139110654	rs12684650	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	9q34.3		rs12684650-T	0.3134	2E-8		0.09379026	[0.061-0.127] mmHg increase	Affymetrix, Illumina [242866] (imputed)	N
1646	chr9	139110653	139110654	rs12684650	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	9q34.3		rs12684650-T	0.3134	2E-8		0.08517725	[0.055-0.115] mmHg decrease	Affymetrix, Illumina [242866] (imputed)	N
1646	chr9	139110653	139110654	rs12684650	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	9q34.3		rs12684650-?	NR	1E-26				NR [~ 8900000] (imputed)	N
1646	chr9	139111869	139111870	rs7849585	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	9q34.3	QSOX2	rs7849585-T	NR	5E-10		0.0204137	[0.014-0.027] unit increase	Affymetrix [321114] (imputed)	N
1646	chr9	139111869	139111870	rs7849585	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	9q34.3	QSOX2	rs7849585-T	0.331	1E-29		0.036	[0.03-0.042] unit increase	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
1646	chr9	139111869	139111870	rs7849585	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	9q34.3	QSOX2	rs7849585-T	0.33	5E-14		0.029	[NR] unit increase	Affymetrix, Illumina [2834208] (imputed)	N
1646	chr9	139118672	139118673	rs12380852	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	9q34.3	NR	rs12380852-?	NR	2E-16				Affymetrix [~ 8270000] (imputed)	N
1646	chr9	139119214	139119215	rs10858250	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	9q34.3	QSOX2	rs10858250-A	0.75	7E-23		0.052	[0.038-0.066] unit decrease	Affymetrix, Illumina [2704730] (imputed)	N
1646	chr9	139120042	139120043	rs7861829	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	9q34.3	QSOX2	rs7861829-C	0.7288	4E-10		0.0464	[0.032-0.061] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1646	chr9	139120827	139120828	rs11103390	26785701	Wen W	2016-01-20	Sci Rep	Genome-wide association studies in East Asians identify new loci for waist-hip ratio and waist circumference.	Waist circumference adjusted for body mass index	up to 44,609 East Asian individuals	up to 24,146 East Asian individuals, up to 229,290 individuals	9q34.3	QSOX2	rs11103390-C	0.254	5E-7	(East Asian)	0.017	[0.011-0.023] unit increase	Affymetrix, Illumina [at least 1850000] (imputed)	N
1646	chr9	139121739	139121740	rs12338076	20189936	Okada Y	2010-02-26	Hum Mol Genet	A genome-wide association study in 19 633 Japanese subjects identified LHX3-QSOX2 and IGF1 as adult height loci.	Height	19,633 Japanese ancestry individuals	NA	9q34.3	QSOX2, LHX3	rs12338076-C	0.34	2E-8		0.06	[0.04-0.08] cm increase	Illumina [420885]	N
1646	chr9	139134473	139134474	rs11103398	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	9q34.3		rs11103398-C	NR	1E-58		0.0234	[0.021-0.026] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1646	chr9	139134980	139134981	rs7038554	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	9q34.3	QSOX2	rs7038554-G	NR	4E-8		0.0180984	[0.012-0.025] unit increase	Affymetrix [323123] (imputed)	N
1646	chr9	139134980	139134981	rs7038554	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9q34.3		rs7038554-?	NR	1E-63				NR [~ 8900000] (imputed)	N
1646	chr9	139143609	139143610	rs111559287	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9q34.3	NR	rs111559287-T	0.01568	2E-8	(CCDC58)	0.0133	NR unit decrease	Illumina [1671387] (imputed)	N
1646	chr9	139146915	139146916	rs34091955	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	9q34.3	WI2-1959D15.1	rs34091955-G	NR	2E-8		0.0166629	[0.011-0.022] unit increase	Affymetrix [321016] (imputed)	N
1647	chr9	139217488	139217489	rs28714232	29532581	Hallfors J	2018-03-13	Addict Biol	Genome-wide association study in Finnish twins highlights the connection between nicotine addiction and neurotrophin signaling pathway.	Nicotine dependence	873 Finnish ancestry cases and 842 Finnish ancestry controls from 739 families	NA	9q34.3	NR	rs28714232-T	0.34728	8E-6		0.08618749	[0.05-0.12] unit increase	Illumina [9469131] (imputed)	N
1647	chr9	139235414	139235415	rs60980157	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes (adjusted for BMI)	up to 48,286 European ancestry cases, up to 250,671 European ancestry controls	NA	9q34.3	GPSM1	rs60980157-C	0.747	2E-15		1.07	[1.05-1.08]	Affymetrix, Illumina [247470]	N
1647	chr9	139235414	139235415	rs60980157	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes (adjusted for BMI)	48,286 European ancestry cases, 250,671 European ancestry controls, 33,126 African American, East Asian, Hispanic/Latino or South Asian cases, 120,161 African American, East Asian, Hispanic/Latino or South Asian controls	NA	9q34.3	GPSM1	rs60980157-C	0.771	7E-16		1.06	[1.05-1.08]	Affymetrix, Illumina [247470]	N
1647	chr9	139235414	139235415	rs60980157	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes	up to 48,286 European ancestry cases, up to 250,671 European ancestry controls	NA	9q34.3	GPSM1	rs60980157-C	0.747	5E-15		1.07	[1.05-1.09]	Affymetrix, Illumina [247470]	N
1647	chr9	139235414	139235415	rs60980157	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes	48,286 European ancestry cases, 250,671 European ancestry controls, 33,126 African American, East Asian, Hispanic/Latino or South Asian cases, 120,161 African American, East Asian, Hispanic/Latino or South Asian controls	NA	9q34.3	GPSM1	rs60980157-C	0.771	3E-16		1.06	[1.05-1.08]	Affymetrix, Illumina [247470]	N
1647	chr9	139235414	139235415	rs60980157	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	White blood cell count	107,964 Japanese ancestry individuals	NA	9q34.3	GPSM1	rs60980157-?	NR	3E-8		0.04092	[0.026-0.055] unit increase novel	Illumina [6108953] (imputed)	N
1647	chr9	139235414	139235415	rs60980157	23263489	Huyghe JR	2012-12-23	Nat Genet	Exome array analysis identifies new loci and low-frequency variants influencing insulin processing and secretion.	Insulinogenic index	up to 8,229 Finnish ancestry non-diabetic individuals	NA	9q34.3	GPSM1	rs60980157-T	0.3	1E-8		0.072	[0.047-0.097] unit increase	Illumina [242071]	N
1647	chr9	139235605	139235606	rs78403475	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	9q34.3	GPSM1	rs78403475-G	0.8956	1E-6		1.06	[1.03-1.08]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1647	chr9	139237901	139237902	rs28624681	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	9q34.3	GPSM1	rs28624681-C	0.88	6E-21		1.14	1.11-1.18	Illumina [12557761] (imputed)	N
1647	chr9	139238823	139238824	rs3935875	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	9q34.3		rs3935875-G	NR	5E-18		0.0865	[0.067-0.106] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1647	chr9	139239584	139239585	rs28641468	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	9q34.3	NR	rs28641468-C	NR	2E-39		0.0372	[0.032-0.043] unit increase	Affymetrix [9000000] (imputed)	N
1647	chr9	139239584	139239585	rs28641468	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	9q34.3	NR	rs28641468-C	NR	1E-16		0.0239	[0.018-0.03] unit increase	Affymetrix [9000000] (imputed)	N
1647	chr9	139239584	139239585	rs28641468	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	46,511 Asian ancestry cases, 169,776 Asian ancestry controls	NA	9q34.3	NR	rs28641468-C	0.8765	2E-21		0.1345	[0.11-0.16] unit increase	Affymetrix, Illumina [1077427] (imputed)	N
1647	chr9	139239584	139239585	rs28641468	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Type 2 diabetes	approximately 459,000 European ancestry individuals	NA	9q34.3		rs28641468-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1647	chr9	139241029	139241030	rs28505901	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	9q34.3	GPSM1	rs28505901-A	0.244954	4E-6		0.016776	[0.0096-0.0239] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
1647	chr9	139241029	139241030	rs28505901	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	9q34.3	GPSM1	rs28505901-A	0.2485	2E-15		0.024438	[0.018-0.03] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1647	chr9	139241029	139241030	rs28505901	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	9q34.3	GPSM1	rs28505901-G	0.752	7E-26		1.09	[1.07-1.11]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1647	chr9	139241594	139241595	rs28562046	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	24,646 African American cases, 31,446 African American controls	NA	9q34.3	NR	rs28562046-G	0.709	3E-8		0.08	[0.053-0.107] unit increase	Affymetrix, Illumina [945603] (imputed)	N
1647	chr9	139241594	139241595	rs28562046	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	9q34.3	NR	rs28562046-C	0.2431	5E-8		0.0126	[0.0081-0.0171] unit decrease	NR [~ 27400000] (imputed)	N
1647	chr9	139241827	139241828	rs28533815	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	9q34.3		rs28533815-C	NR	8E-23		0.0248	[0.02-0.03] unit increase	Affymetrix, Illumina [20535873] (imputed)	N
1647	chr9	139243333	139243334	rs28429551	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	9q34.3	GPSM1	rs28429551-A	0.757751	2E-8		1.06	[1.04-1.08]	NR [8126035] (imputed)	N
1647	chr9	139243333	139243334	rs28429551	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	9q34.3	NR	rs28429551-T	0.2603	1E-39		0.0734	[0.062-0.084] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
1647	chr9	139244375	139244376	rs28445975	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	9q34.3		rs28445975-G	0.877513927	3E-22		1.1365756	[1.107579607-1.166330658]	Illumina [8919992] (imputed)	N
1647	chr9	139245288	139245289	rs28642252	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	9q34.3		rs28642252-G	0.864191613	3E-25		0.14223015	[0.12-0.17] unit increase	Illumina [13429769] (imputed)	N
1647	chr9	139245288	139245289	rs28642252	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	9q34.3		rs28642252-G	0.867562023	4E-17		0.12314853	[0.094-0.152] unit increase	Illumina [13134967] (imputed)	N
1647	chr9	139245288	139245289	rs28642252	26818947	Imamura M	2016-01-28	Nat Commun	Genome-wide association studies in the Japanese population identify seven novel loci for type 2 diabetes.	Type 2 diabetes	15,463 Japanese ancestry cases, 26,183 Japanese ancestry controls	20,490 East Asian ancestry cases, 22,922 East Asian ancestry controls, 38,947 European ancestry cases, 121,903 European ancestry controls, 10,587 South Asian ancestry cases, 14,378 South Asian ancestry controls, 3,848 Mexican/Latino cases, 4,366 Mexican/Latino controls	9q34.3	GPSM1	rs28642252-G	NR	1E-8	(Japanese)	1.15867	[1.10166-1.21864]	Illumina [7521072] (imputed)	N
1647	chr9	139245459	139245460	rs28378473	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	9q34.3		rs28378473-C	NR	7E-42		0.0328	[0.028-0.038] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
1647	chr9	139246587	139246588	rs376993806	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 2,680 cases, 380,970 European ancestry controls, 73,242 controls	NA	9q34.3	GPSM1	rs376993806-G	0.716864	2E-8		1.07	[1.05-1.10]	NR [10903881] (imputed)	N
1647	chr9	139246587	139246588	rs376993806	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	9q34.3	GPSM1	rs376993806-G	0.882	5E-26		1.14	[1.11-1.17]	Affymetrix, Illumina [11800000] (imputed)	N
1647	chr9	139246587	139246588	rs376993806	31118516	Flannick J	2019-05-22	Nature	Exome sequencing of 20,791 cases of type 2 diabetes and 24,440 controls.	Type 2 diabetes	2,277 African American cases, 3,098 East Asian ancestry cases, 3,704 European ancestry cases, 6,215 Hispanic/Latino cases, 2,939 South Asian ancestry cases, 2,283 African American controls, 2,921 East Asian ancestry controls, 3,514 European ancestry controls, 5,939 Hispanic/Latino controls, 3,022 South Asian ancestry controls	NA	9q34.3	GPSM1	rs376993806-G	0.26	2E-8		1.1299435	NR	Affymetrix, Illumina [up to 35256845] (imputed)	N
1647	chr9	139246767	139246768	rs61386106	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	20,917 European ancestry cases, 440,906 European ancestry controls, 14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	9q34.3		rs61386106-A	NR	3E-8		0.0871	[0.056-0.118] unit increase	Affymetrix, Illumina [25841367] (imputed)	N
1647	chr9	139248081	139248082	rs28642213	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	9q34.3		rs28642213-G	NR	4E-37		0.1006	[0.085-0.116] unit increase	Affymetrix, Illumina [25845091] (imputed)	N
1647	chr9	139248081	139248082	rs28642213	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	9q34.3	NR	rs28642213-G	0.7572	6E-68		0.0822	[0.073-0.091] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1647	chr9	139251944	139251945	rs7853207	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	9q34.3	NR	rs7853207-T	0.491814	5E-14		0.014906	[0.011-0.019] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
1647	chr9	139252147	139252148	rs11787792	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	9q34.3	GPSM1	rs11787792-A	0.673	2E-12		0.108	[0.079-0.137] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1647	chr9	139252147	139252148	rs11787792	23945395	Hara K	2013-08-14	Hum Mol Genet	Genome-wide association study identifies three novel loci for type 2 diabetes.	Type 2 diabetes	5,976 Japanese ancestry cases, 20,829 Japanese ancestry controls	24,416 East Asian ancestry cases, 13,985 East Asian ancestry controls	9q34.3	GPSM1	rs11787792-A	0.874	2E-10		1.15	[1.10-1.20]	Illumina [6209637] (imputed)	N
1647	chr9	139253838	139253839	rs1128905	23749187	Cortes A	2013-07-01	Nat Genet	Identification of multiple risk variants for ankylosing spondylitis through high-density genotyping of immune-related loci.	Ankylosing spondylitis	9,069 European ancestry cases, 1,550 East Asian ancestry cases, 13,578 European ancestry controls, 1,567 East Asian ancestry controls	NA	9q34.3	CARD9	rs1128905-C	0.503	7E-9		1.1		Illumina [128935]	N
1647	chr9	139253838	139253839	rs1128905	23749187	Cortes A	2013-07-01	Nat Genet	Identification of multiple risk variants for ankylosing spondylitis through high-density genotyping of immune-related loci.	Ankylosing spondylitis	9,069 European ancestry cases, 1,550 East Asian ancestry cases, 13,578 European ancestry controls, 1,567 East Asian ancestry controls	NA	9q34.3	CARD9	rs1128905-C	0.503	2E-9	(EA)	1.12		Illumina [128935]	N
1647	chr9	139256765	139256766	rs3829109	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	9q34.3	DNLZ	rs3829109-A	0.2954	3E-8		0.0086	[0.0057-0.0115] unit decrease	Affymetrix, Illumina [33811881] (imputed)	N
1647	chr9	139256765	139256766	rs3829109	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	200,622 European ancestry individuals	NA	9q34.3	DNLZ	rs3829109-A	0.3019	1E-15		0.0163	[0.012-0.02] unit decrease	Affymetrix, Illumina [34064007] (imputed)	N
1647	chr9	139256765	139256766	rs3829109	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	9q34.3	DNLZ, CARD9	rs3829109-A	NR	1E-9		0.0192906	[0.013-0.026] unit increase	Affymetrix [321016] (imputed)	N
1647	chr9	139256765	139256766	rs3829109	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting glucose	67,506 European ancestry men	NA	9q34.3	DNLZ	rs3829109-G	0.690678	5E-6		0.017136	[0.0098-0.0245] unit increase	Affymetrix, Illumina [8700000] (imputed)	N
1647	chr9	139256765	139256766	rs3829109	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting glucose	151,188 European ancestry individuals	NA	9q34.3	DNLZ	rs3829109-G	0.690678	6E-9		0.015269	[0.01-0.02] unit increase	Affymetrix, Illumina [8700000] (imputed)	N
1647	chr9	139256765	139256766	rs3829109	28490609	Wood AR	2017-05-10	Diabetes	A Genome-Wide Association Study of IVGTT-Based Measures of First-Phase Insulin Secretion Refines the Underlying Physiology of Type 2 Diabetes Variants.	Peak insulin response (insulin secretion adjusted)	2,337 Hispanic individuals, 2,159 European ancestry individuals, 332 Pima Indian ancestry individuals	739 European ancestry individuals	9q34.3	DNLZ	rs3829109-?	NR	3E-6		0.103	[0.060-0.146] pmol/l increase	Affymetrix, Illumina [~ 39000000] (imputed)	N
1647	chr9	139257146	139257147	rs10870201	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	9q34.3	DNLZ, CARD9	rs10870201-C	NR	8E-10		0.0173889	[0.012-0.023] unit increase	Affymetrix [321016] (imputed)	N
1647	chr9	139257410	139257411	rs10870202	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FVC)	48,943 European ancestry individuals.	57,176 European ancestry individuals, 38,199 individuals.	9q34.3	DNLZ	rs10870202-C	0.5001	9E-10	(conditioned on rs10858246)	0.024	[0.016-0.032] unit decrease	Affymetrix [27624732] (imputed)	N
1647	chr9	139258461	139258462	rs1135314	28490609	Wood AR	2017-05-10	Diabetes	A Genome-Wide Association Study of IVGTT-Based Measures of First-Phase Insulin Secretion Refines the Underlying Physiology of Type 2 Diabetes Variants.	Acute insulin response (insulin secretion adjusted)	2,346 Hispanic individuals, 2,087 European ancestry individuals, 332 Pima Indian ancestry individuals	741 European ancestry individuals	9q34.3	GPSM1, DNLZ1, CARD9	rs1135314-A	0.597	4E-8		0.126	[0.081-0.171] unit decrease	Affymetrix, Illumina [~ 39000000] (imputed)	N
1647	chr9	139259348	139259349	rs4073153	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	9q34.3	DNLZ	rs4073153-A	0.5613	9E-9		0.0138	[0.0091-0.0185] unit increase	Affymetrix [19819130] (imputed)	N
1647	chr9	139259348	139259349	rs4073153	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	9q34.3	DNLZ	rs4073153-A	0.5613	4E-7		0.0122	[0.0075-0.0169] unit increase	Affymetrix [19819130] (imputed)	N
1647	chr9	139259591	139259592	rs141992399	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	C-reactive protein levels	436,939 European ancestry individuals	NA	9q34.3		rs141992399-?	NR	2E-9		0.0980371	[0.068-0.128] unit decrease	NR [9800000] (imputed)	N
1647	chr9	139259591	139259592	rs141992399	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	9q34.3	CARD9	rs141992399-?	NR	1E-31	(subset analysis)			Illumina [130052]	N
1647	chr9	139262571	139262572	rs138040332	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Kidney cancer	1,338 European ancestry cases, 410,350 European ancestry controls	NA	9q34.3		rs138040332-T	0.012757	1E-7		2.0981956	NR	Affymetrix [7846216] (imputed)	N
1647	chr9	139262611	139262612	rs72775750	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9q34.3	NR	rs72775750-A	0.01916	2E-8	(AMBP)	0.0301	NR unit increase	Illumina [1671387] (imputed)	N
1647	chr9	139263595	139263596	rs11145763	26301688	Li YR	2015-08-24	Nat Med	Meta-analysis of shared genetic architecture across ten pediatric autoimmune diseases.	Pediatric autoimmune diseases	97 European ancestry thyroiditis cases, 107 European ancestry ankylosing spondylitis cases, 100 European ancestry psoriasis cases, 173 European ancestry celiac disease cases, 254 European ancestry systemic lupus erythematosus cases, 308 European ancestry common variable inmunodeficiency cases, 865 European ancestry ulcerative colitis cases, 1,086 European ancestry Type 1 diabetes cases, 1,123  European ancestry juvenile idiopathic arthritis cases, 1,922  European ancestry Crohn's disease cases, 10,718 European ancestry controls	NA	9q34.3	CARD9	rs11145763-C	0.4	3E-8				Illumina [7347414] (imputed)	N
1647	chr9	139263890	139263891	rs10870077	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	9q34.3	CARD9	rs10870077-?	NR	6E-45	(subset analysis)			Illumina [130052]	N
1647	chr9	139264887	139264888	rs114895119	28265093	Malik R	2017-03-06	Proc Natl Acad Sci U S A	Common coding variant in SERPINA1 increases the risk for large artery stroke.	Large artery stroke	up to 2,286 European ancestry cases, up to 376 South Asian cases, up to 8,884 European ancestry controls, up to 978 South Asian controls	NA	9q34.3	CARD9	rs114895119-A	0.003	4E-6		1.84	[1.41-2.40]	Illumina [92772]	N
1647	chr9	139265087	139265088	rs59902911	26498133	Arya R	2015-08-26	Genet Epidemiol	Genetic Variants Influencing Joint Damage in Mexican Americans and European Americans With Rheumatoid Arthritis.	Joint damage in rheumatoid arthritis	666 Mexican ancestry cases, 407 European ancestry cases	NA	9q34.3	CARD9, GPSM1, DNLZ, SNAPC4, SDCCAG3, PMPCA, INPP5E	rs59902911-T	0.0356	1E-6	(EA)	0.8589	[0.52-1.20] unit increase	Illumina [at least 127563] (imputed)	N
1647	chr9	139265595	139265596	rs34971035	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	9q34.3	CARD9	rs34971035-A	0.064	5E-6	(MCP1 )	0.04	[NR] pg/mL increase	Illumina [899892]	N
1647	chr9	139265595	139265596	rs34971035	23017229	Voruganti VS	2012-09-24	Cytokine	Genome-wide association replicates the association of Duffy antigen receptor for chemokines (DARC) polymorphisms with serum monocyte chemoattractant protein-1 (MCP-1) levels in Hispanic children.	Monocyte chemoattractant protein-1 levels	815 Hispanic children	NA	9q34.3	CARD9	rs34971035-?	NR	5E-8				Illumina [NR]	N
1647	chr9	139266404	139266405	rs10781499	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Ulcerative colitis	12,366 European and unknown ancestry cases, 33,609 European and unknown ancestry controls	NA	9q34.3	C9orf69, LHX3, DKFZP434A062, DNLZ, UBAC1, QSOX2, GPSM1, CARD9, SNAPC4, SDCCAG3, PMPCA, SEC16A, C9orf163, NOTCH1, NACC2, INPP5E	rs10781499-?		2E-16				Illumina [9578670] (imputed)	N
1647	chr9	139266404	139266405	rs10781499	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	9q34.3	C9orf69, LHX3, DKFZP434A062, DNLZ, UBAC1, QSOX2, GPSM1, CARD9, SNAPC4, SDCCAG3, PMPCA, SEC16A, C9orf163, NOTCH1, NACC2, INPP5E	rs10781499-?		5E-36				Illumina [9725440] (imputed)	N
1647	chr9	139266404	139266405	rs10781499	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	9q34.3	C9orf69, LHX3, DKFZP434A062, DNLZ, UBAC1, QSOX2, GPSM1, CARD9, SNAPC4, SDCCAG3, PMPCA, SEC16A, C9orf163, NOTCH1, NACC2, INPP5E	rs10781499-?		6E-30				Illumina [9560910] (imputed)	N
1647	chr9	139266404	139266405	rs10781499	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	9q34.3	NR	rs10781499-A	0.4263	4E-26	(EA)	1.142511	[1.12-1.17]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1647	chr9	139266404	139266405	rs10781499	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	9q34.3	NR	rs10781499-A	0.4263	8E-43	(EA)	1.181867	[1.16-1.21]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1647	chr9	139266404	139266405	rs10781499	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	9q34.3	INPP5E, SDCCAG3, CARD9, PMPCA	rs10781499-A	0.412	4E-56		1.188	[1.154-1.222]	Affymetrix, Illumina [1230000] (imputed)	N
1647	chr9	139266404	139266405	rs10781499	21297633	Anderson CA	2011-02-06	Nat Genet	Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47.	Ulcerative colitis	6,687 European ancestry cases, 19,718 European ancestry controls	9,628 European ancestry cases, 12,917 European ancestry controls	9q34.3	INPP5E, SDCCAG3, SEC16A, CARD9, SNAPC4	rs10781499-A	0.41	3E-19		1.12	[1.08-1.17]	Affymetrix, Illumina [~ 1100000] (imputed)	N
1647	chr9	139266495	139266496	rs4077515	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	9q34.3	NR	rs4077515-?	NR	1E-53	(EA)			Affymetrix, Illumina [~ 9000000] (imputed)	N
1647	chr9	139266495	139266496	rs4077515	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	9q34.3	CARD9	rs4077515-T	0.4	2E-8	(EA)	1.18	[NR]	Illumina [> 1000000] (imputed)	N
1647	chr9	139266495	139266496	rs4077515	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	9q34.3	CARD9	rs4077515-T	0.4	1E-9		1.16	[NR]	Illumina [> 1000000] (imputed)	N
1647	chr9	139266495	139266496	rs4077515	22936669	Julia A	2012-08-30	Gut	A genome-wide association study on a southern European population identifies a new Crohn's disease susceptibility locus at RBX1-EP300.	Crohn's disease	1,277 European ancestry cases, 1,488 European ancestry controls	1,365 European ancestry cases, 1,396 European ancestry controls	9q34.3	CARD9, SNAPC4	rs4077515-T	NR	4E-6		1.29	[NR]	Illumina [508934]	N
1647	chr9	139266495	139266496	rs4077515	21102463	Franke A	2010-11-21	Nat Genet	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry trios	9q34.3	CARD9, SNAPC4	rs4077515-T	0.411	1E-36		1.18	[1.13-1.22]	Affymetrix, Illumina [953241] (imputed)	N
1647	chr9	139266495	139266496	rs4077515	20228799	McGovern DP	2010-03-14	Nat Genet	Genome-wide association identifies multiple ulcerative colitis susceptibility loci.	Ulcerative colitis	2,693 European ancestry cases, 6,791 European ancestry controls	2,009 European ancestry cases, 1,580 European ancestry controls	9q34.3	CARD9	rs4077515-A	NR	5E-8		1.22	[NR]	Illumina [266047]	N
1647	chr9	139267292	139267293	rs4078098	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	9q34.3	SNAPC4	rs4078098-?	NR	7E-6	(TAG 52:3)	0.89225197	[0.5-1.28] unit increase	Affymetrix [at least 2500000] (imputed)	N
1647	chr9	139269337	139269338	rs10781500	21743469	Evans DM	2011-07-10	Nat Genet	Interaction between ERAP1 and HLA-B27 in ankylosing spondylitis implicates peptide handling in the mechanism for HLA-B27 in disease susceptibility.	Ankylosing spondylitis	3,023 European ancestry cases, 8,779 European ancestry controls	2,111 European ancestry cases, 4,483 European ancestry controls	9q34.3	CARD9	rs10781500-T	0.42	1E-6				Illumina [2223620] (imputed)	N
1647	chr9	139269337	139269338	rs10781500	19915572	Barrett JC	2009-11-15	Nat Genet	Genome-wide association study of ulcerative colitis identifies three new susceptibility loci, including the HNF4A region.	Ulcerative colitis	2,361 European ancestry cases, 5,417 European ancestry controls	2,321 European ancestry cases, 4,818 European ancestry controls	9q34.3	CARD9	rs10781500-?	NR	7E-6				Affymetrix [NR]	N
1647	chr9	139269904	139269905	rs3812560	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	683 Turkish ancestry cases, 1,721 Turkish ancestry controls	NA	9q34.3	CARD9, SNAPC4	rs3812560-C	0.3196	2E-6		1.374	[1.204-1.567]	Illumina [4495750] (imputed)	N
1647	chr9	139271746	139271747	rs11794847	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	9q34.3		rs11794847-?	NR	9E-11				NR [~ 8900000] (imputed)	N
1647	chr9	139272501	139272502	rs3812565	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Ulcerative colitis vs rheumatoid arthritis (ordinary least squares (OLS))	6,968 ulcerative colitis cases, 8,875 rheumatoid arthritis cases	10,679 ulcerative colitis cases, 5,486 rheumatoid arthritis cases	9q34.3		rs3812565-?	NR	2E-9		0.052	NR unit increase	NR [5896510] (imputed)	N
1647	chr9	139272501	139272502	rs3812565	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	9q34.3	SNAPC4	rs3812565-C	0.39667	5E-19		0.02016725	[0.016-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1647	chr9	139272501	139272502	rs3812565	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	9q34.3	SNAPC4	rs3812565-C	0.396666	2E-15		0.018031264	[0.014-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1647	chr9	139272501	139272502	rs3812565	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	9q34.3	SNAPC4	rs3812565-C	0.3962	4E-13		0.02640646	[0.019-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
1647	chr9	139275203	139275204	rs3812570	25524916	Palmer ND	2014-12-18	Diabetes	Genetic Variants Associated With Quantitative Glucose Homeostasis Traits Translate to Type 2 Diabetes in Mexican Americans: The GUARDIAN (Genetics Underlying Diabetes in Hispanics) Consortium.	Glucose homeostasis traits	up to 4,176 Mexican American individuals	NA	9q34.3	SNAPC4	rs3812570-?		2E-6	(DI)	1.87	[0.85-2.89] unit decrease	Illumina [693128]	N
1647	chr9	139289824	139289825	rs4266763	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Crohn's disease vs rheumatoid arthritis (ordinary least squares (OLS))	5,956 Crohn's disease cases, 8,875 rheumatoid arthritis cases	14,594 Crohn's disease cases, 5,486 rheumatoid arthritis cases	9q34.3		rs4266763-?	NR	1E-13		0.062	NR unit increase	NR [5890016] (imputed)	N
1647	chr9	139289824	139289825	rs4266763	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	9q34.3	NR	rs4266763-A	0.573191	5E-19		0.018751	[0.015-0.023] unit decrease	NR [NR]	N
1647	chr9	139294246	139294247	rs4330804	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	9q34.3		rs4330804-G	NR	1E-13		0.0179	[0.013-0.023] unit increase	Affymetrix, Illumina [20529698] (imputed)	N
1647	chr9	139298592	139298593	rs1051957	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	9q34.3	SDCCAG3	rs1051957-G	NR	5E-9		0.0166087	[0.011-0.022] unit increase	Affymetrix [321016] (imputed)	N
1647	chr9	139298592	139298593	rs1051957	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	286 European ancestry cases, 2,652 European ancestry controls, 76 Han Chinese ancestry cases, 889 Han Chinese ancestry controls, 46 South Asian ancestry cases, 501 South Asian ancestry controls, 683 Turkish ancestry cases, 1,721 Turkish ancestry controls	NA	9q34.3	CARD9/SNAPC4	rs1051957-G	NR	9E-7		1.2998	NR	Illumina [up to 4495750] (imputed)	N
1647	chr9	139300875	139300876	rs11145912	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	133,336 East Asian ancestry individuals	NA	9q34.3		rs11145912-A	0.241991	6E-14		0.0302201	[0.022-0.038] unit decrease	Illumina [13476509] (imputed)	N
1647	chr9	139303289	139303290	rs4298601	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q34.3	NR	rs4298601-G	0.699487	1E-12				Affymetrix, Illumina [22063850] (imputed)	N
1647	chr9	139303289	139303290	rs4298601	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	9q34.3		rs4298601-?	NR	3E-12				NR [~ 8900000] (imputed)	N
1647	chr9	139305006	139305007	rs4400498	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	9q34.3	SDCCAG3	rs4400498-T	NR	4E-8		0.0172735	[0.011-0.023] unit increase	Affymetrix [321016] (imputed)	N
1647	chr9	139310186	139310187	rs12380242	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	9q34.3	PMPCA	rs12380242-C	0.4942	8E-10		1.0208136		Affymetrix [11880941] (imputed)	N
1647	chr9	139316743	139316744	rs11145974	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	9q34.3		rs11145974-?	NR	3E-25				NR [~ 8900000] (imputed)	N
1647	chr9	139317868	139317869	rs1130635	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	9q34.3		rs1130635-C	NR	2E-8		0.0124	[0.0081-0.0167] unit decrease	Affymetrix, Illumina [20536134] (imputed)	N
1647	chr9	139317978	139317979	rs1130640	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	9q34.3		rs1130640-C	0.745568	2E-8		0.0261141	[0.017-0.035] unit increase	NR [11722792] (imputed)	N
1647	chr9	139319128	139319129	rs10747044	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	9q34.3		rs10747044-G	0.715	3E-9		0.0266164	[0.018-0.035] unit increase	NR [11722792] (imputed)	N
1647	chr9	139319846	139319847	rs11145986	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	9q34.3		rs11145986-G	NR	3E-19		0.021	[0.016-0.026] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
1647	chr9	139320068	139320069	rs10448340	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	9q34.3		rs10448340-G	NR	4E-10		0.0145	[0.01-0.019] unit decrease	Affymetrix, Illumina [20521447] (imputed)	N
1647	chr9	139320068	139320069	rs10448340	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	9q34.3	NR	rs10448340-T	0.679777	6E-16		0.0166194	[0.013-0.021] unit increase	Affymetrix [15000001]	N
1647	chr9	139320068	139320069	rs10448340	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	9q34.3	PMPCA	rs10448340-T	0.680234	1E-11		0.0151234	[0.011-0.02] unit increase	Affymetrix [NR] (imputed)	N
1647	chr9	139320068	139320069	rs10448340	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	9q34.3	PMPCA	rs10448340-T	0.680233	2E-14		0.0171608	[0.013-0.022] unit increase	Affymetrix [NR] (imputed)	N
1647	chr9	139320068	139320069	rs10448340	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	9q34.3		rs10448340-T	0.6806	9E-9		0.013	[0.0091-0.0169] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
1647	chr9	139320323	139320325	rs142483589	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	9q34.3	PMPCA, INPP5E	rs142483589-C	0.2893	9E-16		0.03178013	[0.024-0.04] unit increase	Affymetrix [~ 2500000] (imputed)	N
1647	chr9	139321085	139321086	rs10747045	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	9q34.3		rs10747045-T	0.660789	2E-8		0.0244732	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
1647	chr9	139321085	139321086	rs10747045	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	9q34.3		rs10747045-T	0.660789	3E-8		0.0231444	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
1647	chr9	139321085	139321086	rs10747045	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	9q34.3		rs10747045-T	0.660789	4E-9		0.0242213	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
1647	chr9	139321086	139321087	rs10747046	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	9q34.3		rs10747046-A	0.660754	2E-9		0.0247474	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
1647	chr9	139321086	139321087	rs10747046	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	9q34.3		rs10747046-A	0.660754	7E-9		0.024389	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
1647	chr9	139321086	139321087	rs10747046	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	9q34.3		rs10747046-A	0.660754	9E-9		0.0239335	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
1647	chr9	139321086	139321087	rs10747046	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	9q34.3		rs10747046-A	0.660754	9E-10		0.0266722	[0.018-0.035] unit increase	NR [11722792] (imputed)	N
1647	chr9	139321086	139321087	rs10747046	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	9q34.3		rs10747046-A	0.660754	4E-9		0.0243226	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
1647	chr9	139321835	139321836	rs10781540	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum total protein level	113,509 Japanese ancestry individuals	NA	9q34.3	PMPCA, INPP5E	rs10781540-?	NR	2E-8		0.02735	[0.018-0.037] unit decrease novel	Illumina [6108953] (imputed)	N
1647	chr9	139322256	139322257	rs71191701	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	9q34.3	INPP5E, PMPCA	rs71191701-C	0.2916	3E-17		0.03314689	[0.025-0.041] unit increase	Affymetrix [~ 2500000] (imputed)	N
1647	chr9	139322256	139322257	rs71191701	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	9q34.3	INPP5E, PMPCA	rs71191701-C	0.2916	6E-16		0.03183651	[0.024-0.04] unit increase	Affymetrix [~ 2500000] (imputed)	N
1647	chr9	139322256	139322257	rs71191701	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	9q34.3	INPP5E, PMPCA	rs71191701-C	0.2916	6E-16		0.03178815	[0.024-0.039] unit increase	Affymetrix [~ 2500000] (imputed)	N
1647	chr9	139322256	139322257	rs71191701	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	9q34.3	INPP5E, PMPCA	rs71191701-C	0.2915	5E-16		0.03198902	[0.024-0.04] unit increase	Affymetrix [~ 2500000] (imputed)	N
1647	chr9	139322256	139322257	rs71191701	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	9q34.3	INPP5E, PMPCA	rs71191701-C	0.2916	3E-17		0.03321731	[0.025-0.041] unit increase	Affymetrix [~ 2500000] (imputed)	N
1647	chr9	139322444	139322444	rs34297856	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	9q34.3		rs34297856-C	0.713976	1E-11		0.0299057	[0.021-0.039] unit decrease	NR [11722792] (imputed)	N
1647	chr9	139322444	139322444	rs34297856	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	9q34.3	INPP5E	rs34297856-CTA	NR	4E-14		0.0235508	[0.017-0.03] unit increase	Affymetrix [321016] (imputed)	N
1647	chr9	139322444	139322444	rs34297856	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	9q34.3	MIR4673	rs34297856-?	NR	2E-9		0.0169	[0.012-0.022] unit decrease	Affymetrix [5701386] (imputed)	N
1647	chr9	139323310	139323311	rs8413	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	9q34.3	INPP5E	rs8413-C	NR	5E-13		0.0204708	[0.015-0.026] unit increase	Affymetrix [321016] (imputed)	N
1647	chr9	139323423	139323424	rs1128874	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	133,321 East Asian ancestry individuals	NA	9q34.3		rs1128874-C	0.23725	2E-9		0.0266662	[0.018-0.035] unit decrease	Illumina [13477433] (imputed)	N
1647	chr9	139326252	139326253	rs11146014	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	9q34.3	INPP5E	rs11146014-C	0.340991	3E-13		0.017207583	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1647	chr9	139327061	139327062	rs34936112	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	9q34.3		rs34936112-A	NR	3E-26		0.0257	[0.021-0.03] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
1647	chr9	139327142	139327143	rs35531907	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	9q34.3		rs35531907-T	0.26	1E-16		8.27	z score increase	Affymetrix [9061022] (imputed)	N
1647	chr9	139327276	139327277	rs34619169	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	9q34.3		rs34619169-A	NR	4E-32		0.0274	[0.023-0.032] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
1647	chr9	139327276	139327277	rs34619169	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	9q34.3		rs34619169-?	NR	8E-9				NR [~ 8900000] (imputed)	N
1647	chr9	139327598	139327599	rs73566945	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	9q34.3	INPP5E	rs73566945-G	0.784702	3E-28		0.00324149	[0.0026-0.0038] unit decrease	Affymetrix [13995440] (imputed)	N
1647	chr9	139327857	139327858	rs11146021	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	9q34.3		rs11146021-A	0.26	2E-9		6.01	z score increase	Affymetrix [9061022] (imputed)	N
1647	chr9	139327857	139327858	rs11146021	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	9q34.3	NR	rs11146021-A	0.2884	2E-15				NR [9056863] (imputed)	N
1647	chr9	139327857	139327858	rs11146021	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	9q34.3	NR	rs11146021-A	0.2884	7E-10				NR [9056863] (imputed)	N
1647	chr9	139327857	139327858	rs11146021	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	9q34.3	INPP5E	rs11146021-A	0.286264	8E-35		0.030037234	[0.025-0.035] unit increase	Affymetrix [93095623] (imputed)	N
1647	chr9	139328368	139328369	rs10781543	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	9q34.3	INPP5E	rs10781543-C	0.4292	7E-11		0.0234422	[0.016-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1647	chr9	139328721	139328722	rs7851507	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Hemoglobin A1c levels	42,790 Japanese ancestry individuals	NA	9q34.3	INPP5E	rs7851507-?	NR	8E-11		0.05127	[0.036-0.067] unit decrease novel	Illumina [6108953] (imputed)	N
1648	chr9	139330157	139330158	rs4413892	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	9q34.3	INPP5E	rs4413892-A	0.285927	8E-41		0.03273019	[0.028-0.038] unit increase	Affymetrix [93095623] (imputed)	N
1648	chr9	139330157	139330158	rs4413892	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q34.3	NR	rs4413892-A	0.23589	2E-45				Affymetrix, Illumina [24649327] (imputed)	N
1648	chr9	139330157	139330158	rs4413892	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	9q34.3	NR	rs4413892-A	0.276136	3E-46		0.031056	[0.027-0.035] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
1648	chr9	139330157	139330158	rs4413892	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	9q34.3	NR	rs4413892-A	0.277885	2E-51		0.033654	[0.029-0.038] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
1648	chr9	139331220	139331221	rs3923776	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	9q34.3		rs3923776-C	0.27	6E-13		7.19	z score increase	Affymetrix [9061022] (imputed)	N
1648	chr9	139331220	139331221	rs3923776	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q34.3	NR	rs3923776-C	0.254004	9E-51				Affymetrix, Illumina [23114412] (imputed)	N
1648	chr9	139335598	139335599	rs1127152	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q34.3	NR	rs1127152-G	0.40177	2E-10				Affymetrix, Illumina [20825802] (imputed)	N
1648	chr9	139335598	139335599	rs1127152	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	9q34.3	NR	rs1127152-G	0.444744	1E-10		0.012455	[0.0087-0.0163] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
1648	chr9	139335598	139335599	rs1127152	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	9q34.3		rs1127152-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1648	chr9	139337682	139337682	rs60657979	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	9q34.3	SEC16A	rs60657979-G	0.5518	2E-6		0.0337	[0.02-0.047] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1648	chr9	139340801	139340802	rs13301660	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Squamous cell carcinoma	9,674 European ancestry cases, 625,657 European ancestry controls	NA	9q34.3	SEC16A	rs13301660-T	0.263751	2E-10		1.11	[1.08-1.14]	Affymetrix, Illumina [up to 9061544] (imputed)	N
1648	chr9	139340801	139340802	rs13301660	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Basal cell carcinoma	31,787 European ancestry cases, 619,351 European ancestry controls	NA	9q34.3	SEC16A	rs13301660-T	NR	4E-6		1.04	[1.03-1.06]	Affymetrix, Illumina [up to 9061544] (imputed)	N
1648	chr9	139341611	139341612	rs3812591	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	9q34.3	SEC16A	rs3812591-C	0.274514	2E-27		0.02680425	[0.022-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
1648	chr9	139354096	139354097	rs35857370	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	9q34.3		rs35857370-A	NR	2E-23		0.0252	[0.02-0.03] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
1648	chr9	139356986	139356987	rs57994353	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	9q34.3		rs57994353-T	0.699174	2E-9		0.0262315	[0.018-0.035] unit decrease	NR [11722792] (imputed)	N
1648	chr9	139356986	139356987	rs57994353	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	9q34.3		rs57994353-T	0.699151	3E-10		0.0273784	[0.019-0.036] unit decrease	NR [11722792] (imputed)	N
1648	chr9	139356986	139356987	rs57994353	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	9q34.3		rs57994353-T	0.699174	9E-11		0.0279386	[0.02-0.036] unit increase	NR [11722792] (imputed)	N
1648	chr9	139356986	139356987	rs57994353	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	9q34.3		rs57994353-T	0.699144	1E-8		0.0246411	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
1648	chr9	139356986	139356987	rs57994353	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	9q34.3		rs57994353-T	0.699174	4E-10		0.0270012	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
1648	chr9	139356986	139356987	rs57994353	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	9q34.3		rs57994353-T	0.699151	1E-11		0.0295397	[0.021-0.038] unit increase	NR [11722792] (imputed)	N
1648	chr9	139356986	139356987	rs57994353	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	9q34.3		rs57994353-T	0.699144	7E-10		0.0271226	[0.019-0.036] unit increase	NR [11722792] (imputed)	N
1648	chr9	139356986	139356987	rs57994353	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	9q34.3		rs57994353-C	NR	1E-9		0.0143	[0.0098-0.0188] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
1648	chr9	139356986	139356987	rs57994353	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	9q34.3	SEC16A	rs57994353-?	NR	2E-9		0.0173	[0.012-0.022] unit increase	Affymetrix [5701386] (imputed)	N
1648	chr9	139356986	139356987	rs57994353	32041948	Sarin KY	2020-02-10	Nat Commun	Genome-wide meta-analysis identifies eight new susceptibility loci for cutaneous squamous cell carcinoma.	Cutaneous squamous cell carcinoma	19,149 European ancestry cases, 680,049 European ancestry controls	NA	9q34.3	SEC16A	rs57994353-C	0.284	2E-11		0.09	[0.07-0.11] unit increase	NR [13607369] (imputed)	N
1648	chr9	139356986	139356987	rs57994353	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	9q34.3	SEC16A	rs57994353-C	0.2994	3E-9		0.02311792	[0.016-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
1648	chr9	139356986	139356987	rs57994353	27424798	Chahal HS	2016-07-18	Nat Commun	Genome-wide association study identifies novel susceptibility loci for cutaneous squamous cell carcinoma.	Cutaneous squamous cell carcinoma	6,579 European ancestry cases, 280,558 European ancestry controls	825 European ancestry cases, 11,518 European ancestry controls	9q34.3	SEC16A	rs57994353-C	0.3	8E-9		1.12		Affymetrix, Illumina [at least 560000] (imputed)	N
1648	chr9	139359827	139359828	rs12346977	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		SEC16A	rs12346977-?	NR	7E-12		2.27367	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1648	chr9	139368952	139368953	rs3812594	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	Low density lipoprotein cholesterol levels	up to 237,050 European ancestry individuals, up to 16,935 African ancestry individuals, up to 30,468 South Asian ancestry individuals, up to 8,287 East Asian ancestry individuals, 5,084 Hispanic individuals	up to 286,268 European and unknown ancestry individuals	9q34.3	NR	rs3812594-A	NR	1E-12		0.015316863	[0.011-0.02] unit increase	Illumina [242289]	N
1648	chr9	139368952	139368953	rs3812594	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	Low density lipoprotein cholesterol levels	up to 237,050 European ancestry individuals	NA	9q34.3	NR	rs3812594-A	0.27	6E-6		0.016	unit decrease	Illumina [242289]	N
1648	chr9	139369061	139369062	rs3812595	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	9q34.3		rs3812595-C	0.736371	5E-11		0.0294084	[0.021-0.038] unit increase	NR [11722792] (imputed)	N
1648	chr9	139369061	139369062	rs3812595	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	9q34.3		rs3812595-C	0.736379	1E-13		0.0331504	[0.024-0.042] unit increase	NR [11722792] (imputed)	N
1648	chr9	139374456	139374457	rs34602454	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	9q34.3	NR	rs34602454-C	0.245711	3E-20				Affymetrix, Illumina [19872809] (imputed)	N
1648	chr9	139377497	139377498	rs7020201	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	9q34.3	C9orf163	rs7020201-C	0.543	3E-11		0.0117	[0.0082-0.0152] unit increase	Affymetrix [18391927] (imputed)	N
1648	chr9	139381127	139381128	rs72775778	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9q34.3		rs72775778-?	NR	2E-36				NR [~ 8900000] (imputed)	N
1648	chr9	139385098	139385099	rs35135227	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	9q34.3	SEC16A, NOTCH1	rs35135227-T	0.28	4E-19		8.94	z-score increase	Affymetrix [4311822] (imputed)	N
1648	chr9	139386137	139386138	rs4382584	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	9q34.3	NOTCH1	rs4382584-G	0.725664	6E-9		0.0130445	[0.0087-0.0174] unit decrease	Affymetrix [NR] (imputed)	N
1648	chr9	139386639	139386640	rs13295248	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	9q34.3		rs13295248-?	NR	1E-19				NR [~ 8900000] (imputed)	N
1648	chr9	139387675	139387676	rs12555241	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	9q34.3		rs12555241-A	NR	4E-10		0.0119	[0.0082-0.0156] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
1648	chr9	139387675	139387676	rs12555241	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	9q34.3	NOTCH1	rs12555241-A	0.277922	2E-21		0.023584679	[0.019-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1648	chr9	139389431	139389432	rs3124998	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	9q34.3	NOTCH1	rs3124998-?	NR	9E-9	(subset analysis)			Illumina [130052]	N
1648	chr9	139393161	139393162	rs3124592	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	9q34.3	NOTCH1	rs3124592-A	NR	6E-9		0.0233705	[0.015-0.031] unit decrease	Affymetrix [16832071] (imputed)	N
1648	chr9	139393161	139393162	rs3124592	26732621	Ruth KS	2016-01-04	Hum Reprod	Genetic evidence that lower circulating FSH levels lengthen menstrual cycle, increase age at menopause and impact female reproductive health.	Length of menstrual cycle	9,534 European ancestry individuals	NA	9q34.3	NOTCH1	rs3124592-G	0.45	2E-8		0.08	[0.05-0.11] SD increase	NR [~ 16800000] (imputed)	N
1648	chr9	139395258	139395259	rs2229973	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	9q34.3	NOTCH1	rs2229973-?	NR	5E-6		0.308	[0.18-0.44] unit increase	Illumina [at least 13000000] (imputed)	N
1648	chr9	139396407	139396408	rs3124594	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	9q34.3	NOTCH1	rs3124594-G	0.482143	7E-9		0.012851866	[0.0085-0.0172] unit increase	Affymetrix [93095623] (imputed)	N
1648	chr9	139399640	139399641	rs13300218	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	9q34.3	NR	rs13300218-G	0.9	2E-10	(EA)	1.1441684		Affymetrix, Illumina [~ 9000000] (imputed)	N
1648	chr9	139399640	139399641	rs13300218	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	9q34.3	NR	rs13300218-G	0.9	7E-20	(EA)	1.1674234		Affymetrix, Illumina [~ 9000000] (imputed)	N
1648	chr9	139399640	139399641	rs13300218	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	9q34.3	NR	rs13300218-G	0.9	7E-16	(EA)	1.1831077	[1.14-1.22]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1648	chr9	139401503	139401504	rs3124596	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	9q34.3		rs3124596-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1648	chr9	139409088	139409089	rs79782048	33637690	He L	2021-02-26	Transl Psychiatry	Exome-wide age-of-onset analysis reveals exonic variants in ERN1 and SPPL2C associated with Alzheimer's disease.	Alzheimer's disease (age of onset) in APOE e4 non-carriers	7,185 European ancestry individuals	5,416 European ancestry individuals	9q34.3		rs79782048-?	NR	7E-8		4.39		NR [98334]	N
1648	chr9	139443955	139443956	rs710411	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Sucrose liking	686 European ancestry twins	NA	9q34.3	RP11-611D20.2	rs710411-A	0.64	1E-6		0.45	[0.27-0.63] unit increase	Illumina [5833901] (imputed)	N
1648	chr9	139457505	139457506	rs7849014	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Perceived intensity of sucrose	686 European ancestry twins	NA	9q34.3	RP11-611D20.2	rs7849014-T	0.93	4E-6		0.79	[0.46-1.12] unit increase	Illumina [5833901] (imputed)	N
1649	chr9	139497286	139497287	rs7046930	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	9q34.3	EGFL7	rs7046930-?	NR	3E-6	(PC 34:2)	2.0516098	[1.19-2.91] unit increase	Affymetrix [at least 2500000] (imputed)	N
1649	chr9	139507211	139507212	rs11793035	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	9q34.3	GPSM1	rs11793035-C	0.3311	2E-7		1.04	[1.02-1.05]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1649	chr9	139520788	139520789	rs11145807	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	9q34.3		rs11145807-?	NR	8E-12				NR [~ 8900000] (imputed)	N
1649	chr9	139520788	139520789	rs11145807	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	NA	9q34.3	EGFL7	rs11145807-A	0.4058	4E-17		0.155	[0.12-0.19] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1649	chr9	139525651	139525652	rs1889039	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	9q34.3	NR	rs1889039-?	NR	1E-11		0.29	[0.19-0.39] unit increase	Illumina [at least 830937] (imputed)	N
1649	chr9	139540384	139540385	rs7854618	29682794	Szekely E	2018-04-22	Genet Epidemiol	Genetic associations with childhood brain growth, defined in two longitudinal cohorts.	White matter growth	581 European ancestry individuals, 31 African American individuals, 8 Asian American individuals 15 admixed individuals, 80 other ancestries individuals	NA	9q34.3	LINC01451, HSPC324	rs7854618-?	NR	6E-6				Illumina [at least 653030]	N
1649	chr9	139540518	139540519	rs61456361	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	9q34.3		rs61456361-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1649	chr9	139547623	139547624	rs7020640	30843173	Popovic M	2019-03-07	J Endocrinol Invest	Genome-wide meta-analysis identifies novel loci associated with free triiodothyronine and thyroid-stimulating hormone.	Triiodothyronine levels and thyroxine levels	Up to 1,729 Croatian, Korculan (founder/genetic isolate) and Vis (founder/genetic isolate) individuals	NA	9q34.3	EGFL7	rs7020640-T	0.22	9E-7		0.026	[0.016-0.036] unit increase	Illumina [7411206] (imputed)	N
1649	chr9	139560446	139560447	rs181253980	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	9q34.3	EGFL7	rs181253980-T	0.197022	5E-10		0.01786953	[0.012-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1649	chr9	139566329	139566331	rs529509344	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Lean body mass	3,399 whole genome sequenced individuals, 11,801 European ancestry individuals	10,676 European ancestry individuals	9q34.3	EGFL7	rs529509344-CAG	0.9983	8E-6		1.046	[0.59-1.5] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1650	chr9	139604372	139604373	rs147334122	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	9q34.3	Intergenic	rs147334122-T	NR	9E-6		0.119985	[0.067-0.173] unit increase	Illumina [13519193] (imputed)	N
1650	chr9	139617835	139617836	rs6874	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9q34.3		rs6874-?	NR	4E-19				NR [~ 8900000] (imputed)	N
1650	chr9	139620332	139620333	rs72761015	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	9q34.3	DIPK1B	rs72761015-T	0.125	3E-14		0.0218	[0.016-0.027] unit decrease	Affymetrix [18391927] (imputed)	N
1650	chr9	139639957	139639958	rs2811727	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	9q34.3	LCN6	rs2811727-A	NR	7E-6		1.0522	NR	Affymetrix, Illumina [8278136] (imputed)	N
1650	chr9	139664091	139664092	rs181483657	29213071	Mendez-Giraldez R	2017-12-06	Sci Rep	GWAS of the electrocardiographic QT interval in Hispanics/Latinos generalizes previously identified loci and identifies population-specific signals.	QT interval	15,997 Hispanic/Latino individuals	NA	9q34.3	LCN15	rs181483657-C	0.05	2E-7		26.3	[16.34-36.26] ms increase	Affymetrix, Illumina [up to 17586686] (imputed)	N
1651	chr9	139805167	139805168	rs4880159	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	334,468 European ancestry, NR ancestry individuals	NA	9q34.3		rs4880159-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1651	chr9	139817572	139817573	rs4880075	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	9q34.3	TRAF2	rs4880075-C	0.812994	7E-11		0.018811803	[0.013-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1651	chr9	139835801	139835802	rs138273782	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Heel bone mineral density T score	445,855 European ancestry individuals	NA	9q34.3		rs138273782-?	NR	5E-9		0.0910897	[0.059-0.124] unit increase	NR [9800000] (imputed)	N
1651	chr9	139835801	139835802	rs138273782	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	9q34.3	FBXW5	rs138273782-A	0.99511	6E-9		0.0783293	[0.052-0.105] unit decrease	NR [13737936] (imputed)	N
1651	chr9	139838689	139838690	rs28578007	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SUMF1	5,364 Icelandic ancestry individuals	NA	9q34.3		rs28578007-T	0.4246	1E-67		0.325985	[0.29-0.36] unit decrease	Illumina [7506463] (imputed)	N
1651	chr9	139838689	139838690	rs28578007	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	9q34.3	FBXW5	rs28578007-C	0.522253	4E-11		0.014787457	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
1651	chr9	139838689	139838690	rs28578007	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q34.3	FBXW5	rs28578007-C	0.524	2E-25	(Sulfatase-modifying factor 1, SUMF1.6941.11.3)	0.26	[0.22-0.3] unit increase	Affymetrix [10572788] (imputed)	N
1651	chr9	139839903	139839904	rs2071006	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SEMG1	5,362 Icelandic ancestry individuals	NA	9q34.3		rs2071006-T	0.4257	2E-12		0.133509	[0.096-0.171] unit decrease	Illumina [7506463] (imputed)	N
1651	chr9	139840542	139840543	rs7850844	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SEPT10	5,352 Icelandic ancestry individuals	NA	9q34.3		rs7850844-A	0.04562	4E-14		0.327502	[0.24-0.41] unit increase	Illumina [7506463] (imputed)	N
1651	chr9	139840542	139840543	rs7850844	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SEMG1	5,362 Icelandic ancestry individuals	NA	9q34.3		rs7850844-A	0.04562	2E-30		0.509519	[0.42-0.6] unit increase	Illumina [7506463] (imputed)	N
1651	chr9	139840858	139840859	rs908830	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q34.3	C8G	rs908830-C	0.957	2E-13	(Semenogelin-1, SEMG1.7115.5.3)	0.46	[0.34-0.58] unit decrease	Affymetrix [10572788] (imputed)	N
1651	chr9	139841211	139841212	rs41309980	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C8G	5,344 Icelandic ancestry individuals	NA	9q34.3		rs41309980-C	0.128	9E-77		0.483845	[0.43-0.53] unit increase	Illumina [7506463] (imputed)	N
1651	chr9	139844324	139844325	rs11145940	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SUMF1	5,364 Icelandic ancestry individuals	NA	9q34.3		rs11145940-T	0.045	9E-6		0.20277	[0.11-0.29] unit increase	Illumina [7506463] (imputed)	N
1651	chr9	139844952	139844953	rs4880078	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SEPT10	5,352 Icelandic ancestry individuals	NA	9q34.3		rs4880078-A	0.4713	1E-7		0.0952707	[0.06-0.131] unit increase	Illumina [7506463] (imputed)	N
1652	chr9	139856327	139856328	rs908837	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C8G	5,344 Icelandic ancestry individuals	NA	9q34.3		rs908837-G	0.2488	1E-17		0.174182	[0.13-0.21] unit increase	Illumina [7506463] (imputed)	N
1652	chr9	139857911	139857912	rs11145948	33649486	Hardcastle AJ	2021-03-01	Commun Biol	A multi-ethnic genome-wide association study implicates collagen matrix integrity and cell differentiation pathways in keratoconus.	Keratoconus	2,116 European ancestry cases, 24,626 European ancestry controls	1, 389 European ancestry cases, 79,727 European ancestry controls, 759 South Asian ancestry cases, 8,009 South Asian ancestry controls, 405 African ancestry cases, 4,185 African ancestry controls	9q34.3	FBXW5, PTGDS, C8G, LCN12	rs11145948-A	NR	1E-11		0.173	[0.12-0.22] unit increase	Affymetrix [7701190] (imputed)	N
1652	chr9	139859012	139859013	rs7040970	32528159	Choquet H	2020-06-11	Commun Biol	A multiethnic genome-wide analysis of 44,039 individuals identifies 41 new loci associated with central corneal thickness.	Central corneal thickness	32,292 European ancestry individuals, 9,623 East Asian ancestry individuals, 1,367 Hispanic/Latino individuals, 757 African American  individuals	NA	9q34.3	LCN12	rs7040970-?	NA	3E-16		2.29	[1.74-2.84] unit increase	Affymetrix [5541230] (imputed)	N
1652	chr9	139859012	139859013	rs7040970	29760442	Iglesias AI	2018-05-14	Nat Commun	Cross-ancestry genome-wide association analysis of corneal thickness strengthens link between complex and Mendelian eye diseases.	Central corneal thickness	17,803 European ancestry individuals, 8,107 Asian ancestry individuals	NA	9q34.3	LCN12	rs7040970-T	0.56	5E-17		2.89	[2.22-3.56] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1652	chr9	139859953	139859954	rs12379667	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	9q34.3	NR	rs12379667-C	0.52328125	7E-36	(C8G, 14708_59_3)	0.3014147	[0.25-0.35] unit decrease	Illumina [> 1000000] (imputed)	N
1652	chr9	139859953	139859954	rs12379667	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	9q34.3	NR	rs12379667-C	0.52328125	6E-9	(PTGDS, 10514_5_3)	0.13818328	[0.092-0.185] unit decrease	Illumina [> 1000000] (imputed)	N
1652	chr9	139859953	139859954	rs12379667	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	9q34.3	NR	rs12379667-C	0.52328125	4E-14	(SEMG1, 7115_5_3)	0.18356809	[0.14-0.23] unit increase	Illumina [> 1000000] (imputed)	N
1652	chr9	139859953	139859954	rs12379667	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	9q34.3	NR	rs12379667-C	0.52328125	3E-39	(SUMF1, 6941_11_3)	0.32039464	[0.27-0.37] unit increase	Illumina [> 1000000] (imputed)	N
1652	chr9	139859953	139859954	rs12379667	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	9q34.3	NR	rs12379667-C	0.52328125	3E-10	(SEPT10, 12690_33_3)	0.15388063	[0.11-0.2] unit increase	Illumina [> 1000000] (imputed)	N
1652	chr9	139859953	139859954	rs12379667	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	9q34.3	NR	rs12379667-C	0.52328125	1E-9	(KLRG1, 10548_35_3)	0.14950436	[0.1-0.2] unit increase	Illumina [> 1000000] (imputed)	N
1652	chr9	139860099	139860100	rs7868669	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Central corneal thickness	16,204 European ancestry individuals	NA	9q34.3	LCN12	rs7868669-A	0.48	8E-15		3.356	[2.51-4.2] ?m increase	Affymetrix, Illumina [9249813] (imputed)	N
1652	chr9	139860263	139860264	rs11145951	23291589	Lu Y	2013-01-06	Nat Genet	Genome-wide association analyses identify multiple loci associated with central corneal thickness and keratoconus.	Corneal structure	13,057 European ancestry individuals, 2,538 Indian ancestry individuals, 2,542 Malay ancestry individuals, 1,883 Chinese ancestry individuals	NA	9q34.3	LCN12, PTGDS	rs11145951-T	0.49	6E-12		0.09	[0.07-0.11] unit increase	Affymetrix, Illumina [~ 1000000] (imputed)	N
1652	chr9	139861469	139861470	rs7019538	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PTGDS	5,344 Icelandic ancestry individuals	NA	9q34.3		rs7019538-C	0.4775	4E-13		0.118391	[0.086-0.15] unit increase	Illumina [7506463] (imputed)	N
1652	chr9	139861469	139861470	rs7019538	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q34.3	PTGDS	rs7019538-C	0.524	8E-16	(Prostaglandin-H2 D-isomerase, PTGDS.10514.5.3)	0.2	[0.16-0.24] unit increase	Affymetrix [10572788] (imputed)	N
1652	chr9	139862632	139862633	rs57024841	23328707	Tin A	2013-01-16	Nephrol Dial Transplant	Genome-wide significant locus of beta-trace protein, a novel kidney function biomarker, identified in European and African Americans.	Beta-trace protein levels	6,720 European ancestry individuals	1,734 African American individuals	9q34.3	PTGDS	rs57024841-A	0.58	1E-23	(EA)	0.05	[0.040-0.060] unit increase	Affymetrix [~ 2500000] (imputed)	N
1652	chr9	139866246	139866247	rs11790360	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	9q34.3	NR	rs11790360-T	0.52359375	4E-36	(C8G, 14708_59_3)	0.30299747	[0.26-0.35] unit decrease	Illumina [> 1000000] (imputed)	N
1652	chr9	139866246	139866247	rs11790360	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	9q34.3	NR	rs11790360-T	0.52359375	2E-13	(SEMG1, 7115_5_3)	0.17963552	[0.13-0.23] unit increase	Illumina [> 1000000] (imputed)	N
1652	chr9	139866246	139866247	rs11790360	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	9q34.3	NR	rs11790360-T	0.52359375	1E-9	(SEPT10, 12690_33_3)	0.14957823	[0.1-0.2] unit increase	Illumina [> 1000000] (imputed)	N
1652	chr9	139866246	139866247	rs11790360	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	9q34.3	NR	rs11790360-T	0.52359375	1E-9	(KLRG1, 10548_35_3)	0.15083775	[0.1-0.2] unit increase	Illumina [> 1000000] (imputed)	N
1652	chr9	139866246	139866247	rs11790360	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	9q34.3	NR	rs11790360-T	0.52359375	1E-38	(SUMF1, 6941_11_3)	0.3189142	[0.27-0.37] unit increase	Illumina [> 1000000] (imputed)	N
1652	chr9	139904036	139904037	rs7048567	30420678	Tasa T	2018-11-12	Eur J Hum Genet	Genetic variation in the Estonian population: pharmacogenomics study of adverse drug effects using electronic health records.	Adverse response to drug	16,226 European ancestry individuals	NA	9q34.3	ABCA2	rs7048567-A	0.336	5E-7	(Beta blocking agents, selective [C07AB])	1.54		Illumina [16500000] (imputed)	N
1652	chr9	139915939	139915940	rs80138802	32752121	Nedoszytko B	2020-07-31	Int J Mol Sci	Results from a Genome-Wide Association Study (GWAS) in Mastocytosis Reveal New Gene Polymorphisms Associated with WHO Subgroups.	Systemic mastocytosis	93 European ancestry cases, 5,606 European ancestry controls	NA	9q34.3	ABCA2	rs80138802-C	0.02429	4E-8		4.099	[3.55-4.64]	Illumina [281811]	N
1652	chr9	139915939	139915940	rs80138802	32752121	Nedoszytko B	2020-07-31	Int J Mol Sci	Results from a Genome-Wide Association Study (GWAS) in Mastocytosis Reveal New Gene Polymorphisms Associated with WHO Subgroups.	Mastocytosis	234 European ancestry cases, 5,606 European ancestry controls	NA	9q34.3	ABCA2	rs80138802-C	0.02429	7E-33		5.739	[5.42-6.06]	Illumina [281811]	N
1652	chr9	139915939	139915940	rs80138802	32752121	Nedoszytko B	2020-07-31	Int J Mol Sci	Results from a Genome-Wide Association Study (GWAS) in Mastocytosis Reveal New Gene Polymorphisms Associated with WHO Subgroups.	Cutaneous mastocytosis (childhood)	78 European ancestry cases, 5,606 European ancestry controls	NA	9q34.3	ABCA2	rs80138802-C	0.02429	1E-18		7.003	[6.5-7.5]	Illumina [281811]	N
1652	chr9	139915939	139915940	rs80138802	32752121	Nedoszytko B	2020-07-31	Int J Mol Sci	Results from a Genome-Wide Association Study (GWAS) in Mastocytosis Reveal New Gene Polymorphisms Associated with WHO Subgroups.	Cutaneous mastocytosis (adult)	65 European ancestry cases, 5,606 European ancestry controls	NA	9q34.3	ABCA2	rs80138802-C	0.02429	4E-15		6.926	[6.36-7.49]	Illumina [281811]	N
1652	chr9	139915939	139915940	rs80138802	32752121	Nedoszytko B	2020-07-31	Int J Mol Sci	Results from a Genome-Wide Association Study (GWAS) in Mastocytosis Reveal New Gene Polymorphisms Associated with WHO Subgroups.	Cutaneous mastocytosis	141 European ancestry cases, 5,606 European ancestry controls	NA	9q34.3	ABCA2	rs80138802-C	0.02429	2E-30		6.969	[6.59-7.35]	Illumina [281811]	N
1652	chr9	139921079	139921080	rs118135001	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	9q34.3	ABCA2	rs118135001-G	0.0131210000000001	6E-9		0.05663865	[0.038-0.076] unit increase	Affymetrix [93095623] (imputed)	N
1652	chr9	139923503	139923503	rs201480400	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	9q34.3		rs201480400-TCCCCA	NR	8E-20		0.0217	[0.017-0.026] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
1652	chr9	139925982	139925983	rs117125309	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	9q34.3	FUT7	rs117125309-A	0.013132	4E-21		0.09173697	[0.073-0.111] unit increase	Affymetrix [93095623] (imputed)	N
1652	chr9	139925982	139925983	rs117125309	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	9q34.3	FUT7	rs117125309-A	0.0132	1E-13		0.1170279	[0.086-0.148] unit increase	Affymetrix [~ 2500000] (imputed)	N
1652	chr9	139927061	139927062	rs4880192	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	9q34.3	C9orf139, FUT7	rs4880192-G	0.720436	2E-11		0.01655824	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1652	chr9	139930944	139930945	rs7047770	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	9q34.3	C9orf139	rs7047770-A	0.64215	4E-31		0.026839383	[0.022-0.031] unit increase	Affymetrix [93095623] (imputed)	N
1652	chr9	139932926	139932927	rs7025728	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	9q34.3	C9orf139, NPDC1, RP11-229P13.20	rs7025728-A	0.327148	7E-16		0.01908268	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1652	chr9	139932926	139932927	rs7025728	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	9q34.3	NPDC1, RP11-229P13.20, C9orf139	rs7025728-A	0.3285	4E-10		0.02399672	[0.016-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1652	chr9	139933060	139933060	rs369457490	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	9q34.3	NPDC1, RP11-229P13.20, C9orf139	rs369457490-AAAAT	0.5823	1E-20		0.03521166	[0.028-0.043] unit increase	Affymetrix [~ 2500000] (imputed)	N
1652	chr9	139933588	139933589	rs10781534	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	E-selectin levels	21,758 European ancestry individuals	9,173 individuals	9q34.3		rs10781534-T	0.65	8E-12		0.0652	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1652	chr9	139934019	139934020	rs6605	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	9q34.3	NPDC1	rs6605-A	0.252404	2E-24		0.026125867	[0.021-0.031] unit increase	Affymetrix [93095623] (imputed)	N
1652	chr9	139934106	139934107	rs6604	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	9q34.3		rs6604-?	NR	5E-14				NR [~ 8900000] (imputed)	N
1652	chr9	139934906	139934907	rs9411298	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	9q34.3	NPDC1	rs9411298-A	0.2291	1E-10		0.02786265	[0.019-0.036] unit increase	Affymetrix [~ 2500000] (imputed)	N
1652	chr9	139963090	139963091	rs4880087	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	9q34.3		rs4880087-A	NR	2E-10		0.014	[0.0097-0.0183] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
1652	chr9	139963934	139963935	rs7467117	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	9q34.3	SAPCD2	rs7467117-G	0.628464	4E-10		0.014480549	[0.0099-0.019] unit increase	Affymetrix [93095623] (imputed)	N
1652	chr9	139973819	139973820	rs7037849	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	9q34.3		rs7037849-T	NR	8E-9		0.0122	[0.0081-0.0163] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
1653	chr9	139990529	139990530	rs7871579	33772158	Hoggart C	2021-03-26	Eur J Hum Genet	Identification of novel locus associated with coronary artery aneurysms and validation of loci for susceptibility to Kawasaki disease.	Coronary artery aneurysm in Kawasaki disease	200 European ancestry cases, 276 European ancestry controls	NA	9q34.3	MAN1B1	rs7871579-C	0.15	5E-7		2.8	[1.8-4.2]	Illumina [4873589] (imputed)	N
1653	chr9	139993535	139993536	rs7047669	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	9q34.3		rs7047669-T	NR	2E-9		0.0118	[0.0079-0.0157] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1653	chr9	139998041	139998042	rs28373932	30276832	Edwards AC	2018-10-01	Alcohol Clin Exp Res	Meta-Analysis of Genetic Influences on Initial Alcohol Sensitivity.	Initial alcohol sensitivity	6,039 European ancestry individuals, 892 African ancestry individuals, 408 American ancestry individuals	NA	9q34.3	MAN1B1	rs28373932-?	NR	5E-6				Affymetrix, Illumina [15642250] (imputed)	N
1653	chr9	139998692	139998693	rs4880207	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	9q34.3	NR	rs4880207-T	0.76828125	2E-111	(DPP7, 8346_9_3)	0.6344133	[0.58-0.69] unit increase	Illumina [> 1000000] (imputed)	N
1653	chr9	139998692	139998693	rs4880207	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	9q34.3	NR	rs4880207-T	0.76828125	1E-10	(SUMF1, 6941_11_3)	0.1911633	[0.13-0.25] unit increase	Illumina [> 1000000] (imputed)	N
1653	chr9	140002219	140002220	rs10117795	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DPP7	5,356 Icelandic ancestry individuals	NA	9q34.3		rs10117795-A	0.2302	4E-211		0.638078	[0.6-0.68] unit decrease	Illumina [7506463] (imputed)	N
1653	chr9	140006201	140006202	rs13631	28031287	Sasayama D	2016-11-26	Hum Mol Genet	Genome-wide quantitative trait loci mapping of the human cerebrospinal fluid proteome.	Cerebrospinal fluid biomarker levels	133 Japanese ancestry individuals.	NA	9q34.3	NR	rs13631-?	NR	7E-14	(Dipeptidyl peptidase 2)			Illumina [514227]	N
1653	chr9	140008120	140008121	rs192111487	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	9q34.3	NR	rs192111487-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
1653	chr9	140008120	140008121	rs192111487	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	9q34.3		rs192111487-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1653	chr9	140008749	140008750	rs10747049	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	9q34.3	DPP7	rs10747049-C	0.75	2E-39	(Dipeptidyl peptidase 2, DPP7.8346.9.3)	0.36	[0.3-0.42] unit increase	Affymetrix [10572788] (imputed)	N
1653	chr9	140077638	140077639	rs11549105	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	9q34.3		rs11549105-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1653	chr9	140079778	140079779	rs144926207	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	9q34.3	ANAPC2	rs144926207-C	0.043694	2E-10		0.03692883	[0.026-0.048] unit increase	Affymetrix [93095623] (imputed)	N
1653	chr9	140079778	140079779	rs144926207	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	9q34.3	NR	rs144926207-?	NR	9E-11				Affymetrix [~ 8270000] (imputed)	N
1653	chr9	140079778	140079779	rs144926207	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	9q34.3	NR	rs144926207-?	NR	1E-10				Affymetrix [~ 8270000] (imputed)	N
1653	chr9	140080582	140080583	rs3922735	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	9q34.3	NR	rs3922735-A	0.25687	3E-8		0.0196947	[0.013-0.027] unit decrease	NR [19129689] (imputed)	N
1653	chr9	140088629	140088630	rs28417902	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	9q34.3	TPRN	rs28417902-A	0.032	7E-6	(Testosterone )	0.03	[NR] ng/mL increase	Illumina [899892]	N
1653	chr9	140100316	140100317	rs113809617	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	9q34.3		rs113809617-G	NR	5E-14		0.0195	[0.014-0.025] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
1653	chr9	140100316	140100317	rs113809617	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	9q34.3		rs113809617-G	NR	3E-38		0.0389	[0.033-0.045] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
1653	chr9	140100316	140100317	rs113809617	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	9q34.3		rs113809617-G	0.147205	2E-8		0.032866	[0.021-0.044] unit increase	Illumina [13476266] (imputed)	N
1653	chr9	140100316	140100317	rs113809617	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	9q34.3		rs113809617-G	NR	8E-43		0.0413	[0.035-0.047] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
1653	chr9	140100316	140100317	rs113809617	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	9q34.3		rs113809617-G	0.147423	3E-8		0.032789	[0.021-0.044] unit increase	Illumina [13476299] (imputed)	N
1653	chr9	140100316	140100317	rs113809617	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	9q34.3	NDOR1	rs113809617-G	0.131664	3E-38		0.042988017	[0.036-0.05] unit increase	Affymetrix [93095623] (imputed)	N
1653	chr9	140100316	140100317	rs113809617	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	9q34.3	NDOR1	rs113809617-G	0.13166	8E-28		0.036341902	[0.03-0.043] unit increase	Affymetrix [93095623] (imputed)	N
1653	chr9	140100316	140100317	rs113809617	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	9q34.3	NDOR1	rs113809617-G	0.131686	1E-15		0.026220465	[0.02-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
1653	chr9	140100316	140100317	rs113809617	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	9q34.3	NDOR1	rs113809617-G	0.131735	6E-11		0.02163963	[0.015-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1653	chr9	140100316	140100317	rs113809617	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	9q34.3	NDOR1	rs113809617-G	0.131651	5E-45		0.045675	[0.04-0.052] unit increase	Affymetrix [93095623] (imputed)	N
1653	chr9	140100316	140100317	rs113809617	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	9q34.3	NDOR1	rs113809617-G	0.131712	2E-16		0.0262979	[0.02-0.033] unit increase	Affymetrix [93095623] (imputed)	N
1653	chr9	140100316	140100317	rs113809617	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	9q34.3	NDOR1	rs113809617-G	0.131658	5E-56		0.05164711	[0.045-0.058] unit increase	Affymetrix [93095623] (imputed)	N
1653	chr9	140100316	140100317	rs113809617	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	9q34.3	NDOR1	rs113809617-G	0.131648	2E-18		0.02916792	[0.023-0.036] unit increase	Affymetrix [93095623] (imputed)	N
1653	chr9	140100316	140100317	rs113809617	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	9q34.3	NDOR1	rs113809617-G	0.131751	2E-39		0.04351672	[0.037-0.05] unit increase	Affymetrix [93095623] (imputed)	N
1653	chr9	140100316	140100317	rs113809617	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	9q34.3	NDOR1	rs113809617-G	0.131742	9E-32		0.03881074	[0.032-0.045] unit increase	Affymetrix [93095623] (imputed)	N
1653	chr9	140100316	140100317	rs113809617	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	9q34.3		rs113809617-?	NR	1E-12				NR [~ 8900000] (imputed)	N
1653	chr9	140100316	140100317	rs113809617	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	9q34.3		rs113809617-?	NR	4E-53				NR [~ 8900000] (imputed)	N
1653	chr9	140100316	140100317	rs113809617	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	9q34.3	NDOR1	rs113809617-G	0.1334	7E-18		0.04677004	[0.036-0.057] unit increase	Affymetrix [~ 2500000] (imputed)	N
1653	chr9	140100316	140100317	rs113809617	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	9q34.3	NDOR1	rs113809617-G	0.1334	7E-14		0.04073467	[0.03-0.051] unit increase	Affymetrix [~ 2500000] (imputed)	N
1653	chr9	140100316	140100317	rs113809617	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	9q34.3	NDOR1	rs113809617-G	0.1335	8E-16		0.0430347	[0.033-0.054] unit increase	Affymetrix [~ 2500000] (imputed)	N
1653	chr9	140100316	140100317	rs113809617	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin concentration	172,851 European ancestry individuals	NA	9q34.3	NDOR1	rs113809617-G	0.1337	7E-9		0.0303386	[0.02-0.041] unit increase	Affymetrix [~ 2500000] (imputed)	N
1653	chr9	140100316	140100317	rs113809617	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	9q34.3	NDOR1	rs113809617-G	0.1334	6E-21		0.05025887	[0.04-0.061] unit increase	Affymetrix [~ 2500000] (imputed)	N
1653	chr9	140100316	140100317	rs113809617	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	9q34.3	NDOR1	rs113809617-G	0.1335	2E-16		0.04466548	[0.034-0.055] unit increase	Affymetrix [~ 2500000] (imputed)	N
1653	chr9	140100316	140100317	rs113809617	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	9q34.3	NDOR1	rs113809617-G	0.1335	3E-14		0.04119558	[0.031-0.052] unit increase	Affymetrix [~ 2500000] (imputed)	N
1653	chr9	140103271	140103272	rs28404308	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	9q34.3	NDOR1	rs28404308-A	0.6437	4E-10		0.0024	[0.0016-0.0032] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
1653	chr9	140103271	140103272	rs28404308	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	9q34.3	NDOR1	rs28404308-A	0.6232	2E-10		0.0027	[0.0017-0.0037] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
1653	chr9	140111956	140111957	rs80043545	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	9q34.3	NR	rs80043545-A	NR	1E-11		0.0268	[0.019-0.034] unit decrease	Affymetrix [9000000] (imputed)	N
1654	chr9	140119883	140119884	rs6606567	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	9q34.3	NR	rs6606567-G	NR	1E-9		0.0191	[0.013-0.025] unit increase	Affymetrix [9000000] (imputed)	N
1654	chr9	140119883	140119884	rs6606567	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	9q34.3	NR	rs6606567-G	NR	2E-9		0.0188	[0.013-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
1654	chr9	140127343	140127344	rs141734934	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Cystatin C levels	437,846 European ancestry individuals	NA	9q34.3		rs141734934-?	NR	6E-10		0.33005	[0.22-0.44] unit increase	NR [9800000] (imputed)	N
1654	chr9	140127343	140127344	rs141734934	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Creatinine levels	437,660 European ancestry individuals	NA	9q34.3		rs141734934-?	NR	3E-9		0.345229	[0.23-0.46] unit increase	NR [9800000] (imputed)	N
1654	chr9	140127379	140127380	rs150841256	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Serum phosphate levels	400,159 European ancestry individuals	NA	9q34.3		rs150841256-?	NR	9E-14		0.389098	[0.29-0.49] unit decrease	NR [9800000] (imputed)	N
1654	chr9	140127379	140127380	rs150841256	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Cystatin C levels	437,846 European ancestry individuals	NA	9q34.3		rs150841256-?	NR	9E-15		0.353527	[0.26-0.44] unit increase	NR [9800000] (imputed)	N
1654	chr9	140127379	140127380	rs150841256	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Creatinine levels	437,660 European ancestry individuals	NA	9q34.3		rs150841256-?	NR	4E-15		0.352503	[0.26-0.45] unit increase	NR [9800000] (imputed)	N
1654	chr9	140127674	140127675	rs199690076	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Serum urea levels	437,580 European ancestry individuals	NA	9q34.3		rs199690076-?	NR	4E-10		0.229049	[0.16-0.3] unit increase	NR [9800000] (imputed)	N
1654	chr9	140127674	140127675	rs199690076	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Cystatin C levels	437,846 European ancestry individuals	NA	9q34.3		rs199690076-?	NR	1E-24		0.342299	[0.28-0.41] unit increase	NR [9800000] (imputed)	N
1654	chr9	140127674	140127675	rs199690076	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Creatinine levels	437,660 European ancestry individuals	NA	9q34.3		rs199690076-?	NR	4E-18		0.304248	[0.24-0.37] unit increase	NR [9800000] (imputed)	N
1654	chr9	140127674	140127675	rs199690076	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	9q34.3	NR	rs199690076-T	NR	2E-12		0.2771	[0.2-0.35] unit increase	Affymetrix [9000000] (imputed)	N
1654	chr9	140127674	140127675	rs199690076	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	9q34.3	NR	rs199690076-T	NR	5E-15		0.3196	[0.24-0.4] unit decrease	Affymetrix [9000000] (imputed)	N
1654	chr9	140127674	140127675	rs199690076	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	9q34.3	NR	rs199690076-T	NR	3E-21		0.3717	[0.29-0.45] unit decrease	Affymetrix [9000000] (imputed)	N
1654	chr9	140127674	140127675	rs199690076	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	9q34.3	NR	rs199690076-T	NR	3E-25		0.4078	[0.33-0.48] unit increase	Affymetrix [9000000] (imputed)	N
1654	chr9	140127674	140127675	rs199690076	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	9q34.3	NR	rs199690076-T	NR	1E-21		0.3758	[0.3-0.45] unit increase	Affymetrix [9000000] (imputed)	N
1654	chr9	140184880	140184881	rs116849669	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin I concentration	1,606 African American individuals	NA	9q34.3		rs116849669-?	NR	1E-6		0.66	[0.39-0.93] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1654	chr9	140202932	140202933	rs111693226	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Tumor necrosis factor receptor 2 levels	21,758 European ancestry individuals	9,173 individuals	9q34.3		rs111693226-T	0.022	7E-7		0.2059	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1654	chr9	140202932	140202933	rs111693226	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Tumor necrosis factor receptor 1 levels	21,758 European ancestry individuals	9,173 individuals	9q34.3		rs111693226-T	0.022	2E-7		0.2151	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1654	chr9	140205268	140205269	rs28374197	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	9q34.3		rs28374197-T	NR	4E-10		0.0157	[0.011-0.021] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1654	chr9	140207277	140207278	rs7389783	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	9q34.3	EXD3	rs7389783-T	0.319498	6E-14		0.018239861	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1654	chr9	140211259	140211260	rs140109554	27629369	Gao J	2016-09-15	Neuropsychopharmacology	Genome-Wide Association Study of Loneliness Demonstrates a Role for Common Variation.	Loneliness	2,075 European ancestry cases, 3,875 European ancestry controls, 427 African American cases, 398 African American controls, 294 Hispanic cases, 327 Hispanic controls, 57 cases, 73 controls	NA	9q34.3	EXD3	rs140109554-?	NR	8E-6	(EA)	0.127	[0.071-0.183] unit increase	Illumina [7176022] (imputed)	N
1654	chr9	140239587	140239588	rs142585779	33713768	Akenroye AT	2021-03-10	J Allergy Clin Immunol	Genome-wide Association study of Asthma, Total IgE, and Lung function in a Cohort of Peruvian Children.	Asthma (childhood onset)	436 Peruvian cases, 291 Peruvian controls	NA	9q34.3		rs142585779-?	NR	8E-6		0.39180148	unit increase	Illumina [NR] (imputed)	N
1654	chr9	140243967	140243968	rs79140116	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	9q34.3	NR	rs79140116-?	NR	4E-7		5.084	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1655	chr9	140247364	140247365	rs28688712	34269803	Casto A	2021-07-16	Blood	Genetic Variants Associated with Cytomegalovirus Infection after Allogeneic Hematopoietic Cell Transplantation.	Cytomegalovirus infection after allogeneic hematopoietic cell transplantation (donors)	up to 1,301 European ancestry donors	up to 868 European ancestry donors	9q34.3		rs28688712-?	NR	1E-6		0.59	[0.47-0.74]	Affymetrix, Illumina [29826485] (imputed)	N
1655	chr9	140251457	140251458	rs73581580	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	9q34.3		rs73581580-?	NR	3E-16		0.0427	unit increase	NR [NR]	N
1655	chr9	140251457	140251458	rs73581580	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	9q34.3	Intergenic	rs73581580-A	0.1226	9E-15	(MTAG)	0.0214	[0.016-0.027] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1655	chr9	140251457	140251458	rs73581580	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	9q34.3	Intergenic	rs73581580-A	0.123	7E-21	(MTAG)	0.024	[0.019-0.029] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1655	chr9	140251457	140251458	rs73581580	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	9q34.3		rs73581580-A	0.1248	6E-16		0.0181	[0.014-0.022] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1655	chr9	140251457	140251458	rs73581580	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	9q34.3	Intergenic	rs73581580-A	0.1248	3E-20	(MTAG)	0.0191	[0.015-0.023] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1655	chr9	140251457	140251458	rs73581580	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	9q34.3	Intergenic	rs73581580-A	0.1243	5E-14	(MTAG)	0.0267	[0.02-0.034] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1655	chr9	140257188	140257189	rs28458909	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	9q34.3		rs28458909-T	0.1224	2E-16		0.03	[0.022-0.038] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
1655	chr9	140257188	140257189	rs28458909	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	9q34.3	EXD3	rs28458909-C	0.8775	1E-33		1.0713521		Affymetrix [11880941] (imputed)	N
1655	chr9	140257188	140257189	rs28458909	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	9q34.3	EXD3	rs28458909-C	0.8775	1E-33		1.0727227		Affymetrix [11880941] (imputed)	N
1655	chr9	140257188	140257189	rs28458909	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	9q34.3		rs28458909-?	NR	3E-23				NR [~ 8900000] (imputed)	N
1655	chr9	140257188	140257189	rs28458909	28604731	Hammerschlag AR	2017-06-12	Nat Genet	Genome-wide association analysis of insomnia complaints identifies risk genes and genetic overlap with psychiatric and metabolic traits.	Ease of getting up in the morning	112,866 European ancestry individuals	NA	9q34.3	NR	rs28458909-T	0.12	6E-9		0.036	[0.024-0.048] unit decrease	Affymetrix [at least 12428592] (imputed)	N
1655	chr9	140258801	140258802	rs113727800	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	9q34.3	Intergenic	rs113727800-G	0.8773	3E-10		0.0189	[0.013-0.025] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1655	chr9	140258801	140258802	rs113727800	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	9q34.3	Intergenic	rs113727800-G	0.877	6E-10		0.0216	[0.015-0.028] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1655	chr9	140265781	140265782	rs77641763	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	9q34.3	NR	rs77641763-T	0.122	7E-15		1.074	[1.06-1.09]	Affymetrix, Illumina [NR] (imputed)	N
1655	chr9	140265781	140265782	rs77641763	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	9q34.3	NA	rs77641763-T	0.1197	2E-11	(Female)	1.08	[1.06-1.1]	Affymetrix, Illumina [NR] (imputed)	N
1655	chr9	140265781	140265782	rs77641763	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Ease of getting up in the morning	385,949 European ancestry individuals	NA	9q34.3	NR	rs77641763-T	0.122	2E-11		0.0176	[0.013-0.023] unit decrease	Affymetrix, Illumina [10862568] (imputed)	N
1655	chr9	140265781	140265782	rs77641763	27494321	Jones SE	2016-08-05	PLoS Genet	Genome-Wide Association Analyses in 128,266 Individuals Identifies New Morningness and Sleep Duration Loci.	Morning vs. evening chronotype	114,765 British individuals	NA	9q34.3	EXD3	rs77641763-C	0.88	7E-9		1.07	[1.04-1.1]	NR [16760980] (imputed)	N
1655	chr9	140265781	140265782	rs77641763	27494321	Jones SE	2016-08-05	PLoS Genet	Genome-Wide Association Analyses in 128,266 Individuals Identifies New Morningness and Sleep Duration Loci.	Chronotype	127,898 British individuals	89,283 individuals	9q34.3	EXD3	rs77641763-C	0.88	2E-12		0.039	[0.027-0.051] unit increase	NR [16760980] (imputed)	N
1655	chr9	140315024	140315025	rs28787940	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pneumonia	7,423 East Asian ancestry cases, 171,303 East Asian ancestry controls	NA	9q34.3		rs28787940-A	0.61860754	4E-8		0.09555619	[0.061-0.13] unit decrease	Illumina [13429980] (imputed)	N
1655	chr9	140332477	140332478	rs6606582	32314116	Zhang H	2020-04-20	Osteoporos Int	Pleiotropic loci underlying bone mineral density and bone size identified by a bivariate genome-wide association analysis.	Hip bone size	3,267 European ancestry individuals, 1,619 Chinese ancestry individuals, 843 African American individuals, 446 Hispanic individuals	NA	9q34.3	NR	rs6606582-G	NR	5E-10		0.14	[0.1-0.18] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1655	chr9	140332477	140332478	rs6606582	32314116	Zhang H	2020-04-20	Osteoporos Int	Pleiotropic loci underlying bone mineral density and bone size identified by a bivariate genome-wide association analysis.	Bone mineral density (hip) and hip bone size	3,267 European ancestry individuals, 1,619 Chinese ancestry individuals, 843 African American individuals, 446 Hispanic individuals	NA	9q34.3	NR	rs6606582-G	NR	7E-12				Affymetrix, Illumina [NR] (imputed)	N
1655	chr9	140332477	140332478	rs6606582	32314116	Zhang H	2020-04-20	Osteoporos Int	Pleiotropic loci underlying bone mineral density and bone size identified by a bivariate genome-wide association analysis.	Bone mineral density (hip)	3,267 European ancestry individuals, 1,619 Chinese ancestry individuals, 843 African American individuals, 446 Hispanic individuals	NA	9q34.3	NR	rs6606582-G	NR	9E-6		0.1	[0.061-0.139] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1655	chr9	140358555	140358556	rs4962238	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	9q34.3		rs4962238-T	NR	1E-17		0.0301	[0.023-0.037] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
1655	chr9	140363044	140363045	rs28670671	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	9q34.3	NR	rs28670671-?	NR	5E-8				Affymetrix [~ 8270000] (imputed)	N
1655	chr9	140371475	140371476	rs777022284	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	9q34.3	PNPLA7	rs777022284-A	0.0013	7E-6		2.3722	[1.34-3.41] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1656	chr9	140416578	140416579	rs139090762	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	9q34.3	Intergenic	rs139090762-A	NR	8E-8	(between families)	5.358	unit increase	Affymetrix [up to 15107142] (imputed)	N
1656	chr9	140488633	140488634	rs821317	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	9q34.3	ZMYND19	rs821317-A	0.1995	1E-8		0.2004	[0.13-0.27] mmHg increase	Affymetrix [NR] (imputed)	N
1656	chr9	140494248	140494249	rs9777268	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Rostral middle frontal gyrus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	9q34.3	NR	rs9777268-?		2E-6				Illumina [4322238] (imputed)	N
1656	chr9	140497071	140497072	rs1776776	30846698	Dashti HS	2019-03-07	Nat Commun	Genome-wide association study identifies genetic loci for self-reported habitual sleep duration supported by accelerometer-derived estimates.	Sleep duration	446,118 European ancestry individuals	47,180  adults, 10,554 children or adolescents	9q34.3	NR	rs1776776-T	NR	3E-8		1.104	unit increase	Affymetrix [14661600] (imputed)	N
1656	chr9	140500442	140500443	rs117137535	34785669	Grosche S	2021-11-16	Nat Commun	Rare variant analysis in eczema identifies exonic variants in DUSP1, NOTCH4 and SLC9A4.	Eczema	20,016 European ancestry cases, 380,433 European ancestry controls	NA	9q34.3		rs117137535-A	0.0335	6E-11		1.35		Affymetrix, Illumina [9397031] (imputed)	N
1656	chr9	140500442	140500443	rs117137535	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	9q34.3	ARRDC1	rs117137535-A	0.025441999999999965	4E-9		1.128491	[1.08397923928279-1.17483064332888]	NR [9572556] (imputed)	N
1656	chr9	140500442	140500443	rs117137535	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	9q34.3	NR	rs117137535-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
1656	chr9	140500442	140500443	rs117137535	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	9q34.3	NR	rs117137535-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
1656	chr9	140500442	140500443	rs117137535	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (childhood onset)	9,433 British ancestry cases, 318,237 British ancestry controls	NA	9q34.3	ARRDC1, ZMYND19, EHMT1	rs117137535-A	0.026	4E-9		1.307	[1.195-1.429]	Affymetrix [10894596] (imputed)	N
1656	chr9	140500442	140500443	rs117137535	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (age of onset)	37,846 British ancestry individuals	NA	9q34.3	ARRDC1, ZMYND19, EHMT1	rs117137535-A	0.026	3E-8		2.464	[1.59-3.34] unit decrease	Affymetrix [10894596] (imputed)	N
1656	chr9	140500442	140500443	rs117137535	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	9q34.3		rs117137535-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1657	chr9	140633274	140633275	rs3125788	34116867	Tanaka N	2021-06-02	J Allergy Clin Immunol	Eight novel susceptibility loci and putative causal variants in atopic dermatitis.	Atopic dermatitis	2,597 Japanese ancestry cases, 110,504 Japanese ancestry controls, 25,685 European ancestry cases, 76,768 European ancestry controls	NA	9q34.3		rs3125788-?	NR	2E-8		1.73	[1.43-2.1]	Illumina [5170515] (imputed)	N
1657	chr9	140633274	140633275	rs3125788	34116867	Tanaka N	2021-06-02	J Allergy Clin Immunol	Eight novel susceptibility loci and putative causal variants in atopic dermatitis.	Atopic dermatitis	2,597 Japanese ancestry cases, 110,504 Japanese ancestry controls	NA	9q34.3		rs3125788-?	NR	1E-8		1.76	[1.45-2.14]	Illumina [9900441] (imputed)	N
1658	chr9	140648010	140648011	rs35528310	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	9q34.3		rs35528310-?	NR	7E-9				NR [~ 8900000] (imputed)	N
1659	chr9	140798025	140798026	rs12552643	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	9q34.3	NR	rs12552643-G	0.1045	2E-8	(DDX3X)	0.01494	NR unit decrease	Illumina [1671387] (imputed)	N
1659	chr9	140835242	140835243	rs770303517	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	9q34.3	CACNA1B	rs770303517-T	0.0013	6E-6		1.0965	[0.62-1.57] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1659	chr9	140835242	140835243	rs770303517	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	9q34.3	CACNA1B	rs770303517-T	0.0013	1E-6		1.177	[0.7-1.65] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1659	chr9	140869105	140869106	rs78178087	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (negative Marder score)	1,390 European ancestry cases	NA	9q34.3		rs78178087-G	NR	2E-6	(GLM)	3.9925	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
1660	chr9	140933856	140933857	rs11788188	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	9q34.3	EHMT1	rs11788188-?	NR	1E-6	(S adenosylhomocysteine)	2.2683039	[1.36-3.18] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1660	chr9	140938074	140938075	rs7865267	25987655	Fernandez CA	2015-05-18	Blood	Genome-wide analysis links NFATC2 with asparaginase hypersensitivity.	Asparaginase hypersensitivity in acute lymphoblastic leukemia	3,126 child cases	182 child cases	9q34.3	CACNA1B	rs7865267-T		3E-6		2.012		Affymetrix [NR]	N
1660	chr9	140970760	140970761	rs7036881	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (negative Marder score)	1,390 European ancestry cases	NA	9q34.3		rs7036881-C	NR	7E-7	(GLM)	4.5047	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
1660	chr9	141016261	141016262	rs2278973	32201043	Smeland OB	2020-02-08	Biol Psychiatry	Genome-wide Association Analysis of Parkinson's Disease and Schizophrenia Reveals Shared Genetic Architecture and Identifies Novel Risk Loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	NA	9q34.3	CACNA1B	rs2278973-T		3E-7		0.1373	[0.085-0.19] unit increase	Illumina [NR]	N
1661	chr9	141035507	141035508	rs3004668	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	9q34.3	CACNA1B, TUBBP5	rs3004668-G	0.369	2E-6		1.070469		NR [9372253] (imputed)	N
1661	chr9	141049296	141049297	rs11137393	31151762	Gelernter J	2019-04-08	Biol Psychiatry	Genome-wide Association Study of Maximum Habitual Alcohol Intake in >140,000 U.S. European and African American Veterans Yields Novel Risk Loci.	Maximum habitual alcohol consumption	126,936 European ancestry individuals, 17,029 African American individuals	NA	9q34.3	NR	rs11137393-A	NR	6E-6	(AA)	0.187703	[0.11-0.27] unit decrease	Affymetrix [up to 6007810] (imputed)	N
1661	chr9	141066489	141066490	rs62581014	34002096	Mullins N	2021-05-17	Nat Genet	Genome-wide association study of more than 40,000 bipolar disorder cases provides new insights into the underlying biology.	Bipolar disorder	41,917 European ancestry cases, 371,549 European ancestry controls	NA	9q34.3	TUBBP5	rs62581014-C	0.634	3E-8		0.93688	[0.91-0.96]	Affymetrix, Illumina [7549318] (imputed)	N
1661	chr9	141068623	141068624	rs11137399	34002096	Mullins N	2021-05-17	Nat Genet	Genome-wide association study of more than 40,000 bipolar disorder cases provides new insights into the underlying biology.	Bipolar I disorder	25,060 European ancestry cases, 449,978 European ancestry controls	NA	9q34.3	NR	rs11137399-T	0.64	1E-10		0.91165	[0.88-0.94]	Affymetrix, Illumina [7549318] (imputed)	N
1661	chr9	141071817	141071818	rs138457511	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	9q34.3	CACNA1B	rs138457511-T	0.00953896855499378	4E-6	(F_Sutterellaceae_HB)	1.657	[0.96-2.36] unit decrease	Illumina [7711310] (imputed)	N
1661	chr9	141087365	141087366	rs1820789	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	9q34.3		rs1820789-?	NR	5E-9				NR [~ 8900000] (imputed)	N
592	chrX	990179	990180	rs4129148	17522711	Lencz T	2007-03-20	Mol Psychiatry	Converging evidence for a pseudoautosomal cytokine receptor gene locus in schizophrenia.	Schizophrenia	178 European ancestry cases, 144 European ancestry controls	NA	Xp22.33	CSF2RA, IL3RA	rs4129148-C	NR	4E-7		3.23	[2.04-5.15]	Affymetrix [439511]	N
595	chrX	1343493	1343494	rs9330638	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	Xp22.33		rs9330638-G	0.26164	3E-19		0.023916148	[0.019-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
595	chrX	1350811	1350812	rs9785465	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	Xp22.33		rs9785465-C	0.244386	2E-19		0.02670165	[0.021-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
595	chrX	1364000	1364001	rs141498873	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	Xp22.33		rs141498873-G	0.251568	3E-13		0.025407542	[0.019-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
595	chrX	1364000	1364001	rs141498873	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	Xp22.33		rs141498873-G	0.251557	5E-14		0.026336903	[0.019-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
595	chrX	1368108	1368109	rs28380386	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	Xp22.33		rs28380386-T	0.135402	7E-84		0.06805516	[0.061-0.075] unit decrease	Affymetrix [93095623] (imputed)	N
595	chrX	1373049	1373050	rs28649190	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	Xp22.33		rs28649190-C	0.132693	3E-82		0.06481243	[0.058-0.071] unit decrease	Affymetrix [93095623] (imputed)	N
595	chrX	1375186	1375187	rs28532112	34582791	Mikhaylova AV	2021-09-27	Am J Hum Genet	Whole-genome sequencing in diverse subjects identifies genetic correlates of leukocyte traits: The NHLBI TOPMed program.	Eosinophil counts	14,246 African American individuals, 686 East Asian ancestry individuals, 33,285 European American ancestry individuals, 13,585 Hispanic/Latin American individuals	199,126 African ancestry, European ancestry, Hispanic or Latin American individuals	Xp22.33		rs28532112-G	NR	5E-6		0.0901	[0.051-0.129] cell/L decrease	NR [88691872]	N
595	chrX	1413676	1413677	rs28602228	33731350	Nandakumar P	2021-03-17	Sci Adv	Nuclear genome-wide associations with mitochondrial heteroplasmy.	Mitochondrial heteroplasmy measurement	982,072 European ancestry individuals	NA	Xp22.33	CSF2RA	rs28602228-T	0.371	8E-16		0.008	[0.006-0.010] unit increase	NR [57525634] (imputed)	N
596	chrX	1453024	1453025	rs35494566	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	Xp22.33		rs35494566-G	0.249415	6E-14		0.022470973	[0.017-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
596	chrX	1453024	1453025	rs35494566	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	Xp22.33		rs35494566-G	0.249413	4E-11		0.019712426	[0.014-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
597	chrX	1583442	1583443	rs4933152	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	Xp22.33		rs4933152-G	0.106723	8E-9		0.021006407	[0.014-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
597	chrX	1583442	1583443	rs4933152	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	Xp22.33		rs4933152-G	0.106728	7E-10		0.022408715	[0.015-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
597	chrX	1585078	1585079	rs28578016	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	Xp22.33		rs28578016-T	0.189516	1E-10		0.018075963	[0.013-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
597	chrX	1585078	1585079	rs28578016	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	Xp22.33		rs28578016-T	0.189584	7E-10		0.017453998	[0.012-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
597	chrX	1585078	1585079	rs28578016	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	Xp22.33		rs28578016-T	0.189677	2E-18		0.024979902	[0.019-0.031] unit increase	Affymetrix [93095623] (imputed)	N
597	chrX	1585078	1585079	rs28578016	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	Xp22.33		rs28578016-T	0.18962	3E-11		0.019109191	[0.013-0.025] unit increase	Affymetrix [93095623] (imputed)	N
597	chrX	1585078	1585079	rs28578016	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	Xp22.33		rs28578016-T	0.189565	4E-14		0.021397209	[0.016-0.027] unit increase	Affymetrix [93095623] (imputed)	N
597	chrX	1585078	1585079	rs28578016	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	Xp22.33		rs28578016-T	0.189571	3E-13		0.020666426	[0.015-0.026] unit increase	Affymetrix [93095623] (imputed)	N
597	chrX	1699718	1699719	rs112833075	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	Xp22.33		rs112833075-A	0.111169	4E-10		0.022361929	[0.015-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
604	chrX	2559246	2559247	rs6567633	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	Xp22.33	NR	rs6567633-?	NR	5E-6				Affymetrix [NR]	N
605	chrX	2666383	2666384	rs311103	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	Xp22.33		rs311103-C	0.292846	8E-10		0.015670532	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
606	chrX	2856154	2856155	rs35143646	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	Xp22.33	NR	rs35143646-C	0.339396	2E-25		0.0175742	[0.014-0.021] unit decrease	Affymetrix [15000001]	N
606	chrX	2856154	2856155	rs35143646	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	Xp22.33	NR	rs35143646-T	0.659348	3E-18		0.00625387	[0.0048-0.0077] unit increase	Affymetrix [16582909] (imputed)	N
606	chrX	2856154	2856155	rs35143646	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	Xp22.33	NR	rs35143646-T	0.6583289999999999	1E-12		0.00882327	[0.0063-0.0114] unit increase	Affymetrix [16585854] (imputed)	N
606	chrX	2856154	2856155	rs35143646	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	Xp22.33	NR	rs35143646-T	0.659348	6E-15		0.00621647	[0.0046-0.0078] unit increase	Affymetrix [16582965] (imputed)	N
606	chrX	2856154	2856155	rs35143646	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	Xp22.33	NR	rs35143646-T	0.6583289999999999	4E-9		0.00817768	[0.0052-0.0111] unit increase	Affymetrix [16585866] (imputed)	N
606	chrX	2862720	2862721	rs211644	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	Xp22.33	NR	rs211644-C	0.690569	7E-11		0.00582224	[0.004-0.0076] unit increase	Affymetrix [16582621] (imputed)	N
606	chrX	2862720	2862721	rs211644	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	Xp22.33	NR	rs211644-C	0.690569	2E-10		0.00622605	[0.0043-0.0082] unit increase	Affymetrix [16582614] (imputed)	N
606	chrX	2868553	2868554	rs211642	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	Xp22.33		rs211642-G	NR	2E-9		0.0122	[0.0083-0.0161] unit increase	Affymetrix, Illumina [20521447] (imputed)	N
606	chrX	2871010	2871011	rs211640	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	Xp22.33		rs211640-C	NR	2E-10		0.0123	[0.0086-0.016] unit increase	Affymetrix, Illumina [20536134] (imputed)	N
607	chrX	2885722	2885723	rs12393627	22021425	Carty CL	2011-10-21	Hum Mol Genet	Genome-wide association study of body height in African Americans: the Women's Health Initiative SNP Health Association Resource (SHARe).	Height	8,149 African American female individuals	Up to 20,809 African American and African ancestry individuals	Xp22.33	ARSE	rs12393627-G	0.37	5E-12		0.093	[0.056-0.130] unit increase	Affymetrix [855034]	N
607	chrX	2885722	2885723	rs12393627	21998595	N'Diaye A	2011-10-06	PLoS Genet	Identification, replication, and fine-mapping of Loci associated with adult height in individuals of african ancestry.	Height	20,427 African ancestry individuals	Up to 16,436 African American individuals	Xp22.33	ARSE	rs12393627-A	0.63	6E-12		0.072	[0.052-0.092] unit decrease	Affymetrix, Illumina [3310998] (imputed)	N
609	chrX	3229178	3229179	rs146631797	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference	1,254 whole genome sequenced European ancestry individuals, 3,074 whole genome sequenced individuals, 29,716 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 701 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,050 Mylopotamos (founder/genetic isolate) individuals, 883 Pomak (founder/genetic isolate) individuals	205,909 European ancestry individuals	Xp22.33	MXRA5	rs146631797-T	0.006	4E-6		0.5761	[0.33-0.82] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
609	chrX	3268739	3268739	rs58415166	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	Xp22.33		rs58415166-TACATATATATATATAC	NR	4E-11		0.0139	[0.0098-0.018] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
610	chrX	3282063	3282064	rs2107482	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Intraocular pressure	101,939 European ancestry cases	NA	Xp22.33	NR	rs2107482-A		3E-9		0.08	[0.06-0.1] unit increase	NR [NR]	N
610	chrX	3336995	3336996	rs12400461	33723403	Sha Z	2021-03-15	Nat Hum Behav	The genetic architecture of structural left-right asymmetry of the human brain.	Left-right brain asymmetry	32,256 European ancestry individuals	NA	Xp22.33	ASS1P4	rs12400461-C	0.58	1E-8				NR [9312144] (imputed)	N
610	chrX	3340272	3340273	rs6567508	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	Xp22.33	intergenic	rs6567508-C	0.341894	1E-15		0.0185395	[0.014-0.023] unit decrease	NR [19129689] (imputed)	N
611	chrX	3410668	3410669	rs7059886	22808956	Lyons PA	2012-07-19	N Engl J Med	Genetically distinct subsets within ANCA-associated vasculitis.	Antineutrophil cytoplasmic antibody-associated vasculitis	914 European ancestry cases, 5,259 European ancestry controls	1,454 European ancestry cases, 1,666 European ancestry controls	Xp22.33	MXRA5	rs7059886-?	NR	1E-6		1.16	[NR]	Affymetrix [NR]	N
612	chrX	3612080	3612081	rs12390237	30367059	Teumer A	2018-10-26	Nat Commun	Genome-wide analyses identify a role for SLC17A4 and AADAT in thyroid hormone regulation.	Thyroid stimulating hormone levels	54,288 European ancestry individuals	up to 22,383 European ancestry individuals	Xp22.33	PRKX	rs12390237-A	0.62	2E-11		0.046	[0.032-0.06] unit decrease	Affymetrix, Illumina [8048941] (imputed)	N
612	chrX	3613190	3613191	rs7879951	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	Xp22.33		rs7879951-C	NR	2E-11		0.013	[0.0093-0.0167] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
612	chrX	3655559	3655560	rs4826685	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Lymphocyte counts	62,076 Japanese ancestry individuals	NA	Xp22.33	PRKX, LOC389906	rs4826685-?	NR	8E-9		0.02819	[0.019-0.038] unit decrease novel	Illumina [6108953] (imputed)	N
612	chrX	3656560	3656560	rs751305737	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	Xp22.33		rs751305737-CAA	0.268676	2E-14		0.016779974	[0.013-0.021] unit increase	Affymetrix [93095623] (imputed)	N
612	chrX	3656560	3656560	rs751305737	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	Xp22.33		rs751305737-CAA	0.268681	2E-25		0.022697553	[0.018-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
612	chrX	3660105	3660106	rs2009624	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	Xp22.33		rs2009624-C	0.284814	6E-52		0.031011844	[0.027-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
612	chrX	3660105	3660106	rs2009624	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	Xp22.33		rs2009624-C	0.284835	8E-10		0.012565993	[0.0086-0.0166] unit increase	Affymetrix [93095623] (imputed)	N
612	chrX	3661862	3661863	rs60181494	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	Xp22.33	NR	rs60181494-C	0.283464	5E-14		0.015500849	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
612	chrX	3662063	3662064	rs6641874	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	Xp22.33		rs6641874-T	NR	2E-43		0.0265	[0.023-0.03] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
612	chrX	3664073	3664074	rs6641876	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	Xp22.33		rs6641876-C	NR	7E-9		0.0103	[0.0068-0.0138] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
612	chrX	3664073	3664074	rs6641876	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	95,717 East Asian ancestry individuals	NA	Xp22.33		rs6641876-C	0.593324	2E-10		0.0253927	[0.018-0.033] unit decrease	Illumina [13471431] (imputed)	N
613	chrX	3694785	3694786	rs113446565	30898391	Lawrenson K	2019-03-19	Gynecol Oncol	Genome-wide association studies identify susceptibility loci for epithelial ovarian cancer in east Asian women.	Epithelial ovarian cancer	3,238 East Asian ancestry cases, 4,083 East Asian ancestry controls	NA	Xp22.33		rs113446565-?	NR	4E-6	(endometrioid)	1.43		Illumina [11595112] (imputed)	N
615	chrX	4035126	4035127	rs143011308	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	Xp22.33	NR	rs143011308-?	NR	4E-7	(Native Hawaiian)	0.8601	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
617	chrX	4248100	4248101	rs17219051	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	Xp22.33	NR	rs17219051-?	NR	6E-7	(Native Hawaiian)	0.8015	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
617	chrX	4281032	4281033	rs6530093	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Longevity	up to 482,000 European ancestry individuals	NA	Xp22.33	NR	rs6530093-A	NR	4E-6		0.06921	[0.04-0.099] unit decrease	Illumina [~ 540852]	N
618	chrX	4453140	4453141	rs190502389	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Trunk fat mass	3,399 whole genome sequenced individuals, 12,838 European ancestry individuals	10,667 European ancestry individuals	Xp22.32	AC108683.1	rs190502389-C	0.0037	7E-6		0.6659	[0.38-0.96] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
619	chrX	4585073	4585074	rs5916681	29698431	Roosenboom J	2018-04-26	PLoS One	Mapping genetic variants for cranial vault shape in humans.	Maximum cranial length	4,419 European ancestry individuals	NA	Xp22.32	NR	rs5916681-G	0.196	3E-6		0.8219	[0.32-1.32] unit increase	Illumina [at least 567677] (imputed)	N
620	chrX	4596137	4596138	rs5916687	19734901	van Es MA	2009-09-06	Nat Genet	Genome-wide association study identifies 19p13.3 (UNC13A) and 9p21.2 as susceptibility loci for sporadic amyotrophic lateral sclerosis.	Amyotrophic lateral sclerosis	2,323 European ancestry cases, 9,013 European ancestry controls	2,532 European ancestry cases, 5,940 European ancestry controls	Xp22.32	NR	rs5916687-?	0.27	3E-6		1.22	[NR]	Illumina [292768]	N
620	chrX	4689809	4689810	rs5961524	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	Xp22.32	NLGN4X	rs5961524-?	NR	2E-7	(SM 22:0)	0.1531356	[0.095-0.211] unit decrease	Affymetrix [at least 2500000] (imputed)	N
621	chrX	4730049	4730050	rs6530472	32790701	Rode M	2020-08-13	PLoS One	Genome-wide association analysis of pulse wave velocity traits provide new insights into the causal relationship between arterial stiffness and blood pressure.	Arterial stiffness (brachial-femoral pulse wave velocity)	3,643 European ancestry individuals	NA	Xp22.32	NR	rs6530472-T	0.79	7E-7		0.072	[0.045-0.099] unit decrease	Affymetrix [11342744] (imputed)	N
623	chrX	5003772	5003773	rs1900761	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	Xp22.32	NR	rs1900761-?	NR	3E-17				Affymetrix [NR]	N
624	chrX	5140658	5140659	rs16997125	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	Xp22.32	NR	rs16997125-?	NR	7E-22				Affymetrix [NR]	N
624	chrX	5184701	5184702	rs6638512	22808956	Lyons PA	2012-07-19	N Engl J Med	Genetically distinct subsets within ANCA-associated vasculitis.	Antineutrophil cytoplasmic antibody-associated vasculitis	914 European ancestry cases, 5,259 European ancestry controls	1,454 European ancestry cases, 1,666 European ancestry controls	Xp22.32	intergenic	rs6638512-?	NR	2E-25				Affymetrix [NR]	N
625	chrX	5369304	5369305	rs5916060	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	Xp22.32	VCX3A	rs5916060-?	NR	6E-6	(alpha hydroxybutyric acid)	0.35160246	[0.2-0.5] unit decrease	Affymetrix [at least 2500000] (imputed)	N
627	chrX	5578859	5578860	rs6529847	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 28)	4,680 European ancestry individuals	3,566 European ancestry individuals	Xp22.32		rs6529847-T	0.199276236	4E-8				Illumina [7417619] (imputed)	N
628	chrX	5763949	5763949	rs778006290	30842574	Luciano M	2019-03-06	Mol Psychiatry	The influence of X chromosome variants on trait neuroticism.	Neuroticism	405,274 European ancestry individuals	NA	Xp22.32	NR	rs778006290-CAG	0.365	8E-6		0.0089	[0.005-0.0128] unit decrease	Illumina [1686693] (imputed)	N
630	chrX	5920881	5920882	rs12009217	29483656	Pardinas AF	2018-02-26	Nat Genet	Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.	Schizophrenia	40,675 European ancestry cases, 64,643 European ancestry controls	1,651 European ancestry cases, 4,111 cases, 142,717 European ancestry controls, 11,507 controls	Xp22.32	NLGN4X	rs12009217-?	NR	2E-10		1.0672358	[1.05-1.09]	Illumina [8000000] (imputed)	N
630	chrX	6012627	6012628	rs73627050	31268507	Periyasamy S	2019-07-03	JAMA Psychiatry	Association of Schizophrenia Risk With Disordered Niacin Metabolism in an Indian Genome-wide Association Study.	Schizophrenia	816 Indian ancestry cases, 900 Indian ancestry controls, 505 Indian ancestry cases and 871 Indian ancestry controls from 405 families, up to 36,989 European and unknown ancestry cases, up to 113,075 European and unknown ancestry controls	NA	Xp22.32	NR	rs73627050-?	NR	7E-6				Illumina [up to 5582932] (imputed)	N
631	chrX	6029532	6029533	rs12845396	25056061	Ripke S	2014-07-22	Nature	Biological insights from 108 schizophrenia-associated genetic loci.	Schizophrenia	32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	1,513 European ancestry cases, 66,236 European ancestry controls	Xp22.31	NLGN4X	rs12845396-T	0.247	2E-8		1.0559661	[1.04-1.08]	Affymetrix, Illumina [9005918] (imputed)	N
631	chrX	6039359	6039359	rs771732928	30842574	Luciano M	2019-03-06	Mol Psychiatry	The influence of X chromosome variants on trait neuroticism.	Neuroticism	405,274 European ancestry individuals	NA	Xp22.31	NR	rs771732928-CA	0.4869	5E-6		0.0083	[0.0048-0.0118] unit increase	Illumina [1686693] (imputed)	N
632	chrX	6220473	6220474	rs7885458	19260141	Zemunik T	2009-02-01	Croat Med J	Genome-wide association study of biochemical traits in Korcula Island, Croatia.	Biochemical measures	898 Korculan (founder/genetic isolate) individuals	NA	Xp22.31	Neuroligin 4	rs7885458-G	0.24	3E-6	(fibrinogen)	0.23	[0.13-0.33] g/L decrease	Illumina [316730]	N
637	chrX	6922077	6922078	rs5935876	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	DHEAS levels	4,301 European ancestry men, 3,358 European ancestry women	NA	Xp22.31	NR	rs5935876-A	0.374	8E-9		0.0971084	[0.064-0.13] unit decrease	Affymetrix [up to 8900000] (imputed)	N
637	chrX	6922077	6922078	rs5935876	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	DHEAS levels	4,301 European ancestry men, 3,358 European ancestry women	NA	Xp22.31	NR	rs5935876-A	0.374	2E-8	(women)	0.188607	[0.12-0.25] unit decrease	Affymetrix [up to 8900000] (imputed)	N
638	chrX	6985693	6985694	rs4830580	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	Xp22.31	NR	rs4830580-?	NR	2E-8				Affymetrix [NR]	N
638	chrX	7055465	7055466	rs190761831	27018472	Leslie EJ	2016-04-07	Am J Hum Genet	A Genome-wide Association Study of Nonsyndromic Cleft Palate Identifies an Etiologic Missense Variant in GRHL3.	Cleft palate	38 European ancestry cases, 835 European ancestry controls, 21 Hispanic cases, 626 Hispanic controls, 2 Asian ancestry cases, 161 Asian ancestry controls, 38 Indian ancestry controls, 15 Sub-Saharan African ancestry cases, 2 African American cases, 68 Sub-Saharan African ancestry controls, 5 African American controls, 1 African control, 4 controls, 114 European ancestry case-parent trios, 30 Hispanic case-parent trios, 39 East Asian case-parent trios, 1 South East Asian ancestry case-parent trio, 5 Sub-Saharan African case-parent trios	246 European ancestry cases, 1,685 European ancestry controls	Xp22.31		rs190761831-T	NR	5E-6		6.12	[2.81-13.35]	Illumina [34985077] (imputed)	N
638	chrX	7055465	7055466	rs190761831	27018472	Leslie EJ	2016-04-07	Am J Hum Genet	A Genome-wide Association Study of Nonsyndromic Cleft Palate Identifies an Etiologic Missense Variant in GRHL3.	Cleft palate	38 European ancestry cases, 835 European ancestry controls, 21 Hispanic cases, 626 Hispanic controls, 2 Asian ancestry cases, 161 Asian ancestry controls, 38 Indian ancestry controls, 15 Sub-Saharan African ancestry cases, 2 African American cases, 68 Sub-Saharan African ancestry controls, 5 African American controls, 1 African control, 4 controls	246 European ancestry cases, 1,685 European ancestry controls	Xp22.31	NR	rs190761831-T	NR	4E-6	(EA)	6.984	[3.062-15.93]	Illumina [34985077] (imputed)	N
638	chrX	7055465	7055466	rs190761831	27018472	Leslie EJ	2016-04-07	Am J Hum Genet	A Genome-wide Association Study of Nonsyndromic Cleft Palate Identifies an Etiologic Missense Variant in GRHL3.	Cleft palate	38 European ancestry cases, 835 European ancestry controls, 21 Hispanic cases, 626 Hispanic controls, 2 Asian ancestry cases, 161 Asian ancestry controls, 38 Indian ancestry controls, 15 Sub-Saharan African ancestry cases, 2 African American cases, 68 Sub-Saharan African ancestry controls, 5 African American controls, 1 African control, 4 controls	246 European ancestry cases, 1,685 European ancestry controls	Xp22.31	NR	rs190761831-T	NR	4E-6		6.98	[3.06-15.93]	Illumina [34985077] (imputed)	N
644	chrX	7807166	7807167	rs146514374	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	Xp22.31	NR	rs146514374-?	NR	1E-7	(Native Hawaiian)	1.0285	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
646	chrX	8122625	8122626	rs186962951	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid pneumonia vs population)	1,004 European ancestry cases, 680,354 European ancestry controls, 218 Hispanic or Latin American cases, 94,318 Hispanic or Latin American controls, 64 Black or African American cases, 22,412 Black or African American controls	NA	Xp22.31		rs186962951-?	NR	5E-6		0.2886205	[0.17-0.41] unit increase	Illumina [9901720] (imputed)	N
648	chrX	8368419	8368420	rs5978865	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TP53I13	5,353 Icelandic ancestry individuals	NA	Xp22.31		rs5978865-A	0.2845	3E-22		0.16504	[0.13-0.2] unit decrease	Illumina [7506463] (imputed)	N
648	chrX	8371429	8371430	rs112276941	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TP53I13	5,353 Icelandic ancestry individuals	NA	Xp22.31		rs112276941-A	0.01998	1E-27		0.587375	[0.48-0.69] unit increase	Illumina [7506463] (imputed)	N
649	chrX	8394252	8394253	rs7892812	19734545	Need AC	2009-09-04	Hum Mol Genet	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA	Xp22.31	VCX3B	rs7892812-?	0.4747	8E-6	(SSP)			Illumina [475971]	N
649	chrX	8501638	8501639	rs808125	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TP53I13	5,353 Icelandic ancestry individuals	NA	Xp22.31		rs808125-T	0.2657	3E-14		0.131996	[0.098-0.166] unit decrease	Illumina [7506463] (imputed)	N
651	chrX	8711753	8711754	rs1015495	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 17, height of vermillion upper lip)	2,187 European ancestry individuals	NA	Xp22.31	NR	rs1015495-A	0.3391	1E-6		0.1304	[0.078-0.183] unit decrease	Illumina [10677593] (imputed)	N
652	chrX	8841158	8841159	rs144237495	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Lung cancer	2,479 White British ancestry cases, 272,351 White British ancestry controls	NA	Xp22.31		rs144237495-?	NR	4E-6		1.3162	[1.2-1.43]	NR [673172]	N
652	chrX	8879873	8879874	rs61642945	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Hemoglobin	108,769 Japanese ancestry individuals	NA	Xp22.31	FAM9A, FAM9B	rs61642945-?	NR	4E-8		0.02145	[0.014-0.029] unit increase novel	Illumina [6108953] (imputed)	N
652	chrX	8879873	8879874	rs61642945	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Hematocrit	108,757 Japanese ancestry individuals	NA	Xp22.31	FAM9A, FAM9B	rs61642945-?	NR	3E-8		0.02148	[0.014-0.029] unit increase novel	Illumina [6108953] (imputed)	N
652	chrX	8880679	8880680	rs5933688	34255042	Schmitz D	2021-07-13	J Clin Endocrinol Metab	Genome-Wide Association Study of Estradiol Levels, and the Causal Effect of Estradiol on Bone Mineral Density.	Estradiol levels	13,367 European ancestry male cases, 134,323 European ancestry male controls	NA	Xp22.31	FAM9A	rs5933688-G	0.275	7E-30		1.118	[1.097-1.140]	Affymetrix [7871717] (imputed)	N
652	chrX	8880679	8880680	rs5933688	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Estradiol levels	206,927 European ancestry men	NA	Xp22.31	NR	rs5933688-G	0.275717	3E-37		0.00858299	[0.0073-0.0099] unit increase	Affymetrix [16582268] (imputed)	N
652	chrX	8880679	8880680	rs5933688	28272467	Heilmann-Heimbach S	2017-03-08	Nat Commun	Meta-analysis identifies novel risk loci and yields systematic insights into the biology of male-pattern baldness.	Male-pattern baldness	10,846 European ancestry cases, 11,672 European ancestry controls	NA	Xp22.31		rs5933688-G	0.29	5E-9		0.1	[0.061-0.139] unit increase	Affymetrix, Illumina [8004650] (imputed)	N
652	chrX	8880679	8880680	rs5933688	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Male-pattern baldness	9,009 European ancestry cases, 8,491 European ancestry controls	NA	Xp22.31	FAM9A, FAM9B	rs5933688-?	NR	4E-8		1.102	[1.065-1.141]	Illumina [13436641] (imputed)	N
652	chrX	8886703	8886704	rs138776890	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	152,447 East Asian ancestry individuals	NA	Xp22.31		rs138776890-A	0.306191	6E-14		0.0203055	[0.015-0.026] unit increase	Illumina [13478948] (imputed)	N
652	chrX	8895215	8895216	rs5978985	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Age at voice drop	55,871 European ancestry individuals	NA	Xp22.31	FAM9A, FAM9B	rs5978985-?	NR	3E-9		0.024	[-0.032-0.016] unit decrease	Illumina [12039491]	N
652	chrX	8895825	8895826	rs17269655	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	153,015 East Asian ancestry individuals	NA	Xp22.31		rs17269655-G	0.30703	2E-15		0.0218192	[0.016-0.027] unit increase	Illumina [13478961] (imputed)	N
652	chrX	8901389	8901390	rs59585459	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	Xp22.31		rs59585459-A	NR	2E-44		0.0219	[0.019-0.025] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
652	chrX	8901389	8901390	rs59585459	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	Xp22.31		rs59585459-A	NR	5E-68		0.0258	[0.023-0.029] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
652	chrX	8901389	8901390	rs59585459	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	Xp22.31		rs59585459-A	NR	4E-66		0.026	[0.023-0.029] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
652	chrX	8906694	8906695	rs111386834	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	153,512 East Asian ancestry individuals	NA	Xp22.31		rs111386834-C	0.313803	2E-11		0.0182726	[0.013-0.024] unit increase	Illumina [13479135] (imputed)	N
652	chrX	8906694	8906695	rs111386834	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	Xp22.31	NR	rs111386834-C	0.26779299999999995	3E-670		0.1322	[0.13-0.14] unit increase	Affymetrix [16577424] (imputed)	N
652	chrX	8906892	8906893	rs112265145	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	Xp22.31	NR	rs112265145-C	0.266636	3E-186		0.0347973	[0.032-0.037] unit increase	Affymetrix [16578495] (imputed)	N
652	chrX	8906892	8906893	rs112265145	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	Xp22.31	NR	rs112265145-C	0.26734	1E-372		0.0976096	[0.093-0.102] unit increase	Affymetrix [16577313] (imputed)	N
652	chrX	8906892	8906893	rs112265145	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	Xp22.31	NR	rs112265145-C	0.266421	5E-462		0.0854405	[0.082-0.089] unit increase	Affymetrix [16583148] (imputed)	N
652	chrX	8910962	8910963	rs113401767	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	Xp22.31	ANOS1	rs113401767-C	0.2745	1E-8		5.72	NR z score decrease	Illumina [26237160] (imputed)	N
652	chrX	8912580	8912581	rs12839542	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	Xp22.31		rs12839542-G	0.189802	4E-14		0.019237574	[0.014-0.024] unit increase	Affymetrix [93095623] (imputed)	N
652	chrX	8912593	8912594	rs12845465	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Glomerular filtration rate	143,658 Japanese ancestry individuals	NA	Xp22.31	FAM9A, FAM9B	rs12845465-?	NR	5E-9		0.02076	[0.014-0.028] unit decrease novel	Illumina [6108953] (imputed)	N
652	chrX	8912593	8912594	rs12845465	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Creatinine levels	142,097 Japanese ancestry individuals	NA	Xp22.31	FAM9A, FAM9B	rs12845465-?	NR	5E-9		0.01965	[0.013-0.026] unit increase novel	Illumina [6108953] (imputed)	N
652	chrX	8912627	8912628	rs139036121	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	Xp22.31		rs139036121-T	NR	9E-11		0.014	[0.0097-0.0183] unit increase	Affymetrix, Illumina [20535842] (imputed)	N
653	chrX	8913181	8913182	rs112591782	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	Xp22.31	intergenic	rs112591782-G	0.267622	2E-66		0.0426843	[0.038-0.048] unit increase	NR [19129689] (imputed)	N
653	chrX	8913825	8913826	rs5934505	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	Xp22.31		rs5934505-C	NR	3E-18		0.0128	[0.0099-0.0157] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
653	chrX	8913825	8913826	rs5934505	34337532	Fantus RJ	2021-05-25	Eur Urol Open Sci	Genetic Susceptibility for Low Testosterone in Men and Its Implications in Biology and Screening: Data from the UK Biobank.	Low testosterone levels	13,409 European ancestry male cases, 98,267 European ancestry male controls	4,426 European ancestry male cases, 32,800 European ancestry male controls	Xp22.31	NR	rs5934505-T	0.72	2E-108		1.57	NR	NR [8853336] (imputed)	N
653	chrX	8913825	8913826	rs5934505	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	Xp22.31		rs5934505-C	0.268045	9E-71		0.036817435	[0.033-0.041] unit increase	Affymetrix [93095623] (imputed)	N
653	chrX	8913825	8913826	rs5934505	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	Xp22.31		rs5934505-C	0.26806	5E-68		0.03606161	[0.032-0.04] unit increase	Affymetrix [93095623] (imputed)	N
653	chrX	8913825	8913826	rs5934505	29146897	Pirastu N	2017-11-17	Nat Commun	GWAS for male-pattern baldness identifies 71 susceptibility loci explaining 38% of the risk.	Male-pattern baldness	25,662 British ancestry cases, 17,928 British ancestry controls	13,367 European ancestry cases, 11,851 European ancestry controls, 3,436 cases, 2,435 controls	Xp22.31	FAM9B	rs5934505-T	NR	4E-13		0.16296883	[0.12-0.21] unit increase	Affymetrix [27512692] (imputed)	N
653	chrX	8913825	8913826	rs5934505	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		Xp22.31	NR	rs5934505-C	NR	2E-14		0.08238	NR unit increase	NR [NR] (imputed)	N
653	chrX	8913825	8913826	rs5934505	22936694	Jin G	2012-08-30	Hum Mol Genet	Genome-wide association study identifies a new locus JMJD1C at 10q21 that may influence serum androgen levels in men.	Androgen levels	3,225 European ancestry male individuals	NA	Xp22.31	FAM9B	rs5934505-G	0.278	2E-8	(serum testosterone)	0.091	[0.060-0.122] unit increase	Illumina [642461]	N
653	chrX	8916645	8916646	rs17307280	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	Xp22.31		rs17307280-C	0.268094	3E-41		0.027819386	[0.024-0.032] unit increase	Affymetrix [93095623] (imputed)	N
653	chrX	8916645	8916646	rs17307280	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	Xp22.31		rs17307280-C	0.268221	4E-9		0.01216762	[0.0081-0.0162] unit increase	Affymetrix [93095623] (imputed)	N
653	chrX	8916645	8916646	rs17307280	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	Xp22.31	FAM9B	rs17307280-A	0.73309	1E-24		0.0216641	[0.018-0.026] unit decrease	NR [13737936] (imputed)	N
653	chrX	8916645	8916646	rs17307280	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	Xp22.31		rs17307280-?	NR	8E-41		0.025237	[0.021-0.029] unit decrease	Affymetrix [20259828] (imputed)	N
653	chrX	8916645	8916646	rs17307280	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	Xp22.31	FAM9B	rs17307280-C	0.2714	6E-7		0.02386	[0.014-0.033] unit increase	NR [17166351] (imputed)	N
653	chrX	8916645	8916646	rs17307280	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	Xp22.31	FAM9B	rs17307280-C	0.2714	5E-17	(men)	0.0733	[0.056-0.09] unit increase	NR [17166351] (imputed)	N
653	chrX	8917205	8917206	rs5934507	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	Xp22.31		rs5934507-G	0.268115	2E-17		0.017667966	[0.014-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
655	chrX	9259390	9259391	rs12851939	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	Xp22.31	FAM9B	rs12851939-?	NR	2E-7	(thyroxine)	0.43428743	[0.27-0.6] unit decrease	Affymetrix [at least 2500000] (imputed)	N
655	chrX	9302659	9302660	rs34437079	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	Xp22.31	TBL1X	rs34437079-?		2E-18				Affymetrix, Illumina [NR] (imputed)	N
656	chrX	9307422	9307423	rs12842575	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	Xp22.31	NR	rs12842575-T		6E-9		0.06	[0.04-0.08] unit increase	NR [NR]	N
656	chrX	9343753	9343754	rs72611485	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	Xp22.31	NR	rs72611485-?	NR	4E-6		1.0448	[0.54-1.55] unit increase	Illumina [at least 560000] (imputed)	N
656	chrX	9425573	9425574	rs4830411	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	Xp22.31	NR	rs4830411-G	0.42194600000000004	9E-26		0.00707146	[0.0057-0.0085] unit increase	Affymetrix [16582909] (imputed)	N
656	chrX	9425573	9425574	rs4830411	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	Xp22.31	NR	rs4830411-G	0.422458	1E-10		0.00790328	[0.0054-0.0104] unit increase	Affymetrix [16585854] (imputed)	N
656	chrX	9425573	9425574	rs4830411	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	Xp22.31	NR	rs4830411-G	0.42194600000000004	3E-20		0.00704419	[0.0055-0.0086] unit increase	Affymetrix [16582965] (imputed)	N
656	chrX	9425573	9425574	rs4830411	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	Xp22.31	NR	rs4830411-G	0.422458	7E-9		0.00817188	[0.0053-0.0111] unit increase	Affymetrix [16585866] (imputed)	N
657	chrX	9437462	9437463	rs5934618	34407845	Morra A	2021-08-18	Breast Cancer Res	Association of germline genetic variants with breast cancer-specific survival in patient subgroups defined by clinic-pathological variables related to tumor biology and type of systemic treatment.	15-year breast cancer-specific survival (grade 3 tumor)	22,737 European ancestry individuals	NA	Xp22.31		rs5934618-?	NR	1E-8		1.32	[1.2-1.45]	NR [10000000] (imputed)	N
658	chrX	9572186	9572187	rs73631501	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	Xp22.2	NR	rs73631501-T	0.09719900000000004	7E-17		0.011225	[0.0085-0.0139] unit increase	Affymetrix [16582621] (imputed)	N
658	chrX	9572186	9572187	rs73631501	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	Xp22.2	NR	rs73631501-T	0.09719900000000004	2E-15		0.0110763	[0.0082-0.014] unit increase	Affymetrix [16582614] (imputed)	N
658	chrX	9581079	9581079	rs542658168	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	Xp22.2		rs542658168-CA	NR	6E-13		0.0227	[0.017-0.029] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
658	chrX	9626251	9626252	rs5979144	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Gamma glutamyl transferase levels in excessive alcohol consumption	951 individuals	NA	Xp22.2	NR	rs5979144-?	NR	1E-7		0.1878	[0.12-0.26] unit decrease	Illumina [~ 7800000] (imputed)	N
659	chrX	9751473	9751474	rs5934683	22634755	Dunlop MG	2012-05-27	Nat Genet	Common variation near CDKN1A, POLD3 and SHROOM2 influences colorectal cancer risk.	Colorectal cancer	8,323 European ancestry cases, 9,457 European ancestry controls	19,513 European ancestry cases, 17,657 European ancestry controls, 1,583 Japanese ancestry cases, 1,898 Japanese ancestry controls	Xp22.2	SHROOM2	rs5934683-?	NR	7E-10		1.07	[1.04-1.10]	Illumina [NR] (imputed)	N
659	chrX	9763897	9763898	rs2732875	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Colorectal cancer	6,581 European ancestry cases, 463,421 European ancestry controls, 8,305 East Asian ancestry cases, 159,386 East Asian ancestry controls	NA	Xp22.2		rs2732875-G	NR	3E-11		0.0728	[0.051-0.094] unit decrease	Affymetrix, Illumina [25843452] (imputed)	N
659	chrX	9763897	9763898	rs2732875	31089142	Law PJ	2019-05-14	Nat Commun	Association analyses identify 31 new risk loci for colorectal cancer susceptibility.	Colorectal cancer	31,197 European ancestry cases, 61,770 European ancestry controls	NA	Xp22.2	NR	rs2732875-C	NR	8E-12		1.18	[1.13-1.24]	Affymetrix, Illumina [> 10000000] (imputed)	N
659	chrX	9811094	9811095	rs960417	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 91,972 European ancestry controls	6,852 European ancestry cases, 193,117 European ancestry controls	Xp22.2	NR	rs960417-A	0.734063666	3E-7		1.0747885	[1.05-1.10]	Affymetrix, Illumina [20400945] (imputed)	N
659	chrX	9811094	9811095	rs960417	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	Xp22.2	NR	rs960417-A	NR	1E-17		1.048	[1.04-1.06]	Affymetrix, Illumina [29235255] (imputed)	N
659	chrX	9814134	9814135	rs2405942	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Prostate cancer	11,599 European ancestry cases, 199,628 European ancestry controls, 5,672 East Asian ancestry cases, 84,660 East Asian ancestry controls	NA	Xp22.2		rs2405942-A	NR	5E-10		0.0682	[0.047-0.09] unit increase	Affymetrix, Illumina [25775424] (imputed)	N
659	chrX	9814134	9814135	rs2405942	33293427	Emami NC	2020-12-08	Cancer Res	A large-scale association study detects novel rare variants, risk genes, functional elements, and polygenic architecture of prostate cancer susceptibility.	Prostate cancer	14,113 European ancestry cases, 194,140 European ancestry controls	NA	Xp22.2	NR	rs2405942-A	NR	2E-6		1.06	NR	Affymetrix [at least 232408] (imputed)	N
659	chrX	9814134	9814135	rs2405942	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	Xp22.2	NR	rs2405942-A	0.78	2E-12		1.05	[1.04-1.06]	Illumina [20370935] (imputed)	N
659	chrX	9814134	9814135	rs2405942	23535732	Eeles RA	2013-04-01	Nat Genet	Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array.	Prostate cancer	11,085 European ancestry cases, 11,463 European ancestry controls	19,662 European ancestry cases, 19,715 European ancestry controls	Xp22.2	GPR143, LOC100288814, SHROOM2, TBL1X, WWC3	rs2405942-A	0.79	2E-10		1.14	[1.09-1.2]	Illumina [~ 2600000] (imputed)	N
659	chrX	9815801	9815802	rs5933765	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Prostate cancer	7,438 White British ancestry cases, 118,206 White British ancestry controls	NA	Xp22.2		rs5933765-?	NR	3E-8		0.919644	[0.89-0.95]	NR [680312]	N
660	chrX	9837584	9837585	rs5934710	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	Xp22.2		rs5934710-C	NR	2E-10		0.0142	[0.0099-0.0185] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
661	chrX	9988638	9988639	rs6640588	33961016	Moksnes MR	2021-05-07	Hum Mol Genet	Genome-wide association study of cardiac troponin I in the general population.	Change in high-sensitivity cardiac troponin I concentration	5,178 European ancestry individuals	NA	Xp22.2		rs6640588-G	0.0443	7E-7		0.26	[0.16-0.36] unit increase	Illumina [21233433] (imputed)	N
661	chrX	10009992	10009993	rs5979239	28701861	Randall CL	2017-06-15	Pain Res Manag	A Preliminary Genome-Wide Association Study of Pain-Related Fear: Implications for Orofacial Pain.	Fear of medical pain (dental)	Up to 1,367 European ancestry individuals, up to 159 African American individuals, up to 13 Hispanic individuals, up to 23 Asian, Native American and other ancestry individuals, up to 21 individuals	NA	Xp22.2	NR	rs5979239-A	0.04	2E-6		2.04	unit decrease	Illumina [8591557] (imputed)	N
661	chrX	10065348	10065350	rs35632285	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	Xp22.2		rs35632285-T	0.639793	2E-8		0.00975289	[0.0064-0.0131] unit decrease	Illumina [13479295] (imputed)	N
662	chrX	10119248	10119248	rs34777570	26379185	Garcia-Etxebarria K	2015-09-17	PLoS One	No Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity.	Mild influenza (H1N1) infection	107 European ancestry mild cases, 549 European ancestry population controls	NA	Xp22.2	WWC3, CLCN4	rs34777570-?	0.0	1E-9				Affymetrix [547296]	N
662	chrX	10121927	10121935	rs367602857	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	Xp22.2		rs367602857-C	NR	1E-15		0.0172	[0.013-0.021] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
663	chrX	10231690	10231691	rs12388359	19581569	Treutlein J	2009-07-01	Arch Gen Psychiatry	Genome-wide association study of alcohol dependence.	Alcohol dependence	476 European ancestry cases, 1,358 European ancestry controls	1,024 European ancestry cases, 996 European ancestry controls	Xp22.2	intergenic	rs12388359-T	0.11	4E-6		1.61	[1.32-2.00]	Illumina [524396]	N
664	chrX	10414873	10414874	rs112519383	34165540	Justice AE	2021-06-24	Hum Mol Genet	Genome-wide association study of body fat distribution traits in Hispanics/Latinos from the HCHS/SOL.	Hip circumference adjusted for BMI	5,200 Hispanic or Latin American males	up to 12,341 Hispanic or Latin American males, 758 African American males, 4,281 European ancestry males	Xp22.2		rs112519383-A	0.98	4E-6		4.614	z score decrease	Illumina [NR] (imputed)	N
665	chrX	10601425	10601426	rs2464673	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SF3B4	5,350 Icelandic ancestry individuals	NA	Xp22.2		rs2464673-T	0.01971	1E-13		0.123398	[0.091-0.156] unit increase	Illumina [7506463] (imputed)	N
668	chrX	10900089	10900090	rs146462868	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	Xp22.2	NR	rs146462868-?	NR	4E-6		0.1896	[0.11-0.27] unit decrease	Illumina [at least 560000] (imputed)	N
669	chrX	11048691	11048692	rs5934953	19734545	Need AC	2009-09-04	Hum Mol Genet	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA	Xp22.2	HCCS	rs5934953-?	0.02285	1E-7	(PAL6)			Illumina [475971]	N
669	chrX	11071426	11071427	rs145906151	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	Xp22.2	NR	rs145906151-?	NR	8E-6		0.1826	[0.1-0.26] unit decrease	Illumina [at least 560000] (imputed)	N
669	chrX	11095185	11095186	rs370971458	30842574	Luciano M	2019-03-06	Mol Psychiatry	The influence of X chromosome variants on trait neuroticism.	Neuroticism	405,274 European ancestry individuals	NA	Xp22.2	NR	rs370971458-A	0.9957	2E-6		0.0996	[0.058-0.141] unit decrease	Illumina [1686693] (imputed)	N
669	chrX	11132016	11132017	rs181601455	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein B4GALT3	5,358 Icelandic ancestry individuals	NA	Xp22.2		rs181601455-T	0.01255	7E-20		0.140742	[0.11-0.17] unit increase	Illumina [7506463] (imputed)	N
670	chrX	11209183	11209184	rs138271349	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	Xp22.2	NR	rs138271349-T	0.04939300000000002	4E-10		0.0227996	[0.015-0.03] unit increase	Affymetrix [16583148] (imputed)	N
670	chrX	11209183	11209184	rs138271349	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	Xp22.2	NR	rs138271349-T	0.049892999999999965	6E-9		0.0284812	[0.019-0.038] unit increase	Affymetrix [16577424] (imputed)	N
671	chrX	11283824	11283825	rs17321447	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	Xp22.2	ARHGAP6	rs17321447-A	0.123808	2E-11		0.019371113	[0.014-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
671	chrX	11295308	11295309	rs5979390	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Varicose veins	22,037 European ancestry cases, 437,665 European ancestry controls, 474 East Asian ancestry cases, 178,252 East Asian ancestry controls	NA	Xp22.2		rs5979390-T	NR	2E-11		0.072	[0.051-0.093] unit decrease	Affymetrix, Illumina [25842955] (imputed)	N
671	chrX	11310418	11310419	rs5979394	29855589	Chernus J	2018-05-31	Sci Rep	GWAS reveals loci associated with velopharyngeal dysfunction.	Velopharyngeal dysfunction	54 Hispanic or Latin American and unknown ancestry cases, 922 Hispanic or Latin American and unknown ancestry controls	NA	Xp22.2	NR	rs5979394-?	NR	2E-6		0.060750704	[NR] unit decrease	Illumina [at least 269494] (imputed)	N
671	chrX	11339210	11339211	rs2788524	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer (advanced)	15,167 European ancestry cases, 58,308 European ancestry controls	NA	Xp22.2	intergenic	rs2788524-G	NR	4E-10		1.1	[1.07-1.13]	Illumina [20370935] (imputed)	N
671	chrX	11339210	11339211	rs2788524	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	Xp22.2	NR	rs2788524-G	0.15	9E-11		1.06	[1.04-1.07]	Illumina [20370935] (imputed)	N
671	chrX	11380741	11380742	rs12388118	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 18)	2,187 European ancestry individuals	NA	Xp22.2	NR	rs12388118-C	0.168	1E-6		0.1682	[0.1-0.24] unit decrease	Illumina [10677593] (imputed)	N
672	chrX	11482633	11482634	rs17321482	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	Xp22.2	NR	rs17321482-C	NR	1E-12		1.06	[1.04-1.08]	Affymetrix, Illumina [29235255] (imputed)	N
672	chrX	11482633	11482634	rs17321482	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer (advanced)	15,167 European ancestry cases, 58,308 European ancestry controls	NA	Xp22.2	ARHGAP6	rs17321482-C	NR	1E-8		1.1	[NR]	Illumina [20370935] (imputed)	N
672	chrX	11482633	11482634	rs17321482	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	Xp22.2	ARHGAP6	rs17321482-C	0.87	2E-13		1.07	[1.05-1.09]	Illumina [20370935] (imputed)	N
673	chrX	11570848	11570849	rs5978439	29855589	Chernus J	2018-05-31	Sci Rep	GWAS reveals loci associated with velopharyngeal dysfunction.	Velopharyngeal dysfunction	54 Hispanic or Latin American and unknown ancestry cases, 922 Hispanic or Latin American and unknown ancestry controls	NA	Xp22.2	NR	rs5978439-?	NR	3E-6		0.057698797	[NR] unit decrease	Illumina [at least 269494] (imputed)	N
673	chrX	11594042	11594043	rs5933901	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	Xp22.2		rs5933901-?	NR	2E-13				NR [9705931] (imputed)	N
674	chrX	11697805	11697806	rs149783627	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	Xp22.2	NR	rs149783627-?	NR	5E-6		0.1768	[0.1-0.25] unit decrease	Illumina [at least 560000] (imputed)	N
674	chrX	11699267	11699268	rs5935134	27018472	Leslie EJ	2016-04-07	Am J Hum Genet	A Genome-wide Association Study of Nonsyndromic Cleft Palate Identifies an Etiologic Missense Variant in GRHL3.	Cleft palate	38 European ancestry cases, 835 European ancestry controls, 21 Hispanic cases, 626 Hispanic controls, 2 Asian ancestry cases, 161 Asian ancestry controls, 38 Indian ancestry controls, 15 Sub-Saharan African ancestry cases, 2 African American cases, 68 Sub-Saharan African ancestry controls, 5 African American controls, 1 African control, 4 controls, 114 European ancestry case-parent trios, 30 Hispanic case-parent trios, 39 East Asian case-parent trios, 1 South East Asian ancestry case-parent trio, 5 Sub-Saharan African case-parent trios	246 European ancestry cases, 1,685 European ancestry controls	Xp22.2		rs5935134-A	NR	9E-6		3.33	[1.96-5.65]	Illumina [34985077] (imputed)	N
674	chrX	11699267	11699268	rs5935134	27018472	Leslie EJ	2016-04-07	Am J Hum Genet	A Genome-wide Association Study of Nonsyndromic Cleft Palate Identifies an Etiologic Missense Variant in GRHL3.	Cleft palate	38 European ancestry cases, 835 European ancestry controls, 21 Hispanic cases, 626 Hispanic controls, 2 Asian ancestry cases, 161 Asian ancestry controls, 38 Indian ancestry controls, 15 Sub-Saharan African ancestry cases, 2 African American cases, 68 Sub-Saharan African ancestry controls, 5 African American controls, 1 African control, 4 controls	246 European ancestry cases, 1,685 European ancestry controls	Xp22.2	NR	rs5935134-A	NR	7E-6	(EA)	3.855	[2.141-6.941]	Illumina [34985077] (imputed)	N
674	chrX	11699267	11699268	rs5935134	27018472	Leslie EJ	2016-04-07	Am J Hum Genet	A Genome-wide Association Study of Nonsyndromic Cleft Palate Identifies an Etiologic Missense Variant in GRHL3.	Cleft palate	38 European ancestry cases, 835 European ancestry controls, 21 Hispanic cases, 626 Hispanic controls, 2 Asian ancestry cases, 161 Asian ancestry controls, 38 Indian ancestry controls, 15 Sub-Saharan African ancestry cases, 2 African American cases, 68 Sub-Saharan African ancestry controls, 5 African American controls, 1 African control, 4 controls	246 European ancestry cases, 1,685 European ancestry controls	Xp22.2	NR	rs5935134-A	NR	7E-6		3.86	[2.14-6.94]	Illumina [34985077] (imputed)	N
677	chrX	12114920	12114921	rs144371252	33482370	Kim SK	2021-01-19	J Shoulder Elbow Surg	A Genome Wide Association Study For Shoulder Impingement and Rotator Cuff Disease.	Shoulder impingement or rotator cuff tear	3,864 European ancestry shoulder impingement cases, 5,701 European ancestry rotator cuff tear cases, up to 614,568 European ancestry controls	NA	Xp22.2	FRMPD4	rs144371252-A	0.0842	2E-9		1.298	NR	Affymetrix [up to 17556449] (imputed)	N
677	chrX	12177054	12177055	rs4141343	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	Xp22.2	NR	rs4141343-?	NR	2E-6				Affymetrix [NR]	N
677	chrX	12186040	12186041	rs12833832	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	Xp22.2	NR	rs12833832-?	NR	7E-12				Affymetrix [NR]	N
679	chrX	12350484	12350485	rs183387128	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 1 levels	252 European ancestry individuals	NA	Xp22.2		rs183387128-C	NR	9E-6		13.0	[7.38-18.62] unit increase	Illumina [NR] (imputed)	N
680	chrX	12463691	12463692	rs5935344	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	Xp22.2	PRPS2	rs5935344-?	NR	7E-6	(PC 38:4)	0.14145471	[0.08-0.203] unit increase	Affymetrix [at least 2500000] (imputed)	N
680	chrX	12504290	12504291	rs7876155	29698431	Roosenboom J	2018-04-26	PLoS One	Mapping genetic variants for cranial vault shape in humans.	Maximum cranial width	4,419 European ancestry individuals	NA	Xp22.2	NR	rs7876155-T	0.1049	5E-6		0.8383	[0.3-1.37] unit decrease	Illumina [at least 567677] (imputed)	N
682	chrX	12833099	12833100	rs7892586	26606652	Alarcon-Riquelme ME	2015-11-25	Arthritis Rheumatol	Genome-Wide Association Study in an Amerindian Ancestry Population Reveals Novel Systemic Lupus Erythematosus Risk Loci and the Role of European Admixture.	Systemic lupus erythematosus	862 Native American ancestry-enriched North American cases, 531 Native American ancestry-enriched South American cases, 1,973 Native American ancestry-enriched North American controls, 344 Native American ancestry-enriched South American controls	NA	Xp22.2	PRPS2	rs7892586-?	0.712	3E-6		1.369863	[1.14-1.67]	Illumina [580483] (imputed)	N
682	chrX	12839151	12839152	rs7062536	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	Systemic lupus erythematosus	1,639 East Asian ancestry cases, 2,410 East Asian ancestry controls	NA	Xp22.2	NR	rs7062536-A	NR	3E-6				Illumina [NR] (imputed)	N
682	chrX	12839789	12839790	rs6641111	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	Xp22.2	PRPS2	rs6641111-C	0.694	3E-25		1.191	[1.16-1.22]	Illumina [11270530] (imputed)	N
683	chrX	12867176	12867177	rs769725944	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	Xp22.2	MRPL35P4	rs769725944-A	0.0036	2E-6		0.6829	[0.4-0.97] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
683	chrX	12918287	12918288	rs4830478	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	Xp22.2	NR	rs4830478-A	0.797	2E-9		1.136	[1.09-1.18]	Illumina [11270530] (imputed)	N
683	chrX	12961255	12961256	rs180726824	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	Xp22.2		rs180726824-A	NR	3E-9		0.0123	[0.0082-0.0164] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
683	chrX	12971523	12971524	rs5979785	20190752	Dubois PC	2010-02-28	Nat Genet	Multiple common variants for celiac disease influencing immune gene expression.	Celiac disease	4,533 European ancestry cases, 10,750 European ancestry controls	4,918 European ancestry cases, 5,684 European ancestry controls	Xp22.2	TLR7, TLR8	rs5979785-?	0.74	6E-8		1.14	[1.09-1.19]	Illumina [292387]	N
684	chrX	12976994	12976995	rs9698867	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	Xp22.2		rs9698867-C	NR	7E-9		0.011	[0.0073-0.0147] unit increase	Affymetrix, Illumina [20529698] (imputed)	N
684	chrX	13023740	13023741	rs850637	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	Xp22.2	TMSB4X, FAM9C	rs850637-?	NR	8E-14		1.046	[1.03-1.06]	Affymetrix [9000000] (imputed)	N
684	chrX	13023740	13023741	rs850637	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	Xp22.2	TMSB4X, FAM9C	rs850637-G	NR	6E-12		1.04	[1.03-1.05]	Affymetrix [9000000] (imputed)	N
687	chrX	13376809	13376810	rs142204301	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	Xp22.2	LOC100093698, ATXN3L, LOC100133123	rs142204301-A	0.0169	3E-6		1.23491	[1.15-1.32]	NR [9372253] (imputed)	N
687	chrX	13477310	13477311	rs73633565	31196165	Lee E	2019-06-13	Hum Genomics	Genome-wide enriched pathway analysis of acute post-radiotherapy pain in breast cancer patients: a prospective cohort study.	Acute post-radiotherapy pain in breast cancer	136 Hispanic cases, 75 European ancestry cases, 102 African ancestry cases, 45 cases, 265 Hispanic controls, 282 European ancestry controls, 194 African ancestry controls, 45 controls	NA	Xp22.2	EGFL6	rs73633565-G	0.16	8E-6		1.9	[1.43-2.52]	Illumina [1344832] (imputed)	N
688	chrX	13510205	13510206	rs7063195	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	Xp22.2		rs7063195-A	NR	1E-8		0.0096	[0.0063-0.0129] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
688	chrX	13510205	13510206	rs7063195	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	Xp22.2		rs7063195-A	NR	2E-9		0.011	[0.0075-0.0145] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
688	chrX	13512773	13512773	rs111689944	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	Xp22.2		rs111689944-TCTAA	0.476083	5E-31		0.022459999	[0.019-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
688	chrX	13512773	13512773	rs111689944	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	Xp22.2		rs111689944-TCTAA	0.476093	3E-11		0.012836976	[0.009-0.0166] unit decrease	Affymetrix [93095623] (imputed)	N
688	chrX	13521551	13521552	rs2361151	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	Xp22.2	NR	rs2361151-C	0.516698	3E-10		0.011866392	[0.0082-0.0156] unit increase	Affymetrix [93095623] (imputed)	N
688	chrX	13521551	13521552	rs2361151	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	Xp22.2		rs2361151-C	0.516699	7E-13		0.013598167	[0.0099-0.0173] unit increase	Affymetrix [93095623] (imputed)	N
688	chrX	13615117	13615118	rs5978649	23412934	Gourraud PA	2013-02-13	Brain	A genome-wide association study of brain lesion distribution in multiple sclerosis.	Multiple sclerosis	284 European ancestry individuals		Xp22.2	EGFL6	rs5978649-?		4E-6	(Cluxel minimum distance)			Illumina [208975]	N
689	chrX	13714061	13714062	rs12558341	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	Xp22.2	RAB9A	rs12558341-G	0.622202	1E-10		0.012262007	[0.0085-0.016] unit decrease	Affymetrix [93095623] (imputed)	N
691	chrX	13930921	13930922	rs6528024	29230059	Sanchez-Roige S	2017-12-11	Nat Neurosci	Genome-wide association study of delay discounting in 23,217 adult research participants of European ancestry.	Delayed reward discounting	23,127 European ancestry individuals	928 European ancestry individuals	Xp22.2	GPM6B	rs6528024-T	0.025	1E-8		0.1	[0.061-0.139] unit decrease	Illumina [11508756] (imputed)	N
691	chrX	13954396	13954397	rs66819623	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	23,963 European ancestry cases, 306,942 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	43,254 European ancestry cases, 1,471,118 European ancestry controls	Xp22.2	GPM6B	rs66819623-T	NR	2E-10		0.0384	unit increase	Illumina [15409056] (imputed)	N
693	chrX	14168997	14168998	rs61273829	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	91,908 East Asian ancestry individuals	NA	Xp22.2		rs61273829-C	0.167744	7E-9		0.0282898	[0.019-0.038] unit increase	Illumina [13469940] (imputed)	N
698	chrX	14860102	14860103	rs138331350	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	Xp22.2	NR	rs138331350-G	NR	1E-12		0.049	unit decrease	Affymetrix [at least 7091467] (imputed)	N
698	chrX	14860102	14860103	rs138331350	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	Xp22.2	NR	rs138331350-G	0.942	3E-11	(EA)	0.048	unit decrease	Affymetrix [at least 7091467] (imputed)	N
698	chrX	14893174	14893175	rs139120857	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	Xp22.2		rs139120857-A	NR	1E-43		0.0539	[0.046-0.062] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
698	chrX	14893174	14893175	rs139120857	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	High density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	Xp22.2	MOSPD2	rs139120857-?		2E-10		0.0727	[0.05-0.095] unit decrease	Illumina [31500000] (imputed)	N
698	chrX	14893174	14893175	rs139120857	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	Xp22.2	MOSPD2	rs139120857-A	0.061221	2E-10		0.024450513	[0.017-0.032] unit increase	Affymetrix [93095623] (imputed)	N
698	chrX	14893174	14893175	rs139120857	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	Xp22.2	MOSPD2	rs139120857-A	0.061216	2E-12		0.02685238	[0.019-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
698	chrX	14929374	14929375	rs35164803	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	Xp22.2	MOSPD2	rs35164803-A	0.036382	1E-9		0.029685484	[0.02-0.039] unit increase	Affymetrix [93095623] (imputed)	N
699	chrX	14947269	14947270	rs749624882	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	Xp22.2	MOSPD2	rs749624882-A	0.9987	2E-6		1.4418	[0.84-2.04] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
699	chrX	14950530	14950531	rs5980075	23192594	Velez Edwards DR	2012-11-29	Hum Genet	Gene-environment interactions and obesity traits among postmenopausal African-American and Hispanic women in the Women's Health Initiative SHARe Study.	Waist-to-hip circumference ratio (dietary energy interaction)	8,203 African American females, 3,484 Hispanic females	NA	Xp22.2	MOSPD2, LOC100128521	rs5980075-T	0.47	5E-7	(Hispanic)	0.04	[0.03-0.06] unit increase	Affymetrix [706791]	N
701	chrX	15252251	15252252	rs112827279	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	Xp22.2	NR	rs112827279-?	NR	5E-8	(AA)	1.0337	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
701	chrX	15283902	15283903	rs12687599	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	Xp22.2	NR	rs12687599-A	0.49943400000000004	2E-13		0.00494309	[0.0036-0.0063] unit increase	Affymetrix [16582909] (imputed)	N
701	chrX	15283902	15283903	rs12687599	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	Xp22.2	NR	rs12687599-A	0.49943400000000004	8E-9		0.00446381	[0.003-0.006] unit increase	Affymetrix [16582965] (imputed)	N
701	chrX	15285874	15285878	rs202243227	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	Xp22.2		rs202243227-C	NR	5E-12		0.0134	[0.0097-0.0171] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
701	chrX	15286456	15286456	rs780309846	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	Xp22.2	NR	rs780309846-AAAAAAC	0.472444	8E-11		0.00501999	[0.0034-0.0066] unit increase	Affymetrix [16582621] (imputed)	N
701	chrX	15286456	15286456	rs780309846	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	Xp22.2	NR	rs780309846-AAAAAAC	0.472444	1E-8		0.00462142	[0.0029-0.0063] unit increase	Affymetrix [16582614] (imputed)	N
701	chrX	15308291	15308292	rs188779336	25147954	Enroth S	2014-08-22	Nat Commun	Strong effects of genetic and lifestyle factors on biomarker variation and use of personalized cutoffs.	vascular endothelial growth factor D levels	up to 653 individuals	up to 317 individuals	Xp22.2	ASB11	rs188779336-G	0.012998	1E-15		1.58	[1.19-1.97] unit decrease	Illumina [4840842] (imputed)	N
701	chrX	15311070	15311071	rs6653931	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	Xp22.2	ASB9	rs6653931-?	NR	6E-6	(serotonin)	0.17828451	[0.1-0.26] unit decrease	Affymetrix [at least 2500000] (imputed)	N
702	chrX	15365437	15365438	rs146086561	25147954	Enroth S	2014-08-22	Nat Commun	Strong effects of genetic and lifestyle factors on biomarker variation and use of personalized cutoffs.	vascular endothelial growth factor D levels	up to 653 individuals	up to 317 individuals	Xp22.2	FIGF	rs146086561-T	0.01109	2E-15		1.57	[1.18-1.96] unit decrease	Illumina [4840842] (imputed)	N
702	chrX	15414382	15414383	rs143438383	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein VEGFD	5,364 Icelandic ancestry individuals	NA	Xp22.2		rs143438383-A	0.02608	7E-9		0.273683	[0.18-0.37] unit increase	Illumina [7506463] (imputed)	N
702	chrX	15436622	15436623	rs192812042	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein VEGFD	5,366 Icelandic ancestry individuals	NA	Xp22.2		rs192812042-A	0.1589	2E-97		0.442923	[0.4-0.48] unit increase	Illumina [7506463] (imputed)	N
702	chrX	15436622	15436623	rs192812042	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein VEGFD	5,364 Icelandic ancestry individuals	NA	Xp22.2		rs192812042-A	0.1589	2E-122		0.469338	[0.43-0.51] unit increase	Illumina [7506463] (imputed)	N
702	chrX	15463720	15463721	rs234502	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein VEGFD	5,364 Icelandic ancestry individuals	NA	Xp22.2		rs234502-C	0.1218	1E-8		0.130941	[0.086-0.176] unit increase	Illumina [7506463] (imputed)	N
706	chrX	15916192	15916193	rs780138897	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	Xp22.2	RNU5F-7P	rs780138897-T	0.0017	7E-6		1.1085	[0.62-1.59] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
706	chrX	15964844	15964845	rs7050036	26635082	Soler Artigas M	2015-12-04	Nat Commun	Sixteen new lung function signals identified through 1000 Genomes Project reference panel imputation.	Lung function (FEV1/FVC)	38,199 European ancestry adults	54,550 European ancestry adults, 5,062 children	Xp22.2	AP1S2, GRPR	rs7050036-T	NR	4E-8	(adults)	0.023	[0.015-0.031] unit decrease	Affymetrix, Illumina [8694268] (imputed)	N
709	chrX	16282701	16282702	rs774376863	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference	1,254 whole genome sequenced European ancestry individuals, 3,074 whole genome sequenced individuals, 29,716 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 701 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,050 Mylopotamos (founder/genetic isolate) individuals, 883 Pomak (founder/genetic isolate) individuals	205,909 European ancestry individuals	Xp22.2	AC078993.1	rs774376863-T	0.0017	3E-6		1.2112	[0.7-1.72] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
711	chrX	16643904	16643905	rs58373185	30842574	Luciano M	2019-03-06	Mol Psychiatry	The influence of X chromosome variants on trait neuroticism.	Neuroticism	405,274 European ancestry individuals	NA	Xp22.2	NR	rs58373185-A	0.7385	8E-6		0.0093	[0.0052-0.0134] unit increase	Illumina [1686693] (imputed)	N
712	chrX	16697182	16697183	rs7049850	31476763	Otsuka I	2019-09-02	Neuropsychopharmacology	Genome-wide association studies identify polygenic effects for completed suicide in the Japanese population.	Suicide	746 Japanese ancestry cases, 14,049 Japanese ancestry controls	NA	Xp22.2	CTPS2	rs7049850-T	NR	1E-7		1.66	[1.38-2.00]	Illumina [8625325] (imputed)	N
712	chrX	16762157	16762158	rs4830563	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	Xp22.2		rs4830563-A	NR	3E-16		0.0145	[0.011-0.018] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
713	chrX	16782467	16782468	rs5934328	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	Xp22.2	NR	rs5934328-T	0.705695	2E-17		0.00610505	[0.0046-0.0076] unit increase	Affymetrix [16582909] (imputed)	N
713	chrX	16782467	16782468	rs5934328	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	Xp22.2	NR	rs5934328-T	0.705695	3E-13		0.00602366	[0.0044-0.0077] unit increase	Affymetrix [16582965] (imputed)	N
713	chrX	16789927	16789928	rs6632893	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	Xp22.2	NR	rs6632893-A	0.706227	7E-11		0.0055033	[0.0037-0.0073] unit increase	Affymetrix [16582621] (imputed)	N
713	chrX	16789927	16789928	rs6632893	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	Xp22.2	NR	rs6632893-A	0.706227	1E-10		0.00572594	[0.0038-0.0076] unit increase	Affymetrix [16582614] (imputed)	N
713	chrX	16789942	16789943	rs7883420	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	Xp22.2		rs7883420-C	NR	4E-9		0.0109	[0.0074-0.0144] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
713	chrX	16830672	16830673	rs5969745	28139693	Hoffmann TJ	2017-01-31	Nat Commun	Genome-wide association study of prostate-specific antigen levels identifies novel loci independent of prostate cancer.	Prostate-specific antigen levels (conditioned on lead SNPs)	28,503 European ancestry individuals	2,716 Latino individuals, 2,518 East Asian ancestry individuals, 1,585 African American individuals, 6,193 European ancestry individuals (later diagnosed with prostate cancer)	Xp22.2	TXLNG	rs5969745-?	0.6	3E-13	(conditional on Round 1 SNPs)	0.03	unit increase	Affymetrix [10109774] (imputed)	N
713	chrX	16852326	16852327	rs3747367	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	Xp22.2	NR	rs3747367-A	0.695299	3E-9		0.00764224	[0.005-0.0103] unit increase	Affymetrix [16585854] (imputed)	N
713	chrX	16887996	16887997	rs113369180	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	Xp22.2	RBBP7	rs113369180-?		1E-8				Affymetrix, Illumina [NR] (imputed)	N
713	chrX	16904883	16904884	rs6629191	29703947	Jawinski P	2018-04-27	Mol Psychiatry	Human brain arousal in the resting state: a genome-wide association study.	Resting-state electroencephalogram vigilance	1,877 European ancestry individuals	NA	Xp22.2	RNU4-6P	rs6629191-G	0.888	8E-6	(Mean vigilance)	0.3556	[0.2-0.51] unit increase	Affymetrix [8042262] (imputed)	N
714	chrX	16975534	16975534	rs34675762	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	Xp22.2		rs34675762-CA	NR	4E-11		0.0111	[0.0078-0.0144] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
715	chrX	17045410	17045411	rs143049324	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	Xp22.2	NR	rs143049324-?	NR	6E-9	(AA)	1.2848	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
719	chrX	17597996	17597997	rs5955950	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	Xp22.13	SCML1	rs5955950-?	NR	2E-6	(TAG 52:6)	1.4706377	[0.86-2.08] unit increase	Affymetrix [at least 2500000] (imputed)	N
720	chrX	17698396	17698397	rs5955543	22544364	Turnbull C	2012-04-29	Nat Genet	A genome-wide association study identifies susceptibility loci for Wilms tumor.	Wilms tumor	757 European ancestry cases, 1,879 European ancestry controls	1,488 European ancestry cases, 3,851 European ancestry controls	Xp22.13	NR	rs5955543-G	0.01	1E-9		2.64	[1.74-4.01]	Illumina [599255]	N
720	chrX	17820344	17820345	rs16980679	28139693	Hoffmann TJ	2017-01-31	Nat Commun	Genome-wide association study of prostate-specific antigen levels identifies novel loci independent of prostate cancer.	Prostate-specific antigen levels	28,503 European ancestry individuals	2,716 Latino individuals, 2,518 East Asian ancestry individuals, 1,585 African American individuals, 6,193 European ancestry individuals (later diagnosed with prostate cancer), 5,603 European ancestry individuals	Xp22.13	RAI2	rs16980679-G	0.95	3E-15		0.0765243	[0.058-0.096] unit increase	Affymetrix [10109774] (imputed)	N
723	chrX	18212181	18212182	rs137948999	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	Xp22.13	NR	rs137948999-?	NR	4E-6	(Native Hawaiian)	0.8279	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
724	chrX	18257520	18257521	rs137959675	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	Xp22.13		rs137959675-C	NR	3E-11		0.0513	[0.036-0.066] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
726	chrX	18482664	18482665	rs5909184	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	Xp22.13		rs5909184-T	NR	5E-35		0.0178	[0.015-0.021] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
726	chrX	18490403	18490404	rs11094741	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	Xp22.13		rs11094741-A	NR	4E-12		0.0118	[0.0085-0.0151] unit decrease	Affymetrix, Illumina [20538307] (imputed)	N
726	chrX	18503044	18503045	rs5909186	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD40 on monocytes	3,629 Sardinian (founder/genetic isolate) ancestry individuals	NA	Xp22.13		rs5909186-G	0.00564	7E-9		0.8766	[0.58-1.17] unit increase	Illumina [18218967] (imputed)	N
726	chrX	18597868	18597869	rs4825261	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	Xp22.13	CDKL5	rs4825261-C	0.7148	1E-9		6.06	NR z score decrease	Illumina [26237160] (imputed)	N
731	chrX	19204223	19204224	rs139545172	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	Xp22.13	NR	rs139545172-?	NR	3E-7		0.3328	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
731	chrX	19207377	19207378	rs192490304	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Chronic sinus infection	5,291 European ancestry cases, 79,622 European ancestry controls	NA	Xp22.13	NR	rs192490304-?	NR	1E-6		0.4448	[0.28-0.61] unit decrease	Illumina [at least 560000] (imputed)	N
732	chrX	19272060	19272061	rs73451523	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Myopia (age of diagnosis)	104,293 European ancestry individuals	NA	Xp22.12	NR	rs73451523-A	0.9812	4E-10		0.2714	[0.19-0.36] unit decrease	Illumina [~ 10600000] (imputed)	N
732	chrX	19303681	19303682	rs9988321	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	Xp22.12	MAP3K15	rs9988321-?	NR	6E-6	(3-hydroxyphenylacetic acid)	2.630142	[1.49-3.77] unit decrease	Affymetrix [at least 2500000] (imputed)	N
732	chrX	19303970	19303971	rs12838632	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	Xp22.12	MAP3K15	rs12838632-?	NR	7E-6	(arginine)	7.1332664	[4.03-10.24] unit increase	Affymetrix [at least 2500000] (imputed)	N
732	chrX	19379639	19379640	rs15943	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	Xp22.12		rs15943-C	NR	6E-10		0.0786	[0.054-0.103] unit decrease	Affymetrix, Illumina [20535873] (imputed)	N
733	chrX	19406118	19406119	rs1390170	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	Xp22.12	PDHA1	rs1390170-?	NR	3E-6	(TAG 56:3)	0.5361339	[0.31-0.76] unit increase	Affymetrix [at least 2500000] (imputed)	N
733	chrX	19443721	19443722	rs56212339	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	Xp22.12		rs56212339-C	NR	4E-9		0.0485	[0.032-0.065] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
733	chrX	19453513	19453514	rs139945247	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Chronic sinus infection	5,291 European ancestry cases, 79,622 European ancestry controls	NA	Xp22.12	NR	rs139945247-?	NR	9E-6		0.3423	[0.2-0.48] unit decrease	Illumina [at least 560000] (imputed)	N
735	chrX	19750825	19750826	rs201174275	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	Xp22.12		rs201174275-T	NR	4E-15		0.02	[0.015-0.025] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
736	chrX	19797713	19797714	rs57187243	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	Xp22.12		rs57187243-C	NR	3E-14		0.0227	[0.017-0.029] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
736	chrX	19823805	19823806	rs57525297	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	Xp22.12		rs57525297-G	NR	4E-8		0.0145	[0.0094-0.0196] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
736	chrX	19896626	19896627	rs61374510	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	Xp22.12	SH3KBP1	rs61374510-T	0.104796	8E-10		0.020473547	[0.014-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
737	chrX	19923334	19923335	rs4825323	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	Xp22.12		rs4825323-A	0.131843	1E-10		0.017839212	[0.012-0.023] unit increase	Affymetrix [93095623] (imputed)	N
737	chrX	19937508	19937508	rs150758887	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	Xp22.12		rs150758887-CA	NR	9E-9		0.0117	[0.0078-0.0156] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
737	chrX	19957006	19957007	rs6527953	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	Xp22.12		rs6527953-A	NR	1E-8		0.0127	[0.0084-0.017] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
737	chrX	19959143	19959144	rs5955867	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	Xp22.12	CXorf23	rs5955867-C	0.137744	4E-10		0.017362876	[0.012-0.023] unit increase	Affymetrix [93095623] (imputed)	N
737	chrX	19959143	19959144	rs5955867	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	Xp22.12	CXorf23	rs5955867-C	0.137728	1E-9		0.016900718	[0.011-0.022] unit increase	Affymetrix [93095623] (imputed)	N
737	chrX	20001848	20001849	rs139151396	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	Xp22.12		rs139151396-C	NR	1E-9		0.0118	[0.0081-0.0155] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
737	chrX	20044806	20044807	rs72620220	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	Xp22.12		rs72620220-A	NR	5E-15		0.0206	[0.016-0.026] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
738	chrX	20143369	20143370	rs13179	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	Xp22.12		rs13179-T	NR	1E-11		0.015	[0.011-0.019] unit decrease	Affymetrix, Illumina [20536134] (imputed)	N
738	chrX	20143369	20143370	rs13179	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	Xp22.12		rs13179-T	NR	1E-9		0.0142	[0.0097-0.0187] unit decrease	Affymetrix, Illumina [20521447] (imputed)	N
738	chrX	20154345	20154346	rs73447108	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	Xp22.12		rs73447108-G	NR	1E-10		0.0099	[0.007-0.0128] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
738	chrX	20154345	20154346	rs73447108	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	Xp22.12	NR	rs73447108-C	0.801919	8E-18		0.0172508	[0.013-0.021] unit increase	Affymetrix [15000001]	N
738	chrX	20184036	20184037	rs7892835	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	Xp22.12	NR	rs7892835-G	0.853126	8E-17		0.00711939	[0.0052-0.009] unit increase	Affymetrix [16582909] (imputed)	N
738	chrX	20184036	20184037	rs7892835	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	Xp22.12	NR	rs7892835-G	0.853595	6E-17		0.00795337	[0.0057-0.0102] unit increase	Affymetrix [16582621] (imputed)	N
738	chrX	20184036	20184037	rs7892835	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	Xp22.12	NR	rs7892835-G	0.853126	3E-15		0.00781226	[0.0057-0.0099] unit increase	Affymetrix [16582965] (imputed)	N
738	chrX	20184036	20184037	rs7892835	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	Xp22.12	NR	rs7892835-G	0.853595	4E-15		0.00821615	[0.0058-0.0106] unit increase	Affymetrix [16582614] (imputed)	N
739	chrX	20224567	20224568	rs4078459	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	Xp22.12		rs4078459-G	NR	4E-18		0.0187	[0.015-0.023] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
739	chrX	20252491	20252492	rs7057375	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	Xp22.12		rs7057375-T	NR	4E-15		0.019	[0.014-0.024] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
742	chrX	20615248	20615249	rs17313971	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	Xp22.12	NR	rs17313971-G		2E-10		0.1	[0.061-0.139] unit increase	NR [NR]	N
742	chrX	20615248	20615249	rs17313971	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	Xp22.12	RPS6KA3	rs17313971-?		3E-20				Affymetrix, Illumina [NR] (imputed)	N
742	chrX	20656504	20656505	rs5990908	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	Xp22.12	intergenic	rs5990908-C	0.875	2E-6		1.0835057		NR [9372253] (imputed)	N
743	chrX	20781502	20781503	rs986682	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	Xp22.12		rs986682-A	NR	6E-9		0.0124	[0.0083-0.0165] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
744	chrX	20876198	20876199	rs17248169	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	Xp22.12	CNKSR2	rs17248169-A	0.9447	8E-9		5.773	[5.76-5.78] z-score decrease	Affymetrix, Illumina [10000000] (imputed)	N
746	chrX	21144849	21144850	rs185781801	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	Xp22.12	RP11-274G22.1	rs185781801-T	0.9939	1E-6		0.8664	[0.52-1.21] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
747	chrX	21322922	21322923	rs12392936	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	Xp22.12	intergenic	rs12392936-A	0.911	6E-6		1.11193	[1.07-1.16]	NR [9372253] (imputed)	N
748	chrX	21380265	21380266	rs1378559	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Neuropsychiatric disorders	19,099 European ancestry attention deficit hyperactivity disorder cases, 18,381 European ancestry autism spectrum disorder cases, 20,352 European ancestry bipolar disorder cases, 170,756 European ancestry major depressive disorder cases, 33,640 European ancestry schizophrenia cases, 466,420 European ancestry controls	NA	Xp22.12	NR	rs1378559-T	NR	4E-9		5.867	NR z score increase	NR [NR]	N
748	chrX	21380265	21380266	rs1378559	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	Xp22.12	CNKSR2	rs1378559-T	0.834	7E-6		1.07369	[1.04-1.1]	NR [9372253] (imputed)	N
748	chrX	21380265	21380266	rs1378559	25056061	Ripke S	2014-07-22	Nature	Biological insights from 108 schizophrenia-associated genetic loci.	Schizophrenia	32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	1,513 European ancestry cases, 66,236 European ancestry controls	Xp22.12	CNKSR2	rs1378559-T	0.831	2E-12		1.09	[1.064-1.116]	Affymetrix, Illumina [9005918] (imputed)	N
748	chrX	21494389	21494390	rs62590551	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	Xp22.12	NR	rs62590551-A	0.9029	5E-9		1.056	[1.04-1.08]	Affymetrix, Illumina [NR] (imputed)	N
749	chrX	21569919	21569920	rs6633421	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	Xp22.12		rs6633421-G	0.321244003	5E-9		0.045367397	[0.03-0.061] unit decrease	Illumina [13429769] (imputed)	N
749	chrX	21569919	21569920	rs6633421	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	Xp22.12		rs6633421-G	NR	2E-11		0.0409	[0.029-0.053] unit decrease	Affymetrix, Illumina [25845091] (imputed)	N
749	chrX	21569919	21569920	rs6633421	33740410	Warrier V	2021-03-16	Lancet Psychiatry	Gene-environment correlations and causal effects of childhood maltreatment on physical and mental health: a genetically informed approach.	Childhood maltreatment	185,414 European ancestry individuals	NA	Xp22.12	NR	rs6633421-A	0.86	8E-9		0.031	[0.021-0.041] unit increase	Affymetrix, Illumina [at least 500527] (imputed)	N
749	chrX	21569919	21569920	rs6633421	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	Xp22.12	NR	rs6633421-?	NR	1E-11		1.0767	[1.06-1.1]	Affymetrix, Illumina [12447948] (imputed)	N
749	chrX	21569919	21569920	rs6633421	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Longevity	up to 482,000 European ancestry individuals	NA	Xp22.12	NR	rs6633421-G	NR	1E-6		0.01594	[0.0095-0.0224] unit increase	Illumina [~ 540852]	N
749	chrX	21569919	21569920	rs6633421	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	Xp22.12	CNKSR2	rs6633421-A	0.68	3E-8		1.04	1.03-1.06	Illumina [12557761] (imputed)	N
753	chrX	22040807	22040808	rs178678	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	Xp22.11		rs178678-C	NR	6E-10		0.0106	[0.0073-0.0139] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
753	chrX	22051033	22051034	rs178710	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Phosphorus levels	42,793 Japanese ancestry individuals	NA	Xp22.11	PHEX	rs178710-?	NR	4E-13		0.04154	[0.03-0.053] unit decrease novel	Illumina [6108953] (imputed)	N
753	chrX	22134657	22134658	rs5951698	22889924	Scharf JM	2012-08-14	Mol Psychiatry	Genome-wide association study of Tourette's syndrome.	Tourette syndrome	778 European ancestry cases, 4,414 European ancestry controls, 242 Ashkenazi Jewish cases, 354 Ashkenazi Jewish controls, 265 French Canadian founder cases, 196 French Canadian founder controls	211 Latin American cases, 285 Latin American controls	Xp22.11	PHEX	rs5951698-G	0.0032	6E-6		5.65	[NR]	Illumina [484295]	N
753	chrX	22148050	22148051	rs1540283	22610502	Kennedy RB	2012-05-19	Hum Genet	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IFN-alpha)	Up to 512 European ancestry individuals, up to 199 African American individuals	NA	Xp22.11	PHEX	rs1540283-G		9E-9	(AA)			Illumina [NR]	N
754	chrX	22160991	22160992	rs12559632	21326311	Bhatnagar P	2011-02-17	J Hum Genet	Genome-wide association study identifies genetic variants influencing F-cell levels in sickle-cell patients.	F-cell distribution in sickle cell anaemia	440 African American individuals	NA	Xp22.11	PHEX	rs12559632-A	0.25	3E-6		1.16	[0.69-1.63] unit decrease	Illumina [660740]	N
754	chrX	22239719	22239720	rs3752433	24489884	Mick E	2014-01-01	PLoS One	Genome-wide association study of proneness to anger.	Anger	8,747 European ancestry individuals	NA	Xp22.11	PHEX	rs3752433-A	0.312	3E-7	(Reaction)	0.15	[NR] unit increase	Affymetrix [677643]	N
755	chrX	22339571	22339575	rs148405753	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	Xp22.11		rs148405753-T	NR	3E-8		0.0112	[0.0073-0.0151] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
756	chrX	22435505	22435506	rs113288656	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	Xp22.11	NR	rs113288656-?	NR	2E-7	(AA)	1.1184	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
756	chrX	22492143	22492144	rs147101678	27018472	Leslie EJ	2016-04-07	Am J Hum Genet	A Genome-wide Association Study of Nonsyndromic Cleft Palate Identifies an Etiologic Missense Variant in GRHL3.	Cleft palate	38 European ancestry cases, 835 European ancestry controls, 21 Hispanic cases, 626 Hispanic controls, 2 Asian ancestry cases, 161 Asian ancestry controls, 38 Indian ancestry controls, 15 Sub-Saharan African ancestry cases, 2 African American cases, 68 Sub-Saharan African ancestry controls, 5 African American controls, 1 African control, 4 controls, 114 European ancestry case-parent trios, 30 Hispanic case-parent trios, 39 East Asian case-parent trios, 1 South East Asian ancestry case-parent trio, 5 Sub-Saharan African case-parent trios	246 European ancestry cases, 1,685 European ancestry controls	Xp22.11		rs147101678-G	NR	5E-6	(EA)	6.85	[3.01-15.59]	Illumina [34985077] (imputed)	N
757	chrX	22574496	22574497	rs146125348	34424336	Mobuchon L	2021-08-23	J Natl Cancer Inst	Different Pigmentation Risk Loci for High-Risk Monosomy 3 and Low-Risk Disomy 3 Uveal Melanomas.	Uveal melanoma	1,142 European ancestry cases, 882 European ancestry controls	NA	Xp22.11		rs146125348-C	NR	5E-6		1.73	[1.37-2.19]	Illumina [7488175] (imputed)	N
759	chrX	22836668	22836669	rs6633657	34337005	Duan H	2021-07-17	Biomed Res Int	A Genome-Wide Association Study of Age-Related Hearing Impairment in Middle- and Old-Aged Chinese Twins.	Hearing function (2 kHz)	131 Chinese ancestry dizygotic twin pairs	NA	Xp22.11		rs6633657-?	NR	1E-8				Illumina [1365315]	N
759	chrX	22892076	22892077	rs5925696	20932654	Kerns SL	2010-10-05	Int J Radiat Oncol Biol Phys	Genome-wide association study to identify single nucleotide polymorphisms (SNPs) associated with the development of erectile dysfunction in African-American men after radiotherapy for prostate cancer.	Erectile dysfunction and prostate cancer treatment	27 African American cases, 52 African American controls	NA	Xp22.11	DDX53	rs5925696-?	0.26	3E-6		12.52	[NR]	Affymetrix [512497]	N
759	chrX	22908796	22908797	rs73198917	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	Xp22.11	NR	rs73198917-?	NR	1E-9	(AA)	1.5266	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
761	chrX	23169615	23169616	rs73468194	30898391	Lawrenson K	2019-03-19	Gynecol Oncol	Genome-wide association studies identify susceptibility loci for epithelial ovarian cancer in east Asian women.	Epithelial ovarian cancer	3,238 East Asian ancestry cases, 4,083 East Asian ancestry controls	NA	Xp22.11		rs73468194-?	NR	8E-6	(mucinous_all)	1.48		Illumina [11595112] (imputed)	N
762	chrX	23217294	23217295	rs6629562	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	Xp22.11	PTSD1	rs6629562-?		1E-8				Affymetrix, Illumina [NR] (imputed)	N
762	chrX	23285899	23285900	rs5971087	26926045	Adhikari K	2016-03-01	Nat Commun	A genome-wide association scan in admixed Latin Americans identifies loci influencing facial and scalp hair features.	Hair color	6,357 Latin American individuals	NA	Xp22.11	DDX53, PTCHD1, PTCHD1-AS	rs5971087-?	NR	5E-7				Illumina [9143600] (imputed)	N
762	chrX	23294919	23294920	rs972834	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Ovarian cancer (MTAG)	647 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	Xp22.11	Intergenic	rs972834-?		7E-6		1.03	[1.02-1.05]	Illumina [7645193] (imputed)	N
763	chrX	23340455	23340456	rs150798856	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	Xp22.11	NR	rs150798856-?	NR	8E-8	(AA)	1.3265	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
763	chrX	23374976	23374977	rs7051085	25897834	Biernacka JM	2015-04-21	Transl Psychiatry	The International SSRI Pharmacogenomics Consortium (ISPC): a genome-wide association study of antidepressant treatment response.	Response to serotonin reuptake inhibitors in major depressive disorder	298 European ancestry cases, 567 Asian ancestry cases, 1529 European and other ancestry cases	NA	Xp22.11	PTCHD1	rs7051085-?	NR	6E-6	(Response)	1.59	[NR]	Illumina [~ 7000000] (imputed)	N
763	chrX	23376570	23376571	rs12006913	30468137	Fabbri C	2018-11-23	Br J Psychiatry	Genome-wide association study of treatment-resistance in depression and meta-analysis of three independent samples.	Treatment resistant depression	1,378 European ancestry treatment resistant cases, 934 European ancestry responders to first treatment, 914 European ancestry non-responders to first treatment	NA	Xp22.11	PTCHD1	rs12006913-A	0.12	4E-6		2.13	[1.82-2.44]	Affymetrix, Illumina [7000000] (imputed)	N
763	chrX	23383443	23383444	rs5925760	22610502	Kennedy RB	2012-05-19	Hum Genet	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IFN-alpha)	Up to 512 European ancestry individuals, up to 199 African American individuals	NA	Xp22.11	PTCHD1	rs5925760-A		1E-7	(AA)			Illumina [NR]	N
763	chrX	23399500	23399501	rs73205368	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Arrhythmia	17,861 Japanese ancestry cases, 194,592 Japanese ancestry controls	NA	Xp22.11		rs73205368-C	NR	4E-15		1.0815452	[1.06057543872527-1.10292964400269]	Illumina [8919992] (imputed)	N
766	chrX	23776990	23776991	rs761804508	33482370	Kim SK	2021-01-19	J Shoulder Elbow Surg	A Genome Wide Association Study For Shoulder Impingement and Rotator Cuff Disease.	Shoulder impingement or rotator cuff tear	3,864 European ancestry shoulder impingement cases, 5,701 European ancestry rotator cuff tear cases, up to 614,568 European ancestry controls	NA	Xp22.11	ACOT9, SAT1	rs761804508-A	0.0069	4E-10		2.0062	NR	Affymetrix [up to 17556449] (imputed)	N
766	chrX	23791523	23791524	rs5970795	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	Xp22.11	ACOT9	rs5970795-?	NR	5E-7	(ribose 5 P; ribulose 5 P)	0.2561331	[0.16-0.36] unit decrease	Affymetrix [at least 2500000] (imputed)	N
767	chrX	23872813	23872813	rs11427219	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	Xp22.11		rs11427219-AT	NR	4E-9		0.0067	[0.0045-0.0089] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
768	chrX	24059174	24059175	rs6627995	28139693	Hoffmann TJ	2017-01-31	Nat Commun	Genome-wide association study of prostate-specific antigen levels identifies novel loci independent of prostate cancer.	Prostate-specific antigen levels	28,503 European ancestry individuals	2,716 Latino individuals, 2,518 East Asian ancestry individuals, 1,585 African American individuals, 6,193 European ancestry individuals (later diagnosed with prostate cancer), 5,603 European ancestry individuals	Xp22.11	EIF2S3, KLHL15	rs6627995-T	0.33	1E-13		0.0343829	[0.025-0.043] unit increase	Affymetrix [10109774] (imputed)	N
769	chrX	24148398	24148399	rs7889011	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	Xp22.11	SNORA68	rs7889011-A	0.619116	7E-12		0.013027674	[0.0093-0.0168] unit decrease	Affymetrix [93095623] (imputed)	N
769	chrX	24163286	24163287	rs5949232	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	Xp22.11	NR	rs5949232-A	0.372822	2E-8		0.00387762	[0.0025-0.0053] unit increase	Affymetrix [16582909] (imputed)	N
769	chrX	24163286	24163287	rs5949232	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	Xp22.11	NR	rs5949232-A	0.372822	2E-7		0.00401609	[0.0025-0.0056] unit increase	Affymetrix [16582965] (imputed)	N
769	chrX	24196196	24196197	rs2704827	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	Xp22.11		rs2704827-T	NR	4E-10		0.0089	[0.0062-0.0116] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
769	chrX	24209831	24209832	rs2704823	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	Xp22.11		rs2704823-T	NR	4E-8		0.009	[0.0059-0.0121] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
770	chrX	24253874	24253875	rs2073958	28922980	Konte B	2017-09-19	World J Biol Psychiatry	A genome-wide association study of early gamma-band response in a schizophrenia case-control sample.	Disturbances of the gamma-frequency band of electroencephalography measures in schizophrenia	74 European ancestry cases, 241 European ancestry controls	NA	Xp22.11	ZFX	rs2073958-C	NR	8E-6		0.252	[0.14-0.36] unit decrease	Illumina [304635]	N
771	chrX	24384177	24384178	rs140269604	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	Xp22.11	SUPT20HL1	rs140269604-T	0.0337	2E-6		0.3715	[0.22-0.52] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
771	chrX	24384177	24384178	rs140269604	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	Xp22.11	SUPT20HL1	rs140269604-T	0.0337	2E-6		0.3715	[0.22-0.52] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
771	chrX	24450147	24450148	rs59309986	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	Xp22.11	PDK3, SUPT20HL1, SUPT20HL2	rs59309986-?		8E-7	(additive)	0.595	[0.36-0.83] unit increase	Illumina [1492601] (imputed)	N
771	chrX	24450147	24450148	rs59309986	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	Xp22.11	PDK3, SUPT20HL1, SUPT20HL2	rs59309986-?		8E-6	(dominant)	0.384	[0.08-0.688] unit increase	Illumina [1492601] (imputed)	N
771	chrX	24450147	24450148	rs59309986	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	Xp22.11	PDK3, SUPT20HL1, SUPT20HL2	rs59309986-?		7E-6	(heterogeneous)	0.39	[0.22-0.56] unit increase	Illumina [1492601] (imputed)	N
773	chrX	24671332	24671333	rs5944665	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	Xp22.11		rs5944665-A	NR	3E-12		0.0114	[0.0083-0.0145] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
773	chrX	24731126	24731127	rs6628029	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	Xp22.11	POLA1	rs6628029-A	0.568191	2E-21		0.017969167	[0.014-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
775	chrX	24932892	24932893	rs7887866	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	Xp21.3	POLA1	rs7887866-G	0.620692	6E-10		0.012004906	[0.0082-0.0158] unit increase	Affymetrix [93095623] (imputed)	N
776	chrX	25089229	25089230	rs4634827	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Ease of getting up in the morning	385,949 European ancestry individuals	NA	Xp21.3	NR	rs4634827-G	0.3412	9E-10		0.0127	[0.0086-0.0168] unit increase	Affymetrix, Illumina [10862568] (imputed)	N
782	chrX	25853613	25853614	rs5944185	20932654	Kerns SL	2010-10-05	Int J Radiat Oncol Biol Phys	Genome-wide association study to identify single nucleotide polymorphisms (SNPs) associated with the development of erectile dysfunction in African-American men after radiotherapy for prostate cancer.	Erectile dysfunction and prostate cancer treatment	27 African American cases, 52 African American controls	NA	Xp21.3	MAGEB18	rs5944185-?	0.16	7E-6		10.5	[NR]	Affymetrix [512497]	N
786	chrX	26369898	26369899	rs6526555	23319000	Luykx JJ	2013-01-15	Mol Psychiatry	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA/MHPG ratio)	up to 398 European ancestry individuals	NA	Xp21.3	VENTXP1	rs6526555-C		4E-6		0.3006	unit increase	Illumina [5767231] (imputed)	N
786	chrX	26369898	26369899	rs6526555	23319000	Luykx JJ	2013-01-15	Mol Psychiatry	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (5-HIAA/ MHPG Ratio)	up to 398 European ancestry individuals	NA	Xp21.3	intergenic	rs6526555-C		5E-6		0.2804	unit increase	Illumina [5767231] (imputed)	N
788	chrX	26720938	26720939	rs5944573	30842574	Luciano M	2019-03-06	Mol Psychiatry	The influence of X chromosome variants on trait neuroticism.	Neuroticism	405,274 European ancestry individuals	NA	Xp21.3	NR	rs5944573-T	0.0672	8E-6		0.0162	[0.0091-0.0233] unit decrease	Illumina [1686693] (imputed)	N
793	chrX	27317186	27317186	rs765134394	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	Xp21.3		rs765134394-AACACACACACACACACACAC	NR	4E-8		0.0111	[0.0072-0.015] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
793	chrX	27377370	27377371	rs56988081	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	Xp21.3		rs56988081-G	NR	8E-9		0.0108	[0.0071-0.0145] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
797	chrX	27808446	27808447	rs149305693	31006051	Kharazmi M	2019-04-20	Calcif Tissue Int	A Genome-Wide Association Study of Bisphosphonate-Associated Atypical Femoral Fracture.	Bisphosphonate-associated atypical femoral fracture	50 European ancestry cases, 1 Chilean ancestry case, 4,891 European ancestry controls	NA	Xp21.3	intergenic	rs149305693-C	0.012	2E-6		8.11	[3.435-19.15]	Illumina [7585874] (imputed)	N
800	chrX	28233052	28233053	rs5971305	20932654	Kerns SL	2010-10-05	Int J Radiat Oncol Biol Phys	Genome-wide association study to identify single nucleotide polymorphisms (SNPs) associated with the development of erectile dysfunction in African-American men after radiotherapy for prostate cancer.	Erectile dysfunction and prostate cancer treatment	27 African American cases, 52 African American controls	NA	Xp21.3	WDR42B	rs5971305-?	0.02	8E-6		33.69	[NR]	Affymetrix [512497]	N
801	chrX	28432571	28432572	rs6630665	30842574	Luciano M	2019-03-06	Mol Psychiatry	The influence of X chromosome variants on trait neuroticism.	Neuroticism	405,274 European ancestry individuals	NA	Xp21.3	NR	rs6630665-A	0.2516	1E-8		0.0121	[0.008-0.0162] unit decrease	Illumina [1686693] (imputed)	N
802	chrX	28537638	28537638	rs11447950	30842574	Luciano M	2019-03-06	Mol Psychiatry	The influence of X chromosome variants on trait neuroticism.	Neuroticism	405,274 European ancestry individuals	NA	Xp21.3	NR	rs11447950-T	0.264	5E-7		0.0104	[0.0063-0.0145] unit decrease	Illumina [1686693] (imputed)	N
804	chrX	28717475	28717476	rs196974	26835600	Hu Y	2016-02-02	Nat Commun	GWAS of 89,283 individuals identifies genetic variants associated with self-reporting of being a morning person.	Morning vs. evening chronotype	38,937 European ancestry morning chronotype individuals, 50,346 European ancestry evening chronotype individuals	NA	Xp21.3	NR	rs196974-?	NR	3E-7				Illumina [7427422] (imputed)	N
804	chrX	28720135	28720136	rs196973	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	Xp21.3		rs196973-A	0.5395	6E-9		0.015	[0.011-0.019] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
804	chrX	28831151	28831152	rs6630771	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	Xp21.3	IL1RAPL1	rs6630771-G	NR	6E-6		0.0128885	[0.0073-0.0185] unit decrease	Illumina [13519193] (imputed)	N
808	chrX	29276211	29276212	rs5943630	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	Xp21.3	NR	rs5943630-?	NR	2E-9		1.05243	[1.04-1.07]	Affymetrix, Illumina [12447948] (imputed)	N
809	chrX	29417734	29417735	rs2294534	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (severe respiratory symptoms vs population)	1,128 European ancestry cases, 679,531 European ancestry controls, 245 Hispanic or Latin American cases, 94,237 Hispanic or Latin American controls, 74 Black or African American cases, 22,383 Black or African American controls	NA	Xp21.2		rs2294534-?	NR	5E-6		0.1894007	[0.11-0.27] unit decrease	Illumina [9906551] (imputed)	N
811	chrX	29640817	29640818	rs7890572	20838585	Smith EN	2010-09-09	PLoS Genet	Longitudinal genome-wide association of cardiovascular disease risk factors in the Bogalusa heart study.	Cardiovascular risk factors (age interaction)	525 European ancestry individuals	2,442 Finnish ancestry individuals	Xp21.2	IL1RAPL1, GK	rs7890572-G	NR	1E-7	(triglycerides)	0.97	[0.62-1.32] unit increase	Illumina [2173391] (imputed)	N
811	chrX	29737403	29737404	rs73456411	27723757	Jin Y	2016-11-01	Nat Genet	Genome-wide association studies of autoimmune vitiligo identify 23 new risk loci and highlight key pathways and regulatory variants.	Vitiligo	2,853 European ancestry cases and 37,405 European ancestry controls	1,827 European ancestry cases and 2,181 European ancestry controls	Xp21.2	IL1RAPL1	rs73456411-T	0.01306	7E-10		1.769	[1.47-2.13]	Illumina [8966411] (imputed)	N
812	chrX	29802538	29802539	rs5928362	33740410	Warrier V	2021-03-16	Lancet Psychiatry	Gene-environment correlations and causal effects of childhood maltreatment on physical and mental health: a genetically informed approach.	Childhood maltreatment	185,414 European ancestry individuals	NA	Xp21.2	NR	rs5928362-A	0.55	4E-8		0.021	[0.013-0.029] unit decrease	Affymetrix, Illumina [at least 500527] (imputed)	N
814	chrX	30062590	30062591	rs10126910	29594489	Apewokin S	2018-03-28	Support Care Cancer	Host genetic susceptibility to Clostridium difficile infections in patients undergoing autologous stem cell transplantation: a genome-wide association study.	Clostridium difficile infection in multiple myeloma	57 European ancestry cases, 589 European ancestry controls	NA	Xp21.2	NR	rs10126910-?		8E-6				Illumina [892589]	N
814	chrX	30119776	30119777	rs6628506	23319000	Luykx JJ	2013-01-15	Mol Psychiatry	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA/MHPG ratio)	up to 398 European ancestry individuals	NA	Xp21.2	intergenic	rs6628506-A		1E-6		0.3338	unit increase	Illumina [5767231] (imputed)	N
816	chrX	30331348	30331349	rs1034948	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	Xp21.2	NR	rs1034948-G	0.867117	4E-9		0.0183286	[0.012-0.024] unit increase	Affymetrix [16577424] (imputed)	N
816	chrX	30361709	30361710	rs2864934	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	Xp21.2		rs2864934-A	NR	2E-14		0.0099	[0.0074-0.0124] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
818	chrX	30573732	30573733	rs2532871	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	NA	Xp21.2	CXorf21	rs2532871-C		7E-8		1.32	[NR]	Illumina [> 644674] (imputed)	N
818	chrX	30577845	30577846	rs887369	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	2,018 European ancestry cases, 6,925 European ancestry controls	Xp21.2	CXorf21	rs887369-C		5E-10		1.15	[1.10-1.21]	Illumina [644674]	N
818	chrX	30639733	30639734	rs6631122	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulmonary fibrosis	1,566 European ancestry cases, 467,560 European ancestry controls, 126 East Asian ancestry cases, 176,974 East Asian ancestry controls	NA	Xp21.2		rs6631122-G	NR	3E-8		0.1573	[0.1-0.21] unit increase	Affymetrix, Illumina [25843031] (imputed)	N
818	chrX	30639733	30639734	rs6631122	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Interstitial lung disease	2,267 European ancestry cases, 467,560 European ancestry controls, 1,046 East Asian ancestry cases, 176,974 East Asian ancestry controls	NA	Xp21.2		rs6631122-G	NR	5E-8		0.1225	[0.079-0.166] unit increase	Affymetrix, Illumina [25843170] (imputed)	N
820	chrX	30896319	30896320	rs5972255	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 91,972 European ancestry controls	6,852 European ancestry cases, 193,117 European ancestry controls	Xp21.2	NR	rs5972255-T	0.241454521	2E-6		1.06779	[1.04-1.10]	Affymetrix, Illumina [20400945] (imputed)	N
820	chrX	30896319	30896320	rs5972255	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	Xp21.2	NR	rs5972255-T	NR	1E-8		1.032	[1.02-1.04]	Affymetrix, Illumina [29235255] (imputed)	N
822	chrX	31151136	31151137	rs17338346	34162658	Quinn MC	2021-06-23	Cancer Epidemiol Biomarkers Prev	Identification of a locus near ULK1 associated with progression-free survival in ovarian cancer.	Progression free survival in epithelial ovarian cancer treated with carboplatin and paclitaxel	2,352 European ancestry individuals	NA	Xp21.2	NR	rs17338346-T		1E-5		1.8884	[1.05-2.72] unit decrease	Illumina [12764477] (imputed)	N
823	chrX	31207043	31207044	rs2178539	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Major depressive disorder	10,865 European ancestry female cases, 12,753 European ancestry female controls, 5,105 European ancestry male cases, 12,231 European ancestry male controls	NA	Xp21.2	DMD	rs2178539-A	0.0442	1E-9	(male)	0.3827	[0.26-0.51] unit increase	NR [NR] (imputed)	N
823	chrX	31319326	31319327	rs111967111	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TENM3	5,360 Icelandic ancestry individuals	NA	Xp21.2		rs111967111-T	0.01185	1E-16		0.0886455	[0.068-0.11] unit increase	Illumina [7506463] (imputed)	N
825	chrX	31502292	31502293	rs745651645	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	Xp21.2	DMD	rs745651645-T	0.9979	4E-6		0.7322	[0.42-1.04] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
825	chrX	31502292	31502293	rs745651645	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	Xp21.2	DMD	rs745651645-T	0.9979	4E-6		0.7322	[0.42-1.04] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
827	chrX	31806026	31806027	rs6628643	30787463	Escala-Garcia M	2019-02-21	Br J Cancer	Genome-wide association study of germline variants and breast cancer-specific mortality.	Breast cancer specific mortality in estrogen receptor negative breast cancer	2,125 European ancestry cases, 14,047 European ancestry controls	NA	Xp21.1	NR	rs6628643-?	NR	2E-6		0.83806884	[0.78-0.90]	Affymetrix, Illumina [~ 10400000] (imputed)	N
828	chrX	31850710	31850711	rs2405153	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	163,835 East Asian ancestry individuals	NA	Xp21.1		rs2405153-C	0.711748	5E-8		0.0155707	[0.01-0.0212] unit increase	Illumina [13479178] (imputed)	N
828	chrX	31854781	31854782	rs1379871	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	Xp21.1		rs1379871-C	NR	2E-24		0.0148	[0.012-0.018] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
828	chrX	31854781	31854782	rs1379871	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	Xp21.1		rs1379871-C	NR	1E-8		0.0301	[0.02-0.04] unit increase	Affymetrix, Illumina [25845091] (imputed)	N
828	chrX	31854781	31854782	rs1379871	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	Xp21.1		rs1379871-C	NR	3E-26		0.0176	[0.014-0.021] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
828	chrX	31854781	31854782	rs1379871	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	Xp21.1		rs1379871-C	NR	5E-11		0.011	[0.0077-0.0143] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
828	chrX	31854781	31854782	rs1379871	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	Xp21.1	DMD	rs1379871-C	0.718	1E-8	(Japanese)	0.018	[0.012-0.024] unit increase	Illumina [6108953] (imputed)	N
829	chrX	32015375	32015376	rs16990008	22041458	Clark SL	2011-11-01	Psychol Med	Pharmacogenomic study of side-effects for antidepressant treatment options in STAR*D.	Response to anti-depressant treatment in major depressive disorder	1,151 European ancestry cases, 288 African American cases	NA	Xp21.1	DMD	rs16990008-C	0.02	2E-6	(Citalopram+Buspirone, Dizziness)			Affymetrix [421789]	N
829	chrX	32034269	32034270	rs1293906	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	Xp21.1	NR	rs1293906-T	0.1708	9E-6	(EA)	0.0408	[0.023-0.059] unit decrease	Illumina [~ 11800000] (imputed)	N
829	chrX	32092379	32092380	rs6631478	31388106	Sofer T	2019-08-06	Sci Rep	Variants Associated with the Ankle Brachial Index Differ by Hispanic/Latino Ethnic Group: a genome-wide association study in the Hispanic Community Health Study/Study of Latinos.	Ankle-brachial index	760 Central American ancestry individuals	up to 8,527 European ancestry individuals, 2,362 African American individuals, 1,447 Hispanic/Latino individuals	Xp21.1	DMD	rs6631478-T	0.69	7E-8		0.024	[0.016-0.032] unit decrease	Illumina [27887661] (imputed)	N
830	chrX	32213961	32213962	rs921896	35115690	Lopera-Maya EA	2022-02-03	Nat Genet	Effect of host genetics on the gut microbiome in 7,738 participants of the Dutch Microbiome Project.	Gut microbiota abundance (k_Bacteria.p_Proteobacteria.c_Gammaproteobacteria.o_Enterobacteriales.f_Enterobacteriaceae.g_Escherichia.s_Escherichia_unclassified)	7,738 European ancestry individuals	NA	Xp21.1		rs921896-T	0.5359785556793211	4E-8		0.0934248	[0.06-0.127] unit increase	Illumina [5584686] (imputed)	N
830	chrX	32213961	32213962	rs921896	24047446	Schosser A	2013-09-19	World J Biol Psychiatry	Genome-wide association study of co-occurring anxiety in major depression.	Anxiety in major depressive disorder	1,080 European ancestry cases, 442 European ancestry controls	NA	Xp21.1	DMD	rs921896-C	0.47	4E-6	(Quantitative)	0.47	[NR] unit increase	Illumina [471581]	N
830	chrX	32225254	32225255	rs1456737	20889312	Wang KS	2010-10-01	Schizophr Res	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	Xp21.1	NR	rs1456737-?	NR	5E-6		1.2492	[NR]	Affymetrix [722112]	N
830	chrX	32227080	32227081	rs2685902	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	Xp21.1	FTHL17	rs2685902-?	NR	2E-7	(inosine)	0.19914211	[0.12-0.27] unit increase	Affymetrix [at least 2500000] (imputed)	N
830	chrX	32235148	32235149	rs16990169	26379185	Garcia-Etxebarria K	2015-09-17	PLoS One	No Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity.	Mild influenza (H1N1) infection	107 European ancestry mild cases, 549 European ancestry population controls	NA	Xp21.1	DMD	rs16990169-?	0.006579	5E-14		14.55	[13.65-15.45]	Affymetrix [547296]	N
830	chrX	32235148	32235149	rs16990169	26379185	Garcia-Etxebarria K	2015-09-17	PLoS One	No Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity.	Influenza A (H1N1) infection	49 European ancestry severe cases, 107 European ancestry mild cases, 549 European ancestry population controls	NA	Xp21.1	DMD	rs16990169-?	0.006579	4E-11		11.05	[4.565-26.74]	Affymetrix [547296]	N
831	chrX	32283491	32283492	rs73460075	28081371	Sanders AE	2017-01-12	J Dent Res	GWAS Identifies New Loci for Painful Temporomandibular Disorder: Hispanic Community Health Study/Study of Latinos.	Temporomandibular joint disorder	769 Hispanic cases, 9,384 Hispanic controls	768 European ancestry cases, 4,845 European ancestry controls, 144 Hispanic/Latin American cases, 492 Hispanic/Latin American controls, 999 cases, 2,031 controls	Xp21.1	DMD	rs73460075-C	0.03600000000000003	4E-8	(Hispanic)	1.7761989		Illumina [2100000] (imputed)	N
831	chrX	32306825	32306826	rs331334	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 15, philtrum width)	2,187 European ancestry individuals	NA	Xp21.1	NR	rs331334-T	0.4089	1E-6		0.1273	[0.076-0.178] unit decrease	Illumina [10677593] (imputed)	N
833	chrX	32574102	32574103	rs145835909	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	Xp21.1	DMD	rs145835909-G	NR	5E-6	(men)	0.168055	[0.096-0.24] unit increase	Illumina [13520550] (imputed)	N
833	chrX	32583085	32583086	rs145455135	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	Xp21.1	NR	rs145455135-A	0.0208	9E-6	(EA)	0.1571	[0.088-0.227] unit decrease	Illumina [~ 11800000] (imputed)	N
839	chrX	33412145	33412146	rs145908860	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mononucleosis	17,457 European ancestry cases, 68,446 European ancestry controls	NA	Xp21.1	NR	rs145908860-?	NR	9E-6		0.5476	[0.28-0.81] unit increase	Illumina [at least 560000] (imputed)	N
840	chrX	33470532	33470532	rs34097398	30898391	Lawrenson K	2019-03-19	Gynecol Oncol	Genome-wide association studies identify susceptibility loci for epithelial ovarian cancer in east Asian women.	Epithelial ovarian cancer	3,238 East Asian ancestry cases, 4,083 East Asian ancestry controls	NA	Xp21.1		rs34097398-?	NR	4E-7	(ser_lg_lmp)	2.1		Illumina [11595112] (imputed)	N
842	chrX	33708959	33708960	rs145793786	29703947	Jawinski P	2018-04-27	Mol Psychiatry	Human brain arousal in the resting state: a genome-wide association study.	Resting-state electroencephalogram vigilance	1,877 European ancestry individuals	NA	Xp21.1	intergenic	rs145793786-A	0.98	2E-6	(Stability score)	3.786	[2.25-5.32] unit increase	Affymetrix [8042262] (imputed)	N
842	chrX	33784062	33784063	rs5928363	24057671	Chimusa ER	2013-09-18	Hum Mol Genet	Genome-wide association study of ancestry-specific TB risk in the South African Coloured population.	Tuberculosis	642 South African coloured cases, 91 South African coloured controls	NA	Xp21.1	intergenic	rs5928363-C	0.98	4E-6		8.3333	[NR]	Affymetrix [up to 4467279] (imputed)	N
842	chrX	33793452	33793453	rs151235341	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	Xp21.1		rs151235341-T	NR	1E-7		3.4942	[2.23-4.76] unit increase	Illumina [NR] (imputed)	N
842	chrX	33811840	33811841	rs113065570	24024966	Teumer A	2013-08-14	J Clin Periodontol	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (Mean PAL)	up to 4,032 European ancestry individuals	NA	Xp21.1	FAM47A	rs113065570-T	0.32	8E-6	(Age 20-60 years)	0.0469	[0.026-0.067] unit decrease	Affymetrix, Illumina [up to 17585496] (imputed)	N
844	chrX	33974932	33974933	rs72626817	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	Xp21.1		rs72626817-G	NR	7E-8		3.4589	[2.24-4.68] unit increase	Illumina [NR] (imputed)	N
845	chrX	34102711	34102712	rs1507220	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	Xp21.1	FAM47A	rs1507220-A	0.3013	6E-10		6.183	[6.18-6.19] z-score decrease	Affymetrix, Illumina [10000000] (imputed)	N
847	chrX	34351621	34351622	rs11095332	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	Xp21.1	TMEM47	rs11095332-?	NR	8E-6	(LPC 20:5)	0.17135374	[0.096-0.247] unit decrease	Affymetrix [at least 2500000] (imputed)	N
847	chrX	34382828	34382829	rs5928516	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Measles	38,219 European ancestry cases, 47,279 European ancestry controls	NA	Xp21.1	NR	rs5928516-?	NR	7E-6		0.0602	[0.034-0.086] unit increase	Illumina [at least 560000] (imputed)	N
847	chrX	34384463	34384464	rs12845470	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	Xp21.1	FAM47A	rs12845470-A	0.4619	5E-14		7.521	[7.52-7.52] z-score increase	Affymetrix, Illumina [10000000] (imputed)	N
851	chrX	34892502	34892503	rs4271113	23412934	Gourraud PA	2013-02-13	Brain	A genome-wide association study of brain lesion distribution in multiple sclerosis.	Multiple sclerosis	284 European ancestry individuals		Xp21.1	TMEM47	rs4271113-?		9E-7	(Cluxel minimum distance)			Illumina [208975]	N
853	chrX	35141505	35141506	rs12863455	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	Xp21.1	NR	rs12863455-?	NR	6E-6				Affymetrix [NR]	N
855	chrX	35511503	35511504	rs12833114	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TENM3	5,360 Icelandic ancestry individuals	NA	Xp21.1		rs12833114-G	0.01582	5E-17		0.0779307	[0.06-0.096] unit increase	Illumina [7506463] (imputed)	N
863	chrX	36548058	36548059	rs16998563	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	Xp21.1	NR	rs16998563-?	NR	9E-6		1.2716	[0.58-1.96] unit increase	Illumina [at least 560000] (imputed)	N
872	chrX	37700827	37700828	rs4506367	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Uterine fibroids (MTAG)	5,236 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	Xp11.4	Intergenic	rs4506367-?		7E-6		1.03	[1.02-1.04]	Illumina [7645193] (imputed)	N
873	chrX	37854326	37854327	rs3859931	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	Xp11.4	NR	rs3859931-T	NR	4E-9		0.02	unit decrease	Affymetrix [at least 7091467] (imputed)	N
873	chrX	37854326	37854327	rs3859931	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	Xp11.4	NR	rs3859931-T	0.584	9E-9	(EA)	0.022	unit decrease	Affymetrix [at least 7091467] (imputed)	N
873	chrX	37854726	37854727	rs872690	20932654	Kerns SL	2010-10-05	Int J Radiat Oncol Biol Phys	Genome-wide association study to identify single nucleotide polymorphisms (SNPs) associated with the development of erectile dysfunction in African-American men after radiotherapy for prostate cancer.	Erectile dysfunction and prostate cancer treatment	27 African American cases, 52 African American controls	NA	Xp11.4	SYTL5	rs872690-?	0.03	9E-6		11.78	[NR]	Affymetrix [512497]	N
874	chrX	37999651	37999652	rs56156506	23568457	Wade TD	2013-04-09	Int J Eat Disord	Genetic variants associated with disordered eating.	Anorexia nervosa	237 European ancestry female cases, 2,287 European ancestry female controls	NA	Xp11.4	SYTL5	rs56156506-A	0.813	1E-6		0.053	[0.031-0.075] unit decrease	Illumina [6150213] (imputed)	N
874	chrX	38009120	38009121	rs35318931	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Varicose veins	22,037 European ancestry cases, 437,665 European ancestry controls, 474 East Asian ancestry cases, 178,252 East Asian ancestry controls	NA	Xp11.4		rs35318931-A	NR	1E-13		0.1284	[0.094-0.163] unit decrease	Affymetrix, Illumina [25842955] (imputed)	N
874	chrX	38009120	38009121	rs35318931	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Inguinal hernia	16,725 European ancestry cases, 428,356 European ancestry controls, 1,664 East Asian ancestry cases, 177,062 East Asian ancestry controls	NA	Xp11.4		rs35318931-A	NR	8E-18		0.1326	[0.1-0.16] unit decrease	Affymetrix, Illumina [25841416] (imputed)	N
874	chrX	38009120	38009121	rs35318931	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	Xp11.4		rs35318931-A	NR	9E-24		0.024	[0.019-0.029] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
874	chrX	38009120	38009121	rs35318931	33888516	Zheng T	2021-04-22	Gut	Genome-wide analysis of 944 133 individuals provides insights into the etiology of haemorrhoidal disease.	Haemorrhoidal disease	218,920 European ancestry cases, 725,213 European ancestry controls	NA	Xp11.4	SRPX	rs35318931-?	0.0804	3E-11		0.96	[0.95-0.97]	Affymetrix, Illumina [8494288] (imputed)	N
874	chrX	38009120	38009121	rs35318931	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	Xp11.4	NR	rs35318931-G	0.911533	1E-11		0.00770859	[0.0053-0.0101] unit increase	Affymetrix [16582909] (imputed)	N
874	chrX	38009120	38009121	rs35318931	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	Xp11.4	NR	rs35318931-G	0.911533	4E-9		0.00742742	[0.0048-0.0101] unit increase	Affymetrix [16582965] (imputed)	N
876	chrX	38151041	38151042	rs75759941	31095341	Kerns SL	2019-05-16	J Natl Cancer Inst	Radiogenomics Consortium Genome-Wide Association Study Meta-analysis of Late Toxicity after Prostate Cancer Radiotherapy.	Response to radiotherapy in prostate cancer (overall toxicity)	3,871 European ancestry individuals	NA	Xp11.4	NR	rs75759941-?	0.05	9E-8		0.25	[0.16-0.34] unit increase	Affymetrix, Illumina [~ 6000000] (imputed)	N
876	chrX	38215709	38215710	rs138623599	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Rubella	12,000 European ancestry cases, 71,597 European ancestry controls	NA	Xp11.4	NR	rs138623599-?	NR	4E-6		0.2848	[0.17-0.4] unit decrease	Illumina [at least 560000] (imputed)	N
878	chrX	38507000	38507001	rs67035249	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	Xp11.4		rs67035249-T	NR	3E-10		0.0116	[0.0081-0.0151] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
878	chrX	38507000	38507001	rs67035249	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	Xp11.4	TM4SF2, TSPAN7	rs67035249-T	0.300136	8E-9		0.011572711	[0.0076-0.0155] unit increase	Affymetrix [93095623] (imputed)	N
883	chrX	39130091	39130092	rs5917288	28173075	Niu N	2016-09-11	Hum Mol Genet	Metformin pharmacogenomics: a genome-wide association study to identify genetic and epigenetic biomarkers involved in metformin anticancer response using human lymphoblastoid cell lines.	Response to metformin (IC50)	up to 96 African American lymphoblastoid cell lines, up to 96 Han Chinese American lymphoblastoid cell lines, up to 96 European ancestry lymphoblastoid cell lines	NA	Xp11.4	MID1IP1, GAPDHP1	rs5917288-?	NR	2E-6			NR	Affymetrix, Illumina [~ 6700000] (imputed)	N
885	chrX	39437328	39437329	rs7061752	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 3)	19,670 European ancestry individuals	NA	Xp11.4		rs7061752-?	NR	1E-8				NR [9705931] (imputed)	N
887	chrX	39678186	39678187	rs111976051	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	Xp11.4		rs111976051-T	0.0189780000000001	2E-13		0.05310568	[0.039-0.067] unit increase	Affymetrix [93095623] (imputed)	N
887	chrX	39679062	39679063	rs5963692	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NOG	5,366 Icelandic ancestry individuals	NA	Xp11.4		rs5963692-T	0.3878	2E-12		0.113686	[0.082-0.145] unit increase	Illumina [7506463] (imputed)	N
887	chrX	39708723	39708724	rs3002417	31676865	Klarin D	2019-11-01	Nat Genet	Genome-wide association analysis of venous thromboembolism identifies new risk loci and genetic overlap with arterial vascular disease.	Venous thromboembolism	23,151 European ancestry cases, 553,439 European ancestry controls, 2,261 African American cases, 49,400 African American controls, 654 Hispanic cases, 21,214 Hispanic controls	17,672 cases, 167,295 controls	Xp11.4	BCOR	rs3002417-T	0.5281	2E-13		1.06	[1.04-1.08]	Affymetrix [up to 34000000] (imputed)	N
887	chrX	39710194	39710195	rs3002416	35023831	Chong M	2022-01-13	Elife	GWAS and ExWAS of blood Mitochondrial DNA copy number identifies 71 loci and highlights a potential causal role in dementia.	Mitochondrial DNA copy number	395,718 British, Irish, Other White, South Asian, African ancestry individuals	NA	Xp11.4	NR	rs3002416-T	0.406887	7E-9		0.0107	[0.007-0.0144] unit decrease	Affymetrix [23037915] (imputed)	N
887	chrX	39710194	39710195	rs3002416	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	Xp11.4		rs3002416-T	NR	9E-83		0.0316	[0.028-0.035] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
887	chrX	39710194	39710195	rs3002416	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	Xp11.4		rs3002416-T	0.648637	5E-10		0.0173753	[0.012-0.023] unit increase	Illumina [13478928] (imputed)	N
887	chrX	39710194	39710195	rs3002416	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	Xp11.4	MIR1587	rs3002416-T	0.411634	3E-142		0.050285105	[0.046-0.054] unit decrease	Affymetrix [93095623] (imputed)	N
887	chrX	39710194	39710195	rs3002416	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	Xp11.4	MIR1587	rs3002416-T	0.411604	3E-80		0.037590172	[0.034-0.041] unit increase	Affymetrix [93095623] (imputed)	N
887	chrX	39710194	39710195	rs3002416	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	Xp11.4	MIR1587	rs3002416-T	0.411627	1E-311		0.07468158	[0.071-0.079] unit decrease	Affymetrix [93095623] (imputed)	N
887	chrX	39710194	39710195	rs3002416	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 157,769 European ancestry controls	NA	Xp11.4	NR	rs3002416-?	NR	2E-7		0.055	[0.034-0.076] unit decrease	Affymetrix, Illumina [12923718] (imputed)	N
887	chrX	39710194	39710195	rs3002416	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Platelet count	108,208 Japanese ancestry individuals	NA	Xp11.4	MIR3937, BCOR	rs3002416-?	NR	9E-11		0.02383	[0.017-0.031] unit increase novel	Illumina [6108953] (imputed)	N
888	chrX	39751717	39751718	rs10218285	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	Xp11.4	BCOR	rs10218285-?		4E-14				Affymetrix, Illumina [NR] (imputed)	N
888	chrX	39788857	39788858	rs5963711	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	Xp11.4	NR	rs5963711-G		4E-9		0.06	[0.04-0.08] unit increase	NR [NR]	N
889	chrX	39885629	39885630	rs17145638	23470693	Zeng Z	2013-03-07	J Dent Res	Genome-wide association studies of pit-and-fissure- and smooth-surface caries in permanent dentition.	Pit-and-Fissure caries	996 European ancestry individuals		Xp11.4	BCOR	rs17145638-C	0.1169	2E-7		2.329	[NR] unit decrease	Illumina [1200000] (imputed)	N
890	chrX	40065783	40065784	rs5963756	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	Xp11.4	ATP6AP2	rs5963756-?	NR	2E-6	(TAG 56:9)	0.2798664	[0.16-0.4] unit decrease	Affymetrix [at least 2500000] (imputed)	N
891	chrX	40125951	40125952	rs5963774	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	Xp11.4	RP11-320G24.1	rs5963774-A	0.678456	7E-11		0.01301494	[0.0091-0.0169] unit decrease	Affymetrix [93095623] (imputed)	N
895	chrX	40740146	40740147	rs188679219	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	BAFF-R on IgD+ CD38+ B cell	3,656 Sardinian (founder/genetic isolate) ancestry individuals	NA	Xp11.4		rs188679219-A	0.14299	3E-8		0.1637	[0.11-0.22] unit increase	Illumina [18238081] (imputed)	N
896	chrX	40764756	40764757	rs12845494	27322543	Gormley P	2016-06-20	Nat Genet	Meta-analysis of 375,000 individuals identifies 38 susceptibility loci for migraine.	Migraine	59,674 European ancestry cases, 316,078 European ancestry controls	NA	Xp11.4	MED14, USP9X	rs12845494-?	0.73	2E-8		1.0416667	[1.03-1.05]	Affymetrix, Illumina, Perlegen [8094889] (imputed)	N
896	chrX	40811711	40811712	rs5918067	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	Xp11.4		rs5918067-A	NR	2E-13		0.0143	[0.011-0.018] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
896	chrX	40844406	40844407	rs5918077	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	Xp11.4	NR	rs5918077-A	0.460659	3E-20		0.019481024	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
896	chrX	40844406	40844407	rs5918077	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	Xp11.4	NR	rs5918077-A	0.460673	2E-19		0.01905449	[0.015-0.023] unit increase	Affymetrix [93095623] (imputed)	N
896	chrX	40844744	40844745	rs186351547	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	Xp11.4		rs186351547-G	0.203372	3E-17		0.019671483	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
896	chrX	40844744	40844745	rs186351547	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	Xp11.4		rs186351547-G	0.203265	1E-36		0.029854212	[0.025-0.034] unit increase	Affymetrix [93095623] (imputed)	N
896	chrX	40844744	40844745	rs186351547	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	Xp11.4		rs186351547-G	0.203183	3E-118		0.06158563	[0.056-0.067] unit decrease	Affymetrix [93095623] (imputed)	N
896	chrX	40846525	40846526	rs112563712	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	Xp11.4	NR	rs112563712-G	0.199868	2E-168		0.0731955	[0.068-0.078] unit decrease	Affymetrix [93095623] (imputed)	N
896	chrX	40846525	40846526	rs112563712	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	Xp11.4		rs112563712-G	0.199831	5E-203		0.08027844	[0.075-0.085] unit decrease	Affymetrix [93095623] (imputed)	N
896	chrX	40846525	40846526	rs112563712	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	Xp11.4		rs112563712-G	0.199822	5E-207		0.0810843	[0.076-0.086] unit decrease	Affymetrix [93095623] (imputed)	N
896	chrX	40847254	40847255	rs5963214	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	Xp11.4		rs5963214-T	0.46053	3E-23		0.021127945	[0.017-0.025] unit increase	Affymetrix [93095623] (imputed)	N
896	chrX	40847851	40847852	rs58196315	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	Xp11.4	NR	rs58196315-C	0.199762	3E-171		0.07384637	[0.069-0.079] unit decrease	Affymetrix [93095623] (imputed)	N
896	chrX	40848155	40848156	rs11797190	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	Xp11.4		rs11797190-T	0.460414	8E-30		0.023905162	[0.02-0.028] unit increase	Affymetrix [93095623] (imputed)	N
896	chrX	40848155	40848156	rs11797190	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	Xp11.4		rs11797190-T	0.46043	2E-29		0.023714293	[0.02-0.028] unit increase	Affymetrix [93095623] (imputed)	N
898	chrX	41113079	41113080	rs5918137	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	Xp11.4	NR	rs5918137-C	0.155981	1E-9		0.015700899	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
898	chrX	41113079	41113080	rs5918137	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	Xp11.4	NR	rs5918137-C	0.155975	5E-10		0.01605729	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
898	chrX	41113079	41113080	rs5918137	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	Xp11.4		rs5918137-C	0.156028	1E-14		0.019827776	[0.015-0.025] unit increase	Affymetrix [93095623] (imputed)	N
898	chrX	41113209	41113210	rs12559140	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	Xp11.4		rs12559140-G	0.155643	2E-12		0.018263536	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
898	chrX	41113209	41113210	rs12559140	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	Xp11.4		rs12559140-G	0.155691	5E-15		0.020156931	[0.015-0.025] unit increase	Affymetrix [93095623] (imputed)	N
899	chrX	41202272	41202273	rs6610546	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	Xp11.4		rs6610546-G	NR	5E-8		0.0099	[0.0064-0.0134] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
899	chrX	41202272	41202273	rs6610546	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	Xp11.4	DDX3X	rs6610546-?		5E-9				Affymetrix, Illumina [NR] (imputed)	N
900	chrX	41289585	41289586	rs150612032	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Perceived unattractiveness to mosquitoes	16,576 European ancestry individuals	NA	Xp11.4	intergenic	rs150612032-T	NR	8E-6		0.354303	[0.2-0.51] unit increase	Illumina [7433384] (imputed)	N
912	chrX	42881872	42881873	rs144199732	30898391	Lawrenson K	2019-03-19	Gynecol Oncol	Genome-wide association studies identify susceptibility loci for epithelial ovarian cancer in east Asian women.	Epithelial ovarian cancer	3,238 East Asian ancestry cases, 4,083 East Asian ancestry controls	NA	Xp11.3		rs144199732-?	NR	7E-7	(lmp)	2.86		Illumina [11595112] (imputed)	N
917	chrX	43607032	43607033	rs3027409	19247474	Caporaso N	2009-02-27	PLoS One	Genome-wide and candidate gene association study of cigarette smoking behaviors.	Smoking behavior	2,617 European ancestry smokers, 1,725 European ancestry controls	NA	Xp11.3	MAOA	rs3027409-?	0.95	7E-6	(CPDBI)	1.73	[NR]	Illumina [~ 518000]	N
919	chrX	43824857	43824858	rs5906307	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Varicose veins	22,037 European ancestry cases, 437,665 European ancestry controls, 474 East Asian ancestry cases, 178,252 East Asian ancestry controls	NA	Xp11.3		rs5906307-G	NR	2E-13		0.0704	[0.052-0.089] unit increase	Affymetrix, Illumina [25842955] (imputed)	N
919	chrX	43835792	43835793	rs5952416	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	Xp11.3	NDP	rs5952416-C	0.676086	7E-46		0.0334162	[0.029-0.038] unit increase	NR [13737936] (imputed)	N
919	chrX	43835792	43835793	rs5952416	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	Xp11.3		rs5952416-?	NR	1E-52		0.0271972	[0.024-0.031] unit increase	Affymetrix [20259828] (imputed)	N
919	chrX	43835792	43835793	rs5952416	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	Xp11.3	NDP	rs5952416-A	0.3201	1E-11	(men)	0.05653	[0.04-0.073] unit decrease	NR [17166351] (imputed)	N
919	chrX	43835792	43835793	rs5952416	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	Xp11.3	NDP	rs5952416-A	0.3199	4E-15		0.03587	[0.027-0.045] unit decrease	NR [17166351] (imputed)	N
919	chrX	43835792	43835793	rs5952416	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	Xp11.3	NDP	rs5952416-A	0.3198	5E-7	(women)	0.02721	[0.017-0.038] unit decrease	NR [17166351] (imputed)	N
919	chrX	43836402	43836403	rs5905588	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	145,505 East Asian ancestry individuals	NA	Xp11.3		rs5905588-T	0.306547	2E-8		0.0163425	[0.011-0.022] unit increase	Illumina [13477770] (imputed)	N
919	chrX	43836402	43836403	rs5905588	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	145,502 East Asian ancestry individuals	NA	Xp11.3		rs5905588-T	0.306526	6E-9		0.017457	[0.012-0.023] unit increase	Illumina [13477767] (imputed)	N
919	chrX	43842089	43842090	rs12832436	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	Xp11.3		rs12832436-?	NR	4E-54		0.027613	[0.024-0.031] unit increase	Affymetrix [20259828] (imputed)	N
919	chrX	43844599	43844600	rs6609273	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean arterial pressure	136,482 Japanese ancestry individuals	NA	Xp11.3	NDP, EFHC2	rs6609273-?	NR	4E-8		0.01832	[0.012-0.025] unit increase novel	Illumina [6108953] (imputed)	N
919	chrX	43877474	43877475	rs5906426	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	Xp11.3	NDP	rs5906426-A	0.366423	9E-13		0.0162826	[0.012-0.021] unit decrease	NR [13737936] (imputed)	N
920	chrX	43930088	43930089	rs191792526	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	Xp11.3	NR	rs191792526-?	NR	4E-7	(AA)	1.4223	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
920	chrX	43939977	43939978	rs12558081	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Intraocular pressure	101,939 European ancestry cases	NA	Xp11.3	NR	rs12558081-G		4E-12		0.09	[0.07-0.11] unit increase	NR [NR]	N
920	chrX	43940826	43940827	rs17146835	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	23,963 European ancestry cases, 306,942 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	43,254 European ancestry cases, 1,471,118 European ancestry controls	Xp11.3	NDP, EFHC2	rs17146835-T	NR	6E-20		0.058	unit decrease	Illumina [15409056] (imputed)	N
920	chrX	43946620	43946621	rs67499600	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	16,677 European ancestry cases, 199,580 European ancestry controls	7,286 European ancestry cases, 107,362 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	Xp11.3	NDP, EFHC2	rs67499600-A	NR	4E-8		0.925982	[0.9-0.95]	Affymetrix, Illumina [14822926] (imputed)	N
920	chrX	44022876	44022877	rs144107579	33539483	Li Z	2021-02-04	PLoS One	Bivariate genome-wide association study (GWAS) of body mass index and blood pressure phenotypes in northern Chinese twins.	Body mass index and diastolic blood pressure (bivariate analysis)	274 Chinese ancestry dizygotic twins	NA	Xp11.3	EFHC2	rs144107579-?	NR	5E-6				Illumina [7401356] (imputed)	N
923	chrX	44319939	44319940	rs55952756	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	Xp11.3	NR	rs55952756-?	NR	2E-6	(Native Hawaiian)	0.7218	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
923	chrX	44350342	44350343	rs138440928	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 22)	2,187 European ancestry individuals	NA	Xp11.3	FUNDC1	rs138440928-A	0.01104	2E-8		0.6502	[0.42-0.88] unit increase	Illumina [10677593] (imputed)	N
923	chrX	44400185	44400186	rs6610953	18957941	Terracciano A	2008-11-24	Mol Psychiatry	Genome-wide association scan for five major dimensions of personality.	Personality dimensions	3,972 Sardinian individuals	3,903 individuals	Xp11.3	FUNDC1	rs6610953-G	0.85	6E-6	(openness)	0.15	[NR] s.d. increase	Affymetrix [362129]	N
926	chrX	44817749	44817750	rs5952279	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	Xp11.3	NR	rs5952279-A	0.178435	1E-10		0.00550072	[0.0037-0.0073] unit increase	Affymetrix [16582909] (imputed)	N
926	chrX	44817749	44817750	rs5952279	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	Xp11.3	NR	rs5952279-A	0.178435	2E-6		0.00453251	[0.0026-0.0065] unit increase	Affymetrix [16582965] (imputed)	N
933	chrX	45634576	45634577	rs56976399	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	Xp11.3		rs56976399-A	NR	3E-8		0.008	[0.0053-0.0107] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
933	chrX	45634576	45634577	rs56976399	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Inguinal hernia	16,725 European ancestry cases, 428,356 European ancestry controls, 1,664 East Asian ancestry cases, 177,062 East Asian ancestry controls	NA	Xp11.3		rs56976399-A	NR	8E-13		0.0649	[0.047-0.083] unit increase	Affymetrix, Illumina [25841416] (imputed)	N
933	chrX	45634576	45634577	rs56976399	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	Xp11.3		rs56976399-A	NR	9E-24		0.0113	[0.0091-0.0135] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
934	chrX	45777088	45777089	rs7890889	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	Xp11.3		rs7890889-A	NR	2E-10		0.0131	[0.009-0.0172] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
938	chrX	46310140	46310141	rs367724086	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	Xp11.3		rs367724086-C	NR	4E-10		0.0108	[0.0075-0.0141] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
938	chrX	46343322	46343322	rs766404766	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	Xp11.3		rs766404766-GT	NR	4E-10		0.0117	[0.008-0.0154] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
938	chrX	46343322	46343322	rs766404766	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	Xp11.3		rs766404766-GT	NR	3E-9		0.0106	[0.0071-0.0141] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
938	chrX	46343322	46343322	rs766404766	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	Xp11.3	KRBOX4	rs766404766-GT	0.311726	4E-11		0.013530082	[0.0095-0.0175] unit increase	Affymetrix [93095623] (imputed)	N
939	chrX	46463222	46463223	rs5906242	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	Xp11.3	SLC9A7	rs5906242-A	0.322843	7E-9		0.011396934	[0.0075-0.0153] unit increase	Affymetrix [93095623] (imputed)	N
939	chrX	46486160	46486161	rs73200263	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	Xp11.3		rs73200263-A	NR	1E-13		0.0142	[0.01-0.018] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
939	chrX	46486160	46486161	rs73200263	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	Xp11.3		rs73200263-A	NR	6E-16		0.0162	[0.012-0.02] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
939	chrX	46504201	46504202	rs6521135	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	Xp11.3		rs6521135-T	NR	9E-11		0.0104	[0.0073-0.0135] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
939	chrX	46506997	46506998	rs17327362	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	Xp11.3	SLC9A7	rs17327362-G	0.336538	1E-15		0.015547688	[0.012-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
939	chrX	46506997	46506998	rs17327362	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	Xp11.3	SLC9A7	rs17327362-G	0.336534	8E-18		0.016775219	[0.013-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
939	chrX	46514397	46514397	rs200298074	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	Xp11.3	SLC9A7	rs200298074-TTTTC	0.347991	5E-9		0.011713215	[0.0078-0.0156] unit decrease	Affymetrix [93095623] (imputed)	N
940	chrX	46557820	46557821	rs5906256	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	Xp11.3	SLC9A7	rs5906256-T	0.293973	1E-14		0.015628316	[0.012-0.02] unit increase	Affymetrix [93095623] (imputed)	N
940	chrX	46557820	46557821	rs5906256	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	Xp11.3	SLC9A7	rs5906256-T	0.293951	1E-13		0.014948815	[0.011-0.019] unit increase	Affymetrix [93095623] (imputed)	N
940	chrX	46607853	46607854	rs5906271	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	Xp11.3		rs5906271-G	NR	1E-10		0.0123	[0.0086-0.016] unit increase	Affymetrix, Illumina [20529698] (imputed)	N
941	chrX	46671483	46671484	rs148729122	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CRYBB2	5,334 Icelandic ancestry individuals	NA	Xp11.3		rs148729122-A	0.01132	3E-12		0.145811	[0.1-0.19] unit increase	Illumina [7506463] (imputed)	N
943	chrX	46946403	46946404	rs12556310	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	Xp11.3		rs12556310-G	NR	4E-8		0.0104	[0.0067-0.0141] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
943	chrX	47023434	47023434	rs532201997	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (severe respiratory symptoms vs population)	1,128 European ancestry cases, 679,531 European ancestry controls, 245 Hispanic or Latin American cases, 94,237 Hispanic or Latin American controls, 74 Black or African American cases, 22,383 Black or African American controls	NA	Xp11.3		rs532201997-?	NR	5E-6		0.9256902	[0.53-1.32] unit increase	Illumina [9906551] (imputed)	N
943	chrX	47023434	47023434	rs532201997	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (hospitalized covid vs population)	613 European ancestry cases, 680,416 European ancestry controls, 140 Hispanic or Latin American cases, 94,327 Hispanic or Latin American controls, 49 Black or African American cases, 22,410 Black or African American controls	NA	Xp11.3		rs532201997-?	NR	1E-6		1.0983605	[0.66-1.54] unit increase	Illumina [9875426] (imputed)	N
944	chrX	47111663	47111664	rs5906362	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	Xp11.3		rs5906362-C	NR	1E-12		0.0102	[0.0075-0.0129] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
944	chrX	47174275	47174276	rs6611365	20395239	Macgregor S	2010-04-15	Hum Mol Genet	Genome-wide association identifies ATOH7 as a major gene determining human optic disc size.	Optic nerve measurement (disc area)	1,368 European ancestry twins from 666 families	848 European ancestry twins from 531 families	Xp11.3	ZNF157	rs6611365-G	NR	4E-7		0.178	[0.096-0.260] unit increase	Illumina [~ 2740000] (imputed)	N
950	chrX	47906479	47906480	rs142513793	24057671	Chimusa ER	2013-09-18	Hum Mol Genet	Genome-wide association study of ancestry-specific TB risk in the South African Coloured population.	Tuberculosis	642 South African coloured cases, 91 South African coloured controls	NA	Xp11.23	intergenic	rs142513793-C	0.97	2E-7		5.0	[NR]	Affymetrix [up to 4467279] (imputed)	N
952	chrX	48207953	48207954	rs190283804	30842574	Luciano M	2019-03-06	Mol Psychiatry	The influence of X chromosome variants on trait neuroticism.	Neuroticism	405,274 European ancestry individuals	NA	Xp11.23	NR	rs190283804-C	1.0E-4	4E-6		1.3489	[0.77-1.92] unit increase	Illumina [1686693] (imputed)	N
953	chrX	48326778	48326779	rs5906672	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	Xp11.23		rs5906672-T	NR	7E-16		0.0426	[0.032-0.053] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
953	chrX	48326778	48326779	rs5906672	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	Xp11.23		rs5906672-T	NR	2E-8		0.0241	[0.016-0.033] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
953	chrX	48326778	48326779	rs5906672	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	Xp11.23		rs5906672-T	NR	3E-13		0.0364	[0.027-0.046] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
953	chrX	48326778	48326779	rs5906672	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	Xp11.23		rs5906672-T	NR	2E-19		0.0447	[0.035-0.054] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
953	chrX	48326778	48326779	rs5906672	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	Xp11.23	SLC38A5	rs5906672-T	0.041324	9E-17		0.0390671	[0.031-0.048] unit increase	Affymetrix [93095623] (imputed)	N
953	chrX	48326778	48326779	rs5906672	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	Xp11.23	SLC38A5	rs5906672-T	0.041315	2E-21		0.044218145	[0.035-0.053] unit increase	Affymetrix [93095623] (imputed)	N
954	chrX	48391866	48391867	rs12010615	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	Xp11.23		rs12010615-G	NR	7E-13		0.0162	[0.012-0.021] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
954	chrX	48436425	48436426	rs3200611	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Hepatitis A	2,442 European ancestry cases, 217,137 European ancestry controls	NA	Xp11.23	NR	rs3200611-?	NR	9E-6		0.2987	[0.16-0.44] unit increase	Illumina [at least 560000] (imputed)	N
955	chrX	48544152	48544153	rs146220228	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	Xp11.23	WAS	rs146220228-A	0.00265599999999999	7E-9		0.10620575	[0.07-0.142] unit decrease	Affymetrix [93095623] (imputed)	N
955	chrX	48595149	48595150	rs113119541	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	Xp11.23	GLOD5	rs113119541-?		1E-11				Affymetrix, Illumina [NR] (imputed)	N
955	chrX	48595300	48595301	rs782602858	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	Xp11.23	AF196970.3	rs782602858-A	0.00270000000000004	6E-16		0.14864437	[0.11-0.18] unit decrease	Affymetrix [93095623] (imputed)	N
955	chrX	48624882	48624883	rs112710029	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	Xp11.23	GLOD5	rs112710029-T	0.0956630000000001	3E-13		0.023383902	[0.017-0.03] unit increase	Affymetrix [93095623] (imputed)	N
956	chrX	48646381	48646382	rs146587548	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	Xp11.23		rs146587548-A	NR	7E-25		0.0807	[0.065-0.096] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
956	chrX	48646381	48646382	rs146587548	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	Xp11.23	GATA1	rs146587548-A	0.00929199999999997	1E-41		0.13390116	[0.11-0.15] unit decrease	Affymetrix [93095623] (imputed)	N
956	chrX	48646381	48646382	rs146587548	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	Xp11.23	GATA1	rs146587548-A	0.00928300000000004	1E-29		0.11422114	[0.094-0.134] unit decrease	Affymetrix [93095623] (imputed)	N
956	chrX	48646905	48646906	rs5906709	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	Xp11.23	GATA1	rs5906709-G	0.196039	5E-9		0.01384087	[0.0092-0.0185] unit decrease	Affymetrix [93095623] (imputed)	N
956	chrX	48680041	48680042	rs191407208	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 17, height of vermillion upper lip)	2,187 European ancestry individuals	NA	Xp11.23	NR	rs191407208-A	0.007359	2E-6		0.8159	[0.48-1.15] unit decrease	Illumina [10677593] (imputed)	N
956	chrX	48690415	48690416	rs6520383	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	Xp11.23		rs6520383-T	0.7561614	1E-11		0.058226593	[0.041-0.075] unit increase	Illumina [13429769] (imputed)	N
956	chrX	48691510	48691511	rs6609798	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	Xp11.23		rs6609798-C	NR	1E-9		1.0478771	[1.03212771130404-1.06386687599671]	Illumina [8919992] (imputed)	N
956	chrX	48706248	48706249	rs141584560	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Hepatitis A	2,442 European ancestry cases, 217,137 European ancestry controls	NA	Xp11.23	NR	rs141584560-?	NR	6E-6		0.2026	[0.11-0.29] unit increase	Illumina [at least 560000] (imputed)	N
956	chrX	48724648	48724650	rs782100977	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	Xp11.23	TIMM17B, PCSK1N	rs782100977-C	0.63	5E-9		1.06	1.04-1.08	Illumina [12557761] (imputed)	N
957	chrX	48759203	48759204	rs741932	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	Xp11.23		rs741932-T	NR	2E-8		0.0097	[0.0064-0.013] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
957	chrX	48770039	48770042	rs200010896	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	Xp11.23		rs200010896-G	NR	2E-8		0.0345	[0.022-0.047] unit increase	Affymetrix, Illumina [20536605] (imputed)	N
957	chrX	48820474	48820475	rs5905716	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	Xp11.23	KCND1	rs5905716-A	0.134995	7E-14		0.020619504	[0.015-0.026] unit increase	Affymetrix [93095623] (imputed)	N
957	chrX	48838150	48838151	rs3027476	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	Xp11.23	GRIPAP1	rs3027476-T	0.133593	8E-13		0.019301688	[0.014-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
957	chrX	48847496	48847497	rs11545861	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	Xp11.23		rs11545861-C	NR	5E-12		0.0369	[0.027-0.047] unit decrease	Affymetrix, Illumina [25845091] (imputed)	N
957	chrX	48859022	48859023	rs28571233	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	Xp11.23		rs28571233-T	NR	3E-8		0.0098	[0.0063-0.0133] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
959	chrX	49028159	49028160	rs41298450	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	Xp11.23	PLP2	rs41298450-A	0.032012	9E-10		0.03319589	[0.023-0.044] unit decrease	Affymetrix [93095623] (imputed)	N
959	chrX	49043607	49043608	rs184339396	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	Xp11.23		rs184339396-C	NR	8E-9		0.0336	[0.022-0.045] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
959	chrX	49043607	49043608	rs184339396	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	Xp11.23	PRICKLE3	rs184339396-C	0.032681	4E-12		0.036964696	[0.027-0.047] unit decrease	Affymetrix [93095623] (imputed)	N
959	chrX	49139786	49139787	rs5953283	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	Xp11.23	PPP1R3F	rs5953283-?	NR	6E-10		1.038	[1.03-1.05]	Affymetrix [9000000] (imputed)	N
959	chrX	49139786	49139787	rs5953283	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	Xp11.23	PPP1R3F	rs5953283-A	NR	7E-11		1.038	[1.03-1.05]	Affymetrix [9000000] (imputed)	N
961	chrX	49378490	49378491	rs187026599	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 17, height of vermillion upper lip)	2,187 European ancestry individuals	NA	Xp11.23	NR	rs187026599-G	0.00651	4E-6		0.748	[0.43-1.07] unit decrease	Illumina [10677593] (imputed)	N
961	chrX	49392720	49392721	rs5952553	27723757	Jin Y	2016-11-01	Nat Genet	Genome-wide association studies of autoimmune vitiligo identify 23 new risk loci and highlight key pathways and regulatory variants.	Vitiligo	2,853 European ancestry cases and 37,405 European ancestry controls	1,827 European ancestry cases and 2,181 European ancestry controls	Xp11.23	CCDC22, FOXP3, GAGE	rs5952553-T	0.5941	1E-9		1.1648223	[1.11-1.22]	Illumina [8966411] (imputed)	N
961	chrX	49408287	49408288	rs146999180	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Hepatitis A	2,442 European ancestry cases, 217,137 European ancestry controls	NA	Xp11.23	NR	rs146999180-?	NR	9E-6		0.5897	[0.36-0.82] unit increase	Illumina [at least 560000] (imputed)	N
962	chrX	49539682	49539683	rs73211727	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	Xp11.23		rs73211727-C	NR	1E-12		0.0417	[0.03-0.053] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
964	chrX	49695595	49695596	rs188104254	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	Xp11.23	CLCN5	rs188104254-C	0.9946	8E-6		0.6283	[0.35-0.9] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
964	chrX	49715072	49715073	rs782567961	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	Xp11.23	CLCN5	rs782567961-A	0.9978	3E-7		1.3772	[0.85-1.9] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
965	chrX	49837620	49837621	rs147570790	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	Xp11.23	CLCN5	rs147570790-T	0.0935589999999999	1E-10		0.020311171	[0.014-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
967	chrX	50168355	50168356	rs9969946	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	Xp11.22		rs9969946-A	NR	6E-10		0.011	[0.0075-0.0145] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
967	chrX	50171427	50171428	rs4826631	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	Xp11.22	NR	rs4826631-T	0.70749	4E-8		0.00635168	[0.0041-0.0086] unit increase	Affymetrix [16578495] (imputed)	N
967	chrX	50182183	50182184	rs1934179	21113153	van der Zanden LF	2010-11-28	Nat Genet	Common variants in DGKK are strongly associated with risk of hypospadias.	Hypospadias	436 European ancestry cases, 494 European ancestry controls	133 European ancestry cases and their parents, 266 European ancestry cases, 402 European ancestry controls	Xp11.22	DGKK	rs1934179-A	0.33	3E-21		2.6	[2.1-3.1]	Affymetrix [574400]	N
967	chrX	50188291	50188292	rs12557277	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	Xp11.22		rs12557277-A	NR	6E-12		0.0104	[0.0075-0.0133] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
967	chrX	50194936	50194937	rs140659849	26307654	Szulkin R	2015-08-25	Cancer Epidemiol Biomarkers Prev	Genome-wide association study of prostate cancer-specific survival.	Prostate cancer (survival)	7,322 cases	18,197 European ancestry cases	Xp11.22	NR	rs140659849-A	0.01	1E-7		2.61	[1.83-3.73]	Affymetrix, Illumina [up to 9536409] (imputed)	N
968	chrX	50203401	50203402	rs4554617	25108383	Geller F	2014-08-10	Nat Genet	Genome-wide association analyses identify variants in developmental genes associated with hypospadias.	Hypospadias	1,006 European ancestry male child cases, 2,390 European ancestry male child controls, 3,096 European ancestry female child controls	1,972 European ancestry male child cases, 1,401 European ancestry male child controls, 405 European ancestry female child controls, 6 European ancestry child controls	Xp11.22	DGKK	rs4554617-C	0.312	1E-93		2.52	[NR]	Illumina [8207076] (imputed)	N
968	chrX	50207140	50207141	rs57822841	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	Xp11.22		rs57822841-G	NR	2E-9		0.0105	[0.0072-0.0138] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
968	chrX	50220829	50220830	rs782159242	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	Xp11.22	NR	rs782159242-CT	0.704783	2E-9		0.0137976	[0.0092-0.0184] unit increase	Affymetrix [16577313] (imputed)	N
968	chrX	50325887	50325888	rs5915274	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	Xp11.22		rs5915274-C	NR	3E-13		0.0097	[0.0072-0.0122] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
969	chrX	50341687	50341688	rs781838721	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	Xp11.22	SHROOM4	rs781838721-A	0.9964	4E-7		1.0177	[0.62-1.41] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
969	chrX	50372903	50372904	rs5915287	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	Xp11.22	NR	rs5915287-G	0.391313	1E-8		0.0123973	[0.008-0.0167] unit increase	Affymetrix [16577424] (imputed)	N
969	chrX	50383044	50383045	rs4826645	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	Xp11.22	NR	rs4826645-T	0.363846	4E-8		0.00947101	[0.0061-0.0129] unit increase	Affymetrix [16583148] (imputed)	N
974	chrX	51117171	51117172	rs12837176	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first birth	542,901 European ancestry individuals	NA	Xp11.22	NUDT10	rs12837176-A	0.8139	1E-8		0.083	[0.054-0.112] unit increase	NR [9744772] (imputed)	N
975	chrX	51210056	51210057	rs1327301	19767753	Eeles RA	2009-09-20	Nat Genet	Identification of seven new prostate cancer susceptibility loci through a genome-wide association study.	Prostate cancer	1,854 European ancestry cases, 1,894 European ancestry controls	19,879 cases and 18,761 controls of European, East Asian, African American, Latino, and Hawaiian ancestry	Xp11.22	NR	rs1327301-?	NR	2E-10				Illumina [541129]	N
975	chrX	51229682	51229683	rs5945572	18264098	Gudmundsson J	2008-02-10	Nat Genet	Common sequence variants on 2p15 and Xp11.22 confer susceptibility to prostate cancer.	Prostate cancer	1,854 European ancestry cases, 21,372 European ancestry controls	8,239 European ancestry cases, 7,590 European ancestry controls	Xp11.22	LOC340602, NUDT10, NUDT11	rs5945572-A	0.35	4E-13		1.23	[1.16-1.30]	Illumina [310520]	N
975	chrX	51241671	51241672	rs5945619	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Prostate cancer	7,438 White British ancestry cases, 118,206 White British ancestry controls	NA	Xp11.22		rs5945619-?	NR	7E-12		1.0889	[1.06-1.11]	NR [680312]	N
975	chrX	51241671	51241672	rs5945619	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	Xp11.22	NR	rs5945619-C	0.36	1E-73		1.11	[1.10-1.12]	Illumina [20370935] (imputed)	N
975	chrX	51241671	51241672	rs5945619	18264097	Eeles RA	2008-02-10	Nat Genet	Multiple newly identified loci associated with prostate cancer susceptibility.	Prostate cancer	1,854 European ancestry cases, 1,894 European ancestry controls	3,268 European ancestry cases, 3,366 European ancestry controls	Xp11.22	NUDT10, NUDT11	rs5945619-C	0.36	2E-9		1.19	[1.07-1.31]	Illumina [541129]	N
975	chrX	51245276	51245277	rs11338635	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 91,972 European ancestry controls	6,852 European ancestry cases, 193,117 European ancestry controls	Xp11.22	NR	rs11338635-GA	0.3676828	1E-9		1.083639	[1.06-1.11]	Affymetrix, Illumina [20400945] (imputed)	N
975	chrX	51245276	51245277	rs11338635	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	Xp11.22	NR	rs11338635-GA	NR	7E-85		1.103	[1.09-1.11]	Affymetrix, Illumina [29235255] (imputed)	N
975	chrX	51245276	51245277	rs11338635	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	10,368 African ancestry cases, 10,986 African ancestry controls	NA	Xp11.22	NR	rs11338635-GA	0.349	3E-8		1.087	[1.06-1.12]	Affymetrix, Illumina [18877980] (imputed)	N
976	chrX	51285740	51285741	rs5987437	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Prostate cancer	11,599 European ancestry cases, 199,628 European ancestry controls, 5,672 East Asian ancestry cases, 84,660 East Asian ancestry controls	NA	Xp11.22		rs5987437-T	NR	8E-19		0.0855	[0.067-0.104] unit decrease	Affymetrix, Illumina [25775424] (imputed)	N
977	chrX	51382501	51382502	rs185472723	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 1 levels	252 European ancestry individuals	NA	Xp11.22		rs185472723-T	NR	1E-6		23.239	[14.08-32.4] unit increase	Illumina [NR] (imputed)	N
977	chrX	51397725	51397726	rs12558898	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Prostate cancer	7,438 White British ancestry cases, 118,206 White British ancestry controls	NA	Xp11.22		rs12558898-?	NR	4E-10		1.08211	[1.06-1.11]	NR [680312]	N
978	chrX	51637992	51637993	rs140779411	33602968	Skuladottir AT	2021-02-18	Sci Rep	A meta-analysis uncovers the first sequence variant conferring risk of Bell's palsy.	Bell's palsy	4,714 European ancestry cases, 1,011,520 European ancestry controls	NA	Xp11.22	MAGED1	rs140779411-A	0.0149	6E-6		1.32445	NR	Affymetrix, Illumina [30341632] (imputed)	N
979	chrX	51697193	51697194	rs4131729	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Prostate cancer	7,438 White British ancestry cases, 118,206 White British ancestry controls	NA	Xp11.22		rs4131729-?	NR	5E-8		1.0722	[1.05-1.1]	NR [680312]	N
979	chrX	51707246	51707247	rs183515128	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 1 levels	252 European ancestry individuals	NA	Xp11.22		rs183515128-C	NR	1E-6		25.453	[15.39-35.51] unit increase	Illumina [NR] (imputed)	N
979	chrX	51737573	51737574	rs5991725	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	Xp11.22		rs5991725-C	NR	4E-9		0.0143	[0.0096-0.019] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
981	chrX	51964510	51964511	rs73206415	33602968	Skuladottir AT	2021-02-18	Sci Rep	A meta-analysis uncovers the first sequence variant conferring risk of Bell's palsy.	Bell's palsy	4,714 European ancestry cases, 1,011,520 European ancestry controls	NA	Xp11.22	LOC105377209	rs73206415-T	0.0192	4E-6		1.29421	NR	Affymetrix, Illumina [30341632] (imputed)	N
987	chrX	52695894	52695895	rs5943724	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	Xp11.22	NR	rs5943724-G	NR	4E-18		1.047	[1.04-1.06]	Affymetrix, Illumina [29235255] (imputed)	N
988	chrX	52896948	52896949	rs2807031	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	Xp11.22	NR	rs2807031-C	0.18	8E-16		1.06	[1.04-1.07]	Illumina [20370935] (imputed)	N
988	chrX	52896948	52896949	rs2807031	25939597	Berndt SI	2015-05-05	Nat Commun	Two susceptibility loci identified for prostate cancer aggressiveness.	Prostate cancer	4,600 European ancestry cases, 2,941 European ancestry controls	7,779 European ancestry cases, 7,623 European ancestry controls	Xp11.22	NR	rs2807031-C	0.161	4E-6		1.15	[1.09-1.22]	Illumina [1531807] (imputed)	N
988	chrX	52896948	52896949	rs2807031	25217961	Al Olama AA	2014-09-14	Nat Genet	A meta-analysis of 87,040 individuals identifies 23 new susceptibility loci for prostate cancer.	Prostate cancer	34,379 European ancestry cases, 33,164 European ancestry controls, 5,327 African ancestry cases, 5,136 African ancestry controls, 2,563 Japanese ancestry cases, 4,391 Japanese ancestry controls, 1,034 Latino cases, 1,046 Latino controls	NA	Xp11.22	XAGE3	rs2807031-C	0.18	9E-10	(EA)	1.07	[1.04-1.09]	Affymetrix, Illumina [up to 16852405] (imputed)	N
988	chrX	52896948	52896949	rs2807031	25217961	Al Olama AA	2014-09-14	Nat Genet	A meta-analysis of 87,040 individuals identifies 23 new susceptibility loci for prostate cancer.	Prostate cancer	34,379 European ancestry cases, 33,164 European ancestry controls, 5,327 African ancestry cases, 5,136 African ancestry controls, 2,563 Japanese ancestry cases, 4,391 Japanese ancestry controls, 1,034 Latino cases, 1,046 Latino controls	NA	Xp11.22	XAGE3	rs2807031-C	0.18	3E-11		1.07	[1.05-1.09]	Affymetrix, Illumina [up to 16852405] (imputed)	N
990	chrX	53102955	53102956	rs7473421	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	Xp11.22	GPR173	rs7473421-A	0.806018	2E-9		0.0134397	[0.0091-0.0178] unit decrease	NR [16516521] (imputed)	N
990	chrX	53177303	53177304	rs201743216	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	Xp11.22		rs201743216-A	NR	5E-11		0.0174	[0.012-0.022] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
990	chrX	53201608	53201609	rs142812240	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	Xp11.22		rs142812240-A	0.06262	2E-9		0.0207219	[0.014-0.028] unit increase	Illumina [13479295] (imputed)	N
991	chrX	53233439	53233445	rs10604955	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	Xp11.22		rs10604955-C	NR	4E-11		0.0474	[0.033-0.062] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
991	chrX	53255290	53255291	rs3810737	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	Xp11.22	KDM5C	rs3810737-G	0.9804818	4E-9		0.03935985	[0.026-0.052] unit decrease	Affymetrix [93095623] (imputed)	N
991	chrX	53272162	53272163	rs4830360	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	Xp11.22	IQSEC2	rs4830360-G	0.9792135	2E-10		0.04199514	[0.029-0.055] unit increase	Affymetrix [93095623] (imputed)	N
991	chrX	53317279	53317280	rs140498714	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	Xp11.22	NR	rs140498714-C	0.98271	2E-8		0.0544025	[0.035-0.074] unit increase	Affymetrix [16577424] (imputed)	N
992	chrX	53400306	53400312	rs782717432	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	Xp11.22	SMC1A	rs782717432-C	1.25999999999959E-4	2E-10		0.606011	[0.43-0.78] unit decrease	Affymetrix [93095623] (imputed)	N
993	chrX	53542106	53542107	rs6529684	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	Xp11.22	HSD17B10, HUWE1	rs6529684-G	0.476	3E-8	(Japanese)	0.016	[0.01-0.022] unit increase	Illumina [6108953] (imputed)	N
993	chrX	53599112	53599113	rs5978136	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	Xp11.22		rs5978136-G	NR	5E-26		0.0163	[0.013-0.019] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
993	chrX	53606382	53606383	rs56771508	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	163,835 East Asian ancestry individuals	NA	Xp11.22		rs56771508-A	0.482002	2E-8		0.0145519	[0.0095-0.0196] unit increase	Illumina [13479178] (imputed)	N
994	chrX	53616093	53616093	rs201921493	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	Xp11.22		rs201921493-CCACTT	NR	3E-23		0.0134	[0.011-0.016] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
994	chrX	53709963	53709964	rs6638417	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	Xp11.22		rs6638417-G	NR	3E-11		0.0331	[0.023-0.043] unit increase	Affymetrix, Illumina [25845091] (imputed)	N
994	chrX	53734563	53734564	rs6529693	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	Xp11.22	SMC1A, RIBC1, HSD17B10, HUWE1, MIR98, MIRLET7F2	rs6529693-G	0.5349999999999999	1E-6		1.0524322		NR [9372253] (imputed)	N
995	chrX	53795624	53795625	rs12384986	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	Xp11.22	HUWE1	rs12384986-A	0.4551	4E-10		6.26	[6.26-6.26] z-score increase	Affymetrix, Illumina [10000000] (imputed)	N
996	chrX	53922882	53922883	rs7877755	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	Xp11.22	NR	rs7877755-?	NR	6E-6		0.0623	[0.035-0.089] unit increase	Illumina [at least 560000] (imputed)	N
996	chrX	53974053	53974054	rs7065696	21057379	Curtis D	2010-11-04	Psychiatr Genet	Case-case genome-wide association analysis shows markers differentially associated with schizophrenia and bipolar disorder and implicates calcium channel genes.	Bipolar disorder and schizophrenia	506 European ancestry bipolar 1 disorder cases, 523 European ancestry schizophrenia cases, 505 European ancestry controls	NA	Xp11.22	PHF8	rs7065696-?	NR	4E-7				Affymetrix [302482]	N
996	chrX	54000413	54000414	rs138310191	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	Xp11.22	NR	rs138310191-T	0.028734999999999955	5E-12		0.014093	[0.01-0.018] unit increase	Affymetrix [16582909] (imputed)	N
996	chrX	54000413	54000414	rs138310191	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	Xp11.22	NR	rs138310191-T	0.028734999999999955	3E-9		0.0131661	[0.0086-0.0177] unit increase	Affymetrix [16582965] (imputed)	N
997	chrX	54004537	54004538	rs148427769	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	Xp11.22	NR	rs148427769-G	0.02928200000000003	2E-9		0.0136182	[0.0088-0.0184] unit increase	Affymetrix [16582621] (imputed)	N
997	chrX	54004537	54004538	rs148427769	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	Xp11.22	NR	rs148427769-G	0.02928200000000003	3E-8		0.0139395	[0.0088-0.019] unit increase	Affymetrix [16582614] (imputed)	N
997	chrX	54044106	54044107	rs148215758	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	Xp11.22	NR	rs148215758-?	NR	2E-7	(Native Hawaiian)	1.1057	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
997	chrX	54116220	54116221	rs12690002	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	Xp11.22		rs12690002-T	NR	1E-8		0.0197	[0.013-0.026] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
998	chrX	54231258	54231259	rs181138007	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	Xp11.22	WNK3	rs181138007-T	0.0021	4E-6		0.6624	[0.38-0.94] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1000	chrX	54441240	54441240	rs200954687	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	Xp11.22		rs200954687-CTTTTTTTTGGTG	0.066867	7E-11		0.024984064	[0.017-0.032] unit increase	Affymetrix [93095623] (imputed)	N
1000	chrX	54454405	54454406	rs4826594	31562322	Takata R	2019-09-27	Nat Commun	12 new susceptibility loci for prostate cancer identified by genome-wide association study in Japanese population.	Prostate cancer	5,088 Japanese ancestry cases, 10,682 Japanese ancestry controls	4,818 Japanese ancestry cases, 73,261 Japanese ancestry controls	Xp11.22	FGD1, GNL3L, TSR2	rs4826594-A	0.508	7E-9		1.0695187	NR	Illumina [7742602] (imputed)	N
1000	chrX	54487308	54487309	rs769712707	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	Xp11.22	NR	rs769712707-C	0.994201	2E-8		0.0709867	[0.046-0.096] unit increase	Affymetrix [16583148] (imputed)	N
1001	chrX	54624387	54624388	rs140707533	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		Xp11.22	NR	rs140707533-A	NR	3E-14		0.1341	NR unit decrease	NR [NR] (imputed)	N
1002	chrX	54760040	54760041	rs141798299	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	Xp11.22		rs141798299-G	NR	4E-8		0.0076	[0.0049-0.0103] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1003	chrX	54802519	54802520	rs5961136	25710614	Hong X	2015-02-24	Nat Commun	Genome-wide association study identifies peanut allergy-specific loci and evidence of epigenetic mediation in US children.	Egg allergy	217 European ancestry child cases, 144 European ancestry non-allergic non-sensitized normal child controls, 688 European ancestry uncertain phenotype child controls, 1,148 European ancestry uncertain phenotype adult controls	NA	Xp11.22	ITIH5L	rs5961136-?	NR	2E-6				Illumina [6459842] (imputed)	N
1003	chrX	54896696	54896697	rs143113301	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	Xp11.21		rs143113301-A	0.00984499999999999	3E-10		0.06465335	[0.045-0.085] unit decrease	Affymetrix [93095623] (imputed)	N
1003	chrX	54896696	54896697	rs143113301	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	Xp11.21		rs143113301-A	0.00981799999999999	1E-10		0.06657234	[0.046-0.087] unit decrease	Affymetrix [93095623] (imputed)	N
1004	chrX	54919211	54919212	rs763812285	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	Xp11.21		rs763812285-T	0.00179399999999996	2E-14		0.17181565	[0.13-0.22] unit increase	Affymetrix [93095623] (imputed)	N
1004	chrX	54923937	54923938	rs777107689	30842574	Luciano M	2019-03-06	Mol Psychiatry	The influence of X chromosome variants on trait neuroticism.	Neuroticism	405,274 European ancestry individuals	NA	Xp11.21	NR	rs777107689-T	0.9987	4E-6		0.1427	[0.082-0.203] unit increase	Illumina [1686693] (imputed)	N
1004	chrX	54937172	54937172	rs370505437	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	Xp11.21		rs370505437-TTA	NR	2E-8		0.0115	[0.0076-0.0154] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
1004	chrX	54967046	54967047	rs186567375	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	Xp11.21		rs186567375-A	NR	1E-14		0.161	[0.12-0.2] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
1004	chrX	54967046	54967047	rs186567375	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	Xp11.21		rs186567375-A	NR	2E-36		0.304	[0.26-0.35] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
1004	chrX	54967046	54967047	rs186567375	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	Xp11.21	PFKFB1	rs186567375-A	0.00182300000000002	4E-18		0.19738606	[0.15-0.24] unit decrease	Affymetrix [93095623] (imputed)	N
1004	chrX	54967046	54967047	rs186567375	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	Xp11.21	PFKFB1	rs186567375-A	0.00181299999999995	1E-17		0.19608857	[0.15-0.24] unit decrease	Affymetrix [93095623] (imputed)	N
1004	chrX	54967046	54967047	rs186567375	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	Xp11.21	PFKFB1	rs186567375-A	0.00182099999999996	1E-49		0.329387	[0.29-0.37] unit decrease	Affymetrix [93095623] (imputed)	N
1004	chrX	54967046	54967047	rs186567375	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	Xp11.21	PFKFB1	rs186567375-A	0.00182300000000002	2E-50		0.33620706	[0.29-0.38] unit decrease	Affymetrix [93095623] (imputed)	N
1004	chrX	55044187	55044188	rs41308048	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	Xp11.21	ALAS2	rs41308048-G	0.022134	3E-21		0.06405064	[0.051-0.077] unit increase	Affymetrix [93095623] (imputed)	N
1004	chrX	55044187	55044188	rs41308048	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	Xp11.21	ALAS2	rs41308048-G	0.022164	4E-13		0.048557594	[0.035-0.062] unit increase	Affymetrix [93095623] (imputed)	N
1004	chrX	55044187	55044188	rs41308048	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	Xp11.21	ALAS2	rs41308048-G	0.02214	4E-37		0.0839553	[0.072-0.096] unit decrease	Affymetrix [93095623] (imputed)	N
1004	chrX	55044187	55044188	rs41308048	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	Xp11.21	ALAS2	rs41308048-G	0.022161	1E-11		0.0407353	[0.028-0.054] unit decrease	Affymetrix [93095623] (imputed)	N
1004	chrX	55044187	55044188	rs41308048	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	Xp11.21	ALAS2	rs41308048-G	0.02213	6E-42		0.091760784	[0.079-0.105] unit decrease	Affymetrix [93095623] (imputed)	N
1004	chrX	55047740	55047741	rs45479691	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	Xp11.21	ALAS2	rs45479691-A	0.055427	4E-25		0.0365134	[0.028-0.045] unit increase	Affymetrix [93095623] (imputed)	N
1004	chrX	55047740	55047741	rs45479691	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	Xp11.21	ALAS2	rs45479691-A	0.055435	4E-20		0.042511795	[0.033-0.052] unit increase	Affymetrix [93095623] (imputed)	N
1005	chrX	55066473	55066474	rs142008911	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	Xp11.21		rs142008911-C	0.0552	7E-10		0.027927833	[0.019-0.037] unit increase	Affymetrix [93095623] (imputed)	N
1005	chrX	55118080	55118081	rs4014653	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	Xp11.21	PAGE2	rs4014653-G	0.338431	1E-16		0.0176788	[0.014-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1005	chrX	55118080	55118081	rs4014653	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	Xp11.21	PAGE2	rs4014653-G	0.338448	2E-21		0.022045242	[0.017-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1005	chrX	55132755	55132756	rs191814839	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	Xp11.21	intergenic	rs191814839-G	0.0133689	3E-36		0.120823	[0.1-0.14] unit increase	NR [19129689] (imputed)	N
1005	chrX	55133844	55133845	rs185597083	28272467	Heilmann-Heimbach S	2017-03-08	Nat Commun	Meta-analysis identifies novel risk loci and yields systematic insights into the biology of male-pattern baldness.	Male-pattern baldness	10,846 European ancestry cases, 11,672 European ancestry controls	NA	Xp11.21		rs185597083-C	0.04	1E-11		0.3	[0.22-0.38] unit increase	Affymetrix, Illumina [8004650] (imputed)	N
1005	chrX	55133844	55133845	rs185597083	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Male-pattern baldness	9,009 European ancestry cases, 8,491 European ancestry controls	NA	Xp11.21	PAGE2B, FAM104B	rs185597083-?	NR	8E-13		1.388	[1.267-1.520]	Illumina [13436641] (imputed)	N
1005	chrX	55137977	55137978	rs4124595	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	Xp11.21		rs4124595-G	0.617842	3E-8		0.0165756	[0.011-0.022] unit decrease	Illumina [13476266] (imputed)	N
1005	chrX	55141551	55141552	rs201035844	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	Xp11.21		rs201035844-C	0.421525	1E-10		0.0119033	[0.0079-0.0159] unit decrease	Affymetrix [93095623] (imputed)	N
1005	chrX	55143255	55143256	rs145442859	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	Xp11.21		rs145442859-A	0.045474	3E-8		0.0427201	[0.028-0.058] unit decrease	Illumina [13476299] (imputed)	N
1006	chrX	55204250	55204251	rs7056546	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	Xp11.21	MTND1P30, RP11-266I3.7, MTND2P24, RP11-266I3.5, MTRNR2L10	rs7056546-A	0.596044	4E-22		0.018238796	[0.015-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1007	chrX	55330958	55330959	rs138216499	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		Xp11.21	FAM104B, MTRNR2L10, PAGE3, PAGE5	rs138216499-A	NR	5E-10		0.09951	NR unit decrease	NR [NR] (imputed)	N
1007	chrX	55393078	55393079	rs4240023	24665060	Argos M	2014-03-24	J Med Genet	Genome-wide association study of smoking behaviours among Bangladeshi adults.	Smoking initiation	754 Bangladeshi ancestry never smoker males, 2,565 Bangladeshi ancestry never smoker females, 1,837 Bangladeshi ancestry ever smoker males, 198 Bangladeshi ancestry ever smoker females	NA	Xp11.21	PAGE3, MAGEH1, MIR4536-1, RRAGB, LOC644924, USP51, XAGE-4	rs4240023-?		8E-8	(females)			Illumina [1211988] (imputed)	N
1007	chrX	55406492	55406493	rs150608359	30842574	Luciano M	2019-03-06	Mol Psychiatry	The influence of X chromosome variants on trait neuroticism.	Neuroticism	405,274 European ancestry individuals	NA	Xp11.21	NR	rs150608359-A	0.0678	9E-7		0.0182	[0.011-0.025] unit increase	Illumina [1686693] (imputed)	N
1007	chrX	55406492	55406493	rs150608359	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	Xp11.21	intergenic	rs150608359-A	0.0708139	3E-283		0.776476	[0.75-0.8] unit decrease	NR [19129689] (imputed)	N
1007	chrX	55429216	55429217	rs5914340	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	Xp11.21	intergenic	rs5914340-G	0.127611	8E-32		0.0401173	[0.033-0.047] unit increase	NR [19129689] (imputed)	N
1008	chrX	55477620	55477621	rs17250872	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	Xp11.21	intergenic	rs17250872-C	0.0464868	2E-27		0.0604074	[0.05-0.071] unit decrease	NR [19129689] (imputed)	N
1008	chrX	55507548	55507549	rs139777717	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	Xp11.21	intergenic	rs139777717-A	0.00511866	6E-9		0.0895731	[0.059-0.12] unit decrease	NR [19129689] (imputed)	N
1008	chrX	55529635	55529635	rs778239811	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	Xp11.21	NR	rs778239811-T	0.729992	3E-10		0.00486543	[0.0033-0.0064] unit increase	Affymetrix [16582909] (imputed)	N
1008	chrX	55529635	55529635	rs778239811	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	Xp11.21	NR	rs778239811-T	0.731725	7E-11		0.00597119	[0.0041-0.0078] unit increase	Affymetrix [16582621] (imputed)	N
1008	chrX	55529635	55529635	rs778239811	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	Xp11.21	NR	rs778239811-T	0.729992	3E-10		0.00538132	[0.0036-0.0071] unit increase	Affymetrix [16582965] (imputed)	N
1008	chrX	55529635	55529635	rs778239811	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	Xp11.21	NR	rs778239811-T	0.731725	4E-9		0.00584092	[0.0039-0.0078] unit increase	Affymetrix [16582614] (imputed)	N
1008	chrX	55554809	55554810	rs3126258	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	Xp11.21	USP51	rs3126258-A	0.7073	1E-9		6.048	[6.04-6.05] z-score increase	Affymetrix, Illumina [10000000] (imputed)	N
1009	chrX	55704360	55704361	rs149290585	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	Xp11.21		rs149290585-C	0.039107	1E-9		0.035197742	[0.024-0.047] unit increase	Affymetrix [93095623] (imputed)	N
1011	chrX	55936821	55936822	rs10855058	28139693	Hoffmann TJ	2017-01-31	Nat Commun	Genome-wide association study of prostate-specific antigen levels identifies novel loci independent of prostate cancer.	Prostate-specific antigen levels	28,503 European ancestry individuals	2,716 Latino individuals, 2,518 East Asian ancestry individuals, 1,585 African American individuals, 6,193 European ancestry individuals (later diagnosed with prostate cancer), 5,603 European ancestry individuals	Xp11.21	RRAGB	rs10855058-A	0.3	1E-8		0.0254562	[0.017-0.034] unit increase	Affymetrix [10109774] (imputed)	N
1011	chrX	55950015	55950016	rs143149578	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Male-pattern baldness	9,009 European ancestry cases, 8,491 European ancestry controls	NA	Xp11.21	RRAGB, KLF8	rs143149578-?	NR	6E-18		1.7123288	[1.51-1.95]	Illumina [13436641] (imputed)	N
1012	chrX	56061249	56061250	rs183056377	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	Xp11.21	NR	rs183056377-?	NR	4E-7	(Native Hawaiian)	0.8009	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1013	chrX	56197394	56197395	rs143212632	30842574	Luciano M	2019-03-06	Mol Psychiatry	The influence of X chromosome variants on trait neuroticism.	Neuroticism	405,274 European ancestry individuals	NA	Xp11.21	NR	rs143212632-A	0.0347	6E-7		0.0256	[0.016-0.036] unit increase	Illumina [1686693] (imputed)	N
1013	chrX	56197394	56197395	rs143212632	28272467	Heilmann-Heimbach S	2017-03-08	Nat Commun	Meta-analysis identifies novel risk loci and yields systematic insights into the biology of male-pattern baldness.	Male-pattern baldness	10,846 European ancestry cases, 11,672 European ancestry controls	NA	Xp11.21		rs143212632-G	0.04	3E-15		0.38	[0.28-0.48] unit increase	Affymetrix, Illumina [8004650] (imputed)	N
1013	chrX	56216257	56216258	rs5914589	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	Xp11.21		rs5914589-A	NR	2E-10		0.0104	[0.0073-0.0135] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
1014	chrX	56287725	56287726	rs73206583	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		Xp11.21	KLF8	rs73206583-A	NR	3E-8		0.06571	NR unit decrease	NR [NR] (imputed)	N
1014	chrX	56344464	56344465	rs5914614	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	Xp11.21		rs5914614-C	NR	4E-10		0.012	[0.0083-0.0157] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
1014	chrX	56352054	56352055	rs141050978	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	Xp11.21	intergenic	rs141050978-C	0.033902	2E-10		0.0411214	[0.028-0.054] unit increase	NR [19129689] (imputed)	N
1015	chrX	56483571	56483572	rs6651991	34337532	Fantus RJ	2021-05-25	Eur Urol Open Sci	Genetic Susceptibility for Low Testosterone in Men and Its Implications in Biology and Screening: Data from the UK Biobank.	Low testosterone levels	13,409 European ancestry male cases, 98,267 European ancestry male controls	4,426 European ancestry male cases, 32,800 European ancestry male controls	Xp11.21	NR	rs6651991-G	0.79	5E-10		1.14	NR	NR [8853336] (imputed)	N
1016	chrX	56492196	56492197	rs148464540	30842574	Luciano M	2019-03-06	Mol Psychiatry	The influence of X chromosome variants on trait neuroticism.	Neuroticism	405,274 European ancestry individuals	NA	Xp11.21	NR	rs148464540-T	0.042	4E-6		0.0215	[0.012-0.031] unit increase	Illumina [1686693] (imputed)	N
1016	chrX	56601699	56601700	rs145692111	30842574	Luciano M	2019-03-06	Mol Psychiatry	The influence of X chromosome variants on trait neuroticism.	Neuroticism	405,274 European ancestry individuals	NA	Xp11.21	NR	rs145692111-A	0.9266	7E-6		0.016	[0.0089-0.0231] unit decrease	Illumina [1686693] (imputed)	N
1018	chrX	56772272	56772277	rs199795985	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	Xp11.21	RP11-622K12.1	rs199795985-A	0.789869	1E-15		0.018602168	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1018	chrX	56786833	56786833	rs761954625	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	Xp11.21	NR	rs761954625-CTG	0.227374	5E-38		0.0317033	[0.027-0.037] unit increase	Affymetrix [16577313] (imputed)	N
1018	chrX	56811694	56811695	rs4826508	23720494	Evans DM	2013-05-29	Hum Mol Genet	Genome-wide association study identifies loci affecting blood copper, selenium and zinc.	Blood trace element (Zn levels)	2,603 European ancestry individuals	NA	Xp11.21	KLF8, ZXDA, ZXDB	rs4826508-T	NR	1E-12		0.21	[0.15-0.27] unit increase	Illumina [> 2500000] (imputed)	N
1018	chrX	56815740	56815741	rs5913997	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	Xp11.21		rs5913997-C	NR	3E-48		0.0181	[0.016-0.02] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1018	chrX	56815740	56815741	rs5913997	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	Xp11.21	NR	rs5913997-G	0.195949	9E-90		0.0526047	[0.047-0.058] unit increase	Affymetrix [16577424] (imputed)	N
1018	chrX	56857920	56857921	rs5960214	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	Xp11.21		rs5960214-C	NR	5E-10		0.0113	[0.0078-0.0148] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1018	chrX	56858216	56858217	rs1930991	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	Xp11.21		rs1930991-C	0.777129	3E-16		0.018073417	[0.014-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1018	chrX	56867020	56867021	rs183673470	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Hepatitis B	1,425 European ancestry cases, 218,180 European ancestry controls	NA	Xp11.21	NR	rs183673470-?	NR	9E-6		0.4585	[0.23-0.69] unit decrease	Illumina [at least 560000] (imputed)	N
1018	chrX	56868103	56868104	rs12007386	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	Xp11.21		rs12007386-C	NR	6E-10		0.0125	[0.0086-0.0164] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
1018	chrX	56868103	56868104	rs12007386	30842574	Luciano M	2019-03-06	Mol Psychiatry	The influence of X chromosome variants on trait neuroticism.	Neuroticism	405,274 European ancestry individuals	NA	Xp11.21	NR	rs12007386-T	0.207	5E-6		0.0102	[0.0059-0.0145] unit decrease	Illumina [1686693] (imputed)	N
1019	chrX	56893631	56893631	rs80244908	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	Xp11.21		rs80244908-CT	NR	5E-18		0.0177	[0.014-0.022] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
1019	chrX	56893631	56893631	rs80244908	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	Xp11.21		rs80244908-CT	NR	5E-13		0.0152	[0.011-0.019] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
1019	chrX	56908701	56908702	rs5914012	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	Xp11.21	NBDY	rs5914012-T	0.353	7E-9		1.104	[1.07-1.14]	Illumina [11270530] (imputed)	N
1019	chrX	56926812	56926812	rs60327283	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	Xp11.21	intergenic	rs60327283-?	0.276121	9E-48		0.0422037	[0.037-0.048] unit increase	NR [19129689] (imputed)	N
1019	chrX	56931684	56931684	rs138430382	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	Xp11.21	NR	rs138430382-C	0.201923	9E-69		0.0365288	[0.032-0.041] unit increase	Affymetrix [16583148] (imputed)	N
1019	chrX	56997762	56997763	rs5960873	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	Xp11.21	RP11-445O16.3	rs5960873-C	0.788061	6E-35		0.029487295	[0.025-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
1019	chrX	57000573	57000574	rs5960233	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	Xp11.21	RP11-445O16.3	rs5960233-C	0.79363	7E-62		0.038488567	[0.034-0.043] unit decrease	Affymetrix [93095623] (imputed)	N
1019	chrX	57007024	57007025	rs35406259	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	Xp11.21	SPIN3	rs35406259-T	0.79353	2E-152		0.06099085	[0.056-0.066] unit decrease	Affymetrix [93095623] (imputed)	N
1019	chrX	57008215	57008216	rs5914035	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	Xp11.21	SPIN3	rs5914035-C	0.222936	8E-24		0.0226915	[0.018-0.027] unit increase	NR [13737936] (imputed)	N
1020	chrX	57017349	57017350	rs34237494	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	Xp11.21		rs34237494-T	NR	3E-31		0.0319	[0.027-0.037] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
1020	chrX	57070805	57070806	rs4029980	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	Xp11.21		rs4029980-C	0.785625	2E-16		0.018873228	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1020	chrX	57105277	57105278	rs150096	31959922	Matoba N	2020-01-20	Nat Hum Behav	GWAS of 165,084 Japanese individuals identified nine loci associated with dietary habits.	Alcohol consumption (drinkers vs non-drinkers)	83,713 Japanese ancestry ever drinkers, 81,371 Japanese ancestry never drinkers	NA	Xp11.21	SPIN3, SPIN2B	rs150096-?	NR	2E-8		0.044	[0.029-0.059] unit decrease	Illumina [6108828] (imputed)	N
1020	chrX	57117821	57117822	rs5914892	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	Xp11.21		rs5914892-C	0.209835	2E-40		0.0331116	[0.029-0.037] unit increase	Affymetrix [93095623] (imputed)	N
1021	chrX	57166850	57166850	rs761059654	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	Xp11.21	SPIN2A	rs761059654-CA	0.19899	9E-34		0.02912607	[0.024-0.034] unit increase	Affymetrix [93095623] (imputed)	N
1021	chrX	57166850	57166850	rs761059654	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	Xp11.21	SPIN2A	rs761059654-CA	0.19898	9E-30		0.02724224	[0.023-0.032] unit increase	Affymetrix [93095623] (imputed)	N
1021	chrX	57166850	57166850	rs761059654	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	Xp11.21	SPIN2A	rs761059654-CA	0.199066	3E-35		0.029438602	[0.025-0.034] unit increase	Affymetrix [93095623] (imputed)	N
1021	chrX	57166850	57166850	rs761059654	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	Xp11.21	SPIN2A	rs761059654-CA	0.199054	3E-32		0.028136734	[0.023-0.033] unit increase	Affymetrix [93095623] (imputed)	N
1021	chrX	57170781	57170781	rs144226500	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	Xp11.21	SPIN2A, FAAH2	rs144226500-AT	0.3	5E-9		1.05	1.03-1.06	Illumina [12557761] (imputed)	N
1021	chrX	57204074	57204076	rs139196246	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	Xp11.21		rs139196246-G	0.22918	3E-11		0.014905532	[0.011-0.019] unit increase	Affymetrix [93095623] (imputed)	N
1021	chrX	57215337	57215338	rs140451948	30842574	Luciano M	2019-03-06	Mol Psychiatry	The influence of X chromosome variants on trait neuroticism.	Neuroticism	405,274 European ancestry individuals	NA	Xp11.21	NR	rs140451948-A	0.0362	1E-6		0.0242	[0.015-0.034] unit increase	Illumina [1686693] (imputed)	N
1022	chrX	57309129	57309130	rs139470886	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		Xp11.21	SPIN2A, SPIN2B, SPIN3	rs139470886-A	NR	6E-19		0.1657	NR unit decrease	NR [NR] (imputed)	N
1022	chrX	57348522	57348523	rs7058676	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	Xp11.21		rs7058676-T	0.297519	3E-27		0.0195109	[0.016-0.023] unit decrease	Illumina [13479295] (imputed)	N
1022	chrX	57348522	57348523	rs7058676	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	Xp11.21	FAAH2	rs7058676-?	NR	2E-29		0.03290996	[0.027-0.039] unit decrease	Illumina [27896057] (imputed)	N
1023	chrX	57434969	57434969	rs200375559	35023831	Chong M	2022-01-13	Elife	GWAS and ExWAS of blood Mitochondrial DNA copy number identifies 71 loci and highlights a potential causal role in dementia.	Mitochondrial DNA copy number	395,718 British, Irish, Other White, South Asian, African ancestry individuals	NA	Xp11.21	NR	rs200375559-CTATT	0.491126	3E-10		0.0133	[0.0092-0.0174] unit decrease	Affymetrix [23037915] (imputed)	N
1023	chrX	57439944	57439945	rs5914101	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Menarche (age at onset)	76,831 European ancestry individuals	NA	Xp11.21	FAAH2	rs5914101-?	NR	2E-9		0.033	[0.022-0.043] unit increase	Illumina [12039492]	N
1023	chrX	57448901	57448902	rs12688558	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	Xp11.21	FAAH2	rs12688558-G	0.24078	3E-20		0.019849699	[0.016-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1023	chrX	57487840	57487841	rs143125856	30842574	Luciano M	2019-03-06	Mol Psychiatry	The influence of X chromosome variants on trait neuroticism.	Neuroticism	405,274 European ancestry individuals	NA	Xp11.21	NR	rs143125856-A	0.964	2E-6		0.0234	[0.014-0.033] unit decrease	Illumina [1686693] (imputed)	N
1023	chrX	57528652	57528653	rs34525763	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	Xp11.21		rs34525763-T	NR	2E-8		0.0167	[0.011-0.023] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1024	chrX	57559580	57559581	rs4826580	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	Xp11.21		rs4826580-T	NR	4E-9		1.0453861	[1.03003386073169-1.06096700044454]	Illumina [8919992] (imputed)	N
1027	chrX	57979352	57979353	rs73226048	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	Xp11.21		rs73226048-C	NR	2E-17		0.0487	[0.038-0.06] unit increase	Affymetrix, Illumina [25845091] (imputed)	N
1027	chrX	58001698	58001699	rs5946791	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	Xp11.21		rs5946791-G	0.317375125	4E-11		0.05290394	[0.037-0.069] unit increase	Illumina [13429769] (imputed)	N
1027	chrX	58002333	58002334	rs111763724	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Male-pattern baldness	9,009 European ancestry cases, 8,491 European ancestry controls	NA	Xp11.21	ZXDA	rs111763724-?	NR	6E-20		1.6750418	[1.49-1.88]	Illumina [13436641] (imputed)	N
1027	chrX	58005479	58005480	rs147829649	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		Xp11.21	NR	rs147829649-G	NR	1E-31		0.2829	NR unit decrease	NR [NR] (imputed)	N
1028	chrX	58097006	58097007	rs73209413	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		Xp11.21	ZXDA	rs73209413-C	NR	1E-10		0.201	NR unit decrease	NR [NR] (imputed)	N
1028	chrX	58131945	58131946	rs139087387	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	Xp11.1	intergenic	rs139087387-A	0.0708967	3E-283		0.73494	[0.71-0.76] unit increase	NR [19129689] (imputed)	N
1028	chrX	58194650	58194651	rs5989004	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		Xp11.1	NR	rs5989004-T	NR	2E-8		0.1239	NR unit decrease	NR [NR] (imputed)	N
1029	chrX	58218962	58218963	rs5947414	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	Xp11.1		rs5947414-C	0.320555	2E-9		0.0181334	[0.012-0.024] unit increase	Illumina [13478928] (imputed)	N
1029	chrX	58256541	58256542	rs150535953	30842574	Luciano M	2019-03-06	Mol Psychiatry	The influence of X chromosome variants on trait neuroticism.	Neuroticism	405,274 European ancestry individuals	NA	Xp11.1	NR	rs150535953-A	0.9653	8E-6		0.023	[0.013-0.033] unit decrease	Illumina [1686693] (imputed)	N
1029	chrX	58256541	58256542	rs150535953	28272467	Heilmann-Heimbach S	2017-03-08	Nat Commun	Meta-analysis identifies novel risk loci and yields systematic insights into the biology of male-pattern baldness.	Male-pattern baldness	10,846 European ancestry cases, 11,672 European ancestry controls	NA	Xp11.1		rs150535953-G	0.04	1E-17		0.41	[0.31-0.51] unit decrease	Affymetrix, Illumina [8004650] (imputed)	N
1029	chrX	58279747	58279748	rs55998530	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	Xp11.1	KRT8P17	rs55998530-A	0.9767	5E-6		0.3426	[0.19-0.49] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1029	chrX	58323844	58323845	rs12854631	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	Xp11.1	NR	rs12854631-?	NR	1E-6	(Native Hawaiian)	0.8076	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1056	chrX	61739960	61739961	rs10745180	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	Xq11.1		rs10745180-G	NR	2E-11		0.0156	[0.011-0.02] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1056	chrX	61771175	61771176	rs140470540	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	Xq11.1		rs140470540-G	NR	8E-17		0.026	[0.02-0.032] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
1056	chrX	61771175	61771176	rs140470540	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	Xq11.1		rs140470540-G	NR	3E-20		0.0287	[0.023-0.035] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
1056	chrX	61799839	61799840	rs768186064	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	Xq11.1	RP11-3D23.1	rs768186064-T	0.0017	6E-6		1.3236	[0.75-1.9] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1057	chrX	61946728	61946729	rs7473757	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	Xq11.1	NR	rs7473757-?	NR	4E-6	(Native Hawaiian)	0.7668	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1058	chrX	62062375	62062376	rs140914450	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		Xq11.1	NR	rs140914450-G	NR	6E-20		0.1686	NR unit decrease	NR [NR] (imputed)	N
1062	chrX	62625198	62625199	rs10127000	24024966	Teumer A	2013-08-14	J Clin Periodontol	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (Mean PAL)	up to 4,032 European ancestry individuals	NA	Xq11.1	LOC92249	rs10127000-T	0.06	6E-6	(Age 20-60 years)	0.1006	[0.057-0.144] unit decrease	Affymetrix, Illumina [up to 17585496] (imputed)	N
1063	chrX	62674230	62674231	rs73225255	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	Xq11.1	intergenic	rs73225255-T	0.0382999	3E-20		0.0534357	[0.042-0.065] unit increase	NR [19129689] (imputed)	N
1065	chrX	62937826	62937827	rs111810219	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		Xq11.1	ARHGEF9	rs111810219-A	NR	1E-14		0.2067	NR unit decrease	NR [NR] (imputed)	N
1066	chrX	63167506	63167507	rs146447930	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	Xq11.2	NR	rs146447930-C	0.98626	3E-16		0.0710861	[0.053-0.089] unit increase	Affymetrix [16577313] (imputed)	N
1067	chrX	63265011	63265012	rs146225865	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	Xq11.2	NR	rs146225865-G	0.986815	3E-25		0.0943468	[0.076-0.113] unit increase	Affymetrix [16577424] (imputed)	N
1071	chrX	63755443	63755444	rs146112277	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		Xq11.2	NR	rs146112277-A	NR	1E-11		0.1346	NR unit decrease	NR [NR] (imputed)	N
1076	chrX	64367018	64367019	rs7064929	20932654	Kerns SL	2010-10-05	Int J Radiat Oncol Biol Phys	Genome-wide association study to identify single nucleotide polymorphisms (SNPs) associated with the development of erectile dysfunction in African-American men after radiotherapy for prostate cancer.	Erectile dysfunction and prostate cancer treatment	27 African American cases, 52 African American controls	NA	Xq11.2	KIAA1166	rs7064929-?	0.17	7E-7		13.65	[NR]	Affymetrix [512497]	N
1076	chrX	64405168	64405169	rs6624142	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		Xq11.2	ZC4H2	rs6624142-C	NR	4E-13		0.07931	NR unit decrease	NR [NR] (imputed)	N
1079	chrX	64859399	64859400	rs143755874	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		Xq12	MSN	rs143755874-A	NR	4E-9		0.1862	NR unit decrease	NR [NR] (imputed)	N
1080	chrX	64993424	64993425	rs5965019	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		Xq12	NR	rs5965019-A	NR	3E-12		0.08455	NR unit increase	NR [NR] (imputed)	N
1081	chrX	65052139	65052140	rs138876904	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		Xq12	NR	rs138876904-T	NR	3E-12		0.2704	NR unit increase	NR [NR] (imputed)	N
1081	chrX	65057243	65057244	rs145644385	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	Xq12	intergenic	rs145644385-G	0.00550342	5E-12		0.102745	[0.074-0.132] unit decrease	NR [19129689] (imputed)	N
1081	chrX	65083246	65083247	rs147154263	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		Xq12	VSIG4	rs147154263-T	NR	4E-58		0.4266	NR unit decrease	NR [NR] (imputed)	N
1081	chrX	65129041	65129057	rs201818205	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	Xq12		rs201818205-T	NR	5E-8		0.0201	[0.013-0.027] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
1082	chrX	65147973	65147974	rs148215228	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	Xq12	intergenic	rs148215228-T	0.0414169	3E-262		0.265106	[0.25-0.28] unit increase	NR [19129689] (imputed)	N
1082	chrX	65158143	65158144	rs5965061	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	Xq12		rs5965061-T	NR	9E-10		0.0131	[0.009-0.0172] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
1082	chrX	65217955	65217956	rs73213393	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		Xq12	NR	rs73213393-A	NR	5E-18		0.3322	NR unit decrease	NR [NR] (imputed)	N
1082	chrX	65223426	65223427	rs7061210	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	Xq12	RP6-159A1.3	rs7061210-A	0.131278	5E-10		0.016919281	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1082	chrX	65225503	65225504	rs147424714	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	Xq12		rs147424714-T	NR	2E-15		0.0655	[0.049-0.082] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1082	chrX	65225503	65225504	rs147424714	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	Xq12	RP6-159A1.3	rs147424714-T	0.01488	7E-16		0.06593639	[0.05-0.082] unit increase	Affymetrix [93095623] (imputed)	N
1082	chrX	65225503	65225504	rs147424714	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	Xq12	RP6-159A1.3	rs147424714-T	0.014867	8E-12		0.055701282	[0.04-0.072] unit decrease	Affymetrix [93095623] (imputed)	N
1082	chrX	65228260	65228261	rs5964484	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	Xq12		rs5964484-A	0.131284	5E-14		0.020508591	[0.015-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1082	chrX	65248391	65248392	rs5965085	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	Xq12		rs5965085-A	NR	1E-9		0.0172	[0.012-0.023] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
1082	chrX	65248391	65248392	rs5965085	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	Xq12	VSIG4	rs5965085-A	0.152586	7E-20		0.023751032	[0.019-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
1082	chrX	65252952	65252953	rs147670940	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		Xq12	VSIG4	rs147670940-T	NR	3E-11		0.1684	NR unit decrease	NR [NR] (imputed)	N
1082	chrX	65263821	65263822	rs585168	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	Xq12	VSIG4	rs585168-T	0.129468	9E-20		0.025349492	[0.02-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
1082	chrX	65271350	65271351	rs684631	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	Xq12	RP11-30M20.1	rs684631-C	0.130495	4E-10		0.017523455	[0.012-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1084	chrX	65489058	65489059	rs150998684	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	Xq12		rs150998684-A	NR	1E-8		0.031	[0.02-0.042] unit increase	Affymetrix, Illumina [20528270] (imputed)	N
1085	chrX	65541955	65541956	rs145867342	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		Xq12	HEPH, VSIG4	rs145867342-T	NR	1E-44		0.324	NR unit decrease	NR [NR] (imputed)	N
1085	chrX	65551147	65551148	rs112069404	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		Xq12	HEPH, VSIG4	rs112069404-A	NR	5E-20		0.155	NR unit increase	NR [NR] (imputed)	N
1085	chrX	65606692	65606693	rs5965182	20932654	Kerns SL	2010-10-05	Int J Radiat Oncol Biol Phys	Genome-wide association study to identify single nucleotide polymorphisms (SNPs) associated with the development of erectile dysfunction in African-American men after radiotherapy for prostate cancer.	Erectile dysfunction and prostate cancer treatment	27 African American cases, 52 African American controls	NA	Xq12	HEPH	rs5965182-?	0.12	6E-6		11.73	[NR]	Affymetrix [512497]	N
1085	chrX	65632418	65632419	rs79798752	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		Xq12	EDA2R, HEPH	rs79798752-C	NR	3E-15		0.08221	NR unit increase	NR [NR] (imputed)	N
1085	chrX	65655869	65655870	rs767810019	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	Xq12	RP11-747I9.1	rs767810019-A	0.00621300000000002	2E-11		0.08057846	[0.057-0.104] unit decrease	Affymetrix [93095623] (imputed)	N
1086	chrX	65779624	65779626	rs201967581	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	Xq12		rs201967581-G	NR	1E-10		0.0141	[0.0098-0.0184] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
1086	chrX	65779639	65779640	rs74805556	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	Xq12	NR	rs74805556-T	0.7239260000000001	1E-60		0.0398542	[0.035-0.045] unit increase	Affymetrix [16577313] (imputed)	N
1087	chrX	65852278	65852279	rs12850857	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Estradiol levels	206,927 European ancestry men	NA	Xq12	NR	rs12850857-G	0.809948	5E-11		0.0049969	[0.0035-0.0065] unit increase	Affymetrix [16582268] (imputed)	N
1087	chrX	65883682	65883683	rs73221538	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	Xq12	NR	rs73221538-C	0.877361	2E-67		0.055959	[0.05-0.062] unit increase	Affymetrix [16577424] (imputed)	N
1087	chrX	65897735	65897736	rs141086308	34337532	Fantus RJ	2021-05-25	Eur Urol Open Sci	Genetic Susceptibility for Low Testosterone in Men and Its Implications in Biology and Screening: Data from the UK Biobank.	Low testosterone levels	13,409 European ancestry male cases, 98,267 European ancestry male controls	4,426 European ancestry male cases, 32,800 European ancestry male controls	Xq12	NR	rs141086308-C	0.98	2E-10		1.6	NR	NR [8853336] (imputed)	N
1087	chrX	65926041	65926042	rs73221553	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		Xq12	NR	rs73221553-A	NR	1E-10		0.1373	NR unit increase	NR [NR] (imputed)	N
1088	chrX	65933284	65933285	rs73221556	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		Xq12	EDA2R, HEPH	rs73221556-A	NR	5E-178		0.5266	NR unit decrease	NR [NR] (imputed)	N
1088	chrX	65977550	65977550	rs779177660	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	Xq12		rs779177660-ATCTATCTCTCTCTCTC	NR	2E-11		0.0245	[0.017-0.032] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
1089	chrX	66069205	66069206	rs5964573	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	Xq12	Intergenic	rs5964573-T	NR	8E-6		0.0165065	[0.0093-0.0237] unit increase	Illumina [13520550] (imputed)	N
1089	chrX	66114130	66114131	rs144393202	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		Xq12	NR	rs144393202-A	NR	7E-18		0.2917	NR unit increase	NR [NR] (imputed)	N
1090	chrX	66300914	66300914	rs200644307	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Male-pattern baldness	9,009 European ancestry cases, 8,491 European ancestry controls	NA	Xq12	EDA2R, AR	rs200644307-?	NR	1E-247		2.277	[2.160-2.400]	Illumina [13436641] (imputed)	N
1090	chrX	66307105	66307105	rs35176586	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	Xq12		rs35176586-GTT	NR	1E-9		0.0145	[0.0098-0.0192] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
1090	chrX	66307105	66307105	rs35176586	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	Xq12		rs35176586-GTT	NR	1E-9		0.0138	[0.0093-0.0183] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
1090	chrX	66312645	66312646	rs73225807	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	Xq12	NR	rs73225807-A	0.0685750000000001	4E-9		0.021840904	[0.015-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1091	chrX	66337544	66337545	rs17216820	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		Xq12	NR	rs17216820-T	NR	6E-26		0.1946	NR unit increase	NR [NR] (imputed)	N
1091	chrX	66382380	66382381	rs73225861	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	Xq12	NR	rs73225861-G	0.06856	1E-9		0.02244202	[0.015-0.03] unit increase	Affymetrix [93095623] (imputed)	N
1092	chrX	66460330	66460331	rs146636673	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		Xq12	NR	rs146636673-C	NR	3E-9		0.183	NR unit increase	NR [NR] (imputed)	N
1092	chrX	66481799	66481800	rs12558842	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		Xq12	AR	rs12558842-C	NR	5E-178		0.5427	NR unit decrease	NR [NR] (imputed)	N
1092	chrX	66490123	66490124	rs4258142	26926045	Adhikari K	2016-03-01	Nat Commun	A genome-wide association scan in admixed Latin Americans identifies loci influencing facial and scalp hair features.	Balding	6,357 Latin American individuals	NA	Xq12	AR, EDA2R	rs4258142-?	NR	2E-8				Illumina [9143600] (imputed)	N
1092	chrX	66510983	66510984	rs6625163	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		Xq12	NR	rs6625163-G	NR	1E-300		0.53	NR unit decrease	NR [NR] (imputed)	N
1092	chrX	66510983	66510984	rs6625163	18849991	Richards JB	2008-10-12	Nat Genet	Male-pattern baldness susceptibility locus at 20p11.	Male-pattern baldness	578 European ancestry cases, 547 European ancestry controls	1,351 European ancestry cases, 2,485 European ancestry controls	Xq12	AR	rs6625163-A	NR	5E-11		3.3	[2.31-4.71]	Affymetrix [370102]	N
1092	chrX	66555111	66555112	rs142169094	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		Xq12	NR	rs142169094-G	NR	2E-13		0.08356	NR unit increase	NR [NR] (imputed)	N
1092	chrX	66563017	66563018	rs2497938	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		Xq12	NR	rs2497938-C	NR	1E-300		0.53	NR unit decrease	NR [NR] (imputed)	N
1092	chrX	66563017	66563018	rs2497938	22693459	Li R	2012-05-31	PLoS Genet	Six novel susceptibility Loci for early-onset androgenetic alopecia and their unexpected association with common diseases.	Male-pattern baldness	3,891 European ancestry cases, 8,915 European ancestry controls	NA	Xq12	AR	rs2497938-T	0.850	2E-91		2.2	[2.04-2.37]	Affymetrix, Illumina [2391230] (imputed)	N
1092	chrX	66563017	66563018	rs2497938	22032556	Brockschmidt FF	2011-10-27	Br J Dermatol	Susceptibility variants on chromosome 7p21.1 suggest HDAC9 as a new candidate gene for male-pattern baldness.	Male-pattern baldness	581 European ancestry male cases, 617 European ancestry male controls	461 European ancestry male cases, 151 European ancestry male controls	Xq12	AR, EDA2R	rs2497938-?	NR	3E-22		6.5	[4.30-9.82]	Illumina [560387]	N
1092	chrX	66565670	66565671	rs2497942	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting insulin	151,013 European ancestry individuals	NA	Xq12	AR	rs2497942-C	0.8142	2E-6		0.0113	[0.0058-0.0168] unit decrease	Affymetrix, Illumina [32635793] (imputed)	N
1092	chrX	66566036	66566037	rs73227823	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		Xq12	NR	rs73227823-G	NR	3E-13		0.1452	NR unit increase	NR [NR] (imputed)	N
1093	chrX	66601318	66601319	rs761180516	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	Xq12	NR	rs761180516-A	0.00145099999999998	2E-36		0.209023	[0.18-0.24] unit increase	Affymetrix [16578495] (imputed)	N
1093	chrX	66605514	66605515	rs113308129	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	Xq12	intergenic	rs113308129-A	0.0567485	5E-99		0.102995	[0.093-0.113] unit increase	NR [19129689] (imputed)	N
1093	chrX	66627439	66627440	rs2497911	28272467	Heilmann-Heimbach S	2017-03-08	Nat Commun	Meta-analysis identifies novel risk loci and yields systematic insights into the biology of male-pattern baldness.	Male-pattern baldness	10,846 European ancestry cases, 11,672 European ancestry controls	NA	Xq12		rs2497911-C	0.19	1E-320		0.8	[0.76-0.84] unit increase	Affymetrix, Illumina [8004650] (imputed)	N
1093	chrX	66670565	66670566	rs28833542	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	Xq12	intergenic	rs28833542-A	0.0780803	3E-283		0.357927	[0.34-0.37] unit decrease	NR [19129689] (imputed)	N
1093	chrX	66701866	66701867	rs62604342	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		Xq12	NR	rs62604342-G	NR	4E-9		0.1614	NR unit increase	NR [NR] (imputed)	N
1094	chrX	66825356	66825357	rs5919393	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	Xq12	NR	rs5919393-T	NR	2E-16		1.06	[1.05-1.07]	Affymetrix, Illumina [29235255] (imputed)	N
1095	chrX	66920178	66920179	rs776715248	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Estradiol levels	206,927 European ancestry men	NA	Xq12	NR	rs776715248-C	0.0013370000000000326	8E-14		0.075656	[0.056-0.095] unit increase	Affymetrix [16582268] (imputed)	N
1095	chrX	66920178	66920179	rs776715248	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	Xq12	NR	rs776715248-C	0.001391000000000031	5E-50		0.409627	[0.36-0.46] unit increase	Affymetrix [16583148] (imputed)	N
1095	chrX	66920178	66920179	rs776715248	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	Xq12	NR	rs776715248-C	0.0013180000000000414	2E-73		0.647573	[0.58-0.72] unit increase	Affymetrix [16577424] (imputed)	N
1095	chrX	66942624	66942625	rs5031002	19060910	Sabatti C	2008-12-07	Nat Genet	Genome-wide association analysis of metabolic traits in a birth cohort from a founder population.	LDL cholesterol	4,763 Northern Finnish founder individuals	NA	Xq12	AR	rs5031002-A	0.02	2E-7		0.3	[0.18-0.41] mmol/l increase	Illumina [329091]	N
1095	chrX	66963706	66963707	rs113222435	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		Xq12	NR	rs113222435-T	NR	2E-10		0.1603	NR unit increase	NR [NR] (imputed)	N
1096	chrX	67003583	67003584	rs5919427	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		Xq12	OPHN1	rs5919427-C	NR	5E-178		0.3457	NR unit decrease	NR [NR] (imputed)	N
1096	chrX	67005507	67005508	rs114255570	34255042	Schmitz D	2021-07-13	J Clin Endocrinol Metab	Genome-Wide Association Study of Estradiol Levels, and the Causal Effect of Estradiol on Bone Mineral Density.	Estradiol levels	13,367 European ancestry male cases, 134,323 European ancestry male controls	NA	Xq12	AR	rs114255570-A	0.077	6E-9		0.899	[0.867-0.931]	Affymetrix [7871717] (imputed)	N
1096	chrX	67021549	67021550	rs5919432	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	Xq12	NR	rs5919432-T	0.8	1E-9		1.04	[1.03-1.06]	Illumina [20370935] (imputed)	N
1096	chrX	67021549	67021550	rs5919432	21743467	Kote-Jarai Z	2011-07-10	Nat Genet	Seven prostate cancer susceptibility loci identified by a multi-stage genome-wide association study.	Prostate cancer	6,621 European ancestry cases, 6,939 European ancestry controls	22,957 European ancestry cases, 23,234 European ancestry controls, 420 East Asian ancestry cases, 433 East Asian ancestry controls, 112 African American cases, 298 African American controls, 7,140 cases, 5,455 controls	Xq12	AR	rs5919432-A	0.81	1E-8		1.06	[1.02-1.12]	NR [2600000] (imputed)	N
1097	chrX	67139062	67139063	rs148652266	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		Xq12	NR	rs148652266-A	NR	8E-45		0.5063	NR unit decrease	NR [NR] (imputed)	N
1097	chrX	67154205	67154206	rs73536079	27992416	Lane JM	2016-12-19	Nat Genet	Genome-wide association analyses of sleep disturbance traits identify new loci and highlight shared genetics with neuropsychiatric and metabolic traits.	Excessive daytime sleepiness	111,648 European ancestry individuals	NA	Xq12	AR, OPHN1	rs73536079-T	0.002	4E-8		0.634	[0.41-0.86] unit increase	Affymetrix [up to 73355677] (imputed)	N
1097	chrX	67158737	67158738	rs73212804	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		Xq12	OPHN1	rs73212804-T	NR	2E-10		0.1317	NR unit increase	NR [NR] (imputed)	N
1097	chrX	67174030	67174031	rs17302236	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		Xq12	OPHN1	rs17302236-C	NR	4E-24		0.1799	NR unit increase	NR [NR] (imputed)	N
1098	chrX	67363800	67363801	rs7061504	29146897	Pirastu N	2017-11-17	Nat Commun	GWAS for male-pattern baldness identifies 71 susceptibility loci explaining 38% of the risk.	Male-pattern baldness	25,662 British ancestry cases, 17,928 British ancestry controls	13,367 European ancestry cases, 11,851 European ancestry controls, 3,436 cases, 2,435 controls	Xq12	AR	rs7061504-A	NR	3E-35		0.40279487	[0.34-0.47] unit increase	Affymetrix [27512692] (imputed)	N
1098	chrX	67363800	67363801	rs7061504	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		Xq12	OPHN1	rs7061504-G	NR	2E-38		0.1939	NR unit increase	NR [NR] (imputed)	N
1099	chrX	67397638	67397639	rs1475417	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	Xq12	OPHN1	rs1475417-A	0.108539	4E-178		0.102621	[0.096-0.11] unit increase	NR [19129689] (imputed)	N
1099	chrX	67403722	67403723	rs7052964	34337532	Fantus RJ	2021-05-25	Eur Urol Open Sci	Genetic Susceptibility for Low Testosterone in Men and Its Implications in Biology and Screening: Data from the UK Biobank.	Low testosterone levels	13,409 European ancestry male cases, 98,267 European ancestry male controls	4,426 European ancestry male cases, 32,800 European ancestry male controls	Xq12	NR	rs7052964-G	0.18	2E-19		1.21	NR	NR [8853336] (imputed)	N
1099	chrX	67425332	67425333	rs73212868	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		Xq12	OPHN1	rs73212868-A	NR	4E-22		0.3038	NR unit decrease	NR [NR] (imputed)	N
1099	chrX	67496001	67496002	rs140488081	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		Xq12	OPHN1, STARD8, YIPF6	rs140488081-T	NR	5E-61		0.3972	NR unit decrease	NR [NR] (imputed)	N
1100	chrX	67595913	67595914	rs5965561	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		Xq12	OPHN1, YIPF6	rs5965561-C	NR	1E-18		0.1432	NR unit increase	NR [NR] (imputed)	N
1101	chrX	67640548	67640549	rs73212896	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	Xq12	NR	rs73212896-C	0.901456	3E-11		0.0126296	[0.0088-0.0165] unit increase	Affymetrix [16578495] (imputed)	N
1102	chrX	67789907	67789908	rs5980809	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	Xq13.1	intergenic	rs5980809-G	0.0872413	7E-49		0.0585	[0.051-0.066] unit increase	NR [19129689] (imputed)	N
1103	chrX	67919943	67919944	rs56008802	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	Xq13.1		rs56008802-A	NR	6E-25		0.0325	[0.026-0.039] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1103	chrX	67919943	67919944	rs56008802	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	Xq13.1	STARD8	rs56008802-A	0.10084	2E-31		0.036269072	[0.03-0.042] unit increase	Affymetrix [93095623] (imputed)	N
1103	chrX	67919943	67919944	rs56008802	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	Xq13.1	STARD8	rs56008802-A	0.10083	5E-29		0.034787055	[0.029-0.041] unit decrease	Affymetrix [93095623] (imputed)	N
1103	chrX	67919943	67919944	rs56008802	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	Xq13.1	STARD8	rs56008802-A	0.100839	2E-53		0.04764941	[0.042-0.054] unit increase	Affymetrix [93095623] (imputed)	N
1103	chrX	67932641	67932642	rs147676232	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	Xq13.1	NR	rs147676232-C	0.98699	1E-8		0.0459525	[0.03-0.062] unit increase	Affymetrix [16583148] (imputed)	N
1103	chrX	67932641	67932642	rs147676232	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	Xq13.1	NR	rs147676232-C	0.9869	2E-11		0.0674853	[0.047-0.088] unit increase	Affymetrix [16577424] (imputed)	N
1105	chrX	68201041	68201042	rs140291579	30894546	Ivarsdottir EV	2019-03-20	Nat Commun	Sequence variation at ANAPC1 accounts for 24% of the variability in corneal endothelial cell density.	Corneal endothelial cell shape (percentage of hexagonally shaped cells)	6,125 Icelandic ancestry individuals	NA	Xq13.1	NR	rs140291579-A		8E-7		0.607	[NR] unit increase	Illumina [NR]	N
1106	chrX	68377125	68377126	rs5937157	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Neuropsychiatric disorders	19,099 European ancestry attention deficit hyperactivity disorder cases, 18,381 European ancestry autism spectrum disorder cases, 20,352 European ancestry bipolar disorder cases, 170,756 European ancestry major depressive disorder cases, 33,640 European ancestry schizophrenia cases, 466,420 European ancestry controls	NA	Xq13.1	NR	rs5937157-T	NR	9E-9		5.748	NR z score decrease	NR [NR]	N
1106	chrX	68377125	68377126	rs5937157	25056061	Ripke S	2014-07-22	Nature	Biological insights from 108 schizophrenia-associated genetic loci.	Schizophrenia	32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	1,513 European ancestry cases, 66,236 European ancestry controls	Xq13.1	PJA1	rs5937157-G	0.241	2E-10		1.066098	[1.05-1.09]	Affymetrix, Illumina [9005918] (imputed)	N
1106	chrX	68377203	68377204	rs62606711	29483656	Pardinas AF	2018-02-26	Nat Genet	Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.	Schizophrenia	40,675 European ancestry cases, 64,643 European ancestry controls	1,651 European ancestry cases, 4,111 cases, 142,717 European ancestry controls, 11,507 controls	Xq13.1	PJA1	rs62606711-?	NR	1E-12		1.075	[1.06-1.09]	Illumina [8000000] (imputed)	N
1106	chrX	68377936	68377937	rs5936660	31268507	Periyasamy S	2019-07-03	JAMA Psychiatry	Association of Schizophrenia Risk With Disordered Niacin Metabolism in an Indian Genome-wide Association Study.	Schizophrenia	816 Indian ancestry cases, 900 Indian ancestry controls, 505 Indian ancestry cases and 871 Indian ancestry controls from 405 families, up to 36,989 European and unknown ancestry cases, up to 113,075 European and unknown ancestry controls	NA	Xq13.1	NR	rs5936660-?	NR	9E-7				Illumina [up to 5582932] (imputed)	N
1106	chrX	68381263	68381264	rs11539157	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	Xq13.1		rs11539157-A	NR	9E-9		0.0092	[0.0061-0.0123] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1106	chrX	68381263	68381264	rs11539157	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	Xq13.1		rs11539157-A	NR	2E-8		0.0127	[0.0082-0.0172] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1106	chrX	68381263	68381264	rs11539157	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	Xq13.1	PJA1	rs11539157-A	0.237964	5E-12		0.015205044	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1106	chrX	68381263	68381264	rs11539157	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	Xq13.1	PJA1	rs11539157-A	0.237947	3E-14		0.016717302	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1106	chrX	68381263	68381264	rs11539157	29273807	Turcot V	2017-12-22	Nat Genet	Protein-altering variants associated with body mass index implicate pathways that control energy intake and expenditure in obesity.	Body mass index	up to 449,889 European ancestry individuals, up to 29,398 South Asian ancestry individuals, up to 27,610 African American individuals, up to 8,839 East Asian individuals, up to 10,772 Hispanic ancestry individuals	up to 196,766 European ancestry individuals	Xq13.1	PJA1	rs11539157-C	0.7821	2E-10		0.0139	[0.0096-0.0182] unit increase	Illumina [246328]	N
1106	chrX	68382835	68382836	rs7067170	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	Xq13.1	NR	rs7067170-?	NR	3E-10		1.07047	[1.05-1.09]	Affymetrix, Illumina [12447948] (imputed)	N
1106	chrX	68382835	68382836	rs7067170	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	Xq13.1	PJA1	rs7067170-G	0.760173	4E-10		0.017154	[0.012-0.023] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1106	chrX	68386135	68386135	rs143977821	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Rubella	12,000 European ancestry cases, 71,597 European ancestry controls	NA	Xq13.1	NR	rs143977821-?	NR	3E-6		0.0772	[0.045-0.11] unit decrease	Illumina [at least 560000] (imputed)	N
1107	chrX	68543003	68543004	rs17302855	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	Xq13.1	LINC00269	rs17302855-A	0.536708	1E-12		0.0133325	[0.0096-0.017] unit increase	NR [13737936] (imputed)	N
1108	chrX	68650281	68650282	rs1408783	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	Xq13.1	EDA	rs1408783-?	NR	8E-6	(orotic acid)	0.59323525	[0.33-0.85] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1109	chrX	68716552	68716553	rs1408781	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	Xq13.1	EDA	rs1408781-?	NR	7E-6	(PC 34:1)	0.62383395	[0.35-0.9] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1109	chrX	68751720	68751721	rs3747463	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	Xq13.1	FAM155B	rs3747463-C	0.6391	3E-9		1.0320705		Affymetrix [11880941] (imputed)	N
1109	chrX	68754736	68754737	rs12844850	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	Xq13.1		rs12844850-A	0.3614	4E-20		0.013	[0.0091-0.0169] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
1109	chrX	68783437	68783438	rs4844177	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	Xq13.1	NR	rs4844177-?	NR	2E-22				Illumina [at least 7383741] (imputed)	N
1109	chrX	68784700	68784701	rs55846652	29364747	Jonsson L	2018-01-01	J Dent Res	Rare and Common Variants Conferring Risk of Tooth Agenesis.	Tooth agenesis (maxillary lateral incisors)	600 Icelandic ancestry cases, 338,554 Icelandic ancestry controls (includes non-array genotyped, whole-genome imputed individuals)	102 European ancestry cases, 204 European ancestry controls, 32 European and other ancestry cases, 2,696 European and other ancestry controls	Xq13.1	EDA	rs55846652-T	0.672	5E-12		1.83	[1.54-2.17]	Illumina [NR] (imputed)	N
1109	chrX	68798702	68798703	rs11796357	23704328	Fatemifar G	2013-05-23	Hum Mol Genet	Genome-wide association study of primary tooth eruption identifies pleiotropic loci associated with height and craniofacial distances.	Primary tooth development (time to first tooth eruption)	11,118 European ancestry individuals		Xq13.1	FAM155E, EDA	rs11796357-G	NR	3E-22		0.25	[0.2-0.3] unit decrease	Illumina [2446724] (imputed)	N
1109	chrX	68798702	68798703	rs11796357	23704328	Fatemifar G	2013-05-23	Hum Mol Genet	Genome-wide association study of primary tooth eruption identifies pleiotropic loci associated with height and craniofacial distances.	Primary tooth development (number of teeth)	11,513 European ancestry individuals		Xq13.1	FAM155E, EDA	rs11796357-G	NR	7E-19		0.199	[0.16-0.24] unit increase	Illumina [2446724] (imputed)	N
1109	chrX	68805317	68805318	rs4844096	20195514	Pillas D	2010-02-26	PLoS Genet	Genome-wide association study reveals multiple loci associated with primary tooth development during infancy.	Primary tooth development (number of teeth)	5,752 European ancestry related individuals	NA	Xq13.1	EDA	rs4844096-G	0.42	5E-11				Illumina [300766]	N
1110	chrX	68830934	68830935	rs138274479	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Intraocular pressure	101,939 European ancestry cases	NA	Xq13.1	NR	rs138274479-G		1E-8		0.09	[0.051-0.129] unit increase	NR [NR]	N
1110	chrX	68892915	68892916	rs5936487	20195514	Pillas D	2010-02-26	PLoS Genet	Genome-wide association study reveals multiple loci associated with primary tooth development during infancy.	Primary tooth development (time to first tooth eruption)	5,919 European ancestry related individuals	NA	Xq13.1	EDA	rs5936487-G	0.39	6E-11				Illumina [300766]	N
1110	chrX	68901736	68901737	rs7065712	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	Xq13.1	EDA	rs7065712-A	0.365471	1E-15		0.018204	[0.014-0.023] unit decrease	NR [19129689] (imputed)	N
1111	chrX	68959270	68959271	rs2520402	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	Xq13.1	NR	rs2520402-?	NR	4E-18				Illumina [at least 7383741] (imputed)	N
1111	chrX	69001853	69001854	rs2804362	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Monobrow	69,284 European ancestry individuals	NA	Xq13.1	EDA	rs2804362-?	NR	9E-36		0.037	[0.043-0.031] unit decrease	Illumina [12039491] (imputed)	N
1111	chrX	69017222	69017223	rs2520378	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 1)	4,680 European ancestry individuals	3,566 European ancestry individuals	Xq13.1		rs2520378-G	0.218987617	4E-10				Illumina [7417619] (imputed)	N
1111	chrX	69063591	69063592	rs771846080	30842574	Luciano M	2019-03-06	Mol Psychiatry	The influence of X chromosome variants on trait neuroticism.	Neuroticism	405,274 European ancestry individuals	NA	Xq13.1	NR	rs771846080-C	1.0E-4	6E-6		0.419	[0.24-0.6] unit increase	Illumina [1686693] (imputed)	N
1112	chrX	69175269	69175270	rs5936526	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	Xq13.1	NR	rs5936526-?	NR	4E-8				Illumina [at least 7383741] (imputed)	N
1113	chrX	69244749	69244750	rs1327479	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein EDA	5,363 Icelandic ancestry individuals	NA	Xq13.1		rs1327479-G	0.1613	5E-142		0.500884	[0.46-0.54] unit increase	Illumina [7506463] (imputed)	N
1114	chrX	69407455	69407456	rs13343081	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	Xq13.1	NR	rs13343081-?	NR	4E-12				Affymetrix [NR]	N
1116	chrX	69676601	69676602	rs71909380	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	Xq13.1	DLG3	rs71909380-C	0.208601	1E-27		0.02564285	[0.021-0.03] unit increase	Affymetrix [93095623] (imputed)	N
1117	chrX	69733948	69733949	rs5980712	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	Xq13.1		rs5980712-G	0.389545	2E-21		0.018389976	[0.015-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1117	chrX	69812908	69812910	rs749583248	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	Xq13.1		rs749583248-A	NR	2E-8		0.0104	[0.0067-0.0141] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
1118	chrX	69947254	69947255	rs186036328	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	Xq13.1	TEX11	rs186036328-A	0.0058	8E-6		0.8925	[0.5-1.28] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1118	chrX	69947254	69947255	rs186036328	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	Xq13.1	TEX11	rs186036328-A	0.0058	8E-6		0.8925	[0.5-1.28] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1119	chrX	69994877	69994878	rs4844261	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Uterine fibroids	21,024 European ancestry cases, 237,694 European ancestry controls, 14,475 East Asian ancestry cases, 65,733 East Asian ancestry controls	NA	Xq13.1		rs4844261-G	NR	4E-17		0.093	[0.071-0.115] unit decrease	Affymetrix, Illumina [25795146] (imputed)	N
1119	chrX	70050183	70050184	rs146176796	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SMIM13	5,353 Icelandic ancestry individuals	NA	Xq13.1		rs146176796-T	0.01335	3E-13		0.159876	[0.12-0.2] unit increase	Illumina [7506463] (imputed)	N
1119	chrX	70073158	70073159	rs6525433	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular volume	108,256 Japanese ancestry individuals	NA	Xq13.1	TEX11	rs6525433-?	NR	3E-8		0.02127	[0.014-0.029] unit decrease novel	Illumina [6108953] (imputed)	N
1119	chrX	70107553	70107554	rs35930747	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	Xq13.1		rs35930747-G	NR	1E-8		0.0114	[0.0075-0.0153] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1119	chrX	70107553	70107554	rs35930747	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	Xq13.1		rs35930747-G	0.395906	4E-8		0.0124747	[0.008-0.0169] unit increase	Illumina [13479924] (imputed)	N
1120	chrX	70139849	70139850	rs6625711	25217961	Al Olama AA	2014-09-14	Nat Genet	A meta-analysis of 87,040 individuals identifies 23 new susceptibility loci for prostate cancer.	Prostate cancer	34,379 European ancestry cases, 33,164 European ancestry controls, 5,327 African ancestry cases, 5,136 African ancestry controls, 2,563 Japanese ancestry cases, 4,391 Japanese ancestry controls, 1,034 Latino cases, 1,046 Latino controls	NA	Xq13.1	SLC7A	rs6625711-A	0.41	6E-7		1.04	[1.03-1.06]	Affymetrix, Illumina [up to 16852405] (imputed)	N
1120	chrX	70139849	70139850	rs6625711	25217961	Al Olama AA	2014-09-14	Nat Genet	A meta-analysis of 87,040 individuals identifies 23 new susceptibility loci for prostate cancer.	Prostate cancer	34,379 European ancestry cases, 33,164 European ancestry controls, 5,327 African ancestry cases, 5,136 African ancestry controls, 2,563 Japanese ancestry cases, 4,391 Japanese ancestry controls, 1,034 Latino cases, 1,046 Latino controls	NA	Xq13.1	SLC7A	rs6625711-A	0.41	6E-12	(EA)	1.07	[1.05-1.08]	Affymetrix, Illumina [up to 16852405] (imputed)	N
1120	chrX	70139907	70139908	rs371707439	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	Xq13.1	NR	rs371707439-A	NR	1E-14		1.054	[1.04-1.07]	Affymetrix, Illumina [29235255] (imputed)	N
1120	chrX	70142029	70142030	rs5937025	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Prostate cancer	11,599 European ancestry cases, 199,628 European ancestry controls, 5,672 East Asian ancestry cases, 84,660 East Asian ancestry controls	NA	Xq13.1		rs5937025-T	NR	4E-8		0.0466	[0.03-0.063] unit decrease	Affymetrix, Illumina [25775424] (imputed)	N
1120	chrX	70146397	70146398	rs4360450	31649266	Gallagher CS	2019-10-24	Nat Commun	Genome-wide association and epidemiological analyses reveal common genetic origins between uterine leiomyomata and endometriosis.	Uterine fibroids	20,406 European ancestry cases, 223,918 European ancestry controls	15,068 European ancestry cases, 43,587 European ancestry controls	Xq13.1	MED12	rs4360450-A	0.37	2E-18		1.08	[1.06-1.10]	Affymetrix, Illumina [8662096] (imputed)	N
1120	chrX	70204140	70204141	rs7880414	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	Xq13.1	NR	rs7880414-C		2E-8		0.05	[0.031-0.069] unit increase	NR [NR]	N
1120	chrX	70204140	70204141	rs7880414	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	Xq13.1	SLC7A3	rs7880414-?		3E-16				Affymetrix, Illumina [NR] (imputed)	N
1121	chrX	70334232	70334233	rs12837203	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	Xq13.1	NR	rs12837203-G	0.675879	2E-11		0.0192885	[0.013-0.025] unit increase	Affymetrix [16580851] (imputed)	N
1121	chrX	70355258	70355260	rs34862123	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	Xq13.1	MED12	rs34862123-C	0.321704	1E-42		0.027263796	[0.023-0.031] unit increase	Affymetrix [93095623] (imputed)	N
1121	chrX	70361966	70361967	rs36072155	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	Xq13.1	MED12	rs36072155-A	0.320583	6E-70		0.035220016	[0.031-0.039] unit increase	Affymetrix [93095623] (imputed)	N
1121	chrX	70361966	70361967	rs36072155	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	Xq13.1	MED12	rs36072155-A	0.320585	6E-64		0.033634942	[0.03-0.038] unit increase	Affymetrix [93095623] (imputed)	N
1121	chrX	70361966	70361967	rs36072155	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	Xq13.1	MED12	rs36072155-A	0.320651	1E-79		0.03745355	[0.034-0.041] unit increase	Affymetrix [93095623] (imputed)	N
1121	chrX	70361966	70361967	rs36072155	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	Xq13.1	MED12	rs36072155-A	0.320641	3E-76		0.036638126	[0.033-0.041] unit increase	Affymetrix [93095623] (imputed)	N
1121	chrX	70362489	70362490	rs62609610	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	Xq13.1	NLGN3	rs62609610-A	0.320445	3E-9		0.0111011	[0.0075-0.0147] unit increase	Affymetrix [93095623] (imputed)	N
1121	chrX	70362489	70362490	rs62609610	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	Xq13.1	NLGN3	rs62609610-A	0.32043	1E-9		0.011901555	[0.0081-0.0158] unit increase	Affymetrix [93095623] (imputed)	N
1122	chrX	70407982	70407983	rs4844289	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	Xq13.1	NR	rs4844289-G	0.38	3E-12		1.04	[1.03-1.05]	Illumina [20370935] (imputed)	N
1122	chrX	70407982	70407983	rs4844289	25217961	Al Olama AA	2014-09-14	Nat Genet	A meta-analysis of 87,040 individuals identifies 23 new susceptibility loci for prostate cancer.	Prostate cancer	34,379 European ancestry cases, 33,164 European ancestry controls, 5,327 African ancestry cases, 5,136 African ancestry controls, 2,563 Japanese ancestry cases, 4,391 Japanese ancestry controls, 1,034 Latino cases, 1,046 Latino controls	NA	Xq13.1	NLGN3, BCYRN1	rs4844289-G	0.39	9E-8		1.04	[1.03-1.06]	Affymetrix, Illumina [up to 16852405] (imputed)	N
1122	chrX	70407982	70407983	rs4844289	25217961	Al Olama AA	2014-09-14	Nat Genet	A meta-analysis of 87,040 individuals identifies 23 new susceptibility loci for prostate cancer.	Prostate cancer	34,379 European ancestry cases, 33,164 European ancestry controls, 5,327 African ancestry cases, 5,136 African ancestry controls, 2,563 Japanese ancestry cases, 4,391 Japanese ancestry controls, 1,034 Latino cases, 1,046 Latino controls	NA	Xq13.1	NLGN3, BCYRN1	rs4844289-G	0.39	1E-9	(EA)	1.05	[1.04-1.07]	Affymetrix, Illumina [up to 16852405] (imputed)	N
1122	chrX	70448029	70448030	rs57434549	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	Xq13.1		rs57434549-T	NR	1E-14		0.0114	[0.0085-0.0143] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
1123	chrX	70624794	70624795	rs182705894	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	Xq13.1	NR	rs182705894-?	NR	3E-6	(Native Hawaiian)	0.8778	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1124	chrX	70775029	70775030	rs779311134	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	Xq13.1	OGT	rs779311134-G	0.251547	8E-11		0.015497742	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1125	chrX	70854273	70854274	rs4844299	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	Xq13.1		rs4844299-C	0.552481	3E-9		0.00999641	[0.0067-0.0133] unit increase	Illumina [13479295] (imputed)	N
1125	chrX	70854273	70854274	rs4844299	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	Xq13.1	BCYRN1	rs4844299-?	NR	8E-9		0.015622699	[0.01-0.021] unit increase	Illumina [27896057] (imputed)	N
1129	chrX	71329506	71329507	rs191209518	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	Xq13.1	NR	rs191209518-?	NR	3E-8	(AA)	1.2269	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1129	chrX	71354910	71354911	rs6625947	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	Xq13.1	NHSL2	rs6625947-T	0.265945	1E-9		0.0129613485	[0.0088-0.0171] unit increase	Affymetrix [93095623] (imputed)	N
1129	chrX	71362903	71362904	rs7472405	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	Xq13.1	NHSL2	rs7472405-T	0.730915	4E-9		0.012481452	[0.0083-0.0166] unit decrease	Affymetrix [93095623] (imputed)	N
1129	chrX	71394286	71394287	rs112004685	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	Xq13.1	FLJ44635, PIN4	rs112004685-G	NR	7E-6		0.520591	[0.29-0.75] unit decrease	Illumina [at least 950000] (imputed)	N
1129	chrX	71399337	71399338	rs72630041	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	Xq13.1	NR	rs72630041-G	0.19165699999999997	2E-11		0.0182719	[0.013-0.024] unit increase	Affymetrix [16577313] (imputed)	N
1129	chrX	71401226	71401227	rs56318905	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	Xq13.1		rs56318905-C	NR	1E-8		0.0133	[0.0088-0.0178] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1130	chrX	71439697	71439697	rs762344518	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	Xq13.1	NR	rs762344518-CA	0.186203	5E-11		0.00927221	[0.0065-0.012] unit increase	Affymetrix [16578495] (imputed)	N
1130	chrX	71495388	71495388	rs34563981	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	Xq13.1		rs34563981-TCTA	NR	8E-10		0.0125	[0.0086-0.0164] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1130	chrX	71509443	71509443	rs34687188	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	Xq13.1		rs34687188-AT	NR	6E-9		0.0118	[0.0079-0.0157] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
1130	chrX	71510679	71510680	rs2984338	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	Xq13.1		rs2984338-C	0.549	1E-8		0.0153604	[0.01-0.021] unit decrease	Illumina [13478928] (imputed)	N
1130	chrX	71523649	71523650	rs2368671	34069769	Al-Sarraj Y	2021-05-18	Genes (Basel)	Family-Based Genome-Wide Association Study of Autism Spectrum Disorder in Middle Eastern Families.	Autism spectrum disorder	487 Middle Eastern ancestry individuals from 171 families	NA	Xq13.1	PIN4, ERCC6L, RPS4X, CITED1, HDAC8	rs2368671-T	0.081	6E-6		1.15	[1.06-1.24]	Illumina [516320]	N
1130	chrX	71528359	71528360	rs2984348	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Sodium levels	127,304 Japanese ancestry individuals	NA	Xq13.1	CITED1, HDAC8	rs2984348-?	NR	6E-35		0.0396	[0.033-0.046] unit increase novel	Illumina [6108953] (imputed)	N
1130	chrX	71528359	71528360	rs2984348	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Chloride levels	126,402 Japanese ancestry individuals	NA	Xq13.1	CITED1, HDAC8	rs2984348-?	NR	8E-21		0.03022	[0.024-0.037] unit increase	Illumina [6108953] (imputed)	N
1133	chrX	71841428	71841429	rs6624621	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 14, intercanthal width)	2,187 European ancestry individuals	NA	Xq13.1	NR	rs6624621-G	0.3864	2E-7		0.1379	[0.086-0.19] unit increase	Illumina [10677593] (imputed)	N
1136	chrX	72289466	72289467	rs11093404	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 14, intercanthal width)	2,187 European ancestry individuals	NA	Xq13.2	PABPC1L2B-AS1	rs11093404-A	0.2417	1E-8		0.1745	[0.11-0.23] unit increase	Illumina [10677593] (imputed)	N
1136	chrX	72289466	72289467	rs11093404	27560520	Shaffer JR	2016-08-25	PLoS Genet	Genome-Wide Association Study Reveals Multiple Loci Influencing Normal Human Facial Morphology.	Eye morphology	2,447 European ancestry individuals	671 European ancestry individuals	Xq13.2	Intergenic	rs11093404-A	0.2427	4E-8	(Intercanthal width)	0.4272	[0.28-0.57] unit increase	Illumina [34985077] (imputed)	N
1136	chrX	72320472	72320473	rs5981806	30842574	Luciano M	2019-03-06	Mol Psychiatry	The influence of X chromosome variants on trait neuroticism.	Neuroticism	405,274 European ancestry individuals	NA	Xq13.2	NR	rs5981806-T	0.2517	5E-6		0.0096	[0.0055-0.0137] unit increase	Illumina [1686693] (imputed)	N
1146	chrX	73541495	73541496	rs5937272	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	Xq13.2		rs5937272-A	NR	1E-13		0.0174	[0.013-0.022] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
1146	chrX	73554938	73554939	rs631276	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	Xq13.2	intergenic	rs631276-A	0.413984	3E-9		0.0132182	[0.0089-0.0176] unit decrease	NR [19129689] (imputed)	N
1146	chrX	73641568	73641569	rs6647476	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	Xq13.2		rs6647476-C	NR	8E-19		0.0171	[0.013-0.021] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
1148	chrX	73839774	73839775	rs147003578	33836062	Kong XZ	2021-04-09	Cereb Cortex	Large-Scale Phenomic and Genomic Analysis of Brain Asymmetrical Skew.	Brain asymmetrical skew (horizontal)	33,996 European ancestry individuals	NA	Xq13.2	RLIM	rs147003578-A		4E-7		0.0026167	[0.0016-0.0036] unit increase	Affymetrix [9904141] (imputed)	N
1148	chrX	73923183	73923184	rs138782081	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	Xq13.3	RNU6-330P	rs138782081-T	0.9978	4E-6		1.0926	[0.63-1.56] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1149	chrX	74023598	74023599	rs34025894	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	Xq13.3	KIAA2022	rs34025894-G	0.819386	2E-11		0.01640821	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1149	chrX	74044197	74044198	rs775228154	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	Xq13.3	KIAA2022	rs775228154-A	0.0011	4E-6		1.6954	[0.97-2.42] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1150	chrX	74100463	74100464	rs16991826	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	Xq13.3	ABCB7	rs16991826-?	NR	7E-6	(TAG 50:3)	0.43740878	[0.25-0.63] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1150	chrX	74142722	74142723	rs59447377	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	Xq13.3		rs59447377-T	NR	7E-12		0.0264	[0.019-0.034] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
1151	chrX	74224326	74224327	rs5937930	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	Xq13.3	KIAA2022	rs5937930-?	NR	9E-6	(TAG 50:3)	0.42849374	[0.24-0.62] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1151	chrX	74229179	74229180	rs5937931	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	Xq13.3		rs5937931-A	NR	3E-8		0.038	[0.025-0.051] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1151	chrX	74243454	74243455	rs200724327	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	Xq13.3		rs200724327-G	0.082629	2E-9		0.023690734	[0.016-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
1151	chrX	74243454	74243455	rs200724327	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	Xq13.3		rs200724327-G	0.082681	1E-14		0.0344642	[0.027-0.041] unit decrease	Affymetrix [93095623] (imputed)	N
1151	chrX	74243454	74243455	rs200724327	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	Xq13.3		rs200724327-G	0.082672	4E-15		0.030326348	[0.023-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
1152	chrX	74320163	74320164	rs6647628	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	Xq13.3		rs6647628-A	NR	1E-9		0.0234	[0.016-0.031] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
1153	chrX	74452660	74452661	rs55705705	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	Xq13.3		rs55705705-C	0.9397312	1E-9		0.02472651	[0.017-0.033] unit increase	Affymetrix [93095623] (imputed)	N
1154	chrX	74617487	74617488	rs2367177	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	Xq13.3	NR	rs2367177-?	NR	7E-27				Affymetrix [NR]	N
1158	chrX	75127169	75127169	rs201634149	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	Xq13.3	RP11-212D3.4	rs201634149-CT	0.060847	3E-9		0.02428139	[0.016-0.032] unit increase	Affymetrix [93095623] (imputed)	N
1158	chrX	75127169	75127169	rs201634149	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	Xq13.3	RP11-212D3.4	rs201634149-CT	0.0607220000000001	5E-11		0.0288771	[0.022-0.036] unit increase	Affymetrix [93095623] (imputed)	N
1158	chrX	75148011	75148011	rs781044037	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	Xq13.3		rs781044037-TA	NR	8E-9		0.0254	[0.017-0.034] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
1159	chrX	75266211	75266212	rs782801974	30842574	Luciano M	2019-03-06	Mol Psychiatry	The influence of X chromosome variants on trait neuroticism.	Neuroticism	405,274 European ancestry individuals	NA	Xq13.3	NR	rs782801974-T	2.0E-4	9E-6		0.3448	[0.19-0.5] unit increase	Illumina [1686693] (imputed)	N
1159	chrX	75347433	75347434	rs5937496	19734901	van Es MA	2009-09-06	Nat Genet	Genome-wide association study identifies 19p13.3 (UNC13A) and 9p21.2 as susceptibility loci for sporadic amyotrophic lateral sclerosis.	Amyotrophic lateral sclerosis	2,323 European ancestry cases, 9,013 European ancestry controls	2,532 European ancestry cases, 5,940 European ancestry controls	Xq13.3	NR	rs5937496-?	0.13	6E-7		1.38	[NR]	Illumina [292768]	N
1160	chrX	75385541	75385542	rs6647951	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Potassium levels	132,938 Japanese ancestry individuals	NA	Xq13.3	MAGEE2, PBDC1	rs6647951-?	NR	3E-8		0.01848	[0.012-0.025] unit increase novel	Illumina [6108953] (imputed)	N
1160	chrX	75417010	75417011	rs5937507	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	Xq13.3	NR	rs5937507-?	NR	2E-8	(Native Hawaiian)	1.2018	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1162	chrX	75634973	75634974	rs5938548	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	Xq13.3	NR	rs5938548-?	NR	2E-7	(Native Hawaiian)	1.0852	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1165	chrX	76046997	76046998	rs191870197	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	Xq21.1	NR	rs191870197-?	NR	1E-6	(Native Hawaiian)	0.9067	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1166	chrX	76246565	76246566	rs5938812	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	Xq21.1		rs5938812-A	NR	8E-9		0.0277	[0.018-0.037] unit decrease	Affymetrix, Illumina [20535842] (imputed)	N
1167	chrX	76311125	76311126	rs4644421	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	Xq21.1	NR	rs4644421-?	NR	1E-6	(Native Hawaiian)	0.9434	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1168	chrX	76436874	76436875	rs5938929	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	Xq21.1	MIR325, FGF16	rs5938929-?	NR	1E-42		0.041131224	[0.035-0.047] unit decrease	Illumina [27896057] (imputed)	N
1168	chrX	76509483	76509486	rs782672239	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gastric ulcer	6,293 European ancestry cases, 467,985 European ancestry controls, 12,650 East Asian ancestry cases, 161,227 East Asian ancestry controls	NA	Xq21.1		rs782672239-T	NR	4E-8		0.4768	[0.31-0.65] unit decrease	Affymetrix, Illumina [25842546] (imputed)	N
1169	chrX	76648651	76648652	rs111558269	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	Xq21.1		rs111558269-T	0.40121	6E-41		0.0225547	[0.019-0.026] unit increase	Illumina [13479295] (imputed)	N
1171	chrX	76870469	76870469	rs112397470	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	Xq21.1		rs112397470-GGTT	NR	3E-9		0.0101	[0.0068-0.0134] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
1171	chrX	76870485	76870485	rs201753992	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	Xq21.1	ATRX	rs201753992-GTTG	0.251943	7E-9		0.012620832	[0.0083-0.0169] unit increase	Affymetrix [93095623] (imputed)	N
1171	chrX	76870485	76870485	rs201753992	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	Xq21.1	ATRX	rs201753992-GTTG	0.251963	3E-17		0.018423144	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1173	chrX	77104863	77104864	rs4826198	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Graves' disease	1,678 European ancestry cases, 456,942 European ancestry controls, 2,809 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	Xq21.1		rs4826198-G	NR	3E-8		0.1628	[0.11-0.22] unit increase	Affymetrix, Illumina [25841587] (imputed)	N
1173	chrX	77169574	77169575	rs12837147	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	Xq21.1	ATP7A	rs12837147-?	NR	3E-30		0.030727377	[0.025-0.036] unit decrease	Illumina [27896057] (imputed)	N
1174	chrX	77325117	77325118	rs5913634	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	Xq21.1	PGK1	rs5913634-A	0.719124	3E-14		0.016008358	[0.012-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1175	chrX	77344409	77344410	rs151280158	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	Xq21.1		rs151280158-T	0.104497	1E-13		0.0302836	[0.022-0.038] unit increase	Illumina [13479924] (imputed)	N
1175	chrX	77382281	77382281	rs16657	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	Xq21.1		rs16657-TACTC	NR	1E-8		0.0093	[0.0062-0.0124] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
1175	chrX	77404333	77404334	rs2982584	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Graves' disease	2,809 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	Xq21.1		rs2982584-G	0.605330627	3E-8		0.14501356	[0.094-0.196] unit increase	Illumina [13429311] (imputed)	N
1176	chrX	77473670	77473671	rs5912570	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Potassium levels	132,938 Japanese ancestry individuals	NA	Xq21.1	TAF9B, CYSLTR1	rs5912570-?	NR	3E-11		0.02224	[0.016-0.029] unit increase novel	Illumina [6108953] (imputed)	N
1177	chrX	77595536	77595537	rs62612828	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	Xq21.1	NR	rs62612828-?	NR	1E-6	(Native Hawaiian)	0.9761	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1178	chrX	77815127	77815128	rs773167497	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	Xq21.1	UBE2V1P7	rs773167497-T	0.9981	6E-6		0.8453	[0.48-1.21] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1179	chrX	77933932	77933933	rs139306621	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	Xq21.1	NR	rs139306621-?	NR	2E-7	(AA)	0.9347	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1180	chrX	78110059	78110060	rs188085108	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	Xq21.1	NR	rs188085108-?	NR	3E-6	(Native Hawaiian)	0.7341	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1181	chrX	78179954	78179955	rs144238538	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Rheumatoid arthritis	8,255 European ancestry cases, 409,001 European ancestry controls, 5,348 East Asian ancestry cases, 173,268 East Asian ancestry controls	NA	Xq21.1		rs144238538-T	NR	4E-9		0.1045	[0.07-0.139] unit increase	Affymetrix, Illumina [25835038] (imputed)	N
1181	chrX	78179954	78179955	rs144238538	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Rheumatoid arthritis	5,348 East Asian ancestry cases, 173,268 East Asian ancestry controls	NA	Xq21.1		rs144238538-T	0.437643159	4E-8		0.101569206	[0.065-0.138] unit increase	Illumina [13429970] (imputed)	N
1181	chrX	78229043	78229044	rs57033802	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hypothyroidism	30,155 European ancestry cases, 379,986 European ancestry controls, 1,114 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	Xq21.1		rs57033802-T	NR	1E-13		0.1297	[0.095-0.164] unit decrease	Affymetrix, Illumina [25801083] (imputed)	N
1182	chrX	78251779	78251782	rs201234360	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Graves' disease	1,678 European ancestry cases, 456,942 European ancestry controls, 2,809 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	Xq21.1		rs201234360-A	NR	1E-21		0.2328	[0.19-0.28] unit increase	Affymetrix, Illumina [25841587] (imputed)	N
1182	chrX	78303469	78303470	rs147428850	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	Xq21.1	NR	rs147428850-?	NR	8E-7	(Native Hawaiian)	0.8192	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1182	chrX	78343308	78343309	rs6615512	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Rheumatoid arthritis	4,199 Japanese ancestry cases, 208,254 Japanese ancestry controls	NA	Xq21.1		rs6615512-T	NR	6E-9		1.1271846	[1.08270807331127-1.17348814036726]	Illumina [8919992] (imputed)	N
1182	chrX	78366126	78366127	rs6619397	33310728	Ha E	2020-12-11	Ann Rheum Dis	Large-scale meta-analysis across East Asian and European populations updated genetic architecture and variant-driven biology of rheumatoid arthritis, identifying 11 novel susceptibility loci.	Rheumatoid arthritis	14,361 European ancestry cases, 43,923 European ancestry controls, 8,267 East Asian ancestry cases, 244,741 East Asian ancestry controls	NA	Xq21.1		rs6619397-A	NR	6E-12		1.11	[1.08-1.15]	NR [13810676] (imputed)	N
1183	chrX	78407859	78407859	rs201689059	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Graves' disease	2,809 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	Xq21.1		rs201689059-AGTTACAGAATGCCT	0.533436372	8E-22		0.23726337	[0.19-0.29] unit decrease	Illumina [13429311] (imputed)	N
1183	chrX	78493659	78493660	rs4134408	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Graves' disease	2,176 Japanese ancestry cases, 210,277 Japanese ancestry controls	NA	Xq21.1		rs4134408-C	NR	4E-17		0.7945902	[0.753083063596273-0.838385048555476]	Illumina [8919992] (imputed)	N
1183	chrX	78497117	78497118	rs5912838	31050781	Zhao SX	2019-05-03	JAMA Netw Open	Assessment of Molecular Subtypes in Thyrotoxic Periodic Paralysis and Graves Disease Among Chinese Han Adults: A Population-Based Genome-Wide Association Study.	Thyrotoxic hypokalemic periodic paralysis and Graves disease	171 Han Chinese ancestry cases, 2,160 Han Chinese ancestry controls	362 Han Chinese ancestry cases, 1,089 Han Chinese ancestry controls	Xq21.1	ITM2A	rs5912838-?	0.58	6E-8		1.62	[1.36-1.93]	Illumina [2752055] (imputed)	N
1183	chrX	78497117	78497118	rs5912838	23612905	Zhao SX	2013-04-29	Hum Mol Genet	Robust evidence for five new Graves' disease risk loci from a staged genome-wide association analysis.	Graves' disease	1,442 Han Chinese ancestry cases, 1,468 Han Chinese ancestry controls	7,891 Han Chinese ancestry cases, 8,351 Han Chinese ancestry controls	Xq21.1	ITM2A, GPR174	rs5912838-?	0.58	2E-33		1.32	[1.25-1.37]	Illumina [8019905] (imputed)	N
1184	chrX	78532412	78532413	rs5912268	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	Xq21.1	NR	rs5912268-?	NR	9E-7	(Native Hawaiian)	0.8072	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1184	chrX	78630856	78630857	rs7886910	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	Xq21.1	ITM2A	rs7886910-C	0.934279	3E-12		0.033142	[0.024-0.042] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1184	chrX	78643197	78643198	rs11314467	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	Xq21.1		rs11314467-G	NR	2E-19		0.0158	[0.012-0.019] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1185	chrX	78649192	78649193	rs1474563	18391951	Gudbjartsson DF	2008-04-06	Nat Genet	Many sequence variants affecting diversity of adult human height.	Height	30,968 European ancestry individuals	8,541 European ancestry individuals	Xq21.1	ITM2A	rs1474563-T	0.58	3E-6		3.5	[1.93-5.07] % s.d. increase	Affymetrix, Illumina [up to 304226]	N
1185	chrX	78655776	78655777	rs59648890	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	Xq21.1		rs59648890-G	NR	8E-121		0.0332	[0.03-0.036] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1185	chrX	78675582	78675583	rs5959351	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Nose size	67,023 European ancestry individuals	NA	Xq21.1	ITM2A, TBX22	rs5959351-?	NR	2E-7		0.018	[0.011-0.025] unit increase	Illumina [12039491] (imputed)	N
1185	chrX	78702403	78702404	rs149152591	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	Xq21.1		rs149152591-C	0.061685	2E-10		0.0221608	[0.015-0.029] unit increase	Illumina [13479295] (imputed)	N
1185	chrX	78758257	78758258	rs4825980	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	Xq21.1	NR	rs4825980-?	NR	3E-20				Affymetrix [NR]	N
1187	chrX	78930121	78930122	rs181869920	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	Xq21.1	NR	rs181869920-?	NR	9E-11	(Native Hawaiian)	1.3873	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1193	chrX	79750157	79750157	rs56066681	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	Xq21.1		rs56066681-ACG	0.676089	6E-10		0.012650451	[0.0086-0.0167] unit decrease	Affymetrix [93095623] (imputed)	N
1194	chrX	79846654	79846694	rs762832834	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	Xq21.1		rs762832834-A	0.042103	3E-10		0.0263996	[0.018-0.035] unit increase	Illumina [13479295] (imputed)	N
1195	chrX	79956548	79956549	rs28417201	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Photic sneeze reflex	32,446 European ancestry cases, 67,249 European ancestry controls	NA	Xq21.1	BRWD3	rs28417201-?	NR	9E-9		1.057	[1.037-1.077]	Illumina [13729857] (imputed)	N
1195	chrX	79988502	79988503	rs146883672	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (severe respiratory symptoms vs population)	1,128 European ancestry cases, 679,531 European ancestry controls, 245 Hispanic or Latin American cases, 94,237 Hispanic or Latin American controls, 74 Black or African American cases, 22,383 Black or African American controls	NA	Xq21.1		rs146883672-?	NR	5E-7		0.5627409	[0.35-0.78] unit increase	Illumina [9906551] (imputed)	N
1195	chrX	79991753	79991754	rs45610632	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Angina pectoris	30,025 European ancestry cases, 440,906 European ancestry controls, 14,007 East Asian ancestry cases, 145,158 East Asian ancestry controls	NA	Xq21.1		rs45610632-T	NR	2E-9		0.0521	[0.035-0.069] unit decrease	Affymetrix, Illumina [25842036] (imputed)	N
1195	chrX	80008771	80008772	rs200981902	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	Xq21.1		rs200981902-G	NR	1E-10		0.0125	[0.0088-0.0162] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
1195	chrX	80008882	80008883	rs2203205	27515689	Kerns SL	2016-07-20	EBioMedicine	Meta-analysis of Genome Wide Association Studies Identifies Genetic Markers of Late Toxicity Following Radiotherapy for Prostate Cancer.	Toxicity response to radiotherapy in prostate cancer (decreased urine stream) (time to event)	1,245 European ancestry individuals	NA	Xq21.1	intergenic	rs2203205-C	0.29	3E-6		1.74	[1.38-2.20]	NR [~ 38000000] (imputed)	N
1195	chrX	80059829	80059830	rs62605615	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Stable angina pectoris	17,894 European ancestry cases, 325,132 European ancestry controls, 18,833 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	Xq21.1		rs62605615-C	NR	4E-9		0.0477	[0.032-0.064] unit decrease	Affymetrix, Illumina [20456336] (imputed)	N
1196	chrX	80212654	80212655	rs5959758	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	Xq21.1		rs5959758-G	NR	9E-9		0.0128	[0.0085-0.0171] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
1197	chrX	80252300	80252301	rs145613719	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Unilateral cleft lip and palate	205 Asian ancestry cases, 315 European ancestry cases, 692 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	Xq21.1	NR	rs145613719-?	NR	7E-6		2.23	[2.02-2.46]	Illumina [539000] (imputed)	N
1197	chrX	80335892	80335893	rs73231003	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	Xq21.1	HMGN5	rs73231003-?		2E-9				Affymetrix, Illumina [NR] (imputed)	N
1197	chrX	80338558	80338559	rs5913398	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (severe respiratory symptoms vs population)	1,128 European ancestry cases, 679,531 European ancestry controls, 245 Hispanic or Latin American cases, 94,237 Hispanic or Latin American controls, 74 Black or African American cases, 22,383 Black or African American controls	NA	Xq21.1		rs5913398-?	NR	3E-8		0.5746994	[0.37-0.78] unit increase	Illumina [9906551] (imputed)	N
1197	chrX	80338558	80338559	rs5913398	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid pneumonia vs population)	1,004 European ancestry cases, 680,354 European ancestry controls, 218 Hispanic or Latin American cases, 94,318 Hispanic or Latin American controls, 64 Black or African American cases, 22,412 Black or African American controls	NA	Xq21.1		rs5913398-?	NR	1E-6		0.5481946	[0.33-0.77] unit increase	Illumina [9901720] (imputed)	N
1198	chrX	80471507	80471508	rs146683006	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid vs negative)	9,913 European ancestry cases, 85,072 European ancestry controls, 2,553 Hispanic or Latin American cases, 13,086 Hispanic or Latin American controls, 506 Black or African American cases, 3,110 Black or African American controls	NA	Xq21.1		rs146683006-?	NR	6E-6		0.09512927	[0.054-0.136] unit increase	Illumina [9939936] (imputed)	N
1199	chrX	80484528	80484529	rs147771334	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid pneumonia vs population)	1,004 European ancestry cases, 680,354 European ancestry controls, 218 Hispanic or Latin American cases, 94,318 Hispanic or Latin American controls, 64 Black or African American cases, 22,412 Black or African American controls	NA	Xq21.1		rs147771334-?	NR	5E-7		0.5201156	[0.32-0.72] unit decrease	Illumina [9901720] (imputed)	N
1199	chrX	80535345	80535346	rs5912487	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (hospitalized covid vs population)	613 European ancestry cases, 680,416 European ancestry controls, 140 Hispanic or Latin American cases, 94,327 Hispanic or Latin American controls, 49 Black or African American cases, 22,410 Black or African American controls	NA	Xq21.1		rs5912487-?	NR	8E-6		0.5537284	[0.31-0.8] unit decrease	Illumina [9875426] (imputed)	N
1201	chrX	80848500	80848500	rs763617870	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	Xq21.1		rs763617870-CT	NR	5E-8		0.047	[0.03-0.064] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1208	chrX	81762693	81762694	rs7062395	25130324	Cai DC	2014-08-29	Genes Brain Behav	A genome-wide search for quantitative trait loci affecting the cortical surface area and thickness of Heschl's gyrus.	Heschl's gyrus morphology	1,778 European ancestry individuals, 1,276 individuals	NA	Xq21.1	POU3F4	rs7062395-A	0.81	2E-6	(Right HG thickness)	0.0328	unit increase	Affymetrix, Illumina [4103035] (imputed)	N
1210	chrX	81965350	81965351	rs5969701	26835600	Hu Y	2016-02-02	Nat Commun	GWAS of 89,283 individuals identifies genetic variants associated with self-reporting of being a morning person.	Morning vs. evening chronotype	38,937 European ancestry morning chronotype individuals, 50,346 European ancestry evening chronotype individuals	NA	Xq21.1	NR	rs5969701-?	NR	5E-6				Illumina [7427422] (imputed)	N
1212	chrX	82277709	82277710	rs5922761	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	Xq21.1	NR	rs5922761-?	NR	2E-26				Affymetrix [NR]	N
1214	chrX	82535168	82535169	rs1410530	20889312	Wang KS	2010-10-01	Schizophr Res	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	Xq21.1	NR	rs1410530-?	NR	4E-6		1.3746	[NR]	Affymetrix [722112]	N
1215	chrX	82704454	82704455	rs213462	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	Xq21.1	POU3F4	rs213462-C	0.44999999999999996	5E-12		1.0369687		Affymetrix [11880941] (imputed)	N
1216	chrX	82711941	82711942	rs213443	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	Xq21.1		rs213443-C	0.4522	6E-10		0.013	[0.0091-0.0169] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
1216	chrX	82711941	82711942	rs213443	20889312	Wang KS	2010-10-01	Schizophr Res	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	Xq21.1	NR	rs213443-?	NR	6E-6		1.248	[NR]	Affymetrix [722112]	N
1217	chrX	82871194	82871195	rs5922838	22064162	Edwards AC	2011-11-05	Psychiatr Genet	Genome-wide association study of comorbid depressive syndrome and alcohol dependence.	Depression and alcohol dependence	467 European ancestry cases, 407 European ancestry controls	NA	Xq21.1	intergenic	rs5922838-?	NR	5E-6		2.17	[1.55-3.02]	Illumina [876476]	N
1217	chrX	82954489	82954490	rs5968205	22064162	Edwards AC	2011-11-05	Psychiatr Genet	Genome-wide association study of comorbid depressive syndrome and alcohol dependence.	Depression and alcohol dependence	467 European ancestry cases, 407 European ancestry controls	NA	Xq21.1	intergenic	rs5968205-?	NR	3E-6		2.2	[1.58-3.07]	Illumina [876476]	N
1218	chrX	82971007	82971008	rs5922858	27992416	Lane JM	2016-12-19	Nat Genet	Genome-wide association analyses of sleep disturbance traits identify new loci and highlight shared genetics with neuropsychiatric and metabolic traits.	Insomnia	up to 12,674 European ancestry male cases, up to 19,481 European ancestry female cases, up to 16,009 European ancestry male controls, up to 10,964 European ancestry female controls,	NA	Xq21.1	CYCL1	rs5922858-G	NR	1E-8		1.12	[1.07-1.16]	Affymetrix [up to 73355677] (imputed)	N
1219	chrX	83156563	83156564	rs4375148	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	Xq21.1		rs4375148-T	0.769	2E-12		0.015	[0.0091-0.0209] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
1221	chrX	83491876	83491877	rs6524280	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	Xq21.1		rs6524280-G	NR	1E-8		0.0128	[0.0085-0.0171] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1222	chrX	83523014	83523015	rs5922945	31235808	Shungin D	2019-06-24	Nat Commun	Genome-wide analysis of dental caries and periodontitis combining clinical and self-reported data.	Number of decayed, missing and filled tooth surfaces or use of dentures	14,976 European ancestry individuals with decayed, missing or filled tooth surface measurement, 11,816 Hispanic/Latino individuals with decayed, missing or filled tooth surface measurement, 77,714 European ancestry dentures cases, 383,317 European ancestry controls	NA	Xq21.1	HDX	rs5922945-T	0.34	2E-8		0.016	[0.011-0.021] unit decrease	Affymetrix, Illumina [~ 8900000] (imputed)	N
1222	chrX	83523014	83523015	rs5922945	31235808	Shungin D	2019-06-24	Nat Commun	Genome-wide analysis of dental caries and periodontitis combining clinical and self-reported data.	Dentures	77,714 European ancestry cases, 383,317 European ancestry controls	NA	Xq21.1	HDX	rs5922945-T	0.34	2E-7		0.025	[0.016-0.034] unit decrease	Affymetrix [at least 8900000] (imputed)	N
1222	chrX	83537872	83537872	rs749762267	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	Xq21.1		rs749762267-TCA	NR	1E-9		0.0115	[0.0078-0.0152] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
1223	chrX	83627533	83627534	rs145565439	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 21, depth of nasal alae)	2,187 European ancestry individuals	NA	Xq21.1	NR	rs145565439-T	0.01274	4E-6		0.5166	[0.3-0.74] unit decrease	Illumina [10677593] (imputed)	N
1224	chrX	83823420	83823421	rs1158746	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (father's age at death)	309,383 European ancestry individuals	NA	Xq21.1	NR	rs1158746-C	NR	3E-6		0.01458	[0.0085-0.0207] unit decrease	Illumina [541614]	N
1231	chrX	84772194	84772195	rs4443801	29855589	Chernus J	2018-05-31	Sci Rep	GWAS reveals loci associated with velopharyngeal dysfunction.	Velopharyngeal dysfunction	54 Hispanic or Latin American and unknown ancestry cases, 922 Hispanic or Latin American and unknown ancestry controls	NA	Xq21.2	NR	rs4443801-?	NR	6E-6		0.07776303	[NR] unit decrease	Illumina [at least 269494] (imputed)	N
1234	chrX	85095738	85095739	rs5967638	24556642	Zeng Z	2014-02-18	Caries Res	Genome-wide association study of primary dentition pit-and-fissure and smooth surface caries.	Smooth-surface caries	1006 European ancestry individuals	NA	Xq21.2	CHM	rs5967638-A	0.0658	8E-7		3.485	[NR] unit increase	Illumina [1216189] (imputed)	N
1234	chrX	85095738	85095739	rs5967638	24556642	Zeng Z	2014-02-18	Caries Res	Genome-wide association study of primary dentition pit-and-fissure and smooth surface caries.	Pit-and-Fissure caries	979 European ancestry individuals	NA	Xq21.2	CHM	rs5967638-A	0.0665	1E-6		2.019	[NR] unit increase	Illumina [1216074] (imputed)	N
1235	chrX	85201718	85201719	rs147331482	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Unilateral cleft lip and palate	205 Asian ancestry cases, 315 European ancestry cases, 692 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	Xq21.2	NR	rs147331482-?	NR	1E-6		2.86	[2.52-3.26]	Illumina [539000] (imputed)	N
1235	chrX	85296316	85296317	rs187446457	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	Xq21.2	NR	rs187446457-?	NR	8E-6		1.1382	[0.55-1.73] unit increase	Illumina [at least 560000] (imputed)	N
1237	chrX	85574989	85574990	rs4828376	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	Xq21.2		rs4828376-T	NR	4E-23		0.0135	[0.011-0.016] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1237	chrX	85574989	85574990	rs4828376	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	Xq21.2		rs4828376-T	NR	7E-16		0.0126	[0.0095-0.0157] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1238	chrX	85603960	85603961	rs4828147	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	Xq21.2		rs4828147-G	NR	6E-9		0.0065	[0.0043-0.0087] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1238	chrX	85640645	85640646	rs138637889	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	Xq21.2		rs138637889-A	0.284093	8E-10		0.0149077	[0.01-0.02] unit decrease	Illumina [13479924] (imputed)	N
1239	chrX	85758855	85758856	rs2369082	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 7)	19,670 European ancestry individuals	NA	Xq21.2		rs2369082-?	NR	1E-19				NR [9705931] (imputed)	N
1239	chrX	85811679	85811680	rs5922261	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	Xq21.2	CHM	rs5922261-?	NR	6E-6	(SM 24:1)	0.13623297	[0.077-0.195] unit increase	Affymetrix [at least 2500000] (imputed)	N
1240	chrX	85858184	85858185	rs183992155	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	Xq21.2	NR	rs183992155-?	NR	4E-7		1.3168	[0.69-1.95] unit decrease	Illumina [at least 560000] (imputed)	N
1240	chrX	85858184	85858185	rs183992155	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	Xq21.2	DACH2	rs183992155-?	NR	4E-7		3.731343	[1.99-6.99]	Illumina [13754664] (imputed)	N
1242	chrX	86192002	86192003	rs2710057	19079262	Styrkarsdottir U	2008-12-14	Nat Genet	New sequence variants associated with bone mineral density.	Bone mineral density (hip)	6,865 European ancestry individuals	8,510 European ancestry individuals	Xq21.2	NR	rs2710057-T	0.67	1E-6		0.07	[0.04-0.09] s.d. decrease	Illumina [305051]	N
1243	chrX	86307720	86307721	rs2369513	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	Xq21.31	NR	rs2369513-?	NR	2E-7				Affymetrix [NR]	N
1244	chrX	86436250	86436251	rs5969117	30636644	Nazarian A	2019-01-12	Alzheimers Res Ther	Genome-wide analysis of genetic predisposition to Alzheimer's disease and related sex disparities.	Alzheimer's disease	952 European ancestry male cases, 1,789 European ancestry female cases, 6,337 European ancestry male controls, 8,402 European ancestry female controls	NA	Xq21.31	KLHL4	rs5969117-C	0.295488	1E-6	(males)	1.490488	[1.27-1.71]	Affymetrix, Illumina [2928658] (imputed)	N
1245	chrX	86519658	86519659	rs12015096	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	Xq21.31	DACH2	rs12015096-?	NR	2E-6	(TAG 56:6)	0.4456535	[0.26-0.63] unit increase	Affymetrix [at least 2500000] (imputed)	N
1245	chrX	86570172	86570173	rs2138717	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	Xq21.31	Intergenic	rs2138717-?		3E-6		1.613316	[1.33-2.00]	Illumina [9389922] (imputed)	N
1250	chrX	87190348	87190349	rs12012519	20041166	Fellay J	2009-12-24	PLoS Genet	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	Xq21.31	intergenic	rs12012519-?	NR	7E-6	(progression)			Illumina [NR]	N
1253	chrX	87567073	87567074	rs192900148	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	Xq21.31		rs192900148-A	NR	1E-6		3.8804	[2.34-5.42] unit increase	Illumina [NR] (imputed)	N
1254	chrX	87748778	87748779	rs56091881	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Effector Memory CD4-CD8- T cell Absolute Count	3,395 Sardinian (founder/genetic isolate) ancestry individuals	NA	Xq21.31		rs56091881-T	0.00677	1E-8		0.6889	[0.45-0.92] unit increase	Illumina [18332267] (imputed)	N
1254	chrX	87748778	87748779	rs56091881	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Effector Memory CD4-CD8- T cell %T cell	3,427 Sardinian (founder/genetic isolate) ancestry individuals	NA	Xq21.31		rs56091881-T	0.00671	2E-8		0.6912	[0.45-0.93] unit increase	Illumina [18349913] (imputed)	N
1254	chrX	87748778	87748779	rs56091881	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4-CD8- T cell Absolute Count	3,652 Sardinian (founder/genetic isolate) ancestry individuals	NA	Xq21.31		rs56091881-T	0.00688	1E-8		0.6582	[0.43-0.88] unit increase	Illumina [18427348] (imputed)	N
1254	chrX	87748778	87748779	rs56091881	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4-CD8- T cell %leukocyte	3,668 Sardinian (founder/genetic isolate) ancestry individuals	NA	Xq21.31		rs56091881-T	0.00685	1E-9		0.7193	[0.49-0.95] unit increase	Illumina [18430788] (imputed)	N
1254	chrX	87748778	87748779	rs56091881	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4-CD8- T cell %T cell	3,668 Sardinian (founder/genetic isolate) ancestry individuals	NA	Xq21.31		rs56091881-T	0.00685	1E-8		0.6784	[0.44-0.91] unit increase	Illumina [18430788] (imputed)	N
1254	chrX	87748778	87748779	rs56091881	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4-CD8- Natural Killer T Absolute Count	3,652 Sardinian (founder/genetic isolate) ancestry individuals	NA	Xq21.31		rs56091881-T	0.00688	5E-8		0.6627	[0.43-0.9] unit increase	Illumina [18427348] (imputed)	N
1254	chrX	87748778	87748779	rs56091881	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4-CD8- Natural Killer T %lymphocyte	3,668 Sardinian (founder/genetic isolate) ancestry individuals	NA	Xq21.31		rs56091881-T	0.00685	2E-8		0.682	[0.44-0.92] unit increase	Illumina [18430788] (imputed)	N
1254	chrX	87748778	87748779	rs56091881	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28- CD4-CD8- T cell Absolute Count	3,408 Sardinian (founder/genetic isolate) ancestry individuals	NA	Xq21.31		rs56091881-T	0.00674	4E-10		0.7943	[0.55-1.04] unit increase	Illumina [18340221] (imputed)	N
1254	chrX	87748778	87748779	rs56091881	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28- CD4-CD8- T cell %T cell	3,440 Sardinian (founder/genetic isolate) ancestry individuals	NA	Xq21.31		rs56091881-T	0.00668	8E-10		0.7961	[0.54-1.05] unit increase	Illumina [18357815] (imputed)	N
1260	chrX	88530064	88530065	rs5941160	22808956	Lyons PA	2012-07-19	N Engl J Med	Genetically distinct subsets within ANCA-associated vasculitis.	Antineutrophil cytoplasmic antibody-associated vasculitis	914 European ancestry cases, 5,259 European ancestry controls	1,454 European ancestry cases, 1,666 European ancestry controls	Xq21.31	CPXCR1	rs5941160-?	NR	2E-20				Affymetrix [NR]	N
1266	chrX	89288226	89288227	rs5941436	20125193	Cirulli ET	2010-02-03	Eur J Hum Genet	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American individuals, up to 74 South Asian ancestry individuals	NA	Xq21.31	RP13-140E4.1	rs5941436-?	NR	5E-6	(TrailsB)			Illumina [up to 563855]	N
1270	chrX	89804126	89804127	rs2755459	22808956	Lyons PA	2012-07-19	N Engl J Med	Genetically distinct subsets within ANCA-associated vasculitis.	Antineutrophil cytoplasmic antibody-associated vasculitis	914 European ancestry cases, 5,259 European ancestry controls	1,454 European ancestry cases, 1,666 European ancestry controls	Xq21.31	TGIF2LX	rs2755459-?	NR	9E-14		1.67	[NR]	Affymetrix [NR]	N
1274	chrX	90407071	90407072	rs34360385	32266521	Justice CM	2020-04-07	Hum Genet	A genome-wide association study implicates the BMP7 locus as a risk factor for nonsyndromic metopic craniosynostosis.	Metopic nonsyndromic craniosynostosis	215 European ancestry trios	194 European ancestry cases, 333 European ancestry controls	Xq21.31	TGIF2LX, PABPC5	rs34360385-C	0.74	6E-7		1.7857143	NR	Illumina [649669]	N
1276	chrX	90654612	90654613	rs181551482	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	Xq21.31	NR	rs181551482-?	NR	4E-6	(Native Hawaiian)	0.7179	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1277	chrX	90803677	90803678	rs146414513	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	Xq21.31	NR	rs146414513-?	NR	7E-7	(Native Hawaiian)	0.8791	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1277	chrX	90812717	90812718	rs6618677	22808956	Lyons PA	2012-07-19	N Engl J Med	Genetically distinct subsets within ANCA-associated vasculitis.	Antineutrophil cytoplasmic antibody-associated vasculitis	914 European ancestry cases, 5,259 European ancestry controls	1,454 European ancestry cases, 1,666 European ancestry controls	Xq21.31	PCDH11X, PABPC5, PCDH11Y	rs6618677-?	NR	4E-8		1.43	[NR]	Affymetrix [NR]	N
1282	chrX	91402219	91402220	rs2573905	19136949	Carrasquillo MM	2009-01-11	Nat Genet	Genetic variation in PCDH11X is associated with susceptibility to late-onset Alzheimer's disease.	Alzheimer's disease	844 European ancestry cases, 1,255 European ancestry controls	1,547 European ancestry cases, 1,209 European ancestry controls	Xq21.31	PCDH11X	rs2573905-?	0.46	2E-7		1.29	[1.17-1.42]	Illumina [313504]	N
1286	chrX	91907426	91907427	rs7888033	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	Xq21.31	NAP1L3	rs7888033-?	NR	2E-6	(adenosine diphosphate)	0.8110752	[0.48-1.14] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1291	chrX	92601572	92601573	rs757361398	34586716	Chen J	2021-09-29	Mol Genet Genomic Med	Heritability and genome-wide association study of blood pressure in Chinese adult twins.	Pulse pressure	137 Chinese ancestry twins	NA	Xq21.32		rs757361398-?	NR	2E-6				Illumina [7401356] (imputed)	N
1292	chrX	92750165	92750166	rs12844085	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	Xq21.32	FAM133A	rs12844085-?	NR	9E-6	(TAG 54:7)	0.20777242	[0.12-0.3] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1292	chrX	92750165	92750166	rs12844085	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	Xq21.32	FAM133A	rs12844085-?	NR	2E-6	(TAG 54:6)	0.22223668	[0.13-0.31] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1293	chrX	92927633	92927634	rs1045686	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 60)	3,566 European ancestry individuals	4,680 European ancestry individuals	Xq21.32		rs1045686-G	0.341817659	5E-8				Illumina [7417619] (imputed)	N
1294	chrX	93056887	93056888	rs149432766	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	Xq21.32	NR	rs149432766-?	NR	4E-8	(AA)	1.3762	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1297	chrX	93411239	93411240	rs193073097	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	Xq21.32		rs193073097-T	NR	2E-6		8.7605	[5.21-12.31] unit increase	Illumina [NR] (imputed)	N
1297	chrX	93445936	93445937	rs808764	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	Xq21.32	NAP1L3	rs808764-?	NR	8E-6	(serine)	1.1408733	[0.64-1.64] unit increase	Affymetrix [at least 2500000] (imputed)	N
1300	chrX	93735263	93735264	rs1582247	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	Xq21.33	NAP1L3	rs1582247-?	NR	9E-7	(uridine diphosphate)	0.27090418	[0.16-0.38] unit increase	Affymetrix [at least 2500000] (imputed)	N
1301	chrX	93962119	93962120	rs142489360	33831438	Williams JE	2021-04-05	Genomics	Key genetic variants associated with variation of milk oligosaccharides from diverse human populations.	Human milk oligosaccharide concentration (lacto-N-fucopentaose III) in non-secretors	90 European, Sub-Saharan African, Hispanic or unknown ancestry individuals	NA	Xq21.33		rs142489360-?	NR	4E-9				Illumina [1128286]	N
1309	chrX	95000140	95000141	rs188083590	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GRAMD1C	5,360 Icelandic ancestry individuals	NA	Xq21.33		rs188083590-C	0.009636	5E-12		0.0891964	[0.064-0.114] unit increase	Illumina [7506463] (imputed)	N
1310	chrX	95079869	95079870	rs5990417	20038947	Shyn SI	2009-12-29	Mol Psychiatry	Novel loci for major depression identified by genome-wide association study of Sequenced Treatment Alternatives to Relieve Depression and meta-analysis of three studies.	Major depressive disorder (broad)	3,957 European ancestry cases, 3,428 European ancestry controls	NA	Xq21.33	NR	rs5990417-T	0.83	6E-6		1.23	[NR]	Affymetrix, Perlegen [2391203] (imputed)	N
1312	chrX	95311778	95311779	rs148166269	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Yeast infection	52,218 European ancestry cases, 10,235 European ancestry controls	NA	Xq21.33	NR	rs148166269-?	NR	4E-6		0.0513	[0.03-0.073] unit decrease	Illumina [at least 560000] (imputed)	N
1330	chrX	97737677	97737678	rs112344779	34021356	Sarnowski C	2021-05-22	Hum Reprod	Large trans-ethnic meta-analysis identifies AKR1C4 as a novel gene associated with age at menarche.	Menarche (age at onset)	19,028 African ancestry individuals, 3,205 South Asian ancestry individuals, 2,095 East Asian ancestry individuals, 10,661 Hispanic/Latina individuals, 3,557 individuals	NA	Xq21.33	NR	rs112344779-T	0.006	2E-7		0.83	[0.52-1.14] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1331	chrX	97864353	97864354	rs4827947	22610502	Kennedy RB	2012-05-19	Hum Genet	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IL-1beta)	Up to 512 European ancestry individuals, up to 199 African American individuals	NA	Xq21.33	LOC100128151	rs4827947-A		3E-7	(AA)			Illumina [NR]	N
1332	chrX	98005911	98005912	rs5966882	31969989	Oni-Orisan A	2020-01-16	NPJ Genom Med	The impact of adjusting for baseline in pharmacogenomic genome-wide association studies of quantitative change.	Low density lipoprotein cholesterol levels (on statin treatment)	28,616 European ancestry individuals, 1,205 African ancestry individuals, 2,350 East Asian ancestry individuals, 2,703 Hispanic/Latino individuals	NA	Xq21.33	NR	rs5966882-C	0.008	5E-9	(EA)	0.08	[0.053-0.107] unit decrease	Affymetrix [13250765] (imputed)	N
1347	chrX	99929531	99929532	rs8780	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SYTL4	5,368 Icelandic ancestry individuals	NA	Xq22.1		rs8780-C	0.3397	2E-14		0.129284	[0.096-0.162] unit decrease	Illumina [7506463] (imputed)	N
1347	chrX	99929531	99929532	rs8780	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	Xq22.1	SYTL4	rs8780-C	0.338806	5E-14		0.014911023	[0.011-0.019] unit increase	Affymetrix [93095623] (imputed)	N
1347	chrX	99936146	99936147	rs4828043	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	Xq22.1	NR	rs4828043-A	0.36346	5E-13		0.0126916	[0.0093-0.0161] unit increase	Affymetrix [16583148] (imputed)	N
1347	chrX	99938123	99938124	rs72615558	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	Xq22.1	SYTL4	rs72615558-T	0.330994	1E-17		0.017110005	[0.013-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1347	chrX	99946824	99946825	rs6616174	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	Xq22.1	NR	rs6616174-G	0.358776	2E-12		0.0157969	[0.011-0.02] unit increase	Affymetrix [16577424] (imputed)	N
1347	chrX	99974189	99974190	rs143167745	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	Xq22.1		rs143167745-T	NR	3E-8		0.0327	[0.021-0.044] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
1347	chrX	99982935	99982936	rs6620925	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	Xq22.1		rs6620925-T	NR	6E-18		0.0134	[0.01-0.016] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
1347	chrX	99993276	99993277	rs73250616	35023831	Chong M	2022-01-13	Elife	GWAS and ExWAS of blood Mitochondrial DNA copy number identifies 71 loci and highlights a potential causal role in dementia.	Mitochondrial DNA copy number	395,718 British, Irish, Other White, South Asian, African ancestry individuals	NA	Xq22.1	NR	rs73250616-C	0.34596	3E-8		0.0097	[0.0064-0.013] unit increase	Affymetrix [23037915] (imputed)	N
1348	chrX	100019918	100019919	rs775327225	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Lean body mass	3,399 whole genome sequenced individuals, 11,801 European ancestry individuals	10,676 European ancestry individuals	Xq22.1	SYTL4	rs775327225-T	0.9986	1E-6		1.3463	[0.8-1.89] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1349	chrX	100214971	100214972	rs140386998	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	Xq22.1	NR	rs140386998-?	NR	6E-7	(Native Hawaiian)	0.7379	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1354	chrX	100875182	100875183	rs2858165	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	Xq22.1		rs2858165-G	NR	2E-15		0.0138	[0.01-0.017] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
1354	chrX	100884814	100884815	rs2752891	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	Xq22.1		rs2752891-C	NR	4E-14		0.0125	[0.0092-0.0158] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
1354	chrX	100885798	100885798	rs113380598	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	Xq22.1		rs113380598-CT	NR	1E-32		0.0263	[0.022-0.031] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
1354	chrX	100888626	100888627	rs5951368	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	Xq22.1		rs5951368-A	NR	2E-20		0.0127	[0.01-0.0154] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1355	chrX	101012847	101012848	rs7060620	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	Xq22.1	ARMCX2, NXF5	rs7060620-T	0.18569999999999998	1E-11		1.0458744		Affymetrix [11880941] (imputed)	N
1355	chrX	101016383	101016383	rs34722480	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	Xq22.1		rs34722480-AT	NR	6E-10		0.0168	[0.012-0.022] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
1356	chrX	101090952	101090953	rs6621219	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	Xq22.1		rs6621219-T	0.1754	1E-10		0.026	[0.02-0.032] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
1356	chrX	101137795	101137796	rs1046774	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	Xq22.1	NR	rs1046774-?	NR	6E-18				Affymetrix [NR]	N
1357	chrX	101286945	101286946	rs62599791	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	Xq22.1	TCEAL2	rs62599791-G	0.809587	5E-8		0.012203	[0.0079-0.0165] unit increase	NR [16516521] (imputed)	N
1359	chrX	101452225	101452226	rs5945056	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	Xq22.1	NXF2B	rs5945056-?	NR	2E-6	(DAG 36:2)	0.3648289	[0.21-0.52] unit increase	Affymetrix [at least 2500000] (imputed)	N
1359	chrX	101452225	101452226	rs5945056	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	Xq22.1	NXF2B	rs5945056-?	NR	2E-6	(CE 18:2)	0.36769587	[0.22-0.52] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1360	chrX	101612320	101612324	rs61336784	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	Xq22.1		rs61336784-G	NR	4E-9		0.0153	[0.01-0.02] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
1365	chrX	102248932	102248933	rs181927625	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NTN1	5,344 Icelandic ancestry individuals	NA	Xq22.1		rs181927625-T	0.01096	4E-12		0.12852	[0.092-0.165] unit increase	Illumina [7506463] (imputed)	N
1365	chrX	102362907	102362908	rs17331777	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	Xq22.1	NXF3	rs17331777-A	0.734	4E-8		5.496	[5.49-5.5] z-score increase	Affymetrix, Illumina [10000000] (imputed)	N
1366	chrX	102430991	102430992	rs5987510	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	Xq22.1		rs5987510-A	0.3743	2E-9		0.014	[0.01-0.018] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
1368	chrX	102742741	102742742	rs1180891	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	Xq22.2	TCEAL4	rs1180891-?	NR	9E-6	(hippuric acid)	0.8072246	[0.45-1.16] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1368	chrX	102750888	102750889	rs1180894	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	Xq22.2	NR	rs1180894-A	0.27587300000000003	1E-9		0.0111935	[0.0076-0.0148] unit increase	Affymetrix [16583148] (imputed)	N
1369	chrX	102764318	102764319	rs182043430	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	Xq22.2	RAB40A	rs182043430-T	0.313837	1E-12		0.014224974	[0.01-0.018] unit increase	Affymetrix [93095623] (imputed)	N
1369	chrX	102777313	102777314	rs59095659	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	Xq22.2		rs59095659-G	NR	4E-9		0.0126	[0.0085-0.0167] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
1369	chrX	102837824	102837825	rs2157160	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	Xq22.2		rs2157160-T	NR	9E-9		0.0078	[0.0053-0.0103] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1369	chrX	102839293	102839294	rs6621699	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	Xq22.2		rs6621699-C	NR	2E-10		0.0094	[0.0065-0.0123] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
1370	chrX	102925715	102925716	rs11092455	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	Xq22.2		rs11092455-T	NR	2E-8		0.011	[0.0071-0.0149] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1370	chrX	102925715	102925716	rs11092455	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	Xq22.2	MORF4L2	rs11092455-T	0.393532	4E-12		0.013157808	[0.0094-0.0169] unit decrease	Affymetrix [93095623] (imputed)	N
1370	chrX	102930959	102930960	rs874	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	Xq22.2	MORF4L2	rs874-G	0.400945	4E-11		0.012614619	[0.0089-0.0164] unit decrease	Affymetrix [93095623] (imputed)	N
1378	chrX	103969255	103969256	rs185459423	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	Xq22.3		rs185459423-T	NR	1E-8		0.0446	[0.029-0.06] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1378	chrX	103969255	103969256	rs185459423	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	Xq22.3		rs185459423-T	0.023101	1E-8		0.0446025	[0.029-0.06] unit increase	Illumina [13479924] (imputed)	N
1384	chrX	104798455	104798456	rs721953	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	Xq22.3	NRK	rs721953-?	NR	1E-6	(thyroxine)	0.22488202	[0.13-0.32] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1385	chrX	104938678	104938679	rs2213321	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	Xq22.3		rs2213321-T	0.025449	3E-9		0.0348109	[0.023-0.046] unit increase	Illumina [13479295] (imputed)	N
1386	chrX	104996154	104996155	rs9887672	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	Xq22.3	NRK	rs9887672-?	NR	5E-12	(thyroxine)	0.34430155	[0.25-0.44] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1387	chrX	105151663	105151664	rs5962597	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	Xq22.3	SERPINA7	rs5962597-?	NR	6E-14	(thyroxine)	0.40277192	[0.3-0.51] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1387	chrX	105152281	105152282	rs209373	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	Xq22.3	NR	rs209373-?	NR	7E-6		0.02586041	[0.015-0.037] unit decrease	Illumina [34656550] (imputed)	N
1387	chrX	105228649	105228650	rs10521507	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	Xq22.3	SERPINA7	rs10521507-?	NR	4E-6	(carnitine)	0.68613416	[0.4-0.98] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1387	chrX	105244580	105244581	rs1476421	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SERPINA7	5,362 Icelandic ancestry individuals	NA	Xq22.3		rs1476421-G	0.1852	3E-46		0.280311	[0.24-0.32] unit decrease	Illumina [7506463] (imputed)	N
1388	chrX	105271142	105271143	rs7880741	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ST14	5,341 Icelandic ancestry individuals	NA	Xq22.3		rs7880741-G	0.1277	6E-21		0.199186	[0.16-0.24] unit decrease	Illumina [7506463] (imputed)	N
1388	chrX	105276608	105276609	rs7883218	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SERPINA7	5,362 Icelandic ancestry individuals	NA	Xq22.3		rs7883218-G	0.1263	2E-68		0.398322	[0.35-0.44] unit decrease	Illumina [7506463] (imputed)	N
1388	chrX	105276608	105276609	rs7883218	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	Xq22.3	NRK	rs7883218-?	NR	1E-20	(thyroxine)	0.39482498	[0.31-0.48] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1388	chrX	105294069	105294070	rs73247912	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	Xq22.3	Intergenic	rs73247912-?		2E-6		1.853097	[1.45-2.40]	Illumina [9389922] (imputed)	N
1388	chrX	105307775	105307776	rs12687280	34524976	Nolan J	2021-09-01	Eur J Endocrinol	Genome-wide analysis of thyroid function in Australian adolescents highlights SERPINA7 and NCOA3.	Free triiodothyronine (T3) levels	2,832 European ancestry individuals	1,104 European ancestry individuals	Xq22.3		rs12687280-T	0.1263	2E-11		0.1882	pmol/L decrease	Illumina [7522526] (imputed)	N
1389	chrX	105456776	105456777	rs17332376	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	Xq22.3	SERPINA7	rs17332376-?	NR	6E-11	(thyroxine)	0.53963107	[0.38-0.7] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1389	chrX	105477753	105477754	rs140498234	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	Xq22.3	MUM1L1, CXorf57	rs140498234-?	NR	2E-10		0.060226556	[0.042-0.079] unit increase	Illumina [27896057] (imputed)	N
1389	chrX	105493918	105493919	rs379742	23143602	Whitcomb DC	2012-11-11	Nat Genet	Common genetic variants in the CLDN2 and PRSS1-PRSS2 loci alter risk for alcohol-related and sporadic pancreatitis.	Pancreatitis	676 European ancestry cases, 4,507 European ancestry controls	910 European ancestry cases, 4,170 European ancestry controls	Xq22.3	NR	rs379742-T	0.200	6E-7		1.203	[1.10-1.30]	Illumina [625739]	N
1389	chrX	105497858	105497859	rs144773023	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	Xq22.3	NR	rs144773023-?	NR	3E-6	(Native Hawaiian)	0.8408	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1390	chrX	105556353	105556354	rs55916943	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	Xq22.3	Intergenic	rs55916943-?		2E-10		2.0607867	[1.67-2.60]	Illumina [9389922] (imputed)	N
1390	chrX	105597991	105597992	rs5916984	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	Xq22.3	NR	rs5916984-?	NR	3E-6	(Native Hawaiian)	0.8342	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1390	chrX	105618759	105618760	rs5916988	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	Xq22.3	Intergenic	rs5916988-?		2E-6		1.5010903	[1.28-1.80]	Illumina [9389922] (imputed)	N
1391	chrX	105747496	105747497	rs138520829	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	Xq22.3	Intergenic	rs138520829-?		2E-7		2.1889462	[1.67-2.90]	Illumina [9389922] (imputed)	N
1391	chrX	105764914	105764915	rs139316711	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (hospitalized covid vs population)	613 European ancestry cases, 680,416 European ancestry controls, 140 Hispanic or Latin American cases, 94,327 Hispanic or Latin American controls, 49 Black or African American cases, 22,410 Black or African American controls	NA	Xq22.3		rs139316711-?	NR	2E-6		0.5299814	[0.31-0.75] unit decrease	Illumina [9875426] (imputed)	N
1392	chrX	105788359	105788360	rs10465287	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	Xq22.3	Intergenic	rs10465287-?		4E-11		1.901365	[1.59-2.28]	Illumina [9389922] (imputed)	N
1392	chrX	105828302	105828303	rs4456003	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	Xq22.3	Intergenic	rs4456003-?		8E-6		2.1720865	[1.57-3.00]	Illumina [9389922] (imputed)	N
1392	chrX	105874789	105874790	rs4355941	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	Xq22.3	CXorf57	rs4355941-?		5E-6		1.4151481	[1.23-1.63]	Illumina [9389922] (imputed)	N
1393	chrX	105974191	105974192	rs149055315	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	Xq22.3	RNF128	rs149055315-?		2E-9		2.5756361	[1.92-3.40]	Illumina [9389922] (imputed)	N
1393	chrX	105975498	105975499	rs66491909	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	Xq22.3	RNF128	rs66491909-?		6E-20		2.1411645	[1.85-2.50]	Illumina [9389922] (imputed)	N
1393	chrX	106015337	106015338	rs6622111	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	Xq22.3	RNF128	rs6622111-?		3E-6		1.706681	[1.38-2.11]	Illumina [9389922] (imputed)	N
1393	chrX	106016267	106016268	rs56121637	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	Xq22.3		rs56121637-T	NR	2E-95		0.1699	[0.15-0.19] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
1393	chrX	106016267	106016268	rs56121637	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	Xq22.3	RNF128	rs56121637-T	0.0127	2E-20		9.266	NR z score decrease	Illumina [26237160] (imputed)	N
1393	chrX	106016267	106016268	rs56121637	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Creatinine levels	69,591 European ancestry individuals	NA	Xq22.3	RNF128	rs56121637-T	0.015023	8E-20		0.188414	[0.15-0.23] unit increase	Illumina [24961484] (imputed)	N
1394	chrX	106048067	106048068	rs140267713	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	Xq22.3	NR	rs140267713-?	NR	2E-6	(Native Hawaiian)	0.8404	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1394	chrX	106053528	106053529	rs5916768	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (hospitalized covid vs population)	613 European ancestry cases, 680,416 European ancestry controls, 140 Hispanic or Latin American cases, 94,327 Hispanic or Latin American controls, 49 Black or African American cases, 22,410 Black or African American controls	NA	Xq22.3		rs5916768-?	NR	2E-6		0.414551	[0.24-0.59] unit increase	Illumina [9875426] (imputed)	N
1394	chrX	106059912	106059913	rs76047242	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	Xq22.3	TBC1D8B, MORC4	rs76047242-?		1E-6		2.172843	[1.61-2.90]	Illumina [9389922] (imputed)	N
1394	chrX	106072526	106072527	rs62605968	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	Xq22.3	TBC1D8B, MORC4	rs62605968-?		1E-12		1.7051136	[1.48-1.96]	Illumina [9389922] (imputed)	N
1394	chrX	106077516	106077517	rs34689332	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	Xq22.3	TBC1D8B, MORC4	rs34689332-?		4E-13		2.313175	[1.85-2.90]	Illumina [9389922] (imputed)	N
1394	chrX	106136909	106136910	rs5962770	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	Xq22.3	MORC4	rs5962770-?		2E-7		1.5148686	[1.31-1.76]	Illumina [9389922] (imputed)	N
1394	chrX	106144528	106144529	rs7057398	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	Xq22.3	MORC4, RIPPLY1, CLDN2	rs7057398-?		2E-29		2.281145	[2.00-2.60]	Illumina [9389922] (imputed)	N
1394	chrX	106160701	106160702	rs12008279	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	Xq22.3	MORC4, CLDN2	rs12008279-?		6E-15		1.7078514	[1.52-1.90]	Illumina [9389922] (imputed)	N
1395	chrX	106183669	106183670	rs12014762	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	Xq22.3	MORC4	rs12014762-?		2E-19		2.2197094	[1.89-2.60]	Illumina [9389922] (imputed)	N
1395	chrX	106200201	106200202	rs6622126	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	Xq22.3	MORC4	rs6622126-?		8E-16		1.7390733	[1.54-2.00]	Illumina [9389922] (imputed)	N
1395	chrX	106207623	106207624	rs141052845	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	Xq22.3	MORC4	rs141052845-?		2E-12		2.9180622	[2.22-3.80]	Illumina [9389922] (imputed)	N
1395	chrX	106226442	106226443	rs11092578	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	Xq22.3	MORC4	rs11092578-?		1E-6		1.512408	[1.29-1.77]	Illumina [9389922] (imputed)	N
1395	chrX	106244766	106244767	rs12688220	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	Xq22.3		rs12688220-T	0.334274029	1E-9		0.047497783	[0.032-0.063] unit decrease	Illumina [13429769] (imputed)	N
1395	chrX	106244766	106244767	rs12688220	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	Xq22.3		rs12688220-T	NR	2E-9		0.0327	[0.022-0.043] unit decrease	Affymetrix, Illumina [25845091] (imputed)	N
1395	chrX	106244766	106244767	rs12688220	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic pancreatitis	1,424 European ancestry cases, 476,104 European ancestry controls, 457 East Asian ancestry cases, 177,471 East Asian ancestry controls	NA	Xq22.3		rs12688220-T	NR	1E-16		0.2416	[0.18-0.3] unit increase	Affymetrix, Illumina [25843262] (imputed)	N
1395	chrX	106244766	106244767	rs12688220	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cholelithiasis	26,122 European ancestry cases, 461,431 European ancestry controls, 9,305 East Asian ancestry cases, 168,253 East Asian ancestry controls	NA	Xq22.3		rs12688220-T	NR	2E-11		0.0519	[0.037-0.067] unit decrease	Affymetrix, Illumina [25844936] (imputed)	N
1395	chrX	106244766	106244767	rs12688220	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Acute pancreatitis	3,798 European ancestry cases, 476,104 European ancestry controls, 827 East Asian ancestry cases, 177,471 East Asian ancestry controls	NA	Xq22.3		rs12688220-T	NR	1E-10		0.1226	[0.085-0.16] unit increase	Affymetrix, Illumina [25843473] (imputed)	N
1395	chrX	106244766	106244767	rs12688220	23143602	Whitcomb DC	2012-11-11	Nat Genet	Common genetic variants in the CLDN2 and PRSS1-PRSS2 loci alter risk for alcohol-related and sporadic pancreatitis.	Pancreatitis	676 European ancestry cases, 4,507 European ancestry controls	910 European ancestry cases, 4,170 European ancestry controls	Xq22.3	CLDN2, MORC4, RIPPLY1, TBC1D8B	rs12688220-T	0.261	2E-22		1.385	[1.28-1.49]	Illumina [625739]	N
1395	chrX	106255189	106255190	rs1927309	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	Xq22.3	Intergenic	rs1927309-?		5E-6		1.6174753	[1.33-1.96]	Illumina [9389922] (imputed)	N
1395	chrX	106286455	106286456	rs1298993	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	Xq22.3	Intergenic	rs1298993-?		3E-7		1.595169	[1.35-1.89]	Illumina [9389922] (imputed)	N
1396	chrX	106367101	106367102	rs1285582	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	Xq22.3	NUP62CL	rs1285582-?		2E-17		1.918779	[1.66-2.21]	Illumina [9389922] (imputed)	N
1396	chrX	106374857	106374858	rs12688091	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	Xq22.3	NUP62CL, RP13-383K5.4	rs12688091-?		1E-32		2.570683	[2.22-2.90]	Illumina [9389922] (imputed)	N
1396	chrX	106401328	106401329	rs1285594	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	Xq22.3	NUP62CL	rs1285594-?		1E-8		1.8754969	[1.54-2.30]	Illumina [9389922] (imputed)	N
1396	chrX	106417301	106417302	rs112460630	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	Xq22.3	NUP62CL	rs112460630-?		7E-6		1.9435148	[1.48-2.56]	Illumina [9389922] (imputed)	N
1397	chrX	106435415	106435416	rs151100624	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (hospitalized covid vs population)	613 European ancestry cases, 680,416 European ancestry controls, 140 Hispanic or Latin American cases, 94,327 Hispanic or Latin American controls, 49 Black or African American cases, 22,410 Black or African American controls	NA	Xq22.3		rs151100624-?	NR	1E-6		0.4327367	[0.26-0.61] unit decrease	Illumina [9875426] (imputed)	N
1397	chrX	106453246	106453247	rs75475662	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	Xq22.3	PIH1D3	rs75475662-?		9E-6		2.5665662	[1.72-3.80]	Illumina [9389922] (imputed)	N
1397	chrX	106473890	106473891	rs12847061	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	Xq22.3	PIH1D3	rs12847061-?		4E-14		2.7257426	[2.13-3.40]	Illumina [9389922] (imputed)	N
1397	chrX	106524514	106524515	rs12857658	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	Xq22.3	Intergenic	rs12857658-?		6E-10		2.5855854	[1.96-3.40]	Illumina [9389922] (imputed)	N
1397	chrX	106532392	106532393	rs6622208	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	Xq22.3	Intergenic	rs6622208-?		2E-8		1.8020377	[1.49-2.18]	Illumina [9389922] (imputed)	N
1397	chrX	106537751	106537752	rs73249839	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	Xq22.3	Intergenic	rs73249839-?		6E-6		2.4513547	[1.69-3.60]	Illumina [9389922] (imputed)	N
1397	chrX	106539528	106539529	rs113340515	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	Xq22.3	Intergenic	rs113340515-?		3E-6		2.121975	[1.57-2.86]	Illumina [9389922] (imputed)	N
1397	chrX	106539607	106539608	rs5917046	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	Xq22.3	Intergenic	rs5917046-?		3E-6		2.0217996	[1.53-2.67]	Illumina [9389922] (imputed)	N
1397	chrX	106561434	106561435	rs148771016	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	Xq22.3	Intergenic	rs148771016-?		4E-11		2.8437448	[2.13-3.80]	Illumina [9389922] (imputed)	N
1398	chrX	106613347	106613348	rs4826965	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	Xq22.3	Intergenic	rs4826965-?		2E-7		1.6855829	[1.40-2.03]	Illumina [9389922] (imputed)	N
1398	chrX	106677880	106677881	rs2179628	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	Xq22.3	Intergenic	rs2179628-?		1E-7		2.4949129	[1.82-3.40]	Illumina [9389922] (imputed)	N
1399	chrX	106714575	106714575	rs57801596	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (hospitalized covid vs population)	613 European ancestry cases, 680,416 European ancestry controls	NA	Xq22.3		rs57801596-?	NR	2E-6		0.589	[0.484-0.717]	Illumina [21433846] (imputed)	N
1399	chrX	106714575	106714575	rs57801596	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid respiratory support vs population)	495 European ancestry cases, 680,440 European ancestry controls, 102 Hispanic or Latin American cases, 94,330 Hispanic or Latin American controls, 39 Black or African American cases, 22,410 Black or African American controls	NA	Xq22.3		rs57801596-?	NR	2E-6		0.5201043	[0.31-0.73] unit decrease	Illumina [9842460] (imputed)	N
1399	chrX	106812187	106812188	rs16985240	29594489	Apewokin S	2018-03-28	Support Care Cancer	Host genetic susceptibility to Clostridium difficile infections in patients undergoing autologous stem cell transplantation: a genome-wide association study.	Clostridium difficile infection in multiple myeloma	57 European ancestry cases, 589 European ancestry controls	NA	Xq22.3	NR	rs16985240-?		5E-6				Illumina [892589]	N
1404	chrX	107413929	107413930	rs2295912	25387706	Vaidyanathan U	2014-12-01	Psychophysiology	Heritability and molecular genetic basis of electrodermal activity: a genome-wide association study.	Electrodermal activity	Up to 4,424 European ancestry twins and their parents	NA	Xq22.3	COL4A6	rs2295912-?	NR	2E-6	(SCR Amplitude)	0.058	[0.034-0.082] unit increase	Illumina [527829]	N
1405	chrX	107488871	107488872	rs6616678	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	Xq22.3		rs6616678-T	0.724448	5E-9		0.0107002	[0.0071-0.0143] unit decrease	Illumina [13479295] (imputed)	N
1406	chrX	107697411	107697412	rs17254489	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	Xq22.3		rs17254489-?	NR	9E-6		0.888544	[0.84-0.94]	NR [685523]	N
1409	chrX	108088147	108088148	rs28781411	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	Xq22.3		rs28781411-C	NR	2E-23		0.0129	[0.01-0.015] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1410	chrX	108227257	108227258	rs148535771	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	Xq22.3		rs148535771-?	NR	1E-6		0.878335	[0.83-0.93]	NR [685523]	N
1410	chrX	108259820	108259821	rs771182191	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	Xq22.3		rs771182191-G	NR	2E-14		0.091	[0.068-0.114] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
1411	chrX	108313685	108313686	rs12853102	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	Xq22.3		rs12853102-T	NR	1E-8		0.0126	[0.0083-0.0169] unit decrease	Affymetrix, Illumina [20529698] (imputed)	N
1411	chrX	108374416	108374417	rs11797626	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 15)	19,670 European ancestry individuals	NA	Xq22.3		rs11797626-?	NR	4E-12				NR [9705931] (imputed)	N
1413	chrX	108540061	108540062	rs1205531	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gastric ulcer	6,293 European ancestry cases, 467,985 European ancestry controls, 12,650 East Asian ancestry cases, 161,227 East Asian ancestry controls	NA	Xq22.3		rs1205531-T	NR	1E-9		0.0593	[0.04-0.078] unit increase	Affymetrix, Illumina [25842546] (imputed)	N
1413	chrX	108540061	108540062	rs1205531	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gastric ulcer	12,650 East Asian ancestry cases, 161,227 East Asian ancestry controls	NA	Xq22.3		rs1205531-T	0.366614724	2E-10		0.068151034	[0.047-0.089] unit increase	Illumina [13429311] (imputed)	N
1413	chrX	108542013	108542014	rs1205528	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gastric cancer	7,921 East Asian ancestry cases, 159,201 East Asian ancestry controls	NA	Xq22.3		rs1205528-C	0.405031967	8E-12		0.08890821	[0.063-0.114] unit decrease	Illumina [13428249] (imputed)	N
1413	chrX	108542013	108542014	rs1205528	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Gastric cancer	6,563 Japanese ancestry cases, 195,745 Japanese ancestry controls	NA	Xq22.3		rs1205528-C	NR	3E-10		0.91564685	[0.890920765149198-0.94105922271986]	Illumina [8919992] (imputed)	N
1413	chrX	108542808	108542809	rs1205527	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gastric cancer	1,029 European ancestry cases, 475,087 European ancestry controls, 7,921 East Asian ancestry cases, 159,201 East Asian ancestry controls	NA	Xq22.3		rs1205527-C	NR	9E-14		0.0942	[0.07-0.119] unit decrease	Affymetrix, Illumina [25843697] (imputed)	N
1413	chrX	108593971	108593972	rs12833418	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	Xq22.3		rs12833418-?	NR	1E-6		0.882413	[0.83-0.93]	NR [685523]	N
1414	chrX	108664064	108664065	rs150694572	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (hospitalized covid vs population)	613 European ancestry cases, 680,416 European ancestry controls, 140 Hispanic or Latin American cases, 94,327 Hispanic or Latin American controls, 49 Black or African American cases, 22,410 Black or African American controls	NA	Xq23		rs150694572-?	NR	1E-6		0.694812	[0.42-0.97] unit decrease	Illumina [9875426] (imputed)	N
1416	chrX	108934364	108934365	rs190431955	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	Xq23	ACSL4	rs190431955-A	0.00903299999999996	2E-10		0.066831924	[0.046-0.087] unit decrease	Affymetrix [93095623] (imputed)	N
1418	chrX	109259677	109259678	rs5942618	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	Xq23	NR	rs5942618-?	NR	3E-18				Affymetrix [NR]	N
1419	chrX	109345237	109345238	rs12559349	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	Xq23	NR	rs12559349-?	NR	1E-6		0.2852	[0.17-0.4] unit increase	Illumina [at least 560000] (imputed)	N
1419	chrX	109431873	109431874	rs183198850	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Yeast infection	52,218 European ancestry cases, 10,235 European ancestry controls	NA	Xq23	NR	rs183198850-?	NR	6E-6		0.2717	[0.15-0.39] unit increase	Illumina [at least 560000] (imputed)	N
1421	chrX	109693273	109693274	rs67648651	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	Xq23		rs67648651-C	NR	3E-25		0.0202	[0.016-0.024] unit decrease	Affymetrix, Illumina [20521447] (imputed)	N
1421	chrX	109693273	109693274	rs67648651	33893285	Guindo-Martinez M	2021-04-23	Nat Commun	The impact of non-additive genetic associations on age-related complex diseases.	Dyslipidemia	30,244 European ancestry cases, 26,393 European ancestry controls	NA	Xq23		rs67648651-C	0.42	1E-10		0.83		Affymetrix [15679186] (imputed)	N
1421	chrX	109697442	109697443	rs41306249	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	Xq23	NR	rs41306249-T	0.953136	7E-9		0.0221593	[0.014-0.03] unit increase	Affymetrix [16583148] (imputed)	N
1421	chrX	109697442	109697443	rs41306249	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	Xq23	NR	rs41306249-T	0.954089	2E-16		0.0417541	[0.032-0.052] unit increase	Affymetrix [16577424] (imputed)	N
1421	chrX	109703960	109703961	rs5985471	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	Xq23	NR	rs5985471-C	NR	6E-32		0.04	unit increase	Affymetrix [at least 7091467] (imputed)	N
1421	chrX	109703960	109703961	rs5985471	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	Xq23	NR	rs5985471-C	0.719	9E-7	(Hispanic)	0.064	unit increase	Affymetrix [at least 7091467] (imputed)	N
1421	chrX	109703960	109703961	rs5985471	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	Xq23	NR	rs5985471-C	0.592	7E-26	(EA)	0.038	unit increase	Affymetrix [at least 7091467] (imputed)	N
1421	chrX	109703960	109703961	rs5985471	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	Xq23	NR	rs5985471-C	NR	2E-28		0.041	unit increase	Affymetrix [at least 7091467] (imputed)	N
1421	chrX	109703960	109703961	rs5985471	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	Xq23	NR	rs5985471-C	0.592	2E-25	(EA)	0.041	unit increase	Affymetrix [at least 7091467] (imputed)	N
1421	chrX	109703960	109703961	rs5985471	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	Xq23	NR	rs5985471-C	NR	9E-22		0.037	unit increase	Affymetrix [at least 7091467] (imputed)	N
1421	chrX	109703960	109703961	rs5985471	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	Xq23	NR	rs5985471-C	0.592	4E-20	(EA)	0.037	unit increase	Affymetrix [at least 7091467] (imputed)	N
1421	chrX	109703960	109703961	rs5985471	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	Xq23	NR	rs5985471-C	NR	1E-6		0.015	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1421	chrX	109707202	109707203	rs12841198	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	Xq23		rs12841198-C	NR	1E-14		0.0161	[0.012-0.02] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
1422	chrX	109716406	109716407	rs5942937	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	Xq23	NR	rs5942937-T	NR	7E-33		0.041	unit increase	Affymetrix [at least 7091467] (imputed)	N
1422	chrX	109716406	109716407	rs5942937	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	Xq23	NR	rs5942937-T	0.597	1E-26	(EA)	0.039	unit increase	Affymetrix [at least 7091467] (imputed)	N
1422	chrX	109716406	109716407	rs5942937	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	Xq23	NR	rs5942937-T	NR	8E-30		0.043	unit increase	Affymetrix [at least 7091467] (imputed)	N
1422	chrX	109716406	109716407	rs5942937	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	Xq23	NR	rs5942937-T	0.597	1E-26	(EA)	0.043	unit increase	Affymetrix [at least 7091467] (imputed)	N
1422	chrX	109716406	109716407	rs5942937	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	Xq23	NR	rs5942937-T	NR	9E-23		0.038	unit increase	Affymetrix [at least 7091467] (imputed)	N
1422	chrX	109716406	109716407	rs5942937	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	Xq23	NR	rs5942937-T	0.597	8E-21	(EA)	0.039	unit increase	Affymetrix [at least 7091467] (imputed)	N
1422	chrX	109716406	109716407	rs5942937	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	Xq23	NR	rs5942937-T	NR	5E-7		0.016	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1422	chrX	109730476	109730477	rs12847546	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	Xq23		rs12847546-A	0.384559	3E-17		0.015973356	[0.012-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1422	chrX	109736205	109736206	rs182375344	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	Xq23	NR	rs182375344-T	0.634915	6E-10		0.0168586	[0.011-0.022] unit increase	Affymetrix [16585745] (imputed)	N
1422	chrX	109757980	109757981	rs5942951	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	Xq23		rs5942951-A	NR	2E-36		0.0244	[0.021-0.028] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
1422	chrX	109762652	109762653	rs12395955	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	Xq23	TDGF1P3	rs12395955-A	0.393889	3E-28		0.021000454	[0.017-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1422	chrX	109762856	109762856	rs543480770	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	Xq23		rs543480770-CTT	NR	1E-10		0.0112	[0.0079-0.0145] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
1422	chrX	109763752	109763753	rs5942956	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	Xq23	NR	rs5942956-G	0.605477	2E-102		0.0351754	[0.032-0.038] unit increase	Affymetrix [15000001]	N
1422	chrX	109783257	109783258	rs7060165	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CHRDL1	5,368 Icelandic ancestry individuals	NA	Xq23		rs7060165-T	0.4089	2E-28		0.153062	[0.13-0.18] unit decrease	Illumina [7506463] (imputed)	N
1422	chrX	109786109	109786110	rs12013156	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	16,677 European ancestry cases, 199,580 European ancestry controls	7,286 European ancestry cases, 107,362 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	Xq23	TDGF1P3, CHRDL1	rs12013156-A	NR	4E-7		0.927929	[0.9-0.96]	Affymetrix, Illumina [14822926] (imputed)	N
1422	chrX	109786118	109786119	rs12012896	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	Xq23	NR	rs12012896-A	0.39332500000000004	9E-115		0.027433	[0.025-0.03] unit increase	Affymetrix [16585854] (imputed)	N
1422	chrX	109786118	109786119	rs12012896	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	Xq23	NR	rs12012896-A	0.39332500000000004	2E-71		0.0253771	[0.023-0.028] unit increase	Affymetrix [16585866] (imputed)	N
1422	chrX	109792099	109792100	rs12400785	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	Xq23	NR	rs12400785-T	0.403696	3E-14		0.014438445	[0.011-0.018] unit decrease	Affymetrix [93095623] (imputed)	N
1422	chrX	109792099	109792100	rs12400785	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	Xq23	NR	rs12400785-T	0.403706	3E-20		0.017479338	[0.014-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1422	chrX	109792099	109792100	rs12400785	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	Xq23		rs12400785-T	0.403703	6E-15		0.014749744	[0.011-0.018] unit decrease	Affymetrix [93095623] (imputed)	N
1422	chrX	109792099	109792100	rs12400785	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	Xq23		rs12400785-T	0.403711	9E-20		0.01718476	[0.013-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1422	chrX	109800344	109800345	rs5942965	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	Xq23		rs5942965-A	NR	2E-10		0.0121	[0.0084-0.0158] unit decrease	Affymetrix, Illumina [20535842] (imputed)	N
1422	chrX	109800344	109800345	rs5942965	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	Xq23		rs5942965-A	0.400302	8E-19		0.016904552	[0.013-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1422	chrX	109820067	109820068	rs1573036	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	Xq23	NR	rs1573036-T	0.38910599999999995	3E-136		0.0269658	[0.025-0.029] unit increase	Affymetrix [16578495] (imputed)	N
1422	chrX	109820067	109820068	rs1573036	22829776	Coviello AD	2012-07-19	PLoS Genet	A genome-wide association meta-analysis of circulating sex hormone-binding globulin reveals multiple Loci implicated in sex steroid hormone regulation.	Sex hormone-binding globulin levels	21,791 European ancestry individuals	8,175 European ancestry individuals	Xq23	TDGF3	rs1573036-T	0.031	4E-14	(Men + Women)	0.028	[0.021-0.035] umol/L increase	Affymetrix, Illumina [2543887] (imputed)	N
1422	chrX	109820067	109820068	rs1573036	22829776	Coviello AD	2012-07-19	PLoS Genet	A genome-wide association meta-analysis of circulating sex hormone-binding globulin reveals multiple Loci implicated in sex steroid hormone regulation.	Sex hormone-binding globulin levels	21,791 European ancestry individuals	8,175 European ancestry individuals	Xq23	TDGF3	rs1573036-T	0.031	3E-16	(Men)	0.035	[0.027-0.043] umol/L increase	Affymetrix, Illumina [2543887] (imputed)	N
1422	chrX	109820219	109820220	rs881090	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	Xq23	NR	rs881090-T	0.39075800000000005	6E-188		0.0628302	[0.059-0.067] unit increase	Affymetrix [16577313] (imputed)	N
1422	chrX	109823281	109823282	rs12832585	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	Xq23		rs12832585-G	NR	8E-26		0.0214	[0.017-0.025] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
1422	chrX	109833138	109833139	rs1418334	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	Xq23	NR	rs1418334-G	0.389428	1E-637		0.0366866	[0.035-0.038] unit increase	Affymetrix [16582909] (imputed)	N
1422	chrX	109833138	109833139	rs1418334	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	Xq23	NR	rs1418334-G	0.390263	2E-604		0.0419059	[0.04-0.044] unit increase	Affymetrix [16582621] (imputed)	N
1422	chrX	109833138	109833139	rs1418334	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	Xq23	NR	rs1418334-G	0.389428	1E-439		0.0344232	[0.033-0.036] unit increase	Affymetrix [16582965] (imputed)	N
1422	chrX	109833138	109833139	rs1418334	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	Xq23	NR	rs1418334-G	0.390263	3E-474		0.0399014	[0.038-0.042] unit increase	Affymetrix [16582614] (imputed)	N
1422	chrX	109833419	109833420	rs1418333	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	Xq23		rs1418333-A	0.387067	1E-11		0.012829925	[0.0091-0.0165] unit increase	Affymetrix [93095623] (imputed)	N
1422	chrX	109833686	109833688	rs57939150	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	Xq23		rs57939150-A	NR	2E-12		0.0137	[0.01-0.0174] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
1422	chrX	109833904	109833905	rs5942977	34337532	Fantus RJ	2021-05-25	Eur Urol Open Sci	Genetic Susceptibility for Low Testosterone in Men and Its Implications in Biology and Screening: Data from the UK Biobank.	Low testosterone levels	13,409 European ancestry male cases, 98,267 European ancestry male controls	4,426 European ancestry male cases, 32,800 European ancestry male controls	Xq23	NR	rs5942977-G	0.6	2E-61		1.33	NR	NR [8853336] (imputed)	N
1422	chrX	109833904	109833905	rs5942977	33888516	Zheng T	2021-04-22	Gut	Genome-wide analysis of 944 133 individuals provides insights into the etiology of haemorrhoidal disease.	Haemorrhoidal disease	218,920 European ancestry cases, 725,213 European ancestry controls	NA	Xq23	CHRDL1	rs5942977-?	0.4023	7E-10		0.98	[0.97-0.99]	Affymetrix, Illumina [8494288] (imputed)	N
1423	chrX	109852771	109852772	rs372038686	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	Xq23		rs372038686-C	NR	1E-13		0.0144	[0.011-0.018] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1423	chrX	109883764	109883765	rs7884765	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	Xq23	NR	rs7884765-T	0.3932	2E-17		0.0239339	[0.018-0.03] unit increase	Affymetrix [16580851] (imputed)	N
1423	chrX	109887298	109887299	rs142351272	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	Xq23		rs142351272-C	0.396067	1E-14		0.014500072	[0.011-0.018] unit decrease	Affymetrix [93095623] (imputed)	N
1423	chrX	109887298	109887299	rs142351272	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	Xq23		rs142351272-C	0.396062	2E-13		0.013788061	[0.01-0.017] unit decrease	Affymetrix [93095623] (imputed)	N
1423	chrX	109888230	109888230	rs200991074	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	Xq23		rs200991074-GCCT	NR	4E-13		0.0125	[0.0092-0.0158] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1423	chrX	109888389	109888390	rs7882858	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	Xq23	NR	rs7882858-A	0.340803	4E-12		0.014421936	[0.01-0.018] unit decrease	Affymetrix [93095623] (imputed)	N
1423	chrX	109888389	109888390	rs7882858	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	Xq23		rs7882858-A	0.340822	7E-16		0.017082438	[0.013-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1423	chrX	109888389	109888390	rs7882858	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	Xq23		rs7882858-A	0.340822	2E-15		0.016807532	[0.013-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1423	chrX	109888389	109888390	rs7882858	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	Xq23		rs7882858-A	0.340832	2E-13		0.015268986	[0.011-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
1423	chrX	109902011	109902012	rs12007422	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting insulin	16,386 Hispanic individuals	NA	Xq23	CHRDL1	rs12007422-T	0.7092	1E-5		0.0318	[0.018-0.045] unit increase	Affymetrix, Illumina [26195808] (imputed)	N
1423	chrX	109902011	109902012	rs12007422	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting insulin	151,013 European ancestry individuals	NA	Xq23	CHRDL1	rs12007422-T	0.6195	1E-6		0.011	[0.0067-0.0153] unit increase	Affymetrix, Illumina [32635793] (imputed)	N
1423	chrX	109906102	109906103	rs144832584	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	Xq23	NR	rs144832584-C	0.966073	2E-8		0.0259675	[0.017-0.035] unit decrease	Affymetrix [15000001]	N
1423	chrX	109933230	109933231	rs56692788	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	Xq23		rs56692788-A	NR	5E-14		0.0153	[0.011-0.019] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1423	chrX	109935845	109935846	rs5943055	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	Xq23		rs5943055-A	NR	1E-23		0.0196	[0.016-0.023] unit decrease	Affymetrix, Illumina [20536134] (imputed)	N
1423	chrX	109939204	109939205	rs5943057	21378988	Coronary Artery Disease (C4D) Genetics Consortium	2011-03-06	Nat Genet	A genome-wide association study in Europeans and South Asians identifies five new loci for coronary artery disease.	Coronary heart disease	8,424 European ancestry cases, 7,268 European ancestry controls, 6,996 South Asian ancestry cases, 7,794 South Asian ancestry controls	18,049 European ancestry cases, 16,357 European ancestry controls, 3,359 South Asian ancestry cases, 2,828 South Asian ancestry controls	Xq23	intergenic	rs5943057-?	NR	9E-7				Illumina [574919]	N
1427	chrX	110458157	110458158	rs16986436	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	Xq23		rs16986436-A	NR	3E-9		0.022	[0.015-0.029] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1429	chrX	110688687	110688688	rs7885722	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mumps	31,227 European ancestry cases, 54,153 European ancestry controls	NA	Xq23	NR	rs7885722-?	NR	7E-6		0.3601	[0.2-0.52] unit decrease	Illumina [at least 560000] (imputed)	N
1430	chrX	110837793	110837794	rs185496698	33482370	Kim SK	2021-01-19	J Shoulder Elbow Surg	A Genome Wide Association Study For Shoulder Impingement and Rotator Cuff Disease.	Shoulder impingement or rotator cuff tear	3,864 European ancestry shoulder impingement cases, 5,701 European ancestry rotator cuff tear cases, up to 614,568 European ancestry controls	NA	Xq23	LINC00890, ALG13	rs185496698-T	0.0175	3E-9		3.4056	NR	Affymetrix [up to 17556449] (imputed)	N
1431	chrX	110887830	110887831	rs73266310	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	Xq23	NR	rs73266310-G	0.90025	5E-17		0.0100601	[0.0075-0.0126] unit increase	Affymetrix [16582909] (imputed)	N
1431	chrX	110887830	110887831	rs73266310	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	Xq23	NR	rs73266310-G	0.90025	3E-11		0.00935306	[0.0065-0.0122] unit increase	Affymetrix [16582965] (imputed)	N
1431	chrX	110954638	110954639	rs16986609	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	Xq23	NR	rs16986609-?	NR	7E-6				Affymetrix [NR]	N
1431	chrX	111003226	111003227	rs201820102	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	Xq23	ALG13	rs201820102-C	NR	2E-6		1.75434	[1.03-2.48] unit increase	Illumina [at least 950000] (imputed)	N
1432	chrX	111072832	111072833	rs73266316	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	Xq23	NR	rs73266316-T	0.07201199999999996	2E-14		0.0131623	[0.0096-0.0167] unit increase	Affymetrix [16582621] (imputed)	N
1432	chrX	111072832	111072833	rs73266316	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	Xq23	NR	rs73266316-T	0.07201199999999996	8E-12		0.0125942	[0.0088-0.0164] unit increase	Affymetrix [16582614] (imputed)	N
1433	chrX	111155232	111155233	rs7050529	19247474	Caporaso N	2009-02-27	PLoS One	Genome-wide and candidate gene association study of cigarette smoking behaviors.	Smoking behavior	2,617 European ancestry smokers, 1,725 European ancestry controls	NA	Xq23	TRPC5	rs7050529-?	0.07	6E-6	(CPD)	0.06	[NR] cigarettes per day decrease	Illumina [~ 518000]	N
1433	chrX	111274131	111274132	rs5942765	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	Xq23		rs5942765-?	NR	3E-6		1.11486	[1.07-1.16]	NR [685523]	N
1436	chrX	111646463	111646464	rs5982533	19260141	Zemunik T	2009-02-01	Croat Med J	Genome-wide association study of biochemical traits in Korcula Island, Croatia.	Biochemical measures	898 Korculan (founder/genetic isolate) individuals	NA	Xq23	ZCCHC16	rs5982533-G	0.22	7E-6	(triglycerides)	0.23	[0.13-0.33] mmol/L decrease	Illumina [316730]	N
1438	chrX	111914243	111914244	rs7064462	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Time-dependent creatinine clearance change response to tenofovir treatment in HIV infection (time and treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	Xq23	NR	rs7064462-?		5E-6	(Hispanic)			Illumina [~ 5140000] (imputed)	N
1440	chrX	112144626	112144627	rs4829460	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	Xq23		rs4829460-T	NR	1E-18		0.0134	[0.01-0.016] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
1440	chrX	112157347	112157347	rs35062406	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	Xq23	RP1-218B13.1	rs35062406-CT	0.218536	3E-14		0.017081926	[0.013-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1440	chrX	112157347	112157347	rs35062406	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	Xq23	RP1-218B13.1	rs35062406-CT	0.218517	4E-14		0.016991133	[0.013-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1440	chrX	112159517	112159518	rs5974317	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	Xq23		rs5974317-A	NR	9E-19		0.0135	[0.011-0.016] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
1440	chrX	112162309	112162310	rs4829517	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	Xq23		rs4829517-G	NR	6E-14		0.0117	[0.0086-0.0148] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
1446	chrX	112877566	112877567	rs5929166	28067912	Lee JC	2017-01-09	Nat Genet	Genome-wide association study identifies distinct genetic contributions to prognosis and susceptibility in Crohn's disease.	Poor prognosis in Crohn's disease	1,762 Northern European ancestry poor prognosis cases, 972 Northern European ancestry good prognosis controls.		Xq23	XACT	rs5929166-A	0.03	5E-9		3.03	[2.08-4.35]	Affymetrix, Illumina [at least 7000000] (imputed)	N
1447	chrX	113108694	113108695	rs5974155	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	Xq23	NR	rs5974155-?	NR	6E-12				Affymetrix [NR]	N
1448	chrX	113230595	113230596	rs140597432	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein B4GALT3	5,358 Icelandic ancestry individuals	NA	Xq23		rs140597432-G	0.0175	2E-13		0.0936587	[0.069-0.119] unit increase	Illumina [7506463] (imputed)	N
1459	chrX	114576973	114576974	rs73578101	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	Xq23		rs73578101-A	0.058667	5E-15		0.031205935	[0.023-0.039] unit decrease	Affymetrix [93095623] (imputed)	N
1459	chrX	114607716	114607717	rs10521695	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Time-dependent creatinine clearance change response to tenofovir treatment in HIV infection (time and treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	Xq23	NR	rs10521695-?		8E-6	(African)			Illumina [~ 5140000] (imputed)	N
1459	chrX	114638960	114638961	rs183218863	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	Xq23		rs183218863-G	0.05514	4E-10		0.026471425	[0.018-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
1459	chrX	114665176	114665177	rs11167418	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 2)	4,680 European ancestry individuals	3,566 European ancestry individuals	Xq23		rs11167418-C	0.46056821	4E-8				Illumina [7417619] (imputed)	N
1460	chrX	114791615	114791616	rs543181042	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	Xq23		rs543181042-C	NR	2E-10		0.0123	[0.0086-0.016] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1460	chrX	114810878	114810879	rs2522184	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	Xq23	PLS3	rs2522184-A	0.441967	4E-11		0.012509678	[0.0088-0.0162] unit increase	Affymetrix [93095623] (imputed)	N
1460	chrX	114810878	114810879	rs2522184	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	Xq23	PLS3	rs2522184-A	0.441956	2E-20		0.017502008	[0.014-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1461	chrX	114822736	114822737	rs2522188	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	Xq23	PLS3	rs2522188-T	0.391794	8E-10		0.011944743	[0.0081-0.0158] unit decrease	Affymetrix [93095623] (imputed)	N
1461	chrX	114922474	114922475	rs141044160	27515689	Kerns SL	2016-07-20	EBioMedicine	Meta-analysis of Genome Wide Association Studies Identifies Genetic Markers of Late Toxicity Following Radiotherapy for Prostate Cancer.	Response to radiotherapy in prostate cancer (toxicity, rectal bleeding)	1,487 European ancestry individuals	NA	Xq23	intergenic	rs141044160-C	0.05	2E-6		2.68	[1.78-4.04]	NR [~ 38000000] (imputed)	N
1462	chrX	115014698	115014699	rs12690320	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	Xq23	NR	rs12690320-G	0.557404	3E-10		0.00520149	[0.0036-0.0068] unit increase	Affymetrix [16582621] (imputed)	N
1462	chrX	115014698	115014699	rs12690320	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	Xq23	NR	rs12690320-G	0.557404	6E-8		0.00474377	[0.003-0.0065] unit increase	Affymetrix [16582614] (imputed)	N
1463	chrX	115094455	115094456	rs142491398	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 6, height of vermillion lower lip)	2,187 European ancestry individuals	NA	Xq23	NR	rs142491398-T	0.05494	4E-6		0.268	[0.16-0.38] unit increase	Illumina [10677593] (imputed)	N
1463	chrX	115129713	115129714	rs5950491	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Inguinal hernia	16,725 European ancestry cases, 428,356 European ancestry controls, 1,664 East Asian ancestry cases, 177,062 East Asian ancestry controls	NA	Xq23		rs5950491-C	NR	1E-13		0.064	[0.047-0.081] unit decrease	Affymetrix, Illumina [25841416] (imputed)	N
1463	chrX	115132833	115132834	rs6608539	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	Xq23	AGTR2	rs6608539-A	0.46753	2E-14		0.02404	[0.018-0.03] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
1463	chrX	115164281	115164281	rs201386833	28877031	Zhang G	2017-09-07	N Engl J Med	Genetic Associations with Gestational Duration and Spontaneous Preterm Birth.	Preterm birth (maternal effect)	3,331 European ancestry preterm birth mothers, 40,236 European ancestry term birth mothers	2,565 European ancestry preterm birth mothers, 6,034 European ancestry term birth mothers	Xq23	AGTR2, PLS3	rs201386833-?	0.41	1E-11		1.15	[NR]	Illumina [15635593] (imputed)	N
1463	chrX	115164770	115164772	rs201226733	28877031	Zhang G	2017-09-07	N Engl J Med	Genetic Associations with Gestational Duration and Spontaneous Preterm Birth.	Gestational age at birth (maternal effect)	43,568 European ancestry mothers	8,643 European ancestry mothers	Xq23	AGTR2, PLS3	rs201226733-?	0.422	7E-16		0.82	[NR] unit decrease	Illumina [15635593] (imputed)	N
1464	chrX	115288473	115288474	rs1914711	30130595	Dominguez-Cruz MG	2018-08-18	Gene	Pilot genome-wide association study identifying novel risk loci for type 2 diabetes in a Maya population.	Type 2 diabetes	45 Maya ancestry cases, 47 Maya ancestry controls	NA	Xq23	AGTR2	rs1914711-A	0.484	1E-9		6.824		Affymetrix [757439]	N
1464	chrX	115302191	115302192	rs1403543	21602797	Wright FA	2011-05-22	Nat Genet	Genome-wide association and linkage identify modifier loci of lung disease severity in cystic fibrosis at 11p13 and 20q13.2.	Cystic fibrosis severity	2,317 European ancestry cases, 177 cases	898 European ancestry sibling pair cases, 75 sibling pair cases	Xq23	AGTR2	rs1403543-A	0.51	2E-6				Illumina [~ 2609000] (imputed)	N
1465	chrX	115348274	115348275	rs7879546	26417704	Corvol H	2015-09-29	Nat Commun	Genome-wide association meta-analysis identifies five modifier loci of lung disease severity in cystic fibrosis.	Lung disease severity in cystic fibrosis	4,139 European and other ancestry p.Phe508del homozygote cases,  2,226 European and other ancestry cases	NA	Xq23	AGTR2, SLC6A14	rs7879546-C	0.48	5E-6	(males, fixed)			Illumina [8520458] (imputed)	N
1465	chrX	115348274	115348275	rs7879546	26417704	Corvol H	2015-09-29	Nat Commun	Genome-wide association meta-analysis identifies five modifier loci of lung disease severity in cystic fibrosis.	Lung disease severity in cystic fibrosis	4,139 European and other ancestry p.Phe508del homozygote cases,  2,226 European and other ancestry cases	NA	Xq23	AGTR2, SLC6A14	rs7879546-C	0.48	5E-10	(EA, fixed)			Illumina [8520458] (imputed)	N
1465	chrX	115348274	115348275	rs7879546	26417704	Corvol H	2015-09-29	Nat Commun	Genome-wide association meta-analysis identifies five modifier loci of lung disease severity in cystic fibrosis.	Lung disease severity in cystic fibrosis	4,139 European and other ancestry p.Phe508del homozygote cases,  2,226 European and other ancestry cases	NA	Xq23	AGTR2, SLC6A14	rs7879546-C	0.48	1E-9	(fixed)	0.07	[NR] unit increase	Illumina [8520458] (imputed)	N
1465	chrX	115386564	115386565	rs5952223	26417704	Corvol H	2015-09-29	Nat Commun	Genome-wide association meta-analysis identifies five modifier loci of lung disease severity in cystic fibrosis.	Lung disease severity in cystic fibrosis	4,139 European and other ancestry p.Phe508del homozygote cases,  2,226 European and other ancestry cases	NA	Xq23	AGTR2, SLC6A14	rs5952223-T	0.28	9E-6	(p.Phe508del, males, fixed)			Illumina [8520458] (imputed)	N
1465	chrX	115386564	115386565	rs5952223	26417704	Corvol H	2015-09-29	Nat Commun	Genome-wide association meta-analysis identifies five modifier loci of lung disease severity in cystic fibrosis.	Lung disease severity in cystic fibrosis	4,139 European and other ancestry p.Phe508del homozygote cases,  2,226 European and other ancestry cases	NA	Xq23	AGTR2, SLC6A14	rs5952223-T	0.28	5E-8	(EA, p.Phe508del, fixed)			Illumina [8520458] (imputed)	N
1465	chrX	115386564	115386565	rs5952223	26417704	Corvol H	2015-09-29	Nat Commun	Genome-wide association meta-analysis identifies five modifier loci of lung disease severity in cystic fibrosis.	Lung disease severity in cystic fibrosis	4,139 European and other ancestry p.Phe508del homozygote cases,  2,226 European and other ancestry cases	NA	Xq23	AGTR2, SLC6A14	rs5952223-T	0.28	3E-8	(p.Phe508del, fixed)	0.08	[NR] unit increase	Illumina [8520458] (imputed)	N
1465	chrX	115408810	115408811	rs146662075	29358691	Bonas-Guarch S	2018-01-22	Nat Commun	Re-analysis of public genetic data reveals a rare X-chromosomal variant associated with type 2 diabetes.	Type 2 diabetes	5,277 European ancestry cases, 15,702 European ancestry controls	9,253 European ancestry cases and controls, 3,490 Hispanic case and controls, 174,532 cases and controls	Xq23	AGTR2	rs146662075-T	NR	8E-9		1.95	[1.56-2.45]	Affymetrix, Illumina [~ 1000000] (imputed)	N
1466	chrX	115566838	115566839	rs3788766	30807572	Gong J	2019-02-26	PLoS Genet	Genetic association and transcriptome integration identify contributing genes and tissues at cystic fibrosis modifier loci.	Meconium ileus in cystic fibrosis	1,115 European ancestry cases, 5,655 European ancestry controls	NA	Xq23	SLC6A14	rs3788766-T	0.61	2E-16		1.44	NR	Illumina [8763019] (imputed)	N
1469	chrX	115904721	115904722	rs1506966	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 255)	19,670 European ancestry individuals	NA	Xq23		rs1506966-?	NR	5E-8				NR [9705931] (imputed)	N
1471	chrX	116222262	116222263	rs6646773	22760553	Adkins DE	2012-07-03	Transl Psychiatry	Genome-wide pharmacogenomic study of citalopram-induced side effects in STAR*D.	Response to citalopram treatment	1,392 European ancestry depression cases, 264 African American depression cases, 106 depression cases	NA	Xq23	intergenic	rs6646773-C	0.076	1E-6	(EA + AA - GSE)			Affymetrix [421789]	N
1475	chrX	116784476	116784477	rs762270946	30842574	Luciano M	2019-03-06	Mol Psychiatry	The influence of X chromosome variants on trait neuroticism.	Neuroticism	405,274 European ancestry individuals	NA	Xq24	NR	rs762270946-T	0.9989	9E-7		0.1505	[0.091-0.21] unit decrease	Illumina [1686693] (imputed)	N
1476	chrX	116869913	116869914	rs5910235	23319000	Luykx JJ	2013-01-15	Mol Psychiatry	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (5-HIAA/ MHPG Ratio)	up to 398 European ancestry individuals	NA	Xq24	intergenic	rs5910235-G		7E-6		0.2785	unit increase	Illumina [5767231] (imputed)	N
1478	chrX	117088055	117088056	rs2430212	19084217	Benyamin B	2008-12-17	Am J Hum Genet	Variants in TF and HFE explain approximately 40% of genetic variation in serum-transferrin levels.	Iron status biomarkers	459 European ancestry twin pairs	NA	Xq24	KLHL13	rs2430212-?	NR	2E-6	(serum transferrin)			Illumina [315887]	N
1481	chrX	117566639	117566640	rs142268441	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Trunk fat mass	3,399 whole genome sequenced individuals, 12,838 European ancestry individuals	10,667 European ancestry individuals	Xq24	WDR44	rs142268441-T	0.9663	5E-6		0.4126	[0.24-0.59] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1482	chrX	117621097	117621098	rs112556676	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HDLBP	5,356 Icelandic ancestry individuals	NA	Xq24		rs112556676-T	0.04411	6E-12		0.0607207	[0.043-0.078] unit increase	Illumina [7506463] (imputed)	N
1482	chrX	117633833	117633834	rs1294804	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	Xq24	NR	rs1294804-G	0.669821	3E-8		0.00387709	[0.0024-0.0053] unit increase	Affymetrix [16582909] (imputed)	N
1482	chrX	117647580	117647581	rs5910367	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	Xq24		rs5910367-A	NR	9E-16		0.013	[0.0099-0.0161] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
1483	chrX	117726301	117726302	rs1937171	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	Xq24	DOCK11	rs1937171-A	0.603351	2E-14		0.014745536	[0.011-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
1484	chrX	117835131	117835132	rs12849637	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	Xq24		rs12849637-T	0.394916235	8E-17		0.06330243	[0.048-0.078] unit increase	Illumina [13429769] (imputed)	N
1484	chrX	117860078	117860079	rs2495637	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	Xq24		rs2495637-A	NR	2E-16		1.0559335	[1.04237410513696-1.06966933500035]	Illumina [8919992] (imputed)	N
1484	chrX	117887797	117887798	rs1316982	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	Xq24	NR	rs1316982-A	NR	3E-9		0.029	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
1484	chrX	117915163	117915163	rs11390176	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	Xq24	IL13RA1	rs11390176-T	0.44	1E-14		1.06	1.04-1.07	Illumina [12557761] (imputed)	N
1484	chrX	117916369	117916370	rs3121672	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	Xq24	IL13RA1	rs3121672-C	0.568	3E-17	(Japanese)	0.024	[0.018-0.03] unit increase	Illumina [6108953] (imputed)	N
1484	chrX	117929865	117929866	rs12688607	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	Xq24		rs12688607-G	0.55425	6E-12		0.0152995	[0.011-0.02] unit decrease	Illumina [13479924] (imputed)	N
1484	chrX	117931357	117931358	rs2489879	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	Xq24		rs2489879-G	NR	9E-26		0.0168	[0.014-0.02] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1484	chrX	117931357	117931358	rs2489879	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	Xq24		rs2489879-G	NR	8E-27		0.0198	[0.016-0.023] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1484	chrX	117931357	117931358	rs2489879	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	163,835 East Asian ancestry individuals	NA	Xq24		rs2489879-G	0.428586	3E-14		0.0198937	[0.015-0.025] unit increase	Illumina [13479178] (imputed)	N
1484	chrX	117932996	117932997	rs765142292	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	Xq24		rs765142292-T	NR	4E-24		0.0572	[0.046-0.068] unit decrease	Affymetrix, Illumina [25845091] (imputed)	N
1484	chrX	117939512	117939513	rs2262324	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aortic aneurysm	3,230 European ancestry cases, 475,964 European ancestry controls, 1,155 East Asian ancestry cases, 173,601 East Asian ancestry controls	NA	Xq24		rs2262324-G	NR	2E-8		0.0995	[0.065-0.134] unit increase	Affymetrix, Illumina [25843950] (imputed)	N
1484	chrX	117941115	117941116	rs2430200	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	Xq24		rs2430200-G	NR	5E-10		0.0109	[0.0074-0.0144] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
1487	chrX	118264401	118264402	rs5957117	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	Xq24	NR	rs5957117-?	NR	6E-7	(Native Hawaiian)	0.9688	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1488	chrX	118370488	118370489	rs145582672	34216518	Osman Y	2021-07-03	Int J Lab Hematol	Functional multigenic variations associated with hodgkin lymphoma.	Hodgkin's lymphoma	56 Greater Middle Eastern ancestry cases,  5 unknown ancestry cases, 36 Greater Middle Eastern ancestry controls	NA	Xq24	PGRMC1	rs145582672-A	0.479	9E-12		0.026		Illumina [243345]	N
1489	chrX	118567701	118567702	rs5910578	21623375	Albagha OM	2011-05-29	Nat Genet	Genome-wide association identifies three new susceptibility loci for Paget's disease of bone.	Paget's disease	741 European ancestry cases, 2,699 European ancestry controls	1,474 European ancestry cases, 1,671 European ancestry controls	Xq24	SLC25A43	rs5910578-C	0.74	1E-7		1.34	[NR]	Illumina [2487078] (imputed)	N
1489	chrX	118590261	118590262	rs432528	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	Xq24		rs432528-C	NR	2E-14		0.0132	[0.0099-0.0165] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
1489	chrX	118594421	118594422	rs3848873	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	Xq24	SLC25A43, SLC25A5-AS1	rs3848873-?	NR	3E-22		0.025958868	[0.021-0.031] unit increase	Illumina [27896057] (imputed)	N
1489	chrX	118600212	118600213	rs1055285	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	Xq24		rs1055285-C	0.585195	3E-17		0.0140829	[0.011-0.017] unit increase	Illumina [13479295] (imputed)	N
1489	chrX	118601472	118601473	rs392020	35023831	Chong M	2022-01-13	Elife	GWAS and ExWAS of blood Mitochondrial DNA copy number identifies 71 loci and highlights a potential causal role in dementia.	Mitochondrial DNA copy number	395,718 British, Irish, Other White, South Asian, African ancestry individuals	NA	Xq24	NR	rs392020-C	0.811391	7E-26		0.0212	[0.017-0.025] unit decrease	Affymetrix [23037915] (imputed)	N
1489	chrX	118601472	118601473	rs392020	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	Xq24		rs392020-C	NR	6E-40		0.0152	[0.013-0.017] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1490	chrX	118621018	118621019	rs440072	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	Xq24		rs440072-A	NR	2E-11		0.0128	[0.0091-0.0165] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
1490	chrX	118621584	118621585	rs439167	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	Xq24		rs439167-A	NR	5E-13		0.0111	[0.0082-0.014] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
1490	chrX	118621876	118621877	rs376741	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	Xq24		rs376741-G	NR	5E-14		0.0152	[0.011-0.019] unit decrease	Affymetrix, Illumina [20529698] (imputed)	N
1490	chrX	118630621	118630622	rs454741	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	Xq24	SLC25A43, CXorf56	rs454741-G	0.641	5E-10		6.215	NR z score decrease	Illumina [26237160] (imputed)	N
1490	chrX	118716986	118716987	rs7879933	23471985	Jahanshad N	2013-03-05	Proc Natl Acad Sci U S A	Genome-wide scan of healthy human connectome discovers SPON1 gene variant influencing dementia severity.	Brain connectivity	331 European ancestry individuals		Xq24	UBE2A	rs7879933-?	NR	2E-10	(strength - R-inferior parietal)			Illumina [428287]	N
1491	chrX	118827316	118827317	rs17261138	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	Xq24	SEPT6	rs17261138-C	0.609638	2E-9		0.012598671	[0.0085-0.0167] unit increase	Affymetrix [93095623] (imputed)	N
1491	chrX	118832723	118832724	rs77806999	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atrial fibrillation/atrial flutter	29,212 European ancestry cases, 400,539 European ancestry controls, 4,150 East Asian ancestry cases, 155,540 East Asian ancestry controls	NA	Xq24		rs77806999-G	NR	4E-9		0.0574	[0.038-0.076] unit decrease	Affymetrix, Illumina [25830072] (imputed)	N
1491	chrX	118869589	118869590	rs5957227	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	Xq24	RPL39	rs5957227-?	NR	7E-6	(TAG 58:10)	0.50097513	[0.28-0.72] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1492	chrX	118886369	118886370	rs12852885	33119750	Vergara C	2020-10-29	J Infect Dis	A multi-ancestry sex stratified genome-wide association study of spontaneous clearance of hepatitis C virus.	Hepatitis C (spontaneous viral clearance)	239 African ancestry male cases, 1,184 African ancestry male controls, 206 African ancestry female cases, 572 African ancestry female controls, 489 European ancestry male cases, 703 European ancestry male controls, 212 European ancestry female cases, 332 European ancestry female controls, 91 Hispanic male cases, 197 Hispanic male controls, 82 Hispanic female cases, 116 Hispanic female controls	NA	Xq24	SEPT6, RPL39	rs12852885-?	NR	2E-6				Illumina [5730693] (imputed)	N
1492	chrX	118893412	118893413	rs2782225	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	Xq24	SOWAHD	rs2782225-C	0.640309	6E-9		0.011188594	[0.0074-0.015] unit decrease	Affymetrix [93095623] (imputed)	N
1492	chrX	118893412	118893413	rs2782225	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	Xq24	SOWAHD	rs2782225-C	0.640305	3E-9		0.011422086	[0.0077-0.0152] unit decrease	Affymetrix [93095623] (imputed)	N
1492	chrX	118971597	118971598	rs34350340	30898391	Lawrenson K	2019-03-19	Gynecol Oncol	Genome-wide association studies identify susceptibility loci for epithelial ovarian cancer in east Asian women.	Epithelial ovarian cancer	3,238 East Asian ancestry cases, 4,083 East Asian ancestry controls	NA	Xq24		rs34350340-?	NR	4E-6	(clearcell)	1.87		Illumina [11595112] (imputed)	N
1496	chrX	119436759	119436759	rs112188548	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	Xq24		rs112188548-CCT	NR	6E-10		0.0155	[0.011-0.02] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
1496	chrX	119436759	119436759	rs112188548	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	Xq24	TMEM255A	rs112188548-CCT	0.12619	1E-10		0.0180404	[0.013-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1496	chrX	119439334	119439335	rs5957354	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	Xq24	TMEM255A	rs5957354-A	0.129687	1E-9		0.016742807	[0.011-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1496	chrX	119448998	119448999	rs782424293	30842574	Luciano M	2019-03-06	Mol Psychiatry	The influence of X chromosome variants on trait neuroticism.	Neuroticism	405,274 European ancestry individuals	NA	Xq24	NR	rs782424293-T	0.9999	5E-6		0.6414	[0.37-0.92] unit decrease	Illumina [1686693] (imputed)	N
1496	chrX	119528503	119528504	rs5957364	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-to-hip ratio adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,049 whole genome sequenced individuals, 29,518 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,001 Mylopotamos (founder/genetic isolate) individuals, 867 Pomak (founder/genetic isolate) individuals	206,045 European ancestry individuals	Xq24	ATP1B4	rs5957364-T	0.0887	3E-6		0.2495	[0.14-0.35] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1497	chrX	119617875	119617876	rs6603626	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid vs negative)	9,913 European ancestry cases, 85,072 European ancestry controls, 2,553 Hispanic or Latin American cases, 13,086 Hispanic or Latin American controls, 506 Black or African American cases, 3,110 Black or African American controls	NA	Xq24		rs6603626-?	NR	6E-8		0.0677461	[0.043-0.092] unit increase	Illumina [9939936] (imputed)	N
1497	chrX	119629106	119629107	rs138734206	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C1GALT1C1	5,314 Icelandic ancestry individuals	NA	Xq24		rs138734206-G	0.009459	5E-144		2.26854	[2.09-2.44] unit decrease	Illumina [7506463] (imputed)	N
1498	chrX	119747172	119747173	rs142757609	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C1GALT1C1	5,314 Icelandic ancestry individuals	NA	Xq24		rs142757609-G	0.02776	9E-31		0.394623	[0.33-0.46] unit increase	Illumina [7506463] (imputed)	N
1498	chrX	119758809	119758810	rs5910940	28187132	Kiryluk K	2017-02-10	PLoS Genet	GWAS for serum galactose-deficient IgA1 implicates critical genes of the O-glycosylation pathway.	Serum galactose-deficient IgA1 levels	950 Han Chinese ancestry individuals, 245 European ancestry individuals	653 East Asian ancestry individuals, 785 European ancestry individuals	Xq24	C1GALT1C1	rs5910940-C	NR	5E-6		0.13	[0.071-0.189] unit decrease	Illumina [468781]	N
1499	chrX	119867474	119867475	rs1972809	22808956	Lyons PA	2012-07-19	N Engl J Med	Genetically distinct subsets within ANCA-associated vasculitis.	Antineutrophil cytoplasmic antibody-associated vasculitis	914 European ancestry cases, 5,259 European ancestry controls	1,454 European ancestry cases, 1,666 European ancestry controls	Xq24	intergenic	rs1972809-?	NR	1E-24		1.28	[NR]	Affymetrix [NR]	N
1499	chrX	119886741	119886742	rs5956244	25387704	Malone SM	2014-12-01	Psychophysiology	Heritability and molecular-genetic basis of resting EEG activity: a genome-wide association study.	Electroencephalogram traits	2,383 European ancestry adolescents and 1,643 European ancestry adults from 1,613 families	NA	Xq24	intergenic	rs5956244-?	NR	6E-6	(Alpha peak frequency, occipital	0.051	[0.029-0.073] unit increase	Illumina [527829]	N
1506	chrX	120747121	120747122	rs751611955	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Nephrotic syndrome	775 European ancestry cases, 475,255 European ancestry controls, 1,314 East Asian ancestry cases, 177,412 East Asian ancestry controls	NA	Xq24		rs751611955-A	NR	2E-8		19.594	[12.74-26.45] unit increase	Affymetrix, Illumina [25844401] (imputed)	N
1507	chrX	120850320	120850321	rs2429676	26312577	Tan LJ	2015-08-27	J Clin Endocrinol Metab	Bivariate Genome-Wide Association Study Implicates ATP6V1G1 as a Novel Pleiotropic Locus Underlying Osteoporosis and Age at Menarche.	Bone mineral density (hip) and age at menarche	826 Han Chinese ancestry females	1,728 European ancestry females, 709 African American females, 408 Hispanic/Latin American females	Xq24	intergenic	rs2429676-?		4E-6	(East Asian)			Affymetrix [702413]	N
1508	chrX	121028239	121028240	rs146456039	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	Xq25	RP13-192B19.2	rs146456039-T	0.9871	3E-6		0.3801	[0.22-0.54] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1509	chrX	121217111	121217112	rs2801231	26718567	Williams SR	2015-12-30	Neurology	Shared genetic susceptibility of vascular-related biomarkers with ischemic and recurrent stroke.	Fibrinogen levels in ischemic stroke	up to 1,725 European ancestry cases, up to 258 African ancestry cases, up to 117 cases	NA	Xq25	GLUD2	rs2801231-?		5E-7				Illumina [7500450] (imputed)	N
1509	chrX	121231251	121231252	rs2380274	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	Xq25	NR	rs2380274-?	NR	5E-14				Affymetrix [NR]	N
1511	chrX	121391198	121391199	rs1166813	27639821	Scherag A	2016-09-15	EBioMedicine	Genetic Factors of the Disease Course after Sepsis: A Genome-Wide Study for 28Day Mortality.	Mortality in sepsis	149 European ancestry cases, 591 European ancestry controls	up to 2,534 individuals	Xq25	GRIA3	rs1166813-G	NR	4E-6	(European)	2.31	NR	Illumina [7993459] (imputed)	N
1511	chrX	121450084	121450085	rs2448858	34469433	Ashvetiya T	2021-09-01	PLoS One	Identification of novel genetic susceptibility loci for thoracic and abdominal aortic aneurysms via genome-wide association study using the UK Biobank Cohort.	Thoracic aortic aneurysms	435 European, Indian, Caribbean, African ancestry cases, 8,700 European, Indian, Caribbean, African ancestry ancestry controls	NA	Xq25		rs2448858-?	NR	6E-7		1.65074		NR [NR] (imputed)	N
1515	chrX	121967358	121967359	rs4559365	30946739	Hu B	2019-04-04	PLoS Genet	Genome-wide association study reveals sex-specific genetic architecture of facial attractiveness.	Facial attractiveness (male raters)	3,921 European ancestry individuals	NA	Xq25		rs4559365-?	NR	6E-6				Illumina [156615] (imputed)	N
1515	chrX	121967358	121967359	rs4559365	23319000	Luykx JJ	2013-01-15	Mol Psychiatry	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (MHPG)	up to 398 European ancestry individuals	NA	Xq25	intergenic	rs4559365-A		9E-6		0.2955	unit decrease	Illumina [5767231] (imputed)	N
1515	chrX	121982731	121982732	rs4620417	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	Xq25	NR	rs4620417-?	NR	7E-6		1.6463	[0.86-2.44] unit increase	Illumina [at least 560000] (imputed)	N
1520	chrX	122570929	122570930	rs524654	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	Xq25		rs524654-?	NR	5E-6		0.946927	[0.92-0.97]	NR [685523]	N
1521	chrX	122735220	122735221	rs2473181	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	Xq25		rs2473181-C	NR	3E-8		0.0067	[0.0043-0.0091] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1521	chrX	122735220	122735221	rs2473181	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	Xq25		rs2473181-C	NR	6E-12		0.0104	[0.0075-0.0133] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
1521	chrX	122735220	122735221	rs2473181	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	Xq25	THOC2	rs2473181-C	0.293989	2E-10		0.012912682	[0.0089-0.0169] unit increase	Affymetrix [93095623] (imputed)	N
1521	chrX	122735220	122735221	rs2473181	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	Xq25	NR	rs2473181-G	0.707174	4E-16		0.0057361	[0.0042-0.0072] unit increase	Affymetrix [16582909] (imputed)	N
1521	chrX	122735220	122735221	rs2473181	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	Xq25	NR	rs2473181-G	0.707174	5E-12		0.00547597	[0.0038-0.0071] unit increase	Affymetrix [16582965] (imputed)	N
1521	chrX	122774140	122774140	rs34592298	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	Xq25		rs34592298-ACCT	NR	2E-8		0.0106	[0.0069-0.0143] unit increase	Affymetrix, Illumina [20529698] (imputed)	N
1521	chrX	122782270	122782271	rs6608109	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	Xq25		rs6608109-C	NR	3E-14		0.0143	[0.011-0.018] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
1522	chrX	122850302	122850303	rs73547906	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	Xq25	NR	rs73547906-C	0.711705	8E-11		0.0055961	[0.0038-0.0074] unit increase	Affymetrix [16582621] (imputed)	N
1522	chrX	122850302	122850303	rs73547906	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	Xq25	NR	rs73547906-C	0.711705	1E-9		0.00554745	[0.0037-0.0074] unit increase	Affymetrix [16582614] (imputed)	N
1524	chrX	123173490	123173491	rs11352016	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	Xq25		rs11352016-C	NR	9E-12		0.0158	[0.011-0.02] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
1524	chrX	123173490	123173491	rs11352016	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	Xq25		rs11352016-C	NR	1E-8		0.0131	[0.0086-0.0176] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
1524	chrX	123173490	123173491	rs11352016	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	Xq25	STAG2	rs11352016-C	0.76565	2E-23		0.021842204	[0.018-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1524	chrX	123173490	123173491	rs11352016	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	Xq25	STAG2	rs11352016-C	0.765608	4E-15		0.0172707	[0.013-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1525	chrX	123259529	123259530	rs4825885	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	Xq25	STAG2	rs4825885-G	0.766665	4E-31		0.02564883	[0.021-0.03] unit increase	Affymetrix [93095623] (imputed)	N
1525	chrX	123291286	123291287	rs34471784	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	Xq25	STAG2	rs34471784-A	0.237162	4E-10		0.013629841	[0.0094-0.0179] unit decrease	Affymetrix [93095623] (imputed)	N
1529	chrX	123751758	123751759	rs73558352	28701861	Randall CL	2017-06-15	Pain Res Manag	A Preliminary Genome-Wide Association Study of Pain-Related Fear: Implications for Orofacial Pain.	Fear of minor pain	Up to 1,367 European ancestry individuals, up to 159 African American individuals, up to 13 Hispanic individuals, up to 23 Asian, Native American and other ancestry individuals, up to 21 individuals	NA	Xq25	NR	rs73558352-T	0.02	5E-7		2.0	unit decrease	Illumina [8591557] (imputed)	N
1531	chrX	124073661	124073662	rs7060947	22610502	Kennedy RB	2012-05-19	Hum Genet	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IFN-alpha)	Up to 512 European ancestry individuals, up to 199 African American individuals	NA	Xq25	ODZ1	rs7060947-G		1E-7	(AA)			Illumina [NR]	N
1536	chrX	124649673	124649674	rs144150047	30468137	Fabbri C	2018-11-23	Br J Psychiatry	Genome-wide association study of treatment-resistance in depression and meta-analysis of three independent samples.	Depressive symptom improvement	1,378 European ancestry treatment resistant cases, 934 European ancestry responders to first treatment	NA	Xq25	AL645819.1	rs144150047-T	0.04	5E-6		0.25	[0.15-0.35] unit increase	Affymetrix, Illumina [7000000] (imputed)	N
1536	chrX	124700567	124700568	rs177010	30842574	Luciano M	2019-03-06	Mol Psychiatry	The influence of X chromosome variants on trait neuroticism.	Neuroticism	405,274 European ancestry individuals	NA	Xq25	NR	rs177010-T	0.2801	3E-11		0.0136	[0.0097-0.0175] unit increase	Illumina [1686693] (imputed)	N
1537	chrX	124852426	124852427	rs187701287	30842574	Luciano M	2019-03-06	Mol Psychiatry	The influence of X chromosome variants on trait neuroticism.	Neuroticism	405,274 European ancestry individuals	NA	Xq25	NR	rs187701287-T	0.2971	1E-10		0.0129	[0.009-0.0168] unit increase	Illumina [1686693] (imputed)	N
1538	chrX	124978259	124978259	rs764018176	30842574	Luciano M	2019-03-06	Mol Psychiatry	The influence of X chromosome variants on trait neuroticism.	Neuroticism	405,274 European ancestry individuals	NA	Xq25	NR	rs764018176-G	0.7338	1E-8		0.0122	[0.0079-0.0165] unit decrease	Illumina [1686693] (imputed)	N
1541	chrX	125384432	125384433	rs2186039	34069769	Al-Sarraj Y	2021-05-18	Genes (Basel)	Family-Based Genome-Wide Association Study of Autism Spectrum Disorder in Middle Eastern Families.	Autism spectrum disorder	487 Middle Eastern ancestry individuals from 171 families	NA	Xq25	DCAF12L2	rs2186039-C	0.412	3E-6		1.08	[1.04-1.13]	Illumina [516320]	N
1542	chrX	125449262	125449263	rs775032516	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-to-hip ratio adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,049 whole genome sequenced individuals, 29,518 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,001 Mylopotamos (founder/genetic isolate) individuals, 867 Pomak (founder/genetic isolate) individuals	206,045 European ancestry individuals	Xq25	DCAF12L2	rs775032516-A	0.0026	5E-6		1.1724	[0.67-1.67] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1542	chrX	125449262	125449263	rs775032516	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-hip ratio	1,254 whole genome sequenced European ancestry individuals, 3,071 whole genome sequenced individuals, 29,723 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,053 Mylopotamos (founder/genetic isolate) individuals, 879 Pomak (founder/genetic isolate) individuals	206,053 European ancestry individuals	Xq25	DCAF12L2	rs775032516-A	0.0022	6E-6		1.142	[0.65-1.64] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1543	chrX	125594410	125594411	rs5929781	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	Xq25		rs5929781-A	NR	4E-17		0.013	[0.01-0.016] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
1543	chrX	125625155	125625156	rs5931115	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	Xq25		rs5931115-T	NR	3E-24		0.0167	[0.014-0.02] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
1544	chrX	125730829	125730830	rs767669906	30980028	de Kovel CGF	2019-04-12	Sci Rep	The molecular genetics of hand preference revisited.	Handedness (Right-handed vs. non-right-handed)	293,857 British ancestry cases, 37,180 British ancestry controls	NA	Xq25	DCAF12L1	rs767669906-?	NR	1E-8				Affymetrix [~ 15000000] (imputed)	N
1551	chrX	126653356	126653357	rs723557	26307654	Szulkin R	2015-08-25	Cancer Epidemiol Biomarkers Prev	Genome-wide association study of prostate cancer-specific survival.	Prostate cancer (survival)	7,322 cases	18,197 European ancestry cases	Xq25	NR	rs723557-G	0.08	6E-7		1.15	[1.09-1.22]	Affymetrix, Illumina [up to 9536409] (imputed)	N
1553	chrX	126939016	126939017	rs182727	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	Xq25	NR	rs182727-?	NR	2E-6				Affymetrix [NR]	N
1559	chrX	127728548	127728549	rs141216986	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	Xq25	ACTRT1, SMARCA1	rs141216986-C		8E-8	(EA)	0.8	unit increase	Affymetrix [at least 2696785] (imputed)	N
1559	chrX	127728548	127728549	rs141216986	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	Xq25	ACTRT1, SMARCA1	rs141216986-C		2E-8		0.818	unit increase	Affymetrix [at least 2696785] (imputed)	N
1559	chrX	127728548	127728549	rs141216986	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	Xq25	ACTRT1, SMARCA1	rs141216986-C		7E-8		0.524	unit increase	Affymetrix [at least 2696785] (imputed)	N
1559	chrX	127728548	127728549	rs141216986	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	Xq25	ACTRT1, SMARCA1	rs141216986-C		2E-7	(EA)	0.522	unit increase	Affymetrix [at least 2696785] (imputed)	N
1561	chrX	128002268	128002269	rs73553988	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia x sex interaction	31,567 European ancestry cases, 37,494 European ancestry controls, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	NA	Xq25	ACTRT1, SMARCA1	rs73553988-T	0.0931	7E-6		0.1749	[0.099-0.251] unit decrease	NR [NR] (imputed)	N
1561	chrX	128002268	128002269	rs73553988	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia x sex interaction	31,567 European ancestry cases, 37,494 European ancestry controls	NA	Xq25	ACTRT1, SMARCA1	rs73553988-T	0.0931	7E-6		0.1749	[0.099-0.251] unit decrease	NR [NR] (imputed)	N
1561	chrX	128052265	128052266	rs5975063	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	Xq25	NR	rs5975063-?	NR	5E-6	(Native Hawaiian)	0.9373	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1562	chrX	128060192	128060193	rs5932545	30898391	Lawrenson K	2019-03-19	Gynecol Oncol	Genome-wide association studies identify susceptibility loci for epithelial ovarian cancer in east Asian women.	Epithelial ovarian cancer	3,238 East Asian ancestry cases, 4,083 East Asian ancestry controls	NA	Xq25		rs5932545-?	NR	3E-6	(endometrioid)	1.45		Illumina [11595112] (imputed)	N
1567	chrX	128735198	128735199	rs16999497	28753643	Yeo A	2017-07-28	PLoS One	Pharmacogenetic meta-analysis of baseline risk factors, pharmacodynamic, efficacy and tolerability endpoints from two large global cardiovascular outcomes trials for darapladib.	Diarrhoea in darapladib-treated cardiovascular disease (time to event)	481 European ancestry cases	NA	Xq26.1	intergenic	rs16999497-C	0.0385	6E-9		4.08	[2.56-6.67]	Affymetrix, Illumina [9334585] (imputed)	N
1568	chrX	128865060	128865061	rs11096255	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SOD2	5,356 Icelandic ancestry individuals	NA	Xq26.1		rs11096255-A	0.1841	4E-80		0.367198	[0.33-0.41] unit decrease	Illumina [7506463] (imputed)	N
1568	chrX	128870790	128870791	rs3788853	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	Xq26.1		rs3788853-A	NR	4E-8		0.0094	[0.0061-0.0127] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
1568	chrX	128871577	128871578	rs2050011	28369058	Folkersen L	2017-04-03	PLoS Genet	Mapping of 79 loci for 83 plasma protein biomarkers in cardiovascular disease.	Blood protein levels in cardiovascular risk	3,394 European ancestry individuals	2,639 individuals	Xq26.1	XPNPEP2	rs2050011-T	0.33	2E-68		0.36	unit decrease	Illumina [5270624] (imputed)	N
1568	chrX	128880613	128880614	rs3747343	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	Xq26.1	XPNPEP2	rs3747343-C	0.278719	3E-10		0.012912183	[0.0089-0.0169] unit increase	Affymetrix [93095623] (imputed)	N
1569	chrX	129093873	129093874	rs1024180	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	Xq26.1		rs1024180-C	NR	2E-18		0.021	[0.016-0.026] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1569	chrX	129094022	129094023	rs148281243	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	Xq26.1	RP4-537K23.4	rs148281243-A	0.080637	3E-13		0.02522153	[0.018-0.032] unit increase	Affymetrix [93095623] (imputed)	N
1569	chrX	129095838	129095839	rs73633938	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	Xq26.1	RP4-537K23.4	rs73633938-C	0.080727	2E-33		0.0412068	[0.034-0.048] unit decrease	Affymetrix [93095623] (imputed)	N
1569	chrX	129104733	129104734	rs2361405	24024966	Teumer A	2013-08-14	J Clin Periodontol	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (Mean PAL)	up to 4,032 European ancestry individuals	NA	Xq26.1	BCORL1	rs2361405-A	0.89	5E-6	(Age 20-60 years)	0.0677	[0.038-0.097] unit increase	Affymetrix, Illumina [up to 17585496] (imputed)	N
1570	chrX	129114783	129114784	rs180956060	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	Xq26.1		rs180956060-A	NR	2E-11		0.0226	[0.016-0.029] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
1570	chrX	129114783	129114784	rs180956060	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	Xq26.1	NR	rs180956060-G	0.897252	1E-29		0.0142107	[0.012-0.017] unit increase	Affymetrix [16582909] (imputed)	N
1570	chrX	129114783	129114784	rs180956060	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	Xq26.1	NR	rs180956060-G	0.896777	3E-23		0.0141382	[0.011-0.017] unit increase	Affymetrix [16582621] (imputed)	N
1570	chrX	129114783	129114784	rs180956060	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	Xq26.1	NR	rs180956060-G	0.897252	3E-18		0.0122801	[0.0095-0.015] unit increase	Affymetrix [16582965] (imputed)	N
1570	chrX	129114783	129114784	rs180956060	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	Xq26.1	NR	rs180956060-G	0.896777	4E-18		0.0131104	[0.01-0.0162] unit increase	Affymetrix [16582614] (imputed)	N
1570	chrX	129118808	129118809	rs146852038	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	Xq26.1	BCORL1	rs146852038-G	0.859389	4E-11		0.016494	[0.012-0.021] unit decrease	NR [16516521] (imputed)	N
1570	chrX	129147372	129147373	rs5932715	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	Xq26.1	BCORL1	rs5932715-A	0.113002	4E-9		0.017045582	[0.011-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1570	chrX	129181300	129181301	rs5977194	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	Xq26.1		rs5977194-G	NR	1E-8		0.0098	[0.0065-0.0131] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1570	chrX	129181300	129181301	rs5977194	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	Xq26.1		rs5977194-G	NR	5E-11		0.0123	[0.0086-0.016] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
1570	chrX	129181300	129181301	rs5977194	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	Xq26.1	BCORL1	rs5977194-G	0.448889	3E-9		0.011408979	[0.0076-0.0152] unit decrease	Affymetrix [93095623] (imputed)	N
1570	chrX	129199811	129199812	rs3788848	23064961	Shaffer JR	2012-10-11	J Dent Res	GWAS of dental caries patterns in the permanent dentition.	Dental caries	920 European ancestry individuals	NA	Xq26.1	BCORL1	rs3788848-?	NR	3E-6	(DMFS5,DMFS5max)			Illumina [518997]	N
1571	chrX	129246618	129246619	rs143386295	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 15, philtrum width)	2,187 European ancestry individuals	NA	Xq26.1	NR	rs143386295-T	0.00651	1E-6		0.7395	[0.43-1.05] unit decrease	Illumina [10677593] (imputed)	N
1571	chrX	129249132	129249132	rs10622586	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	Xq26.1		rs10622586-TCC	NR	3E-14		0.0145	[0.011-0.018] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
1571	chrX	129273247	129273248	rs209999	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	Xq26.1		rs209999-G	NR	4E-32		0.0138	[0.011-0.016] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1571	chrX	129285009	129285010	rs188076915	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	Xq26.1	ELF4, AIFM1, RAB33A	rs188076915-G	0.015000000000000013	5E-6		1.2708741		NR [9372253] (imputed)	N
1571	chrX	129325424	129325425	rs148300465	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	Xq26.1		rs148300465-C	NR	8E-11		0.0333	[0.023-0.043] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1571	chrX	129325424	129325425	rs148300465	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	Xq26.1		rs148300465-C	0.062089	8E-11		0.033333	[0.023-0.043] unit increase	Illumina [13479924] (imputed)	N
1571	chrX	129325424	129325425	rs148300465	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	Xq26.1		rs148300465-C	0.061893	3E-18		0.0333649	[0.026-0.041] unit increase	Illumina [13479295] (imputed)	N
1571	chrX	129325424	129325425	rs148300465	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	Xq26.1	RAB33A, ZNF280C	rs148300465-?	NR	2E-14		0.046965946	[0.035-0.059] unit increase	Illumina [27896057] (imputed)	N
1571	chrX	129353486	129353487	rs11299878	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	Xq26.1	ZNF280C	rs11299878-C	0.3789	8E-9		0.012383189	[0.0082-0.0166] unit increase	Affymetrix [93095623] (imputed)	N
1576	chrX	129970817	129970818	rs142456437	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	Xq26.1	ENOX2	rs142456437-C	0.0293290000000001	7E-9		0.032528028	[0.022-0.044] unit decrease	Affymetrix [93095623] (imputed)	N
1580	chrX	130423049	130423050	rs5932879	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	Xq26.1	NR	rs5932879-A	NR	4E-6		0.099	[0.057-0.141] unit decrease	Illumina [11133794] (imputed)	N
1580	chrX	130423342	130423343	rs202120382	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	Xq26.1		rs202120382-T	NR	2E-10		0.0387	[0.027-0.051] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1580	chrX	130423342	130423343	rs202120382	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	Xq26.1		rs202120382-T	0.024114	2E-10		0.0387292	[0.027-0.051] unit increase	Illumina [13479295] (imputed)	N
1580	chrX	130423687	130423688	rs6637831	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	Xq26.1		rs6637831-G	0.527956	6E-25		0.0177674	[0.014-0.021] unit decrease	NR [16516521] (imputed)	N
1580	chrX	130434000	130434001	rs5932886	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Age at voice drop	55,871 European ancestry individuals	NA	Xq26.2	IGSF1, OR13H1	rs5932886-?	NR	2E-10		0.031	[0.022-0.041] unit increase	Illumina [12039491]	N
1580	chrX	130436455	130436456	rs5932889	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first birth	542,901 European ancestry individuals	NA	Xq26.2	OR13H1	rs5932889-C	0.6473	5E-14		0.0896	[0.066-0.113] unit decrease	NR [9744772] (imputed)	N
1580	chrX	130534029	130534030	rs762080	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Menarche (age at onset)	76,831 European ancestry individuals	NA	Xq26.2	IGSF1, OR13H1	rs762080-?	NR	7E-12		0.035	[0.025-0.044] unit increase	Illumina [12039492]	N
1581	chrX	130584780	130584781	rs74382443	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	Xq26.2		rs74382443-A	0.619878	1E-9		0.011756386	[0.008-0.0155] unit increase	Affymetrix [93095623] (imputed)	N
1581	chrX	130590945	130590946	rs11797839	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	Xq26.2		rs11797839-G	NR	3E-9		0.0097	[0.0066-0.0128] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1585	chrX	131178649	131178650	rs774534540	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (severe respiratory symptoms vs population)	1,128 European ancestry cases, 679,531 European ancestry controls, 245 Hispanic or Latin American cases, 94,237 Hispanic or Latin American controls, 74 Black or African American cases, 22,383 Black or African American controls	NA	Xq26.2		rs774534540-?	NR	4E-7		0.9811652	[0.61-1.36] unit decrease	Illumina [9906551] (imputed)	N
1585	chrX	131178649	131178650	rs774534540	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid pneumonia vs population)	1,004 European ancestry cases, 680,354 European ancestry controls, 218 Hispanic or Latin American cases, 94,318 Hispanic or Latin American controls, 64 Black or African American cases, 22,412 Black or African American controls	NA	Xq26.2		rs774534540-?	NR	4E-7		1.0045888	[0.62-1.39] unit decrease	Illumina [9901720] (imputed)	N
1586	chrX	131210251	131210252	rs185326752	30894546	Ivarsdottir EV	2019-03-20	Nat Commun	Sequence variation at ANAPC1 accounts for 24% of the variability in corneal endothelial cell density.	Corneal endothelial cell density	6,125 Icelandic ancestry individuals	NA	Xq26.2	NR	rs185326752-T	NR	8E-7		0.983	unit increase	Illumina [NR]	N
1586	chrX	131231256	131231257	rs2064650	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	Xq26.2		rs2064650-A	NR	3E-8		0.0104	[0.0067-0.0141] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
1586	chrX	131231256	131231257	rs2064650	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	Xq26.2		rs2064650-A	NR	5E-9		0.0112	[0.0075-0.0149] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
1586	chrX	131251325	131251326	rs5933079	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	Xq26.2		rs5933079-T	NR	1E-17		0.014	[0.011-0.017] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
1586	chrX	131253360	131253361	rs5933080	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	Xq26.2	FRMD7	rs5933080-T	0.746415	3E-10		0.0135371	[0.0093-0.0178] unit increase	NR [13737936] (imputed)	N
1586	chrX	131300571	131300571	rs200879388	28877031	Zhang G	2017-09-07	N Engl J Med	Genetic Associations with Gestational Duration and Spontaneous Preterm Birth.	Gestational age at birth (maternal effect)	43,568 European ancestry mothers	8,643 European ancestry mothers	Xq26.2	RAP2C, FRMD7, STK26	rs200879388-?	0.351	3E-9		0.662	[NR] unit decrease	Illumina [15635593] (imputed)	N
1586	chrX	131312088	131312089	rs5930554	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Uterine fibroids	21,024 European ancestry cases, 237,694 European ancestry controls, 14,475 East Asian ancestry cases, 65,733 East Asian ancestry controls	NA	Xq26.2		rs5930554-C	NR	3E-43		0.1505	[0.13-0.17] unit increase	Affymetrix, Illumina [25795146] (imputed)	N
1586	chrX	131314261	131314262	rs12392108	31649266	Gallagher CS	2019-10-24	Nat Commun	Genome-wide association and epidemiological analyses reveal common genetic origins between uterine leiomyomata and endometriosis.	Uterine fibroids and heavy menstrual bleeding	3,409 European ancestry cases, 199,171 European ancestry controls	NA	Xq26.2	NR	rs12392108-A	0.31	5E-7		1.13	[1.08-1.19]	Affymetrix [10308721] (imputed)	N
1586	chrX	131314261	131314262	rs12392108	31649266	Gallagher CS	2019-10-24	Nat Commun	Genome-wide association and epidemiological analyses reveal common genetic origins between uterine leiomyomata and endometriosis.	Uterine fibroids	20,406 European ancestry cases, 223,918 European ancestry controls	15,068 European ancestry cases, 43,587 European ancestry controls	Xq26.2	RAP2C	rs12392108-A	0.31	6E-46		1.13	[1.11-1.15]	Affymetrix, Illumina [8662096] (imputed)	N
1586	chrX	131328836	131328837	rs1987421	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Uterine fibroids (MTAG)	5,236 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	Xq26.2	Intergenic	rs1987421-?		2E-6		1.07	[1.04-1.09]	Illumina [7645193] (imputed)	N
1586	chrX	131331591	131331592	rs5933120	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Uterine fibroids	5,236 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	Xq26.2	Intergenic	rs5933120-?		7E-6		1.2	[1.11-1.31]	Illumina [7645193] (imputed)	N
1587	chrX	131417174	131417175	rs183044457	30894546	Ivarsdottir EV	2019-03-20	Nat Commun	Sequence variation at ANAPC1 accounts for 24% of the variability in corneal endothelial cell density.	Corneal endothelial cell density	6,125 Icelandic ancestry individuals	NA	Xq26.2	NR	rs183044457-A	NR	8E-7		0.983	unit increase	Illumina [NR]	N
1587	chrX	131437942	131437943	rs5933142	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	Xq26.2		rs5933142-G	NR	2E-9		0.0164	[0.011-0.022] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
1589	chrX	131630986	131630987	rs141008342	30894546	Ivarsdottir EV	2019-03-20	Nat Commun	Sequence variation at ANAPC1 accounts for 24% of the variability in corneal endothelial cell density.	Corneal endothelial cell density	6,125 Icelandic ancestry individuals	NA	Xq26.2	NR	rs141008342-A	NR	8E-7		0.983	unit increase	Illumina [NR]	N
1590	chrX	131745310	131745311	rs242912	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	Xq26.2	MBNL3	rs242912-A	0.6618	2E-9		6.038	[6.03-6.04] z-score increase	Affymetrix, Illumina [10000000] (imputed)	N
1590	chrX	131768904	131768905	rs183103	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first birth	542,901 European ancestry individuals	NA	Xq26.2	HS6ST2	rs183103-T	0.7001	4E-13		0.0887	[0.065-0.113] unit increase	NR [9744772] (imputed)	N
1590	chrX	131802338	131802339	rs243466	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	Xq26.2	NR	rs243466-C	0.29632800000000004	5E-8		0.0130627	[0.0084-0.0177] unit increase	Affymetrix [16577424] (imputed)	N
1591	chrX	131940439	131940440	rs5977755	30842574	Luciano M	2019-03-06	Mol Psychiatry	The influence of X chromosome variants on trait neuroticism.	Neuroticism	405,274 European ancestry individuals	NA	Xq26.2	NR	rs5977755-C	0.4937	2E-8		0.0106	[0.0069-0.0143] unit increase	Illumina [1686693] (imputed)	N
1592	chrX	132024503	132024504	rs7892161	24024966	Teumer A	2013-08-14	J Clin Periodontol	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (Mean PAL)	up to 4,032 European ancestry individuals	NA	Xq26.2	HS6ST2	rs7892161-T	0.54	9E-6	(Age 20-60 years)	0.0413	[0.023-0.060] unit increase	Affymetrix, Illumina [up to 17585496] (imputed)	N
1593	chrX	132122782	132122783	rs4829750	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	Xq26.2	HS6ST2	rs4829750-A	0.5039	9E-13		7.147	[7.14-7.15] z-score increase	Affymetrix, Illumina [10000000] (imputed)	N
1593	chrX	132131089	132131090	rs5977798	30842574	Luciano M	2019-03-06	Mol Psychiatry	The influence of X chromosome variants on trait neuroticism.	Neuroticism	405,274 European ancestry individuals	NA	Xq26.2	NR	rs5977798-A	0.4892	3E-6		0.0085	[0.005-0.012] unit decrease	Illumina [1686693] (imputed)	N
1593	chrX	132137155	132137156	rs17324272	20041166	Fellay J	2009-12-24	PLoS Genet	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	Xq26.2	intergenic	rs17324272-?	NR	2E-7	(progression)			Illumina [NR]	N
1593	chrX	132217059	132217060	rs1413151	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	Xq26.2	NR	rs1413151-?	NR	1E-6				Affymetrix [NR]	N
1594	chrX	132263113	132263114	rs140551089	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid respiratory support vs population)	495 European ancestry cases, 680,440 European ancestry controls, 102 Hispanic or Latin American cases, 94,330 Hispanic or Latin American controls, 39 Black or African American cases, 22,410 Black or African American controls	NA	Xq26.2		rs140551089-?	NR	8E-7		0.8250933	[0.5-1.15] unit decrease	Illumina [9842460] (imputed)	N
1600	chrX	133067738	133067739	rs190598003	30894546	Ivarsdottir EV	2019-03-20	Nat Commun	Sequence variation at ANAPC1 accounts for 24% of the variability in corneal endothelial cell density.	Corneal endothelial cell density	6,125 Icelandic ancestry individuals	NA	Xq26.2	NR	rs190598003-C	NR	7E-7		0.955	unit increase	Illumina [NR]	N
1600	chrX	133125790	133125791	rs7883190	24068947	Brandler WM	2013-09-12	PLoS Genet	Common variants in left/right asymmetry genes and pathways are associated with relative hand skill.	Relative hand skill	2,666 European ancestry individuals	NA	Xq26.2	GPC3	rs7883190-?	0.62	2E-6		0.12	[0.071-0.169] unit increase	Illumina [NR]	N
1600	chrX	133134420	133134421	rs17324524	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	Xq26.2	NR	rs17324524-C	0.117	5E-10		1.059322	[1.04-1.08]	Affymetrix, Illumina [NR] (imputed)	N
1600	chrX	133166145	133166146	rs5975438	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	Xq26.2	GPC3	rs5975438-C	0.3274	4E-8		5.492	[5.49-5.5] z-score increase	Affymetrix, Illumina [10000000] (imputed)	N
1602	chrX	133322603	133322604	rs765132	20014019	Dubinsky MC	2010-08-01	Inflamm Bowel Dis	Genome wide association (GWA) predictors of anti-TNFalpha therapeutic responsiveness in pediatric inflammatory bowel disease.	Response to anti-TNF alpha therapy in inflammatory bowel disease	94 pediatric cases	NA	Xq26.2	NR	rs765132-?	NR	1E-6		35.0	[NR]	Illumina [301742]	N
1602	chrX	133345287	133345288	rs12850804	24556642	Zeng Z	2014-02-18	Caries Res	Genome-wide association study of primary dentition pit-and-fissure and smooth surface caries.	Pit-and-Fissure caries	979 European ancestry individuals	NA	Xq26.2	CCDC160	rs12850804-T	0.1345	2E-6		0.7501	[NR] unit increase	Illumina [1216074] (imputed)	N
1602	chrX	133375540	133375541	rs34779005	30842574	Luciano M	2019-03-06	Mol Psychiatry	The influence of X chromosome variants on trait neuroticism.	Neuroticism	405,274 European ancestry individuals	NA	Xq26.2	NR	rs34779005-T	0.8935	4E-6		0.0137	[0.0078-0.0196] unit increase	Illumina [1686693] (imputed)	N
1603	chrX	133484641	133484642	rs182409846	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	Xq26.2		rs182409846-C	NR	3E-9		0.0183	[0.012-0.024] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
1603	chrX	133484641	133484642	rs182409846	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	Xq26.2		rs182409846-C	NR	5E-10		0.0198	[0.014-0.026] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
1603	chrX	133537948	133537949	rs113049036	30842574	Luciano M	2019-03-06	Mol Psychiatry	The influence of X chromosome variants on trait neuroticism.	Neuroticism	405,274 European ancestry individuals	NA	Xq26.2	NR	rs113049036-A	0.4617	3E-6		0.0086	[0.0051-0.0121] unit decrease	Illumina [1686693] (imputed)	N
1604	chrX	133600985	133600986	rs17324664	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	Xq26.2		rs17324664-A	NR	7E-10		0.015	[0.01-0.02] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
1604	chrX	133635387	133635388	rs6638249	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	Xq26.3		rs6638249-G	NR	1E-9		0.0157	[0.011-0.021] unit increase	Affymetrix, Illumina [20528270] (imputed)	N
1604	chrX	133646752	133646753	rs73560966	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	Xq26.3		rs73560966-T	NR	2E-10		0.1449	[0.1-0.19] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
1604	chrX	133650559	133650560	rs6638255	30842574	Luciano M	2019-03-06	Mol Psychiatry	The influence of X chromosome variants on trait neuroticism.	Neuroticism	405,274 European ancestry individuals	NA	Xq26.3	NR	rs6638255-A	0.0988	8E-6		0.0138	[0.0077-0.0199] unit decrease	Illumina [1686693] (imputed)	N
1604	chrX	133680546	133680547	rs757309	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	Xq26.3	NR	rs757309-A	0.640848	1E-15		0.0178789	[0.013-0.022] unit increase	Affymetrix [16577424] (imputed)	N
1604	chrX	133683589	133683590	rs7065171	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	Xq26.3		rs7065171-G	0.783305	2E-18		0.018769	[0.015-0.023] unit increase	Illumina [13479295] (imputed)	N
1604	chrX	133683589	133683590	rs7065171	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	Xq26.3	NR	rs7065171-G	0.654548	3E-8		0.00634344	[0.0041-0.0086] unit increase	Affymetrix [16578495] (imputed)	N
1604	chrX	133683589	133683590	rs7065171	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	Xq26.3	NR	rs7065171-G	0.654131	2E-16		0.0179545	[0.014-0.022] unit increase	Affymetrix [16577313] (imputed)	N
1604	chrX	133683589	133683590	rs7065171	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	Xq26.3	LINC00629	rs7065171-?	NR	1E-14		0.02647431	[0.02-0.033] unit increase	Illumina [27896057] (imputed)	N
1604	chrX	133685243	133685244	rs2503987	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	Xq26.3		rs2503987-G	NR	5E-32		0.0145	[0.012-0.017] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1604	chrX	133691737	133691738	rs73241342	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	Xq26.3	NR	rs73241342-A	0.03949899999999995	3E-11		0.0286638	[0.02-0.037] unit increase	Affymetrix [16583148] (imputed)	N
1605	chrX	133698192	133698193	rs765928882	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	Xq26.3	PLAC1	rs765928882-T	0.9989	3E-7		1.3782	[0.85-1.91] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1605	chrX	133748411	133748412	rs4240134	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	Xq26.3		rs4240134-T	NR	8E-9		0.0122	[0.0081-0.0163] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
1605	chrX	133781442	133781444	rs777366020	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	Xq26.3		rs777366020-C	NR	9E-11		0.0143	[0.01-0.0186] unit decrease	Affymetrix, Illumina [20538307] (imputed)	N
1605	chrX	133805759	133805760	rs5975473	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	Xq26.3		rs5975473-C	NR	6E-28		0.0167	[0.014-0.02] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
1605	chrX	133808915	133808916	rs11796053	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	150,266 East Asian ancestry individuals	NA	Xq26.3		rs11796053-G	0.373706	6E-10		0.0157643	[0.011-0.021] unit decrease	Illumina [13478778] (imputed)	N
1605	chrX	133808915	133808916	rs11796053	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	Xq26.3	PLAC1	rs11796053-G	0.767044	7E-10		0.013391478	[0.0091-0.0177] unit increase	Affymetrix [93095623] (imputed)	N
1605	chrX	133808915	133808916	rs11796053	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	Xq26.3	HPRT1	rs11796053-G	0.4934	5E-8		5.454	NR z score increase	Illumina [26237160] (imputed)	N
1605	chrX	133820772	133820773	rs5933448	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	Xq26.3		rs5933448-?	NR	2E-20				NR [9705931] (imputed)	N
1606	chrX	133827867	133827868	rs11096402	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	Xq26.3	PLAC1	rs11096402-G	0.246767	3E-14		0.020853	[0.015-0.026] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1606	chrX	133827867	133827868	rs11096402	27680694	Horikoshi M	2016-10-13	Nature	Genome-wide associations for birth weight and correlations with adult disease.	Birth weight	133,903 European ancestry individuals	9,799 European ancestry individuals	Xq26.3	PLAC1	rs11096402-G	NR	1E-9		0.0276	[0.019-0.036] unit increase	Affymetrix, Illumina [at least 22434434] (imputed)	N
1607	chrX	134078168	134078169	rs137986605	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	Xq26.3	NR	rs137986605-?	NR	8E-8	(Latino)	0.6545	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1612	chrX	134686880	134686881	rs181213550	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference	1,254 whole genome sequenced European ancestry individuals, 3,074 whole genome sequenced individuals, 29,716 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 701 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,050 Mylopotamos (founder/genetic isolate) individuals, 883 Pomak (founder/genetic isolate) individuals	205,909 European ancestry individuals	Xq26.3	INTS6L	rs181213550-T	0.028	5E-6		0.5079	[0.29-0.73] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1615	chrX	135133960	135133961	rs150889544	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	Xq26.3	NR	rs150889544-?	NR	3E-6	(Latino)	0.8548	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1617	chrX	135268468	135268469	rs5975695	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Angina pectoris	30,025 European ancestry cases, 440,906 European ancestry controls, 14,007 East Asian ancestry cases, 145,158 East Asian ancestry controls	NA	Xq26.3		rs5975695-C	NR	3E-9		0.0445	[0.03-0.059] unit decrease	Affymetrix, Illumina [25842036] (imputed)	N
1617	chrX	135271244	135271245	rs926904	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	Xq26.3		rs926904-C	NR	2E-9		0.0095	[0.0064-0.0126] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1617	chrX	135271244	135271245	rs926904	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	Xq26.3		rs926904-C	NR	2E-10		0.0106	[0.0073-0.0139] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
1617	chrX	135283660	135283661	rs112160731	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	Xq26.3		rs112160731-A	NR	3E-11		0.0115	[0.0082-0.0148] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
1617	chrX	135378381	135378382	rs2073236	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	Xq26.3	GPR112	rs2073236-T	0.121	2E-8		5.599	[5.59-5.6] z-score decrease	Affymetrix, Illumina [10000000] (imputed)	N
1618	chrX	135460002	135460002	rs201177244	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	Xq26.3		rs201177244-GT	NR	4E-9		0.0083	[0.0056-0.011] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1620	chrX	135665777	135665778	rs2807264	26301688	Li YR	2015-08-24	Nat Med	Meta-analysis of shared genetic architecture across ten pediatric autoimmune diseases.	Pediatric autoimmune diseases	97 European ancestry thyroiditis cases, 107 European ancestry ankylosing spondylitis cases, 100 European ancestry psoriasis cases, 173 European ancestry celiac disease cases, 254 European ancestry systemic lupus erythematosus cases, 308 European ancestry common variable inmunodeficiency cases, 865 European ancestry ulcerative colitis cases, 1,086 European ancestry Type 1 diabetes cases, 1,123  European ancestry juvenile idiopathic arthritis cases, 1,922  European ancestry Crohn's disease cases, 10,718 European ancestry controls	NA	Xq26.3	CD40LG	rs2807264-C	0.21	1E-8				Illumina [7347414] (imputed)	N
1620	chrX	135689904	135689905	rs146181119	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	Xq26.3		rs146181119-A	NR	5E-9		0.0301	[0.02-0.04] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
1620	chrX	135730216	135730217	rs36206512	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	Xq26.3	CD40LG	rs36206512-C	0.035478	5E-10		0.032570947	[0.022-0.043] unit increase	Affymetrix [93095623] (imputed)	N
1620	chrX	135730216	135730217	rs36206512	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	Xq26.3	CD40LG	rs36206512-C	0.03549	1E-11		0.034749027	[0.025-0.045] unit increase	Affymetrix [93095623] (imputed)	N
1620	chrX	135741442	135741443	rs148594123	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CD40LG	5,365 Icelandic ancestry individuals	NA	Xq26.3		rs148594123-A	0.01211	4E-23		0.68828	[0.55-0.82] unit decrease	Illumina [7506463] (imputed)	N
1620	chrX	135741442	135741443	rs148594123	25147954	Enroth S	2014-08-22	Nat Commun	Strong effects of genetic and lifestyle factors on biomarker variation and use of personalized cutoffs.	CD40 ligand levels	up to 653 individuals	up to 317 individuals	Xq26.3	CD40LG	rs148594123-A	0.063163	1E-25		0.96	[0.78-1.14] unit decrease	Illumina [4840842] (imputed)	N
1621	chrX	135868082	135868083	rs12557857	34069769	Al-Sarraj Y	2021-05-18	Genes (Basel)	Family-Based Genome-Wide Association Study of Autism Spectrum Disorder in Middle Eastern Families.	Autism spectrum disorder	487 Middle Eastern ancestry individuals from 171 families	NA	Xq26.3	ARHGEF6	rs12557857-G	0.022	4E-6		1.29	[1.12-1.48]	Illumina [516320]	N
1621	chrX	135869175	135869176	rs67952556	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	Xq26.3	NR	rs67952556-T	0.522334	3E-20		0.015536	[0.012-0.019] unit increase	Affymetrix [16583148] (imputed)	N
1621	chrX	135869175	135869176	rs67952556	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	Xq26.3	NR	rs67952556-T	0.524108	9E-9		0.0145261	[0.0094-0.0197] unit increase	Affymetrix [16585745] (imputed)	N
1621	chrX	135905968	135905969	rs62603531	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	Xq26.3		rs62603531-A	NR	1E-9		0.0108	[0.0073-0.0143] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
1622	chrX	135953602	135953603	rs113464554	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	Xq26.3		rs113464554-C	NR	7E-9		0.0117	[0.0078-0.0156] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
1622	chrX	135998134	135998135	rs144354831	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	Xq26.3		rs144354831-C	NR	2E-8		0.0098	[0.0065-0.0131] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
1622	chrX	136032126	136032127	rs12863738	26301688	Li YR	2015-08-24	Nat Med	Meta-analysis of shared genetic architecture across ten pediatric autoimmune diseases.	Pediatric autoimmune diseases	97 European ancestry thyroiditis cases, 107 European ancestry ankylosing spondylitis cases, 100 European ancestry psoriasis cases, 173 European ancestry celiac disease cases, 254 European ancestry systemic lupus erythematosus cases, 308 European ancestry common variable inmunodeficiency cases, 865 European ancestry ulcerative colitis cases, 1,086 European ancestry Type 1 diabetes cases, 1,123  European ancestry juvenile idiopathic arthritis cases, 1,922  European ancestry Crohn's disease cases, 10,718 European ancestry controls	NA	Xq26.3	RBMX	rs12863738-T	0.17	6E-8				Illumina [7347414] (imputed)	N
1623	chrX	136055294	136055295	rs1190739	21347282	Lettre G	2011-02-10	PLoS Genet	Genome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project.	HDL cholesterol	7,813 African American individuals	4,323 African American and Afro-Caribbean individuals	Xq26.3	intergenic	rs1190739-T	0.27	5E-6		0.0731	[0.042-0.104] unit decrease	Affymetrix [~ 2740000] (imputed)	N
1623	chrX	136113463	136113464	rs1190736	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	Xq26.3		rs1190736-A	NR	1E-14		0.0123	[0.0092-0.0154] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1623	chrX	136113463	136113464	rs1190736	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	Xq26.3	GPR101	rs1190736-A	0.277	1E-8	(Japanese)	0.017	[0.011-0.023] unit decrease	Illumina [6108953] (imputed)	N
1626	chrX	136500145	136500146	rs2840674	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	Xq26.3		rs2840674-A	NR	2E-9		0.0112	[0.0075-0.0149] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1626	chrX	136500145	136500146	rs2840674	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	Xq26.3		rs2840674-A	NR	3E-10		0.0126	[0.0087-0.0165] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
1626	chrX	136500762	136500763	rs1344035	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Myopia (age of diagnosis)	104,293 European ancestry individuals	NA	Xq26.3	NR	rs1344035-T	0.5332	2E-8		0.0343	[0.022-0.046] unit increase	Illumina [~ 10600000] (imputed)	N
1626	chrX	136572275	136572276	rs4829885	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	Xq26.3	ZIC3	rs4829885-?		2E-15				Affymetrix, Illumina [NR] (imputed)	N
1627	chrX	136648125	136648126	rs12843772	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 138)	19,670 European ancestry individuals	NA	Xq26.3		rs12843772-?	NR	4E-12				NR [9705931] (imputed)	N
1628	chrX	136767330	136767331	rs4463578	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	Xq26.3		rs4463578-C	NR	1E-9		0.0116	[0.0079-0.0153] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
1629	chrX	136911563	136911564	rs7891968	27632927	Einarsdottir E	2016-09-16	Sci Rep	Genome-wide association analysis reveals variants on chromosome 19 that contribute to childhood risk of chronic otitis media with effusion.	Otitis media (recurrent)	702 Finnish ancestry child cases, 2,073 Finnish ancestry controls	NA	Xq26.3	NR	rs7891968-?	NR	6E-6				Illumina [319683]	N
1629	chrX	136911563	136911564	rs7891968	27632927	Einarsdottir E	2016-09-16	Sci Rep	Genome-wide association analysis reveals variants on chromosome 19 that contribute to childhood risk of chronic otitis media with effusion.	Otitis media	803 Finnish ancestry child cases, 2,073 Finnish ancestry controls	NA	Xq26.3	NR	rs7891968-?	NR	2E-6				Illumina [319683]	N
1629	chrX	136955403	136955404	rs4829906	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 63)	3,566 European ancestry individuals	4,680 European ancestry individuals	Xq26.3		rs4829906-A	0.403840516	1E-13				Illumina [7417619] (imputed)	N
1629	chrX	136955403	136955404	rs4829906	28272467	Heilmann-Heimbach S	2017-03-08	Nat Commun	Meta-analysis identifies novel risk loci and yields systematic insights into the biology of male-pattern baldness.	Male-pattern baldness	10,846 European ancestry cases, 11,672 European ancestry controls	NA	Xq26.3		rs4829906-G	0.4	7E-9		0.09	[0.051-0.129] unit increase	Affymetrix, Illumina [8004650] (imputed)	N
1630	chrX	136982364	136982365	rs144245162	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first birth	542,901 European ancestry individuals	NA	Xq26.3	intergenic	rs144245162-A	0.0826	3E-8		0.1629	[0.11-0.22] unit increase	NR [9744772] (imputed)	N
1630	chrX	136982364	136982365	rs144245162	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first birth	124,088 European ancestry individuals	NA	Xq26.3	intergenic	rs144245162-A	0.1011	9E-7		0.1766	[0.11-0.25] unit increase	NR [9467402] (imputed)	N
1630	chrX	137051038	137051039	rs148264830	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	Xq26.3		rs148264830-C	NR	2E-16		0.0211	[0.016-0.026] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1630	chrX	137057629	137057630	rs80345616	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	Xq26.3		rs80345616-T	NR	2E-14		0.0082	[0.006-0.0104] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1631	chrX	137164375	137164376	rs6635565	27490719	Bacelis J	2016-08-04	PLoS One	Literature-Informed Analysis of a Genome-Wide Association Study of Gestational Age in Norwegian Women and Children Suggests Involvement of Inflammatory Pathways.	Gestational age at birth in labor-initiated deliveries (child effect)	884 Norwegian ancestry children	NA	Xq26.3	NR	rs6635565-A		2E-6				NR [525577]	N
1631	chrX	137212881	137212882	rs671302	30842574	Luciano M	2019-03-06	Mol Psychiatry	The influence of X chromosome variants on trait neuroticism.	Neuroticism	405,274 European ancestry individuals	NA	Xq26.3	NR	rs671302-T	0.2664	6E-6		0.0101	[0.0058-0.0144] unit decrease	Illumina [1686693] (imputed)	N
1633	chrX	137416092	137416093	rs2129742	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atrial fibrillation/atrial flutter	29,212 European ancestry cases, 400,539 European ancestry controls, 4,150 East Asian ancestry cases, 155,540 East Asian ancestry controls	NA	Xq26.3		rs2129742-T	NR	2E-13		0.0711	[0.052-0.09] unit increase	Affymetrix, Illumina [25830072] (imputed)	N
1637	chrX	137943386	137943387	rs7060413	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Longevity	up to 482,000 European ancestry individuals	NA	Xq26.3	NR	rs7060413-A	NR	5E-7		0.01256	[0.0077-0.0175] unit decrease	Illumina [~ 540852]	N
1637	chrX	138013786	138013787	rs619373	23544012	Gaudet MM	2013-03-27	PLoS Genet	Identification of a BRCA2-specific modifier locus at 6p24 related to breast cancer risk.	Breast cancer in BRCA2 mutation carriers	4,330 European ancestry affected women, 3,881 European ancestry unaffected women	NA	Xq27.1	FGF13	rs619373-A	0.07	3E-6		1.3	[1.17-1.45]	Illumina [at least 200908] (imputed)	N
1638	chrX	138110873	138110874	rs12395693	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28+ CD45RA+ CD8+ T cell Absolute Count	3,408 Sardinian (founder/genetic isolate) ancestry individuals	NA	Xq27.1		rs12395693-T	0.05049	4E-8		0.1843	[0.12-0.25] unit increase	Illumina [18340221] (imputed)	N
1638	chrX	138117408	138117409	rs10521792	23006423	Niu N	2012-09-24	BMC Cancer	Genetic association with overall survival of taxane-treated lung cancer patients - a genome-wide association study in human lymphoblastoid cell lines followed by a clinical association study.	Response to taxane treatment (placlitaxel)	96 African American lymphoblastoid cell lines, 96 European ancestry lymphoblastoid cell lines, 96 Han Chinese ancestry lymphoblastoid cell lines	NA	Xq27.1	FGF13	rs10521792-?	NR	2E-7				Affymetrix, Illumina [~ 1300000]	N
1642	chrX	138544419	138544420	rs59386248	30842574	Luciano M	2019-03-06	Mol Psychiatry	The influence of X chromosome variants on trait neuroticism.	Neuroticism	405,274 European ancestry individuals	NA	Xq27.1	NR	rs59386248-T	0.8023	4E-6		0.0105	[0.006-0.015] unit decrease	Illumina [1686693] (imputed)	N
1642	chrX	138631214	138631215	rs374988	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	Xq27.1	MCF2	rs374988-?	NR	7E-6	(PC 34:4)	0.37594935	[0.21-0.54] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1642	chrX	138631214	138631215	rs374988	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	Xq27.1	MCF2	rs374988-?	NR	6E-6	(TAG 48:4)	0.3763143	[0.21-0.54] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1642	chrX	138631214	138631215	rs374988	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	Xq27.1	MCF2	rs374988-?	NR	4E-7	(PC 36:2)	0.4221909	[0.26-0.59] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1642	chrX	138631214	138631215	rs374988	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	Xq27.1	MCF2	rs374988-?	NR	4E-6	(SM 24:0)	0.38564253	[0.22-0.55] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1642	chrX	138631214	138631215	rs374988	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	Xq27.1	MCF2	rs374988-?	NR	2E-6	(PC 34:2)	0.39903572	[0.23-0.56] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1642	chrX	138631214	138631215	rs374988	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	Xq27.1	MCF2	rs374988-?	NR	1E-6	(PC 36:3)	0.4048951	[0.24-0.57] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1642	chrX	138633279	138633280	rs6048	31676865	Klarin D	2019-11-01	Nat Genet	Genome-wide association analysis of venous thromboembolism identifies new risk loci and genetic overlap with arterial vascular disease.	Venous thromboembolism	23,151 European ancestry cases, 553,439 European ancestry controls, 2,261 African American cases, 49,400 African American controls, 654 Hispanic cases, 21,214 Hispanic controls	17,672 cases, 167,295 controls	Xq27.1	F9	rs6048-A	0.716	3E-17		1.07	[1.05-1.09]	Affymetrix [up to 34000000] (imputed)	N
1642	chrX	138633279	138633280	rs6048	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 157,769 European ancestry controls	NA	Xq27.1	NR	rs6048-?	NR	8E-8		0.059	[0.037-0.081] unit increase	Affymetrix, Illumina [12923718] (imputed)	N
1644	chrX	138895060	138895061	rs141767077	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	Xq27.1	ATP11C	rs141767077-A	0.00597400000000004	4E-11		0.093549594	[0.066-0.121] unit increase	Affymetrix [93095623] (imputed)	N
1646	chrX	139166682	139166683	rs5907577	20889312	Wang KS	2010-10-01	Schizophr Res	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	Xq27.1	NR	rs5907577-?	NR	5E-6		1.2743	[NR]	Affymetrix [722112]	N
1647	chrX	139282090	139282091	rs426349	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	Xq27.1		rs426349-T	NR	1E-29		0.0125	[0.01-0.015] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1647	chrX	139282090	139282091	rs426349	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	Xq27.1		rs426349-T	0.497592	1E-13		0.0140428	[0.01-0.018] unit increase	Illumina [13479295] (imputed)	N
1647	chrX	139282090	139282091	rs426349	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	Xq27.1	LOC389895, SOX3	rs426349-?	NR	1E-13		0.02264051	[0.017-0.029] unit increase	Illumina [27896057] (imputed)	N
1647	chrX	139314055	139314056	rs5955415	20889312	Wang KS	2010-10-01	Schizophr Res	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	Xq27.1	NR	rs5955415-?	NR	2E-6		1.4612	[NR]	Affymetrix [722112]	N
1647	chrX	139314459	139314460	rs7067005	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Myopia (age of diagnosis)	104,293 European ancestry individuals	NA	Xq27.1	NR	rs7067005-T	0.0154	2E-22		0.884	[0.71-1.06] unit increase	Illumina [~ 10600000] (imputed)	N
1648	chrX	139381400	139381403	rs61324688	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	Xq27.1		rs61324688-T	NR	2E-9		0.0103	[0.007-0.0136] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1652	chrX	139946060	139946061	rs17002540	29551738	Dong J	2018-03-15	Clin Gastroenterol Hepatol	Interactions Between Genetic Variants and Environmental Factors Affect Risk of Esophageal Adenocarcinoma and Barrett's Esophagus.	Esophageal adenocarcinoma x pack-years of smoking exposure interaction	2,284 European ancestry cases, 2,182 European ancestry controls	NA	Xq27.1	CDR1, SPANXB2	rs17002540-C	0.81	6E-7		1.01	[NR]	Illumina [993501]	N
1653	chrX	140027568	140027569	rs11795855	35115690	Lopera-Maya EA	2022-02-03	Nat Genet	Effect of host genetics on the gut microbiome in 7,738 participants of the Dutch Microbiome Project.	Gut bacterial pathway abundance (ENTBACSYN.PWY..enterobactin.biosynthesis)	7,738 European ancestry individuals	NA	Xq27.1		rs11795855-G	0.282185435295105	4E-8		0.15342546	[0.099-0.208] unit increase	Illumina [5584686] (imputed)	N
1656	chrX	140493130	140493131	rs56376703	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MNX1	5,352 Icelandic ancestry individuals	NA	Xq27.2		rs56376703-A	0.01565	6E-12		0.116563	[0.083-0.15] unit increase	Illumina [7506463] (imputed)	N
1660	chrX	140967164	140967165	rs11095909	30130595	Dominguez-Cruz MG	2018-08-18	Gene	Pilot genome-wide association study identifying novel risk loci for type 2 diabetes in a Maya population.	Type 2 diabetes	45 Maya ancestry cases, 47 Maya ancestry controls	NA	Xq27.2	MAGEC3	rs11095909-T	0.4255	5E-7		4.909		Affymetrix [757439]	N
1660	chrX	140995711	140995712	rs41299076	34216518	Osman Y	2021-07-03	Int J Lab Hematol	Functional multigenic variations associated with hodgkin lymphoma.	Hodgkin's lymphoma	56 Greater Middle Eastern ancestry cases,  5 unknown ancestry cases, 36 Greater Middle Eastern ancestry controls	NA	Xq27.2	MAGEC1	rs41299076-T	0.331	7E-11		0.0254		Illumina [243345]	N
1661	chrX	141078551	141078552	rs57403204	31469419	Manichaikul A	2019-08-30	Int J Cancer	Identification of novel epithelial ovarian cancer loci in Women of African Ancestry.	High-grade serous ovarian cancer	537 African ancestry cases, 1,235 African ancestry controls	NA	Xq27.2	MAGEC1	rs57403204-G	0.064	2E-7		2.62	[1.83-3.76]	Illumina [11083029] (imputed)	N
1663	chrX	141360570	141360571	rs5954596	22808956	Lyons PA	2012-07-19	N Engl J Med	Genetically distinct subsets within ANCA-associated vasculitis.	Antineutrophil cytoplasmic antibody-associated vasculitis	914 European ancestry cases, 5,259 European ancestry controls	1,454 European ancestry cases, 1,666 European ancestry controls	Xq27.2	MAGEC2	rs5954596-?	NR	5E-9				Affymetrix [NR]	N
1663	chrX	141380145	141380146	rs2206224	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	Xq27.2		rs2206224-A	NR	7E-6		3.4286	[1.96-4.9] unit increase	Illumina [NR] (imputed)	N
1667	chrX	141860405	141860406	rs190783615	27622933	Li QS	2016-09-13	Transl Psychiatry	Analysis of 23andMe antidepressant efficacy survey data: implication of circadian rhythm and neuroplasticity in bupropion response.	Non-response to bupropion and depression	1,861 European ancestry non-responder cases, 192,070 European ancestry healthy controls	NA	Xq27.2	SPANXN4, MAGEC2	rs190783615-?		2E-17		15.18	[3.095-74.439]	Illumina [~ 12000000] (imputed)	N
1670	chrX	142220326	142220328	rs370551867	29748315	Pott J	2018-05-01	Circ Genom Precis Med	Genetic Regulation of PCSK9 (Proprotein Convertase Subtilisin/Kexin Type 9) Plasma Levels and Its Impact on Atherosclerotic Vascular Disease Phenotypes.	Plasma proprotein convertase subtilisin/kexin type 9 levels in stable coronary artery disease	2,022 European ancestry individuals without statin treatment, 1,268 European ancestry individuals with statin treatment	NR	Xq27.3	SPANXN4, PGBD4P6	rs370551867-T	0.012	1E-7		0.132	[NR] unit decrease	Affymetrix [9882017] (imputed)	N
1670	chrX	142253295	142253296	rs139618469	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	Xq27.3	NR	rs139618469-?	NR	4E-7		0.4553	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1673	chrX	142656442	142656443	rs6637027	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Uterine fibroids (MTAG)	5,236 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	Xq27.3	Intergenic	rs6637027-?		3E-6		1.0309278	[1.02-1.04]	Illumina [7645193] (imputed)	N
1673	chrX	142676396	142676397	rs148851274	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Uterine fibroids	5,236 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	Xq27.3	Intergenic	rs148851274-?		2E-6		1.14	[1.08-1.20]	Illumina [7645193] (imputed)	N
1673	chrX	142689989	142689990	rs12557126	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Creatine kinase levels	106,080 Japanese ancestry individuals	NA	Xq27.3	SPANXN3, SLITRK4	rs12557126-?	NR	7E-9		0.02077	[0.014-0.028] unit decrease novel	Illumina [6108953] (imputed)	N
1673	chrX	142716113	142716114	rs5907446	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SLITRK4	5,363 Icelandic ancestry individuals	NA	Xq27.3		rs5907446-G	0.4925	3E-18		0.129343	[0.1-0.16] unit increase	Illumina [7506463] (imputed)	N
1673	chrX	142717211	142717212	rs41300938	26379185	Garcia-Etxebarria K	2015-09-17	PLoS One	No Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity.	Severe influenza A (H1N1) infection	49 European ancestry severe cases, 549 European ancestry population controls	NA	Xq27.3	SLITRK4	rs41300938-?	0.0	2E-16				Affymetrix [547296]	N
1674	chrX	142747430	142747431	rs1884248	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid vs negative)	9,913 European ancestry cases, 85,072 European ancestry controls, 2,553 Hispanic or Latin American cases, 13,086 Hispanic or Latin American controls, 506 Black or African American cases, 3,110 Black or African American controls	NA	Xq27.3		rs1884248-?	NR	1E-6		0.13258304	[0.079-0.186] unit increase	Illumina [9939936] (imputed)	N
1674	chrX	142842118	142842119	rs139956886	24057671	Chimusa ER	2013-09-18	Hum Mol Genet	Genome-wide association study of ancestry-specific TB risk in the South African Coloured population.	Tuberculosis	642 South African coloured cases, 91 South African coloured controls	NA	Xq27.3	intergenic	rs139956886-C	0.98	6E-6		8.3333	[NR]	Affymetrix [up to 4467279] (imputed)	N
1678	chrX	143274241	143274242	rs190597399	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 13, vertical position of alar curvature relative to upper lip)	2,187 European ancestry individuals	NA	Xq27.3	NR	rs190597399-A	0.02271	4E-6		0.4133	[0.24-0.59] unit decrease	Illumina [10677593] (imputed)	N
1678	chrX	143364653	143364654	rs6637197	24554482	Leger PD	2014-02-20	J Neurovirol	Genome-wide association study of peripheral neuropathy with D-drug-containing regimens in AIDS Clinical Trials Group protocol 384.	Response to anti-retroviral therapy (ddI/d4T) in HIV-1 infection (Grade 2 peripheral neuropathy)	19 European ancestry cases, 30 African American cases, 9 Hispanic cases, 85 European ancestry controls, 49 African American controls, 30 Hispanic controls	NA	Xq27.3	intergenic	rs6637197-?		1E-6	(EA)	14.9	[NR]	Illumina [936149]	N
1679	chrX	143497861	143497862	rs11096128	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	Xq27.3	NR	rs11096128-?	NR	5E-10				Affymetrix [NR]	N
1681	chrX	143752567	143752568	rs2815675	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Sucrose liking	686 European ancestry twins	NA	Xq27.3	HNRNPCP10	rs2815675-C	0.6	9E-6		0.38	[0.22-0.54] unit increase	Illumina [5833901] (imputed)	N
1682	chrX	143863259	143863260	rs5919988	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	Xq27.3	UBE2NL	rs5919988-?	NR	4E-6	(indole-3-propionate)	0.15222594	[0.088-0.217] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1682	chrX	143914312	143914313	rs73637036	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (hospitalized covid vs population)	613 European ancestry cases, 680,416 European ancestry controls, 140 Hispanic or Latin American cases, 94,327 Hispanic or Latin American controls, 49 Black or African American cases, 22,410 Black or African American controls	NA	Xq27.3		rs73637036-?	NR	6E-6		0.8724512	[0.5-1.25] unit increase	Illumina [9875426] (imputed)	N
1684	chrX	144117252	144117253	rs5920419	30842574	Luciano M	2019-03-06	Mol Psychiatry	The influence of X chromosome variants on trait neuroticism.	Neuroticism	405,274 European ancestry individuals	NA	Xq27.3	NR	rs5920419-A	0.5543	4E-6		0.0085	[0.005-0.012] unit increase	Illumina [1686693] (imputed)	N
1684	chrX	144141318	144141319	rs6627057	20889312	Wang KS	2010-10-01	Schizophr Res	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	Xq27.3	CYCSP44	rs6627057-?	NR	1E-6		1.4569	[NR]	Affymetrix [722112]	N
1685	chrX	144209518	144209519	rs566103	25089948	Theusch E	2014-10-01	Pharmacogenet Genomics	Ancestry and other genetic associations with plasma PCSK9 response to simvastatin.	Response to simvastatin treatment (PCSK9 protein level change)	562 European ancestry individuals	287 African American individuals	Xq27.3	SPANXN1	rs566103-G	0.235	6E-6	(EA)	0.12	[NR] unit decrease	Illumina [570422]	N
1688	chrX	144576443	144576444	rs139208834	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 31)	19,670 European ancestry individuals	NA	Xq27.3		rs139208834-?	NR	3E-8				NR [9705931] (imputed)	N
1692	chrX	145137429	145137430	rs12850751	26989097	Coleman JR	2016-03-17	Br J Psychiatry	Genome-wide association study of response to cognitive-behavioural therapy in children with anxiety disorders.	Response to cognitive-behavioural therapy in anxiety disorder	Up to 902 European ancestry cases, up to 78 cases	NA	Xq27.3	Intergenic	rs12850751-?	0.0655	7E-6	(6-month follow-up)			Illumina [3017604] (imputed)	N
1693	chrX	145336727	145336728	rs7050911	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	Xq27.3	SLITRK2	rs7050911-?	NR	5E-6	(pantothenic acid)	0.68506694	[0.39-0.98] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1694	chrX	145475592	145475593	rs7066221	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	Xq27.3	SLITRK2	rs7066221-?	NR	7E-6	(pantothenic acid)	0.5143277	[0.29-0.74] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1695	chrX	145542291	145542292	rs7882341	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	Xq27.3		rs7882341-G	NR	9E-6		2.975	[1.69-4.26] unit increase	Illumina [NR] (imputed)	N
1696	chrX	145748907	145748908	rs381365	22610502	Kennedy RB	2012-05-19	Hum Genet	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IFN-alpha)	Up to 512 European ancestry individuals, up to 199 African American individuals	NA	Xq27.3	LOC100128265	rs381365-A		2E-12	(AA)			Illumina [NR]	N
1698	chrX	146011114	146011115	rs5905109	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	Xq27.3	FMR1NB	rs5905109-?	NR	1E-6	(thyroxine)	1.083292	[0.65-1.52] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1700	chrX	146257109	146257110	rs782269851	33602968	Skuladottir AT	2021-02-18	Sci Rep	A meta-analysis uncovers the first sequence variant conferring risk of Bell's palsy.	Bell's palsy	4,714 European ancestry cases, 1,011,520 European ancestry controls	NA	Xq27.3	intergenic	rs782269851-C	0.0014	8E-6		1.99831	NR	Affymetrix, Illumina [30341632] (imputed)	N
1701	chrX	146293706	146293707	rs2218611	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Endometriosis	645 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	Xq27.3	Intergenic	rs2218611-?		6E-6		1.38	[1.20-1.58]	Illumina [7645193] (imputed)	N
1701	chrX	146322622	146322623	rs5904726	21347282	Lettre G	2011-02-10	PLoS Genet	Genome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project.	LDL cholesterol	7,565 African American individuals	3,789 African American and Afro-Caribbean individuals	Xq27.3	intergenic	rs5904726-A	0.47	9E-6		0.0639	[0.036-0.092] unit increase	Affymetrix [~ 2740000] (imputed)	N
1702	chrX	146427058	146427058	rs782207398	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	Xq27.3	NR	rs782207398-T	0.672347	4E-16		0.00946207	[0.0072-0.0117] unit increase	Affymetrix [16578495] (imputed)	N
1702	chrX	146444526	146444527	rs5905042	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	Xq27.3	NR	rs5905042-C	0.690225	4E-22		0.0174486	[0.014-0.021] unit increase	Affymetrix [16583148] (imputed)	N
1702	chrX	146444526	146444527	rs5905042	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	Xq27.3	NR	rs5905042-C	0.691215	4E-22		0.0228475	[0.018-0.027] unit increase	Affymetrix [16577424] (imputed)	N
1703	chrX	146555330	146555331	rs597767	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	Xq27.3	FMR1NB	rs597767-?	NR	6E-6	(orotic acid)	0.17479984	[0.099-0.25] unit increase	Affymetrix [at least 2500000] (imputed)	N
1704	chrX	146717207	146717208	rs2719877	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	Xq27.3	NR	rs2719877-?	NR	5E-6				Affymetrix [NR]	N
1704	chrX	146788702	146788703	rs1030062	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	Xq27.3	NR	rs1030062-?	NR	1E-11				Affymetrix [NR]	N
1704	chrX	146792669	146792669	rs35011652	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	Xq27.3	RP11-434J24.2	rs35011652-A	0.9885	3E-6		0.417	[0.24-0.59] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1705	chrX	146882209	146882210	rs1868139	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	Xq27.3		rs1868139-C	0.419334469	5E-9		0.043070942	[0.029-0.058] unit increase	Illumina [13429769] (imputed)	N
1705	chrX	146882209	146882210	rs1868139	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	Xq27.3		rs1868139-C	NR	9E-11		0.0424	[0.03-0.055] unit increase	Affymetrix, Illumina [25845091] (imputed)	N
1705	chrX	146895119	146895120	rs2197706	30531935	Crowley JJ	2018-12-07	Mol Psychiatry	Common-variant associations with fragile X syndrome.	Fragile X syndrome	80 European ancestry male cases, 9 male cases, 266 European ancestry male controls	NA	Xq27.3	FMR1	rs2197706-A	0.351	3E-10		8.1	[4.24-15.49]	Illumina [750000]	N
1706	chrX	147042773	147042774	rs5904818	22808956	Lyons PA	2012-07-19	N Engl J Med	Genetically distinct subsets within ANCA-associated vasculitis.	Antineutrophil cytoplasmic antibody-associated vasculitis	914 European ancestry cases, 5,259 European ancestry controls	1,454 European ancestry cases, 1,666 European ancestry controls	Xq27.3	FMR1, FMR1NB	rs5904818-?	NR	2E-8				Affymetrix [NR]	N
1707	chrX	147085463	147085464	rs17320865	34719679	Hu SH	2021-10-31	Cell Discov	Discovery of new genetic loci for male sexual orientation in Han population.	Male sexual orientation	521 Han Chinese ancestry homosexual men, 1,270 Han Chinese ancestry heterosexual men	957 Han Chinese ancestry homosexual men, 2,043 Han Chinese ancestry heterosexual men	Xq28		rs17320865-A	NR	8E-9		1.31		Illumina [724550] (imputed)	N
1708	chrX	147324255	147324256	rs5936441	21177773	Moyer AM	2010-12-22	Toxicol Sci	Acetaminophen-NAPQI hepatotoxicity: a cell line model system genome-wide association study.	Response to acetaminophen (hepatotoxicity)	60 European ancestry lymphoblastoid cell lines, 56 African American lymphoblastoid cell lines, 60 Han Chinese American lymphoblastoid cell lines	NA	Xq28	LOC100129661	rs5936441-?	0.36	5E-6				Affymetrix, Illumina [1348864]	N
1709	chrX	147381020	147381021	rs2159767	18347602	Sullivan PF	2008-03-18	Mol Psychiatry	Genomewide association for schizophrenia in the CATIE study: results of stage 1.	Schizophrenia	417 European ancestry cases, 411 European ancestry controls, 217 African American cases, 219 African American controls, 104 American Indian, Asian, Pacific Islander or Hispanic/Latino ancestry cases, 103 American Indian, Asian, Pacific Islander or Hispanic/Latino ancestry controls	NA	Xq28	intergenic	rs2159767-?	0.62	7E-6		1.33	[NR]	Affymetrix [492900]	N
1710	chrX	147533487	147533488	rs5980526	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip and palate	121 Asian ancestry cases, 159 European ancestry cases, 285 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	Xq28	NR	rs5980526-?	NR	3E-7		0.49	[0.44-0.55]	Illumina [539000] (imputed)	N
1710	chrX	147554908	147554909	rs16994583	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	Xq28		rs16994583-A	0.08474	3E-12		0.023588631	[0.017-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
1710	chrX	147558204	147558205	rs113116706	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	Xq28		rs113116706-C	0.0818990000000001	3E-17		0.029203735	[0.022-0.036] unit increase	Affymetrix [93095623] (imputed)	N
1710	chrX	147579516	147579517	rs5980369	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	Xq28	AFF2	rs5980369-A	0.159801	4E-14		0.020964263	[0.016-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1710	chrX	147583957	147583958	rs1978082	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	Xq28		rs1978082-A	NR	7E-22		0.0187	[0.015-0.022] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
1710	chrX	147583957	147583958	rs1978082	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	349,856 European ancestry individuals, 91,908 East Asian ancestry individuals	NA	Xq28		rs1978082-A	NR	1E-13		0.0125	[0.0092-0.0158] unit increase	Affymetrix, Illumina [20529536] (imputed)	N
1710	chrX	147583957	147583958	rs1978082	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	Xq28	AFF2	rs1978082-A	0.574595	5E-25		0.019942991	[0.016-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1710	chrX	147583957	147583958	rs1978082	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	Xq28	AFF2	rs1978082-G	0.425409	2E-23		0.019013934	[0.015-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1710	chrX	147583957	147583958	rs1978082	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	Xq28	AFF2	rs1978082-A	0.574602	1E-28		0.022485832	[0.019-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1710	chrX	147583957	147583958	rs1978082	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	Xq28	AFF2	rs1978082-A	0.574599	2E-38		0.024977252	[0.021-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1711	chrX	147675012	147675013	rs199995491	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	Xq28	AFF2	rs199995491-G	0.004498	5E-10		0.08725634	[0.06-0.115] unit decrease	Affymetrix [93095623] (imputed)	N
1711	chrX	147683025	147683026	rs148665432	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	Xq28	AFF2	rs148665432-T	0.036403	8E-9		0.028715726	[0.019-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
1711	chrX	147683025	147683026	rs148665432	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	Xq28	AFF2	rs148665432-T	0.036419	7E-9		0.029143654	[0.019-0.039] unit increase	Affymetrix [93095623] (imputed)	N
1714	chrX	148063066	148063067	rs6419454	30842574	Luciano M	2019-03-06	Mol Psychiatry	The influence of X chromosome variants on trait neuroticism.	Neuroticism	405,274 European ancestry individuals	NA	Xq28	NR	rs6419454-T	0.7437	1E-6		0.0101	[0.006-0.0142] unit increase	Illumina [1686693] (imputed)	N
1716	chrX	148342662	148342663	rs6641173	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	Xq28	NR	rs6641173-?	NR	3E-16				Affymetrix [NR]	N
1717	chrX	148462071	148462072	rs17325431	25866641	Xu W	2015-03-19	Biomark Res	A genome wide association study on Newfoundland colorectal cancer patients' survival outcomes.	Survival in colon cancer	334 European ancestry cases	NA	Xq28	intergenic	rs17325431-?		3E-6	(overall survival)	2.47	[1.69-3.61]	Illumina [729737]	N
1718	chrX	148532289	148532290	rs187733794	32157568	Strupp M	2020-03-10	Cerebellum	A Variation in FGF14 Is Associated with Downbeat Nystagmus in a Genome-Wide Association Study.	Idiopathic downbeat nystagmus	106 European ancestry cases, 2,609 European ancestry controls	NA	Xq28	IDS	rs187733794-T	0.02	4E-6		4.89	[2.48-9.65]	Illumina [7759885] (imputed)	N
1718	chrX	148567450	148567451	rs530501	20125193	Cirulli ET	2010-02-03	Eur J Hum Genet	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American individuals, up to 74 South Asian ancestry individuals	NA	Xq28	IDS	rs530501-?	NR	4E-6	(TrailsA)			Illumina [up to 563855]	N
1719	chrX	148678072	148678073	rs186408209	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	Xq28		rs186408209-T	NR	5E-6		1.8875	[1.09-2.68] unit decrease	Illumina [NR] (imputed)	N
1723	chrX	149175801	149175802	rs149518483	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	Xq28	LINC00894	rs149518483-A	0.00809700000000002	7E-27		0.11126927	[0.091-0.132] unit decrease	Affymetrix [93095623] (imputed)	N
1723	chrX	149175801	149175802	rs149518483	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	Xq28	LINC00894	rs149518483-A	0.008104	1E-19		0.09424796	[0.074-0.115] unit decrease	Affymetrix [93095623] (imputed)	N
1723	chrX	149175801	149175802	rs149518483	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	Xq28	LINC00894	rs149518483-A	0.008104	4E-23		0.10277537	[0.082-0.123] unit decrease	Affymetrix [93095623] (imputed)	N
1723	chrX	149182283	149182284	rs10449049	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	Xq28		rs10449049-G	NR	1E-32		0.0789	[0.066-0.092] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
1723	chrX	149235720	149235721	rs370676576	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	Xq28		rs370676576-G	NR	2E-27		0.0721	[0.059-0.085] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
1723	chrX	149279744	149279745	rs73638225	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	Xq28		rs73638225-G	NR	3E-30		0.0759	[0.063-0.089] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
1724	chrX	149333852	149333853	rs3895379	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	153,015 East Asian ancestry individuals	NA	Xq28		rs3895379-G	0.984038	2E-13		0.0736891	[0.054-0.093] unit increase	Illumina [13478961] (imputed)	N
1724	chrX	149335807	149335808	rs150522999	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Hematocrit	108,757 Japanese ancestry individuals	NA	Xq28	LINC00894, MIR2114	rs150522999-?	NR	4E-8		0.07492	[0.048-0.102] unit decrease novel	Illumina [6108953] (imputed)	N
1724	chrX	149341294	149341295	rs11094551	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	153,512 East Asian ancestry individuals	NA	Xq28		rs11094551-A	0.982868	2E-12		0.0708329	[0.051-0.091] unit increase	Illumina [13479135] (imputed)	N
1724	chrX	149341294	149341295	rs11094551	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	152,447 East Asian ancestry individuals	NA	Xq28		rs11094551-A	0.982881	9E-12		0.0675109	[0.048-0.087] unit increase	Illumina [13478948] (imputed)	N
1725	chrX	149544677	149544678	rs4828621	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	Xq28	MAMLD1	rs4828621-?		6E-11				Affymetrix, Illumina [NR] (imputed)	N
1725	chrX	149545746	149545747	rs1983610	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	Xq28	NR	rs1983610-C		3E-9		0.05	[0.032-0.068] unit increase	NR [NR]	N
1726	chrX	149635294	149635295	rs17252936	22610502	Kennedy RB	2012-05-19	Hum Genet	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IFN-alpha)	Up to 512 European ancestry individuals, up to 199 African American individuals	NA	Xq28	MAMLD1	rs17252936-G		6E-10	(AA)			Illumina [NR]	N
1726	chrX	149647247	149647248	rs6627558	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	Xq28	MAMLD1	rs6627558-A	0.15807	3E-11		0.016822062	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1726	chrX	149652119	149652120	rs6627226	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	Xq28	MAMLD1	rs6627226-G	0.219703	6E-10		0.013851233	[0.0095-0.0182] unit increase	Affymetrix [93095623] (imputed)	N
1726	chrX	149652119	149652120	rs6627226	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	Xq28	MAMLD1	rs6627226-G	0.219707	2E-12		0.01575943	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1726	chrX	149674385	149674386	rs679149	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	Xq28	MAMLD1	rs679149-T	0.398734	9E-18		0.01647961	[0.013-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1727	chrX	149716643	149716644	rs568249	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	Xq28		rs568249-A	NR	4E-8		0.0096	[0.0063-0.0129] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
1728	chrX	149861114	149861115	rs222378	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	Xq28		rs222378-T	NR	9E-11		0.0116	[0.0081-0.0151] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
1728	chrX	149870561	149870561	rs782333471	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	Xq28	MTMR1	rs782333471-CT	0.28978	6E-13		0.014885916	[0.011-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
1729	chrX	150017549	150017550	rs4240082	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SCGB3A1	5,360 Icelandic ancestry individuals	NA	Xq28		rs4240082-C	0.4118	4E-17		0.133064	[0.1-0.16] unit decrease	Illumina [7506463] (imputed)	N
1730	chrX	150104926	150104927	rs184506746	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	Xq28	CD99L2	rs184506746-T	0.0125	2E-8		0.1709	[0.12-0.23] unit decrease	Affymetrix, Illumina [33811881] (imputed)	N
1730	chrX	150114169	150114170	rs5969978	25387704	Malone SM	2014-12-01	Psychophysiology	Heritability and molecular-genetic basis of resting EEG activity: a genome-wide association study.	Electroencephalogram traits	2,383 European ancestry adolescents and 1,643 European ancestry adults from 1,613 families	NA	Xq28	intergenic	rs5969978-?	NR	4E-6	(Theta power, Cz)	0.064	[0.037-0.091] unit increase	Illumina [527829]	N
1731	chrX	150221811	150221812	rs187931886	33106475	Li QS	2020-10-26	Transl Psychiatry	Genome-wide association studies of antidepressant class response and treatment-resistant depression.	Response to antidepressants (non-treatment-resistant vs treatment-resistant depression)	21,649 European ancestry individuals with non-treatment-resistant depression, 3,857 European ancestry individuals with treatment-resistant depression	NA	Xq28	NR	rs187931886-G	NR	5E-6		0.8668	NR	Illumina [at least 560000] (imputed)	N
1731	chrX	150281060	150281061	rs552922	31533690	Orlova E	2019-09-18	BMC Oral Health	Pilot GWAS of caries in African-Americans shows genetic heterogeneity.	Dental caries (decayed and filled deciduous tooth surfaces)	96 African American children	NA	Xq28	NR	rs552922-?		4E-6		6.1	[3.99-8.21] unit increase	Illumina [~ 4900000] (imputed)	N
1731	chrX	150308702	150308703	rs5925529	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	Xq28		rs5925529-T	NR	5E-7		3.6209	[2.25-4.99] unit increase	Illumina [NR] (imputed)	N
1732	chrX	150343247	150343248	rs10218066	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	Xq28	NR	rs10218066-G	0.784775	3E-8		0.014648	[0.0095-0.0198] unit increase	Affymetrix [16577424] (imputed)	N
1732	chrX	150415978	150415979	rs12557937	30675382	Leblond CS	2019-01-21	NPJ Genom Med	Both rare and common genetic variants contribute to autism in the Faroe Islands.	Autism	36 European ancestry, 176 European ancestry controls	NA	Xq28	intergenic	rs12557937-A		4E-6				Illumina [1690491] (imputed)	N
1733	chrX	150475020	150475021	rs1961890	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Aspartate aminotransferase levels in excessive alcohol consumption	951 individuals	NA	Xq28	NR	rs1961890-?	NR	5E-6		0.0135	[0.0076-0.0194] unit decrease	Illumina [~ 7800000] (imputed)	N
1733	chrX	150524865	150524866	rs5924913	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 14)	19,670 European ancestry individuals	NA	Xq28		rs5924913-?	NR	3E-9				NR [9705931] (imputed)	N
1733	chrX	150526664	150526665	rs5970021	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	Xq28	NR	rs5970021-C	0.474405	5E-12		0.0111221	[0.0079-0.0144] unit increase	Affymetrix [16583148] (imputed)	N
1736	chrX	150893520	150893521	rs11094514	31508503	Warrier V	2019-09-03	Commun Biol	Social and non-social autism symptoms and trait domains are genetically dissociable.	Systemising	51,564 European ancestry individuals	NA	Xq28	FATE1	rs11094514-T	NR	1E-6		0.97724	[0.59-1.37] unit increase	NR [9955952] (imputed)	N
1739	chrX	151306538	151306539	rs5970218	30787463	Escala-Garcia M	2019-02-21	Br J Cancer	Genome-wide association study of germline variants and breast cancer-specific mortality.	Breast cancer specific mortality in breast cancer	7,697 European ancestry cases, 88,964 European ancestry controls	NA	Xq28	NR	rs5970218-?	NR	2E-6		1.5139649	[1.28-1.80]	Affymetrix, Illumina [~ 10400000] (imputed)	N
1739	chrX	151325006	151325007	rs4828683	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	Xq28		rs4828683-G	NR	5E-9		0.0085	[0.0056-0.0114] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1742	chrX	151655561	151655562	rs10856240	19734545	Need AC	2009-09-04	Hum Mol Genet	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA	Xq28	AC108171.5	rs10856240-?	0.2913	9E-6	(PC1)			Illumina [475971]	N
1745	chrX	152051222	152051223	rs182859029	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	Xq28	NSDHL	rs182859029-T	0.9936	8E-10		0.2459	[0.17-0.32] unit increase	Affymetrix, Illumina [33811881] (imputed)	N
1746	chrX	152201982	152201983	rs12841297	27490719	Bacelis J	2016-08-04	PLoS One	Literature-Informed Analysis of a Genome-Wide Association Study of Gestational Age in Norwegian Women and Children Suggests Involvement of Inflammatory Pathways.	Gestational age at birth in premature rupture of membrane-initiated deliveries (child effect)	225 Norwegian ancestry children	NA	Xq28	NR	rs12841297-G		7E-7				NR [525577]	N
1748	chrX	152443799	152443800	rs5924804	27490719	Bacelis J	2016-08-04	PLoS One	Literature-Informed Analysis of a Genome-Wide Association Study of Gestational Age in Norwegian Women and Children Suggests Involvement of Inflammatory Pathways.	Gestational age at birth in premature rupture of membrane-initiated deliveries (child effect)	225 Norwegian ancestry children	NA	Xq28	NR	rs5924804-G		8E-7				NR [525577]	N
1748	chrX	152561364	152561365	rs12558512	27490719	Bacelis J	2016-08-04	PLoS One	Literature-Informed Analysis of a Genome-Wide Association Study of Gestational Age in Norwegian Women and Children Suggests Involvement of Inflammatory Pathways.	Gestational age at birth in premature rupture of membrane-initiated deliveries (child effect)	225 Norwegian ancestry children	NA	Xq28	NR	rs12558512-C		1E-6				NR [525577]	N
1749	chrX	152590164	152590165	rs5970442	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	Xq28	NR	rs5970442-C	0.496409	8E-26		0.0267306	[0.022-0.032] unit increase	Affymetrix [16585745] (imputed)	N
1749	chrX	152605049	152605050	rs1894351	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	Xq28		rs1894351-G	NR	9E-10		0.0073	[0.0049-0.0097] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1749	chrX	152625374	152625375	rs768863	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	Xq28	NR	rs768863-T	0.500357	3E-14		0.00833812	[0.0063-0.0104] unit increase	Affymetrix [16578495] (imputed)	N
1749	chrX	152638743	152638744	rs67596711	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	Xq28	NR	rs67596711-T	0.500797	2E-43		0.0386841	[0.033-0.044] unit increase	Affymetrix [16580851] (imputed)	N
1750	chrX	152759860	152759861	rs11796997	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		Xq28	NR	rs11796997-A	NR	6E-10		0.06176	NR unit increase	NR [NR] (imputed)	N
1750	chrX	152768463	152768464	rs113300903	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	Xq28	BGN1	rs113300903-T	0.347572	3E-30		0.0262908	[0.022-0.031] unit increase	NR [19129689] (imputed)	N
1750	chrX	152785310	152785311	rs3020940	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Red cell distribution width	10,184 White ancestry individuals, 44 Asian ancestry individuals, 6,776 Black individuals, 11,978 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	Xq28		rs3020940-A	NR	4E-10		0.13	[0.091-0.169] unit increase	Illumina [76131582]	N
1751	chrX	152862637	152862638	rs12010175	22961080	Li H	2012-09-06	Diabetes	A genome-wide association study identifies GRK5 and RASGRP1 as type 2 diabetes loci in Chinese Hans.	Type 2 diabetes	1,839 Han Chinese ancestry cases, 1,873 Han Chinese ancestry controls	15,979 East Asian ancestry cases, 19,360 East Asian ancestry controls, 794 Malay ancestry cases, 1,240 Malay ancestry controls, 159 Filipino ancestry cases, 1,624 Filipino ancestry controls	Xq28	FAM58A	rs12010175-G	0.786	2E-9		1.21	[1.14-1.28]	Illumina [2234194] (imputed)	N
1751	chrX	152875583	152875584	rs5987107	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	150,266 East Asian ancestry individuals	NA	Xq28		rs5987107-G	0.666788	2E-10		0.0157191	[0.011-0.021] unit decrease	Illumina [13478778] (imputed)	N
1751	chrX	152875583	152875584	rs5987107	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Glomerular filtration rate	143,658 Japanese ancestry individuals	NA	Xq28	LOC105373383, DUSP9	rs5987107-?	NR	1E-11		0.02271	[0.016-0.029] unit increase novel	Illumina [6108953] (imputed)	N
1751	chrX	152875583	152875584	rs5987107	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Creatinine levels	142,097 Japanese ancestry individuals	NA	Xq28	LOC105373383, DUSP9	rs5987107-?	NR	1E-10		0.02069	[0.014-0.027] unit decrease novel	Illumina [6108953] (imputed)	N
1751	chrX	152890467	152890468	rs34792580	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	Xq28		rs34792580-C	NR	2E-22		0.0171	[0.014-0.02] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
1751	chrX	152890467	152890468	rs34792580	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	Xq28		rs34792580-C	0.269728	1E-22		0.020302668	[0.016-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1751	chrX	152890467	152890468	rs34792580	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	Xq28		rs34792580-C	0.269759	1E-27		0.022619998	[0.019-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1751	chrX	152890467	152890468	rs34792580	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	Xq28		rs34792580-C	0.269722	6E-27		0.022329537	[0.018-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1751	chrX	152892835	152892836	rs72616444	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	Xq28		rs72616444-A	NR	1E-15		0.0147	[0.011-0.018] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
1751	chrX	152892835	152892836	rs72616444	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	Xq28		rs72616444-A	NR	2E-22		0.0168	[0.013-0.02] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
1751	chrX	152892986	152892987	rs3020789	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	129,405 East Asian ancestry individuals	NA	Xq28		rs3020789-T	0.675975	1E-9		0.0184248	[0.013-0.024] unit decrease	Illumina [13475706] (imputed)	N
1751	chrX	152894550	152894551	rs5945324	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	Xq28	FAM58A, DUSP9	rs5945324-C	0.316	1E-11	(Japanese)	0.022	[0.016-0.028] unit increase	Illumina [6108953] (imputed)	N
1751	chrX	152896968	152896969	rs4898431	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	Xq28		rs4898431-G	NR	3E-9		0.0091	[0.0062-0.012] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1751	chrX	152898165	152898166	rs4391603	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	Xq28		rs4391603-A	0.33175423	1E-84		0.15279174	[0.14-0.17] unit decrease	Illumina [13429769] (imputed)	N
1751	chrX	152898165	152898166	rs4391603	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	163,835 East Asian ancestry individuals	NA	Xq28		rs4391603-A	0.321063	9E-10		0.0169591	[0.012-0.022] unit increase	Illumina [13479178] (imputed)	N
1751	chrX	152898259	152898260	rs4262465	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	Xq28	DUSP9	rs4262465-C	0.5754	6E-10		6.187	NR z score increase	Illumina [26237160] (imputed)	N
1751	chrX	152898260	152898261	rs4328011	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	Xq28		rs4328011-A	NR	4E-29		0.0167	[0.014-0.02] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
1751	chrX	152898260	152898261	rs4328011	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	Xq28		rs4328011-A	NR	4E-24		0.0138	[0.011-0.017] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
1751	chrX	152899921	152899922	rs5945326	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	Xq28		rs5945326-G	NR	8E-106		0.1203	[0.11-0.13] unit decrease	Affymetrix, Illumina [25845091] (imputed)	N
1751	chrX	152899921	152899922	rs5945326	23945395	Hara K	2013-08-14	Hum Mol Genet	Genome-wide association study identifies three novel loci for type 2 diabetes.	Type 2 diabetes	5,976 Japanese ancestry cases, 20,829 Japanese ancestry controls	24,416 East Asian ancestry cases, 13,985 East Asian ancestry controls	Xq28	DUSP9	rs5945326-A	0.68	2E-12		1.14	[1.10-1.18]	Illumina [6209637] (imputed)	N
1751	chrX	152899921	152899922	rs5945326	22961080	Li H	2012-09-06	Diabetes	A genome-wide association study identifies GRK5 and RASGRP1 as type 2 diabetes loci in Chinese Hans.	Type 2 diabetes	1,839 Han Chinese ancestry cases, 1,873 Han Chinese ancestry controls	15,979 East Asian ancestry cases, 19,360 East Asian ancestry controls, 794 Malay ancestry cases, 1,240 Malay ancestry controls, 159 Filipino ancestry cases, 1,624 Filipino ancestry controls	Xq28	DUSP9	rs5945326-A	0.606	7E-16		1.18	[1.13-1.23]	Illumina [2234194] (imputed)	N
1751	chrX	152899921	152899922	rs5945326	20581827	Voight BF	2010-06-27	Nat Genet	Twelve type 2 diabetes susceptibility loci identified through large-scale association analysis.	Type 2 diabetes	8,130 European ancestry cases, 38,987 European ancestry controls	Up to 34,412 European ancestry cases, 59,925 European ancestry controls	Xq28	DUSP9	rs5945326-A		3E-10		1.27	[1.18-1.37]	Affymetrix, Illumina [2426886] (imputed)	N
1751	chrX	152902767	152902768	rs4898432	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	Xq28		rs4898432-T	NR	1E-28		0.0216	[0.018-0.025] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
1751	chrX	152902767	152902768	rs4898432	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	Xq28		rs4898432-T	NR	2E-12		0.0135	[0.0098-0.0172] unit decrease	Affymetrix, Illumina [20535873] (imputed)	N
1751	chrX	152902767	152902768	rs4898432	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	133,336 East Asian ancestry individuals	NA	Xq28		rs4898432-T	0.319161	2E-9		0.0176993	[0.012-0.024] unit decrease	Illumina [13476509] (imputed)	N
1751	chrX	152904738	152904739	rs4898434	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	Xq28		rs4898434-T	0.311378	2E-10		0.0152662	[0.011-0.02] unit increase	Illumina [13479924] (imputed)	N
1751	chrX	152906291	152906292	rs3761536	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	71,221 East Asian ancestry individuals	NA	Xq28		rs3761536-T	0.322534	3E-14		0.0271187	[0.02-0.034] unit decrease	Illumina [13466143] (imputed)	N
1751	chrX	152907478	152907479	rs4243539	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	Xq28		rs4243539-T	NR	2E-18		0.014	[0.011-0.017] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
1751	chrX	152908886	152908887	rs1894299	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	Xq28		rs1894299-A	NR	2E-67		0.88433814	[0.872134500364528-0.896712601828505]	Illumina [8919992] (imputed)	N
1751	chrX	152908886	152908887	rs1894299	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	Xq28	DUSP9	rs1894299-G	0.68	9E-58		1.13	1.11-1.15	Illumina [12557761] (imputed)	N
1751	chrX	152909755	152909756	rs188225138	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Hemoglobin A1c levels	42,790 Japanese ancestry individuals	NA	Xq28	DUSP9	rs188225138-?	NR	3E-13		0.04273	[0.031-0.054] unit decrease novel	Illumina [6108953] (imputed)	N
1752	chrX	153006494	153006495	rs11156606	20889312	Wang KS	2010-10-01	Schizophr Res	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	Xq28	NR	rs11156606-?	NR	3E-6		1.4169	[NR]	Affymetrix [722112]	N
1752	chrX	153018274	153018275	rs138245006	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	Xq28	ABCD1	rs138245006-T	0.9676	2E-58		0.2512	[0.22-0.28] unit increase	Affymetrix, Illumina [33811881] (imputed)	N
1753	chrX	153189818	153189819	rs2269368	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Albumin-globulin ratio	98,626 Japanese ancestry individuals	NA	Xq28	ARHGAP4	rs2269368-?	NR	8E-10		0.02346	[0.016-0.031] unit decrease novel	Illumina [6108953] (imputed)	N
1753	chrX	153189818	153189819	rs2269368	19838195	Gateva V	2009-11-01	Nat Genet	A large-scale replication study identifies TNIP1, PRDM1, JAZF1, UHRF1BP1 and IL10 as risk loci for systemic lupus erythematosus.	Systemic lupus erythematosus	1,310 European ancestry cases, 7,859 European ancestry controls	1,963 European ancestry cases, 4,329 European ancestry controls	Xq28	IRAK1, MECP2	rs2269368-T	0.14	8E-7		1.11	[1.01-1.22]	Illumina [~ 2100000] (imputed)	N
1753	chrX	153192348	153192349	rs79022793	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	95,717 East Asian ancestry individuals	NA	Xq28		rs79022793-A	0.158592	4E-8		0.0317399	[0.02-0.043] unit increase	Illumina [13471431] (imputed)	N
1753	chrX	153192432	153192433	rs2269369	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	Xq28		rs2269369-A	NR	2E-16		0.0284	[0.022-0.035] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1753	chrX	153192432	153192433	rs2269369	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	Xq28		rs2269369-A	0.273614	2E-16		0.0284089	[0.022-0.035] unit increase	Illumina [13478928] (imputed)	N
1753	chrX	153207544	153207545	rs2269372	24043878	Wong EH	2013-09-16	Schizophr Bull	Common variants on Xq28 conferring risk of schizophrenia in Han Chinese.	Schizophrenia	481 Han Chinese ancestry cases, 2,025 Han Chinese ancestry controls	1,088 Han Chinese ancestry cases, 1,063 Han Chinese ancestry controls	Xq28	RENBP, MECP2, ARHGAP4	rs2269372-A	NR	4E-8		1.313	[NR]	Illumina [2383054] (imputed)	N
1753	chrX	153214462	153214462	rs201119463	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	Xq28		rs201119463-AACGC	NR	5E-8		0.0116	[0.0075-0.0157] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1753	chrX	153214462	153214462	rs201119463	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	Xq28		rs201119463-AACGC	NR	6E-13		0.016	[0.012-0.02] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
1754	chrX	153248247	153248248	rs13397	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis (ACPA-positive)	up to 9,585 European ancestry cases, up to 33,742 European ancestry controls	NA	Xq28	IRAK1, TMEM187, HCFC1	rs13397-A	0.12	1E-12		1.2747		Illumina [129464] (imputed)	N
1754	chrX	153248247	153248248	rs13397	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis	up to 13,838 European ancestry cases, up to 33,742 European ancestry controls	NA	Xq28	IRAK1, TMEM187, HCFC1	rs13397-A	0.12	3E-12		1.2342		Illumina [129464] (imputed)	N
1754	chrX	153248247	153248248	rs13397	22057235	Trynka G	2011-11-06	Nat Genet	Dense genotyping identifies and localizes multiple common and rare variant association signals in celiac disease.	Celiac disease	11,812 European ancestry cases, 229 Indian ancestry cases, 11,837 European ancestry controls, 391 Indian ancestry controls	NA	Xq28	HCFC1, TMEM187, IRAK1	rs13397-?	0.133	3E-8		1.18		Illumina [139553]	N
1754	chrX	153256434	153256435	rs6655269	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	Xq28		rs6655269-A	NR	8E-12		0.0133	[0.0096-0.017] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
1754	chrX	153260031	153260032	rs12353692	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	Xq28		rs12353692-T	NR	2E-23		0.0262	[0.021-0.031] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
1754	chrX	153264636	153264636	rs35059571	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	Xq28		rs35059571-AT	NR	1E-8		0.0139	[0.0092-0.0186] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
1754	chrX	153265974	153265975	rs11797074	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	Xq28		rs11797074-T	0.758877	3E-10		0.014120512	[0.0097-0.0185] unit decrease	Affymetrix [93095623] (imputed)	N
1754	chrX	153266171	153266172	rs5986948	26663301	Lessard CJ	2016-05-01	Arthritis Rheumatol	Identification of a Systemic Lupus Erythematosus Risk Locus Spanning ATG16L2, FCHSD2, and P2RY2 in Koreans.	Systemic lupus erythematosus	1,174 Korean ancestry cases, 4,246 Korean ancestry controls	739 Korean ancestry cases,  677 Chinese ancestry cases,  436 Korean ancestry controls, 709 Chinese ancestry controls	Xq28	TMEM187, MECP2, IRAK1	rs5986948-?	NR	4E-10		1.56	[1.35-1.79]	Illumina [NR]	N
1754	chrX	153279857	153279858	rs5945174	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	Xq28	IRAK1	rs5945174-A	0.824768	4E-23		0.024061369	[0.019-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
1754	chrX	153279857	153279858	rs5945174	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	Xq28	IRAK1	rs5945174-A	0.824796	6E-22		0.023521435	[0.019-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1754	chrX	153284191	153284192	rs1059702	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	Xq28	IRAK1	rs1059702-A	0.783	6E-54		1.356	[1.32-1.4]	Illumina [11270530] (imputed)	N
1754	chrX	153284191	153284192	rs1059702	32723749	Kwon YC	2020-07-28	Ann Rheum Dis	Genome-wide association study in a Korean population identifies six novel susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis	4,068 Korean ancestry cases, 36,487 Korean ancestry controls	NA	Xq28	IRAK1	rs1059702-?		5E-10		0.84	[0.79-0.89]	Illumina [NR] (imputed)	N
1754	chrX	153284191	153284192	rs1059702	26606652	Alarcon-Riquelme ME	2015-11-25	Arthritis Rheumatol	Genome-Wide Association Study in an Amerindian Ancestry Population Reveals Novel Systemic Lupus Erythematosus Risk Loci and the Role of European Admixture.	Systemic lupus erythematosus	862 Native American ancestry-enriched North American cases, 531 Native American ancestry-enriched South American cases, 1,973 Native American ancestry-enriched North American controls, 344 Native American ancestry-enriched South American controls	NA	Xq28	IRAK1	rs1059702-?	0.5	8E-14		1.724138	[1.47-2.04]	Illumina [580483] (imputed)	N
1754	chrX	153284482	153284483	rs1059701	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	Xq28	IRAK1	rs1059701-A	0.820263	3E-9		0.016999505	[0.011-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1754	chrX	153298873	153298874	rs3027933	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Non-albumin protein levels	98,538 Japanese ancestry individuals	NA	Xq28	MECP2	rs3027933-?	NR	5E-9		0.02511	[0.017-0.034] unit decrease novel	Illumina [6108953] (imputed)	N
1754	chrX	153301466	153301467	rs5987194	33310728	Ha E	2020-12-11	Ann Rheum Dis	Large-scale meta-analysis across East Asian and European populations updated genetic architecture and variant-driven biology of rheumatoid arthritis, identifying 11 novel susceptibility loci.	Rheumatoid arthritis	14,361 European ancestry cases, 43,923 European ancestry controls, 8,267 East Asian ancestry cases, 244,741 East Asian ancestry controls	NA	Xq28		rs5987194-C	NR	4E-22		1.15	[1.12-1.18]	NR [13810676] (imputed)	N
1754	chrX	153301466	153301467	rs5987194	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	Xq28	IRAK1	rs5987194-C	0.36	5E-16		1.16	[1.12-1.20]	Affymetrix, Illumina [up to 9739303] (imputed)	N
1754	chrX	153301466	153301467	rs5987194	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	Xq28	IRAK1	rs5987194-C	0.13	3E-12	(EA)	1.16	[1.12-1.21]	Affymetrix, Illumina [up to 9739303] (imputed)	N
1754	chrX	153311979	153311980	rs17435	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Snoring	359,916 European ancestry individuals	NA	Xq28	NR	rs17435-A	0.819	4E-8		1.0416667	[1.03-1.06]	Affymetrix, Illumina [10862568] (imputed)	N
1754	chrX	153325445	153325446	rs1734787	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	2,018 European ancestry cases, 6,925 European ancestry controls	Xq28	IRAK1, MECP2, ARHGAP4, NAA10, RENBP, HCFC1, TMEM187, MIR718	rs1734787-C		2E-15		1.31	[1.22-1.40]	Illumina [644674]	N
1755	chrX	153413518	153413519	rs3890298	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	Xq28	OPN1LW	rs3890298-G	0.09446	1E-11		0.02668385	[0.019-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
1755	chrX	153484067	153484068	rs5989600	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	Xq28	TEX28P1, OPN1MW2	rs5989600-A	0.160272	1E-17		0.022509918	[0.017-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
1755	chrX	153484067	153484068	rs5989600	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	Xq28	TEX28P1, OPN1MW2	rs5989600-A	0.160265	2E-11		0.019622542	[0.014-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1756	chrX	153505752	153505753	rs2266891	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	Xq28		rs2266891-C	NR	4E-11		0.026	[0.018-0.034] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
1756	chrX	153525595	153525595	rs142646789	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	Xq28		rs142646789-GT	NR	1E-14		0.027	[0.02-0.034] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1756	chrX	153528280	153528281	rs180874045	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	Xq28	TKTL1	rs180874045-?		1E-8				Affymetrix, Illumina [NR] (imputed)	N
1756	chrX	153536118	153536119	rs17336718	28604732	Wang Z	2017-06-12	Nat Genet	Meta-analysis of five genome-wide association studies identifies multiple new loci associated with testicular germ cell tumor.	Testicular germ cell tumor	3,558 European ancestry cases, 13,970 European ancestry controls	NA	Xq28	TKTL1	rs17336718-T	0.05	4E-8		1.41	1.25-1.59	Illumina [9210350] (imputed)	N
1756	chrX	153546555	153546556	rs6655282	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	Xq28	TKTL1	rs6655282-A	0.08957	5E-26		0.034879386	[0.028-0.041] unit decrease	Affymetrix [93095623] (imputed)	N
1756	chrX	153546555	153546556	rs6655282	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	Xq28	TKTL1	rs6655282-A	0.08957	3E-28		0.036451053	[0.03-0.043] unit decrease	Affymetrix [93095623] (imputed)	N
1756	chrX	153547817	153547818	rs2283760	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	Xq28	NR	rs2283760-C	0.189338	5E-9		0.00540935	[0.0033-0.0075] unit increase	Affymetrix [16582621] (imputed)	N
1756	chrX	153547817	153547818	rs2283760	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	Xq28	NR	rs2283760-C	0.189338	1E-7		0.00533208	[0.0031-0.0075] unit increase	Affymetrix [16582614] (imputed)	N
1756	chrX	153551382	153551383	rs5987245	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	Xq28	NR	rs5987245-G	0.18891999999999998	8E-11		0.00543067	[0.0037-0.0072] unit increase	Affymetrix [16582909] (imputed)	N
1756	chrX	153551382	153551383	rs5987245	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	Xq28	NR	rs5987245-G	0.18891999999999998	5E-8		0.00539938	[0.0035-0.0073] unit increase	Affymetrix [16582965] (imputed)	N
1756	chrX	153554403	153554404	rs766420	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	Xq28	TKTL1	rs766420-G	0.193078	1E-21		0.022430599	[0.018-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1756	chrX	153554403	153554404	rs766420	19419973	Sanna S	2009-05-06	Hum Mol Genet	Common variants in the SLCO1B3 locus are associated with bilirubin levels and unconjugated hyperbilirubinemia.	Bilirubin levels	4,300 Sardinian individuals	1,860 Sardinian individuals, 832 Old Order Amish individuals	Xq28	G6PD	rs766420-G	0.18	9E-9		0.18	[0.12-0.24] s.d. decrease	Affymetrix [362129]	N
1756	chrX	153554660	153554661	rs766419	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	Xq28	TKTL1	rs766419-G	0.192858	1E-19		0.02135395	[0.017-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1756	chrX	153579447	153579448	rs2070822	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	Xq28		rs2070822-G	NR	8E-17		0.0137	[0.011-0.017] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
1756	chrX	153582197	153582198	rs2070826	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	Xq28		rs2070826-C	NR	8E-19		0.023	[0.018-0.028] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
1756	chrX	153598083	153598084	rs139213493	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	Xq28	FLNA	rs139213493-A	0.084098	4E-20		0.030624129	[0.024-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
1756	chrX	153598083	153598084	rs139213493	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	Xq28	FLNA	rs139213493-A	0.084114	3E-22		0.032756172	[0.026-0.039] unit decrease	Affymetrix [93095623] (imputed)	N
1756	chrX	153612370	153612371	rs5945423	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	Xq28	EMD	rs5945423-C	0.206758	2E-12		0.016334295	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1757	chrX	153640060	153640061	rs11388353	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA			rs11388353-C	NR	1E-13		0.0195	[0.014-0.025] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
1757	chrX	153667107	153667108	rs113696246	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	Xq28		rs113696246-T	NR	4E-10		0.0574	[0.039-0.075] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1757	chrX	153667175	153667176	rs4834	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	93,063 East Asian ancestry individuals	NA	Xq28		rs4834-C	0.102733	9E-10		0.037944	[0.026-0.05] unit decrease	Illumina [13470073] (imputed)	N
1757	chrX	153672330	153672331	rs188437955	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	Xq28	NR	rs188437955-G	0.887524	1E-8		0.0145092	[0.0096-0.0195] unit increase	Affymetrix [15000001]	N
1757	chrX	153714784	153714785	rs12392491	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	Xq28	UBL4A	rs12392491-G	0.121155	9E-10		0.01737706	[0.012-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1757	chrX	153730464	153730465	rs6571252	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	Xq28	FAM3A	rs6571252-C	0.140328	2E-9		0.017693777	[0.012-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1758	chrX	153749856	153749857	rs5945199	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	Xq28	NR	rs5945199-A	0.104	3E-12		0.778	[0.71-0.85]	Illumina [11270530] (imputed)	N
1758	chrX	153762633	153762634	rs5030868	34376796	Sun Q	2021-08-11	J Hum Genet	Analyses of biomarker traits in diverse UK biobank participants identify associations missed by European-centric analysis strategies.	Glycated hemoglobin levels	9,823 South Asian ancestry individuals	NA	Xq28		rs5030868-A	0.0118	8E-48		1.06	[0.92-1.2] mmol/mol decrease	NR [NR] (imputed)	N
1758	chrX	153762633	153762634	rs5030868	34376796	Sun Q	2021-08-11	J Hum Genet	Analyses of biomarker traits in diverse UK biobank participants identify associations missed by European-centric analysis strategies.	Glycated hemoglobin levels	9,823 South Asian ancestry individuals	NA	Xq28		rs5030868-A	0.0118	7E-22	(female)	0.82	[0.66-0.98] mmol/mol decrease	NR [NR] (imputed)	N
1758	chrX	153762633	153762634	rs5030868	34376796	Sun Q	2021-08-11	J Hum Genet	Analyses of biomarker traits in diverse UK biobank participants identify associations missed by European-centric analysis strategies.	Glycated hemoglobin levels	9,823 South Asian ancestry individuals	NA	Xq28		rs5030868-A	0.0118	1E-33	(male)	1.77	[1.5-2.04] mmol/mol decrease	NR [NR] (imputed)	N
1758	chrX	153762633	153762634	rs5030868	26366553	Danjou F	2015-09-14	Nat Genet	Genome-wide association analyses based on whole-genome sequencing in Sardinia provide insights into regulation of hemoglobin levels.	Hemoglobin levels	6,602 Sardinian founder individuals	4,131 European ancestry individuals	Xq28	FAM3A, G6PD, IKBKG	rs5030868-A	0.085	3E-11	(HbA1, Sardinian)	0.1256	[0.088-0.163] g/dl decrease	Illumina [~ 10900000] (imputed)	N
1758	chrX	153764216	153764217	rs1050828	34376796	Sun Q	2021-08-11	J Hum Genet	Analyses of biomarker traits in diverse UK biobank participants identify associations missed by European-centric analysis strategies.	Total bilirubin levels	9,354 African ancestry individuals	11,960 African ancestry individuals	Xq28		rs1050828-T	0.1146	2E-9		0.0843	umol/L increase	NR [NR] (imputed)	N
1758	chrX	153764216	153764217	rs1050828	34376796	Sun Q	2021-08-11	J Hum Genet	Analyses of biomarker traits in diverse UK biobank participants identify associations missed by European-centric analysis strategies.	Direct bilirubin levels	9,354 African ancestry individuals	11,960 African ancestry individuals	Xq28		rs1050828-T	0.1146	2E-9		0.0843	umol/L increase	NR [NR] (imputed)	N
1758	chrX	153764216	153764217	rs1050828	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	6,647 African American individuals	NA	Xq28	G6PD	rs1050828-T	0.1246	5E-124		0.307	[0.28-0.33] unit decrease	Affymetrix, Illumina [26614666] (imputed)	N
1758	chrX	153764216	153764217	rs1050828	34014839	Page GP	2021-05-20	J Clin Invest	Multi-ancestry genome-wide association study identifies 27 loci associated with measures of hemolysis following blood storage.	hemolysis of donated blood (oxidative)	Up to 7,586 non-Hispanic White ancestry individuals, Up to 1,049 East Asian ancestry individuals, Up to 257 South Asian ancestry individuals, Up to 1,046 African Americans individuals, Up to 456 Mexican and Central American Hispanics individuals, Up to 489 Caribbean Island Hispanics, Up to 1,336 individuals	NA	Xq28	G6PD	rs1050828-?	NR	3E-17		3.8	NR unit increase	NR [14100000] (imputed)	N
1758	chrX	153764216	153764217	rs1050828	34014839	Page GP	2021-05-20	J Clin Invest	Multi-ancestry genome-wide association study identifies 27 loci associated with measures of hemolysis following blood storage.	hemolysis of donated blood (oxidative)	Up to 1,046 African Americans individuals	NA	Xq28	G6PD	rs1050828-?	NR	5E-8				NR [14100000] (imputed)	N
1758	chrX	153764216	153764217	rs1050828	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Red cell distribution width	10,184 White ancestry individuals, 44 Asian ancestry individuals, 6,776 Black individuals, 11,978 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	Xq28		rs1050828-T	NR	8E-106		0.66	[0.6-0.72] unit decrease	Illumina [76131582]	N
1758	chrX	153764216	153764217	rs1050828	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Red blood cell count	20,220 Amish, White ancestry individuals, 384 Asian ancestry individuals, 10,747 Black individuals, 13,119 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	Xq28		rs1050828-T	NR	4E-82		0.15	[0.13-0.17] unit decrease	Illumina [92652022]	N
1758	chrX	153764216	153764217	rs1050828	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular volume	22,267 Amish, White ancestry individuals, 447 Asian ancestry individuals, 12,285 Black individuals, 13,831 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	Xq28		rs1050828-T	NR	4E-82		1.84	[1.64-2.04] unit increase	Illumina [97506867]	N
1758	chrX	153764216	153764217	rs1050828	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular hemoglobin	20,714 Amish, White ancestry individuals, 447 Asian ancestry individuals, 11,246 Black individuals, 13,834 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	Xq28		rs1050828-T	NR	2E-48		0.56	[0.48-0.64] unit increase	Illumina [94681438]	N
1758	chrX	153764216	153764217	rs1050828	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Hemoglobin	33,325 Amish, White ancestry individuals, 653 Asian ancestry individuals, 14,454 Black individuals, 14,029 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	Xq28		rs1050828-T	NR	1E-28		0.2	[0.16-0.24] unit decrease	Illumina [110351653]	N
1758	chrX	153764216	153764217	rs1050828	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Hematocrit	33,324 Amish, White ancestry individuals, 654 Asian ancestry individuals, 14,474 Black individuals, 14,035 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	Xq28		rs1050828-T	NR	3E-22		0.52	[0.42-0.62] unit decrease	Illumina [110396782]	N
1758	chrX	153764216	153764217	rs1050828	31213470	Moon JY	2019-06-18	Diabetes Care	A Genome-Wide Association Study Identifies Blood Disorder-Related Variants Influencing Hemoglobin A1c With Implications for Glycemic Status in U.S. Hispanics/Latinos.	Glycated hemoglobin levels	9,636 Hispanic/Latino individuals	4,777 Hispanic/Latino individuals	Xq28	G6PD	rs1050828-T	0.02	1E-133		0.346	[0.32-0.37] % decrease	Illumina [11510031] (imputed)	N
1758	chrX	153764216	153764217	rs1050828	28898252	Wheeler E	2017-09-12	PLoS Med	Impact of common genetic determinants of Hemoglobin A1c on type 2 diabetes risk and diagnosis in ancestrally diverse populations: A transethnic genome-wide meta-analysis.	Glycated hemoglobin levels	7,564 African American individuals	NA	Xq28	G6PD	rs1050828-T	0.116	8E-135		0.3819	[0.35-0.41] unit decrease	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1758	chrX	153764216	153764217	rs1050828	28453575	Hodonsky CJ	2017-04-28	PLoS Genet	Genome-wide association study of red blood cell traits in Hispanics/Latinos: The Hispanic Community Health Study/Study of Latinos.	Red cell distribution width	12,502 Hispanic/Latino individuals	4,772 Hispanic/Latino individuals	Xq28	G6PD	rs1050828-T	0.02	4E-29		0.04	[0.031-0.043] unit decrease	Illumina [27801688] (imputed)	N
1758	chrX	153764216	153764217	rs1050828	28453575	Hodonsky CJ	2017-04-28	PLoS Genet	Genome-wide association study of red blood cell traits in Hispanics/Latinos: The Hispanic Community Health Study/Study of Latinos.	Red blood cell count	12,502 Hispanic/Latino individuals	4,772 Hispanic/Latino individuals	Xq28	G6PD	rs1050828-C	0.98	2E-18		0.13	[0.11-0.15] cells x E9 increase	Illumina [27801688] (imputed)	N
1758	chrX	153764216	153764217	rs1050828	28453575	Hodonsky CJ	2017-04-28	PLoS Genet	Genome-wide association study of red blood cell traits in Hispanics/Latinos: The Hispanic Community Health Study/Study of Latinos.	Mean corpuscular volume	12,502 Hispanic/Latino individuals	4,772 Hispanic/Latino individuals	Xq28	G6PD	rs1050828-C	0.98	1E-17		1.92	[1.49-2.35] fL decrease	Illumina [27801688] (imputed)	N
1758	chrX	153764216	153764217	rs1050828	28453575	Hodonsky CJ	2017-04-28	PLoS Genet	Genome-wide association study of red blood cell traits in Hispanics/Latinos: The Hispanic Community Health Study/Study of Latinos.	Mean corpuscular volume	12,502 Hispanic/Latino individuals	4,772 Hispanic/Latino individuals	Xq28	G6PD	rs1050828-C	0.98	1E-17		1.92	[1.49-2.35] fL decrease	Illumina [27801688] (imputed)	N
1758	chrX	153764216	153764217	rs1050828	28453575	Hodonsky CJ	2017-04-28	PLoS Genet	Genome-wide association study of red blood cell traits in Hispanics/Latinos: The Hispanic Community Health Study/Study of Latinos.	Mean corpuscular hemoglobin	12,502 Hispanic/Latino individuals	4,772 Hispanic/Latino individuals	Xq28	G6PD	rs1050828-A	0.02	5E-11		0.546	[0.38-0.71] pg increase	Illumina [27801688] (imputed)	N
1758	chrX	153764216	153764217	rs1050828	28334935	Raffield LM	2017-05-15	Hum Mol Genet	Genome-wide association study of iron traits and relation to diabetes in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL): potential genomic intersection of iron and glucose regulation?	Iron status biomarkers (transferrin saturation)	12,589 Hispanic/Latino individuals	NA	Xq28	G6PD	rs1050828-C	NR	4E-7		0.21441	[0.13-0.3] unit decrease	Illumina [27700000] (imputed)	N
1758	chrX	153764216	153764217	rs1050828	23696099	Ding K	2013-05-20	G3 (Bethesda)	Genetic variants that confer resistance to malaria are associated with red blood cell traits in African-Americans: an electronic medical record-based genome-wide association study.	Red blood cell traits	1904 African American individuals	411 African American individuals	Xq28	G6PD	rs1050828-A	0.12	9E-9	(MCH)	0.72	[0.48-0.96] pg increase	Illumina [907954]	N
1758	chrX	153764216	153764217	rs1050828	23696099	Ding K	2013-05-20	G3 (Bethesda)	Genetic variants that confer resistance to malaria are associated with red blood cell traits in African-Americans: an electronic medical record-based genome-wide association study.	Red blood cell traits	1904 African American individuals	411 African American individuals	Xq28	G6PD	rs1050828-A	0.12	4E-13	(RBC count)	0.2	[0.14-0.26] x10^12/L decrease	Illumina [907954]	N
1758	chrX	153764216	153764217	rs1050828	23696099	Ding K	2013-05-20	G3 (Bethesda)	Genetic variants that confer resistance to malaria are associated with red blood cell traits in African-Americans: an electronic medical record-based genome-wide association study.	Red blood cell traits	1904 African American individuals	411 African American individuals	Xq28	G6PD	rs1050828-A	0.12	1E-14	(MCV)	2.46	[1.83-3.09] fL increase	Illumina [907954]	N
1758	chrX	153764216	153764217	rs1050828	23446634	Chen Z	2013-02-26	Hum Mol Genet	Genome-wide association analysis of red blood cell traits in African Americans: the COGENT Network.	Red blood cell traits	Up to 16,485 African American individuals	9,692 African American individuals, 21,020 European ancestry individuals, 14,088 Japanese ancestry individuals	Xq28	G6PD	rs1050828-T	0.116	2E-11	(RDW, AA)	0.0326	[0.023-0.042] % decrease	Affymetrix, Illumina [NR]	N
1758	chrX	153764216	153764217	rs1050828	23446634	Chen Z	2013-02-26	Hum Mol Genet	Genome-wide association analysis of red blood cell traits in African Americans: the COGENT Network.	Red blood cell traits	Up to 16,485 African American individuals	9,692 African American individuals, 21,020 European ancestry individuals, 14,088 Japanese ancestry individuals	Xq28	F8, CTAG2, G6PD, MECP2, MPP1	rs1050828-T	0.108	4E-19	(RBC, AA)	0.108	[0.0063-0.2097] x10^6/uL, decrease	Affymetrix, Illumina [NR]	N
1758	chrX	153764662	153764663	rs762516	23446634	Chen Z	2013-02-26	Hum Mol Genet	Genome-wide association analysis of red blood cell traits in African Americans: the COGENT Network.	Red blood cell traits	Up to 16,485 African American individuals	9,692 African American individuals, 21,020 European ancestry individuals, 14,088 Japanese ancestry individuals	Xq28	TKTL1, G6PD, MECP2, MPP1	rs762516-T	0.148	2E-16	(Ht, AA)	0.452	[0.34-0.56] % decrease	Affymetrix, Illumina [NR]	N
1758	chrX	153764662	153764663	rs762516	23446634	Chen Z	2013-02-26	Hum Mol Genet	Genome-wide association analysis of red blood cell traits in African Americans: the COGENT Network.	Red blood cell traits	Up to 16,485 African American individuals	9,692 African American individuals, 21,020 European ancestry individuals, 14,088 Japanese ancestry individuals	Xq28	TKTL1, G6PD, MECP2, MPP1	rs762516-T	0.146	4E-18	(Hgb, AA)	0.1614	[0.12-0.2] g/dL decrease	Affymetrix, Illumina [NR]	N
1758	chrX	153764662	153764663	rs762516	23446634	Chen Z	2013-02-26	Hum Mol Genet	Genome-wide association analysis of red blood cell traits in African Americans: the COGENT Network.	Red blood cell traits	Up to 16,485 African American individuals	9,692 African American individuals, 21,020 European ancestry individuals, 14,088 Japanese ancestry individuals	Xq28	F8, FAM3A, G6PD, MPP1	rs762516-T	0.137	4E-14	(MCV, AA)	1.5768	[1.17-1.99] fL increase	Affymetrix, Illumina [NR]	N
1759	chrX	153891600	153891601	rs7063597	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	15,248 Hispanic individuals	NA	Xq28	CTAG2	rs7063597-T	0.0251	1E-109		0.324	[0.3-0.35] unit decrease	Affymetrix, Illumina [29199641] (imputed)	N
1759	chrX	153893402	153893403	rs146474788	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	4,441 Sub-Saharan African ancestry individuals	NA	Xq28	GAB3	rs146474788-A	0.123	3E-45		0.177	[0.15-0.2] unit decrease	NR [19426848] (imputed)	N
1759	chrX	153893402	153893403	rs146474788	28453575	Hodonsky CJ	2017-04-28	PLoS Genet	Genome-wide association study of red blood cell traits in Hispanics/Latinos: The Hispanic Community Health Study/Study of Latinos.	Mean corpuscular hemoglobin	12,502 Hispanic/Latino individuals	4,772 Hispanic/Latino individuals	Xq28	CTAG2, GAB3	rs146474788-G	0.98	2E-29		0.56	[0.40-0.72] pg decrease	Illumina [27801688] (imputed)	N
1759	chrX	153901028	153901029	rs782241625	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	Xq28	GAB3	rs782241625-T	1.78000000000011E-4	3E-9		0.56509477	[0.38-0.75] unit increase	Affymetrix [93095623] (imputed)	N
1759	chrX	153906011	153906012	rs141555380	28334935	Raffield LM	2017-05-15	Hum Mol Genet	Genome-wide association study of iron traits and relation to diabetes in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL): potential genomic intersection of iron and glucose regulation?	Iron status biomarkers (transferrin saturation)	12,589 Hispanic/Latino individuals	NA	Xq28	GAB3	rs141555380-C	NR	8E-7		0.19297	[0.12-0.27] unit decrease	Illumina [27700000] (imputed)	N
1759	chrX	153933144	153933145	rs112439069	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	Xq28	GAB3	rs112439069-C	0.243155	4E-9		0.012704724	[0.0085-0.0169] unit decrease	Affymetrix [93095623] (imputed)	N
1759	chrX	153945601	153945602	rs2664170	19430480	Barrett JC	2009-05-10	Nat Genet	Genome-wide association study and meta-analysis find that over 40 loci affect risk of type 1 diabetes.	Type 1 diabetes	7,514 European ancestry cases, 9,045 European ancestry controls	4,267 European ancestry cases, 4,670 European ancestry controls, 4,342 European ancestry trios from 2,319 families	Xq28	intergenic	rs2664170-G	0.32	8E-9		1.16	[1.07-1.24]	Affymetrix, Illumina [841622] (imputed)	N
1759	chrX	154003703	154003704	rs782375379	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Red cell distribution width	10,184 White ancestry individuals, 44 Asian ancestry individuals, 6,776 Black individuals, 11,978 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	Xq28		rs782375379-A	NR	1E-9	(conditional)	0.88	[0.59-1.17] unit decrease	Illumina [76131582]	N
1760	chrX	154014106	154014107	rs5987027	23263863	Li J	2012-12-20	Hum Mol Genet	GWAS of blood cell traits identifies novel associated loci and epistatic interactions in Caucasian and African-American children.	Mean corpuscular volume	7,943 African American children, 6,234 European ancestry children	NA	Xq28	MPP1	rs5987027-T	0.2462	4E-10	(AA)	0.9159	[0.63-1.2] unit increase	Illumina [544917]	N
1760	chrX	154014106	154014107	rs5987027	23263863	Li J	2012-12-20	Hum Mol Genet	GWAS of blood cell traits identifies novel associated loci and epistatic interactions in Caucasian and African-American children.	Hematology traits	7,943 African American children, 6,234 European ancestry children	NA	Xq28	MPP1	rs5987027-T	0.2462	1E-11	(AA, RBC)	0.0745	[0.053-0.096] unit decrease	Illumina [544917]	N
1760	chrX	154105927	154105928	rs189305788	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Red cell distribution width	10,184 White ancestry individuals, 44 Asian ancestry individuals, 6,776 Black individuals, 11,978 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	Xq28		rs189305788-A	NR	2E-12	(conditional)	0.77	[0.55-0.99] unit decrease	Illumina [76131582]	N
1761	chrX	154158284	154158285	rs1800291	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 157,769 European ancestry controls	NA	Xq28	NR	rs1800291-?	NR	3E-7		0.0704	[0.044-0.097] unit decrease	Affymetrix, Illumina [12923718] (imputed)	N
1761	chrX	154233773	154233774	rs17281398	22808956	Lyons PA	2012-07-19	N Engl J Med	Genetically distinct subsets within ANCA-associated vasculitis.	Antineutrophil cytoplasmic antibody-associated vasculitis	914 European ancestry cases, 5,259 European ancestry controls	1,454 European ancestry cases, 1,666 European ancestry controls	Xq28	F8	rs17281398-?	NR	4E-7				Affymetrix [NR]	N
1761	chrX	154260251	154260251	rs150573249	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	Xq28		rs150573249-AT	NR	5E-16		0.019	[0.014-0.024] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
1762	chrX	154278796	154278797	rs114209171	26908601	Hinds DA	2016-02-09	Hum Mol Genet	Genome-wide association analysis of self-reported events in 6135 individuals and 252 827 controls identifies 8 loci associated with thrombosis.	Thrombosis	6,135 European ancestry cases, 252,827 European ancestry controls	NA	Xq28	F8	rs114209171-T	0.7756	7E-13		1.153	[1.108- 1.200]	Illumina [at least 560000] (imputed)	N
1762	chrX	154279642	154279643	rs17328181	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 157,769 European ancestry controls	NA	Xq28	NR	rs17328181-?	NR	2E-7		0.0752	[0.047-0.103] unit increase	Affymetrix, Illumina [12923718] (imputed)	N
1762	chrX	154332655	154332656	rs7051718	31676865	Klarin D	2019-11-01	Nat Genet	Genome-wide association analysis of venous thromboembolism identifies new risk loci and genetic overlap with arterial vascular disease.	Venous thromboembolism	23,151 European ancestry cases, 553,439 European ancestry controls, 2,261 African American cases, 49,400 African American controls, 654 Hispanic cases, 21,214 Hispanic controls	17,672 cases, 167,295 controls	Xq28	BRCC3	rs7051718-T	0.7507	4E-12		1.07	[1.05-1.08]	Affymetrix [up to 34000000] (imputed)	N
1763	chrX	154424169	154424170	rs143478537	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 799 African American cases, 157,769 European ancestry controls, 14,353 African American controls	NA	Xq28	F8	rs143478537-G	NR	3E-8		1.08	[1.05-1.11]	Affymetrix, Illumina [12923718] (imputed)	N
1763	chrX	154424169	154424170	rs143478537	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 157,769 European ancestry controls	NA	Xq28	NR	rs143478537-?	NR	9E-8		0.0778	[0.049-0.106] unit decrease	Affymetrix, Illumina [12923718] (imputed)	N
1763	chrX	154456643	154456644	rs782631177	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 7)	19,670 European ancestry individuals	NA	Xq28		rs782631177-?	NR	2E-9				NR [9705931] (imputed)	N
1763	chrX	154523304	154523305	rs781930992	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Red cell distribution width	10,184 White ancestry individuals, 44 Asian ancestry individuals, 6,776 Black individuals, 11,978 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	Xq28		rs781930992-C	NR	1E-11	(conditional)	0.79	[0.55-1.03] unit decrease	Illumina [76131582]	N
1764	chrX	154620488	154620489	rs28802027	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 157,769 European ancestry controls	NA	Xq28	NR	rs28802027-?	NR	3E-7		0.0748	[0.046-0.104] unit decrease	Affymetrix, Illumina [12923718] (imputed)	N
1766	chrX	154825142	154825143	rs147751295	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 157,769 European ancestry controls	NA	Xq28	NR	rs147751295-?	NR	3E-7		0.0756	[0.047-0.105] unit decrease	Affymetrix, Illumina [12923718] (imputed)	N
1766	chrX	154905079	154905080	rs17052130	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Red cell distribution width	10,184 White ancestry individuals, 44 Asian ancestry individuals, 6,776 Black individuals, 11,978 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	Xq28		rs17052130-C	NR	2E-62		0.47	[0.41-0.53] unit decrease	Illumina [76131582]	N
1766	chrX	154905079	154905080	rs17052130	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Red blood cell count	20,220 Amish, White ancestry individuals, 384 Asian ancestry individuals, 10,747 Black individuals, 13,119 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	Xq28		rs17052130-C	NR	6E-42		0.1	[0.08-0.12] unit decrease	Illumina [92652022]	N
1766	chrX	154905079	154905080	rs17052130	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular volume	22,267 Amish, White ancestry individuals, 447 Asian ancestry individuals, 12,285 Black individuals, 13,831 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	Xq28		rs17052130-C	NR	2E-51		1.39	[1.21-1.57] unit increase	Illumina [97506867]	N
1766	chrX	154905079	154905080	rs17052130	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular hemoglobin	20,714 Amish, White ancestry individuals, 447 Asian ancestry individuals, 11,246 Black individuals, 13,834 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	Xq28		rs17052130-C	NR	5E-29		0.41	[0.33-0.49] unit increase	Illumina [94681438]	N
1766	chrX	154905079	154905080	rs17052130	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Hemoglobin	33,325 Amish, White ancestry individuals, 653 Asian ancestry individuals, 14,454 Black individuals, 14,029 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	Xq28		rs17052130-C	NR	1E-15		0.14	[0.1-0.18] unit decrease	Illumina [110351653]	N
1766	chrX	154905079	154905080	rs17052130	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Hematocrit	33,324 Amish, White ancestry individuals, 654 Asian ancestry individuals, 14,474 Black individuals, 14,035 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	Xq28		rs17052130-C	NR	1E-12		0.37	[0.27-0.47] unit decrease	Illumina [110396782]	N
1766	chrX	154905079	154905080	rs17052130	28334935	Raffield LM	2017-05-15	Hum Mol Genet	Genome-wide association study of iron traits and relation to diabetes in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL): potential genomic intersection of iron and glucose regulation?	Iron status biomarkers (transferrin saturation)	12,589 Hispanic/Latino individuals	NA	Xq28	SPRY3	rs17052130-T	NR	8E-7		0.19254	[0.12-0.27] unit decrease	Illumina [27700000] (imputed)	N
1767	chrX	154979338	154979339	rs306896	28000841	Baek SH	2016-12-14	Mol Med Rep	Genome-wide association scans for idiopathic osteonecrosis of the femoral head in a Korean population.	Idiopathic osteonecrosis of the femoral head	217 Korean ancestry cases, 217 Korean ancestry controls	NA	Xq28	SPRY3	rs306896-?	NR	2E-6				Affymetrix [509886]	N
1767	chrX	154987146	154987147	rs306890	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	Xq28	NR	rs306890-C	NR	6E-20		0.036	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
1767	chrX	154987146	154987147	rs306890	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	Xq28	NR	rs306890-T	NR	2E-12		0.032	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1767	chrX	154987146	154987147	rs306890	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	Xq28	NR	rs306890-T	0.754	8E-12	(EA)	0.034	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1767	chrX	154987146	154987147	rs306890	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	Xq28	NR	rs306890-T	NR	1E-22		0.048	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1767	chrX	154987146	154987147	rs306890	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	Xq28	NR	rs306890-T	0.754	7E-19	(EA)	0.049	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1767	chrX	154987146	154987147	rs306890	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	Xq28	NR	rs306890-T	NR	4E-19		0.045	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1767	chrX	154987146	154987147	rs306890	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	Xq28	NR	rs306890-T	0.754	9E-15	(EA)	0.044	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1768	chrX	155184452	155184453	rs75303099	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	Xq28		rs75303099-T	0.165937	1E-14		0.023231503	[0.017-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
1768	chrX	155184452	155184453	rs75303099	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	Xq28		rs75303099-T	0.165941	5E-13		0.021797022	[0.016-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
1769	chrX	155230626	155230627	rs3093479	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	Xq28		rs3093479-G	0.062412	1E-11		0.036450367	[0.026-0.047] unit increase	Affymetrix [93095623] (imputed)	N
1769	chrX	155230626	155230627	rs3093479	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	Xq28		rs3093479-G	0.062421	3E-11		0.035974465	[0.025-0.047] unit increase	Affymetrix [93095623] (imputed)	N
592	chrY	940179	940180	rs4129148	17522711	Lencz T	2007-03-20	Mol Psychiatry	Converging evidence for a pseudoautosomal cytokine receptor gene locus in schizophrenia.	Schizophrenia	178 European ancestry cases, 144 European ancestry controls	NA	Xp22.33	CSF2RA, IL3RA	rs4129148-C	NR	4E-7		3.23	[2.04-5.15]	Affymetrix [439511]	N
594	chrY	1293493	1293494	rs9330638	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	Xp22.33		rs9330638-G	0.26164	3E-19		0.023916148	[0.019-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
594	chrY	1300811	1300812	rs9785465	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	Xp22.33		rs9785465-C	0.244386	2E-19		0.02670165	[0.021-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
595	chrY	1314000	1314001	rs141498873	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	Xp22.33		rs141498873-G	0.251568	3E-13		0.025407542	[0.019-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
595	chrY	1314000	1314001	rs141498873	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	Xp22.33		rs141498873-G	0.251557	5E-14		0.026336903	[0.019-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
595	chrY	1318108	1318109	rs28380386	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	Xp22.33		rs28380386-T	0.135402	7E-84		0.06805516	[0.061-0.075] unit decrease	Affymetrix [93095623] (imputed)	N
595	chrY	1323049	1323050	rs28649190	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	Xp22.33		rs28649190-C	0.132693	3E-82		0.06481243	[0.058-0.071] unit decrease	Affymetrix [93095623] (imputed)	N
595	chrY	1325186	1325187	rs28532112	34582791	Mikhaylova AV	2021-09-27	Am J Hum Genet	Whole-genome sequencing in diverse subjects identifies genetic correlates of leukocyte traits: The NHLBI TOPMed program.	Eosinophil counts	14,246 African American individuals, 686 East Asian ancestry individuals, 33,285 European American ancestry individuals, 13,585 Hispanic/Latin American individuals	199,126 African ancestry, European ancestry, Hispanic or Latin American individuals	Xp22.33		rs28532112-G	NR	5E-6		0.0901	[0.051-0.129] cell/L decrease	NR [88691872]	N
595	chrY	1363676	1363677	rs28602228	33731350	Nandakumar P	2021-03-17	Sci Adv	Nuclear genome-wide associations with mitochondrial heteroplasmy.	Mitochondrial heteroplasmy measurement	982,072 European ancestry individuals	NA	Xp22.33	CSF2RA	rs28602228-T	0.371	8E-16		0.008	[0.006-0.010] unit increase	NR [57525634] (imputed)	N
595	chrY	1403024	1403025	rs35494566	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	Xp22.33		rs35494566-G	0.249415	6E-14		0.022470973	[0.017-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
595	chrY	1403024	1403025	rs35494566	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	Xp22.33		rs35494566-G	0.249413	4E-11		0.019712426	[0.014-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
596	chrY	1533442	1533443	rs4933152	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	Xp22.33		rs4933152-G	0.106723	8E-9		0.021006407	[0.014-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
596	chrY	1533442	1533443	rs4933152	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	Xp22.33		rs4933152-G	0.106728	7E-10		0.022408715	[0.015-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
596	chrY	1535078	1535079	rs28578016	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	Xp22.33		rs28578016-T	0.189516	1E-10		0.018075963	[0.013-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
596	chrY	1535078	1535079	rs28578016	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	Xp22.33		rs28578016-T	0.189584	7E-10		0.017453998	[0.012-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
596	chrY	1535078	1535079	rs28578016	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	Xp22.33		rs28578016-T	0.189677	2E-18		0.024979902	[0.019-0.031] unit increase	Affymetrix [93095623] (imputed)	N
596	chrY	1535078	1535079	rs28578016	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	Xp22.33		rs28578016-T	0.18962	3E-11		0.019109191	[0.013-0.025] unit increase	Affymetrix [93095623] (imputed)	N
596	chrY	1535078	1535079	rs28578016	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	Xp22.33		rs28578016-T	0.189565	4E-14		0.021397209	[0.016-0.027] unit increase	Affymetrix [93095623] (imputed)	N
596	chrY	1535078	1535079	rs28578016	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	Xp22.33		rs28578016-T	0.189571	3E-13		0.020666426	[0.015-0.026] unit increase	Affymetrix [93095623] (imputed)	N
597	chrY	1649718	1649719	rs112833075	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	Xp22.33		rs112833075-A	0.111169	4E-10		0.022361929	[0.015-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
604	chrY	2509246	2509247	rs6567633	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	Xp22.33	NR	rs6567633-?	NR	5E-6				Affymetrix [NR]	N
604	chrY	2616383	2616384	rs311103	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	Xp22.33		rs311103-C	0.292846	8E-10		0.015670532	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
636	chrY	6753510	6753511	rs9785971	32996047	Alsubaie LM	2020-09-29	Mol Biol Rep	Risk Y-haplotypes and pathogenic variants of Arab-ancestry boys with autism by an exome-wide association study.	Autism	47 Saudi Arab ancestry young male cases, 43 Saudi Arab ancestry young male controls	NA	Yp11.2	intergenic	rs978597-G	0.167	7E-8		22.4151	[5.1219-98.0966]	Illumina [243345]	N
637	chrY	6868117	6868118	rs1865680	32996047	Alsubaie LM	2020-09-29	Mol Biol Rep	Risk Y-haplotypes and pathogenic variants of Arab-ancestry boys with autism by an exome-wide association study.	Autism	47 Saudi Arab ancestry young male cases, 43 Saudi Arab ancestry young male controls	NA	Yp11.2	TBL1Y	rs1865680-G	0.174	2E-8		24.6226	[5.6469-107.3643]	Illumina [243345]	N
699	chrY	15026423	15026424	rs2032624	32996047	Alsubaie LM	2020-09-29	Mol Biol Rep	Risk Y-haplotypes and pathogenic variants of Arab-ancestry boys with autism by an exome-wide association study.	Autism	47 Saudi Arab ancestry young male cases, 43 Saudi Arab ancestry young male controls	NA	Yq11.221	DDX3Y	rs2032624-A	0.165	2E-8		20.8868	[4.7675-91.5071]	Illumina [243345]	N
703	chrY	15581982	15581983	rs2032658	32996047	Alsubaie LM	2020-09-29	Mol Biol Rep	Risk Y-haplotypes and pathogenic variants of Arab-ancestry boys with autism by an exome-wide association study.	Autism	47 Saudi Arab ancestry young male cases, 43 Saudi Arab ancestry young male controls	NA	Yq11.221	UTY	rs2032658-A	0.155	3E-9		46.3585	[6.1221-351.0397]	Illumina [243345]	N
713	chrY	16804851	16804852	rs2115848	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Pursuit maintenance gain	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	Yq11.221	intergenic	rs2115848-A	0.01724	1E-6	(African)			Illumina [4404269] (imputed)	N
713	chrY	16804851	16804852	rs2115848	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Pursuit maintenance gain	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	Yq11.221	intergenic	rs2115848-A	0.005882	9E-7				Illumina [4404269] (imputed)	N
751	chrY	21867786	21867787	rs2032631	32996047	Alsubaie LM	2020-09-29	Mol Biol Rep	Risk Y-haplotypes and pathogenic variants of Arab-ancestry boys with autism by an exome-wide association study.	Autism	47 Saudi Arab ancestry young male cases, 43 Saudi Arab ancestry young male controls	NA	Yq11.223	KDM5D	rs2032631-G	0.174	2E-8		24.2308	[5.5455-105.8754]	Illumina [243345]	N
758	chrY	22739366	22739367	rs9786153	32996047	Alsubaie LM	2020-09-29	Mol Biol Rep	Risk Y-haplotypes and pathogenic variants of Arab-ancestry boys with autism by an exome-wide association study.	Autism	47 Saudi Arab ancestry young male cases, 43 Saudi Arab ancestry young male controls	NA	Yq11.223	EIF1AY	rs9786153-T	0.151	3E-9		1.7955	[0.1597-20.1843]	Illumina [243345]	N
758	chrY	22749852	22749853	rs13447352	32996047	Alsubaie LM	2020-09-29	Mol Biol Rep	Risk Y-haplotypes and pathogenic variants of Arab-ancestry boys with autism by an exome-wide association study.	Autism	47 Saudi Arab ancestry young male cases, 43 Saudi Arab ancestry young male controls	NA	Yq11.223	EIF1AY	rs13447352-A	0.62	5E-6		4.970179	[1.91-12.95]	Illumina [243345]	N
1035	chrY	59082344	59082345	rs306896	28000841	Baek SH	2016-12-14	Mol Med Rep	Genome-wide association scans for idiopathic osteonecrosis of the femoral head in a Korean population.	Idiopathic osteonecrosis of the femoral head	217 Korean ancestry cases, 217 Korean ancestry controls	NA	Xq28	SPRY3	rs306896-?	NR	2E-6				Affymetrix [509886]	N
1035	chrY	59090152	59090153	rs306890	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	Xq28	NR	rs306890-C	NR	6E-20		0.036	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
1035	chrY	59090152	59090153	rs306890	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	Xq28	NR	rs306890-T	NR	2E-12		0.032	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1035	chrY	59090152	59090153	rs306890	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	Xq28	NR	rs306890-T	0.754	8E-12	(EA)	0.034	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1035	chrY	59090152	59090153	rs306890	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	Xq28	NR	rs306890-T	NR	1E-22		0.048	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1035	chrY	59090152	59090153	rs306890	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	Xq28	NR	rs306890-T	0.754	7E-19	(EA)	0.049	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1035	chrY	59090152	59090153	rs306890	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	Xq28	NR	rs306890-T	NR	4E-19		0.045	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1035	chrY	59090152	59090153	rs306890	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	Xq28	NR	rs306890-T	0.754	9E-15	(EA)	0.044	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1037	chrY	59287458	59287459	rs75303099	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	Xq28		rs75303099-T	0.165937	1E-14		0.023231503	[0.017-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
1037	chrY	59287458	59287459	rs75303099	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	Xq28		rs75303099-T	0.165941	5E-13		0.021797022	[0.016-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
1037	chrY	59333632	59333633	rs3093479	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	Xq28		rs3093479-G	0.062412	1E-11		0.036450367	[0.026-0.047] unit increase	Affymetrix [93095623] (imputed)	N
1037	chrY	59333632	59333633	rs3093479	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	Xq28		rs3093479-G	0.062421	3E-11		0.035974465	[0.025-0.047] unit increase	Affymetrix [93095623] (imputed)	N
